607 687 174 0 0 chr1 3000001 3000156 -194195276 - L1_Mur2 LINE L1 -4310 1567 1413 1 607 917 214 114 45 chr1 3000237 3000733 -194194699 - L1_Mur2 LINE L1 -4488 1389 913 1 607 215 31 0 30 chr1 3000733 3000766 -194194666 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 607 845 233 76 114 chr1 3000766 3000792 -194194640 - L1_Mur2 LINE L1 -6816 912 887 1 607 621 250 65 37 chr1 3001287 3001583 -194193849 - Lx9 LINE L1 -1596 6048 5742 3 607 1320 197 332 7 chr1 3001722 3002005 -194193427 - RLTR25A LTR ERVK 0 1028 625 4 607 414 0 0 0 chr1 3002005 3002051 -194193381 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 607 2352 193 69 64 chr1 3002051 3002615 -194192817 - RLTR25A LTR ERVK -404 624 1 4 607 386 268 145 138 chr1 3003212 3003261 -194192171 - L1M2 LINE L1 -1343 4800 4769 6 607 797 201 147 0 chr1 3003261 3003445 -194191987 - B3 SINE B2 -2 214 4 7 607 386 268 145 138 chr1 3003445 3003815 -194191617 - L1M2 LINE L1 -1375 4768 4378 6 607 513 47 0 0 chr1 3004066 3004130 -194191302 + (TA)n Simple_repeat Simple_repeat 1 64 0 8 607 25 65 0 0 chr1 3004152 3004198 -194191234 + AT_rich Low_complexity Low_complexity 1 46 0 9 607 1604 155 14 4 chr1 3004552 3004830 -194190602 + L1Md_F2 LINE L1 217 497 -6141 1 607 32548 84 2 13 chr1 3004832 3011092 -194184340 - L1Md_F2 LINE L1 -12 6570 384 1 75 25912 103 35 1 chr1 3011124 3015902 -194179530 + L1Md_F2 LINE L1 643 5585 -298 1 608 6275 98 45 9 chr1 3015904 3016852 -194178580 + L1Md_F2 LINE L1 5588 6569 -13 1 608 1721 104 75 26 chr1 3016886 3017193 -194178239 + RLTRETN_Mm LTR ERVK 1 322 0 1 608 370 397 54 27 chr1 3017204 3017572 -194177860 - L1MEf LINE L1 -5341 859 482 1 608 1505 192 67 22 chr1 3018338 3018653 -194176779 - RLTR14 LTR ERV1 -51 331 3 1 608 3847 112 46 60 chr1 3019021 3019783 -194175649 - RMER17A LTR ERVK 0 751 1 1 608 467 140 80 23 chr1 3020150 3020238 -194175194 - RLTR13C2 LTR ERVK 0 808 716 1 608 216 160 0 39 chr1 3020367 3020419 -194175013 + T-rich Low_complexity Low_complexity 5 54 0 1 608 1169 151 29 0 chr1 3020426 3020632 -194174800 - Lx2 LINE L1 -11 6986 6775 1 608 19718 152 21 11 chr1 3020632 3021439 -194173993 - Lx2 LINE L1 -354 6643 5824 1 608 2885 21 0 43 chr1 3021439 3021791 -194173641 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 608 19718 173 38 61 chr1 3021791 3025633 -194169799 - Lx2 LINE L1 -58 5825 2050 1 608 1125 187 70 127 chr1 3025633 3026050 -194169382 - RLTR9C LTR ERVK 0 393 1 2 608 19718 179 27 40 chr1 3026050 3027589 -194167843 - Lx2 LINE L1 -3834 2049 549 1 608 505 296 52 7 chr1 3027594 3027730 -194167702 - ID_B1 SINE B4 -72 152 11 2 608 34226 54 9 4 chr1 3027807 3033128 -194162304 + L1Md_A LINE L1 279 5586 -297 2 608 8253 40 1 0 chr1 3033128 3034121 -194161311 + L1Md_A LINE L1 5587 6580 -2 2 608 969 9 0 0 chr1 3034597 3034707 -194160725 + (TTC)n Simple_repeat Simple_repeat 3 112 0 2 608 4839 56 19 2 chr1 3034950 3035545 -194159887 + RLTR1D LTR ERV1 1 605 0 2 608 261 0 0 0 chr1 3035549 3035578 -194159854 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 608 598 355 17 30 chr1 3035776 3036008 -194159424 + MER44D DNA MER2_type 4 232 -473 2 608 540 283 48 0 chr1 3036032 3036219 -194159213 + MER44D DNA MER2_type 487 682 -23 2 608 3626 183 50 58 chr1 3036293 3037181 -194158251 - RLTR13C1 LTR ERVK 0 983 1 2 608 384 330 46 56 chr1 3037337 3037548 -194157884 + MER74B LTR ERVL 66 402 -220 2 608 221 235 38 38 chr1 3037568 3037621 -194157811 + ID4_ SINE ID 27 79 -4 2 608 298 274 54 46 chr1 3037904 3038046 -194157386 - MLT1A1 LTR MaLR -219 146 4 3 608 2635 179 19 63 chr1 3038379 3038968 -194156464 + Lx4B LINE L1 6477 7039 -19 3 608 1109 71 6 0 chr1 3038968 3039137 -194156295 + (TAAG)n Simple_repeat Simple_repeat 2 171 0 3 608 1145 264 24 48 chr1 3039545 3039835 -194155597 + B4A SINE B4 6 288 -4 3 608 634 310 6 67 chr1 3039964 3040238 -194155194 - BGLII_B LTR ERVK -18 423 161 3 608 200 0 0 91 chr1 3040238 3040257 -194155175 + (TTC)n Simple_repeat Simple_repeat 3 20 0 3 608 1392 56 0 0 chr1 3040257 3040435 -194154997 + (TCTCCC)n Simple_repeat Simple_repeat 2 179 0 3 608 1479 28 0 0 chr1 3040435 3040610 -194154822 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 3 608 200 0 0 91 chr1 3040610 3040622 -194154810 + (TTC)n Simple_repeat Simple_repeat 1 11 0 3 608 377 260 10 29 chr1 3040661 3040764 -194154668 - L1_Mur3 LINE L1 -6993 719 619 3 608 278 26 0 25 chr1 3040818 3040858 -194154574 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 608 938 151 7 13 chr1 3040859 3041013 -194154419 - B2_Mm2 SINE B2 -41 154 2 4 608 441 0 0 0 chr1 3041035 3041084 -194154348 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 608 401 14 0 127 chr1 3041448 3041606 -194153826 + (TTTTTG)n Simple_repeat Simple_repeat 1 138 0 4 608 814 89 0 0 chr1 3041608 3041720 -194153712 - B1_Mus1 SINE Alu 0 148 37 4 608 711 65 0 0 chr1 3041791 3041884 -194153548 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 4 608 623 239 6 6 chr1 3042081 3042237 -194153195 - Lx7 LINE L1 0 7696 7541 4 608 485 132 11 21 chr1 3042316 3042409 -194153023 + L1_Rod LINE L1 1516 1607 -4240 4 608 515 149 11 0 chr1 3042407 3042494 -194152938 + Lx9 LINE L1 6800 6887 -757 4 608 529 168 115 0 chr1 3042487 3042600 -194152832 + Lx9 LINE L1 7349 7474 -170 4 608 2960 81 28 117 chr1 3042606 3043135 -194152297 + RLTR45 LTR ERVK 1 482 0 4 608 4081 75 107 14 chr1 3043135 3043768 -194151664 + RLTR45-int LTR ERVK 1 692 -6552 4 608 1082 51 0 0 chr1 3044068 3044206 -194151226 + RLTR45-int LTR ERVK 681 818 -6426 4 608 11410 41 37 6 chr1 3045004 3046830 -194148602 + RLTR45-int LTR ERVK 1329 3212 -4032 4 608 3810 80 28 30 chr1 3046800 3047408 -194148024 + RLTR45-int LTR ERVK 3380 3986 -3258 4 608 17376 42 6 2 chr1 3047400 3049573 -194145859 + RLTR45-int LTR ERVK 5064 7244 0 4 608 3026 81 23 117 chr1 3049573 3050105 -194145327 + RLTR45 LTR ERVK 1 482 0 4 608 260 158 132 12 chr1 3050118 3050201 -194145231 + Lx9 LINE L1 7484 7576 -68 4 608 311 356 9 9 chr1 3050720 3050825 -194144607 - PB1D10 SINE Alu 0 117 13 5 608 496 312 50 60 chr1 3051017 3051257 -194144175 - ORR1E LTR MaLR -111 248 13 5 608 22 0 0 0 chr1 3052013 3052035 -194143397 + AT_rich Low_complexity Low_complexity 1 22 0 5 608 405 0 0 0 chr1 3052204 3052249 -194143183 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 608 2488 112 98 16 chr1 3052754 3053142 -194142290 - RLTR9B2 LTR ERVK 0 420 1 5 608 423 0 0 0 chr1 3053404 3053451 -194141981 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 608 1286 57 0 0 chr1 3053451 3053610 -194141822 - B2_Mm1t SINE B2 -33 160 2 5 608 318 230 74 66 chr1 3053759 3053880 -194141552 - PB1 SINE Alu -2 125 4 5 608 267 327 164 9 chr1 3053896 3054109 -194141323 + Charlie2b DNA MER1_type 80 325 -2457 5 608 733 149 11 0 chr1 3054328 3054503 -194140929 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 5 608 384 97 0 0 chr1 3054505 3054567 -194140865 + (TATG)n Simple_repeat Simple_repeat 2 63 0 6 608 1195 278 28 0 chr1 3054589 3054913 -194140519 - Lx8 LINE L1 -153 7320 6988 6 608 21 0 0 0 chr1 3054918 3054939 -194140493 + AT_rich Low_complexity Low_complexity 1 21 0 6 608 31505 97 5 6 chr1 3054939 3060895 -194134537 - L1Md_F2 LINE L1 -2 6564 590 6 608 766 267 226 3 chr1 3060910 3061229 -194134203 - Lx8 LINE L1 -801 6672 6283 6 608 314 238 71 0 chr1 3061381 3061465 -194133967 - MTEa LTR MaLR 0 379 290 6 608 249 98 0 0 chr1 3062484 3062525 -194132907 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 608 459 378 13 19 chr1 3062530 3062684 -194132748 - RSINE1 SINE B4 -9 156 4 6 608 432 270 0 22 chr1 3062751 3062842 -194132590 - MTEa LTR MaLR -84 295 207 6 608 308 23 0 43 chr1 3062878 3062924 -194132508 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 608 417 361 0 29 chr1 3062927 3063064 -194132368 - B1F SINE Alu -1 148 16 6 608 316 175 151 111 chr1 3063067 3063119 -194132313 + Charlie2b DNA MER1_type 2267 2319 -463 5 608 1746 115 7 4 chr1 3063119 3063389 -194132043 + L1_Mus3 LINE L1 6365 6635 -3 6 608 316 175 151 111 chr1 3063389 3063535 -194131897 + Charlie2b DNA MER1_type 2320 2473 -309 5 608 361 257 114 0 chr1 3064831 3064936 -194130496 - PB1 SINE Alu -5 122 6 7 608 227 247 9 142 chr1 3064860 3064973 -194130459 - B4A SINE B4 -132 160 63 7 608 538 266 6 23 chr1 3065248 3065425 -194130007 + Lx9 LINE L1 2581 2754 -3093 7 608 4618 249 94 85 chr1 3065434 3067007 -194128425 + Lx9 LINE L1 3160 4626 -1221 7 608 4321 28 0 0 chr1 3067007 3067500 -194127932 - MT2_Mm LTR ERVL 0 493 1 7 608 4618 261 97 59 chr1 3067500 3068749 -194126683 + Lx9 LINE L1 4627 6029 -1444 7 608 288 0 0 0 chr1 3068749 3068781 -194126651 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 608 1238 298 159 9 chr1 3068781 3069386 -194126046 + Lx9 LINE L1 6030 6874 -770 7 608 868 110 13 13 chr1 3069400 3069557 -194125875 + L1_Mus3 LINE L1 6478 6634 -4 7 608 468 0 0 0 chr1 3069575 3069627 -194125805 + (GAA)n Simple_repeat Simple_repeat 2 53 0 7 608 1459 303 40 25 chr1 3069628 3070176 -194125256 + Lx9 LINE L1 6886 7441 -203 7 608 206 62 31 0 chr1 3070192 3070224 -194125208 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 608 7941 140 7 2 chr1 3070261 3071682 -194123750 + L1_Mur1 LINE L1 1226 2653 -3233 7 608 4143 144 39 9 chr1 3071678 3072469 -194122963 + L1_Mur1 LINE L1 4798 5612 -274 7 608 925 97 13 13 chr1 3072516 3072672 -194122760 + L1_Mus3 LINE L1 6481 6636 -2 7 608 26 50 0 0 chr1 3072672 3072712 -194122720 + AT_rich Low_complexity Low_complexity 1 40 0 8 608 2445 156 131 47 chr1 3072720 3073230 -194122202 + RMER4B LTR ERVK 33 585 0 8 608 1260 56 0 0 chr1 3073244 3073405 -194122027 + (TC)n Simple_repeat Simple_repeat 2 162 0 8 608 2495 94 56 0 chr1 3073407 3073747 -194121685 + RLTR10D LTR ERVK 1 359 0 8 608 1005 137 0 0 chr1 3073844 3073990 -194121442 + B1_Mus1 SINE Alu 3 148 0 8 608 198 0 0 0 chr1 3073990 3074012 -194121420 + (A)n Simple_repeat Simple_repeat 1 22 0 8 608 6591 168 10 14 chr1 3074014 3074141 -194121291 + Lx LINE L1 4608 4731 -1152 8 608 201 39 0 0 chr1 3074141 3074167 -194121265 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 608 6591 143 8 10 chr1 3074167 3075398 -194120034 + Lx LINE L1 4732 5961 -693 8 608 4242 72 0 29 chr1 3075401 3076166 -194119266 + L1Md_A LINE L1 1089 1811 -4072 8 608 397 277 113 11 chr1 3076438 3076624 -194118808 - MER119 DNA MER1_type -180 403 199 8 608 890 114 13 13 chr1 3076705 3076856 -194118576 - L1_Mus3 LINE L1 -7 6631 6481 9 608 1188 48 7 0 chr1 3076876 3077022 -194118410 + B1_Mm SINE Alu 1 147 0 9 608 3545 132 63 16 chr1 3077108 3077729 -194117703 - Lx LINE L1 -7 6647 5998 9 608 34087 58 3 4 chr1 3077739 3081063 -194114369 - L1Md_F2 LINE L1 -13 6572 3250 9 608 5858 45 0 0 chr1 3081063 3081766 -194113666 + L1Md_T LINE L1 5880 6582 0 9 608 34087 68 3 3 chr1 3081766 3084126 -194111306 - L1Md_F2 LINE L1 -2637 3249 794 9 608 605 180 345 0 chr1 3084126 3084358 -194111074 - L1Md_F2 LINE L1 -5987 632 321 9 608 353 221 46 11 chr1 3084358 3084445 -194110987 + RSINE1 SINE B4 43 132 -33 9 608 567 43 0 0 chr1 3084447 3084517 -194110915 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 608 216 0 0 0 chr1 3086006 3086030 -194109402 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 9 608 208 205 0 0 chr1 3086188 3086227 -194109205 + L2a LINE L2 3038 3076 -350 9 608 5745 64 3 3 chr1 3086228 3087126 -194108306 + L1Md_F2 LINE L1 5830 6582 0 9 608 199 93 47 0 chr1 3087541 3087584 -194107848 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 608 1455 220 138 4 chr1 3087587 3087948 -194107484 + MTD LTR MaLR 12 401 -18 1 608 392 51 0 17 chr1 3088547 3088607 -194106825 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 608 1028 109 0 0 chr1 3088607 3088744 -194106688 - B1_Mus1 SINE Alu -10 138 2 1 608 2912 28 0 0 chr1 3088748 3089103 -194106329 + L1Md_F2 LINE L1 5232 5586 -297 1 608 8205 42 2 2 chr1 3089103 3090099 -194105333 + L1Md_F2 LINE L1 5587 6582 0 1 608 984 223 74 42 chr1 3090099 3090314 -194105118 + MTC LTR MaLR 200 421 0 1 608 607 95 0 0 chr1 3092096 3092180 -194103252 + U6 snRNA snRNA 1 84 -23 1 608 356 304 77 67 chr1 3092560 3092763 -194102669 + L1M5 LINE L1 2265 2486 -3660 1 608 1182 54 7 0 chr1 3092763 3092910 -194102522 + B1_Mus1 SINE Alu 1 148 0 1 608 356 304 77 67 chr1 3092910 3092991 -194102441 + L1M5 LINE L1 2487 2552 -3594 1 608 379 264 80 10 chr1 3093063 3093310 -194102122 + L1M5 LINE L1 2666 2950 -3196 1 608 22 0 0 0 chr1 3093343 3093365 -194102067 + AT_rich Low_complexity Low_complexity 1 22 0 1 608 227 0 91 0 chr1 3093418 3093451 -194101981 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 1 608 348 308 43 19 chr1 3093451 3093613 -194101819 + L1M5 LINE L1 3073 3238 -2908 1 608 266 317 70 28 chr1 3093631 3093774 -194101658 + B1F2 SINE Alu 1 149 0 1 608 305 300 0 0 chr1 3093782 3093862 -194101570 + L1M5 LINE L1 3252 3331 -2815 1 608 901 283 98 24 chr1 3093868 3094237 -194101195 + MLT1A1 LTR MaLR 1 396 -12 1 608 650 354 70 12 chr1 3094334 3094577 -194100855 + B4A SINE B4 1 257 -35 1 608 311 288 68 14 chr1 3094786 3094934 -194100498 + L1MEg LINE L1 1797 1952 -4132 1 608 944 278 76 25 chr1 3094943 3095271 -194100161 + Lx5 LINE L1 6672 7046 -12 1 608 310 303 167 9 chr1 3095307 3095684 -194099748 + L1M5 LINE L1 4822 5249 -897 1 608 314 295 8 24 chr1 3095972 3096097 -194099335 + L1M5 LINE L1 5623 5745 -419 1 608 32714 87 3 7 chr1 3096316 3102490 -194092942 - L1Md_F2 LINE L1 0 6582 217 1 608 703 263 88 17 chr1 3102579 3102873 -194092559 + L1MB7 LINE L1 5789 6103 -81 1 608 258 232 134 99 chr1 3103535 3103707 -194091725 + MTEb LTR MaLR 2 179 -200 1 608 497 321 71 56 chr1 3104102 3104300 -194091132 - B3A SINE B2 -1 215 15 1 608 2053 179 60 12 chr1 3104349 3104751 -194090681 - MTC LTR MaLR 0 421 1 1 608 294 294 6 134 chr1 3105762 3105919 -194089513 + B1_Mus1 SINE Alu 6 142 -6 1 608 670 270 90 74 chr1 3105982 3106509 -194088923 + Lx7 LINE L1 5352 5914 -1782 1 608 531 0 0 0 chr1 3106535 3106594 -194088838 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 608 280 348 0 26 chr1 3108073 3108192 -194087240 + MLT1A1 LTR MaLR 181 334 -74 1 608 1019 252 5 0 chr1 3108223 3108433 -194086999 + B3 SINE B2 1 211 -5 1 608 344 260 31 10 chr1 3108566 3108663 -194086769 - RMER15 LTR ERVL -75 500 402 1 608 1444 238 78 79 chr1 3108680 3109209 -194086223 + RLTR20A LTR ERVK 13 540 -1 1 608 330 324 27 14 chr1 3109712 3109859 -194085573 - B1F1 SINE Alu 0 149 1 1 608 232 287 8 92 chr1 3111306 3111425 -194084007 - MLT1A LTR MaLR 0 374 266 1 608 1857 128 9 51 chr1 3111710 3112046 -194083386 - RLTRETN_Mm LTR ERVK 0 322 1 1 608 292 290 5 0 chr1 3112046 3112235 -194083197 + (CA)n Simple_repeat Simple_repeat 1 190 0 1 608 306 0 0 0 chr1 3112238 3112272 -194083160 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 608 255 289 0 0 chr1 3112281 3112371 -194083061 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 608 3406 217 98 5 chr1 3112447 3113325 -194082107 - Lx9 LINE L1 -6 7638 6679 1 608 455 259 25 0 chr1 3113321 3113479 -194081953 + L1_Rod LINE L1 2903 3064 -2783 1 608 3457 206 13 30 chr1 3113483 3113937 -194081495 + RMER1B Other Other 354 778 -288 1 608 4328 95 0 8 chr1 3113937 3114541 -194080891 + L1_Mus1 LINE L1 5968 6566 -1 1 608 3457 196 14 26 chr1 3114541 3114835 -194080597 + RMER1B Other Other 779 1062 -4 1 608 1947 251 76 43 chr1 3114848 3115421 -194080011 + L1_Rod LINE L1 3083 3655 -2192 1 608 519 0 0 40 chr1 3115421 3115495 -194079937 + (CAA)n Simple_repeat Simple_repeat 3 73 0 1 608 1947 251 76 43 chr1 3115495 3115812 -194079620 + L1_Rod LINE L1 3656 4002 -1845 1 608 24 32 0 0 chr1 3115825 3115856 -194079576 + AT_rich Low_complexity Low_complexity 1 31 0 1 608 8800 97 30 20 chr1 3115856 3118324 -194077108 - Lx3A LINE L1 -28 6953 4464 1 608 716 304 46 32 chr1 3118333 3118618 -194076814 - MLT1B LTR MaLR -59 331 43 1 608 813 296 0 14 chr1 3120317 3120370 -194075062 - B3 SINE B2 -10 206 156 1 608 444 19 0 0 chr1 3120370 3120423 -194075009 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 608 813 296 0 14 chr1 3120423 3120578 -194074854 - B3 SINE B2 -61 155 1 1 608 2698 299 82 29 chr1 3120875 3121425 -194074007 - Lx8 LINE L1 -5 7468 6876 1 608 2686 108 7 15 chr1 3121425 3121828 -194073604 + MTB LTR MaLR 1 400 0 1 608 2698 299 82 29 chr1 3121828 3122495 -194072937 - Lx8 LINE L1 -598 6875 6186 1 608 245 268 17 10 chr1 3122873 3122977 -194072455 - Lx8 LINE L1 -1524 5949 5843 1 608 2456 200 23 38 chr1 3123014 3123570 -194071862 - Lx4B LINE L1 -2 7056 6509 1 608 284 146 0 0 chr1 3123571 3123619 -194071813 - L1_Mur2 LINE L1 -6453 259 212 1 608 609 198 30 24 chr1 3123633 3123799 -194071633 - Lx8 LINE L1 -425 5455 5289 1 608 1157 101 12 6 chr1 3123799 3123968 -194071464 - B2_Mm2 SINE B2 -7 188 19 1 608 235 326 51 28 chr1 3124015 3124192 -194071240 - L1_Rod LINE L1 -704 5143 4963 1 608 396 0 0 0 chr1 3124199 3124243 -194071189 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 608 343 338 22 14 chr1 3124477 3124615 -194070817 + B1F SINE Alu 8 146 -3 1 608 269 333 13 0 chr1 3124625 3124700 -194070732 + ID4_ SINE ID 2 77 -6 1 608 570 29 0 0 chr1 3125026 3125094 -194070338 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 608 958 284 82 41 chr1 3126103 3126419 -194069013 + MTEa LTR MaLR 51 379 0 1 608 360 298 41 8 chr1 3126427 3126549 -194068883 + MLT1C LTR MaLR 20 145 -322 1 608 8567 4 0 0 chr1 3126665 3127837 -194067595 - L1Md_A LINE L1 0 6582 5411 1 608 15764 9 0 0 chr1 3127840 3129718 -194065714 + L1_Mm LINE L1 3617 5494 -389 1 608 24 32 0 0 chr1 3129767 3129798 -194065634 + AT_rich Low_complexity Low_complexity 1 31 0 1 608 311 228 0 0 chr1 3129808 3129882 -194065550 + MLT1C LTR MaLR 307 370 -4 1 608 6918 98 14 3 chr1 3130036 3131726 -194063706 - L1_Mus1 LINE L1 0 6567 4863 1 608 9280 102 0 10 chr1 3131725 3133171 -194062261 + L1_Mm LINE L1 2155 3586 -2297 1 608 2310 109 23 3 chr1 3133173 3133523 -194061909 - IAPEY2_LTR LTR ERVK 0 357 1 1 608 5066 104 5 8 chr1 3133523 3134304 -194061128 - IAPEy-int LTR ERVK 0 7513 6735 1 608 3217 83 13 2 chr1 3134294 3134743 -194060689 - IAPEy-int LTR ERVK -1367 6214 5761 1 608 3157 95 0 16 chr1 3134734 3135182 -194060250 - IAPEy-int LTR ERVK -1939 5642 5202 1 608 532 110 12 0 chr1 3135460 3135542 -194059890 - IAPEy-int LTR ERVK -2932 4649 4567 1 608 420 92 0 44 chr1 3135529 3135597 -194059835 - IAPEy-int LTR ERVK -3775 3631 3567 1 608 604 202 0 0 chr1 3135623 3135742 -194059690 - IAPEy-int LTR ERVK -4653 2753 2635 1 608 256 247 11 56 chr1 3135754 3135844 -194059588 - IAPEy-int LTR ERVK -4867 2539 2454 1 608 434 230 88 0 chr1 3135857 3135970 -194059462 - RLTR19-int LTR ERVK -5077 1060 938 1 608 1510 179 95 47 chr1 3136018 3136460 -194058972 - IAPEy-int LTR ERVK -4750 656 251 1 608 23 54 0 0 chr1 3136660 3136697 -194058735 + AT_rich Low_complexity Low_complexity 1 37 0 1 608 840 153 178 0 chr1 3136698 3136984 -194058448 - IAPEy-int LTR ERVK -6932 748 412 1 608 1886 149 20 112 chr1 3137444 3137898 -194057534 - IAPEy-int LTR ERVK -7101 412 1 1 608 2063 145 0 6 chr1 3137898 3138232 -194057200 - IAPEY3_LTR LTR ERVK 0 332 1 1 608 11580 83 20 5 chr1 3138232 3139946 -194055486 + L1_Mm LINE L1 3583 5323 -560 1 608 5265 92 11 21 chr1 3139946 3140769 -194054663 + L1Md_Gf LINE L1 221 1035 -5487 1 608 2813 19 3 0 chr1 3140769 3141090 -194054342 + RLTRETN_Mm LTR ERVK 1 322 0 1 9 38764 30 5 6 chr1 3141090 3145940 -194049492 + MMETn-int LTR ERVK 1 4844 0 1 609 2787 16 3 0 chr1 3145940 3146261 -194049171 + RLTRETN_Mm LTR ERVK 1 322 0 1 609 29986 77 14 1 chr1 3146261 3150670 -194044762 + L1Md_Gf LINE L1 1126 5589 -297 1 609 7816 56 1 7 chr1 3150670 3151658 -194043774 + L1Md_F2 LINE L1 5587 6568 -14 1 609 32 26 0 0 chr1 3151666 3151705 -194043727 + AT_rich Low_complexity Low_complexity 1 39 0 1 609 1174 104 0 0 chr1 3151705 3151878 -194043554 - L1_Mm LINE L1 -1008 4875 4703 1 609 267 242 16 0 chr1 3152026 3152088 -194043344 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 609 364 253 41 29 chr1 3152092 3152263 -194043169 + Lx8 LINE L1 7296 7468 -5 1 609 238 343 147 11 chr1 3152913 3153090 -194042342 + ORR1E LTR MaLR 1 201 -158 1 609 367 52 17 17 chr1 3153775 3153834 -194041598 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 609 253 287 122 122 chr1 3153936 3154237 -194041195 - MTEb LTR MaLR -14 365 46 1 609 301 306 0 12 chr1 3154356 3154442 -194040990 + GA-rich Low_complexity Low_complexity 6 90 0 1 609 225 257 0 14 chr1 3154505 3154576 -194040856 + CT-rich Low_complexity Low_complexity 3 72 0 1 609 489 316 128 44 chr1 3155372 3155802 -194039630 + MLT1D LTR MaLR 4 500 -5 1 609 250 326 22 11 chr1 3156833 3156923 -194038509 - Tigger7 DNA MER2_type -2089 402 312 1 609 469 279 145 22 chr1 3156945 3157172 -194038260 - Tigger7 DNA MER2_type -2229 262 8 1 609 646 348 33 74 chr1 3158389 3158755 -194036677 + MLT1A LTR MaLR 4 354 -20 1 609 330 26 0 0 chr1 3159305 3159344 -194036088 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 609 22 99 0 0 chr1 3159344 3159415 -194036017 + AT_rich Low_complexity Low_complexity 1 71 0 1 609 647 313 38 4 chr1 3159621 3159884 -194035548 - ALINE LINE RTE -168 449 178 1 609 335 269 75 0 chr1 3160419 3160512 -194034920 + MER45C DNA Tip100 53 152 -801 1 609 252 59 0 0 chr1 3160618 3160652 -194034780 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 609 3229 186 50 16 chr1 3160702 3161407 -194034025 + L1VL4 LINE L1 190 918 -5384 1 609 918 236 66 62 chr1 3161407 3161984 -194033448 + L1_Mur1 LINE L1 2 825 -6157 1 609 13133 145 12 5 chr1 3162009 3165329 -194030103 + L1_Mus4 LINE L1 3294 6636 0 1 609 4105 78 0 11 chr1 3165336 3165597 -194029835 + L1_Mus1 LINE L1 6030 6290 -277 1 609 4218 11 36 0 chr1 3165597 3166073 -194029359 - MT2_Mm LTR ERVL 0 493 1 1 609 4105 78 0 11 chr1 3166073 3166355 -194029077 + L1_Mus1 LINE L1 6291 6567 0 1 609 180 111 0 0 chr1 3166360 3166387 -194029045 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 609 297 128 0 0 chr1 3166480 3166527 -194028905 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 609 1472 158 170 42 chr1 3166713 3167185 -194028247 + RLTR6_Mm LTR ERV1 37 653 -1 1 609 8066 26 0 0 chr1 3167981 3168945 -194026487 - L1_Mm LINE L1 -2633 3250 2287 1 609 5865 19 0 0 chr1 3168941 3169622 -194025810 + L1Md_A LINE L1 4905 5585 -298 1 609 8420 34 0 0 chr1 3169623 3170619 -194024813 + L1Md_A LINE L1 5587 6582 0 1 609 21 0 0 0 chr1 3170743 3170764 -194024668 + AT_rich Low_complexity Low_complexity 1 21 0 1 609 24 53 0 0 chr1 3171105 3171143 -194024289 + AT_rich Low_complexity Low_complexity 1 38 0 1 609 644 273 11 37 chr1 3171143 3171421 -194024011 - Lx9 LINE L1 -832 6812 6403 1 609 603 299 136 9 chr1 3172042 3172126 -194023306 - L1MA4A LINE L1 -423 5880 5794 1 609 555 16 0 0 chr1 3172126 3172190 -194023242 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 609 603 299 136 9 chr1 3172190 3172429 -194023003 - L1MA4A LINE L1 -510 5793 5518 1 609 564 273 0 77 chr1 3172447 3172590 -194022842 - RSINE1 SINE B4 -32 133 2 2 609 1188 283 60 62 chr1 3172613 3173160 -194022272 - L1MB3 LINE L1 -2 6181 5636 2 609 806 285 107 43 chr1 3173195 3173831 -194021601 - L1MA4A LINE L1 -789 5354 4616 1 609 472 325 15 54 chr1 3173825 3174085 -194021347 - L1MA4A LINE L1 -1983 4160 3911 1 609 266 73 0 24 chr1 3174205 3174247 -194021185 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 609 964 307 22 31 chr1 3174247 3174598 -194020834 - Lx9 LINE L1 -1558 5915 5534 1 609 192 77 0 0 chr1 3174598 3174624 -194020808 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 609 964 305 21 32 chr1 3174624 3174787 -194020645 - Lx9 LINE L1 -314 5533 5370 1 609 6147 184 105 45 chr1 3174794 3175223 -194020209 - Lx2 LINE L1 -352 6645 6088 2 609 4098 155 29 99 chr1 3175223 3176197 -194019235 - RMER17A2 LTR ERVK 0 906 1 2 609 6147 152 30 14 chr1 3176197 3177341 -194018091 - Lx2 LINE L1 -562 6435 5258 2 609 5700 93 7 73 chr1 3177336 3178017 -194017415 - L1VL4 LINE L1 -1743 1816 1148 2 609 4067 67 7 11 chr1 3178017 3178561 -194016871 - L1Md_F2 LINE L1 0 6582 6041 2 609 5700 102 19 37 chr1 3178561 3179269 -194016163 - L1VL4 LINE L1 -2412 1147 480 2 609 228 312 128 54 chr1 3179269 3179472 -194015960 - LTR81B LTR ERV1? -266 1127 910 2 609 444 216 11 0 chr1 3179472 3179560 -194015872 - MusHAL1 LINE L1 -3077 277 189 2 609 432 0 0 0 chr1 3179560 3179608 -194015824 + (TTA)n Simple_repeat Simple_repeat 1 48 0 2 609 555 263 199 0 chr1 3179610 3179781 -194015651 - B3 SINE B2 -10 206 2 2 609 645 201 7 72 chr1 3179818 3180014 -194015418 + ORR1B1 LTR MaLR 1 188 -196 2 609 417 251 116 30 chr1 3180014 3180412 -194015020 - L1_Mur3 LINE L1 -796 5347 4910 2 609 533 211 46 66 chr1 3180418 3180571 -194014861 - Lx6 LINE L1 -225 7235 7105 2 609 241 237 0 0 chr1 3180794 3180853 -194014579 + CT-rich Low_complexity Low_complexity 1 59 0 2 609 522 43 0 0 chr1 3180855 3180924 -194014508 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 609 420 252 9 28 chr1 3181174 3181280 -194014152 - RSINE1 SINE B4 -24 141 38 2 609 931 277 96 24 chr1 3181331 3181409 -194014023 - L1M2 LINE L1 -525 5766 5694 2 609 3509 177 42 48 chr1 3181409 3182269 -194013163 + RLTR13A LTR ERVK 1 855 0 2 609 931 277 96 24 chr1 3182269 3182649 -194012783 - L1M2 LINE L1 -598 5693 5275 2 609 333 118 0 0 chr1 3182710 3182761 -194012671 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 609 186 267 0 0 chr1 3182763 3182864 -194012568 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 609 327 261 0 26 chr1 3182868 3182982 -194012450 + (TATG)n Simple_repeat Simple_repeat 4 114 0 2 609 774 141 0 0 chr1 3183006 3183148 -194012284 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 609 1878 224 105 28 chr1 3183154 3183599 -194011833 + RLTR20B3 LTR ERVK 1 470 -107 2 609 333 0 0 0 chr1 3183599 3183636 -194011796 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 609 1878 224 105 28 chr1 3183636 3183694 -194011738 + RLTR20B3 LTR ERVK 471 542 -35 2 609 567 133 0 0 chr1 3183706 3183811 -194011621 + (TG)n Simple_repeat Simple_repeat 1 105 0 2 609 1878 224 105 28 chr1 3183817 3184262 -194011170 + RLTR20B3 LTR ERVK 1 470 -107 2 609 441 0 0 0 chr1 3184262 3184311 -194011121 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 609 1878 224 105 28 chr1 3184311 3184369 -194011063 + RLTR20B3 LTR ERVK 471 542 -35 2 609 285 29 0 0 chr1 3184381 3184415 -194011017 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 609 969 300 15 23 chr1 3184425 3184691 -194010741 - B4A SINE B4 -23 269 6 2 609 22 56 0 0 chr1 3184876 3184912 -194010520 + AT_rich Low_complexity Low_complexity 1 36 0 2 609 1640 222 35 5 chr1 3185076 3185443 -194009989 + RLTR14 LTR ERV1 3 380 -2 2 609 205 288 0 0 chr1 3186582 3186641 -194008791 + T-rich Low_complexity Low_complexity 1 59 0 2 609 434 216 25 13 chr1 3186750 3186909 -194008523 + (TA)n Simple_repeat Simple_repeat 2 162 0 2 609 543 309 70 43 chr1 3187001 3187258 -194008174 - Lx9 LINE L1 -174 7470 7207 2 609 907 235 14 9 chr1 3187961 3188176 -194007256 - B3 SINE B2 0 216 1 2 609 24 67 0 0 chr1 3189864 3189909 -194005523 + AT_rich Low_complexity Low_complexity 1 45 0 2 609 212 0 36 0 chr1 3191414 3191442 -194003990 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 2 609 246 256 188 61 chr1 3193416 3193645 -194001787 - MIRb SINE MIR -10 258 1 2 609 243 0 0 0 chr1 3197720 3197747 -193997685 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 609 277 48 30 60 chr1 3199608 3199675 -193995757 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 2 609 252 278 144 31 chr1 3199937 3200097 -193995335 + MIRb SINE MIR 85 262 -6 2 609 234 0 0 0 chr1 3200900 3200926 -193994506 + (T)n Simple_repeat Simple_repeat 1 26 0 2 609 319 351 52 9 chr1 3201680 3201795 -193993637 - RSINE1 SINE B4 -3 162 43 2 609 941 59 35 12 chr1 3201888 3202060 -193993372 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 2 609 685 100 31 18 chr1 3202074 3202299 -193993133 + (TCTA)n Simple_repeat Simple_repeat 1 228 0 2 609 451 326 38 30 chr1 3202321 3202454 -193992978 - RSINE1 SINE B4 -18 147 14 2 609 947 200 137 0 chr1 3205543 3205733 -193989699 - B3 SINE B2 0 216 1 2 609 309 26 0 0 chr1 3209356 3209394 -193986038 + (TTA)n Simple_repeat Simple_repeat 3 40 0 2 609 384 309 65 69 chr1 3210109 3210527 -193984905 - L1MC4 LINE L1 -184 7858 7443 2 609 654 94 17 8 chr1 3211923 3212041 -193983391 + (TTCTC)n Simple_repeat Simple_repeat 2 120 0 2 609 1063 116 55 11 chr1 3212829 3213012 -193982420 - B2_Mm2 SINE B2 -2 193 3 2 609 186 133 0 0 chr1 3214330 3214360 -193981072 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 609 4755 85 9 0 chr1 3215104 3215750 -193979682 + L1_Mus1 LINE L1 5914 6565 -2 2 609 295 291 125 10 chr1 3216362 3216466 -193978966 - MER58B DNA MER1_type -11 330 215 2 609 387 41 0 0 chr1 3217913 3217962 -193977470 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 609 324 271 23 23 chr1 3218702 3218789 -193976643 + RLTR9A LTR ERVK 3 89 -279 2 609 465 258 128 69 chr1 3218825 3219029 -193976403 + RLTR9A LTR ERVK 153 368 0 2 609 275 65 22 0 chr1 3219311 3219357 -193976075 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 2 609 4421 73 0 0 chr1 3219421 3220005 -193975427 + L1_Mm LINE L1 5241 5802 -81 2 609 17197 72 0 0 chr1 3220025 3220741 -193974691 + L1Md_F2 LINE L1 535 1249 -4634 2 609 372 22 0 0 chr1 3220741 3220786 -193974646 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 609 25275 90 11 5 chr1 3220786 3225110 -193970322 + L1Md_F2 LINE L1 1250 5586 -297 2 609 7189 73 8 6 chr1 3225113 3226081 -193969351 + L1Md_F2 LINE L1 5612 6581 -1 2 609 5719 73 26 8 chr1 3226086 3226860 -193968572 + L1Md_F2 LINE L1 5783 6570 -12 2 609 651 26 0 0 chr1 3226864 3226941 -193968491 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 609 287 65 22 0 chr1 3226950 3226996 -193968436 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 2 609 3940 187 114 23 chr1 3227012 3227961 -193967471 + RMER16-int LTR ERVK 299 1333 -4073 2 609 36545 42 1 1 chr1 3227966 3233898 -193961534 - L1Md_A LINE L1 0 6585 563 2 609 930 258 15 38 chr1 3233919 3234185 -193961247 + RMER16-int LTR ERVK 1320 1579 -3827 2 609 5055 164 69 43 chr1 3234378 3237159 -193958273 + RMER16-int LTR ERVK 1630 4337 -1069 2 609 369 288 7 0 chr1 3237155 3237301 -193958131 + RLTR6-int LTR ERV1 7384 7530 -248 2 609 260 242 43 92 chr1 3237582 3237723 -193957709 + IAP-d-int LTR ERVK 6377 6510 -32 2 609 491 277 153 28 chr1 3237837 3238164 -193957268 + RLTR9A LTR ERVK 1 368 0 2 609 676 296 75 104 chr1 3238305 3238679 -193956753 + MTEa LTR MaLR 3 365 -14 2 609 2770 222 71 148 chr1 3240499 3240642 -193954790 - RMER1A Other Other -2 1028 879 2 609 183 80 0 0 chr1 3240642 3240667 -193954765 + (CCA)n Simple_repeat Simple_repeat 1 25 0 2 609 2770 222 71 148 chr1 3240667 3241587 -193953845 - RMER1A Other Other -152 878 47 2 609 1152 268 13 16 chr1 3241598 3241909 -193953523 - RMER1B Other Other -750 316 7 2 609 446 307 8 23 chr1 3243387 3243517 -193951915 + B1F2 SINE Alu 1 128 -21 2 609 452 280 31 23 chr1 3243845 3243973 -193951459 - B1F2 SINE Alu -20 129 1 2 609 22 0 0 0 chr1 3244208 3244230 -193951202 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 206 391 124 38 chr1 3244789 3244999 -193950433 + L2b LINE L2 3129 3356 -19 2 609 506 93 12 0 chr1 3246120 3246206 -193949226 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 609 374 164 70 35 chr1 3246206 3246320 -193949112 + Lx9 LINE L1 7527 7644 0 2 609 975 284 56 28 chr1 3246719 3247288 -193948144 + L1M3 LINE L1 3211 3795 -2345 2 609 272 200 14 0 chr1 3247550 3247620 -193947812 + (ATG)n Simple_repeat Simple_repeat 3 73 0 2 609 341 253 0 0 chr1 3247754 3247841 -193947591 + L1MB3 LINE L1 6003 6089 -94 2 609 1300 156 14 0 chr1 3247845 3248063 -193947369 + URR1A DNA MER1_type 6 226 0 2 609 24880 105 16 2 chr1 3248164 3252789 -193942643 + L1_Mus1 LINE L1 1890 6567 0 2 609 663 336 40 44 chr1 3253142 3253369 -193942063 - B4A SINE B4 -1 291 66 2 609 22 35 0 0 chr1 3253689 3253718 -193941714 + AT_rich Low_complexity Low_complexity 1 29 0 2 609 5196 117 25 10 chr1 3253726 3253871 -193941561 - Lx LINE L1 -6 6648 6510 2 609 1341 199 55 77 chr1 3253871 3254273 -193941159 + RLTR9C LTR ERVK 1 393 0 2 609 5196 117 25 10 chr1 3254273 3254911 -193940521 - Lx LINE L1 -145 6509 5853 2 609 423 0 0 0 chr1 3256741 3256788 -193938644 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 609 360 0 0 0 chr1 3256788 3256827 -193938605 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 609 210 360 59 34 chr1 3256844 3257048 -193938384 - L2 LINE L2 -526 2893 2685 2 609 462 61 0 0 chr1 3258448 3258514 -193936918 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 609 271 320 50 87 chr1 3258645 3258806 -193936626 - MTC LTR MaLR -4 375 221 2 609 1022 252 75 24 chr1 3258810 3258881 -193936551 - Lx9 LINE L1 -75 7569 7485 2 609 507 122 0 0 chr1 3258881 3258971 -193936461 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 609 1022 252 75 24 chr1 3258971 3259273 -193936159 - Lx9 LINE L1 -160 7484 7177 2 609 402 247 80 6 chr1 3259395 3259558 -193935874 - L1MC LINE L1 -816 5330 5156 2 609 180 220 55 91 chr1 3259796 3259851 -193935581 + L3 LINE CR1 4428 4480 -9 2 609 307 314 78 30 chr1 3259945 3260241 -193935191 - L1MC2 LINE L1 -107 6237 5928 2 609 331 244 105 10 chr1 3260247 3260344 -193935088 - MTC LTR MaLR -320 101 5 2 609 384 123 15 0 chr1 3260863 3260928 -193934504 + L1VL1 LINE L1 250 315 -6323 2 609 17013 98 7 2 chr1 3260923 3264229 -193931203 + L1VL1 LINE L1 638 3963 -1920 2 609 1922 109 28 22 chr1 3264229 3264549 -193930883 + RLTRETN_Mm LTR ERVK 1 322 0 2 609 13660 168 22 11 chr1 3264549 3269796 -193925636 + ETnERV-int LTR ERVK 1 5961 -1445 2 609 3207 43 12 12 chr1 3269776 3270196 -193925236 + ETnERV-int LTR ERVK 2895 3314 0 2 609 1896 115 28 22 chr1 3270196 3270516 -193924916 + RLTRETN_Mm LTR ERVK 1 322 0 2 609 12660 103 7 3 chr1 3270516 3273115 -193922317 + L1_Mus1 LINE L1 3958 6567 0 3 609 398 307 161 34 chr1 3273133 3273611 -193921821 + Charlie2b DNA MER1_type 2204 2742 -40 3 609 558 324 70 142 chr1 3273629 3273786 -193921646 - MTEa LTR MaLR -8 371 204 3 609 228 35 0 0 chr1 3273786 3273815 -193921617 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 609 558 324 70 142 chr1 3273815 3274057 -193921375 - MTEa LTR MaLR -176 203 1 3 609 1572 194 9 34 chr1 3274217 3274522 -193920910 + Lx4A LINE L1 6705 6998 -60 3 609 387 0 0 0 chr1 3274522 3274565 -193920867 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 609 1572 194 9 34 chr1 3274565 3274585 -193920847 + Lx4A LINE L1 6999 7021 -37 3 609 285 98 0 0 chr1 3274593 3274634 -193920798 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 3 609 270 95 0 0 chr1 3274843 3274885 -193920547 + (GGA)n Simple_repeat Simple_repeat 2 43 0 3 609 787 293 103 40 chr1 3275078 3275380 -193920052 - ORR1E LTR MaLR -29 330 10 3 609 750 259 196 18 chr1 3275383 3275838 -193919594 + L1MC1 LINE L1 5362 5897 -436 3 609 736 280 56 64 chr1 3275850 3276211 -193919221 + MTE2a LTR MaLR 3 419 0 3 609 1715 166 66 46 chr1 3276161 3276508 -193918924 - ORR1B1 LTR MaLR 0 394 41 3 76 432 307 21 21 chr1 3276673 3276813 -193918619 - MLT2B4 LTR ERVL -360 196 57 3 610 22 0 0 0 chr1 3276826 3276848 -193918584 + AT_rich Low_complexity Low_complexity 1 22 0 3 610 350 269 99 20 chr1 3277143 3277344 -193918088 - L1MD LINE L1 -2421 3725 3509 3 610 1259 79 6 0 chr1 3277348 3277525 -193917907 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 3 610 422 206 23 8 chr1 3277525 3277607 -193917825 + polypyrimidine Low_complexity Low_complexity 52 135 0 3 610 1050 95 6 17 chr1 3277607 3277779 -193917653 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 3 610 422 206 23 8 chr1 3277779 3277823 -193917609 + polypyrimidine Low_complexity Low_complexity 7 51 0 3 610 600 240 147 80 chr1 3277866 3278369 -193917063 - L1MD LINE L1 -2713 3433 2897 3 610 2409 133 35 15 chr1 3278451 3278856 -193916576 - Lx3C LINE L1 -9 6967 6555 3 610 23 0 0 0 chr1 3279566 3279589 -193915843 + AT_rich Low_complexity Low_complexity 1 23 0 3 610 5442 58 1 1 chr1 3280815 3281507 -193913925 - L1Md_F2 LINE L1 0 6582 5891 3 610 6920 55 5 0 chr1 3281507 3282376 -193913056 + L1Md_F2 LINE L1 5011 5883 0 3 610 509 293 35 35 chr1 3282835 3283005 -193912427 + L4 LINE RTE 1748 1917 -112 3 610 231 387 29 7 chr1 3284444 3284582 -193910850 - MER5A DNA MER1_type -27 162 22 3 610 252 299 31 0 chr1 3284590 3284687 -193910745 + MER3 DNA MER1_type 27 126 -83 3 610 574 91 20 0 chr1 3284751 3284850 -193910582 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 610 21 0 0 0 chr1 3285113 3285134 -193910298 + AT_rich Low_complexity Low_complexity 1 21 0 3 610 287 257 0 0 chr1 3285683 3285757 -193909675 - Lx9 LINE L1 -5 7639 7566 3 610 223 203 17 0 chr1 3285794 3285853 -193909579 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 610 1565 186 118 3 chr1 3285854 3286193 -193909239 - Lx9 LINE L1 -293 7351 6974 3 610 658 253 58 70 chr1 3286273 3286532 -193908900 + MER2 DNA MER2_type 86 341 -4 3 610 771 311 85 14 chr1 3287862 3288853 -193906579 - L1M4 LINE L1 -758 6546 5487 3 610 246 62 0 0 chr1 3288859 3288891 -193906541 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 610 600 27 0 0 chr1 3288988 3289062 -193906370 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 610 415 344 45 79 chr1 3289107 3289461 -193905971 - L1M4 LINE L1 -4968 1936 1595 3 610 340 319 12 30 chr1 3289462 3289630 -193905802 - L1M4 LINE L1 -5846 1488 1324 3 610 828 284 78 5 chr1 3289706 3289925 -193905507 - MTD LTR MaLR -54 365 131 3 610 387 241 35 15 chr1 3290401 3290553 -193904879 - L1MA4 LINE L1 -340 5960 5800 3 610 675 117 0 0 chr1 3290576 3290679 -193904753 + (TC)n Simple_repeat Simple_repeat 1 103 0 3 610 898 61 114 0 chr1 3290679 3290811 -193904621 - B1_Mm SINE Alu 0 147 1 3 610 922 283 92 59 chr1 3291104 3291442 -193903990 + ORR1E LTR MaLR 9 357 -2 3 610 5218 103 4 3 chr1 3291858 3292618 -193902814 + L1Md_F2 LINE L1 443 1203 -5521 3 610 34958 45 1 1 chr1 3292585 3297043 -193898389 + L1Md_F2 LINE L1 1129 5585 -298 3 610 7515 61 18 1 chr1 3297044 3298010 -193897422 + L1Md_F2 LINE L1 5587 6568 -14 3 610 8653 19 0 0 chr1 3298018 3299011 -193896421 + L1Md_A LINE L1 5587 6579 -3 3 610 270 0 0 0 chr1 3299021 3299051 -193896381 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3 610 450 53 0 0 chr1 3299376 3299433 -193895999 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 3 610 630 114 0 0 chr1 3299433 3299521 -193895911 - B1_Mm SINE Alu 0 147 60 3 610 214 237 0 0 chr1 3299489 3299527 -193895905 - PB1D7 SINE Alu -27 93 56 3 610 21 36 0 0 chr1 3300048 3300076 -193895356 + AT_rich Low_complexity Low_complexity 1 28 0 3 610 29587 125 24 4 chr1 3301435 3307652 -193887780 + L1_Mus1 LINE L1 212 6561 -6 3 610 522 0 0 0 chr1 3307652 3307710 -193887722 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 610 333 0 0 0 chr1 3307710 3307746 -193887686 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 610 450 36 0 0 chr1 3307964 3308020 -193887412 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 610 307 145 62 31 chr1 3308036 3308100 -193887332 - RSINE1 SINE B4 -44 121 56 3 610 2546 297 56 23 chr1 3308684 3309538 -193885894 - Lx8 LINE L1 -274 7199 6318 3 610 198 0 0 0 chr1 3309587 3309609 -193885823 + (A)n Simple_repeat Simple_repeat 1 22 0 3 610 234 241 72 58 chr1 3309611 3309749 -193885683 + L1M3 LINE L1 4290 4463 -1677 3 610 205 51 51 0 chr1 3309900 3309939 -193885493 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 610 352 323 75 0 chr1 3309939 3310072 -193885360 - B1F SINE Alu 0 149 7 3 610 267 288 6 58 chr1 3310275 3310448 -193884984 - L1MEe LINE L1 -4312 542 379 3 610 189 213 0 0 chr1 3310602 3310649 -193884783 + CT-rich Low_complexity Low_complexity 2 48 0 3 610 265 270 11 11 chr1 3310656 3310746 -193884686 - L1MEe LINE L1 -4650 204 115 3 610 210 254 0 73 chr1 3311463 3311531 -193883901 - MIRb SINE MIR -73 195 133 3 610 222 318 0 74 chr1 3312284 3312379 -193883053 - MIR3 SINE MIR -25 183 96 3 610 195 129 0 0 chr1 3313704 3313735 -193881697 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 3 610 1766 220 19 3 chr1 3313762 3314136 -193881296 + RLTR14 LTR ERV1 3 382 0 3 610 627 304 40 0 chr1 3314206 3314354 -193881078 - B3 SINE B2 -11 205 52 3 610 292 349 7 108 chr1 3315043 3315191 -193880241 + ID_B1 SINE B4 91 223 -1 3 610 251 115 0 37 chr1 3315191 3315245 -193880187 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 3 610 432 37 0 0 chr1 3315382 3315436 -193879996 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 610 503 263 82 96 chr1 3315437 3315656 -193879776 - B4A SINE B4 -73 219 4 3 610 276 30 0 0 chr1 3315796 3315829 -193879603 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 610 450 0 0 0 chr1 3317225 3317275 -193878157 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 610 438 20 0 0 chr1 3317323 3317374 -193878058 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 610 791 103 0 0 chr1 3317439 3317555 -193877877 - L1_Mus2 LINE L1 -465 5418 5303 3 610 6408 73 0 0 chr1 3317552 3318521 -193876911 + L1_Mus2 LINE L1 5420 6388 -178 3 610 391 88 0 0 chr1 3318521 3318578 -193876854 + L1_Mus2 LINE L1 6496 6552 -14 3 610 2668 169 210 11 chr1 3318584 3319390 -193876042 + Lx4B LINE L1 794 1848 -4032 3 610 1033 110 7 0 chr1 3319390 3319536 -193875896 + B1_Mm SINE Alu 1 147 0 3 610 2135 154 391 14 chr1 3319536 3319941 -193875491 + Lx4B LINE L1 1849 2323 -3557 3 610 1667 146 34 47 chr1 3319943 3320324 -193875108 + Lx4B LINE L1 2888 3263 -2617 3 610 6188 186 27 34 chr1 3320453 3322009 -193873423 + Lx4B LINE L1 5402 6981 -19 3 610 4434 213 92 6 chr1 3322020 3323021 -193872411 + Lx7 LINE L1 5794 6880 -816 3 610 473 292 141 19 chr1 3323585 3323880 -193871552 + MLT1B LTR MaLR 8 334 -56 3 610 206 211 0 0 chr1 3324063 3324101 -193871331 + C-rich Low_complexity Low_complexity 4 41 0 3 610 561 317 30 11 chr1 3324309 3324571 -193870861 - L1MD LINE L1 -531 5711 5445 3 610 257 282 106 0 chr1 3324657 3324742 -193870690 + Lx7 LINE L1 7218 7311 -385 3 610 227 283 26 26 chr1 3324884 3325000 -193870432 - L1M5 LINE L1 -674 5450 5335 3 610 18291 143 30 14 chr1 3325070 3329327 -193866105 + L1Md_F LINE L1 98 4155 -1728 3 610 31 44 0 0 chr1 3329624 3329669 -193865763 + AT_rich Low_complexity Low_complexity 1 45 0 3 610 186 43 0 0 chr1 3329669 3329692 -193865740 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 610 4871 221 96 110 chr1 3329694 3330060 -193865372 + RMER16-int LTR ERVK 2080 2439 -4805 3 610 297 0 0 0 chr1 3330060 3330093 -193865339 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 610 9428 176 64 43 chr1 3330093 3333602 -193861830 + RMER16-int LTR ERVK 1565 4596 -2648 3 610 411 285 36 21 chr1 3333599 3333739 -193861693 + RMER16-int LTR ERVK 6086 6227 -1179 3 610 917 215 35 5 chr1 3333783 3333984 -193861448 + RMER16-int LTR ERVK 6215 6421 -985 3 610 395 57 0 36 chr1 3334202 3334257 -193861175 + RMER16-int LTR ERVK 7331 7383 -23 3 610 2342 109 120 3 chr1 3334277 3334653 -193860779 + RLTR9B2 LTR ERVK 1 420 0 3 610 339 167 0 0 chr1 3334664 3334724 -193860708 + L1_Mm LINE L1 4198 4257 -1626 3 610 37536 55 11 9 chr1 3334727 3341048 -193854384 + L1Md_T LINE L1 285 6634 -7 3 610 4214 139 35 6 chr1 3341123 3341817 -193853615 - Lx3B LINE L1 -3 6970 6257 3 610 674 108 0 0 chr1 3341850 3341952 -193853480 + Lx3C LINE L1 5863 5964 -1012 3 610 1156 279 104 40 chr1 3341950 3342846 -193852586 - L1MD LINE L1 -776 5370 4418 3 610 23 0 0 0 chr1 3344598 3344621 -193850811 + AT_rich Low_complexity Low_complexity 1 23 0 3 610 240 111 0 0 chr1 3344996 3345032 -193850400 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 610 482 242 38 68 chr1 3345183 3345316 -193850116 - B4A SINE B4 -161 131 3 3 610 309 118 0 0 chr1 3345453 3345504 -193849928 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 610 242 336 15 92 chr1 3345559 3345690 -193849742 - B4A SINE B4 -170 122 2 3 610 191 333 79 36 chr1 3346139 3346279 -193849153 + MIR SINE MIR 87 232 -30 3 610 195 42 0 0 chr1 3347278 3347302 -193848130 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 3 610 1318 89 0 6 chr1 3347302 3347483 -193847949 - B2_Mm2 SINE B2 -15 180 1 3 610 255 164 0 0 chr1 3348099 3348160 -193847272 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 610 313 348 12 60 chr1 3348217 3348385 -193847047 + MIRc SINE MIR 104 263 -5 3 610 192 77 0 0 chr1 3348864 3348890 -193846542 + (CACAG)n Simple_repeat Simple_repeat 4 29 0 3 610 355 135 6 0 chr1 3349015 3349079 -193846353 + B1_Mur4 SINE Alu 83 150 0 3 610 503 299 83 14 chr1 3349976 3350193 -193845239 - L2 LINE L2 -557 2862 2631 3 610 423 0 0 0 chr1 3350194 3350241 -193845191 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 610 215 316 0 0 chr1 3350268 3350325 -193845107 - L2 LINE L2 -861 2558 2502 3 610 504 0 0 0 chr1 3351373 3351429 -193844003 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 610 429 20 0 0 chr1 3351429 3351478 -193843954 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 610 409 289 22 39 chr1 3351568 3351748 -193843684 - MER5B DNA MER1_type -1 177 1 4 610 224 276 0 0 chr1 3352634 3352692 -193842740 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 610 763 300 86 4 chr1 3352694 3352962 -193842470 - B4A SINE B4 -2 290 1 4 610 578 324 7 0 chr1 3353079 3353215 -193842217 - B1F SINE Alu -10 139 3 4 610 1275 261 41 19 chr1 3354397 3354764 -193840668 + MTEa LTR MaLR 3 377 -2 4 610 213 132 0 0 chr1 3355769 3355807 -193839625 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 4 610 206 32 0 31 chr1 3357599 3357631 -193837801 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 610 349 246 5 5 chr1 3357705 3357817 -193837615 - MIRb SINE MIR -6 270 153 4 610 432 229 0 34 chr1 3358894 3359036 -193836396 - L1MA6 LINE L1 -89 6211 6078 4 610 290 399 98 0 chr1 3362372 3362505 -193832927 + B1F2 SINE Alu 1 146 -3 4 610 1968 304 124 22 chr1 3363284 3364806 -193830626 - Lx8 LINE L1 -437 7036 5388 4 610 401 317 78 14 chr1 3364833 3364974 -193830458 + MTD LTR MaLR 18 167 -252 4 610 2561 305 64 25 chr1 3364974 3366636 -193828796 - Lx8 LINE L1 -2914 2933 1207 4 610 246 105 0 0 chr1 3367869 3367907 -193827525 + (A)n Simple_repeat Simple_repeat 1 38 0 4 610 271 0 25 25 chr1 3367966 3368006 -193827426 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 610 626 95 11 0 chr1 3368211 3368306 -193827126 + (TCC)n Simple_repeat Simple_repeat 2 97 0 4 610 215 246 35 17 chr1 3368306 3368364 -193827068 - B1F SINE Alu -90 59 1 4 610 276 258 49 142 chr1 3368496 3368722 -193826710 + Charlie1 DNA MER1_type 2567 2771 -10 4 610 988 281 56 19 chr1 3370812 3371135 -193824297 + MER2 DNA MER2_type 11 345 0 4 610 326 210 235 0 chr1 3373294 3373375 -193822057 + MLT1A0 LTR MaLR 181 280 -85 4 610 3163 81 2 35 chr1 3373518 3373979 -193821453 - L1_Mus1 LINE L1 -1 6566 6121 4 610 1406 42 0 0 chr1 3373979 3374145 -193821287 + L1_Mus1 LINE L1 6016 6181 -386 4 610 1164 41 0 14 chr1 3375130 3375278 -193820154 + B1_Mus2 SINE Alu 2 147 0 4 610 311 138 0 17 chr1 3375586 3375645 -193819787 + Lx7 LINE L1 7639 7696 0 4 610 222 171 0 0 chr1 3377000 3377041 -193818391 + CT-rich Low_complexity Low_complexity 2 42 0 4 610 244 217 16 32 chr1 3379025 3379087 -193816345 + MER49 LTR ERV1 494 554 -369 4 610 738 263 248 16 chr1 3379127 3379506 -193815926 - MLT1C LTR MaLR 0 467 1 4 610 411 205 0 0 chr1 3379865 3379948 -193815484 + MLT1A0 LTR MaLR 271 353 -12 4 610 498 278 0 34 chr1 3380145 3380264 -193815168 + B4A SINE B4 178 292 0 4 610 234 0 0 0 chr1 3380271 3380297 -193815135 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 610 630 60 0 0 chr1 3380297 3380379 -193815053 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 610 4014 35 6 10 chr1 3380442 3380929 -193814503 - L1Md_F3 LINE L1 0 6584 6100 4 610 465 354 12 35 chr1 3381301 3381471 -193813961 - MER44D DNA MER2_type -531 174 9 4 610 337 344 79 35 chr1 3381900 3382129 -193813303 - L1M4b LINE L1 -6502 832 594 4 610 243 281 20 86 chr1 3383019 3383046 -193812386 + B1F1 SINE Alu 5 64 -53 4 610 313 219 13 27 chr1 3383046 3383121 -193812311 + ID_B1 SINE B4 111 184 -40 4 610 243 281 20 86 chr1 3383121 3383142 -193812290 + B1F1 SINE Alu 65 117 0 4 610 377 243 127 45 chr1 3384399 3384619 -193810813 + L1MA5 LINE L1 5877 6114 -186 4 610 629 329 30 16 chr1 3384816 3385119 -193810313 + Lx9 LINE L1 7142 7448 -196 4 610 291 248 136 9 chr1 3385130 3385240 -193810192 + L1MA5 LINE L1 6173 6296 -4 4 610 184 328 90 25 chr1 3386005 3386127 -193809305 + MIRc SINE MIR 43 172 -96 4 610 204 185 0 0 chr1 3387576 3387630 -193807802 + GA-rich Low_complexity Low_complexity 2 55 0 4 610 535 291 88 24 chr1 3387880 3388308 -193807124 + L1M2 LINE L1 5111 5570 -730 4 610 23 0 0 0 chr1 3389386 3389409 -193806023 + AT_rich Low_complexity Low_complexity 1 23 0 4 610 1189 214 55 16 chr1 3391630 3391886 -193803546 + Lx9 LINE L1 7044 7309 -335 4 610 534 54 0 0 chr1 3391886 3391960 -193803472 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 610 3779 74 0 4 chr1 3392040 3392542 -193802890 + L1Md_F2 LINE L1 5087 5586 -297 4 610 7142 74 26 4 chr1 3392542 3393504 -193801928 + L1Md_F2 LINE L1 5587 6569 -13 4 610 674 215 15 5 chr1 3393506 3393707 -193801725 + Lx9 LINE L1 7435 7637 -7 4 610 677 299 60 97 chr1 3393709 3394652 -193800780 - L1MB3 LINE L1 -1 6182 5274 4 610 193 329 43 0 chr1 3395169 3395239 -193800193 + L2b LINE L2 3288 3360 -15 4 610 570 91 30 0 chr1 3396509 3396608 -193798824 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 610 233 267 77 39 chr1 3397995 3398073 -193797359 + ID4 SINE ID 1 81 -2 4 610 745 197 0 22 chr1 3398460 3398642 -193796790 + GA-rich Low_complexity Low_complexity 3 180 0 4 610 396 0 0 0 chr1 3398782 3398826 -193796606 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 610 247 327 219 24 chr1 3398960 3399371 -193796061 - L2 LINE L2 -358 3061 2571 4 610 368 285 57 110 chr1 3399413 3399622 -193795810 + L1M5 LINE L1 5464 5661 -503 4 610 219 69 0 0 chr1 3399849 3399878 -193795554 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 4 610 276 233 0 0 chr1 3400342 3400415 -193795017 + GA-rich Low_complexity Low_complexity 2 74 0 4 610 300 53 0 0 chr1 3401508 3401546 -193793886 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 610 741 103 16 8 chr1 3402716 3402843 -193792589 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 4 610 189 121 0 0 chr1 3402852 3402885 -193792547 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 4 610 405 0 0 0 chr1 3403056 3403101 -193792331 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 610 579 29 0 0 chr1 3403102 3403171 -193792261 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 610 405 0 0 0 chr1 3403223 3403268 -193792164 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 610 581 256 158 0 chr1 3403896 3404060 -193791372 - ID_B1 SINE B4 -34 190 1 4 610 404 226 108 0 chr1 3405148 3405250 -193790182 - MER2 DNA MER2_type -120 225 113 4 610 1221 110 15 0 chr1 3405728 3405943 -193789489 + L1_Mus4 LINE L1 6352 6566 0 4 610 209 91 45 0 chr1 3405961 3406005 -193789427 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 610 236 347 0 39 chr1 3406099 3406201 -193789231 + MER5A1 DNA MER1_type 69 166 0 4 610 278 281 50 40 chr1 3406218 3406318 -193789114 - MIRb SINE MIR -45 223 123 4 610 893 128 7 0 chr1 3407262 3407410 -193788022 + (GGGA)n Simple_repeat Simple_repeat 2 150 0 4 611 212 188 16 0 chr1 3408533 3408597 -193786835 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 611 307 244 64 0 chr1 3409007 3409085 -193786347 - B1F SINE Alu 0 149 67 4 611 373 287 21 0 chr1 3409019 3409113 -193786319 - ID_B1 SINE B4 -12 212 117 4 611 26 30 0 0 chr1 3409361 3409394 -193786038 + AT_rich Low_complexity Low_complexity 1 33 0 4 611 521 264 12 47 chr1 3409550 3409721 -193785711 + Lx7 LINE L1 7137 7301 -395 4 611 4300 47 2 8 chr1 3409750 3410286 -193785146 - L1Md_F2 LINE L1 0 6582 6050 4 611 501 275 63 28 chr1 3410720 3410862 -193784570 + ID_B1 SINE B4 78 224 0 4 611 771 302 58 40 chr1 3412618 3412842 -193782590 - B4A SINE B4 -57 235 8 4 611 485 135 0 11 chr1 3413014 3413104 -193782328 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 4 611 6907 92 47 2 chr1 3413187 3414176 -193781256 + RLTR13D4 LTR ERVK 1 1033 0 4 611 232 365 71 33 chr1 3415765 3415949 -193779483 - L2 LINE L2 -534 2885 2695 4 611 267 235 33 16 chr1 3416671 3416792 -193778640 + (TTAAA)n Simple_repeat Simple_repeat 1 123 0 4 611 21 0 0 0 chr1 3416792 3416813 -193778619 + AT_rich Low_complexity Low_complexity 1 21 0 4 611 212 254 32 0 chr1 3417060 3417123 -193778309 + T-rich Low_complexity Low_complexity 6 70 0 4 611 457 328 148 19 chr1 3417256 3417520 -193777912 - MER2 DNA MER2_type -12 333 36 4 611 224 323 16 0 chr1 3418468 3418530 -193776902 + FLAM_A SINE Alu 12 74 -221 4 611 203 245 0 0 chr1 3418664 3418713 -193776719 + CT-rich Low_complexity Low_complexity 2 50 0 4 611 24 67 0 0 chr1 3419093 3419138 -193776294 + AT_rich Low_complexity Low_complexity 1 45 0 4 611 21 71 0 0 chr1 3419913 3419955 -193775477 + AT_rich Low_complexity Low_complexity 1 42 0 4 611 2821 178 35 40 chr1 3420238 3420816 -193774616 + RMER15 LTR ERVL 1 575 0 4 611 233 352 164 0 chr1 3421008 3421167 -193774265 - L2 LINE L2 -857 2562 2378 4 611 313 242 48 19 chr1 3421324 3421427 -193774005 + MTC LTR MaLR 5 117 -262 4 611 1069 95 0 0 chr1 3422058 3422205 -193773227 - B1_Mus1 SINE Alu 0 148 2 4 611 21 0 0 0 chr1 3422810 3422831 -193772601 + AT_rich Low_complexity Low_complexity 1 21 0 4 611 26 50 0 0 chr1 3422907 3422947 -193772485 + AT_rich Low_complexity Low_complexity 1 40 0 4 611 186 43 0 0 chr1 3424641 3424664 -193770768 + (CAA)n Simple_repeat Simple_repeat 3 25 0 4 611 21 0 0 0 chr1 3426372 3426393 -193769039 + AT_rich Low_complexity Low_complexity 1 21 0 4 611 329 230 18 91 chr1 3426495 3426605 -193768827 - MLT1A1 LTR MaLR -5 403 302 4 611 312 212 138 0 chr1 3426617 3426697 -193768735 + URR1B DNA MER1_type 135 225 0 4 611 1011 291 144 25 chr1 3427695 3428048 -193767384 + MTC LTR MaLR 27 421 0 4 611 556 276 15 144 chr1 3428150 3428345 -193767087 + B3A SINE B2 1 170 -28 4 611 2059 116 13 0 chr1 3429284 3429587 -193765845 - Lx LINE L1 -326 6328 6022 5 611 1954 117 18 34 chr1 3429589 3429917 -193765515 + Lx LINE L1 6330 6652 -2 5 611 386 84 0 27 chr1 3430113 3430186 -193765246 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 5 611 549 44 0 0 chr1 3430191 3430259 -193765173 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 611 281 26 0 26 chr1 3430752 3430791 -193764641 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 611 476 350 75 36 chr1 3430874 3431182 -193764250 - MER2 DNA MER2_type 0 345 26 5 611 25 0 0 0 chr1 3431449 3431474 -193763958 + AT_rich Low_complexity Low_complexity 1 25 0 5 611 194 315 41 35 chr1 3432105 3432229 -193763203 + L2c LINE L2 3238 3360 -15 5 611 555 229 35 14 chr1 3432683 3432825 -193762607 - B1F SINE Alu -1 148 4 5 611 183 80 0 0 chr1 3434548 3434573 -193760859 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 5 611 685 134 42 0 chr1 3435221 3435340 -193760092 + RMER16-int LTR ERVK 4215 4338 -1068 5 611 669 289 12 16 chr1 3435335 3435581 -193759851 + RLTR6-int LTR ERV1 7387 7631 -147 5 611 261 0 0 0 chr1 3435583 3435612 -193759820 + (T)n Simple_repeat Simple_repeat 1 29 0 5 611 1002 80 73 0 chr1 3435612 3435749 -193759683 - B1_Mm SINE Alu 0 147 1 5 611 2775 76 41 94 chr1 3435879 3436388 -193759044 + RLTR45 LTR ERVK 1 482 0 5 611 624 287 166 60 chr1 3436660 3436979 -193758453 + RLTR9A LTR ERVK 16 368 0 5 611 411 203 183 10 chr1 3438172 3438330 -193757102 - B3A SINE B2 -1 215 14 5 611 414 196 42 89 chr1 3439076 3439244 -193756188 + Lx9 LINE L1 7446 7605 -39 5 611 30 77 0 0 chr1 3439269 3439334 -193756098 + AT_rich Low_complexity Low_complexity 1 65 0 5 611 357 250 167 0 chr1 3439859 3439979 -193755453 + RMER15 LTR ERVL 422 561 -14 5 611 345 274 53 57 chr1 3440156 3440292 -193755140 + MLT1A1 LTR MaLR 237 408 0 5 611 438 256 87 29 chr1 3442109 3442350 -193753082 - L1MD LINE L1 -962 5184 4930 5 611 864 299 106 8 chr1 3442516 3442582 -193752850 - B4A SINE B4 0 292 215 5 611 686 52 8 25 chr1 3442582 3442701 -193752731 + (TTTTG)n Simple_repeat Simple_repeat 1 117 0 5 611 864 299 106 8 chr1 3442701 3442890 -193752542 - B4A SINE B4 -78 214 12 5 611 1285 118 16 0 chr1 3442960 3443147 -193752285 + B2_Mm2 SINE B2 2 191 -4 5 611 287 211 0 0 chr1 3445202 3445254 -193750178 - MLT1A1 LTR MaLR -12 396 345 5 611 226 321 45 78 chr1 3445649 3445828 -193749604 + L2 LINE L2 1104 1276 -2143 5 611 1310 259 62 39 chr1 3446092 3446449 -193748983 + ORR1D2 LTR MaLR 6 370 0 5 611 239 295 80 0 chr1 3447041 3447153 -193748279 + L1MC4a LINE L1 7489 7609 -273 5 611 26 30 0 0 chr1 3447767 3447800 -193747632 + AT_rich Low_complexity Low_complexity 1 33 0 5 611 299 234 51 21 chr1 3449015 3449126 -193746306 - MIR SINE MIR -101 167 54 5 611 981 128 0 0 chr1 3449143 3449284 -193746148 - B1_Mus2 SINE Alu -6 141 1 5 611 504 0 0 0 chr1 3449297 3449353 -193746079 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 5 611 548 164 0 19 chr1 3449353 3449451 -193745981 - Lx3A LINE L1 -13 6968 6871 5 611 943 82 13 20 chr1 3449451 3449594 -193745838 - Lx3A LINE L1 -566 6415 6273 5 611 4445 113 23 7 chr1 3449585 3450655 -193744777 + Lx3_Mus LINE L1 5181 6270 -739 5 611 516 59 0 0 chr1 3450747 3450815 -193744617 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 611 817 219 30 12 chr1 3450822 3450988 -193744444 - B3A SINE B2 -25 173 5 5 611 418 354 123 22 chr1 3451397 3451813 -193743619 + MLT1J LTR MaLR 25 482 -30 5 611 450 219 0 0 chr1 3452695 3452777 -193742655 + B3A SINE B2 1 82 -116 5 611 460 298 168 44 chr1 3452777 3453020 -193742412 + L1MD LINE L1 2928 3203 -2943 5 611 216 0 0 0 chr1 3453020 3453044 -193742388 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 611 460 298 168 44 chr1 3453044 3453116 -193742316 + L1MD LINE L1 3204 3281 -2865 5 611 1367 310 47 23 chr1 3453152 3453750 -193741682 + Lx8 LINE L1 6859 7470 -3 5 611 234 275 101 0 chr1 3453763 3453912 -193741520 + L1MD LINE L1 3323 3486 -2660 5 611 417 195 3 50 chr1 3453924 3454076 -193741356 - L1M3 LINE L1 -1154 4726 4609 5 611 609 293 106 8 chr1 3454072 3454468 -193740964 + L1MD LINE L1 3512 3946 -2200 5 611 287 287 143 59 chr1 3454597 3454953 -193740479 + L1MD LINE L1 4202 4587 -1559 5 611 343 310 51 46 chr1 3454972 3455168 -193740264 + L1MD LINE L1 4987 5183 -963 5 611 448 309 31 23 chr1 3455189 3455318 -193740114 + RSINE1 SINE B4 7 136 -29 5 611 26 64 0 0 chr1 3455322 3455369 -193740063 + AT_rich Low_complexity Low_complexity 1 47 0 5 611 230 277 145 0 chr1 3455380 3455539 -193739893 + L1MD LINE L1 5254 5435 -807 5 611 260 222 24 12 chr1 3455535 3455617 -193739815 + L1MD LINE L1 5802 5884 -358 5 611 1022 264 30 19 chr1 3455726 3455996 -193739436 - B4A SINE B4 -18 274 2 5 611 847 323 57 34 chr1 3457550 3457854 -193737578 + MTE2a LTR MaLR 45 419 0 5 611 192 77 0 0 chr1 3458152 3458178 -193737254 + (A)n Simple_repeat Simple_repeat 1 26 0 5 611 4465 64 17 0 chr1 3458509 3459084 -193736348 - L1_Mus1 LINE L1 0 6567 5983 5 611 3072 39 0 0 chr1 3459084 3459543 -193735889 + L1_Mus1 LINE L1 5503 5961 -606 5 611 645 326 64 68 chr1 3459646 3459972 -193735460 + MLT1F LTR MaLR 192 516 -32 5 611 371 293 92 54 chr1 3460556 3460889 -193734543 + Zaphod DNA Tip100 3625 3970 -61 5 611 350 344 13 50 chr1 3460889 3461048 -193734384 + B3A SINE B2 1 153 -45 5 611 222 118 0 0 chr1 3461051 3461085 -193734347 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 611 3405 39 0 126 chr1 3462034 3462533 -193732899 + RLTR10C LTR ERVK 1 436 0 5 611 3914 78 2 21 chr1 3462737 3463271 -193732161 + L1_Mus1 LINE L1 6043 6566 -1 5 611 22 0 0 0 chr1 3463532 3463554 -193731878 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 256 273 56 83 chr1 3463693 3463801 -193731631 + MER77 LTR ERVL 72 176 -431 5 611 480 386 56 42 chr1 3463965 3464249 -193731183 - MER77 LTR ERVL -8 599 312 5 611 217 282 39 0 chr1 3465151 3465229 -193730203 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 611 923 299 27 34 chr1 3465257 3465551 -193729881 - B4A SINE B4 0 292 1 5 611 192 40 0 0 chr1 3465847 3465872 -193729560 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 611 428 309 30 13 chr1 3465948 3466100 -193729332 + MLT1B LTR MaLR 54 208 -259 5 611 3109 175 18 28 chr1 3466100 3466710 -193728722 + Lx4B LINE L1 6436 7039 -19 5 611 309 349 133 53 chr1 3466710 3466932 -193728500 + MLT1B LTR MaLR 209 458 -9 5 611 984 233 0 10 chr1 3468371 3468579 -193726853 - B3 SINE B2 -10 206 1 5 611 227 312 73 40 chr1 3468730 3468880 -193726552 + MER89 LTR ERV1 84 238 -321 5 611 194 91 30 0 chr1 3468929 3468962 -193726470 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 611 977 263 82 66 chr1 3468998 3469608 -193725824 - L1M2 LINE L1 -915 5228 4609 5 611 229 149 75 0 chr1 3469630 3469697 -193725735 - Lx9 LINE L1 -2 7642 7571 5 611 257 204 11 21 chr1 3469809 3469904 -193725528 + L1M2 LINE L1 3065 3158 -2985 5 611 627 286 138 8 chr1 3469908 3470292 -193725140 + L1_Mur3 LINE L1 3463 3896 -1984 5 611 3006 244 58 3 chr1 3470381 3471161 -193724271 + Lx7 LINE L1 6405 7227 -469 5 611 302 240 115 13 chr1 3471323 3471479 -193723953 + Lx7 LINE L1 7506 7677 -19 5 611 567 286 47 5 chr1 3471894 3472087 -193723345 - MER2 DNA MER2_type -59 286 86 5 611 415 319 9 0 chr1 3472480 3472596 -193722836 + PB1 SINE Alu 11 127 0 5 611 315 177 0 0 chr1 3472598 3472660 -193722772 + GA-rich Low_complexity Low_complexity 2 63 0 5 611 879 255 89 72 chr1 3472810 3473157 -193722275 + RLTR28B LTR ERVL 126 478 -3 5 611 229 279 14 14 chr1 3473509 3473578 -193721854 + B4A SINE B4 129 197 -95 5 611 261 0 0 0 chr1 3473660 3473689 -193721743 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 611 745 321 16 5 chr1 3476291 3476476 -193718956 + B3 SINE B2 3 189 -27 5 611 194 0 39 0 chr1 3476482 3476508 -193718924 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5 611 279 191 0 0 chr1 3477236 3477299 -193718133 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 5 611 1081 173 9 65 chr1 3477745 3477974 -193717458 - URR1B DNA MER1_type -5 220 5 5 611 270 0 0 0 chr1 3478039 3478069 -193717363 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 611 297 0 0 0 chr1 3478069 3478101 -193717331 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 611 427 311 125 62 chr1 3478507 3478812 -193716620 - MLT1A LTR MaLR -21 353 30 5 611 1196 96 6 0 chr1 3478885 3479062 -193716370 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 611 619 142 0 69 chr1 3479177 3479321 -193716111 + Lx2A1 LINE L1 6875 7008 0 5 611 493 45 0 0 chr1 3479330 3479396 -193716036 + Lx3B LINE L1 6354 6419 -554 5 611 22 35 0 0 chr1 3479631 3479660 -193715772 + AT_rich Low_complexity Low_complexity 1 29 0 5 611 231 114 0 0 chr1 3479939 3479974 -193715458 + (GGA)n Simple_repeat Simple_repeat 3 37 0 5 611 3405 143 18 81 chr1 3480221 3480877 -193714555 - Lx3B LINE L1 -3 6970 6356 5 611 2910 137 6 19 chr1 3480894 3481371 -193714061 - Lx2A1 LINE L1 -2 7006 6536 5 611 1340 142 8 31 chr1 3481377 3481631 -193713801 - Lx3B LINE L1 -620 6353 6106 5 611 321 47 0 0 chr1 3481967 3482010 -193713422 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 611 869 233 31 5 chr1 3482012 3482206 -193713226 - B3 SINE B2 -16 200 2 5 611 252 59 0 0 chr1 3485002 3485036 -193710396 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 5 611 430 323 71 24 chr1 3485147 3485315 -193710117 + MTD LTR MaLR 3 178 -241 5 611 184 100 24 24 chr1 3486540 3486581 -193708851 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 5 611 270 0 0 0 chr1 3486683 3486713 -193708719 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 611 17260 15 0 0 chr1 3489579 3492380 -193703052 - L1Md_T LINE L1 0 6582 3782 5 611 520 267 16 8 chr1 3492402 3492523 -193702909 - B1F SINE Alu -6 143 22 5 611 188 269 114 13 chr1 3492912 3492991 -193702441 - L3 LINE CR1 -872 3617 3531 5 611 706 258 122 95 chr1 3493165 3493534 -193701898 + MTEa LTR MaLR 1 379 0 6 611 255 103 0 0 chr1 3493962 3494001 -193701431 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 611 1163 41 0 33 chr1 3494032 3494183 -193701249 + B1_Mus2 SINE Alu 2 147 0 6 611 22 35 0 0 chr1 3494266 3494295 -193701137 + AT_rich Low_complexity Low_complexity 1 29 0 6 611 733 101 21 41 chr1 3496119 3496264 -193699168 + Lx2 LINE L1 6855 6996 -1 6 611 243 314 84 69 chr1 3496476 3496678 -193698754 + MamGypLTR1c LTR Gypsy 584 788 -15 6 611 1023 100 0 0 chr1 3496862 3497012 -193698420 + (GGA)n Simple_repeat Simple_repeat 2 151 0 6 611 210 152 16 33 chr1 3497056 3497117 -193698315 + GA-rich Low_complexity Low_complexity 1 60 0 6 611 2299 137 11 3 chr1 3497247 3497613 -193697819 + Lx3A LINE L1 6612 6980 -1 6 611 228 67 0 0 chr1 3497633 3497663 -193697769 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 6 611 1938 171 20 68 chr1 3497689 3498129 -193697303 - RMER1B Other Other 0 1066 648 6 611 300 70 0 0 chr1 3498941 3498984 -193696448 + (T)n Simple_repeat Simple_repeat 1 43 0 6 611 242 250 0 0 chr1 3499150 3499198 -193696234 + polypurine Low_complexity Low_complexity 3 50 0 6 611 432 0 0 0 chr1 3499323 3499371 -193696061 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 611 1562 37 0 0 chr1 3499809 3500000 -193695432 + L1Md_F2 LINE L1 6080 6270 -312 6 611 1948 91 20 26 chr1 3500000 3500306 -193695126 + L1_Mus1 LINE L1 6264 6567 0 1 611 253 26 0 0 chr1 3502177 3502216 -193693216 + Lx LINE L1 6609 6647 -7 2 611 832 259 34 5 chr1 3504893 3505099 -193690333 + MTE2b LTR MaLR 1 212 -167 3 611 372 242 96 60 chr1 3505197 3505364 -193690068 + MTE2b LTR MaLR 207 379 0 3 611 666 257 0 14 chr1 3506769 3506907 -193688525 - B3A SINE B2 -62 136 1 4 611 23 33 0 0 chr1 3508897 3508927 -193686505 + AT_rich Low_complexity Low_complexity 1 30 0 5 611 369 0 0 0 chr1 3509076 3509117 -193686315 + (TTA)n Simple_repeat Simple_repeat 1 41 0 6 611 8594 99 5 3 chr1 3509118 3511180 -193684252 - L1_Mus1 LINE L1 0 6567 4505 7 611 4371 111 18 34 chr1 3511179 3511943 -193683489 - L1_Mus1 LINE L1 -2237 3646 2895 7 611 56 29 0 0 chr1 3512563 3512633 -193682799 + AT_rich Low_complexity Low_complexity 1 70 0 8 611 288 53 0 0 chr1 3513144 3513182 -193682250 + (TAA)n Simple_repeat Simple_repeat 1 38 0 9 611 290 301 56 42 chr1 3513970 3514112 -193681320 + Charlie9 DNA MER1_type 7 150 -2607 1 611 315 264 68 47 chr1 3514656 3514847 -193680585 + L1MA4A LINE L1 5736 5930 -373 1 611 480 158 0 0 chr1 3514888 3514983 -193680449 + (CA)n Simple_repeat Simple_repeat 1 95 0 1 611 221 387 9 0 chr1 3515406 3515517 -193679915 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 611 228 130 0 0 chr1 3517441 3517487 -193677945 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1 611 333 309 152 24 chr1 3517711 3518006 -193677426 + L1M5 LINE L1 4763 5095 -1051 1 611 502 290 0 51 chr1 3518630 3518768 -193676664 - B1F SINE Alu -7 142 12 1 611 261 83 0 0 chr1 3519851 3519887 -193675545 + tRNA-Gly-GGA tRNA tRNA 1 36 -39 1 611 423 0 0 0 chr1 3519887 3519934 -193675498 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 611 387 0 0 0 chr1 3520484 3520527 -193674905 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 611 1740 211 6 20 chr1 3520580 3520933 -193674499 - MTC LTR MaLR 0 421 74 2 611 1039 65 0 0 chr1 3520894 3521033 -193674399 + B1_Mus1 SINE Alu 10 148 0 2 611 273 57 0 0 chr1 3521039 3521074 -193674358 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 2 611 466 239 25 8 chr1 3521074 3521192 -193674240 - MTC LTR MaLR -301 120 1 2 611 342 253 0 12 chr1 3523013 3523097 -193672335 + ID4_ SINE ID 1 83 0 2 611 435 245 18 28 chr1 3523320 3523429 -193672003 - B1F1 SINE Alu -4 145 38 2 611 1410 111 0 0 chr1 3525987 3526194 -193669238 - L1_Mus2 LINE L1 0 6566 6360 2 611 5882 102 17 23 chr1 3526228 3527917 -193667515 + L1VL1 LINE L1 193 1866 -1832 2 611 180 0 0 0 chr1 3527974 3527994 -193667438 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 611 399 21 0 0 chr1 3529137 3529185 -193666247 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 611 219 36 0 0 chr1 3529185 3529212 -193666220 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 611 747 281 62 23 chr1 3529764 3530117 -193665315 - L1M2 LINE L1 -1366 4777 4411 3 611 3478 25 2 0 chr1 3530136 3530531 -193664901 - MTA_Mm LTR MaLR 0 396 1 3 611 2002 169 55 80 chr1 3530581 3531032 -193664400 + RLTR31A_Mm LTR ERVK 1 440 -144 3 611 182 43 40 60 chr1 3531064 3531114 -193664318 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 3 611 848 255 14 18 chr1 3531130 3531410 -193664022 - L1_Rod LINE L1 -1550 4297 4019 3 611 376 329 114 70 chr1 3532315 3532613 -193662819 - ORR1E LTR MaLR -46 313 3 3 611 315 273 26 0 chr1 3533359 3533436 -193661996 - MER5B DNA MER1_type 0 178 100 3 611 414 172 46 0 chr1 3533616 3533703 -193661729 + MTC-int LTR MaLR 10 100 -1158 3 611 1839 251 5 31 chr1 3533913 3534336 -193661096 + MTD LTR MaLR 8 419 0 3 611 3310 230 151 22 chr1 3534336 3535451 -193659981 + MTD-int LTR MaLR 1 1258 0 3 611 1474 221 124 19 chr1 3535451 3535830 -193659602 + MTD LTR MaLR 1 419 0 3 611 670 296 108 0 chr1 3536750 3536936 -193658496 - B3 SINE B2 -5 211 6 3 611 444 339 49 22 chr1 3538673 3538899 -193656533 + MIRb SINE MIR 34 265 -3 4 612 2395 223 108 70 chr1 3539317 3540186 -193655246 - RLTR13D6 LTR ERVK 0 902 1 4 612 21 0 0 0 chr1 3540899 3540920 -193654512 + AT_rich Low_complexity Low_complexity 1 21 0 4 612 400 235 16 108 chr1 3541057 3541186 -193654246 - PB1D10 SINE Alu 0 117 1 4 612 1565 264 41 135 chr1 3542419 3543274 -193652158 + MTD-int LTR MaLR 563 1258 0 4 612 1371 220 63 0 chr1 3543274 3543542 -193651890 + MTD LTR MaLR 1 285 -134 4 612 279 345 52 12 chr1 3543939 3544191 -193651241 + MURVY-int LTR ERV1 4029 4290 -3162 4 612 181 149 14 56 chr1 3544707 3544778 -193650654 + GA-rich Low_complexity Low_complexity 3 70 0 4 612 390 349 46 7 chr1 3544914 3545067 -193650365 - RSINE1 SINE B4 -2 163 5 4 612 782 278 209 8 chr1 3545491 3545624 -193649808 + MTE2b LTR MaLR 1 158 -221 4 612 459 0 0 0 chr1 3545624 3545675 -193649757 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 612 782 278 209 8 chr1 3545675 3545809 -193649623 + MTE2b LTR MaLR 159 321 -58 4 612 345 133 0 0 chr1 3545834 3545909 -193649523 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 612 280 242 65 0 chr1 3545909 3545971 -193649461 + MTE2b LTR MaLR 313 378 -1 4 612 935 286 30 47 chr1 3545973 3546274 -193649158 + MTE2b-int LTR MaLR 3 298 -1282 4 612 2821 26 26 0 chr1 3546274 3546616 -193648816 + L1Md_F3 LINE L1 6234 6584 0 5 612 6399 113 6 15 chr1 3546641 3546825 -193648607 + L1_Mus2 LINE L1 4867 5052 -831 5 612 1851 126 79 17 chr1 3546825 3547116 -193648316 - RLTR27 LTR ERVK 0 309 1 5 612 7124 90 3 5 chr1 3547116 3548627 -193646805 + L1_Mus2 LINE L1 5053 6555 -11 5 612 240 59 0 0 chr1 3548627 3548661 -193646771 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 612 2190 322 149 38 chr1 3548661 3549261 -193646171 + MTE2b-int LTR MaLR 288 906 -674 4 612 333 0 0 0 chr1 3549261 3549298 -193646134 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 612 447 35 0 0 chr1 3549298 3549354 -193646078 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 612 2190 322 149 38 chr1 3549354 3549907 -193645525 + MTE2b-int LTR MaLR 907 1568 -12 4 612 655 267 73 5 chr1 3549920 3550112 -193645320 + MTE2b LTR MaLR 3 207 -172 4 612 4526 226 37 50 chr1 3550256 3550995 -193644437 + L1_Mur3 LINE L1 54 792 -6936 5 612 210 37 0 0 chr1 3550995 3551022 -193644410 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 612 10494 195 45 31 chr1 3551022 3552143 -193643289 + L1_Mur3 LINE L1 793 1922 -3958 5 612 462 49 0 0 chr1 3552143 3552204 -193643228 + (CATA)n Simple_repeat Simple_repeat 1 61 0 5 612 10494 177 49 19 chr1 3552204 3552318 -193643114 + L1_Mur3 LINE L1 1923 2088 -3792 5 612 285 75 0 0 chr1 3552318 3552358 -193643074 + (CAA)n Simple_repeat Simple_repeat 3 42 0 6 612 10494 177 49 19 chr1 3552358 3552547 -193642885 + L1_Mur3 LINE L1 2089 2268 -3612 5 612 3754 78 6 0 chr1 3552547 3553036 -193642396 + L1_Mus2 LINE L1 6073 6564 -2 6 612 10494 177 49 19 chr1 3553036 3554495 -193640937 + L1_Mur3 LINE L1 2269 3738 -2142 5 612 5313 131 31 2 chr1 3554482 3555405 -193640027 + L1_Mur3 LINE L1 4918 5867 -10 5 612 4655 162 22 30 chr1 3555423 3556270 -193639162 + Lx4A LINE L1 6216 7056 -2 6 612 3254 172 38 12 chr1 3556272 3556949 -193638483 + Lx7 LINE L1 3705 4399 -1481 6 612 3519 85 156 20 chr1 3556950 3557599 -193637833 + RMER17A LTR ERVK 1 737 -14 6 612 3058 188 59 3 chr1 3557644 3558339 -193637093 + Lx7 LINE L1 4394 5127 -753 6 612 1505 261 17 42 chr1 3558326 3558801 -193636631 + Lx7 LINE L1 5815 6277 -1419 6 612 1511 210 268 72 chr1 3558801 3559289 -193636143 + MT2B LTR ERVL 1 601 0 6 612 4921 230 61 59 chr1 3559293 3559560 -193635872 + Lx7 LINE L1 6277 6529 -1167 6 612 2664 83 54 15 chr1 3559560 3559965 -193635467 + BGLII LTR ERVK 1 421 0 6 612 4921 230 61 59 chr1 3559965 3560956 -193634476 + Lx7 LINE L1 6530 7548 -148 6 612 414 30 60 0 chr1 3560956 3561023 -193634409 + (CATAT)n Simple_repeat Simple_repeat 3 73 0 6 612 4921 230 61 59 chr1 3561023 3561180 -193634252 + Lx7 LINE L1 7549 7694 -2 6 612 534 31 0 0 chr1 3561412 3561476 -193633956 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 612 574 259 7 13 chr1 3562512 3562661 -193632771 - B1_Mur2 SINE Alu -1 148 1 6 612 180 0 0 0 chr1 3563061 3563081 -193632351 + (A)n Simple_repeat Simple_repeat 1 20 0 7 612 4070 76 33 12 chr1 3563183 3563756 -193631676 + L1Md_F2 LINE L1 5998 6582 0 7 612 920 128 34 0 chr1 3564354 3564502 -193630930 + L1Md_F2 LINE L1 6368 6520 -62 7 612 432 37 0 0 chr1 3564511 3564565 -193630867 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 612 659 161 6 0 chr1 3564567 3564728 -193630704 + CT-rich Low_complexity Low_complexity 2 163 0 7 612 231 36 0 0 chr1 3564728 3564756 -193630676 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 612 303 233 0 0 chr1 3564773 3564902 -193630530 + CT-rich Low_complexity Low_complexity 1 129 0 7 612 210 288 0 0 chr1 3564902 3564961 -193630471 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 612 2082 261 42 1 chr1 3565496 3565741 -193629691 + Lx5 LINE L1 6455 6879 -581 7 612 435 38 0 0 chr1 3565741 3565794 -193629638 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 612 2082 282 30 4 chr1 3565794 3566150 -193629282 + Lx5 LINE L1 6651 7008 -42 7 612 707 167 7 0 chr1 3566153 3566291 -193629141 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 8 612 808 295 140 38 chr1 3566332 3566610 -193628822 + L1MC LINE L1 2493 2778 -3368 8 612 899 118 0 7 chr1 3566610 3566755 -193628677 + (GGAGAA)n Simple_repeat Simple_repeat 6 149 0 8 612 808 286 142 30 chr1 3566755 3567366 -193628066 + L1MC LINE L1 2779 3465 -2681 8 612 457 291 153 20 chr1 3567453 3567960 -193627472 + L1MC LINE L1 4270 4830 -1316 8 612 638 249 142 42 chr1 3568082 3568321 -193627111 + MER2 DNA MER2_type 82 344 -1 8 612 247 157 0 0 chr1 3568387 3568438 -193626994 + L1MD3 LINE L1 6944 6994 -888 8 612 739 299 178 15 chr1 3568909 3569494 -193625938 + L1MD3 LINE L1 7153 7832 -163 8 612 24 53 0 0 chr1 3569541 3569579 -193625853 + AT_rich Low_complexity Low_complexity 1 38 0 8 612 234 300 14 0 chr1 3570174 3570244 -193625188 + GA-rich Low_complexity Low_complexity 2 72 0 8 612 210 71 0 0 chr1 3571334 3571362 -193624070 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 612 695 261 96 0 chr1 3573117 3573274 -193622158 + B3A SINE B2 1 172 -26 8 612 570 15 0 0 chr1 3573277 3573344 -193622088 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 612 385 240 0 0 chr1 3573378 3573453 -193621979 + ID_B1 SINE B4 150 224 0 9 612 286 325 26 26 chr1 3573896 3574013 -193621419 + Lx9 LINE L1 7126 7242 -402 9 612 1655 260 58 43 chr1 3574030 3575008 -193620424 - RMER17B LTR ERVK -57 901 1 9 612 452 333 18 12 chr1 3575008 3575175 -193620257 + Lx8 LINE L1 7109 7276 -197 9 612 456 67 0 0 chr1 3575185 3575245 -193620187 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 612 26 30 0 0 chr1 3575373 3575406 -193620026 + AT_rich Low_complexity Low_complexity 1 33 0 9 612 492 18 0 0 chr1 3575790 3575847 -193619585 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 612 705 257 54 9 chr1 3578174 3578435 -193616997 - L1MA4A LINE L1 -348 5964 5696 9 612 360 0 0 0 chr1 3578491 3578531 -193616901 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 612 1859 236 164 43 chr1 3579056 3579251 -193616181 + Lx6 LINE L1 6696 6881 -579 9 612 1077 96 0 0 chr1 3579251 3579407 -193616025 + (GA)n Simple_repeat Simple_repeat 1 156 0 1 612 1859 236 164 43 chr1 3579407 3579743 -193615689 + Lx6 LINE L1 6882 7290 -170 9 612 268 315 33 0 chr1 3579843 3579935 -193615497 + Lx7 LINE L1 7225 7319 -377 1 612 405 0 0 0 chr1 3579937 3579982 -193615450 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 612 27 49 0 0 chr1 3580136 3580177 -193615255 + AT_rich Low_complexity Low_complexity 1 41 0 1 612 1832 187 85 0 chr1 3580436 3580799 -193614633 - ORR1B1 LTR MaLR 0 394 1 1 612 63 36 0 0 chr1 3581214 3581298 -193614134 + AT_rich Low_complexity Low_complexity 1 84 0 1 612 43 0 0 0 chr1 3581561 3581604 -193613828 + AT_rich Low_complexity Low_complexity 1 43 0 1 612 33 25 0 0 chr1 3582371 3582411 -193613021 + AT_rich Low_complexity Low_complexity 1 40 0 1 612 21 71 0 0 chr1 3582443 3582485 -193612947 + AT_rich Low_complexity Low_complexity 1 42 0 1 612 416 242 22 0 chr1 3582707 3582764 -193612668 + MTD LTR MaLR 51 109 -310 1 612 6249 55 18 2 chr1 3582764 3583589 -193611843 + RLTR13B4 LTR ERVK 1 803 0 1 612 1431 244 0 21 chr1 3583589 3583875 -193611557 + MTD LTR MaLR 138 417 -2 1 612 465 19 0 0 chr1 3584073 3584127 -193611305 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 612 460 352 31 6 chr1 3584127 3584290 -193611142 - MLT1D LTR MaLR -79 426 260 1 612 219 36 0 0 chr1 3584374 3584402 -193611030 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 612 466 250 19 28 chr1 3584402 3584509 -193610923 - PB1D10 SINE Alu -11 106 1 1 612 363 275 0 104 chr1 3584521 3584675 -193610757 - MLT1D LTR MaLR -466 161 24 1 612 281 26 26 0 chr1 3585601 3585639 -193609793 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 612 600 245 0 73 chr1 3585639 3585780 -193609652 - B1_Mur1 SINE Alu -8 141 11 1 612 30 59 0 0 chr1 3585920 3585971 -193609461 + AT_rich Low_complexity Low_complexity 1 51 0 1 612 1239 240 68 8 chr1 3586471 3587054 -193608378 + Lx5 LINE L1 889 1500 -4377 1 612 7176 141 18 5 chr1 3587056 3588219 -193607213 + Lx2 LINE L1 5587 6764 -233 1 612 13372 178 44 34 chr1 3588220 3589616 -193605816 + Lx5 LINE L1 2873 4293 -1584 1 612 387 0 0 0 chr1 3589616 3589659 -193605773 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 612 13372 178 44 34 chr1 3589659 3589815 -193605617 + Lx5 LINE L1 4294 4443 -1434 1 612 1026 88 7 39 chr1 3589815 3589968 -193605464 + B1_Mus1 SINE Alu 1 148 0 1 612 13372 178 44 34 chr1 3589968 3590166 -193605266 + Lx5 LINE L1 4444 4620 -1257 1 612 180 0 0 0 chr1 3590166 3590186 -193605246 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1 612 13372 183 48 30 chr1 3590186 3591673 -193603759 + Lx5 LINE L1 4621 6177 -873 1 612 413 293 80 49 chr1 3591784 3591959 -193603473 - B3 SINE B2 -5 193 6 1 612 1474 143 19 164 chr1 3591983 3592360 -193603072 - ORR1A3 LTR MaLR 0 326 5 1 612 669 329 12 93 chr1 3592491 3592739 -193602693 + B4 SINE B4 1 228 -64 1 612 710 241 24 10 chr1 3592739 3592944 -193602488 - L1_Mur3 LINE L1 -1323 4557 4350 1 612 1412 223 80 12 chr1 3592989 3593316 -193602116 - MTD LTR MaLR 0 419 71 1 612 988 249 0 14 chr1 3594663 3594871 -193600561 - B3 SINE B2 -9 207 3 1 612 399 21 0 0 chr1 3595395 3595443 -193599989 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 612 452 318 109 20 chr1 3595454 3595701 -193599731 - MER44C DNA MER2_type -9 724 456 1 612 679 317 16 11 chr1 3595738 3595926 -193599506 - B4 SINE B4 -13 279 91 1 612 896 292 129 43 chr1 3595988 3596382 -193599050 - MER44C DNA MER2_type -253 480 53 1 612 339 281 41 0 chr1 3597473 3597594 -193597838 - L1MA6 LINE L1 -27 6273 6148 1 612 369 198 116 0 chr1 3597707 3597793 -193597639 - Lx7 LINE L1 -665 7031 6936 1 612 1829 245 100 28 chr1 3597799 3598236 -193597196 + Lx7 LINE L1 7052 7531 -165 1 612 186 43 0 0 chr1 3598236 3598259 -193597173 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 612 1829 245 100 28 chr1 3598259 3598422 -193597010 + Lx7 LINE L1 7532 7695 -1 1 612 419 289 92 17 chr1 3598427 3598776 -193596656 + L1M2 LINE L1 4977 5351 -792 1 612 302 309 183 70 chr1 3599169 3599284 -193596148 - RSINE1 SINE B4 -35 130 3 1 612 396 0 0 0 chr1 3600083 3600127 -193595305 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 612 470 357 13 49 chr1 3600991 3601248 -193594184 + ORR1E LTR MaLR 1 242 -128 1 612 3155 18 2 62 chr1 3602345 3602496 -193592936 - MTA_Mm LTR MaLR 0 396 260 1 612 2719 57 0 14 chr1 3602496 3602854 -193592578 + L1Md_F2 LINE L1 6230 6582 0 1 612 3155 18 2 62 chr1 3602854 3603123 -193592309 - MTA_Mm LTR MaLR -137 259 1 1 612 9172 32 2 2 chr1 3603123 3604221 -193591211 - MTA_Mm-int LTR MaLR 0 1098 1 1 612 3417 25 2 0 chr1 3604221 3604616 -193590816 - MTA_Mm LTR MaLR 0 396 1 1 612 5685 51 15 1 chr1 3604687 3605413 -193590019 + L1Md_F3 LINE L1 5835 6570 -14 1 612 33056 102 11 5 chr1 3606189 3612701 -193582731 - L1Md_F2 LINE L1 0 6582 98 1 612 190 204 114 0 chr1 3614621 3614665 -193580767 - L4 LINE RTE -295 1734 1686 1 612 4306 82 36 5 chr1 3616487 3617096 -193578336 - Lx3_Mus LINE L1 -8 7001 6374 1 612 3585 93 2 2 chr1 3617096 3617621 -193577811 + L1_Mur1 LINE L1 5247 5771 -115 1 612 234 262 77 10 chr1 3618220 3618324 -193577108 + L1M5 LINE L1 5597 5707 -417 1 612 23 33 0 0 chr1 3618642 3618672 -193576760 + AT_rich Low_complexity Low_complexity 1 30 0 1 612 354 45 0 0 chr1 3619179 3619223 -193576209 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 612 1092 92 0 0 chr1 3619225 3619367 -193576065 - B1_Mus2 SINE Alu -4 143 2 1 612 1016 209 102 70 chr1 3619888 3620264 -193575168 + Lx5 LINE L1 6676 7047 -3 1 612 361 322 0 33 chr1 3621171 3621293 -193574139 - PB1D7 SINE Alu 0 120 3 1 612 353 292 60 30 chr1 3621485 3621619 -193573813 + L1ME4a LINE L1 5254 5391 -733 1 612 300 290 65 70 chr1 3621806 3622006 -193573426 + L1ME4a LINE L1 5671 5869 -255 1 612 1340 240 75 38 chr1 3622033 3622432 -193573000 - MTD LTR MaLR -5 414 1 1 612 228 254 16 0 chr1 3622583 3622646 -193572786 + Zaphod DNA Tip100 1961 2024 -2007 1 612 1337 165 152 39 chr1 3628700 3628742 -193566690 + RMER4B LTR ERVK 17 59 -526 1 612 297 0 0 0 chr1 3628742 3628775 -193566657 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 612 1337 173 151 55 chr1 3628775 3629163 -193566269 + RMER4B LTR ERVK 59 465 -1 1 612 387 296 88 58 chr1 3629273 3629499 -193565933 + L1MB8 LINE L1 5945 6177 -1 1 612 222 128 0 0 chr1 3629864 3629903 -193565529 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 612 487 271 30 37 chr1 3630444 3630578 -193564854 + RSINE1 SINE B4 11 143 -22 1 612 490 252 0 20 chr1 3630636 3630786 -193564646 + L1M2 LINE L1 5596 5742 -549 1 612 216 0 0 0 chr1 3631871 3631895 -193563537 + (T)n Simple_repeat Simple_repeat 1 24 0 1 612 978 265 119 52 chr1 3632364 3632802 -193562630 - RMER13A LTR ERVK -393 467 1 1 612 272 328 140 6 chr1 3632947 3633125 -193562307 + MIR SINE MIR 7 208 -54 1 612 22 35 0 0 chr1 3633695 3633724 -193561708 + AT_rich Low_complexity Low_complexity 1 29 0 1 612 236 282 26 43 chr1 3633764 3633879 -193561553 - MER5A1 DNA MER1_type 0 166 54 1 612 1386 197 132 6 chr1 3634544 3634876 -193560556 - ORR1D1 LTR MaLR 0 374 1 1 612 697 206 13 40 chr1 3637098 3637250 -193558182 - B1_Mus1 SINE Alu 0 148 1 1 612 306 98 0 0 chr1 3637338 3637389 -193558043 + (T)n Simple_repeat Simple_repeat 1 51 0 1 612 213 39 0 0 chr1 3638362 3638388 -193557044 + (T)n Simple_repeat Simple_repeat 1 26 0 1 612 474 360 0 20 chr1 3639440 3639590 -193555842 + RSINE1 SINE B4 3 149 -16 1 612 432 0 0 0 chr1 3639606 3639654 -193555778 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 612 22 35 0 0 chr1 3639657 3639686 -193555746 + AT_rich Low_complexity Low_complexity 1 29 0 1 612 683 277 116 22 chr1 3639757 3639938 -193555494 + B3 SINE B2 19 216 0 1 612 405 0 0 0 chr1 3640819 3640864 -193554568 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 612 236 202 33 22 chr1 3641195 3641286 -193554146 + GA-rich Low_complexity Low_complexity 2 93 0 1 612 663 193 52 7 chr1 3641961 3642097 -193553335 + B1_Mus2 SINE Alu 5 146 -1 1 612 260 211 79 0 chr1 3642221 3642297 -193553135 + MER4B-int LTR ERV1 1127 1208 -5550 1 612 415 220 67 39 chr1 3642374 3642478 -193552954 - PB1D10 SINE Alu 0 117 11 1 612 501 272 28 56 chr1 3642394 3642538 -193552894 - ID_B1 SINE B4 -53 171 32 1 612 1130 90 0 0 chr1 3642749 3642905 -193552527 + L1_Mus2 LINE L1 6411 6566 0 1 612 735 302 29 81 chr1 3643118 3643265 -193552167 + L1MC1 LINE L1 5545 5678 -655 1 612 2588 80 27 14 chr1 3643265 3643635 -193551797 + L1Md_F2 LINE L1 6208 6582 0 1 612 735 302 29 81 chr1 3643635 3643970 -193551462 + L1MC1 LINE L1 5679 6002 -331 1 612 665 206 8 16 chr1 3643972 3644100 -193551332 + ETnERV2-int LTR ERVK 7070 7196 -210 1 612 401 284 149 40 chr1 3644505 3644780 -193550652 + L1MC1 LINE L1 6017 6321 -23 1 612 243 61 0 0 chr1 3644980 3645013 -193550419 + (A)n Simple_repeat Simple_repeat 1 33 0 1 612 294 29 0 0 chr1 3645085 3645120 -193550312 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1 612 216 0 0 0 chr1 3645701 3645725 -193549707 + (A)n Simple_repeat Simple_repeat 1 24 0 1 612 2021 136 12 50 chr1 3645869 3646209 -193549223 + ORR1A2 LTR MaLR 1 327 0 1 612 628 294 32 7 chr1 3647103 3647257 -193548175 - B3A SINE B2 -39 159 2 1 612 423 0 0 0 chr1 3648297 3648344 -193547088 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 612 364 366 13 22 chr1 3648345 3648574 -193546858 - MER33 DNA MER1_type -79 245 19 1 612 430 271 81 34 chr1 3648891 3649040 -193546392 + RSINE1 SINE B4 1 156 -9 1 612 447 92 0 0 chr1 3649767 3649832 -193545600 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 612 816 264 6 0 chr1 3649836 3649995 -193545437 - B3A SINE B2 -38 160 1 1 612 1674 210 74 53 chr1 3650049 3650465 -193544967 - MTD LTR MaLR -10 397 1 1 612 225 0 0 0 chr1 3650815 3650840 -193544592 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 612 2516 155 73 24 chr1 3650867 3651335 -193544097 + RLTR16 LTR ERVK 13 503 -2 1 612 187 162 54 0 chr1 3653450 3653487 -193541945 - L3 LINE CR1 -1 4488 4450 1 612 926 239 24 0 chr1 3654790 3654995 -193540437 - B3 SINE B2 -6 210 1 1 612 225 231 28 84 chr1 3657833 3657904 -193537528 + YREP_Mm Unknown Unknown 925 991 -821 1 612 22 0 0 0 chr1 3657914 3657936 -193537496 + AT_rich Low_complexity Low_complexity 1 22 0 2 612 258 32 0 0 chr1 3659500 3659531 -193535901 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 612 204 158 0 0 chr1 3660086 3660124 -193535308 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 612 222 260 16 16 chr1 3661161 3661290 -193534142 + (CCG)n Simple_repeat Simple_repeat 1 129 0 2 612 233 297 9 35 chr1 3661469 3661584 -193533848 + C-rich Low_complexity Low_complexity 1 112 0 2 612 206 258 23 58 chr1 3661558 3661731 -193533701 + (CCCG)n Simple_repeat Simple_repeat 4 170 0 2 612 234 0 0 0 chr1 3662906 3662932 -193532500 + (A)n Simple_repeat Simple_repeat 1 26 0 2 612 558 0 0 0 chr1 3663145 3663207 -193532225 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 2 612 462 36 0 0 chr1 3663207 3663263 -193532169 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 612 1131 68 0 7 chr1 3663269 3663417 -193532015 - B1_Mus1 SINE Alu 0 148 2 2 612 228 284 15 0 chr1 3664092 3664159 -193531273 + L2b LINE L2 3308 3375 0 2 612 188 296 19 0 chr1 3664412 3664466 -193530966 + MIR SINE MIR 53 107 -155 2 612 242 325 107 8 chr1 3664999 3665120 -193530312 + L2 LINE L2 874 1006 -2413 2 612 381 22 0 0 chr1 3665264 3665310 -193530122 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 612 291 265 66 41 chr1 3665559 3665681 -193529751 + L2 LINE L2 1490 1614 -1805 2 612 1335 247 73 47 chr1 3666146 3666651 -193528781 - RMER4B LTR ERVK -9 576 1 2 612 246 266 15 15 chr1 3666672 3666737 -193528695 + L2 LINE L2 2415 2479 -940 2 612 2495 170 7 12 chr1 3668122 3668551 -193526881 + RMER20B LTR ERVK 10 436 -191 2 612 2430 111 32 8 chr1 3668551 3668924 -193526508 + Lx LINE L1 6267 6648 -6 2 612 2797 244 66 99 chr1 3668942 3669180 -193526252 - RLTR25A LTR ERVK -169 934 685 2 612 230 0 33 0 chr1 3669180 3669210 -193526222 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 612 2797 244 66 99 chr1 3669210 3669937 -193525495 - RLTR25A LTR ERVK -419 684 1 2 613 784 221 92 14 chr1 3670198 3670405 -193525027 - Lx5 LINE L1 -3 7047 6825 2 613 195 42 0 0 chr1 3670489 3670513 -193524919 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 613 234 77 103 0 chr1 3670608 3670647 -193524785 + RMER20B LTR ERVK 427 469 -158 2 613 26 0 0 0 chr1 3670821 3670847 -193524585 + AT_rich Low_complexity Low_complexity 1 26 0 2 613 352 249 229 42 chr1 3671666 3671976 -193523456 + RLTR9A LTR ERVK 1 368 0 2 613 362 289 102 4 chr1 3672190 3672444 -193522988 + L1MA4 LINE L1 2922 3200 -2943 2 613 280 282 99 0 chr1 3672449 3672580 -193522852 + L1MA4 LINE L1 3305 3448 -2695 2 613 1228 190 39 4 chr1 3672583 3672816 -193522616 + ORR1A3 LTR MaLR 82 322 -4 2 613 1113 284 82 64 chr1 3672820 3673832 -193521600 + L1MA4 LINE L1 3460 4489 -1654 2 613 450 36 0 0 chr1 3674262 3674318 -193521114 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 613 711 262 96 4 chr1 3675377 3675626 -193519806 + L1MA4 LINE L1 4577 4848 -1295 2 613 356 229 77 31 chr1 3675914 3676108 -193519324 + L1MA4 LINE L1 5290 5492 -808 2 613 266 288 26 35 chr1 3676230 3676345 -193519087 + B4 SINE B4 2 115 -177 2 613 317 102 17 0 chr1 3676409 3676468 -193518964 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 613 350 331 75 55 chr1 3676525 3676581 -193518851 + L1MA4 LINE L1 5658 5709 -591 2 613 342 0 0 0 chr1 3676581 3676619 -193518813 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 613 501 17 0 0 chr1 3676619 3676676 -193518756 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 613 350 331 75 55 chr1 3676676 3676963 -193518469 + L1MA4 LINE L1 5710 6008 -292 2 613 3949 168 30 8 chr1 3677199 3677961 -193517471 + L1_Mur2 LINE L1 4642 5420 -457 2 613 3776 140 19 34 chr1 3677974 3678601 -193516831 + Lx LINE L1 6037 6654 0 2 613 248 421 113 11 chr1 3678628 3678813 -193516619 - MER45C DNA Tip100 -415 538 335 2 613 254 250 50 40 chr1 3678825 3678925 -193516507 - MLT1A1 LTR MaLR -4 404 304 2 613 1572 180 86 12 chr1 3679478 3679804 -193515628 + Lx LINE L1 6305 6654 0 2 613 197 319 0 42 chr1 3680208 3680280 -193515152 + L2a LINE L2 3343 3411 -15 2 613 701 229 6 22 chr1 3680734 3680913 -193514519 + B2_Mm2 SINE B2 2 177 -18 2 613 303 266 157 46 chr1 3681000 3681197 -193514235 + MamRep1161 DNA TcMar 80 298 -659 2 613 2549 140 86 5 chr1 3681345 3681789 -193513643 + RMER17B LTR ERVK 426 905 -53 2 613 1449 187 126 3 chr1 3681782 3682083 -193513349 + ORR1B1-int LTR MaLR 1172 1509 0 2 613 1688 195 90 38 chr1 3682083 3682450 -193512982 + ORR1B1 LTR MaLR 1 386 -8 2 613 233 309 58 104 chr1 3682463 3682723 -193512709 + L1MC3 LINE L1 7433 7680 -105 2 613 23 33 0 0 chr1 3682769 3682799 -193512633 + AT_rich Low_complexity Low_complexity 1 30 0 2 613 625 274 91 25 chr1 3682943 3683345 -193512087 + L1MD2 LINE L1 5597 6031 -211 2 613 516 354 64 41 chr1 3683665 3683883 -193511549 - B4A SINE B4 -69 223 1 2 613 316 325 0 0 chr1 3684008 3684088 -193511344 - RSINE1 SINE B4 -82 83 4 2 613 32 26 0 0 chr1 3684094 3684133 -193511299 + AT_rich Low_complexity Low_complexity 1 39 0 2 613 1080 240 107 20 chr1 3684465 3684709 -193510723 - Lx9 LINE L1 -29 7615 7344 2 613 1704 193 17 17 chr1 3684709 3685068 -193510364 + RLTR15 LTR ERVK 1 359 0 2 613 1080 240 107 20 chr1 3685068 3685168 -193510264 - Lx9 LINE L1 -301 7343 7241 2 613 1032 219 65 0 chr1 3685240 3685455 -193509977 + Lx9 LINE L1 6551 6779 -865 2 613 41 21 0 0 chr1 3685973 3686021 -193509411 + AT_rich Low_complexity Low_complexity 1 48 0 2 613 3608 106 11 2 chr1 3686021 3686549 -193508883 - L1_Mus1 LINE L1 -1 6566 6034 2 613 29386 94 18 12 chr1 3686551 3691621 -193503811 - L1VL1 LINE L1 -366 5517 421 2 613 182 150 23 91 chr1 3692264 3692308 -193503124 + MIRm SINE MIR 111 151 -125 2 613 195 42 0 0 chr1 3692368 3692392 -193503040 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2 613 23 54 0 0 chr1 3693591 3693628 -193501804 + AT_rich Low_complexity Low_complexity 1 37 0 2 613 2772 88 57 0 chr1 3693675 3694062 -193501370 + L1_Mus1 LINE L1 6157 6565 -2 2 613 660 238 7 47 chr1 3694650 3694800 -193500632 - B1_Mur4 SINE Alu -1 149 6 2 613 215 203 30 30 chr1 3694823 3694889 -193500543 + CT-rich Low_complexity Low_complexity 1 66 0 2 613 22 0 0 0 chr1 3696211 3696233 -193499199 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 186 43 0 0 chr1 3698116 3698139 -193497293 + (T)n Simple_repeat Simple_repeat 1 23 0 2 613 180 200 0 0 chr1 3698484 3698524 -193496908 + (TATG)n Simple_repeat Simple_repeat 4 43 0 2 613 904 312 90 15 chr1 3698592 3699034 -193496398 + Lx5 LINE L1 5902 6602 -858 2 613 1011 102 0 39 chr1 3699462 3699615 -193495817 + B1_Mus1 SINE Alu 2 148 0 2 613 186 43 0 0 chr1 3699636 3699659 -193495773 + (GGGGA)n Simple_repeat Simple_repeat 3 25 0 2 613 1297 61 0 11 chr1 3699661 3699843 -193495589 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 613 357 82 0 0 chr1 3699843 3699892 -193495540 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 2 613 1402 249 71 11 chr1 3700807 3701193 -193494239 - MTD LTR MaLR -14 405 3 2 613 240 288 73 42 chr1 3702063 3702255 -193493177 + Lx8 LINE L1 6059 6256 -1217 2 613 252 0 0 0 chr1 3702255 3702283 -193493149 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 613 522 0 0 0 chr1 3702283 3702341 -193493091 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 613 1136 346 71 9 chr1 3702363 3702909 -193492523 + Lx8 LINE L1 6480 7059 -414 2 613 25 0 0 0 chr1 3703287 3703312 -193492120 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 14661 240 53 52 chr1 3704641 3707436 -193487996 - Lx5 LINE L1 -21 7029 4279 2 613 216 0 0 0 chr1 3707436 3707460 -193487972 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2 613 14661 191 49 31 chr1 3707460 3708253 -193487179 - Lx5 LINE L1 -1602 4278 3485 2 613 231 36 0 0 chr1 3708253 3708281 -193487151 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 613 14661 191 49 31 chr1 3708281 3709374 -193486058 - Lx5 LINE L1 -2396 3484 2313 2 613 353 240 0 0 chr1 3709415 3709490 -193485942 - Lx5 LINE L1 -3709 2168 2094 2 613 902 204 192 55 chr1 3709490 3710000 -193485432 + RMER6C LTR ERVK 1 663 -27 2 613 2089 136 39 11 chr1 3710144 3710500 -193484932 - RLTR19B LTR ERVK 0 715 350 2 613 2215 178 58 13 chr1 3710509 3710983 -193484449 - RLTR20B3 LTR ERVK -53 524 1 2 613 2016 92 112 15 chr1 3710983 3711314 -193484118 - RLTR19B LTR ERVK -352 363 1 2 613 3531 218 23 49 chr1 3711314 3712581 -193482851 - Lx5 LINE L1 -3823 2057 876 2 613 331 281 80 27 chr1 3713232 3713382 -193482050 + MIRb SINE MIR 66 223 -45 2 613 447 233 48 0 chr1 3713891 3713994 -193481438 - B3 SINE B2 -108 108 1 2 613 421 350 19 13 chr1 3714095 3714254 -193481178 + MLT1A LTR MaLR 1 160 -214 2 613 1288 187 4 0 chr1 3714263 3714488 -193480944 - URR1A DNA MER1_type 0 226 1 2 613 239 207 0 33 chr1 3714565 3714625 -193480807 + A-rich Low_complexity Low_complexity 5 62 0 2 613 459 190 0 0 chr1 3714866 3715003 -193480429 + CT-rich Low_complexity Low_complexity 1 137 0 2 613 396 200 0 0 chr1 3715021 3715166 -193480266 + GA-rich Low_complexity Low_complexity 2 146 0 2 613 478 338 94 70 chr1 3715394 3715699 -193479733 - MER34A1 LTR ERV1 0 587 276 2 613 1279 287 19 28 chr1 3715699 3716122 -193479310 - MTD LTR MaLR 0 419 1 2 613 478 338 94 70 chr1 3716122 3716360 -193479072 - MER34A1 LTR ERV1 -312 275 31 2 613 199 393 86 17 chr1 3716568 3716801 -193478631 - L2a LINE L2 -268 3158 2910 2 613 402 74 0 0 chr1 3716947 3717001 -193478431 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2 613 4433 160 16 16 chr1 3717009 3717551 -193477881 - Lx LINE L1 0 6654 6112 2 613 7282 83 19 20 chr1 3717551 3718575 -193476857 + RLTR13D5 LTR ERVK 1 1023 0 2 613 4433 160 16 16 chr1 3718575 3718825 -193476607 - Lx LINE L1 -543 6111 5862 2 613 267 228 73 73 chr1 3718867 3719004 -193476428 - L1MCa LINE L1 -5409 636 500 2 613 311 331 12 29 chr1 3719230 3719401 -193476031 - L1MCa LINE L1 -6317 434 267 2 613 246 328 142 75 chr1 3720129 3720396 -193475036 - ORR1E LTR MaLR -19 340 56 2 613 396 0 0 0 chr1 3720646 3720690 -193474742 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 613 314 109 36 0 chr1 3720919 3720974 -193474458 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 2 613 25 0 0 0 chr1 3720995 3721020 -193474412 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 316 375 60 52 chr1 3721303 3721536 -193473896 + MIRb SINE MIR 6 240 -28 2 613 773 50 10 0 chr1 3722553 3722654 -193472778 + B1_Mm SINE Alu 46 147 0 2 613 4371 82 3 28 chr1 3723267 3723883 -193471549 + L1Md_F2 LINE L1 5982 6582 0 2 613 207 0 0 0 chr1 3723907 3723930 -193471502 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 613 30408 90 8 5 chr1 3724998 3730141 -193465291 + L1Md_F2 LINE L1 446 5586 -297 3 613 7705 67 0 9 chr1 3730141 3731134 -193464298 + L1Md_F2 LINE L1 5587 6570 -12 3 613 196 158 35 0 chr1 3732938 3732995 -193462437 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 3 613 3190 58 5 0 chr1 3733508 3733902 -193461530 + MTA_Mm LTR MaLR 1 396 0 3 613 578 60 0 12 chr1 3734469 3734553 -193460879 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 3 613 764 342 17 90 chr1 3734781 3735070 -193460362 + B4A SINE B4 7 274 -18 3 613 230 95 24 0 chr1 3735089 3735131 -193460301 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 613 497 16 16 0 chr1 3735131 3735192 -193460240 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 613 4303 207 49 2 chr1 3735362 3736372 -193459060 + L1_Mur3 LINE L1 298 1362 -4518 3 613 4678 60 2 31 chr1 3736457 3737076 -193458356 + L1Md_F2 LINE L1 5970 6570 -12 3 613 341 169 14 0 chr1 3737088 3737159 -193458273 + L1_Mur3 LINE L1 1346 1417 -4463 3 613 740 40 0 10 chr1 3737165 3737266 -193458166 + (CAAAA)n Simple_repeat Simple_repeat 2 101 0 3 613 22423 22 24 22 chr1 3737304 3739509 -193455923 + L1_Mm LINE L1 2658 4915 -968 3 613 228 183 46 77 chr1 3739509 3739574 -193455858 - RMER20A LTR ERVK -268 248 186 3 613 22423 22 24 22 chr1 3739574 3740227 -193455205 + L1_Mm LINE L1 4916 5585 -298 3 613 7720 55 25 3 chr1 3740228 3741203 -193454229 + L1Md_T LINE L1 5587 6582 0 3 613 6047 197 32 20 chr1 3741259 3742779 -193452653 - L1_Mur3 LINE L1 -2904 2976 1439 3 613 476 280 32 45 chr1 3742780 3742937 -193452495 - RLTR14 LTR ERV1 0 382 228 3 613 786 224 29 0 chr1 3742963 3743133 -193452299 + L1_Mur3 LINE L1 5453 5627 -253 3 613 1548 163 31 52 chr1 3743129 3743198 -193452234 - L1_Mur1 LINE L1 -37 5849 5791 3 613 3694 201 107 16 chr1 3743198 3743987 -193451445 - RMER13A LTR ERVK 0 860 1 3 613 1548 163 31 52 chr1 3743987 3744241 -193451191 - L1_Mur1 LINE L1 -96 5790 5533 3 613 5746 274 31 58 chr1 3745367 3747413 -193448019 + RodERV21-int LTR ERV1 729 2718 -2273 3 613 307 203 0 0 chr1 3747793 3747852 -193447580 + RodERV21-int LTR ERV1 3839 3897 -3194 3 613 228 211 0 37 chr1 3748129 3748183 -193447249 + T-rich Low_complexity Low_complexity 2 53 0 3 613 423 0 0 0 chr1 3748484 3748531 -193446901 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 3 613 283 314 45 45 chr1 3749583 3749783 -193445649 + RLTR14-int LTR ERV1 3170 3369 -1948 3 613 440 182 65 39 chr1 3750301 3750455 -193444977 + Lx7 LINE L1 7419 7576 -120 3 613 314 314 171 16 chr1 3750455 3750701 -193444731 - MLT-int LTR MaLR -984 751 468 3 613 308 161 0 82 chr1 3750695 3750756 -193444676 + PB1 SINE Alu 72 127 0 3 613 243 369 45 23 chr1 3750764 3750897 -193444535 - MTE-int LTR MaLR -1172 408 273 3 613 1072 133 15 0 chr1 3751690 3751885 -193443547 - L1_Mur2 LINE L1 -620 5257 5060 3 613 5767 158 22 2 chr1 3751884 3753238 -193442194 + Lx LINE L1 5259 6641 -13 3 613 230 140 80 0 chr1 3753269 3753319 -193442113 + (TTAA)n Simple_repeat Simple_repeat 4 57 0 3 613 708 103 0 0 chr1 3753519 3753635 -193441797 + (CA)n Simple_repeat Simple_repeat 2 117 0 3 613 233 379 11 0 chr1 3753974 3754069 -193441363 - MIRc SINE MIR -164 104 9 3 613 1404 272 92 41 chr1 3754347 3755082 -193440350 - L1M3 LINE L1 -1909 4231 3481 3 613 902 163 47 42 chr1 3755082 3755274 -193440158 - B2_Mm2 SINE B2 -1 194 2 3 613 1404 272 92 41 chr1 3755274 3755751 -193439681 - L1M3 LINE L1 -2660 3480 2958 3 613 404 357 53 8 chr1 3755752 3755995 -193439437 - L1M3 LINE L1 -3336 2807 2554 3 613 35306 33 16 12 chr1 3756131 3757780 -193437652 - L1Md_A LINE L1 0 6582 4909 3 613 228 183 46 77 chr1 3757780 3757845 -193437587 + RMER20A LTR ERVK 186 248 -268 3 613 35306 33 16 12 chr1 3757845 3761493 -193433939 - L1Md_A LINE L1 0 4908 1203 3 613 4121 105 32 84 chr1 3761459 3762231 -193433201 - L1Md_F LINE L1 -5380 1139 408 3 613 1743 182 37 82 chr1 3763047 3763448 -193431984 + RLTR41 LTR ERV1 62 444 -2 3 613 1848 169 32 45 chr1 3763499 3763902 -193431530 + RMER10B LTR ERVL 1 398 0 3 613 994 193 36 79 chr1 3764064 3764317 -193431115 - ORR1B1 LTR MaLR -8 386 145 3 613 471 281 70 34 chr1 3764306 3764492 -193430940 + B3A SINE B2 10 208 -8 3 613 647 314 27 11 chr1 3764498 3764685 -193430747 + B4 SINE B4 83 272 -20 3 613 432 37 0 0 chr1 3764689 3764743 -193430689 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 613 982 244 58 41 chr1 3764743 3765284 -193430148 + RMER6C LTR ERVK 224 716 -4 3 613 47 78 0 0 chr1 3765381 3765484 -193429948 + AT_rich Low_complexity Low_complexity 1 103 0 3 613 1444 316 87 21 chr1 3766478 3767192 -193428240 + Lx8 LINE L1 6137 6897 -576 3 613 1669 223 83 7 chr1 3767830 3768263 -193427169 + RMER4A LTR ERVK 1 466 0 3 613 189 0 0 0 chr1 3769582 3769603 -193425829 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 3 613 186 43 0 0 chr1 3769820 3769843 -193425589 + (T)n Simple_repeat Simple_repeat 1 23 0 3 613 849 20 0 0 chr1 3769973 3770072 -193425360 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 3 613 1843 47 4 29 chr1 3770077 3770319 -193425113 - L1Md_F2 LINE L1 -19 6563 6328 3 613 842 262 106 33 chr1 3771533 3771987 -193423445 + L1M2 LINE L1 4794 5280 -863 3 613 557 269 52 12 chr1 3772092 3772265 -193423167 + Lx8 LINE L1 6935 7114 -359 3 613 321 26 0 0 chr1 3772265 3772303 -193423129 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 613 404 246 107 0 chr1 3772429 3772667 -193422765 + L1M2 LINE L1 5311 5615 -574 3 613 311 278 26 0 chr1 3772700 3772815 -193422617 + L1MA4A LINE L1 5810 5927 -376 3 613 501 276 75 164 chr1 3773271 3773443 -193421989 - RLTR25B LTR ERVK 0 1028 868 3 613 2657 82 57 13 chr1 3773443 3773826 -193421606 - MTB LTR MaLR 0 400 1 3 613 616 246 55 123 chr1 3773826 3774236 -193421196 - RLTR25B LTR ERVK -161 867 402 3 613 181 0 69 0 chr1 3774236 3774265 -193421167 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 3 613 342 257 16 187 chr1 3774265 3774313 -193421119 - RLTR25B LTR ERVK -627 401 354 3 613 1336 125 5 27 chr1 3774336 3774558 -193420874 - Lx2 LINE L1 -6 6991 6775 3 613 2182 93 111 0 chr1 3774558 3774911 -193420521 - Lx2 LINE L1 -354 6643 6252 3 613 1580 207 24 79 chr1 3774911 3775289 -193420143 - RLTR25B LTR ERVK -671 357 1 3 613 324 0 0 0 chr1 3775337 3775373 -193420059 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 613 251 336 84 0 chr1 3777849 3777980 -193417452 - MIR SINE MIR -53 209 68 3 613 293 242 10 62 chr1 3778178 3778275 -193417157 + L1MA4A LINE L1 6165 6256 -44 3 613 520 302 87 87 chr1 3778277 3778542 -193416890 + B4A SINE B4 5 269 -23 3 613 529 257 27 49 chr1 3778634 3778668 -193416764 - RMER20B LTR ERVK -214 413 379 3 613 597 64 0 0 chr1 3778668 3778746 -193416686 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 613 529 257 27 49 chr1 3778746 3778895 -193416537 - RMER20B LTR ERVK -249 378 234 3 613 23 33 0 0 chr1 3779197 3779227 -193416205 + AT_rich Low_complexity Low_complexity 1 30 0 3 613 21 0 0 0 chr1 3779746 3779767 -193415665 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 447 92 0 0 chr1 3780239 3780304 -193415128 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 613 273 275 113 28 chr1 3781111 3781253 -193414179 + L2a LINE L2 3264 3417 -9 3 613 25 31 0 0 chr1 3781290 3781322 -193414110 + AT_rich Low_complexity Low_complexity 1 32 0 3 613 1295 175 36 4 chr1 3781712 3781964 -193413468 + RLTR28 LTR ERVL 22 281 -243 3 613 2980 59 19 31 chr1 3781984 3782404 -193413028 - L1Md_F2 LINE L1 -10 6572 6158 3 613 3483 56 0 0 chr1 3782404 3782834 -193412598 + L1Md_F2 LINE L1 5738 6167 -415 3 613 1177 203 8 4 chr1 3782835 3783082 -193412350 + RLTR28 LTR ERVL 277 524 0 3 613 1120 318 81 9 chr1 3783257 3783702 -193411730 + Lx7 LINE L1 6804 7280 -416 3 613 239 206 16 16 chr1 3783758 3783822 -193411610 + T-rich Low_complexity Low_complexity 2 65 0 3 613 21 0 0 0 chr1 3783916 3783937 -193411495 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 233 397 31 42 chr1 3783987 3784179 -193411253 + LTR85c LTR Gypsy? 634 823 0 3 613 362 276 10 10 chr1 3784278 3784377 -193411055 + MamRep605 Unknown Unknown 404 502 -374 3 613 266 355 62 25 chr1 3785076 3785238 -193410194 + MLT1B LTR MaLR 1 168 -222 3 613 386 286 31 0 chr1 3785252 3785350 -193410082 + PB1D7 SINE Alu 19 119 -1 3 613 252 367 12 65 chr1 3785388 3785557 -193409875 + MLT1B LTR MaLR 272 431 -36 3 613 247 259 71 36 chr1 3785964 3786048 -193409384 + MIRc SINE MIR 93 179 -89 3 613 400 105 0 0 chr1 3786483 3786540 -193408892 - Lx3_Mus LINE L1 -1129 5880 5824 3 613 6210 197 25 59 chr1 3786655 3787908 -193407524 - Lx5 LINE L1 0 7050 5833 3 613 1136 116 15 73 chr1 3787908 3788113 -193407319 - B2_Mm2 SINE B2 0 195 3 3 613 6210 197 25 59 chr1 3788113 3788241 -193407191 - Lx5 LINE L1 -1218 5832 5716 3 613 739 197 0 0 chr1 3788241 3788378 -193407054 - Lx5 LINE L1 -359 5518 5382 3 613 2587 132 17 7 chr1 3788379 3788791 -193406641 - RLTR13D5 LTR ERVK 0 1023 608 3 613 2261 69 6 50 chr1 3788791 3789128 -193406304 - RLTRETN_Mm LTR ERVK 0 322 1 3 613 1086 93 0 7 chr1 3789128 3789279 -193406153 - MMETn-int LTR ERVK 0 4844 4695 3 613 227 313 78 57 chr1 3789279 3789472 -193405960 - RLTR13D5 LTR ERVK -486 472 276 3 613 35755 47 9 12 chr1 3789472 3793993 -193401439 - MMETn-int LTR ERVK -336 4508 1 3 613 2235 72 6 50 chr1 3793993 3794330 -193401102 - RLTRETN_Mm LTR ERVK 0 322 1 3 613 3885 103 42 17 chr1 3794330 3794924 -193400508 - RLTR13D5 LTR ERVK -410 613 5 3 613 335 91 36 0 chr1 3794963 3795018 -193400414 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 3 613 2438 164 10 131 chr1 3795029 3795143 -193400289 - Lx5 LINE L1 -515 5362 5284 3 613 1042 70 0 78 chr1 3795143 3795297 -193400135 - B1_Mus2 SINE Alu -5 142 1 3 613 2438 164 10 131 chr1 3795297 3795433 -193399999 - Lx5 LINE L1 -594 5283 5179 3 613 6126 35 0 0 chr1 3795433 3796157 -193399275 - L1Md_T LINE L1 -2 6580 5857 3 613 2438 164 10 131 chr1 3796157 3796516 -193398916 - Lx5 LINE L1 -699 5178 4826 3 613 5480 160 34 16 chr1 3796511 3798191 -193397241 - L1Md_F LINE L1 -3786 2097 387 3 613 185 41 19 93 chr1 3798225 3798279 -193397153 + T-rich Low_complexity Low_complexity 4 53 0 3 613 15220 173 77 31 chr1 3798279 3798449 -193396983 - Lx5 LINE L1 -1072 4805 4636 3 613 276 53 0 0 chr1 3798449 3798487 -193396945 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 76 15220 182 73 29 chr1 3798487 3802012 -193393420 - Lx5 LINE L1 -1242 4635 882 3 614 16653 102 21 4 chr1 3804994 3809703 -193385729 - L1Md_F2 LINE L1 -2 6580 177 3 614 253 186 29 0 chr1 3809777 3809847 -193385585 + GA-rich Low_complexity Low_complexity 2 73 0 3 614 447 324 45 73 chr1 3809935 3810155 -193385277 + B3 SINE B2 3 216 0 3 614 225 65 0 0 chr1 3810506 3810537 -193384895 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 614 585 0 0 0 chr1 3810569 3810634 -193384798 + (GAGAA)n Simple_repeat Simple_repeat 3 67 0 3 614 738 242 10 96 chr1 3810647 3810844 -193384588 - ORR1C2 LTR MaLR -197 187 8 3 614 25 31 0 0 chr1 3811559 3811591 -193383841 + AT_rich Low_complexity Low_complexity 1 32 0 3 614 459 0 0 0 chr1 3812786 3812837 -193382595 + (T)n Simple_repeat Simple_repeat 1 51 0 3 614 7021 39 1 0 chr1 3813915 3814758 -193380674 + L1Md_T LINE L1 5739 6582 0 3 614 33861 85 1 1 chr1 3814995 3821250 -193374182 - L1Md_F2 LINE L1 -1 6581 327 4 614 3831 185 5 7 chr1 3821249 3822034 -193373398 - L1Md_A LINE L1 -5493 1231 229 4 614 202 158 52 17 chr1 3824292 3824350 -193371082 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 614 621 49 0 0 chr1 3824356 3824437 -193370995 + (CATA)n Simple_repeat Simple_repeat 2 82 0 4 614 770 274 160 10 chr1 3824611 3824899 -193370533 + MER2 DNA MER2_type 15 345 0 4 614 275 104 21 0 chr1 3825864 3825912 -193369520 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 614 508 262 172 81 chr1 3826085 3826259 -193369173 + B3 SINE B2 1 198 0 4 614 408 272 370 36 chr1 3826989 3827265 -193368167 - MTEa LTR MaLR 0 379 12 4 614 255 286 50 20 chr1 3827289 3827389 -193368043 + L1MB4 LINE L1 353 455 -6152 4 614 1718 312 76 43 chr1 3827398 3828125 -193367307 + Lx8 LINE L1 6440 7190 -283 4 614 340 266 107 40 chr1 3828208 3828357 -193367075 + RMER15 LTR ERVL 417 575 0 4 614 198 0 0 0 chr1 3828916 3828938 -193366494 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 614 4948 101 88 9 chr1 3828944 3829713 -193365719 - Lx LINE L1 -8 6646 5817 4 614 362 147 0 14 chr1 3829714 3829783 -193365649 + C-rich Low_complexity Low_complexity 1 68 0 4 614 1005 95 7 0 chr1 3829789 3829926 -193365506 - B1_Mus1 SINE Alu -6 142 5 4 614 1738 216 96 0 chr1 3830923 3831289 -193364143 + MTD LTR MaLR 13 413 -6 4 614 217 89 22 22 chr1 3832985 3833031 -193362401 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 614 229 315 121 18 chr1 3833934 3834099 -193361333 - Charlie5 DNA MER1_type -77 2547 2366 4 614 236 350 41 10 chr1 3834303 3834401 -193361031 - B4 SINE B4 -178 114 14 4 614 12670 63 1 0 chr1 3834523 3836949 -193358483 - L1Md_F2 LINE L1 -12 6570 4144 4 614 20262 107 33 3 chr1 3836952 3842914 -193352518 - L1Md_T LINE L1 -1 6581 98 4 614 948 217 11 35 chr1 3842902 3843188 -193352244 - L1VL1 LINE L1 -6127 295 17 4 614 247 341 12 0 chr1 3843206 3843288 -193352144 + MER2B DNA MER2_type 185 267 -69 4 614 22 70 0 0 chr1 3843445 3843488 -193351944 + AT_rich Low_complexity Low_complexity 1 43 0 4 614 21 0 0 0 chr1 3844274 3844295 -193351137 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 21 0 0 0 chr1 3844479 3844500 -193350932 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 3477 15 5 0 chr1 3844932 3845326 -193350106 + MTA_Mm LTR MaLR 1 396 0 4 614 1086 299 67 36 chr1 3845492 3845849 -193349583 - ORR1D2 LTR MaLR -2 368 1 4 614 200 211 0 0 chr1 3846428 3846466 -193348966 + T-rich Low_complexity Low_complexity 5 42 0 4 614 370 296 40 73 chr1 3846466 3846590 -193348842 - PB1D10 SINE Alu 0 120 1 4 614 788 281 67 13 chr1 3846605 3846657 -193348775 - MTE2b LTR MaLR -128 251 187 4 614 234 0 0 0 chr1 3846657 3846683 -193348749 + (CTTG)n Simple_repeat Simple_repeat 3 28 0 4 614 788 281 67 13 chr1 3846683 3846868 -193348564 - MTE2b LTR MaLR -193 186 1 4 614 22 35 0 0 chr1 3847253 3847282 -193348150 + AT_rich Low_complexity Low_complexity 1 29 0 4 614 499 327 53 116 chr1 3847423 3847803 -193347629 - MLT1B LTR MaLR -27 363 8 4 614 796 312 56 41 chr1 3847823 3848164 -193347268 + MTEa LTR MaLR 24 369 -10 4 614 619 279 36 40 chr1 3848222 3848446 -193346986 + Lx6 LINE L1 7210 7432 -28 4 614 1648 50 0 22 chr1 3848533 3848756 -193346676 - L1Md_F3 LINE L1 0 6584 6367 4 614 1224 45 0 0 chr1 3848756 3848913 -193346519 + L1Md_F3 LINE L1 6200 6356 -228 4 614 797 334 43 49 chr1 3848937 3849264 -193346168 + MTEa LTR MaLR 3 327 -52 4 614 185 0 40 0 chr1 3849269 3849294 -193346138 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 614 1033 272 68 79 chr1 3849294 3849661 -193345771 + MTE2a LTR MaLR 17 379 0 4 614 3146 195 3 23 chr1 3850834 3851596 -193343836 - Lx5 LINE L1 -4 7054 6311 4 614 1063 116 7 0 chr1 3851634 3851781 -193343651 + B1_Mus1 SINE Alu 1 148 0 4 614 384 294 17 8 chr1 3853095 3853215 -193342217 + HERV16-int LTR ERVL 1688 1808 -3188 4 614 234 260 40 27 chr1 3853285 3853360 -193342072 + MLT1D LTR MaLR 389 464 -41 4 614 878 182 19 42 chr1 3853384 3853596 -193341836 + MYSERV16_I-int LTR ERVK 608 814 -1512 4 614 2742 193 36 63 chr1 3853690 3854265 -193341167 + RLTR20B2 LTR ERVK 1 560 0 4 614 1324 199 209 19 chr1 3854268 3854642 -193340790 - RMER6C LTR ERVK -245 445 1 4 614 986 230 42 0 chr1 3856363 3856576 -193338856 - URR1B DNA MER1_type -3 222 1 4 614 5907 219 40 9 chr1 3856787 3858138 -193337294 + Lx5 LINE L1 5643 7035 -15 4 614 269 340 140 79 chr1 3858285 3858499 -193336933 + LTR16B2 LTR ERVL 64 290 -172 4 614 314 306 0 14 chr1 3858602 3858675 -193336757 + B3 SINE B2 1 72 -144 4 614 3758 145 113 12 chr1 3858676 3859395 -193336037 + RLTR25A LTR ERVK 1 791 -312 4 614 618 51 0 0 chr1 3859397 3859475 -193335957 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 614 315 121 0 0 chr1 3859475 3859533 -193335899 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 614 234 0 0 0 chr1 3859541 3859567 -193335865 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 614 409 174 14 0 chr1 3859570 3859639 -193335793 + RLTR25A LTR ERVK 1034 1103 0 4 614 504 247 13 52 chr1 3859639 3859793 -193335639 + B3 SINE B2 68 215 -1 4 614 557 255 46 66 chr1 3859794 3859918 -193335514 + B1_Mur1 SINE Alu 2 127 -22 4 614 2133 161 10 13 chr1 3859918 3860302 -193335130 + Lx2 LINE L1 6615 6997 0 4 614 557 255 46 66 chr1 3860302 3860328 -193335104 + B1_Mur1 SINE Alu 128 149 0 4 614 565 266 45 24 chr1 3860389 3860636 -193334796 - Lx7 LINE L1 -1658 6038 5787 4 614 229 210 99 0 chr1 3860663 3860744 -193334688 - Lx7 LINE L1 -1884 5812 5724 4 614 13066 121 17 4 chr1 3860753 3862936 -193332496 + L1_Mm LINE L1 2602 4813 -1070 4 614 252 219 57 9 chr1 3862967 3863073 -193332359 + L1MC4 LINE L1 7429 7539 -503 4 614 2939 202 60 11 chr1 3863255 3863909 -193331523 - Lx2B LINE L1 -408 6592 5907 4 614 1247 222 0 56 chr1 3863910 3864249 -193331183 + Lx2B LINE L1 6598 6917 -83 4 614 980 231 32 84 chr1 3864249 3864533 -193330899 - RLTR20A LTR ERVK 0 541 249 4 614 2673 155 125 15 chr1 3864551 3865652 -193329780 - MYSERV16_I-int LTR ERVK -29 2297 1076 4 614 2452 209 122 94 chr1 3865666 3866045 -193329387 - MYSERV16_I-int LTR ERVK -1484 1358 840 4 614 189 157 17 136 chr1 3866045 3866104 -193329328 + MER5A DNA MER1_type 24 75 -114 4 614 2452 209 122 94 chr1 3866104 3866714 -193328718 - MYSERV16_I-int LTR ERVK -1484 839 1 4 614 1015 110 0 18 chr1 3866785 3866951 -193328481 - L1Md_F2 LINE L1 -3 6579 6417 4 614 708 54 0 0 chr1 3866951 3867043 -193328389 + L1_Mm LINE L1 3464 3555 -2328 4 614 975 102 41 0 chr1 3867048 3867195 -193328237 + L1Md_F2 LINE L1 6417 6569 -13 4 614 286 350 8 42 chr1 3867232 3867387 -193328045 - B4 SINE B4 -13 152 2 4 614 259 216 216 0 chr1 3867388 3867490 -193327942 - RCHARR1 DNA MER1_type -478 496 373 4 614 1760 170 75 8 chr1 3868138 3868524 -193326908 - L1Md_F LINE L1 -6021 498 87 4 614 377 230 53 9 chr1 3869631 3869745 -193325687 + L1VL2 LINE L1 80 198 -6137 4 614 4054 138 29 1 chr1 3869841 3871052 -193324380 + L1Md_F LINE L1 675 1920 -3963 4 614 8322 100 10 0 chr1 3871052 3872326 -193323106 - L1_Mm LINE L1 -1080 4803 3517 4 614 13465 122 17 12 chr1 3872387 3875252 -193320180 + L1_Mus1 LINE L1 677 3555 -2328 4 614 2890 103 26 0 chr1 3875259 3875725 -193319707 - L1_Mm LINE L1 -1756 4127 3650 4 614 6272 93 45 3 chr1 3875722 3876811 -193318621 + L1_Mus1 LINE L1 5436 6566 -1 4 614 588 130 0 0 chr1 3876834 3876949 -193318483 + (CATA)n Simple_repeat Simple_repeat 2 116 0 4 614 451 218 27 7 chr1 3877070 3877218 -193318214 + Lx9 LINE L1 7493 7643 -1 4 614 21 0 0 0 chr1 3877229 3877250 -193318182 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 281 200 23 77 chr1 3878017 3878147 -193317285 + MER57A-int LTR ERV1 2200 2322 -3865 4 614 10401 86 3 3 chr1 3878260 3880456 -193314976 - L1Md_F2 LINE L1 0 6582 4391 4 614 7415 143 38 27 chr1 3880473 3882563 -193312869 - L1Md_F2 LINE L1 -3563 2320 217 4 614 22 35 0 0 chr1 3883181 3883210 -193312222 + AT_rich Low_complexity Low_complexity 1 29 0 4 614 3878 255 58 14 chr1 3883449 3884492 -193310940 + Lx6 LINE L1 6147 7235 -225 4 614 424 308 43 16 chr1 3884889 3885077 -193310355 - Lx5 LINE L1 -2 7048 6856 4 614 615 308 70 13 chr1 3885080 3885392 -193310040 + MER57A-int LTR ERV1 5439 5768 -419 4 614 8130 24 1 0 chr1 3886284 3887854 -193307578 - L1Md_A LINE L1 -2 6580 5010 4 614 5043 32 0 0 chr1 3887853 3888454 -193306978 + L1Md_A LINE L1 4407 5007 -876 4 614 1106 143 25 0 chr1 3888694 3888890 -193306542 + Lx LINE L1 6443 6643 -11 4 614 26 30 0 0 chr1 3890150 3890183 -193305249 + AT_rich Low_complexity Low_complexity 1 33 0 4 614 782 134 39 33 chr1 3892119 3892334 -193303098 + RMER17B LTR ERVK 312 551 -338 4 614 294 29 0 0 chr1 3892935 3892970 -193302462 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 614 27 0 0 0 chr1 3893411 3893438 -193301994 + AT_rich Low_complexity Low_complexity 1 27 0 4 614 1104 297 29 0 chr1 3894049 3894355 -193301077 - Lx8 LINE L1 -812 6661 6347 4 614 1502 264 54 52 chr1 3894592 3895092 -193300340 + Lx8 LINE L1 6729 7229 -244 4 614 1187 68 0 0 chr1 3895093 3895241 -193300191 + B1_Mus1 SINE Alu 1 148 0 4 614 248 191 0 31 chr1 3895242 3895307 -193300125 + GA-rich Low_complexity Low_complexity 2 64 0 4 614 22 56 0 0 chr1 3898204 3898240 -193297192 + AT_rich Low_complexity Low_complexity 1 36 0 4 614 21 0 0 0 chr1 3898335 3898356 -193297076 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 219 229 0 0 chr1 3899018 3899079 -193296353 + GA-rich Low_complexity Low_complexity 2 62 0 4 614 664 316 83 12 chr1 3899551 3899804 -193295628 - MER2 DNA MER2_type 0 345 75 4 614 692 329 100 20 chr1 3901777 3902078 -193293354 - MLT1A0 LTR MaLR -40 325 1 4 614 25 0 0 0 chr1 3902394 3902419 -193293013 + AT_rich Low_complexity Low_complexity 1 25 0 4 614 533 234 0 53 chr1 3902796 3902927 -193292505 - RLTR26 LTR ERVK 0 642 519 4 614 696 209 7 28 chr1 3902924 3903067 -193292365 - RLTR26 LTR ERVK -229 413 274 4 614 646 251 55 39 chr1 3903121 3903334 -193292098 - RLTR26 LTR ERVK -377 265 6 4 614 2728 93 9 49 chr1 3903372 3903800 -193291632 - RLTR9F LTR ERVK -4 411 1 5 614 198 0 0 0 chr1 3904495 3904517 -193290915 + (A)n Simple_repeat Simple_repeat 1 22 0 5 614 342 318 0 26 chr1 3905062 3905175 -193290257 + PB1D10 SINE Alu 1 110 -7 5 614 3683 154 45 119 chr1 3905695 3906673 -193288759 - RMER17A2 LTR ERVK 0 906 1 5 614 266 316 78 32 chr1 3906830 3906984 -193288448 - MIRc SINE MIR -26 242 82 5 614 578 79 11 0 chr1 3907703 3907792 -193287640 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 614 342 0 0 0 chr1 3907792 3907829 -193287603 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 614 681 333 0 0 chr1 3907841 3908006 -193287426 - B3A SINE B2 -33 165 1 5 614 459 0 0 0 chr1 3909825 3909876 -193285556 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 5 614 6291 80 7 2 chr1 3909898 3910759 -193284673 - L1_Mus3 LINE L1 -3 6635 5771 5 614 1547 67 5 9 chr1 3910771 3910981 -193284451 + L1_Mus3 LINE L1 5587 5795 -771 5 614 311 239 0 0 chr1 3911514 3911585 -193283847 + Lx9 LINE L1 6910 6980 -664 5 614 9938 54 3 8 chr1 3911587 3913548 -193281884 - L1Md_F2 LINE L1 -12 6570 4620 5 614 2432 222 67 25 chr1 3913548 3914189 -193281243 + Lx9 LINE L1 6977 7644 0 5 614 484 301 28 7 chr1 3914322 3914466 -193280966 - B1F SINE Alu 0 149 3 5 614 449 14 0 54 chr1 3914754 3914828 -193280604 + (GGAGA)n Simple_repeat Simple_repeat 2 71 0 5 614 24 32 0 0 chr1 3914991 3915022 -193280410 + AT_rich Low_complexity Low_complexity 1 31 0 5 614 209 163 47 0 chr1 3915771 3915787 -193279645 + A-rich Low_complexity Low_complexity 2 17 0 5 614 1117 106 6 11 chr1 3915787 3915968 -193279464 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 614 209 163 47 0 chr1 3915968 3915994 -193279438 + A-rich Low_complexity Low_complexity 18 45 0 5 614 421 310 0 119 chr1 3916001 3916177 -193279255 - Lx8 LINE L1 -198 7275 7121 5 614 1902 160 26 0 chr1 3917211 3917561 -193277871 - RLTR15 LTR ERVK 0 359 1 5 614 606 250 7 64 chr1 3918120 3918261 -193277171 + RSINE1 SINE B4 5 137 -28 5 614 863 10 10 0 chr1 3918271 3918375 -193277057 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 5 614 736 265 110 16 chr1 3918398 3918706 -193276726 + MTD LTR MaLR 17 406 -13 5 614 267 31 0 0 chr1 3919361 3919393 -193276039 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 614 511 284 145 36 chr1 3919415 3919720 -193275712 - Lx7 LINE L1 -372 5928 5593 5 614 452 123 14 14 chr1 3919727 3919801 -193275631 - B1_Mus2 SINE Alu 0 147 74 5 614 2155 284 68 61 chr1 3919860 3920693 -193274739 - Lx8 LINE L1 -9 7464 6626 5 614 829 292 130 35 chr1 3920818 3921187 -193274245 + Lx8 LINE L1 6219 6622 -851 5 614 427 257 93 29 chr1 3921213 3921353 -193274079 - B1_Mur2 SINE Alu 0 149 1 5 614 425 312 86 60 chr1 3921368 3921526 -193273906 - Lx7 LINE L1 -315 5565 5422 5 614 932 225 32 5 chr1 3921526 3921745 -193273687 - URR1B DNA MER1_type 0 225 1 5 614 448 316 76 52 chr1 3921745 3922183 -193273249 - Lx7 LINE L1 -459 5421 4987 5 614 196 30 29 29 chr1 3922941 3922975 -193272457 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 614 209 335 18 40 chr1 3923403 3923542 -193271890 - MIRc SINE MIR -111 157 23 5 614 910 188 0 0 chr1 3923645 3923789 -193271643 + B1_Mur4 SINE Alu 1 144 -6 5 614 3452 150 52 2 chr1 3924340 3924915 -193270517 + RLTR17 LTR ERVK 1 604 -88 5 614 2536 195 6 14 chr1 3924981 3925476 -193269956 + Lx9 LINE L1 6782 7272 -372 5 614 920 169 0 0 chr1 3925569 3925741 -193269691 + Lx2 LINE L1 6826 6997 0 5 614 360 281 106 53 chr1 3926148 3926415 -193269017 - L1MA4 LINE L1 -162 6138 5857 5 614 22 56 0 0 chr1 3926520 3926556 -193268876 + AT_rich Low_complexity Low_complexity 1 36 0 5 614 224 294 70 62 chr1 3927066 3927223 -193268209 - MIRc SINE MIR -4 264 95 5 614 21 0 0 0 chr1 3927712 3927733 -193267699 + AT_rich Low_complexity Low_complexity 1 21 0 5 614 625 324 120 39 chr1 3927839 3928196 -193267236 + Charlie13a DNA Charlie 468 853 -661 5 614 245 253 103 54 chr1 3928396 3928580 -193266852 + Charlie13a DNA Charlie 1302 1494 -20 5 614 735 238 32 28 chr1 3928998 3929214 -193266218 + RMER5 LTR ERV1 307 523 -11 5 614 21 71 0 0 chr1 3929414 3929456 -193265976 + AT_rich Low_complexity Low_complexity 1 42 0 5 614 411 355 92 48 chr1 3930463 3930777 -193264655 + ORR1E LTR MaLR 32 359 0 5 614 318 106 0 0 chr1 3930878 3930925 -193264507 + (A)n Simple_repeat Simple_repeat 1 47 0 5 614 248 161 16 0 chr1 3930983 3931045 -193264387 + (ATG)n Simple_repeat Simple_repeat 1 63 0 5 76 249 269 25 13 chr1 3932131 3932210 -193263222 + CT-rich Low_complexity Low_complexity 1 80 0 5 615 792 324 67 4 chr1 3932512 3932966 -193262466 + MT2A LTR ERVL 13 533 0 5 615 767 298 99 30 chr1 3933074 3933704 -193261728 + MERVL_2A-int LTR ERVL 119 854 -4907 5 615 565 322 45 20 chr1 3933728 3933975 -193261457 + MERVL_2A-int LTR ERVL 841 1093 -4621 5 615 2051 271 99 17 chr1 3934028 3934957 -193260475 - Lx6 LINE L1 -50 7410 6168 5 615 2209 174 68 16 chr1 3934960 3935571 -193259861 - Lx6 LINE L1 -1056 5994 5338 5 615 3732 169 41 7 chr1 3935562 3936272 -193259160 + Lx6 LINE L1 4630 5363 -514 5 615 782 336 26 20 chr1 3936292 3936923 -193258509 + MERVL_2A-int LTR ERVL 1178 1860 -3897 5 615 387 312 97 92 chr1 3936999 3937346 -193258086 - RLTR9A LTR ERVK -8 401 1 5 615 1219 312 89 0 chr1 3937346 3937750 -193257682 + MERVL_2A-int LTR ERVL 1851 2290 -3424 5 615 1929 152 12 9 chr1 3937758 3938104 -193257328 + RLTR15 LTR ERVK 13 359 0 5 615 250 267 13 13 chr1 3938838 3938914 -193256518 + MERVL_2A-int LTR ERVL 2472 2547 -2938 5 615 994 276 10 23 chr1 3938919 3939219 -193256213 + MERVL_2A-int LTR ERVL 3754 4049 -1712 5 615 1385 278 73 5 chr1 3939221 3939633 -193255799 + MERVL_2A-int LTR ERVL 5005 5444 -317 5 615 366 332 15 45 chr1 3939752 3939951 -193255481 + MERVL_2A-int LTR ERVL 5563 5755 -6 5 615 261 314 59 2 chr1 3939952 3940054 -193255378 + MTEa LTR MaLR 28 134 -245 5 615 2636 187 31 20 chr1 3940191 3940737 -193254695 + RLTR20B3 LTR ERVK 21 572 -5 5 615 264 220 0 0 chr1 3941075 3941125 -193254307 - MurSatRep1 Unknown Unknown -1395 742 693 5 615 455 316 140 18 chr1 3941154 3941775 -193253657 + L1M2 LINE L1 2168 2864 -3279 5 615 958 265 25 8 chr1 3941901 3942137 -193253295 + Lx6 LINE L1 6111 6350 -1110 5 615 3296 227 86 57 chr1 3942123 3942821 -193252611 + Lx6 LINE L1 6573 7303 -157 5 615 1294 65 5 93 chr1 3942821 3943025 -193252407 - L1_Mus2 LINE L1 -1 6565 6380 5 615 3296 227 86 57 chr1 3943025 3943189 -193252243 + Lx6 LINE L1 7304 7460 0 5 615 1989 136 65 35 chr1 3943548 3943945 -193251487 - RLTR9E LTR ERVK 0 409 1 5 615 6982 160 26 30 chr1 3943956 3945972 -193249460 + Lx2B LINE L1 4988 7000 0 5 615 2214 181 11 52 chr1 3946101 3946567 -193248865 + L1_Mur2 LINE L1 53 499 -6213 5 615 826 274 72 67 chr1 3946567 3946942 -193248490 + RMER17C LTR ERVK 1 377 -33 5 615 9662 122 22 83 chr1 3946943 3947445 -193247987 + Lx4A LINE L1 1436 1938 -3939 5 615 3417 65 38 27 chr1 3947445 3947922 -193247510 + RLTR45 LTR ERVK 1 482 0 5 615 9662 122 22 83 chr1 3947922 3949005 -193246427 + Lx4A LINE L1 1939 2921 -2956 5 615 2774 65 191 0 chr1 3949005 3949403 -193246029 - MT2C_Mm LTR ERVL 0 475 2 5 615 1026 98 0 0 chr1 3949403 3949535 -193245897 - B1_Mus1 SINE Alu -15 133 2 5 615 9662 122 22 83 chr1 3949535 3950062 -193245370 + Lx4A LINE L1 2922 3421 -2456 5 615 438 137 0 0 chr1 3950060 3950133 -193245299 + Lx4A LINE L1 5007 5079 -798 5 615 1140 89 0 6 chr1 3950128 3950298 -193245134 + Lx4A LINE L1 5630 5798 -1260 5 615 601 152 0 0 chr1 3950304 3950403 -193245029 + L1Md_F2 LINE L1 217 315 -6323 5 615 27736 93 12 5 chr1 3950399 3955306 -193240126 + L1Md_F2 LINE L1 639 5585 -298 5 615 6791 104 2 19 chr1 3955307 3956320 -193239112 + L1Md_F2 LINE L1 5587 6582 0 5 615 1672 169 65 0 chr1 3956320 3956658 -193238774 + Lx4A LINE L1 5792 6151 -907 5 615 565 253 21 35 chr1 3956670 3956844 -193238588 - MTD LTR MaLR -265 154 1 5 615 839 252 56 0 chr1 3957197 3957377 -193238055 - L1_Mur3 LINE L1 -1060 4820 4637 5 615 431 35 18 0 chr1 3957377 3957434 -193237998 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 615 839 252 56 0 chr1 3957434 3957519 -193237913 - L1_Mur3 LINE L1 -1244 4636 4541 5 615 246 292 69 0 chr1 3957549 3957679 -193237753 - L1MB4 LINE L1 -17 6163 6025 5 615 506 244 275 4 chr1 3957846 3958122 -193237310 + Lx9 LINE L1 7294 7644 0 5 615 661 289 59 17 chr1 3958393 3958629 -193236803 - MER89 LTR ERV1 0 559 314 5 615 389 198 159 0 chr1 3958708 3958834 -193236598 + L1M2 LINE L1 5633 5778 -513 5 615 703 260 14 0 chr1 3958863 3959009 -193236423 + B3A SINE B2 3 150 -48 5 615 378 57 0 0 chr1 3959009 3959062 -193236370 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 615 181 53 25 50 chr1 3959357 3959397 -193236035 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 615 237 65 0 0 chr1 3960408 3960439 -193234993 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 615 369 301 114 0 chr1 3961399 3961565 -193233867 - MER2 DNA MER2_type -133 212 28 5 615 21 36 0 0 chr1 3962606 3962634 -193232798 + AT_rich Low_complexity Low_complexity 1 28 0 5 615 5218 167 24 3 chr1 3962634 3963506 -193231926 - Lx4A LINE L1 -1 7057 6168 5 615 3612 106 43 33 chr1 3963508 3964172 -193231260 - L1Md_F LINE L1 -5358 1183 510 5 615 6569 121 11 2 chr1 3964202 3965515 -193229917 - L1_Mus3 LINE L1 -9 6629 5306 5 615 9746 140 2 1 chr1 3965525 3967194 -193228238 + L1_Mm LINE L1 3292 4963 -920 5 615 2439 140 13 13 chr1 3967223 3967620 -193227812 + RLTR9E LTR ERVK 13 409 0 5 615 7874 206 13 19 chr1 3967621 3969373 -193226059 + ETnERV2-int LTR ERVK 2 3380 -3864 5 615 1475 318 43 25 chr1 3969458 3970331 -193225101 + SRV_MM-int LTR ERVK 1704 2592 -3575 5 615 12818 90 9 33 chr1 3970576 3972480 -193222952 + ETnERV2-int LTR ERVK 4578 6435 -971 5 615 418 145 0 0 chr1 3972685 3972761 -193222671 + ETnERV2-int LTR ERVK 7331 7406 0 5 615 2370 155 12 12 chr1 3972771 3973175 -193222257 + RLTR9E LTR ERVK 6 409 0 5 615 1260 162 4 0 chr1 3973175 3973410 -193222022 + L1_Mm LINE L1 4958 5193 -690 5 615 292 250 0 0 chr1 3973416 3973472 -193221960 + ORR1B2 LTR MaLR 145 200 -129 5 615 3786 47 12 22 chr1 3973472 3973973 -193221459 - LTRIS2 LTR ERV1 0 564 69 5 615 969 171 54 25 chr1 3973973 3974213 -193221219 - MuRRS4-int LTR ERV1 -26 5037 4791 5 615 2803 174 81 82 chr1 3974332 3975421 -193220011 - MuRRS4-int LTR ERV1 -488 2811 1860 5 615 2963 166 148 28 chr1 3975412 3976720 -193218712 - MuRRS4-int LTR ERV1 -3216 1847 833 5 615 250 169 43 98 chr1 3976732 3976824 -193218608 - RMER16-int LTR ERVK -3657 2151 2065 5 615 2171 109 94 3 chr1 3976807 3977158 -193218274 - RMER16-int LTR ERVK -4321 1085 703 5 615 477 0 0 0 chr1 3977158 3977211 -193218221 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 5 615 844 123 65 41 chr1 3977211 3977380 -193218052 - RMER16-int LTR ERVK -5092 314 142 5 615 689 71 0 2 chr1 3977729 3977837 -193217595 - MuRRS4-int LTR ERV1 -3007 292 139 5 615 255 191 33 83 chr1 3977928 3978048 -193217384 - MuRRS4-int LTR ERV1 -3584 114 1 5 615 3750 53 12 22 chr1 3978048 3978549 -193216883 - LTRIS2 LTR ERV1 0 564 69 5 615 817 225 6 6 chr1 3978525 3978695 -193216737 + ORR1B2 LTR MaLR 198 367 0 5 615 559 277 7 0 chr1 3978741 3978878 -193216554 - Lx8 LINE L1 -493 6980 6843 5 615 4325 147 78 8 chr1 3978891 3979703 -193215729 + RMER17B LTR ERVK 1 958 0 5 615 1544 316 16 6 chr1 3979714 3980258 -193215174 - Lx8 LINE L1 -649 6824 6275 5 615 2465 264 69 19 chr1 3980288 3981287 -193214145 - Lx8 LINE L1 -1790 5906 4858 5 615 250 321 0 110 chr1 3981778 3981960 -193213472 - RMER4B LTR ERVK -417 168 7 5 615 730 207 14 20 chr1 3982745 3982893 -193212539 + B1_Mur4 SINE Alu 3 149 -1 5 615 1652 120 18 197 chr1 3984333 3984831 -193210601 + RMER17C LTR ERVK 1 409 -1 5 615 478 271 149 20 chr1 3985363 3985713 -193209719 - L1_Rod LINE L1 -256 5591 5197 5 615 835 301 56 50 chr1 3985724 3986444 -193208988 + L1M2 LINE L1 4526 5249 -894 5 615 216 0 0 0 chr1 3986569 3986593 -193208839 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 615 203 304 76 24 chr1 3986877 3987004 -193208428 + MIR SINE MIR 38 170 -98 6 615 6847 182 30 9 chr1 3987343 3987917 -193207515 - Lx2B LINE L1 -1 6999 6412 6 615 2634 46 12 3 chr1 3987917 3988241 -193207191 - IAPLTR2b LTR ERVK 0 327 1 6 615 6847 172 91 6 chr1 3988241 3989152 -193206280 - Lx2B LINE L1 -589 6411 5425 6 615 636 14 0 0 chr1 3990391 3990464 -193204968 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 6 615 522 46 0 0 chr1 3990469 3990534 -193204898 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 615 432 37 0 0 chr1 3990955 3991009 -193204423 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 615 34 42 0 0 chr1 3991488 3991536 -193203896 + AT_rich Low_complexity Low_complexity 1 48 0 6 615 864 169 185 0 chr1 3991766 3991955 -193203477 - URR1B DNA MER1_type 0 225 2 6 615 252 143 0 0 chr1 3992235 3992277 -193203155 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 615 21 36 0 0 chr1 3992483 3992511 -193202921 + AT_rich Low_complexity Low_complexity 1 28 0 6 615 796 254 12 0 chr1 3992591 3992764 -193202668 + MER3 DNA MER1_type 35 209 0 6 615 1974 192 37 0 chr1 3993129 3993503 -193201929 + L1VL4 LINE L1 17 404 -5898 6 615 5333 152 263 11 chr1 3993499 3994312 -193201120 + L1_Mus4 LINE L1 4252 5083 -800 6 615 5167 147 57 17 chr1 3994312 3995231 -193200201 + RMER17B LTR ERVK 1 955 -3 6 615 7021 94 72 4 chr1 3995231 3996442 -193198990 + L1_Mus4 LINE L1 5084 6636 0 6 615 30 69 0 0 chr1 3996442 3996500 -193198932 + AT_rich Low_complexity Low_complexity 1 58 0 6 615 21 36 0 0 chr1 3997176 3997204 -193198228 + AT_rich Low_complexity Low_complexity 1 28 0 6 615 22 0 0 0 chr1 3997273 3997295 -193198137 + AT_rich Low_complexity Low_complexity 1 22 0 6 615 441 0 0 0 chr1 3998110 3998159 -193197273 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 615 1529 303 135 53 chr1 3998966 3999913 -193195519 - Tigger6a DNA MER2_type -58 1025 1 6 615 435 331 11 6 chr1 4000129 4000308 -193195124 + CT-rich Low_complexity Low_complexity 1 180 0 1 615 237 132 0 0 chr1 4000810 4000848 -193194584 + (T)n Simple_repeat Simple_repeat 1 38 0 2 615 193 294 73 114 chr1 4001759 4001882 -193193550 + L2c LINE L2 3258 3375 -12 3 615 302 329 0 70 chr1 4002181 4002234 -193193198 + B1F SINE Alu 4 52 -97 4 615 1192 61 7 0 chr1 4002234 4002381 -193193051 + B1_Mus1 SINE Alu 1 148 0 5 615 371 249 0 36 chr1 4002381 4002484 -193192948 + PB1D10 SINE Alu 42 149 0 4 615 1508 300 131 25 chr1 4003150 4003960 -193191472 + Lx8 LINE L1 6384 7279 -194 6 615 820 269 20 15 chr1 4004118 4004318 -193191114 + B3 SINE B2 5 205 -11 7 615 856 109 86 0 chr1 4004491 4004619 -193190813 + B1_Mus1 SINE Alu 1 139 -9 8 615 249 33 0 0 chr1 4004619 4004649 -193190783 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 615 270 115 0 0 chr1 4007130 4007182 -193188250 + (T)n Simple_repeat Simple_repeat 1 52 0 1 615 7103 94 9 4 chr1 4007420 4008417 -193187015 + Lx3_Mus LINE L1 6008 7009 0 1 615 15739 15 0 0 chr1 4009817 4011708 -193183724 + L1Md_A LINE L1 3696 5586 -297 1 615 8714 20 0 0 chr1 4011708 4012704 -193182728 + L1Md_A LINE L1 5587 6582 0 1 615 282 279 124 35 chr1 4012799 4012944 -193182488 + LTR48 LTR ERV1 3 160 -627 1 615 336 333 114 5 chr1 4013481 4013692 -193181740 - L1ME3 LINE L1 -169 5993 5760 1 615 261 283 54 32 chr1 4013998 4014184 -193181248 - L1ME3 LINE L1 -780 5366 5177 1 615 363 289 28 43 chr1 4018542 4018683 -193176749 + RMER15 LTR ERVL 352 490 -85 1 615 27 62 0 0 chr1 4018753 4018801 -193176631 + AT_rich Low_complexity Low_complexity 1 48 0 1 615 366 120 24 24 chr1 4019076 4019161 -193176271 + GA-rich Low_complexity Low_complexity 3 87 0 1 615 859 282 108 31 chr1 4019169 4019494 -193175938 + MTD LTR MaLR 70 419 0 1 615 198 0 0 0 chr1 4020912 4020934 -193174498 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 615 195 69 0 0 chr1 4021083 4021112 -193174320 + (A)n Simple_repeat Simple_repeat 1 29 0 2 615 1141 221 59 0 chr1 4021388 4021659 -193173773 + L1_Mur3 LINE L1 4017 4303 -1577 2 615 2271 253 105 21 chr1 4021655 4022492 -193172940 + Lx7 LINE L1 6795 7680 -16 2 615 225 265 79 50 chr1 4022866 4023005 -193172427 - ALINE LINE RTE -335 282 140 2 615 799 186 26 90 chr1 4024039 4024228 -193171204 - URR1B DNA MER1_type 0 225 49 2 615 257 309 74 69 chr1 4025381 4025583 -193169849 - L2 LINE L2 -416 3003 2801 2 615 1341 221 59 36 chr1 4025718 4025983 -193169449 + RLTR16 LTR ERVK 141 403 -102 2 615 228 35 0 0 chr1 4025983 4026012 -193169420 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 615 1341 221 59 36 chr1 4026012 4026103 -193169329 + RLTR16 LTR ERVK 404 504 -1 2 615 337 318 8 0 chr1 4026103 4026235 -193169197 - Lx9 LINE L1 -214 7430 7298 2 615 236 229 97 119 chr1 4026635 4026769 -193168663 - MER5B DNA MER1_type -11 167 37 2 615 246 81 0 0 chr1 4027977 4028014 -193167418 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 615 310 271 16 33 chr1 4028041 4028163 -193167269 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 3 615 1650 189 68 3 chr1 4028306 4028614 -193166818 + ORR1B2 LTR MaLR 1 328 -39 3 615 1854 101 0 0 chr1 4028614 4028901 -193166531 + MusHAL1 LINE L1 1771 2057 -655 3 615 5661 78 4 4 chr1 4028902 4029683 -193165749 + L1Md_F LINE L1 214 994 -5525 3 615 568 397 40 26 chr1 4030637 4030986 -193164446 - LTR16C LTR ERVL -133 356 3 3 615 337 167 0 0 chr1 4031312 4031366 -193164066 + ORR1B2 LTR MaLR 312 365 -2 3 615 443 305 36 0 chr1 4031590 4031757 -193163675 + MER58B DNA MER1_type 3 175 -166 3 615 229 255 0 0 chr1 4031841 4031892 -193163540 + MER58B DNA MER1_type 279 326 -15 3 615 457 305 96 37 chr1 4032796 4033014 -193162418 - MLT1E2 LTR MaLR -8 619 389 3 615 998 156 29 11 chr1 4033006 4033181 -193162251 - URR1B DNA MER1_type -40 185 8 3 615 1696 183 66 58 chr1 4033291 4033508 -193161924 - RMER10B LTR ERVL 0 398 186 4 615 604 21 53 0 chr1 4033508 4033602 -193161830 + (GA)n Simple_repeat Simple_repeat 2 100 0 4 615 1696 183 66 58 chr1 4033602 4033779 -193161653 - RMER10B LTR ERVL -213 185 1 4 615 5111 157 94 33 chr1 4034119 4034851 -193160581 - RLTR25A LTR ERVK -1 1102 323 4 615 1812 124 124 0 chr1 4034851 4035150 -193160282 - Lx2 LINE L1 0 6997 6662 4 615 5111 157 94 33 chr1 4035150 4035455 -193159977 - RLTR25A LTR ERVK -781 322 1 4 615 4285 111 2 0 chr1 4035735 4036467 -193158965 - L1_Mus3 LINE L1 -710 5928 5195 4 615 5131 79 15 1 chr1 4036470 4037157 -193158275 + L1_Mus3 LINE L1 5940 6635 -3 4 615 600 96 25 42 chr1 4037407 4037527 -193157905 + L1_Mus4 LINE L1 6519 6636 0 4 615 408 117 0 0 chr1 4037700 4037777 -193157655 + (A)n Simple_repeat Simple_repeat 1 77 0 4 615 212 274 0 16 chr1 4037844 4037907 -193157525 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 615 437 233 39 20 chr1 4038326 4038479 -193156953 - L1MA4 LINE L1 -393 5907 5752 4 615 1570 140 22 18 chr1 4038570 4038847 -193156585 + Lx2 LINE L1 6710 6987 -10 4 615 234 0 0 0 chr1 4038849 4038875 -193156557 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 615 2939 80 27 0 chr1 4039118 4039359 -193156073 + L1VL1 LINE L1 667 907 -5515 5 615 204 40 0 0 chr1 4039359 4039384 -193156048 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 615 5332 97 10 0 chr1 4039384 4040297 -193155135 + L1VL1 LINE L1 908 1837 -1861 5 615 12804 104 17 1 chr1 4040318 4043056 -193152376 + L1_Mus3 LINE L1 3857 6638 0 5 615 975 269 64 117 chr1 4043701 4044093 -193151339 - MTE2a LTR MaLR -2 377 7 5 615 273 291 34 31 chr1 4044109 4044215 -193151217 - ID4_ SINE ID -40 112 6 5 615 1326 78 0 0 chr1 4044499 4044679 -193150753 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 615 633 174 37 0 chr1 4044699 4044808 -193150624 - B1_Mur3 SINE Alu -27 122 10 5 615 2726 92 2 27 chr1 4045394 4045421 -193150011 - L1_Mus4 LINE L1 -2 6634 6613 5 615 342 0 0 0 chr1 4045421 4045459 -193149973 + (TTA)n Simple_repeat Simple_repeat 3 40 0 5 615 2726 92 2 27 chr1 4045459 4045843 -193149589 - L1_Mus4 LINE L1 -24 6612 6233 5 615 803 87 0 0 chr1 4045848 4045963 -193149469 + L1_Mus4 LINE L1 6104 6218 -418 5 615 486 0 0 0 chr1 4046532 4046586 -193148846 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 615 507 33 0 0 chr1 4046586 4046646 -193148786 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 615 23 0 0 0 chr1 4047521 4047544 -193147888 + AT_rich Low_complexity Low_complexity 1 23 0 6 615 336 289 48 34 chr1 4048054 4048201 -193147231 - L2a LINE L2 -24 3402 3254 6 615 1279 192 0 0 chr1 4048240 4048464 -193146968 + URR1A DNA MER1_type 1 224 -2 6 615 224 190 49 49 chr1 4048713 4048774 -193146658 - L2 LINE L2 -551 2868 2808 6 615 388 345 0 25 chr1 4048946 4049068 -193146364 - B3 SINE B2 -93 123 5 6 615 3016 82 0 36 chr1 4049269 4049685 -193145747 - RLTR9D LTR ERVK -2 401 1 6 615 1271 191 26 91 chr1 4050096 4050457 -193144975 - Lx7 LINE L1 0 7696 7359 6 615 222 37 0 0 chr1 4050457 4050484 -193144948 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 615 1271 191 26 91 chr1 4050484 4050542 -193144890 - Lx7 LINE L1 -338 7358 7304 6 615 182 272 93 58 chr1 4050661 4050747 -193144685 - L3 LINE CR1 -1962 2527 2439 7 615 427 323 15 15 chr1 4053001 4053133 -193142299 + B4A SINE B4 144 275 -17 7 615 249 33 0 0 chr1 4053233 4053263 -193142169 + (CAT)n Simple_repeat Simple_repeat 1 30 0 7 615 3512 140 43 5 chr1 4053662 4054288 -193141144 + L1VL4 LINE L1 201 850 -5452 7 615 1545 129 4 0 chr1 4054286 4054549 -193140883 + MusHAL1 LINE L1 1629 1892 -820 7 615 12119 154 6 30 chr1 4054553 4055751 -193139681 + Lx2 LINE L1 3594 4737 -1146 7 615 189 0 0 0 chr1 4055751 4055772 -193139660 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 615 12119 151 13 17 chr1 4055772 4057657 -193137775 + Lx2 LINE L1 4738 6633 -364 7 615 1324 155 4 4 chr1 4057658 4057891 -193137541 + Lx2 LINE L1 6765 6997 0 7 615 1220 106 0 6 chr1 4059719 4059742 -193135690 - B2_Mm2 SINE B2 -14 181 159 7 615 255 31 0 0 chr1 4059742 4059774 -193135658 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 7 615 1220 106 0 6 chr1 4059774 4059931 -193135501 - B2_Mm2 SINE B2 -37 158 2 7 615 351 268 13 74 chr1 4060333 4060482 -193134950 + MLT2C2 LTR ERVL 1 140 -324 7 615 25 0 0 28 chr1 4060487 4060509 -193134923 + AT_rich Low_complexity Low_complexity 1 22 0 8 615 429 70 0 0 chr1 4060509 4060566 -193134866 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 615 25 0 0 28 chr1 4060566 4060579 -193134853 + AT_rich Low_complexity Low_complexity 1 13 0 8 615 239 196 20 0 chr1 4060583 4060634 -193134798 + MLT2C2 LTR ERVL 505 556 -7 7 76 31424 73 0 4 chr1 4060891 4065915 -193129517 + L1Md_F2 LINE L1 486 5588 -298 8 616 8105 43 2 0 chr1 4065916 4066896 -193128536 + L1Md_F2 LINE L1 5590 6571 -14 8 616 227 282 0 27 chr1 4067721 4067794 -193127638 + MTEb LTR MaLR 279 349 -30 8 616 39451 5 0 0 chr1 4069336 4075893 -193119539 - L1Md_A LINE L1 0 6582 56 8 616 315 146 0 0 chr1 4075898 4075953 -193119479 + (T)n Simple_repeat Simple_repeat 1 55 0 8 616 315 0 0 0 chr1 4076332 4076367 -193119065 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 616 21 0 0 0 chr1 4077040 4077061 -193118371 + AT_rich Low_complexity Low_complexity 1 21 0 8 616 643 222 71 0 chr1 4077555 4077681 -193117751 - RSINE1 SINE B4 -28 137 3 8 616 416 272 69 41 chr1 4077731 4078164 -193117268 - L1M3b LINE L1 -4541 1772 1182 9 616 258 32 0 0 chr1 4078222 4078253 -193117179 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 9 616 1458 236 75 24 chr1 4078797 4079171 -193116261 - MTD LTR MaLR -14 405 13 9 616 414 0 0 0 chr1 4080477 4080523 -193114909 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 616 268 239 15 0 chr1 4080524 4080591 -193114841 + L1MB8 LINE L1 1459 1526 -4858 9 616 1063 291 97 36 chr1 4080847 4081624 -193113808 + L1MB8 LINE L1 5589 6412 -2 9 616 25 0 0 0 chr1 4081835 4081860 -193113572 + AT_rich Low_complexity Low_complexity 1 25 0 9 616 261 270 37 14 chr1 4084730 4084845 -193110587 + PB1D10 SINE Alu 1 120 0 9 616 423 98 0 0 chr1 4085098 4085159 -193110273 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 616 341 301 88 9 chr1 4086011 4086125 -193109307 + MER58B DNA MER1_type 207 329 -12 9 616 225 304 49 25 chr1 4086130 4086211 -193109221 + B3A SINE B2 1 83 -115 9 616 216 320 0 0 chr1 4086890 4086965 -193108467 + (CATA)n Simple_repeat Simple_repeat 4 78 0 1 616 294 253 66 44 chr1 4087122 4087213 -193108219 - LTR80B LTR ERVL -298 285 190 1 616 313 370 7 28 chr1 4087757 4087899 -193107533 - ID_B1 SINE B4 -8 216 78 1 616 30 0 0 0 chr1 4089619 4089649 -193105783 + AT_rich Low_complexity Low_complexity 1 30 0 1 616 21 0 0 0 chr1 4090718 4090739 -193104693 + AT_rich Low_complexity Low_complexity 1 21 0 1 616 306 0 0 0 chr1 4090879 4090913 -193104519 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 1 616 2298 186 85 10 chr1 4090913 4091502 -193103930 - Lx2 LINE L1 -31 6977 6253 1 616 8642 84 56 11 chr1 4091512 4093049 -193102383 - L1_Mur1 LINE L1 0 3914 2169 1 616 1610 199 9 7 chr1 4093044 4093424 -193102008 - L1VL4 LINE L1 -5802 500 1 1 616 236 309 88 75 chr1 4093576 4093723 -193101709 - MLT1G3 LTR MaLR -242 353 205 1 616 331 287 74 63 chr1 4093859 4094034 -193101398 + MER20 DNA MER1_type 40 216 -3 1 616 4818 181 75 29 chr1 4094983 4096101 -193099331 + RLTR22_Mur LTR ERVK 4 1173 -675 1 616 6864 75 6 11 chr1 4096103 4097557 -193097875 - L1Md_F2 LINE L1 0 6582 5137 1 616 2777 179 146 10 chr1 4097557 4098165 -193097267 + RLTR22_Mur LTR ERVK 1158 1848 0 1 616 525 273 16 8 chr1 4098335 4098457 -193096975 + B1F SINE Alu 17 139 -10 1 616 348 257 9 56 chr1 4098912 4099019 -193096413 + B4 SINE B4 3 104 -188 1 616 26 74 0 0 chr1 4099605 4099659 -193095773 + AT_rich Low_complexity Low_complexity 1 54 0 1 616 7631 62 2 1 chr1 4099800 4101385 -193094047 - L1Md_F2 LINE L1 -3 6579 4994 1 616 1916 131 74 0 chr1 4101393 4101690 -193093742 + ORR1A2 LTR MaLR 1 319 -8 1 616 3212 186 49 2 chr1 4101815 4102407 -193093025 + RMER19B LTR ERVK 283 902 0 1 616 2688 264 47 34 chr1 4102533 4103273 -193092159 - RMER13A LTR ERVK -97 763 14 1 616 1570 330 75 45 chr1 4103432 4104156 -193091276 - MTD-int LTR MaLR -98 1482 737 1 616 1703 173 35 85 chr1 4104156 4104554 -193090878 - ORR1C1 LTR MaLR 0 378 1 1 616 1384 346 67 22 chr1 4104588 4105273 -193090159 - MTD-int LTR MaLR -863 717 2 1 616 1248 274 55 45 chr1 4105285 4105683 -193089749 - MTD LTR MaLR 0 419 18 1 616 614 307 39 53 chr1 4105701 4106059 -193089373 - ORR1E LTR MaLR -3 356 4 1 616 5297 92 20 8 chr1 4107113 4107993 -193087439 + MusHAL1 LINE L1 80 970 -1742 1 616 4241 127 19 1 chr1 4108006 4108693 -193086739 + Lx2 LINE L1 5945 6643 -354 1 616 1110 176 9 18 chr1 4108693 4108918 -193086514 + Lx2 LINE L1 6775 6997 0 1 616 1214 48 7 0 chr1 4109007 4109153 -193086279 + B1_Mm SINE Alu 1 147 0 1 616 945 144 0 0 chr1 4109171 4109331 -193086101 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 616 1962 193 219 26 chr1 4110224 4110722 -193084710 - Lx3C LINE L1 -21 6955 6362 1 616 555 108 0 0 chr1 4110725 4110808 -193084624 - Lx3B LINE L1 -230 6743 6661 1 616 426 20 0 0 chr1 4110882 4110933 -193084499 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 616 1401 194 39 98 chr1 4110973 4111441 -193083991 + RMER10A LTR ERVL 3 442 0 1 616 888 160 38 49 chr1 4111994 4112178 -193083254 + B2_Mm2 SINE B2 4 185 -10 1 616 291 258 98 8 chr1 4113548 4113636 -193081796 + B1F1 SINE Alu 11 102 -47 1 616 252 22 21 43 chr1 4113641 4113688 -193081744 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 1 616 1010 71 7 0 chr1 4113864 4114004 -193081428 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 616 183 114 0 0 chr1 4114004 4114038 -193081394 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 616 213 94 0 0 chr1 4114050 4114082 -193081350 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 616 270 133 148 16 chr1 4114100 4114161 -193081271 + MIRb SINE MIR 100 168 -100 1 616 233 311 14 0 chr1 4115912 4115986 -193079446 + GA-rich Low_complexity Low_complexity 5 79 0 1 616 251 189 53 13 chr1 4116014 4116089 -193079343 + RLTR42-int LTR ERVK 901 978 -5159 1 616 439 284 101 34 chr1 4116145 4116353 -193079079 + RLTR42-int LTR ERVK 1572 1793 -3729 1 616 662 158 61 7 chr1 4116648 4116795 -193078637 + RLTR42-int LTR ERVK 1965 2119 -3403 1 616 22370 134 18 9 chr1 4116847 4118809 -193076623 - L1_Mus4 LINE L1 -8 6628 4633 1 616 304 21 0 59 chr1 4118809 4118860 -193076572 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 616 22370 176 19 8 chr1 4118860 4119966 -193075466 - L1_Mus4 LINE L1 -1254 4632 3497 1 616 282 56 0 0 chr1 4119966 4120002 -193075430 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 616 22370 176 19 8 chr1 4120002 4122260 -193073172 - L1_Mus4 LINE L1 -2390 3496 1243 1 616 2994 21 0 0 chr1 4122260 4122597 -193072835 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 616 22370 132 2 7 chr1 4122597 4123469 -193071963 - L1_Mus4 LINE L1 -5415 1242 369 1 616 542 284 69 58 chr1 4123530 4123878 -193071554 + MYSERV6-int LTR ERVK 7155 7506 -1453 1 616 498 243 129 66 chr1 4124356 4124729 -193070703 + RMER17C-int LTR ERVK 2595 2885 -353 1 616 253 317 15 45 chr1 4124829 4124961 -193070471 + RMER17C-int LTR ERVK 4237 4364 -1773 1 616 441 289 53 50 chr1 4125007 4125328 -193070104 + RMER10A LTR ERVL 121 442 0 1 616 219 351 25 42 chr1 4125929 4126048 -193069384 - L2c LINE L2 -5 3382 3266 1 616 21 36 0 0 chr1 4127787 4127815 -193067617 + AT_rich Low_complexity Low_complexity 1 28 0 1 616 180 163 0 0 chr1 4130524 4130567 -193064865 + (CTTTG)n Simple_repeat Simple_repeat 2 44 0 1 616 1137 226 162 6 chr1 4130786 4131106 -193064326 - MTD LTR MaLR -9 410 41 1 616 227 333 45 11 chr1 4131456 4131544 -193063888 + ID_B1 SINE B4 1 91 -133 1 616 3117 66 0 12 chr1 4131700 4132100 -193063332 - L1_Mus1 LINE L1 0 6567 6173 1 616 711 0 0 0 chr1 4132578 4132657 -193062775 + (CAG)n Simple_repeat Simple_repeat 1 79 0 1 616 189 0 0 0 chr1 4133692 4133713 -193061719 + (A)n Simple_repeat Simple_repeat 1 21 0 1 616 12980 176 56 12 chr1 4133769 4134388 -193061044 - L1VL4 LINE L1 -1589 4297 3660 1 616 252 0 0 0 chr1 4134388 4134416 -193061016 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 616 12980 176 56 12 chr1 4134416 4134584 -193060848 - L1VL4 LINE L1 -2227 3659 3486 1 616 306 0 60 20 chr1 4134584 4134634 -193060798 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 616 12980 182 54 20 chr1 4134634 4137390 -193058042 - L1VL4 LINE L1 -2401 3485 629 1 616 699 127 9 0 chr1 4137458 4137568 -193057864 + URR1B DNA MER1_type 112 222 -3 1 616 303 264 22 0 chr1 4139852 4139943 -193055489 - Lx7 LINE L1 -1920 5776 5684 1 616 2247 252 35 26 chr1 4139958 4140646 -193054786 - Lx6 LINE L1 -950 6510 5817 1 616 3753 229 57 22 chr1 4140654 4140803 -193054629 + Lx6 LINE L1 6508 6657 -803 1 616 2660 88 91 3 chr1 4140803 4141189 -193054243 - RLTR9B2 LTR ERVK 0 420 1 1 616 3753 229 57 22 chr1 4141189 4141409 -193054023 + Lx6 LINE L1 6658 6879 -581 1 616 650 13 13 0 chr1 4141409 4141488 -193053944 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 616 3753 229 57 22 chr1 4141488 4142037 -193053395 + Lx6 LINE L1 6880 7458 -2 1 616 240 158 0 0 chr1 4143372 4143429 -193052003 + T-rich Low_complexity Low_complexity 2 58 0 1 616 1917 113 7 66 chr1 4145633 4145937 -193049495 + ORR1A2 LTR MaLR 1 286 -41 1 616 28346 105 12 6 chr1 4145948 4151122 -193044310 + L1Md_F2 LINE L1 382 5585 -298 1 616 6070 78 96 30 chr1 4151126 4152049 -193043383 + L1Md_F2 LINE L1 5587 6570 -12 1 616 414 88 0 0 chr1 4152050 4152107 -193043325 + ORR1A2 LTR MaLR 270 326 0 1 616 333 191 32 63 chr1 4153056 4153151 -193042281 - RLTR31_Mm LTR ERVK -2 559 468 1 616 1095 109 0 0 chr1 4153258 4153405 -193042027 + B1_Mus2 SINE Alu 1 147 0 1 616 29 78 0 0 chr1 4153464 4153528 -193041904 + AT_rich Low_complexity Low_complexity 1 64 0 1 616 2079 192 2 15 chr1 4154668 4155065 -193040367 - ORR1B1 LTR MaLR -2 392 1 1 616 3637 214 58 4 chr1 4155065 4155906 -193039526 - ORR1B1-int LTR MaLR 0 1509 623 1 616 1240 179 123 27 chr1 4155893 4156186 -193039246 - ORR1B1-int LTR MaLR -1642 321 1 1 616 2081 154 77 6 chr1 4156190 4156556 -193038876 - ORR1B1 LTR MaLR -2 392 1 1 616 955 287 116 19 chr1 4157522 4158356 -193037076 - MMAR1 DNA Mariner 0 1286 337 1 616 1503 214 29 20 chr1 4158457 4158806 -193036626 - MMAR1 DNA Mariner -933 353 2 1 616 212 311 20 74 chr1 4158873 4158972 -193036460 - MIRm SINE MIR -115 161 64 1 616 507 238 53 53 chr1 4158998 4159149 -193036283 + MER5B DNA MER1_type 12 162 -16 1 616 400 265 8 0 chr1 4160097 4160229 -193035203 + CT-rich Low_complexity Low_complexity 2 134 0 1 616 378 74 0 0 chr1 4161062 4161116 -193034316 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 616 888 94 0 0 chr1 4161118 4161246 -193034186 + (TG)n Simple_repeat Simple_repeat 1 128 0 1 616 494 367 64 17 chr1 4161249 4161482 -193033950 - B4A SINE B4 -23 269 26 1 616 7469 105 13 1 chr1 4161489 4163533 -193031899 - L1_Mus3 LINE L1 0 6638 4623 1 616 1357 73 17 0 chr1 4163535 4163713 -193031719 - B2_Mm2 SINE B2 -14 181 1 1 616 299 353 39 0 chr1 4163750 4163903 -193031529 - MIR SINE MIR -3 259 101 1 616 480 183 0 0 chr1 4164339 4164432 -193031000 + CT-rich Low_complexity Low_complexity 3 95 0 1 616 867 75 0 0 chr1 4165097 4165217 -193030215 + (TC)n Simple_repeat Simple_repeat 2 121 0 1 616 312 27 0 0 chr1 4165217 4165253 -193030179 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 616 32848 98 14 13 chr1 4166093 4171680 -193023752 + L1Md_F2 LINE L1 1 5586 -297 1 616 7672 65 4 4 chr1 4171681 4172663 -193022769 + L1Md_F2 LINE L1 5588 6569 -13 1 616 6009 184 39 44 chr1 4172675 4174080 -193021352 + Lx7 LINE L1 1257 2654 -3223 1 616 4298 267 105 43 chr1 4174088 4176019 -193019413 + Lx7 LINE L1 5284 7333 -363 1 616 195 129 0 0 chr1 4176021 4176052 -193019380 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 616 334 205 31 54 chr1 4176869 4176998 -193018434 + Lx9 LINE L1 7391 7516 -128 1 616 291 114 0 0 chr1 4176998 4177042 -193018390 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 616 24 0 0 0 chr1 4177157 4177181 -193018251 + AT_rich Low_complexity Low_complexity 1 24 0 1 616 268 247 81 61 chr1 4177503 4177701 -193017731 + L1MC5 LINE L1 7726 7927 -34 1 616 36064 36 1 7 chr1 4177759 4182947 -193012485 + L1Md_T LINE L1 440 5586 -297 1 616 7923 47 12 0 chr1 4182947 4183929 -193011503 + L1Md_T LINE L1 5587 6580 -2 1 616 2302 188 10 0 chr1 4184835 4185240 -193010192 + MTC LTR MaLR 5 413 -8 1 616 324 0 0 0 chr1 4185276 4185312 -193010120 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 616 207 100 0 0 chr1 4185522 4185552 -193009880 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 1 616 419 202 0 9 chr1 4186312 4186422 -193009010 + CT-rich Low_complexity Low_complexity 3 111 0 1 616 2105 290 98 1 chr1 4186458 4187118 -193008314 - Lx8 LINE L1 -178 7295 6572 1 616 498 33 0 0 chr1 4188141 4188201 -193007231 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 616 759 301 0 40 chr1 4189474 4189696 -193005736 + ID_B1 SINE B4 5 217 -7 1 616 23 78 0 0 chr1 4189696 4189747 -193005685 + AT_rich Low_complexity Low_complexity 1 51 0 1 616 40 49 0 0 chr1 4189886 4189947 -193005485 + AT_rich Low_complexity Low_complexity 1 61 0 1 616 366 259 0 0 chr1 4190122 4190203 -193005229 + RLTR18B LTR ERVK 10 90 -422 2 616 1071 89 6 6 chr1 4190208 4190367 -193005065 - B2_Mm2 SINE B2 -34 161 3 2 616 1025 140 115 101 chr1 4190374 4190652 -193004780 - MTC-int LTR MaLR -976 282 1 2 616 1507 228 50 52 chr1 4190652 4191074 -193004358 - MTC LTR MaLR 0 421 1 2 616 1344 66 49 0 chr1 4191075 4191258 -193004174 + B2_Mm2 SINE B2 1 192 -3 2 616 281 284 171 0 chr1 4191466 4191554 -193003878 - B3A SINE B2 -75 123 21 2 616 407 264 0 0 chr1 4191747 4191834 -193003598 - B1F SINE Alu -49 100 14 2 616 998 95 7 0 chr1 4191885 4192022 -193003410 + B1_Mus1 SINE Alu 4 141 -7 2 616 727 269 140 40 chr1 4192071 4192444 -193002988 + L1MA4 LINE L1 5410 5828 -472 2 616 1340 88 0 44 chr1 4192444 4192647 -193002785 + B2_Mm2 SINE B2 2 195 0 2 616 727 269 140 40 chr1 4192647 4192722 -193002710 + L1MA4 LINE L1 5829 5903 -397 2 616 376 225 70 3 chr1 4192752 4192856 -193002576 + B1F2 SINE Alu 5 110 -7 2 9 8556 74 3 24 chr1 4192972 4194867 -193000565 + L1_Mus1 LINE L1 4712 6567 0 2 617 1052 251 56 73 chr1 4194894 4195226 -193000206 + RLTR18B LTR ERVK 100 450 -62 2 617 1949 246 99 107 chr1 4195226 4195251 -193000181 + MTC-int LTR MaLR 113 140 -958 2 617 1001 234 4 4 chr1 4195251 4195483 -192999949 + Lx2B LINE L1 6765 6996 -4 2 617 2127 221 115 75 chr1 4195483 4196450 -192998982 + MTC-int LTR MaLR 141 1256 -2 2 617 1128 88 0 0 chr1 4197225 4197373 -192998059 + B1_Mus1 SINE Alu 1 148 0 2 617 27 0 0 0 chr1 4197373 4197400 -192998032 + AT_rich Low_complexity Low_complexity 1 27 0 2 617 21 0 0 0 chr1 4197605 4197626 -192997806 + AT_rich Low_complexity Low_complexity 1 21 0 2 617 299 279 26 96 chr1 4198080 4198092 -192997340 + MT2B LTR ERVL 152 155 -446 2 617 670 226 16 8 chr1 4198092 4198217 -192997215 + B1_Mus1 SINE Alu 1 126 -22 2 617 216 67 0 0 chr1 4198229 4198259 -192997173 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 617 2800 298 66 30 chr1 4198715 4199596 -192995836 - Lx7 LINE L1 0 7473 6524 2 617 2393 149 58 28 chr1 4199596 4200064 -192995368 + RLTR45 LTR ERVK 1 482 0 2 617 2800 291 63 31 chr1 4200064 4200337 -192995095 - Lx7 LINE L1 -1172 6524 6254 2 617 473 269 42 49 chr1 4200330 4200504 -192994928 + L1_Mur3 LINE L1 5402 5608 -2177 2 617 665 278 62 22 chr1 4200512 4200788 -192994644 - Lx7 LINE L1 -1450 6246 5960 2 617 2602 263 39 14 chr1 4200856 4201686 -192993746 + Lx7 LINE L1 5075 5925 -1771 2 617 314 0 49 0 chr1 4202376 4202417 -192993015 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 617 1381 150 4 0 chr1 4202420 4202647 -192992785 + Lx2 LINE L1 5021 5248 -629 2 617 692 131 19 9 chr1 4202666 4202774 -192992658 + RLTR13D1 LTR ERVK 1 109 -784 2 617 8968 6 0 0 chr1 4202779 4203887 -192991545 - L1Md_A LINE L1 0 6582 5475 2 617 1095 0 0 0 chr1 4203886 4204014 -192991418 + L1_Mm LINE L1 5166 5293 -590 2 617 2959 158 112 29 chr1 4204014 4204875 -192990557 + RLTR13D1 LTR ERVK 91 1023 0 2 617 8280 125 31 18 chr1 4204875 4205467 -192989965 + Lx2 LINE L1 5249 5841 -42 2 617 1047 106 0 0 chr1 4205467 4205608 -192989824 + B1_Mus1 SINE Alu 2 142 -6 2 617 351 0 0 0 chr1 4205613 4205652 -192989780 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 617 8280 104 70 41 chr1 4205652 4206760 -192988672 + Lx2 LINE L1 5836 6996 -1 2 617 21 0 0 0 chr1 4207436 4207457 -192987975 + AT_rich Low_complexity Low_complexity 1 21 0 2 617 23 68 0 0 chr1 4208014 4208058 -192987374 + AT_rich Low_complexity Low_complexity 1 44 0 2 617 542 319 11 7 chr1 4209286 4209462 -192985970 + Lx9 LINE L1 6308 6620 -1024 2 617 534 31 0 0 chr1 4209462 4209526 -192985906 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 2 617 24 32 0 0 chr1 4209526 4209557 -192985875 + AT_rich Low_complexity Low_complexity 1 31 0 2 617 10300 47 4 1 chr1 4209557 4211541 -192983891 - L1Md_F2 LINE L1 -15 6567 4575 2 617 421 258 0 0 chr1 4211541 4211634 -192983798 + Lx9 LINE L1 6614 6706 -938 2 617 749 222 32 0 chr1 4211633 4211818 -192983614 + Lx9 LINE L1 6859 7049 -595 2 617 690 246 168 14 chr1 4211792 4212089 -192983343 + Lx9 LINE L1 7287 7629 -15 2 617 293 365 62 19 chr1 4212412 4212574 -192982858 + LTR90A LTR LTR 806 974 -2 2 617 183 80 0 0 chr1 4213493 4213518 -192981914 + (TATG)n Simple_repeat Simple_repeat 2 26 0 2 617 263 349 45 36 chr1 4213882 4213992 -192981440 + MTEa LTR MaLR 49 159 -220 2 617 1245 175 70 20 chr1 4214774 4215093 -192980339 - RLTR17 LTR ERVK -458 234 1 2 617 1118 218 176 109 chr1 4215273 4215751 -192979681 + MT2A LTR ERVL 3 512 -21 2 617 459 320 0 31 chr1 4215837 4215966 -192979466 + B1_Mur1 SINE Alu 25 149 0 2 617 269 284 11 90 chr1 4216231 4216320 -192979112 + PB1D10 SINE Alu 1 82 -35 2 617 437 287 93 49 chr1 4217616 4217799 -192977633 + MER77 LTR ERVL 59 249 -358 2 617 1070 118 6 0 chr1 4218165 4218335 -192977097 + (GA)n Simple_repeat Simple_repeat 2 172 0 2 617 408 20 0 0 chr1 4219475 4219524 -192975908 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 617 4918 63 2 3 chr1 4219637 4220272 -192975160 - L1Md_F2 LINE L1 0 6582 5949 2 617 256 327 56 37 chr1 4221010 4221118 -192974314 + PB1D10 SINE Alu 1 110 -7 2 617 25 51 0 0 chr1 4221287 4221326 -192974106 + AT_rich Low_complexity Low_complexity 1 39 0 2 617 27 62 0 0 chr1 4221845 4221893 -192973539 + AT_rich Low_complexity Low_complexity 1 48 0 2 617 21 57 0 0 chr1 4222313 4222348 -192973084 + AT_rich Low_complexity Low_complexity 1 35 0 2 617 771 292 15 0 chr1 4222374 4222576 -192972856 - B3 SINE B2 -8 208 4 2 617 370 276 88 100 chr1 4222586 4222618 -192972814 - L1MB8 LINE L1 -1 6177 6150 2 617 813 277 130 24 chr1 4222618 4222995 -192972437 + MTD LTR MaLR 1 417 -2 2 617 370 276 88 100 chr1 4222995 4223212 -192972220 - L1MB8 LINE L1 -29 6149 5931 2 617 3551 151 18 117 chr1 4223221 4224036 -192971396 + L1VL4 LINE L1 11 745 -5557 2 617 886 78 78 0 chr1 4224029 4224170 -192971262 + MusHAL1 LINE L1 284 435 -2277 2 617 1545 136 190 56 chr1 4224170 4224544 -192970888 + RLTR45 LTR ERVK 1 424 -58 2 617 21861 120 3 19 chr1 4224544 4225581 -192969851 + L1_Mus1 LINE L1 2249 3254 -2629 2 617 3543 42 28 0 chr1 4225581 4226005 -192969427 + RLTR10C LTR ERVK 1 436 0 2 617 21861 110 5 15 chr1 4226005 4229503 -192965929 + L1_Mus1 LINE L1 2610 6567 0 2 617 210 37 0 0 chr1 4229503 4229530 -192965902 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 617 8955 163 23 8 chr1 4229530 4231158 -192964274 + L1_Mus1 LINE L1 2807 4459 -1427 2 617 4478 137 4 9 chr1 4231159 4231916 -192963516 + Lx2 LINE L1 5892 6644 -353 2 617 1361 149 0 5 chr1 4231917 4232139 -192963293 + Lx2 LINE L1 6777 6997 0 2 617 611 217 104 58 chr1 4232319 4232673 -192962759 - L1M3 LINE L1 -573 5610 5222 2 617 231 36 0 0 chr1 4232673 4232701 -192962731 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 617 272 262 61 766 chr1 4232701 4232728 -192962704 - L1M3 LINE L1 -919 5224 5197 2 617 568 268 12 41 chr1 4233028 4233199 -192962233 + RCHARR1 DNA MER1_type 66 231 -743 2 617 290 391 48 34 chr1 4233948 4234157 -192961275 + MamSINE1 SINE tRNA 47 258 -32 2 617 809 295 125 11 chr1 4234396 4234756 -192960676 + Lx8 LINE L1 6816 7216 -257 2 617 23 68 0 0 chr1 4235574 4235618 -192959814 + AT_rich Low_complexity Low_complexity 1 44 0 2 617 2474 89 0 3 chr1 4235907 4236235 -192959197 + ORR1A2 LTR MaLR 1 327 0 2 617 3720 50 0 4 chr1 4236489 4236951 -192958481 + L1Md_F2 LINE L1 6123 6582 0 2 617 1768 264 47 6 chr1 4237167 4237678 -192957754 - Lx7 LINE L1 -346 7350 6819 2 617 293 368 100 43 chr1 4237844 4238008 -192957424 + MLT1A1 LTR MaLR 64 250 -158 2 617 291 93 0 0 chr1 4238008 4238051 -192957381 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 617 3336 18 0 0 chr1 4238060 4238445 -192956987 + L1Md_A LINE L1 6198 6582 0 2 617 293 368 100 43 chr1 4238445 4238571 -192956861 + MLT1A1 LTR MaLR 260 380 -28 2 617 24 77 0 0 chr1 4238730 4238782 -192956650 + AT_rich Low_complexity Low_complexity 1 52 0 2 617 3858 70 9 4 chr1 4239590 4240146 -192955286 + L1Md_F2 LINE L1 645 1203 -5521 2 617 33360 44 2 2 chr1 4240113 4244569 -192950863 + L1Md_F2 LINE L1 1129 5586 -297 2 617 7809 58 1 2 chr1 4244570 4245553 -192949879 + L1Md_F2 LINE L1 5588 6569 -13 2 617 24 53 0 0 chr1 4245612 4245650 -192949782 + AT_rich Low_complexity Low_complexity 1 38 0 2 617 342 17 0 163 chr1 4246509 4246812 -192948620 + (GCCTG)n Simple_repeat Simple_repeat 1 253 0 2 617 239 237 0 7 chr1 4246812 4246948 -192948484 + (TCTCTG)n Simple_repeat Simple_repeat 6 140 0 2 617 506 178 6 0 chr1 4246972 4247135 -192948297 + (TCTCTG)n Simple_repeat Simple_repeat 6 169 0 2 617 321 113 19 0 chr1 4247168 4247221 -192948211 - HAL1-3A_ME LINE L1 -829 2029 1976 2 617 623 177 2 15 chr1 4247242 4247784 -192947648 + (TCTCTG)n Simple_repeat Simple_repeat 1 534 0 2 617 630 167 0 0 chr1 4247825 4248005 -192947427 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 617 554 148 4 31 chr1 4248009 4248266 -192947166 + (TCTCTG)n Simple_repeat Simple_repeat 1 249 0 2 617 252 148 0 0 chr1 4248439 4248500 -192946932 + (TCTCTG)n Simple_repeat Simple_repeat 4 64 0 2 617 452 311 0 0 chr1 4248540 4248717 -192946715 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 2 617 612 158 0 0 chr1 4248719 4248944 -192946488 + (TG)n Simple_repeat Simple_repeat 1 225 0 2 617 396 55 0 0 chr1 4251819 4251874 -192943558 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 617 298 254 14 14 chr1 4251874 4251946 -192943486 + 7SK RNA RNA 1 72 -259 2 617 273 339 64 0 chr1 4252247 4252356 -192943076 + L1M3de LINE L1 1196 1311 -5342 2 617 3118 109 11 4 chr1 4252889 4253547 -192941885 + L1VL2 LINE L1 492 1155 -2460 2 617 17945 171 29 5 chr1 4253543 4254499 -192940933 + L1_Mur1 LINE L1 1827 2797 -3089 2 617 233 22 20 61 chr1 4254499 4254548 -192940884 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 2 617 17945 171 29 5 chr1 4254548 4257276 -192938156 + L1_Mur1 LINE L1 2798 5599 -287 2 617 516 288 19 7 chr1 4257281 4257435 -192937997 - MTD LTR MaLR -257 162 7 2 617 346 304 118 10 chr1 4257802 4258091 -192937341 + L1MD2 LINE L1 41 360 -6187 2 617 308 342 0 40 chr1 4258338 4258490 -192936942 + L1MD2 LINE L1 907 1052 -5495 2 617 321 338 39 60 chr1 4258635 4258868 -192936564 + L1MD2 LINE L1 1184 1411 -5136 2 617 2860 87 14 7 chr1 4259014 4259430 -192936002 + BGLII LTR ERVK 1 419 -2 2 617 897 188 193 37 chr1 4259846 4260172 -192935260 + RMER3D-int LTR ERVK 485 861 -1981 2 617 2474 201 84 118 chr1 4260202 4261247 -192934185 + RMER3D-int LTR ERVK 670 1679 -1163 2 617 2693 194 61 46 chr1 4261266 4262091 -192933341 + RMER3D-int LTR ERVK 1925 2761 -81 2 617 260 7 0 0 chr1 4262109 4262154 -192933278 - L1_Mus2 LINE L1 0 6566 6529 2 617 396 171 23 0 chr1 4262154 4262242 -192933190 + RMER3D-int LTR ERVK 2748 2837 -5 2 617 2861 94 14 14 chr1 4262247 4262668 -192932764 + BGLII LTR ERVK 1 421 0 2 617 279 360 10 0 chr1 4263033 4263133 -192932299 + PB1 SINE Alu 4 104 -23 2 617 1111 269 113 31 chr1 4263109 4263658 -192931774 - Tigger1 DNA MER2_type -48 2370 1777 2 617 1852 208 72 10 chr1 4263761 4264150 -192931282 - MTC LTR MaLR -8 413 1 2 617 4819 278 71 25 chr1 4264168 4265514 -192929918 - Tigger1 DNA MER2_type -699 1719 317 2 617 450 0 0 0 chr1 4265514 4265564 -192929868 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 617 4819 278 71 25 chr1 4265564 4265810 -192929622 - Tigger1 DNA MER2_type -2102 316 56 2 617 3267 51 5 0 chr1 4266025 4266419 -192929013 + MTA_Mm LTR MaLR 1 396 0 3 617 294 260 15 0 chr1 4266858 4266977 -192928455 + L1M3 LINE L1 4011 4131 -2015 3 617 376 238 38 0 chr1 4267127 4267232 -192928200 + L1_Mur2 LINE L1 531 639 -6073 3 617 1890 304 66 63 chr1 4267224 4267520 -192927912 - Lx8 LINE L1 -499 6974 6682 3 617 3981 40 0 8 chr1 4267520 4268005 -192927427 - L1Md_F2 LINE L1 -5 6577 6097 3 617 1890 304 66 63 chr1 4268005 4268785 -192926647 - Lx8 LINE L1 -792 6681 5895 3 617 595 273 62 9 chr1 4268790 4269130 -192926302 + L1M3 LINE L1 4377 4734 -1406 3 617 320 301 80 28 chr1 4269139 4269722 -192925710 + L1M3 LINE L1 4854 5471 -700 3 617 271 284 134 37 chr1 4269764 4269980 -192925452 - L1M3 LINE L1 -330 5838 5602 3 617 1145 95 0 0 chr1 4270150 4270297 -192925135 + B1_Mus1 SINE Alu 2 148 0 3 617 183 80 0 0 chr1 4270314 4270339 -192925093 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 617 228 163 0 0 chr1 4271280 4271323 -192924109 + CT-rich Low_complexity Low_complexity 5 47 0 3 617 582 63 0 0 chr1 4271928 4272007 -192923425 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 617 821 279 131 23 chr1 4272707 4273059 -192922373 + Lx8 LINE L1 7047 7436 -37 3 617 929 279 44 22 chr1 4273146 4273461 -192921971 + Lx6 LINE L1 7135 7456 -4 3 617 433 257 35 0 chr1 4273532 4273645 -192921787 + Lx7 LINE L1 7205 7321 -375 3 617 180 0 0 0 chr1 4273677 4273697 -192921735 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 617 215 157 20 0 chr1 4273855 4273906 -192921526 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 617 757 326 80 103 chr1 4273923 4274313 -192921119 + MT2A LTR ERVL 63 443 -90 3 617 239 139 0 0 chr1 4274397 4274433 -192920999 + URR1B DNA MER1_type 1 36 -189 3 617 480 157 28 38 chr1 4274456 4274562 -192920870 + URR1B DNA MER1_type 121 225 0 3 617 699 193 0 0 chr1 4274990 4275104 -192920328 + polypurine Low_complexity Low_complexity 3 116 0 3 617 825 11 0 0 chr1 4275104 4275198 -192920234 + (GGGAA)n Simple_repeat Simple_repeat 3 96 0 3 617 699 318 14 0 chr1 4275198 4275345 -192920087 + polypurine Low_complexity Low_complexity 1 148 0 3 617 1174 81 6 6 chr1 4275346 4275519 -192919913 + (GGAAA)n Simple_repeat Simple_repeat 1 173 0 3 617 4627 86 23 3 chr1 4275802 4275888 -192919544 - L1_Mus3 LINE L1 -2 6636 6550 3 617 408 20 0 0 chr1 4275888 4275937 -192919495 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 617 4627 86 23 3 chr1 4275937 4276492 -192918940 - L1_Mus3 LINE L1 -89 6549 5983 3 617 4079 131 1 7 chr1 4276497 4277183 -192918249 + L1_Mm LINE L1 4908 5589 -294 3 617 2655 183 58 11 chr1 4277369 4277807 -192917625 + RLTR20B2 LTR ERVK 1 466 -94 3 617 405 0 0 0 chr1 4277807 4277852 -192917580 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 617 2628 183 58 11 chr1 4277852 4277948 -192917484 + RLTR20B2 LTR ERVK 467 559 -1 3 617 1299 221 129 6 chr1 4278308 4278641 -192916791 - ORR1D1 LTR MaLR 0 374 1 3 617 580 149 6 11 chr1 4278643 4278751 -192916681 - ORR1D1-int LTR MaLR -2 1368 1280 3 617 26 30 0 0 chr1 4278751 4278784 -192916648 + AT_rich Low_complexity Low_complexity 1 33 0 3 617 24 0 0 0 chr1 4278802 4278826 -192916606 + AT_rich Low_complexity Low_complexity 1 24 0 3 617 254 315 29 44 chr1 4278866 4279002 -192916430 + MER34A1 LTR ERV1 329 462 -125 3 617 415 181 84 30 chr1 4279236 4279367 -192916065 - Lx7 LINE L1 0 7696 7559 3 617 677 12 12 0 chr1 4279373 4279455 -192915977 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 3 617 1374 261 66 35 chr1 4279476 4279870 -192915562 - Lx7 LINE L1 -279 7417 7012 3 617 1605 243 66 17 chr1 4279867 4280277 -192915155 - Lx7 LINE L1 -1208 6488 6059 3 617 558 0 0 0 chr1 4280323 4280385 -192915047 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 3 617 369 0 0 0 chr1 4280387 4280428 -192915004 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 617 1816 205 97 3 chr1 4280430 4280822 -192914610 - Lx2B LINE L1 -27 6973 6545 3 617 876 194 177 0 chr1 4280854 4281102 -192914330 - L1_Mur3 LINE L1 -1786 4094 3803 3 617 5658 186 12 43 chr1 4281102 4282268 -192913164 + RLTR21 LTR ERVK 1 1237 -167 3 617 1181 106 33 11 chr1 4283129 4283310 -192912122 - B2_Mm2 SINE B2 -8 187 3 3 617 344 319 74 11 chr1 4283741 4283836 -192911596 + ID_B1 SINE B4 86 186 -38 3 617 245 244 58 0 chr1 4283893 4283979 -192911453 - L1M2 LINE L1 -3141 3002 2912 3 617 305 280 124 20 chr1 4284707 4285008 -192910424 + L1M2 LINE L1 2797 3141 -2999 3 617 474 312 84 29 chr1 4285180 4285596 -192909836 + L1M2 LINE L1 3445 3883 -2263 3 617 3411 115 2 0 chr1 4285715 4286202 -192909230 - L1_Mus2 LINE L1 -4 5879 5392 3 617 5118 69 9 19 chr1 4286202 4286897 -192908535 + L1_Mus2 LINE L1 5877 6564 -2 3 617 311 291 149 25 chr1 4286909 4287110 -192908322 + L1M2 LINE L1 3964 4189 -1957 3 617 923 201 26 30 chr1 4287398 4287629 -192907803 + L1_Mur2 LINE L1 889 1118 -5968 3 617 18135 147 41 42 chr1 4287618 4288406 -192907026 + L1_Mur2 LINE L1 2219 2973 -2904 3 617 1124 128 44 16 chr1 4288406 4288589 -192906843 + B2_Mm2 SINE B2 2 189 -6 3 617 18135 147 41 42 chr1 4288589 4288644 -192906788 + L1_Mur2 LINE L1 2974 2974 -2903 3 617 848 121 0 7 chr1 4288644 4288786 -192906646 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 3 617 18135 147 41 42 chr1 4288786 4291479 -192903953 + L1_Mur2 LINE L1 2974 5754 -123 3 617 6427 219 47 27 chr1 4291483 4294037 -192901395 - Lx7 LINE L1 -501 7195 4596 3 617 463 167 42 92 chr1 4294059 4294178 -192901254 + ORR1C2 LTR MaLR 44 156 -218 3 617 1148 197 10 0 chr1 4294336 4294544 -192900888 + ORR1C2 LTR MaLR 175 384 0 3 617 376 228 65 0 chr1 4294547 4294611 -192900821 - Lx7 LINE L1 -1446 4434 4365 3 617 306 0 0 0 chr1 4294611 4294645 -192900787 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 617 376 228 65 0 chr1 4294645 4294672 -192900760 - Lx7 LINE L1 -1516 4364 4338 3 617 386 305 9 19 chr1 4294933 4295040 -192900392 + RMER10B LTR ERVL 289 394 -4 3 617 3185 201 54 199 chr1 4295096 4295147 -192900285 - Lx7 LINE L1 -1543 4337 4277 3 617 315 0 0 0 chr1 4295147 4295182 -192900250 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 617 3185 201 54 199 chr1 4295182 4295832 -192899600 - Lx7 LINE L1 -1604 4276 3602 3 617 2724 75 40 0 chr1 4295832 4296203 -192899229 - L1Md_F2 LINE L1 -12 6570 6185 3 617 3185 201 54 199 chr1 4296203 4297071 -192898361 - Lx7 LINE L1 -2279 3601 2996 3 617 2185 212 93 34 chr1 4297065 4297213 -192898219 - Lx7 LINE L1 -16 7680 7510 3 617 182 37 0 36 chr1 4297213 4297241 -192898191 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 3 617 2185 211 97 39 chr1 4297241 4297704 -192897728 - Lx7 LINE L1 -187 7509 7044 3 617 234 62 0 0 chr1 4297704 4297736 -192897696 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 617 265 266 0 60 chr1 4297736 4297748 -192897684 - Lx7 LINE L1 -417 7043 7032 3 617 5995 227 42 36 chr1 4297762 4299904 -192895528 - Lx7 LINE L1 -2881 2999 843 3 617 438 274 42 12 chr1 4300254 4300420 -192895012 - Lx7 LINE L1 -6890 838 668 3 617 21 0 0 0 chr1 4302123 4302144 -192893288 + AT_rich Low_complexity Low_complexity 1 21 0 3 617 251 149 264 0 chr1 4303383 4303470 -192891962 + L1MD LINE L1 3573 3682 -2464 3 617 296 203 54 0 chr1 4303608 4303682 -192891750 + L1M5 LINE L1 3804 3881 -2265 3 617 371 276 188 48 chr1 4303704 4303997 -192891435 + L1M5 LINE L1 5401 5734 -445 3 617 3336 267 107 62 chr1 4304289 4306379 -192889053 - L1_Mur3 LINE L1 -2458 3422 1239 3 617 398 266 40 47 chr1 4307702 4307852 -192887580 + MER106B DNA MER1_type 1 149 -910 3 617 232 289 0 19 chr1 4307926 4307979 -192887453 + tRNA-Ala-GCY_ tRNA tRNA 17 68 -7 3 617 1246 192 8 0 chr1 4308690 4308929 -192886503 - L1_Mur3 LINE L1 -3180 2700 2460 3 617 564 65 0 0 chr1 4308929 4309006 -192886426 + (GTTTG)n Simple_repeat Simple_repeat 3 79 0 3 617 15170 91 9 1 chr1 4309034 4311869 -192883563 - L1_Mus1 LINE L1 0 6567 3713 3 617 2087 196 26 75 chr1 4311871 4312318 -192883114 - L1_Mur3 LINE L1 -3407 2473 2057 3 617 288 53 0 0 chr1 4312318 4312356 -192883076 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 617 2087 196 26 75 chr1 4312356 4312494 -192882938 - L1_Mur3 LINE L1 -3824 2056 1917 3 617 8900 179 128 139 chr1 4312494 4314030 -192881402 + L1_Mur3 LINE L1 2694 4528 -1352 3 617 3565 94 4 4 chr1 4314030 4314531 -192880901 + L1_Mus1 LINE L1 6067 6567 0 3 617 8900 179 128 139 chr1 4314531 4316044 -192879388 + L1_Mur3 LINE L1 4529 5710 -170 3 617 218 250 16 16 chr1 4316059 4316120 -192879312 + GA-rich Low_complexity Low_complexity 1 61 0 3 617 462 289 80 33 chr1 4316120 4316421 -192879011 + L1M2 LINE L1 4411 4725 -1418 3 617 251 273 0 13 chr1 4316563 4316641 -192878791 + LTR37A LTR ERV1 286 362 -64 3 617 239 267 35 71 chr1 4317195 4317308 -192878124 + RLTR18 LTR ERVK 4 112 -504 3 617 2801 184 50 19 chr1 4317308 4317850 -192877582 + RLTR18 LTR ERVK 58 616 0 3 617 4980 134 19 66 chr1 4317917 4318801 -192876631 + Lx2B LINE L1 6143 6985 -15 3 617 260 53 26 0 chr1 4319334 4319372 -192876060 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 617 385 237 92 42 chr1 4319413 4319663 -192875769 + Lx4A LINE L1 6670 6924 -52 3 617 222 111 43 22 chr1 4319673 4319689 -192875743 + polypurine Low_complexity Low_complexity 2 19 0 3 617 962 117 6 0 chr1 4319689 4319868 -192875564 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 617 222 111 43 22 chr1 4319868 4319897 -192875535 + polypurine Low_complexity Low_complexity 20 47 0 3 617 974 152 6 0 chr1 4319900 4320077 -192875355 + GA-rich Low_complexity Low_complexity 3 180 0 3 617 2286 86 51 0 chr1 4320120 4320456 -192874976 - L1_Mus1 LINE L1 -598 5969 5617 3 617 4405 79 0 3 chr1 4320456 4321038 -192874394 + L1_Mus1 LINE L1 5988 6567 0 3 617 188 67 33 0 chr1 4321084 4321114 -192874318 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 617 24 0 0 0 chr1 4321481 4321505 -192873927 + AT_rich Low_complexity Low_complexity 1 24 0 3 617 5556 64 0 0 chr1 4321505 4322206 -192873226 - L1_Mus1 LINE L1 -3 6564 5864 3 617 2216 106 6 3 chr1 4322206 4322546 -192872886 + L1_Mm LINE L1 3186 3526 -2357 3 617 490 260 40 23 chr1 4325067 4325244 -192870188 + L1_Rod LINE L1 908 1087 -6521 3 77 31446 89 13 5 chr1 4325260 4330412 -192865020 + L1Md_F2 LINE L1 392 5586 -297 3 618 7884 58 2 0 chr1 4330413 4331404 -192864028 + L1Md_F2 LINE L1 5588 6580 -2 3 618 2219 248 131 20 chr1 4331489 4332365 -192863067 + L1_Rod LINE L1 1156 2174 -3673 3 618 270 81 0 0 chr1 4332365 4332402 -192863030 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 618 2700 273 124 14 chr1 4332402 4333344 -192862088 + L1_Rod LINE L1 2175 3208 -2639 3 618 356 262 12 12 chr1 4333364 4333449 -192861983 + Lx9 LINE L1 5826 5910 -1734 3 618 710 10 40 0 chr1 4333488 4333587 -192861845 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 3 618 668 287 110 60 chr1 4333637 4334019 -192861413 + Lx9 LINE L1 7223 7623 -21 3 618 30 45 0 0 chr1 4334040 4334084 -192861348 + AT_rich Low_complexity Low_complexity 1 44 0 3 618 305 194 63 16 chr1 4343125 4343188 -192852244 + BC1_Mm scRNA scRNA 7 72 -80 3 618 2052 137 138 11 chr1 4343220 4343597 -192851835 + Lx3A LINE L1 6551 6975 -6 3 618 31 0 0 0 chr1 4343599 4343630 -192851802 + AT_rich Low_complexity Low_complexity 1 31 0 3 618 529 219 38 0 chr1 4343634 4343739 -192851693 - RLTR30 LTR ERV1 -185 194 86 3 618 414 204 0 22 chr1 4343845 4343935 -192851497 - RLTR30 LTR ERV1 -291 88 1 3 618 752 179 284 6 chr1 4344332 4344501 -192850931 + B3 SINE B2 1 216 0 3 618 34 0 0 0 chr1 4344501 4344535 -192850897 + AT_rich Low_complexity Low_complexity 1 34 0 3 618 4240 107 20 1 chr1 4345618 4346264 -192849168 + L1_Mm LINE L1 3776 4433 -1450 3 618 22 35 0 0 chr1 4346838 4346867 -192848565 + AT_rich Low_complexity Low_complexity 1 29 0 3 618 389 286 99 11 chr1 4347953 4348195 -192847237 + L1MA5 LINE L1 6010 6276 -24 3 618 3716 88 0 6 chr1 4350610 4351110 -192844322 - L1_Mus1 LINE L1 -1 6566 6070 3 618 456 146 19 0 chr1 4351263 4351366 -192844066 - Lx9 LINE L1 -20 7624 7520 3 618 447 68 0 0 chr1 4351369 4351428 -192844004 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 618 1307 197 86 10 chr1 4351428 4351717 -192843715 - Lx9 LINE L1 -168 7476 7173 3 618 330 45 0 0 chr1 4351717 4351761 -192843671 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 618 1307 197 86 10 chr1 4351761 4351784 -192843648 - Lx9 LINE L1 -472 7172 7141 3 618 1481 185 42 0 chr1 4351781 4352067 -192843365 + Lx9 LINE L1 6777 7074 -570 3 618 2637 117 30 21 chr1 4353294 4353729 -192841703 - BGLII_B LTR ERVK -2 439 1 4 618 238 395 53 0 chr1 4353739 4353891 -192841541 + MIRb SINE MIR 37 196 -72 4 618 664 294 94 30 chr1 4353900 4354135 -192841297 - MER2 DNA MER2_type 0 345 96 4 618 308 246 0 0 chr1 4354477 4354538 -192840894 - ID4 SINE ID -17 66 6 4 618 2838 152 56 52 chr1 4354571 4355142 -192840290 + RMER15 LTR ERVL 3 575 0 4 618 266 317 314 41 chr1 4356700 4356886 -192838546 - L2a LINE L2 -337 3089 2853 4 618 939 309 156 54 chr1 4357010 4357688 -192837744 + L1M4c LINE L1 45 788 -5596 4 618 387 0 0 0 chr1 4357688 4357731 -192837701 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 618 939 309 156 54 chr1 4357731 4358004 -192837428 + L1M4c LINE L1 789 1092 -5292 4 618 574 209 2 0 chr1 4359054 4359175 -192836257 + B3 SINE B2 2 124 -71 4 618 372 287 11 0 chr1 4359177 4359271 -192836161 + Lx8 LINE L1 7189 7283 -190 4 618 1916 174 70 35 chr1 4359272 4359671 -192835761 - MTC LTR MaLR 0 421 9 4 618 257 211 19 0 chr1 4359675 4359727 -192835705 + Lx8 LINE L1 7281 7333 -140 4 618 242 200 0 0 chr1 4359749 4359789 -192835643 + B4 SINE B4 1 40 -252 4 618 344 223 121 15 chr1 4360216 4360351 -192835081 - L1MB8 LINE L1 -137 6041 5893 4 618 890 241 36 0 chr1 4360564 4360759 -192834673 + B3 SINE B2 1 202 -14 4 618 573 42 0 0 chr1 4360759 4360831 -192834601 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 4 618 274 307 35 0 chr1 4360846 4360960 -192834472 + PB1D9 SINE Alu 3 120 0 4 618 230 277 0 0 chr1 4360960 4361007 -192834425 + polypurine Low_complexity Low_complexity 2 48 0 4 618 359 320 32 32 chr1 4361290 4361416 -192834016 - MIRb SINE MIR -30 238 113 4 618 412 266 5 29 chr1 4362416 4362540 -192832892 + PB1D10 SINE Alu 27 144 -5 4 618 24033 79 10 12 chr1 4362540 4365908 -192829524 + L1Md_F2 LINE L1 2226 5586 -297 4 618 7533 65 2 8 chr1 4365908 4366890 -192828542 + L1Md_F2 LINE L1 5587 6565 -17 4 618 231 36 0 0 chr1 4366890 4366918 -192828514 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 4 618 7533 65 2 8 chr1 4366918 4366929 -192828503 + L1Md_F2 LINE L1 6566 6574 -8 4 618 26 0 0 0 chr1 4366940 4366966 -192828466 + AT_rich Low_complexity Low_complexity 1 26 0 4 618 761 264 26 26 chr1 4368131 4368325 -192827107 + B3A SINE B2 4 197 -1 4 618 243 325 0 0 chr1 4368434 4368511 -192826921 - ID4 SINE ID -4 79 3 4 618 266 54 0 0 chr1 4368619 4368656 -192826776 - Lx LINE L1 -25 6629 6593 4 618 14650 141 36 12 chr1 4368652 4370772 -192824660 - Lx LINE L1 -281 6373 4178 4 618 604 50 0 47 chr1 4370772 4370878 -192824554 + (TA)n Simple_repeat Simple_repeat 1 101 0 4 618 14650 161 10 18 chr1 4370878 4371879 -192823553 - Lx LINE L1 -1706 4177 3212 4 618 6478 72 9 0 chr1 4371867 4372768 -192822664 + MusHAL1 LINE L1 1089 1997 -715 4 618 361 308 75 0 chr1 4372819 4372952 -192822480 - B1F SINE Alu -6 143 1 4 618 23 0 0 0 chr1 4372960 4372983 -192822449 + AT_rich Low_complexity Low_complexity 1 23 0 4 618 301 70 0 0 chr1 4373132 4373205 -192822227 + L1Md_F2 LINE L1 6523 6582 0 4 618 27 0 0 0 chr1 4373344 4373371 -192822061 + AT_rich Low_complexity Low_complexity 1 27 0 4 618 275 302 46 19 chr1 4374335 4374443 -192820989 - PB1D10 SINE Alu -2 115 5 4 618 233 276 39 171 chr1 4374609 4374814 -192820618 + MTEa LTR MaLR 201 378 -1 4 618 6192 224 98 44 chr1 4375296 4375410 -192820022 - Lx6 LINE L1 -49 7411 7292 4 618 225 65 0 0 chr1 4375410 4375441 -192819991 + (TATAA)n Simple_repeat Simple_repeat 2 32 0 4 618 9628 188 70 40 chr1 4375441 4378314 -192817118 - Lx6 LINE L1 -169 7291 4284 4 618 351 0 0 0 chr1 4378314 4378353 -192817079 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 618 9628 157 46 36 chr1 4378353 4378765 -192816667 - Lx6 LINE L1 -1597 4283 3872 4 618 834 267 114 27 chr1 4379479 4379783 -192815649 + MTE-int LTR MaLR 93 405 -1104 4 618 1579 73 0 0 chr1 4379783 4379989 -192815443 + L1_Mus2 LINE L1 5806 6011 -555 4 618 832 344 3 41 chr1 4380037 4380331 -192815101 + MTE-int LTR MaLR 1102 1384 -196 4 618 530 272 78 74 chr1 4380389 4380700 -192814732 - RMER1B Other Other -624 718 295 4 618 988 153 167 0 chr1 4380729 4380944 -192814488 - Lx2 LINE L1 -754 6243 5993 4 618 4379 122 89 7 chr1 4380946 4381654 -192813778 + Lx2 LINE L1 6232 6997 0 4 618 1717 148 168 49 chr1 4383092 4383461 -192811971 + MTC LTR MaLR 1 413 -8 4 618 212 154 0 0 chr1 4384275 4384314 -192811118 + T-rich Low_complexity Low_complexity 3 41 0 4 618 2813 99 17 0 chr1 4384838 4385242 -192810190 + RLTR9F LTR ERVK 1 411 -4 4 618 788 264 97 62 chr1 4385245 4385617 -192809815 + ETnERV2-int LTR ERVK 3 387 -2927 4 618 506 55 27 0 chr1 4385617 4385690 -192809742 + (TAAAA)n Simple_repeat Simple_repeat 5 79 0 4 618 7851 228 105 68 chr1 4385772 4386378 -192809054 + ETnERV2-int LTR ERVK 464 1181 -4225 4 618 3379 38 2 0 chr1 4386378 4386773 -192808659 + MTA_Mm LTR MaLR 1 396 0 4 618 9626 132 31 13 chr1 4386773 4388874 -192806558 + ETnERV2-int LTR ERVK 1182 4075 -3331 4 618 5888 145 13 0 chr1 4388865 4389768 -192805664 + ETnERV2-int LTR ERVK 4419 5333 -2073 4 618 3671 69 9 106 chr1 4389768 4390335 -192805097 - RLTR1B LTR ERV1 0 512 1 4 618 3446 62 21 0 chr1 4390335 4390803 -192804629 - RLTR1B-int LTR ERV1 0 3299 2822 4 618 739 125 0 0 chr1 4390806 4390918 -192804514 + RLTR1B-int LTR ERV1 154 265 -3034 4 618 846 185 146 18 chr1 4390903 4391123 -192804309 + MMERGLN-int LTR ERV1 131 378 -7178 4 618 321 103 154 0 chr1 4391094 4391172 -192804260 + RLTR1B-int LTR ERV1 264 353 -2946 4 618 249 232 0 35 chr1 4391179 4391237 -192804195 + RLTR9D LTR ERVK 309 364 -39 4 618 512 269 83 8 chr1 4391937 4392057 -192803375 + RSINE1 SINE B4 6 134 -31 4 618 192 40 0 0 chr1 4392057 4392082 -192803350 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 618 24 53 0 0 chr1 4392087 4392125 -192803307 + AT_rich Low_complexity Low_complexity 1 38 0 4 618 477 272 18 0 chr1 4392294 4392408 -192803024 + PB1D10 SINE Alu 1 116 -1 4 618 213 274 32 0 chr1 4392629 4392691 -192802741 - MIRc SINE MIR -125 143 80 4 618 460 277 123 32 chr1 4393087 4393307 -192802125 + MLT1B LTR MaLR 11 250 -140 4 618 532 250 18 27 chr1 4393450 4393561 -192801871 + RSINE1 SINE B4 56 165 0 4 618 4261 74 2 12 chr1 4393579 4394138 -192801294 - L1_Mus1 LINE L1 0 6567 6015 4 618 1022 275 84 24 chr1 4394280 4394612 -192800820 - MTEa LTR MaLR 0 379 28 4 618 489 80 0 0 chr1 4394828 4394903 -192800529 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 4 618 501 151 0 0 chr1 4394912 4395031 -192800401 + GA-rich Low_complexity Low_complexity 2 120 0 4 618 662 281 84 20 chr1 4395790 4396088 -192799344 + MLT1C LTR MaLR 21 337 -130 4 618 1297 234 81 29 chr1 4396177 4396524 -192798908 + ORR1D2 LTR MaLR 1 365 -5 4 618 274 330 165 0 chr1 4397220 4397335 -192798097 + B1F1 SINE Alu 1 134 -15 4 618 644 274 156 37 chr1 4397483 4397838 -192797594 + RMER5 LTR ERV1 70 466 -68 4 618 230 0 33 0 chr1 4399835 4399865 -192795567 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 618 339 302 0 0 chr1 4400376 4400502 -192794930 - L1MA10 LINE L1 -13 6321 6196 4 618 442 286 95 0 chr1 4400557 4400683 -192794749 - ID_B1 SINE B4 -6 218 81 4 618 663 311 37 6 chr1 4400686 4401010 -192794422 - L1MB1 LINE L1 -67 6122 5789 4 618 214 149 43 0 chr1 4401022 4401069 -192794363 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 618 258 179 0 0 chr1 4401069 4401125 -192794307 + GA-rich Low_complexity Low_complexity 2 57 0 4 618 602 279 88 38 chr1 4401219 4401558 -192793874 - L1MB1 LINE L1 -539 5644 5289 4 618 22 56 0 0 chr1 4403583 4403619 -192791813 + AT_rich Low_complexity Low_complexity 1 36 0 4 618 377 133 41 0 chr1 4403624 4403722 -192791710 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 618 726 113 0 0 chr1 4403736 4403869 -192791563 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 4 618 657 262 54 24 chr1 4403873 4404041 -192791391 + B3 SINE B2 42 214 -2 4 618 209 191 0 41 chr1 4404045 4404094 -192791338 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 4 618 209 361 36 0 chr1 4404781 4404864 -192790568 + MIRc SINE MIR 34 119 -149 4 618 1178 296 83 64 chr1 4405343 4405873 -192789559 - MER44B DNA MER2_type -4 546 7 4 618 2593 130 41 115 chr1 4406114 4406680 -192788752 - RLTR28 LTR ERVL 0 524 1 4 618 478 363 69 56 chr1 4407113 4407329 -192788103 + B4 SINE B4 63 281 -11 4 618 227 347 0 0 chr1 4407368 4407440 -192787992 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 618 656 222 131 20 chr1 4407649 4407847 -192787585 + RMER21B LTR ERV1 348 567 -275 4 618 697 138 122 0 chr1 4408476 4408599 -192786833 + B1_Mus2 SINE Alu 4 141 -6 4 618 1057 103 11 6 chr1 4408601 4408776 -192786656 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 4 618 297 75 0 0 chr1 4408776 4408816 -192786616 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 4 618 274 278 87 37 chr1 4408870 4409166 -192786266 + L1MC LINE L1 4662 4972 -1174 4 618 573 323 50 50 chr1 4409426 4409726 -192785706 + MLT1A1 LTR MaLR 4 303 -105 4 618 346 286 101 15 chr1 4409949 4410268 -192785164 + L1ME1 LINE L1 5576 5921 -258 4 618 244 288 16 133 chr1 4410277 4410405 -192785027 - MTE2b LTR MaLR -13 366 254 4 618 2115 332 98 56 chr1 4411676 4413096 -192782336 + MTE-int LTR MaLR 31 1510 -70 4 618 34 42 0 0 chr1 4413098 4413146 -192782286 + AT_rich Low_complexity Low_complexity 1 48 0 4 618 534 293 24 54 chr1 4413303 4413469 -192781963 - RSINE1 SINE B4 -2 163 3 4 618 22 0 0 0 chr1 4414312 4414334 -192781098 + AT_rich Low_complexity Low_complexity 1 22 0 4 618 345 135 112 75 chr1 4414334 4414414 -192781018 - ID4 SINE ID 0 83 1 4 618 351 0 0 0 chr1 4416173 4416212 -192779220 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 618 209 239 22 0 chr1 4416244 4416290 -192779142 + L2c LINE L2 3320 3366 -21 4 618 7259 90 21 9 chr1 4417983 4419778 -192775654 + L1_Mus3 LINE L1 4812 6626 -12 4 618 189 0 0 0 chr1 4419813 4419834 -192775598 + (GA)n Simple_repeat Simple_repeat 1 21 0 4 618 255 125 0 0 chr1 4420671 4420711 -192774721 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 618 324 70 0 0 chr1 4420836 4420879 -192774553 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 5 618 359 160 0 13 chr1 4421302 4421378 -192774054 + GA-rich Low_complexity Low_complexity 2 76 0 5 618 2812 106 50 0 chr1 4421748 4422209 -192773223 - L1_Mm LINE L1 -588 5295 4812 5 618 662 301 15 70 chr1 4423238 4423438 -192771994 + B3A SINE B2 9 197 -1 5 618 300 297 76 41 chr1 4424058 4424230 -192771202 - L1MEe LINE L1 -3984 870 693 5 618 595 268 96 35 chr1 4424236 4424433 -192770999 + B3 SINE B2 2 210 -6 5 618 30096 76 5 7 chr1 4425629 4430513 -192764919 + L1Md_F LINE L1 614 5463 -420 5 618 32043 77 14 16 chr1 4430511 4435804 -192759628 + L1Md_F2 LINE L1 307 5586 -297 5 618 7623 62 9 4 chr1 4435804 4436793 -192758639 + L1Md_F2 LINE L1 5587 6580 -2 5 618 312 232 62 10 chr1 4436793 4436889 -192758543 + L1MDa LINE L1 2548 2648 -3985 5 618 294 303 87 39 chr1 4437101 4437204 -192758228 + B1F SINE Alu 22 129 -20 5 618 213 254 118 15 chr1 4437237 4437305 -192758127 + ID4 SINE ID 9 83 0 5 618 24 32 0 0 chr1 4437305 4437336 -192758096 + AT_rich Low_complexity Low_complexity 1 31 0 5 618 550 211 40 33 chr1 4437489 4437719 -192757713 - Lx5 LINE L1 -1375 6085 5853 5 618 1919 163 22 11 chr1 4437731 4438098 -192757334 + L1_Mur2 LINE L1 4701 5071 -806 5 618 1513 205 146 9 chr1 4438098 4438551 -192756881 + ORR1C1-int LTR MaLR 381 895 -614 5 618 910 157 6 12 chr1 4438535 4438696 -192756736 + ORR1C1-int LTR MaLR 1211 1370 0 5 618 2076 154 41 27 chr1 4438703 4439070 -192756362 + ORR1C1 LTR MaLR 7 378 0 5 618 522 0 0 0 chr1 4439097 4439155 -192756277 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 5 618 377 242 0 10 chr1 4439444 4439540 -192755892 + L1MA7 LINE L1 5333 5427 -751 5 618 1612 225 204 0 chr1 4439539 4440029 -192755403 + Lx9 LINE L1 7028 7617 -27 5 618 367 209 60 12 chr1 4440038 4440177 -192755255 + L1MA7 LINE L1 5538 5674 -509 5 618 564 15 0 0 chr1 4440210 4440275 -192755157 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 5 618 450 304 53 26 chr1 4440376 4440640 -192754792 + L1MA7 LINE L1 6004 6274 -17 5 618 333 325 25 16 chr1 4440674 4440796 -192754636 + L1M5 LINE L1 5459 5581 -592 5 618 2203 176 83 123 chr1 4440799 4441290 -192754142 + RLTR20B2 LTR ERVK 1 469 -91 5 618 477 0 0 0 chr1 4441290 4441343 -192754089 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 618 2203 176 83 123 chr1 4441343 4441427 -192754005 + RLTR20B2 LTR ERVK 470 553 -7 5 618 727 179 22 15 chr1 4441501 4441637 -192753795 - B1_Mus1 SINE Alu -1 147 11 5 618 296 278 61 65 chr1 4441660 4441937 -192753495 + L1M5 LINE L1 5587 5862 -317 5 618 408 264 120 0 chr1 4442367 4442492 -192752940 - B1F SINE Alu -8 141 2 5 618 381 331 78 0 chr1 4444775 4444941 -192750491 + ORR1D2 LTR MaLR 5 183 -187 5 618 469 8 131 0 chr1 4444954 4445084 -192750348 + (CCTG)n Simple_repeat Simple_repeat 1 147 0 5 618 639 164 0 0 chr1 4445148 4445300 -192750132 + (TG)n Simple_repeat Simple_repeat 1 152 0 5 618 687 284 45 29 chr1 4445300 4445546 -192749886 - MER2 DNA MER2_type -2 343 94 5 618 279 303 26 0 chr1 4445832 4445908 -192749524 + ID2 SINE ID 3 80 -3 5 618 263 220 0 0 chr1 4446158 4446208 -192749224 + ID4 SINE ID 2 51 -32 5 618 329 141 15 15 chr1 4447849 4447914 -192747518 + PB1D10 SINE Alu 49 113 -4 5 618 6216 205 47 7 chr1 4448098 4449367 -192746065 + Lx9 LINE L1 6318 7637 -7 5 618 1063 143 102 10 chr1 4450399 4450604 -192744828 + ORR1B1 LTR MaLR 1 224 -170 5 618 394 273 141 0 chr1 4450607 4450728 -192744704 - ORR1D1 LTR MaLR -75 303 166 5 618 681 86 21 74 chr1 4450771 4450960 -192744472 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 5 618 840 195 11 17 chr1 4450969 4450991 -192744441 - ORR1D1 LTR MaLR -194 180 161 5 618 270 0 0 0 chr1 4450991 4451021 -192744411 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 5 618 840 195 11 17 chr1 4451021 4451175 -192744257 - ORR1D1 LTR MaLR -214 160 5 5 618 1229 49 0 0 chr1 4451274 4451417 -192744015 + B1_Mus1 SINE Alu 1 143 -5 5 618 789 90 0 0 chr1 4451419 4451530 -192743902 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 618 227 103 0 25 chr1 4451552 4451592 -192743840 + (GGGAA)n Simple_repeat Simple_repeat 3 41 0 5 618 253 308 0 0 chr1 4451646 4451711 -192743721 + ID4_ SINE ID 2 66 -17 5 618 417 20 0 0 chr1 4451717 4451767 -192743665 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 618 243 0 0 0 chr1 4452301 4452328 -192743104 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 618 247 339 0 0 chr1 4452624 4452686 -192742746 + PB1 SINE Alu 2 63 -64 5 618 326 270 0 0 chr1 4453224 4453298 -192742134 + PB1D7 SINE Alu 42 115 -5 5 618 267 255 79 73 chr1 4453604 4453706 -192741726 + L1ME1 LINE L1 4116 4214 -1932 5 618 1988 176 56 3 chr1 4453706 4454065 -192741367 + ORR1C1 LTR MaLR 1 378 0 5 618 267 235 223 53 chr1 4454065 4454294 -192741138 + L1ME1 LINE L1 4215 4503 -1643 5 618 700 212 16 32 chr1 4454357 4454542 -192740890 + L1VL2 LINE L1 99 280 -6055 5 618 5175 85 7 32 chr1 4454557 4455314 -192740118 + L1_Mus3 LINE L1 5895 6632 -6 5 618 863 277 19 5 chr1 4455412 4455619 -192739813 - B3 SINE B2 -3 213 4 5 618 457 294 135 24 chr1 4455757 4456178 -192739254 + L1ME1 LINE L1 4808 5275 -871 5 77 619 322 109 45 chr1 4456212 4456958 -192738474 + L1ME1 LINE L1 5319 6114 -65 5 619 228 86 0 0 chr1 4457917 4457952 -192737480 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 619 420 295 34 63 chr1 4458338 4458526 -192736906 + L1MDa LINE L1 167 353 -6280 5 619 3278 56 2 2 chr1 4458526 4458922 -192736510 + MTA_Mm LTR MaLR 1 396 0 5 619 420 295 34 63 chr1 4458922 4458939 -192736493 + L1MDa LINE L1 354 366 -6267 5 619 294 309 22 67 chr1 4459141 4459276 -192736156 + L1MDa LINE L1 744 872 -5761 5 619 207 162 0 0 chr1 4459306 4459343 -192736089 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 619 267 157 176 0 chr1 4459515 4459566 -192735866 - L1_Mus4 LINE L1 -990 5646 5587 5 619 312 339 17 52 chr1 4459566 4459681 -192735751 + B3 SINE B2 81 191 -25 5 619 3248 53 5 0 chr1 4459693 4460087 -192735345 - MTA_Mm LTR MaLR 0 396 1 5 619 648 219 82 41 chr1 4462525 4462696 -192732736 - B3 SINE B2 -38 178 1 5 619 3017 276 104 42 chr1 4462696 4463854 -192731578 - Lx8 LINE L1 -117 7356 6127 5 619 335 248 53 35 chr1 4464855 4464968 -192730464 - PB1D10 SINE Alu 0 117 3 5 619 267 103 29 67 chr1 4465452 4465556 -192729876 + (TTGG)n Simple_repeat Simple_repeat 1 100 0 5 619 868 166 7 14 chr1 4465556 4465703 -192729729 - B1_Mus1 SINE Alu -2 146 1 5 619 218 289 0 0 chr1 4465972 4466024 -192729408 + ID4_ SINE ID 2 53 -30 5 619 216 143 0 100 chr1 4466151 4466221 -192729211 + T-rich Low_complexity Low_complexity 1 63 0 5 619 1272 89 16 53 chr1 4466234 4466424 -192729008 + B2_Mm2 SINE B2 3 185 -10 5 619 387 0 0 0 chr1 4466425 4466468 -192728964 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 5 619 563 108 11 0 chr1 4466826 4466919 -192728513 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 619 2156 147 134 7 chr1 4467294 4467712 -192727720 + Lx2B LINE L1 6505 6975 -25 5 619 192 97 0 0 chr1 4467712 4467743 -192727689 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 619 761 177 0 34 chr1 4467778 4467924 -192727508 + B1_Mur3 SINE Alu 9 149 0 5 619 1323 64 46 6 chr1 4468444 4468617 -192726815 - B2_Mm2 SINE B2 -14 181 2 5 619 276 241 12 24 chr1 4469508 4469593 -192725839 + PB1D10 SINE Alu 14 97 -20 5 619 360 0 0 0 chr1 4469597 4469637 -192725795 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 619 1473 55 0 0 chr1 4470791 4471098 -192724334 + (TG)n Simple_repeat Simple_repeat 1 307 0 5 619 284 185 0 15 chr1 4472038 4472104 -192723328 - B1_Mm SINE Alu 0 147 83 5 619 192 40 0 0 chr1 4472155 4472180 -192723252 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 5 619 713 205 93 89 chr1 4472478 4472692 -192722740 + B3 SINE B2 2 216 0 5 619 254 280 13 0 chr1 4473199 4473274 -192722158 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 619 472 308 43 49 chr1 4473283 4473447 -192721985 - RSINE1 SINE B4 0 165 3 5 619 19131 8 0 0 chr1 4473948 4476070 -192719362 + L1Md_A LINE L1 3465 5586 -297 5 619 8951 15 0 1 chr1 4476070 4477067 -192718365 + L1Md_A LINE L1 5587 6582 0 5 619 232 299 15 0 chr1 4477668 4477735 -192717697 + ID4 SINE ID 2 69 -14 5 619 1332 180 97 168 chr1 4477842 4478295 -192717137 + MTC LTR MaLR 1 421 0 5 619 660 195 0 0 chr1 4480056 4480169 -192715263 + B1_Mur3 SINE Alu 1 113 -36 5 619 207 0 0 0 chr1 4480171 4480194 -192715238 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 619 22 35 0 0 chr1 4480308 4480337 -192715095 + AT_rich Low_complexity Low_complexity 1 29 0 5 619 511 209 28 9 chr1 4484939 4485045 -192710387 + ID_B1 SINE B4 104 211 -13 5 619 710 78 0 10 chr1 4485046 4485149 -192710283 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 5 619 21 0 0 0 chr1 4485909 4485930 -192709502 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 255 333 45 45 chr1 4488179 4488333 -192707099 - MamSINE1 SINE tRNA -59 231 78 5 619 182 189 132 0 chr1 4488943 4488996 -192706436 - MIRc SINE MIR -38 230 171 5 619 716 207 14 7 chr1 4489326 4489472 -192705960 + B1_Mus1 SINE Alu 2 148 0 5 619 185 364 101 37 chr1 4489980 4490197 -192705235 + MIR SINE MIR 22 252 -10 5 619 932 216 29 29 chr1 4490474 4490679 -192704753 + B3 SINE B2 4 208 -8 5 619 38 22 0 0 chr1 4491301 4491346 -192704086 + AT_rich Low_complexity Low_complexity 1 45 0 5 619 1449 186 107 0 chr1 4492230 4492547 -192702885 - MTD LTR MaLR -14 405 55 5 619 288 308 150 27 chr1 4492755 4492975 -192702457 - L1MC4 LINE L1 -566 7476 7230 5 619 432 308 120 31 chr1 4493061 4493419 -192702013 - L1MC4 LINE L1 -954 7088 6699 5 619 303 305 48 0 chr1 4493436 4493541 -192701891 + Tigger7 DNA MER2_type 9 118 -2373 5 619 401 265 45 50 chr1 4493538 4493717 -192701715 + Tigger7 DNA MER2_type 2303 2480 -11 5 619 243 276 7 141 chr1 4494119 4494254 -192701178 + RSINE1 SINE B4 13 129 -36 5 619 211 262 81 35 chr1 4494328 4494415 -192701017 - PB1D10 SINE Alu 0 117 27 5 619 25 0 0 0 chr1 4494448 4494473 -192700959 + AT_rich Low_complexity Low_complexity 1 25 0 5 619 290 302 0 0 chr1 4494725 4494788 -192700644 + ID4_ SINE ID 15 77 -6 5 619 183 80 0 0 chr1 4494790 4494815 -192700617 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 619 1377 162 8 0 chr1 4495292 4495532 -192699900 + MTC LTR MaLR 180 421 0 6 619 276 30 0 0 chr1 4495852 4495885 -192699547 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 619 399 271 0 0 chr1 4499185 4499377 -192696055 + (TG)n Simple_repeat Simple_repeat 1 192 0 6 619 552 189 0 0 chr1 4499403 4499546 -192695886 + (TG)n Simple_repeat Simple_repeat 2 144 0 6 619 598 176 4 27 chr1 4499596 4499868 -192695564 + (TG)n Simple_repeat Simple_repeat 1 265 0 6 619 220 196 0 0 chr1 4499886 4499932 -192695500 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 619 541 286 11 73 chr1 4500298 4500475 -192694957 - B4A SINE B4 0 292 127 1 619 246 280 0 51 chr1 4500484 4500563 -192694869 - B3A SINE B2 -119 79 5 2 619 300 111 0 0 chr1 4500578 4500623 -192694809 + (GGA)n Simple_repeat Simple_repeat 3 47 0 3 619 539 221 74 25 chr1 4500716 4500911 -192694521 - B3 SINE B2 -4 191 3 4 619 298 234 168 0 chr1 4501283 4501420 -192694012 + L1MB7 LINE L1 6025 6184 0 5 619 231 60 19 39 chr1 4502384 4502436 -192692996 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 619 1103 112 11 0 chr1 4502910 4503088 -192692344 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 619 756 227 0 0 chr1 4503121 4503253 -192692179 - B1_Mus2 SINE Alu -6 141 10 8 619 591 74 0 0 chr1 4503956 4504037 -192691395 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 619 211 215 12 37 chr1 4504953 4505035 -192690397 + T-rich Low_complexity Low_complexity 1 80 0 1 619 625 139 0 0 chr1 4505036 4505137 -192690295 - B1_Mus2 SINE Alu 0 147 47 1 619 859 167 123 0 chr1 4505158 4505320 -192690112 - B3 SINE B2 -24 192 11 1 619 612 318 115 48 chr1 4505320 4505540 -192689892 - L1MB8 LINE L1 -28 6150 5888 1 619 432 0 0 0 chr1 4505540 4505588 -192689844 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 619 612 318 115 48 chr1 4505588 4505994 -192689438 - L1MB8 LINE L1 -291 5887 5483 1 619 333 0 0 0 chr1 4506005 4506042 -192689390 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1 619 298 200 390 0 chr1 4506047 4506142 -192689290 - B1_Mur2 SINE Alu -17 132 1 1 619 241 295 26 0 chr1 4506310 4506388 -192689044 - L1MB8 LINE L1 -1154 4992 4913 1 619 205 186 0 0 chr1 4506539 4506582 -192688850 + A-rich Low_complexity Low_complexity 1 43 0 1 619 801 59 220 0 chr1 4507155 4507273 -192688159 + B1_Mm SINE Alu 1 144 -3 1 619 432 0 0 0 chr1 4507274 4507322 -192688110 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1 619 252 0 0 0 chr1 4507544 4507572 -192687860 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 619 515 244 140 0 chr1 4509326 4509519 -192685913 - ID_B1 SINE B4 -1 223 4 2 619 322 208 112 20 chr1 4509631 4509729 -192685703 - PB1D10 SINE Alu -9 108 2 2 619 22 0 0 0 chr1 4511206 4511228 -192684204 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 1111 189 48 10 chr1 4512463 4512671 -192682761 - B3 SINE B2 0 216 1 2 619 4081 56 0 36 chr1 4513685 4514218 -192681214 - L1Md_F2 LINE L1 -12 6570 6057 2 619 2330 64 3 0 chr1 4514218 4514515 -192680917 + L1_Mm LINE L1 4720 5017 -866 2 619 413 191 0 0 chr1 4517006 4517086 -192678346 - ID4 SINE ID -58 94 15 2 619 297 71 0 0 chr1 4517201 4517218 -192678214 + (TA)n Simple_repeat Simple_repeat 2 18 0 2 619 444 82 0 0 chr1 4517218 4517279 -192678153 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 619 297 71 0 0 chr1 4517279 4517303 -192678129 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 619 530 40 13 0 chr1 4518030 4518105 -192677327 - L1Md_F2 LINE L1 0 6582 6507 3 619 784 202 51 0 chr1 4518114 4518292 -192677140 + MTE2b LTR MaLR 193 379 0 3 619 350 293 14 14 chr1 4518317 4518459 -192676973 + L1MB7 LINE L1 4600 4741 -1405 3 619 732 302 5 0 chr1 4518622 4518814 -192676618 + B4A SINE B4 78 270 -22 3 619 447 52 0 0 chr1 4518828 4518886 -192676546 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 619 1036 263 152 42 chr1 4518890 4519097 -192676335 + L1MB7 LINE L1 5338 5534 -650 3 619 984 9 0 0 chr1 4519097 4519204 -192676228 + U6 snRNA snRNA 1 107 0 3 619 6260 29 0 0 chr1 4519204 4519923 -192675509 + L1Md_T LINE L1 5863 6581 -1 3 619 1036 263 152 42 chr1 4519923 4520436 -192674996 + L1MB7 LINE L1 5535 6138 -46 3 619 347 98 16 0 chr1 4520454 4520515 -192674917 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 619 2305 153 57 61 chr1 4520528 4520986 -192674446 + RMER1B Other Other 587 1042 -24 3 619 1560 206 71 8 chr1 4520991 4521015 -192674417 + MTC LTR MaLR 48 72 -349 4 619 807 40 0 0 chr1 4521015 4521114 -192674318 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 4 619 1560 206 71 8 chr1 4521114 4521441 -192673991 + MTC LTR MaLR 73 421 0 4 619 233 216 20 0 chr1 4522017 4522068 -192673364 - MLT1K LTR MaLR -233 362 311 4 619 306 0 0 0 chr1 4524504 4524538 -192670894 + (A)n Simple_repeat Simple_repeat 1 34 0 4 619 34 72 0 0 chr1 4524770 4524839 -192670593 + AT_rich Low_complexity Low_complexity 1 69 0 4 619 279 0 0 0 chr1 4526667 4526698 -192668734 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 619 305 286 28 7 chr1 4528715 4528856 -192666576 - Charlie1a DNA MER1_type -24 1431 1288 4 619 296 295 101 67 chr1 4528865 4529048 -192666384 + B3 SINE B2 6 197 -1 4 619 371 270 115 74 chr1 4529126 4529274 -192666158 + B4A SINE B4 104 257 -35 4 619 537 186 9 9 chr1 4529469 4529577 -192665855 + B1_Mur1 SINE Alu 34 142 -7 4 619 216 0 0 0 chr1 4529577 4529601 -192665831 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 619 609 263 94 5 chr1 4529986 4530177 -192665255 - ID_B1 SINE B4 -15 209 2 5 619 703 264 142 31 chr1 4530469 4530527 -192664905 + L1ME1 LINE L1 5530 5581 -598 5 619 729 249 53 5 chr1 4530527 4530733 -192664699 - B3 SINE B2 0 216 1 5 619 703 264 142 31 chr1 4530733 4531033 -192664399 + L1ME1 LINE L1 5582 5928 -251 5 619 581 232 13 47 chr1 4531059 4531208 -192664224 + Lx8 LINE L1 6277 6420 -1053 5 619 1318 304 16 8 chr1 4531209 4531594 -192663838 + Lx8 LINE L1 6523 6910 -563 5 619 871 93 47 0 chr1 4531606 4531735 -192663697 - B1_Mus1 SINE Alu 0 148 14 5 619 750 325 115 20 chr1 4531741 4532131 -192663301 + Lx8 LINE L1 6908 7334 -139 5 619 315 281 82 27 chr1 4532195 4532378 -192663054 - L1M4 LINE L1 -1530 4616 4424 5 619 27 0 0 0 chr1 4532674 4532701 -192662731 + AT_rich Low_complexity Low_complexity 1 27 0 5 619 222 333 26 0 chr1 4533030 4533108 -192662324 + ID4_ SINE ID 2 81 -2 5 619 241 256 39 23 chr1 4533108 4533236 -192662196 + Charlie7a DNA MER1_type 64 193 -79 5 619 281 93 0 18 chr1 4533292 4533347 -192662085 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 619 442 272 93 22 chr1 4533373 4533512 -192661920 - RSINE1 SINE B4 -14 151 3 6 619 261 0 0 0 chr1 4534644 4534673 -192660759 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 619 451 233 77 8 chr1 4534783 4534900 -192660532 - RSINE1 SINE B4 -39 126 2 6 619 590 306 98 33 chr1 4535582 4535856 -192659576 + B4 SINE B4 1 292 0 6 619 646 44 22 0 chr1 4536890 4536980 -192658452 + (TTCTC)n Simple_repeat Simple_repeat 4 95 0 6 619 881 156 28 0 chr1 4536980 4537121 -192658311 - B1_Mur4 SINE Alu -1 149 5 6 619 461 286 158 30 chr1 4539261 4539589 -192655843 - ORR1D2 LTR MaLR 0 370 1 6 619 50 31 0 0 chr1 4540732 4540796 -192654636 + AT_rich Low_complexity Low_complexity 1 64 0 6 619 552 143 28 14 chr1 4540809 4540951 -192654481 + (TA)n Simple_repeat Simple_repeat 2 145 0 6 619 608 244 68 68 chr1 4540975 4541182 -192654250 + B3 SINE B2 1 207 -9 7 619 3871 173 9 7 chr1 4541182 4541854 -192653578 + Lx5 LINE L1 6369 7041 -9 7 619 587 272 15 0 chr1 4542004 4542140 -192653292 - B1_Mur1 SINE Alu -9 140 3 7 619 437 200 0 12 chr1 4542456 4542542 -192652890 + PB1D9 SINE Alu 36 120 0 7 619 210 292 33 22 chr1 4542570 4542661 -192652771 + (TATG)n Simple_repeat Simple_repeat 4 95 0 7 619 364 292 10 0 chr1 4542681 4542777 -192652655 - B1F1 SINE Alu -1 148 52 7 619 2181 169 111 28 chr1 4542777 4543260 -192652172 + RMER19C LTR ERVK 1 611 0 7 619 503 285 29 14 chr1 4544282 4544421 -192651011 - RSINE1 SINE B4 -17 148 8 7 619 267 228 25 12 chr1 4544430 4544510 -192650922 + L1ME3A LINE L1 6041 6121 -52 7 619 24 67 0 0 chr1 4544876 4544921 -192650511 + AT_rich Low_complexity Low_complexity 1 45 0 7 619 7070 132 12 8 chr1 4545130 4546595 -192648837 - Lx LINE L1 0 6654 5184 8 619 752 174 58 0 chr1 4546664 4546802 -192648630 - B1_Mur2 SINE Alu -3 146 1 8 619 426 121 0 0 chr1 4546994 4547060 -192648372 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 619 2336 122 39 41 chr1 4547068 4547536 -192647896 - IAPLTR2_Mm LTR ERVK -8 467 1 8 619 8751 41 8 5 chr1 4547536 4548569 -192646863 - IAPEz-int LTR ERVK 0 6481 5446 8 619 1780 10 0 0 chr1 4548568 4548761 -192646671 - IAPEz-int LTR ERVK -2764 3717 3525 8 619 953 80 24 0 chr1 4548761 4548886 -192646546 - IAPEz-int LTR ERVK -2770 4910 4783 8 619 1835 119 4 4 chr1 4548881 4549143 -192646289 - IAPEz-int LTR ERVK -5183 2497 2236 8 619 454 66 0 32 chr1 4549132 4549195 -192646237 - IAPEz-int LTR ERVK -5062 1419 1359 8 619 3711 57 6 0 chr1 4549195 4549678 -192645754 - IAPEz-int LTR ERVK -5819 662 138 8 619 36170 35 1 0 chr1 4549678 4556082 -192639350 + L1Md_T LINE L1 1 5589 -297 8 619 9178 5 0 0 chr1 4556082 4557108 -192638324 + L1Md_T LINE L1 5590 6585 0 8 619 1296 7 7 0 chr1 4557108 4557255 -192638177 - IAPEz-int LTR ERVK -6333 148 1 8 619 2336 122 39 41 chr1 4557256 4557724 -192637708 - IAPLTR2_Mm LTR ERVK -8 467 1 8 619 634 217 72 7 chr1 4557724 4557877 -192637555 - B3 SINE B2 -16 200 38 8 619 611 229 43 37 chr1 4557945 4558108 -192637324 - B3A SINE B2 -1 197 34 8 619 263 179 75 37 chr1 4558113 4558198 -192637234 - MTEa LTR MaLR -57 322 237 8 619 485 259 104 0 chr1 4558531 4558666 -192636766 - B1_Mur2 SINE Alu 0 149 1 8 619 529 292 92 40 chr1 4558885 4559210 -192636222 - L1MA6 LINE L1 -44 6256 5915 9 619 386 251 89 35 chr1 4559286 4559413 -192636019 - L1MA6 LINE L1 -404 5896 5760 9 619 1605 40 5 0 chr1 4559413 4559614 -192635818 + L1Md_F2 LINE L1 6379 6580 -2 9 619 386 251 89 35 chr1 4559614 4559655 -192635777 - L1MA6 LINE L1 -541 5759 5719 9 619 228 260 0 0 chr1 4559667 4559717 -192635715 + ID2 SINE ID 34 83 0 9 619 442 216 190 27 chr1 4559932 4560227 -192635205 - L1M1 LINE L1 -706 5597 5255 9 619 323 224 45 0 chr1 4560643 4560710 -192634722 + B1_Mus1 SINE Alu 3 72 -76 9 619 267 122 0 0 chr1 4561976 4562025 -192633407 + (TCCCC)n Simple_repeat Simple_repeat 2 50 0 9 619 27 29 0 0 chr1 4562520 4562554 -192632878 + AT_rich Low_complexity Low_complexity 1 34 0 9 619 947 132 217 6 chr1 4562839 4563014 -192632418 - B3 SINE B2 0 216 5 9 619 317 219 0 15 chr1 4563096 4563161 -192632271 - ID4_ SINE ID -11 72 9 9 619 491 260 6 72 chr1 4563719 4563885 -192631547 + L1MA5 LINE L1 6135 6289 -11 9 619 468 51 0 0 chr1 4563887 4563946 -192631486 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 619 180 273 0 0 chr1 4564263 4564307 -192631125 + L3 LINE CR1 3254 3297 -1192 1 619 27 62 0 0 chr1 4564682 4564730 -192630702 + AT_rich Low_complexity Low_complexity 1 48 0 1 619 252 224 26 84 chr1 4564730 4564983 -192630449 + (TATAA)n Simple_repeat Simple_repeat 1 238 0 1 619 321 273 81 29 chr1 4566519 4566655 -192628777 + MIRb SINE MIR 34 176 -92 1 619 280 211 22 3 chr1 4566902 4566989 -192628443 + L1M4 LINE L1 5567 5655 -534 1 619 1020 252 72 4 chr1 4567005 4567268 -192628164 - MTD LTR MaLR -16 403 123 1 619 253 247 27 0 chr1 4567320 4567393 -192628039 - L1M4 LINE L1 -342 5842 5768 1 619 227 319 14 27 chr1 4567606 4567680 -192627752 - ID4_ SINE ID -2 81 9 1 619 222 91 0 0 chr1 4568477 4568510 -192626922 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 1 619 299 326 106 103 chr1 4569011 4569284 -192626148 + B4 SINE B4 3 276 -16 1 619 284 120 0 20 chr1 4569336 4569387 -192626045 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 619 1531 59 5 0 chr1 4570769 4570956 -192624476 - B2_Mm1a SINE B2 -5 188 1 1 619 426 39 0 0 chr1 4571206 4571258 -192624174 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 619 541 281 68 0 chr1 4571260 4571406 -192624026 - B3A SINE B2 -41 157 2 1 619 428 300 35 100 chr1 4571622 4571733 -192623699 - B4A SINE B4 0 292 92 1 619 652 195 0 0 chr1 4571733 4571846 -192623586 - B1_Mur2 SINE Alu -36 113 1 1 619 536 301 44 35 chr1 4571851 4572054 -192623378 - B3 SINE B2 0 216 12 1 619 804 271 86 68 chr1 4572197 4572696 -192622736 - RMER13A LTR ERVK -227 681 1 1 619 1292 220 31 3 chr1 4572725 4573012 -192622420 - MTD LTR MaLR -123 296 2 1 619 279 296 12 0 chr1 4573254 4573335 -192622097 + ID4 SINE ID 2 83 0 1 619 693 292 92 59 chr1 4574128 4574485 -192620947 + Lx8 LINE L1 5384 5752 -95 1 619 5204 160 26 16 chr1 4574754 4575710 -192619722 - L1_Mur3 LINE L1 -368 5512 4547 1 619 428 261 29 15 chr1 4575709 4575845 -192619587 + Lx6 LINE L1 7295 7432 -28 1 619 555 139 10 19 chr1 4575830 4575933 -192619499 + L1_Mur3 LINE L1 4447 4548 -1332 1 619 487 269 180 5 chr1 4576018 4576212 -192619220 + Lx8 LINE L1 6224 6451 -1022 1 619 838 324 93 42 chr1 4576221 4576746 -192618686 + Lx8 LINE L1 6922 7473 0 1 619 6555 229 30 37 chr1 4576921 4577101 -192618331 - Lx7 LINE L1 0 7696 7419 1 619 345 47 0 0 chr1 4577101 4577144 -192618288 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 619 6555 211 42 15 chr1 4577144 4578459 -192616973 - Lx7 LINE L1 -278 7418 6085 1 619 2147 116 0 0 chr1 4578466 4578785 -192616647 - ORR1A2 LTR MaLR -8 319 1 1 619 6075 182 94 21 chr1 4578787 4580286 -192615146 - Lx7 LINE L1 -1613 6083 4481 1 619 653 222 9 119 chr1 4580280 4580400 -192615032 - Lx7 LINE L1 -6724 1004 897 1 619 3599 30 16 7 chr1 4580400 4580835 -192614597 - L1Md_F3 LINE L1 0 6584 6146 1 619 653 222 9 119 chr1 4580835 4580924 -192614508 - Lx7 LINE L1 -6832 896 818 1 619 290 369 0 0 chr1 4581983 4582105 -192613327 + RodERV21-int LTR ERV1 751 872 -4119 1 619 5626 275 18 24 chr1 4582527 4583989 -192611443 + RodERV21-int LTR ERV1 1270 2722 -2269 1 619 534 317 38 64 chr1 4584099 4584571 -192610861 + RodERV21-int LTR ERV1 3615 4074 -3017 1 619 207 0 0 0 chr1 4584970 4584993 -192610439 + (A)n Simple_repeat Simple_repeat 1 23 0 1 619 189 0 0 0 chr1 4585070 4585091 -192610341 + (A)n Simple_repeat Simple_repeat 1 21 0 1 619 309 302 56 59 chr1 4586048 4586406 -192609026 + RodERV21-int LTR ERV1 4760 4986 -2570 1 77 1438 329 53 62 chr1 4586463 4587546 -192607886 + RodERV21-int LTR ERV1 2695 3767 -1224 1 620 2438 288 136 23 chr1 4589684 4589901 -192605531 - Lx8 LINE L1 -5 7468 7223 1 620 2804 217 18 12 chr1 4589901 4590474 -192604958 - Lx5 LINE L1 0 7050 6475 1 620 2438 288 136 23 chr1 4590474 4591261 -192604171 - Lx8 LINE L1 -251 7222 6350 1 620 696 12 0 0 chr1 4591297 4591378 -192604054 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 620 276 296 25 0 chr1 4591397 4591478 -192603954 + ID4_ SINE ID 1 83 0 1 620 554 233 69 42 chr1 4591490 4591689 -192603743 - L1_Rod LINE L1 -161 5719 5473 1 620 522 0 0 0 chr1 4592908 4592966 -192602466 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 620 449 315 42 42 chr1 4593007 4593219 -192602213 - B4 SINE B4 -1 291 80 1 620 705 261 44 6 chr1 4594436 4594617 -192600815 + B3 SINE B2 29 216 0 1 620 348 230 35 0 chr1 4594624 4594711 -192600721 + L1M4 LINE L1 5511 5600 -574 1 620 704 90 0 0 chr1 4594770 4594870 -192600562 + ORR1A3 LTR MaLR 227 326 0 1 620 469 320 80 4 chr1 4594894 4595120 -192600312 + L1MB2 LINE L1 5821 6063 -108 1 620 450 316 89 16 chr1 4595116 4595431 -192600001 + L1MA6 LINE L1 5954 6291 -9 1 620 1133 88 0 0 chr1 4595454 4595601 -192599831 + B1_Mus2 SINE Alu 1 147 0 1 620 269 82 0 20 chr1 4595601 4595651 -192599781 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 1 620 180 111 0 0 chr1 4595817 4595844 -192599588 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 620 259 206 68 0 chr1 4595867 4595940 -192599492 + Lx6 LINE L1 7379 7456 -4 1 620 1955 9 0 0 chr1 4596491 4596709 -192598723 - L1_Mm LINE L1 -3429 2454 2237 1 620 4634 12 0 0 chr1 4596708 4597223 -192598209 + L1Md_T LINE L1 5072 5586 -297 1 620 8580 30 1 1 chr1 4597223 4598219 -192597213 + L1Md_T LINE L1 5587 6582 0 1 620 348 17 0 78 chr1 4598590 4598654 -192596778 + (CAAAAA)n Simple_repeat Simple_repeat 4 62 0 1 620 203 185 55 18 chr1 4599365 4599420 -192596012 + CT-rich Low_complexity Low_complexity 2 58 0 1 620 523 184 277 0 chr1 4599783 4599947 -192595485 + B3 SINE B2 6 214 -2 1 620 724 115 10 0 chr1 4600082 4600178 -192595254 + Lx4A LINE L1 6724 6820 -238 1 620 1037 55 0 52 chr1 4600192 4600346 -192595086 - B1_Mus2 SINE Alu 0 147 2 1 620 528 16 0 0 chr1 4601495 4601556 -192593876 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 620 2009 150 75 5 chr1 4601868 4602256 -192593176 - RLTR9F LTR ERVK 0 415 1 1 620 1182 154 54 5 chr1 4602587 4602808 -192592624 + Lx4A LINE L1 6826 7057 -1 1 620 357 306 19 75 chr1 4602935 4603094 -192592338 - RSINE1 SINE B4 -13 152 3 1 620 24 0 0 0 chr1 4603425 4603449 -192591983 + AT_rich Low_complexity Low_complexity 1 24 0 1 620 192 77 0 0 chr1 4604640 4604666 -192590766 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 1 620 217 278 28 0 chr1 4604672 4604744 -192590688 - PB1D9 SINE Alu -20 100 27 1 620 21 0 0 0 chr1 4604783 4604804 -192590628 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 378 276 29 41 chr1 4606319 4606489 -192588943 + RMER17C LTR ERVK 186 353 -57 1 620 22 56 0 0 chr1 4608281 4608317 -192587115 + AT_rich Low_complexity Low_complexity 1 36 0 1 620 228 258 95 0 chr1 4608460 4608547 -192586885 - ID2 SINE ID -39 113 21 1 620 1779 215 0 3 chr1 4609195 4609545 -192585887 - ORR1C1 LTR MaLR -29 349 1 1 620 5493 219 29 56 chr1 4609548 4609941 -192585491 - ORR1C1-int LTR MaLR -3 1367 994 1 620 543 128 0 0 chr1 4609941 4610027 -192585405 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 1 620 5493 219 29 56 chr1 4610027 4610649 -192584783 - ORR1C1-int LTR MaLR -377 993 375 1 620 363 23 0 0 chr1 4610649 4610693 -192584739 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 620 5493 219 29 56 chr1 4610693 4611081 -192584351 - ORR1C1-int LTR MaLR -996 374 2 1 620 1897 192 8 3 chr1 4611081 4611446 -192583986 - ORR1C1 LTR MaLR 0 378 12 1 620 598 120 32 71 chr1 4611447 4611573 -192583859 - Lx LINE L1 0 6654 6534 1 620 1152 276 89 41 chr1 4611603 4612144 -192583288 + L1MB3 LINE L1 5613 6179 -4 1 620 584 217 0 17 chr1 4614152 4614269 -192581163 + B1_Mur2 SINE Alu 34 148 -1 1 620 567 243 0 14 chr1 4614793 4614935 -192580497 + B1_Mur3 SINE Alu 1 140 -9 1 620 613 215 131 0 chr1 4615141 4615271 -192580161 - B1_Mur2 SINE Alu -2 147 1 1 620 251 252 185 100 chr1 4615305 4615416 -192580016 + Lx9 LINE L1 7357 7490 -154 1 620 450 0 0 0 chr1 4615416 4615466 -192579966 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 620 251 252 185 100 chr1 4615466 4615614 -192579818 + Lx9 LINE L1 7491 7637 -7 1 620 189 195 0 0 chr1 4616232 4616273 -192579159 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 620 662 301 101 17 chr1 4616312 4616549 -192578883 - B4A SINE B4 -12 280 24 1 620 281 176 0 81 chr1 4616568 4616667 -192578765 + T-rich Low_complexity Low_complexity 3 93 0 1 620 735 183 41 34 chr1 4616668 4616815 -192578617 - B1_Mur3 SINE Alu 0 149 2 1 620 468 0 0 0 chr1 4616879 4616931 -192578501 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 620 193 133 16 32 chr1 4616932 4616994 -192578438 + (CAGAGA)n Simple_repeat Simple_repeat 4 64 0 1 620 999 124 46 34 chr1 4618503 4618663 -192576769 + ORR1B2 LTR MaLR 1 166 -201 1 620 821 52 0 9 chr1 4618663 4618779 -192576653 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 620 999 124 46 34 chr1 4618779 4618793 -192576639 + ORR1B2 LTR MaLR 167 177 -190 1 620 528 181 13 77 chr1 4618793 4618949 -192576483 + Lx7 LINE L1 7462 7607 -89 1 620 4542 120 7 78 chr1 4618954 4619804 -192575628 - RMER17D2 LTR ERVK 0 809 20 1 620 1208 256 26 21 chr1 4619862 4620054 -192575378 - RMER17C LTR ERVK -29 381 186 1 620 459 0 0 0 chr1 4620054 4620105 -192575327 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 620 1208 256 26 21 chr1 4620105 4620291 -192575141 - RMER17C LTR ERVK -225 185 2 1 620 417 123 0 0 chr1 4620456 4620521 -192574911 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 620 274 259 56 11 chr1 4620727 4620817 -192574615 + MER82 DNA MER2_type 174 267 -386 1 620 1728 133 52 61 chr1 4620818 4621147 -192574285 + ORR1A4 LTR MaLR 1 326 -3 1 620 258 162 167 56 chr1 4621185 4621257 -192574175 + L1VL1 LINE L1 278 357 -6065 1 620 1168 184 56 138 chr1 4621319 4621747 -192573685 - RLTR9C LTR ERVK 0 393 1 1 620 449 222 23 16 chr1 4621779 4621907 -192573525 + L1_Mus2 LINE L1 675 803 -5813 1 620 28998 102 25 2 chr1 4621914 4627611 -192567821 + L1_Mus2 LINE L1 725 6557 -9 1 620 810 31 0 0 chr1 4627611 4627708 -192567724 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 1 620 465 289 149 21 chr1 4627709 4627903 -192567529 + MER82 DNA MER2_type 253 471 -182 1 620 288 0 0 0 chr1 4627904 4627936 -192567496 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 620 2747 302 78 34 chr1 4628034 4629079 -192566353 + Tigger7 DNA MER2_type 2 1092 -1399 1 620 922 276 37 22 chr1 4629093 4629364 -192566068 + Tigger7 DNA MER2_type 1157 1431 -1060 1 620 1424 248 88 5 chr1 4629391 4629776 -192565656 - MTD LTR MaLR 0 419 3 1 620 263 93 23 0 chr1 4629797 4629840 -192565592 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 620 373 221 95 9 chr1 4629845 4629950 -192565482 - Lx5 LINE L1 -45 7005 6892 1 620 713 251 16 32 chr1 4630622 4630807 -192564625 + B3A SINE B2 1 182 -16 2 620 393 179 0 0 chr1 4630819 4630903 -192564529 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 620 304 267 93 0 chr1 4631629 4631704 -192563728 - B3 SINE B2 -109 107 26 2 620 1999 196 37 50 chr1 4632796 4633232 -192562200 - BGLII_B LTR ERVK -10 431 2 2 620 37 39 0 0 chr1 4634465 4634516 -192560916 + AT_rich Low_complexity Low_complexity 1 51 0 2 620 538 225 27 0 chr1 4636350 4636461 -192558971 - B1_Mur2 SINE Alu -12 137 24 2 620 465 237 21 0 chr1 4636458 4636555 -192558877 + B1_Mur3 SINE Alu 49 147 -2 2 620 548 252 156 32 chr1 4636693 4637072 -192558360 - L1MB3 LINE L1 -137 6043 5618 2 620 227 308 138 86 chr1 4637610 4637784 -192557648 + LTR50 LTR ERVL 485 667 -128 2 620 9687 72 33 28 chr1 4638285 4639788 -192555644 - MusHAL1 LINE L1 -60 2652 1142 2 620 816 214 11 16 chr1 4639788 4639973 -192555459 + RLTR12B LTR ERVK 342 525 -3 2 620 3411 231 43 113 chr1 4639973 4641087 -192554345 + MTD-int LTR MaLR 94 1308 -62 2 620 7610 64 2 0 chr1 4641108 4642418 -192553014 - L1_Mus1 LINE L1 0 6567 5255 2 620 690 224 40 8 chr1 4642418 4642607 -192552825 + MTD-int LTR MaLR 1097 1258 0 2 620 1885 209 52 22 chr1 4642608 4643014 -192552418 + MTD LTR MaLR 2 419 0 2 620 23 33 0 0 chr1 4643071 4643101 -192552331 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 819 100 0 0 chr1 4643183 4643293 -192552139 - B2_Mm2 SINE B2 -85 110 1 2 620 331 325 7 128 chr1 4643294 4643435 -192551997 - ID_B1 SINE B4 0 224 101 2 620 237 245 0 0 chr1 4643600 4643653 -192551779 - B1F SINE Alu -89 60 8 2 620 198 0 0 0 chr1 4643831 4643853 -192551579 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2 620 1762 187 71 3 chr1 4644803 4645157 -192550275 - ORR1C1 LTR MaLR 0 378 1 2 620 1232 274 16 39 chr1 4645396 4645707 -192549725 - MTE2a LTR MaLR 0 379 76 2 620 22 43 0 21 chr1 4646104 4646125 -192549307 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 907 152 14 14 chr1 4646125 4646272 -192549160 + B1_Mur4 SINE Alu 3 149 -1 2 620 22 43 0 21 chr1 4646272 4646297 -192549135 + AT_rich Low_complexity Low_complexity 1 25 0 2 620 275 299 130 0 chr1 4646369 4646446 -192548986 + RSINE1 SINE B4 5 91 -74 2 620 500 242 126 101 chr1 4646463 4646670 -192548762 + B3 SINE B2 5 216 0 2 620 310 272 80 14 chr1 4646769 4646907 -192548525 + L1M5 LINE L1 5293 5439 -725 2 620 21 0 0 0 chr1 4647477 4647498 -192547934 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 22 56 0 0 chr1 4647712 4647748 -192547684 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 13101 87 18 7 chr1 4648073 4650131 -192545301 - MusHAL1 LINE L1 -632 2080 1 2 620 3039 82 2 10 chr1 4650131 4650537 -192544895 - RLTR9D LTR ERVK 0 403 1 2 620 4164 86 128 4 chr1 4650537 4651072 -192544360 - L1VL2 LINE L1 -5432 903 287 2 620 227 292 51 42 chr1 4651553 4651671 -192543761 + MLT1A1 LTR MaLR 274 392 -16 2 620 898 269 91 79 chr1 4651801 4652394 -192543038 - Charlie1a DNA MER1_type -345 1110 295 2 620 39 0 0 0 chr1 4652394 4652433 -192542999 + AT_rich Low_complexity Low_complexity 1 39 0 2 620 6564 61 1 0 chr1 4652552 4653408 -192542024 - L1_Mus1 LINE L1 0 6567 5711 2 620 4331 76 0 0 chr1 4653419 4654026 -192541406 + L1_Mus1 LINE L1 5999 6567 0 2 620 9224 106 5 8 chr1 4654034 4655503 -192539929 - L1_Mm LINE L1 -1501 4382 2918 2 620 780 169 22 0 chr1 4656069 4656205 -192539227 + B1_Mur2 SINE Alu 11 149 0 2 620 505 306 12 24 chr1 4656224 4656388 -192539044 + RSINE1 SINE B4 2 163 -2 2 620 189 0 0 0 chr1 4656388 4656409 -192539023 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 2 620 317 288 201 36 chr1 4656411 4656685 -192538747 + L1MB8 LINE L1 5657 5975 -203 2 620 353 240 63 63 chr1 4656819 4656930 -192538502 + PB1D7 SINE Alu 9 119 -1 2 620 511 271 78 69 chr1 4657907 4658264 -192537168 - MLT1C LTR MaLR -19 371 4 2 620 804 196 0 26 chr1 4659476 4659628 -192535804 - B1_Mur2 SINE Alu 0 149 2 2 620 335 279 0 122 chr1 4659719 4659858 -192535574 - RMER12 LTR ERVK -477 845 724 2 620 281 26 0 26 chr1 4659858 4659897 -192535535 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 620 276 207 0 32 chr1 4659923 4659986 -192535446 - B1_Mur4 SINE Alu -87 62 3 2 620 297 342 86 0 chr1 4663124 4663241 -192532191 - RMER15 LTR ERVL -10 565 439 2 620 559 274 201 16 chr1 4663713 4664155 -192531277 + L1MC3 LINE L1 5431 5954 -1831 2 620 324 120 0 0 chr1 4664213 4664263 -192531169 + (CTTG)n Simple_repeat Simple_repeat 2 51 0 2 620 717 220 15 0 chr1 4664299 4664431 -192531001 - B1_Mur1 SINE Alu 0 149 16 2 620 298 340 41 88 chr1 4664306 4664477 -192530955 - B4 SINE B4 -73 219 57 2 620 1287 263 111 49 chr1 4664499 4665194 -192530238 + L1MC3 LINE L1 6082 6819 -966 2 620 471 344 62 66 chr1 4665265 4665539 -192529893 + B4 SINE B4 2 274 -18 2 620 296 281 12 0 chr1 4665612 4665694 -192529738 + L1MC3 LINE L1 7030 7112 -673 2 620 929 178 0 0 chr1 4665710 4665851 -192529581 + B1_Mus2 SINE Alu 2 142 -5 2 620 1260 86 0 0 chr1 4665851 4666026 -192529406 + (GGAGA)n Simple_repeat Simple_repeat 2 176 0 2 620 405 0 0 0 chr1 4666030 4666075 -192529357 + (GAAAA)n Simple_repeat Simple_repeat 1 45 0 2 620 314 253 0 54 chr1 4666076 4666093 -192529339 + ID_B1 SINE B4 128 214 -10 2 620 594 67 0 0 chr1 4666093 4666168 -192529264 + B1_Mur4 SINE Alu 66 140 -10 2 620 839 99 15 0 chr1 4666168 4666299 -192529133 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 2 620 235 341 40 17 chr1 4666457 4666630 -192528802 + L1MC3 LINE L1 7335 7511 -274 2 620 334 284 116 40 chr1 4666692 4666890 -192528542 + L1MC3 LINE L1 7527 7739 -46 2 620 311 272 0 90 chr1 4666941 4667030 -192528402 + ID4 SINE ID 2 82 -1 2 620 1255 236 31 154 chr1 4667522 4667694 -192527738 + ORR1D2 LTR MaLR 4 134 -236 2 620 1054 117 7 7 chr1 4667694 4667840 -192527592 - B1_Mus1 SINE Alu -1 147 2 2 620 1255 236 31 154 chr1 4667840 4668083 -192527349 + ORR1D2 LTR MaLR 135 368 -2 2 620 782 175 304 13 chr1 4669069 4669304 -192526128 + RLTR41 LTR ERV1 1 303 -143 2 620 13220 105 2 17 chr1 4669304 4670323 -192525109 - L1Md_F LINE L1 -2727 3156 2162 2 620 189 0 0 0 chr1 4670323 4670344 -192525088 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 620 1138 72 14 0 chr1 4670345 4670484 -192524948 - B1_Mm SINE Alu -6 141 1 2 620 13220 126 5 58 chr1 4670484 4672006 -192523426 - L1Md_F LINE L1 -3722 2161 725 2 620 431 242 23 8 chr1 4672008 4672141 -192523291 - L1Md_F LINE L1 -5807 809 675 2 620 11503 176 32 11 chr1 4672346 4672447 -192522985 - L1_Mur2 LINE L1 -2293 3584 3483 2 620 225 0 0 0 chr1 4672447 4672472 -192522960 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 620 11503 174 31 10 chr1 4672472 4674776 -192520656 - L1_Mur2 LINE L1 -2395 3482 1059 2 620 740 338 26 48 chr1 4675256 4675529 -192519903 + B4 SINE B4 24 290 -2 2 620 307 287 83 41 chr1 4675630 4675913 -192519519 - MLT1B LTR MaLR -19 371 56 2 620 245 263 2 0 chr1 4675908 4675978 -192519454 + MLT1A LTR MaLR 294 380 -10 2 620 387 0 0 0 chr1 4676248 4676291 -192519141 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 620 387 0 0 0 chr1 4676604 4676647 -192518785 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 620 1154 89 6 0 chr1 4676647 4676805 -192518627 - B2_Mm1t SINE B2 -33 160 2 2 620 387 0 0 0 chr1 4677159 4677202 -192518230 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 620 261 0 0 0 chr1 4677934 4677963 -192517469 + (T)n Simple_repeat Simple_repeat 1 29 0 2 620 316 252 100 10 chr1 4679819 4679919 -192515513 + PB1D10 SINE Alu 9 117 0 2 620 2394 178 40 53 chr1 4680407 4680859 -192514573 - RLTR41 LTR ERV1 0 446 1 2 620 693 321 14 8 chr1 4680950 4681261 -192514171 - RLTR6-int LTR ERV1 -90 7688 7401 2 620 278 317 0 0 chr1 4681254 4681355 -192514077 - RLTR6-int LTR ERV1 -420 7181 7081 2 620 257 363 8 0 chr1 4681617 4681741 -192513691 - MuRRS4-int LTR ERV1 -2018 5538 5414 2 620 390 259 63 38 chr1 4681863 4682005 -192513427 - MuRRS4-int LTR ERV1 -1049 4014 3886 2 620 519 218 55 40 chr1 4681995 4682132 -192513300 - MuRRS4-int LTR ERV1 -723 3967 3714 2 620 688 307 10 3 chr1 4684690 4684940 -192510492 - MuRRS4-int LTR ERV1 -1337 3726 3533 2 620 393 276 150 25 chr1 4685276 4685512 -192509920 - MuRRS4-int LTR ERV1 -1947 3116 2929 2 620 1114 264 62 15 chr1 4685545 4685883 -192509549 - Lx9 LINE L1 -920 6724 6371 2 620 583 276 103 16 chr1 4686218 4686402 -192509030 + B3 SINE B2 11 210 -6 2 620 760 200 15 0 chr1 4686736 4686866 -192508566 + B1_Mur2 SINE Alu 5 136 -13 2 620 524 294 20 20 chr1 4686914 4687060 -192508372 - B4 SINE B4 -2 290 145 2 620 349 336 102 0 chr1 4687149 4687277 -192508155 - B4 SINE B4 -147 145 5 2 620 225 0 0 0 chr1 4687356 4687381 -192508051 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 620 22 0 0 0 chr1 4687534 4687556 -192507876 + AT_rich Low_complexity Low_complexity 1 22 0 2 620 1033 259 10 5 chr1 4687758 4687960 -192507472 + B3 SINE B2 1 203 -13 2 620 25 31 0 0 chr1 4687970 4688002 -192507430 + AT_rich Low_complexity Low_complexity 1 32 0 2 620 976 147 0 20 chr1 4688310 4688456 -192506976 + B1_Mur3 SINE Alu 3 145 -4 2 620 801 82 0 0 chr1 4688456 4688566 -192506866 + (GGA)n Simple_repeat Simple_repeat 3 112 0 2 620 234 350 119 0 chr1 4689072 4689249 -192506183 - L1M5 LINE L1 -542 5582 5385 2 620 1316 41 0 0 chr1 4689267 4689414 -192506018 - B1_Mus1 SINE Alu -1 147 1 2 620 1262 239 123 28 chr1 4689526 4689917 -192505515 + Lx8 LINE L1 7043 7470 -3 2 620 1271 48 0 0 chr1 4689947 4690094 -192505338 + B1_Mm SINE Alu 1 147 0 2 620 756 324 57 33 chr1 4690156 4690580 -192504852 - L1ME3B LINE L1 -109 6131 5698 2 620 531 69 0 0 chr1 4690623 4690695 -192504737 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 620 299 233 0 10 chr1 4690812 4690916 -192504516 + CT-rich Low_complexity Low_complexity 3 105 0 2 620 463 219 211 0 chr1 4691903 4692017 -192503415 + B3A SINE B2 3 140 -58 2 620 504 0 0 0 chr1 4692113 4692169 -192503263 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 620 233 273 61 0 chr1 4692791 4692857 -192502575 + Kanga1a DNA Tc2 658 727 -27 3 620 714 105 0 0 chr1 4693013 4693118 -192502314 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 620 262 337 0 0 chr1 4693371 4693463 -192501969 - Kanga1c DNA Tc2 -16 713 622 3 620 276 342 49 37 chr1 4693534 4693698 -192501734 - LTR16A LTR ERVL -100 351 186 3 620 643 301 137 33 chr1 4693987 4694195 -192501237 - L1MB3 LINE L1 -39 6144 5916 3 620 441 0 0 0 chr1 4694195 4694244 -192501188 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 620 643 301 137 33 chr1 4694244 4694457 -192500975 - L1MB3 LINE L1 -268 5915 5679 3 620 384 22 0 0 chr1 4694585 4694630 -192500802 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 3 620 570 264 72 0 chr1 4694786 4694911 -192500521 - B1F2 SINE Alu -14 135 2 3 620 494 280 28 9 chr1 4695023 4695131 -192500301 + B1F2 SINE Alu 1 110 -39 3 620 6483 100 22 2 chr1 4695133 4696014 -192499418 + Lx3A LINE L1 6074 6971 -10 3 620 243 88 0 0 chr1 4696080 4696114 -192499318 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 3 620 225 0 0 0 chr1 4696790 4696815 -192498617 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 620 290 245 119 64 chr1 4696989 4697098 -192498334 - PB1D10 SINE Alu -2 115 1 3 620 397 294 50 0 chr1 4697276 4697395 -192498037 + MLT1B LTR MaLR 71 195 -195 3 620 737 201 57 14 chr1 4697499 4697640 -192497792 - B1_Mus2 SINE Alu 0 147 1 3 620 906 197 166 0 chr1 4698249 4698442 -192496990 - URR1B DNA MER1_type 0 225 1 3 620 4363 95 5 2 chr1 4698535 4699103 -192496329 - L1_Mus1 LINE L1 0 6567 5998 3 620 9844 65 96 4 chr1 4699114 4701234 -192494198 - L1Md_F2 LINE L1 -3 6579 4214 3 620 7422 75 10 3 chr1 4701229 4702203 -192493229 - L1Md_F2 LINE L1 0 6582 5602 3 620 5980 82 1 12 chr1 4702200 4702500 -192492932 + L1_Mm LINE L1 4817 5116 -767 3 620 4561 16 8 4 chr1 4702500 4702991 -192492441 - MT2_Mm LTR ERVL 0 493 1 3 620 5980 82 1 12 chr1 4702991 4703495 -192491937 + L1_Mm LINE L1 5117 5612 -271 3 620 20940 82 20 50 chr1 4703488 4707232 -192488200 - L1Md_F2 LINE L1 -1656 4227 593 3 620 283 339 68 17 chr1 4707260 4707377 -192488055 + Tigger5 DNA MER2_type 4 126 -2280 3 620 473 252 20 10 chr1 4707362 4707462 -192487970 - PB1D7 SINE Alu -6 114 14 3 620 312 327 28 28 chr1 4707378 4707485 -192487947 - ID_B1 SINE B4 -48 176 70 3 620 240 78 78 0 chr1 4707907 4707958 -192487474 + CT-rich Low_complexity Low_complexity 2 56 0 3 620 357 24 0 0 chr1 4707964 4708006 -192487426 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 620 476 287 241 10 chr1 4708511 4708702 -192486730 + B4A SINE B4 56 290 -2 3 620 712 206 38 0 chr1 4708831 4708962 -192486470 + B1_Mur2 SINE Alu 3 138 -11 3 620 186 43 0 0 chr1 4708962 4708985 -192486447 + (CTAA)n Simple_repeat Simple_repeat 3 25 0 3 620 1266 249 87 59 chr1 4709641 4710033 -192485399 + MTD LTR MaLR 2 404 -15 3 620 253 272 36 24 chr1 4710296 4710379 -192485053 - B3A SINE B2 -114 84 1 3 620 2895 56 49 39 chr1 4710639 4711046 -192484386 + RLTR10A LTR ERVK 1 411 0 3 620 205 305 205 18 chr1 4711145 4711292 -192484140 + MIRb SINE MIR 58 229 -33 3 620 1302 41 0 0 chr1 4712055 4712201 -192483231 + B1_Mm SINE Alu 2 147 0 3 620 231 103 0 0 chr1 4712224 4712263 -192483169 + (A)n Simple_repeat Simple_repeat 1 39 0 3 620 402 74 0 0 chr1 4712741 4712795 -192482637 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 620 396 206 54 11 chr1 4713367 4713460 -192481972 - U6 snRNA snRNA -10 97 1 3 620 197 214 178 41 chr1 4714876 4714949 -192480483 - L2a LINE L2 -49 3377 3295 3 620 24 53 0 0 chr1 4715809 4715847 -192479585 + AT_rich Low_complexity Low_complexity 1 38 0 3 620 557 325 30 54 chr1 4715893 4716059 -192479373 - RSINE1 SINE B4 -2 163 2 3 620 234 0 0 0 chr1 4716090 4716116 -192479316 + (CTTTG)n Simple_repeat Simple_repeat 3 28 0 3 620 1366 248 6 34 chr1 4716117 4716442 -192478990 - Lx5 LINE L1 -28 7432 7117 3 620 3386 229 58 26 chr1 4716445 4717207 -192478225 - Lx5 LINE L1 -576 6884 5907 3 620 5031 41 0 0 chr1 4717207 4717766 -192477666 - L1Md_T LINE L1 -1 6581 6023 3 77 11771 180 54 3 chr1 4717766 4719140 -192476292 - Lx5 LINE L1 -1144 5906 4460 3 621 1250 14 0 7 chr1 4719140 4719289 -192476143 + (TTC)n Simple_repeat Simple_repeat 2 149 0 3 621 11771 179 54 3 chr1 4719289 4720189 -192475243 - Lx5 LINE L1 -1421 4459 3514 3 621 255 314 30 76 chr1 4720202 4720333 -192475099 + L1MC4 LINE L1 7903 8027 -15 3 621 2540 150 89 2 chr1 4720475 4720528 -192474904 - L1_Mur2 LINE L1 -4127 1753 1689 3 621 192 97 0 0 chr1 4720528 4720559 -192474873 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 621 2540 150 89 2 chr1 4720559 4720725 -192474707 - L1_Mur2 LINE L1 -4192 1688 1494 3 621 390 42 0 0 chr1 4720725 4720773 -192474659 + (TCC)n Simple_repeat Simple_repeat 2 49 0 3 621 2540 186 49 60 chr1 4720773 4721443 -192473989 - L1_Mur2 LINE L1 -4387 1493 863 3 621 16588 101 6 4 chr1 4721496 4722957 -192472475 - L1VL1 LINE L1 -2258 3625 2160 3 621 3049 68 5 10 chr1 4722957 4723359 -192472073 + MTB LTR MaLR 1 400 0 3 621 16588 103 6 13 chr1 4723359 4725140 -192470292 - L1VL1 LINE L1 -3724 2159 397 3 621 366 281 32 58 chr1 4725734 4725889 -192469543 + RodERV21-int LTR ERV1 931 1081 -3910 3 621 275 310 39 4 chr1 4726382 4726616 -192468816 + MuLV-int LTR ERV1 4890 4949 -2657 3 621 285 51 0 0 chr1 4726954 4726993 -192468439 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 621 184 54 0 75 chr1 4726997 4727037 -192468395 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 621 1111 269 96 30 chr1 4727057 4727586 -192467846 + Lx7 LINE L1 5377 5969 -1675 3 621 466 152 0 0 chr1 4728340 4728419 -192467013 - B3 SINE B2 -10 206 128 3 621 23 33 0 0 chr1 4728428 4728458 -192466974 + AT_rich Low_complexity Low_complexity 1 30 0 3 621 182 311 0 32 chr1 4728833 4728896 -192466536 - MER5B DNA MER1_type -111 67 7 3 621 249 343 93 19 chr1 4729065 4729172 -192466260 + PB1 SINE Alu 6 120 -7 3 621 548 111 10 0 chr1 4730130 4730229 -192465203 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 621 379 311 13 44 chr1 4730239 4730397 -192465035 - B3A SINE B2 -45 153 1 3 621 564 280 98 71 chr1 4731847 4732101 -192463331 - MLT1B LTR MaLR -8 382 122 3 621 680 165 8 8 chr1 4733967 4734089 -192461343 + B1_Mur4 SINE Alu 29 150 0 3 621 41 21 0 0 chr1 4734313 4734361 -192461071 + AT_rich Low_complexity Low_complexity 1 48 0 3 621 333 303 148 0 chr1 4734364 4734519 -192460913 - MLT1L LTR MaLR -71 539 362 3 621 285 29 0 0 chr1 4734775 4734809 -192460623 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 621 240 338 64 57 chr1 4735027 4735184 -192460248 - MIRb SINE MIR -42 226 65 3 621 390 305 85 0 chr1 4735886 4736004 -192459428 + MER3 DNA MER1_type 80 207 -2 3 621 356 324 123 74 chr1 4737615 4737965 -192457467 + MLT1A LTR MaLR 4 370 -4 3 621 279 0 0 0 chr1 4738290 4738321 -192457111 + (A)n Simple_repeat Simple_repeat 1 31 0 3 621 193 232 95 24 chr1 4739138 4739222 -192456210 + L2 LINE L2 2578 2667 -752 3 621 497 227 169 8 chr1 4739446 4739739 -192455693 + L1MB3 LINE L1 5827 6172 -11 3 621 1197 34 0 20 chr1 4739745 4739895 -192455537 + B1_Mus1 SINE Alu 2 148 0 3 621 333 0 0 0 chr1 4739904 4739941 -192455491 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 621 738 298 80 23 chr1 4740066 4740454 -192454978 + L1M3 LINE L1 3350 3759 -2387 3 621 241 239 227 0 chr1 4740538 4740626 -192454806 + PB1D10 SINE Alu 10 117 0 3 621 657 199 0 30 chr1 4740710 4740845 -192454587 + B1_Mur2 SINE Alu 19 149 0 3 621 885 238 176 15 chr1 4740988 4741415 -192454017 + L1M3 LINE L1 4050 4558 -1588 3 621 2738 164 102 12 chr1 4741422 4742093 -192453339 + RMER6C LTR ERVK 1 700 -56 3 621 649 190 117 0 chr1 4742087 4742224 -192453208 + RMER6D LTR ERVK 564 716 -4 3 621 600 308 67 17 chr1 4742266 4742563 -192452869 + L1M3 LINE L1 4592 4903 -1237 3 621 612 328 36 21 chr1 4742640 4742973 -192452459 + RLTR6-int LTR ERV1 2851 3188 -4590 3 621 309 380 16 5 chr1 4743062 4743250 -192452182 + MURVY-int LTR ERV1 1758 1947 -3370 3 621 529 325 89 56 chr1 4743331 4744234 -192451198 + MURVY-int LTR ERV1 3529 4415 -3191 3 621 344 277 72 33 chr1 4744765 4744918 -192450514 + LTR40b LTR ERVL 302 460 -2 3 621 755 227 162 0 chr1 4745032 4745217 -192450215 + B3 SINE B2 2 216 0 3 621 1128 128 0 0 chr1 4745306 4745485 -192449947 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 621 306 0 0 0 chr1 4745489 4745523 -192449909 + (GAA)n Simple_repeat Simple_repeat 1 34 0 3 621 1042 15 15 8 chr1 4745552 4745684 -192449748 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 3 621 590 106 17 26 chr1 4745687 4745701 -192449731 + (GGGGA)n Simple_repeat Simple_repeat 2 15 0 3 621 1045 51 16 38 chr1 4745701 4745884 -192449548 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 3 621 590 106 17 26 chr1 4745884 4745985 -192449447 + (GGGGA)n Simple_repeat Simple_repeat 1 101 0 3 621 217 220 0 39 chr1 4746851 4746903 -192448529 + B1F SINE Alu 100 149 0 3 621 621 102 18 9 chr1 4747345 4747454 -192447978 + (TCTCCC)n Simple_repeat Simple_repeat 3 112 0 3 621 330 260 9 4 chr1 4747453 4747693 -192447739 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 621 500 286 58 40 chr1 4747693 4747970 -192447462 - L1MB8 LINE L1 -186 5992 5711 3 621 584 218 204 11 chr1 4747977 4748158 -192447274 + B3 SINE B2 1 216 0 3 621 1650 37 0 0 chr1 4748177 4748368 -192447064 + B2_Mm1a SINE B2 1 191 -2 3 621 273 252 130 79 chr1 4748740 4749060 -192446372 - L1MB8 LINE L1 -752 5432 5098 3 621 610 242 78 49 chr1 4749839 4750043 -192445389 + B3 SINE B2 1 210 -6 3 621 744 130 0 25 chr1 4750075 4750193 -192445239 - B1_Mur4 SINE Alu -1 149 35 3 621 232 261 125 75 chr1 4750101 4750221 -192445211 - MT2B LTR ERVL -323 278 153 3 621 1217 62 0 0 chr1 4750248 4750394 -192445038 + B1_Mus2 SINE Alu 2 147 0 3 621 216 86 0 0 chr1 4750397 4750432 -192445000 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 621 275 0 29 0 chr1 4750914 4750949 -192444483 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 621 269 251 11 76 chr1 4750953 4751004 -192444428 + B4A SINE B4 51 88 -204 4 621 418 252 29 2 chr1 4751004 4751122 -192444310 + PB1D7 SINE Alu 4 127 -22 4 621 282 29 0 0 chr1 4751196 4751231 -192444201 + (T)n Simple_repeat Simple_repeat 1 35 0 4 621 207 0 0 0 chr1 4751248 4751271 -192444161 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 621 188 0 0 119 chr1 4751274 4751333 -192444099 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 4 621 270 208 0 0 chr1 4751339 4751387 -192444045 - ID4 SINE ID -3 80 33 4 621 3109 26 0 0 chr1 4752479 4752825 -192442607 + ORR1A0 LTR MaLR 1 346 0 4 621 191 293 90 22 chr1 4753156 4753260 -192442172 + MIRb SINE MIR 18 135 -133 4 621 218 253 9 133 chr1 4753344 4753449 -192441983 + PB1D10 SINE Alu 5 96 -21 4 621 259 265 0 29 chr1 4753624 4753694 -192441738 - ID2 SINE ID -9 74 7 4 621 738 130 97 8 chr1 4753742 4753866 -192441566 + B1_Mus1 SINE Alu 5 139 -9 4 621 285 296 0 12 chr1 4753919 4754001 -192441431 - PB1D10 SINE Alu -34 83 3 4 621 505 228 61 0 chr1 4754408 4754522 -192440910 + B1_Mur1 SINE Alu 9 129 -20 4 621 214 244 0 22 chr1 4754580 4754626 -192440806 + Alu SINE Alu 29 73 -102 4 621 641 191 38 0 chr1 4754838 4754969 -192440463 + B1_Mur1 SINE Alu 12 147 -2 4 621 1213 102 51 0 chr1 4755097 4755274 -192440158 - B2_Mm1t SINE B2 -6 187 2 4 621 410 0 0 20 chr1 4755643 4755694 -192439738 + (GAAAA)n Simple_repeat Simple_repeat 2 51 0 4 621 573 55 0 0 chr1 4755694 4755766 -192439666 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 4 621 1076 133 0 6 chr1 4755769 4755950 -192439482 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 4 621 684 175 35 35 chr1 4755955 4756097 -192439335 - B1_Mur2 SINE Alu -7 142 1 4 621 693 230 28 28 chr1 4756107 4756286 -192439146 - B3A SINE B2 -16 182 4 4 621 1263 34 0 0 chr1 4756461 4756608 -192438824 + B1_Mus2 SINE Alu 1 147 0 4 621 182 37 0 36 chr1 4757345 4757373 -192438059 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 621 1224 14 0 0 chr1 4757373 4757511 -192437921 - B1_Mus1 SINE Alu -9 139 2 4 621 24 0 0 0 chr1 4758251 4758275 -192437157 + AT_rich Low_complexity Low_complexity 1 24 0 4 621 787 194 14 0 chr1 4758429 4758573 -192436859 + B1_Mus2 SINE Alu 2 147 0 4 621 331 272 0 0 chr1 4758695 4758776 -192436656 - B1_Mus2 SINE Alu -61 86 6 4 621 348 290 88 37 chr1 4759111 4759247 -192436185 - RSINE1 SINE B4 -22 143 1 4 621 233 314 147 0 chr1 4759268 4759370 -192436062 + PB1D10 SINE Alu 1 117 0 4 621 315 132 0 0 chr1 4759805 4759873 -192435559 + (T)n Simple_repeat Simple_repeat 1 68 0 4 621 480 48 0 0 chr1 4761072 4761135 -192434297 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 621 252 0 0 0 chr1 4762622 4762650 -192432782 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 621 30 27 0 0 chr1 4762684 4762721 -192432711 + AT_rich Low_complexity Low_complexity 1 37 0 4 621 520 320 22 22 chr1 4762833 4763015 -192432417 - B4A SINE B4 -109 183 2 4 621 2029 148 86 3 chr1 4763630 4764004 -192431428 + MTC LTR MaLR 9 413 -8 4 621 226 192 81 14 chr1 4764035 4764109 -192431323 - MIRc SINE MIR -110 158 80 4 621 329 286 3 77 chr1 4764510 4764663 -192430769 - B3 SINE B2 -4 194 55 4 621 442 233 16 49 chr1 4764780 4764902 -192430530 - PB1D9 SINE Alu -1 119 2 4 621 795 138 85 0 chr1 4766144 4766274 -192429158 + B1_Mur4 SINE Alu 2 142 -8 4 621 243 165 241 23 chr1 4767094 4767181 -192428251 - RSINE1 SINE B4 -48 117 12 4 621 306 0 0 0 chr1 4767263 4767297 -192428135 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 621 216 0 0 0 chr1 4767733 4767757 -192427675 + (A)n Simple_repeat Simple_repeat 1 24 0 4 621 180 269 95 51 chr1 4767937 4768074 -192427358 - MIR SINE MIR -63 199 57 4 621 319 346 70 8 chr1 4768211 4768339 -192427093 - RSINE1 SINE B4 -27 138 3 4 621 1096 169 4 108 chr1 4768399 4768434 -192426998 + B3 SINE B2 1 28 -188 4 621 1055 28 12 110 chr1 4768434 4768597 -192426835 + B1_Mus1 SINE Alu 2 148 0 4 621 1096 169 4 108 chr1 4768597 4768793 -192426639 + B3 SINE B2 29 208 -8 4 621 23 0 0 0 chr1 4768795 4768818 -192426614 + AT_rich Low_complexity Low_complexity 1 23 0 4 621 405 118 0 0 chr1 4769190 4769251 -192426181 + (T)n Simple_repeat Simple_repeat 1 61 0 4 621 1157 82 0 0 chr1 4769251 4769398 -192426034 - B1_Mus2 SINE Alu 0 147 1 4 621 405 118 0 0 chr1 4769398 4769412 -192426020 + (T)n Simple_repeat Simple_repeat 1 14 0 4 621 1545 53 21 0 chr1 4769515 4769704 -192425728 - B2_Mm1a SINE B2 0 193 1 4 621 532 283 14 14 chr1 4770146 4770286 -192425146 - B1F SINE Alu 0 149 10 4 621 851 212 65 5 chr1 4770638 4770823 -192424609 + B3 SINE B2 20 215 -1 4 621 210 229 100 0 chr1 4771021 4771091 -192424341 + B1_Mus2 SINE Alu 71 147 0 4 621 748 255 79 15 chr1 4771115 4771318 -192424114 + B3 SINE B2 1 216 0 4 621 215 31 0 30 chr1 4771360 4771393 -192424039 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 4 621 502 214 60 15 chr1 4771503 4771636 -192423796 - B3 SINE B2 -4 212 74 4 621 470 224 56 0 chr1 4771938 4772045 -192423387 - B3 SINE B2 -103 113 1 4 621 491 285 90 12 chr1 4772282 4772449 -192422983 + Tigger7 DNA MER2_type 291 470 -2021 4 621 318 250 31 0 chr1 4772457 4772553 -192422879 + Tigger7 DNA MER2_type 2335 2433 -58 4 621 1373 77 27 0 chr1 4773062 4773245 -192422187 + B2_Mm2 SINE B2 1 188 -7 4 621 293 191 38 0 chr1 4773295 4773400 -192422032 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 621 1557 53 5 0 chr1 4773435 4773624 -192421808 + B2_Mm1a SINE B2 3 192 -1 4 621 219 133 0 0 chr1 4773674 4773719 -192421713 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 621 225 83 0 0 chr1 4773986 4774022 -192421410 + (A)n Simple_repeat Simple_repeat 1 36 0 4 621 219 267 133 0 chr1 4774467 4774542 -192420890 + PB1 SINE Alu 22 106 -21 4 621 278 299 0 40 chr1 4774489 4774590 -192420842 + ID_B1 SINE B4 124 220 -4 4 621 989 92 0 0 chr1 4774612 4774742 -192420690 + B1_Mm SINE Alu 1 130 -17 4 621 189 0 0 0 chr1 4774742 4774763 -192420669 + (G)n Simple_repeat Simple_repeat 1 21 0 4 621 220 272 49 73 chr1 4774784 4774907 -192420525 + BC1_Mm scRNA scRNA 2 121 -31 4 621 2281 152 85 21 chr1 4776580 4777004 -192418428 - RMER1B Other Other 0 1066 616 4 621 5837 52 39 147 chr1 4777642 4778546 -192416886 - RLTR13C2 LTR ERVK 0 808 3 4 621 3892 64 64 2 chr1 4778546 4779028 -192416404 + RLTR1B LTR ERV1 1 512 0 4 621 1543 64 27 0 chr1 4779254 4779442 -192415990 + B2_Mm1a SINE B2 1 193 0 4 621 1398 279 62 131 chr1 4779544 4779996 -192415436 + L1M2 LINE L1 4010 4394 -1749 4 621 969 231 30 10 chr1 4779996 4780193 -192415239 + B3 SINE B2 4 204 -12 4 621 1398 279 62 131 chr1 4780193 4780488 -192414944 + L1M2 LINE L1 4395 4637 -1506 4 621 897 10 0 0 chr1 4780488 4780590 -192414842 + (GAA)n Simple_repeat Simple_repeat 2 103 0 4 621 1398 279 62 131 chr1 4780590 4780671 -192414761 + L1M2 LINE L1 4638 4722 -1421 4 621 180 0 0 0 chr1 4780671 4780691 -192414741 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 621 1398 279 62 131 chr1 4780691 4780921 -192414511 + L1M2 LINE L1 4723 4997 -1146 4 621 383 256 35 0 chr1 4780921 4780954 -192414478 + ID SINE ID 48 83 -141 4 621 403 98 3 0 chr1 4780954 4781013 -192414419 + PB1D9 SINE Alu 3 63 -86 4 621 11860 103 32 10 chr1 4781013 4782754 -192412678 - RMER16-int LTR ERVK -2053 3353 1575 4 621 270 268 32 118 chr1 4782832 4782960 -192412472 - SRV_MM-int LTR ERVK -3770 2397 2278 4 621 1282 48 7 0 chr1 4782960 4783107 -192412325 - B1_Mus1 SINE Alu 0 148 1 4 621 270 268 32 118 chr1 4783107 4783164 -192412268 - SRV_MM-int LTR ERVK -3890 2277 2228 4 621 540 191 171 68 chr1 4783221 4783437 -192411995 - RMER16-int LTR ERVK -4834 2572 2335 4 621 343 247 37 12 chr1 4783434 4783516 -192411916 - RMER16-int LTR ERVK -1731 1583 1500 4 621 4341 129 33 18 chr1 4783613 4784371 -192411061 - RMER16-int LTR ERVK -3894 1512 532 4 621 198 0 0 0 chr1 4784373 4784395 -192411037 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 4 621 12244 150 36 14 chr1 4784433 4785165 -192410267 + Lx6 LINE L1 2142 2887 -2993 4 621 432 0 0 0 chr1 4785165 4785213 -192410219 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 4 621 12244 150 36 14 chr1 4785213 4785293 -192410139 + Lx6 LINE L1 2888 2966 -2914 4 621 288 20 20 39 chr1 4785293 4785344 -192410088 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 621 1210 43 0 0 chr1 4785344 4785482 -192409950 - B1_Mus1 SINE Alu -10 138 1 4 621 12244 150 36 14 chr1 4785482 4785494 -192409938 + Lx6 LINE L1 2967 2971 -2909 4 621 4979 161 96 18 chr1 4785494 4786100 -192409332 - RMER19B LTR ERVK -2 900 277 4 621 243 0 0 0 chr1 4786100 4786127 -192409305 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 621 4979 161 96 18 chr1 4786127 4786355 -192409077 - RMER19B LTR ERVK -626 276 3 4 621 12244 150 36 14 chr1 4786355 4787822 -192407610 + Lx6 LINE L1 2972 4484 -1396 4 621 2209 190 29 31 chr1 4787820 4788416 -192407016 + Lx6 LINE L1 5453 6067 -1393 4 621 1410 209 17 28 chr1 4788417 4788707 -192406725 - MTC LTR MaLR -134 287 1 4 621 627 135 67 13 chr1 4788707 4788857 -192406575 - MTC-int LTR MaLR 0 1258 1101 4 621 850 94 0 38 chr1 4788835 4788967 -192406465 + B1_Mus1 SINE Alu 22 148 0 4 621 1660 174 86 32 chr1 4789330 4789668 -192405764 + ORR1B1 LTR MaLR 39 394 0 4 621 23 0 0 0 chr1 4789894 4789917 -192405515 + AT_rich Low_complexity Low_complexity 1 23 0 4 621 5237 49 19 2 chr1 4790131 4790726 -192404706 - RLTR1D LTR ERV1 0 605 1 4 621 911 162 15 0 chr1 4790736 4790872 -192404560 + B1_Mur3 SINE Alu 1 138 -11 4 621 2144 176 73 10 chr1 4791481 4791877 -192403555 + MTC LTR MaLR 1 421 0 4 621 897 176 78 21 chr1 4791877 4792069 -192403363 + MTC-int LTR MaLR 1 203 -1055 4 621 2630 158 33 45 chr1 4792100 4792617 -192402815 - RLTR12B LTR ERVK -15 513 3 4 621 234 160 20 20 chr1 4792617 4792662 -192402770 + B1_Mm SINE Alu 103 147 0 4 621 2740 67 40 94 chr1 4792676 4793025 -192402407 + RLTR9D LTR ERVK 1 340 -63 5 621 1345 27 0 0 chr1 4793025 4793172 -192402260 - B1_Mus2 SINE Alu 0 147 1 5 621 2740 67 40 94 chr1 4793172 4793248 -192402184 + RLTR9D LTR ERVK 341 403 0 5 621 1497 210 66 0 chr1 4793295 4793581 -192401851 - MT2A LTR ERVL -77 456 152 5 621 690 270 9 2 chr1 4793585 4793732 -192401700 - B1_Mur1 SINE Alu 0 147 1 5 621 792 132 86 22 chr1 4793741 4793880 -192401552 - MT2A LTR ERVL -385 148 1 5 621 261 0 0 0 chr1 4794151 4794180 -192401252 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 5 621 737 212 88 5 chr1 4794766 4794970 -192400462 + L1M3 LINE L1 4182 4402 -1738 5 621 696 269 20 0 chr1 4794976 4795125 -192400307 + RSINE1 SINE B4 10 161 -4 5 621 1414 93 11 16 chr1 4795257 4795443 -192399989 - B2_Mm2 SINE B2 -9 186 2 5 621 446 260 8 24 chr1 4795443 4795569 -192399863 + L1M3 LINE L1 4502 4625 -1515 5 621 3013 143 45 12 chr1 4795911 4796394 -192399038 + RLTR19 LTR ERVK 1 499 0 5 621 390 159 0 0 chr1 4796461 4796530 -192398902 + CT-rich Low_complexity Low_complexity 3 71 0 5 621 1047 80 80 0 chr1 4796534 4796671 -192398761 - B1_Mus1 SINE Alu 0 148 1 5 621 22 56 0 0 chr1 4796702 4796738 -192398694 + AT_rich Low_complexity Low_complexity 1 36 0 5 621 676 154 187 0 chr1 4797066 4797189 -192398243 + B1_Mus2 SINE Alu 2 147 0 5 621 23 78 0 0 chr1 4797876 4797927 -192397505 + GC_rich Low_complexity Low_complexity 1 51 0 5 621 983 229 34 19 chr1 4799195 4799404 -192396028 + B3 SINE B2 5 216 0 5 621 234 116 0 0 chr1 4799426 4799469 -192395963 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 621 1329 27 0 0 chr1 4799470 4799616 -192395816 - B1_Mus2 SINE Alu 0 147 2 5 621 22 35 0 0 chr1 4799624 4799653 -192395779 + AT_rich Low_complexity Low_complexity 1 29 0 5 621 266 303 56 11 chr1 4799690 4799780 -192395652 + PB1 SINE Alu 19 112 -15 5 621 180 0 0 0 chr1 4799909 4799929 -192395503 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 621 360 0 0 0 chr1 4799944 4799984 -192395448 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 621 302 229 27 54 chr1 4799984 4800058 -192395374 - RSINE1 SINE B4 -50 115 44 5 621 286 262 60 23 chr1 4800433 4800552 -192394880 - B1F2 SINE Alu -1 116 8 5 621 499 265 105 39 chr1 4800865 4801018 -192394414 - B3 SINE B2 -53 163 1 5 621 1599 6 0 0 chr1 4801030 4801210 -192394222 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 621 360 0 0 0 chr1 4801210 4801250 -192394182 + (TCC)n Simple_repeat Simple_repeat 3 42 0 5 621 367 253 35 46 chr1 4801250 4801337 -192394095 - B4 SINE B4 -205 87 2 5 621 684 212 8 0 chr1 4801456 4801574 -192393858 + PB1D9 SINE Alu 2 120 0 5 621 393 22 0 0 chr1 4801644 4801690 -192393742 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 621 387 0 0 0 chr1 4801690 4801732 -192393700 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 621 186 43 0 0 chr1 4801886 4801909 -192393523 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 621 1327 40 0 0 chr1 4802263 4802411 -192393021 + B1_Mus1 SINE Alu 1 148 0 5 621 198 0 0 0 chr1 4802411 4802433 -192392999 + (A)n Simple_repeat Simple_repeat 1 22 0 5 621 453 90 83 14 chr1 4802447 4802537 -192392895 - B1_Mm SINE Alu -6 141 2 5 621 811 187 58 0 chr1 4803226 4803365 -192392067 - B1_Mur2 SINE Alu -1 148 2 5 621 485 204 99 46 chr1 4803774 4803919 -192391513 + B1_Mm SINE Alu 1 144 -5 5 621 306 261 105 32 chr1 4803999 4804094 -192391338 - RSINE1 SINE B4 -60 105 4 5 621 1391 67 10 25 chr1 4804247 4804445 -192390987 + B2_Mm2 SINE B2 1 195 0 5 621 1150 43 58 0 chr1 4804627 4804766 -192390666 + B1_Mus2 SINE Alu 1 147 0 5 621 1087 117 7 0 chr1 4804825 4804970 -192390462 + B1_Mus2 SINE Alu 2 147 0 5 621 263 265 43 21 chr1 4805451 4805580 -192389852 + PB1D10 SINE Alu 9 139 -10 5 621 457 227 370 0 chr1 4805588 4805625 -192389807 - B3 SINE B2 -1 215 179 5 621 276 30 0 0 chr1 4805625 4805658 -192389774 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 621 457 227 370 0 chr1 4805658 4805774 -192389658 - B3 SINE B2 -38 178 7 5 621 1339 27 0 0 chr1 4806016 4806163 -192389269 - B1_Mm SINE Alu 0 147 1 5 621 243 170 18 36 chr1 4806200 4806255 -192389177 - 4.5SRNA scRNA scRNA -1 93 40 5 621 433 103 14 14 chr1 4806207 4806276 -192389156 - B1_Mus1 SINE Alu -58 90 22 5 621 576 213 19 0 chr1 4806274 4806382 -192389050 + B1_Mur3 SINE Alu 34 143 -6 5 621 271 175 0 0 chr1 4806403 4806443 -192388989 - B1_Mur4 SINE Alu -110 40 1 5 621 300 72 45 45 chr1 4806545 4806633 -192388799 + T-rich Low_complexity Low_complexity 2 89 0 5 621 1234 74 0 0 chr1 4806633 4806781 -192388651 - B1_Mus1 SINE Alu 0 148 1 5 621 8292 66 19 77 chr1 4806871 4808037 -192387395 + MTA_Mm-int LTR MaLR 1 1098 0 5 621 3541 35 5 0 chr1 4808037 4808431 -192387001 + MTA_Mm LTR MaLR 1 396 0 5 621 430 271 48 7 chr1 4808557 4808702 -192386730 - L1MB5 LINE L1 -217 5957 5807 5 621 785 306 58 8 chr1 4808739 4808999 -192386433 - B4A SINE B4 -18 274 2 5 621 625 272 143 4 chr1 4809001 4809252 -192386180 - L1MB8 LINE L1 -347 5831 5546 5 621 816 265 57 41 chr1 4809275 4809519 -192385913 - B4 SINE B4 -12 280 33 5 621 251 28 28 0 chr1 4809520 4809556 -192385876 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 621 1079 98 28 0 chr1 4809566 4809709 -192385723 - B1_Mus2 SINE Alu 0 147 1 5 621 213 283 83 42 chr1 4810253 4810349 -192385083 - B1F SINE Alu -49 100 1 5 621 679 266 81 6 chr1 4810802 4810976 -192384456 - B3 SINE B2 0 216 30 5 621 550 244 38 30 chr1 4811153 4811284 -192384148 + B1F1 SINE Alu 7 138 -11 5 621 331 204 128 88 chr1 4811307 4811355 -192384077 - L1MB8 LINE L1 -705 5473 5432 5 621 334 227 86 76 chr1 4811355 4811460 -192383972 - PB1D10 SINE Alu -8 109 4 5 621 463 206 128 84 chr1 4811460 4811624 -192383808 - L1MB8 LINE L1 -747 5431 5257 5 621 2005 165 119 0 chr1 4811624 4811976 -192383456 - ORR1B1 LTR MaLR 0 394 1 5 621 463 234 143 20 chr1 4811976 4812092 -192383340 - L1MB8 LINE L1 -890 5256 5131 5 621 529 264 178 15 chr1 4812150 4812554 -192382878 - L1MB8 LINE L1 -1221 4925 4456 5 621 323 304 12 3 chr1 4812927 4813020 -192382412 + B1F SINE Alu 5 98 -51 5 621 1241 297 98 11 chr1 4813123 4813698 -192381734 - Lx7 LINE L1 -2 7471 6838 5 621 1345 27 0 0 chr1 4813711 4813858 -192381574 - B1_Mm SINE Alu 0 147 1 5 621 952 244 52 55 chr1 4813913 4814221 -192381211 + ORR1D1 LTR MaLR 1 307 -67 5 621 1052 59 0 0 chr1 4814235 4814370 -192381062 + B2_Mm2 SINE B2 1 135 -60 5 621 922 175 21 26 chr1 4814387 4814581 -192380851 + ORR1D1-int LTR MaLR 1178 1370 0 5 621 1073 201 187 67 chr1 4814581 4814912 -192380520 + ORR1D1 LTR MaLR 1 371 -3 5 621 384 225 54 0 chr1 4814948 4815059 -192380373 + L1MA7 LINE L1 6169 6285 -6 5 621 2034 45 49 4 chr1 4815204 4815447 -192379985 - L1_Mus1 LINE L1 0 6567 6314 5 621 3872 247 84 59 chr1 4815510 4816603 -192378829 - Lx7 LINE L1 -1014 6682 5536 5 621 1243 48 0 0 chr1 4816603 4816749 -192378683 - B1_Mus2 SINE Alu 0 147 2 5 621 3872 233 110 93 chr1 4816749 4817234 -192378198 - Lx7 LINE L1 -345 5535 5041 5 621 2546 65 64 3 chr1 4817234 4817560 -192377872 - L1_Mus2 LINE L1 0 6566 6221 5 621 3872 235 109 90 chr1 4817560 4818440 -192376992 - Lx7 LINE L1 -840 5040 4193 5 621 1370 98 22 0 chr1 4818936 4819119 -192376313 + B2_Mm1t SINE B2 2 188 -5 5 621 1257 62 0 0 chr1 4819123 4819268 -192376164 + B1_Mus2 SINE Alu 3 147 0 5 621 1498 105 0 5 chr1 4820759 4820951 -192374481 - B2_Mm2 SINE B2 -4 191 1 5 621 244 184 0 0 chr1 4822331 4822380 -192373052 - RMER1C Other Other -3 1339 1291 5 621 305 276 26 0 chr1 4822623 4822699 -192372733 - ID4_ SINE ID -4 79 2 5 621 292 89 54 0 chr1 4822746 4822802 -192372630 + (TCTCCC)n Simple_repeat Simple_repeat 3 61 0 5 621 686 176 75 8 chr1 4822803 4822923 -192372509 - B1_Mus2 SINE Alu -19 128 1 5 621 409 265 77 19 chr1 4823019 4823123 -192372309 + PB1D10 SINE Alu 1 110 -7 5 621 1134 41 14 20 chr1 4823209 4823357 -192372075 + B1_Mus1 SINE Alu 2 148 0 5 621 1264 54 0 0 chr1 4823559 4823706 -192371726 + B1_Mm SINE Alu 1 147 0 5 621 183 80 0 0 chr1 4823706 4823731 -192371701 + (A)n Simple_repeat Simple_repeat 1 25 0 5 621 1191 83 0 0 chr1 4824595 4824740 -192370692 + B1_Mus2 SINE Alu 3 147 0 5 621 797 186 27 14 chr1 4825942 4826089 -192369343 - B1_Mur3 SINE Alu 0 149 1 5 621 1272 68 0 0 chr1 4826117 4826264 -192369168 - B1_Mus2 SINE Alu 0 147 1 5 621 315 341 0 0 chr1 4826304 4826386 -192369046 + B3 SINE B2 89 170 -46 5 621 1411 70 15 65 chr1 4826747 4826946 -192368486 - B2_Mm2 SINE B2 -4 191 3 5 621 216 67 0 0 chr1 4827341 4827371 -192368061 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 5 621 205 171 0 0 chr1 4827473 4827514 -192367918 + T-rich Low_complexity Low_complexity 3 43 0 5 621 867 171 234 0 chr1 4827982 4828157 -192367275 + B3 SINE B2 1 216 0 5 621 688 301 57 13 chr1 4828332 4828561 -192366871 + B4A SINE B4 2 240 -52 5 621 839 51 244 8 chr1 4829273 4829392 -192366040 + B1_Mus2 SINE Alu 1 147 0 5 621 1448 70 27 0 chr1 4829671 4829858 -192365574 - B2_Mm1t SINE B2 0 193 2 5 621 408 268 69 21 chr1 4829862 4830007 -192365425 - L1MC1 LINE L1 -13 6320 6169 5 621 28 0 0 0 chr1 4830180 4830208 -192365224 + AT_rich Low_complexity Low_complexity 1 28 0 5 621 254 277 0 30 chr1 4830235 4830302 -192365130 - ID4_ SINE ID 0 83 19 5 621 388 185 113 37 chr1 4830318 4830428 -192365004 - PB1D10 SINE Alu -4 116 5 5 621 1546 83 5 0 chr1 4830630 4830822 -192364610 + B2_Mm1t SINE B2 1 193 0 5 621 30 27 0 0 chr1 4831341 4831378 -192364054 + AT_rich Low_complexity Low_complexity 1 37 0 6 621 557 190 132 0 chr1 4831436 4831557 -192363875 - B1_Mm SINE Alu 0 147 11 6 621 1272 81 6 0 chr1 4831555 4831729 -192363703 + B2_Mm1a SINE B2 17 191 -2 6 621 2024 100 33 61 chr1 4832176 4832506 -192362926 - ORR1A3 LTR MaLR 0 326 6 6 621 349 194 97 0 chr1 4832524 4832596 -192362836 + ID_B1 SINE B4 89 167 -57 6 621 1369 88 39 0 chr1 4832957 4833138 -192362294 - B2_Mm1a SINE B2 -5 188 1 6 621 423 118 0 0 chr1 4833164 4833232 -192362200 + Lx4A LINE L1 6986 7053 -5 6 621 21 0 0 0 chr1 4833240 4833261 -192362171 + AT_rich Low_complexity Low_complexity 1 21 0 6 621 256 304 12 71 chr1 4833270 4833355 -192362077 + B4A SINE B4 71 150 -142 6 621 272 276 0 0 chr1 4833301 4833359 -192362073 + PB1D10 SINE Alu 11 68 -49 6 621 921 61 113 8 chr1 4833376 4833509 -192361923 - B1_Mus2 SINE Alu 0 147 1 6 621 1206 62 0 0 chr1 4834714 4834860 -192360572 + B1_Mus1 SINE Alu 3 148 0 6 621 1010 47 62 0 chr1 4835792 4835921 -192359511 + B1_Mur3 SINE Alu 1 137 -12 6 621 180 0 0 0 chr1 4835923 4835943 -192359489 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 621 23 33 0 0 chr1 4836349 4836379 -192359053 + AT_rich Low_complexity Low_complexity 1 30 0 6 621 3318 41 5 0 chr1 4836872 4837266 -192358166 + MTA_Mm LTR MaLR 1 396 0 6 621 388 148 118 1 chr1 4837284 4837369 -192358063 + ORR1D2 LTR MaLR 282 405 -14 6 621 318 317 0 0 chr1 4837367 4837449 -192357983 - B1_Mus1 SINE Alu -63 85 4 6 621 376 221 16 66 chr1 4837483 4837604 -192357828 - PB1D10 SINE Alu 0 117 3 6 621 1164 55 0 0 chr1 4837981 4838127 -192357305 + B1_Mus2 SINE Alu 2 147 0 6 621 918 228 108 12 chr1 4838231 4838480 -192356952 + ORR1D2 LTR MaLR 1 273 -97 6 621 342 0 0 0 chr1 4838480 4838518 -192356914 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 6 621 578 156 193 0 chr1 4838518 4838627 -192356805 - B1_Mur1 SINE Alu -13 136 7 6 621 500 229 79 32 chr1 4838612 4838738 -192356694 + ORR1D2 LTR MaLR 239 370 0 6 621 1383 65 54 0 chr1 4838935 4839120 -192356312 + B2_Mm2 SINE B2 1 195 0 6 621 1152 62 7 0 chr1 4839179 4839325 -192356107 + B1_Mus1 SINE Alu 2 148 0 6 621 228 100 0 0 chr1 4839328 4839368 -192356064 + (A)n Simple_repeat Simple_repeat 1 40 0 6 621 520 43 0 0 chr1 4839369 4839439 -192355993 + L1Md_F2 LINE L1 6501 6570 -12 6 621 180 111 0 0 chr1 4839472 4839499 -192355933 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 6 621 243 0 0 0 chr1 4839852 4839879 -192355553 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 621 548 231 67 7 chr1 4840530 4840665 -192354767 + B3A SINE B2 4 146 -52 6 621 270 0 0 0 chr1 4840667 4840697 -192354735 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 621 353 244 84 12 chr1 4841172 4841255 -192354177 + MTE2a LTR MaLR 222 310 -69 6 621 415 313 88 57 chr1 4841604 4841763 -192353669 + RSINE1 SINE B4 2 165 0 6 621 267 303 37 0 chr1 4841769 4841878 -192353554 + L1M5 LINE L1 5463 5575 -604 6 621 2667 151 28 30 chr1 4841886 4842390 -192353042 - RLTR20B3 LTR ERVK 0 577 75 6 621 1869 149 82 31 chr1 4842561 4842950 -192352482 - MTC LTR MaLR -2 419 11 6 621 1054 76 7 20 chr1 4843183 4843331 -192352101 + B1_Mm SINE Alu 2 147 0 6 621 247 343 0 0 chr1 4843372 4843442 -192351990 + polypurine Low_complexity Low_complexity 2 71 0 6 621 257 269 8 0 chr1 4843762 4843781 -192351651 + ORR1B1-int LTR MaLR 628 647 -862 6 621 746 79 0 0 chr1 4843781 4843882 -192351550 + B1_Mus2 SINE Alu 1 101 -46 6 621 25 0 0 0 chr1 4844160 4844185 -192351247 + AT_rich Low_complexity Low_complexity 1 25 0 6 621 342 249 163 89 chr1 4844508 4844711 -192350721 - RLTR42 LTR ERVK 0 239 22 6 621 1266 174 236 31 chr1 4844897 4845190 -192350242 + RMER5 LTR ERV1 26 389 -145 6 621 1073 110 0 0 chr1 4845190 4845335 -192350097 - B1_Mus2 SINE Alu -1 146 2 6 621 1266 143 44 56 chr1 4845335 4845491 -192349941 + RMER5 LTR ERV1 390 534 0 6 621 355 244 235 0 chr1 4846279 4846394 -192349038 + ID_B1 SINE B4 81 222 -2 6 621 814 259 18 54 chr1 4846442 4846666 -192348766 + B4 SINE B4 1 216 -76 6 621 234 0 0 0 chr1 4846860 4846886 -192348546 + (T)n Simple_repeat Simple_repeat 1 26 0 6 621 1149 57 0 0 chr1 4846890 4847030 -192348402 - B1_Mus1 SINE Alu -6 142 3 6 621 22 35 0 0 chr1 4848061 4848090 -192347342 + GC_rich Low_complexity Low_complexity 1 29 0 6 621 201 39 0 0 chr1 4848123 4848149 -192347283 + (CCGGG)n Simple_repeat Simple_repeat 3 28 0 6 621 1053 72 58 0 chr1 4849367 4849506 -192345926 + B1_Mus1 SINE Alu 2 148 0 6 77 572 177 24 0 chr1 4849614 4849731 -192345701 - B1_Mus2 SINE Alu -17 131 8 6 77 246 245 46 101 chr1 4849642 4849751 -192345681 - MT2B LTR ERVL -344 257 155 6 622 455 216 101 31 chr1 4849808 4849937 -192345495 - B1_Mur1 SINE Alu -7 142 5 6 622 291 154 0 84 chr1 4849962 4850033 -192345399 - PB1D10 SINE Alu 0 117 53 6 622 25 51 0 0 chr1 4850131 4850170 -192345262 + AT_rich Low_complexity Low_complexity 1 39 0 6 622 1103 36 80 0 chr1 4850237 4850374 -192345058 - B1_Mus1 SINE Alu 0 148 1 6 622 555 232 104 19 chr1 4850538 4850783 -192344649 - L1MB7 LINE L1 -318 5862 5594 6 622 327 329 0 0 chr1 4851702 4851781 -192343651 + ID4_ SINE ID 5 83 0 6 622 1075 51 65 0 chr1 4851872 4852010 -192343422 + B1_Mus2 SINE Alu 1 147 0 6 622 722 205 127 0 chr1 4852039 4852205 -192343227 + B3A SINE B2 1 187 -11 6 622 221 254 16 48 chr1 4852274 4852336 -192343096 + MIRb SINE MIR 207 266 -2 6 622 1101 53 0 0 chr1 4852639 4852772 -192342660 + B1_Mus2 SINE Alu 2 134 -13 6 622 389 312 135 5 chr1 4852915 4853115 -192342317 - MER46C DNA MER2_type -19 319 94 6 622 1129 96 0 0 chr1 4853115 4853261 -192342171 + B1_Mus2 SINE Alu 2 147 0 6 622 225 0 0 0 chr1 4853261 4853286 -192342146 + (A)n Simple_repeat Simple_repeat 1 25 0 6 622 490 274 132 16 chr1 4853431 4853620 -192341812 - B3 SINE B2 -5 211 1 6 622 663 299 59 0 chr1 4853921 4854108 -192341324 + B3 SINE B2 5 202 -14 6 622 502 246 79 7 chr1 4854340 4854479 -192340953 + RSINE1 SINE B4 4 152 -13 6 622 1125 41 7 27 chr1 4854533 4854683 -192340749 + B1_Mus2 SINE Alu 1 147 0 6 622 291 309 31 21 chr1 4854712 4854808 -192340624 + Kanga1b DNA Tc2 173 269 -510 6 622 1158 48 14 0 chr1 4854876 4855021 -192340411 - B1_Mus1 SINE Alu 0 148 2 6 622 379 274 19 9 chr1 4855077 4855184 -192340248 - PB1D10 SINE Alu -8 109 2 6 622 320 288 131 41 chr1 4855294 4855439 -192339993 + Kanga1b DNA Tc2 480 637 -142 6 622 586 291 0 0 chr1 4855454 4855588 -192339844 - B1_Mur1 SINE Alu -15 134 1 6 622 299 287 35 44 chr1 4855680 4855793 -192339639 + B4 SINE B4 43 154 -138 6 622 532 203 20 89 chr1 4856011 4856133 -192339299 + B1_Mur1 SINE Alu 9 125 -24 6 622 1351 86 16 11 chr1 4856133 4856321 -192339111 - B2_Mm2 SINE B2 -6 189 1 6 622 532 203 20 89 chr1 4856321 4856344 -192339088 + B1_Mur1 SINE Alu 126 144 -5 6 622 1037 34 0 156 chr1 4856515 4856688 -192338744 - B1_Mus2 SINE Alu -1 146 1 6 622 1236 48 0 0 chr1 4856805 4856952 -192338480 - B1_Mm SINE Alu 0 147 1 6 622 384 22 0 0 chr1 4857375 4857420 -192338012 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 622 2158 155 119 2 chr1 4857720 4858133 -192337299 - RMER6B LTR ERVK 0 461 1 6 622 437 225 141 86 chr1 4858456 4858846 -192336586 + Charlie4a DNA MER1_type 27 499 -9 6 622 490 229 240 6 chr1 4859323 4859494 -192335938 - B3 SINE B2 -5 211 1 6 622 275 352 11 0 chr1 4859889 4859977 -192335455 - B1F1 SINE Alu -59 90 2 6 622 401 265 47 47 chr1 4860009 4860116 -192335316 - PB1D10 SINE Alu -9 108 2 6 622 495 320 11 70 chr1 4860116 4860207 -192335225 - ID SINE ID -142 82 3 6 622 248 312 0 36 chr1 4860344 4860427 -192335005 - ID4 SINE ID -2 81 2 6 622 258 232 14 0 chr1 4860443 4860512 -192334920 - L1MB7 LINE L1 -9 6175 6106 6 622 1736 220 75 18 chr1 4860512 4860897 -192334535 + MTD LTR MaLR 3 409 -10 6 622 718 224 40 0 chr1 4861030 4861204 -192334228 + Lx7 LINE L1 4431 4611 -1269 6 622 1155 166 17 15 chr1 4861207 4861421 -192334011 - ORR1C1 LTR MaLR 0 394 175 6 622 2579 68 55 0 chr1 4861428 4861813 -192333619 - BGLII LTR ERVK 0 421 16 6 622 3631 193 91 107 chr1 4861814 4862229 -192333203 + Lx7 LINE L1 4682 5101 -779 6 622 1459 43 26 21 chr1 4862229 4862420 -192333012 + B2_Mm1t SINE B2 2 193 0 6 622 3631 193 91 107 chr1 4862420 4862439 -192332993 + Lx7 LINE L1 5102 5102 -778 6 622 813 102 16 25 chr1 4862439 4862560 -192332872 + PB1D9 SINE Alu 1 120 0 6 622 5012 193 91 107 chr1 4862560 4863219 -192332213 + Lx7 LINE L1 5102 5756 -1940 6 622 3377 40 0 0 chr1 4863219 4863615 -192331817 + MTA_Mm LTR MaLR 1 396 0 6 622 5012 239 87 65 chr1 4863615 4864614 -192330818 + Lx7 LINE L1 5757 6771 -925 6 622 1015 90 28 7 chr1 4864614 4864759 -192330673 - B1_Mus1 SINE Alu 0 148 1 6 622 5012 239 87 65 chr1 4864759 4865303 -192330129 + Lx7 LINE L1 6772 7338 -358 6 622 24 32 0 0 chr1 4865445 4865476 -192329956 + AT_rich Low_complexity Low_complexity 1 31 0 6 622 1348 66 22 0 chr1 4865779 4865960 -192329472 - B2_Mm1t SINE B2 -8 185 1 6 622 1126 68 0 33 chr1 4866062 4866213 -192329219 - B1_Mus2 SINE Alu 0 147 2 6 622 233 225 82 59 chr1 4866886 4866971 -192328461 - Charlie19a DNA Charlie -23 363 277 6 622 1273 106 21 0 chr1 4867308 4867496 -192327936 - B2_Mm2 SINE B2 -3 192 1 7 622 950 50 0 0 chr1 4867556 4867677 -192327755 + B1_Mm SINE Alu 27 147 0 7 622 195 69 0 0 chr1 4867680 4867709 -192327723 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 622 824 131 183 78 chr1 4868586 4868777 -192326655 - B3 SINE B2 -4 212 2 7 622 668 45 11 0 chr1 4868777 4868865 -192326567 + (TTCTC)n Simple_repeat Simple_repeat 5 93 0 7 622 441 156 0 0 chr1 4868865 4868942 -192326490 + CT-rich Low_complexity Low_complexity 3 79 0 7 622 266 265 152 29 chr1 4869048 4869153 -192326279 - PB1D9 SINE Alu -1 119 2 7 622 348 148 0 0 chr1 4870136 4870197 -192325235 + (TCC)n Simple_repeat Simple_repeat 3 63 0 7 622 1500 213 131 14 chr1 4870835 4871202 -192324230 + MTD LTR MaLR 10 419 0 7 622 532 298 16 0 chr1 4871415 4871539 -192323893 - ID_B1 SINE B4 0 224 99 7 622 1040 205 133 26 chr1 4871807 4872161 -192323271 - RMER10A LTR ERVL 0 442 25 7 622 726 38 418 15 chr1 4872340 4872474 -192322958 - B2_Mm1t SINE B2 -5 188 1 7 622 339 275 117 21 chr1 4872645 4872790 -192322642 - L1MC4 LINE L1 -990 7052 6894 7 622 1683 206 31 67 chr1 4872822 4873238 -192322194 - MTD LTR MaLR -12 407 7 7 622 4149 136 39 20 chr1 4873238 4873980 -192321452 - RMER6A LTR ERVK 0 756 1 7 622 226 116 41 55 chr1 4874233 4874306 -192321126 + T-rich Low_complexity Low_complexity 4 75 0 7 622 1175 28 7 7 chr1 4874307 4874453 -192320979 - B1_Mus2 SINE Alu -1 146 1 7 622 2129 137 16 0 chr1 4874796 4875118 -192320314 - ORR1A2 LTR MaLR 0 327 1 7 622 402 21 0 0 chr1 4875327 4875374 -192320058 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 7 622 243 79 0 0 chr1 4875392 4875430 -192320002 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 7 622 525 238 98 0 chr1 4875430 4875552 -192319880 - B1_Mur1 SINE Alu -11 138 5 7 622 342 244 122 0 chr1 4875629 4875719 -192319713 - PB1D10 SINE Alu -1 116 16 7 622 441 214 59 97 chr1 4876228 4876259 -192319173 + CYRA11_Mm Unknown Y-chromosome 142 165 -452 7 622 968 118 6 58 chr1 4876259 4876430 -192319002 - URR1A DNA MER1_type -3 223 62 7 622 393 257 97 44 chr1 4876993 4877107 -192318325 + PB1D9 SINE Alu 1 120 0 7 622 218 53 0 73 chr1 4877121 4877162 -192318270 + (A)n Simple_repeat Simple_repeat 1 38 0 7 622 1139 240 49 8 chr1 4877193 4877457 -192317975 - MTD LTR MaLR -127 292 18 7 622 25 51 0 0 chr1 4877660 4877699 -192317733 + AT_rich Low_complexity Low_complexity 1 39 0 7 622 948 225 80 5 chr1 4878136 4878337 -192317095 + ID_B1 SINE B4 1 216 -8 7 622 874 67 281 20 chr1 4878703 4878856 -192316576 - B2_Mm2 SINE B2 0 195 3 7 622 342 190 75 0 chr1 4879350 4879441 -192315991 + B1_Mus1 SINE Alu 4 99 -18 7 622 25 51 0 0 chr1 4880021 4880060 -192315372 + AT_rich Low_complexity Low_complexity 1 39 0 7 622 333 0 0 0 chr1 4881042 4881079 -192314353 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 622 1173 37 0 0 chr1 4881080 4881215 -192314217 - B1_Mus1 SINE Alu -12 136 2 7 622 1352 88 39 0 chr1 4882422 4882604 -192312828 + B2_Mm2 SINE B2 1 189 -6 7 622 312 313 62 72 chr1 4883075 4883268 -192312164 - L1MC4 LINE L1 -1117 6925 6735 7 622 774 67 0 0 chr1 4884076 4884181 -192311251 + (TG)n Simple_repeat Simple_repeat 1 105 0 7 622 691 279 54 0 chr1 4884360 4884564 -192310868 - B3 SINE B2 0 216 2 7 622 768 164 29 29 chr1 4884579 4884590 -192310842 - B1_Mus2 SINE Alu -1 146 136 7 622 189 94 0 0 chr1 4884590 4884622 -192310810 + (TTGG)n Simple_repeat Simple_repeat 1 32 0 7 622 768 164 29 29 chr1 4884622 4884748 -192310684 - B1_Mus2 SINE Alu -12 135 10 7 622 1141 44 0 0 chr1 4887682 4887818 -192307614 + B1_Mus2 SINE Alu 2 137 -10 7 622 296 143 28 49 chr1 4887990 4888077 -192307355 + ORR1B1 LTR MaLR 198 344 -50 7 622 281 264 115 0 chr1 4888068 4888155 -192307277 + B3 SINE B2 109 205 -11 7 622 617 209 43 14 chr1 4888384 4888525 -192306907 + ORR1D1 LTR MaLR 6 150 -224 7 622 648 237 151 7 chr1 4889113 4889327 -192306105 + ORR1D1 LTR MaLR 123 374 0 7 622 820 241 20 70 chr1 4889567 4889768 -192305664 + B3A SINE B2 2 192 -6 7 622 1795 145 46 3 chr1 4891160 4891465 -192303967 + ORR1A2 LTR MaLR 2 319 -8 7 622 1287 41 14 0 chr1 4892147 4892293 -192303139 - B1_Mus1 SINE Alu 0 148 1 7 622 231 81 0 0 chr1 4892360 4892397 -192303035 - L1Md_T LINE L1 -11 6571 6535 7 622 200 200 0 0 chr1 4892480 4892515 -192302917 + GA-rich Low_complexity Low_complexity 2 36 0 7 622 430 297 84 93 chr1 4892676 4893021 -192302411 - L1MB1 LINE L1 -258 5910 5569 7 622 389 293 8 57 chr1 4893086 4893209 -192302223 - PB1D10 SINE Alu 0 117 1 7 622 1536 168 13 59 chr1 4893409 4893550 -192301882 - RLTR14 LTR ERV1 0 382 238 7 622 207 0 0 0 chr1 4893550 4893573 -192301859 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 622 1536 168 13 59 chr1 4893573 4893735 -192301697 - RLTR14 LTR ERV1 -145 237 93 7 622 237 33 0 0 chr1 4893735 4893765 -192301667 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 7 622 1231 62 0 0 chr1 4893765 4893910 -192301522 - B1_Mus2 SINE Alu 0 147 3 7 622 1010 114 82 24 chr1 4893977 4894147 -192301285 - B2_Mm2 SINE B2 -14 181 2 7 622 182 37 0 36 chr1 4894162 4894190 -192301242 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 7 622 665 323 89 26 chr1 4894222 4894492 -192300940 - B4A SINE B4 0 292 6 7 622 434 296 25 159 chr1 4894525 4894726 -192300706 - RMER12 LTR ERVK -4 1318 1145 7 622 4405 205 105 21 chr1 4894828 4895175 -192300257 - RMER12 LTR ERVK -134 1188 769 7 622 189 74 0 0 chr1 4895175 4895202 -192300230 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 7 622 4405 205 105 21 chr1 4895202 4895950 -192299482 - RMER12 LTR ERVK -554 768 2 7 622 591 275 86 20 chr1 4895976 4896277 -192299155 - L1MB1 LINE L1 -925 5215 4895 7 622 796 283 62 82 chr1 4896287 4896668 -192298764 + MT2B LTR ERVL 1 474 -127 7 622 1752 217 179 10 chr1 4896728 4897207 -192298225 + RMER21B LTR ERV1 8 567 -275 7 622 391 169 84 0 chr1 4897370 4897441 -192297991 - B1_Mur4 SINE Alu -70 80 4 7 622 226 296 0 47 chr1 4897441 4897455 -192297977 - MT2B LTR ERVL -367 234 154 7 622 468 0 0 0 chr1 4899857 4899909 -192295523 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 622 792 83 0 0 chr1 4899927 4900036 -192295396 + (GA)n Simple_repeat Simple_repeat 2 110 0 7 622 246 233 33 0 chr1 4901336 4901396 -192294036 + ID4 SINE ID 22 83 0 7 622 4623 189 69 8 chr1 4901438 4902292 -192293140 + RMER13B LTR ERVK 3 908 0 7 622 1215 62 0 14 chr1 4902932 4903080 -192292352 - B1_Mus1 SINE Alu 0 148 3 7 622 186 118 0 0 chr1 4903510 4903544 -192291888 + (T)n Simple_repeat Simple_repeat 1 34 0 7 622 1186 191 29 0 chr1 4903859 4904068 -192291364 + B3 SINE B2 2 216 0 7 622 21 0 0 0 chr1 4904068 4904089 -192291343 + AT_rich Low_complexity Low_complexity 1 21 0 7 622 243 234 12 38 chr1 4904098 4904178 -192291254 + MLT1C LTR MaLR 352 429 -38 7 622 1459 23 0 6 chr1 4904209 4904383 -192291049 + B2_Mm1a SINE B2 1 173 -20 7 622 576 0 0 0 chr1 4904383 4904447 -192290985 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 7 622 334 240 40 97 chr1 4904891 4904986 -192290446 - RMER17C LTR ERVK -245 165 80 7 622 717 88 0 0 chr1 4904986 4905088 -192290344 + (GA)n Simple_repeat Simple_repeat 1 102 0 7 622 334 240 40 97 chr1 4905088 4905167 -192290265 - RMER17C LTR ERVK -331 79 1 7 622 959 260 14 9 chr1 4905954 4906164 -192289268 + B3 SINE B2 1 211 -5 7 622 2296 78 31 6 chr1 4906164 4906576 -192288856 + RLTR1B LTR ERV1 24 512 0 7 622 760 189 193 6 chr1 4907213 4907394 -192288038 + B3 SINE B2 2 216 0 7 622 247 270 0 13 chr1 4907414 4907489 -192287943 + B4A SINE B4 82 155 -137 7 622 329 280 236 20 chr1 4907567 4907846 -192287586 - L1M4 LINE L1 -579 5599 5260 7 622 906 197 36 52 chr1 4907848 4908041 -192287391 - B3 SINE B2 -5 211 22 7 622 244 235 59 0 chr1 4908320 4908371 -192287061 - tRNA-Ala-GCY_ tRNA tRNA -21 54 1 7 622 542 86 12 0 chr1 4908545 4908626 -192286806 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 622 265 283 135 80 chr1 4909224 4909331 -192286101 - Lx8 LINE L1 -17 7456 7350 7 622 2335 94 216 32 chr1 4909331 4909738 -192285694 + RLTR45 LTR ERVK 1 482 0 7 622 265 283 135 80 chr1 4909738 4909830 -192285602 - Lx8 LINE L1 -124 7349 7246 7 622 862 134 49 14 chr1 4910489 4910633 -192284799 - B1_Mur3 SINE Alu 0 149 1 7 622 250 294 48 27 chr1 4910679 4910826 -192284606 - L1M5 LINE L1 -813 5333 5184 7 622 330 359 35 108 chr1 4910834 4911037 -192284395 - B4 SINE B4 -2 290 103 7 622 1786 26 0 0 chr1 4911075 4911267 -192284165 - B2_Mm1a SINE B2 0 193 2 7 622 191 114 0 28 chr1 4911282 4911318 -192284114 + (TTC)n Simple_repeat Simple_repeat 2 36 0 7 622 737 168 293 0 chr1 4911382 4911549 -192283883 - B3 SINE B2 0 216 1 7 622 482 221 19 0 chr1 4911608 4911712 -192283720 + Lx5 LINE L1 6604 6709 -341 7 622 1754 199 35 85 chr1 4911712 4912209 -192283223 + RLTR1B LTR ERV1 1 512 0 7 622 582 235 239 21 chr1 4912209 4912452 -192282980 + Lx6 LINE L1 7089 7384 -76 7 622 615 117 0 0 chr1 4912479 4912573 -192282859 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 622 815 183 233 6 chr1 4912675 4912851 -192282581 + B3 SINE B2 1 216 0 7 622 435 211 25 76 chr1 4912855 4912979 -192282453 - PB1 SINE Alu -11 138 2 7 622 522 281 65 22 chr1 4913058 4913196 -192282236 + RSINE1 SINE B4 20 163 -2 7 622 231 261 14 42 chr1 4913780 4913852 -192281580 + ID_B1 SINE B4 126 195 -29 8 622 1088 65 72 0 chr1 4914885 4915024 -192280408 - B1_Mur4 SINE Alu 0 150 2 8 622 261 83 0 0 chr1 4915061 4915097 -192280335 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 622 198 0 0 0 chr1 4915169 4915191 -192280241 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 8 622 336 172 125 0 chr1 4915191 4915255 -192280177 - PB1 SINE Alu -12 115 44 8 622 206 162 27 0 chr1 4916646 4916683 -192278749 + GA-rich Low_complexity Low_complexity 2 39 0 8 622 2289 117 72 21 chr1 4917426 4917801 -192277631 + ORR1B1 LTR MaLR 1 394 0 8 622 3392 43 10 2 chr1 4918186 4918579 -192276853 + MTA_Mm LTR MaLR 1 396 0 8 622 187 122 41 0 chr1 4918742 4918791 -192276641 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 8 622 246 62 0 0 chr1 4919252 4919284 -192276148 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 622 30 45 0 0 chr1 4919388 4919432 -192276000 + AT_rich Low_complexity Low_complexity 1 44 0 8 622 605 93 41 10 chr1 4919506 4919604 -192275828 + Lx LINE L1 6550 6650 -4 8 622 25 0 0 0 chr1 4919738 4919763 -192275669 + AT_rich Low_complexity Low_complexity 1 25 0 8 622 843 136 0 0 chr1 4919786 4919911 -192275521 - B1_Mur3 SINE Alu -6 143 19 8 622 279 304 107 39 chr1 4919946 4920124 -192275308 - Helitron1Nb_Mam RC Helitron -565 551 362 8 622 191 176 0 38 chr1 4920769 4920822 -192274610 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 8 622 520 281 14 21 chr1 4920938 4921080 -192274352 - B3A SINE B2 0 198 58 8 622 863 87 0 8 chr1 4921300 4921427 -192274005 + (TA)n Simple_repeat Simple_repeat 1 126 0 8 622 737 251 75 17 chr1 4921427 4921598 -192273834 - B3 SINE B2 -18 198 18 8 622 1943 161 9 44 chr1 4921598 4921937 -192273495 - ORR1C2 LTR MaLR -1 383 57 8 622 3179 28 5 64 chr1 4921937 4922325 -192273107 + RLTR10B2 LTR ERVK 1 365 0 8 622 1330 56 0 0 chr1 4922335 4922497 -192272935 + RLTR10-int LTR ERVK 41 202 -1785 8 622 230 271 0 0 chr1 4922497 4922545 -192272887 + RLTR27 LTR ERVK 223 270 -39 8 622 310 139 0 0 chr1 4922545 4922588 -192272844 + RLTR10-int LTR ERVK 220 262 -7319 8 622 1257 102 124 0 chr1 4922587 4922773 -192272659 + IAP-d-int LTR ERVK 5046 5254 -1288 8 622 4390 106 16 1 chr1 4922774 4923451 -192271981 + IAPEY3-int LTR ERVK 6965 7680 0 8 622 793 40 10 0 chr1 4923451 4923551 -192271881 + RLTR10B2 LTR ERVK 1 101 -264 8 622 1110 30 0 0 chr1 4923542 4923677 -192271755 + RLTR10B2 LTR ERVK 214 348 -17 8 622 304 164 36 0 chr1 4923678 4923733 -192271699 - ORR1C2 LTR MaLR -323 61 5 8 622 812 248 154 152 chr1 4924063 4924568 -192270864 + RLTR18B LTR ERVK 4 509 -3 8 622 355 228 19 51 chr1 4924759 4924916 -192270516 + (TG)n Simple_repeat Simple_repeat 1 152 0 8 622 1166 171 243 41 chr1 4925107 4925448 -192269984 + RMER17C LTR ERVK 1 410 0 8 622 827 170 50 0 chr1 4925565 4925706 -192269726 - B1_Mur2 SINE Alu 0 149 2 8 622 195 190 0 0 chr1 4926490 4926548 -192268884 + T-rich Low_complexity Low_complexity 1 58 0 8 622 1053 167 11 27 chr1 4926661 4926846 -192268586 + B2_Mm2 SINE B2 3 184 -11 8 622 846 276 14 28 chr1 4927253 4927469 -192267963 + ID_B1 SINE B4 1 213 -11 8 622 180 0 0 0 chr1 4927469 4927489 -192267943 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 622 1010 189 11 11 chr1 4927983 4928170 -192267262 + B2_Mm2 SINE B2 2 188 -7 8 622 843 64 0 0 chr1 4930703 4930813 -192264619 + (GAAAA)n Simple_repeat Simple_repeat 1 110 0 8 622 1210 68 0 13 chr1 4930816 4930954 -192264478 + B1_Mus1 SINE Alu 1 138 -10 8 622 420 20 0 0 chr1 4930954 4931003 -192264429 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 622 22 0 0 0 chr1 4931231 4931253 -192264179 + AT_rich Low_complexity Low_complexity 1 22 0 8 622 809 189 0 51 chr1 4931395 4931489 -192263943 + B1_Mur1 SINE Alu 2 94 -55 8 622 2727 184 32 18 chr1 4931489 4931896 -192263536 + RLTR16 LTR ERVK 1 414 -91 8 622 405 58 0 0 chr1 4931896 4931948 -192263484 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 622 2727 184 32 18 chr1 4931948 4932038 -192263394 + RLTR16 LTR ERVK 415 505 0 8 622 809 189 0 51 chr1 4932038 4932099 -192263333 + B1_Mur1 SINE Alu 95 149 0 8 622 372 290 37 0 chr1 4932196 4932303 -192263129 + PB1D9 SINE Alu 2 112 -8 8 622 183 224 98 39 chr1 4932621 4932672 -192262760 + MIR SINE MIR 51 104 -104 8 622 531 198 13 4 chr1 4932750 4932860 -192262572 + ORR1D1 LTR MaLR 1 110 -260 8 622 3153 227 94 53 chr1 4932860 4933435 -192261997 + RMER1C Other Other 405 1037 -305 8 622 1096 117 116 6 chr1 4933435 4933607 -192261825 - B2_Mm2 SINE B2 -4 191 1 8 622 3153 227 94 53 chr1 4933607 4933867 -192261565 + RMER1C Other Other 1038 1275 -67 8 622 1518 201 29 41 chr1 4933868 4934000 -192261432 + ORR1D1 LTR MaLR 37 169 -205 8 622 225 0 0 0 chr1 4934000 4934025 -192261407 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 622 1518 201 29 41 chr1 4934025 4934217 -192261215 + ORR1D1 LTR MaLR 170 360 -14 8 622 3649 23 5 0 chr1 4934217 4934611 -192260821 + MTA_Mm LTR MaLR 1 396 0 8 622 1518 201 29 41 chr1 4934611 4934627 -192260805 + ORR1D1 LTR MaLR 361 374 0 8 622 728 270 57 6 chr1 4934739 4934914 -192260518 + B3 SINE B2 3 186 -30 8 622 234 0 0 0 chr1 4934914 4934940 -192260492 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 622 852 288 50 44 chr1 4935352 4935672 -192259760 - MER68 LTR ERVL -240 323 2 8 622 925 170 0 20 chr1 4935694 4935844 -192259588 + B1_Mur2 SINE Alu 3 149 0 8 622 603 220 255 59 chr1 4935928 4936218 -192259214 + L1MEf LINE L1 2105 2510 -4592 8 622 918 85 6 25 chr1 4936223 4936380 -192259052 + (TCTA)n Simple_repeat Simple_repeat 2 155 0 8 622 253 244 160 61 chr1 4936426 4936557 -192258875 + L1MEf LINE L1 2548 2691 -4643 8 622 348 111 0 0 chr1 4936717 4936771 -192258661 + (TCC)n Simple_repeat Simple_repeat 3 56 0 8 622 435 226 49 0 chr1 4936771 4936873 -192258559 - B1_Mur2 SINE Alu -5 144 38 8 622 35512 74 12 27 chr1 4937240 4940906 -192254526 + L1Md_F3 LINE L1 498 4101 -1782 8 622 1658 47 0 0 chr1 4940906 4941096 -192254336 - B2_Mm1a SINE B2 -3 190 1 8 622 35512 42 7 3 chr1 4941096 4942582 -192252850 + L1Md_F3 LINE L1 4102 5586 -297 8 622 8499 49 2 1 chr1 4942582 4943565 -192251867 + L1Md_F3 LINE L1 5587 6570 -14 8 622 228 86 0 0 chr1 4943602 4943637 -192251795 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 622 380 240 10 68 chr1 4943680 4943783 -192251649 + PB1D10 SINE Alu 13 109 -8 8 622 594 252 44 0 chr1 4944126 4944261 -192251171 - B1_Mur3 SINE Alu 0 149 9 8 622 383 250 102 0 chr1 4944303 4944391 -192251041 - B3 SINE B2 -29 187 91 8 622 765 329 150 5 chr1 4945073 4945492 -192249940 + Lx8 LINE L1 6805 7284 -189 8 622 476 176 28 10 chr1 4945493 4945597 -192249835 - MTC LTR MaLR 0 421 309 8 622 384 143 57 0 chr1 4945581 4945651 -192249781 - MTC LTR MaLR -347 74 1 8 622 1035 277 55 48 chr1 4945873 4946252 -192249180 - RLTR14 LTR ERV1 0 382 1 8 622 789 286 96 41 chr1 4946254 4946818 -192248614 + L1MB7 LINE L1 3188 3782 -2364 8 622 1928 101 103 13 chr1 4946848 4947150 -192248282 - ORR1A4 LTR MaLR 0 329 1 8 622 377 262 47 0 chr1 4947272 4947421 -192248011 + L1MB7 LINE L1 5124 5279 -867 8 622 4888 88 176 0 chr1 4947433 4948239 -192247193 + L1VL2 LINE L1 58 1005 -5330 8 622 1036 101 0 51 chr1 4948239 4948395 -192247037 + B1_Mus1 SINE Alu 1 148 0 8 622 189 0 0 0 chr1 4948395 4948416 -192247016 + (A)n Simple_repeat Simple_repeat 1 21 0 8 622 13038 82 23 6 chr1 4948416 4950433 -192244999 + MusHAL1 LINE L1 34 2085 -627 8 622 225 0 0 0 chr1 4951026 4951051 -192244381 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 622 1268 294 79 37 chr1 4951057 4951583 -192243849 + L1MB7 LINE L1 5328 5867 -317 8 622 1655 187 27 29 chr1 4951583 4951958 -192243474 + ORR1D1 LTR MaLR 1 374 0 8 622 1268 294 79 37 chr1 4951958 4952212 -192243220 + L1MB7 LINE L1 5868 6141 -43 8 622 596 230 42 79 chr1 4952212 4952377 -192243055 + RSINE1 SINE B4 3 161 -4 8 622 275 314 51 63 chr1 4952430 4952685 -192242747 + L1MB7 LINE L1 5836 6087 -97 8 622 483 288 79 21 chr1 4952703 4952937 -192242495 + ORR1E LTR MaLR 1 242 -128 8 622 400 256 92 43 chr1 4953110 4953273 -192242159 - MLT1C LTR MaLR -255 212 42 8 622 1436 256 82 13 chr1 4953301 4953501 -192241931 - MTD LTR MaLR 0 419 211 8 622 1171 86 56 22 chr1 4953501 4953680 -192241752 - B2_Mm2 SINE B2 -9 186 2 8 622 1436 256 82 13 chr1 4953680 4953871 -192241561 - MTD LTR MaLR -209 210 1 8 622 363 255 103 0 chr1 4953899 4954044 -192241388 - Tigger7 DNA MER2_type -66 2425 2266 8 622 520 284 47 7 chr1 4954153 4954302 -192241130 - Tigger7 DNA MER2_type -2335 156 2 8 622 253 255 0 0 chr1 4954320 4954367 -192241065 + MTE2a LTR MaLR 6 52 -327 8 622 2294 166 8 3 chr1 4954371 4954752 -192240680 - ORR1B1 LTR MaLR -7 387 5 8 622 1344 215 130 3 chr1 4954957 4955288 -192240144 + ORR1D1 LTR MaLR 1 373 -1 8 622 1029 208 93 4 chr1 4955290 4955527 -192239905 + ORR1D1-int LTR MaLR 2 259 -1111 8 622 1305 248 15 4 chr1 4955549 4955820 -192239612 + ORR1D1-int LTR MaLR 529 802 -568 8 622 183 344 97 12 chr1 4955841 4956006 -192239426 - MIRc SINE MIR -6 262 84 8 622 573 240 78 0 chr1 4956211 4956340 -192239092 - B1_Mur3 SINE Alu -10 139 1 8 622 676 231 8 0 chr1 4956749 4956879 -192238553 + RSINE1 SINE B4 2 132 -33 8 622 355 301 69 16 chr1 4957813 4957853 -192237579 + L1MC5 LINE L1 6875 6915 -1046 8 622 928 249 25 0 chr1 4957853 4958054 -192237378 + B3 SINE B2 1 206 -10 8 622 355 301 69 16 chr1 4958054 4958202 -192237230 + L1MC5 LINE L1 6916 7072 -889 8 622 698 278 153 31 chr1 4958977 4959299 -192236133 + ORR1D1 LTR MaLR 3 379 0 8 622 331 255 49 0 chr1 4959368 4959467 -192235965 - ID4_ SINE ID -39 113 7 8 622 320 314 48 19 chr1 4962305 4962409 -192233023 + PB1D10 SINE Alu 3 109 -8 8 622 6542 84 1 15 chr1 4962759 4963716 -192231716 - L1_Mus2 LINE L1 -387 5496 4553 8 622 6463 60 2 2 chr1 4963716 4964629 -192230803 + L1_Mus2 LINE L1 5528 6440 -126 8 622 320 354 54 36 chr1 4965285 4965508 -192229924 + L1M5 LINE L1 5433 5659 -514 8 622 1304 255 91 71 chr1 4965878 4966102 -192229330 - MTD LTR MaLR -2 417 193 8 622 789 175 217 0 chr1 4966102 4966268 -192229164 - B3 SINE B2 -14 202 1 8 622 1304 255 91 71 chr1 4966268 4966452 -192228980 - MTD LTR MaLR -227 192 1 8 622 318 95 0 0 chr1 4967010 4967052 -192228380 + HAL1-3A_ME LINE L1 1977 2018 -840 8 622 415 132 22 0 chr1 4967087 4967178 -192228254 + (CA)n Simple_repeat Simple_repeat 2 94 0 8 622 414 0 0 0 chr1 4967179 4967225 -192228207 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 622 17730 151 87 14 chr1 4968701 4974378 -192221054 - L1_Mus1 LINE L1 0 6567 377 8 622 806 230 278 3 chr1 4974409 4974793 -192220639 - Lx8 LINE L1 -774 6699 6211 8 622 3082 49 35 5 chr1 4974822 4975249 -192220183 - MusHAL1 LINE L1 -6 2706 2267 8 622 222 37 0 0 chr1 4975249 4975276 -192220156 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 622 2186 126 0 0 chr1 4975294 4975603 -192219829 + RLTR27 LTR ERVK 1 309 0 9 622 343 74 9 0 chr1 4975614 4975667 -192219765 + RLTR10-int LTR ERVK 163 267 -7314 9 622 616 243 49 16 chr1 4975703 4975887 -192219545 + RLTR10-int LTR ERVK 655 844 -1143 9 622 407 364 4 4 chr1 4976282 4976533 -192218899 + IAP-d-int LTR ERVK 705 955 -5587 9 622 764 242 86 61 chr1 4976556 4976917 -192218515 + MMERVK10C-int LTR ERVK 5239 5608 -1213 9 622 718 311 66 45 chr1 4976938 4977558 -192217874 + MMERVK10C-int LTR ERVK 6437 7069 -512 9 622 1392 158 4 19 chr1 4977692 4977957 -192217475 + MMERVK10C-int LTR ERVK 7321 7581 0 9 622 2290 111 0 0 chr1 4977957 4978264 -192217168 + RLTR27 LTR ERVK 1 307 -2 9 622 1062 82 0 0 chr1 4978264 4978398 -192217034 - B1_Mm SINE Alu -11 136 3 9 622 501 26 13 26 chr1 4978398 4978476 -192216956 - MusHAL1 LINE L1 -433 2279 2203 9 622 691 272 81 43 chr1 4978553 4978764 -192216668 - ID_B1 SINE B4 -3 221 3 9 622 1330 278 33 20 chr1 4979482 4979879 -192215553 - MTD LTR MaLR 0 419 18 9 622 491 289 71 43 chr1 4979908 4980118 -192215314 - B3 SINE B2 0 216 1 9 622 659 212 80 0 chr1 4980146 4980283 -192215149 - B1_Mur1 SINE Alu -1 148 1 9 623 2846 154 18 25 chr1 4980931 4981497 -192213935 + Lx6 LINE L1 4434 4995 -885 9 623 1373 169 125 7 chr1 4981500 4981788 -192213644 + BGLII_A LTR ERVK 1 323 -122 9 623 1594 147 7 22 chr1 4981788 4982060 -192213372 + RLTR17 LTR ERVK 1 268 -424 9 623 445 102 0 33 chr1 4982096 4982187 -192213245 - L1Md_F2 LINE L1 0 6582 6495 9 623 14694 231 59 41 chr1 4983013 4988349 -192207083 + MYSERV6-int LTR ERVK 5 4615 -4344 9 623 1107 56 7 27 chr1 4988349 4988497 -192206935 - B1_Mus2 SINE Alu 0 147 3 9 623 5355 209 119 91 chr1 4988497 4989429 -192206003 + MYSERV6-int LTR ERVK 1332 2325 -1 9 623 2085 150 93 0 chr1 4989430 4989837 -192205595 + BGLII_A LTR ERVK 1 445 0 9 623 4315 159 19 28 chr1 4989841 4990144 -192205288 + Lx6 LINE L1 4998 5292 -588 9 623 869 151 0 21 chr1 4990144 4990286 -192205146 + B1_Mur3 SINE Alu 5 143 -6 9 623 6406 172 26 30 chr1 4990286 4990996 -192204436 + Lx6 LINE L1 5293 6029 -1431 9 623 2269 105 12 0 chr1 4990996 4991319 -192204113 + ORR1A2 LTR MaLR 1 327 0 9 623 6406 234 61 40 chr1 4991319 4991930 -192203502 + Lx6 LINE L1 6030 6609 -851 9 623 2345 194 80 0 chr1 4991930 4992415 -192203017 + RLTR28 LTR ERVL 1 524 0 9 623 6406 234 61 40 chr1 4992415 4993220 -192202212 + Lx6 LINE L1 6610 7454 -6 9 623 261 0 0 0 chr1 4993220 4993249 -192202183 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 623 1269 257 42 63 chr1 4993354 4993782 -192201650 - MTD LTR MaLR 0 419 1 9 623 340 281 88 88 chr1 4994226 4994243 -192201189 - ID_B1 SINE B4 0 224 214 9 623 708 98 0 0 chr1 4994243 4994345 -192201087 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 9 623 573 183 154 0 chr1 4994348 4994452 -192200980 - B1_Mur2 SINE Alu -11 138 19 9 623 1071 203 153 4 chr1 4994494 4994756 -192200676 + MTD LTR MaLR 111 411 -8 9 623 827 0 24 31 chr1 4995477 4995604 -192199828 + (GAGAA)n Simple_repeat Simple_repeat 5 130 0 9 623 478 294 100 70 chr1 4995642 4995971 -192199461 - ORR1E LTR MaLR 0 359 21 9 623 626 23 11 33 chr1 4996217 4996307 -192199125 - L1_Mus4 LINE L1 -758 5878 5791 9 623 1011 122 29 11 chr1 4996307 4996481 -192198951 + L1_Mus4 LINE L1 6460 6636 0 9 623 243 122 0 0 chr1 4996736 4996785 -192198647 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 9 623 618 271 123 0 chr1 4997102 4997118 -192198314 - B3 SINE B2 0 216 200 9 623 1697 208 35 11 chr1 4997118 4997493 -192197939 + ORR1C2 LTR MaLR 1 384 0 9 623 618 271 123 0 chr1 4997493 4997646 -192197786 - B3 SINE B2 -17 199 27 9 623 2061 102 42 54 chr1 4998146 4998422 -192197010 + ORR1A2 LTR MaLR 1 274 -53 9 623 1202 36 0 0 chr1 4998422 4998560 -192196872 + B1_Mm SINE Alu 1 138 -9 9 623 306 0 0 0 chr1 4998560 4998594 -192196838 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 623 2061 102 42 54 chr1 4998594 4998647 -192196785 + ORR1A2 LTR MaLR 275 326 -1 9 623 1206 183 23 0 chr1 4999159 4999378 -192196054 + RMER15 LTR ERVL 31 254 -321 9 623 931 248 68 56 chr1 4999394 4999815 -192195617 + BGLII_B LTR ERVK 1 427 -265 9 623 509 191 0 0 chr1 4999916 5000000 -192195432 + RMER15 LTR ERVL 282 365 -210 9 623 1215 103 77 0 chr1 5000000 5000195 -192195237 + RMER15 LTR ERVL 366 575 0 1 623 396 0 0 0 chr1 5001597 5001641 -192193791 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 623 288 290 29 93 chr1 5001647 5001764 -192193668 + L1MEg LINE L1 1117 1226 -5016 3 623 180 0 0 0 chr1 5001764 5001784 -192193648 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 623 288 290 29 93 chr1 5001784 5001944 -192193488 + L1MEg LINE L1 1227 1376 -4866 3 623 257 250 17 0 chr1 5001971 5002031 -192193401 - ID_B1 SINE B4 -21 203 143 5 623 747 108 0 0 chr1 5002035 5002146 -192193286 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 6 623 26 0 0 0 chr1 5002183 5002209 -192193223 + AT_rich Low_complexity Low_complexity 1 26 0 7 623 344 269 164 9 chr1 5002244 5002360 -192193072 - ID_B1 SINE B4 -78 146 13 5 623 1629 229 11 34 chr1 5002360 5002739 -192192693 + ORR1D2 LTR MaLR 1 370 0 8 623 481 165 21 0 chr1 5002740 5002837 -192192595 + ORR1D2-int LTR MaLR 2 100 -1270 8 623 930 295 71 22 chr1 5002857 5003409 -192192023 + L1MEg LINE L1 5235 5818 -355 3 623 306 50 0 0 chr1 5003730 5003770 -192191662 + (CAGAG)n Simple_repeat Simple_repeat 1 40 0 9 623 21 0 0 0 chr1 5004124 5004145 -192191287 + AT_rich Low_complexity Low_complexity 1 21 0 1 623 319 335 76 29 chr1 5004147 5004319 -192191113 + MER20 DNA MER1_type 8 187 -32 1 623 232 296 0 0 chr1 5004437 5004491 -192190941 + PB1D7 SINE Alu 10 63 -57 1 623 396 0 0 0 chr1 5004928 5004972 -192190460 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 623 235 262 206 9 chr1 5006585 5006700 -192188732 + MIRc SINE MIR 30 164 -44 1 623 733 255 90 0 chr1 5006889 5007089 -192188343 - ID_B1 SINE B4 -6 218 1 1 623 403 222 15 100 chr1 5007200 5007330 -192188102 - RSINE1 SINE B4 -39 126 8 1 623 212 352 11 0 chr1 5007569 5007660 -192187772 - PB1D10 SINE Alu 0 117 26 1 623 452 285 8 15 chr1 5007755 5007887 -192187545 - B3 SINE B2 0 216 86 1 623 276 313 36 58 chr1 5011326 5011465 -192183967 + MER5A1 DNA MER1_type 16 151 -15 1 623 641 199 67 30 chr1 5012022 5012150 -192183282 + B1_Mur2 SINE Alu 2 135 -14 2 623 384 22 0 0 chr1 5012150 5012195 -192183237 + (CCA)n Simple_repeat Simple_repeat 3 47 0 2 623 317 264 133 81 chr1 5012253 5012463 -192182969 + ID_B1 SINE B4 3 223 -1 2 623 390 108 0 0 chr1 5012463 5012528 -192182904 + (GGA)n Simple_repeat Simple_repeat 1 65 0 2 623 423 0 0 0 chr1 5013502 5013549 -192181883 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 623 396 0 0 0 chr1 5014158 5014202 -192181230 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 623 232 288 15 0 chr1 5016055 5016121 -192179311 - tRNA-Ala-GCY_ tRNA tRNA -6 69 3 2 623 801 318 50 7 chr1 5016198 5016496 -192178936 + MLT1C LTR MaLR 18 328 -139 2 623 569 284 20 7 chr1 5016499 5016648 -192178784 + MLT2C2 LTR ERVL 221 371 -93 2 623 207 0 0 0 chr1 5016690 5016713 -192178719 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 623 1114 270 35 30 chr1 5016830 5017257 -192178175 + L1MB4 LINE L1 5754 6180 0 3 623 1050 156 35 52 chr1 5017670 5017900 -192177532 + ORR1C1 LTR MaLR 1 226 -152 3 623 4165 235 54 25 chr1 5017916 5019064 -192176368 + ORR1C1-int LTR MaLR 190 1370 0 3 623 2089 146 41 72 chr1 5019064 5019454 -192175978 + ORR1C1 LTR MaLR 1 378 0 3 623 624 62 0 0 chr1 5020644 5020725 -192174707 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 3 623 2877 174 34 4 chr1 5020774 5021310 -192174122 - L1_Mur3 LINE L1 -866 5014 4463 3 623 807 11 0 0 chr1 5021456 5021548 -192173884 + (CAAAC)n Simple_repeat Simple_repeat 4 95 0 3 623 286 273 0 13 chr1 5021720 5021798 -192173634 + MTD LTR MaLR 289 365 -54 3 623 235 263 29 78 chr1 5022316 5022419 -192173013 + L2c LINE L2 3051 3148 -239 3 623 867 259 29 57 chr1 5022704 5022950 -192172482 - B4A SINE B4 -37 255 17 3 623 459 0 0 0 chr1 5022950 5023001 -192172431 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 623 768 22 0 0 chr1 5023001 5023091 -192172341 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 623 344 211 14 0 chr1 5024143 5024214 -192171218 - ID4_ SINE ID -11 72 1 4 623 200 305 35 79 chr1 5024214 5024328 -192171104 - MIRc SINE MIR -46 222 114 4 623 41057 21 1 6 chr1 5024813 5031016 -192164416 - L1Md_T LINE L1 0 6582 416 4 623 10184 88 16 4 chr1 5031034 5032738 -192162694 - Lx3_Mus LINE L1 -8 7001 5269 4 623 210 37 0 0 chr1 5032738 5032765 -192162667 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 623 7598 77 18 4 chr1 5032765 5033165 -192162267 - Lx3_Mus LINE L1 -618 5268 4872 4 623 183 42 0 0 chr1 5034022 5034046 -192161386 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 623 409 271 0 0 chr1 5034048 5034144 -192161288 - B1_Mur2 SINE Alu -14 135 40 4 623 370 33 0 48 chr1 5034143 5034206 -192161226 + B1_Mur3 SINE Alu 90 149 0 4 623 444 91 0 0 chr1 5034209 5034275 -192161157 + (A)n Simple_repeat Simple_repeat 1 66 0 4 623 437 179 24 0 chr1 5034282 5034366 -192161066 - RLTR1B LTR ERV1 -84 428 343 4 623 1176 68 89 6 chr1 5034370 5034709 -192160723 - RLTR1B LTR ERV1 -102 410 1 5 623 15977 96 54 26 chr1 5034709 5036202 -192159230 - RLTR1B-int LTR ERV1 -700 3990 1141 5 623 604 0 26 0 chr1 5036202 5036278 -192159154 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 623 15977 55 49 12 chr1 5036278 5037376 -192158056 - RLTR1B-int LTR ERV1 -2159 1140 2 5 623 1059 108 18 0 chr1 5037376 5037543 -192157889 - RLTR1B LTR ERV1 0 512 343 5 623 410 54 0 0 chr1 5037547 5037603 -192157829 - RLTR1B LTR ERV1 -102 410 355 5 623 380 303 0 0 chr1 5037890 5037989 -192157443 + ID_B1 SINE B4 93 191 -33 5 623 20686 133 71 9 chr1 5038118 5039897 -192155535 + Lx LINE L1 569 2363 -3520 5 623 3826 9 121 0 chr1 5039897 5040337 -192155095 + MT2_Mm LTR ERVL 1 493 0 5 623 20686 161 127 15 chr1 5040337 5042129 -192153303 + Lx LINE L1 2364 4630 -1253 5 623 182 37 37 0 chr1 5042129 5042156 -192153276 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 623 20686 161 127 15 chr1 5042156 5042474 -192152958 + Lx LINE L1 4631 4926 -957 5 623 1145 81 0 0 chr1 5042474 5042622 -192152810 - B1_Mus1 SINE Alu 0 148 1 5 623 20686 150 54 15 chr1 5042622 5044355 -192151077 + Lx LINE L1 4927 6654 0 5 623 343 327 36 9 chr1 5044984 5045095 -192150337 + PB1D9 SINE Alu 2 115 -5 5 623 435 137 0 0 chr1 5045096 5045169 -192150263 + (GGA)n Simple_repeat Simple_repeat 2 74 0 5 623 677 206 12 12 chr1 5045260 5045427 -192150005 + B2_Mm2 SINE B2 10 176 -19 6 623 1044 243 34 8 chr1 5045473 5045738 -192149694 + RMER15 LTR ERVL 285 556 -19 6 623 535 294 98 15 chr1 5045806 5046010 -192149422 - B4A SINE B4 -1 291 71 6 623 327 275 190 0 chr1 5046431 5046573 -192148859 - L1MD2 LINE L1 -116 6243 6075 6 623 35056 79 11 10 chr1 5046668 5052866 -192142566 - L1Md_F2 LINE L1 0 6582 390 6 623 296 282 54 86 chr1 5052871 5053057 -192142375 - L1MD2 LINE L1 -362 5997 5818 6 623 533 248 253 11 chr1 5055226 5055491 -192139941 - L1MD2 LINE L1 -455 5787 5459 6 623 563 179 42 21 chr1 5055499 5055642 -192139790 - Lx9 LINE L1 -4 7640 7495 6 623 1412 192 134 12 chr1 5055642 5055984 -192139448 - ORR1C2 LTR MaLR 0 384 1 6 623 1580 227 41 0 chr1 5055984 5056328 -192139104 - Lx9 LINE L1 -157 7487 7130 6 623 253 320 17 150 chr1 5056384 5056557 -192138875 - MTEa LTR MaLR -67 312 163 6 623 631 105 26 0 chr1 5056578 5056692 -192138740 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 6 623 1984 149 53 22 chr1 5056705 5056739 -192138693 + ORR1B2 LTR MaLR 1 35 -332 6 623 4935 34 0 18 chr1 5056739 5057308 -192138124 + L1Md_F2 LINE L1 6024 6582 0 7 623 1984 149 53 22 chr1 5057308 5057629 -192137803 + ORR1B2 LTR MaLR 36 366 -1 6 623 216 280 21 0 chr1 5058198 5058291 -192137141 + (TA)n Simple_repeat Simple_repeat 1 95 0 7 623 27 73 0 0 chr1 5058478 5058533 -192136899 + AT_rich Low_complexity Low_complexity 1 55 0 7 623 541 236 59 27 chr1 5058538 5058725 -192136707 + MER2 DNA MER2_type 140 332 -13 7 623 366 348 0 0 chr1 5058865 5058957 -192136475 + PB1D10 SINE Alu 10 101 -16 7 623 294 309 0 0 chr1 5059757 5059825 -192135607 + ID4_ SINE ID 6 73 -10 7 623 248 167 24 0 chr1 5060820 5060862 -192134570 + MTE-int LTR MaLR 283 325 -1255 7 623 545 309 20 0 chr1 5060868 5061017 -192134415 - MTEa LTR MaLR -211 168 17 7 623 253 281 47 141 chr1 5061021 5061093 -192134339 - MTE-int LTR MaLR -1038 542 475 7 623 1431 74 17 0 chr1 5061093 5061269 -192134163 - B2_Mm1a SINE B2 -14 179 1 7 623 253 281 47 141 chr1 5061269 5061345 -192134087 - MTE-int LTR MaLR -1106 474 408 7 623 1502 241 90 43 chr1 5061643 5062089 -192133343 - RLTR28B LTR ERVL 0 481 15 8 623 454 155 21 0 chr1 5063381 5063478 -192131954 + CT-rich Low_complexity Low_complexity 3 101 0 8 623 440 321 27 0 chr1 5063484 5063596 -192131836 - ID_B1 SINE B4 -13 211 97 8 623 418 123 0 0 chr1 5063610 5063683 -192131749 - L1Md_F2 LINE L1 0 6582 6510 8 623 800 304 135 40 chr1 5063813 5064972 -192130460 + L1MEc LINE L1 35 1865 -4535 8 623 353 238 0 0 chr1 5065106 5065169 -192130263 + B4 SINE B4 230 292 0 8 623 279 54 0 0 chr1 5065198 5065235 -192130197 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 623 661 222 176 0 chr1 5065241 5065469 -192129963 + Lx8 LINE L1 6596 6863 -610 8 623 2113 201 83 56 chr1 5065498 5065541 -192129891 - RLTR20B3 LTR ERVK -46 531 485 8 623 387 0 0 0 chr1 5065541 5065584 -192129848 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 623 2113 201 83 56 chr1 5065584 5066057 -192129375 - RLTR20B3 LTR ERVK -93 484 2 8 623 1961 231 33 52 chr1 5066059 5066538 -192128894 + Lx8 LINE L1 6860 7329 -144 8 623 948 238 5 0 chr1 5066542 5066735 -192128697 + Lx9 LINE L1 6857 7050 -594 9 623 36991 44 3 3 chr1 5066879 5072240 -192123192 + L1Md_Gf LINE L1 245 5701 -185 9 623 2333 75 8 60 chr1 5072240 5072593 -192122839 + L1Md_F2 LINE L1 6244 6578 -4 9 623 1192 92 43 14 chr1 5072597 5072807 -192122625 + RMER17B LTR ERVK 264 479 -479 9 623 210 91 0 0 chr1 5073482 5073515 -192121917 + (CCGGG)n Simple_repeat Simple_repeat 3 35 0 9 623 641 200 20 7 chr1 5074848 5074994 -192120438 - B3 SINE B2 0 216 69 9 623 298 289 137 26 chr1 5074983 5075100 -192120332 - RSINE1 SINE B4 -12 153 24 9 623 1408 82 43 0 chr1 5076689 5076873 -192118559 + B2_Mm2 SINE B2 2 193 -2 9 623 662 188 164 0 chr1 5077741 5077869 -192117563 - B1_Mur2 SINE Alu 0 149 1 9 623 906 10 0 0 chr1 5077881 5077984 -192117448 + (TTTCC)n Simple_repeat Simple_repeat 4 106 0 9 623 360 0 0 0 chr1 5077985 5078025 -192117407 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1 623 1101 78 0 41 chr1 5078025 5078172 -192117260 - B1_Mus1 SINE Alu -7 141 1 1 623 182 310 0 17 chr1 5078340 5078399 -192117033 - MIRb SINE MIR 0 268 211 1 623 222 259 11 138 chr1 5079253 5079347 -192116085 + ID4_ SINE ID 2 83 0 1 623 284 234 24 61 chr1 5079418 5079500 -192115932 - ID4 SINE ID -2 81 3 1 623 955 213 59 5 chr1 5079727 5079930 -192115502 - B3 SINE B2 0 216 3 1 623 455 322 21 7 chr1 5079967 5080111 -192115321 - B1F SINE Alu -1 148 3 1 623 307 254 14 0 chr1 5080447 5080518 -192114914 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 1 623 498 252 108 0 chr1 5080829 5080940 -192114492 + B1_Mur2 SINE Alu 1 123 -26 1 623 3282 140 36 153 chr1 5081592 5082284 -192113148 - RMER19C LTR ERVK 0 611 1 1 623 250 270 13 13 chr1 5082341 5082416 -192113016 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 1 623 255 308 43 32 chr1 5082680 5082774 -192112658 - MamRep137 DNA TcMar? -348 96 2 1 623 603 226 16 0 chr1 5083283 5083407 -192112025 + B1_Mur2 SINE Alu 24 149 0 1 623 384 262 94 16 chr1 5083976 5084104 -192111328 - B3 SINE B2 0 216 79 1 623 373 246 164 16 chr1 5084260 5084388 -192111044 - B1F SINE Alu 0 149 3 1 623 443 319 0 0 chr1 5084413 5084529 -192110903 - PB1D10 SINE Alu 0 117 2 1 623 233 258 22 33 chr1 5084553 5084645 -192110787 + CT-rich Low_complexity Low_complexity 4 94 0 1 623 807 127 111 0 chr1 5084647 5084773 -192110659 - RLTR19 LTR ERVK -359 140 1 1 623 613 181 15 0 chr1 5084792 5084925 -192110507 + (TA)n Simple_repeat Simple_repeat 1 135 0 1 623 817 209 70 70 chr1 5084930 5085131 -192110301 - B3 SINE B2 -11 205 5 1 623 24 32 0 0 chr1 5085260 5085291 -192110141 + AT_rich Low_complexity Low_complexity 1 31 0 1 623 678 264 42 143 chr1 5085291 5085578 -192109854 + MTE2a LTR MaLR 7 264 -115 1 623 1074 264 152 0 chr1 5085852 5086155 -192109277 - ORR1E LTR MaLR -6 353 5 1 623 249 245 20 0 chr1 5087069 5087118 -192108314 - ID4_ SINE ID -29 54 5 1 623 662 259 96 20 chr1 5087130 5087327 -192108105 - ID_B1 SINE B4 -2 222 11 1 623 424 326 43 0 chr1 5087545 5087686 -192107746 - RSINE1 SINE B4 -15 150 4 1 623 347 312 0 68 chr1 5087743 5087860 -192107572 - PB1D10 SINE Alu 0 117 9 1 623 264 226 14 114 chr1 5087799 5087869 -192107563 - B4A SINE B4 -146 146 84 1 623 1233 96 50 11 chr1 5089379 5089558 -192105874 - B2_Mm1t SINE B2 -7 186 1 1 623 268 195 0 0 chr1 5092115 5092156 -192103276 - B1_Mur4 SINE Alu -106 44 4 1 623 207 0 0 0 chr1 5092218 5092241 -192103191 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1 623 574 286 91 11 chr1 5092241 5092428 -192103004 - B3 SINE B2 -14 202 1 1 623 330 26 0 0 chr1 5092839 5092878 -192102554 + (T)n Simple_repeat Simple_repeat 1 39 0 1 623 1288 41 0 0 chr1 5092878 5093024 -192102408 - B1_Mus2 SINE Alu 0 147 2 1 623 263 337 97 17 chr1 5093065 5093240 -192102192 - MIRb SINE MIR -7 261 73 1 623 619 311 78 42 chr1 5094099 5094434 -192100998 - L1MB7 LINE L1 -15 6169 5823 1 623 356 187 13 0 chr1 5094674 5094749 -192100683 + MER44D DNA MER2_type 43 118 -587 1 623 228 35 0 0 chr1 5095374 5095403 -192100029 + (T)n Simple_repeat Simple_repeat 1 29 0 1 623 278 224 92 18 chr1 5095403 5095499 -192099933 - B1_Mus2 SINE Alu 0 149 43 1 623 238 250 68 14 chr1 5095931 5096004 -192099428 - L1ME3 LINE L1 -166 5996 5920 1 623 259 241 105 18 chr1 5096093 5096207 -192099225 - L1ME3 LINE L1 -411 5762 5639 1 623 1540 58 16 0 chr1 5096235 5096423 -192099009 - B2_Mm2 SINE B2 -3 192 2 1 623 2481 229 120 73 chr1 5096424 5097267 -192098165 - RMER19B LTR ERVK -18 884 3 1 623 264 289 146 15 chr1 5097273 5097410 -192098022 - L1ME3 LINE L1 -527 5646 5492 1 623 313 329 13 30 chr1 5097426 5097538 -192097894 - PB1D10 SINE Alu -36 113 1 1 623 4358 158 128 18 chr1 5097544 5098568 -192096864 - RLTR22_Mur LTR ERVK -246 1602 506 1 623 1789 142 18 42 chr1 5098572 5098902 -192096530 - IAPLTR2b LTR ERVK -5 322 1 1 623 2590 157 44 16 chr1 5098903 5099400 -192096032 - RLTR22_Mur LTR ERVK -1337 511 1 1 623 508 179 84 0 chr1 5104643 5104738 -192090694 - RLTR23 LTR ERV1 -326 104 2 1 623 321 47 0 0 chr1 5104914 5104957 -192090475 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 623 780 88 0 0 chr1 5104957 5105070 -192090362 + (GA)n Simple_repeat Simple_repeat 1 114 0 1 623 183 80 0 0 chr1 5105075 5105100 -192090332 + (CAGAGA)n Simple_repeat Simple_repeat 4 28 0 1 623 837 187 72 0 chr1 5105275 5105414 -192090018 - B1_Mur4 SINE Alu 0 150 2 1 623 34 0 0 0 chr1 5105464 5105498 -192089934 + AT_rich Low_complexity Low_complexity 1 34 0 1 623 496 220 220 0 chr1 5105575 5105693 -192089739 + B1_Mur3 SINE Alu 1 144 -5 1 623 407 293 118 22 chr1 5106129 5106265 -192089167 - B1F SINE Alu 0 149 1 1 623 486 151 13 7 chr1 5106779 5106868 -192088564 - B1_Mus2 SINE Alu -1 146 34 1 623 283 258 169 0 chr1 5108461 5108550 -192086882 + PB1D9 SINE Alu 7 110 -10 1 623 25 31 0 0 chr1 5108550 5108582 -192086850 + AT_rich Low_complexity Low_complexity 1 32 0 1 623 558 304 28 19 chr1 5108697 5108914 -192086518 + Lx8 LINE L1 7117 7335 -361 1 623 261 259 14 197 chr1 5108780 5109059 -192086373 + RMER1C Other Other 1101 1328 -14 1 623 198 103 0 0 chr1 5109093 5109122 -192086310 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1 623 453 284 123 34 chr1 5109122 5109268 -192086164 - RSINE1 SINE B4 -6 159 1 1 623 292 253 36 0 chr1 5109269 5109352 -192086080 - Looper DNA PiggyBac -684 874 789 1 623 21 0 0 0 chr1 5109365 5109386 -192086046 + AT_rich Low_complexity Low_complexity 1 21 0 1 623 2008 297 62 6 chr1 5109418 5110068 -192085364 - Lx8 LINE L1 -530 6943 6258 1 623 261 0 0 0 chr1 5110188 5110217 -192085215 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 623 1031 46 0 0 chr1 5110217 5110347 -192085085 - B1_Mm SINE Alu -10 137 8 1 623 235 333 110 73 chr1 5110482 5110754 -192084678 - MER68 LTR ERVL -61 502 221 1 623 1111 230 115 13 chr1 5110755 5111059 -192084373 - ORR1D1 LTR MaLR -2 372 38 1 623 523 267 181 10 chr1 5111100 5111392 -192084040 - MLT1A0 LTR MaLR -21 344 3 1 77 452 271 163 50 chr1 5111490 5111871 -192083561 - Looper DNA PiggyBac -1065 493 70 1 624 25 0 0 0 chr1 5112318 5112343 -192083089 + AT_rich Low_complexity Low_complexity 1 25 0 1 624 1811 77 35 0 chr1 5112678 5112939 -192082493 - Lx3_Mus LINE L1 0 7009 6740 1 624 287 289 245 5 chr1 5112940 5113128 -192082304 - LTR50 LTR ERVL -248 547 241 1 624 354 256 245 5 chr1 5113510 5113710 -192081722 - L1MC2 LINE L1 -1 6343 6096 1 624 25 0 0 0 chr1 5113987 5114012 -192081420 + AT_rich Low_complexity Low_complexity 1 25 0 1 624 315 71 0 0 chr1 5115356 5115412 -192080020 + L1Md_F2 LINE L1 6524 6579 -3 1 624 489 158 0 70 chr1 5115558 5115687 -192079745 - L1Md_F3 LINE L1 0 6584 6465 1 624 658 288 20 46 chr1 5115697 5115899 -192079533 - B3A SINE B2 -3 192 1 1 624 3980 100 58 13 chr1 5115936 5116795 -192078637 - Lx LINE L1 0 6566 5628 1 624 2203 130 0 5 chr1 5116796 5117166 -192078266 + L1_Mur2 LINE L1 3733 4100 -1777 1 624 180 77 0 0 chr1 5117490 5117516 -192077916 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 624 191 250 33 16 chr1 5117597 5117658 -192077774 - MIRb SINE MIR 0 268 207 1 624 25 0 0 0 chr1 5117767 5117792 -192077640 + AT_rich Low_complexity Low_complexity 1 25 0 1 624 950 205 21 5 chr1 5118493 5118684 -192076748 - MTD LTR MaLR -3 416 223 1 624 537 216 20 0 chr1 5118708 5118810 -192076622 - PB1D9 SINE Alu -10 110 7 1 624 857 170 153 41 chr1 5118802 5118998 -192076434 - MTD LTR MaLR -201 218 1 1 624 286 125 261 0 chr1 5119931 5120019 -192075413 - L1_Rod LINE L1 -1175 4672 4562 1 624 195 69 0 0 chr1 5120019 5120048 -192075384 + (T)n Simple_repeat Simple_repeat 1 29 0 1 624 334 221 7 64 chr1 5120048 5120061 -192075371 - L1_Rod LINE L1 -1243 4634 4623 1 624 1209 41 0 20 chr1 5120061 5120211 -192075221 - B1_Mus2 SINE Alu 0 147 1 1 624 469 196 22 45 chr1 5120211 5120346 -192075086 - L1_Rod LINE L1 -1255 4622 4469 1 624 714 218 75 41 chr1 5120327 5120373 -192075059 - L1_Rod LINE L1 -2140 3707 3661 1 624 198 0 0 0 chr1 5120373 5120395 -192075037 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 624 714 218 75 41 chr1 5120395 5120640 -192074792 - L1_Rod LINE L1 -2187 3660 3406 1 624 2649 194 39 52 chr1 5120654 5121584 -192073848 - L1_Rod LINE L1 -4300 1547 634 1 624 406 282 50 19 chr1 5121654 5121813 -192073619 - L1_Rod LINE L1 -6932 676 513 1 624 252 339 63 63 chr1 5121824 5121950 -192073482 - ORR1E LTR MaLR -226 133 8 1 624 249 33 0 0 chr1 5122007 5122037 -192073395 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 624 7603 47 1 5 chr1 5122039 5123068 -192072364 - L1Md_F2 LINE L1 -24 6558 5534 1 624 342 180 243 0 chr1 5123378 5123489 -192071943 - B1_Mur2 SINE Alu -10 139 2 1 624 314 232 43 14 chr1 5123539 5123609 -192071823 - PB1 SINE Alu -40 87 16 1 624 352 274 151 101 chr1 5124085 5124284 -192071148 - RLTR24 LTR ERV1 0 529 321 1 624 846 257 63 32 chr1 5124524 5124745 -192070687 - MTE2b LTR MaLR -20 359 132 1 624 1200 272 37 40 chr1 5124781 5125133 -192070299 - ORR1E LTR MaLR -6 353 3 1 624 676 200 15 23 chr1 5125654 5125787 -192069645 - B1_Mur1 SINE Alu 0 149 18 1 624 488 296 0 52 chr1 5125656 5125809 -192069623 - ID_B1 SINE B4 0 224 80 1 624 401 254 76 5 chr1 5126225 5126435 -192068997 - L1M5 LINE L1 -877 5269 5045 1 624 463 215 0 21 chr1 5126603 5126698 -192068734 - B1F1 SINE Alu -57 91 4 1 624 21 0 0 0 chr1 5126770 5126791 -192068641 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 206 32 0 31 chr1 5126858 5126890 -192068542 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 624 1098 73 0 0 chr1 5126890 5127027 -192068405 - B1_Mm SINE Alu -9 138 2 2 624 327 311 50 36 chr1 5127028 5127168 -192068264 - L1M5 LINE L1 -1082 5064 4923 1 624 433 296 72 89 chr1 5127184 5127365 -192068067 + B4A SINE B4 3 176 -116 2 624 378 0 0 0 chr1 5127365 5127407 -192068025 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 624 433 296 72 89 chr1 5127407 5127518 -192067914 + B4A SINE B4 177 289 -3 2 624 278 330 57 32 chr1 5127607 5127854 -192067578 - L1MB8 LINE L1 -19 6165 5913 2 624 308 241 28 9 chr1 5128011 5128120 -192067312 - L1MB8 LINE L1 -278 5900 5790 2 624 295 180 0 20 chr1 5128217 5128268 -192067164 - MTEa LTR MaLR -129 250 201 2 624 662 190 218 28 chr1 5128271 5128450 -192066982 + B3 SINE B2 1 213 -3 2 624 398 244 122 0 chr1 5128528 5128643 -192066789 - L1MB8 LINE L1 -542 5642 5514 2 624 1058 106 12 24 chr1 5128643 5128808 -192066624 + B2_Mm2 SINE B2 2 164 -31 2 624 186 43 0 0 chr1 5128809 5128832 -192066600 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 624 275 257 18 0 chr1 5128854 5128920 -192066512 - ID4 SINE ID -70 82 16 2 624 334 268 107 107 chr1 5129016 5129175 -192066257 - L1MB8 LINE L1 -747 5427 5269 2 624 285 271 177 0 chr1 5129175 5129271 -192066161 - Tigger5 DNA MER2_type 0 2406 2294 2 624 355 343 84 0 chr1 5129269 5129412 -192066020 - Tigger5 DNA MER2_type -2163 243 90 2 624 255 31 0 0 chr1 5129433 5129465 -192065967 + (T)n Simple_repeat Simple_repeat 1 32 0 2 624 333 100 0 0 chr1 5129722 5129772 -192065660 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 624 325 282 66 44 chr1 5129813 5129902 -192065530 - L1MC2 LINE L1 -27 6317 6222 2 624 457 287 17 0 chr1 5129902 5130017 -192065415 - PB1D10 SINE Alu 0 117 1 2 624 325 282 66 44 chr1 5130017 5130064 -192065368 - L1MC2 LINE L1 -123 6221 6178 2 624 2198 312 63 35 chr1 5130064 5131083 -192064349 - RMER15-int LTR ERVL -3946 1053 7 2 624 458 252 24 31 chr1 5131094 5131221 -192064211 - RMER15 LTR ERVL -13 562 437 2 624 628 267 15 0 chr1 5131348 5131483 -192063949 + B3 SINE B2 80 216 0 2 624 231 197 49 0 chr1 5131731 5131792 -192063640 - Lx9 LINE L1 -70 7574 7511 2 624 733 261 55 11 chr1 5132258 5132440 -192062992 - B3A SINE B2 0 198 9 2 624 360 236 110 7 chr1 5132548 5132693 -192062739 - Lx9 LINE L1 -139 7505 7346 2 624 1122 93 0 0 chr1 5132784 5133043 -192062389 + (TG)n Simple_repeat Simple_repeat 1 259 0 2 624 2249 244 10 6 chr1 5133104 5133619 -192061813 - Lx7 LINE L1 -483 7213 6697 2 624 1664 232 66 9 chr1 5134924 5135351 -192060081 - Lx6 LINE L1 -4 7456 7006 2 624 205 202 104 96 chr1 5136587 5136702 -192058730 + L3 LINE CR1 2462 2577 -1912 2 624 6838 88 26 16 chr1 5136707 5138025 -192057407 - L1_Mus4 LINE L1 -10 6626 5301 2 624 730 300 40 44 chr1 5138710 5138985 -192056447 - MER82 DNA MER2_type -2 651 378 2 624 1030 92 0 0 chr1 5138988 5139129 -192056303 - B1_Mus2 SINE Alu 0 147 7 2 624 602 241 43 31 chr1 5139134 5139297 -192056135 - MER82 DNA MER2_type -268 385 221 2 624 476 277 222 6 chr1 5139701 5139868 -192055564 - ORR1D1 LTR MaLR -171 203 1 2 624 565 214 177 12 chr1 5141528 5141692 -192053740 - B3 SINE B2 0 216 45 2 624 347 182 76 0 chr1 5141693 5141759 -192053673 - MTD-int LTR MaLR -1186 72 2 2 624 1655 205 88 16 chr1 5141760 5142147 -192053285 - MTD LTR MaLR 0 419 5 2 624 2080 146 3 0 chr1 5142396 5142711 -192052721 + ORR1A3 LTR MaLR 3 318 -8 2 624 7602 172 36 71 chr1 5142711 5144416 -192051016 + ORR1A3-int LTR MaLR 2 1646 -146 2 624 1161 128 11 43 chr1 5144421 5144608 -192050824 + ORR1A3 LTR MaLR 139 319 -8 2 624 265 286 29 0 chr1 5145044 5145114 -192050318 - MLT1J LTR MaLR -54 458 387 2 624 180 77 0 0 chr1 5145165 5145191 -192050241 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 624 546 295 92 11 chr1 5145312 5145811 -192049621 - Lx8 LINE L1 -1567 5906 5346 2 624 773 250 41 15 chr1 5145802 5146070 -192049362 - L1_Mur3 LINE L1 -1596 4284 4010 2 624 390 147 0 0 chr1 5146071 5146139 -192049293 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 2 624 598 252 26 45 chr1 5146218 5146372 -192049060 - B3A SINE B2 -46 152 2 2 624 1230 114 0 6 chr1 5146469 5146646 -192048786 - ORR1B1 LTR MaLR 0 394 219 2 624 2236 197 83 68 chr1 5146647 5146687 -192048745 - RMER19B LTR ERVK 0 902 880 2 624 986 38 122 0 chr1 5146687 5146818 -192048614 - B1_Mm SINE Alu 0 147 1 2 624 2236 197 83 68 chr1 5146818 5147333 -192048099 - RMER19B LTR ERVK -23 879 339 2 624 668 235 29 0 chr1 5147327 5147463 -192047969 + B3 SINE B2 74 213 -3 2 624 400 245 133 0 chr1 5147510 5147608 -192047824 + B1_Mm SINE Alu 39 149 0 2 624 279 305 12 12 chr1 5147983 5148066 -192047366 + B3A SINE B2 2 84 -114 2 624 38 0 0 0 chr1 5148078 5148116 -192047316 + AT_rich Low_complexity Low_complexity 1 38 0 2 624 250 155 51 101 chr1 5148116 5148195 -192047237 - Lx8 LINE L1 -359 7114 7040 2 624 719 245 115 20 chr1 5148230 5148526 -192046906 + Lx8 LINE L1 7149 7472 -1 2 624 237 330 11 0 chr1 5148798 5148892 -192046540 + Lx8 LINE L1 7049 7143 -330 2 624 3695 140 61 25 chr1 5148894 5149562 -192045870 + RLTR17 LTR ERVK 1 692 0 2 624 655 234 58 0 chr1 5149728 5149865 -192045567 - B1_Mur1 SINE Alu -2 147 3 2 624 416 262 6 14 chr1 5151558 5151661 -192043771 - PB1D10 SINE Alu -41 108 10 2 624 183 80 0 0 chr1 5152655 5152680 -192042752 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 2 624 255 61 0 0 chr1 5153033 5153066 -192042366 + (T)n Simple_repeat Simple_repeat 1 33 0 2 624 5730 195 84 45 chr1 5153336 5155377 -192040055 - Lx6 LINE L1 -154 7542 5150 2 624 1937 156 9 53 chr1 5155377 5155716 -192039716 - ORR1A3 LTR MaLR 0 326 3 2 624 2992 171 61 20 chr1 5155716 5155763 -192039669 - Lx6 LINE L1 -731 5149 5103 2 624 9027 122 17 6 chr1 5155786 5157714 -192037718 - Lx2A LINE L1 -7 7001 5051 2 624 4097 149 98 18 chr1 5157713 5158562 -192036870 - Lx2A LINE L1 -1481 4399 3483 2 624 283 192 13 27 chr1 5158562 5158637 -192036795 - RMER4B LTR ERVK 0 585 512 2 624 1094 280 37 50 chr1 5158682 5159005 -192036427 - RMER2 LTR ERV1 0 567 249 2 624 410 297 131 41 chr1 5159051 5159272 -192036160 + RMER2 LTR ERV1 323 563 -4 2 624 294 188 0 0 chr1 5159273 5159321 -192036111 - MurERV4-int LTR ERVK -4652 608 561 2 624 1531 189 101 7 chr1 5159410 5159795 -192035637 + RLTR1B LTR ERV1 77 512 0 2 624 1135 188 158 108 chr1 5159795 5160388 -192035044 + MuRRS4-int LTR ERV1 1 623 -6933 2 624 272 188 0 72 chr1 5160914 5160983 -192034449 + MuRRS4-int LTR ERV1 1074 1137 -2561 2 624 1634 135 53 11 chr1 5161054 5161338 -192034094 + MuRRS4-int LTR ERV1 1158 1453 -2245 2 624 7010 91 18 23 chr1 5161337 5162743 -192032689 + MuRRS4-int LTR ERV1 2006 3550 -1513 2 624 717 98 0 0 chr1 5162744 5162846 -192032586 + RLTR1 LTR ERV1 523 624 0 2 624 1864 237 40 11 chr1 5162870 5163130 -192032302 - MurERV4-int LTR ERVK -4751 509 220 2 624 180 0 0 0 chr1 5163130 5163150 -192032282 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 624 1864 227 41 13 chr1 5163150 5163210 -192032222 - MurERV4-int LTR ERVK -4973 287 229 2 624 333 0 0 0 chr1 5163210 5163247 -192032185 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 624 1864 227 41 13 chr1 5163247 5163434 -192031998 - MurERV4-int LTR ERVK -5032 228 40 2 624 257 220 0 0 chr1 5163437 5163487 -192031945 - RMER17C LTR ERVK -332 78 29 2 624 4311 94 36 22 chr1 5163487 5164331 -192031101 + L1_Mus3 LINE L1 5717 6638 0 2 624 911 120 1 12 chr1 5164313 5164470 -192030962 + L1_Mm LINE L1 4438 4578 -1305 2 624 1327 161 89 8 chr1 5164518 5164775 -192030657 - RLTR40 LTR ERVK -539 278 1 2 624 279 270 21 53 chr1 5164910 5165004 -192030428 + B3 SINE B2 7 97 -119 2 624 24 32 0 0 chr1 5165445 5165476 -192029956 + AT_rich Low_complexity Low_complexity 1 31 0 2 624 716 165 0 32 chr1 5165524 5165649 -192029783 + RMER10A LTR ERVL 5 125 -317 2 624 2530 80 30 108 chr1 5165651 5165844 -192029588 + MTB LTR MaLR 1 151 -249 2 624 1903 141 199 29 chr1 5165844 5166225 -192029207 - RLTR41 LTR ERV1 0 446 1 2 624 2530 80 30 108 chr1 5166225 5166465 -192028967 + MTB LTR MaLR 152 400 0 2 624 1403 176 79 35 chr1 5166465 5166771 -192028661 + RMER10A LTR ERVL 123 442 0 2 624 256 267 0 0 chr1 5166844 5166904 -192028528 + RLTR42-int LTR ERVK 1689 1748 -3774 2 624 1131 234 105 14 chr1 5166916 5167202 -192028230 - Lx8 LINE L1 -153 7320 7009 2 624 391 320 76 115 chr1 5167458 5167762 -192027670 + B4A SINE B4 1 292 0 2 624 7995 138 131 14 chr1 5169206 5171107 -192024325 + Lx4B LINE L1 4209 6350 -708 2 624 3858 152 71 26 chr1 5171109 5171961 -192023471 + Lx2 LINE L1 5997 7006 -2 2 624 443 195 13 13 chr1 5172200 5172278 -192023154 + ID4 SINE ID 4 81 -2 2 624 413 321 30 7 chr1 5173768 5173903 -192021529 + MTEa LTR MaLR 127 264 -115 2 624 212 167 0 0 chr1 5174245 5174287 -192021145 + T-rich Low_complexity Low_complexity 1 42 0 2 624 211 328 29 29 chr1 5174336 5174405 -192021027 + MIRc SINE MIR 99 167 -101 2 624 209 98 73 0 chr1 5174443 5174484 -192020948 + T-rich Low_complexity Low_complexity 2 45 0 2 624 912 109 65 0 chr1 5174486 5174624 -192020808 - B1_Mus1 SINE Alu 0 148 2 2 624 935 223 18 39 chr1 5176473 5176702 -192018730 - MTEa LTR MaLR -155 224 1 2 624 1076 191 130 5 chr1 5176827 5177027 -192018405 - URR1B DNA MER1_type 0 225 1 2 624 3109 193 35 31 chr1 5177735 5178354 -192017078 + RMER20B LTR ERVK 6 627 0 2 624 1928 153 19 9 chr1 5178765 5179082 -192016350 - ORR1A4 LTR MaLR -9 320 1 2 624 36170 49 0 5 chr1 5179224 5184805 -192010627 + L1Md_T LINE L1 1 5589 -297 2 624 8912 34 1 1 chr1 5184805 5185801 -192009631 + L1Md_T LINE L1 5590 6585 0 2 624 33 0 0 0 chr1 5186173 5186206 -192009226 + AT_rich Low_complexity Low_complexity 1 33 0 2 624 30712 136 34 7 chr1 5186216 5187379 -192008053 + L1_Mus2 LINE L1 599 1827 -4056 2 624 2449 72 3 48 chr1 5187379 5187716 -192007716 + RLTRETN_Mm LTR ERVK 1 322 0 2 624 30712 109 20 9 chr1 5187716 5189361 -192006071 + L1_Mus2 LINE L1 1828 3478 -2405 2 624 207 0 0 0 chr1 5189361 5189384 -192006048 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 624 30712 99 18 8 chr1 5189384 5192458 -192002974 + L1_Mus2 LINE L1 3479 6566 0 2 624 3029 313 82 14 chr1 5192463 5193534 -192001898 - Lx8 LINE L1 -144 7329 6178 2 624 423 0 0 0 chr1 5193534 5193581 -192001851 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 624 3029 313 82 14 chr1 5193581 5193663 -192001769 - Lx8 LINE L1 -1296 6177 6098 2 624 21 0 0 0 chr1 5193944 5193965 -192001467 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 288 0 0 0 chr1 5194002 5194034 -192001398 + (T)n Simple_repeat Simple_repeat 1 32 0 2 624 209 146 0 68 chr1 5194495 5194554 -192000878 + A-rich Low_complexity Low_complexity 2 56 0 2 624 557 123 12 0 chr1 5194567 5194648 -192000784 + Lx9 LINE L1 6870 6951 -693 2 624 3871 141 14 19 chr1 5194651 5195271 -192000161 - RMER19A LTR ERVK -120 617 1 2 624 1883 205 58 7 chr1 5195274 5195686 -191999746 + Lx9 LINE L1 7032 7464 -180 2 624 2024 151 83 17 chr1 5195717 5196068 -191999364 - ORR1D1 LTR MaLR 0 374 1 2 624 443 189 31 39 chr1 5196068 5196187 -191999245 + Lx9 LINE L1 7526 7644 0 2 624 741 257 20 0 chr1 5196243 5196395 -191999037 - RSINE1 SINE B4 -6 159 5 3 624 2033 133 45 15 chr1 5196642 5196978 -191998454 - ORR1B1 LTR MaLR -8 386 41 3 624 1850 276 63 135 chr1 5197026 5197913 -191997519 - RMER13A LTR ERVK -37 823 1 3 624 215 148 0 36 chr1 5199519 5199575 -191995857 + T-rich Low_complexity Low_complexity 3 56 0 3 624 372 282 81 0 chr1 5200494 5200618 -191994814 - L1MA7 LINE L1 -135 6156 6023 3 624 291 225 16 90 chr1 5201198 5201320 -191994112 + L1_Mur3 LINE L1 888 1000 -6712 3 624 1303 224 35 11 chr1 5201742 5202284 -191993148 + Lx6 LINE L1 890 1504 -4373 3 624 8144 182 29 50 chr1 5202262 5202464 -191992968 + Lx6 LINE L1 4110 4336 -1544 3 624 1486 81 5 0 chr1 5202464 5202650 -191992782 + B2_Mm1t SINE B2 2 188 -5 3 624 8144 182 29 50 chr1 5202650 5203037 -191992395 + Lx6 LINE L1 4337 4673 -1207 3 624 800 85 246 0 chr1 5203037 5203155 -191992277 + B1_Mus1 SINE Alu 2 148 0 3 624 8144 186 27 48 chr1 5203155 5204501 -191990931 + Lx6 LINE L1 4674 6008 -1452 3 624 468 0 0 0 chr1 5204543 5204595 -191990837 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 624 683 127 0 53 chr1 5204606 5204739 -191990693 + L1_Mur3 LINE L1 2065 2190 -3690 3 624 3351 156 129 12 chr1 5204736 5204938 -191990494 + L1_Mur3 LINE L1 2765 2993 -2887 3 624 225 0 0 0 chr1 5204938 5204963 -191990469 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 624 3351 156 129 12 chr1 5204963 5205442 -191989990 + L1_Mur3 LINE L1 2994 3526 -2354 3 624 758 232 67 88 chr1 5205428 5205494 -191989938 - L1_Mur3 LINE L1 -5781 1289 1228 3 624 279 0 0 0 chr1 5205494 5205525 -191989907 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 624 1266 56 0 0 chr1 5205525 5205669 -191989763 - B1_Mm SINE Alu -2 145 2 3 624 778 242 62 76 chr1 5205669 5206075 -191989357 - L1_Mur3 LINE L1 -6448 1264 882 3 624 303 301 147 12 chr1 5206852 5207111 -191988321 + L1MC LINE L1 4405 4698 -1448 3 624 494 43 0 14 chr1 5207403 5207473 -191987959 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 3 624 331 311 37 9 chr1 5208317 5208424 -191987008 + MER65D LTR ERV1 16 125 -348 3 624 374 311 73 7 chr1 5208519 5208655 -191986777 + MER65D LTR ERV1 157 301 -172 3 624 339 85 0 0 chr1 5209062 5209109 -191986323 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 624 21 0 0 0 chr1 5209591 5209612 -191985820 + AT_rich Low_complexity Low_complexity 1 21 0 3 624 453 291 20 47 chr1 5209789 5209937 -191985495 - B1F SINE Alu -5 144 1 3 624 2709 214 101 3 chr1 5210003 5210625 -191984807 - Lx9 LINE L1 -2 7642 6960 3 624 2217 211 23 27 chr1 5210616 5211154 -191984278 - Lx9 LINE L1 -1714 5930 5362 3 624 480 288 182 48 chr1 5211194 5211446 -191983986 - MTE2b LTR MaLR -56 323 38 3 624 251 281 115 56 chr1 5212417 5212703 -191982729 - L1M4c LINE L1 -2922 3460 3158 3 624 333 0 0 0 chr1 5212730 5212767 -191982665 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 624 306 0 0 0 chr1 5212767 5212800 -191982632 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 624 518 312 28 0 chr1 5212800 5212944 -191982488 - RSINE1 SINE B4 -8 157 10 3 624 1025 271 87 46 chr1 5212957 5213374 -191982058 - L1M4c LINE L1 -3212 3170 2750 3 624 1739 177 138 9 chr1 5213374 5213699 -191981733 + ORR1B2 LTR MaLR 1 367 0 3 624 1025 271 87 46 chr1 5213699 5213892 -191981540 - L1M4c LINE L1 -3633 2749 2535 3 624 525 265 78 32 chr1 5213988 5214296 -191981136 - L1M4c LINE L1 -4010 2374 2053 3 624 218 263 18 0 chr1 5214350 5214407 -191981025 - ID4_ SINE ID -4 79 22 3 624 385 184 0 30 chr1 5214507 5214641 -191980791 + CT-rich Low_complexity Low_complexity 1 129 0 3 624 728 239 0 0 chr1 5214644 5214778 -191980654 - B1_Mur1 SINE Alu -14 135 2 3 624 930 226 220 38 chr1 5214893 5215206 -191980226 - ORR1D2 LTR MaLR 0 370 1 3 624 411 286 10 0 chr1 5215324 5215422 -191980010 - PB1D10 SINE Alu -18 99 1 3 624 209 30 0 57 chr1 5215583 5215618 -191979814 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 624 642 276 58 17 chr1 5215620 5215793 -191979639 - B3A SINE B2 -15 183 4 3 624 658 242 93 6 chr1 5215794 5215945 -191979487 + RMER15 LTR ERVL 377 540 -35 3 624 288 0 0 0 chr1 5215945 5215977 -191979455 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 624 658 242 93 6 chr1 5215977 5216008 -191979424 + RMER15 LTR ERVL 541 574 -1 3 624 180 97 0 0 chr1 5216539 5216570 -191978862 + (C)n Simple_repeat Simple_repeat 1 31 0 3 624 1001 82 97 0 chr1 5216587 5216721 -191978711 - B1_Mus2 SINE Alu 0 147 1 3 624 279 305 82 33 chr1 5217183 5217366 -191978066 + Charlie2b DNA MER1_type 1216 1407 -1375 3 624 598 216 0 10 chr1 5217722 5217825 -191977607 + RSINE1 SINE B4 2 103 -62 3 624 1901 174 61 31 chr1 5218038 5218430 -191977002 + RLTR9E LTR ERVK 6 409 0 3 624 232 241 134 59 chr1 5218596 5218715 -191976717 - MamGypLTR2c LTR Gypsy -24 1044 917 3 624 216 0 0 0 chr1 5220443 5220467 -191974965 + (A)n Simple_repeat Simple_repeat 1 24 0 3 624 239 313 153 20 chr1 5222523 5222673 -191972759 + MIR SINE MIR 32 201 -61 3 624 231 152 0 0 chr1 5222829 5222875 -191972557 + T-rich Low_complexity Low_complexity 1 46 0 3 624 1129 283 23 0 chr1 5223710 5223968 -191971464 - Lx8 LINE L1 -398 7075 6812 3 624 1005 281 20 4 chr1 5224601 5224848 -191970584 - Lx8 LINE L1 -745 6728 6478 3 624 376 320 152 26 chr1 5225356 5225587 -191969845 - MER2 DNA MER2_type 0 345 86 3 624 381 291 177 18 chr1 5225815 5226148 -191969284 - L1ME3B LINE L1 -140 6100 5715 3 624 4253 179 36 9 chr1 5226381 5227131 -191968301 + RLTR25B LTR ERVK 1 770 -258 3 624 293 219 13 27 chr1 5227134 5227209 -191968223 + RLTR25B LTR ERVK 892 965 -63 3 624 351 0 0 0 chr1 5227209 5227248 -191968184 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 624 242 265 123 38 chr1 5227671 5227777 -191967655 + PB1D10 SINE Alu 3 117 0 3 624 636 50 0 0 chr1 5227909 5227989 -191967443 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 3 624 2848 308 74 30 chr1 5228035 5229231 -191966201 + ETnERV2-int LTR ERVK 328 1576 -1738 3 624 3005 279 73 30 chr1 5229273 5230829 -191964603 + ETnERV2-int LTR ERVK 2310 4693 -2713 3 624 2594 216 12 16 chr1 5230841 5231406 -191964026 + ETnERV2-int LTR ERVK 5642 6204 -1202 3 624 281 218 107 114 chr1 5231685 5231825 -191963607 + RMER16-int LTR ERVK 5241 5379 -27 3 624 632 264 133 72 chr1 5231916 5232263 -191963169 + RLTR9A LTR ERVK 1 368 0 3 624 3620 168 50 34 chr1 5232318 5233040 -191962392 - RMER13B LTR ERVK 0 860 1 3 624 934 279 136 6 chr1 5233040 5233422 -191962010 + Lx5 LINE L1 5916 6374 -676 3 624 1359 306 82 44 chr1 5233413 5233964 -191961468 + Lx5 LINE L1 6479 7050 0 3 624 2484 144 38 0 chr1 5234270 5234638 -191960794 - RLTR14 LTR ERV1 0 382 1 3 624 1150 292 19 42 chr1 5234810 5235189 -191960243 - ORR1D2 LTR MaLR 0 370 1 3 624 6396 99 13 0 chr1 5235938 5236773 -191958659 - L1_Mus3 LINE L1 0 6638 5793 3 624 442 252 28 68 chr1 5236798 5236979 -191958453 + L1VL1 LINE L1 61 403 -6019 3 624 6925 93 4 0 chr1 5237081 5238536 -191956896 - L1VL1 LINE L1 -2046 1652 193 3 624 2297 209 36 114 chr1 5238566 5239199 -191956233 - Lx5 LINE L1 0 7050 6467 3 624 1482 67 22 0 chr1 5239256 5239436 -191955996 - B2_Mm2 SINE B2 -10 185 2 3 624 4748 12 0 0 chr1 5240082 5240575 -191954857 - MT2_Mm LTR ERVL 0 493 1 3 624 322 0 0 0 chr1 5240575 5240613 -191954819 - MERVL-int LTR ERVL 0 5485 5448 3 624 369 137 13 40 chr1 5240613 5240689 -191954743 - ORR1D2-int LTR MaLR -1323 640 567 3 9 48759 17 1 0 chr1 5240689 5246057 -191949375 - MERVL-int LTR ERVL -114 5371 1 3 625 4704 10 0 12 chr1 5246057 5246556 -191948876 - MT2_Mm LTR ERVL 0 493 1 3 625 26 74 0 0 chr1 5247041 5247095 -191948337 + AT_rich Low_complexity Low_complexity 1 54 0 3 625 2756 163 69 182 chr1 5247163 5248046 -191947386 - RLTR40 LTR ERVK -34 783 1 3 625 688 172 35 0 chr1 5248370 5248486 -191946946 - RMER12B LTR ERVK -4 1400 1281 3 625 372 22 0 0 chr1 5248498 5248543 -191946889 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 625 189 0 0 0 chr1 5248792 5248813 -191946619 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 3 625 1813 160 56 31 chr1 5249247 5249602 -191945830 - RMER4A LTR ERVK -102 364 1 3 625 559 343 92 25 chr1 5250364 5250811 -191944621 - MLT1F2 LTR MaLR -38 522 1 3 625 1041 183 48 89 chr1 5250905 5251268 -191944164 - RLTRETN_Mm LTR ERVK 0 409 6 3 625 496 79 24 73 chr1 5251285 5251367 -191944065 - ETnERV2-int LTR ERVK 0 7406 7329 3 625 448 190 297 19 chr1 5251367 5251576 -191943856 - RLTR13D6 LTR ERVK -365 537 271 3 625 329 256 11 11 chr1 5252272 5252359 -191943073 + L1MDa LINE L1 1286 1372 -5261 3 625 26 74 0 0 chr1 5253069 5253123 -191942309 + AT_rich Low_complexity Low_complexity 1 54 0 3 625 663 262 84 11 chr1 5253440 5253700 -191941732 + L1MDa LINE L1 5852 6131 -502 3 625 732 154 8 8 chr1 5253708 5253832 -191941600 - MTC LTR MaLR -13 408 285 3 625 621 186 46 73 chr1 5254437 5254588 -191940844 - B1_Mur3 SINE Alu 0 149 3 3 625 4414 98 27 3 chr1 5255459 5256050 -191939382 + L1_Mus4 LINE L1 6032 6636 0 3 625 504 322 32 32 chr1 5256132 5256321 -191939111 - MER74B LTR ERVL -351 271 83 3 625 244 306 141 0 chr1 5256350 5256520 -191938912 + MER68 LTR ERVL 17 210 -353 3 625 543 307 104 0 chr1 5256545 5256747 -191938685 + MER68 LTR ERVL 266 488 -75 3 625 39624 43 8 0 chr1 5256819 5263140 -191932292 - L1Md_T LINE L1 0 6582 281 3 625 595 302 143 15 chr1 5263475 5263747 -191931685 - MLT2D LTR ERVL -3 411 105 3 625 501 246 74 46 chr1 5264388 5264574 -191930858 - RLTR21 LTR ERVK -117 1455 1267 3 625 297 75 0 0 chr1 5264574 5264614 -191930818 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 625 3183 140 81 64 chr1 5264614 5265310 -191930122 - RLTR21 LTR ERVK -138 1266 460 3 625 1062 73 65 7 chr1 5265310 5265448 -191929984 + B1_Mus2 SINE Alu 1 146 -1 3 625 333 176 0 42 chr1 5265470 5265541 -191929891 - RLTR21 LTR ERVK -1074 498 431 3 625 423 0 0 0 chr1 5267463 5267510 -191927922 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 625 4268 115 7 3 chr1 5267615 5268183 -191927249 - Lx LINE L1 -4 6650 6081 3 625 2162 176 98 2 chr1 5268183 5268581 -191926851 - RLTR21 LTR ERVK -1136 436 1 3 625 431 317 10 0 chr1 5268871 5268975 -191926457 - RSINE1 SINE B4 -17 148 44 3 625 23 33 0 0 chr1 5269000 5269030 -191926402 + AT_rich Low_complexity Low_complexity 1 30 0 3 625 407 287 114 26 chr1 5270100 5270294 -191925138 + MLT2C2 LTR ERVL 121 338 -126 3 625 589 321 25 18 chr1 5271640 5271919 -191923513 - RLTR6-int LTR ERV1 -51 7727 7447 3 625 360 367 0 20 chr1 5272356 5272506 -191922926 - MMERGLN-int LTR ERV1 -1996 5560 5414 3 625 1965 230 19 14 chr1 5272679 5273107 -191922325 - MuRRS4-int LTR ERV1 -1101 3962 3533 3 625 636 192 102 51 chr1 5273494 5273691 -191921741 - RLTR47_MM LTR ERV1 0 532 326 3 625 265 204 49 7 chr1 5274681 5274824 -191920608 + (TA)n Simple_repeat Simple_repeat 1 149 0 3 625 271 300 12 12 chr1 5274896 5274977 -191920455 - ID4_ SINE ID -2 81 1 3 625 323 281 41 10 chr1 5275031 5275128 -191920304 + B1_Mur2 SINE Alu 40 139 -10 3 625 6866 113 54 3 chr1 5277139 5278342 -191917090 - Lx LINE L1 -17 6637 5378 4 625 2130 229 140 61 chr1 5278342 5279230 -191916202 - RMER17B LTR ERVK 0 958 1 4 625 6827 177 2 11 chr1 5279230 5280050 -191915382 - Lx LINE L1 -506 5377 4564 4 625 8591 117 68 13 chr1 5280040 5282067 -191913365 - L1VL2 LINE L1 -1188 2427 268 4 625 601 282 7 0 chr1 5282102 5282244 -191913188 - B1_Mur1 SINE Alu -5 144 2 4 625 1888 162 58 42 chr1 5282375 5282755 -191912677 - RMER6C LTR ERVK -304 386 1 4 625 229 331 57 88 chr1 5282912 5283071 -191912361 + MamGypLTR1c LTR Gypsy 175 328 -475 4 625 4611 38 0 12 chr1 5283626 5284188 -191911244 - L1Md_T LINE L1 0 6582 6028 4 625 471 195 25 42 chr1 5284188 5284306 -191911126 + RLTR42-int LTR ERVK 4261 4376 -1146 4 625 248 219 167 30 chr1 5284334 5284400 -191911032 + MTE2b LTR MaLR 305 379 0 4 625 292 346 143 25 chr1 5284400 5284631 -191910801 - RMER15 LTR ERVL -41 534 276 4 625 25 0 0 0 chr1 5284641 5284666 -191910766 + AT_rich Low_complexity Low_complexity 1 25 0 4 625 530 227 27 120 chr1 5284674 5284824 -191910608 - ID_B1 SINE B4 -8 216 81 4 625 501 239 103 0 chr1 5285044 5285161 -191910271 - B1F SINE Alu -20 129 1 4 625 1101 271 98 30 chr1 5285365 5285802 -191909630 + Lx8 LINE L1 6758 7224 -249 4 625 6973 37 28 1 chr1 5286271 5287104 -191908328 + RLTR13A LTR ERVK 1 855 0 4 625 361 360 45 26 chr1 5287152 5287306 -191908126 - L1MDa LINE L1 -5680 953 797 4 625 559 345 71 94 chr1 5287476 5287882 -191907550 - L1MDa LINE L1 -6099 534 138 4 625 27 0 0 0 chr1 5288215 5288242 -191907190 + AT_rich Low_complexity Low_complexity 1 27 0 4 625 593 65 37 0 chr1 5288779 5288887 -191906545 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 4 625 3553 38 28 0 chr1 5289120 5289544 -191905888 + RLTR10C LTR ERVK 1 436 0 4 625 353 191 19 50 chr1 5290438 5290598 -191904834 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 4 625 204 179 54 0 chr1 5290646 5290758 -191904674 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 625 199 306 87 58 chr1 5291171 5291275 -191904157 - MIRm SINE MIR -4 272 166 4 625 40 59 0 0 chr1 5291421 5291489 -191903943 + AT_rich Low_complexity Low_complexity 1 68 0 4 625 2292 184 6 17 chr1 5292374 5292843 -191902589 - L1_Mur3 LINE L1 -762 5118 4655 4 625 2860 239 42 23 chr1 5292830 5293418 -191902014 - L1_Mur3 LINE L1 -1795 4085 3482 4 625 189 74 0 0 chr1 5293418 5293445 -191901987 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 625 2860 239 42 23 chr1 5293445 5293853 -191901579 - L1_Mur3 LINE L1 -2399 3481 3070 4 625 561 68 0 0 chr1 5294174 5294248 -191901184 + (CAAAG)n Simple_repeat Simple_repeat 1 74 0 4 625 375 41 0 0 chr1 5295966 5296015 -191899417 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 625 2010 214 16 221 chr1 5296801 5297263 -191898169 - RMER19C LTR ERVK 0 611 241 4 625 715 193 0 13 chr1 5297263 5297415 -191898017 + Lx4A LINE L1 6909 7058 0 4 625 2010 214 16 221 chr1 5297415 5297680 -191897752 - RMER19C LTR ERVK -371 240 40 4 625 3104 12 0 9 chr1 5297680 5298029 -191897403 + ORR1A0 LTR MaLR 1 346 0 4 625 13822 57 12 2 chr1 5298029 5299804 -191895628 + ORR1A0-int LTR MaLR 1 1792 0 4 625 3018 23 0 9 chr1 5299804 5300153 -191895279 + ORR1A0 LTR MaLR 1 346 0 4 625 2010 214 16 221 chr1 5300153 5300191 -191895241 - RMER19C LTR ERVK -572 39 3 4 625 324 0 0 0 chr1 5302369 5302405 -191893027 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 625 306 0 0 0 chr1 5302405 5302438 -191892994 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 625 522 229 67 30 chr1 5302478 5302613 -191892819 + B1_Mm SINE Alu 1 140 -7 4 625 2690 160 84 58 chr1 5302760 5303317 -191892115 - RMER15 LTR ERVL 0 575 4 4 625 28 71 0 0 chr1 5303461 5303517 -191891915 + AT_rich Low_complexity Low_complexity 1 56 0 4 625 527 296 21 7 chr1 5303637 5303780 -191891652 - ID_B1 SINE B4 0 224 80 4 625 863 242 65 43 chr1 5304486 5304666 -191890766 + L1_Rod LINE L1 465 644 -6528 4 625 786 167 54 54 chr1 5304666 5304850 -191890582 + B2_Mm2 SINE B2 1 184 -11 4 625 863 242 65 43 chr1 5304850 5305041 -191890391 + L1_Rod LINE L1 645 844 -6328 4 625 370 342 25 8 chr1 5306497 5306615 -191888817 - PB1D7 SINE Alu 0 120 1 4 625 525 281 0 9 chr1 5306832 5306947 -191888485 + RSINE1 SINE B4 2 115 -50 4 625 249 33 0 0 chr1 5307008 5307038 -191888394 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 625 337 253 9 104 chr1 5307201 5307307 -191888125 - RSINE1 SINE B4 -195 97 2 4 625 402 282 96 27 chr1 5307482 5307683 -191887749 + ORR1E LTR MaLR 3 203 -171 4 625 223 269 15 0 chr1 5308760 5308827 -191886605 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 4 625 317 267 7 0 chr1 5308836 5308951 -191886481 + (TCCA)n Simple_repeat Simple_repeat 2 117 0 4 625 261 0 0 0 chr1 5308951 5308980 -191886452 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 625 317 267 7 0 chr1 5308980 5308999 -191886433 + (TCCA)n Simple_repeat Simple_repeat 3 21 0 4 625 21 0 0 0 chr1 5309081 5309102 -191886330 + AT_rich Low_complexity Low_complexity 1 21 0 4 625 21 57 0 0 chr1 5309182 5309217 -191886215 + AT_rich Low_complexity Low_complexity 1 35 0 4 625 4449 136 16 35 chr1 5310432 5311214 -191884218 - RMER17A LTR ERVK 0 751 2 4 625 257 331 40 0 chr1 5311434 5311528 -191883904 + B1F1 SINE Alu 6 105 -12 4 625 1941 148 3 10 chr1 5314233 5314546 -191880886 - RLTR10E LTR ERVK 0 311 1 4 625 670 295 48 5 chr1 5314548 5314756 -191880676 + MER82 DNA MER2_type 25 241 -412 4 625 270 298 156 36 chr1 5315400 5315567 -191879865 + MIR SINE MIR 26 212 -50 4 625 726 373 4 0 chr1 5315583 5315816 -191879616 + ORR1E-int LTR MaLR 1069 1302 -278 4 625 1422 238 42 53 chr1 5315818 5315855 -191879577 - ORR1D1 LTR MaLR 0 374 342 4 625 1095 210 316 12 chr1 5315855 5316178 -191879254 - MTC LTR MaLR 0 421 1 4 625 1422 238 42 53 chr1 5316178 5316518 -191878914 - ORR1D1 LTR MaLR -33 341 1 4 625 1931 226 115 56 chr1 5316531 5317121 -191878311 - ORR1D1-int LTR MaLR -587 783 159 4 625 732 105 0 133 chr1 5317121 5317264 -191878168 + ORR1A2 LTR MaLR 1 124 -203 4 625 3408 154 80 56 chr1 5317267 5318120 -191877312 + RMER17D LTR ERVK 1 873 -16 4 625 297 0 0 0 chr1 5318133 5318166 -191877266 + (T)n Simple_repeat Simple_repeat 1 33 0 4 625 1501 96 10 0 chr1 5318174 5318382 -191877050 + ORR1A2 LTR MaLR 118 327 0 4 625 859 259 48 45 chr1 5318382 5318676 -191876756 - ORR1D1-int LTR MaLR -198 176 2 4 625 453 75 0 0 chr1 5318676 5318743 -191876689 + L1Md_F3 LINE L1 5891 5957 -627 4 625 16999 69 1 2 chr1 5318742 5321091 -191874341 - L1_Mm LINE L1 -1 5882 3536 4 625 8191 74 8 0 chr1 5321091 5322250 -191873182 + L1_Mm LINE L1 2366 3533 -2350 4 625 346 232 0 0 chr1 5322250 5322319 -191873113 + ORR1E-int LTR MaLR 1293 1361 -9 4 625 422 300 144 15 chr1 5322327 5322459 -191872973 + ORR1E LTR MaLR 1 149 -210 4 625 379 330 17 0 chr1 5322486 5322604 -191872828 + ID_B1 SINE B4 105 224 0 4 625 22 35 0 0 chr1 5323103 5323132 -191872300 + AT_rich Low_complexity Low_complexity 1 29 0 4 625 26 82 0 0 chr1 5323938 5323999 -191871433 + AT_rich Low_complexity Low_complexity 1 61 0 4 625 297 0 0 0 chr1 5324091 5324124 -191871308 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 625 313 339 90 12 chr1 5324870 5325037 -191870395 - MLT1J1 LTR MaLR -246 198 19 4 625 377 252 40 115 chr1 5325289 5325437 -191869995 + MT2B2 LTR ERVL 101 237 -347 4 625 314 297 11 0 chr1 5325441 5325532 -191869900 - RMER1B Other Other -766 300 209 4 625 286 293 37 0 chr1 5325705 5325787 -191869645 - MTEb LTR MaLR -1 378 294 4 625 895 265 38 45 chr1 5325939 5326290 -191869142 + RLTR18B LTR ERVK 3 307 -309 4 625 1066 291 74 33 chr1 5326304 5326667 -191868765 + RLTR18B LTR ERVK 132 509 -3 4 625 2482 161 98 8 chr1 5326895 5327372 -191868060 + RLTR11A2 LTR ERVK 8 527 0 4 625 529 119 16 71 chr1 5327433 5327560 -191867872 - Lx LINE L1 -2 6652 6533 4 625 893 259 19 38 chr1 5328075 5328392 -191867040 + MYSERV16_I-int LTR ERVK 4321 4631 -1919 4 625 60 15 0 0 chr1 5328392 5328459 -191866973 + AT_rich Low_complexity Low_complexity 1 67 0 4 625 1140 231 114 91 chr1 5328484 5329162 -191866270 + MYSERV16_I-int LTR ERVK 328 1020 -1306 4 625 3089 210 38 14 chr1 5329176 5330028 -191865404 + MYSERV16_I-int LTR ERVK 1485 2262 -64 4 625 1837 187 142 13 chr1 5330033 5330499 -191864933 + RLTR11A LTR ERVK 3 528 0 4 625 261 315 118 65 chr1 5330580 5330733 -191864699 - MTEb LTR MaLR -98 261 101 4 625 1181 191 45 162 chr1 5331599 5331956 -191863476 + ORR1C2 LTR MaLR 1 315 -69 4 625 491 130 27 18 chr1 5331980 5332090 -191863342 + GA-rich Low_complexity Low_complexity 2 112 0 4 625 6263 133 35 18 chr1 5332444 5334430 -191861002 + L1Md_F LINE L1 177 2198 -3685 4 625 843 190 6 52 chr1 5334430 5334602 -191860830 - RLTR44B LTR ERVK -285 164 1 4 625 5059 63 1 9 chr1 5334602 5335278 -191860154 - RLTR44-int LTR ERVK 0 2812 2142 4 625 903 323 52 48 chr1 5335517 5336417 -191859015 - RLTR44-int LTR ERVK -1152 5329 4426 4 625 225 229 0 141 chr1 5336712 5336783 -191858649 - MLT1F LTR MaLR -101 447 387 4 625 251 259 35 35 chr1 5336833 5336949 -191858483 - RLTR44-int LTR ERVK -3815 4402 4287 4 625 3886 293 37 46 chr1 5337168 5340298 -191855134 - RLTR44-int LTR ERVK -3137 3405 659 4 625 33803 35 1 0 chr1 5340474 5346335 -191849097 + L1Md_T LINE L1 1 5589 -297 4 625 9056 4 0 0 chr1 5346335 5347331 -191848101 + L1Md_T LINE L1 5590 6585 0 4 625 587 185 0 0 chr1 5347363 5347471 -191847961 - RLTR44-int LTR ERVK -1831 981 874 4 625 323 167 0 0 chr1 5347481 5347535 -191847897 - RLTR44-int LTR ERVK -2756 56 3 4 625 1807 151 156 36 chr1 5347553 5347911 -191847521 - RLTR44A LTR ERVK 0 405 5 4 625 23116 98 10 3 chr1 5347911 5352275 -191843157 + L1_Mus1 LINE L1 2241 6567 0 4 625 751 260 17 11 chr1 5353230 5353405 -191842027 + B3 SINE B2 9 184 -32 4 625 697 248 101 26 chr1 5353786 5353968 -191841464 - L1_Rod LINE L1 -2401 3446 3245 4 625 453 36 0 0 chr1 5353968 5354023 -191841409 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 625 697 248 101 26 chr1 5354023 5354258 -191841174 - L1_Rod LINE L1 -2603 3244 2999 4 625 12154 159 45 20 chr1 5354268 5356497 -191838935 - Lx4B LINE L1 -50 7008 4636 4 625 225 0 0 0 chr1 5356497 5356522 -191838910 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 625 12154 148 50 31 chr1 5356522 5357786 -191837646 - Lx4B LINE L1 -1242 4635 3358 4 625 2097 247 41 41 chr1 5357819 5358077 -191837355 - L1_Rod LINE L1 -2817 3030 2776 4 625 3960 21 6 33 chr1 5358077 5358565 -191836867 + IAPLTR2_Mm LTR ERVK 1 475 0 4 625 2097 247 41 41 chr1 5358565 5359111 -191836321 - L1_Rod LINE L1 -3072 2775 2226 4 625 1893 107 20 10 chr1 5359130 5359422 -191836010 - L1_Mus3 LINE L1 -1 6637 6343 4 625 324 0 0 0 chr1 5359550 5359586 -191835846 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 625 1487 300 144 15 chr1 5359611 5360464 -191834968 - Lx9 LINE L1 -206 7438 6476 4 625 355 182 0 0 chr1 5360466 5360532 -191834900 - L1_Rod LINE L1 -942 4905 4840 4 625 1005 206 55 37 chr1 5361070 5361375 -191834057 - BGLII_B LTR ERVK -413 279 1 4 625 719 277 116 23 chr1 5361420 5361852 -191833580 - L1_Rod LINE L1 -1012 4835 4364 4 625 1548 221 59 5 chr1 5361941 5362328 -191833104 - RMER1C Other Other -4 1338 931 4 625 1742 268 36 42 chr1 5362327 5363026 -191832406 - L1_Rod LINE L1 -1452 4395 3690 4 625 3095 32 62 0 chr1 5363026 5363399 -191832033 + MTA_Mm LTR MaLR 1 396 0 4 625 1742 268 36 42 chr1 5363399 5363533 -191831899 - L1_Rod LINE L1 -2158 3689 3567 4 625 1321 274 88 18 chr1 5363779 5364277 -191831155 + Lx7 LINE L1 6801 7333 -363 4 625 249 213 28 0 chr1 5364277 5364360 -191831072 + T-rich Low_complexity Low_complexity 1 85 0 5 625 277 250 102 17 chr1 5364490 5364608 -191830824 - L1M4 LINE L1 -2565 3581 3454 5 625 336 280 20 20 chr1 5364710 5364856 -191830576 + L1_Rod LINE L1 2092 2237 -3610 5 625 2441 117 2 9 chr1 5364832 5365254 -191830178 + MusHAL1 LINE L1 1780 2198 -514 5 625 15318 89 12 12 chr1 5365253 5368350 -191827082 - L1Md_F LINE L1 -2419 3464 409 5 625 207 0 0 0 chr1 5368356 5368379 -191827053 + (T)n Simple_repeat Simple_repeat 1 23 0 5 625 1415 237 110 58 chr1 5368379 5368898 -191826534 + RLTR40 LTR ERVK 53 598 -219 5 625 24 0 0 0 chr1 5369767 5369791 -191825641 + AT_rich Low_complexity Low_complexity 1 24 0 5 625 1244 87 40 23 chr1 5369813 5369990 -191825442 - B2_Mm2 SINE B2 -14 181 2 5 625 229 293 35 35 chr1 5370403 5370488 -191824944 + MTEa LTR MaLR 272 356 -23 5 625 551 218 181 34 chr1 5370688 5370925 -191824507 - RLTR10A LTR ERVK 0 411 140 5 625 486 0 0 0 chr1 5370970 5371024 -191824408 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 625 288 271 141 0 chr1 5371999 5372084 -191823348 + PB1 SINE Alu 26 122 -5 5 625 23 54 0 0 chr1 5372246 5372283 -191823149 + AT_rich Low_complexity Low_complexity 1 37 0 5 625 388 175 10 10 chr1 5372872 5372970 -191822462 + GA-rich Low_complexity Low_complexity 2 99 0 5 625 485 30 30 0 chr1 5373097 5373163 -191822269 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 5 78 278 326 139 16 chr1 5373780 5373967 -191821465 + MER74A LTR ERVL 276 485 -73 5 626 473 298 136 51 chr1 5374027 5374204 -191821228 + B3 SINE B2 1 192 -24 5 626 690 35 0 0 chr1 5374206 5374291 -191821141 + (CTA)n Simple_repeat Simple_repeat 3 87 0 5 626 428 288 37 15 chr1 5374315 5374449 -191820983 - Lx6 LINE L1 -334 7126 6990 5 626 656 294 219 7 chr1 5374464 5374742 -191820690 - MTC LTR MaLR -52 369 33 5 626 1004 158 8 8 chr1 5374764 5375017 -191820415 + GA-rich Low_complexity Low_complexity 1 253 0 5 626 2665 73 34 17 chr1 5375019 5375434 -191819998 - MusHAL1 LINE L1 -726 1986 1565 5 626 254 200 45 30 chr1 5375513 5375580 -191819852 + L1M4 LINE L1 725 792 -5750 5 626 486 289 94 28 chr1 5375656 5376047 -191819385 + L1M4 LINE L1 5314 5734 -440 5 626 611 175 0 0 chr1 5376049 5376152 -191819280 - RLTR26 LTR ERVK 0 642 540 5 626 21 0 0 0 chr1 5376217 5376238 -191819194 + AT_rich Low_complexity Low_complexity 1 21 0 5 626 15000 133 41 14 chr1 5376238 5380024 -191815408 - Lx4A LINE L1 -9 7049 3141 5 626 3837 118 70 9 chr1 5380038 5381371 -191814061 - L1_Mus4 LINE L1 -12 6624 5213 5 626 6567 128 6 3 chr1 5381373 5382483 -191812949 - Lx4A LINE L1 -2725 3152 2039 5 626 3152 115 0 3 chr1 5382468 5382655 -191812777 - Lx4A LINE L1 -5818 1268 1033 5 626 516 59 0 0 chr1 5382655 5382723 -191812709 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 626 3152 181 3 32 chr1 5382723 5383226 -191812206 - Lx4A LINE L1 -6054 1032 530 5 626 703 225 82 12 chr1 5383227 5383398 -191812034 + RLTR18B LTR ERVK 233 415 -97 5 626 3107 216 71 39 chr1 5383401 5384482 -191810950 + MYSERV-int LTR ERVK 5433 6548 -2 5 626 2086 136 20 8 chr1 5384484 5384839 -191810593 + RLTR15 LTR ERVK 1 359 0 5 626 463 398 36 25 chr1 5384901 5384956 -191810476 - MER21B LTR ERV1 -58 805 757 5 626 1248 266 18 34 chr1 5384956 5385341 -191810091 + MTE2a LTR MaLR 1 379 0 5 626 463 398 36 25 chr1 5385341 5385566 -191809866 - MER21B LTR ERV1 -107 756 522 5 626 4326 214 57 16 chr1 5386224 5387267 -191808165 - Lx5 LINE L1 -11 7039 5955 5 626 2459 153 69 10 chr1 5387259 5387740 -191807692 - L1_Mur2 LINE L1 -46 5831 5323 5 626 4790 107 63 12 chr1 5389979 5390616 -191804816 + Lx3A LINE L1 6195 6840 -141 5 626 180 0 0 0 chr1 5390616 5390636 -191804796 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 5 626 4790 107 63 12 chr1 5390636 5390744 -191804688 + Lx3A LINE L1 6841 6978 -3 5 626 305 296 88 0 chr1 5391282 5391407 -191804025 + L1M4 LINE L1 3746 3881 -2265 5 626 969 160 88 4 chr1 5391534 5391671 -191803761 + Lx5 LINE L1 1755 1902 -3975 5 626 207 0 0 0 chr1 5391671 5391694 -191803738 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 5 626 969 160 88 4 chr1 5391694 5391782 -191803650 + Lx5 LINE L1 1903 1999 -3878 5 626 2223 73 3 0 chr1 5391784 5392084 -191803348 - L1_Mus1 LINE L1 -66 6501 6201 5 626 689 74 0 85 chr1 5392081 5392199 -191803233 + L1_Mus1 LINE L1 6084 6191 -376 5 626 11497 199 17 103 chr1 5392192 5392975 -191802457 + Lx5 LINE L1 2651 3421 -2459 5 626 1185 61 0 7 chr1 5392975 5393123 -191802309 - B1_Mus1 SINE Alu 0 148 2 5 626 11497 199 17 103 chr1 5393123 5395509 -191799923 + Lx5 LINE L1 3422 5529 -351 5 626 2730 70 88 0 chr1 5395509 5395896 -191799536 + BGLII LTR ERVK 1 421 0 5 626 11497 187 44 9 chr1 5395896 5397366 -191798066 + Lx5 LINE L1 5530 7050 0 5 626 640 254 113 37 chr1 5397470 5397825 -191797607 + L1MC2 LINE L1 5783 6164 -180 5 626 525 283 158 4 chr1 5398319 5398538 -191796894 + MIRc SINE MIR 12 266 -2 5 626 5637 183 19 14 chr1 5398747 5399824 -191795608 + MERVL_2A-int LTR ERVL 1652 2734 -3027 5 626 620 245 7 7 chr1 5399828 5399968 -191795464 + RMER1B Other Other 608 747 -319 5 626 305 150 0 0 chr1 5399969 5400029 -191795403 + RMER1B Other Other 1007 1066 0 5 626 357 228 34 81 chr1 5400037 5400185 -191795247 + MERVL_2A-int LTR ERVL 2734 2874 -2887 5 626 484 240 0 0 chr1 5400153 5400249 -191795183 + MERVL_2A-int LTR ERVL 4209 4304 -1457 5 626 2733 123 14 0 chr1 5400255 5400668 -191794764 + L1_Mus3 LINE L1 6214 6632 -6 5 626 849 178 83 15 chr1 5400669 5400874 -191794558 + MERVL_2A-int LTR ERVL 5543 5761 0 5 626 1060 224 235 84 chr1 5400874 5401337 -191794095 + MT2A LTR ERVL 1 533 0 5 626 582 298 13 7 chr1 5401344 5401496 -191793936 - MLT2B1 LTR ERVL -343 177 25 5 626 324 111 0 0 chr1 5401604 5401658 -191793774 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 626 810 313 71 18 chr1 5403395 5403675 -191791757 + MER54A LTR ERVL 600 894 -7 5 626 970 318 71 20 chr1 5403721 5404212 -191791220 - L1MC3 LINE L1 -927 6858 6343 5 626 468 0 0 0 chr1 5404281 5404333 -191791099 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 626 504 130 0 0 chr1 5404333 5404425 -191791007 + (GA)n Simple_repeat Simple_repeat 2 93 0 5 626 396 0 0 0 chr1 5404708 5404752 -191790680 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 626 262 316 188 12 chr1 5404790 5404960 -191790472 - MIR SINE MIR -46 216 17 5 626 410 299 7 35 chr1 5406239 5406381 -191789051 + MLT1A1 LTR MaLR 268 405 -3 5 626 531 45 0 0 chr1 5407989 5408055 -191787377 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 5 626 788 128 11 114 chr1 5408185 5408361 -191787071 + L1VL4 LINE L1 436 593 -5709 5 626 290 393 42 72 chr1 5408623 5409110 -191786322 + MER34 LTR ERV1 1 483 -88 5 626 218 188 62 0 chr1 5410099 5410147 -191785285 + (TATG)n Simple_repeat Simple_repeat 4 54 0 5 626 720 233 60 11 chr1 5410701 5410883 -191784549 - RMER19C LTR ERVK 0 611 421 5 626 872 257 7 85 chr1 5410946 5411227 -191784205 + RLTR9A LTR ERVK 110 368 0 5 626 186 71 0 0 chr1 5411533 5411561 -191783871 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 5 626 2599 175 56 78 chr1 5411615 5412335 -191783097 + ETnERV2-int LTR ERVK 1059 1762 -5644 5 626 814 130 0 0 chr1 5412331 5412469 -191782963 + ETnERV2-int LTR ERVK 2036 2173 -3233 5 626 360 183 12 0 chr1 5412479 5412561 -191782871 + ETnERV2-int LTR ERVK 2409 2491 -2915 5 626 2358 168 63 50 chr1 5412582 5413237 -191782195 + ETnERV2-int LTR ERVK 3366 3866 -1540 5 626 34920 31 5 7 chr1 5413510 5418659 -191776773 + L1Md_T LINE L1 452 5585 -298 5 626 7996 37 31 0 chr1 5418660 5419626 -191775806 + L1Md_T LINE L1 5587 6582 0 5 626 36307 16 1 8 chr1 5419917 5425723 -191769709 + L1Md_A LINE L1 1 5586 -297 5 626 8773 17 0 0 chr1 5425723 5426718 -191768714 + L1Md_A LINE L1 5587 6581 -1 5 626 771 246 47 80 chr1 5426804 5427078 -191768354 + RLTR9A LTR ERVK 104 368 0 5 626 1550 233 21 35 chr1 5427081 5427419 -191768013 - RMER19B LTR ERVK -261 641 309 5 626 1357 203 105 16 chr1 5427442 5427747 -191767685 + ORR1B2 LTR MaLR 28 359 -8 5 626 583 277 51 36 chr1 5427981 5428176 -191767256 - B3A SINE B2 0 198 1 5 626 219 69 0 0 chr1 5428757 5428786 -191766646 + (CATA)n Simple_repeat Simple_repeat 3 31 0 5 626 768 77 0 0 chr1 5428787 5428891 -191766541 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 5 626 311 291 78 0 chr1 5429207 5429310 -191766122 + ORR1D2 LTR MaLR 6 116 -254 5 626 1103 189 35 7 chr1 5429310 5429598 -191765834 + L1_Mur3 LINE L1 1326 1621 -4259 5 626 465 264 20 32 chr1 5429592 5429784 -191765648 + L1VL4 LINE L1 285 567 -5791 5 626 632 197 57 6 chr1 5429788 5429946 -191765486 + Lx2 LINE L1 6832 6997 0 5 626 24 0 0 0 chr1 5429973 5429997 -191765435 + AT_rich Low_complexity Low_complexity 1 24 0 5 626 1026 151 47 2 chr1 5429997 5430276 -191765156 + L1_Mur1 LINE L1 1021 1454 -2460 5 626 2788 26 9 0 chr1 5430276 5430616 -191764816 - MTA_Mm LTR MaLR -53 343 1 5 626 4001 119 15 4 chr1 5430617 5431292 -191764140 + L1_Mur1 LINE L1 1927 2608 -3278 5 626 540 282 117 23 chr1 5431322 5431937 -191763495 - L1MB1 LINE L1 -125 6178 5477 5 626 534 246 123 0 chr1 5431952 5432131 -191763301 + MER2 DNA MER2_type 92 292 -53 5 626 806 246 254 48 chr1 5432212 5432500 -191762932 - RMER12 LTR ERVK 0 1322 974 5 626 591 71 0 0 chr1 5432500 5432585 -191762847 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 626 806 246 254 48 chr1 5432585 5432835 -191762597 - RMER12 LTR ERVK -349 973 674 5 626 22138 139 33 18 chr1 5432845 5437655 -191757777 + L1_Mus2 LINE L1 242 5109 -774 5 626 6726 90 6 0 chr1 5437651 5438689 -191756743 + L1_Mus2 LINE L1 5520 6565 -1 5 626 285 109 0 0 chr1 5438711 5438757 -191756675 - RMER12 LTR ERVK -638 684 639 5 626 1064 103 7 0 chr1 5438759 5438904 -191756528 + B1_Mus1 SINE Alu 2 147 -1 5 626 210 105 0 0 chr1 5438917 5438955 -191756477 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 626 3117 144 128 8 chr1 5438958 5439545 -191755887 - RMER12 LTR ERVK -665 657 1 5 626 3100 73 9 36 chr1 5439819 5440258 -191755174 - L1Md_F2 LINE L1 -12 6570 6144 5 626 375 23 0 0 chr1 5440278 5440322 -191755110 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 626 13599 192 52 15 chr1 5440715 5445478 -191749954 - Lx5 LINE L1 -3 7047 2056 5 626 483 82 0 0 chr1 5445478 5445551 -191749881 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 626 13599 199 31 12 chr1 5445551 5446657 -191748775 - Lx5 LINE L1 -3822 2055 882 5 626 252 294 19 32 chr1 5446973 5447127 -191748305 - L1M2 LINE L1 -837 5466 5317 5 626 396 0 0 0 chr1 5447219 5447263 -191748169 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 626 216 0 0 0 chr1 5447263 5447286 -191748146 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 626 771 234 35 0 chr1 5448371 5448542 -191746890 - RMER4B LTR ERVK -391 194 18 5 626 10367 169 36 79 chr1 5448566 5449402 -191746030 - MurERV4-int LTR ERVK -12 5248 4403 5 626 4273 56 2 2 chr1 5449402 5449935 -191745497 - L1_Mus2 LINE L1 -1 6565 6033 5 626 10367 169 36 79 chr1 5449935 5451471 -191743961 - MurERV4-int LTR ERVK -858 4402 2945 5 626 4203 69 21 11 chr1 5451471 5452029 -191743403 - LTRIS2 LTR ERV1 0 564 1 5 626 10367 169 36 79 chr1 5452029 5452158 -191743274 - MurERV4-int LTR ERVK -2316 2944 2852 5 626 1059 122 0 0 chr1 5452200 5452347 -191743085 - B1_Mus2 SINE Alu 0 147 1 5 626 3550 186 51 22 chr1 5452347 5453127 -191742305 - MurERV4-int LTR ERVK -2394 2866 2064 5 626 269 257 119 0 chr1 5453144 5453245 -191742187 - Lx4B LINE L1 -9 7049 6937 6 626 596 151 28 0 chr1 5453236 5453342 -191742090 - Lx2B LINE L1 -691 6309 6201 6 626 4919 162 40 57 chr1 5453330 5454425 -191741007 - Lx2B LINE L1 -141 5736 4660 6 626 5745 231 37 35 chr1 5454425 5455949 -191739483 - MurERV4-int LTR ERVK -3195 2065 538 5 626 1918 126 28 6 chr1 5455949 5456268 -191739164 - L1_Mus3 LINE L1 -2 6636 6311 6 626 488 236 8 23 chr1 5456453 5456583 -191738849 - MurERV4-int LTR ERVK -5084 176 49 5 626 1167 318 55 57 chr1 5456627 5457193 -191738239 - RMER4B LTR ERVK -4 581 17 6 626 1152 75 0 0 chr1 5458491 5458638 -191736794 + B1_Mm SINE Alu 1 147 0 6 626 223 49 49 0 chr1 5458638 5458679 -191736753 + (TAAAAA)n Simple_repeat Simple_repeat 5 47 0 6 626 7274 75 1 2 chr1 5458778 5459984 -191735448 - L1_Mus1 LINE L1 0 6567 5364 6 626 531 0 0 0 chr1 5459985 5460044 -191735388 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 6 626 850 136 6 28 chr1 5460044 5460226 -191735206 + CT-rich Low_complexity Low_complexity 3 180 0 6 626 294 29 0 0 chr1 5460228 5460263 -191735169 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 626 943 110 15 7 chr1 5460263 5460400 -191735032 - B1_Mus2 SINE Alu -9 138 1 6 626 287 151 0 19 chr1 5460400 5460454 -191734978 - L1_Mur2 LINE L1 -516 5361 5309 6 626 180 0 0 0 chr1 5460455 5460475 -191734957 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 626 4958 109 41 11 chr1 5460481 5461241 -191734191 - L1_Mus1 LINE L1 -2 6565 5783 6 626 3371 78 30 7 chr1 5461240 5461702 -191733730 - L1Md_F2 LINE L1 -12 6570 6098 6 626 469 169 0 0 chr1 5461705 5461782 -191733650 + L1VL1 LINE L1 190 266 -6156 6 626 30123 90 8 4 chr1 5461782 5466866 -191728566 + L1Md_F2 LINE L1 480 5585 -298 6 626 7913 53 2 8 chr1 5466867 5467869 -191727563 + L1Md_F2 LINE L1 5587 6582 0 6 626 24751 88 2 1 chr1 5467869 5471458 -191723974 + L1_Mm LINE L1 2148 5740 -143 6 626 14645 128 4 3 chr1 5471456 5474177 -191721255 - L1VL1 LINE L1 -2175 3708 1052 6 626 429 320 22 59 chr1 5474336 5474774 -191720658 - L1VL1 LINE L1 -6022 616 261 6 626 3423 69 58 0 chr1 5474910 5475359 -191720073 - MT2C_Mm LTR ERVL 0 475 1 6 626 713 44 0 0 chr1 5475359 5475450 -191719982 - MERVL_2A-int LTR ERVL 0 5485 5395 6 626 11779 69 1 0 chr1 5475448 5476995 -191718437 - MERVL_2A-int LTR ERVL -577 4908 3361 6 626 2851 111 20 41 chr1 5476995 5477086 -191718346 + RLTR1C LTR ERV1 1 91 -412 6 626 968 117 0 7 chr1 5477086 5477241 -191718191 + (GAA)n Simple_repeat Simple_repeat 3 156 0 6 626 2851 124 17 45 chr1 5477241 5477682 -191717750 + RLTR1C LTR ERV1 92 605 0 6 626 19939 86 16 8 chr1 5477682 5480998 -191714434 - MERVL_2A-int LTR ERVL -2295 3466 1 6 626 3761 60 19 0 chr1 5480998 5481464 -191713968 - MT2C_Mm LTR ERVL 0 475 1 6 626 4236 96 70 0 chr1 5481657 5482293 -191713139 - L1_Mus2 LINE L1 0 6566 5906 6 626 5481 142 11 2 chr1 5482575 5483483 -191711949 + Lx LINE L1 5734 6649 -5 6 626 231 246 16 16 chr1 5483648 5483710 -191711722 + RMER15 LTR ERVL 4 65 -510 6 626 460 256 436 46 chr1 5483726 5483985 -191711447 + RMER15 LTR ERVL 28 387 -188 6 626 329 256 0 0 chr1 5484143 5484233 -191711199 - Lx7 LINE L1 -51 7645 7556 6 626 988 271 57 27 chr1 5484219 5484591 -191710841 - Lx9 LINE L1 -852 6792 6410 6 626 226 283 0 0 chr1 5484631 5484684 -191710748 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 626 21 36 0 0 chr1 5484687 5484715 -191710717 + AT_rich Low_complexity Low_complexity 1 28 0 6 626 272 298 51 44 chr1 5485450 5485587 -191709845 + L1M4 LINE L1 5425 5562 -612 6 626 267 228 160 30 chr1 5485600 5485731 -191709701 + L1M4 LINE L1 5318 5465 -713 6 626 402 330 0 9 chr1 5485894 5486010 -191709422 + ID_B1 SINE B4 103 217 -7 6 626 381 22 0 0 chr1 5486015 5486061 -191709371 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 626 399 275 13 63 chr1 5486091 5486250 -191709182 - Lx8 LINE L1 -1073 6400 6250 6 626 646 341 33 7 chr1 5486268 5486543 -191708889 + Lx8 LINE L1 7047 7328 -145 6 626 5495 145 29 18 chr1 5486658 5487160 -191708272 + L1VL4 LINE L1 362 856 -5801 6 626 2862 77 54 3 chr1 5487160 5487551 -191707881 - RLTR10A LTR ERVK 0 411 1 6 626 14281 108 29 15 chr1 5487551 5489847 -191705585 + L1VL4 LINE L1 827 3135 -779 6 626 477 0 0 0 chr1 5489847 5489900 -191705532 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 626 14281 136 28 14 chr1 5489900 5490720 -191704712 + L1VL4 LINE L1 3136 3980 -1906 6 626 1078 199 0 13 chr1 5490718 5490957 -191704475 - L1_Mur3 LINE L1 -3086 2794 2559 6 626 1227 280 18 15 chr1 5491021 5491420 -191704012 - L1_Mur3 LINE L1 -7199 529 130 6 626 200 209 0 0 chr1 5492225 5492268 -191703164 + A-rich Low_complexity Low_complexity 2 44 0 6 626 507 317 116 6 chr1 5492502 5492683 -191702749 + B4A SINE B4 7 207 -85 6 626 382 296 11 17 chr1 5492701 5492849 -191702583 + (CA)n Simple_repeat Simple_repeat 2 149 0 6 626 746 67 9 0 chr1 5492849 5492954 -191702478 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 626 382 296 11 17 chr1 5492954 5492984 -191702448 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 626 407 308 6 6 chr1 5493072 5493242 -191702190 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 626 246 136 0 0 chr1 5493285 5493329 -191702103 + (CATA)n Simple_repeat Simple_repeat 1 44 0 6 626 2044 173 45 4 chr1 5494023 5494493 -191700939 - L1_Mur2 LINE L1 -4124 1753 1265 6 626 300 254 100 116 chr1 5494614 5494855 -191700577 - Lx5 LINE L1 -2 7048 6812 6 626 450 337 11 48 chr1 5495361 5495548 -191699884 - MER47B DNA MER2_type 0 418 239 6 626 357 270 59 10 chr1 5495593 5495694 -191699738 - MTEb LTR MaLR -20 359 254 6 626 1068 259 78 49 chr1 5495890 5496235 -191699197 + ORR1E LTR MaLR 3 357 -2 6 626 251 253 101 0 chr1 5496514 5496593 -191698839 + B1F SINE Alu 28 114 -35 6 626 835 286 35 9 chr1 5496595 5496821 -191698611 + MTE2b LTR MaLR 3 234 -145 6 626 4644 76 8 0 chr1 5497847 5498695 -191696737 + L1_Mus2 LINE L1 5168 6021 -545 6 626 1323 62 26 3 chr1 5498695 5499003 -191696429 - MTA_Mm LTR MaLR -382 716 198 6 626 1791 40 0 0 chr1 5498998 5499221 -191696211 - MTA_Mm LTR MaLR -173 223 1 6 626 3128 53 12 3 chr1 5499221 5500000 -191695432 - MTA_Mm-int LTR MaLR 0 1098 20 6 626 3397 28 2 0 chr1 5500019 5500414 -191695018 - MTA_Mm LTR MaLR 0 396 1 1 626 238 35 0 0 chr1 5500414 5500443 -191694989 + L1_Mus1 LINE L1 6017 6045 -522 2 626 6774 168 42 7 chr1 5501280 5503237 -191692195 - Lx5 LINE L1 -377 6673 4636 3 626 5086 198 51 6 chr1 5503235 5503610 -191691822 - Lx5 LINE L1 -3440 2437 2044 3 626 351 0 0 0 chr1 5503610 5503649 -191691783 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 626 384 22 0 0 chr1 5503649 5503693 -191691739 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 626 5086 213 82 13 chr1 5503693 5504968 -191690464 - Lx5 LINE L1 -3834 2043 649 3 627 554 51 0 13 chr1 5505680 5505759 -191689673 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 627 592 235 109 51 chr1 5506120 5506295 -191689137 - B3A SINE B2 -8 190 6 7 627 2173 147 38 52 chr1 5506342 5506510 -191688922 + RLTR9B2 LTR ERVK 1 170 -250 8 627 1466 96 268 109 chr1 5506510 5506849 -191688583 + RLTR9C LTR ERVK 1 393 0 9 627 2173 147 38 52 chr1 5506849 5507104 -191688328 + RLTR9B2 LTR ERVK 171 418 -2 8 627 1379 259 85 13 chr1 5507179 5507564 -191687868 + MTD LTR MaLR 1 406 -13 1 627 435 320 63 47 chr1 5507588 5507778 -191687654 + B4A SINE B4 56 248 -44 1 627 1142 272 110 0 chr1 5507781 5508090 -191687342 - MTE2a LTR MaLR -1 378 36 1 627 340 23 0 0 chr1 5508095 5508138 -191687294 + RLTR13C2 LTR ERVK 634 676 -132 1 627 939 102 0 0 chr1 5508142 5508270 -191687162 - RLTR13D5 LTR ERVK -297 726 599 1 627 4875 122 9 68 chr1 5508438 5509291 -191686141 - RLTR13B4 LTR ERVK 0 803 1 1 627 459 202 0 0 chr1 5509335 5509439 -191685993 + CT-rich Low_complexity Low_complexity 2 105 0 1 627 236 333 52 72 chr1 5509522 5509619 -191685813 + B2_Mm2 SINE B2 4 98 -97 1 627 26 30 0 0 chr1 5509708 5509741 -191685691 + AT_rich Low_complexity Low_complexity 1 33 0 1 627 1642 244 34 5 chr1 5509761 5510168 -191685264 + MTD LTR MaLR 1 419 0 1 627 846 180 75 40 chr1 5510168 5510394 -191685038 + MTD-int LTR MaLR 1 234 -1024 1 627 417 308 100 26 chr1 5510445 5510613 -191684819 - RLTR15 LTR ERVK -73 286 103 2 627 1289 13 0 13 chr1 5510613 5510769 -191684663 + (TCTCCC)n Simple_repeat Simple_repeat 4 157 0 2 627 417 308 100 26 chr1 5510769 5510830 -191684602 - RLTR15 LTR ERVK -257 102 41 2 627 4310 197 80 22 chr1 5510883 5512010 -191683422 - MYSERV6-int LTR ERVK -63 8896 7787 2 627 461 290 43 43 chr1 5512032 5512216 -191683216 - RMER4A LTR ERVK -32 434 251 2 627 535 347 16 0 chr1 5512228 5512418 -191683014 - MYSERV6-int LTR ERVK -1435 5115 4923 2 627 3917 128 29 3 chr1 5512437 5513062 -191682370 - Lx LINE L1 -12 6642 6002 2 627 500 158 0 0 chr1 5513065 5513147 -191682285 - L1_Mm LINE L1 -1025 4858 4777 2 627 473 272 47 74 chr1 5513193 5513574 -191681858 - MYSERV6-int LTR ERVK -1772 4778 4546 2 627 2009 221 122 9 chr1 5513574 5514026 -191681406 + RLTR21 LTR ERVK 1 503 -1069 2 627 2774 189 14 4 chr1 5514020 5514529 -191680903 + RLTR25A LTR ERVK 109 622 -481 2 627 9305 165 48 8 chr1 5514530 5516379 -191679053 + Lx4B LINE L1 3188 5111 -766 2 627 31887 56 3 5 chr1 5516379 5521276 -191674156 - L1Md_F3 LINE L1 0 6584 1712 2 627 3682 191 46 22 chr1 5521276 5521435 -191673997 + Lx4B LINE L1 5099 5257 -620 2 627 273 57 0 0 chr1 5521435 5521470 -191673962 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 627 3682 191 46 22 chr1 5521470 5521981 -191673451 + Lx4B LINE L1 5258 5791 -86 2 627 1580 43 0 0 chr1 5521981 5522167 -191673265 + B2_Mm1a SINE B2 2 187 -6 3 627 3682 194 38 19 chr1 5522167 5522577 -191672855 + Lx4B LINE L1 5792 6218 -840 2 627 2114 239 54 42 chr1 5522547 5523098 -191672334 + Lx2B LINE L1 6397 6954 -46 3 627 669 206 59 59 chr1 5523101 5523271 -191672161 + RLTR25A LTR ERVK 596 765 -263 2 627 533 250 22 14 chr1 5523277 5523415 -191672017 + RLTR25A LTR ERVK 890 1028 0 2 627 3921 177 31 149 chr1 5523415 5524542 -191670890 + RLTR21 LTR ERVK 579 1572 0 2 627 5425 210 51 22 chr1 5524545 5525557 -191669875 - MYSERV6-int LTR ERVK -4351 4608 2636 2 627 3716 160 74 1 chr1 5525557 5526258 -191669174 - RMER6A LTR ERVK -4 752 1 3 627 5425 202 40 23 chr1 5526258 5526668 -191668764 - MYSERV6-int LTR ERVK -5241 3718 3301 2 627 4297 249 92 48 chr1 5526672 5526805 -191668627 - MYSERV6-int LTR ERVK -5895 3064 2861 2 627 1006 108 0 39 chr1 5526805 5526959 -191668473 - B1_Mus1 SINE Alu 0 148 1 3 627 4297 249 92 48 chr1 5526959 5528382 -191667050 - MYSERV6-int LTR ERVK -6099 2860 1439 2 627 945 312 39 4 chr1 5528382 5528686 -191666746 + MTE2b LTR MaLR 21 338 -41 3 627 904 232 10 15 chr1 5528695 5528872 -191666560 - MTB_Mm LTR MaLR -15 392 217 3 627 530 212 7 106 chr1 5528872 5529014 -191666418 + RLTR9A LTR ERVK 2 129 -239 3 627 241 254 0 0 chr1 5529183 5529250 -191666182 + A-rich Low_complexity Low_complexity 1 67 0 3 627 3605 153 143 36 chr1 5529330 5530263 -191665169 + RMER16-int LTR ERVK 255 1959 -5447 3 627 1827 187 81 5 chr1 5530266 5530675 -191664757 - L1Md_F LINE L1 -5589 930 491 4 627 1676 261 48 44 chr1 5530697 5531243 -191664189 - MYSERV-int LTR ERVK -2226 4324 3777 4 627 880 328 36 4 chr1 5531254 5531698 -191663734 - MYSERV6-int LTR ERVK -2114 1063 545 2 627 238 302 88 52 chr1 5532166 5532302 -191663130 - RLTR20D LTR ERVK -370 198 58 4 627 1717 228 43 86 chr1 5532606 5533071 -191662361 - RLTR41 LTR ERV1 -1 445 1 4 627 1149 57 0 0 chr1 5533856 5533997 -191661435 + B1_Mus2 SINE Alu 1 141 -6 4 627 212 0 36 0 chr1 5534000 5534028 -191661404 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 627 240 250 49 16 chr1 5534500 5534561 -191660871 - RMER21A LTR ERV1 -263 684 622 4 627 14265 58 6 2 chr1 5535167 5537730 -191657702 - L1Md_F2 LINE L1 -15 6567 4002 4 627 201 39 0 0 chr1 5537844 5537870 -191657562 + (T)n Simple_repeat Simple_repeat 1 26 0 4 627 270 136 0 0 chr1 5538948 5538992 -191656440 + (TGG)n Simple_repeat Simple_repeat 3 46 0 4 627 489 97 0 0 chr1 5539007 5539079 -191656353 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 627 363 349 32 0 chr1 5539112 5539238 -191656194 - B3A SINE B2 -65 133 4 5 627 544 283 72 49 chr1 5539335 5539640 -191655792 - RLTR15 LTR ERVK -47 312 1 5 627 7407 124 16 21 chr1 5539708 5541558 -191653874 + L1VL4 LINE L1 195 2032 -1527 5 627 11867 8 2 1 chr1 5541542 5542896 -191652536 + L1Md_A LINE L1 4231 5586 -297 5 627 8970 5 0 0 chr1 5542896 5543892 -191651540 + L1Md_A LINE L1 5587 6582 0 5 627 16141 173 21 8 chr1 5544017 5545143 -191650289 + L1_Mur1 LINE L1 2384 3534 -2352 5 627 2388 83 199 0 chr1 5545143 5545539 -191649893 + IAPLTR2_Mm LTR ERVK 1 475 0 5 627 16141 173 21 8 chr1 5545539 5547513 -191647919 + L1_Mur1 LINE L1 3535 5525 -361 5 627 1324 193 78 95 chr1 5547513 5547856 -191647576 + ORR1B1 LTR MaLR 61 394 0 5 627 350 323 141 18 chr1 5548475 5548759 -191646673 - L1MB8 LINE L1 -12 6166 5848 5 627 335 273 0 49 chr1 5548917 5548998 -191646434 - ID2 SINE ID -4 79 3 5 627 255 314 92 7 chr1 5549004 5549145 -191646287 - L1MB8 LINE L1 -539 5645 5493 5 627 5425 180 81 73 chr1 5549148 5550523 -191644909 + RMER16-int LTR ERVK 91 1458 -3948 6 627 6412 126 35 2 chr1 5550544 5551542 -191643890 + RMER16-int LTR ERVK 2488 3518 -1888 6 627 4045 193 67 66 chr1 5551542 5552726 -191642706 - L1_Mur3 LINE L1 -1223 4657 3473 6 627 3341 127 9 20 chr1 5552694 5553669 -191641763 + L1VL4 LINE L1 382 1341 -2218 6 627 4484 139 29 20 chr1 5553659 5554061 -191641371 + L1_Mur2 LINE L1 3646 4060 -1817 6 627 489 17 0 0 chr1 5554061 5554119 -191641313 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 627 4484 139 29 20 chr1 5554119 5554522 -191640910 + L1_Mur2 LINE L1 4061 4457 -1420 6 627 285 51 0 0 chr1 5554524 5554563 -191640869 - IAPEz-int LTR ERVK -1946 41 3 6 627 2394 91 21 195 chr1 5554565 5555140 -191640292 - IAPLTR2_Mm LTR ERVK 0 475 1 6 627 6669 50 2 14 chr1 5555140 5555981 -191639451 - IAPEz-int LTR ERVK 0 6481 5651 6 627 2555 88 0 3 chr1 5555974 5556317 -191639115 - IAPEz-int LTR ERVK -4781 1700 1359 6 627 3562 59 1 16 chr1 5556317 5556895 -191638537 - IAPEz-int LTR ERVK -5819 662 168 6 627 240 327 0 0 chr1 5556895 5556950 -191638482 - RLTR27 LTR ERVK -34 275 221 6 627 226 321 0 0 chr1 5556976 5557029 -191638403 - RLTR27 LTR ERVK -34 275 223 6 627 226 327 0 0 chr1 5557057 5557112 -191638320 - RLTR27 LTR ERVK -34 275 221 6 627 965 121 0 136 chr1 5557112 5557332 -191638100 - IAPEz-int LTR ERVK -6288 193 4 6 627 261 77 0 0 chr1 5557332 5557369 -191638063 - IAPEz-int LTR ERVK -1948 39 3 6 627 2340 95 21 196 chr1 5557371 5557947 -191637485 - IAPLTR2_Mm LTR ERVK 0 475 1 6 627 5909 193 42 16 chr1 5557950 5558686 -191636746 + Lx2 LINE L1 4484 5231 -652 6 627 288 0 0 0 chr1 5558686 5558718 -191636714 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 627 5909 193 42 16 chr1 5558718 5558761 -191636671 + Lx2 LINE L1 5232 5273 -610 6 627 189 0 0 0 chr1 5558761 5558782 -191636650 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 627 195 42 0 0 chr1 5558782 5558805 -191636627 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 627 252 0 0 0 chr1 5558805 5558832 -191636600 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 627 8051 138 47 4 chr1 5558832 5560370 -191635062 + Lx2 LINE L1 5274 6870 -127 6 627 527 0 16 0 chr1 5560370 5560433 -191634999 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 627 8051 124 48 1 chr1 5560433 5560543 -191634889 + Lx2 LINE L1 6871 6996 -1 6 627 7656 187 63 50 chr1 5560575 5561276 -191634156 - L1_Mur3 LINE L1 -2403 3477 2760 7 627 1038 63 35 7 chr1 5561276 5561419 -191634013 + B1_Mus2 SINE Alu 1 147 0 7 627 7656 203 58 40 chr1 5561419 5563328 -191632104 - L1_Mur3 LINE L1 -3121 2759 818 7 627 267 122 40 26 chr1 5563603 5563679 -191631753 + GA-rich Low_complexity Low_complexity 1 77 0 7 627 250 257 99 0 chr1 5563748 5563849 -191631583 - L1_Mur3 LINE L1 -7061 667 557 7 627 812 218 4 8 chr1 5563938 5564179 -191631253 - L1_Mur3 LINE L1 -4154 1726 1487 7 627 9568 53 8 4 chr1 5564167 5566140 -191629292 - L1Md_F3 LINE L1 -14 6570 4590 7 627 4112 36 2 42 chr1 5566140 5566662 -191628770 + L1Md_F2 LINE L1 6081 6581 -1 7 627 684 190 0 16 chr1 5567406 5567529 -191627903 + B3 SINE B2 1 121 -95 8 627 306 107 0 0 chr1 5567570 5567626 -191627806 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 627 1565 243 39 17 chr1 5568831 5569241 -191626191 - MTD LTR MaLR 0 419 1 8 627 478 313 129 39 chr1 5569520 5569776 -191625656 + B4A SINE B4 1 279 -13 8 627 429 36 0 0 chr1 5569797 5569852 -191625580 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 627 402 21 0 0 chr1 5569852 5569899 -191625533 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 627 774 182 132 16 chr1 5570927 5571117 -191624315 - B3 SINE B2 -1 215 4 8 627 613 286 42 19 chr1 5571672 5571886 -191623546 + MER2 DNA MER2_type 121 339 -6 8 627 198 0 0 0 chr1 5571888 5571910 -191623522 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 627 7921 73 53 3 chr1 5571963 5573679 -191621753 - L1Md_F2 LINE L1 -1 6581 4781 8 627 4683 146 41 10 chr1 5573678 5574961 -191620471 - L1Md_F2 LINE L1 -4386 1497 174 8 627 1434 224 35 63 chr1 5575584 5575771 -191619661 - MTD LTR MaLR -14 405 217 9 627 1261 111 11 5 chr1 5575771 5575961 -191619471 - B2_Mm1t SINE B2 -2 191 1 9 627 1434 232 30 65 chr1 5575961 5576167 -191619265 - MTD LTR MaLR -172 249 47 9 627 2438 297 49 58 chr1 5576171 5577325 -191618107 - Lx5 LINE L1 -50 7000 5857 9 627 338 255 31 21 chr1 5577325 5577421 -191618011 - MTD LTR MaLR -323 98 2 9 627 279 0 0 0 chr1 5579407 5579438 -191615994 + (TGG)n Simple_repeat Simple_repeat 2 32 0 9 627 225 0 0 0 chr1 5579456 5579481 -191615951 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 627 504 0 0 0 chr1 5579860 5579916 -191615516 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 627 423 291 19 0 chr1 5581289 5581392 -191614040 - PB1D10 SINE Alu -7 110 6 9 627 297 75 0 0 chr1 5581396 5581436 -191613996 + (A)n Simple_repeat Simple_repeat 1 40 0 9 627 639 0 0 0 chr1 5582678 5582749 -191612683 + (TC)n Simple_repeat Simple_repeat 2 72 0 9 627 360 266 18 71 chr1 5582937 5583107 -191612325 - L1MA9 LINE L1 -74 6238 6078 9 627 282 331 153 13 chr1 5583139 5583289 -191612143 + MER2 DNA MER2_type 135 305 -40 1 627 335 23 0 22 chr1 5583814 5583859 -191611573 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 627 516 106 0 0 chr1 5583859 5583944 -191611488 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 627 255 103 0 0 chr1 5587663 5587702 -191607730 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 627 180 409 11 0 chr1 5589866 5589954 -191605478 - MER5B DNA MER1_type -27 151 63 1 627 615 273 67 5 chr1 5590264 5590474 -191604958 - L1MC1 LINE L1 -17 6316 6094 1 627 802 183 139 0 chr1 5591384 5591586 -191603846 + Lx9 LINE L1 7304 7533 -111 1 627 315 0 0 0 chr1 5591618 5591653 -191603779 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 627 481 319 33 60 chr1 5594780 5594930 -191600502 - RSINE1 SINE B4 -17 148 3 1 627 3407 33 0 2 chr1 5596291 5596688 -191598744 + MTA_Mm LTR MaLR 1 396 0 1 627 790 296 11 6 chr1 5597090 5597267 -191598165 - ID_B1 SINE B4 -7 217 40 1 627 854 206 8 12 chr1 5597281 5597461 -191597971 - ORR1B1 LTR MaLR -184 175 1 1 627 316 272 23 12 chr1 5597462 5597565 -191597867 - Lx5 LINE L1 -502 6548 6458 1 627 833 190 6 0 chr1 5597573 5597752 -191597680 + CT-rich Low_complexity Low_complexity 1 180 0 1 627 4490 228 52 18 chr1 5597766 5599451 -191595981 - Lx6 LINE L1 -711 6749 4754 1 627 415 199 68 8 chr1 5599455 5599587 -191595845 - Lx6 LINE L1 -2877 3000 2861 1 627 625 111 18 9 chr1 5599587 5599696 -191595736 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 1 627 257 111 0 0 chr1 5599696 5599732 -191595700 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 627 4232 204 11 46 chr1 5599732 5600595 -191594837 - Lx6 LINE L1 -2995 2882 2049 1 627 740 59 10 0 chr1 5600595 5600697 -191594735 + (GA)n Simple_repeat Simple_repeat 1 103 0 1 627 4232 204 11 46 chr1 5600697 5600964 -191594468 - Lx6 LINE L1 -3829 2048 1792 1 627 3469 137 109 40 chr1 5602220 5602925 -191592507 - RMER6A LTR ERVK 0 756 3 1 627 515 306 15 7 chr1 5602932 5603067 -191592365 - B3A SINE B2 -36 162 27 1 627 249 33 0 0 chr1 5603086 5603116 -191592316 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 627 8717 106 27 14 chr1 5603116 5603575 -191591857 - Lx3A LINE L1 -11 6970 6512 1 627 3018 90 2 2 chr1 5603575 5603975 -191591457 - MTB LTR MaLR 0 400 1 1 627 8717 100 44 9 chr1 5603975 5604955 -191590477 - Lx3A LINE L1 -470 6511 5511 1 627 2252 164 35 37 chr1 5605121 5605583 -191589849 - RMER6B LTR ERVK 0 461 1 1 627 977 229 154 30 chr1 5605794 5606206 -191589226 - MT2A LTR ERVL -2 599 1 1 627 459 0 0 0 chr1 5607220 5607271 -191588161 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 627 201 200 44 0 chr1 5607529 5607574 -191587858 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 627 291 114 0 0 chr1 5607579 5607623 -191587809 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 627 1124 114 6 0 chr1 5607695 5607871 -191587561 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 1 627 460 158 13 13 chr1 5608305 5608382 -191587050 + MT2B LTR ERVL 183 259 -342 1 627 7295 131 34 5 chr1 5608385 5609596 -191585836 + ORR1A2-int LTR MaLR 718 1963 0 1 627 1727 127 30 0 chr1 5609596 5609864 -191585568 + ORR1A2 LTR MaLR 1 276 -51 1 627 426 20 0 0 chr1 5610671 5610722 -191584710 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 627 25 0 0 0 chr1 5610796 5610821 -191584611 + AT_rich Low_complexity Low_complexity 1 25 0 1 627 664 265 0 0 chr1 5610829 5610965 -191584467 + B1_Mur1 SINE Alu 3 138 -11 1 627 695 264 62 6 chr1 5610992 5611152 -191584280 + B3 SINE B2 24 192 -24 1 627 582 15 0 0 chr1 5611489 5611556 -191583876 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 627 968 165 94 3 chr1 5611630 5611827 -191583605 + ORR1C2 LTR MaLR 108 378 -6 1 627 541 316 136 11 chr1 5611895 5612337 -191583095 + L1MC3 LINE L1 5587 6083 -1702 1 627 516 336 94 24 chr1 5612520 5612846 -191582586 + L1MC3 LINE L1 6987 7349 -436 1 627 1901 177 59 3 chr1 5612846 5613219 -191582213 + ORR1B1 LTR MaLR 1 394 0 1 627 516 336 94 24 chr1 5613219 5613347 -191582085 + L1MC3 LINE L1 7350 7473 -312 1 627 26 0 0 0 chr1 5613631 5613657 -191581775 + AT_rich Low_complexity Low_complexity 1 26 0 1 627 3162 141 30 17 chr1 5614672 5615184 -191580248 + RMER12B LTR ERVK 7 525 -879 1 627 336 274 0 145 chr1 5615184 5615308 -191580124 - RLTR20B3 LTR ERVK 0 577 472 1 627 390 115 0 0 chr1 5615310 5615371 -191580061 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 627 2109 196 31 24 chr1 5615371 5615827 -191579605 - RLTR20B3 LTR ERVK -95 482 24 1 627 3379 172 44 46 chr1 5615822 5616443 -191578989 + RMER12B LTR ERVK 525 1154 -250 1 627 216 97 0 0 chr1 5616443 5616474 -191578958 + (TATG)n Simple_repeat Simple_repeat 1 31 0 1 627 3379 172 44 46 chr1 5616474 5616575 -191578857 + RMER12B LTR ERVK 1155 1236 -168 1 627 228 67 0 0 chr1 5616575 5616605 -191578827 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 627 3379 214 65 16 chr1 5616605 5616818 -191578614 + RMER12B LTR ERVK 1237 1435 -137 1 627 28 48 0 0 chr1 5616818 5616860 -191578572 + AT_rich Low_complexity Low_complexity 1 42 0 1 627 231 276 84 58 chr1 5616973 5617127 -191578305 + LTR50 LTR ERVL 112 269 -526 1 627 312 304 17 97 chr1 5616991 5617134 -191578298 - MTEb LTR MaLR -126 253 121 1 627 8597 7 0 0 chr1 5617405 5618564 -191576868 - L1Md_T LINE L1 0 6582 5463 1 627 763 132 11 67 chr1 5618618 5618797 -191576635 - Lx LINE L1 -1 6653 6485 1 627 5410 108 28 13 chr1 5618941 5620616 -191574816 - L1VL4 LINE L1 -1816 1743 39 1 627 221 248 6 19 chr1 5620899 5620992 -191574440 + A-rich Low_complexity Low_complexity 1 91 0 1 627 2642 91 13 0 chr1 5621784 5622167 -191573265 - L1_Mus1 LINE L1 -73 5810 5423 1 627 5263 96 8 3 chr1 5622167 5622913 -191572519 + L1_Mus1 LINE L1 5818 6567 0 1 627 1009 133 0 16 chr1 5622983 5623166 -191572266 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 627 1530 17 0 0 chr1 5623166 5623342 -191572090 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 627 332 254 135 35 chr1 5623513 5623795 -191571637 - L1ME2z LINE L1 -43 6401 6092 1 627 522 268 107 24 chr1 5623964 5624132 -191571300 + B3A SINE B2 17 198 0 1 627 245 254 0 17 chr1 5624142 5624202 -191571230 + GA-rich Low_complexity Low_complexity 2 60 0 1 627 682 308 14 22 chr1 5624223 5624487 -191570945 - Lx8 LINE L1 -1072 6624 6352 1 627 31769 87 11 4 chr1 5624664 5630806 -191564626 - L1Md_F2 LINE L1 -2 6580 394 1 627 189 139 0 0 chr1 5630808 5630851 -191564581 + (T)n Simple_repeat Simple_repeat 1 43 0 1 627 22 88 0 0 chr1 5631100 5631157 -191564275 + AT_rich Low_complexity Low_complexity 1 57 0 1 627 4108 82 7 4 chr1 5632657 5633210 -191562222 - L1_Mus1 LINE L1 -1 6566 6012 1 627 371 310 43 0 chr1 5634191 5634307 -191561125 - B1F SINE Alu -5 144 24 1 627 3436 20 5 0 chr1 5634503 5634894 -191560538 - MTA_Mm LTR MaLR -3 393 1 1 78 6210 136 35 3 chr1 5635264 5636367 -191559065 - Lx LINE L1 -1 6653 5519 1 628 10174 109 29 6 chr1 5636371 5638183 -191557249 - L1Md_F2 LINE L1 -411 6171 4282 1 628 24867 79 12 2 chr1 5638307 5639438 -191555994 - L1_Mus1 LINE L1 -1 6566 5459 1 628 2539 110 6 0 chr1 5639438 5639803 -191555629 - L1_Mus1 LINE L1 -1 6566 6200 1 628 24867 134 49 19 chr1 5639803 5644356 -191551076 - L1_Mus1 LINE L1 -425 5458 725 1 628 435 244 16 8 chr1 5644364 5644492 -191550940 - L1_Mus1 LINE L1 -5813 803 675 1 628 4989 152 31 9 chr1 5644614 5645621 -191549811 - L1VL2 LINE L1 -2513 1102 65 1 628 242 201 0 0 chr1 5645984 5646029 -191549403 + L2c LINE L2 3315 3371 -16 1 628 26 0 0 0 chr1 5646405 5646431 -191549001 + AT_rich Low_complexity Low_complexity 1 26 0 1 628 182 220 189 18 chr1 5647615 5647726 -191547706 + L3 LINE CR1 1095 1224 -3265 1 628 288 0 0 0 chr1 5648139 5648171 -191547261 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 1 628 264 313 127 0 chr1 5648752 5648902 -191546530 + L2 LINE L2 2318 2486 -933 1 628 2941 177 31 13 chr1 5649055 5649577 -191545855 - Lx4A LINE L1 0 7058 6528 1 628 324 263 51 38 chr1 5649841 5649999 -191545433 + L1M5 LINE L1 5208 5367 -779 1 628 6818 184 45 24 chr1 5650175 5651172 -191544260 - Lx5 LINE L1 -3 7047 6019 1 628 240 31 31 0 chr1 5651172 5651204 -191544228 - U2 snRNA snRNA -155 33 1 1 628 6818 184 45 24 chr1 5651204 5651929 -191543503 - Lx5 LINE L1 -3 6018 5269 1 628 2068 232 58 22 chr1 5651922 5652473 -191542959 - Lx5 LINE L1 0 7050 6480 1 628 4155 173 35 15 chr1 5652467 5653328 -191542104 - L1_Mur2 LINE L1 -291 5586 4709 1 628 4409 226 50 91 chr1 5653348 5654637 -191540795 - Lx5 LINE L1 -650 6400 5031 1 628 1840 138 32 35 chr1 5654637 5654987 -191540445 + ORR1A2 LTR MaLR 24 359 -15 1 628 9333 168 25 5 chr1 5654991 5656747 -191538685 + ORR1A2-int LTR MaLR 1 1792 0 1 628 2146 135 6 0 chr1 5656747 5657072 -191538360 + ORR1A2 LTR MaLR 1 327 0 1 628 6279 181 172 169 chr1 5657072 5658268 -191537164 - Lx5 LINE L1 -857 5026 3744 1 628 420 20 0 0 chr1 5658268 5658317 -191537115 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 628 6279 181 172 169 chr1 5658317 5658717 -191536715 - Lx5 LINE L1 -2134 3743 3194 1 628 2337 215 28 48 chr1 5658717 5658794 -191536638 - RLTR20B1 LTR ERVK -20 543 468 1 628 330 26 0 0 chr1 5658794 5658833 -191536599 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 628 2337 215 28 48 chr1 5658833 5659254 -191536178 - RLTR20B1 LTR ERVK -96 467 55 1 628 6279 187 164 154 chr1 5659254 5661178 -191534254 - Lx5 LINE L1 -2684 3193 978 1 628 1716 158 15 58 chr1 5662333 5662675 -191532757 - ORR1A2 LTR MaLR 0 327 1 1 628 5325 179 166 8 chr1 5662675 5664202 -191531230 - ORR1A2-int LTR MaLR -19 1944 1 1 628 1793 185 6 0 chr1 5664206 5664520 -191530912 - ORR1A2 LTR MaLR -8 319 4 1 628 364 334 21 25 chr1 5664644 5664808 -191530624 - MIRb SINE MIR -104 164 1 1 628 5963 129 20 13 chr1 5665185 5666834 -191528598 + L1VL4 LINE L1 195 1854 -1705 1 628 2854 19 0 0 chr1 5666835 5667157 -191528275 + RLTRETN_Mm LTR ERVK 1 322 0 1 628 41421 24 5 3 chr1 5667157 5671991 -191523441 + MMETn-int LTR ERVK 1 4844 0 1 628 2803 25 0 0 chr1 5671991 5672313 -191523119 + RLTRETN_Mm LTR ERVK 1 322 0 1 628 19770 154 10 5 chr1 5672316 5676720 -191518712 + L1_Mus3 LINE L1 2208 6632 -6 1 628 2086 79 28 0 chr1 5676735 5677026 -191518406 + L1_Mus4 LINE L1 5684 5982 -654 1 628 234 0 0 0 chr1 5677026 5677052 -191518380 + (CACTC)n Simple_repeat Simple_repeat 2 27 0 1 628 342 129 0 0 chr1 5677238 5677300 -191518132 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 628 366 235 86 0 chr1 5677320 5677401 -191518031 - RSINE1 SINE B4 -45 120 33 1 628 467 298 88 78 chr1 5678198 5678493 -191516939 + LTR55 LTR ERV 1 298 -250 1 628 504 233 13 25 chr1 5678893 5679043 -191516389 - RSINE1 SINE B4 -17 148 1 1 628 205 344 119 35 chr1 5679065 5679291 -191516141 + L2 LINE L2 2286 2530 -889 1 628 204 352 80 43 chr1 5679426 5679613 -191515819 + L2 LINE L2 2757 2950 -469 1 628 22078 93 17 26 chr1 5679727 5683087 -191512345 + L1Md_F2 LINE L1 1913 5243 -640 1 628 14272 73 8 11 chr1 5683089 5685033 -191510399 - L1Md_F2 LINE L1 -611 5272 3335 1 628 2124 44 0 4 chr1 5685034 5685287 -191510145 + L1Md_F2 LINE L1 5335 5586 -297 1 628 7444 74 5 6 chr1 5685288 5686283 -191509149 + L1Md_F2 LINE L1 5588 6581 -1 1 628 424 255 246 52 chr1 5686560 5686792 -191508640 - Lx9 LINE L1 -20 7624 7348 1 628 309 344 31 19 chr1 5687002 5687162 -191508270 - MLT1B LTR MaLR -227 163 2 2 628 254 374 25 31 chr1 5688103 5688266 -191507166 - MIRc SINE MIR -30 238 77 2 628 572 120 0 17 chr1 5689102 5689221 -191506211 + (TCTCTG)n Simple_repeat Simple_repeat 2 118 0 2 628 10072 16 0 0 chr1 5690655 5692096 -191503336 - L1Md_T LINE L1 -403 6179 4739 2 628 3593 42 0 0 chr1 5692096 5692527 -191502905 + L1Md_T LINE L1 6151 6581 -1 2 628 24 32 0 0 chr1 5692594 5692625 -191502807 + AT_rich Low_complexity Low_complexity 1 31 0 2 628 22 35 0 0 chr1 5692977 5693006 -191502426 + AT_rich Low_complexity Low_complexity 1 29 0 2 628 2252 186 44 85 chr1 5694098 5694593 -191500839 + RLTR12B LTR ERVK 1 479 -49 2 628 2293 114 16 156 chr1 5694593 5695093 -191500339 - RLTR23 LTR ERV1 0 430 1 2 628 2252 186 44 85 chr1 5695093 5695148 -191500284 + RLTR12B LTR ERVK 480 528 0 2 628 3673 182 14 16 chr1 5695208 5695918 -191499514 - Lx2B LINE L1 -18 6982 6274 2 628 3056 146 16 18 chr1 5695922 5696194 -191499238 + L1_Mur2 LINE L1 4587 4854 -1023 2 628 779 21 10 0 chr1 5696194 5696291 -191499141 + (GAA)n Simple_repeat Simple_repeat 2 99 0 2 628 3056 146 16 18 chr1 5696291 5696569 -191498863 + L1_Mur2 LINE L1 4855 5134 -743 2 628 2300 224 78 44 chr1 5696567 5696821 -191498611 + Lx9 LINE L1 1174 1430 -4417 2 628 225 0 0 0 chr1 5696821 5696846 -191498586 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 628 2300 223 86 50 chr1 5696846 5696995 -191498437 + Lx9 LINE L1 1431 1601 -4246 2 628 1760 178 83 3 chr1 5696995 5697344 -191498088 + ORR1C1 LTR MaLR 2 378 0 2 628 2300 223 86 50 chr1 5697344 5697872 -191497560 + Lx9 LINE L1 1602 2140 -3707 2 628 15667 110 12 34 chr1 5697868 5700300 -191495132 - L1VL2 LINE L1 -123 3492 1108 2 628 194 0 0 37 chr1 5700300 5700327 -191495105 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 628 15667 92 8 47 chr1 5700327 5700563 -191494869 - L1VL2 LINE L1 -2508 1107 881 2 628 1049 100 0 0 chr1 5700564 5700704 -191494728 - B1_Mus1 SINE Alu -8 140 1 2 628 1191 112 0 0 chr1 5700762 5700941 -191494491 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 628 239 95 0 45 chr1 5700943 5700987 -191494445 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2 628 5882 241 39 78 chr1 5700990 5701141 -191494291 + Lx9 LINE L1 3667 3825 -2022 2 628 338 333 142 0 chr1 5701141 5701324 -191494108 + B3 SINE B2 3 211 -5 2 628 5882 241 39 78 chr1 5701324 5702420 -191493012 + Lx9 LINE L1 3826 4859 -988 2 628 306 0 0 0 chr1 5702420 5702454 -191492978 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 628 5882 241 39 78 chr1 5702454 5703349 -191492083 + Lx9 LINE L1 4860 5721 -126 2 628 3157 49 13 8 chr1 5703349 5703743 -191491689 - MTA_Mm LTR MaLR 0 396 1 2 628 5882 242 45 74 chr1 5703743 5703918 -191491514 + Lx9 LINE L1 5722 5932 -1712 2 628 999 181 107 5 chr1 5703918 5704123 -191491309 - URR1A DNA MER1_type 0 226 1 2 628 1221 243 57 67 chr1 5704123 5704182 -191491250 + Lx9 LINE L1 5933 5989 -1655 2 628 351 252 73 18 chr1 5704368 5704477 -191490955 + Lx9 LINE L1 6307 6421 -1223 2 628 398 348 49 5 chr1 5705242 5705447 -191489985 - MER2 DNA MER2_type -9 336 123 2 628 383 287 128 33 chr1 5707605 5707785 -191487647 - RMER15 LTR ERVL -2 573 377 2 628 6933 140 9 7 chr1 5708341 5709758 -191485674 - Lx LINE L1 -7 6647 5228 2 628 5844 140 39 4 chr1 5709756 5710771 -191484661 + L1_Mm LINE L1 3788 4838 -1045 2 628 23 0 0 0 chr1 5711006 5711029 -191484403 + AT_rich Low_complexity Low_complexity 1 23 0 2 628 23 54 0 0 chr1 5711283 5711320 -191484112 + AT_rich Low_complexity Low_complexity 1 37 0 2 628 207 0 0 0 chr1 5712329 5712352 -191483080 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 628 713 106 69 14 chr1 5712441 5712585 -191482847 + L1_Mus3 LINE L1 6485 6636 -2 2 628 307 361 54 0 chr1 5712794 5712924 -191482508 + B4 SINE B4 68 204 -88 2 628 499 276 45 0 chr1 5712817 5712951 -191482481 + B1F SINE Alu 7 146 -3 2 628 294 73 0 0 chr1 5712952 5712993 -191482439 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2 628 527 298 96 18 chr1 5712994 5713213 -191482219 - Charlie1a DNA MER1_type -365 1090 855 2 628 225 0 0 0 chr1 5713394 5713419 -191482013 + (A)n Simple_repeat Simple_repeat 1 25 0 2 628 307 317 47 53 chr1 5713473 5713623 -191481809 + MLT1A LTR MaLR 226 374 0 2 628 796 303 152 31 chr1 5713769 5714382 -191481050 - Charlie1a DNA MER1_type -697 758 72 2 628 23 0 0 0 chr1 5715192 5715215 -191480217 + AT_rich Low_complexity Low_complexity 1 23 0 2 628 274 222 32 0 chr1 5715693 5715756 -191479676 + CT-rich Low_complexity Low_complexity 3 67 0 2 628 495 340 57 0 chr1 5715758 5715917 -191479515 - B3A SINE B2 -30 168 1 2 628 448 304 66 72 chr1 5716560 5716934 -191478498 + MLT1C LTR MaLR 7 390 0 2 628 801 148 58 5 chr1 5716980 5717185 -191478247 + Lx3B LINE L1 6103 6355 -618 2 628 319 203 68 0 chr1 5717750 5717809 -191477623 + B3 SINE B2 5 67 -149 2 628 404 184 104 45 chr1 5718052 5718206 -191477226 + Lx9 LINE L1 7473 7635 -9 2 628 279 0 0 0 chr1 5718612 5718643 -191476789 + (A)n Simple_repeat Simple_repeat 1 31 0 2 628 387 194 0 0 chr1 5719553 5719625 -191475807 + L1_Mm LINE L1 5066 5137 -746 2 628 5208 91 5 0 chr1 5719624 5720375 -191475057 + L1Md_F2 LINE L1 5534 6287 -295 2 628 1591 84 5 0 chr1 5720383 5720596 -191474836 - L1_Mus1 LINE L1 -79 6488 6275 2 628 296 133 56 7 chr1 5720587 5720674 -191474758 + L1Md_F2 LINE L1 6483 6570 -12 2 628 491 270 54 90 chr1 5721634 5721801 -191473631 - B3A SINE B2 -37 161 1 2 628 384 314 29 0 chr1 5722482 5722584 -191472848 + B1_Mur3 SINE Alu 28 132 -17 2 628 2254 239 31 24 chr1 5722690 5723235 -191472197 - RMER15 LTR ERVL 0 575 27 2 628 1143 239 33 88 chr1 5723445 5723780 -191471652 + MTE2a LTR MaLR 57 362 -17 2 628 3888 39 0 0 chr1 5723790 5724250 -191471182 - L1Md_T LINE L1 -1 6581 6122 2 628 325 332 69 45 chr1 5725645 5725847 -191469585 - MER21B LTR ERV1 -225 638 432 2 628 25 0 0 0 chr1 5726543 5726568 -191468864 + AT_rich Low_complexity Low_complexity 1 25 0 2 628 322 254 0 0 chr1 5726756 5726823 -191468609 + MTD LTR MaLR 42 108 -311 2 628 251 272 150 12 chr1 5727455 5727615 -191467817 - L1MC1 LINE L1 -180 6153 5972 2 628 778 268 35 20 chr1 5728335 5728537 -191466895 + B3 SINE B2 12 216 0 2 628 1144 263 65 11 chr1 5728577 5728854 -191466578 - MTC LTR MaLR 0 421 130 2 628 24616 22 0 0 chr1 5728854 5731876 -191463556 + L1Md_A LINE L1 2566 5586 -297 2 628 8377 38 0 0 chr1 5731877 5732872 -191462560 + L1Md_A LINE L1 5588 6582 0 2 628 4748 138 57 6 chr1 5733480 5734256 -191461176 - Lx2 LINE L1 0 6997 6183 2 628 6681 93 4 32 chr1 5734261 5735588 -191459844 - L1_Mus2 LINE L1 0 6569 5309 2 628 6969 129 19 1 chr1 5735608 5736798 -191458634 - L1_Mus2 LINE L1 -2928 2958 1747 2 628 2315 73 32 0 chr1 5736801 5737117 -191458315 + IAPLTR2b LTR ERVK 2 327 0 2 628 4344 87 15 26 chr1 5737118 5737779 -191457653 + IAPEz-int LTR ERVK 9 662 -5819 2 628 2401 88 9 3 chr1 5737779 5738119 -191457313 + IAPEz-int LTR ERVK 1359 1700 -4781 2 628 6513 36 4 11 chr1 5738114 5738945 -191456487 + IAPEz-int LTR ERVK 5653 6477 -4 2 628 2276 79 28 16 chr1 5738949 5739272 -191456160 + IAPLTR2b LTR ERVK 1 327 0 2 628 3133 146 10 38 chr1 5739272 5740423 -191455009 - L1_Mus2 LINE L1 -4131 1755 558 2 628 548 130 29 110 chr1 5740474 5740647 -191454785 - Lx2 LINE L1 -789 6208 6050 2 628 520 240 160 62 chr1 5741159 5741628 -191453804 + RLTR11B LTR ERVK 1 568 0 2 628 1094 258 44 10 chr1 5742669 5742963 -191452469 - ORR1D1 LTR MaLR -70 304 1 2 628 1921 286 84 63 chr1 5743775 5744502 -191450930 - Lx8 LINE L1 -2 7471 6720 2 628 1960 210 39 10 chr1 5744502 5744911 -191450521 - MTC LTR MaLR 0 421 1 2 628 1921 286 84 63 chr1 5744911 5745073 -191450359 - Lx8 LINE L1 -754 6719 6563 2 628 5786 107 2 4 chr1 5745126 5745968 -191449464 - L1_Mus4 LINE L1 -3 6633 5793 2 628 3032 119 0 0 chr1 5745970 5746465 -191448967 - L1_Mm LINE L1 -1725 4158 3664 2 628 6980 89 8 2 chr1 5746462 5748040 -191447392 + L1_Mus1 LINE L1 4979 6567 0 2 628 3873 169 29 7 chr1 5748049 5748815 -191446617 - L1_Mm LINE L1 -75 5808 5026 2 628 45 62 0 0 chr1 5749398 5749478 -191445954 + AT_rich Low_complexity Low_complexity 1 80 0 2 628 1134 85 0 0 chr1 5749489 5749630 -191445802 + B1_Mus1 SINE Alu 2 142 -6 2 628 360 0 0 0 chr1 5749989 5750029 -191445403 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 628 391 225 0 0 chr1 5751173 5751253 -191444179 + MTB LTR MaLR 1 80 -327 2 628 747 159 56 0 chr1 5751255 5751381 -191444051 + MTB LTR MaLR 190 322 -78 2 628 386 43 0 0 chr1 5751382 5751429 -191444003 + Lx3_Mus LINE L1 5832 5878 -1131 2 628 1861 102 31 0 chr1 5751430 5751723 -191443709 + L1_Mm LINE L1 4055 4356 -1527 2 628 7660 94 7 29 chr1 5751750 5752874 -191442558 + Lx3_Mus LINE L1 5910 7008 -1 2 628 383 198 49 12 chr1 5752889 5752971 -191442461 + MTB LTR MaLR 337 421 0 2 628 1150 233 78 36 chr1 5753076 5753122 -191442310 - MTD LTR MaLR -14 405 363 2 628 1578 188 75 25 chr1 5753122 5753482 -191441950 + ORR1C1 LTR MaLR 1 378 0 2 628 1150 233 78 36 chr1 5753482 5753742 -191441690 - MTD LTR MaLR -57 362 86 2 628 1187 218 20 24 chr1 5753748 5753997 -191441435 + RMER15 LTR ERVL 328 575 0 2 628 333 82 0 0 chr1 5754016 5754065 -191441367 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 628 6897 89 17 1 chr1 5755160 5756829 -191438603 + MusHAL1 LINE L1 11 1706 -1647 2 628 6348 67 8 2 chr1 5756825 5757691 -191437741 - L1Md_F2 LINE L1 0 6582 5712 2 628 3340 87 6 0 chr1 5757688 5758196 -191437236 + MusHAL1 LINE L1 1782 2292 -1061 2 628 2397 209 85 48 chr1 5759633 5759792 -191435640 + RLTR18-int LTR ERVK 4127 4297 -1064 2 628 931 80 7 7 chr1 5759792 5759931 -191435501 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 2 628 2397 209 85 48 chr1 5759931 5759994 -191435438 + RLTR18-int LTR ERVK 4298 4374 -987 2 628 237 33 0 0 chr1 5759994 5760024 -191435408 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 628 2397 209 85 48 chr1 5760024 5760485 -191434947 + RLTR18-int LTR ERVK 4375 4835 -526 2 628 1259 207 14 24 chr1 5760486 5760783 -191434649 + RLTR18-int LTR ERVK 5068 5361 0 2 628 594 270 38 54 chr1 5760783 5760967 -191434465 + RLTR18 LTR ERVK 1 181 -331 2 628 261 338 105 3 chr1 5761030 5761315 -191434117 - L1M2 LINE L1 -3239 2904 2591 2 628 1633 155 163 41 chr1 5761368 5761712 -191433720 - ORR1B1 LTR MaLR -8 386 1 2 628 22 0 0 0 chr1 5762809 5762831 -191432601 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 878 197 30 258 chr1 5762951 5763320 -191432112 + RLTR41 LTR ERV1 42 326 -120 2 628 429 44 0 42 chr1 5763321 5763392 -191432040 + (TCCCC)n Simple_repeat Simple_repeat 5 72 0 2 628 704 219 37 12 chr1 5763392 5763554 -191431878 + RLTR18 LTR ERVK 451 616 0 2 628 550 233 51 17 chr1 5763569 5763687 -191431745 - RLTR41 LTR ERV1 0 446 325 2 628 564 15 0 0 chr1 5763688 5763753 -191431679 + (GGGGA)n Simple_repeat Simple_repeat 3 67 0 2 628 323 309 53 24 chr1 5764507 5764676 -191430756 + L1M2 LINE L1 4487 4660 -1483 2 628 22 0 0 0 chr1 5764677 5764699 -191430733 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 370 296 83 9 chr1 5764743 5764971 -191430461 + L1M2 LINE L1 4701 4968 -1175 2 628 411 78 0 0 chr1 5764984 5765048 -191430384 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 2 628 269 151 19 0 chr1 5765116 5765169 -191430263 - L1_Mm LINE L1 -474 5409 5356 2 628 5482 159 85 26 chr1 5765191 5766719 -191428713 + L1_Mur1 LINE L1 674 2292 -3594 2 78 7736 143 41 18 chr1 5766721 5768227 -191427205 + RMER16-int LTR ERVK 2494 3872 -1534 2 629 836 232 100 80 chr1 5768729 5769090 -191426342 + RLTR9A LTR ERVK 1 368 0 2 629 5352 126 46 28 chr1 5769091 5769990 -191425442 + Lx3C LINE L1 6060 6974 -2 3 629 207 162 0 0 chr1 5770005 5770042 -191425390 + (TATG)n Simple_repeat Simple_repeat 3 39 0 3 629 285 261 26 43 chr1 5770203 5770319 -191425113 - L1_Rod LINE L1 -629 5218 5105 3 629 348 316 86 0 chr1 5770407 5770524 -191424908 + MTE2a LTR MaLR 5 131 -248 3 629 348 342 46 61 chr1 5770555 5770751 -191424681 + MT2A LTR ERVL 127 319 -214 3 629 21 36 0 0 chr1 5771364 5771392 -191424040 + AT_rich Low_complexity Low_complexity 1 28 0 3 629 979 278 42 10 chr1 5772107 5772419 -191423013 - RLTR18-int LTR ERVK -4994 367 46 3 629 498 213 523 73 chr1 5772443 5772663 -191422769 - RLTR18B LTR ERVK 0 512 194 3 629 999 179 120 10 chr1 5772676 5772885 -191422547 - RLTR18B LTR ERVK -278 234 3 3 629 1292 190 4 39 chr1 5772889 5773146 -191422286 - RLTR40 LTR ERVK -569 248 1 3 629 3285 63 23 2 chr1 5773185 5773614 -191421818 + L1Md_F2 LINE L1 6133 6570 -12 3 629 740 280 13 4 chr1 5773622 5773855 -191421577 + L1MB3 LINE L1 5934 6168 -15 3 629 223 319 43 0 chr1 5775046 5775115 -191420317 + ID4 SINE ID 1 72 -11 3 629 227 318 82 27 chr1 5775306 5775416 -191420016 - ID4 SINE ID -27 125 10 3 629 23 33 0 0 chr1 5775726 5775756 -191419676 + AT_rich Low_complexity Low_complexity 1 30 0 3 629 2722 264 118 22 chr1 5775772 5776790 -191418642 - Lx8 LINE L1 -30 7443 6328 3 629 554 204 0 10 chr1 5776821 5776920 -191418512 + B1_Mur1 SINE Alu 52 149 0 3 629 680 207 84 28 chr1 5777413 5777592 -191417840 + MTD LTR MaLR 2 190 -229 3 629 1719 23 9 18 chr1 5778120 5778340 -191417092 + L1Md_F3 LINE L1 6353 6570 -14 3 629 2121 139 84 11 chr1 5778371 5778741 -191416691 - RLTR44A LTR ERVK -4 401 5 3 629 1954 155 0 57 chr1 5778869 5779218 -191416214 + ORR1A4 LTR MaLR 1 329 0 3 629 1087 103 0 0 chr1 5779484 5779630 -191415802 + B1_Mus1 SINE Alu 3 148 0 3 629 219 114 0 0 chr1 5779632 5779667 -191415765 + (A)n Simple_repeat Simple_repeat 1 35 0 3 629 5268 221 57 4 chr1 5780444 5781627 -191413805 - Lx5 LINE L1 0 7050 5806 3 629 2333 224 62 98 chr1 5781628 5782288 -191413144 + RLTR26 LTR ERVK 2 637 -5 3 629 2571 191 14 4 chr1 5782301 5782862 -191412570 - Lx5 LINE L1 -401 5476 4910 3 629 31 58 0 0 chr1 5783092 5783144 -191412288 + AT_rich Low_complexity Low_complexity 1 52 0 3 629 1644 179 16 33 chr1 5783224 5783530 -191411902 + RLTR12A LTR ERVK 6 306 -262 3 629 399 212 90 0 chr1 5783722 5783819 -191411613 + PB1D10 SINE Alu 6 111 -6 3 629 356 318 81 13 chr1 5783951 5784160 -191411272 + L1M2 LINE L1 4783 5023 -1117 3 629 834 313 4 4 chr1 5784449 5784683 -191410749 - RMER1C Other Other -434 908 675 3 629 533 250 52 13 chr1 5785194 5785348 -191410084 - RMER1C Other Other -1046 296 137 3 629 319 235 49 0 chr1 5785360 5785441 -191409991 + RMER1C Other Other 940 1024 -318 3 629 3321 127 75 20 chr1 5785445 5785992 -191409440 + Lx LINE L1 6074 6650 -4 3 629 256 192 38 19 chr1 5786090 5786143 -191409289 + RLTR17 LTR ERVK 552 605 -87 3 629 231 36 0 0 chr1 5786161 5786189 -191409243 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 629 2215 80 0 0 chr1 5786330 5786631 -191408801 + L1_Mus1 LINE L1 5925 6225 -342 3 629 1245 81 6 0 chr1 5786631 5786803 -191408629 + L1_Mus1 LINE L1 6395 6567 0 3 629 1653 206 42 33 chr1 5786804 5787509 -191407923 + RMER3D-int LTR ERVK 132 1367 -1475 3 629 243 0 0 0 chr1 5787511 5787538 -191407894 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 629 5179 199 57 48 chr1 5787646 5789094 -191406338 + RMER3D-int LTR ERVK 1382 2841 -1 3 629 1157 222 11 47 chr1 5789102 5789376 -191406056 + RLTR17 LTR ERVK 105 368 -324 3 629 354 159 0 0 chr1 5789388 5789457 -191405975 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 629 368 190 59 14 chr1 5789527 5789623 -191405809 - Lx7 LINE L1 -1901 5795 5672 3 629 819 263 90 26 chr1 5789624 5790003 -191405429 + Lx7 LINE L1 5789 6191 -1505 3 629 37 39 0 0 chr1 5790167 5790218 -191405214 + AT_rich Low_complexity Low_complexity 1 51 0 3 629 4894 157 37 15 chr1 5790251 5791834 -191403598 + L1Md_F LINE L1 280 1898 -1919 3 629 280 242 40 59 chr1 5791836 5791851 -191403581 + RLTR25B LTR ERVK 424 521 -506 3 629 605 71 0 0 chr1 5791851 5791936 -191403496 + B1_Mm SINE Alu 41 125 -22 3 629 7144 72 4 4 chr1 5791941 5792921 -191402511 + L1_Mus2 LINE L1 5587 6566 0 3 629 322 364 97 15 chr1 5793758 5793892 -191401540 + B1F1 SINE Alu 3 147 -2 3 629 615 121 0 52 chr1 5794316 5794433 -191400999 - L1_Mur2 LINE L1 -715 5162 5054 3 629 2972 18 3 0 chr1 5794433 5794769 -191400663 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 629 52589 25 15 7 chr1 5794778 5801191 -191394241 - IAPEz-int LTR ERVK -9 6472 8 3 629 2959 21 3 0 chr1 5801191 5801527 -191393905 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 629 13310 115 26 7 chr1 5801531 5803831 -191391601 - L1_Mur2 LINE L1 -831 5046 2703 3 629 464 137 0 0 chr1 5803834 5803929 -191391503 - L1_Mur2 LINE L1 -2737 3140 3046 3 629 342 0 0 0 chr1 5803929 5803967 -191391465 + (TTC)n Simple_repeat Simple_repeat 1 38 0 3 629 466 195 8 0 chr1 5803973 5804096 -191391336 - L1_Mur2 LINE L1 -2785 3092 2969 3 629 359 343 131 39 chr1 5804189 5804395 -191391037 + B4A SINE B4 2 226 -66 3 629 757 220 94 15 chr1 5804658 5804872 -191390560 - MTD LTR MaLR -171 229 1 3 629 198 71 0 0 chr1 5805763 5805791 -191389641 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 629 1472 209 48 74 chr1 5806307 5806700 -191388732 + ORR1C2 LTR MaLR 2 384 0 3 629 2677 170 93 153 chr1 5806771 5807639 -191387793 - RLTR13D6 LTR ERVK -86 816 1 3 629 24 77 0 0 chr1 5807660 5807712 -191387720 + AT_rich Low_complexity Low_complexity 1 52 0 3 629 402 282 84 28 chr1 5808237 5808416 -191387016 + L1MB8 LINE L1 4981 5169 -977 3 629 357 289 117 69 chr1 5808508 5809430 -191386002 + L1MB8 LINE L1 5175 6159 -19 3 629 304 262 16 0 chr1 5809518 5809579 -191385853 + ID_B1 SINE B4 156 217 -7 3 629 198 0 0 0 chr1 5809601 5809623 -191385809 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 629 239 273 0 54 chr1 5809633 5809648 -191385784 + polypurine Low_complexity Low_complexity 4 16 0 3 629 1521 196 174 3 chr1 5809648 5809981 -191385451 + ORR1B1 LTR MaLR 5 394 0 3 629 239 273 0 54 chr1 5809981 5810058 -191385374 + GA-rich Low_complexity Low_complexity 17 91 0 3 629 36232 16 0 7 chr1 5810074 5815679 -191379753 + L1Md_A LINE L1 25 5586 -297 3 629 8881 12 0 0 chr1 5815679 5816675 -191378757 + L1Md_A LINE L1 5587 6582 0 3 629 271 167 3 20 chr1 5816746 5816805 -191378627 + B1F SINE Alu 61 148 -1 3 629 357 337 72 18 chr1 5816979 5817145 -191378287 + MER44B DNA MER2_type 66 240 -310 3 629 210 337 0 0 chr1 5817410 5817493 -191377939 - B3 SINE B2 -129 87 5 3 629 30 59 0 0 chr1 5817581 5817632 -191377800 + AT_rich Low_complexity Low_complexity 1 51 0 3 629 2830 21 0 24 chr1 5818024 5818359 -191377073 + IAPLTR2b LTR ERVK 1 327 0 3 629 579 299 60 24 chr1 5818565 5818815 -191376617 - MER2 DNA MER2_type 0 345 87 3 629 704 311 113 81 chr1 5820054 5820534 -191374898 + MLT1E1A LTR MaLR 182 656 -24 3 629 335 278 48 0 chr1 5820543 5820669 -191374763 - L1MC4a LINE L1 -577 7305 7174 3 629 344 242 15 0 chr1 5820939 5821005 -191374427 + ORR1E LTR MaLR 1 67 -292 3 629 776 265 198 31 chr1 5821019 5821377 -191374055 + MTD LTR MaLR 2 419 0 3 629 626 269 96 0 chr1 5821380 5821547 -191373885 + ORR1E LTR MaLR 82 264 -95 3 629 578 53 42 0 chr1 5821640 5821735 -191373697 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 3 629 22 0 0 0 chr1 5821877 5821899 -191373533 + AT_rich Low_complexity Low_complexity 1 22 0 3 629 319 278 25 0 chr1 5822188 5822281 -191373151 + ID4 SINE ID 8 102 -50 3 629 5721 245 86 37 chr1 5822467 5823144 -191372288 - Lx6 LINE L1 -5 7455 6738 3 629 252 0 0 0 chr1 5823144 5823172 -191372260 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 629 12743 199 48 33 chr1 5823172 5827090 -191368342 - Lx6 LINE L1 -723 6737 2793 3 629 31000 93 12 6 chr1 5827108 5833080 -191362352 - L1Md_F2 LINE L1 -12 6570 570 3 629 5030 195 48 100 chr1 5833081 5833674 -191361758 - Lx6 LINE L1 -3085 2795 2304 3 629 1043 99 0 0 chr1 5833674 5833816 -191361616 - B1_Mus2 SINE Alu -5 142 1 3 629 5030 195 48 100 chr1 5833816 5834641 -191360791 - Lx6 LINE L1 -3577 2303 1451 3 629 450 0 0 0 chr1 5834663 5834713 -191360719 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 629 2284 303 43 16 chr1 5834714 5835505 -191359927 - Lx6 LINE L1 -6861 867 56 3 629 3101 41 10 3 chr1 5835743 5836130 -191359302 + L1Md_F3 LINE L1 6181 6570 -14 3 629 267 217 148 16 chr1 5836393 5836454 -191358978 + ID_B1 SINE B4 94 162 -62 3 629 594 323 16 31 chr1 5837217 5837409 -191358023 - MTE-int LTR MaLR -662 918 730 3 629 425 226 52 9 chr1 5837530 5837646 -191357786 + L1MA7 LINE L1 6027 6147 -144 3 629 445 270 2 0 chr1 5837799 5837934 -191357498 + Lx9 LINE L1 6671 6940 -704 3 629 1005 178 122 23 chr1 5837958 5838251 -191357181 + ORR1B2 LTR MaLR 3 362 -12 3 629 805 283 105 35 chr1 5838251 5838595 -191356837 + Lx9 LINE L1 6979 7346 -298 3 629 25 0 0 0 chr1 5838825 5838850 -191356582 + AT_rich Low_complexity Low_complexity 1 25 0 3 629 1192 286 130 28 chr1 5838898 5839466 -191355966 - Lx8 LINE L1 -5 7468 6843 3 629 21 0 0 0 chr1 5839483 5839504 -191355928 + AT_rich Low_complexity Low_complexity 1 21 0 3 629 504 324 33 6 chr1 5839796 5839976 -191355456 - MER89 LTR ERV1 -53 506 322 3 629 31178 98 12 8 chr1 5840036 5845387 -191350045 + L1Md_F2 LINE L1 212 5586 -297 3 629 7739 58 6 6 chr1 5845388 5846383 -191349049 + L1Md_F2 LINE L1 5588 6582 0 3 629 2063 256 48 49 chr1 5846613 5847367 -191348065 + RMER13A LTR ERVK 3 721 -139 3 629 901 336 41 34 chr1 5847359 5847772 -191347660 - MER34A LTR ERV1 -149 422 7 3 629 30 27 0 0 chr1 5848211 5848248 -191347184 + AT_rich Low_complexity Low_complexity 1 37 0 3 629 361 202 0 0 chr1 5848274 5848353 -191347079 + Lx8 LINE L1 7395 7473 0 3 629 1118 83 0 0 chr1 5849750 5849895 -191345537 + B1_Mus2 SINE Alu 1 145 -2 3 629 1050 118 0 0 chr1 5849895 5850056 -191345376 + (GAA)n Simple_repeat Simple_repeat 2 162 0 3 629 816 230 21 50 chr1 5850330 5850656 -191344776 - ORR1D1 LTR MaLR 0 374 1 3 629 426 269 359 16 chr1 5850925 5851224 -191344208 + MLT1A1 LTR MaLR 3 404 -4 3 629 6322 65 0 6 chr1 5851896 5852713 -191342719 + L1Md_F2 LINE L1 4775 5586 -297 4 629 7942 45 5 3 chr1 5852713 5853695 -191341737 + L1Md_F2 LINE L1 5587 6570 -12 4 629 186 43 0 0 chr1 5854443 5854466 -191340966 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 629 186 372 150 28 chr1 5854546 5854800 -191340632 + L2a LINE L2 2656 2940 -479 4 629 186 370 27 0 chr1 5855031 5855104 -191340328 + L2a LINE L2 3337 3411 -15 4 629 27 0 0 0 chr1 5855663 5855690 -191339742 + AT_rich Low_complexity Low_complexity 1 27 0 4 629 417 116 0 0 chr1 5856146 5856215 -191339217 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 629 274 209 14 29 chr1 5856949 5857018 -191338414 + GA-rich Low_complexity Low_complexity 4 71 0 4 629 683 211 37 79 chr1 5857220 5857410 -191338022 + B3A SINE B2 1 182 -16 4 629 432 0 0 0 chr1 5858092 5858140 -191337292 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 629 451 306 42 103 chr1 5858405 5858736 -191336696 + MTEb LTR MaLR 69 379 0 4 629 1538 182 61 10 chr1 5858791 5859102 -191336330 - ORR1A4 LTR MaLR -2 327 1 4 629 1074 72 39 83 chr1 5859102 5859216 -191336216 - ORR1A4-int LTR MaLR 0 1963 1854 4 629 1091 138 0 46 chr1 5859216 5859413 -191336019 + B2_Mm2 SINE B2 2 189 -6 4 629 1074 72 39 83 chr1 5859413 5859479 -191335953 - ORR1A4-int LTR MaLR -110 1853 1791 4 629 33515 86 1 1 chr1 5859481 5865333 -191330099 - L1_Mus1 LINE L1 -521 6046 189 4 629 358 98 0 0 chr1 5865333 5865384 -191330048 - MusHAL1 LINE L1 -2352 360 310 4 629 3264 169 2 2 chr1 5865381 5865978 -191329454 - L1Md_A LINE L1 -5383 1341 745 4 629 7054 186 35 111 chr1 5865979 5867759 -191327673 - ORR1A4-int LTR MaLR -306 1657 14 4 629 1899 167 0 10 chr1 5867765 5868079 -191327353 - ORR1A4 LTR MaLR 0 329 19 4 629 396 0 0 0 chr1 5868079 5868123 -191327309 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 4 629 2783 54 11 0 chr1 5869152 5869504 -191325928 + RLTR13D5 LTR ERVK 1 356 -667 4 629 3031 107 18 11 chr1 5869498 5869952 -191325480 + RLTR13D5 LTR ERVK 567 1023 0 4 629 242 385 88 15 chr1 5870064 5870201 -191325231 - L2 LINE L2 -791 2628 2482 4 629 229 202 63 0 chr1 5870239 5870318 -191325114 + L1MC LINE L1 3929 4012 -2134 4 629 1022 276 121 9 chr1 5870540 5870855 -191324577 - ORR1E LTR MaLR -6 353 4 4 629 23 68 0 0 chr1 5870980 5871024 -191324408 + AT_rich Low_complexity Low_complexity 1 44 0 4 629 4300 130 75 11 chr1 5871024 5871749 -191323683 - Lx3B LINE L1 -3 6970 6200 4 629 1389 125 105 0 chr1 5871753 5872001 -191323431 + L1_Mur1 LINE L1 4654 4927 -959 4 629 256 299 0 0 chr1 5872302 5872369 -191323063 - B4A SINE B4 -223 69 3 4 629 243 286 0 0 chr1 5872401 5872481 -191322951 - L1P5 LINE L1 -374 5926 5847 4 629 21 36 0 0 chr1 5872516 5872544 -191322888 + AT_rich Low_complexity Low_complexity 1 28 0 4 629 7501 144 47 11 chr1 5872544 5873811 -191321621 - Lx2 LINE L1 -1 6996 5685 4 629 5942 173 8 28 chr1 5873810 5874974 -191320458 + Lx2 LINE L1 4534 5674 -203 4 629 920 254 15 0 chr1 5874974 5875175 -191320257 - B3 SINE B2 -5 211 8 4 629 800 289 120 18 chr1 5875213 5875846 -191319586 - L1M2 LINE L1 -326 5554 4853 4 629 609 14 0 0 chr1 5876017 5876087 -191319345 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 629 1714 301 74 23 chr1 5876126 5876773 -191318659 - Lx9 LINE L1 -309 7335 6656 4 629 465 299 115 42 chr1 5876777 5876969 -191318463 - MLT2B1 LTR ERVL -307 213 8 4 629 1022 302 37 21 chr1 5877429 5877754 -191317678 + Lx9 LINE L1 6656 6985 -659 4 629 443 231 66 28 chr1 5877824 5878003 -191317429 + L1M4 LINE L1 5269 5462 -722 4 629 295 263 92 34 chr1 5878019 5878211 -191317221 + L1M4 LINE L1 5533 5748 -430 4 629 5122 171 49 5 chr1 5879077 5879837 -191315595 + L1VL2 LINE L1 64 859 -5476 4 629 297 0 0 0 chr1 5879837 5879870 -191315562 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 629 7742 103 26 13 chr1 5879870 5881161 -191314271 + L1VL2 LINE L1 860 2172 -1443 4 629 21 0 0 0 chr1 5881340 5881361 -191314071 + AT_rich Low_complexity Low_complexity 1 21 0 4 629 4844 145 47 5 chr1 5881403 5882278 -191313154 - L1_Mur2 LINE L1 -971 4906 3995 4 629 1119 95 0 0 chr1 5883114 5883262 -191312170 + B1_Mus1 SINE Alu 1 148 0 4 629 322 250 13 0 chr1 5883531 5883607 -191311825 - RLTR24 LTR ERV1 -452 77 1 4 629 680 334 18 54 chr1 5883634 5883685 -191311747 + RLTR18B LTR ERVK 190 231 -281 4 629 3235 40 42 0 chr1 5883685 5884086 -191311346 - L1Md_F3 LINE L1 -2 6582 6165 4 629 680 334 18 54 chr1 5884086 5884369 -191311063 + RLTR18B LTR ERVK 232 512 0 4 629 1227 228 81 68 chr1 5885839 5886348 -191309084 + MT2B LTR ERVL 1 559 -42 4 629 252 0 0 0 chr1 5886348 5886376 -191309056 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 4 629 351 0 0 0 chr1 5886376 5886414 -191309018 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 629 216 196 0 0 chr1 5886703 5886749 -191308683 + A-rich Low_complexity Low_complexity 5 50 0 4 629 1056 65 65 0 chr1 5886893 5887031 -191308401 - B1_Mus2 SINE Alu 0 147 1 4 629 621 296 48 18 chr1 5887246 5887582 -191307850 - L1MA4 LINE L1 -289 6011 5664 4 629 830 60 22 7 chr1 5887669 5887804 -191307628 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 4 629 298 217 188 77 chr1 5887816 5887863 -191307569 - MT2B LTR ERVL 0 601 549 4 629 405 0 0 0 chr1 5887863 5887908 -191307524 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 629 298 217 188 77 chr1 5887908 5888030 -191307402 - MT2B LTR ERVL -53 548 413 4 629 1054 241 56 25 chr1 5888118 5888655 -191306777 - L1MA4 LINE L1 -632 5532 4974 4 629 26 30 0 0 chr1 5888681 5888714 -191306718 + AT_rich Low_complexity Low_complexity 1 33 0 4 629 618 304 25 0 chr1 5888921 5889079 -191306353 + B3A SINE B2 1 162 -36 4 629 3416 217 69 64 chr1 5889107 5890007 -191305425 - RMER13B LTR ERVK 0 908 5 4 629 441 54 0 0 chr1 5890014 5890070 -191305362 + (CATA)n Simple_repeat Simple_repeat 1 56 0 4 629 307 381 76 34 chr1 5890328 5890552 -191304880 - MLT1A0 LTR MaLR -29 336 103 4 629 671 314 70 51 chr1 5890552 5890867 -191304565 - ORR1E LTR MaLR 0 359 39 4 629 618 276 57 57 chr1 5891113 5891305 -191304127 + B3A SINE B2 25 216 0 4 629 180 386 52 9 chr1 5891478 5891593 -191303839 - L2a LINE L2 -27 3399 3280 4 629 286 289 0 0 chr1 5891883 5891959 -191303473 + Lx8 LINE L1 7172 7247 -226 4 629 772 255 44 69 chr1 5891959 5892406 -191303026 + RLTR20D LTR ERVK 1 551 0 4 629 284 258 32 0 chr1 5892707 5892769 -191302663 + RSINE1 SINE B4 78 141 -24 4 629 279 0 0 0 chr1 5892769 5892800 -191302632 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 629 1123 324 132 10 chr1 5892912 5893585 -191301847 + Lx8 LINE L1 6566 7320 -153 4 629 22 56 0 0 chr1 5893695 5893731 -191301701 + AT_rich Low_complexity Low_complexity 1 36 0 4 629 509 303 109 27 chr1 5893762 5893945 -191301487 - B3A SINE B2 0 198 1 4 629 1159 220 37 10 chr1 5894311 5894423 -191301009 - RMER1C Other Other 0 1342 1228 4 629 363 78 0 0 chr1 5894423 5894474 -191300958 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 629 1159 220 37 10 chr1 5894474 5894660 -191300772 - RMER1C Other Other -115 1227 1036 4 629 2130 70 17 0 chr1 5894702 5894989 -191300443 + L1_Mus1 LINE L1 6264 6555 -12 4 629 186 133 0 0 chr1 5895012 5895042 -191300390 + (A)n Simple_repeat Simple_repeat 1 30 0 4 629 31 76 0 0 chr1 5895586 5895652 -191299780 + AT_rich Low_complexity Low_complexity 1 66 0 4 629 232 283 49 29 chr1 5895893 5895995 -191299437 + L1ME1 LINE L1 6031 6134 -45 4 629 577 318 187 19 chr1 5896904 5897263 -191298169 + MER44D DNA MER2_type 77 495 -210 4 629 426 258 83 30 chr1 5897413 5897545 -191297887 + B1F1 SINE Alu 6 144 -5 4 629 477 0 0 0 chr1 5897839 5897892 -191297540 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 629 228 161 48 0 chr1 5897892 5897954 -191297478 + GA-rich Low_complexity Low_complexity 4 68 0 4 630 1003 282 62 17 chr1 5898473 5898826 -191296606 + ORR1D2 LTR MaLR 1 369 -1 4 630 22 35 0 0 chr1 5899731 5899760 -191295672 + AT_rich Low_complexity Low_complexity 1 29 0 4 630 189 333 84 21 chr1 5900195 5900290 -191295142 - L3 LINE CR1 -2732 1757 1657 4 630 6653 149 13 2 chr1 5901138 5902244 -191293188 + Lx2 LINE L1 5876 6993 -4 4 630 3348 161 39 25 chr1 5902610 5903296 -191292136 + Lx2B LINE L1 5950 6645 -355 4 630 266 305 0 9 chr1 5903282 5903388 -191292044 + Lx2B LINE L1 6896 7000 0 4 630 28 0 0 0 chr1 5904059 5904087 -191291345 + AT_rich Low_complexity Low_complexity 1 28 0 4 630 337 25 101 0 chr1 5905757 5905836 -191289596 + (CCA)n Simple_repeat Simple_repeat 3 89 0 4 630 315 0 0 0 chr1 5905848 5905883 -191289549 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 630 24 85 0 0 chr1 5908290 5908349 -191287083 + AT_rich Low_complexity Low_complexity 1 59 0 4 630 230 275 0 58 chr1 5908418 5908557 -191286875 + A-rich Low_complexity Low_complexity 1 131 0 4 630 255 311 37 9 chr1 5908573 5908680 -191286752 - Lx7 LINE L1 -400 7296 7187 4 630 591 291 77 0 chr1 5908748 5908944 -191286488 - Lx6 LINE L1 -169 7291 7081 4 630 281 127 0 35 chr1 5909026 5909083 -191286349 + CT-rich Low_complexity Low_complexity 5 59 0 4 630 3809 216 44 22 chr1 5909106 5910051 -191285381 - Lx6 LINE L1 -672 6788 5823 4 630 913 171 18 0 chr1 5910054 5910218 -191285214 - B2_Mm2 SINE B2 -2 193 27 4 630 7837 88 17 6 chr1 5910218 5912325 -191283107 - L1Md_F2 LINE L1 -1 6581 5015 4 630 266 0 0 29 chr1 5912325 5912360 -191283072 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 630 6240 179 52 13 chr1 5912360 5913148 -191282284 - L1Md_F2 LINE L1 -635 5245 4426 4 630 3657 160 33 11 chr1 5913178 5913816 -191281616 - Lx4A LINE L1 -3 7055 6404 4 630 14836 130 67 4 chr1 5913820 5916791 -191278641 - Lx4A LINE L1 -909 6149 2965 4 630 3717 133 58 15 chr1 5916802 5917719 -191277713 - Lx4A LINE L1 -4317 1560 605 4 630 252 172 0 158 chr1 5917775 5917851 -191277581 - Lx4A LINE L1 -6626 460 397 4 630 5820 170 74 48 chr1 5917862 5917923 -191277509 - L1Md_F2 LINE L1 -1454 4426 4354 4 630 6222 152 16 20 chr1 5917923 5919018 -191276414 - Lx2 LINE L1 0 6997 5907 4 630 5820 170 74 48 chr1 5919018 5920304 -191275128 - L1Md_F2 LINE L1 -1527 4353 3050 4 630 216 0 0 0 chr1 5920304 5920328 -191275104 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 630 5820 170 74 48 chr1 5920328 5920514 -191274918 - L1Md_F2 LINE L1 -2831 3049 2854 4 630 11329 159 16 12 chr1 5920552 5923855 -191271577 - Lx2 LINE L1 -1 6996 3689 4 630 2786 61 0 9 chr1 5923855 5924201 -191271231 - IAPLTR4 LTR ERVK 0 345 3 4 630 11329 181 20 18 chr1 5924201 5924444 -191270988 - Lx2 LINE L1 -2189 3688 3440 4 630 977 47 8 0 chr1 5924446 5924573 -191270859 + (TTTCC)n Simple_repeat Simple_repeat 3 130 0 4 630 4750 107 23 4 chr1 5924576 5925269 -191270163 - L1_Mus4 LINE L1 -12 6624 5919 4 630 4031 105 2 0 chr1 5925272 5925889 -191269543 + MusHAL1 LINE L1 919 1536 -1176 4 630 1810 171 9 6 chr1 5925889 5926213 -191269219 - RLTR31A_Mm LTR ERVK -259 325 1 4 630 2818 187 28 14 chr1 5926213 5926777 -191268655 - L1VL4 LINE L1 -5536 766 195 5 630 766 208 79 35 chr1 5926778 5927007 -191268425 - Lx2 LINE L1 -3022 2858 2620 4 630 4322 191 56 34 chr1 5927005 5928192 -191267240 - Lx2 LINE L1 -3497 2383 1167 4 630 2318 71 0 21 chr1 5928192 5928522 -191266910 - L1Md_F2 LINE L1 -10 6572 6250 5 630 3479 235 64 59 chr1 5928522 5929580 -191265852 - Lx2 LINE L1 -6562 1166 87 4 630 481 343 108 63 chr1 5930706 5930799 -191264633 + MLT-int LTR MaLR 1169 1268 -467 5 630 440 274 51 15 chr1 5930799 5930936 -191264496 + B1F1 SINE Alu 1 142 -7 5 630 481 343 108 63 chr1 5930936 5931126 -191264306 + MLT-int LTR MaLR 1269 1465 -270 5 630 1986 188 206 29 chr1 5931126 5931605 -191263827 + RMER2 LTR ERV1 1 564 -3 5 630 213 39 0 0 chr1 5931787 5931813 -191263619 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 630 788 179 18 0 chr1 5931815 5931983 -191263449 + GA-rich Low_complexity Low_complexity 4 174 0 5 630 626 149 17 9 chr1 5931993 5932108 -191263324 + B1_Mur4 SINE Alu 35 150 0 5 630 473 330 36 7 chr1 5932221 5932529 -191262903 + L1MC2 LINE L1 1587 1903 -4605 5 630 4691 79 3 11 chr1 5932560 5933202 -191262230 + L1_Mus1 LINE L1 5929 6565 -2 5 630 21 71 0 0 chr1 5933216 5933258 -191262174 + AT_rich Low_complexity Low_complexity 1 42 0 5 630 419 167 125 0 chr1 5933412 5933484 -191261948 + B2_Mm2 SINE B2 2 82 -113 5 630 217 296 118 39 chr1 5933484 5933514 -191261918 + B4A SINE B4 2 111 -181 5 630 841 256 89 87 chr1 5933544 5934015 -191261417 + RMER3D-int LTR ERVK 2 473 -2369 5 630 3062 202 78 43 chr1 5934082 5935336 -191260096 + RMER3D-int LTR ERVK 1546 2842 0 5 630 1357 185 3 59 chr1 5935359 5935646 -191259786 + RLTR17 LTR ERVK 98 368 -324 5 630 275 65 22 0 chr1 5935647 5935693 -191259739 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 630 217 400 13 0 chr1 5935736 5935811 -191259621 + PB1D10 SINE Alu 5 80 -37 5 630 225 250 0 0 chr1 5935810 5935854 -191259578 - PB1D7 SINE Alu -6 114 71 5 630 388 265 87 77 chr1 5935868 5936064 -191259368 + L1MC2 LINE L1 5341 5538 -783 5 630 307 299 97 46 chr1 5936119 5936357 -191259075 + L1MC2 LINE L1 5636 5885 -623 5 630 568 298 106 9 chr1 5936369 5936793 -191258639 + L1MC2 LINE L1 5925 6389 -130 5 630 351 0 0 0 chr1 5936875 5936914 -191258518 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 630 6194 113 46 20 chr1 5936957 5938081 -191257351 - Lx LINE L1 -6 6648 5496 5 630 4683 99 3 10 chr1 5938110 5938833 -191256599 + L1_Mus4 LINE L1 5962 6636 0 5 630 263 100 25 0 chr1 5938859 5938899 -191256533 - RSINE1 SINE B4 -114 51 11 5 630 354 274 61 17 chr1 5941401 5941516 -191253916 + B2_Mm2 SINE B2 70 189 -6 5 630 367 360 97 100 chr1 5941858 5942207 -191253225 - MLT1F2 LTR MaLR -86 474 127 5 630 621 279 108 88 chr1 5942307 5942649 -191252783 + ORR1E LTR MaLR 6 354 -5 5 630 432 118 0 0 chr1 5943061 5943129 -191252303 + (TCC)n Simple_repeat Simple_repeat 2 69 0 5 630 361 268 62 14 chr1 5943165 5943309 -191252123 - Ricksha_c DNA MuDR -1532 516 366 5 630 781 279 74 33 chr1 5943330 5943693 -191251739 + MTEa LTR MaLR 1 378 -1 5 630 28 0 0 0 chr1 5944322 5944350 -191251082 + AT_rich Low_complexity Low_complexity 1 28 0 5 630 474 146 0 0 chr1 5947893 5947975 -191247457 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 630 549 267 7 15 chr1 5948196 5948333 -191247099 + B1_Mur2 SINE Alu 4 139 -10 5 630 215 152 22 0 chr1 5948339 5948385 -191247047 + GA-rich Low_complexity Low_complexity 3 49 0 5 630 4432 82 42 2 chr1 5949367 5949986 -191245446 - L1_Mus3 LINE L1 -7 6631 5988 5 630 1595 239 168 3 chr1 5950091 5950801 -191244631 + L1_Mur3 LINE L1 298 1125 -6603 5 630 7778 179 65 54 chr1 5950826 5951060 -191244372 + L1_Mur3 LINE L1 1184 1428 -4449 5 630 1028 129 6 0 chr1 5951060 5951230 -191244202 + (GAGAA)n Simple_repeat Simple_repeat 4 174 0 5 630 7778 236 75 150 chr1 5951230 5952053 -191243379 + L1_Mur3 LINE L1 1429 2438 -3439 5 630 3180 162 101 43 chr1 5952053 5952705 -191242727 + RLTR17 LTR ERVK 1 690 -2 5 630 7778 236 75 150 chr1 5952705 5952731 -191242701 + L1_Mur3 LINE L1 2439 2454 -3423 5 630 904 57 6 43 chr1 5952731 5952895 -191242537 + (GGGA)n Simple_repeat Simple_repeat 4 161 0 5 630 645 14 0 0 chr1 5952895 5952968 -191242464 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 5 630 7778 236 75 150 chr1 5952968 5953297 -191242135 + L1_Mur3 LINE L1 2455 2757 -3120 5 630 2192 230 49 29 chr1 5953297 5953346 -191242086 + RMER19C LTR ERVK 88 148 -463 5 630 360 0 0 0 chr1 5953346 5953386 -191242046 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 630 2192 230 49 29 chr1 5953386 5953850 -191241582 + RMER19C LTR ERVK 149 611 0 5 630 10890 219 67 120 chr1 5953850 5954028 -191241404 + L1_Mur3 LINE L1 2758 2958 -2922 5 630 4619 66 0 15 chr1 5954028 5954631 -191240801 + L1Md_F2 LINE L1 5970 6563 -19 5 630 10890 175 46 43 chr1 5954631 5954700 -191240732 + L1_Mur3 LINE L1 2959 3002 -2878 5 630 207 0 0 0 chr1 5954700 5954723 -191240709 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 630 10890 175 46 43 chr1 5954723 5957167 -191238265 + L1_Mur3 LINE L1 3003 5470 -410 5 630 12613 97 10 0 chr1 5957211 5959808 -191235624 - L1_Mus2 LINE L1 0 6566 3944 5 630 4309 126 55 30 chr1 5959847 5960627 -191234805 - Lx LINE L1 -25 6629 5830 5 630 667 238 119 5 chr1 5961007 5961201 -191234231 - B3 SINE B2 0 216 1 5 630 229 0 54 27 chr1 5961252 5961289 -191234143 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 630 630 227 8 0 chr1 5961291 5961410 -191234022 - B1_Mus1 SINE Alu -15 133 14 5 630 291 222 9 132 chr1 5961311 5961425 -191234007 - MT2B LTR ERVL -337 264 165 5 630 857 227 41 9 chr1 5961433 5961651 -191233781 + Lx7 LINE L1 7471 7695 -1 5 630 23 33 0 0 chr1 5961653 5961683 -191233749 + AT_rich Low_complexity Low_complexity 1 30 0 5 630 253 365 9 0 chr1 5962498 5962613 -191232819 + Lx8 LINE L1 7001 7116 -357 5 630 236 137 19 19 chr1 5963382 5963434 -191231998 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 5 630 23 0 0 0 chr1 5964376 5964399 -191231033 + AT_rich Low_complexity Low_complexity 1 23 0 5 630 1099 121 29 0 chr1 5964404 5964577 -191230855 + B2_Mm1t SINE B2 2 179 -14 5 630 180 0 0 0 chr1 5964631 5964651 -191230781 + (A)n Simple_repeat Simple_repeat 1 20 0 5 630 431 65 387 11 chr1 5964652 5964745 -191230687 + B2_Mm2 SINE B2 61 188 -7 5 630 1158 111 6 23 chr1 5964751 5964927 -191230505 + B2_Mm1t SINE B2 2 174 -19 5 630 207 0 0 0 chr1 5964929 5964952 -191230480 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 5 630 288 341 18 6 chr1 5966153 5966324 -191229108 + SRV_MM-int LTR ERVK 1955 2127 -4040 5 630 207 0 0 0 chr1 5966627 5966650 -191228782 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 630 516 179 8 86 chr1 5966650 5966768 -191228664 - ID_B1 SINE B4 -7 217 107 5 630 941 68 0 0 chr1 5966653 5966770 -191228662 - B1_Mus1 SINE Alu -7 141 25 5 630 1041 109 0 0 chr1 5966782 5966929 -191228503 + B1_Mm SINE Alu 1 147 0 5 630 234 139 0 0 chr1 5966988 5967031 -191228401 + L1VL4 LINE L1 1 43 -6259 5 630 10760 104 13 4 chr1 5967032 5969587 -191225845 + L1VL4 LINE L1 19 2598 -961 5 630 3376 196 12 20 chr1 5969584 5969928 -191225504 + Lx LINE L1 5100 5446 -437 5 630 890 126 0 12 chr1 5969928 5970089 -191225343 + L1_Mus4 LINE L1 6471 6629 -7 5 630 5462 169 28 13 chr1 5970089 5970516 -191224916 + Lx LINE L1 5447 5865 -789 5 630 597 49 0 0 chr1 5970516 5970597 -191224835 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 630 5462 154 37 10 chr1 5970597 5971359 -191224073 + Lx LINE L1 5866 6651 -3 5 630 1120 131 11 0 chr1 5971462 5971638 -191223794 + B2_Mm1t SINE B2 2 179 -14 5 630 385 104 0 5 chr1 5971666 5971731 -191223701 + B2_Mm2 SINE B2 47 109 -107 5 630 29 28 0 0 chr1 5971735 5971771 -191223661 + AT_rich Low_complexity Low_complexity 1 36 0 5 630 601 242 126 55 chr1 5972172 5972361 -191223071 + RLTR10A LTR ERVK 140 346 -65 5 630 698 29 20 0 chr1 5972361 5972463 -191222969 - L1Md_F3 LINE L1 0 6584 6481 5 630 601 242 126 55 chr1 5972463 5972527 -191222905 + RLTR10A LTR ERVK 347 411 0 5 630 307 217 45 45 chr1 5972543 5972654 -191222778 + RLTR10-int LTR ERVK 318 428 -1559 5 630 1309 311 38 46 chr1 5973093 5974349 -191221083 + RLTR45-int LTR ERVK 3511 4540 -2002 5 630 1268 34 0 0 chr1 5974349 5974496 -191220936 + B1_Mm SINE Alu 1 147 0 5 630 1769 262 45 47 chr1 5974496 5975756 -191219676 + RLTR45-int LTR ERVK 6590 7042 -202 5 630 614 268 138 4 chr1 5975797 5976037 -191219395 + RLTR10A LTR ERVK 140 411 0 5 630 342 300 61 20 chr1 5976037 5976305 -191219127 + RMER16-int LTR ERVK 1594 1806 -3600 5 630 23 78 0 0 chr1 5976383 5976434 -191218998 + AT_rich Low_complexity Low_complexity 1 51 0 5 630 255 315 37 12 chr1 5976571 5976735 -191218697 + IAPLTR3-int LTR ERVK 3763 3930 -2891 5 630 25 0 0 0 chr1 5978071 5978096 -191217336 + AT_rich Low_complexity Low_complexity 1 25 0 5 630 3139 187 40 19 chr1 5978921 5979587 -191215845 + Lx5 LINE L1 6019 6698 -352 5 630 25 51 0 0 chr1 5979711 5979750 -191215682 + AT_rich Low_complexity Low_complexity 1 39 0 5 630 22 35 0 0 chr1 5980358 5980387 -191215045 + AT_rich Low_complexity Low_complexity 1 29 0 5 630 856 245 22 98 chr1 5980478 5980754 -191214678 + MT2B LTR ERVL 283 537 -64 5 630 25 0 0 0 chr1 5980895 5980920 -191214512 + AT_rich Low_complexity Low_complexity 1 25 0 5 630 212 312 177 0 chr1 5980986 5981082 -191214350 + RSINE1 SINE B4 49 161 -4 5 630 1189 48 7 0 chr1 5981118 5981263 -191214169 + B1_Mm SINE Alu 2 147 0 5 630 505 267 0 0 chr1 5981816 5981917 -191213515 - RSINE1 SINE B4 -54 111 11 5 630 253 266 150 12 chr1 5982334 5982414 -191213018 + PB1D10 SINE Alu 22 112 -5 5 630 3851 126 198 12 chr1 5982438 5983176 -191212256 + L1VL2 LINE L1 14 888 -5447 5 630 33766 45 0 3 chr1 5983176 5988442 -191206990 + L1Md_T LINE L1 243 5589 -297 5 630 8481 30 1 0 chr1 5988442 5989437 -191205995 + L1Md_T LINE L1 5590 6585 0 5 630 12584 92 14 21 chr1 5989437 5990385 -191205047 + L1VL2 LINE L1 881 1810 -1805 5 630 1140 41 0 0 chr1 5990385 5990531 -191204901 + (TC)n Simple_repeat Simple_repeat 1 146 0 5 630 1035 82 7 0 chr1 5990531 5990666 -191204766 - B1_Mus1 SINE Alu -12 136 1 5 630 12584 92 17 20 chr1 5990666 5991830 -191203602 + L1VL2 LINE L1 1811 2987 -628 5 630 46 54 0 0 chr1 5992366 5992440 -191202992 + AT_rich Low_complexity Low_complexity 1 74 0 5 630 833 219 60 15 chr1 5992657 5992802 -191202630 + B3 SINE B2 4 156 -60 5 630 672 77 0 0 chr1 5992802 5992893 -191202539 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 630 833 219 60 15 chr1 5992893 5992946 -191202486 + B3 SINE B2 157 211 -5 5 630 271 297 0 13 chr1 5992964 5993039 -191202393 + B4A SINE B4 217 290 -2 5 630 191 146 24 0 chr1 5993110 5993151 -191202281 + GA-rich Low_complexity Low_complexity 2 43 0 5 630 1325 46 17 0 chr1 5993154 5993329 -191202103 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 630 276 279 13 0 chr1 5993341 5993420 -191202012 + ID4 SINE ID 2 81 -2 5 630 21 89 0 0 chr1 5993943 5993999 -191201433 + AT_rich Low_complexity Low_complexity 1 56 0 5 630 243 0 0 0 chr1 5994037 5994064 -191201368 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 630 330 286 0 0 chr1 5994705 5994782 -191200650 + PB1D10 SINE Alu 27 103 -14 6 630 2527 125 29 11 chr1 5994937 5995415 -191200017 - MusHAL1 LINE L1 -1789 923 437 6 630 3110 123 69 68 chr1 5995415 5995695 -191199737 - RMER17D2 LTR ERVK -144 665 376 6 630 1084 48 7 7 chr1 5995695 5995843 -191199589 + (GGAGA)n Simple_repeat Simple_repeat 2 149 0 6 630 3110 123 69 68 chr1 5995843 5996226 -191199206 - RMER17D2 LTR ERVK -434 375 1 6 630 3165 128 43 29 chr1 5996231 5996809 -191198623 - L1VL2 LINE L1 -5617 718 133 6 630 1459 241 40 78 chr1 5997022 5997499 -191197933 - RLTR40 LTR ERVK -11 806 348 6 630 240 227 17 52 chr1 5997499 5997545 -191197887 + T-rich Low_complexity Low_complexity 68 114 0 6 630 1201 68 0 0 chr1 5997545 5997693 -191197739 - B1_Mus1 SINE Alu 0 148 1 6 630 240 227 17 52 chr1 5997693 5997762 -191197670 + T-rich Low_complexity Low_complexity 3 67 0 6 630 608 241 32 0 chr1 5997763 5997921 -191197511 - Lx7 LINE L1 0 7696 7534 6 630 862 203 158 46 chr1 5997976 5998260 -191197172 - RLTR40 LTR ERVK -491 326 11 6 630 468 0 0 0 chr1 5998893 5998945 -191196487 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 630 2891 9 0 0 chr1 5999106 5999428 -191196004 - RLTRETN_Mm LTR ERVK 0 322 1 6 630 4751 12 0 12 chr1 5999428 6000000 -191195432 - MMETn-int LTR ERVK 0 4844 4280 6 630 2243 44 0 0 chr1 6000000 6000273 -191195159 - MMETn-int LTR ERVK -565 4279 4007 1 630 1106 30 0 0 chr1 6000259 6000393 -191195039 - MMETn-int LTR ERVK -1107 3737 3604 1 630 22691 22 0 6 chr1 6000390 6003183 -191192249 - MMETn-int LTR ERVK -2066 2778 1 1 630 2901 9 0 0 chr1 6003183 6003505 -191191927 - RLTRETN_Mm LTR ERVK 0 322 1 1 630 330 314 100 44 chr1 6004530 6004710 -191190722 + ORR1E LTR MaLR 1 190 -169 2 630 235 300 37 24 chr1 6004811 6004893 -191190539 + ORR1E LTR MaLR 280 362 -17 2 630 1980 156 22 70 chr1 6005604 6006005 -191189427 - RLTR9A2 LTR ERVK -1 382 1 3 630 37 62 0 0 chr1 6006731 6006796 -191188636 + AT_rich Low_complexity Low_complexity 1 65 0 4 630 182 37 37 0 chr1 6007088 6007115 -191188317 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 630 907 261 69 42 chr1 6007134 6007542 -191187890 - L1_Mur3 LINE L1 -507 5793 5375 6 630 2896 35 3 6 chr1 6007542 6007889 -191187543 - ORR1A0 LTR MaLR 0 346 1 7 630 516 288 149 48 chr1 6007889 6008296 -191187136 - L1_Mur3 LINE L1 -772 5371 4922 6 630 644 227 15 69 chr1 6008291 6008510 -191186922 - L1_Rod LINE L1 -1441 4705 4485 8 630 12626 104 20 39 chr1 6008563 6011585 -191183847 - L1VL2 LINE L1 -627 2988 37 9 630 3325 219 79 21 chr1 6011587 6012435 -191182997 - L1_Rod LINE L1 -1356 4491 3582 8 630 288 0 0 0 chr1 6012435 6012467 -191182965 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 630 3325 219 79 21 chr1 6012467 6012680 -191182752 - L1_Rod LINE L1 -2266 3581 3368 8 630 357 294 76 76 chr1 6012680 6012864 -191182568 - RLTR23 LTR ERV1 0 430 247 1 630 3947 211 53 65 chr1 6013130 6013375 -191182057 - L1_Rod LINE L1 -2469 3378 3123 8 630 279 0 0 0 chr1 6013375 6013406 -191182026 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 630 3947 211 53 65 chr1 6013406 6014431 -191181001 - L1_Rod LINE L1 -2725 3122 2124 8 630 270 0 0 0 chr1 6015952 6015982 -191179450 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 630 288 0 0 0 chr1 6016010 6016042 -191179390 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 630 2721 196 36 61 chr1 6016042 6016894 -191178538 - L1_Rod LINE L1 -3763 2084 1254 8 630 33049 65 16 8 chr1 6016925 6023118 -191172314 + L1_Mus3 LINE L1 391 6638 0 1 630 382 248 22 31 chr1 6023136 6023251 -191172181 + B1F SINE Alu 2 148 -1 1 630 351 0 0 0 chr1 6023324 6023363 -191172069 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 630 209 198 47 0 chr1 6023367 6023453 -191171979 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 630 291 356 85 33 chr1 6023691 6023903 -191171529 - MLT1B LTR MaLR -67 323 101 1 630 217 345 0 0 chr1 6024602 6024660 -191170772 + MIR SINE MIR 44 101 -107 2 630 255 236 0 0 chr1 6024802 6024857 -191170575 - L1MA6 LINE L1 -64 6236 6182 2 630 1892 179 63 14 chr1 6024863 6025230 -191170202 - ORR1B1 LTR MaLR -9 385 1 2 630 1025 34 0 39 chr1 6025236 6025390 -191170042 + (TTTTC)n Simple_repeat Simple_repeat 2 149 0 2 630 309 242 138 25 chr1 6025391 6025594 -191169838 - L1MA6 LINE L1 -138 6162 5937 2 630 275 71 0 0 chr1 6025645 6025687 -191169745 - L1_Mus2 LINE L1 -3 6563 6522 2 630 1258 156 25 17 chr1 6025782 6026023 -191169409 - MTC LTR MaLR -2 419 177 2 630 733 248 0 0 chr1 6026029 6026174 -191169258 + B1_Mur2 SINE Alu 2 146 -3 2 630 26 30 0 0 chr1 6026195 6026228 -191169204 + AT_rich Low_complexity Low_complexity 1 33 0 2 630 772 282 43 62 chr1 6026290 6026566 -191168866 + RLTR16 LTR ERVK 1 271 -234 2 630 1139 175 4 62 chr1 6027836 6028061 -191167371 + URR1B DNA MER1_type 2 213 -12 2 78 8907 91 5 11 chr1 6028185 6030079 -191165353 + Lx3_Mus LINE L1 4563 6441 -568 3 631 585 205 51 0 chr1 6030080 6030197 -191165235 + ETnERV2-int LTR ERVK 7070 7192 -214 3 631 4052 96 5 29 chr1 6030591 6031179 -191164253 + Lx3_Mus LINE L1 6436 7009 0 3 631 261 0 0 0 chr1 6031214 6031243 -191164189 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 631 305 288 67 57 chr1 6031243 6031473 -191163959 - ORR1E LTR MaLR -23 356 90 3 631 516 327 301 39 chr1 6031491 6031839 -191163593 - MTE-int LTR MaLR -29 1551 1113 3 631 396 260 86 9 chr1 6031835 6031940 -191163492 + B1_Mur1 SINE Alu 29 141 -8 3 631 250 26 51 0 chr1 6031987 6032026 -191163406 + (GTTTG)n Simple_repeat Simple_repeat 5 45 0 3 631 996 102 0 58 chr1 6032051 6032068 -191163364 - B1_Mus1 SINE Alu 0 148 139 3 631 370 0 20 20 chr1 6032068 6032119 -191163313 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 3 631 996 102 0 58 chr1 6032119 6032257 -191163175 - B1_Mus1 SINE Alu -10 138 2 3 631 30425 92 6 6 chr1 6032356 6037493 -191157939 + L1Md_F2 LINE L1 450 5586 -297 4 631 8007 48 3 0 chr1 6037494 6038474 -191156958 + L1Md_F2 LINE L1 5588 6570 -12 4 631 714 219 7 20 chr1 6038552 6038701 -191156731 + B1_Mur1 SINE Alu 2 148 -1 4 631 249 262 0 16 chr1 6040270 6040332 -191155100 - MTE-int LTR MaLR -1492 88 28 3 631 424 291 111 63 chr1 6040442 6040695 -191154737 - ORR1E LTR MaLR -92 267 3 4 631 254 27 0 26 chr1 6041161 6041169 -191154263 + (TTTG)n Simple_repeat Simple_repeat 2 9 0 4 631 404 51 0 17 chr1 6041169 6041229 -191154203 + (GTTTG)n Simple_repeat Simple_repeat 1 59 0 4 631 254 27 0 26 chr1 6041229 6041258 -191154174 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 631 1521 123 22 64 chr1 6041609 6041905 -191153527 + ORR1C1 LTR MaLR 1 336 -48 4 631 2080 127 0 3 chr1 6041912 6042252 -191153180 - Lx5 LINE L1 -1059 5991 5653 4 631 3948 206 74 22 chr1 6042250 6043198 -191152234 + Lx5 LINE L1 6012 7008 -42 4 631 358 173 0 39 chr1 6043227 6043305 -191152127 + ORR1C1 LTR MaLR 304 378 0 4 631 312 343 43 29 chr1 6044995 6045133 -191150299 + Charlie4a DNA MER1_type 18 157 -351 4 631 461 215 43 0 chr1 6045316 6045409 -191150023 - B3A SINE B2 -101 97 1 4 631 308 228 21 42 chr1 6045743 6045885 -191149547 + L1MDa LINE L1 1310 1448 -5185 5 631 1548 233 62 30 chr1 6045894 6046296 -191149136 + MTC LTR MaLR 5 419 -2 5 631 1005 239 14 14 chr1 6046247 6046468 -191148964 - MTC LTR MaLR 0 421 201 5 631 294 29 0 0 chr1 6046490 6046525 -191148907 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 631 1366 163 50 35 chr1 6046525 6046786 -191148646 - Lx4A LINE L1 -6 7052 6788 5 631 2024 172 87 16 chr1 6046794 6047172 -191148260 + MTB_Mm LTR MaLR 1 405 -2 5 631 295 267 83 47 chr1 6047220 6047389 -191148043 - L1M3 LINE L1 -2576 3564 3390 5 631 202 115 39 0 chr1 6047520 6047572 -191147860 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 631 838 290 153 28 chr1 6048071 6048497 -191146935 + Lx8 LINE L1 6993 7471 -2 5 631 24 0 0 0 chr1 6048623 6048647 -191146785 + AT_rich Low_complexity Low_complexity 1 24 0 5 631 340 262 139 0 chr1 6048992 6049114 -191146318 - B1F1 SINE Alu 0 149 11 6 631 2748 83 12 2 chr1 6049613 6050037 -191145395 + MusHAL1 LINE L1 435 862 -1850 6 631 3039 179 0 109 chr1 6050075 6050713 -191144719 + Lx2 LINE L1 5205 5797 -86 6 631 1087 41 21 0 chr1 6050713 6050858 -191144574 + L1Md_A LINE L1 6433 6580 -2 6 631 3039 179 0 109 chr1 6050858 6050971 -191144461 + Lx2 LINE L1 5798 5874 -9 6 631 4356 149 45 10 chr1 6050974 6051415 -191144017 - RMER17D2 LTR ERVK 0 809 350 6 631 821 69 17 0 chr1 6051415 6051531 -191143901 + (GGAGA)n Simple_repeat Simple_repeat 2 119 0 6 631 4356 149 45 10 chr1 6051531 6051860 -191143572 - RMER17D2 LTR ERVK -460 349 12 6 631 4549 137 8 8 chr1 6051864 6052627 -191142805 + Lx2 LINE L1 5872 6634 -363 6 631 1252 152 13 4 chr1 6052627 6052858 -191142574 + Lx2 LINE L1 6765 6997 0 6 631 36 53 0 0 chr1 6052858 6052915 -191142517 + AT_rich Low_complexity Low_complexity 1 57 0 6 631 435 364 125 7 chr1 6053236 6053532 -191141900 + L1MD LINE L1 4672 5002 -1144 6 631 217 292 56 0 chr1 6053543 6053615 -191141817 + ID SINE ID 7 82 -142 6 631 396 258 99 43 chr1 6053640 6053802 -191141630 + L1MD LINE L1 5010 5180 -966 6 631 283 47 0 0 chr1 6053806 6053849 -191141583 + L1Md_F3 LINE L1 6528 6570 -14 6 631 772 260 12 22 chr1 6054341 6054658 -191140774 + L1MD LINE L1 5239 5553 -689 6 631 689 299 94 14 chr1 6054667 6054942 -191140490 - MT2A LTR ERVL -22 511 215 7 631 393 257 105 13 chr1 6055084 6055313 -191140119 + MER33 DNA MER1_type 60 309 -15 7 631 606 239 23 86 chr1 6055979 6056109 -191139323 + RSINE1 SINE B4 3 129 -36 7 631 249 83 0 0 chr1 6056109 6056145 -191139287 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 7 631 606 239 23 86 chr1 6056145 6056188 -191139244 + RSINE1 SINE B4 130 165 0 7 631 1000 264 143 30 chr1 6056225 6056596 -191138836 - RLTR18B LTR ERVK -2 510 98 7 631 411 282 88 6 chr1 6056662 6056844 -191138588 - Lx6 LINE L1 -2 7458 7262 7 631 987 173 0 0 chr1 6056852 6057037 -191138395 + L1Md_F2 LINE L1 446 630 -5986 7 631 32263 84 18 2 chr1 6057033 6062994 -191132438 + L1Md_F2 LINE L1 503 6559 -23 7 631 369 0 0 0 chr1 6062995 6063036 -191132396 + (TAA)n Simple_repeat Simple_repeat 2 42 0 7 631 3043 224 59 87 chr1 6063059 6064051 -191131381 + RMER17B LTR ERVK 1 892 -16 7 631 1424 268 104 11 chr1 6064096 6064928 -191130504 - Lx6 LINE L1 -211 7249 6125 7 631 472 235 10 0 chr1 6064934 6065032 -191130400 - RLTR18B LTR ERVK -413 99 1 7 631 265 293 76 79 chr1 6065131 6065500 -191129932 + MTEb LTR MaLR 4 375 -4 7 631 428 327 0 55 chr1 6065587 6065752 -191129680 + ID_B1 SINE B4 69 224 0 8 631 27 49 0 0 chr1 6065809 6065850 -191129582 + AT_rich Low_complexity Low_complexity 1 41 0 8 631 368 211 28 0 chr1 6066048 6066119 -191129313 + ID4 SINE ID 9 81 -2 8 631 238 297 0 13 chr1 6067004 6067079 -191128353 + GA-rich Low_complexity Low_complexity 1 74 0 8 631 396 0 0 0 chr1 6067264 6067308 -191128124 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 631 517 195 105 9 chr1 6068055 6068169 -191127263 + MTC LTR MaLR 10 134 -287 8 631 390 241 8 125 chr1 6068274 6068402 -191127030 + MT2A LTR ERVL 3 115 -418 8 631 1216 220 7 32 chr1 6068398 6068680 -191126752 - RLTR15 LTR ERVK -84 275 1 8 631 2741 206 25 30 chr1 6068683 6069244 -191126188 + RLTR18 LTR ERVK 57 614 -2 8 631 21 0 0 0 chr1 6069714 6069735 -191125697 + AT_rich Low_complexity Low_complexity 1 21 0 8 631 288 304 31 120 chr1 6070355 6070546 -191124886 + ID_B1 SINE B4 3 176 -48 9 631 539 209 89 7 chr1 6070784 6070919 -191124513 - B1_Mur2 SINE Alu -2 147 2 9 631 207 0 0 0 chr1 6070937 6070960 -191124472 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 631 813 223 113 105 chr1 6071013 6071064 -191124368 + MTE2b LTR MaLR 58 108 -271 9 631 1713 139 61 58 chr1 6071064 6071392 -191124040 + ORR1A4 LTR MaLR 1 329 0 9 631 813 223 113 105 chr1 6071392 6071606 -191123826 + MTE2b LTR MaLR 109 325 -54 9 631 542 194 34 114 chr1 6072016 6072191 -191123241 + Lx8 LINE L1 6761 6921 -552 9 631 380 243 68 0 chr1 6072235 6072338 -191123094 + Lx8 LINE L1 7011 7120 -353 9 631 418 336 48 44 chr1 6072732 6072749 -191122683 + Lx8 LINE L1 7104 7125 -348 9 631 854 214 116 76 chr1 6072749 6073103 -191122329 - RLTR9A LTR ERVK 0 368 1 9 631 418 336 48 44 chr1 6073103 6073312 -191122120 + Lx8 LINE L1 7126 7331 -142 9 631 352 351 5 70 chr1 6073312 6073511 -191121921 + ORR1C1 LTR MaLR 1 186 -192 9 631 256 148 16 16 chr1 6073608 6073670 -191121762 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 631 316 329 0 0 chr1 6073712 6073797 -191121635 - B4A SINE B4 -21 271 187 9 631 1055 95 135 6 chr1 6073816 6073986 -191121446 + B2_Mm1t SINE B2 1 192 -1 1 631 442 279 68 22 chr1 6074057 6074282 -191121150 - L1_Mur3 LINE L1 -2031 4112 3837 1 631 1619 26 11 0 chr1 6074284 6074475 -191120957 - B2_Mm1a SINE B2 0 193 1 1 631 1076 51 66 0 chr1 6075070 6075207 -191120225 + B1_Mm SINE Alu 2 147 0 1 631 195 42 0 0 chr1 6075207 6075231 -191120201 + (A)n Simple_repeat Simple_repeat 1 24 0 1 631 678 269 43 21 chr1 6075368 6075554 -191119878 + B3A SINE B2 8 197 -1 1 631 44 46 0 0 chr1 6075554 6075619 -191119813 + AT_rich Low_complexity Low_complexity 1 65 0 1 631 414 0 0 0 chr1 6075836 6075882 -191119550 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 631 449 200 22 0 chr1 6075887 6075977 -191119455 - PB1D9 SINE Alu -26 94 3 1 631 288 0 0 0 chr1 6076348 6076380 -191119052 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 631 384 22 0 0 chr1 6076387 6076432 -191119000 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1 631 855 102 58 0 chr1 6076432 6076569 -191118863 - B2_Mm2 SINE B2 -38 157 13 1 631 1378 99 16 0 chr1 6076569 6076760 -191118672 + B2_Mm2 SINE B2 2 195 0 1 631 752 256 73 25 chr1 6077094 6077298 -191118134 - B3 SINE B2 0 216 3 1 631 426 306 43 15 chr1 6077448 6077721 -191117711 - L1M2 LINE L1 -2287 3856 3553 1 631 361 274 156 0 chr1 6077721 6077856 -191117576 - L1M2 LINE L1 -2849 3294 3139 1 631 493 269 43 9 chr1 6077859 6077975 -191117457 - PB1D9 SINE Alu 0 120 1 1 631 641 306 14 0 chr1 6078031 6078178 -191117254 - B3A SINE B2 -48 150 2 1 631 721 296 33 5 chr1 6078549 6078763 -191116669 - ID_B1 SINE B4 -3 221 2 1 631 235 319 10 50 chr1 6078809 6078908 -191116524 - B4A SINE B4 -117 175 81 1 631 26 0 0 0 chr1 6079490 6079516 -191115916 + AT_rich Low_complexity Low_complexity 1 26 0 1 631 204 125 0 0 chr1 6079621 6079653 -191115779 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 631 901 161 1 8 chr1 6079717 6079884 -191115548 + RMER19B LTR ERVK 1 165 -572 1 631 1057 206 47 100 chr1 6079898 6080238 -191115194 + RLTRETN_Mm LTR ERVK 1 322 0 1 631 4021 185 73 25 chr1 6080238 6081033 -191114399 + RMER19B LTR ERVK 64 896 -6 1 631 4227 227 28 39 chr1 6081285 6081974 -191113458 - Lx6 LINE L1 0 7460 6772 1 631 1286 14 0 0 chr1 6081974 6082120 -191113312 + B1_Mus2 SINE Alu 2 147 0 1 631 4227 227 28 39 chr1 6082120 6082448 -191112984 - Lx6 LINE L1 -689 6771 6455 1 631 243 0 0 0 chr1 6082579 6082606 -191112826 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 631 229 323 135 0 chr1 6082834 6082930 -191112502 + B1F SINE Alu 5 113 -36 1 631 302 252 212 0 chr1 6082849 6082948 -191112484 + ID_B1 SINE B4 104 223 -1 1 631 333 293 78 26 chr1 6082953 6083107 -191112325 + RSINE1 SINE B4 2 163 -2 1 631 243 347 56 0 chr1 6083186 6083258 -191112174 + ID4 SINE ID 8 83 0 1 631 423 268 91 38 chr1 6083532 6083664 -191111768 + B1_Mur1 SINE Alu 2 140 -9 1 631 246 198 49 0 chr1 6083665 6083746 -191111686 + GA-rich Low_complexity Low_complexity 6 90 0 1 631 885 212 107 29 chr1 6085014 6085295 -191110137 - Lx8 LINE L1 -2 7471 7169 1 631 201 39 0 0 chr1 6085415 6085441 -191109991 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 631 391 264 26 35 chr1 6085469 6085583 -191109849 - PB1D7 SINE Alu -3 117 5 1 631 618 291 8 15 chr1 6085603 6085761 -191109671 - ID_B1 SINE B4 -67 225 69 1 631 220 244 90 0 chr1 6086003 6086081 -191109351 + PB1D10 SINE Alu 32 116 -1 1 631 201 244 0 0 chr1 6086085 6086126 -191109306 + GA-rich Low_complexity Low_complexity 2 42 0 1 631 210 71 0 0 chr1 6086209 6086237 -191109195 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 1 631 301 306 6 50 chr1 6086586 6086768 -191108664 + GA-rich Low_complexity Low_complexity 3 176 0 1 631 450 341 45 90 chr1 6088146 6088503 -191106929 + ORR1E LTR MaLR 1 341 -18 1 631 745 301 5 40 chr1 6088569 6088791 -191106641 - B3 SINE B2 0 216 3 1 631 958 245 19 0 chr1 6088815 6089023 -191106409 - B3 SINE B2 0 216 5 1 631 712 108 8 8 chr1 6089036 6089158 -191106274 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 631 880 92 92 0 chr1 6089159 6089290 -191106142 - B1_Mm SINE Alu 0 147 5 1 631 206 216 0 85 chr1 6089296 6089399 -191106033 + T-rich Low_complexity Low_complexity 1 94 0 1 631 727 104 60 83 chr1 6089445 6089613 -191105819 - Lx LINE L1 0 6654 6491 1 631 234 0 0 0 chr1 6089745 6089771 -191105661 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 631 248 259 69 0 chr1 6090144 6090202 -191105230 + B4 SINE B4 82 143 -149 1 631 419 262 19 0 chr1 6090625 6090732 -191104700 + B1F2 SINE Alu 41 149 0 1 631 1989 215 60 5 chr1 6091314 6091711 -191103721 - MTC LTR MaLR 0 421 3 1 631 338 250 129 10 chr1 6092303 6092404 -191103028 + PB1D9 SINE Alu 3 115 -5 1 631 186 258 65 0 chr1 6092964 6093026 -191102406 - L4 LINE RTE -1614 415 350 1 631 2123 48 0 0 chr1 6093607 6093878 -191101554 + L1Md_F2 LINE L1 5316 5586 -297 1 631 8388 34 3 1 chr1 6093878 6094872 -191100560 + L1Md_F2 LINE L1 5587 6582 0 1 631 1293 88 0 5 chr1 6095825 6096042 -191099390 + (TTTC)n Simple_repeat Simple_repeat 1 216 0 1 631 730 219 14 7 chr1 6096506 6096653 -191098779 + B1_Mur3 SINE Alu 2 149 0 1 631 342 268 139 16 chr1 6096683 6096812 -191098620 + B1F SINE Alu 3 147 -2 1 631 313 275 12 0 chr1 6096812 6096892 -191098540 + ID4_ SINE ID 2 82 -1 1 631 27 29 0 0 chr1 6096901 6096935 -191098497 + AT_rich Low_complexity Low_complexity 1 34 0 1 631 23 0 0 0 chr1 6097061 6097084 -191098348 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 433 299 46 30 chr1 6097319 6097450 -191097982 + RSINE1 SINE B4 12 144 -21 1 631 334 385 31 12 chr1 6097602 6097760 -191097672 - MER65D LTR ERV1 -98 375 215 1 631 1242 290 81 0 chr1 6097760 6098095 -191097337 - MTEa LTR MaLR 0 379 18 1 631 582 300 0 0 chr1 6098156 6098286 -191097146 + RSINE1 SINE B4 6 135 -30 1 631 351 0 0 0 chr1 6098299 6098338 -191097094 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 631 441 328 123 0 chr1 6098364 6098486 -191096946 - B1_Mur1 SINE Alu -11 138 2 1 631 383 127 32 0 chr1 6098588 6098651 -191096781 + RMER5 LTR ERV1 460 524 -10 1 631 534 323 12 30 chr1 6098783 6098949 -191096483 + RSINE1 SINE B4 3 165 0 1 631 320 286 111 25 chr1 6099157 6099341 -191096091 + B3 SINE B2 1 196 -2 1 631 678 242 64 137 chr1 6099687 6099723 -191095709 + L1_Mur2 LINE L1 904 934 -6794 1 631 1298 78 11 6 chr1 6099723 6099904 -191095528 + B2_Mm2 SINE B2 5 186 -9 1 631 769 222 176 36 chr1 6099904 6100299 -191095133 + L1_Mur2 LINE L1 919 1305 -5781 1 631 2712 199 30 4 chr1 6100300 6100799 -191094633 - RMER20A LTR ERVK -1 515 4 1 631 6693 169 48 27 chr1 6100801 6102351 -191093081 + L1_Mur2 LINE L1 1299 2881 -2996 1 631 1442 179 49 7 chr1 6102317 6102604 -191092828 + Lx LINE L1 6231 6529 -125 1 631 2248 158 48 166 chr1 6102659 6102844 -191092588 + L1_Mur2 LINE L1 3507 3716 -2161 1 631 1137 62 7 0 chr1 6102844 6102989 -191092443 + B1_Mm SINE Alu 1 146 -1 1 631 2248 158 48 166 chr1 6102989 6103254 -191092178 + L1_Mur2 LINE L1 3717 3921 -1956 1 631 4396 61 6 0 chr1 6103254 6103799 -191091633 + L1_Mus1 LINE L1 6019 6566 -1 1 631 2248 158 48 166 chr1 6103799 6104081 -191091351 + L1_Mur2 LINE L1 3922 4149 -1728 1 631 1339 96 16 0 chr1 6104081 6104268 -191091164 + B2_Mm2 SINE B2 3 192 -3 1 631 2248 158 48 166 chr1 6104268 6104308 -191091124 + L1_Mur2 LINE L1 4150 4189 -1688 1 631 620 274 73 61 chr1 6104407 6104749 -191090683 + RLTR15 LTR ERVK 2 347 -12 1 631 2892 254 40 83 chr1 6104748 6105675 -191089757 - ORR1D-int LTR MaLR -400 970 84 1 631 1868 174 3 60 chr1 6105677 6106013 -191089419 - MTC LTR MaLR 0 421 105 1 631 385 235 129 0 chr1 6106033 6106062 -191089370 - RMER17B LTR ERVK -498 460 432 1 631 510 17 0 0 chr1 6106062 6106121 -191089311 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 631 385 235 129 0 chr1 6106121 6106223 -191089209 - RMER17B LTR ERVK -527 431 313 1 631 404 200 12 0 chr1 6106224 6106304 -191089128 - MTC LTR MaLR -340 81 1 1 631 719 101 39 78 chr1 6106388 6106517 -191088915 + B2_Mm2 SINE B2 2 125 -70 1 631 1130 117 0 6 chr1 6106529 6106709 -191088723 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1 631 1254 27 0 0 chr1 6106893 6107039 -191088393 - B1_Mm SINE Alu 0 147 2 1 631 1247 229 39 11 chr1 6107039 6107317 -191088115 + MTD LTR MaLR 114 400 -19 1 631 870 200 76 22 chr1 6107617 6107801 -191087631 + ORR1B2 LTR MaLR 1 194 -173 1 631 3294 156 28 9 chr1 6107801 6108246 -191087186 + RLTR20D LTR ERVK 17 463 -105 1 631 297 0 0 0 chr1 6108246 6108279 -191087153 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 631 3294 156 28 9 chr1 6108279 6108375 -191087057 + RLTR20D LTR ERVK 464 568 0 1 631 887 220 31 20 chr1 6108375 6108558 -191086874 + ORR1B2 LTR MaLR 183 367 0 1 631 227 267 173 0 chr1 6108558 6108592 -191086840 - PB1D9 SINE Alu -20 100 67 1 631 180 0 0 0 chr1 6108592 6108612 -191086820 + (CAATT)n Simple_repeat Simple_repeat 4 23 0 1 631 227 267 173 0 chr1 6108612 6108652 -191086780 - PB1D9 SINE Alu -54 66 14 1 631 23 0 0 0 chr1 6108759 6108782 -191086650 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 1317 79 17 6 chr1 6109875 6110053 -191085379 + B2_Mm2 SINE B2 1 180 -15 1 631 324 222 0 182 chr1 6110057 6110178 -191085254 + L1VL1 LINE L1 28 126 -6296 1 631 332 262 57 8 chr1 6110309 6110432 -191085000 + L1_Mus1 LINE L1 675 803 -5813 1 631 31343 118 7 5 chr1 6110439 6114427 -191081005 + L1_Mus1 LINE L1 725 4731 -1152 1 631 198 0 0 0 chr1 6114427 6114449 -191080983 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 631 31343 95 5 2 chr1 6114449 6116279 -191079153 + L1_Mus1 LINE L1 4732 6567 0 1 631 315 0 0 0 chr1 6116403 6116438 -191078994 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 631 29085 144 76 17 chr1 6116450 6118539 -191076893 + L1Md_F LINE L1 185 2364 -3519 1 631 3658 15 13 0 chr1 6118539 6118930 -191076502 + MTA_Mm LTR MaLR 1 396 0 1 631 29085 109 38 7 chr1 6118930 6121550 -191073882 + L1Md_F LINE L1 2365 5103 -780 1 631 1203 68 0 0 chr1 6121550 6121696 -191073736 + B1_Mm SINE Alu 2 147 0 1 631 468 91 0 0 chr1 6121696 6121762 -191073670 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2 631 29085 109 38 7 chr1 6121762 6122470 -191072962 + L1Md_F LINE L1 5104 5830 -53 1 631 1820 84 60 0 chr1 6122459 6122710 -191072722 - L1_Mus1 LINE L1 -39 6528 6263 2 631 730 29 29 10 chr1 6122748 6122851 -191072581 - L1Md_F2 LINE L1 -3 6579 6475 2 631 254 184 26 13 chr1 6122876 6122953 -191072479 + (TTTG)n Simple_repeat Simple_repeat 3 80 0 2 631 339 25 0 0 chr1 6122953 6122993 -191072439 + (TGG)n Simple_repeat Simple_repeat 1 40 0 2 631 692 240 31 0 chr1 6123049 6123178 -191072254 + ETnERV2-int LTR ERVK 7070 7202 -204 2 631 987 147 21 0 chr1 6123561 6123704 -191071728 - B1_Mus1 SINE Alu 0 148 3 2 631 939 18 0 0 chr1 6123717 6123826 -191071606 + (GAAAA)n Simple_repeat Simple_repeat 1 109 0 2 631 491 82 0 14 chr1 6124811 6124885 -191070547 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 631 683 47 0 0 chr1 6125090 6125176 -191070256 - B1_Mm SINE Alu -2 145 60 2 631 563 297 77 18 chr1 6125629 6125797 -191069635 - B3 SINE B2 -10 206 29 2 631 1912 167 68 43 chr1 6126301 6126670 -191068762 + ORR1C1 LTR MaLR 1 378 0 2 631 279 0 0 0 chr1 6126711 6126742 -191068690 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 631 21 0 0 0 chr1 6127205 6127226 -191068206 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 237 132 0 0 chr1 6127327 6127365 -191068067 + (T)n Simple_repeat Simple_repeat 1 38 0 2 631 661 261 72 0 chr1 6127850 6127988 -191067444 + B1_Mur2 SINE Alu 2 149 0 2 631 1834 160 57 21 chr1 6128081 6128414 -191067018 - MTC LTR MaLR -76 345 1 2 631 699 49 0 0 chr1 6128439 6128521 -191066911 + L1Md_F3 LINE L1 5505 5586 -297 2 631 9141 25 0 4 chr1 6128521 6129523 -191065909 + L1Md_F3 LINE L1 5587 6584 0 2 631 789 212 36 0 chr1 6129582 6129719 -191065713 + B1_Mur2 SINE Alu 1 142 -7 2 631 3613 131 106 50 chr1 6130209 6130851 -191064581 + RLTR33 LTR ERVK 1 678 0 2 631 391 35 35 0 chr1 6130869 6130926 -191064506 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 631 348 203 143 39 chr1 6130939 6131016 -191064416 + PB1D10 SINE Alu 42 127 0 2 631 761 246 58 11 chr1 6131426 6131615 -191063817 + B3A SINE B2 1 198 0 2 631 210 161 17 35 chr1 6132231 6132289 -191063143 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 2 631 1475 73 5 10 chr1 6132293 6132487 -191062945 + B2_Mm2 SINE B2 1 193 -2 2 631 320 245 0 155 chr1 6133143 6133259 -191062173 + MT2B LTR ERVL 161 258 -343 2 631 787 159 0 22 chr1 6133170 6133305 -191062127 + B1_Mur2 SINE Alu 17 148 -1 2 631 38 37 0 35 chr1 6134053 6134075 -191061357 + AT_rich Low_complexity Low_complexity 1 22 0 2 631 657 202 154 40 chr1 6134075 6134250 -191061182 + B3A SINE B2 1 195 -3 2 631 38 37 0 35 chr1 6134250 6134279 -191061153 + AT_rich Low_complexity Low_complexity 1 29 0 2 631 398 208 123 39 chr1 6134279 6134409 -191061023 + B1F SINE Alu 1 141 -8 2 631 38 37 0 35 chr1 6134409 6134441 -191060991 + AT_rich Low_complexity Low_complexity 1 31 0 2 631 1184 72 0 0 chr1 6134444 6134582 -191060850 + B1_Mm SINE Alu 1 138 -9 2 631 365 294 49 0 chr1 6134610 6134712 -191060720 - ID_B1 SINE B4 -31 193 87 2 631 770 182 65 29 chr1 6134727 6134897 -191060535 + Charlie12 DNA MER1_type 2698 2873 0 2 631 254 176 0 19 chr1 6134897 6134949 -191060483 + L1_Mur3 LINE L1 4427 4477 -1403 2 631 254 194 0 16 chr1 6134949 6135012 -191060420 + GA-rich Low_complexity Low_complexity 2 63 0 2 631 40571 29 2 7 chr1 6135072 6141300 -191054132 - L1Md_T LINE L1 0 6582 391 2 631 405 353 25 50 chr1 6141415 6141576 -191053856 + RSINE1 SINE B4 1 157 -8 2 631 732 288 41 8 chr1 6141692 6141890 -191053542 + B3A SINE B2 7 214 -2 2 631 698 313 26 30 chr1 6141907 6142174 -191053258 + L1_Mur3 LINE L1 5384 5649 -231 2 631 258 285 38 77 chr1 6142818 6142950 -191052482 - MER5A1 DNA MER1_type -18 148 22 2 631 558 266 114 0 chr1 6142999 6143183 -191052249 + B3 SINE B2 2 206 -10 2 631 243 0 0 0 chr1 6143363 6143390 -191052042 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 631 326 73 0 68 chr1 6143913 6143956 -191051476 + (T)n Simple_repeat Simple_repeat 1 43 0 2 631 1100 97 14 0 chr1 6143956 6144101 -191051331 - B1_Mm SINE Alu 0 147 1 2 631 326 73 0 68 chr1 6144101 6144116 -191051316 + (T)n Simple_repeat Simple_repeat 1 12 0 2 631 373 284 84 0 chr1 6144305 6144400 -191051032 + B1F1 SINE Alu 9 111 -38 2 631 839 277 123 0 chr1 6144527 6144819 -191050613 - MER2 DNA MER2_type -10 335 8 2 631 230 191 43 0 chr1 6145113 6145160 -191050272 + RLTRETN_Mm LTR ERVK 1 49 -273 2 631 688 109 0 68 chr1 6145230 6145348 -191050084 - B2_Mm2 SINE B2 -83 112 3 2 631 1284 48 0 0 chr1 6146017 6146164 -191049268 + B1_Mm SINE Alu 1 147 0 2 631 925 150 42 14 chr1 6146183 6146315 -191049117 + B1_Mur4 SINE Alu 4 141 -9 2 631 207 0 0 0 chr1 6146315 6146338 -191049094 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 631 207 0 0 0 chr1 6146375 6146398 -191049034 + (A)n Simple_repeat Simple_repeat 1 23 0 2 631 621 242 83 0 chr1 6146398 6146518 -191048914 - B1_Mur1 SINE Alu -13 136 7 2 631 314 269 37 37 chr1 6146425 6146533 -191048899 - MT2B LTR ERVL -338 263 156 2 631 257 291 35 81 chr1 6146539 6146625 -191048807 + PB1D10 SINE Alu 34 115 -2 2 631 411 256 162 48 chr1 6147002 6147273 -191048159 + L1MC3 LINE L1 6451 6752 -1033 2 631 454 158 208 0 chr1 6147286 6147387 -191048045 + B3A SINE B2 2 123 -75 2 631 1387 85 11 0 chr1 6147480 6147656 -191047776 + B2_Mm1t SINE B2 2 179 -14 2 631 953 86 62 0 chr1 6147800 6147928 -191047504 + B1_Mus1 SINE Alu 1 136 -12 2 631 375 23 0 0 chr1 6147928 6147972 -191047460 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 631 3261 147 27 14 chr1 6148143 6148701 -191046731 + RLTR1D LTR ERV1 25 589 -16 2 631 382 344 16 0 chr1 6148719 6148844 -191046588 - ORR1E LTR MaLR -232 127 1 2 631 214 301 12 12 chr1 6148845 6148929 -191046503 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 631 377 275 76 19 chr1 6149054 6149193 -191046239 - PB1D10 SINE Alu 0 149 1 2 631 22 0 0 0 chr1 6149520 6149542 -191045890 + AT_rich Low_complexity Low_complexity 1 22 0 2 631 414 244 210 0 chr1 6149846 6149965 -191045467 - ID_B1 SINE B4 -2 222 79 2 631 3340 252 87 24 chr1 6150249 6151173 -191044259 + Lx6 LINE L1 6290 7271 -189 2 631 257 333 44 0 chr1 6151335 6151425 -191044007 + B1_Mus1 SINE Alu 38 131 -17 2 631 240 258 134 0 chr1 6151627 6151642 -191043790 - MT2B2 LTR ERVL -321 263 212 2 631 272 265 162 0 chr1 6151642 6151710 -191043722 - ID_B1 SINE B4 -58 166 88 2 631 240 258 134 0 chr1 6151710 6151724 -191043708 - MT2B2 LTR ERVL -321 211 154 2 631 183 114 0 0 chr1 6151931 6151966 -191043466 + (T)n Simple_repeat Simple_repeat 1 35 0 2 631 585 247 23 53 chr1 6152062 6152233 -191043199 - B4 SINE B4 -126 166 1 2 631 654 143 0 97 chr1 6152340 6152425 -191043007 - B2_Mm1t SINE B2 -80 113 36 2 631 1333 104 27 0 chr1 6152425 6152608 -191042824 - B2_Mm1t SINE B2 -5 188 1 2 631 654 143 0 97 chr1 6152608 6152646 -191042786 - B2_Mm1t SINE B2 -158 35 2 2 631 1266 68 0 0 chr1 6152685 6152832 -191042600 - B1_Mm SINE Alu 0 147 1 2 631 1225 108 6 6 chr1 6152832 6153009 -191042423 - L1_Mus4 LINE L1 -16 6620 6444 2 631 4713 74 12 2 chr1 6153342 6153923 -191041509 - LTRIS_Mus LTR ERV1 0 587 1 2 631 6386 117 13 24 chr1 6153923 6154132 -191041300 - MuRRS-int LTR ERV1 0 4690 4483 2 631 4533 92 2 46 chr1 6154132 6154746 -191040686 - LTRIS_Mus LTR ERV1 0 587 1 2 631 6386 117 13 24 chr1 6154746 6155491 -191039941 - MuRRS-int LTR ERV1 -208 4482 3747 2 631 3869 118 6 58 chr1 6155528 6156270 -191039162 - MuRRS-int LTR ERV1 -1023 3667 3121 2 631 3121 149 119 61 chr1 6156261 6156947 -191038485 - MuRRS-int LTR ERV1 -2841 1849 1124 2 631 1269 106 6 6 chr1 6157127 6157308 -191038124 - MuRRS-int LTR ERV1 -3608 1082 902 2 631 6178 40 4 0 chr1 6157308 6158190 -191037242 + L1Md_F2 LINE L1 5130 6016 -566 2 631 3159 23 42 3 chr1 6158190 6158543 -191036889 + IAPLTR1_Mm LTR ERVK 1 367 0 2 631 6721 61 83 13 chr1 6158543 6159455 -191035977 + IAPEz-int LTR ERVK 8 983 -5498 2 78 28026 17 1 2 chr1 6159439 6162537 -191032895 + IAPEz-int LTR ERVK 3384 6478 -3 2 632 3159 23 42 3 chr1 6162541 6162894 -191032538 + IAPLTR1_Mm LTR ERVK 1 367 0 2 632 4806 54 2 2 chr1 6162894 6163453 -191031979 + L1Md_F2 LINE L1 6011 6569 -13 2 632 1857 131 47 79 chr1 6163458 6164100 -191031332 - MuRRS-int LTR ERV1 -3840 850 1 2 632 4715 84 3 0 chr1 6164100 6164685 -191030747 - LTRIS_Mus LTR ERV1 0 587 1 2 632 264 318 0 12 chr1 6164737 6164823 -191030609 + RLTR24 LTR ERV1 1 85 -444 2 632 204 138 10 78 chr1 6165558 6165660 -191029772 + T-rich Low_complexity Low_complexity 3 97 0 2 632 774 56 0 0 chr1 6166382 6166490 -191028942 + (CA)n Simple_repeat Simple_repeat 2 109 0 2 632 234 0 0 0 chr1 6166782 6166808 -191028624 + (A)n Simple_repeat Simple_repeat 1 26 0 2 632 240 21 20 78 chr1 6166861 6166912 -191028520 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 2 632 1238 69 0 0 chr1 6166913 6167058 -191028374 - B1_Mus1 SINE Alu -2 146 2 2 632 274 366 20 15 chr1 6168080 6168277 -191027155 + RLTR4_MM-int LTR ERV1 2651 2848 -4758 2 632 823 231 36 63 chr1 6168278 6168500 -191026932 + B3 SINE B2 1 216 0 2 632 1497 149 32 28 chr1 6168687 6168971 -191026461 + RMER10B LTR ERVL 1 285 -113 2 632 415 350 37 30 chr1 6169092 6169390 -191026042 + RLTR4_MM-int LTR ERV1 3100 3399 -4202 2 632 389 311 25 20 chr1 6169492 6169692 -191025740 + MuRRS4-int LTR ERV1 2228 2428 -2635 2 632 296 344 18 18 chr1 6169766 6169932 -191025500 + MuRRS4-int LTR ERV1 2251 2416 -2901 2 632 319 301 22 11 chr1 6170090 6170268 -191025164 + MuRRS4-int LTR ERV1 2869 3048 -2015 2 632 912 148 111 33 chr1 6170403 6170584 -191024848 + URR1B DNA MER1_type 31 225 0 2 632 22 0 0 0 chr1 6170660 6170682 -191024750 + AT_rich Low_complexity Low_complexity 1 22 0 2 632 1320 118 0 5 chr1 6170685 6170880 -191024552 + B2_Mm2 SINE B2 2 195 0 2 632 201 74 0 0 chr1 6171301 6171328 -191024104 + (A)n Simple_repeat Simple_repeat 1 27 0 2 632 2609 136 0 26 chr1 6171941 6172358 -191023074 + MTB_Mm LTR MaLR 1 406 -1 2 632 25 0 0 0 chr1 6172426 6172451 -191022981 + AT_rich Low_complexity Low_complexity 1 25 0 2 632 440 271 57 73 chr1 6173373 6173620 -191021812 + RLTR14-int LTR ERV1 4892 5134 -183 3 632 2875 189 81 15 chr1 6173899 6174501 -191020931 + RLTR26 LTR ERVK 1 642 0 3 632 380 211 35 174 chr1 6174616 6174788 -191020644 + L1VL1 LINE L1 210 357 -6065 3 632 481 236 45 40 chr1 6174829 6175035 -191020397 + L1Md_F LINE L1 405 802 -5814 3 632 7270 123 12 32 chr1 6175005 6176764 -191018668 + L1Md_F LINE L1 725 2440 -3443 3 632 442 213 45 83 chr1 6176764 6176789 -191018643 + B4 SINE B4 71 90 -202 3 632 840 81 0 31 chr1 6176789 6176916 -191018516 + B1_Mus1 SINE Alu 1 123 -25 3 632 815 260 272 66 chr1 6177339 6177644 -191017788 + ORR1E LTR MaLR 3 370 0 3 632 277 304 17 59 chr1 6177655 6177774 -191017658 - ID_B1 SINE B4 -1 223 110 3 632 23 0 0 0 chr1 6177794 6177817 -191017615 + AT_rich Low_complexity Low_complexity 1 23 0 3 632 192 328 49 0 chr1 6177877 6177938 -191017494 - MIR SINE MIR -153 109 46 3 632 377 253 24 0 chr1 6177984 6178067 -191017365 - PB1D7 SINE Alu -29 91 7 3 632 24 0 0 0 chr1 6178081 6178105 -191017327 + AT_rich Low_complexity Low_complexity 1 24 0 3 632 345 315 76 53 chr1 6179038 6179209 -191016223 + B4A SINE B4 38 212 -80 3 632 301 320 70 31 chr1 6179235 6179364 -191016068 + RMER5 LTR ERV1 390 523 -11 3 632 392 353 121 0 chr1 6179600 6179716 -191015716 - B3A SINE B2 -30 168 39 3 632 1156 58 0 0 chr1 6179754 6179892 -191015540 - B1_Mus2 SINE Alu -9 138 1 3 632 1391 160 68 17 chr1 6180330 6180739 -191014693 + RLTR19 LTR ERVK 1 484 -15 3 632 451 272 47 23 chr1 6180972 6181100 -191014332 - B1F1 SINE Alu -6 143 13 3 632 1146 69 0 0 chr1 6181173 6181318 -191014114 - B1_Mus2 SINE Alu 0 147 3 3 632 362 261 35 18 chr1 6181786 6181899 -191013533 + PB1D7 SINE Alu 1 115 -5 3 632 469 164 0 0 chr1 6181921 6181994 -191013438 + B3A SINE B2 3 75 -123 3 632 203 175 18 0 chr1 6182050 6182107 -191013325 + A-rich Low_complexity Low_complexity 4 61 0 3 632 508 155 138 65 chr1 6182457 6182595 -191012837 - B1_Mur3 SINE Alu 0 149 2 3 632 315 71 0 0 chr1 6182605 6182647 -191012785 + (T)n Simple_repeat Simple_repeat 1 42 0 3 632 21 0 0 0 chr1 6183251 6183272 -191012160 + AT_rich Low_complexity Low_complexity 1 21 0 3 632 242 138 52 0 chr1 6183324 6183382 -191012050 + A-rich Low_complexity Low_complexity 1 61 0 3 632 235 208 49 49 chr1 6183493 6183574 -191011858 - L1M5 LINE L1 -337 5827 5747 3 632 250 358 25 0 chr1 6183973 6184054 -191011378 - ID2 SINE ID 0 83 1 3 632 957 106 42 0 chr1 6184157 6184299 -191011133 + B1_Mus1 SINE Alu 1 148 0 3 632 257 48 48 0 chr1 6184302 6184344 -191011088 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 3 632 24 0 0 0 chr1 6184391 6184415 -191011017 + AT_rich Low_complexity Low_complexity 1 24 0 3 632 1164 61 0 0 chr1 6184871 6185018 -191010414 - B1_Mus2 SINE Alu 0 147 1 3 632 543 176 123 25 chr1 6185089 6185211 -191010221 + B1_Mus2 SINE Alu 2 135 -12 3 632 290 370 66 12 chr1 6185376 6185543 -191009889 + MER20 DNA MER1_type 2 177 -42 3 632 1006 76 6 77 chr1 6185571 6185727 -191009705 - B1_Mus2 SINE Alu -1 146 2 3 632 324 284 91 9 chr1 6186224 6186334 -191009098 - RSINE1 SINE B4 -44 121 3 3 632 27 29 0 0 chr1 6186334 6186368 -191009064 + AT_rich Low_complexity Low_complexity 1 34 0 3 632 841 134 30 0 chr1 6186371 6186505 -191008927 + B1_Mur4 SINE Alu 6 143 -7 3 632 342 0 0 0 chr1 6186794 6186832 -191008600 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 632 493 255 38 0 chr1 6186842 6186948 -191008484 - RSINE1 SINE B4 -54 111 2 3 632 729 55 18 18 chr1 6186951 6187063 -191008369 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 3 632 279 133 638 9 chr1 6187075 6187190 -191008242 - B3 SINE B2 -1 215 28 3 632 783 150 35 35 chr1 6187210 6187355 -191008077 - B1_Mur4 SINE Alu -1 149 5 3 632 214 164 72 116 chr1 6187359 6187428 -191008004 - B1_Mur2 SINE Alu -19 130 65 3 632 763 272 41 0 chr1 6187482 6187677 -191007755 - ID_B1 SINE B4 -3 221 19 3 632 360 0 0 0 chr1 6187688 6187728 -191007704 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 632 298 250 22 11 chr1 6187730 6187819 -191007613 + G-rich Low_complexity Low_complexity 1 90 0 3 632 446 191 164 52 chr1 6187822 6187938 -191007494 - B1_Mur4 SINE Alu -13 137 9 3 632 299 230 32 75 chr1 6187857 6187951 -191007481 - B4A SINE B4 -125 167 78 3 632 1653 86 49 4 chr1 6187972 6188217 -191007215 + Lx3_Mus LINE L1 6754 7009 0 3 632 778 190 247 51 chr1 6188260 6188564 -191006868 + MT2A LTR ERVL 1 524 -9 3 632 670 241 72 30 chr1 6188572 6188739 -191006693 - B3A SINE B2 -24 174 1 3 632 717 217 7 0 chr1 6188903 6189041 -191006391 - B1_Mur2 SINE Alu -8 141 3 3 632 1841 255 93 22 chr1 6189116 6189741 -191005691 - Lx8 LINE L1 -396 7077 6409 3 632 1226 41 0 0 chr1 6189825 6189971 -191005461 - B1_Mus1 SINE Alu 0 148 3 3 632 15195 115 32 22 chr1 6190172 6191759 -191003673 + L1_Mus3 LINE L1 3252 4866 -1017 3 632 306 0 0 0 chr1 6191759 6191793 -191003639 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 632 331 73 0 0 chr1 6191793 6191843 -191003589 - B1_Mus2 SINE Alu -11 136 60 3 632 15195 91 17 21 chr1 6191843 6193573 -191001859 + L1_Mus3 LINE L1 4867 6630 -8 3 632 29 47 0 0 chr1 6193629 6193672 -191001760 + AT_rich Low_complexity Low_complexity 1 43 0 3 632 501 258 289 62 chr1 6193810 6194114 -191001318 + RMER5 LTR ERV1 19 391 -143 3 632 344 322 23 0 chr1 6194305 6194410 -191001022 + PB1D10 SINE Alu 2 116 -4 3 632 547 229 68 0 chr1 6194419 6194537 -191000895 + RSINE1 SINE B4 7 132 -33 3 632 641 259 103 93 chr1 6194604 6194894 -191000538 + MT2B LTR ERVL 1 293 -308 3 632 3422 193 40 4 chr1 6194894 6195570 -190999862 + MERVL_2A-int LTR ERVL 4801 5500 -261 3 632 980 66 22 7 chr1 6195609 6195747 -190999685 - B1_Mus1 SINE Alu -1 147 8 3 632 570 162 18 0 chr1 6195764 6195875 -190999557 + MERVL_2A-int LTR ERVL 5578 5690 -71 3 632 588 131 1 1 chr1 6195893 6196000 -190999432 + MERVL_2A-int LTR ERVL 5651 5761 0 3 632 1052 169 361 52 chr1 6196000 6196457 -190998975 + MT2B LTR ERVL 3 600 -1 3 632 412 257 28 28 chr1 6196459 6196567 -190998865 - B1_Mur1 SINE Alu -40 109 2 3 632 322 302 58 41 chr1 6196567 6196579 -190998853 - B4 SINE B4 -93 198 77 3 632 302 138 76 8 chr1 6197269 6197368 -190998064 - B2_Mm2 SINE B2 -4 191 47 3 632 1103 95 54 0 chr1 6197419 6197587 -190997845 - B2_Mm1t SINE B2 -14 179 3 3 632 488 271 37 0 chr1 6197630 6197737 -190997695 - B1_Mur2 SINE Alu -37 112 2 3 632 1197 62 0 0 chr1 6197782 6197928 -190997504 - B1_Mus1 SINE Alu -1 147 2 3 632 561 288 137 0 chr1 6197951 6198097 -190997335 - B3 SINE B2 -48 168 3 3 632 1336 77 11 16 chr1 6198121 6198307 -190997125 - B2_Mm1t SINE B2 -8 185 1 3 632 235 300 15 111 chr1 6198602 6198616 -190996816 + MT2B LTR ERVL 159 278 -321 3 632 358 283 59 50 chr1 6198616 6198735 -190996697 + B1_Mus2 SINE Alu 1 120 -27 3 632 1110 36 0 7 chr1 6198761 6198900 -190996532 - B1_Mus2 SINE Alu 0 147 10 3 632 735 278 97 31 chr1 6198896 6199186 -190996246 - RMER5 LTR ERV1 -177 357 49 3 632 1173 109 6 0 chr1 6199206 6199371 -190996061 - B2_Mm2 SINE B2 -28 167 2 3 632 631 211 18 0 chr1 6199750 6199859 -190995573 + RSINE1 SINE B4 9 119 -46 3 632 681 182 58 7 chr1 6200082 6200220 -190995212 + B1_Mus2 SINE Alu 2 146 -1 3 632 832 41 195 8 chr1 6200489 6200612 -190994820 - B1_Mm SINE Alu -1 146 1 3 632 1294 174 32 32 chr1 6200776 6201060 -190994372 - RMER10B LTR ERVL -114 284 1 3 632 694 242 98 49 chr1 6201117 6201321 -190994111 + B3 SINE B2 1 214 -2 3 632 26 74 0 0 chr1 6201993 6202047 -190993385 + AT_rich Low_complexity Low_complexity 1 54 0 3 632 449 254 18 35 chr1 6203389 6203503 -190991929 - RSINE1 SINE B4 -53 112 1 3 632 332 167 306 20 chr1 6203510 6203608 -190991824 - B1_Mus2 SINE Alu -21 126 1 3 632 345 301 79 9 chr1 6206029 6206143 -190989289 + B1F SINE Alu 28 149 0 3 632 961 53 105 0 chr1 6207103 6207236 -190988196 - B1_Mus2 SINE Alu 0 147 1 3 632 194 127 0 52 chr1 6207261 6207292 -190988140 + T-rich Low_complexity Low_complexity 26 55 0 3 632 1053 77 21 0 chr1 6207292 6207435 -190987997 - B1_Mm SINE Alu -1 146 1 3 632 194 127 0 52 chr1 6207435 6207461 -190987971 + T-rich Low_complexity Low_complexity 1 25 0 3 632 560 213 47 8 chr1 6208545 6208673 -190986759 + B3A SINE B2 1 133 -65 3 632 2092 136 103 27 chr1 6208722 6209160 -190986272 - Lx LINE L1 -15 6639 6169 3 632 275 111 401 0 chr1 6209555 6209662 -190985770 - B2_Mm2 SINE B2 0 195 46 3 632 1111 142 11 0 chr1 6209690 6209866 -190985566 - B2_Mm1t SINE B2 -14 179 2 3 632 595 239 14 55 chr1 6210366 6210512 -190984920 - B1F2 SINE Alu -8 141 2 3 632 21 0 0 0 chr1 6210611 6210632 -190984800 + AT_rich Low_complexity Low_complexity 1 21 0 3 632 451 264 146 0 chr1 6210651 6210761 -190984671 - B3 SINE B2 -89 127 2 3 632 923 66 86 22 chr1 6211295 6211434 -190983998 - B1_Mus1 SINE Alu 0 148 1 3 632 676 285 72 47 chr1 6211839 6212088 -190983344 - ID_B1 SINE B4 -14 278 15 3 632 239 242 16 0 chr1 6212208 6212270 -190983162 - MER2 DNA MER2_type -160 185 123 4 632 768 198 117 20 chr1 6212403 6212599 -190982833 - B3 SINE B2 -1 215 1 4 632 216 0 0 0 chr1 6212760 6212784 -190982648 + (T)n Simple_repeat Simple_repeat 1 24 0 4 632 218 321 0 0 chr1 6212848 6212904 -190982528 + PB1 SINE Alu 70 125 -2 4 632 1232 54 0 0 chr1 6212919 6213066 -190982366 + B1_Mus2 SINE Alu 1 147 0 4 632 324 153 39 0 chr1 6213565 6213630 -190981802 - B1_Mur2 SINE Alu -11 138 72 4 632 378 220 210 8 chr1 6214342 6214461 -190980971 - ORR1D1 LTR MaLR -61 313 171 4 632 1111 83 62 72 chr1 6214577 6214772 -190980660 - B2_Mm1t SINE B2 0 193 1 4 632 579 139 9 69 chr1 6214779 6214895 -190980537 - B2_Mm1t SINE B2 0 193 85 4 632 180 0 0 0 chr1 6215478 6215498 -190979934 + (A)n Simple_repeat Simple_repeat 1 20 0 4 632 270 380 103 17 chr1 6216032 6216206 -190979226 + MIRb SINE MIR 46 234 -34 4 632 342 0 0 0 chr1 6216580 6216618 -190978814 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 632 1992 155 35 19 chr1 6216770 6216792 -190978640 - ORR1B1 LTR MaLR -4 390 373 4 632 183 42 0 0 chr1 6216792 6216816 -190978616 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 632 1992 155 35 19 chr1 6216816 6217161 -190978271 - ORR1B1 LTR MaLR -22 372 17 4 632 271 305 108 54 chr1 6217347 6217458 -190977974 + PB1D10 SINE Alu 1 117 0 4 632 1068 78 21 0 chr1 6217501 6217643 -190977789 - B1_Mus1 SINE Alu -1 147 3 4 632 791 195 69 134 chr1 6218515 6218684 -190976748 - B3 SINE B2 0 216 47 4 632 1136 64 0 7 chr1 6218684 6218826 -190976606 + B1_Mus2 SINE Alu 2 142 -5 4 632 791 195 69 134 chr1 6218826 6218887 -190976545 - B3 SINE B2 -170 46 1 4 632 342 0 0 0 chr1 6218998 6219036 -190976396 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 632 490 304 69 31 chr1 6219141 6219402 -190976030 - B4A SINE B4 -19 273 3 4 632 601 225 65 30 chr1 6219471 6219615 -190975817 - B1F SINE Alu -2 147 5 4 632 243 0 0 0 chr1 6219872 6219899 -190975533 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 4 632 350 304 143 104 chr1 6220249 6220480 -190974952 + B4 SINE B4 53 292 0 4 632 816 224 35 27 chr1 6220539 6220732 -190974700 + B3 SINE B2 1 179 -16 4 632 24 0 0 0 chr1 6220732 6220756 -190974676 + AT_rich Low_complexity Low_complexity 1 24 0 4 632 285 251 50 25 chr1 6220808 6220917 -190974515 + B1_Mur2 SINE Alu 1 143 -6 4 632 230 0 33 0 chr1 6221133 6221163 -190974269 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 632 585 313 25 45 chr1 6221164 6221321 -190974111 - RSINE1 SINE B4 -4 161 8 4 632 343 164 18 0 chr1 6221682 6221737 -190973695 + B3 SINE B2 4 59 -157 4 632 459 52 0 0 chr1 6221765 6221823 -190973609 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 632 248 270 16 0 chr1 6221993 6222056 -190973376 + RMER15 LTR ERVL 392 455 -120 4 632 728 289 108 12 chr1 6222264 6222523 -190972909 + B4A SINE B4 1 284 -8 4 632 678 314 14 56 chr1 6222663 6222879 -190972553 - B4A SINE B4 -75 217 11 4 632 200 73 35 52 chr1 6222905 6222963 -190972469 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 4 632 1067 75 0 45 chr1 6222963 6223117 -190972315 - B1_Mus1 SINE Alu 0 148 2 4 632 1445 54 16 0 chr1 6223218 6223404 -190972028 - B2_Mm2 SINE B2 -6 189 1 4 632 1127 81 0 13 chr1 6223636 6223786 -190971646 + B1_Mus1 SINE Alu 1 148 0 4 632 213 65 0 0 chr1 6223786 6223817 -190971615 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 632 327 25 0 0 chr1 6223941 6223981 -190971451 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 632 608 314 42 26 chr1 6224770 6224960 -190970472 + B3A SINE B2 3 195 -3 4 632 22 0 0 0 chr1 6224961 6224983 -190970449 + AT_rich Low_complexity Low_complexity 1 22 0 4 632 509 204 37 129 chr1 6225554 6225682 -190969750 + B1_Mur4 SINE Alu 2 119 -31 4 632 1224 89 0 0 chr1 6225682 6225862 -190969570 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 632 509 204 37 129 chr1 6225862 6225896 -190969536 + B1_Mur4 SINE Alu 120 149 -1 4 632 753 162 233 39 chr1 6225967 6226147 -190969285 + B3 SINE B2 2 216 0 4 632 453 19 0 0 chr1 6226461 6226515 -190968917 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 632 674 182 25 0 chr1 6226523 6226644 -190968788 - B1_Mus1 SINE Alu -15 133 10 4 632 23 0 0 0 chr1 6226720 6226743 -190968689 + AT_rich Low_complexity Low_complexity 1 23 0 4 632 877 256 65 83 chr1 6226928 6227315 -190968117 - Lx8 LINE L1 -787 6686 6307 4 632 441 313 157 47 chr1 6227892 6228147 -190967285 + B4A SINE B4 10 292 0 4 632 183 100 0 0 chr1 6228658 6228688 -190966744 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 632 236 328 242 8 chr1 6228691 6228823 -190966609 - RSINE1 SINE B4 0 165 3 4 632 198 171 0 0 chr1 6229204 6229245 -190966187 + T-rich Low_complexity Low_complexity 3 43 0 4 632 27 0 0 0 chr1 6229674 6229701 -190965731 + AT_rich Low_complexity Low_complexity 1 27 0 4 632 329 272 74 46 chr1 6231421 6231529 -190963903 - B1F SINE Alu -34 115 5 4 632 445 76 0 0 chr1 6232015 6232081 -190963351 - L1Md_F2 LINE L1 -10 6572 6507 4 632 524 297 40 0 chr1 6232085 6232233 -190963199 - B3A SINE B2 -4 194 41 4 632 34 24 0 0 chr1 6232242 6232283 -190963149 + AT_rich Low_complexity Low_complexity 1 41 0 4 632 23 0 0 0 chr1 6232655 6232678 -190962754 + AT_rich Low_complexity Low_complexity 1 23 0 4 632 22 0 0 0 chr1 6232815 6232837 -190962595 + AT_rich Low_complexity Low_complexity 1 22 0 4 632 395 329 126 53 chr1 6233010 6233161 -190962271 + RSINE1 SINE B4 4 165 0 4 632 262 294 196 0 chr1 6233315 6233417 -190962015 + RSINE1 SINE B4 2 123 -42 4 632 257 312 26 43 chr1 6233690 6233807 -190961625 - PB1D10 SINE Alu -2 115 1 4 632 22 0 0 0 chr1 6235436 6235458 -190959974 + AT_rich Low_complexity Low_complexity 1 22 0 4 632 2689 218 116 22 chr1 6235877 6236636 -190958796 - Lx9 LINE L1 -57 7587 6758 4 632 1166 55 7 0 chr1 6236668 6236813 -190958619 - B1_Mm SINE Alu 0 147 2 4 632 555 179 54 45 chr1 6240410 6240521 -190954911 + B1F SINE Alu 1 112 -37 4 632 402 294 117 16 chr1 6240521 6240538 -190954894 + ID_B1 SINE B4 82 222 -2 4 632 185 0 40 0 chr1 6240788 6240813 -190954619 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 632 231 114 0 0 chr1 6240920 6240955 -190954477 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 632 843 302 106 69 chr1 6241091 6241514 -190953918 - MER31B LTR ERV1 -27 439 1 4 632 24 53 0 0 chr1 6241911 6241949 -190953483 + AT_rich Low_complexity Low_complexity 1 38 0 4 632 375 23 0 0 chr1 6242356 6242400 -190953032 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 632 236 195 60 150 chr1 6242542 6242584 -190952848 - BC1_Mm scRNA scRNA -23 129 89 4 632 1176 62 0 0 chr1 6242584 6242729 -190952703 - B1_Mus2 SINE Alu 0 147 3 4 632 283 195 60 150 chr1 6242729 6242819 -190952613 - ID4_ SINE ID -64 88 9 4 632 10452 33 2 0 chr1 6242853 6244799 -190950633 - L1Md_A LINE L1 0 6582 4633 4 632 494 322 14 95 chr1 6245049 6245279 -190950153 - B4A SINE B4 -75 217 2 4 632 413 183 103 2 chr1 6245455 6245557 -190949875 + ORR1D2 LTR MaLR 264 379 0 4 632 284 366 82 35 chr1 6245698 6245953 -190949479 - ERVL-E-int LTR ERVL -2493 3174 2908 4 632 1054 86 39 93 chr1 6245961 6246165 -190949267 + B2_Mm1t SINE B2 1 193 0 4 632 569 291 181 35 chr1 6246608 6247011 -190948421 + Tigger7 DNA MER2_type 2030 2491 0 4 632 234 282 150 26 chr1 6247011 6247124 -190948308 + Cheshire DNA MER1_type 176 302 -2118 4 632 6512 139 98 7 chr1 6249027 6250261 -190945171 - L1_Mur2 LINE L1 -970 4907 3561 4 632 1082 140 5 5 chr1 6250263 6250457 -190944975 + Lx2 LINE L1 6800 6993 -4 4 632 1292 102 11 0 chr1 6251261 6251448 -190943984 - B2_Mm1t SINE B2 -3 190 2 4 632 960 75 97 0 chr1 6251788 6251922 -190943510 + B1_Mus1 SINE Alu 2 148 0 4 632 189 0 0 0 chr1 6252092 6252113 -190943319 + (A)n Simple_repeat Simple_repeat 1 21 0 4 632 477 294 69 38 chr1 6253822 6253981 -190941451 + B4A SINE B4 123 286 -6 4 632 449 119 120 20 chr1 6254437 6254538 -190940894 - B1_Mus2 SINE Alu -15 105 1 4 632 325 279 136 52 chr1 6254538 6254588 -190940844 - ID_B1 SINE B4 -28 192 29 4 632 23 54 0 0 chr1 6254970 6255007 -190940425 + AT_rich Low_complexity Low_complexity 1 37 0 4 632 21 0 0 0 chr1 6255043 6255064 -190940368 + AT_rich Low_complexity Low_complexity 1 21 0 4 632 377 274 93 29 chr1 6255813 6255952 -190939480 - RSINE1 SINE B4 -15 150 3 4 632 318 234 208 0 chr1 6256088 6256233 -190939199 - B3A SINE B2 -6 210 15 4 632 284 64 0 21 chr1 6256239 6256287 -190939145 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 632 291 352 44 0 chr1 6256740 6256831 -190938601 - RSINE1 SINE B4 -14 151 57 4 632 2435 144 50 29 chr1 6256864 6257308 -190938124 - ORR1A2-int LTR MaLR -1510 453 1 4 632 2374 96 12 0 chr1 6257308 6257631 -190937801 - ORR1A2 LTR MaLR 0 327 1 4 632 802 154 44 7 chr1 6257687 6257824 -190937608 + B1_Mur2 SINE Alu 1 142 -7 4 632 358 286 9 18 chr1 6259381 6259495 -190935937 - PB1D10 SINE Alu -4 113 1 4 632 182 37 37 0 chr1 6259656 6259683 -190935749 + (ATAGG)n Simple_repeat Simple_repeat 4 31 0 4 632 1758 125 71 28 chr1 6260180 6260533 -190934899 - RLTR9A LTR ERVK 0 368 1 4 632 499 105 233 0 chr1 6261007 6261093 -190934339 + B2_Mm1t SINE B2 1 106 -87 5 632 29 28 0 0 chr1 6261159 6261195 -190934237 + AT_rich Low_complexity Low_complexity 1 36 0 5 632 239 205 0 0 chr1 6261657 6261696 -190933736 + B1_Mus2 SINE Alu 1 39 -108 5 632 322 336 22 22 chr1 6261931 6262068 -190933364 - ID_B1 SINE B4 -2 222 86 5 632 181 211 31 109 chr1 6262990 6263054 -190932378 - L2 LINE L2 -1771 1648 1590 5 632 251 302 33 44 chr1 6263190 6263272 -190932160 + B1F2 SINE Alu 1 81 -68 5 632 409 333 8 8 chr1 6263272 6263399 -190932033 + B1F2 SINE Alu 3 129 -20 5 632 5677 8 0 0 chr1 6263576 6264263 -190931169 - L1Md_T LINE L1 0 6582 5948 5 632 228 273 0 0 chr1 6264263 6264276 -190931156 + polypyrimidine Low_complexity Low_complexity 4 16 0 5 632 198 0 0 0 chr1 6264455 6264477 -190930955 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 632 22 35 0 0 chr1 6266421 6266450 -190928982 + AT_rich Low_complexity Low_complexity 1 29 0 5 632 228 277 0 0 chr1 6266453 6266500 -190928932 + B1F SINE Alu 13 59 -90 5 632 730 197 56 0 chr1 6266665 6266807 -190928625 - B1_Mur4 SINE Alu 0 150 1 5 632 482 219 125 31 chr1 6266989 6267149 -190928283 - ORR1D2 LTR MaLR -5 365 191 5 632 1078 212 205 49 chr1 6267184 6267482 -190927950 - MTD-int LTR MaLR -797 461 107 5 632 1213 143 247 44 chr1 6267482 6267753 -190927679 - ORR1A3 LTR MaLR 0 326 1 5 632 1078 212 205 49 chr1 6267753 6267845 -190927587 - MTD-int LTR MaLR -1152 106 10 5 632 1439 207 173 3 chr1 6267856 6268186 -190927246 - MTD LTR MaLR -14 405 20 5 632 269 206 137 0 chr1 6268540 6268642 -190926790 - L1M2 LINE L1 -1992 4151 4036 5 632 293 302 37 19 chr1 6268966 6269074 -190926358 - MLT1H-int LTR MaLR -1206 203 94 5 632 249 225 97 14 chr1 6269533 6269605 -190925827 + ID4 SINE ID 4 81 -2 5 632 344 341 81 89 chr1 6271253 6271501 -190923931 - ORR1E LTR MaLR -103 256 11 5 632 719 237 95 38 chr1 6271763 6272026 -190923406 - RLTR12B LTR ERVK -13 515 238 5 632 21 0 0 0 chr1 6272205 6272226 -190923206 + AT_rich Low_complexity Low_complexity 1 21 0 5 632 266 364 23 0 chr1 6272491 6272579 -190922853 + B1F1 SINE Alu 1 90 -59 5 632 1562 129 33 63 chr1 6272631 6272963 -190922469 + RLTRETN_Mm LTR ERVK 1 322 0 5 632 626 259 53 161 chr1 6272963 6273267 -190922165 + B4A SINE B4 4 274 -18 5 632 779 251 33 24 chr1 6274339 6274551 -190920881 + ID_B1 SINE B4 5 218 -6 5 632 39 38 0 0 chr1 6274584 6274637 -190920795 + AT_rich Low_complexity Low_complexity 1 53 0 5 632 232 331 106 111 chr1 6275174 6275354 -190920078 - ORR1E LTR MaLR 0 359 181 5 632 294 304 43 0 chr1 6275608 6275677 -190919755 - PB1D10 SINE Alu -27 90 19 5 632 682 325 5 39 chr1 6275692 6275726 -190919706 - B3A SINE B2 0 198 171 5 632 414 0 0 0 chr1 6275726 6275772 -190919660 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 632 682 325 5 39 chr1 6275772 6275942 -190919490 - B3A SINE B2 -28 170 1 5 632 558 254 54 47 chr1 6276460 6276609 -190918823 - RSINE1 SINE B4 -5 160 11 5 632 276 77 0 0 chr1 6276624 6276663 -190918769 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 632 304 355 59 36 chr1 6278617 6278839 -190916593 + MIR SINE MIR 2 228 -34 5 632 327 309 54 47 chr1 6279450 6279579 -190915853 - ORR1D2 LTR MaLR -184 175 46 5 632 230 360 13 32 chr1 6280323 6280481 -190914951 + L1MD LINE L1 2596 2750 -3396 5 632 2191 234 118 20 chr1 6280494 6281096 -190914336 - Lx6 LINE L1 -42 7418 6758 5 632 241 174 65 16 chr1 6281096 6281219 -190914213 + (TA)n Simple_repeat Simple_repeat 1 129 0 5 632 474 75 0 0 chr1 6281241 6281308 -190914124 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 632 405 283 0 0 chr1 6281315 6281421 -190914011 - Lx6 LINE L1 -724 6736 6631 5 632 280 238 82 0 chr1 6281404 6281526 -190913906 + L1MD LINE L1 2737 2868 -3278 5 632 1022 320 74 14 chr1 6281624 6281991 -190913441 + MER88 LTR ERVL 71 459 -5 5 632 491 252 63 22 chr1 6282004 6282349 -190913083 + L1MD LINE L1 2900 3492 -2654 5 632 1318 82 33 0 chr1 6282623 6282807 -190912625 - B2_Mm1a SINE B2 -3 190 1 5 632 1288 198 162 14 chr1 6282836 6283195 -190912237 - RLTR22_Mur LTR ERVK -962 886 475 5 632 492 62 0 0 chr1 6283236 6283301 -190912131 - MTB LTR MaLR 0 346 282 5 632 441 0 0 0 chr1 6283297 6283347 -190912085 - MT2_Mm LTR ERVL -228 265 216 5 632 464 86 29 0 chr1 6283334 6283404 -190912028 - ORR1A0 LTR MaLR -274 72 1 5 632 932 127 67 0 chr1 6283404 6283569 -190911863 - Lx2 LINE L1 -41 6956 6781 5 632 3781 143 72 10 chr1 6283564 6284269 -190911163 - Lx2 LINE L1 -358 6639 5891 5 632 1180 97 0 17 chr1 6284267 6284446 -190910986 - MusHAL1 LINE L1 -1570 1142 967 5 632 1082 84 0 0 chr1 6284446 6284589 -190910843 - MTB LTR MaLR -255 145 3 5 632 554 107 0 0 chr1 6284591 6284675 -190910757 + Lx7 LINE L1 3718 3801 -2079 5 632 1132 85 0 0 chr1 6284680 6284821 -190910611 - B1_Mus1 SINE Alu -5 143 3 5 632 1696 190 118 16 chr1 6284836 6285285 -190910147 + Lx7 LINE L1 4819 5313 -567 5 632 2471 230 113 15 chr1 6285294 6286164 -190909268 + Lx7 LINE L1 5427 6344 -1352 5 632 30515 83 7 3 chr1 6286179 6290996 -190904436 + L1Md_A LINE L1 742 5586 -297 5 632 1731 254 22 2 chr1 6290979 6290998 -190904434 + Lx7 LINE L1 6303 6321 -1375 5 9 6961 85 27 9 chr1 6290998 6291975 -190903457 + L1Md_F2 LINE L1 5589 6582 0 5 633 1731 254 22 2 chr1 6291975 6292370 -190903062 + Lx7 LINE L1 6322 6725 -971 5 633 2193 185 15 3 chr1 6292375 6292766 -190902666 - MTB_Mm LTR MaLR -2 405 10 5 633 2496 213 46 22 chr1 6292769 6292799 -190902633 + Lx7 LINE L1 6727 6753 -943 5 633 1293 151 0 78 chr1 6292799 6293044 -190902388 - URR1A DNA MER1_type 0 226 1 5 633 2496 213 46 22 chr1 6293044 6293601 -190901831 + Lx7 LINE L1 6754 7329 -367 5 633 191 36 36 0 chr1 6293601 6293629 -190901803 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 5 633 2496 213 46 22 chr1 6293629 6293669 -190901763 + Lx7 LINE L1 7330 7370 -326 5 633 378 0 0 0 chr1 6293670 6293712 -190901720 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 633 963 154 28 45 chr1 6293778 6293955 -190901477 - MTC LTR MaLR -8 413 240 5 633 947 82 7 7 chr1 6293955 6294102 -190901330 + L1_Mus4 LINE L1 6480 6626 -10 5 633 426 305 101 42 chr1 6294119 6294496 -190900936 + L1MD LINE L1 4367 4765 -1381 5 633 275 279 166 33 chr1 6294835 6295006 -190900426 + L1MD LINE L1 5165 5369 -777 5 633 1588 161 153 14 chr1 6295006 6295181 -190900251 + RMER17C LTR ERVK 1 212 -198 5 633 1046 74 0 7 chr1 6295181 6295331 -190900101 + (TC)n Simple_repeat Simple_repeat 2 150 0 5 633 1588 161 153 14 chr1 6295331 6295515 -190899917 + RMER17C LTR ERVK 213 409 -1 5 633 275 284 117 38 chr1 6295515 6295689 -190899743 + L1MD LINE L1 5370 5557 -802 5 633 225 234 82 31 chr1 6295721 6295818 -190899614 + L1M4 LINE L1 5613 5714 -460 5 633 940 254 50 34 chr1 6295955 6296253 -190899179 + RLTR11A2 LTR ERVK 1 303 -224 5 633 213 178 0 0 chr1 6297719 6297764 -190897668 + CT-rich Low_complexity Low_complexity 2 46 0 5 633 787 268 34 5 chr1 6297774 6297980 -190897452 - B3 SINE B2 -3 213 2 5 633 631 279 12 0 chr1 6297986 6298151 -190897281 + Lx8 LINE L1 6852 7018 -455 5 633 1064 98 24 0 chr1 6298151 6298315 -190897117 + L1_Mus3 LINE L1 6459 6626 -12 5 633 402 240 29 0 chr1 6298340 6298444 -190896988 + Lx7 LINE L1 6990 7096 -600 5 633 397 233 52 37 chr1 6298462 6298596 -190896836 + Lx8 LINE L1 7110 7245 -228 5 633 1979 197 19 8 chr1 6298637 6299010 -190896422 - RLTR14 LTR ERV1 -3 379 3 5 633 1613 201 88 25 chr1 6299218 6299571 -190895861 - ORR1C1 LTR MaLR -3 375 1 5 633 595 265 64 62 chr1 6299626 6299984 -190895448 - RLTR10D LTR ERVK 0 359 1 5 633 551 252 25 10 chr1 6300006 6300210 -190895222 + L1_Rod LINE L1 2246 2458 -3422 5 633 1996 51 11 0 chr1 6300474 6300747 -190894685 - L1_Mm LINE L1 -433 5450 5175 5 633 3307 83 39 2 chr1 6300747 6301205 -190894227 + L1Md_F2 LINE L1 6106 6580 -2 5 633 483 294 42 64 chr1 6301472 6301832 -190893600 + L1MA4 LINE L1 5365 5716 -575 5 633 1041 216 19 5 chr1 6301865 6302079 -190893353 + ORR1C1 LTR MaLR 1 217 -161 5 633 561 165 0 0 chr1 6302076 6302167 -190893265 + ORR1C1-int LTR MaLR 1280 1370 0 5 633 841 208 40 23 chr1 6302167 6302344 -190893088 + ORR1C1 LTR MaLR 1 180 -198 5 633 538 203 0 15 chr1 6302344 6302479 -190892953 + CT-rich Low_complexity Low_complexity 3 135 0 5 633 622 176 255 12 chr1 6302483 6302644 -190892788 + ORR1C1 LTR MaLR 175 374 -10 5 633 477 225 5 31 chr1 6302645 6302828 -190892604 + L1MA4 LINE L1 5748 5918 -238 5 633 504 0 0 0 chr1 6302869 6302925 -190892507 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 633 28041 109 9 14 chr1 6303943 6309275 -190886157 - L1_Mus2 LINE L1 0 6566 1265 5 633 206 32 32 0 chr1 6309275 6309306 -190886126 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 633 28041 178 49 76 chr1 6309306 6310058 -190885374 - L1_Mus2 LINE L1 -4619 1264 537 5 633 222 37 0 0 chr1 6310081 6310108 -190885324 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 633 26 30 0 0 chr1 6311041 6311074 -190884358 + AT_rich Low_complexity Low_complexity 1 33 0 5 633 192 40 0 0 chr1 6311135 6311160 -190884272 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 633 2124 161 108 3 chr1 6311811 6312192 -190883240 + MTC LTR MaLR 1 421 0 5 633 316 310 15 15 chr1 6312500 6312631 -190882801 + CT-rich Low_complexity Low_complexity 2 132 0 5 633 333 292 59 50 chr1 6312651 6312770 -190882662 - PB1D7 SINE Alu 0 120 1 5 633 449 152 35 35 chr1 6313697 6313821 -190881611 + RLTR15 LTR ERVK 1 189 -170 5 633 774 151 337 5 chr1 6313814 6314028 -190881404 - ORR1C1 LTR MaLR -93 285 1 5 633 205 152 0 0 chr1 6314179 6314212 -190881220 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 633 416 328 28 12 chr1 6314570 6314817 -190880615 - L1MC3 LINE L1 -82 7703 7453 5 633 368 304 0 38 chr1 6314885 6314991 -190880441 + RSINE1 SINE B4 3 104 -61 5 633 769 312 107 31 chr1 6314992 6315388 -190880044 - L1MC3 LINE L1 -759 7026 6612 5 633 3480 20 0 8 chr1 6315388 6315787 -190879645 - MTA_Mm LTR MaLR 0 396 1 5 633 9379 27 1 2 chr1 6315787 6316886 -190878546 - MTA_Mm-int LTR MaLR 0 1098 1 5 633 3477 23 2 0 chr1 6316886 6317281 -190878151 - MTA_Mm LTR MaLR 0 396 1 5 633 769 312 107 31 chr1 6317281 6317583 -190877849 - L1MC3 LINE L1 -1174 6611 6275 5 633 924 59 0 0 chr1 6318093 6318212 -190877220 + (TCTCCC)n Simple_repeat Simple_repeat 6 124 0 5 633 271 188 60 45 chr1 6318216 6318283 -190877149 - B4 SINE B4 -219 73 6 5 633 290 309 93 0 chr1 6318336 6318433 -190876999 - PB1D10 SINE Alu 0 117 12 5 633 224 362 0 0 chr1 6318387 6318445 -190876987 - B4A SINE B4 -150 142 85 5 633 375 333 33 58 chr1 6318445 6318687 -190876745 - L1MD LINE L1 -902 5244 5009 5 633 494 289 45 0 chr1 6319082 6319238 -190876194 - MER2 DNA MER2_type -1 344 182 5 633 252 0 0 0 chr1 6319325 6319353 -190876079 + (T)n Simple_repeat Simple_repeat 1 28 0 5 633 207 0 0 0 chr1 6319583 6319606 -190875826 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 633 1982 280 77 20 chr1 6319606 6320310 -190875122 - Lx8 LINE L1 -146 7327 6584 5 633 240 35 0 0 chr1 6320390 6320419 -190875013 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 633 238 338 59 44 chr1 6320945 6321081 -190874351 - Tigger7 DNA MER2_type 0 2491 2354 6 633 445 296 57 0 chr1 6321076 6321252 -190874180 - Tigger7 DNA MER2_type -79 2412 2229 6 633 10850 96 45 8 chr1 6321808 6322674 -190872758 - L1VL2 LINE L1 -627 2988 2078 6 633 369 0 0 0 chr1 6322674 6322715 -190872717 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 6 633 10850 96 45 8 chr1 6322715 6323001 -190872431 - L1VL2 LINE L1 -1538 2077 1788 6 633 180 0 0 0 chr1 6323001 6323021 -190872411 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 6 633 10850 96 45 8 chr1 6323021 6323702 -190871730 - L1VL2 LINE L1 -1828 1787 1088 6 633 255 61 0 0 chr1 6323702 6323735 -190871697 + (T)n Simple_repeat Simple_repeat 1 33 0 6 633 32891 75 1 3 chr1 6323801 6330203 -190865229 - L1Md_F2 LINE L1 -1 6581 193 6 633 5527 101 0 9 chr1 6330202 6331121 -190864311 - L1VL2 LINE L1 -2516 1099 191 6 633 572 292 47 6 chr1 6331230 6331402 -190864030 - Tigger7 DNA MER2_type -2302 189 11 6 633 207 0 0 0 chr1 6331907 6331930 -190863502 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 633 450 329 101 0 chr1 6332380 6332529 -190862903 - RSINE1 SINE B4 0 165 2 6 633 1677 165 54 95 chr1 6332552 6332921 -190862511 - ORR1B1 LTR MaLR 0 394 41 6 633 613 262 0 0 chr1 6333325 6333451 -190861981 + ID_B1 SINE B4 93 218 -6 6 633 368 155 14 0 chr1 6333688 6333759 -190861673 + GA-rich Low_complexity Low_complexity 3 74 0 6 633 587 215 123 0 chr1 6334516 6334646 -190860786 + B1_Mur1 SINE Alu 3 148 -1 6 633 297 75 0 0 chr1 6335142 6335182 -190860250 + (TTA)n Simple_repeat Simple_repeat 2 41 0 6 633 7212 103 32 18 chr1 6335182 6337119 -190858313 - L1Md_F2 LINE L1 -9 6988 4988 6 633 297 269 0 0 chr1 6337142 6337194 -190858238 + RSINE1 SINE B4 29 80 -85 6 633 1502 66 5 16 chr1 6337194 6337380 -190858052 - B2_Mm1t SINE B2 -9 184 1 6 633 5380 78 45 1 chr1 6337385 6338121 -190857311 - L1_Mm LINE L1 -885 4998 4231 6 633 1178 134 0 6 chr1 6338120 6338292 -190857140 - Lx LINE L1 -371 6283 6113 6 633 582 113 8 0 chr1 6338291 6338383 -190857049 + L1_Mm LINE L1 5384 5493 -390 6 633 369 194 0 14 chr1 6338719 6338792 -190856640 + ORR1C2 LTR MaLR 313 384 0 6 633 517 214 0 0 chr1 6338796 6338894 -190856538 + ORR1C2-int LTR MaLR 5 102 -1268 6 633 273 20 60 20 chr1 6338900 6338950 -190856482 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 6 633 1262 48 0 7 chr1 6338954 6339100 -190856332 - B1_Mus1 SINE Alu -2 146 2 6 633 1667 228 70 18 chr1 6339100 6339647 -190855785 + ORR1C2-int LTR MaLR 96 711 -659 6 633 1217 250 61 19 chr1 6339804 6340031 -190855401 + RLTR16 LTR ERVK 171 412 -93 6 633 318 26 0 0 chr1 6340031 6340070 -190855362 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 633 1217 250 61 19 chr1 6340070 6340152 -190855280 + RLTR16 LTR ERVK 413 493 -12 6 633 555 257 109 77 chr1 6340206 6340480 -190854952 + RLTR21 LTR ERVK 1288 1570 -2 6 633 2907 165 135 55 chr1 6340949 6341571 -190853861 + RMER19B LTR ERVK 231 902 0 6 633 1026 269 102 14 chr1 6341891 6342185 -190853247 + Lx5 LINE L1 6720 7039 -11 6 633 1528 212 117 5 chr1 6342431 6342806 -190852626 - MTD LTR MaLR 0 419 3 6 633 1771 283 23 11 chr1 6342810 6343281 -190852151 + Lx8 LINE L1 6472 6948 -525 6 633 8444 45 5 1 chr1 6343278 6344307 -190851125 - L1Md_F2 LINE L1 0 6582 5579 6 633 616 283 60 0 chr1 6344314 6344480 -190850952 + Lx8 LINE L1 6967 7142 -331 6 633 575 196 26 0 chr1 6344533 6344686 -190850746 + CT-rich Low_complexity Low_complexity 2 158 0 6 633 594 254 104 33 chr1 6344686 6344898 -190850534 + Lx8 LINE L1 7246 7472 -1 6 633 300 329 0 0 chr1 6344945 6345027 -190850405 + ID4 SINE ID 2 83 0 6 633 258 32 0 0 chr1 6345031 6345062 -190850370 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 633 361 333 19 0 chr1 6345548 6345653 -190849779 + PB1D10 SINE Alu 10 116 -1 6 633 339 119 0 0 chr1 6345655 6345714 -190849718 - RLTR21 LTR ERVK -946 626 568 6 633 1191 156 123 5 chr1 6345690 6345902 -190849530 - RLTR21 LTR ERVK -1290 282 46 6 633 1890 79 20 12 chr1 6345999 6346254 -190849178 - L1_Mus2 LINE L1 -3 6563 6307 6 633 1028 115 60 0 chr1 6346255 6346318 -190849114 + RLTR21 LTR ERVK 881 944 -628 6 633 410 0 20 0 chr1 6346318 6346368 -190849064 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 6 633 1028 115 60 0 chr1 6346368 6346487 -190848945 + RLTR21 LTR ERVK 945 1072 -500 6 633 402 269 42 8 chr1 6346605 6346725 -190848707 + B1F2 SINE Alu 24 147 -2 6 633 1613 187 48 149 chr1 6346756 6347171 -190848261 - ORR1D1 LTR MaLR -1 373 1 6 633 1218 235 48 17 chr1 6347408 6347702 -190847730 + Lx6 LINE L1 7157 7459 -1 6 633 522 0 0 0 chr1 6347714 6347772 -190847660 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 633 899 26 9 0 chr1 6348667 6348781 -190846651 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 6 633 241 254 14 40 chr1 6350448 6350522 -190844910 + CT-rich Low_complexity Low_complexity 3 74 0 6 633 519 31 0 0 chr1 6350665 6350730 -190844702 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 633 469 271 61 15 chr1 6350736 6350867 -190844565 - B1F SINE Alu 0 149 13 6 633 261 242 63 16 chr1 6351398 6351461 -190843971 + ID4_ SINE ID 7 72 -11 6 633 801 297 47 40 chr1 6352075 6352373 -190843059 - MER21B LTR ERV1 -51 812 513 6 633 345 307 152 73 chr1 6352544 6352695 -190842737 - MER21B LTR ERV1 -700 163 1 6 633 194 239 42 56 chr1 6352765 6352836 -190842596 - L2b LINE L2 -292 3083 3014 6 633 336 355 22 27 chr1 6354007 6354192 -190841240 - MER21B LTR ERV1 -11 852 669 6 633 358 164 0 0 chr1 6354649 6354710 -190840722 + ORR1A3 LTR MaLR 32 92 -235 6 633 195 42 0 0 chr1 6354731 6354755 -190840677 + (T)n Simple_repeat Simple_repeat 1 24 0 6 633 2857 55 23 14 chr1 6354785 6355136 -190840296 - L1Md_F3 LINE L1 -2 6582 6229 6 633 858 67 0 0 chr1 6355142 6355247 -190840185 - L1_Mm LINE L1 -896 4987 4883 6 633 3183 89 12 0 chr1 6355249 6355654 -190839778 - L1_Mus1 LINE L1 -14 6553 6144 6 633 16143 75 10 1 chr1 6355654 6357782 -190837650 - L1_Mm LINE L1 -641 5242 3095 6 633 5396 76 2 14 chr1 6357780 6358408 -190837024 - L1VL1 LINE L1 -2326 1372 760 6 633 1455 45 102 0 chr1 6358408 6358425 -190837007 - B2_Mm2 SINE B2 0 195 179 6 633 216 0 0 0 chr1 6358425 6358449 -190836983 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 6 633 1455 45 102 0 chr1 6358449 6358607 -190836825 - B2_Mm2 SINE B2 -17 178 3 6 633 5396 57 3 22 chr1 6358607 6358942 -190836490 - L1VL1 LINE L1 -5663 759 423 6 633 627 162 0 0 chr1 6358938 6359037 -190836395 - L1VL1 LINE L1 -6131 291 193 6 633 1351 169 12 44 chr1 6359039 6359287 -190836145 + ORR1A3 LTR MaLR 79 318 -8 6 633 327 241 0 24 chr1 6359370 6359455 -190835977 - MER21B LTR ERV1 -325 538 456 6 633 443 324 117 0 chr1 6359659 6359838 -190835594 - MER21B LTR ERV1 -663 200 1 6 633 22 0 0 0 chr1 6359889 6359911 -190835521 + AT_rich Low_complexity Low_complexity 1 22 0 6 633 551 252 8 17 chr1 6360128 6360245 -190835187 - PB1D10 SINE Alu -1 116 1 6 633 274 269 103 0 chr1 6360178 6360256 -190835176 - B4 SINE B4 -137 155 70 6 633 680 297 52 0 chr1 6360820 6360975 -190834457 - RSINE1 SINE B4 0 165 3 6 633 796 269 5 25 chr1 6361217 6361415 -190834017 + B3 SINE B2 1 194 -22 6 633 441 0 0 0 chr1 6361415 6361464 -190833968 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 633 285 253 179 42 chr1 6361524 6361619 -190833813 + B4 SINE B4 9 116 -176 6 633 1875 103 55 35 chr1 6362106 6362418 -190833014 - ORR1A3 LTR MaLR -8 318 1 6 633 927 109 0 0 chr1 6363963 6364101 -190831331 + (TC)n Simple_repeat Simple_repeat 1 138 0 6 633 7983 144 23 9 chr1 6364835 6366789 -190828643 - Lx3C LINE L1 -1 6975 4991 6 633 1630 173 8 9 chr1 6366787 6367158 -190828274 - MusHAL1 LINE L1 -2297 3589 3240 6 633 7055 91 31 8 chr1 6367159 6367477 -190827955 + Lx3_Mus LINE L1 6039 6370 -639 6 633 2417 144 17 29 chr1 6367477 6367891 -190827541 - RLTR9E LTR ERVK 0 409 1 6 633 7055 91 31 8 chr1 6367891 6368521 -190826911 + Lx3_Mus LINE L1 6371 7008 -1 6 633 4217 126 62 6 chr1 6368536 6369212 -190826220 - RLTR21 LTR ERVK -858 714 1 6 633 235 212 143 133 chr1 6369251 6369349 -190826083 - ORR1D1 LTR MaLR 0 374 276 6 633 198 91 0 0 chr1 6372626 6372659 -190822773 + (A)n Simple_repeat Simple_repeat 1 33 0 6 633 21 0 0 0 chr1 6372922 6372943 -190822489 + GC_rich Low_complexity Low_complexity 1 21 0 6 633 24 32 0 0 chr1 6373286 6373317 -190822115 + GC_rich Low_complexity Low_complexity 1 31 0 6 633 445 271 142 84 chr1 6373317 6373684 -190821748 + L1MC3 LINE L1 6640 7027 -758 6 633 421 283 136 12 chr1 6373773 6374016 -190821416 + L1MC3 LINE L1 7189 7461 -324 6 633 276 310 101 50 chr1 6374038 6374157 -190821275 + B1F SINE Alu 23 147 -2 6 633 25 31 0 0 chr1 6374421 6374453 -190820979 + AT_rich Low_complexity Low_complexity 1 32 0 6 633 1205 219 0 0 chr1 6374461 6374666 -190820766 + B3 SINE B2 2 206 -10 6 633 903 314 93 39 chr1 6375227 6375667 -190819765 + MLT1C LTR MaLR 4 467 0 6 633 990 291 66 12 chr1 6375678 6375998 -190819434 - MER2 DNA MER2_type -8 337 1 6 633 1514 141 20 12 chr1 6376453 6376705 -190818727 - Lx LINE L1 -6 6648 6395 6 633 398 379 48 35 chr1 6376723 6376950 -190818482 - B4A SINE B4 -47 245 16 6 633 594 310 26 6 chr1 6377293 6377449 -190817983 + RSINE1 SINE B4 3 161 -4 6 633 1995 174 34 11 chr1 6377971 6378326 -190817106 - ORR1B2 LTR MaLR 0 367 5 6 633 1592 152 97 39 chr1 6378938 6379247 -190816185 - ORR1B1 LTR MaLR -8 386 60 6 633 207 0 0 0 chr1 6380282 6380305 -190815127 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 633 1660 213 107 0 chr1 6380370 6380736 -190814696 - MTD LTR MaLR 0 419 15 6 633 324 64 0 0 chr1 6380745 6380792 -190814640 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 633 315 0 0 0 chr1 6381208 6381243 -190814189 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 633 257 260 13 52 chr1 6381327 6381404 -190814028 - ID4 SINE ID -9 74 1 6 633 230 286 78 67 chr1 6381448 6381538 -190813894 + PB1D10 SINE Alu 27 117 0 6 633 238 271 21 0 chr1 6381973 6382021 -190813411 + B4A SINE B4 93 141 -151 6 633 237 255 240 21 chr1 6382021 6382062 -190813370 + PB1D10 SINE Alu 16 117 0 6 633 2129 114 112 14 chr1 6382237 6382585 -190812847 + RLTR13B1 LTR ERVK 1 382 -511 6 633 722 192 247 11 chr1 6382596 6382770 -190812662 - B3 SINE B2 0 216 2 6 633 1267 35 7 0 chr1 6384048 6384190 -190811242 + B1_Mus2 SINE Alu 5 147 0 6 633 213 39 0 0 chr1 6384229 6384255 -190811177 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 7 633 25 65 0 0 chr1 6384719 6384765 -190810667 + AT_rich Low_complexity Low_complexity 1 46 0 7 633 338 246 24 88 chr1 6385221 6385346 -190810086 - PB1D7 SINE Alu -3 117 1 7 633 258 222 0 0 chr1 6385659 6385713 -190809719 + PB1D10 SINE Alu 46 99 -18 7 633 532 293 98 16 chr1 6385715 6385899 -190809533 - MTD LTR MaLR 0 419 221 7 633 494 103 13 0 chr1 6385899 6385977 -190809455 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 633 657 265 98 44 chr1 6385983 6386188 -190809244 - B3 SINE B2 0 216 1 7 633 408 232 189 19 chr1 6386194 6386369 -190809063 - MTD LTR MaLR -219 202 2 7 633 2516 167 68 11 chr1 6387158 6387630 -190807802 - RLTR17 LTR ERVK -193 499 1 7 633 888 247 138 14 chr1 6387940 6388238 -190807194 + MTD LTR MaLR 52 400 0 7 633 194 294 168 0 chr1 6388761 6388880 -190806552 - MIR SINE MIR -32 230 92 7 633 1071 69 0 0 chr1 6389055 6389186 -190806246 - B1_Mm SINE Alu -15 132 2 7 633 591 270 0 13 chr1 6389205 6389355 -190806077 + B1_Mur2 SINE Alu 1 148 -1 7 633 234 247 36 24 chr1 6389373 6389456 -190805976 + B4 SINE B4 2 85 -207 7 633 484 120 0 51 chr1 6390045 6390124 -190805308 - Lx9 LINE L1 -736 6908 6834 7 633 584 207 143 0 chr1 6390121 6390261 -190805171 + Lx9 LINE L1 6895 7054 -590 7 633 218 312 139 52 chr1 6390320 6390435 -190804997 + MIR SINE MIR 3 127 -135 7 633 479 246 140 7 chr1 6390702 6390845 -190804587 + B3A SINE B2 2 163 -35 7 633 981 95 6 12 chr1 6390919 6391079 -190804353 - RMER17B LTR ERVK -204 754 596 7 633 908 50 0 0 chr1 6391080 6391200 -190804232 - B1_Mm SINE Alu -19 128 9 7 633 3662 80 9 0 chr1 6391198 6391723 -190803709 - RMER17B LTR ERVK -428 530 1 7 633 317 336 28 9 chr1 6392147 6392255 -190803177 - PB1 SINE Alu -7 120 11 7 633 368 252 29 10 chr1 6392735 6392839 -190802593 - PB1D10 SINE Alu -2 115 10 7 633 360 355 29 0 chr1 6392920 6393058 -190802374 + RSINE1 SINE B4 3 144 -21 7 633 294 203 171 44 chr1 6393247 6393412 -190802020 + LTR23-int LTR ERV1 4497 4565 -558 7 633 312 287 0 33 chr1 6393504 6393594 -190801838 - PB1D7 SINE Alu 0 120 34 7 633 652 304 65 21 chr1 6394045 6394431 -190801001 + MER31A LTR ERV1 39 441 -44 7 633 1376 247 54 65 chr1 6394434 6394953 -190800479 + RMER5 LTR ERV1 15 527 -7 7 633 2438 65 19 3 chr1 6394972 6395294 -190800138 + IAPLTR2b LTR ERVK 1 327 0 7 633 206 171 49 0 chr1 6396793 6396834 -190798598 - MER5A DNA MER1_type 0 189 147 7 633 362 287 11 0 chr1 6397779 6397870 -190797562 + ORR1D2 LTR MaLR 1 92 -282 7 633 425 83 0 0 chr1 6397870 6397930 -190797502 - MTA_Mm LTR MaLR 0 400 341 7 633 885 17 9 0 chr1 6397927 6398042 -190797390 + B1_Mus1 SINE Alu 33 148 0 7 633 2649 41 19 0 chr1 6398042 6398404 -190797028 - MTA_Mm LTR MaLR -27 369 1 7 633 527 272 61 0 chr1 6398404 6398550 -190796882 + ORR1D2 LTR MaLR 89 243 -127 7 633 311 233 120 0 chr1 6398726 6398859 -190796573 - L1MB4 LINE L1 0 6180 6032 7 633 2076 164 19 16 chr1 6399164 6399530 -190795902 - ORR1B2 LTR MaLR 0 367 1 7 633 283 189 152 43 chr1 6399556 6399694 -190795738 - L1M4 LINE L1 -5312 1295 1143 7 633 1276 252 98 0 chr1 6399746 6400083 -190795349 + ORR1D2 LTR MaLR 1 370 0 7 633 871 228 66 0 chr1 6400286 6400483 -190794949 - B3 SINE B2 -6 210 1 7 633 189 0 0 0 chr1 6400490 6400511 -190794921 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 7 633 2049 112 6 9 chr1 6401635 6401951 -190793481 - Lx2 LINE L1 -2 6995 6681 7 633 567 259 0 0 chr1 6402972 6403103 -190792329 + ORR1D2 LTR MaLR 1 131 -239 7 633 4212 171 64 20 chr1 6403109 6403973 -190791459 + RMER19B LTR ERVK 1 902 0 7 633 1757 310 76 82 chr1 6403977 6405055 -190790377 + Lx5 LINE L1 5979 7050 0 7 633 271 356 23 0 chr1 6405080 6405167 -190790265 + ORR1D2 LTR MaLR 93 181 -189 7 633 603 60 0 0 chr1 6405169 6405253 -190790179 + (TC)n Simple_repeat Simple_repeat 2 85 0 7 633 207 0 0 0 chr1 6405253 6405275 -190790157 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 633 1083 314 41 81 chr1 6405304 6405813 -190789619 - Lx8 LINE L1 -238 7235 6747 7 633 1373 171 111 92 chr1 6405813 6406293 -190789139 + BGLII_B LTR ERVK 1 436 -5 7 633 981 276 124 0 chr1 6406442 6406725 -190788707 - Lx8 LINE L1 -717 6756 6439 7 633 1002 269 68 54 chr1 6407358 6407767 -190787665 + MTD LTR MaLR 1 415 -4 7 633 27 49 0 0 chr1 6407860 6407901 -190787531 + AT_rich Low_complexity Low_complexity 1 41 0 7 633 282 29 0 0 chr1 6408493 6408528 -190786904 + (TATG)n Simple_repeat Simple_repeat 2 36 0 7 633 692 160 33 5 chr1 6409257 6409471 -190785961 + CT-rich Low_complexity Low_complexity 1 220 0 7 633 403 167 15 0 chr1 6409471 6409537 -190785895 + polypyrimidine Low_complexity Low_complexity 3 69 0 7 633 763 165 14 28 chr1 6409537 6409680 -190785752 - B1_Mus1 SINE Alu 0 148 8 7 633 1406 142 0 0 chr1 6409723 6409942 -190785490 - Lx2 LINE L1 -1 6996 6778 7 633 24653 130 45 6 chr1 6409944 6411183 -190784249 - Lx2 LINE L1 -353 6644 5368 7 633 719 60 20 0 chr1 6411183 6411283 -190784149 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 7 633 1020 94 14 0 chr1 6411285 6411423 -190784009 - B1_Mus1 SINE Alu -6 142 3 7 633 24653 168 21 18 chr1 6411423 6413853 -190781579 - Lx2 LINE L1 -516 5367 2925 7 633 4245 53 2 6 chr1 6413853 6414367 -190781065 - RLTR1B LTR ERV1 0 512 1 7 633 24653 156 21 41 chr1 6414367 6416997 -190778435 - Lx2 LINE L1 -2959 2924 356 7 633 234 0 0 0 chr1 6417172 6417198 -190778234 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 633 1623 31 0 21 chr1 6417242 6417436 -190777996 - B2_Mm1t SINE B2 -3 190 1 7 633 250 282 11 34 chr1 6417937 6418025 -190777407 - MER5A DNA MER1_type -103 86 1 7 633 348 161 0 0 chr1 6419142 6419204 -190776228 + T-rich Low_complexity Low_complexity 1 62 0 7 633 3028 18 0 0 chr1 6420461 6420798 -190774634 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 79 56723 22 14 7 chr1 6420798 6427229 -190768203 - IAPEz-int LTR ERVK 0 6481 8 7 634 3028 18 0 0 chr1 6427229 6427566 -190767866 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 634 25 51 0 0 chr1 6431417 6431456 -190763976 + GC_rich Low_complexity Low_complexity 1 39 0 7 634 21 82 0 0 chr1 6431519 6431568 -190763864 + GC_rich Low_complexity Low_complexity 1 49 0 7 634 3868 190 83 44 chr1 6432084 6432104 -190763328 + Lx7 LINE L1 6515 6535 -1161 7 634 329 0 24 0 chr1 6432104 6432145 -190763287 + (CAA)n Simple_repeat Simple_repeat 2 43 0 7 634 3868 190 83 44 chr1 6432145 6432990 -190762442 + Lx7 LINE L1 6536 7413 -283 7 634 252 86 0 0 chr1 6432992 6433027 -190762405 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 634 542 267 21 11 chr1 6433038 6433227 -190762205 + Lx7 LINE L1 7506 7696 0 7 634 1174 307 42 37 chr1 6433225 6433831 -190761601 - Lx8 LINE L1 -1559 5914 5278 7 634 1847 41 8 0 chr1 6433972 6434215 -190761217 - MTA_Mm LTR MaLR 0 396 152 7 634 6358 86 34 72 chr1 6434211 6435330 -190760102 - MTA_Mm-int LTR MaLR -21 1077 1 7 634 3194 58 5 2 chr1 6435330 6435725 -190759707 - MTA_Mm LTR MaLR 0 396 1 7 634 295 243 87 29 chr1 6435727 6435865 -190759567 - Lx8 LINE L1 -915 5225 5048 7 634 439 258 189 18 chr1 6435884 6436227 -190759205 - L1_Mur3 LINE L1 -1591 4289 3888 7 634 297 269 85 11 chr1 6436265 6436359 -190759073 - Lx8 LINE L1 -1072 6401 6301 7 634 225 244 94 35 chr1 6436363 6436448 -190758984 - Lx9 LINE L1 -1237 6407 6318 7 634 383 261 112 9 chr1 6436514 6436630 -190758802 - B3 SINE B2 -85 131 4 7 634 1086 182 19 5 chr1 6436912 6437122 -190758310 - ORR1B1 LTR MaLR 0 394 182 7 634 1952 99 40 0 chr1 6437122 6437424 -190758008 - MusHAL1 LINE L1 -1818 894 581 7 634 271 287 23 11 chr1 6437559 6437647 -190757785 + MER57C2 LTR ERV1 270 358 -76 7 634 250 327 29 9 chr1 6439815 6439920 -190755512 + PB1D7 SINE Alu 2 108 -12 7 634 363 121 0 0 chr1 6440166 6440224 -190755208 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 634 518 323 109 19 chr1 6440227 6440483 -190754949 - B4 SINE B4 -13 279 1 7 634 275 301 0 35 chr1 6440737 6440823 -190754609 + ID4_ SINE ID 1 83 0 7 634 28 29 0 0 chr1 6441524 6441559 -190753873 + AT_rich Low_complexity Low_complexity 1 35 0 7 634 839 238 83 0 chr1 6441559 6441752 -190753680 - B3 SINE B2 -6 210 2 7 634 24 91 0 0 chr1 6443972 6444038 -190751394 + AT_rich Low_complexity Low_complexity 1 66 0 7 634 224 245 102 0 chr1 6446055 6446104 -190749328 + B2_Mm2 SINE B2 1 54 -141 7 634 1125 247 8 4 chr1 6446104 6446344 -190749088 + Lx6 LINE L1 6926 7166 -294 7 634 207 0 0 0 chr1 6446352 6446375 -190749057 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 634 387 256 22 110 chr1 6446440 6446576 -190748856 - ORR1E LTR MaLR -235 124 1 7 634 8143 28 5 0 chr1 6446874 6448034 -190747398 - L1Md_F2 LINE L1 -2 6580 5415 7 634 235 204 0 39 chr1 6448589 6448640 -190746792 - MER53 DNA hAT 0 193 145 7 634 478 232 90 0 chr1 6448644 6448799 -190746633 - MER53 DNA hAT -19 174 6 7 634 911 252 89 54 chr1 6448839 6449459 -190745973 + L1MA5A LINE L1 2593 3258 -2885 7 634 189 0 0 0 chr1 6449459 6449480 -190745952 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 634 911 289 83 49 chr1 6449480 6449588 -190745844 + L1MA5A LINE L1 3224 3346 -2531 7 634 759 301 112 50 chr1 6449626 6450178 -190745254 + L1MA5A LINE L1 5080 5744 -553 7 634 1137 208 198 20 chr1 6450178 6450532 -190744900 + MTD LTR MaLR 3 419 0 7 634 759 311 71 35 chr1 6450532 6450715 -190744717 + L1MA5A LINE L1 5745 5929 -368 7 634 309 308 57 24 chr1 6451343 6451466 -190743966 + ORR1E LTR MaLR 4 130 -229 7 634 267 258 0 0 chr1 6451787 6451849 -190743583 + MIRc SINE MIR 168 229 -39 7 634 7642 55 2 1 chr1 6452136 6453336 -190742096 - L1Md_F2 LINE L1 0 6582 5382 7 634 606 216 96 0 chr1 6453450 6453575 -190741857 + B1_Mus1 SINE Alu 12 148 0 7 634 215 287 122 95 chr1 6454257 6454446 -190740986 + L2 LINE L2 2396 2589 -830 7 634 285 283 109 61 chr1 6454598 6454643 -190740789 - MTE2b LTR MaLR 0 359 316 7 634 345 62 0 0 chr1 6454643 6454691 -190740741 + (CAA)n Simple_repeat Simple_repeat 1 48 0 7 634 410 300 53 60 chr1 6454691 6454887 -190740545 - MTE2b LTR MaLR -46 333 145 7 634 3370 321 71 17 chr1 6454878 6456039 -190739393 - MTEa-int LTR MaLR -357 1223 1 7 634 1235 271 125 0 chr1 6456039 6456368 -190739064 - MTEa LTR MaLR 0 379 10 7 634 726 145 0 0 chr1 6457527 6457651 -190737781 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 7 634 191 167 24 0 chr1 6457770 6457812 -190737620 + CT-rich Low_complexity Low_complexity 4 46 0 7 634 2005 155 79 37 chr1 6458148 6458551 -190736881 - MTC LTR MaLR -1 420 1 7 634 281 268 108 78 chr1 6459590 6460036 -190735396 - L1MEc LINE L1 -5314 1086 628 8 634 383 56 19 0 chr1 6460201 6460255 -190735177 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 634 743 271 116 0 chr1 6460279 6460530 -190734902 - B4A SINE B4 -12 280 1 8 634 2988 44 0 29 chr1 6461206 6461582 -190733850 - RLTR10B2 LTR ERVK 0 365 1 8 634 186 390 82 34 chr1 6462741 6462887 -190732545 - L2b LINE L2 -8 3367 3215 8 634 315 105 0 0 chr1 6465526 6465583 -190729849 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 634 5591 128 28 29 chr1 6467456 6468402 -190727030 + Lx2 LINE L1 6053 6997 0 8 634 870 54 0 0 chr1 6468599 6468711 -190726721 + (TCCC)n Simple_repeat Simple_repeat 1 112 0 8 634 381 317 94 5 chr1 6468765 6468968 -190726464 - ID_B1 SINE B4 -2 222 2 8 634 360 0 0 0 chr1 6469212 6469252 -190726180 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 634 344 238 25 0 chr1 6469412 6469492 -190725940 - ID4 SINE ID -1 82 1 8 634 327 282 110 37 chr1 6469562 6469698 -190725734 - ID_B1 SINE B4 -1 223 78 8 634 640 239 67 53 chr1 6469880 6470088 -190725344 - B3 SINE B2 -5 211 1 8 634 485 335 91 85 chr1 6471366 6471718 -190723714 - ORR1E LTR MaLR 0 359 6 8 634 240 111 0 0 chr1 6472818 6472863 -190722569 + (T)n Simple_repeat Simple_repeat 1 45 0 8 634 185 228 68 34 chr1 6473066 6473125 -190722307 - L3 LINE CR1 -4288 201 141 8 634 30 0 0 0 chr1 6475396 6475426 -190720006 + AT_rich Low_complexity Low_complexity 1 30 0 8 634 594 0 0 0 chr1 6475915 6475981 -190719451 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 634 1113 64 7 0 chr1 6475983 6476123 -190719309 - B1_Mus2 SINE Alu -6 141 1 8 634 183 80 0 0 chr1 6476539 6476564 -190718868 + (TAA)n Simple_repeat Simple_repeat 3 27 0 8 634 247 258 9 24 chr1 6476695 6476908 -190718524 + GA-rich Low_complexity Low_complexity 1 209 0 8 634 327 121 0 0 chr1 6479363 6479421 -190716011 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 8 634 873 192 58 19 chr1 6480780 6480973 -190714459 - ORR1C1 LTR MaLR 0 421 215 8 634 568 192 181 0 chr1 6483425 6483602 -190711830 - L1MA4 LINE L1 -239 6061 5853 8 634 341 314 142 6 chr1 6483601 6483912 -190711520 - L1MC4 LINE L1 -425 7617 7265 8 634 258 281 43 36 chr1 6484687 6484827 -190710605 + HAL1 LINE L1 1565 1705 -802 8 634 241 276 52 13 chr1 6485070 6485147 -190710285 - Arthur1 DNA Tip100 0 3947 3868 8 634 393 262 141 47 chr1 6485147 6485339 -190710093 + B3 SINE B2 1 210 -6 8 634 2181 244 82 13 chr1 6485340 6486033 -190709399 - Lx5 LINE L1 -758 6702 5745 8 634 473 299 88 44 chr1 6486080 6486465 -190708967 - Arthur1 DNA Tip100 -62 3885 3484 8 634 306 331 129 28 chr1 6486810 6487167 -190708265 + L1MA9 LINE L1 65 457 -6711 8 634 369 0 0 0 chr1 6487739 6487780 -190707652 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 634 964 306 46 36 chr1 6487923 6488336 -190707096 - RLTR14-int LTR ERV1 -4900 417 1 8 634 1529 220 104 3 chr1 6488336 6488683 -190706749 - RLTR14 LTR ERV1 0 382 1 8 634 638 304 114 0 chr1 6488871 6489266 -190706166 + L1MA9 LINE L1 5909 6348 -813 8 634 494 214 62 0 chr1 6489280 6489447 -190705985 + L1MA9 LINE L1 6313 6494 -707 8 634 725 261 67 18 chr1 6489467 6489752 -190705680 + L1MA9 LINE L1 6705 7003 -330 8 634 249 108 0 0 chr1 6490127 6490164 -190705268 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 634 498 267 20 7 chr1 6490323 6490474 -190704958 + RMER4B LTR ERVK 17 169 -416 8 634 218 183 0 99 chr1 6490508 6490599 -190704833 + T-rich Low_complexity Low_complexity 2 83 0 8 634 28089 114 19 7 chr1 6490602 6496710 -190698722 - L1_Mus1 LINE L1 0 6567 380 8 634 397 282 27 0 chr1 6496937 6497047 -190698385 - Lx8 LINE L1 -1161 6312 6200 8 634 264 149 0 0 chr1 6497054 6497101 -190698331 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 8 634 1225 148 9 19 chr1 6497104 6497318 -190698114 - ORR1B2 LTR MaLR 0 367 156 8 634 212 220 0 39 chr1 6497318 6497370 -190698062 + GA-rich Low_complexity Low_complexity 5 54 0 8 634 557 168 0 21 chr1 6497424 6497521 -190697911 - ORR1B2 LTR MaLR -212 155 61 8 634 2254 77 0 7 chr1 6497572 6497872 -190697560 - L1Md_F2 LINE L1 -12 6570 6273 8 634 288 70 0 0 chr1 6497874 6497917 -190697515 + (T)n Simple_repeat Simple_repeat 1 43 0 8 634 5234 194 36 12 chr1 6497917 6499014 -190696418 - ORR1B2-int LTR MaLR -381 1128 5 8 634 1744 183 31 16 chr1 6499016 6499391 -190696041 - ORR1B2 LTR MaLR -3 375 5 8 634 246 62 0 0 chr1 6499393 6499425 -190696007 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 634 450 306 52 15 chr1 6499503 6499639 -190695793 - MTE2b-int LTR MaLR -1438 142 2 8 634 1346 297 22 19 chr1 6499635 6499996 -190695436 - MTE2b LTR MaLR 0 379 18 8 634 22 35 0 0 chr1 6501387 6501416 -190694016 + AT_rich Low_complexity Low_complexity 1 29 0 1 634 32642 73 13 8 chr1 6501651 6508390 -190687042 - L1Md_F2 LINE L1 0 6585 101 2 634 248 125 0 0 chr1 6508361 6508401 -190687031 - L1Md_F2 LINE L1 -5969 553 514 2 634 401 15 61 0 chr1 6508965 6509031 -190686401 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 3 634 842 295 91 53 chr1 6509102 6509421 -190686011 - ORR1D2 LTR MaLR 0 370 40 4 634 366 23 0 0 chr1 6509593 6509636 -190685796 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 634 462 373 86 61 chr1 6509752 6510003 -190685429 - Tigger9b DNA MER2_type -121 503 233 6 634 1100 89 0 14 chr1 6510003 6510141 -190685291 + B1_Mus1 SINE Alu 1 138 -10 7 634 360 59 0 0 chr1 6510141 6510192 -190685240 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 8 634 462 373 86 61 chr1 6510201 6510440 -190684992 - Tigger9b DNA MER2_type -392 232 1 6 634 2433 184 69 51 chr1 6511883 6512554 -190682878 + Lx9 LINE L1 6893 7575 -69 9 634 21 0 0 0 chr1 6512658 6512679 -190682753 + AT_rich Low_complexity Low_complexity 1 21 0 1 634 1305 226 62 105 chr1 6513890 6514280 -190681152 - MTE2a LTR MaLR -4 375 3 1 634 514 290 8 22 chr1 6515174 6515308 -190680124 + B1F SINE Alu 5 136 -13 1 634 342 0 0 0 chr1 6515309 6515347 -190680085 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 634 207 250 0 0 chr1 6515534 6515590 -190679842 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 634 291 93 0 0 chr1 6516136 6516179 -190679253 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 634 244 245 0 0 chr1 6518283 6518336 -190677096 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1 634 1040 106 0 16 chr1 6518390 6518643 -190676789 + (CA)n Simple_repeat Simple_repeat 1 248 0 1 634 5403 70 26 6 chr1 6518658 6519381 -190676051 + L1Md_F2 LINE L1 5845 6582 0 1 634 24 0 0 0 chr1 6519393 6519417 -190676015 + AT_rich Low_complexity Low_complexity 1 24 0 1 634 277 189 89 12 chr1 6519482 6519605 -190675827 + L1_Rod LINE L1 5147 5264 -879 2 634 1873 173 91 10 chr1 6519609 6520102 -190675330 + Lx4B LINE L1 6500 7051 -7 2 634 393 163 0 0 chr1 6520111 6520203 -190675229 + A-rich Low_complexity Low_complexity 1 92 0 2 634 1587 236 119 12 chr1 6520238 6520740 -190674692 + Lx9 LINE L1 6446 7001 -643 2 634 30346 79 4 61 chr1 6520744 6526777 -190668655 - L1_Mus3 LINE L1 -6 6632 966 2 634 5181 85 3 7 chr1 6526797 6527509 -190667923 - L1Md_F2 LINE L1 -13 6569 5861 2 634 25 31 0 0 chr1 6527513 6527545 -190667887 + AT_rich Low_complexity Low_complexity 1 32 0 2 634 7635 39 5 0 chr1 6527545 6528511 -190666921 - L1Md_F2 LINE L1 -3 6579 5609 2 634 2818 167 54 5 chr1 6528510 6529069 -190666363 - L1_Mus3 LINE L1 -5679 937 352 2 634 271 219 21 78 chr1 6530048 6530241 -190665191 + RMER17D LTR ERVK 236 417 -472 2 634 309 341 91 58 chr1 6530221 6530464 -190664968 + MLT1J2 LTR MaLR 198 448 0 2 634 205 394 100 26 chr1 6531537 6531957 -190663475 - L2a LINE L2 -1 3425 2975 3 634 404 258 40 138 chr1 6532049 6532250 -190663182 - MTD LTR MaLR -15 404 182 3 634 288 0 0 0 chr1 6532250 6532282 -190663150 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 3 634 1152 81 0 0 chr1 6532298 6532446 -190662986 - B1_Mus1 SINE Alu 0 148 1 3 634 701 276 25 59 chr1 6532446 6532650 -190662782 - MTD LTR MaLR -210 209 13 3 634 180 265 80 57 chr1 6532650 6532738 -190662694 - L2a LINE L2 -546 2873 2784 3 634 471 255 9 9 chr1 6533034 6533145 -190662287 - B3 SINE B2 -88 128 18 3 634 356 125 16 0 chr1 6534511 6534575 -190660857 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 634 23 0 0 0 chr1 6534846 6534869 -190660563 + AT_rich Low_complexity Low_complexity 1 23 0 3 634 23 54 0 0 chr1 6535907 6535944 -190659488 + AT_rich Low_complexity Low_complexity 1 37 0 3 634 5040 66 1 1 chr1 6536472 6537121 -190658311 - L1_Mus1 LINE L1 0 6567 5919 3 634 268 354 80 37 chr1 6537362 6537550 -190657882 - MER121 Unknown Unknown -1 411 216 3 634 6270 143 24 9 chr1 6537821 6539202 -190656230 - Lx LINE L1 -6 6648 5248 4 634 396 0 0 0 chr1 6539202 6539246 -190656186 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 634 5555 173 18 6 chr1 6539246 6539701 -190655731 - Lx LINE L1 -636 5247 4782 4 634 21 0 0 0 chr1 6539701 6539722 -190655710 + AT_rich Low_complexity Low_complexity 1 21 0 4 634 17852 98 10 4 chr1 6539724 6543230 -190652202 - L1_Mus1 LINE L1 0 6567 3058 4 634 10488 167 28 11 chr1 6543221 6545412 -190650020 - L1_Mur1 LINE L1 -1078 4808 2580 4 634 17325 130 12 59 chr1 6545438 6547284 -190648148 - L1_Mus1 LINE L1 -3 6564 4726 4 634 705 24 0 0 chr1 6547284 6547367 -190648065 + (TTC)n Simple_repeat Simple_repeat 2 84 0 4 634 17325 183 21 124 chr1 6547367 6548511 -190646921 - L1_Mus1 LINE L1 -1152 4725 3773 4 634 3813 36 0 0 chr1 6548511 6548958 -190646474 + L1Md_T LINE L1 6136 6582 0 4 634 17325 176 22 106 chr1 6548958 6552431 -190643001 - L1_Mus1 LINE L1 -2105 3772 675 4 634 349 246 8 3 chr1 6552546 6552664 -190642768 - L1VL1 LINE L1 -6341 81 2 4 634 474 353 65 43 chr1 6552664 6552895 -190642537 - B4A SINE B4 -54 238 3 4 79 28446 44 26 18 chr1 6552904 6554531 -190640901 - L1Md_T LINE L1 0 6582 4919 5 635 228 171 34 136 chr1 6554531 6554619 -190640813 + RMER20A LTR ERVK 170 248 -268 5 635 28446 44 26 18 chr1 6554619 6559093 -190636339 - L1Md_T LINE L1 0 4918 339 5 635 1287 274 36 22 chr1 6559179 6559537 -190635895 + ORR1D2 LTR MaLR 6 368 -2 5 635 327 362 77 10 chr1 6560084 6560293 -190635139 + MIR SINE MIR 10 232 -30 5 635 269 151 19 0 chr1 6560411 6560464 -190634968 - L1MB5 LINE L1 -1 6173 6120 5 635 752 104 48 8 chr1 6560489 6560615 -190634817 - L1_Mus2 LINE L1 -48 6518 6388 5 635 336 247 31 92 chr1 6560636 6560734 -190634698 - B1_Mm SINE Alu -55 92 1 5 635 240 343 0 0 chr1 6560678 6560745 -190634687 - B4A SINE B4 -151 141 75 5 635 565 243 28 0 chr1 6560981 6561125 -190634307 - Lx6 LINE L1 -6 7454 7307 5 635 5094 154 0 2 chr1 6561120 6561973 -190633459 - L1_Mus4 LINE L1 -733 5150 4300 5 635 7393 111 12 6 chr1 6561974 6563438 -190631994 + L1_Mus4 LINE L1 5165 6634 -2 5 635 362 239 0 15 chr1 6563442 6563510 -190631922 + B1_Mur4 SINE Alu 2 68 -82 6 635 261 0 0 0 chr1 6564568 6564597 -190630835 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 635 1560 45 0 10 chr1 6564604 6564805 -190630627 - L1Md_F3 LINE L1 -17 6567 6369 6 635 5796 196 68 10 chr1 6565513 6566779 -190628653 - Lx2B LINE L1 -3 6997 5659 6 635 4690 149 27 20 chr1 6566780 6567645 -190627787 + Lx4B LINE L1 4773 5649 -1327 6 635 323 211 150 80 chr1 6568110 6568223 -190627209 - RMER6C LTR ERVK -569 121 1 6 635 1574 208 10 3 chr1 6568430 6568724 -190626708 - ORR1C1 LTR MaLR -82 296 1 6 635 1001 250 119 56 chr1 6568725 6569085 -190626347 + ORR1D-int LTR MaLR 187 569 -801 6 635 306 0 0 0 chr1 6569137 6569171 -190626261 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 635 4235 228 14 24 chr1 6569173 6570083 -190625349 + Lx9 LINE L1 6457 7357 -287 6 635 332 178 119 18 chr1 6570106 6570215 -190625217 + Lx9 LINE L1 7524 7643 -1 6 635 2218 222 41 10 chr1 6570234 6570717 -190624715 + ORR1D-int LTR MaLR 433 930 -440 7 635 1076 180 83 12 chr1 6570717 6570959 -190624473 - RLTR22_Mur LTR ERVK 0 1848 1590 7 635 4417 149 24 20 chr1 6571139 6571948 -190623484 - RLTR22_Mur LTR ERVK -1036 812 1 7 635 257 352 48 27 chr1 6571948 6571979 -190623453 + ORR1D-int LTR MaLR 1455 1485 -307 7 635 324 0 0 0 chr1 6571979 6572015 -190623417 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 635 1144 240 14 14 chr1 6572015 6572290 -190623142 + ORR1D1-int LTR MaLR 992 1266 -104 7 635 596 143 114 18 chr1 6572296 6572410 -190623022 - B1_Mur2 SINE Alu 0 149 25 7 635 433 218 19 19 chr1 6572408 6572511 -190622921 + ORR1D1-int LTR MaLR 1268 1370 0 7 635 1478 234 75 23 chr1 6572521 6572866 -190622566 + ORR1D1 LTR MaLR 11 373 -1 7 635 258 212 59 59 chr1 6572926 6573011 -190622421 - Tigger7 DNA MER2_type -1452 1039 955 7 635 21 0 0 0 chr1 6573051 6573072 -190622360 + AT_rich Low_complexity Low_complexity 1 21 0 7 635 257 285 107 39 chr1 6573132 6573279 -190622153 + MIRb SINE MIR 119 268 0 7 635 524 236 9 0 chr1 6573394 6573504 -190621928 + PB1D10 SINE Alu 7 117 0 7 635 28 0 0 0 chr1 6573726 6573754 -190621678 + AT_rich Low_complexity Low_complexity 1 28 0 7 635 394 203 0 0 chr1 6573833 6573907 -190621525 + PB1D10 SINE Alu 7 80 -37 8 635 252 302 56 34 chr1 6573907 6573922 -190621510 + B4 SINE B4 92 182 -110 8 635 2466 249 63 114 chr1 6575759 6576669 -190618763 - RCHARR1 DNA MER1_type -70 904 42 8 635 22 0 0 0 chr1 6576972 6576994 -190618438 + AT_rich Low_complexity Low_complexity 1 22 0 8 635 1227 273 62 7 chr1 6577104 6577569 -190617863 - L1MA5 LINE L1 -176 6124 5634 8 635 22 35 0 0 chr1 6577582 6577611 -190617821 + AT_rich Low_complexity Low_complexity 1 29 0 8 635 8209 55 4 1 chr1 6577612 6578720 -190616712 - L1Md_F3 LINE L1 -3 6581 5461 8 635 736 261 55 45 chr1 6578730 6578914 -190616518 - L1MA8 LINE L1 -12 6279 6089 8 635 1129 191 82 154 chr1 6578914 6579317 -190616115 + ORR1D1 LTR MaLR 1 374 0 8 635 736 261 55 45 chr1 6579317 6579421 -190616011 - L1MA8 LINE L1 -203 6088 5988 8 635 1036 221 9 14 chr1 6579682 6579902 -190615530 + MTC LTR MaLR 2 220 -199 8 635 1131 221 22 5 chr1 6579957 6580180 -190615252 + MTC LTR MaLR 195 421 0 8 635 490 105 23 11 chr1 6580747 6580834 -190614598 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 9 635 295 336 26 26 chr1 6580863 6580979 -190614453 - ID_B1 SINE B4 -18 206 91 9 635 282 306 112 0 chr1 6580985 6581083 -190614349 - MLT1D LTR MaLR -58 447 339 9 635 696 88 0 0 chr1 6581713 6581827 -190613605 + (TCCTG)n Simple_repeat Simple_repeat 2 115 0 9 635 370 148 0 36 chr1 6581829 6581848 -190613584 + polypyrimidine Low_complexity Low_complexity 65 82 0 9 635 1058 125 6 0 chr1 6581848 6582024 -190613408 + (TCCCC)n Simple_repeat Simple_repeat 2 178 0 9 635 370 148 0 36 chr1 6582024 6582088 -190613344 + polypyrimidine Low_complexity Low_complexity 2 64 0 9 635 571 161 169 0 chr1 6582559 6582677 -190612755 + B1_Mus1 SINE Alu 4 141 -7 9 635 583 352 76 19 chr1 6583660 6584028 -190611404 + MLT1E3 LTR MaLR 227 615 -9 9 635 26 64 0 0 chr1 6584115 6584162 -190611270 + AT_rich Low_complexity Low_complexity 1 47 0 9 635 211 250 0 0 chr1 6584190 6584230 -190611202 + B3A SINE B2 3 42 -156 1 635 1319 103 0 0 chr1 6585288 6585473 -190609959 + MusHAL1 LINE L1 947 1131 -1581 1 635 2481 78 3 0 chr1 6585467 6585802 -190609630 - L1_Mus2 LINE L1 -625 5941 5606 1 635 2796 95 0 3 chr1 6585798 6586189 -190609243 + L1_Mm LINE L1 4435 4824 -1059 1 635 11492 140 26 10 chr1 6586182 6588153 -190607279 + L1_Mm LINE L1 2325 4327 -1556 1 635 207 0 0 0 chr1 6588206 6588229 -190607203 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 635 293 288 27 55 chr1 6588569 6588679 -190606753 - B1F SINE Alu 0 149 43 1 635 197 405 0 40 chr1 6589528 6589654 -190605778 + MIRb SINE MIR 27 147 -121 1 635 285 29 0 0 chr1 6590171 6590205 -190605227 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 635 28 0 0 0 chr1 6590227 6590255 -190605177 + AT_rich Low_complexity Low_complexity 1 28 0 1 635 513 86 75 0 chr1 6590490 6590583 -190604849 - L1_Mus2 LINE L1 -19 6547 6448 1 635 794 248 80 10 chr1 6590835 6591035 -190604397 - B3 SINE B2 -2 214 1 1 635 21 57 0 0 chr1 6591429 6591464 -190603968 + AT_rich Low_complexity Low_complexity 1 35 0 1 635 285 29 0 0 chr1 6592593 6592627 -190602805 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 635 3135 43 0 37 chr1 6593505 6593911 -190601521 + L1Md_F3 LINE L1 6180 6570 -14 1 635 182 244 44 0 chr1 6596504 6596549 -190598883 + L3 LINE CR1 4157 4203 -286 1 635 702 140 132 7 chr1 6596770 6596921 -190598511 - Lx6 LINE L1 -4 7456 7287 1 635 1895 286 152 51 chr1 6596921 6597702 -190597730 + RMER13A LTR ERVK 1 860 0 1 635 6065 225 54 16 chr1 6597705 6599089 -190596343 - Lx6 LINE L1 -176 7284 5848 1 635 357 372 26 40 chr1 6599393 6599419 -190596013 - B1F1 SINE Alu 0 149 1 1 635 385 350 16 40 chr1 6599419 6599544 -190595888 - ID_B1 SINE B4 -21 203 82 1 635 531 189 45 38 chr1 6599830 6599962 -190595470 - Lx7 LINE L1 -1 7695 7563 1 635 928 127 89 0 chr1 6599962 6600120 -190595312 + B2_Mm2 SINE B2 1 172 -23 1 635 1075 279 30 22 chr1 6600120 6600488 -190594944 - Lx6 LINE L1 -17 7679 6955 1 635 465 252 7 56 chr1 6600506 6600648 -190594784 - Lx6 LINE L1 -1512 6184 6053 1 635 1749 232 140 21 chr1 6600649 6601126 -190594306 - RLTR20C LTR ERVK 0 534 1 1 635 5362 236 41 16 chr1 6601126 6601386 -190594046 - Lx6 LINE L1 -1428 6032 5767 1 635 1268 73 0 11 chr1 6601386 6601567 -190593865 - L1Md_F2 LINE L1 -4 6578 6400 1 635 5362 189 59 32 chr1 6601567 6602687 -190592745 - Lx6 LINE L1 -112 5768 4617 1 635 5768 118 69 41 chr1 6602688 6603703 -190591729 - RLTR22_Mur LTR ERVK 0 1848 806 1 635 228 200 42 14 chr1 6603726 6603797 -190591635 - Lx6 LINE L1 -1501 4379 4307 1 635 184 77 0 49 chr1 6603850 6603891 -190591541 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 1 635 58 84 0 0 chr1 6603916 6604058 -190591374 + AT_rich Low_complexity Low_complexity 1 142 0 1 635 317 368 0 8 chr1 6605220 6605346 -190590086 + (TG)n Simple_repeat Simple_repeat 2 126 0 1 635 314 203 14 0 chr1 6606197 6606271 -190589161 + Lx9 LINE L1 7405 7479 -165 1 635 22140 103 8 9 chr1 6606579 6610629 -190584803 + L1_Mus1 LINE L1 2525 6566 -1 1 635 350 116 41 21 chr1 6610699 6610796 -190584636 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 1 635 1440 210 114 28 chr1 6611297 6611655 -190583777 + RMER10B LTR ERVL 6 394 -4 1 635 286 258 114 136 chr1 6612350 6612570 -190582862 + RMER2 LTR ERV1 349 563 -4 1 635 249 230 162 0 chr1 6612575 6612649 -190582783 + PB1D10 SINE Alu 32 117 0 1 635 4354 148 23 9 chr1 6612910 6613654 -190581778 + RMER6A LTR ERVK 1 754 -2 1 635 429 371 65 0 chr1 6614066 6614190 -190581242 - RSINE1 SINE B4 -26 139 8 1 635 1653 217 70 18 chr1 6614546 6614938 -190580494 + MTD LTR MaLR 1 405 -14 1 635 239 315 70 97 chr1 6615125 6615311 -190580121 + RLTR18B LTR ERVK 92 272 -240 1 635 22 56 0 0 chr1 6615933 6615969 -190579463 + AT_rich Low_complexity Low_complexity 1 36 0 1 635 281 294 161 31 chr1 6616194 6616324 -190579108 + MLT1A LTR MaLR 1 147 -218 1 635 298 350 16 0 chr1 6616347 6616470 -190578962 + MLT1A LTR MaLR 248 372 -2 1 635 28924 25 18 15 chr1 6616521 6618155 -190577277 - L1Md_T LINE L1 0 6582 4919 1 635 231 183 46 77 chr1 6618155 6618220 -190577212 + RMER20A LTR ERVK 186 248 -268 1 635 28924 25 18 15 chr1 6618220 6620926 -190574506 - L1Md_T LINE L1 0 4918 2161 1 635 4838 111 53 16 chr1 6620907 6622152 -190573280 - L1Md_F LINE L1 -4241 1645 313 1 635 230 326 157 94 chr1 6622225 6622384 -190573048 - B4 SINE B4 0 292 124 1 635 2158 166 35 38 chr1 6622478 6622873 -190572559 + ORR1B1 LTR MaLR 1 394 0 1 635 329 93 0 18 chr1 6623271 6623326 -190572106 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 635 1002 306 7 11 chr1 6623352 6623633 -190571799 - B4A SINE B4 -8 284 5 1 635 1352 219 153 6 chr1 6623736 6624057 -190571375 - MTC LTR MaLR -19 402 35 1 635 835 192 226 0 chr1 6624060 6624237 -190571195 + URR1B DNA MER1_type 2 218 -7 1 635 276 30 0 0 chr1 6624245 6624278 -190571154 - MTC LTR MaLR -386 33 1 1 635 902 308 33 65 chr1 6624654 6624991 -190570441 - MTEb LTR MaLR 0 379 54 1 635 350 139 0 14 chr1 6625300 6625373 -190570059 + GA-rich Low_complexity Low_complexity 1 72 0 1 635 8018 26 0 0 chr1 6626126 6627609 -190567823 - L1Md_A LINE L1 -1 6581 5099 1 635 304 322 91 37 chr1 6627609 6627796 -190567636 - MER58B DNA MER1_type -65 276 80 1 635 195 42 0 0 chr1 6627836 6627860 -190567572 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 635 465 19 0 0 chr1 6628407 6628461 -190566971 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 635 559 259 193 0 chr1 6628559 6628694 -190566738 + Lx8 LINE L1 7055 7215 -258 1 635 1042 68 12 0 chr1 6628694 6628855 -190566577 + (GA)n Simple_repeat Simple_repeat 1 163 0 1 635 559 259 193 0 chr1 6628855 6628916 -190566516 + Lx8 LINE L1 7216 7288 -185 1 635 863 200 76 14 chr1 6628976 6629102 -190566330 + RMER17C LTR ERVK 1 133 -277 1 635 261 0 0 0 chr1 6629102 6629131 -190566301 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 635 863 175 103 14 chr1 6629131 6629271 -190566161 + RMER17C LTR ERVK 134 410 0 1 635 465 146 0 64 chr1 6629956 6630066 -190565366 - L1Md_F2 LINE L1 -1 6581 6479 1 635 6311 228 105 27 chr1 6630549 6631392 -190564040 - Lx7 LINE L1 -54 7642 6750 1 635 955 157 183 0 chr1 6631392 6631583 -190563849 - URR1A DNA MER1_type 0 226 1 1 635 6311 189 106 21 chr1 6631583 6633168 -190562264 - Lx7 LINE L1 -947 6749 5014 1 635 1878 251 50 39 chr1 6633201 6633823 -190561609 - L1_Mur3 LINE L1 -6805 907 279 1 635 414 262 70 2 chr1 6633881 6634061 -190561371 - Lx7 LINE L1 -1419 4428 4243 1 635 6074 101 3 6 chr1 6634067 6634935 -190560497 - L1_Mus3 LINE L1 -3 6635 5770 1 635 29888 68 3 6 chr1 6634948 6639769 -190555663 + L1Md_A LINE L1 441 5245 -638 1 635 316 105 105 0 chr1 6639769 6639826 -190555606 + L1_Mur2 LINE L1 5119 5181 -696 1 635 916 268 78 58 chr1 6639840 6639946 -190555486 - Lx7 LINE L1 -1680 4200 4103 1 635 3303 68 2 11 chr1 6639946 6640390 -190555042 - L1_Mus2 LINE L1 0 6566 6127 1 635 916 268 78 58 chr1 6640390 6640798 -190554634 - Lx7 LINE L1 -1778 4102 3676 1 635 350 252 29 29 chr1 6640811 6640913 -190554519 + B1F2 SINE Alu 31 132 -17 1 635 395 353 37 0 chr1 6640916 6641052 -190554380 + RSINE1 SINE B4 4 144 -21 1 635 192 77 0 0 chr1 6641069 6641095 -190554337 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 635 206 62 0 30 chr1 6641204 6641237 -190554195 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 635 1137 264 77 20 chr1 6641238 6641640 -190553792 - Lx8 LINE L1 -25 7448 7024 1 635 404 225 129 78 chr1 6641761 6641954 -190553478 - Lx8 LINE L1 -5 7468 7266 1 635 1194 61 0 0 chr1 6641993 6642141 -190553291 + B1_Mus1 SINE Alu 1 148 0 1 635 270 0 0 0 chr1 6642149 6642179 -190553253 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 635 699 188 17 0 chr1 6642179 6642355 -190553077 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 635 614 294 109 17 chr1 6642357 6642651 -190552781 - Lx8 LINE L1 -242 7231 6911 1 635 270 290 98 13 chr1 6642648 6642882 -190552550 - L1M2 LINE L1 -2945 3198 2945 1 635 234 344 0 0 chr1 6642893 6642957 -190552475 - MTE-int LTR MaLR -900 680 617 1 635 590 274 41 0 chr1 6642974 6643120 -190552312 - B3 SINE B2 -6 210 59 1 635 207 0 0 0 chr1 6643134 6643157 -190552275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 635 6694 101 35 7 chr1 6643157 6644605 -190550827 - Lx LINE L1 -14 6640 5149 1 635 1370 331 57 24 chr1 6644614 6645159 -190550273 - MTE-int LTR MaLR -931 649 87 1 635 674 264 149 100 chr1 6645198 6645561 -190549871 - MTEa LTR MaLR -4 375 1 1 635 266 337 116 0 chr1 6645607 6645693 -190549739 + RSINE1 SINE B4 2 97 -68 1 635 690 228 0 32 chr1 6646121 6646275 -190549157 - B1_Mur1 SINE Alu 0 149 1 1 635 21 36 0 0 chr1 6646337 6646365 -190549067 + AT_rich Low_complexity Low_complexity 1 28 0 1 635 180 189 91 36 chr1 6649716 6649771 -190545661 - L2 LINE L2 -2881 538 481 1 635 1576 217 46 26 chr1 6649862 6650208 -190545224 + ORR1D1 LTR MaLR 1 353 -21 1 635 207 0 0 0 chr1 6650694 6650717 -190544715 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 1 635 5289 81 18 9 chr1 6651340 6652079 -190543353 - L1_Mus3 LINE L1 0 6638 5894 1 635 2534 118 7 2 chr1 6652079 6652486 -190542946 - L1_Mm LINE L1 -306 5577 5169 1 635 33 0 0 0 chr1 6652569 6652602 -190542830 + AT_rich Low_complexity Low_complexity 1 33 0 1 635 375 60 0 0 chr1 6652702 6652752 -190542680 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 635 3539 15 2 0 chr1 6652844 6653239 -190542193 - MTA_Mm LTR MaLR 0 396 1 1 635 9510 24 2 0 chr1 6653239 6654335 -190541097 - MTA_Mm-int LTR MaLR 0 1098 1 1 635 3542 15 2 0 chr1 6654335 6654730 -190540702 - MTA_Mm LTR MaLR 0 396 1 1 635 315 289 25 1 chr1 6654887 6654988 -190540444 + B1F SINE Alu 2 105 -15 1 635 1562 288 162 32 chr1 6655056 6656191 -190539241 - Lx8 LINE L1 0 7473 6191 1 635 201 253 0 0 chr1 6656353 6656440 -190538992 + CT-rich Low_complexity Low_complexity 2 88 0 1 635 225 295 26 87 chr1 6656461 6656576 -190538856 - RLTR25B LTR ERVK -479 549 442 1 635 755 246 0 0 chr1 6656477 6656615 -190538817 - B1_Mur2 SINE Alu -10 139 2 2 635 298 351 42 50 chr1 6656508 6656628 -190538804 - B4 SINE B4 -95 197 79 2 635 959 245 15 5 chr1 6658940 6659145 -190536287 + B3 SINE B2 10 216 0 2 635 12662 95 24 16 chr1 6659169 6661948 -190533484 + L1VL2 LINE L1 287 3078 -537 2 635 482 46 0 15 chr1 6661948 6662014 -190533418 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 2 635 6477 65 30 1 chr1 6662036 6663274 -190532158 - L1Md_F2 LINE L1 -19 6563 5272 2 635 2967 178 22 9 chr1 6663269 6663903 -190531529 + L1_Mur2 LINE L1 3351 3992 -1885 2 635 859 241 129 19 chr1 6664109 6664380 -190531052 + Lx8 LINE L1 6812 7112 -361 2 635 360 270 0 0 chr1 6664380 6664506 -190530926 + (CA)n Simple_repeat Simple_repeat 1 126 0 2 635 306 257 14 41 chr1 6664513 6664586 -190530846 + HAL1-3A_ME LINE L1 1982 2052 -806 2 635 246 232 0 18 chr1 6664893 6664950 -190530482 + GA-rich Low_complexity Low_complexity 2 57 0 2 635 5527 119 92 14 chr1 6665738 6667003 -190528429 - Lx LINE L1 0 6654 5290 2 635 5904 72 4 0 chr1 6667003 6667770 -190527662 - L1Md_T LINE L1 0 6582 5813 2 635 5527 154 9 4 chr1 6667770 6668205 -190527227 - Lx LINE L1 -594 5289 4855 2 635 321 216 68 58 chr1 6668202 6668305 -190527127 - Lx8 LINE L1 -558 6915 6812 2 635 1399 306 107 55 chr1 6668325 6669842 -190525590 - L1_Rod LINE L1 -45 5802 4207 2 635 606 28 0 0 chr1 6669848 6669920 -190525512 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 635 347 233 0 0 chr1 6670051 6670124 -190525308 - RLTR19-int LTR ERVK -2028 4109 4037 2 635 385 176 105 42 chr1 6670280 6670375 -190525057 - RLTR19-int LTR ERVK -2176 3961 3861 2 635 618 261 184 52 chr1 6670471 6670872 -190524560 - RMER21B LTR ERV1 -275 567 114 2 635 263 125 60 40 chr1 6670900 6670950 -190524482 - RMER4B LTR ERVK -132 453 403 2 635 2282 299 85 77 chr1 6670950 6672580 -190522852 - RodERV21-int LTR ERV1 -3348 1643 1 2 635 392 217 142 31 chr1 6672669 6672831 -190522601 - RMER21B LTR ERV1 -340 502 323 2 635 671 265 14 9 chr1 6673590 6673811 -190521621 - L1_Mur3 LINE L1 -1965 3915 3694 2 635 301 227 102 0 chr1 6673811 6673899 -190521533 - L1M2 LINE L1 -2829 3314 3218 2 635 39 22 0 0 chr1 6674159 6674205 -190521227 + AT_rich Low_complexity Low_complexity 1 46 0 2 635 426 301 98 31 chr1 6674376 6674763 -190520669 - L1_Mur3 LINE L1 -329 5551 5139 2 635 854 212 42 0 chr1 6674892 6675057 -190520375 - B3 SINE B2 -5 211 40 2 635 564 256 65 122 chr1 6675080 6675360 -190520072 - L1M2 LINE L1 -1097 5046 4750 2 635 633 276 142 27 chr1 6675360 6675692 -190519740 + ORR1D2 LTR MaLR 1 370 0 2 635 564 224 81 101 chr1 6675692 6675948 -190519484 - L1M2 LINE L1 -1394 4749 4511 2 635 403 264 198 24 chr1 6676363 6676701 -190518731 + L1M3 LINE L1 3799 4195 -1945 2 635 183 42 0 0 chr1 6676735 6676759 -190518673 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 635 2237 85 3 0 chr1 6676816 6677110 -190518322 - ORR1A1 LTR MaLR -51 295 1 2 635 2631 65 6 17 chr1 6677110 6677468 -190517964 - ORR1A1-int LTR MaLR 0 1792 1439 2 635 4660 96 106 1 chr1 6677493 6678174 -190517258 + L1_Mus3 LINE L1 5882 6633 -5 2 635 1283 250 106 8 chr1 6678304 6678663 -190516769 + MTD LTR MaLR 3 396 -23 2 635 6439 59 34 12 chr1 6679368 6680714 -190514718 - L1Md_F2 LINE L1 -2 6580 5189 2 635 3058 23 0 135 chr1 6680714 6681165 -190514267 + RLTR10 LTR ERVK 1 390 0 2 635 7707 40 17 2 chr1 6681167 6682148 -190513284 + RLTR10-int LTR ERVK 3 998 -989 2 635 280 256 62 39 chr1 6682212 6682342 -190513090 + RLTR10-int LTR ERVK 1462 1594 -5987 2 635 8386 19 0 1 chr1 6682424 6683420 -190512012 + RLTR10-int LTR ERVK 990 1984 -3 2 635 3058 23 0 135 chr1 6683422 6683873 -190511559 + RLTR10 LTR ERVK 1 390 0 2 635 3385 79 0 14 chr1 6683873 6684363 -190511069 - L1Md_F LINE L1 -689 5194 4712 2 79 2174 152 79 16 chr1 6684365 6684746 -190510686 - RLTR44A LTR ERVK 0 405 1 2 636 4512 38 36 2 chr1 6684746 6685325 -190510107 - RLTR44-int LTR ERVK 0 2812 2214 2 636 707 86 0 9 chr1 6685636 6685742 -190509690 - RLTR44-int LTR ERVK -1831 981 877 2 636 23581 81 6 3 chr1 6685772 6690095 -190505337 - L1Md_F LINE L1 -1177 4706 371 2 636 4725 124 22 1 chr1 6690096 6691101 -190504331 - L1Md_F LINE L1 -4467 1416 358 2 636 26 74 0 0 chr1 6691536 6691590 -190503842 + AT_rich Low_complexity Low_complexity 1 54 0 2 636 237 83 0 0 chr1 6692386 6692422 -190503010 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 636 273 98 0 0 chr1 6693509 6693550 -190501882 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 636 307 60 20 20 chr1 6693561 6693612 -190501820 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 636 25 0 0 0 chr1 6694047 6694072 -190501360 + AT_rich Low_complexity Low_complexity 1 25 0 2 636 515 193 157 34 chr1 6694076 6694312 -190501120 - Lx9 LINE L1 -23 7621 7357 2 636 1157 248 49 6 chr1 6694317 6694641 -190500791 - Lx9 LINE L1 -397 7247 6910 2 636 6746 57 9 6 chr1 6694643 6695553 -190499879 + L1_Mus2 LINE L1 5654 6566 0 2 636 1912 279 172 25 chr1 6695552 6696134 -190499298 - Lx9 LINE L1 -720 6924 6292 2 636 1680 185 173 3 chr1 6696134 6696492 -190498940 - MTC LTR MaLR 0 421 3 2 636 2382 246 84 22 chr1 6696492 6697515 -190497917 - Lx9 LINE L1 -1353 6291 5096 2 636 373 216 0 22 chr1 6697527 6697617 -190497815 - Lx9 LINE L1 -884 4963 4876 2 636 655 258 46 0 chr1 6697612 6697806 -190497626 - L1_Rod LINE L1 -2 5845 5643 2 636 309 248 119 38 chr1 6697801 6697960 -190497472 - L1_Mur3 LINE L1 -477 5403 5232 2 636 32 57 0 0 chr1 6697962 6698015 -190497417 + AT_rich Low_complexity Low_complexity 1 53 0 2 636 7063 141 46 1 chr1 6698101 6699901 -190495531 - L1_Mus3 LINE L1 -4 6634 4683 2 636 26 30 0 0 chr1 6699917 6699950 -190495482 + AT_rich Low_complexity Low_complexity 1 33 0 2 636 25 51 0 0 chr1 6701354 6701393 -190494039 + AT_rich Low_complexity Low_complexity 1 39 0 2 636 377 236 9 0 chr1 6701776 6701882 -190493550 - Lx6 LINE L1 -169 7291 7185 2 636 227 316 71 0 chr1 6702382 6702480 -190492952 - L1M3 LINE L1 -454 5714 5610 2 636 469 279 94 17 chr1 6702679 6702967 -190492465 - L1M3 LINE L1 -881 5259 4950 2 636 477 0 0 0 chr1 6703946 6703999 -190491433 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 636 316 321 148 31 chr1 6704173 6704369 -190491063 - B4 SINE B4 -73 219 1 2 636 984 297 40 54 chr1 6705037 6705423 -190490009 + MTEa LTR MaLR 1 357 -2 2 636 582 323 33 35 chr1 6705976 6706379 -190489053 + Lx9 LINE L1 7169 7471 -2 2 636 285 322 176 32 chr1 6707793 6708133 -190487299 + L2 LINE L2 2489 2877 -542 2 636 327 49 0 0 chr1 6708522 6708563 -190486869 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 636 2025 245 164 17 chr1 6708751 6709464 -190485968 - Lx7 LINE L1 -2 7694 6877 2 636 709 231 42 32 chr1 6709474 6709632 -190485800 + 7SLRNA srpRNA srpRNA 9 167 -147 2 636 777 244 68 24 chr1 6710196 6710402 -190485030 + B3 SINE B2 2 216 0 2 636 1173 278 87 61 chr1 6710964 6711747 -190483685 + L1MC1 LINE L1 5476 6278 -55 2 636 612 27 0 0 chr1 6712674 6712748 -190482684 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 2 636 956 85 15 0 chr1 6712748 6712878 -190482554 - B1_Mm SINE Alu -10 137 6 2 636 186 324 40 26 chr1 6713003 6713079 -190482353 + L2 LINE L2 330 406 -3013 2 636 792 83 0 0 chr1 6713556 6713665 -190481767 + (TC)n Simple_repeat Simple_repeat 2 110 0 2 636 351 0 0 0 chr1 6713665 6713703 -190481729 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 636 186 355 39 13 chr1 6714493 6714570 -190480862 + MIR SINE MIR 1 79 -183 2 636 3637 156 109 102 chr1 6715285 6716180 -190479252 - RMER19B LTR ERVK 0 902 1 2 636 403 287 62 75 chr1 6716194 6716664 -190478768 + L1MB8 LINE L1 4023 4486 -1660 2 636 1422 303 108 28 chr1 6716747 6718057 -190477375 + L1MB8 LINE L1 4634 6055 -123 2 636 225 94 0 0 chr1 6720428 6720460 -190474972 + (TGGG)n Simple_repeat Simple_repeat 1 32 0 2 636 306 0 0 0 chr1 6724449 6724483 -190470949 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 636 189 0 0 0 chr1 6724884 6724905 -190470527 + (A)n Simple_repeat Simple_repeat 1 21 0 2 636 405 0 0 0 chr1 6727062 6727107 -190468325 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 636 212 314 87 45 chr1 6727319 6727545 -190467887 + MIRm SINE MIR 2 229 -39 2 636 27 62 0 0 chr1 6728434 6728482 -190466950 + AT_rich Low_complexity Low_complexity 1 48 0 2 636 1521 277 86 35 chr1 6734249 6735049 -190460383 - L1MB8 LINE L1 -17 6161 5321 2 636 300 111 0 0 chr1 6735552 6735597 -190459835 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 636 395 277 0 0 chr1 6735597 6735680 -190459752 - B4 SINE B4 -204 88 6 2 636 30 0 0 0 chr1 6737318 6737348 -190458084 + AT_rich Low_complexity Low_complexity 1 30 0 2 636 266 324 28 0 chr1 6737376 6737447 -190457985 - B4A SINE B4 -2 290 218 2 636 359 53 35 0 chr1 6737449 6737506 -190457926 + (GTTTG)n Simple_repeat Simple_repeat 1 59 0 2 636 612 344 62 0 chr1 6737506 6737701 -190457731 - B4A SINE B4 -73 219 13 2 636 394 310 35 21 chr1 6737778 6737923 -190457509 + B1F SINE Alu 3 149 0 2 636 1181 61 0 7 chr1 6738701 6738849 -190456583 + B1_Mus1 SINE Alu 1 147 -1 2 636 28 0 0 0 chr1 6738917 6738945 -190456487 + AT_rich Low_complexity Low_complexity 1 28 0 2 636 21 36 0 0 chr1 6739133 6739161 -190456271 + AT_rich Low_complexity Low_complexity 1 28 0 2 636 252 0 0 0 chr1 6739289 6739317 -190456115 + (T)n Simple_repeat Simple_repeat 1 28 0 2 636 23 0 0 0 chr1 6740097 6740120 -190455312 + AT_rich Low_complexity Low_complexity 1 23 0 2 636 31 26 0 0 chr1 6740272 6740310 -190455122 + AT_rich Low_complexity Low_complexity 1 38 0 2 636 291 268 219 44 chr1 6740671 6740831 -190454601 + MER5A DNA MER1_type 1 188 -1 2 636 1095 147 0 0 chr1 6740831 6740994 -190454438 - Lx4B LINE L1 -244 6814 6652 2 636 1291 127 32 14 chr1 6740994 6741210 -190454222 + Lx4A LINE L1 6837 7056 -2 2 636 183 80 0 0 chr1 6741230 6741255 -190454177 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 2 636 204 121 0 29 chr1 6741791 6741825 -190453607 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 636 185 35 0 65 chr1 6742279 6742310 -190453122 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 636 903 141 175 16 chr1 6742767 6742961 -190452471 - URR1B DNA MER1_type 0 225 1 2 636 525 318 163 8 chr1 6743373 6743847 -190451585 + MLT1D LTR MaLR 48 622 -2 2 636 2831 83 5 0 chr1 6744496 6744934 -190450498 - L1_Mus1 LINE L1 0 6567 6169 3 636 206 176 0 56 chr1 6744934 6744945 -190450487 + T-rich Low_complexity Low_complexity 1 11 0 3 636 235 233 291 0 chr1 6745294 6745380 -190450052 + PB1D10 SINE Alu 2 112 -5 3 636 25 65 0 0 chr1 6746546 6746592 -190448840 + AT_rich Low_complexity Low_complexity 1 46 0 3 636 472 235 0 0 chr1 6751997 6752078 -190443354 + ID4_ SINE ID 2 82 -1 3 636 246 347 0 0 chr1 6754164 6754239 -190441193 + ID4_ SINE ID 2 76 -7 3 636 868 318 73 8 chr1 6754389 6754649 -190440783 + B4A SINE B4 16 292 0 3 636 206 136 0 22 chr1 6755010 6755042 -190440390 + polypyrimidine Low_complexity Low_complexity 15 46 0 3 636 1127 68 6 28 chr1 6755042 6755224 -190440208 + (TCC)n Simple_repeat Simple_repeat 3 180 0 3 636 206 136 0 22 chr1 6755224 6755236 -190440196 + polypyrimidine Low_complexity Low_complexity 3 14 0 3 636 189 0 0 0 chr1 6755747 6755768 -190439664 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 636 754 177 8 30 chr1 6755770 6755904 -190439528 - B1_Mur1 SINE Alu -11 138 8 3 636 451 318 6 86 chr1 6755904 6755932 -190439500 - B4 SINE B4 -77 215 67 3 636 206 118 0 0 chr1 6756441 6756475 -190438957 + (A)n Simple_repeat Simple_repeat 1 34 0 3 636 234 0 0 0 chr1 6756549 6756575 -190438857 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 636 440 133 0 12 chr1 6760907 6760991 -190434441 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 3 636 1669 25 0 0 chr1 6762401 6762601 -190432831 + L1Md_A LINE L1 6383 6582 0 3 636 446 344 21 11 chr1 6765432 6765623 -190429809 + MER2 DNA MER2_type 147 339 -6 3 636 450 36 0 0 chr1 6765626 6765682 -190429750 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 636 3570 79 30 0 chr1 6766322 6766791 -190428641 - L1_Mus1 LINE L1 -1 6566 6084 3 636 1294 92 11 0 chr1 6766791 6766976 -190428456 + L1_Mus1 LINE L1 5899 6085 -481 3 636 379 310 53 23 chr1 6767778 6767910 -190427522 + Lx8 LINE L1 7142 7277 -196 3 636 534 70 0 0 chr1 6767913 6767984 -190427448 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 636 258 358 23 66 chr1 6769160 6769417 -190426015 + L2a LINE L2 2973 3218 -208 3 636 210 329 39 13 chr1 6769518 6769595 -190425837 + L2a LINE L2 3348 3426 0 3 636 441 270 30 0 chr1 6769972 6770072 -190425360 + RSINE1 SINE B4 6 108 -57 3 636 235 263 47 66 chr1 6770188 6770294 -190425138 - ORR1A2 LTR MaLR -80 247 144 3 636 383 136 0 12 chr1 6771232 6771314 -190424118 - L1Md_F2 LINE L1 -1 6581 6501 3 636 270 344 0 23 chr1 6771359 6771487 -190423945 - B1_Mus1 SINE Alu -1 147 23 3 636 272 272 58 10 chr1 6772459 6772563 -190422869 - RMER1C Other Other -5 1337 1229 3 636 1786 303 83 37 chr1 6772498 6773364 -190422068 - Lx8 LINE L1 -30 7443 6538 3 636 403 342 157 10 chr1 6773473 6773869 -190421563 - L2 LINE L2 -422 2997 2544 3 636 907 242 37 44 chr1 6774698 6774992 -190420440 - Lx8 LINE L1 -30 7443 7152 3 636 324 0 0 0 chr1 6774995 6775031 -190420401 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 636 2341 213 67 44 chr1 6775043 6775729 -190419703 - Lx9 LINE L1 -3 7641 6940 3 636 351 80 7 0 chr1 6775738 6775801 -190419631 + Lx LINE L1 6596 6652 -2 3 636 927 154 0 0 chr1 6775798 6775947 -190419485 - Lx9 LINE L1 -695 6949 6801 3 636 2337 108 5 22 chr1 6775986 6776355 -190419077 - L1_Mus3 LINE L1 0 6638 6276 3 636 330 216 264 31 chr1 6777601 6777730 -190417702 - L1M5 LINE L1 -814 5332 5174 3 636 278 314 122 16 chr1 6778714 6779164 -190416268 - L1M5 LINE L1 -1428 4718 4221 3 636 438 328 59 73 chr1 6779169 6779389 -190416043 + B4 SINE B4 4 220 -72 3 636 504 0 0 0 chr1 6780909 6780965 -190414467 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 636 360 0 0 0 chr1 6780969 6781009 -190414423 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 636 887 292 68 6 chr1 6781293 6781630 -190413802 - Lx8 LINE L1 -331 7142 6785 3 636 319 252 9 97 chr1 6781813 6781927 -190413505 - B3A SINE B2 0 198 95 3 636 262 340 53 0 chr1 6782266 6782416 -190413016 - L1MB1 LINE L1 -19 6149 5992 3 636 914 302 79 25 chr1 6782450 6782929 -190412503 - Lx8 LINE L1 -2 7471 6967 3 636 1087 274 112 3 chr1 6782985 6783343 -190412089 - Lx8 LINE L1 -630 6843 6447 3 636 334 262 128 12 chr1 6783347 6783591 -190411841 - L1MB1 LINE L1 -336 5976 5695 3 636 229 234 117 0 chr1 6783593 6783670 -190411762 + L1MB1 LINE L1 5573 5658 -510 3 636 1103 61 7 0 chr1 6788116 6788264 -190407168 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 3 636 493 15 15 15 chr1 6788493 6788560 -190406872 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3 636 571 184 50 45 chr1 6788668 6788867 -190406565 + RMER17C LTR ERVK 72 271 -139 3 636 268 308 66 44 chr1 6789278 6789414 -190406018 + MIRc SINE MIR 9 147 -121 3 636 183 231 65 149 chr1 6789499 6789606 -190405826 - MIR3 SINE MIR -44 164 67 3 636 201 167 0 0 chr1 6791038 6791074 -190404358 + A-rich Low_complexity Low_complexity 1 36 0 3 636 504 48 0 0 chr1 6791399 6791462 -190403970 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 636 387 0 0 0 chr1 6792128 6792171 -190403261 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 636 342 373 9 0 chr1 6792230 6792340 -190403092 - PB1D10 SINE Alu -1 116 6 3 636 23 0 0 0 chr1 6793286 6793309 -190402123 + AT_rich Low_complexity Low_complexity 1 23 0 3 636 186 43 0 0 chr1 6794157 6794180 -190401252 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 636 436 312 11 28 chr1 6796485 6796666 -190398766 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3 636 463 323 161 5 chr1 6798197 6798421 -190397011 - MER74A LTR ERVL -282 276 18 3 636 946 228 55 0 chr1 6799936 6800138 -190395294 - B3 SINE B2 -2 214 2 3 636 424 276 43 36 chr1 6801389 6801528 -190393904 - MTD LTR MaLR -5 414 275 3 636 442 272 52 9 chr1 6801535 6801650 -190393782 + B3 SINE B2 14 133 -83 3 636 616 299 90 17 chr1 6801698 6801952 -190393480 - MTD LTR MaLR -150 269 1 3 636 6155 75 49 7 chr1 6802103 6803004 -190392428 - L1_Mus4 LINE L1 -7 6629 5691 3 636 570 269 91 30 chr1 6803453 6803718 -190391714 - Lx7 LINE L1 -388 7308 7028 3 636 1586 244 43 42 chr1 6803723 6804300 -190391132 - L1_Mur3 LINE L1 -2043 3837 3260 3 636 3505 215 70 24 chr1 6804290 6805375 -190390057 - L1_Mur3 LINE L1 -3305 2575 1441 3 636 5714 69 13 0 chr1 6805663 6806456 -190388976 - L1_Mm LINE L1 -1810 4073 3271 3 636 3358 85 26 0 chr1 6806456 6806913 -190388519 + L1_Mus1 LINE L1 6099 6567 0 3 636 21 0 0 0 chr1 6807934 6807955 -190387477 + AT_rich Low_complexity Low_complexity 1 21 0 3 636 853 113 45 8 chr1 6808089 6808223 -190387209 - B1_Mus1 SINE Alu -2 146 8 3 636 1480 166 203 17 chr1 6812762 6813063 -190382369 - ORR1B2 LTR MaLR -8 359 3 3 636 463 266 26 9 chr1 6814054 6814168 -190381264 + PB1D10 SINE Alu 1 116 -1 3 636 332 372 48 15 chr1 6814236 6814457 -190380975 - MIR SINE MIR -15 253 23 3 637 21 36 0 0 chr1 6815851 6815879 -190379553 + AT_rich Low_complexity Low_complexity 1 28 0 3 637 288 0 0 0 chr1 6815977 6816009 -190379423 + (A)n Simple_repeat Simple_repeat 1 32 0 3 637 3250 43 5 5 chr1 6816558 6816954 -190378478 + MTA_Mm LTR MaLR 1 396 0 3 637 735 262 75 20 chr1 6818200 6818399 -190377033 - B3 SINE B2 -5 211 2 3 637 402 223 8 120 chr1 6819258 6819375 -190376057 + PB1D10 SINE Alu 1 104 -13 3 637 1382 30 0 0 chr1 6819375 6819542 -190375890 - L1Md_A LINE L1 -2 6580 6414 3 637 23 0 0 0 chr1 6820382 6820405 -190375027 + AT_rich Low_complexity Low_complexity 1 23 0 3 637 183 184 0 0 chr1 6820534 6820572 -190374860 + GA-rich Low_complexity Low_complexity 2 39 0 3 637 1067 106 0 0 chr1 6820965 6821106 -190374326 - B1_Mus2 SINE Alu -6 141 1 3 637 453 127 0 0 chr1 6821429 6821508 -190373924 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 637 405 0 0 0 chr1 6822211 6822256 -190373176 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 637 22 56 0 0 chr1 6823420 6823456 -190371976 + AT_rich Low_complexity Low_complexity 1 36 0 3 637 230 130 130 0 chr1 6824140 6824194 -190371238 + L1MA6 LINE L1 6200 6260 -40 3 637 709 184 12 0 chr1 6824623 6824791 -190370641 + (TGAG)n Simple_repeat Simple_repeat 2 171 0 3 637 189 333 14 14 chr1 6825400 6825473 -190369959 + L2 LINE L2 2993 3065 -354 3 637 2939 84 2 2 chr1 6825499 6825894 -190369538 - MTB LTR MaLR 0 400 6 3 637 2353 202 91 2 chr1 6826329 6826854 -190368578 - Lx5 LINE L1 -5 7045 6474 3 637 225 353 113 28 chr1 6826979 6827227 -190368205 - MARNA DNA Mariner -50 536 268 3 637 10697 82 5 6 chr1 6827955 6830193 -190365239 - L1_Mus2 LINE L1 0 6566 4333 3 637 432 300 67 4 chr1 6831436 6831674 -190363758 + L1MC LINE L1 2216 2468 -3678 3 637 354 123 0 0 chr1 6832013 6832070 -190363362 + (TCTCC)n Simple_repeat Simple_repeat 2 58 0 3 637 22 35 0 0 chr1 6833435 6833464 -190361968 + AT_rich Low_complexity Low_complexity 1 29 0 3 637 22 35 0 0 chr1 6833478 6833507 -190361925 + AT_rich Low_complexity Low_complexity 1 29 0 3 637 22 0 0 0 chr1 6833541 6833563 -190361869 + AT_rich Low_complexity Low_complexity 1 22 0 3 637 556 269 5 5 chr1 6834065 6834196 -190361236 + B3A SINE B2 2 132 -63 3 637 447 244 68 36 chr1 6834725 6834981 -190360451 + Lx7 LINE L1 7311 7692 -4 3 637 1956 182 102 3 chr1 6835184 6835558 -190359874 - MTC LTR MaLR -8 413 3 3 637 690 247 13 32 chr1 6837304 6837459 -190357973 - B4 SINE B4 -16 276 125 3 637 250 362 0 0 chr1 6839339 6839419 -190356013 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 637 468 210 208 10 chr1 6840501 6840698 -190354734 - MER44A DNA MER2_type -31 308 73 3 637 217 196 70 18 chr1 6840795 6840852 -190354580 + MIR3 SINE MIR 112 171 -37 3 637 261 185 15 0 chr1 6841198 6841263 -190354169 - Lx9 LINE L1 -38 7606 7541 4 637 381 348 7 43 chr1 6841335 6841476 -190353956 - B4A SINE B4 -156 136 1 4 637 181 331 114 67 chr1 6841938 6842342 -190353090 + L2 LINE L2 2386 2808 -611 4 637 286 351 0 0 chr1 6842357 6842434 -190352998 + ID4 SINE ID 6 82 -1 4 637 810 120 0 0 chr1 6842439 6842564 -190352868 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 4 637 730 255 6 18 chr1 6843522 6843686 -190351746 + B3A SINE B2 3 164 -34 4 637 293 229 9 79 chr1 6843840 6843954 -190351478 - L1M5 LINE L1 -483 5690 5585 4 637 430 328 78 81 chr1 6843963 6844285 -190351147 - MLT1A LTR MaLR -17 357 37 4 637 21 0 0 0 chr1 6844347 6844368 -190351064 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 243 0 0 0 chr1 6844377 6844404 -190351028 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 637 1157 62 0 14 chr1 6844404 6844541 -190350891 - B1_Mus1 SINE Alu -10 138 2 4 637 241 183 17 0 chr1 6845333 6845393 -190350039 + A-rich Low_complexity Low_complexity 5 65 0 4 637 297 0 0 0 chr1 6846445 6846478 -190348954 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 637 199 339 108 17 chr1 6846493 6846613 -190348819 - L2a LINE L2 -236 3190 3060 4 637 369 0 0 0 chr1 6848358 6848399 -190347033 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 637 450 143 0 0 chr1 6849843 6849920 -190345512 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 637 24 0 0 0 chr1 6850070 6850094 -190345338 + AT_rich Low_complexity Low_complexity 1 24 0 4 637 566 281 116 28 chr1 6854211 6854659 -190340773 + Lx7 LINE L1 7048 7678 -18 4 637 220 299 0 15 chr1 6855787 6855855 -190339577 + GA-rich Low_complexity Low_complexity 4 70 0 4 637 1120 49 0 0 chr1 6855860 6856003 -190339429 + B1_Mus1 SINE Alu 6 148 0 4 637 363 250 0 0 chr1 6856004 6856120 -190339312 + A-rich Low_complexity Low_complexity 1 116 0 4 637 299 269 115 0 chr1 6856409 6856487 -190338945 + PB1D10 SINE Alu 7 93 -24 4 637 392 197 134 0 chr1 6856817 6856944 -190338488 - MER110A LTR ERV1 -297 171 28 4 637 724 266 16 33 chr1 6857519 6857702 -190337730 + B3A SINE B2 1 180 -18 4 637 391 125 58 0 chr1 6859500 6859604 -190335828 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 4 637 327 25 0 0 chr1 6860832 6860872 -190334560 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 637 325 260 59 20 chr1 6860909 6861011 -190334421 - MLT1B LTR MaLR -265 125 20 4 637 735 274 45 4 chr1 6861172 6861436 -190333996 + L1MA9 LINE L1 5362 5636 -676 4 637 377 285 258 70 chr1 6861455 6861757 -190333675 - ORR1E LTR MaLR 0 359 1 4 637 1382 223 59 0 chr1 6861766 6862089 -190333343 + Lx7 LINE L1 6987 7328 -368 4 637 231 61 0 0 chr1 6862092 6862125 -190333307 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 637 254 208 159 19 chr1 6862207 6862271 -190333161 + Lx7 LINE L1 7511 7574 -122 4 637 576 0 0 0 chr1 6862271 6862335 -190333097 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 637 254 208 159 19 chr1 6862335 6862427 -190333005 + Lx7 LINE L1 7575 7688 -8 4 637 1914 209 80 9 chr1 6862423 6862873 -190332559 - Lx6 LINE L1 0 7460 6979 4 637 1109 150 16 5 chr1 6862896 6863084 -190332348 - B2_Mm2 SINE B2 -4 191 2 4 637 3715 198 19 28 chr1 6863094 6863875 -190331557 - Lx2B LINE L1 -1 6999 6226 4 637 509 260 47 16 chr1 6864260 6864389 -190331043 - ETnERV2-int LTR ERVK -204 7202 7070 4 637 484 219 8 16 chr1 6864390 6864511 -190330921 - Lx2B LINE L1 -766 6234 6115 4 637 860 148 19 6 chr1 6864525 6864681 -190330751 + L1_Mur2 LINE L1 4121 4278 -1599 4 637 1280 201 92 16 chr1 6864674 6864988 -190330444 - Lx6 LINE L1 -464 6996 6659 4 637 1215 237 23 27 chr1 6864998 6865297 -190330135 + Lx6 LINE L1 6353 6650 -810 4 637 300 283 70 34 chr1 6865330 6865602 -190329830 + L1MA9 LINE L1 5653 5933 -367 4 637 252 0 0 0 chr1 6866138 6866166 -190329266 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 637 573 324 7 7 chr1 6866166 6866303 -190329129 - RSINE1 SINE B4 -28 137 1 4 637 510 158 0 0 chr1 6866394 6866476 -190328956 + MT2A LTR ERVL 1 82 -451 4 637 396 0 0 0 chr1 6866476 6866520 -190328912 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 4 637 421 286 124 50 chr1 6866521 6866791 -190328641 - MTD LTR MaLR -58 349 48 4 637 451 155 10 20 chr1 6866817 6866916 -190328516 + GA-rich Low_complexity Low_complexity 3 100 0 4 637 2575 117 46 0 chr1 6866923 6867333 -190328099 + L1VL2 LINE L1 312 740 -5595 4 637 1214 236 39 55 chr1 6867333 6867642 -190327790 + MT2A LTR ERVL 133 436 -97 4 637 387 0 0 0 chr1 6867660 6867703 -190327729 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 637 450 0 0 0 chr1 6867706 6867756 -190327676 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 637 544 316 74 18 chr1 6867771 6868284 -190327148 + L1_Rod LINE L1 5099 5702 -487 4 637 5113 129 28 8 chr1 6868413 6869829 -190325603 + L1Md_F LINE L1 569 2014 -1803 4 637 7542 68 1 1 chr1 6869827 6871153 -190324279 + L1_Mus2 LINE L1 5240 6566 0 4 637 335 189 62 62 chr1 6871153 6871283 -190324149 + L1MA4 LINE L1 5753 5882 -418 4 637 350 341 96 26 chr1 6871584 6871813 -190323619 + L1MC4a LINE L1 5660 5904 -1978 4 637 267 161 18 0 chr1 6872170 6872226 -190323206 - MER92C LTR ERV1 -7 547 491 4 637 3496 126 74 0 chr1 6872711 6873490 -190321942 + L1VL2 LINE L1 311 1162 -2453 4 637 13565 151 22 5 chr1 6873516 6876963 -190318469 + Lx LINE L1 3170 6653 -1 4 637 2237 175 122 17 chr1 6877607 6878074 -190317358 + RMER20A LTR ERVK 1 516 0 4 637 208 244 0 0 chr1 6879393 6879438 -190315994 + GA-rich Low_complexity Low_complexity 2 46 0 4 637 377 39 20 0 chr1 6879441 6879492 -190315940 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 4 637 2197 108 7 117 chr1 6881595 6882056 -190313376 - RMER17C LTR ERVK 0 410 1 4 637 554 299 15 0 chr1 6882330 6882467 -190312965 + B1_Mur1 SINE Alu 2 140 -9 4 637 21 95 0 0 chr1 6882476 6882539 -190312893 + AT_rich Low_complexity Low_complexity 1 63 0 4 637 624 189 348 10 chr1 6882815 6883084 -190312348 + ORR1C2 LTR MaLR 1 383 -1 4 637 23 0 0 0 chr1 6884158 6884181 -190311251 + AT_rich Low_complexity Low_complexity 1 23 0 4 637 792 283 19 14 chr1 6884190 6884405 -190311027 + B3 SINE B2 1 216 0 4 637 297 217 38 72 chr1 6884542 6884627 -190310805 - ID4 SINE ID -67 85 4 4 637 370 274 2 25 chr1 6884658 6884773 -190310659 + B1F SINE Alu 1 109 -8 4 637 411 266 70 70 chr1 6885431 6885763 -190309669 - MT2A LTR ERVL 0 560 169 4 637 1452 58 16 5 chr1 6885766 6885957 -190309475 - B2_Mm2 SINE B2 -2 193 1 4 637 712 150 254 0 chr1 6885985 6886198 -190309234 - Lx9 LINE L1 0 7644 7378 4 637 5007 244 74 16 chr1 6886205 6887394 -190308038 - Lx6 LINE L1 -39 7421 6177 4 637 456 19 0 0 chr1 6887394 6887447 -190307985 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 637 5007 244 74 16 chr1 6887447 6887659 -190307773 - Lx6 LINE L1 -1284 6176 5938 4 637 1062 186 41 0 chr1 6887657 6887878 -190307554 - Lx6 LINE L1 -67 5813 5584 4 637 752 69 0 0 chr1 6887885 6887986 -190307446 - B1_Mus2 SINE Alu 0 147 47 4 637 1746 168 24 0 chr1 6887986 6888326 -190307106 - Lx6 LINE L1 -285 5595 5248 4 637 1982 123 98 50 chr1 6888365 6888723 -190306709 + RLTR9B2 LTR ERVK 1 375 -45 4 637 2514 197 79 116 chr1 6888961 6889709 -190305723 - RMER21A LTR ERV1 -207 740 21 4 637 230 156 0 0 chr1 6889727 6889759 -190305673 - RMER21A LTR ERV1 -915 32 1 4 637 244 320 12 71 chr1 6889762 6889846 -190305586 - RMER4B LTR ERVK -162 423 345 4 637 5478 206 28 7 chr1 6889846 6890885 -190304547 - RodERV21-int LTR ERV1 -165 4826 3766 4 637 2057 189 11 13 chr1 6891432 6891812 -190303620 - Lx LINE L1 -10 6644 6266 4 637 183 42 0 0 chr1 6891847 6891871 -190303561 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 637 636 153 245 0 chr1 6891877 6892040 -190303392 - Lx LINE L1 -1 6653 6451 4 637 1278 87 11 11 chr1 6892053 6892279 -190303153 - L1_Mus3 LINE L1 0 6638 6451 4 637 428 274 115 62 chr1 6892514 6892740 -190302692 - MYSERV6-int LTR ERVK -1858 7101 6864 4 637 3884 232 59 31 chr1 6893074 6894063 -190301369 - RodERV21-int LTR ERV1 -3971 1020 5 4 637 658 242 86 38 chr1 6894122 6894332 -190301100 - RMER21B LTR ERV1 -277 565 346 4 637 1702 139 86 94 chr1 6894868 6895250 -190300182 + ORR1B1 LTR MaLR 16 394 0 4 637 560 306 86 37 chr1 6896796 6897064 -190298368 - MLT1B LTR MaLR -30 360 80 4 637 201 279 14 29 chr1 6898253 6898323 -190297109 + CT-rich Low_complexity Low_complexity 3 71 0 4 637 447 291 25 25 chr1 6898916 6899159 -190296273 + L1MC1 LINE L1 5767 6009 -324 4 637 486 351 72 57 chr1 6899488 6899751 -190295681 + MLT1A0 LTR MaLR 88 354 -11 4 637 185 390 0 0 chr1 6899817 6899899 -190295533 - MER5A DNA MER1_type -81 108 27 4 637 1766 175 0 83 chr1 6900010 6900075 -190295357 + Lx6 LINE L1 4679 4741 -1139 4 637 849 199 0 22 chr1 6900075 6900214 -190295218 + B1_Mur3 SINE Alu 1 136 -13 4 637 207 0 0 0 chr1 6900219 6900242 -190295190 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 637 1766 175 0 83 chr1 6900242 6900544 -190294888 + Lx6 LINE L1 4742 5021 -859 4 637 244 200 11 11 chr1 6901198 6901289 -190294143 + GA-rich Low_complexity Low_complexity 2 92 0 4 637 380 236 24 31 chr1 6901366 6901493 -190293939 + L1VL2 LINE L1 68 193 -6142 4 637 28484 126 19 13 chr1 6901485 6906583 -190288849 + L1_Mus2 LINE L1 355 5463 -420 4 637 38846 14 1 7 chr1 6907089 6912479 -190282953 + L1Md_A LINE L1 232 5586 -297 4 637 9293 18 0 1 chr1 6912479 6913476 -190281956 + L1Md_A LINE L1 5587 6582 0 4 637 7057 95 4 5 chr1 6913718 6914840 -190280592 + L1_Mus2 LINE L1 5447 6566 0 4 637 189 0 0 0 chr1 6914843 6914864 -190280568 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 637 195 129 0 0 chr1 6914896 6914927 -190280505 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 4 637 189 74 0 0 chr1 6915212 6915239 -190280193 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 637 25 0 0 0 chr1 6915363 6915388 -190280044 + AT_rich Low_complexity Low_complexity 1 25 0 4 637 3919 218 34 49 chr1 6915390 6916841 -190278591 + Lx6 LINE L1 5006 6711 -749 4 637 1501 205 136 35 chr1 6917981 6918320 -190277112 - ORR1D1 LTR MaLR -1 373 1 4 637 285 328 50 21 chr1 6920297 6920437 -190274995 + Tigger7 DNA MER2_type 2308 2451 -40 4 637 299 268 41 89 chr1 6920399 6920522 -190274910 + PB1D10 SINE Alu 1 117 0 5 637 180 97 0 0 chr1 6920578 6920609 -190274823 + (T)n Simple_repeat Simple_repeat 1 31 0 5 637 387 214 14 0 chr1 6920816 6920886 -190274546 + ID4 SINE ID 2 72 -11 5 637 23 0 0 0 chr1 6922239 6922262 -190273170 + AT_rich Low_complexity Low_complexity 1 23 0 5 637 368 179 0 0 chr1 6922683 6922748 -190272684 - B1F1 SINE Alu -50 67 3 5 637 452 65 0 0 chr1 6923118 6923180 -190272252 + B1_Mm SINE Alu 86 147 0 5 637 929 162 0 6 chr1 6923180 6923354 -190272078 + GA-rich Low_complexity Low_complexity 1 173 0 5 637 544 166 23 0 chr1 6923674 6923849 -190271583 + G-rich Low_complexity Low_complexity 1 179 0 5 637 315 153 97 0 chr1 6923893 6923965 -190271467 + PB1D9 SINE Alu 42 120 0 5 637 482 119 0 47 chr1 6923978 6924084 -190271348 + GA-rich Low_complexity Low_complexity 3 103 0 5 637 1317 78 0 0 chr1 6924084 6924263 -190271169 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 5 637 2204 118 20 58 chr1 6924311 6924653 -190270779 - ORR1A4 LTR MaLR 0 329 1 5 637 370 324 95 101 chr1 6924662 6925009 -190270423 - ORR1D2 LTR MaLR -8 362 18 5 637 258 254 30 45 chr1 6925734 6925800 -190269632 + ID4 SINE ID 16 80 -3 5 637 568 305 8 0 chr1 6925814 6925942 -190269490 + RSINE1 SINE B4 4 132 -33 5 637 22 56 0 0 chr1 6926000 6926036 -190269396 + AT_rich Low_complexity Low_complexity 1 36 0 5 637 913 246 50 15 chr1 6926061 6926259 -190269173 - B3 SINE B2 -11 205 1 5 637 21 0 0 0 chr1 6926345 6926366 -190269066 + AT_rich Low_complexity Low_complexity 1 21 0 5 637 728 211 106 28 chr1 6926834 6927014 -190268418 + MT2A LTR ERVL 1 194 -339 5 637 4385 156 23 102 chr1 6927032 6927946 -190267486 + RMER21B LTR ERV1 1 842 0 5 637 588 210 323 0 chr1 6927957 6928124 -190267308 + MT2A LTR ERVL 242 462 -71 5 637 414 0 0 0 chr1 6928132 6928178 -190267254 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 637 255 152 0 0 chr1 6928442 6928488 -190266944 + (CATA)n Simple_repeat Simple_repeat 4 49 0 5 637 219 264 24 40 chr1 6928523 6928649 -190266783 + (CATA)n Simple_repeat Simple_repeat 2 125 0 5 637 1708 250 21 0 chr1 6928767 6928998 -190266434 + RLTR14 LTR ERV1 3 237 -145 5 637 432 0 0 0 chr1 6928998 6929046 -190266386 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 637 1708 250 21 0 chr1 6929046 6929186 -190266246 + RLTR14 LTR ERV1 238 380 -2 5 637 235 281 35 28 chr1 6929186 6929329 -190266103 + (CATA)n Simple_repeat Simple_repeat 4 147 0 5 637 219 295 24 82 chr1 6929843 6929928 -190265504 - ID SINE ID -141 83 4 5 637 360 323 38 23 chr1 6930954 6931087 -190264345 - RSINE1 SINE B4 -21 144 10 5 637 799 241 118 0 chr1 6931080 6931283 -190264149 - B4A SINE B4 -64 228 2 5 637 1269 68 0 0 chr1 6931810 6931957 -190263475 + B1_Mus1 SINE Alu 2 148 0 5 637 1272 166 9 18 chr1 6933105 6933332 -190262100 + URR1B DNA MER1_type 1 225 0 5 637 1578 189 85 80 chr1 6933820 6934183 -190261249 + Lx7 LINE L1 7040 7404 -292 5 637 334 215 110 40 chr1 6934387 6934620 -190260812 + Lx7 LINE L1 7325 7696 0 5 637 645 206 49 49 chr1 6934629 6934772 -190260660 + B3A SINE B2 1 143 -55 5 637 288 143 0 0 chr1 6935611 6935667 -190259765 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 637 589 266 0 137 chr1 6935746 6935929 -190259503 - RSINE1 SINE B4 0 165 8 5 637 942 222 115 65 chr1 6936033 6936432 -190259000 + L1Md_F LINE L1 322 740 -5779 5 637 1440 122 18 13 chr1 6936431 6936656 -190258776 - L1_Mm LINE L1 -926 4957 4732 5 637 26385 56 9 1 chr1 6936649 6940643 -190254789 - L1Md_F2 LINE L1 -9 6573 2544 5 637 20959 116 29 27 chr1 6940639 6944304 -190251128 - L1_Mm LINE L1 -952 4931 1318 5 637 291 276 10 0 chr1 6944329 6944427 -190251005 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 637 21 0 0 0 chr1 6944441 6944462 -190250970 + AT_rich Low_complexity Low_complexity 1 21 0 5 637 494 102 50 8 chr1 6944518 6944637 -190250795 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 637 484 256 6 99 chr1 6944650 6944832 -190250600 + MTEa LTR MaLR 207 371 -8 5 637 2667 312 109 88 chr1 6944843 6944987 -190250445 + MTEa-int LTR MaLR 2 174 -1406 5 637 743 293 111 89 chr1 6944987 6945358 -190250074 + MTEa LTR MaLR 1 379 0 5 637 2667 312 109 88 chr1 6945358 6946243 -190249189 + MTEa-int LTR MaLR 175 1065 -515 5 637 1717 192 21 72 chr1 6946243 6946378 -190249054 + ORR1B2 LTR MaLR 1 124 -243 5 637 1400 23 103 0 chr1 6946378 6946396 -190249036 - B2_Mm1a SINE B2 0 193 176 5 637 315 0 0 0 chr1 6946396 6946431 -190249001 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 637 1400 23 103 0 chr1 6946431 6946586 -190248846 - B2_Mm1a SINE B2 -18 175 3 5 79 1717 192 21 72 chr1 6946586 6946837 -190248595 + ORR1B2 LTR MaLR 125 367 0 5 638 2667 312 109 88 chr1 6946837 6947350 -190248082 + MTEa-int LTR MaLR 1066 1578 -2 5 638 611 345 102 30 chr1 6947352 6947657 -190247775 + MTEa LTR MaLR 1 327 -52 5 638 492 287 62 14 chr1 6947671 6947978 -190247454 + Lx7 LINE L1 417 716 -7012 5 638 9361 174 50 28 chr1 6947966 6948957 -190246475 + Lx7 LINE L1 3425 4430 -1450 5 638 360 0 0 0 chr1 6948957 6948997 -190246435 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 638 9361 174 50 28 chr1 6948997 6949831 -190245601 + Lx7 LINE L1 4431 5296 -584 5 638 2965 36 0 64 chr1 6949831 6950221 -190245211 + RLTR10B2 LTR ERVK 1 365 0 5 638 9361 174 50 28 chr1 6950221 6950600 -190244832 + Lx7 LINE L1 5297 5679 -201 5 638 486 269 121 5 chr1 6950615 6950813 -190244619 - MER2 DNA MER2_type -124 221 1 5 638 1040 210 0 20 chr1 6950943 6951142 -190244290 + MTC LTR MaLR 1 195 -226 5 638 995 244 51 65 chr1 6951158 6951551 -190243881 - MT2B LTR ERVL 0 601 187 5 638 1077 92 0 0 chr1 6951589 6951730 -190243702 + B1_Mm SINE Alu 5 145 -2 5 638 263 133 0 85 chr1 6951731 6951813 -190243619 + A-rich Low_complexity Low_complexity 1 75 0 5 638 624 231 0 24 chr1 6951813 6951937 -190243495 - MT2B LTR ERVL -412 121 1 5 638 1458 70 37 0 chr1 6951949 6952136 -190243296 + B2_Mm2 SINE B2 2 195 0 5 638 649 309 17 22 chr1 6952136 6952309 -190243123 + MTC LTR MaLR 206 378 -43 5 638 314 109 22 0 chr1 6952303 6952349 -190243083 - tRNA-Ile-ATA tRNA tRNA -29 48 2 5 638 324 183 33 0 chr1 6952351 6952411 -190243021 + MTC LTR MaLR 358 419 0 5 638 600 340 59 52 chr1 6953011 6953281 -190242151 + B4 SINE B4 4 275 -17 5 638 755 269 25 21 chr1 6953361 6953636 -190241796 + Lx7 LINE L1 5614 5893 -745 5 638 3321 282 77 17 chr1 6954171 6955359 -190240073 + Lx8 LINE L1 6213 7472 -1 5 638 758 211 55 5 chr1 6955425 6955625 -190239807 + L1M2 LINE L1 5567 5776 -524 5 638 2174 172 45 5 chr1 6955652 6956049 -190239383 - MTC LTR MaLR -8 413 1 5 638 296 217 0 92 chr1 6956127 6956203 -190239229 - ID_B1 SINE B4 -62 162 94 5 638 386 263 0 0 chr1 6956140 6956216 -190239216 - B1_Mur4 SINE Alu -74 76 1 5 638 576 225 241 6 chr1 6956239 6956409 -190239023 - B3 SINE B2 -6 210 1 5 638 1839 234 22 27 chr1 6956580 6956985 -190238447 - MTD LTR MaLR -16 403 1 5 638 198 0 0 0 chr1 6957847 6957869 -190237563 + (A)n Simple_repeat Simple_repeat 1 22 0 5 638 426 257 152 42 chr1 6958109 6958165 -190237267 + MLT2B4 LTR ERVL 3 78 -478 5 638 2324 110 3 0 chr1 6958165 6958491 -190236941 + ORR1A2 LTR MaLR 1 327 0 5 638 426 257 152 42 chr1 6958491 6958625 -190236807 + MLT2B4 LTR ERVL 79 214 -342 5 638 340 294 0 38 chr1 6958682 6958788 -190236644 + MLT2B4 LTR ERVL 444 545 -15 5 638 432 0 0 0 chr1 6959318 6959366 -190236066 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 638 1491 201 166 0 chr1 6959631 6959944 -190235488 - ORR1B2 LTR MaLR 0 367 3 5 638 437 295 32 32 chr1 6959970 6960096 -190235336 + PB1 SINE Alu 1 126 -1 5 638 735 305 79 76 chr1 6960100 6960359 -190235073 + B4A SINE B4 13 273 -19 5 638 1578 163 57 128 chr1 6960359 6960433 -190234999 - ORR1C1 LTR MaLR 0 378 313 5 638 995 152 0 6 chr1 6960433 6960612 -190234820 + GA-rich Low_complexity Low_complexity 1 178 0 5 638 1578 163 57 128 chr1 6960612 6960944 -190234488 - ORR1C1 LTR MaLR -66 312 1 5 638 735 305 79 76 chr1 6960944 6960961 -190234471 + B4A SINE B4 274 290 -2 5 638 232 324 19 19 chr1 6960989 6961096 -190234336 - MER5A DNA MER1_type -56 133 27 5 638 321 306 67 56 chr1 6961477 6961567 -190233865 - PB1D7 SINE Alu -21 96 6 5 638 537 255 43 67 chr1 6961642 6961806 -190233626 + ID_B1 SINE B4 64 223 -1 5 638 2000 273 18 38 chr1 6962268 6962827 -190232605 + RLTR18 LTR ERVK 69 616 0 5 638 26 0 0 0 chr1 6963653 6963679 -190231753 + AT_rich Low_complexity Low_complexity 1 26 0 5 638 606 28 0 0 chr1 6964399 6964471 -190230961 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 638 521 254 50 36 chr1 6964733 6964872 -190230560 - RSINE1 SINE B4 -4 161 21 5 638 1017 291 3 67 chr1 6965251 6965564 -190229868 - ORR1E LTR MaLR -5 354 62 5 638 684 326 104 44 chr1 6965651 6965921 -190229511 + B4 SINE B4 7 292 0 5 638 1879 280 154 40 chr1 6966099 6966232 -190229200 + L1MB1 LINE L1 2553 2675 -3465 5 638 238 250 31 0 chr1 6966232 6966296 -190229136 - ID4_ SINE ID -16 67 2 5 638 1879 280 154 40 chr1 6966296 6967956 -190227476 + L1MB1 LINE L1 2676 4550 -1590 5 638 813 127 24 8 chr1 6968008 6968135 -190227297 - B1_Mm SINE Alu -9 138 10 5 638 1486 59 16 0 chr1 6968149 6968336 -190227096 - B2_Mm2 SINE B2 -5 190 1 5 638 855 268 153 10 chr1 6968352 6968868 -190226564 + L1MB1 LINE L1 4619 5208 -932 5 638 489 295 71 16 chr1 6968903 6969158 -190226274 + L1MB1 LINE L1 5305 5573 -610 5 638 222 261 78 78 chr1 6969295 6969436 -190225996 + B1F SINE Alu 9 149 0 5 638 340 280 11 67 chr1 6969462 6969648 -190225784 + L1MB1 LINE L1 5627 5800 -356 5 638 269 309 23 16 chr1 6969694 6969822 -190225610 + L1MB1 LINE L1 6033 6161 -28 5 638 380 218 65 56 chr1 6969840 6969947 -190225485 + MER90 LTR ERV1 187 294 -281 5 638 3157 189 134 30 chr1 6970478 6971188 -190224244 + RMER13B LTR ERVK 1 784 -124 5 638 291 85 0 0 chr1 6971510 6971557 -190223875 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 638 183 114 0 0 chr1 6971564 6971599 -190223833 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 638 584 276 63 29 chr1 6971599 6971755 -190223677 - B3A SINE B2 -18 180 15 5 638 388 222 24 36 chr1 6972391 6972475 -190222957 - PB1D9 SINE Alu -36 84 2 5 638 483 18 0 0 chr1 6972678 6972734 -190222698 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 638 257 307 93 0 chr1 6972954 6973029 -190222403 + ID SINE ID 1 82 -142 5 638 283 310 131 8 chr1 6973063 6973193 -190222239 + MT2A LTR ERVL 1 146 -387 5 638 1477 222 60 45 chr1 6973085 6973420 -190222012 + MTE2b LTR MaLR 37 376 -3 5 638 367 202 31 92 chr1 6973420 6973502 -190221930 + ID_B1 SINE B4 149 224 0 5 638 24 0 0 0 chr1 6973580 6973604 -190221828 + AT_rich Low_complexity Low_complexity 1 24 0 5 638 566 191 0 0 chr1 6973640 6973729 -190221703 + B1_Mur4 SINE Alu 6 94 -56 5 638 290 331 21 76 chr1 6973644 6973788 -190221644 + B4 SINE B4 94 229 -63 6 638 317 213 0 13 chr1 6973795 6973871 -190221561 + L1_Mur3 LINE L1 5188 5262 -618 6 638 3142 222 30 57 chr1 6973924 6974056 -190221376 + L1_Mus4 LINE L1 419 558 -6099 6 638 4339 133 68 82 chr1 6974056 6974971 -190220461 - RLTR13D6 LTR ERVK 0 902 1 6 638 18206 217 31 63 chr1 6974971 6975687 -190219745 + L1_Mus4 LINE L1 559 1257 -5400 6 638 1155 75 0 26 chr1 6975687 6975828 -190219604 + B1_Mus2 SINE Alu 1 141 -6 6 638 279 0 0 0 chr1 6975828 6975859 -190219573 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 6 638 180 0 0 0 chr1 6975875 6975895 -190219537 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 638 18206 157 44 136 chr1 6975895 6978291 -190217141 + L1_Mus4 LINE L1 1265 3580 -2303 6 638 2621 100 5 0 chr1 6978291 6978661 -190216771 + L1_Mus3 LINE L1 6265 6636 -2 6 638 18206 157 44 136 chr1 6978661 6979101 -190216331 + L1_Mus4 LINE L1 3581 3685 -2198 6 638 1194 68 0 0 chr1 6979101 6979248 -190216184 - B1_Mm SINE Alu 0 147 1 6 638 18206 157 44 136 chr1 6979248 6979842 -190215590 + L1_Mus4 LINE L1 3686 4275 -1608 6 638 6170 76 8 1 chr1 6979842 6980645 -190214787 - RLTR13C2 LTR ERVK 0 808 1 6 638 18206 137 31 78 chr1 6980645 6983031 -190212401 + L1_Mus4 LINE L1 4276 6629 -7 6 638 2121 185 129 13 chr1 6983027 6983740 -190211692 + Lx5 LINE L1 5228 6021 -1029 6 638 3012 91 0 14 chr1 6983740 6984153 -190211279 - MTB_Mm LTR MaLR 0 407 1 6 638 5979 137 24 70 chr1 6984155 6985304 -190210128 - MTB_Mm-int LTR MaLR -2 1096 1 6 638 831 163 17 9 chr1 6985304 6985456 -190209976 - MTB_Mm LTR MaLR 0 407 220 6 638 862 111 28 74 chr1 6985456 6985632 -190209800 + Lx5 LINE L1 5646 5813 -1237 6 638 281 256 35 35 chr1 6986154 6986239 -190209193 + ID SINE ID 1 85 -139 6 638 324 228 123 23 chr1 6986253 6986383 -190209049 + L1MC4 LINE L1 7457 7599 -443 6 638 685 312 44 30 chr1 6986505 6987061 -190208371 + L1M2 LINE L1 4736 5324 -556 6 638 1246 99 21 27 chr1 6987061 6987247 -190208185 + B2_Mm1t SINE B2 1 185 -8 6 638 621 314 89 52 chr1 6987247 6987299 -190208133 + L1M2 LINE L1 5325 5374 -506 6 638 3465 28 2 0 chr1 6987299 6987694 -190207738 - MTA_Mm LTR MaLR 0 396 1 6 638 621 314 89 52 chr1 6987694 6987735 -190207697 + L1M2 LINE L1 5375 5410 -470 6 638 1019 198 43 0 chr1 6987785 6987972 -190207460 + B3 SINE B2 16 210 -6 6 638 1313 65 6 0 chr1 6988056 6988226 -190207206 + B2_Mm1t SINE B2 1 171 -22 6 638 1269 150 180 14 chr1 6988565 6988843 -190206589 - RLTR23 LTR ERV1 -85 345 22 6 638 243 284 155 16 chr1 6988891 6989020 -190206412 - MamGypLTR2c LTR Gypsy -28 1040 894 6 638 24 0 0 0 chr1 6989056 6989080 -190206352 + AT_rich Low_complexity Low_complexity 1 24 0 6 638 320 228 137 30 chr1 6989156 6989287 -190206145 - MTC-int LTR MaLR -4 1254 1110 6 638 747 206 0 0 chr1 6989837 6989997 -190205435 + CT-rich Low_complexity Low_complexity 4 163 0 6 638 210 133 0 0 chr1 6990002 6990032 -190205400 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 6 638 225 0 0 0 chr1 6990418 6990443 -190204989 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 638 535 273 196 6 chr1 6990896 6991069 -190204363 - B3 SINE B2 -9 207 2 6 638 324 319 24 87 chr1 6991094 6991221 -190204211 + B1_Mur4 SINE Alu 1 119 -31 6 638 580 231 0 36 chr1 6991114 6991226 -190204206 + ID_B1 SINE B4 94 201 -23 6 638 301 272 15 6 chr1 6991666 6991747 -190203685 + B4A SINE B4 78 157 -67 6 638 203 188 62 0 chr1 6991953 6992001 -190203431 + CT-rich Low_complexity Low_complexity 4 54 0 6 638 204 97 0 0 chr1 6992021 6992052 -190203380 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 638 630 99 0 0 chr1 6992429 6992520 -190202912 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 6 638 293 139 0 0 chr1 6992520 6992563 -190202869 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 638 2055 176 79 0 chr1 6992565 6992958 -190202474 - RMER10A LTR ERVL -18 424 1 6 638 684 56 0 0 chr1 6992973 6993062 -190202370 + (CATA)n Simple_repeat Simple_repeat 2 90 0 6 638 1596 210 103 53 chr1 6993121 6993338 -190202094 + MTC LTR MaLR 1 202 -219 6 638 180 77 0 0 chr1 6993338 6993364 -190202068 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 638 1596 210 103 53 chr1 6993364 6993543 -190201889 + MTC LTR MaLR 203 417 -4 6 638 31 26 0 0 chr1 6993564 6993602 -190201830 + AT_rich Low_complexity Low_complexity 1 38 0 6 638 228 214 33 82 chr1 6993797 6993858 -190201574 + B1F SINE Alu 85 142 -7 6 638 680 243 119 0 chr1 6994002 6994187 -190201245 + B3 SINE B2 4 210 -6 6 638 230 73 0 24 chr1 6994361 6994403 -190201029 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 6 638 479 238 50 0 chr1 6994551 6994652 -190200780 - ID_B1 SINE B4 0 224 119 6 638 793 154 0 0 chr1 6994654 6994775 -190200657 - URR1B DNA MER1_type 0 225 105 6 638 2452 210 79 20 chr1 6994775 6994873 -190200559 - RLTR20B3 LTR ERVK 0 577 473 6 638 299 25 25 0 chr1 6994873 6994913 -190200519 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 638 2452 210 79 20 chr1 6994913 6995359 -190200073 - RLTR20B3 LTR ERVK -105 472 2 6 638 5133 147 80 17 chr1 6995359 6995909 -190199523 - MYSERV16_I-int LTR ERVK 0 2326 1734 6 638 513 0 0 0 chr1 6995909 6995966 -190199466 + (TTG)n Simple_repeat Simple_repeat 3 59 0 6 638 5133 147 80 17 chr1 6995966 6996103 -190199329 - MYSERV16_I-int LTR ERVK -593 1733 1581 6 638 1144 133 40 0 chr1 6996103 6996276 -190199156 + B2_Mm2 SINE B2 2 181 -14 6 638 5133 147 80 17 chr1 6996276 6996685 -190198747 - MYSERV16_I-int LTR ERVK -746 1580 1162 6 638 297 77 0 0 chr1 6996690 6996729 -190198703 + B2_Mm2 SINE B2 2 40 -155 6 638 1148 82 0 0 chr1 6996731 6996878 -190198554 + B1_Mus1 SINE Alu 2 148 0 6 638 243 0 0 0 chr1 6996887 6996914 -190198518 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 638 969 59 0 0 chr1 6996916 6997035 -190198397 + B2_Mm2 SINE B2 36 154 -41 6 638 435 38 0 0 chr1 6997037 6997090 -190198342 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 6 638 604 153 51 7 chr1 6997090 6997228 -190198204 - MYSERV16_I-int LTR ERVK -1165 1161 1018 6 638 529 219 0 54 chr1 6997234 6997345 -190198087 - URR1B DNA MER1_type -121 104 1 6 638 1000 69 14 7 chr1 6997546 6997692 -190197740 + (TTCTC)n Simple_repeat Simple_repeat 4 150 0 6 638 398 167 151 32 chr1 6997703 6997796 -190197636 - B1F1 SINE Alu -8 141 38 6 638 308 279 35 43 chr1 6998662 6998769 -190196663 + PB1D10 SINE Alu 1 107 -10 6 638 632 36 12 0 chr1 6998769 6998852 -190196580 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 6 638 253 325 25 12 chr1 6998907 6998988 -190196444 + ID4 SINE ID 2 83 0 6 638 909 260 0 16 chr1 6999326 6999510 -190195922 + B3 SINE B2 15 195 -21 6 638 251 314 11 95 chr1 6999590 6999685 -190195747 + B4 SINE B4 10 96 -196 6 638 717 276 50 20 chr1 6999696 6999896 -190195536 + B4 SINE B4 83 288 -4 6 638 22 0 0 0 chr1 7000000 7000022 -190195410 + AT_rich Low_complexity Low_complexity 1 22 0 1 638 821 62 9 0 chr1 7000072 7000184 -190195248 + B1_Mus2 SINE Alu 35 147 0 2 638 588 143 0 0 chr1 7000185 7000283 -190195149 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 3 638 314 260 40 30 chr1 7000289 7000388 -190195044 + ID_B1 SINE B4 116 215 -9 4 638 369 291 117 90 chr1 7000484 7000896 -190194536 - RMER10A LTR ERVL -19 423 1 5 638 2528 137 40 40 chr1 7000991 7001394 -190194038 + RLTR9D LTR ERVK 1 403 0 6 638 7840 206 89 68 chr1 7001396 7005016 -190190416 + ETnERV2-int LTR ERVK 3 4098 -3308 6 638 1125 97 0 0 chr1 7005024 7005178 -190190254 + ETnERV2-int LTR ERVK 5634 5787 -1619 6 638 268 180 0 123 chr1 7005178 7005235 -190190197 + RLTR9D LTR ERVK 354 403 0 7 638 323 333 16 24 chr1 7005250 7005376 -190190056 + ID_B1 SINE B4 100 224 0 8 638 274 224 16 65 chr1 7005654 7005716 -190189716 - ID4_ SINE ID -3 80 22 9 638 825 166 14 14 chr1 7005768 7005915 -190189517 - B1_Mus1 SINE Alu 0 148 2 1 638 978 222 54 5 chr1 7005996 7006200 -190189232 + B3 SINE B2 2 215 -1 1 638 220 304 118 0 chr1 7006380 7006482 -190188950 + MIRb SINE MIR 119 232 -36 1 638 379 103 52 0 chr1 7006973 7007031 -190188401 + RSINE1 SINE B4 59 119 -46 1 638 557 14 14 0 chr1 7007047 7007117 -190188315 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 638 1014 201 53 67 chr1 7007117 7007400 -190188032 - BGLII_B LTR ERVK -162 279 1 1 638 899 122 0 279 chr1 7007459 7007721 -190187711 - B2_Mm2 SINE B2 -4 191 3 1 638 398 216 110 30 chr1 7008656 7008672 -190186760 - PB1D7 SINE Alu 0 120 99 1 638 477 0 0 0 chr1 7008672 7008725 -190186707 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 638 407 241 36 0 chr1 7008725 7008808 -190186624 - B1F SINE Alu -51 98 13 1 638 234 296 83 36 chr1 7008733 7008817 -190186615 - B4A SINE B4 -119 173 86 2 638 885 228 77 15 chr1 7009314 7009510 -190185922 + ORR1D1 LTR MaLR 167 374 0 2 638 656 258 0 52 chr1 7010192 7010327 -190185105 + B1_Mur1 SINE Alu 2 129 -20 2 638 707 268 123 56 chr1 7010534 7010925 -190184507 - RMER10A LTR ERVL -25 417 1 2 638 315 325 52 9 chr1 7010933 7011048 -190184384 - RMER5 LTR ERV1 -194 340 221 2 638 2085 130 6 3 chr1 7011098 7011415 -190184017 - ORR1A4 LTR MaLR -11 318 1 2 638 307 277 66 14 chr1 7011539 7011648 -190183784 + PB1D7 SINE Alu 5 119 -8 2 638 670 270 56 59 chr1 7011895 7012198 -190183234 - RMER10A LTR ERVL -19 423 122 2 638 500 80 40 0 chr1 7012252 7012327 -190183105 + Lx3B LINE L1 6890 6967 -6 2 638 33 0 0 0 chr1 7012343 7012376 -190183056 + AT_rich Low_complexity Low_complexity 1 33 0 2 638 239 200 17 83 chr1 7012388 7012448 -190182984 - RMER10A LTR ERVL -369 73 18 2 638 185 119 0 23 chr1 7012532 7012575 -190182857 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 3 638 225 0 0 0 chr1 7012936 7012961 -190182471 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 638 528 16 0 0 chr1 7012961 7013021 -190182411 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 638 900 0 0 0 chr1 7013392 7013492 -190181940 + (TTC)n Simple_repeat Simple_repeat 1 100 0 3 638 7717 137 40 28 chr1 7013498 7014957 -190180475 - Lx4B LINE L1 -246 6812 5317 3 638 1230 58 0 0 chr1 7014957 7015096 -190180336 + B1_Mm SINE Alu 1 139 -8 3 638 246 95 0 0 chr1 7015096 7015138 -190180294 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 3 638 7717 131 19 47 chr1 7015138 7015870 -190179562 - Lx4B LINE L1 -561 5316 4601 3 638 901 172 0 0 chr1 7015874 7016019 -190179413 - Lx4B LINE L1 -6079 1007 863 3 638 2227 60 26 16 chr1 7016019 7016323 -190179109 + IAPLTR2b LTR ERVK 1 307 -20 3 638 578 174 258 0 chr1 7016341 7016473 -190178959 - Lx4B LINE L1 -6219 867 702 3 638 24 0 0 0 chr1 7016496 7016520 -190178912 + AT_rich Low_complexity Low_complexity 1 24 0 3 638 584 281 20 7 chr1 7017829 7017976 -190177456 - B1_Mur2 SINE Alu 0 149 1 3 638 822 220 87 51 chr1 7018090 7018286 -190177146 - B3 SINE B2 -6 210 8 4 638 1008 76 61 0 chr1 7019240 7019356 -190176076 + B1_Mus1 SINE Alu 1 116 -32 4 638 225 0 0 0 chr1 7019356 7019381 -190176051 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 638 1008 76 61 0 chr1 7019381 7019395 -190176037 + B1_Mus1 SINE Alu 117 137 -11 4 638 321 47 0 0 chr1 7019395 7019438 -190175994 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 638 931 235 39 24 chr1 7019617 7019822 -190175610 - ID_B1 SINE B4 -16 208 1 4 638 915 296 21 21 chr1 7019887 7020173 -190175259 - B4A SINE B4 -4 288 3 4 638 4199 185 131 12 chr1 7020796 7020959 -190174473 - RLTR25B LTR ERVK 0 1028 811 4 638 380 107 27 0 chr1 7020959 7021034 -190174398 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 4 638 4199 185 131 12 chr1 7021034 7021784 -190173648 - RLTR25B LTR ERVK -218 810 7 4 638 375 315 27 0 chr1 7021779 7021890 -190173542 - RSINE1 SINE B4 -49 116 3 4 638 480 314 82 6 chr1 7022135 7022305 -190173127 + B3A SINE B2 1 183 -15 4 638 1321 21 7 0 chr1 7022339 7022484 -190172948 + B1_Mus2 SINE Alu 2 147 0 5 638 195 152 0 0 chr1 7022484 7022530 -190172902 + A-rich Low_complexity Low_complexity 1 46 0 5 638 801 234 7 7 chr1 7022546 7022692 -190172740 + B1_Mur3 SINE Alu 2 147 -2 5 638 1000 115 179 18 chr1 7022695 7022827 -190172605 + B2_Mm2 SINE B2 1 158 -37 5 638 434 18 0 18 chr1 7022827 7022883 -190172549 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 5 638 1000 115 179 18 chr1 7022883 7022918 -190172514 + B2_Mm2 SINE B2 159 195 0 5 638 1241 81 0 0 chr1 7022930 7023078 -190172354 + B1_Mus1 SINE Alu 1 148 0 5 638 714 47 38 0 chr1 7023110 7023216 -190172216 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 5 638 827 196 0 26 chr1 7024100 7024252 -190171180 - B1_Mur3 SINE Alu -1 148 1 5 638 315 278 107 66 chr1 7024522 7024811 -190170621 + Charlie1 DNA MER1_type 765 1065 -1716 5 638 1283 54 0 0 chr1 7024830 7024977 -190170455 + B1_Mm SINE Alu 1 147 0 5 638 231 114 0 0 chr1 7024979 7025014 -190170418 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6 638 308 123 118 44 chr1 7025296 7025364 -190170068 - MurSatRep1 Unknown Unknown -1845 292 220 6 638 349 292 21 10 chr1 7025474 7025571 -190169861 + B3 SINE B2 119 216 0 6 638 351 0 0 0 chr1 7025573 7025612 -190169820 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 638 330 26 0 0 chr1 7025612 7025651 -190169781 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 638 2068 87 10 3 chr1 7025658 7025970 -190169462 + ORR1A3-int LTR MaLR 803 1116 -847 6 638 1178 89 0 0 chr1 7028571 7028728 -190166704 + B2_Mm2 SINE B2 1 157 -38 6 638 428 0 0 19 chr1 7028728 7028781 -190166651 + (TAA)n Simple_repeat Simple_repeat 3 54 0 6 638 338 39 0 38 chr1 7028789 7028842 -190166590 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 638 526 320 75 10 chr1 7029215 7029414 -190166018 + ID_B1 SINE B4 5 216 -8 6 638 288 0 0 0 chr1 7029545 7029577 -190165855 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 638 723 81 0 0 chr1 7029577 7029676 -190165756 + (TG)n Simple_repeat Simple_repeat 2 100 0 7 638 27413 108 16 5 chr1 7029848 7034653 -190160779 - L1_Mus2 LINE L1 -1 6565 1710 7 638 791 78 9 0 chr1 7034711 7034827 -190160605 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 7 638 309 261 0 42 chr1 7035573 7035645 -190159787 - B1F2 SINE Alu -80 69 1 7 638 439 168 98 7 chr1 7035927 7036046 -190159386 - Lx3C LINE L1 0 6981 6856 7 638 1124 78 0 0 chr1 7036233 7036374 -190159058 + B1_Mus2 SINE Alu 5 145 -2 7 638 378 0 0 0 chr1 7036374 7036416 -190159016 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 7 638 627 164 0 0 chr1 7036446 7036550 -190158882 + Lx3C LINE L1 6871 6974 -2 7 638 1676 47 0 0 chr1 7036579 7036769 -190158663 + B2_Mm1t SINE B2 2 191 -2 7 638 22 0 0 0 chr1 7036770 7036792 -190158640 + AT_rich Low_complexity Low_complexity 1 22 0 8 638 29 0 0 0 chr1 7037695 7037724 -190157708 + AT_rich Low_complexity Low_complexity 1 29 0 8 638 248 329 14 0 chr1 7037729 7037799 -190157633 + PB1D10 SINE Alu 5 75 -42 8 638 549 254 21 48 chr1 7037825 7037970 -190157462 + B1F1 SINE Alu 3 143 -6 8 638 243 0 0 0 chr1 7037971 7037998 -190157434 + (TATAA)n Simple_repeat Simple_repeat 3 29 0 8 638 368 320 245 0 chr1 7038009 7038181 -190157251 + ID_B1 SINE B4 7 220 -4 8 638 244 330 41 31 chr1 7038223 7038320 -190157112 + B4 SINE B4 64 161 -131 8 638 606 167 0 0 chr1 7038321 7038423 -190157009 - ORR1B2 LTR MaLR 0 367 266 8 638 528 288 12 47 chr1 7038598 7038769 -190156663 + RSINE1 SINE B4 1 165 0 8 638 269 282 13 13 chr1 7039410 7039489 -190155943 - ID4 SINE ID -4 79 1 8 638 262 366 22 15 chr1 7039516 7039652 -190155780 - B1F SINE Alu -8 141 5 9 638 1422 95 21 0 chr1 7039964 7040154 -190155278 + B2_Mm2 SINE B2 1 194 -1 9 638 6521 58 13 55 chr1 7040299 7041142 -190154290 + RLTR13C2 LTR ERVK 1 808 0 9 638 486 251 264 0 chr1 7041179 7041342 -190154090 + ID_B1 SINE B4 18 223 -1 9 638 624 309 120 131 chr1 7041399 7042016 -190153416 + RLTR18B LTR ERVK 6 614 -2 9 638 255 331 89 15 chr1 7042393 7042504 -190152928 - B1F SINE Alu 0 149 29 9 638 552 250 51 77 chr1 7042504 7042699 -190152733 + RMER10A LTR ERVL 1 190 -252 9 638 1991 185 58 26 chr1 7042701 7043129 -190152303 + RMER10A LTR ERVL 1 442 0 9 638 1122 173 58 111 chr1 7043230 7043574 -190151858 - ORR1D1 LTR MaLR 0 374 49 9 638 586 160 0 0 chr1 7043806 7043906 -190151526 - ORR1D1 LTR MaLR -274 100 1 9 638 5278 106 16 18 chr1 7043997 7044794 -190150638 + RLTR45-int LTR ERVK 5276 6071 -1173 1 638 1769 117 47 0 chr1 7044808 7045065 -190150367 + ETnERV3-int LTR ERVK 5529 5797 -11 1 638 2360 215 85 89 chr1 7045074 7045815 -190149617 + RLTR13D2 LTR ERVK 1 738 -285 1 638 338 125 15 15 chr1 7045815 7045880 -190149552 + ETnERV2-int LTR ERVK 7342 7406 0 1 638 1782 136 47 13 chr1 7045880 7046179 -190149253 + RLTR9D LTR ERVK 1 309 -94 1 638 6464 59 1 0 chr1 7046179 7046977 -190148455 + L1Md_F2 LINE L1 4788 5586 -297 1 638 8298 59 7 4 chr1 7046978 7047970 -190147462 + L1Md_F2 LINE L1 5588 6582 0 1 638 710 147 0 18 chr1 7047984 7048095 -190147337 + RLTR9D LTR ERVK 295 403 0 1 638 598 239 159 18 chr1 7048226 7048396 -190147036 - B3A SINE B2 0 198 5 1 638 213 367 0 81 chr1 7048322 7048408 -190147024 - RSINE1 SINE B4 -86 79 1 1 638 679 245 7 14 chr1 7048421 7048566 -190146866 + B1_Mur2 SINE Alu 5 148 -1 1 638 433 242 80 10 chr1 7048660 7048760 -190146672 - PB1D9 SINE Alu -7 113 7 1 638 703 266 62 14 chr1 7048771 7048981 -190146451 - ID_B1 SINE B4 -3 221 2 1 638 288 346 45 63 chr1 7049115 7049337 -190146095 + L2a LINE L2 3209 3426 0 1 638 561 220 1 21 chr1 7049425 7049542 -190145890 + PB1D9 SINE Alu 6 118 -2 1 638 808 233 51 124 chr1 7049542 7049816 -190145616 + Lx9 LINE L1 6849 7102 -542 1 638 668 81 2 22 chr1 7050117 7050228 -190145204 - L1_Mur2 LINE L1 -986 4891 4782 1 638 1958 137 34 28 chr1 7050228 7050582 -190144850 - L1_Mur2 LINE L1 -1630 4247 3892 1 638 2193 126 132 38 chr1 7050620 7050990 -190144442 - RLTR44A LTR ERVK 0 405 1 1 638 5555 61 0 0 chr1 7050990 7051661 -190143771 - RLTR44-int LTR ERVK 0 2812 2142 1 638 4274 294 55 51 chr1 7051862 7056614 -190138818 - RLTR44-int LTR ERVK -2084 5497 656 1 638 598 159 9 18 chr1 7056794 7056903 -190138529 - RLTR44-int LTR ERVK -1831 981 874 1 638 379 120 0 0 chr1 7056913 7056963 -190138469 - RLTR44-int LTR ERVK -2756 56 7 1 638 2255 127 133 35 chr1 7056969 7057338 -190138094 - RLTR44A LTR ERVK 0 405 1 1 638 5899 156 16 11 chr1 7057338 7058408 -190137024 + L1_Mur1 LINE L1 2847 3921 -1965 1 638 180 135 0 0 chr1 7058453 7058490 -190136942 + (C)n Simple_repeat Simple_repeat 1 37 0 1 638 3299 198 69 68 chr1 7058690 7059289 -190136143 - RLTR25B LTR ERVK -134 894 315 1 638 342 0 0 0 chr1 7059289 7059327 -190136105 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 638 3299 198 69 68 chr1 7059327 7059620 -190135812 - RLTR25B LTR ERVK -714 314 1 1 638 506 239 104 7 chr1 7059739 7059874 -190135558 - B1_Mur2 SINE Alu -1 148 1 1 638 2332 137 147 3 chr1 7060053 7060435 -190134997 - RLTR9B LTR ERVK 0 437 1 1 638 693 269 0 7 chr1 7060504 7060650 -190134782 - B1_Mur1 SINE Alu -3 146 2 1 638 324 0 0 0 chr1 7061098 7061134 -190134298 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 638 8038 55 0 5 chr1 7061134 7062110 -190133322 - L1_Mus1 LINE L1 -10 6557 5587 1 638 410 286 81 22 chr1 7062512 7062648 -190132784 + ID_B1 SINE B4 81 224 0 1 638 1810 165 53 53 chr1 7062770 7063010 -190132422 - ORR1C1 LTR MaLR 0 378 126 1 638 4663 103 184 60 chr1 7063010 7063816 -190131616 + RMER17A2 LTR ERVK 1 906 0 1 638 1810 165 53 53 chr1 7063816 7063953 -190131479 - ORR1C1 LTR MaLR -253 125 1 1 638 1151 90 144 0 chr1 7063999 7064166 -190131266 - B2_Mm2 SINE B2 -1 194 4 1 638 2313 141 114 23 chr1 7064713 7065099 -190130333 - MTC LTR MaLR 0 421 1 1 638 182 37 37 0 chr1 7065356 7065383 -190130049 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 638 1221 56 7 0 chr1 7065385 7065527 -190129905 - B1_Mm SINE Alu -1 146 4 1 638 1629 240 133 70 chr1 7065536 7066245 -190129187 + RLTR40 LTR ERVK 50 802 -15 1 638 370 244 0 129 chr1 7066372 7066504 -190128928 + MT2B LTR ERVL 153 267 -334 1 638 675 225 14 14 chr1 7066392 7066536 -190128896 + B1_Mur2 SINE Alu 6 149 0 1 638 620 239 23 0 chr1 7066677 7066807 -190128625 + ID_B1 SINE B4 91 223 -1 1 638 555 285 88 5 chr1 7067037 7067231 -190128201 + MLT1A0 LTR MaLR 156 365 0 1 638 2676 182 107 35 chr1 7067624 7068194 -190127238 - RMER19C LTR ERVK 0 611 1 1 638 1100 93 13 0 chr1 7068278 7068560 -190126872 + MTA_Mm LTR MaLR 1 396 0 1 638 8490 81 8 6 chr1 7068560 7069655 -190125777 + MTA_Mm-int LTR MaLR 1 1098 0 1 638 1385 67 0 15 chr1 7069655 7069851 -190125581 + MTA_Mm LTR MaLR 1 193 -203 1 638 33304 74 2 0 chr1 7069851 7075033 -190120399 + L1Md_F2 LINE L1 394 5586 -297 1 638 8336 52 13 1 chr1 7075034 7076017 -190119415 + L1Md_F2 LINE L1 5588 6582 0 1 638 1700 37 14 0 chr1 7076022 7076237 -190119195 + MTA_Mm LTR MaLR 179 396 0 1 638 245 356 0 0 chr1 7076303 7076376 -190119056 - ID_B1 SINE B4 -9 215 143 1 638 627 251 33 16 chr1 7076411 7076593 -190118839 - B3 SINE B2 -4 212 28 1 638 438 219 14 168 chr1 7076613 7076756 -190118676 - B1_Mur2 SINE Alu -8 141 21 1 638 1247 82 0 0 chr1 7077411 7077558 -190117874 + B1_Mus1 SINE Alu 1 147 -1 1 638 233 284 107 13 chr1 7077653 7077728 -190117704 + B1F1 SINE Alu 4 85 -64 1 638 22 0 0 0 chr1 7077794 7077816 -190117616 + AT_rich Low_complexity Low_complexity 1 22 0 1 79 510 244 61 8 chr1 7077816 7077948 -190117484 - ID_B1 SINE B4 0 224 86 1 639 296 217 235 61 chr1 7078290 7078388 -190117044 - PB1D10 SINE Alu 0 117 3 1 639 406 309 48 0 chr1 7079875 7080001 -190115431 - ID_B1 SINE B4 -9 215 84 1 639 204 125 0 0 chr1 7081465 7081497 -190113935 + (CACCAT)n Simple_repeat Simple_repeat 5 36 0 1 639 3028 82 28 7 chr1 7082411 7083013 -190112419 - ORR1A1-int LTR MaLR -1357 435 2 1 639 2875 33 52 0 chr1 7083013 7083342 -190112090 - ORR1A1 LTR MaLR 0 346 1 1 639 462 18 0 0 chr1 7083492 7083547 -190111885 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 639 2411 89 101 13 chr1 7084246 7084657 -190110775 - RMER16 LTR ERVK 0 533 1 1 639 783 184 93 44 chr1 7085123 7085305 -190110127 - B2_Mm2 SINE B2 -4 191 1 1 639 755 169 23 2 chr1 7085337 7085474 -190109958 + B1_Mur2 SINE Alu 11 147 -1 1 639 297 252 139 80 chr1 7085939 7086090 -190109342 - LTR48 LTR ERV1 -621 166 7 1 639 970 248 75 50 chr1 7086976 7087256 -190108176 + B4A SINE B4 3 289 -3 1 639 249 186 68 0 chr1 7087259 7087318 -190108114 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 1 639 279 0 0 0 chr1 7087420 7087451 -190107981 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 639 277 245 0 0 chr1 7087473 7087526 -190107906 + ID_B1 SINE B4 171 223 -1 1 639 886 170 0 47 chr1 7087705 7087853 -190107579 - B1_Mus1 SINE Alu -6 142 2 1 639 24 0 0 0 chr1 7087927 7087951 -190107481 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 634 276 38 11 chr1 7087998 7088181 -190107251 - ID_B1 SINE B4 -4 220 33 1 639 234 0 0 0 chr1 7088182 7088208 -190107224 + (T)n Simple_repeat Simple_repeat 1 26 0 1 639 2402 65 0 0 chr1 7088235 7088541 -190106891 - ORR1A1 LTR MaLR -40 306 1 1 639 667 182 25 0 chr1 7088736 7088857 -190106575 - B1_Mur1 SINE Alu 0 149 26 1 639 307 235 176 92 chr1 7088742 7088873 -190106559 - B4 SINE B4 -72 220 79 1 639 258 248 96 64 chr1 7088773 7088898 -190106534 - MT2B LTR ERVL -336 265 137 1 639 990 99 185 0 chr1 7089451 7089469 -190105963 - B2_Mm1t SINE B2 0 193 176 1 639 243 0 0 0 chr1 7089469 7089496 -190105936 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 639 990 99 185 0 chr1 7089496 7089639 -190105793 - B2_Mm1t SINE B2 -18 175 4 1 639 237 233 17 0 chr1 7089661 7089721 -190105711 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 639 475 171 8 8 chr1 7089750 7089880 -190105552 + (TG)n Simple_repeat Simple_repeat 2 131 0 1 639 186 43 0 0 chr1 7090019 7090042 -190105390 + (TATG)n Simple_repeat Simple_repeat 4 26 0 1 639 402 260 278 0 chr1 7090051 7090220 -190105212 - ID_B1 SINE B4 -8 216 1 1 639 584 246 80 16 chr1 7090822 7091000 -190104432 + MLT1D LTR MaLR 367 648 -6 1 639 274 56 0 0 chr1 7091349 7091385 -190104047 - URR1B DNA MER1_type 0 225 190 1 639 1255 81 0 0 chr1 7091409 7091557 -190103875 - B1_Mus1 SINE Alu 0 148 1 1 639 610 190 234 0 chr1 7091572 7091730 -190103702 - URR1B DNA MER1_type -22 203 9 1 639 211 104 0 40 chr1 7091793 7091821 -190103611 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 639 5051 34 5 0 chr1 7091821 7092386 -190103046 + L1Md_F2 LINE L1 6013 6580 -2 1 639 211 104 0 40 chr1 7092386 7092407 -190103025 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 639 1069 147 172 5 chr1 7093305 7093497 -190101935 - URR1B DNA MER1_type 0 225 2 1 639 1315 124 43 0 chr1 7093817 7094003 -190101429 - B2_Mm2 SINE B2 -1 194 1 1 639 747 235 8 51 chr1 7094218 7094403 -190101029 - B3 SINE B2 -26 167 1 1 639 23 33 0 0 chr1 7094856 7094886 -190100546 + AT_rich Low_complexity Low_complexity 1 30 0 1 639 244 271 157 45 chr1 7094895 7094984 -190100448 + B3A SINE B2 94 192 -6 1 639 752 65 9 0 chr1 7095685 7095792 -190099640 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 1 639 1075 100 119 0 chr1 7095796 7095956 -190099476 - B2_Mm1t SINE B2 -13 180 2 1 639 598 164 102 66 chr1 7097329 7097466 -190097966 - B1_Mm SINE Alu -3 144 3 1 639 233 268 18 0 chr1 7097686 7097742 -190097690 + RSINE1 SINE B4 69 125 -40 1 639 267 31 0 0 chr1 7097772 7097804 -190097628 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 639 1205 75 7 0 chr1 7098084 7098231 -190097201 + B1_Mus1 SINE Alu 1 148 0 1 639 666 279 52 65 chr1 7098703 7098994 -190096438 + ORR1E LTR MaLR 1 287 -72 1 639 345 75 0 0 chr1 7099198 7099251 -190096181 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 639 538 281 8 8 chr1 7099371 7099493 -190095939 - B4A SINE B4 -169 123 2 1 639 411 229 251 29 chr1 7099563 7099770 -190095662 - L1MA7 LINE L1 -266 6025 5773 1 639 778 200 7 7 chr1 7099774 7099915 -190095517 - ID_B1 SINE B4 0 224 84 1 639 825 296 57 12 chr1 7099920 7100252 -190095180 - L1MA7 LINE L1 -511 5780 5434 1 639 226 323 0 30 chr1 7100480 7100579 -190094853 - ID_B1 SINE B4 -29 195 100 1 639 400 227 98 8 chr1 7100680 7100813 -190094619 - L1MA7 LINE L1 -888 5252 5108 1 639 533 246 23 38 chr1 7101001 7101132 -190094300 - B1F2 SINE Alu -20 129 1 1 639 537 246 21 86 chr1 7101132 7101194 -190094238 - L1MA7 LINE L1 -1092 5051 4994 1 639 658 255 29 83 chr1 7101194 7101399 -190094033 - B3A SINE B2 -3 195 2 1 639 537 246 21 86 chr1 7101399 7101523 -190093909 - L1MA7 LINE L1 -1150 4993 4877 1 639 1486 282 84 32 chr1 7102011 7102535 -190092897 - Lx5 LINE L1 -16 7034 6484 1 639 514 276 0 0 chr1 7102538 7102643 -190092789 - Lx5 LINE L1 -688 6362 6258 1 639 519 17 0 0 chr1 7102660 7102720 -190092712 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 1 639 591 15 0 0 chr1 7102720 7102788 -190092644 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 1 639 1312 106 11 27 chr1 7102788 7102973 -190092459 - B2_Mm2 SINE B2 -12 183 2 2 639 1295 218 104 43 chr1 7103381 7103726 -190091706 + ORR1D1 LTR MaLR 1 366 -8 2 639 1473 80 16 0 chr1 7104481 7104668 -190090764 - B2_Mm1t SINE B2 -3 190 1 2 639 318 266 23 161 chr1 7104689 7104819 -190090613 - PB1D7 SINE Alu -8 112 1 2 639 227 122 0 20 chr1 7104974 7105024 -190090408 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 2 639 467 144 68 233 chr1 7105024 7105108 -190090324 - B1_Mur4 SINE Alu -14 136 68 2 639 1305 47 0 0 chr1 7105108 7105256 -190090176 + B1_Mus1 SINE Alu 1 148 0 2 639 467 144 68 233 chr1 7105256 7105334 -190090098 - B1_Mur4 SINE Alu -83 67 1 2 639 227 267 48 38 chr1 7105386 7105491 -190089941 - L1MA7 LINE L1 -3256 2887 2782 1 639 252 292 10 0 chr1 7105491 7105554 -190089878 - PB1D10 SINE Alu -59 68 1 2 639 281 253 21 10 chr1 7105557 7105653 -190089779 - L1MA7 LINE L1 -3815 2325 2229 1 639 443 196 40 97 chr1 7105766 7105890 -190089542 + MT2B LTR ERVL 148 264 -337 2 639 1109 50 0 7 chr1 7105786 7105926 -190089506 + B1_Mus1 SINE Alu 10 148 0 2 639 198 0 0 0 chr1 7105959 7105981 -190089451 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 2 639 508 294 68 44 chr1 7106010 7106216 -190089216 - MER44D DNA MER2_type -488 217 7 2 639 234 0 0 0 chr1 7106489 7106515 -190088917 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 639 257 196 212 71 chr1 7107003 7107102 -190088330 + B3 SINE B2 1 113 -103 2 639 280 335 78 30 chr1 7107384 7107550 -190087882 + MamRep137 DNA TcMar? 76 249 -195 2 639 686 246 106 22 chr1 7107567 7107746 -190087686 + B3A SINE B2 3 196 -2 2 639 207 184 20 0 chr1 7107747 7107783 -190087649 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 639 1456 94 5 5 chr1 7107783 7107976 -190087456 - B2_Mm1a SINE B2 0 193 1 2 639 207 184 20 0 chr1 7107976 7107988 -190087444 + (CA)n Simple_repeat Simple_repeat 1 12 0 2 639 1874 134 100 7 chr1 7108017 7108326 -190087106 - ORR1B2 LTR MaLR -19 348 11 2 639 1095 75 11 18 chr1 7108863 7109300 -190086132 + (CA)n Simple_repeat Simple_repeat 1 434 0 2 639 416 212 0 36 chr1 7109631 7109714 -190085718 - PB1D10 SINE Alu -32 85 6 2 639 256 284 58 58 chr1 7109637 7109723 -190085709 - B4A SINE B4 -125 167 82 2 639 234 0 0 0 chr1 7109875 7109901 -190085531 + (T)n Simple_repeat Simple_repeat 1 26 0 2 639 298 323 105 0 chr1 7109956 7110089 -190085343 + MER3 DNA MER1_type 56 202 -7 2 639 429 242 256 64 chr1 7110978 7111150 -190084282 + ID_B1 SINE B4 2 206 -18 2 639 284 71 268 0 chr1 7111471 7111527 -190083905 - MERVL_2A-int LTR ERVL -19 5742 5672 2 639 1836 144 179 3 chr1 7111531 7111844 -190083588 - RLTR9A LTR ERVK 0 368 1 2 639 292 211 27 27 chr1 7111846 7111919 -190083513 - RLTR45-int LTR ERVK -3 7403 7331 2 639 389 346 45 96 chr1 7112134 7112489 -190082943 - RLTR45-int LTR ERVK -984 6422 6086 2 639 9060 147 57 63 chr1 7112486 7113732 -190081700 - RMER16-int LTR ERVK -1230 4176 2870 2 639 297 68 0 0 chr1 7113732 7113776 -190081656 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 639 9060 147 57 63 chr1 7113776 7114291 -190081141 - RMER16-int LTR ERVK -2537 2869 2407 2 639 2112 52 0 0 chr1 7114291 7114558 -190080874 - L1Md_A LINE L1 0 6582 6316 2 639 9060 147 57 63 chr1 7114558 7114684 -190080748 - RMER16-int LTR ERVK -3000 2406 2300 2 639 1745 150 94 26 chr1 7114718 7115101 -190080331 - RLTR9E LTR ERVK 0 409 1 2 639 481 56 26 66 chr1 7115103 7115179 -190080253 - ETnERV2-int LTR ERVK -3 7403 7331 2 639 1809 197 149 8 chr1 7115179 7115651 -190079781 - RLTR13D6 LTR ERVK -363 539 1 2 639 1578 135 12 4 chr1 7115667 7115913 -190079519 - ETnERV3-int LTR ERVK -32 5776 5529 2 639 390 94 0 59 chr1 7115926 7115994 -190079438 - RLTR45-int LTR ERVK -1172 6072 6009 2 639 1183 144 100 172 chr1 7116097 7116416 -190079016 - ETnERV2-int LTR ERVK -984 6422 6127 2 639 3534 178 83 53 chr1 7116385 7118076 -190077356 - ETnERV2-int LTR ERVK -3321 4085 2371 2 639 1768 172 207 21 chr1 7118092 7118564 -190076868 - ETnERV2-int LTR ERVK -4419 2987 2428 2 639 4245 183 37 104 chr1 7118563 7119815 -190075617 - MMETn-int LTR ERVK -3675 1169 2 2 639 1757 138 99 31 chr1 7119817 7120200 -190075232 - RLTR9E LTR ERVK 0 409 1 2 639 2542 52 88 8 chr1 7120200 7120551 -190074881 - MTA_Mm LTR MaLR -17 379 1 2 639 2595 217 71 89 chr1 7120577 7121689 -190073743 - ETnERV2-int LTR ERVK -2516 3292 1456 2 639 4664 157 81 48 chr1 7121832 7122926 -190072506 - ETnERV2-int LTR ERVK -5216 2190 1060 2 639 2077 129 30 19 chr1 7123316 7123680 -190071752 - RLTR9A LTR ERVK 0 368 1 2 639 3060 196 9 56 chr1 7123717 7124383 -190071049 - ORR1B1-int LTR MaLR -1326 637 3 2 639 481 147 0 0 chr1 7124388 7124463 -190070969 - ORR1B1 LTR MaLR -8 321 247 2 639 648 102 92 8 chr1 7124462 7124581 -190070851 - ORR1B1 LTR MaLR -265 129 1 2 639 914 67 253 0 chr1 7124675 7124825 -190070607 - B2_Mm2 SINE B2 -6 189 2 2 639 447 162 0 0 chr1 7125147 7125227 -190070205 + T-rich Low_complexity Low_complexity 5 84 0 2 639 2303 96 31 38 chr1 7125248 7125640 -190069792 - L1_Mus3 LINE L1 0 6638 6250 2 639 1885 77 8 0 chr1 7125640 7125886 -190069546 + L1_Mus3 LINE L1 6019 6266 -372 2 639 711 208 124 5 chr1 7127315 7127508 -190067924 - B3 SINE B2 0 216 1 2 639 24 0 0 0 chr1 7128070 7128094 -190067338 + AT_rich Low_complexity Low_complexity 1 24 0 2 639 238 303 160 24 chr1 7128693 7128818 -190066614 - MER82 DNA MER2_type -61 592 451 2 639 723 12 0 0 chr1 7128979 7129063 -190066369 + (TCTCCC)n Simple_repeat Simple_repeat 3 86 0 2 639 369 0 0 0 chr1 7129095 7129136 -190066296 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 639 365 322 84 37 chr1 7129645 7129835 -190065597 - Lx8 LINE L1 -198 7275 7077 2 639 245 250 158 0 chr1 7130843 7130919 -190064513 + PB1D10 SINE Alu 25 112 -5 2 639 326 264 21 94 chr1 7130996 7131092 -190064340 + ID_B1 SINE B4 126 214 -10 2 639 461 292 34 20 chr1 7131395 7131542 -190063890 - B1F SINE Alu 0 149 1 2 639 545 276 0 23 chr1 7131420 7131550 -190063882 - ID_B1 SINE B4 -22 202 76 2 639 21 57 0 0 chr1 7131654 7131689 -190063743 + AT_rich Low_complexity Low_complexity 1 35 0 2 639 294 343 120 0 chr1 7131878 7131986 -190063446 + B1F1 SINE Alu 3 123 -26 2 639 423 0 0 0 chr1 7131990 7132037 -190063395 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 639 1294 97 0 6 chr1 7133007 7133184 -190062248 - B2_Mm2 SINE B2 -19 176 1 2 639 218 268 18 0 chr1 7133513 7133569 -190061863 - B3 SINE B2 -158 58 2 2 639 24 32 0 0 chr1 7133581 7133612 -190061820 + AT_rich Low_complexity Low_complexity 1 31 0 2 639 349 203 13 13 chr1 7133685 7133760 -190061672 - ID_B1 SINE B4 0 224 150 2 639 260 256 35 58 chr1 7133760 7133771 -190061661 - B1F SINE Alu -1 147 64 2 639 228 292 154 64 chr1 7133787 7134054 -190061378 - B4 SINE B4 0 292 2 2 639 255 114 0 0 chr1 7134356 7134400 -190061032 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 639 493 197 122 14 chr1 7134408 7134547 -190060885 - B3A SINE B2 -43 155 2 2 639 607 242 0 0 chr1 7134940 7135060 -190060372 + B3 SINE B2 1 120 -96 2 639 1407 140 71 10 chr1 7135122 7135417 -190060015 + Lx9 LINE L1 7331 7643 -1 2 639 207 148 55 18 chr1 7136078 7136133 -190059299 + T-rich Low_complexity Low_complexity 4 60 0 2 639 1122 62 14 0 chr1 7136583 7136728 -190058704 - B1_Mus2 SINE Alu 0 147 1 2 639 361 266 97 35 chr1 7136832 7136945 -190058487 + PB1D9 SINE Alu 1 120 0 2 639 343 260 39 0 chr1 7137257 7137334 -190058098 + B1F SINE Alu 36 115 -34 2 639 681 242 7 13 chr1 7139032 7139187 -190056245 - B3 SINE B2 0 216 63 2 639 189 0 0 0 chr1 7139829 7139850 -190055582 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 639 427 259 316 58 chr1 7139884 7140109 -190055323 - B4A SINE B4 -8 284 2 2 639 968 207 49 10 chr1 7140409 7140614 -190054818 - MTD LTR MaLR -5 414 202 2 639 246 125 0 0 chr1 7140621 7140669 -190054763 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 2 639 805 244 28 49 chr1 7140669 7140699 -190054733 - MTD LTR MaLR -182 237 196 2 639 1196 109 11 0 chr1 7140699 7140873 -190054559 - B2_Mm1t SINE B2 -16 177 2 2 639 805 243 28 45 chr1 7140873 7141088 -190054344 - MTD LTR MaLR -209 210 1 2 639 414 0 0 0 chr1 7141660 7141706 -190053726 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 639 29 0 0 0 chr1 7142105 7142134 -190053298 + AT_rich Low_complexity Low_complexity 1 29 0 2 639 565 220 0 44 chr1 7142140 7142254 -190053178 - RSINE1 SINE B4 -54 111 3 2 639 288 0 0 0 chr1 7142317 7142349 -190053083 + (TTG)n Simple_repeat Simple_repeat 3 34 0 2 639 1987 196 44 78 chr1 7142369 7142895 -190052537 - RLTR18B LTR ERVK -2 510 3 2 639 832 164 189 11 chr1 7143342 7143533 -190051899 + URR1A DNA MER1_type 1 225 -1 2 639 270 300 42 14 chr1 7144117 7144188 -190051244 - ID4_ SINE ID -7 76 4 2 639 329 250 243 27 chr1 7144208 7144224 -190051208 + ID_B1 SINE B4 82 216 -8 2 639 536 211 0 0 chr1 7144224 7144319 -190051113 + PB1D7 SINE Alu 18 112 -8 2 639 288 350 41 0 chr1 7144358 7144455 -190050977 - PB1D7 SINE Alu -7 113 13 2 639 26 30 0 0 chr1 7146526 7146559 -190048873 + AT_rich Low_complexity Low_complexity 1 33 0 2 639 210 116 47 0 chr1 7146745 7146788 -190048644 + T-rich Low_complexity Low_complexity 2 46 0 2 639 444 232 39 23 chr1 7146789 7146917 -190048515 - RSINE1 SINE B4 -28 137 8 2 639 232 146 20 40 chr1 7147419 7147490 -190047942 - L1Md_T LINE L1 0 6582 6513 2 639 183 42 0 0 chr1 7147510 7147534 -190047898 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2 639 1177 68 0 0 chr1 7147536 7147683 -190047749 - B1_Mus2 SINE Alu 0 147 1 2 639 720 257 111 6 chr1 7148803 7148983 -190046449 + B3 SINE B2 1 199 -17 2 639 1176 120 6 0 chr1 7148984 7149159 -190046273 + Lx2B LINE L1 5774 5949 -1051 2 639 214 380 32 16 chr1 7149317 7149440 -190045992 - L2c LINE L2 -234 3153 3029 2 639 247 349 11 11 chr1 7150346 7150433 -190044999 + PB1D7 SINE Alu 2 88 -32 2 639 23 33 0 0 chr1 7150848 7150878 -190044554 + AT_rich Low_complexity Low_complexity 1 30 0 2 639 283 358 10 10 chr1 7151812 7151908 -190043524 - PB1D10 SINE Alu -3 114 19 2 639 604 285 32 0 chr1 7151985 7152143 -190043289 - RSINE1 SINE B4 0 165 3 2 639 230 339 42 25 chr1 7152401 7152519 -190042913 + B4A SINE B4 1 120 -172 2 639 1256 269 100 11 chr1 7152674 7153043 -190042389 - Lx8 LINE L1 -192 7281 6880 3 639 278 230 276 0 chr1 7153093 7153180 -190042252 - Lx8 LINE L1 -701 6772 6662 3 639 1457 220 128 72 chr1 7153725 7154171 -190041261 - RLTR33 LTR ERVK -33 645 175 3 639 891 0 0 0 chr1 7154317 7154416 -190041016 + (TTCTC)n Simple_repeat Simple_repeat 1 99 0 3 639 302 288 0 0 chr1 7154423 7154496 -190040936 - ID_B1 SINE B4 -39 185 113 3 639 274 200 103 72 chr1 7154496 7154513 -190040919 - PB1D7 SINE Alu -12 83 9 3 639 216 149 0 0 chr1 7155307 7155354 -190040078 + (T)n Simple_repeat Simple_repeat 1 47 0 3 639 290 45 23 0 chr1 7155712 7155756 -190039676 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3 639 573 273 12 53 chr1 7156790 7156960 -190038472 + RSINE1 SINE B4 3 165 0 3 639 186 43 0 0 chr1 7157755 7157778 -190037654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 639 529 252 23 16 chr1 7159139 7159268 -190036164 - B3 SINE B2 0 216 87 3 639 200 280 0 0 chr1 7159795 7159845 -190035587 + GA-rich Low_complexity Low_complexity 1 50 0 3 639 397 187 0 74 chr1 7161593 7161674 -190033758 - ID4_ SINE ID -7 76 2 3 639 258 247 25 0 chr1 7162173 7162254 -190033178 + A-rich Low_complexity Low_complexity 4 86 0 3 639 350 293 57 8 chr1 7162254 7162378 -190033054 + B1F SINE Alu 1 130 -19 3 639 1332 259 120 23 chr1 7163324 7163972 -190031460 - L1_Mur3 LINE L1 -1715 4165 3455 3 639 520 196 188 0 chr1 7163977 7164115 -190031317 - ORR1D1 LTR MaLR -210 164 1 3 639 863 227 260 7 chr1 7164135 7164423 -190031009 - Lx8 LINE L1 -452 7021 6661 3 639 862 251 142 5 chr1 7164438 7164835 -190030597 - L1_Rod LINE L1 -329 5518 5089 3 639 594 230 60 36 chr1 7165252 7165419 -190030013 - RMER13A LTR ERVK -383 477 307 3 639 645 319 107 16 chr1 7165904 7166268 -190029164 + L1_Mur3 LINE L1 57 453 -7275 3 639 6329 194 64 13 chr1 7166247 7167747 -190027685 + L1_Mur3 LINE L1 2141 3716 -2164 3 639 21 0 0 0 chr1 7167759 7167780 -190027652 + GC_rich Low_complexity Low_complexity 1 21 0 3 639 32 0 0 0 chr1 7169827 7169859 -190025573 + AT_rich Low_complexity Low_complexity 1 32 0 3 639 470 171 11 0 chr1 7169886 7169974 -190025458 + L1_Mur3 LINE L1 3730 3818 -2062 3 639 2691 158 24 56 chr1 7170122 7170624 -190024808 + RMER1A Other Other 535 1020 -10 3 639 12506 137 24 44 chr1 7170699 7173789 -190021643 + L1_Mus1 LINE L1 217 3156 -2727 3 639 754 88 10 0 chr1 7173787 7173889 -190021543 + L1_Mus1 LINE L1 3779 3881 -2002 3 639 10253 88 5 1 chr1 7173890 7176013 -190019419 + L1_Mus1 LINE L1 4434 6566 -1 3 639 1067 264 98 15 chr1 7176223 7176876 -190018556 - Lx7 LINE L1 -319 7377 6642 3 639 3586 162 13 6 chr1 7176878 7177510 -190017922 - RLTR26 LTR ERVK 0 642 7 3 639 259 225 35 0 chr1 7177511 7177582 -190017850 - Lx7 LINE L1 -818 6655 6572 3 639 1171 204 175 50 chr1 7177608 7177974 -190017458 + MT2A LTR ERVL 94 493 -40 3 639 600 73 0 0 chr1 7177974 7178056 -190017376 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 639 1171 199 176 51 chr1 7178056 7178096 -190017336 + MT2A LTR ERVL 494 533 0 3 639 1390 159 47 8 chr1 7178096 7178331 -190017101 + MERVL_2A-int LTR ERVL 1 244 -5517 3 639 954 223 0 5 chr1 7180124 7180309 -190015123 + MERVL_2A-int LTR ERVL 1263 1446 -4315 3 639 36293 46 0 3 chr1 7180548 7185897 -190009535 + L1Md_T LINE L1 161 5589 -297 3 639 8643 31 0 0 chr1 7185897 7186893 -190008539 + L1Md_T LINE L1 5590 6585 0 3 639 369 0 0 0 chr1 7186901 7186942 -190008490 + (A)n Simple_repeat Simple_repeat 1 41 0 3 639 791 162 42 7 chr1 7186942 7187085 -190008347 + MERVL_2A-int LTR ERVL 1431 1578 -4183 3 639 1805 129 12 59 chr1 7187094 7187416 -190008016 + ORR1A3 LTR MaLR 12 318 -8 3 639 660 144 0 0 chr1 7187417 7187521 -190007911 + ORR1A3 LTR MaLR 223 326 0 3 639 4636 199 58 14 chr1 7187532 7188489 -190006943 + MERVL_2A-int LTR ERVL 1618 2617 -3144 3 639 1079 213 0 91 chr1 7188490 7188753 -190006679 - MTC LTR MaLR 0 421 183 3 639 3506 153 31 2 chr1 7188754 7189371 -190006061 - L1_Mur2 LINE L1 -790 5087 4453 3 639 1830 204 78 46 chr1 7189379 7189933 -190005499 + RLTR26 LTR ERVK 2 642 0 3 639 822 124 0 23 chr1 7189933 7190065 -190005367 - L1_Mur2 LINE L1 -1418 4459 4331 3 639 1510 205 237 22 chr1 7190084 7190574 -190004858 + RMER19B LTR ERVK 308 902 0 3 639 8005 148 24 19 chr1 7190575 7190699 -190004733 - L1_Mur2 LINE L1 -1541 4336 4213 3 639 908 163 54 33 chr1 7190699 7190883 -190004549 - B2_Mm2 SINE B2 -7 188 1 3 639 8005 148 24 19 chr1 7190883 7191573 -190003859 - L1_Mur2 LINE L1 -1665 4212 3518 3 639 1548 165 55 113 chr1 7191573 7191990 -190003442 - RLTR9C LTR ERVK 0 393 1 3 639 8005 177 88 16 chr1 7191990 7192955 -190002477 - L1_Mur2 LINE L1 -2361 3522 2046 3 639 348 24 0 0 chr1 7192955 7192996 -190002436 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 639 6736 234 214 10 chr1 7192996 7193823 -190001609 - L1_Mur2 LINE L1 -3838 2045 1204 3 639 1024 211 19 16 chr1 7193815 7194120 -190001312 - L1_Mur2 LINE L1 -5840 1142 831 3 639 438 196 1 1 chr1 7194360 7194452 -190000980 - MTC LTR MaLR -304 92 1 3 639 2826 160 27 29 chr1 7194452 7194935 -190000497 + MERVL_2A-int LTR ERVL 2614 3095 -2666 3 639 541 216 43 8 chr1 7194914 7195031 -190000401 + MERVL_2A-int LTR ERVL 3442 3562 -1923 3 639 368 235 0 56 chr1 7195031 7195121 -190000311 - MTC LTR MaLR -141 280 196 3 639 926 257 0 22 chr1 7195130 7195357 -190000075 - Lx6 LINE L1 -16 7444 7223 3 639 1105 287 61 23 chr1 7195358 7195887 -189999545 - Lx6 LINE L1 -566 6894 6208 3 639 645 14 0 0 chr1 7197224 7197298 -189998134 + (TCC)n Simple_repeat Simple_repeat 1 74 0 3 639 991 223 4 19 chr1 7197302 7197558 -189997874 + RMER10B LTR ERVL 14 265 -133 3 639 877 192 60 40 chr1 7197533 7197734 -189997698 + RMER10B LTR ERVL 194 398 0 3 639 328 288 127 61 chr1 7197895 7198124 -189997308 + RLTR12B LTR ERVK 24 267 -261 3 639 319 291 0 23 chr1 7198133 7198221 -189997211 + GA-rich Low_complexity Low_complexity 1 86 0 3 639 351 252 76 94 chr1 7198222 7198288 -189997144 + RLTR12B LTR ERVK 239 294 -234 3 639 4246 98 7 32 chr1 7198288 7198890 -189996542 - LTRIS_Mus LTR ERV1 0 587 1 3 639 351 252 76 94 chr1 7198890 7199046 -189996386 + RLTR12B LTR ERVK 295 457 -71 3 639 619 274 57 44 chr1 7200399 7200647 -189994785 + MURVY-LTR LTR ERV1 269 519 0 3 639 355 211 71 24 chr1 7201282 7201408 -189994024 + RMER17C-int LTR ERVK 2752 2883 -355 3 639 1167 159 37 0 chr1 7201527 7201741 -189993691 + RLTR28 LTR ERVL 67 288 -236 3 639 7361 200 22 7 chr1 7201769 7203320 -189992112 - Lx5 LINE L1 -1 7049 5470 3 639 711 67 0 46 chr1 7203321 7203430 -189992002 + L1_Mur2 LINE L1 4447 4550 -1327 3 639 6281 83 82 0 chr1 7203436 7204440 -189990992 - L1_Mus3 LINE L1 -107 6531 5447 3 639 1703 85 53 0 chr1 7204449 7204695 -189990737 - L1_Mus1 LINE L1 0 6567 6309 3 639 4000 42 6 0 chr1 7204695 7205171 -189990261 + L1VL1 LINE L1 310 788 -5634 3 639 6793 120 83 144 chr1 7205163 7206030 -189989402 - L1_Mus3 LINE L1 -423 5460 4568 3 639 1000 81 0 0 chr1 7206030 7206166 -189989266 - B1_Mm SINE Alu 0 147 12 3 639 6793 120 83 144 chr1 7206166 7206693 -189988739 - L1_Mus3 LINE L1 -423 4567 4024 3 639 1834 193 25 19 chr1 7206687 7207051 -189988381 - L1VL1 LINE L1 -5864 558 193 3 639 759 194 100 0 chr1 7207055 7207225 -189988207 - L1_Mur3 LINE L1 -3853 2024 1838 3 639 2781 104 48 0 chr1 7207226 7207660 -189987772 + RLTR1C LTR ERV1 1 455 -48 3 639 261 0 0 0 chr1 7207660 7207689 -189987743 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 639 1366 197 78 10 chr1 7207689 7207723 -189987709 + RLTR1C LTR ERV1 556 603 -2 3 639 2449 209 46 50 chr1 7207725 7208737 -189986695 - L1_Mur3 LINE L1 -4039 1841 845 3 79 685 227 65 0 chr1 7208959 7209144 -189986288 - MTD LTR MaLR -209 210 14 3 640 28 48 0 0 chr1 7209338 7209380 -189986052 + AT_rich Low_complexity Low_complexity 1 42 0 3 640 3336 202 58 10 chr1 7209773 7209891 -189985541 - RMER1A Other Other -10 1020 895 3 640 267 54 0 0 chr1 7209891 7209928 -189985504 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 640 3336 202 58 10 chr1 7209928 7210503 -189984929 - RMER1A Other Other -136 894 295 3 640 1565 271 64 57 chr1 7210494 7211252 -189984180 - RMER1B Other Other -526 540 2 3 640 1132 192 4 4 chr1 7212165 7212390 -189983042 - URR1A DNA MER1_type 0 226 2 3 640 2383 113 0 0 chr1 7212835 7213161 -189982271 + ORR1A3 LTR MaLR 1 326 0 3 640 248 356 52 24 chr1 7213949 7214159 -189981273 + MIR SINE MIR 27 242 -20 3 640 420 245 185 81 chr1 7214621 7214794 -189980638 + B3A SINE B2 1 191 -7 3 640 2737 165 27 71 chr1 7215089 7215637 -189979795 + RLTR28 LTR ERVL 1 524 0 3 640 663 345 8 29 chr1 7215809 7216051 -189979381 + ORR1D2 LTR MaLR 4 240 -130 3 640 485 169 0 0 chr1 7216070 7216153 -189979279 + L1_Mur2 LINE L1 1365 1447 -4430 3 640 271 151 0 86 chr1 7216261 7216319 -189979113 + B1_Mus1 SINE Alu 8 60 -88 3 640 201 306 0 0 chr1 7216319 7216368 -189979064 + (CAGAGA)n Simple_repeat Simple_repeat 5 53 0 3 640 660 39 0 0 chr1 7216454 7216531 -189978901 - L1_Mus2 LINE L1 -325 6241 6165 3 640 2302 84 6 6 chr1 7216532 7216856 -189978576 + L1_Mus2 LINE L1 6243 6566 0 3 640 370 111 0 45 chr1 7216937 7217003 -189978429 + B1_Mus2 SINE Alu 85 147 0 3 640 484 292 35 25 chr1 7217247 7217447 -189977985 + B3 SINE B2 2 203 -13 3 640 252 0 0 0 chr1 7217450 7217478 -189977954 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 640 294 315 47 8 chr1 7218271 7218399 -189977033 + MTD LTR MaLR 1 133 -226 3 640 1066 170 60 63 chr1 7218455 7218815 -189976617 + RLTRETN_Mm LTR ERVK 1 409 0 3 640 427 257 86 0 chr1 7218931 7219036 -189976396 - PB1D9 SINE Alu -5 115 2 3 640 267 260 13 64 chr1 7219153 7219231 -189976201 - PB1D10 SINE Alu -27 90 17 3 640 231 341 12 0 chr1 7219168 7219250 -189976182 - ID_B1 SINE B4 -63 161 79 3 640 338 316 110 0 chr1 7220407 7220543 -189974889 + MTD LTR MaLR 184 334 -85 3 640 1697 131 87 0 chr1 7220570 7220868 -189974564 - IAPEY3_LTR LTR ERVK -6 326 3 3 640 22 94 0 0 chr1 7220907 7220971 -189974461 + AT_rich Low_complexity Low_complexity 1 64 0 3 640 34087 65 1 3 chr1 7221067 7227302 -189968130 - L1Md_F2 LINE L1 0 6585 268 3 640 1082 219 55 10 chr1 7227305 7227614 -189967818 - IAPEz-int LTR ERVK -30 6451 6129 3 640 16788 93 4 5 chr1 7227630 7230091 -189965341 - MMERVK10C-int LTR ERVK -320 7360 4877 3 640 1188 64 0 0 chr1 7230091 7230247 -189965185 - MMERVK10C-int LTR ERVK -2896 4685 4530 3 640 466 197 14 4 chr1 7230262 7230384 -189965048 - MMERVK10C-int LTR ERVK -2380 2464 2362 3 640 3219 134 152 2 chr1 7230389 7231000 -189964432 - ETnERV2-int LTR ERVK -3135 4271 3569 3 640 630 202 0 0 chr1 7231028 7231147 -189964285 - ETnERV2-int LTR ERVK -4653 2753 2635 3 640 273 256 0 58 chr1 7231159 7231246 -189964186 - ETnERV2-int LTR ERVK -4867 2539 2458 3 640 471 212 88 0 chr1 7231262 7231375 -189964057 - RMER16-int LTR ERVK -5077 1060 938 3 640 1550 208 119 21 chr1 7231378 7231893 -189963539 - RMER16-int LTR ERVK -5469 668 192 3 640 913 139 75 40 chr1 7231998 7232320 -189963112 - IAPEY3-int LTR ERVK -6629 952 544 3 640 884 142 30 12 chr1 7232314 7232478 -189962954 - IAPEY3-int LTR ERVK -7513 167 1 3 640 1775 130 90 0 chr1 7232481 7232781 -189962651 - IAPEY3_LTR LTR ERVK -5 327 1 3 640 629 282 14 7 chr1 7233631 7233774 -189961658 - ID_B1 SINE B4 0 224 81 3 640 24 103 0 0 chr1 7235121 7235208 -189960224 + AT_rich Low_complexity Low_complexity 1 87 0 3 640 3251 211 35 89 chr1 7235816 7236680 -189958752 + RLTR40 LTR ERVK 1 817 0 3 640 23 0 0 0 chr1 7237255 7237278 -189958154 + AT_rich Low_complexity Low_complexity 1 23 0 3 640 447 19 0 0 chr1 7237831 7237883 -189957549 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 640 2586 252 54 26 chr1 7237968 7238799 -189956633 - Lx9 LINE L1 -127 7517 6664 3 640 2176 180 24 0 chr1 7238803 7239180 -189956252 - ORR1B1 LTR MaLR -8 386 1 3 640 1229 224 189 31 chr1 7239183 7239722 -189955710 - Lx9 LINE L1 -979 6665 6042 3 640 377 262 189 31 chr1 7240740 7240968 -189954464 + Tigger7 DNA MER2_type 2228 2491 0 3 640 333 283 88 0 chr1 7241242 7241355 -189954077 - MER2B DNA MER2_type -33 303 181 3 640 243 299 25 25 chr1 7241727 7241806 -189953626 - ID2 SINE ID -2 81 3 3 640 329 276 76 61 chr1 7241809 7241940 -189953492 - B1F SINE Alu 0 149 17 4 640 329 265 77 12 chr1 7242049 7242217 -189953215 - Zaphod DNA Tip100 -665 3366 3188 4 640 2891 125 46 2 chr1 7242883 7243357 -189952075 + Lx2 LINE L1 6151 6645 -352 4 640 1281 124 28 0 chr1 7243355 7243572 -189951860 + Lx2 LINE L1 6775 6997 0 4 640 1697 193 98 10 chr1 7243588 7244079 -189951353 - L1_Mur3 LINE L1 -4105 1775 1242 4 640 1013 189 24 5 chr1 7244224 7244431 -189951001 - Lx LINE L1 -7 6647 6437 4 640 10328 171 11 43 chr1 7244432 7246047 -189949385 - L1_Mur3 LINE L1 -1200 4686 3126 4 640 336 24 0 0 chr1 7246047 7246088 -189949344 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 4 640 10328 171 11 43 chr1 7246088 7246354 -189949078 - L1_Mur3 LINE L1 -2761 3125 2877 4 640 1010 83 7 27 chr1 7246354 7246503 -189948929 - B1_Mus2 SINE Alu 0 147 2 4 640 10328 171 11 43 chr1 7246503 7246921 -189948511 - L1_Mur3 LINE L1 -3010 2876 2459 4 640 238 169 99 0 chr1 7246939 7247010 -189948422 - L1M2 LINE L1 -3321 2822 2745 4 640 324 281 0 0 chr1 7247996 7248085 -189947347 + PB1D10 SINE Alu 27 115 -2 4 640 5893 91 21 6 chr1 7248229 7249952 -189945480 - L1VL2 LINE L1 -1789 1826 75 4 640 5268 107 210 1 chr1 7249954 7250097 -189945335 - L1VL4 LINE L1 -1449 2110 1958 4 640 261 0 0 0 chr1 7250097 7250126 -189945306 + (TTA)n Simple_repeat Simple_repeat 1 29 0 4 640 5268 135 121 1 chr1 7250126 7251852 -189943580 - L1VL4 LINE L1 -1602 1957 1 4 640 2234 260 37 13 chr1 7251852 7252655 -189942777 - L1_Mur3 LINE L1 -5828 1258 495 4 640 660 287 10 0 chr1 7252767 7252962 -189942470 - Lx8 LINE L1 -1054 6419 6223 4 640 254 91 75 39 chr1 7252994 7253078 -189942354 - B2_Mm2 SINE B2 -12 183 47 4 640 1128 107 65 0 chr1 7253227 7253395 -189942037 - B2_Mm1t SINE B2 -13 180 2 4 640 21 57 0 0 chr1 7253395 7253430 -189942002 + AT_rich Low_complexity Low_complexity 1 35 0 4 640 4220 237 80 50 chr1 7253560 7254891 -189940541 - ORR1C2-int LTR MaLR 0 1370 1 4 640 912 191 146 68 chr1 7254891 7255170 -189940262 - ORR1C2 LTR MaLR 0 384 30 4 640 744 265 33 0 chr1 7255241 7255422 -189940010 - B3 SINE B2 -25 191 5 4 640 1520 277 113 26 chr1 7256213 7257049 -189938383 + RMER1B Other Other 44 874 -156 4 640 334 301 19 19 chr1 7257053 7257158 -189938274 - ID_B1 SINE B4 -46 178 74 4 640 549 298 95 6 chr1 7257169 7257609 -189937823 - L1MC LINE L1 -684 5660 5188 4 640 216 0 0 0 chr1 7257630 7257654 -189937778 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 640 507 289 0 0 chr1 7257655 7257776 -189937656 - RSINE1 SINE B4 -40 125 5 4 640 351 298 93 26 chr1 7257822 7258167 -189937265 - L1MC LINE L1 -995 5151 4784 4 640 371 289 67 0 chr1 7258347 7258527 -189936905 - L1MC LINE L1 -1743 4403 4212 4 640 286 269 38 13 chr1 7258571 7258650 -189936782 - ID4_ SINE ID 0 83 3 4 640 1600 325 95 17 chr1 7258681 7259675 -189935757 - Lx7 LINE L1 -5 7468 6398 4 640 411 257 44 9 chr1 7259684 7259798 -189935634 - PB1D7 SINE Alu -1 119 2 4 640 378 0 0 0 chr1 7260022 7260064 -189935368 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 640 312 218 408 33 chr1 7260108 7260260 -189935172 + B3 SINE B2 2 210 -6 4 640 231 275 0 90 chr1 7261519 7261619 -189933813 + MLT1A1 LTR MaLR 311 401 -7 4 640 33382 66 8 10 chr1 7261719 7266949 -189928483 + L1Md_Gf LINE L1 419 5589 -297 4 640 7886 47 11 0 chr1 7266949 7267922 -189927510 + L1Md_F3 LINE L1 5587 6570 -14 4 640 33382 46 4 2 chr1 7267922 7267954 -189927478 + L1Md_Gf LINE L1 5590 5616 -270 4 640 306 107 0 0 chr1 7269012 7269068 -189926364 + (A)n Simple_repeat Simple_repeat 1 56 0 4 640 3535 143 38 5 chr1 7269071 7269654 -189925778 + Lx2 LINE L1 6393 6994 -3 4 640 227 374 24 8 chr1 7269668 7269792 -189925640 + Tigger5 DNA MER2_type 7 132 -2274 4 640 410 307 43 87 chr1 7269894 7270101 -189925331 - B3A SINE B2 0 198 1 4 640 3340 33 2 10 chr1 7270467 7270866 -189924566 + MTA_Mm LTR MaLR 1 396 0 4 640 6874 32 4 0 chr1 7270866 7271711 -189923721 + MTA_Mm-int LTR MaLR 1 848 -250 4 640 35768 49 3 4 chr1 7271715 7278138 -189917294 - L1Md_T LINE L1 0 6585 73 4 640 2078 30 0 0 chr1 7278142 7278410 -189917022 + MTA_Mm-int LTR MaLR 831 1098 0 4 640 3578 30 2 10 chr1 7278410 7278809 -189916623 + MTA_Mm LTR MaLR 1 396 0 4 640 267 79 0 0 chr1 7279587 7279625 -189915807 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 640 688 178 35 43 chr1 7279725 7279866 -189915566 - B1_Mur3 SINE Alu -5 144 5 4 640 21 36 0 0 chr1 7279973 7280001 -189915431 + AT_rich Low_complexity Low_complexity 1 28 0 4 640 1148 89 0 0 chr1 7280759 7280905 -189914527 + B1_Mus2 SINE Alu 2 147 0 4 640 1930 149 15 52 chr1 7281451 7281855 -189913577 - RMER17C LTR ERVK 0 410 22 4 640 2481 111 78 21 chr1 7281855 7282242 -189913190 + RLTR9E LTR ERVK 1 409 0 4 640 7937 206 40 21 chr1 7282243 7283483 -189911949 + ETnERV-int LTR ERVK 2 1277 -2037 4 640 3272 22 3 8 chr1 7283483 7283842 -189911590 + IAPEY2_LTR LTR ERVK 1 357 0 4 640 7937 206 40 21 chr1 7283842 7284225 -189911207 + ETnERV-int LTR ERVK 1278 1656 -1658 4 640 4946 321 73 43 chr1 7284205 7285501 -189909931 + ETnERV2-int LTR ERVK 1506 2827 -3340 4 640 244 0 27 27 chr1 7285501 7285538 -189909894 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 640 17408 129 26 32 chr1 7285538 7288398 -189907034 + ETnERV2-int LTR ERVK 2828 6451 -955 4 640 375 141 0 49 chr1 7288467 7288548 -189906884 + RLTR45-int LTR ERVK 6009 6072 -1172 4 640 1664 129 16 4 chr1 7288548 7288797 -189906635 + ETnERV3-int LTR ERVK 5529 5780 -28 4 640 2434 169 97 4 chr1 7288806 7289299 -189906133 + RLTR13D6 LTR ERVK 1 539 -363 4 640 534 53 0 62 chr1 7289299 7289380 -189906052 + ETnERV2-int LTR ERVK 7331 7406 0 4 640 2188 129 80 8 chr1 7289380 7289756 -189905676 + RLTR9E LTR ERVK 1 403 -6 4 640 6709 127 103 78 chr1 7289795 7290123 -189905309 - RMER17C-int LTR ERVK -5 3233 2875 4 640 360 0 0 0 chr1 7290123 7290163 -189905269 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 640 6709 127 103 78 chr1 7290163 7291197 -189904235 - RMER17C-int LTR ERVK -364 2874 1837 4 640 34981 75 7 5 chr1 7291236 7297420 -189898012 - L1Md_F2 LINE L1 0 6582 387 4 640 1362 116 21 0 chr1 7297423 7297612 -189897820 - B2_Mm2 SINE B2 0 195 3 4 640 2068 175 62 5 chr1 7297612 7298015 -189897417 - RMER17C-int LTR ERVK -1395 1843 1418 4 640 2454 230 76 125 chr1 7298016 7298981 -189896451 - RMER17B LTR ERVK -32 926 10 4 640 308 36 214 0 chr1 7299000 7299056 -189896376 - RMER17C-int LTR ERVK -1895 1343 1276 4 640 442 171 0 0 chr1 7299304 7299374 -189896058 - 7SLRNA srpRNA srpRNA -106 208 139 4 640 1962 207 97 65 chr1 7299927 7300516 -189894916 - RMER17C-int LTR ERVK -2629 609 2 4 640 1917 138 98 44 chr1 7300521 7300711 -189894721 - RMER17C LTR ERVK -2 408 198 4 640 669 56 0 0 chr1 7300711 7300801 -189894631 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 640 1917 138 98 44 chr1 7300801 7300997 -189894435 - RMER17C LTR ERVK -213 197 1 4 640 1914 149 78 25 chr1 7302108 7302327 -189893105 - ORR1C2 LTR MaLR 0 384 151 4 640 1110 183 61 130 chr1 7302327 7302415 -189893017 - RLTRETN_Mm LTR ERVK 0 322 236 4 640 432 0 0 0 chr1 7302415 7302463 -189892969 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 640 1110 183 61 130 chr1 7302463 7302720 -189892712 - RLTRETN_Mm LTR ERVK -87 235 1 4 640 1914 149 78 25 chr1 7302720 7302857 -189892575 - ORR1C2 LTR MaLR -234 150 9 4 640 273 128 0 0 chr1 7303256 7303303 -189892129 + (T)n Simple_repeat Simple_repeat 1 47 0 4 640 291 28 0 0 chr1 7304491 7304527 -189890905 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 640 1211 218 138 32 chr1 7304753 7305094 -189890338 - MTE2a LTR MaLR -2 377 1 4 640 592 231 34 7 chr1 7305120 7305268 -189890164 - RMER15-int LTR ERVL -2631 2368 2217 4 640 808 243 273 27 chr1 7307645 7307729 -189887703 - ORR1D2-int LTR MaLR -668 702 618 4 640 315 0 0 0 chr1 7307729 7307764 -189887668 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 640 808 243 273 27 chr1 7307764 7308195 -189887237 - ORR1D2-int LTR MaLR -753 617 60 4 640 225 154 0 0 chr1 7308205 7308244 -189887188 + A-rich Low_complexity Low_complexity 1 39 0 4 640 243 246 0 50 chr1 7308246 7308306 -189887126 - ORR1D2-int LTR MaLR -1313 57 1 4 640 976 264 157 13 chr1 7308308 7308626 -189886806 - ORR1D2 LTR MaLR -2 368 5 4 640 376 267 184 75 chr1 7309515 7309847 -189885585 + RLTR9A LTR ERVK 1 368 0 4 640 737 252 89 99 chr1 7309847 7310129 -189885303 + ORR1D2 LTR MaLR 90 368 -2 4 640 252 149 0 21 chr1 7310151 7310199 -189885233 + ORR1D2-int LTR MaLR 1463 1509 0 4 640 1195 270 50 30 chr1 7310199 7310562 -189884870 + ORR1D2 LTR MaLR 1 370 0 4 640 235 298 50 50 chr1 7310944 7311043 -189884389 - MLT1B LTR MaLR -1 389 291 4 640 202 125 0 40 chr1 7311231 7311281 -189884151 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 640 327 85 0 0 chr1 7311294 7311341 -189884091 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 640 528 257 174 19 chr1 7311347 7311502 -189883930 - B3 SINE B2 -37 179 1 4 640 1275 89 0 0 chr1 7311594 7311773 -189883659 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 4 640 378 0 0 0 chr1 7311773 7311815 -189883617 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 4 640 758 180 36 16 chr1 7312559 7312925 -189882507 + CT-rich Low_complexity Low_complexity 1 373 0 4 640 573 15 0 0 chr1 7312925 7312991 -189882441 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 4 640 1350 20 0 0 chr1 7313174 7313320 -189882112 + B1_Mus2 SINE Alu 2 147 0 4 640 21 36 0 0 chr1 7313739 7313767 -189881665 + AT_rich Low_complexity Low_complexity 1 28 0 4 640 3728 221 41 12 chr1 7313804 7314577 -189880855 - Lx6 LINE L1 0 7460 6665 4 640 5578 151 42 13 chr1 7314577 7315592 -189879840 + MYSERV6-int LTR ERVK 239 1283 -7676 4 640 1206 121 16 0 chr1 7315592 7315774 -189879658 + L1_Mm LINE L1 3768 3952 -1931 4 640 6225 85 101 18 chr1 7315779 7316243 -189879189 - L1VL2 LINE L1 -2316 1299 825 4 640 1867 85 0 88 chr1 7316243 7316528 -189878904 - L1_Mus2 LINE L1 0 6566 6307 4 640 6225 105 56 40 chr1 7316528 7317301 -189878131 - L1VL2 LINE L1 -5511 824 30 4 640 2946 229 65 60 chr1 7317690 7318434 -189876998 - RMER1C Other Other -2 1340 594 4 640 1060 207 14 5 chr1 7318487 7318696 -189876736 - MYSERV6-int LTR ERVK -275 8684 8474 4 640 255 105 0 0 chr1 7318705 7318743 -189876689 - MYSERV6-int LTR ERVK -7109 1850 1813 4 640 38831 31 1 0 chr1 7318762 7325821 -189869611 - L1Md_T LINE L1 0 6585 1 4 640 2534 169 21 62 chr1 7325821 7326390 -189869042 - MYSERV6-int LTR ERVK -7132 1827 1282 4 640 1089 109 0 0 chr1 7326432 7326569 -189868863 - B1_Mus1 SINE Alu -11 137 1 4 640 12228 103 109 9 chr1 7326614 7328313 -189867119 - L1_Mus3 LINE L1 -52 6586 4645 4 640 4704 129 54 34 chr1 7328313 7329106 -189866326 - RMER17D2 LTR ERVK 0 809 1 4 640 12228 117 91 5 chr1 7329106 7329961 -189865471 - L1_Mus3 LINE L1 -1239 4644 3768 4 640 1530 127 59 0 chr1 7329961 7330214 -189865218 - MYSERV6-int LTR ERVK -7676 1283 1016 4 640 4150 101 9 35 chr1 7330221 7330975 -189864457 + Lx LINE L1 1542 2158 -1756 4 640 3456 48 2 0 chr1 7330975 7331375 -189864057 + L1Md_F2 LINE L1 6181 6581 -1 4 640 3963 158 1 150 chr1 7331375 7331611 -189863821 + Lx LINE L1 2155 2384 -3499 4 640 6545 141 23 16 chr1 7331612 7332847 -189862585 + Lx LINE L1 5411 6654 0 4 640 985 171 138 9 chr1 7332910 7333134 -189862298 + RMER1A Other Other 777 1029 -1 4 640 398 108 15 0 chr1 7334717 7334782 -189860650 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 640 274 258 0 0 chr1 7334785 7334851 -189860581 - B4A SINE B4 -19 273 208 4 640 278 308 0 0 chr1 7335279 7335344 -189860088 - B4A SINE B4 -214 78 14 4 640 7245 75 3 2 chr1 7335392 7336676 -189858756 + L1_Mus1 LINE L1 5282 6567 0 4 640 314 183 14 0 chr1 7336830 7336901 -189858531 + GA-rich Low_complexity Low_complexity 1 72 0 4 640 22 56 0 0 chr1 7337058 7337094 -189858338 + AT_rich Low_complexity Low_complexity 1 36 0 4 640 284 221 13 0 chr1 7337283 7337360 -189858072 - L1MEc LINE L1 -5626 774 697 5 640 21 71 0 0 chr1 7337685 7337727 -189857705 + AT_rich Low_complexity Low_complexity 1 42 0 5 640 581 147 0 9 chr1 7338341 7338409 -189857023 + polypyrimidine Low_complexity Low_complexity 45 112 0 5 640 1032 106 0 17 chr1 7338409 7338582 -189856850 + (TTTC)n Simple_repeat Simple_repeat 2 171 0 5 640 581 147 0 9 chr1 7338582 7338623 -189856809 + polypyrimidine Low_complexity Low_complexity 4 44 0 5 640 666 35 0 0 chr1 7338627 7338712 -189856720 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 640 449 298 24 101 chr1 7338718 7339017 -189856415 - MER58B DNA MER1_type -13 328 46 5 640 2748 36 3 26 chr1 7339429 7339769 -189855663 - IAPEY3_LTR LTR ERVK 0 332 1 5 9 20073 45 21 2 chr1 7339769 7342610 -189852822 - IAPEY3-int LTR ERVK 0 7680 4785 5 641 16624 104 13 2 chr1 7342607 7345077 -189850355 - IAPEY3-int LTR ERVK -5183 2497 1 5 641 2889 34 0 0 chr1 7345081 7345409 -189850023 - IAPEY3_LTR LTR ERVK -4 328 1 5 641 520 270 19 44 chr1 7345858 7346017 -189849415 + B4A SINE B4 137 291 -1 5 641 489 47 0 0 chr1 7346043 7346107 -189849325 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 641 261 146 0 0 chr1 7346349 7346397 -189849035 + (CAT)n Simple_repeat Simple_repeat 3 50 0 5 641 762 135 128 0 chr1 7346397 7346530 -189848902 - B1_Mur4 SINE Alu 0 150 1 5 641 1410 221 120 14 chr1 7347532 7347899 -189847533 + MTD LTR MaLR 12 417 -2 5 641 218 261 108 68 chr1 7348018 7348166 -189847266 - MER5B DNA MER1_type -21 157 4 5 641 198 156 0 0 chr1 7348493 7348538 -189846894 + GA-rich Low_complexity Low_complexity 2 46 0 5 641 511 292 185 0 chr1 7348809 7349052 -189846380 - B4 SINE B4 -4 288 1 5 641 601 176 122 0 chr1 7349094 7349225 -189846207 + URR1A DNA MER1_type 78 224 -2 5 641 333 169 46 0 chr1 7349225 7349277 -189846155 + URR1A DNA MER1_type 169 223 -3 5 641 256 231 46 0 chr1 7349277 7349329 -189846103 + URR1A DNA MER1_type 169 223 -3 5 641 258 246 46 0 chr1 7349329 7349381 -189846051 + URR1A DNA MER1_type 169 223 -3 5 641 319 314 66 42 chr1 7349610 7349813 -189845619 + MIRb SINE MIR 42 253 -15 5 641 389 300 9 9 chr1 7352455 7352566 -189842866 + MIR SINE MIR 34 144 -118 5 641 15437 178 33 46 chr1 7352573 7354312 -189841120 + L1Md_F2 LINE L1 218 1970 -3916 5 641 282 29 0 0 chr1 7354312 7354347 -189841085 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 641 15437 211 30 57 chr1 7354347 7356855 -189838577 + L1Md_F2 LINE L1 1971 4335 -1551 5 641 8046 47 7 0 chr1 7356855 7357846 -189837586 + L1Md_F3 LINE L1 5587 6584 0 5 641 15437 166 22 38 chr1 7357846 7359708 -189835724 + L1Md_F2 LINE L1 4336 6199 -383 5 641 316 150 128 70 chr1 7359708 7359794 -189835638 + MLT1A1 LTR MaLR 316 406 -2 5 641 296 271 19 0 chr1 7359794 7359901 -189835531 + L1MEg LINE L1 1103 1211 -4873 5 641 459 0 0 0 chr1 7359908 7359959 -189835473 + (GTTTG)n Simple_repeat Simple_repeat 3 53 0 5 641 346 355 49 36 chr1 7360073 7360298 -189835134 + L1M4 LINE L1 145 372 -6170 5 641 396 111 0 0 chr1 7360317 7360380 -189835052 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 5 641 580 217 47 0 chr1 7360537 7360666 -189834766 + B1_Mus1 SINE Alu 14 148 0 5 641 273 287 49 0 chr1 7360786 7360908 -189834524 + L1M4 LINE L1 1534 1661 -4985 5 641 255 215 15 0 chr1 7361009 7361074 -189834358 + L1_Rod LINE L1 1772 1837 -4010 5 641 319 295 70 45 chr1 7361074 7361230 -189834202 + L1M4 LINE L1 1934 2093 -4553 5 641 363 223 60 60 chr1 7361237 7361337 -189834095 + MLT1B LTR MaLR 20 119 -271 5 641 360 59 0 0 chr1 7361430 7361481 -189833951 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 641 269 213 58 107 chr1 7361487 7361608 -189833824 + L1M4 LINE L1 2707 2821 -3823 5 641 988 256 87 68 chr1 7361666 7362035 -189833397 - MTE2a LTR MaLR -3 376 1 5 641 1048 274 106 25 chr1 7362035 7362764 -189832668 + L1M4 LINE L1 2853 3640 -3004 5 641 222 211 39 0 chr1 7362780 7362832 -189832600 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 641 292 281 78 53 chr1 7363060 7363249 -189832183 + L1M4 LINE L1 3916 4112 -2532 5 641 8089 29 6 3 chr1 7363249 7364204 -189831228 - RLTR13A2 LTR ERVK 0 958 1 5 641 292 281 78 53 chr1 7364204 7364333 -189831099 + L1M4 LINE L1 4113 4242 -2402 5 641 675 284 41 5 chr1 7365462 7365657 -189829775 - MLT1B LTR MaLR -2 388 187 5 641 310 306 49 65 chr1 7365730 7365915 -189829517 - MLT1B LTR MaLR -201 189 8 5 641 871 277 57 63 chr1 7365919 7366250 -189829182 - ORR1E LTR MaLR -2 357 29 5 641 540 334 70 58 chr1 7366391 7366820 -189828612 - L2 LINE L2 -1742 1677 1244 5 641 755 248 0 7 chr1 7366945 7367091 -189828341 + RSINE1 SINE B4 21 165 0 5 641 674 332 35 4 chr1 7367144 7367371 -189828061 + B4A SINE B4 5 238 -54 5 641 468 93 0 0 chr1 7367681 7367756 -189827676 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 641 3278 288 51 16 chr1 7367857 7368745 -189826687 + Lx8 LINE L1 6327 7236 -237 5 641 230 0 33 0 chr1 7368745 7368775 -189826657 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 641 3278 288 51 16 chr1 7368775 7368994 -189826438 + Lx8 LINE L1 7237 7473 0 5 641 252 0 0 0 chr1 7369112 7369140 -189826292 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 641 572 281 109 50 chr1 7369148 7369442 -189825990 + RLTR11A2 LTR ERVK 1 298 -155 5 641 578 261 25 90 chr1 7369484 7369728 -189825704 + RLTR12B LTR ERVK 301 528 0 5 641 499 259 42 84 chr1 7369741 7369931 -189825501 - RLTR11B LTR ERVK -271 182 1 5 641 718 233 48 38 chr1 7370020 7370230 -189825202 + B3 SINE B2 3 214 -2 5 641 272 316 0 0 chr1 7371837 7371913 -189823519 + ID4_ SINE ID 6 81 -2 5 641 189 0 0 0 chr1 7372167 7372188 -189823244 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 641 238 323 154 48 chr1 7372445 7372549 -189822883 - RSINE1 SINE B4 -48 117 3 5 641 697 301 73 5 chr1 7372700 7372904 -189822528 - B4 SINE B4 -5 287 70 5 641 230 197 33 0 chr1 7372906 7372967 -189822465 - L1M3 LINE L1 -1845 4295 4233 5 641 306 132 0 0 chr1 7373003 7373056 -189822376 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 641 529 255 42 28 chr1 7373505 7373686 -189821746 - B3A SINE B2 -7 188 1 5 641 309 257 0 0 chr1 7373700 7373770 -189821662 - L1MC LINE L1 -1954 4192 4123 5 641 378 0 0 0 chr1 7374237 7374279 -189821153 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 641 286 58 67 34 chr1 7375551 7375640 -189819792 + A-rich Low_complexity Low_complexity 2 93 0 5 641 209 33 0 32 chr1 7376026 7376057 -189819375 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 641 270 0 0 0 chr1 7376228 7376258 -189819174 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 641 753 29 29 0 chr1 7376432 7376536 -189818896 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 641 26 50 0 0 chr1 7379399 7379439 -189815993 + AT_rich Low_complexity Low_complexity 1 40 0 5 641 202 119 0 63 chr1 7379629 7379692 -189815740 + A-rich Low_complexity Low_complexity 2 60 0 5 641 24 0 0 0 chr1 7379836 7379860 -189815572 + AT_rich Low_complexity Low_complexity 1 24 0 5 641 243 0 0 0 chr1 7379897 7379924 -189815508 + (A)n Simple_repeat Simple_repeat 1 27 0 5 641 282 38 38 19 chr1 7380303 7380356 -189815076 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 641 1023 69 21 0 chr1 7380415 7380559 -189814873 - B1_Mus1 SINE Alu 0 148 2 5 641 236 30 30 0 chr1 7380605 7380638 -189814794 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 641 24 0 0 0 chr1 7381481 7381505 -189813927 + AT_rich Low_complexity Low_complexity 1 24 0 5 641 221 98 0 24 chr1 7382027 7382069 -189813363 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 5 641 952 82 7 22 chr1 7382070 7382207 -189813225 - B1_Mus1 SINE Alu -6 142 8 5 641 261 0 0 0 chr1 7382258 7382287 -189813145 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 641 182 105 26 0 chr1 7382293 7382331 -189813101 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 641 288 0 0 0 chr1 7382443 7382475 -189812957 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 641 206 32 32 0 chr1 7383375 7383406 -189812026 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 641 204 67 0 0 chr1 7383470 7383500 -189811932 + (A)n Simple_repeat Simple_repeat 1 30 0 5 641 207 0 0 0 chr1 7383862 7383885 -189811547 + (T)n Simple_repeat Simple_repeat 1 23 0 5 641 1002 59 0 22 chr1 7383885 7384024 -189811408 - B1_Mus1 SINE Alu 0 148 13 5 641 366 80 0 0 chr1 7384120 7384170 -189811262 + (A)n Simple_repeat Simple_repeat 1 50 0 5 641 741 211 7 0 chr1 7384552 7384992 -189810440 + (TA)n Simple_repeat Simple_repeat 1 443 0 5 641 287 276 40 29 chr1 7384994 7385169 -189810263 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 5 641 25 0 0 0 chr1 7385169 7385194 -189810238 + AT_rich Low_complexity Low_complexity 1 25 0 5 641 324 216 22 19 chr1 7385198 7385521 -189809911 + (TA)n Simple_repeat Simple_repeat 1 324 0 5 641 203 187 37 0 chr1 7385980 7386087 -189809345 + (TTATA)n Simple_repeat Simple_repeat 5 115 0 5 641 21 36 0 0 chr1 7386176 7386204 -189809228 + AT_rich Low_complexity Low_complexity 1 28 0 5 641 36 70 0 0 chr1 7386249 7386320 -189809112 + AT_rich Low_complexity Low_complexity 1 71 0 5 641 3100 34 5 0 chr1 7386447 7386827 -189808605 - MTA_Mm LTR MaLR -14 382 1 5 641 931 42 211 6 chr1 7386827 7386993 -189808439 - MTA_Mm-int LTR MaLR 0 1098 899 5 641 437 78 112 38 chr1 7386991 7387071 -189808361 + B1_Mus2 SINE Alu 62 147 0 5 641 254 50 25 0 chr1 7387201 7387241 -189808191 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 5 641 1038 99 0 0 chr1 7387248 7387389 -189808043 + B1_Mus1 SINE Alu 1 141 -7 5 641 372 22 0 0 chr1 7387437 7387482 -189807950 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 641 267 79 0 0 chr1 7387592 7387630 -189807802 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 641 22 56 0 0 chr1 7387642 7387678 -189807754 + AT_rich Low_complexity Low_complexity 1 36 0 5 641 198 143 0 0 chr1 7388509 7388544 -189806888 + (CCCG)n Simple_repeat Simple_repeat 3 37 0 5 641 309 220 47 78 chr1 7388695 7388823 -189806609 - ID_B1 SINE B4 -17 207 84 5 641 582 81 9 57 chr1 7388719 7388824 -189806608 - B1_Mus1 SINE Alu -47 101 2 5 641 21 0 0 0 chr1 7388902 7388923 -189806509 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 198 0 0 0 chr1 7388949 7388971 -189806461 + (A)n Simple_repeat Simple_repeat 1 22 0 5 641 21 36 0 0 chr1 7389088 7389116 -189806316 + AT_rich Low_complexity Low_complexity 1 28 0 5 641 363 299 47 0 chr1 7389555 7389662 -189805770 + MER44D DNA MER2_type 2 113 -592 5 641 360 200 48 0 chr1 7389655 7389760 -189805672 + MER44D DNA MER2_type 514 623 -82 5 641 279 54 0 0 chr1 7390075 7390112 -189805320 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5 641 538 303 16 22 chr1 7390132 7390314 -189805118 - B3A SINE B2 -15 183 3 6 641 399 21 0 0 chr1 7390327 7390375 -189805057 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 641 243 0 0 0 chr1 7391075 7391102 -189804330 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 641 922 269 10 0 chr1 7391141 7391338 -189804094 - B4A SINE B4 -77 215 17 6 641 317 24 24 0 chr1 7391340 7391382 -189804050 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 641 431 285 38 94 chr1 7391394 7391553 -189803879 - B3A SINE B2 -42 156 7 6 641 1104 273 26 4 chr1 7392218 7392490 -189802942 + B4A SINE B4 9 286 -6 6 641 225 261 15 0 chr1 7393271 7393336 -189802096 + L1MC LINE L1 4707 4772 -1374 6 641 504 243 70 89 chr1 7393426 7393584 -189801848 + RSINE1 SINE B4 11 165 0 6 641 189 0 0 0 chr1 7393589 7393610 -189801822 + (CCA)n Simple_repeat Simple_repeat 1 21 0 6 641 223 329 78 56 chr1 7393610 7393625 -189801807 + B3A SINE B2 178 192 -6 6 641 441 303 13 26 chr1 7393993 7394149 -189801283 - Lx8 LINE L1 -263 7210 7057 6 641 1574 272 74 6 chr1 7394147 7394646 -189800786 - Lx8 LINE L1 -633 6840 6308 6 641 227 241 114 11 chr1 7394647 7394735 -189800697 - MER53 DNA hAT -29 164 68 6 641 474 18 0 0 chr1 7396149 7396204 -189799228 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 641 439 250 83 8 chr1 7396382 7396515 -189798917 - B1F SINE Alu -2 147 5 6 641 414 319 28 21 chr1 7396390 7396531 -189798901 - ID_B1 SINE B4 -13 211 70 6 641 289 331 63 24 chr1 7396778 7396905 -189798527 + MIRc SINE MIR 2 133 -135 6 641 571 261 7 7 chr1 7397288 7397427 -189798005 + B1_Mur2 SINE Alu 1 139 -10 6 641 204 175 0 24 chr1 7397428 7397469 -189797963 + (TAA)n Simple_repeat Simple_repeat 1 40 0 6 641 213 238 15 31 chr1 7397566 7397631 -189797801 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 641 444 105 316 0 chr1 7398075 7398170 -189797262 - URR1B DNA MER1_type 0 225 101 6 641 358 238 54 87 chr1 7398709 7398801 -189796631 - PB1D9 SINE Alu -27 122 34 6 641 1091 85 0 0 chr1 7398805 7398946 -189796486 + B1_Mm SINE Alu 1 141 -6 6 641 262 61 20 20 chr1 7398947 7398997 -189796435 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 6 641 510 31 0 0 chr1 7399084 7399148 -189796284 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 641 288 289 62 0 chr1 7399219 7399316 -189796116 + L1M1 LINE L1 5710 5812 -488 6 641 396 0 0 0 chr1 7399318 7399362 -189796070 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 641 1346 232 34 28 chr1 7399841 7400341 -189795091 + Lx7 LINE L1 5515 6053 -1591 6 641 933 75 22 28 chr1 7401033 7401212 -189794220 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 641 188 185 19 0 chr1 7401221 7401275 -189794157 + GA-rich Low_complexity Low_complexity 3 57 0 6 641 259 183 0 24 chr1 7402851 7402935 -189792497 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 641 180 135 0 0 chr1 7403062 7403099 -189792333 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 641 351 316 11 11 chr1 7403122 7403301 -189792131 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 641 185 250 58 0 chr1 7403593 7403645 -189791787 + L2a LINE L2 3330 3384 -42 6 641 25 51 0 0 chr1 7403987 7404026 -189791406 + AT_rich Low_complexity Low_complexity 1 39 0 6 641 211 330 30 76 chr1 7404267 7404296 -189791136 - B4 SINE B4 -82 210 86 6 641 264 274 245 0 chr1 7404296 7404398 -189791034 - B1_Mur1 SINE Alu -22 127 1 6 641 489 17 0 0 chr1 7404626 7404684 -189790748 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 641 528 248 121 24 chr1 7404694 7404818 -189790614 - RSINE1 SINE B4 -17 148 13 6 641 319 309 30 0 chr1 7405033 7405129 -189790303 + PB1D10 SINE Alu 5 112 -15 6 641 258 292 0 119 chr1 7405131 7405232 -189790200 + B4A SINE B4 8 96 -196 6 641 333 47 0 0 chr1 7405232 7405275 -189790157 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 641 325 321 113 15 chr1 7405328 7405461 -189789971 + B4A SINE B4 100 245 -47 6 641 1146 48 0 0 chr1 7405487 7405632 -189789800 + (TCTCCC)n Simple_repeat Simple_repeat 3 147 0 6 641 921 87 8 0 chr1 7405638 7405764 -189789668 - B1_Mus1 SINE Alu 0 148 22 6 641 1424 239 172 18 chr1 7406653 7407148 -189788284 - Lx8 LINE L1 -142 7331 6761 6 641 269 79 0 0 chr1 7407299 7407337 -189788095 - tRNA-Gly-GGA tRNA tRNA -37 38 1 6 641 313 285 125 70 chr1 7407352 7407552 -189787880 + B4 SINE B4 48 258 -34 6 641 1054 309 55 3 chr1 7409543 7409851 -189785581 + ORR1E LTR MaLR 4 327 -32 6 641 5053 178 71 56 chr1 7410533 7411795 -189783637 - RLTR21 LTR ERVK -264 1308 116 6 641 387 0 0 0 chr1 7411953 7411996 -189783436 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 641 537 310 60 23 chr1 7412001 7412219 -189783213 - MLT2D LTR ERVL -60 354 129 6 641 812 170 40 7 chr1 7412204 7412352 -189783080 + ORR1B1 LTR MaLR 242 394 0 6 641 1623 221 71 35 chr1 7412406 7412775 -189782657 - MTC LTR MaLR 0 421 39 6 641 2311 246 115 115 chr1 7412775 7413375 -189782057 - MTC-int LTR MaLR -2 1096 484 6 641 1521 238 119 42 chr1 7413375 7414016 -189781416 + RMER6C LTR ERVK 1 690 0 6 641 2311 246 115 115 chr1 7414016 7414494 -189780938 - MTC-int LTR MaLR -615 483 19 6 641 837 189 82 6 chr1 7414507 7414677 -189780755 + MTC LTR MaLR 234 416 -5 6 641 505 247 126 14 chr1 7414681 7414902 -189780530 - Lx7 LINE L1 -1802 5842 5593 6 641 1562 230 105 28 chr1 7414944 7415358 -189780074 + RLTR20A1 LTR ERVK 5 457 -94 6 641 414 0 0 0 chr1 7415358 7415404 -189780028 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 641 1562 230 105 28 chr1 7415404 7415486 -189779946 + RLTR20A1 LTR ERVK 458 538 -13 6 641 236 296 0 0 chr1 7416092 7416177 -189779255 - L1M5 LINE L1 -669 5571 5487 6 641 447 19 0 0 chr1 7416807 7416859 -189778573 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 641 26 50 0 0 chr1 7417144 7417184 -189778248 + AT_rich Low_complexity Low_complexity 1 40 0 6 641 704 279 53 14 chr1 7417494 7417701 -189777731 - B3A SINE B2 0 216 2 6 641 1104 263 89 33 chr1 7418185 7418613 -189776819 + Lx8 LINE L1 6650 7101 -372 6 641 524 246 164 66 chr1 7418652 7418896 -189776536 + Lx8 LINE L1 7172 7439 -34 6 641 995 220 34 6 chr1 7419047 7419270 -189776162 + RMER13B LTR ERVK 1 222 -686 6 641 1846 142 3 11 chr1 7419270 7419554 -189775878 + RMER13B LTR ERVK 181 462 -446 6 641 1193 280 49 7 chr1 7419546 7419834 -189775598 + RMER13B LTR ERVK 606 905 -3 6 641 195 129 0 0 chr1 7421647 7421678 -189773754 + (A)n Simple_repeat Simple_repeat 1 31 0 6 641 28982 92 7 20 chr1 7423482 7428748 -189766684 + L1Md_F2 LINE L1 397 5585 -298 6 641 6772 102 12 4 chr1 7428749 7429725 -189765707 + L1Md_F2 LINE L1 5587 6570 -12 6 641 487 310 6 6 chr1 7430289 7430464 -189764968 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 6 641 544 265 151 59 chr1 7430605 7430942 -189764490 + RLTR9A LTR ERVK 1 368 0 6 641 231 169 0 63 chr1 7431074 7431137 -189764295 + A-rich Low_complexity Low_complexity 1 59 0 6 641 219 170 0 0 chr1 7431262 7431309 -189764123 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 641 4439 179 30 27 chr1 7431529 7433279 -189762153 + L1_Mur3 LINE L1 540 2293 -3587 6 641 1113 189 42 5 chr1 7433285 7433550 -189761882 + L1_Mur3 LINE L1 5501 5779 -98 6 641 1107 249 42 57 chr1 7433580 7433985 -189761447 + RLTR18-int LTR ERVK 3171 3569 -1792 6 641 193 75 50 0 chr1 7434163 7434203 -189761229 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 641 2183 78 6 32 chr1 7434234 7434550 -189760882 + L1_Mus1 LINE L1 6260 6567 0 6 641 24 32 0 0 chr1 7435286 7435317 -189760115 + AT_rich Low_complexity Low_complexity 1 31 0 6 641 313 208 102 19 chr1 7435776 7435884 -189759548 + RLTR18B LTR ERVK 186 302 -210 6 641 700 217 56 64 chr1 7435884 7436135 -189759297 + RLTR18-int LTR ERVK 4180 4428 -933 6 641 1193 206 24 24 chr1 7436125 7436414 -189759018 + RLTR18-int LTR ERVK 5055 5343 -18 6 641 329 335 75 51 chr1 7436436 7436650 -189758782 + RLTR18 LTR ERVK 96 314 -302 6 641 867 326 22 19 chr1 7436691 7437010 -189758422 + RLTR18B LTR ERVK 186 505 -7 6 641 3701 240 39 10 chr1 7437018 7437412 -189758020 + Lx6 LINE L1 6347 6742 -718 6 641 243 0 0 0 chr1 7437412 7437439 -189757993 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 641 3701 240 39 11 chr1 7437439 7437972 -189757460 + Lx6 LINE L1 6743 7556 -140 6 641 980 130 109 27 chr1 7438796 7439017 -189756415 - RMER17C LTR ERVK -1 409 171 6 641 713 316 85 115 chr1 7439036 7439636 -189755796 + RLTR18 LTR ERVK 31 612 -4 6 641 207 0 0 0 chr1 7439659 7439682 -189755750 + (TCTCTG)n Simple_repeat Simple_repeat 6 28 0 6 641 359 301 96 5 chr1 7439682 7439879 -189755553 - MLT1D LTR MaLR -263 242 28 6 641 180 306 153 0 chr1 7440279 7440364 -189755068 - MIR SINE MIR -69 193 96 6 641 537 16 0 0 chr1 7440792 7440854 -189754578 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 641 528 267 13 27 chr1 7440956 7441106 -189754326 - B1_Mur2 SINE Alu -1 148 1 6 641 193 391 111 6 chr1 7441146 7441326 -189754106 + L2 LINE L2 2424 2622 -797 6 641 27 29 0 0 chr1 7441326 7441360 -189754072 + AT_rich Low_complexity Low_complexity 1 34 0 6 641 384 228 69 50 chr1 7441548 7441824 -189753608 - Lx7 LINE L1 -1801 5895 5637 6 641 855 286 39 58 chr1 7441835 7442272 -189753160 + RLTR12B LTR ERVK 5 420 -148 6 641 326 299 106 17 chr1 7442423 7442716 -189752716 - Lx7 LINE L1 -686 5605 5287 6 641 3348 38 2 0 chr1 7442756 7443151 -189752281 + MTA_Mm LTR MaLR 1 396 0 6 641 9178 37 0 1 chr1 7443151 7444250 -189751182 + MTA_Mm-int LTR MaLR 1 1098 0 6 641 3428 28 2 0 chr1 7444250 7444645 -189750787 + MTA_Mm LTR MaLR 1 396 0 6 641 268 318 58 23 chr1 7444662 7444836 -189750596 - L1_Rod LINE L1 -669 5178 4999 6 641 315 185 0 0 chr1 7444847 7444901 -189750531 + ORR1D1 LTR MaLR 1 54 -320 6 641 2917 121 75 15 chr1 7445085 7445563 -189749869 + LTRIS4 LTR ERV1 1 507 0 6 641 1525 261 30 6 chr1 7445580 7445915 -189749517 - ORR1D2 LTR MaLR -19 351 9 6 641 1723 191 92 0 chr1 7445958 7446304 -189749128 + ORR1C1 LTR MaLR 1 378 0 6 641 10574 172 27 16 chr1 7446677 7449712 -189745720 - Lx3C LINE L1 -2 6974 3891 6 641 5252 179 68 8 chr1 7449708 7451123 -189744309 - Lx3C LINE L1 -3483 2403 897 6 641 234 0 0 0 chr1 7451288 7451314 -189744118 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 641 2888 299 73 12 chr1 7451314 7452229 -189743203 - Lx8 LINE L1 -183 7290 6320 6 641 456 304 52 11 chr1 7452365 7452634 -189742798 + L1_Mur3 LINE L1 2120 2399 -3481 6 641 350 273 26 13 chr1 7452635 7452713 -189742719 + PB1D9 SINE Alu 4 82 -38 7 641 1145 332 21 25 chr1 7452784 7453575 -189741857 + L1M2 LINE L1 2456 3243 -2900 7 641 345 259 6 90 chr1 7453580 7453758 -189741674 + L1_Mur3 LINE L1 3992 4154 -1726 6 641 860 266 104 25 chr1 7453760 7454204 -189741228 + L1M2 LINE L1 4438 4916 -1227 7 641 1265 241 44 73 chr1 7454233 7454618 -189740814 + ORR1D1 LTR MaLR 1 374 0 7 641 238 364 26 60 chr1 7454786 7454903 -189740529 - PB1D7 SINE Alu -7 113 1 7 641 961 259 123 68 chr1 7455254 7455693 -189739739 - RLTR20B3 LTR ERVK -94 483 21 7 641 1149 82 0 0 chr1 7456129 7456276 -189739156 - B1_Mus1 SINE Alu 0 148 2 7 641 22 56 0 0 chr1 7456964 7457000 -189738432 + AT_rich Low_complexity Low_complexity 1 36 0 7 641 755 57 9 0 chr1 7458118 7458223 -189737209 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 7 641 1122 51 0 0 chr1 7458224 7458361 -189737071 - B1_Mus1 SINE Alu -10 138 2 7 641 23 33 0 0 chr1 7458443 7458473 -189736959 + AT_rich Low_complexity Low_complexity 1 30 0 7 641 301 88 14 56 chr1 7458875 7458947 -189736485 + A-rich Low_complexity Low_complexity 2 70 0 7 641 459 0 0 0 chr1 7459406 7459457 -189735975 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 641 360 0 0 0 chr1 7459457 7459496 -189735936 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 641 1736 175 185 6 chr1 7460325 7460682 -189734750 + MTC LTR MaLR 1 421 0 7 641 5632 109 22 5 chr1 7460975 7462584 -189732848 + L1VL2 LINE L1 188 1826 -1789 7 641 2771 92 56 0 chr1 7462716 7463109 -189732323 - BGLII LTR ERVK -3 418 4 7 641 365 281 0 0 chr1 7463259 7463348 -189732084 - PB1D10 SINE Alu -2 115 27 7 641 24 91 0 0 chr1 7464169 7464235 -189731197 + AT_rich Low_complexity Low_complexity 1 66 0 7 641 1184 63 0 6 chr1 7464426 7464585 -189730847 + L1Md_F3 LINE L1 6414 6571 -13 7 641 399 345 90 50 chr1 7464689 7464967 -189730465 - MLT1E3 LTR MaLR -160 464 176 7 641 243 42 83 0 chr1 7465148 7465196 -189730236 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 7 641 1105 62 0 46 chr1 7465196 7465349 -189730083 - B1_Mm SINE Alu 0 147 2 7 641 22 35 0 0 chr1 7465843 7465872 -189729560 + AT_rich Low_complexity Low_complexity 1 29 0 7 641 368 309 119 18 chr1 7466448 7466616 -189728816 - Lx8 LINE L1 -115 7358 7174 7 641 324 94 0 0 chr1 7466617 7466670 -189728762 + (T)n Simple_repeat Simple_repeat 1 53 0 7 641 2817 6 3 0 chr1 7466670 7466991 -189728441 + RLTRETN_Mm LTR ERVK 1 322 0 7 80 41469 25 1 6 chr1 7466991 7471857 -189723575 + MMETn-int LTR ERVK 1 4844 0 7 642 2817 6 3 0 chr1 7471857 7472178 -189723254 + RLTRETN_Mm LTR ERVK 1 322 0 7 642 207 133 0 0 chr1 7472178 7472223 -189723209 + (T)n Simple_repeat Simple_repeat 1 45 0 7 642 39611 26 4 6 chr1 7472239 7478694 -189716738 - L1Md_A LINE L1 -2 6580 140 7 642 392 238 355 22 chr1 7478683 7478866 -189716566 - Lx8 LINE L1 -292 7181 6938 7 642 1147 323 87 48 chr1 7478864 7479668 -189715764 + Lx7 LINE L1 6606 7467 -6 7 642 424 266 112 0 chr1 7479737 7479880 -189715552 - Lx8 LINE L1 -853 6620 6462 7 642 1387 231 34 86 chr1 7481700 7482144 -189713288 - MTC LTR MaLR 0 421 1 7 642 714 43 0 0 chr1 7482278 7482372 -189713060 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 642 247 257 43 0 chr1 7482388 7482458 -189712974 - MER34A1 LTR ERV1 -497 90 18 7 642 612 324 152 27 chr1 7482592 7482915 -189712517 + MTE2b LTR MaLR 3 366 -13 7 642 345 289 51 10 chr1 7482915 7483013 -189712419 + MTE2b-int LTR MaLR 1 102 -1478 7 642 642 299 103 30 chr1 7483029 7483523 -189711909 - L1M2 LINE L1 -853 5290 4761 7 642 534 249 86 148 chr1 7483651 7483929 -189711503 + MTEb LTR MaLR 96 356 -23 7 642 258 311 0 13 chr1 7484205 7484280 -189711152 + MLT1E LTR MaLR 194 267 -413 7 642 417 347 33 8 chr1 7484568 7484748 -189710684 + MLT1E LTR MaLR 436 649 -4 7 642 22 56 0 0 chr1 7484917 7484953 -189710479 + AT_rich Low_complexity Low_complexity 1 36 0 7 642 621 271 31 10 chr1 7484966 7485160 -189710272 + B3A SINE B2 1 198 0 7 642 648 77 0 0 chr1 7485426 7485517 -189709915 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 642 209 83 0 27 chr1 7485836 7485873 -189709559 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 7 642 487 215 25 8 chr1 7487302 7487424 -189708008 + RMER1C Other Other 1218 1341 -1 7 642 3017 61 53 10 chr1 7487674 7488091 -189707341 + LTRIS2 LTR ERV1 5 439 -125 7 642 3922 59 60 8 chr1 7488362 7488894 -189706538 - LTRIS2 LTR ERV1 0 564 5 7 642 2042 133 21 88 chr1 7489225 7489646 -189705786 + RLTR9C LTR ERVK 1 393 0 7 642 198 0 0 0 chr1 7489850 7489872 -189705560 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 7 642 294 307 83 16 chr1 7489961 7490203 -189705229 + MER33 DNA MER1_type 32 289 -35 7 642 237 108 0 0 chr1 7490237 7490274 -189705158 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 642 508 195 85 155 chr1 7490490 7490690 -189704742 - URR1B DNA MER1_type 0 225 40 7 642 3073 49 201 2 chr1 7490693 7491120 -189704312 - RLTR1B LTR ERV1 0 512 1 7 642 357 277 199 116 chr1 7491296 7491598 -189703834 + MER47A DNA MER2_type 40 366 0 7 642 427 217 31 33 chr1 7491879 7492373 -189703059 + (CATA)n Simple_repeat Simple_repeat 1 493 0 7 642 1389 107 27 4 chr1 7493381 7493606 -189701826 - RMER16-int LTR ERVK -856 4550 4321 7 642 2208 107 47 3 chr1 7493590 7493908 -189701524 - RMER16-int LTR ERVK -4974 432 101 7 642 5293 102 45 90 chr1 7493912 7495080 -189700352 + L1VL2 LINE L1 94 1198 -2417 7 642 3299 102 6 0 chr1 7495077 7495579 -189699853 + L1VL2 LINE L1 2484 2988 -627 7 642 627 275 19 74 chr1 7495704 7495975 -189699457 - MYSERV16_I-int LTR ERVK -1126 1200 945 7 642 2315 282 47 37 chr1 7496021 7496960 -189698472 - MYSERV-int LTR ERVK -1790 4760 3813 7 642 35 24 0 0 chr1 7497556 7497598 -189697834 + AT_rich Low_complexity Low_complexity 1 42 0 7 642 13058 116 22 14 chr1 7497785 7498912 -189696520 - L1_Mm LINE L1 -310 5573 4437 7 642 1120 43 0 21 chr1 7498912 7499056 -189696376 - B1_Mm SINE Alu -6 141 1 7 642 13058 116 22 14 chr1 7499056 7500000 -189695432 - L1_Mm LINE L1 -1447 4436 3486 7 642 5912 121 15 9 chr1 7500000 7500960 -189694472 - L1_Mm LINE L1 -2397 3486 2522 1 642 657 294 38 35 chr1 7500951 7501431 -189694001 - L1M2c LINE L1 -4251 2271 1723 2 642 683 103 0 0 chr1 7501854 7501951 -189693481 + B1_Mus1 SINE Alu 1 97 -51 3 642 4248 121 5 3 chr1 7501994 7502624 -189692808 + Lx LINE L1 6024 6654 0 4 642 223 235 19 38 chr1 7502664 7502717 -189692715 + ID4_ SINE ID 27 78 -5 5 642 21 71 0 0 chr1 7503918 7503960 -189691472 + AT_rich Low_complexity Low_complexity 1 42 0 6 642 1368 62 0 0 chr1 7504679 7504889 -189690543 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 7 642 1121 286 84 9 chr1 7506173 7506508 -189688924 - ORR1D2 LTR MaLR -10 360 1 8 642 799 303 61 4 chr1 7506555 7506784 -189688648 - Lx9 LINE L1 -802 6842 6601 9 642 1457 286 30 20 chr1 7507707 7508146 -189687286 - Lx6 LINE L1 -4 7456 7014 1 642 396 0 0 0 chr1 7508518 7508562 -189686870 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 642 758 249 19 51 chr1 7508603 7508719 -189686713 - RMER13B LTR ERVK -57 851 739 1 642 1746 127 125 37 chr1 7508719 7509095 -189686337 - RLTR9E LTR ERVK 0 409 1 1 642 758 249 19 51 chr1 7509095 7509194 -189686238 - RMER13B LTR ERVK -170 738 643 1 642 370 183 14 0 chr1 7509172 7509243 -189686189 - RMER13B LTR ERVK -836 72 1 1 642 324 331 107 7 chr1 7509246 7509395 -189686037 - RSINE1 SINE B4 -1 164 1 1 642 671 353 68 39 chr1 7509758 7510094 -189685338 - MLT1A LTR MaLR 0 374 29 1 642 640 318 85 52 chr1 7510451 7510853 -189684579 - Lx8 LINE L1 -9 7464 7050 1 642 341 308 75 0 chr1 7511472 7511592 -189683840 - Lx8 LINE L1 -472 7001 6873 1 642 1874 288 99 63 chr1 7511786 7512225 -189683207 - L1_Mur3 LINE L1 -556 5324 4833 1 642 3228 51 0 15 chr1 7512225 7512627 -189682805 + MTA_Mm LTR MaLR 1 396 0 1 642 1874 288 99 63 chr1 7512627 7512648 -189682784 - L1_Mur3 LINE L1 -1048 4832 4816 1 642 492 18 0 0 chr1 7512648 7512705 -189682727 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 642 1874 288 99 63 chr1 7512705 7513324 -189682108 - L1_Mur3 LINE L1 -1065 4815 4206 1 642 3158 81 5 50 chr1 7513962 7514423 -189681009 + L1Md_F2 LINE L1 6136 6582 0 2 642 198 0 0 0 chr1 7514718 7514740 -189680692 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 642 327 203 0 13 chr1 7514907 7514982 -189680450 - Lx4B LINE L1 -3 7055 6982 2 642 3919 186 72 29 chr1 7514983 7515801 -189679631 + Lx4B LINE L1 6100 6952 -106 2 642 261 232 0 0 chr1 7516813 7516869 -189678563 - MLT1-int LTR MaLR -1315 56 1 2 642 441 59 59 0 chr1 7517178 7517246 -189678186 - L1_Mus1 LINE L1 -2 6565 6494 2 642 25 90 0 0 chr1 7517475 7517542 -189677890 + AT_rich Low_complexity Low_complexity 1 67 0 2 642 635 301 65 45 chr1 7517902 7518149 -189677283 - RMER15 LTR ERVL -53 522 271 2 642 285 135 0 0 chr1 7518178 7518230 -189677202 + (CTATA)n Simple_repeat Simple_repeat 2 53 0 2 642 400 333 25 12 chr1 7518231 7518392 -189677040 + MLT1E2 LTR MaLR 53 215 -412 2 642 288 369 67 31 chr1 7518476 7518700 -189676732 + MLT1E1A LTR MaLR 430 661 -19 2 642 1676 208 10 75 chr1 7518710 7519094 -189676338 - ORR1C1 LTR MaLR -19 359 1 3 642 1421 198 3 27 chr1 7519139 7519435 -189675997 + ORR1D-int LTR MaLR 292 580 -790 3 642 894 233 42 9 chr1 7519489 7519701 -189675731 + Lx6 LINE L1 7237 7455 -5 3 642 1040 262 31 14 chr1 7519710 7519996 -189675436 + ORR1D-int LTR MaLR 640 930 -440 3 642 3439 45 9 0 chr1 7520064 7520488 -189674944 + L1Md_F2 LINE L1 6141 6568 -14 3 642 902 269 20 0 chr1 7520930 7521131 -189674301 + ORR1D-int LTR MaLR 956 1160 -210 3 642 331 182 0 0 chr1 7521343 7521398 -189674034 - Lx9 LINE L1 -776 6868 6814 3 642 1453 121 0 13 chr1 7521400 7521626 -189673806 - Lx2 LINE L1 0 6997 6775 3 642 5176 138 30 1 chr1 7521626 7522460 -189672972 - Lx2 LINE L1 -354 6643 5786 3 642 4752 66 23 71 chr1 7522486 7523130 -189672302 - L1VL4 LINE L1 -1953 1606 1001 3 642 1057 88 0 13 chr1 7523130 7523279 -189672153 - B1_Mm SINE Alu 0 147 1 3 642 4997 107 34 15 chr1 7523279 7524056 -189671376 - L1VL4 LINE L1 -2559 1000 197 3 642 836 231 24 42 chr1 7524062 7524181 -189671251 - Lx9 LINE L1 -829 6815 6698 3 642 1669 234 26 12 chr1 7524181 7524596 -189670836 - MTC LTR MaLR 0 421 1 3 642 836 231 24 42 chr1 7524596 7524688 -189670744 - Lx9 LINE L1 -947 6697 6608 3 642 754 139 207 44 chr1 7524696 7524868 -189670564 + ORR1D-int LTR MaLR 1135 1329 -41 3 642 660 13 0 0 chr1 7524868 7524945 -189670487 + (TTA)n Simple_repeat Simple_repeat 2 78 0 3 642 754 139 207 44 chr1 7524945 7524975 -189670457 + ORR1D-int LTR MaLR 1330 1370 0 3 642 753 325 70 50 chr1 7525174 7525858 -189669574 + L1ME1 LINE L1 5475 6172 -7 4 642 423 0 0 0 chr1 7526254 7526301 -189669131 + (T)n Simple_repeat Simple_repeat 1 47 0 4 642 422 60 105 23 chr1 7526419 7526505 -189668927 + L1Md_F2 LINE L1 6489 6581 -1 4 642 203 184 0 0 chr1 7526519 7526557 -189668875 + T-rich Low_complexity Low_complexity 1 38 0 4 642 4078 87 16 2 chr1 7526622 7527188 -189668244 - L1Md_F2 LINE L1 -12 6570 5997 4 642 1883 62 0 0 chr1 7527189 7527432 -189668000 + L1Md_F2 LINE L1 5725 5967 -615 4 642 2903 116 32 0 chr1 7527636 7528077 -189667355 + L1_Mm LINE L1 4797 5251 -632 4 642 679 146 35 19 chr1 7528219 7528364 -189667068 - MT2B2 LTR ERVL -382 151 1 4 642 26 0 0 0 chr1 7528653 7528679 -189666753 + AT_rich Low_complexity Low_complexity 1 26 0 4 642 8180 43 3 1 chr1 7528679 7529975 -189665457 - L1Md_F2 LINE L1 -2 6580 5280 4 642 1104 41 0 52 chr1 7529973 7530127 -189665305 - L1Md_F2 LINE L1 -776 5107 4962 4 642 10714 66 1 2 chr1 7530124 7531518 -189663914 + L1Md_F2 LINE L1 4194 5586 -297 4 642 8381 34 1 1 chr1 7531518 7532514 -189662918 + L1Md_F2 LINE L1 5587 6582 0 4 642 1748 263 16 33 chr1 7532673 7533126 -189662306 - RLTR17 LTR ERVK -247 445 1 5 642 484 55 0 40 chr1 7533946 7534021 -189661411 - L1Md_F2 LINE L1 -8 6574 6503 5 642 198 0 51 51 chr1 7534277 7534316 -189661116 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 642 3387 117 19 2 chr1 7536225 7536747 -189658685 - Lx2 LINE L1 -578 6419 5889 5 642 186 43 0 0 chr1 7536936 7536959 -189658473 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 642 243 0 0 0 chr1 7537712 7537739 -189657693 + (A)n Simple_repeat Simple_repeat 1 27 0 5 642 1852 170 9 9 chr1 7537786 7538112 -189657320 + ORR1A3 LTR MaLR 1 326 0 5 642 180 389 42 0 chr1 7538494 7538566 -189656866 + MIR SINE MIR 78 152 -110 5 642 27 29 0 0 chr1 7539019 7539053 -189656379 + AT_rich Low_complexity Low_complexity 1 34 0 5 642 594 284 0 39 chr1 7539316 7539470 -189655962 + B1F SINE Alu 2 149 0 5 642 693 0 0 0 chr1 7539901 7539978 -189655454 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 642 2765 148 37 41 chr1 7540215 7540778 -189654654 - RLTR31_Mm LTR ERVK 0 561 1 6 642 267 20 0 91 chr1 7540793 7540848 -189654584 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 6 642 1193 48 0 7 chr1 7540848 7540996 -189654436 - B1_Mus1 SINE Alu 0 148 2 6 642 743 124 5 68 chr1 7541677 7541868 -189653564 + GA-rich Low_complexity Low_complexity 2 180 0 6 642 788 304 5 5 chr1 7541911 7542126 -189653306 - B3 SINE B2 0 216 2 6 642 1402 88 36 0 chr1 7542716 7542910 -189652522 + MT2C_Mm LTR ERVL 275 475 0 6 642 14657 171 32 40 chr1 7542910 7544886 -189650546 - L1_Mm LINE L1 -1181 4702 2716 6 642 396 0 0 0 chr1 7544886 7544930 -189650502 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 6 642 14657 171 32 40 chr1 7544930 7546161 -189649271 - L1_Mm LINE L1 -3168 2715 1523 6 642 951 241 40 54 chr1 7546166 7546564 -189648868 + RLTR31_Mm LTR ERVK 131 514 -43 6 642 368 77 0 3 chr1 7546571 7546638 -189648794 - L1_Mur1 LINE L1 -4453 1433 1368 7 642 5088 131 38 0 chr1 7546637 7547421 -189648011 - L1VL2 LINE L1 -5388 947 134 7 642 1486 212 63 28 chr1 7547427 7547717 -189647715 + RLTR11A LTR ERVK 150 445 -83 7 642 258 81 0 0 chr1 7547717 7547754 -189647678 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 642 1486 212 63 28 chr1 7547754 7547827 -189647605 + RLTR11A LTR ERVK 446 526 -2 7 642 246 319 0 0 chr1 7547832 7547901 -189647531 + GA-rich Low_complexity Low_complexity 1 69 0 7 642 8132 169 21 21 chr1 7547917 7548232 -189647200 - Lx4A LINE L1 -2 7056 6732 7 642 8311 30 4 1 chr1 7548232 7549207 -189646225 - RLTR13A3 LTR ERVK 0 978 1 7 642 8132 161 24 17 chr1 7549207 7550452 -189644980 - Lx4A LINE L1 -327 6731 5481 7 642 488 16 16 0 chr1 7550683 7550744 -189644688 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 642 357 24 0 0 chr1 7550744 7550785 -189644647 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 642 192 40 0 0 chr1 7550980 7551005 -189644427 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7 642 3790 181 20 11 chr1 7551014 7551712 -189643720 - Lx4B LINE L1 -31 7027 6324 8 642 2945 222 31 99 chr1 7553702 7553771 -189641661 + RLTR40 LTR ERVK 1 72 -745 8 642 2753 66 141 139 chr1 7553771 7554282 -189641150 - RLTR1B LTR ERV1 0 512 1 8 642 2945 222 31 99 chr1 7554282 7555078 -189640354 + RLTR40 LTR ERVK 73 807 -10 8 642 245 316 38 0 chr1 7556804 7556883 -189638549 + ID4_ SINE ID 2 83 0 8 642 1035 146 18 0 chr1 7557872 7558037 -189637395 + ORR1A3 LTR MaLR 159 326 0 8 642 22 56 0 0 chr1 7558168 7558204 -189637228 + AT_rich Low_complexity Low_complexity 1 36 0 8 642 29552 139 12 27 chr1 7558351 7564723 -189630709 - L1_Mus1 LINE L1 -1 6566 301 8 642 836 281 0 19 chr1 7565046 7565253 -189630179 + B3 SINE B2 3 205 -11 8 642 305 305 69 23 chr1 7565477 7565608 -189629824 - L2 LINE L2 -1172 2247 2111 8 642 194 410 41 33 chr1 7568688 7568809 -189626623 - MIRm SINE MIR 0 276 155 8 642 183 329 101 0 chr1 7568881 7568960 -189626472 - L2b LINE L2 -204 3171 3085 9 642 4669 132 45 34 chr1 7569015 7570505 -189624927 + L1VL2 LINE L1 128 1634 -1981 9 642 2838 251 25 65 chr1 7570505 7571525 -189623907 + RMER17B LTR ERVK 1 860 0 9 642 19065 178 15 10 chr1 7571533 7576234 -189619198 + Lx LINE L1 1922 6644 -10 9 642 2086 152 41 44 chr1 7576560 7576973 -189618459 + RLTR9B2 LTR ERVK 1 412 -8 9 642 469 210 42 0 chr1 7577636 7577755 -189617677 + Lx9 LINE L1 7513 7636 -8 9 642 220 333 13 53 chr1 7578032 7578108 -189617324 - B4A SINE B4 -197 95 23 9 642 306 277 0 0 chr1 7578046 7578111 -189617321 - BC1_Mm scRNA scRNA -69 83 19 9 642 945 96 0 62 chr1 7578685 7578830 -189616602 + B1_Mm SINE Alu 2 137 -10 9 642 225 185 18 18 chr1 7579028 7579083 -189616349 + L1M2 LINE L1 5878 5932 -368 9 642 224 407 0 0 chr1 7579089 7579207 -189616225 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 642 1600 229 18 68 chr1 7579207 7579370 -189616062 + ORR1D1 LTR MaLR 1 156 -218 1 642 2779 116 47 21 chr1 7579370 7579839 -189615593 - RLTR45 LTR ERVK -1 481 1 1 642 1600 229 18 68 chr1 7579839 7580069 -189615363 + ORR1D1 LTR MaLR 157 374 0 1 642 351 45 28 56 chr1 7580076 7580147 -189615285 + (TATG)n Simple_repeat Simple_repeat 2 70 0 1 642 206 217 22 0 chr1 7581131 7581177 -189614255 + GA-rich Low_complexity Low_complexity 3 49 0 1 642 197 172 16 0 chr1 7582319 7582383 -189613049 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 642 468 163 0 30 chr1 7582621 7582722 -189612710 - L1Md_F3 LINE L1 -7 6577 6480 1 642 182 325 115 41 chr1 7583379 7583501 -189611931 - L4 LINE RTE -1410 619 489 1 642 210 143 0 0 chr1 7583794 7583829 -189611603 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 642 663 328 28 12 chr1 7584026 7584273 -189611159 - Lx7 LINE L1 -396 7300 7050 1 642 1224 285 34 75 chr1 7584995 7585438 -189609994 - Lx7 LINE L1 -650 7046 6622 1 642 495 289 143 33 chr1 7587020 7587431 -189608001 + L1MC LINE L1 3497 3947 -2199 1 642 210 158 0 0 chr1 7588749 7588787 -189606645 + T-rich Low_complexity Low_complexity 1 38 0 1 642 25 31 0 0 chr1 7592141 7592173 -189603259 + AT_rich Low_complexity Low_complexity 1 32 0 1 642 2652 269 23 39 chr1 7592216 7593255 -189602177 - L1_Rod LINE L1 -2627 3220 2198 1 642 2797 246 30 69 chr1 7593245 7593303 -189602129 - Lx6 LINE L1 0 7460 7403 1 642 1810 165 123 88 chr1 7593303 7593734 -189601698 - RLTR41 LTR ERV1 0 446 1 1 642 2797 246 30 69 chr1 7593734 7594515 -189600917 - Lx6 LINE L1 -58 7402 6654 1 642 1790 279 46 97 chr1 7594515 7594794 -189600638 - L1_Rod LINE L1 -3637 2210 1940 1 642 474 49 0 0 chr1 7594794 7594855 -189600577 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 642 1790 279 46 97 chr1 7594855 7595291 -189600141 - L1_Rod LINE L1 -3908 1939 1559 1 642 3430 25 2 0 chr1 7595291 7595686 -189599746 - MTA_Mm LTR MaLR 0 396 1 1 642 9044 36 5 1 chr1 7595686 7596780 -189598652 - MTA_Mm-int LTR MaLR 0 1098 1 1 642 3430 25 2 0 chr1 7596780 7597175 -189598257 - MTA_Mm LTR MaLR 0 396 1 1 642 1790 279 46 97 chr1 7597175 7597371 -189598061 - L1_Rod LINE L1 -4289 1558 1350 1 642 1835 214 32 65 chr1 7597371 7597832 -189597600 - RLTR41 LTR ERV1 0 446 1 1 642 1790 278 124 34 chr1 7597832 7598212 -189597220 - L1_Rod LINE L1 -6259 1349 936 1 642 2760 24 0 38 chr1 7598277 7598617 -189596815 + IAPLTR2b LTR ERVK 1 327 0 1 642 1002 116 87 0 chr1 7598618 7598790 -189596642 + IAPEz-int LTR ERVK 9 195 -6286 1 642 226 286 0 0 chr1 7598790 7598839 -189596593 + RLTR27 LTR ERVK 223 271 -38 1 642 4847 71 82 56 chr1 7598843 7599795 -189595637 + IAPEz-int LTR ERVK 94 994 -5487 1 642 321 140 0 0 chr1 7599796 7599853 -189595579 + B1_Mur4 SINE Alu 1 57 -93 1 642 1826 72 17 0 chr1 7599858 7600094 -189595338 + IAPEY3-int LTR ERVK 2258 2497 -5183 1 642 13810 78 9 7 chr1 7600074 7601912 -189593520 + IAPEz-int LTR ERVK 4639 6479 -2 1 80 2695 37 0 38 chr1 7601914 7602254 -189593178 + IAPLTR2b LTR ERVK 1 327 0 1 643 351 243 47 134 chr1 7602297 7602339 -189593093 + MT2B LTR ERVL 121 240 -361 1 643 896 149 0 51 chr1 7602339 7602429 -189593003 + B1_Mus1 SINE Alu 1 89 -59 1 643 2290 133 144 2 chr1 7602429 7602851 -189592581 - RLTR45 LTR ERVK 0 482 1 1 643 351 243 47 134 chr1 7602851 7602889 -189592543 + MT2B LTR ERVL 241 276 -325 1 643 896 149 0 51 chr1 7602889 7602916 -189592516 + B1_Mus1 SINE Alu 90 148 0 1 643 420 262 41 0 chr1 7602916 7603038 -189592394 + L1_Rod LINE L1 3920 4046 -1801 1 643 333 338 23 28 chr1 7604267 7604483 -189590949 - MER63D DNA AcHobo -702 359 145 1 643 2920 80 22 2 chr1 7604649 7605062 -189590370 - BGLII LTR ERVK 0 421 1 1 643 324 106 0 0 chr1 7605602 7605649 -189589783 + RLTR31_Mm LTR ERVK 1 47 -514 1 643 2750 22 3 0 chr1 7605650 7605971 -189589461 + RLTRETN_Mm LTR ERVK 1 322 0 1 643 40834 23 13 7 chr1 7605971 7610786 -189584646 + MMETn-int LTR ERVK 1 4844 0 1 643 2782 16 3 0 chr1 7610786 7611107 -189584325 + RLTRETN_Mm LTR ERVK 1 322 0 1 643 2143 164 55 141 chr1 7611107 7611675 -189583757 + RLTR31_Mm LTR ERVK 43 561 0 1 643 1248 305 116 20 chr1 7611793 7612473 -189582959 - Lx7 LINE L1 -331 7142 6394 1 643 14778 106 27 50 chr1 7612642 7614812 -189580620 + L1VL4 LINE L1 369 2437 -1122 1 643 273 57 0 0 chr1 7614812 7614847 -189580585 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 643 14778 99 33 64 chr1 7614847 7615949 -189579483 + L1VL4 LINE L1 2438 3555 -4 1 643 1150 282 62 62 chr1 7615996 7616703 -189578729 - L1_Mur3 LINE L1 -2965 2915 2209 1 643 12805 101 11 2 chr1 7616713 7619397 -189576035 - L1_Mus1 LINE L1 -3 6564 3855 1 643 1973 333 58 43 chr1 7619485 7620484 -189574948 + MMVL30-int LTR ERV1 2227 3213 -1850 1 643 441 0 0 0 chr1 7620484 7620533 -189574899 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 643 3225 234 50 20 chr1 7620533 7621565 -189573867 + MMVL30-int LTR ERV1 2877 4273 -790 1 643 257 138 289 36 chr1 7621557 7621640 -189573792 + RLTR6-int LTR ERV1 7613 7716 -62 1 643 243 79 0 0 chr1 7622131 7622169 -189573263 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 643 1059 205 23 5 chr1 7622562 7622782 -189572650 + URR1B DNA MER1_type 2 225 0 1 643 723 104 0 0 chr1 7622904 7623010 -189572422 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 1 643 1115 286 40 28 chr1 7623036 7623360 -189572072 + MTEb LTR MaLR 1 328 -51 1 643 351 0 0 0 chr1 7623439 7623478 -189571954 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 643 46 33 0 0 chr1 7623478 7623538 -189571894 + AT_rich Low_complexity Low_complexity 1 60 0 1 643 13217 150 96 10 chr1 7624375 7627658 -189567774 + L1Md_F LINE L1 536 4098 -1785 1 643 1907 67 0 76 chr1 7627659 7627949 -189567483 + L1Md_F2 LINE L1 6311 6578 -4 1 643 2046 66 51 24 chr1 7627949 7628243 -189567189 - LTRIS2 LTR ERV1 -262 302 1 1 643 3345 114 23 32 chr1 7628243 7628916 -189566516 + RLTR13D4 LTR ERVK 99 1033 0 1 643 4151 80 36 28 chr1 7629029 7629611 -189565821 + LTRIS_Mus LTR ERV1 1 587 0 1 643 997 265 76 49 chr1 7629644 7629998 -189565434 - MTE2a LTR MaLR -44 375 10 1 643 1245 268 26 35 chr1 7631906 7632268 -189563164 + MTE2a LTR MaLR 35 405 -14 1 643 252 0 0 0 chr1 7632323 7632351 -189563081 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 643 569 312 40 85 chr1 7633034 7633258 -189562174 - B3A SINE B2 0 216 3 1 643 5412 47 3 3 chr1 7633554 7634222 -189561210 + L1Md_F2 LINE L1 5901 6568 -14 1 643 1787 226 47 2 chr1 7634327 7634730 -189560702 + MTC LTR MaLR 1 421 0 1 643 2846 246 37 26 chr1 7634730 7635504 -189559928 + MTC-int LTR MaLR 1 784 -314 1 643 1656 212 84 45 chr1 7635478 7635858 -189559574 + MTC LTR MaLR 27 421 0 1 643 266 217 137 32 chr1 7639281 7639405 -189556027 - RLTR19-int LTR ERVK -2364 3773 3637 1 643 236 30 30 0 chr1 7639542 7639575 -189555857 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 643 1858 226 15 12 chr1 7639831 7640243 -189555189 - ETnERV2-int LTR ERVK -348 7058 6646 1 643 470 316 44 27 chr1 7640259 7640498 -189554934 - MERVK26-int LTR ERVK -310 6609 6497 1 643 284 291 25 25 chr1 7640498 7640618 -189554814 - MER83A-int LTR ERV1 -529 3756 3637 1 643 470 316 44 27 chr1 7640618 7640633 -189554799 - MERVK26-int LTR ERVK -310 6496 6489 1 643 213 39 0 0 chr1 7640955 7640981 -189554451 + (A)n Simple_repeat Simple_repeat 1 26 0 1 643 2452 32 42 6 chr1 7641208 7641520 -189553912 - L1Md_F2 LINE L1 0 6582 6260 1 643 463 205 35 93 chr1 7642401 7642573 -189552859 - RLTR43A LTR ERVK -2 362 201 1 643 4226 141 109 27 chr1 7644073 7644911 -189550521 - RMER17A2 LTR ERVK 0 906 1 1 643 453 172 8 62 chr1 7644911 7645041 -189550391 + Lx3_Mus LINE L1 6882 7004 -5 1 643 229 259 49 54 chr1 7645963 7646147 -189549285 - RLTR15 LTR ERVK -26 333 151 1 643 385 242 90 39 chr1 7646229 7646384 -189549048 - RLTR15 LTR ERVK -196 163 1 1 643 260 228 75 50 chr1 7646465 7646585 -189548847 - MYSERV6-int LTR ERVK -289 8670 8548 1 643 217 325 41 94 chr1 7647084 7647254 -189548178 + L4 LINE RTE 1726 1886 -143 1 643 7574 97 6 11 chr1 7647419 7648664 -189546768 - MusHAL1 LINE L1 -1467 1245 7 1 643 2876 207 65 28 chr1 7648637 7649457 -189545975 - L1Md_F LINE L1 -5380 1139 290 1 643 1068 218 79 47 chr1 7649648 7650028 -189545404 - RLTR42-int LTR ERVK -4026 1496 1105 1 643 186 43 0 0 chr1 7651072 7651095 -189544337 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 1 643 189 0 0 0 chr1 7651326 7651347 -189544085 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 643 231 169 0 63 chr1 7652027 7652090 -189543342 + A-rich Low_complexity Low_complexity 2 60 0 1 643 21 0 0 0 chr1 7652551 7652572 -189542860 + AT_rich Low_complexity Low_complexity 1 21 0 1 643 23 0 0 0 chr1 7652727 7652750 -189542682 + AT_rich Low_complexity Low_complexity 1 23 0 1 643 298 125 0 0 chr1 7653848 7653888 -189541544 + B1_Mus1 SINE Alu 1 40 -108 1 643 25 90 0 0 chr1 7655239 7655306 -189540126 + AT_rich Low_complexity Low_complexity 1 67 0 1 643 371 319 77 5 chr1 7655833 7656028 -189539404 - Lx7 LINE L1 -361 7335 7127 1 643 1020 228 0 14 chr1 7656126 7656348 -189539084 - Lx7 LINE L1 -594 7102 6884 1 643 396 195 24 0 chr1 7656355 7656437 -189538995 - Lx6 LINE L1 -1288 6172 6089 1 643 1967 230 15 3 chr1 7656436 7657024 -189538408 + Lx5 LINE L1 5417 6016 -1034 1 643 262 167 0 0 chr1 7657059 7657101 -189538331 - ORR1B1 LTR MaLR -8 386 345 1 643 192 77 0 0 chr1 7657101 7657127 -189538305 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 643 2625 140 4 48 chr1 7657139 7657665 -189537767 - Lx2 LINE L1 -519 6478 5976 1 643 1231 233 13 0 chr1 7657667 7657899 -189537533 - ORR1B1 LTR MaLR -61 333 99 1 643 2545 166 23 78 chr1 7657913 7658555 -189536877 - RMER17A2 LTR ERVK -12 894 288 1 643 1576 173 65 22 chr1 7658538 7658999 -189536433 - RMER17A2 LTR ERVK -328 481 1 1 643 524 132 24 0 chr1 7658999 7659078 -189536354 - ORR1B1 LTR MaLR -313 81 1 1 643 333 47 0 0 chr1 7659599 7659642 -189535790 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 643 298 221 11 7 chr1 7659739 7659815 -189535617 - MTD LTR MaLR 0 419 343 1 643 1690 262 12 14 chr1 7659815 7660237 -189535195 - MTC LTR MaLR 0 421 1 1 643 426 306 151 64 chr1 7660237 7660563 -189534869 - MTD LTR MaLR -71 350 1 1 643 594 347 77 39 chr1 7660584 7661067 -189534365 - L1ME2 LINE L1 -84 6080 5580 1 643 3124 219 20 36 chr1 7661311 7661930 -189533502 - Lx5 LINE L1 -3 7047 6445 1 643 1483 182 64 96 chr1 7661930 7662336 -189533096 + RLTR9C LTR ERVK 1 393 0 1 643 3124 219 20 36 chr1 7662336 7662457 -189532975 - Lx5 LINE L1 -606 6444 6319 1 643 1249 206 35 14 chr1 7662505 7662791 -189532641 - RMER17D2 LTR ERVK -23 786 495 1 643 5108 193 40 18 chr1 7662793 7663980 -189531452 - Lx5 LINE L1 -66 5811 4599 1 643 318 291 96 69 chr1 7663980 7664168 -189531264 - RLTR25A LTR ERVK 0 1103 911 1 643 3569 161 30 16 chr1 7664650 7665356 -189530076 - Lx5 LINE L1 -1270 4607 3892 1 643 585 0 0 0 chr1 7665477 7665542 -189529890 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1 643 1253 97 8 0 chr1 7665542 7665896 -189529536 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 1 643 234 0 0 0 chr1 7665896 7665922 -189529510 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 1 643 204 158 0 0 chr1 7665922 7665960 -189529472 + CT-rich Low_complexity Low_complexity 2 39 0 1 643 928 152 11 0 chr1 7665961 7666017 -189529415 + polypyrimidine Low_complexity Low_complexity 125 180 0 1 643 1020 132 0 0 chr1 7666017 7666183 -189529249 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1 643 928 152 11 0 chr1 7666183 7666303 -189529129 + polypyrimidine Low_complexity Low_complexity 3 124 0 2 643 1794 143 24 51 chr1 7666554 7666886 -189528546 - ORR1A3 LTR MaLR -3 323 1 2 643 974 177 23 0 chr1 7667232 7667407 -189528025 - B2_Mm2 SINE B2 -9 186 8 2 643 203 86 0 79 chr1 7668158 7668196 -189527236 + T-rich Low_complexity Low_complexity 1 35 0 2 643 494 259 19 0 chr1 7668196 7668304 -189527128 - ID_B1 SINE B4 -1 223 114 2 643 2790 92 110 25 chr1 7669107 7669554 -189525878 - LTRIS2 LTR ERV1 -79 485 1 2 643 701 195 155 0 chr1 7669555 7669755 -189525677 - MuRRS4-int LTR ERV1 -42 5021 4791 2 643 7410 125 55 35 chr1 7669754 7672137 -189523295 - MuRRS4-int LTR ERV1 -792 4271 1128 2 643 2261 259 86 37 chr1 7672134 7672951 -189522481 - MuRRS4-int LTR ERV1 -3447 1616 760 2 643 4399 137 23 24 chr1 7672942 7673721 -189521711 - RMER16-int LTR ERVK -3962 1444 667 2 643 717 178 115 0 chr1 7673717 7673874 -189521558 - RMER16-int LTR ERVK -5076 330 156 2 643 1202 66 6 12 chr1 7674578 7674747 -189520685 - LTRIS2 LTR ERV1 0 564 397 2 643 207 0 0 0 chr1 7674753 7674776 -189520656 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 643 483 49 24 24 chr1 7674776 7674853 -189520579 - L1Md_F2 LINE L1 -19 6563 6486 2 643 22810 151 16 40 chr1 7675533 7676861 -189518571 - L1_Mus3 LINE L1 -4 6634 5304 2 643 1198 100 33 0 chr1 7676861 7677041 -189518391 - B2_Mm2 SINE B2 -9 186 1 2 643 22810 151 16 40 chr1 7677041 7682060 -189513372 - L1_Mus3 LINE L1 -4 5303 272 2 643 1311 221 185 6 chr1 7682582 7682933 -189512499 - MTD LTR MaLR -15 404 1 2 643 2131 109 135 3 chr1 7683264 7683604 -189511828 - L1_Mus3 LINE L1 -3 6635 6251 2 643 216 67 0 0 chr1 7684848 7684878 -189510554 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 643 246 304 26 9 chr1 7684887 7685003 -189510429 + Lx7 LINE L1 7563 7680 -16 2 643 462 120 0 0 chr1 7685696 7685771 -189509661 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 643 213 39 0 0 chr1 7685894 7685920 -189509512 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 643 1663 11 5 5 chr1 7686005 7686198 -189509234 - B2_Mm1a SINE B2 0 193 1 2 643 25 0 0 0 chr1 7687770 7687795 -189507637 + AT_rich Low_complexity Low_complexity 1 25 0 2 643 585 306 42 47 chr1 7687806 7687998 -189507434 + B4 SINE B4 7 197 -95 2 643 1077 252 89 20 chr1 7689436 7689784 -189505648 - ORR1D1 LTR MaLR 0 374 3 2 643 21 57 0 0 chr1 7690046 7690081 -189505351 + AT_rich Low_complexity Low_complexity 1 35 0 2 643 21 89 0 0 chr1 7690809 7690865 -189504567 + AT_rich Low_complexity Low_complexity 1 56 0 2 643 677 308 73 42 chr1 7690976 7691332 -189504100 - MLT1B LTR MaLR 0 390 24 2 643 1607 184 301 15 chr1 7691571 7692046 -189503386 - RMER19C LTR ERVK 0 611 1 2 643 23147 60 1 0 chr1 7692100 7695912 -189499520 - L1Md_F2 LINE L1 -6 6576 2761 2 643 533 202 200 48 chr1 7695912 7696182 -189499250 - RLTR6_Mm LTR ERV1 -68 586 276 2 643 833 123 12 99 chr1 7696195 7696366 -189499066 - RLTR6_Mm LTR ERV1 -498 156 1 2 643 8598 44 36 2 chr1 7696366 7698491 -189496941 - MMVL30-int LTR ERV1 0 3698 1501 2 643 369 0 0 0 chr1 7698635 7698676 -189496756 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 643 553 150 53 15 chr1 7698777 7698974 -189496458 - MMVL30-int LTR ERV1 -2115 1184 1022 2 643 4985 81 17 12 chr1 7699150 7699900 -189495532 - MMVL30-int LTR ERV1 -2245 1453 700 2 643 905 180 33 72 chr1 7699947 7700279 -189495153 - MMVL30-int LTR ERV1 -7105 347 4 2 643 585 232 204 29 chr1 7700283 7700562 -189494870 - RLTR6_Mm LTR ERV1 -51 603 276 2 643 805 136 12 99 chr1 7700575 7700746 -189494686 - RLTR6_Mm LTR ERV1 -498 156 1 2 643 11030 92 0 37 chr1 7700746 7703298 -189492134 - L1Md_F LINE L1 -3121 2762 307 2 643 1225 175 5 5 chr1 7703340 7703564 -189491868 + URR1B DNA MER1_type 2 225 0 2 643 1151 173 62 26 chr1 7704138 7704364 -189491068 - RLTR23 LTR ERV1 -7 423 190 2 643 1374 148 0 9 chr1 7704452 7704677 -189490755 - Lx2 LINE L1 0 6997 6775 2 643 8610 158 11 6 chr1 7704677 7706414 -189489018 - Lx2 LINE L1 -354 6643 4907 2 643 3062 81 2 32 chr1 7706414 7706848 -189488584 - BGLII LTR ERVK 0 421 1 2 643 8610 177 18 10 chr1 7706848 7707632 -189487800 - Lx2 LINE L1 -977 4906 4104 2 643 4362 96 18 34 chr1 7707656 7708422 -189487010 + MusHAL1 LINE L1 574 1327 -1385 2 643 16302 23 0 0 chr1 7708421 7711096 -189484336 - L1Md_T LINE L1 0 6582 3909 2 643 6843 173 8 3 chr1 7711095 7712496 -189482936 + L1_Mur1 LINE L1 2520 3927 -1959 2 643 245 51 26 0 chr1 7712966 7713005 -189482427 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 643 6276 69 7 20 chr1 7714460 7715510 -189479922 - L1_Mus1 LINE L1 -121 6446 5409 2 643 22 35 0 0 chr1 7716355 7716384 -189479048 + AT_rich Low_complexity Low_complexity 1 29 0 2 643 672 209 320 100 chr1 7716416 7716719 -189478713 + ORR1D1 LTR MaLR 1 369 -5 2 643 307 296 5 49 chr1 7716734 7716919 -189478513 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 2 643 207 386 12 12 chr1 7716836 7717001 -189478431 + (TATG)n Simple_repeat Simple_repeat 4 168 0 2 643 272 261 57 21 chr1 7717632 7717773 -189477659 + Lx7 LINE L1 7520 7665 -31 2 643 37 39 0 0 chr1 7717783 7717834 -189477598 + AT_rich Low_complexity Low_complexity 1 51 0 2 643 1008 238 61 4 chr1 7717875 7718137 -189477295 - Lx2B LINE L1 -231 6769 6493 2 643 3379 196 33 4 chr1 7718146 7718877 -189476555 - Lx4B LINE L1 -673 6385 5634 2 643 216 175 0 0 chr1 7720102 7720142 -189475290 + T-rich Low_complexity Low_complexity 3 42 0 2 643 760 119 41 6 chr1 7720144 7720173 -189475259 + polypyrimidine Low_complexity Low_complexity 143 176 0 2 643 1338 73 0 0 chr1 7720173 7720352 -189475080 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 2 643 760 119 41 6 chr1 7720352 7720491 -189474941 + CT-rich Low_complexity Low_complexity 2 142 0 2 643 230 286 24 0 chr1 7721098 7721182 -189474250 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 643 513 104 0 0 chr1 7721185 7721262 -189474170 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 643 368 223 135 20 chr1 7721281 7721401 -189474031 - B1_Mur4 SINE Alu 0 150 4 2 643 414 39 0 0 chr1 7721669 7721721 -189473711 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 643 221 370 0 15 chr1 7721723 7721860 -189473572 + (TATG)n Simple_repeat Simple_repeat 3 137 0 2 643 273 251 68 0 chr1 7721892 7722005 -189473427 - L1M2 LINE L1 -385 5906 5783 2 643 238 275 43 0 chr1 7723786 7723855 -189471577 + ID2 SINE ID 2 73 -10 2 643 25 31 0 0 chr1 7725981 7726013 -189469419 + AT_rich Low_complexity Low_complexity 1 32 0 2 643 308 111 16 0 chr1 7726195 7726258 -189469174 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 643 609 14 0 0 chr1 7726457 7726527 -189468905 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 643 4532 169 93 7 chr1 7726545 7727513 -189467919 - Lx3B LINE L1 -3 6970 5920 2 643 649 236 13 53 chr1 7727513 7727665 -189467767 - RLTR26 LTR ERVK 0 642 497 2 643 2449 101 96 11 chr1 7727697 7728156 -189467276 - MusHAL1 LINE L1 -1082 1630 1133 2 643 1347 122 8 8 chr1 7728219 7728458 -189466974 - MusHAL1 LINE L1 -1275 1437 1199 2 643 4765 109 27 1 chr1 7728453 7729222 -189466210 - MusHAL1 LINE L1 -807 1905 1117 2 643 1233 170 122 23 chr1 7729227 7729638 -189465794 - RLTR1B LTR ERV1 -76 436 1 2 643 20201 48 42 15 chr1 7729638 7732142 -189463290 - RLTR1B-int LTR ERV1 0 3299 606 2 643 257 0 30 0 chr1 7732142 7732175 -189463257 + (TGG)n Simple_repeat Simple_repeat 3 36 0 2 643 20201 51 49 17 chr1 7732175 7732797 -189462635 - RLTR1B-int LTR ERV1 -2694 605 6 2 643 1009 166 34 19 chr1 7732797 7733047 -189462385 - RLTR1B LTR ERV1 -65 589 334 2 80 6570 99 26 0 chr1 7733048 7734105 -189461327 - MusHAL1 LINE L1 -1602 1110 26 2 644 914 315 74 10 chr1 7734350 7734767 -189460665 + Lx8 LINE L1 6911 7354 -119 2 644 323 344 32 136 chr1 7735097 7735376 -189460056 - RLTR26 LTR ERVK -225 417 168 2 644 198 0 0 0 chr1 7735430 7735452 -189459980 + (T)n Simple_repeat Simple_repeat 1 22 0 2 644 1266 27 0 0 chr1 7735452 7735598 -189459834 - B1_Mus2 SINE Alu 0 147 2 2 644 1211 170 18 26 chr1 7735751 7735980 -189459452 - RLTR1 LTR ERV1 0 624 398 2 644 381 43 0 0 chr1 7736045 7736092 -189459340 + (A)n Simple_repeat Simple_repeat 1 47 0 2 644 878 178 5 140 chr1 7736092 7736314 -189459118 - RLTR1 LTR ERV1 -186 326 135 2 644 196 91 45 0 chr1 7736385 7736429 -189459003 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 2 644 2523 55 3 6 chr1 7736441 7736767 -189458665 - L1Md_F2 LINE L1 0 6582 6258 2 644 1109 237 41 0 chr1 7738185 7738429 -189457003 - RMER6D LTR ERVK -6 714 461 2 644 1044 284 185 21 chr1 7738429 7738915 -189456517 + RMER2 LTR ERV1 1 566 -1 2 644 2196 208 9 14 chr1 7738916 7739351 -189456081 - RMER6D LTR ERVK -255 465 33 2 644 367 62 49 12 chr1 7740184 7740265 -189455167 + (TTTG)n Simple_repeat Simple_repeat 4 87 0 2 644 1119 82 7 0 chr1 7740265 7740411 -189455021 - B1_Mus2 SINE Alu 0 147 1 2 644 667 254 94 49 chr1 7740416 7740660 -189454772 + RLTR20B3 LTR ERVK 25 279 -298 2 644 333 186 0 0 chr1 7740664 7740734 -189454698 + GA-rich Low_complexity Low_complexity 3 72 0 2 644 1691 177 68 23 chr1 7740734 7741087 -189454345 + RLTR20B3 LTR ERVK 188 556 -21 2 644 417 20 0 0 chr1 7741679 7741729 -189453703 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 644 584 303 123 64 chr1 7742831 7743173 -189452259 - MTE2b LTR MaLR -9 370 9 2 644 186 43 0 0 chr1 7743250 7743273 -189452159 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 2 644 324 0 0 0 chr1 7743277 7743313 -189452119 + (CATA)n Simple_repeat Simple_repeat 1 36 0 2 644 4776 61 0 2 chr1 7744921 7745559 -189449873 + L1Md_F2 LINE L1 4950 5586 -297 2 644 7771 48 13 16 chr1 7745560 7746547 -189448885 + L1Md_F2 LINE L1 5588 6571 -11 2 644 393 22 0 0 chr1 7746679 7746725 -189448707 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 644 951 282 45 32 chr1 7746825 7747146 -189448286 + MTC-int LTR MaLR 241 545 -713 2 644 441 0 0 0 chr1 7747166 7747215 -189448217 + (TATAG)n Simple_repeat Simple_repeat 5 53 0 2 644 5630 154 50 41 chr1 7747217 7748318 -189447114 + RLTR13D3 LTR ERVK 4 1114 0 2 644 325 262 32 8 chr1 7748328 7748451 -189446981 - Lx9 LINE L1 -142 7502 7377 2 644 3210 176 25 17 chr1 7749017 7749605 -189445827 + Lx2 LINE L1 6405 6997 0 2 644 1008 239 108 7 chr1 7749940 7750226 -189445206 - Lx9 LINE L1 -257 7387 7073 2 644 410 218 105 0 chr1 7750226 7750350 -189445082 + MTC-int LTR MaLR 1120 1256 -2 2 644 791 21 10 0 chr1 7750359 7750456 -189444976 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 644 1086 301 43 9 chr1 7750482 7750827 -189444605 + MTD LTR MaLR 45 401 -18 3 644 248 184 20 0 chr1 7750827 7750876 -189444556 + MTD LTR MaLR 368 417 -2 3 644 346 303 94 21 chr1 7752291 7752483 -189442949 + Lx7 LINE L1 6815 7020 -676 3 644 237 128 0 0 chr1 7752489 7752536 -189442896 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 644 417 307 140 18 chr1 7752597 7752882 -189442550 + Lx8 LINE L1 7125 7444 -29 3 644 2196 170 3 6 chr1 7752961 7753327 -189442105 - RLTR17 LTR ERVK -327 365 1 3 644 6280 199 50 49 chr1 7753327 7755162 -189440270 - RMER3D-int LTR ERVK 0 2842 485 3 644 1258 230 159 45 chr1 7755180 7755716 -189439716 - RMER3D-int LTR ERVK -2238 604 8 3 644 2258 166 129 0 chr1 7755769 7756179 -189439253 - RLTR17 LTR ERVK -59 633 171 3 644 180 0 0 0 chr1 7756889 7756909 -189438523 + (T)n Simple_repeat Simple_repeat 1 20 0 3 644 328 279 0 6 chr1 7757098 7757186 -189438246 - ID4 SINE ID -62 90 6 3 644 21 0 0 0 chr1 7757348 7757369 -189438063 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 231 103 0 0 chr1 7759465 7759504 -189435928 + (T)n Simple_repeat Simple_repeat 1 39 0 3 644 301 285 62 49 chr1 7759566 7759710 -189435722 + MTE-int LTR MaLR 343 488 -1092 3 644 2770 158 20 37 chr1 7759722 7759742 -189435690 - RLTR11A LTR ERVK -3 525 510 3 644 1137 121 5 27 chr1 7759742 7759929 -189435503 + B2_Mm2 SINE B2 3 185 -10 3 644 2770 164 20 42 chr1 7759929 7760444 -189434988 - RLTR11A LTR ERVK -19 509 1 3 644 513 211 18 0 chr1 7760578 7760692 -189434740 - RLTR28 LTR ERVL -2 522 407 3 644 214 300 19 29 chr1 7760713 7760816 -189434616 + CT-rich Low_complexity Low_complexity 2 103 0 3 644 822 116 0 0 chr1 7760890 7761028 -189434404 + (GA)n Simple_repeat Simple_repeat 2 139 0 3 644 1994 215 14 10 chr1 7761034 7761369 -189434063 - RLTR28 LTR ERVL -104 420 85 3 644 261 0 0 0 chr1 7761369 7761398 -189434034 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 644 1994 215 14 10 chr1 7761398 7761480 -189433952 - RLTR28 LTR ERVL -440 84 1 3 644 204 40 0 0 chr1 7761949 7761974 -189433458 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 3 644 3676 54 28 0 chr1 7761979 7762440 -189432992 - L1Md_F2 LINE L1 -13 6569 6096 3 644 2312 246 72 4 chr1 7762946 7763484 -189431948 - RMER15 LTR ERVL 0 575 1 3 644 315 339 79 30 chr1 7763602 7763931 -189431501 + L1M4 LINE L1 2772 3116 -3030 3 644 584 290 37 5 chr1 7763983 7764170 -189431262 - Lx7 LINE L1 -699 6997 6805 3 644 630 39 0 0 chr1 7764652 7764729 -189430703 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 3 644 221 98 24 0 chr1 7764729 7764770 -189430662 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 3 644 992 194 22 49 chr1 7764805 7765227 -189430205 - RMER17A LTR ERVK -27 383 1 3 644 2195 186 55 51 chr1 7765227 7765520 -189429912 - RMER17A-int LTR ERVK 0 3238 2900 3 644 480 18 0 0 chr1 7765520 7765577 -189429855 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 644 2195 170 131 88 chr1 7765577 7765877 -189429555 - RMER17A-int LTR ERVK -339 2899 2607 3 644 291 182 0 18 chr1 7765877 7765933 -189429499 + LSU-rRNA_Hsa rRNA rRNA 4198 4252 -783 3 644 2195 170 131 88 chr1 7765933 7766248 -189429184 - RMER17A-int LTR ERVK -339 2606 2297 3 644 1641 134 14 125 chr1 7766252 7766611 -189428821 - RMER17A LTR ERVK 0 751 433 3 644 469 170 188 13 chr1 7766665 7766814 -189428618 + RMER17C-int LTR ERVK 488 662 -2576 3 644 3860 72 30 6 chr1 7766861 7767760 -189427672 - RMER17A-int LTR ERVK -465 1263 1 3 644 2113 134 43 40 chr1 7767760 7768119 -189427313 - RMER17A LTR ERVK 0 751 276 3 644 866 53 22 8 chr1 7768119 7768253 -189427179 + (GA)n Simple_repeat Simple_repeat 2 137 0 3 644 2113 90 6 16 chr1 7768253 7768529 -189426903 - RMER17A LTR ERVK -476 275 1 3 644 2592 111 78 5 chr1 7768535 7768960 -189426472 - RMER17A-int LTR ERVK -946 2292 1837 3 644 1191 176 117 19 chr1 7768957 7769188 -189426244 - RMER17A-int LTR ERVK -1606 1632 1386 3 644 261 0 0 0 chr1 7769188 7769217 -189426215 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 644 1191 176 117 19 chr1 7769217 7769310 -189426122 - RMER17A-int LTR ERVK -1853 1385 1277 3 644 722 142 66 8 chr1 7769618 7769739 -189425693 - 7SLRNA srpRNA srpRNA -47 267 140 3 644 372 43 0 0 chr1 7769938 7769984 -189425448 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 644 1306 222 162 87 chr1 7770138 7770471 -189424961 - RMER17A-int LTR ERVK -2576 662 264 3 644 207 0 0 0 chr1 7770471 7770494 -189424938 + (G)n Simple_repeat Simple_repeat 1 23 0 3 644 1306 222 162 87 chr1 7770494 7770758 -189424674 - RMER17A-int LTR ERVK -2975 263 21 3 644 253 243 28 14 chr1 7772282 7772353 -189423079 + MTEb LTR MaLR 294 365 -14 3 644 236 320 48 0 chr1 7772790 7772893 -189422539 + L1MDa LINE L1 378 485 -6148 3 644 7633 129 21 37 chr1 7773022 7775392 -189420040 - Lx3C LINE L1 -10 6966 4638 3 644 3329 66 28 2 chr1 7775601 7776026 -189419406 - RLTR10C LTR ERVK 0 436 1 3 644 272 252 152 22 chr1 7777039 7777177 -189418255 + L1MDa LINE L1 4496 4651 -1886 3 644 233 260 10 20 chr1 7777329 7777431 -189418001 + T-rich Low_complexity Low_complexity 4 104 0 3 644 306 280 35 70 chr1 7777559 7777674 -189417758 + ORR1E LTR MaLR 1 111 -248 3 644 926 257 9 0 chr1 7777674 7777888 -189417544 + Lx8 LINE L1 6929 7144 -329 3 644 32717 26 3 0 chr1 7778015 7782604 -189412828 - L1Md_T LINE L1 0 6582 1984 3 644 348 296 133 0 chr1 7784800 7784935 -189410497 - MLT1B LTR MaLR -167 223 71 3 644 16437 91 57 13 chr1 7785045 7788163 -189407269 - L1Md_A LINE L1 0 6582 3276 3 644 946 143 0 7 chr1 7788163 7788311 -189407121 - B1_Mus1 SINE Alu 0 148 2 3 644 16437 123 84 19 chr1 7788311 7788754 -189406678 - L1Md_A LINE L1 -2608 3275 2835 3 644 560 191 0 0 chr1 7788741 7788846 -189406586 + L1_Mur1 LINE L1 4924 5028 -858 3 644 7853 134 30 15 chr1 7788851 7790892 -189404540 + L1VL1 LINE L1 193 2268 -1430 3 644 265 281 57 19 chr1 7790889 7790994 -189404438 + Lx8 LINE L1 5648 5756 -91 3 644 6652 117 17 14 chr1 7790987 7792008 -189403424 + Lx LINE L1 5624 6647 -7 3 644 1372 210 54 12 chr1 7792203 7792535 -189402897 - Lx LINE L1 0 6654 6309 3 644 17281 194 29 120 chr1 7792535 7793765 -189401667 - L1VL4 LINE L1 -77 5809 4612 3 644 5043 34 0 0 chr1 7793765 7794361 -189401071 - L1Md_A LINE L1 -1 6581 5986 3 644 17281 184 24 102 chr1 7794361 7798814 -189396618 - L1VL4 LINE L1 -1275 4611 596 3 644 964 338 64 41 chr1 7798879 7799611 -189395821 + Lx8 LINE L1 6010 6758 -715 3 644 6778 72 46 4 chr1 7799619 7800629 -189394803 - L1Md_F2 LINE L1 -7 6575 5457 3 644 27303 92 13 2 chr1 7800618 7805234 -189390198 - L1Md_F2 LINE L1 -828 5055 387 3 644 213 39 0 0 chr1 7805268 7805294 -189390138 + (TAG)n Simple_repeat Simple_repeat 1 26 0 3 644 7502 80 4 1 chr1 7805338 7806533 -189388899 + L1_Mus1 LINE L1 5352 6549 -18 3 644 198 160 0 0 chr1 7807106 7807156 -189388276 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 644 350 325 83 19 chr1 7807228 7807385 -189388047 + MTEb LTR MaLR 209 375 -4 3 644 715 173 51 6 chr1 7807389 7807546 -189387886 + Lx3_Mus LINE L1 6838 7001 -8 3 644 204 154 18 55 chr1 7807556 7807611 -189387821 + A-rich Low_complexity Low_complexity 2 54 0 3 644 990 290 80 24 chr1 7807637 7807973 -189387459 + MTE-int LTR MaLR 31 385 -1195 3 644 968 248 125 20 chr1 7807991 7808296 -189387136 - ORR1D1 LTR MaLR -36 338 2 3 644 980 309 241 24 chr1 7808299 7808940 -189386492 + MTE-int LTR MaLR 384 1163 -417 3 644 910 283 42 0 chr1 7808942 7809154 -189386278 + ORR1D2 LTR MaLR 1 221 -149 3 644 219 36 0 0 chr1 7809352 7809380 -189386052 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 644 2714 31 22 0 chr1 7809472 7809792 -189385640 + IAPLTR2b LTR ERVK 1 327 0 3 644 273 53 0 0 chr1 7809794 7809832 -189385600 + IAPEz-int LTR ERVK 3 40 -1947 3 644 4315 99 9 33 chr1 7809832 7810493 -189384939 + IAPEz-int LTR ERVK 18 662 -5819 3 644 2107 68 0 0 chr1 7810493 7810757 -189384675 + IAPEz-int LTR ERVK 1359 1622 -4859 3 644 645 93 0 0 chr1 7810786 7810893 -189384539 + (TC)n Simple_repeat Simple_repeat 1 107 0 3 644 309 26 0 0 chr1 7810893 7810931 -189384501 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 644 183 80 0 0 chr1 7811128 7811153 -189384279 + (CATATA)n Simple_repeat Simple_repeat 6 30 0 3 644 1818 309 44 72 chr1 7811295 7812232 -189383200 - Lx9 LINE L1 -365 7279 6369 3 644 1792 267 97 18 chr1 7812803 7813491 -189381941 + Lx9 LINE L1 5136 5917 -1727 3 644 7534 181 36 8 chr1 7813527 7815105 -189380327 - Lx2 LINE L1 -7 6990 5385 3 644 3203 193 22 46 chr1 7815102 7815842 -189379590 + Lx2 LINE L1 4634 5362 -515 3 644 965 130 71 38 chr1 7815842 7816026 -189379406 + B2_Mm2 SINE B2 2 191 -4 3 644 3203 193 22 46 chr1 7816026 7816045 -189379387 + L1_Mur2 LINE L1 5363 5375 -502 3 644 255 320 47 28 chr1 7816911 7817017 -189378415 + B1F SINE Alu 6 113 -36 3 644 708 339 74 14 chr1 7818349 7818645 -189376787 + Lx9 LINE L1 6916 7229 -244 3 644 21 0 0 0 chr1 7818677 7818698 -189376734 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 431 293 66 70 chr1 7818746 7819032 -189376400 + RLTR11B LTR ERVK 1 285 -168 3 644 7386 121 76 5 chr1 7819077 7820285 -189375147 - L1_Mm LINE L1 -145 5738 4445 3 644 30101 107 13 3 chr1 7820307 7826373 -189369059 - L1_Mus1 LINE L1 0 6567 437 3 644 378 302 149 63 chr1 7826810 7827192 -189368240 + L1M4 LINE L1 3158 3572 -2574 3 644 288 426 7 21 chr1 7827233 7827377 -189368055 + B1F SINE Alu 1 142 -7 3 644 262 245 79 24 chr1 7827513 7827656 -189367776 + L1M4 LINE L1 3858 4010 -2136 3 644 2206 53 0 3 chr1 7827863 7828149 -189367283 - MTA_Mm LTR MaLR -111 285 1 3 644 6938 90 25 72 chr1 7828149 7829301 -189366131 - MTA_Mm-int LTR MaLR 0 1098 1 3 644 3087 54 13 3 chr1 7829301 7829693 -189365739 - MTA_Mm LTR MaLR 0 396 1 3 644 227 244 0 0 chr1 7829778 7829823 -189365609 + RSINE1 SINE B4 22 66 -99 3 644 563 337 24 50 chr1 7829960 7830257 -189365175 + B4 SINE B4 2 290 -2 3 644 239 289 62 0 chr1 7830563 7830660 -189364772 - MER3 DNA MER1_type -8 201 99 3 644 8920 10 0 0 chr1 7830662 7831964 -189363468 - L1Md_T LINE L1 0 6582 5281 3 644 263 242 120 10 chr1 7831965 7832065 -189363367 - MER3 DNA MER1_type -96 113 3 3 644 242 111 0 0 chr1 7833376 7833412 -189362020 - RLTR41 LTR ERV1 -410 36 1 3 644 232 269 0 82 chr1 7833443 7833516 -189361916 - RMER15 LTR ERVL -419 156 90 3 644 35379 47 2 3 chr1 7833520 7838903 -189356529 + L1Md_T LINE L1 114 5589 -297 3 644 8275 40 1 0 chr1 7838903 7839898 -189355534 + L1Md_T LINE L1 5590 6585 0 3 644 245 309 69 38 chr1 7840285 7840416 -189355016 - Tigger1 DNA MER2_type -2282 136 2 3 644 524 294 21 7 chr1 7840715 7840859 -189354573 - ORR1D2 LTR MaLR -135 235 90 3 644 415 328 19 63 chr1 7840906 7841111 -189354321 + Lx9 LINE L1 6379 6574 -1070 3 644 751 303 54 61 chr1 7841124 7841531 -189353901 + RLTR11A2 LTR ERVK 6 400 -41 3 644 337 286 0 23 chr1 7841571 7841657 -189353775 + Lx8 LINE L1 6442 6525 -948 3 644 26 0 0 0 chr1 7841797 7841823 -189353609 + AT_rich Low_complexity Low_complexity 1 26 0 3 644 22 0 0 0 chr1 7842306 7842328 -189353104 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 533 349 30 27 chr1 7842415 7842748 -189352684 - Lx9 LINE L1 -314 7330 6997 3 644 618 261 51 88 chr1 7843159 7843704 -189351728 - L1_Rod LINE L1 -2182 3665 3141 3 644 639 134 10 0 chr1 7844160 7844257 -189351175 + Lx4A LINE L1 6385 6482 -576 3 644 22 0 0 0 chr1 7844717 7844739 -189350693 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 31 44 0 0 chr1 7845446 7845491 -189349941 + AT_rich Low_complexity Low_complexity 1 45 0 3 644 33 43 0 0 chr1 7845598 7845645 -189349787 + AT_rich Low_complexity Low_complexity 1 47 0 3 644 2021 310 107 60 chr1 7846016 7847346 -189348086 + Lx6 LINE L1 5738 7431 -29 4 644 211 71 48 0 chr1 7847407 7847449 -189347983 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 4 644 252 0 0 0 chr1 7847449 7847477 -189347955 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4 644 13438 76 357 8 chr1 7847478 7851910 -189343522 - L1Md_F3 LINE L1 -21 6563 416 4 644 24 0 0 0 chr1 7854617 7854641 -189340791 + AT_rich Low_complexity Low_complexity 1 24 0 4 644 562 175 21 0 chr1 7854804 7854901 -189340531 + RMER16-int LTR ERVK 3881 3979 -1427 4 644 2107 281 51 40 chr1 7855141 7856025 -189339407 + RMER16-int LTR ERVK 3982 4875 -531 4 644 6017 66 0 1 chr1 7856035 7857069 -189338363 - L1Md_F2 LINE L1 -443 6139 5107 4 644 3128 90 25 5 chr1 7857069 7857514 -189337918 + L1Md_F2 LINE L1 6114 6567 -15 4 644 487 29 29 0 chr1 7857546 7857615 -189337817 + (CAA)n Simple_repeat Simple_repeat 2 72 0 4 644 2728 19 28 0 chr1 7857631 7857949 -189337483 - IAPLTR2b LTR ERVK 0 327 1 4 644 337 264 0 0 chr1 7857972 7858059 -189337373 + RMER16-int LTR ERVK 4902 4988 -418 4 644 398 301 8 16 chr1 7858290 7858415 -189337017 + IAP-d-int LTR ERVK 6387 6510 -32 4 644 345 187 25 51 chr1 7860730 7860809 -189334623 - RMER19B LTR ERVK -1 901 825 4 644 945 244 33 74 chr1 7860806 7861076 -189334356 - RMER19B LTR ERVK -314 588 330 4 644 203 207 33 33 chr1 7861138 7861198 -189334234 + T-rich Low_complexity Low_complexity 2 61 0 4 644 189 0 0 0 chr1 7861285 7861306 -189334126 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 4 644 2096 112 13 7 chr1 7861306 7861626 -189333806 - Lx3_Mus LINE L1 -23 6986 6647 4 644 501 262 35 30 chr1 7863550 7863719 -189331713 + RLTR42-int LTR ERVK 1230 1399 -4123 4 80 20087 143 22 16 chr1 7864170 7868220 -189327212 - L1Md_F LINE L1 -1342 4541 487 4 645 370 305 38 0 chr1 7869226 7869331 -189326101 + B3 SINE B2 103 211 -5 4 645 1259 266 123 14 chr1 7870534 7870872 -189324560 + MTC LTR MaLR 1 381 -40 4 645 626 95 11 0 chr1 7870872 7870967 -189324465 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 4 645 1259 266 123 14 chr1 7870967 7870986 -189324446 + MTC LTR MaLR 382 397 -24 4 645 606 271 23 0 chr1 7870968 7871101 -189324331 - B1_Mur1 SINE Alu -13 136 1 4 645 311 273 2 145 chr1 7871101 7871205 -189324227 - MT2B LTR ERVL -428 156 82 4 645 273 56 0 0 chr1 7871239 7871275 -189324157 + RLTR10B2 LTR ERVK 1 36 -256 4 645 1064 62 6 86 chr1 7871274 7871449 -189323983 + RLTR10B2 LTR ERVK 5 165 -200 4 645 7297 13 4 0 chr1 7871459 7872278 -189323154 - RLTR13B2 LTR ERVK 0 822 1 4 645 24513 115 53 18 chr1 7872290 7873866 -189321566 - ETnERV3-int LTR ERVK -1174 6070 4010 4 645 225 0 0 0 chr1 7873866 7873891 -189321541 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 645 24513 93 35 36 chr1 7873891 7877246 -189318186 - ETnERV3-int LTR ERVK -1799 4009 661 4 645 327 78 0 0 chr1 7877246 7877297 -189318135 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 645 24513 233 38 31 chr1 7877297 7878406 -189317026 - ETnERV3-int LTR ERVK -5568 1685 189 4 645 307 277 0 0 chr1 7878591 7878692 -189316740 - ETnERV3-int LTR ERVK -6874 379 279 4 645 1149 120 5 11 chr1 7878764 7878949 -189316483 - ETnERV3-int LTR ERVK -5622 186 3 4 645 7324 11 4 0 chr1 7878951 7879770 -189315662 - RLTR13B2 LTR ERVK 0 822 1 4 645 1134 49 0 0 chr1 7879773 7879915 -189315517 + RLTR10B LTR ERVK 151 292 0 4 645 1576 265 5 5 chr1 7879916 7880295 -189315137 + Lx9 LINE L1 6797 7175 -469 4 645 347 312 49 46 chr1 7880392 7881003 -189314429 - L1MC2 LINE L1 -1769 6016 5378 4 645 192 200 0 0 chr1 7881005 7881045 -189314387 + CT-rich Low_complexity Low_complexity 1 40 0 4 645 484 303 109 43 chr1 7881148 7881173 -189314259 - L1MC2 LINE L1 -907 5239 5218 4 645 342 0 0 0 chr1 7881173 7881211 -189314221 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 645 484 303 109 43 chr1 7881211 7881717 -189313715 - L1MC2 LINE L1 -929 5217 4673 4 645 490 309 28 50 chr1 7882133 7882416 -189313016 - RLTR15 LTR ERVK -9 350 74 4 645 854 52 9 0 chr1 7882416 7882532 -189312900 + (TTTTC)n Simple_repeat Simple_repeat 5 121 0 4 645 2820 77 2 13 chr1 7882532 7882925 -189312507 - L1Md_F2 LINE L1 -47 6535 6147 4 645 265 231 15 0 chr1 7882927 7882992 -189312440 - RLTR15 LTR ERVK -293 66 1 4 645 22 56 0 0 chr1 7883027 7883063 -189312369 + AT_rich Low_complexity Low_complexity 1 36 0 4 645 850 216 87 0 chr1 7883119 7883337 -189312095 - MYSERV6-int LTR ERVK -119 8840 8604 4 645 449 254 33 25 chr1 7883338 7883459 -189311973 - MTD LTR MaLR -295 124 3 4 645 498 339 94 14 chr1 7883701 7883976 -189311456 - MER2 DNA MER2_type -8 337 41 4 645 1281 233 102 143 chr1 7884437 7885074 -189310358 + RMER19C LTR ERVK 1 611 0 4 645 13979 134 26 13 chr1 7885319 7888346 -189307086 + Lx3_Mus LINE L1 3 3425 -2461 4 645 266 133 0 0 chr1 7888345 7888390 -189307042 - L1_Mur1 LINE L1 -2323 3563 3519 4 645 685 43 0 0 chr1 7888390 7888483 -189306949 + L1_Mur1 LINE L1 4541 4633 -1253 4 645 7431 118 63 42 chr1 7888482 7889929 -189305503 + Lx3_Mus LINE L1 5535 7009 0 4 645 506 274 79 92 chr1 7890350 7891278 -189304154 + L1MD LINE L1 2130 3045 -3101 4 645 266 216 267 33 chr1 7891354 7891474 -189303958 - Lx2B LINE L1 -3 6997 6850 4 645 268 189 14 0 chr1 7891583 7891657 -189303775 + L1MD LINE L1 3687 3761 -2385 4 645 196 386 45 15 chr1 7891686 7891820 -189303612 - MIR SINE MIR -113 149 12 4 645 3811 138 100 38 chr1 7892077 7892517 -189302915 + RMER17D2 LTR ERVK 1 467 -342 4 645 893 74 0 7 chr1 7892517 7892653 -189302779 + (TC)n Simple_repeat Simple_repeat 2 136 0 4 645 3811 138 100 38 chr1 7892653 7892798 -189302634 + RMER17D2 LTR ERVK 468 644 -165 4 645 219 36 0 0 chr1 7892798 7892826 -189302606 + (CACCC)n Simple_repeat Simple_repeat 1 28 0 4 645 3811 138 100 38 chr1 7892826 7893001 -189302431 + RMER17D2 LTR ERVK 645 809 0 4 645 266 356 41 31 chr1 7893046 7893240 -189302192 + MLT1J LTR MaLR 311 506 -6 4 645 209 137 58 19 chr1 7893947 7893999 -189301433 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 4 645 369 0 0 0 chr1 7894376 7894417 -189301015 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 645 815 331 19 8 chr1 7894419 7894675 -189300757 - B4A SINE B4 -23 269 11 4 645 462 313 134 0 chr1 7894690 7894907 -189300525 - L1MCa LINE L1 -4299 2209 1964 4 645 357 179 0 50 chr1 7894937 7895037 -189300395 - L1_Mur3 LINE L1 -2998 2882 2788 4 645 1140 277 25 5 chr1 7895138 7895505 -189299927 - ORR1D1 LTR MaLR 0 374 1 4 645 442 0 0 33 chr1 7895997 7896057 -189299375 + (TTA)n Simple_repeat Simple_repeat 2 59 0 4 645 207 0 0 0 chr1 7896103 7896126 -189299306 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 645 3988 146 6 3 chr1 7896126 7896772 -189298660 - Lx3B LINE L1 -8 6965 6318 4 645 1528 198 114 0 chr1 7896773 7897106 -189298326 + BGLII_B LTR ERVK 3 373 -68 4 645 1779 177 10 86 chr1 7897146 7897529 -189297903 + RLTR41 LTR ERV1 91 444 -2 4 645 357 308 23 15 chr1 7897529 7897659 -189297773 + RLTR31_Mur LTR ERVK 251 381 -172 4 645 4191 135 29 5 chr1 7897937 7898737 -189296695 - Lx3B LINE L1 -650 6323 5508 4 645 745 57 32 8 chr1 7899379 7899504 -189295928 + (TCTA)n Simple_repeat Simple_repeat 1 128 0 4 645 792 323 215 23 chr1 7899969 7900448 -189294984 - RMER15 LTR ERVL -4 571 1 4 645 1809 202 31 3 chr1 7900448 7900805 -189294627 + ORR1B2 LTR MaLR 1 367 0 4 645 1337 259 77 57 chr1 7900924 7901329 -189294103 - MTD LTR MaLR 0 419 7 4 645 330 67 0 0 chr1 7901767 7901812 -189293620 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 645 790 213 11 66 chr1 7901833 7902014 -189293418 - ORR1C2 LTR MaLR -213 171 1 4 645 1634 175 92 12 chr1 7902014 7902350 -189293082 - ORR1C2-int LTR MaLR 0 1509 1147 4 645 242 315 40 14 chr1 7902810 7902884 -189292548 - B3A SINE B2 -6 192 117 4 645 28 0 0 0 chr1 7905137 7905165 -189290267 + GC_rich Low_complexity Low_complexity 1 28 0 4 645 1136 255 59 39 chr1 7905914 7906301 -189289131 - RLTR22_Mur LTR ERVK -1039 809 415 4 645 330 240 57 85 chr1 7906319 7906460 -189288972 + RLTR23 LTR ERV1 294 430 0 4 645 1119 289 104 16 chr1 7907291 7907674 -189287758 + MTD LTR MaLR 1 417 -2 4 645 1411 73 23 64 chr1 7907975 7908239 -189287193 - MusHAL1 LINE L1 -1766 946 694 4 645 4922 123 107 26 chr1 7908237 7909281 -189286151 + Lx LINE L1 5502 6627 -27 4 645 27 0 0 0 chr1 7909282 7909309 -189286123 + AT_rich Low_complexity Low_complexity 1 27 0 4 645 1720 210 14 28 chr1 7909546 7909903 -189285529 - MTC LTR MaLR -63 358 7 4 645 2146 201 33 62 chr1 7910664 7911242 -189284190 - RLTR31_Mm LTR ERVK 0 561 1 4 645 384 305 101 47 chr1 7911285 7911506 -189283926 - L1MD3 LINE L1 -793 6992 6759 4 645 275 274 47 12 chr1 7911561 7911646 -189283786 + RLTR17 LTR ERVK 254 341 -351 4 645 476 258 0 61 chr1 7911634 7911766 -189283666 - RLTR17 LTR ERVK -463 229 106 4 645 1904 109 28 22 chr1 7911929 7912249 -189283183 - RLTRETN_Mm LTR ERVK 0 322 1 4 645 205 304 11 21 chr1 7912357 7912451 -189282981 + CT-rich Low_complexity Low_complexity 2 94 0 4 645 715 265 12 6 chr1 7912648 7912819 -189282613 - RLTR17 LTR ERVK -267 425 254 4 645 2345 193 28 15 chr1 7913673 7914141 -189281291 + Lx4A LINE L1 6584 7057 -1 4 645 230 310 99 0 chr1 7915552 7915623 -189279809 + ID4 SINE ID 3 80 -3 4 645 213 344 0 0 chr1 7915716 7915780 -189279652 + RSINE1 SINE B4 3 66 -99 4 645 294 259 11 138 chr1 7915933 7916027 -189279405 + RSINE1 SINE B4 84 165 0 4 645 797 195 380 10 chr1 7916067 7916373 -189279059 - MTC LTR MaLR 0 421 2 4 645 23 0 0 0 chr1 7916599 7916622 -189278810 + AT_rich Low_complexity Low_complexity 1 23 0 4 645 1020 98 0 47 chr1 7916928 7917066 -189278366 + B1_Mus1 SINE Alu 1 135 -13 4 645 306 0 0 0 chr1 7917066 7917100 -189278332 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 4 645 1020 98 0 47 chr1 7917100 7917111 -189278321 + B1_Mus1 SINE Alu 136 143 -5 4 645 246 281 72 51 chr1 7917115 7917310 -189278122 + L1M2 LINE L1 4643 4841 -1299 4 645 397 304 89 6 chr1 7917430 7917487 -189277945 + L1M2 LINE L1 4921 4982 -1161 4 645 513 32 0 0 chr1 7917487 7917550 -189277882 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 645 397 304 89 6 chr1 7917550 7917661 -189277771 + L1M2 LINE L1 4983 5102 -1041 4 645 2396 121 32 36 chr1 7917665 7918076 -189277356 + L1_Mus4 LINE L1 6222 6630 -6 4 645 523 252 47 16 chr1 7918483 7918612 -189276820 - ETnERV2-int LTR ERVK -204 7202 7070 4 645 294 237 0 0 chr1 7918842 7918924 -189276508 + L1M2 LINE L1 5366 5481 -819 4 645 6308 114 15 25 chr1 7918919 7920910 -189274522 + L1Md_F LINE L1 208 2181 -3702 4 645 31326 52 13 1 chr1 7920910 7925133 -189270299 + L1Md_F2 LINE L1 1313 5585 -298 4 645 7055 90 8 2 chr1 7925134 7926114 -189269318 + L1Md_F2 LINE L1 5587 6572 -10 4 645 204 40 0 0 chr1 7926150 7926175 -189269257 + (A)n Simple_repeat Simple_repeat 1 25 0 4 645 1022 58 26 0 chr1 7926239 7926394 -189269038 + (TCTA)n Simple_repeat Simple_repeat 2 160 0 4 645 2566 108 66 0 chr1 7926460 7926867 -189268565 + RLTR44B LTR ERVK 1 434 -15 4 645 473 224 0 8 chr1 7927050 7927176 -189268256 + (TA)n Simple_repeat Simple_repeat 1 125 0 4 645 27 73 0 0 chr1 7927365 7927420 -189268012 + AT_rich Low_complexity Low_complexity 1 55 0 5 645 26 0 0 0 chr1 7927454 7927480 -189267952 + AT_rich Low_complexity Low_complexity 1 26 0 5 645 486 0 0 0 chr1 7927594 7927648 -189267784 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 645 2305 207 34 15 chr1 7928391 7928981 -189266451 + RLTR26 LTR ERVK 1 642 0 5 645 330 156 0 0 chr1 7929354 7929418 -189266014 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 645 1877 279 94 71 chr1 7929476 7929805 -189265627 - Lx7 LINE L1 -392 7304 7000 5 645 477 0 0 0 chr1 7929805 7929858 -189265574 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 645 378 91 0 0 chr1 7929858 7929912 -189265520 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 645 1877 279 94 71 chr1 7929912 7930559 -189264873 - Lx7 LINE L1 -697 6999 6305 5 645 751 341 19 11 chr1 7930811 7931170 -189264262 + Lx8 LINE L1 6880 7241 -232 5 645 426 286 20 10 chr1 7931603 7931702 -189263730 + B4A SINE B4 15 114 -178 5 645 499 292 55 38 chr1 7931704 7932103 -189263329 - L1M2 LINE L1 -844 5299 4894 5 645 208 163 0 23 chr1 7932235 7932279 -189263153 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 645 319 323 36 42 chr1 7932431 7932599 -189262833 - L1M2 LINE L1 -1553 4590 4424 5 645 1893 102 31 22 chr1 7932747 7933066 -189262366 + RLTRETN_Mm LTR ERVK 1 322 0 5 645 17171 165 34 23 chr1 7933066 7939882 -189255550 + ETnERV2-int LTR ERVK 1 7203 -203 5 645 1840 109 31 25 chr1 7939882 7940202 -189255230 + RLTRETN_Mm LTR ERVK 1 322 0 5 645 330 307 84 9 chr1 7940203 7940449 -189254983 - L1M2 LINE L1 -1887 4253 3984 5 645 1132 95 0 0 chr1 7941907 7942054 -189253378 + B1_Mus1 SINE Alu 2 148 0 5 645 452 32 0 16 chr1 7942063 7942126 -189253306 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 5 645 2632 91 70 0 chr1 7942355 7942739 -189252693 + RLTR10A LTR ERVK 1 411 0 5 645 233 135 0 0 chr1 7942824 7942861 -189252571 - L1_Mur3 LINE L1 -3309 2571 2535 5 645 488 236 6 17 chr1 7942901 7943082 -189252350 + GA-rich Low_complexity Low_complexity 1 179 0 5 645 1343 238 80 58 chr1 7943083 7943650 -189251782 + Lx6 LINE L1 5744 6357 -693 5 645 1053 340 42 31 chr1 7943643 7944219 -189251213 + Lx6 LINE L1 6467 7414 -46 5 645 24 53 0 0 chr1 7944219 7944257 -189251175 + AT_rich Low_complexity Low_complexity 1 38 0 5 645 372 359 43 16 chr1 7944730 7944917 -189250515 - B4A SINE B4 -95 197 6 5 645 488 301 90 53 chr1 7946075 7946357 -189249075 + MTD LTR MaLR 1 278 -143 5 645 29999 109 8 19 chr1 7946361 7951716 -189243716 + L1Md_F LINE L1 487 5784 -99 5 645 3780 73 0 8 chr1 7951716 7952214 -189243218 + L1Md_F2 LINE L1 6084 6577 -5 5 645 29999 97 6 7 chr1 7952214 7952264 -189243168 + L1Md_F LINE L1 5785 5837 -46 5 645 2604 75 48 0 chr1 7952831 7953189 -189242243 - L1_Mus2 LINE L1 0 6566 6192 5 645 2316 128 6 17 chr1 7953189 7953917 -189241515 - L1VL4 LINE L1 -4293 1590 940 5 645 2563 55 3 9 chr1 7953917 7954246 -189241186 - L1Md_F2 LINE L1 -2 6580 6254 5 645 2026 169 10 148 chr1 7954246 7954463 -189240969 - L1VL4 LINE L1 -5673 943 725 5 645 356 256 38 30 chr1 7954471 7954604 -189240828 - L1VL4 LINE L1 -5813 803 670 5 645 509 269 51 20 chr1 7954647 7954844 -189240588 - L1VL2 LINE L1 -5981 354 152 5 645 354 340 0 10 chr1 7954984 7955085 -189240347 - PB1D10 SINE Alu -6 111 12 5 645 253 250 27 27 chr1 7955024 7955098 -189240334 - ID_B1 SINE B4 -72 152 79 5 645 28 0 0 0 chr1 7955107 7955135 -189240297 + AT_rich Low_complexity Low_complexity 1 28 0 5 645 216 0 0 0 chr1 7956799 7956823 -189238609 + (A)n Simple_repeat Simple_repeat 1 24 0 5 645 2104 32 0 0 chr1 7957292 7957570 -189237862 - L1_Mm LINE L1 -4041 1842 1565 5 645 2458 57 0 12 chr1 7957571 7957893 -189237539 + L1Md_F2 LINE L1 6265 6582 0 5 645 212 0 36 0 chr1 7957897 7957925 -189237507 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 645 222 37 0 0 chr1 7957943 7957970 -189237462 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 645 201 152 0 0 chr1 7958044 7958077 -189237355 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 645 288 307 43 93 chr1 7958613 7958753 -189236679 + ID_B1 SINE B4 82 214 -10 5 645 203 221 28 42 chr1 7958810 7958881 -189236551 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 5 645 4803 130 42 21 chr1 7958944 7959792 -189235640 + Lx3C LINE L1 6100 6965 -11 5 645 212 0 0 35 chr1 7959793 7959822 -189235610 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 645 381 162 0 0 chr1 7960044 7960124 -189235308 + Lx3_Mus LINE L1 6930 7009 0 5 645 385 161 11 11 chr1 7960892 7960980 -189234452 + CT-rich Low_complexity Low_complexity 1 88 0 5 645 2710 214 54 58 chr1 7961191 7962050 -189233382 - RLTR13A LTR ERVK 0 855 1 5 645 4820 156 80 3 chr1 7962340 7963230 -189232202 - RMER17B LTR ERVK 0 958 1 5 645 195 203 0 0 chr1 7963386 7963445 -189231987 + CT-rich Low_complexity Low_complexity 1 59 0 5 645 653 36 12 0 chr1 7963458 7963542 -189231890 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 645 484 300 59 13 chr1 7963542 7963694 -189231738 - B4A SINE B4 0 292 134 5 645 21 0 0 0 chr1 7963796 7963817 -189231615 + AT_rich Low_complexity Low_complexity 1 21 0 5 645 562 303 18 73 chr1 7963833 7963997 -189231435 - RSINE1 SINE B4 0 165 11 5 645 26 0 0 0 chr1 7964277 7964303 -189231129 + AT_rich Low_complexity Low_complexity 1 26 0 5 645 4852 271 54 50 chr1 7965018 7965326 -189230106 + Lx6 LINE L1 5450 5773 -1687 5 645 244 233 0 0 chr1 7965326 7965369 -189230063 - B1_Mus1 SINE Alu -100 48 6 5 645 4852 271 54 50 chr1 7965369 7966964 -189228468 + Lx6 LINE L1 5774 7456 -4 5 645 736 311 123 0 chr1 7967109 7967353 -189228079 + MTC LTR MaLR 19 292 -129 5 645 292 199 42 0 chr1 7967656 7967735 -189227697 + MTD LTR MaLR 219 334 -85 5 645 229 353 46 23 chr1 7967827 7967914 -189227518 - PB1D7 SINE Alu -29 91 3 5 645 1215 324 34 79 chr1 7968550 7969106 -189226326 - MTE-int LTR MaLR -219 1361 831 5 645 545 16 0 0 chr1 7969109 7969172 -189226260 + L1Md_A LINE L1 5523 5585 -298 5 645 8384 34 1 0 chr1 7969173 7970167 -189225265 + L1Md_A LINE L1 5587 6581 -1 5 645 570 329 47 19 chr1 7970167 7970378 -189225054 - MTE-int LTR MaLR -743 837 621 5 645 603 169 52 124 chr1 7970762 7970972 -189224460 - MTC-int LTR MaLR 0 1258 1064 5 645 303 122 0 0 chr1 7971671 7971720 -189223712 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 645 253 239 43 43 chr1 7971747 7971817 -189223615 - ID SINE ID -154 70 1 5 645 4880 149 2 0 chr1 7971979 7972782 -189222650 + L1VL4 LINE L1 29 833 -5469 5 645 19090 156 13 31 chr1 7972838 7976901 -189218531 + L1_Mus1 LINE L1 425 4250 -1636 5 645 315 0 0 0 chr1 7976901 7976936 -189218496 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 645 19090 128 7 2 chr1 7976936 7978217 -189217215 + L1_Mus1 LINE L1 4248 5533 -350 5 645 6837 112 16 6 chr1 7978217 7979230 -189216202 - RLTR13D5 LTR ERVK 0 1023 1 5 645 7249 70 9 0 chr1 7979231 7980260 -189215172 + L1_Mus1 LINE L1 5530 6567 0 5 645 14917 181 79 5 chr1 7980260 7983787 -189211645 + Lx LINE L1 1175 4971 -915 5 645 3013 18 0 0 chr1 7983787 7984124 -189211308 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 645 53744 19 11 4 chr1 7984124 7990555 -189204877 + IAPEz-int LTR ERVK 8 6481 0 5 645 3013 18 0 0 chr1 7990555 7990892 -189204540 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 645 5272 182 28 5 chr1 7990892 7992540 -189202892 + Lx LINE L1 4966 6641 -13 5 645 528 30 0 0 chr1 7992588 7992654 -189202778 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 645 661 282 33 5 chr1 7992665 7992875 -189202557 + B3 SINE B2 1 216 0 5 645 1512 22 0 0 chr1 7992968 7993148 -189202284 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 645 363 136 0 0 chr1 7993152 7993211 -189202221 + (TCC)n Simple_repeat Simple_repeat 1 59 0 5 645 408 250 22 93 chr1 7993214 7993439 -189201993 + Lx7 LINE L1 7488 7696 0 5 645 2211 161 86 16 chr1 7993448 7993878 -189201554 + RMER6B LTR ERVK 2 461 0 5 645 1838 106 28 31 chr1 7994099 7994422 -189201010 - RLTRETN_Mm LTR ERVK 0 322 1 5 645 186 43 0 0 chr1 7995093 7995116 -189200316 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 645 1117 84 0 0 chr1 7995185 7995327 -189200105 - B1_Mus2 SINE Alu -5 142 1 5 80 3746 146 18 2 chr1 7995334 7995939 -189199493 - Lx2 LINE L1 0 6997 6383 5 646 3146 60 25 0 chr1 7997345 7997746 -189197686 + RLTR10A LTR ERVK 1 411 0 5 646 999 194 40 40 chr1 7997774 7998157 -189197275 + RLTR11A2 LTR ERVK 47 527 0 5 646 1632 273 44 21 chr1 7999423 7999951 -189195481 - Lx7 LINE L1 -410 7286 6747 5 646 1422 181 61 4 chr1 8000000 8000277 -189195155 + RLTR40 LTR ERVK 51 343 -474 1 646 918 90 0 0 chr1 8000290 8000424 -189195008 + (GA)n Simple_repeat Simple_repeat 2 135 0 2 646 776 270 27 90 chr1 8000435 8000691 -189194741 + RLTR40 LTR ERVK 571 810 -7 1 646 295 242 16 0 chr1 8000696 8000758 -189194674 - Lx7 LINE L1 -945 6751 6689 3 646 22 56 0 0 chr1 8000811 8000847 -189194585 + AT_rich Low_complexity Low_complexity 1 36 0 4 646 836 174 0 46 chr1 8001320 8001471 -189193961 - B1_Mus1 SINE Alu -2 146 3 5 646 21 0 0 0 chr1 8001661 8001682 -189193750 + AT_rich Low_complexity Low_complexity 1 21 0 6 646 1281 278 55 31 chr1 8002060 8002264 -189193168 - Lx7 LINE L1 0 7696 7489 7 646 249 33 0 0 chr1 8002264 8002294 -189193138 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 8 646 1281 278 55 31 chr1 8002294 8002601 -189192831 - Lx7 LINE L1 -208 7488 7174 7 646 28 48 0 0 chr1 8002852 8002894 -189192538 + AT_rich Low_complexity Low_complexity 1 42 0 9 646 29 28 0 0 chr1 8002982 8003018 -189192414 + AT_rich Low_complexity Low_complexity 1 36 0 1 646 1831 261 89 4 chr1 8003032 8003516 -189191916 - Lx6 LINE L1 -5 7455 6931 1 646 1186 216 16 60 chr1 8003514 8003829 -189191603 - L1_Mur2 LINE L1 -2313 3564 3264 1 646 369 161 0 0 chr1 8003846 8003908 -189191524 - L1_Mur1 LINE L1 -1079 4807 4746 1 646 7612 134 15 13 chr1 8003908 8005144 -189190288 + Lx3A LINE L1 5744 6981 0 1 646 783 201 0 0 chr1 8005145 8005309 -189190123 + GA-rich Low_complexity Low_complexity 2 165 0 1 646 414 0 0 0 chr1 8005670 8005716 -189189716 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 646 1907 198 48 5 chr1 8005869 8006240 -189189192 + ORR1B1 LTR MaLR 8 394 0 1 646 765 112 8 0 chr1 8006369 8006494 -189188938 - L1_Mus2 LINE L1 -15 6551 6426 1 646 1100 152 100 38 chr1 8007875 8008180 -189187252 - IAPEY3_LTR LTR ERVK -2 388 1 1 646 241 207 82 35 chr1 8008649 8008734 -189186698 + RLTR13D2 LTR ERVK 855 943 -80 2 646 261 0 0 0 chr1 8010073 8010102 -189185330 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 646 183 184 0 0 chr1 8010102 8010140 -189185292 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 2 646 307 322 47 43 chr1 8010143 8010399 -189185033 + RMER12 LTR ERVK 770 1026 -296 2 646 6232 142 18 6 chr1 8010399 8011434 -189183998 - Lx LINE L1 -75 6579 5537 2 646 4400 106 24 39 chr1 8011434 8012197 -189183235 - RMER17A LTR ERVK 0 751 1 2 646 5098 182 6 47 chr1 8012197 8012662 -189182770 - Lx LINE L1 -347 5536 5108 2 646 1104 81 0 45 chr1 8012662 8012817 -189182615 - B1_Mus1 SINE Alu 0 148 1 2 646 5098 182 6 47 chr1 8012817 8013057 -189182375 - Lx LINE L1 -776 5107 4868 2 646 1028 262 73 44 chr1 8014202 8014585 -189180847 + MTD LTR MaLR 12 405 -14 2 646 309 221 83 10 chr1 8014766 8014862 -189180570 + MTEa LTR MaLR 277 379 0 2 646 1105 107 48 0 chr1 8014864 8015032 -189180400 - ORR1A4 LTR MaLR 0 329 154 2 646 244 316 41 6 chr1 8015168 8015337 -189180095 - L1M1 LINE L1 -394 5906 5732 3 646 1708 175 66 23 chr1 8015377 8015727 -189179705 - RLTR14 LTR ERV1 0 382 18 3 646 1144 306 29 10 chr1 8016140 8016502 -189178930 + MTE2b LTR MaLR 4 379 0 3 646 1455 143 178 7 chr1 8016681 8016962 -189178470 - ORR1A4 LTR MaLR 0 329 1 3 646 2459 26 2 246 chr1 8017061 8017577 -189177855 - RLTR10 LTR ERVK 0 390 1 3 646 8575 24 1 5 chr1 8017579 8018578 -189176854 - RLTR10-int LTR ERVK -3 1984 990 3 646 8237 28 7 11 chr1 8018657 8019647 -189175785 - RLTR10-int LTR ERVK -999 988 3 3 646 2441 28 2 247 chr1 8019649 8020164 -189175268 - RLTR10 LTR ERVK 0 390 2 3 646 2615 47 7 169 chr1 8020166 8020629 -189174803 - RLTR10 LTR ERVK -2 388 1 3 646 1192 268 42 7 chr1 8021151 8021459 -189173973 - Lx6 LINE L1 -1036 6424 6106 3 646 4146 245 71 19 chr1 8021446 8023926 -189171506 - Lx6 LINE L1 -555 7141 4982 3 646 5536 19 0 0 chr1 8023926 8024559 -189170873 - L1Md_A LINE L1 0 6582 5950 3 646 600 247 43 89 chr1 8024559 8024750 -189170682 - Lx6 LINE L1 -6606 1122 934 3 646 445 331 32 7 chr1 8024756 8024911 -189170521 - Lx6 LINE L1 -7072 656 498 3 646 388 245 0 45 chr1 8024980 8025091 -189170341 + PB1D9 SINE Alu 1 106 -14 3 646 3024 208 16 35 chr1 8025093 8025721 -189169711 - RMER20B LTR ERVK -2 625 10 3 646 21 0 0 0 chr1 8025852 8025873 -189169559 + AT_rich Low_complexity Low_complexity 1 21 0 4 646 3451 107 43 2 chr1 8026410 8026926 -189168506 - L1_Mus2 LINE L1 0 6566 6030 4 646 2201 238 22 22 chr1 8026987 8027521 -189167911 + RMER5 LTR ERV1 1 534 0 4 646 26 0 0 0 chr1 8027659 8027685 -189167747 + AT_rich Low_complexity Low_complexity 1 26 0 4 646 975 278 100 86 chr1 8027849 8028653 -189166779 + RMER12 LTR ERVK 9 815 -993 4 646 971 244 28 65 chr1 8028677 8028967 -189166465 + RMER12 LTR ERVK 939 1217 -105 4 646 1123 106 56 0 chr1 8029347 8029526 -189165906 + L1Md_F2 LINE L1 6394 6582 0 4 646 249 57 0 0 chr1 8029532 8029567 -189165865 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 646 411 229 109 45 chr1 8029598 8029708 -189165724 - Lx8 LINE L1 -326 7147 7031 4 646 1042 306 61 19 chr1 8029765 8030125 -189165307 - Lx8 LINE L1 -556 6917 6543 4 646 1326 115 18 9 chr1 8030497 8030716 -189164716 - Lx LINE L1 -1 6653 6433 4 646 3272 79 16 0 chr1 8030716 8031145 -189164287 - RLTR10C LTR ERVK 0 436 1 4 646 38491 53 2 15 chr1 8031145 8035955 -189159477 - MMERVK10C-int LTR ERVK 0 7581 2832 4 646 523 68 0 0 chr1 8035953 8036026 -189159406 - MMERVK10C-int LTR ERVK -4957 2624 2552 4 646 399 79 0 0 chr1 8036032 8036095 -189159337 - MMERVK10C-int LTR ERVK -5634 1947 1885 4 646 398 188 125 0 chr1 8036087 8036167 -189159265 - MMERVK10C-int LTR ERVK -5110 1027 938 4 646 1167 196 125 60 chr1 8036172 8036573 -189158859 - MMERVK10C-int LTR ERVK -4803 603 312 4 646 932 157 4 111 chr1 8036663 8036907 -189158525 - MMERVK10C-int LTR ERVK -6629 952 735 5 646 1454 128 87 90 chr1 8036912 8037256 -189158176 - MMERVK10C-int LTR ERVK -7238 343 1 5 646 3247 68 23 2 chr1 8037256 8037683 -189157749 - RLTR10C LTR ERVK 0 436 1 5 646 12997 163 49 14 chr1 8037684 8040921 -189154511 - Lx LINE L1 -217 6437 3077 5 646 489 17 0 0 chr1 8041831 8041889 -189153543 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 646 257 296 71 44 chr1 8042596 8042709 -189152723 + B4A SINE B4 155 270 -22 5 646 213 225 0 0 chr1 8042776 8042816 -189152616 + CT-rich Low_complexity Low_complexity 1 40 0 5 646 363 349 71 24 chr1 8042984 8043280 -189152152 + L1MC3 LINE L1 6363 6672 -1113 5 646 31 0 0 0 chr1 8043349 8043380 -189152052 + AT_rich Low_complexity Low_complexity 1 31 0 5 646 22 70 0 0 chr1 8043564 8043607 -189151825 + AT_rich Low_complexity Low_complexity 1 43 0 5 646 316 214 50 17 chr1 8044088 8044207 -189151225 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 5 646 237 268 125 23 chr1 8044291 8044379 -189151053 + MT2B LTR ERVL 154 250 -351 6 646 227 237 32 48 chr1 8044333 8044395 -189151037 + PB1 SINE Alu 63 123 -4 6 646 1711 175 9 60 chr1 8046213 8046548 -189148884 + ORR1A3 LTR MaLR 1 318 -8 6 646 224 54 0 51 chr1 8047229 8047268 -189148164 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 6 646 180 125 0 0 chr1 8047874 8047906 -189147526 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 6 646 454 280 45 0 chr1 8047913 8048045 -189147387 - Lx6 LINE L1 -33 7427 7290 6 646 841 309 82 71 chr1 8048059 8048625 -189146807 - Lx6 LINE L1 -337 7123 6217 6 646 23 54 0 0 chr1 8048763 8048800 -189146632 + AT_rich Low_complexity Low_complexity 1 37 0 6 646 2569 215 34 16 chr1 8048810 8049453 -189145979 - Lx4B LINE L1 -59 6941 6283 6 646 933 313 50 19 chr1 8050790 8051109 -189144323 - ORR1D2 LTR MaLR -26 344 16 6 646 180 0 0 0 chr1 8051438 8051458 -189143974 + (T)n Simple_repeat Simple_repeat 1 20 0 6 646 225 258 34 0 chr1 8051908 8051997 -189143435 + Charlie7 DNA MER1_type 66 157 -2455 7 646 31 0 0 0 chr1 8053301 8053332 -189142100 + AT_rich Low_complexity Low_complexity 1 31 0 7 646 441 0 0 0 chr1 8053391 8053440 -189141992 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 646 252 0 0 0 chr1 8053440 8053467 -189141965 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 646 565 287 131 58 chr1 8053613 8054065 -189141367 + RMER20B LTR ERVK 1 516 0 7 646 406 277 36 47 chr1 8054475 8054526 -189140906 + Lx7 LINE L1 7489 7537 -159 7 646 246 62 0 0 chr1 8054526 8054558 -189140874 + (CAT)n Simple_repeat Simple_repeat 2 33 0 7 646 406 277 36 47 chr1 8054558 8054699 -189140733 + Lx7 LINE L1 7538 7679 -17 7 646 1753 174 93 56 chr1 8055768 8056270 -189139162 + RMER16-int LTR ERVK 251 819 -4587 7 646 447 204 88 0 chr1 8056274 8056387 -189139045 + RMER16-int LTR ERVK 938 1060 -5077 7 646 652 217 5 102 chr1 8056400 8056621 -189138811 + ETnERV2-int LTR ERVK 2454 2753 -4653 7 646 3492 196 85 108 chr1 8056651 8057965 -189137467 + RLTR45-int LTR ERVK 4296 5579 -1665 7 646 2987 53 0 0 chr1 8057965 8058322 -189137110 + IAPEY2_LTR LTR ERVK 1 357 0 8 646 745 139 50 50 chr1 8058322 8058481 -189136951 + IAPLTR4_I LTR ERVK 22 180 -1290 8 646 8916 130 22 37 chr1 8058480 8059962 -189135470 + IAPEY3-int LTR ERVK 524 1982 -5698 8 646 3475 76 9 0 chr1 8059939 8060387 -189135045 + IAPEY3-int LTR ERVK 2238 2689 -4991 8 646 479 51 0 0 chr1 8060380 8060439 -189134993 + IAPEY3-int LTR ERVK 4852 4910 -2770 8 646 5363 83 56 0 chr1 8060439 8061172 -189134260 + IAPEY3-int LTR ERVK 6907 7680 0 8 646 2989 50 0 0 chr1 8061172 8061529 -189133903 + IAPEY2_LTR LTR ERVK 1 357 0 8 646 2511 167 102 13 chr1 8061529 8062080 -189133352 + ETnERV2-int LTR ERVK 4789 5388 -420 8 646 855 325 27 9 chr1 8062103 8062441 -189132991 + RNERVK23-int LTR ERVK 7506 7849 -368 8 646 4096 175 24 9 chr1 8062456 8063153 -189132279 + ETnERV2-int LTR ERVK 6495 7202 -204 8 646 1381 342 12 46 chr1 8063685 8064268 -189131164 + Lx8 LINE L1 6127 6689 -784 8 646 261 197 0 0 chr1 8064314 8064380 -189131052 + (TTA)n Simple_repeat Simple_repeat 2 67 0 8 646 4184 179 122 16 chr1 8064631 8065690 -189129742 - Lx5 LINE L1 -325 6725 5517 8 646 547 301 7 0 chr1 8065697 8065833 -189129599 + Lx5 LINE L1 6696 6832 -218 8 646 423 0 0 0 chr1 8065833 8065880 -189129552 + (T)n Simple_repeat Simple_repeat 1 47 0 8 646 4472 189 45 6 chr1 8065992 8066971 -189128461 + L1_Mur2 LINE L1 3512 4528 -1349 9 646 306 224 13 0 chr1 8066977 8067053 -189128379 + L1_Mur2 LINE L1 4989 5065 -812 9 646 252 307 82 25 chr1 8067054 8067298 -189128134 - MER33 DNA MER1_type -33 291 34 9 646 2025 237 31 87 chr1 8068508 8069111 -189126321 - RMER19C LTR ERVK -38 699 1 9 646 3956 259 178 22 chr1 8069171 8070734 -189124698 - Lx6 LINE L1 -26 7434 5660 9 646 3509 197 56 13 chr1 8070738 8071577 -189123855 - Lx6 LINE L1 -910 4970 4096 9 646 2420 300 84 55 chr1 8071596 8072818 -189122614 - Lx6 LINE L1 -4522 1358 129 9 646 2558 65 3 0 chr1 8074154 8074491 -189120941 + ORR1A0 LTR MaLR 1 338 -8 9 646 1007 151 63 16 chr1 8074565 8074754 -189120678 - URR1A DNA MER1_type 0 226 29 9 646 1717 205 16 32 chr1 8074759 8075132 -189120300 + ORR1B2 LTR MaLR 1 367 0 9 646 245 271 23 12 chr1 8075879 8075965 -189119467 - L1M4 LINE L1 -1188 4958 4872 9 646 3224 46 5 0 chr1 8076276 8076670 -189118762 - MTA_Mm LTR MaLR 0 396 1 9 646 22 0 0 0 chr1 8076789 8076811 -189118621 + AT_rich Low_complexity Low_complexity 1 22 0 9 646 5951 58 13 5 chr1 8077039 8077800 -189117632 + L1Md_F2 LINE L1 5804 6570 -12 1 646 2794 216 27 37 chr1 8077998 8078462 -189116970 + Lx5 LINE L1 6453 6927 -123 1 646 1920 148 3 10 chr1 8078462 8078775 -189116657 - RLTR10E LTR ERVK 0 311 1 1 646 2794 216 27 37 chr1 8078775 8078906 -189116526 + Lx5 LINE L1 6928 7042 -8 1 646 3340 178 37 16 chr1 8079547 8080176 -189115256 - RLTR26 LTR ERVK 0 642 1 1 646 284 336 50 21 chr1 8080522 8080662 -189114770 - MLT1A1 LTR MaLR -2 406 263 1 646 955 61 105 8 chr1 8080818 8080951 -189114481 + B1_Mm SINE Alu 2 147 0 1 646 587 165 17 9 chr1 8081016 8081132 -189114300 + PB1D10 SINE Alu 1 117 0 1 646 213 200 0 0 chr1 8081201 8081241 -189114191 + (CATA)n Simple_repeat Simple_repeat 1 40 0 1 646 483 63 0 0 chr1 8081241 8081304 -189114128 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 646 280 323 50 0 chr1 8081497 8081616 -189113816 - ID4 SINE ID -18 134 10 1 646 33 43 0 0 chr1 8082048 8082095 -189113337 + AT_rich Low_complexity Low_complexity 1 47 0 1 646 439 284 62 21 chr1 8082128 8082445 -189112987 + L1M2 LINE L1 5307 5634 -550 1 646 268 234 168 18 chr1 8082700 8082813 -189112619 - RLTR25B LTR ERVK 0 1028 899 1 646 345 164 123 213 chr1 8082797 8082952 -189112480 - RLTR25B LTR ERVK -256 772 632 1 646 1200 111 0 0 chr1 8083002 8083182 -189112250 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 646 189 107 0 0 chr1 8083182 8083210 -189112222 + (TCC)n Simple_repeat Simple_repeat 1 28 0 1 646 1329 73 0 0 chr1 8083210 8083388 -189112044 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1 646 22 56 0 0 chr1 8083496 8083532 -189111900 + AT_rich Low_complexity Low_complexity 1 36 0 1 646 1827 180 5 91 chr1 8083948 8084357 -189111075 - RLTR25B LTR ERVK -582 446 73 1 646 4264 133 17 86 chr1 8084352 8085177 -189110255 + RLTR13D6 LTR ERVK 135 902 0 1 646 495 0 0 0 chr1 8085969 8086024 -189109408 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 646 2561 115 9 64 chr1 8086242 8086677 -189108755 + RLTR10A LTR ERVK 1 411 0 1 646 2170 134 40 30 chr1 8087158 8087557 -189107875 + RLTR9D LTR ERVK 1 403 0 1 646 493 67 22 22 chr1 8087662 8087753 -189107679 + (TAAAA)n Simple_repeat Simple_repeat 5 95 0 1 646 3404 263 80 48 chr1 8087974 8088150 -189107282 - Lx9 LINE L1 -5 7639 7426 1 646 207 0 0 0 chr1 8088150 8088173 -189107259 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 646 3404 263 80 48 chr1 8088173 8088188 -189107244 - Lx9 LINE L1 -219 7425 7425 1 646 992 117 0 0 chr1 8088188 8088325 -189107107 - B1_Mus2 SINE Alu -9 138 2 1 646 3404 263 80 48 chr1 8088325 8089237 -189106195 - Lx9 LINE L1 -219 7425 6479 1 646 270 0 0 0 chr1 8089237 8089267 -189106165 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 646 3404 263 80 48 chr1 8089267 8089467 -189105965 - Lx9 LINE L1 -1166 6478 6293 1 646 7365 240 115 102 chr1 8089676 8090293 -189105139 - Lx9 LINE L1 -167 5680 5081 1 646 1035 195 88 204 chr1 8090293 8090725 -189104707 - ORR1C2 LTR MaLR 0 384 3 1 646 7365 240 115 102 chr1 8090725 8092619 -189102813 - Lx9 LINE L1 -767 5080 3066 1 646 672 221 7 7 chr1 8092619 8092760 -189102672 - B1_Mus2 SINE Alu 0 147 7 1 646 7365 240 115 102 chr1 8092760 8094170 -189101262 - Lx9 LINE L1 -767 3065 1564 1 646 11585 250 19 31 chr1 8094626 8099119 -189096313 - MuRRS-int LTR ERV1 -1992 5786 1312 1 646 1232 297 20 113 chr1 8099114 8099707 -189095725 - MuRRS-int LTR ERV1 -4489 574 37 1 646 3168 51 2 10 chr1 8099874 8100273 -189095159 - MTA_Mm LTR MaLR 0 396 1 1 646 318 223 97 0 chr1 8101359 8101462 -189093970 - Lx9 LINE L1 -193 7451 7339 1 646 315 0 0 0 chr1 8101469 8101504 -189093928 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 646 3114 233 54 3 chr1 8101511 8102247 -189093185 - Lx9 LINE L1 -353 7291 6518 1 646 22 0 0 0 chr1 8102467 8102489 -189092943 + AT_rich Low_complexity Low_complexity 1 22 0 1 646 21 0 0 0 chr1 8102925 8102946 -189092486 + AT_rich Low_complexity Low_complexity 1 21 0 1 646 24 32 0 0 chr1 8103174 8103205 -189092227 + AT_rich Low_complexity Low_complexity 1 31 0 1 646 507 353 64 67 chr1 8103333 8103631 -189091801 - MTD LTR MaLR -75 344 48 1 646 315 0 0 0 chr1 8103734 8103769 -189091663 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 646 26 30 0 0 chr1 8104770 8104803 -189090629 + AT_rich Low_complexity Low_complexity 1 33 0 1 646 249 333 14 0 chr1 8105131 8105203 -189090229 + ID4 SINE ID 10 82 -1 1 646 12531 148 106 11 chr1 8106925 8111914 -189083518 - L1_Mus2 LINE L1 -2 6564 525 1 646 397 283 0 10 chr1 8112426 8112526 -189082906 + ID_B1 SINE B4 95 193 -31 1 646 528 16 0 0 chr1 8112554 8112615 -189082817 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 646 2700 37 3 12 chr1 8112615 8112944 -189082488 + IAPLTR3 LTR ERVK 1 326 0 1 646 55942 26 6 5 chr1 8112944 8113072 -189082360 + IAPLTR3-int LTR ERVK 1 129 -6692 1 646 1355 95 11 0 chr1 8113072 8113261 -189082171 - B2_Mm1t SINE B2 -2 191 1 1 646 55942 26 6 5 chr1 8113261 8119923 -189075509 + IAPLTR3-int LTR ERVK 130 6801 -20 1 646 2737 34 3 12 chr1 8119923 8120251 -189075181 + IAPLTR3 LTR ERVK 1 325 -1 1 646 369 0 0 0 chr1 8120251 8120292 -189075140 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 646 2221 153 13 100 chr1 8120459 8120930 -189074502 + RLTR23 LTR ERV1 1 430 0 1 646 21 36 0 0 chr1 8121622 8121650 -189073782 + AT_rich Low_complexity Low_complexity 1 28 0 1 646 2518 220 77 35 chr1 8121733 8122411 -189073021 - RLTR22_Mur LTR ERVK 0 1848 1143 1 646 357 351 63 52 chr1 8122413 8122665 -189072767 + L1M5 LINE L1 4875 5129 -1017 1 646 297 0 0 0 chr1 8122897 8122930 -189072502 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 646 1768 264 18 0 chr1 8122931 8123317 -189072115 + MTD LTR MaLR 1 393 -26 1 646 2724 140 4 2 chr1 8123944 8124410 -189071022 - RMER16-int LTR ERVK -2443 2963 2497 1 646 4021 173 59 74 chr1 8124410 8125382 -189070050 + RMER17B LTR ERVK 1 957 -1 1 646 3788 139 87 45 chr1 8125382 8126175 -189069257 - RMER16-int LTR ERVK -2907 2499 1674 1 646 507 237 9 169 chr1 8126185 8126433 -189068999 - RMER16-int LTR ERVK -3140 2668 2362 1 80 576 275 23 35 chr1 8126439 8126690 -189068742 - RMER16-int LTR ERVK -5075 2331 2176 1 647 1166 123 18 49 chr1 8126859 8126884 -189068548 - RMER16-int LTR ERVK -3838 1568 1544 1 647 558 0 0 0 chr1 8126884 8126946 -189068486 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 1 647 1135 65 0 0 chr1 8126946 8127085 -189068347 - B1_Mus1 SINE Alu -9 139 1 1 647 1166 123 18 49 chr1 8127085 8127281 -189068151 - RMER16-int LTR ERVK -3863 1543 1354 1 647 1362 251 83 14 chr1 8127287 8127744 -189067688 + MTA_Mm-int LTR MaLR 848 1370 0 1 647 972 300 115 3 chr1 8127746 8128067 -189067365 + MTA_Mm LTR MaLR 3 359 -11 1 647 8789 47 9 0 chr1 8128068 8129156 -189066276 + MTA_Mm-int LTR MaLR 1 1098 0 1 647 3238 58 0 0 chr1 8129156 8129549 -189065883 + MTA_Mm LTR MaLR 1 393 -3 1 647 8417 45 0 1 chr1 8129549 8130626 -189064806 - L1_Mm LINE L1 -44 5839 4764 1 647 1826 26 4 0 chr1 8130616 8130845 -189064587 + L1Md_F2 LINE L1 5747 5976 -606 1 647 2059 263 118 3 chr1 8130868 8131502 -189063930 - RMER1B Other Other -5 1061 355 1 647 910 242 121 121 chr1 8131565 8131903 -189063529 - ORR1D1 LTR MaLR -35 339 2 1 647 1715 279 88 48 chr1 8131970 8132576 -189062856 + ORR1D2-int LTR MaLR 741 1370 0 1 647 434 329 66 47 chr1 8132576 8132939 -189062493 + ORR1D2 LTR MaLR 1 370 0 1 647 243 78 39 19 chr1 8133014 8133066 -189062366 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 647 24 53 0 0 chr1 8133219 8133257 -189062175 + AT_rich Low_complexity Low_complexity 1 38 0 1 647 593 406 77 16 chr1 8133406 8133772 -189061660 + MER45B DNA Tip100 1 388 -652 1 647 29 28 0 0 chr1 8134594 8134630 -189060802 + AT_rich Low_complexity Low_complexity 1 36 0 1 647 3601 271 67 28 chr1 8134853 8136125 -189059307 - MERVK26-int LTR ERVK -2336 4583 3237 1 647 441 349 62 15 chr1 8136125 8136320 -189059112 - MER45B DNA Tip100 -797 243 40 1 647 479 321 64 89 chr1 8136980 8137384 -189058048 + RMER13A LTR ERVK 1 394 -466 1 647 26 50 0 0 chr1 8138396 8138436 -189056996 + AT_rich Low_complexity Low_complexity 1 40 0 1 647 23 0 0 0 chr1 8138647 8138670 -189056762 + AT_rich Low_complexity Low_complexity 1 23 0 1 647 343 167 30 0 chr1 8138675 8138741 -189056691 + ORR1C2 LTR MaLR 1 68 -316 1 647 423 0 0 0 chr1 8139895 8139942 -189055490 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 647 1113 84 0 0 chr1 8140594 8140737 -189054695 + B1_Mus1 SINE Alu 1 143 -5 1 647 615 48 0 0 chr1 8140737 8140820 -189054612 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 1 647 4372 128 24 7 chr1 8141444 8142181 -189053251 - RMER16-int LTR ERVK -1827 3579 2830 1 647 420 99 0 0 chr1 8142181 8142252 -189053180 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 1 647 4570 75 5 26 chr1 8142261 8142902 -189052530 - L1Md_F2 LINE L1 -14 6568 5942 1 647 2468 59 0 0 chr1 8142925 8143232 -189052200 - L1_Mus1 LINE L1 -1 6566 6260 1 647 776 193 18 12 chr1 8143232 8143400 -189052032 - RMER16-int LTR ERVK -2588 2818 2650 1 647 9273 114 47 35 chr1 8143393 8145049 -189050383 + RMER16-int LTR ERVK 3575 5249 -157 1 647 834 85 8 8 chr1 8145049 8145168 -189050264 + RMER16 LTR ERVK 331 449 -84 1 647 2111 154 16 28 chr1 8145366 8145754 -189049678 - Lx2 LINE L1 -126 6871 6489 1 647 310 127 0 0 chr1 8145755 8145810 -189049622 + Lx2 LINE L1 6940 6994 -3 1 647 1374 171 14 22 chr1 8146004 8146279 -189049153 - RMER17D2 LTR ERVK 0 809 537 1 647 2945 18 3 0 chr1 8146286 8146622 -189048810 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 647 52873 19 21 4 chr1 8146622 8152990 -189042442 + IAPEz-int LTR ERVK 8 6481 0 1 647 2951 18 3 0 chr1 8152990 8153326 -189042106 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 647 3571 127 32 13 chr1 8153326 8153946 -189041486 - RMER17A2 LTR ERVK -274 632 1 1 647 655 281 24 19 chr1 8154036 8154246 -189041186 - B3 SINE B2 -5 211 1 1 647 1676 173 109 35 chr1 8155671 8156018 -189039414 + RLTR30 LTR ERV1 7 379 0 1 647 24 32 0 0 chr1 8157084 8157115 -189038317 + AT_rich Low_complexity Low_complexity 1 31 0 1 647 238 318 15 0 chr1 8157236 8157302 -189038130 + Lx8 LINE L1 7187 7253 -220 1 647 21 0 0 0 chr1 8157723 8157744 -189037688 + AT_rich Low_complexity Low_complexity 1 21 0 1 647 255 347 38 43 chr1 8157871 8158055 -189037377 + Charlie1a DNA MER1_type 924 1106 -349 1 647 267 69 33 33 chr1 8158570 8158630 -189036802 + (TATAA)n Simple_repeat Simple_repeat 3 62 0 1 647 26 30 0 0 chr1 8158630 8158663 -189036769 + AT_rich Low_complexity Low_complexity 1 33 0 1 647 23 78 0 0 chr1 8158721 8158772 -189036660 + AT_rich Low_complexity Low_complexity 1 51 0 1 647 1473 260 22 0 chr1 8158815 8159181 -189036251 + ORR1D1 LTR MaLR 1 374 0 1 647 439 237 47 0 chr1 8159358 8159527 -189035905 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 647 623 353 41 28 chr1 8159533 8159824 -189035608 - RMER15 LTR ERVL -17 558 264 1 647 270 302 50 40 chr1 8159830 8159930 -189035502 - RMER15 LTR ERVL -456 119 19 1 647 228 286 44 67 chr1 8159903 8159993 -189035439 - RMER15 LTR ERVL -482 93 6 1 647 264 59 0 0 chr1 8160008 8160042 -189035390 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 647 441 312 98 0 chr1 8160155 8160267 -189035165 - B4A SINE B4 -166 126 4 1 647 23 33 0 0 chr1 8160321 8160351 -189035081 + AT_rich Low_complexity Low_complexity 1 30 0 1 647 2414 69 72 0 chr1 8160580 8160899 -189034533 + ORR1A1 LTR MaLR 5 346 0 2 647 632 270 128 4 chr1 8161032 8161274 -189034158 + Lx8 LINE L1 7201 7472 -1 2 647 575 14 14 0 chr1 8161950 8162022 -189033410 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 647 332 167 14 0 chr1 8162995 8163067 -189032365 + T-rich Low_complexity Low_complexity 2 74 0 2 647 254 125 0 20 chr1 8164889 8164938 -189030494 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 647 32 43 0 0 chr1 8165042 8165088 -189030344 + AT_rich Low_complexity Low_complexity 1 46 0 2 647 248 260 20 0 chr1 8165362 8165412 -189030020 + B4 SINE B4 6 56 -236 2 647 257 286 16 0 chr1 8165463 8165526 -189029906 + B4 SINE B4 154 217 -75 2 647 719 130 8 0 chr1 8165526 8165649 -189029783 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 647 1363 307 33 10 chr1 8165703 8166222 -189029210 + Lx8 LINE L1 6237 6767 -706 2 647 1740 314 44 33 chr1 8166335 8167023 -189028409 + Lx8 LINE L1 6779 7473 0 2 647 312 242 23 0 chr1 8167024 8167156 -189028276 + GA-rich Low_complexity Low_complexity 2 136 0 2 647 562 308 73 50 chr1 8167253 8167554 -189027878 + MER2 DNA MER2_type 6 313 -32 2 647 276 299 101 16 chr1 8168218 8168347 -189027085 - RMER4B LTR ERVK -97 488 349 2 647 2926 25 3 27 chr1 8168426 8168761 -189026671 - IAPLTR2b LTR ERVK 0 327 1 2 647 6010 55 7 7 chr1 8168761 8169539 -189025893 - RLTR10-int LTR ERVK -269 1718 990 2 647 666 326 28 28 chr1 8169621 8170044 -189025388 - RLTR10-int LTR ERVK -5987 1594 1172 2 647 6079 30 0 0 chr1 8170069 8170742 -189024690 - RLTR10-int LTR ERVK -995 992 302 2 647 881 339 34 22 chr1 8170742 8170760 -189024672 - RodERV21-int LTR ERV1 -211 4780 4763 2 647 2432 65 145 12 chr1 8170760 8171104 -189024328 - RLTR10 LTR ERVK 0 390 1 2 647 881 339 34 22 chr1 8171104 8171492 -189023940 - RodERV21-int LTR ERV1 -229 4762 4370 2 647 1277 58 105 0 chr1 8171498 8171669 -189023763 - L1_Mus3 LINE L1 -795 5843 5655 2 647 5519 120 11 3 chr1 8171669 8172452 -189022980 + L1_Mus3 LINE L1 5843 6632 -6 2 647 1432 364 35 34 chr1 8173186 8174101 -189021331 - RodERV21-int LTR ERV1 -728 4263 3348 2 647 2073 284 26 18 chr1 8174163 8174730 -189020702 - RodERV21-int LTR ERV1 -3168 1823 1252 2 647 228 35 0 0 chr1 8176085 8176114 -189019318 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 647 29 28 0 0 chr1 8176696 8176732 -189018700 + AT_rich Low_complexity Low_complexity 1 36 0 2 647 29 0 0 0 chr1 8176763 8176792 -189018640 + AT_rich Low_complexity Low_complexity 1 29 0 2 647 515 189 19 0 chr1 8177339 8177445 -189017987 - RMER1B Other Other 0 1066 959 2 647 4148 218 38 51 chr1 8177445 8178360 -189017072 - RMER13B LTR ERVK 0 908 6 2 647 2141 281 26 78 chr1 8178374 8179218 -189016214 - RMER1B Other Other -105 961 162 2 647 830 295 88 8 chr1 8179232 8179495 -189015937 - RMER1B Other Other -705 361 78 2 647 375 327 103 16 chr1 8179813 8180065 -189015367 + L1MCb LINE L1 619 892 -5153 2 647 4026 30 5 0 chr1 8180098 8180532 -189014900 + RLTR10C LTR ERVK 1 436 0 2 647 2715 90 53 3 chr1 8180532 8180912 -189014520 + MMERVK10C-int LTR ERVK 1 399 -7182 2 647 43238 36 0 1 chr1 8180910 8185854 -189009578 + MMERVK10C-int LTR ERVK 870 5810 -1771 2 647 8206 36 0 1 chr1 8185840 8186777 -189008655 + MMERVK10C-int LTR ERVK 6646 7581 0 2 647 4026 30 5 0 chr1 8186777 8187211 -189008221 + RLTR10C LTR ERVK 1 436 0 2 647 268 258 34 0 chr1 8187248 8187337 -189008095 + L1MCb LINE L1 976 1067 -4978 2 647 565 244 22 22 chr1 8187340 8187474 -189007958 + B1F SINE Alu 10 143 -6 2 647 26 30 0 0 chr1 8187529 8187562 -189007870 + AT_rich Low_complexity Low_complexity 1 33 0 2 647 2568 188 52 60 chr1 8187650 8189180 -189006252 + L1_Mus2 LINE L1 220 1559 -2355 2 647 5210 109 55 5 chr1 8189156 8190663 -189004769 + L1_Mus3 LINE L1 5057 6634 -4 2 647 8201 116 8 2 chr1 8190645 8193513 -189001919 + L1_Mus2 LINE L1 1537 6566 0 2 647 952 153 11 59 chr1 8193733 8193920 -189001512 + URR1A DNA MER1_type 47 224 -2 2 647 1435 257 20 56 chr1 8193948 8194230 -189001202 + RMER15 LTR ERVL 33 275 -300 2 647 243 0 0 0 chr1 8194230 8194257 -189001175 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 647 1435 291 14 19 chr1 8194257 8194550 -189000882 + RMER15 LTR ERVL 276 571 -4 2 647 6507 160 64 24 chr1 8194608 8195744 -188999688 + Lx4B LINE L1 5876 7057 -1 2 647 23 0 0 0 chr1 8195802 8195825 -188999607 + AT_rich Low_complexity Low_complexity 1 23 0 2 647 465 308 77 67 chr1 8196266 8196593 -188998839 + RLTR17 LTR ERVK 125 454 -238 2 647 225 0 0 0 chr1 8196875 8196900 -188998532 + (A)n Simple_repeat Simple_repeat 1 25 0 2 647 2541 143 5 67 chr1 8196955 8197389 -188998043 + MTB_Mm LTR MaLR 1 407 0 2 647 909 252 33 19 chr1 8197687 8197897 -188997535 - B3 SINE B2 0 216 4 2 647 215 286 16 0 chr1 8198319 8198382 -188997050 + CT-rich Low_complexity Low_complexity 3 66 0 2 647 15763 106 9 9 chr1 8199577 8202541 -188992891 + L1Md_F2 LINE L1 416 3375 -2508 2 647 41962 7 0 0 chr1 8202548 8209131 -188986301 - L1Md_A LINE L1 0 6582 1 2 647 16962 81 1 0 chr1 8209132 8211351 -188984081 + L1Md_F2 LINE L1 3367 5586 -297 2 647 8262 59 5 1 chr1 8211351 8212331 -188983101 + L1Md_F2 LINE L1 5587 6570 -12 2 647 186 133 0 0 chr1 8212345 8212375 -188983057 + (A)n Simple_repeat Simple_repeat 1 30 0 2 647 21 57 0 0 chr1 8212471 8212506 -188982926 + AT_rich Low_complexity Low_complexity 1 35 0 2 647 23 33 0 0 chr1 8212736 8212766 -188982666 + AT_rich Low_complexity Low_complexity 1 30 0 2 647 441 0 0 0 chr1 8213486 8213535 -188981897 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 647 1213 80 0 6 chr1 8213905 8214068 -188981364 + L1_Mus1 LINE L1 6406 6567 0 2 647 6235 126 43 7 chr1 8214518 8215478 -188979954 - Lx3A LINE L1 0 6981 5988 2 647 853 95 16 0 chr1 8215481 8215607 -188979825 + MTB LTR MaLR 219 346 0 2 647 6233 147 7 92 chr1 8215611 8216807 -188978625 + MTB-int LTR MaLR 3 1096 -2 2 647 2661 106 63 18 chr1 8216809 8217192 -188978240 + MTB LTR MaLR 1 400 0 2 647 1348 293 20 39 chr1 8217245 8217801 -188977631 - Lx5 LINE L1 0 7460 6515 2 647 243 88 0 0 chr1 8218752 8218786 -188976646 + (T)n Simple_repeat Simple_repeat 1 34 0 2 647 1658 189 49 0 chr1 8219248 8219554 -188975878 + ORR1A4 LTR MaLR 1 321 -8 2 647 6594 102 39 49 chr1 8220190 8220804 -188974628 - L1_Mus3 LINE L1 -7 7001 5990 2 647 1154 97 0 0 chr1 8220804 8220949 -188974483 + B1_Mus2 SINE Alu 1 145 -2 2 647 6594 133 24 26 chr1 8220949 8221859 -188973573 - L1_Mus3 LINE L1 -649 5989 5115 2 647 9052 86 105 6 chr1 8221848 8224276 -188971156 - L1Md_F3 LINE L1 -2 6582 3865 2 647 2786 133 30 20 chr1 8224276 8224755 -188970677 + RMER17B LTR ERVK 1 452 -506 2 647 233 323 11 148 chr1 8224807 8224996 -188970436 - RMER4B LTR ERVK -398 187 25 2 647 258 279 43 14 chr1 8225022 8225091 -188970341 - ID4 SINE ID -2 81 11 2 647 244 72 50 44 chr1 8225139 8225233 -188970199 - L1P5 LINE L1 -475 5837 5753 2 647 25 0 0 0 chr1 8225358 8225383 -188970049 + AT_rich Low_complexity Low_complexity 1 25 0 2 647 204 40 0 0 chr1 8225619 8225644 -188969788 + (T)n Simple_repeat Simple_repeat 1 25 0 2 647 1083 69 0 14 chr1 8225644 8225791 -188969641 - B1_Mus2 SINE Alu 0 147 3 2 647 31321 50 3 4 chr1 8225874 8230744 -188964688 - L1Md_F3 LINE L1 0 6584 1721 2 647 1754 210 175 48 chr1 8230744 8231240 -188964192 + RMER17B LTR ERVK 400 958 0 2 647 9172 156 9 43 chr1 8231240 8233165 -188962267 - L1_Mm LINE L1 -2013 3870 2010 2 647 6683 23 1 13 chr1 8233158 8233999 -188961433 - L1_Mm LINE L1 -235 5648 4818 2 647 4462 45 2 0 chr1 8233999 8234537 -188960895 + L1Md_T LINE L1 6044 6582 0 2 647 265 70 0 0 chr1 8234537 8234580 -188960852 - L1VL4 LINE L1 -1891 2023 1981 2 647 2367 146 44 69 chr1 8234585 8235575 -188959857 - L1VL4 LINE L1 -4125 1752 745 2 647 394 208 0 0 chr1 8235703 8235775 -188959657 - B1F1 SINE Alu -1 148 77 2 647 872 274 23 4 chr1 8235858 8236114 -188959318 - Lx7 LINE L1 -697 6999 6739 2 647 445 327 0 7 chr1 8236267 8236418 -188959014 + Lx7 LINE L1 7107 7256 -440 2 647 575 39 26 0 chr1 8237031 8237108 -188958324 + (GAAAA)n Simple_repeat Simple_repeat 3 81 0 2 647 25 0 0 0 chr1 8237500 8237525 -188957907 + AT_rich Low_complexity Low_complexity 1 25 0 2 647 580 188 36 0 chr1 8238273 8238385 -188957047 + Lx7 LINE L1 6991 7106 -590 2 647 2639 110 27 2 chr1 8238588 8239034 -188956398 + MusHAL1 LINE L1 1635 2091 -621 2 647 30278 54 7 103 chr1 8239032 8243927 -188951505 + L1Md_T LINE L1 240 4990 -893 2 647 1864 131 254 31 chr1 8243927 8244375 -188951057 - RLTR6_Mm LTR ERV1 -70 584 37 2 647 30278 54 7 103 chr1 8244375 8244987 -188950445 + L1Md_T LINE L1 4991 5586 -297 2 647 8289 38 0 3 chr1 8244987 8245985 -188949447 + L1Md_T LINE L1 5587 6581 -1 2 647 839 149 6 0 chr1 8245991 8246152 -188949280 + MusHAL1 LINE L1 2064 2225 -487 2 647 5345 193 105 18 chr1 8246153 8247655 -188947777 + MERVL_2A-int LTR ERVL 1779 3410 -2351 2 647 5231 225 65 2 chr1 8247653 8248318 -188947114 + MERVL_2A-int LTR ERVL 4088 4800 -961 2 647 3091 64 21 0 chr1 8248318 8248706 -188946726 + MTA_Mm LTR MaLR 1 396 0 2 647 5231 215 59 2 chr1 8248706 8249443 -188945989 + MERVL_2A-int LTR ERVL 4801 5609 -152 2 647 286 217 59 24 chr1 8249443 8249528 -188945904 + ORR1A3-int LTR MaLR 552 639 -1324 2 647 289 148 19 0 chr1 8249528 8249582 -188945850 + MERVL_2A-int LTR ERVL 5706 5760 -1 2 647 1456 204 111 3 chr1 8250235 8250559 -188944873 - ORR1B2 LTR MaLR -8 359 1 2 647 419 189 0 13 chr1 8250560 8250635 -188944797 - ORR1B2-int LTR MaLR -1 1508 1435 2 647 422 341 65 41 chr1 8250899 8251262 -188944170 - RLTR16 LTR ERVK -271 421 1 2 647 683 220 19 6 chr1 8251262 8251412 -188944020 - ORR1B2-int LTR MaLR -67 1442 1291 2 647 2852 16 0 0 chr1 8251413 8251735 -188943697 - RLTRETN_Mm LTR ERVK 0 322 1 2 647 706 298 168 12 chr1 8251741 8252175 -188943257 - RMER20A LTR ERVK 0 516 1 2 647 5348 212 49 31 chr1 8252175 8253445 -188941987 - ORR1B2-int LTR MaLR -214 1295 3 2 647 1401 223 20 17 chr1 8253451 8253748 -188941684 - ORR1B2 LTR MaLR -8 359 62 2 647 504 0 0 0 chr1 8256329 8256385 -188939047 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 2 647 369 0 0 0 chr1 8256695 8256736 -188938696 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 647 321 327 114 35 chr1 8256744 8256916 -188938516 - L1MC1 LINE L1 -157 6187 5991 2 647 1864 191 28 15 chr1 8256916 8257305 -188938127 + ORR1B1 LTR MaLR 1 394 0 2 80 321 327 114 35 chr1 8257305 8257791 -188937641 - L1MC1 LINE L1 -352 5992 5477 2 648 227 298 130 38 chr1 8257848 8258239 -188937193 - L1MC1 LINE L1 -743 5403 4977 2 648 9377 133 12 1 chr1 8258239 8260621 -188934811 - L1_Mus3 LINE L1 -2 6636 4224 2 648 1964 90 127 0 chr1 8260622 8260922 -188934510 + ORR1A1 LTR MaLR 1 338 -8 2 648 12204 81 37 3 chr1 8260926 8262660 -188932772 + ORR1A1-int LTR MaLR 1 1792 0 2 648 1717 57 1 12 chr1 8262660 8262905 -188932527 + ORR1A1 LTR MaLR 1 222 -105 2 648 21 0 0 0 chr1 8263899 8263920 -188931512 + AT_rich Low_complexity Low_complexity 1 21 0 2 648 383 374 46 6 chr1 8265335 8265510 -188929922 - B3A SINE B2 -16 182 1 2 648 1665 142 120 31 chr1 8265590 8265916 -188929516 - ORR1B1 LTR MaLR 0 394 40 2 648 361 259 127 22 chr1 8266837 8266971 -188928461 - B1_Mur1 SINE Alu -1 148 1 2 648 5460 27 0 0 chr1 8267010 8267642 -188927790 - L1Md_A LINE L1 0 6582 5951 2 648 21 0 0 0 chr1 8267793 8267814 -188927618 + AT_rich Low_complexity Low_complexity 1 21 0 2 648 23 97 0 0 chr1 8268048 8268120 -188927312 + AT_rich Low_complexity Low_complexity 1 72 0 2 648 6643 117 26 5 chr1 8268339 8269699 -188925733 - Lx LINE L1 0 6654 5271 2 648 639 50 30 0 chr1 8269759 8269859 -188925573 + (TCTCC)n Simple_repeat Simple_repeat 3 105 0 2 648 1954 164 10 0 chr1 8269914 8270224 -188925208 + ORR1A3 LTR MaLR 1 313 -13 2 648 373 328 60 8 chr1 8270227 8270344 -188925088 - B1F1 SINE Alu -26 123 1 2 648 198 0 0 0 chr1 8270812 8270834 -188924598 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 648 487 281 97 48 chr1 8270892 8271120 -188924312 + MER82 DNA MER2_type 104 342 -311 3 648 296 294 84 32 chr1 8271179 8271274 -188924158 + B3A SINE B2 83 182 -16 3 648 410 282 33 72 chr1 8271282 8271435 -188923997 - RMER12 LTR ERVK 0 1322 1176 3 648 5238 26 0 0 chr1 8271437 8272334 -188923098 - L1Md_T LINE L1 -438 6144 5248 3 648 1363 45 6 0 chr1 8272334 8272513 -188922919 + L1Md_A LINE L1 6402 6581 -1 3 648 1298 260 133 22 chr1 8272833 8273357 -188922075 - RLTR22_Mur LTR ERVK -179 1669 819 3 648 2197 283 64 45 chr1 8273409 8274361 -188921071 - RLTR22_Mur LTR ERVK -878 970 1 3 648 201 74 0 0 chr1 8274940 8274967 -188920465 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 648 418 356 86 0 chr1 8275316 8275490 -188919942 + MLT1A0 LTR MaLR 160 348 -17 3 648 5147 172 20 16 chr1 8276982 8278288 -188917144 + Lx2B LINE L1 4778 6081 -916 3 648 3326 142 66 62 chr1 8278302 8278942 -188916490 - RLTR26 LTR ERVK 0 642 1 3 648 10249 121 30 2 chr1 8278946 8280427 -188915005 - MERVK26-int LTR ERVK -1 6918 5397 3 648 485 35 0 0 chr1 8280427 8280485 -188914947 + L1_Mus1 LINE L1 6423 6480 -87 3 648 3148 108 30 6 chr1 8280485 8280560 -188914872 + RLTR13D4 LTR ERVK 555 629 -404 3 648 594 0 0 0 chr1 8280560 8280626 -188914806 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 3 648 3148 108 30 6 chr1 8280626 8281018 -188914414 + RLTR13D4 LTR ERVK 630 1033 0 3 648 825 11 0 0 chr1 8281023 8281117 -188914315 + (TTC)n Simple_repeat Simple_repeat 2 95 0 3 648 4155 57 40 18 chr1 8281121 8281676 -188913756 - L1_Mus2 LINE L1 -9 6557 5991 3 648 28522 113 10 8 chr1 8281676 8285794 -188909638 - MERVK26-int LTR ERVK -1744 5175 1049 3 648 4408 179 44 14 chr1 8285794 8286642 -188908790 + Lx2B LINE L1 6123 6995 -5 3 648 207 0 0 0 chr1 8287855 8287878 -188907554 + (T)n Simple_repeat Simple_repeat 1 23 0 3 648 278 320 92 25 chr1 8287990 8288358 -188907074 - L1MD LINE L1 -761 5385 4993 3 648 31 0 0 0 chr1 8288363 8288394 -188907038 + AT_rich Low_complexity Low_complexity 1 31 0 3 648 333 0 0 0 chr1 8288472 8288509 -188906923 + (T)n Simple_repeat Simple_repeat 1 37 0 3 648 351 333 30 23 chr1 8288916 8289048 -188906384 + Lx8 LINE L1 6211 6343 -1130 3 648 718 308 132 35 chr1 8289046 8290528 -188904904 - L1M2 LINE L1 -2872 3271 1628 3 648 1612 220 22 27 chr1 8290629 8290998 -188904434 - ORR1B2 LTR MaLR 0 367 1 3 648 4546 229 79 21 chr1 8290998 8292213 -188903219 - ORR1B2-int LTR MaLR 0 1509 224 3 648 9167 181 27 26 chr1 8292214 8293442 -188901990 + L1_Mur1 LINE L1 1080 2279 -1633 3 648 450 0 0 0 chr1 8293442 8293492 -188901940 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 3 648 9167 184 29 33 chr1 8293492 8294545 -188900887 + L1_Mur1 LINE L1 2280 3356 -556 3 648 1788 136 86 0 chr1 8294549 8294850 -188900582 + IAPEY3_LTR LTR ERVK 1 327 -5 3 648 641 153 0 0 chr1 8294867 8294978 -188900454 + L1_Mur1 LINE L1 3370 3480 -432 3 648 29399 130 30 5 chr1 8295025 8301370 -188894062 + L1_Mus1 LINE L1 98 6565 -2 3 648 5997 137 13 109 chr1 8301385 8302302 -188893130 + L1_Mus1 LINE L1 1952 2877 -3006 3 648 583 208 15 37 chr1 8302302 8302437 -188892995 - RLTR9C LTR ERVK 0 393 262 3 648 5997 137 13 109 chr1 8302437 8302658 -188892774 + L1_Mus1 LINE L1 2878 3102 -2781 3 648 9997 103 3 5 chr1 8302658 8304892 -188890540 + L1_Mus1 LINE L1 4336 6565 -2 3 648 340 101 33 22 chr1 8304925 8305016 -188890416 + (CAAAC)n Simple_repeat Simple_repeat 3 94 0 3 648 10893 172 66 17 chr1 8305016 8307432 -188888000 + Lx2B LINE L1 3475 6013 -987 3 648 1039 92 0 0 chr1 8307434 8307576 -188887856 + B1_Mus1 SINE Alu 6 147 -1 3 648 420 248 44 88 chr1 8307439 8307598 -188887834 + B4A SINE B4 95 246 -46 3 648 408 71 0 0 chr1 8307598 8307654 -188887778 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 648 2838 236 110 16 chr1 8307663 8308489 -188886943 + Lx2B LINE L1 5997 6996 -62 3 648 656 250 122 25 chr1 8308514 8308711 -188886721 - ORR1B2-int LTR MaLR -1292 217 2 3 648 1461 226 76 3 chr1 8308713 8309054 -188886378 - ORR1B2 LTR MaLR -1 366 1 3 648 319 297 25 88 chr1 8309220 8309460 -188885972 - L1MEb LINE L1 -5124 946 722 3 648 1206 239 26 57 chr1 8309598 8309984 -188885448 + ORR1D1 LTR MaLR 1 374 0 3 648 921 243 55 94 chr1 8309984 8310293 -188885139 + ORR1D1-int LTR MaLR 1 297 -1073 3 648 3603 194 118 64 chr1 8310384 8311229 -188884203 - RMER19B LTR ERVK -11 891 1 3 648 350 333 83 39 chr1 8311908 8312558 -188882874 + L1M4 LINE L1 433 1111 -5431 3 648 313 293 92 20 chr1 8312558 8312617 -188882815 - RLTR15 LTR ERVK -79 280 223 3 648 999 80 0 0 chr1 8312617 8312755 -188882677 + (TTCTG)n Simple_repeat Simple_repeat 2 139 0 3 648 313 293 92 20 chr1 8312755 8312848 -188882584 - RLTR15 LTR ERVK -137 222 118 3 648 37 23 0 0 chr1 8313106 8313150 -188882282 + AT_rich Low_complexity Low_complexity 1 44 0 3 648 394 334 52 67 chr1 8313468 8313798 -188881634 + Ricksha_0 DNA MuDR 391 715 -1018 3 648 393 272 66 50 chr1 8313805 8314107 -188881325 + Ricksha_0 DNA MuDR 1402 1708 -25 3 648 317 277 20 0 chr1 8314345 8314446 -188880986 + L1MB7 LINE L1 5669 5771 -413 3 648 403 279 40 7 chr1 8314567 8314715 -188880717 + L1MB7 LINE L1 5958 6110 -74 3 648 28 29 0 0 chr1 8315234 8315269 -188880163 + AT_rich Low_complexity Low_complexity 1 35 0 3 648 351 0 0 0 chr1 8315966 8316005 -188879427 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3 648 1989 233 46 23 chr1 8316012 8316451 -188878981 - Lx5 LINE L1 -2 7048 6600 3 648 403 188 30 40 chr1 8316556 8316656 -188878776 - Lx4B LINE L1 -4 7054 6956 3 648 3992 194 79 8 chr1 8316689 8317579 -188877853 - Lx5 LINE L1 -438 6612 5661 3 648 253 263 55 68 chr1 8317770 8317933 -188877499 + RMER16-int LTR ERVK 47 207 -3107 3 648 21 36 0 0 chr1 8318027 8318055 -188877377 + AT_rich Low_complexity Low_complexity 1 28 0 3 648 4100 176 50 35 chr1 8318186 8319293 -188876139 + RMER16-int LTR ERVK 255 2125 -5281 3 648 2939 115 75 59 chr1 8319293 8319837 -188875595 + Lx2 LINE L1 6443 6995 -2 3 648 348 24 0 0 chr1 8320166 8320207 -188875225 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 648 4504 147 25 22 chr1 8320207 8320505 -188874927 - RLTR22_Mur LTR ERVK -1043 805 505 3 648 7066 65 20 33 chr1 8320505 8321495 -188873937 + RLTR13A3 LTR ERVK 2 978 0 3 648 4504 147 25 22 chr1 8321495 8321999 -188873433 - RLTR22_Mur LTR ERVK -1344 504 1 3 648 351 0 0 0 chr1 8322204 8322243 -188873189 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 648 870 330 37 0 chr1 8322352 8322622 -188872810 - MTE2b LTR MaLR -4 375 96 3 648 1245 343 88 32 chr1 8322784 8323511 -188871921 - MTE-int LTR MaLR -230 1350 587 3 648 387 0 0 0 chr1 8323511 8323554 -188871878 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 648 915 326 38 21 chr1 8323554 8323927 -188871505 - MTE-int LTR MaLR -993 587 211 3 648 25 75 0 0 chr1 8324056 8324109 -188871323 + AT_rich Low_complexity Low_complexity 1 53 0 3 648 1304 318 62 22 chr1 8324124 8324864 -188870568 - L1M2 LINE L1 -2029 4114 3345 3 648 243 0 0 0 chr1 8325038 8325065 -188870367 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 648 423 244 114 109 chr1 8325711 8325904 -188869528 - MTD LTR MaLR -1 418 225 3 648 719 263 121 5 chr1 8325979 8326178 -188869254 + MTD LTR MaLR 3 224 -195 3 648 263 318 0 9 chr1 8326362 8326535 -188868897 + (TTG)n Simple_repeat Simple_repeat 1 171 0 3 648 1247 302 44 23 chr1 8327072 8327563 -188867869 + Lx5 LINE L1 6092 6805 -655 3 648 22 0 0 0 chr1 8327570 8327592 -188867840 + AT_rich Low_complexity Low_complexity 1 22 0 3 648 252 59 0 0 chr1 8328047 8328081 -188867351 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 648 3290 65 0 0 chr1 8328276 8328717 -188866715 + L1_Mus1 LINE L1 6144 6567 0 3 648 333 0 0 0 chr1 8329907 8329944 -188865488 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 648 453 94 35 0 chr1 8330044 8330129 -188865303 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 648 12744 143 39 82 chr1 8330204 8331338 -188864094 + L1_Mm LINE L1 2178 3379 -2504 3 648 2289 111 245 27 chr1 8331338 8331819 -188863613 - RLTR6_Mm LTR ERV1 -32 622 37 3 648 12744 143 39 82 chr1 8331819 8331864 -188863568 + L1_Mm LINE L1 3380 3426 -2457 3 648 238 161 219 31 chr1 8331864 8331928 -188863504 - RLTR6_Mm LTR ERV1 -578 76 1 3 648 12744 143 39 82 chr1 8331928 8334167 -188861265 + L1_Mm LINE L1 3427 5803 -80 3 648 4939 134 43 1 chr1 8334163 8335031 -188860401 + L1_Mur1 LINE L1 1638 2541 -3345 3 648 252 0 0 0 chr1 8335358 8335386 -188860046 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 648 1088 67 0 0 chr1 8335386 8335521 -188859911 - B1_Mus1 SINE Alu -13 135 1 3 648 465 324 49 7 chr1 8337077 8337220 -188858212 - RSINE1 SINE B4 -4 161 13 3 648 436 330 56 6 chr1 8337300 8337480 -188857952 + MLT2B4 LTR ERVL 4 192 -364 3 648 203 88 29 0 chr1 8338260 8338294 -188857138 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 648 3279 259 70 33 chr1 8340249 8342059 -188853373 - Lx6 LINE L1 -15 7445 5282 3 648 301 266 63 16 chr1 8342290 8342416 -188853016 - L1MD LINE L1 -2947 3199 3068 3 648 602 284 19 24 chr1 8343166 8343375 -188852057 - B3 SINE B2 -7 209 2 3 648 183 42 0 0 chr1 8343506 8343530 -188851902 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 648 339 105 0 0 chr1 8343531 8343588 -188851844 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 3 648 633 90 0 0 chr1 8343696 8343785 -188851647 + (T)n Simple_repeat Simple_repeat 1 89 0 3 648 1081 102 7 0 chr1 8343785 8343932 -188851500 - B1_Mus1 SINE Alu 0 148 1 3 648 267 240 152 23 chr1 8344055 8344187 -188851245 - RLTR21 LTR ERVK -666 906 758 3 648 4930 133 59 19 chr1 8345138 8345996 -188849436 - Lx LINE L1 -5 6649 5757 3 648 793 112 0 0 chr1 8345998 8346105 -188849327 - Lx2 LINE L1 -557 6440 6334 3 648 7844 127 22 28 chr1 8346104 8347989 -188847443 - Lx3B LINE L1 -447 6526 4678 3 648 2977 111 9 0 chr1 8347989 8348430 -188847002 + Lx3_Mus LINE L1 6557 7001 -8 3 648 1621 116 0 0 chr1 8348450 8348692 -188846740 - Lx2 LINE L1 -676 6321 6080 3 648 915 191 26 5 chr1 8348729 8348919 -188846513 + B2_Mm2 SINE B2 1 194 -1 3 648 27 29 0 0 chr1 8348993 8349027 -188846405 + AT_rich Low_complexity Low_complexity 1 34 0 3 648 35 0 0 0 chr1 8350019 8350054 -188845378 + AT_rich Low_complexity Low_complexity 1 35 0 3 648 765 291 48 5 chr1 8351544 8351751 -188843681 - B3 SINE B2 0 216 1 3 648 21 0 0 0 chr1 8352135 8352156 -188843276 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 228 372 51 0 chr1 8356085 8356241 -188839191 + L1_Mur3 LINE L1 109 272 -7456 3 648 306 0 0 0 chr1 8356274 8356308 -188839124 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 648 1512 226 84 15 chr1 8356565 8357075 -188838357 + L1_Mur3 LINE L1 859 1405 -4475 3 648 315 0 0 0 chr1 8357075 8357110 -188838322 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 648 581 208 180 23 chr1 8357110 8357194 -188838238 + L1_Mur3 LINE L1 1406 1505 -4375 3 648 30042 81 12 53 chr1 8357191 8362562 -188832870 + L1Md_F3 LINE L1 439 5586 -297 3 648 8079 40 9 1 chr1 8362562 8363550 -188831882 + L1Md_F3 LINE L1 5587 6582 -2 3 648 4250 214 41 130 chr1 8363551 8364486 -188830946 + L1_Mur3 LINE L1 1491 2411 -3469 3 648 222 37 0 0 chr1 8364486 8364513 -188830919 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 648 4250 214 41 130 chr1 8364513 8364531 -188830901 + L1_Mur3 LINE L1 2412 2428 -3452 3 648 511 273 38 0 chr1 8364531 8364663 -188830769 - B1_Mus1 SINE Alu 0 148 12 4 648 4250 214 41 130 chr1 8364663 8365311 -188830121 + L1_Mur3 LINE L1 2429 3069 -2811 3 648 7281 88 266 39 chr1 8365567 8367751 -188827681 + L1Md_F LINE L1 524 3201 -2682 4 648 379 284 69 73 chr1 8367871 8368103 -188827329 + L1MDa LINE L1 1193 1423 -5210 4 648 5823 117 73 1 chr1 8368112 8368142 -188827290 - L1_Mur1 LINE L1 -2366 3520 3470 4 648 519 60 0 0 chr1 8368142 8368209 -188827223 + (TTTTC)n Simple_repeat Simple_repeat 4 70 0 4 648 5823 117 73 1 chr1 8368209 8369168 -188826264 - L1_Mur1 LINE L1 -2417 3469 2461 4 648 5540 119 66 16 chr1 8369167 8370128 -188825304 + Lx3_Mus LINE L1 5543 6544 -465 4 648 2585 227 42 48 chr1 8370122 8370928 -188824504 + L1Md_F LINE L1 1 734 -5785 4 648 1072 73 0 0 chr1 8370926 8371076 -188824356 - L1_Mm LINE L1 -2492 3391 3242 4 648 7486 82 12 3 chr1 8371077 8372273 -188823159 + L1_Mus1 LINE L1 5398 6566 -1 4 648 4385 146 89 20 chr1 8372273 8373119 -188822313 + RMER17A2 LTR ERVK 1 904 -2 4 648 3099 269 55 67 chr1 8373119 8373541 -188821891 + L1_Mus1 LINE L1 6544 7000 -9 4 648 265 257 232 35 chr1 8373649 8373903 -188821529 + L1MDa LINE L1 1579 1882 -4751 4 648 575 311 152 7 chr1 8373935 8374483 -188820949 - L1M3 LINE L1 -1591 4549 3923 4 648 2746 58 3 6 chr1 8374594 8374940 -188820492 + IAPLTR4 LTR ERVK 1 345 0 4 648 4973 68 1 48 chr1 8375244 8375951 -188819481 + L1_Mus1 LINE L1 5894 6567 0 4 648 304 244 103 17 chr1 8376144 8376319 -188819113 + L1M3 LINE L1 4307 4496 -1644 4 648 7819 171 100 8 chr1 8376906 8379636 -188815796 - Lx2 LINE L1 0 6997 3971 4 648 552 68 0 0 chr1 8379636 8379709 -188815723 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 4 648 2175 11 115 0 chr1 8379709 8379969 -188815463 - RLTR10B LTR ERVK -1 291 2 4 648 416 19 19 0 chr1 8379969 8380022 -188815410 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 648 26959 135 53 24 chr1 8380053 8386168 -188809264 - L1_Mus2 LINE L1 0 6566 300 4 1 12553 145 27 25 chr1 8386247 8389618 -188805814 - Lx2 LINE L1 -1907 3979 595 4 649 29905 93 18 9 chr1 8389868 8395029 -188800403 + L1Md_F2 LINE L1 380 5586 -297 4 649 7065 89 5 12 chr1 8395030 8396030 -188799402 + L1Md_F2 LINE L1 5588 6580 -2 4 649 24 0 0 0 chr1 8396142 8396166 -188799266 + AT_rich Low_complexity Low_complexity 1 24 0 4 649 1065 68 0 33 chr1 8396378 8396529 -188798903 + B1_Mm SINE Alu 2 147 0 4 649 232 25 24 48 chr1 8396529 8396571 -188798861 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 4 649 25452 155 17 24 chr1 8396664 8400768 -188794664 + L1_Mus3 LINE L1 721 4792 -1091 4 649 2296 133 67 39 chr1 8400768 8401230 -188794202 + IAPLTR2_Mm LTR ERVK 1 475 0 4 649 25452 125 34 5 chr1 8401230 8403028 -188792404 + L1_Mus3 LINE L1 4793 6632 -6 4 649 1002 64 50 0 chr1 8403036 8403176 -188792256 + B1_Mm SINE Alu 1 147 0 4 649 27 0 0 0 chr1 8403615 8403642 -188791790 + AT_rich Low_complexity Low_complexity 1 27 0 4 649 24 0 0 0 chr1 8403918 8403942 -188791490 + AT_rich Low_complexity Low_complexity 1 24 0 4 649 2755 214 60 50 chr1 8404923 8405230 -188790202 + Lx6 LINE L1 5478 5789 -1671 4 649 1069 96 0 0 chr1 8405230 8405366 -188790066 + B1_Mm SINE Alu 3 138 -9 4 649 207 0 0 0 chr1 8405366 8405389 -188790043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 649 2755 232 81 47 chr1 8405389 8406000 -188789432 + Lx6 LINE L1 5790 6438 -1022 4 649 1235 300 7 7 chr1 8406025 8406320 -188789112 + Lx6 LINE L1 6990 7284 -176 4 649 399 329 52 26 chr1 8407366 8407519 -188787913 - MER5A DNA MER1_type -4 185 29 4 649 348 24 0 0 chr1 8408369 8408410 -188787022 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 649 1566 63 18 0 chr1 8408410 8408631 -188786801 + L1_Mus3 LINE L1 6414 6638 0 4 649 388 336 74 33 chr1 8408751 8408994 -188786438 - B4A SINE B4 -5 287 35 4 649 32 43 0 0 chr1 8409364 8409410 -188786022 + AT_rich Low_complexity Low_complexity 1 46 0 4 649 249 133 26 13 chr1 8409422 8409498 -188785934 + T-rich Low_complexity Low_complexity 3 79 0 4 649 1047 116 0 0 chr1 8409498 8409645 -188785787 - B1_Mus2 SINE Alu 0 147 1 4 649 3907 145 2 5 chr1 8409734 8410349 -188785083 - L1_Mm LINE L1 -70 5813 5201 4 649 2092 204 135 22 chr1 8410336 8410774 -188784658 + Lx7 LINE L1 5288 5785 -95 4 649 591 172 126 63 chr1 8410774 8410948 -188784484 + B2_Mm2 SINE B2 3 187 -8 4 649 2092 216 94 31 chr1 8410948 8411104 -188784328 + Lx7 LINE L1 5786 5948 -1748 4 649 1274 217 198 8 chr1 8411105 8411395 -188784037 - RMER4B LTR ERVK 0 585 224 4 649 830 29 9 0 chr1 8411395 8411500 -188783932 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 4 649 1274 217 198 8 chr1 8411500 8411572 -188783860 - RMER4B LTR ERVK -362 223 154 4 649 826 259 125 17 chr1 8411613 8411966 -188783466 + Lx7 LINE L1 5928 6318 -1378 4 649 1699 146 50 65 chr1 8411966 8412289 -188783143 + ORR1A3 LTR MaLR 1 318 -8 4 649 914 218 50 23 chr1 8412298 8412519 -188782913 + Lx6 LINE L1 6308 6534 -926 4 649 243 211 23 38 chr1 8413056 8413189 -188782243 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 649 2594 186 101 65 chr1 8413250 8413522 -188781910 + RMER6C LTR ERVK 4 305 -385 4 649 2120 114 19 43 chr1 8413522 8413898 -188781534 + Lx2 LINE L1 6631 6997 0 4 649 2594 186 101 65 chr1 8413898 8414288 -188781144 + RMER6C LTR ERVK 306 689 -1 4 649 281 289 77 56 chr1 8414382 8414525 -188780907 - Lx9 LINE L1 -427 7217 7072 4 649 486 330 0 22 chr1 8414538 8414721 -188780711 - Lx8 LINE L1 -974 6499 6321 4 649 1488 286 128 25 chr1 8414990 8416007 -188779425 - Lx9 LINE L1 -1535 6109 4974 4 649 183 42 0 0 chr1 8416057 8416081 -188779351 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 649 716 255 77 39 chr1 8416081 8416391 -188779041 + L1_Rod LINE L1 4094 4415 -1432 4 649 24 32 0 0 chr1 8417229 8417260 -188778172 + AT_rich Low_complexity Low_complexity 1 31 0 4 649 353 348 112 13 chr1 8417497 8417730 -188777702 + MER2 DNA MER2_type 84 339 -6 4 649 2199 181 81 75 chr1 8417984 8418505 -188776927 + RLTR28 LTR ERVL 1 524 0 4 649 747 198 173 25 chr1 8419141 8419338 -188776094 - Lx9 LINE L1 -442 7202 6977 4 649 422 200 0 45 chr1 8419400 8419489 -188775943 - MTC LTR MaLR -329 92 8 4 649 21 0 0 0 chr1 8419528 8419549 -188775883 + AT_rich Low_complexity Low_complexity 1 21 0 4 649 242 380 0 0 chr1 8419968 8420047 -188775385 - ID4 SINE ID -4 79 1 4 649 7554 183 28 50 chr1 8420296 8421836 -188773596 + MERVL_2A-int LTR ERVL 991 2496 -3265 4 649 3280 158 43 3 chr1 8421833 8422418 -188773014 + MERVL_2A-int LTR ERVL 2956 3563 -2198 4 649 1043 86 0 0 chr1 8423062 8423201 -188772231 + B1_Mus2 SINE Alu 1 139 -8 4 649 42 71 0 0 chr1 8423304 8423388 -188772044 + AT_rich Low_complexity Low_complexity 1 84 0 4 649 2805 218 85 29 chr1 8423445 8423591 -188771841 - Lx5 LINE L1 -175 6875 6744 4 649 180 0 0 0 chr1 8423591 8423611 -188771821 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 649 3205 53 5 0 chr1 8423611 8424004 -188771428 - MTA_Mm LTR MaLR -1 395 1 4 649 2805 218 85 29 chr1 8424004 8424513 -188770919 - Lx5 LINE L1 -307 6743 6183 4 649 2702 160 56 3 chr1 8424535 8425234 -188770198 - Lx5 LINE L1 -937 6113 5368 4 649 448 316 57 45 chr1 8425247 8425582 -188769850 + RLTR17 LTR ERVK 33 426 -266 4 649 492 206 0 0 chr1 8425924 8426031 -188769401 - L1_Mur2 LINE L1 -504 5373 5267 4 649 2415 65 68 3 chr1 8426035 8426360 -188769072 - ORR1A1 LTR MaLR 0 346 1 4 649 1384 44 11 16 chr1 8426360 8426546 -188768886 - ORR1A1-int LTR MaLR 0 1792 1608 4 649 2870 148 2 8 chr1 8426546 8427031 -188768401 - L1_Mur2 LINE L1 -628 5249 4768 4 649 21268 70 6 1 chr1 8427044 8430348 -188765084 + L1Md_F2 LINE L1 3020 6340 -242 4 649 2700 65 0 0 chr1 8430346 8430702 -188764730 - L1Md_F2 LINE L1 -1505 4378 4023 4 649 9489 64 2 0 chr1 8430701 8431910 -188763522 + L1Md_F2 LINE L1 4376 5586 -297 4 649 8065 47 1 1 chr1 8431910 8432894 -188762538 + L1Md_F2 LINE L1 5587 6570 -12 4 649 1596 66 61 9 chr1 8432897 8433125 -188762307 + L1Md_F2 LINE L1 6329 6568 -14 4 649 742 267 31 31 chr1 8433146 8433339 -188762093 + B3 SINE B2 3 195 -21 4 649 266 318 39 13 chr1 8433394 8433547 -188761885 + L1MB8 LINE L1 6017 6173 -5 4 649 304 290 14 0 chr1 8435302 8435371 -188760061 + ID4_ SINE ID 3 72 -11 4 649 514 301 21 7 chr1 8436926 8437070 -188758362 - ID_B1 SINE B4 0 224 79 4 649 207 88 0 0 chr1 8437857 8437891 -188757541 + (A)n Simple_repeat Simple_repeat 1 34 0 4 649 374 313 101 120 chr1 8439843 8440119 -188755313 - B4A SINE B4 -21 271 1 4 649 30 27 0 0 chr1 8440861 8440898 -188754534 + AT_rich Low_complexity Low_complexity 1 37 0 4 649 1581 214 83 10 chr1 8442119 8442506 -188752926 + L1_Mur3 LINE L1 260 674 -7038 4 649 31 26 0 0 chr1 8442680 8442718 -188752714 + AT_rich Low_complexity Low_complexity 1 38 0 4 649 314 45 23 0 chr1 8442774 8442818 -188752614 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 649 2597 62 3 3 chr1 8443041 8443380 -188752052 + L1_Mus2 LINE L1 6228 6566 0 4 649 855 126 0 0 chr1 8443929 8444088 -188751344 + (TC)n Simple_repeat Simple_repeat 2 160 0 4 649 380 246 33 25 chr1 8444315 8444436 -188750996 + L1MA6 LINE L1 5865 5986 -314 4 649 353 279 114 53 chr1 8444618 8445011 -188750421 + Lx9 LINE L1 5663 6110 -1534 4 649 662 84 0 9 chr1 8445080 8445188 -188750244 + (TC)n Simple_repeat Simple_repeat 2 108 0 4 649 1792 330 75 41 chr1 8445236 8446332 -188749100 + Lx9 LINE L1 6367 7499 -145 4 649 267 31 0 0 chr1 8446343 8446375 -188749057 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 649 1172 7 6 26 chr1 8446372 8446411 -188749021 + (GAA)n Simple_repeat Simple_repeat 3 41 0 4 649 1490 11 0 17 chr1 8446411 8446592 -188748840 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 649 1172 7 6 26 chr1 8446592 8446708 -188748724 + (GAA)n Simple_repeat Simple_repeat 3 116 0 4 649 262 282 73 0 chr1 8446805 8446915 -188748517 + L1MA6 LINE L1 6168 6285 -15 4 649 575 297 14 0 chr1 8448140 8448285 -188747147 - B3 SINE B2 -68 148 2 4 649 26 50 0 0 chr1 8448345 8448385 -188747047 + AT_rich Low_complexity Low_complexity 1 40 0 4 649 25 51 0 0 chr1 8448884 8448923 -188746509 + AT_rich Low_complexity Low_complexity 1 39 0 4 649 1016 246 183 7 chr1 8449870 8450160 -188745272 + Lx5 LINE L1 6710 7050 0 4 649 281 348 13 13 chr1 8450446 8450603 -188744829 + (CAGAGA)n Simple_repeat Simple_repeat 6 162 0 4 649 262 276 78 56 chr1 8451117 8451259 -188744173 + L1MA4 LINE L1 5785 5929 -371 4 649 445 331 23 0 chr1 8451451 8451581 -188743851 - B1_Mur1 SINE Alu -15 134 2 4 649 433 256 67 22 chr1 8451766 8451946 -188743486 + L1M2 LINE L1 5315 5502 -789 4 649 3762 92 22 4 chr1 8452130 8452676 -188742756 + L1Md_F2 LINE L1 6026 6581 -1 4 649 23 78 0 0 chr1 8453905 8453956 -188741476 + AT_rich Low_complexity Low_complexity 1 51 0 4 649 243 359 63 84 chr1 8454466 8454752 -188740680 + ORR1D1 LTR MaLR 87 366 -8 4 649 273 284 62 35 chr1 8454863 8454976 -188740456 - PB1D7 SINE Alu -4 116 1 5 649 26 50 0 0 chr1 8455049 8455089 -188740343 + AT_rich Low_complexity Low_complexity 1 40 0 5 649 21 0 0 0 chr1 8456074 8456095 -188739337 + AT_rich Low_complexity Low_complexity 1 21 0 5 649 652 285 84 46 chr1 8456189 8456535 -188738897 + RLTR15 LTR ERVK 1 359 0 5 649 25 31 0 0 chr1 8457322 8457354 -188738078 + AT_rich Low_complexity Low_complexity 1 32 0 5 649 788 237 26 26 chr1 8457471 8457666 -188737766 + MTD LTR MaLR 25 219 -200 5 649 1208 129 0 0 chr1 8457666 8457844 -188737588 + L1_Mus4 LINE L1 6100 6277 -359 5 649 450 36 0 0 chr1 8457864 8457920 -188737512 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 649 200 128 0 25 chr1 8458960 8459000 -188736432 + (CTG)n Simple_repeat Simple_repeat 3 41 0 5 649 22 56 0 0 chr1 8459227 8459263 -188736169 + AT_rich Low_complexity Low_complexity 1 36 0 5 649 2200 97 25 17 chr1 8459295 8459650 -188735782 + L1_Mus4 LINE L1 6279 6636 0 5 649 960 235 35 5 chr1 8459651 8459852 -188735580 + MTD LTR MaLR 200 406 -13 5 649 2386 291 85 57 chr1 8459859 8460397 -188735035 + MTD-int LTR MaLR 1 636 -622 5 649 4354 145 23 118 chr1 8460397 8460847 -188734585 + RMER17A2 LTR ERVK 1 445 -461 5 649 566 28 14 0 chr1 8460847 8460919 -188734513 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 649 4354 145 23 118 chr1 8460919 8461468 -188733964 + RMER17A2 LTR ERVK 446 905 -1 5 649 2386 290 76 50 chr1 8461468 8462133 -188733299 + MTD-int LTR MaLR 537 1254 -4 5 649 1484 272 51 0 chr1 8462141 8462535 -188732897 + MTD LTR MaLR 5 418 -1 5 649 6179 116 3 13 chr1 8463130 8464058 -188731374 + L1_Mus4 LINE L1 5683 6601 -35 5 649 228 237 269 0 chr1 8465111 8465204 -188730228 - Charlie1b DNA MER1_type -218 305 188 5 649 294 275 0 29 chr1 8465433 8465538 -188729894 + GA-rich Low_complexity Low_complexity 2 103 0 5 649 23 33 0 0 chr1 8465887 8465917 -188729515 + AT_rich Low_complexity Low_complexity 1 30 0 5 649 21 0 0 0 chr1 8466596 8466617 -188728815 + AT_rich Low_complexity Low_complexity 1 21 0 5 649 314 292 83 36 chr1 8466681 8466873 -188728559 + L1M5 LINE L1 3455 3655 -2491 5 649 3598 123 25 88 chr1 8466910 8467712 -188727720 - RMER17A LTR ERVK 0 751 1 5 649 355 157 48 0 chr1 8467759 8467842 -188727590 - Lx7 LINE L1 0 7696 7610 5 649 339 113 0 0 chr1 8467870 8467932 -188727500 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 649 212 184 0 20 chr1 8467933 8467983 -188727449 + A-rich Low_complexity Low_complexity 4 52 0 5 649 858 329 22 53 chr1 8467983 8468397 -188727035 - Lx7 LINE L1 -403 7293 6893 5 649 366 61 0 0 chr1 8468397 8468446 -188726986 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 649 241 268 71 35 chr1 8468446 8468531 -188726901 - Lx7 LINE L1 -791 6905 6818 5 649 784 232 145 0 chr1 8468741 8468948 -188726484 - Lx7 LINE L1 -885 6811 6575 5 649 1090 265 107 10 chr1 8468971 8469356 -188726076 - Lx7 LINE L1 -17 5863 5442 5 649 230 216 53 26 chr1 8469726 8469802 -188725630 - L1M3 LINE L1 -617 5551 5474 5 649 291 312 24 16 chr1 8470049 8470176 -188725256 - L1M3 LINE L1 -689 5479 5352 5 649 1200 111 0 0 chr1 8470177 8470357 -188725075 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 649 207 67 65 22 chr1 8470358 8470404 -188725028 + GA-rich Low_complexity Low_complexity 1 48 0 5 649 430 277 8 8 chr1 8470455 8470586 -188724846 - L1M3 LINE L1 -867 5273 5143 5 649 18257 147 12 3 chr1 8470599 8473481 -188721951 - L1_Mus3 LINE L1 -4 6634 3734 5 649 4089 63 2 8 chr1 8473481 8473996 -188721436 + LTRIS3 LTR ERV1 1 512 0 5 649 18257 163 18 5 chr1 8473996 8475192 -188720240 - L1_Mus3 LINE L1 -2150 3733 2510 5 649 844 103 97 0 chr1 8475184 8475329 -188720103 + MusHAL1 LINE L1 1059 1217 -1495 5 649 462 254 15 37 chr1 8475329 8475464 -188719968 + ORR1B1 LTR MaLR 263 394 0 5 649 1818 269 183 29 chr1 8475464 8476115 -188719317 - RMER15-int LTR ERVL -1328 3671 2903 5 649 551 53 13 0 chr1 8476115 8476190 -188719242 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 5 649 1818 269 183 29 chr1 8476190 8476320 -188719112 - RMER15-int LTR ERVL -2097 2902 2771 5 649 1907 324 20 9 chr1 8476321 8477053 -188718379 - RMER15-int LTR ERVL -2375 2624 1965 5 649 24 67 0 0 chr1 8477172 8477217 -188718215 + AT_rich Low_complexity Low_complexity 1 45 0 5 649 4940 282 70 29 chr1 8477534 8479098 -188716334 - RMER15-int LTR ERVL -3368 1631 3 5 649 1960 256 45 13 chr1 8479100 8479657 -188715775 - RMER15 LTR ERVL 0 575 1 5 649 2114 210 12 101 chr1 8480075 8480133 -188715299 + RMER15 LTR ERVL 22 74 -501 5 649 1577 37 21 0 chr1 8480133 8480322 -188715110 + B2_Mm1t SINE B2 1 193 0 5 649 2114 210 12 101 chr1 8480322 8480773 -188714659 + RMER15 LTR ERVL 75 485 -90 5 649 1839 184 32 71 chr1 8480773 8480794 -188714638 - ORR1C1 LTR MaLR 0 378 363 5 649 2708 168 48 2 chr1 8480794 8481295 -188714137 - RLTR28 LTR ERVL 0 524 1 5 649 1839 184 32 71 chr1 8481295 8481653 -188713779 - ORR1C1 LTR MaLR -16 362 14 5 649 325 253 53 0 chr1 8481901 8481976 -188713456 - ID4_ SINE ID 0 83 5 5 649 231 344 31 41 chr1 8482299 8482396 -188713036 - ORR1E LTR MaLR -256 103 8 5 649 914 356 39 23 chr1 8482410 8483006 -188712426 - ORR1E-int LTR MaLR -8 1362 806 5 649 377 325 86 36 chr1 8482995 8483215 -188712217 - MTEb LTR MaLR -69 310 80 5 649 667 186 0 65 chr1 8483286 8483424 -188712008 - B1_Mus1 SINE Alu -19 129 1 5 649 478 285 189 41 chr1 8483455 8484063 -188711369 - L1MC LINE L1 -860 5286 4589 5 649 272 340 86 5 chr1 8484965 8485163 -188710269 + L1MEg LINE L1 359 572 -5512 5 649 28 48 0 0 chr1 8485304 8485346 -188710086 + AT_rich Low_complexity Low_complexity 1 42 0 5 649 38 39 0 0 chr1 8485387 8485439 -188709993 + AT_rich Low_complexity Low_complexity 1 52 0 5 649 195 351 87 9 chr1 8487224 8487339 -188708093 - L2a LINE L2 -225 3201 3078 5 649 234 226 73 145 chr1 8487357 8487481 -188707951 - ORR1D1 LTR MaLR -20 354 240 5 649 809 284 107 14 chr1 8487548 8487912 -188707520 + L1_Mur3 LINE L1 5470 5867 -13 5 649 21 36 0 0 chr1 8488539 8488567 -188706865 + AT_rich Low_complexity Low_complexity 1 28 0 5 649 1932 281 69 3 chr1 8488991 8489627 -188705805 - Lx9 LINE L1 0 7644 6967 5 649 1981 134 25 171 chr1 8490664 8491195 -188704237 + RLTR11B LTR ERVK 1 453 0 5 649 432 358 75 36 chr1 8491242 8491575 -188703857 + RLTR11A2 LTR ERVK 152 497 -30 5 649 273 266 10 21 chr1 8492389 8492485 -188702947 + CT-rich Low_complexity Low_complexity 2 96 0 5 649 513 32 0 0 chr1 8492986 8493049 -188702383 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 649 193 389 64 9 chr1 8493085 8493194 -188702238 - L2 LINE L2 -2857 562 448 5 649 789 182 8 0 chr1 8494459 8494591 -188700841 + B1_Mus2 SINE Alu 15 147 0 5 649 221 118 20 0 chr1 8494858 8494909 -188700523 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 5 649 2540 182 26 23 chr1 8495095 8495682 -188699750 + RLTR20C LTR ERVK 4 578 0 5 649 467 337 29 10 chr1 8496023 8496230 -188699202 - MLT1E2 LTR MaLR -389 238 28 5 649 252 356 0 0 chr1 8496379 8496466 -188698966 + Lx8 LINE L1 6268 6354 -1119 5 649 6798 141 16 4 chr1 8496472 8497619 -188697813 + L1_Mus3 LINE L1 4172 5331 -552 5 649 502 131 0 161 chr1 8497602 8497739 -188697693 - L1_Mm LINE L1 -466 5417 5303 5 649 5813 142 30 9 chr1 8497726 8498754 -188696678 - L1_Mm LINE L1 -806 5077 4028 5 649 7730 97 4 1 chr1 8498712 8499861 -188695571 + L1_Mus3 LINE L1 5479 6631 -7 5 649 540 208 69 0 chr1 8499870 8500000 -188695432 + L1Md_A LINE L1 414 552 -6172 5 649 27606 80 76 30 chr1 8500001 8504003 -188691429 + L1Md_A LINE L1 554 4864 -1019 1 649 227 291 36 73 chr1 8504003 8504140 -188691292 - MER72B LTR ERV1 -350 418 287 2 649 27606 80 76 30 chr1 8504140 8504809 -188690623 + L1Md_A LINE L1 4865 5586 -297 1 649 8251 36 0 10 chr1 8504809 8505817 -188689615 + L1Md_F3 LINE L1 5587 6584 0 3 649 280 294 46 23 chr1 8506173 8506260 -188689172 + MLT1E3 LTR MaLR 412 500 -124 4 649 295 301 165 69 chr1 8506376 8506722 -188688710 + MLT1E3-int LTR MaLR 22 400 -1089 4 649 406 269 111 0 chr1 8507070 8507178 -188688254 + B3 SINE B2 1 120 -96 5 649 275 305 89 67 chr1 8507236 8507415 -188688017 + MLT1E3-int LTR MaLR 844 1026 -463 4 649 35094 36 44 7 chr1 8507981 8513617 -188681815 + L1Md_T LINE L1 624 6463 -119 6 649 22473 47 2 10 chr1 8513614 8517088 -188678344 - L1Md_A LINE L1 -1823 4060 621 7 649 333 360 22 6 chr1 8517227 8517406 -188678026 - HERVL40-int LTR ERVL -2433 3097 2916 8 649 1086 186 29 24 chr1 8518172 8518381 -188677051 + BGLII_B LTR ERVK 232 441 0 9 649 330 311 45 15 chr1 8518521 8518655 -188676777 - HERVL40-int LTR ERVL -5343 187 50 8 649 238 289 96 0 chr1 8518731 8518814 -188676618 - LTR40a LTR ERVL -40 479 389 1 81 3990 245 69 5 chr1 8518940 8519939 -188675493 + Lx7 LINE L1 56 1118 -6610 1 650 9756 213 48 75 chr1 8519944 8523656 -188671776 + Lx7 LINE L1 3342 6990 -706 1 650 2373 205 118 72 chr1 8523656 8524526 -188670906 - RLTR13D6 LTR ERVK -35 867 1 1 650 2420 97 0 0 chr1 8524540 8524869 -188670563 - ETnERV3-int LTR ERVK -28 5780 5452 1 650 540 250 6 34 chr1 8524881 8525059 -188670373 + Lx7 LINE L1 7368 7540 -156 1 650 2442 136 32 58 chr1 8525276 8525707 -188669725 + RLTR9B2 LTR ERVK 1 420 0 1 650 241 145 32 0 chr1 8526071 8526133 -188669299 + A-rich Low_complexity Low_complexity 2 65 0 1 650 429 66 0 0 chr1 8526134 8526195 -188669237 + (CCA)n Simple_repeat Simple_repeat 1 61 0 1 650 234 0 0 0 chr1 8526195 8526221 -188669211 + (CAA)n Simple_repeat Simple_repeat 3 28 0 1 650 3840 58 77 4 chr1 8526222 8526742 -188668690 + LTRIS2 LTR ERV1 7 564 0 1 650 240 59 59 0 chr1 8527589 8527640 -188667792 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 650 4787 101 75 1 chr1 8528256 8528991 -188666441 - L1_Mus2 LINE L1 0 6566 5778 1 650 25498 118 13 4 chr1 8528991 8533185 -188662247 - L1_Mus2 LINE L1 -601 5282 1071 1 650 490 268 60 65 chr1 8533185 8533449 -188661983 - L1_Mus2 LINE L1 -5817 799 681 1 650 487 291 23 23 chr1 8533668 8533798 -188661634 + ID_B1 SINE B4 83 212 -12 2 650 255 277 57 89 chr1 8533689 8533812 -188661620 + B1_Mus1 SINE Alu 27 145 -3 2 650 1088 89 6 0 chr1 8533883 8534041 -188661391 + (GAGAA)n Simple_repeat Simple_repeat 3 161 0 2 650 263 281 73 59 chr1 8534095 8534231 -188661201 - LTR68 LTR ERV1 -87 653 516 2 650 28 29 0 0 chr1 8534592 8534627 -188660805 + AT_rich Low_complexity Low_complexity 1 35 0 2 650 1456 207 38 101 chr1 8536708 8537037 -188658395 + L1_Mur2 LINE L1 901 1242 -5844 2 650 1109 95 0 20 chr1 8537037 8537188 -188658244 + B1_Mus1 SINE Alu 1 148 0 2 650 15757 168 37 19 chr1 8537188 8538015 -188657417 + L1_Mur2 LINE L1 1232 2052 -3825 2 650 495 33 0 0 chr1 8538015 8538076 -188657356 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 650 15757 166 37 16 chr1 8538076 8540540 -188654892 + L1_Mur2 LINE L1 2053 4561 -1316 2 650 270 160 0 0 chr1 8540584 8540634 -188654798 + CT-rich Low_complexity Low_complexity 6 55 0 2 650 808 306 90 12 chr1 8540799 8541143 -188654289 - Lx7 LINE L1 -346 7350 6980 2 650 1181 61 0 7 chr1 8541164 8541313 -188654119 + B1_Mus1 SINE Alu 1 148 0 3 650 260 330 51 25 chr1 8541313 8541431 -188654001 + RMER5 LTR ERV1 247 367 -167 3 650 484 406 47 0 chr1 8541590 8541782 -188653650 - B4 SINE B4 -4 288 88 3 650 488 196 91 71 chr1 8541832 8541986 -188653446 + Lx9 LINE L1 6893 7049 -595 3 650 1163 190 14 5 chr1 8542004 8542221 -188653211 + RLTR25B LTR ERVK 1 219 -809 3 650 676 265 63 31 chr1 8542221 8542443 -188652989 + Lx9 LINE L1 7052 7280 -364 3 650 293 277 24 0 chr1 8542449 8542532 -188652900 - B4 SINE B4 -206 86 2 3 650 554 349 66 12 chr1 8542665 8542999 -188652433 + MER57F LTR ERV1 79 430 -6 3 650 25 51 0 0 chr1 8543777 8543816 -188651616 + AT_rich Low_complexity Low_complexity 1 39 0 3 650 368 252 6 69 chr1 8544080 8544255 -188651177 + Lx2B LINE L1 6833 6996 -4 3 650 546 263 139 6 chr1 8544331 8544511 -188650921 + B3 SINE B2 5 208 -8 3 650 302 203 0 33 chr1 8544921 8544982 -188650450 + PB1D9 SINE Alu 1 59 -61 4 650 461 186 30 30 chr1 8545064 8545164 -188650268 + B1_Mur2 SINE Alu 42 141 -8 4 650 3890 119 109 2 chr1 8546017 8546642 -188648790 + Lx3A LINE L1 6283 6974 -7 4 650 408 40 0 0 chr1 8547114 8547164 -188648268 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 650 278 313 42 12 chr1 8547191 8547359 -188648073 + L1M4 LINE L1 3914 4086 -2060 4 650 2089 91 17 13 chr1 8547598 8547898 -188647534 + L1_Mus2 LINE L1 6005 6305 -261 4 650 2796 184 75 61 chr1 8547914 8548792 -188646640 + RLTR13D1 LTR ERVK 10 839 -16 4 650 1667 68 109 27 chr1 8548792 8549049 -188646383 + L1_Mus2 LINE L1 6289 6566 0 4 650 191 125 0 24 chr1 8549509 8549550 -188645882 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 650 297 131 0 0 chr1 8549741 8549802 -188645630 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 650 4192 130 121 7 chr1 8550132 8550858 -188644574 - RMER17D2 LTR ERVK 0 809 1 5 650 445 304 129 114 chr1 8551069 8551473 -188643959 - Lx9 LINE L1 -267 7377 6968 5 650 494 233 0 6 chr1 8551525 8551706 -188643726 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 650 1634 307 90 29 chr1 8552107 8552905 -188642527 + Lx9 LINE L1 6102 7088 -556 5 650 5689 90 21 1 chr1 8553447 8554624 -188640808 + L1_Mus3 LINE L1 5022 6574 -434 5 650 2689 212 86 42 chr1 8554909 8555666 -188639766 - RLTR40 LTR ERVK -9 808 19 5 650 373 87 72 0 chr1 8556307 8556376 -188639056 - L1_Mus3 LINE L1 -7 6631 6558 5 650 288 332 78 32 chr1 8556504 8556977 -188638455 - L1MC3 LINE L1 -7 7778 7284 5 650 26 93 0 0 chr1 8557112 8557187 -188638245 + AT_rich Low_complexity Low_complexity 1 75 0 5 650 5879 111 1 2 chr1 8557299 8557310 -188638122 - L1_Mus4 LINE L1 -5 6631 6621 5 650 360 0 0 0 chr1 8557310 8557350 -188638082 + (TTA)n Simple_repeat Simple_repeat 3 42 0 6 650 5879 111 1 2 chr1 8557350 8558196 -188637236 - L1_Mus4 LINE L1 -16 6620 5776 5 650 19763 169 12 23 chr1 8558197 8560007 -188635425 - L1VL4 LINE L1 -788 5095 3341 6 650 1198 48 0 0 chr1 8560007 8560152 -188635280 - B1_Mm SINE Alu 0 147 3 6 650 19763 170 11 22 chr1 8560152 8562729 -188632703 - L1VL4 LINE L1 -2543 3340 755 6 650 4375 116 37 21 chr1 8562957 8563819 -188631613 + L1_Mus3 LINE L1 5715 6632 -6 6 650 2113 126 28 0 chr1 8563869 8564187 -188631245 + ORR1A2 LTR MaLR 1 327 0 6 650 275 369 27 7 chr1 8564202 8564352 -188631080 + Lx9 LINE L1 7265 7417 -227 6 650 263 307 29 93 chr1 8564948 8565088 -188630344 - MLT1D LTR MaLR -16 489 359 6 650 256 243 28 14 chr1 8565432 8565503 -188629929 - 4.5SRNA scRNA scRNA -14 80 9 6 650 269 335 48 0 chr1 8565514 8565681 -188629751 - L1M3 LINE L1 -814 5486 5312 6 650 186 43 0 0 chr1 8565696 8565719 -188629713 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 650 357 75 0 0 chr1 8565719 8565772 -188629660 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 650 884 313 99 59 chr1 8565776 8568037 -188627395 - L1M3 LINE L1 -869 5277 2947 6 650 2333 163 28 14 chr1 8568037 8568460 -188626972 - Lx4B LINE L1 -5 7053 6625 7 650 612 321 93 77 chr1 8568460 8568933 -188626499 - L1M3 LINE L1 -3197 2946 2444 6 650 770 309 117 22 chr1 8569631 8569989 -188625443 + MTD LTR MaLR 14 405 -14 7 650 219 114 0 0 chr1 8570969 8571004 -188624428 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 650 460 352 67 0 chr1 8571470 8571663 -188623769 - B4 SINE B4 -71 221 16 7 650 5472 109 27 51 chr1 8571750 8572674 -188622758 + RLTR13D6 LTR ERVK 1 902 0 7 650 21 0 0 0 chr1 8574362 8574383 -188621049 + AT_rich Low_complexity Low_complexity 1 21 0 7 650 650 227 139 12 chr1 8574563 8574728 -188620704 + B3 SINE B2 2 187 -29 7 650 477 0 0 0 chr1 8574728 8574781 -188620651 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 650 432 0 0 0 chr1 8574781 8574828 -188620604 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 650 228 100 0 0 chr1 8575260 8575300 -188620132 + (A)n Simple_repeat Simple_repeat 1 40 0 8 650 1550 47 0 10 chr1 8575858 8576052 -188619380 - B2_Mm1a SINE B2 0 193 2 8 650 244 186 14 41 chr1 8576058 8576131 -188619301 + (TTTA)n Simple_repeat Simple_repeat 1 71 0 8 650 948 178 0 0 chr1 8576777 8576957 -188618475 + CT-rich Low_complexity Low_complexity 1 180 0 8 650 682 206 82 26 chr1 8577732 8577926 -188617506 + RLTR42-int LTR ERVK 1137 1341 -4181 8 650 521 167 19 10 chr1 8578050 8578153 -188617279 - L1_Mur3 LINE L1 -4480 1400 1297 8 650 2132 116 30 0 chr1 8578153 8578488 -188616944 - L1_Mus3 LINE L1 -1 6637 6293 8 650 595 244 47 0 chr1 8578492 8578619 -188616813 + ETnERV2-int LTR ERVK 7070 7202 -204 8 650 246 274 19 135 chr1 8578802 8579009 -188616423 + RNLTR23 LTR ERVK 460 642 0 8 650 5034 118 6 2 chr1 8579009 8580166 -188615266 - L1_Mus3 LINE L1 -344 6294 5136 8 650 1738 119 0 0 chr1 8580170 8580430 -188615002 + L1_Mur2 LINE L1 3954 4213 -1664 9 650 906 334 81 18 chr1 8580441 8580987 -188614445 - L1_Mur3 LINE L1 -6909 819 240 8 650 269 223 0 11 chr1 8581583 8581678 -188613754 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 9 650 334 209 73 58 chr1 8582556 8582693 -188612739 + L1MD2 LINE L1 5268 5406 -836 9 650 308 326 55 25 chr1 8583041 8583242 -188612190 + L1MD2 LINE L1 5845 6051 -308 9 650 739 164 0 93 chr1 8584061 8584222 -188611210 + B1_Mus1 SINE Alu 3 148 0 9 650 1224 232 9 28 chr1 8586278 8586381 -188609051 - Lx9 LINE L1 -27 7617 7522 9 650 381 43 0 0 chr1 8586381 8586428 -188609004 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 650 1224 232 9 28 chr1 8586428 8586648 -188608784 - Lx9 LINE L1 -123 7521 7300 9 650 2560 46 65 0 chr1 8586895 8587220 -188608212 + ORR1A1 LTR MaLR 1 346 0 9 650 234 0 0 0 chr1 8587906 8587932 -188607500 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 650 1455 38 5 5 chr1 8587934 8588145 -188607287 + (GGGAGA)n Simple_repeat Simple_repeat 1 211 0 9 650 1015 115 0 7 chr1 8588228 8588377 -188607055 + B1_Mus1 SINE Alu 1 148 0 9 650 1588 268 53 5 chr1 8588411 8588823 -188606609 + Lx9 LINE L1 6401 6832 -812 1 650 597 28 0 0 chr1 8588824 8588895 -188606537 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 650 11209 11 0 0 chr1 8588918 8590221 -188605211 - L1_Mm LINE L1 -1819 4064 2762 1 650 2771 7 0 0 chr1 8590218 8590527 -188604905 + L1Md_A LINE L1 5278 5586 -297 1 650 8781 15 0 0 chr1 8590527 8591523 -188603909 + L1Md_A LINE L1 5587 6582 0 1 650 21 71 0 0 chr1 8592554 8592596 -188602836 + AT_rich Low_complexity Low_complexity 1 42 0 1 650 1899 142 113 37 chr1 8593370 8593751 -188601681 + Lx3_Mus LINE L1 6598 7007 -2 1 650 6347 191 40 9 chr1 8594687 8596031 -188599401 + Lx5 LINE L1 5507 6898 -152 1 650 710 23 0 11 chr1 8596117 8596206 -188599226 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 1 650 21 36 0 0 chr1 8597300 8597328 -188598104 + AT_rich Low_complexity Low_complexity 1 28 0 1 650 743 71 23 16 chr1 8597458 8597587 -188597845 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 1 650 2842 109 64 0 chr1 8597648 8598021 -188597411 - L1_Mur1 LINE L1 -592 5294 4914 1 650 657 38 0 0 chr1 8598021 8598101 -188597331 + (CATA)n Simple_repeat Simple_repeat 2 81 0 1 650 2842 109 64 0 chr1 8598101 8598195 -188597237 - L1_Mur1 LINE L1 -973 4913 4798 1 650 11285 111 19 12 chr1 8598190 8599992 -188595440 - L1_Mur1 LINE L1 -2366 3520 1707 1 650 9295 96 32 8 chr1 8599992 8601827 -188593605 + Lx3_Mus LINE L1 5117 7009 0 1 650 578 336 7 0 chr1 8601882 8602031 -188593401 - B3 SINE B2 -60 156 7 1 650 812 239 18 97 chr1 8602584 8602811 -188592621 + B3 SINE B2 8 216 0 1 650 21 0 0 0 chr1 8603098 8603119 -188592313 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 21 36 0 0 chr1 8603411 8603439 -188591993 + AT_rich Low_complexity Low_complexity 1 28 0 1 650 5164 186 73 5 chr1 8603834 8605037 -188590395 + L1VL4 LINE L1 803 2063 -3823 1 650 204 67 0 0 chr1 8605037 8605067 -188590365 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 650 5164 180 89 3 chr1 8605067 8605433 -188589999 + L1VL4 LINE L1 2064 2445 -3441 1 650 933 296 175 29 chr1 8605434 8606290 -188589142 + Lx7 LINE L1 2909 3889 -1991 1 650 242 29 29 0 chr1 8606296 8606331 -188589101 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 650 1037 65 0 0 chr1 8606332 8606471 -188588961 - B1_Mus1 SINE Alu -1 147 9 1 650 591 15 0 0 chr1 8606481 8606549 -188588883 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 650 1946 319 50 23 chr1 8606550 8608312 -188587120 + Lx7 LINE L1 4959 6773 -923 1 650 1672 159 107 28 chr1 8608312 8608675 -188586757 + ORR1A3 LTR MaLR 3 394 0 1 650 2120 148 11 11 chr1 8608674 8609043 -188586389 + ORR1A3-int LTR MaLR 3 371 -1592 1 650 1744 117 63 87 chr1 8609043 8609409 -188586023 - Lx4A LINE L1 -935 4942 4586 1 650 7416 150 68 24 chr1 8609409 8611360 -188584072 + Lx4A LINE L1 4969 7055 -3 1 650 6191 170 75 87 chr1 8611394 8611628 -188583804 + ORR1A3-int LTR MaLR 350 576 -1216 1 650 916 137 224 70 chr1 8611628 8611856 -188583576 + MT2B LTR ERVL 25 287 -314 1 650 6191 170 75 87 chr1 8611856 8613105 -188582327 + ORR1A3-int LTR MaLR 577 1792 0 1 650 1762 159 35 6 chr1 8613105 8613422 -188582010 + ORR1A3 LTR MaLR 1 326 0 1 650 838 337 6 3 chr1 8613422 8613735 -188581697 + Lx7 LINE L1 6798 7111 -585 1 650 302 278 124 43 chr1 8613786 8613925 -188581507 + L1M4 LINE L1 5362 5499 -675 1 650 1147 69 0 0 chr1 8613925 8614070 -188581362 + B1_Mus2 SINE Alu 2 146 -1 1 650 302 282 127 41 chr1 8614070 8614347 -188581085 + L1M4 LINE L1 5500 5824 -356 1 650 228 86 0 0 chr1 8614388 8614423 -188581009 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 650 195 186 0 0 chr1 8614424 8614467 -188580965 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 650 2529 97 16 69 chr1 8615664 8616096 -188579336 + RLTR9E LTR ERVK 1 409 0 1 650 252 383 25 0 chr1 8616436 8616556 -188578876 + L1MDb LINE L1 663 785 -5624 1 650 324 321 78 21 chr1 8616705 8616896 -188578536 + L1MDb LINE L1 967 1168 -5241 1 650 250 269 43 0 chr1 8617047 8617140 -188578292 + L1MDb LINE L1 4008 4104 -2302 1 650 2338 294 74 15 chr1 8617199 8617981 -188577451 + RMER1B Other Other 61 888 -178 1 650 245 90 29 29 chr1 8618128 8618197 -188577235 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 1 650 260 246 45 110 chr1 8618209 8618364 -188577068 + RMER1B Other Other 919 1063 -3 1 650 8734 18 3 0 chr1 8618487 8620218 -188575214 - L1Md_A LINE L1 -1 6581 4845 1 650 2743 81 0 0 chr1 8620217 8620601 -188574831 + L1_Mus2 LINE L1 5688 6071 -495 1 650 429 20 0 0 chr1 8620672 8620722 -188574710 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 650 711 287 97 22 chr1 8620733 8621189 -188574243 - L1_Mur3 LINE L1 -1735 4145 3656 1 650 255 103 0 0 chr1 8621211 8621250 -188574182 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 650 252 0 0 0 chr1 8621394 8621422 -188574010 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 650 207 0 0 0 chr1 8621432 8621455 -188573977 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 650 548 269 24 30 chr1 8621862 8622017 -188573415 + MTD LTR MaLR 3 156 -263 1 650 1541 192 98 51 chr1 8622017 8622373 -188573059 + RLTR14 LTR ERV1 3 375 -7 1 650 616 336 66 16 chr1 8622380 8622622 -188572810 + MTD LTR MaLR 151 404 -15 1 650 924 95 150 0 chr1 8622694 8622841 -188572591 - L1Md_F2 LINE L1 -12 6570 6402 1 650 904 248 84 76 chr1 8622951 8623213 -188572219 + MT2A LTR ERVL 6 269 -264 1 650 368 133 0 48 chr1 8623206 8623269 -188572163 + MT2A LTR ERVL 410 469 -64 1 650 347 286 107 76 chr1 8623293 8623490 -188571942 - L1M2 LINE L1 -3258 2885 2683 1 650 231 250 0 0 chr1 8623568 8623632 -188571800 - L1M2 LINE L1 -3484 2659 2596 1 650 1387 264 86 130 chr1 8624152 8624689 -188570743 + RLTR22_Mur LTR ERVK 1 567 -1281 1 650 312 27 0 0 chr1 8624689 8624726 -188570706 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 650 1387 264 86 130 chr1 8624726 8625034 -188570398 + RLTR22_Mur LTR ERVK 568 808 -1040 1 650 36254 45 0 3 chr1 8625089 8631467 -188563965 - L1Md_T LINE L1 0 6585 125 1 650 225 0 0 0 chr1 8631505 8631530 -188563902 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 650 216 0 0 0 chr1 8631530 8631554 -188563878 + (T)n Simple_repeat Simple_repeat 1 24 0 1 650 1159 65 0 0 chr1 8631559 8631698 -188563734 - B1_Mus2 SINE Alu -8 139 1 1 650 1017 146 50 17 chr1 8632503 8632684 -188562748 + B2_Mm2 SINE B2 1 187 -8 1 650 508 26 143 0 chr1 8632890 8632967 -188562465 - L1Md_F3 LINE L1 -14 6570 6483 1 650 369 0 0 0 chr1 8633068 8633109 -188562323 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 650 731 277 62 0 chr1 8633139 8633334 -188562098 - B3 SINE B2 -5 211 5 1 650 186 103 0 0 chr1 8633430 8633459 -188561973 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 650 1166 98 5 75 chr1 8633459 8633647 -188561785 - B2_Mm1t SINE B2 -18 175 1 1 650 366 23 0 0 chr1 8633733 8633776 -188561656 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 1 650 216 0 0 0 chr1 8633776 8633800 -188561632 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 650 189 0 0 0 chr1 8634597 8634618 -188560814 + (A)n Simple_repeat Simple_repeat 1 21 0 1 650 360 298 172 42 chr1 8635009 8635514 -188559918 - L1M3 LINE L1 -512 5662 5092 1 650 502 261 27 14 chr1 8636193 8636414 -188559018 - L1M3 LINE L1 -1540 4600 4377 1 650 6162 80 20 2 chr1 8636908 8637813 -188557619 - L1Md_F2 LINE L1 0 6582 5699 1 650 2608 164 39 39 chr1 8637816 8638375 -188557057 - RLTR31_Mm LTR ERVK -2 559 1 1 650 445 371 62 39 chr1 8638969 8639227 -188556205 + B4A SINE B4 25 288 -4 1 650 23 33 0 0 chr1 8639716 8639746 -188555686 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 1018 260 138 16 chr1 8639927 8640286 -188555146 + MTD LTR MaLR 18 405 -14 1 650 21 0 0 0 chr1 8640289 8640310 -188555122 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 225 0 0 0 chr1 8640455 8640480 -188554952 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 650 21 36 0 0 chr1 8640690 8640718 -188554714 + AT_rich Low_complexity Low_complexity 1 28 0 1 650 369 0 0 0 chr1 8640719 8640760 -188554672 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 650 288 0 0 0 chr1 8640760 8640791 -188554641 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 650 1096 86 0 0 chr1 8641041 8641193 -188554239 - L1_Mus1 LINE L1 -1 6566 6415 1 650 23 33 0 0 chr1 8641274 8641304 -188554128 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 290 197 99 0 chr1 8641691 8641762 -188553670 + MTC LTR MaLR 1 78 -343 1 650 785 83 0 9 chr1 8641767 8641877 -188553555 + B1_Mus1 SINE Alu 40 148 0 1 650 346 288 58 73 chr1 8641894 8642085 -188553347 + L1M4 LINE L1 5105 5292 -854 1 650 279 0 0 0 chr1 8642374 8642405 -188553027 + (T)n Simple_repeat Simple_repeat 1 31 0 1 650 2290 133 22 16 chr1 8643023 8643389 -188552043 + RLTR9A LTR ERVK 1 368 0 1 650 409 17 0 62 chr1 8643578 8643642 -188551790 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 1 650 1529 230 46 16 chr1 8643682 8644049 -188551383 - RLTR1B LTR ERV1 0 512 135 1 650 32 0 0 0 chr1 8644542 8644574 -188550858 + AT_rich Low_complexity Low_complexity 1 32 0 1 650 230 360 140 0 chr1 8644602 8644702 -188550730 - B3A SINE B2 -27 171 58 1 650 1598 163 42 95 chr1 8644880 8645313 -188550119 + RMER17C LTR ERVK 1 410 0 1 650 254 360 73 15 chr1 8645413 8645619 -188549813 + Lx8 LINE L1 6873 7090 -383 1 650 311 314 129 25 chr1 8645711 8646037 -188549395 + Lx8 LINE L1 7108 7467 -6 1 650 237 282 14 0 chr1 8646380 8646451 -188548981 + GA-rich Low_complexity Low_complexity 3 74 0 1 650 2430 327 60 34 chr1 8646633 8648410 -188547022 + Lx8 LINE L1 5462 7326 -147 1 650 2122 113 30 21 chr1 8648436 8648770 -188546662 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 650 5551 60 13 18 chr1 8648772 8649547 -188545885 - IAPEz-int LTR ERVK -2 6479 5709 1 650 2955 22 0 0 chr1 8649538 8649895 -188545537 - IAPEz-int LTR ERVK -2124 4357 4001 1 650 368 89 0 0 chr1 8649893 8649949 -188545483 - IAPEz-int LTR ERVK -3707 2774 2719 1 81 17449 45 30 18 chr1 8649948 8652275 -188543157 - IAPEz-int LTR ERVK -4136 2345 3 1 651 2122 113 30 21 chr1 8652277 8652611 -188542821 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 651 979 272 153 16 chr1 8652645 8652959 -188542473 + MTD LTR MaLR 12 368 -51 1 651 495 0 0 0 chr1 8652959 8653014 -188542418 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 651 33498 50 4 9 chr1 8654189 8659384 -188536048 + L1Md_F2 LINE L1 422 5586 -297 1 651 8015 44 4 9 chr1 8659385 8660385 -188535047 + L1Md_F2 LINE L1 5588 6582 0 1 651 639 339 11 0 chr1 8660609 8660783 -188534649 + B3 SINE B2 11 186 -30 1 651 345 327 90 115 chr1 8660790 8661284 -188534148 + RLTR17 LTR ERVK 105 553 0 1 651 13850 78 2 1 chr1 8661810 8664461 -188530971 - L1Md_F2 LINE L1 -2 6580 3927 1 651 561 310 21 14 chr1 8664463 8664607 -188530825 - B1_Mur2 SINE Alu -2 147 3 1 651 278 182 0 15 chr1 8665281 8665348 -188530084 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1 651 306 0 0 0 chr1 8665352 8665386 -188530046 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 651 732 262 28 0 chr1 8666311 8666456 -188528976 + B1_Mur3 SINE Alu 1 149 0 1 651 297 68 0 0 chr1 8666469 8666513 -188528919 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 651 180 77 0 0 chr1 8667563 8667589 -188527843 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 651 662 179 0 7 chr1 8668481 8668616 -188526816 + (TA)n Simple_repeat Simple_repeat 2 135 0 2 651 23 33 0 0 chr1 8670187 8670217 -188525215 + AT_rich Low_complexity Low_complexity 1 30 0 2 651 933 121 70 75 chr1 8671560 8671747 -188523685 + B2_Mm2 SINE B2 2 187 -8 2 651 699 35 0 0 chr1 8671747 8671833 -188523599 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 2 651 189 74 0 0 chr1 8672432 8672459 -188522973 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 651 2739 106 152 0 chr1 8672540 8673002 -188522430 - RLTR47_MM LTR ERV1 0 532 1 2 651 737 319 29 13 chr1 8673120 8673504 -188521928 - MuRRS4-int LTR ERV1 -130 4933 4544 2 651 1703 281 37 21 chr1 8673795 8674638 -188520794 - MuRRS4-int LTR ERV1 -1049 4014 3533 2 651 251 372 21 16 chr1 8675184 8675375 -188520057 - MuLV-int LTR ERV1 -3424 4182 3991 2 651 932 327 43 37 chr1 8675520 8676588 -188518844 - MuRRS4-int LTR ERV1 -5330 2271 1098 2 651 511 168 129 26 chr1 8677225 8677341 -188518091 - RLTR47_MM LTR ERV1 -6 526 399 2 651 330 162 14 14 chr1 8677355 8677424 -188518008 - RMER6B LTR ERVK -392 69 1 2 651 3819 151 32 74 chr1 8677529 8678343 -188517089 + L1VL2 LINE L1 162 941 -5394 2 651 36775 9 0 1 chr1 8678344 8684343 -188511089 + L1Md_A LINE L1 1 5586 -297 2 651 9039 4 0 0 chr1 8684343 8685339 -188510093 + L1Md_A LINE L1 5587 6582 0 2 651 304 77 0 0 chr1 8685342 8685394 -188510038 + MusHAL1 LINE L1 683 734 -2620 2 651 13269 163 11 67 chr1 8685391 8687136 -188508296 + L1_Mus3 LINE L1 3070 4839 -1038 2 651 2272 124 12 73 chr1 8687136 8687544 -188507888 + RLTR9A2 LTR ERVK 1 383 0 2 651 13269 128 19 41 chr1 8687544 8687621 -188507811 + L1_Mus3 LINE L1 4840 4914 -1724 2 651 322 194 101 55 chr1 8687621 8687632 -188507800 + MT2B LTR ERVL 152 167 -434 2 651 880 76 106 0 chr1 8687632 8687764 -188507668 + B1_Mm SINE Alu 2 147 0 2 651 13269 128 19 41 chr1 8687764 8689512 -188505920 + L1_Mus3 LINE L1 4915 6631 -7 2 651 303 312 56 21 chr1 8689519 8689663 -188505769 - L1M4 LINE L1 -1575 4571 4423 2 651 14531 23 0 0 chr1 8689775 8692231 -188503201 - L1Md_A LINE L1 0 6582 4127 2 651 879 142 27 18 chr1 8693449 8693782 -188501650 + CT-rich Low_complexity Low_complexity 1 336 0 2 651 216 97 0 0 chr1 8694039 8694070 -188501362 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2 651 2704 272 82 33 chr1 8694405 8696418 -188499014 + L1_Rod LINE L1 901 3022 -2825 2 651 1064 116 0 0 chr1 8696418 8696565 -188498867 + B1_Mus1 SINE Alu 2 148 0 2 651 2704 273 95 35 chr1 8696565 8696659 -188498773 + L1_Rod LINE L1 3023 3119 -2728 2 651 19078 104 9 22 chr1 8696664 8700580 -188494852 + L1_Mus1 LINE L1 423 4286 -1597 2 651 32539 84 3 11 chr1 8700591 8702436 -188492996 + L1Md_A LINE L1 301 2128 -3755 2 651 3052 17 100 0 chr1 8702436 8702796 -188492636 + MTA_Mm LTR MaLR 1 396 0 2 651 9496 19 4 0 chr1 8702796 8703890 -188491542 + MTA_Mm-int LTR MaLR 1 1098 0 2 651 2936 33 100 0 chr1 8703890 8704250 -188491182 + MTA_Mm LTR MaLR 1 396 0 2 651 32539 49 5 2 chr1 8704250 8704910 -188490522 + L1Md_A LINE L1 2129 2781 -3102 2 651 243 0 0 0 chr1 8704910 8704937 -188490495 + (CATAA)n Simple_repeat Simple_repeat 1 27 0 2 651 32539 49 5 2 chr1 8704937 8707718 -188487714 + L1Md_A LINE L1 2782 5583 -300 2 651 8808 14 1 0 chr1 8707718 8708713 -188486719 + L1Md_A LINE L1 5587 6582 0 2 651 10639 57 2 0 chr1 8708719 8710136 -188485296 + L1Md_F2 LINE L1 4166 5585 -298 2 651 7627 52 19 7 chr1 8710137 8711121 -188484311 + L1Md_F2 LINE L1 5587 6582 0 2 651 8883 106 25 11 chr1 8711121 8713217 -188482215 + L1_Mus1 LINE L1 4446 6566 -1 2 651 1825 293 49 73 chr1 8713201 8713770 -188481662 + L1_Rod LINE L1 3096 3655 -2192 2 651 666 47 0 0 chr1 8713770 8713856 -188481576 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 651 1825 293 49 73 chr1 8713856 8714663 -188480769 + L1_Rod LINE L1 3656 4439 -1408 2 651 695 251 155 20 chr1 8714666 8715073 -188480359 + L1_Rod LINE L1 4656 5117 -730 2 651 1918 33 0 0 chr1 8715207 8715448 -188479984 - L1_Mm LINE L1 -1282 4601 4361 2 651 3256 34 5 2 chr1 8715447 8715882 -188479550 + L1Md_F3 LINE L1 5937 6438 -146 2 651 28705 77 65 2 chr1 8715874 8720451 -188474981 - L1Md_F2 LINE L1 -529 6053 1174 2 651 7456 60 1 0 chr1 8720451 8721585 -188473847 - L1Md_F2 LINE L1 0 6582 5495 2 651 6356 34 0 0 chr1 8721583 8722345 -188473087 + L1Md_F2 LINE L1 4744 5505 -378 2 651 4130 189 35 14 chr1 8722358 8723291 -188472141 - L1Md_F2 LINE L1 -5534 1190 238 2 651 238 306 47 0 chr1 8723322 8723407 -188472025 + Lx9 LINE L1 7341 7429 -215 2 651 601 330 57 11 chr1 8724137 8724416 -188471016 + B4A SINE B4 1 292 0 2 651 2420 148 56 18 chr1 8724623 8725070 -188470362 + RMER4A LTR ERVK 3 466 0 2 651 604 188 0 18 chr1 8725074 8725188 -188470244 + RMER4A LTR ERVK 320 431 -35 2 651 276 30 0 0 chr1 8725199 8725232 -188470200 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 651 246 263 39 48 chr1 8726300 8726404 -188469028 + MT2A LTR ERVL 1 103 -430 2 651 819 304 124 29 chr1 8726329 8726644 -188468788 + MTD LTR MaLR 60 404 -17 2 651 262 320 55 16 chr1 8726683 8726940 -188468492 + Lx9 LINE L1 1326 1592 -4288 2 651 708 168 42 35 chr1 8727234 8727376 -188468056 + B1_Mur4 SINE Alu 7 149 -1 2 651 293 43 0 42 chr1 8727416 8727464 -188467968 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 2 651 1144 300 121 30 chr1 8727464 8727661 -188467771 + Lx9 LINE L1 2000 2216 -3664 2 651 180 0 0 0 chr1 8727661 8727681 -188467751 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 651 1144 300 121 30 chr1 8727681 8727841 -188467591 + Lx9 LINE L1 2217 2380 -3500 2 651 1078 199 18 0 chr1 8727841 8728062 -188467370 + URR1A DNA MER1_type 1 225 -1 2 651 1144 300 121 30 chr1 8728062 8728445 -188466987 + Lx9 LINE L1 2381 2809 -3071 2 651 923 282 85 100 chr1 8728466 8729169 -188466263 + Lx9 LINE L1 3904 4591 -1289 2 651 1740 314 98 39 chr1 8729235 8730416 -188465016 + Lx9 LINE L1 5633 6883 -761 2 651 475 260 59 34 chr1 8730410 8730631 -188464801 + L1_Mur2 LINE L1 4676 4910 -970 2 651 8467 111 14 3 chr1 8730635 8732706 -188462726 + L1_Mus3 LINE L1 4540 6631 -7 2 651 249 344 32 8 chr1 8733442 8733565 -188461867 + MER2 DNA MER2_type 127 252 -93 2 651 372 306 84 54 chr1 8733661 8733827 -188461605 - Tigger5 DNA MER2_type -2164 242 72 2 651 4326 66 2 23 chr1 8733923 8734499 -188460933 + LTRIS2 LTR ERV1 1 564 0 2 651 3046 125 154 39 chr1 8735238 8735574 -188459858 - RMER17A LTR ERVK 0 751 363 2 651 1107 98 0 0 chr1 8735574 8735737 -188459695 + (GGAGA)n Simple_repeat Simple_repeat 1 163 0 2 651 3046 125 154 39 chr1 8735737 8736073 -188459359 - RMER17A LTR ERVK -389 362 1 2 651 355 299 250 0 chr1 8736254 8736398 -188459034 - Lx8 LINE L1 -1089 6384 6205 2 651 393 75 0 0 chr1 8736620 8736673 -188458759 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 651 631 320 167 42 chr1 8736785 8737396 -188458036 - Lx8 LINE L1 -1 5846 5109 2 651 1342 64 5 5 chr1 8737396 8737584 -188457848 - L1Md_F3 LINE L1 0 6584 6397 2 651 631 320 167 42 chr1 8737584 8737919 -188457513 - Lx8 LINE L1 -739 5108 4782 2 651 638 101 9 18 chr1 8738002 8738113 -188457319 - Lx2 LINE L1 0 6997 6888 2 651 195 42 0 0 chr1 8738135 8738159 -188457273 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 651 27 0 0 0 chr1 8738208 8738235 -188457197 + AT_rich Low_complexity Low_complexity 1 27 0 2 651 12404 114 13 19 chr1 8738235 8740423 -188455009 - L1VL2 LINE L1 -626 2989 818 2 651 1069 113 6 6 chr1 8740423 8740601 -188454831 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 651 474 157 0 0 chr1 8740615 8740698 -188454734 + CT-rich Low_complexity Low_complexity 3 85 0 2 651 24026 135 8 11 chr1 8740703 8745555 -188449877 - L1_Mus3 LINE L1 0 6638 1803 2 651 5332 87 50 91 chr1 8745555 8746481 -188448951 + RLTR13D4 LTR ERVK 1 871 -162 2 651 2726 130 9 0 chr1 8746481 8746903 -188448529 - L1VL2 LINE L1 -5572 763 338 2 651 647 235 182 5 chr1 8747074 8747288 -188448144 - Lx4B LINE L1 -2 7056 6748 2 651 2516 46 80 67 chr1 8747288 8747514 -188447918 + RLTR13C2 LTR ERVK 1 244 -564 2 651 1294 111 16 0 chr1 8747514 8747703 -188447729 - B2_Mm2 SINE B2 -3 192 1 2 651 2516 46 80 67 chr1 8747703 8747851 -188447581 + RLTR13C2 LTR ERVK 245 380 -428 2 651 1107 266 47 41 chr1 8747851 8748216 -188447216 - Lx4B LINE L1 -668 6390 6024 2 651 251 116 0 3 chr1 8748217 8748258 -188447174 - L1_Mur3 LINE L1 -871 5272 5206 2 651 225 132 0 0 chr1 8748393 8748431 -188447001 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 651 843 308 85 43 chr1 8748435 8748522 -188446910 - L1_Mur3 LINE L1 -1507 4370 4276 2 651 3878 135 3 0 chr1 8748522 8749100 -188446332 + MT2B2 LTR ERVL 1 580 -4 2 651 843 307 84 44 chr1 8749100 8749818 -188445614 - L1_Mur3 LINE L1 -1600 4280 3527 2 651 4939 263 86 43 chr1 8749830 8752047 -188443385 - Lx5 LINE L1 0 7050 4730 2 651 420 20 0 0 chr1 8752047 8752096 -188443336 + (TTG)n Simple_repeat Simple_repeat 3 51 0 2 651 4939 220 87 20 chr1 8752096 8752399 -188443033 - Lx5 LINE L1 -1151 4729 4408 2 651 1729 178 9 3 chr1 8752402 8752734 -188442698 + Lx7 LINE L1 4806 5139 -741 2 651 693 262 92 46 chr1 8752732 8753036 -188442396 + Lx7 LINE L1 5853 6170 -1526 2 651 478 245 0 0 chr1 8753027 8753129 -188442303 + Lx6 LINE L1 6250 6351 -1109 2 651 1377 51 0 0 chr1 8753147 8753177 -188442255 + (GAA)n Simple_repeat Simple_repeat 3 32 0 2 651 1413 51 0 0 chr1 8753177 8753355 -188442077 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 651 1377 51 0 0 chr1 8753355 8753500 -188441932 + (GAA)n Simple_repeat Simple_repeat 3 147 0 2 651 522 0 0 0 chr1 8753500 8753558 -188441874 + (GGA)n Simple_repeat Simple_repeat 2 59 0 2 651 1371 62 0 0 chr1 8753558 8753736 -188441696 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2 651 237 65 0 0 chr1 8753874 8753905 -188441527 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 651 549 316 48 19 chr1 8754320 8754530 -188440902 - RMER15 LTR ERVL -64 511 296 2 651 709 146 28 0 chr1 8754850 8754994 -188440438 + CT-rich Low_complexity Low_complexity 1 148 0 2 651 587 263 38 0 chr1 8754994 8755127 -188440305 - B1_Mus1 SINE Alu -1 147 10 2 651 22670 88 11 6 chr1 8756618 8759928 -188435504 + L1_Mm LINE L1 1363 4690 -1193 2 651 6147 71 12 2 chr1 8759928 8760728 -188434704 + RLTR13C2 LTR ERVK 1 808 0 2 651 854 196 28 11 chr1 8760731 8760912 -188434520 + ETnERV3-int LTR ERVK 3 186 -5622 2 651 10393 131 78 47 chr1 8761086 8764169 -188431263 + ETnERV2-int LTR ERVK 175 4267 -2977 2 651 4547 150 14 36 chr1 8764177 8765039 -188430393 + ETnERV2-int LTR ERVK 4423 5963 -1281 2 651 23 0 0 0 chr1 8765058 8765081 -188430351 + AT_rich Low_complexity Low_complexity 1 23 0 2 651 1497 153 12 0 chr1 8765139 8765380 -188430052 + ETnERV3-int LTR ERVK 5537 5780 -28 2 651 5834 74 4 1 chr1 8765391 8766164 -188429268 + RLTR13C2 LTR ERVK 1 775 -33 2 651 4831 111 63 65 chr1 8766164 8766634 -188428798 + L1Md_F2 LINE L1 4686 5173 -710 2 651 308 27 0 0 chr1 8766634 8766671 -188428761 - U6 snRNA snRNA -70 37 1 2 651 4831 111 63 65 chr1 8766671 8767067 -188428365 + L1Md_F2 LINE L1 5174 5586 -297 2 651 7420 74 6 2 chr1 8767068 8768047 -188427385 + L1Md_F2 LINE L1 5588 6570 -12 2 651 652 269 191 24 chr1 8768048 8768720 -188426712 + L1M3 LINE L1 4000 4783 -1360 2 651 844 263 148 116 chr1 8768821 8769024 -188426408 - MTD LTR MaLR 0 419 193 2 651 480 176 0 30 chr1 8769024 8769159 -188426273 - Lx9 LINE L1 -1 7643 7513 2 651 227 79 26 0 chr1 8769161 8769199 -188426233 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 651 844 263 148 116 chr1 8769199 8769397 -188426035 - MTD LTR MaLR -227 192 2 2 651 342 351 100 26 chr1 8769397 8769623 -188425809 - ORR1E LTR MaLR -34 325 83 2 651 2002 70 0 4 chr1 8770189 8770462 -188424970 - L1_Mus4 LINE L1 -5 6631 6360 2 651 3155 84 7 0 chr1 8770464 8770878 -188424554 + L1_Mus4 LINE L1 5955 6371 -265 2 651 401 312 145 57 chr1 8771080 8771556 -188423876 - L1M5 LINE L1 -1759 4387 3870 2 651 216 0 0 0 chr1 8773456 8773480 -188421952 + (T)n Simple_repeat Simple_repeat 1 24 0 2 651 4604 79 3 0 chr1 8773795 8774403 -188421029 - L1Md_F2 LINE L1 -356 6226 5617 3 651 270 253 75 83 chr1 8774493 8774690 -188420742 - Lx7 LINE L1 0 7696 7497 3 651 369 62 0 0 chr1 8774690 8774738 -188420694 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 651 270 253 75 83 chr1 8774738 8774794 -188420638 - Lx7 LINE L1 -200 7496 7445 3 651 2064 194 19 5 chr1 8774794 8775172 -188420260 + Lx2B LINE L1 6613 6995 -5 3 651 2203 72 29 199 chr1 8775172 8775650 -188419782 + L1Md_F2 LINE L1 6171 6567 -15 3 651 1277 173 61 8 chr1 8775714 8775959 -188419473 + MTC LTR MaLR 1 258 -163 3 651 865 350 46 66 chr1 8776097 8776657 -188418775 - Lx9 LINE L1 -653 6991 6443 3 651 301 230 126 0 chr1 8776677 8776764 -188418668 + L1M2 LINE L1 5551 5648 -664 3 651 2734 28 6 33 chr1 8776764 8777100 -188418332 + IAPLTR2b LTR ERVK 1 327 0 3 651 919 123 40 109 chr1 8777101 8777302 -188418130 + IAPEz-int LTR ERVK 9 195 -6286 3 651 225 255 20 0 chr1 8777302 8777353 -188418079 + RLTR27 LTR ERVK 223 274 -35 3 651 10035 85 43 42 chr1 8777355 8779255 -188416177 + IAPEz-int LTR ERVK 94 1700 -4781 3 651 6105 56 11 18 chr1 8779248 8780083 -188415349 + IAPEz-int LTR ERVK 5651 6479 -2 3 651 2816 15 6 33 chr1 8780085 8780421 -188415011 + IAPLTR2b LTR ERVK 1 327 0 3 651 708 239 33 13 chr1 8780469 8780761 -188414671 + Lx9 LINE L1 5643 5967 -1677 3 651 244 283 38 98 chr1 8780939 8781072 -188414360 - RMER12 LTR ERVK -478 844 720 3 652 22 0 0 0 chr1 8782401 8782423 -188413009 + AT_rich Low_complexity Low_complexity 1 22 0 3 652 877 272 13 0 chr1 8782423 8782662 -188412770 - Lx7 LINE L1 -800 6896 6655 3 652 939 280 48 11 chr1 8782670 8783049 -188412383 - L1_Mur3 LINE L1 -3704 2176 1784 3 652 7079 93 15 2 chr1 8783048 8784981 -188410451 + L1_Mus1 LINE L1 4743 6567 0 3 652 579 229 102 16 chr1 8784981 8785044 -188410388 - L1_Mur3 LINE L1 -4111 1769 1706 3 652 216 0 0 0 chr1 8785044 8785068 -188410364 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 652 579 229 102 16 chr1 8785068 8785248 -188410184 - L1_Mur3 LINE L1 -4175 1705 1506 3 652 3084 253 60 21 chr1 8785346 8786356 -188409076 + Lx9 LINE L1 6593 7642 -2 3 652 344 376 111 0 chr1 8786479 8786668 -188408764 - B3 SINE B2 -6 210 1 3 652 3369 38 2 0 chr1 8787684 8788079 -188407353 + MTA_Mm LTR MaLR 1 396 0 3 652 9138 33 5 2 chr1 8788079 8789174 -188406258 + MTA_Mm-int LTR MaLR 1 1098 0 3 652 3422 30 2 0 chr1 8789174 8789569 -188405863 + MTA_Mm LTR MaLR 1 396 0 3 652 271 260 0 13 chr1 8789590 8789668 -188405764 + Lx6 LINE L1 563 639 -7089 3 652 3388 173 40 130 chr1 8789735 8790330 -188405102 + Lx6 LINE L1 2398 3000 -2880 3 652 450 0 0 0 chr1 8790330 8790380 -188405052 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 3 652 3388 173 40 130 chr1 8790380 8790821 -188404611 + Lx6 LINE L1 3001 3337 -2543 3 652 1623 125 50 143 chr1 8790821 8791184 -188404248 + ORR1A4 LTR MaLR 1 329 0 3 652 3388 173 40 130 chr1 8791184 8791332 -188404100 + Lx6 LINE L1 3338 3476 -2404 3 652 2890 243 64 21 chr1 8791327 8792619 -188402813 + Lx6 LINE L1 5273 6637 -823 3 652 596 217 101 6 chr1 8792646 8792804 -188402628 + Lx6 LINE L1 7273 7445 -15 3 652 1067 222 49 0 chr1 8794691 8794934 -188400498 - Lx5 LINE L1 -3 7047 6793 3 652 317 297 145 26 chr1 8795502 8795654 -188399778 + HAL1-3A_ME LINE L1 2275 2444 -414 3 652 604 306 6 29 chr1 8795663 8795838 -188399594 + B4A SINE B4 116 286 -6 3 652 1114 239 73 0 chr1 8796093 8796352 -188399080 - Lx6 LINE L1 -994 6466 6189 3 652 7980 198 75 12 chr1 8796489 8798554 -188396878 - L1_Mur3 LINE L1 -1279 4601 2405 3 652 4348 138 46 4 chr1 8798549 8798957 -188396475 - L1_Mur2 LINE L1 -814 5063 4626 3 652 327 49 0 0 chr1 8798957 8798998 -188396434 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 652 4348 138 46 4 chr1 8798998 8799370 -188396062 - L1_Mur2 LINE L1 -1252 4625 4251 3 652 4303 192 17 10 chr1 8799370 8800206 -188395226 + Lx2B LINE L1 6158 6999 -1 3 652 684 168 73 18 chr1 8800210 8800374 -188395058 - L1_Mur3 LINE L1 -3469 2411 2239 3 652 3380 238 87 19 chr1 8800375 8801401 -188394031 - L1_Mur3 LINE L1 -6597 1131 37 3 652 317 329 45 8 chr1 8801679 8801924 -188393508 - L1MC3 LINE L1 -100 7685 7432 3 652 429 309 37 25 chr1 8802240 8802305 -188393127 + ERVL-B4-int LTR ERVL 2679 2748 -2966 3 652 367 39 0 0 chr1 8802305 8802356 -188393076 + L1_Mus2 LINE L1 6515 6565 -1 3 652 429 315 36 20 chr1 8802356 8802569 -188392863 + ERVL-B4-int LTR ERVL 2748 2923 -2791 3 652 363 73 0 0 chr1 8802604 8802659 -188392773 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 652 473 165 12 0 chr1 8802690 8802775 -188392657 - URR1B DNA MER1_type -11 214 129 3 652 453 313 117 22 chr1 8802943 8803309 -188392123 + ERVL-B4-int LTR ERVL 3393 3808 -1677 3 652 393 176 0 0 chr1 8803441 8803515 -188391917 + GA-rich Low_complexity Low_complexity 2 75 0 3 652 412 311 0 0 chr1 8803706 8803809 -188391623 + RSINE1 SINE B4 3 105 -60 3 652 25 0 0 0 chr1 8803847 8803872 -188391560 + AT_rich Low_complexity Low_complexity 1 25 0 3 652 283 270 17 13 chr1 8803886 8803999 -188391433 + MLT2C1 LTR ERVL 443 556 -3 3 652 222 259 185 0 chr1 8805020 8805074 -188390358 - B1F SINE Alu -85 64 1 3 652 576 0 0 0 chr1 8805743 8805807 -188389625 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 652 471 280 93 44 chr1 8806707 8806721 -188388711 - B3 SINE B2 -24 192 180 3 652 297 0 0 0 chr1 8806721 8806754 -188388678 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 652 500 280 93 44 chr1 8806754 8806922 -188388510 - B3A SINE B2 -37 179 1 3 652 3145 48 8 2 chr1 8807295 8807689 -188387743 + MTA_Mm LTR MaLR 1 396 0 3 652 630 0 0 0 chr1 8807924 8807994 -188387438 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 652 1040 337 67 42 chr1 8808476 8808819 -188386613 + Lx8 LINE L1 6494 6838 -635 3 652 4269 119 64 27 chr1 8808819 8809599 -188385833 - RMER17D2 LTR ERVK 0 809 1 3 652 1040 337 67 42 chr1 8809599 8810020 -188385412 + Lx8 LINE L1 6839 7277 -196 3 652 23 0 0 0 chr1 8810163 8810186 -188385246 + AT_rich Low_complexity Low_complexity 1 23 0 3 652 324 0 0 0 chr1 8810441 8810477 -188384955 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 652 442 306 7 50 chr1 8810732 8810873 -188384559 - RMER1C Other Other -712 630 496 3 652 339 305 51 38 chr1 8811163 8811320 -188384112 - RMER1C Other Other -1156 186 28 3 652 186 365 48 0 chr1 8813122 8813226 -188382206 - MIRb SINE MIR -80 188 80 3 652 275 311 37 29 chr1 8813724 8813860 -188381572 + RMER1C Other Other 375 511 -831 3 652 1186 228 60 38 chr1 8813851 8814221 -188381211 + RMER1C Other Other 925 1302 -40 3 652 11323 149 28 4 chr1 8814230 8816119 -188379313 - Lx LINE L1 -8 6646 4738 3 652 356 0 0 22 chr1 8816119 8816164 -188379268 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 652 11323 162 54 10 chr1 8816164 8817327 -188378105 - Lx LINE L1 -1146 4737 3486 3 652 405 0 0 0 chr1 8817327 8817372 -188378060 + (TTG)n Simple_repeat Simple_repeat 1 45 0 3 652 31692 87 17 2 chr1 8817380 8823567 -188371865 - L1Md_F2 LINE L1 0 6582 311 3 652 1836 131 12 0 chr1 8823576 8823897 -188371535 - MusHAL1 LINE L1 -2074 638 314 3 652 1095 149 185 74 chr1 8823895 8824193 -188371239 + Lx LINE L1 6323 6653 -1 3 652 2701 200 30 17 chr1 8824204 8824897 -188370535 + L1_Mur3 LINE L1 1336 2037 -3843 3 652 749 296 56 45 chr1 8824883 8825474 -188369958 + Lx5 LINE L1 5931 6737 -723 3 652 429 20 0 0 chr1 8825481 8825531 -188369901 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 652 660 321 12 0 chr1 8825538 8825700 -188369732 + B3A SINE B2 26 189 -9 3 652 4068 107 37 104 chr1 8826373 8826699 -188368733 + L1_Mur1 LINE L1 4776 5113 -773 3 652 1032 63 7 0 chr1 8826699 8826841 -188368591 + L1_Mus2 LINE L1 6423 6565 -1 3 652 4068 107 37 104 chr1 8826841 8827372 -188368060 + L1_Mur1 LINE L1 5114 5576 -310 3 652 574 190 120 0 chr1 8827348 8827490 -188367942 + Lx3A LINE L1 6823 6981 0 3 652 1968 100 6 48 chr1 8827559 8827643 -188367789 + L1_Mur1 LINE L1 5559 5640 -246 3 652 1639 11 0 25 chr1 8827643 8827840 -188367592 + B2_Mm1a SINE B2 2 193 0 3 652 1968 100 6 48 chr1 8827840 8828091 -188367341 + L1_Mur1 LINE L1 5641 5880 -6 3 652 1244 105 0 0 chr1 8828089 8828270 -188367162 + Lx3A LINE L1 6509 6689 -292 3 652 1079 140 5 0 chr1 8828268 8828468 -188366964 - L1_Mm LINE L1 -4291 1592 1392 3 652 2196 68 0 0 chr1 8828465 8828758 -188366674 + L1Md_F2 LINE L1 5293 5585 -298 3 652 7269 83 7 6 chr1 8828759 8829742 -188365690 + L1Md_F2 LINE L1 5587 6570 -12 3 652 769 102 8 8 chr1 8830478 8830533 -188364899 + (TTC)n Simple_repeat Simple_repeat 1 55 0 3 652 1347 72 0 0 chr1 8830533 8830713 -188364719 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 652 769 102 8 8 chr1 8830713 8830754 -188364678 + (TTC)n Simple_repeat Simple_repeat 1 42 0 3 652 989 111 23 0 chr1 8830754 8830926 -188364506 + (TCC)n Simple_repeat Simple_repeat 3 178 0 3 652 769 102 8 8 chr1 8830926 8830957 -188364475 + (TTC)n Simple_repeat Simple_repeat 3 33 0 3 652 1178 273 44 10 chr1 8831062 8831469 -188363963 + Lx9 LINE L1 7076 7496 -148 3 652 31 0 0 0 chr1 8831717 8831748 -188363684 + AT_rich Low_complexity Low_complexity 1 31 0 3 652 234 0 0 0 chr1 8833377 8833403 -188362029 + (A)n Simple_repeat Simple_repeat 1 26 0 3 652 3249 101 0 9 chr1 8833596 8834058 -188361374 - L1_Mus1 LINE L1 -929 4954 4497 3 652 7095 86 3 0 chr1 8834054 8835589 -188359843 + L1_Mus1 LINE L1 4933 6473 -94 3 652 2194 119 218 26 chr1 8835698 8836157 -188359275 + RLTR6_Mm LTR ERV1 37 583 -71 3 652 536 103 0 10 chr1 8836157 8836255 -188359177 + L1_Mus1 LINE L1 6469 6565 -2 3 652 294 29 0 0 chr1 8838238 8838273 -188357159 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 652 1002 121 0 0 chr1 8838275 8838432 -188357000 + (GAA)n Simple_repeat Simple_repeat 1 157 0 3 652 924 91 0 0 chr1 8838432 8838563 -188356869 + (GGGAA)n Simple_repeat Simple_repeat 1 132 0 3 652 4749 51 3 2 chr1 8839293 8839879 -188355553 - LTRIS_Mus LTR ERV1 0 587 1 3 652 2801 283 60 14 chr1 8840041 8840940 -188354492 - RCHARR1 DNA MER1_type 0 974 35 3 652 660 194 0 0 chr1 8841802 8841936 -188353496 + GA-rich Low_complexity Low_complexity 2 135 0 3 652 1517 321 35 63 chr1 8842037 8842553 -188352879 + Lx8 LINE L1 6712 7234 -239 3 652 2432 37 0 0 chr1 8842553 8842847 -188352585 + L1Md_A LINE L1 6289 6582 0 3 652 1517 321 35 63 chr1 8842847 8843107 -188352325 + Lx8 LINE L1 7235 7466 -7 3 652 487 316 58 13 chr1 8843496 8843650 -188351782 + RSINE1 SINE B4 3 163 -2 3 652 180 77 0 0 chr1 8844340 8844366 -188351066 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 3 652 1294 150 8 17 chr1 8844789 8845027 -188350405 - Lx LINE L1 -1 6653 6418 3 652 1236 124 0 0 chr1 8845027 8845212 -188350220 - L1_Mm LINE L1 -411 5472 5288 3 652 450 198 23 45 chr1 8846351 8846483 -188348949 - L1_Mm LINE L1 -575 5308 5180 3 652 23 43 0 21 chr1 8846593 8846605 -188348827 + AT_rich Low_complexity Low_complexity 1 12 0 3 652 411 73 0 0 chr1 8846605 8846660 -188348772 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 652 23 43 0 21 chr1 8846660 8846695 -188348737 + AT_rich Low_complexity Low_complexity 1 35 0 3 652 442 165 0 23 chr1 8846751 8846838 -188348594 + L1_Mm LINE L1 5224 5308 -575 3 652 23 0 0 0 chr1 8847500 8847523 -188347909 + AT_rich Low_complexity Low_complexity 1 23 0 3 652 24 53 0 0 chr1 8847868 8847906 -188347526 + AT_rich Low_complexity Low_complexity 1 38 0 3 652 25 0 0 0 chr1 8848573 8848598 -188346834 + AT_rich Low_complexity Low_complexity 1 25 0 3 652 26 0 0 0 chr1 8848961 8848987 -188346445 + AT_rich Low_complexity Low_complexity 1 26 0 3 652 694 301 74 87 chr1 8849180 8849375 -188346057 + RLTR26 LTR ERVK 5 203 -439 3 652 3546 82 8 12 chr1 8849375 8849879 -188345553 + RLTR44C LTR ERVK 1 502 0 4 652 694 301 74 87 chr1 8849879 8850076 -188345356 + RLTR26 LTR ERVK 204 392 -250 3 652 501 241 102 0 chr1 8850708 8850816 -188344616 + RSINE1 SINE B4 3 121 -44 4 652 351 0 0 0 chr1 8850822 8850861 -188344571 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 652 318 365 34 7 chr1 8851510 8851659 -188343773 - MLT1E1 LTR MaLR 0 654 502 4 652 1237 258 156 3 chr1 8852951 8853309 -188342123 + MTD LTR MaLR 6 418 -1 4 652 190 284 49 0 chr1 8853334 8853415 -188342017 - MIR SINE MIR -75 187 103 4 652 441 0 0 138 chr1 8853879 8854075 -188341357 + (CTG)n Simple_repeat Simple_repeat 1 169 0 4 652 3175 89 2 0 chr1 8854436 8854862 -188340570 - L1_Mm LINE L1 -682 5201 4775 4 652 998 269 147 3 chr1 8854966 8855279 -188340153 + Lx6 LINE L1 6991 7348 -112 4 652 495 0 0 0 chr1 8855279 8855334 -188340098 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 652 315 0 0 0 chr1 8855334 8855368 -188340064 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 652 21 82 0 0 chr1 8855390 8855439 -188339993 + AT_rich Low_complexity Low_complexity 1 49 0 4 652 567 78 0 0 chr1 8855754 8855831 -188339601 + (TAA)n Simple_repeat Simple_repeat 2 78 0 4 652 432 0 0 0 chr1 8855966 8856014 -188339418 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 652 712 312 82 46 chr1 8856427 8856686 -188338746 + B4 SINE B4 1 274 -18 4 652 357 24 0 0 chr1 8856686 8856728 -188338704 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 652 712 312 82 46 chr1 8856728 8856750 -188338682 + B4 SINE B4 275 292 0 4 652 5134 187 40 39 chr1 8857371 8857768 -188337664 + Lx6 LINE L1 4647 5044 -836 4 652 3867 168 80 10 chr1 8857768 8858454 -188336978 - RMER19A LTR ERVK -3 734 1 4 652 6404 187 40 39 chr1 8858454 8859204 -188336228 + Lx6 LINE L1 5045 5798 -1662 4 652 477 0 0 0 chr1 8859204 8859257 -188336175 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 652 6404 251 44 30 chr1 8859257 8859942 -188335490 + Lx6 LINE L1 5799 6471 -989 4 652 1055 85 7 0 chr1 8859942 8860083 -188335349 + B1_Mus1 SINE Alu 1 142 -6 4 652 6404 251 44 30 chr1 8860083 8860569 -188334863 + Lx6 LINE L1 6472 6966 -494 4 652 495 0 0 0 chr1 8860569 8860624 -188334808 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 652 6404 251 44 30 chr1 8860624 8860918 -188334514 + Lx6 LINE L1 6967 7271 -189 4 652 220 214 0 0 chr1 8860928 8860970 -188334462 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 4 652 25 0 0 0 chr1 8861066 8861091 -188334341 + AT_rich Low_complexity Low_complexity 1 25 0 4 652 557 261 26 73 chr1 8861094 8861326 -188334106 + L1_Rod LINE L1 2538 2758 -3089 4 652 761 128 13 13 chr1 8861329 8861479 -188333953 + GA-rich Low_complexity Low_complexity 1 150 0 4 652 202 203 0 48 chr1 8861507 8861569 -188333863 + A-rich Low_complexity Low_complexity 3 61 0 4 652 634 249 80 71 chr1 8861597 8861934 -188333498 + L1_Rod LINE L1 3107 3446 -2401 4 652 567 303 14 28 chr1 8861977 8862194 -188333238 + Lx6 LINE L1 7244 7457 -3 4 652 421 261 8 63 chr1 8862201 8862283 -188333149 + Lx9 LINE L1 6820 6901 -743 4 652 1527 230 70 15 chr1 8862283 8862681 -188332751 + MTC LTR MaLR 1 420 -1 4 652 421 261 8 63 chr1 8862681 8862725 -188332707 + Lx9 LINE L1 6902 6939 -705 4 652 1368 229 112 21 chr1 8862733 8863063 -188332369 + ORR1B2 LTR MaLR 1 360 -7 4 652 2147 191 59 15 chr1 8863066 8863524 -188331908 + ORR1B2-int LTR MaLR 1 478 -1031 4 652 260 254 0 0 chr1 8863524 8863579 -188331853 + Lx9 LINE L1 7139 7193 -451 4 652 1582 144 45 48 chr1 8863677 8863733 -188331699 + L1Md_F2 LINE L1 249 305 -6333 4 652 3935 45 10 10 chr1 8863733 8864230 -188331202 - L1Md_F3 LINE L1 -12 6572 6076 4 652 33160 99 15 10 chr1 8864230 8870775 -188324657 + L1Md_F2 LINE L1 1 6555 -27 4 652 3668 61 0 4 chr1 8870775 8871239 -188324193 + L1Md_F2 LINE L1 6120 6581 -1 4 652 21 57 0 0 chr1 8871373 8871408 -188324024 + AT_rich Low_complexity Low_complexity 1 35 0 4 652 288 301 0 0 chr1 8871408 8871501 -188323931 + Lx9 LINE L1 7315 7407 -237 4 652 29398 127 16 7 chr1 8871509 8877754 -188317678 + L1_Mus1 LINE L1 196 6564 -3 4 652 25 31 0 0 chr1 8877807 8877839 -188317593 + AT_rich Low_complexity Low_complexity 1 32 0 4 652 561 224 74 99 chr1 8877977 8878217 -188317215 + Lx5 LINE L1 6793 7054 -4 4 652 26 82 0 0 chr1 8878251 8878312 -188317120 + AT_rich Low_complexity Low_complexity 1 61 0 4 652 10170 166 7 2 chr1 8878482 8880375 -188315057 - Lx3C LINE L1 -1042 5934 4028 4 652 1173 198 126 44 chr1 8880393 8880813 -188314619 + ETnERV3-int LTR ERVK 316 668 -5469 4 652 401 174 101 0 chr1 8880813 8880922 -188314510 + ETnERV3-int LTR ERVK 1721 1840 -5566 4 652 328 279 0 55 chr1 8880942 8881033 -188314399 + ETnERV3-int LTR ERVK 2454 2539 -4867 4 652 5100 201 71 84 chr1 8881061 8882891 -188312541 + ETnERV3-int LTR ERVK 3583 5388 -420 4 652 841 274 11 0 chr1 8882880 8883211 -188312221 + ETnERV3-int LTR ERVK 7506 7748 -469 4 652 4106 174 23 17 chr1 8883261 8883961 -188311471 + ETnERV3-int LTR ERVK 6499 7202 -204 4 652 14085 123 28 29 chr1 8884347 8887086 -188308346 - Lx3C LINE L1 -1844 4042 1304 4 652 1127 75 7 0 chr1 8887086 8887232 -188308200 - B1_Mus2 SINE Alu 0 147 1 4 652 14085 133 6 18 chr1 8887232 8888165 -188307267 - Lx3C LINE L1 -5354 1303 384 4 652 13983 133 10 0 chr1 8888181 8890485 -188304947 + L1_Mm LINE L1 1467 3792 -2091 4 652 5106 188 2 150 chr1 8890483 8891058 -188304374 + L1_Mus3 LINE L1 4669 5238 -648 4 652 486 122 0 0 chr1 8891058 8891156 -188304276 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 4 652 5106 188 2 150 chr1 8891156 8891758 -188303674 + L1_Mus3 LINE L1 5239 5638 -248 4 652 4013 167 30 25 chr1 8891758 8892561 -188302871 + RMER17D2 LTR ERVK 1 807 -2 4 652 5106 113 95 9 chr1 8892561 8893473 -188301959 + L1_Mus3 LINE L1 5639 6630 -8 4 652 25 65 0 0 chr1 8893642 8893688 -188301744 + AT_rich Low_complexity Low_complexity 1 46 0 4 652 27 39 0 19 chr1 8893821 8893839 -188301593 + AT_rich Low_complexity Low_complexity 1 18 0 4 652 1590 27 21 0 chr1 8893839 8894027 -188301405 + B2_Mm1a SINE B2 2 193 0 4 652 27 39 0 19 chr1 8894027 8894060 -188301372 + AT_rich Low_complexity Low_complexity 1 33 0 4 652 11156 114 34 43 chr1 8895159 8896520 -188298912 + RLTR22_Mur LTR ERVK 1 1300 -548 4 652 489 104 0 0 chr1 8896520 8896597 -188298835 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 652 11156 114 34 43 chr1 8896597 8897098 -188298334 + RLTR22_Mur LTR ERVK 1301 1844 -4 4 652 302 253 30 54 chr1 8897320 8897487 -188297945 + (CA)n Simple_repeat Simple_repeat 2 164 0 4 652 944 261 66 40 chr1 8898968 8899271 -188296161 - MTEa LTR MaLR -1 378 68 4 652 504 32 0 0 chr1 8899283 8899345 -188296087 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 4 652 351 188 0 65 chr1 8899571 8899679 -188295753 + HAL1-2a_MD LINE L1 2418 2518 -506 4 652 269 120 0 39 chr1 8899680 8899732 -188295700 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 4 652 36 87 0 0 chr1 8899739 8899831 -188295601 + AT_rich Low_complexity Low_complexity 1 92 0 4 652 492 223 48 0 chr1 8899902 8900005 -188295427 + MTEa LTR MaLR 3 110 -269 4 652 23 54 0 0 chr1 8900347 8900384 -188295048 + AT_rich Low_complexity Low_complexity 1 37 0 4 652 578 241 42 7 chr1 8900944 8901086 -188294346 + B1_Mm SINE Alu 1 147 0 4 652 54 16 0 0 chr1 8902235 8902296 -188293136 + AT_rich Low_complexity Low_complexity 1 61 0 4 652 238 325 12 24 chr1 8902447 8902529 -188292903 - B3A SINE B2 -6 192 112 4 652 22 56 0 0 chr1 8902957 8902993 -188292439 + AT_rich Low_complexity Low_complexity 1 36 0 4 652 1842 191 52 36 chr1 8903752 8904191 -188291241 - RLTR41 LTR ERV1 0 446 1 4 652 307 328 16 8 chr1 8904783 8904906 -188290526 + Lx8 LINE L1 7039 7162 -311 4 652 509 296 143 48 chr1 8905207 8905480 -188289952 + Lx8 LINE L1 7169 7467 -6 4 652 530 303 105 0 chr1 8905637 8905789 -188289643 + B3A SINE B2 1 168 -30 4 652 229 301 53 122 chr1 8905835 8906024 -188289408 - LTR68 LTR ERV1 -112 628 453 4 652 826 165 38 71 chr1 8906069 8906252 -188289180 + RLTR41 LTR ERV1 1 177 -269 4 652 456 195 0 12 chr1 8906296 8906379 -188289053 + RLTR41 LTR ERV1 365 446 0 4 652 257 333 11 53 chr1 8906629 8906724 -188288708 + Tigger7 DNA MER2_type 14 104 -2387 4 652 2915 56 203 9 chr1 8906737 8907166 -188288266 + RLTR1B LTR ERV1 1 512 0 4 652 185 0 40 0 chr1 8907785 8907810 -188287622 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 652 1386 233 87 24 chr1 8907813 8908183 -188287249 + MTD LTR MaLR 25 417 -2 4 652 1661 235 44 76 chr1 8908185 8908810 -188286622 + MTD-int LTR MaLR 1 561 -537 4 652 263 28 28 0 chr1 8908848 8908884 -188286548 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 652 839 231 50 59 chr1 8908936 8909277 -188286155 - RLTR15 LTR ERVK -21 338 1 4 652 1164 276 129 25 chr1 8909290 8909732 -188285700 + MTD-int LTR MaLR 688 1175 -83 4 652 351 318 123 54 chr1 8911589 8911953 -188283479 + MLT2B4 LTR ERVL 6 395 -19 4 652 540 250 40 16 chr1 8912382 8912508 -188282924 + B1_Mur3 SINE Alu 1 129 -20 4 652 550 321 78 24 chr1 8912548 8912803 -188282629 + MLT1B LTR MaLR 1 269 -121 4 653 24 0 0 0 chr1 8913512 8913536 -188281896 + AT_rich Low_complexity Low_complexity 1 24 0 4 653 1047 133 75 0 chr1 8913996 8914169 -188281263 - B2_Mm2 SINE B2 -9 186 1 4 653 591 15 0 0 chr1 8914817 8914885 -188280547 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 653 2590 246 28 82 chr1 8915025 8915975 -188279457 + RMER17B LTR ERVK 1 899 -59 4 653 1267 203 173 25 chr1 8916618 8916977 -188278455 + RMER10A LTR ERVL 8 419 -23 4 653 597 28 0 0 chr1 8916981 8917052 -188278380 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 4 653 521 303 1 2 chr1 8917333 8917498 -188277934 + Lx8 LINE L1 6605 6767 -929 4 653 490 284 70 45 chr1 8917623 8917956 -188277476 + RMER17C LTR ERVK 1 381 -29 4 653 688 337 45 61 chr1 8917956 8918281 -188277151 + Lx8 LINE L1 6919 7238 -235 4 653 1109 65 0 0 chr1 8918281 8918420 -188277012 + B1_Mus1 SINE Alu 1 139 -9 4 653 194 0 39 0 chr1 8918420 8918446 -188276986 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 653 688 337 45 61 chr1 8918446 8918543 -188276889 + Lx8 LINE L1 7239 7334 -139 4 653 208 220 17 17 chr1 8918658 8918718 -188276714 + A-rich Low_complexity Low_complexity 3 62 0 4 653 351 173 0 0 chr1 8918750 8918831 -188276601 + T-rich Low_complexity Low_complexity 1 81 0 4 653 947 125 21 0 chr1 8918832 8918976 -188276456 - B1_Mus1 SINE Alu -1 147 1 4 653 869 326 78 34 chr1 8919307 8919780 -188275652 - Lx8 LINE L1 -216 7257 6764 4 653 867 164 89 49 chr1 8920027 8920252 -188275180 + Lx2B LINE L1 5923 6156 -902 4 653 1401 191 65 9 chr1 8920249 8920600 -188274832 + Lx2B LINE L1 6563 7011 -47 4 653 2155 150 52 3 chr1 8920603 8920719 -188274713 + RLTR31_Mm LTR ERVK 1 131 -430 4 653 339 25 0 0 chr1 8920719 8920759 -188274673 + (GGA)n Simple_repeat Simple_repeat 1 40 0 4 653 2155 150 52 3 chr1 8920759 8921029 -188274403 + RLTR31_Mm LTR ERVK 132 405 -156 4 653 339 83 0 62 chr1 8921030 8921094 -188274338 + RMER3D-int LTR ERVK 24 83 -2759 4 653 897 233 52 60 chr1 8921124 8921486 -188273946 + RMER3D-int LTR ERVK 166 849 -1993 4 653 508 169 58 17 chr1 8921552 8921672 -188273760 + RMER3D-int LTR ERVK 486 610 -2232 4 653 416 147 7 30 chr1 8921674 8921775 -188273657 + RMER3D-int LTR ERVK 1022 1089 -1753 4 653 1164 180 36 7 chr1 8921882 8922142 -188273290 + RMER3D-int LTR ERVK 1023 1279 -1563 4 653 942 330 37 60 chr1 8922218 8922653 -188272779 + MTE-int LTR MaLR 4 428 -1152 4 653 5467 69 18 1 chr1 8922671 8923384 -188272048 - L1_Mus2 LINE L1 -1 6565 5841 4 653 3757 96 11 0 chr1 8923384 8923913 -188271519 + L1_Mus2 LINE L1 5276 5810 -73 4 653 2848 322 80 21 chr1 8923913 8925009 -188270423 + MTE-int LTR MaLR 415 1575 -5 4 653 934 264 71 8 chr1 8925083 8925335 -188270097 + MTEa LTR MaLR 111 378 -1 5 653 837 30 0 0 chr1 8925898 8925998 -188269434 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 653 2241 131 32 34 chr1 8926190 8926600 -188268832 + RLTR9E LTR ERVK 1 409 0 5 653 1205 244 44 49 chr1 8926601 8926989 -188268443 + ETnERV2-int LTR ERVK 2 387 -2927 5 653 4274 151 98 48 chr1 8926999 8927333 -188268099 + ETnERV2-int LTR ERVK 1071 1424 -5982 5 653 1073 42 13 46 chr1 8927333 8927484 -188267948 + B1_Mus2 SINE Alu 2 147 0 5 653 4274 151 98 48 chr1 8927484 8928116 -188267316 + ETnERV2-int LTR ERVK 1425 2086 -5320 5 653 5075 133 45 47 chr1 8928140 8929144 -188266288 + ETnERV2-int LTR ERVK 2496 4247 -2997 5 653 3621 109 47 17 chr1 8929379 8929955 -188265477 + ETnERV2-int LTR ERVK 3441 4033 -3373 5 653 4225 94 0 0 chr1 8929943 8930484 -188264948 + ETnERV2-int LTR ERVK 4862 5402 -2004 5 653 4170 119 13 24 chr1 8930480 8931259 -188264173 + ETnERV2-int LTR ERVK 5682 6227 -1179 5 653 538 79 0 26 chr1 8931478 8931556 -188263876 + ETnERV2-int LTR ERVK 7331 7406 0 5 653 2600 116 5 29 chr1 8931556 8931975 -188263457 + RLTR9E LTR ERVK 1 409 0 5 653 226 271 80 53 chr1 8932073 8932186 -188263246 - Tigger5 DNA MER2_type 0 2406 2291 5 653 318 290 58 29 chr1 8932213 8932316 -188263116 - Tigger5 DNA MER2_type -2206 200 95 5 653 186 43 0 0 chr1 8932649 8932672 -188262760 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 5 653 23 0 0 0 chr1 8933463 8933486 -188261946 + AT_rich Low_complexity Low_complexity 1 23 0 5 653 207 0 0 0 chr1 8933495 8933518 -188261914 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 653 1180 62 0 14 chr1 8933518 8933656 -188261776 - B1_Mm SINE Alu -9 138 1 5 653 225 0 0 0 chr1 8933891 8933916 -188261516 + (T)n Simple_repeat Simple_repeat 1 25 0 5 653 219 36 0 0 chr1 8934195 8934223 -188261209 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 5 653 23 0 0 0 chr1 8935891 8935914 -188259518 + AT_rich Low_complexity Low_complexity 1 23 0 5 653 222 242 0 0 chr1 8936275 8936341 -188259091 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5 653 5478 117 58 8 chr1 8936566 8937464 -188257968 + Lx3B LINE L1 6028 6970 -3 5 653 212 184 0 0 chr1 8937469 8937507 -188257925 + A-rich Low_complexity Low_complexity 1 38 0 5 653 29 60 0 0 chr1 8938943 8938993 -188256439 + AT_rich Low_complexity Low_complexity 1 50 0 5 653 1545 27 43 0 chr1 8939217 8939402 -188256030 - B2_Mm1t SINE B2 0 193 1 5 653 2689 234 192 55 chr1 8940528 8941558 -188253874 + Lx9 LINE L1 5594 6764 -880 5 653 2345 158 35 24 chr1 8941560 8942014 -188253418 - RMER6B LTR ERVK -2 459 1 5 653 2246 217 76 4 chr1 8942016 8942557 -188252875 + Lx9 LINE L1 6789 7368 -276 5 653 299 241 60 0 chr1 8942555 8942671 -188252761 + Lx9 LINE L1 7522 7644 0 5 653 444 97 114 97 chr1 8942694 8942808 -188252624 - Lx3_Mus LINE L1 -1 7008 6893 5 653 320 326 105 60 chr1 8943869 8944202 -188251230 + L1MCa LINE L1 2080 2427 -4081 5 653 1618 16 0 25 chr1 8944405 8944602 -188250830 + B2_Mm1a SINE B2 2 193 0 5 653 279 275 84 13 chr1 8945021 8945246 -188250186 + L1MCa LINE L1 3168 3408 -2913 5 653 732 256 292 16 chr1 8945251 8945573 -188249859 - MTD LTR MaLR -8 411 1 5 653 23 33 0 0 chr1 8945769 8945799 -188249633 + AT_rich Low_complexity Low_complexity 1 30 0 5 653 397 342 93 47 chr1 8945869 8946010 -188249422 + L1M4 LINE L1 3539 3679 -2467 5 653 4742 65 11 3 chr1 8946010 8946629 -188248803 + L1_Mus1 LINE L1 5943 6566 -1 5 653 397 336 89 49 chr1 8946629 8946905 -188248527 + L1M4 LINE L1 3680 3979 -2167 5 653 250 219 95 14 chr1 8947241 8947315 -188248117 + RLTR6-int LTR ERV1 4479 4558 -3220 5 653 232 152 44 29 chr1 8947653 8947721 -188247711 + (CAAA)n Simple_repeat Simple_repeat 3 71 0 5 653 880 313 138 18 chr1 8947742 8948142 -188247290 + MuRRS4-int LTR ERV1 3556 3975 -1088 5 653 297 0 0 0 chr1 8948851 8948884 -188246548 + (A)n Simple_repeat Simple_repeat 1 33 0 5 653 982 284 96 5 chr1 8949091 8949717 -188245715 - L1MC1 LINE L1 -29 6304 5600 5 653 2247 164 22 24 chr1 8949889 8950339 -188245093 + Lx LINE L1 6203 6651 -3 5 653 923 70 8 0 chr1 8950631 8950759 -188244673 + (GA)n Simple_repeat Simple_repeat 1 129 0 5 653 3318 287 68 25 chr1 8951188 8952432 -188243000 - Lx9 LINE L1 -7 7637 6341 5 653 442 43 29 0 chr1 8952432 8952501 -188242931 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 5 653 281 26 26 0 chr1 8952672 8952710 -188242722 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 653 4005 74 20 2 chr1 8954975 8955513 -188239919 - L1_Mus1 LINE L1 -75 5808 5261 5 653 5628 94 8 1 chr1 8955513 8956301 -188239131 + L1_Mus1 LINE L1 5775 6567 0 5 653 203 179 0 0 chr1 8956316 8956355 -188239077 + A-rich Low_complexity Low_complexity 1 39 0 5 653 27 0 0 0 chr1 8956546 8956573 -188238859 + AT_rich Low_complexity Low_complexity 1 27 0 5 653 235 256 264 11 chr1 8956618 8956705 -188238727 - 7SK RNA RNA -220 111 3 5 653 281 82 20 0 chr1 8957621 8957670 -188237762 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 5 653 181 375 0 0 chr1 8957884 8957948 -188237484 - L2 LINE L2 -2668 751 688 5 653 1167 63 0 0 chr1 8958213 8958356 -188237076 - B1_Mus1 SINE Alu -5 143 1 5 653 449 330 130 0 chr1 8958583 8958768 -188236664 - ID_B1 SINE B4 -8 216 8 5 653 251 242 40 0 chr1 8958832 8958931 -188236501 - L1M2 LINE L1 -5135 1714 1612 5 653 270 143 0 0 chr1 8959159 8959208 -188236224 + (T)n Simple_repeat Simple_repeat 1 49 0 5 653 216 0 0 0 chr1 8959292 8959316 -188236116 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 653 519 17 0 0 chr1 8959316 8959375 -188236057 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 653 1013 62 0 0 chr1 8959375 8959504 -188235928 - L1_Mm LINE L1 -1011 4872 4744 5 653 360 0 0 0 chr1 8959504 8959544 -188235888 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 653 222 62 0 0 chr1 8959544 8959576 -188235856 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 653 2765 93 42 0 chr1 8959595 8960002 -188235430 - L1_Mus1 LINE L1 -6 6561 6138 5 653 29963 79 15 10 chr1 8960002 8964887 -188230545 - L1VL1 LINE L1 -330 5553 642 5 653 656 135 0 0 chr1 8964882 8964978 -188230454 - L1VL1 LINE L1 -6326 312 217 5 653 875 290 81 13 chr1 8965342 8965682 -188229750 - MTD LTR MaLR -21 398 49 5 653 1448 322 112 15 chr1 8965683 8966351 -188229081 - Lx8 LINE L1 -142 7331 6599 5 653 4626 127 1 78 chr1 8966417 8967245 -188228187 - Lx2A LINE L1 -1 7007 6244 5 653 2634 132 48 2 chr1 8967250 8967691 -188227741 + Lx2A LINE L1 5795 6255 -753 5 653 562 269 136 9 chr1 8967688 8967902 -188227530 - Lx8 LINE L1 -942 6531 6291 5 653 1596 309 78 30 chr1 8967982 8968722 -188226710 + Lx8 LINE L1 6698 7473 0 5 653 946 258 0 15 chr1 8968834 8969039 -188226393 + Lx6 LINE L1 7216 7417 -43 5 653 1000 111 7 20 chr1 8970292 8970439 -188224993 + B1_Mus1 SINE Alu 3 147 -1 5 653 586 330 114 59 chr1 8971148 8971570 -188223862 - MER44B DNA MER2_type -94 456 12 5 653 1815 142 39 7 chr1 8971763 8972068 -188223364 + ORR1A4 LTR MaLR 7 321 -8 5 653 691 181 99 28 chr1 8972373 8972551 -188222881 + B3 SINE B2 1 186 -9 5 653 517 198 1 1 chr1 8972926 8973025 -188222407 + MTC LTR MaLR 8 106 -290 5 653 5066 92 8 7 chr1 8973026 8973746 -188221686 - L1Md_F2 LINE L1 -12 6570 5850 5 653 3169 73 0 0 chr1 8973749 8974147 -188221285 + L1Md_F2 LINE L1 5459 5856 -27 5 653 1409 216 56 23 chr1 8974149 8974453 -188220979 + MTC LTR MaLR 105 418 -3 5 653 2680 71 6 3 chr1 8975025 8975378 -188220054 + L1_Mus3 LINE L1 6270 6623 -15 5 653 15345 148 27 16 chr1 8975407 8978627 -188216805 + L1_Mus1 LINE L1 277 3481 -2402 5 653 263 49 24 0 chr1 8978627 8978668 -188216764 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 653 15345 120 8 3 chr1 8978668 8978849 -188216583 + L1_Mus1 LINE L1 3482 3667 -2216 5 653 9572 98 14 16 chr1 8978829 8981012 -188214420 + L1_Mus1 LINE L1 4396 6566 -1 5 653 1913 291 45 58 chr1 8981056 8981708 -188213724 - Lx5 LINE L1 -19 7031 6389 5 653 1112 218 24 12 chr1 8981713 8981959 -188213473 + L1_Mur2 LINE L1 5347 5595 -282 5 653 320 0 25 0 chr1 8982238 8982278 -188213154 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 653 305 235 235 0 chr1 8982542 8982627 -188212805 + U6 snRNA snRNA 1 105 -2 5 653 637 231 66 60 chr1 8983054 8983342 -188212090 + Lx6 LINE L1 56 388 -7340 5 653 4154 210 13 17 chr1 8983335 8984741 -188210691 + Lx6 LINE L1 5197 6593 -867 5 653 243 306 0 0 chr1 8985579 8985651 -188209781 + MLT1A1 LTR MaLR 337 408 0 5 653 312 91 0 0 chr1 8986124 8986168 -188209264 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 653 24 85 0 0 chr1 8986752 8986811 -188208621 + AT_rich Low_complexity Low_complexity 1 59 0 5 653 468 0 0 0 chr1 8987026 8987078 -188208354 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 653 21 0 0 0 chr1 8987316 8987337 -188208095 + AT_rich Low_complexity Low_complexity 1 21 0 5 653 39 0 0 0 chr1 8987414 8987453 -188207979 + AT_rich Low_complexity Low_complexity 1 39 0 5 653 4291 41 0 0 chr1 8987662 8988174 -188207258 + L1Md_F2 LINE L1 6069 6580 -2 5 653 2665 190 14 12 chr1 8988472 8988973 -188206459 + RMER5 LTR ERV1 3 504 -30 5 653 5640 130 45 15 chr1 8989457 8990223 -188205209 + L1_Mus3 LINE L1 371 1165 -5469 5 653 279 0 0 0 chr1 8990223 8990254 -188205178 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 653 20446 158 30 66 chr1 8990254 8990681 -188204751 + L1_Mus3 LINE L1 1166 1593 -4290 5 653 1077 88 0 0 chr1 8990681 8990817 -188204615 + B1_Mm SINE Alu 2 137 -10 5 653 20446 177 20 102 chr1 8990817 8993268 -188202164 + L1_Mus3 LINE L1 1594 4084 -1799 5 653 360 59 0 0 chr1 8993268 8993319 -188202113 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 653 20446 147 23 68 chr1 8993319 8996308 -188199124 + L1_Mus3 LINE L1 4085 6638 0 5 653 6588 130 19 15 chr1 8996302 8997656 -188197776 + Lx LINE L1 5288 6649 -5 5 653 243 0 0 0 chr1 8997911 8997938 -188197494 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 653 530 255 0 9 chr1 8997976 8998083 -188197349 + ORR1B1-int LTR MaLR 887 992 -517 5 653 798 319 88 13 chr1 8998094 8998399 -188197033 - Lx8 LINE L1 -592 6881 6554 5 653 417 240 0 62 chr1 8998521 8998650 -188196782 - Lx6 LINE L1 -26 7434 7314 5 653 318 333 137 61 chr1 8999056 8999334 -188196098 + L1MDa LINE L1 37 335 -6298 5 653 1390 69 37 0 chr1 9000308 9000496 -188194936 + B2_Mm2 SINE B2 1 195 0 1 653 531 0 0 0 chr1 9000862 9000921 -188194511 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 653 323 237 47 21 chr1 9000956 9001087 -188194345 - Lx7 LINE L1 -1800 5896 5728 3 653 338 132 0 0 chr1 9001108 9001161 -188194271 + B3 SINE B2 2 54 -162 4 653 363 318 58 61 chr1 9001416 9001677 -188193755 + L1MDa LINE L1 1433 1692 -4941 5 653 256 239 80 80 chr1 9001709 9001809 -188193623 + RMER15-int LTR ERVL 4632 4731 -268 6 653 336 363 124 38 chr1 9001842 9002108 -188193324 + Lx8 LINE L1 6990 7278 -195 7 653 25 0 0 0 chr1 9002153 9002178 -188193254 + AT_rich Low_complexity Low_complexity 1 25 0 8 653 197 33 33 0 chr1 9002243 9002273 -188193159 + (TA)n Simple_repeat Simple_repeat 2 32 0 9 653 545 338 95 57 chr1 9002874 9003737 -188191695 + L1MDa LINE L1 3012 3907 -2630 5 653 249 33 0 0 chr1 9003740 9003770 -188191662 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 653 248 264 0 0 chr1 9003777 9003830 -188191602 + L1MDa LINE L1 3906 3958 -2579 5 653 5309 219 40 23 chr1 9004015 9005166 -188190266 + Lx6 LINE L1 6286 7456 -4 1 653 2480 167 75 29 chr1 9005238 9005662 -188189770 + RLTR20A LTR ERVK 1 448 -93 1 653 324 0 0 0 chr1 9005662 9005698 -188189734 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 653 2480 167 75 29 chr1 9005698 9005790 -188189642 + RLTR20A LTR ERVK 449 540 -1 1 653 263 254 104 24 chr1 9005848 9005973 -188189459 + L1MC LINE L1 3839 3973 -2173 1 653 28 0 0 0 chr1 9005990 9006018 -188189414 + AT_rich Low_complexity Low_complexity 1 28 0 1 653 365 336 14 41 chr1 9006051 9006197 -188189235 + ID_B1 SINE B4 7 148 -76 1 653 271 185 15 30 chr1 9006201 9006268 -188189164 - RMER19C LTR ERVK 0 902 837 1 653 6416 129 33 19 chr1 9006268 9007294 -188188138 - Lx LINE L1 -6 6648 5608 1 653 1709 236 61 45 chr1 9007294 9007738 -188187694 - RMER19C LTR ERVK -52 559 109 1 653 23 0 0 0 chr1 9007948 9007971 -188187461 + AT_rich Low_complexity Low_complexity 1 23 0 1 653 692 157 9 9 chr1 9008153 9008269 -188187163 + RMER19C LTR ERVK 1 116 -495 2 653 248 250 0 0 chr1 9008425 9008489 -188186943 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 653 2775 81 17 52 chr1 9008694 9009113 -188186319 - L1_Mus2 LINE L1 -1 6565 6162 2 653 1227 294 19 22 chr1 9009592 9010009 -188185423 - Lx9 LINE L1 -599 7045 6630 2 653 713 289 31 40 chr1 9010012 9010068 -188185364 + Lx9 LINE L1 6370 6427 -1217 2 653 2607 98 57 8 chr1 9010068 9010239 -188185193 + BGLII_Mus LTR ERVK 1 187 -235 2 653 474 18 0 0 chr1 9010239 9010294 -188185138 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 653 207 0 0 0 chr1 9010295 9010318 -188185114 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2 653 2607 98 57 8 chr1 9010318 9010546 -188184886 + BGLII_Mus LTR ERVK 188 422 0 2 653 713 289 31 40 chr1 9010546 9010716 -188184716 + Lx9 LINE L1 6428 6594 -1050 2 653 515 43 14 0 chr1 9011925 9011995 -188183437 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 653 217 96 80 27 chr1 9012687 9012762 -188182670 + T-rich Low_complexity Low_complexity 1 79 0 2 653 1079 75 7 14 chr1 9012762 9012910 -188182522 - B1_Mus2 SINE Alu 0 147 1 3 653 356 370 29 29 chr1 9014621 9014830 -188180602 + HAL1 LINE L1 125 333 -2174 3 653 797 154 15 0 chr1 9015138 9015274 -188180158 + URR1B DNA MER1_type 88 225 0 3 653 479 299 0 29 chr1 9015274 9015412 -188180020 + MTE-int LTR MaLR 241 374 -1206 3 653 1215 332 178 24 chr1 9015563 9016047 -188179385 + MTE-int LTR MaLR 806 1335 -245 3 653 405 0 0 0 chr1 9016047 9016092 -188179340 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 653 1215 332 178 24 chr1 9016092 9016277 -188179155 + MTE-int LTR MaLR 1336 1577 -3 3 653 779 316 70 68 chr1 9016287 9016658 -188178774 + MTE2a LTR MaLR 35 379 0 3 653 333 123 14 0 chr1 9017099 9017172 -188178260 - L1_Mus3 LINE L1 0 6638 6565 3 653 1089 100 6 0 chr1 9017175 9017335 -188178097 - MusHAL1 LINE L1 -1171 1541 1381 3 653 219 189 0 0 chr1 9017514 9017567 -188177865 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 653 23 54 0 0 chr1 9017614 9017651 -188177781 + AT_rich Low_complexity Low_complexity 1 37 0 3 653 263 330 61 18 chr1 9017820 9017934 -188177498 + ORR1E LTR MaLR 4 122 -237 4 653 3974 65 2 8 chr1 9017949 9018460 -188176972 - L1_Mus1 LINE L1 -116 6451 5944 4 653 5519 22 113 0 chr1 9018684 9019356 -188176076 + L1Md_A LINE L1 5835 6582 0 4 653 351 0 0 0 chr1 9019460 9019499 -188175933 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 653 1131 76 0 0 chr1 9019779 9019923 -188175509 + B1_Mus2 SINE Alu 4 147 0 4 653 2547 233 33 26 chr1 9020712 9021315 -188174117 - Lx6 LINE L1 -869 6591 5985 4 653 2880 256 98 11 chr1 9021301 9022055 -188173377 + Lx6 LINE L1 6637 7456 -4 4 653 1386 235 34 94 chr1 9022478 9022924 -188172508 + MTD LTR MaLR 1 419 0 4 653 204 333 24 47 chr1 9023611 9023696 -188171736 + L2a LINE L2 3027 3109 -317 4 653 1279 95 16 21 chr1 9023778 9023972 -188171460 - B2_Mm1t SINE B2 0 193 1 4 653 397 76 30 0 chr1 9025986 9026052 -188169380 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 653 1469 251 109 5 chr1 9026515 9026956 -188168476 + MT2A LTR ERVL 1 487 -46 5 653 282 74 56 0 chr1 9026963 9027017 -188168415 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 653 250 121 0 0 chr1 9027163 9027221 -188168211 + MT2A LTR ERVL 467 524 -9 5 653 366 325 34 13 chr1 9027965 9028171 -188167261 + Lx8 LINE L1 4968 5207 -673 5 653 1303 345 42 17 chr1 9028171 9028770 -188166662 + Lx8 LINE L1 6668 7281 -192 5 653 7320 104 16 0 chr1 9029455 9030628 -188164804 - L1_Mus3 LINE L1 0 6638 5447 5 653 7459 78 39 7 chr1 9030625 9032008 -188163424 - L1Md_F2 LINE L1 -12 6570 5123 5 653 5125 128 14 1 chr1 9032009 9032818 -188162614 + L1Md_F2 LINE L1 4292 5110 -773 5 653 7771 68 4 4 chr1 9032835 9034122 -188161310 - L1_Mus1 LINE L1 -2 6565 5280 5 653 255 277 202 0 chr1 9034114 9034208 -188161224 + L1M2 LINE L1 4880 4992 -1151 5 653 317 316 43 29 chr1 9034307 9034447 -188160985 + L1M2 LINE L1 5135 5276 -867 5 653 619 290 85 83 chr1 9034449 9034910 -188160522 + Lx8 LINE L1 5216 5672 -208 5 653 41060 5 0 0 chr1 9034925 9041275 -188154157 - L1Md_A LINE L1 0 6582 232 5 653 632 240 53 0 chr1 9041272 9041480 -188153952 + Lx8 LINE L1 5629 5847 0 5 653 1038 104 0 20 chr1 9041483 9041495 -188153937 - B1_Mus2 SINE Alu 0 147 138 5 653 213 65 0 0 chr1 9041495 9041526 -188153906 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 653 1038 104 0 20 chr1 9041526 9041660 -188153772 - B1_Mus2 SINE Alu -10 137 4 5 653 21 57 0 0 chr1 9042080 9042115 -188153317 + AT_rich Low_complexity Low_complexity 1 35 0 6 653 744 292 21 21 chr1 9042117 9042355 -188153077 + Lx8 LINE L1 6173 6410 -1063 5 653 1008 197 89 57 chr1 9043444 9043691 -188151741 + MTC LTR MaLR 167 421 0 6 653 338 70 42 14 chr1 9043756 9043828 -188151604 + (TTG)n Simple_repeat Simple_repeat 2 75 0 6 81 1709 181 29 50 chr1 9043864 9044283 -188151149 + RMER17C LTR ERVK 1 410 0 6 654 387 60 0 0 chr1 9044430 9044480 -188150952 + (TGG)n Simple_repeat Simple_repeat 3 52 0 6 654 633 234 7 14 chr1 9044496 9044643 -188150789 - B1_Mus1 SINE Alu 0 148 3 6 654 334 345 26 0 chr1 9046413 9046529 -188148903 + MLT1A0 LTR MaLR 1 119 -246 6 654 301 335 100 53 chr1 9046562 9046732 -188148700 + MLT1A0 LTR MaLR 184 361 -13 6 654 673 342 53 32 chr1 9046801 9047085 -188148347 + B4A SINE B4 1 290 -2 6 654 335 23 23 0 chr1 9047108 9047152 -188148280 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 654 504 321 68 36 chr1 9047399 9047825 -188147607 - MTD-int LTR MaLR -750 508 3 7 654 942 276 210 6 chr1 9047826 9048169 -188147263 - MTD LTR MaLR 0 419 7 7 654 35127 48 1 3 chr1 9048236 9053634 -188141798 + L1Md_T LINE L1 109 5589 -297 7 654 8501 28 0 2 chr1 9053634 9054632 -188140800 + L1Md_T LINE L1 5590 6585 0 7 654 2563 281 98 62 chr1 9054645 9054778 -188140654 - Tigger1 DNA MER2_type -410 2008 1879 7 654 3185 34 34 0 chr1 9054778 9055161 -188140271 - MTA_Mm LTR MaLR 0 396 1 7 654 2563 281 98 62 chr1 9055161 9055830 -188139602 - Tigger1 DNA MER2_type -540 1878 1126 7 654 1115 41 0 0 chr1 9055830 9055976 -188139456 - L1Md_A LINE L1 0 6582 6437 7 654 2563 281 98 62 chr1 9055976 9056300 -188139132 - Tigger1 DNA MER2_type -1293 1125 841 7 654 3668 169 6 11 chr1 9056316 9056946 -188138486 - Lx2A1 LINE L1 -11 6997 6371 7 654 30329 119 16 6 chr1 9057075 9063375 -188132057 - L1_Mus1 LINE L1 -1 6566 201 7 654 7631 158 23 4 chr1 9063378 9065318 -188130114 - Lx2A1 LINE L1 -591 6417 4431 7 654 3310 167 2 0 chr1 9065312 9065904 -188129528 + Lx2A1 LINE L1 3804 4396 -1481 7 654 738 271 191 25 chr1 9066136 9066631 -188128801 - Tigger1 DNA MER2_type -1828 590 14 7 654 480 364 21 91 chr1 9066754 9067093 -188128339 + ORR1E LTR MaLR 1 315 -44 7 654 360 0 0 0 chr1 9067118 9067158 -188128274 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 654 19383 160 30 26 chr1 9067331 9070708 -188124724 + Lx3C LINE L1 2050 5445 -432 8 654 4071 104 27 0 chr1 9070708 9071302 -188124130 + L1Md_F3 LINE L1 5975 6584 0 8 654 19383 115 19 17 chr1 9071302 9072826 -188122606 + Lx3C LINE L1 5446 6976 0 8 654 7480 171 42 14 chr1 9072841 9074406 -188121026 + Lx4B LINE L1 5435 7037 -21 8 654 204 40 0 0 chr1 9074406 9074431 -188121001 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 654 573 277 27 0 chr1 9074442 9074590 -188120842 + MTD LTR MaLR 26 177 -242 8 654 7127 122 12 6 chr1 9076070 9077748 -188117684 - L1_Mus3 LINE L1 -7 6631 4943 8 654 4010 129 17 40 chr1 9077748 9078141 -188117291 + L1_Mm LINE L1 4241 4630 -1253 8 654 365 0 22 0 chr1 9078141 9078186 -188117246 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 8 654 4010 129 17 40 chr1 9078186 9078487 -188116945 + L1_Mm LINE L1 4631 4919 -964 8 654 201 271 51 0 chr1 9078790 9078849 -188116583 - MIR SINE MIR -15 247 186 8 654 1515 70 0 0 chr1 9079302 9079502 -188115930 + L1_Mus1 LINE L1 6368 6567 0 8 654 4165 79 4 2 chr1 9079496 9080054 -188115378 + L1_Mus1 LINE L1 6007 6565 -2 9 654 318 106 0 0 chr1 9080087 9080134 -188115298 + (A)n Simple_repeat Simple_repeat 1 47 0 9 654 600 276 16 46 chr1 9081775 9081969 -188113463 + B3A SINE B2 2 189 -9 9 654 8896 86 7 3 chr1 9082163 9083418 -188112014 + L1_Mm LINE L1 3029 4288 -1595 9 654 515 328 42 29 chr1 9083454 9083765 -188111667 + Lx7 LINE L1 5963 6277 -1419 9 654 33888 81 10 6 chr1 9083773 9089862 -188105570 + L1Md_F2 LINE L1 446 6561 -21 9 654 366 23 0 0 chr1 9089862 9089905 -188105527 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 654 2589 293 98 10 chr1 9089906 9090825 -188104607 + Lx7 LINE L1 6257 7256 -440 9 654 31 0 0 0 chr1 9090957 9090988 -188104444 + AT_rich Low_complexity Low_complexity 1 31 0 9 654 936 152 60 22 chr1 9090989 9091171 -188104261 + B2_Mm2 SINE B2 1 189 -6 9 654 491 252 9 0 chr1 9091243 9091354 -188104078 - Lx9 LINE L1 -369 7275 7164 1 654 2637 80 0 16 chr1 9091397 9091765 -188103667 + L1Md_F2 LINE L1 6221 6582 0 1 654 274 267 0 0 chr1 9091808 9091868 -188103564 + Lx8 LINE L1 7175 7234 -239 1 654 612 126 17 8 chr1 9091986 9092106 -188103326 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 1 654 640 283 43 80 chr1 9092340 9092666 -188102766 - RMER10A LTR ERVL -7 435 122 1 654 373 248 37 110 chr1 9092829 9092992 -188102440 - RLTR19-int LTR ERVK -3114 3023 2873 1 654 36 40 0 0 chr1 9093324 9093374 -188102058 + AT_rich Low_complexity Low_complexity 1 50 0 1 654 261 0 0 0 chr1 9094011 9094040 -188101392 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 654 396 0 0 0 chr1 9094197 9094241 -188101191 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 654 1073 52 15 0 chr1 9094241 9094376 -188101056 - B1_Mm SINE Alu -10 137 1 1 654 222 118 0 0 chr1 9095852 9095886 -188099546 + (T)n Simple_repeat Simple_repeat 1 34 0 1 654 7419 127 61 3 chr1 9096243 9098242 -188097190 + L1_Mus4 LINE L1 4478 6627 -9 1 654 183 42 0 0 chr1 9098242 9098266 -188097166 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1 654 27 0 0 0 chr1 9098421 9098448 -188096984 + AT_rich Low_complexity Low_complexity 1 27 0 1 654 23 68 0 0 chr1 9100292 9100336 -188095096 + AT_rich Low_complexity Low_complexity 1 44 0 1 654 1140 193 18 5 chr1 9100779 9100998 -188094434 + URR1A DNA MER1_type 1 222 -4 1 654 993 88 6 12 chr1 9101585 9101746 -188093686 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 1 654 14021 175 52 5 chr1 9101933 9105194 -188090238 + Lx3B LINE L1 684 4104 -1782 1 654 3863 140 5 15 chr1 9105175 9105872 -188089560 + Lx3B LINE L1 5243 5925 -1048 1 654 832 204 46 14 chr1 9105859 9106098 -188089334 - Lx6 LINE L1 -1648 6048 5780 1 654 7321 83 7 3 chr1 9106149 9107230 -188088202 - L1Md_F2 LINE L1 0 6582 5498 1 654 3526 69 8 2 chr1 9107221 9107698 -188087734 + L1Md_F2 LINE L1 5009 5488 -395 1 654 783 215 37 85 chr1 9107691 9107961 -188087471 - Lx6 LINE L1 -109 5771 5515 1 654 2380 196 121 6 chr1 9108107 9108221 -188087211 - Lx2B LINE L1 -5 6995 6883 1 654 225 0 0 0 chr1 9108221 9108246 -188087186 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 654 2380 196 121 6 chr1 9108246 9108629 -188086803 - Lx2B LINE L1 -118 6882 6441 1 654 1437 189 8 0 chr1 9108622 9108886 -188086546 + Lx3B LINE L1 6162 6427 -573 1 654 1897 244 20 2 chr1 9108879 9109274 -188086158 + Lx6 LINE L1 6890 7291 -169 1 654 278 106 21 0 chr1 9109289 9109336 -188086096 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1 654 316 240 56 28 chr1 9109375 9109482 -188085950 + Lx7 LINE L1 7189 7298 -398 1 654 29 0 0 0 chr1 9109529 9109558 -188085874 + AT_rich Low_complexity Low_complexity 1 29 0 1 654 459 152 89 0 chr1 9110239 9110318 -188085114 - B3 SINE B2 -130 86 1 1 654 8963 19 5 22 chr1 9110846 9112559 -188082873 + L1Md_A LINE L1 215 1894 -3989 1 654 16014 12 0 0 chr1 9112556 9114386 -188081046 + L1Md_A LINE L1 3757 5586 -297 1 654 8763 17 0 0 chr1 9114386 9115382 -188080050 + L1Md_A LINE L1 5587 6582 0 1 654 778 268 9 55 chr1 9115977 9116194 -188079238 + B3 SINE B2 3 209 -7 1 654 28 0 0 0 chr1 9116520 9116548 -188078884 + AT_rich Low_complexity Low_complexity 1 28 0 1 654 344 332 121 69 chr1 9116570 9116991 -188078441 + L1MEf LINE L1 966 1408 -4792 1 654 1112 89 0 0 chr1 9117319 9117465 -188077967 - B1_Mus1 SINE Alu -1 147 2 1 654 243 391 66 5 chr1 9117532 9117730 -188077702 + MER58A DNA MER1_type 12 221 -3 1 654 357 284 108 55 chr1 9120085 9120287 -188075145 + MLT1B LTR MaLR 34 250 -217 1 654 237 132 0 0 chr1 9120337 9120375 -188075057 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1 654 477 349 60 42 chr1 9120384 9120776 -188074656 - MLT1-int LTR MaLR -4 1731 991 1 654 3168 91 2 5 chr1 9120930 9121370 -188074062 - L1Md_F2 LINE L1 -203 6379 5941 1 654 1196 71 49 5 chr1 9121370 9121554 -188073878 + L1_Mus1 LINE L1 6376 6567 0 1 654 310 321 93 12 chr1 9121574 9121735 -188073697 - MLT1-int LTR MaLR -539 832 659 1 654 571 204 102 5 chr1 9121740 9121929 -188073503 + Lx4B LINE L1 6766 7050 -8 1 654 236 100 25 0 chr1 9121937 9121977 -188073455 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 654 694 285 109 30 chr1 9122178 9122482 -188072950 - RMER5 LTR ERV1 -82 452 125 1 654 249 184 0 75 chr1 9123926 9123979 -188071453 - B1_Mur4 SINE Alu -2 148 100 1 654 575 291 158 0 chr1 9124022 9124187 -188071245 - B3 SINE B2 -21 195 5 1 654 1893 325 96 32 chr1 9124233 9125328 -188070104 - Lx8 LINE L1 -151 7322 6158 1 654 8248 35 1 1 chr1 9125331 9126546 -188068886 - L1Md_A LINE L1 -2 6580 5365 1 654 3595 227 23 13 chr1 9126603 9127385 -188068047 + Lx9 LINE L1 6572 7361 -283 1 654 22 35 0 0 chr1 9127689 9127718 -188067714 + AT_rich Low_complexity Low_complexity 1 29 0 1 654 316 275 40 18 chr1 9128164 9128275 -188067157 + B4 SINE B4 60 167 -125 1 654 423 171 26 0 chr1 9128200 9128276 -188067156 + B1_Mus1 SINE Alu 5 82 -66 1 654 1428 289 61 15 chr1 9128982 9129460 -188065972 - MMAR1 DNA Mariner 0 1286 787 1 654 5910 157 2 8 chr1 9129460 9130513 -188064919 - L1_Mm LINE L1 -1458 4425 3380 1 654 5585 107 27 0 chr1 9130515 9131722 -188063710 + L1_Mus4 LINE L1 5076 6335 -301 1 654 1236 116 40 5 chr1 9131720 9131920 -188063512 - Lx3A LINE L1 -185 6796 6590 1 654 692 302 32 12 chr1 9131952 9132200 -188063232 + Lx8 LINE L1 7040 7292 -181 1 654 1879 169 8 62 chr1 9132227 9132600 -188062832 - ORR1B1 LTR MaLR -40 354 2 1 654 306 0 0 0 chr1 9132633 9132667 -188062765 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 654 878 277 27 5 chr1 9132667 9132888 -188062544 - Lx8 LINE L1 -961 6512 6287 1 654 1618 37 0 0 chr1 9133189 9133379 -188062053 + B2_Mm1a SINE B2 2 191 -2 1 654 820 283 106 60 chr1 9133812 9134053 -188061379 - Lx8 LINE L1 -10 7463 7211 1 654 3222 105 154 0 chr1 9134053 9134559 -188060873 - MT2B2 LTR ERVL 0 584 1 1 654 820 283 106 60 chr1 9134559 9134648 -188060784 - Lx8 LINE L1 -263 7210 7118 1 654 314 307 100 21 chr1 9135200 9135529 -188059903 + L1MD2 LINE L1 5611 5965 -394 1 654 282 310 0 0 chr1 9136110 9136210 -188059222 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 654 3667 263 113 55 chr1 9137082 9138688 -188056744 + Lx9 LINE L1 5824 7643 -1 1 654 848 101 8 0 chr1 9138934 9139063 -188056369 + (GA)n Simple_repeat Simple_repeat 2 131 0 1 654 315 122 0 0 chr1 9140848 9140897 -188054535 + (A)n Simple_repeat Simple_repeat 1 49 0 1 654 324 284 48 88 chr1 9142291 9142765 -188052667 - L1M5 LINE L1 -384 5800 5350 1 654 671 98 0 0 chr1 9142807 9142899 -188052533 + BGLII LTR ERVK 1 92 -329 1 654 1286 329 87 16 chr1 9143502 9144385 -188051047 - Lx7 LINE L1 -526 7170 6202 1 654 377 20 20 0 chr1 9144387 9144437 -188050995 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 654 1123 277 53 35 chr1 9144629 9145059 -188050373 - Lx7 LINE L1 -1770 5926 5483 1 654 305 340 21 0 chr1 9145248 9145345 -188050087 + PB1D10 SINE Alu 6 104 -13 1 654 250 321 82 36 chr1 9145345 9145357 -188050075 + B4A SINE B4 91 204 -88 1 654 183 67 89 0 chr1 9146244 9146289 -188049143 + T-rich Low_complexity Low_complexity 2 50 0 1 654 195 42 0 0 chr1 9146769 9146793 -188048639 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1 654 234 105 0 0 chr1 9147551 9147589 -188047843 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 1 654 482 333 0 0 chr1 9147592 9147730 -188047702 - B1_Mur2 SINE Alu -11 138 1 1 654 21 82 0 0 chr1 9148660 9148709 -188046723 + AT_rich Low_complexity Low_complexity 1 49 0 1 654 26 30 0 0 chr1 9149899 9149932 -188045500 + AT_rich Low_complexity Low_complexity 1 33 0 1 654 447 261 115 25 chr1 9150002 9150124 -188045308 - RSINE1 SINE B4 -29 136 4 1 654 442 326 0 68 chr1 9150887 9151078 -188044354 + B3A SINE B2 5 182 -16 1 654 232 268 27 27 chr1 9151171 9151244 -188044188 + L3 LINE CR1 704 776 -3713 1 654 1130 209 7 75 chr1 9151269 9151574 -188043858 + Lx3_Mus LINE L1 29 312 -6672 1 654 31813 88 33 13 chr1 9151629 9157802 -188037630 + Lx3_Mus LINE L1 676 7001 -8 1 654 191 57 0 79 chr1 9157813 9157829 -188037603 + (CAAAAA)n Simple_repeat Simple_repeat 2 15 0 1 654 1072 102 0 13 chr1 9157829 9157978 -188037454 + B1_Mus1 SINE Alu 2 148 0 1 654 191 57 0 79 chr1 9157978 9157999 -188037433 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 654 220 301 0 76 chr1 9159369 9159448 -188035984 + PB1D10 SINE Alu 28 100 -17 1 654 267 287 11 22 chr1 9159451 9159540 -188035892 + GA-rich Low_complexity Low_complexity 2 89 0 1 654 1065 58 0 0 chr1 9159797 9159936 -188035496 + B1_Mus2 SINE Alu 9 147 0 1 654 189 0 0 0 chr1 9159936 9159957 -188035475 + (A)n Simple_repeat Simple_repeat 1 21 0 1 654 256 333 0 0 chr1 9160641 9160719 -188034713 + ID_B1 SINE B4 146 223 -1 1 654 1614 263 39 58 chr1 9161265 9161855 -188033577 + L1_Mur3 LINE L1 2756 3334 -2546 1 654 503 291 51 57 chr1 9161968 9162143 -188033289 + B3 SINE B2 6 179 -37 1 654 182 200 22 0 chr1 9162157 9162202 -188033230 - L3 LINE CR1 -3422 1067 1022 1 654 238 311 0 82 chr1 9162704 9162802 -188032630 + Charlie7 DNA MER1_type 851 940 -1672 1 654 1814 65 0 0 chr1 9163347 9163578 -188031854 - L1_Mus1 LINE L1 0 6567 6337 1 654 4015 113 2 13 chr1 9163758 9164358 -188031074 + L1_Mus4 LINE L1 6043 6635 -1 1 654 786 312 16 0 chr1 9164707 9164957 -188030475 - Lx8 LINE L1 -201 7272 7019 1 654 2399 133 49 70 chr1 9165011 9165479 -188029953 + Lx LINE L1 6182 6639 -15 1 654 38503 5 0 0 chr1 9165480 9171060 -188024372 + L1Md_A LINE L1 7 5586 -297 1 654 8996 3 0 0 chr1 9171060 9172056 -188023376 + L1Md_A LINE L1 5587 6582 0 1 654 22 0 0 0 chr1 9172069 9172091 -188023341 + AT_rich Low_complexity Low_complexity 1 22 0 1 654 15306 104 24 25 chr1 9172107 9174950 -188020482 + L1VL4 LINE L1 356 3186 -728 1 81 1720 78 7 59 chr1 9174950 9175221 -188020211 + L1_Mus2 LINE L1 6309 6565 -1 2 655 15306 122 27 29 chr1 9175221 9176006 -188019426 + L1VL4 LINE L1 3187 3951 -1935 1 655 5728 126 14 1 chr1 9176005 9177176 -188018256 + Lx LINE L1 4896 6079 -575 2 655 1987 188 18 8 chr1 9177180 9177576 -188017856 + Lx LINE L1 6249 6648 -6 2 655 1569 315 74 47 chr1 9177573 9178279 -188017153 - Lx8 LINE L1 -525 6948 6224 2 655 283 261 194 11 chr1 9178381 9178474 -188016958 + 7SK RNA RNA 2 111 -220 2 655 2492 71 0 0 chr1 9178634 9178957 -188016475 + L1_Mus1 LINE L1 6245 6567 0 2 655 408 331 136 26 chr1 9179506 9179779 -188015653 + MER74A LTR ERVL 246 548 -10 2 655 2253 264 108 28 chr1 9179781 9180810 -188014622 + Lx5 LINE L1 1576 2686 -3194 2 655 830 239 3 52 chr1 9180801 9181088 -188014344 - L1_Mur3 LINE L1 -1978 3902 3630 2 655 1208 184 90 3 chr1 9181169 9181468 -188013964 + Lx5 LINE L1 4839 5163 -717 2 655 334 315 9 0 chr1 9181558 9181669 -188013763 + MTD-int LTR MaLR 1147 1258 0 2 655 1456 236 73 52 chr1 9181733 9181920 -188013512 + MTD LTR MaLR 13 205 -214 2 655 6567 109 17 6 chr1 9181920 9182920 -188012512 + Lx2A1 LINE L1 5984 6994 -14 2 655 888 10 0 0 chr1 9182925 9183026 -188012406 + (GGAAA)n Simple_repeat Simple_repeat 3 103 0 2 655 1456 236 73 52 chr1 9183026 9183129 -188012303 + MTD LTR MaLR 206 313 -106 2 655 630 141 0 0 chr1 9183129 9183257 -188012175 + (CTG)n Simple_repeat Simple_repeat 1 128 0 2 655 338 0 24 0 chr1 9183259 9183301 -188012131 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 2 655 1456 236 73 52 chr1 9183301 9183384 -188012048 + MTD LTR MaLR 314 402 -17 2 655 2694 325 73 39 chr1 9183396 9184940 -188010492 + Lx8 LINE L1 5599 7195 -278 2 655 1009 87 7 0 chr1 9185115 9185253 -188010179 + B1_Mus1 SINE Alu 2 140 -8 2 655 26 74 0 0 chr1 9185329 9185383 -188010049 + AT_rich Low_complexity Low_complexity 1 54 0 2 655 578 304 55 24 chr1 9186161 9186326 -188009106 - B3 SINE B2 -39 177 8 2 655 2994 145 21 13 chr1 9186393 9186917 -188008515 - L1_Mur2 LINE L1 -1495 4382 3855 2 655 6521 219 36 4 chr1 9186918 9188466 -188006966 + Lx5 LINE L1 5432 7047 -3 2 655 221 245 0 0 chr1 9188976 9189025 -188006407 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 2 655 328 251 250 27 chr1 9189828 9190012 -188005420 - RLTR22_Mus LTR ERVK -42 1766 1542 2 655 3254 102 89 32 chr1 9190188 9190726 -188004706 - Lx LINE L1 0 6654 6086 2 655 3129 189 34 52 chr1 9190879 9191475 -188003957 - RLTR22_Mur LTR ERVK -1096 752 176 2 655 408 125 0 0 chr1 9191475 9191539 -188003893 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 655 3129 189 34 52 chr1 9191539 9191708 -188003724 - RLTR22_Mur LTR ERVK -1673 175 2 2 655 247 365 84 11 chr1 9192581 9192772 -188002660 + L1MDb LINE L1 155 359 -6050 2 655 321 329 85 50 chr1 9192969 9193228 -188002204 + L1MDb LINE L1 899 1166 -5243 2 655 2513 215 26 26 chr1 9193576 9194084 -188001348 + MT2A LTR ERVL 1 517 -16 2 655 1102 146 102 5 chr1 9194084 9194290 -188001142 + URR1A DNA MER1_type 1 226 0 2 655 2513 215 26 26 chr1 9194290 9194312 -188001120 + MT2A LTR ERVL 518 531 -2 2 655 375 332 4 106 chr1 9196470 9196726 -187998706 - L1MB7 LINE L1 -87 6097 5868 2 655 497 158 25 8 chr1 9196784 9196905 -187998527 + (TA)n Simple_repeat Simple_repeat 2 124 0 2 655 299 257 8 68 chr1 9196974 9197091 -187998341 - L1MB7 LINE L1 -459 5725 5616 2 655 22 56 0 0 chr1 9197146 9197182 -187998250 + AT_rich Low_complexity Low_complexity 1 36 0 2 655 24 32 0 0 chr1 9197219 9197250 -187998182 + AT_rich Low_complexity Low_complexity 1 31 0 2 655 286 318 45 30 chr1 9198169 9198302 -187997130 - ORR1E LTR MaLR -214 145 11 2 655 450 362 87 30 chr1 9198383 9198682 -187996750 + ORR1E LTR MaLR 44 359 0 2 655 313 309 123 18 chr1 9199870 9199932 -187995500 + MER2 DNA MER2_type 98 167 -178 2 655 2112 177 36 12 chr1 9199932 9200343 -187995089 + MTC LTR MaLR 1 421 0 2 655 313 309 123 18 chr1 9200343 9200451 -187994981 + MER2 DNA MER2_type 168 286 -59 2 655 921 218 165 73 chr1 9201511 9201827 -187993605 - RMER1C Other Other -15 1327 983 2 655 351 0 0 0 chr1 9201859 9201898 -187993534 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 655 210 342 13 52 chr1 9201905 9201982 -187993450 - RSINE1 SINE B4 -32 133 60 2 655 285 247 34 34 chr1 9202628 9202716 -187992716 - ID_B1 SINE B4 -2 222 135 2 655 284 198 41 113 chr1 9202629 9202726 -187992706 - PB1 SINE Alu -2 125 36 2 655 662 286 53 0 chr1 9202877 9203048 -187992384 + B3 SINE B2 1 180 -36 2 655 368 283 0 20 chr1 9203386 9203487 -187991945 + PB1D10 SINE Alu 19 117 0 2 655 1497 224 3 23 chr1 9205023 9205333 -187990099 - MTD LTR MaLR -13 406 103 2 655 651 182 287 11 chr1 9205336 9205608 -187989824 + Lx9 LINE L1 7257 7603 -41 2 655 499 187 18 61 chr1 9205614 9205728 -187989704 - MTD LTR MaLR -302 117 9 2 655 700 289 90 35 chr1 9206055 9206366 -187989066 + ORR1D1 LTR MaLR 46 378 0 2 655 331 240 51 20 chr1 9206319 9206417 -187989015 - ORR1D2 LTR MaLR -2 368 268 2 655 2728 131 19 21 chr1 9206701 9207176 -187988256 + Lx4B LINE L1 5707 6180 -878 2 655 231 292 97 62 chr1 9208346 9208459 -187986973 - PB1D9 SINE Alu -1 119 3 2 655 200 111 0 22 chr1 9208565 9208611 -187986821 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2 655 1089 96 0 0 chr1 9208611 9208757 -187986675 - B1_Mus2 SINE Alu -1 146 1 2 655 1009 260 40 6 chr1 9208976 9209301 -187986131 + RCHARR1 DNA MER1_type 574 909 -65 2 655 246 261 90 11 chr1 9209316 9209405 -187986027 + RCHARR1 DNA MER1_type 879 974 0 2 655 27 29 0 0 chr1 9211420 9211454 -187983978 + AT_rich Low_complexity Low_complexity 1 34 0 2 655 256 194 14 27 chr1 9212190 9212264 -187983168 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 655 1961 225 43 5 chr1 9212807 9213204 -187982228 - MTC LTR MaLR 0 421 10 2 655 1292 102 5 0 chr1 9213732 9213918 -187981514 + B2_Mm1a SINE B2 3 189 -4 2 655 426 278 72 23 chr1 9214078 9214299 -187981133 + L1MB2 LINE L1 5930 6161 -10 2 655 2078 260 20 57 chr1 9214420 9215068 -187980364 - L1_Mur3 LINE L1 -26 5854 5231 2 655 720 239 83 15 chr1 9215162 9215397 -187980035 + Lx8 LINE L1 6795 7036 -660 2 655 315 0 0 0 chr1 9215397 9215432 -187980000 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2 655 446 324 140 33 chr1 9215568 9215700 -187979732 + Lx8 LINE L1 7105 7241 -232 2 655 3246 118 20 31 chr1 9215700 9216209 -187979223 + Lx3B LINE L1 6467 6969 -4 2 655 495 0 0 0 chr1 9216215 9216270 -187979162 + (TAA)n Simple_repeat Simple_repeat 3 57 0 2 655 446 324 140 33 chr1 9216270 9216459 -187978973 + Lx8 LINE L1 7242 7468 -5 2 655 240 305 0 0 chr1 9216762 9216821 -187978611 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 655 392 97 0 16 chr1 9217675 9217738 -187977694 + (TTA)n Simple_repeat Simple_repeat 2 63 0 2 655 415 319 0 0 chr1 9218260 9218401 -187977031 + L1MA4A LINE L1 5789 5929 -374 2 655 8258 127 19 3 chr1 9218810 9219825 -187975607 - Lx2 LINE L1 -115 6882 5860 2 655 208 0 30 30 chr1 9219825 9219858 -187975574 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 655 8258 140 24 5 chr1 9219858 9220347 -187975085 - Lx2 LINE L1 -24 5859 5357 2 655 3582 63 4 15 chr1 9220350 9220816 -187974616 - L1_Mus1 LINE L1 0 6567 6107 2 655 2516 86 0 0 chr1 9220816 9221154 -187974278 + L1_Mus1 LINE L1 5773 6110 -457 2 655 542 152 26 9 chr1 9221154 9221267 -187974165 - Lx2 LINE L1 -514 5363 5249 2 655 14729 58 0 1 chr1 9221620 9223584 -187971848 + L1Md_F2 LINE L1 3625 5586 -297 2 655 8402 29 4 0 chr1 9223584 9224562 -187970870 + L1Md_F2 LINE L1 5587 6568 -14 2 655 22 0 0 0 chr1 9224756 9224778 -187970654 + AT_rich Low_complexity Low_complexity 1 22 0 2 655 3916 92 35 65 chr1 9225110 9225769 -187969663 + RLTR6_Mm LTR ERV1 1 639 -15 2 655 5505 63 20 54 chr1 9225770 9226628 -187968804 + RLTR6-int LTR ERV1 1 829 -6949 2 655 371 287 0 59 chr1 9226622 9226774 -187968658 + MMVL30-int LTR ERV1 391 533 -7023 2 655 6399 52 5 7 chr1 9227122 9227958 -187967474 + MMVL30-int LTR ERV1 772 1605 -2093 2 655 5728 18 6 0 chr1 9227960 9228635 -187966797 + MMVL30-int LTR ERV1 1707 2385 -1313 2 655 8360 47 15 16 chr1 9228636 9229830 -187965602 + MMVL30-int LTR ERV1 2079 3698 0 2 655 3738 96 36 67 chr1 9229830 9230469 -187964963 + RLTR6_Mm LTR ERV1 1 619 -35 2 655 33831 50 0 3 chr1 9230595 9236226 -187959206 + L1Md_T LINE L1 2 5589 -297 2 655 8498 33 0 0 chr1 9236226 9237222 -187958210 + L1Md_T LINE L1 5590 6585 0 2 655 729 58 0 0 chr1 9240506 9240609 -187954823 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 655 5339 126 23 13 chr1 9240688 9241077 -187954355 - L1_Mm LINE L1 -832 5051 4658 2 655 1553 37 5 11 chr1 9241077 9241268 -187954164 + B2_Mm1a SINE B2 1 190 -3 2 655 5339 126 23 13 chr1 9241268 9241798 -187953634 - L1_Mm LINE L1 -1226 4657 4123 2 655 5412 112 0 12 chr1 9241797 9242199 -187953233 + L1_Mus2 LINE L1 5043 5443 -440 2 655 2906 80 32 10 chr1 9242199 9242601 -187952831 + RLTR10A LTR ERVK 1 411 0 2 655 6926 73 14 20 chr1 9242601 9243736 -187951696 + L1_Mus2 LINE L1 5444 6565 -1 2 655 287 217 87 0 chr1 9243796 9243865 -187951567 - Lx2 LINE L1 -378 6619 6545 2 655 321 93 0 0 chr1 9243865 9243919 -187951513 + Lx2 LINE L1 6944 6997 0 2 655 2601 60 25 17 chr1 9244833 9245187 -187950245 + L1_Mus2 LINE L1 6210 6566 0 2 655 187 152 21 21 chr1 9246901 9246948 -187948484 + GA-rich Low_complexity Low_complexity 1 47 0 2 655 225 350 38 0 chr1 9247089 9247169 -187948263 + RSINE1 SINE B4 78 160 -5 2 655 479 16 32 0 chr1 9247493 9247556 -187947876 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 655 444 306 15 0 chr1 9248566 9248700 -187946732 - Lx8 LINE L1 -136 7337 7202 2 655 479 284 29 5 chr1 9249911 9250120 -187945312 - L1_Mur3 LINE L1 -1521 4359 4146 2 655 1139 58 0 0 chr1 9250143 9250280 -187945152 - B1_Mus1 SINE Alu -10 138 2 2 655 3194 53 0 5 chr1 9253745 9254140 -187941292 - MTA_Mm LTR MaLR 0 396 4 2 655 452 194 10 10 chr1 9254242 9254346 -187941086 - L1_Mur3 LINE L1 -2082 3798 3695 2 655 27780 91 1 25 chr1 9254329 9255069 -187940363 - L1_Mus2 LINE L1 -1 6565 5849 2 655 3280 26 39 0 chr1 9255069 9255450 -187939982 + MTA_Mm LTR MaLR 1 396 0 2 655 27780 117 8 22 chr1 9255450 9255972 -187939460 - L1_Mus2 LINE L1 -35 5848 5327 2 655 535 60 35 35 chr1 9255972 9256059 -187939373 - B2_Mm1t SINE B2 -2 191 105 2 655 27780 117 8 22 chr1 9256059 9260306 -187935126 - L1_Mus2 LINE L1 -35 5326 1072 2 655 456 217 0 0 chr1 9260304 9260396 -187935036 - Lx7 LINE L1 -787 6673 6582 2 655 2867 191 13 9 chr1 9260671 9261395 -187934037 + Lx6 LINE L1 5321 6043 -1417 2 655 6283 188 128 28 chr1 9261358 9263373 -187932059 - Lx7 LINE L1 -1429 6267 4054 2 655 1107 224 5 9 chr1 9263373 9263594 -187931838 - MTC LTR MaLR 0 421 202 2 655 321 26 0 0 chr1 9263594 9263632 -187931800 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2 655 968 274 90 34 chr1 9263637 9264015 -187931417 - Lx6 LINE L1 -71 7389 6991 2 655 6243 161 92 50 chr1 9264007 9264205 -187931227 - Lx7 LINE L1 -3010 2870 2683 2 655 414 0 0 0 chr1 9264205 9264251 -187931181 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 655 6243 181 105 36 chr1 9264251 9266683 -187928749 - Lx7 LINE L1 -3198 2682 51 2 655 3700 16 121 0 chr1 9266966 9267406 -187928026 + MT2_Mm LTR ERVL 1 493 0 2 655 25 0 0 0 chr1 9267982 9268007 -187927425 + AT_rich Low_complexity Low_complexity 1 25 0 2 655 491 287 57 51 chr1 9268984 9269160 -187926272 - B3 SINE B2 0 216 40 2 655 447 127 57 6 chr1 9269804 9269963 -187925469 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 2 655 255 174 0 0 chr1 9270014 9270060 -187925372 - ORR1E LTR MaLR 0 421 376 3 655 797 310 101 3 chr1 9270088 9270405 -187925027 + Lx8 LINE L1 6868 7215 -258 3 655 728 289 137 18 chr1 9270641 9271151 -187924281 + L1MA4 LINE L1 5357 5927 -373 3 655 2603 220 213 14 chr1 9271178 9272021 -187923411 + Lx7 LINE L1 6407 7417 -279 3 655 405 0 0 0 chr1 9272031 9272076 -187923356 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 655 333 0 0 0 chr1 9272209 9272246 -187923186 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 655 596 296 6 69 chr1 9272646 9272820 -187922612 - RSINE1 SINE B4 0 165 3 3 655 314 346 53 37 chr1 9273175 9273364 -187922068 - ORR1E LTR MaLR -167 192 1 3 655 273 57 0 0 chr1 9274155 9274190 -187921242 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 655 4255 54 13 0 chr1 9274487 9275043 -187920389 + L1Md_F2 LINE L1 5771 6333 -249 3 655 252 220 0 0 chr1 9275046 9275096 -187920336 - Lx8 LINE L1 -619 6854 6805 3 655 796 277 61 77 chr1 9275126 9276030 -187919402 - L1MC LINE L1 -552 5781 4896 3 655 3522 67 15 4 chr1 9276033 9276496 -187918936 + L1Md_F2 LINE L1 6103 6570 -12 3 655 24 0 0 0 chr1 9276506 9276530 -187918902 + AT_rich Low_complexity Low_complexity 1 24 0 3 655 243 254 29 15 chr1 9276632 9276700 -187918732 + ID4_ SINE ID 2 70 -13 3 655 240 297 61 26 chr1 9276700 9276746 -187918686 + ID_B1 SINE B4 2 119 -105 3 655 243 0 0 0 chr1 9279457 9279484 -187915948 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 3 655 342 0 0 0 chr1 9280895 9280933 -187914499 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 655 209 195 22 44 chr1 9280951 9281042 -187914390 + (TATAA)n Simple_repeat Simple_repeat 1 89 0 3 655 376 259 102 56 chr1 9281833 9282029 -187913403 + B3 SINE B2 5 209 -7 3 655 456 19 0 0 chr1 9283334 9283387 -187912045 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 655 36 94 0 0 chr1 9283977 9284083 -187911349 + AT_rich Low_complexity Low_complexity 1 106 0 3 655 236 382 0 18 chr1 9285854 9285966 -187909466 - B1_Mus2 SINE Alu -36 111 2 3 655 27 0 0 0 chr1 9285981 9286008 -187909424 + AT_rich Low_complexity Low_complexity 1 27 0 3 655 699 24 0 0 chr1 9286131 9286216 -187909216 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 3 655 207 280 0 0 chr1 9286328 9286378 -187909054 + (CTTA)n Simple_repeat Simple_repeat 2 51 0 3 655 23 0 0 0 chr1 9287128 9287151 -187908281 + AT_rich Low_complexity Low_complexity 1 23 0 3 655 369 0 0 0 chr1 9292200 9292241 -187903191 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 655 423 0 0 0 chr1 9292389 9292436 -187902996 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 655 934 320 51 4 chr1 9292452 9292728 -187902704 - B4A SINE B4 0 292 4 3 655 188 267 22 0 chr1 9292732 9292777 -187902655 + MIRb SINE MIR 132 177 -91 3 655 1536 285 67 67 chr1 9292846 9293380 -187902052 - RMER15 LTR ERVL -3 572 39 3 655 1521 53 71 0 chr1 9293645 9293868 -187901564 + L1Md_F3 LINE L1 5317 5586 -297 3 655 8371 32 1 2 chr1 9293869 9294864 -187900568 + L1Md_F3 LINE L1 5588 6581 -3 3 655 293 294 28 0 chr1 9295049 9295158 -187900274 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 3 655 488 277 20 78 chr1 9295640 9295793 -187899639 - ID_B1 SINE B4 -2 222 79 3 655 535 220 20 61 chr1 9295924 9296056 -187899376 - ORR1E LTR MaLR -231 128 1 3 655 574 302 41 70 chr1 9296057 9296299 -187899133 - MTE-int LTR MaLR -67 1513 1279 3 655 24 0 0 0 chr1 9296610 9296634 -187898798 + AT_rich Low_complexity Low_complexity 1 24 0 3 655 5117 36 2 0 chr1 9296647 9297251 -187898181 + L1_Mus1 LINE L1 5961 6565 -2 3 655 28 0 0 0 chr1 9297251 9297279 -187898153 + AT_rich Low_complexity Low_complexity 1 28 0 3 655 447 325 165 8 chr1 9297289 9297531 -187897901 + MLT1H LTR MaLR 56 335 -214 3 655 594 0 0 0 chr1 9297575 9297641 -187897791 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 3 655 290 240 0 0 chr1 9297802 9297852 -187897580 - RSINE1 SINE B4 -103 62 13 3 655 259 288 82 0 chr1 9299539 9299612 -187895820 + ID4 SINE ID 2 80 -3 3 655 450 0 0 0 chr1 9300594 9300644 -187894788 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 655 1281 246 138 6 chr1 9300757 9301113 -187894319 + MTD LTR MaLR 3 405 -14 3 655 6270 42 11 4 chr1 9302190 9302955 -187892477 - L1Md_F3 LINE L1 -1 6583 5814 3 655 2113 129 40 126 chr1 9303073 9303421 -187892011 - RLTR23 LTR ERV1 0 430 105 3 655 537 30 0 0 chr1 9303421 9303488 -187891944 + (GTTTG)n Simple_repeat Simple_repeat 3 69 0 3 655 2113 129 40 126 chr1 9303488 9303589 -187891843 - RLTR23 LTR ERV1 -326 104 20 3 655 2501 185 140 142 chr1 9303589 9304497 -187890935 + RMER17A2 LTR ERVK 1 906 0 3 655 1648 253 62 22 chr1 9304796 9304886 -187890546 + RLTR11A2 LTR ERVK 7 107 -420 3 655 234 0 0 0 chr1 9304886 9304912 -187890520 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 655 1648 253 62 22 chr1 9304912 9305322 -187890110 + RLTR11A2 LTR ERVK 108 526 -1 3 81 4087 214 132 27 chr1 9305701 9306773 -187888659 - ORR1C2-int LTR MaLR -186 1184 1 3 656 836 216 6 60 chr1 9306773 9306955 -187888477 - ORR1C2 LTR MaLR 0 384 213 3 656 3450 60 9 5 chr1 9306956 9307395 -187888037 + L1_Mus1 LINE L1 6127 6567 0 3 656 550 243 33 7 chr1 9307471 9307648 -187887784 - ORR1C2 LTR MaLR -122 262 58 3 656 715 205 4 28 chr1 9307616 9307815 -187887617 - ORR1C2 LTR MaLR -259 135 1 3 656 282 95 0 0 chr1 9308890 9308932 -187886500 + (TCC)n Simple_repeat Simple_repeat 2 43 0 3 656 327 184 87 0 chr1 9308942 9309045 -187886387 - Lx6 LINE L1 -169 7291 7180 3 656 388 130 0 49 chr1 9309053 9309134 -187886298 + L1_Mur3 LINE L1 4975 5051 -829 3 656 300 91 0 0 chr1 9309794 9309838 -187885594 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 656 261 270 167 11 chr1 9309907 9309997 -187885435 + LTR40b LTR ERVL 31 134 -328 3 656 593 327 79 56 chr1 9311446 9311838 -187883594 - MTD LTR MaLR -14 405 5 3 656 718 201 18 55 chr1 9312227 9312390 -187883042 + ORR1D1 LTR MaLR 1 157 -217 3 656 984 304 47 9 chr1 9312397 9312739 -187882693 - Lx5 LINE L1 -190 6860 6506 3 656 742 277 57 44 chr1 9312733 9313031 -187882401 - Lx5 LINE L1 -663 6387 6086 3 656 440 222 254 10 chr1 9313124 9313312 -187882120 + ORR1D1 LTR MaLR 139 372 -2 3 656 672 205 0 0 chr1 9313316 9313438 -187881994 + ORR1D1-int LTR MaLR 18 139 -1231 3 656 3901 206 86 8 chr1 9313455 9314324 -187881108 + ORR1D1-int LTR MaLR 431 1367 -3 3 656 680 178 363 21 chr1 9314327 9314603 -187880829 + ORR1D1 LTR MaLR 1 374 0 3 656 207 0 0 0 chr1 9314807 9314830 -187880602 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 656 1392 135 33 12 chr1 9314984 9315224 -187880208 + Lx LINE L1 6410 6654 0 3 656 7611 143 39 19 chr1 9315300 9316857 -187878575 - Lx2 LINE L1 0 6997 5410 3 656 574 336 63 4 chr1 9316883 9317152 -187878280 - Lx8 LINE L1 -365 7108 6824 3 656 320 200 61 24 chr1 9317173 9317255 -187878177 + MT2B2 LTR ERVL 156 240 -344 3 656 546 246 17 0 chr1 9317197 9317315 -187878117 + B1_Mm SINE Alu 26 145 -2 3 656 619 319 0 9 chr1 9317317 9317532 -187877900 - Lx8 LINE L1 -681 6792 6580 3 656 2164 189 46 9 chr1 9317556 9317993 -187877439 + Lx LINE L1 6189 6641 -13 3 656 535 259 43 7 chr1 9318030 9318170 -187877262 + B1_Mur1 SINE Alu 4 148 -1 3 656 944 126 23 0 chr1 9318231 9318405 -187877027 + (GA)n Simple_repeat Simple_repeat 2 179 0 3 656 696 190 18 0 chr1 9318410 9318573 -187876859 + GA-rich Low_complexity Low_complexity 2 167 0 3 656 1023 106 0 0 chr1 9318575 9318726 -187876706 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 3 656 18108 166 21 11 chr1 9318906 9322241 -187873191 - L1VL4 LINE L1 -928 4955 1591 3 656 3625 62 4 8 chr1 9322241 9322710 -187872722 - L1_Mus2 LINE L1 0 6566 6100 3 656 18108 133 13 22 chr1 9322710 9323881 -187871551 - L1VL4 LINE L1 -4293 1590 433 3 656 263 164 204 4 chr1 9324531 9324618 -187870814 - Lx5 LINE L1 -8 7050 6930 3 656 357 299 0 0 chr1 9324739 9324826 -187870606 - PB1D10 SINE Alu -28 89 3 3 656 213 292 61 101 chr1 9325142 9325241 -187870191 - PB1D10 SINE Alu -20 97 3 3 656 1742 296 47 26 chr1 9326291 9327013 -187868419 + Lx7 LINE L1 6555 7291 -405 3 656 180 0 0 0 chr1 9327031 9327051 -187868381 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 656 263 286 0 0 chr1 9327067 9327165 -187868267 + T-rich Low_complexity Low_complexity 1 98 0 3 656 531 244 90 9 chr1 9327811 9328022 -187867410 + Lx7 LINE L1 5642 5869 -1827 3 656 2715 55 9 6 chr1 9328182 9328527 -187866905 - ORR1A1 LTR MaLR 0 346 1 3 656 454 301 43 43 chr1 9328612 9328796 -187866636 + Lx8 LINE L1 6197 6380 -1093 3 656 342 318 114 27 chr1 9328962 9329224 -187866208 + Lx8 LINE L1 7188 7472 -1 3 656 242 339 0 84 chr1 9329704 9329775 -187865657 + RSINE1 SINE B4 5 69 -96 3 656 969 311 76 25 chr1 9329835 9330310 -187865122 - RMER5 LTR ERV1 -21 513 15 3 656 321 26 0 0 chr1 9330361 9330399 -187865033 + (CTG)n Simple_repeat Simple_repeat 1 38 0 3 656 20040 139 10 6 chr1 9330828 9333990 -187861442 - L1_Mus3 LINE L1 -9 6629 3482 3 656 4068 76 0 0 chr1 9333990 9334519 -187860913 - L1Md_T LINE L1 0 6582 6054 3 656 20040 159 14 24 chr1 9334519 9337066 -187858366 - L1_Mus3 LINE L1 -2402 3484 943 3 656 2689 71 41 55 chr1 9337066 9337483 -187857949 - RLTR10A LTR ERVK 0 411 1 3 656 5024 83 6 58 chr1 9337483 9337857 -187857575 - L1_Mus3 LINE L1 -5715 942 566 3 656 246 98 24 0 chr1 9337858 9337899 -187857533 - L1_Mus3 LINE L1 -6260 397 356 3 656 2558 256 92 24 chr1 9337898 9338302 -187857130 - Lx7 LINE L1 -822 6874 6426 3 656 1385 63 5 5 chr1 9338302 9338494 -187856938 + L1Md_A LINE L1 6391 6582 0 3 656 2558 256 92 24 chr1 9338494 9338885 -187856547 - Lx7 LINE L1 -1271 6425 6025 3 656 867 96 52 0 chr1 9338901 9339037 -187856395 - B1_Mus1 SINE Alu 0 148 6 3 656 401 227 92 78 chr1 9338903 9339056 -187856376 - B4 SINE B4 -69 223 69 3 656 8037 195 79 40 chr1 9339056 9340016 -187855416 - Lx7 LINE L1 -1715 5981 4922 3 656 2307 120 14 65 chr1 9340016 9340445 -187854987 - RLTR9E LTR ERVK -2 407 1 3 656 8037 194 72 41 chr1 9340445 9341841 -187853591 - Lx7 LINE L1 -959 4921 3545 3 656 1809 167 29 14 chr1 9341842 9342188 -187853244 - RLTR15 LTR ERVK 0 359 9 3 656 222 191 0 0 chr1 9342338 9342385 -187853047 + (CTG)n Simple_repeat Simple_repeat 3 49 0 3 656 2034 216 272 24 chr1 9342390 9342766 -187852666 - Lx7 LINE L1 -2416 3464 3038 3 656 5036 68 20 1 chr1 9342766 9343425 -187852007 + L1_Mus2 LINE L1 5896 6566 0 3 656 2034 216 272 24 chr1 9343425 9344119 -187851313 - Lx7 LINE L1 -2843 3037 2129 3 656 256 315 84 67 chr1 9344138 9344257 -187851175 + RMER13A LTR ERVK 14 134 -726 3 656 320 278 68 17 chr1 9344672 9344789 -187850643 - MIRb SINE MIR -118 150 28 3 656 1783 196 87 58 chr1 9344800 9345374 -187850058 - Lx7 LINE L1 -3753 2127 1537 3 656 1906 222 135 16 chr1 9345380 9346202 -187849230 + L1_Mur3 LINE L1 301 1220 -6508 3 656 2512 188 72 8 chr1 9346206 9346845 -187848587 + L1_Mur3 LINE L1 3347 4026 -1854 3 656 4106 179 71 8 chr1 9347415 9348405 -187847027 + L1_Mur3 LINE L1 4024 5075 -805 3 656 408 248 17 8 chr1 9348923 9349041 -187846391 + L1_Mur3 LINE L1 5103 5221 -659 3 656 3085 78 13 2 chr1 9349035 9349508 -187845924 + Lx3_Mus LINE L1 3035 3512 -2374 4 656 11713 78 14 17 chr1 9349506 9351850 -187843582 + Lx3_Mus LINE L1 4200 6538 -471 4 656 2597 177 38 30 chr1 9351912 9352436 -187842996 + RMER5 LTR ERV1 7 534 0 4 656 4375 106 39 80 chr1 9355267 9356110 -187839322 - RMER17D2 LTR ERVK 0 809 1 4 656 3476 82 47 6 chr1 9356189 9356390 -187839042 - Lx3_Mus LINE L1 -888 6121 5922 4 656 302 0 0 26 chr1 9356390 9356429 -187839003 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 4 656 16869 126 29 114 chr1 9356429 9357130 -187838302 - Lx3_Mus LINE L1 -1088 5921 5204 4 656 4993 92 75 100 chr1 9357130 9358046 -187837386 - RLTR13B1 LTR ERVK 0 893 1 4 656 16869 161 15 201 chr1 9358046 9361946 -187833486 - Lx3_Mus LINE L1 -680 5203 2364 4 656 4526 133 57 9 chr1 9361946 9362718 -187832714 - RMER17D2 LTR ERVK 0 809 1 4 656 16869 140 60 113 chr1 9362718 9364567 -187830865 - Lx3_Mus LINE L1 -3520 2363 417 4 656 1958 194 23 0 chr1 9364596 9364941 -187830491 + RMER15 LTR ERVL 222 574 -1 4 656 604 254 118 5 chr1 9364967 9365153 -187830279 + ORR1C2 LTR MaLR 176 382 -2 4 656 783 237 5 23 chr1 9365579 9365795 -187829637 - Lx2B LINE L1 -7 6993 6782 4 656 1396 181 8 4 chr1 9365793 9366042 -187829390 + Lx2B LINE L1 6532 6781 -219 4 656 552 272 90 149 chr1 9367052 9367509 -187827923 + RLTR23 LTR ERV1 1 430 0 4 656 1258 288 8 80 chr1 9368043 9368533 -187826899 + Lx8 LINE L1 6350 6804 -669 4 656 3093 57 2 0 chr1 9368680 9369084 -187826348 + L1Md_F2 LINE L1 5182 5586 -297 4 656 7661 62 10 6 chr1 9369084 9370076 -187825356 + L1Md_F2 LINE L1 5587 6582 0 4 656 292 263 26 13 chr1 9370082 9370159 -187825273 - RMER12 LTR ERVK -144 1178 1101 4 656 4350 20 0 2 chr1 9370306 9370800 -187824632 + MT2_Mm LTR ERVL 1 493 0 4 656 6062 81 7 7 chr1 9370895 9371741 -187823691 - RLTR22_Mus LTR ERVK -962 846 1 4 656 368 207 37 0 chr1 9371743 9371825 -187823607 + Lx8 LINE L1 6806 6890 -583 4 656 2983 171 8 10 chr1 9371887 9372401 -187823031 - RLTR11A LTR ERVK -15 513 1 4 656 2171 257 53 14 chr1 9372972 9373541 -187821891 + ORR1D-int LTR MaLR 425 1015 -355 4 656 291 292 39 39 chr1 9373940 9374093 -187821339 - RLTR12B LTR ERVK -9 519 367 4 656 266 225 12 0 chr1 9374538 9374618 -187820814 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 656 1631 97 96 7 chr1 9374984 9375255 -187820177 + RLTR10A LTR ERVK 117 411 0 4 656 411 186 38 194 chr1 9375515 9375675 -187819757 + L1VL1 LINE L1 221 355 -6067 4 656 310 21 0 41 chr1 9375681 9375730 -187819702 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 656 2566 198 35 57 chr1 9375736 9376681 -187818751 + L1_Mus1 LINE L1 244 1173 -5465 4 656 1659 26 0 0 chr1 9376681 9376873 -187818559 + B2_Mm1a SINE B2 2 193 0 4 656 28583 103 9 4 chr1 9376873 9382237 -187813195 + L1_Mus1 LINE L1 1174 6565 -2 4 656 34 0 0 0 chr1 9382237 9382271 -187813161 + AT_rich Low_complexity Low_complexity 1 34 0 4 656 29 0 0 0 chr1 9382331 9382360 -187813072 + AT_rich Low_complexity Low_complexity 1 29 0 4 656 7545 177 47 41 chr1 9382360 9384320 -187811112 + L1_Mur3 LINE L1 1756 3727 -2153 4 656 383 365 0 0 chr1 9384828 9384932 -187810500 + PB1D10 SINE Alu 7 110 -7 4 656 4716 40 5 0 chr1 9385072 9385644 -187809788 - L1Md_F3 LINE L1 -1 6583 6009 4 656 3778 59 2 6 chr1 9386024 9386504 -187808928 + L1_Mus1 LINE L1 6090 6567 0 4 656 4501 125 55 29 chr1 9387508 9388297 -187807135 + RMER17D2 LTR ERVK 1 809 0 4 656 433 314 81 93 chr1 9389831 9390154 -187805278 - ORR1E LTR MaLR -40 319 1 4 656 6531 150 76 12 chr1 9390597 9391752 -187803680 + Lx2 LINE L1 5769 6997 0 4 656 29594 70 48 12 chr1 9391760 9396765 -187798667 + L1Md_F3 LINE L1 405 5586 -297 4 656 7981 39 4 6 chr1 9396765 9397751 -187797681 + L1Md_F3 LINE L1 5587 6570 -14 4 656 4768 173 36 6 chr1 9397856 9398695 -187796737 - RMER13B LTR ERVK -44 864 1 4 656 783 169 17 57 chr1 9399628 9399804 -187795628 + ORR1A3 LTR MaLR 1 169 -157 4 656 4932 122 35 4 chr1 9399854 9401389 -187794043 + L1_Mus1 LINE L1 468 2052 -3831 4 656 12060 100 2 2 chr1 9401387 9403939 -187791493 + L1_Mus1 LINE L1 4009 6560 -7 4 656 712 138 8 8 chr1 9403939 9404070 -187791362 + ORR1A3 LTR MaLR 140 270 -59 4 656 207 0 0 0 chr1 9404072 9404095 -187791337 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 656 18586 149 95 20 chr1 9404097 9410317 -187785115 - Lx3_Mus LINE L1 -4 7005 48 4 656 331 47 0 0 chr1 9410313 9410356 -187785076 - L1_Mur2 LINE L1 -475 5402 5360 4 656 405 0 0 0 chr1 9410358 9410403 -187785029 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 656 951 112 0 0 chr1 9410404 9410538 -187784894 - B1_Mus1 SINE Alu -12 136 3 4 656 438 106 0 15 chr1 9410538 9410605 -187784827 + ORR1A3 LTR MaLR 253 318 -8 4 656 239 279 80 23 chr1 9411584 9411672 -187783760 + MER94 DNA AcHobo 31 123 -11 4 656 401 311 5 38 chr1 9412598 9412782 -187782650 + GA-rich Low_complexity Low_complexity 1 178 0 4 656 1053 216 35 48 chr1 9412830 9413141 -187782291 - Lx7 LINE L1 0 7696 7390 4 656 5660 205 80 60 chr1 9413645 9415613 -187779819 - Lx7 LINE L1 -453 7243 5278 4 656 1161 88 0 0 chr1 9415613 9415760 -187779672 - B1_Mus1 SINE Alu 0 148 2 4 656 3856 172 86 72 chr1 9415760 9416159 -187779273 - Lx7 LINE L1 -603 5277 4847 4 656 232 263 58 78 chr1 9416159 9416262 -187779170 - RMER12 LTR ERVK -8 1314 1214 4 656 689 257 12 18 chr1 9416266 9416533 -187778899 - RMER16-int LTR ERVK -3570 1836 1655 4 656 2526 182 7 19 chr1 9416555 9417144 -187778288 - RMER16-int LTR ERVK -2567 2839 2303 4 656 1630 211 22 42 chr1 9417139 9417544 -187777888 - RMER16-int LTR ERVK -4656 2750 2354 4 656 1200 141 15 5 chr1 9417565 9417765 -187777667 - RMER16-int LTR ERVK -4116 1290 1089 4 656 2113 159 134 39 chr1 9417770 9418286 -187777146 - RMER16-int LTR ERVK -4587 819 255 4 656 255 266 12 25 chr1 9418614 9418695 -187776737 - RMER16-int LTR ERVK -7948 269 190 4 656 271 331 7 7 chr1 9418784 9418924 -187776508 - RNERVK23-int LTR ERVK -7765 452 313 4 656 521 202 0 9 chr1 9419599 9419704 -187775728 - Lx7 LINE L1 -4033 1847 1744 4 656 2554 232 53 29 chr1 9419709 9420393 -187775039 - Lx7 LINE L1 -6731 997 298 4 656 2478 101 3 72 chr1 9420531 9420917 -187774515 + RLTR10D LTR ERVK 1 359 0 4 656 25 31 0 0 chr1 9421122 9421154 -187774278 + AT_rich Low_complexity Low_complexity 1 32 0 4 656 2306 94 19 3 chr1 9421307 9421628 -187773804 - ORR1A3 LTR MaLR 0 326 1 4 656 6013 176 19 27 chr1 9421628 9423144 -187772288 - ORR1A3-int LTR MaLR -191 1772 469 4 656 1029 112 47 0 chr1 9423143 9423313 -187772119 - ORR1A3-int LTR MaLR -1785 178 1 4 656 1924 115 27 52 chr1 9423317 9423646 -187771786 - ORR1A3 LTR MaLR -8 321 1 4 656 325 279 145 4 chr1 9424225 9424473 -187770959 + L1MA6 LINE L1 6017 6299 -1 4 656 303 49 0 0 chr1 9425982 9426023 -187769409 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 4 656 1648 236 48 147 chr1 9426787 9427393 -187768039 + RLTR1D LTR ERV1 60 605 0 4 656 306 140 0 0 chr1 9428579 9428629 -187766803 + RLTR19-int LTR ERVK 1046 1095 -4427 4 656 513 84 0 0 chr1 9428911 9428982 -187766450 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 656 256 100 25 0 chr1 9430875 9430915 -187764517 + RLTR19-int LTR ERVK 1818 1858 -3664 4 656 27 29 0 0 chr1 9430931 9430965 -187764467 + AT_rich Low_complexity Low_complexity 1 34 0 4 656 33 43 0 0 chr1 9431069 9431116 -187764316 + AT_rich Low_complexity Low_complexity 1 47 0 4 656 313 242 0 100 chr1 9431208 9431318 -187764114 + RLTR19-int LTR ERVK 1870 1968 -3554 4 656 762 185 98 147 chr1 9431319 9431681 -187763751 + RLTR19-int LTR ERVK 1929 2510 -3627 4 656 180 259 0 49 chr1 9431681 9431742 -187763690 + L3 LINE CR1 2071 2128 -2361 4 656 617 221 78 57 chr1 9431760 9432005 -187763427 + RLTR19-int LTR ERVK 2580 2829 -3308 4 656 4271 128 60 16 chr1 9432005 9432765 -187762667 + RMER17D2 LTR ERVK 1 794 -15 4 656 207 100 0 0 chr1 9432948 9432978 -187762454 + (T)n Simple_repeat Simple_repeat 1 30 0 4 656 638 76 104 9 chr1 9432983 9433089 -187762343 - B1_Mus1 SINE Alu 0 148 33 4 656 284 209 61 81 chr1 9433018 9433117 -187762315 - RLTR25B LTR ERVK -520 508 412 4 656 320 239 0 0 chr1 9433262 9433329 -187762103 + RLTR19-int LTR ERVK 3124 3190 -2947 4 656 1622 183 63 98 chr1 9433508 9434077 -187761355 + RLTR19-int LTR ERVK 3413 3961 -2176 4 656 8054 46 0 1 chr1 9434211 9435637 -187759795 - L1Md_F2 LINE L1 0 6582 5158 4 656 6794 55 11 8 chr1 9435671 9435856 -187759576 + L1_Mus1 LINE L1 5664 5848 -719 4 656 6342 63 11 0 chr1 9435856 9436655 -187758777 - RLTR13C2 LTR ERVK 0 808 1 4 10 6794 55 11 8 chr1 9436655 9437369 -187758063 + L1_Mus1 LINE L1 5849 6566 -1 4 657 305 318 13 132 chr1 9437699 9437851 -187757581 - MTEa LTR MaLR -6 373 240 4 657 592 208 231 6 chr1 9437938 9438107 -187757325 + B3 SINE B2 3 209 -7 4 657 225 254 59 72 chr1 9438506 9438727 -187756705 + L1MC LINE L1 2738 2955 -3191 4 657 1223 48 0 0 chr1 9438900 9439046 -187756386 + B1_Mus1 SINE Alu 3 148 0 4 657 5045 141 19 45 chr1 9439048 9440588 -187754844 + L1VL4 LINE L1 512 1920 -1897 4 657 354 384 60 18 chr1 9441841 9442008 -187753424 + MER58B DNA MER1_type 1 174 -167 4 657 7542 104 22 16 chr1 9442371 9443640 -187751792 + MusHAL1 LINE L1 800 2076 -636 4 657 5249 44 0 3 chr1 9443640 9444275 -187751157 + L1Md_F2 LINE L1 5948 6580 -2 4 657 5794 151 8 102 chr1 9444275 9444577 -187750855 + L1_Mm LINE L1 3281 3472 -2411 4 657 733 224 34 142 chr1 9444582 9444905 -187750527 - RLTRETN_Mm LTR ERVK -23 299 12 4 657 7458 118 3 8 chr1 9444923 9446091 -187749341 + L1_Mm LINE L1 3473 4634 -1249 4 657 494 174 0 9 chr1 9446091 9446201 -187749231 + L1_Mus3 LINE L1 6530 6638 0 4 657 183 80 0 0 chr1 9446209 9446234 -187749198 + (GGA)n Simple_repeat Simple_repeat 3 27 0 4 657 28 29 0 0 chr1 9446317 9446352 -187749080 + AT_rich Low_complexity Low_complexity 1 35 0 4 657 1231 249 90 18 chr1 9446813 9447156 -187748276 + ORR1D2 LTR MaLR 3 370 0 4 657 744 296 130 12 chr1 9448193 9448532 -187746900 - MTE2a LTR MaLR 0 379 1 4 657 394 250 0 20 chr1 9448532 9448634 -187746798 - MTE2a-int LTR MaLR 0 1580 1481 4 657 631 128 39 0 chr1 9448750 9448852 -187746580 + U6 snRNA snRNA 1 106 -1 4 657 2737 199 64 0 chr1 9448852 9449365 -187746067 + Lx5 LINE L1 6502 7047 -3 4 657 895 337 29 63 chr1 9449370 9449753 -187745679 - MTE2a-int LTR MaLR -352 1228 859 4 657 419 268 17 43 chr1 9449838 9449954 -187745478 - MTE2a-int LTR MaLR -1179 401 289 4 657 2621 216 21 44 chr1 9449954 9450631 -187744801 + RLTR22_Mur LTR ERVK 1 661 -1187 4 657 2050 93 16 0 chr1 9450639 9450952 -187744480 - MusHAL1 LINE L1 -2 2710 2393 4 657 5743 145 43 3 chr1 9450953 9451324 -187744108 - L1_Mur1 LINE L1 -2508 3378 3006 4 657 522 0 0 0 chr1 9451324 9451382 -187744050 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 4 657 5743 145 43 3 chr1 9451382 9452024 -187743408 - L1_Mur1 LINE L1 -2881 3005 2324 4 657 431 333 26 7 chr1 9452118 9452272 -187743160 - MTE2a LTR MaLR -204 175 19 4 657 27 49 0 0 chr1 9452415 9452456 -187742976 + AT_rich Low_complexity Low_complexity 1 41 0 4 657 243 0 0 0 chr1 9452596 9452623 -187742809 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 657 275 293 82 23 chr1 9452778 9452949 -187742483 + L1M5 LINE L1 5530 5710 -469 4 657 706 178 35 71 chr1 9453424 9453593 -187741839 + B2_Mm2 SINE B2 21 183 -12 4 657 981 319 144 16 chr1 9453783 9453967 -187741465 - Lx8 LINE L1 -6 7467 7250 4 657 405 0 0 0 chr1 9453967 9454012 -187741420 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 657 981 319 144 16 chr1 9454012 9454438 -187740994 - Lx8 LINE L1 -224 7249 6781 4 657 2670 97 11 3 chr1 9456488 9456870 -187738562 - Lx3B LINE L1 -3 6970 6586 4 657 2000 136 16 12 chr1 9456870 9456882 -187738550 - Lx3B LINE L1 -411 6562 6551 4 657 2269 58 7 0 chr1 9456882 9457174 -187738258 - L1_Mus1 LINE L1 0 6567 6274 5 657 2000 136 16 12 chr1 9457174 9457481 -187737951 - Lx3B LINE L1 -423 6550 6242 4 657 4884 94 7 30 chr1 9457476 9458102 -187737330 + Lx3B LINE L1 5179 5801 -85 5 657 3654 82 14 39 chr1 9458102 9458663 -187736769 + L1_Mus3 LINE L1 6092 6638 0 5 657 4884 95 1 31 chr1 9458663 9459133 -187736299 + Lx3B LINE L1 5798 6248 -725 5 657 945 143 49 2 chr1 9459259 9459442 -187735990 - MTC-int LTR MaLR -1055 203 10 5 657 1911 251 38 132 chr1 9459445 9460441 -187734991 - RMER17B LTR ERVK -4 904 2 5 657 1621 157 97 7 chr1 9460463 9460751 -187734681 - MTC LTR MaLR 0 421 108 5 657 1046 166 20 30 chr1 9460785 9460866 -187734566 - Lx6 LINE L1 -10 7450 7372 5 657 3119 58 5 2 chr1 9460866 9461261 -187734171 + MTA_Mm LTR MaLR 1 396 0 5 657 1046 166 20 30 chr1 9461261 9461378 -187734054 - Lx6 LINE L1 -89 7371 7254 5 657 1045 202 18 5 chr1 9461386 9461605 -187733827 + Lx6 LINE L1 6656 6877 -583 5 657 663 0 35 0 chr1 9461605 9461692 -187733740 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 657 256 100 0 24 chr1 9461693 9461734 -187733698 + Lx7 LINE L1 6924 6963 -733 5 657 573 74 0 47 chr1 9461735 9461820 -187733612 - MTC LTR MaLR -340 81 1 5 657 24 0 0 0 chr1 9463075 9463099 -187732333 + AT_rich Low_complexity Low_complexity 1 24 0 5 657 1958 70 82 20 chr1 9463489 9463781 -187731651 - MusHAL1 LINE L1 -966 1746 1437 5 657 5280 91 4 21 chr1 9463776 9463805 -187731627 - MusHAL1 LINE L1 -543 2169 2144 5 657 183 42 0 0 chr1 9463805 9463829 -187731603 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 657 5280 91 4 21 chr1 9463829 9464593 -187730839 - MusHAL1 LINE L1 -569 2143 1390 5 657 755 136 19 25 chr1 9464594 9464753 -187730679 - L1_Rod LINE L1 -4124 1723 1566 5 657 414 234 89 49 chr1 9464753 9464978 -187730454 + RMER17C LTR ERVK 76 309 -101 5 657 3568 214 43 58 chr1 9464989 9465901 -187729531 - RMER13B LTR ERVK -5 903 6 5 657 423 0 0 0 chr1 9465901 9465948 -187729484 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 657 1174 275 10 20 chr1 9465948 9466245 -187729187 - L1_Rod LINE L1 -6829 343 50 5 657 261 83 0 0 chr1 9466980 9467016 -187728416 + (CCCTAA)n Simple_repeat Simple_repeat 5 40 0 5 657 3647 53 40 0 chr1 9467281 9467737 -187727695 + MT2C_Mm LTR ERVL 1 474 -1 5 657 252 211 0 0 chr1 9468489 9468541 -187726891 - L1_Mur2 LINE L1 -2336 3541 3490 5 657 4524 163 58 16 chr1 9468541 9469891 -187725541 + L1_Mur1 LINE L1 206 1717 -4169 5 657 4828 58 0 0 chr1 9469888 9470490 -187724942 - L1Md_T LINE L1 -162 6420 5819 5 657 1178 73 0 0 chr1 9470490 9470654 -187724778 + L1Md_A LINE L1 6419 6582 0 5 657 4814 133 20 38 chr1 9470654 9471625 -187723807 + L1_Mur1 LINE L1 1706 2796 -3081 5 657 6030 113 25 20 chr1 9471625 9472588 -187722844 + Lx3A LINE L1 6002 6969 -12 5 657 207 0 0 0 chr1 9472588 9472611 -187722821 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 5 657 6030 113 25 20 chr1 9472611 9472623 -187722809 + Lx3A LINE L1 6970 6981 0 5 657 4637 196 126 49 chr1 9472623 9473000 -187722432 + L1_Mur1 LINE L1 2797 3158 -2719 5 657 32355 88 8 1 chr1 9473003 9478172 -187717260 + L1Md_A LINE L1 422 5586 -297 5 657 7918 55 3 4 chr1 9478172 9479166 -187716266 + L1Md_F2 LINE L1 5587 6579 -3 5 657 32355 73 7 1 chr1 9479166 9479182 -187716250 + L1Md_A LINE L1 5587 5603 -280 5 657 9528 104 10 20 chr1 9479167 9480404 -187715028 + Lx3B LINE L1 3155 4391 -1495 5 657 1121 70 0 0 chr1 9480404 9480547 -187714885 + B1_Mus1 SINE Alu 2 144 -4 5 657 428 0 19 0 chr1 9480549 9480601 -187714831 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 5 657 9528 104 10 20 chr1 9480601 9480888 -187714544 + Lx3B LINE L1 4392 4666 -1220 5 657 21 107 0 0 chr1 9480891 9480975 -187714457 + AT_rich Low_complexity Low_complexity 1 84 0 5 657 1417 57 17 0 chr1 9481371 9481548 -187713884 + B2_Mm2 SINE B2 2 181 -14 5 657 195 42 0 0 chr1 9481551 9481575 -187713857 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 657 13975 87 13 13 chr1 9481695 9483578 -187711854 - L1VL2 LINE L1 -627 2988 1094 5 657 1843 102 31 22 chr1 9483578 9483897 -187711535 - RLTRETN_Mm LTR ERVK 0 322 1 5 657 13975 98 6 39 chr1 9483897 9484712 -187710720 - L1VL2 LINE L1 -2522 1093 312 5 657 7338 119 45 20 chr1 9484713 9484955 -187710477 + Lx3B LINE L1 4651 4888 -998 5 657 4531 42 9 0 chr1 9484955 9485508 -187709924 - L1Md_F3 LINE L1 -14 6570 6013 5 657 8706 117 31 24 chr1 9485508 9487560 -187707872 + Lx3B LINE L1 4889 6969 -4 5 657 405 0 0 0 chr1 9487569 9487614 -187707818 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 657 629 279 104 72 chr1 9487651 9488358 -187707074 - L1_Mur3 LINE L1 -2406 3474 2729 5 657 491 291 4 140 chr1 9488358 9488586 -187706846 - B3A SINE B2 0 198 2 5 657 629 279 104 72 chr1 9488586 9488713 -187706719 - L1_Mur3 LINE L1 -3152 2728 2613 5 657 2586 179 56 36 chr1 9490005 9490562 -187704870 - RLTR12A LTR ERVK 0 568 1 5 657 1353 119 32 14 chr1 9490791 9491012 -187704420 - URR1B DNA MER1_type 0 225 1 5 657 303 328 130 27 chr1 9491709 9492001 -187703431 - L1MDa LINE L1 -4632 2001 1680 5 657 626 329 47 17 chr1 9493410 9493642 -187701790 + B4A SINE B4 6 244 -48 5 657 11468 78 44 4 chr1 9493676 9494583 -187700849 - L1VL4 LINE L1 -957 2602 1669 5 657 189 0 0 0 chr1 9494583 9494604 -187700828 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 657 11468 100 30 8 chr1 9494604 9495873 -187699559 - L1VL4 LINE L1 -1891 1668 363 5 657 256 167 12 49 chr1 9495901 9495983 -187699449 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 5 657 483 63 0 0 chr1 9496008 9496071 -187699361 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 5 657 303 248 128 0 chr1 9496094 9496227 -187699205 - L1_Mur3 LINE L1 -4281 1599 1450 5 657 237 159 0 0 chr1 9496467 9496511 -187698921 + L1M4c LINE L1 1568 1611 -4773 5 657 2967 31 20 0 chr1 9496548 9496898 -187698534 - IAPEY2_LTR LTR ERVK 0 357 1 5 657 1125 95 0 0 chr1 9496961 9497108 -187698324 - B1_Mus1 SINE Alu 0 148 2 5 657 477 100 319 26 chr1 9497126 9497239 -187698193 - B2_Mm2 SINE B2 -3 192 47 5 657 1167 136 11 0 chr1 9497311 9497488 -187697944 - B2_Mm1t SINE B2 -14 179 1 5 657 360 0 0 0 chr1 9498596 9498636 -187696796 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 657 259 370 105 80 chr1 9498681 9498881 -187696551 + B4 SINE B4 88 292 0 5 657 215 214 0 0 chr1 9498889 9498931 -187696501 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 657 234 244 69 23 chr1 9500483 9500613 -187694819 + L1MB8 LINE L1 6042 6177 -1 1 657 267 31 0 0 chr1 9501360 9501392 -187694040 + (TTTTA)n Simple_repeat Simple_repeat 5 36 0 2 657 434 202 82 55 chr1 9501451 9501539 -187693893 + PB1D9 SINE Alu 7 101 -19 3 657 336 103 0 0 chr1 9501539 9501597 -187693835 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 4 657 434 202 82 55 chr1 9501597 9501618 -187693814 + PB1D9 SINE Alu 102 119 -1 3 657 1065 115 0 0 chr1 9502012 9502160 -187693272 + B1_Mus1 SINE Alu 1 148 0 5 657 516 298 120 20 chr1 9502236 9502685 -187692747 + Charlie7 DNA MER1_type 1630 2123 -489 6 657 2506 156 96 12 chr1 9502916 9503397 -187692035 - RMER1B Other Other -2 1064 544 7 657 5053 138 20 7 chr1 9504685 9505466 -187689966 + Lx4A LINE L1 6281 7029 -29 8 657 1090 44 0 0 chr1 9505967 9506104 -187689328 + L1_Mus1 LINE L1 6430 6566 -1 9 657 24 0 0 0 chr1 9506104 9506128 -187689304 + AT_rich Low_complexity Low_complexity 1 24 0 1 657 2383 163 4 38 chr1 9506166 9506638 -187688794 + RMER6B LTR ERVK 1 456 -5 1 657 1456 264 103 32 chr1 9506678 9506710 -187688722 - L1_Mur3 LINE L1 -7048 664 634 1 657 582 15 0 0 chr1 9506710 9506777 -187688655 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1 657 1456 264 103 32 chr1 9506777 9507070 -187688362 - L1_Mur3 LINE L1 -7079 633 312 1 657 2040 175 64 22 chr1 9507070 9507474 -187687958 - MTC LTR MaLR 0 421 1 1 657 1456 264 103 32 chr1 9507474 9507731 -187687701 - L1_Mur3 LINE L1 -7401 311 41 1 657 235 143 46 31 chr1 9507732 9507797 -187687635 - Lx9 LINE L1 -1406 6238 6173 1 657 1368 248 159 33 chr1 9507830 9507912 -187687520 - ORR1E-int LTR MaLR -894 686 592 1 657 1400 79 32 0 chr1 9507912 9508101 -187687331 - B2_Mm2 SINE B2 0 195 1 1 657 1368 248 159 33 chr1 9508101 9508601 -187686831 - ORR1E-int LTR MaLR -989 591 30 1 657 548 82 0 23 chr1 9508633 9508720 -187686712 - B1_Mur4 SINE Alu 0 150 66 1 657 920 266 83 24 chr1 9508750 9509089 -187686343 - ORR1E LTR MaLR 0 359 1 1 657 268 310 86 0 chr1 9509167 9509283 -187686149 - L1M5 LINE L1 -869 5575 5450 1 657 1010 255 40 0 chr1 9509841 9510088 -187685344 - Lx6 LINE L1 0 7460 7204 2 657 6042 85 19 93 chr1 9510114 9511079 -187684353 + RLTR13B1 LTR ERVK 1 893 0 2 657 876 272 19 7 chr1 9511103 9511381 -187684051 - Lx6 LINE L1 -732 6728 6230 2 657 1234 271 64 25 chr1 9511385 9511824 -187683608 + Lx9 LINE L1 5649 6104 -1540 2 657 5090 109 27 37 chr1 9511965 9512438 -187682994 - L1_Mur1 LINE L1 -36 5850 5369 2 657 353 81 0 16 chr1 9512438 9512501 -187682931 + (TTG)n Simple_repeat Simple_repeat 2 63 0 2 657 5090 109 27 37 chr1 9512501 9512514 -187682918 - L1_Mur1 LINE L1 -518 5368 5368 2 657 1181 41 7 0 chr1 9512514 9512659 -187682773 - B1_Mm SINE Alu -1 146 1 2 657 5090 109 27 37 chr1 9512659 9512986 -187682446 - L1_Mur1 LINE L1 -518 5368 5044 2 657 540 161 11 0 chr1 9514244 9514337 -187681095 + B3A SINE B2 7 100 -98 2 657 3533 112 46 12 chr1 9514339 9515124 -187680308 - RLTR13D2 LTR ERVK 0 1023 1 2 657 224 209 0 0 chr1 9515164 9515207 -187680225 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 657 25 31 0 0 chr1 9515207 9515239 -187680193 + AT_rich Low_complexity Low_complexity 1 32 0 3 657 216 0 0 0 chr1 9515326 9515350 -187680082 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 3 657 455 220 0 41 chr1 9515469 9515592 -187679840 + PB1D9 SINE Alu 2 119 -1 3 657 213 200 0 0 chr1 9515801 9515836 -187679596 + polypurine Low_complexity Low_complexity 3 37 0 3 657 207 139 0 0 chr1 9516261 9516297 -187679135 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 657 813 178 7 20 chr1 9516332 9516481 -187678951 + B1_Mur3 SINE Alu 2 148 -1 3 657 866 186 45 50 chr1 9516871 9517092 -187678340 - RLTR31_Mm LTR ERVK 0 561 342 3 657 3048 48 8 0 chr1 9517105 9517481 -187677951 + L1Md_F2 LINE L1 6203 6581 -1 3 657 5439 42 4 0 chr1 9517481 9518197 -187677235 + MTA_Mm-int LTR MaLR 379 1097 -1 3 657 2253 44 82 0 chr1 9518198 9518514 -187676918 + MTA_Mm LTR MaLR 1 342 -54 3 657 1680 154 26 20 chr1 9518530 9518874 -187676558 - RLTR31_Mm LTR ERVK -210 351 6 3 657 297 188 87 0 chr1 9518888 9518957 -187676475 + B4A SINE B4 17 91 -201 3 657 258 292 42 0 chr1 9518968 9519040 -187676392 + B4A SINE B4 132 206 -86 4 657 1107 211 59 14 chr1 9519051 9519339 -187676093 + RMER5 LTR ERV1 13 313 -221 4 657 378 0 0 0 chr1 9519412 9519454 -187675978 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 657 468 298 14 95 chr1 9520090 9520301 -187675131 - B3A SINE B2 -4 194 1 4 657 238 229 192 30 chr1 9520970 9521069 -187674363 - PB1D10 SINE Alu -1 116 2 4 657 10554 72 1 1 chr1 9521097 9522456 -187672976 + L1Md_F2 LINE L1 4228 5586 -297 4 657 7768 64 7 7 chr1 9522457 9523440 -187671992 + L1Md_F2 LINE L1 5588 6570 -12 4 657 1343 87 16 16 chr1 9523768 9523955 -187671477 + B2_Mm2 SINE B2 2 188 -7 4 657 2066 156 26 32 chr1 9524180 9524557 -187670875 - ORR1C1 LTR MaLR 0 378 4 4 657 1929 151 126 18 chr1 9524561 9524703 -187670729 - ORR1C1-int LTR MaLR 0 1509 1320 4 657 2897 49 70 3 chr1 9524703 9525074 -187670358 - MTA_Mm LTR MaLR 0 396 1 4 657 1929 151 126 18 chr1 9525074 9525329 -187670103 - ORR1C1-int LTR MaLR -190 1319 1070 4 657 367 224 154 0 chr1 9525333 9525387 -187670045 + ORR1B1-int LTR MaLR 575 650 -859 4 657 468 209 57 0 chr1 9525387 9525492 -187669940 + B1_Mus2 SINE Alu 2 112 -35 5 657 2713 151 85 2 chr1 9525482 9525999 -187669433 - ORR1C1-int LTR MaLR -913 596 37 4 657 4673 213 76 45 chr1 9525999 9527216 -187668216 + RMER1A Other Other 50 1020 -10 5 657 4831 118 28 6 chr1 9527222 9527944 -187667488 + L1VL2 LINE L1 101 838 -5497 5 657 1376 163 35 28 chr1 9527947 9528237 -187667195 + ORR1B1-int LTR MaLR 237 528 -981 5 657 8026 84 35 5 chr1 9528237 9529455 -187665977 + MusHAL1 LINE L1 620 1872 -1481 5 657 6734 109 2 0 chr1 9529451 9530424 -187665008 + L1ME3B LINE L1 4862 5871 -369 5 657 571 265 0 0 chr1 9530571 9530688 -187664744 - RSINE1 SINE B4 -38 127 11 5 657 368 272 78 45 chr1 9530683 9530837 -187664595 - LTR80A LTR ERVL -80 503 345 5 657 1143 62 0 14 chr1 9530855 9531002 -187664430 + B1_Mm SINE Alu 2 146 -1 5 657 810 31 0 0 chr1 9531007 9531104 -187664328 + (GA)n Simple_repeat Simple_repeat 2 98 0 5 657 950 17 0 0 chr1 9531847 9531967 -187663465 + B1_Mus1 SINE Alu 29 148 0 6 657 484 167 156 0 chr1 9532098 9532194 -187663238 + B1_Mur1 SINE Alu 23 133 -16 6 657 234 81 0 0 chr1 9532202 9532239 -187663193 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 657 1897 72 0 0 chr1 9532412 9532661 -187662771 + MusHAL1 LINE L1 1201 1449 -1263 6 657 1485 80 35 0 chr1 9532762 9532963 -187662469 + L1_Mus2 LINE L1 6359 6566 0 6 657 363 303 22 0 chr1 9534013 9534102 -187661330 + ID_B1 SINE B4 91 181 -43 6 657 343 255 56 47 chr1 9534102 9534120 -187661312 + PB1D10 SINE Alu 10 117 0 6 657 325 250 122 20 chr1 9534121 9534219 -187661213 - B1F1 SINE Alu -41 108 1 6 657 342 250 102 0 chr1 9534132 9534220 -187661212 - ID_B1 SINE B4 -47 177 81 6 657 1045 57 0 14 chr1 9534430 9534573 -187660859 + B1_Mus1 SINE Alu 8 148 0 6 657 191 61 0 29 chr1 9534697 9534731 -187660701 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 657 225 0 0 0 chr1 9537967 9537992 -187657440 + (T)n Simple_repeat Simple_repeat 1 25 0 7 657 745 229 217 0 chr1 9540250 9540425 -187655007 - B3 SINE B2 -2 214 2 7 657 21 0 0 0 chr1 9540894 9540915 -187654517 + AT_rich Low_complexity Low_complexity 1 21 0 7 657 195 42 0 0 chr1 9541082 9541106 -187654326 + (TTG)n Simple_repeat Simple_repeat 3 26 0 7 657 703 188 16 0 chr1 9541237 9541365 -187654067 + B3 SINE B2 1 130 -86 7 657 346 302 60 30 chr1 9541406 9541539 -187653893 + RSINE1 SINE B4 29 165 0 7 657 824 154 111 28 chr1 9543132 9543312 -187652120 - B2_Mm2 SINE B2 0 195 1 7 657 234 91 0 0 chr1 9545358 9545391 -187650041 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 657 765 264 31 16 chr1 9545914 9546106 -187649326 - B3A SINE B2 -3 195 1 7 657 23 33 0 0 chr1 9546986 9547016 -187648416 + AT_rich Low_complexity Low_complexity 1 30 0 8 657 1327 189 43 16 chr1 9547852 9548110 -187647322 - Lx5 LINE L1 -188 6862 6598 8 657 534 294 7 7 chr1 9548609 9548756 -187646676 + B1F1 SINE Alu 1 147 -2 8 657 237 284 143 27 chr1 9548981 9549093 -187646339 + PB1 SINE Alu 1 125 -2 8 657 208 194 0 56 chr1 9549095 9549128 -187646304 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 8 657 1036 134 0 0 chr1 9549128 9549277 -187646155 - B1_Mur4 SINE Alu 0 150 2 8 657 208 194 0 56 chr1 9549277 9549314 -187646118 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 657 248 0 31 0 chr1 9549319 9549351 -187646081 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 8 657 703 180 172 128 chr1 9549400 9549604 -187645828 - B3 SINE B2 0 216 4 8 657 830 292 130 60 chr1 9550453 9551099 -187644333 - L1MB8 LINE L1 0 6178 5488 8 657 21 0 0 0 chr1 9551223 9551244 -187644188 + AT_rich Low_complexity Low_complexity 1 21 0 9 657 526 255 28 0 chr1 9551594 9551735 -187643697 + ID_B1 SINE B4 80 224 0 9 657 860 233 29 19 chr1 9551763 9551973 -187643459 + B3 SINE B2 1 212 -4 9 657 527 82 0 0 chr1 9552124 9552197 -187643235 + B2_Mm2 SINE B2 39 111 -84 9 657 21 0 0 0 chr1 9552237 9552258 -187643174 + AT_rich Low_complexity Low_complexity 1 21 0 9 657 286 274 19 95 chr1 9552433 9552538 -187642894 + B4A SINE B4 27 123 -169 9 657 4361 45 0 2 chr1 9552668 9553186 -187642246 + L1_Mus1 LINE L1 6051 6567 0 9 657 26 0 0 0 chr1 9553186 9553212 -187642220 + AT_rich Low_complexity Low_complexity 1 26 0 9 657 3150 61 13 3 chr1 9555490 9555882 -187639550 + MTA_Mm LTR MaLR 1 396 0 9 657 378 0 0 0 chr1 9557798 9557840 -187637592 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 657 447 243 155 14 chr1 9558773 9558915 -187636517 + RSINE1 SINE B4 4 165 0 1 657 733 281 114 0 chr1 9558974 9559220 -187636212 + MTD LTR MaLR 1 274 -145 1 657 250 217 0 115 chr1 9559282 9559294 -187636138 + B4A SINE B4 82 150 -142 1 657 363 98 0 76 chr1 9559294 9559360 -187636072 + B1_Mur4 SINE Alu 6 66 -84 1 657 1501 250 91 19 chr1 9559387 9559575 -187635857 + MTC-int LTR MaLR 1 224 -1034 1 657 1111 107 60 0 chr1 9559575 9559743 -187635689 - B2_Mm2 SINE B2 -17 178 1 1 657 1501 250 91 19 chr1 9559743 9560072 -187635360 + MTC-int LTR MaLR 225 555 -703 1 657 715 112 44 22 chr1 9560058 9560195 -187635237 + MTD LTR MaLR 224 363 -56 1 657 254 72 82 55 chr1 9560938 9560956 -187634476 + polypurine Low_complexity Low_complexity 3 19 0 1 657 1157 64 0 0 chr1 9560956 9561097 -187634335 + B1_Mm SINE Alu 2 142 -5 1 657 254 72 82 55 chr1 9561097 9561151 -187634281 + GA-rich Low_complexity Low_complexity 20 77 0 1 657 228 67 0 0 chr1 9561334 9561364 -187634068 + (ATTAG)n Simple_repeat Simple_repeat 3 32 0 1 657 293 177 35 21 chr1 9561393 9561537 -187633895 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 1 657 1193 294 93 13 chr1 9561653 9562191 -187633241 - L1MB4 LINE L1 0 6180 5600 1 657 311 270 68 29 chr1 9562201 9562304 -187633128 - PB1D10 SINE Alu -9 108 2 1 657 826 267 45 62 chr1 9562310 9562662 -187632770 - L1MB4 LINE L1 -581 5603 5258 1 657 394 242 88 40 chr1 9562946 9563071 -187632361 + ID_B1 SINE B4 84 214 -10 1 657 669 249 106 11 chr1 9563204 9563383 -187632049 - ID_B1 SINE B4 -18 206 11 1 657 401 237 16 9 chr1 9564496 9564604 -187630828 - PB1D10 SINE Alu -17 131 23 1 657 180 216 0 0 chr1 9565336 9565387 -187630045 + (TGG)n Simple_repeat Simple_repeat 1 51 0 1 657 222 304 0 0 chr1 9565399 9565468 -187629964 + (TGG)n Simple_repeat Simple_repeat 1 69 0 1 657 4138 81 5 24 chr1 9565517 9566111 -187629321 + RLTR19-int LTR ERVK 1430 2012 -4125 1 657 198 103 0 0 chr1 9566114 9566143 -187629289 + (A)n Simple_repeat Simple_repeat 1 29 0 1 657 422 256 0 0 chr1 9567026 9567108 -187628324 - ID4_ SINE ID 0 83 2 1 657 231 264 77 50 chr1 9567113 9567223 -187628209 - B1F2 SINE Alu -8 112 3 1 657 965 271 79 29 chr1 9567303 9567580 -187627852 + B4A SINE B4 2 292 0 1 658 288 0 0 0 chr1 9569647 9569679 -187625753 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 658 327 321 112 6 chr1 9569833 9569993 -187625439 - MER2 DNA MER2_type 0 345 169 1 658 270 0 0 0 chr1 9570045 9570075 -187625357 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 658 342 0 0 0 chr1 9570075 9570112 -187625320 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 658 417 273 32 24 chr1 9571183 9571307 -187624125 - ID_B1 SINE B4 -91 133 9 1 658 299 320 0 18 chr1 9571679 9571800 -187623632 + ID4 SINE ID 1 115 -37 1 658 1116 124 0 0 chr1 9571801 9572010 -187623422 + (GGGA)n Simple_repeat Simple_repeat 1 209 0 1 658 288 120 0 0 chr1 9572102 9572152 -187623280 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 1 658 1079 145 32 0 chr1 9573120 9573306 -187622126 + B2_Mm2 SINE B2 1 192 -3 1 658 197 65 0 31 chr1 9573306 9573338 -187622094 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 658 240 91 68 0 chr1 9573697 9573741 -187621691 + B1_Mm SINE Alu 100 146 -1 1 658 279 277 90 30 chr1 9574547 9574681 -187620751 + L1MC5 LINE L1 7768 7909 -52 1 658 394 295 84 32 chr1 9574999 9575153 -187620279 + MTD LTR MaLR 2 163 -256 1 658 3670 274 74 71 chr1 9575199 9576733 -187618699 + Lx9 LINE L1 6091 7629 -15 1 658 236 228 17 17 chr1 9576824 9576882 -187618550 + MTD LTR MaLR 208 265 -154 1 658 1354 134 78 34 chr1 9576882 9577226 -187618206 + Lx LINE L1 6213 6642 -12 1 658 298 144 33 48 chr1 9577229 9577305 -187618127 + MTD LTR MaLR 305 406 -13 1 658 201 238 0 0 chr1 9577644 9577686 -187617746 + CT-rich Low_complexity Low_complexity 1 42 0 1 658 956 31 0 8 chr1 9577836 9577966 -187617466 - B1_Mus2 SINE Alu -1 146 18 1 658 645 171 152 25 chr1 9577966 9578034 -187617398 - ID_B1 SINE B4 0 224 2 1 658 441 0 0 0 chr1 9578965 9579014 -187616418 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 658 855 289 25 8 chr1 9579062 9579303 -187616129 - B4A SINE B4 -46 246 2 1 658 23 0 0 0 chr1 9579341 9579364 -187616068 + AT_rich Low_complexity Low_complexity 1 23 0 1 658 232 214 0 82 chr1 9579493 9579554 -187615878 + L2c LINE L2 3331 3386 -1 1 658 633 246 101 48 chr1 9579557 9579742 -187615690 + L1MB7 LINE L1 5844 6046 -138 1 658 1426 236 40 27 chr1 9579742 9580116 -187615316 - MTEa LTR MaLR 0 379 1 1 658 633 257 99 47 chr1 9580116 9580237 -187615195 + L1MB7 LINE L1 6047 6166 -8 1 658 285 272 12 12 chr1 9580394 9580476 -187614956 + PB1 SINE Alu 42 123 -4 1 658 2182 269 134 14 chr1 9580582 9581305 -187614127 + Lx8 LINE L1 6662 7471 -2 1 658 374 204 45 84 chr1 9581308 9581463 -187613969 - MER53 DNA hAT -13 180 32 1 658 355 244 70 38 chr1 9581321 9581479 -187613953 + MER53 DNA hAT 31 193 0 1 658 270 0 0 0 chr1 9581810 9581840 -187613592 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 658 459 0 0 0 chr1 9581854 9581905 -187613527 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 658 394 253 71 32 chr1 9582273 9582428 -187613004 - MER5A DNA MER1_type -28 161 1 1 658 612 232 128 0 chr1 9582621 9582746 -187612686 + B1_Mur1 SINE Alu 3 143 -6 1 658 819 86 0 0 chr1 9582747 9582864 -187612568 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 1 658 684 295 71 32 chr1 9583464 9583744 -187611688 - B4 SINE B4 -1 291 1 1 658 399 228 112 3 chr1 9584074 9584201 -187611231 + ORR1C2 LTR MaLR 177 298 -76 1 658 14097 76 17 11 chr1 9584606 9587239 -187608193 + L1VL2 LINE L1 332 2982 -633 1 658 3650 133 5 2 chr1 9587307 9587863 -187607569 + L1_Mm LINE L1 5190 5747 -136 1 658 239 280 38 48 chr1 9587859 9587964 -187607468 + L1M2 LINE L1 5695 5798 -493 1 658 2890 63 18 5 chr1 9588021 9588404 -187607028 - RLTR10 LTR ERVK -2 388 1 1 658 656 271 91 19 chr1 9588439 9588747 -187606685 + Lx7 LINE L1 7366 7695 -1 1 658 5067 96 52 16 chr1 9588771 9589520 -187605912 + Lx LINE L1 5739 6514 -140 1 658 498 252 70 32 chr1 9589601 9589757 -187605675 - RSINE1 SINE B4 0 165 4 1 658 213 245 198 38 chr1 9589777 9589883 -187605549 - B1F SINE Alu 0 149 27 1 658 747 199 7 0 chr1 9590184 9590320 -187605112 + B3 SINE B2 1 137 -79 1 658 215 268 239 0 chr1 9590357 9590428 -187605004 + PB1D7 SINE Alu 5 92 -28 1 658 357 24 0 0 chr1 9590431 9590473 -187604959 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 658 249 83 0 0 chr1 9591455 9591491 -187603941 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 1 658 336 314 71 0 chr1 9593257 9593432 -187602000 + MIRb SINE MIR 22 209 -59 1 658 426 304 0 0 chr1 9593981 9594093 -187601339 + PB1D10 SINE Alu 1 112 -5 1 658 711 284 21 51 chr1 9594096 9594317 -187601115 + B4A SINE B4 6 220 -72 1 658 249 33 0 0 chr1 9594317 9594347 -187601085 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 658 711 284 21 51 chr1 9594347 9594359 -187601073 + B4A SINE B4 221 232 -60 1 658 218 95 24 0 chr1 9594390 9594432 -187601000 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 658 294 380 12 19 chr1 9595085 9595246 -187600186 - MIRb SINE MIR -10 258 99 1 658 993 135 0 0 chr1 9595389 9595530 -187599902 + B1_Mur4 SINE Alu 3 143 -7 1 658 486 0 0 0 chr1 9595531 9595585 -187599847 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 1 658 1343 57 6 0 chr1 9595585 9595762 -187599670 + (GGAGA)n Simple_repeat Simple_repeat 2 179 0 1 658 307 236 0 60 chr1 9595769 9595918 -187599514 + G-rich Low_complexity Low_complexity 6 145 0 1 658 260 272 24 12 chr1 9596026 9596108 -187599324 + L1MB3 LINE L1 5908 5990 -193 1 658 942 249 9 27 chr1 9596191 9596410 -187599022 - ID_B1 SINE B4 0 224 10 1 658 252 0 0 0 chr1 9596442 9596470 -187598962 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 658 1044 242 159 27 chr1 9596496 9596899 -187598533 - L1MB3 LINE L1 -33 6150 5695 1 658 7806 91 18 11 chr1 9597629 9598729 -187596703 - Lx LINE L1 -7 6647 5539 1 658 29 47 0 0 chr1 9598904 9598947 -187596485 + AT_rich Low_complexity Low_complexity 1 43 0 1 658 226 0 0 56 chr1 9598993 9599029 -187596403 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 658 4290 122 93 101 chr1 9600049 9600962 -187594470 - RMER17A2 LTR ERVK 0 906 1 1 658 413 316 9 0 chr1 9601110 9601224 -187594208 + ID_B1 SINE B4 88 202 -22 1 658 423 0 0 0 chr1 9601230 9601277 -187594155 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 658 398 316 91 17 chr1 9602099 9602340 -187593092 - MER2 DNA MER2_type 0 345 87 1 658 713 247 233 31 chr1 9602349 9602747 -187592685 - Lx7 LINE L1 -25 7448 6970 1 658 987 254 240 9 chr1 9602775 9603204 -187592228 - Lx8 LINE L1 -29 7444 6917 1 658 549 110 0 0 chr1 9603890 9603972 -187591460 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 658 615 204 45 8 chr1 9604075 9604208 -187591224 - B1_Mur3 SINE Alu -11 138 1 1 658 455 206 56 47 chr1 9604497 9604604 -187590828 + PB1D10 SINE Alu 10 117 0 1 658 614 263 101 62 chr1 9604608 9604884 -187590548 + B4 SINE B4 1 287 -5 1 658 1347 72 0 0 chr1 9604909 9605089 -187590343 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 1 658 576 0 0 0 chr1 9605089 9605153 -187590279 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 1 658 261 0 0 0 chr1 9605515 9605544 -187589888 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 658 226 206 43 29 chr1 9605610 9605680 -187589752 - MER5A1 DNA MER1_type -3 163 93 1 658 440 264 38 0 chr1 9606157 9606263 -187589169 - PB1D10 SINE Alu -7 110 1 2 658 1277 234 49 106 chr1 9607466 9607854 -187587578 - ORR1D2 LTR MaLR -4 366 1 2 658 707 291 4 22 chr1 9607995 9608227 -187587205 - MER2 DNA MER2_type -26 319 92 2 658 260 269 136 48 chr1 9608248 9608373 -187587059 - ID_B1 SINE B4 -1 223 88 2 658 279 0 0 0 chr1 9608394 9608425 -187587007 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 658 516 72 0 0 chr1 9608426 9608495 -187586937 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 658 236 329 0 0 chr1 9608518 9608597 -187586835 - ID4_ SINE ID -2 81 3 2 658 261 261 85 139 chr1 9608771 9608936 -187586496 - MER57C2 LTR ERV1 -1 433 278 2 658 243 280 26 26 chr1 9609118 9609195 -187586237 - RSINE1 SINE B4 -87 78 2 2 658 484 281 49 12 chr1 9609542 9609704 -187585728 - L1MC1 LINE L1 -2 6331 6164 2 658 469 329 87 51 chr1 9610373 9610626 -187584806 - MLT1A LTR MaLR -112 262 1 2 658 1564 162 130 0 chr1 9613237 9613552 -187581880 - MTC LTR MaLR -65 356 1 2 658 278 276 40 0 chr1 9613952 9614028 -187581404 - ID4_ SINE ID -3 80 2 2 658 251 303 15 0 chr1 9614434 9614500 -187580932 - ID4_ SINE ID -11 72 6 2 658 214 293 103 8 chr1 9615618 9615735 -187579697 - MIRc SINE MIR -20 248 121 2 658 303 270 0 43 chr1 9615924 9616017 -187579415 + PB1D10 SINE Alu 28 116 -1 2 658 279 227 53 0 chr1 9616063 9616138 -187579294 - MADE2 DNA Mariner -1 79 1 2 658 257 335 81 29 chr1 9616179 9616351 -187579081 - MIRb SINE MIR -2 266 86 2 658 23 33 0 0 chr1 9617103 9617133 -187578299 + AT_rich Low_complexity Low_complexity 1 30 0 2 658 252 0 0 0 chr1 9621041 9621069 -187574363 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 658 309 26 0 0 chr1 9621069 9621106 -187574326 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 658 201 288 153 0 chr1 9621504 9621615 -187573817 - MIRb SINE MIR -26 242 115 2 658 449 277 215 0 chr1 9622348 9622525 -187572907 + B3 SINE B2 2 216 0 2 658 309 344 62 53 chr1 9622891 9623134 -187572298 - BLACKJACK DNA AcHobo -2368 576 332 2 658 330 26 0 0 chr1 9623751 9623790 -187571642 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 658 633 246 0 0 chr1 9623959 9624039 -187571393 + ID SINE ID 2 81 -143 2 658 268 160 60 0 chr1 9624039 9624089 -187571343 + B1F2 SINE Alu 1 53 -96 2 658 346 51 88 25 chr1 9624112 9624192 -187571240 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 2 658 267 133 0 0 chr1 9624947 9624992 -187570440 + (TAA)n Simple_repeat Simple_repeat 1 45 0 2 658 1254 32 7 29 chr1 9625472 9625931 -187569501 + (TG)n Simple_repeat Simple_repeat 1 448 0 2 658 207 214 3 0 chr1 9626061 9626111 -187569321 - L2b LINE L2 0 3387 3333 2 658 240 267 47 19 chr1 9628066 9628173 -187567259 - L1MC2 LINE L1 -246 6098 5989 2 658 237 122 81 0 chr1 9628174 9628248 -187567184 + CT-rich Low_complexity Low_complexity 4 83 0 2 658 1168 197 30 0 chr1 9628433 9628636 -187566796 + B3 SINE B2 1 209 -7 2 658 2892 175 13 45 chr1 9629619 9630223 -187565209 + Lx4B LINE L1 6474 7058 0 2 658 232 279 0 0 chr1 9630726 9630787 -187564645 - MIRc SINE MIR -133 135 75 2 658 1201 250 51 6 chr1 9631333 9631647 -187563785 + MTE2a LTR MaLR 52 379 0 2 658 1141 151 101 10 chr1 9633632 9633839 -187561593 - URR1A DNA MER1_type 0 226 1 2 658 297 0 0 0 chr1 9633852 9633885 -187561547 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 658 376 278 0 11 chr1 9633946 9634037 -187561395 - B3A SINE B2 -108 90 1 2 658 311 303 0 0 chr1 9634059 9634135 -187561297 + ID4 SINE ID 6 81 -2 2 658 472 363 32 18 chr1 9634227 9634505 -187560927 + B4A SINE B4 5 286 -6 2 658 1288 233 76 31 chr1 9634975 9635329 -187560103 - ORR1D2 LTR MaLR 0 370 1 2 658 576 111 0 0 chr1 9636723 9636831 -187558601 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 2 658 271 283 23 84 chr1 9636852 9636983 -187558449 - MER33 DNA MER1_type -195 129 7 2 658 343 274 123 0 chr1 9637418 9637524 -187557908 - PB1D7 SINE Alu -1 119 1 2 658 219 69 0 0 chr1 9637939 9637968 -187557464 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 658 2597 160 16 0 chr1 9637989 9638116 -187557316 + Lx LINE L1 6214 6340 -314 2 658 396 0 0 0 chr1 9638116 9638160 -187557272 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 658 2597 160 16 0 chr1 9638160 9638464 -187556968 + Lx LINE L1 6341 6650 -4 2 658 1176 62 0 14 chr1 9638465 9638613 -187556819 + B1_Mus1 SINE Alu 1 146 -2 2 658 180 0 0 0 chr1 9639313 9639333 -187556099 + (CAG)n Simple_repeat Simple_repeat 2 21 0 2 658 327 247 165 0 chr1 9639819 9639904 -187555528 + B1F SINE Alu 6 104 -45 2 658 396 226 12 12 chr1 9642034 9642119 -187553313 - PB1D7 SINE Alu -35 85 1 2 658 192 245 0 0 chr1 9642191 9642244 -187553188 + GA-rich Low_complexity Low_complexity 2 54 0 2 658 318 184 120 20 chr1 9642344 9642444 -187552988 - L1MB8 LINE L1 -2 6176 6067 2 658 297 345 21 97 chr1 9643399 9643585 -187551847 + B4A SINE B4 3 174 -118 2 658 210 240 20 0 chr1 9643702 9643752 -187551680 + CT-rich Low_complexity Low_complexity 3 53 0 2 658 23 0 0 0 chr1 9643771 9643794 -187551638 + AT_rich Low_complexity Low_complexity 1 23 0 2 658 1297 249 92 33 chr1 9643827 9644217 -187551215 + Lx8 LINE L1 6507 6919 -554 2 658 213 268 0 0 chr1 9644443 9644484 -187550948 - B4A SINE B4 -169 123 83 2 658 1107 76 7 0 chr1 9644518 9644663 -187550769 - B1_Mus2 SINE Alu 0 147 2 2 658 380 250 21 11 chr1 9644663 9644756 -187550676 - B4A SINE B4 -196 96 3 2 658 527 330 76 21 chr1 9644766 9645054 -187550378 + Lx8 LINE L1 6926 7229 -244 2 658 347 333 16 8 chr1 9645054 9645175 -187550257 + Lx8 LINE L1 7167 7288 -185 2 658 807 205 68 57 chr1 9645382 9645646 -187549786 - Lx7 LINE L1 0 7696 7430 2 658 919 243 22 4 chr1 9645649 9645876 -187549556 - Lx7 LINE L1 -1405 6291 6061 2 658 210 306 24 0 chr1 9646920 9647005 -187548427 - L2a LINE L2 0 3426 3340 2 658 1133 80 0 6 chr1 9647418 9647581 -187547851 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 2 658 1079 43 7 0 chr1 9647780 9647919 -187547513 - L1_Mus1 LINE L1 -1 6566 6427 2 658 402 258 76 38 chr1 9648263 9648448 -187546984 - Arthur1C DNA Tip100 -27 336 145 2 658 189 0 0 0 chr1 9649006 9649027 -187546405 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 2 658 708 296 10 15 chr1 9649805 9650007 -187545425 + ID_B1 SINE B4 20 220 -4 2 658 23 33 0 0 chr1 9650095 9650125 -187545307 + AT_rich Low_complexity Low_complexity 1 30 0 2 658 643 315 57 40 chr1 9650337 9650837 -187544595 + L1_Mur3 LINE L1 5149 5659 -641 2 658 289 312 100 60 chr1 9651248 9651497 -187543935 - Lx8 LINE L1 -5 7468 7210 2 658 317 339 34 0 chr1 9651631 9651749 -187543683 + LTR16A LTR ERVL 205 326 -125 2 658 228 67 0 0 chr1 9651938 9651968 -187543464 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 658 879 86 101 0 chr1 9651968 9652107 -187543325 - B2_Mm2 SINE B2 -38 157 5 2 658 299 202 143 0 chr1 9652117 9652201 -187543231 - PB1D9 SINE Alu -8 112 17 2 658 264 290 60 75 chr1 9652779 9652913 -187542519 + MER33 DNA MER1_type 2 133 -191 2 658 1063 261 152 34 chr1 9653255 9653849 -187541583 - L1_Rod LINE L1 -15 5832 5169 2 658 255 237 122 9 chr1 9653853 9653968 -187541464 + MER33 DNA MER1_type 98 225 -99 2 658 359 208 188 97 chr1 9654646 9654822 -187540610 - L1ME3A LINE L1 -64 6109 5918 2 658 291 323 54 23 chr1 9654908 9655038 -187540394 + MIRb SINE MIR 98 231 -37 2 658 256 338 166 30 chr1 9656430 9656665 -187538767 + MamRep605 Unknown Unknown 568 834 -42 2 658 3581 158 11 2 chr1 9656674 9657291 -187538141 + Lx2 LINE L1 6372 6994 -3 2 658 216 0 0 0 chr1 9657783 9657807 -187537625 + (A)n Simple_repeat Simple_repeat 1 24 0 2 658 30 27 0 0 chr1 9658977 9659014 -187536418 + AT_rich Low_complexity Low_complexity 1 37 0 2 658 430 284 86 0 chr1 9660165 9660281 -187535151 - RSINE1 SINE B4 -37 128 3 2 658 391 238 25 0 chr1 9660565 9660645 -187534787 + ID4 SINE ID 1 82 -1 2 658 494 0 33 0 chr1 9660645 9660706 -187534726 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2 658 216 0 0 0 chr1 9661129 9661153 -187534279 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 658 321 238 82 45 chr1 9661283 9661393 -187534039 + PB1D10 SINE Alu 2 115 -2 2 658 517 92 0 19 chr1 9663435 9663538 -187531894 - B1_Mus2 SINE Alu 0 150 54 2 658 261 244 84 12 chr1 9664103 9664186 -187531246 + L2a LINE L2 3311 3399 -27 2 658 967 250 97 47 chr1 9665024 9665385 -187530047 + MTE2a LTR MaLR 1 379 0 2 658 283 236 118 85 chr1 9665739 9665892 -187529540 + MIR3 SINE MIR 49 206 -2 2 658 1006 55 16 0 chr1 9666498 9666625 -187528807 + B1_Mus1 SINE Alu 1 129 -19 2 658 23 0 0 0 chr1 9666812 9666835 -187528597 + AT_rich Low_complexity Low_complexity 1 23 0 2 658 688 207 37 0 chr1 9667124 9667259 -187528173 + B1_Mur1 SINE Alu 3 142 -7 2 658 4157 74 4 0 chr1 9667267 9667822 -187527610 + L1_Mus2 LINE L1 6010 6566 0 2 658 39 0 0 0 chr1 9667922 9667961 -187527471 + AT_rich Low_complexity Low_complexity 1 39 0 2 658 323 268 127 24 chr1 9669480 9669606 -187525826 + MER3 DNA MER1_type 3 141 -68 2 658 783 208 46 10 chr1 9669704 9669898 -187525534 + B3 SINE B2 2 202 -14 2 658 201 74 0 0 chr1 9669899 9669926 -187525506 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 658 294 247 10 20 chr1 9670342 9670441 -187524991 - Lx8 LINE L1 -2 7471 7374 3 658 870 192 154 0 chr1 9670471 9670653 -187524779 + B3 SINE B2 2 211 -5 3 658 224 277 74 74 chr1 9670667 9670788 -187524644 - BC1_Mm scRNA scRNA -30 122 2 3 658 252 372 26 0 chr1 9671147 9671225 -187524207 - ID2 SINE ID -1 82 3 3 658 369 286 17 26 chr1 9672178 9672293 -187523139 + PB1D10 SINE Alu 4 117 0 3 658 684 259 46 41 chr1 9672327 9672524 -187522908 + ID_B1 SINE B4 10 207 -17 3 658 295 190 17 17 chr1 9672917 9672976 -187522456 - B1F1 SINE Alu -82 67 9 3 658 249 210 0 88 chr1 9672923 9672991 -187522441 - ID_B1 SINE B4 -83 141 80 3 658 465 236 64 0 chr1 9673020 9673130 -187522302 - B1F SINE Alu -21 128 12 3 658 369 250 135 0 chr1 9673346 9673450 -187521982 + PB1D9 SINE Alu 3 120 0 3 658 599 236 35 7 chr1 9673625 9673770 -187521662 - B1F SINE Alu 0 149 1 3 658 1133 61 7 0 chr1 9674387 9674534 -187520898 - B1_Mus1 SINE Alu 0 148 1 3 658 22 0 0 0 chr1 9674553 9674575 -187520857 + AT_rich Low_complexity Low_complexity 1 22 0 3 658 22 35 0 0 chr1 9675683 9675712 -187519720 + AT_rich Low_complexity Low_complexity 1 29 0 3 658 1206 40 0 0 chr1 9675984 9676132 -187519300 - B1_Mus1 SINE Alu 0 148 1 3 658 339 174 55 31 chr1 9676349 9676461 -187518971 + PB1 SINE Alu 39 149 0 3 658 249 109 0 0 chr1 9676535 9676581 -187518851 + (A)n Simple_repeat Simple_repeat 1 46 0 3 658 569 40 0 0 chr1 9678071 9678146 -187517286 + B1_Mur4 SINE Alu 76 150 0 3 658 363 291 19 46 chr1 9678671 9678779 -187516653 - PB1D10 SINE Alu 0 117 13 3 658 39 38 0 0 chr1 9679273 9679326 -187516106 + AT_rich Low_complexity Low_complexity 1 53 0 3 658 705 278 71 41 chr1 9679536 9679802 -187515630 + B4 SINE B4 5 278 -14 3 658 195 42 0 0 chr1 9679838 9679862 -187515570 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 658 676 252 52 39 chr1 9679945 9680098 -187515334 + RSINE1 SINE B4 9 163 -2 3 658 1158 68 0 0 chr1 9680781 9680927 -187514505 + B1_Mus2 SINE Alu 2 147 0 3 658 1370 52 40 0 chr1 9680960 9681133 -187514299 + B2_Mm2 SINE B2 1 180 -15 3 658 1448 65 16 0 chr1 9681177 9681361 -187514071 - B2_Mm2 SINE B2 -7 188 2 3 658 554 277 0 57 chr1 9681820 9681977 -187513455 + B1_Mur1 SINE Alu 1 148 -1 3 658 281 289 26 0 chr1 9682103 9682179 -187513253 + ID4_ SINE ID 4 81 -2 3 658 1664 21 0 0 chr1 9682938 9683127 -187512305 - B2_Mm1a SINE B2 -3 190 2 3 658 323 190 0 0 chr1 9683738 9683796 -187511636 + B4A SINE B4 173 230 -62 3 658 218 105 0 26 chr1 9683845 9683884 -187511548 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 3 658 1359 69 21 5 chr1 9684717 9684906 -187510526 - B2_Mm2 SINE B2 -3 192 1 3 658 331 311 80 43 chr1 9685105 9685243 -187510189 - B1F1 SINE Alu 0 149 7 3 658 1049 116 79 0 chr1 9685658 9685822 -187509610 + B2_Mm1t SINE B2 3 179 -14 3 658 338 105 313 17 chr1 9685884 9685999 -187509433 + B2_Mm2 SINE B2 47 195 0 3 658 1228 89 14 116 chr1 9686003 9686041 -187509391 + B2_Mm2 SINE B2 2 39 -156 3 658 3445 125 41 27 chr1 9686041 9686627 -187508805 + Lx LINE L1 6052 6645 -9 3 658 1228 89 14 116 chr1 9686627 9686803 -187508629 + B2_Mm2 SINE B2 40 194 -1 3 658 514 277 0 57 chr1 9686809 9686966 -187508466 + B1F SINE Alu 2 149 0 3 658 21 57 0 0 chr1 9687215 9687250 -187508182 + AT_rich Low_complexity Low_complexity 1 35 0 3 658 414 246 128 40 chr1 9687761 9687909 -187507523 + RSINE1 SINE B4 3 163 -2 3 658 464 301 14 34 chr1 9688730 9688878 -187506554 + MER20 DNA MER1_type 1 145 -74 3 658 193 29 29 29 chr1 9690295 9690330 -187505102 + (CCG)n Simple_repeat Simple_repeat 2 36 0 3 658 227 208 27 27 chr1 9690510 9690675 -187504757 + G-rich Low_complexity Low_complexity 1 165 0 3 658 374 252 121 19 chr1 9691647 9691764 -187503668 - B1F SINE Alu -7 142 11 3 658 604 281 170 17 chr1 9692149 9692555 -187502877 + RLTR12B LTR ERVK 47 514 -14 3 658 253 247 162 20 chr1 9692773 9692872 -187502560 + PB1D7 SINE Alu 1 113 -7 3 658 300 338 12 0 chr1 9692969 9693049 -187502383 + PB1D10 SINE Alu 24 104 -13 3 658 670 174 144 0 chr1 9693220 9693352 -187502080 + B3 SINE B2 1 151 -65 3 658 336 268 68 141 chr1 9693360 9693397 -187502035 + ID_B1 SINE B4 47 223 -1 3 658 555 169 78 117 chr1 9693397 9693551 -187501881 + B1F SINE Alu 1 148 -1 3 658 215 276 0 0 chr1 9693761 9693819 -187501613 - B1F SINE Alu -90 59 2 3 658 23 33 0 0 chr1 9693821 9693851 -187501581 + AT_rich Low_complexity Low_complexity 1 30 0 3 658 210 37 0 0 chr1 9693925 9693952 -187501480 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 658 1235 7 0 0 chr1 9694161 9694301 -187501131 - B1_Mus2 SINE Alu -7 140 1 3 658 379 228 148 27 chr1 9694846 9694995 -187500437 - MIRb SINE MIR -70 198 32 3 658 24 53 0 0 chr1 9695257 9695295 -187500137 + AT_rich Low_complexity Low_complexity 1 38 0 3 658 1160 55 7 0 chr1 9695923 9696068 -187499364 - B1_Mus1 SINE Alu 0 148 3 3 658 1037 278 39 23 chr1 9696126 9696576 -187498856 + MLT1D LTR MaLR 4 501 -4 3 658 644 276 72 53 chr1 9697062 9697269 -187498163 + B4A SINE B4 5 215 -77 3 658 548 152 132 9 chr1 9697621 9697727 -187497705 + PB1D9 SINE Alu 2 120 0 3 658 1206 97 23 0 chr1 9697774 9697949 -187497483 + B2_Mm1t SINE B2 1 179 -14 3 658 1995 74 33 75 chr1 9698182 9698517 -187496915 - ORR1A4 LTR MaLR -8 321 1 3 658 219 339 73 0 chr1 9698642 9698751 -187496681 + L2 LINE L2 2268 2384 -1035 3 658 395 379 12 6 chr1 9698920 9699082 -187496350 - RSINE1 SINE B4 0 165 3 3 659 235 241 66 49 chr1 9699348 9699409 -187496023 - tRNA-Ala-GCA tRNA tRNA -11 64 3 3 659 675 311 71 106 chr1 9699598 9700004 -187495428 - LTR40c LTR ERVL -5 460 69 3 659 880 182 0 13 chr1 9700169 9700319 -187495113 + B1_Mus1 SINE Alu 1 148 0 3 659 1103 73 0 0 chr1 9700442 9700579 -187494853 + B1_Mus2 SINE Alu 1 137 -10 3 659 257 51 0 25 chr1 9700579 9700619 -187494813 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 659 1190 61 0 0 chr1 9700790 9700937 -187494495 - B1_Mus2 SINE Alu 0 147 1 3 659 1549 42 5 10 chr1 9700949 9701143 -187494289 - B2_Mm1a SINE B2 0 193 1 3 659 1573 125 81 7 chr1 9701704 9701977 -187493455 - ORR1A4 LTR MaLR -8 321 29 3 659 840 191 53 0 chr1 9701987 9702139 -187493293 + B3 SINE B2 53 212 -4 3 659 556 111 44 0 chr1 9702229 9702319 -187493113 + B2_Mm2 SINE B2 4 97 -98 3 659 320 150 11 30 chr1 9702330 9702396 -187493036 + B2_Mm2 SINE B2 47 114 -102 3 659 189 0 0 0 chr1 9702414 9702435 -187492997 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 659 465 50 0 0 chr1 9702583 9702643 -187492789 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 3 659 764 291 32 28 chr1 9702806 9703089 -187492343 - B4A SINE B4 -8 284 1 3 659 387 307 9 9 chr1 9703105 9703220 -187492212 - PB1D10 SINE Alu -2 115 1 3 659 518 247 223 29 chr1 9703551 9703726 -187491706 + ID_B1 SINE B4 8 216 -8 3 659 333 0 0 0 chr1 9703963 9704000 -187491432 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 659 410 331 41 0 chr1 9704004 9704149 -187491283 - RSINE1 SINE B4 -13 152 2 3 659 243 286 105 23 chr1 9704321 9704407 -187491025 - B3A SINE B2 -98 100 6 3 659 722 91 136 0 chr1 9704698 9704841 -187490591 - B2_Mm2 SINE B2 -1 192 27 3 659 5150 53 0 6 chr1 9704860 9705509 -187489923 + L1Md_F2 LINE L1 4942 5586 -297 3 659 8110 46 1 4 chr1 9705509 9706508 -187488924 + L1Md_F2 LINE L1 5587 6582 0 3 659 910 90 15 0 chr1 9706547 9706680 -187488752 - B2_Mm1t SINE B2 -58 135 1 3 659 1227 27 0 7 chr1 9706713 9706861 -187488571 - B1_Mus2 SINE Alu 0 147 1 3 659 393 222 67 40 chr1 9706918 9706938 -187488494 - CYRA11_Mm Unknown Y-chromosome -295 322 172 3 659 835 102 16 0 chr1 9706938 9707065 -187488367 + URR1B DNA MER1_type 97 225 0 3 659 791 275 48 0 chr1 9707075 9707264 -187488168 - ID_B1 SINE B4 -21 203 6 3 659 351 113 0 0 chr1 9707495 9707548 -187487884 + (T)n Simple_repeat Simple_repeat 1 53 0 3 659 500 268 100 19 chr1 9707861 9708021 -187487411 - RMER15 LTR ERVL 0 575 403 3 659 200 252 182 27 chr1 9708355 9708465 -187486967 + L2a LINE L2 3298 3424 -2 3 659 224 244 115 0 chr1 9709327 9709405 -187486027 - MIR SINE MIR -32 230 144 3 659 190 51 50 25 chr1 9709822 9709862 -187485570 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 659 1045 92 0 0 chr1 9709870 9710011 -187485421 - B1_Mus1 SINE Alu -6 142 2 3 659 777 179 27 27 chr1 9712552 9712701 -187482731 + B1_Mur1 SINE Alu 1 149 0 3 659 750 194 14 7 chr1 9715566 9715706 -187479726 + B1_Mus1 SINE Alu 1 141 -7 3 659 22 56 0 0 chr1 9715708 9715744 -187479688 + AT_rich Low_complexity Low_complexity 1 36 0 3 659 1079 98 73 6 chr1 9715748 9715912 -187479520 + B2_Mm2 SINE B2 2 176 -19 4 659 234 122 20 0 chr1 9715933 9715982 -187479450 + B2_Mm1t SINE B2 135 184 -9 4 659 189 0 0 0 chr1 9716014 9716035 -187479397 + (A)n Simple_repeat Simple_repeat 1 21 0 4 659 32 67 0 0 chr1 9716175 9716235 -187479197 + AT_rich Low_complexity Low_complexity 1 60 0 4 659 467 156 13 0 chr1 9716447 9716524 -187478908 + ID_B1 SINE B4 80 157 -67 4 659 22 0 0 0 chr1 9716655 9716677 -187478755 + AT_rich Low_complexity Low_complexity 1 22 0 4 659 524 283 35 59 chr1 9716677 9716846 -187478586 + RSINE1 SINE B4 1 165 0 4 659 886 101 72 7 chr1 9716962 9717101 -187478331 + B1_Mus1 SINE Alu 1 148 0 4 659 182 0 107 0 chr1 9717101 9717129 -187478303 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 4 659 421 217 122 66 chr1 9717367 9717602 -187477830 + L1M5 LINE L1 3177 3423 -2723 4 659 304 262 196 0 chr1 9717654 9717761 -187477671 + B3A SINE B2 1 128 -70 4 659 645 267 172 38 chr1 9717761 9718387 -187477045 + L1M5 LINE L1 4119 4828 -1318 4 659 189 107 0 0 chr1 9718387 9718415 -187477017 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 659 278 247 21 138 chr1 9718427 9718448 -187476984 - ID SINE ID -140 84 2 4 659 301 275 0 55 chr1 9718448 9718521 -187476911 - ID4 SINE ID -13 70 2 4 659 330 247 27 22 chr1 9718523 9718613 -187476819 - PB1D10 SINE Alu -2 125 27 4 659 769 170 0 64 chr1 9718650 9718807 -187476625 - B1_Mus2 SINE Alu 0 147 1 4 659 260 328 52 7 chr1 9718888 9719023 -187476409 + L1ME1 LINE L1 4850 4990 -1156 4 659 189 171 0 0 chr1 9719040 9719075 -187476357 + T-rich Low_complexity Low_complexity 1 35 0 4 659 827 193 0 20 chr1 9719075 9719228 -187476204 - B1_Mur4 SINE Alu 0 150 1 4 659 387 234 259 25 chr1 9719273 9719593 -187475839 + L1ME1 LINE L1 5009 5403 -743 4 659 1042 98 39 7 chr1 9719660 9719842 -187475590 - B2_Mm1t SINE B2 -1 194 6 4 659 476 129 35 12 chr1 9719820 9719906 -187475526 + B2_Mm2 SINE B2 100 187 -8 4 659 386 244 0 68 chr1 9719896 9719984 -187475448 + B4 SINE B4 211 292 0 4 659 201 302 0 0 chr1 9719985 9720038 -187475394 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 659 625 272 292 9 chr1 9720166 9720392 -187475040 - B4A SINE B4 0 292 3 4 659 358 183 37 0 chr1 9720393 9720475 -187474957 + L1ME1 LINE L1 5581 5665 -514 4 659 719 164 97 0 chr1 9720485 9720619 -187474813 + B1_Mur3 SINE Alu 1 147 -2 4 659 186 43 0 0 chr1 9720650 9720673 -187474759 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 4 659 310 263 9 57 chr1 9720687 9720792 -187474640 + L1MD LINE L1 5653 5752 -490 4 659 381 263 105 100 chr1 9720801 9720814 -187474618 - B2_Mm2 SINE B2 -4 191 179 4 659 180 125 0 0 chr1 9720814 9720846 -187474586 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 659 770 242 19 36 chr1 9720846 9721022 -187474410 - B3A SINE B2 -17 178 1 4 659 1360 94 11 0 chr1 9721064 9721255 -187474177 + B2_Mm1t SINE B2 1 193 0 4 659 266 264 210 39 chr1 9721671 9721876 -187473556 + L1ME1 LINE L1 5868 6107 -72 4 659 328 247 31 31 chr1 9722244 9722340 -187473092 + RSINE1 SINE B4 11 106 -59 4 659 414 39 0 0 chr1 9722372 9722424 -187473008 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 659 1071 123 7 0 chr1 9722463 9722609 -187472823 + B1_Mus1 SINE Alu 1 147 -1 4 659 227 196 22 0 chr1 9723476 9723522 -187471910 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 659 234 382 56 0 chr1 9723523 9723612 -187471820 + ZP3AR Satellite Satellite 45 138 -74 4 659 414 195 0 21 chr1 9723579 9723674 -187471758 + ID4 SINE ID 11 99 -53 4 659 798 212 63 58 chr1 9723730 9723920 -187471512 + B3A SINE B2 2 192 -6 4 659 2595 136 88 29 chr1 9723939 9724425 -187471007 + RMER1C Other Other 828 1342 0 4 659 303 125 0 40 chr1 9724469 9724519 -187470913 + L1_Mm LINE L1 4573 4620 -1263 4 659 8897 21 1 1 chr1 9724552 9725568 -187469864 + L1Md_A LINE L1 4571 5586 -297 4 659 9013 33 0 0 chr1 9725568 9726564 -187468868 + L1Md_A LINE L1 5587 6582 0 4 659 371 291 48 10 chr1 9726579 9726683 -187468749 - PB1 SINE Alu -19 108 1 4 659 223 224 20 0 chr1 9726746 9726795 -187468637 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 659 606 253 11 74 chr1 9726795 9726970 -187468462 - RSINE1 SINE B4 0 165 2 4 659 291 296 93 88 chr1 9727249 9727475 -187467957 - Charlie8 DNA MER1_type -2170 258 32 4 659 1430 104 16 0 chr1 9727948 9728140 -187467292 - B2_Mm2 SINE B2 0 195 1 4 659 246 277 60 92 chr1 9728882 9729046 -187466386 - MIR3 SINE MIR -24 184 30 4 659 225 154 0 0 chr1 9729481 9729520 -187465912 + A-rich Low_complexity Low_complexity 1 39 0 4 659 442 274 0 71 chr1 9729610 9729736 -187465696 - PB1D10 SINE Alu 0 117 1 4 659 579 240 23 31 chr1 9729872 9730001 -187465431 + RSINE1 SINE B4 14 141 -24 4 659 183 80 0 0 chr1 9730008 9730033 -187465399 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 659 192 320 74 46 chr1 9730180 9730288 -187465144 + L2c LINE L2 3259 3369 -18 4 659 744 238 65 24 chr1 9730365 9730533 -187464899 + B3 SINE B2 14 188 -28 4 659 1368 59 17 23 chr1 9730656 9730830 -187464602 - B2_Mm2 SINE B2 -19 176 4 4 659 1757 32 0 0 chr1 9730853 9731043 -187464389 + B2_Mm1t SINE B2 2 191 -2 4 659 1261 91 16 38 chr1 9731347 9731530 -187463902 + B2_Mm2 SINE B2 2 180 -15 4 659 279 309 90 146 chr1 9731574 9731752 -187463680 + B4 SINE B4 50 217 -75 4 659 653 187 80 22 chr1 9731626 9731763 -187463669 + B1_Mur3 SINE Alu 5 149 0 4 659 279 227 0 96 chr1 9732165 9732238 -187463194 + tRNA-Ala-GCY_ tRNA tRNA 10 75 0 4 659 252 0 0 0 chr1 9733051 9733079 -187462353 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 659 279 0 0 0 chr1 9733099 9733130 -187462302 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 659 332 60 0 39 chr1 9733783 9733835 -187461597 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 4 659 752 69 267 0 chr1 9733840 9733956 -187461476 - B1_Mm SINE Alu 0 147 1 4 659 22 35 0 0 chr1 9734470 9734499 -187460933 + AT_rich Low_complexity Low_complexity 1 29 0 4 659 33 43 0 0 chr1 9735255 9735302 -187460130 + AT_rich Low_complexity Low_complexity 1 47 0 4 659 237 83 0 0 chr1 9738193 9738229 -187457203 + (CGG)n Simple_repeat Simple_repeat 2 37 0 4 659 219 188 0 0 chr1 9739183 9739231 -187456201 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 659 561 227 12 0 chr1 9739231 9739347 -187456085 - B1_Mur2 SINE Alu -1 119 1 4 659 329 328 63 32 chr1 9739475 9739601 -187455831 - B1_Mus2 SINE Alu -15 132 3 4 659 888 259 26 11 chr1 9739601 9739681 -187455751 - ID SINE ID -139 85 3 4 659 543 122 61 0 chr1 9739713 9739811 -187455621 - Lx9 LINE L1 -4 7640 7537 4 659 312 27 0 0 chr1 9739831 9739868 -187455564 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 659 22 56 0 0 chr1 9739984 9740020 -187455412 + AT_rich Low_complexity Low_complexity 1 36 0 4 659 1202 209 9 0 chr1 9740049 9740274 -187455158 - Lx9 LINE L1 -162 7482 7256 4 659 265 313 11 41 chr1 9740430 9740546 -187454886 - MIR SINE MIR -99 169 60 4 659 320 320 0 0 chr1 9740589 9740664 -187454768 - ID4_ SINE ID -4 79 5 4 659 450 264 56 8 chr1 9740679 9740805 -187454627 - B1F SINE Alu -5 144 13 4 659 420 167 198 27 chr1 9740843 9740954 -187454478 - B1F SINE Alu 0 149 20 4 659 706 252 7 0 chr1 9740990 9741125 -187454307 - B1_Mur1 SINE Alu -13 136 1 4 659 1325 41 0 0 chr1 9741495 9741642 -187453790 + B1_Mus2 SINE Alu 1 147 0 4 659 1266 246 105 23 chr1 9742083 9742333 -187453099 + ORR1D2 LTR MaLR 1 275 -95 4 659 315 0 0 0 chr1 9742333 9742368 -187453064 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 659 1266 246 105 23 chr1 9742368 9742459 -187452973 + ORR1D2 LTR MaLR 276 370 0 4 659 837 56 0 0 chr1 9742716 9742823 -187452609 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 659 1011 39 0 23 chr1 9743097 9743227 -187452205 + B1_Mm SINE Alu 21 147 0 4 659 213 343 78 0 chr1 9743626 9743728 -187451704 + MIRb SINE MIR 123 232 -36 4 659 834 143 8 0 chr1 9743960 9744086 -187451346 - B1_Mus2 SINE Alu -7 140 14 4 659 399 204 17 104 chr1 9743988 9744103 -187451329 - MT2B LTR ERVL -337 264 160 4 659 324 299 86 0 chr1 9744088 9744205 -187451227 - B1_Mus1 SINE Alu 0 148 22 4 659 427 275 1 0 chr1 9744360 9744447 -187450985 + PB1D10 SINE Alu 18 107 -42 4 659 462 18 0 0 chr1 9744447 9744502 -187450930 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 659 278 167 18 18 chr1 9744649 9744704 -187450728 - B2_Mm2 SINE B2 -94 101 47 4 659 1388 90 11 0 chr1 9744736 9744913 -187450519 - B2_Mm1t SINE B2 -14 179 1 4 659 199 349 92 11 chr1 9745236 9745323 -187450109 + MIRb SINE MIR 35 128 -140 4 659 270 0 0 0 chr1 9745417 9745447 -187449985 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 659 465 299 74 7 chr1 9745457 9745592 -187449840 - RSINE1 SINE B4 -20 145 2 4 659 207 88 0 0 chr1 9745717 9745751 -187449681 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 659 23 0 0 0 chr1 9746024 9746047 -187449385 + AT_rich Low_complexity Low_complexity 1 23 0 4 659 359 307 48 103 chr1 9746180 9746498 -187448934 + B4 SINE B4 1 272 -20 4 659 711 140 0 0 chr1 9746517 9746674 -187448758 + (TC)n Simple_repeat Simple_repeat 1 157 0 4 659 333 155 0 0 chr1 9746673 9746731 -187448701 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 659 540 280 172 35 chr1 9746746 9747146 -187448286 - L1MC4 LINE L1 -25 8017 7563 4 659 298 268 22 79 chr1 9747152 9747241 -187448191 - PB1D10 SINE Alu -36 112 28 4 659 351 0 0 0 chr1 9747242 9747281 -187448151 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 659 192 179 0 0 chr1 9747349 9747388 -187448044 + CT-rich Low_complexity Low_complexity 2 40 0 5 659 283 253 36 12 chr1 9747511 9747595 -187447837 - L1M5 LINE L1 -3394 2752 2667 5 659 569 125 523 0 chr1 9748572 9748723 -187446709 - RMER1C Other Other 0 1342 1113 5 659 258 32 0 0 chr1 9749155 9749186 -187446246 + (T)n Simple_repeat Simple_repeat 1 31 0 5 659 3781 36 22 5 chr1 9749282 9749726 -187445706 - L1Md_F2 LINE L1 -2 6580 6129 5 659 1306 156 135 38 chr1 9749883 9750150 -187445282 - RMER1C Other Other -214 1128 836 5 659 261 178 0 0 chr1 9750327 9750372 -187445060 + PB1D10 SINE Alu 71 115 -2 5 659 743 265 39 6 chr1 9750546 9750728 -187444704 + B3A SINE B2 2 189 -9 5 659 745 142 110 15 chr1 9750857 9750993 -187444439 - B1_Mur3 SINE Alu 0 149 1 5 659 615 224 267 12 chr1 9751016 9751188 -187444244 - B3 SINE B2 0 216 1 5 659 570 302 73 10 chr1 9751798 9752002 -187443430 - ID_B1 SINE B4 -7 217 1 5 659 526 156 33 0 chr1 9752114 9752204 -187443228 - B2_Mm1a SINE B2 -10 183 91 5 659 1084 83 0 129 chr1 9752258 9752411 -187443021 - B2_Mm1a SINE B2 -23 170 35 5 659 1803 21 0 0 chr1 9752411 9752603 -187442829 - B2_Mm1t SINE B2 0 193 2 5 659 1084 83 0 129 chr1 9752603 9752643 -187442789 - B2_Mm1a SINE B2 -159 34 2 5 659 1191 75 0 20 chr1 9752780 9752930 -187442502 + B1_Mus1 SINE Alu 2 148 0 5 659 1515 208 104 35 chr1 9753112 9753486 -187441946 - MTD LTR MaLR -14 405 6 5 659 1432 82 5 16 chr1 9753635 9753820 -187441612 + B2_Mm1a SINE B2 1 183 -10 5 659 1292 27 0 13 chr1 9753820 9753968 -187441464 + B1_Mus2 SINE Alu 1 147 0 5 659 185 283 0 0 chr1 9754082 9754128 -187441304 - L2b LINE L2 0 3375 3330 5 659 282 316 0 37 chr1 9754568 9754650 -187440782 - MIRc SINE MIR -125 143 65 5 659 858 240 5 80 chr1 9754800 9755013 -187440419 + B3A SINE B2 2 198 0 5 659 360 160 146 91 chr1 9755054 9755164 -187440268 + PB1D9 SINE Alu 5 120 0 5 659 420 20 0 0 chr1 9755443 9755492 -187439940 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 659 614 295 102 9 chr1 9755520 9755746 -187439686 - B4 SINE B4 -44 248 2 5 659 25 0 0 0 chr1 9755787 9755812 -187439620 + AT_rich Low_complexity Low_complexity 1 25 0 5 659 284 295 61 69 chr1 9755823 9755867 -187439565 - RSINE1 SINE B4 -34 131 2 5 659 539 161 0 0 chr1 9755867 9755954 -187439478 - B3A SINE B2 -111 87 1 5 659 1220 220 5 14 chr1 9756021 9756233 -187439199 - B3 SINE B2 -4 212 3 5 659 714 225 114 11 chr1 9756246 9756430 -187439002 - L1MB2 LINE L1 -52 6119 5917 5 659 603 289 30 6 chr1 9756458 9756625 -187438807 + L1MD3 LINE L1 7720 7890 -105 5 659 974 90 14 0 chr1 9756703 9756847 -187438585 + URR1A DNA MER1_type 81 226 0 5 659 769 260 23 0 chr1 9756848 9757025 -187438407 + MTE2b LTR MaLR 36 216 -163 5 659 430 81 48 0 chr1 9757082 9757144 -187438288 + B3A SINE B2 19 83 -115 5 659 514 295 85 26 chr1 9757232 9757385 -187438047 + RSINE1 SINE B4 4 165 0 5 659 365 305 0 0 chr1 9757430 9757512 -187437920 - ID4 SINE ID 0 83 2 5 659 232 316 37 37 chr1 9757585 9757667 -187437765 + MARNA DNA Mariner 106 187 -399 5 659 564 219 36 79 chr1 9757792 9757931 -187437501 - RLTR13D5 LTR ERVK 0 1023 891 5 659 2028 67 127 0 chr1 9757922 9758206 -187437226 - RLTR13D5 LTR ERVK -703 320 1 5 659 617 183 35 0 chr1 9758269 9758384 -187437048 + B1_Mur2 SINE Alu 29 147 -2 5 659 996 167 57 10 chr1 9758484 9758678 -187436754 + ORR1D1 LTR MaLR 6 208 -166 5 659 978 169 12 6 chr1 9758680 9758853 -187436579 + RLTR26 LTR ERVK 1 174 -468 5 659 1124 198 95 82 chr1 9758849 9759240 -187436192 + RMER17B LTR ERVK 560 955 -3 5 659 602 178 101 38 chr1 9759280 9759438 -187435994 + ORR1D1 LTR MaLR 179 384 0 5 659 38 22 0 0 chr1 9759484 9759529 -187435903 + AT_rich Low_complexity Low_complexity 1 45 0 5 659 251 128 149 0 chr1 9759566 9759613 -187435819 - ID_B1 SINE B4 -6 218 165 5 659 27 0 0 0 chr1 9759632 9759659 -187435773 + AT_rich Low_complexity Low_complexity 1 27 0 5 659 355 93 25 0 chr1 9759659 9759735 -187435697 - B1_Mm SINE Alu 0 147 40 5 659 844 199 274 36 chr1 9759742 9760147 -187435285 - RMER4B LTR ERVK -137 448 1 5 659 269 289 139 35 chr1 9760147 9760225 -187435207 - ID_B1 SINE B4 -57 167 81 5 659 189 0 0 0 chr1 9760250 9760271 -187435161 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 659 204 125 0 0 chr1 9760271 9760302 -187435130 + (CG)n Simple_repeat Simple_repeat 2 33 0 5 659 471 243 109 14 chr1 9760312 9760450 -187434982 - B3A SINE B2 -47 151 1 5 659 425 305 34 8 chr1 9760466 9760585 -187434847 - B1F2 SINE Alu -27 122 1 5 659 875 197 28 0 chr1 9761259 9761401 -187434031 - B1_Mur1 SINE Alu -3 146 1 5 659 299 191 0 0 chr1 9761492 9761539 -187433893 - PB1D9 SINE Alu -71 49 3 5 659 218 231 39 156 chr1 9761539 9761564 -187433868 - B4A SINE B4 -151 136 74 5 659 479 305 45 30 chr1 9761616 9761748 -187433684 - RSINE1 SINE B4 -8 157 24 5 659 227 150 131 16 chr1 9761780 9761841 -187433591 + PB1D10 SINE Alu 48 115 -2 5 659 342 0 0 0 chr1 9761884 9761922 -187433510 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 659 310 109 36 0 chr1 9761922 9761977 -187433455 + MTD LTR MaLR 356 412 -7 5 659 222 37 0 0 chr1 9761991 9762018 -187433414 + (CCA)n Simple_repeat Simple_repeat 1 27 0 5 659 535 246 26 17 chr1 9762302 9762418 -187433014 + PB1D10 SINE Alu 1 117 0 5 659 261 289 60 0 chr1 9762535 9762618 -187432814 - PB1D7 SINE Alu -27 93 6 5 659 22 70 0 0 chr1 9762855 9762898 -187432534 + AT_rich Low_complexity Low_complexity 1 43 0 5 659 234 0 0 0 chr1 9763314 9763340 -187432092 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 5 659 214 135 58 0 chr1 9763513 9763565 -187431867 + GA-rich Low_complexity Low_complexity 3 57 0 5 659 328 318 38 60 chr1 9763650 9763834 -187431598 + LTR40c LTR ERVL 206 385 -80 5 659 1692 47 0 0 chr1 9764026 9764218 -187431214 + B2_Mm1t SINE B2 1 192 -1 5 659 227 213 115 0 chr1 9764588 9764649 -187430783 + LTR40c LTR ERVL 429 496 -23 5 659 210 247 108 123 chr1 9764757 9764937 -187430495 - MIRm SINE MIR -30 232 45 5 659 267 152 0 0 chr1 9764998 9765044 -187430388 + (ATG)n Simple_repeat Simple_repeat 2 47 0 5 659 330 277 0 47 chr1 9765182 9765288 -187430144 - PB1D10 SINE Alu -8 109 9 5 659 603 303 189 28 chr1 9765309 9765375 -187430057 - B4A SINE B4 -4 288 201 5 659 486 0 0 0 chr1 9765375 9765429 -187430003 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 659 603 303 189 28 chr1 9765429 9765610 -187429822 - B4A SINE B4 -92 200 1 5 659 451 275 14 40 chr1 9765784 9765932 -187429500 + ORR1E LTR MaLR 6 149 -210 5 659 1408 262 77 28 chr1 9766126 9766656 -187428776 + L1MC1 LINE L1 5708 6263 -70 5 659 405 0 0 0 chr1 9766701 9766746 -187428686 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 659 470 298 22 37 chr1 9766748 9766884 -187428548 - RSINE1 SINE B4 -29 136 3 5 659 294 197 0 108 chr1 9766884 9766958 -187428474 + ORR1E LTR MaLR 313 378 -1 5 659 266 321 31 61 chr1 9766962 9767079 -187428353 + MER102c DNA MER1_type 140 248 -83 5 659 9352 86 12 112 chr1 9767196 9767761 -187427671 - L1_Mm LINE L1 -68 5815 5347 5 659 396 96 0 0 chr1 9767761 9767813 -187427619 - B1_Mus2 SINE Alu -95 52 1 5 659 9352 86 12 112 chr1 9767813 9767869 -187427563 - L1_Mm LINE L1 -68 5346 5299 5 659 1245 68 0 0 chr1 9767869 9768016 -187427416 - B1_Mus2 SINE Alu 0 147 1 5 659 9352 86 12 112 chr1 9768016 9768484 -187426948 - L1_Mm LINE L1 -585 5298 4839 5 659 4687 6 0 0 chr1 9768484 9768966 -187426466 - LTRIS_Mm LTR ERV1 0 482 1 5 659 9352 86 12 112 chr1 9768966 9769066 -187426366 - L1_Mm LINE L1 -1045 4838 4739 5 659 180 0 0 0 chr1 9769066 9769086 -187426346 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 659 9352 86 12 112 chr1 9769086 9769434 -187425998 - L1_Mm LINE L1 -1145 4738 4385 5 659 6540 55 0 1 chr1 9769434 9770187 -187425245 + L1_Mus2 LINE L1 5815 6566 0 5 659 1334 94 44 0 chr1 9770199 9770380 -187425052 + B2_Mm2 SINE B2 1 189 -6 5 659 236 258 131 20 chr1 9770499 9770598 -187424834 + MIRb SINE MIR 93 202 -66 5 659 692 125 0 46 chr1 9770906 9771015 -187424417 + B1_Mm SINE Alu 35 138 -9 5 659 270 21 20 41 chr1 9771015 9771064 -187424368 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 5 659 777 282 134 4 chr1 9771125 9771371 -187424061 + B4A SINE B4 6 283 -9 5 659 279 0 0 0 chr1 9771374 9771405 -187424027 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 659 782 67 0 0 chr1 9771405 9771510 -187423922 - B1_Mus1 SINE Alu -9 139 35 5 659 295 324 48 75 chr1 9771589 9771776 -187423656 - MLT1D LTR MaLR -4 501 320 5 659 42 20 0 0 chr1 9771778 9771827 -187423605 + AT_rich Low_complexity Low_complexity 1 49 0 5 659 180 200 0 0 chr1 9771923 9771978 -187423454 + T-rich Low_complexity Low_complexity 1 55 0 5 659 1306 288 16 105 chr1 9772428 9773106 -187422326 - Lx6 LINE L1 -1725 5735 5114 5 659 955 115 6 6 chr1 9773117 9773275 -187422157 + (TTC)n Simple_repeat Simple_repeat 2 159 0 5 659 611 217 70 28 chr1 9773319 9773461 -187421971 - B1_Mur2 SINE Alu -1 148 1 5 659 612 101 0 0 chr1 9773478 9773567 -187421865 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 5 659 808 189 73 22 chr1 9773654 9773833 -187421599 - Lx6 LINE L1 0 7460 7273 5 659 745 196 141 34 chr1 9774207 9774413 -187421019 - Lx6 LINE L1 -2 7458 7231 5 659 281 119 0 157 chr1 9774414 9774484 -187420948 + B1_Mur4 SINE Alu 1 59 -91 5 659 605 128 19 13 chr1 9774485 9774643 -187420789 + GA-rich Low_complexity Low_complexity 4 162 0 6 659 255 123 113 0 chr1 9774660 9774766 -187420666 + (CAGG)n Simple_repeat Simple_repeat 2 119 0 6 659 260 182 136 39 chr1 9774772 9774875 -187420557 + RLTR25B LTR ERVK 398 510 -518 6 659 770 75 0 0 chr1 9774811 9774917 -187420515 + B1_Mus2 SINE Alu 42 147 0 6 659 1896 222 65 5 chr1 9774917 9775354 -187420078 - Lx6 LINE L1 -148 7548 6821 6 659 216 67 0 0 chr1 9775356 9775386 -187420046 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 659 1223 49 14 0 chr1 9775386 9775530 -187419902 - B1_Mus2 SINE Alu 0 147 2 6 659 612 172 10 0 chr1 9775530 9775629 -187419803 - Lx6 LINE L1 -802 6658 6559 6 659 282 254 56 14 chr1 9775631 9775703 -187419729 - RSINE1 SINE B4 -80 85 11 6 659 824 254 114 4 chr1 9775734 9775979 -187419453 - L1M2 LINE L1 -1098 5045 4774 6 659 767 141 53 66 chr1 9776139 9776291 -187419141 - B1_Mur4 SINE Alu 0 150 1 6 659 783 162 0 0 chr1 9776306 9776448 -187418984 + GA-rich Low_complexity Low_complexity 3 144 0 6 659 828 148 13 84 chr1 9776467 9776622 -187418810 - B1_Mus1 SINE Alu -1 148 5 6 659 529 275 5 152 chr1 9776472 9776695 -187418737 - ID_B1 SINE B4 0 224 35 6 659 1399 106 11 0 chr1 9777011 9777200 -187418232 + B2_Mm1t SINE B2 2 192 -1 6 659 394 259 26 35 chr1 9777551 9777667 -187417765 + PB1D10 SINE Alu 2 116 -1 6 659 262 283 14 0 chr1 9778248 9778327 -187417105 + ID4_ SINE ID 12 91 -61 6 659 1025 78 28 0 chr1 9778762 9778904 -187416528 + B1_Mus1 SINE Alu 1 146 -2 6 659 1184 55 0 7 chr1 9779041 9779189 -187416243 - B1_Mus2 SINE Alu 0 147 1 6 659 752 213 57 71 chr1 9779201 9779413 -187416019 - B3 SINE B2 0 216 8 6 659 25 0 0 0 chr1 9779466 9779491 -187415941 + AT_rich Low_complexity Low_complexity 1 25 0 6 659 682 323 52 31 chr1 9779555 9779938 -187415494 - Charlie7 DNA MER1_type -312 2300 1910 6 659 262 242 106 0 chr1 9779987 9780053 -187415379 + PB1D10 SINE Alu 26 98 -19 6 659 465 138 0 0 chr1 9780268 9780348 -187415084 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 659 280 274 39 39 chr1 9780369 9780498 -187414934 - Charlie7 DNA MER1_type -906 1706 1578 6 659 490 220 11 0 chr1 9780549 9780640 -187414792 - MER2 DNA MER2_type -2 343 252 6 659 469 259 9 0 chr1 9780663 9780779 -187414653 + PB1D10 SINE Alu 1 117 0 6 659 1347 89 16 21 chr1 9780870 9781064 -187414368 + B2_Mm2 SINE B2 1 193 -2 6 659 336 246 167 0 chr1 9781071 9781185 -187414247 - MER2 DNA MER2_type -98 247 115 6 659 1267 222 84 29 chr1 9781453 9781605 -187413827 - Lx6 LINE L1 -26 7434 7286 6 659 4363 15 4 0 chr1 9781605 9782085 -187413347 + LTRIS_Mm LTR ERV1 1 482 0 6 659 1267 222 84 29 chr1 9782085 9782243 -187413189 - Lx6 LINE L1 -175 7285 7107 6 659 343 188 95 48 chr1 9782247 9782331 -187413101 - PB1D10 SINE Alu -5 112 25 6 659 804 276 55 61 chr1 9782527 9782870 -187412562 + MTEa LTR MaLR 1 341 -38 6 659 873 129 65 0 chr1 9783906 9784045 -187411387 - B1_Mus1 SINE Alu 0 148 1 6 659 481 185 167 16 chr1 9785201 9785327 -187410105 + B1_Mur1 SINE Alu 3 147 -2 6 659 1071 15 81 7 chr1 9785576 9785712 -187409720 - B1_Mm SINE Alu 0 147 2 6 659 780 259 101 0 chr1 9786371 9786618 -187408814 + B4A SINE B4 2 273 -19 6 659 375 41 0 0 chr1 9786649 9786698 -187408734 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 659 194 0 39 0 chr1 9788173 9788199 -187407233 + (CCCG)n Simple_repeat Simple_repeat 1 27 0 6 659 26 0 0 0 chr1 9788241 9788267 -187407165 + GC_rich Low_complexity Low_complexity 1 26 0 6 659 26 30 0 0 chr1 9788382 9788415 -187407017 + GC_rich Low_complexity Low_complexity 1 33 0 6 659 24 67 0 0 chr1 9788462 9788507 -187406925 + GC_rich Low_complexity Low_complexity 1 45 0 6 659 438 69 0 0 chr1 9788892 9788950 -187406482 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 659 222 159 23 0 chr1 9790179 9790223 -187405209 + L2a LINE L2 3379 3423 -3 6 659 24 0 0 0 chr1 9790457 9790481 -187404951 + AT_rich Low_complexity Low_complexity 1 24 0 6 659 251 291 44 26 chr1 9791571 9791684 -187403748 + PB1D10 SINE Alu 3 117 0 6 659 573 55 0 0 chr1 9792090 9792163 -187403269 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 659 260 228 0 17 chr1 9792933 9792991 -187402441 + (TATG)n Simple_repeat Simple_repeat 3 59 0 6 659 682 273 79 36 chr1 9792994 9793271 -187402161 - B4 SINE B4 -3 289 1 6 659 676 251 20 35 chr1 9793407 9793605 -187401827 + B4A SINE B4 54 248 -44 6 659 261 0 0 0 chr1 9793659 9793688 -187401744 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 659 453 265 8 17 chr1 9793816 9793935 -187401497 - PB1 SINE Alu -7 120 3 6 659 248 369 38 19 chr1 9793974 9794079 -187401353 + PB1D10 SINE Alu 2 108 -9 6 659 2239 303 61 21 chr1 9794217 9795056 -187400376 - Lx9 LINE L1 -344 7300 6429 6 659 922 193 32 41 chr1 9795145 9795366 -187400066 - L1_Rod LINE L1 -26 5821 5603 6 659 505 242 120 8 chr1 9795436 9795569 -187399863 - B1F SINE Alu 0 149 2 6 659 328 316 60 43 chr1 9795605 9795790 -187399642 + MamSINE1 SINE tRNA 21 208 -82 6 659 565 319 85 24 chr1 9796272 9796603 -187398829 - MamRep1161 DNA TcMar -329 628 278 6 659 515 299 90 55 chr1 9796603 9796649 -187398783 + Tigger16a DNA Tigger 302 691 -242 6 659 185 0 40 0 chr1 9796673 9796698 -187398734 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 659 237 65 0 0 chr1 9797061 9797092 -187398340 + (CGGG)n Simple_repeat Simple_repeat 1 31 0 6 659 1174 87 38 0 chr1 9797420 9797447 -187397985 - B2_Mm2 SINE B2 -3 192 159 6 659 183 80 0 0 chr1 9797447 9797472 -187397960 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 6 659 1174 87 38 0 chr1 9797472 9797629 -187397803 - B2_Mm2 SINE B2 -37 158 2 6 659 201 39 0 0 chr1 9797758 9797784 -187397648 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 6 659 474 135 28 21 chr1 9797788 9797902 -187397530 - B1_Mur4 SINE Alu 0 147 41 6 659 351 268 31 10 chr1 9798303 9798401 -187397031 - B3A SINE B2 -98 100 1 6 659 444 19 0 0 chr1 9798446 9798499 -187396933 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 6 659 1074 83 155 0 chr1 9798541 9798709 -187396723 - B2_Mm2 SINE B2 0 195 2 6 659 7088 86 67 86 chr1 9798710 9799745 -187395687 - Lx3_Mus LINE L1 -5 7004 5916 6 659 1361 50 0 16 chr1 9799745 9799928 -187395504 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 659 7088 86 67 86 chr1 9799928 9800122 -187395310 - Lx3_Mus LINE L1 -1094 5915 5799 6 659 2526 70 41 63 chr1 9800125 9800489 -187394943 + Lx3_Mus LINE L1 5457 5812 -74 6 659 253 343 80 50 chr1 9800588 9800889 -187394543 - ORR1E LTR MaLR -2 357 48 6 659 930 194 19 48 chr1 9801376 9801582 -187393850 + B3 SINE B2 3 202 -14 6 659 774 298 24 28 chr1 9802455 9802745 -187392687 - L1M4 LINE L1 -374 5810 5522 6 659 387 0 0 0 chr1 9802751 9802794 -187392638 + (TTATA)n Simple_repeat Simple_repeat 4 46 0 6 659 1199 56 0 0 chr1 9802797 9802939 -187392493 - B1_Mus1 SINE Alu -6 142 1 6 659 219 154 15 30 chr1 9802962 9803029 -187392403 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 659 363 278 70 44 chr1 9803029 9803187 -187392245 - RSINE1 SINE B4 0 165 4 6 659 454 232 39 99 chr1 9803237 9803419 -187392013 - L1M4 LINE L1 -707 5467 5297 6 659 863 284 77 20 chr1 9803457 9803909 -187391523 - L1M4 LINE L1 -2596 3550 3073 6 659 368 298 0 20 chr1 9803917 9804026 -187391406 - PB1 SINE Alu -21 96 1 6 659 723 212 48 18 chr1 9804050 9804218 -187391214 - B3A SINE B2 0 198 26 6 659 541 274 135 5 chr1 9804263 9804607 -187390825 - L1M4 LINE L1 -3175 2965 2561 6 659 651 159 35 0 chr1 9804745 9804858 -187390574 + B1_Mus1 SINE Alu 23 139 -9 6 659 1251 19 170 0 chr1 9805000 9805159 -187390273 - B2_Mm1t SINE B2 -7 186 1 6 659 22 0 0 0 chr1 9805651 9805673 -187389759 + AT_rich Low_complexity Low_complexity 1 22 0 6 659 240 255 42 36 chr1 9806237 9806326 -187389106 + MIR SINE MIR 33 120 -148 6 659 21 36 0 0 chr1 9806370 9806398 -187389034 + AT_rich Low_complexity Low_complexity 1 28 0 6 659 393 230 126 8 chr1 9807041 9807168 -187388264 + B1F SINE Alu 6 147 -2 6 659 483 321 0 41 chr1 9807377 9807523 -187387909 - ID_B1 SINE B4 -8 216 77 6 659 1352 217 8 50 chr1 9807722 9808120 -187387312 + RMER17C LTR ERVK 1 381 -29 6 659 225 0 0 0 chr1 9808122 9808147 -187387285 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 659 301 213 13 51 chr1 9808241 9808320 -187387112 - B2_Mm2 SINE B2 -118 77 2 6 659 360 0 0 0 chr1 9808375 9808415 -187387017 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 659 776 273 24 0 chr1 9808466 9808671 -187386761 - ID_B1 SINE B4 -14 210 1 6 659 48 0 0 0 chr1 9808719 9808767 -187386665 + AT_rich Low_complexity Low_complexity 1 48 0 6 659 235 308 25 13 chr1 9808956 9809035 -187386397 - MER2B DNA MER2_type -171 165 86 6 659 575 274 39 7 chr1 9809200 9809354 -187386078 + RSINE1 SINE B4 3 161 -4 6 659 336 48 0 0 chr1 9809780 9809822 -187385610 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 659 474 286 124 21 chr1 9809866 9810052 -187385380 - B4 SINE B4 0 292 88 6 659 425 315 32 71 chr1 9810144 9810298 -187385134 - B4 SINE B4 -144 148 1 6 659 441 0 0 0 chr1 9810306 9810355 -187385077 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 659 280 296 14 0 chr1 9810355 9810426 -187385006 - ID4 SINE ID -11 72 1 6 659 414 309 45 0 chr1 9810451 9810561 -187384871 - B1F1 SINE Alu -10 139 25 6 659 452 296 30 0 chr1 9810591 9810726 -187384706 - ID_B1 SINE B4 -4 220 82 6 659 459 233 339 30 chr1 9811155 9811323 -187384109 + ID_B1 SINE B4 5 224 0 6 659 1095 284 59 41 chr1 9811340 9811780 -187383652 + L1_Mur3 LINE L1 5128 5575 -272 6 659 1427 90 0 5 chr1 9811905 9812095 -187383337 - B2_Mm2 SINE B2 -6 189 1 7 659 300 280 21 0 chr1 9813061 9813154 -187382278 - B4A SINE B4 -14 278 184 7 659 210 143 0 0 chr1 9813365 9813400 -187382032 + (T)n Simple_repeat Simple_repeat 1 35 0 7 659 401 315 56 0 chr1 9813558 9813701 -187381731 - B3A SINE B2 -43 155 5 7 659 245 317 79 0 chr1 9814278 9814379 -187381053 + MER112 DNA MER1_type 1 109 -152 7 659 396 293 43 16 chr1 9814489 9814673 -187380759 - HAL1 LINE L1 -917 1590 1402 7 659 549 0 0 0 chr1 9815040 9815101 -187380331 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 7 659 608 167 58 8 chr1 9815104 9815225 -187380207 - B1_Mur4 SINE Alu -6 144 18 7 659 304 235 12 36 chr1 9815227 9815311 -187380121 - U6 snRNA snRNA -23 84 3 7 659 1120 68 0 7 chr1 9815341 9815489 -187379943 + B1_Mus2 SINE Alu 1 147 0 7 659 558 252 57 38 chr1 9815507 9815717 -187379715 + B4 SINE B4 6 219 -73 7 659 288 0 0 0 chr1 9815736 9815768 -187379664 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 659 388 250 18 35 chr1 9815872 9816042 -187379390 + (GGATG)n Simple_repeat Simple_repeat 4 170 0 7 659 852 228 39 5 chr1 9816405 9816608 -187378824 - B3 SINE B2 -5 211 2 7 659 1190 61 0 0 chr1 9816679 9816827 -187378605 - B1_Mus1 SINE Alu 0 148 1 7 659 390 206 372 0 chr1 9816837 9816939 -187378493 - B1_Mur3 SINE Alu -7 142 3 7 659 370 290 0 10 chr1 9816953 9817054 -187378378 - PB1D10 SINE Alu -8 109 10 7 659 235 338 12 0 chr1 9817083 9817163 -187378269 - ID4_ SINE ID -1 82 2 7 659 1224 161 65 0 chr1 9817325 9817524 -187377908 - B3 SINE B2 -3 213 2 7 659 405 0 0 0 chr1 9817959 9818004 -187377428 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 7 659 439 231 45 36 chr1 9818681 9818793 -187376639 + PB1D10 SINE Alu 4 116 -1 7 659 419 271 37 0 chr1 9819153 9819260 -187376172 + PB1D7 SINE Alu 4 114 -6 7 659 537 243 52 52 chr1 9820180 9820371 -187375061 - B3A SINE B2 -4 194 4 7 659 225 0 0 0 chr1 9820464 9820489 -187374943 + (TTG)n Simple_repeat Simple_repeat 2 26 0 7 659 1171 86 114 0 chr1 9820549 9820724 -187374708 - B2_Mm2 SINE B2 0 195 1 7 659 1156 167 120 19 chr1 9820742 9821227 -187374205 - RMER6A LTR ERVK -44 712 99 7 659 414 0 0 0 chr1 9821239 9821285 -187374147 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 659 1256 27 0 0 chr1 9821777 9821924 -187373508 - B1_Mus2 SINE Alu 0 147 1 7 659 24 0 0 0 chr1 9821968 9821992 -187373440 + AT_rich Low_complexity Low_complexity 1 24 0 7 659 592 157 156 59 chr1 9822020 9822155 -187373277 - B1_Mur4 SINE Alu 0 150 3 7 659 1388 84 21 16 chr1 9822171 9822365 -187373067 - B2_Mm2 SINE B2 0 195 1 7 659 289 0 0 47 chr1 9822374 9822417 -187373015 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 659 542 250 83 0 chr1 9822425 9822545 -187372887 - B1_Mur1 SINE Alu -19 130 1 7 659 431 186 126 10 chr1 9822702 9822805 -187372627 - PB1D10 SINE Alu -2 115 1 7 659 882 219 85 13 chr1 9823226 9823462 -187371970 - MTD LTR MaLR 0 419 167 7 659 384 275 0 0 chr1 9824487 9824567 -187370865 - ID4 SINE ID -3 80 1 7 659 231 342 16 64 chr1 9824692 9824817 -187370615 - PB1 SINE Alu -7 120 2 7 659 551 306 19 78 chr1 9824838 9825146 -187370286 + B4A SINE B4 2 291 -1 7 659 282 312 130 34 chr1 9826011 9826157 -187369275 + MLT1B LTR MaLR 231 390 0 7 659 3382 31 15 0 chr1 9826158 9826548 -187368884 - MTA_Mm LTR MaLR 0 396 1 7 659 1284 67 0 41 chr1 9826548 9826720 -187368712 + L1Md_F2 LINE L1 5422 5586 -297 7 659 7957 62 0 10 chr1 9826720 9827724 -187367708 + L1Md_F2 LINE L1 5587 6580 -2 7 659 224 186 254 14 chr1 9827782 9827853 -187367579 + B1F SINE Alu 10 97 -52 7 659 180 0 0 0 chr1 9827859 9827879 -187367553 + (T)n Simple_repeat Simple_repeat 1 20 0 7 659 996 45 0 0 chr1 9827879 9828011 -187367421 - B1_Mm SINE Alu 0 147 16 7 659 741 317 39 61 chr1 9828054 9828333 -187367099 + B4A SINE B4 2 274 -18 7 659 486 0 0 0 chr1 9828337 9828391 -187367041 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 659 268 200 28 49 chr1 9828718 9828809 -187366623 + MTC LTR MaLR 6 89 -330 7 659 351 266 123 101 chr1 9828854 9829180 -187366252 + MT2A LTR ERVL 198 530 -3 7 659 642 222 8 0 chr1 9829299 9829425 -187366007 + RSINE1 SINE B4 4 130 -35 7 659 1362 228 60 15 chr1 9829431 9829831 -187365601 + Lx7 LINE L1 5682 6099 -1597 7 659 387 0 0 0 chr1 9829911 9829954 -187365478 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 82 505 272 131 3 chr1 9830125 9830416 -187365016 - Charlie1a DNA MER1_type -172 1283 956 7 660 523 200 212 2 chr1 9830435 9830594 -187364838 - B3A SINE B2 -8 187 1 7 660 262 262 155 0 chr1 9830627 9830711 -187364721 - PB1D10 SINE Alu -11 106 10 7 660 249 329 77 31 chr1 9830804 9830903 -187364529 - MLT1B LTR MaLR 0 390 293 7 660 1261 187 206 3 chr1 9830903 9831209 -187364223 - ORR1D1 LTR MaLR -2 372 5 7 660 249 329 77 31 chr1 9831209 9831369 -187364063 - MLT1B LTR MaLR -98 292 120 7 660 1185 276 70 53 chr1 9831422 9831512 -187363920 - Charlie1a DNA MER1_type -579 876 794 7 660 1490 67 0 30 chr1 9831512 9831711 -187363721 - B2_Mm2 SINE B2 -1 194 2 7 660 1185 276 70 53 chr1 9831711 9832149 -187363283 - Charlie1a DNA MER1_type -662 793 339 7 660 226 289 16 81 chr1 9832218 9832260 -187363172 - BC1_Mm scRNA scRNA -22 130 87 7 660 786 49 205 31 chr1 9832260 9832387 -187363045 - B1_Mur3 SINE Alu 0 149 1 7 660 239 289 16 81 chr1 9832387 9832468 -187362964 - ID4 SINE ID -66 86 15 7 660 3706 92 69 42 chr1 9832504 9832967 -187362465 - Lx3C LINE L1 -467 6509 6044 7 660 567 43 0 0 chr1 9832967 9833037 -187362395 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 7 660 3706 92 69 42 chr1 9833037 9833171 -187362261 - Lx3C LINE L1 -933 6043 5897 7 660 560 251 34 105 chr1 9833172 9833381 -187362051 - B3A SINE B2 -3 195 2 7 660 684 284 78 0 chr1 9833392 9833596 -187361836 - Charlie1a DNA MER1_type -1203 252 33 7 660 295 256 86 86 chr1 9833968 9834165 -187361267 - L1MC5 LINE L1 -581 7380 7184 7 660 264 157 0 67 chr1 9834170 9834245 -187361187 + T-rich Low_complexity Low_complexity 2 71 0 7 660 451 241 80 7 chr1 9834792 9834930 -187360502 - B1F2 SINE Alu 0 149 2 7 660 1062 187 18 22 chr1 9835174 9835398 -187360034 - URR1B DNA MER1_type 0 225 3 7 660 997 52 58 22 chr1 9835468 9835605 -187359827 - B1_Mus2 SINE Alu -1 146 5 7 660 1636 22 22 0 chr1 9835744 9835929 -187359503 - B2_Mm1a SINE B2 -4 189 1 7 660 806 214 37 5 chr1 9836033 9836221 -187359211 - B3A SINE B2 -4 194 1 7 660 325 237 66 0 chr1 9836248 9836324 -187359108 + RSINE1 SINE B4 4 84 -81 7 660 303 113 0 0 chr1 9836562 9836615 -187358817 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 660 1130 65 0 0 chr1 9836963 9837102 -187358330 + B1_Mus2 SINE Alu 2 140 -7 7 660 298 0 48 0 chr1 9837102 9837144 -187358288 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 660 273 236 54 33 chr1 9837687 9837779 -187357653 - ID_B1 SINE B4 -16 208 115 7 660 338 239 0 103 chr1 9839499 9839629 -187355803 + B1F SINE Alu 3 113 -7 7 660 244 333 73 7 chr1 9840338 9840474 -187354958 + L2a LINE L2 3255 3399 -27 7 660 434 211 83 10 chr1 9841760 9841856 -187353576 - PB1D10 SINE Alu -13 104 2 7 660 241 274 129 0 chr1 9842114 9842176 -187353256 + PB1D10 SINE Alu 36 105 -12 7 660 207 0 0 0 chr1 9843766 9843789 -187351643 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 7 660 1051 279 137 7 chr1 9844014 9844555 -187350877 - L1MC1 LINE L1 -58 6275 5665 7 660 592 295 36 6 chr1 9845042 9845209 -187350223 - B3A SINE B2 -6 192 21 7 660 311 274 156 0 chr1 9845213 9845348 -187350084 - L1MC1 LINE L1 -729 5604 5449 7 660 222 224 20 0 chr1 9845360 9845409 -187350023 + CT-rich Low_complexity Low_complexity 5 54 0 7 660 421 167 19 68 chr1 9845462 9845565 -187349867 - L1MC1 LINE L1 -884 5449 5352 7 660 305 280 111 74 chr1 9845612 9845720 -187349712 - RSINE1 SINE B4 -19 146 35 7 660 262 305 21 0 chr1 9845861 9845956 -187349476 - L1MC1 LINE L1 -862 5284 5188 7 660 350 245 37 9 chr1 9845969 9846060 -187349372 - L1MC1 LINE L1 -1033 5113 5019 7 660 267 60 60 0 chr1 9846060 9846110 -187349322 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 660 350 245 37 9 chr1 9846110 9846125 -187349307 - L1MC1 LINE L1 -1128 5018 5005 7 660 261 0 0 0 chr1 9846233 9846262 -187349170 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 7 660 277 259 48 24 chr1 9846393 9846476 -187348956 - PB1 SINE Alu -32 95 11 7 660 637 243 56 0 chr1 9846409 9846553 -187348879 - ID_B1 SINE B4 -66 158 7 7 660 712 171 13 58 chr1 9846807 9846962 -187348470 - B1_Mur4 SINE Alu 0 150 3 7 660 371 288 96 24 chr1 9847115 9847282 -187348150 - Lx8 LINE L1 -10 7463 7285 7 660 1973 162 53 87 chr1 9847283 9847755 -187347677 + RMER13B LTR ERVK 1 456 -452 7 660 638 243 87 70 chr1 9847748 9847978 -187347454 + RMER13B LTR ERVK 666 899 -9 7 660 373 259 234 6 chr1 9848066 9848241 -187347191 - MER20 DNA MER1_type -4 215 1 7 660 249 159 0 0 chr1 9848532 9848576 -187346856 + (TTA)n Simple_repeat Simple_repeat 2 45 0 7 660 545 240 0 23 chr1 9848840 9848968 -187346464 + PB1 SINE Alu 1 125 -2 7 660 602 339 65 28 chr1 9849642 9849727 -187345705 - ERVL-B4-int LTR ERVL -2949 2765 2674 7 660 1407 160 4 0 chr1 9849727 9849952 -187345480 - URR1A DNA MER1_type 0 226 1 7 660 602 339 65 28 chr1 9849952 9850330 -187345102 - ERVL-B4-int LTR ERVL -3041 2673 2285 7 660 198 0 0 0 chr1 9850360 9850382 -187345050 + (T)n Simple_repeat Simple_repeat 1 22 0 7 660 469 321 60 15 chr1 9850631 9850830 -187344602 - ERVL-B4-int LTR ERVL -3694 1973 1766 7 660 4797 200 176 46 chr1 9851479 9851686 -187343746 - Lx6 LINE L1 -2 7458 7230 7 660 1134 68 0 45 chr1 9851686 9851841 -187343591 + B1_Mus1 SINE Alu 1 148 0 7 660 4797 200 176 46 chr1 9851841 9852218 -187343214 - Lx6 LINE L1 -231 7229 6879 7 660 540 0 0 0 chr1 9852218 9852278 -187343154 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 660 4797 200 176 46 chr1 9852278 9852986 -187342446 - Lx6 LINE L1 -582 6878 5998 7 660 10717 158 54 12 chr1 9853013 9854674 -187340758 - Lx6 LINE L1 -1540 5920 4204 7 660 372 94 0 0 chr1 9854674 9854727 -187340705 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 660 10717 158 54 12 chr1 9854727 9855128 -187340304 - Lx6 LINE L1 -1677 4203 3767 7 660 762 163 49 7 chr1 9855595 9855737 -187339695 + B1_Mur4 SINE Alu 3 150 0 8 660 548 29 0 14 chr1 9856897 9856968 -187338464 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 660 420 20 0 0 chr1 9857853 9857902 -187337530 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 660 1269 106 39 0 chr1 9858100 9858280 -187337152 + B2_Mm2 SINE B2 1 187 -8 8 660 820 72 0 0 chr1 9860238 9860349 -187335083 + B1_Mm SINE Alu 37 147 0 8 660 21 0 0 0 chr1 9860521 9860542 -187334890 + AT_rich Low_complexity Low_complexity 1 21 0 8 660 312 171 179 26 chr1 9860589 9860667 -187334765 + B4 SINE B4 80 169 -123 8 660 451 122 165 11 chr1 9860602 9860693 -187334739 + PB1D9 SINE Alu 6 110 -10 8 660 403 176 14 0 chr1 9861880 9861954 -187333478 - PB1D10 SINE Alu 0 117 43 8 660 1490 215 135 24 chr1 9862588 9862965 -187332467 - MTD LTR MaLR 0 419 1 8 660 851 234 50 0 chr1 9863981 9864182 -187331250 + B3 SINE B2 2 212 -4 8 660 224 288 0 0 chr1 9864242 9864301 -187331131 + ID_B1 SINE B4 80 138 -86 8 660 633 246 127 11 chr1 9864790 9864979 -187330453 + B3 SINE B2 1 211 -5 8 660 228 312 0 12 chr1 9864992 9865073 -187330359 + ID_B1 SINE B4 128 207 -17 8 660 275 264 47 9 chr1 9865169 9865276 -187330156 - L1ME3 LINE L1 -169 5993 5883 8 660 4073 35 25 0 chr1 9865322 9865803 -187329629 + MT2_Mm LTR ERVL 1 493 0 8 660 415 272 71 4 chr1 9866120 9866308 -187329124 + L1M5 LINE L1 5424 5626 -536 8 660 681 148 16 24 chr1 9866431 9866556 -187328876 - B1_Mus2 SINE Alu 0 147 24 8 660 501 295 33 33 chr1 9867613 9867827 -187327605 - B4A SINE B4 -64 228 15 8 660 244 250 139 37 chr1 9868567 9868675 -187326757 + B4A SINE B4 48 166 -126 8 660 33 0 0 0 chr1 9869161 9869194 -187326238 + AT_rich Low_complexity Low_complexity 1 33 0 8 660 324 0 0 0 chr1 9869329 9869365 -187326067 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 660 498 17 0 0 chr1 9869365 9869423 -187326009 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 660 1163 68 0 13 chr1 9869492 9869641 -187325791 + B1_Mus2 SINE Alu 1 147 0 8 660 30 59 0 0 chr1 9869698 9869749 -187325683 + AT_rich Low_complexity Low_complexity 1 51 0 8 660 517 71 34 45 chr1 9869903 9869992 -187325440 + B2_Mm2 SINE B2 108 195 0 8 660 398 294 48 0 chr1 9871207 9871333 -187324099 - RSINE1 SINE B4 -33 132 1 8 660 813 161 0 14 chr1 9872934 9873079 -187322353 + B1_Mur2 SINE Alu 1 143 -6 8 660 233 163 20 0 chr1 9873079 9873128 -187322304 + GA-rich Low_complexity Low_complexity 1 50 0 8 660 505 264 0 32 chr1 9873659 9873784 -187321648 - B1F1 SINE Alu -27 122 2 8 660 225 94 0 0 chr1 9873784 9873816 -187321616 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 660 283 228 79 51 chr1 9874816 9874925 -187320507 + L1MD1 LINE L1 5895 5998 -361 8 660 1417 84 16 5 chr1 9874925 9875117 -187320315 + B2_Mm2 SINE B2 2 195 0 8 660 258 313 105 102 chr1 9875117 9875456 -187319976 + L1MD1 LINE L1 5999 6344 -15 8 660 386 254 122 61 chr1 9875483 9875549 -187319883 + ID SINE ID 9 82 -142 8 660 207 0 0 0 chr1 9875549 9875572 -187319860 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 660 386 254 122 61 chr1 9875572 9875652 -187319780 + ID_B1 SINE B4 83 163 -61 8 660 878 273 85 8 chr1 9876877 9877135 -187318297 - B4A SINE B4 -6 286 9 8 660 471 78 0 0 chr1 9877288 9877352 -187318080 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 660 1110 88 0 13 chr1 9877415 9877564 -187317868 + B1_Mus2 SINE Alu 1 147 0 8 660 1740 137 130 67 chr1 9878110 9878471 -187316961 - ORR1C2 LTR MaLR 0 384 1 8 660 452 214 0 176 chr1 9878697 9878867 -187316565 - B1_Mur1 SINE Alu -5 144 5 8 660 260 312 151 0 chr1 9879388 9879481 -187315951 - PB1D10 SINE Alu -8 109 3 8 660 224 246 43 58 chr1 9879421 9879490 -187315942 - ID_B1 SINE B4 -79 145 78 8 660 439 218 35 26 chr1 9879516 9879629 -187315803 - PB1D9 SINE Alu -1 119 6 8 660 429 271 41 8 chr1 9879761 9879884 -187315548 + B3 SINE B2 1 127 -89 8 660 339 280 109 43 chr1 9880219 9880357 -187315075 + B3 SINE B2 57 203 -13 8 660 282 56 0 0 chr1 9881918 9881954 -187313478 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 660 746 300 39 11 chr1 9881989 9882272 -187313160 - B4A SINE B4 0 292 2 8 660 502 67 27 0 chr1 9882337 9882412 -187313020 + B1_Mus2 SINE Alu 71 147 0 8 660 435 304 121 89 chr1 9882831 9883113 -187312319 - B4 SINE B4 -1 291 1 8 660 369 62 0 0 chr1 9883584 9883632 -187311800 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 660 488 279 14 42 chr1 9883688 9883830 -187311602 - B3 SINE B2 -35 181 44 8 660 320 255 68 48 chr1 9883845 9883948 -187311484 - B3 SINE B2 0 216 112 8 660 261 200 0 104 chr1 9883946 9884013 -187311419 - B2_Mm2 SINE B2 -106 89 30 8 660 450 0 0 0 chr1 9884015 9884065 -187311367 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 660 1164 69 0 0 chr1 9884127 9884271 -187311161 + B1_Mus1 SINE Alu 2 145 -3 8 660 434 18 18 0 chr1 9884271 9884326 -187311106 + (TAA)n Simple_repeat Simple_repeat 2 57 0 8 660 688 177 146 0 chr1 9884446 9884576 -187310856 + B1_Mur3 SINE Alu 1 149 0 8 660 1400 95 11 0 chr1 9884590 9884779 -187310653 + B2_Mm1t SINE B2 1 191 -2 8 660 635 37 12 0 chr1 9884862 9884944 -187310488 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 8 660 2665 212 74 18 chr1 9884958 9885567 -187309865 - Lx7 LINE L1 -360 7336 6694 8 660 334 247 136 23 chr1 9885721 9885775 -187309657 - L1_Mur3 LINE L1 -4241 1645 1595 8 660 835 119 87 0 chr1 9885775 9885901 -187309531 - B1_Mur4 SINE Alu -13 137 1 8 660 609 175 200 14 chr1 9885901 9886117 -187309315 - L1_Mur3 LINE L1 -4285 1595 1341 8 660 1987 143 58 5 chr1 9886124 9886503 -187308929 - RMER15 LTR ERVL 0 575 177 8 660 314 185 77 0 chr1 9886532 9886597 -187308835 - RMER15 LTR ERVL -505 70 1 8 660 377 238 67 67 chr1 9886597 9886777 -187308655 - L1_Mur3 LINE L1 -6390 1338 1159 8 660 819 131 35 47 chr1 9886831 9887000 -187308432 - Lx3C LINE L1 0 6976 6810 8 660 1363 94 0 0 chr1 9887009 9887200 -187308232 + L1_Mur1 LINE L1 4750 4940 -946 8 660 1183 275 147 18 chr1 9887197 9887763 -187307669 - L1_Mur3 LINE L1 -6564 1164 526 8 660 210 71 0 0 chr1 9888523 9888551 -187306881 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 8 660 253 287 64 0 chr1 9891000 9891094 -187304338 - PB1D10 SINE Alu 0 117 18 8 660 481 265 139 7 chr1 9891596 9891733 -187303699 + RSINE1 SINE B4 1 155 -10 8 660 1255 48 0 20 chr1 9891769 9891919 -187303513 - B1_Mus1 SINE Alu -1 147 1 8 660 252 0 0 0 chr1 9893124 9893152 -187302280 + (A)n Simple_repeat Simple_repeat 1 28 0 8 660 431 313 61 8 chr1 9893220 9893352 -187302080 + RSINE1 SINE B4 4 142 -23 8 660 231 220 85 0 chr1 9893348 9893398 -187302034 + ID4_ SINE ID 14 67 -16 8 660 432 0 0 0 chr1 9893398 9893446 -187301986 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 660 713 271 26 0 chr1 9893454 9893609 -187301823 - B3A SINE B2 -38 160 2 8 660 441 194 123 65 chr1 9893734 9893888 -187301544 - Lx8 LINE L1 -2 7471 7309 8 660 230 301 137 8 chr1 9893890 9894014 -187301418 - L1_Rod LINE L1 -3625 2222 2083 8 660 941 285 81 19 chr1 9894195 9894503 -187300929 - ORR1E LTR MaLR -2 357 31 8 660 423 306 77 32 chr1 9894513 9895019 -187300413 - L1_Mur3 LINE L1 -4065 1815 1287 8 660 516 253 109 13 chr1 9895144 9895300 -187300132 - B3 SINE B2 -6 210 40 8 660 1452 94 16 16 chr1 9895605 9895799 -187299633 + B2_Mm2 SINE B2 2 195 0 8 660 180 0 0 0 chr1 9896197 9896217 -187299215 + (G)n Simple_repeat Simple_repeat 1 20 0 8 660 261 287 9 122 chr1 9896475 9896582 -187298850 - MLT1L LTR MaLR -343 267 173 8 660 923 309 70 41 chr1 9896646 9896990 -187298442 - MTEa LTR MaLR -24 355 2 8 660 376 229 0 24 chr1 9897620 9897705 -187297727 + B1F SINE Alu 66 148 -1 8 660 571 229 147 5 chr1 9897812 9897996 -187297436 + L1MB3 LINE L1 5785 5994 -189 8 660 316 200 59 0 chr1 9898040 9898125 -187297307 + L1MB3 LINE L1 6087 6176 -7 8 660 483 284 145 26 chr1 9898132 9898476 -187296956 - L1MB8 LINE L1 -144 6034 5650 8 660 443 181 92 25 chr1 9899024 9899143 -187296289 - B1_Mus1 SINE Alu -20 128 2 8 660 417 212 6 263 chr1 9899334 9899410 -187296022 - B1F1 SINE Alu -8 141 80 8 660 204 40 0 0 chr1 9899410 9899435 -187295997 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 660 417 212 6 263 chr1 9899435 9899537 -187295895 - B1F1 SINE Alu -70 79 9 8 660 25 0 0 0 chr1 9899826 9899851 -187295581 + AT_rich Low_complexity Low_complexity 1 25 0 8 660 360 270 141 16 chr1 9899999 9900127 -187295305 - B1_Mus2 SINE Alu -4 145 2 8 660 315 65 0 0 chr1 9900343 9900389 -187295043 + (TATG)n Simple_repeat Simple_repeat 2 47 0 8 660 221 159 68 0 chr1 9900393 9900437 -187294995 - ID4_ SINE ID -7 76 30 8 660 199 281 200 36 chr1 9900622 9900762 -187294670 + L2c LINE L2 3206 3368 -19 8 660 279 0 0 0 chr1 9901154 9901185 -187294247 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 660 540 235 76 0 chr1 9901206 9901325 -187294107 - RSINE1 SINE B4 -35 130 3 8 660 224 59 0 29 chr1 9901590 9901625 -187293807 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 660 272 231 30 30 chr1 9902462 9902529 -187292903 - RSINE1 SINE B4 -45 120 54 8 660 284 341 30 61 chr1 9902612 9902743 -187292689 - MTEa LTR MaLR -245 134 8 8 660 289 264 171 19 chr1 9902811 9902969 -187292463 - L1MC5 LINE L1 -53 7908 7727 8 660 1277 75 12 0 chr1 9902973 9903146 -187292286 - B2_Mm2 SINE B2 -20 175 1 8 660 4857 51 16 3 chr1 9903151 9903725 -187291707 - L1_Mus3 LINE L1 -4 6634 6054 9 660 21 36 0 0 chr1 9903822 9903850 -187291582 + AT_rich Low_complexity Low_complexity 1 28 0 9 660 581 241 82 15 chr1 9903874 9904009 -187291423 + ID_B1 SINE B4 68 211 -13 9 660 450 0 0 0 chr1 9904010 9904060 -187291372 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 660 372 250 0 0 chr1 9904546 9904614 -187290818 + ID4 SINE ID 5 72 -11 9 660 261 286 0 42 chr1 9904627 9904722 -187290710 - L1MC5 LINE L1 -841 7120 7030 8 660 279 0 0 0 chr1 9904777 9904808 -187290624 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 9 660 563 248 0 0 chr1 9904846 9904951 -187290481 + RSINE1 SINE B4 29 133 -32 9 660 1648 22 22 0 chr1 9904979 9905160 -187290272 - B2_Mm1a SINE B2 -7 186 2 9 660 392 306 14 21 chr1 9905165 9905325 -187290107 - L1MC5 LINE L1 -1140 6902 6668 8 660 397 191 0 0 chr1 9906213 9906281 -187289151 + PB1D10 SINE Alu 31 98 -19 9 660 216 0 0 0 chr1 9906284 9906308 -187289124 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 9 660 225 65 0 0 chr1 9906858 9906889 -187288543 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 660 335 23 23 0 chr1 9906889 9906933 -187288499 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 660 384 222 182 0 chr1 9906959 9907058 -187288374 + PB1D9 SINE Alu 2 118 -2 9 660 1420 90 32 0 chr1 9907306 9907495 -187287937 + B2_Mm2 SINE B2 1 195 0 9 660 465 71 0 0 chr1 9907620 9907690 -187287742 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 660 564 294 50 60 chr1 9907708 9907990 -187287442 - B4A SINE B4 -12 280 2 9 660 649 232 50 25 chr1 9908018 9908177 -187287255 + RSINE1 SINE B4 3 165 0 9 660 411 93 28 5 chr1 9908647 9908753 -187286679 - B2_Mm2 SINE B2 -7 188 47 9 660 1486 57 23 0 chr1 9908781 9908958 -187286474 - B2_Mm2 SINE B2 -14 181 1 9 660 197 333 77 0 chr1 9909259 9909337 -187286095 - L2b LINE L2 -2 3373 3290 9 660 1112 54 0 8 chr1 9909367 9909498 -187285934 - B1_Mus1 SINE Alu -17 131 2 9 660 297 0 0 0 chr1 9909694 9909727 -187285705 + (T)n Simple_repeat Simple_repeat 1 33 0 9 660 611 149 22 27 chr1 9909729 9909863 -187285569 - B1_Mur3 SINE Alu -3 147 2 9 660 846 164 50 7 chr1 9910896 9911037 -187284395 - B1_Mur2 SINE Alu -2 147 1 9 660 995 176 16 16 chr1 9911106 9911291 -187284141 - B2_Mm2 SINE B2 -10 185 1 9 660 225 0 0 0 chr1 9911315 9911340 -187284092 + (A)n Simple_repeat Simple_repeat 1 25 0 9 660 1313 226 65 11 chr1 9911362 9911715 -187283717 - MTD LTR MaLR -2 417 46 9 660 588 127 45 18 chr1 9911840 9911952 -187283480 - B1_Mm SINE Alu -7 140 26 9 660 451 284 11 179 chr1 9911952 9912095 -187283337 - ID_B1 SINE B4 0 215 7 9 660 373 328 129 26 chr1 9912157 9912258 -187283174 - L1M5 LINE L1 -1015 5131 5022 9 660 210 37 0 0 chr1 9912258 9912285 -187283147 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 9 660 373 328 129 26 chr1 9912285 9912319 -187283113 - L1M5 LINE L1 -1125 5021 4990 9 660 377 300 53 67 chr1 9912319 9912469 -187282963 - RSINE1 SINE B4 -15 150 3 9 660 373 328 129 26 chr1 9912469 9912680 -187282752 - L1M5 LINE L1 -1157 4989 4749 9 660 285 290 72 101 chr1 9912718 9912856 -187282576 - MER5B DNA MER1_type -44 134 1 9 660 225 270 54 0 chr1 9913101 9913175 -187282257 - MTE2a LTR MaLR -12 367 290 9 660 616 95 254 49 chr1 9913709 9913831 -187281601 + B1_Mur4 SINE Alu 3 149 -1 9 660 1293 48 0 0 chr1 9914437 9914584 -187280848 + B1_Mm SINE Alu 1 147 0 9 660 797 240 23 92 chr1 9914805 9915033 -187280399 - L1MC LINE L1 -2085 4061 3855 9 660 931 249 25 0 chr1 9915033 9915234 -187280198 - B3 SINE B2 -10 206 1 9 660 797 240 23 92 chr1 9915234 9915308 -187280124 - L1MC LINE L1 -2292 3854 3780 9 660 882 221 37 33 chr1 9915719 9915934 -187279498 - MTEb LTR MaLR -4 375 160 9 660 1754 194 67 25 chr1 9915962 9916191 -187279241 + ORR1D1 LTR MaLR 1 228 -146 9 660 324 0 0 0 chr1 9916191 9916227 -187279205 + (CCTG)n Simple_repeat Simple_repeat 3 38 0 9 660 1754 194 67 25 chr1 9916227 9916356 -187279076 + ORR1D1 LTR MaLR 229 373 -1 9 660 281 179 0 0 chr1 9916455 9916511 -187278921 + L1M5 LINE L1 5392 5447 -997 9 660 413 189 95 0 chr1 9916606 9916680 -187278752 + ID SINE ID 3 83 -141 9 660 407 244 14 0 chr1 9916950 9917061 -187278371 - L1MB8 LINE L1 -198 5986 5871 9 660 576 219 42 1 chr1 9917085 9917223 -187278209 + B1F SINE Alu 8 149 0 9 660 217 308 83 104 chr1 9917230 9917345 -187278087 + B2_Mm2 SINE B2 7 135 -60 9 660 306 0 0 0 chr1 9917345 9917379 -187278053 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 660 568 313 20 13 chr1 9917379 9917415 -187278017 + RSINE1 SINE B4 125 160 -5 9 660 217 308 83 104 chr1 9917415 9917455 -187277977 + B2_Mm2 SINE B2 136 194 -1 9 660 1663 217 40 19 chr1 9917509 9917885 -187277547 + ORR1C2 LTR MaLR 1 384 0 9 660 273 304 95 114 chr1 9917896 9917949 -187277483 + RLTR16 LTR ERVK 12 61 -499 9 660 2277 177 125 27 chr1 9917949 9918021 -187277411 - RLTR11A LTR ERVK 0 528 447 9 660 354 45 0 0 chr1 9918021 9918065 -187277367 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 660 2277 177 125 27 chr1 9918065 9918473 -187276959 - RLTR11A LTR ERVK -82 446 1 9 660 771 284 58 83 chr1 9918473 9918553 -187276879 + RLTR16 LTR ERVK 22 127 -433 9 660 1137 53 8 0 chr1 9918553 9918686 -187276746 + B1_Mus1 SINE Alu 2 135 -13 9 660 320 59 20 0 chr1 9918686 9918737 -187276695 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 9 660 771 281 69 59 chr1 9918737 9919056 -187276376 + RLTR16 LTR ERVK 70 447 -58 9 660 399 262 34 3 chr1 9919265 9919377 -187276055 - L1MB4 LINE L1 -142 6038 5925 9 660 1363 114 16 0 chr1 9919395 9919579 -187275853 - B2_Mm2 SINE B2 -6 189 3 9 660 282 178 26 40 chr1 9919608 9919684 -187275748 - L1MB4 LINE L1 -412 5768 5694 9 660 804 170 0 7 chr1 9919684 9919812 -187275620 - ORR1D1 LTR MaLR 0 374 248 9 660 698 163 41 0 chr1 9919812 9919935 -187275497 + B3 SINE B2 3 130 -86 9 660 27 73 0 0 chr1 9919958 9920013 -187275419 + AT_rich Low_complexity Low_complexity 1 55 0 9 660 1331 14 0 14 chr1 9920051 9920198 -187275234 - B1_Mus1 SINE Alu -2 146 2 9 660 377 271 81 34 chr1 9920294 9920443 -187274989 + L1M5 LINE L1 5455 5610 -554 9 660 242 216 162 0 chr1 9920506 9920580 -187274852 + MTEb LTR MaLR 52 137 -242 9 660 1211 54 0 20 chr1 9920606 9920757 -187274675 + B1_Mus1 SINE Alu 1 148 0 9 660 230 73 0 24 chr1 9920757 9920799 -187274633 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 9 660 744 158 33 0 chr1 9921083 9921203 -187274229 + ID_B1 SINE B4 101 224 0 9 660 374 295 92 8 chr1 9921292 9921422 -187274010 - B1F SINE Alu -7 142 2 9 660 216 0 0 0 chr1 9921608 9921632 -187273800 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 660 606 257 145 34 chr1 9921637 9921871 -187273561 - B4A SINE B4 -30 262 3 9 660 191 136 45 0 chr1 9922309 9922353 -187273079 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 9 660 502 291 62 56 chr1 9922390 9922550 -187272882 - RSINE1 SINE B4 -2 163 3 9 660 495 275 6 96 chr1 9922636 9922738 -187272694 - ID_B1 SINE B4 0 224 135 9 660 1249 138 16 0 chr1 9922738 9922753 -187272679 - B2_Mm2 SINE B2 -1 194 180 9 660 1202 47 0 39 chr1 9922753 9922907 -187272525 - B1_Mus1 SINE Alu 0 148 1 9 660 1249 138 16 0 chr1 9922907 9923080 -187272352 - B2_Mm2 SINE B2 -16 179 4 9 660 495 275 6 96 chr1 9923080 9923134 -187272298 - ID_B1 SINE B4 -90 134 82 9 660 761 173 8 8 chr1 9923570 9923698 -187271734 + B1_Mur3 SINE Alu 21 148 -1 9 660 22 56 0 0 chr1 9923962 9923998 -187271434 + AT_rich Low_complexity Low_complexity 1 36 0 9 660 1638 49 0 0 chr1 9924273 9924457 -187270975 + B2_Mm1t SINE B2 2 185 -8 9 660 1232 22 0 0 chr1 9925195 9925330 -187270102 + B1_Mus2 SINE Alu 2 136 -11 9 660 233 29 0 29 chr1 9925331 9925366 -187270066 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 660 1388 92 6 0 chr1 9925599 9925773 -187269659 + B2_Mm1t SINE B2 2 176 -17 9 660 317 138 0 65 chr1 9925827 9925889 -187269543 + B2_Mm2 SINE B2 47 104 -91 9 660 30 45 0 0 chr1 9925900 9925944 -187269488 + AT_rich Low_complexity Low_complexity 1 44 0 9 660 728 232 65 0 chr1 9926093 9926231 -187269201 + B1_Mur2 SINE Alu 3 149 0 9 660 284 303 168 19 chr1 9926355 9926510 -187268922 + L3 LINE CR1 4100 4277 -212 9 660 189 0 0 0 chr1 9926530 9926551 -187268881 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 660 377 288 29 9 chr1 9927306 9927411 -187268021 - PB1D10 SINE Alu -3 114 8 9 660 252 196 59 0 chr1 9927544 9927595 -187267837 - B3 SINE B2 -156 60 7 9 660 224 312 31 8 chr1 9927915 9928044 -187267388 + GA-rich Low_complexity Low_complexity 1 132 0 9 660 1198 68 7 0 chr1 9928113 9928260 -187267172 + B1_Mus1 SINE Alu 1 148 0 9 660 187 103 0 49 chr1 9928366 9928407 -187267025 + (TA)n Simple_repeat Simple_repeat 2 40 0 9 660 1346 75 21 21 chr1 9928533 9928724 -187266708 - B2_Mm1a SINE B2 -1 192 2 9 660 3295 84 41 5 chr1 9928731 9929171 -187266261 - Lx3A LINE L1 -6 6975 6520 9 660 1025 102 139 0 chr1 9929214 9929380 -187266052 + B2_Mm2 SINE B2 2 190 -5 9 660 207 267 345 10 chr1 9929628 9930040 -187265392 - L2 LINE L2 -1053 2366 1817 9 660 2825 76 27 5 chr1 9930646 9931015 -187264417 + L1Md_F2 LINE L1 6203 6579 -3 9 660 210 228 228 0 chr1 9931763 9931820 -187263612 - ID SINE ID -153 71 2 9 660 31 44 0 0 chr1 9932116 9932161 -187263271 + AT_rich Low_complexity Low_complexity 1 45 0 9 660 984 202 159 14 chr1 9932861 9933137 -187262295 + MTC LTR MaLR 1 316 -105 9 660 183 100 0 0 chr1 9933674 9933704 -187261728 + (A)n Simple_repeat Simple_repeat 1 30 0 9 660 902 197 43 48 chr1 9934521 9934729 -187260703 - B3 SINE B2 -8 208 2 9 660 1101 70 0 40 chr1 9934828 9934976 -187260456 + B1_Mus2 SINE Alu 2 143 -4 9 660 251 73 49 0 chr1 9934982 9935023 -187260409 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 1 660 1498 82 0 15 chr1 9935089 9935286 -187260146 + B2_Mm2 SINE B2 2 195 0 1 660 1109 206 104 60 chr1 9935301 9935570 -187259862 - MTC LTR MaLR -7 414 134 1 660 603 93 0 45 chr1 9935555 9935667 -187259765 - RMER6A LTR ERVK -248 508 402 1 660 708 168 69 0 chr1 9935662 9935793 -187259639 - MTC LTR MaLR -279 142 3 1 660 4094 152 65 22 chr1 9935862 9936587 -187258845 + RMER6A LTR ERVK 1 756 0 1 660 352 356 7 22 chr1 9936603 9936738 -187258694 - RSINE1 SINE B4 -29 136 4 1 660 269 122 377 40 chr1 9936876 9936982 -187258450 - B2_Mm2 SINE B2 -7 188 47 1 660 1348 102 11 0 chr1 9937029 9937205 -187258227 - B2_Mm1t SINE B2 -14 179 2 1 660 238 228 17 34 chr1 9937266 9937300 -187258132 + RSINE1 SINE B4 2 34 -131 1 660 1816 229 46 10 chr1 9937300 9937689 -187257743 + MTD LTR MaLR 3 405 -14 1 660 348 197 28 14 chr1 9938041 9938113 -187257319 + B4A SINE B4 165 237 -55 1 660 348 24 0 0 chr1 9938204 9938245 -187257187 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 660 885 72 0 0 chr1 9938830 9938941 -187256491 + B2_Mm2 SINE B2 2 112 -83 1 660 506 172 194 8 chr1 9939013 9939142 -187256290 + RLTR47_MM LTR ERV1 380 532 0 1 660 2075 74 132 12 chr1 9939142 9939484 -187255948 - RLTR47_MM LTR ERV1 -149 383 1 1 660 2452 112 66 15 chr1 9939486 9939893 -187255539 + Lx3C LINE L1 6353 6780 -196 1 660 274 245 162 0 chr1 9939990 9940092 -187255340 + MTEa LTR MaLR 44 157 -222 1 660 705 175 162 0 chr1 9940229 9940383 -187255049 + B2_Mm2 SINE B2 1 179 -16 1 660 701 261 82 53 chr1 9940630 9940873 -187254559 + MTEa LTR MaLR 127 376 -3 1 660 376 213 29 90 chr1 9940910 9941105 -187254327 + L1MD LINE L1 4810 5012 -1134 1 660 1274 147 119 43 chr1 9941140 9941417 -187254015 + RMER5 LTR ERV1 20 317 -217 1 660 1513 43 15 56 chr1 9942089 9942284 -187253148 - B2_Mm2 SINE B2 -7 188 2 1 660 642 195 78 0 chr1 9942284 9942412 -187253020 + B1_Mur2 SINE Alu 7 144 -5 1 660 1088 70 44 6 chr1 9943921 9944079 -187251353 + B2_Mm1t SINE B2 2 165 -28 1 660 337 89 316 9 chr1 9944129 9944243 -187251189 + B2_Mm2 SINE B2 47 195 0 1 660 453 221 10 181 chr1 9944268 9944461 -187250971 + RSINE1 SINE B4 2 161 -4 1 660 1076 113 26 21 chr1 9944812 9945001 -187250431 - RLTR11B LTR ERVK -197 256 67 1 660 1188 74 0 0 chr1 9945024 9945172 -187250260 - B1_Mus1 SINE Alu 0 148 1 1 660 400 91 30 0 chr1 9945172 9945238 -187250194 - RLTR11B LTR ERVK -375 78 11 1 660 912 145 118 10 chr1 9945240 9945435 -187249997 + RLTR18 LTR ERVK 139 354 -262 1 660 333 285 41 169 chr1 9945420 9945593 -187249839 + RMER5 LTR ERV1 268 415 -119 1 660 1121 49 21 0 chr1 9945593 9945736 -187249696 + B1_Mm SINE Alu 2 147 0 1 660 333 285 41 169 chr1 9945736 9945828 -187249604 + RMER5 LTR ERV1 416 499 -35 1 660 206 174 0 21 chr1 9945876 9945923 -187249509 + CT-rich Low_complexity Low_complexity 1 46 0 1 660 21 0 0 0 chr1 9946367 9946388 -187249044 + AT_rich Low_complexity Low_complexity 1 21 0 1 660 1157 231 0 0 chr1 9946388 9946604 -187248828 - B3 SINE B2 0 216 1 1 660 308 252 37 55 chr1 9946702 9946811 -187248621 - B4A SINE B4 -141 151 45 1 660 627 229 18 1 chr1 9946921 9947066 -187248366 - B1_Mm SINE Alu -1 148 1 1 660 646 145 18 9 chr1 9947807 9947918 -187247514 - B1_Mus1 SINE Alu -36 112 1 1 660 1191 29 0 0 chr1 9948667 9948805 -187246627 + B1_Mus1 SINE Alu 2 139 -9 1 660 225 0 0 0 chr1 9948805 9948830 -187246602 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 1 660 753 212 0 40 chr1 9949504 9949656 -187245776 - B1_Mur2 SINE Alu 0 149 4 1 660 383 288 90 24 chr1 9949920 9950087 -187245345 + ORR1E LTR MaLR 1 178 -181 1 660 501 198 27 0 chr1 9952303 9952414 -187243018 - RSINE1 SINE B4 -37 128 15 1 660 810 155 27 27 chr1 9953000 9953146 -187242286 - B1_Mur1 SINE Alu 0 149 4 1 660 22 0 0 0 chr1 9953913 9953935 -187241497 + AT_rich Low_complexity Low_complexity 1 22 0 1 660 1210 54 0 0 chr1 9955284 9955432 -187240000 - B1_Mus1 SINE Alu 0 148 1 1 660 23 0 0 0 chr1 9956115 9956138 -187239294 + AT_rich Low_complexity Low_complexity 1 23 0 1 660 22 0 0 0 chr1 9956753 9956775 -187238657 + AT_rich Low_complexity Low_complexity 1 22 0 1 660 27 0 0 0 chr1 9957496 9957523 -187237909 + GC_rich Low_complexity Low_complexity 1 27 0 1 660 288 0 0 0 chr1 9957720 9957752 -187237680 + (CCCG)n Simple_repeat Simple_repeat 1 32 0 1 660 1091 91 12 18 chr1 9959386 9959553 -187235879 + B2_Mm2 SINE B2 4 169 -26 1 660 180 0 0 0 chr1 9959820 9959840 -187235592 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 660 1202 61 0 0 chr1 9959844 9959991 -187235441 - B1_Mus2 SINE Alu 0 147 1 1 660 24 0 0 0 chr1 9960019 9960043 -187235389 + AT_rich Low_complexity Low_complexity 1 24 0 1 660 862 147 15 0 chr1 9960202 9960338 -187235094 + B1_Mur2 SINE Alu 1 138 -11 1 660 240 35 0 0 chr1 9960338 9960367 -187235065 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 660 647 286 121 80 chr1 9960372 9960983 -187234449 - L1ME1 LINE L1 -36 6143 5508 1 660 242 271 0 54 chr1 9961062 9961136 -187234296 - B4A SINE B4 0 292 223 1 660 606 236 74 74 chr1 9961192 9961407 -187234025 - B4A SINE B4 -72 220 6 1 661 878 50 158 0 chr1 9961792 9961912 -187233520 + B1_Mus2 SINE Alu 1 139 -8 1 661 315 0 0 0 chr1 9961912 9961947 -187233485 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 661 655 226 11 63 chr1 9962375 9962550 -187232882 - B2_Mm2 SINE B2 -26 169 4 1 661 205 174 29 0 chr1 9963568 9963637 -187231795 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 661 859 156 210 17 chr1 9963791 9963967 -187231465 - B3 SINE B2 -6 210 1 1 661 185 83 28 0 chr1 9964842 9964878 -187230554 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 1 661 266 50 0 24 chr1 9965067 9965108 -187230324 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 1 661 272 211 18 0 chr1 9965442 9965499 -187229933 + ID4_ SINE ID 19 76 -7 1 661 939 86 0 0 chr1 9966415 9966567 -187228865 + (TG)n Simple_repeat Simple_repeat 2 153 0 1 661 1177 68 7 0 chr1 9967310 9967457 -187227975 - B1_Mus1 SINE Alu 0 148 1 1 661 428 268 38 38 chr1 9968316 9968448 -187226984 - B1F SINE Alu -1 148 17 1 661 351 0 0 0 chr1 9969057 9969096 -187226336 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 661 3168 209 97 50 chr1 9969107 9969963 -187225469 + Lx7 LINE L1 6521 7416 -280 1 661 259 232 29 48 chr1 9969992 9970096 -187225336 + Lx6 LINE L1 7316 7417 -43 1 661 21 0 0 0 chr1 9970104 9970125 -187225307 + AT_rich Low_complexity Low_complexity 1 21 0 1 661 1368 96 0 16 chr1 9970127 9970317 -187225115 + B2_Mm2 SINE B2 1 187 -8 1 661 1305 78 0 0 chr1 9970379 9970558 -187224874 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 661 837 175 7 0 chr1 9970942 9971079 -187224353 + B1_Mus2 SINE Alu 1 138 -9 1 661 328 200 0 20 chr1 9971079 9971181 -187224251 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 661 1531 32 16 26 chr1 9971493 9971686 -187223746 + B2_Mm2 SINE B2 2 192 -3 1 661 180 0 0 0 chr1 9972326 9972346 -187223086 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 661 958 32 8 0 chr1 9972765 9972888 -187222544 - B1_Mus2 SINE Alu 0 147 24 1 661 481 211 122 0 chr1 9973063 9973186 -187222246 - B1_Mur2 SINE Alu 0 149 12 1 661 3567 20 2 0 chr1 9973697 9974092 -187221340 + MTA_Mm LTR MaLR 1 396 0 1 661 2993 74 62 47 chr1 9974435 9974903 -187220529 - IAPLTR2_Mm LTR ERVK 0 475 1 1 661 1594 32 11 5 chr1 9974938 9975129 -187220303 + B2_Mm1a SINE B2 1 192 -1 1 661 299 78 398 45 chr1 9975185 9975293 -187220139 - B2_Mm2 SINE B2 -3 192 47 1 661 1204 119 11 0 chr1 9975340 9975516 -187219916 - B2_Mm1t SINE B2 -14 179 2 1 661 1310 180 30 4 chr1 9976138 9976400 -187219032 + RMER15 LTR ERVL 209 477 -98 1 661 228 173 0 19 chr1 9976618 9976671 -187218761 + T-rich Low_complexity Low_complexity 2 53 0 1 661 763 218 13 20 chr1 9976674 9976824 -187218608 - B1_Mur1 SINE Alu 0 149 1 1 661 1236 84 5 48 chr1 9977127 9977289 -187218143 + B2_Mm1t SINE B2 2 160 -33 1 661 243 0 0 0 chr1 9977289 9977316 -187218116 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 661 1236 84 5 48 chr1 9977316 9977341 -187218091 + B2_Mm1t SINE B2 161 181 -12 1 661 818 98 0 39 chr1 9977481 9977608 -187217824 + B1_Mur4 SINE Alu 29 150 0 1 661 757 173 21 21 chr1 9977710 9977852 -187217580 + B1_Mur3 SINE Alu 2 143 -6 1 661 384 77 0 0 chr1 9978037 9978089 -187217343 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 661 645 199 65 14 chr1 9978089 9978227 -187217205 - B1_Mus1 SINE Alu -3 145 1 1 661 429 109 0 0 chr1 9979508 9979572 -187215860 + (T)n Simple_repeat Simple_repeat 1 64 0 1 661 237 65 0 0 chr1 9979662 9979693 -187215739 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 661 1208 36 0 0 chr1 9979696 9979836 -187215596 - B1_Mm SINE Alu -6 141 2 1 661 236 307 40 88 chr1 9980276 9980401 -187215031 + RSINE1 SINE B4 2 120 -45 1 661 329 43 0 21 chr1 9980407 9980455 -187214977 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 661 1340 101 16 0 chr1 9980499 9980688 -187214744 + B2_Mm1a SINE B2 1 192 -1 1 661 845 149 259 12 chr1 9982925 9983095 -187212337 + B3 SINE B2 5 216 0 1 661 241 250 0 14 chr1 9983908 9983977 -187211455 - L1M2 LINE L1 -4633 2216 2149 1 661 626 143 8 0 chr1 9984459 9984592 -187210840 + CT-rich Low_complexity Low_complexity 1 134 0 1 661 463 256 15 26 chr1 9984592 9984723 -187210709 - B1F2 SINE Alu -21 128 1 1 661 359 318 9 26 chr1 9984625 9984738 -187210694 - ID_B1 SINE B4 -48 176 66 1 661 2777 71 143 139 chr1 9985517 9986027 -187209405 - RLTR1B LTR ERV1 0 512 1 1 661 1548 27 49 0 chr1 9986336 9986519 -187208913 + B2_Mm1a SINE B2 1 192 -1 1 661 1207 41 0 20 chr1 9986834 9986984 -187208448 - B1_Mus2 SINE Alu 0 147 1 1 661 318 71 0 0 chr1 9987600 9987642 -187207790 + B1_Mus2 SINE Alu 93 134 -13 1 661 324 0 0 0 chr1 9987642 9987678 -187207754 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 661 339 252 52 9 chr1 9988408 9988524 -187206908 + B1F SINE Alu 21 141 -8 1 661 281 220 79 70 chr1 9988524 9988548 -187206884 + ID_B1 SINE B4 126 243 -49 1 661 413 273 29 7 chr1 9989696 9989836 -187205596 + B4 SINE B4 2 144 -148 1 661 649 230 43 0 chr1 9990625 9990764 -187204668 + B1_Mur1 SINE Alu 5 149 0 1 661 520 149 112 0 chr1 9990910 9991017 -187204415 + B1_Mur2 SINE Alu 31 149 0 1 661 1386 76 16 0 chr1 9991360 9991544 -187203888 + B2_Mm1a SINE B2 1 187 -6 1 661 556 242 121 0 chr1 9991556 9991721 -187203711 - B3 SINE B2 0 216 32 1 661 239 105 0 0 chr1 9991745 9991783 -187203649 + B1_Mur4 SINE Alu 104 141 -9 1 661 3511 124 7 23 chr1 9991783 9992346 -187203086 + Lx4A LINE L1 6500 7053 -5 1 661 23 0 0 0 chr1 9992346 9992369 -187203063 + AT_rich Low_complexity Low_complexity 1 23 0 1 661 590 114 276 0 chr1 9992569 9992674 -187202758 + B1_Mus2 SINE Alu 1 134 -13 1 661 243 0 0 0 chr1 9992850 9992877 -187202555 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 661 365 267 22 0 chr1 9992877 9992967 -187202465 - PB1D10 SINE Alu -9 108 17 1 661 281 291 129 7 chr1 9993666 9993681 -187201751 + B4 SINE B4 85 154 -138 1 661 442 118 76 143 chr1 9993681 9993800 -187201632 + PB1D9 SINE Alu 9 119 -1 1 661 281 291 129 7 chr1 9993800 9993817 -187201615 + B4 SINE B4 155 247 -45 1 661 243 244 90 34 chr1 9994025 9994114 -187201318 - PB1D7 SINE Alu -1 119 26 1 661 283 284 14 0 chr1 9994210 9994284 -187201148 - ID4 SINE ID 0 83 9 1 661 459 35 0 0 chr1 9994726 9994783 -187200649 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 661 257 331 43 80 chr1 9994958 9995234 -187200198 + Lx8 LINE L1 7197 7462 -11 1 661 376 234 43 43 chr1 9995309 9995425 -187200007 + PB1 SINE Alu 12 127 0 1 661 511 292 47 6 chr1 9995480 9995652 -187199780 - RMER30 DNA MER1_type -14 188 10 1 661 22 0 0 0 chr1 9996253 9996275 -187199157 + AT_rich Low_complexity Low_complexity 1 22 0 1 661 1213 55 7 0 chr1 9996278 9996424 -187199008 - B1_Mus2 SINE Alu 0 147 1 1 661 360 324 88 0 chr1 9996563 9996699 -187198733 + B1F SINE Alu 1 148 -1 1 661 394 267 17 33 chr1 9996582 9996702 -187198730 + ID_B1 SINE B4 107 224 0 1 661 462 91 0 0 chr1 9996709 9996786 -187198646 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 1 661 414 0 0 0 chr1 9996786 9996832 -187198600 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 661 247 218 165 7 chr1 9996832 9996919 -187198513 + ID4_ SINE ID 12 107 -45 1 661 485 167 86 16 chr1 9997412 9997540 -187197892 - B2_Mm2 SINE B2 0 195 59 1 661 430 221 47 18 chr1 9997846 9997993 -187197439 - MER34 LTR ERV1 -395 176 20 1 661 1216 35 0 7 chr1 9998001 9998146 -187197286 - B1_Mm SINE Alu -2 145 2 1 661 367 268 118 0 chr1 9998225 9998352 -187197080 + ID_B1 SINE B4 82 223 -1 1 661 469 171 189 31 chr1 9999676 9999803 -187195629 - B1_Mur4 SINE Alu 0 150 4 1 661 647 154 29 0 chr1 9999894 9999998 -187195434 - U6 snRNA snRNA 0 107 1 1 661 189 74 0 0 chr1 10000146 10000173 -187195259 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 661 347 292 16 74 chr1 10000329 10000451 -187194981 + B4 SINE B4 68 182 -110 2 661 474 241 0 61 chr1 10000362 10000477 -187194955 + PB1D9 SINE Alu 13 120 0 3 661 258 333 62 70 chr1 10000972 10001101 -187194331 - B1F SINE Alu -1 148 21 4 661 550 261 124 0 chr1 10001407 10001568 -187193864 - B3A SINE B2 -16 182 2 5 661 782 265 113 0 chr1 10001568 10001772 -187193660 - B4A SINE B4 -60 232 6 6 661 582 323 81 83 chr1 10002357 10002792 -187192640 + MLT1F2 LTR MaLR 3 436 -124 7 661 195 42 0 0 chr1 10003247 10003271 -187192161 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 661 962 122 0 0 chr1 10003589 10003737 -187191695 - B1_Mur4 SINE Alu -1 149 2 9 661 249 320 39 47 chr1 10004559 10004687 -187190745 - L2c LINE L2 -6 3381 3255 1 661 303 258 32 0 chr1 10005075 10005137 -187190295 - ID4 SINE ID -2 81 18 1 661 28 0 0 0 chr1 10005478 10005506 -187189926 + AT_rich Low_complexity Low_complexity 1 28 0 1 661 705 286 212 32 chr1 10005687 10006282 -187189150 - RMER1C Other Other -24 1318 617 1 661 386 268 149 144 chr1 10006602 10006718 -187188714 - ID_B1 SINE B4 -21 203 71 1 661 1234 21 7 0 chr1 10006718 10006863 -187188569 + B1_Mm SINE Alu 2 147 0 1 661 386 268 149 144 chr1 10006863 10006947 -187188485 - ID SINE ID -154 70 2 1 661 245 281 109 0 chr1 10006990 10007054 -187188378 - ID_B1 SINE B4 -40 184 114 1 661 774 106 15 8 chr1 10007843 10007976 -187187456 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 1 661 693 154 122 0 chr1 10007979 10008102 -187187330 - B1_Mur4 SINE Alu -10 140 3 1 661 258 180 33 0 chr1 10009656 10009717 -187185715 + A-rich Low_complexity Low_complexity 4 66 0 1 661 1317 75 10 36 chr1 10009724 10009918 -187185514 + B2_Mm2 SINE B2 5 193 -2 2 661 257 267 108 10 chr1 10009939 10010041 -187185391 + PB1D10 SINE Alu 5 116 -1 2 661 186 43 0 0 chr1 10010080 10010103 -187185329 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 661 239 401 54 13 chr1 10010805 10010954 -187184478 - RSINE1 SINE B4 -6 159 5 2 661 2118 116 43 6 chr1 10011090 10011436 -187183996 - RLTR15 LTR ERVK 0 359 1 2 661 712 217 14 0 chr1 10011473 10011616 -187183816 + B1_Mus2 SINE Alu 1 145 -2 2 661 427 30 0 83 chr1 10011962 10012034 -187183398 - L1Md_F2 LINE L1 -3 6579 6514 2 661 630 219 119 36 chr1 10012114 10012308 -187183124 + ORR1D1 LTR MaLR 1 210 -168 2 661 5770 181 89 37 chr1 10012340 10013674 -187181758 + Lx6 LINE L1 6038 7441 -19 2 661 368 203 118 0 chr1 10013717 10013825 -187181607 + ORR1D1 LTR MaLR 245 366 -8 2 661 323 267 140 19 chr1 10013826 10013933 -187181499 - RSINE1 SINE B4 -42 123 4 2 661 440 258 97 0 chr1 10014577 10014701 -187180731 + B1F1 SINE Alu 3 138 -11 3 661 456 225 187 7 chr1 10015509 10015648 -187179784 + RSINE1 SINE B4 2 165 0 3 661 23 0 0 0 chr1 10015925 10015948 -187179484 + AT_rich Low_complexity Low_complexity 1 23 0 3 661 252 0 0 0 chr1 10017546 10017574 -187177858 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 661 834 179 27 7 chr1 10017574 10017713 -187177719 - B1_Mur1 SINE Alu -6 143 1 3 661 766 174 14 20 chr1 10018610 10018757 -187176675 - B1_Mur4 SINE Alu 0 150 5 3 661 344 254 45 0 chr1 10018811 10018878 -187176554 - RSINE1 SINE B4 -2 163 94 3 661 269 263 12 95 chr1 10018947 10019031 -187176401 + B1F1 SINE Alu 62 138 -11 3 661 448 293 32 39 chr1 10019297 10019453 -187175979 - ID_B1 SINE B4 0 224 70 3 661 338 299 124 0 chr1 10019646 10019743 -187175689 + ID_B1 SINE B4 67 175 -49 3 661 689 168 132 13 chr1 10020048 10020199 -187175233 - URR1A DNA MER1_type -13 213 45 4 661 600 234 40 0 chr1 10020483 10020607 -187174825 + RSINE1 SINE B4 3 131 -34 4 661 1138 88 0 0 chr1 10020988 10021135 -187174297 - B1_Mus1 SINE Alu 0 148 2 4 661 210 292 215 0 chr1 10021135 10021200 -187174232 + RSINE1 SINE B4 85 163 -2 4 661 218 200 200 0 chr1 10021522 10021592 -187173840 + PB1D10 SINE Alu 32 115 -2 4 661 613 177 115 0 chr1 10021604 10021734 -187173698 + B1_Mur3 SINE Alu 5 149 0 4 661 220 304 42 42 chr1 10021752 10021824 -187173608 + ID4_ SINE ID 7 78 -5 4 661 180 0 0 0 chr1 10021828 10021848 -187173584 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 661 1395 210 49 41 chr1 10021930 10022297 -187173135 + ORR1D1 LTR MaLR 1 370 -4 4 661 256 335 121 24 chr1 10023050 10023215 -187172217 + B4 SINE B4 89 269 -23 4 661 267 273 25 25 chr1 10024696 10024775 -187170657 - ID SINE ID -143 81 3 5 661 24 32 0 0 chr1 10025591 10025622 -187169810 + AT_rich Low_complexity Low_complexity 1 31 0 5 661 375 176 246 25 chr1 10025703 10025825 -187169607 - B1_Mur3 SINE Alu 0 149 1 5 661 612 288 78 69 chr1 10025827 10026058 -187169374 - B4A SINE B4 -46 246 14 5 661 259 303 131 27 chr1 10026840 10027023 -187168409 + MIRb SINE MIR 51 252 -16 5 661 21 0 0 0 chr1 10027342 10027363 -187168069 + AT_rich Low_complexity Low_complexity 1 21 0 5 661 25 31 0 0 chr1 10028823 10028855 -187166577 + AT_rich Low_complexity Low_complexity 1 32 0 5 661 467 137 168 0 chr1 10029130 10029225 -187166207 - B1_Mur4 SINE Alu -39 111 1 5 661 273 308 8 84 chr1 10029246 10029377 -187166055 + ID_B1 SINE B4 30 150 -74 5 661 21 89 0 0 chr1 10029766 10029822 -187165610 + GC_rich Low_complexity Low_complexity 1 56 0 5 661 243 218 0 0 chr1 10030533 10030588 -187164844 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 6 661 706 159 9 0 chr1 10030868 10030975 -187164457 + PB1D9 SINE Alu 1 108 -12 6 661 183 42 0 0 chr1 10031107 10031131 -187164301 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 6 661 527 332 80 70 chr1 10031521 10031835 -187163597 + MER90a LTR ERV1 294 610 -4 6 661 418 281 9 37 chr1 10032497 10032604 -187162828 + B1_Mur2 SINE Alu 2 105 -44 6 661 491 82 14 0 chr1 10032612 10032685 -187162747 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 6 661 1348 89 21 0 chr1 10032687 10032878 -187162554 - B2_Mm2 SINE B2 0 195 1 6 661 1691 240 78 26 chr1 10032982 10033556 -187161876 - Lx8 LINE L1 -377 7096 6493 6 661 624 325 29 0 chr1 10033631 10033877 -187161555 + Lx8 LINE L1 6234 6486 -987 6 661 414 282 26 84 chr1 10034242 10034397 -187161035 - B1_Mur2 SINE Alu -2 147 2 6 661 231 347 54 69 chr1 10034286 10034416 -187161016 - B4 SINE B4 -95 197 70 7 661 23 33 0 0 chr1 10034587 10034617 -187160815 + AT_rich Low_complexity Low_complexity 1 30 0 7 661 413 198 12 58 chr1 10034636 10034722 -187160710 - B1_Mm SINE Alu -56 91 10 7 661 707 216 7 54 chr1 10035310 10035457 -187159975 + B1_Mur1 SINE Alu 10 149 0 7 661 252 253 66 44 chr1 10035900 10035991 -187159441 - L2b LINE L2 -22 3353 3261 7 661 899 299 14 20 chr1 10036856 10037150 -187158282 - B4A SINE B4 0 292 1 7 661 500 192 20 3 chr1 10037918 10038019 -187157413 + RSINE1 SINE B4 1 112 -180 7 661 982 233 75 29 chr1 10038115 10038393 -187157039 - B4 SINE B4 0 292 2 7 661 735 219 135 26 chr1 10038935 10039127 -187156305 + B3 SINE B2 1 213 -3 7 661 24 67 0 0 chr1 10039128 10039173 -187156259 + AT_rich Low_complexity Low_complexity 1 45 0 7 661 1198 48 0 33 chr1 10039209 10039360 -187156072 + B1_Mm SINE Alu 2 147 0 8 661 3171 33 101 0 chr1 10039423 10039631 -187155801 + RLTR10C LTR ERVK 1 220 -216 8 661 387 0 0 0 chr1 10039631 10039674 -187155758 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 661 3171 33 101 0 chr1 10039674 10039861 -187155571 + RLTR10C LTR ERVK 221 434 -2 8 661 182 375 68 32 chr1 10040417 10040607 -187154825 + L2 LINE L2 2563 2759 -660 8 661 1731 197 64 81 chr1 10040939 10041216 -187154216 - MTC LTR MaLR -8 413 130 8 661 818 145 256 0 chr1 10041216 10041388 -187154044 + B3 SINE B2 1 216 0 8 661 1731 197 64 81 chr1 10041388 10041530 -187153902 - MTC LTR MaLR -292 129 1 8 661 500 277 50 55 chr1 10041591 10041809 -187153623 + B4 SINE B4 1 217 -75 8 661 660 147 0 0 chr1 10042272 10042408 -187153024 + (CA)n Simple_repeat Simple_repeat 2 137 0 8 661 630 0 0 0 chr1 10042461 10042531 -187152901 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 8 661 306 194 0 0 chr1 10042773 10042835 -187152597 + T-rich Low_complexity Low_complexity 1 62 0 8 661 330 275 104 18 chr1 10042837 10043002 -187152430 + L1MD LINE L1 4223 4401 -1745 9 661 276 309 24 12 chr1 10043182 10043264 -187152168 - ID_B1 SINE B4 -53 171 89 9 661 226 213 40 69 chr1 10043288 10043389 -187152043 + Tigger6a DNA MER2_type 812 909 -174 9 661 328 303 0 43 chr1 10043375 10043468 -187151964 - B1F SINE Alu 0 149 61 9 661 1601 180 112 12 chr1 10043464 10043800 -187151632 + RMER4A LTR ERVK 42 411 -55 9 661 219 276 52 0 chr1 10043800 10043858 -187151574 + PB1D9 SINE Alu 1 61 -59 9 661 342 217 198 50 chr1 10043858 10043877 -187151555 + B4A SINE B4 82 220 -72 9 661 635 119 20 10 chr1 10043877 10043979 -187151453 + PB1D9 SINE Alu 11 113 -7 9 661 273 57 0 0 chr1 10043982 10044017 -187151415 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 661 303 152 0 43 chr1 10044017 10044086 -187151346 + RMER4A LTR ERVK 398 463 -3 9 661 1707 246 63 15 chr1 10044274 10044752 -187150680 - RLTR11A2 LTR ERVK -8 519 19 9 661 385 292 10 20 chr1 10044779 10044877 -187150555 - ID_B1 SINE B4 -123 101 5 9 661 24 53 0 0 chr1 10045037 10045075 -187150357 + AT_rich Low_complexity Low_complexity 1 38 0 1 661 335 247 97 0 chr1 10045225 10045318 -187150114 - RSINE1 SINE B4 -61 104 3 1 661 235 296 66 16 chr1 10045513 10045757 -187149675 - L1M2 LINE L1 -765 5378 5123 1 661 2212 129 20 97 chr1 10045827 10046281 -187149151 - RMER6A LTR ERVK -337 419 1 1 661 319 271 102 9 chr1 10047160 10047268 -187148164 - RSINE1 SINE B4 -2 163 46 1 661 491 271 21 21 chr1 10047387 10047530 -187147902 - B1_Mur1 SINE Alu -6 143 1 1 661 257 293 26 26 chr1 10047637 10047714 -187147718 - ID4 SINE ID -2 81 5 1 661 324 305 58 17 chr1 10047721 10047841 -187147591 - B1F SINE Alu -8 141 17 1 661 601 266 118 0 chr1 10048256 10048425 -187147007 + ID_B1 SINE B4 2 190 -34 1 661 294 276 33 54 chr1 10048343 10048435 -187146997 + PB1D10 SINE Alu 25 114 -3 1 661 189 0 0 0 chr1 10049322 10049343 -187146089 + (T)n Simple_repeat Simple_repeat 1 21 0 1 661 270 288 101 31 chr1 10049489 10049618 -187145814 - ORR1E LTR MaLR -221 138 1 1 661 289 288 12 0 chr1 10051207 10051287 -187144145 + ID4 SINE ID 2 82 -1 1 661 652 229 35 7 chr1 10051723 10051864 -187143568 + ID_B1 SINE B4 80 224 0 1 661 410 292 17 26 chr1 10052276 10052392 -187143040 + PB1D7 SINE Alu 3 117 -3 1 661 497 123 278 19 chr1 10052398 10052506 -187142926 + B1_Mus2 SINE Alu 9 144 -3 1 661 180 0 0 0 chr1 10052596 10052616 -187142816 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 1 661 188 196 42 42 chr1 10053573 10053621 -187141811 - MIRm SINE MIR -125 151 104 1 661 245 299 134 0 chr1 10053697 10053794 -187141638 - MIRc SINE MIR -63 205 96 1 661 412 146 7 13 chr1 10054086 10054173 -187141259 + B1_Mus2 SINE Alu 60 149 0 1 661 1088 82 134 6 chr1 10055617 10055788 -187139644 - B2_Mm1t SINE B2 0 193 1 1 661 546 253 123 11 chr1 10055888 10056172 -187139260 - Lx9 LINE L1 -1 7643 7328 1 661 291 271 94 0 chr1 10056172 10056257 -187139175 - B1_Mur2 SINE Alu -56 93 1 1 661 21 57 0 0 chr1 10057762 10057797 -187137635 + AT_rich Low_complexity Low_complexity 1 35 0 1 661 377 97 32 0 chr1 10059391 10059453 -187135979 + (TATG)n Simple_repeat Simple_repeat 3 66 0 1 661 576 266 25 97 chr1 10059453 10059649 -187135783 - B3A SINE B2 -16 182 1 1 661 418 279 28 42 chr1 10059997 10060139 -187135293 - B1F SINE Alu -5 144 5 1 661 30 27 0 0 chr1 10060202 10060239 -187135193 + AT_rich Low_complexity Low_complexity 1 37 0 1 661 241 289 270 63 chr1 10060252 10060363 -187135069 - RSINE1 SINE B4 -29 136 3 1 661 685 136 108 31 chr1 10060466 10060595 -187134837 - B1_Mur4 SINE Alu -10 140 2 1 661 388 286 164 8 chr1 10060846 10060980 -187134452 - B3A SINE B2 -15 183 29 1 661 186 103 0 0 chr1 10061022 10061051 -187134381 + (C)n Simple_repeat Simple_repeat 1 29 0 1 661 673 167 19 94 chr1 10061727 10061886 -187133546 - B1_Mus1 SINE Alu 0 148 2 1 661 819 162 68 17 chr1 10062425 10062601 -187132831 - B2_Mm2 SINE B2 -8 187 3 1 661 242 333 0 79 chr1 10062626 10062727 -187132705 - MER68 LTR ERVL 0 563 471 1 661 780 317 46 16 chr1 10062820 10063244 -187132188 - MER68 LTR ERVL -82 481 1 1 661 748 267 6 0 chr1 10064319 10064495 -187130937 + B3A SINE B2 4 180 -18 1 661 264 30 0 0 chr1 10064504 10064537 -187130895 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 661 202 206 64 21 chr1 10064560 10064654 -187130778 + (TTAAA)n Simple_repeat Simple_repeat 3 100 0 1 661 286 250 59 0 chr1 10065231 10065299 -187130133 - ID4_ SINE ID -10 73 2 1 661 478 335 70 6 chr1 10065458 10065614 -187129818 + B3A SINE B2 2 167 -31 1 661 459 231 107 13 chr1 10065883 10066032 -187129400 + RSINE1 SINE B4 3 165 0 1 661 646 255 72 24 chr1 10066077 10066286 -187129146 + ID_B1 SINE B4 6 224 0 1 661 410 270 269 9 chr1 10066814 10067037 -187128395 - B4A SINE B4 -2 290 10 1 661 383 292 21 0 chr1 10067085 10067181 -187128251 - PB1D10 SINE Alu -18 99 2 1 661 405 0 0 0 chr1 10067877 10067922 -187127510 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 661 342 0 0 0 chr1 10067922 10067959 -187127473 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 661 744 238 10 51 chr1 10068027 10068222 -187127210 - ORR1C2 LTR MaLR -197 187 1 1 661 1212 41 0 0 chr1 10068501 10068648 -187126784 + B1_Mm SINE Alu 1 147 0 1 661 261 0 0 0 chr1 10068648 10068677 -187126755 + (A)n Simple_repeat Simple_repeat 1 29 0 1 661 679 219 0 31 chr1 10069280 10069407 -187126025 + B1_Mur2 SINE Alu 1 123 -26 1 661 951 162 118 25 chr1 10069414 10069617 -187125815 + URR1A DNA MER1_type 5 226 0 1 661 212 371 0 14 chr1 10069797 10069868 -187125564 - ID4 SINE ID -8 75 6 1 661 256 338 39 33 chr1 10069956 10069984 -187125448 - MT2B LTR ERVL -279 322 213 1 661 460 293 86 0 chr1 10069984 10070100 -187125332 - B1F1 SINE Alu -9 140 15 1 661 234 0 0 0 chr1 10070225 10070251 -187125181 + (T)n Simple_repeat Simple_repeat 1 26 0 1 661 1231 29 0 0 chr1 10070253 10070393 -187125039 - B1_Mm SINE Alu -7 140 1 1 661 321 298 62 29 chr1 10070959 10071232 -187124200 - L1MCc LINE L1 -6110 313 32 1 661 243 0 0 0 chr1 10071350 10071377 -187124055 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 661 711 52 0 0 chr1 10071377 10071472 -187123960 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 661 1011 226 149 16 chr1 10071615 10071938 -187123494 - ORR1D2 LTR MaLR -4 366 1 1 661 1200 61 0 0 chr1 10072107 10072254 -187123178 - B1_Mus1 SINE Alu 0 148 2 1 661 693 206 37 51 chr1 10072972 10073187 -187122245 - B3 SINE B2 0 216 5 1 661 31 26 0 0 chr1 10073260 10073298 -187122134 + AT_rich Low_complexity Low_complexity 1 38 0 1 661 57 107 0 0 chr1 10075004 10075229 -187120203 + AT_rich Low_complexity Low_complexity 1 225 0 1 661 180 0 0 0 chr1 10075521 10075541 -187119891 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1 661 261 274 106 48 chr1 10075594 10075720 -187119712 + MIR3 SINE MIR 74 207 -1 1 661 709 310 50 0 chr1 10077356 10077556 -187117876 + B4 SINE B4 79 288 -4 1 661 279 327 58 29 chr1 10078673 10078777 -187116655 + B1F SINE Alu 43 149 0 1 661 368 288 154 33 chr1 10079271 10079666 -187115766 - L1MB3 LINE L1 -270 5901 5437 1 661 608 269 125 11 chr1 10079666 10079850 -187115582 - B4 SINE B4 -2 290 86 1 661 372 217 48 0 chr1 10079872 10079955 -187115477 - MTE2b LTR MaLR 0 379 293 1 661 204 40 0 0 chr1 10080400 10080425 -187115007 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1 661 22 0 0 0 chr1 10080605 10080627 -187114805 + AT_rich Low_complexity Low_complexity 1 22 0 1 661 394 275 0 32 chr1 10080682 10080776 -187114656 - RSINE1 SINE B4 -72 93 3 1 661 644 278 45 50 chr1 10081164 10081365 -187114067 - ID_B1 SINE B4 0 224 25 1 661 424 278 151 14 chr1 10081383 10081558 -187113874 - B3A SINE B2 -6 210 22 1 661 342 132 19 0 chr1 10081844 10081897 -187113535 + B3A SINE B2 3 56 -142 1 661 232 203 0 14 chr1 10081898 10081968 -187113464 - L1_Mur3 LINE L1 -2127 3753 3685 1 661 873 216 14 37 chr1 10081987 10082203 -187113229 - ORR1C2 LTR MaLR 0 384 174 1 661 414 125 16 0 chr1 10082203 10082267 -187113165 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 661 607 173 0 51 chr1 10082267 10082444 -187112988 + GA-rich Low_complexity Low_complexity 3 170 0 1 661 306 0 0 0 chr1 10082444 10082478 -187112954 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 661 757 147 147 0 chr1 10082500 10082643 -187112789 - ORR1C2 LTR MaLR -215 169 6 1 661 470 290 68 15 chr1 10082647 10082910 -187112522 - L1_Mur3 LINE L1 -2186 3694 3418 1 661 403 241 42 59 chr1 10082986 10083105 -187112327 - B1_Mur4 SINE Alu -5 145 29 1 661 361 239 42 114 chr1 10083106 10083413 -187112019 - L1_Mur3 LINE L1 -2551 3329 3045 1 661 843 61 43 4 chr1 10083435 10083562 -187111870 - B1_Mm SINE Alu 0 147 21 1 661 2717 235 121 28 chr1 10083579 10084742 -187110690 - L1_Mur3 LINE L1 -2921 2959 1689 1 661 407 287 50 14 chr1 10085083 10085302 -187110130 - L1_Mur3 LINE L1 -6601 1127 901 1 661 310 239 90 0 chr1 10087120 10087254 -187108178 + L1MD2 LINE L1 5801 5946 -413 1 661 1167 122 147 0 chr1 10087405 10087602 -187107830 - URR1A DNA MER1_type 0 226 1 1 661 287 182 0 35 chr1 10087882 10087939 -187107493 - B2_Mm2 SINE B2 -94 101 47 1 661 1262 97 17 0 chr1 10088005 10088180 -187107252 - B2_Mm1t SINE B2 -14 179 2 1 661 353 288 32 0 chr1 10088386 10088511 -187106921 - L1ME2 LINE L1 -338 5826 5698 1 661 780 138 15 0 chr1 10088561 10088691 -187106741 + URR1B DNA MER1_type 94 225 0 1 661 385 309 36 82 chr1 10088704 10088941 -187106491 - L1ME2 LINE L1 -487 5677 5458 1 661 443 286 80 9 chr1 10088945 10089157 -187106275 - L1MD3 LINE L1 -7 7988 7762 1 661 203 164 15 62 chr1 10089166 10089231 -187106201 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 1 661 380 261 24 63 chr1 10089275 10089402 -187106030 - RSINE1 SINE B4 -40 125 4 1 661 298 336 19 0 chr1 10089729 10089836 -187105596 - PB1D10 SINE Alu 0 117 9 1 661 380 213 174 37 chr1 10089995 10090156 -187105276 - L1MC LINE L1 -1631 4515 4333 1 661 533 336 26 86 chr1 10090160 10090463 -187104969 - B4A SINE B4 0 292 8 1 661 396 0 0 0 chr1 10092053 10092097 -187103335 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 661 459 0 0 0 chr1 10092208 10092259 -187103173 + (TCTCTG)n Simple_repeat Simple_repeat 3 53 0 1 661 185 0 40 0 chr1 10092268 10092293 -187103139 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 1 661 540 157 152 32 chr1 10092306 10092431 -187103001 - B1_Mus2 SINE Alu -6 141 2 1 82 350 353 17 97 chr1 10092526 10092764 -187102668 - B4 SINE B4 -73 219 1 2 662 399 127 0 0 chr1 10093047 10093110 -187102322 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 662 324 143 0 0 chr1 10093110 10093166 -187102266 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 2 662 728 181 222 28 chr1 10093178 10093354 -187102078 - B3 SINE B2 -6 210 1 2 662 221 146 122 0 chr1 10093415 10093456 -187101976 - ID SINE ID -165 59 14 2 662 262 296 122 0 chr1 10093485 10093583 -187101849 - MLT1F1 LTR MaLR -11 478 369 2 662 289 388 87 44 chr1 10093640 10093915 -187101517 - MLT1F1 LTR MaLR -275 294 8 2 662 1083 77 0 40 chr1 10095742 10095890 -187099542 + B1_Mus2 SINE Alu 1 142 -5 2 662 342 264 159 75 chr1 10096219 10096420 -187099012 + RMER2 LTR ERV1 350 567 0 2 662 209 300 0 0 chr1 10096428 10096478 -187098954 + (TATG)n Simple_repeat Simple_repeat 1 50 0 2 662 745 170 22 15 chr1 10096590 10096727 -187098705 - B1_Mur1 SINE Alu 0 149 12 2 662 373 206 125 37 chr1 10097367 10097503 -187097929 + B1F SINE Alu 1 148 -1 2 662 216 0 0 0 chr1 10097811 10097835 -187097597 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 662 1209 48 0 0 chr1 10097841 10097988 -187097444 - B1_Mus2 SINE Alu 0 147 1 2 662 346 231 62 25 chr1 10098924 10099004 -187096428 + PB1D10 SINE Alu 1 83 -34 2 662 3180 36 21 3 chr1 10099570 10099959 -187095473 - MTA_Mm LTR MaLR 0 396 1 2 662 369 130 427 29 chr1 10100210 10100313 -187095119 - B1_Mus1 SINE Alu 0 148 5 2 662 31 0 0 0 chr1 10100597 10100628 -187094804 + AT_rich Low_complexity Low_complexity 1 31 0 2 662 1111 234 14 7 chr1 10101195 10101470 -187093962 + Lx9 LINE L1 7218 7494 -150 2 662 536 252 45 8 chr1 10101643 10101775 -187093657 + B1F1 SINE Alu 5 141 -8 2 662 184 54 0 75 chr1 10102584 10102624 -187092808 + (GGA)n Simple_repeat Simple_repeat 2 38 0 2 662 201 147 0 0 chr1 10103628 10103662 -187091770 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 2 662 667 248 21 0 chr1 10104004 10104145 -187091287 - B1_Mur2 SINE Alu -5 144 1 2 662 1122 137 6 0 chr1 10104841 10105009 -187090423 + B2_Mm2 SINE B2 1 169 -26 2 662 3163 117 17 19 chr1 10105151 10105675 -187089757 - RLTR28 LTR ERVL 0 524 2 2 662 249 188 4 7 chr1 10105769 10105822 -187089610 - B2_Mm2 SINE B2 -145 53 2 2 662 181 222 43 22 chr1 10106148 10106194 -187089238 + L4 LINE RTE 1156 1202 -827 2 662 948 18 0 0 chr1 10106568 10106678 -187088754 + (TTCTC)n Simple_repeat Simple_repeat 5 114 0 2 662 501 47 0 0 chr1 10107422 10107486 -187087946 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 662 976 159 45 40 chr1 10108107 10108143 -187087289 - Lx4B LINE L1 -1244 5814 5780 2 662 4463 88 8 2 chr1 10108143 10108754 -187086678 - L1_Mus1 LINE L1 0 6567 5953 2 662 23474 81 36 6 chr1 10108754 10111595 -187083837 - L1VL1 LINE L1 -104 5779 2934 2 662 3278 43 5 5 chr1 10111595 10111991 -187083441 + MTA_Mm LTR MaLR 1 396 0 2 662 15744 74 31 12 chr1 10111991 10114200 -187081232 - L1VL1 LINE L1 -2950 2933 642 2 662 525 179 0 0 chr1 10114203 10114298 -187081134 - L1VL1 LINE L1 -6327 311 217 2 662 1948 199 58 96 chr1 10114325 10114498 -187080934 - RMER5 LTR ERV1 -5 529 344 2 662 1112 75 0 39 chr1 10114498 10114651 -187080781 + B1_Mus1 SINE Alu 2 148 0 2 662 1948 199 58 96 chr1 10114651 10115027 -187080405 - RMER5 LTR ERV1 -191 343 1 2 662 242 29 0 28 chr1 10115209 10115245 -187080187 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 662 617 246 131 20 chr1 10115260 10115459 -187079973 + ID_B1 SINE B4 1 221 -3 2 662 207 304 0 14 chr1 10115469 10115539 -187079893 + G-rich Low_complexity Low_complexity 1 69 0 2 662 1189 62 0 0 chr1 10115917 10116063 -187079369 - B1_Mus2 SINE Alu 0 147 2 2 662 384 234 243 0 chr1 10116143 10116254 -187079178 - ID_B1 SINE B4 -1 223 86 2 662 272 257 143 0 chr1 10116772 10116842 -187078590 - BC1_Mm scRNA scRNA -69 83 4 2 662 455 290 183 29 chr1 10116845 10117228 -187078204 - L1MC1 LINE L1 -60 6273 5832 2 662 320 250 0 0 chr1 10117240 10117304 -187078128 - B1F SINE Alu -5 144 81 2 662 355 298 69 75 chr1 10117734 10117759 -187077673 - B2_Mm1t SINE B2 -11 182 157 2 662 492 62 0 0 chr1 10117759 10117823 -187077609 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 662 606 271 26 26 chr1 10117823 10117978 -187077454 - B3A SINE B2 -41 157 3 2 662 1943 188 59 32 chr1 10117989 10118450 -187076982 - Lx5 LINE L1 -3 7047 6575 2 662 413 19 19 0 chr1 10118589 10118643 -187076789 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2 662 804 147 0 0 chr1 10118760 10118896 -187076536 + (TCCC)n Simple_repeat Simple_repeat 3 138 0 2 662 225 0 0 0 chr1 10118898 10118923 -187076509 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 2 662 198 339 93 51 chr1 10120358 10120476 -187074956 + MIR SINE MIR 110 232 -30 2 662 239 235 66 66 chr1 10120516 10120607 -187074825 + MIR SINE MIR 172 262 0 2 662 417 239 65 0 chr1 10122652 10122744 -187072688 - B1F SINE Alu 0 149 52 2 662 382 217 186 25 chr1 10122659 10122777 -187072655 - ID_B1 SINE B4 -7 217 81 2 662 227 259 130 0 chr1 10122777 10122885 -187072547 + L1M4 LINE L1 5561 5682 -502 2 662 234 291 65 37 chr1 10123713 10123820 -187071612 + L1M2 LINE L1 4878 4987 -1156 2 662 306 123 0 0 chr1 10124877 10124934 -187070498 + (T)n Simple_repeat Simple_repeat 1 57 0 2 662 1228 48 0 0 chr1 10124953 10125100 -187070332 - B1_Mm SINE Alu 0 147 1 2 662 22 0 0 0 chr1 10129216 10129238 -187066194 + AT_rich Low_complexity Low_complexity 1 22 0 2 662 620 195 50 17 chr1 10129459 10129579 -187065853 + MT2A LTR ERVL 33 156 -377 2 662 287 200 0 16 chr1 10129579 10129640 -187065792 + MT2A LTR ERVL 392 451 -82 2 662 254 277 0 0 chr1 10129646 10129711 -187065721 + (CACG)n Simple_repeat Simple_repeat 2 66 0 2 662 229 216 0 0 chr1 10130143 10130194 -187065238 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 662 21 0 0 0 chr1 10131194 10131215 -187064217 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 830 152 21 0 chr1 10131931 10132076 -187063356 + URR1A DNA MER1_type 79 226 0 2 662 243 0 0 0 chr1 10132472 10132499 -187062933 + (AGGGGG)n Simple_repeat Simple_repeat 2 28 0 2 662 309 219 16 0 chr1 10132500 10132564 -187062868 - PB1D9 SINE Alu -9 111 47 2 662 741 290 20 15 chr1 10132921 10133117 -187062315 - B3 SINE B2 -19 197 1 2 662 5005 138 203 17 chr1 10133147 10134168 -187061264 + RMER12 LTR ERVK 5 1215 -107 2 662 306 353 141 13 chr1 10134224 10134763 -187060669 + L2 LINE L2 1776 2383 -1036 2 662 335 250 10 0 chr1 10136297 10136393 -187059039 + L1MB5 LINE L1 5624 5720 -454 2 662 450 0 0 0 chr1 10136441 10136491 -187058941 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 662 569 271 52 10 chr1 10136545 10136739 -187058693 + L1MB5 LINE L1 5896 6097 -77 2 662 261 258 16 0 chr1 10136893 10136955 -187058477 - RSINE1 SINE B4 -99 66 4 2 662 263 282 0 66 chr1 10137780 10137856 -187057576 + PB1D7 SINE Alu 42 112 -8 2 662 303 28 0 0 chr1 10137940 10137976 -187057456 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 2 662 457 259 97 34 chr1 10138388 10138412 -187057020 - B2_Mm2 SINE B2 -7 188 164 2 662 288 102 0 0 chr1 10138412 10138461 -187056971 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 662 582 242 77 1 chr1 10138461 10138612 -187056820 - B3A SINE B2 -32 163 2 2 662 512 254 151 11 chr1 10139925 10140104 -187055328 + B3 SINE B2 1 204 -12 2 662 1106 258 55 81 chr1 10140609 10140786 -187054646 + RLTR11A2 LTR ERVK 20 193 -334 2 662 219 69 0 0 chr1 10140786 10140815 -187054617 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 662 1106 258 55 81 chr1 10140815 10141130 -187054302 + RLTR11A2 LTR ERVK 194 499 -28 2 662 250 372 107 21 chr1 10141656 10141796 -187053636 + MLT1A1 LTR MaLR 240 391 -17 2 662 21 0 0 0 chr1 10142315 10142336 -187053096 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 1020 72 157 0 chr1 10144772 10144925 -187050507 + B2_Mm1t SINE B2 1 177 -16 2 662 1719 172 83 8 chr1 10144925 10145276 -187050156 + ORR1C1 LTR MaLR 2 378 0 2 662 216 0 0 0 chr1 10145372 10145396 -187050036 + (CCA)n Simple_repeat Simple_repeat 2 25 0 2 662 767 179 7 7 chr1 10146481 10146622 -187048810 - B1_Mur4 SINE Alu 0 150 10 2 662 258 95 0 0 chr1 10146624 10146666 -187048766 + (CCA)n Simple_repeat Simple_repeat 1 42 0 2 662 642 296 25 24 chr1 10147332 10147539 -187047893 + B3A SINE B2 15 214 -2 2 662 357 305 83 13 chr1 10147654 10147810 -187047622 + MIR SINE MIR 46 212 -50 2 662 1584 199 166 18 chr1 10148326 10148766 -187046666 + RLTR16 LTR ERVK 1 505 0 2 662 294 29 0 0 chr1 10148949 10148984 -187046448 + (CCA)n Simple_repeat Simple_repeat 1 35 0 2 662 1941 224 73 23 chr1 10148991 10149471 -187045961 + RMER5 LTR ERV1 1 504 -30 2 662 339 293 71 109 chr1 10150351 10150535 -187044897 - B3A SINE B2 -17 199 23 2 662 420 203 8 81 chr1 10150539 10150641 -187044791 - PB1D10 SINE Alu -8 109 13 2 662 1528 57 5 0 chr1 10151254 10151446 -187043986 - B2_Mm1a SINE B2 0 193 1 2 662 2066 80 95 13 chr1 10152708 10153012 -187042420 + ORR1A4 LTR MaLR 1 329 0 2 662 36 0 0 0 chr1 10153687 10153723 -187041709 + AT_rich Low_complexity Low_complexity 1 36 0 2 662 1008 197 269 39 chr1 10154396 10154734 -187040698 + MTD LTR MaLR 1 416 -3 2 662 3170 227 144 38 chr1 10154737 10155691 -187039741 + MTD-int LTR MaLR 1 1342 -167 2 662 469 250 241 15 chr1 10156599 10156794 -187038638 + 7SK RNA RNA 1 239 -92 2 662 344 197 28 14 chr1 10156836 10156908 -187038524 - ID4 SINE ID 0 83 11 2 662 763 208 0 8 chr1 10157407 10157538 -187037894 + B3 SINE B2 1 130 -86 2 662 1221 48 0 0 chr1 10157576 10157722 -187037710 + B1_Mus1 SINE Alu 2 147 -1 2 662 201 89 52 35 chr1 10157723 10157781 -187037651 + A-rich Low_complexity Low_complexity 3 61 0 3 662 35 54 0 0 chr1 10157792 10157848 -187037584 + AT_rich Low_complexity Low_complexity 1 56 0 3 662 1580 42 5 0 chr1 10157970 10158160 -187037272 + B2_Mm1t SINE B2 2 192 -1 3 662 426 277 32 0 chr1 10158257 10158351 -187037081 - PB1D10 SINE Alu -6 111 15 3 662 233 226 16 145 chr1 10158260 10158384 -187037048 - MT2B2 LTR ERVL -326 258 151 3 662 272 191 0 0 chr1 10158611 10158679 -187036753 + Lx9 LINE L1 7576 7643 -1 3 662 584 183 175 0 chr1 10158679 10158799 -187036633 + B1_Mus1 SINE Alu 6 146 -2 3 662 29 0 0 0 chr1 10158801 10158830 -187036602 + AT_rich Low_complexity Low_complexity 1 29 0 3 662 751 250 54 15 chr1 10158833 10159036 -187036396 + B3 SINE B2 1 211 -5 3 662 406 243 176 6 chr1 10159067 10159249 -187036183 + MER2 DNA MER2_type 59 271 -74 3 662 212 260 140 0 chr1 10160052 10160102 -187035330 + B1F SINE Alu 4 60 -89 3 662 4116 48 79 0 chr1 10160356 10160875 -187034557 + LTRIS2 LTR ERV1 5 564 0 3 662 1798 150 113 13 chr1 10161240 10161612 -187033820 + RLTR9E LTR ERVK 1 409 0 3 662 617 91 0 0 chr1 10162188 10162276 -187033156 - B2_Mm2 SINE B2 -106 89 2 3 662 1240 48 0 0 chr1 10162295 10162442 -187032990 - B1_Mus2 SINE Alu 0 147 1 3 662 21 0 0 0 chr1 10163170 10163191 -187032241 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 326 294 98 0 chr1 10164783 10164875 -187030557 + PB1D7 SINE Alu 13 113 -7 3 662 26 0 0 0 chr1 10165573 10165599 -187029833 + AT_rich Low_complexity Low_complexity 1 26 0 3 662 190 274 59 0 chr1 10165654 10165705 -187029727 - L2a LINE L2 -11 3415 3362 3 662 3889 117 108 22 chr1 10165706 10166402 -187029030 + RMER6A LTR ERVK 1 756 0 3 662 3004 232 97 49 chr1 10166467 10167810 -187027622 + Lx7 LINE L1 4966 6363 -1333 3 662 1170 119 170 13 chr1 10167830 10168060 -187027372 + ORR1B1 LTR MaLR 41 306 -88 3 662 2723 41 0 0 chr1 10168067 10168405 -187027027 + ORR1A1 LTR MaLR 1 338 -8 3 662 571 108 0 0 chr1 10168415 10168498 -187026934 + ORR1B1 LTR MaLR 285 367 0 3 662 2101 291 65 25 chr1 10168505 10169218 -187026214 + Lx7 LINE L1 6369 7109 -587 3 662 1312 95 15 26 chr1 10169562 10169757 -187025675 - B2_Mm2 SINE B2 -2 193 1 3 662 265 204 0 0 chr1 10170098 10170147 -187025285 - ID2 SINE ID -28 55 7 3 662 23 0 0 0 chr1 10170726 10170749 -187024683 + AT_rich Low_complexity Low_complexity 1 23 0 3 662 211 229 21 0 chr1 10170824 10170872 -187024560 + B1F SINE Alu 98 146 -3 3 662 700 216 94 28 chr1 10171992 10172173 -187023259 - B3A SINE B2 0 198 6 3 662 24 0 0 0 chr1 10172180 10172204 -187023228 + AT_rich Low_complexity Low_complexity 1 24 0 3 662 30 45 0 0 chr1 10172225 10172269 -187023163 + AT_rich Low_complexity Low_complexity 1 44 0 3 662 589 210 92 0 chr1 10172906 10173025 -187022407 - B1_Mur2 SINE Alu -19 130 1 3 662 555 228 0 19 chr1 10175277 10175380 -187020052 + B3 SINE B2 106 206 -10 3 662 222 37 0 0 chr1 10175913 10175940 -187019492 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 3 662 383 274 10 0 chr1 10176019 10176121 -187019311 + RLTR42-int LTR ERVK 2872 2974 -2548 3 662 304 202 104 19 chr1 10176509 10176615 -187018817 + RLTR42-int LTR ERVK 4115 4229 -1293 3 662 211 296 132 24 chr1 10176617 10176700 -187018732 - B4A SINE B4 -120 172 81 3 662 564 117 54 24 chr1 10176719 10176833 -187018599 + CT-rich Low_complexity Low_complexity 58 174 0 3 662 411 21 0 0 chr1 10176833 10176881 -187018551 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 3 662 564 117 54 24 chr1 10176881 10176932 -187018500 + polypyrimidine Low_complexity Low_complexity 4 57 0 3 662 381 211 0 14 chr1 10176960 10177032 -187018400 - B4 SINE B4 -206 86 16 3 662 3934 125 107 15 chr1 10177078 10177800 -187017632 + RMER12 LTR ERVK 4 791 -531 3 662 996 234 15 19 chr1 10178068 10178334 -187017098 - Lx9 LINE L1 -124 7520 7256 3 662 507 33 0 0 chr1 10178489 10178550 -187016882 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 662 275 68 23 0 chr1 10178586 10178630 -187016802 - RMER12 LTR ERVK -646 676 632 3 662 542 326 79 33 chr1 10180595 10180925 -187014507 + MER119 DNA MER1_type 150 494 -89 3 662 1173 68 0 0 chr1 10181024 10181171 -187014261 + B1_Mus2 SINE Alu 1 147 0 3 662 22 0 0 0 chr1 10181410 10181432 -187014000 + GC_rich Low_complexity Low_complexity 1 22 0 3 662 29 28 0 0 chr1 10181631 10181667 -187013765 + AT_rich Low_complexity Low_complexity 1 36 0 3 662 608 226 19 82 chr1 10181669 10181828 -187013604 + B1_Mur1 SINE Alu 1 149 0 3 662 2207 187 96 18 chr1 10181851 10182341 -187013091 + RLTR11A LTR ERVK 1 528 0 3 662 23 33 0 0 chr1 10182748 10182778 -187012654 + AT_rich Low_complexity Low_complexity 1 30 0 3 662 717 189 75 8 chr1 10183035 10183168 -187012264 + B4A SINE B4 147 288 -4 3 662 616 309 83 16 chr1 10183666 10183919 -187011513 + B4A SINE B4 3 272 -20 3 662 459 123 0 0 chr1 10183958 10184039 -187011393 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 662 358 132 229 0 chr1 10184752 10184835 -187010597 - Lx9 LINE L1 -6 7638 7537 3 662 2725 181 116 21 chr1 10184811 10185382 -187010050 + Lx4B LINE L1 6430 7054 -4 3 662 447 282 10 1 chr1 10186441 10186555 -187008877 - B1F1 SINE Alu -6 114 1 3 662 328 303 28 77 chr1 10186555 10186601 -187008831 - ID SINE ID -145 79 41 3 662 797 325 15 0 chr1 10186791 10186994 -187008438 - B4 SINE B4 -2 290 85 3 662 219 103 0 0 chr1 10186994 10187033 -187008399 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 662 211 150 45 91 chr1 10187044 10187110 -187008322 - B4 SINE B4 -225 67 5 3 662 551 246 5 194 chr1 10187125 10187312 -187008120 - B3A SINE B2 0 198 44 3 662 22 0 0 0 chr1 10187559 10187581 -187007851 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 1450 214 159 3 chr1 10188190 10188536 -187006896 - MTD LTR MaLR -14 405 6 3 662 617 113 31 24 chr1 10190595 10190722 -187004710 + (TATG)n Simple_repeat Simple_repeat 2 129 0 3 662 24 32 0 0 chr1 10191277 10191308 -187004124 + AT_rich Low_complexity Low_complexity 1 31 0 3 662 226 326 242 16 chr1 10191412 10191602 -187003830 + MTEa LTR MaLR 29 261 -109 3 662 1224 41 0 7 chr1 10191719 10191858 -187003574 + B1_Mus2 SINE Alu 1 139 -8 3 662 345 24 0 0 chr1 10191858 10191900 -187003532 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 3 662 410 312 5 96 chr1 10191925 10191978 -187003454 + MTE-int LTR MaLR 75 128 -1452 3 662 1014 161 115 5 chr1 10191978 10192178 -187003254 - URR1A DNA MER1_type 0 226 5 3 662 410 312 5 96 chr1 10192178 10192312 -187003120 + MTE-int LTR MaLR 129 245 -1335 3 662 463 349 26 56 chr1 10192454 10192688 -187002744 + MTE-int LTR MaLR 285 511 -1069 3 662 478 277 58 36 chr1 10192849 10193022 -187002410 + MTE-int LTR MaLR 1408 1735 0 3 662 233 297 40 13 chr1 10193207 10193282 -187002150 + MTEa LTR MaLR 288 364 -15 3 662 1113 321 102 23 chr1 10193515 10193987 -187001445 + MER68 LTR ERVL 43 551 -12 3 662 332 353 97 10 chr1 10194339 10194545 -187000887 + Tigger7 DNA MER2_type 234 457 -2034 3 662 22 0 0 0 chr1 10195519 10195541 -186999891 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 1238 112 5 46 chr1 10196033 10196230 -186999202 - B2_Mm2 SINE B2 -6 189 1 3 662 184 255 35 52 chr1 10196855 10196913 -186998519 + L2b LINE L2 3318 3374 -1 3 662 477 219 0 0 chr1 10197093 10197175 -186998257 + B4 SINE B4 3 84 -208 3 662 1166 41 0 7 chr1 10197178 10197326 -186998106 + B1_Mus2 SINE Alu 1 147 0 3 662 228 307 0 73 chr1 10197326 10197363 -186998069 + BC1_Mm scRNA scRNA 81 116 -36 3 662 454 200 59 0 chr1 10197401 10197486 -186997946 + B1_Mur2 SINE Alu 40 129 -20 3 662 528 355 60 56 chr1 10197607 10198073 -186997359 + Lx8 LINE L1 6921 7388 -85 3 662 745 336 27 27 chr1 10198096 10198316 -186997116 + B4 SINE B4 73 292 0 3 662 204 135 0 0 chr1 10198394 10198431 -186997001 + (A)n Simple_repeat Simple_repeat 1 37 0 3 662 438 319 89 0 chr1 10198635 10198804 -186996628 + B4A SINE B4 2 185 -107 3 662 273 237 86 62 chr1 10198803 10198884 -186996548 + RSINE1 SINE B4 83 165 0 3 662 24 32 0 0 chr1 10198973 10199004 -186996428 + AT_rich Low_complexity Low_complexity 1 31 0 3 662 421 289 0 0 chr1 10199014 10199111 -186996321 - PB1D10 SINE Alu 0 117 21 3 662 563 248 155 18 chr1 10199966 10200165 -186995267 - B3A SINE B2 -2 214 2 3 662 30 59 0 0 chr1 10200849 10200900 -186994532 + AT_rich Low_complexity Low_complexity 1 51 0 3 662 1869 244 110 39 chr1 10201069 10201688 -186993744 + Lx8 LINE L1 6809 7471 -2 3 662 654 281 91 66 chr1 10201706 10202056 -186993376 + L1MC4a LINE L1 6480 6838 -1044 3 662 850 249 136 4 chr1 10202075 10202317 -186993115 + Lx8 LINE L1 6906 7179 -294 3 662 234 197 11 136 chr1 10202396 10202484 -186992948 + B4A SINE B4 206 282 -10 3 662 26 50 0 0 chr1 10203631 10203671 -186991761 + AT_rich Low_complexity Low_complexity 1 40 0 3 662 214 121 121 0 chr1 10205194 10205260 -186990172 + (CCTG)n Simple_repeat Simple_repeat 1 74 0 3 662 302 294 45 18 chr1 10205262 10205373 -186990059 + PB1 SINE Alu 14 127 0 3 662 228 64 85 0 chr1 10205452 10205499 -186989933 - L1_Mus4 LINE L1 0 6636 6586 3 662 1774 108 8 0 chr1 10205466 10205724 -186989708 - L1_Mus3 LINE L1 -355 6283 6024 3 662 369 58 0 0 chr1 10206872 10206924 -186988508 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 662 2163 51 173 0 chr1 10207136 10207431 -186988001 + ORR1A1 LTR MaLR 1 346 0 3 662 392 271 116 0 chr1 10207618 10207747 -186987685 + RMER15 LTR ERVL 416 559 -16 3 662 184 222 0 0 chr1 10207870 10207906 -186987526 - MIRb SINE MIR -11 257 222 3 662 324 250 93 83 chr1 10208038 10208243 -186987189 + L1MA7 LINE L1 5869 6075 -216 4 662 305 297 141 0 chr1 10208873 10209058 -186986374 + L1MDa LINE L1 1626 1836 -4797 4 662 703 158 243 12 chr1 10209138 10209311 -186986121 + B3 SINE B2 3 215 -1 4 662 4957 174 89 86 chr1 10209457 10209664 -186985768 + Lx9 LINE L1 6168 6348 -1296 4 662 354 23 0 0 chr1 10209664 10209707 -186985725 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 662 4957 174 89 86 chr1 10209707 10210805 -186984627 + Lx9 LINE L1 6349 7477 -167 4 662 1065 234 117 32 chr1 10210918 10211201 -186984231 + Lx8 LINE L1 6607 6913 -560 4 662 1387 89 16 0 chr1 10211208 10211398 -186984034 + B2_Mm2 SINE B2 2 194 -1 4 662 745 316 115 16 chr1 10211425 10211746 -186983686 + Lx8 LINE L1 6976 7328 -145 4 662 318 200 15 30 chr1 10211764 10211831 -186983601 + HAL1-3A_ME LINE L1 1979 2044 -814 4 662 578 208 113 32 chr1 10213164 10213288 -186982144 - B1F SINE Alu -1 148 15 4 662 899 189 222 122 chr1 10213290 10213633 -186981799 - MTE2a LTR MaLR 0 379 3 4 662 910 107 100 0 chr1 10213638 10213788 -186981644 + B2_Mm2 SINE B2 1 165 -30 4 662 235 268 126 11 chr1 10213996 10214083 -186981349 + Lx7 LINE L1 6999 7095 -601 4 662 583 294 7 7 chr1 10214115 10214262 -186981170 + Lx8 LINE L1 7180 7326 -147 4 662 1575 38 0 0 chr1 10214347 10214530 -186980902 + B2_Mm1t SINE B2 3 185 -8 4 662 387 222 12 0 chr1 10214593 10214674 -186980758 + ID4_ SINE ID 2 83 0 4 662 10019 68 24 16 chr1 10214810 10216491 -186978941 + Lx3_Mus LINE L1 5317 7009 0 4 662 213 65 0 0 chr1 10216560 10216591 -186978841 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 662 674 293 0 33 chr1 10216626 10216838 -186978594 + B3 SINE B2 2 206 -10 4 662 318 235 67 19 chr1 10217081 10217185 -186978247 - PB1D10 SINE Alu -5 112 4 4 662 273 291 67 19 chr1 10217272 10217377 -186978055 - PB1D10 SINE Alu -7 110 1 4 662 2271 54 3 3 chr1 10217701 10217996 -186977436 + L1Md_F3 LINE L1 6276 6570 -14 4 662 615 310 47 62 chr1 10218219 10218494 -186976938 + B4A SINE B4 9 279 -13 4 662 222 297 95 53 chr1 10219487 10219608 -186975824 - B1F SINE Alu -4 113 1 4 662 532 233 29 57 chr1 10219946 10220090 -186975342 + B1F2 SINE Alu 1 140 -9 4 662 649 271 56 30 chr1 10220634 10220832 -186974600 + ID_B1 SINE B4 9 211 -13 4 662 264 59 0 0 chr1 10220855 10220889 -186974543 + (A)n Simple_repeat Simple_repeat 1 34 0 4 662 364 312 11 11 chr1 10222581 10222756 -186972676 + G-rich Low_complexity Low_complexity 5 179 0 4 662 22 56 0 0 chr1 10222878 10222914 -186972518 + GC_rich Low_complexity Low_complexity 1 36 0 4 663 1104 52 0 0 chr1 10224343 10224478 -186970954 + B1_Mm SINE Alu 1 135 -12 4 663 596 253 246 17 chr1 10226454 10226864 -186968568 - MER34A1 LTR ERV1 -83 504 1 4 663 247 314 121 21 chr1 10226931 10227071 -186968361 - MIRb SINE MIR -86 182 29 4 663 250 234 31 0 chr1 10227419 10227483 -186967949 - B4A SINE B4 -45 247 182 4 663 324 0 0 0 chr1 10227706 10227742 -186967690 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 663 348 242 182 16 chr1 10227742 10227868 -186967564 - RSINE1 SINE B4 -16 149 3 4 663 234 193 84 0 chr1 10228177 10228260 -186967172 + L1MD LINE L1 3609 3698 -2448 4 663 390 343 14 14 chr1 10228267 10228412 -186967020 + RSINE1 SINE B4 4 148 -17 4 663 539 291 45 0 chr1 10228467 10228646 -186966786 + L1M5 LINE L1 3689 3875 -2271 4 663 351 0 0 0 chr1 10228764 10228803 -186966629 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 663 189 0 0 0 chr1 10228803 10228823 -186966609 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 663 1252 34 0 0 chr1 10228871 10229018 -186966414 + B1_Mm SINE Alu 1 147 0 4 663 2720 203 58 29 chr1 10229057 10230163 -186965269 + L1Md_A LINE L1 220 1394 -4489 4 663 313 75 38 0 chr1 10230164 10230217 -186965215 + (CCCCCT)n Simple_repeat Simple_repeat 5 59 0 4 663 272 143 41 0 chr1 10230218 10230267 -186965165 + MTD LTR MaLR 352 402 -17 4 663 506 261 214 27 chr1 10230300 10230742 -186964690 + L1M4 LINE L1 5217 5746 -433 4 663 1085 241 197 20 chr1 10230795 10231151 -186964281 + MTD LTR MaLR 1 419 0 4 663 290 331 33 8 chr1 10231215 10231337 -186964095 + MLT1A1 LTR MaLR 2 126 -282 4 663 185 161 32 0 chr1 10231448 10231510 -186963922 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 4 663 341 254 191 0 chr1 10232044 10232154 -186963278 - B1F2 SINE Alu 0 149 19 4 663 2035 146 151 8 chr1 10232155 10232520 -186962912 + MTC LTR MaLR 1 417 -4 4 663 289 266 17 26 chr1 10233443 10233559 -186961873 + (TATG)n Simple_repeat Simple_repeat 3 117 0 4 663 520 294 77 53 chr1 10233568 10233707 -186961725 - B4A SINE B4 -77 215 70 4 663 1956 117 26 100 chr1 10233707 10234057 -186961375 - ORR1A3 LTR MaLR -2 324 1 4 663 520 294 77 53 chr1 10234057 10234125 -186961307 - B4A SINE B4 -223 69 3 4 663 276 302 125 0 chr1 10234135 10234231 -186961201 - PB1D10 SINE Alu -7 110 3 4 663 302 268 110 0 chr1 10234152 10234234 -186961198 - ID_B1 SINE B4 -53 171 81 4 663 331 314 101 14 chr1 10234273 10234412 -186961020 - RSINE1 SINE B4 -5 160 10 4 663 600 273 43 11 chr1 10234492 10234677 -186960755 + B3A SINE B2 2 192 -6 4 663 858 159 0 27 chr1 10234679 10234828 -186960604 + B3 SINE B2 6 150 -66 4 663 455 217 0 0 chr1 10234892 10234984 -186960448 + B3 SINE B2 119 210 -6 4 663 25 31 0 0 chr1 10235258 10235290 -186960142 + AT_rich Low_complexity Low_complexity 1 32 0 4 663 449 214 22 0 chr1 10235296 10235385 -186960047 + PB1D7 SINE Alu 30 120 0 4 663 339 269 210 91 chr1 10235407 10235583 -186959849 - B3A SINE B2 0 198 2 4 663 3894 127 39 7 chr1 10235631 10236243 -186959189 + Lx2 LINE L1 6366 6997 0 4 663 225 306 89 24 chr1 10236438 10236562 -186958870 + MER5A1 DNA MER1_type 33 164 -2 4 663 728 255 109 5 chr1 10236709 10236910 -186958522 + ID_B1 SINE B4 2 223 -1 4 663 282 203 38 75 chr1 10237080 10237160 -186958272 - MLT1A LTR MaLR -297 77 1 4 663 319 279 50 75 chr1 10237918 10238077 -186957355 + MER67A LTR ERV1 89 243 -300 4 663 349 185 15 0 chr1 10238649 10238714 -186956718 + RLTR40 LTR ERVK 5 70 -747 4 663 234 294 14 14 chr1 10238724 10238869 -186956563 + (CAGA)n Simple_repeat Simple_repeat 2 146 0 4 663 467 60 0 15 chr1 10238877 10238945 -186956487 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 663 1012 229 4 28 chr1 10238978 10239225 -186956207 + RLTR40 LTR ERVK 571 811 -6 4 663 23 0 0 0 chr1 10239520 10239543 -186955889 + AT_rich Low_complexity Low_complexity 1 23 0 4 663 20908 83 23 1 chr1 10239750 10243293 -186952139 + L1Md_F LINE L1 382 4008 -1875 4 663 1069 108 0 23 chr1 10243290 10243502 -186951930 + L1Md_F2 LINE L1 6394 6582 0 4 663 306 309 57 0 chr1 10243511 10243634 -186951798 + B1F2 SINE Alu 2 131 -18 4 663 1121 191 224 26 chr1 10243674 10243986 -186951446 + ORR1D1 LTR MaLR 1 374 0 4 663 21 0 0 0 chr1 10244502 10244523 -186950909 + AT_rich Low_complexity Low_complexity 1 21 0 4 663 402 21 0 0 chr1 10244926 10244973 -186950459 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 663 258 32 0 0 chr1 10245013 10245044 -186950388 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 663 372 22 0 0 chr1 10245084 10245129 -186950303 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 663 183 42 0 0 chr1 10245170 10245194 -186950238 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 663 182 129 0 0 chr1 10245326 10245357 -186950075 - L2b LINE L2 -298 3077 3047 4 663 272 291 35 0 chr1 10246253 10246339 -186949093 + MER44B DNA MER2_type 1 89 -461 4 663 611 309 40 0 chr1 10246393 10246545 -186948887 - RSINE1 SINE B4 -2 163 6 4 663 246 62 0 0 chr1 10246624 10246656 -186948776 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 663 226 325 12 12 chr1 10246723 10246802 -186948630 - MLT1D LTR MaLR -8 497 419 4 663 276 254 0 0 chr1 10246802 10246857 -186948575 + ID4_ SINE ID 1 55 -28 4 663 342 331 29 29 chr1 10246870 10247041 -186948391 - MLT1D LTR MaLR -75 430 260 4 663 324 143 0 0 chr1 10248067 10248123 -186947309 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 4 663 333 271 41 10 chr1 10248135 10248232 -186947200 - PB1D7 SINE Alu -16 104 5 4 663 23 0 0 0 chr1 10248352 10248375 -186947057 + GC_rich Low_complexity Low_complexity 1 23 0 4 663 247 317 154 0 chr1 10248499 10248622 -186946810 - LTR85a LTR Gypsy? -22 680 539 4 663 437 0 19 0 chr1 10248703 10248756 -186946676 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 663 1151 300 100 46 chr1 10248861 10249574 -186945858 + L1_Mur3 LINE L1 4927 5714 -586 4 663 650 111 46 0 chr1 10249574 10249682 -186945750 - B2_Mm2 SINE B2 -81 114 2 4 663 2397 68 34 0 chr1 10250209 10250562 -186944870 + MTB LTR MaLR 1 365 -35 4 663 253 306 101 16 chr1 10250776 10250965 -186944467 - LTR85a LTR Gypsy? -478 224 20 4 663 184 333 68 34 chr1 10251030 10251176 -186944256 - L2a LINE L2 -1 3425 3275 4 663 240 35 0 0 chr1 10251462 10251491 -186943941 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 663 357 109 0 0 chr1 10251491 10251555 -186943877 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 663 243 271 73 48 chr1 10251966 10252090 -186943342 + L1M5 LINE L1 5738 5864 -260 4 663 663 232 52 0 chr1 10252666 10252821 -186942611 - B4A SINE B4 -2 290 128 4 663 1200 257 74 10 chr1 10252820 10253179 -186942253 - MTD LTR MaLR -16 403 26 4 663 325 207 33 54 chr1 10253202 10253294 -186942138 - B4A SINE B4 -165 127 38 4 663 681 260 87 48 chr1 10253837 10254043 -186941389 + B3 SINE B2 3 216 0 4 663 281 270 92 34 chr1 10254456 10254575 -186940857 - MTEa LTR MaLR -15 364 239 4 663 383 231 225 25 chr1 10254791 10254911 -186940521 - B1_Mus2 SINE Alu -1 146 3 4 663 1188 131 0 43 chr1 10255014 10255222 -186940210 - MTC LTR MaLR 0 421 223 4 663 303 28 0 0 chr1 10255641 10255677 -186939755 + (T)n Simple_repeat Simple_repeat 1 36 0 4 663 1196 130 10 10 chr1 10255866 10256068 -186939364 - MTC LTR MaLR -219 202 1 4 663 353 270 45 0 chr1 10256117 10256228 -186939204 + PB1D10 SINE Alu 2 117 0 5 663 1341 260 52 16 chr1 10256368 10256755 -186938677 - MTD LTR MaLR 0 419 19 5 663 234 349 0 0 chr1 10256765 10256831 -186938601 - ID4_ SINE ID -10 73 8 5 663 778 269 89 70 chr1 10256854 10257226 -186938206 + RLTR14 LTR ERV1 1 379 -3 5 663 720 155 82 44 chr1 10257227 10257362 -186938070 - B1_Mur2 SINE Alu -7 142 3 5 663 310 269 72 65 chr1 10257396 10257535 -186937897 - B1F1 SINE Alu -9 140 1 5 663 476 235 135 56 chr1 10258100 10258226 -186937206 - ID_B1 SINE B4 -69 223 84 5 663 2395 279 111 19 chr1 10258678 10258759 -186936673 - Lx8 LINE L1 0 7473 7395 5 663 2241 146 68 3 chr1 10258759 10259129 -186936303 - ORR1B1 LTR MaLR 0 394 1 5 663 2395 291 137 19 chr1 10259129 10260133 -186935299 - Lx8 LINE L1 -79 7394 6183 5 663 297 144 64 9 chr1 10260133 10260192 -186935240 + ORR1A4 LTR MaLR 1 94 -300 5 663 2801 53 48 3 chr1 10260192 10260567 -186934865 + L1_Mus3 LINE L1 6247 6638 0 5 663 269 138 86 0 chr1 10260567 10260580 -186934852 + ORR1A4 LTR MaLR 95 108 -286 5 663 3551 110 58 129 chr1 10260580 10261342 -186934090 + ORR1A4-int LTR MaLR 1252 1959 -4 5 663 1834 108 32 13 chr1 10261382 10261693 -186933739 + ORR1A4 LTR MaLR 5 321 -8 5 663 369 95 0 0 chr1 10261694 10261757 -186933675 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 5 663 581 106 21 0 chr1 10261765 10261859 -186933573 + (TATG)n Simple_repeat Simple_repeat 3 98 0 5 663 1150 287 101 22 chr1 10261860 10262053 -186933379 - Lx8 LINE L1 -1530 6166 5941 5 663 1529 193 93 3 chr1 10262053 10262396 -186933036 - ORR1D1 LTR MaLR 0 374 1 5 663 5942 244 74 24 chr1 10262396 10264384 -186931048 - Lx8 LINE L1 -1756 5940 3860 5 663 269 286 0 13 chr1 10264406 10264484 -186930948 + L1_Mur3 LINE L1 2916 2992 -2888 5 663 243 0 0 0 chr1 10264485 10264512 -186930920 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 663 921 118 17 0 chr1 10264515 10264668 -186930764 + B2_Mm2 SINE B2 1 169 -47 5 663 342 0 0 0 chr1 10264668 10264706 -186930726 + (TAG)n Simple_repeat Simple_repeat 1 38 0 5 663 1494 273 135 30 chr1 10264706 10264954 -186930478 + L1_Mur3 LINE L1 2991 3265 -2615 5 663 888 164 0 0 chr1 10264954 10265100 -186930332 + B1_Mur2 SINE Alu 3 148 -1 5 663 1494 273 135 30 chr1 10265100 10265576 -186929856 + L1_Mur3 LINE L1 3266 3791 -2089 5 663 494 234 22 10 chr1 10266511 10266649 -186928783 - B1_Mur1 SINE Alu 0 149 13 5 663 461 181 106 99 chr1 10268020 10268161 -186927271 + B4 SINE B4 151 292 0 5 663 302 222 0 11 chr1 10268161 10268252 -186927180 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 663 504 0 0 0 chr1 10269033 10269089 -186926343 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 663 32 0 0 0 chr1 10271273 10271305 -186924127 + AT_rich Low_complexity Low_complexity 1 32 0 5 663 484 189 0 24 chr1 10271306 10271431 -186924001 - Lx5 LINE L1 -5 7045 6924 5 663 180 0 0 0 chr1 10272567 10272587 -186922845 + (T)n Simple_repeat Simple_repeat 1 20 0 5 663 415 300 8 16 chr1 10272664 10272786 -186922646 - B4 SINE B4 -86 206 86 5 663 371 361 28 0 chr1 10273418 10273598 -186921834 - LTR40a LTR ERVL -10 509 325 5 663 189 0 0 0 chr1 10274433 10274454 -186920978 + (T)n Simple_repeat Simple_repeat 1 21 0 5 663 1238 54 0 0 chr1 10274454 10274601 -186920831 - B1_Mus2 SINE Alu 0 147 1 5 663 453 282 7 51 chr1 10274691 10274829 -186920603 + B1F SINE Alu 3 134 -15 5 663 2086 161 55 19 chr1 10274829 10275208 -186920224 + ORR1B1 LTR MaLR 2 394 0 5 663 420 213 94 41 chr1 10275779 10276058 -186919374 + RMER17C LTR ERVK 1 482 -327 5 663 901 140 11 0 chr1 10276085 10276263 -186919169 + CT-rich Low_complexity Low_complexity 1 180 0 5 663 332 228 0 0 chr1 10276693 10276772 -186918660 - MLT1D LTR MaLR -346 159 81 5 663 7131 78 3 2 chr1 10278240 10279664 -186915768 - L1_Mus1 LINE L1 0 6567 5140 5 663 482 363 123 4 chr1 10279954 10280181 -186915251 + LTR16C LTR ERVL 236 489 0 5 663 182 234 77 15 chr1 10280392 10280457 -186914975 - L2b LINE L2 -253 3122 3054 5 663 231 355 138 50 chr1 10280604 10280865 -186914567 + LTR16A LTR ERVL 88 371 -80 5 663 627 116 0 0 chr1 10280911 10281032 -186914400 + (A)n Simple_repeat Simple_repeat 1 121 0 5 663 185 83 28 0 chr1 10281037 10281073 -186914359 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 5 663 204 97 0 0 chr1 10281270 10281301 -186914131 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 663 833 172 21 0 chr1 10281358 10281503 -186913929 - B1_Mus1 SINE Alu 0 148 1 5 663 261 350 14 41 chr1 10282090 10282236 -186913196 + RMER15 LTR ERVL 432 573 -2 5 663 270 256 120 43 chr1 10282622 10282806 -186912626 + L1ME2z LINE L1 5955 6152 -292 5 663 521 269 91 23 chr1 10283618 10283793 -186911639 - MER5A DNA MER1_type 0 189 3 5 663 211 300 26 103 chr1 10284398 10284476 -186910956 - RSINE1 SINE B4 -2 163 92 5 663 1613 188 68 42 chr1 10284519 10284565 -186910867 - MT2B LTR ERVL 0 601 545 5 663 639 0 0 0 chr1 10284565 10284636 -186910796 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 663 1613 188 68 42 chr1 10284636 10284729 -186910703 - MT2B LTR ERVL -57 544 455 5 663 1996 95 50 17 chr1 10284729 10285028 -186910404 - RLTR27 LTR ERVK 0 309 1 5 663 1613 195 101 89 chr1 10285028 10285367 -186910065 - MT2B LTR ERVL -147 454 1 5 663 635 266 91 55 chr1 10285367 10285566 -186909866 - B4 SINE B4 -85 207 2 5 663 377 175 16 0 chr1 10285691 10285754 -186909678 - B1F SINE Alu -7 142 79 5 663 5915 202 80 20 chr1 10285775 10287378 -186908054 - Lx9 LINE L1 -7 7637 5816 5 663 716 278 6 24 chr1 10287496 10287662 -186907770 - RSINE1 SINE B4 0 165 3 5 663 399 221 52 0 chr1 10288217 10288294 -186907138 + RSINE1 SINE B4 5 85 -80 5 663 818 351 46 25 chr1 10288413 10288781 -186906651 - LTR31 LTR ERV1 -36 583 208 5 663 312 326 33 66 chr1 10288967 10289118 -186906314 - B4A SINE B4 0 292 147 5 663 305 286 130 0 chr1 10289291 10289368 -186906064 - RSINE1 SINE B4 -1 164 78 5 663 535 138 22 3 chr1 10289369 10289469 -186905963 - MTA_Mm LTR MaLR -23 384 277 5 663 440 155 461 31 chr1 10290039 10290264 -186905168 + Lx4B LINE L1 6715 7036 -22 5 663 538 317 68 0 chr1 10291096 10291257 -186904175 - B4 SINE B4 -120 172 1 5 663 1278 44 0 0 chr1 10291754 10291912 -186903520 + L1_Mus2 LINE L1 6409 6566 0 5 663 253 204 56 0 chr1 10292405 10292459 -186902973 - L1MB1 LINE L1 -89 6079 6023 5 663 2090 149 12 15 chr1 10292466 10292800 -186902632 - ORR1A0 LTR MaLR -8 338 6 5 663 427 150 193 0 chr1 10292854 10292994 -186902438 - Lx9 LINE L1 -7 7637 7471 5 663 384 262 56 14 chr1 10293031 10293174 -186902258 + L1MCb LINE L1 744 892 -5153 5 663 537 320 122 10 chr1 10293596 10293801 -186901631 + B4 SINE B4 1 228 -64 5 663 4808 157 75 41 chr1 10293868 10294746 -186900686 + RMER13B LTR ERVK 1 908 0 5 663 326 154 29 44 chr1 10295162 10295230 -186900202 - ID4_ SINE ID -13 70 4 5 663 271 125 54 0 chr1 10295422 10295478 -186899954 - B1_Mur4 SINE Alu 0 150 92 5 663 311 230 13 13 chr1 10297617 10297692 -186897740 + MLT1C LTR MaLR 58 132 -335 5 663 490 262 316 12 chr1 10297715 10297986 -186897446 - MTD LTR MaLR -14 405 53 5 663 772 293 66 37 chr1 10298483 10298756 -186896676 + MLT1C LTR MaLR 187 467 0 5 663 204 241 0 0 chr1 10299195 10299253 -186896179 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 663 524 262 10 0 chr1 10299892 10299995 -186895437 + PB1D10 SINE Alu 7 110 -7 5 663 224 339 153 21 chr1 10300456 10300646 -186894786 - B3 SINE B2 0 216 2 5 663 615 291 65 19 chr1 10300494 10300648 -186894784 - RSINE1 SINE B4 -4 161 1 5 663 2409 104 104 0 chr1 10300713 10301068 -186894364 + ORR1B1 LTR MaLR 3 394 0 5 663 355 239 100 44 chr1 10301275 10301437 -186893995 - RLTR13D3 LTR ERVK 0 1114 981 5 663 264 167 0 0 chr1 10301689 10301731 -186893701 - B2_Mm2 SINE B2 -153 42 1 5 663 333 345 79 99 chr1 10302471 10302825 -186892607 - ORR1E LTR MaLR -5 354 8 5 663 1223 28 7 0 chr1 10303174 10303319 -186892113 + B1_Mm SINE Alu 2 147 0 5 663 498 33 0 0 chr1 10303467 10303527 -186891905 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 663 378 0 0 0 chr1 10303527 10303568 -186891864 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 663 362 313 0 27 chr1 10303574 10303719 -186891713 + (TG)n Simple_repeat Simple_repeat 1 141 0 5 663 1158 126 34 0 chr1 10303719 10303894 -186891538 + B2_Mm2 SINE B2 1 181 -14 5 663 362 313 0 27 chr1 10303894 10303932 -186891500 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 663 250 311 67 13 chr1 10304492 10304567 -186890865 - ID4 SINE ID 0 83 5 5 663 302 296 44 15 chr1 10304583 10304720 -186890712 - B1F SINE Alu -8 141 1 5 663 253 127 409 0 chr1 10304818 10304889 -186890543 + URR1A DNA MER1_type 2 101 -125 5 663 405 225 57 79 chr1 10305154 10305294 -186890138 + RLTR8 LTR ERVK 228 364 0 5 663 319 290 23 15 chr1 10305535 10305668 -186889764 + SRV_MM-int LTR ERVK 288 421 -7796 5 663 4096 52 27 0 chr1 10306813 10307327 -186888105 + L1_Mus1 LINE L1 6040 6567 0 5 663 3369 336 56 46 chr1 10307341 10307985 -186887447 + SRV_MM-int LTR ERVK 1347 1976 -4191 5 663 2854 46 72 19 chr1 10307985 10308361 -186887071 - MTA_Mm LTR MaLR 0 396 1 5 663 3369 336 56 46 chr1 10308361 10311701 -186883731 + SRV_MM-int LTR ERVK 1977 5370 -797 5 663 1153 69 0 20 chr1 10312109 10312256 -186883176 - B1_Mus2 SINE Alu 0 147 4 5 663 255 283 35 9 chr1 10313145 10313259 -186882173 + RLTR14-int LTR ERV1 4894 5010 -307 5 663 490 244 14 22 chr1 10314123 10314261 -186881171 + RLTR8 LTR ERVK 229 365 0 5 663 841 85 15 8 chr1 10314261 10314391 -186881041 + URR1A DNA MER1_type 95 225 -1 5 663 625 274 89 43 chr1 10314405 10314729 -186880703 - Lx8 LINE L1 -56 7417 7079 5 663 495 0 0 0 chr1 10315438 10315493 -186879939 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 663 264 178 0 40 chr1 10316229 10316305 -186879127 + CT-rich Low_complexity Low_complexity 3 75 0 5 663 722 60 0 10 chr1 10316588 10316689 -186878743 + (TTTTC)n Simple_repeat Simple_repeat 3 102 0 5 663 21 0 0 0 chr1 10316944 10316965 -186878467 + AT_rich Low_complexity Low_complexity 1 21 0 5 663 318 342 127 95 chr1 10317266 10317518 -186877914 - B4A SINE B4 0 292 33 6 663 899 179 7 0 chr1 10317649 10317794 -186877638 - B1_Mus1 SINE Alu -1 147 2 6 663 294 29 0 0 chr1 10317803 10317838 -186877594 + (CATA)n Simple_repeat Simple_repeat 4 38 0 6 663 324 0 0 0 chr1 10317840 10317876 -186877556 + (CCA)n Simple_repeat Simple_repeat 3 38 0 6 663 478 270 7 125 chr1 10317900 10318044 -186877388 - B1_Mur2 SINE Alu -20 129 3 6 663 271 308 104 47 chr1 10319837 10320061 -186875371 - MIRc SINE MIR -43 225 1 6 663 570 51 0 0 chr1 10320472 10320550 -186874882 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 663 1147 299 113 19 chr1 10321448 10322404 -186873028 - L1MA6 LINE L1 -365 5935 4814 6 663 1960 156 43 23 chr1 10322446 10322793 -186872639 - ORR1B2 LTR MaLR -13 354 1 6 663 306 194 0 0 chr1 10322799 10322866 -186872566 + T-rich Low_complexity Low_complexity 1 67 0 6 663 321 266 127 9 chr1 10322918 10323028 -186872404 - L1MA6 LINE L1 -1426 4717 4595 6 663 1240 168 19 5 chr1 10323051 10323260 -186872172 - B3 SINE B2 -4 212 1 6 663 284 315 4 0 chr1 10323267 10323391 -186872041 - L1_Mm LINE L1 -1304 4579 4448 6 663 333 0 0 0 chr1 10323444 10323481 -186871951 + (CAA)n Simple_repeat Simple_repeat 3 39 0 6 663 180 0 0 0 chr1 10325498 10325518 -186869914 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 663 671 325 43 46 chr1 10325518 10325799 -186869633 - B4A SINE B4 -1 291 12 6 663 540 330 131 37 chr1 10326077 10326429 -186869003 + MER21B LTR ERV1 370 754 -109 6 663 414 291 77 26 chr1 10326493 10326687 -186868745 - L1ME3A LINE L1 -47 6126 5923 6 663 382 296 179 0 chr1 10327076 10327255 -186868177 + MIR SINE MIR 8 218 -44 6 663 308 294 37 47 chr1 10327933 10328040 -186867392 - L2a LINE L2 -16 3410 3305 6 663 417 286 26 9 chr1 10328356 10328469 -186866963 - PB1D10 SINE Alu -2 115 1 6 663 417 306 201 17 chr1 10328755 10329116 -186866316 + L1MEd LINE L1 975 1434 -4791 6 663 599 233 100 35 chr1 10329119 10329170 -186866262 - B3 SINE B2 0 216 166 6 663 333 0 0 0 chr1 10329170 10329207 -186866225 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 663 207 0 0 0 chr1 10329207 10329229 -186866203 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 663 599 233 100 35 chr1 10329229 10329376 -186866056 - B3 SINE B2 -51 165 5 6 663 24911 109 22 4 chr1 10329401 10335641 -186859791 - L1_Mus1 LINE L1 0 6567 222 6 663 244 255 65 9 chr1 10336023 10336130 -186859302 - L1MB7 LINE L1 -36 6148 6036 6 663 28 48 0 0 chr1 10336168 10336210 -186859222 + AT_rich Low_complexity Low_complexity 1 42 0 6 663 459 46 0 65 chr1 10336775 10336868 -186858564 + (TCTCCC)n Simple_repeat Simple_repeat 2 88 0 6 663 1769 215 39 68 chr1 10337126 10337685 -186857747 + RLTR20B3 LTR ERVK 25 534 0 6 663 402 317 24 8 chr1 10337857 10337981 -186857451 - MLT1D LTR MaLR -118 387 262 6 663 445 268 8 51 chr1 10338004 10338122 -186857310 + ORR1E LTR MaLR 1 113 -246 6 663 274 330 10 69 chr1 10338226 10338327 -186857105 + ORR1E LTR MaLR 257 351 -8 6 663 231 146 0 0 chr1 10339361 10339402 -186856030 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 6 663 276 174 35 11 chr1 10339976 10340063 -186855369 + CT-rich Low_complexity Low_complexity 2 90 0 6 663 236 246 70 84 chr1 10340066 10340137 -186855295 - ID4_ SINE ID -12 71 2 6 663 387 284 73 22 chr1 10340152 10340289 -186855143 - B1F SINE Alu 0 149 6 6 663 1121 193 20 0 chr1 10340906 10341108 -186854324 + B3 SINE B2 6 211 -5 6 663 1006 131 11 6 chr1 10341149 10341326 -186854106 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 6 663 1370 55 0 6 chr1 10341338 10341519 -186853913 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 663 668 138 9 0 chr1 10341540 10341656 -186853776 + (TCC)n Simple_repeat Simple_repeat 2 118 0 6 663 309 145 0 0 chr1 10341653 10341715 -186853717 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 663 958 271 68 8 chr1 10341809 10342203 -186853229 - L1MA5 LINE L1 -6 6294 5877 6 663 536 0 0 15 chr1 10342783 10342848 -186852584 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 6 663 773 249 16 11 chr1 10343206 10343389 -186852043 + B2_Mm2 SINE B2 6 189 -6 6 663 2205 137 63 38 chr1 10343914 10344308 -186851124 - RLTR20B2 LTR ERVK -156 404 1 6 663 585 293 166 14 chr1 10344310 10345110 -186850322 - L1_Mur3 LINE L1 -132 5748 4827 6 663 550 289 127 25 chr1 10345108 10345502 -186849930 - L1M2 LINE L1 -1613 4530 4097 6 663 833 330 33 22 chr1 10345521 10345797 -186849635 + B4 SINE B4 14 292 0 6 663 241 278 77 11 chr1 10345750 10345841 -186849591 + B3 SINE B2 116 212 -4 6 663 6637 152 17 80 chr1 10345852 10346654 -186848778 + L1_Mus4 LINE L1 4566 5292 -591 6 663 6218 90 7 1 chr1 10346654 10347512 -186847920 + L1_Mus3 LINE L1 5774 6636 -2 6 663 6637 148 25 24 chr1 10347512 10349138 -186846294 + L1_Mus4 LINE L1 5293 6926 -71 6 663 3028 29 0 0 chr1 10349195 10349541 -186845891 + ORR1A0 LTR MaLR 1 346 0 6 663 13910 55 9 1 chr1 10349541 10351319 -186844113 + ORR1A0-int LTR MaLR 1 1792 0 6 663 2547 28 63 0 chr1 10351319 10351637 -186843795 + ORR1A0 LTR MaLR 1 338 -8 6 663 537 258 142 13 chr1 10351685 10351917 -186843515 - L1_Mur3 LINE L1 -1781 4099 3838 6 663 387 340 35 7 chr1 10351936 10352081 -186843351 - B1F SINE Alu 0 149 1 6 663 4506 62 2 0 chr1 10352377 10352975 -186842457 - L1Md_F2 LINE L1 -343 6239 5641 6 82 20097 80 12 9 chr1 10352976 10355391 -186840041 - L1Md_F LINE L1 -1655 4228 1806 6 664 3008 95 44 0 chr1 10355391 10355824 -186839608 + RLTR44E LTR ERVK 1 452 0 6 664 20097 111 42 5 chr1 10355824 10357191 -186838241 - L1Md_F LINE L1 -4078 1805 387 6 664 10085 124 4 28 chr1 10357193 10359352 -186836080 - L1Md_F LINE L1 -3060 2823 725 6 664 426 254 22 7 chr1 10359349 10359488 -186835944 - L1Md_F LINE L1 -5801 815 675 6 664 382 200 30 165 chr1 10359569 10359733 -186835699 - L1VL2 LINE L1 -6065 357 174 6 664 749 234 20 59 chr1 10360338 10360542 -186834890 - B3A SINE B2 -2 196 1 6 664 1068 76 0 12 chr1 10360577 10360737 -186834695 - L1Md_F2 LINE L1 -2 6580 6423 6 664 620 333 0 18 chr1 10361343 10361508 -186833924 + RSINE1 SINE B4 4 165 0 6 664 204 200 0 0 chr1 10361508 10361558 -186833874 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 664 308 303 0 38 chr1 10361629 10361708 -186833724 + RSINE1 SINE B4 90 165 0 6 664 555 182 0 0 chr1 10361708 10361829 -186833603 + (CA)n Simple_repeat Simple_repeat 1 121 0 6 664 324 0 0 0 chr1 10361901 10361937 -186833495 + (CATAT)n Simple_repeat Simple_repeat 3 38 0 6 664 234 215 22 122 chr1 10362473 10362563 -186832869 + RMER19A LTR ERVK 62 142 -595 6 664 273 279 22 44 chr1 10362889 10362979 -186832453 - ORR1D2 LTR MaLR 0 359 272 6 664 210 338 49 12 chr1 10362950 10363031 -186832401 + B4A SINE B4 91 174 -118 6 664 1378 234 41 35 chr1 10363115 10363433 -186831999 - ORR1D2 LTR MaLR -50 320 1 6 664 6915 82 20 6 chr1 10363948 10365389 -186830043 + L1_Mus2 LINE L1 5096 6565 -1 6 664 243 0 0 0 chr1 10365755 10365782 -186829650 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 664 1089 128 0 0 chr1 10366241 10366421 -186829011 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 664 922 150 0 16 chr1 10366429 10366565 -186828867 + polypyrimidine Low_complexity Low_complexity 47 180 0 6 664 1122 122 0 0 chr1 10366565 10366745 -186828687 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 664 922 150 0 16 chr1 10366745 10366791 -186828641 + polypyrimidine Low_complexity Low_complexity 1 46 0 6 664 233 209 0 0 chr1 10366793 10366836 -186828596 + CT-rich Low_complexity Low_complexity 6 48 0 6 664 308 348 113 73 chr1 10366897 10367251 -186828181 - L2 LINE L2 -675 2744 2377 6 664 588 307 126 11 chr1 10367294 10367485 -186827947 - B4A SINE B4 -79 213 1 6 664 901 231 209 23 chr1 10369316 10369624 -186825808 + MTEb LTR MaLR 3 367 -12 6 664 795 293 56 12 chr1 10370060 10370399 -186825033 + L1MC1 LINE L1 5532 5885 -448 6 664 933 225 6 23 chr1 10370407 10370584 -186824848 + B3 SINE B2 1 174 -42 6 664 564 15 0 0 chr1 10370591 10370656 -186824776 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 664 418 223 11 0 chr1 10370791 10370885 -186824547 + L1MC1 LINE L1 6230 6324 -9 6 664 251 200 106 15 chr1 10371023 10371089 -186824343 + L2b LINE L2 3303 3374 -1 6 664 418 280 76 53 chr1 10371422 10371554 -186823878 - RSINE1 SINE B4 -29 136 2 6 664 5632 99 9 5 chr1 10371560 10372362 -186823070 - L1Md_F2 LINE L1 -3 6579 5775 6 664 2187 85 0 0 chr1 10372369 10372675 -186822757 - L1Md_F2 LINE L1 -715 5168 4863 6 664 34781 52 8 4 chr1 10372688 10378193 -186817239 + L1Md_T LINE L1 98 5586 -297 6 664 8424 34 0 0 chr1 10378193 10379189 -186816243 + L1Md_T LINE L1 5587 6582 0 6 664 24231 88 14 7 chr1 10379194 10383455 -186811977 - L1Md_F LINE L1 -1007 4876 584 6 664 263 346 0 12 chr1 10383650 10383732 -186811700 + PB1D10 SINE Alu 37 117 0 6 664 6857 86 9 1 chr1 10384350 10385559 -186809873 + L1_Mus1 LINE L1 5351 6567 0 6 664 256 281 0 0 chr1 10385623 10385687 -186809745 + CT-rich Low_complexity Low_complexity 3 66 0 6 664 277 309 74 161 chr1 10385687 10385765 -186809667 - MLT1A1 LTR MaLR -49 359 291 6 664 2434 101 90 5 chr1 10385765 10386142 -186809290 + RLTR9E LTR ERVK 1 409 0 6 664 277 309 74 161 chr1 10386142 10386453 -186808979 - MLT1A1 LTR MaLR -118 290 4 6 664 1855 205 83 18 chr1 10386639 10387036 -186808396 - MT2A LTR ERVL -107 426 4 6 664 868 199 132 20 chr1 10387072 10387411 -186808021 + RMER6B LTR ERVK 1 451 -10 6 664 24 0 0 0 chr1 10387634 10387658 -186807774 + AT_rich Low_complexity Low_complexity 1 24 0 6 664 21 0 0 0 chr1 10387820 10387841 -186807591 + AT_rich Low_complexity Low_complexity 1 21 0 6 664 717 252 37 19 chr1 10388094 10388256 -186807176 - B3A SINE B2 -32 166 2 6 664 21 36 0 0 chr1 10389362 10389390 -186806042 + AT_rich Low_complexity Low_complexity 1 28 0 6 664 939 258 81 6 chr1 10390537 10390869 -186804563 - L1MB7 LINE L1 -23 6161 5805 6 664 311 0 0 25 chr1 10391519 10391559 -186803873 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 664 1131 59 0 0 chr1 10391559 10391695 -186803737 - B1_Mm SINE Alu -10 137 2 6 664 273 140 0 0 chr1 10391696 10391753 -186803679 + (T)n Simple_repeat Simple_repeat 1 57 0 7 664 631 281 102 18 chr1 10391753 10392145 -186803287 - L1MB7 LINE L1 -454 5730 5306 6 664 2709 99 2 15 chr1 10392523 10392933 -186802499 + L1_Mur1 LINE L1 5397 5801 -85 7 664 3757 93 13 2 chr1 10392933 10393474 -186801958 + L1_Mus3 LINE L1 6092 6638 0 7 664 299 364 74 28 chr1 10394006 10394221 -186801211 - 7SK RNA RNA -99 232 8 7 664 249 264 27 40 chr1 10394689 10394764 -186800668 + B3A SINE B2 1 74 -124 7 664 271 261 161 121 chr1 10394764 10394938 -186800494 + B4A SINE B4 112 292 0 7 664 222 204 0 0 chr1 10394938 10394982 -186800450 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 664 281 362 16 16 chr1 10395031 10395160 -186800272 - MLT1B LTR MaLR -16 374 246 7 664 2442 179 56 17 chr1 10395651 10396117 -186799315 + RLTR17 LTR ERVK 205 688 -4 7 664 540 232 42 28 chr1 10396121 10396263 -186799169 + RMER3D-int LTR ERVK 1 144 -2698 7 664 533 162 36 9 chr1 10396286 10396398 -186799034 + RMER3D-int LTR ERVK 1750 1864 -462 7 664 1951 169 12 20 chr1 10396388 10396787 -186798645 + RMER3D-int LTR ERVK 2447 2842 0 7 664 1997 195 17 3 chr1 10396787 10397147 -186798285 + RLTR17 LTR ERVK 1 365 -327 7 664 203 0 37 0 chr1 10397263 10397290 -186798142 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 664 1150 106 39 16 chr1 10397991 10398173 -186797259 - B2_Mm2 SINE B2 -4 191 6 7 664 956 241 83 70 chr1 10398478 10398852 -186796580 - MTE2a LTR MaLR 0 379 1 7 664 5463 117 7 25 chr1 10399777 10400620 -186794812 - Lx LINE L1 0 6654 5827 7 664 183 80 0 0 chr1 10400620 10400645 -186794787 + (T)n Simple_repeat Simple_repeat 1 25 0 7 664 2056 47 100 13 chr1 10400648 10400947 -186794485 - L1_Mus1 LINE L1 0 6567 6243 7 664 19793 155 88 17 chr1 10400945 10405864 -186789568 - MusHAL1 LINE L1 -40 5846 568 7 664 423 56 0 0 chr1 10405899 10405953 -186789479 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 7 664 437 258 3 0 chr1 10405953 10406071 -186789361 - ID4_ SINE ID -26 126 8 7 664 219 69 0 0 chr1 10406129 10406158 -186789274 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 7 664 918 325 7 20 chr1 10406398 10406690 -186788742 - B4 SINE B4 -2 290 3 7 664 517 300 13 22 chr1 10407057 10407289 -186788143 - L1MA10 LINE L1 -15 6319 6090 7 664 1830 236 28 2 chr1 10407370 10407769 -186787663 - MTD LTR MaLR -1 418 10 7 664 2377 98 0 0 chr1 10407779 10408095 -186787337 - ORR1A2 LTR MaLR -8 319 4 7 664 563 197 112 24 chr1 10408128 10408253 -186787179 + B1_Mur1 SINE Alu 3 138 -11 7 664 183 42 0 0 chr1 10408253 10408277 -186787155 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 664 1271 251 29 13 chr1 10408423 10408730 -186786702 - ORR1D2 LTR MaLR 0 370 59 7 664 650 308 32 26 chr1 10408721 10408911 -186786521 - ID_B1 SINE B4 -32 192 2 7 664 28 61 0 0 chr1 10409031 10409080 -186786352 + AT_rich Low_complexity Low_complexity 1 49 0 7 664 7725 89 15 9 chr1 10409142 10411022 -186784410 - L1Md_F2 LINE L1 -12 6570 4697 7 664 818 245 78 20 chr1 10411022 10411226 -186784206 - B3 SINE B2 0 216 1 7 664 1779 296 63 89 chr1 10411226 10411376 -186784056 - L1Md_F2 LINE L1 -1428 4712 4630 7 664 306 0 0 0 chr1 10411376 10411410 -186784022 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 664 1779 296 63 89 chr1 10411410 10412222 -186783210 - L1Md_F2 LINE L1 -1511 4629 3791 7 664 35542 21 33 6 chr1 10412219 10418010 -186777422 - L1Md_A LINE L1 -1 6581 643 7 664 824 293 76 56 chr1 10418012 10418215 -186777217 - L1Md_F2 LINE L1 -2338 3802 3577 7 664 514 333 19 6 chr1 10418215 10418375 -186777057 + RSINE1 SINE B4 4 165 0 7 664 824 293 76 56 chr1 10418375 10418866 -186776566 - L1Md_F2 LINE L1 -2564 3576 3094 7 664 2188 209 56 9 chr1 10418912 10419360 -186776072 + RLTR20B3 LTR ERVK 100 568 -9 7 664 308 392 34 7 chr1 10419367 10419516 -186775916 - L1M5 LINE L1 -3401 2745 2593 7 664 560 283 18 25 chr1 10421165 10421328 -186774104 - B4 SINE B4 0 292 131 7 664 1230 296 198 22 chr1 10421751 10422518 -186772914 + Tigger6a DNA MER2_type 1 902 -181 7 664 31944 68 4 9 chr1 10422989 10428058 -186767374 + L1Md_F3 LINE L1 638 5586 -297 7 664 7397 65 20 6 chr1 10428058 10429042 -186766390 + L1Md_F3 LINE L1 5587 6584 0 7 664 4403 81 29 8 chr1 10429049 10429774 -186765658 + MusHAL1 LINE L1 184 923 -1789 7 664 326 315 0 0 chr1 10429918 10430007 -186765425 - PB1D10 SINE Alu -2 115 27 7 664 26 0 0 0 chr1 10430874 10430900 -186764532 + AT_rich Low_complexity Low_complexity 1 26 0 7 664 325 214 95 67 chr1 10431024 10431129 -186764303 + L1M2 LINE L1 2745 2852 -3291 7 664 429 103 0 0 chr1 10431212 10431280 -186764152 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 7 664 429 260 3 2 chr1 10431409 10431551 -186763881 - L1MA4A LINE L1 -381 5922 5780 7 664 276 164 0 0 chr1 10431554 10431621 -186763811 - Lx9 LINE L1 0 7644 7578 7 664 342 0 0 0 chr1 10432145 10432183 -186763249 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 7 664 2212 125 20 20 chr1 10432297 10432646 -186762786 - ORR1B1 LTR MaLR -8 386 38 7 664 280 133 22 0 chr1 10432646 10432691 -186762741 - ORR1B1-int LTR MaLR 0 1963 1918 7 664 341 215 38 0 chr1 10432858 10432937 -186762495 + ID4 SINE ID 1 82 -1 7 664 350 286 188 29 chr1 10434238 10434532 -186760900 + MTEa LTR MaLR 1 379 0 7 664 6984 70 3 5 chr1 10435064 10436381 -186759051 - L1Md_F2 LINE L1 0 6582 5270 7 664 10286 78 5 0 chr1 10436382 10437859 -186757573 + L1_Mm LINE L1 2370 3854 -2029 7 664 228 67 0 0 chr1 10438070 10438100 -186757332 + (CAT)n Simple_repeat Simple_repeat 2 31 0 7 664 434 308 30 38 chr1 10438273 10438536 -186756896 - L1MB7 LINE L1 -94 6090 5830 7 664 307 314 107 5 chr1 10438553 10438777 -186756655 - L1MB7 LINE L1 -18 6166 5920 7 664 2219 127 0 6 chr1 10438940 10439266 -186756166 - ORR1A2 LTR MaLR 0 327 4 7 664 715 356 36 10 chr1 10439275 10439664 -186755768 - Lx8 LINE L1 -180 7293 6895 7 664 625 211 163 29 chr1 10439680 10439993 -186755439 - L1MB7 LINE L1 -254 5930 5576 7 664 6801 99 31 11 chr1 10440233 10441431 -186754001 - Lx LINE L1 -1 6653 5423 7 664 375 245 10 31 chr1 10441779 10441876 -186753556 + PB1D10 SINE Alu 1 95 -22 7 664 293 119 34 0 chr1 10441923 10441982 -186753450 + GA-rich Low_complexity Low_complexity 2 62 0 7 664 215 344 16 0 chr1 10442003 10442067 -186753365 + ID2 SINE ID 9 73 -10 7 664 1327 275 98 19 chr1 10442580 10443202 -186752230 - L1MD1 LINE L1 0 6242 5572 7 664 4092 196 36 138 chr1 10443209 10444389 -186751043 - RMER1B Other Other -5 1061 2 7 664 734 257 62 100 chr1 10444677 10445179 -186750253 - L1MD1 LINE L1 -828 5318 4836 7 664 22 70 0 0 chr1 10445204 10445247 -186750185 + AT_rich Low_complexity Low_complexity 1 43 0 7 664 826 273 189 6 chr1 10445377 10445690 -186749742 + ORR1D1 LTR MaLR 5 374 0 7 664 1006 278 117 20 chr1 10445784 10446125 -186749307 + MTEa LTR MaLR 1 374 -5 7 664 2607 294 66 35 chr1 10446131 10447081 -186748351 + MTEa-int LTR MaLR 2 981 -599 7 664 1292 157 101 85 chr1 10447017 10447307 -186748125 + RMER15 LTR ERVL 242 539 -36 7 664 225 0 0 0 chr1 10447307 10447332 -186748100 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 664 1292 157 101 85 chr1 10447332 10447369 -186748063 + RMER15 LTR ERVL 540 574 -1 7 664 1740 262 50 33 chr1 10447372 10447628 -186747804 + RMER15-int LTR ERVL 3 260 -4739 7 664 315 0 0 0 chr1 10447628 10447663 -186747769 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 664 432 0 0 0 chr1 10447663 10447710 -186747722 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 664 1740 262 50 33 chr1 10447710 10447933 -186747499 + RMER15-int LTR ERVL 261 490 -4509 7 664 4952 247 45 40 chr1 10448498 10449980 -186745452 + RMER15-int LTR ERVL 2274 3761 -1238 7 664 2843 141 169 28 chr1 10449989 10450594 -186744838 + RMER6C LTR ERVK 1 690 0 7 664 933 181 0 6 chr1 10450603 10450764 -186744668 + RMER6D LTR ERVK 561 720 0 7 664 864 277 99 70 chr1 10450785 10451099 -186744333 + RMER15-int LTR ERVL 3773 4095 -904 7 664 1977 261 110 28 chr1 10451113 10451898 -186743534 + Lx8 LINE L1 6186 7034 -439 7 664 1129 172 10 5 chr1 10451900 10452093 -186743339 + RMER15 LTR ERVL 1 194 -381 7 664 411 207 241 0 chr1 10452122 10452210 -186743222 + RMER15 LTR ERVL 432 532 -43 7 664 369 0 0 0 chr1 10452210 10452251 -186743181 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 664 411 207 241 0 chr1 10452251 10452278 -186743154 + RMER15 LTR ERVL 533 574 -1 7 664 1057 252 83 78 chr1 10452281 10452655 -186742777 + MTEa LTR MaLR 1 376 -3 7 664 1796 261 147 15 chr1 10452728 10453744 -186741688 - L1MD LINE L1 -1310 4836 3687 7 664 647 133 0 17 chr1 10453885 10454000 -186741432 + (TCTG)n Simple_repeat Simple_repeat 4 116 0 7 664 436 250 153 18 chr1 10454367 10454595 -186740837 - L1MD LINE L1 -2445 3701 3443 7 664 297 260 53 27 chr1 10454635 10454710 -186740722 - B4A SINE B4 -4 288 212 7 664 868 286 9 5 chr1 10454827 10455038 -186740394 - B3 SINE B2 -3 213 2 7 664 326 315 88 26 chr1 10455038 10455528 -186739904 - L1M2 LINE L1 -1009 3607 3052 7 664 1391 116 67 4 chr1 10455528 10455753 -186739679 - Lx LINE L1 -7 6647 6409 7 664 326 322 44 35 chr1 10455753 10455999 -186739433 - L1M2 LINE L1 -3774 3071 2829 7 664 2082 126 3 6 chr1 10456089 10456401 -186739031 + RLTR10E LTR ERVK 1 311 0 7 664 3046 165 76 77 chr1 10456401 10457274 -186738158 + MMERVK10C-int LTR ERVK 1 872 -6709 7 664 1281 179 175 13 chr1 10457248 10457671 -186737761 + RMER16-int LTR ERVK 192 663 -5474 7 664 270 163 0 0 chr1 10457665 10457708 -186737724 + RMER16-int LTR ERVK 950 992 -995 7 664 394 309 27 27 chr1 10457848 10458126 -186737306 + IAP-d-int LTR ERVK 822 1061 -5481 7 664 321 175 0 0 chr1 10458154 10458211 -186737221 + IAP-d-int LTR ERVK 447 503 -6039 7 664 1359 113 121 0 chr1 10458196 10458435 -186736997 + IAP-d-int LTR ERVK 4988 5255 -1287 7 664 4136 117 15 3 chr1 10458456 10459117 -186736315 + IAPEY3-int LTR ERVK 7012 7680 0 7 664 2089 126 3 6 chr1 10459117 10459429 -186736003 + RLTR10E LTR ERVK 1 311 0 7 664 356 310 82 28 chr1 10459491 10459920 -186735512 - L1M2 LINE L1 -1993 2623 2138 7 664 3832 43 0 0 chr1 10460277 10460737 -186734695 - L1Md_T LINE L1 0 6582 6123 7 664 1306 239 151 40 chr1 10461297 10461498 -186733934 - L1MD LINE L1 -2691 3455 3238 7 664 1193 207 170 18 chr1 10461498 10461827 -186733605 - MTE2a LTR MaLR 0 379 1 7 664 1306 239 151 40 chr1 10461827 10462421 -186733011 - L1MD LINE L1 -2909 3237 2572 7 664 209 0 97 0 chr1 10462519 10462550 -186732882 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 7 664 190 339 111 43 chr1 10462550 10462667 -186732765 - MIRb SINE MIR -58 210 86 7 664 1228 325 80 39 chr1 10462804 10463316 -186732116 + MLT1F2 LTR MaLR 3 535 -25 7 664 594 148 74 0 chr1 10463693 10463801 -186731631 - PB1D9 SINE Alu -1 119 4 7 664 292 194 75 0 chr1 10464301 10464368 -186731064 - ID4 SINE ID -9 74 3 7 664 7760 87 2 4 chr1 10464667 10466553 -186728879 - L1_Mus2 LINE L1 -2 6564 4683 7 664 315 0 0 0 chr1 10466751 10466786 -186728646 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 664 193 286 56 14 chr1 10467802 10467873 -186727559 - L2b LINE L2 -27 3399 3289 7 664 369 0 0 0 chr1 10471557 10471598 -186723834 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 664 186 103 0 0 chr1 10472048 10472077 -186723355 + (TATG)n Simple_repeat Simple_repeat 4 32 0 7 664 459 92 0 0 chr1 10472528 10472593 -186722839 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 664 1691 67 0 13 chr1 10472928 10473154 -186722278 + L1Md_F2 LINE L1 6348 6570 -12 8 664 820 227 0 84 chr1 10473564 10473790 -186721642 - B3 SINE B2 -8 208 2 8 664 278 302 87 87 chr1 10474487 10474698 -186720734 - MIRb SINE MIR -22 246 28 8 664 453 158 0 0 chr1 10476175 10476276 -186719156 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 664 618 266 44 0 chr1 10476280 10476438 -186718994 - RSINE1 SINE B4 0 165 1 8 664 424 228 32 31 chr1 10477685 10477792 -186717640 - B1F SINE Alu -28 121 17 8 664 378 283 38 0 chr1 10477699 10477805 -186717627 - ID_B1 SINE B4 -37 187 78 8 664 277 333 41 10 chr1 10480102 10480199 -186715233 + ID_B1 SINE B4 68 167 -57 8 664 420 194 87 48 chr1 10480117 10480220 -186715212 + PB1D10 SINE Alu 9 115 -2 8 664 486 0 0 0 chr1 10480574 10480628 -186714804 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 664 405 0 0 0 chr1 10480628 10480672 -186714760 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 664 312 280 96 98 chr1 10480704 10481060 -186714372 - L1_Rod LINE L1 -10 5837 5483 8 664 266 220 16 38 chr1 10481060 10481183 -186714249 + L1MA5A LINE L1 5265 5380 -917 8 664 422 298 170 8 chr1 10481183 10481724 -186713708 + L1MA5A LINE L1 5641 6282 -18 8 664 182 419 15 0 chr1 10481991 10482127 -186713305 + MIR SINE MIR 31 168 -94 8 664 436 116 14 0 chr1 10482133 10482202 -186713230 + ORR1B1 LTR MaLR 1 70 -324 8 664 1104 95 0 0 chr1 10482226 10482373 -186713059 - B1_Mus1 SINE Alu 0 148 2 8 664 3786 130 85 3 chr1 10482373 10482975 -186712457 - RMER19A LTR ERVK -18 719 67 8 664 1010 142 32 30 chr1 10482970 10483189 -186712243 + ORR1B1 LTR MaLR 137 394 0 8 664 389 315 24 0 chr1 10483312 10483439 -186711993 + MIR SINE MIR 92 221 -41 8 664 483 18 0 0 chr1 10483845 10483901 -186711531 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 664 789 242 39 0 chr1 10483912 10484065 -186711367 - B3A SINE B2 -38 160 2 8 664 646 263 90 86 chr1 10484065 10484294 -186711138 - B4A SINE B4 -62 230 1 8 664 263 373 89 12 chr1 10484705 10484873 -186710559 - MLT1C LTR MaLR -107 360 180 8 664 1043 289 23 41 chr1 10485182 10485625 -186709807 - Lx9 LINE L1 -278 7366 6932 8 10 812 223 16 11 chr1 10485690 10485876 -186709556 + B2_Mm2 SINE B2 1 187 -8 8 665 3570 57 2 2 chr1 10485980 10486435 -186708997 - L1Md_F3 LINE L1 -1 6583 6129 8 665 6151 51 11 0 chr1 10486435 10487295 -186708137 + L1Md_F3 LINE L1 5063 5928 -656 8 665 282 95 0 0 chr1 10487357 10487399 -186708033 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 665 280 178 27 0 chr1 10487690 10487763 -186707669 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 665 260 164 62 62 chr1 10488152 10488217 -186707215 - MLT1A1 LTR MaLR -30 378 314 8 665 229 339 88 18 chr1 10488423 10488537 -186706895 - MLT1A1 LTR MaLR -239 126 5 8 665 471 222 84 17 chr1 10488819 10488938 -186706494 - B1_Mur2 SINE Alu 0 149 23 8 665 246 316 98 70 chr1 10488821 10488964 -186706468 - B4 SINE B4 -69 223 77 8 665 377 314 171 25 chr1 10488993 10489391 -186706041 - MER90 LTR ERV1 -11 564 108 8 665 345 159 24 18 chr1 10489869 10489954 -186705478 + B1F SINE Alu 46 149 0 8 665 2632 153 23 33 chr1 10490064 10490543 -186704889 + Lx2B LINE L1 6523 6996 -4 8 665 977 156 0 11 chr1 10490587 10490769 -186704663 + GA-rich Low_complexity Low_complexity 1 180 0 8 665 251 325 0 24 chr1 10491128 10491213 -186704219 + MIR3 SINE MIR 104 186 -22 8 665 217 309 155 0 chr1 10491680 10491777 -186703655 - L2b LINE L2 0 3375 3264 8 665 294 183 133 0 chr1 10492000 10492060 -186703372 + MER92B LTR ERV1 9 76 -478 8 665 434 308 189 22 chr1 10492073 10492385 -186703047 + MER92B LTR ERV1 115 478 -158 8 665 659 194 47 64 chr1 10492575 10492746 -186702686 - L1_Mur2 LINE L1 -164 5713 5546 8 665 3370 66 0 14 chr1 10493008 10493454 -186701978 + L1Md_F2 LINE L1 6143 6582 0 8 665 573 308 176 44 chr1 10494739 10495319 -186700113 + L1M5 LINE L1 2687 3335 -2808 8 665 222 37 0 0 chr1 10496291 10496318 -186699114 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 665 638 269 102 48 chr1 10496326 10496577 -186698855 - B4A SINE B4 -18 274 3 8 665 1141 45 0 54 chr1 10496643 10496829 -186698603 + (TTTCC)n Simple_repeat Simple_repeat 3 178 0 8 665 827 141 32 32 chr1 10496829 10497080 -186698352 + CT-rich Low_complexity Low_complexity 1 251 0 8 665 484 333 21 0 chr1 10497095 10497239 -186698193 - ID_B1 SINE B4 -1 223 77 8 665 516 233 167 19 chr1 10497469 10497631 -186697801 + B3 SINE B2 31 216 0 8 665 760 278 6 0 chr1 10499004 10499166 -186696266 - RSINE1 SINE B4 -2 163 1 8 665 396 0 0 0 chr1 10499252 10499296 -186696136 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 665 306 0 0 0 chr1 10499296 10499329 -186696103 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 665 397 293 0 8 chr1 10499876 10500000 -186695432 - Arthur1A DNA Tip100 -2 175 53 8 665 380 235 139 6 chr1 10500284 10500464 -186694968 - L1M3 LINE L1 -816 5484 5281 1 665 233 311 0 16 chr1 10500482 10500544 -186694888 - B3A SINE B2 -6 192 132 2 665 655 235 55 5 chr1 10500600 10500801 -186694631 + L1MA4 LINE L1 6066 6276 -24 3 665 498 239 76 19 chr1 10501027 10501389 -186694043 - L1M3 LINE L1 -596 5572 5183 4 665 215 333 0 0 chr1 10501475 10501649 -186693783 + (CATCC)n Simple_repeat Simple_repeat 5 178 0 5 665 230 247 47 0 chr1 10501757 10501842 -186693590 - L1M3 LINE L1 -926 5214 5126 4 665 30 27 0 0 chr1 10501842 10501879 -186693553 + AT_rich Low_complexity Low_complexity 1 37 0 6 665 970 75 68 0 chr1 10501883 10502029 -186693403 - L1_Mus2 LINE L1 -1 6565 6410 7 665 293 221 441 22 chr1 10502042 10502176 -186693256 - B3A SINE B2 -6 210 21 8 665 3284 33 18 5 chr1 10502176 10502567 -186692865 + MTA_Mm LTR MaLR 1 396 0 9 665 30 27 0 0 chr1 10502597 10502634 -186692798 + AT_rich Low_complexity Low_complexity 1 37 0 1 665 6689 71 33 6 chr1 10502991 10503895 -186691537 + RLTR13B3 LTR ERVK 1 929 0 1 665 464 264 71 19 chr1 10503964 10504176 -186691256 - L1MD2 LINE L1 -459 5900 5678 1 665 26 50 0 0 chr1 10504239 10504279 -186691153 + AT_rich Low_complexity Low_complexity 1 40 0 1 665 1739 233 49 28 chr1 10504598 10505367 -186690065 + L1_Mus2 LINE L1 250 1050 -5588 1 665 12333 102 41 6 chr1 10505369 10508058 -186687374 + L1_Mus2 LINE L1 3793 6565 -1 1 665 514 254 53 0 chr1 10508164 10508333 -186687099 - L1_Mur3 LINE L1 -615 5265 5088 1 665 654 338 102 32 chr1 10509817 10509929 -186685503 - MLT2B3 LTR ERVL -60 610 487 1 665 6271 115 30 21 chr1 10509929 10510904 -186684528 - RLTR13C1 LTR ERVK 0 983 1 1 665 654 281 142 34 chr1 10510904 10511317 -186684115 - MLT2B3 LTR ERVL -229 488 119 1 665 966 329 99 53 chr1 10511375 10511973 -186683459 + MER21B LTR ERV1 94 718 -145 1 665 231 373 38 113 chr1 10512042 10512308 -186683124 + MLT1I LTR MaLR 55 300 -111 1 665 252 306 20 0 chr1 10513005 10513103 -186682329 + (CAGAGA)n Simple_repeat Simple_repeat 4 103 0 2 665 274 270 40 0 chr1 10513492 10513566 -186681866 + Tigger13a DNA MER2_type 151 227 -544 2 665 387 308 178 45 chr1 10513622 10513908 -186681524 + LTR50 LTR ERVL 275 598 -197 2 665 852 287 141 101 chr1 10514230 10514771 -186680661 + Tigger7 DNA MER2_type 26 542 -8 2 665 180 314 157 0 chr1 10514825 10514895 -186680537 + L2c LINE L2 3038 3118 -269 2 665 360 0 0 0 chr1 10516721 10516761 -186678671 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 665 903 19 0 0 chr1 10517890 10517995 -186677437 + (TC)n Simple_repeat Simple_repeat 2 106 0 2 665 1761 219 77 17 chr1 10517997 10518401 -186677031 - Lx5 LINE L1 -7 7043 6616 2 665 252 303 0 38 chr1 10518570 10518649 -186676783 + ID4_ SINE ID 2 77 -6 2 665 221 301 11 78 chr1 10518649 10518660 -186676772 + ID SINE ID 2 85 -139 2 665 36777 48 3 2 chr1 10519055 10525443 -186669989 - L1Md_F2 LINE L1 -3 6579 232 3 665 1141 255 119 18 chr1 10525468 10525863 -186669569 - Lx8 LINE L1 -5 7468 7034 3 665 386 273 117 11 chr1 10526078 10526303 -186669129 + L1MC4a LINE L1 7477 7753 -289 3 665 351 0 0 0 chr1 10526410 10526449 -186668983 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 665 232 276 0 0 chr1 10526942 10527000 -186668432 - RMER15 LTR ERVL -115 460 403 3 665 344 335 124 41 chr1 10527000 10527176 -186668256 - Lx8 LINE L1 -207 7266 7064 3 665 2126 154 65 3 chr1 10527176 10527547 -186667885 + ORR1B1 LTR MaLR 1 394 0 3 665 344 335 124 41 chr1 10527547 10527588 -186667844 - Lx8 LINE L1 -410 7063 7031 3 665 465 19 0 0 chr1 10527593 10527647 -186667785 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 665 34148 71 4 4 chr1 10527655 10533787 -186661645 - L1Md_F3 LINE L1 -15 6569 439 3 665 1971 283 58 14 chr1 10533788 10534409 -186661023 - Lx8 LINE L1 -445 7028 6381 3 665 890 257 94 24 chr1 10534695 10534982 -186660450 + MLT1A0 LTR MaLR 1 307 -58 3 665 14601 126 21 12 chr1 10535031 10536460 -186658972 + L1VL4 LINE L1 667 2084 -1830 4 665 192 40 0 0 chr1 10536460 10536485 -186658947 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 665 14601 141 116 2 chr1 10536485 10539291 -186656141 + L1VL4 LINE L1 2085 5733 -153 4 665 7010 108 1 7 chr1 10539287 10540564 -186654868 + L1_Mus3 LINE L1 5359 6631 -7 4 665 249 33 0 0 chr1 10540676 10540706 -186654726 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 665 903 129 7 39 chr1 10540706 10540849 -186654583 - B1_Mur4 SINE Alu -7 143 3 4 665 534 70 0 0 chr1 10540923 10540994 -186654438 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 665 526 306 218 14 chr1 10543150 10543435 -186651997 + ORR1E LTR MaLR 1 343 -16 4 665 402 21 0 0 chr1 10545239 10545286 -186650146 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 665 744 122 0 0 chr1 10545634 10545741 -186649691 - U6 snRNA snRNA 0 107 1 4 665 626 216 58 13 chr1 10545935 10546090 -186649342 + Lx9 LINE L1 7075 7236 -408 4 665 1834 168 143 13 chr1 10546177 10546711 -186648721 + L1VL2 LINE L1 443 1065 -2550 5 665 2263 132 5 0 chr1 10546706 10547100 -186648332 + L1VL2 LINE L1 2851 3246 -369 5 665 8779 158 21 37 chr1 10547092 10549123 -186646309 + Lx2B LINE L1 4120 6155 -845 5 665 1465 160 4 22 chr1 10549123 10549391 -186646041 + Lx2B LINE L1 6735 6997 0 5 665 746 236 103 53 chr1 10549392 10549772 -186645660 + Lx9 LINE L1 7246 7644 0 4 665 897 306 55 57 chr1 10549928 10550295 -186645137 + MTD LTR MaLR 1 366 -53 5 665 498 33 0 0 chr1 10550296 10550356 -186645076 + (CAG)n Simple_repeat Simple_repeat 1 60 0 5 665 188 35 35 0 chr1 10550368 10550397 -186645035 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 665 583 333 126 34 chr1 10550397 10550835 -186644597 - Arthur1 DNA Tip100 -2894 1053 576 5 665 180 0 0 0 chr1 10551910 10551930 -186643502 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 5 665 587 274 120 19 chr1 10552096 10552405 -186643027 - MER58B DNA MER1_type 0 341 2 5 665 271 250 14 14 chr1 10552425 10552494 -186642938 + ID4_ SINE ID 4 72 -11 5 665 1201 275 21 23 chr1 10552798 10553182 -186642250 + Lx8 LINE L1 7089 7471 -2 5 665 819 255 6 36 chr1 10553647 10553869 -186641563 - B3A SINE B2 -2 214 1 6 665 335 341 62 0 chr1 10553871 10554000 -186641432 - B1F1 SINE Alu -12 137 1 6 665 896 199 113 0 chr1 10554522 10554785 -186640647 + MER58B DNA MER1_type 18 339 -2 6 665 367 194 20 0 chr1 10555532 10555630 -186639802 - Lx9 LINE L1 -22 7622 7523 6 665 582 152 123 25 chr1 10556421 10556557 -186638875 - B1_Mur2 SINE Alu 0 149 2 6 665 285 266 80 45 chr1 10557466 10557667 -186637765 - L1MC4a LINE L1 -394 7648 7441 6 665 715 261 76 5 chr1 10557668 10557853 -186637579 + B3 SINE B2 15 212 -4 6 665 350 268 127 35 chr1 10557854 10558051 -186637381 - L1MC4a LINE L1 -431 7451 7237 6 665 472 198 47 0 chr1 10558102 10558208 -186637224 + RLTR30 LTR ERV1 263 373 -6 6 665 235 211 0 0 chr1 10558307 10558364 -186637068 - L1MEf LINE L1 -5257 943 887 6 665 1128 112 209 0 chr1 10559032 10559219 -186636213 - URR1A DNA MER1_type 0 226 1 6 665 901 161 0 0 chr1 10559533 10559670 -186635762 - B1_Mus1 SINE Alu -6 142 6 7 665 21 0 0 0 chr1 10559702 10559723 -186635709 + AT_rich Low_complexity Low_complexity 1 21 0 7 665 275 355 34 13 chr1 10559856 10560093 -186635339 - Lx8 LINE L1 -2 7471 7230 7 665 29 28 0 0 chr1 10560240 10560276 -186635156 + AT_rich Low_complexity Low_complexity 1 36 0 7 665 249 149 20 60 chr1 10560349 10560399 -186635033 - B2_Mm2 SINE B2 -137 58 11 7 665 458 247 173 6 chr1 10560442 10560621 -186634811 - B3 SINE B2 -5 211 3 7 665 274 290 76 53 chr1 10560623 10560754 -186634678 - Charlie21a DNA MER1_type -795 418 285 7 665 729 299 88 48 chr1 10560974 10561269 -186634163 + MER74A LTR ERVL 108 414 -144 7 665 475 304 0 59 chr1 10561784 10561903 -186633529 - B1_Mur3 SINE Alu -8 112 1 7 665 382 328 120 15 chr1 10561903 10561917 -186633515 - B4 SINE B4 -74 218 72 7 665 1077 103 0 0 chr1 10562084 10562230 -186633202 + B1_Mus1 SINE Alu 2 147 -1 8 665 252 0 0 0 chr1 10562230 10562258 -186633174 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 665 21 0 0 0 chr1 10562258 10562279 -186633153 + AT_rich Low_complexity Low_complexity 1 21 0 8 665 262 277 73 30 chr1 10562297 10562461 -186632971 + L1MC4a LINE L1 5777 5947 -1935 8 665 245 244 33 0 chr1 10562463 10562553 -186632879 + (TA)n Simple_repeat Simple_repeat 2 94 0 8 665 2041 168 80 0 chr1 10562713 10563065 -186632367 - MTC LTR MaLR -41 380 1 8 665 12586 89 23 4 chr1 10563456 10566234 -186629198 + L1VL4 LINE L1 1 2830 -729 8 665 959 156 6 0 chr1 10566234 10566413 -186629019 + CT-rich Low_complexity Low_complexity 1 180 0 8 665 243 0 0 0 chr1 10566413 10566440 -186628992 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8 665 718 284 193 11 chr1 10566456 10566741 -186628691 + MTC LTR MaLR 33 369 -52 8 665 309 305 10 10 chr1 10568232 10568328 -186627104 + L2a LINE L2 3322 3417 -9 9 665 820 207 9 102 chr1 10568642 10568857 -186626575 - B3A SINE B2 0 198 4 9 665 4353 57 4 0 chr1 10568893 10569434 -186625998 - L1_Mus1 LINE L1 0 6567 6025 9 665 723 52 0 0 chr1 10569434 10569530 -186625902 + L1_Mus1 LINE L1 5925 6020 -547 9 665 352 369 81 8 chr1 10570888 10571088 -186624344 - MLT1J LTR MaLR -260 252 1 9 665 201 328 102 42 chr1 10572135 10572253 -186623179 + MIRb SINE MIR 133 257 -11 9 665 1183 220 172 19 chr1 10572577 10572897 -186622535 - MTD LTR MaLR 0 419 51 9 665 341 306 66 8 chr1 10572897 10573019 -186622413 + B1_Mur3 SINE Alu 21 149 0 9 665 265 293 24 12 chr1 10574225 10574308 -186621124 - L2c LINE L2 -2 3385 3302 9 665 723 161 13 40 chr1 10574315 10574355 -186621077 + RMER17C LTR ERVK 1 40 -370 9 665 3421 28 5 0 chr1 10574355 10574749 -186620683 + MTA_Mm LTR MaLR 1 396 0 9 665 723 161 13 40 chr1 10574749 10574857 -186620575 + RMER17C LTR ERVK 41 145 -265 9 665 536 44 0 0 chr1 10574855 10574923 -186620509 + B1_Mm SINE Alu 80 147 0 1 665 3859 126 143 20 chr1 10574950 10576183 -186619249 + RMER17C-int LTR ERVK 1388 2876 -362 9 665 492 18 0 0 chr1 10576183 10576240 -186619192 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 665 3859 116 127 19 chr1 10576240 10576567 -186618865 + RMER17C-int LTR ERVK 2877 3229 -9 9 665 1725 151 120 24 chr1 10576575 10576759 -186618673 + RMER17C LTR ERVK 1 211 -199 9 665 612 50 0 0 chr1 10576759 10576839 -186618593 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 665 1725 151 120 24 chr1 10576839 10577028 -186618404 + RMER17C LTR ERVK 212 410 0 9 665 344 312 0 46 chr1 10578306 10578437 -186616995 + PB1 SINE Alu 1 125 -2 1 665 405 0 0 0 chr1 10578661 10578706 -186616726 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 665 310 293 94 8 chr1 10578851 10578968 -186616464 + MLT1H1 LTR MaLR 4 130 -425 1 665 989 350 106 12 chr1 10579808 10580306 -186615126 - MLT1E3 LTR MaLR -79 545 1 1 665 267 305 46 0 chr1 10580334 10580425 -186615007 + B1F SINE Alu 13 104 -13 1 665 510 122 35 28 chr1 10580463 10580606 -186614826 + GA-rich Low_complexity Low_complexity 4 147 0 1 665 195 42 0 0 chr1 10581067 10581091 -186614341 + (CCTAT)n Simple_repeat Simple_repeat 5 28 0 1 665 587 298 245 51 chr1 10581705 10582233 -186613199 - MLT1E3 LTR MaLR -7 646 1 1 665 470 260 15 54 chr1 10582584 10582714 -186612718 + MER68 LTR ERVL 1 125 -438 1 665 755 300 46 72 chr1 10582684 10582989 -186612443 + MER68 LTR ERVL 231 527 -36 1 665 3011 164 28 53 chr1 10583146 10583725 -186611707 + RMER15 LTR ERVL 12 575 0 1 665 2832 58 44 10 chr1 10583734 10584117 -186611315 - MTA_Mm LTR MaLR 0 396 1 1 665 243 316 66 0 chr1 10584269 10584345 -186611087 - ID4_ SINE ID 0 83 3 1 665 510 17 0 0 chr1 10585932 10585991 -186609441 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 665 183 80 0 0 chr1 10586753 10586778 -186608654 + (T)n Simple_repeat Simple_repeat 1 25 0 1 665 288 0 0 0 chr1 10587276 10587308 -186608124 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 665 3123 96 46 44 chr1 10587348 10587849 -186607583 - Lx LINE L1 -6 6648 6147 1 665 433 311 46 52 chr1 10588434 10588767 -186606665 + MLT1A1 LTR MaLR 41 408 0 1 665 234 383 24 68 chr1 10588917 10589169 -186606263 + MLT1L LTR MaLR 360 600 -10 1 665 26 0 0 0 chr1 10589494 10589520 -186605912 + AT_rich Low_complexity Low_complexity 1 26 0 1 665 211 328 0 16 chr1 10589930 10589992 -186605440 + L2a LINE L2 3365 3425 -1 1 665 252 100 0 0 chr1 10590671 10590711 -186604721 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 665 307 382 59 67 chr1 10590903 10591053 -186604379 + L1MEd LINE L1 299 447 -5672 1 665 2315 163 37 5 chr1 10591053 10591461 -186603971 - MTC LTR MaLR 0 421 1 1 665 307 382 59 67 chr1 10591461 10591565 -186603867 + L1MEd LINE L1 448 551 -5568 1 665 234 330 17 43 chr1 10591773 10591890 -186603542 + MTE-int LTR MaLR 1162 1275 -234 1 665 762 42 0 0 chr1 10592026 10592122 -186603310 - L1_Mus1 LINE L1 -189 6378 6283 1 665 467 40 0 51 chr1 10592122 10592201 -186603231 + L1Md_F2 LINE L1 6506 6580 -2 1 665 307 349 20 7 chr1 10592203 10592350 -186603082 + MTE-int LTR MaLR 1393 1541 -39 1 665 400 303 48 0 chr1 10593001 10593142 -186602290 + Charlie2a DNA MER1_type 1487 1634 -1227 1 665 259 235 60 24 chr1 10593142 10593225 -186602207 - ORR1E LTR MaLR 0 379 294 1 665 276 255 0 18 chr1 10593360 10593416 -186602016 - ORR1E LTR MaLR -36 323 269 1 665 943 212 63 62 chr1 10593630 10594024 -186601408 + RLTRETN_Mm LTR ERVK 1 393 0 1 665 258 331 24 48 chr1 10594303 10594468 -186600964 - ORR1E LTR MaLR -111 248 88 1 665 264 336 18 46 chr1 10594522 10594631 -186600801 - ORR1E LTR MaLR -271 108 3 1 665 378 295 0 10 chr1 10594760 10594856 -186600576 - MTE-int LTR MaLR -124 1456 1362 1 665 462 323 45 30 chr1 10594874 10595008 -186600424 + RSINE1 SINE B4 2 137 -28 1 665 1269 330 175 48 chr1 10595025 10595865 -186599567 - MTE-int LTR MaLR -228 1352 406 1 665 353 339 76 80 chr1 10595900 10596176 -186599256 - ORR1D1 LTR MaLR -14 360 86 1 665 319 254 45 17 chr1 10596240 10596352 -186599080 - MLT2B2 LTR ERVL -484 117 1 1 665 22 0 0 0 chr1 10596363 10596385 -186599047 + AT_rich Low_complexity Low_complexity 1 22 0 1 665 253 355 191 18 chr1 10596984 10597423 -186598009 - L2 LINE L2 -339 3080 2566 1 665 532 46 35 15 chr1 10597425 10597521 -186597911 + B2_Mm1t SINE B2 1 178 -15 1 665 1453 50 22 0 chr1 10597521 10597701 -186597731 + B2_Mm1t SINE B2 2 185 -8 1 665 235 362 45 13 chr1 10597814 10597968 -186597464 - L2 LINE L2 -962 2457 2299 1 665 2473 231 48 41 chr1 10598061 10599764 -186595668 + Lx5 LINE L1 5463 7460 0 1 665 30 45 0 0 chr1 10599786 10599830 -186595602 + AT_rich Low_complexity Low_complexity 1 44 0 1 665 345 47 0 0 chr1 10599851 10599894 -186595538 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 665 1499 174 92 0 chr1 10600804 10601108 -186594324 + IAPEY3_LTR LTR ERVK 1 332 0 1 665 519 17 0 0 chr1 10603068 10603128 -186592304 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 665 474 18 0 0 chr1 10603128 10603182 -186592250 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 665 1443 160 4 21 chr1 10603820 10604063 -186591369 - RLTR42 LTR ERVK 0 239 1 1 665 5256 157 131 34 chr1 10604097 10605859 -186589573 - RLTR42-int LTR ERVK -28 5494 3557 1 665 1209 48 0 0 chr1 10605859 10606006 -186589426 - B1_Mm SINE Alu 0 147 1 1 665 5256 156 93 51 chr1 10606006 10606225 -186589207 - RLTR42-int LTR ERVK -1966 3556 3331 1 665 6723 169 39 52 chr1 10606224 10607788 -186587644 - RLTR42-int LTR ERVK -2540 2982 1439 1 665 1107 126 28 0 chr1 10607808 10607990 -186587442 - RLTR42-int LTR ERVK -4066 1456 1270 1 665 2847 127 44 24 chr1 10608227 10608726 -186586706 + Lx LINE L1 6144 6652 -2 1 665 1954 127 43 23 chr1 10608743 10609089 -186586343 + Lx3B LINE L1 6604 6956 -17 1 665 30 0 0 0 chr1 10609093 10609123 -186586309 + AT_rich Low_complexity Low_complexity 1 30 0 1 665 421 223 77 43 chr1 10609129 10609246 -186586186 + RLTR14 LTR ERV1 262 382 0 1 665 23 33 0 0 chr1 10609246 10609276 -186586156 + AT_rich Low_complexity Low_complexity 1 30 0 1 665 295 388 40 7 chr1 10609468 10609616 -186585816 + MTE2a LTR MaLR 18 170 -251 1 665 270 89 18 0 chr1 10609634 10609690 -186585742 + Lx LINE L1 6598 6654 0 1 665 203 196 0 21 chr1 10609691 10609738 -186585694 + A-rich Low_complexity Low_complexity 2 47 0 1 665 522 228 38 38 chr1 10609790 10609922 -186585510 + MTE2a LTR MaLR 240 371 -8 1 665 359 274 37 28 chr1 10609950 10610059 -186585373 - MLT1A1 LTR MaLR -293 115 6 1 665 430 332 211 8 chr1 10611896 10612382 -186583050 - L2a LINE L2 -18 3408 2817 1 665 1625 201 258 4 chr1 10612854 10613319 -186582113 - RMER4B LTR ERVK 0 585 3 1 665 7495 73 2 10 chr1 10614204 10616011 -186579421 + L1_Mus1 LINE L1 4766 6564 -3 1 665 567 179 80 0 chr1 10616041 10616153 -186579279 + B1_Mur4 SINE Alu 7 127 -23 1 665 533 123 9 0 chr1 10616154 10616260 -186579172 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 1 666 222 364 63 9 chr1 10616837 10616948 -186578484 + MIRm SINE MIR 28 144 -132 1 666 742 349 14 14 chr1 10617024 10617236 -186578196 + ID_B1 SINE B4 7 218 -6 1 666 1697 55 50 5 chr1 10617291 10617512 -186577920 - L1_Mus1 LINE L1 0 6567 6337 1 666 252 0 0 0 chr1 10619723 10619751 -186575681 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 666 358 187 22 0 chr1 10619874 10619965 -186575467 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 666 3485 125 228 51 chr1 10619965 10620453 -186574979 + RMER17A2 LTR ERVK 1 570 -336 1 666 486 0 0 0 chr1 10620453 10620507 -186574925 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 1 666 3485 125 228 51 chr1 10620507 10620778 -186574654 + RMER17A2 LTR ERVK 571 894 -12 1 666 260 273 0 29 chr1 10620877 10620945 -186574487 - ID4 SINE ID -14 69 4 1 666 269 254 0 0 chr1 10621261 10621316 -186574116 - ID SINE ID -166 58 4 1 666 667 307 113 30 chr1 10621964 10622266 -186573166 - MER44A DNA MER2_type -11 328 2 1 666 400 276 27 54 chr1 10623381 10623492 -186571940 - B1F SINE Alu 0 149 42 1 666 187 314 0 0 chr1 10623611 10623662 -186571770 + L2a LINE L2 3367 3417 -9 1 666 316 295 77 33 chr1 10624195 10624377 -186571055 - Charlie2b DNA MER1_type -1 2781 2592 1 666 275 244 37 47 chr1 10625311 10625418 -186570014 - L1MA5 LINE L1 -54 6246 6138 1 666 23 0 0 0 chr1 10627764 10627787 -186567645 + AT_rich Low_complexity Low_complexity 1 23 0 1 666 303 218 12 37 chr1 10628413 10628494 -186566938 + CT-rich Low_complexity Low_complexity 5 83 0 1 666 232 258 50 20 chr1 10628652 10628751 -186566681 + L1M5 LINE L1 4941 5042 -1104 1 666 577 286 137 20 chr1 10628925 10629322 -186566110 + L1M5 LINE L1 5308 5744 -418 1 666 576 189 205 0 chr1 10629790 10629912 -186565520 + B1_Mm SINE Alu 1 147 0 1 666 21 36 0 0 chr1 10630031 10630059 -186565373 + AT_rich Low_complexity Low_complexity 1 28 0 1 666 198 0 0 0 chr1 10630913 10630935 -186564497 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 666 321 26 0 0 chr1 10630935 10630972 -186564460 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 666 510 17 0 0 chr1 10630972 10631030 -186564402 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 666 290 249 156 41 chr1 10631291 10631673 -186563759 - L1M5 LINE L1 -738 5441 5001 1 666 2644 218 55 85 chr1 10631776 10632786 -186562646 + L1_Rod LINE L1 4758 5737 -110 1 666 1289 160 5 0 chr1 10632826 10633045 -186562387 + Lx9 LINE L1 6782 7001 -643 1 666 497 281 41 48 chr1 10633051 10633197 -186562235 + MTE-int LTR MaLR 1361 1505 -75 1 666 1014 235 7 127 chr1 10633197 10633524 -186561908 + RMER19C LTR ERVK 1 496 -406 1 666 1254 283 20 76 chr1 10633556 10633965 -186561467 + RMER19C LTR ERVK 214 599 -12 1 666 649 278 39 32 chr1 10634291 10634447 -186560985 + B3A SINE B2 1 157 -41 1 666 351 98 0 0 chr1 10634448 10634509 -186560923 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 666 501 17 0 0 chr1 10634509 10634567 -186560865 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 666 575 37 25 0 chr1 10636967 10637048 -186558384 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1 666 2651 93 89 10 chr1 10637137 10637540 -186557892 + RLTR9B LTR ERVK 1 435 -2 1 666 1461 340 32 34 chr1 10637786 10638592 -186556840 + RodERV21-int LTR ERV1 4082 4886 -105 1 666 197 306 50 20 chr1 10639205 10639305 -186556127 + MIRb SINE MIR 26 128 -140 1 666 283 364 77 43 chr1 10639518 10639725 -186555707 + MLT1A1 LTR MaLR 187 400 -8 1 666 216 97 0 0 chr1 10640181 10640212 -186555220 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 666 189 121 0 0 chr1 10640233 10640266 -186555166 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1 666 213 65 0 0 chr1 10640588 10640619 -186554813 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 666 567 0 0 0 chr1 10640629 10640692 -186554740 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 666 1332 136 114 115 chr1 10640730 10641132 -186554300 + RMER16 LTR ERVK 1 479 -54 2 666 5703 106 11 18 chr1 10641144 10641990 -186553442 - L1_Mus4 LINE L1 -4 6632 5793 2 666 1198 48 0 0 chr1 10641992 10642137 -186553295 + B1_Mm SINE Alu 2 146 -1 2 666 307 113 14 14 chr1 10642138 10642210 -186553222 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 2 666 504 58 0 0 chr1 10642212 10642281 -186553151 - L1Md_F2 LINE L1 -776 5806 5738 2 666 8828 127 22 7 chr1 10642280 10643772 -186551660 + L1Md_F2 LINE L1 4227 5741 -142 2 666 396 123 31 0 chr1 10643772 10643837 -186551595 + RMER16 LTR ERVK 462 528 -5 2 666 214 284 86 86 chr1 10644020 10644091 -186551341 + ID4 SINE ID 3 75 -8 2 666 309 26 0 0 chr1 10644091 10644129 -186551303 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 666 1799 150 3 54 chr1 10644164 10644495 -186550937 - Lx4A LINE L1 -1 7057 6744 2 666 45 19 0 0 chr1 10644574 10644626 -186550806 + AT_rich Low_complexity Low_complexity 1 52 0 2 666 21 0 0 0 chr1 10644816 10644837 -186550595 + AT_rich Low_complexity Low_complexity 1 21 0 2 666 1670 185 21 42 chr1 10644842 10645301 -186550131 - RMER17C LTR ERVK -519 439 16 2 666 388 293 96 16 chr1 10645309 10645434 -186549998 - MER2 DNA MER2_type -207 138 4 2 666 248 325 72 36 chr1 10645949 10646032 -186549400 + MLT1J2 LTR MaLR 231 316 -132 2 666 3210 190 36 27 chr1 10646361 10646995 -186548437 - RLTR26 LTR ERVK -2 640 1 2 666 18714 164 25 119 chr1 10647021 10648560 -186546872 + L1VL4 LINE L1 580 2054 -3832 2 666 2014 130 9 58 chr1 10648560 10648904 -186546528 + ORR1A2 LTR MaLR 1 327 0 2 666 18714 165 17 131 chr1 10648904 10650094 -186545338 + L1VL4 LINE L1 2055 2895 -2991 2 666 212 0 36 0 chr1 10650094 10650122 -186545310 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 666 18714 165 17 131 chr1 10650122 10653366 -186542066 + L1VL4 LINE L1 2896 5886 0 2 666 2910 103 0 2 chr1 10653369 10653827 -186541605 - L1_Mm LINE L1 -1890 3993 3537 2 666 5835 48 7 0 chr1 10653827 10654534 -186540898 + L1_Mus1 LINE L1 5854 6565 -2 2 666 5571 172 19 6 chr1 10654556 10655542 -186539890 + Lx2 LINE L1 5998 6996 -1 2 666 1081 326 46 22 chr1 10656534 10656995 -186538437 + ERVL-B4-int LTR ERVL 4078 4549 -1165 2 666 1124 277 59 33 chr1 10657065 10657610 -186537822 + L1M2 LINE L1 2092 2650 -4199 2 666 357 282 38 11 chr1 10657804 10657987 -186537445 + L1M2 LINE L1 2957 3144 -3701 2 666 258 56 0 0 chr1 10658195 10658231 -186537201 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 666 945 267 69 17 chr1 10659074 10659436 -186535996 + L1_Mur3 LINE L1 1595 1975 -3905 2 666 611 295 102 50 chr1 10659526 10659756 -186535676 - RMER21B LTR ERV1 -258 689 328 2 666 243 0 0 0 chr1 10659756 10659783 -186535649 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 666 611 328 87 55 chr1 10659783 10659848 -186535584 - RMER21B LTR ERV1 -515 327 312 2 666 449 238 240 19 chr1 10659850 10660004 -186535428 - RMER21B LTR ERV1 -654 188 1 2 666 2627 266 36 61 chr1 10660157 10661410 -186534022 + L1_Mur3 LINE L1 2135 3356 -2524 2 666 357 319 105 57 chr1 10661926 10662402 -186533030 + L1ME1 LINE L1 1188 1686 -4556 2 666 551 85 12 0 chr1 10662416 10662498 -186532934 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 666 533 227 91 30 chr1 10662502 10662634 -186532798 + B1_Mus1 SINE Alu 9 148 0 2 666 247 254 0 29 chr1 10662649 10662718 -186532714 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 2 666 2414 160 10 3 chr1 10662719 10663102 -186532330 - ORR1B1 LTR MaLR -8 386 1 2 666 435 19 0 0 chr1 10663124 10663176 -186532256 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 666 399 326 128 18 chr1 10663517 10663854 -186531578 + L1ME1 LINE L1 2156 2529 -3617 2 666 788 282 66 49 chr1 10663903 10663982 -186531450 - B4 SINE B4 0 292 225 2 666 547 39 26 0 chr1 10663982 10664060 -186531372 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 2 666 788 282 66 49 chr1 10664060 10664193 -186531239 - B4 SINE B4 -68 224 82 2 666 297 0 0 0 chr1 10664193 10664226 -186531206 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 666 788 282 66 49 chr1 10664226 10664299 -186531133 - B4 SINE B4 -211 81 5 2 666 1627 110 24 16 chr1 10664651 10664901 -186530531 + L1_Mus4 LINE L1 6383 6634 -2 2 666 320 301 243 39 chr1 10664904 10665474 -186529958 + L1ME1 LINE L1 5332 6017 -162 2 666 571 155 11 0 chr1 10665540 10665645 -186529787 + L1Md_F2 LINE L1 5506 5616 -562 2 666 7934 53 8 1 chr1 10665645 10666633 -186528799 + L1Md_F2 LINE L1 5588 6582 0 2 666 352 310 46 0 chr1 10666650 10666737 -186528695 + PB1D10 SINE Alu 1 91 -26 2 666 384 40 0 0 chr1 10666762 10666812 -186528620 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 666 2050 93 81 62 chr1 10669135 10669456 -186525976 - ORR1A4 LTR MaLR 0 329 3 2 666 234 355 83 9 chr1 10669511 10669619 -186525813 - Tigger5 DNA MER2_type 0 2406 2291 2 666 334 354 82 67 chr1 10669642 10669836 -186525596 - Tigger5 DNA MER2_type -2189 217 21 2 666 477 301 34 74 chr1 10670293 10670469 -186524963 - B4A SINE B4 -119 173 5 2 666 411 219 46 28 chr1 10670604 10670712 -186524720 + B1F2 SINE Alu 37 146 -3 2 666 658 219 0 17 chr1 10673780 10673839 -186521593 + polypyrimidine Low_complexity Low_complexity 123 180 0 2 666 1225 73 11 6 chr1 10673839 10674017 -186521415 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2 666 658 219 0 17 chr1 10674017 10674138 -186521294 + polypyrimidine Low_complexity Low_complexity 4 122 0 2 666 4447 76 23 2 chr1 10674208 10674773 -186520659 - L1_Mus4 LINE L1 0 6636 6060 2 666 700 349 94 47 chr1 10675719 10675939 -186519493 - MER21B LTR ERV1 -208 655 429 2 666 378 0 0 0 chr1 10675939 10675981 -186519451 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 2 666 700 349 94 47 chr1 10675981 10676187 -186519245 - MER21B LTR ERV1 -435 428 208 2 666 462 236 174 38 chr1 10676187 10676319 -186519113 + B3A SINE B2 2 151 -47 2 666 1287 237 68 52 chr1 10676319 10676684 -186518748 - ORR1D1 LTR MaLR -3 371 1 2 666 461 259 172 31 chr1 10676684 10676714 -186518718 + B3 SINE B2 157 186 -30 2 666 204 125 0 0 chr1 10676716 10676748 -186518684 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 666 32537 114 14 19 chr1 10676815 10683201 -186512231 + L1_Mus1 LINE L1 261 6567 0 2 666 224 172 17 17 chr1 10683639 10683698 -186511734 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 666 722 274 115 68 chr1 10683702 10683980 -186511452 - B4A SINE B4 -1 291 1 2 666 233 109 22 0 chr1 10685924 10685970 -186509462 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 666 3386 51 5 8 chr1 10686225 10686622 -186508810 - MTA_Mm LTR MaLR 0 396 1 2 666 402 21 0 0 chr1 10686902 10686949 -186508483 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 666 22 0 0 0 chr1 10687911 10687933 -186507499 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 414 186 0 0 chr1 10688193 10688279 -186507153 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 666 497 257 21 0 chr1 10688904 10689048 -186506384 - L1MA5 LINE L1 -4 6296 6150 2 666 192 324 28 0 chr1 10689537 10689608 -186505824 - L2 LINE L2 -998 2421 2349 2 666 21 0 0 0 chr1 10691752 10691773 -186503659 + AT_rich Low_complexity Low_complexity 1 21 0 2 666 282 148 36 36 chr1 10692258 10692370 -186503062 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 666 269 217 29 14 chr1 10692395 10692465 -186502967 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 666 28 0 0 0 chr1 10692502 10692530 -186502902 + AT_rich Low_complexity Low_complexity 1 28 0 2 666 22 0 0 0 chr1 10693914 10693936 -186501496 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 379 235 20 10 chr1 10694361 10694460 -186500972 - MIR SINE MIR -123 139 40 2 666 227 286 0 67 chr1 10694472 10694547 -186500885 + MER5A1 DNA MER1_type 16 85 -81 2 666 356 149 44 15 chr1 10695307 10695375 -186500057 - MER21B LTR ERV1 -573 290 221 2 666 224 167 0 20 chr1 10696562 10696611 -186498821 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 2 666 241 243 167 95 chr1 10697095 10697263 -186498169 - MER5A DNA MER1_type 0 189 10 2 666 1331 255 35 27 chr1 10697827 10698194 -186497238 + MTEb LTR MaLR 8 377 -2 2 666 750 211 0 0 chr1 10698349 10698529 -186496903 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 666 309 51 0 0 chr1 10699785 10699824 -186495608 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 666 288 325 123 62 chr1 10699896 10700192 -186495240 - LTR33A LTR ERVL -96 419 87 2 666 32 0 0 0 chr1 10700815 10700847 -186494585 + AT_rich Low_complexity Low_complexity 1 32 0 2 666 1034 144 0 6 chr1 10700950 10701131 -186494301 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 666 984 223 48 36 chr1 10701175 10701479 -186493953 - Lx6 LINE L1 -240 7220 6956 2 666 3125 164 25 4 chr1 10703122 10703672 -186491760 - Lx6 LINE L1 -1545 5915 5342 2 666 279 149 0 0 chr1 10703672 10703719 -186491713 + Lx5 LINE L1 5923 5969 -1081 2 666 268 191 32 63 chr1 10703755 10703850 -186491582 + Lx4B LINE L1 6961 7052 -6 2 666 3607 28 2 5 chr1 10703851 10704245 -186491187 - MTA_Mm LTR MaLR 0 396 4 2 666 866 19 9 0 chr1 10704245 10704353 -186491079 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 2 666 477 135 0 0 chr1 10704618 10704692 -186490740 + MusHAL1 LINE L1 511 584 -2128 2 666 3029 105 2 0 chr1 10704692 10705120 -186490312 + L1Md_F2 LINE L1 5158 5586 -297 2 666 9072 31 1 0 chr1 10705120 10706115 -186489317 + L1Md_F2 LINE L1 5587 6582 0 2 666 583 131 10 10 chr1 10706115 10706211 -186489221 + L1_Mur1 LINE L1 5455 5583 -717 2 666 695 303 20 35 chr1 10706824 10707026 -186488406 + MTEa LTR MaLR 36 234 -145 2 666 202 259 0 79 chr1 10708920 10708983 -186486449 + MIR3 SINE MIR 151 208 0 2 666 198 233 0 23 chr1 10710529 10710573 -186484859 - MER5B DNA MER1_type 0 178 136 2 666 412 300 68 62 chr1 10710635 10710858 -186484574 + B4A SINE B4 3 212 -80 2 666 3643 73 0 2 chr1 10711475 10712009 -186483423 + L1Md_F2 LINE L1 6133 6582 0 2 666 378 0 0 0 chr1 10712376 10712418 -186483014 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 666 352 188 100 100 chr1 10714270 10714501 -186480931 - Lx7 LINE L1 -15 7681 7451 2 666 3006 78 149 2 chr1 10714549 10715013 -186480419 - RLTR47_MM LTR ERV1 0 532 1 2 666 1683 100 4 16 chr1 10715272 10715517 -186479915 - ORR1A2 LTR MaLR 0 327 86 2 666 29 0 0 0 chr1 10716059 10716088 -186479344 + AT_rich Low_complexity Low_complexity 1 29 0 2 666 5195 147 22 24 chr1 10716101 10716859 -186478573 + L1_Mur3 LINE L1 3872 4624 -1256 2 666 276 30 0 0 chr1 10716859 10716892 -186478540 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 666 5195 147 22 24 chr1 10716892 10717077 -186478355 + L1_Mur3 LINE L1 4625 4813 -1067 2 666 308 152 0 0 chr1 10717077 10717123 -186478309 - ORR1C1 LTR MaLR 0 378 333 2 666 2136 107 6 28 chr1 10717123 10717449 -186477983 + ORR1A2 LTR MaLR 1 319 -8 3 666 1356 206 69 51 chr1 10717452 10717784 -186477648 - ORR1C1 LTR MaLR -40 338 1 2 666 4105 180 41 53 chr1 10717785 10718690 -186476742 + L1_Mur3 LINE L1 4810 5703 -177 2 666 277 81 0 0 chr1 10718691 10718728 -186476704 - MTD LTR MaLR -382 37 1 3 666 1346 206 29 4 chr1 10718730 10719003 -186476429 + Lx6 LINE L1 6865 7144 -316 3 666 270 0 0 0 chr1 10719003 10719033 -186476399 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 666 7720 35 5 3 chr1 10719037 10719959 -186475473 - L1Md_F2 LINE L1 -3 6579 5656 3 666 2806 24 0 0 chr1 10719961 10720293 -186475139 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 666 44399 19 6 3 chr1 10720293 10726744 -186468688 - IAPEz-int LTR ERVK 0 6481 9 3 666 2795 24 0 0 chr1 10726744 10727079 -186468353 - IAPLTR1a_Mm LTR ERVK -2 335 1 3 666 4067 44 0 2 chr1 10727079 10727603 -186467829 - L1_Mm LINE L1 -222 5661 5139 3 666 1286 245 25 3 chr1 10727603 10727923 -186467509 + Lx6 LINE L1 7133 7459 -1 3 666 2094 149 158 14 chr1 10728349 10728868 -186466564 + RMER17C-int LTR ERVK 2645 3238 0 3 666 607 196 28 47 chr1 10728868 10729028 -186466404 + RMER17C LTR ERVK 1 279 -131 3 666 626 0 14 0 chr1 10729028 10729102 -186466330 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 666 486 228 162 25 chr1 10729102 10729215 -186466217 + RMER17C LTR ERVK 280 410 0 3 666 226 239 55 27 chr1 10729694 10729767 -186465665 - ID2 SINE ID -7 76 2 3 666 966 193 37 56 chr1 10729956 10730170 -186465262 - B3 SINE B2 -6 210 1 3 666 445 284 97 20 chr1 10730179 10730427 -186465005 + LTR37A LTR ERV1 151 417 -9 3 666 375 299 139 20 chr1 10730645 10730846 -186464586 + MER57C2 LTR ERV1 9 233 -201 3 666 309 161 35 35 chr1 10731413 10731471 -186463961 - B1_Mur4 SINE Alu -54 93 36 3 666 330 265 19 47 chr1 10731791 10731898 -186463534 + L1MB7 LINE L1 5297 5400 -746 3 666 407 282 30 31 chr1 10732096 10732288 -186463144 + L1MB7 LINE L1 5650 5845 -329 3 666 4048 47 0 0 chr1 10732328 10732839 -186462593 - L1Md_F2 LINE L1 -429 6153 5643 3 666 3159 47 0 0 chr1 10732832 10733270 -186462162 + L1Md_F2 LINE L1 6155 6582 0 3 666 297 266 75 0 chr1 10733385 10733479 -186461953 + L1MB7 LINE L1 6006 6106 -78 3 666 564 315 37 5 chr1 10733840 10734057 -186461375 - ID_B1 SINE B4 0 224 1 3 666 250 194 29 15 chr1 10734186 10734254 -186461178 - Charlie1a DNA MER1_type -65 1390 1322 3 666 304 212 224 0 chr1 10734526 10734611 -186460821 - MLT1A1 LTR MaLR -274 134 31 3 666 26987 92 25 34 chr1 10734773 10737537 -186457895 - L1_Mus2 LINE L1 0 6566 3826 3 666 1123 76 0 0 chr1 10737537 10737681 -186457751 + B1_Mus1 SINE Alu 5 148 0 3 666 26987 110 31 32 chr1 10737681 10738423 -186457009 - L1_Mus2 LINE L1 -2058 3825 3175 3 666 275 0 0 28 chr1 10738423 10738459 -186456973 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 666 26987 129 32 47 chr1 10738459 10741174 -186454258 - L1_Mus2 LINE L1 -2709 3174 414 3 666 1325 280 24 43 chr1 10741389 10741856 -186453576 + Lx8 LINE L1 6779 7236 -237 3 666 231 149 29 43 chr1 10742671 10742741 -186452691 + (TATG)n Simple_repeat Simple_repeat 3 71 0 3 666 656 317 105 104 chr1 10742741 10743192 -186452240 + L2 LINE L2 2172 2628 -791 3 666 1095 103 0 14 chr1 10743192 10743339 -186452093 - B1_Mus2 SINE Alu 0 147 3 3 666 656 317 105 104 chr1 10743339 10743552 -186451880 + L2 LINE L2 2629 2837 -582 3 666 207 0 0 0 chr1 10743574 10743597 -186451835 + (A)n Simple_repeat Simple_repeat 1 23 0 3 666 270 280 149 0 chr1 10743687 10743794 -186451638 + MLT1D LTR MaLR 31 153 -352 3 666 917 307 75 27 chr1 10743814 10744149 -186451283 - MLT1A0 LTR MaLR -12 353 3 3 666 283 141 31 0 chr1 10745214 10745278 -186450154 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 666 751 198 13 0 chr1 10745627 10745865 -186449567 + CT-rich Low_complexity Low_complexity 1 241 0 3 666 204 172 78 0 chr1 10746664 10746780 -186448652 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 666 324 0 0 0 chr1 10746833 10746869 -186448563 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 666 630 355 78 8 chr1 10746884 10747142 -186448290 - B4 SINE B4 -16 276 1 3 666 29 28 0 0 chr1 10747142 10747178 -186448254 + AT_rich Low_complexity Low_complexity 1 36 0 3 666 389 281 79 30 chr1 10747338 10747503 -186447929 - MIRb SINE MIR -58 210 38 3 666 315 283 94 50 chr1 10747666 10747867 -186447565 + RLTR42-int LTR ERVK 1191 1400 -4122 3 666 198 0 0 0 chr1 10747869 10747891 -186447541 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 667 602 49 12 0 chr1 10748050 10748132 -186447300 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 667 405 70 0 0 chr1 10750658 10750715 -186444717 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 3 667 1097 96 0 0 chr1 10750717 10750863 -186444569 - B1_Mus1 SINE Alu 0 148 3 3 667 12000 52 3 21 chr1 10750899 10752705 -186442727 - L1Md_F2 LINE L1 -585 5997 4233 3 667 9322 72 1 1 chr1 10752700 10754014 -186441418 + L1Md_F2 LINE L1 2942 4255 -1628 3 667 266 271 40 54 chr1 10755642 10755790 -186439642 + LTR33 LTR ERVL 300 445 -70 3 667 733 289 119 23 chr1 10755935 10756237 -186439195 + MLT1A0 LTR MaLR 1 347 -27 3 667 1171 256 65 62 chr1 10756653 10756892 -186438540 - MTE2b LTR MaLR -45 334 94 3 667 3277 16 42 0 chr1 10756892 10757272 -186438160 + MTA_Mm LTR MaLR 1 396 0 3 667 1171 256 65 62 chr1 10757272 10757357 -186438075 - MTE2b LTR MaLR -286 93 9 3 667 1988 209 131 49 chr1 10757371 10758004 -186437428 - RMER6C LTR ERVK -5 685 1 3 667 478 155 21 0 chr1 10758364 10758461 -186436971 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 667 288 282 13 0 chr1 10758483 10758561 -186436871 - MT2B LTR ERVL -519 82 4 3 667 971 203 156 199 chr1 10758616 10758961 -186436471 - MT2A LTR ERVL -109 424 89 3 667 351 0 0 0 chr1 10758961 10759000 -186436432 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 667 971 203 156 199 chr1 10759000 10759097 -186436335 - MT2A LTR ERVL -445 88 1 3 667 266 348 150 58 chr1 10759438 10760037 -186435395 + L2 LINE L2 2094 2747 -672 3 667 243 258 16 0 chr1 10760528 10760590 -186434842 - MLT1E2 LTR MaLR -8 459 397 3 667 637 291 159 38 chr1 10760922 10761359 -186434073 - MLT1E2 LTR MaLR -132 495 21 3 667 26 30 0 0 chr1 10763600 10763633 -186431799 + AT_rich Low_complexity Low_complexity 1 33 0 3 667 218 195 0 0 chr1 10763833 10763874 -186431558 + T-rich Low_complexity Low_complexity 5 45 0 3 667 190 106 21 21 chr1 10763975 10764023 -186431409 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 3 667 512 250 117 0 chr1 10764142 10764270 -186431162 + B3A SINE B2 12 154 -44 3 667 180 0 0 0 chr1 10764270 10764290 -186431142 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 667 253 276 147 32 chr1 10764290 10764318 -186431114 + B2_Mm1t SINE B2 156 185 -8 3 667 278 333 14 65 chr1 10764732 10764870 -186430562 + MLT1A1 LTR MaLR 268 398 -10 3 667 352 207 0 0 chr1 10765172 10765251 -186430181 - BC1_Mm scRNA scRNA -2 81 3 3 667 188 316 130 9 chr1 10765638 10765753 -186429679 - MIRc SINE MIR -114 154 26 3 667 1160 200 19 0 chr1 10766197 10766402 -186429030 - B3 SINE B2 -6 210 2 3 667 206 366 0 47 chr1 10766403 10766509 -186428923 + L3 LINE CR1 2148 2248 -2241 3 667 604 321 18 33 chr1 10766604 10766770 -186428662 + B3A SINE B2 2 168 -30 3 667 421 335 24 2 chr1 10766824 10767081 -186428351 + L1M2 LINE L1 5505 5773 -530 3 667 469 303 49 8 chr1 10767622 10767745 -186427687 + B1F SINE Alu 1 128 -21 3 667 780 11 0 0 chr1 10767745 10767834 -186427598 + (GAGAA)n Simple_repeat Simple_repeat 4 92 0 3 667 412 308 32 1 chr1 10767844 10768007 -186427425 + MLT1A0 LTR MaLR 222 374 -16 3 667 257 287 81 0 chr1 10768155 10768242 -186427190 + Tigger16a DNA Tigger 835 928 -5 3 667 629 285 143 59 chr1 10769272 10769664 -186425768 - RMER13A LTR ERVK -417 491 21 3 667 822 248 64 55 chr1 10769702 10769937 -186425495 - B4 SINE B4 -41 251 15 3 667 30 0 0 0 chr1 10770104 10770134 -186425298 + AT_rich Low_complexity Low_complexity 1 30 0 3 667 573 147 0 0 chr1 10770134 10770243 -186425189 + (TAG)n Simple_repeat Simple_repeat 1 109 0 3 667 378 42 0 0 chr1 10770241 10770289 -186425143 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 667 245 272 0 129 chr1 10770290 10770383 -186425049 - RSINE1 SINE B4 0 165 85 3 667 204 83 41 20 chr1 10770401 10770450 -186424982 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 3 667 303 28 0 0 chr1 10770538 10770574 -186424858 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 667 453 181 0 0 chr1 10771226 10771320 -186424112 + (TATG)n Simple_repeat Simple_repeat 4 97 0 3 667 197 158 53 0 chr1 10772704 10772742 -186422690 - L3 LINE CR1 -3093 1396 1357 3 667 203 103 0 25 chr1 10772990 10773030 -186422402 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 667 336 286 22 33 chr1 10774954 10775135 -186420297 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 667 378 0 0 0 chr1 10775150 10775192 -186420240 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 667 258 81 0 0 chr1 10775192 10775228 -186420204 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 667 567 53 0 0 chr1 10776790 10776865 -186418567 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 667 38337 19 3 7 chr1 10776933 10783084 -186412348 - L1Md_A LINE L1 0 6582 457 3 667 426 254 71 84 chr1 10783115 10783636 -186411796 - L1MA4 LINE L1 -30 6270 5771 3 667 288 0 0 0 chr1 10783766 10783798 -186411634 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 667 466 91 13 13 chr1 10783869 10783947 -186411485 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 667 215 31 0 30 chr1 10785375 10785408 -186410024 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 667 503 318 146 64 chr1 10785890 10786626 -186408806 - L2a LINE L2 -42 3384 2586 3 667 776 304 14 41 chr1 10786626 10786918 -186408514 - B4A SINE B4 -8 284 1 3 667 473 300 152 93 chr1 10786918 10787251 -186408181 - L2a LINE L2 -834 2585 2228 3 667 245 89 44 15 chr1 10787360 10787428 -186408004 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 3 667 203 289 177 24 chr1 10787507 10787631 -186407801 - L2a LINE L2 -1171 2248 2106 3 667 2375 156 93 34 chr1 10788065 10788568 -186406864 + RMER16 LTR ERVK 1 533 0 3 667 3034 306 161 13 chr1 10788964 10790082 -186405350 - ORR1E-int LTR MaLR -296 1284 2 3 667 452 281 273 86 chr1 10790083 10790398 -186405034 - ORR1E LTR MaLR 0 379 6 3 667 2821 86 29 14 chr1 10790522 10790937 -186404495 + BGLII LTR ERVK 1 421 0 3 667 23 0 0 0 chr1 10791122 10791145 -186404287 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 2879 263 97 23 chr1 10791152 10792121 -186403311 + Lx8 LINE L1 6196 7236 -237 3 667 22 0 0 0 chr1 10793212 10793234 -186402198 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 291 286 75 48 chr1 10793928 10794075 -186401357 + Tigger7 DNA MER2_type 2316 2466 -25 3 667 333 47 0 0 chr1 10794176 10794219 -186401213 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 667 497 256 68 8 chr1 10794219 10794328 -186401104 - RSINE1 SINE B4 -40 125 9 4 667 3249 214 95 42 chr1 10794446 10795354 -186400078 + Lx6 LINE L1 61 1016 -6712 4 667 18778 157 73 31 chr1 10797772 10798813 -186396619 + Lx6 LINE L1 1006 2059 -3821 4 667 471 35 0 0 chr1 10798813 10798870 -186396562 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 667 18778 158 97 45 chr1 10798870 10798929 -186396503 + Lx6 LINE L1 2060 2086 -3794 4 667 282 29 0 0 chr1 10798929 10798964 -186396468 + (CAA)n Simple_repeat Simple_repeat 1 35 0 4 667 18778 172 87 41 chr1 10798964 10803401 -186392031 + Lx6 LINE L1 2087 6807 -653 4 667 180 0 0 0 chr1 10803402 10803422 -186392010 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 667 441 386 40 0 chr1 10803629 10803831 -186391601 + MER20 DNA MER1_type 2 211 -8 4 667 1095 68 7 45 chr1 10804028 10804182 -186391250 + B1_Mus1 SINE Alu 1 148 0 4 667 252 0 0 0 chr1 10804184 10804212 -186391220 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 667 335 302 0 0 chr1 10804953 10805039 -186390393 + RSINE1 SINE B4 3 88 -77 4 667 231 36 0 0 chr1 10805039 10805067 -186390365 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 4 667 393 229 70 19 chr1 10805069 10805230 -186390202 - L1_Mur3 LINE L1 -2472 3671 3472 4 667 1726 157 60 78 chr1 10805231 10805631 -186389801 + RLTR9C LTR ERVK 1 393 0 4 667 581 243 13 34 chr1 10805674 10805823 -186389609 - B1_Mur2 SINE Alu 0 149 4 4 667 738 200 7 7 chr1 10806810 10806951 -186388481 - B1_Mus2 SINE Alu -3 144 4 4 667 2792 12 3 0 chr1 10806951 10807270 -186388162 - RLTRETN_Mm LTR ERVK -2 320 1 4 667 39998 22 0 6 chr1 10807270 10812142 -186383290 - MMETn-int LTR ERVK 0 4844 1 4 667 2834 9 3 0 chr1 10812142 10812463 -186382969 - RLTRETN_Mm LTR ERVK 0 322 1 4 667 829 272 96 41 chr1 10812749 10813143 -186382289 + L1MA8 LINE L1 4322 4737 -1403 4 667 1114 146 7 3 chr1 10813319 10813627 -186381805 + L1VL4 LINE L1 226 585 -5717 4 667 7911 143 22 186 chr1 10813614 10813881 -186381551 + Lx2 LINE L1 3970 4235 -1648 4 667 2475 95 80 90 chr1 10813881 10814368 -186381064 - RLTR45 LTR ERVK 0 482 1 4 667 7911 134 32 119 chr1 10814368 10817106 -186378326 + Lx2 LINE L1 4236 6643 -354 4 667 1219 153 5 23 chr1 10817106 10817327 -186378105 + Lx2 LINE L1 6775 6991 -6 4 667 3465 163 57 7 chr1 10817428 10818046 -186377386 + RLTR33 LTR ERVK 4 652 -26 4 667 310 222 33 22 chr1 10818047 10818139 -186377293 + L1MA8 LINE L1 4856 4948 -1195 4 667 259 234 16 0 chr1 10818139 10818203 -186377229 + GA-rich Low_complexity Low_complexity 1 65 0 4 667 513 269 164 8 chr1 10818239 10818603 -186376829 + L1MA8 LINE L1 5068 5486 -805 4 667 383 305 3 3 chr1 10818618 10818725 -186376707 + PB1D7 SINE Alu 18 124 -23 4 667 432 244 147 49 chr1 10818733 10818957 -186376475 + L1MA8 LINE L1 5494 5739 -552 4 667 3072 93 0 12 chr1 10818991 10819403 -186376029 - MTB_Mm LTR MaLR 0 407 1 4 667 6052 141 86 53 chr1 10819403 10819558 -186375874 - MTB_Mm-int LTR MaLR 0 1258 1074 4 667 1667 121 15 22 chr1 10819558 10819829 -186375603 + Lx3B LINE L1 6700 6968 -5 4 667 6052 141 86 53 chr1 10819829 10820886 -186374546 - MTB_Mm-int LTR MaLR -185 1073 6 4 667 2818 99 5 58 chr1 10820889 10821319 -186374113 - MTB_Mm LTR MaLR 0 407 1 4 667 381 221 150 12 chr1 10821326 10821386 -186374046 + L1MA8 LINE L1 5803 5883 -429 4 667 315 0 0 0 chr1 10821386 10821421 -186374011 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 667 507 234 191 22 chr1 10821421 10821765 -186373667 + L1MA8 LINE L1 5884 6285 -6 4 667 1208 98 11 27 chr1 10822189 10822377 -186373055 - B2_Mm2 SINE B2 -9 186 2 4 667 690 296 12 17 chr1 10822428 10822448 -186372984 - B3A SINE B2 -27 171 153 4 667 417 39 0 0 chr1 10822448 10822499 -186372933 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 667 690 296 12 17 chr1 10822499 10822650 -186372782 - B3A SINE B2 -46 152 1 4 667 6244 100 70 12 chr1 10823760 10824738 -186370694 - Lx2 LINE L1 -5 6992 5959 4 667 2892 35 5 8 chr1 10824871 10825248 -186370184 - L1_Mus1 LINE L1 -505 6062 5687 4 667 4764 61 2 0 chr1 10825248 10825839 -186369593 + L1_Mus1 LINE L1 5976 6567 0 4 667 513 0 0 0 chr1 10826725 10826782 -186368650 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 667 210 336 133 0 chr1 10826809 10826922 -186368510 - MIR SINE MIR -123 139 12 4 667 558 262 48 18 chr1 10827058 10827225 -186368207 - MTD LTR MaLR -172 247 76 4 667 1008 313 63 0 chr1 10827243 10827552 -186367880 + Lx8 LINE L1 7058 7383 -90 4 667 357 24 0 0 chr1 10827552 10827594 -186367838 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 4 667 1008 313 63 0 chr1 10827594 10827667 -186367765 + Lx8 LINE L1 7384 7463 -10 4 667 750 201 20 14 chr1 10828778 10828924 -186366508 + B1_Mus2 SINE Alu 1 147 0 4 667 201 127 0 127 chr1 10828925 10828988 -186366444 + A-rich Low_complexity Low_complexity 2 56 0 4 667 230 309 0 0 chr1 10829127 10829208 -186366224 + A-rich Low_complexity Low_complexity 1 81 0 4 667 5640 138 61 20 chr1 10829231 10830211 -186365221 - RLTR13D2 LTR ERVK -3 1020 1 4 667 207 139 0 0 chr1 10830316 10830352 -186365080 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 667 5780 209 31 9 chr1 10830383 10831624 -186363808 - Lx7 LINE L1 -282 7414 6146 4 667 1722 246 74 50 chr1 10831624 10832227 -186363205 + RLTR22_Mur LTR ERVK 1 807 -597 4 667 1420 159 52 10 chr1 10832307 10832663 -186362769 - L1_Mur3 LINE L1 -876 5001 4602 4 667 859 300 60 43 chr1 10833548 10833848 -186361584 - MTE2a LTR MaLR 0 379 75 4 667 303 28 0 0 chr1 10833956 10833992 -186361440 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 667 642 358 88 27 chr1 10834011 10834272 -186361160 + B4A SINE B4 12 288 -4 4 667 207 0 0 0 chr1 10834871 10834894 -186360538 + (A)n Simple_repeat Simple_repeat 1 23 0 4 667 669 231 156 0 chr1 10835186 10835372 -186360060 + ID_B1 SINE B4 2 216 -8 4 667 243 122 0 0 chr1 10836751 10836800 -186358632 + (A)n Simple_repeat Simple_repeat 1 49 0 4 667 463 350 7 7 chr1 10836854 10836995 -186358437 - RSINE1 SINE B4 -23 142 2 4 667 27 0 0 0 chr1 10837119 10837146 -186358286 + AT_rich Low_complexity Low_complexity 1 27 0 4 667 384 359 124 31 chr1 10837469 10837810 -186357622 + L1MC4 LINE L1 6575 6936 -1106 4 667 201 39 0 0 chr1 10837810 10837836 -186357596 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 667 384 376 50 97 chr1 10837836 10838135 -186357297 + L1MC4 LINE L1 6937 7247 -795 4 667 302 233 163 0 chr1 10838716 10838802 -186356630 + RSINE1 SINE B4 11 110 -55 4 667 761 299 42 119 chr1 10841096 10841258 -186354174 - MTEa LTR MaLR -46 333 196 4 667 477 0 0 0 chr1 10841258 10841311 -186354121 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 667 761 299 42 119 chr1 10841311 10841509 -186353923 - MTEa LTR MaLR -184 195 1 4 667 2159 277 104 24 chr1 10841692 10842580 -186352852 + Lx9 LINE L1 6600 7558 -86 4 667 26 30 0 0 chr1 10842624 10842657 -186352775 + AT_rich Low_complexity Low_complexity 1 33 0 4 667 244 346 0 90 chr1 10843147 10843258 -186352174 + PB1D10 SINE Alu 1 101 -16 4 667 728 300 22 18 chr1 10843424 10843648 -186351784 + B4A SINE B4 3 227 -65 4 667 333 0 0 0 chr1 10843716 10843753 -186351679 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 667 190 299 34 22 chr1 10843898 10843987 -186351445 + L3 LINE CR1 843 932 -3557 4 667 561 311 192 41 chr1 10843996 10844313 -186351119 - MLT1A0 LTR MaLR 0 365 1 4 667 324 300 0 0 chr1 10845438 10845518 -186349914 - ID4_ SINE ID -1 82 3 4 667 1886 200 88 66 chr1 10845622 10846153 -186349279 + RLTR20B3 LTR ERVK 22 564 -13 4 667 603 254 22 0 chr1 10846487 10846668 -186348764 - L1MC2 LINE L1 -418 5926 5742 4 667 230 382 26 13 chr1 10846831 10846908 -186348524 + ID4_ SINE ID 2 79 -4 4 667 5148 122 39 24 chr1 10847301 10848183 -186347249 + RMER17A2 LTR ERVK 1 895 -11 4 667 657 217 29 0 chr1 10848646 10848784 -186346648 - B1_Mur1 SINE Alu -1 148 7 4 667 327 277 30 8 chr1 10848790 10848921 -186346511 - L1MA5 LINE L1 -93 6207 6074 4 667 358 312 107 40 chr1 10849052 10849063 -186346369 - B4 SINE B4 -50 242 170 4 667 432 254 116 23 chr1 10849063 10849192 -186346240 - B1_Mus2 SINE Alu 0 147 7 4 667 233 329 0 0 chr1 10849238 10849308 -186346124 - ID4 SINE ID -13 70 1 4 667 216 0 0 0 chr1 10849475 10849499 -186345933 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 667 3005 271 97 86 chr1 10849515 10850137 -186345295 + Lx8 LINE L1 2946 3597 -2250 4 667 195 42 0 0 chr1 10850137 10850161 -186345271 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 667 3005 271 97 86 chr1 10850161 10850297 -186345135 + Lx8 LINE L1 3598 3726 -2121 4 667 3426 28 5 0 chr1 10850297 10850691 -186344741 - MTA_Mm LTR MaLR 0 396 1 4 667 3005 271 97 86 chr1 10850691 10851091 -186344341 + Lx8 LINE L1 3727 4114 -1733 4 667 186 43 0 0 chr1 10851091 10851114 -186344318 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 4 667 3005 271 97 86 chr1 10851114 10852001 -186343431 + Lx8 LINE L1 4115 4998 -849 4 667 324 0 0 0 chr1 10852001 10852037 -186343395 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 667 3005 271 97 86 chr1 10852037 10852241 -186343191 + Lx8 LINE L1 4999 5223 -624 4 667 418 208 134 10 chr1 10852248 10852345 -186343087 + B3 SINE B2 99 207 -9 4 667 721 256 56 26 chr1 10852353 10852622 -186342810 + Lx8 LINE L1 5297 5573 -274 4 667 1851 193 107 3 chr1 10852663 10853027 -186342405 + MTC LTR MaLR 2 403 -18 4 667 747 219 28 6 chr1 10853033 10853212 -186342220 + Lx8 LINE L1 5628 5810 -37 4 667 6126 91 15 28 chr1 10853454 10855202 -186340230 + L1Md_F LINE L1 355 2082 -3801 4 667 5192 64 6 10 chr1 10855202 10855879 -186339553 + L1Md_F2 LINE L1 5909 6582 0 4 667 531 159 0 0 chr1 10855920 10856033 -186339399 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 667 314 346 72 6 chr1 10856050 10856230 -186339202 + Lx8 LINE L1 6186 6377 -1096 4 667 246 62 0 0 chr1 10856652 10856684 -186338748 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 4 667 361 81 32 0 chr1 10856738 10856800 -186338632 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 667 4926 161 16 7 chr1 10856863 10857714 -186337718 - Lx4A LINE L1 -29 7029 6171 4 667 3302 143 72 80 chr1 10857721 10858489 -186336943 - RMER17A LTR ERVK 0 889 1 4 667 983 118 48 24 chr1 10858491 10858700 -186336732 - Lx4A LINE L1 -899 6159 5946 4 667 330 132 0 0 chr1 10858702 10858755 -186336677 + (TCC)n Simple_repeat Simple_repeat 2 54 0 4 667 775 233 72 0 chr1 10859680 10859873 -186335559 + B3 SINE B2 1 207 -9 4 667 8231 22 0 3 chr1 10860379 10861311 -186334121 - RLTR13B3 LTR ERVK 0 929 1 4 667 580 263 60 20 chr1 10861339 10861507 -186333925 - B3 SINE B2 -27 166 2 4 667 273 225 74 12 chr1 10861537 10861618 -186333814 + L1MC4a LINE L1 7085 7170 -712 4 667 3785 169 46 5 chr1 10862465 10863113 -186332319 + RLTR17 LTR ERVK 1 675 -17 4 667 195 114 0 0 chr1 10863114 10863149 -186332283 + (T)n Simple_repeat Simple_repeat 1 35 0 4 667 794 213 31 18 chr1 10863395 10863572 -186331860 - B3 SINE B2 -9 186 2 4 667 295 310 85 17 chr1 10863729 10863847 -186331585 + B4A SINE B4 43 168 -124 4 667 248 245 0 0 chr1 10863934 10863983 -186331449 + (CATA)n Simple_repeat Simple_repeat 3 51 0 4 667 339 316 76 48 chr1 10864302 10864555 -186330877 - MLT2B3 LTR ERVL -3 564 271 5 667 209 321 0 0 chr1 10864638 10864694 -186330738 + (CATG)n Simple_repeat Simple_repeat 1 56 0 5 667 269 178 284 14 chr1 10864704 10864778 -186330654 - MTEa LTR MaLR -285 94 1 5 667 339 70 0 0 chr1 10865269 10865312 -186330120 - RLTR9D LTR ERVK 0 420 378 5 667 469 118 40 0 chr1 10865284 10865360 -186330072 - RLTR9D LTR ERVK -324 79 1 5 667 1802 101 26 71 chr1 10865360 10865668 -186329764 - ORR1A4 LTR MaLR -35 294 1 5 667 447 272 9 17 chr1 10865866 10865982 -186329450 + B4A SINE B4 1 115 -177 5 667 530 314 91 25 chr1 10866077 10866276 -186329156 - MLT2B3 LTR ERVL -338 216 5 5 667 437 257 116 9 chr1 10866386 10866610 -186328822 - L1MB4 LINE L1 -35 6145 5898 5 667 1649 178 155 31 chr1 10868215 10868628 -186326804 - RMER16 LTR ERVK 0 533 70 5 667 314 363 18 0 chr1 10868916 10869029 -186326403 - L2a LINE L2 -4 3422 3308 5 667 576 271 111 5 chr1 10869139 10869328 -186326104 + B3 SINE B2 2 210 -6 5 667 184 72 47 23 chr1 10869540 10869583 -186325849 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 667 937 249 15 0 chr1 10869591 10869788 -186325644 + B3 SINE B2 4 203 -13 5 667 576 53 245 0 chr1 10869850 10869944 -186325488 + B1_Mm SINE Alu 31 147 0 5 667 249 109 0 0 chr1 10869944 10869990 -186325442 + (A)n Simple_repeat Simple_repeat 1 46 0 5 667 1660 245 60 39 chr1 10870074 10870511 -186324921 + RLTR41 LTR ERV1 1 446 0 5 667 447 43 28 14 chr1 10870844 10870915 -186324517 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 667 200 276 0 17 chr1 10871000 10871059 -186324373 + GA-rich Low_complexity Low_complexity 3 60 0 5 667 261 0 0 0 chr1 10871419 10871448 -186323984 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 667 185 83 0 27 chr1 10871457 10871494 -186323938 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 667 36873 34 0 1 chr1 10872365 10877849 -186317583 - L1Md_T LINE L1 0 6585 1010 5 667 231 36 0 0 chr1 10877849 10877877 -186317555 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 5 667 1515 28 6 0 chr1 10877877 10878053 -186317379 - B2_Mm1t SINE B2 -15 178 2 5 667 3666 95 0 49 chr1 10878053 10878521 -186316911 - L1Md_T LINE L1 -5513 1009 564 5 667 1049 208 4 4 chr1 10878514 10878751 -186316681 - L1Md_T LINE L1 -6282 337 101 5 83 365 271 167 32 chr1 10878965 10879091 -186316341 - MLT1A LTR MaLR -243 147 5 5 668 1087 102 0 0 chr1 10879456 10879603 -186315829 - B1_Mm SINE Alu 0 147 1 5 668 4434 10 2 0 chr1 10879717 10880209 -186315223 + MT2_Mm LTR ERVL 1 493 0 5 668 45265 15 6 0 chr1 10880209 10885535 -186309897 + MERVL-int LTR ERVL 1 5360 -125 5 668 373 179 46 35 chr1 10885535 10885622 -186309810 + ORR1A3-int LTR MaLR 553 640 -1323 5 668 302 0 0 0 chr1 10885622 10885660 -186309772 + MERVL-int LTR ERVL 5448 5485 0 5 668 4434 10 2 0 chr1 10885660 10886152 -186309280 + MT2_Mm LTR ERVL 1 493 0 5 668 180 0 114 0 chr1 10886598 10886633 -186308799 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 668 420 379 72 69 chr1 10887859 10888091 -186307341 + MLT-int LTR MaLR 207 447 -1288 5 668 1061 74 0 0 chr1 10888091 10888226 -186307206 + B1_Mus1 SINE Alu 2 136 -12 5 668 389 76 15 0 chr1 10888227 10888293 -186307139 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 5 668 420 379 72 69 chr1 10888293 10888378 -186307054 + MLT-int LTR MaLR 448 527 -1208 5 668 1134 276 50 17 chr1 10888458 10888760 -186306672 - MTE2b LTR MaLR -12 367 56 5 668 303 252 59 29 chr1 10890004 10890106 -186305326 - Lx9 LINE L1 -369 7275 7171 5 668 279 175 98 130 chr1 10890105 10890197 -186305235 + Lx9 LINE L1 7330 7418 -226 5 668 420 20 0 0 chr1 10890207 10890256 -186305176 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 668 252 174 22 44 chr1 10890261 10890351 -186305081 + Lx9 LINE L1 7532 7619 -25 5 668 917 211 88 21 chr1 10890385 10890579 -186304853 + B3 SINE B2 6 212 -4 5 668 295 268 77 110 chr1 10890690 10890803 -186304629 + LTR48B LTR ERV1 1 108 -536 5 668 297 0 0 0 chr1 10890803 10890836 -186304596 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 5 668 295 268 77 110 chr1 10890836 10890877 -186304555 + LTR48B LTR ERV1 109 150 -494 5 668 264 187 134 26 chr1 10891184 10891275 -186304157 + LTR48B LTR ERV1 672 763 -24 5 668 758 282 66 9 chr1 10891694 10891905 -186303527 - ID_B1 SINE B4 0 224 2 5 668 198 103 0 0 chr1 10892418 10892447 -186302985 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 5 668 2076 169 42 148 chr1 10892808 10893307 -186302125 + RLTR41 LTR ERV1 1 446 0 5 668 358 299 25 57 chr1 10893485 10893678 -186301754 + LTR40b LTR ERVL 165 465 0 5 668 256 78 39 19 chr1 10894747 10894799 -186300633 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 5 668 279 0 0 0 chr1 10895322 10895353 -186300079 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 668 923 213 240 21 chr1 10895353 10895641 -186299791 + ORR1D1 LTR MaLR 20 370 -4 5 668 1759 164 50 26 chr1 10895675 10896014 -186299418 + ORR1C1 LTR MaLR 4 350 -28 5 668 477 311 118 24 chr1 10896039 10896250 -186299182 - B4A SINE B4 -60 232 2 5 668 25 0 0 0 chr1 10896462 10896487 -186298945 + AT_rich Low_complexity Low_complexity 1 25 0 5 668 503 142 8 102 chr1 10896504 10896622 -186298810 - B1_Mur2 SINE Alu -1 148 42 5 668 715 125 22 33 chr1 10896624 10896806 -186298626 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 5 668 240 35 0 0 chr1 10896964 10896993 -186298439 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 668 1121 156 32 11 chr1 10897272 10897460 -186297972 + URR1B DNA MER1_type 2 193 -32 5 668 346 267 28 73 chr1 10897458 10897567 -186297865 + B3 SINE B2 113 216 0 5 668 279 228 101 16 chr1 10897675 10897804 -186297628 - L1MA6 LINE L1 -24 6276 6137 5 668 224 345 36 18 chr1 10898637 10898749 -186296683 - L2 LINE L2 -3115 304 191 5 668 605 69 0 11 chr1 10898864 10898952 -186296480 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 5 668 19793 101 3 7 chr1 10899073 10902749 -186292683 + L1Md_A LINE L1 458 4116 -1767 5 668 2593 58 9 3 chr1 10902747 10903092 -186292340 - L1Md_F2 LINE L1 -471 6111 5765 5 668 25409 116 8 15 chr1 10903090 10906119 -186289313 - L1VL4 LINE L1 -423 5460 2462 5 668 3117 63 2 2 chr1 10906119 10906515 -186288917 + MTA_Mm LTR MaLR 1 396 0 5 668 25409 127 7 35 chr1 10906515 10908309 -186287123 - L1VL4 LINE L1 -3422 2461 708 5 668 414 241 17 8 chr1 10908309 10908426 -186287006 - L1VL4 LINE L1 -5824 792 675 5 668 330 313 150 17 chr1 10908461 10908695 -186286737 - L1VL1 LINE L1 -6131 291 27 5 668 562 327 63 21 chr1 10909339 10909623 -186285809 + Tigger13a DNA MER2_type 429 724 -47 5 668 501 335 118 11 chr1 10909627 10910076 -186285356 + MLT2B4 LTR ERVL 1 552 -4 5 668 914 253 97 71 chr1 10910149 10910282 -186285150 + MTD LTR MaLR 57 189 -230 5 668 3861 175 109 18 chr1 10910282 10911114 -186284318 - RMER13B LTR ERVK 0 908 1 5 668 914 253 97 71 chr1 10911114 10911320 -186284112 + MTD LTR MaLR 190 405 -14 5 668 589 271 13 83 chr1 10911993 10912150 -186283282 - B3 SINE B2 -68 148 3 5 668 218 286 18 0 chr1 10912215 10912271 -186283161 + MIRb SINE MIR 204 260 -8 5 668 2370 41 2 281 chr1 10912458 10912999 -186282433 - RLTR10 LTR ERVK 0 390 1 5 668 8232 27 1 0 chr1 10913001 10913995 -186281437 - RLTR10-int LTR ERVK -3 1984 990 5 668 322 258 39 15 chr1 10914077 10914207 -186281225 - RLTR10-int LTR ERVK -5987 1594 1462 5 668 4091 42 20 2 chr1 10914271 10915178 -186280254 - RLTR10-int LTR ERVK -989 998 3 5 668 2370 41 2 281 chr1 10915180 10915721 -186279711 - RLTR10 LTR ERVK 0 390 1 5 668 305 346 111 14 chr1 10915740 10915957 -186279475 - L2 LINE L2 -1225 2194 1957 5 668 763 262 0 76 chr1 10916046 10916269 -186279163 + B3 SINE B2 1 206 -10 5 668 9409 185 69 45 chr1 10916772 10920076 -186275356 + Lx5 LINE L1 894 4091 -1789 5 668 891 172 35 6 chr1 10920112 10920282 -186275150 + Lx4B LINE L1 6865 7039 -19 5 668 777 76 0 0 chr1 10920290 10920395 -186275037 + (AATAG)n Simple_repeat Simple_repeat 1 105 0 5 668 1149 62 7 0 chr1 10920449 10920595 -186274837 + B1_Mus1 SINE Alu 2 148 0 5 668 2742 235 80 40 chr1 10920595 10922460 -186272972 + Lx5 LINE L1 5262 7434 -26 5 668 652 285 102 88 chr1 10922603 10923055 -186272377 + RMER13A LTR ERVK 113 605 -22 5 668 1648 220 39 43 chr1 10923322 10923763 -186271669 + RMER17B LTR ERVK 1 439 -519 5 668 1964 168 53 37 chr1 10923782 10924214 -186271218 + RMER13B LTR ERVK 272 710 -198 5 668 663 275 7 0 chr1 10924290 10924439 -186270993 + ID_B1 SINE B4 73 222 -2 5 668 337 279 13 0 chr1 10924548 10924627 -186270805 + RSINE1 SINE B4 10 89 -76 5 668 330 87 0 0 chr1 10925932 10925978 -186269454 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 5 668 1000 288 122 55 chr1 10926058 10926532 -186268900 - MT2A LTR ERVL -27 506 1 5 668 486 100 0 0 chr1 10926573 10926639 -186268793 + ORR1A2 LTR MaLR 1 66 -261 5 668 3291 27 29 17 chr1 10926639 10927056 -186268376 + RLTR10C LTR ERVK 1 422 -14 5 668 1917 70 12 4 chr1 10927067 10927324 -186268108 + ORR1A2 LTR MaLR 61 319 -8 5 668 241 250 0 0 chr1 10927547 10927595 -186267837 + polypyrimidine Low_complexity Low_complexity 3 50 0 5 668 333 0 0 0 chr1 10927627 10927664 -186267768 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 5 668 690 237 47 17 chr1 10927667 10927839 -186267593 - B3A SINE B2 -20 178 2 5 668 248 345 45 0 chr1 10927869 10927979 -186267453 - PB1D10 SINE Alu -2 115 1 5 668 1845 117 67 155 chr1 10928132 10928577 -186266855 - RMER17C LTR ERVK 0 410 5 5 668 261 0 0 0 chr1 10929662 10929691 -186265741 + (T)n Simple_repeat Simple_repeat 1 29 0 5 668 639 179 72 29 chr1 10929747 10929885 -186265547 - B1_Mur4 SINE Alu -1 149 6 5 668 1180 61 0 0 chr1 10929918 10930065 -186265367 + B1_Mm SINE Alu 1 147 0 5 668 183 68 65 43 chr1 10930069 10930115 -186265317 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 668 246 276 114 11 chr1 10930159 10930247 -186265185 + PB1D7 SINE Alu 23 119 -1 5 668 336 256 14 34 chr1 10930396 10930511 -186264921 - PB1D9 SINE Alu -2 147 40 5 668 216 143 0 0 chr1 10930919 10930961 -186264471 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 668 2073 161 38 48 chr1 10931797 10932035 -186263397 + ORR1B1 LTR MaLR 1 245 -149 5 668 183 42 0 0 chr1 10932035 10932059 -186263373 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 668 2073 161 38 48 chr1 10932059 10932217 -186263215 + ORR1B1 LTR MaLR 246 393 -1 5 668 182 62 0 30 chr1 10932399 10932432 -186263000 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 668 575 260 0 8 chr1 10932441 10932569 -186262863 - B3 SINE B2 -88 128 2 5 668 461 289 0 34 chr1 10932594 10932712 -186262720 + PB1D10 SINE Alu 3 116 -1 5 668 248 211 132 0 chr1 10932764 10932840 -186262592 + MER57E1 LTR ERV1 76 161 -211 5 668 243 0 0 0 chr1 10932876 10932903 -186262529 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 668 296 311 154 27 chr1 10933751 10933939 -186261493 + ID_B1 SINE B4 3 214 -10 6 668 327 200 86 144 chr1 10934141 10934177 -186261255 + Lx9 LINE L1 7381 7416 -228 6 668 279 114 0 0 chr1 10934177 10934221 -186261211 + (CATA)n Simple_repeat Simple_repeat 4 47 0 6 668 327 200 86 144 chr1 10934221 10934441 -186260991 + Lx9 LINE L1 7417 7622 -22 6 668 185 286 71 0 chr1 10935608 10935664 -186259768 + L2a LINE L2 3364 3423 -3 6 668 363 94 136 34 chr1 10935802 10935890 -186259542 + Lx9 LINE L1 7405 7501 -143 6 668 348 242 11 42 chr1 10935953 10936048 -186259384 - BC1_Mm scRNA scRNA -55 97 6 6 668 3372 35 5 0 chr1 10936086 10936480 -186258952 + MTA_Mm LTR MaLR 1 396 0 6 668 501 317 96 0 chr1 10937106 10937273 -186258159 + MLT2B2 LTR ERVL 101 283 -232 6 668 214 357 131 30 chr1 10937945 10938341 -186257091 + L2a LINE L2 2990 3425 -1 6 668 593 27 13 0 chr1 10938868 10938943 -186256489 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 668 482 331 37 30 chr1 10940293 10940427 -186255005 - RSINE1 SINE B4 -28 137 3 6 668 242 324 92 21 chr1 10940447 10940589 -186254843 - MLT1H2 LTR MaLR -5 484 333 6 668 2305 103 75 8 chr1 10941209 10941527 -186253905 + RMER6A LTR ERVK 1 330 -426 6 668 396 0 0 0 chr1 10941527 10941571 -186253861 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 668 2305 125 47 4 chr1 10941571 10941739 -186253693 + RMER6A LTR ERVK 331 507 -213 6 668 249 366 15 0 chr1 10942131 10942265 -186253167 + L1MCc LINE L1 1111 1246 -5177 6 668 237 265 74 19 chr1 10942514 10942741 -186252691 + L1MCc LINE L1 1707 1913 -5124 6 668 296 265 0 162 chr1 10943717 10943816 -186251616 + B4 SINE B4 2 84 -208 6 668 185 35 69 0 chr1 10943819 10943848 -186251584 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 668 632 239 0 15 chr1 10943853 10943989 -186251443 + B1F2 SINE Alu 4 137 -12 6 668 2410 138 37 3 chr1 10943989 10944366 -186251066 - ORR1B1 LTR MaLR -4 390 1 6 668 332 300 167 28 chr1 10944401 10944545 -186250887 + B4 SINE B4 107 270 -22 6 668 814 156 23 0 chr1 10944789 10944917 -186250515 + ORR1B2 LTR MaLR 150 280 -87 6 668 502 189 38 153 chr1 10945824 10945955 -186249477 + B1_Mur1 SINE Alu 2 117 -3 6 668 468 347 7 14 chr1 10946170 10946316 -186249116 - RSINE1 SINE B4 -17 148 4 6 668 218 57 0 54 chr1 10946347 10946384 -186249048 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 668 1270 61 0 0 chr1 10946384 10946531 -186248901 - B1_Mus1 SINE Alu 0 148 2 6 668 2288 232 68 9 chr1 10946535 10947095 -186248337 - Lx9 LINE L1 -1 7643 7051 6 668 670 220 198 62 chr1 10947121 10947445 -186247987 - RLTR9A LTR ERVK 0 368 1 6 668 258 178 22 0 chr1 10947496 10947541 -186247891 + Lx9 LINE L1 6328 6373 -1271 6 668 902 177 36 67 chr1 10947728 10947922 -186247510 + B2_Mm2 SINE B2 1 188 -7 6 668 4990 131 1 1 chr1 10947929 10948664 -186246768 + L1_Mm LINE L1 5142 5876 -7 6 668 2761 107 30 33 chr1 10948664 10949090 -186246342 + Lx LINE L1 6225 6649 -5 6 668 700 162 15 1 chr1 10949093 10949224 -186246208 - L1_Mus4 LINE L1 -477 6161 6017 6 668 224 91 0 22 chr1 10949859 10949904 -186245528 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 668 273 225 82 27 chr1 10950188 10950261 -186245171 + B1F SINE Alu 1 77 -72 6 668 1073 99 6 0 chr1 10950662 10950823 -186244609 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 6 668 1157 64 0 54 chr1 10950825 10950974 -186244458 - B1_Mus2 SINE Alu -6 141 1 6 668 328 303 53 35 chr1 10951049 10951162 -186244270 - PB1D10 SINE Alu 0 117 3 6 668 6454 126 22 20 chr1 10952028 10952979 -186242453 - Lx2 LINE L1 -1 6996 6044 6 668 471 253 42 0 chr1 10953012 10953107 -186242325 + PB1D9 SINE Alu 2 100 -20 6 668 224 222 0 9 chr1 10953139 10953248 -186242184 + (TA)n Simple_repeat Simple_repeat 1 108 0 6 668 281 224 8 0 chr1 10953343 10953468 -186241964 + (TA)n Simple_repeat Simple_repeat 1 126 0 6 668 213 65 0 0 chr1 10953948 10953979 -186241453 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 668 590 265 275 41 chr1 10954917 10955208 -186240224 - ORR1E LTR MaLR 0 359 1 6 668 446 290 165 33 chr1 10955354 10955536 -186239896 - B3 SINE B2 -7 209 4 6 668 183 42 0 0 chr1 10955933 10955957 -186239475 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 668 2353 139 51 73 chr1 10956412 10956863 -186238569 + RMER10A LTR ERVL 2 442 0 6 668 329 338 31 38 chr1 10957582 10957742 -186237690 + LTR33 LTR ERVL 353 511 -4 6 668 1310 232 69 33 chr1 10957848 10958006 -186237426 + MTEa LTR MaLR 4 163 -216 6 668 575 39 26 0 chr1 10958006 10958083 -186237349 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 668 1310 232 69 33 chr1 10958083 10958285 -186237147 + MTEa LTR MaLR 164 377 -2 6 668 351 0 0 0 chr1 10958286 10958325 -186237107 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 668 977 290 63 3 chr1 10958335 10958650 -186236782 + MLT1A0 LTR MaLR 32 365 0 6 668 1925 137 94 15 chr1 10958968 10959309 -186236123 + RLTR9A LTR ERVK 1 368 0 6 668 219 342 35 92 chr1 10959648 10959735 -186235697 + ID SINE ID 1 82 -142 6 668 252 211 0 17 chr1 10959736 10959794 -186235638 + A-rich Low_complexity Low_complexity 5 61 0 6 668 4889 134 19 24 chr1 10959923 10960756 -186234676 + Lx2 LINE L1 5709 6516 -481 6 668 34052 78 2 3 chr1 10960736 10966032 -186229400 + L1Md_Gf LINE L1 291 5677 -209 6 668 3988 7 119 16 chr1 10966034 10966481 -186228951 + MT2_Mm LTR ERVL 1 493 0 6 668 48579 15 2 1 chr1 10966481 10971744 -186223688 + MERVL-int LTR ERVL 1 5271 -214 6 668 3218 78 87 5 chr1 10971744 10972183 -186223249 - IAPLTR2_Mm LTR ERVK 0 475 1 6 668 48579 15 2 1 chr1 10972183 10972277 -186223155 + MERVL-int LTR ERVL 5272 5360 -125 6 668 387 167 46 35 chr1 10972277 10972364 -186223068 + ORR1A3-int LTR MaLR 553 640 -1323 6 668 283 26 0 0 chr1 10972364 10972402 -186223030 + MERVL-int LTR ERVL 5448 5485 0 6 668 3988 7 119 16 chr1 10972402 10972849 -186222583 + MT2_Mm LTR ERVL 1 493 0 6 668 7801 49 1 0 chr1 10972849 10973747 -186221685 + L1Md_F2 LINE L1 5672 6570 -12 6 668 243 88 0 0 chr1 10973787 10973821 -186221611 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 668 3588 110 4 12 chr1 10974025 10974522 -186220910 + Lx2 LINE L1 6489 6981 -16 6 668 216 140 62 41 chr1 10974603 10974700 -186220732 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 668 308 328 133 55 chr1 10975170 10975441 -186219991 + MLT1B LTR MaLR 87 378 -12 6 668 225 246 33 0 chr1 10975788 10975849 -186219583 + L1MC LINE L1 3990 4052 -2094 6 668 293 265 60 20 chr1 10976005 10976141 -186219291 + L1MC1 LINE L1 5889 6027 -317 6 668 489 71 0 0 chr1 10976402 10976472 -186218960 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 6 668 248 252 174 35 chr1 10976641 10976785 -186218647 + L1MC1 LINE L1 6181 6344 0 6 668 1630 192 56 77 chr1 10977946 10978007 -186217425 - ORR1C1 LTR MaLR -8 370 312 6 668 5009 57 5 7 chr1 10978007 10978595 -186216837 - LTRIS_Mus LTR ERV1 0 587 1 6 668 1630 192 56 77 chr1 10978595 10978818 -186216614 - ORR1C1 LTR MaLR -67 311 93 6 668 3478 40 22 0 chr1 10978818 10979220 -186216212 + IAPLTR2a LTR ERVK 1 411 0 6 668 1630 192 56 77 chr1 10979220 10979311 -186216121 - ORR1C1 LTR MaLR -286 92 2 6 668 518 351 76 16 chr1 10979525 10979774 -186215658 - MLT1D LTR MaLR -30 475 212 6 668 315 0 0 0 chr1 10983414 10983449 -186211983 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 668 223 281 16 0 chr1 10983775 10983839 -186211593 + (CGG)n Simple_repeat Simple_repeat 1 65 0 6 668 1277 48 7 0 chr1 10985379 10985525 -186209907 + B1_Mm SINE Alu 1 147 0 6 668 691 139 89 8 chr1 10985600 10985723 -186209709 + B1_Mus2 SINE Alu 13 145 -2 6 668 219 61 39 39 chr1 10985724 10985775 -186209657 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 6 668 205 243 0 0 chr1 10986002 10986039 -186209393 + polypyrimidine Low_complexity Low_complexity 1 37 0 6 668 255 224 21 86 chr1 10986039 10986132 -186209300 - ID_B1 SINE B4 -1 223 137 6 668 339 235 35 50 chr1 10986043 10986156 -186209276 - B1F SINE Alu -5 144 2 6 668 25 31 0 0 chr1 10986448 10986480 -186208952 + AT_rich Low_complexity Low_complexity 1 32 0 6 668 189 0 0 0 chr1 10986684 10986705 -186208727 + (A)n Simple_repeat Simple_repeat 1 21 0 6 668 374 123 41 0 chr1 10987867 10987940 -186207492 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 6 668 557 228 9 0 chr1 10987947 10988061 -186207371 + MER45B DNA Tip100 51 165 -875 6 668 372 241 59 17 chr1 10988080 10988198 -186207234 + MER45B DNA Tip100 916 1038 -2 6 668 287 305 47 19 chr1 10988221 10988328 -186207104 - MER94 DNA AcHobo -1 133 24 6 668 258 56 0 0 chr1 10988750 10988786 -186206646 + (T)n Simple_repeat Simple_repeat 1 36 0 6 668 279 0 0 0 chr1 10988805 10988836 -186206596 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 668 414 283 31 70 chr1 10988854 10988983 -186206449 - RSINE1 SINE B4 -36 129 6 6 668 606 267 30 106 chr1 10989492 10989756 -186205676 + MLT1B LTR MaLR 21 264 -126 6 668 252 213 13 26 chr1 10990819 10990896 -186204536 + GA-rich Low_complexity Low_complexity 1 76 0 6 668 825 284 57 87 chr1 10991040 10991410 -186204022 - ORR1E LTR MaLR 0 359 1 6 668 379 270 129 60 chr1 10992439 10992656 -186202776 + B4 SINE B4 42 273 -19 6 668 1486 217 31 71 chr1 10992714 10993096 -186202336 + ORR1D1 LTR MaLR 1 367 -7 6 668 252 77 0 0 chr1 10993129 10993168 -186202264 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 668 508 202 76 34 chr1 10993199 10993317 -186202115 - RMER13B LTR ERVK 0 908 786 6 668 2870 107 15 0 chr1 10993314 10993724 -186201708 - RMER13B LTR ERVK -492 416 1 6 668 1416 101 11 0 chr1 10994217 10994406 -186201026 + B2_Mm1t SINE B2 1 191 -2 6 668 207 0 0 0 chr1 10994581 10994604 -186200828 + (T)n Simple_repeat Simple_repeat 1 23 0 6 668 503 285 0 31 chr1 10995614 10995741 -186199691 + MLT1J LTR MaLR 229 351 -161 6 668 607 227 41 47 chr1 10995881 10996052 -186199380 - Lx6 LINE L1 0 7460 7291 6 668 593 318 157 11 chr1 10997111 10997391 -186198041 + MTD LTR MaLR 87 407 -12 6 668 189 0 0 0 chr1 10998172 10998193 -186197239 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 668 462 326 15 36 chr1 10998585 10998722 -186196710 - RSINE1 SINE B4 0 165 32 7 668 1212 182 16 47 chr1 10998771 10999025 -186196407 - ORR1C2 LTR MaLR 0 384 139 7 668 23 78 0 0 chr1 10999366 10999417 -186196015 + AT_rich Low_complexity Low_complexity 1 51 0 7 668 801 58 0 0 chr1 10999620 10999723 -186195709 + (TTCTG)n Simple_repeat Simple_repeat 2 104 0 7 668 243 355 53 11 chr1 10999843 10999937 -186195495 + B3 SINE B2 77 174 -42 7 668 271 220 0 78 chr1 11000003 11000067 -186195365 - PB1D10 SINE Alu -49 68 10 1 668 232 265 0 128 chr1 11000011 11000089 -186195343 - B4A SINE B4 -147 145 78 2 668 834 39 0 0 chr1 11000152 11000254 -186195178 + (TCTCC)n Simple_repeat Simple_repeat 3 104 0 3 668 577 185 78 49 chr1 11000378 11000520 -186194912 - B1_Mur1 SINE Alu -3 146 1 4 668 1995 193 80 35 chr1 11003662 11003947 -186191485 - RMER5 LTR ERV1 -51 483 199 5 668 667 154 0 7 chr1 11003947 11004084 -186191348 - Lx9 LINE L1 -7 7637 7502 6 668 1995 193 80 35 chr1 11004084 11004249 -186191183 - RMER5 LTR ERV1 -336 198 13 5 668 304 77 19 19 chr1 11004731 11004784 -186190648 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 668 272 261 22 0 chr1 11004840 11004944 -186190488 - L1MA6 LINE L1 -164 6136 6026 8 668 200 163 23 23 chr1 11004947 11004991 -186190441 + (CATA)n Simple_repeat Simple_repeat 1 44 0 9 668 252 250 14 81 chr1 11005246 11005257 -186190175 + B4A SINE B4 74 140 -150 1 668 340 186 16 33 chr1 11005257 11005318 -186190114 + B1_Mur4 SINE Alu 1 60 -90 1 668 203 88 0 29 chr1 11005381 11005416 -186190016 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 668 252 250 14 81 chr1 11005673 11005684 -186189748 + B4A SINE B4 74 140 -150 1 668 340 186 16 33 chr1 11005684 11005745 -186189687 + B1_Mur4 SINE Alu 1 60 -90 1 668 492 180 0 0 chr1 11005766 11005888 -186189544 + GA-rich Low_complexity Low_complexity 2 123 0 1 668 552 196 0 53 chr1 11005891 11006004 -186189428 + B1_Mus2 SINE Alu 40 146 -1 1 668 728 99 9 0 chr1 11006229 11006340 -186189092 + (TCTCC)n Simple_repeat Simple_repeat 3 114 0 1 668 489 82 31 0 chr1 11006320 11006417 -186189015 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 668 345 47 0 0 chr1 11006417 11006460 -186188972 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 668 545 315 50 22 chr1 11006467 11006649 -186188783 - B4A SINE B4 -8 284 98 2 668 1163 88 0 0 chr1 11006651 11006798 -186188634 + B1_Mus1 SINE Alu 2 148 0 2 668 187 54 26 26 chr1 11006799 11006837 -186188595 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 668 440 327 0 0 chr1 11006837 11006941 -186188491 - B4A SINE B4 -188 104 1 2 668 200 59 29 0 chr1 11006955 11006989 -186188443 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 668 203 252 75 75 chr1 11007305 11007412 -186188020 + L2 LINE L2 1921 2027 -1392 2 668 183 301 41 0 chr1 11007621 11007694 -186187738 + L2 LINE L2 2426 2501 -918 2 668 315 188 219 5 chr1 11007861 11007952 -186187480 - B1F1 SINE Alu 0 149 42 2 668 870 275 107 3 chr1 11008037 11008347 -186187085 - MER2 DNA MER2_type 0 345 4 2 668 214 306 51 85 chr1 11008366 11008484 -186186948 + L2 LINE L2 2873 2986 -433 2 669 533 259 112 46 chr1 11010155 11010209 -186185223 - B3 SINE B2 -2 193 135 2 669 423 83 0 0 chr1 11010209 11010269 -186185163 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 669 533 250 127 38 chr1 11010269 11010399 -186185033 - B3 SINE B2 -66 150 1 2 669 766 309 107 20 chr1 11010695 11010995 -186184437 + Tigger7 DNA MER2_type 22 347 -2144 2 669 565 292 100 9 chr1 11011122 11011353 -186184079 - MER2 DNA MER2_type -58 287 36 3 669 277 218 19 19 chr1 11012508 11012611 -186182821 + GA-rich Low_complexity Low_complexity 4 106 0 3 669 421 299 127 19 chr1 11013630 11013787 -186181645 + MLT1A0 LTR MaLR 65 238 -127 3 669 305 283 150 0 chr1 11013851 11013964 -186181468 + MLT1A0 LTR MaLR 236 365 -9 3 669 259 333 19 0 chr1 11014148 11014253 -186181179 - BC1_Mm scRNA scRNA -32 120 14 3 669 905 251 0 5 chr1 11015906 11016098 -186179334 + B3 SINE B2 19 209 -7 3 669 233 275 97 35 chr1 11016170 11016283 -186179149 + L3 LINE CR1 3493 3612 -877 3 669 264 299 18 53 chr1 11016362 11016475 -186178957 + PB1D9 SINE Alu 1 109 -11 3 669 551 262 48 5 chr1 11017568 11017756 -186177676 - B3A SINE B2 0 198 3 3 669 225 282 42 0 chr1 11018857 11018928 -186176504 - ID4_ SINE ID -8 75 2 3 669 2117 123 15 9 chr1 11019648 11019983 -186175449 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 669 6298 57 12 7 chr1 11019985 11020831 -186174601 - IAPEz-int LTR ERVK -2 6479 5630 3 669 3030 14 0 3 chr1 11020817 11021176 -186174256 - IAPEz-int LTR ERVK -3405 3076 2719 3 669 3844 37 214 0 chr1 11021175 11021988 -186173444 - IAPEz-int LTR ERVK -4136 2345 1359 3 669 4615 54 39 14 chr1 11021988 11022627 -186172805 - IAPEz-int LTR ERVK -5819 662 8 3 669 2117 123 15 9 chr1 11022627 11022962 -186172470 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 669 198 275 87 0 chr1 11022976 11023045 -186172387 + L2a LINE L2 3343 3417 -9 4 669 471 18 0 0 chr1 11023160 11023216 -186172216 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 669 443 215 8 47 chr1 11024839 11024966 -186170466 + MTD LTR MaLR 10 131 -288 4 669 468 252 122 0 chr1 11024990 11025129 -186170303 + MTD LTR MaLR 262 417 -2 4 669 263 300 44 26 chr1 11025414 11025527 -186169905 - MER102c DNA MER1_type -145 186 72 4 669 23 54 0 0 chr1 11025726 11025763 -186169669 + AT_rich Low_complexity Low_complexity 1 37 0 4 669 230 0 33 0 chr1 11026540 11026570 -186168862 + (CAA)n Simple_repeat Simple_repeat 1 31 0 4 669 186 258 84 70 chr1 11026610 11026681 -186168751 - MER5B DNA MER1_type -101 77 6 4 669 197 284 171 16 chr1 11026963 11027092 -186168340 - MIR SINE MIR -74 188 40 4 669 405 0 0 0 chr1 11028193 11028238 -186167194 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 669 27 0 0 0 chr1 11028651 11028678 -186166754 + AT_rich Low_complexity Low_complexity 1 27 0 4 669 294 294 128 10 chr1 11028846 11029049 -186166383 - L1M5 LINE L1 -1379 4767 4541 5 669 3209 140 31 32 chr1 11029646 11030904 -186164528 + L1VL4 LINE L1 419 1660 -2157 5 669 9658 91 17 6 chr1 11030885 11033075 -186162357 + L1_Mus1 LINE L1 4344 6564 -3 5 669 31 26 0 0 chr1 11033732 11033770 -186161662 + AT_rich Low_complexity Low_complexity 1 38 0 5 669 1467 281 135 22 chr1 11033771 11034445 -186160987 - Lx8 LINE L1 0 7473 6724 5 669 230 256 104 0 chr1 11035929 11036013 -186159419 - B1F2 SINE Alu -24 93 3 5 669 201 237 0 0 chr1 11036028 11036066 -186159366 + polypyrimidine Low_complexity Low_complexity 2 39 0 5 669 535 223 58 0 chr1 11036093 11036214 -186159218 - ID_B1 SINE B4 0 224 97 5 669 303 93 0 0 chr1 11036386 11036429 -186159003 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 669 629 290 13 19 chr1 11037546 11037704 -186157728 + B3A SINE B2 1 157 -41 5 669 279 240 187 0 chr1 11037735 11037810 -186157622 - B3 SINE B2 -8 208 120 6 669 261 0 0 0 chr1 11037938 11037967 -186157465 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 669 22 0 0 0 chr1 11038040 11038062 -186157370 + AT_rich Low_complexity Low_complexity 1 22 0 6 669 29607 94 3 11 chr1 11038213 11043356 -186152076 + L1Md_F LINE L1 394 5460 -423 6 669 189 147 0 0 chr1 11043505 11043539 -186151893 + (GGGAGA)n Simple_repeat Simple_repeat 5 38 0 6 669 27 0 0 0 chr1 11043539 11043566 -186151866 + AT_rich Low_complexity Low_complexity 1 27 0 6 669 423 0 0 0 chr1 11043566 11043613 -186151819 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 669 429 85 0 0 chr1 11043618 11043677 -186151755 - B1_Mm SINE Alu -16 131 73 6 669 267 286 71 12 chr1 11044242 11044327 -186151105 + MER20 DNA MER1_type 129 218 -1 6 669 195 129 0 0 chr1 11044500 11044531 -186150901 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 669 377 143 0 0 chr1 11044533 11044589 -186150843 - B1_Mur2 SINE Alu -8 141 86 7 669 1647 267 115 26 chr1 11044597 11045250 -186150182 + Charlie1a DNA MER1_type 474 1184 -271 7 669 278 291 129 77 chr1 11045285 11045479 -186149953 - B3 SINE B2 -12 204 1 7 669 375 190 44 101 chr1 11045538 11045696 -186149736 + Charlie1a DNA MER1_type 1250 1398 -57 7 669 278 26 0 25 chr1 11046183 11046223 -186149209 + (CAA)n Simple_repeat Simple_repeat 2 40 0 7 669 248 369 62 69 chr1 11046483 11046949 -186148483 + L2 LINE L2 2090 2552 -867 7 669 282 216 0 0 chr1 11049557 11049631 -186145801 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 669 204 200 0 0 chr1 11049690 11049735 -186145697 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 7 669 276 294 54 0 chr1 11049874 11049966 -186145466 - L1M5 LINE L1 -457 5667 5571 7 669 624 150 0 0 chr1 11050741 11050854 -186144578 + CT-rich Low_complexity Low_complexity 4 116 0 7 669 381 306 0 22 chr1 11051180 11051299 -186144133 - PB1D7 SINE Alu -1 119 3 7 669 249 33 0 0 chr1 11052138 11052168 -186143264 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 669 717 61 0 0 chr1 11052168 11052266 -186143166 + (GA)n Simple_repeat Simple_repeat 2 100 0 8 669 5537 91 44 7 chr1 11052332 11053820 -186141612 + L1VL2 LINE L1 282 1826 -1789 8 669 277 269 0 49 chr1 11053970 11054052 -186141380 - PB1D10 SINE Alu 0 117 40 8 669 34 65 0 0 chr1 11054769 11054831 -186140601 + AT_rich Low_complexity Low_complexity 1 62 0 8 669 22 56 0 0 chr1 11054944 11054980 -186140452 + AT_rich Low_complexity Low_complexity 1 36 0 8 669 247 200 71 0 chr1 11055072 11055142 -186140290 + L1M2 LINE L1 2745 2819 -3324 8 669 476 16 16 0 chr1 11056065 11056126 -186139306 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 669 540 285 132 19 chr1 11059026 11059556 -186135876 - L1M4 LINE L1 -364 5815 5215 8 669 23774 35 2 1 chr1 11059573 11063275 -186132157 - L1Md_F2 LINE L1 0 6582 2876 8 669 5103 42 1 2 chr1 11063260 11064211 -186131221 - L1Md_F2 LINE L1 -4293 1590 641 8 669 448 304 54 5 chr1 11064238 11064443 -186130989 - L1MD LINE L1 -965 5181 4967 9 669 654 138 0 0 chr1 11064700 11064809 -186130623 + (TCCC)n Simple_repeat Simple_repeat 3 111 0 9 669 346 233 250 0 chr1 11065070 11065250 -186130182 - L1M4c LINE L1 -3572 3434 3210 9 669 376 332 128 16 chr1 11065504 11065746 -186129686 - L1M4c LINE L1 -4705 2303 2035 9 669 839 171 14 0 chr1 11066003 11066143 -186129289 + B1_Mur4 SINE Alu 1 142 -8 9 669 225 0 0 0 chr1 11066143 11066168 -186129264 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 669 28 29 0 0 chr1 11066214 11066249 -186129183 + AT_rich Low_complexity Low_complexity 1 35 0 9 669 790 248 24 39 chr1 11066249 11066455 -186128977 - B3 SINE B2 -11 205 3 9 669 292 256 143 30 chr1 11066655 11066788 -186128644 - L1M4c LINE L1 -5802 1532 1385 9 669 1055 135 59 0 chr1 11066799 11066969 -186128463 - B2_Mm2 SINE B2 -14 181 2 9 669 304 261 15 98 chr1 11066997 11067129 -186128303 - L1M4c LINE L1 -5490 1414 1294 9 669 649 253 45 7 chr1 11067982 11068137 -186127295 - MTD LTR MaLR -254 165 5 9 669 1152 68 7 0 chr1 11068507 11068653 -186126779 + B1_Mus1 SINE Alu 1 147 -1 9 669 655 260 37 76 chr1 11069567 11069793 -186125639 - B3A SINE B2 -4 212 6 1 669 1519 174 150 35 chr1 11070594 11070968 -186124464 + MTD LTR MaLR 3 419 0 1 669 368 301 71 55 chr1 11072042 11072476 -186122956 - RLTR15 LTR ERVK -31 328 14 1 669 780 93 0 0 chr1 11072516 11072624 -186122808 - B1_Mur3 SINE Alu 0 149 42 1 669 236 184 74 62 chr1 11072559 11072640 -186122792 - RLTR25B LTR ERVK -519 509 428 1 669 1097 95 0 0 chr1 11072643 11072790 -186122642 - B1_Mus2 SINE Alu 0 147 1 1 669 1049 207 13 9 chr1 11073614 11073838 -186121594 + URR1B DNA MER1_type 1 225 0 1 669 720 130 51 44 chr1 11074379 11074516 -186120916 + B1_Mus2 SINE Alu 9 146 -1 1 669 285 290 0 0 chr1 11074740 11074809 -186120623 - MER52-int LTR ERV1 -3561 3530 3462 1 669 225 24 47 23 chr1 11076218 11076261 -186119171 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 1 669 468 0 0 0 chr1 11077534 11077586 -186117846 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 669 1016 293 12 29 chr1 11077718 11077964 -186117468 - B4A SINE B4 -41 251 10 1 669 231 88 0 0 chr1 11078485 11078519 -186116913 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 669 207 0 0 0 chr1 11078670 11078693 -186116739 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 669 293 308 54 60 chr1 11081420 11081586 -186113846 + ORR1E LTR MaLR 20 184 -175 1 669 1633 166 77 99 chr1 11081608 11081970 -186113462 - ORR1B1 LTR MaLR 0 394 41 1 669 387 193 276 17 chr1 11082935 11083051 -186112381 - B1_Mus1 SINE Alu -1 147 2 1 669 925 65 16 0 chr1 11083432 11083555 -186111877 + B1_Mus1 SINE Alu 24 148 0 1 669 856 220 75 47 chr1 11083613 11083932 -186111500 - MTEb LTR MaLR -2 377 1 1 669 2650 129 37 37 chr1 11083941 11084423 -186111009 - RLTR45 LTR ERVK 0 482 1 1 669 1760 184 141 3 chr1 11084449 11084819 -186110613 + MTC LTR MaLR 1 421 0 1 669 2151 124 94 65 chr1 11085405 11085818 -186109614 - RLTR23 LTR ERV1 0 430 6 1 669 1733 187 91 25 chr1 11086890 11087252 -186108180 + RMER10B LTR ERVL 13 398 0 1 669 309 230 56 22 chr1 11087658 11087747 -186107685 - B3A SINE B2 -59 139 48 1 669 557 233 19 143 chr1 11087854 11088224 -186107208 - Lx9 LINE L1 0 7644 7321 1 669 984 173 118 5 chr1 11089410 11089613 -186105819 + URR1A DNA MER1_type 1 226 0 1 669 215 61 0 29 chr1 11089928 11089962 -186105470 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 669 358 287 21 0 chr1 11090165 11090253 -186105179 + ID_B1 SINE B4 2 91 -133 1 669 1898 194 109 93 chr1 11090253 11090535 -186104897 - RMER4A LTR ERVK 0 585 347 1 669 498 17 0 0 chr1 11090535 11090594 -186104838 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 669 1898 164 116 10 chr1 11090594 11090879 -186104553 - RMER4A LTR ERVK -102 364 39 1 669 299 303 0 0 chr1 11090897 11090973 -186104459 + ID_B1 SINE B4 137 212 -12 1 669 1119 166 226 22 chr1 11092142 11092383 -186103049 + RMER1C Other Other 965 1241 -101 1 669 387 41 0 0 chr1 11092383 11092432 -186103000 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 669 1119 166 226 22 chr1 11092432 11092504 -186102928 + RMER1C Other Other 1242 1341 -1 1 669 231 254 18 0 chr1 11093466 11093521 -186101911 - ID2 SINE ID -21 62 7 1 669 180 219 0 0 chr1 11094449 11094490 -186100942 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 669 405 354 33 46 chr1 11094493 11094644 -186100788 - RSINE1 SINE B4 -6 159 11 1 669 26 50 0 0 chr1 11094711 11094751 -186100681 + AT_rich Low_complexity Low_complexity 1 40 0 1 669 23 0 0 0 chr1 11095753 11095776 -186099656 + AT_rich Low_complexity Low_complexity 1 23 0 1 669 22 56 0 0 chr1 11095820 11095856 -186099576 + AT_rich Low_complexity Low_complexity 1 36 0 1 669 541 311 10 98 chr1 11095930 11096133 -186099299 + B3A SINE B2 2 186 -12 1 669 28 0 0 0 chr1 11097414 11097442 -186097990 + AT_rich Low_complexity Low_complexity 1 28 0 1 669 24 0 0 0 chr1 11097462 11097486 -186097946 + AT_rich Low_complexity Low_complexity 1 24 0 1 669 309 336 107 30 chr1 11098149 11098447 -186096985 - RLTR16 LTR ERVK -256 436 99 1 669 206 348 161 34 chr1 11101884 11102083 -186093349 - MIRb SINE MIR -30 238 12 1 669 381 318 81 7 chr1 11104620 11104769 -186090663 - RSINE1 SINE B4 -3 162 3 1 669 434 309 112 65 chr1 11105176 11105515 -186089917 - ORR1E LTR MaLR -4 355 1 1 669 524 228 0 0 chr1 11105639 11105775 -186089657 - L1MA5 LINE L1 -6 6294 6159 1 669 2312 156 23 8 chr1 11105869 11106257 -186089175 + ORR1B1 LTR MaLR 1 394 0 1 669 434 363 21 0 chr1 11106405 11106595 -186088837 + Lx8 LINE L1 7137 7330 -143 1 669 220 382 0 0 chr1 11106932 11107008 -186088424 - B4 SINE B4 -215 77 2 1 669 459 0 0 0 chr1 11107487 11107538 -186087894 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 669 2425 144 7 19 chr1 11108521 11108933 -186086499 + MTB_Mm LTR MaLR 1 407 0 1 669 1989 284 35 22 chr1 11109427 11110412 -186085020 - L1M2 LINE L1 -811 5332 4336 1 669 269 259 14 0 chr1 11111013 11111128 -186084304 + L1MA5 LINE L1 5743 5928 -372 1 669 332 340 19 0 chr1 11111354 11111560 -186083872 - L1M3 LINE L1 -2025 4121 3912 1 669 237 299 84 17 chr1 11111710 11111829 -186083603 - RMER5 LTR ERV1 -105 429 303 1 669 454 285 96 23 chr1 11111878 11112097 -186083335 - RMER5 LTR ERV1 -298 236 2 1 669 522 209 158 6 chr1 11112098 11112262 -186083170 - L1M3 LINE L1 -2389 3751 3563 1 669 23 33 0 0 chr1 11112422 11112452 -186082980 + AT_rich Low_complexity Low_complexity 1 30 0 1 669 425 261 25 173 chr1 11112682 11112844 -186082588 - B1F1 SINE Alu -6 143 6 1 669 219 281 127 64 chr1 11112746 11112856 -186082576 - B4A SINE B4 -105 187 71 1 669 219 154 26 0 chr1 11112943 11112982 -186082450 + (CATA)n Simple_repeat Simple_repeat 1 40 0 1 669 24 0 0 0 chr1 11113482 11113506 -186081926 + AT_rich Low_complexity Low_complexity 1 24 0 1 669 216 164 45 0 chr1 11114554 11114621 -186080811 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1 669 886 121 6 6 chr1 11114638 11114796 -186080636 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 1 669 232 167 24 0 chr1 11115152 11115194 -186080238 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1 669 397 39 19 0 chr1 11115986 11116038 -186079394 - HAL1-3A_ME LINE L1 -830 2028 1976 1 669 467 201 25 0 chr1 11116048 11116207 -186079225 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 669 18980 89 72 47 chr1 11116386 11117338 -186078094 - L1_Mus3 LINE L1 0 6638 5660 1 669 1049 71 7 21 chr1 11117338 11117481 -186077951 - B1_Mus2 SINE Alu -5 142 2 1 669 18980 115 254 23 chr1 11117481 11117721 -186077711 - L1_Mus3 LINE L1 -224 5659 5458 1 669 1028 65 65 7 chr1 11117721 11117860 -186077572 - B1_Mus2 SINE Alu 0 147 1 1 669 18980 115 254 23 chr1 11117860 11119183 -186076249 - L1_Mus3 LINE L1 -426 5457 4106 1 669 742 81 0 75 chr1 11119183 11119317 -186076115 - L1_Mus1 LINE L1 0 6567 6444 1 669 18980 113 170 15 chr1 11119317 11122059 -186073373 - L1_Mus3 LINE L1 -1778 4105 432 1 669 216 0 0 0 chr1 11122723 11122747 -186072685 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 669 30 0 0 0 chr1 11123359 11123389 -186072043 + AT_rich Low_complexity Low_complexity 1 30 0 1 669 243 0 0 0 chr1 11123520 11123547 -186071885 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 669 999 99 0 21 chr1 11123549 11123693 -186071739 - B1_Mus1 SINE Alu -6 142 2 1 669 389 36 18 0 chr1 11123707 11123762 -186071670 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 1 669 1019 90 0 0 chr1 11123762 11123896 -186071536 - B1_Mus1 SINE Alu -13 135 2 1 669 191 170 0 21 chr1 11124421 11124469 -186070963 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 669 222 118 0 0 chr1 11124496 11124530 -186070902 + (T)n Simple_repeat Simple_repeat 1 34 0 1 669 1116 62 7 27 chr1 11127474 11127622 -186067810 - B1_Mm SINE Alu 0 147 3 1 669 188 310 151 51 chr1 11128385 11128598 -186066834 - MIRc SINE MIR -24 244 3 1 669 3677 129 30 30 chr1 11129025 11129624 -186065808 - MT2B LTR ERVL -2 599 1 1 669 786 296 40 57 chr1 11131038 11131285 -186064147 + B4 SINE B4 46 288 -4 1 669 289 360 8 0 chr1 11131331 11131456 -186063976 + CT-rich Low_complexity Low_complexity 1 126 0 1 669 28 61 0 0 chr1 11132187 11132236 -186063196 + AT_rich Low_complexity Low_complexity 1 49 0 1 669 519 92 0 0 chr1 11132278 11132365 -186063067 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 1 669 348 275 0 0 chr1 11133126 11133195 -186062237 + B4 SINE B4 220 288 -4 1 669 337 299 9 0 chr1 11133251 11133358 -186062074 + CT-rich Low_complexity Low_complexity 2 109 0 1 669 225 330 102 38 chr1 11133650 11133836 -186061596 - ORR1B2 LTR MaLR -93 274 77 1 669 351 0 0 0 chr1 11135120 11135159 -186060273 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 669 297 0 0 0 chr1 11135159 11135191 -186060241 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 669 283 193 29 47 chr1 11135867 11135964 -186059468 - MTEb LTR MaLR -8 371 256 1 669 1190 55 0 0 chr1 11136063 11136209 -186059223 + B1_Mus1 SINE Alu 1 146 -2 1 669 272 125 0 15 chr1 11136209 11136274 -186059158 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 669 222 91 0 0 chr1 11136916 11136949 -186058483 + (T)n Simple_repeat Simple_repeat 1 33 0 1 669 795 272 174 17 chr1 11138530 11138892 -186056540 + MTD LTR MaLR 1 419 0 1 669 312 259 32 67 chr1 11140163 11140269 -186055163 + PB1D7 SINE Alu 18 120 0 1 669 480 306 54 121 chr1 11140270 11140546 -186054886 + B4A SINE B4 1 265 -27 1 669 357 24 0 0 chr1 11140546 11140588 -186054844 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 669 480 306 54 121 chr1 11140588 11140624 -186054808 + B4A SINE B4 266 292 0 1 669 369 0 0 0 chr1 11140728 11140769 -186054663 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 670 444 19 0 0 chr1 11142481 11142534 -186052898 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 670 273 359 53 38 chr1 11142758 11142891 -186052541 + ID_B1 SINE B4 3 137 -87 1 670 284 309 73 8 chr1 11142849 11142973 -186052459 + B1F2 SINE Alu 15 146 -3 1 670 575 62 12 0 chr1 11143017 11143097 -186052335 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 670 259 368 13 46 chr1 11145262 11145413 -186050019 - MLT1H2 LTR MaLR -323 166 21 2 670 335 291 21 46 chr1 11146627 11146746 -186048686 - PB1D7 SINE Alu 0 127 5 2 670 402 121 0 0 chr1 11147163 11147229 -186048203 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 670 605 76 16 63 chr1 11147796 11147923 -186047509 - L1_Mus3 LINE L1 0 6638 6518 2 670 258 286 59 12 chr1 11148279 11148364 -186047068 + ID_B1 SINE B4 5 93 -131 2 670 221 30 61 0 chr1 11148413 11148446 -186046986 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 670 995 283 21 18 chr1 11148483 11148767 -186046665 - B4 SINE B4 0 292 8 2 670 725 224 117 25 chr1 11149494 11149691 -186045741 - B3 SINE B2 -1 215 1 2 670 22 0 0 0 chr1 11149701 11149723 -186045709 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 482 244 0 42 chr1 11149978 11150091 -186045341 + B1_Mur1 SINE Alu 18 149 0 2 670 348 107 0 0 chr1 11151523 11151545 -186043887 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 670 683 44 0 11 chr1 11151545 11151637 -186043795 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 2 670 348 107 0 0 chr1 11151637 11151670 -186043762 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 670 307 268 134 42 chr1 11151670 11151908 -186043524 - Lx7 LINE L1 -102 7594 7335 2 670 180 111 0 0 chr1 11151994 11152021 -186043411 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 670 798 224 68 97 chr1 11152678 11153029 -186042403 + Lx7 LINE L1 7356 7696 0 2 670 231 392 0 0 chr1 11153089 11153163 -186042269 - L4 LINE RTE -170 1859 1786 2 670 2215 167 49 12 chr1 11153209 11153615 -186041817 - MTC LTR MaLR 0 421 1 2 670 441 0 0 0 chr1 11153776 11153825 -186041607 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 670 595 333 133 30 chr1 11153846 11154214 -186041218 - Lx9 LINE L1 -209 7435 7030 2 670 357 62 0 0 chr1 11154714 11154762 -186040670 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 670 607 316 23 12 chr1 11154779 11154952 -186040480 - B3A SINE B2 -17 181 7 2 670 258 333 47 9 chr1 11154985 11155091 -186040341 - MIRb SINE MIR -97 171 62 2 670 1807 177 109 3 chr1 11155272 11155640 -186039792 + MTB_Mm LTR MaLR 1 407 0 2 670 497 252 36 9 chr1 11155640 11155752 -186039680 + B1_Mur1 SINE Alu 34 148 -1 2 670 1636 242 108 38 chr1 11156849 11156949 -186038483 + Lx6 LINE L1 6788 6879 -581 2 670 297 0 0 0 chr1 11156949 11156982 -186038450 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 670 405 0 0 0 chr1 11156982 11157026 -186038406 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 670 1636 242 108 38 chr1 11157026 11157397 -186038035 + Lx6 LINE L1 6880 7292 -168 2 670 803 51 246 0 chr1 11157406 11157524 -186037908 + B1_Mus1 SINE Alu 1 147 -1 2 670 243 79 0 0 chr1 11157784 11157822 -186037610 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2 670 22 70 0 0 chr1 11157951 11157994 -186037438 + AT_rich Low_complexity Low_complexity 1 43 0 2 670 454 226 67 30 chr1 11161128 11161266 -186034166 + B1F1 SINE Alu 1 140 -9 2 670 243 0 0 0 chr1 11161623 11161650 -186033782 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2 670 243 282 146 0 chr1 11162110 11162220 -186033212 - Lx6 LINE L1 -26 7434 7309 2 670 1317 172 45 4 chr1 11162219 11162487 -186032945 - Lx5 LINE L1 -1185 5865 5587 2 670 9153 174 135 28 chr1 11162510 11162618 -186032814 - Lx5 LINE L1 -1712 4168 4055 2 670 387 0 0 0 chr1 11162618 11162661 -186032771 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 2 670 9153 174 135 28 chr1 11162661 11163129 -186032303 - Lx5 LINE L1 -1826 4054 3495 2 670 244 0 0 53 chr1 11163129 11163167 -186032265 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 670 9153 174 135 28 chr1 11163167 11164486 -186030946 - Lx5 LINE L1 -2386 3494 2164 2 670 612 0 0 0 chr1 11164486 11164554 -186030878 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 670 9153 174 135 28 chr1 11164554 11164630 -186030802 - Lx5 LINE L1 -3717 2163 2061 2 670 333 125 0 0 chr1 11164630 11164686 -186030746 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 670 9153 174 135 28 chr1 11164686 11164744 -186030688 - Lx5 LINE L1 -3820 2060 1950 2 670 414 0 0 0 chr1 11164744 11164790 -186030642 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 670 9153 174 135 28 chr1 11164790 11165081 -186030351 - Lx5 LINE L1 -3931 1949 1603 2 670 3059 219 63 18 chr1 11165060 11165832 -186029600 - Lx5 LINE L1 -6625 1103 297 2 670 580 324 73 0 chr1 11167403 11167607 -186027825 - MER2 DNA MER2_type 0 345 127 2 670 348 370 97 48 chr1 11168825 11169115 -186026317 - MLT1I LTR MaLR -49 362 59 2 670 333 68 0 0 chr1 11169207 11169251 -186026181 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2 670 246 236 0 98 chr1 11170198 11170259 -186025173 - tRNA-Ala-GCY_ tRNA tRNA -18 57 3 2 670 517 293 31 25 chr1 11171210 11171371 -186024061 - RMER15 LTR ERVL -115 460 299 2 670 425 265 139 56 chr1 11172611 11172791 -186022641 - MLT1B LTR MaLR -186 204 10 2 670 2622 75 0 14 chr1 11173958 11174324 -186021108 - L1Md_F2 LINE L1 0 6582 6222 2 670 234 0 0 0 chr1 11175310 11175336 -186020096 + (T)n Simple_repeat Simple_repeat 1 26 0 2 670 220 250 17 0 chr1 11175882 11175942 -186019490 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 670 342 152 0 0 chr1 11176115 11176174 -186019258 + A-rich Low_complexity Low_complexity 1 59 0 2 670 478 337 67 17 chr1 11177324 11177502 -186017930 + MER20 DNA MER1_type 27 213 -6 2 670 3416 59 0 11 chr1 11178307 11178755 -186016677 - L1Md_F2 LINE L1 -10 6572 6130 2 670 6143 62 16 1 chr1 11178755 11179276 -186016156 + L1Md_F2 LINE L1 5036 5557 -326 2 670 5759 73 17 4 chr1 11179276 11180044 -186015388 + L1Md_F2 LINE L1 5804 6581 -1 2 670 6143 55 0 2 chr1 11180044 11180644 -186014788 + L1Md_F2 LINE L1 5558 6168 -414 2 670 204 40 0 0 chr1 11181597 11181622 -186013810 + (A)n Simple_repeat Simple_repeat 1 25 0 2 670 470 315 127 9 chr1 11181631 11181852 -186013580 - RMER15 LTR ERVL -52 523 277 2 670 1108 107 6 11 chr1 11182081 11182261 -186013171 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 2 670 809 155 7 0 chr1 11184813 11184961 -186010471 + T-rich Low_complexity Low_complexity 2 150 0 2 670 235 374 0 21 chr1 11184965 11185058 -186010374 - PB1 SINE Alu -8 119 29 2 670 383 261 69 0 chr1 11185628 11185758 -186009674 - B1F SINE Alu -10 139 1 2 670 299 65 22 0 chr1 11186207 11186253 -186009179 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 670 294 253 23 81 chr1 11187096 11187182 -186008250 - ID4_ SINE ID 0 83 3 2 670 715 286 79 31 chr1 11188169 11188461 -186006971 - Lx8 LINE L1 -147 7326 7021 2 670 808 216 0 0 chr1 11188629 11188768 -186006664 + B1_Mur2 SINE Alu 6 144 -5 2 670 466 213 28 0 chr1 11188801 11188942 -186006490 - Lx9 LINE L1 -22 7622 7478 2 670 205 262 82 0 chr1 11188988 11189049 -186006383 - MIRm SINE MIR -3 273 208 2 670 208 179 0 25 chr1 11189072 11189112 -186006320 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 2 670 2506 216 73 3 chr1 11189114 11189719 -186005713 - Lx9 LINE L1 -257 7387 6741 2 670 509 191 235 0 chr1 11189761 11189876 -186005556 - B1_Mur2 SINE Alu -7 142 1 2 670 449 281 245 14 chr1 11191311 11191658 -186003774 + L1MB7 LINE L1 5265 5691 -487 2 670 588 173 282 12 chr1 11191658 11191828 -186003604 + B3 SINE B2 1 216 0 2 670 411 346 76 71 chr1 11191886 11192065 -186003367 + L1MB7 LINE L1 5735 5900 -284 2 670 228 35 0 0 chr1 11192065 11192094 -186003338 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 670 411 346 76 71 chr1 11192094 11192362 -186003070 + L1MB7 LINE L1 5901 6184 0 2 670 286 200 111 0 chr1 11192445 11192535 -186002897 + Lx9 LINE L1 7409 7508 -136 2 670 338 100 0 16 chr1 11192637 11192698 -186002734 + (CATA)n Simple_repeat Simple_repeat 4 63 0 2 670 398 290 123 79 chr1 11192946 11193034 -186002398 + B4A SINE B4 1 81 -211 2 670 369 0 0 0 chr1 11193034 11193075 -186002357 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 670 398 290 123 79 chr1 11193075 11193263 -186002169 + B4A SINE B4 82 289 -3 2 670 195 303 12 73 chr1 11194724 11194806 -186000626 - L2b LINE L2 -5 3370 3294 2 670 1065 304 66 53 chr1 11195052 11195409 -186000023 - L1MC LINE L1 -1259 4887 4549 2 670 3113 41 15 5 chr1 11195409 11195801 -185999631 + MTA_Mm LTR MaLR 1 396 0 2 670 1065 304 66 53 chr1 11195801 11196472 -185998960 - L1MC LINE L1 -1598 4548 3847 2 670 327 274 10 0 chr1 11196873 11196975 -185998457 + CT-rich Low_complexity Low_complexity 2 104 0 2 670 267 214 52 35 chr1 11197976 11198034 -185997398 - RMER21B LTR ERV1 -125 717 659 2 670 613 241 179 50 chr1 11198060 11198300 -185997132 - RMER21B LTR ERV1 -275 567 297 2 670 1625 136 20 73 chr1 11199004 11199306 -185996126 + ORR1A4 LTR MaLR 1 286 -43 2 670 462 271 9 9 chr1 11199479 11199587 -185995845 + PB1D10 SINE Alu 2 109 -8 2 670 525 165 0 0 chr1 11200365 11200456 -185994976 + B1_Mus2 SINE Alu 47 137 -10 2 670 243 0 0 0 chr1 11200456 11200483 -185994949 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 670 210 378 30 49 chr1 11201251 11201415 -185994017 + MER5B DNA MER1_type 18 178 0 2 670 181 312 109 84 chr1 11202417 11202536 -185992896 - L2 LINE L2 -2035 1384 1263 2 670 29 28 0 0 chr1 11203020 11203056 -185992376 + AT_rich Low_complexity Low_complexity 1 36 0 2 670 27 0 0 0 chr1 11203585 11203612 -185991820 + AT_rich Low_complexity Low_complexity 1 27 0 2 670 210 71 0 0 chr1 11204249 11204277 -185991155 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 670 283 281 132 0 chr1 11204352 11204473 -185990959 - B1F SINE Alu 0 149 13 2 670 3037 72 0 7 chr1 11204992 11205397 -185990035 - L1Md_F2 LINE L1 0 6582 6181 2 670 1478 82 0 14 chr1 11206286 11206496 -185988936 + L1Md_F2 LINE L1 6376 6582 0 2 670 624 262 45 58 chr1 11206829 11207072 -185988360 - RLTR16 LTR ERVK -265 240 1 2 670 2172 112 245 33 chr1 11210123 11210145 -185985287 - RLTR31A_Mm LTR ERVK 0 584 554 2 670 441 0 0 0 chr1 11210145 11210194 -185985238 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 670 2172 112 245 33 chr1 11210194 11210653 -185984779 - RLTR31A_Mm LTR ERVK -31 553 1 2 670 6561 195 55 37 chr1 11210655 11212848 -185982584 - RMER3D-int LTR ERVK -2 2840 141 2 670 342 0 0 0 chr1 11212907 11212945 -185982487 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 670 2354 151 156 19 chr1 11213013 11213033 -185982399 - RLTR31A_Mm LTR ERVK 0 584 559 2 670 286 22 43 21 chr1 11213033 11213080 -185982352 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 670 2354 151 156 19 chr1 11213080 11213573 -185981859 - RLTR31A_Mm LTR ERVK -26 558 2 2 670 347 60 0 20 chr1 11214532 11214583 -185980849 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 670 848 152 0 68 chr1 11214656 11214804 -185980628 + B1_Mus2 SINE Alu 1 138 -9 3 670 243 0 0 0 chr1 11214806 11214833 -185980599 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 670 815 251 81 92 chr1 11215238 11215685 -185979747 + RMER10A LTR ERVL 1 442 0 3 670 532 320 67 114 chr1 11216564 11216984 -185978448 + RMER10A LTR ERVL 18 417 -25 3 670 930 183 147 0 chr1 11217595 11217792 -185977640 - URR1A DNA MER1_type 0 226 1 3 670 541 295 107 40 chr1 11218741 11219094 -185976338 - MTE2a LTR MaLR 0 379 58 3 670 349 277 72 0 chr1 11219228 11219311 -185976121 + ORR1E LTR MaLR 1 89 -270 3 670 691 148 35 69 chr1 11219375 11219520 -185975912 + URR1B DNA MER1_type 86 225 0 3 670 451 242 60 82 chr1 11219520 11219870 -185975562 + ORR1E LTR MaLR 94 367 -3 3 670 895 284 129 18 chr1 11220103 11220443 -185974989 + MER44C DNA MER2_type 4 381 -352 3 670 366 309 76 103 chr1 11220474 11220737 -185974695 + MER44C DNA MER2_type 478 733 0 3 670 2127 154 45 28 chr1 11220794 11221194 -185974238 + MTB_Mm LTR MaLR 1 407 0 3 670 328 233 45 23 chr1 11221421 11221509 -185973923 - MER34A LTR ERV1 -470 101 12 3 670 285 29 0 0 chr1 11222577 11222611 -185972821 + (A)n Simple_repeat Simple_repeat 1 34 0 3 670 492 235 29 0 chr1 11222877 11223047 -185972385 + CT-rich Low_complexity Low_complexity 6 180 0 3 670 181 119 23 23 chr1 11223652 11223695 -185971737 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 670 201 74 0 0 chr1 11223890 11223917 -185971515 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 670 1001 44 82 0 chr1 11224698 11224833 -185970599 + B1_Mm SINE Alu 2 147 0 3 670 29607 102 16 17 chr1 11225208 11231380 -185964052 + L1_Mus1 LINE L1 407 6567 0 3 670 336 293 70 47 chr1 11233253 11233425 -185962007 + RMER15 LTR ERVL 336 511 -64 3 670 216 86 0 0 chr1 11234503 11234538 -185960894 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 3 670 542 294 25 46 chr1 11234542 11234738 -185960694 + B3 SINE B2 2 193 -23 3 670 185 293 16 49 chr1 11236167 11236228 -185959204 - L2c LINE L2 -319 3068 3010 3 670 414 94 0 0 chr1 11236542 11236606 -185958826 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 670 198 0 0 0 chr1 11237655 11237677 -185957755 + (T)n Simple_repeat Simple_repeat 1 22 0 3 670 211 132 26 0 chr1 11238127 11238165 -185957267 + T-rich Low_complexity Low_complexity 3 41 0 3 670 209 91 45 0 chr1 11238187 11238231 -185957201 + (CAGAGA)n Simple_repeat Simple_repeat 4 49 0 3 670 792 263 30 5 chr1 11238870 11239069 -185956363 + B3 SINE B2 1 204 -12 3 670 564 261 161 20 chr1 11240026 11240280 -185955152 - Charlie10 DNA MER1_type -328 2494 2205 3 670 440 337 112 4 chr1 11240412 11240662 -185954770 + B4A SINE B4 2 278 -14 3 670 372 43 0 0 chr1 11240683 11240729 -185954703 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 670 473 296 0 0 chr1 11241438 11241546 -185953886 - ID_B1 SINE B4 0 224 117 3 670 261 233 95 53 chr1 11241552 11241647 -185953785 + L2c LINE L2 3249 3347 -40 3 670 21 0 0 0 chr1 11243356 11243377 -185952055 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 354 169 0 0 chr1 11243725 11243790 -185951642 + (TATG)n Simple_repeat Simple_repeat 4 68 0 3 670 31 26 0 0 chr1 11245350 11245388 -185950044 + AT_rich Low_complexity Low_complexity 1 38 0 3 670 465 331 0 28 chr1 11245405 11245548 -185949884 - B3A SINE B2 -18 180 42 3 670 26 30 0 0 chr1 11246326 11246359 -185949073 + AT_rich Low_complexity Low_complexity 1 33 0 3 670 1180 180 18 0 chr1 11246465 11246687 -185948745 - URR1A DNA MER1_type 0 226 1 3 670 378 107 0 0 chr1 11247385 11247441 -185947991 + (TAA)n Simple_repeat Simple_repeat 1 56 0 3 670 842 158 8 0 chr1 11247681 11247814 -185947618 + B1_Mus1 SINE Alu 3 136 -12 3 670 4257 22 0 35 chr1 11247820 11248331 -185947101 + MT2_Mm LTR ERVL 1 493 0 3 670 38641 16 14 0 chr1 11248331 11253618 -185941814 + MERVL-int LTR ERVL 1 5360 -125 3 670 390 167 46 35 chr1 11253618 11253705 -185941727 + ORR1A3-int LTR MaLR 553 640 -1323 3 670 302 0 0 0 chr1 11253705 11253743 -185941689 + MERVL-int LTR ERVL 5448 5485 0 3 670 4257 22 0 35 chr1 11253743 11254254 -185941178 + MT2_Mm LTR ERVL 1 493 0 3 670 204 40 0 0 chr1 11255569 11255594 -185939838 + (T)n Simple_repeat Simple_repeat 1 25 0 3 670 274 344 62 8 chr1 11257716 11257845 -185937587 - L2a LINE L2 -304 3122 2987 3 670 334 172 93 41 chr1 11259252 11259349 -185936083 + MLT1A1 LTR MaLR 295 396 -12 3 670 183 192 115 0 chr1 11260786 11260838 -185934594 + L3 LINE CR1 3540 3597 -892 3 670 23 33 0 0 chr1 11261904 11261934 -185933498 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 234 264 121 0 chr1 11262364 11262455 -185932977 - MLT2B5 LTR ERVL -613 104 3 3 670 712 138 104 37 chr1 11263487 11263622 -185931810 + B1_Mus1 SINE Alu 2 145 -3 3 670 203 79 26 0 chr1 11264040 11264078 -185931354 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 3 670 279 266 12 12 chr1 11265188 11265268 -185930164 - ID4_ SINE ID -2 81 2 3 670 299 170 0 0 chr1 11265769 11265816 -185929616 + U4 snRNA snRNA 1 47 -98 3 670 769 271 37 9 chr1 11266231 11266447 -185928985 - LTRIS4 LTR ERV1 0 507 286 3 670 235 256 112 83 chr1 11266752 11266916 -185928516 - MIR SINE MIR -17 251 75 3 670 297 330 126 34 chr1 11266940 11267147 -185928285 - MIRb SINE MIR -17 251 26 3 670 38 0 0 0 chr1 11267734 11267772 -185927660 + AT_rich Low_complexity Low_complexity 1 38 0 3 670 563 251 74 37 chr1 11267843 11268033 -185927399 - RLTR41 LTR ERV1 0 446 250 3 670 186 103 0 0 chr1 11269343 11269372 -185926060 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 670 207 0 0 0 chr1 11269374 11269397 -185926035 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 670 317 24 24 0 chr1 11269756 11269798 -185925634 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 670 578 250 163 22 chr1 11270108 11270476 -185924956 - Arthur1 DNA Tip100 -50 3897 3478 3 670 765 346 87 42 chr1 11270522 11271028 -185924404 - Arthur1 DNA Tip100 -3390 557 29 3 670 548 293 43 92 chr1 11271128 11271432 -185924000 + B4 SINE B4 1 289 -3 3 671 315 287 159 44 chr1 11272581 11272694 -185922738 + B1F SINE Alu 1 126 -23 3 671 25 0 0 0 chr1 11273395 11273420 -185922012 + AT_rich Low_complexity Low_complexity 1 25 0 3 671 192 77 0 0 chr1 11273563 11273589 -185921843 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 671 7342 91 39 89 chr1 11273592 11274627 -185920805 - Lx3B LINE L1 -4 6969 6019 3 671 405 0 0 0 chr1 11274627 11274672 -185920760 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 671 7342 91 39 89 chr1 11274672 11275001 -185920431 - Lx3B LINE L1 -955 6018 5674 3 671 278 110 26 40 chr1 11276859 11276935 -185918497 + CT-rich Low_complexity Low_complexity 4 78 0 3 671 334 290 9 18 chr1 11277352 11277461 -185917971 - PB1D9 SINE Alu -8 112 5 3 671 297 151 0 0 chr1 11277592 11277645 -185917787 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 671 207 302 74 19 chr1 11279664 11279772 -185915660 + L2c LINE L2 3040 3153 -234 3 671 534 103 0 0 chr1 11279958 11280036 -185915396 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 3 671 240 111 0 0 chr1 11280538 11280583 -185914849 + (A)n Simple_repeat Simple_repeat 1 45 0 3 671 181 268 0 0 chr1 11280936 11280977 -185914455 - L2b LINE L2 -1 3374 3334 3 671 330 343 76 7 chr1 11281150 11281294 -185914138 + HAL1-3A_ME LINE L1 2284 2437 -421 3 671 259 286 0 0 chr1 11282267 11282337 -185913095 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 671 7779 164 42 73 chr1 11282343 11282624 -185912808 - RLTR21 LTR ERVK 0 1572 1305 3 671 405 0 0 0 chr1 11282624 11282669 -185912763 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 671 7779 164 42 73 chr1 11282669 11284009 -185911423 - RLTR21 LTR ERVK -268 1304 2 3 671 228 254 30 60 chr1 11285259 11285326 -185910106 + tRNA-Ala-GCA tRNA tRNA 3 67 -8 3 671 1722 254 65 93 chr1 11285300 11286333 -185909099 - RMER17A2 LTR ERVK -9 899 1 3 671 222 239 0 42 chr1 11286334 11286382 -185909050 + ID2 SINE ID 34 79 -4 3 671 230 292 0 0 chr1 11286395 11286460 -185908972 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 671 824 197 131 0 chr1 11286577 11286775 -185908657 + URR1A DNA MER1_type 1 224 -2 3 671 1079 189 41 5 chr1 11287341 11287559 -185907873 + URR1A DNA MER1_type 1 226 0 3 671 23 78 0 0 chr1 11288837 11288888 -185906544 + AT_rich Low_complexity Low_complexity 1 51 0 3 671 483 18 0 0 chr1 11289756 11289812 -185905620 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 671 23 0 0 0 chr1 11290310 11290333 -185905099 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 625 263 61 31 chr1 11291094 11291290 -185904142 + ID_B1 SINE B4 2 203 -21 3 671 475 271 44 15 chr1 11291179 11291314 -185904118 + B1F SINE Alu 10 148 -1 3 671 265 322 28 31 chr1 11292550 11292722 -185902710 - MTEb LTR MaLR -4 375 201 3 671 763 213 7 0 chr1 11294766 11294902 -185900530 + ETnERV2-int LTR ERVK 7066 7202 -204 3 671 405 0 0 0 chr1 11295352 11295397 -185900035 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 671 360 274 165 17 chr1 11295462 11295577 -185899855 + B1F SINE Alu 18 149 0 3 671 201 229 0 0 chr1 11295616 11295664 -185899768 + A-rich Low_complexity Low_complexity 1 48 0 3 671 12284 156 286 37 chr1 11296333 11299345 -185896087 + Lx5 LINE L1 918 4985 -892 3 671 1191 48 7 0 chr1 11299345 11299492 -185895940 + B1_Mus1 SINE Alu 1 148 0 3 671 12284 176 169 28 chr1 11299492 11301507 -185893925 + Lx5 LINE L1 4986 6999 -1 3 671 284 320 72 17 chr1 11302404 11302568 -185892864 + MIRb SINE MIR 56 232 -36 3 671 1035 312 75 55 chr1 11303835 11303905 -185891527 + L1_Mur3 LINE L1 3175 3245 -2898 3 671 405 0 0 0 chr1 11303905 11303950 -185891482 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 671 1320 280 94 40 chr1 11303950 11304620 -185890812 + L1_Mur3 LINE L1 3246 3928 -2215 3 671 681 13 0 0 chr1 11304620 11304698 -185890734 + (TTTTC)n Simple_repeat Simple_repeat 2 79 0 3 671 1178 62 0 0 chr1 11304702 11304848 -185890584 - B1_Mus1 SINE Alu 0 148 3 3 671 1320 276 96 38 chr1 11304848 11305027 -185890405 + L1_Mur3 LINE L1 3902 4087 -1793 3 671 2005 151 42 84 chr1 11305068 11305473 -185889959 - RLTR9C LTR ERVK 0 393 6 4 671 323 287 111 77 chr1 11305477 11305775 -185889657 + L1_Mur3 LINE L1 4131 4446 -1440 3 671 298 20 235 0 chr1 11305839 11305890 -185889542 - L1_Mur2 LINE L1 -1652 4225 4163 4 671 816 135 0 0 chr1 11305881 11306022 -185889410 + L1_Mur1 LINE L1 4196 4336 -1550 4 671 619 305 121 25 chr1 11306129 11306527 -185888905 - MT2A LTR ERVL -13 541 86 4 671 416 281 117 0 chr1 11306462 11306590 -185888842 - MTEa LTR MaLR -236 143 1 4 671 22 56 0 0 chr1 11306782 11306818 -185888614 + AT_rich Low_complexity Low_complexity 1 36 0 4 671 287 250 236 4 chr1 11306994 11307219 -185888213 - L1MA8 LINE L1 -2 6310 6034 4 671 210 37 0 0 chr1 11307253 11307280 -185888152 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 671 234 0 0 0 chr1 11307287 11307313 -185888119 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 671 394 259 65 0 chr1 11307353 11307528 -185887904 - L1MA8 LINE L1 -446 5845 5649 4 671 977 200 95 0 chr1 11307859 11308049 -185887383 - B3 SINE B2 -8 208 1 4 671 1008 119 0 0 chr1 11309153 11309312 -185886120 + (CA)n Simple_repeat Simple_repeat 2 160 0 4 671 1225 111 11 5 chr1 11309647 11309837 -185885595 + B2_Mm1t SINE B2 2 192 -1 4 671 685 274 26 132 chr1 11310467 11310740 -185884692 - RLTR33 LTR ERVK -89 589 346 4 671 339 151 19 19 chr1 11310753 11310861 -185884571 + (TCTG)n Simple_repeat Simple_repeat 3 110 0 4 671 481 223 0 19 chr1 11310861 11310966 -185884466 - RLTR33 LTR ERVK -401 277 175 4 671 189 0 0 0 chr1 11312007 11312028 -185883404 + (T)n Simple_repeat Simple_repeat 1 21 0 4 671 26 0 0 0 chr1 11313267 11313293 -185882139 + AT_rich Low_complexity Low_complexity 1 26 0 4 671 185 100 80 0 chr1 11314458 11314508 -185880924 + GA-rich Low_complexity Low_complexity 2 55 0 4 671 371 233 39 0 chr1 11314852 11314955 -185880477 - RodERV21-int LTR ERV1 -198 4793 4687 4 671 908 338 39 84 chr1 11314951 11315799 -185879633 - RodERV21-int LTR ERV1 -1361 3630 2821 4 671 331 202 8 32 chr1 11316191 11316297 -185879135 - RodERV21-int LTR ERV1 -1319 5772 5675 4 671 381 314 57 38 chr1 11316961 11317276 -185878156 - RodERV21-int LTR ERV1 -3185 3906 3586 4 671 5303 265 12 31 chr1 11317349 11318891 -185876541 - RodERV21-int LTR ERV1 -2224 2767 1256 4 671 292 247 87 0 chr1 11320016 11320166 -185875266 - Lx9 LINE L1 -1 7643 7481 4 671 449 270 254 59 chr1 11320224 11320531 -185874901 - RLTR9A LTR ERVK -1 367 1 4 671 228 163 0 0 chr1 11320661 11320704 -185874728 + T-rich Low_complexity Low_complexity 1 43 0 4 671 6514 113 26 9 chr1 11320712 11322363 -185873069 - L1_Mus3 LINE L1 0 6638 4952 4 671 11515 96 9 4 chr1 11322374 11324458 -185870974 - L1VL2 LINE L1 -896 2719 626 4 671 742 248 0 29 chr1 11324453 11324661 -185870771 - L1VL2 LINE L1 -6038 297 96 4 671 512 280 98 65 chr1 11324678 11324953 -185870479 - Lx9 LINE L1 -375 7269 6986 4 671 251 183 32 48 chr1 11325474 11325537 -185869895 - YREP_Mm Unknown Unknown -1499 313 252 4 671 322 294 12 0 chr1 11325495 11325580 -185869852 + PB1D10 SINE Alu 26 111 -6 4 671 27 0 0 0 chr1 11325616 11325643 -185869789 + AT_rich Low_complexity Low_complexity 1 27 0 4 671 812 258 63 12 chr1 11326178 11326433 -185868999 + Tigger7 DNA MER2_type 2134 2401 -90 4 671 215 188 21 0 chr1 11326795 11326843 -185868589 - ID4_ SINE ID -33 50 2 4 671 1164 196 5 0 chr1 11327206 11327430 -185868002 + URR1B DNA MER1_type 1 225 0 4 671 303 244 108 29 chr1 11327915 11328054 -185867378 + LTR48 LTR ERV1 1 150 -637 4 671 951 238 9 14 chr1 11328393 11328610 -185866822 + B3 SINE B2 1 216 0 4 671 1002 125 0 0 chr1 11329015 11329191 -185866241 + (TTCC)n Simple_repeat Simple_repeat 1 176 0 4 671 432 0 0 0 chr1 11329192 11329240 -185866192 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 671 2942 101 46 38 chr1 11329241 11329716 -185865716 - Lx LINE L1 -5 6649 6171 4 671 573 72 0 0 chr1 11329733 11329816 -185865616 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 671 1718 188 9 95 chr1 11330118 11330570 -185864862 - RLTR21 LTR ERVK -863 709 297 4 671 382 292 52 73 chr1 11330587 11330814 -185864618 - RLTR21 LTR ERVK -3 362 141 4 671 992 292 0 39 chr1 11331017 11331277 -185864155 - RLTR21 LTR ERVK -1322 250 1 4 671 333 0 0 0 chr1 11331378 11331415 -185864017 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 671 221 369 20 47 chr1 11331492 11331640 -185863792 - MIRb SINE MIR -16 252 109 4 671 234 0 0 0 chr1 11331874 11331900 -185863532 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 671 25 51 0 0 chr1 11332586 11332625 -185862807 + AT_rich Low_complexity Low_complexity 1 39 0 4 671 23 0 0 0 chr1 11332683 11332706 -185862726 + AT_rich Low_complexity Low_complexity 1 23 0 4 671 958 234 26 0 chr1 11332985 11333177 -185862255 - B3 SINE B2 -5 211 15 4 671 497 236 16 13 chr1 11333206 11333510 -185861922 + CT-rich Low_complexity Low_complexity 1 305 0 4 671 2794 9 0 18 chr1 11333538 11333866 -185861566 + RLTRETN_Mm LTR ERVK 1 322 0 4 671 1630 116 14 11 chr1 11335262 11335541 -185859891 - L1_Mm LINE L1 -2474 3409 3130 4 671 3306 150 13 16 chr1 11335523 11335776 -185859656 - L1VL1 LINE L1 -5672 750 500 4 671 3257 69 2 0 chr1 11335776 11336196 -185859236 + L1_Mus1 LINE L1 6147 6567 0 4 671 3306 150 13 16 chr1 11336196 11336490 -185858942 - L1VL1 LINE L1 -5923 499 205 4 671 324 247 0 24 chr1 11336495 11336578 -185858854 + Tigger9b DNA MER2_type 544 624 0 4 671 738 354 99 18 chr1 11337208 11337643 -185857789 + MER74A LTR ERVL 51 520 -38 4 671 463 144 289 0 chr1 11339512 11339602 -185855830 + Lx9 LINE L1 7133 7248 -396 4 671 307 265 45 39 chr1 11340129 11340338 -185855094 + RLTR18-int LTR ERVK 4137 4270 -1091 4 671 22 0 0 0 chr1 11340353 11340375 -185855057 + AT_rich Low_complexity Low_complexity 1 22 0 4 671 4127 164 148 35 chr1 11340951 11341879 -185853553 - RLTR13D4 LTR ERVK 0 1033 1 4 671 1715 174 56 3 chr1 11342224 11342598 -185852834 + Lx9 LINE L1 7247 7640 -4 4 671 211 201 39 71 chr1 11342666 11342821 -185852611 + (TTATA)n Simple_repeat Simple_repeat 1 150 0 4 671 221 301 138 51 chr1 11343708 11343910 -185851522 + MIRb SINE MIR 34 259 -9 4 671 561 296 171 18 chr1 11344179 11344675 -185850757 - L1MDa LINE L1 -4268 2365 1794 4 671 421 313 164 11 chr1 11344709 11344996 -185850436 - L1MDa LINE L1 -5407 1133 803 4 671 330 374 40 60 chr1 11345083 11345282 -185850150 - L1MDa LINE L1 -5753 787 593 4 671 378 0 0 0 chr1 11346198 11346240 -185849192 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 671 260 314 97 10 chr1 11346866 11346969 -185848463 + PB1D9 SINE Alu 9 120 0 4 671 418 281 147 79 chr1 11348329 11348684 -185846748 - L1MC3 LINE L1 -1565 6220 5842 4 671 448 265 28 42 chr1 11348816 11348958 -185846474 - ID_B1 SINE B4 -1 223 84 4 671 255 45 59 29 chr1 11348991 11349059 -185846373 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 4 671 1183 68 0 0 chr1 11349060 11349207 -185846225 - B1_Mus1 SINE Alu -1 147 1 4 671 1276 293 33 27 chr1 11349212 11349979 -185845453 - L1MC3 LINE L1 -50 6250 5483 4 671 353 240 116 62 chr1 11349989 11350118 -185845314 + MLT1B LTR MaLR 125 260 -130 4 671 534 272 0 8 chr1 11350113 11350239 -185845193 + B3 SINE B2 87 211 -5 4 671 249 301 18 69 chr1 11350242 11350460 -185844972 - L1MD LINE L1 -1102 5044 4838 4 671 714 208 179 6 chr1 11350950 11351129 -185844303 + B3 SINE B2 1 210 -6 4 671 544 310 122 15 chr1 11351627 11351889 -185843543 + RMER5 LTR ERV1 235 524 -10 4 671 480 175 0 118 chr1 11352841 11352977 -185842455 - Lx LINE L1 -4 6650 6531 4 671 9005 169 22 16 chr1 11353379 11355126 -185840306 - L1_Mur2 LINE L1 0 5877 4120 4 671 9138 132 8 15 chr1 11355979 11357571 -185837861 - Lx2 LINE L1 -1 6996 5414 4 671 2616 48 158 0 chr1 11357571 11357926 -185837506 - IAPLTR2a LTR ERVK 0 411 1 4 671 6159 56 35 8 chr1 11357928 11358733 -185836699 - IAPEz-int LTR ERVK -2 6479 5653 4 671 2683 67 0 3 chr1 11358728 11359071 -185836361 - IAPEz-int LTR ERVK -4781 1700 1359 4 671 3343 122 36 57 chr1 11359071 11359889 -185835543 - IAPEz-int LTR ERVK -5819 662 9 4 671 3144 47 25 0 chr1 11359890 11360291 -185835141 - IAPLTR2a LTR ERVK 0 411 1 4 671 13309 166 21 52 chr1 11360292 11363148 -185832284 - Lx2 LINE L1 -465 5412 2646 4 671 2756 154 102 0 chr1 11363623 11364104 -185831328 + L1Md_F LINE L1 388 917 -5699 4 671 9039 80 4 1 chr1 11364104 11365468 -185829964 + L1Md_F LINE L1 1108 2475 -3408 4 671 15651 89 9 9 chr1 11365465 11368789 -185826643 - L1Md_F LINE L1 -2393 3490 168 4 671 1774 149 18 9 chr1 11368786 11369112 -185826320 - MusHAL1 LINE L1 -2383 329 1 4 671 2153 220 115 24 chr1 11369105 11369654 -185825778 - L1VL4 LINE L1 -5513 789 191 4 671 261 0 0 0 chr1 11369741 11369770 -185825662 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 671 1119 58 0 0 chr1 11369770 11369908 -185825524 - B1_Mm SINE Alu -9 138 1 4 671 252 317 47 70 chr1 11370581 11370710 -185824722 + MTEb LTR MaLR 1 126 -253 4 671 4592 171 26 83 chr1 11370879 11371982 -185823450 - RMER12 LTR ERVK -155 1417 1 4 671 445 242 56 16 chr1 11372426 11372552 -185822880 + MTEb LTR MaLR 249 379 0 4 671 261 248 131 22 chr1 11374213 11374455 -185820977 + L1_Mm LINE L1 4677 4952 -1194 4 671 31 44 0 0 chr1 11375397 11375442 -185819990 + AT_rich Low_complexity Low_complexity 1 45 0 4 671 402 305 179 15 chr1 11375525 11375921 -185819511 + L1ME2 LINE L1 5569 6029 -135 4 671 234 0 0 0 chr1 11375946 11375972 -185819460 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 671 350 60 0 0 chr1 11375975 11376025 -185819407 - L1Md_F2 LINE L1 -11 6571 6522 4 671 614 303 60 93 chr1 11376041 11376405 -185819027 + ORR1E LTR MaLR 3 354 -5 4 671 463 226 15 0 chr1 11376405 11376538 -185818894 + (CATATA)n Simple_repeat Simple_repeat 4 138 0 4 671 25 51 0 0 chr1 11376584 11376623 -185818809 + AT_rich Low_complexity Low_complexity 1 39 0 4 671 236 208 13 53 chr1 11376881 11376957 -185818475 + L1MEf LINE L1 1596 1668 -4574 4 671 243 125 0 0 chr1 11377016 11377056 -185818376 + (T)n Simple_repeat Simple_repeat 1 40 0 4 671 4400 160 39 8 chr1 11377059 11377858 -185817574 - Lx LINE L1 -4 6650 5827 4 671 3013 78 2 0 chr1 11377869 11378268 -185817164 - MTB LTR MaLR 0 400 1 4 671 346 351 166 17 chr1 11378292 11378582 -185816850 + L1MEf LINE L1 2490 2822 -3324 4 671 642 195 102 12 chr1 11378715 11378881 -185816551 - B2_Mm2 SINE B2 -14 181 1 4 671 184 244 91 68 chr1 11379112 11379200 -185816232 + L3 LINE CR1 133 222 -4267 4 671 1647 127 86 74 chr1 11379623 11379790 -185815642 + L1_Mus3 LINE L1 760 909 -5748 4 671 3122 81 2 5 chr1 11379790 11380212 -185815220 - BGLII LTR ERVK 0 421 1 4 671 1647 127 86 74 chr1 11380212 11380383 -185815049 + L1_Mus3 LINE L1 910 1102 -5555 4 671 1924 92 148 0 chr1 11380383 11380721 -185814711 + RLTR47_MM LTR ERV1 59 446 -86 4 671 17725 162 95 23 chr1 11380767 11385656 -185809776 + L1_Mus3 LINE L1 1112 6412 -226 4 671 747 88 35 9 chr1 11385658 11385773 -185809659 - RLTR9B LTR ERVK -319 118 1 4 671 281 170 0 0 chr1 11385805 11385852 -185809580 - RMER16-int LTR ERVK -29 7377 7331 4 671 9768 201 74 58 chr1 11386052 11387557 -185807875 - RMER16-int LTR ERVK -1341 4065 2524 4 671 193 29 29 29 chr1 11387557 11387592 -185807840 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 671 842 121 73 0 chr1 11387597 11387721 -185807711 - B1_Mus1 SINE Alu -14 134 2 5 671 9768 181 59 44 chr1 11387721 11387821 -185807611 - RMER16-int LTR ERVK -2435 2971 2862 4 671 465 103 0 0 chr1 11387821 11387889 -185807543 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 671 12861 154 78 50 chr1 11387889 11389085 -185806347 - ETnERV2-int LTR ERVK -3474 3932 2612 5 671 225 0 0 0 chr1 11389085 11389110 -185806322 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 671 12861 154 78 50 chr1 11389110 11390684 -185804748 - ETnERV2-int LTR ERVK -4795 2611 1068 5 671 369 136 0 32 chr1 11391021 11391111 -185804321 - B1_Mm SINE Alu -27 122 39 5 671 2209 128 20 60 chr1 11391124 11391523 -185803909 - RLTR9A2 LTR ERVK 0 383 1 5 671 345 284 67 11 chr1 11392276 11392365 -185803067 + B3A SINE B2 1 94 -104 5 671 243 0 0 0 chr1 11392368 11392395 -185803037 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 671 243 0 0 0 chr1 11392395 11392421 -185803011 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 671 1216 245 152 6 chr1 11393492 11393841 -185801591 + MTD LTR MaLR 6 405 -14 5 671 2833 75 29 27 chr1 11393948 11394358 -185801074 - RLTR10A LTR ERVK 0 411 1 5 671 276 179 73 49 chr1 11394431 11394513 -185800919 + MER57A-int LTR ERV1 5808 5891 -296 5 671 894 168 175 21 chr1 11394988 11395182 -185800250 - URR1B DNA MER1_type -1 224 1 5 671 479 235 20 0 chr1 11395213 11395315 -185800117 - MTE2b LTR MaLR -251 128 25 5 671 362 352 93 27 chr1 11395861 11396086 -185799346 - MIR SINE MIR -21 241 2 5 671 381 278 33 16 chr1 11396248 11396431 -185799001 + L1MEd LINE L1 32 217 -5902 5 671 454 270 75 104 chr1 11397474 11397925 -185797507 - L1MB8 LINE L1 -11 6167 5730 5 671 457 322 93 53 chr1 11398048 11398274 -185797158 - B4A SINE B4 0 292 58 5 671 547 267 120 28 chr1 11398278 11398614 -185796818 - L1_Mur2 LINE L1 -213 5664 5342 5 671 449 326 154 5 chr1 11399886 11400074 -185795358 + Tigger5 DNA MER2_type 11 226 -2180 5 671 30 27 0 0 chr1 11400161 11400198 -185795234 + AT_rich Low_complexity Low_complexity 1 37 0 5 671 214 333 69 43 chr1 11400494 11400610 -185794822 + MIR SINE MIR 29 147 -121 5 671 509 274 45 42 chr1 11401268 11401453 -185793979 - B3A SINE B2 -8 185 2 5 672 414 0 0 0 chr1 11405035 11405081 -185790351 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 672 237 388 7 7 chr1 11406633 11406781 -185788651 + B1F1 SINE Alu 1 148 -1 5 672 427 259 49 49 chr1 11407276 11407398 -185788034 - B1_Mur2 SINE Alu -27 122 1 5 672 1150 75 7 0 chr1 11408935 11409081 -185786351 - B1_Mus2 SINE Alu 0 147 1 5 672 279 0 0 0 chr1 11409471 11409502 -185785930 + (A)n Simple_repeat Simple_repeat 1 31 0 5 672 336 160 91 50 chr1 11409533 11409632 -185785800 + B2_Mm2 SINE B2 90 192 -3 5 672 416 330 136 36 chr1 11409798 11410379 -185785053 + L1MC4 LINE L1 6710 7348 -694 5 672 23 33 0 0 chr1 11411056 11411086 -185784346 + AT_rich Low_complexity Low_complexity 1 30 0 5 672 457 331 36 29 chr1 11412188 11412328 -185783104 + RSINE1 SINE B4 8 148 -17 5 672 207 226 19 0 chr1 11412430 11412483 -185782949 + GA-rich Low_complexity Low_complexity 2 55 0 5 672 653 343 28 5 chr1 11413450 11413664 -185781768 + ID_B1 SINE B4 6 224 0 5 672 246 158 72 21 chr1 11413709 11413848 -185781584 + (TA)n Simple_repeat Simple_repeat 1 146 0 5 672 23 0 0 0 chr1 11413875 11413898 -185781534 + AT_rich Low_complexity Low_complexity 1 23 0 5 672 501 298 68 4 chr1 11413904 11414140 -185781292 - Lx7 LINE L1 -1834 5862 5612 5 672 209 321 0 0 chr1 11414195 11414251 -185781181 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 672 243 156 0 0 chr1 11414540 11414585 -185780847 - L1MA5 LINE L1 -46 6254 6210 5 672 1884 115 45 18 chr1 11414630 11414966 -185780466 + Lx2 LINE L1 6583 6927 -70 5 672 2913 160 23 102 chr1 11414967 11415147 -185780285 - L1_Mur3 LINE L1 -3632 2248 2077 5 672 201 39 0 0 chr1 11415147 11415173 -185780259 + (CTG)n Simple_repeat Simple_repeat 1 26 0 5 672 2913 160 23 102 chr1 11415173 11415763 -185779669 - L1_Mur3 LINE L1 -3804 2076 1539 5 672 6670 94 28 4 chr1 11415780 11416719 -185778713 - Lx3_Mus LINE L1 -8 7001 6041 5 672 12130 152 10 8 chr1 11418554 11420774 -185774658 + L1_Mur2 LINE L1 3465 5688 -189 5 672 272 323 10 0 chr1 11422142 11422241 -185773191 - ERVL-B4-int LTR ERVL -2289 3425 3326 5 672 405 0 0 0 chr1 11422683 11422728 -185772704 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 672 1697 197 22 8 chr1 11423099 11423532 -185771900 + MYSERV6-int LTR ERVK 8544 8905 -54 5 672 606 301 18 26 chr1 11423546 11423819 -185771613 + RLTR15 LTR ERVK 16 286 -73 5 672 712 258 213 9 chr1 11424761 11425097 -185770335 + MTC LTR MaLR 1 405 -14 5 672 548 296 42 19 chr1 11425485 11425807 -185769625 + MTEb LTR MaLR 21 378 -1 5 672 478 347 15 30 chr1 11425807 11426003 -185769429 + B4A SINE B4 38 230 -62 5 672 227 269 0 9 chr1 11426093 11426202 -185769230 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 672 301 350 119 11 chr1 11426378 11426563 -185768869 - LTR50 LTR ERVL -590 205 1 5 672 401 381 11 60 chr1 11427676 11427860 -185767572 + B4A SINE B4 2 176 -116 5 672 384 22 0 0 chr1 11427924 11427969 -185767463 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 672 8585 72 10 4 chr1 11428286 11430187 -185765245 - L1Md_F2 LINE L1 -12 6570 4658 5 672 7872 125 30 41 chr1 11430542 11431914 -185763518 + L1_Mur2 LINE L1 3956 5325 -552 5 672 1250 20 0 7 chr1 11431914 11432061 -185763371 - B1_Mm SINE Alu 0 147 2 5 672 7872 125 30 41 chr1 11432061 11432166 -185763266 + L1_Mur2 LINE L1 5326 5417 -460 5 672 252 175 0 0 chr1 11433778 11433841 -185761591 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 5 672 3962 198 32 0 chr1 11433876 11434630 -185760802 - Lx5 LINE L1 -1 7049 6272 5 672 222 118 0 0 chr1 11434655 11434689 -185760743 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 5 672 952 56 0 14 chr1 11434734 11434880 -185760552 + (CAAAC)n Simple_repeat Simple_repeat 2 145 0 5 672 479 16 0 0 chr1 11436784 11436847 -185758585 - L1_Mus1 LINE L1 0 6567 6505 5 672 277 260 124 43 chr1 11437370 11437531 -185757901 + L3 LINE CR1 2767 2940 -1549 5 672 577 250 20 53 chr1 11437772 11437924 -185757508 - MTEa LTR MaLR 0 379 233 5 672 427 277 36 71 chr1 11437959 11438056 -185757376 - MTEa LTR MaLR -244 135 35 5 672 955 198 113 5 chr1 11438056 11438259 -185757173 - URR1B DNA MER1_type 0 225 1 5 672 427 277 36 71 chr1 11438259 11438301 -185757131 - MTEa LTR MaLR -345 34 1 5 672 241 316 0 0 chr1 11438577 11438634 -185756798 + L3 LINE CR1 3242 3298 -1191 5 672 305 395 25 0 chr1 11439845 11439964 -185755468 - MER20 DNA MER1_type 0 219 98 5 672 267 103 0 0 chr1 11439987 11440026 -185755406 + (ATG)n Simple_repeat Simple_repeat 1 39 0 5 672 401 256 24 40 chr1 11440247 11440373 -185755059 - MLT1A0 LTR MaLR 0 365 242 5 672 3779 128 89 2 chr1 11443123 11443750 -185751682 - Lx3_Mus LINE L1 0 7009 6328 5 672 1333 152 0 0 chr1 11443754 11443977 -185751455 - L1_Mm LINE L1 -496 5387 5165 5 672 20943 101 20 32 chr1 11443949 11448291 -185747141 - L1_Mur1 LINE L1 -1550 4336 48 5 672 564 188 68 8 chr1 11448294 11448412 -185747020 - MurSatRep1 Unknown Unknown -1868 269 145 5 672 267 215 0 0 chr1 11449911 11449976 -185745456 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 672 1398 256 13 7 chr1 11450295 11450605 -185744827 + MTD LTR MaLR 1 312 -107 5 672 239 319 56 42 chr1 11451157 11451229 -185744203 - ID4 SINE ID -7 76 4 5 672 661 340 77 30 chr1 11451385 11451685 -185743747 - MLT2C1 LTR ERVL 0 397 84 5 672 5162 169 24 11 chr1 11451990 11452928 -185742504 - RMER17B LTR ERVK -8 950 1 5 672 339 369 77 32 chr1 11453251 11453472 -185741960 - MLT1I LTR MaLR -176 235 5 5 672 23 0 0 0 chr1 11453850 11453873 -185741559 + AT_rich Low_complexity Low_complexity 1 23 0 5 672 384 22 0 0 chr1 11454366 11454411 -185741021 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 672 384 22 0 0 chr1 11454412 11454457 -185740975 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 672 255 355 110 33 chr1 11455112 11455357 -185740075 - L2 LINE L2 -461 2958 2695 5 672 798 299 124 20 chr1 11455372 11455993 -185739439 + L1MA5 LINE L1 5391 6088 -212 5 672 560 179 8 0 chr1 11456061 11456178 -185739254 + GA-rich Low_complexity Low_complexity 3 120 0 5 672 282 56 0 0 chr1 11456532 11456568 -185738864 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 672 471 107 0 0 chr1 11456711 11456786 -185738646 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 672 225 65 0 0 chr1 11457060 11457091 -185738341 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 672 1900 169 139 19 chr1 11457108 11457483 -185737949 - RLTR9B2 LTR ERVK 0 420 1 5 672 279 0 0 0 chr1 11457512 11457543 -185737889 + (A)n Simple_repeat Simple_repeat 1 31 0 5 672 7847 60 2 3 chr1 11458141 11459186 -185736246 + L1_Mus1 LINE L1 5524 6567 0 5 672 541 143 19 0 chr1 11459199 11459304 -185736128 - L1_Mur3 LINE L1 -4412 1468 1362 5 672 9562 258 54 76 chr1 11459308 11459757 -185735675 + Lx6 LINE L1 1648 2064 -3813 5 672 390 21 0 0 chr1 11459757 11459804 -185735628 + (CCA)n Simple_repeat Simple_repeat 1 47 0 5 672 9562 258 54 76 chr1 11459804 11462402 -185733030 + Lx6 LINE L1 2065 4679 -1198 5 672 486 0 0 0 chr1 11462402 11462456 -185732976 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 5 672 9562 238 64 35 chr1 11462456 11465207 -185730225 + Lx6 LINE L1 4680 7458 -2 5 672 722 250 101 10 chr1 11465904 11466102 -185729330 + B3 SINE B2 1 216 0 5 672 198 71 0 0 chr1 11468020 11468048 -185727384 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 672 377 276 133 0 chr1 11468108 11468213 -185727219 - B3A SINE B2 -79 119 1 5 672 957 173 56 0 chr1 11468487 11468666 -185726766 - B2_Mm2 SINE B2 -4 191 3 5 672 23 0 0 0 chr1 11468699 11468722 -185726710 + AT_rich Low_complexity Low_complexity 1 23 0 5 672 434 287 17 34 chr1 11469066 11469077 -185726355 - PB1D9 SINE Alu -3 117 107 6 672 1265 43 12 0 chr1 11469077 11469240 -185726192 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 6 672 434 287 17 34 chr1 11469240 11469347 -185726085 - PB1D9 SINE Alu -14 106 1 6 672 27 29 0 0 chr1 11469364 11469398 -185726034 + AT_rich Low_complexity Low_complexity 1 34 0 6 672 423 0 0 0 chr1 11469398 11469445 -185725987 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 672 417 39 0 0 chr1 11469478 11469529 -185725903 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 672 416 267 105 0 chr1 11469559 11469664 -185725768 - RSINE1 SINE B4 -46 119 4 6 672 738 109 0 0 chr1 11470327 11470437 -185724995 + (TTTTC)n Simple_repeat Simple_repeat 1 110 0 6 672 272 292 39 55 chr1 11470770 11470897 -185724535 - IAP-d-int LTR ERVK -17 6525 6401 6 672 32396 75 6 21 chr1 11470897 11472199 -185723233 - L1Md_F2 LINE L1 0 6582 5363 6 672 4724 95 1 18 chr1 11472199 11472876 -185722556 - L1Md_F2 LINE L1 -11 6571 5906 6 672 32396 118 21 27 chr1 11472876 11478246 -185717186 - L1Md_F2 LINE L1 -521 5362 1 6 672 189 0 0 0 chr1 11478460 11478481 -185716951 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 6 672 354 123 0 0 chr1 11479046 11479103 -185716329 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 672 344 312 25 0 chr1 11479282 11479362 -185716070 - B4A SINE B4 -202 90 9 6 672 488 368 101 30 chr1 11479457 11479964 -185715468 + L2 LINE L2 632 1174 -2245 6 672 189 279 33 0 chr1 11480293 11480354 -185715078 + L2a LINE L2 3358 3420 -6 6 672 371 222 8 0 chr1 11480391 11480508 -185714924 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 672 228 264 43 43 chr1 11480764 11480879 -185714553 - L1MA8 LINE L1 -327 5964 5850 6 672 431 283 26 13 chr1 11481128 11481282 -185714150 - L1M2 LINE L1 -2299 3844 3689 6 672 213 39 0 0 chr1 11481289 11481315 -185714117 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 672 606 28 0 0 chr1 11481315 11481386 -185714046 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 672 908 276 47 66 chr1 11481574 11482232 -185713200 - L1M2 LINE L1 -2301 3579 2929 6 672 180 0 0 0 chr1 11482232 11482252 -185713180 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 672 908 291 48 61 chr1 11482252 11482357 -185713075 - L1M2 LINE L1 -3179 2964 2821 6 672 6273 108 31 56 chr1 11482525 11482837 -185712595 - RLTR13C1 LTR ERVK 0 983 704 6 672 2296 120 21 88 chr1 11482837 11483258 -185712174 - RLTR9C LTR ERVK 0 393 1 6 672 6273 108 31 56 chr1 11483258 11483953 -185711479 - RLTR13C1 LTR ERVK -280 703 1 6 672 283 271 110 7 chr1 11483976 11484121 -185711311 + L1MD LINE L1 4528 4687 -1459 6 672 299 374 16 16 chr1 11484191 11484316 -185711116 + B1_Mur3 SINE Alu 1 125 -24 6 672 449 348 75 38 chr1 11484340 11484791 -185710641 + L1MC LINE L1 4759 5226 -920 6 672 483 247 45 25 chr1 11484821 11485020 -185710412 + L1MD LINE L1 5269 5471 -888 6 672 23921 27 0 0 chr1 11485104 11487957 -185707475 + L1MD1 LINE L1 2734 5616 -626 6 672 8095 42 11 0 chr1 11487957 11488941 -185706491 + L1Md_T LINE L1 5588 6582 0 6 672 1432 282 84 37 chr1 11488941 11489338 -185706094 + L1MD1 LINE L1 5617 6050 -192 6 672 390 21 0 0 chr1 11489420 11489467 -185705965 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 672 2412 167 31 36 chr1 11489552 11490000 -185705432 - RLTR41 LTR ERV1 0 446 1 6 672 301 336 26 39 chr1 11490287 11490442 -185704990 + L1MEg LINE L1 1504 1656 -4428 6 672 293 320 77 10 chr1 11490849 11490953 -185704479 + MER21B LTR ERV1 566 676 -187 6 672 1395 276 85 72 chr1 11491293 11491412 -185704020 + RLTR25A LTR ERVK 1 120 -908 6 672 255 61 0 0 chr1 11491412 11491445 -185703987 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 672 3092 150 27 34 chr1 11491445 11492028 -185703404 + RLTR25A LTR ERVK 121 786 -317 6 672 22 35 0 0 chr1 11492399 11492428 -185703004 + AT_rich Low_complexity Low_complexity 1 29 0 6 672 32 26 0 0 chr1 11493049 11493088 -185702344 + AT_rich Low_complexity Low_complexity 1 39 0 6 672 207 0 0 0 chr1 11493533 11493556 -185701876 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 672 5459 92 9 1 chr1 11493804 11494559 -185700873 + Lx3_Mus LINE L1 6249 7009 0 6 672 291 93 0 0 chr1 11494571 11494614 -185700818 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 6 672 285 0 0 0 chr1 11495240 11495277 -185700155 + L1Md_T LINE L1 6534 6570 -12 6 672 21 36 0 0 chr1 11495277 11495305 -185700127 + AT_rich Low_complexity Low_complexity 1 28 0 6 672 1774 274 81 25 chr1 11495433 11496024 -185699408 + Lx9 LINE L1 6608 7231 -413 6 672 213 213 21 0 chr1 11496050 11496097 -185699335 + GA-rich Low_complexity Low_complexity 3 50 0 6 672 432 0 0 0 chr1 11496101 11496149 -185699283 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 672 300 353 57 52 chr1 11496233 11496427 -185699005 + L1M4 LINE L1 2569 2763 -3383 6 672 1060 82 0 64 chr1 11496730 11496887 -185698545 + B1_Mus1 SINE Alu 2 148 0 6 672 563 256 221 48 chr1 11496928 11497240 -185698192 + Lx9 LINE L1 7259 7624 -20 6 672 29 0 0 0 chr1 11497337 11497366 -185698066 + AT_rich Low_complexity Low_complexity 1 29 0 6 672 738 104 15 22 chr1 11497526 11497663 -185697769 + L1_Mus3 LINE L1 6498 6633 -5 6 672 259 379 38 0 chr1 11497893 11498025 -185697407 - MLT2E LTR ERVL -455 173 37 6 672 1821 169 0 60 chr1 11499509 11499856 -185695576 - ORR1A3 LTR MaLR 0 326 1 6 672 898 160 0 0 chr1 11499856 11500000 -185695432 - ORR1A3-int LTR MaLR 0 1963 1820 6 672 5951 159 35 6 chr1 11500000 11500909 -185694523 - ORR1A3-int LTR MaLR -144 1819 890 1 672 294 29 0 0 chr1 11500909 11500944 -185694488 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 672 5951 159 35 6 chr1 11500944 11501104 -185694328 - ORR1A3-int LTR MaLR -1074 889 719 1 672 1141 147 103 0 chr1 11501108 11501312 -185694120 - MT2B LTR ERVL -342 259 35 3 672 296 278 0 43 chr1 11501420 11501514 -185693918 + GA-rich Low_complexity Low_complexity 1 90 0 4 672 954 194 114 0 chr1 11502208 11502409 -185693023 + URR1B DNA MER1_type 2 225 0 5 672 1180 279 66 5 chr1 11502978 11503371 -185692061 + MTD LTR MaLR 1 417 -2 6 672 1971 139 15 58 chr1 11503380 11503723 -185691709 - ORR1A4 LTR MaLR 0 329 2 7 672 485 320 117 48 chr1 11504229 11504484 -185690948 - MLT1E2 LTR MaLR -55 625 300 8 672 277 276 129 30 chr1 11505523 11505601 -185689831 - RLTR20D LTR ERVK -16 562 480 9 672 441 0 0 0 chr1 11505601 11505650 -185689782 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 672 277 276 129 30 chr1 11505650 11505672 -185689760 - RLTR20D LTR ERVK -99 479 452 9 672 913 216 53 45 chr1 11505665 11505908 -185689524 - RLTR20D LTR ERVK -323 245 1 9 672 4015 172 143 27 chr1 11505908 11506705 -185688727 - RMER19B LTR ERVK -12 890 1 1 672 533 15 15 0 chr1 11507555 11507621 -185687811 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 672 324 0 0 0 chr1 11507621 11507656 -185687776 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 672 423 132 0 0 chr1 11508265 11508333 -185687099 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 1 672 1601 101 17 43 chr1 11509159 11509459 -185685973 - Lx3_Mus LINE L1 -711 6298 6007 1 672 3535 187 45 11 chr1 11509449 11510307 -185685125 - Lx4A LINE L1 -63 6995 6021 1 672 503 218 51 36 chr1 11510697 11510892 -185684540 + RMER17C LTR ERVK 79 276 -134 1 672 1507 149 0 0 chr1 11511474 11511722 -185683710 - Lx2B LINE L1 -601 6399 6152 1 672 605 162 0 0 chr1 11511711 11511816 -185683616 + Lx2B LINE L1 6426 6530 -470 1 672 639 66 0 0 chr1 11511827 11511918 -185683514 - RLTRETN_Mm LTR ERVK -231 91 1 1 672 364 44 0 0 chr1 11511918 11511963 -185683469 - RLTR31_Mm LTR ERVK -516 45 1 2 672 3608 48 2 0 chr1 11511985 11512426 -185683006 + L1Md_F2 LINE L1 6141 6582 0 2 672 25 31 0 0 chr1 11512429 11512461 -185682971 + AT_rich Low_complexity Low_complexity 1 32 0 2 672 322 235 128 17 chr1 11512461 11512578 -185682854 + L1M5 LINE L1 4280 4409 -1737 2 672 252 221 0 29 chr1 11512782 11512852 -185682580 + L1MC LINE L1 4760 4827 -1319 2 672 489 267 0 0 chr1 11513113 11513278 -185682154 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 672 623 311 110 31 chr1 11513288 11514217 -185681215 - L1MB4 LINE L1 -115 6065 5062 2 672 372 22 0 0 chr1 11514217 11514262 -185681170 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 672 623 318 75 39 chr1 11514262 11514839 -185680593 - L1MB4 LINE L1 -1085 5061 4464 2 672 23 33 0 0 chr1 11515702 11515732 -185679700 + AT_rich Low_complexity Low_complexity 1 30 0 2 672 257 51 26 0 chr1 11515806 11515845 -185679587 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 672 32 0 0 0 chr1 11515859 11515891 -185679541 + AT_rich Low_complexity Low_complexity 1 32 0 3 672 512 116 0 131 chr1 11516779 11516878 -185678554 - B2_Mm2 SINE B2 -108 87 2 3 672 255 31 0 0 chr1 11517132 11517164 -185678268 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 672 270 0 0 0 chr1 11517371 11517401 -185678031 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 672 1191 115 38 0 chr1 11517585 11517768 -185677664 - B2_Mm2 SINE B2 -4 191 2 3 672 298 266 45 40 chr1 11517775 11517951 -185677481 - L1M4 LINE L1 -1893 4253 4077 3 672 6788 100 19 11 chr1 11518153 11518497 -185676935 - L1_Mus3 LINE L1 -2 6636 6291 3 672 3161 97 11 5 chr1 11518497 11518931 -185676501 - RLTR9B LTR ERVK 0 437 1 3 672 27097 122 6 22 chr1 11518931 11523518 -185671914 - L1_Mus3 LINE L1 -348 6290 1732 3 672 513 57 14 0 chr1 11523518 11523588 -185671844 - B1_Mm SINE Alu -13 134 64 3 672 27097 122 6 22 chr1 11523588 11524988 -185670444 - L1_Mus3 LINE L1 -348 1731 339 3 672 1247 189 36 47 chr1 11524995 11525272 -185670160 - RLTR46 LTR ERVK -5 315 42 3 672 664 123 0 0 chr1 11525283 11525389 -185670043 - IAPEY3-int LTR ERVK -2 7579 7474 4 672 2326 56 20 0 chr1 11525414 11525720 -185669712 - RLTR10-int LTR ERVK -190 1797 1486 4 672 2640 122 57 29 chr1 11525722 11526241 -185669191 - IAPEY3-int LTR ERVK -151 7529 6965 4 672 1318 116 112 0 chr1 11526241 11526465 -185668967 - IAP-d-int LTR ERVK -1287 5255 5007 4 672 715 205 6 6 chr1 11526465 11526622 -185668810 - IAP-d-int LTR ERVK -6039 503 347 4 672 505 118 0 23 chr1 11526616 11526703 -185668729 - IAP-d-int LTR ERVK -6365 177 93 4 672 469 66 70 55 chr1 11526703 11526831 -185668601 + CT-rich Low_complexity Low_complexity 5 134 0 4 672 661 207 66 0 chr1 11526833 11527031 -185668401 - IAPEY3-int LTR ERVK -6935 745 535 4 672 358 252 41 69 chr1 11527082 11527227 -185668205 - IAPEY3-int LTR ERVK -7537 143 3 4 672 1222 204 29 40 chr1 11527237 11527513 -185667919 - RLTR46 LTR ERVK -6 314 42 4 672 812 150 0 0 chr1 11527522 11527649 -185667783 - L1VL1 LINE L1 -6294 128 2 4 672 23 0 0 0 chr1 11527655 11527678 -185667754 + AT_rich Low_complexity Low_complexity 1 23 0 4 672 380 281 154 23 chr1 11527678 11527853 -185667579 - L1MC LINE L1 -2331 3815 3618 4 672 483 315 58 35 chr1 11528110 11528215 -185667217 - L1M4 LINE L1 -2804 3342 3239 4 672 270 0 0 0 chr1 11528215 11528245 -185667187 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 672 1129 77 0 0 chr1 11528246 11528389 -185667043 - B1_Mm SINE Alu -3 144 2 5 672 483 315 58 35 chr1 11528389 11528541 -185666891 - L1M4 LINE L1 -2908 3238 3077 4 672 269 233 35 11 chr1 11528738 11528825 -185666607 - L1M4 LINE L1 -3316 2830 2742 4 672 385 343 116 6 chr1 11528902 11529222 -185666210 - L1M4 LINE L1 -3499 2647 2293 4 672 206 116 0 23 chr1 11529526 11529570 -185665862 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 672 194 128 26 0 chr1 11529620 11529659 -185665773 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 672 308 276 31 31 chr1 11529982 11530109 -185665323 + L1M5 LINE L1 3059 3185 -2961 5 672 591 295 11 31 chr1 11530465 11530667 -185664765 + B3 SINE B2 2 195 0 5 672 23 0 0 0 chr1 11530766 11530789 -185664643 + AT_rich Low_complexity Low_complexity 1 23 0 5 672 651 289 7 0 chr1 11530791 11530933 -185664499 - B3 SINE B2 -5 211 69 5 672 519 222 166 7 chr1 11531703 11531774 -185663658 - Lx9 LINE L1 -720 6924 6830 5 672 345 100 0 0 chr1 11531774 11531824 -185663608 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 5 672 519 222 166 7 chr1 11531824 11531897 -185663535 - Lx9 LINE L1 -815 6829 6757 5 672 658 274 87 16 chr1 11531851 11532174 -185663258 + Lx9 LINE L1 7299 7644 0 5 672 341 314 136 95 chr1 11533201 11533834 -185661598 - HAL1 LINE L1 -205 2302 1644 5 672 271 305 25 8 chr1 11533855 11533974 -185661458 - HAL1 LINE L1 -914 1593 1473 5 673 1179 50 0 0 chr1 11534918 11535057 -185660375 + B1_Mm SINE Alu 1 139 -8 6 673 23 0 0 0 chr1 11535069 11535092 -185660340 + AT_rich Low_complexity Low_complexity 1 23 0 6 673 198 0 0 0 chr1 11536128 11536150 -185659282 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 673 273 39 39 19 chr1 11536530 11536582 -185658850 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 6 673 461 354 50 53 chr1 11536949 11537286 -185658146 - MLT1A0 LTR MaLR -22 343 8 6 673 5837 108 68 2 chr1 11537448 11538396 -185657036 - L1_Mus4 LINE L1 -10 6626 5617 6 673 1918 128 3 0 chr1 11538394 11538692 -185656740 + L1_Mus4 LINE L1 5317 5615 -268 6 673 308 274 118 42 chr1 11538726 11538925 -185656507 - MLT1E LTR MaLR -376 277 3 6 673 423 332 60 11 chr1 11538959 11539224 -185656208 - MER33 DNA MER1_type -2 322 45 6 673 5519 100 6 9 chr1 11539236 11540077 -185655355 + L1_Mm LINE L1 4916 5753 -130 6 673 2655 99 5 3 chr1 11540077 11540450 -185654982 - MTA_Mm LTR MaLR 0 396 23 6 673 7177 83 14 74 chr1 11540453 11541622 -185653810 - MTA_Mm-int LTR MaLR 0 1098 1 6 673 2588 52 61 12 chr1 11541624 11541954 -185653478 - MTA_Mm LTR MaLR 0 346 1 6 673 6091 78 14 0 chr1 11541954 11542807 -185652625 + L1_Mus3 LINE L1 5749 6613 -25 7 673 189 0 0 0 chr1 11542808 11542829 -185652603 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 673 400 296 34 85 chr1 11546328 11546505 -185648927 - ORR1E LTR MaLR -169 190 23 7 673 1569 179 55 37 chr1 11546505 11546692 -185648740 - RLTR15 LTR ERVK 0 359 179 7 673 3313 46 2 0 chr1 11546692 11547087 -185648345 + MTA_Mm LTR MaLR 1 396 0 7 673 1569 179 55 37 chr1 11547087 11547213 -185648219 - RLTR15 LTR ERVK -181 178 41 7 673 3920 72 6 2 chr1 11547213 11547724 -185647708 - L1_Mus1 LINE L1 -1 6566 6054 7 673 1569 179 55 37 chr1 11547724 11547757 -185647675 - RLTR15 LTR ERVK -319 40 6 7 673 310 284 19 42 chr1 11548050 11548160 -185647272 + PB1D10 SINE Alu 2 114 -35 7 673 351 0 0 0 chr1 11548287 11548326 -185647106 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 673 321 377 0 0 chr1 11548486 11548592 -185646840 + PB1D10 SINE Alu 2 107 -10 7 673 321 26 0 0 chr1 11549326 11549364 -185646068 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 7 673 763 296 24 0 chr1 11551204 11551410 -185644022 - B3 SINE B2 -5 211 1 8 673 429 54 0 0 chr1 11551439 11551495 -185643937 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 673 920 303 36 29 chr1 11551508 11551783 -185643649 - B4A SINE B4 -14 278 2 8 673 243 0 0 0 chr1 11552310 11552337 -185643095 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 673 875 92 8 0 chr1 11552568 11552699 -185642733 + (GGAA)n Simple_repeat Simple_repeat 1 132 0 8 673 421 299 100 39 chr1 11553110 11553389 -185642043 - HAL1-2a_MD LINE L1 -461 2563 2268 8 673 684 296 90 13 chr1 11553774 11554150 -185641282 - Charlie1a DNA MER1_type -5 1450 1046 8 673 189 107 0 0 chr1 11554487 11554515 -185640917 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 8 673 678 167 32 13 chr1 11554528 11554686 -185640746 + CT-rich Low_complexity Low_complexity 2 162 0 8 673 279 234 220 40 chr1 11554948 11555175 -185640257 - Lx5 LINE L1 -3 7047 6780 8 673 37 0 0 0 chr1 11555685 11555722 -185639710 + AT_rich Low_complexity Low_complexity 1 37 0 9 673 275 271 0 0 chr1 11555747 11555843 -185639589 - Lx9 LINE L1 -16 7628 7533 9 673 255 31 0 0 chr1 11555979 11556011 -185639421 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 9 673 424 347 28 28 chr1 11556013 11556191 -185639241 - ID_B1 SINE B4 -11 213 36 9 673 566 279 41 41 chr1 11557345 11557588 -185637844 + L1M3 LINE L1 5384 5626 -557 9 673 385 222 0 0 chr1 11557594 11557675 -185637757 + L1MB2 LINE L1 5540 5620 -563 9 673 249 293 136 57 chr1 11557795 11557972 -185637460 + MLT1A1 LTR MaLR 125 315 -93 9 673 608 261 93 17 chr1 11557987 11558383 -185637049 + L1MB2 LINE L1 5688 6122 -61 9 673 233 334 74 47 chr1 11558820 11558992 -185636440 - MIRb SINE MIR -23 239 58 9 673 1145 229 35 46 chr1 11559682 11559966 -185635466 - MTD LTR MaLR -138 281 1 9 673 279 239 220 102 chr1 11560030 11560207 -185635225 + B3A SINE B2 1 198 0 9 673 500 302 5 93 chr1 11561151 11561366 -185634066 + B3A SINE B2 2 197 -1 1 673 250 258 33 22 chr1 11561541 11561632 -185633800 + L1M5 LINE L1 5498 5589 -535 1 673 960 259 111 44 chr1 11561686 11562029 -185633403 - ORR1D1 LTR MaLR -6 368 3 1 673 401 354 104 36 chr1 11562586 11562923 -185632509 + L1MC4 LINE L1 7151 7510 -532 1 673 606 147 0 0 chr1 11564134 11564229 -185631203 - RMER16 LTR ERVK 0 533 439 1 673 7623 65 4 2 chr1 11564234 11565206 -185630226 + L1_Mus1 LINE L1 5594 6567 0 1 673 3854 271 58 47 chr1 11565206 11567451 -185627981 - RMER16-int LTR ERVK -2585 3582 1317 1 673 593 275 52 17 chr1 11568600 11568774 -185626658 - RMER16-int LTR ERVK -5208 198 19 1 673 510 165 0 0 chr1 11568778 11568863 -185626569 - RMER16 LTR ERVK 0 533 449 1 673 6439 128 29 16 chr1 11568868 11570611 -185624821 - L1VL2 LINE L1 -1728 1887 115 1 673 225 246 0 0 chr1 11570588 11570645 -185624787 - L1VL1 LINE L1 -5819 603 547 1 673 378 226 469 0 chr1 11570617 11570794 -185624638 - L1VL2 LINE L1 -5958 377 118 1 673 248 250 138 0 chr1 11570805 11570885 -185624547 - L1VL2 LINE L1 -5935 400 310 1 673 249 391 105 4 chr1 11571048 11571287 -185624145 - MLT1H-int LTR MaLR -1013 396 134 1 673 242 188 67 80 chr1 11571645 11571720 -185623712 - MLT1H LTR MaLR -338 211 138 1 673 393 276 11 11 chr1 11572226 11572327 -185623105 + B1_Mur1 SINE Alu 32 137 -12 1 673 1143 26 20 0 chr1 11572327 11572478 -185622954 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 1 673 294 306 43 43 chr1 11572478 11572492 -185622940 + B1_Mm SINE Alu 136 147 0 1 673 219 36 0 0 chr1 11573598 11573626 -185621806 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 673 564 246 8 47 chr1 11574590 11574718 -185620714 + B1_Mur2 SINE Alu 1 123 -26 1 673 186 143 0 0 chr1 11574719 11574754 -185620678 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 673 372 94 0 0 chr1 11574757 11574810 -185620622 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 673 1528 69 0 10 chr1 11574846 11575052 -185620380 + L1_Mus1 LINE L1 6364 6567 0 1 673 28 29 0 0 chr1 11575698 11575733 -185619699 + AT_rich Low_complexity Low_complexity 1 35 0 1 673 1124 211 91 6 chr1 11576222 11576669 -185618763 - Lx5 LINE L1 -627 6423 5892 1 673 662 298 70 22 chr1 11576656 11576759 -185618673 + Lx5 LINE L1 6632 6746 -714 1 673 498 103 0 0 chr1 11576759 11576837 -185618595 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 673 2305 265 17 63 chr1 11576837 11577288 -185618144 + Lx5 LINE L1 6454 6871 -589 1 673 993 76 15 0 chr1 11577288 11577420 -185618012 + B1_Mus1 SINE Alu 5 138 -10 1 673 351 0 0 0 chr1 11577420 11577459 -185617973 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 673 2305 264 14 65 chr1 11577459 11577657 -185617775 + Lx5 LINE L1 6869 7049 -1 1 673 21 57 0 0 chr1 11577698 11577733 -185617699 + AT_rich Low_complexity Low_complexity 1 35 0 1 673 361 250 116 102 chr1 11578847 11578994 -185616438 + RSINE1 SINE B4 17 165 0 1 673 22 70 0 0 chr1 11579018 11579061 -185616371 + AT_rich Low_complexity Low_complexity 1 43 0 1 673 400 151 27 0 chr1 11579517 11579590 -185615842 - ORR1D1 LTR MaLR 0 378 304 1 673 479 189 43 43 chr1 11579666 11579782 -185615650 + URR1B DNA MER1_type 110 225 0 1 673 1232 187 123 72 chr1 11579782 11580072 -185615360 - ORR1D1 LTR MaLR -87 287 2 1 673 305 319 74 27 chr1 11582103 11582251 -185613181 + HAL1-3A_ME LINE L1 2284 2438 -420 1 673 231 279 16 0 chr1 11583055 11583116 -185612316 + RSINE1 SINE B4 1 62 -103 1 673 249 369 193 8 chr1 11583836 11584427 -185611005 + L2 LINE L2 826 1525 -1894 1 673 1061 294 95 20 chr1 11584689 11585339 -185610093 + L1MDb LINE L1 776 1474 -5066 1 673 261 274 89 89 chr1 11585343 11585467 -185609965 + B3A SINE B2 1 124 -74 1 673 617 250 0 0 chr1 11585442 11585566 -185609866 - B3 SINE B2 -86 130 7 1 673 342 290 0 0 chr1 11585574 11585674 -185609758 + L1MDb LINE L1 1725 1824 -4809 1 673 345 240 81 29 chr1 11585734 11585906 -185609526 + L1MDb LINE L1 1961 2141 -4492 1 673 24 32 0 0 chr1 11586984 11587015 -185608417 + AT_rich Low_complexity Low_complexity 1 31 0 1 673 924 172 0 0 chr1 11587033 11587178 -185608254 - B1_Mus2 SINE Alu -2 145 1 1 673 22 35 0 0 chr1 11587341 11587370 -185608062 + AT_rich Low_complexity Low_complexity 1 29 0 1 673 24 0 0 0 chr1 11588721 11588745 -185606687 + AT_rich Low_complexity Low_complexity 1 24 0 1 673 1218 108 38 0 chr1 11590779 11590965 -185604467 + B2_Mm1t SINE B2 1 193 0 1 673 1016 59 7 0 chr1 11591117 11591253 -185604179 + B1_Mus1 SINE Alu 12 148 0 1 673 185 0 40 0 chr1 11591264 11591289 -185604143 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 673 23 33 0 0 chr1 11592137 11592167 -185603265 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 309 26 0 0 chr1 11593155 11593193 -185602239 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 673 486 114 0 0 chr1 11593210 11593289 -185602143 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 673 24 0 0 0 chr1 11593713 11593737 -185601695 + AT_rich Low_complexity Low_complexity 1 24 0 1 673 6433 77 6 3 chr1 11593737 11594588 -185600844 - L1_Mus1 LINE L1 0 6567 5715 1 673 210 154 0 0 chr1 11594793 11594832 -185600600 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1 673 870 69 8 15 chr1 11595159 11595292 -185600140 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 1 673 276 208 0 0 chr1 11595351 11595452 -185599980 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 673 450 287 180 10 chr1 11596103 11596504 -185598928 + L1M5 LINE L1 5351 5819 -345 1 673 288 379 90 42 chr1 11596549 11596838 -185598594 + MLT1A LTR MaLR 1 303 -71 1 673 21 36 0 0 chr1 11596886 11596914 -185598518 + AT_rich Low_complexity Low_complexity 1 28 0 1 673 337 283 81 0 chr1 11597462 11597561 -185597871 - ID_B1 SINE B4 -10 214 108 1 673 241 24 23 47 chr1 11597805 11597848 -185597584 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 1 673 1275 20 0 0 chr1 11597848 11597994 -185597438 - B1_Mm SINE Alu 0 147 2 1 673 253 312 56 47 chr1 11598486 11598718 -185596714 - L1MCa LINE L1 -3659 2662 2429 1 673 244 247 76 25 chr1 11598771 11598929 -185596503 - L1MCa LINE L1 -4140 2368 2203 1 673 475 267 35 0 chr1 11598998 11599114 -185596318 - B1F1 SINE Alu -6 143 24 1 673 713 225 73 23 chr1 11599194 11599371 -185596061 - B3 SINE B2 -30 186 1 1 673 469 259 128 126 chr1 11599556 11600257 -185595175 - L1MCa LINE L1 -4559 1949 1247 1 673 7612 115 4 1 chr1 11600323 11601881 -185593551 - L1_Mus3 LINE L1 -7 6631 5069 1 673 12791 104 21 29 chr1 11601878 11602219 -185593213 - L1VL4 LINE L1 -599 2960 2638 1 673 438 29 29 14 chr1 11602219 11602288 -185593144 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 1 673 12791 124 27 27 chr1 11602288 11604643 -185590789 - L1VL4 LINE L1 -922 2637 256 1 673 192 77 0 0 chr1 11604676 11604702 -185590730 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1 673 394 285 92 46 chr1 11604702 11604875 -185590557 - L1MCa LINE L1 -5292 1216 1036 1 673 31381 26 0 0 chr1 11604965 11609434 -185585998 - L1Md_T LINE L1 0 6585 2117 1 673 1801 106 31 22 chr1 11609434 11609753 -185585679 - RLTRETN_Mm LTR ERVK 0 322 1 1 673 24084 31 11 10 chr1 11609753 11614332 -185581100 - MMETn-int LTR ERVK 0 4844 180 1 673 2878 28 0 0 chr1 11614303 11614657 -185580775 - ETnERV-int LTR ERVK -2960 354 1 1 673 2015 80 31 16 chr1 11614657 11614974 -185580458 - RLTRETN_Mm LTR ERVK 0 322 1 1 673 9660 37 1 0 chr1 11614974 11617097 -185578335 - L1Md_T LINE L1 -3764 2122 1 1 673 459 318 47 13 chr1 11617193 11617429 -185578003 - L1MCa LINE L1 -5680 828 585 1 673 282 335 13 13 chr1 11617526 11617683 -185577749 - L1M4 LINE L1 -1194 4952 4796 1 673 505 304 148 23 chr1 11618120 11618551 -185576881 - L1M4 LINE L1 -2319 3827 3343 1 673 306 0 0 0 chr1 11618638 11618672 -185576760 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 673 1170 69 0 0 chr1 11618674 11618818 -185576614 - B1_Mus1 SINE Alu -4 144 1 1 673 332 422 14 0 chr1 11618867 11619009 -185576423 - RSINE1 SINE B4 -14 151 8 1 673 563 285 0 20 chr1 11619245 11619392 -185576040 + B1_Mur4 SINE Alu 3 146 -4 1 673 22 0 0 0 chr1 11619393 11619415 -185576017 + AT_rich Low_complexity Low_complexity 1 22 0 1 673 473 293 102 22 chr1 11619502 11619655 -185575777 + B3A SINE B2 1 166 -32 1 673 210 37 0 0 chr1 11619656 11619683 -185575749 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 673 32 75 0 0 chr1 11619749 11619816 -185575616 + AT_rich Low_complexity Low_complexity 1 67 0 1 673 249 281 125 10 chr1 11619837 11619941 -185575491 - MIRb SINE MIR -58 210 95 1 673 641 13 13 0 chr1 11620376 11620454 -185574978 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 673 903 208 138 46 chr1 11621605 11621971 -185573461 - RMER16 LTR ERVK 0 533 1 1 673 21 36 0 0 chr1 11622047 11622075 -185573357 + AT_rich Low_complexity Low_complexity 1 28 0 1 673 269 367 31 0 chr1 11622298 11622396 -185573036 + MER20B DNA MER1_type 54 154 -629 1 673 704 217 119 5 chr1 11622478 11622663 -185572769 - B3 SINE B2 -10 206 1 1 673 21 0 0 0 chr1 11622812 11622833 -185572599 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 649 252 7 0 chr1 11623253 11623396 -185572036 - B1_Mur3 SINE Alu -2 147 4 1 673 303 0 0 0 chr1 11627666 11627701 -185567731 - L1Md_F2 LINE L1 -662 5920 5886 1 673 4879 54 48 0 chr1 11627701 11628331 -185567101 + L1Md_F2 LINE L1 5922 6581 -1 1 673 845 276 84 27 chr1 11628845 11629180 -185566252 + ORR1E LTR MaLR 5 358 -1 1 673 3570 49 4 28 chr1 11629397 11629863 -185565569 - L1_Mus1 LINE L1 0 6567 6113 1 673 655 323 0 68 chr1 11631504 11631676 -185563756 + B3A SINE B2 1 160 -38 1 673 297 0 0 0 chr1 11631676 11631709 -185563723 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 673 655 323 0 68 chr1 11631709 11631742 -185563690 + B3A SINE B2 161 192 -6 1 673 279 257 0 14 chr1 11632589 11632660 -185562772 + GA-rich Low_complexity Low_complexity 4 73 0 1 673 474 236 11 0 chr1 11632988 11633077 -185562355 - B1F SINE Alu -33 116 27 1 673 424 231 18 128 chr1 11633418 11633527 -185561905 + B3 SINE B2 12 108 -108 1 673 2986 26 3 0 chr1 11635076 11635421 -185560011 - ORR1A0 LTR MaLR 0 346 1 1 673 13555 46 40 1 chr1 11635421 11637145 -185558287 - ORR1A0-int LTR MaLR 0 1792 1 1 673 3000 17 3 6 chr1 11637145 11637492 -185557940 - ORR1A0 LTR MaLR 0 346 1 1 673 261 0 0 0 chr1 11638345 11638374 -185557058 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 673 261 0 0 0 chr1 11638374 11638402 -185557030 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 673 735 341 96 8 chr1 11639122 11639373 -185556059 + B4A SINE B4 10 282 -10 1 673 324 0 0 0 chr1 11639407 11639443 -185555989 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 673 423 0 0 0 chr1 11639864 11639911 -185555521 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 673 248 401 27 0 chr1 11640588 11640735 -185554697 - L3 LINE CR1 -280 4209 4059 1 673 695 140 0 8 chr1 11640819 11640949 -185554483 + (TA)n Simple_repeat Simple_repeat 2 130 0 1 673 247 314 81 0 chr1 11641802 11641926 -185553506 - MER103 DNA DNA -25 141 8 2 673 285 401 23 33 chr1 11642412 11642626 -185552806 + ORR1E LTR MaLR 1 212 -147 2 673 333 0 0 0 chr1 11642729 11642766 -185552666 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 673 269 282 28 0 chr1 11642976 11643047 -185552385 - ID4 SINE ID -10 73 1 2 673 25 31 0 0 chr1 11643234 11643266 -185552166 + AT_rich Low_complexity Low_complexity 1 32 0 2 673 22 35 0 0 chr1 11644304 11644333 -185551099 + AT_rich Low_complexity Low_complexity 1 29 0 2 673 222 155 58 23 chr1 11644411 11644497 -185550935 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 673 77 31 0 0 chr1 11644497 11644595 -185550837 + AT_rich Low_complexity Low_complexity 1 98 0 2 673 572 310 0 48 chr1 11644682 11644761 -185550671 + RSINE1 SINE B4 4 78 -87 2 673 2785 119 42 38 chr1 11644761 11645240 -185550192 - RLTR45 LTR ERVK 0 482 2 2 673 572 310 0 48 chr1 11645240 11645326 -185550106 + RSINE1 SINE B4 79 161 -4 2 673 23 0 0 0 chr1 11645682 11645705 -185549727 + AT_rich Low_complexity Low_complexity 1 23 0 2 673 309 51 0 0 chr1 11645710 11645749 -185549683 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 673 284 345 0 26 chr1 11645894 11646007 -185549425 + PB1D10 SINE Alu 2 111 -6 2 673 6708 86 7 31 chr1 11646373 11647419 -185548013 - L1_Mus2 LINE L1 0 6566 5547 2 673 332 296 68 15 chr1 11647510 11647671 -185547761 + B1F SINE Alu 1 142 -8 2 673 594 0 0 0 chr1 11648748 11648814 -185546618 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 673 2090 101 188 5 chr1 11650104 11650492 -185544940 - RLTR47_MM LTR ERV1 -73 459 1 2 673 243 362 8 49 chr1 11650610 11650732 -185544700 - PB1D10 SINE Alu 0 117 1 2 673 39 0 0 0 chr1 11650732 11650771 -185544661 + AT_rich Low_complexity Low_complexity 1 39 0 2 673 611 229 82 30 chr1 11650857 11651166 -185544266 + ORR1D1 LTR MaLR 14 374 0 2 673 21 0 0 0 chr1 11651287 11651308 -185544124 + AT_rich Low_complexity Low_complexity 1 21 0 2 673 20247 102 3 2 chr1 11651308 11655183 -185540249 - L1_Mus1 LINE L1 0 6567 2690 2 673 443 78 0 0 chr1 11655179 11655243 -185540189 + L1_Mur1 LINE L1 2502 2565 -3321 2 673 1789 162 78 8 chr1 11655240 11655601 -185539831 - L1_Mus1 LINE L1 -5844 772 387 2 673 424 299 68 25 chr1 11656105 11656266 -185539166 - MER34 LTR ERV1 -4 538 371 2 673 1604 234 34 6 chr1 11656387 11656744 -185538688 - MTE2b LTR MaLR -12 367 1 2 673 469 270 45 37 chr1 11656999 11657212 -185538220 + ORR1D1 LTR MaLR 158 380 -14 2 673 682 236 110 14 chr1 11657571 11657790 -185537642 - MER2 DNA MER2_type -96 249 10 2 673 237 293 16 79 chr1 11658000 11658126 -185537306 - MER87 LTR ERV1 -36 505 388 2 673 256 236 11 11 chr1 11658930 11659020 -185536412 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 673 1248 211 174 107 chr1 11659091 11659521 -185535911 - MT2A LTR ERVL -74 459 1 2 673 1152 68 7 7 chr1 11659579 11659727 -185535705 + B1_Mus1 SINE Alu 1 148 0 2 673 23 78 0 0 chr1 11660964 11661015 -185534417 + AT_rich Low_complexity Low_complexity 1 51 0 2 673 1009 54 8 0 chr1 11661604 11661734 -185533698 - B1_Mm SINE Alu 0 147 17 2 673 243 0 0 0 chr1 11661858 11661885 -185533547 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 673 574 292 146 85 chr1 11661885 11662331 -185533101 - MLT1F LTR MaLR -67 481 9 2 673 232 353 126 30 chr1 11662551 11662814 -185532618 - Charlie7 DNA MER1_type -2042 570 283 2 673 2874 60 3 0 chr1 11662900 11663265 -185532167 - L1Md_F2 LINE L1 -2 6580 6215 2 673 289 310 108 45 chr1 11663287 11663463 -185531969 - MLT1F LTR MaLR -354 194 8 2 673 4464 31 4 2 chr1 11663463 11664019 -185531413 - L1Md_F2 LINE L1 -384 6198 5642 2 84 28635 11 1 3 chr1 11664050 11669439 -185525993 + L1Md_A LINE L1 237 5586 -297 2 674 8814 16 0 0 chr1 11669439 11670435 -185524997 + L1Md_A LINE L1 5587 6582 0 2 674 310 134 37 0 chr1 11670440 11670522 -185524910 - RMER17D2 LTR ERVK -417 489 405 2 674 21280 52 3 0 chr1 11670522 11673357 -185522075 - L1Md_F3 LINE L1 -223 5660 2817 2 674 5912 51 5 3 chr1 11673357 11674099 -185521333 + L1Md_F3 LINE L1 5827 6570 -14 2 674 2193 154 20 5 chr1 11674100 11674497 -185520935 - RMER17D2 LTR ERVK -406 403 1 2 674 26905 123 17 9 chr1 11674640 11678082 -185517350 - L1_Mus3 LINE L1 -5 6633 3176 2 674 207 0 0 0 chr1 11678082 11678105 -185517327 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 674 26905 131 10 12 chr1 11678105 11679709 -185515723 - L1_Mus3 LINE L1 -2708 3175 1573 2 674 1722 90 0 16 chr1 11679709 11679957 -185515475 + L1Md_F2 LINE L1 6327 6570 -12 2 674 26905 117 5 3 chr1 11679957 11681314 -185514118 - L1_Mus3 LINE L1 -4311 1572 217 2 674 228 310 14 0 chr1 11681654 11681725 -185513707 + G-rich Low_complexity Low_complexity 3 74 0 2 674 393 331 17 44 chr1 11683718 11683898 -185511534 - L1M5 LINE L1 -2883 3263 3089 2 674 305 198 12 0 chr1 11684218 11684304 -185511128 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 674 243 68 0 0 chr1 11684660 11684704 -185510728 - L1_Mus2 LINE L1 0 6566 6523 2 674 376 325 104 67 chr1 11685451 11685778 -185509654 - LTR40b LTR ERVL 0 462 124 2 674 201 47 70 0 chr1 11686595 11686638 -185508794 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 2 674 1222 278 92 40 chr1 11688122 11689167 -185506265 + L1MC1 LINE L1 4965 6109 -235 2 674 551 309 22 0 chr1 11690720 11690856 -185504576 - RSINE1 SINE B4 -24 141 3 2 674 869 263 227 3 chr1 11690941 11691258 -185504174 - MTD LTR MaLR -14 405 18 2 674 270 286 81 10 chr1 11691276 11691375 -185504057 - MLT1B LTR MaLR -280 110 5 2 674 1654 175 48 0 chr1 11694081 11694418 -185501014 + BGLII_A LTR ERVK 91 443 -2 2 674 243 135 0 0 chr1 11694423 11694460 -185500972 - tRNA-Lys-AAG tRNA tRNA 0 76 40 2 674 2047 298 48 64 chr1 11694505 11695484 -185499948 + MYSERV16_I-int LTR ERVK 324 1286 -7673 2 674 2421 270 11 26 chr1 11695548 11696076 -185499356 + MurERV4-int LTR ERVK 2545 3063 -2197 2 674 1032 96 0 0 chr1 11696076 11696212 -185499220 + B1_Mus1 SINE Alu 1 136 -12 2 674 252 0 0 0 chr1 11696212 11696240 -185499192 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 674 2421 270 11 26 chr1 11696240 11696405 -185499027 + MurERV4-int LTR ERVK 3064 3228 -2032 2 674 2027 226 4 24 chr1 11696443 11696552 -185498880 + MYSERV16_I-int LTR ERVK 2681 2790 -6169 2 674 3572 10 2 0 chr1 11696552 11696947 -185498485 - MTA_Mm LTR MaLR 0 396 1 2 674 9020 37 6 1 chr1 11696947 11698039 -185497393 - MTA_Mm-int LTR MaLR 0 1098 1 2 674 3572 10 2 0 chr1 11698039 11698434 -185496998 - MTA_Mm LTR MaLR 0 396 1 2 674 2027 226 4 24 chr1 11698434 11698820 -185496612 + MYSERV16_I-int LTR ERVK 2791 3166 -5793 2 674 3865 137 75 46 chr1 11698820 11699813 -185495619 + RMER17D2 LTR ERVK 1 906 0 2 674 633 167 62 7 chr1 11699813 11699958 -185495474 + MYSERV16_I-int LTR ERVK 3164 3316 -5643 2 674 7856 36 4 0 chr1 11699972 11701072 -185494360 - L1Md_F3 LINE L1 -14 6570 5467 2 674 6065 229 71 30 chr1 11701072 11704457 -185490975 + MYSERV16_I-int LTR ERVK 5 4615 -4344 2 674 35967 43 3 4 chr1 11704487 11710793 -185484639 - L1Md_T LINE L1 0 6585 199 2 674 1854 164 97 3 chr1 11710793 11711183 -185484249 + BGLII_A LTR ERVK 19 445 0 2 674 257 367 77 66 chr1 11711345 11711631 -185483801 - B4 SINE B4 0 292 4 2 674 243 114 0 0 chr1 11711737 11711781 -185483651 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 674 396 0 0 0 chr1 11711781 11711825 -185483607 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 674 4926 50 0 2 chr1 11712103 11712704 -185482728 + L1Md_F2 LINE L1 5969 6568 -14 2 674 39232 6 0 3 chr1 11713331 11719933 -185475499 - L1Md_A LINE L1 -1 6581 1 2 674 28 0 0 0 chr1 11720338 11720366 -185475066 + AT_rich Low_complexity Low_complexity 1 28 0 2 674 1121 70 7 7 chr1 11720373 11720518 -185474914 - B1_Mus2 SINE Alu -2 145 1 2 674 407 240 88 0 chr1 11721112 11721304 -185474128 + Lx9 LINE L1 7436 7644 0 2 674 317 24 24 0 chr1 11722033 11722075 -185473357 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 674 696 316 98 59 chr1 11722700 11723006 -185472426 - MTEa LTR MaLR -59 320 3 2 674 1613 306 114 60 chr1 11723010 11723781 -185471651 - MTEa-int LTR MaLR -2 1578 658 2 674 2521 152 32 32 chr1 11723781 11724242 -185471190 - RMER6B LTR ERVK 0 461 1 2 674 886 355 110 95 chr1 11724242 11724815 -185470617 - MTEa-int LTR MaLR -713 657 56 2 674 4076 119 16 13 chr1 11724843 11725474 -185469958 - Lx3_Mus LINE L1 0 7009 6377 2 674 3049 87 12 21 chr1 11725477 11725960 -185469472 + Lx3_Mus LINE L1 5898 6376 -633 2 674 311 224 0 29 chr1 11725969 11726038 -185469394 - MTEa-int LTR MaLR -1513 67 1 2 674 684 309 54 100 chr1 11726038 11726408 -185469024 - MTEa LTR MaLR 0 379 27 2 674 510 219 143 0 chr1 11726689 11726808 -185468624 + ORR1D1 LTR MaLR 231 366 -8 2 674 2569 152 22 37 chr1 11729314 11729773 -185465659 - RMER4A LTR ERVK 0 466 15 2 674 23 68 0 0 chr1 11730178 11730222 -185465210 + AT_rich Low_complexity Low_complexity 1 44 0 2 674 23 33 0 0 chr1 11730253 11730283 -185465149 + AT_rich Low_complexity Low_complexity 1 30 0 2 674 278 253 0 67 chr1 11730774 11730863 -185464569 - MER89 LTR ERV1 -475 84 2 2 674 515 313 48 24 chr1 11731084 11731333 -185464099 - MER89-int LTR ERV1 -268 6533 6279 2 674 352 247 0 13 chr1 11731334 11731412 -185464020 + RSINE1 SINE B4 51 127 -38 2 674 396 0 0 0 chr1 11731427 11731471 -185463961 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 674 376 285 136 58 chr1 11731835 11732077 -185463355 - LTR48B LTR ERV1 -60 727 367 2 674 297 68 0 0 chr1 11733046 11733090 -185462342 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 674 2481 166 63 20 chr1 11733534 11733863 -185461569 - RLTR11A2 LTR ERVK 0 527 194 2 674 243 0 0 0 chr1 11733863 11733890 -185461542 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 674 2481 166 63 20 chr1 11733890 11734065 -185461367 - RLTR11A2 LTR ERVK -334 193 2 2 674 4408 50 7 5 chr1 11735628 11736191 -185459241 + LTRIS2 LTR ERV1 1 564 0 2 674 493 97 47 31 chr1 11736227 11736355 -185459077 + (CAGAGA)n Simple_repeat Simple_repeat 2 131 0 2 674 699 173 16 0 chr1 11737026 11737153 -185458279 + B1_Mus1 SINE Alu 2 130 -18 2 674 2751 133 4 92 chr1 11737154 11737643 -185457789 - RLTR41 LTR ERV1 0 446 1 2 674 321 26 0 0 chr1 11737661 11737699 -185457733 + (GGA)n Simple_repeat Simple_repeat 2 39 0 2 674 189 0 0 0 chr1 11737887 11737908 -185457524 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 674 357 82 0 0 chr1 11740279 11740328 -185455104 + (A)n Simple_repeat Simple_repeat 1 49 0 2 674 195 328 0 0 chr1 11741136 11741200 -185454232 - MIR SINE MIR -102 160 97 2 674 6339 232 54 37 chr1 11741335 11741508 -185453924 - Lx6 LINE L1 0 7460 7279 2 674 213 39 0 0 chr1 11741508 11741534 -185453898 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 674 6339 232 54 37 chr1 11741534 11743132 -185452300 - Lx6 LINE L1 -182 7278 5660 2 674 461 206 0 9 chr1 11743133 11743183 -185452249 + polypurine Low_complexity Low_complexity 2 51 0 2 674 1299 79 0 0 chr1 11743183 11743360 -185452072 + (GGA)n Simple_repeat Simple_repeat 3 179 0 3 674 461 206 0 9 chr1 11743360 11743417 -185452015 + polypurine Low_complexity Low_complexity 52 108 0 3 674 1707 164 111 22 chr1 11743871 11744233 -185451199 + ORR1B1 LTR MaLR 1 394 0 3 674 288 154 0 0 chr1 11744515 11744567 -185450865 + CT-rich Low_complexity Low_complexity 2 53 0 3 674 353 305 0 71 chr1 11744617 11744744 -185450688 - MLT1A0 LTR MaLR -210 155 38 3 674 242 288 98 28 chr1 11745052 11745195 -185450237 - LTR48 LTR ERV1 -78 709 557 3 674 857 265 154 6 chr1 11745382 11745712 -185449720 - MTE2b LTR MaLR 0 379 1 3 674 644 279 89 67 chr1 11745989 11746346 -185449086 + MTEb LTR MaLR 1 323 -36 3 674 207 156 0 0 chr1 11746361 11746393 -185449039 + GA-rich Low_complexity Low_complexity 3 34 0 3 674 3549 144 24 6 chr1 11746491 11747238 -185448194 - Lx2A1 LINE L1 -1053 5955 5190 3 674 3862 167 21 24 chr1 11747238 11747988 -185447444 + Lx LINE L1 5907 6654 0 3 674 835 264 89 4 chr1 11747999 11748246 -185447186 - ORR1D2 LTR MaLR -101 269 2 3 674 670 228 234 0 chr1 11748349 11748516 -185446916 + B3 SINE B2 1 206 -10 3 674 25 0 0 0 chr1 11748516 11748541 -185446891 + AT_rich Low_complexity Low_complexity 1 25 0 3 674 273 305 38 15 chr1 11748894 11749027 -185446405 + L1M2 LINE L1 5553 5688 -603 3 674 429 20 0 0 chr1 11750281 11750331 -185445101 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3 674 1456 95 18 9 chr1 11750608 11750832 -185444600 - L1Md_F2 LINE L1 0 6582 6357 3 674 411 145 0 0 chr1 11750936 11751005 -185444427 + (AGGGGG)n Simple_repeat Simple_repeat 1 69 0 3 674 210 292 0 27 chr1 11751034 11751108 -185444324 + GA-rich Low_complexity Low_complexity 2 73 0 3 674 680 286 84 29 chr1 11751899 11752137 -185443295 + MTC LTR MaLR 1 251 -170 3 674 23 33 0 0 chr1 11752268 11752298 -185443134 + AT_rich Low_complexity Low_complexity 1 30 0 3 674 440 278 162 25 chr1 11752668 11752872 -185442560 - MLT1A0 LTR MaLR -4 386 156 3 674 217 51 25 25 chr1 11753120 11753160 -185442272 + (CCCCCG)n Simple_repeat Simple_repeat 3 42 0 3 674 638 187 234 39 chr1 11753162 11753418 -185442014 + RLTR9E LTR ERVK 9 314 -95 3 674 25 51 0 0 chr1 11754001 11754040 -185441392 + AT_rich Low_complexity Low_complexity 1 39 0 3 674 520 14 29 0 chr1 11754133 11754202 -185441230 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 3 674 211 258 88 29 chr1 11754217 11754285 -185441147 - PB1D10 SINE Alu -34 83 12 3 674 23 0 0 0 chr1 11754478 11754501 -185440931 + AT_rich Low_complexity Low_complexity 1 23 0 3 674 28 86 0 0 chr1 11755925 11755995 -185439437 + AT_rich Low_complexity Low_complexity 1 70 0 3 674 389 145 13 0 chr1 11756128 11756204 -185439228 + GA-rich Low_complexity Low_complexity 2 78 0 3 674 688 191 42 99 chr1 11756204 11756396 -185439036 - ORR1D1 LTR MaLR -193 181 1 3 674 1779 239 44 125 chr1 11756404 11757082 -185438350 - Lx9 LINE L1 -392 7252 6630 3 674 212 333 28 0 chr1 11757590 11757662 -185437770 + L3 LINE CR1 4168 4241 -248 3 674 435 19 0 0 chr1 11757867 11757919 -185437513 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 674 663 13 0 0 chr1 11757919 11757994 -185437438 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 674 301 326 20 10 chr1 11758140 11758239 -185437193 + MLT1E3 LTR MaLR 332 431 -193 3 674 2533 190 109 35 chr1 11758249 11758826 -185436606 + RMER13B LTR ERVK 1 620 -288 3 674 238 349 0 0 chr1 11758834 11758900 -185436532 + MLT1E3 LTR MaLR 437 502 -125 3 674 428 391 33 0 chr1 11758963 11759114 -185436318 - RSINE1 SINE B4 -6 159 4 3 674 366 42 0 0 chr1 11759133 11759181 -185436251 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 674 460 354 22 0 chr1 11759198 11759376 -185436056 - B3A SINE B2 -15 183 2 3 674 256 244 99 11 chr1 11759379 11759470 -185435962 + MLT1E3 LTR MaLR 523 621 -3 3 674 242 242 29 152 chr1 11759531 11759741 -185435691 + L1MC1 LINE L1 6149 6332 -1 3 674 432 245 9 29 chr1 11759922 11760027 -185435405 + ORR1E LTR MaLR 1 103 -256 3 674 6866 90 14 5 chr1 11760027 11761015 -185434417 + L1_Mus4 LINE L1 5633 6629 -7 3 674 635 293 94 20 chr1 11761110 11761354 -185434078 + ORR1E LTR MaLR 94 355 -4 3 674 925 261 10 0 chr1 11763313 11763516 -185431916 + B3 SINE B2 2 206 -10 3 674 259 269 52 69 chr1 11763679 11763795 -185431637 + MLT1A1 LTR MaLR 293 406 -2 3 674 2838 12 3 0 chr1 11766129 11766450 -185428982 - RLTRETN_Mm LTR ERVK 0 322 1 3 674 574 299 19 58 chr1 11766666 11766872 -185428560 - B3A SINE B2 0 198 1 3 674 36214 32 2 1 chr1 11766896 11773851 -185421581 - L1Md_T LINE L1 0 6585 1 3 674 1038 164 37 0 chr1 11773876 11774065 -185421367 - Lx9 LINE L1 -614 7030 6835 3 674 839 214 120 4 chr1 11774049 11774316 -185421116 + Lx9 LINE L1 7346 7643 -1 3 674 763 314 83 77 chr1 11775522 11776005 -185419427 - MER34A1 LTR ERV1 -76 511 26 3 674 410 284 31 16 chr1 11776137 11776266 -185419166 + ID_B1 SINE B4 90 220 -4 3 674 638 97 0 11 chr1 11776725 11776819 -185418613 - B2_Mm2 SINE B2 -101 94 2 3 674 24 32 0 0 chr1 11778782 11778813 -185416619 + AT_rich Low_complexity Low_complexity 1 31 0 3 674 496 0 31 0 chr1 11779224 11779288 -185416144 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3 674 228 299 64 27 chr1 11779809 11779919 -185415513 - PB1D7 SINE Alu -2 118 5 3 674 404 245 139 12 chr1 11779943 11780108 -185415324 - L1MA6 LINE L1 -17 6283 6093 3 674 509 30 15 0 chr1 11781350 11781417 -185414015 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 674 247 347 10 14 chr1 11784082 11784184 -185411248 - Charlie24 DNA MER1_type -5 2445 2355 3 674 338 0 24 0 chr1 11784442 11784484 -185410948 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 674 405 0 0 0 chr1 11784489 11784534 -185410898 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 674 232 246 66 0 chr1 11786300 11786361 -185409071 - B1F SINE Alu -64 85 21 3 674 552 298 33 6 chr1 11786512 11786694 -185408738 - B3A SINE B2 -11 187 1 3 674 405 241 133 15 chr1 11787045 11787180 -185408252 - RSINE1 SINE B4 -2 163 13 3 674 22 0 0 0 chr1 11787300 11787322 -185408110 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 22 35 0 0 chr1 11787379 11787408 -185408024 + AT_rich Low_complexity Low_complexity 1 29 0 3 674 203 250 198 12 chr1 11787625 11787706 -185407726 - L3 LINE CR1 -438 4051 3956 3 674 455 0 0 18 chr1 11788003 11788059 -185407373 + (TTA)n Simple_repeat Simple_repeat 2 56 0 3 674 1020 216 18 0 chr1 11788100 11788322 -185407110 - URR1A DNA MER1_type 0 226 1 3 674 1162 68 0 0 chr1 11788951 11789098 -185406334 - B1_Mus2 SINE Alu 0 147 1 3 674 1560 242 54 3 chr1 11789315 11789673 -185405759 - MTD LTR MaLR 0 419 43 3 674 1390 253 106 8 chr1 11789673 11790051 -185405381 - MTD LTR MaLR 0 419 5 3 674 547 338 36 75 chr1 11790641 11790894 -185404538 + B4A SINE B4 1 243 -49 3 674 1450 191 92 0 chr1 11791526 11791830 -185403602 + IAPEY3_LTR LTR ERVK 1 332 0 3 674 338 330 30 1 chr1 11791902 11792089 -185403343 + L1M5 LINE L1 5305 5497 -743 3 674 3695 65 0 0 chr1 11792990 11793453 -185401979 - L1_Mus1 LINE L1 -284 6283 5821 3 674 2301 62 0 0 chr1 11793453 11793741 -185401691 + L1_Mus1 LINE L1 6279 6566 -1 3 674 939 18 0 0 chr1 11793931 11794040 -185401392 + (GAA)n Simple_repeat Simple_repeat 3 111 0 3 84 35853 47 1 20 chr1 11795413 11800694 -185394738 + L1Md_A LINE L1 411 5585 -298 3 675 8235 41 2 0 chr1 11800695 11801687 -185393745 + L1Md_A LINE L1 5587 6580 -2 3 675 21 0 0 0 chr1 11801966 11801987 -185393445 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 276 154 0 0 chr1 11801988 11802040 -185393392 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 3 675 21 0 0 0 chr1 11802217 11802238 -185393194 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 5002 50 7 0 chr1 11802353 11803098 -185392334 + L1Md_F2 LINE L1 5961 6582 0 3 675 21 0 0 0 chr1 11803099 11803120 -185392312 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 189 0 0 0 chr1 11804415 11804436 -185390996 + (TTTTTG)n Simple_repeat Simple_repeat 5 25 0 3 675 36 23 0 0 chr1 11804487 11804530 -185390902 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 1534 256 59 8 chr1 11804530 11805003 -185390429 - Lx7 LINE L1 -1404 6292 5796 3 675 4771 224 146 9 chr1 11804998 11806445 -185388987 - L1_Mur3 LINE L1 -854 5023 3379 3 675 2622 40 68 0 chr1 11806448 11806770 -185388662 + ORR1A1 LTR MaLR 3 346 0 3 675 487 73 15 0 chr1 11806770 11806838 -185388594 + ORR1A1-int LTR MaLR 1 69 -1440 3 675 8708 87 36 9 chr1 11806823 11808141 -185387291 + ORR1A1-int LTR MaLR 440 1792 0 3 675 2747 53 15 0 chr1 11808141 11808482 -185386950 + ORR1A1 LTR MaLR 1 346 0 3 675 1254 209 51 6 chr1 11808482 11808814 -185386618 - L1_Mur3 LINE L1 -2497 3383 3037 3 675 234 0 0 0 chr1 11808815 11808841 -185386591 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 675 11342 182 42 38 chr1 11808852 11812696 -185382736 - Lx LINE L1 -2 6652 2789 3 675 302 50 0 0 chr1 11812696 11812736 -185382696 + RLTR10B LTR ERVK 1 40 -252 3 675 2002 39 0 122 chr1 11812831 11813151 -185382281 + RLTR10B LTR ERVK 12 292 0 3 675 10254 102 14 18 chr1 11813151 11815390 -185380042 - MusHAL1 LINE L1 -1122 2231 4 3 675 2545 206 27 98 chr1 11815436 11815477 -185379955 - L1_Mur3 LINE L1 -3828 2052 2014 3 675 210 26 24 49 chr1 11815477 11815518 -185379914 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 675 3079 211 38 70 chr1 11815518 11817024 -185378408 - L1_Mur3 LINE L1 -3867 2013 540 3 675 31 53 0 39 chr1 11817548 11817626 -185377806 + AT_rich Low_complexity Low_complexity 1 75 0 3 675 906 300 93 41 chr1 11817702 11818195 -185377237 - Lx9 LINE L1 -149 7495 6977 3 675 666 284 0 29 chr1 11818797 11818971 -185376461 - B3A SINE B2 -1 197 29 3 675 2050 214 90 40 chr1 11818982 11819585 -185375847 - Lx7 LINE L1 0 7696 7064 3 675 23 0 0 0 chr1 11819871 11819894 -185375538 + AT_rich Low_complexity Low_complexity 1 23 0 3 675 384 59 0 0 chr1 11820025 11820076 -185375356 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 675 435 118 0 0 chr1 11820076 11820152 -185375280 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 675 226 268 56 0 chr1 11820707 11820778 -185374654 - MLT1B LTR MaLR -26 364 290 4 675 7593 87 18 3 chr1 11820780 11821845 -185373587 - L1_Mus2 LINE L1 -58 5825 4745 4 675 5386 75 4 1 chr1 11821848 11822565 -185372867 + L1_Mus2 LINE L1 5848 6566 0 4 675 1183 294 74 16 chr1 11823510 11823877 -185371555 - MTD LTR MaLR -14 405 18 4 675 336 331 68 38 chr1 11824260 11824392 -185371040 + ID_B1 SINE B4 87 222 -2 4 675 207 0 0 0 chr1 11825525 11825548 -185369884 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 675 32 0 0 0 chr1 11828914 11828946 -185366486 + AT_rich Low_complexity Low_complexity 1 32 0 4 675 661 301 52 0 chr1 11828947 11829140 -185366292 - B3 SINE B2 -13 203 1 4 675 198 0 0 0 chr1 11829856 11829878 -185365554 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 675 740 68 0 0 chr1 11829878 11829981 -185365451 - B1_Mus1 SINE Alu -45 103 1 4 675 5856 96 24 0 chr1 11829988 11830814 -185364618 + Lx3_Mus LINE L1 6164 7009 0 4 675 31 44 0 0 chr1 11830814 11830859 -185364573 + AT_rich Low_complexity Low_complexity 1 45 0 4 675 183 80 0 0 chr1 11830931 11830956 -185364476 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 675 417 284 17 0 chr1 11831012 11831128 -185364304 - RSINE1 SINE B4 -21 144 27 4 675 406 264 8 76 chr1 11831169 11831300 -185364132 - RSINE1 SINE B4 0 165 44 4 675 189 0 0 0 chr1 11832437 11832458 -185362974 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 4 675 990 267 122 5 chr1 11833824 11834201 -185361231 - Lx8 LINE L1 -362 7111 6691 4 675 557 136 10 0 chr1 11834869 11834972 -185360460 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 675 246 229 0 0 chr1 11835139 11835187 -185360245 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 675 25 65 0 0 chr1 11835847 11835893 -185359539 + AT_rich Low_complexity Low_complexity 1 46 0 4 675 217 365 14 0 chr1 11836218 11836292 -185359140 - ID4_ SINE ID -2 81 7 4 675 418 251 36 40 chr1 11836298 11836415 -185359017 - PB1 SINE Alu -2 125 5 4 675 2088 79 0 0 chr1 11836678 11836958 -185358474 - ORR1A1 LTR MaLR -66 280 1 4 675 4542 90 111 45 chr1 11836958 11837726 -185357706 + L1_Mus3 LINE L1 5836 6638 0 4 675 297 0 0 0 chr1 11838200 11838233 -185357199 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 675 243 0 0 0 chr1 11838233 11838260 -185357172 + (CTTA)n Simple_repeat Simple_repeat 2 28 0 4 675 3747 152 67 2 chr1 11838260 11838887 -185356545 - Lx4A LINE L1 -19 7039 6372 4 675 26588 69 1 7 chr1 11838906 11842382 -185353050 - L1Md_F2 LINE L1 -13 6569 3115 4 675 3336 43 0 0 chr1 11842382 11842778 -185352654 - MTA_Mm LTR MaLR 0 396 1 4 675 26588 79 2 5 chr1 11842778 11843787 -185351645 - L1Md_F2 LINE L1 -2769 3114 2106 4 675 34640 35 4 1 chr1 11843785 11848942 -185346490 + L1Md_A LINE L1 413 5586 -297 4 675 8320 39 0 0 chr1 11848942 11849937 -185345495 + L1Md_A LINE L1 5587 6581 -1 4 675 6019 84 1 10 chr1 11849945 11851681 -185343751 - L1Md_F2 LINE L1 -3764 2119 400 4 675 3399 144 7 7 chr1 11851680 11852260 -185343172 - Lx4A LINE L1 -671 6387 5808 4 675 847 83 0 0 chr1 11852260 11852381 -185343051 + L1_Mus1 LINE L1 6446 6566 -1 4 675 30 59 0 0 chr1 11852381 11852432 -185343000 + AT_rich Low_complexity Low_complexity 1 51 0 4 675 602 344 0 0 chr1 11852736 11852893 -185342539 - B3A SINE B2 -36 162 6 4 675 1408 223 50 59 chr1 11853039 11853396 -185342036 - ORR1C1 LTR MaLR -12 366 13 4 675 1971 188 8 17 chr1 11853356 11853718 -185341714 + ORR1B1 LTR MaLR 36 394 0 4 675 2676 223 45 40 chr1 11853719 11854113 -185341319 + ORR1B1-int LTR MaLR 3 371 -1209 4 675 209 33 33 0 chr1 11854113 11854143 -185341289 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 675 2676 195 39 31 chr1 11854143 11854383 -185341049 + ORR1B1-int LTR MaLR 341 580 -1383 4 675 4415 59 9 9 chr1 11854383 11854943 -185340489 + LTRIS2 LTR ERV1 5 564 0 4 675 2676 195 39 31 chr1 11854943 11854968 -185340464 + ORR1B1-int LTR MaLR 581 605 -1358 4 675 459 0 0 0 chr1 11855028 11855079 -185340353 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 675 258 32 0 0 chr1 11855079 11855109 -185340323 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 675 26757 149 12 44 chr1 11855348 11861932 -185333500 - L1_Mus2 LINE L1 -1 6565 220 4 675 407 121 0 0 chr1 11861998 11862056 -185333376 - ORR1C1 LTR MaLR -320 58 1 4 675 349 309 84 30 chr1 11862218 11862525 -185332907 - L1MB7 LINE L1 -227 5935 5594 4 675 26615 140 7 13 chr1 11863628 11869798 -185325634 + L1_Mus3 LINE L1 536 6638 0 4 675 298 239 71 0 chr1 11869814 11869927 -185325505 + L1MC4 LINE L1 7918 8038 -4 4 675 398 308 50 55 chr1 11870451 11870633 -185324799 + MER63A DNA AcHobo 16 196 -14 4 675 501 99 0 0 chr1 11870989 11871070 -185324362 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 675 1114 89 0 0 chr1 11873235 11873381 -185322051 + B1_Mus2 SINE Alu 2 147 0 4 675 263 253 38 0 chr1 11873550 11873629 -185321803 + CT-rich Low_complexity Low_complexity 2 83 0 4 675 349 95 16 16 chr1 11875979 11876043 -185319389 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 675 432 0 0 0 chr1 11876819 11876867 -185318565 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 675 381 280 176 4 chr1 11876871 11877115 -185318317 - Lx7 LINE L1 -4 7692 7407 4 675 452 17 0 0 chr1 11877115 11877175 -185318257 + L1Md_T LINE L1 6523 6582 0 4 675 21 0 0 0 chr1 11877175 11877196 -185318236 + AT_rich Low_complexity Low_complexity 1 21 0 4 675 3057 8 46 0 chr1 11877196 11877547 -185317885 - IAPLTR1_Mm LTR ERVK 0 367 1 4 675 12286 27 1 3 chr1 11877547 11879035 -185316397 - IAPEz-int LTR ERVK 0 6481 4997 4 675 10481 11 1 0 chr1 11879035 11880256 -185315176 - IAPEz-int LTR ERVK -1735 4746 3525 4 675 869 81 24 0 chr1 11880256 11880379 -185315053 - IAPEz-int LTR ERVK -2770 4910 4785 4 675 1669 123 4 15 chr1 11880376 11880641 -185314791 - IAPEz-int LTR ERVK -5183 2497 2236 4 675 441 36 0 0 chr1 11880640 11880695 -185314737 - IAPEz-int LTR ERVK -5070 1411 1357 4 675 3227 79 32 14 chr1 11880695 11881407 -185314025 - IAPEz-int LTR ERVK -5821 660 8 4 675 3057 8 46 0 chr1 11881407 11881758 -185313674 - IAPLTR1_Mm LTR ERVK 0 367 1 4 675 12710 58 0 0 chr1 11881825 11883504 -185311928 + L1Md_F2 LINE L1 3908 5586 -297 4 675 7985 52 5 1 chr1 11883504 11884496 -185310936 + L1Md_F2 LINE L1 5587 6582 0 4 675 1359 212 111 18 chr1 11884497 11884838 -185310594 - Lx7 LINE L1 -338 7358 6986 4 675 1661 228 10 124 chr1 11884842 11885364 -185310068 + Lx7 LINE L1 6207 6668 -1028 4 675 771 209 53 49 chr1 11885366 11885635 -185309797 - ORR1B1 LTR MaLR -105 273 3 4 675 4121 164 39 117 chr1 11885638 11886573 -185308859 - ORR1B1-int LTR MaLR -1 1962 1101 4 675 383 229 0 0 chr1 11886573 11886656 -185308776 + MurERV4_19-int LTR ERVK 271 353 -5427 4 675 1908 185 38 13 chr1 11886656 11887029 -185308403 + MurERV4_19-int LTR ERVK 1246 1627 -4153 4 675 16087 166 19 11 chr1 11887029 11890698 -185304734 + L1VL4 LINE L1 549 4252 -1631 4 675 735 156 0 0 chr1 11890698 11890820 -185304612 - RMER19A LTR ERVK -614 123 2 4 675 1411 222 15 20 chr1 11890820 11891206 -185304226 - ORR1B1-int LTR MaLR -862 1101 718 4 675 890 252 73 70 chr1 11891165 11891451 -185303981 - MT2B LTR ERVL -314 287 1 4 675 263 98 0 0 chr1 11891452 11891493 -185303939 - MERVL_2A-int LTR ERVL -2 5759 5719 4 675 2943 205 58 19 chr1 11891493 11892165 -185303267 - ORR1B1-int LTR MaLR -1323 640 3 4 675 2020 199 10 28 chr1 11892170 11892563 -185302869 - ORR1B1 LTR MaLR -8 386 1 4 675 718 183 64 165 chr1 11893124 11893373 -185302059 + MT2A LTR ERVL 1 224 -309 4 675 287 244 25 8 chr1 11893385 11893505 -185301927 + (TA)n Simple_repeat Simple_repeat 2 123 0 4 675 16254 183 41 20 chr1 11893526 11893580 -185301852 + MERVL_2A-int LTR ERVL 10 55 -5706 4 675 1040 83 14 0 chr1 11893580 11893724 -185301708 - B1_Mus2 SINE Alu 0 147 2 4 675 16254 183 41 20 chr1 11893724 11895238 -185300194 + MERVL_2A-int LTR ERVL 56 1599 -4162 4 675 4373 105 89 12 chr1 11895238 11895582 -185299850 - RMER17D2 LTR ERVK 0 809 447 4 675 741 23 0 0 chr1 11895582 11895669 -185299763 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 675 4373 105 89 12 chr1 11895669 11896073 -185299359 - RMER17D2 LTR ERVK -363 446 3 4 675 16254 183 41 20 chr1 11896073 11897657 -185297775 + MERVL_2A-int LTR ERVL 1600 3228 -2533 4 675 4006 134 60 61 chr1 11897657 11898722 -185296710 - RLTR13D1 LTR ERVK 0 1023 1 4 675 10495 199 19 53 chr1 11898722 11900926 -185294506 + MERVL_2A-int LTR ERVL 3223 5351 -410 4 675 213 378 64 47 chr1 11900926 11901098 -185294334 + MIRb SINE MIR 15 189 -79 4 675 257 89 0 14 chr1 11901624 11901688 -185293744 + L1_Mus4 LINE L1 6511 6634 -2 4 675 407 349 82 36 chr1 11901989 11902209 -185293223 + B4A SINE B4 63 292 0 4 675 29 28 0 0 chr1 11902242 11902278 -185293154 + AT_rich Low_complexity Low_complexity 1 36 0 4 675 404 302 38 34 chr1 11904428 11904695 -185290737 + Lx7 LINE L1 5759 6026 -1670 4 675 2491 325 72 31 chr1 11904763 11905669 -185289763 + Lx8 LINE L1 6153 7087 -386 4 675 4235 150 32 9 chr1 11905669 11906408 -185289024 + RMER6A LTR ERVK 1 756 0 4 675 2491 325 72 31 chr1 11906408 11906644 -185288788 + Lx8 LINE L1 7088 7335 -138 4 675 474 18 0 0 chr1 11906644 11906699 -185288733 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 675 2491 325 72 31 chr1 11906699 11906820 -185288612 + Lx8 LINE L1 7336 7469 -4 4 675 227 135 182 55 chr1 11907443 11907498 -185287934 + ORR1B1 LTR MaLR 23 84 -310 4 675 939 249 34 0 chr1 11907499 11907708 -185287724 + B3 SINE B2 1 216 0 4 675 390 91 0 0 chr1 11907717 11907772 -185287660 + (GGA)n Simple_repeat Simple_repeat 2 56 0 4 675 860 152 6 22 chr1 11907795 11907977 -185287455 + GA-rich Low_complexity Low_complexity 2 180 0 4 675 1090 80 23 6 chr1 11907986 11908163 -185287269 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 675 38 0 0 0 chr1 11908320 11908358 -185287074 + AT_rich Low_complexity Low_complexity 1 38 0 4 675 641 232 18 96 chr1 11908391 11908558 -185286874 - B3A SINE B2 -35 160 7 4 675 252 333 64 9 chr1 11908586 11908695 -185286737 - MIRb SINE MIR -33 235 121 4 675 28270 111 13 30 chr1 11908789 11912704 -185282728 - L1_Mus2 LINE L1 -4 6562 2695 4 675 228 35 0 0 chr1 11912704 11912733 -185282699 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 675 28270 136 30 50 chr1 11912733 11914937 -185280495 - L1_Mus2 LINE L1 -3189 2694 559 4 675 277 282 51 21 chr1 11915037 11915140 -185280292 + PB1D7 SINE Alu 14 119 -1 4 675 25 51 0 0 chr1 11915205 11915244 -185280188 + AT_rich Low_complexity Low_complexity 1 39 0 4 675 501 237 224 6 chr1 11917061 11917092 -185278340 - B3 SINE B2 -5 211 181 4 675 495 0 0 0 chr1 11917092 11917147 -185278285 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 675 501 237 224 6 chr1 11917147 11917285 -185278147 - B3 SINE B2 -36 180 5 4 675 475 14 0 68 chr1 11917448 11917522 -185277910 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 4 675 7572 79 3 1 chr1 11918614 11920057 -185275375 + L1_Mus1 LINE L1 5152 6567 0 4 675 22 0 0 0 chr1 11921069 11921091 -185274341 + AT_rich Low_complexity Low_complexity 1 22 0 4 675 398 256 223 33 chr1 11921208 11921450 -185273982 - MER65D LTR ERV1 0 473 186 4 675 486 167 8 15 chr1 11922276 11922410 -185273022 + (TG)n Simple_repeat Simple_repeat 2 134 0 4 675 189 74 0 0 chr1 11922596 11922623 -185272809 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 675 198 0 0 0 chr1 11922830 11922852 -185272580 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 675 180 343 9 89 chr1 11923922 11924034 -185271398 - L2b LINE L2 -5 3370 3268 4 675 35 54 0 0 chr1 11926463 11926519 -185268913 + AT_rich Low_complexity Low_complexity 1 56 0 4 675 754 230 0 0 chr1 11926594 11926733 -185268699 - B1_Mur2 SINE Alu -10 139 1 4 676 741 257 58 65 chr1 11927770 11928061 -185267371 + B4 SINE B4 3 291 -1 5 676 465 285 71 76 chr1 11928085 11928465 -185266967 - LTR37A LTR ERV1 -29 397 20 5 676 450 0 0 0 chr1 11930657 11930707 -185264725 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 676 260 293 212 68 chr1 11931017 11931086 -185264346 + MTEb LTR MaLR 2 77 -297 5 676 1161 69 0 0 chr1 11931086 11931259 -185264173 + (GTTTG)n Simple_repeat Simple_repeat 2 174 0 5 676 326 292 127 60 chr1 11931259 11931515 -185263917 + MTEb LTR MaLR 78 379 0 5 676 299 229 63 84 chr1 11931726 11931869 -185263563 - L1MD3 LINE L1 -4 7781 7642 5 676 8321 91 60 7 chr1 11932290 11933328 -185262104 - Lx3_Mus LINE L1 0 7009 5923 5 676 546 16 0 0 chr1 11933328 11933391 -185262041 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 5 676 8321 91 60 7 chr1 11933391 11933575 -185261857 - Lx3_Mus LINE L1 -1087 5922 5724 5 676 7965 58 4 0 chr1 11933641 11934683 -185260749 - L1Md_F2 LINE L1 0 6582 5537 5 676 282 221 11 11 chr1 11934683 11934770 -185260662 - L1MD3 LINE L1 -737 7048 6962 5 676 318 324 38 5 chr1 11934790 11934976 -185260456 - L1MD3 LINE L1 -1605 6390 6199 5 676 248 305 37 37 chr1 11935020 11935129 -185260303 - L1MD3 LINE L1 -244 6100 5992 5 676 221 383 0 12 chr1 11936247 11936329 -185259103 + AluG_3 SINE Alu 140 220 -91 5 676 2401 59 15 18 chr1 11936727 11937055 -185258377 - IAPLTR2b LTR ERVK 0 327 1 5 676 14725 53 9 3 chr1 11937057 11938870 -185256562 - IAPEz-int LTR ERVK -2 6479 4656 5 676 1864 95 8 0 chr1 11938869 11939121 -185256311 - IAPEz-int LTR ERVK -5183 2497 2244 5 676 9317 65 49 97 chr1 11939116 11940660 -185254772 - IAPEz-int LTR ERVK -5004 1477 9 5 676 2379 65 15 18 chr1 11940661 11940989 -185254443 - IAPLTR2b LTR ERVK 0 327 1 5 676 26 0 0 0 chr1 11941393 11941419 -185254013 + AT_rich Low_complexity Low_complexity 1 26 0 5 676 21 57 0 0 chr1 11943308 11943343 -185252089 + AT_rich Low_complexity Low_complexity 1 35 0 5 676 371 272 8 26 chr1 11943811 11943928 -185251504 + PB1D10 SINE Alu 1 115 -2 5 676 1112 62 0 33 chr1 11944204 11944355 -185251077 + B1_Mm SINE Alu 2 147 0 5 676 1326 67 0 0 chr1 11944380 11944558 -185250874 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 5 676 319 339 0 35 chr1 11945093 11945209 -185250223 - L1M4 LINE L1 -4763 1977 1866 5 676 317 264 59 44 chr1 11945315 11945450 -185249982 - L1M4 LINE L1 -4978 1564 1428 5 676 406 307 83 3 chr1 11945469 11945783 -185249649 - L1M4 LINE L1 -5094 1448 1110 5 676 228 348 0 25 chr1 11946143 11946261 -185249171 - ORR1E LTR MaLR -157 202 88 5 676 516 252 0 0 chr1 11946475 11946630 -185248802 + CT-rich Low_complexity Low_complexity 2 156 0 5 676 240 219 0 15 chr1 11946734 11946799 -185248633 + T-rich Low_complexity Low_complexity 2 65 0 5 676 635 177 83 15 chr1 11946809 11946941 -185248491 - B1_Mur4 SINE Alu 0 150 10 5 676 304 363 42 82 chr1 11946955 11947285 -185248147 - L1M4 LINE L1 -6075 467 151 5 676 28 29 0 0 chr1 11947376 11947411 -185248021 + AT_rich Low_complexity Low_complexity 1 35 0 5 676 697 208 6 6 chr1 11948366 11948545 -185246887 + CT-rich Low_complexity Low_complexity 2 180 0 5 676 222 226 0 16 chr1 11948647 11948710 -185246722 + T-rich Low_complexity Low_complexity 2 63 0 5 676 641 198 79 19 chr1 11948720 11948870 -185246562 - B1_Mur4 SINE Alu 0 150 4 5 676 1722 97 12 5 chr1 11948920 11949176 -185246256 - ORR1A4 LTR MaLR -99 275 5 5 676 1410 44 0 6 chr1 11949462 11949645 -185245787 + L1Md_F3 LINE L1 6402 6583 -1 5 676 666 0 0 0 chr1 11949757 11949831 -185245601 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 5 676 405 0 0 0 chr1 11950198 11950243 -185245189 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 676 225 288 23 81 chr1 11950247 11950334 -185245098 + ORR1B2 LTR MaLR 115 196 -171 5 676 844 86 0 0 chr1 11950589 11950705 -185244727 - B1_Mus2 SINE Alu -2 145 30 5 676 423 0 0 0 chr1 11950706 11950753 -185244679 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 676 2880 106 9 2 chr1 11950755 11951189 -185244243 - L1_Mus3 LINE L1 -14 6624 6188 5 676 1047 51 0 0 chr1 11951190 11951327 -185244105 + L1_Mus2 LINE L1 5615 5751 -815 5 676 3495 183 129 46 chr1 11951332 11952210 -185243222 - RMER17B LTR ERVK -3 955 5 5 676 501 71 0 0 chr1 11952221 11952291 -185243141 + L1_Mus3 LINE L1 5746 5815 -823 5 676 1467 167 11 3 chr1 11952783 11953065 -185242367 + L1Md_F LINE L1 560 843 -5773 5 676 20006 80 2 8 chr1 11953077 11955257 -185240175 + L1Md_F LINE L1 2458 4622 -1261 5 676 3533 40 0 144 chr1 11955257 11955812 -185239620 - IAPLTR2_Mm LTR ERVK 0 475 1 5 676 20006 80 2 8 chr1 11955812 11956564 -185238868 + L1Md_F LINE L1 4623 5374 -509 5 676 21 71 0 0 chr1 11956821 11956863 -185238569 + AT_rich Low_complexity Low_complexity 1 42 0 5 676 397 149 0 32 chr1 11956921 11957046 -185238386 + (CAGAGA)n Simple_repeat Simple_repeat 4 124 0 5 676 542 346 75 52 chr1 11957636 11958179 -185237253 - L1MEg LINE L1 -3370 2776 2221 5 676 974 252 48 14 chr1 11958181 11958563 -185236869 + Lx8 LINE L1 5537 5927 -1546 5 676 319 279 29 9 chr1 11958710 11958815 -185236617 - L1MEg LINE L1 -4436 1806 1700 5 676 22 0 0 0 chr1 11958829 11958851 -185236581 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 248 120 20 0 chr1 11958853 11958903 -185236529 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 676 679 194 31 72 chr1 11958936 11958981 -185236451 - ORR1D1 LTR MaLR -2 372 338 5 676 1793 176 103 18 chr1 11958981 11959369 -185236063 - MTC LTR MaLR 0 421 1 5 676 679 272 26 40 chr1 11959369 11959650 -185235782 - ORR1D1 LTR MaLR -37 337 1 5 676 600 332 70 52 chr1 11960913 11961212 -185234220 - B4A SINE B4 0 292 2 5 676 267 288 111 112 chr1 11962188 11962706 -185232726 + RLTR20D LTR ERVK 22 566 -126 5 676 21 0 0 0 chr1 11963514 11963535 -185231897 + AT_rich Low_complexity Low_complexity 1 21 0 5 676 237 163 0 0 chr1 11963684 11963733 -185231699 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 5 676 25 0 0 0 chr1 11963803 11963828 -185231604 + AT_rich Low_complexity Low_complexity 1 25 0 5 676 31 0 0 0 chr1 11963978 11964009 -185231423 + AT_rich Low_complexity Low_complexity 1 31 0 5 676 21 0 0 0 chr1 11964973 11964994 -185230438 + AT_rich Low_complexity Low_complexity 1 21 0 5 676 415 277 112 95 chr1 11965978 11966273 -185229159 - ORR1E LTR MaLR 0 359 60 5 676 890 149 0 0 chr1 11966476 11966610 -185228822 + B1_Mur4 SINE Alu 2 135 -15 5 676 876 133 0 0 chr1 11966611 11966791 -185228641 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 676 689 345 13 40 chr1 11967048 11967350 -185228082 - MER67A LTR ERV1 -5 538 245 5 676 392 0 21 0 chr1 11968365 11968413 -185227019 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 676 504 32 0 0 chr1 11968413 11968474 -185226958 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 676 478 358 97 32 chr1 11968496 11968744 -185226688 - B4A SINE B4 -12 280 17 5 676 21 0 0 0 chr1 11969444 11969465 -185225967 + AT_rich Low_complexity Low_complexity 1 21 0 5 676 974 99 148 0 chr1 11969474 11969636 -185225796 - B2_Mm2 SINE B2 -8 187 2 5 676 319 274 110 75 chr1 11970774 11970920 -185224512 - MLT1A LTR MaLR -223 151 1 5 676 1911 195 34 3 chr1 11970985 11971340 -185224092 + ORR1B2 LTR MaLR 1 366 -1 5 676 470 286 19 4 chr1 11976322 11976525 -185218907 - L1M2 LINE L1 -1057 5083 4884 5 676 390 311 42 17 chr1 11976625 11976864 -185218568 - L1MA4 LINE L1 -368 5932 5688 5 676 5050 70 31 3 chr1 11977130 11977805 -185217627 + L1Md_F2 LINE L1 5889 6582 0 5 676 718 267 101 5 chr1 11977990 11978178 -185217254 + B3 SINE B2 3 208 -8 5 676 363 257 148 112 chr1 11980760 11981145 -185214287 + L1MEc LINE L1 765 1163 -5237 5 676 2502 84 5 41 chr1 11981247 11981634 -185213798 - L1_Mus3 LINE L1 -6 6632 6260 5 676 2004 107 26 62 chr1 11981647 11981986 -185213446 + ORR1A2 LTR MaLR 1 327 0 5 676 243 284 77 41 chr1 11982027 11982273 -185213159 + L1MEc LINE L1 1264 1522 -4893 5 676 328 328 58 29 chr1 11982354 11982561 -185212871 + L1MEc LINE L1 1684 1896 -4519 5 676 730 219 150 0 chr1 11982584 11982771 -185212661 - B3 SINE B2 0 216 2 5 676 355 321 55 14 chr1 11982771 11982989 -185212443 + L1MC3 LINE L1 6448 6674 -1111 5 676 240 215 0 106 chr1 11983342 11983446 -185211986 + L1MC3 LINE L1 7679 7771 -14 5 676 441 271 76 16 chr1 11983449 11983764 -185211668 + L1MEc LINE L1 2021 2354 -4046 5 676 345 279 100 25 chr1 11984000 11984279 -185211153 - L1MDa LINE L1 -5020 1613 1314 5 676 297 213 38 62 chr1 11984441 11984521 -185210911 + MER5A DNA MER1_type 107 184 -5 5 676 369 109 0 0 chr1 11984585 11984640 -185210792 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 676 306 338 58 39 chr1 11984820 11984974 -185210458 - ORR1E LTR MaLR -183 176 20 5 676 526 335 97 40 chr1 11985506 11985805 -185209627 + MER2 DNA MER2_type 9 324 -21 5 676 414 101 0 0 chr1 11987101 11987170 -185208262 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 676 674 320 60 23 chr1 11987258 11987523 -185207909 + MER2 DNA MER2_type 8 282 -63 5 676 240 319 235 0 chr1 11987552 11987563 -185207869 + B4 SINE B4 77 220 -69 5 676 394 333 29 0 chr1 11987563 11987668 -185207764 + PB1D7 SINE Alu 7 114 -6 5 676 2234 167 31 14 chr1 11988197 11988611 -185206821 - MTC LTR MaLR 0 421 1 5 676 224 137 0 19 chr1 11988683 11988735 -185206697 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 5 676 485 331 25 19 chr1 11988738 11988895 -185206537 - RSINE1 SINE B4 -3 162 5 5 676 23 0 0 0 chr1 11989283 11989306 -185206126 + AT_rich Low_complexity Low_complexity 1 23 0 5 676 4414 81 12 0 chr1 11991303 11991949 -185203483 - L1_Mur1 LINE L1 -1260 4626 3973 5 676 6583 145 30 31 chr1 11991951 11993270 -185202162 - Lx4A LINE L1 -182 6876 5539 5 676 213 256 0 25 chr1 11993605 11993685 -185201747 + A-rich Low_complexity Low_complexity 3 80 0 5 676 213 178 0 0 chr1 11993851 11993896 -185201536 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 676 180 0 0 0 chr1 11994252 11994272 -185201160 + (T)n Simple_repeat Simple_repeat 1 20 0 5 676 2955 284 71 25 chr1 11994439 11994793 -185200639 - Lx9 LINE L1 -20 7624 7222 5 676 3140 66 27 5 chr1 11994793 11995204 -185200228 - L1Md_F2 LINE L1 -12 6570 6151 5 676 2955 284 71 25 chr1 11995204 11996070 -185199362 - Lx9 LINE L1 -423 7221 6347 5 676 807 98 0 0 chr1 11996082 11996214 -185199218 + (GA)n Simple_repeat Simple_repeat 1 132 0 5 676 716 340 41 48 chr1 11996930 11997199 -185198233 + B4 SINE B4 8 274 -18 5 676 423 0 0 0 chr1 11997700 11997747 -185197685 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 676 309 89 0 0 chr1 11998565 11998610 -185196822 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 676 1476 34 0 0 chr1 11998705 11998883 -185196549 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 6 676 558 200 0 0 chr1 11999798 11999929 -185195503 + CT-rich Low_complexity Low_complexity 35 165 0 6 676 189 0 0 0 chr1 11999929 11999950 -185195482 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 676 558 200 0 0 chr1 11999950 11999983 -185195449 + polypyrimidine Low_complexity Low_complexity 2 34 0 6 676 272 181 12 0 chr1 12000296 12000379 -185195053 + GA-rich Low_complexity Low_complexity 2 85 0 1 676 410 358 130 44 chr1 12001499 12001908 -185193524 + MLT1F2 LTR MaLR 11 454 -106 2 676 318 231 62 46 chr1 12002723 12002857 -185192575 - MTEa LTR MaLR -3 376 237 3 676 513 47 0 0 chr1 12002913 12002977 -185192455 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 676 537 278 13 13 chr1 12003371 12003524 -185191908 + Lx8 LINE L1 6323 6475 -998 5 676 2015 179 79 3 chr1 12003528 12003919 -185191513 + MTC LTR MaLR 1 421 0 6 676 986 183 30 52 chr1 12003921 12004270 -185191162 + MTC-int LTR MaLR 5 247 -1011 6 676 697 260 34 11 chr1 12004286 12004461 -185190971 - B2_Mm2 SINE B2 -14 181 3 7 676 363 159 43 34 chr1 12004462 12004579 -185190853 + MTC-int LTR MaLR 1087 1204 -54 6 676 914 267 75 5 chr1 12004655 12005175 -185190257 + RMER1B Other Other 95 787 -279 8 676 295 216 82 0 chr1 12005176 12005273 -185190159 + RMER1A Other Other 924 1028 -2 8 676 296 203 203 0 chr1 12005286 12005355 -185190077 + MTC LTR MaLR 4 86 -335 9 676 1763 196 24 32 chr1 12005406 12005465 -185189967 + ORR1B2 LTR MaLR 1 65 -302 1 676 1539 154 127 104 chr1 12005465 12005850 -185189582 - ORR1B1 LTR MaLR 0 394 1 1 676 1763 196 24 32 chr1 12005850 12006160 -185189272 + ORR1B2 LTR MaLR 66 366 -1 1 676 1239 204 26 4 chr1 12006162 12006393 -185189039 + MTC LTR MaLR 186 421 0 1 676 378 0 0 0 chr1 12006657 12006699 -185188733 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 676 880 185 4 8 chr1 12007994 12008261 -185187171 + GA-rich Low_complexity Low_complexity 1 266 0 1 676 252 0 0 0 chr1 12008261 12008289 -185187143 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 676 587 51 13 0 chr1 12008290 12008369 -185187063 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1 676 1532 274 0 20 chr1 12008786 12009191 -185186241 - MERVL_2A-int LTR ERVL -3263 2498 2102 1 676 1719 245 5 26 chr1 12009240 12009618 -185185814 - ORR1D1 LTR MaLR -4 370 1 1 676 207 162 0 0 chr1 12009831 12009868 -185185564 + (CCA)n Simple_repeat Simple_repeat 1 37 0 1 676 385 265 97 25 chr1 12009912 12010184 -185185248 + L1M2 LINE L1 2223 2518 -4331 2 676 351 0 0 0 chr1 12010274 12010313 -185185119 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 676 2599 98 3 13 chr1 12010819 12011200 -185184232 + RLTR9E LTR ERVK 33 409 0 2 676 236 253 23 11 chr1 12011246 12011334 -185184098 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 676 498 125 0 0 chr1 12011353 12011433 -185183999 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 2 676 243 189 0 0 chr1 12011427 12011480 -185183952 + GA-rich Low_complexity Low_complexity 2 54 0 2 676 410 220 57 0 chr1 12011505 12011664 -185183768 + L1M2 LINE L1 3785 3952 -2893 2 676 336 270 147 22 chr1 12011685 12011857 -185183575 + L1M2 LINE L1 5432 5631 -1214 2 676 438 20 0 0 chr1 12011857 12011908 -185183524 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 676 336 270 147 22 chr1 12011908 12012008 -185183424 + L1M2 LINE L1 5632 5737 -1108 2 676 1073 98 0 14 chr1 12012031 12012176 -185183256 + B1_Mus2 SINE Alu 5 147 0 2 676 359 309 49 44 chr1 12012195 12012349 -185183083 + L1M2 LINE L1 5741 5891 -954 2 676 180 111 0 0 chr1 12012349 12012376 -185183056 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 676 359 309 49 44 chr1 12012376 12012404 -185183028 + L1M2 LINE L1 5892 5923 -922 2 676 2199 121 19 202 chr1 12012531 12013121 -185182311 + RLTR45 LTR ERVK 1 482 0 2 676 3553 168 86 144 chr1 12013385 12013910 -185181522 - L1_Mur3 LINE L1 -3176 2704 2178 3 676 1027 73 7 0 chr1 12013910 12014047 -185181385 - B1_Mm SINE Alu 0 147 10 3 676 3553 168 86 144 chr1 12014047 12015576 -185179856 - L1_Mur3 LINE L1 -3176 2177 641 3 676 1380 250 99 48 chr1 12015612 12016087 -185179345 - RLTR20B3 LTR ERVK -58 519 21 3 676 1213 218 52 16 chr1 12016091 12016399 -185179033 - L1_Mur3 LINE L1 -7324 404 86 3 676 551 292 5 93 chr1 12018214 12018418 -185177014 + B3A SINE B2 1 186 -12 3 676 25 51 0 0 chr1 12018582 12018621 -185176811 + AT_rich Low_complexity Low_complexity 1 39 0 3 676 212 167 71 0 chr1 12018661 12018745 -185176687 + (GTGTG)n Simple_repeat Simple_repeat 3 92 0 3 676 757 296 46 11 chr1 12020738 12021001 -185174431 + RCHARR1 DNA MER1_type 10 281 -693 3 676 1341 256 43 23 chr1 12021009 12021404 -185174028 + RCHARR1 DNA MER1_type 394 796 -178 3 676 315 351 43 43 chr1 12021481 12021621 -185173811 - B4A SINE B4 -127 165 26 3 676 376 240 86 72 chr1 12021712 12021851 -185173581 + ID_B1 SINE B4 78 218 -6 3 676 654 214 0 8 chr1 12021727 12021854 -185173578 + B1_Mus2 SINE Alu 19 144 -3 3 676 399 206 24 12 chr1 12022480 12022647 -185172785 + CT-rich Low_complexity Low_complexity 2 170 0 4 676 324 94 0 0 chr1 12022675 12022728 -185172704 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 4 676 319 195 24 83 chr1 12023558 12023642 -185171790 - B3 SINE B2 -135 81 3 4 676 728 99 9 0 chr1 12023652 12023763 -185171669 + (TC)n Simple_repeat Simple_repeat 1 112 0 4 676 195 42 0 0 chr1 12023794 12023818 -185171614 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 676 1715 198 62 6 chr1 12024049 12024094 -185171338 + ORR1B2 LTR MaLR 1 45 -322 4 676 2163 158 10 52 chr1 12024094 12024494 -185170938 + RLTR9A2 LTR ERVK 1 383 0 4 676 1715 198 62 6 chr1 12024494 12024788 -185170644 + ORR1B2 LTR MaLR 46 359 -8 4 676 369 0 0 0 chr1 12025788 12025829 -185169603 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 676 351 145 0 0 chr1 12025829 12025898 -185169534 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 676 552 30 0 0 chr1 12025927 12025993 -185169439 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 4 676 1579 177 55 14 chr1 12026019 12026358 -185169074 + MTC LTR MaLR 1 421 0 5 676 2864 119 44 42 chr1 12026708 12027190 -185168242 - RLTR1C LTR ERV1 -20 483 1 5 676 235 340 49 49 chr1 12027588 12027752 -185167680 + RSINE1 SINE B4 2 165 0 5 676 2447 117 34 123 chr1 12028038 12028566 -185166866 + RMER17D LTR ERVK 2 482 -327 5 676 2799 31 2 177 chr1 12028574 12029042 -185166390 - RLTR10 LTR ERVK -4 386 1 5 676 15496 20 1 50 chr1 12029044 12031069 -185164363 - RLTR10-int LTR ERVK -3 1984 58 5 676 1786 207 58 58 chr1 12031069 12031150 -185164282 + RMER17D LTR ERVK 399 470 -436 5 676 2799 31 2 177 chr1 12031150 12031618 -185163814 - RLTR10 LTR ERVK -4 386 1 5 676 648 0 0 0 chr1 12031622 12031694 -185163738 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 5 676 2847 107 21 2 chr1 12031694 12032119 -185163313 + RMER17D LTR ERVK 452 884 -5 5 676 201 119 23 23 chr1 12032125 12032168 -185163264 + T-rich Low_complexity Low_complexity 3 45 0 5 676 1706 229 83 16 chr1 12032186 12032629 -185162803 + Lx5 LINE L1 6569 7041 -9 5 676 2651 46 61 0 chr1 12032686 12033012 -185162420 + ORR1A1 LTR MaLR 1 346 0 6 676 2420 250 65 0 chr1 12033018 12033603 -185161829 - Lx5 LINE L1 0 7050 6428 6 676 198 222 0 0 chr1 12033671 12033725 -185161707 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 676 886 247 87 32 chr1 12033799 12034146 -185161286 + Lx9 LINE L1 6693 7058 -586 6 676 274 117 0 32 chr1 12034377 12034439 -185160993 - L1_Mus3 LINE L1 0 6638 6579 6 676 3070 60 402 7 chr1 12034439 12035013 -185160419 + L1_Mm LINE L1 5042 5842 -41 6 676 641 101 0 0 chr1 12035011 12035110 -185160322 + L1Md_F3 LINE L1 6226 6324 -260 6 676 21519 54 7 2 chr1 12035107 12038620 -185156812 + L1Md_F2 LINE L1 2912 6439 -143 6 676 24 67 0 0 chr1 12038697 12038742 -185156690 + AT_rich Low_complexity Low_complexity 1 45 0 6 676 378 316 6 62 chr1 12038760 12038922 -185156510 + RSINE1 SINE B4 3 155 -10 6 676 335 277 14 11 chr1 12038976 12039065 -185156367 + ID4 SINE ID 12 101 -51 7 676 798 325 33 29 chr1 12039146 12039419 -185156013 + MTEa LTR MaLR 1 274 -105 7 676 288 0 0 0 chr1 12039742 12039774 -185155658 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 676 3527 40 68 22 chr1 12039775 12040229 -185155203 - MT2C_Mm LTR ERVL 0 475 1 7 676 225 65 0 0 chr1 12040234 12040265 -185155167 + (T)n Simple_repeat Simple_repeat 1 31 0 7 676 343 235 123 0 chr1 12041477 12041558 -185153874 - PB1D10 SINE Alu -1 116 26 7 676 282 29 0 0 chr1 12041590 12041625 -185153807 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 676 375 78 0 0 chr1 12043124 12043175 -185152257 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 676 557 122 0 0 chr1 12043779 12043877 -185151555 - L1Md_F2 LINE L1 -12 6570 6473 7 676 479 281 50 17 chr1 12044185 12044366 -185151066 + MER5A DNA MER1_type 1 187 -2 7 676 216 97 0 0 chr1 12044828 12044859 -185150573 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 676 239 267 103 21 chr1 12044876 12045009 -185150423 - MER63D DNA AcHobo -665 396 313 8 676 1957 160 62 83 chr1 12047808 12048230 -185147202 - MTC LTR MaLR -8 413 1 8 676 5764 117 3 4 chr1 12048409 12049324 -185146108 + L1_Mm LINE L1 4296 5209 -674 8 676 2355 126 37 72 chr1 12049715 12050176 -185145256 + BGLII_A LTR ERVK 1 445 0 8 676 348 306 45 125 chr1 12050230 12050428 -185145004 + MER31B LTR ERV1 4 179 -287 8 676 2752 85 55 0 chr1 12050428 12050827 -185144605 - BGLII LTR ERVK 0 421 1 8 676 348 306 45 125 chr1 12050827 12050852 -185144580 + MER31B LTR ERV1 180 208 -258 8 676 227 29 0 54 chr1 12050855 12050892 -185144540 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 8 676 626 37 12 0 chr1 12052039 12052120 -185143312 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 8 676 709 180 199 42 chr1 12052984 12053175 -185142257 - URR1B DNA MER1_type 0 225 5 8 676 1085 73 0 0 chr1 12054836 12054973 -185140459 + B1_Mm SINE Alu 1 137 -10 9 676 273 57 0 0 chr1 12054973 12055008 -185140424 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 676 342 0 0 0 chr1 12055144 12055182 -185140250 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 676 188 34 0 33 chr1 12055798 12055828 -185139604 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 676 1138 88 0 0 chr1 12055838 12055985 -185139447 - B1_Mus2 SINE Alu 0 147 1 9 676 1257 80 0 0 chr1 12056022 12056286 -185139146 + (TTCTC)n Simple_repeat Simple_repeat 1 264 0 9 676 222 37 0 0 chr1 12056287 12056314 -185139118 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 9 676 324 70 0 0 chr1 12056382 12056425 -185139007 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 676 471 35 0 0 chr1 12058076 12058133 -185137299 + (CATA)n Simple_repeat Simple_repeat 3 59 0 9 676 249 220 0 17 chr1 12058200 12058260 -185137172 - MLT1D LTR MaLR 0 505 447 9 676 269 236 11 40 chr1 12058268 12058360 -185137072 + B3A SINE B2 3 96 -99 1 676 309 176 81 12 chr1 12058373 12058459 -185136973 + L1_Mur3 LINE L1 4515 4637 -1506 1 84 427 289 97 36 chr1 12058546 12058937 -185136495 + L1MA4 LINE L1 5518 5932 -368 1 677 1271 289 74 42 chr1 12058939 12059387 -185136045 + MT2A LTR ERVL 3 464 -69 1 677 4596 144 37 3 chr1 12059737 12060488 -185134944 - Lx2A LINE L1 0 7008 6232 1 677 3872 146 48 11 chr1 12060490 12060801 -185134631 - Lx2A LINE L1 -877 6131 5793 1 677 201 39 0 0 chr1 12060801 12060827 -185134605 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 677 1051 75 0 0 chr1 12060829 12060962 -185134470 - B1_Mus1 SINE Alu -11 137 5 1 677 3872 180 12 11 chr1 12060962 12061619 -185133813 - Lx2A LINE L1 -85 5792 5131 1 677 1376 159 83 3 chr1 12061608 12061898 -185133534 - L1VL2 LINE L1 -5520 815 503 1 677 25 0 0 0 chr1 12062377 12062402 -185133030 + AT_rich Low_complexity Low_complexity 1 25 0 1 677 579 264 73 51 chr1 12063021 12063260 -185132172 - MER58B DNA MER1_type -47 294 47 1 677 238 373 52 25 chr1 12063504 12063792 -185131640 + ORR1E LTR MaLR 33 350 -29 1 677 2872 71 5 3 chr1 12064448 12064831 -185130601 + L1_Mus2 LINE L1 6183 6566 0 1 677 21 36 0 0 chr1 12064996 12065024 -185130408 + AT_rich Low_complexity Low_complexity 1 28 0 1 677 1085 62 7 14 chr1 12065129 12065277 -185130155 + B1_Mus1 SINE Alu 1 147 -1 1 677 264 77 0 0 chr1 12065295 12065334 -185130098 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 677 35590 32 10 17 chr1 12065497 12069971 -185125461 + L1Md_A LINE L1 452 4930 -953 1 677 226 133 0 82 chr1 12069971 12070020 -185125412 - RMER20A LTR ERVK -286 230 186 1 677 35590 32 10 17 chr1 12070020 12070674 -185124758 + L1Md_A LINE L1 4931 5586 -297 1 677 8504 30 0 0 chr1 12070674 12071669 -185123763 + L1Md_T LINE L1 5587 6581 -1 1 677 48 53 0 0 chr1 12071716 12071792 -185123640 + AT_rich Low_complexity Low_complexity 1 76 0 1 677 315 201 19 19 chr1 12071813 12071970 -185123462 + (TA)n Simple_repeat Simple_repeat 2 158 0 1 677 228 278 20 20 chr1 12071982 12072081 -185123351 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 1 677 261 98 0 0 chr1 12072478 12072519 -185122913 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 677 665 304 5 24 chr1 12072950 12072970 -185122462 - B3 SINE B2 -11 205 189 1 677 242 56 28 0 chr1 12072970 12073006 -185122426 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 677 665 304 5 24 chr1 12073006 12073194 -185122238 - B3 SINE B2 -28 188 1 1 677 944 299 33 13 chr1 12073347 12073780 -185121652 - Lx6 LINE L1 -469 5822 5409 1 677 21 0 0 0 chr1 12073846 12073867 -185121565 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 253 197 40 0 chr1 12073981 12074042 -185121390 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 677 423 0 0 0 chr1 12074042 12074089 -185121343 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 677 253 197 40 0 chr1 12074089 12074103 -185121329 + (TA)n Simple_repeat Simple_repeat 1 15 0 1 677 309 222 36 36 chr1 12074367 12074451 -185120981 + MER34A LTR ERV1 1 84 -487 1 677 967 230 43 5 chr1 12075661 12075871 -185119561 - ORR1D2 LTR MaLR -1 369 152 1 677 536 301 14 71 chr1 12075868 12076079 -185119353 - MTD LTR MaLR -11 408 210 1 677 4938 97 14 52 chr1 12076079 12076728 -185118704 - L1VL4 LINE L1 -1885 1674 1060 1 677 1103 88 7 0 chr1 12076728 12076875 -185118557 - B1_Mus1 SINE Alu 0 148 1 1 677 4938 128 5 36 chr1 12076875 12077562 -185117870 - L1VL4 LINE L1 -2500 1059 388 1 677 367 232 0 12 chr1 12077563 12077646 -185117786 - ORR1D2 LTR MaLR -339 82 1 1 677 381 213 62 16 chr1 12077659 12077788 -185117644 - ORR1D2-int LTR MaLR -23 1235 1101 1 677 449 305 69 0 chr1 12077789 12077920 -185117512 + RSINE1 SINE B4 4 143 -22 1 677 432 0 0 0 chr1 12077938 12077986 -185117446 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 677 1145 258 107 61 chr1 12077986 12078456 -185116976 - ORR1D2-int LTR MaLR -149 1109 617 1 677 518 285 103 15 chr1 12078459 12078662 -185116770 - Lx8 LINE L1 -517 6956 6736 1 677 249 33 0 0 chr1 12078730 12078760 -185116672 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 677 2920 229 19 12 chr1 12079187 12079917 -185115515 + Lx2B LINE L1 6311 7053 -5 1 677 1600 300 76 71 chr1 12079963 12080408 -185115024 - RMER15-int LTR ERVL -31 4968 4554 1 677 3176 51 18 0 chr1 12080408 12080797 -185114635 + MTA_Mm LTR MaLR 1 396 0 1 677 1600 300 76 71 chr1 12080797 12081169 -185114263 - RMER15-int LTR ERVL -446 4553 4147 1 677 23 0 0 0 chr1 12081301 12081324 -185114108 + AT_rich Low_complexity Low_complexity 1 23 0 1 677 296 333 57 14 chr1 12082365 12082505 -185112927 - MLT1J LTR MaLR -332 180 35 1 677 426 244 30 33 chr1 12084691 12084827 -185110605 - PB1D9 SINE Alu -2 145 12 1 677 459 87 0 0 chr1 12085119 12085188 -185110244 + L1Md_F2 LINE L1 6502 6570 -12 1 677 1763 119 31 22 chr1 12085424 12085743 -185109689 - RLTRETN_Mm LTR ERVK 0 322 1 1 677 181 177 31 31 chr1 12085759 12085823 -185109609 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1 677 565 291 75 21 chr1 12086190 12086429 -185109003 - ORR1E LTR MaLR -107 252 1 1 677 19409 120 16 7 chr1 12086548 12090538 -185104894 + L1_Mus3 LINE L1 446 4726 -1154 1 677 216 0 0 0 chr1 12090538 12090562 -185104870 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 677 17281 162 46 6 chr1 12090562 12092434 -185102998 + L1_Mus3 LINE L1 4727 6595 -43 1 677 261 0 0 0 chr1 12092434 12092463 -185102969 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 677 24 32 0 0 chr1 12092663 12092694 -185102738 + AT_rich Low_complexity Low_complexity 1 31 0 1 677 432 224 0 0 chr1 12093164 12093240 -185102192 + MTE2b LTR MaLR 4 79 -300 1 677 1823 305 137 67 chr1 12093260 12094025 -185101407 + MTE-int LTR MaLR 733 1551 -29 1 677 271 361 0 35 chr1 12094077 12094163 -185101269 + B3 SINE B2 73 155 -61 1 677 819 245 83 112 chr1 12094201 12094552 -185100880 + MT2A LTR ERVL 3 471 -130 1 677 180 0 0 0 chr1 12094553 12094573 -185100859 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 677 30901 94 2 4 chr1 12094624 12096472 -185098960 - L1_Mus1 LINE L1 0 6567 4743 1 677 1618 36 0 10 chr1 12096472 12096666 -185098766 - B2_Mm1a SINE B2 0 193 2 1 677 30901 111 3 8 chr1 12096666 12097357 -185098075 - L1_Mus1 LINE L1 -1141 4742 4048 1 677 3271 40 2 0 chr1 12097357 12097752 -185097680 - MTA_Mm LTR MaLR 0 396 1 1 677 30901 118 18 7 chr1 12097752 12101360 -185094072 - L1_Mus1 LINE L1 -1836 4047 386 1 677 463 260 105 24 chr1 12101360 12101474 -185093958 + MT2B2 LTR ERVL 314 523 -61 1 677 425 35 35 0 chr1 12101474 12101532 -185093900 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1 677 463 254 95 22 chr1 12101532 12101577 -185093855 + MT2B2 LTR ERVL 524 581 -3 1 677 751 307 61 102 chr1 12101666 12102068 -185093364 + MTE2b LTR MaLR 1 379 0 1 677 1784 145 36 54 chr1 12102365 12102700 -185092732 + ORR1A4 LTR MaLR 1 329 0 1 677 786 286 43 65 chr1 12103217 12103449 -185091983 + B4A SINE B4 2 228 -64 1 677 197 385 0 0 chr1 12103901 12103966 -185091466 + MIR3 SINE MIR 126 190 -18 1 677 752 0 11 0 chr1 12104228 12104316 -185091116 + (TTC)n Simple_repeat Simple_repeat 1 89 0 1 677 211 361 49 43 chr1 12106194 12106379 -185089053 + L2 LINE L2 1474 1659 -1760 1 677 209 357 111 10 chr1 12107373 12107472 -185087960 + MIR SINE MIR 37 145 -63 1 677 632 293 17 0 chr1 12108389 12108563 -185086869 + B3 SINE B2 34 210 -6 1 677 2472 61 52 6 chr1 12109181 12109529 -185085903 + MTA_Mm-int LTR MaLR 735 1098 0 1 677 2628 64 0 3 chr1 12109529 12109872 -185085560 + MTA_Mm LTR MaLR 1 342 -54 1 677 562 321 15 15 chr1 12110011 12110283 -185085149 + L1MA6 LINE L1 5924 6195 -105 1 677 948 65 0 0 chr1 12110675 12110799 -185084633 + B1_Mus1 SINE Alu 16 139 -9 1 677 979 58 7 14 chr1 12110889 12111029 -185084403 + (TTTTC)n Simple_repeat Simple_repeat 2 140 0 1 677 281 135 19 0 chr1 12112162 12112214 -185083218 + GA-rich Low_complexity Low_complexity 3 55 0 1 677 1172 248 45 10 chr1 12113798 12114061 -185081371 - Lx6 LINE L1 -177 7283 7018 1 677 390 21 0 0 chr1 12114061 12114108 -185081324 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 677 1172 248 45 10 chr1 12114108 12114158 -185081274 - Lx6 LINE L1 -443 7017 6960 1 677 3348 168 18 1 chr1 12114169 12114842 -185080590 - L1_Mur3 LINE L1 -1608 4272 3589 1 677 228 243 64 29 chr1 12114872 12115012 -185080420 + L1MB5 LINE L1 6029 6173 -1 1 677 725 223 122 5 chr1 12115026 12115215 -185080217 - B3 SINE B2 -5 211 1 1 677 418 229 60 0 chr1 12115221 12115304 -185080128 - PB1D10 SINE Alu -8 109 22 1 677 673 248 81 0 chr1 12115235 12115384 -185080048 - ID_B1 SINE B4 -53 171 11 1 677 369 0 0 0 chr1 12115933 12115974 -185079458 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 677 7070 87 13 16 chr1 12116247 12116838 -185078594 - L1_Mus4 LINE L1 0 6636 6055 1 677 2819 98 5 17 chr1 12116838 12117252 -185078180 + RLTR9E LTR ERVK 1 409 0 1 677 7070 137 16 9 chr1 12117252 12118650 -185076782 - L1_Mus4 LINE L1 -582 6054 4636 1 677 189 0 0 0 chr1 12118650 12118671 -185076761 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 677 7456 43 2 25 chr1 12118673 12119771 -185075661 - L1Md_F2 LINE L1 -25 6557 5485 1 677 655 159 8 0 chr1 12119791 12119917 -185075515 - L1_Mus4 LINE L1 -1213 4670 4544 1 677 606 282 0 67 chr1 12120890 12121099 -185074333 - B3A SINE B2 -3 195 1 1 677 210 222 16 16 chr1 12121301 12121365 -185074067 + T-rich Low_complexity Low_complexity 2 65 0 1 677 807 332 59 0 chr1 12121372 12121628 -185073804 + MTE2b LTR MaLR 1 271 -108 1 677 3576 303 92 13 chr1 12121677 12122663 -185072769 + MTE2b-int LTR MaLR 12 1101 -479 1 677 315 0 0 0 chr1 12122663 12122698 -185072734 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 677 3576 303 92 13 chr1 12122698 12122963 -185072469 + MTE2b-int LTR MaLR 1102 1362 -218 1 677 288 0 0 0 chr1 12122971 12123003 -185072429 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 677 385 301 22 14 chr1 12123166 12123304 -185072128 + MTE2b-int LTR MaLR 1353 1491 -89 1 677 215 215 30 30 chr1 12123432 12123456 -185071976 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 677 291 122 0 0 chr1 12123456 12123505 -185071927 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 677 215 215 30 30 chr1 12123505 12123547 -185071885 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 1 677 357 242 137 32 chr1 12123693 12123817 -185071615 + Lx7 LINE L1 7039 7175 -521 1 677 401 288 15 22 chr1 12123818 12123953 -185071479 + MTE2b-int LTR MaLR 1445 1578 -2 1 677 649 310 54 0 chr1 12123965 12124168 -185071264 + MTE2b LTR MaLR 6 219 -160 1 677 315 0 0 0 chr1 12124394 12124429 -185071003 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 677 365 0 22 0 chr1 12124429 12124473 -185070959 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 677 1150 264 43 60 chr1 12124474 12124844 -185070588 + MTE2b LTR MaLR 16 379 0 1 677 225 210 15 75 chr1 12124927 12124994 -185070438 - ID_B1 SINE B4 -78 146 84 2 677 269 210 2 3 chr1 12124936 12124995 -185070437 - B1_Mus1 SINE Alu -90 59 2 2 677 734 348 116 15 chr1 12126114 12126520 -185068912 + MER70A LTR ERVL 26 472 0 2 677 216 23 43 65 chr1 12126592 12126638 -185068794 + (TTCCC)n Simple_repeat Simple_repeat 1 45 0 2 677 330 288 176 0 chr1 12126656 12126781 -185068651 - HAL1-3A_ME LINE L1 -420 2438 2292 2 677 264 248 18 27 chr1 12126782 12126894 -185068538 + C-rich Low_complexity Low_complexity 5 115 0 2 677 812 83 16 0 chr1 12126894 12127015 -185068417 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 2 677 318 341 103 10 chr1 12127382 12127586 -185067846 + Tigger13a DNA MER2_type 466 688 -83 2 677 234 91 0 0 chr1 12127701 12127734 -185067698 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 2 677 279 176 65 0 chr1 12129171 12129279 -185066153 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 677 237 190 63 0 chr1 12129795 12129874 -185065558 + A-rich Low_complexity Low_complexity 3 86 0 2 677 189 0 0 0 chr1 12130843 12130864 -185064568 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 677 396 0 0 0 chr1 12131460 12131504 -185063928 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 677 572 259 71 0 chr1 12132373 12132543 -185062889 - Lx8 LINE L1 -996 6477 6296 2 677 1639 289 120 28 chr1 12132689 12134050 -185061382 - L1M2 LINE L1 -2299 4546 3060 2 677 2949 85 88 11 chr1 12134050 12134491 -185060941 - MT2C_Mm LTR ERVL 0 475 1 2 677 1639 289 120 28 chr1 12134491 12134607 -185060825 - L1M2 LINE L1 -3786 3059 2933 2 677 294 216 114 0 chr1 12134865 12134953 -185060479 - L1M2 LINE L1 -4275 2574 2477 2 677 236 295 51 41 chr1 12135159 12135452 -185059980 - L1M2 LINE L1 -4607 2242 1947 2 677 35 41 0 0 chr1 12135590 12135639 -185059793 + AT_rich Low_complexity Low_complexity 1 49 0 2 677 414 69 0 0 chr1 12135639 12135697 -185059735 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 677 459 268 30 75 chr1 12135785 12135918 -185059514 - RSINE1 SINE B4 -35 130 4 2 677 248 357 19 6 chr1 12135933 12136091 -185059341 - L1M2 LINE L1 -5125 1724 1565 2 677 3416 38 0 0 chr1 12137288 12137684 -185057748 + MTA_Mm LTR MaLR 1 396 0 2 677 1648 236 54 27 chr1 12137890 12138353 -185057079 + RMER20B LTR ERVK 1 479 -37 2 677 430 283 60 19 chr1 12138618 12138786 -185056646 - MIRb SINE MIR -57 211 31 2 677 2326 143 17 39 chr1 12138929 12139336 -185056096 - RMER10B LTR ERVL 0 398 1 2 677 1327 273 91 2 chr1 12139519 12139949 -185055483 - Lx7 LINE L1 -399 7297 6830 2 677 499 339 55 0 chr1 12140367 12140494 -185054938 + B3A SINE B2 1 134 -64 2 677 382 324 159 19 chr1 12140938 12141253 -185054179 - L1M5 LINE L1 -439 5685 5327 2 677 252 384 53 27 chr1 12141296 12141446 -185053986 + ID_B1 SINE B4 16 169 -55 2 677 220 281 15 15 chr1 12141389 12141454 -185053978 + PB1D10 SINE Alu 32 96 -21 2 677 250 250 76 0 chr1 12142681 12142773 -185052659 - L1ME3A LINE L1 -27 6146 6048 2 677 22163 55 5 3 chr1 12143772 12147470 -185047962 - L1Md_F3 LINE L1 -15 6569 2866 2 677 9072 58 1 0 chr1 12147487 12149382 -185046050 - L1Md_F2 LINE L1 0 6582 4686 2 677 12226 92 13 10 chr1 12149357 12151876 -185043556 - L1Md_F2 LINE L1 -2943 2940 414 2 677 300 316 11 0 chr1 12151938 12152033 -185043399 - Lx8 LINE L1 -134 7339 7244 2 677 492 18 0 0 chr1 12152642 12152699 -185042733 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 677 548 29 0 14 chr1 12152727 12152798 -185042634 + (TTCCC)n Simple_repeat Simple_repeat 1 70 0 2 677 729 129 0 0 chr1 12152799 12152915 -185042517 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 2 677 1299 101 11 5 chr1 12153014 12153203 -185042229 - B2_Mm2 SINE B2 -5 190 1 2 677 927 293 65 22 chr1 12153666 12154036 -185041396 + MLT1B LTR MaLR 3 388 -2 2 677 24024 138 17 7 chr1 12154214 12157515 -185037917 - L1_Mus4 LINE L1 -6 6630 3309 2 677 198 0 0 0 chr1 12157515 12157537 -185037895 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2 677 24024 151 13 9 chr1 12157537 12159998 -185035434 - L1_Mus4 LINE L1 -2575 3308 820 2 677 540 166 47 24 chr1 12160028 12160220 -185035212 - RLTR1B-int LTR ERV1 -2115 1184 1021 2 677 561 74 0 78 chr1 12160230 12160332 -185035100 - RLTR1B-int LTR ERV1 -2257 1042 949 2 677 1837 132 3 13 chr1 12160413 12160712 -185034720 - MMVL30-int LTR ERV1 -2245 1453 1158 2 677 425 119 147 85 chr1 12161090 12161219 -185034213 - MMVL30-int LTR ERV1 -2830 469 333 2 677 651 194 34 68 chr1 12161251 12161611 -185033821 - MMVL30-int LTR ERV1 -7140 416 1 2 677 1447 221 86 6 chr1 12161611 12161961 -185033471 - RLTR1B LTR ERV1 0 512 135 2 677 3587 68 2 0 chr1 12162053 12162539 -185032893 + L1_Mus2 LINE L1 5673 6159 -407 2 677 1069 184 28 107 chr1 12162539 12162880 -185032552 - RLTRETN_Mm LTR ERVK 0 409 1 2 677 2846 86 14 45 chr1 12162880 12163305 -185032127 + L1_Mus2 LINE L1 6155 6566 0 2 677 2873 201 157 18 chr1 12163305 12163999 -185031433 + RLTR25A LTR ERVK 308 1103 0 2 677 2322 282 67 19 chr1 12164011 12164838 -185030594 - Lx9 LINE L1 -473 7171 6306 2 677 479 297 55 17 chr1 12164989 12165280 -185030152 - L1_Mur3 LINE L1 -464 5416 5115 2 677 497 267 0 68 chr1 12165513 12165674 -185029758 - RMER1B Other Other -728 338 189 2 677 881 227 130 8 chr1 12165683 12165936 -185029496 - RMER1B Other Other -717 349 66 2 677 1149 97 0 0 chr1 12166090 12166255 -185029177 + (TTCTC)n Simple_repeat Simple_repeat 2 166 0 2 677 353 255 65 123 chr1 12166261 12166282 -185029150 - B4A SINE B4 -59 233 216 2 677 1271 78 0 11 chr1 12166282 12166464 -185028968 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 677 884 119 0 16 chr1 12166465 12166593 -185028839 - B1_Mus1 SINE Alu -13 135 10 2 677 455 255 65 123 chr1 12166593 12166612 -185028820 - B4 SINE B4 -77 214 73 2 677 241 390 9 0 chr1 12166632 12166655 -185028777 - ID_B1 SINE B4 -1 223 118 2 677 312 329 37 0 chr1 12166655 12166737 -185028695 - B1F SINE Alu -28 121 37 2 677 370 85 0 33 chr1 12166745 12166806 -185028626 - RMER21A LTR ERV1 -532 415 357 2 677 3100 14 0 0 chr1 12166824 12167194 -185028238 + L1Md_T LINE L1 5217 5586 -297 2 677 8516 31 0 0 chr1 12167194 12168190 -185027242 + L1Md_T LINE L1 5587 6582 0 2 677 1654 172 83 53 chr1 12168193 12168554 -185026878 + RMER21A LTR ERV1 507 878 -69 2 677 203 281 62 0 chr1 12168635 12168699 -185026733 + MIR3 SINE MIR 98 165 -43 2 677 273 269 138 28 chr1 12169969 12170114 -185025318 + L2a LINE L2 3262 3422 -4 2 677 234 0 0 0 chr1 12171631 12171657 -185023775 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 677 459 35 0 0 chr1 12171657 12171713 -185023719 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 677 1158 175 63 0 chr1 12172003 12172272 -185023160 - Lx9 LINE L1 -5 7639 7354 2 677 22650 179 15 26 chr1 12172307 12173863 -185021569 + L1_Mus4 LINE L1 552 2004 -3879 2 677 7491 55 25 22 chr1 12173863 12174856 -185020576 + L1Md_F2 LINE L1 5587 6582 0 2 677 22650 147 15 29 chr1 12174856 12179465 -185015967 + L1_Mus4 LINE L1 2005 6629 -7 2 677 36 23 0 0 chr1 12179496 12179539 -185015893 + AT_rich Low_complexity Low_complexity 1 43 0 2 677 291 213 0 0 chr1 12181444 12181519 -185013913 + T-rich Low_complexity Low_complexity 1 75 0 2 677 353 285 39 78 chr1 12182161 12182340 -185013092 - MER5B DNA MER1_type -5 173 2 2 677 216 158 0 0 chr1 12182965 12183003 -185012429 + CT-rich Low_complexity Low_complexity 4 41 0 2 677 582 218 0 9 chr1 12184613 12184724 -185010708 - PB1D9 SINE Alu -10 110 1 2 677 476 284 91 79 chr1 12184860 12185085 -185010347 + B3A SINE B2 6 216 0 2 677 538 302 23 0 chr1 12185541 12185670 -185009762 - B1_Mur1 SINE Alu -15 134 3 2 677 1257 304 88 35 chr1 12186291 12186802 -185008630 - MER21B LTR ERV1 -4 859 322 2 677 198 384 0 20 chr1 12188026 12188127 -185007305 - MIR SINE MIR -92 170 72 2 677 366 220 74 74 chr1 12188156 12188264 -185007168 + B4A SINE B4 44 151 -141 2 677 223 294 15 0 chr1 12188397 12188465 -185006967 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 677 1254 95 0 0 chr1 12188466 12188645 -185006787 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 677 833 164 0 6 chr1 12188647 12188786 -185006646 + CT-rich Low_complexity Low_complexity 21 159 0 2 677 1137 128 0 0 chr1 12188786 12188966 -185006466 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 677 833 164 0 6 chr1 12188966 12188986 -185006446 + polypyrimidine Low_complexity Low_complexity 1 20 0 2 677 189 0 0 0 chr1 12189073 12189094 -185006338 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 677 206 222 0 31 chr1 12189456 12189521 -185005911 + GA-rich Low_complexity Low_complexity 4 66 0 2 677 42 0 0 0 chr1 12189647 12189689 -185005743 + AT_rich Low_complexity Low_complexity 1 42 0 2 678 213 43 20 61 chr1 12189846 12189895 -185005537 + (CAAAAA)n Simple_repeat Simple_repeat 4 50 0 2 678 230 0 33 0 chr1 12190062 12190092 -185005340 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2 678 4495 225 47 4 chr1 12190094 12191082 -185004350 - Lx5 LINE L1 -16 7034 6005 2 678 2750 170 17 4 chr1 12191101 12191247 -185004185 + L1_Mur2 LINE L1 4888 5040 -837 2 678 3251 56 5 0 chr1 12191247 12191641 -185003791 - MTA_Mm LTR MaLR 0 396 1 2 678 2750 170 17 4 chr1 12191641 12192037 -185003395 + L1_Mur2 LINE L1 5041 5436 -441 2 678 5685 107 16 6 chr1 12192042 12193731 -185001701 + L1VL4 LINE L1 29 1736 -1823 2 678 5684 82 37 3 chr1 12194254 12195035 -185000397 - RLTR13C2 LTR ERVK 0 808 1 2 678 290 109 53 21 chr1 12195169 12195263 -185000169 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 2 678 1650 260 50 0 chr1 12195263 12195828 -184999604 + Lx6 LINE L1 6172 6770 -926 2 678 1055 302 66 46 chr1 12195812 12195877 -184999555 + Lx6 LINE L1 6967 7035 -425 2 678 1130 192 4 9 chr1 12195877 12196103 -184999329 - URR1A DNA MER1_type 0 226 2 2 678 1055 302 66 46 chr1 12196103 12196183 -184999249 + Lx6 LINE L1 7036 7114 -346 2 678 369 0 0 0 chr1 12196183 12196224 -184999208 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 678 1055 302 66 46 chr1 12196224 12196559 -184998873 + Lx6 LINE L1 7115 7458 -2 2 678 26 0 0 0 chr1 12196561 12196587 -184998845 + AT_rich Low_complexity Low_complexity 1 26 0 2 678 1684 112 4 4 chr1 12196643 12196913 -184998519 + Lx5 LINE L1 5674 5943 -1107 2 678 374 307 127 35 chr1 12197082 12197754 -184997678 - L1MA6 LINE L1 -6 6294 5544 2 678 29 0 0 0 chr1 12197754 12197783 -184997649 + AT_rich Low_complexity Low_complexity 1 29 0 2 678 22 0 0 0 chr1 12197918 12197940 -184997492 + AT_rich Low_complexity Low_complexity 1 22 0 2 678 349 224 34 22 chr1 12198317 12198495 -184996937 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 678 756 344 112 11 chr1 12198729 12199296 -184996136 + L1MDa LINE L1 180 886 -5747 3 678 558 291 90 21 chr1 12199397 12199731 -184995701 + L1MC3 LINE L1 5533 5889 -1896 3 678 1371 261 84 7 chr1 12199758 12200099 -184995333 + ORR1D2 LTR MaLR 1 405 -2 3 678 2108 90 6 6 chr1 12200125 12200449 -184994983 + L1Md_F2 LINE L1 5263 5586 -297 3 678 7751 58 6 3 chr1 12200450 12201430 -184994002 + L1Md_F2 LINE L1 5588 6570 -12 3 678 261 265 72 0 chr1 12201516 12201599 -184993833 + L1MC3 LINE L1 6035 6123 -1662 3 678 430 275 60 23 chr1 12201805 12202021 -184993411 + L1MDa LINE L1 4333 4556 -1981 3 678 1527 203 32 27 chr1 12202241 12203013 -184992419 + L1_Mur2 LINE L1 800 1595 -4282 3 678 2868 106 0 0 chr1 12203018 12203413 -184992019 + MTB LTR MaLR 6 400 0 3 678 2227 130 30 18 chr1 12203413 12203813 -184991619 + MTB-int LTR MaLR 1 405 -693 3 678 515 136 124 19 chr1 12203813 12203918 -184991514 + Lx LINE L1 4761 4876 -1007 3 678 6911 76 36 0 chr1 12203921 12205011 -184990421 - L1_Mus1 LINE L1 0 6567 5445 3 678 5323 145 3 2 chr1 12205010 12206169 -184989263 + Lx LINE L1 4860 6019 -635 3 678 5787 108 30 1 chr1 12206182 12207286 -184988146 + L1VL1 LINE L1 189 1321 -2377 3 678 35504 18 4 7 chr1 12207287 12212455 -184982977 + L1Md_A LINE L1 440 5586 -297 3 678 8299 39 1 0 chr1 12212455 12213448 -184981984 + L1Md_A LINE L1 5587 6580 -2 3 678 225 65 0 0 chr1 12213453 12213484 -184981948 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 678 270 0 0 0 chr1 12213547 12213577 -184981855 + (A)n Simple_repeat Simple_repeat 1 30 0 3 678 22684 119 92 5 chr1 12213577 12214428 -184981004 + L1_Mus2 LINE L1 1525 2379 -3504 3 678 2755 90 31 0 chr1 12214428 12214443 -184980989 + MTB LTR MaLR 1 15 -385 3 678 549 0 0 0 chr1 12214443 12214504 -184980928 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 678 2755 90 31 0 chr1 12214504 12214876 -184980556 + MTB LTR MaLR 16 398 -2 3 678 22684 115 81 6 chr1 12214876 12218684 -184976748 + L1_Mus2 LINE L1 2380 6564 -2 3 678 4269 110 8 2 chr1 12218704 12219325 -184976107 + Lx LINE L1 6024 6648 -6 3 678 738 288 84 63 chr1 12220075 12220360 -184975072 + B4A SINE B4 1 291 -1 3 678 911 129 7 0 chr1 12220583 12220738 -184974694 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 3 678 422 313 28 0 chr1 12222173 12222352 -184973080 - L1MA4A LINE L1 -368 5935 5752 3 678 1019 268 129 24 chr1 12222599 12222939 -184972493 + MTD LTR MaLR 18 393 -26 3 678 189 0 0 0 chr1 12222942 12222963 -184972469 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 678 2990 325 43 57 chr1 12223676 12225644 -184969788 - RodERV21-int LTR ERV1 -102 4889 2949 3 678 983 225 176 25 chr1 12226441 12226760 -184968672 - ORR1D2 LTR MaLR 0 370 4 3 678 625 280 100 33 chr1 12227071 12227239 -184968193 + RMER20B LTR ERVK 126 306 -321 3 678 239 0 0 31 chr1 12227239 12227271 -184968161 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 678 625 280 100 33 chr1 12227271 12227372 -184968060 + RMER20B LTR ERVK 307 413 -214 3 678 568 309 56 0 chr1 12227954 12228116 -184967316 - B3A SINE B2 -24 174 4 3 678 22 0 0 0 chr1 12228212 12228234 -184967198 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 561 120 55 83 chr1 12228251 12228360 -184967072 - B1_Mur2 SINE Alu -2 147 42 3 678 235 323 0 0 chr1 12228364 12228463 -184966969 + CT-rich Low_complexity Low_complexity 81 179 0 3 678 241 157 0 56 chr1 12228466 12228520 -184966912 - PB1D9 SINE Alu -61 59 9 3 678 438 20 0 0 chr1 12230114 12230165 -184965267 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 678 529 217 25 8 chr1 12230266 12230387 -184965045 + MTD LTR MaLR 8 130 -289 3 678 888 210 96 141 chr1 12230481 12230615 -184964817 + MTD LTR MaLR 81 209 -210 3 678 575 200 36 0 chr1 12230615 12230719 -184964713 + PB1D9 SINE Alu 5 112 -8 3 678 804 74 0 0 chr1 12230719 12230827 -184964605 + (GGA)n Simple_repeat Simple_repeat 2 109 0 3 678 888 210 96 141 chr1 12230832 12231052 -184964380 + MTD LTR MaLR 210 419 0 3 678 244 314 9 54 chr1 12231218 12231329 -184964103 + MIR SINE MIR 56 161 -101 3 678 270 115 0 0 chr1 12231460 12231512 -184963920 + (T)n Simple_repeat Simple_repeat 1 52 0 3 678 690 250 35 12 chr1 12231686 12231856 -184963576 - ID_B1 SINE B4 -1 223 50 3 678 24 0 0 0 chr1 12231856 12231880 -184963552 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 516 291 41 74 chr1 12233150 12233526 -184961906 + RCHARR1 DNA MER1_type 18 410 -564 3 678 657 317 76 32 chr1 12233539 12233790 -184961642 + B4A SINE B4 31 292 0 3 678 1324 264 60 11 chr1 12233884 12234336 -184961096 + RCHARR1 DNA MER1_type 497 970 -4 3 678 11235 180 121 16 chr1 12234468 12240063 -184955369 - Lx LINE L1 -3 6651 415 3 678 189 326 0 0 chr1 12240549 12240595 -184954837 - MIRb SINE MIR -14 254 209 3 678 278 333 9 0 chr1 12240675 12240780 -184954652 + PB1D10 SINE Alu 4 109 -8 3 678 2106 190 37 26 chr1 12242155 12242725 -184952707 - RMER6D LTR ERVK -4 716 1 3 678 1012 273 11 4 chr1 12243560 12243832 -184951600 - Lx6 LINE L1 -175 7285 7012 3 678 412 282 8 68 chr1 12244371 12244504 -184950928 - RSINE1 SINE B4 -38 127 3 3 678 5855 151 53 8 chr1 12244936 12245945 -184949487 - Lx2B LINE L1 -5 6995 5941 3 678 2105 274 64 111 chr1 12246514 12247366 -184948066 + Lx9 LINE L1 2689 3500 -2347 3 678 414 0 0 0 chr1 12247366 12247412 -184948020 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 678 441 0 0 0 chr1 12247412 12247460 -184947972 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 678 2105 274 64 111 chr1 12247460 12247902 -184947530 + Lx9 LINE L1 3501 3900 -1947 3 678 1099 103 0 0 chr1 12247902 12248048 -184947384 + B1_Mus1 SINE Alu 3 148 0 3 678 2105 274 64 111 chr1 12248048 12248227 -184947205 + Lx9 LINE L1 3901 4086 -1761 3 678 348 24 0 0 chr1 12248227 12248268 -184947164 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 678 2105 274 64 111 chr1 12248268 12248463 -184946969 + Lx9 LINE L1 4087 4279 -1568 3 678 3309 248 49 83 chr1 12248816 12250078 -184945354 + Lx9 LINE L1 4300 5531 -316 3 678 234 0 0 0 chr1 12250078 12250104 -184945328 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 678 941 48 81 0 chr1 12250105 12250229 -184945203 - B1_Mm SINE Alu -12 135 2 3 678 3309 248 49 83 chr1 12250229 12250549 -184944883 + Lx9 LINE L1 5532 5831 -16 3 678 459 0 0 0 chr1 12250568 12250619 -184944813 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 678 1747 301 35 12 chr1 12250633 12251224 -184944208 + Lx9 LINE L1 6358 6962 -682 3 678 890 172 14 0 chr1 12251676 12251821 -184943611 + B1_Mur4 SINE Alu 1 147 -3 3 678 863 210 128 0 chr1 12252335 12252530 -184942902 + URR1B DNA MER1_type 5 224 -1 3 678 301 233 0 0 chr1 12252530 12252590 -184942842 + URR1B DNA MER1_type 159 218 -7 3 678 429 209 9 50 chr1 12252599 12252713 -184942719 + RLTR16 LTR ERVK 32 145 -423 3 678 639 0 0 0 chr1 12252717 12252788 -184942644 + (TAAAAA)n Simple_repeat Simple_repeat 1 71 0 3 678 261 274 130 23 chr1 12252793 12252924 -184942508 + RLTR16 LTR ERVK 154 298 -207 3 678 1591 182 53 16 chr1 12253633 12253956 -184941476 + Lx6 LINE L1 6243 6577 -883 3 678 501 150 12 0 chr1 12253956 12254036 -184941396 - URR1B DNA MER1_type 0 225 145 3 678 34606 64 1 14 chr1 12254036 12260173 -184935259 - L1Md_F2 LINE L1 -11 6571 519 3 678 455 202 279 0 chr1 12260173 12260302 -184935130 - URR1B DNA MER1_type -56 169 5 3 678 3573 239 24 30 chr1 12260305 12261191 -184934241 + Lx6 LINE L1 6577 7456 -4 3 678 226 294 98 17 chr1 12261335 12261570 -184933862 - L1MEf LINE L1 -4129 2071 1818 3 678 372 302 167 10 chr1 12261793 12262081 -184933351 - L1MEf LINE L1 -4719 1481 1149 3 678 270 0 0 0 chr1 12262374 12262404 -184933028 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 678 1304 77 39 0 chr1 12262514 12262695 -184932737 - B2_Mm2 SINE B2 -6 189 2 3 678 25 65 0 0 chr1 12263926 12263972 -184931460 + AT_rich Low_complexity Low_complexity 1 46 0 3 678 2956 161 11 31 chr1 12264140 12264679 -184930753 - RLTR12B LTR ERVK 0 528 1 3 678 516 72 0 0 chr1 12265806 12265875 -184929557 + (GGGAGA)n Simple_repeat Simple_repeat 4 72 0 3 678 361 300 80 0 chr1 12267720 12267820 -184927612 + B1F2 SINE Alu 42 149 0 3 678 345 24 0 0 chr1 12270033 12270075 -184925357 + (GATTG)n Simple_repeat Simple_repeat 1 42 0 3 678 260 222 141 0 chr1 12270123 12270222 -184925210 - Lx9 LINE L1 -27 7617 7505 3 678 1023 246 25 11 chr1 12270226 12270505 -184924927 + Lx9 LINE L1 7133 7415 -229 3 678 195 204 0 0 chr1 12270695 12270739 -184924693 + G-rich Low_complexity Low_complexity 3 46 0 3 678 407 308 48 117 chr1 12272071 12272226 -184923206 + B3A SINE B2 3 157 -41 3 678 378 42 0 0 chr1 12272226 12272274 -184923158 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 678 237 308 48 117 chr1 12272274 12272324 -184923108 + B2_Mm2 SINE B2 155 194 -1 3 678 229 303 50 59 chr1 12272353 12272574 -184922858 + L1M4c LINE L1 1169 1387 -5022 3 678 492 352 70 48 chr1 12272589 12273046 -184922386 + L1M4c LINE L1 1316 1782 -4626 3 678 2745 65 0 0 chr1 12273430 12273782 -184921650 - L1Md_T LINE L1 -3 6579 6228 3 678 3006 68 2 8 chr1 12274105 12274503 -184920929 - MTA_Mm LTR MaLR 0 396 1 3 678 206 274 0 0 chr1 12274925 12274976 -184920456 + GA-rich Low_complexity Low_complexity 6 56 0 3 678 678 58 0 0 chr1 12274976 12275063 -184920369 + (GGAAA)n Simple_repeat Simple_repeat 4 90 0 3 678 387 282 267 0 chr1 12276849 12276980 -184918452 - B3A SINE B2 -31 167 2 3 678 200 359 0 11 chr1 12277169 12277262 -184918170 + (TATG)n Simple_repeat Simple_repeat 1 92 0 3 678 244 253 34 67 chr1 12277269 12277358 -184918074 - B4A SINE B4 -4 288 203 3 678 265 329 88 101 chr1 12277371 12277598 -184917834 + RLTR20D LTR ERVK 60 283 -285 3 678 551 325 24 44 chr1 12277966 12278172 -184917260 - B4A SINE B4 -88 204 3 3 678 7466 72 8 0 chr1 12279084 12280266 -184915166 + L1_Mus1 LINE L1 5345 6536 -31 3 678 3950 67 0 10 chr1 12280268 12280784 -184914648 + L1Md_F2 LINE L1 6061 6571 -11 3 678 271 325 67 42 chr1 12283324 12283443 -184911989 + B4A SINE B4 171 292 0 3 678 207 0 0 0 chr1 12285216 12285239 -184910193 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 678 1157 36 0 0 chr1 12285239 12285378 -184910054 - B1_Mus1 SINE Alu -9 139 1 3 678 15917 95 16 6 chr1 12286719 12288574 -184906858 + L1VL4 LINE L1 508 2378 -1536 3 678 2499 89 41 60 chr1 12288574 12288993 -184906439 - RLTR10A LTR ERVK 0 411 1 3 678 15917 114 26 13 chr1 12288993 12290448 -184904984 + L1VL4 LINE L1 2379 3872 -2271 3 678 2606 318 109 20 chr1 12290429 12292349 -184903083 - L1M2 LINE L1 -1525 4618 2528 3 678 2158 205 34 47 chr1 12292376 12292934 -184902498 + RLTR31_Mm LTR ERVK 11 561 0 3 678 27 0 0 0 chr1 12292946 12292973 -184902459 + AT_rich Low_complexity Low_complexity 1 27 0 3 678 7426 69 7 19 chr1 12293611 12294603 -184900829 - L1_Mus2 LINE L1 0 6566 5587 3 678 1464 124 0 4 chr1 12294605 12294831 -184900601 + L1_Mm LINE L1 4647 4871 -1012 3 678 354 45 0 0 chr1 12294831 12294875 -184900557 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 3 678 1140 50 0 0 chr1 12294884 12295023 -184900409 + L1_Mus2 LINE L1 6180 6318 -248 3 678 3065 116 0 8 chr1 12295016 12295485 -184899947 + L1_Mm LINE L1 4857 5321 -562 3 678 511 281 65 0 chr1 12296058 12296197 -184899235 - RMER15 LTR ERVL -22 553 406 3 678 21 0 0 0 chr1 12296688 12296709 -184898723 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 289 341 12 0 chr1 12297143 12297225 -184898207 + RCHARR1 DNA MER1_type 4 86 -888 3 678 2079 302 80 32 chr1 12297233 12298108 -184897324 - Lx8 LINE L1 -228 7245 6329 3 678 208 170 38 0 chr1 12298129 12298182 -184897250 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 678 34 24 0 0 chr1 12298543 12298584 -184896848 + AT_rich Low_complexity Low_complexity 1 41 0 4 678 234 0 0 0 chr1 12298640 12298666 -184896766 + (A)n Simple_repeat Simple_repeat 1 26 0 4 678 602 301 86 47 chr1 12298701 12298980 -184896452 - Lx7 LINE L1 -384 7312 7023 4 678 1003 135 12 6 chr1 12298984 12299155 -184896277 - RMER17D2 LTR ERVK 0 809 638 4 678 33 43 0 0 chr1 12299416 12299463 -184895969 + AT_rich Low_complexity Low_complexity 1 47 0 4 678 1052 292 79 16 chr1 12299641 12299958 -184895474 + ORR1E LTR MaLR 15 351 -8 4 678 25 0 0 0 chr1 12300194 12300219 -184895213 + AT_rich Low_complexity Low_complexity 1 25 0 4 678 2126 312 74 32 chr1 12300333 12301007 -184894425 + Lx8 LINE L1 6482 7152 -321 4 678 510 17 0 0 chr1 12301007 12301066 -184894366 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 678 2126 312 74 32 chr1 12301066 12301341 -184894091 + Lx8 LINE L1 7153 7470 -3 4 678 607 309 5 10 chr1 12301998 12302201 -184893231 - Lx9 LINE L1 -189 7455 7254 4 678 483 314 17 0 chr1 12302237 12302409 -184893023 - Lx8 LINE L1 -419 7054 6880 4 678 245 198 36 36 chr1 12302433 12302517 -184892915 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 4 678 252 59 0 0 chr1 12302518 12302552 -184892880 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 678 1086 14 21 0 chr1 12302572 12302712 -184892720 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 4 678 2659 118 8 8 chr1 12302712 12303114 -184892318 - RLTR9D LTR ERVK -1 402 1 4 678 663 104 47 23 chr1 12303114 12303381 -184892051 + (TAGA)n Simple_repeat Simple_repeat 1 273 0 4 678 291 174 78 30 chr1 12303403 12303569 -184891863 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 4 678 1484 168 79 0 chr1 12303835 12304115 -184891317 - IAPEY3_LTR LTR ERVK -17 315 14 4 678 468 296 117 78 chr1 12304285 12304670 -184890762 + MLT1C LTR MaLR 4 403 -64 4 678 23 33 0 0 chr1 12304836 12304866 -184890566 + AT_rich Low_complexity Low_complexity 1 30 0 4 678 387 0 0 0 chr1 12305161 12305204 -184890228 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 4 678 468 0 0 0 chr1 12305823 12305875 -184889557 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 678 752 320 61 4 chr1 12305923 12306168 -184889264 - B4A SINE B4 -26 266 8 4 678 189 213 0 0 chr1 12306209 12306256 -184889176 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 678 470 265 120 42 chr1 12306258 12306400 -184889032 - RSINE1 SINE B4 0 165 13 4 678 1157 227 115 113 chr1 12306401 12306475 -184888957 + MTD LTR MaLR 2 80 -339 4 678 959 141 0 7 chr1 12306475 12306613 -184888819 + B1_Mus1 SINE Alu 2 139 -9 4 678 686 62 10 0 chr1 12306613 12306709 -184888723 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 678 1157 227 115 113 chr1 12306709 12307055 -184888377 + MTD LTR MaLR 81 419 0 4 678 226 308 81 62 chr1 12307331 12307542 -184887890 - L1MD2 LINE L1 -85 6274 6060 4 678 803 315 65 11 chr1 12307537 12308015 -184887417 - L1MDa LINE L1 -3440 3097 2594 4 678 393 332 141 10 chr1 12308346 12308757 -184886675 - L1MDa LINE L1 -4560 2073 1609 4 678 317 321 139 33 chr1 12308932 12309206 -184886226 + L2a LINE L2 2582 2884 -535 4 678 364 372 103 37 chr1 12309320 12309700 -184885732 + L2a LINE L2 3017 3421 -5 4 678 623 240 94 231 chr1 12310768 12311206 -184884226 + ORR1D1 LTR MaLR 1 378 0 4 678 13476 106 249 23 chr1 12311327 12313726 -184881706 + L1VL1 LINE L1 218 3240 -2643 4 678 553 105 0 0 chr1 12313726 12313802 -184881630 + RMER17A LTR ERVK 1 76 -675 4 678 13476 106 249 23 chr1 12313802 12315323 -184880109 + L1VL1 LINE L1 3241 5159 -724 4 678 1833 83 0 0 chr1 12315323 12315565 -184879867 + L1_Mus1 LINE L1 6326 6567 0 4 678 244 270 0 26 chr1 12316624 12316700 -184878732 + (CATA)n Simple_repeat Simple_repeat 2 75 0 4 678 280 289 66 96 chr1 12316916 12317294 -184878138 + Lx8 LINE L1 1261 1634 -4246 4 678 916 226 33 9 chr1 12317294 12317504 -184877928 + B3 SINE B2 1 215 -1 4 678 280 289 66 96 chr1 12317504 12317688 -184877744 + Lx8 LINE L1 1635 1806 -4074 4 678 3972 291 88 22 chr1 12317689 12319829 -184875603 + Lx8 LINE L1 2209 4490 -1390 4 678 1553 162 45 82 chr1 12319823 12320200 -184875232 + Lx6 LINE L1 5654 6016 -1034 4 84 2801 251 104 15 chr1 12320207 12321123 -184874309 + Lx6 LINE L1 6168 7399 -61 4 679 633 264 205 2 chr1 12321149 12321553 -184873879 + Lx8 LINE L1 5476 5927 -1717 4 679 3552 13 0 0 chr1 12321574 12321970 -184873462 + MTA_Mm LTR MaLR 1 396 0 4 679 9637 16 1 0 chr1 12321970 12323067 -184872365 + MTA_Mm-int LTR MaLR 1 1098 0 4 679 3552 13 0 0 chr1 12323067 12323463 -184871969 + MTA_Mm LTR MaLR 1 396 0 4 679 1693 296 54 22 chr1 12323737 12324327 -184871105 + Lx8 LINE L1 6332 6940 -533 4 679 296 330 165 31 chr1 12324371 12324693 -184870739 + Lx8 LINE L1 7090 7454 -19 4 679 314 333 100 8 chr1 12326484 12326614 -184868818 - B1F1 SINE Alu -7 142 1 4 679 2874 155 81 17 chr1 12326661 12327191 -184868241 + RLTR12A LTR ERVK 1 564 -4 4 679 1831 156 126 3 chr1 12327292 12327634 -184867798 + ORR1C2 LTR MaLR 1 384 0 4 679 403 18 36 0 chr1 12327669 12327725 -184867707 + (TTG)n Simple_repeat Simple_repeat 2 59 0 4 679 299 261 101 0 chr1 12329086 12329155 -184866277 + MTE2b LTR MaLR 1 76 -303 4 679 240 257 0 0 chr1 12329156 12329226 -184866206 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 679 276 296 59 47 chr1 12329289 12329374 -184866058 + PB1D9 SINE Alu 29 114 -6 4 679 25 0 0 0 chr1 12330745 12330770 -184864662 + AT_rich Low_complexity Low_complexity 1 25 0 4 679 243 0 0 0 chr1 12330941 12330968 -184864464 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 679 31 58 0 0 chr1 12330996 12331048 -184864384 + AT_rich Low_complexity Low_complexity 1 52 0 4 679 21 57 0 0 chr1 12331083 12331118 -184864314 + AT_rich Low_complexity Low_complexity 1 35 0 4 679 239 273 52 0 chr1 12332173 12332250 -184863182 - ID4 SINE ID -1 82 2 4 679 206 118 0 0 chr1 12333034 12333068 -184862364 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 679 3701 116 23 7 chr1 12333155 12333710 -184861722 - LTRIS2 LTR ERV1 0 564 1 4 679 950 69 0 8 chr1 12334137 12334269 -184861163 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 4 679 3943 67 2 25 chr1 12334659 12335183 -184860249 - RLTR1B LTR ERV1 0 512 1 4 679 636 271 0 8 chr1 12336031 12336161 -184859271 + RSINE1 SINE B4 2 130 -35 4 679 411 285 25 68 chr1 12337863 12337911 -184857521 - B4A SINE B4 -35 257 215 4 679 339 65 0 0 chr1 12337911 12337957 -184857475 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 679 607 144 72 0 chr1 12337959 12338070 -184857362 - B1_Mur4 SINE Alu -13 137 19 4 679 264 291 0 140 chr1 12338002 12338138 -184857294 - MT2B LTR ERVL -361 240 124 4 679 212 322 50 68 chr1 12338189 12338409 -184857023 + L2 LINE L2 2817 3032 -387 4 679 1366 217 188 0 chr1 12338862 12339208 -184856224 - MTD LTR MaLR -8 411 1 4 679 631 294 74 20 chr1 12339227 12339525 -184855907 - Charlie5 DNA MER1_type -77 2547 2234 4 679 22 35 0 0 chr1 12339530 12339559 -184855873 + AT_rich Low_complexity Low_complexity 1 29 0 4 679 377 273 73 0 chr1 12339572 12339682 -184855750 + PB1D7 SINE Alu 1 118 -2 4 679 180 111 0 0 chr1 12339947 12339974 -184855458 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 4 679 6729 91 29 12 chr1 12339998 12340992 -184854440 - L1_Mus3 LINE L1 -7 6631 5609 4 679 6191 77 162 1 chr1 12340992 12341882 -184853550 + RLTR13D4 LTR ERVK 1 1033 0 4 679 6729 91 5 18 chr1 12341882 12342189 -184853243 - L1_Mus3 LINE L1 -275 5608 5311 4 679 513 314 79 33 chr1 12344077 12344454 -184850978 + MLT1C LTR MaLR 1 422 -45 4 679 2383 84 141 3 chr1 12344454 12344824 -184850608 - RMER16 LTR ERVK 0 533 113 4 679 566 370 63 40 chr1 12344855 12345204 -184850228 + ORR1E LTR MaLR 2 358 -1 4 679 314 309 0 0 chr1 12345567 12345648 -184849784 + GA-rich Low_complexity Low_complexity 2 82 0 4 679 741 232 0 27 chr1 12345861 12346007 -184849425 + B1_Mur1 SINE Alu 8 149 0 4 679 8204 18 1 0 chr1 12347054 12348423 -184847009 - L1Md_A LINE L1 0 6582 5213 4 679 264 326 0 89 chr1 12348514 12348615 -184846817 - BC1_Mm scRNA scRNA -51 101 10 4 679 3055 34 47 5 chr1 12348719 12349099 -184846333 + MTA_Mm LTR MaLR 1 396 0 4 679 677 36 3 0 chr1 12350216 12350315 -184845117 + L1Md_F2 LINE L1 6146 6247 -335 4 679 27088 119 24 40 chr1 12350342 12355914 -184839518 + L1_Mus2 LINE L1 576 6074 -492 4 679 1117 82 0 0 chr1 12355914 12356061 -184839371 + B1_Mus2 SINE Alu 1 147 0 4 679 1275 89 0 0 chr1 12356067 12356246 -184839186 + (GAAAA)n Simple_repeat Simple_repeat 1 179 0 4 679 6391 81 22 29 chr1 12356246 12356747 -184838685 + L1_Mus2 LINE L1 6075 6566 0 4 679 27 0 0 0 chr1 12356814 12356841 -184838591 + AT_rich Low_complexity Low_complexity 1 27 0 4 679 1046 209 29 19 chr1 12357116 12357321 -184838111 + B3 SINE B2 5 211 -5 4 679 249 146 0 0 chr1 12358232 12358280 -184837152 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 679 184 222 0 0 chr1 12358468 12358504 -184836928 + MIR SINE MIR 116 151 -111 4 679 237 132 0 0 chr1 12358628 12358666 -184836766 + (GGAGAA)n Simple_repeat Simple_repeat 5 42 0 4 679 428 284 36 36 chr1 12358841 12358980 -184836452 - B1_Mur1 SINE Alu 0 149 11 4 679 235 293 101 59 chr1 12359267 12359655 -184835777 - L1M3 LINE L1 -1592 4548 4145 4 679 27 0 0 0 chr1 12359655 12359682 -184835750 + AT_rich Low_complexity Low_complexity 1 27 0 4 679 1126 68 7 0 chr1 12359682 12359828 -184835604 + B1_Mm SINE Alu 1 147 0 4 679 734 250 179 0 chr1 12359839 12360091 -184835341 - Lx6 LINE L1 -27 7433 7137 4 679 923 144 128 14 chr1 12360128 12360339 -184835093 - Lx6 LINE L1 -514 6946 6712 4 679 358 230 148 47 chr1 12360339 12360467 -184834965 - RMER12 LTR ERVK 0 1322 1182 4 679 232 315 27 0 chr1 12360510 12360583 -184834849 - RMER12 LTR ERVK -158 1414 1340 4 679 1206 41 0 7 chr1 12360602 12360750 -184834682 - B1_Mm SINE Alu 0 147 1 4 679 2912 216 68 128 chr1 12360750 12361772 -184833660 - RMER12 LTR ERVK -219 1353 1 4 679 3254 254 52 6 chr1 12361772 12362678 -184832754 - Lx7 LINE L1 -968 6728 5785 4 679 207 0 0 0 chr1 12362681 12362704 -184832728 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 679 2302 209 81 15 chr1 12362704 12363224 -184832208 - Lx5 LINE L1 -20 7030 6477 4 679 6674 176 58 21 chr1 12363512 12365016 -184830416 - Lx7 LINE L1 -83 5797 4237 4 679 923 28 0 0 chr1 12365016 12365123 -184830309 + U6 snRNA snRNA 1 107 0 4 679 30785 70 0 1 chr1 12365123 12369413 -184826019 + L1Md_F2 LINE L1 1298 5586 -297 4 679 8114 46 3 0 chr1 12369413 12370406 -184825026 + L1Md_F2 LINE L1 5587 6582 0 4 679 2600 182 16 9 chr1 12370406 12370965 -184824467 - Lx7 LINE L1 -1634 4246 3684 4 679 728 252 20 122 chr1 12370965 12371218 -184824214 + MT2B LTR ERVL 53 279 -322 4 679 1638 258 15 28 chr1 12371068 12371535 -184823897 + ORR1B1-int LTR MaLR 624 1084 -425 5 679 3920 166 161 81 chr1 12371535 12372487 -184822945 + RLTR25B LTR ERVK 1 1028 0 5 679 1513 146 272 22 chr1 12372487 12372831 -184822601 + ORR1B1-int LTR MaLR 1075 1509 0 5 679 1802 200 50 21 chr1 12372831 12373214 -184822218 + ORR1B1 LTR MaLR 1 394 0 5 679 1095 102 54 0 chr1 12373218 12373404 -184822028 - L1_Mur3 LINE L1 -2196 3684 3489 5 679 3879 235 46 53 chr1 12373405 12375315 -184820117 + Lx5 LINE L1 5060 6938 -112 5 679 280 249 71 55 chr1 12375307 12375490 -184819942 + Lx7 LINE L1 7511 7696 0 5 679 8023 156 40 21 chr1 12375490 12377223 -184818209 - L1_Mur3 LINE L1 -2423 3457 1693 5 679 513 0 0 0 chr1 12377223 12377280 -184818152 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 679 231 167 0 0 chr1 12377301 12377343 -184818089 - L1_Mur3 LINE L1 -7626 102 61 5 679 367 333 45 21 chr1 12377389 12377680 -184817752 - L1M3 LINE L1 -2144 3996 3699 5 679 31 58 0 0 chr1 12377680 12377732 -184817700 + AT_rich Low_complexity Low_complexity 1 52 0 5 679 262 385 0 25 chr1 12377799 12377879 -184817553 - RSINE1 SINE B4 0 165 88 5 679 569 190 16 41 chr1 12377951 12378072 -184817360 - ID_B1 SINE B4 0 224 107 5 679 332 77 19 0 chr1 12378222 12378274 -184817158 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 5 679 490 267 67 38 chr1 12378309 12378652 -184816780 - L1M3 LINE L1 -2987 3153 2801 5 679 570 67 0 0 chr1 12379098 12379173 -184816259 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 5 679 194 0 39 0 chr1 12379175 12379201 -184816231 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 679 2392 170 114 12 chr1 12379710 12380299 -184815133 + Lx9 LINE L1 6994 7642 -2 5 679 296 291 0 28 chr1 12381049 12381155 -184814277 + GA-rich Low_complexity Low_complexity 4 106 0 5 679 303 287 273 23 chr1 12382256 12382388 -184813044 + RSINE1 SINE B4 1 165 0 5 679 259 187 290 8 chr1 12383007 12383131 -184812301 - L1ME3A LINE L1 -56 6117 5959 5 679 637 234 7 47 chr1 12383223 12383371 -184812061 - B1_Mur1 SINE Alu -7 142 1 5 679 293 277 31 0 chr1 12383787 12383852 -184811580 + B1F2 SINE Alu 3 69 -80 5 679 354 352 19 0 chr1 12383843 12383951 -184811481 + B4A SINE B4 175 284 -8 5 679 190 306 120 20 chr1 12384203 12384303 -184811129 - L3 LINE CR1 -74 4415 4306 5 679 647 262 21 0 chr1 12384340 12384476 -184810956 + B3A SINE B2 4 142 -56 5 679 261 239 0 53 chr1 12384476 12384551 -184810881 + RLTR31_Mur LTR ERVK 1 71 -482 5 679 3919 91 23 13 chr1 12384589 12384630 -184810802 - L1_Mus4 LINE L1 -8 6628 6594 5 679 7015 55 20 16 chr1 12384630 12385519 -184809913 - RLTR13B1 LTR ERVK 0 893 1 5 679 3919 91 23 13 chr1 12385519 12386032 -184809400 - L1_Mus4 LINE L1 -43 6593 6068 5 679 2268 152 5 0 chr1 12386032 12386448 -184808984 - L1Md_T LINE L1 -681 5901 5481 5 679 4165 142 3 40 chr1 12386451 12387233 -184808199 + L1Md_T LINE L1 4700 5452 -431 5 679 239 283 10 80 chr1 12387315 12387415 -184808017 + RLTR17 LTR ERVK 464 556 -136 5 679 21 82 0 0 chr1 12387546 12387595 -184807837 + AT_rich Low_complexity Low_complexity 1 49 0 5 679 28 29 0 0 chr1 12387631 12387666 -184807766 + AT_rich Low_complexity Low_complexity 1 35 0 5 679 288 53 0 0 chr1 12387710 12387748 -184807684 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 679 32 67 0 0 chr1 12389336 12389396 -184806036 + AT_rich Low_complexity Low_complexity 1 60 0 5 679 285 316 33 41 chr1 12390407 12390529 -184804903 + B4 SINE B4 20 140 -152 5 679 188 111 0 27 chr1 12390667 12390704 -184804728 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 679 953 281 100 45 chr1 12390938 12391429 -184804003 - Lx8 LINE L1 0 7473 6956 5 679 833 262 29 113 chr1 12392510 12392924 -184802508 - MTE2a LTR MaLR 0 379 1 5 679 243 188 0 0 chr1 12393819 12393867 -184801565 + A-rich Low_complexity Low_complexity 1 48 0 5 679 604 307 30 4 chr1 12394996 12395264 -184800168 - L1MC4a LINE L1 -9 7873 7599 5 679 258 290 63 21 chr1 12398044 12398139 -184797293 + MLT1A0 LTR MaLR 43 141 -224 5 679 23 0 0 0 chr1 12398258 12398281 -184797151 + AT_rich Low_complexity Low_complexity 1 23 0 5 679 1099 86 25 6 chr1 12398453 12398616 -184796816 + B2_Mm2 SINE B2 2 167 -28 5 679 1648 172 111 29 chr1 12399081 12399495 -184795937 + Lx9 LINE L1 6689 7136 -508 5 679 200 35 35 0 chr1 12399875 12399904 -184795528 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 679 757 176 23 0 chr1 12399904 12400035 -184795397 - B1_Mus1 SINE Alu -10 138 5 5 679 1540 55 0 31 chr1 12401015 12401238 -184794194 + L1Md_F2 LINE L1 6366 6581 -1 5 679 630 270 22 27 chr1 12401944 12402127 -184793305 + B3A SINE B2 1 182 -16 5 679 322 245 13 0 chr1 12402136 12402287 -184793145 + (CA)n Simple_repeat Simple_repeat 2 154 0 5 679 26 50 0 0 chr1 12403558 12403598 -184791834 + AT_rich Low_complexity Low_complexity 1 40 0 5 679 1643 136 157 6 chr1 12404724 12405036 -184790396 + RLTR15 LTR ERVK 1 359 0 5 679 23 54 0 0 chr1 12405510 12405547 -184789885 + AT_rich Low_complexity Low_complexity 1 37 0 5 679 500 271 34 0 chr1 12405873 12405991 -184789441 + RSINE1 SINE B4 12 133 -32 5 679 221 240 20 0 chr1 12406021 12406071 -184789361 + GA-rich Low_complexity Low_complexity 1 51 0 5 679 231 103 0 0 chr1 12407094 12407133 -184788299 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 679 614 58 39 0 chr1 12407433 12407537 -184787895 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 5 679 22 0 0 0 chr1 12408246 12408268 -184787164 + AT_rich Low_complexity Low_complexity 1 22 0 5 679 181 208 18 36 chr1 12410019 12410074 -184785358 + MIR SINE MIR 123 176 -86 5 679 234 0 0 0 chr1 12410331 12410357 -184785075 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 5 679 395 263 0 0 chr1 12410375 12410451 -184784981 - RSINE1 SINE B4 -26 139 64 5 679 3417 66 32 1 chr1 12410479 12410991 -184784441 - Lx3_Mus LINE L1 -1090 5919 5400 5 679 34 55 0 0 chr1 12411215 12411270 -184784162 + AT_rich Low_complexity Low_complexity 1 55 0 5 679 1106 66 18 0 chr1 12411812 12411978 -184783454 - MusHAL1 LINE L1 -632 2080 1912 5 679 6154 91 14 18 chr1 12411971 12412322 -184783110 - L1VL2 LINE L1 -5316 1019 675 5 679 954 206 155 37 chr1 12412322 12412619 -184782813 + IAPEY3_LTR LTR ERVK 1 332 0 5 679 6154 91 14 18 chr1 12412619 12413197 -184782235 - L1VL2 LINE L1 -5661 674 94 5 679 654 279 39 15 chr1 12413748 12413952 -184781480 + B3 SINE B2 1 209 -7 5 679 581 358 139 76 chr1 12415227 12415808 -184779624 + MLT1E2 LTR MaLR 10 627 0 5 679 358 285 81 44 chr1 12417110 12417153 -184778279 - Tigger7 DNA MER2_type -4 2487 2443 5 679 2216 165 18 3 chr1 12417153 12417541 -184777891 - ORR1B1 LTR MaLR 0 394 1 5 679 358 285 81 44 chr1 12417541 12417633 -184777799 - Tigger7 DNA MER2_type -49 2442 2347 5 679 1214 296 144 47 chr1 12417634 12418247 -184777185 - Tigger7 DNA MER2_type -1818 673 2 5 679 474 266 26 21 chr1 12418770 12418913 -184776519 + MTEb LTR MaLR 251 419 0 5 679 1620 198 88 9 chr1 12419223 12419565 -184775867 + MTC LTR MaLR 1 369 -52 5 679 460 317 0 8 chr1 12419800 12419924 -184775508 + RSINE1 SINE B4 5 127 -38 5 679 1175 97 0 6 chr1 12419996 12420173 -184775259 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 5 679 540 30 0 0 chr1 12420707 12420773 -184774659 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 5 679 567 332 15 5 chr1 12420799 12420999 -184774433 + MLT1A0 LTR MaLR 164 365 0 5 679 243 176 58 12 chr1 12421348 12421434 -184773998 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 679 230 412 0 0 chr1 12421760 12421862 -184773570 - LTR33 LTR ERVL -411 104 3 5 679 378 0 0 0 chr1 12421949 12421991 -184773441 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 679 547 257 107 197 chr1 12422413 12422825 -184772607 + MTEb LTR MaLR 1 375 -4 5 679 295 202 18 0 chr1 12423172 12423281 -184772151 + GA-rich Low_complexity Low_complexity 1 111 0 5 679 245 288 82 0 chr1 12423957 12424030 -184771402 + MTE2b LTR MaLR 108 186 -193 5 679 233 298 8 80 chr1 12424062 12424174 -184771258 + B1F SINE Alu 11 144 -5 5 679 283 226 0 31 chr1 12424840 12424904 -184770528 + MTE2b LTR MaLR 278 339 -40 5 679 816 111 0 0 chr1 12425000 12425135 -184770297 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 5 679 249 33 0 0 chr1 12425176 12425206 -184770226 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 679 480 18 0 0 chr1 12425206 12425263 -184770169 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 679 226 346 9 46 chr1 12425264 12425373 -184770059 - B4 SINE B4 -26 266 162 5 679 248 273 0 0 chr1 12426952 12427007 -184768425 + GA-rich Low_complexity Low_complexity 2 56 0 5 679 497 139 8 0 chr1 12427214 12427336 -184768096 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 5 679 1938 63 0 12 chr1 12427465 12427721 -184767711 - L1_Mus2 LINE L1 0 6566 6314 5 679 201 182 0 22 chr1 12427935 12427980 -184767452 + (CTTTG)n Simple_repeat Simple_repeat 3 46 0 5 679 4209 227 57 31 chr1 12428330 12429426 -184766006 - Lx5 LINE L1 -1 7049 5926 5 679 2432 196 34 19 chr1 12429421 12429806 -184765626 + L1_Mur2 LINE L1 4862 5243 -634 5 679 270 0 0 0 chr1 12429806 12429836 -184765596 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 679 2432 196 34 19 chr1 12429836 12430018 -184765414 + L1_Mur2 LINE L1 5244 5436 -441 5 679 29852 110 16 29 chr1 12430038 12435532 -184759900 + L1Md_F2 LINE L1 31 5552 -331 5 679 7260 88 4 1 chr1 12435532 12436522 -184758910 + L1Md_F2 LINE L1 5587 6579 -3 5 679 29852 174 89 26 chr1 12436522 12437543 -184757889 + L1Md_F2 LINE L1 5553 6563 -19 5 679 205 243 0 28 chr1 12437570 12437642 -184757790 + A-rich Low_complexity Low_complexity 1 70 0 5 679 501 269 72 9 chr1 12438258 12438479 -184756953 - L1M4 LINE L1 -746 5400 5166 5 679 603 339 63 60 chr1 12439326 12439643 -184755789 + ORR1E LTR MaLR 33 350 -9 5 679 394 295 41 23 chr1 12439745 12439936 -184755496 + B3A SINE B2 1 194 -1 5 679 416 130 51 13 chr1 12440228 12440306 -184755126 - MTD LTR MaLR -338 81 1 5 679 826 233 22 0 chr1 12440438 12440618 -184754814 - B3 SINE B2 -6 210 27 5 679 1181 178 62 43 chr1 12440770 12441095 -184754337 - ORR1C2 LTR MaLR 0 384 1 5 679 226 129 32 0 chr1 12441158 12441220 -184754212 + A-rich Low_complexity Low_complexity 2 65 0 6 679 326 335 110 52 chr1 12441231 12441729 -184753703 + L1M5 LINE L1 4866 5392 -754 6 679 404 360 15 7 chr1 12441836 12442005 -184753427 + L1M5 LINE L1 5431 5600 -564 6 679 6232 86 8 3 chr1 12442005 12442864 -184752568 + L1Md_F2 LINE L1 5719 6581 -1 6 679 404 360 15 7 chr1 12442864 12442968 -184752464 + L1M5 LINE L1 5601 5706 -458 6 679 255 273 68 24 chr1 12443144 12443270 -184752162 + MLT1E1A LTR MaLR 310 467 -187 6 679 296 270 240 0 chr1 12443299 12443399 -184752033 + MLT1E1A LTR MaLR 557 680 0 6 679 341 262 0 12 chr1 12443556 12443637 -184751795 + ID4_ SINE ID 3 82 -1 6 679 21 57 0 0 chr1 12443773 12443808 -184751624 + AT_rich Low_complexity Low_complexity 1 35 0 6 679 249 88 70 0 chr1 12443861 12443918 -184751514 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 679 620 302 72 61 chr1 12444008 12444368 -184751064 - MLT1A1 LTR MaLR 0 408 45 6 679 615 157 0 0 chr1 12444485 12444593 -184750839 + GA-rich Low_complexity Low_complexity 3 110 0 6 679 5725 147 53 6 chr1 12444639 12445732 -184749700 - Lx LINE L1 -3 6651 5528 6 679 324 176 0 0 chr1 12447689 12447757 -184747675 + CT-rich Low_complexity Low_complexity 2 69 0 6 84 29776 94 11 12 chr1 12447774 12453014 -184742418 + L1Md_F2 LINE L1 352 5586 -297 6 680 7530 51 27 4 chr1 12453014 12453974 -184741458 + L1Md_F2 LINE L1 5587 6568 -14 6 680 207 0 0 0 chr1 12453989 12454012 -184741420 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 680 2981 133 140 4 chr1 12454034 12454592 -184740840 + L1_Mus2 LINE L1 5925 6558 -8 6 680 398 221 92 7 chr1 12455095 12455236 -184740196 - Lx6 LINE L1 -12 7448 7296 6 680 665 230 28 17 chr1 12455234 12455411 -184740021 + Lx6 LINE L1 7106 7284 -176 6 680 37 23 0 0 chr1 12455840 12455884 -184739548 + AT_rich Low_complexity Low_complexity 1 44 0 6 680 428 291 55 28 chr1 12456175 12456320 -184739112 + ID_B1 SINE B4 23 171 -53 6 680 5185 94 1 9 chr1 12457292 12458030 -184737402 - L1Md_F2 LINE L1 0 6582 5851 6 680 12463 77 6 1 chr1 12458030 12459086 -184736346 - L1Md_F LINE L1 -2850 3033 1978 6 680 303 0 64 0 chr1 12459086 12459133 -184736299 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 6 680 12463 94 20 0 chr1 12459133 12460598 -184734834 - L1Md_F LINE L1 -3906 1977 476 6 680 238 209 0 0 chr1 12460596 12460639 -184734793 - L1VL1 LINE L1 -6156 266 224 6 680 25 31 0 0 chr1 12461200 12461232 -184734200 + AT_rich Low_complexity Low_complexity 1 32 0 6 680 229 266 98 78 chr1 12461285 12461387 -184734045 - ORR1E LTR MaLR 0 359 256 6 680 542 263 114 35 chr1 12462312 12462543 -184732889 + ORR1C1 LTR MaLR 5 271 -103 6 680 427 171 0 19 chr1 12462544 12462651 -184732781 + (CCTG)n Simple_repeat Simple_repeat 3 107 0 6 680 754 233 13 67 chr1 12462651 12462736 -184732696 + ORR1C2 LTR MaLR 172 248 -136 6 680 973 83 0 48 chr1 12462736 12462925 -184732507 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 6 680 754 233 13 67 chr1 12462925 12463064 -184732368 + ORR1C2 LTR MaLR 249 384 0 6 680 280 97 32 0 chr1 12463088 12463150 -184732282 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 680 396 0 0 0 chr1 12463443 12463487 -184731945 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 680 288 0 0 0 chr1 12463487 12463518 -184731914 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 680 775 295 55 0 chr1 12463675 12463946 -184731486 - B4 SINE B4 -6 286 1 6 680 5454 126 9 1 chr1 12464198 12465011 -184730421 + Lx3C LINE L1 6155 6973 -3 6 680 582 252 7 13 chr1 12465210 12465359 -184730073 + B1_Mur1 SINE Alu 2 149 0 6 680 554 268 43 21 chr1 12465397 12465538 -184729894 + RSINE1 SINE B4 20 163 -2 6 680 210 37 0 0 chr1 12466209 12466236 -184729196 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 680 809 92 23 23 chr1 12466237 12466414 -184729018 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 6 680 198 0 0 0 chr1 12467163 12467185 -184728247 + (A)n Simple_repeat Simple_repeat 1 22 0 6 680 231 210 86 0 chr1 12467226 12467307 -184728125 + L1MEg LINE L1 2077 2164 -4078 6 680 339 311 190 29 chr1 12467684 12467995 -184727437 + L1MEg LINE L1 2865 3225 -2921 6 680 520 263 127 105 chr1 12468226 12468488 -184726944 + B4A SINE B4 1 270 -22 6 680 787 89 15 0 chr1 12468488 12468623 -184726809 + (CA)n Simple_repeat Simple_repeat 1 137 0 6 680 520 263 127 105 chr1 12468623 12468636 -184726796 + B4A SINE B4 271 282 -10 6 680 572 207 35 0 chr1 12468671 12468787 -184726645 + B3 SINE B2 8 127 -89 6 680 208 352 96 105 chr1 12469632 12469851 -184725581 + L2c LINE L2 3158 3386 -1 6 680 372 185 28 0 chr1 12469928 12470036 -184725396 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 680 225 238 238 0 chr1 12470328 12470479 -184724953 - Charlie5 DNA MER1_type -14 2610 2424 6 680 6396 96 6 29 chr1 12470483 12471162 -184724270 - L1_Mus2 LINE L1 -8 6558 5900 6 680 3140 74 2 0 chr1 12471162 12471556 -184723876 - MTA_Mm LTR MaLR -1 395 1 6 680 8261 64 12 2 chr1 12471556 12472643 -184722789 - MTA_Mm-int LTR MaLR 0 1098 1 6 680 3142 73 0 2 chr1 12472643 12473040 -184722392 - MTA_Mm LTR MaLR 0 396 1 6 680 9943 118 26 15 chr1 12473040 12474740 -184720692 - L1_Mus2 LINE L1 -667 5899 4169 6 680 18035 107 13 27 chr1 12474740 12477065 -184718367 + L1_Mus1 LINE L1 2946 5227 -656 6 680 300 70 0 0 chr1 12477065 12477108 -184718324 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 680 18035 77 14 14 chr1 12477108 12478441 -184716991 + L1_Mus1 LINE L1 5228 6566 -1 6 680 181 211 0 95 chr1 12479258 12479321 -184716111 + MIR SINE MIR 90 146 -62 6 680 360 0 0 0 chr1 12479756 12479796 -184715636 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 680 180 163 0 0 chr1 12479916 12479959 -184715473 + G-rich Low_complexity Low_complexity 1 43 0 6 680 1089 146 136 0 chr1 12480603 12480802 -184714630 + URR1A DNA MER1_type 1 226 0 6 680 290 290 14 0 chr1 12480814 12480883 -184714549 + MER5B DNA MER1_type 1 70 -108 6 680 595 248 49 56 chr1 12481706 12481868 -184713564 + B3A SINE B2 3 163 -35 6 680 784 277 113 13 chr1 12481880 12482118 -184713314 - B4 SINE B4 -29 263 2 6 680 751 113 48 83 chr1 12482477 12482622 -184712810 - B1_Mur4 SINE Alu -10 140 1 6 680 807 297 24 40 chr1 12483909 12484158 -184711274 + B4A SINE B4 48 292 0 6 680 359 21 21 0 chr1 12484179 12484227 -184711205 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 680 382 20 0 0 chr1 12484233 12484282 -184711150 - L1Md_F2 LINE L1 -20 6562 6514 6 680 363 301 48 16 chr1 12484335 12484460 -184710972 - MER20 DNA MER1_type -3 216 88 6 680 408 282 54 9 chr1 12484480 12484591 -184710841 - B1F1 SINE Alu -28 121 6 6 680 267 271 27 41 chr1 12484602 12484675 -184710757 - MER20 DNA MER1_type -138 81 10 6 680 387 151 0 64 chr1 12485631 12485709 -184709723 - ORR1C1 LTR MaLR 0 378 306 6 680 729 153 36 41 chr1 12485677 12485835 -184709597 + ORR1D1 LTR MaLR 130 329 -45 6 680 1111 50 43 0 chr1 12485987 12486127 -184709305 - B1_Mm SINE Alu -1 146 1 6 680 1767 184 53 6 chr1 12486368 12486729 -184708703 + ORR1C1 LTR MaLR 1 378 0 6 680 6933 195 38 27 chr1 12486730 12488221 -184707211 + ORR1C1-int LTR MaLR 3 1509 0 6 680 1817 209 56 3 chr1 12488222 12488577 -184706855 + ORR1C1 LTR MaLR 5 378 0 6 680 1729 70 0 0 chr1 12488644 12488873 -184706559 + L1Md_F LINE L1 295 523 -5996 6 680 296 299 53 98 chr1 12489292 12489537 -184705895 - RLTR15 LTR ERVK -103 256 23 6 680 288 111 0 0 chr1 12489799 12489844 -184705588 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 680 796 266 181 34 chr1 12489872 12490109 -184705323 - B4A SINE B4 -20 272 1 6 680 796 239 102 8 chr1 12492464 12492700 -184702732 + Lx6 LINE L1 7177 7434 -26 6 680 305 347 83 31 chr1 12493589 12493818 -184701614 - L2 LINE L2 -404 3015 2775 6 680 25 0 0 0 chr1 12494142 12494167 -184701265 + AT_rich Low_complexity Low_complexity 1 25 0 6 680 381 123 0 0 chr1 12494442 12494507 -184700925 + (CAGGA)n Simple_repeat Simple_repeat 4 68 0 6 680 317 115 0 55 chr1 12494585 12494640 -184700792 + B2_Mm2 SINE B2 1 52 -143 6 680 22 0 0 0 chr1 12494652 12494674 -184700758 + AT_rich Low_complexity Low_complexity 1 22 0 6 680 664 267 72 1 chr1 12494687 12495008 -184700424 + L1MC LINE L1 5144 5484 -849 6 680 296 264 117 9 chr1 12495175 12495286 -184700146 + MTC LTR MaLR 276 398 -23 6 680 188 0 0 69 chr1 12495310 12495339 -184700093 + (ATATG)n Simple_repeat Simple_repeat 2 28 0 6 680 700 10 62 0 chr1 12495355 12495452 -184699980 + (ATAGG)n Simple_repeat Simple_repeat 3 105 0 6 680 332 21 64 0 chr1 12495494 12495541 -184699891 + (ATATG)n Simple_repeat Simple_repeat 3 52 0 6 680 33 0 0 0 chr1 12495751 12495784 -184699648 + AT_rich Low_complexity Low_complexity 1 33 0 6 680 429 36 0 0 chr1 12495813 12495868 -184699564 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 680 2319 198 68 6 chr1 12496068 12496582 -184698850 + Lx7 LINE L1 6885 7430 -266 6 680 491 256 6 0 chr1 12496594 12496770 -184698662 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 680 675 228 0 0 chr1 12496788 12496968 -184698464 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 680 659 201 7 0 chr1 12496998 12497152 -184698280 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 680 481 239 54 49 chr1 12497172 12497357 -184698075 + Lx7 LINE L1 7507 7692 -4 6 680 23 0 0 0 chr1 12497357 12497380 -184698052 + AT_rich Low_complexity Low_complexity 1 23 0 6 680 369 0 0 0 chr1 12499029 12499070 -184696362 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 680 192 40 0 0 chr1 12501067 12501092 -184694340 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 680 612 0 0 0 chr1 12501304 12501372 -184694060 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 680 198 0 0 0 chr1 12501791 12501813 -184693619 + (A)n Simple_repeat Simple_repeat 1 22 0 3 680 25 0 0 0 chr1 12502222 12502247 -184693185 + AT_rich Low_complexity Low_complexity 1 25 0 4 680 8137 102 21 9 chr1 12502718 12504792 -184690640 + L1Md_F LINE L1 214 2306 -3577 5 680 3400 39 2 19 chr1 12504789 12505210 -184690222 + L1_Mm LINE L1 5174 5616 -540 6 680 7684 77 21 1 chr1 12505210 12506179 -184689253 + L1Md_F2 LINE L1 5588 6575 -7 7 680 1354 251 19 34 chr1 12506179 12506224 -184689208 + L1_Mm LINE L1 5617 5664 -492 6 680 219 103 0 0 chr1 12506645 12506684 -184688748 + (A)n Simple_repeat Simple_repeat 1 39 0 8 680 3659 30 0 0 chr1 12507059 12507455 -184687977 - MTA_Mm LTR MaLR 0 396 1 9 680 720 200 0 30 chr1 12507871 12508005 -184687427 + B1_Mus1 SINE Alu 19 148 0 1 680 242 310 7 51 chr1 12508096 12508223 -184687209 - ID4 SINE ID -29 123 5 1 680 404 186 0 0 chr1 12508649 12508719 -184686713 - B1_Mur1 SINE Alu -6 143 74 1 680 760 217 0 0 chr1 12508719 12508848 -184686584 - B1_Mur1 SINE Alu -18 131 3 1 680 23 54 0 0 chr1 12510060 12510097 -184685335 + AT_rich Low_complexity Low_complexity 1 37 0 1 680 258 105 0 0 chr1 12510135 12510173 -184685259 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 680 652 288 25 10 chr1 12510245 12510445 -184684987 - B3 SINE B2 -13 203 1 1 680 396 274 57 0 chr1 12510471 12510577 -184684855 - PB1D7 SINE Alu -7 113 2 1 680 296 305 11 0 chr1 12510733 12510828 -184684604 - MER77 LTR ERVL -4 603 508 1 680 591 258 84 68 chr1 12510832 12511023 -184684409 + MTEa LTR MaLR 186 379 0 1 680 1293 26 0 0 chr1 12512245 12512398 -184683034 + (TTCC)n Simple_repeat Simple_repeat 1 153 0 2 680 314 333 25 34 chr1 12512403 12512521 -184682911 + LTR16B LTR ERVL 341 457 -6 2 680 351 0 0 0 chr1 12512679 12512718 -184682714 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 680 1284 89 0 0 chr1 12512776 12512956 -184682476 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 680 189 107 0 0 chr1 12513357 12513385 -184682047 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2 680 213 338 26 13 chr1 12513415 12513493 -184681939 - ID4 SINE ID -3 80 2 2 680 732 267 71 24 chr1 12513738 12513949 -184681483 + ID_B1 SINE B4 4 224 0 2 680 22 56 0 0 chr1 12513996 12514032 -184681400 + AT_rich Low_complexity Low_complexity 1 36 0 2 680 276 177 50 12 chr1 12514149 12514229 -184681203 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 680 477 344 45 0 chr1 12514269 12514423 -184681009 - RSINE1 SINE B4 -2 163 3 2 680 911 252 79 7 chr1 12515062 12515342 -184680090 - Lx7 LINE L1 -1804 5892 5593 3 680 243 0 0 0 chr1 12517506 12517533 -184677899 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 680 332 308 102 11 chr1 12517863 12518129 -184677303 + Zaphod DNA Tip100 3639 3928 -103 3 680 3220 81 8 2 chr1 12518133 12518531 -184676901 + MTB LTR MaLR 1 400 0 3 680 1804 61 4 0 chr1 12518531 12518776 -184676656 + MTB-int LTR MaLR 1 246 -852 3 680 954 188 193 0 chr1 12519665 12519846 -184675586 - B3 SINE B2 0 216 1 3 680 21969 157 17 25 chr1 12520708 12524656 -184670776 + L1_Mus4 LINE L1 735 4653 -1230 3 680 1648 42 11 0 chr1 12524656 12524846 -184670586 + B2_Mm1t SINE B2 1 192 -1 3 680 21969 155 18 26 chr1 12524846 12525504 -184669928 + L1_Mus4 LINE L1 4654 5304 -579 3 680 6092 53 2 1 chr1 12525503 12526776 -184668656 + L1Md_F LINE L1 511 1785 -4098 3 680 2444 42 17 0 chr1 12526776 12527064 -184668368 + L1Md_F2 LINE L1 6290 6582 0 3 680 6825 111 54 2 chr1 12527073 12528346 -184667086 + L1_Mus4 LINE L1 5289 6636 0 3 680 258 242 59 29 chr1 12528606 12528674 -184666758 + PB1D10 SINE Alu 46 115 -2 3 680 352 331 132 51 chr1 12528776 12528973 -184666459 + MLT2B2 LTR ERVL 122 334 -181 4 680 28 0 0 0 chr1 12531345 12531373 -184664059 + AT_rich Low_complexity Low_complexity 1 28 0 4 680 1286 242 39 50 chr1 12531631 12531988 -184663444 - ORR1E LTR MaLR -4 355 3 4 680 225 273 148 38 chr1 12531988 12532127 -184663305 - MIRc SINE MIR -61 201 54 4 680 382 265 12 0 chr1 12533008 12533091 -184662341 + PB1D10 SINE Alu 15 98 -19 4 680 456 354 8 0 chr1 12533108 12533238 -184662194 + B1_Mur1 SINE Alu 3 133 -16 4 680 249 329 49 37 chr1 12533380 12533408 -184662024 + PB1D7 SINE Alu 16 43 -77 4 680 444 268 109 8 chr1 12533408 12533536 -184661896 + B1F SINE Alu 4 144 -5 4 680 444 256 31 0 chr1 12533536 12533635 -184661797 + B1F SINE Alu 44 144 -5 4 680 448 265 29 0 chr1 12533998 12534100 -184661332 - B1F SINE Alu -6 143 39 4 680 604 230 0 23 chr1 12534126 12534255 -184661177 - ORR1D2 LTR MaLR -244 126 1 4 680 5392 109 7 0 chr1 12534263 12535023 -184660409 - L1_Mus3 LINE L1 -54 5829 5065 5 680 4788 101 123 15 chr1 12535023 12535732 -184659700 + L1_Mus3 LINE L1 5829 6622 -16 5 680 2151 94 40 49 chr1 12535732 12536057 -184659375 + RLTRETN_Mm LTR ERVK 1 322 0 5 680 4788 101 123 15 chr1 12536057 12536072 -184659360 + L1_Mus3 LINE L1 6623 6631 -7 5 680 805 313 9 9 chr1 12536759 12536797 -184658635 - B3 SINE B2 0 216 179 5 680 402 21 0 0 chr1 12536797 12536844 -184658588 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 680 805 313 9 9 chr1 12536844 12537021 -184658411 - B3 SINE B2 -38 178 2 5 680 756 89 24 0 chr1 12537304 12537427 -184658005 + (GA)n Simple_repeat Simple_repeat 2 127 0 5 680 533 308 140 30 chr1 12537535 12537870 -184657562 + MLT1A LTR MaLR 1 372 -2 5 680 672 36 0 0 chr1 12538841 12538924 -184656508 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 680 183 100 0 0 chr1 12538929 12538959 -184656473 + (CATATA)n Simple_repeat Simple_repeat 2 31 0 5 680 1198 175 13 13 chr1 12539311 12539537 -184655895 - MTC LTR MaLR -5 416 191 5 680 2004 194 80 42 chr1 12539565 12540039 -184655393 - RLTR11A LTR ERVK -33 495 4 5 680 296 235 21 115 chr1 12540042 12540138 -184655294 - MTC LTR MaLR -235 172 86 5 680 220 220 0 0 chr1 12540138 12540188 -184655244 + T-rich Low_complexity Low_complexity 1 50 0 6 680 6870 10 0 6 chr1 12540190 12540919 -184654513 - L1Md_T LINE L1 -2 6580 5856 6 680 379 188 45 0 chr1 12540919 12540999 -184654433 - MTC LTR MaLR -308 99 1 5 680 229 254 14 14 chr1 12541043 12541115 -184654317 - MLT1D LTR MaLR -117 388 317 6 680 2616 135 122 4 chr1 12541138 12541629 -184653803 - RLTR31A_Mm LTR ERVK -35 549 1 6 680 653 0 13 0 chr1 12541630 12541707 -184653725 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 6 680 232 263 74 66 chr1 12541707 12541829 -184653603 - MLT1D LTR MaLR -188 317 195 6 680 388 230 196 65 chr1 12541822 12542036 -184653396 - RMER10A LTR ERVL -34 408 167 6 680 377 225 90 0 chr1 12542208 12542297 -184653135 + PB1D10 SINE Alu 1 97 -20 6 680 855 278 79 0 chr1 12542301 12542542 -184652890 + B4 SINE B4 1 260 -32 6 680 520 232 93 43 chr1 12542760 12542922 -184652510 + ID_B1 SINE B4 54 223 -1 6 680 1145 96 7 0 chr1 12543302 12543448 -184651984 + B1_Mus1 SINE Alu 2 148 0 6 680 243 0 0 0 chr1 12544042 12544069 -184651363 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 680 1091 97 14 0 chr1 12544104 12544249 -184651183 - B1_Mus1 SINE Alu -1 147 1 7 680 243 262 81 23 chr1 12544416 12544502 -184650930 - B1_Mur1 SINE Alu 0 149 59 7 680 278 333 65 59 chr1 12544721 12544890 -184650542 - MLT1C LTR MaLR 0 467 298 7 680 425 256 0 0 chr1 12544839 12544925 -184650507 - B1_Mus1 SINE Alu -55 93 8 7 680 396 298 250 19 chr1 12545017 12545291 -184650141 - MER45B DNA Tip100 -663 377 41 7 680 271 428 42 0 chr1 12545360 12545526 -184649906 - MER45B DNA Tip100 -867 173 1 7 680 234 351 27 13 chr1 12546066 12546216 -184649216 - L1M6 LINE L1 -6299 197 46 7 680 228 330 45 11 chr1 12546640 12546729 -184648703 - L2a LINE L2 -277 3149 3058 7 680 257 336 27 34 chr1 12546862 12547010 -184648422 - L2a LINE L2 -624 2795 2649 7 680 405 262 0 0 chr1 12547197 12547277 -184648155 + ID4 SINE ID 4 83 0 7 680 416 271 56 0 chr1 12547616 12547723 -184647709 - PB1D10 SINE Alu 0 117 5 7 680 604 297 26 0 chr1 12547649 12547804 -184647628 - ID_B1 SINE B4 -65 159 1 8 680 1826 47 13 25 chr1 12547976 12548215 -184647217 + L1Md_F2 LINE L1 6345 6580 -2 8 680 8296 149 87 11 chr1 12548512 12553902 -184641530 + L1_Mus1 LINE L1 377 6567 0 8 680 840 299 119 7 chr1 12554236 12554539 -184640893 + ORR1E LTR MaLR 21 357 -2 8 680 1313 203 62 16 chr1 12554962 12555283 -184640149 - RMER15 LTR ERVL 0 575 240 8 680 534 120 87 29 chr1 12555277 12555380 -184640052 - RMER15 LTR ERVL -440 135 27 8 680 1038 235 296 30 chr1 12557307 12557746 -184637686 - Lx8 LINE L1 -687 6786 6231 8 680 353 348 97 31 chr1 12557872 12558192 -184637240 - L1M5 LINE L1 -1299 4847 4507 8 680 593 300 138 16 chr1 12558484 12558731 -184636701 - MER45B DNA Tip100 -242 798 522 8 680 259 247 112 5 chr1 12558747 12558848 -184636584 - B4 SINE B4 -6 286 91 8 680 538 305 33 44 chr1 12558821 12559003 -184636429 - B4 SINE B4 -92 200 21 8 680 1274 284 133 7 chr1 12559001 12559437 -184635995 - MER45B DNA Tip100 -549 491 1 8 680 303 338 65 59 chr1 12559565 12559886 -184635546 - L1M5 LINE L1 -1707 4439 4117 8 680 391 342 18 0 chr1 12559995 12560106 -184635326 + RSINE1 SINE B4 3 115 -50 8 680 240 122 0 0 chr1 12560126 12560167 -184635265 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 680 320 238 109 40 chr1 12560217 12560392 -184635040 - L1M5 LINE L1 -2179 3967 3781 8 680 968 240 19 14 chr1 12560495 12560706 -184634726 - B3 SINE B2 -1 215 4 9 680 694 211 0 11 chr1 12560834 12561011 -184634421 + (TA)n Simple_repeat Simple_repeat 1 175 0 9 680 223 310 34 27 chr1 12561013 12561159 -184634273 + (TATATG)n Simple_repeat Simple_repeat 3 149 0 9 680 543 359 65 4 chr1 12561163 12561423 -184634009 - B4A SINE B4 -16 276 1 9 680 371 250 39 39 chr1 12561624 12561728 -184633704 + B1F SINE Alu 45 148 -1 9 680 183 222 0 0 chr1 12561793 12561838 -184633594 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 9 680 1141 260 75 23 chr1 12563429 12563827 -184631605 + MTD LTR MaLR 1 419 0 9 680 499 268 0 9 chr1 12563832 12563945 -184631487 + RSINE1 SINE B4 43 154 -11 9 680 2613 137 41 103 chr1 12564322 12564836 -184630596 + RLTR45 LTR ERVK 1 482 0 9 680 242 292 139 17 chr1 12564992 12565107 -184630325 - MER45B DNA Tip100 -21 1019 891 1 680 696 224 0 93 chr1 12565120 12565282 -184630150 - B1_Mur1 SINE Alu -2 147 1 1 680 350 304 29 19 chr1 12565390 12565494 -184629938 + B4 SINE B4 125 229 -63 1 680 418 91 0 57 chr1 12565969 12566039 -184629393 - RLTR15 LTR ERVK -293 66 1 1 680 329 164 0 14 chr1 12566217 12566291 -184629141 + G-rich Low_complexity Low_complexity 2 74 0 1 680 198 0 0 0 chr1 12567677 12567699 -184627733 + (G)n Simple_repeat Simple_repeat 1 22 0 1 680 192 216 0 0 chr1 12567930 12567981 -184627451 + GA-rich Low_complexity Low_complexity 1 51 0 1 680 26 0 0 0 chr1 12568014 12568040 -184627392 + AT_rich Low_complexity Low_complexity 1 26 0 1 680 4308 171 64 27 chr1 12568333 12569224 -184626208 + Lx5 LINE L1 5795 6718 -332 1 680 1723 205 12 18 chr1 12569515 12569843 -184625589 + Lx4B LINE L1 6729 7054 -4 1 680 330 114 47 19 chr1 12571474 12571581 -184623851 + (TTTG)n Simple_repeat Simple_repeat 2 111 0 1 680 868 258 27 31 chr1 12571650 12571874 -184623558 + B4A SINE B4 70 292 0 1 680 602 285 79 28 chr1 12574406 12574583 -184620849 - B3 SINE B2 -30 186 1 1 680 409 223 15 0 chr1 12575086 12575216 -184620216 + (TGG)n Simple_repeat Simple_repeat 1 132 0 1 680 524 65 13 0 chr1 12576294 12576371 -184619061 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 680 333 276 92 0 chr1 12576930 12577028 -184618404 + PB1D10 SINE Alu 5 111 -6 1 680 2568 111 76 8 chr1 12577096 12577479 -184617953 + RLTR9E LTR ERVK 1 409 0 1 680 8168 247 34 23 chr1 12577480 12580072 -184615360 + ETnERV-int LTR ERVK 2 2490 -3677 1 680 16954 99 12 12 chr1 12580154 12582496 -184612936 + ETnERV2-int LTR ERVK 4083 6425 -981 1 680 501 114 18 24 chr1 12582652 12582736 -184612696 + ETnERV-int LTR ERVK 7331 7402 -4 1 10 2826 118 10 7 chr1 12582739 12583147 -184612285 + RLTR9E LTR ERVK 1 409 0 1 681 542 274 32 0 chr1 12583173 12583297 -184612135 + B1F1 SINE Alu 11 138 -11 1 681 687 296 41 0 chr1 12583697 12583869 -184611563 - B3 SINE B2 0 216 38 1 681 449 279 142 15 chr1 12583943 12584188 -184611244 + L1ME1 LINE L1 5757 6029 -150 1 681 1829 48 26 0 chr1 12584409 12584637 -184610795 - L1Md_F3 LINE L1 0 6584 6351 1 681 302 152 0 17 chr1 12584698 12584758 -184610674 + (TTG)n Simple_repeat Simple_repeat 2 60 0 1 681 473 276 117 22 chr1 12584887 12585024 -184610408 - B4A SINE B4 -118 174 25 1 681 2224 111 3 10 chr1 12585447 12585757 -184609675 - RLTR10E LTR ERVK -3 308 1 1 681 11911 86 10 5 chr1 12585757 12587653 -184607779 - MMERVK10C-int LTR ERVK 0 7680 5752 1 681 8420 63 1 1 chr1 12587633 12588656 -184606776 - MMERVK10C-int LTR ERVK -1936 5645 4623 1 681 843 96 35 49 chr1 12589392 12589535 -184605897 - MMERVK10C-int LTR ERVK -2911 4670 4530 1 681 524 177 11 34 chr1 12589543 12589668 -184605764 - MMERVK10C-int LTR ERVK -2380 2464 2357 1 681 2213 142 40 3 chr1 12589673 12590303 -184605129 - ETnERV2-int LTR ERVK -3135 4271 3567 1 681 667 248 246 26 chr1 12590311 12590574 -184604858 - ETnERV2-int LTR ERVK -4632 2774 2454 1 681 522 195 88 0 chr1 12590587 12590700 -184604732 - RLTR19-int LTR ERVK -5077 1060 938 1 681 254 247 103 41 chr1 12590687 12590784 -184604648 - RLTR19-int LTR ERVK -5449 688 586 1 681 1619 158 105 53 chr1 12590750 12591146 -184604286 - ETnERV2-int LTR ERVK -4747 659 312 1 681 3477 162 91 76 chr1 12591291 12592197 -184603235 - MMERVK10C-int LTR ERVK -6662 919 1 1 681 2196 121 3 10 chr1 12592202 12592512 -184602920 - RLTR10E LTR ERVK -3 308 1 1 681 2412 151 73 25 chr1 12592512 12592684 -184602748 + RLTR20A LTR ERVK 19 190 -351 1 681 1055 117 0 6 chr1 12592684 12592865 -184602567 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 1 681 270 0 0 0 chr1 12592868 12592898 -184602534 + (GAGAA)n Simple_repeat Simple_repeat 1 30 0 1 681 2412 151 73 25 chr1 12592898 12593129 -184602303 + RLTR20A LTR ERVK 191 434 -107 1 681 411 21 0 0 chr1 12593129 12593177 -184602255 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 681 2412 151 73 25 chr1 12593177 12593217 -184602215 + RLTR20A LTR ERVK 435 486 -55 1 681 212 315 0 0 chr1 12593236 12593290 -184602142 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 681 347 208 91 30 chr1 12594488 12594587 -184600845 + PB1D9 SINE Alu 16 120 0 1 681 1120 95 7 7 chr1 12595209 12595357 -184600075 + B1_Mus1 SINE Alu 1 148 0 1 681 234 0 0 0 chr1 12595363 12595389 -184600043 + (A)n Simple_repeat Simple_repeat 1 26 0 1 681 1951 262 87 106 chr1 12595538 12595907 -184599525 + L1MC LINE L1 4044 4430 -1716 1 681 783 284 35 5 chr1 12595907 12596109 -184599323 - B3 SINE B2 -7 209 2 1 681 254 69 16 49 chr1 12596114 12596175 -184599257 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 1 681 1951 262 87 106 chr1 12596175 12596884 -184598548 + L1MC LINE L1 4436 5082 -1064 1 681 340 269 86 43 chr1 12596884 12597024 -184598408 - B1F SINE Alu -3 146 1 1 681 1951 262 87 106 chr1 12597024 12597205 -184598227 + L1MC LINE L1 5083 5286 -860 1 681 627 294 40 5 chr1 12597191 12597393 -184598039 + L1MC1 LINE L1 6069 6277 -56 1 681 1355 217 145 8 chr1 12597406 12597778 -184597654 - RMER15 LTR ERVL -14 561 139 1 681 289 222 10 10 chr1 12597908 12598008 -184597424 + GA-rich Low_complexity Low_complexity 2 101 0 1 681 204 268 53 53 chr1 12598188 12598263 -184597169 + L2 LINE L2 2028 2102 -1317 1 681 1645 235 88 8 chr1 12598315 12598692 -184596740 + MTD LTR MaLR 4 410 -9 1 681 822 232 0 0 chr1 12598727 12598878 -184596554 - B3A SINE B2 -46 152 2 1 681 199 366 35 7 chr1 12598909 12599052 -184596380 + L2 LINE L2 2171 2317 -1102 1 681 888 280 78 12 chr1 12599447 12599704 -184595728 + B4A SINE B4 1 274 -18 1 681 305 293 50 0 chr1 12600225 12600324 -184595108 + PB1D10 SINE Alu 7 110 -7 1 681 206 140 0 57 chr1 12600736 12600789 -184594643 + (GTTTG)n Simple_repeat Simple_repeat 1 50 0 1 681 3466 48 179 2 chr1 12600837 12601272 -184594160 + RLTR1B LTR ERV1 1 512 0 1 681 183 355 54 39 chr1 12601329 12601458 -184593974 - L2a LINE L2 -307 3119 2989 1 681 28 0 0 0 chr1 12601626 12601654 -184593778 + AT_rich Low_complexity Low_complexity 1 28 0 1 681 349 253 12 12 chr1 12601750 12601830 -184593602 - ID4 SINE ID -2 81 2 1 681 428 320 178 37 chr1 12602203 12602557 -184592875 + MLT1G1 LTR MaLR 164 567 -12 1 681 384 260 37 28 chr1 12603759 12603866 -184591566 - B3A SINE B2 -5 193 86 1 681 852 258 119 30 chr1 12604529 12604797 -184590635 + B4A SINE B4 1 292 0 1 681 232 219 0 0 chr1 12607089 12607130 -184588302 + polypurine Low_complexity Low_complexity 4 44 0 1 681 285 224 69 0 chr1 12608238 12608296 -184587136 - B3A SINE B2 -136 62 1 1 681 417 293 17 0 chr1 12608323 12608439 -184586993 - PB1D9 SINE Alu -2 118 1 1 681 497 222 0 32 chr1 12608885 12609071 -184586361 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 681 2128 192 76 25 chr1 12609267 12609743 -184585689 + RLTR16 LTR ERVK 6 505 0 1 681 333 0 0 0 chr1 12609945 12609982 -184585450 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 681 275 278 0 65 chr1 12611097 12611174 -184584258 + MLT1M LTR MaLR 115 186 -486 1 681 251 191 16 0 chr1 12611331 12611394 -184584038 + GA-rich Low_complexity Low_complexity 3 66 0 1 681 304 327 255 20 chr1 12612286 12612829 -184582603 - L1MC4 LINE L1 -457 7585 6915 1 681 2751 163 27 10 chr1 12613138 12613619 -184581813 + RMER15 LTR ERVL 1 489 -86 1 681 3094 124 42 2 chr1 12613619 12614121 -184581311 + RLTR28 LTR ERVL 1 522 -2 1 681 521 182 23 0 chr1 12614125 12614213 -184581219 + RMER15 LTR ERVL 486 575 0 1 681 849 204 0 0 chr1 12614253 12614395 -184581037 + B1_Mur2 SINE Alu 7 148 -1 1 681 865 240 139 36 chr1 12614397 12614648 -184580784 - MTD LTR MaLR -43 376 100 1 681 427 321 81 78 chr1 12614791 12615075 -184580357 - B4 SINE B4 -7 285 1 1 681 20247 119 137 42 chr1 12615410 12616941 -184578491 - L1_Mus2 LINE L1 0 6566 4826 1 681 1101 117 6 0 chr1 12616941 12617104 -184578328 + B2_Mm1a SINE B2 3 166 -27 1 681 20247 119 137 42 chr1 12617104 12620831 -184574601 - L1_Mus2 LINE L1 0 4825 586 1 681 1630 195 29 20 chr1 12621239 12621580 -184573852 + Lx5 LINE L1 6707 7050 0 1 681 442 301 90 14 chr1 12622892 12623037 -184572395 + B3A SINE B2 5 160 -38 1 681 1257 268 45 9 chr1 12623045 12623377 -184572055 - MTD LTR MaLR 0 419 76 1 681 953 241 78 109 chr1 12623377 12623789 -184571643 + MT2A LTR ERVL 1 530 -71 1 681 327 25 0 0 chr1 12623791 12623831 -184571601 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 681 729 294 117 7 chr1 12624024 12624322 -184571110 - ORR1E LTR MaLR -3 376 1 1 681 1623 42 0 0 chr1 12625282 12625474 -184569958 + B2_Mm1t SINE B2 2 193 0 1 681 211 234 0 0 chr1 12626349 12626396 -184569036 + T-rich Low_complexity Low_complexity 1 47 0 1 681 563 229 90 22 chr1 12627564 12627698 -184567734 + B1_Mur1 SINE Alu 4 146 -3 1 681 25 31 0 0 chr1 12627698 12627730 -184567702 + AT_rich Low_complexity Low_complexity 1 32 0 1 681 453 281 13 58 chr1 12627806 12627961 -184567471 + B1_Mur1 SINE Alu 1 148 -1 1 681 602 276 302 5 chr1 12628231 12628446 -184566986 + B4A SINE B4 1 279 -13 1 681 185 94 31 0 chr1 12628452 12628484 -184566948 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 681 253 252 145 8 chr1 12628497 12628621 -184566811 + L1M3 LINE L1 5644 5784 -384 1 681 236 369 8 0 chr1 12629199 12629321 -184566111 + L1MA10 LINE L1 6195 6317 -17 1 681 235 231 13 145 chr1 12629524 12629600 -184565832 + ID4_ SINE ID 1 66 -17 1 681 1235 296 130 2 chr1 12629600 12630060 -184565372 - MT2A LTR ERVL 0 533 15 1 681 243 88 0 0 chr1 12630079 12630113 -184565319 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 1 681 1025 141 0 6 chr1 12630113 12630292 -184565140 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 681 297 0 0 0 chr1 12630292 12630325 -184565107 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 1 681 375 273 100 81 chr1 12630527 12630608 -184564824 - Lx8 LINE L1 -163 7310 7235 1 681 765 154 196 31 chr1 12630608 12630802 -184564630 - URR1A DNA MER1_type 0 226 1 1 681 375 273 100 81 chr1 12630802 12630979 -184564453 - Lx8 LINE L1 -239 7234 7047 1 681 256 305 116 0 chr1 12630991 12631086 -184564346 - Lx8 LINE L1 -739 6734 6629 1 681 652 295 62 35 chr1 12631387 12631718 -184563714 - RLTR16 LTR ERVK -299 393 7 1 681 868 244 44 0 chr1 12631719 12631948 -184563484 - Lx8 LINE L1 -838 6635 6397 1 681 314 338 87 45 chr1 12631964 12632241 -184563191 + ORR1E LTR MaLR 44 324 -50 1 681 302 0 26 0 chr1 12632375 12632413 -184563019 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 681 1143 65 0 0 chr1 12632413 12632551 -184562881 - B1_Mm SINE Alu -9 138 1 1 681 501 17 0 0 chr1 12632683 12632741 -184562691 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 681 21 0 0 0 chr1 12632879 12632900 -184562532 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 432 0 0 0 chr1 12632939 12632987 -184562445 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 681 502 259 56 0 chr1 12633162 12633270 -184562162 + ID_B1 SINE B4 111 224 0 2 681 24 0 0 0 chr1 12633807 12633831 -184561601 + AT_rich Low_complexity Low_complexity 1 24 0 2 681 2930 171 49 18 chr1 12633875 12634422 -184561010 - RLTR20D LTR ERVK 0 568 5 2 681 305 330 17 25 chr1 12634715 12634833 -184560599 + MIR SINE MIR 77 193 -69 2 681 594 0 0 0 chr1 12634855 12634921 -184560511 + (GAATG)n Simple_repeat Simple_repeat 2 67 0 2 681 717 165 29 52 chr1 12635016 12635189 -184560243 - Lx7 LINE L1 0 7696 7528 2 681 3151 190 43 53 chr1 12635189 12636207 -184559225 - L1_Mur3 LINE L1 -1257 4623 3712 2 681 249 108 0 0 chr1 12636208 12636245 -184559187 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 2 681 12262 152 101 127 chr1 12636719 12638986 -184556446 - L1VL4 LINE L1 -940 4943 2465 2 681 2382 181 81 2 chr1 12638986 12639429 -184556003 - RLTR17 LTR ERVK 0 692 215 2 681 12262 152 101 127 chr1 12639429 12640698 -184554734 - L1VL4 LINE L1 -940 2464 1076 2 681 3125 196 24 3 chr1 12640696 12641411 -184554021 - L1_Mur3 LINE L1 -3295 2585 1856 2 681 2112 190 35 5 chr1 12641411 12641787 -184553645 + MTC LTR MaLR 1 387 -34 2 681 327 224 0 0 chr1 12641850 12641926 -184553506 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 681 863 182 0 0 chr1 12641926 12642074 -184553358 - B2_Mm2 SINE B2 -18 177 30 2 681 971 89 0 56 chr1 12642124 12642267 -184553165 + B1_Mus1 SINE Alu 1 135 -13 2 681 1010 143 0 6 chr1 12642268 12642444 -184552988 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 2 681 267 31 0 0 chr1 12642445 12642477 -184552955 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 2 681 328 319 82 25 chr1 12642499 12642779 -184552653 + HAL1 LINE L1 43 338 -2169 2 681 2390 92 81 5 chr1 12643273 12643655 -184551777 + IAPLTR2a LTR ERVK 1 411 0 2 681 207 0 0 0 chr1 12643671 12643694 -184551738 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 681 591 225 64 21 chr1 12643694 12643835 -184551597 + B1_Mur4 SINE Alu 2 148 -2 2 681 741 259 0 0 chr1 12643862 12643997 -184551435 - B1_Mur1 SINE Alu -8 141 7 2 681 495 306 93 26 chr1 12644323 12644474 -184550958 + ID_B1 SINE B4 2 162 -62 2 681 239 258 87 33 chr1 12644409 12644501 -184550931 - YREP_Mm Unknown Unknown -1513 299 203 2 681 215 340 52 31 chr1 12644418 12644515 -184550917 + B1_Mus1 SINE Alu 27 125 -23 2 681 324 308 149 31 chr1 12644772 12644933 -184550499 - L1MB5 LINE L1 -317 5857 5678 2 681 255 274 97 45 chr1 12644933 12645109 -184550323 + L1MB5 LINE L1 5954 6138 -36 2 681 1771 265 157 32 chr1 12645127 12645785 -184549647 + Lx9 LINE L1 6581 7320 -324 2 681 974 248 25 0 chr1 12647061 12647259 -184548173 + B3 SINE B2 11 213 -3 2 681 1337 241 78 5 chr1 12648543 12648977 -184546455 - L1MB7 LINE L1 -1 6183 5718 2 681 471 208 0 81 chr1 12649045 12649168 -184546264 + B1_Mur1 SINE Alu 36 144 -6 2 681 328 341 67 67 chr1 12649277 12649516 -184545916 - ORR1E LTR MaLR -120 239 1 2 681 921 252 180 16 chr1 12649592 12649712 -184545720 + MTD LTR MaLR 18 151 -268 2 681 530 98 0 12 chr1 12649712 12649795 -184545637 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 681 921 252 180 16 chr1 12649795 12649997 -184545435 + MTD LTR MaLR 152 392 -27 2 681 739 181 53 194 chr1 12650168 12650290 -184545142 - Lx7 LINE L1 -4 7692 7564 2 681 949 150 98 0 chr1 12650290 12650463 -184544969 + B2_Mm2 SINE B2 2 191 -4 2 681 941 76 122 0 chr1 12650468 12650599 -184544833 + B1_Mus1 SINE Alu 2 148 0 2 681 739 181 53 194 chr1 12650599 12650846 -184544586 - Lx7 LINE L1 -133 7563 7370 2 681 7010 170 29 25 chr1 12650846 12651029 -184544403 - L1_Mur3 LINE L1 -374 5506 5307 2 681 2220 215 7 7 chr1 12651029 12651488 -184543944 + Lx2B LINE L1 6523 6981 -19 2 681 7010 170 29 25 chr1 12651488 12652183 -184543249 - L1_Mur3 LINE L1 -574 5306 4630 2 681 414 0 0 0 chr1 12652183 12652229 -184543203 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 681 7010 170 29 25 chr1 12652229 12652859 -184542573 - L1_Mur3 LINE L1 -1251 4629 3993 2 681 299 147 0 0 chr1 12652860 12652928 -184542504 - L1_Mur3 LINE L1 -6465 1263 1196 2 681 36539 41 0 3 chr1 12652933 12658616 -184536816 - L1Md_T LINE L1 -534 6051 288 2 681 2819 198 30 8 chr1 12658616 12659253 -184536179 - L1_Mur3 LINE L1 -6530 1198 548 2 681 22 0 0 0 chr1 12659377 12659399 -184536033 + AT_rich Low_complexity Low_complexity 1 22 0 2 681 753 279 36 91 chr1 12660024 12660332 -184535100 - B4A SINE B4 0 292 2 2 681 1093 277 137 21 chr1 12662757 12662809 -184532623 + L1M2 LINE L1 4352 4417 -1726 2 681 519 17 0 0 chr1 12662809 12662869 -184532563 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 681 1093 277 137 21 chr1 12662869 12663672 -184531760 + L1M2 LINE L1 4418 5306 -837 2 681 592 279 29 0 chr1 12664049 12664185 -184531247 - RSINE1 SINE B4 -23 142 3 2 681 339 342 35 0 chr1 12664247 12664361 -184531071 - PB1D9 SINE Alu -2 118 1 2 681 189 0 0 0 chr1 12664453 12664474 -184530958 + (A)n Simple_repeat Simple_repeat 1 21 0 2 681 1895 22 9 0 chr1 12664896 12665122 -184530310 - L1Md_F3 LINE L1 -14 6570 6343 2 681 829 197 115 16 chr1 12665576 12665767 -184529665 + B3 SINE B2 2 211 -5 2 681 776 208 7 20 chr1 12665791 12665943 -184529489 + B1_Mur4 SINE Alu 1 150 0 2 681 327 325 36 12 chr1 12666132 12666216 -184529216 - B1F1 SINE Alu -55 94 9 2 681 418 135 40 0 chr1 12667030 12667104 -184528328 - RMER1C Other Other 0 1342 1266 2 681 2745 31 0 8 chr1 12667362 12667718 -184527714 - MTA_Mm LTR MaLR -43 353 1 2 681 1371 204 102 57 chr1 12668515 12668869 -184526563 + ORR1D2 LTR MaLR 1 370 0 2 681 326 159 20 4 chr1 12669252 12669333 -184526099 - B1_Mus1 SINE Alu -34 86 2 2 681 288 295 87 51 chr1 12669333 12669633 -184525799 + RMER10A LTR ERVL 116 426 -16 2 681 692 23 0 11 chr1 12671757 12671844 -184523588 + (TTCTC)n Simple_repeat Simple_repeat 5 90 0 2 681 183 42 0 0 chr1 12671903 12671927 -184523505 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 681 316 260 14 0 chr1 12671928 12672001 -184523431 - B1_Mur1 SINE Alu -13 136 63 2 681 202 338 53 64 chr1 12672203 12672374 -184523058 + MIR SINE MIR 32 200 -62 2 681 3205 72 2 2 chr1 12672567 12672988 -184522444 - L1_Mus2 LINE L1 -1 6565 6145 2 681 570 240 8 0 chr1 12673884 12674013 -184521419 - ID_B1 SINE B4 -4 220 91 2 681 294 234 0 0 chr1 12674296 12674360 -184521072 + ID_B1 SINE B4 90 153 -71 2 681 254 259 7 20 chr1 12674418 12674564 -184520868 + CT-rich Low_complexity Low_complexity 2 145 0 2 681 342 0 0 0 chr1 12674566 12674604 -184520828 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 681 315 218 42 4 chr1 12674699 12674770 -184520662 - B1F2 SINE Alu -32 85 17 2 681 1927 162 19 3 chr1 12675980 12676302 -184519130 + ORR1A2 LTR MaLR 1 327 0 2 681 649 183 122 0 chr1 12676549 12676680 -184518752 + B1_Mur1 SINE Alu 3 149 0 2 681 1124 88 0 0 chr1 12676832 12676979 -184518453 - B1_Mus2 SINE Alu 0 147 1 2 681 367 260 52 0 chr1 12677295 12677391 -184518041 - B1F SINE Alu -15 134 34 2 681 270 318 0 0 chr1 12677541 12677604 -184517828 - B4A SINE B4 -2 290 228 2 681 524 212 7 0 chr1 12677607 12677744 -184517688 + CT-rich Low_complexity Low_complexity 3 140 0 2 681 541 288 39 90 chr1 12677746 12677951 -184517481 - B4 SINE B4 -46 246 59 2 681 1530 170 141 6 chr1 12677951 12678277 -184517155 - ORR1D1 LTR MaLR -4 370 1 2 681 541 282 39 91 chr1 12678277 12678327 -184517105 - B4 SINE B4 -234 58 2 2 681 322 319 71 36 chr1 12678530 12678670 -184516762 + RSINE1 SINE B4 21 165 0 2 681 943 230 10 0 chr1 12678695 12678895 -184516537 - B3 SINE B2 -9 207 6 2 681 480 77 0 0 chr1 12679270 12679335 -184516097 + (TCCCC)n Simple_repeat Simple_repeat 5 69 0 2 681 405 115 0 0 chr1 12680179 12680257 -184515175 + (CAGG)n Simple_repeat Simple_repeat 4 81 0 2 681 234 160 0 0 chr1 12681369 12681419 -184514013 + (CACCC)n Simple_repeat Simple_repeat 3 52 0 2 681 921 32 6 49 chr1 12682795 12682957 -184512475 + (TCTCC)n Simple_repeat Simple_repeat 2 156 0 2 681 192 40 0 0 chr1 12685701 12685726 -184509706 + (C)n Simple_repeat Simple_repeat 1 25 0 2 681 277 311 154 6 chr1 12686036 12686198 -184509234 + L2 LINE L2 2569 2754 -665 2 681 286 209 45 0 chr1 12686466 12686533 -184508899 - tRNA-Ala-GCY_ tRNA tRNA -3 72 3 2 681 598 293 115 6 chr1 12687599 12687781 -184507651 + B3 SINE B2 2 203 -13 2 681 320 247 55 22 chr1 12688448 12688539 -184506893 - PB1D10 SINE Alu -1 116 23 2 681 508 285 34 27 chr1 12688873 12689021 -184506411 + RSINE1 SINE B4 11 159 -6 2 681 580 198 103 43 chr1 12689219 12689404 -184506028 + B3A SINE B2 2 197 -1 2 681 357 24 0 0 chr1 12690586 12690628 -184504804 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 681 628 272 17 11 chr1 12690643 12690818 -184504614 + B3 SINE B2 38 213 -3 2 681 224 286 0 0 chr1 12690975 12691024 -184504408 + polypurine Low_complexity Low_complexity 4 52 0 2 681 426 224 10 0 chr1 12691357 12691455 -184503977 - L1MA5 LINE L1 -8 6292 6194 2 681 682 205 33 123 chr1 12691815 12692026 -184503406 - B3A SINE B2 -5 193 2 2 681 461 328 8 0 chr1 12692522 12692656 -184502776 - ID_B1 SINE B4 -10 214 80 2 681 1039 224 68 38 chr1 12692886 12692957 -184502475 + B4 SINE B4 2 80 -212 2 681 192 77 0 0 chr1 12692957 12692983 -184502449 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2 681 1039 224 68 38 chr1 12692983 12693176 -184502256 + B4 SINE B4 81 274 -18 2 681 465 19 0 0 chr1 12693192 12693246 -184502186 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 681 530 168 158 16 chr1 12693768 12693895 -184501537 + B1F2 SINE Alu 5 149 0 2 681 486 0 0 0 chr1 12695061 12695115 -184500317 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 681 288 0 0 0 chr1 12695398 12695430 -184500002 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 681 755 148 8 8 chr1 12695432 12695561 -184499871 - B1_Mus2 SINE Alu -6 141 13 2 681 283 260 110 0 chr1 12695569 12695642 -184499790 - ID2 SINE ID -2 81 1 3 681 396 59 0 0 chr1 12695685 12695736 -184499696 + (TTGGGG)n Simple_repeat Simple_repeat 5 55 0 3 681 563 216 164 18 chr1 12695757 12695922 -184499510 + B3A SINE B2 4 192 -6 3 681 1403 25 25 0 chr1 12696163 12696443 -184498989 + (TG)n Simple_repeat Simple_repeat 1 287 0 3 681 437 0 19 0 chr1 12697247 12697300 -184498132 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 681 1120 66 0 0 chr1 12697300 12697437 -184497995 - B1_Mm SINE Alu -10 137 1 3 681 28 0 0 0 chr1 12698272 12698300 -184497132 + AT_rich Low_complexity Low_complexity 1 28 0 3 681 455 259 74 0 chr1 12698308 12698443 -184496989 - RSINE1 SINE B4 -19 146 2 3 681 1265 85 85 0 chr1 12698453 12698470 -184496962 - B2_Mm1a SINE B2 0 193 177 3 681 375 23 0 0 chr1 12698470 12698514 -184496918 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3 681 1265 85 85 0 chr1 12698514 12698673 -184496759 - B2_Mm1a SINE B2 -17 176 3 3 681 189 0 0 0 chr1 12698948 12698969 -184496463 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 681 567 43 0 0 chr1 12698969 12699038 -184496394 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 681 904 270 27 8 chr1 12699096 12699357 -184496075 + Tigger5 DNA MER2_type 2133 2398 -8 3 681 768 210 0 7 chr1 12700180 12700319 -184495113 - RSINE1 SINE B4 -17 148 11 3 681 492 18 0 0 chr1 12700541 12700598 -184494834 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 681 193 234 0 86 chr1 12700617 12700687 -184494745 + L2a LINE L2 3323 3425 -1 3 681 343 132 0 29 chr1 12701193 12701263 -184494169 + CT-rich Low_complexity Low_complexity 1 68 0 3 681 297 0 0 0 chr1 12701261 12701294 -184494138 + (CCA)n Simple_repeat Simple_repeat 1 33 0 3 681 373 202 45 0 chr1 12701341 12701430 -184494002 - B1_Mur1 SINE Alu -20 129 37 3 681 371 283 178 36 chr1 12702170 12702423 -184493009 + B4 SINE B4 4 292 0 3 681 225 154 0 0 chr1 12702576 12702615 -184492817 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 681 441 0 0 0 chr1 12703023 12703072 -184492360 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3 681 248 219 0 0 chr1 12704120 12704181 -184491251 - PB1D10 SINE Alu -1 148 65 3 681 819 189 0 7 chr1 12704394 12704538 -184490894 + B1_Mus2 SINE Alu 1 143 -4 3 681 302 292 153 84 chr1 12705569 12705831 -184489601 - LTR53 LTR ERVL -43 476 197 3 681 437 194 97 0 chr1 12706256 12706349 -184489083 + B3 SINE B2 40 141 -75 3 681 2699 54 6 0 chr1 12706350 12706685 -184488747 + L1_Mus2 LINE L1 5776 6112 -454 3 681 368 215 17 93 chr1 12706879 12706997 -184488435 + PB1D9 SINE Alu 3 111 -9 3 681 1018 113 13 0 chr1 12707390 12707549 -184487883 + B2_Mm1t SINE B2 17 177 -16 3 681 379 127 348 18 chr1 12707617 12707729 -184487703 + B2_Mm2 SINE B2 47 195 0 3 681 282 164 0 0 chr1 12707729 12707784 -184487648 + GA-rich Low_complexity Low_complexity 1 55 0 3 681 1248 77 0 0 chr1 12707786 12707955 -184487477 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 3 681 237 33 0 0 chr1 12709884 12709914 -184485518 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 681 252 0 0 0 chr1 12709914 12709941 -184485491 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 681 396 0 0 0 chr1 12709946 12709990 -184485442 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 681 461 254 26 0 chr1 12710050 12710164 -184485268 + PB1D10 SINE Alu 1 117 0 3 681 29 47 0 0 chr1 12710183 12710226 -184485206 + AT_rich Low_complexity Low_complexity 1 43 0 3 681 627 200 160 57 chr1 12710737 12710912 -184484520 - B3A SINE B2 -2 193 1 3 681 647 221 243 6 chr1 12711404 12711577 -184483855 - B3 SINE B2 -2 214 1 3 681 269 320 0 0 chr1 12711784 12711862 -184483570 - ID4_ SINE ID -4 79 2 3 681 513 0 0 0 chr1 12712235 12712292 -184483140 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 681 207 0 0 0 chr1 12712292 12712314 -184483118 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 681 723 252 93 56 chr1 12712393 12712405 -184483027 - B4 SINE B4 -13 279 268 3 681 480 122 0 0 chr1 12712405 12712487 -184482945 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 681 723 252 93 56 chr1 12712487 12712540 -184482892 - B4 SINE B4 -25 267 224 3 681 186 43 0 0 chr1 12712540 12712563 -184482869 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 681 723 252 93 56 chr1 12712563 12712765 -184482667 - B4 SINE B4 -69 223 3 3 681 352 301 44 7 chr1 12713337 12713474 -184481958 - B3A SINE B2 -53 145 4 3 681 22 0 0 0 chr1 12713822 12713844 -184481588 + AT_rich Low_complexity Low_complexity 1 22 0 3 682 303 110 0 58 chr1 12714074 12714161 -184481271 + T-rich Low_complexity Low_complexity 3 84 0 3 682 1138 48 0 20 chr1 12714162 12714311 -184481121 - B1_Mus2 SINE Alu 0 147 2 3 682 463 323 69 0 chr1 12714520 12714650 -184480782 + B1F SINE Alu 10 148 -1 3 682 255 219 233 0 chr1 12714697 12714770 -184480662 + B1F SINE Alu 49 138 -11 3 682 487 288 0 8 chr1 12714828 12714961 -184480471 + B1F SINE Alu 5 136 -13 3 682 793 250 49 5 chr1 12716291 12716496 -184478936 - B3 SINE B2 0 216 3 3 682 279 79 0 0 chr1 12716917 12716955 -184478477 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 3 682 1017 223 149 26 chr1 12716961 12717269 -184478163 + ORR1D1 LTR MaLR 29 374 0 3 682 413 231 88 32 chr1 12717373 12717498 -184477934 + B1F SINE Alu 1 132 -17 3 682 192 286 18 0 chr1 12717685 12717741 -184477691 - MIR SINE MIR -150 112 56 3 682 213 300 18 18 chr1 12719789 12719901 -184475531 + PB1D10 SINE Alu 1 112 -5 3 682 183 42 0 0 chr1 12720312 12720336 -184475096 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 682 242 237 26 13 chr1 12720730 12720807 -184474625 + B4 SINE B4 6 83 -209 3 682 315 0 0 0 chr1 12720907 12720942 -184474490 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 682 432 301 111 58 chr1 12721136 12721481 -184473951 - ORR1E LTR MaLR -3 376 8 3 682 666 230 114 6 chr1 12721861 12722036 -184473396 - ID_B1 SINE B4 -2 222 29 3 682 225 0 0 0 chr1 12722103 12722128 -184473304 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 682 476 269 0 9 chr1 12722136 12722241 -184473191 - RSINE1 SINE B4 -54 111 8 3 682 218 194 14 0 chr1 12722284 12722356 -184473076 + GA-rich Low_complexity Low_complexity 1 73 0 3 682 1355 175 83 14 chr1 12722430 12722708 -184472724 - ORR1A4 LTR MaLR 0 329 33 3 682 349 280 32 11 chr1 12722715 12722809 -184472623 - B3 SINE B2 -114 102 7 3 682 2001 107 9 56 chr1 12722914 12723252 -184472180 - RLTRETN_Mm LTR ERVK 0 322 1 3 682 378 0 0 0 chr1 12724455 12724497 -184470935 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 682 730 280 39 0 chr1 12725803 12725985 -184469447 - B3A SINE B2 -9 189 1 3 682 1122 70 21 0 chr1 12727565 12727708 -184467724 - B1_Mus2 SINE Alu 0 147 2 3 682 9026 92 20 8 chr1 12727924 12729658 -184465774 - L1_Mus1 LINE L1 0 6567 4817 3 682 3002 57 34 5 chr1 12729658 12730043 -184465389 - MTA_Mm LTR MaLR 0 396 1 3 682 9026 111 0 11 chr1 12730043 12730260 -184465172 - L1_Mus1 LINE L1 -1067 4816 4601 3 682 201 204 0 22 chr1 12730734 12730779 -184464653 + CT-rich Low_complexity Low_complexity 2 45 0 3 682 267 31 0 0 chr1 12730989 12731021 -184464411 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 682 793 107 53 0 chr1 12731150 12731281 -184464151 + B1_Mus2 SINE Alu 10 147 0 3 682 278 50 25 0 chr1 12731435 12731475 -184463957 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 682 476 189 132 0 chr1 12732062 12732168 -184463264 - B1_Mur1 SINE Alu -9 140 21 3 682 802 150 51 32 chr1 12732202 12732360 -184463072 + B2_Mm2 SINE B2 1 161 -34 3 682 284 0 28 0 chr1 12732360 12732396 -184463036 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 682 253 276 52 13 chr1 12732566 12732643 -184462789 - ID4_ SINE ID 0 83 4 3 682 217 277 145 0 chr1 12732671 12732754 -184462678 - PB1 SINE Alu -12 115 21 3 682 900 170 146 21 chr1 12733462 12733654 -184461778 - B3 SINE B2 0 216 1 3 682 873 103 14 14 chr1 12734053 12734201 -184461231 - URR1A DNA MER1_type 0 226 79 3 682 290 354 0 33 chr1 12735521 12735641 -184459791 + PB1D10 SINE Alu 1 116 -1 3 682 352 253 165 80 chr1 12735933 12736109 -184459323 + B3A SINE B2 1 191 -4 3 682 255 135 0 0 chr1 12736155 12736185 -184459247 + (A)n Simple_repeat Simple_repeat 1 30 0 3 682 1279 20 0 0 chr1 12736185 12736332 -184459100 + B1_Mus2 SINE Alu 1 147 0 3 682 255 135 0 0 chr1 12736332 12736353 -184459079 + (A)n Simple_repeat Simple_repeat 1 21 0 3 682 339 336 232 34 chr1 12736419 12736899 -184458533 - L2 LINE L2 -461 2958 2384 3 682 316 242 71 31 chr1 12736952 12737050 -184458382 + PB1D10 SINE Alu 1 102 -15 3 682 258 229 0 91 chr1 12737189 12737266 -184458166 + B2_Mm2 SINE B2 1 70 -125 3 682 222 368 11 63 chr1 12737289 12737463 -184457969 - L2 LINE L2 -1617 1802 1638 3 682 407 115 0 0 chr1 12737472 12737533 -184457899 + B3 SINE B2 4 64 -152 3 682 284 318 104 52 chr1 12738301 12738520 -184456912 + B4A SINE B4 55 284 -8 3 682 728 94 50 0 chr1 12738521 12738680 -184456752 + (CAGA)n Simple_repeat Simple_repeat 2 168 0 3 682 461 246 21 69 chr1 12740095 12740239 -184455193 - MTE2b LTR MaLR -231 148 12 3 682 303 316 13 0 chr1 12740278 12740357 -184455075 - PB1D7 SINE Alu -7 113 34 3 682 908 163 18 18 chr1 12740856 12741025 -184454407 + Lx5 LINE L1 6195 6363 -687 3 682 3230 237 14 0 chr1 12741096 12741724 -184453708 + Lx5 LINE L1 6369 7005 -45 3 682 558 332 154 19 chr1 12742100 12742521 -184452911 - Lx8 LINE L1 -2 7471 6994 3 682 331 311 159 43 chr1 12742531 12742669 -184452763 - RSINE1 SINE B4 -8 157 4 4 682 806 251 108 0 chr1 12742673 12742876 -184452556 - Lx8 LINE L1 -699 6774 6550 3 682 227 241 52 0 chr1 12743853 12743911 -184451521 + tRNA-Ala-GCA tRNA tRNA 13 73 -2 4 682 183 80 0 0 chr1 12743911 12743936 -184451496 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 682 221 125 0 40 chr1 12744711 12744761 -184450671 + A-rich Low_complexity Low_complexity 1 48 0 4 682 345 345 65 35 chr1 12745139 12745340 -184450092 - MIRb SINE MIR -31 237 31 4 682 428 335 107 87 chr1 12745495 12745678 -184449754 - MLT1F LTR MaLR -41 528 357 4 682 240 280 116 96 chr1 12745678 12745824 -184449608 + B1F2 SINE Alu 1 149 0 4 682 531 311 66 4 chr1 12745824 12746021 -184449411 - MLT1F LTR MaLR -213 356 132 4 682 27 23 0 22 chr1 12746449 12746481 -184448951 + AT_rich Low_complexity Low_complexity 1 32 0 4 682 1276 27 0 0 chr1 12746481 12746628 -184448804 - B1_Mm SINE Alu 0 147 1 4 682 27 23 0 22 chr1 12746628 12746640 -184448792 + AT_rich Low_complexity Low_complexity 1 12 0 4 682 847 250 14 34 chr1 12746807 12747014 -184448418 - B3 SINE B2 -13 203 1 4 682 22 35 0 0 chr1 12747878 12747907 -184447525 + AT_rich Low_complexity Low_complexity 1 29 0 4 682 774 183 159 16 chr1 12747915 12748104 -184447328 - B3 SINE B2 0 216 1 4 682 944 17 0 0 chr1 12748284 12748403 -184447029 + B1_Mus1 SINE Alu 18 136 -12 4 682 474 28 27 14 chr1 12748405 12748478 -184446954 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 4 682 200 34 0 33 chr1 12748765 12748795 -184446637 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 4 682 315 307 0 0 chr1 12748823 12748898 -184446534 + ID4_ SINE ID 5 79 -4 4 682 602 220 0 6 chr1 12749376 12749472 -184445960 + polypurine Low_complexity Low_complexity 2 96 0 4 682 1116 133 0 0 chr1 12749472 12749652 -184445780 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 4 682 602 220 0 6 chr1 12749652 12749715 -184445717 + polypurine Low_complexity Low_complexity 97 159 0 4 682 315 0 0 0 chr1 12751755 12751790 -184443642 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 682 193 217 15 77 chr1 12752360 12752425 -184443007 + L2c LINE L2 3324 3384 -3 4 682 824 128 7 15 chr1 12752716 12752851 -184442581 - B1_Mus1 SINE Alu -13 135 2 4 682 756 236 13 71 chr1 12752851 12752940 -184442492 - ID_B1 SINE B4 -13 211 1 4 682 216 163 0 0 chr1 12752941 12752984 -184442448 + CT-rich Low_complexity Low_complexity 3 45 0 4 682 1562 47 11 0 chr1 12752997 12753187 -184442245 - B2_Mm1t SINE B2 0 193 2 4 682 219 125 0 0 chr1 12755162 12755202 -184440230 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 4 682 415 257 9 35 chr1 12755206 12755319 -184440113 - PB1D9 SINE Alu -9 111 2 4 682 315 0 0 0 chr1 12756230 12756265 -184439167 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 682 211 297 51 63 chr1 12756308 12756387 -184439045 - B3A SINE B2 -119 79 2 4 682 281 89 22 0 chr1 12757123 12757168 -184438264 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 682 281 276 26 26 chr1 12757173 12757251 -184438181 + ID2 SINE ID 6 83 0 4 682 329 212 0 66 chr1 12758056 12758147 -184437285 - PB1D10 SINE Alu -1 116 32 4 682 962 250 9 14 chr1 12758694 12758905 -184436527 - B3 SINE B2 -6 210 1 4 682 450 53 0 0 chr1 12762159 12762216 -184433216 + (T)n Simple_repeat Simple_repeat 1 57 0 4 682 1350 65 50 10 chr1 12763160 12763361 -184432071 - L1_Mus3 LINE L1 -4 6634 6426 4 682 437 339 0 0 chr1 12763500 12763630 -184431802 + B1F SINE Alu 15 144 -5 4 682 4741 67 17 22 chr1 12763666 12764305 -184431127 + L1_Mus3 LINE L1 5959 6590 -48 4 682 719 151 6 0 chr1 12764305 12764464 -184430968 + GA-rich Low_complexity Low_complexity 1 160 0 4 682 1274 78 0 6 chr1 12764466 12764647 -184430785 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 682 21 0 0 0 chr1 12767489 12767510 -184427922 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 3552 62 2 4 chr1 12768032 12768482 -184426950 - L1_Mus1 LINE L1 -2 6565 6117 4 682 334 242 6 43 chr1 12768503 12768611 -184426821 + B1F SINE Alu 9 142 -7 4 682 389 316 48 10 chr1 12769231 12769380 -184426052 + B3A SINE B2 65 216 0 4 682 237 65 0 0 chr1 12769478 12769509 -184425923 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 682 719 263 109 8 chr1 12769513 12769751 -184425681 - Lx6 LINE L1 -26 7434 7173 4 682 352 105 26 0 chr1 12770169 12770245 -184425187 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 682 303 290 0 0 chr1 12770247 12770316 -184425116 - ID4 SINE ID -11 72 4 4 682 25 51 0 0 chr1 12770560 12770599 -184424833 + AT_rich Low_complexity Low_complexity 1 39 0 4 682 306 284 29 0 chr1 12770650 12770752 -184424680 - PB1D10 SINE Alu -11 106 2 4 682 707 318 173 58 chr1 12770972 12771690 -184423742 - Charlie1a DNA MER1_type -654 801 2 4 682 251 273 0 0 chr1 12771765 12771820 -184423612 - tRNA-Ala-GCY_ tRNA tRNA -11 64 10 4 682 207 190 34 17 chr1 12772344 12772403 -184423029 + T-rich Low_complexity Low_complexity 4 63 0 4 682 457 308 24 146 chr1 12772563 12772776 -184422656 - B3A SINE B2 -8 187 1 4 682 297 253 200 0 chr1 12773079 12773174 -184422258 + PB1D10 SINE Alu 1 114 -3 4 682 21 0 0 0 chr1 12773890 12773911 -184421521 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 436 277 20 0 chr1 12773917 12774018 -184421414 - RSINE1 SINE B4 -10 155 53 4 682 219 36 0 0 chr1 12774802 12774830 -184420602 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 682 240 35 0 0 chr1 12774830 12774859 -184420573 + (TGG)n Simple_repeat Simple_repeat 1 29 0 4 682 216 189 0 0 chr1 12774871 12774908 -184420524 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 682 207 0 0 0 chr1 12774909 12774932 -184420500 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 682 445 296 14 22 chr1 12777087 12777225 -184418207 + ID_B1 SINE B4 86 222 -2 4 682 198 0 0 0 chr1 12777420 12777442 -184417990 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 4 682 634 246 15 7 chr1 12777442 12777577 -184417855 - B1_Mur2 SINE Alu -11 138 3 4 682 258 29 0 56 chr1 12779592 12779628 -184415804 - L1MB2 LINE L1 -88 6083 6050 4 682 1163 51 0 0 chr1 12779670 12779807 -184415625 - B1_Mus1 SINE Alu -10 138 2 4 682 433 294 27 152 chr1 12779893 12780379 -184415053 - L1MB2 LINE L1 -274 5897 5472 4 682 391 209 163 11 chr1 12781739 12781831 -184413601 + B1_Mur2 SINE Alu 1 106 -43 4 682 214 184 0 0 chr1 12781865 12781903 -184413529 + T-rich Low_complexity Low_complexity 3 40 0 4 682 210 105 0 0 chr1 12782200 12782238 -184413194 + (CAGG)n Simple_repeat Simple_repeat 4 41 0 4 682 648 206 110 0 chr1 12782741 12782896 -184412536 + ORR1D2 LTR MaLR 197 368 -2 4 682 710 244 132 98 chr1 12782901 12783091 -184412341 - MER2 DNA MER2_type -40 305 86 4 682 396 0 0 0 chr1 12783091 12783135 -184412297 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 682 710 244 132 98 chr1 12783135 12783239 -184412193 - MER2 DNA MER2_type -260 85 1 4 682 247 261 160 21 chr1 12783293 12783387 -184412045 - MIRc SINE MIR -68 200 94 4 682 384 280 27 36 chr1 12783459 12783570 -184411862 - PB1D9 SINE Alu -1 119 10 4 682 190 352 80 24 chr1 12784073 12784198 -184411234 + MIRb SINE MIR 80 211 -57 4 682 1167 109 0 0 chr1 12784692 12784866 -184410566 + (TTCTC)n Simple_repeat Simple_repeat 2 175 0 4 682 423 0 0 0 chr1 12784866 12784912 -184410520 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 682 290 217 14 28 chr1 12787204 12787275 -184408157 - MLT1A1 LTR MaLR 0 408 339 4 682 1240 82 64 27 chr1 12787588 12787775 -184407657 + B2_Mm2 SINE B2 2 195 0 4 682 3515 25 0 2 chr1 12788998 12789395 -184406037 + MTA_Mm LTR MaLR 1 396 0 4 682 312 233 31 108 chr1 12789800 12789930 -184405502 - PB1D9 SINE Alu 0 120 1 4 682 240 230 62 47 chr1 12790319 12790383 -184405049 - B1F1 SINE Alu -82 67 3 4 682 234 384 107 0 chr1 12791410 12791522 -184403910 - PB1 SINE Alu -3 124 1 4 682 185 250 30 45 chr1 12792934 12793001 -184402431 - MIR SINE MIR -30 232 167 4 682 549 0 0 0 chr1 12793538 12793599 -184401833 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 4 682 758 195 243 0 chr1 12793613 12793782 -184401650 - B3 SINE B2 -6 210 1 4 682 402 73 61 0 chr1 12793823 12793905 -184401527 + (TTTTG)n Simple_repeat Simple_repeat 4 90 0 4 682 1245 34 14 0 chr1 12793905 12794053 -184401379 - B1_Mur4 SINE Alu 0 150 1 4 682 384 281 18 19 chr1 12794310 12794410 -184401022 + PB1D10 SINE Alu 6 116 -11 4 682 573 123 0 0 chr1 12794410 12794516 -184400916 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 4 682 384 277 0 21 chr1 12794516 12794528 -184400904 + PB1D10 SINE Alu 106 116 -1 4 682 299 316 6 134 chr1 12795970 12795998 -184399434 + B4 SINE B4 58 191 -98 4 682 353 294 48 0 chr1 12795998 12796124 -184399308 + B1F1 SINE Alu 1 132 -17 4 682 405 0 0 0 chr1 12796858 12796903 -184398529 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 682 648 170 149 153 chr1 12800245 12800467 -184394965 + URR1B DNA MER1_type 5 225 0 4 682 265 137 27 27 chr1 12802104 12802179 -184393253 + (CAGAGA)n Simple_repeat Simple_repeat 3 77 0 4 682 349 234 57 114 chr1 12802258 12802398 -184393034 + B3A SINE B2 67 198 0 4 682 203 0 37 0 chr1 12802451 12802478 -184392954 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 682 267 31 0 0 chr1 12802909 12802941 -184392491 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 682 258 56 0 0 chr1 12803651 12803687 -184391745 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 682 187 312 121 30 chr1 12806313 12806445 -184388987 + MIR SINE MIR 99 242 -20 5 682 483 18 0 0 chr1 12806638 12806694 -184388738 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 682 258 359 88 12 chr1 12807750 12807956 -184387476 - MER102c DNA MER1_type 0 331 114 5 682 256 268 27 136 chr1 12808237 12808271 -184387161 + MT2B LTR ERVL 134 151 -450 5 682 666 183 9 0 chr1 12808271 12808386 -184387046 + B1_Mur1 SINE Alu 1 116 -33 5 682 1365 96 37 5 chr1 12808968 12809157 -184386275 - B2_Mm2 SINE B2 0 195 1 5 682 346 125 0 0 chr1 12809158 12809206 -184386226 - tRNA-Leu-CTY tRNA tRNA -34 51 4 5 682 21 0 0 0 chr1 12809777 12809798 -184385634 + AT_rich Low_complexity Low_complexity 1 21 0 5 682 309 26 0 0 chr1 12809961 12809999 -184385433 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 682 615 254 19 72 chr1 12810001 12810209 -184385223 + B3A SINE B2 1 197 -1 5 682 572 221 64 99 chr1 12811100 12811271 -184384161 - RSINE1 SINE B4 0 165 1 5 682 752 174 0 123 chr1 12811650 12811820 -184383612 - B1_Mur4 SINE Alu 0 150 2 5 682 575 171 133 0 chr1 12812736 12812841 -184382591 + PB1D9 SINE Alu 2 120 0 5 682 223 217 22 0 chr1 12812999 12813045 -184382387 + GA-rich Low_complexity Low_complexity 2 48 0 5 682 444 258 27 66 chr1 12813211 12813414 -184382018 + B3A SINE B2 1 189 -6 5 682 1836 201 116 3 chr1 12813504 12813859 -184381573 + Lx5 LINE L1 6655 7049 -1 5 682 3482 30 2 0 chr1 12814594 12814989 -184380443 - MTA_Mm LTR MaLR 0 396 1 5 682 256 220 40 0 chr1 12815323 12815373 -184380059 + MER5A DNA MER1_type 14 65 -124 5 682 208 275 53 80 chr1 12815411 12815486 -184379946 + MER5A DNA MER1_type 113 185 -4 5 682 222 370 0 14 chr1 12815714 12815788 -184379644 - BC1_Mm scRNA scRNA -65 87 15 5 682 226 330 94 28 chr1 12816574 12816680 -184378752 - PB1D10 SINE Alu 0 117 5 5 682 261 0 0 0 chr1 12816722 12816751 -184378681 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 682 185 186 0 85 chr1 12816779 12816826 -184378606 + MIRc SINE MIR 79 121 -147 5 682 192 77 0 0 chr1 12817046 12817072 -184378360 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 5 682 300 27 0 0 chr1 12817391 12817428 -184378004 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 682 249 343 27 18 chr1 12817786 12817896 -184377536 + PB1 SINE Alu 3 113 -14 5 682 405 335 0 32 chr1 12817896 12818039 -184377393 + RSINE1 SINE B4 4 143 -22 5 682 180 0 0 0 chr1 12818039 12818059 -184377373 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 682 405 335 0 32 chr1 12818059 12818072 -184377360 + RSINE1 SINE B4 144 155 -10 5 682 9445 70 2 9 chr1 12818446 12819340 -184376092 + L1Md_F2 LINE L1 4361 5251 -632 5 682 2891 102 72 20 chr1 12819340 12819798 -184375634 - RLTR45 LTR ERVK 0 482 1 5 682 9445 70 2 9 chr1 12819798 12820138 -184375294 + L1Md_F2 LINE L1 5252 5586 -297 5 682 7774 66 5 11 chr1 12820138 12821140 -184374292 + L1Md_F2 LINE L1 5587 6582 0 5 682 1213 61 0 0 chr1 12821500 12821648 -184373784 + B1_Mus1 SINE Alu 1 148 0 5 682 289 266 35 17 chr1 12822609 12822651 -184372781 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 5 682 267 31 0 0 chr1 12822651 12822683 -184372749 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 682 289 266 35 17 chr1 12822683 12822755 -184372677 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 5 682 718 123 15 0 chr1 12822992 12823122 -184372310 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 5 682 347 239 78 19 chr1 12823172 12823276 -184372156 + PB1 SINE Alu 3 107 -13 5 682 234 0 0 0 chr1 12824166 12824192 -184371240 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 682 289 213 58 0 chr1 12824202 12824271 -184371161 - B1F SINE Alu -57 90 10 5 682 228 375 0 0 chr1 12824225 12824297 -184371135 - B4A SINE B4 -152 140 69 5 682 517 274 15 30 chr1 12824288 12824420 -184371012 - B3A SINE B2 -68 130 1 5 682 498 263 12 50 chr1 12824923 12824948 -184370484 - ID_B1 SINE B4 -41 251 144 5 682 854 162 7 0 chr1 12824948 12825084 -184370348 - B1_Mus1 SINE Alu -1 147 11 5 682 498 263 12 50 chr1 12825084 12825097 -184370335 - ID_B1 SINE B4 -41 143 78 5 682 715 269 23 6 chr1 12829027 12829203 -184366229 + B3 SINE B2 11 189 -27 5 682 705 180 0 0 chr1 12831016 12831457 -184363975 + (TG)n Simple_repeat Simple_repeat 1 441 0 5 682 189 0 0 0 chr1 12831612 12831633 -184363799 + (CTGGGG)n Simple_repeat Simple_repeat 4 24 0 5 682 389 270 45 0 chr1 12831955 12832066 -184363366 + Lx8 LINE L1 7160 7275 -198 5 682 204 139 28 65 chr1 12832157 12832265 -184363167 + G-rich Low_complexity Low_complexity 4 107 0 5 682 214 289 0 0 chr1 12832783 12832835 -184362597 + GA-rich Low_complexity Low_complexity 1 52 0 5 682 222 113 94 0 chr1 12833091 12833144 -184362288 + T-rich Low_complexity Low_complexity 2 59 0 5 682 1058 156 0 5 chr1 12833151 12833338 -184362094 - B2_Mm2 SINE B2 -8 187 2 5 682 357 221 39 124 chr1 12833355 12833484 -184361948 - B1F SINE Alu -13 136 19 5 682 252 198 112 43 chr1 12833656 12833772 -184361660 - Lx6 LINE L1 -2 7458 7335 5 682 207 0 0 0 chr1 12834483 12834506 -184360926 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 682 639 39 0 0 chr1 12834506 12834583 -184360849 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 682 525 80 0 0 chr1 12835162 12835237 -184360195 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 682 271 301 47 83 chr1 12835250 12835442 -184359990 - B3 SINE B2 -29 187 3 5 682 489 325 31 8 chr1 12835754 12836011 -184359421 - Charlie7 DNA MER1_type -445 2167 1905 5 682 471 35 0 0 chr1 12836813 12836870 -184358562 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 682 877 264 81 29 chr1 12837007 12837280 -184358152 + B4 SINE B4 6 292 0 5 682 641 256 68 40 chr1 12837287 12837612 -184357820 + RLTR15 LTR ERVK 8 341 -18 5 682 237 246 0 15 chr1 12837840 12837906 -184357526 - Charlie7a DNA MER1_type -162 110 46 5 682 520 265 27 85 chr1 12839448 12839654 -184355778 - B3A SINE B2 -12 204 7 5 682 537 295 202 8 chr1 12839768 12840011 -184355421 - ORR1D2 LTR MaLR -57 313 24 5 682 497 16 0 16 chr1 12840549 12840612 -184354820 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 682 670 295 10 35 chr1 12842833 12843033 -184352399 - ID_B1 SINE B4 -28 196 2 5 682 442 299 92 53 chr1 12843180 12843463 -184351969 - L1MC4 LINE L1 -162 7880 7587 5 682 1099 61 0 0 chr1 12843584 12843715 -184351717 + B1_Mus2 SINE Alu 3 133 -14 5 682 269 19 55 36 chr1 12843716 12843771 -184351661 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 682 288 325 127 18 chr1 12844008 12844340 -184351092 - L1MC4 LINE L1 -847 7195 6828 5 682 351 0 0 0 chr1 12844351 12844390 -184351042 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 682 847 153 6 30 chr1 12844781 12844949 -184350483 - RLTR11B LTR ERVK -13 440 277 5 85 745 202 78 132 chr1 12844993 12845289 -184350143 - RLTR11B LTR ERVK -173 280 1 5 683 652 298 89 98 chr1 12845482 12845932 -184349500 - MLT1D LTR MaLR -53 452 7 5 683 801 168 7 20 chr1 12846484 12846630 -184348802 + B1_Mur4 SINE Alu 1 144 -6 5 683 620 111 10 0 chr1 12846677 12846776 -184348656 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 683 340 332 36 41 chr1 12846944 12847164 -184348268 - MER21-int LTR ERV1 -1232 2959 2741 5 683 358 238 0 0 chr1 12847284 12847368 -184348064 - L1MC4 LINE L1 -4556 1659 1576 5 683 201 206 31 31 chr1 12847702 12847767 -184347665 + CT-rich Low_complexity Low_complexity 6 70 0 5 683 423 278 139 0 chr1 12848551 12848702 -184346730 - ID_B1 SINE B4 -52 172 1 5 683 358 302 9 28 chr1 12852583 12852692 -184342740 + ID_B1 SINE B4 87 193 -31 5 683 217 0 61 0 chr1 12853749 12853782 -184341650 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 5 683 3727 79 2 0 chr1 12853808 12854290 -184341142 - L1_Mus1 LINE L1 0 6567 6085 5 683 299 294 151 14 chr1 12855512 12855789 -184339643 + L1MA5 LINE L1 5838 6156 -144 5 683 216 0 0 0 chr1 12856912 12856936 -184338496 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 683 451 70 14 14 chr1 12857956 12858029 -184337403 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 683 350 275 168 0 chr1 12862899 12863030 -184332402 + B4A SINE B4 27 179 -113 5 683 532 227 27 0 chr1 12863061 12863171 -184332261 + B1_Mur1 SINE Alu 1 113 -36 5 683 415 290 40 76 chr1 12863171 12863257 -184332175 + B4A SINE B4 86 274 -18 5 683 315 0 0 0 chr1 12863280 12863315 -184332117 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 683 325 228 173 35 chr1 12864553 12864726 -184330706 + B3A SINE B2 1 197 -1 5 683 207 0 0 0 chr1 12865150 12865173 -184330259 + (CCCTAA)n Simple_repeat Simple_repeat 1 23 0 5 683 279 36 0 83 chr1 12865406 12865466 -184329966 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 683 286 231 21 21 chr1 12865709 12865802 -184329630 + (CGGG)n Simple_repeat Simple_repeat 3 95 0 5 683 1885 172 129 3 chr1 12866870 12867242 -184328190 + MTC LTR MaLR 3 421 0 5 683 217 284 69 0 chr1 12867865 12867967 -184327465 + (ATGTG)n Simple_repeat Simple_repeat 4 112 0 5 683 756 118 7 14 chr1 12868575 12868713 -184326719 + (TTTTC)n Simple_repeat Simple_repeat 3 139 0 5 683 807 206 114 0 chr1 12868738 12868922 -184326510 - B3 SINE B2 -11 205 1 5 683 201 301 71 51 chr1 12869780 12869878 -184325554 + MIRm SINE MIR 169 268 -8 5 683 357 24 0 0 chr1 12871535 12871577 -184323855 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 683 386 237 70 0 chr1 12872010 12872124 -184323308 - L1MA6 LINE L1 -1 6299 6178 5 683 314 282 131 87 chr1 12873077 12873283 -184322149 + MER20 DNA MER1_type 2 216 -3 5 683 968 197 178 49 chr1 12873915 12874050 -184321382 - Lx7 LINE L1 -2 7694 7546 5 683 297 51 0 0 chr1 12874050 12874089 -184321343 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 5 683 968 197 178 49 chr1 12874089 12874279 -184321153 - Lx7 LINE L1 -151 7545 7328 5 683 216 0 0 0 chr1 12874672 12874696 -184320736 + (TGG)n Simple_repeat Simple_repeat 1 24 0 6 683 186 43 0 0 chr1 12874705 12874728 -184320704 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 683 386 229 121 16 chr1 12874728 12874843 -184320589 - ID_B1 SINE B4 -13 211 83 6 683 22 35 0 0 chr1 12875071 12875100 -184320332 + AT_rich Low_complexity Low_complexity 1 29 0 6 683 733 168 14 14 chr1 12876071 12876210 -184319222 + B1_Mur4 SINE Alu 7 145 -5 6 683 739 191 50 0 chr1 12876625 12876766 -184318666 - B1_Mus1 SINE Alu 0 148 1 6 683 333 149 0 0 chr1 12877377 12877444 -184317988 + (A)n Simple_repeat Simple_repeat 1 67 0 6 683 21 36 0 0 chr1 12878318 12878346 -184317086 + AT_rich Low_complexity Low_complexity 1 28 0 6 683 1939 162 75 6 chr1 12878491 12878850 -184316582 + ORR1C2 LTR MaLR 1 384 0 6 683 775 231 87 5 chr1 12878850 12879068 -184316364 + ORR1C2-int LTR MaLR 1 236 -1134 6 683 938 244 141 66 chr1 12879079 12879546 -184315886 - RLTR20B2 LTR ERVK -27 550 20 6 683 4600 212 41 45 chr1 12879534 12880684 -184314748 + ORR1C2-int LTR MaLR 212 1356 -14 6 683 1909 181 52 3 chr1 12880692 12881058 -184314374 + ORR1C2 LTR MaLR 1 384 0 6 683 447 148 0 0 chr1 12881206 12881294 -184314138 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 6 683 570 224 16 23 chr1 12881826 12881954 -184313478 + B1F2 SINE Alu 16 142 -7 6 683 4241 259 70 42 chr1 12881992 12882014 -184313418 + Lx7 LINE L1 5963 5994 -1702 6 683 1277 78 6 0 chr1 12882014 12882193 -184313239 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 6 683 4241 259 70 42 chr1 12882193 12882808 -184312624 + Lx7 LINE L1 5995 6632 -1064 6 683 666 202 25 65 chr1 12882808 12883009 -184312423 + B2_Mm2 SINE B2 2 194 -1 6 683 4241 259 70 42 chr1 12883009 12883731 -184311701 + Lx7 LINE L1 6633 7362 -334 6 683 558 354 43 4 chr1 12883999 12884229 -184311203 - B4 SINE B4 -4 288 50 6 683 519 330 74 21 chr1 12884861 12885275 -184310157 + L1M5 LINE L1 5225 5665 -575 6 683 456 161 0 0 chr1 12885370 12885451 -184309981 + (TTA)n Simple_repeat Simple_repeat 1 81 0 6 683 276 253 25 12 chr1 12885716 12885796 -184309636 + MLT1A0 LTR MaLR 1 81 -293 6 683 23076 112 35 8 chr1 12885893 12891769 -184303663 + L1_Mus1 LINE L1 477 6567 0 6 683 9837 136 6 36 chr1 12891769 12892613 -184302819 + Lx LINE L1 4312 5111 -772 6 683 4110 52 2 4 chr1 12892613 12893097 -184302335 + L1Md_F2 LINE L1 6100 6582 0 6 683 9837 118 36 18 chr1 12893097 12894608 -184300824 + Lx LINE L1 5112 6654 0 6 683 556 288 43 12 chr1 12894644 12894806 -184300626 + MLT1A0 LTR MaLR 196 362 -3 6 683 748 267 36 20 chr1 12894891 12895086 -184300346 + B3A SINE B2 1 198 0 6 683 974 134 0 21 chr1 12895114 12895259 -184300173 + B1_Mus1 SINE Alu 1 142 -6 6 683 234 156 0 0 chr1 12895259 12895304 -184300128 + GA-rich Low_complexity Low_complexity 2 46 0 6 683 1349 238 128 9 chr1 12896759 12897086 -184298346 + ORR1D2 LTR MaLR 5 370 0 6 683 434 244 6 0 chr1 12897684 12897856 -184297576 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 683 212 0 0 35 chr1 12898448 12898477 -184296955 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 6 683 772 274 12 0 chr1 12899154 12899322 -184296110 - B3 SINE B2 -46 170 1 6 683 740 288 138 47 chr1 12899463 12900338 -184295094 - L1MB7 LINE L1 -357 5827 4865 6 683 809 168 7 0 chr1 12900566 12900703 -184294729 + URR1B DNA MER1_type 88 225 0 6 683 482 281 8 30 chr1 12900703 12900835 -184294597 + B4A SINE B4 164 292 0 6 683 359 248 9 65 chr1 12900886 12900974 -184294458 - L1MB7 LINE L1 -1290 4856 4772 6 683 3351 29 45 0 chr1 12900974 12901353 -184294079 + MTA_Mm LTR MaLR 1 396 0 6 683 359 248 9 65 chr1 12901353 12901372 -184294060 - L1MB7 LINE L1 -1375 4771 4755 6 683 355 240 55 48 chr1 12901369 12901529 -184293903 - L1MB7 LINE L1 -1536 4604 4450 6 683 486 242 127 0 chr1 12901530 12901695 -184293737 - L1MA8 LINE L1 -23 6268 6083 6 683 225 300 33 8 chr1 12901752 12901873 -184293559 - L1MB7 LINE L1 -1663 4483 4360 6 683 290 312 15 45 chr1 12901885 12902019 -184293413 - L1MB7 LINE L1 -1840 4306 4177 6 683 270 353 136 28 chr1 12902312 12902598 -184292834 - L2a LINE L2 -20 3406 3090 6 683 782 158 6 22 chr1 12903065 12903246 -184292186 + CT-rich Low_complexity Low_complexity 2 179 0 6 683 219 204 0 0 chr1 12903237 12903286 -184292146 + T-rich Low_complexity Low_complexity 4 52 0 6 683 215 262 12 12 chr1 12903398 12903479 -184291953 + (TTTA)n Simple_repeat Simple_repeat 1 81 0 6 683 1106 172 0 65 chr1 12903483 12903700 -184291732 - B3 SINE B2 -13 203 1 6 683 232 378 72 0 chr1 12903807 12903918 -184291514 - Cheshire DNA MER1_type -2136 284 166 6 683 825 169 0 7 chr1 12904092 12904229 -184291203 - B1_Mur3 SINE Alu -5 144 9 6 683 308 219 42 174 chr1 12904115 12904259 -184291173 - MT2B LTR ERVL -323 278 154 6 683 275 302 30 30 chr1 12904587 12904686 -184290746 - PB1D10 SINE Alu -18 99 1 6 683 4130 192 123 11 chr1 12906054 12906926 -184288506 + Lx9 LINE L1 6595 7552 -92 6 683 503 43 14 0 chr1 12906926 12906996 -184288436 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 683 4130 192 123 11 chr1 12906996 12907066 -184288366 + Lx9 LINE L1 7553 7643 -1 6 683 1349 111 26 0 chr1 12907281 12907470 -184287962 + B2_Mm2 SINE B2 2 195 0 6 683 1059 270 101 4 chr1 12907938 12908274 -184287158 - MTE2b LTR MaLR -17 362 4 6 683 230 240 99 0 chr1 12908299 12908380 -184287052 - PB1 SINE Alu -5 122 19 6 683 266 273 17 6 chr1 12908439 12908513 -184286919 + ID4_ SINE ID 8 80 -3 6 683 660 207 104 44 chr1 12908560 12908742 -184286690 + B2_Mm2 SINE B2 3 195 0 6 683 291 307 48 19 chr1 12909589 12909692 -184285740 + PB1D7 SINE Alu 10 115 -5 6 683 912 178 7 0 chr1 12911475 12911610 -184283822 - B1_Mur4 SINE Alu -10 140 5 6 683 403 309 14 122 chr1 12911898 12911928 -184283504 - B2_Mm2 SINE B2 -3 192 167 6 683 213 121 0 0 chr1 12911928 12911961 -184283471 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 683 318 50 0 0 chr1 12911961 12912001 -184283431 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 683 414 0 0 0 chr1 12912001 12912046 -184283386 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 683 727 279 6 23 chr1 12912046 12912227 -184283205 - B3A SINE B2 -20 178 2 6 683 269 250 160 0 chr1 12912536 12912636 -184282796 + L1MC4 LINE L1 5706 5821 -303 6 683 396 221 197 48 chr1 12913464 12913611 -184281821 - B3A SINE B2 -24 174 6 6 683 249 83 0 0 chr1 12913712 12913748 -184281684 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 683 480 298 55 74 chr1 12913947 12914120 -184281312 + L1MC4 LINE L1 6444 6605 -1437 6 683 548 103 18 18 chr1 12914120 12914229 -184281203 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 6 683 480 298 55 74 chr1 12914229 12914490 -184280942 + L1MC4 LINE L1 6606 6870 -1172 6 683 309 266 38 0 chr1 12914599 12914678 -184280754 - MER82 DNA MER2_type -4 649 568 6 683 227 304 68 10 chr1 12914750 12914853 -184280579 - MER82 DNA MER2_type -196 457 349 6 683 304 339 34 34 chr1 12914856 12914975 -184280457 + PB1D10 SINE Alu 4 122 -27 6 683 318 324 173 28 chr1 12914982 12915230 -184280202 - MER82 DNA MER2_type -312 341 58 6 683 661 284 181 25 chr1 12915352 12915793 -184279639 + L1MC4 LINE L1 7320 7829 -213 6 683 1187 68 0 27 chr1 12915963 12916113 -184279319 + B1_Mus2 SINE Alu 2 147 0 6 683 3381 39 15 5 chr1 12916317 12916709 -184278723 - MTA_Mm LTR MaLR 0 396 1 6 683 8706 63 15 21 chr1 12916709 12916945 -184278487 - MTA_Mm-int LTR MaLR 0 1098 865 6 683 1182 69 21 0 chr1 12916945 12917089 -184278343 + B1_Mus1 SINE Alu 2 148 0 6 683 8706 63 15 21 chr1 12917089 12917956 -184277476 - MTA_Mm-int LTR MaLR -234 864 1 6 683 3561 35 0 5 chr1 12917956 12918354 -184277078 - MTA_Mm LTR MaLR 0 396 1 6 683 698 194 65 0 chr1 12918584 12918708 -184276724 + B1_Mur1 SINE Alu 2 133 -16 6 683 270 275 76 76 chr1 12920314 12920432 -184275000 + MER74B LTR ERVL 396 513 -109 6 683 2317 116 18 60 chr1 12920898 12921282 -184274150 + RLTR9A LTR ERVK 1 368 0 6 683 278 194 15 0 chr1 12921722 12921789 -184273643 + (CACCAT)n Simple_repeat Simple_repeat 4 71 0 6 683 375 283 32 48 chr1 12922351 12922477 -184272955 + MTEa LTR MaLR 3 126 -253 6 683 396 333 62 36 chr1 12922646 12922914 -184272518 + MER2 DNA MER2_type 1 287 -58 6 683 236 281 89 114 chr1 12922965 12923202 -184272230 - L2a LINE L2 -255 3171 2941 6 683 360 0 0 0 chr1 12923551 12923591 -184271841 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 683 327 313 0 0 chr1 12923810 12923877 -184271555 - ID4 SINE ID 0 83 17 6 683 339 273 61 14 chr1 12923984 12924121 -184271311 - B4A SINE B4 -144 148 1 6 683 492 244 32 16 chr1 12924683 12924808 -184270624 + PB1 SINE Alu 1 127 0 6 683 469 305 55 0 chr1 12925318 12925446 -184269986 + B1F1 SINE Alu 2 136 -13 6 683 426 20 0 0 chr1 12925628 12925679 -184269753 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 683 243 0 0 0 chr1 12925820 12925847 -184269585 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 683 847 255 14 19 chr1 12925938 12926150 -184269282 + B3 SINE B2 1 211 -5 6 683 797 267 15 25 chr1 12926408 12926608 -184268824 + B3A SINE B2 1 198 0 6 683 461 252 23 47 chr1 12927842 12927971 -184267461 - B1_Mur1 SINE Alu -7 142 17 6 683 249 313 100 10 chr1 12928219 12928319 -184267113 - MER5C1 DNA MER1_type 0 263 155 6 683 442 282 92 0 chr1 12929614 12929745 -184265687 - ID_B1 SINE B4 0 224 82 6 683 497 167 167 0 chr1 12929816 12929912 -184265520 - B1_Mur4 SINE Alu -8 142 31 6 683 564 259 22 7 chr1 12930622 12930758 -184264674 + MTD LTR MaLR 53 190 -229 6 683 680 211 7 50 chr1 12931042 12931182 -184264250 - RSINE1 SINE B4 -29 136 3 6 683 223 338 154 0 chr1 12931545 12931681 -184263751 + MIRb SINE MIR 103 259 -9 6 683 520 219 42 8 chr1 12931930 12932050 -184263382 + B1F1 SINE Alu 6 129 -20 6 683 1564 271 48 3 chr1 12932980 12933372 -184262060 + MTD LTR MaLR 10 419 0 6 683 279 288 55 46 chr1 12933629 12933738 -184261694 - MLT1D LTR MaLR -143 362 253 6 683 390 282 30 22 chr1 12933802 12933936 -184261496 - MLT1D LTR MaLR -368 137 3 6 683 190 264 74 19 chr1 12934385 12934439 -184260993 + MER5B DNA MER1_type 44 100 -78 6 683 245 280 96 39 chr1 12935156 12935260 -184260172 - PB1D10 SINE Alu -7 110 1 6 683 2375 69 3 0 chr1 12936764 12937052 -184258380 - L1_Mus1 LINE L1 0 6567 6279 6 683 619 229 35 23 chr1 12937975 12938149 -184257283 + Lx6 LINE L1 7207 7382 -78 6 683 495 0 0 0 chr1 12938149 12938204 -184257228 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 683 2723 140 0 58 chr1 12938226 12938690 -184256742 + RMER1A Other Other 539 975 -55 6 683 183 196 0 0 chr1 12938818 12938849 -184256583 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6 683 336 24 0 0 chr1 12938849 12938890 -184256542 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 683 183 196 0 0 chr1 12938890 12938909 -184256523 + (CATATA)n Simple_repeat Simple_repeat 3 21 0 6 683 560 305 70 52 chr1 12938911 12939198 -184256234 + B4 SINE B4 1 292 0 7 683 406 343 39 15 chr1 12939259 12939463 -184255969 + L1M5 LINE L1 4429 4637 -1509 7 683 268 301 36 36 chr1 12939544 12939682 -184255750 + L1MD LINE L1 4789 4926 -1220 7 683 244 226 16 0 chr1 12939732 12939794 -184255638 + L1MD LINE L1 5323 5385 -794 7 683 722 231 155 34 chr1 12939825 12940138 -184255294 - ORR1D2 LTR MaLR 0 370 1 7 683 355 286 143 27 chr1 12940139 12940369 -184255063 + L1MD LINE L1 5425 5691 -549 7 683 1280 28 7 0 chr1 12940541 12940686 -184254746 + B1_Mus1 SINE Alu 2 147 -1 7 683 1032 206 21 5 chr1 12941005 12941195 -184254237 - B3 SINE B2 -12 204 12 7 683 230 241 19 0 chr1 12941415 12941469 -184253963 - RMER5 LTR ERV1 -8 526 472 7 683 867 264 51 119 chr1 12941487 12941900 -184253532 - RMER5 LTR ERV1 -149 385 1 7 683 238 321 138 35 chr1 12942809 12942896 -184252536 + Cheshire DNA MER1_type 178 273 -2147 7 683 627 250 7 29 chr1 12943149 12943289 -184252143 - B1_Mur1 SINE Alu -8 141 5 7 683 646 231 34 13 chr1 12943768 12943917 -184251515 + ID_B1 SINE B4 6 157 -67 7 683 210 224 121 0 chr1 12944827 12944885 -184250547 + ID SINE ID 3 67 -157 7 683 2018 141 107 3 chr1 12945631 12945986 -184249446 + ORR1B1 LTR MaLR 3 394 0 7 683 225 336 117 0 chr1 12946724 12946861 -184248571 + L1ME1 LINE L1 5951 6103 -76 7 683 881 241 274 3 chr1 12946942 12947238 -184248194 + MTEb LTR MaLR 1 376 -3 7 683 1749 289 70 18 chr1 12947244 12947860 -184247572 + MTEb-int LTR MaLR 4 651 -929 7 683 564 15 0 0 chr1 12947865 12947930 -184247502 + (TTC)n Simple_repeat Simple_repeat 3 67 0 7 683 405 0 0 0 chr1 12947930 12947974 -184247458 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 683 991 97 0 7 chr1 12947974 12948109 -184247323 - B1_Mm SINE Alu -9 138 5 7 683 922 80 7 7 chr1 12948111 12948249 -184247183 + (TTC)n Simple_repeat Simple_repeat 2 139 0 7 683 7812 81 2 0 chr1 12948249 12949817 -184245615 - L1_Mus2 LINE L1 -7 6559 4989 7 683 210 71 0 0 chr1 12949818 12949846 -184245586 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 7 683 957 117 0 7 chr1 12949846 12949984 -184245448 - B1_Mus1 SINE Alu -11 137 1 7 683 295 271 0 86 chr1 12949985 12950078 -184245354 + MTEb-int LTR MaLR 649 733 -847 7 683 1969 267 103 26 chr1 12950096 12950784 -184244648 + MTEb-int LTR MaLR 826 1566 -14 7 683 865 237 21 5 chr1 12950949 12951140 -184244292 - B3 SINE B2 -22 194 1 7 683 1067 256 159 27 chr1 12951153 12951486 -184243946 + MTEa LTR MaLR 3 379 0 7 683 335 343 50 0 chr1 12951695 12951794 -184243638 - RSINE1 SINE B4 0 165 62 7 683 381 58 0 0 chr1 12951828 12951880 -184243552 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 683 700 118 0 0 chr1 12952767 12952877 -184242555 + B1_Mur2 SINE Alu 40 149 0 7 683 576 106 0 0 chr1 12953234 12953319 -184242113 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 7 683 1035 57 11 54 chr1 12953342 12953527 -184241905 + (GGGAA)n Simple_repeat Simple_repeat 1 177 0 7 683 357 82 0 0 chr1 12953527 12953576 -184241856 + (GGAGA)n Simple_repeat Simple_repeat 3 51 0 7 683 411 286 31 8 chr1 12953588 12953715 -184241717 + RSINE1 SINE B4 7 136 -29 7 683 655 293 99 0 chr1 12953854 12954076 -184241356 + L1M2 LINE L1 5513 5756 -535 7 683 277 281 55 82 chr1 12954223 12954405 -184241027 - ORR1E LTR MaLR -162 197 21 7 683 287 273 0 33 chr1 12954528 12954619 -184240813 - MER46C DNA MER2_type 0 338 251 7 683 1111 254 4 4 chr1 12954610 12954871 -184240561 + MTE-int LTR MaLR 141 401 -1179 7 683 395 19 0 19 chr1 12955563 12955616 -184239816 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 7 683 4708 257 55 48 chr1 12955632 12957137 -184238295 + Lx9 LINE L1 6127 7640 -4 7 683 642 82 0 0 chr1 12957389 12957487 -184237945 + (TG)n Simple_repeat Simple_repeat 2 99 0 7 683 455 176 8 143 chr1 12958138 12958257 -184237175 + ID_B1 SINE B4 105 207 -17 7 683 904 133 71 60 chr1 12959056 12959240 -184236192 + B2_Mm2 SINE B2 1 186 -9 7 683 333 0 0 0 chr1 12960381 12960418 -184235014 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 683 947 266 66 0 chr1 12960977 12961233 -184234199 + MTEa LTR MaLR 84 356 -23 7 683 691 320 47 39 chr1 12962064 12962318 -184233114 + B4 SINE B4 16 271 -21 7 683 1362 166 29 102 chr1 12962321 12962664 -184232768 + ORR1B1 LTR MaLR 77 394 0 7 683 723 122 35 0 chr1 12962736 12962908 -184232524 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 7 683 243 0 0 0 chr1 12962908 12962935 -184232497 + (CATA)n Simple_repeat Simple_repeat 3 29 0 7 683 1091 38 25 0 chr1 12962936 12963093 -184232339 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 7 683 481 270 186 30 chr1 12963893 12964130 -184231302 + B4A SINE B4 1 274 -18 7 683 396 0 0 0 chr1 12964176 12964220 -184231212 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 683 910 223 11 0 chr1 12964701 12964889 -184230543 + ID_B1 SINE B4 3 192 -32 7 683 645 147 7 72 chr1 12964884 12965023 -184230409 + ORR1D1 LTR MaLR 57 186 -188 7 683 237 216 0 0 chr1 12965026 12965114 -184230318 + CT-rich Low_complexity Low_complexity 1 88 0 7 683 546 253 73 26 chr1 12965114 12965132 -184230300 + ORR1D1 LTR MaLR 158 175 -199 7 683 198 0 0 0 chr1 12965132 12965154 -184230278 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 683 342 0 0 0 chr1 12965154 12965191 -184230241 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 683 546 253 73 26 chr1 12965191 12965362 -184230070 + ORR1D1 LTR MaLR 176 356 -18 7 683 638 157 0 155 chr1 12965602 12965776 -184229656 - B1_Mus1 SINE Alu 0 148 2 7 683 431 241 56 0 chr1 12966761 12966869 -184228563 - PB1D10 SINE Alu -1 116 3 7 683 818 35 16 60 chr1 12968115 12968297 -184227135 + (GTTTG)n Simple_repeat Simple_repeat 2 175 0 7 683 511 250 23 23 chr1 12969064 12969195 -184226237 - RSINE1 SINE B4 -32 133 3 7 683 181 286 65 0 chr1 12969483 12969560 -184225872 - MIRm SINE MIR -114 162 81 7 683 402 297 94 36 chr1 12970123 12970315 -184225117 - B4 SINE B4 -88 204 2 7 683 353 39 20 0 chr1 12972049 12972100 -184223332 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 683 428 157 0 0 chr1 12972224 12972294 -184223138 + B3A SINE B2 25 94 -104 7 683 189 175 0 0 chr1 12972363 12972403 -184223029 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 683 309 253 31 10 chr1 12972458 12972554 -184222878 + Lx7 LINE L1 5913 6010 -1686 7 683 1138 83 12 0 chr1 12972573 12972741 -184222691 + B2_Mm1t SINE B2 2 171 -22 7 683 433 97 310 26 chr1 12972792 12972908 -184222524 + B2_Mm2 SINE B2 47 195 0 7 683 359 249 104 109 chr1 12972915 12973145 -184222287 + Lx8 LINE L1 6034 6262 -1211 7 683 456 19 0 0 chr1 12973157 12973210 -184222222 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 7 683 463 303 45 63 chr1 12973563 12973785 -184221647 - MER20 DNA MER1_type -1 218 1 7 683 1329 25 0 0 chr1 12974142 12974299 -184221133 + (TCC)n Simple_repeat Simple_repeat 1 157 0 7 683 248 296 52 0 chr1 12974598 12974713 -184220719 - L1M3 LINE L1 -347 5836 5716 7 683 382 185 65 0 chr1 12974861 12974953 -184220479 + PB1D10 SINE Alu 20 117 0 7 684 466 277 131 0 chr1 12976550 12976680 -184218752 - RSINE1 SINE B4 -17 148 2 7 684 441 0 0 0 chr1 12976761 12976810 -184218622 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 684 516 271 28 28 chr1 12977396 12977540 -184217892 + B1F SINE Alu 4 147 -2 7 684 240 301 27 0 chr1 12977939 12978012 -184217420 - ID4 SINE ID -7 76 2 7 684 682 223 7 20 chr1 12978182 12978333 -184217099 - B1F SINE Alu 0 149 1 7 684 555 43 0 0 chr1 12978598 12978668 -184216764 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 684 234 128 0 0 chr1 12978697 12978736 -184216696 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 684 414 0 0 0 chr1 12981963 12982009 -184213423 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 684 393 22 0 0 chr1 12982492 12982538 -184212894 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 684 1073 95 0 13 chr1 12983568 12983718 -184211714 + B1_Mus1 SINE Alu 1 148 0 7 684 536 139 452 17 chr1 12983792 12984033 -184211399 + RLTR15 LTR ERVK 1 346 -13 7 684 414 0 0 0 chr1 12984048 12984094 -184211338 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 684 1059 99 19 0 chr1 12984094 12984256 -184211176 - B2_Mm2 SINE B2 -17 178 14 7 684 263 259 58 12 chr1 12985664 12985750 -184209682 + MIR SINE MIR 39 128 -134 7 684 593 140 10 0 chr1 12986684 12986784 -184208648 + LTRIS2 LTR ERV1 464 564 0 7 684 425 207 5 32 chr1 12987113 12987298 -184208134 + CT-rich Low_complexity Low_complexity 1 180 0 7 684 334 279 108 8 chr1 12987337 12987467 -184207965 - ID_B1 SINE B4 -1 223 81 7 684 489 263 0 17 chr1 12988526 12988642 -184206790 - B1F1 SINE Alu -18 131 18 7 684 216 85 0 96 chr1 12988767 12988819 -184206613 + A-rich Low_complexity Low_complexity 5 51 0 7 684 696 125 156 0 chr1 12989209 12989337 -184206095 + B1_Mur4 SINE Alu 3 150 0 7 684 1127 56 7 0 chr1 12989339 12989483 -184205949 + B1_Mm SINE Alu 1 145 -2 7 684 441 0 0 0 chr1 12989483 12989532 -184205900 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 7 684 286 250 79 0 chr1 12989820 12989896 -184205536 - B2_Mm2 SINE B2 -113 82 1 7 684 384 291 27 9 chr1 12990271 12990382 -184205050 - PB1D10 SINE Alu -4 113 1 7 684 538 233 19 0 chr1 12990606 12990709 -184204723 + B1_Mur1 SINE Alu 31 135 -14 7 684 1698 26 0 0 chr1 12990791 12990983 -184204449 - B2_Mm1t SINE B2 -1 192 1 7 684 218 310 17 0 chr1 12991199 12991257 -184204175 - ID4 SINE ID 0 83 25 7 684 305 239 54 18 chr1 12991545 12991656 -184203776 + MTEb LTR MaLR 65 179 -200 7 684 1648 36 0 5 chr1 12991664 12991857 -184203575 - B2_Mm1a SINE B2 0 193 2 7 684 579 203 8 0 chr1 12991927 12992055 -184203377 + B3 SINE B2 84 212 -4 8 684 377 160 0 74 chr1 12992102 12992183 -184203249 + MTEb LTR MaLR 302 376 -3 7 684 1106 58 0 14 chr1 12992506 12992647 -184202785 - B1_Mus1 SINE Alu -9 139 1 8 684 561 47 35 0 chr1 12992794 12992879 -184202553 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 684 219 250 0 118 chr1 12992882 12992950 -184202482 - ID4 SINE ID -23 60 1 8 684 757 196 0 20 chr1 12993854 12994000 -184201432 - ID_B1 SINE B4 -8 216 74 8 684 562 250 0 0 chr1 12995876 12995996 -184199436 - RSINE1 SINE B4 -38 127 8 8 684 450 306 63 16 chr1 12996071 12996260 -184199172 + B3 SINE B2 19 216 0 8 684 920 171 193 0 chr1 12996316 12996497 -184198935 - B3 SINE B2 0 216 1 8 684 391 328 36 29 chr1 12996530 12996668 -184198764 + ID_B1 SINE B4 86 224 0 8 684 787 226 50 0 chr1 12996682 12996841 -184198591 + B3 SINE B2 2 168 -48 8 684 355 210 20 0 chr1 12996865 12996965 -184198467 + (TA)n Simple_repeat Simple_repeat 1 102 0 8 684 390 263 96 6 chr1 12997204 12997361 -184198071 + L1MC LINE L1 5593 5763 -2119 8 684 864 70 26 65 chr1 12997422 12997599 -184197833 - L1Md_F2 LINE L1 0 6582 6435 8 684 676 113 209 13 chr1 12997716 12997869 -184197563 - RLTR17 LTR ERVK 0 692 510 8 684 1378 78 0 6 chr1 12998017 12998198 -184197234 + B2_Mm2 SINE B2 2 181 -14 8 684 1152 88 0 0 chr1 12998205 12998352 -184197080 - B1_Mus1 SINE Alu -1 147 1 8 684 27 29 0 0 chr1 12998352 12998386 -184197046 + AT_rich Low_complexity Low_complexity 1 34 0 8 684 258 225 75 69 chr1 12998392 12998582 -184196850 + L1_Rod LINE L1 5164 5419 -884 8 684 1630 302 86 45 chr1 12998580 12999478 -184195954 + Lx8 LINE L1 6191 7125 -348 8 684 517 221 146 46 chr1 12999573 12999766 -184195666 - RMER17C LTR ERVK 0 410 193 8 684 957 116 0 18 chr1 12999766 12999933 -184195499 + (GGGGA)n Simple_repeat Simple_repeat 4 167 0 8 684 517 221 146 46 chr1 12999933 13000000 -184195432 - RMER17C LTR ERVK -218 192 124 8 684 624 163 11 4 chr1 13000003 13000135 -184195297 - RMER17C LTR ERVK -310 100 1 1 684 192 77 0 0 chr1 13000190 13000216 -184195216 + (A)n Simple_repeat Simple_repeat 1 26 0 2 684 418 276 0 58 chr1 13001981 13001998 -184193434 + ID_B1 SINE B4 79 223 -1 3 684 778 175 7 0 chr1 13001998 13002135 -184193297 + B1_Mus2 SINE Alu 9 146 -1 4 684 385 243 26 43 chr1 13002143 13002259 -184193173 + B3A SINE B2 1 114 -84 5 684 195 204 0 0 chr1 13002378 13002427 -184193005 + T-rich Low_complexity Low_complexity 1 49 0 6 684 281 241 237 11 chr1 13002428 13002537 -184192895 - B1_Mus2 SINE Alu -1 116 1 7 684 227 286 14 0 chr1 13002487 13002557 -184192875 - B4A SINE B4 -157 135 65 8 684 567 0 0 0 chr1 13002567 13002630 -184192802 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 9 684 507 158 0 0 chr1 13002631 13002713 -184192719 - B1F2 SINE Alu -13 136 55 1 684 786 301 58 29 chr1 13002769 13003115 -184192317 + ORR1D2 LTR MaLR 15 370 0 1 684 516 237 46 0 chr1 13003344 13003475 -184191957 - B1_Mur2 SINE Alu -8 141 5 1 684 23 0 0 0 chr1 13003721 13003744 -184191688 + AT_rich Low_complexity Low_complexity 1 23 0 1 684 565 175 1 101 chr1 13004122 13004261 -184191171 + B1_Mur4 SINE Alu 25 150 0 1 684 1256 103 5 21 chr1 13004307 13004495 -184190937 - B2_Mm2 SINE B2 -9 186 2 1 684 336 48 0 0 chr1 13004545 13004587 -184190845 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 684 471 326 0 23 chr1 13004824 13004956 -184190476 - RSINE1 SINE B4 -6 159 31 1 684 702 192 31 0 chr1 13005213 13005343 -184190089 + B1_Mur2 SINE Alu 3 136 -13 1 684 712 236 101 37 chr1 13005363 13005394 -184190038 + B3 SINE B2 1 31 -185 1 684 2687 49 15 0 chr1 13005394 13005721 -184189711 + IAPEY3_LTR LTR ERVK 1 332 0 2 684 712 236 101 37 chr1 13005721 13005878 -184189554 + B3 SINE B2 32 201 -15 1 684 2177 111 118 14 chr1 13005953 13006300 -184189132 + RLTR9A2 LTR ERVK 1 383 0 2 684 311 200 15 0 chr1 13006307 13006372 -184189060 - RSINE1 SINE B4 -33 132 67 2 684 1226 85 73 11 chr1 13006660 13006838 -184188594 - B2_Mm2 SINE B2 -6 189 1 2 684 381 195 24 0 chr1 13007059 13007141 -184188291 - ID_B1 SINE B4 0 224 141 2 684 586 271 78 5 chr1 13007473 13007666 -184187766 + MER119 DNA MER1_type 98 304 -279 2 684 270 0 0 0 chr1 13007691 13007721 -184187711 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2 684 1232 110 50 0 chr1 13008080 13008262 -184187170 - B2_Mm2 SINE B2 -4 191 1 2 684 2466 162 25 37 chr1 13008262 13008774 -184186658 - RMER5 LTR ERV1 -16 518 13 2 684 431 278 41 20 chr1 13008873 13009020 -184186412 - MTD LTR MaLR -264 155 6 2 684 1445 245 60 10 chr1 13009400 13009758 -184185674 + MTD LTR MaLR 18 397 -22 3 684 180 0 0 0 chr1 13009758 13009778 -184185654 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 684 1445 245 60 10 chr1 13009778 13009802 -184185630 + MTD LTR MaLR 398 418 -1 3 684 778 175 21 0 chr1 13010065 13010208 -184185224 - B1_Mus2 SINE Alu -1 146 1 3 684 239 224 0 0 chr1 13010212 13010279 -184185153 + MER44D DNA MER2_type 52 118 -587 3 684 350 298 133 9 chr1 13010279 13010384 -184185048 + PB1D9 SINE Alu 1 118 -2 3 684 260 235 163 0 chr1 13010391 13010489 -184184943 + MER44D DNA MER2_type 475 588 -117 3 684 23 33 0 0 chr1 13011421 13011451 -184183981 + AT_rich Low_complexity Low_complexity 1 30 0 3 684 491 260 82 30 chr1 13011468 13011603 -184183829 + B1_Mur1 SINE Alu 2 143 -6 3 684 459 0 0 0 chr1 13012341 13012392 -184183040 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 684 287 309 31 0 chr1 13012694 13012791 -184182641 + PB1D7 SINE Alu 13 112 -8 3 684 609 265 86 32 chr1 13012912 13013099 -184182333 + B3A SINE B2 2 198 0 3 684 378 61 0 0 chr1 13013641 13013690 -184181742 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 684 370 364 99 0 chr1 13013701 13013852 -184181580 + B3A SINE B2 1 166 -32 4 684 617 304 68 5 chr1 13014127 13014332 -184181100 + ID_B1 SINE B4 3 220 -4 4 684 394 261 22 15 chr1 13014687 13014823 -184180609 + B3 SINE B2 75 211 -5 4 684 311 328 103 27 chr1 13014840 13015169 -184180263 + L2 LINE L2 2529 2882 -537 4 684 231 320 79 10 chr1 13015294 13015395 -184180037 - PB1D10 SINE Alu -8 109 2 4 684 697 183 82 113 chr1 13015526 13015960 -184179472 - ORR1C1 LTR MaLR 0 374 13 4 684 1262 36 120 0 chr1 13015960 13016127 -184179305 - B2_Mm2 SINE B2 -7 188 2 4 684 568 220 43 240 chr1 13016127 13016158 -184179274 - ORR1C1 LTR MaLR -339 35 1 4 684 541 276 98 0 chr1 13016166 13016340 -184179092 + B4A SINE B4 102 292 0 4 684 204 125 0 0 chr1 13016420 13016452 -184178980 + (CTG)n Simple_repeat Simple_repeat 2 33 0 4 684 1379 184 99 16 chr1 13016474 13016777 -184178655 + ORR1B2 LTR MaLR 1 328 -39 5 684 1061 174 36 57 chr1 13016783 13017093 -184178339 + RMER1B Other Other 492 832 -234 5 684 450 188 39 16 chr1 13017111 13017214 -184178218 + RMER1B Other Other 903 1034 -32 5 684 366 242 0 0 chr1 13017448 13017514 -184177918 + ID4 SINE ID 3 68 -15 5 684 396 71 0 0 chr1 13017514 13017570 -184177862 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 684 282 132 0 0 chr1 13017569 13017622 -184177810 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 684 225 301 0 27 chr1 13017986 13018061 -184177371 + L1MB3 LINE L1 6062 6134 -49 5 684 234 268 0 0 chr1 13018095 13018151 -184177281 + B3A SINE B2 1 56 -142 5 684 304 250 26 0 chr1 13018316 13018392 -184177040 - B3 SINE B2 -46 170 93 5 684 619 274 0 0 chr1 13018439 13018574 -184176858 + B1F2 SINE Alu 10 144 -5 5 684 1130 88 0 0 chr1 13018606 13018753 -184176679 + B1_Mm SINE Alu 1 147 0 6 684 338 216 11 33 chr1 13018765 13018856 -184176576 + Lx8 LINE L1 7377 7465 -8 6 684 1805 229 112 58 chr1 13018887 13019713 -184175719 + RMER17B LTR ERVK 1 899 -9 6 684 217 272 50 71 chr1 13019942 13019979 -184175453 - ID_B1 SINE B4 -28 196 165 6 684 932 202 18 92 chr1 13019979 13020208 -184175224 - B3 SINE B2 -4 212 1 6 684 217 272 50 71 chr1 13020208 13020269 -184175163 - ID_B1 SINE B4 -60 164 101 6 684 313 211 0 0 chr1 13020405 13020471 -184174961 - B1F SINE Alu -33 87 22 6 684 614 85 0 11 chr1 13020530 13020625 -184174807 + (TTTC)n Simple_repeat Simple_repeat 1 94 0 6 684 180 0 0 0 chr1 13020625 13020645 -184174787 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 6 684 1054 70 35 0 chr1 13020651 13020794 -184174638 - B1_Mus1 SINE Alu 0 148 1 6 684 609 251 117 72 chr1 13020820 13020872 -184174560 + MTEb LTR MaLR 1 52 -327 6 684 1638 47 0 0 chr1 13020872 13021064 -184174368 + B2_Mm1t SINE B2 2 193 0 7 684 609 251 117 72 chr1 13021064 13021371 -184174061 + MTEb LTR MaLR 53 376 -3 6 684 582 196 99 26 chr1 13021424 13021508 -184173924 - RLTR20C LTR ERVK 0 578 489 7 684 339 25 0 0 chr1 13021508 13021548 -184173884 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 684 582 196 99 26 chr1 13021548 13021615 -184173817 - RLTR20C LTR ERVK -90 488 416 7 684 929 187 114 67 chr1 13021607 13021905 -184173527 - RLTR20C LTR ERVK -222 312 1 7 684 1356 245 72 38 chr1 13022235 13022626 -184172806 + Lx6 LINE L1 7030 7433 -27 7 684 737 141 32 13 chr1 13022626 13022784 -184172648 + GA-rich Low_complexity Low_complexity 3 163 0 7 684 976 161 132 35 chr1 13022810 13023067 -184172365 + Lx9 LINE L1 7363 7644 0 7 684 1064 44 73 0 chr1 13023090 13023227 -184172205 - B1_Mus2 SINE Alu 0 147 1 7 684 417 268 16 24 chr1 13023242 13023383 -184172049 + L1MA4 LINE L1 5774 5904 -264 7 684 914 126 91 45 chr1 13024009 13024208 -184171224 + MTC LTR MaLR 4 211 -210 7 684 3248 171 249 10 chr1 13024208 13024877 -184170555 + L1_Mur2 LINE L1 2300 3161 -2716 7 684 3335 29 31 0 chr1 13024877 13025261 -184170171 - MTA_Mm LTR MaLR 0 396 1 8 684 3248 171 249 10 chr1 13025261 13025379 -184170053 + L1_Mur2 LINE L1 3162 3275 -2602 7 684 7952 51 20 1 chr1 13025709 13026697 -184168735 - L1_Mus3 LINE L1 -1 6637 5631 8 684 371 149 0 51 chr1 13026724 13026802 -184168630 + MTC LTR MaLR 340 413 -8 7 684 1616 142 133 2 chr1 13026837 13027157 -184168275 - RMER1B Other Other -145 921 549 8 684 549 251 89 55 chr1 13027229 13027268 -184168164 - B3 SINE B2 -6 210 173 8 684 2579 112 91 12 chr1 13027268 13027673 -184167759 + RLTR9B LTR ERVK 1 437 0 8 684 549 251 89 55 chr1 13027673 13027835 -184167597 - B3 SINE B2 -44 172 2 8 684 386 143 90 13 chr1 13027836 13027914 -184167518 + B1_Mus2 SINE Alu 64 147 0 8 684 1316 120 11 0 chr1 13027922 13028113 -184167319 + B2_Mm1t SINE B2 1 193 0 8 684 699 12 0 0 chr1 13028130 13028210 -184167222 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 8 684 246 256 125 23 chr1 13028217 13028305 -184167127 + MLT1H LTR MaLR 270 366 -183 8 684 599 257 48 32 chr1 13028499 13028688 -184166744 + B3 SINE B2 8 199 -17 8 684 3705 115 169 8 chr1 13028921 13029572 -184165860 - RMER6A LTR ERVK 0 756 1 9 684 198 0 0 0 chr1 13029679 13029701 -184165731 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 9 684 354 167 39 77 chr1 13029730 13029834 -184165598 - B2_Mm2 SINE B2 -94 101 2 9 684 1056 165 6 11 chr1 13029834 13030012 -184165420 - B2_Mm1t SINE B2 -14 179 3 9 684 400 274 86 0 chr1 13030837 13030954 -184164478 + RSINE1 SINE B4 11 137 -28 9 684 1592 42 0 5 chr1 13031025 13031218 -184164214 - B2_Mm1a SINE B2 0 193 2 9 684 1314 231 24 14 chr1 13031222 13031516 -184163916 + Lx6 LINE L1 7138 7434 -26 9 684 1137 95 0 0 chr1 13031524 13031671 -184163761 + B1_Mus2 SINE Alu 1 147 0 9 684 258 32 0 0 chr1 13031679 13031710 -184163722 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 9 684 1466 196 109 40 chr1 13031730 13031799 -184163633 - ORR1D1 LTR MaLR 0 374 305 9 684 1229 28 0 0 chr1 13031799 13031943 -184163489 + B1_Mm SINE Alu 2 145 -2 1 684 528 59 0 0 chr1 13031943 13032011 -184163421 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1 684 1466 196 109 40 chr1 13032011 13032290 -184163142 - ORR1D1 LTR MaLR -70 304 2 9 684 1080 197 0 97 chr1 13032733 13032980 -184162452 - ID_B1 SINE B4 0 224 2 1 684 970 223 49 5 chr1 13033145 13033348 -184162084 + B3 SINE B2 2 213 -3 1 684 393 167 31 72 chr1 13033493 13033590 -184161842 + PB1D10 SINE Alu 18 110 -7 1 684 192 40 0 0 chr1 13033689 13033714 -184161718 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 684 1069 99 0 14 chr1 13033714 13033849 -184161583 - B1_Mus2 SINE Alu -11 136 2 1 684 300 27 0 0 chr1 13033985 13034022 -184161410 + (CCA)n Simple_repeat Simple_repeat 3 39 0 1 684 313 265 12 0 chr1 13034231 13034314 -184161118 - MER53 DNA hAT -17 176 93 1 684 552 241 15 38 chr1 13034386 13034536 -184160896 - B1_Mur1 SINE Alu -1 148 2 1 684 264 59 0 0 chr1 13034808 13034842 -184160590 + (T)n Simple_repeat Simple_repeat 1 34 0 1 684 1228 54 0 0 chr1 13034842 13034989 -184160443 - B1_Mm SINE Alu 0 147 1 1 684 1923 102 104 39 chr1 13035022 13035171 -184160261 - ORR1A2 LTR MaLR 0 327 157 1 684 1167 87 110 0 chr1 13035171 13035344 -184160088 + B2_Mm2 SINE B2 2 193 -2 1 684 1923 102 104 39 chr1 13035344 13035501 -184159931 - ORR1A2 LTR MaLR -171 156 1 1 684 431 244 82 25 chr1 13035587 13035709 -184159723 - B4 SINE B4 -111 181 53 1 684 301 308 0 0 chr1 13035714 13035792 -184159640 + PB1 SINE Alu 40 117 -10 1 684 539 225 19 96 chr1 13035937 13036094 -184159338 + B3 SINE B2 66 210 -6 1 684 375 73 0 0 chr1 13036148 13036203 -184159229 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 684 960 162 0 0 chr1 13036469 13036764 -184158668 + (TG)n Simple_repeat Simple_repeat 1 295 0 1 684 711 194 36 36 chr1 13036765 13036931 -184158501 - B4A SINE B4 0 292 127 1 684 355 261 34 0 chr1 13036936 13037024 -184158408 - PB1D7 SINE Alu -29 91 1 1 684 355 283 11 0 chr1 13037088 13037180 -184158252 + RSINE1 SINE B4 12 104 -61 1 684 24 32 0 0 chr1 13037352 13037383 -184158049 + AT_rich Low_complexity Low_complexity 1 31 0 1 684 310 158 29 26 chr1 13037384 13037476 -184157956 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 684 294 29 0 0 chr1 13037476 13037510 -184157922 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 684 310 243 28 40 chr1 13037510 13037624 -184157808 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 684 538 176 93 53 chr1 13037651 13037801 -184157631 - B3A SINE B2 -16 182 27 1 684 376 260 39 54 chr1 13037801 13037931 -184157501 + B1F SINE Alu 3 130 -19 1 684 241 286 40 20 chr1 13038064 13038084 -184157348 - PB1D10 SINE Alu 0 117 16 1 684 269 231 25 25 chr1 13038084 13038164 -184157268 - ID_B1 SINE B4 -48 176 97 1 684 861 175 169 0 chr1 13038262 13038451 -184156981 + URR1B DNA MER1_type 5 225 0 1 684 3437 35 2 0 chr1 13038949 13039344 -184156088 + MTA_Mm LTR MaLR 1 396 0 1 684 257 281 87 10 chr1 13039379 13039483 -184155949 + PB1D10 SINE Alu 1 112 -5 1 684 216 358 70 39 chr1 13039492 13039620 -184155812 + ID_B1 SINE B4 2 133 -91 1 684 1146 230 109 61 chr1 13040940 13041285 -184154147 + MTD LTR MaLR 8 384 -35 1 684 278 50 25 0 chr1 13041285 13041325 -184154107 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 684 1114 186 0 14 chr1 13041325 13041532 -184153900 - B3 SINE B2 -11 205 2 1 684 1146 230 109 61 chr1 13041532 13041578 -184153854 + MTD LTR MaLR 385 418 -1 1 684 1727 21 0 0 chr1 13041757 13041950 -184153482 + B2_Mm1t SINE B2 1 193 0 1 684 1433 94 0 20 chr1 13041971 13042167 -184153265 + B2_Mm1a SINE B2 1 192 -1 1 684 248 70 0 23 chr1 13042636 13042643 -184152789 + (TTTTTG)n Simple_repeat Simple_repeat 6 12 0 1 684 1041 29 79 29 chr1 13042643 13042783 -184152649 - B1_Mm SINE Alu 0 147 1 1 684 248 70 0 23 chr1 13042783 13042819 -184152613 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 1 684 1101 113 0 0 chr1 13042964 13043132 -184152300 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 1 684 282 206 27 14 chr1 13043347 13043421 -184152011 - MTEa LTR MaLR -11 368 294 1 684 565 171 72 0 chr1 13043433 13043544 -184151888 - B1F2 SINE Alu -8 141 23 1 684 560 324 11 34 chr1 13043591 13043767 -184151665 - MTEa LTR MaLR -169 210 39 1 684 575 208 55 16 chr1 13043776 13043903 -184151529 - B1F SINE Alu -8 141 10 1 684 287 146 0 0 chr1 13043922 13043970 -184151462 - MTEa LTR MaLR -331 48 1 1 684 247 198 20 81 chr1 13044236 13044335 -184151097 + Charlie5 DNA MER1_type 2243 2335 -289 1 684 1767 10 0 0 chr1 13044335 13044527 -184150905 + B2_Mm1a SINE B2 2 193 0 1 684 1197 54 0 0 chr1 13044538 13044685 -184150747 + B1_Mm SINE Alu 1 147 0 1 684 296 324 29 22 chr1 13044730 13044869 -184150563 + B1F2 SINE Alu 2 141 -8 1 684 283 262 7 122 chr1 13044884 13045023 -184150409 + RSINE1 SINE B4 8 130 -35 1 684 336 24 0 0 chr1 13045033 13045074 -184150358 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 684 401 233 34 25 chr1 13045161 13045280 -184150152 + B1F SINE Alu 27 146 -3 1 684 994 108 23 154 chr1 13045286 13045506 -184149926 + B2_Mm1t SINE B2 2 192 -1 1 684 261 286 93 20 chr1 13045516 13045666 -184149766 + Charlie5 DNA MER1_type 2448 2608 -16 1 684 1071 235 15 22 chr1 13046169 13046439 -184148993 + MTD LTR MaLR 18 285 -134 1 684 272 35 33 50 chr1 13046843 13046903 -184148529 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 684 1173 62 0 7 chr1 13046903 13047050 -184148382 - B1_Mm SINE Alu 0 147 2 1 684 471 231 19 0 chr1 13047389 13047549 -184147883 + (CA)n Simple_repeat Simple_repeat 2 164 0 1 684 289 236 101 28 chr1 13047575 13047684 -184147748 - Lx8 LINE L1 -100 7373 7257 1 684 480 243 51 128 chr1 13047712 13047767 -184147665 - RMER2 LTR ERV1 -27 540 488 1 684 1610 122 29 82 chr1 13047767 13048107 -184147325 - RLTRETN_Mm LTR ERVK 0 322 1 1 684 480 243 51 128 chr1 13048107 13048325 -184147107 - RMER2 LTR ERV1 -80 487 288 1 684 286 205 84 0 chr1 13048382 13048465 -184146967 - RMER2 LTR ERV1 -451 116 27 1 684 935 246 157 17 chr1 13048479 13048772 -184146660 - Lx8 LINE L1 -224 7249 6916 1 684 273 268 155 0 chr1 13048895 13048992 -184146440 - ID_B1 SINE B4 -7 217 106 1 684 302 232 122 0 chr1 13049293 13049375 -184146057 + B1_Mur2 SINE Alu 33 124 -25 1 684 391 283 35 9 chr1 13049405 13049519 -184145913 - PB1D10 SINE Alu 0 117 1 1 684 1493 198 84 17 chr1 13049613 13049957 -184145475 - ORR1C1 LTR MaLR -7 371 5 1 684 389 122 0 13 chr1 13050043 13050118 -184145314 + (TCC)n Simple_repeat Simple_repeat 2 75 0 1 684 249 321 12 0 chr1 13050120 13050201 -184145231 - ID_B1 SINE B4 -1 223 142 1 684 841 175 0 34 chr1 13050247 13050395 -184145037 + B1_Mus1 SINE Alu 5 147 -1 1 684 1165 68 0 6 chr1 13050400 13050563 -184144869 + B2_Mm2 SINE B2 2 163 -32 1 684 919 125 0 30 chr1 13050631 13050796 -184144636 - B2_Mm2 SINE B2 -31 164 5 1 684 485 163 0 11 chr1 13050804 13050891 -184144541 - B1_Mus2 SINE Alu -1 146 61 1 684 497 100 0 0 chr1 13050871 13050941 -184144491 - B2_Mm2 SINE B2 -123 72 3 1 684 530 227 0 26 chr1 13051357 13051485 -184143947 + B1F1 SINE Alu 1 125 -25 1 684 621 268 35 40 chr1 13051592 13051790 -184143642 + B3A SINE B2 2 198 0 1 684 298 263 34 42 chr1 13051859 13051978 -184143454 + PB1D9 SINE Alu 3 120 0 1 684 939 142 0 0 chr1 13052711 13052887 -184142545 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 684 780 173 0 0 chr1 13052909 13053088 -184142344 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 684 2468 72 3 0 chr1 13053518 13053837 -184141595 + L1_Mus1 LINE L1 5985 6304 -263 1 684 294 164 0 0 chr1 13053863 13053918 -184141514 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 684 217 278 86 32 chr1 13053956 13054049 -184141383 + MIR SINE MIR 111 208 -54 1 684 4517 128 62 19 chr1 13054134 13054910 -184140522 - RMER17D2 LTR ERVK 0 809 1 1 684 1225 71 100 0 chr1 13055064 13055234 -184140198 + B2_Mm2 SINE B2 1 187 -8 1 684 276 30 0 0 chr1 13055235 13055268 -184140164 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 684 21 36 0 0 chr1 13055329 13055357 -184140075 + AT_rich Low_complexity Low_complexity 1 28 0 1 684 1168 69 0 14 chr1 13056371 13056518 -184138914 + B1_Mm SINE Alu 1 145 -2 1 684 367 314 28 42 chr1 13056541 13056684 -184138748 + ID_B1 SINE B4 84 224 0 1 684 218 341 44 56 chr1 13056761 13056851 -184138581 - PB1D7 SINE Alu -13 107 19 1 684 207 0 0 0 chr1 13056959 13056982 -184138450 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 684 218 214 36 0 chr1 13057002 13057058 -184138374 + GA-rich Low_complexity Low_complexity 6 63 0 1 684 1027 181 269 33 chr1 13057553 13057910 -184137522 + RMER10A LTR ERVL 2 442 0 1 684 314 290 48 29 chr1 13057910 13058009 -184137423 - B1F SINE Alu -26 123 23 1 684 256 95 0 0 chr1 13058367 13058409 -184137023 + B1_Mus2 SINE Alu 105 146 -1 1 684 473 278 71 21 chr1 13058529 13058748 -184136684 + L1MA5A LINE L1 5663 5864 -1194 1 684 483 235 183 18 chr1 13058968 13059137 -184136295 - B3A SINE B2 0 198 2 1 684 497 269 216 31 chr1 13059233 13059359 -184136073 + ORR1D2 LTR MaLR 9 157 -202 1 684 621 0 0 0 chr1 13059359 13059428 -184136004 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 684 583 233 132 30 chr1 13059428 13059597 -184135835 + ORR1D2 LTR MaLR 158 367 -3 1 684 1113 168 61 47 chr1 13059633 13059846 -184135586 + MTC LTR MaLR 157 372 -49 1 684 1546 145 60 44 chr1 13059836 13060166 -184135266 + RMER17C LTR ERVK 16 439 -519 1 684 645 38 0 0 chr1 13060166 13060246 -184135186 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 684 1546 155 73 37 chr1 13060246 13060356 -184135076 + RMER17C LTR ERVK 280 409 -1 1 684 1530 174 41 78 chr1 13060599 13060628 -184134804 - RMER17C LTR ERVK -14 396 369 1 684 1128 75 0 14 chr1 13060628 13060776 -184134656 + B1_Mus1 SINE Alu 2 147 -1 1 684 1530 174 41 78 chr1 13060776 13061157 -184134275 - RMER17C LTR ERVK -42 368 1 1 684 701 231 16 40 chr1 13061258 13061450 -184133982 - RMER17C LTR ERVK -30 380 119 2 684 186 43 0 0 chr1 13061450 13061473 -184133959 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 684 586 247 0 71 chr1 13061473 13061602 -184133830 - RMER17C LTR ERVK -292 118 1 2 684 1257 113 16 0 chr1 13061602 13061788 -184133644 + B2_Mm2 SINE B2 5 193 -2 2 684 469 202 34 0 chr1 13062019 13062108 -184133324 + PB1D7 SINE Alu 27 118 -2 2 684 1095 86 60 0 chr1 13063159 13063310 -184132122 + B2_Mm2 SINE B2 1 160 -35 2 684 216 0 0 0 chr1 13063314 13063338 -184132094 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 684 478 202 0 68 chr1 13064051 13064168 -184131264 + PB1D9 SINE Alu 5 113 -7 2 684 291 71 0 0 chr1 13064519 13064561 -184130871 + (A)n Simple_repeat Simple_repeat 1 42 0 2 684 352 312 99 6 chr1 13065599 13065770 -184129662 + MER2 DNA MER2_type 112 298 -47 2 684 1254 54 0 0 chr1 13065806 13065954 -184129478 + B1_Mus1 SINE Alu 1 148 0 2 684 396 268 79 14 chr1 13066049 13066189 -184129243 - MLT2B1 LTR ERVL -78 489 341 2 684 180 0 0 0 chr1 13066606 13066626 -184128806 + (AGGTG)n Simple_repeat Simple_repeat 2 21 0 2 684 365 330 9 0 chr1 13066669 13066698 -184128734 - ID_B1 SINE B4 0 224 109 2 684 374 267 47 0 chr1 13066698 13066784 -184128648 - B1F1 SINE Alu -32 117 28 2 684 219 191 21 0 chr1 13066808 13066855 -184128577 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 684 284 304 9 18 chr1 13067136 13067250 -184128182 - PB1D7 SINE Alu -7 113 1 2 684 309 109 0 0 chr1 13067260 13067306 -184128126 + (T)n Simple_repeat Simple_repeat 1 46 0 2 684 1165 82 0 0 chr1 13067306 13067453 -184127979 - B1_Mus2 SINE Alu 0 147 1 2 684 1161 76 0 0 chr1 13067778 13067923 -184127509 + B1_Mus2 SINE Alu 3 147 0 2 684 210 71 0 0 chr1 13067926 13067954 -184127478 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 684 346 239 316 9 chr1 13068064 13068178 -184127254 - B1F2 SINE Alu 0 149 1 2 684 740 200 200 0 chr1 13068819 13068891 -184126541 + B3 SINE B2 1 85 -131 2 684 225 0 0 0 chr1 13068891 13068916 -184126516 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 684 740 200 200 0 chr1 13068916 13069023 -184126409 + B3 SINE B2 86 215 -1 2 684 1236 41 0 0 chr1 13069042 13069180 -184126252 + B1_Mm SINE Alu 1 138 -9 2 684 228 35 0 0 chr1 13069180 13069209 -184126223 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 2 684 346 244 24 12 chr1 13069272 13069355 -184126077 - PB1D10 SINE Alu -11 106 23 2 684 1131 50 7 0 chr1 13069682 13069822 -184125610 + B2_Mm2 SINE B2 9 149 -46 2 684 306 176 147 0 chr1 13069877 13069945 -184125487 - B1_Mur1 SINE Alu -38 111 34 2 684 322 193 114 0 chr1 13070520 13070608 -184124824 + MER2 DNA MER2_type 127 224 -121 2 684 353 279 19 91 chr1 13070660 13070681 -184124751 + ID_B1 SINE B4 66 208 -16 2 684 737 177 0 23 chr1 13070681 13070814 -184124618 + B1_Mus1 SINE Alu 3 132 -16 2 684 211 304 0 0 chr1 13071105 13071151 -184124281 - RSINE1 SINE B4 -86 79 34 2 684 298 195 171 0 chr1 13071165 13071247 -184124185 - PB1D10 SINE Alu -1 116 21 2 684 182 207 17 0 chr1 13071289 13071347 -184124085 + G-rich Low_complexity Low_complexity 4 62 0 2 684 244 236 0 68 chr1 13071932 13071991 -184123441 + PB1D10 SINE Alu 63 117 0 2 684 1138 42 28 7 chr1 13072158 13072302 -184123130 + B1_Mm SINE Alu 1 147 0 2 684 452 286 84 14 chr1 13072306 13072448 -184122984 + B4 SINE B4 116 267 -25 2 684 1264 54 0 0 chr1 13072592 13072740 -184122692 + B1_Mus1 SINE Alu 1 148 0 2 684 570 259 48 101 chr1 13072781 13073009 -184122423 - B3 SINE B2 0 216 1 2 684 239 273 112 48 chr1 13073020 13073109 -184122323 - B3 SINE B2 -11 187 103 2 684 207 0 0 0 chr1 13073203 13073226 -184122206 + (T)n Simple_repeat Simple_repeat 1 23 0 2 684 1187 54 0 0 chr1 13073246 13073393 -184122039 - B1_Mus2 SINE Alu 0 147 1 2 684 221 297 16 0 chr1 13073393 13073457 -184121975 + CT-rich Low_complexity Low_complexity 5 69 0 2 684 261 0 0 0 chr1 13073903 13073932 -184121500 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 684 1077 88 0 0 chr1 13073932 13074069 -184121363 - B1_Mus2 SINE Alu -10 137 1 2 684 289 232 35 121 chr1 13074329 13074373 -184121059 + PB1D9 SINE Alu 1 120 0 2 684 358 192 0 64 chr1 13074373 13074451 -184120981 + ID_B1 SINE B4 152 224 0 2 684 660 249 17 85 chr1 13074551 13074727 -184120705 + RSINE1 SINE B4 2 165 0 2 684 278 252 210 10 chr1 13075430 13075530 -184119902 - PB1D9 SINE Alu 0 120 1 2 684 189 0 0 0 chr1 13075596 13075617 -184119815 + (CCCTAA)n Simple_repeat Simple_repeat 1 21 0 2 684 355 234 81 97 chr1 13075859 13076044 -184119388 - MER45R DNA Tip100 -773 808 627 2 684 584 198 38 0 chr1 13076067 13076173 -184119259 - B1_Mur4 SINE Alu -32 118 9 2 684 730 177 0 12 chr1 13076194 13076354 -184119078 + CT-rich Low_complexity Low_complexity 3 160 0 2 684 289 258 172 16 chr1 13076355 13076477 -184118955 - B1F1 SINE Alu -6 143 3 2 684 261 0 0 0 chr1 13076953 13076982 -184118450 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 684 367 246 153 51 chr1 13077303 13077440 -184117992 + RSINE1 SINE B4 9 159 -6 2 684 1157 42 28 0 chr1 13077480 13077623 -184117809 - B1_Mus2 SINE Alu 0 147 1 2 684 287 337 0 21 chr1 13077674 13077771 -184117661 - MER5B DNA MER1_type -9 169 75 2 684 1390 62 23 0 chr1 13077947 13078123 -184117309 + B2_Mm2 SINE B2 2 181 -14 2 684 202 156 62 15 chr1 13078129 13078194 -184117238 + (CAGAG)n Simple_repeat Simple_repeat 3 70 0 2 684 2338 133 38 5 chr1 13078252 13078623 -184116809 + ORR1C2 LTR MaLR 2 384 0 2 684 341 260 13 13 chr1 13078645 13078723 -184116709 - B3 SINE B2 -137 79 2 2 684 341 285 54 21 chr1 13079229 13079377 -184116055 - B4A SINE B4 -3 289 138 2 684 1666 26 5 0 chr1 13079377 13079569 -184115863 - B2_Mm1t SINE B2 0 193 1 2 684 253 309 40 120 chr1 13079569 13079610 -184115822 - B4 SINE B4 -141 151 116 2 684 2546 178 0 2 chr1 13079610 13080032 -184115400 + MTC LTR MaLR 1 421 0 2 684 253 309 40 120 chr1 13080032 13080091 -184115341 - B4 SINE B4 -177 115 60 2 684 549 0 0 0 chr1 13080096 13080157 -184115275 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 684 953 126 0 0 chr1 13080157 13080292 -184115140 - MTC LTR MaLR -286 135 1 2 684 1079 113 71 6 chr1 13080292 13080461 -184114971 + B2_Mm2 SINE B2 2 181 -14 2 684 1230 41 0 7 chr1 13080473 13080620 -184114812 - B1_Mus1 SINE Alu 0 148 3 2 684 2412 234 108 14 chr1 13080674 13081332 -184114100 - Lx8 LINE L1 -405 7068 6349 2 684 837 140 0 29 chr1 13081332 13081472 -184113960 + B1_Mur3 SINE Alu 1 136 -13 2 684 318 50 0 0 chr1 13081476 13081516 -184113916 + (T)n Simple_repeat Simple_repeat 1 40 0 2 684 850 58 8 7 chr1 13081516 13081635 -184113797 - B1_Mm SINE Alu 0 147 1 2 684 408 259 99 21 chr1 13081706 13081848 -184113584 - Lx8 LINE L1 -1179 6294 6142 2 684 405 0 0 0 chr1 13082328 13082373 -184113059 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 684 207 0 0 0 chr1 13082373 13082395 -184113037 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 684 1741 173 71 0 chr1 13082402 13082738 -184112694 + Lx9 LINE L1 7138 7497 -147 2 684 277 256 0 68 chr1 13082751 13082764 -184112668 - PB1D10 SINE Alu -3 114 33 2 684 396 213 0 0 chr1 13082764 13082839 -184112593 - ID_B1 SINE B4 -36 188 114 2 684 3416 16 0 0 chr1 13082854 13083239 -184112193 + L1Md_A LINE L1 6198 6582 0 2 684 461 186 34 0 chr1 13083244 13083362 -184112070 + Lx9 LINE L1 7516 7637 -7 2 684 805 186 0 17 chr1 13083838 13084018 -184111414 + T-rich Low_complexity Low_complexity 4 180 0 2 684 236 186 0 0 chr1 13084578 13084621 -184110811 + RLTR24 LTR ERV1 1 43 -486 2 684 509 105 103 11 chr1 13084640 13084727 -184110705 - B1_Mus2 SINE Alu 0 147 53 2 684 1651 130 322 30 chr1 13084694 13085098 -184110334 + RLTR24 LTR ERV1 7 528 -1 2 684 454 233 32 52 chr1 13085194 13085340 -184110092 + PB1D10 SINE Alu 6 147 0 2 684 591 211 111 15 chr1 13085437 13085572 -184109860 - B1_Mur1 SINE Alu -1 148 1 2 684 24 0 0 0 chr1 13085572 13085596 -184109836 + AT_rich Low_complexity Low_complexity 1 24 0 2 684 516 176 117 8 chr1 13085647 13085767 -184109665 - B1_Mus1 SINE Alu -12 136 4 2 684 271 295 41 21 chr1 13086045 13086142 -184109290 + B1F1 SINE Alu 1 99 -50 2 684 325 172 128 0 chr1 13086353 13086434 -184108998 - B3A SINE B2 -122 94 5 2 684 879 220 20 75 chr1 13086465 13086666 -184108766 - B3 SINE B2 -7 209 20 2 684 413 304 8 23 chr1 13086692 13086820 -184108612 - ID_B1 SINE B4 -17 207 82 2 684 575 157 119 9 chr1 13087010 13087119 -184108313 - B1_Mus1 SINE Alu -17 131 11 2 684 360 0 0 0 chr1 13087269 13087309 -184108123 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 684 308 307 66 109 chr1 13088588 13088632 -184106800 + B4 SINE B4 52 225 -66 2 684 706 221 7 14 chr1 13088632 13088770 -184106662 + B1_Mur1 SINE Alu 13 149 0 2 684 400 336 14 34 chr1 13088775 13088923 -184106509 + ID_B1 SINE B4 80 224 0 2 684 813 200 0 46 chr1 13088933 13089077 -184106355 + B1_Mur4 SINE Alu 5 141 -9 2 684 195 42 0 0 chr1 13089077 13089101 -184106331 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 684 231 304 59 59 chr1 13089130 13089249 -184106183 - PB1D7 SINE Alu -1 119 1 2 684 211 114 0 43 chr1 13089336 13089382 -184106050 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2 684 224 211 17 34 chr1 13089406 13089465 -184105967 + (TATG)n Simple_repeat Simple_repeat 1 58 0 2 684 228 207 9 43 chr1 13089476 13089592 -184105840 + (TATG)n Simple_repeat Simple_repeat 3 114 0 2 684 891 258 20 29 chr1 13089620 13089824 -184105608 - B3 SINE B2 -13 203 2 3 684 326 159 14 0 chr1 13089922 13089991 -184105441 + (ATGGTG)n Simple_repeat Simple_repeat 5 74 0 3 684 1097 82 7 13 chr1 13090058 13090207 -184105225 + B1_Mus1 SINE Alu 1 148 0 3 684 207 0 0 0 chr1 13090211 13090234 -184105198 + (A)n Simple_repeat Simple_repeat 1 23 0 3 684 479 247 71 54 chr1 13090257 13090441 -184104991 - MER33 DNA MER1_type -132 192 6 3 684 233 238 200 38 chr1 13090490 13090595 -184104837 - MER5A DNA MER1_type -63 126 5 3 684 22 0 0 0 chr1 13091318 13091340 -184104092 + AT_rich Low_complexity Low_complexity 1 22 0 3 684 803 171 28 14 chr1 13091343 13091485 -184103947 + B1_Mur4 SINE Alu 1 144 -6 3 684 400 252 35 69 chr1 13091599 13091744 -184103688 + B1F SINE Alu 5 144 -5 3 684 539 170 32 13 chr1 13091778 13091933 -184103499 + GA-rich Low_complexity Low_complexity 1 158 0 3 684 697 161 29 21 chr1 13092150 13092290 -184103142 + B1_Mur2 SINE Alu 1 141 -8 3 684 219 236 18 0 chr1 13092330 13092385 -184103047 - ID4 SINE ID -27 56 1 3 684 726 230 123 20 chr1 13092454 13092649 -184102783 + ID_B1 SINE B4 2 216 -8 3 684 580 259 136 11 chr1 13092768 13092959 -184102473 - B3 SINE B2 0 216 2 3 684 186 71 0 0 chr1 13093172 13093200 -184102232 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 684 243 0 0 0 chr1 13093402 13093429 -184102003 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 684 228 245 0 0 chr1 13093455 13093508 -184101924 - B3A SINE B2 -43 155 103 3 684 207 0 0 0 chr1 13093853 13093876 -184101556 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 684 335 219 35 47 chr1 13094702 13094788 -184100644 + PB1 SINE Alu 21 105 -22 3 684 277 310 51 65 chr1 13094868 13094901 -184100531 + MT2B LTR ERVL 127 157 -444 3 684 378 291 61 18 chr1 13094901 13095040 -184100392 + B1F1 SINE Alu 1 148 -1 3 684 406 209 257 0 chr1 13095960 13096065 -184099367 - B1_Mur2 SINE Alu -13 136 5 3 684 34 0 0 41 chr1 13096082 13096109 -184099323 + AT_rich Low_complexity Low_complexity 1 27 0 3 684 1207 68 0 0 chr1 13096109 13096256 -184099176 - B1_Mus2 SINE Alu 0 147 1 3 684 34 0 0 41 chr1 13096256 13096277 -184099155 + AT_rich Low_complexity Low_complexity 1 20 0 3 684 500 205 54 0 chr1 13096626 13096738 -184098694 + PB1D9 SINE Alu 2 119 -1 3 684 341 289 0 24 chr1 13096748 13096833 -184098599 + PB1D7 SINE Alu 1 83 -37 3 684 180 0 0 0 chr1 13097052 13097072 -184098360 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 684 1206 48 14 0 chr1 13097086 13097232 -184098200 - B1_Mus1 SINE Alu 0 148 1 3 684 892 195 5 62 chr1 13097870 13098078 -184097354 + B3A SINE B2 3 198 0 3 684 399 264 55 0 chr1 13098098 13098189 -184097243 + ID_B1 SINE B4 122 217 -7 3 684 969 137 97 0 chr1 13098376 13098551 -184096881 + B2_Mm2 SINE B2 2 193 -2 3 684 301 204 28 93 chr1 13098729 13098837 -184096595 - B1F1 SINE Alu -3 146 46 3 684 635 180 35 14 chr1 13098846 13098987 -184096445 - B1_Mur2 SINE Alu -1 148 5 3 684 546 198 10 19 chr1 13099369 13099472 -184095960 + ID_B1 SINE B4 57 158 -66 3 684 260 301 40 27 chr1 13099410 13099485 -184095947 + B1_Mur4 SINE Alu 19 94 -56 3 684 1682 154 51 57 chr1 13100148 13100428 -184095004 + ORR1A4 LTR MaLR 1 289 -40 3 684 1072 87 0 0 chr1 13100428 13100566 -184094866 + B1_Mm SINE Alu 1 138 -9 3 684 288 0 0 0 chr1 13100566 13100598 -184094834 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 684 1682 154 51 57 chr1 13100598 13100647 -184094785 + ORR1A4 LTR MaLR 290 328 -1 3 684 408 319 8 78 chr1 13102471 13102545 -184092887 - PB1D7 SINE Alu 0 120 55 3 684 4840 55 0 0 chr1 13102545 13103132 -184092300 - L1Md_F2 LINE L1 -1 6581 5995 3 684 408 319 8 78 chr1 13103132 13103186 -184092246 - PB1D7 SINE Alu -66 54 1 3 684 908 102 31 8 chr1 13103324 13103452 -184091980 + B1_Mur4 SINE Alu 1 131 -19 3 684 258 292 0 0 chr1 13103791 13103839 -184091593 + ID_B1 SINE B4 146 193 -31 3 684 751 250 80 0 chr1 13103896 13104084 -184091348 + B3 SINE B2 1 203 -13 3 684 835 168 7 49 chr1 13104699 13104843 -184090589 + B1_Mur4 SINE Alu 13 150 0 3 684 1428 84 11 0 chr1 13104986 13105176 -184090256 - B2_Mm1t SINE B2 -1 192 1 3 684 292 253 147 17 chr1 13105385 13105519 -184089913 - MIR SINE MIR -40 168 18 3 684 1225 28 0 0 chr1 13105545 13105688 -184089744 + B1_Mm SINE Alu 5 147 0 3 684 275 246 0 32 chr1 13105703 13105766 -184089666 - PB1D9 SINE Alu 0 120 60 3 684 574 240 134 65 chr1 13106779 13106960 -184088472 + B4A SINE B4 3 209 -83 3 85 3594 13 2 0 chr1 13106960 13107355 -184088077 + MTA_Mm LTR MaLR 1 396 0 3 685 574 261 124 73 chr1 13107355 13107454 -184087978 + B4A SINE B4 209 292 0 3 685 180 0 0 0 chr1 13107472 13107492 -184087940 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 685 779 219 98 35 chr1 13107515 13107718 -184087714 + B3 SINE B2 1 216 0 3 685 204 135 0 0 chr1 13107782 13107819 -184087613 + (A)n Simple_repeat Simple_repeat 1 37 0 3 685 439 276 114 24 chr1 13107964 13108131 -184087301 + B3A SINE B2 1 182 -16 3 685 1456 44 72 0 chr1 13108300 13108480 -184086952 + B2_Mm1t SINE B2 1 193 0 3 685 316 262 184 0 chr1 13109151 13109184 -184086248 + B1F SINE Alu 1 121 -27 3 685 375 232 0 0 chr1 13109184 13109253 -184086179 + ID_B1 SINE B4 131 199 -25 3 685 246 294 58 12 chr1 13109453 13109539 -184085893 + PB1D10 SINE Alu 25 114 -3 3 685 399 218 118 0 chr1 13109716 13109826 -184085606 - MTC-int LTR MaLR 0 1258 1136 3 685 652 150 16 40 chr1 13109819 13109944 -184085488 + B1_Mus1 SINE Alu 27 148 0 3 685 1457 155 132 31 chr1 13109936 13110255 -184085177 + RMER15 LTR ERVL 58 408 -167 3 685 328 353 20 0 chr1 13110378 13110480 -184084952 - PB1D10 SINE Alu -5 112 9 3 685 251 243 13 63 chr1 13110527 13110606 -184084826 + ID2 SINE ID 4 78 -5 3 685 542 28 14 0 chr1 13110768 13110840 -184084592 - B1_Mus2 SINE Alu 0 147 75 3 685 368 267 167 0 chr1 13111044 13111164 -184084268 + B1_Mur2 SINE Alu 1 140 -9 3 685 234 0 0 0 chr1 13111164 13111190 -184084242 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 685 224 363 88 0 chr1 13111193 13111284 -184084148 + B4 SINE B4 84 182 -110 3 685 396 104 0 0 chr1 13111553 13111620 -184083812 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 685 422 238 12 0 chr1 13111634 13111718 -184083714 + PB1D10 SINE Alu 33 117 0 3 685 180 152 0 0 chr1 13111718 13111751 -184083681 + A-rich Low_complexity Low_complexity 1 33 0 3 685 451 179 4 20 chr1 13111832 13111937 -184083495 - B1_Mus2 SINE Alu -4 116 15 3 685 287 304 101 7 chr1 13112064 13112213 -184083219 - MER112 DNA MER1_type -93 168 6 3 685 274 296 36 18 chr1 13112756 13112866 -184082566 - PB1D10 SINE Alu -1 116 5 3 685 343 255 176 0 chr1 13113018 13113120 -184082312 - ID_B1 SINE B4 -17 207 88 3 685 363 275 25 0 chr1 13113380 13113460 -184081972 - ID_B1 SINE B4 -123 101 20 3 685 288 0 0 0 chr1 13113486 13113518 -184081914 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 685 1165 62 0 7 chr1 13113539 13113686 -184081746 - B1_Mm SINE Alu -1 146 1 3 685 321 266 96 17 chr1 13114847 13114962 -184080470 - MIRc SINE MIR -31 237 114 3 685 32 0 0 0 chr1 13116330 13116362 -184079070 + AT_rich Low_complexity Low_complexity 1 32 0 3 685 192 92 17 85 chr1 13117018 13117077 -184078355 + A-rich Low_complexity Low_complexity 3 57 0 3 685 180 0 0 0 chr1 13117494 13117514 -184077918 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 685 221 196 22 0 chr1 13117610 13117656 -184077776 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 685 939 84 0 0 chr1 13117835 13117978 -184077454 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 685 306 236 96 53 chr1 13118958 13119052 -184076380 - PB1D10 SINE Alu -3 114 17 3 685 485 228 115 40 chr1 13119109 13119187 -184076245 - B3 SINE B2 -7 209 126 3 685 192 40 0 0 chr1 13119187 13119212 -184076220 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 685 485 228 115 40 chr1 13119212 13119307 -184076125 - B3 SINE B2 -91 125 24 3 685 225 0 0 0 chr1 13119435 13119460 -184075972 + (T)n Simple_repeat Simple_repeat 1 25 0 3 685 265 146 49 0 chr1 13119712 13119753 -184075679 - URR1B DNA MER1_type -155 70 28 3 685 256 265 15 0 chr1 13119753 13119821 -184075611 - Lx7 LINE L1 -881 6815 6747 3 685 445 254 101 36 chr1 13119866 13120005 -184075427 - B1_Mur3 SINE Alu 0 149 2 3 685 1032 133 0 0 chr1 13120122 13120302 -184075130 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 685 545 0 15 0 chr1 13120308 13120373 -184075059 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 3 685 824 158 0 29 chr1 13120373 13120510 -184074922 - B1_Mus1 SINE Alu -5 143 11 3 685 1271 122 16 5 chr1 13120908 13121097 -184074335 + B2_Mm2 SINE B2 2 192 -3 3 685 195 42 0 0 chr1 13121098 13121122 -184074310 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 3 685 207 0 0 0 chr1 13121347 13121370 -184074062 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 685 1927 162 68 27 chr1 13121416 13121828 -184073604 - RMER10A LTR ERVL 0 442 14 3 685 189 139 0 0 chr1 13121981 13122024 -184073408 + (T)n Simple_repeat Simple_repeat 1 43 0 3 685 345 47 0 0 chr1 13122709 13122752 -184072680 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 685 529 83 24 0 chr1 13122746 13122830 -184072602 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 3 685 1100 64 0 0 chr1 13122832 13122972 -184072460 - B1_Mus1 SINE Alu 0 148 9 4 685 684 251 5 90 chr1 13122972 13123031 -184072401 - ID_B1 SINE B4 0 222 41 4 685 1662 219 69 15 chr1 13123042 13123431 -184072001 + MTD LTR MaLR 3 412 -7 4 685 1249 54 0 0 chr1 13124008 13124155 -184071277 + B1_Mus2 SINE Alu 1 147 0 4 685 745 151 24 0 chr1 13124185 13124311 -184071121 + B1_Mm SINE Alu 5 133 -14 4 685 252 338 78 14 chr1 13124679 13124820 -184070612 - MERVL-int LTR ERVL -1271 4214 4065 4 685 3429 73 14 0 chr1 13124825 13125266 -184070166 - LTRIS5 LTR ERV1 0 447 1 4 685 389 177 210 89 chr1 13125344 13125379 -184070053 - RSINE1 SINE B4 -21 144 116 4 685 1965 128 194 11 chr1 13125379 13125734 -184069698 + MTC LTR MaLR 2 421 0 4 685 389 177 210 89 chr1 13125734 13125822 -184069610 - RSINE1 SINE B4 -50 115 6 4 685 353 290 65 0 chr1 13126017 13126110 -184069322 + ID_B1 SINE B4 84 182 -42 4 685 1081 118 39 0 chr1 13126515 13126693 -184068739 + MT2C_Mm LTR ERVL 291 475 0 4 685 7973 117 46 40 chr1 13126693 13127754 -184067678 + MERVL-int LTR ERVL 1 1096 -4389 4 685 1140 68 7 7 chr1 13127754 13127901 -184067531 + B1_Mm SINE Alu 1 147 0 4 685 7973 117 46 40 chr1 13127901 13128125 -184067307 + MERVL-int LTR ERVL 1097 1294 -4191 4 685 570 253 25 12 chr1 13128157 13128317 -184067115 + RSINE1 SINE B4 3 164 -1 4 685 592 264 87 15 chr1 13128456 13128652 -184066780 - B3 SINE B2 -2 214 5 4 685 366 256 165 0 chr1 13128684 13128805 -184066627 - ID_B1 SINE B4 0 224 84 4 685 461 192 172 0 chr1 13128707 13128806 -184066626 - B1_Mur3 SINE Alu -32 117 2 4 685 645 34 0 0 chr1 13128818 13128907 -184066525 - L1Md_F3 LINE L1 -14 6570 6482 4 685 710 277 16 28 chr1 13128946 13129128 -184066304 - B3 SINE B2 -4 212 33 4 685 216 97 0 0 chr1 13130166 13130197 -184065235 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 685 225 239 67 53 chr1 13133251 13133326 -184062106 - B4A SINE B4 -215 77 2 4 685 705 184 43 22 chr1 13133362 13133501 -184061931 - B1F2 SINE Alu -7 142 1 4 685 559 211 132 80 chr1 13133509 13133692 -184061740 - B3A SINE B2 -10 183 5 4 685 1304 96 27 5 chr1 13133705 13133893 -184061539 - B2_Mm2 SINE B2 -2 193 2 4 685 264 232 48 12 chr1 13133916 13133999 -184061433 + MurSatRep1 Unknown Unknown 178 263 -1874 4 685 1184 44 0 0 chr1 13134517 13134653 -184060779 + B1_Mm SINE Alu 1 136 -11 4 685 378 42 0 0 chr1 13134653 13134701 -184060731 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 685 1302 50 84 0 chr1 13134928 13135107 -184060325 + B2_Mm2 SINE B2 2 195 0 4 685 223 208 57 0 chr1 13135294 13135347 -184060085 - B1_Mur1 SINE Alu -5 144 89 4 685 298 236 54 0 chr1 13135396 13135481 -184059951 - B1_Mur1 SINE Alu -5 144 51 4 685 244 254 0 17 chr1 13136461 13136521 -184058911 - ID_B1 SINE B4 -6 218 160 4 685 284 331 94 77 chr1 13136663 13136833 -184058599 - FAM SINE Alu 0 311 139 4 685 652 252 57 48 chr1 13136695 13136886 -184058546 - ID_B1 SINE B4 0 224 35 4 685 322 343 90 0 chr1 13137394 13137528 -184057904 - RSINE1 SINE B4 -14 151 6 4 685 835 166 21 0 chr1 13137957 13138102 -184057330 - B1_Mur3 SINE Alu 0 149 2 4 685 347 239 137 34 chr1 13141268 13141385 -184054047 - B3A SINE B2 0 198 70 4 685 297 261 112 11 chr1 13141589 13141678 -184053754 + 7SK RNA RNA 1 98 -233 4 685 705 266 133 23 chr1 13142045 13142353 -184053079 - MER82 DNA MER2_type -311 342 1 4 685 318 192 0 19 chr1 13142579 13142632 -184052800 - B1F SINE Alu -9 140 89 4 685 450 147 305 0 chr1 13142629 13142724 -184052708 - B1_Mur4 SINE Alu -3 147 24 4 685 557 289 14 0 chr1 13143695 13143837 -184051595 - ID_B1 SINE B4 -9 215 72 4 685 681 209 54 0 chr1 13144124 13144253 -184051179 - B1_Mur2 SINE Alu -13 136 1 4 685 242 116 23 0 chr1 13144358 13144401 -184051031 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 685 455 230 184 75 chr1 13144952 13145126 -184050306 - B4A SINE B4 -74 218 26 4 685 232 339 0 0 chr1 13147392 13147451 -184047981 - ID_B1 SINE B4 -133 91 33 4 685 242 290 0 16 chr1 13147400 13147463 -184047969 - ID4_ SINE ID -1 82 21 4 685 273 59 0 0 chr1 13147776 13147810 -184047622 - B1F SINE Alu -5 144 111 4 685 229 182 236 0 chr1 13147876 13147931 -184047501 - PB1D9 SINE Alu -15 105 38 4 685 369 93 0 0 chr1 13147931 13147985 -184047447 + (CACG)n Simple_repeat Simple_repeat 1 54 0 4 685 261 258 30 0 chr1 13148122 13148188 -184047244 + PB1D10 SINE Alu 1 68 -49 4 685 3022 57 5 5 chr1 13148204 13148589 -184046843 - L1Md_A LINE L1 0 6582 6198 4 685 322 65 0 0 chr1 13148610 13148656 -184046776 - B1_Mur4 SINE Alu -1 149 104 4 685 426 100 60 0 chr1 13148669 13148769 -184046663 + CT-rich Low_complexity Low_complexity 1 106 0 4 685 661 310 22 0 chr1 13148782 13148966 -184046466 - B4A SINE B4 -104 188 1 4 685 1875 198 174 57 chr1 13148981 13149069 -184046363 - Lx9 LINE L1 -48 7596 7466 4 685 204 40 0 0 chr1 13149069 13149094 -184046338 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 685 1875 198 174 57 chr1 13149094 13149506 -184045926 - Lx9 LINE L1 -179 7465 7029 4 685 1198 68 0 0 chr1 13149506 13149653 -184045779 - B1_Mus2 SINE Alu 0 147 1 4 685 1875 198 174 57 chr1 13149653 13149714 -184045718 - Lx9 LINE L1 -616 7028 6969 4 685 414 259 111 8 chr1 13151419 13151536 -184043896 - ID_B1 SINE B4 0 224 96 4 685 201 237 0 0 chr1 13152706 13152744 -184042688 + (AGGTG)n Simple_repeat Simple_repeat 4 41 0 4 685 1219 61 0 0 chr1 13156264 13156411 -184039021 - B1_Mus2 SINE Alu 0 147 1 4 685 626 123 36 36 chr1 13156763 13156873 -184038559 - PB1D10 SINE Alu -7 110 1 4 685 723 64 178 31 chr1 13157809 13157938 -184037494 - B1_Mur3 SINE Alu -1 148 1 4 685 310 162 337 20 chr1 13158196 13158297 -184037135 + B1F SINE Alu 17 149 0 4 685 437 280 16 25 chr1 13158419 13158540 -184036892 - RSINE1 SINE B4 -30 135 16 4 685 330 262 37 0 chr1 13159251 13159358 -184036074 - PB1D9 SINE Alu -7 113 3 4 685 258 214 7 109 chr1 13159376 13159473 -184035959 - PB1D9 SINE Alu -34 115 24 4 685 322 361 0 0 chr1 13159674 13159771 -184035661 - ID_B1 SINE B4 -31 193 97 4 685 543 101 0 0 chr1 13159819 13159898 -184035534 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 685 1282 34 0 0 chr1 13160019 13160166 -184035266 - B1_Mus2 SINE Alu 0 147 1 4 685 249 326 10 78 chr1 13160565 13160668 -184034764 - MT2B2 LTR ERVL -332 252 157 4 685 216 0 0 0 chr1 13161607 13161631 -184033801 + (T)n Simple_repeat Simple_repeat 1 24 0 4 685 675 0 0 0 chr1 13162437 13162512 -184032920 + (CACAT)n Simple_repeat Simple_repeat 5 79 0 4 685 360 258 117 57 chr1 13163118 13163348 -184032084 + L1MA8 LINE L1 5985 6228 -63 4 685 26 0 0 0 chr1 13163368 13163394 -184032038 + AT_rich Low_complexity Low_complexity 1 26 0 4 685 884 147 14 0 chr1 13166794 13166937 -184028495 - B1_Mur2 SINE Alu 0 149 5 4 685 466 234 45 52 chr1 13167579 13167758 -184027674 - B3 SINE B2 -5 190 1 4 685 1234 48 0 0 chr1 13168159 13168305 -184027127 + B1_Mus2 SINE Alu 2 147 0 4 685 198 26 77 0 chr1 13168305 13168344 -184027088 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 4 685 1168 94 71 0 chr1 13168344 13168514 -184026918 - B2_Mm2 SINE B2 -13 182 1 4 685 404 275 32 39 chr1 13169282 13169437 -184025995 - B4A SINE B4 -138 154 1 4 685 1126 198 10 0 chr1 13171966 13172168 -184023264 - B3 SINE B2 -12 204 1 4 685 339 261 50 36 chr1 13172551 13172690 -184022742 - B1F2 SINE Alu 0 149 9 4 685 465 285 69 0 chr1 13172844 13172974 -184022458 - ID_B1 SINE B4 -78 146 8 4 685 1498 58 0 41 chr1 13180773 13180970 -184014462 - B2_Mm2 SINE B2 -5 190 2 4 685 1034 195 28 5 chr1 13182359 13182575 -184012857 - URR1B DNA MER1_type 0 225 5 4 685 349 246 159 62 chr1 13183322 13183517 -184011915 - MTEa LTR MaLR 0 379 166 4 685 672 181 118 0 chr1 13184424 13184551 -184010881 - B1_Mus1 SINE Alu 0 148 7 4 685 2399 151 42 0 chr1 13187552 13187956 -184007476 - MTC LTR MaLR 0 421 1 4 685 3374 35 10 0 chr1 13188143 13188539 -184006893 + MTB LTR MaLR 1 400 0 4 685 475 284 113 0 chr1 13188938 13189079 -184006353 + RSINE1 SINE B4 3 159 -6 4 685 500 200 219 7 chr1 13189289 13189440 -184005992 + B3 SINE B2 31 213 -3 4 685 2230 90 26 0 chr1 13189788 13190099 -184005333 + ORR1A2 LTR MaLR 1 319 -8 4 685 358 284 16 101 chr1 13190420 13190444 -184004988 + MT2B LTR ERVL 145 227 -374 4 685 495 195 33 4 chr1 13190444 13190541 -184004891 + B1_Mus1 SINE Alu 1 102 -18 4 685 547 164 122 8 chr1 13190717 13190840 -184004592 + URR1B DNA MER1_type 89 225 0 4 685 483 125 29 86 chr1 13192001 13192106 -184003326 - PB1D9 SINE Alu -2 118 20 4 685 322 222 9 159 chr1 13192212 13192319 -184003113 - RSINE1 SINE B4 -70 95 5 4 685 258 207 195 0 chr1 13194496 13194578 -184000854 - RSINE1 SINE B4 -14 151 54 4 685 21 0 0 0 chr1 13194627 13194648 -184000784 + AT_rich Low_complexity Low_complexity 1 21 0 4 685 247 132 19 0 chr1 13194670 13194723 -184000709 - RMER17C LTR ERVK 0 410 357 4 685 985 41 0 0 chr1 13196335 13196456 -183998976 + B1_Mus2 SINE Alu 27 147 0 4 685 360 235 52 22 chr1 13196546 13196681 -183998751 + B1F1 SINE Alu 1 139 -10 5 685 219 36 0 0 chr1 13196681 13196709 -183998723 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 5 685 4461 10 2 12 chr1 13197608 13198106 -183997326 - MT2_Mm LTR ERVL 0 493 1 5 685 319 0 0 0 chr1 13198106 13198144 -183997288 - MERVL-int LTR ERVL 0 5485 5448 5 685 403 167 46 35 chr1 13198144 13198231 -183997201 - ORR1A3-int LTR MaLR -1323 640 553 5 685 48898 16 0 0 chr1 13198231 13203590 -183991842 - MERVL-int LTR ERVL -125 5360 1 5 685 4461 10 2 12 chr1 13203590 13204088 -183991344 - MT2_Mm LTR ERVL 0 493 1 5 685 222 337 10 42 chr1 13204816 13204912 -183990520 + MIR SINE MIR 127 219 -43 5 685 201 179 0 25 chr1 13205832 13205872 -183989560 + A-rich Low_complexity Low_complexity 4 42 0 5 685 303 28 0 0 chr1 13206124 13206160 -183989272 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 685 537 254 164 20 chr1 13206782 13206983 -183988449 - MER63D DNA AcHobo -10 1051 822 5 685 243 0 0 0 chr1 13207179 13207206 -183988226 + (A)n Simple_repeat Simple_repeat 1 27 0 5 685 308 169 490 10 chr1 13207505 13207601 -183987831 - B1_Mur2 SINE Alu -7 142 1 5 685 227 343 110 14 chr1 13208436 13208581 -183986851 + MIR SINE MIR 31 189 -73 5 685 212 59 29 0 chr1 13208710 13208744 -183986688 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 685 560 236 27 9 chr1 13208924 13209035 -183986397 - B1F2 SINE Alu -4 145 33 5 685 258 32 0 0 chr1 13209838 13209869 -183985563 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 685 844 79 0 0 chr1 13213001 13213115 -183982317 - B1_Mus1 SINE Alu -34 114 1 5 685 424 227 28 90 chr1 13213115 13213142 -183982290 - MT2B LTR ERVL -327 270 139 5 685 867 135 15 8 chr1 13213205 13213339 -183982093 + B1_Mur3 SINE Alu 2 136 -13 5 685 833 226 148 3 chr1 13213426 13213710 -183981722 + ORR1D2 LTR MaLR 1 362 -8 5 685 366 243 93 42 chr1 13213884 13214011 -183981421 - B1F SINE Alu -6 143 14 5 685 189 74 0 0 chr1 13216044 13216071 -183979361 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 685 1331 94 6 11 chr1 13217390 13217572 -183977860 + B2_Mm1t SINE B2 1 181 -12 5 685 346 169 30 21 chr1 13217651 13217763 -183977669 + B2_Mm2 SINE B2 47 191 -4 5 685 569 202 47 31 chr1 13218876 13219004 -183976428 - B1_Mus1 SINE Alu -16 132 3 5 685 293 237 0 0 chr1 13219075 13219134 -183976298 - ID4 SINE ID -3 80 22 5 685 281 187 145 13 chr1 13219138 13219214 -183976218 - PB1D10 SINE Alu -2 115 30 5 685 1285 135 10 0 chr1 13220162 13220355 -183975077 + B2_Mm2 SINE B2 1 195 0 5 685 661 24 0 35 chr1 13220357 13220444 -183974988 + B1_Mus2 SINE Alu 64 147 0 5 685 221 214 17 51 chr1 13221881 13221940 -183973492 + B1F2 SINE Alu 2 58 -91 5 685 234 282 88 35 chr1 13222284 13222398 -183973034 - Tigger13a DNA MER2_type -26 745 626 5 685 271 264 22 110 chr1 13222781 13222917 -183972515 - Tigger13a DNA MER2_type -525 246 123 5 685 396 0 0 0 chr1 13223231 13223275 -183972157 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 685 1329 72 49 11 chr1 13223412 13223596 -183971836 + B2_Mm2 SINE B2 3 193 -2 5 685 870 127 14 14 chr1 13223649 13223793 -183971639 - B1_Mur4 SINE Alu 0 150 7 5 685 527 251 119 16 chr1 13224294 13224488 -183970944 + B3 SINE B2 1 214 -2 5 685 1320 190 27 27 chr1 13224891 13225183 -183970249 + MTD LTR MaLR 13 304 -115 5 685 313 381 32 6 chr1 13226162 13226318 -183969114 - MER46C DNA MER2_type -99 239 80 5 685 429 248 97 9 chr1 13226538 13226652 -183968780 + 7SK RNA RNA 110 233 -98 5 685 768 103 17 8 chr1 13227448 13227566 -183967866 - PB1D9 SINE Alu 0 120 2 5 685 22 0 0 0 chr1 13227566 13227588 -183967844 + AT_rich Low_complexity Low_complexity 1 22 0 5 685 249 284 59 0 chr1 13227907 13228009 -183967423 + L1MB4 LINE L1 5715 5822 -346 5 685 366 276 85 7 chr1 13228096 13228249 -183967183 + L1MB4 LINE L1 5951 6115 -65 5 685 1745 170 101 13 chr1 13228639 13229026 -183966406 - MTC LTR MaLR 0 421 1 5 685 983 182 20 20 chr1 13229645 13229847 -183965585 + B3 SINE B2 1 202 -14 5 685 548 260 0 8 chr1 13229874 13229998 -183965434 + B3A SINE B2 1 123 -75 5 685 965 82 22 7 chr1 13230044 13230179 -183965253 + L1_Mm LINE L1 4806 4942 -941 5 685 1023 112 25 0 chr1 13233467 13233627 -183961805 - B2_Mm2 SINE B2 -30 165 2 5 685 252 0 0 0 chr1 13233992 13234020 -183961412 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 685 221 250 0 20 chr1 13235769 13235818 -183959614 + polypurine Low_complexity Low_complexity 3 50 0 5 685 416 298 57 8 chr1 13236617 13236739 -183958693 - B3A SINE B2 -70 128 1 5 685 284 275 71 21 chr1 13236856 13236997 -183958435 - L1MB2 LINE L1 -65 6106 5959 5 686 668 181 57 14 chr1 13238490 13238630 -183956802 - B1_Mus2 SINE Alu 0 147 2 5 686 307 219 0 52 chr1 13238862 13238939 -183956493 + MTC LTR MaLR 1 73 -348 5 686 23 68 0 0 chr1 13238985 13239029 -183956403 + AT_rich Low_complexity Low_complexity 1 44 0 5 686 394 241 25 88 chr1 13239167 13239326 -183956106 + B1_Mur3 SINE Alu 1 149 0 5 686 1044 203 169 137 chr1 13240690 13240853 -183954579 + MT2A LTR ERVL 1 159 -374 5 686 850 184 143 0 chr1 13240853 13241049 -183954383 + URR1A DNA MER1_type 3 226 0 5 686 1044 203 169 137 chr1 13241049 13241359 -183954073 + MT2A LTR ERVL 160 489 -44 5 686 451 255 60 0 chr1 13242292 13242441 -183952991 + L1M3 LINE L1 5399 5556 -615 5 686 228 216 0 56 chr1 13242521 13242575 -183952857 + L1M3 LINE L1 5840 5890 -293 5 686 520 224 83 52 chr1 13243089 13243282 -183952150 + B3 SINE B2 2 200 -16 5 686 675 153 0 0 chr1 13245084 13245335 -183950097 + (TG)n Simple_repeat Simple_repeat 1 251 0 5 686 180 0 0 0 chr1 13245336 13245356 -183950076 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 686 198 0 0 0 chr1 13245357 13245379 -183950053 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 686 388 264 0 82 chr1 13248169 13248363 -183947069 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 686 216 200 0 0 chr1 13248363 13248408 -183947024 + G-rich Low_complexity Low_complexity 5 49 0 5 686 788 104 5 7 chr1 13248448 13248571 -183946861 - ORR1A2 LTR MaLR -23 336 194 5 686 228 296 33 22 chr1 13248825 13248915 -183946517 + L1MB3 LINE L1 6053 6143 -40 5 686 612 95 31 87 chr1 13249484 13249611 -183945821 - PB1D9 SINE Alu 0 120 1 5 686 1203 41 14 0 chr1 13250207 13250352 -183945080 + B1_Mm SINE Alu 1 147 0 5 686 189 0 0 0 chr1 13250352 13250373 -183945059 + (A)n Simple_repeat Simple_repeat 1 21 0 5 686 329 303 235 6 chr1 13252647 13252813 -183942619 - B3 SINE B2 -6 210 7 5 686 255 280 147 0 chr1 13252877 13252952 -183942480 + RSINE1 SINE B4 2 87 -78 5 686 1221 91 63 0 chr1 13253137 13253312 -183942120 + B2_Mm1a SINE B2 2 187 -6 5 686 341 274 141 0 chr1 13253494 13253629 -183941803 - RSINE1 SINE B4 -8 157 4 5 686 354 222 156 0 chr1 13253892 13253982 -183941450 - PB1D10 SINE Alu -11 106 3 5 686 745 39 0 0 chr1 13254051 13254155 -183941277 - L1Md_F2 LINE L1 -1 6581 6478 5 686 1196 132 11 0 chr1 13254168 13254350 -183941082 - B2_Mm1t SINE B2 -9 184 1 5 686 273 233 14 14 chr1 13254582 13254656 -183940776 + (CAGA)n Simple_repeat Simple_repeat 2 75 0 5 686 998 66 0 0 chr1 13254975 13255112 -183940320 + B1_Mus1 SINE Alu 12 148 0 5 686 35 24 0 0 chr1 13255301 13255343 -183940089 + AT_rich Low_complexity Low_complexity 1 42 0 5 686 331 99 0 80 chr1 13257175 13257263 -183938169 + G-rich Low_complexity Low_complexity 6 86 0 5 686 200 256 0 0 chr1 13257643 13257686 -183937746 + (CCG)n Simple_repeat Simple_repeat 3 45 0 5 686 198 0 0 0 chr1 13258418 13258440 -183936992 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 5 686 414 0 0 0 chr1 13258849 13258895 -183936537 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 686 1309 46 108 11 chr1 13259168 13259344 -183936088 + B2_Mm2 SINE B2 1 193 -2 5 686 655 233 53 0 chr1 13259371 13259504 -183935928 + B1_Mm SINE Alu 3 142 -5 5 686 346 292 26 0 chr1 13259540 13259653 -183935779 + B1F2 SINE Alu 18 133 -16 5 686 227 379 71 71 chr1 13261108 13261418 -183934014 + ORR1E LTR MaLR 8 317 -42 5 686 1295 317 85 35 chr1 13261444 13262266 -183933166 + MTE-int LTR MaLR 1 863 -717 5 686 677 290 227 16 chr1 13262346 13262774 -183932658 + MTE-int LTR MaLR 1029 1546 -34 5 686 311 272 187 75 chr1 13262759 13263037 -183932395 + ORR1E LTR MaLR 5 313 -46 5 686 1353 13 0 0 chr1 13263042 13263197 -183932235 + (TG)n Simple_repeat Simple_repeat 2 156 0 5 686 917 273 32 49 chr1 13263984 13264354 -183931078 - L1MB8 LINE L1 -138 6040 5677 5 686 305 317 8 98 chr1 13264791 13264914 -183930518 + PB1D10 SINE Alu 2 124 -3 5 686 618 211 0 70 chr1 13266166 13266309 -183929123 + B1_Mur3 SINE Alu 1 133 -16 5 686 845 192 47 38 chr1 13266840 13267051 -183928381 + B3 SINE B2 4 216 0 5 686 325 226 71 0 chr1 13267298 13267382 -183928050 - B3A SINE B2 -108 90 1 5 686 966 99 0 60 chr1 13268817 13268967 -183926465 + B1_Mur3 SINE Alu 1 141 -8 5 686 219 167 0 0 chr1 13268975 13269017 -183926415 + G-rich Low_complexity Low_complexity 3 44 0 5 686 191 227 15 0 chr1 13269062 13269128 -183926304 + GA-rich Low_complexity Low_complexity 2 68 0 5 686 692 250 41 10 chr1 13270214 13270408 -183925024 - ID_B1 SINE B4 -3 221 22 5 686 413 90 15 0 chr1 13270676 13270743 -183924689 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 686 415 238 109 0 chr1 13271014 13271115 -183924317 + B1_Mur2 SINE Alu 26 137 -12 5 686 234 0 0 0 chr1 13271115 13271141 -183924291 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 686 459 0 0 0 chr1 13272159 13272210 -183923222 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 686 353 231 80 58 chr1 13273827 13273965 -183921467 - B1F SINE Alu -6 143 3 6 686 463 289 8 23 chr1 13274713 13274844 -183920588 + RSINE1 SINE B4 16 144 -21 6 686 215 196 65 39 chr1 13277687 13277841 -183917591 + (CAGA)n Simple_repeat Simple_repeat 2 159 0 6 686 489 265 129 0 chr1 13278713 13278860 -183916572 + B3 SINE B2 51 216 0 6 686 303 281 170 0 chr1 13278954 13279107 -183916325 - B3A SINE B2 -17 181 3 6 686 206 62 0 30 chr1 13279201 13279234 -183916198 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 686 242 279 85 54 chr1 13279254 13279383 -183916049 - B4A SINE B4 -3 289 157 6 686 276 30 0 0 chr1 13280587 13280620 -183914812 + (CCCCCA)n Simple_repeat Simple_repeat 1 33 0 6 686 243 0 0 0 chr1 13280769 13280796 -183914636 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 686 231 203 0 0 chr1 13280899 13280958 -183914474 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 686 336 269 103 14 chr1 13282813 13282995 -183912437 - L1MA5 LINE L1 -61 6239 6043 6 686 631 180 86 0 chr1 13283012 13283140 -183912292 - L1MA5 LINE L1 -317 5983 5845 6 686 350 236 52 61 chr1 13283142 13283320 -183912112 + L1MA5 LINE L1 5624 5801 -499 6 686 339 236 27 54 chr1 13283932 13284044 -183911388 - URR1B DNA MER1_type -2 223 115 6 686 231 88 0 0 chr1 13284707 13284741 -183910691 + (CGGGGG)n Simple_repeat Simple_repeat 3 36 0 6 686 276 30 0 0 chr1 13285537 13285570 -183909862 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 686 307 362 34 38 chr1 13285778 13286016 -183909416 - Tigger5 DNA MER2_type -2164 242 6 6 686 422 273 49 60 chr1 13286049 13286232 -183909200 + B3A SINE B2 4 184 -14 6 686 422 282 13 26 chr1 13287346 13287499 -183907933 + RSINE1 SINE B4 3 153 -12 6 686 345 100 0 0 chr1 13287504 13287554 -183907878 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 686 706 175 51 0 chr1 13288332 13288469 -183906963 - B1_Mus1 SINE Alu -2 146 3 6 686 562 82 87 58 chr1 13288655 13288759 -183906673 + B1_Mus1 SINE Alu 27 133 -15 6 686 424 191 11 35 chr1 13288805 13288892 -183906540 + B1_Mus1 SINE Alu 6 90 -58 6 686 567 43 0 0 chr1 13288916 13288986 -183906446 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 6 686 21 0 0 0 chr1 13289021 13289042 -183906390 + AT_rich Low_complexity Low_complexity 1 21 0 6 686 600 210 19 117 chr1 13289116 13289278 -183906154 + RMER13B LTR ERVK 1 146 -762 6 686 423 0 0 0 chr1 13290513 13290560 -183904872 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 686 204 40 0 0 chr1 13290563 13290588 -183904844 + (CGGA)n Simple_repeat Simple_repeat 2 26 0 6 686 719 262 149 80 chr1 13292398 13292464 -183902968 + L1MA7 LINE L1 5623 5689 -602 6 686 903 252 19 5 chr1 13292464 13292671 -183902761 + B3 SINE B2 1 210 -6 6 686 719 262 149 80 chr1 13292671 13293230 -183902202 + L1MA7 LINE L1 5690 6291 0 6 686 450 0 0 0 chr1 13293319 13293369 -183902063 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 686 493 212 34 42 chr1 13294070 13294188 -183901244 + PB1D9 SINE Alu 3 119 -1 6 686 649 174 61 0 chr1 13294260 13294392 -183901040 + B1_Mus1 SINE Alu 2 141 -7 6 686 234 275 37 12 chr1 13294889 13294970 -183900462 + ID4_ SINE ID 1 83 0 6 686 33 0 0 0 chr1 13295934 13295967 -183899465 + AT_rich Low_complexity Low_complexity 1 33 0 6 686 443 257 28 0 chr1 13297674 13297783 -183897649 - PB1D9 SINE Alu -6 114 3 6 686 22 0 0 0 chr1 13297791 13297813 -183897619 + AT_rich Low_complexity Low_complexity 1 22 0 6 686 205 182 0 0 chr1 13299436 13299480 -183895952 + A-rich Low_complexity Low_complexity 1 44 0 6 686 341 207 70 47 chr1 13299629 13299715 -183895717 + B3 SINE B2 9 96 -120 6 686 207 0 0 0 chr1 13299832 13299855 -183895577 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 686 260 243 26 39 chr1 13299902 13299979 -183895453 + B1F2 SINE Alu 10 85 -64 6 686 443 229 109 44 chr1 13300223 13300360 -183895072 + B4A SINE B4 146 291 -1 6 686 238 364 52 7 chr1 13300689 13300844 -183894588 - MER2 DNA MER2_type -23 322 161 6 686 696 242 95 21 chr1 13300952 13301142 -183894290 + MTE2b LTR MaLR 12 215 -164 6 686 228 212 112 45 chr1 13301398 13301487 -183893945 + L1ME2 LINE L1 5844 5938 -226 6 686 387 190 35 12 chr1 13302172 13302257 -183893175 + B1F1 SINE Alu 12 98 -51 6 686 249 57 0 0 chr1 13302514 13302549 -183892883 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 686 566 274 24 18 chr1 13303320 13303487 -183891945 - B3A SINE B2 -30 168 1 6 686 252 0 0 0 chr1 13305422 13305450 -183889982 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 686 452 176 118 18 chr1 13305666 13305776 -183889656 + B1F2 SINE Alu 29 149 0 6 686 1178 54 0 26 chr1 13306251 13306402 -183889030 + B1_Mus2 SINE Alu 1 147 0 6 686 361 212 136 12 chr1 13306506 13306629 -183888803 - L1MB2 LINE L1 -118 6053 5925 6 686 383 211 48 9 chr1 13307397 13307502 -183887930 + B1_Mus1 SINE Alu 40 148 0 6 686 841 120 0 31 chr1 13308973 13309102 -183886330 + MurSatRep1 Unknown Unknown 612 736 -1401 6 686 6226 169 21 8 chr1 13309102 13310248 -183885184 + MurSatRep1 Unknown Unknown 943 2103 -34 6 686 339 85 0 0 chr1 13312768 13312815 -183882617 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 686 756 141 88 7 chr1 13313163 13313299 -183882133 - B1_Mur2 SINE Alu 0 149 3 6 686 1645 32 11 0 chr1 13314369 13314559 -183880873 + B2_Mm1t SINE B2 2 193 0 6 686 204 40 0 0 chr1 13314559 13314584 -183880848 + (A)n Simple_repeat Simple_repeat 1 25 0 6 686 1185 54 0 0 chr1 13316229 13316376 -183879056 - B1_Mus2 SINE Alu 0 147 1 6 686 465 274 67 19 chr1 13316902 13317110 -183878322 + MT2A LTR ERVL 172 389 -144 6 686 745 143 39 0 chr1 13317733 13317992 -183877440 + G-rich Low_complexity Low_complexity 1 269 0 6 686 23 54 0 0 chr1 13318189 13318226 -183877206 + AT_rich Low_complexity Low_complexity 1 37 0 6 686 1309 63 0 39 chr1 13318394 13318575 -183876857 - B2_Mm2 SINE B2 -19 176 3 6 686 222 286 14 28 chr1 13319598 13319670 -183875762 + ID4 SINE ID 13 83 0 6 686 393 39 0 0 chr1 13320390 13320441 -183874991 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 686 333 173 67 0 chr1 13320575 13320650 -183874782 + ID_B1 SINE B4 138 217 -7 6 686 210 167 82 20 chr1 13320608 13320657 -183874775 + PB1 SINE Alu 76 127 0 6 686 416 272 26 17 chr1 13320891 13321007 -183874425 + RSINE1 SINE B4 47 163 -2 6 686 21 71 0 0 chr1 13321018 13321060 -183874372 + AT_rich Low_complexity Low_complexity 1 42 0 6 686 189 312 47 0 chr1 13321570 13321634 -183873798 - L2a LINE L2 -18 3408 3342 6 686 435 167 0 0 chr1 13321689 13321761 -183873671 - BC1_Mm scRNA scRNA -80 72 1 6 686 358 274 160 13 chr1 13322801 13323098 -183872334 + L1M4 LINE L1 4394 4740 -1406 6 686 255 229 0 62 chr1 13323186 13323251 -183872181 + L1M4 LINE L1 4926 4986 -1160 6 686 1718 165 237 28 chr1 13323896 13323954 -183871478 - MT2B LTR ERVL 0 601 543 6 686 270 0 0 0 chr1 13323954 13323984 -183871448 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 686 1718 165 237 28 chr1 13323984 13324418 -183871014 - MT2B LTR ERVL -59 542 7 6 686 548 181 18 62 chr1 13324578 13324690 -183870742 - U6 snRNA snRNA 0 107 1 6 686 1482 54 0 0 chr1 13324930 13325116 -183870316 + L1Md_T LINE L1 6397 6582 0 6 686 237 217 129 14 chr1 13325133 13325203 -183870229 + ID2 SINE ID 1 78 -5 6 686 282 160 0 0 chr1 13325264 13325314 -183870118 + (CATA)n Simple_repeat Simple_repeat 2 51 0 6 686 1419 64 16 21 chr1 13325360 13325552 -183869880 + B2_Mm2 SINE B2 1 191 -4 6 686 981 83 13 59 chr1 13325787 13325940 -183869492 + B1_Mus1 SINE Alu 1 146 -2 6 686 442 237 60 67 chr1 13327190 13327339 -183868093 + B1_Mur1 SINE Alu 1 148 -1 6 686 467 198 138 16 chr1 13329551 13329674 -183865758 - B1_Mur3 SINE Alu -4 145 8 6 686 315 0 0 0 chr1 13331097 13331132 -183864300 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 686 389 209 309 0 chr1 13331336 13331446 -183863986 + B1_Mus1 SINE Alu 1 144 -4 6 686 223 269 30 0 chr1 13331465 13331532 -183863900 + ID4_ SINE ID 4 72 -11 6 686 806 193 68 55 chr1 13333656 13333875 -183861557 - ID_B1 SINE B4 0 224 3 6 686 284 274 47 9 chr1 13334456 13334563 -183860869 + PB1D7 SINE Alu 2 112 -8 6 686 1188 68 0 0 chr1 13334609 13334772 -183860660 + B2_Mm2 SINE B2 2 164 -31 6 686 834 64 0 0 chr1 13334788 13334897 -183860535 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 6 686 716 221 116 0 chr1 13335087 13335259 -183860173 + URR1B DNA MER1_type 34 225 0 6 686 389 273 58 0 chr1 13335635 13335756 -183859676 + ID_B1 SINE B4 92 219 -5 6 686 353 138 44 44 chr1 13335987 13336078 -183859354 + PB1D9 SINE Alu 30 120 0 6 686 1237 41 0 20 chr1 13336330 13336480 -183858952 + B1_Mus1 SINE Alu 2 148 0 6 686 779 183 35 0 chr1 13337845 13337987 -183857445 + B1_Mur4 SINE Alu 2 148 -2 6 686 2862 111 36 42 chr1 13338012 13338490 -183856942 - MT2C_Mm LTR ERVL 0 475 1 6 686 336 243 23 0 chr1 13338494 13338586 -183856846 + B1_Mm SINE Alu 3 98 -49 6 686 475 197 375 0 chr1 13338773 13338925 -183856507 - B3 SINE B2 -7 209 1 6 686 319 286 213 47 chr1 13339112 13339281 -183856151 + B4A SINE B4 3 199 -93 6 686 299 287 32 34 chr1 13339874 13340014 -183855418 - MER112 DNA MER1_type -120 141 4 6 686 1597 42 0 20 chr1 13341385 13341580 -183853852 + B2_Mm1a SINE B2 1 191 -2 6 686 186 71 0 0 chr1 13342024 13342052 -183853380 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 686 610 267 60 0 chr1 13342507 13342657 -183852775 - RSINE1 SINE B4 -2 163 5 6 686 289 302 50 16 chr1 13343120 13343241 -183852191 + ID_B1 SINE B4 92 216 -8 7 686 976 220 14 28 chr1 13343882 13344097 -183851335 - B3 SINE B2 -3 213 2 7 686 567 165 0 20 chr1 13344444 13344543 -183850889 - B1_Mus2 SINE Alu -49 98 2 7 686 322 288 45 53 chr1 13344677 13344809 -183850623 - ID_B1 SINE B4 -28 196 66 7 686 252 0 0 0 chr1 13344837 13344865 -183850567 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 7 686 551 207 56 28 chr1 13345297 13345441 -183849991 - B1_Mur4 SINE Alu -2 148 1 7 686 287 130 19 0 chr1 13345655 13345709 -183849723 + (GGA)n Simple_repeat Simple_repeat 2 56 0 7 686 1451 80 5 0 chr1 13345887 13346075 -183849357 - B2_Mm1t SINE B2 -4 189 1 7 686 1160 68 0 0 chr1 13347666 13347813 -183847619 - B1_Mus2 SINE Alu 0 147 1 7 686 378 0 0 0 chr1 13349317 13349359 -183846073 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 686 31 26 0 0 chr1 13349433 13349471 -183845961 + AT_rich Low_complexity Low_complexity 1 38 0 7 686 24 32 0 0 chr1 13349610 13349641 -183845791 + AT_rich Low_complexity Low_complexity 1 31 0 7 686 1128 66 0 0 chr1 13350048 13350184 -183845248 + B1_Mm SINE Alu 2 137 -10 7 686 507 33 0 0 chr1 13350184 13350245 -183845187 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 7 686 264 213 54 53 chr1 13350825 13350988 -183844444 + RLTR20B1 LTR ERVK 95 329 -199 7 686 249 211 0 0 chr1 13351768 13351825 -183843607 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 7 686 363 139 42 0 chr1 13351941 13352013 -183843419 + B1_Mur1 SINE Alu 74 148 -1 7 686 259 296 130 27 chr1 13352029 13352175 -183843257 + B3A SINE B2 2 162 -36 7 686 191 36 0 35 chr1 13353081 13353110 -183842322 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 686 233 238 12 59 chr1 13353112 13353197 -183842235 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 7 686 1387 90 0 21 chr1 13354268 13354460 -183840972 + B2_Mm2 SINE B2 1 188 -7 7 686 520 295 23 120 chr1 13354501 13354717 -183840715 - ID_B1 SINE B4 -23 201 7 7 686 595 224 14 20 chr1 13354782 13354928 -183840504 - B1_Mur1 SINE Alu -3 146 2 7 686 1060 207 14 14 chr1 13355880 13356091 -183839341 + B3 SINE B2 5 215 -1 7 686 285 242 0 0 chr1 13356226 13356288 -183839144 - ID4_ SINE ID -16 67 6 7 686 259 323 94 0 chr1 13356345 13356472 -183838960 - B1_Mus2 SINE Alu -7 140 2 7 686 21 71 0 0 chr1 13356529 13356571 -183838861 + AT_rich Low_complexity Low_complexity 1 42 0 7 686 587 301 80 22 chr1 13358325 13358600 -183836832 - B4A SINE B4 -1 291 1 7 686 1379 91 37 0 chr1 13359803 13359990 -183835442 + B2_Mm2 SINE B2 1 194 -1 7 686 25 0 0 0 chr1 13360508 13360533 -183834899 + AT_rich Low_complexity Low_complexity 1 25 0 7 686 1132 82 0 0 chr1 13361057 13361203 -183834229 + B1_Mus1 SINE Alu 3 148 0 7 686 294 29 0 0 chr1 13361782 13361817 -183833615 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 686 237 210 0 31 chr1 13362691 13362755 -183832677 + GA-rich Low_complexity Low_complexity 1 62 0 7 686 24 67 0 0 chr1 13363207 13363252 -183832180 + GC_rich Low_complexity Low_complexity 1 45 0 7 686 252 225 15 58 chr1 13363308 13363445 -183831987 + C-rich Low_complexity Low_complexity 5 135 0 7 686 25 31 0 0 chr1 13363902 13363934 -183831498 + GC_rich Low_complexity Low_complexity 1 32 0 7 686 24 0 0 0 chr1 13363968 13363992 -183831440 + GC_rich Low_complexity Low_complexity 1 24 0 7 686 213 39 0 0 chr1 13364164 13364190 -183831242 + (TCC)n Simple_repeat Simple_repeat 1 26 0 7 686 341 302 151 26 chr1 13365215 13365417 -183830015 - MIRb SINE MIR -14 248 25 7 686 388 263 139 21 chr1 13366506 13366700 -183828732 - MER44D DNA MER2_type -39 666 451 7 686 344 376 64 5 chr1 13366752 13366939 -183828493 - MER44D DNA MER2_type -483 222 25 7 686 1119 87 19 0 chr1 13367014 13367175 -183828257 - B2_Mm2 SINE B2 -31 164 1 7 686 30 0 0 0 chr1 13367177 13367207 -183828225 + AT_rich Low_complexity Low_complexity 1 30 0 7 686 454 261 34 17 chr1 13367261 13367378 -183828054 + ID_B1 SINE B4 61 179 -45 7 686 389 236 104 0 chr1 13367289 13367395 -183828037 + B1_Mur1 SINE Alu 6 122 -27 7 686 282 246 314 0 chr1 13367371 13367489 -183827943 + B3 SINE B2 56 210 -6 7 686 1488 70 0 0 chr1 13367512 13367698 -183827734 + B2_Mm1a SINE B2 1 186 -7 7 686 339 336 21 49 chr1 13367785 13367929 -183827503 - RSINE1 SINE B4 -22 143 4 7 686 454 297 47 78 chr1 13367954 13368250 -183827182 - B4A SINE B4 -4 288 2 7 686 198 0 0 0 chr1 13368255 13368277 -183827155 + (T)n Simple_repeat Simple_repeat 1 22 0 7 686 259 170 19 0 chr1 13368277 13368330 -183827102 - ID_B1 SINE B4 0 224 171 7 686 254 281 167 0 chr1 13368330 13368373 -183827059 - PB1D10 SINE Alu 0 117 6 7 686 527 175 43 26 chr1 13368726 13368843 -183826589 + PB1D9 SINE Alu 2 120 0 7 686 238 283 42 42 chr1 13368866 13368984 -183826448 + PB1D7 SINE Alu 1 118 -2 7 686 264 272 3 63 chr1 13369122 13369255 -183826177 - MIRc SINE MIR -67 209 82 7 687 777 132 14 56 chr1 13369951 13370095 -183825337 + B1_Mus2 SINE Alu 9 146 -1 7 687 669 66 0 0 chr1 13370115 13370206 -183825226 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 687 198 71 0 0 chr1 13371038 13371066 -183824366 + (T)n Simple_repeat Simple_repeat 1 28 0 7 687 919 138 35 0 chr1 13371066 13371211 -183824221 - B1_Mur4 SINE Alu 0 150 1 7 687 423 237 103 108 chr1 13371343 13371510 -183823922 + B3A SINE B2 3 165 -30 7 687 879 157 20 0 chr1 13371510 13371657 -183823775 + B1_Mur4 SINE Alu 1 150 0 7 687 297 237 103 108 chr1 13371657 13371683 -183823749 + B2_Mm2 SINE B2 166 195 0 7 687 577 269 0 78 chr1 13371791 13371944 -183823488 + B1_Mur2 SINE Alu 9 149 0 7 687 268 337 0 0 chr1 13371959 13372042 -183823390 - B1F SINE Alu -29 120 38 7 687 827 292 33 83 chr1 13372087 13372155 -183823277 - B4A SINE B4 -1 291 230 7 687 679 214 50 7 chr1 13372155 13372296 -183823136 - B1_Mur2 SINE Alu -1 148 2 7 687 827 292 33 83 chr1 13372296 13372529 -183822903 - B4A SINE B4 -63 229 5 7 687 500 221 67 30 chr1 13372723 13372927 -183822505 + L1M5 LINE L1 5257 5472 -699 7 687 688 172 309 12 chr1 13373108 13373273 -183822159 - B3 SINE B2 -2 214 1 7 687 286 337 29 58 chr1 13373703 13373876 -183821556 + L1M5 LINE L1 3980 4147 -1999 7 687 239 335 63 68 chr1 13373902 13374107 -183821325 + B4A SINE B4 15 218 -74 7 687 420 97 0 0 chr1 13374173 13374235 -183821197 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 687 303 191 223 32 chr1 13374247 13374404 -183821028 + L1M5 LINE L1 4177 4363 -1783 7 687 230 250 0 32 chr1 13375037 13375099 -183820333 + B1_Mus1 SINE Alu 1 60 -88 7 687 959 151 0 35 chr1 13375099 13375271 -183820161 + (CAGAGA)n Simple_repeat Simple_repeat 5 170 0 7 687 463 165 25 0 chr1 13375271 13375350 -183820082 + B1_Mur3 SINE Alu 42 122 -27 7 687 252 149 0 0 chr1 13375350 13375397 -183820035 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 687 343 330 63 50 chr1 13375409 13375596 -183819836 + L1ME3A LINE L1 5855 6038 -135 7 687 241 268 0 18 chr1 13375818 13375831 -183819601 - RSINE1 SINE B4 -108 57 2 7 687 300 91 0 0 chr1 13375831 13375875 -183819557 - B3A SINE B2 -154 44 1 7 687 310 283 74 16 chr1 13375976 13376098 -183819334 - L1MB4 LINE L1 -6 6174 6046 7 687 225 237 0 0 chr1 13376655 13376714 -183818718 + C-rich Low_complexity Low_complexity 3 61 0 7 687 203 233 0 0 chr1 13377147 13377190 -183818242 + L2c LINE L2 3343 3385 -2 7 687 716 249 222 16 chr1 13377461 13377767 -183817665 + ORR1D2 LTR MaLR 1 369 -1 7 687 636 223 159 6 chr1 13378009 13378185 -183817247 - B3 SINE B2 -7 209 7 7 687 297 295 107 79 chr1 13378224 13378552 -183816880 + MLT1A LTR MaLR 19 355 -19 7 687 400 211 30 58 chr1 13378774 13378900 -183816532 - MLT2D LTR ERVL -296 168 46 7 687 23 0 0 0 chr1 13379540 13379563 -183815869 + AT_rich Low_complexity Low_complexity 1 23 0 7 687 380 298 88 0 chr1 13379764 13379878 -183815554 + RSINE1 SINE B4 1 124 -41 7 687 507 17 0 0 chr1 13379878 13379938 -183815494 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 687 522 158 109 0 chr1 13380114 13380215 -183815217 - B1_Mur2 SINE Alu -1 148 37 7 687 267 232 0 35 chr1 13380166 13380224 -183815208 - MT2B LTR ERVL -361 240 185 7 687 244 192 19 0 chr1 13380281 13380333 -183815099 - B4A SINE B4 -124 168 116 7 687 225 298 40 47 chr1 13380375 13380523 -183814909 - ID_B1 SINE B4 -76 148 2 7 687 200 73 0 68 chr1 13380900 13380944 -183814488 + (T)n Simple_repeat Simple_repeat 1 41 0 7 687 696 87 13 26 chr1 13380945 13381099 -183814333 - RMER17A2 LTR ERVK -396 510 359 7 687 261 0 0 0 chr1 13381101 13381130 -183814302 + (T)n Simple_repeat Simple_repeat 1 29 0 7 687 231 321 275 0 chr1 13381159 13381268 -183814164 + B1F SINE Alu 6 144 -5 7 687 2676 169 57 26 chr1 13381281 13381810 -183813622 + RMER1B Other Other 522 1066 0 7 687 180 111 0 0 chr1 13381816 13381843 -183813589 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 687 251 267 119 68 chr1 13381914 13382091 -183813341 + ID_B1 SINE B4 23 208 -16 7 687 183 114 0 0 chr1 13382467 13382502 -183812930 + (CAA)n Simple_repeat Simple_repeat 1 35 0 7 687 1180 49 7 0 chr1 13382909 13383053 -183812379 + B1_Mus1 SINE Alu 2 146 -2 7 687 207 0 0 0 chr1 13383053 13383076 -183812356 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 687 624 262 43 21 chr1 13383330 13383517 -183811915 + B3A SINE B2 3 193 -5 8 687 615 92 10 10 chr1 13384191 13384290 -183811142 + B1_Mus2 SINE Alu 49 147 0 8 687 813 208 67 72 chr1 13384892 13385115 -183810317 + ID_B1 SINE B4 1 222 -2 8 687 369 0 0 0 chr1 13385122 13385163 -183810269 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 687 536 143 10 0 chr1 13385586 13385684 -183809748 + GA-rich Low_complexity Low_complexity 1 99 0 8 687 294 262 101 18 chr1 13386249 13386358 -183809074 + ID_B1 SINE B4 102 219 -5 8 687 276 30 0 0 chr1 13386365 13386398 -183809034 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 687 1113 270 119 52 chr1 13386516 13386993 -183808439 - RMER5 LTR ERV1 -25 509 1 8 687 617 174 73 29 chr1 13387209 13387345 -183808087 + B1_Mm SINE Alu 6 147 0 8 687 231 88 0 0 chr1 13387744 13387778 -183807654 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 687 570 143 71 0 chr1 13387778 13387876 -183807556 - B2_Mm2 SINE B2 -89 106 2 8 687 1331 246 26 28 chr1 13388184 13388536 -183806896 - ORR1D2 LTR MaLR -12 358 8 8 687 240 86 0 0 chr1 13388550 13388585 -183806847 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 687 202 61 61 0 chr1 13389034 13389067 -183806365 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 8 687 198 0 0 0 chr1 13389554 13389576 -183805856 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 687 1267 249 122 6 chr1 13390398 13390734 -183804698 + Lx6 LINE L1 7010 7384 -76 8 687 40 21 0 0 chr1 13390849 13390896 -183804536 + AT_rich Low_complexity Low_complexity 1 47 0 8 687 1095 90 7 0 chr1 13390931 13391076 -183804356 - B1_Mm SINE Alu -1 146 1 8 687 180 152 0 0 chr1 13391316 13391349 -183804083 + T-rich Low_complexity Low_complexity 1 33 0 8 687 1092 279 40 0 chr1 13391805 13392131 -183803301 - RMER5 LTR ERV1 0 534 196 8 687 376 239 120 0 chr1 13392131 13392223 -183803209 - B1F2 SINE Alu -14 135 33 8 687 577 248 20 20 chr1 13392223 13392375 -183803057 - RMER5 LTR ERV1 -336 198 47 8 687 757 142 14 0 chr1 13392479 13392620 -183802812 + CT-rich Low_complexity Low_complexity 1 143 0 8 687 999 105 28 0 chr1 13392670 13392813 -183802619 - B1_Mus1 SINE Alu 0 148 2 8 687 1307 61 44 6 chr1 13392915 13393096 -183802336 + B2_Mm2 SINE B2 2 189 -6 8 687 971 144 15 69 chr1 13393197 13393399 -183802033 + URR1B DNA MER1_type 35 225 0 8 687 702 237 26 0 chr1 13394392 13394548 -183800884 + B3A SINE B2 1 160 -38 8 687 37 39 0 0 chr1 13394585 13394636 -183800796 + AT_rich Low_complexity Low_complexity 1 51 0 8 687 195 211 33 66 chr1 13394736 13394797 -183800635 + L2a LINE L2 3364 3422 -4 8 687 695 152 21 64 chr1 13394814 13394955 -183800477 + B1_Mur4 SINE Alu 2 136 -14 8 687 369 0 0 0 chr1 13394957 13394998 -183800434 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 687 337 291 21 28 chr1 13395340 13395458 -183799974 - B1F2 SINE Alu -11 106 1 8 687 204 206 0 0 chr1 13395621 13395655 -183799777 + polypyrimidine Low_complexity Low_complexity 3 36 0 8 687 212 267 47 0 chr1 13395685 13395771 -183799661 - B1F1 SINE Alu -58 91 2 8 687 564 276 11 54 chr1 13396335 13396519 -183798913 - B3A SINE B2 -16 182 7 8 687 699 186 269 0 chr1 13396623 13396790 -183798642 + B3 SINE B2 1 212 -4 8 687 264 77 0 0 chr1 13396791 13396830 -183798602 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 8 687 218 32 0 31 chr1 13396945 13396977 -183798455 + (TTA)n Simple_repeat Simple_repeat 2 32 0 8 687 226 196 0 0 chr1 13397078 13397124 -183798308 - Tigger5 DNA MER2_type -725 1681 1636 8 687 629 271 129 43 chr1 13397861 13398139 -183797293 - MTE2b LTR MaLR -75 304 3 8 687 1256 83 0 4 chr1 13398159 13398390 -183797042 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 8 687 363 150 45 29 chr1 13398396 13398481 -183796951 - B1_Mur2 SINE Alu -17 130 31 8 687 968 112 17 197 chr1 13398492 13398726 -183796706 - B2_Mm1t SINE B2 0 193 2 8 687 201 39 0 0 chr1 13399336 13399362 -183796070 + (T)n Simple_repeat Simple_repeat 1 26 0 8 687 1130 82 0 0 chr1 13399362 13399508 -183795924 - B1_Mus2 SINE Alu 0 147 2 8 687 704 258 121 5 chr1 13400694 13400893 -183794539 + ID_B1 SINE B4 3 224 0 8 687 570 268 168 24 chr1 13401118 13401458 -183793974 + L1MA4A LINE L1 5533 5921 -382 8 687 1141 285 33 35 chr1 13401474 13401841 -183793591 - MTEa LTR MaLR -13 366 1 8 687 322 183 0 0 chr1 13402156 13402216 -183793216 - PB1D10 SINE Alu -49 68 9 8 687 315 250 24 12 chr1 13402216 13402241 -183793191 - ID_B1 SINE B4 -75 149 64 8 687 463 264 0 18 chr1 13402491 13402603 -183792829 - PB1D7 SINE Alu -10 110 1 8 687 28 71 0 0 chr1 13402727 13402783 -183792649 + AT_rich Low_complexity Low_complexity 1 56 0 8 687 1191 62 0 0 chr1 13402962 13403106 -183792326 - B1_Mus2 SINE Alu -2 145 2 8 687 233 234 0 0 chr1 13403530 13403577 -183791855 + GA-rich Low_complexity Low_complexity 1 47 0 8 687 293 0 27 0 chr1 13404014 13404051 -183791381 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 687 728 83 211 0 chr1 13404051 13404160 -183791272 - B1_Mus2 SINE Alu -13 134 3 8 687 228 317 37 0 chr1 13404632 13404714 -183790718 - Lx8 LINE L1 -1583 5890 5806 8 687 324 211 41 21 chr1 13404721 13404818 -183790614 - L1M2 LINE L1 -493 5798 5700 8 687 321 327 0 0 chr1 13405035 13405139 -183790293 + (CA)n Simple_repeat Simple_repeat 1 104 0 8 687 236 185 21 32 chr1 13405147 13405242 -183790190 + (CATA)n Simple_repeat Simple_repeat 3 96 0 8 687 365 352 43 0 chr1 13405425 13405564 -183789868 - B4 SINE B4 -146 146 2 8 687 257 217 14 14 chr1 13406338 13406408 -183789024 + T-rich Low_complexity Low_complexity 5 74 0 8 687 649 245 51 46 chr1 13407087 13407284 -183788148 - B3A SINE B2 0 198 1 8 687 214 317 23 77 chr1 13408217 13408347 -183787085 - L2c LINE L2 -13 3374 3252 8 687 1974 148 0 133 chr1 13408363 13408822 -183786610 + RMER10B LTR ERVL 1 398 0 8 687 230 265 39 48 chr1 13409414 13409517 -183785915 - L3b LINE CR1 -225 257 156 8 687 1224 74 97 0 chr1 13409970 13410145 -183785287 - B2_Mm1t SINE B2 0 193 2 8 687 459 215 84 0 chr1 13410205 13410312 -183785120 - B3A SINE B2 -81 117 2 8 687 230 308 15 0 chr1 13410322 13410387 -183785045 - ID2 SINE ID -1 82 17 8 687 1862 189 153 22 chr1 13410949 13411752 -183783680 - Lx5 LINE L1 0 7050 6143 8 687 297 0 0 0 chr1 13411943 13411976 -183783456 + (ATG)n Simple_repeat Simple_repeat 3 35 0 8 687 360 0 0 0 chr1 13411976 13412016 -183783416 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 687 467 308 23 0 chr1 13412442 13412575 -183782857 + RSINE1 SINE B4 29 164 -1 8 687 61 37 0 0 chr1 13412575 13412657 -183782775 + AT_rich Low_complexity Low_complexity 1 82 0 8 687 625 234 0 0 chr1 13412843 13412971 -183782461 - ID_B1 SINE B4 -19 205 78 8 687 271 325 60 0 chr1 13413021 13413104 -183782328 - PB1D10 SINE Alu -20 97 10 8 687 284 328 118 0 chr1 13413171 13413290 -183782142 - B1F SINE Alu -16 133 1 8 687 605 219 49 0 chr1 13413300 13413423 -183782009 - B1_Mm SINE Alu -1 146 18 8 687 637 270 98 27 chr1 13413447 13413630 -183781802 - B3A SINE B2 -2 196 1 8 687 450 0 0 0 chr1 13414311 13414361 -183781071 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 8 687 1281 31 0 0 chr1 13414361 13414522 -183780910 - B2_Mm2 SINE B2 -34 161 1 8 687 1321 227 88 40 chr1 13414608 13414961 -183780471 - ORR1D2 LTR MaLR 0 370 1 8 687 383 155 69 25 chr1 13414965 13415124 -183780308 + (CA)n Simple_repeat Simple_repeat 2 167 0 8 687 1035 267 59 12 chr1 13415163 13415349 -183780083 + L1MD2 LINE L1 5639 5828 -531 8 687 279 0 0 0 chr1 13415349 13415380 -183780052 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 687 1035 267 59 12 chr1 13415380 13415515 -183779917 + L1MD2 LINE L1 5829 5975 -384 8 687 453 308 116 21 chr1 13415578 13415820 -183779612 + L1MD2 LINE L1 6072 6336 -23 8 687 240 59 0 0 chr1 13416317 13416351 -183779081 + (CGGGG)n Simple_repeat Simple_repeat 1 34 0 8 687 198 0 0 0 chr1 13416398 13416420 -183779012 + (T)n Simple_repeat Simple_repeat 1 22 0 8 687 463 276 8 8 chr1 13416827 13416944 -183778488 - ID_B1 SINE B4 -99 125 9 8 687 481 271 27 34 chr1 13417099 13417248 -183778184 - RSINE1 SINE B4 -13 152 5 8 687 306 294 0 11 chr1 13417272 13417365 -183778067 - PB1 SINE Alu -15 112 21 8 687 554 282 25 68 chr1 13417500 13417736 -183777696 - B4A SINE B4 -58 234 9 8 687 189 0 0 0 chr1 13417939 13417960 -183777472 + (A)n Simple_repeat Simple_repeat 1 21 0 8 687 836 182 0 6 chr1 13419717 13419894 -183775538 + CT-rich Low_complexity Low_complexity 3 178 0 8 687 7664 54 3 5 chr1 13419901 13420832 -183774600 - L1_Mus1 LINE L1 -1 6566 5638 8 687 13113 92 12 2 chr1 13420824 13422628 -183772804 + L1_Mus1 LINE L1 3835 5657 -226 8 687 731 127 16 0 chr1 13422630 13422756 -183772676 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 8 687 2955 203 74 22 chr1 13422807 13423481 -183771951 - Lx7 LINE L1 -282 7414 6706 8 687 256 153 24 48 chr1 13423624 13423748 -183771684 + (CAGA)n Simple_repeat Simple_repeat 4 124 0 8 687 711 0 0 0 chr1 13424439 13424518 -183770914 + (TTTTC)n Simple_repeat Simple_repeat 1 79 0 8 687 887 73 0 8 chr1 13424520 13424645 -183770787 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 8 687 1010 111 24 18 chr1 13424663 13424828 -183770604 - B2_Mm1t SINE B2 -26 167 2 8 687 3126 42 0 0 chr1 13425495 13425852 -183769580 - IAPEY2_LTR LTR ERVK 0 357 1 8 687 1147 184 78 48 chr1 13426191 13426459 -183768973 + MTD LTR MaLR 2 277 -142 9 687 470 156 152 28 chr1 13427159 13427304 -183768128 + L1M4 LINE L1 5222 5384 -762 9 687 276 30 0 0 chr1 13427470 13427503 -183767929 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 687 751 170 14 7 chr1 13427515 13427663 -183767769 - B1_Mur3 SINE Alu 0 149 1 9 687 222 62 0 0 chr1 13428440 13428472 -183766960 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 687 886 132 13 0 chr1 13428666 13428825 -183766607 + (GA)n Simple_repeat Simple_repeat 2 162 0 9 687 334 281 0 24 chr1 13429852 13429936 -183765496 + RSINE1 SINE B4 45 126 -39 9 687 242 360 107 7 chr1 13430003 13430143 -183765289 + ID_B1 SINE B4 29 182 -42 9 687 988 116 0 0 chr1 13430563 13430709 -183764723 + B1_Mus2 SINE Alu 2 147 0 9 687 248 50 0 70 chr1 13430709 13430752 -183764680 + (A)n Simple_repeat Simple_repeat 1 40 0 9 687 248 272 18 0 chr1 13430939 13431053 -183764379 + (TATATG)n Simple_repeat Simple_repeat 5 120 0 9 687 762 267 64 24 chr1 13431059 13431354 -183764078 - Lx7 LINE L1 -1793 5903 5597 9 687 295 284 17 60 chr1 13431422 13431538 -183763894 - BC1_Mm scRNA scRNA -40 112 2 9 687 351 0 0 0 chr1 13433254 13433293 -183762139 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 687 536 295 65 16 chr1 13433348 13433534 -183761898 - B3A SINE B2 -3 195 1 9 687 241 307 107 30 chr1 13433545 13433676 -183761756 - B1F2 SINE Alu -8 141 1 9 687 1319 209 23 8 chr1 13434809 13435065 -183760367 - MERVL_2A-int LTR ERVL -3487 2274 2015 9 687 2114 141 24 32 chr1 13435071 13435393 -183760039 + ORR1C1 LTR MaLR 6 336 -42 9 687 1611 36 5 5 chr1 13435393 13435586 -183759846 + B2_Mm1a SINE B2 1 193 0 9 687 2114 141 24 32 chr1 13435586 13435638 -183759794 + ORR1C1 LTR MaLR 337 377 -1 9 687 1020 176 124 0 chr1 13435641 13435851 -183759581 - MERVL_2A-int LTR ERVL -3745 2016 1781 9 687 456 19 0 0 chr1 13436455 13436508 -183758924 + (CACCAT)n Simple_repeat Simple_repeat 4 56 0 9 687 201 331 7 29 chr1 13436536 13436673 -183758759 + CT-rich Low_complexity Low_complexity 1 134 0 9 687 363 96 0 0 chr1 13436810 13436862 -183758570 + (GGA)n Simple_repeat Simple_repeat 2 53 0 9 687 3877 167 114 10 chr1 13436938 13437674 -183757758 - MERVL_2A-int LTR ERVL -3970 1791 978 9 687 1137 111 60 6 chr1 13437674 13437856 -183757576 + B2_Mm1a SINE B2 1 192 -1 9 687 3877 167 114 10 chr1 13437856 13437899 -183757533 - MERVL_2A-int LTR ERVL -4784 977 932 9 687 617 121 22 0 chr1 13437894 13437985 -183757447 - MERVL_2A-int LTR ERVL -5005 756 664 9 687 921 226 158 28 chr1 13437985 13438340 -183757092 + RMER16 LTR ERVK 1 533 0 9 687 833 96 8 0 chr1 13438374 13438499 -183756933 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 9 687 2238 197 35 84 chr1 13438508 13438956 -183756476 - MERVL_2A-int LTR ERVL -5185 576 122 9 687 1246 48 0 0 chr1 13438956 13439103 -183756329 + B1_Mm SINE Alu 1 147 0 9 687 2238 197 35 84 chr1 13439103 13439247 -183756185 - MERVL_2A-int LTR ERVL -5640 121 13 9 687 386 296 26 69 chr1 13439247 13439434 -183755998 - MT2A LTR ERVL -59 525 305 9 687 27 0 0 0 chr1 13439496 13439523 -183755909 + AT_rich Low_complexity Low_complexity 1 27 0 9 687 2045 146 67 10 chr1 13440669 13441056 -183754376 + MTC LTR MaLR 12 420 -1 9 687 382 234 98 39 chr1 13441059 13441264 -183754168 - L1MB3 LINE L1 -28 6155 5939 9 687 455 241 149 0 chr1 13441506 13441647 -183753785 + MER2 DNA MER2_type 117 278 -67 9 687 251 28 28 0 chr1 13441882 13441918 -183753514 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 9 687 380 213 8 23 chr1 13442356 13442486 -183752946 + GA-rich Low_complexity Low_complexity 3 130 0 9 687 3336 50 0 8 chr1 13442646 13443045 -183752387 - MTA_Mm LTR MaLR 0 396 1 9 687 6364 72 40 76 chr1 13443045 13444123 -183751309 - MTA_Mm-int LTR MaLR 0 1098 60 9 687 403 230 7 7 chr1 13444252 13444392 -183751040 + GA-rich Low_complexity Low_complexity 1 140 0 9 687 186 167 0 0 chr1 13444581 13444617 -183750815 + A-rich Low_complexity Low_complexity 2 37 0 9 687 474 293 113 7 chr1 13445169 13445320 -183750112 + MTE2b LTR MaLR 9 175 -204 9 687 316 276 84 66 chr1 13445170 13445337 -183750095 + MT2A LTR ERVL 10 179 -354 9 687 323 269 0 13 chr1 13445394 13445473 -183749959 - ID4 SINE ID 0 83 6 9 687 250 290 75 11 chr1 13445480 13445574 -183749858 - PB1D10 SINE Alu -2 118 19 9 687 706 204 12 77 chr1 13446051 13446221 -183749211 - RSINE1 SINE B4 0 165 7 9 687 215 286 114 0 chr1 13446585 13446655 -183748777 + ID4_ SINE ID 2 79 -4 9 687 3518 95 89 19 chr1 13447083 13447610 -183747822 + LTRIS2 LTR ERV1 1 564 0 9 687 948 160 90 11 chr1 13448171 13448360 -183747072 + RMER16-int LTR ERVK 141 344 -5062 9 687 3294 88 11 2 chr1 13448329 13448775 -183746657 + RMER16-int LTR ERVK 679 1128 -4278 9 687 2480 183 96 105 chr1 13448766 13449761 -183745671 + RLTR1B-int LTR ERV1 1116 2003 -1296 9 687 1334 180 0 20 chr1 13449769 13450024 -183745408 - L1VL1 LINE L1 -6172 250 1 9 687 1868 95 4 4 chr1 13450024 13450298 -183745134 + LTRIS2 LTR ERV1 291 564 0 9 687 673 165 25 0 chr1 13450313 13450434 -183744998 + B1_Mur3 SINE Alu 25 148 -1 9 687 364 267 0 22 chr1 13450649 13450753 -183744679 + B1F SINE Alu 9 109 -40 9 687 1813 147 86 3 chr1 13450754 13450917 -183744515 + ORR1C2 LTR MaLR 7 187 -197 9 687 282 123 0 0 chr1 13450917 13450974 -183744458 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 9 687 1813 147 86 3 chr1 13450974 13451159 -183744273 + ORR1C2 LTR MaLR 188 383 -1 9 687 281 223 72 31 chr1 13451334 13451425 -183744007 + MER58A DNA MER1_type 19 114 -110 9 687 1025 121 6 0 chr1 13451425 13451599 -183743833 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 9 687 328 296 65 13 chr1 13451998 13452152 -183743280 - MLT2B5 LTR ERVL -389 328 167 9 687 305 310 6 132 chr1 13452000 13452182 -183743250 - MTEa LTR MaLR -196 183 25 9 687 3895 86 34 18 chr1 13452270 13452825 -183742607 - LTRIS2 LTR ERV1 0 564 1 9 687 2150 151 56 0 chr1 13453042 13453400 -183742032 + ORR1C1 LTR MaLR 1 378 0 9 687 475 136 27 18 chr1 13453960 13454072 -183741360 + CT-rich Low_complexity Low_complexity 2 114 0 9 687 817 241 36 0 chr1 13454072 13454267 -183741165 - B3 SINE B2 -10 206 5 9 687 24 0 0 0 chr1 13454280 13454304 -183741128 + AT_rich Low_complexity Low_complexity 1 24 0 9 687 1046 98 0 14 chr1 13454497 13454642 -183740790 - B1_Mus1 SINE Alu -1 147 5 9 687 261 0 0 0 chr1 13455096 13455125 -183740307 + (A)n Simple_repeat Simple_repeat 1 29 0 9 687 29 60 0 0 chr1 13456284 13456334 -183739098 + AT_rich Low_complexity Low_complexity 1 50 0 9 687 664 264 21 3 chr1 13456361 13456562 -183738870 - B3A SINE B2 -13 203 5 9 687 767 210 169 62 chr1 13456628 13456756 -183738676 - Lx9 LINE L1 -8 7636 7505 9 687 234 0 0 0 chr1 13456756 13456782 -183738650 + (GA)n Simple_repeat Simple_repeat 1 26 0 9 687 767 210 169 62 chr1 13456782 13456978 -183738454 - Lx9 LINE L1 -140 7504 7279 9 687 618 250 0 0 chr1 13458881 13459009 -183736423 + ORR1E LTR MaLR 11 138 -221 9 687 487 253 10 128 chr1 13459035 13459120 -183736312 + ORR1E LTR MaLR 205 287 -92 9 687 1135 182 18 9 chr1 13459120 13459342 -183736090 + URR1B DNA MER1_type 2 225 0 9 687 487 253 10 128 chr1 13459342 13459394 -183736038 + ORR1E LTR MaLR 288 319 -60 9 687 1510 68 0 5 chr1 13459394 13459585 -183735847 - B2_Mm2 SINE B2 -4 191 2 9 687 487 253 10 128 chr1 13459585 13459641 -183735791 + ORR1E LTR MaLR 320 376 -3 9 687 331 182 0 57 chr1 13459717 13459787 -183735645 + B3A SINE B2 84 149 -49 9 687 446 325 58 0 chr1 13459861 13460015 -183735417 - MER20 DNA MER1_type -31 188 26 9 687 326 16 15 76 chr1 13460597 13460663 -183734769 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 9 687 519 17 0 0 chr1 13460816 13460876 -183734556 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 9 687 827 156 0 14 chr1 13460894 13461037 -183734395 - B1_Mus2 SINE Alu 0 147 7 9 687 870 189 301 37 chr1 13461164 13461460 -183733972 + ORR1D1 LTR MaLR 1 374 0 9 687 227 289 22 22 chr1 13461498 13461590 -183733842 - ORR1D2 LTR MaLR 0 370 279 9 687 3329 48 2 0 chr1 13461998 13462393 -183733039 + MTA_Mm LTR MaLR 1 396 0 9 687 807 183 0 0 chr1 13462450 13462581 -183732851 + B1_Mus1 SINE Alu 11 141 -7 9 687 33893 73 2 4 chr1 13462589 13467916 -183727516 + L1Md_F2 LINE L1 272 5586 -297 9 687 8100 36 6 28 chr1 13467916 13468922 -183726510 + L1Md_F2 LINE L1 5587 6570 -12 9 687 9433 204 61 56 chr1 13468950 13469199 -183726233 - Lx7 LINE L1 -1789 5907 5666 9 687 260 240 0 0 chr1 13469199 13469249 -183726183 + B1_Mur4 SINE Alu 1 50 -100 9 687 9433 204 61 56 chr1 13469249 13469875 -183725557 - Lx7 LINE L1 -1789 5665 5056 9 687 824 133 88 7 chr1 13469875 13470011 -183725421 + B1_Mus1 SINE Alu 1 147 -1 9 687 9433 172 62 42 chr1 13470011 13470721 -183724711 - Lx7 LINE L1 -793 5087 4437 9 687 1188 61 0 0 chr1 13470721 13470868 -183724564 - B1_Mm SINE Alu 0 147 1 9 687 9433 205 67 59 chr1 13470868 13471937 -183723495 - Lx7 LINE L1 -1444 4436 3206 9 687 183 42 0 0 chr1 13471974 13471998 -183723434 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 687 281 254 45 0 chr1 13472000 13472067 -183723365 - ID_B1 SINE B4 -11 213 144 9 687 263 227 0 0 chr1 13472147 13472213 -183723219 - L1M4 LINE L1 -753 5431 5366 9 687 1264 34 0 0 chr1 13472258 13472405 -183723027 - B1_Mus2 SINE Alu 0 147 1 9 687 398 240 18 54 chr1 13472426 13472564 -183722868 + L1M2 LINE L1 3568 3701 -2445 9 687 1995 181 24 11 chr1 13472565 13472944 -183722488 - ORR1C2 LTR MaLR 0 384 1 9 687 233 269 0 15 chr1 13473009 13473077 -183722355 + L1M2 LINE L1 3713 3779 -2364 9 687 262 200 15 15 chr1 13473190 13473256 -183722176 + (TTA)n Simple_repeat Simple_repeat 1 66 0 9 687 261 0 0 0 chr1 13473262 13473291 -183722141 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 687 506 289 51 132 chr1 13473402 13473501 -183721931 - B4A SINE B4 -5 287 201 9 687 1046 103 7 0 chr1 13473501 13473646 -183721786 + B1_Mus1 SINE Alu 3 148 0 9 687 506 289 51 132 chr1 13473646 13473841 -183721591 - B4A SINE B4 -92 200 17 9 687 195 114 0 0 chr1 13473849 13473884 -183721548 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 9 687 496 205 62 0 chr1 13473884 13473996 -183721436 - B1F2 SINE Alu -1 148 30 9 687 451 241 0 72 chr1 13474017 13474070 -183721362 - PB1D10 SINE Alu 0 117 19 9 687 222 214 0 136 chr1 13474070 13474118 -183721314 - B4A SINE B4 -143 149 104 9 687 2109 100 26 62 chr1 13474118 13474459 -183720973 - ORR1A4 LTR MaLR 0 329 1 9 687 451 241 0 72 chr1 13474459 13474482 -183720950 - PB1D10 SINE Alu -99 18 2 9 687 358 267 51 8 chr1 13475497 13475614 -183719818 - MER2B DNA MER2_type -35 301 180 9 687 745 235 80 5 chr1 13475638 13475826 -183719606 - B3 SINE B2 -12 204 3 9 687 1001 104 18 6 chr1 13476453 13476618 -183718814 + URR1A DNA MER1_type 58 224 -2 1 687 236 304 136 14 chr1 13476766 13476906 -183718526 + RMER10A LTR ERVL 261 417 -25 1 687 203 330 97 9 chr1 13478309 13478422 -183717010 - MIR SINE MIR -105 157 35 1 687 309 51 0 0 chr1 13478683 13478722 -183716710 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 687 250 359 10 0 chr1 13479273 13479376 -183716056 - Kanga1a DNA Tc2 -650 104 1 1 687 207 100 0 0 chr1 13479852 13479882 -183715550 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 687 265 158 184 0 chr1 13480698 13480774 -183714658 + MTD LTR MaLR 298 387 -32 1 687 1050 94 88 0 chr1 13480783 13480953 -183714479 + ORR1A2 LTR MaLR 126 310 -17 1 687 270 0 0 0 chr1 13481049 13481079 -183714353 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 687 257 268 115 11 chr1 13481138 13481225 -183714207 + B1_Mur1 SINE Alu 54 149 0 1 687 663 310 70 47 chr1 13481318 13481751 -183713681 - L1M5 LINE L1 -359 5814 5367 1 687 879 144 7 20 chr1 13481751 13481900 -183713532 - B1_Mus1 SINE Alu -1 147 1 1 687 663 310 70 47 chr1 13481900 13481980 -183713452 - L1M5 LINE L1 -807 5366 5289 1 687 828 127 306 0 chr1 13481988 13482161 -183713271 + URR1A DNA MER1_type 1 226 0 1 687 310 233 56 0 chr1 13482190 13482280 -183713152 - L1M5 LINE L1 -935 5211 5117 1 687 387 0 0 0 chr1 13482283 13482326 -183713106 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 687 217 303 13 38 chr1 13482429 13482508 -183712924 - BC1_Mm scRNA scRNA -64 88 12 1 687 334 254 75 23 chr1 13482536 13482669 -183712763 - B1F SINE Alu -8 141 2 1 687 198 143 0 0 chr1 13482823 13482858 -183712574 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 687 970 134 0 22 chr1 13483268 13483490 -183711942 + CT-rich Low_complexity Low_complexity 1 217 0 1 687 808 176 16 0 chr1 13483506 13483631 -183711801 - B1_Mur1 SINE Alu -18 131 5 1 687 23 33 0 0 chr1 13483685 13483715 -183711717 + AT_rich Low_complexity Low_complexity 1 30 0 1 687 207 276 17 0 chr1 13485553 13485611 -183709821 + CT-rich Low_complexity Low_complexity 1 59 0 1 687 991 223 24 9 chr1 13485631 13485844 -183709588 - B3 SINE B2 0 216 1 1 687 345 182 114 95 chr1 13485996 13486035 -183709397 - L1MC LINE L1 -2147 3999 3963 1 687 784 148 54 47 chr1 13486035 13486184 -183709248 - B1_Mur4 SINE Alu 0 150 1 1 687 345 182 114 95 chr1 13486184 13486302 -183709130 - L1MC LINE L1 -2184 3962 3839 1 687 308 244 47 0 chr1 13486693 13486779 -183708653 + B4A SINE B4 193 282 -10 1 687 1159 69 7 0 chr1 13486927 13487072 -183708360 + B1_Mus2 SINE Alu 2 147 0 1 687 269 276 69 0 chr1 13487149 13487236 -183708196 + PB1D10 SINE Alu 11 103 -14 1 687 496 210 160 0 chr1 13487362 13487481 -183707951 - B1_Mus1 SINE Alu -6 142 5 1 687 484 271 101 57 chr1 13487682 13487999 -183707433 - L1MB8 LINE L1 -61 6117 5787 1 687 279 0 0 0 chr1 13488610 13488641 -183706791 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 687 332 308 63 0 chr1 13488645 13488809 -183706623 - L1MB8 LINE L1 -521 5657 5485 1 687 788 178 0 22 chr1 13489018 13489202 -183706230 + CT-rich Low_complexity Low_complexity 1 180 0 1 687 263 100 0 24 chr1 13489203 13489244 -183706188 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1 687 905 135 9 15 chr1 13489248 13489582 -183705850 + CT-rich Low_complexity Low_complexity 1 331 0 1 687 430 216 117 0 chr1 13489582 13489693 -183705739 - B1_Mus2 SINE Alu -21 126 3 1 687 702 241 0 7 chr1 13490566 13490712 -183704720 - RSINE1 SINE B4 -19 146 2 1 687 468 248 8 24 chr1 13491158 13491282 -183704150 + PB1 SINE Alu 4 125 -2 1 687 359 342 0 34 chr1 13491914 13492032 -183703400 - PB1D10 SINE Alu 0 117 4 1 687 216 0 0 0 chr1 13492036 13492060 -183703372 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 687 1881 115 109 70 chr1 13492115 13492518 -183702914 + RLTR23 LTR ERV1 12 430 0 1 687 330 191 11 56 chr1 13492729 13492818 -183702614 - B3 SINE B2 0 216 132 1 687 1991 159 31 16 chr1 13493452 13493895 -183701537 + Lx5 LINE L1 918 1376 -4501 1 687 2453 101 3 70 chr1 13493895 13494280 -183701152 + RLTR10D LTR ERVK 1 359 0 1 687 1286 150 4 31 chr1 13494280 13494365 -183701067 + Lx5 LINE L1 1377 1456 -4421 1 687 9851 143 65 6 chr1 13494360 13496881 -183698551 + Lx5 LINE L1 4145 6820 -230 1 687 2608 116 28 10 chr1 13496892 13497285 -183698147 - RLTR9D LTR ERVK -3 400 1 1 687 369 113 40 40 chr1 13497286 13497360 -183698072 - ETnERV2-int LTR ERVK -2 7404 7331 1 687 15649 130 11 28 chr1 13497574 13499957 -183695475 - ETnERV2-int LTR ERVK -981 6425 4083 1 85 2218 288 31 19 chr1 13500033 13500809 -183694623 - ETnERV-int LTR ERVK -2942 3225 2441 1 688 4129 93 26 19 chr1 13500817 13501400 -183694032 - LTRIS_Mus LTR ERV1 0 587 1 2 688 9121 182 36 60 chr1 13501400 13505078 -183690354 - MuRRS-int LTR ERV1 0 4690 2 2 688 4257 92 3 25 chr1 13505078 13505678 -183689754 - LTRIS_Mus LTR ERV1 0 587 1 2 688 1833 301 57 59 chr1 13505684 13506126 -183689306 - ETnERV-int LTR ERVK -3769 2398 1659 1 688 1564 37 5 20 chr1 13506126 13506321 -183689111 + B2_Mm1a SINE B2 2 193 0 3 688 6449 245 34 32 chr1 13506321 13508367 -183687065 - ETnERV-int LTR ERVK -4179 1988 3 1 688 2545 135 20 10 chr1 13508375 13508771 -183686661 - RLTR9D LTR ERVK -3 400 1 1 688 693 276 98 0 chr1 13508775 13508989 -183686443 + Lx5 LINE L1 6812 7046 -4 4 688 463 252 30 52 chr1 13509011 13509145 -183686287 - B3 SINE B2 -84 132 2 5 688 388 296 26 28 chr1 13509367 13509501 -183685931 + B1_Mur1 SINE Alu 17 148 -1 6 688 366 181 84 0 chr1 13509540 13509623 -183685809 + B3A SINE B2 3 92 -106 7 688 2133 207 51 32 chr1 13509635 13510164 -183685268 + MYSERV-int LTR ERVK 5912 6450 -100 8 688 1094 76 14 0 chr1 13510189 13510333 -183685099 - B1_Mm SINE Alu 0 147 2 9 688 386 224 18 27 chr1 13510335 13510445 -183684987 + MYSERV-int LTR ERVK 6440 6548 -2 8 688 2765 165 45 6 chr1 13510447 13510954 -183684478 + RLTR11A2 LTR ERVK 1 527 0 8 688 420 309 0 42 chr1 13511028 13511170 -183684262 + MLT1A LTR MaLR 23 158 -216 1 688 663 150 150 0 chr1 13511227 13511354 -183684078 + B1_Mus2 SINE Alu 1 146 -1 1 688 1216 41 0 26 chr1 13511432 13511583 -183683849 - B1_Mus1 SINE Alu 0 148 2 1 688 589 220 193 22 chr1 13512290 13512471 -183682961 - B3 SINE B2 -1 215 4 1 688 499 183 29 0 chr1 13512628 13512732 -183682700 + (TATG)n Simple_repeat Simple_repeat 4 110 0 1 688 723 206 0 0 chr1 13512733 13512913 -183682519 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 688 1029 243 45 4 chr1 13513122 13513403 -183682029 - MTD LTR MaLR -75 344 6 1 688 212 162 27 0 chr1 13513686 13513723 -183681709 + B1_Mus1 SINE Alu 2 39 -109 1 688 446 285 67 44 chr1 13514963 13515143 -183680289 + MTE2a LTR MaLR 2 185 -194 1 688 1881 200 32 12 chr1 13515330 13515735 -183679697 - RLTR9B2 LTR ERVK -7 413 1 1 688 226 261 53 32 chr1 13515735 13515826 -183679606 + RMER20A LTR ERVK 279 371 -145 2 688 653 212 82 36 chr1 13516299 13516390 -183679042 + MTE2a LTR MaLR 172 266 -113 1 688 414 0 0 0 chr1 13516390 13516436 -183678996 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 688 653 212 82 36 chr1 13516436 13516540 -183678892 + MTE2a LTR MaLR 267 375 -4 1 688 243 304 43 14 chr1 13516586 13516656 -183678776 - ID4_ SINE ID -9 74 3 2 688 198 128 0 0 chr1 13517656 13517695 -183677737 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 688 1080 111 62 23 chr1 13517725 13517901 -183677531 + B2_Mm2 SINE B2 4 186 -9 2 688 305 24 24 0 chr1 13518334 13518376 -183677056 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 688 22 35 0 0 chr1 13519127 13519156 -183676276 + AT_rich Low_complexity Low_complexity 1 29 0 2 688 576 134 70 0 chr1 13519214 13519333 -183676099 - B1_Mur2 SINE Alu -1 148 20 2 688 382 257 89 27 chr1 13519391 13519503 -183675929 + PB1D9 SINE Alu 1 119 -1 2 688 373 313 94 77 chr1 13520061 13520296 -183675136 + B4A SINE B4 46 284 -8 2 688 464 156 9 0 chr1 13520425 13520534 -183674898 + (CA)n Simple_repeat Simple_repeat 1 110 0 3 688 220 179 0 67 chr1 13520822 13520882 -183674550 - L3b LINE CR1 -415 67 12 3 688 699 202 25 0 chr1 13520998 13521156 -183674276 + MamRep1161 DNA TcMar 1 162 -795 3 688 452 293 0 67 chr1 13521339 13521489 -183673943 + B1F SINE Alu 1 140 -9 3 688 192 135 0 0 chr1 13521632 13521669 -183673763 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 688 240 111 0 0 chr1 13522014 13522050 -183673382 + (A)n Simple_repeat Simple_repeat 1 36 0 3 688 228 281 79 55 chr1 13522066 13522249 -183673183 - L2b LINE L2 -192 3195 3008 3 688 370 53 35 0 chr1 13522566 13522623 -183672809 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 688 230 273 103 52 chr1 13522664 13522780 -183672652 - B4 SINE B4 -157 135 14 3 688 427 222 172 16 chr1 13523793 13523921 -183671511 - B1_Mur3 SINE Alu -1 148 1 3 688 326 222 0 72 chr1 13524501 13524598 -183670834 - L1MEg LINE L1 -4313 1771 1682 4 688 207 0 0 0 chr1 13525021 13525044 -183670388 + (A)n Simple_repeat Simple_repeat 1 23 0 4 688 411 237 0 10 chr1 13525110 13525208 -183670224 + RSINE1 SINE B4 30 126 -39 4 688 306 339 53 32 chr1 13525297 13525486 -183669946 - RMER15 LTR ERVL -141 434 242 4 688 14506 148 8 20 chr1 13525573 13526149 -183669283 - L1_Mm LINE L1 -591 5292 4736 4 688 225 0 0 0 chr1 13526149 13526174 -183669258 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 688 14506 148 8 20 chr1 13526174 13526639 -183668793 - L1_Mm LINE L1 -1148 4735 4283 4 688 1560 49 0 0 chr1 13526639 13526824 -183668608 - B2_Mm1a SINE B2 -8 185 1 4 688 14506 148 8 20 chr1 13526824 13528334 -183667098 - L1_Mm LINE L1 -1601 4282 2771 4 688 1561 130 17 127 chr1 13528562 13528625 -183666807 - ORR1A4 LTR MaLR -8 321 274 4 688 1192 74 0 0 chr1 13528625 13528773 -183666659 - B1_Mus1 SINE Alu 0 148 1 4 688 1561 130 17 127 chr1 13528773 13529070 -183666362 - ORR1A4 LTR MaLR -56 273 1 4 688 1685 161 40 7 chr1 13529170 13529471 -183665961 - ORR1B2 LTR MaLR 0 367 57 4 688 396 0 0 0 chr1 13529471 13529515 -183665917 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 688 803 105 0 8 chr1 13529517 13529642 -183665790 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 5 688 729 160 104 0 chr1 13529680 13529805 -183665627 - B1_Mur4 SINE Alu -11 139 2 5 688 340 139 127 0 chr1 13529805 13529884 -183665548 - ORR1B2 LTR MaLR -287 91 3 4 688 841 218 176 8 chr1 13530354 13530604 -183664828 + MTD LTR MaLR 1 292 -127 5 688 234 188 0 0 chr1 13530829 13530877 -183664555 + T-rich Low_complexity Low_complexity 1 48 0 5 688 700 213 0 14 chr1 13530882 13531020 -183664412 - B1_Mur2 SINE Alu -1 148 13 5 688 250 286 48 0 chr1 13530968 13531031 -183664401 - B4A SINE B4 -143 149 84 5 688 292 290 108 20 chr1 13531096 13531244 -183664188 - RSINE1 SINE B4 0 165 5 5 688 207 0 0 0 chr1 13531318 13531341 -183664091 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 688 465 300 55 65 chr1 13531364 13531449 -183663983 + B4 SINE B4 2 83 -209 5 688 198 0 0 0 chr1 13531449 13531471 -183663961 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 688 465 300 55 65 chr1 13531471 13531677 -183663755 + B4 SINE B4 84 290 -2 5 688 462 225 0 0 chr1 13531948 13532121 -183663311 + GA-rich Low_complexity Low_complexity 2 174 0 6 688 395 233 45 41 chr1 13532146 13532299 -183663133 - MTEb LTR MaLR -202 177 32 6 688 2212 230 127 70 chr1 13532348 13533214 -183662218 + RMER17B LTR ERVK 1 915 -43 6 688 1822 127 60 18 chr1 13533423 13533759 -183661673 + ORR1B1 LTR MaLR 41 390 -4 6 688 225 387 55 28 chr1 13533760 13533869 -183661563 + MER115 DNA Tip100 104 215 -478 6 688 3516 150 220 36 chr1 13534063 13534789 -183660643 - RMER13A LTR ERVK 0 860 1 6 688 354 343 52 11 chr1 13534878 13535052 -183660380 + MER115 DNA Tip100 486 666 -27 6 688 3212 130 17 24 chr1 13535390 13535975 -183659457 - RMER6A LTR ERVK 0 756 176 6 688 637 160 160 0 chr1 13536209 13536334 -183659098 - B1_Mur4 SINE Alu 0 150 6 6 688 570 192 52 12 chr1 13536718 13536895 -183658537 + ORR1E LTR MaLR 235 405 -14 6 688 309 36 18 35 chr1 13537014 13537071 -183658361 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 688 1015 79 0 28 chr1 13537972 13538116 -183657316 + B1_Mus1 SINE Alu 9 148 0 7 688 243 0 0 0 chr1 13538129 13538156 -183657276 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 688 1637 152 15 31 chr1 13538382 13538708 -183656724 - ORR1A4 LTR MaLR -8 321 1 7 688 8692 21 0 0 chr1 13539111 13540538 -183654894 - L1Md_T LINE L1 0 6582 5156 7 688 2496 98 57 35 chr1 13540538 13540940 -183654492 + IAPLTR2a LTR ERVK 1 411 0 7 688 58390 15 6 6 chr1 13540941 13547418 -183648014 + IAPEz-int LTR ERVK 9 6481 0 7 688 2472 103 57 35 chr1 13547418 13547820 -183647612 + IAPLTR2a LTR ERVK 1 411 0 7 688 8257 26 0 0 chr1 13547820 13548771 -183646661 - L1Md_T LINE L1 -722 5161 4211 7 688 643 305 61 22 chr1 13549515 13549743 -183645689 - MTEa LTR MaLR -4 375 139 7 688 292 315 69 8 chr1 13550521 13550652 -183644780 - MLT1A1 LTR MaLR -12 396 258 7 688 421 229 18 35 chr1 13551024 13551137 -183644295 + MLT1A0 LTR MaLR 228 338 -27 7 688 316 295 0 10 chr1 13551336 13551432 -183644000 + PB1D10 SINE Alu 23 117 0 7 688 463 213 177 17 chr1 13553181 13553362 -183642070 - Tigger5 DNA MER2_type -21 2385 2176 8 688 1215 54 0 0 chr1 13554105 13554253 -183641179 - B1_Mus1 SINE Alu 0 148 1 8 688 22 0 0 0 chr1 13555238 13555260 -183640172 + AT_rich Low_complexity Low_complexity 1 22 0 8 688 246 116 0 0 chr1 13556066 13556109 -183639323 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 8 688 294 194 0 0 chr1 13556117 13556179 -183639253 + A-rich Low_complexity Low_complexity 3 64 0 8 688 321 242 0 0 chr1 13556879 13556941 -183638491 + B1_Mus2 SINE Alu 2 63 -84 8 688 189 0 0 0 chr1 13557386 13557407 -183638025 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 688 348 304 97 45 chr1 13557717 13557893 -183637539 + L1M4 LINE L1 3659 3843 -2303 8 688 421 268 130 58 chr1 13557893 13558154 -183637278 + B4A SINE B4 2 281 -11 8 688 702 254 135 39 chr1 13558166 13558530 -183636902 + L1M4 LINE L1 4128 4526 -1620 8 688 243 183 16 32 chr1 13558971 13559033 -183636399 + L1M4 LINE L1 5620 5680 -494 8 688 752 198 196 32 chr1 13560284 13560534 -183634898 - B4A SINE B4 -1 291 1 8 688 1267 34 0 13 chr1 13560843 13560993 -183634439 - B1_Mus1 SINE Alu 0 148 1 9 688 461 32 4 0 chr1 13561074 13561136 -183634296 + B1_Mm SINE Alu 57 147 0 9 688 240 280 24 71 chr1 13561201 13561328 -183634104 - RSINE1 SINE B4 -1 164 44 9 688 1245 146 9 40 chr1 13561517 13561739 -183633693 - B3 SINE B2 0 216 2 9 688 935 72 0 103 chr1 13563544 13563699 -183631733 - B1_Mm SINE Alu 0 147 9 9 688 254 287 0 50 chr1 13564695 13564794 -183630638 + PB1D10 SINE Alu 16 109 -8 9 688 207 215 0 0 chr1 13565610 13565675 -183629757 + C-rich Low_complexity Low_complexity 1 65 0 9 688 22 0 0 0 chr1 13566106 13566128 -183629304 + AT_rich Low_complexity Low_complexity 1 22 0 9 688 1029 110 14 0 chr1 13566251 13566396 -183629036 - B1_Mus1 SINE Alu 0 148 2 9 688 646 272 54 5 chr1 13567764 13567949 -183627483 + B3 SINE B2 15 208 -8 9 688 1208 68 0 0 chr1 13568677 13568825 -183626607 + B1_Mus1 SINE Alu 1 148 0 1 688 342 0 0 0 chr1 13568941 13568979 -183626453 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 688 375 262 206 0 chr1 13572555 13572662 -183622770 + RSINE1 SINE B4 2 130 -35 1 688 267 31 0 0 chr1 13573865 13573897 -183621535 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 688 210 143 0 0 chr1 13574125 13574160 -183621272 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 688 253 326 160 0 chr1 13574548 13574692 -183620740 + MER44B DNA MER2_type 138 304 -246 1 688 247 286 118 33 chr1 13574798 13574950 -183620482 + MER44B DNA MER2_type 375 539 -11 1 688 200 31 62 0 chr1 13575183 13575215 -183620217 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 688 385 333 11 0 chr1 13575331 13575421 -183620011 + RSINE1 SINE B4 46 136 -29 1 688 216 0 0 0 chr1 13575436 13575460 -183619972 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 1 688 238 289 26 13 chr1 13575496 13575573 -183619859 + B3A SINE B2 1 78 -120 1 688 315 0 0 0 chr1 13575611 13575646 -183619786 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 688 1059 195 35 15 chr1 13576477 13576675 -183618757 + B3 SINE B2 15 216 0 1 688 572 278 32 0 chr1 13576703 13576829 -183618603 + RSINE1 SINE B4 15 144 -21 1 688 210 105 0 0 chr1 13577186 13577224 -183618208 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 688 658 199 16 8 chr1 13577794 13577921 -183617511 + B1_Mur4 SINE Alu 23 150 0 1 688 216 184 98 39 chr1 13578131 13578182 -183617250 - B1F SINE Alu -45 104 51 1 688 23 54 0 0 chr1 13579477 13579514 -183615918 + GC_rich Low_complexity Low_complexity 1 37 0 1 688 25 83 0 0 chr1 13579546 13579606 -183615826 + GC_rich Low_complexity Low_complexity 1 60 0 1 688 369 0 0 0 chr1 13579978 13580019 -183615413 + (A)n Simple_repeat Simple_repeat 1 41 0 1 688 274 304 34 59 chr1 13580376 13580495 -183614937 + ID_B1 SINE B4 57 172 -52 1 688 438 261 0 43 chr1 13580410 13580526 -183614906 + PB1D7 SINE Alu 10 120 0 1 688 1044 116 7 0 chr1 13580957 13581103 -183614329 + B1_Mus1 SINE Alu 2 148 0 1 688 306 306 59 15 chr1 13581924 13582060 -183613372 - L1MB8 LINE L1 -20 6158 6017 1 688 216 0 0 0 chr1 13582213 13582237 -183613195 + (T)n Simple_repeat Simple_repeat 1 24 0 1 688 426 294 42 7 chr1 13582237 13582381 -183613051 - B1F SINE Alu 0 149 1 1 688 1101 106 0 0 chr1 13582439 13582619 -183612813 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 688 348 281 0 42 chr1 13582927 13583046 -183612386 - PB1D9 SINE Alu -5 115 2 1 688 319 269 87 58 chr1 13583305 13583443 -183611989 - MTEa LTR MaLR -11 368 213 1 688 1208 204 120 41 chr1 13583452 13583603 -183611829 + ORR1D2 LTR MaLR 2 163 -207 1 688 405 0 0 0 chr1 13583603 13583648 -183611784 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 688 1208 204 120 41 chr1 13583648 13583838 -183611594 + ORR1D2 LTR MaLR 164 370 0 1 688 420 111 0 0 chr1 13583841 13583913 -183611519 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 688 594 302 7 7 chr1 13583913 13584053 -183611379 - MTEa LTR MaLR -196 183 44 1 688 2925 282 56 60 chr1 13584079 13584489 -183610943 - MTE2b-int LTR MaLR -2 1578 1157 1 688 2253 143 113 3 chr1 13584489 13584868 -183610564 + MTC LTR MaLR 1 421 0 1 688 2925 247 55 38 chr1 13584868 13585767 -183609665 - MTE2b-int LTR MaLR -424 1156 6 1 688 244 392 31 10 chr1 13585764 13585862 -183609570 - MTE-int LTR MaLR -975 605 506 1 688 347 188 31 15 chr1 13585868 13585933 -183609499 + ORR1D1 LTR MaLR 1 66 -308 1 688 894 275 43 76 chr1 13586356 13586792 -183608640 + RLTR11A2 LTR ERVK 1 424 -17 1 688 2417 56 3 0 chr1 13586923 13587225 -183608207 + ORR1A2 LTR MaLR 25 327 0 1 688 276 333 105 0 chr1 13587940 13588102 -183607330 - L2 LINE L2 -1436 1983 1805 1 688 295 338 97 19 chr1 13588376 13588530 -183606902 - L2 LINE L2 -2015 1404 1239 1 688 244 303 129 31 chr1 13588863 13589057 -183606375 + LTR33 LTR ERVL 275 487 -28 1 688 277 315 142 67 chr1 13589080 13589852 -183605580 - L2 LINE L2 -2332 1087 258 1 688 289 299 168 41 chr1 13589884 13590128 -183605304 - MER65D LTR ERV1 -15 458 184 1 688 532 289 55 98 chr1 13590452 13590829 -183604603 - ORR1E LTR MaLR -4 375 3 1 688 348 214 97 18 chr1 13590912 13591026 -183604406 + B3A SINE B2 1 123 -75 1 688 1080 111 0 0 chr1 13591059 13591239 -183604193 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 688 188 111 0 27 chr1 13591239 13591275 -183604157 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 688 518 101 0 0 chr1 13591864 13591990 -183603442 + L1_Mus2 LINE L1 6482 6566 0 1 688 556 276 20 27 chr1 13592060 13592209 -183603223 + RSINE1 SINE B4 4 151 -14 1 688 624 220 7 41 chr1 13592211 13592358 -183603074 - MER57E1 LTR ERV1 -221 151 10 1 688 506 320 33 0 chr1 13593673 13593795 -183601637 + RSINE1 SINE B4 25 150 -15 1 688 919 308 94 11 chr1 13594299 13594651 -183600781 + Tigger7 DNA MER2_type 10 390 -2101 1 688 363 295 40 16 chr1 13594997 13595121 -183600311 + Tigger7 DNA MER2_type 479 605 -1886 1 688 4167 37 2 89 chr1 13595149 13595710 -183599722 - RLTR1B LTR ERV1 0 512 1 1 688 278 307 39 109 chr1 13595927 13596283 -183599149 + ORR1D1 LTR MaLR 31 351 -23 1 688 819 328 115 58 chr1 13596283 13596902 -183598530 + ORR1D1-int LTR MaLR 1 654 -926 1 688 1415 222 26 14 chr1 13596911 13597222 -183598210 + MT2A LTR ERVL 166 558 -43 1 688 615 235 0 0 chr1 13597242 13597361 -183598071 + PB1D9 SINE Alu 2 120 0 1 688 242 326 61 10 chr1 13597419 13597518 -183597914 + ORR1D1-int LTR MaLR 738 841 -739 1 688 537 272 216 46 chr1 13597681 13598001 -183597431 + ORR1D1-int LTR MaLR 1066 1440 -140 1 688 1327 266 28 3 chr1 13598001 13598321 -183597111 - MTE2b LTR MaLR 0 379 52 1 688 334 245 91 10 chr1 13598314 13598413 -183597019 - MTE2b LTR MaLR -270 109 3 1 688 302 281 37 0 chr1 13598694 13598776 -183596656 + MTEb LTR MaLR 294 378 -1 1 688 225 65 0 0 chr1 13600159 13600190 -183595242 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 688 2231 115 128 5 chr1 13600923 13601291 -183594141 - MTC LTR MaLR -8 413 1 1 688 369 295 196 34 chr1 13601504 13601795 -183593637 - HAL1 LINE L1 -305 2202 1865 1 688 2031 121 9 121 chr1 13601795 13602257 -183593175 + RMER17C LTR ERVK 1 410 0 1 688 27 87 0 0 chr1 13603028 13603097 -183592335 + AT_rich Low_complexity Low_complexity 1 69 0 1 688 282 189 38 0 chr1 13603242 13603295 -183592137 + ID4_ SINE ID 28 82 -1 1 688 633 203 66 22 chr1 13603249 13603385 -183592047 + ID_B1 SINE B4 38 179 -45 1 688 323 204 132 75 chr1 13603297 13603403 -183592029 + PB1D10 SINE Alu 6 117 0 1 688 1888 191 14 22 chr1 13603473 13603831 -183591601 - ORR1B2 LTR MaLR 0 367 13 1 688 783 227 92 5 chr1 13603881 13604076 -183591356 - B3 SINE B2 0 216 5 1 688 322 308 71 50 chr1 13604444 13604584 -183590848 + B1F1 SINE Alu 1 143 -6 1 688 608 284 174 20 chr1 13605331 13605532 -183589900 - B4A SINE B4 -18 274 43 1 688 620 323 124 19 chr1 13606075 13606340 -183589092 + Tigger7 DNA MER2_type 114 406 -2085 1 688 347 233 106 63 chr1 13606334 13606376 -183589056 + Tigger7 DNA MER2_type 2237 2270 -221 1 688 565 209 110 15 chr1 13606376 13606512 -183588920 - B1_Mur1 SINE Alu 0 149 1 1 688 347 233 106 63 chr1 13606512 13606611 -183588821 + Tigger7 DNA MER2_type 2271 2383 -108 1 688 1924 136 59 126 chr1 13606611 13607032 -183588400 - RLTR9C LTR ERVK 0 393 1 1 688 522 105 20 0 chr1 13607032 13607117 -183588315 - ETnERV2-int LTR ERVK -4 7402 7331 1 688 4374 177 21 39 chr1 13607321 13609379 -183586053 - ETnERV2-int LTR ERVK -3321 4085 2356 1 688 1024 123 0 17 chr1 13609945 13610118 -183585314 - RLTR13D1 LTR ERVK -156 650 481 1 688 2789 156 27 6 chr1 13610118 13610602 -183584830 - ETnERV2-int LTR ERVK -4417 2989 2496 1 688 3999 186 37 97 chr1 13610635 13610999 -183584433 - MMETn-int LTR ERVK -3681 1163 805 1 688 1137 88 0 0 chr1 13610999 13611146 -183584286 - B1_Mm SINE Alu 0 147 1 1 688 3999 186 37 97 chr1 13611146 13611904 -183583528 - MMETn-int LTR ERVK -4040 804 108 1 688 1992 136 59 93 chr1 13612049 13612456 -183582976 - RLTR9C LTR ERVK 0 393 1 1 688 251 314 71 0 chr1 13612463 13612533 -183582899 + Tigger7 DNA MER2_type 2404 2478 -13 1 688 273 119 0 0 chr1 13612582 13612624 -183582808 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1 688 222 37 0 0 chr1 13612661 13612688 -183582744 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 1 688 282 29 0 0 chr1 13612725 13612760 -183582672 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 1 688 3072 74 5 2 chr1 13612760 13613154 -183582278 + MTB LTR MaLR 5 399 -1 1 688 269 273 0 43 chr1 13613187 13613279 -183582153 - PB1D10 SINE Alu -7 110 23 1 688 26 0 0 0 chr1 13613850 13613876 -183581556 + AT_rich Low_complexity Low_complexity 1 26 0 1 688 569 128 59 0 chr1 13613886 13613988 -183581444 - B1_Mur4 SINE Alu -42 108 1 1 688 367 210 83 68 chr1 13613988 13614022 -183581410 - MT2B LTR ERVL -443 158 123 1 688 252 283 88 9 chr1 13614522 13614636 -183580796 - L1MB4 LINE L1 -249 5931 5809 1 688 201 29 57 29 chr1 13614814 13614849 -183580583 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 688 1522 57 5 5 chr1 13614928 13615122 -183580310 - B2_Mm2 SINE B2 0 195 2 1 688 324 262 7 176 chr1 13615458 13615611 -183579821 - RMER15 LTR ERVL -445 130 4 1 688 1039 183 39 24 chr1 13615771 13615978 -183579454 + B3 SINE B2 2 211 -5 1 688 2044 116 96 3 chr1 13616266 13616620 -183578812 + ORR1B1 LTR MaLR 1 387 -7 1 688 352 234 78 7 chr1 13617709 13617851 -183577581 + ID_B1 SINE B4 69 220 -4 1 688 22 35 0 0 chr1 13617905 13617934 -183577498 + AT_rich Low_complexity Low_complexity 1 29 0 1 688 212 269 75 0 chr1 13617942 13618009 -183577423 + L2a LINE L2 3342 3413 -13 1 688 571 298 61 8 chr1 13618238 13618605 -183576827 + MTD LTR MaLR 1 419 0 1 688 329 347 47 47 chr1 13620392 13620691 -183574741 + Lx8 LINE L1 7102 7400 -73 1 688 496 293 57 6 chr1 13620746 13620921 -183574511 - B3A SINE B2 -14 184 1 1 688 271 301 272 0 chr1 13621173 13621346 -183574086 - MIR SINE MIR 0 262 43 1 688 642 229 23 0 chr1 13624063 13624194 -183571238 + RSINE1 SINE B4 2 135 -30 1 688 306 0 0 0 chr1 13624194 13624228 -183571204 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 688 363 269 164 21 chr1 13624240 13624612 -183570820 + L1_Mur3 LINE L1 2989 3422 -2425 1 688 538 262 68 32 chr1 13624696 13624960 -183570472 + L1_Mur3 LINE L1 3839 4099 -1784 1 688 861 149 0 39 chr1 13624972 13625126 -183570306 - B1_Mur4 SINE Alu -2 148 1 1 688 376 325 101 68 chr1 13625179 13625516 -183569916 + ORR1E LTR MaLR 5 352 -7 1 688 420 71 0 0 chr1 13625666 13625722 -183569710 + (CAG)n Simple_repeat Simple_repeat 1 56 0 2 688 1273 267 139 16 chr1 13625745 13626293 -183569139 + L1MA4 LINE L1 4410 5024 -1119 2 688 1126 78 0 0 chr1 13626457 13626598 -183568834 + B1_Mus1 SINE Alu 1 141 -7 2 688 217 376 8 67 chr1 13626791 13626925 -183568507 - ID_B1 SINE B4 -13 211 86 2 688 506 311 91 4 chr1 13626943 13627185 -183568247 + L1MA4 LINE L1 5344 5606 -706 2 688 345 259 12 0 chr1 13627185 13627266 -183568166 + ID4_ SINE ID 1 82 -1 2 688 252 106 0 96 chr1 13627269 13627342 -183568090 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 2 688 670 243 146 33 chr1 13627372 13627674 -183567758 + L1MA4 LINE L1 5603 5938 -362 2 688 477 279 127 24 chr1 13627695 13627860 -183567572 + B3A SINE B2 1 182 -16 2 688 982 52 22 0 chr1 13627881 13628017 -183567415 - B1_Mus1 SINE Alu 0 148 10 2 688 327 78 0 0 chr1 13628181 13628232 -183567200 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 688 21 71 0 0 chr1 13628988 13629030 -183566402 + AT_rich Low_complexity Low_complexity 1 42 0 2 688 248 267 212 10 chr1 13630332 13630525 -183564907 + HAL1 LINE L1 85 316 -2191 2 688 231 250 69 0 chr1 13630581 13630653 -183564779 + ID2 SINE ID 3 79 -4 2 689 558 259 48 0 chr1 13631570 13631717 -183563715 - B3A SINE B2 -41 157 4 2 689 236 233 33 16 chr1 13632057 13632118 -183563314 + MER34 LTR ERV1 460 521 -21 2 689 404 325 108 32 chr1 13632248 13632499 -183562933 + MER31A LTR ERV1 216 485 0 2 689 1226 54 0 0 chr1 13632675 13632823 -183562609 + B1_Mus1 SINE Alu 1 148 0 2 689 288 91 0 0 chr1 13632823 13632867 -183562565 + (A)n Simple_repeat Simple_repeat 1 44 0 2 689 239 273 202 0 chr1 13632898 13632997 -183562435 - L1MA6 LINE L1 -134 6166 6048 2 689 761 162 0 108 chr1 13633602 13633768 -183561664 - B1_Mus1 SINE Alu 0 148 1 2 689 804 164 7 20 chr1 13634309 13634458 -183560974 + B1_Mus2 SINE Alu 1 147 0 2 689 609 196 171 6 chr1 13634494 13634658 -183560774 + ORR1D1 LTR MaLR 172 362 -12 2 689 188 191 0 87 chr1 13635026 13635072 -183560360 - L2c LINE L2 -27 3360 3319 2 689 1960 134 23 23 chr1 13635089 13635441 -183559991 - ORR1B1 LTR MaLR -2 392 41 2 689 345 340 168 23 chr1 13635450 13635706 -183559726 + MLT1J2 LTR MaLR 1 293 -155 2 689 495 118 0 0 chr1 13635814 13635890 -183559542 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2 689 1215 61 0 0 chr1 13635915 13636062 -183559370 - B1_Mm SINE Alu 0 147 1 2 689 343 259 100 20 chr1 13636587 13636737 -183558695 - RSINE1 SINE B4 0 165 4 2 689 397 236 132 16 chr1 13637077 13637206 -183558226 - B1F SINE Alu -2 147 4 2 689 4584 75 3 0 chr1 13638460 13639051 -183556381 - L1_Mus1 LINE L1 0 6567 5975 2 689 641 133 0 0 chr1 13639260 13639358 -183556074 - B1_Mus2 SINE Alu -31 116 19 2 689 408 256 8 17 chr1 13639358 13639379 -183556053 - ID_B1 SINE B4 -28 196 79 2 689 568 262 30 65 chr1 13639394 13639594 -183555838 - B3A SINE B2 -4 194 2 2 689 198 265 49 22 chr1 13640225 13640330 -183555102 + L2a LINE L2 3287 3398 -28 2 689 321 268 82 0 chr1 13641390 13641487 -183553945 - MIR SINE MIR -150 112 8 2 689 1925 209 82 6 chr1 13641528 13642028 -183553404 + Lx9 LINE L1 7073 7610 -34 2 689 271 159 29 14 chr1 13642028 13642098 -183553334 + GA-rich Low_complexity Low_complexity 6 76 0 2 689 2708 81 70 0 chr1 13642850 13643221 -183552211 + MTB LTR MaLR 1 397 -3 2 689 234 0 0 0 chr1 13643221 13643247 -183552185 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 689 356 279 119 38 chr1 13643290 13643450 -183551982 + L1M2 LINE L1 3506 3678 -2465 2 689 597 183 17 9 chr1 13644044 13644160 -183551272 - PB1D9 SINE Alu -2 118 2 2 689 240 239 77 68 chr1 13644898 13645015 -183550417 + L1MA6 LINE L1 6042 6159 -141 2 689 1300 80 17 0 chr1 13645018 13645193 -183550239 + B2_Mm1t SINE B2 2 179 -14 2 689 186 209 0 0 chr1 13645227 13645270 -183550162 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 689 28 29 0 0 chr1 13645302 13645337 -183550095 + AT_rich Low_complexity Low_complexity 1 35 0 2 689 624 266 19 7 chr1 13645349 13645504 -183549928 + RSINE1 SINE B4 9 165 0 2 689 182 294 146 9 chr1 13646673 13646783 -183548649 - MIRb SINE MIR -50 218 94 2 689 186 350 85 20 chr1 13647332 13647533 -183547899 - MIR SINE MIR -4 258 45 2 689 975 280 92 26 chr1 13647545 13647960 -183547472 + Lx9 LINE L1 7046 7487 -157 2 689 191 343 15 0 chr1 13648599 13648666 -183546766 - L2c LINE L2 -221 3166 3099 2 689 267 300 33 0 chr1 13648763 13648853 -183546579 - L2c LINE L2 -626 2793 2701 2 689 257 169 0 17 chr1 13649055 13649115 -183546317 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 689 401 290 117 6 chr1 13649528 13649691 -183545741 - MamRep137 DNA TcMar? -230 214 34 2 689 408 298 16 0 chr1 13650083 13650207 -183545225 - B1F1 SINE Alu -17 132 7 2 689 212 114 45 0 chr1 13651104 13651148 -183544284 + A-rich Low_complexity Low_complexity 1 46 0 2 689 681 317 70 22 chr1 13651152 13651423 -183544009 - B4 SINE B4 -8 284 1 2 689 1234 48 0 0 chr1 13651469 13651616 -183543816 - B1_Mus1 SINE Alu 0 148 2 2 689 4421 167 56 39 chr1 13652178 13653024 -183542408 - RMER13A LTR ERVK 0 860 1 2 689 926 214 75 136 chr1 13653144 13653415 -183542017 + ORR1D1 LTR MaLR 44 292 -82 2 689 2771 96 125 7 chr1 13653415 13653846 -183541586 + RLTR45 LTR ERVK 1 482 0 2 689 926 214 75 136 chr1 13653846 13653920 -183541512 + ORR1D1 LTR MaLR 293 368 -6 2 689 1450 228 73 3 chr1 13653927 13654297 -183541135 + ORR1D1-int LTR MaLR 2 397 -973 2 689 2033 116 3 54 chr1 13654304 13654640 -183540792 - ORR1A2 LTR MaLR -8 319 1 2 689 1278 14 7 0 chr1 13654685 13654831 -183540601 + B1_Mus2 SINE Alu 1 147 0 2 689 3403 218 101 10 chr1 13654841 13655720 -183539712 + ORR1D1-int LTR MaLR 412 1370 0 2 689 759 178 17 45 chr1 13655720 13655875 -183539557 + ORR1D1 LTR MaLR 1 147 -227 2 689 1267 34 0 0 chr1 13655875 13656022 -183539410 + B1_Mus2 SINE Alu 1 147 0 2 689 848 198 102 9 chr1 13656096 13656315 -183539117 + ORR1D1 LTR MaLR 155 369 -5 2 689 1088 302 94 26 chr1 13656330 13657025 -183538407 - L1_Rod LINE L1 -597 5700 4891 2 689 1541 144 139 70 chr1 13657026 13657281 -183538151 - RMER10A LTR ERVL 0 442 195 2 689 333 0 0 0 chr1 13657281 13657318 -183538114 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 689 1541 144 139 70 chr1 13657318 13657465 -183537967 - RMER10A LTR ERVL -248 194 14 2 689 347 198 0 90 chr1 13657483 13657528 -183537904 - L1M2 LINE L1 -1190 4953 4911 2 689 723 184 14 41 chr1 13657528 13657675 -183537757 - B1_Mus1 SINE Alu -5 143 1 2 689 347 198 0 90 chr1 13657675 13657718 -183537714 - L1M2 LINE L1 -1233 4910 4873 2 689 316 255 90 21 chr1 13658059 13658203 -183537229 - RLTR16 LTR ERVK -304 201 48 2 689 639 258 114 55 chr1 13658233 13658615 -183536817 - L1_Rod LINE L1 -1308 4838 4376 2 689 207 0 0 0 chr1 13658616 13658639 -183536793 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2 689 358 272 78 9 chr1 13659865 13660007 -183535425 - MLT1B LTR MaLR -33 357 196 2 689 1208 58 35 6 chr1 13660123 13660296 -183535136 - L1Md_F3 LINE L1 0 6584 6407 2 689 230 136 60 15 chr1 13660450 13660517 -183534915 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 2 689 309 313 116 0 chr1 13660798 13660958 -183534474 - L1MA4 LINE L1 -368 5932 5737 2 689 315 0 0 0 chr1 13661131 13661166 -183534266 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 689 419 252 0 150 chr1 13661211 13661351 -183534081 - B3A SINE B2 -77 121 3 2 689 180 0 0 0 chr1 13661485 13661505 -183533927 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 689 1148 277 37 15 chr1 13661529 13661939 -183533493 - L1MA4 LINE L1 -1004 5139 4721 2 689 23 0 0 0 chr1 13662341 13662364 -183533068 + AT_rich Low_complexity Low_complexity 1 23 0 2 689 6775 182 45 18 chr1 13663084 13664506 -183530926 - L1_Mur3 LINE L1 -214 5666 4206 2 689 603 224 75 0 chr1 13664550 13664697 -183530735 - L1_Mur3 LINE L1 -1991 3889 3732 2 689 2225 251 135 20 chr1 13664695 13665497 -183529935 - L1_Mur3 LINE L1 -3189 2688 1795 2 689 2301 235 97 71 chr1 13665497 13666262 -183529170 - RMER13A LTR ERVK -75 785 1 2 689 687 185 49 38 chr1 13666262 13666447 -183528985 - L1_Mur3 LINE L1 -4078 1802 1616 2 689 386 282 100 61 chr1 13666549 13666677 -183528755 - MLT1A0 LTR MaLR -3 362 233 2 689 2016 146 77 3 chr1 13666677 13666875 -183528557 - ORR1C1 LTR MaLR 0 378 167 2 689 279 0 0 0 chr1 13666875 13666906 -183528526 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 689 2150 146 77 3 chr1 13666906 13667058 -183528374 - ORR1C1 LTR MaLR -212 166 3 2 689 453 280 109 32 chr1 13667058 13667249 -183528183 - MLT1A0 LTR MaLR -133 232 1 2 689 361 166 42 120 chr1 13667456 13667574 -183527858 - RLTR21 LTR ERVK -136 1436 1290 2 689 387 0 0 0 chr1 13667617 13667660 -183527772 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 689 180 0 0 0 chr1 13667711 13667731 -183527701 + (TCCA)n Simple_repeat Simple_repeat 4 23 0 2 689 5596 176 48 46 chr1 13667731 13667750 -183527682 - RLTR21 LTR ERVK -387 1185 1173 2 689 3023 199 135 8 chr1 13667750 13668404 -183527028 - RMER19A LTR ERVK 0 737 1 2 689 5596 176 48 46 chr1 13668404 13669566 -183525866 - RLTR21 LTR ERVK -400 1172 1 2 689 239 254 0 0 chr1 13669613 13669676 -183525756 + T-rich Low_complexity Low_complexity 1 63 0 2 689 264 91 0 0 chr1 13670272 13670316 -183525116 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 2 689 754 93 46 0 chr1 13671041 13671149 -183524283 - L1Md_F2 LINE L1 -450 6132 6020 2 689 3982 47 2 11 chr1 13671149 13671618 -183523814 + L1Md_F2 LINE L1 6118 6582 0 2 689 1847 121 61 16 chr1 13671787 13672097 -183523335 - ORR1A4 LTR MaLR -5 324 1 2 689 567 276 31 0 chr1 13672097 13672222 -183523210 + RSINE1 SINE B4 22 150 -15 2 689 486 0 0 0 chr1 13672395 13672449 -183522983 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 2 689 1456 268 104 84 chr1 13672897 13673519 -183521913 + RLTR26 LTR ERVK 1 635 -7 2 689 335 299 137 14 chr1 13673522 13673661 -183521771 + MIRc SINE MIR 50 205 -63 2 689 477 202 154 34 chr1 13673842 13674059 -183521373 + L1MA6 LINE L1 6029 6271 -29 2 689 25 0 0 0 chr1 13674059 13674084 -183521348 + AT_rich Low_complexity Low_complexity 1 25 0 2 689 287 275 75 43 chr1 13674662 13674848 -183520584 - L1MC4a LINE L1 -1995 5887 5696 2 689 1088 217 134 96 chr1 13674914 13675049 -183520383 - Lx7 LINE L1 -8 7688 7523 2 689 180 0 0 0 chr1 13675049 13675069 -183520363 + (TATAA)n Simple_repeat Simple_repeat 1 20 0 2 689 1088 217 134 96 chr1 13675069 13675442 -183519990 - Lx7 LINE L1 -174 7522 7162 2 689 369 0 0 0 chr1 13675515 13675556 -183519876 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 689 22 0 0 0 chr1 13675706 13675728 -183519704 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 4644 124 13 30 chr1 13675736 13676427 -183519005 - Lx3B LINE L1 -1 6972 6294 3 689 1677 69 190 14 chr1 13676427 13676706 -183518726 + Lx3B LINE L1 5956 6283 -690 3 689 1590 264 91 18 chr1 13676898 13677048 -183518384 + L1M2 LINE L1 3768 3940 -2203 3 689 3697 117 148 3 chr1 13677048 13677649 -183517783 - RMER6C LTR ERVK 0 690 3 3 689 1590 264 91 18 chr1 13677649 13678150 -183517282 + L1M2 LINE L1 3941 4466 -1677 3 689 187 31 30 30 chr1 13678155 13678188 -183517244 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 689 762 290 9 5 chr1 13678247 13678469 -183516963 + L1M2 LINE L1 4695 4917 -1226 3 689 2298 243 55 9 chr1 13678469 13679030 -183516402 + Lx9 LINE L1 6360 6946 -698 3 689 1310 241 161 12 chr1 13679439 13679745 -183515687 + Lx9 LINE L1 7151 7474 -170 3 689 219 36 0 0 chr1 13679745 13679773 -183515659 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 689 1310 241 161 12 chr1 13679773 13679894 -183515538 + Lx9 LINE L1 7475 7641 -3 3 689 1387 266 149 69 chr1 13679914 13680363 -183515069 + L1_Rod LINE L1 4846 5315 -532 3 689 400 266 33 210 chr1 13680363 13680544 -183514888 - B1_Mur3 SINE Alu 0 149 1 3 689 1387 266 149 69 chr1 13680544 13681022 -183514410 + L1_Rod LINE L1 5316 5847 0 3 689 329 329 42 76 chr1 13681145 13681204 -183514228 - RMER2 LTR ERV1 -5 562 506 3 689 4738 61 28 3 chr1 13681204 13681777 -183513655 - LTRIS_Mus LTR ERV1 0 587 1 3 689 329 329 42 76 chr1 13681777 13681954 -183513478 - RMER2 LTR ERV1 -62 505 334 3 689 17454 147 5 54 chr1 13681955 13684086 -183511346 - Lx LINE L1 -642 6012 3927 3 689 3430 29 3 0 chr1 13684086 13684465 -183510967 - L1Md_F2 LINE L1 -2 6580 6201 3 689 17454 159 5 68 chr1 13684465 13684548 -183510884 - Lx LINE L1 -1957 3926 3849 3 689 474 137 0 0 chr1 13684548 13684621 -183510811 - B1_Mus2 SINE Alu -74 73 1 3 689 286 212 0 130 chr1 13684621 13684640 -183510792 - MT2B LTR ERVL -371 230 151 3 689 17454 159 5 68 chr1 13684640 13685892 -183509540 - Lx LINE L1 -1957 3848 2667 3 689 1772 166 2 8 chr1 13685888 13686196 -183509236 - L1VL4 LINE L1 -5996 306 2 3 689 216 67 0 0 chr1 13686501 13686531 -183508901 + (T)n Simple_repeat Simple_repeat 1 30 0 3 689 528 351 55 9 chr1 13686531 13686859 -183508573 - RLTR4_MM-int LTR ERV1 -3233 4368 4026 3 689 276 143 0 18 chr1 13687117 13687174 -183508258 - RLTR4_MM-int LTR ERV1 -3871 3581 3526 3 689 203 133 0 0 chr1 13687490 13687520 -183507912 + (TCC)n Simple_repeat Simple_repeat 1 30 0 3 689 490 318 111 14 chr1 13687932 13688292 -183507140 - MuRRS4-int LTR ERV1 -3628 1435 1041 3 689 282 222 97 0 chr1 13688633 13688705 -183506727 + MMVL30-int LTR ERV1 1266 1344 -2354 3 689 532 263 17 0 chr1 13689519 13689637 -183505795 + PB1D7 SINE Alu 1 120 0 3 689 460 93 35 11 chr1 13689637 13689724 -183505708 + (CAAAA)n Simple_repeat Simple_repeat 1 89 0 3 689 737 280 114 0 chr1 13689779 13689972 -183505460 + B3 SINE B2 2 216 0 3 689 365 208 111 0 chr1 13691630 13691702 -183503730 - ID4 SINE ID -1 82 3 3 689 1298 297 90 19 chr1 13692736 13693278 -183502154 - Lx8 LINE L1 -244 7229 6649 3 689 6815 137 117 11 chr1 13693341 13693613 -183501819 - Lx5 LINE L1 0 7050 6738 3 689 380 20 20 0 chr1 13693613 13693662 -183501770 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 689 6815 137 117 11 chr1 13693662 13694574 -183500858 - Lx5 LINE L1 -313 6737 5743 3 689 1063 202 103 0 chr1 13694694 13694917 -183500515 + RMER20A LTR ERVK 14 259 -257 3 689 25 31 0 0 chr1 13695927 13695959 -183499473 + AT_rich Low_complexity Low_complexity 1 32 0 3 689 318 306 22 101 chr1 13696100 13696278 -183499154 + RSINE1 SINE B4 2 165 0 3 689 282 275 191 0 chr1 13696403 13696534 -183498898 - MER5A DNA MER1_type 0 189 34 3 689 687 265 132 124 chr1 13697264 13697634 -183497798 + MTE2b LTR MaLR 7 379 0 3 689 248 366 144 25 chr1 13698563 13698930 -183496502 + Arthur1 DNA Tip100 20 430 -3517 3 689 330 138 0 0 chr1 13698985 13699043 -183496389 + (CCCTG)n Simple_repeat Simple_repeat 5 62 0 3 689 1080 97 0 0 chr1 13699056 13699211 -183496221 + (TTTCC)n Simple_repeat Simple_repeat 5 159 0 3 689 752 292 200 5 chr1 13699221 13699630 -183495802 - Lx8 LINE L1 -153 7320 6832 3 689 859 309 31 0 chr1 13699678 13699937 -183495495 - Lx8 LINE L1 -1018 6455 6189 3 689 542 263 8 0 chr1 13700358 13700476 -183494956 - PB1D9 SINE Alu 0 120 2 3 689 634 282 106 0 chr1 13700902 13701090 -183494342 + ID_B1 SINE B4 16 223 -1 3 689 360 59 44 0 chr1 13701096 13701164 -183494268 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 3 689 828 221 85 18 chr1 13701173 13701246 -183494186 - MTD LTR MaLR -19 400 296 3 689 3534 35 5 2 chr1 13701246 13701641 -183493791 + MTA_Mm LTR MaLR 1 396 0 3 689 828 203 84 16 chr1 13701641 13701773 -183493659 - MTD LTR MaLR -77 342 199 3 689 3096 87 8 0 chr1 13701774 13702164 -183493268 - L1_Mus3 LINE L1 -3 6635 6243 3 689 2603 100 18 0 chr1 13702164 13702544 -183492888 + L1_Mm LINE L1 4987 5373 -510 3 689 763 264 66 6 chr1 13702544 13702727 -183492705 - MTD LTR MaLR -208 211 18 3 689 412 242 130 47 chr1 13703128 13703297 -183492135 + MLT2D LTR ERVL 1 183 -231 3 689 454 258 24 16 chr1 13703343 13703469 -183491963 + MTD LTR MaLR 293 419 0 3 689 2232 132 9 35 chr1 13703666 13704004 -183491428 + ORR1A4 LTR MaLR 1 329 0 3 689 486 298 14 28 chr1 13704825 13704970 -183490462 - ID_B1 SINE B4 0 224 82 3 689 934 321 54 43 chr1 13706300 13706766 -183488666 - L1MB3 LINE L1 -26 6157 5687 3 689 637 237 62 41 chr1 13706894 13707039 -183488393 - B1_Mur2 SINE Alu -1 148 1 3 689 267 281 0 0 chr1 13707583 13707754 -183487678 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 689 210 118 0 0 chr1 13708149 13708183 -183487249 + (TCG)n Simple_repeat Simple_repeat 1 34 0 3 689 258 32 0 0 chr1 13708183 13708214 -183487218 + (CCCCCT)n Simple_repeat Simple_repeat 1 31 0 3 689 1541 6 6 0 chr1 13708214 13708391 -183487041 + (TTC)n Simple_repeat Simple_repeat 1 179 0 3 689 526 244 275 41 chr1 13709117 13709288 -183486144 - B3 SINE B2 -4 212 2 3 689 35103 72 5 6 chr1 13709335 13711026 -183484406 - L1Md_F2 LINE L1 -8 6574 4885 3 689 8084 34 4 2 chr1 13711026 13711936 -183483496 + L1Md_F3 LINE L1 5673 6584 0 3 689 35103 73 5 6 chr1 13711936 13712189 -183483243 - L1Md_F2 LINE L1 -999 4884 4646 3 689 3644 20 5 0 chr1 13712189 13712583 -183482849 + MTA_Mm LTR MaLR 1 396 0 3 689 9954 28 0 1 chr1 13712583 13713682 -183481750 + MTA_Mm-int LTR MaLR 1 1098 0 3 689 3622 28 5 0 chr1 13713682 13714076 -183481356 + MTA_Mm LTR MaLR 1 396 0 3 689 35103 80 17 9 chr1 13714076 13718264 -183477168 - L1Md_F2 LINE L1 -1238 4645 405 3 689 908 185 11 6 chr1 13718437 13718611 -183476821 - BGLII_B LTR ERVK -31 410 236 3 689 1588 277 85 2 chr1 13718646 13719094 -183476338 - Lx8 LINE L1 -490 6983 6499 3 689 1294 325 79 23 chr1 13719554 13720453 -183474979 - L1_Mur3 LINE L1 -2750 3130 2182 3 689 215 227 0 0 chr1 13720468 13720512 -183474920 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 689 448 299 117 79 chr1 13720535 13720800 -183474632 - B4A SINE B4 -15 277 3 3 689 244 339 52 0 chr1 13720800 13720915 -183474517 - L1_Mur3 LINE L1 -3688 2192 2072 3 689 38938 29 0 0 chr1 13720986 13727409 -183468023 - L1Md_T LINE L1 0 6585 66 3 689 315 269 193 57 chr1 13727463 13727943 -183467489 - L1_Mur3 LINE L1 -3871 1976 1427 3 689 865 172 28 0 chr1 13727943 13728088 -183467344 - B1_Mur3 SINE Alu 0 149 1 3 689 315 266 182 55 chr1 13728088 13728278 -183467154 - L1_Mur3 LINE L1 -4410 1437 1203 3 689 273 307 20 10 chr1 13729316 13729418 -183466014 + GA-rich Low_complexity Low_complexity 3 105 0 3 689 1024 103 12 0 chr1 13729418 13729583 -183465849 + (GGA)n Simple_repeat Simple_repeat 3 169 0 3 689 5304 110 12 3 chr1 13730206 13730927 -183464505 - Lx3A LINE L1 -7 6974 6247 3 689 1732 309 112 19 chr1 13731750 13732538 -183462894 + Cheshire DNA MER1_type 70 930 -1490 3 689 1100 181 130 16 chr1 13732621 13732868 -183462564 + Lx6 LINE L1 7158 7432 -28 3 689 1378 304 140 52 chr1 13732875 13733942 -183461490 + Cheshire DNA MER1_type 917 2077 -343 3 689 416 171 34 0 chr1 13733953 13734041 -183461391 - Lx7 LINE L1 0 7696 7606 3 689 15475 91 45 19 chr1 13734041 13736579 -183458853 - Lx3A LINE L1 -918 6063 3453 3 689 5581 132 84 27 chr1 13736569 13738060 -183457372 - Lx3A LINE L1 -4239 1647 46 3 689 819 164 114 6 chr1 13738062 13738173 -183457259 - Lx7 LINE L1 -425 7271 7155 3 689 252 0 0 0 chr1 13738173 13738201 -183457231 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 689 819 164 114 6 chr1 13738201 13738255 -183457177 - Lx7 LINE L1 -542 7154 7089 3 689 2157 215 27 5 chr1 13738252 13738528 -183456904 - Lx7 LINE L1 -1661 6035 5759 3 689 180 0 0 0 chr1 13738528 13738548 -183456884 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 689 2157 205 32 0 chr1 13738548 13738770 -183456662 - Lx7 LINE L1 -1938 5758 5525 3 689 1070 171 66 5 chr1 13738771 13738992 -183456440 - RLTR17 LTR ERVK -2 690 427 3 689 1629 107 12 8 chr1 13738988 13739234 -183456198 - RLTR17 LTR ERVK -442 250 4 3 689 1452 148 65 4 chr1 13739236 13739513 -183455919 - Lx7 LINE L1 -351 5529 5236 3 689 5260 167 29 30 chr1 13739540 13740587 -183454845 - L1_Mur3 LINE L1 -13 5867 4822 3 689 2868 233 42 67 chr1 13740580 13742007 -183453425 - L1_Rod LINE L1 -3932 1915 520 3 689 987 242 134 46 chr1 13742168 13742541 -183452891 - MTD LTR MaLR -13 406 1 3 689 931 274 9 0 chr1 13742623 13742853 -183452579 - L1MA4 LINE L1 -603 5688 5457 3 689 586 282 65 0 chr1 13742858 13743074 -183452358 + L1MA4 LINE L1 5707 5936 -364 3 689 24 0 0 0 chr1 13743387 13743411 -183452021 + AT_rich Low_complexity Low_complexity 1 24 0 3 689 4692 38 0 8 chr1 13743411 13743943 -183451489 - L1_Mus1 LINE L1 -2 6565 6038 3 689 272 284 64 19 chr1 13744000 13744147 -183451285 + MIRm SINE MIR 4 152 -116 3 689 1526 198 133 9 chr1 13744562 13744723 -183450709 + ORR1D1 LTR MaLR 1 175 -199 3 689 381 70 0 0 chr1 13744723 13744780 -183450652 + (CAGT)n Simple_repeat Simple_repeat 1 57 0 3 689 1526 198 133 9 chr1 13744780 13744949 -183450483 + ORR1D1 LTR MaLR 176 372 -2 3 689 259 272 123 0 chr1 13745108 13745222 -183450210 - Lx7 LINE L1 -4 7692 7565 3 689 2459 211 43 68 chr1 13745239 13745870 -183449562 - Lx7 LINE L1 -278 7418 6804 3 689 185 297 122 0 chr1 13745909 13745983 -183449449 - MIR SINE MIR -170 92 10 3 689 431 334 76 49 chr1 13746143 13746490 -183448942 + MLT1J LTR MaLR 132 508 -4 3 689 1302 233 35 62 chr1 13746553 13746963 -183448469 - MTE2a LTR MaLR -14 405 7 3 689 394 356 114 13 chr1 13746963 13747350 -183448082 + L2 LINE L2 2162 2587 -832 3 689 30741 98 7 41 chr1 13748037 13753753 -183441679 - L1_Mus1 LINE L1 -1 6569 996 3 689 36577 65 5 14 chr1 13753755 13759898 -183435534 - L1Md_F2 LINE L1 0 6582 505 3 689 1813 218 68 38 chr1 13759903 13760561 -183434871 - L1Md_F LINE L1 -5495 1024 367 3 689 638 359 28 0 chr1 13760596 13760813 -183434619 - B4A SINE B4 -58 234 12 3 689 25 0 0 0 chr1 13760890 13760915 -183434517 + AT_rich Low_complexity Low_complexity 1 25 0 3 689 651 290 43 8 chr1 13761841 13762078 -183433354 + MIRc SINE MIR 23 264 -4 3 690 1843 229 98 65 chr1 13762880 13763740 -183431692 - RMER1B Other Other -9 1057 47 3 690 2749 40 6 12 chr1 13767616 13767942 -183427490 - L1_Mus1 LINE L1 0 6567 6244 3 690 205 170 43 0 chr1 13769054 13769101 -183426331 + A-rich Low_complexity Low_complexity 5 53 0 3 690 207 0 0 0 chr1 13769810 13769833 -183425599 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 690 295 91 55 0 chr1 13771245 13771300 -183424132 + (CCCCCT)n Simple_repeat Simple_repeat 6 63 0 3 690 326 320 40 0 chr1 13771509 13771609 -183423823 + PB1 SINE Alu 3 106 -21 4 690 319 241 133 9 chr1 13771607 13771720 -183423712 + RCHARR1 DNA MER1_type 367 493 -481 4 690 426 266 55 0 chr1 13771723 13771832 -183423600 + RCHARR1 DNA MER1_type 607 721 -253 4 690 1207 222 148 23 chr1 13771930 13772321 -183423111 + Lx7 LINE L1 7028 7467 -229 4 690 390 312 62 6 chr1 13772331 13772492 -183422940 + RCHARR1 DNA MER1_type 804 973 -1 4 690 219 312 30 50 chr1 13772508 13772609 -183422823 - MIRc SINE MIR -77 191 93 4 690 189 0 0 0 chr1 13773090 13773111 -183422321 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 690 327 65 0 0 chr1 13775255 13775301 -183420131 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 690 507 268 36 14 chr1 13775303 13775443 -183419989 - B3A SINE B2 -42 156 14 4 690 22 35 0 0 chr1 13777023 13777052 -183418380 + AT_rich Low_complexity Low_complexity 1 29 0 4 690 390 301 6 49 chr1 13778016 13778180 -183417252 - MIR SINE MIR -15 247 91 4 690 288 253 187 0 chr1 13778658 13778749 -183416683 - B3A SINE B2 -48 150 43 4 690 470 259 18 9 chr1 13779882 13779995 -183415437 + B3A SINE B2 49 162 -36 4 690 306 125 0 0 chr1 13780027 13780075 -183415357 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 690 22 0 0 0 chr1 13780331 13780353 -183415079 + AT_rich Low_complexity Low_complexity 1 22 0 4 690 325 286 94 13 chr1 13780396 13780545 -183414887 - MLT1L LTR MaLR -8 602 442 4 690 25 0 0 0 chr1 13781020 13781045 -183414387 + AT_rich Low_complexity Low_complexity 1 25 0 4 690 6761 114 36 16 chr1 13781059 13781491 -183413941 - Lx LINE L1 -1 6653 6205 4 690 7410 91 14 1 chr1 13781491 13782461 -183412971 - RLTR13C1 LTR ERVK 0 983 1 4 690 17225 114 36 16 chr1 13782461 13782857 -183412575 - Lx LINE L1 -450 6204 5805 4 690 378 0 0 0 chr1 13782857 13782899 -183412533 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 4 690 17225 206 20 121 chr1 13782899 13785363 -183410069 - Lx LINE L1 -76 5804 3481 4 690 422 301 159 34 chr1 13785363 13785690 -183409742 + RLTR9A LTR ERVK 1 368 0 4 690 17225 206 20 121 chr1 13785690 13786773 -183408659 - Lx LINE L1 -76 3480 2458 4 690 342 0 0 0 chr1 13786773 13786811 -183408621 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 690 17225 179 20 84 chr1 13786811 13788543 -183406889 - Lx LINE L1 -3423 2457 721 4 690 262 382 103 0 chr1 13788575 13788740 -183406692 - ID_B1 SINE B4 -9 215 34 4 690 465 271 8 32 chr1 13788771 13788897 -183406535 - ID_B1 SINE B4 0 224 102 4 690 26 30 0 0 chr1 13788917 13788950 -183406482 + AT_rich Low_complexity Low_complexity 1 33 0 4 690 1132 144 4 95 chr1 13789206 13789437 -183405995 - URR1A DNA MER1_type 0 226 17 4 690 638 247 7 0 chr1 13789550 13789696 -183405736 + B1_Mur1 SINE Alu 3 149 0 4 690 777 295 97 91 chr1 13789923 13789987 -183405445 - L1MC4 LINE L1 -408 7634 7566 4 690 312 70 0 0 chr1 13789987 13790030 -183405402 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 690 571 277 138 20 chr1 13790036 13790106 -183405326 - B4A SINE B4 -6 286 216 4 690 189 0 0 0 chr1 13790106 13790127 -183405305 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 4 690 571 277 138 20 chr1 13790127 13790310 -183405122 - B4A SINE B4 -77 215 3 4 690 777 295 97 91 chr1 13790310 13790603 -183404829 - L1MC4 LINE L1 -477 7565 7291 4 690 804 259 19 0 chr1 13790603 13790808 -183404624 - B3 SINE B2 -7 209 1 4 690 777 295 97 91 chr1 13790808 13791265 -183404167 - L1MC4 LINE L1 -752 7290 6807 4 690 587 282 145 44 chr1 13791260 13791654 -183403778 + L1MA9 LINE L1 5466 5931 -381 4 690 295 301 15 15 chr1 13791863 13791998 -183403434 - MER63D DNA AcHobo -890 171 37 4 690 296 220 53 42 chr1 13792296 13792391 -183403041 + L1M2 LINE L1 5517 5612 -685 4 690 485 308 59 8 chr1 13792588 13792827 -183402605 + MLT1A0 LTR MaLR 5 255 -110 4 690 3475 132 13 112 chr1 13792811 13793654 -183401778 - RMER17A2 LTR ERVK -146 760 1 4 690 361 167 1 94 chr1 13793876 13793970 -183401462 + MTEb LTR MaLR 1 87 -292 4 690 630 161 6 13 chr1 13793970 13794127 -183401305 + (TA)n Simple_repeat Simple_repeat 2 157 0 4 690 306 0 0 0 chr1 13794127 13794161 -183401271 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 690 264 360 87 13 chr1 13794179 13794328 -183401104 + MIRb SINE MIR 55 214 -54 4 690 251 114 23 0 chr1 13795037 13795081 -183400351 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 690 226 167 0 40 chr1 13795641 13795691 -183399741 + GA-rich Low_complexity Low_complexity 1 48 0 4 690 343 277 12 0 chr1 13796498 13796581 -183398851 - RSINE1 SINE B4 0 165 82 4 690 226 362 60 8 chr1 13796732 13796849 -183398583 - B4A SINE B4 -169 123 1 4 690 655 236 38 0 chr1 13797005 13797162 -183398270 - B4A SINE B4 -6 286 124 4 690 233 286 133 55 chr1 13797352 13797388 -183398044 - B3 SINE B2 -7 209 15 4 690 725 228 7 0 chr1 13797388 13797533 -183397899 - RSINE1 SINE B4 -4 161 16 4 690 539 242 38 0 chr1 13799106 13799238 -183396194 + ID_B1 SINE B4 84 220 -4 4 690 264 246 164 0 chr1 13799785 13799846 -183395586 + ID4_ SINE ID 2 72 -11 4 690 1251 235 56 15 chr1 13799958 13800299 -183395133 + ORR1E LTR MaLR 5 359 0 4 690 256 238 80 45 chr1 13800518 13800606 -183394826 - Lx8 LINE L1 -359 7114 7024 4 690 8594 93 85 3 chr1 13800622 13801893 -183393539 - Lx2 LINE L1 -1 6996 5622 4 690 1097 159 60 0 chr1 13801865 13802066 -183393366 - L1_Mm LINE L1 -1206 4677 4465 4 690 3297 87 43 85 chr1 13802066 13802669 -183392763 + RLTR13D6 LTR ERVK 83 660 -242 4 690 4360 41 0 0 chr1 13802669 13803178 -183392254 - L1Md_T LINE L1 0 6582 6074 4 690 15356 22 2 1 chr1 13803178 13804978 -183390454 - L1Md_A LINE L1 -2161 3722 1920 4 690 1859 106 35 25 chr1 13804978 13805297 -183390135 + RLTRETN_Mm LTR ERVK 1 322 0 4 690 29783 19 2 3 chr1 13805297 13808612 -183386820 + ETnERV-int LTR ERVK 1 3314 0 4 690 1858 109 31 22 chr1 13808612 13808931 -183386501 + RLTRETN_Mm LTR ERVK 1 322 0 4 690 8067 47 7 22 chr1 13808931 13810643 -183384789 - L1Md_A LINE L1 -3959 1924 244 4 690 514 212 77 24 chr1 13810645 13810814 -183384618 + RLTR13D6 LTR ERVK 642 819 -83 4 690 326 293 0 100 chr1 13810985 13811095 -183384337 - PB1D10 SINE Alu 0 117 19 4 690 321 26 0 0 chr1 13811973 13812011 -183383421 + (CAGC)n Simple_repeat Simple_repeat 2 39 0 4 690 609 14 0 0 chr1 13812133 13812203 -183383229 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 690 247 265 0 0 chr1 13812892 13812960 -183382472 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 4 690 406 255 99 0 chr1 13813457 13813598 -183381834 + ID_B1 SINE B4 1 155 -69 4 690 317 114 170 0 chr1 13813628 13813707 -183381725 - RLTR13B2 LTR ERVK -802 91 1 4 690 393 269 174 0 chr1 13813710 13813859 -183381573 - MTE2b LTR MaLR -202 177 3 4 690 555 268 60 0 chr1 13814458 13814626 -183380806 + B3A SINE B2 5 182 -16 4 690 243 125 0 0 chr1 13814626 13814666 -183380766 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 690 346 210 62 0 chr1 13815532 13815637 -183379795 - L1_Mur3 LINE L1 -7390 322 227 4 690 432 323 114 31 chr1 13815957 13816446 -183378986 - L1ME3A LINE L1 -225 5948 5419 4 690 3663 174 118 43 chr1 13817212 13818039 -183377393 - RMER19B LTR ERVK -13 889 1 4 690 180 296 107 57 chr1 13818083 13818205 -183377227 + L2b LINE L2 3220 3347 -28 4 690 1367 259 98 31 chr1 13818437 13818764 -183376668 + RCHARR1 DNA MER1_type 174 514 -460 4 690 233 29 0 29 chr1 13818764 13818799 -183376633 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 690 1367 259 98 31 chr1 13818799 13818925 -183376507 + RCHARR1 DNA MER1_type 515 663 -311 4 690 2245 144 35 3 chr1 13818925 13819295 -183376137 - RLTR14 LTR ERV1 0 382 1 4 690 1367 259 98 31 chr1 13819295 13819381 -183376051 + RCHARR1 DNA MER1_type 664 750 -224 4 690 1532 134 15 34 chr1 13819391 13819653 -183375779 + ORR1C1 LTR MaLR 1 257 -121 4 690 667 260 58 5 chr1 13819685 13819890 -183375542 + RCHARR1 DNA MER1_type 759 974 0 4 690 21 0 0 0 chr1 13820035 13820056 -183375376 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 712 292 6 6 chr1 13820339 13820501 -183374931 + RSINE1 SINE B4 4 165 0 4 690 480 263 222 2 chr1 13821061 13821304 -183374128 + Lx8 LINE L1 6390 6672 -801 4 690 253 342 17 43 chr1 13821292 13821408 -183374024 + Lx8 LINE L1 7114 7226 -247 4 690 670 162 0 14 chr1 13821408 13821546 -183373886 + GA-rich Low_complexity Low_complexity 2 137 0 4 690 379 278 138 58 chr1 13821940 13822200 -183373232 + B4A SINE B4 12 292 0 4 690 2506 196 97 10 chr1 13823444 13823938 -183371494 + Lx7 LINE L1 6878 7414 -282 4 690 260 143 0 18 chr1 13823954 13824011 -183371421 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 690 314 96 0 88 chr1 13824038 13824095 -183371337 - HAL1-3A_ME LINE L1 -831 2027 1976 4 690 426 39 0 0 chr1 13824146 13824198 -183371234 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 4 690 353 256 37 8 chr1 13824216 13824350 -183371082 + Lx7 LINE L1 7559 7696 0 4 690 545 254 15 0 chr1 13827652 13827782 -183367650 + B3A SINE B2 1 132 -66 4 690 230 125 21 0 chr1 13827798 13827846 -183367586 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 690 288 0 0 0 chr1 13827850 13827882 -183367550 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 690 305 354 89 14 chr1 13827926 13828218 -183367214 + L1M2 LINE L1 2247 2560 -4289 4 690 1319 212 68 0 chr1 13828285 13828577 -183366855 - MTC LTR MaLR -109 312 1 4 690 1613 304 38 41 chr1 13828644 13829782 -183365650 + L1M2 LINE L1 3511 4644 -2201 4 690 357 24 0 0 chr1 13829784 13829826 -183365606 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 4 690 1167 139 52 0 chr1 13829830 13830024 -183365408 - B3 SINE B2 -6 210 7 4 690 349 235 77 123 chr1 13830948 13831032 -183364400 + MER2 DNA MER2_type 20 110 -235 4 690 3049 82 18 2 chr1 13831032 13831433 -183363999 + MTB_Mm LTR MaLR 1 407 0 4 690 349 235 77 123 chr1 13831433 13831518 -183363914 + MER2 DNA MER2_type 111 181 -164 4 690 311 277 36 2 chr1 13831566 13831700 -183363732 + MER2 DNA MER2_type 151 296 -49 4 690 458 271 57 37 chr1 13831720 13831907 -183363525 - MLT1A1 LTR MaLR -58 350 179 4 690 228 67 0 0 chr1 13832356 13832386 -183363046 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 4 690 670 245 157 41 chr1 13833369 13833663 -183361769 - MLT1E3 LTR MaLR -236 388 61 4 690 1353 61 0 0 chr1 13835059 13835239 -183360193 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 690 525 330 63 26 chr1 13835265 13835536 -183359896 - B4A SINE B4 -7 285 5 4 690 216 344 44 0 chr1 13837789 13837879 -183357553 + MER5A DNA MER1_type 71 164 -25 4 690 189 107 0 0 chr1 13839188 13839216 -183356216 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 4 690 294 341 83 14 chr1 13840371 13840588 -183354844 - L1MB5 LINE L1 -77 6097 5866 4 690 536 257 58 7 chr1 13840638 13840775 -183354657 - RSINE1 SINE B4 -20 145 2 4 690 1642 154 61 69 chr1 13841797 13842159 -183353273 - ORR1B2 LTR MaLR -8 359 1 5 690 6264 63 8 2 chr1 13842574 13843372 -183352060 + L1Md_F2 LINE L1 4785 5586 -297 5 690 7008 72 43 16 chr1 13843373 13844342 -183351090 + L1Md_F2 LINE L1 5588 6582 0 5 690 623 264 22 38 chr1 13844720 13844905 -183350527 - B4 SINE B4 -110 182 1 5 690 246 105 0 0 chr1 13846297 13846335 -183349097 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 5 690 390 310 0 41 chr1 13847394 13847515 -183347917 - PB1D10 SINE Alu 0 117 2 5 690 879 63 0 0 chr1 13848252 13848379 -183347053 + (GA)n Simple_repeat Simple_repeat 2 128 0 5 690 180 349 80 27 chr1 13849492 13849642 -183345790 - MIRb SINE MIR -86 182 25 5 690 198 0 0 0 chr1 13850817 13850839 -183344593 + (CATG)n Simple_repeat Simple_repeat 1 22 0 5 690 290 292 0 10 chr1 13850840 13850937 -183344495 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 690 327 130 0 0 chr1 13852224 13852278 -183343154 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 690 1025 72 7 0 chr1 13852362 13852514 -183342918 + (CA)n Simple_repeat Simple_repeat 2 154 0 5 690 3080 65 32 16 chr1 13853133 13853572 -183341860 - L1_Mus3 LINE L1 -8 6630 6185 5 690 1008 104 14 0 chr1 13853573 13853595 -183341837 + L1_Mm LINE L1 4712 4735 -1148 5 690 351 0 0 0 chr1 13853595 13853634 -183341798 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 5 690 1008 104 14 0 chr1 13853634 13853755 -183341677 + L1_Mm LINE L1 4736 4856 -1027 5 690 1029 188 10 0 chr1 13855128 13855325 -183340107 - L1_Mur3 LINE L1 -2056 3824 3626 5 690 910 133 28 23 chr1 13855813 13855990 -183339442 + URR1B DNA MER1_type 48 225 0 5 690 1397 204 121 30 chr1 13856033 13856372 -183339060 + ORR1D1 LTR MaLR 1 370 -4 5 690 460 126 11 11 chr1 13858005 13858093 -183337339 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 5 690 182 351 27 0 chr1 13858151 13858225 -183337207 + MIR SINE MIR 42 117 -91 5 690 234 329 40 58 chr1 13858775 13858949 -183336483 + MIRb SINE MIR 97 267 -1 5 690 2335 108 6 6 chr1 13859133 13859460 -183335972 - ORR1A2 LTR MaLR 0 327 1 5 690 402 311 4 0 chr1 13859525 13859657 -183335775 - B1F2 SINE Alu -12 138 2 5 690 385 303 26 26 chr1 13860584 13860740 -183334692 - MER2 DNA MER2_type -57 288 133 5 690 858 232 132 42 chr1 13861031 13861319 -183334113 - MTD LTR MaLR -52 367 54 5 690 4091 137 152 24 chr1 13862551 13863461 -183331971 - RLTR25A LTR ERVK 0 1028 3 5 690 414 0 0 0 chr1 13863817 13863863 -183331569 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 5 690 1758 197 8 27 chr1 13863982 13864348 -183331084 - ORR1B2 LTR MaLR -8 359 1 5 690 11041 94 20 18 chr1 13864609 13866763 -183328669 + MusHAL1 LINE L1 184 2339 -1014 5 690 6607 128 6 2 chr1 13866762 13867749 -183327683 + Lx2 LINE L1 5651 6641 -356 5 690 1298 86 61 14 chr1 13867750 13867963 -183327469 + Lx2 LINE L1 6775 6997 0 5 690 561 268 68 68 chr1 13867990 13868330 -183327102 + ORSL-2b DNA Tip100 108 447 -61 5 690 237 207 45 68 chr1 13868673 13868761 -183326671 - MER77 LTR ERVL -17 590 505 5 690 1600 237 19 38 chr1 13868811 13869232 -183326200 - MTD LTR MaLR -6 413 1 5 690 21 0 0 0 chr1 13869550 13869571 -183325861 + AT_rich Low_complexity Low_complexity 1 21 0 5 690 247 192 25 19 chr1 13870013 13870103 -183325329 - L1M2 LINE L1 -419 5881 5791 5 690 1154 134 124 0 chr1 13870724 13870925 -183324507 - URR1A DNA MER1_type 0 226 1 5 690 614 25 25 0 chr1 13871733 13871812 -183323620 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 5 690 198 0 0 0 chr1 13871845 13871867 -183323565 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 690 343 293 148 39 chr1 13872240 13872524 -183322908 - L1MB2 LINE L1 -39 6132 5818 5 690 408 245 44 26 chr1 13872532 13872645 -183322787 - PB1D10 SINE Alu 0 117 3 5 690 495 207 136 0 chr1 13872914 13873083 -183322349 - Lx9 LINE L1 -21 7623 7432 5 690 31625 107 10 8 chr1 13873093 13879483 -183315949 - L1_Mus3 LINE L1 0 6638 233 5 690 1298 249 72 6 chr1 13879482 13879830 -183315602 - Lx9 LINE L1 -231 7413 7043 5 690 1008 179 41 5 chr1 13879839 13880035 -183315397 - Lx9 LINE L1 -1019 6625 6423 5 690 320 43 22 0 chr1 13880069 13880115 -183315317 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 5 690 1212 68 0 0 chr1 13880116 13880264 -183315168 - B1_Mus1 SINE Alu 0 148 1 5 690 288 310 0 0 chr1 13880397 13880468 -183314964 - RSINE1 SINE B4 -91 74 4 5 690 38704 42 0 3 chr1 13881098 13887534 -183307898 - L1Md_T LINE L1 0 6585 118 5 690 2412 176 99 10 chr1 13887835 13888351 -183307081 + L1_Mur2 LINE L1 4380 4941 -936 5 690 1426 276 43 6 chr1 13888349 13888828 -183306604 + Lx5 LINE L1 6027 6747 -713 5 690 207 0 0 0 chr1 13888828 13888851 -183306581 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 690 2253 253 44 26 chr1 13888851 13889441 -183305991 + Lx5 LINE L1 6455 7033 -17 5 690 1931 157 119 6 chr1 13889664 13890009 -183305423 + ORR1C2 LTR MaLR 1 384 0 5 690 1916 205 68 20 chr1 13890687 13891086 -183304346 + Lx9 LINE L1 6392 6809 -835 5 690 973 204 78 19 chr1 13891077 13891346 -183304086 + Lx9 LINE L1 7360 7644 0 5 690 198 0 0 0 chr1 13891657 13891679 -183303753 + (T)n Simple_repeat Simple_repeat 1 22 0 5 690 847 77 0 0 chr1 13892693 13892810 -183302622 - BGLII LTR ERVK -80 341 225 5 690 266 222 0 40 chr1 13892934 13893084 -183302348 + (TGG)n Simple_repeat Simple_repeat 2 145 0 5 690 403 254 35 9 chr1 13893359 13893474 -183301958 + B4A SINE B4 173 290 -2 5 691 351 288 38 0 chr1 13894389 13894469 -183300963 + PB1D7 SINE Alu 3 85 -35 5 691 234 0 0 0 chr1 13894490 13894516 -183300916 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 691 232 170 69 86 chr1 13894596 13894654 -183300778 - RMER12 LTR ERVK -1240 82 26 5 691 383 241 22 22 chr1 13895646 13895735 -183299697 + B1F1 SINE Alu 1 89 -60 5 691 343 289 106 43 chr1 13895819 13896007 -183299425 - HAL1-3A_ME LINE L1 -375 2483 2284 5 691 416 67 17 0 chr1 13896045 13896105 -183299327 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 691 260 238 48 36 chr1 13896259 13896342 -183299090 - MER46C DNA MER2_type -10 328 245 5 691 579 282 20 13 chr1 13896484 13896635 -183298797 + MTD LTR MaLR 51 202 -217 5 691 9985 65 1 0 chr1 13896639 13897900 -183297532 - L1Md_F2 LINE L1 -880 5003 3742 5 691 4897 51 5 0 chr1 13897899 13898507 -183296925 + L1Md_F2 LINE L1 4976 5586 -297 5 691 8844 27 8 7 chr1 13898507 13899502 -183295930 + L1Md_F2 LINE L1 5587 6582 0 5 691 675 269 117 11 chr1 13899502 13899690 -183295742 + MTD LTR MaLR 198 405 -14 5 691 370 244 13 0 chr1 13899796 13899874 -183295558 + L2a LINE L2 3347 3425 -1 5 691 564 29 0 0 chr1 13902103 13902173 -183293259 + (CAAAC)n Simple_repeat Simple_repeat 5 74 0 5 691 1302 40 0 0 chr1 13903034 13903186 -183292246 + L1Md_F2 LINE L1 5435 5586 -297 5 691 8720 38 3 8 chr1 13903186 13904187 -183291245 + L1Md_F2 LINE L1 5587 6582 0 5 691 342 0 0 0 chr1 13904249 13904287 -183291145 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 691 670 238 119 55 chr1 13904692 13904910 -183290522 + MTEa LTR MaLR 148 379 0 5 691 1108 272 85 42 chr1 13906511 13906864 -183288568 + ORR1D2 LTR MaLR 3 370 0 5 691 202 188 30 45 chr1 13907406 13907473 -183287959 + A-rich Low_complexity Low_complexity 4 69 0 5 691 3575 46 2 0 chr1 13907937 13908332 -183287100 + MTA_Mm LTR MaLR 1 396 0 5 691 255 274 126 28 chr1 13908461 13908583 -183286849 + MLT1A1 LTR MaLR 226 361 -47 5 691 2225 154 33 63 chr1 13909644 13910040 -183285392 - ORR1C2 LTR MaLR 0 384 1 5 691 882 179 23 11 chr1 13910040 13910215 -183285217 - ORR1C2-int LTR MaLR 0 1370 1194 5 691 243 286 226 0 chr1 13911222 13911306 -183284126 - RSINE1 SINE B4 -60 105 3 5 691 390 42 0 0 chr1 13911316 13911364 -183284068 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 691 672 201 29 15 chr1 13911364 13911500 -183283932 - B1_Mur4 SINE Alu 0 150 13 5 691 184 82 19 75 chr1 13911520 13911573 -183283859 + A-rich Low_complexity Low_complexity 1 50 0 5 691 5423 227 27 18 chr1 13911576 13912768 -183282664 - ORR1C2-int LTR MaLR -167 1203 1 5 691 2127 154 65 35 chr1 13912768 13913139 -183282293 - ORR1C2 LTR MaLR 0 384 3 5 691 438 141 78 148 chr1 13913141 13913263 -183282169 - ORR1C2 LTR MaLR -252 132 32 5 691 366 61 0 0 chr1 13913263 13913312 -183282120 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 691 438 141 78 148 chr1 13913312 13913331 -183282101 - ORR1C2 LTR MaLR -353 31 3 5 691 3549 233 59 47 chr1 13914024 13915383 -183280049 + Lx5 LINE L1 5342 6652 -406 5 691 378 0 0 0 chr1 13915383 13915425 -183280007 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 691 474 18 0 0 chr1 13915425 13915479 -183279953 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 691 3317 267 63 130 chr1 13915479 13915908 -183279524 + Lx5 LINE L1 6653 7053 -5 5 691 467 219 97 0 chr1 13916269 13916383 -183279049 + RMER15 LTR ERVL 434 558 -17 5 691 741 274 67 16 chr1 13916610 13916803 -183278629 + ID_B1 SINE B4 2 204 -20 5 691 186 43 0 0 chr1 13917383 13917406 -183278026 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 5 691 298 151 27 0 chr1 13917772 13917845 -183277587 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 691 204 167 0 0 chr1 13919425 13919473 -183275959 + T-rich Low_complexity Low_complexity 1 48 0 5 691 774 180 190 24 chr1 13919573 13919835 -183275597 - MTD LTR MaLR -1 418 1 5 691 263 284 27 0 chr1 13920924 13920998 -183274434 + CT-rich Low_complexity Low_complexity 1 76 0 5 691 674 244 104 33 chr1 13922144 13922326 -183273106 + B4 SINE B4 98 292 0 5 691 938 239 25 58 chr1 13922462 13922702 -183272730 + 7SK RNA RNA 6 237 -94 5 691 1465 50 28 0 chr1 13923158 13923339 -183272093 + B2_Mm2 SINE B2 1 186 -9 5 691 345 112 0 53 chr1 13923340 13923434 -183271998 + A-rich Low_complexity Low_complexity 1 89 0 5 691 261 0 0 0 chr1 13923769 13923798 -183271634 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 691 330 230 10 103 chr1 13923999 13924096 -183271336 + PB1D7 SINE Alu 31 118 -2 5 691 432 0 0 0 chr1 13924283 13924331 -183271101 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 691 539 279 38 38 chr1 13924338 13924573 -183270859 - L1M2 LINE L1 -1513 4630 4396 5 691 449 291 57 76 chr1 13924674 13925039 -183270393 + L1MA7 LINE L1 5919 6289 -23 5 691 24 0 0 0 chr1 13925462 13925486 -183269946 + AT_rich Low_complexity Low_complexity 1 24 0 5 691 25 31 0 0 chr1 13927105 13927137 -183268295 + AT_rich Low_complexity Low_complexity 1 32 0 5 691 964 169 13 7 chr1 13927239 13927388 -183268044 + B1_Mur4 SINE Alu 1 150 0 6 691 209 203 0 68 chr1 13927390 13927464 -183267968 + A-rich Low_complexity Low_complexity 1 69 0 6 691 358 270 71 9 chr1 13927476 13927496 -183267936 + B4 SINE B4 69 187 -105 6 691 618 152 0 0 chr1 13927496 13927588 -183267844 + PB1D9 SINE Alu 7 98 -22 6 691 774 84 0 0 chr1 13928032 13928139 -183267293 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 691 234 0 0 0 chr1 13928220 13928246 -183267186 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6 691 841 188 213 11 chr1 13928493 13928756 -183266676 - Lx9 LINE L1 -10 7634 7319 6 691 236 330 88 44 chr1 13929555 13929669 -183265763 + MLT1G LTR MaLR 46 164 -391 6 691 386 275 177 24 chr1 13929876 13930040 -183265392 + MLT1G LTR MaLR 390 578 -13 6 691 701 126 29 0 chr1 13930455 13930558 -183264874 + B2_Mm2 SINE B2 12 117 -78 6 691 358 88 49 24 chr1 13930626 13930708 -183264724 + GA-rich Low_complexity Low_complexity 3 86 0 6 691 611 197 93 27 chr1 13930708 13930891 -183264541 - RMER17A-int LTR ERVK -1533 195 1 6 691 6016 121 23 15 chr1 13930891 13931709 -183263723 - RMER17B LTR ERVK 0 958 136 6 691 6978 45 16 1 chr1 13931709 13932505 -183262927 - RLTR13C2 LTR ERVK 0 808 1 6 691 6016 121 23 15 chr1 13932505 13932636 -183262796 - RMER17B LTR ERVK -823 135 1 6 691 1264 146 0 0 chr1 13932636 13932828 -183262604 - Lx LINE L1 -127 6527 6336 6 691 344 221 9 80 chr1 13932828 13932941 -183262491 - RLTR25A LTR ERVK -678 425 321 6 691 7762 105 28 18 chr1 13932942 13934849 -183260583 - L1_Mus4 LINE L1 -7 6629 4723 6 691 180 0 0 0 chr1 13934981 13935001 -183260431 + (T)n Simple_repeat Simple_repeat 1 20 0 6 691 444 171 0 0 chr1 13935717 13935799 -183259633 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 691 250 269 60 76 chr1 13940232 13940417 -183255015 - MERVL-int LTR ERVL -1476 4009 3828 6 691 342 317 35 94 chr1 13940482 13940823 -183254609 - MYSERV6-int LTR ERVK -3124 5835 5515 6 691 5259 124 5 8 chr1 13940878 13942252 -183253180 + L1_Mus1 LINE L1 526 1959 -3927 6 691 10067 112 21 7 chr1 13942273 13942309 -183253123 + L1_Mus1 LINE L1 4381 4416 -1470 6 691 4191 56 0 8 chr1 13942309 13942810 -183252622 + L1Md_F2 LINE L1 6074 6570 -12 6 691 10067 98 13 4 chr1 13942810 13944939 -183250493 + L1_Mus1 LINE L1 4417 6569 -1 6 691 23 0 0 0 chr1 13945253 13945276 -183250156 + AT_rich Low_complexity Low_complexity 1 23 0 6 691 2772 51 0 0 chr1 13946058 13946390 -183249042 + IAPEY3_LTR LTR ERVK 1 332 0 6 691 12861 167 86 16 chr1 13946668 13949838 -183245594 - L1VL4 LINE L1 -1376 4507 1108 6 691 6643 79 6 2 chr1 13949859 13950793 -183244639 - L1_Mus2 LINE L1 0 6566 5629 6 691 2725 37 6 21 chr1 13950793 13951125 -183244307 + IAPLTR2b LTR ERVK 1 327 0 6 691 890 127 30 104 chr1 13951126 13951328 -183244104 + IAPEz-int LTR ERVK 9 195 -6286 6 691 235 239 0 0 chr1 13951328 13951374 -183244058 + RLTR27 LTR ERVK 223 268 -41 6 691 239 321 0 0 chr1 13951406 13951459 -183243973 + RLTR27 LTR ERVK 223 275 -34 6 691 3182 86 0 19 chr1 13951459 13952040 -183243392 + IAPEz-int LTR ERVK 168 662 -5819 6 691 2459 88 3 3 chr1 13952040 13952382 -183243050 + IAPEz-int LTR ERVK 1359 1700 -4781 6 691 5884 75 12 11 chr1 13952375 13953203 -183242229 + IAPEz-int LTR ERVK 5651 6479 -2 6 691 2659 37 9 9 chr1 13953205 13953532 -183241900 + IAPLTR2b LTR ERVK 1 327 0 6 691 13314 102 26 13 chr1 13953532 13953723 -183241709 - L1_Mm LINE L1 -249 5634 5455 6 691 3767 34 5 0 chr1 13953723 13954170 -183241262 - L1Md_T LINE L1 0 6582 6134 6 691 13314 102 26 13 chr1 13954170 13956085 -183239347 - L1_Mm LINE L1 -429 5454 3502 6 691 997 244 10 10 chr1 13956305 13956508 -183238924 + URR1B DNA MER1_type 22 224 -1 6 691 375 333 107 42 chr1 13956846 13957062 -183238370 + MLT1G LTR MaLR 49 278 -313 6 691 453 277 24 24 chr1 13957418 13957588 -183237844 + (TATG)n Simple_repeat Simple_repeat 3 172 0 6 691 23 0 0 0 chr1 13957963 13957986 -183237446 + AT_rich Low_complexity Low_complexity 1 23 0 6 691 1665 43 0 4 chr1 13958154 13958389 -183237043 + L1VL4 LINE L1 688 921 -5381 6 691 1913 215 7 18 chr1 13958412 13958867 -183236565 + L1VL4 LINE L1 340 789 -5513 6 691 23662 165 7 25 chr1 13958860 13959057 -183236375 + Lx LINE L1 1203 1399 -4484 6 691 1125 88 0 0 chr1 13959057 13959205 -183236227 + B1_Mus1 SINE Alu 1 148 0 6 691 23662 157 10 22 chr1 13959205 13964541 -183230891 + Lx LINE L1 1400 6653 -1 6 691 342 164 15 0 chr1 13965577 13965644 -183229788 - MADE2 DNA Mariner -7 73 6 6 691 213 65 0 0 chr1 13965847 13965878 -183229554 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 691 38 51 0 0 chr1 13965961 13966020 -183229412 + AT_rich Low_complexity Low_complexity 1 59 0 6 691 2203 51 4 0 chr1 13966020 13966296 -183229136 - L1Md_A LINE L1 0 6582 6306 6 691 7669 44 1 1 chr1 13966316 13967404 -183228028 - L1Md_F2 LINE L1 -15 6567 5479 6 691 450 0 0 0 chr1 13967706 13967756 -183227676 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 6 691 198 0 0 0 chr1 13967860 13967882 -183227550 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 691 1241 161 37 5 chr1 13968132 13968350 -183227082 - URR1A DNA MER1_type -1 225 1 6 691 359 250 36 0 chr1 13970471 13970555 -183224877 - MTEa LTR MaLR 0 379 293 6 691 230 246 103 44 chr1 13970746 13970814 -183224618 - ID2 SINE ID -10 73 2 6 691 1021 226 45 111 chr1 13970957 13971361 -183224071 + MTE2a LTR MaLR 1 377 -2 6 691 1214 225 115 49 chr1 13971451 13971877 -183223555 + Lx2B LINE L1 6547 7000 0 6 691 486 0 0 0 chr1 13972008 13972062 -183223370 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 691 291 330 66 0 chr1 13972269 13972360 -183223072 - MTEa LTR MaLR -236 143 47 6 691 843 268 73 43 chr1 13972510 13972880 -183222552 - ERVL-int LTR ERVL -115 5642 5262 6 691 839 308 184 13 chr1 13972928 13973452 -183221980 + MTE-int LTR MaLR 25 638 -942 6 691 421 297 92 31 chr1 13973470 13973679 -183221753 - MTEa LTR MaLR 0 379 139 6 691 252 214 56 28 chr1 13973718 13973790 -183221642 - MTEa LTR MaLR -295 79 6 6 691 1365 231 80 28 chr1 13974080 13974432 -183221000 - ORR1C1 LTR MaLR -8 370 1 6 691 283 314 68 43 chr1 13975019 13975182 -183220250 + LTR86A2 LTR ERVL 156 322 -186 6 691 264 235 0 0 chr1 13975376 13975444 -183219988 + (CACCAT)n Simple_repeat Simple_repeat 4 71 0 6 691 2080 247 102 54 chr1 13976955 13977437 -183217995 + Lx5 LINE L1 5995 6444 -606 6 691 459 0 0 0 chr1 13977437 13977488 -183217944 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 691 2080 269 101 113 chr1 13977488 13978015 -183217417 + Lx5 LINE L1 6445 7031 -19 6 691 204 40 0 0 chr1 13978026 13978051 -183217381 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 691 229 242 150 10 chr1 13978215 13978315 -183217117 - Lx9 LINE L1 0 7644 7531 6 691 1217 228 90 15 chr1 13978328 13978671 -183216761 - Lx9 LINE L1 -282 7362 6994 6 691 612 219 45 58 chr1 13978691 13978905 -183216527 - Lx9 LINE L1 -1709 5935 5711 6 691 896 352 40 14 chr1 13978933 13979210 -183216222 + B4A SINE B4 9 292 0 6 691 30 89 0 0 chr1 13979238 13979317 -183216115 + AT_rich Low_complexity Low_complexity 1 79 0 6 691 339 282 26 0 chr1 13980275 13980353 -183215079 + PB1 SINE Alu 34 113 -14 6 691 1288 254 47 33 chr1 13980417 13980781 -183214651 - MTD LTR MaLR -15 364 1 6 691 22 56 0 0 chr1 13981351 13981387 -183214045 + AT_rich Low_complexity Low_complexity 1 36 0 6 691 195 357 189 0 chr1 13981437 13981580 -183213852 + MIR SINE MIR 37 206 -56 6 691 410 167 12 0 chr1 13982726 13982810 -183212622 + CT-rich Low_complexity Low_complexity 3 87 0 6 691 22 0 0 0 chr1 13983441 13983463 -183211969 + AT_rich Low_complexity Low_complexity 1 22 0 6 691 291 276 215 7 chr1 13984429 13984564 -183210868 + RSINE1 SINE B4 3 165 0 6 691 182 258 21 0 chr1 13984632 13984725 -183210707 + (CATA)n Simple_repeat Simple_repeat 4 98 0 6 691 1615 38 56 14 chr1 13984892 13985105 -183210327 - L1Md_F2 LINE L1 -2 6580 6359 6 691 2678 42 0 0 chr1 13985105 13985438 -183209994 + L1Md_F2 LINE L1 6020 6352 -230 6 691 357 24 0 0 chr1 13986986 13987028 -183208404 + (TTCTC)n Simple_repeat Simple_repeat 4 45 0 6 691 274 292 28 106 chr1 13988427 13988607 -183206825 + MIR SINE MIR 9 174 -88 6 691 2929 24 0 3 chr1 13988655 13988993 -183206439 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 691 1117 78 0 0 chr1 13989626 13989767 -183205665 + B1_Mus1 SINE Alu 2 142 -6 6 691 430 276 173 30 chr1 13990181 13990349 -183205083 + B4A SINE B4 44 235 -57 6 691 486 75 0 0 chr1 13990373 13990440 -183204992 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 691 429 20 0 0 chr1 13990440 13990489 -183204943 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 691 513 296 56 12 chr1 13993505 13993666 -183201766 - ORR1D1 LTR MaLR -203 171 4 6 691 560 301 124 17 chr1 13993958 13994222 -183201210 - MLT1A0 LTR MaLR -49 316 23 6 691 21 0 0 0 chr1 13994920 13994941 -183200491 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 210 191 0 0 chr1 13995341 13995383 -183200049 + GA-rich Low_complexity Low_complexity 4 45 0 6 691 889 160 11 0 chr1 13995388 13995499 -183199933 + G-rich Low_complexity Low_complexity 2 114 0 6 691 1085 123 6 0 chr1 13995499 13995678 -183199754 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 6 691 889 160 11 0 chr1 13995678 13995741 -183199691 + G-rich Low_complexity Low_complexity 115 177 0 6 691 249 139 0 0 chr1 13995746 13995789 -183199643 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 6 691 10608 85 5 0 chr1 13996514 13998842 -183196590 + L1_Mus1 LINE L1 4299 6567 0 6 691 461 308 10 0 chr1 13998927 13999031 -183196401 - B4A SINE B4 -187 105 1 6 691 247 375 106 58 chr1 13999724 13999999 -183195433 + MLT1A LTR MaLR 18 305 -69 6 691 219 36 0 0 chr1 14002453 14002481 -183192951 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 691 958 248 17 25 chr1 14002925 14003161 -183192271 + 7SLRNA srpRNA srpRNA 71 304 -10 2 691 601 206 45 55 chr1 14003167 14003367 -183192065 + Lx7 LINE L1 7496 7693 -3 3 691 242 289 0 0 chr1 14003367 14003419 -183192013 + B4A SINE B4 223 274 -18 4 691 657 257 43 11 chr1 14003771 14003956 -183191476 - Lx9 LINE L1 -374 7270 7080 5 691 1466 87 41 0 chr1 14004042 14004260 -183191172 - L1_Mus3 LINE L1 -12 6626 6400 6 691 1075 116 6 0 chr1 14004332 14004505 -183190927 - Lx LINE L1 -5 6649 6476 7 691 4514 65 0 0 chr1 14004517 14005084 -183190348 + L1_Mus1 LINE L1 6001 6567 0 8 691 603 0 0 0 chr1 14005092 14005159 -183190273 + (GAAAA)n Simple_repeat Simple_repeat 4 70 0 9 691 1891 161 40 42 chr1 14005162 14005539 -183189893 - Lx LINE L1 -183 6471 6096 7 691 398 58 0 0 chr1 14005537 14005589 -183189843 - Lx LINE L1 -747 5907 5856 7 691 339 272 159 8 chr1 14005646 14005925 -183189507 - L1M2 LINE L1 -516 5664 5331 1 691 315 65 0 0 chr1 14009270 14009316 -183186116 + (A)n Simple_repeat Simple_repeat 1 46 0 1 691 1162 300 60 42 chr1 14010396 14010849 -183184583 - Lx8 LINE L1 -190 7283 6823 1 691 414 0 0 0 chr1 14010889 14010935 -183184497 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 691 22187 164 12 12 chr1 14010935 14013624 -183181808 - Lx LINE L1 -15 6639 3940 1 691 3418 33 0 2 chr1 14013624 14014021 -183181411 - MTA_Mm LTR MaLR 0 396 1 1 691 22187 161 15 14 chr1 14014021 14017582 -183177850 - Lx LINE L1 -1947 3939 389 1 691 783 205 105 0 chr1 14017583 14017754 -183177678 - B3 SINE B2 -25 191 3 1 691 220 266 0 0 chr1 14018025 14018089 -183177343 + T-rich Low_complexity Low_complexity 2 65 0 1 691 33404 82 9 13 chr1 14018101 14024568 -183170864 - L1Md_F2 LINE L1 -3 6579 238 1 691 465 76 0 0 chr1 14024570 14024636 -183170796 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 1 692 757 168 153 7 chr1 14024874 14025024 -183170408 - URR1A DNA MER1_type -54 172 1 2 692 213 302 9 94 chr1 14025193 14025299 -183170133 - MER5A DNA MER1_type -46 143 47 2 692 525 295 50 14 chr1 14025339 14025480 -183169952 - MTEb LTR MaLR -233 146 1 2 692 182 320 0 0 chr1 14026474 14026524 -183168908 + MIRb SINE MIR 126 175 -93 2 692 1043 103 0 7 chr1 14026759 14026906 -183168526 - B1_Mus1 SINE Alu -1 147 2 2 692 279 71 0 0 chr1 14028917 14028959 -183166473 + (A)n Simple_repeat Simple_repeat 1 42 0 2 692 215 328 42 17 chr1 14030124 14030242 -183165190 + CT-rich Low_complexity Low_complexity 2 122 0 2 692 300 262 0 36 chr1 14030128 14030211 -183165221 + C-rich Low_complexity Low_complexity 1 80 0 2 692 341 298 34 39 chr1 14030356 14030534 -183164898 - L1MA4 LINE L1 -459 5841 5665 2 692 243 203 16 58 chr1 14030569 14030757 -183164675 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 692 390 42 0 0 chr1 14030806 14030854 -183164578 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 692 394 348 15 0 chr1 14030892 14031027 -183164405 + L2 LINE L2 2598 2734 -685 3 692 183 375 34 0 chr1 14032783 14032871 -183162561 + MIR SINE MIR 23 113 -149 3 692 203 352 81 27 chr1 14033020 14033131 -183162301 - MIR SINE MIR -129 133 17 3 692 7063 117 18 23 chr1 14034776 14036616 -183158816 - Lx LINE L1 -4 6650 4814 3 692 395 144 11 78 chr1 14038174 14038264 -183157168 - MTE2a LTR MaLR -10 369 286 3 692 322 162 40 81 chr1 14038302 14038376 -183157056 - MTE2a LTR MaLR -308 71 1 3 692 1778 129 64 13 chr1 14038544 14038857 -183156575 + ORR1A4 LTR MaLR 1 329 0 3 692 445 227 6 6 chr1 14039745 14039918 -183155514 + (CA)n Simple_repeat Simple_repeat 2 174 0 3 692 1506 46 5 0 chr1 14040444 14040640 -183154792 + L1_Mus2 LINE L1 6369 6565 -1 3 692 849 164 6 17 chr1 14040668 14040848 -183154584 + GA-rich Low_complexity Low_complexity 3 180 0 3 692 474 252 5 10 chr1 14040893 14041106 -183154326 + CT-rich Low_complexity Low_complexity 1 211 0 4 692 31 58 0 0 chr1 14042286 14042338 -183153094 + AT_rich Low_complexity Low_complexity 1 52 0 4 692 446 114 13 0 chr1 14042755 14042834 -183152598 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 692 22 35 0 0 chr1 14043703 14043732 -183151700 + AT_rich Low_complexity Low_complexity 1 29 0 4 692 21 0 0 0 chr1 14044457 14044478 -183150954 + AT_rich Low_complexity Low_complexity 1 21 0 4 692 475 158 11 52 chr1 14044976 14045080 -183150352 + MTE2a LTR MaLR 271 375 -4 4 692 504 0 0 0 chr1 14047033 14047089 -183148343 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 4 692 1347 80 0 6 chr1 14047089 14047323 -183148109 + (TTTC)n Simple_repeat Simple_repeat 1 232 0 4 692 1069 123 6 6 chr1 14047323 14047503 -183147929 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 692 1005 107 0 27 chr1 14047503 14047637 -183147795 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 4 692 717 176 6 33 chr1 14047639 14047705 -183147727 + polypyrimidine Low_complexity Low_complexity 114 179 0 5 692 1025 126 11 0 chr1 14047705 14047879 -183147553 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 5 692 717 176 6 33 chr1 14047879 14047942 -183147490 + polypyrimidine Low_complexity Low_complexity 54 113 0 5 692 1003 127 6 6 chr1 14047942 14048116 -183147316 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 5 692 717 176 6 33 chr1 14048116 14048167 -183147265 + polypyrimidine Low_complexity Low_complexity 3 53 0 5 692 251 240 93 0 chr1 14048741 14048816 -183146616 - MamRep605 Unknown Unknown -414 462 381 5 692 207 0 0 0 chr1 14049892 14049915 -183145517 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 692 351 0 0 0 chr1 14049915 14049953 -183145479 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 692 342 0 0 0 chr1 14050254 14050292 -183145140 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 692 302 0 0 0 chr1 14050496 14050534 -183144898 - MERVL-int LTR ERVL 0 5485 5448 5 692 311 192 13 40 chr1 14050534 14050610 -183144822 - ORR1A3-int LTR MaLR -1323 640 567 6 692 1382 128 204 7 chr1 14050610 14050909 -183144523 - MERVL-int LTR ERVL -132 5629 5272 6 692 1072 119 40 0 chr1 14051051 14051228 -183144204 - MERVL-int LTR ERVL -320 5165 4982 6 692 8652 88 14 3 chr1 14051228 14052437 -183142995 - MERVL-int LTR ERVL -944 4541 3320 6 692 276 279 76 125 chr1 14052845 14053029 -183142403 + RLTR24 LTR ERV1 285 459 -70 6 692 2473 113 71 3 chr1 14054057 14054439 -183140993 - Lx2 LINE L1 0 6997 6590 6 692 1749 243 21 48 chr1 14054439 14054905 -183140527 - RMER19C LTR ERVK -20 591 138 6 692 2948 169 49 18 chr1 14055441 14055546 -183139886 + Lx5 LINE L1 5050 5154 -723 6 692 219 69 0 0 chr1 14055546 14055575 -183139857 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 692 2948 169 49 18 chr1 14055575 14056066 -183139366 + Lx5 LINE L1 5155 5663 -214 6 692 8487 66 2 2 chr1 14056097 14057171 -183138261 - L1Md_F2 LINE L1 -42 5841 4768 6 692 5642 68 16 30 chr1 14057170 14057931 -183137501 + L1Md_F2 LINE L1 5820 6569 -13 6 692 562 164 23 54 chr1 14057968 14058097 -183137335 + Lx5 LINE L1 5776 5903 -1147 6 692 1621 232 25 8 chr1 14058099 14058498 -183136934 + RMER20A LTR ERVK 3 408 -108 6 692 4400 238 45 11 chr1 14058557 14059650 -183135782 + Lx5 LINE L1 5888 7045 -5 6 692 1869 155 0 10 chr1 14059669 14059982 -183135450 + MTC LTR MaLR 104 413 -8 6 692 4629 135 58 26 chr1 14060001 14060908 -183134524 + MTC-int LTR MaLR 128 1063 -195 7 692 414 0 0 0 chr1 14060921 14060967 -183134465 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 7 692 594 160 0 161 chr1 14060970 14061119 -183134313 - B1_Mur4 SINE Alu -2 148 24 7 692 747 112 134 17 chr1 14061131 14061303 -183134129 + MTC-int LTR MaLR 1067 1258 0 7 692 1930 171 97 30 chr1 14061303 14061517 -183133915 + MTC LTR MaLR 1 240 -181 7 692 705 24 0 0 chr1 14061517 14061600 -183133832 + (CA)n Simple_repeat Simple_repeat 1 83 0 7 692 1930 171 97 30 chr1 14061600 14061778 -183133654 + MTC LTR MaLR 241 418 -3 7 692 801 208 0 0 chr1 14061800 14061973 -183133459 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 7 692 9882 181 78 16 chr1 14061973 14064320 -183131112 - L1_Rod LINE L1 -2185 3662 1171 7 692 3194 217 30 13 chr1 14064389 14065093 -183130339 - L1_Rod LINE L1 -6439 1169 454 7 692 497 304 16 27 chr1 14065088 14065274 -183130158 - L1_Rod LINE L1 -6919 253 70 7 692 236 238 62 22 chr1 14065621 14065755 -183129677 - MIR3 SINE MIR -38 170 29 7 692 447 233 10 10 chr1 14067356 14067460 -183127972 - B1_Mur1 SINE Alu -5 144 41 7 692 282 316 41 49 chr1 14067463 14067586 -183127846 - MIRb SINE MIR -113 155 34 7 692 22 0 0 0 chr1 14067642 14067664 -183127768 + AT_rich Low_complexity Low_complexity 1 22 0 8 692 244 321 8 51 chr1 14067764 14067882 -183127550 + MER5A1 DNA MER1_type 48 160 -6 8 692 1055 292 71 36 chr1 14068460 14069040 -183126392 - L1MA4 LINE L1 -408 5892 5293 8 692 771 272 73 130 chr1 14069369 14069670 -183125762 - MTD LTR MaLR 0 419 139 8 692 2371 109 8 140 chr1 14069670 14070148 -183125284 + RLTR9F LTR ERVK 1 415 0 8 692 771 272 73 130 chr1 14070148 14070285 -183125147 - MTD LTR MaLR -281 138 6 8 692 14793 110 8 11 chr1 14070299 14070478 -183124954 + L1_Mus2 LINE L1 3088 3265 -2618 8 692 4275 65 39 7 chr1 14070478 14071021 -183124411 + LTRIS2 LTR ERV1 5 564 0 8 692 14793 110 8 11 chr1 14071021 14072891 -183122541 + L1_Mus2 LINE L1 3266 5139 -744 8 692 3414 33 5 0 chr1 14072891 14073285 -183122147 + MTA_Mm LTR MaLR 1 396 0 8 692 9792 20 0 0 chr1 14073285 14074383 -183121049 + MTA_Mm-int LTR MaLR 1 1098 0 8 692 3445 33 2 0 chr1 14074383 14074778 -183120654 + MTA_Mm LTR MaLR 1 396 0 8 692 14793 110 8 11 chr1 14074778 14074954 -183120478 + L1_Mus2 LINE L1 5140 5309 -574 8 692 36067 53 0 4 chr1 14074950 14080802 -183114630 + L1Md_T LINE L1 1 5589 -297 8 692 8600 33 0 0 chr1 14080802 14081798 -183113634 + L1Md_T LINE L1 5590 6585 0 8 692 2539 44 0 0 chr1 14081812 14082110 -183113322 + L1Md_F2 LINE L1 5288 5585 -298 8 692 8313 42 0 8 chr1 14082111 14083115 -183112317 + L1Md_F2 LINE L1 5587 6582 0 8 692 25 31 0 0 chr1 14083115 14083147 -183112285 + AT_rich Low_complexity Low_complexity 1 32 0 9 692 7374 73 21 3 chr1 14083154 14084339 -183111093 + L1_Mus2 LINE L1 5357 6560 -6 8 692 4284 17 0 0 chr1 14084655 14085134 -183110298 - L1Md_A LINE L1 0 6582 6104 9 692 579 29 0 0 chr1 14085312 14085381 -183110051 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 692 743 169 0 43 chr1 14085386 14085571 -183109861 + GA-rich Low_complexity Low_complexity 3 179 0 9 692 2959 111 29 45 chr1 14085650 14086140 -183109292 + RLTR45 LTR ERVK 1 482 0 9 692 238 258 97 0 chr1 14086177 14086270 -183109162 - MER31A LTR ERV1 -382 103 2 9 692 955 180 94 57 chr1 14088407 14088619 -183106813 - URR1B DNA MER1_type -1 224 5 9 692 250 180 32 32 chr1 14090431 14090494 -183104938 - MTEb LTR MaLR -23 356 294 9 692 1095 219 37 37 chr1 14092263 14092505 -183102927 + RMER1B Other Other 1 242 -824 9 692 1446 156 8 16 chr1 14092510 14092758 -183102674 + RMER1B Other Other 462 707 -359 9 692 4334 128 24 16 chr1 14092758 14093520 -183101912 + ORR1A2-int LTR MaLR 1196 1963 0 9 692 2467 95 3 0 chr1 14093521 14093846 -183101586 + ORR1A2 LTR MaLR 2 327 0 9 692 242 232 41 21 chr1 14094903 14095000 -183100432 - Lx9 LINE L1 -33 7611 7513 1 692 1679 102 138 66 chr1 14095046 14095350 -183100082 - ORR1A3 LTR MaLR 0 326 1 1 692 212 234 99 49 chr1 14095505 14095556 -183099876 - B1F SINE Alu -42 107 52 1 692 3016 75 22 125 chr1 14095556 14096093 -183099339 - RLTR45 LTR ERVK 0 482 1 1 692 212 234 99 49 chr1 14096093 14096122 -183099310 - B1F SINE Alu -98 51 23 1 692 602 298 129 31 chr1 14097406 14097731 -183097701 - MLT1A0 LTR MaLR 0 365 9 1 692 820 187 9 9 chr1 14097740 14097963 -183097469 + CT-rich Low_complexity Low_complexity 1 223 0 1 692 405 0 0 0 chr1 14099029 14099074 -183096358 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 692 2406 196 148 7 chr1 14100529 14101136 -183094296 - Lx9 LINE L1 0 7644 6952 1 692 271 194 29 15 chr1 14101549 14101617 -183093815 + ERVL-int LTR ERVL 5665 5733 -24 1 692 402 275 61 8 chr1 14101651 14101783 -183093649 + MLT2C1 LTR ERVL 28 166 -231 1 692 249 259 51 51 chr1 14101784 14101902 -183093530 - MLT1A1 LTR MaLR 0 408 291 1 692 350 269 122 69 chr1 14102170 14102358 -183093074 + MLT2C1 LTR ERVL 200 563 0 1 692 297 0 0 0 chr1 14102704 14102737 -183092695 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 692 2867 166 7 13 chr1 14102752 14103289 -183092143 + L1_Mur2 LINE L1 4728 5236 -641 1 692 36083 36 1 0 chr1 14103320 14109165 -183086267 + L1Md_T LINE L1 1 5589 -297 1 692 9082 10 0 0 chr1 14109165 14110161 -183085271 + L1Md_T LINE L1 5590 6585 0 1 692 457 355 98 33 chr1 14110394 14110843 -183084589 - MER20B DNA MER1_type -68 715 238 1 692 234 307 23 0 chr1 14111445 14111533 -183083899 - MTEa LTR MaLR -3 376 287 1 692 1485 137 143 75 chr1 14111655 14111963 -183083469 - ORR1A4 LTR MaLR 0 329 1 1 692 372 252 40 0 chr1 14112103 14112202 -183083230 - MLT2B3 LTR ERVL -449 105 3 1 692 468 316 0 22 chr1 14112748 14112884 -183082548 - ID_B1 SINE B4 -8 216 84 1 692 256 355 0 0 chr1 14112925 14113001 -183082431 - ID4_ SINE ID 0 83 8 1 692 1951 87 65 26 chr1 14113097 14113404 -183082028 - L1_Mus3 LINE L1 -14 6624 6306 1 692 1002 62 6 132 chr1 14113636 14113803 -183081629 + B1_Mm SINE Alu 2 147 0 1 692 194 74 55 18 chr1 14113810 14113865 -183081567 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 1 692 450 179 0 0 chr1 14115134 14115229 -183080203 + CT-rich Low_complexity Low_complexity 3 97 0 1 692 180 111 0 0 chr1 14117205 14117232 -183078200 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 692 951 272 58 11 chr1 14117279 14117554 -183077878 + B4 SINE B4 1 288 -4 1 692 200 291 19 28 chr1 14118829 14118935 -183076497 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 692 710 235 70 57 chr1 14120502 14120732 -183074700 + Lx8 LINE L1 6749 6981 -492 1 692 513 329 41 9 chr1 14120769 14120990 -183074442 + Lx8 LINE L1 7114 7341 -132 1 692 465 133 0 0 chr1 14121096 14121171 -183074261 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 692 528 338 5 70 chr1 14121386 14121595 -183073837 + B3A SINE B2 2 190 -26 1 692 3011 149 128 26 chr1 14121667 14122293 -183073139 - RMER6C LTR ERVK 0 690 1 1 692 5515 95 123 14 chr1 14122766 14123629 -183071803 + RMER17B LTR ERVK 1 957 -1 1 692 1209 76 128 0 chr1 14123796 14123968 -183071464 + B2_Mm2 SINE B2 2 195 0 1 692 252 0 0 0 chr1 14124764 14124792 -183070640 + (A)n Simple_repeat Simple_repeat 1 28 0 1 692 441 309 61 54 chr1 14124999 14125146 -183070286 - B4 SINE B4 -144 148 1 1 692 273 29 0 0 chr1 14125199 14125233 -183070199 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 692 209 0 98 0 chr1 14125952 14125993 -183069439 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 692 225 0 0 0 chr1 14126031 14126056 -183069376 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 692 475 356 26 22 chr1 14126305 14126532 -183068900 + MamSINE1 SINE tRNA 32 259 -31 1 692 672 259 62 22 chr1 14127864 14128042 -183067390 - B3A SINE B2 -6 192 8 1 692 269 331 172 0 chr1 14128310 14128467 -183066965 + MER5A DNA MER1_type 1 184 -5 1 692 186 43 0 0 chr1 14129209 14129232 -183066200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 692 281 326 0 0 chr1 14129551 14129649 -183065783 + L1MA6 LINE L1 6202 6299 -1 1 692 479 17 17 0 chr1 14130264 14130324 -183065108 + (TTTTG)n Simple_repeat Simple_repeat 3 63 0 1 692 235 257 106 8 chr1 14131666 14131732 -183063700 - L2b LINE L2 -2 3385 3308 1 692 213 303 15 0 chr1 14132054 14132120 -183063312 + MIRm SINE MIR 208 274 -2 1 692 893 154 115 6 chr1 14132640 14132823 -183062609 - ORR1C1 LTR MaLR -8 376 174 1 692 311 141 16 0 chr1 14132845 14132909 -183062523 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 692 922 173 16 26 chr1 14132909 14133099 -183062333 - ORR1C1 LTR MaLR -190 188 1 1 692 1414 219 111 14 chr1 14133110 14133480 -183061952 - MTC LTR MaLR -8 413 8 1 692 279 0 0 0 chr1 14133637 14133668 -183061764 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 692 575 27 14 0 chr1 14135612 14135685 -183059747 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 1 692 232 228 88 0 chr1 14136561 14136618 -183058814 + PB1D10 SINE Alu 8 69 -48 1 692 301 253 0 37 chr1 14136695 14136777 -183058655 + CT-rich Low_complexity Low_complexity 2 80 0 1 692 232 280 13 13 chr1 14137883 14137959 -183057473 - MER3 DNA MER1_type -105 104 29 1 692 204 40 0 0 chr1 14139109 14139134 -183056298 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 692 297 0 0 0 chr1 14139237 14139270 -183056162 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 692 817 277 155 6 chr1 14139828 14140144 -183055288 - MTEa LTR MaLR -12 367 5 1 692 296 295 197 76 chr1 14140154 14140352 -183055080 + B4 SINE B4 49 270 -22 1 692 393 22 0 0 chr1 14140358 14140404 -183055028 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 692 1574 235 23 40 chr1 14142542 14142614 -183052818 - MTD LTR MaLR -16 403 336 1 692 2099 160 71 6 chr1 14142614 14142978 -183052454 - ORR1B1 LTR MaLR -3 391 4 1 692 1574 235 23 40 chr1 14142978 14143304 -183052128 - MTD LTR MaLR -84 335 12 1 692 325 291 103 26 chr1 14143315 14143470 -183051962 + L1M3 LINE L1 4915 5081 -1059 1 692 1150 271 38 35 chr1 14143949 14144289 -183051143 - MTE2b LTR MaLR -38 341 1 1 692 276 361 31 0 chr1 14144637 14144767 -183050665 + ORR1E LTR MaLR 4 137 -222 1 692 21 0 0 0 chr1 14145474 14145495 -183049937 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 2667 25 0 47 chr1 14146085 14146423 -183049009 - RLTRETN_Mm LTR ERVK 0 322 1 1 692 768 256 72 36 chr1 14146475 14146751 -183048681 - B4A SINE B4 -6 286 1 1 692 307 250 59 10 chr1 14146802 14146903 -183048529 - L1M5 LINE L1 -1583 4563 4458 1 692 3991 96 4 0 chr1 14147065 14147606 -183047826 - L1_Mus3 LINE L1 -274 5609 5067 1 692 7950 71 4 2 chr1 14147605 14148626 -183046806 + L1_Mus3 LINE L1 5616 6638 0 1 692 8111 30 0 0 chr1 14148838 14149771 -183045661 + L1Md_T LINE L1 5650 6582 0 1 692 297 0 0 0 chr1 14149791 14149824 -183045608 + (A)n Simple_repeat Simple_repeat 1 33 0 1 692 392 138 25 53 chr1 14149880 14149976 -183045456 + L1_Mus3 LINE L1 5864 5957 -625 1 692 273 240 109 10 chr1 14150390 14150491 -183044941 - L1MB4 LINE L1 -237 5943 5833 1 692 381 224 93 0 chr1 14150680 14150787 -183044645 + ID_B1 SINE B4 1 117 -107 1 692 1129 139 52 14 chr1 14154860 14155072 -183040360 + URR1B DNA MER1_type 1 220 -5 1 692 618 279 122 56 chr1 14155462 14155732 -183039700 + MTEa LTR MaLR 41 328 -51 1 693 262 343 28 7 chr1 14157442 14157583 -183037849 + L2 LINE L2 2742 2885 -534 1 693 2248 48 0 0 chr1 14158009 14158279 -183037153 + L1Md_T LINE L1 6312 6581 -1 1 693 30 45 0 0 chr1 14159364 14159408 -183036024 + AT_rich Low_complexity Low_complexity 1 44 0 1 693 23 0 0 0 chr1 14159775 14159798 -183035634 + AT_rich Low_complexity Low_complexity 1 23 0 1 693 384 59 0 0 chr1 14159975 14160026 -183035406 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 693 278 176 0 0 chr1 14160457 14160508 -183034924 + L1MB7 LINE L1 6132 6182 -2 1 693 308 43 22 0 chr1 14162889 14162935 -183032497 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 693 1751 104 37 86 chr1 14164357 14164682 -183030750 + L1_Mur1 LINE L1 4464 4772 -1114 1 693 839 161 28 22 chr1 14164755 14164933 -183030499 - URR1B DNA MER1_type 0 225 47 1 693 27 29 0 0 chr1 14165164 14165198 -183030234 + AT_rich Low_complexity Low_complexity 1 34 0 1 693 560 154 10 0 chr1 14166227 14166331 -183029101 + CT-rich Low_complexity Low_complexity 3 107 0 1 693 227 254 17 0 chr1 14166349 14166408 -183029024 - AluF_3 SINE Alu -115 196 137 1 693 25 31 0 0 chr1 14168479 14168511 -183026921 + AT_rich Low_complexity Low_complexity 1 32 0 1 693 491 301 138 64 chr1 14168550 14168926 -183026506 + MLT1A1 LTR MaLR 5 408 0 1 693 500 245 123 0 chr1 14169838 14170001 -183025431 - RMER30 DNA MER1_type -19 183 1 1 693 232 237 179 54 chr1 14170950 14171045 -183024387 - ID4 SINE ID -49 103 1 1 693 191 217 22 0 chr1 14172158 14172204 -183023228 + MIR SINE MIR 96 142 -120 1 693 3485 41 8 0 chr1 14172590 14172983 -183022449 + MTA_Mm LTR MaLR 1 396 0 1 693 23 0 0 0 chr1 14174834 14174857 -183020575 + AT_rich Low_complexity Low_complexity 1 23 0 1 693 267 31 0 0 chr1 14175315 14175347 -183020085 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 693 1296 62 0 0 chr1 14177376 14177587 -183017845 + (CA)n Simple_repeat Simple_repeat 1 211 0 1 693 5278 75 12 2 chr1 14178272 14178977 -183016455 + L1_Mus3 LINE L1 5719 6403 -235 1 693 867 270 24 0 chr1 14180073 14180284 -183015148 - B3 SINE B2 0 216 1 1 693 22 35 0 0 chr1 14181982 14182011 -183013421 + AT_rich Low_complexity Low_complexity 1 29 0 1 693 181 129 97 0 chr1 14185276 14185307 -183010125 - L2a LINE L2 -107 3319 3286 1 693 399 56 0 0 chr1 14185484 14185538 -183009894 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 693 315 197 0 32 chr1 14185546 14185609 -183009823 - BC1_Mm scRNA scRNA -77 75 15 2 693 207 88 0 0 chr1 14185634 14185668 -183009764 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 693 428 231 48 0 chr1 14185679 14185783 -183009649 - PB1D10 SINE Alu -4 113 5 2 693 708 200 6 11 chr1 14187088 14187240 -183008192 + GA-rich Low_complexity Low_complexity 2 153 0 2 693 1083 107 6 11 chr1 14187240 14187420 -183008012 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 693 708 171 38 7 chr1 14187420 14187498 -183007934 + polypurine Low_complexity Low_complexity 1 80 0 2 693 1212 72 0 22 chr1 14187498 14187682 -183007750 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 693 584 162 48 6 chr1 14187682 14187773 -183007659 + polypurine Low_complexity Low_complexity 87 179 0 2 693 471 35 0 0 chr1 14187779 14187836 -183007596 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 693 1154 279 88 14 chr1 14189165 14189518 -183005914 + MTEa LTR MaLR 1 379 0 2 693 185 318 81 52 chr1 14190733 14190869 -183004563 - MIR SINE MIR -21 241 102 2 693 264 296 70 0 chr1 14191504 14191575 -183003857 + ID4 SINE ID 2 77 -6 2 693 523 338 83 29 chr1 14191996 14192273 -183003159 + B4A SINE B4 1 292 0 2 693 318 306 157 65 chr1 14192408 14192989 -183002443 + L2 LINE L2 1920 2553 -866 2 693 217 283 126 39 chr1 14193211 14193314 -183002118 + L2 LINE L2 2800 2911 -508 2 693 22 35 0 0 chr1 14193695 14193724 -183001708 + AT_rich Low_complexity Low_complexity 1 29 0 2 693 954 118 27 14 chr1 14193980 14194126 -183001306 - B1_Mur4 SINE Alu -1 149 2 2 693 1764 209 88 18 chr1 14195021 14195405 -183000027 - MTD LTR MaLR -8 411 1 2 693 2696 54 3 0 chr1 14195836 14196167 -182999265 - Lx LINE L1 -684 5952 5621 2 693 3331 112 190 22 chr1 14196168 14196764 -182998668 + Lx LINE L1 5959 6654 0 2 693 5041 32 11 0 chr1 14200338 14200957 -182994475 + L1Md_F3 LINE L1 6009 6584 0 2 693 888 190 82 113 chr1 14201577 14201808 -182993624 - URR1A DNA MER1_type 0 226 3 2 693 210 200 40 0 chr1 14202274 14202324 -182993108 + CT-rich Low_complexity Low_complexity 2 53 0 2 693 21 0 0 0 chr1 14202677 14202698 -182992734 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 414 266 181 22 chr1 14205360 14205643 -182989789 + L1M4 LINE L1 3949 4272 -1868 2 693 341 43 21 0 chr1 14205652 14205699 -182989733 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2 693 655 70 132 0 chr1 14205704 14205833 -182989599 - RMER17B LTR ERVK -501 457 312 2 693 799 286 135 56 chr1 14205845 14206281 -182989151 + L1M4 LINE L1 4302 4746 -1400 2 693 2779 75 103 5 chr1 14206281 14206668 -182988764 + L1_Mus3 LINE L1 6211 6635 -3 2 693 799 286 135 56 chr1 14206668 14207088 -182988344 + L1M4 LINE L1 4747 5226 -920 2 693 3191 71 2 50 chr1 14207972 14208388 -182987044 + MTA_Mm LTR MaLR 1 396 0 2 693 28 48 0 0 chr1 14209649 14209691 -182985741 + AT_rich Low_complexity Low_complexity 1 42 0 2 693 23 0 0 0 chr1 14210945 14210968 -182984464 + AT_rich Low_complexity Low_complexity 1 23 0 2 693 685 207 34 14 chr1 14212191 14212338 -182983094 - B1_Mur4 SINE Alu 0 150 1 2 693 305 207 116 47 chr1 14212608 14212694 -182982738 + ID_B1 SINE B4 131 222 -2 2 693 306 322 46 50 chr1 14213031 14213197 -182982235 - MER58C DNA MER1_type -170 171 1 2 693 246 270 20 137 chr1 14214088 14214234 -182981198 + MT2B LTR ERVL 136 264 -337 2 693 580 235 53 0 chr1 14214122 14214139 -182981293 + B1F1 SINE Alu 1 139 -10 2 693 616 168 26 17 chr1 14214139 14214254 -182981178 + ID_B1 SINE B4 99 214 -10 2 693 1388 241 94 21 chr1 14214533 14215003 -182980429 + Lx2B LINE L1 6493 6996 -4 2 693 1767 66 0 5 chr1 14216608 14216822 -182978610 - L1_Mus1 LINE L1 -2 6565 6353 2 693 455 272 0 0 chr1 14217128 14217220 -182978212 + RSINE1 SINE B4 58 149 -16 2 693 342 0 0 0 chr1 14217220 14217258 -182978174 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 693 243 0 0 0 chr1 14217997 14218024 -182977408 + (A)n Simple_repeat Simple_repeat 1 27 0 2 693 963 128 0 32 chr1 14218113 14218298 -182977134 + CT-rich Low_complexity Low_complexity 2 180 0 2 693 185 94 0 30 chr1 14218804 14218837 -182976595 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 693 299 188 14 0 chr1 14220214 14220283 -182975149 + MER2 DNA MER2_type 144 213 -132 2 693 276 200 121 15 chr1 14220290 14220356 -182975076 + ID4_ SINE ID 1 73 -10 2 693 256 393 32 16 chr1 14220362 14220486 -182974946 + MER2 DNA MER2_type 219 344 -1 2 693 628 277 14 0 chr1 14221031 14221172 -182974260 - ID_B1 SINE B4 0 224 82 2 693 1074 102 0 0 chr1 14221754 14221901 -182973531 + B1_Mus1 SINE Alu 1 147 -1 2 693 310 262 39 31 chr1 14223228 14223358 -182972074 + L1MA4 LINE L1 5796 5926 -374 2 693 1272 109 65 16 chr1 14224809 14224995 -182970437 + B2_Mm2 SINE B2 1 195 0 2 693 3155 160 120 13 chr1 14225429 14226031 -182969401 + Lx4B LINE L1 6193 6858 -200 2 693 250 329 132 0 chr1 14226159 14226372 -182969060 + L2a LINE L2 2920 3160 -266 2 693 180 189 0 0 chr1 14227105 14227142 -182968290 + MIR SINE MIR 118 154 -108 2 693 388 84 23 35 chr1 14227715 14227801 -182967631 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 2 693 260 365 0 0 chr1 14227851 14227925 -182967507 - ID4 SINE ID -9 74 1 2 693 315 236 69 0 chr1 14228487 14228559 -182966873 - ID4 SINE ID -3 80 4 2 693 229 294 59 0 chr1 14228801 14228869 -182966563 + MTEb LTR MaLR 294 365 -14 2 693 261 247 49 148 chr1 14229160 14229369 -182966063 - ID_B1 SINE B4 -117 175 5 2 693 269 268 37 146 chr1 14229342 14229425 -182966007 - ID_B1 SINE B4 -161 131 89 2 693 249 229 0 20 chr1 14229425 14229474 -182965958 - PB1D10 SINE Alu -67 50 3 2 693 269 268 37 146 chr1 14229474 14229633 -182965799 - ID SINE ID -161 88 5 2 693 251 271 15 78 chr1 14229606 14229748 -182965684 - ID_B1 SINE B4 -161 131 5 2 693 440 311 101 0 chr1 14229738 14229857 -182965575 - B4A SINE B4 -161 131 1 2 693 571 209 148 0 chr1 14229957 14230072 -182965360 - RSINE1 SINE B4 -31 134 3 2 693 636 129 0 0 chr1 14230425 14230526 -182964906 + (TCC)n Simple_repeat Simple_repeat 3 103 0 2 693 222 207 48 79 chr1 14231939 14232002 -182963430 - MIRb SINE MIR -183 85 25 2 693 597 133 0 0 chr1 14235864 14235962 -182959470 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 693 645 128 0 0 chr1 14236122 14236224 -182959208 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 693 24 32 0 0 chr1 14236473 14236504 -182958928 + AT_rich Low_complexity Low_complexity 1 31 0 2 693 293 0 27 0 chr1 14237005 14237042 -182958390 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 693 440 35 17 0 chr1 14237040 14237098 -182958334 + (GAA)n Simple_repeat Simple_repeat 2 60 0 2 693 299 293 20 0 chr1 14237156 14237255 -182958177 + L1M5 LINE L1 3245 3345 -2801 2 693 279 250 188 0 chr1 14237273 14237353 -182958079 + PB1D10 SINE Alu 16 110 -7 2 693 1687 273 47 25 chr1 14237375 14237969 -182957463 + L1MC LINE L1 3347 3953 -2193 2 693 359 302 96 25 chr1 14238025 14238222 -182957210 + Lx8 LINE L1 7261 7471 -2 2 693 495 259 120 19 chr1 14238253 14238462 -182956970 + L1MC LINE L1 4020 4249 -1897 2 693 313 264 167 8 chr1 14238632 14238758 -182956674 + L1MC LINE L1 4439 4584 -1562 2 693 759 212 0 0 chr1 14238785 14238917 -182956515 + URR1B DNA MER1_type 1 132 -93 2 693 455 151 0 27 chr1 14239043 14239118 -182956314 + URR1B DNA MER1_type 153 225 0 2 693 859 306 136 32 chr1 14239128 14239811 -182955621 + L1MC LINE L1 4614 5367 -779 2 693 564 288 84 65 chr1 14239852 14240160 -182955272 + L1MC LINE L1 5376 5689 -644 2 693 853 330 91 28 chr1 14240164 14240628 -182954804 + Lx8 LINE L1 6888 7380 -93 2 693 23 0 0 0 chr1 14240718 14240741 -182954691 + AT_rich Low_complexity Low_complexity 1 23 0 2 693 379 206 27 0 chr1 14243320 14243393 -182952039 + B3A SINE B2 6 80 -118 2 693 315 0 0 0 chr1 14243454 14243489 -182951943 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 693 557 298 31 12 chr1 14244561 14244721 -182950711 + RSINE1 SINE B4 3 165 0 2 693 690 295 75 42 chr1 14245021 14245286 -182950146 - B4 SINE B4 -17 275 2 2 693 26 30 0 0 chr1 14245964 14245997 -182949435 + AT_rich Low_complexity Low_complexity 1 33 0 2 693 4876 76 3 7 chr1 14245999 14246605 -182948827 - L1Md_F2 LINE L1 0 6582 5979 2 693 323 178 192 0 chr1 14246639 14246712 -182948720 - B1_Mur1 SINE Alu -35 114 28 2 693 185 100 0 91 chr1 14246823 14246878 -182948554 + A-rich Low_complexity Low_complexity 1 50 0 2 693 274 335 37 102 chr1 14247622 14247974 -182947458 + L2 LINE L2 2742 3070 -349 2 693 567 302 8 0 chr1 14248437 14248563 -182946869 - RSINE1 SINE B4 -35 130 4 2 693 350 271 80 67 chr1 14249387 14249537 -182945895 - RSINE1 SINE B4 -10 155 4 2 693 263 297 141 21 chr1 14251147 14251181 -182944251 - L1MD LINE L1 -1086 5060 5012 2 693 1232 55 7 7 chr1 14251181 14251329 -182944103 - B1_Mus1 SINE Alu 0 148 1 2 693 698 264 82 76 chr1 14251329 14251657 -182943775 - L1M2 LINE L1 -1136 5007 4678 2 693 200 208 0 0 chr1 14252328 14252376 -182943056 + A-rich Low_complexity Low_complexity 1 48 0 2 693 246 290 0 0 chr1 14253382 14253444 -182941988 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 693 318 333 9 53 chr1 14255722 14255836 -182939596 - PB1D10 SINE Alu -8 109 1 2 693 25 31 0 0 chr1 14256887 14256919 -182938513 + AT_rich Low_complexity Low_complexity 1 32 0 2 693 568 289 0 53 chr1 14257818 14258008 -182937424 + B3A SINE B2 1 180 -18 2 693 499 294 28 35 chr1 14258069 14258210 -182937222 + ID_B1 SINE B4 82 221 -3 2 693 410 254 103 48 chr1 14258333 14258478 -182936954 + B4A SINE B4 3 155 -137 2 693 695 241 176 0 chr1 14258804 14258974 -182936458 + B3 SINE B2 2 201 -15 2 693 664 59 20 0 chr1 14259421 14259522 -182935910 - L1_Mus3 LINE L1 -1 6637 6535 2 693 815 200 222 0 chr1 14261419 14261604 -182933828 - URR1A DNA MER1_type 0 226 1 2 693 21 36 0 0 chr1 14263406 14263434 -182931998 + AT_rich Low_complexity Low_complexity 1 28 0 3 693 925 235 24 19 chr1 14264846 14265054 -182930378 + B3 SINE B2 2 210 -6 3 693 203 333 43 43 chr1 14266180 14266274 -182929158 - L2b LINE L2 -19 3356 3263 3 693 3575 38 2 0 chr1 14266645 14267040 -182928392 - MTA_Mm LTR MaLR 0 396 1 3 693 8955 52 17 4 chr1 14267040 14268124 -182927308 - MTA_Mm-int LTR MaLR 0 1098 1 3 693 3429 46 8 0 chr1 14268124 14268517 -182926915 - MTA_Mm LTR MaLR 0 396 1 3 693 207 69 0 0 chr1 14268566 14268595 -182926837 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 693 209 365 0 0 chr1 14268769 14268832 -182926600 + MIRb SINE MIR 166 228 -40 3 693 1138 270 24 44 chr1 14268921 14269219 -182926213 - B4 SINE B4 0 292 1 3 693 389 293 90 33 chr1 14269950 14269969 -182925463 + CYRA11_Mm Unknown Y-chromosome 153 292 -325 3 693 1075 148 33 5 chr1 14269969 14270153 -182925279 - URR1A DNA MER1_type 0 226 38 3 693 1513 89 16 0 chr1 14270699 14270889 -182924543 + B2_Mm2 SINE B2 2 194 -1 3 693 252 59 0 0 chr1 14270941 14270975 -182924457 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 693 819 160 8 0 chr1 14270977 14271108 -182924324 - B1_Mus2 SINE Alu -6 141 10 3 693 369 0 0 0 chr1 14271392 14271433 -182923999 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 693 937 165 17 23 chr1 14273506 14273680 -182921752 - URR1A DNA MER1_type -1 225 53 3 693 393 22 0 0 chr1 14273956 14274002 -182921430 + (CTA)n Simple_repeat Simple_repeat 3 48 0 3 693 270 0 0 0 chr1 14274003 14274033 -182921399 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 693 209 279 0 0 chr1 14274122 14274165 -182921267 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 693 1861 172 60 8 chr1 14274558 14274771 -182920661 + RLTR31A_Mm LTR ERVK 1 213 -371 3 693 219 69 0 0 chr1 14274771 14274800 -182920632 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 693 1861 193 91 15 chr1 14274800 14275038 -182920394 + RLTR31A_Mm LTR ERVK 214 506 -55 3 693 360 200 112 141 chr1 14275089 14275238 -182920194 + RLTR31A_Mm LTR ERVK 403 583 -1 3 693 543 288 63 21 chr1 14276194 14276336 -182919096 + B4A SINE B4 1 148 -144 3 693 297 136 0 0 chr1 14276332 14276376 -182919056 - B1_Mus1 SINE Alu -104 44 1 3 693 211 311 0 0 chr1 14277368 14277413 -182918019 - ID4_ SINE ID -38 45 1 3 693 200 237 0 0 chr1 14278676 14278714 -182916718 - L4 LINE RTE -391 1638 1601 3 693 246 185 154 0 chr1 14279919 14279984 -182915448 + MTEb LTR MaLR 302 376 -3 3 693 310 269 96 15 chr1 14282653 14282789 -182912643 - Charlie23a DNA MER1_type 0 339 193 3 693 182 242 58 43 chr1 14283013 14283082 -182912350 + L2b LINE L2 3242 3311 -64 3 693 224 219 0 0 chr1 14283287 14283328 -182912104 + GA-rich Low_complexity Low_complexity 5 45 0 3 693 319 351 22 60 chr1 14283697 14283882 -182911550 - MIRb SINE MIR -8 260 83 3 693 218 241 149 46 chr1 14285590 14285677 -182909755 - L2c LINE L2 -3 3384 3289 3 694 180 0 0 0 chr1 14288290 14288310 -182907122 + (A)n Simple_repeat Simple_repeat 1 20 0 3 694 180 248 70 86 chr1 14288821 14288949 -182906483 + L2 LINE L2 2432 2557 -862 3 694 328 174 41 0 chr1 14289527 14289648 -182905784 + (TG)n Simple_repeat Simple_repeat 2 127 0 3 694 437 260 10 0 chr1 14289749 14289853 -182905579 - B3 SINE B2 -111 105 1 3 694 307 233 115 79 chr1 14290440 14290453 -182904979 - B1F SINE Alu -3 147 92 3 694 381 250 65 28 chr1 14290453 14290560 -182904872 - ID_B1 SINE B4 -10 214 104 3 694 307 233 115 79 chr1 14290560 14290577 -182904855 - B1F SINE Alu -3 91 4 3 694 601 203 79 14 chr1 14290635 14290775 -182904657 + B1_Mur2 SINE Alu 1 149 0 3 694 186 43 0 0 chr1 14290783 14290806 -182904626 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 3 694 21 0 0 0 chr1 14291265 14291286 -182904146 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 23 0 0 0 chr1 14292237 14292260 -182903172 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 198 0 0 0 chr1 14294354 14294376 -182901056 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 694 405 0 0 0 chr1 14295238 14295283 -182900149 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 694 183 129 0 0 chr1 14295283 14295313 -182900119 + (CG)n Simple_repeat Simple_repeat 2 32 0 3 694 28 0 0 0 chr1 14296301 14296329 -182899103 + AT_rich Low_complexity Low_complexity 1 28 0 3 694 22 0 0 0 chr1 14303722 14303744 -182891688 + AT_rich Low_complexity Low_complexity 1 22 0 3 694 192 268 0 0 chr1 14304248 14304289 -182891143 - MIRb SINE MIR -12 256 216 3 694 195 188 0 0 chr1 14304258 14304290 -182891142 - MIRm SINE MIR -24 252 221 3 694 297 100 0 0 chr1 14304765 14304815 -182890617 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 694 285 75 0 0 chr1 14304976 14305016 -182890416 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 3 694 189 0 0 0 chr1 14305983 14306004 -182889428 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 694 245 292 0 33 chr1 14306209 14306301 -182889131 + G-rich Low_complexity Low_complexity 2 90 0 3 694 306 212 13 44 chr1 14306304 14306462 -182888970 + GA-rich Low_complexity Low_complexity 3 155 0 3 694 327 49 0 0 chr1 14306856 14306897 -182888535 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 694 615 264 87 13 chr1 14307770 14307965 -182887467 + B3A SINE B2 7 214 -2 3 694 260 256 33 22 chr1 14308640 14308742 -182886690 + BC1_Mm scRNA scRNA 4 104 -48 3 694 1681 252 62 25 chr1 14308961 14309449 -182885983 + RLTR12B LTR ERVK 6 511 -17 3 694 305 281 78 57 chr1 14309537 14309820 -182885612 + HAL1 LINE L1 1317 1605 -902 3 694 819 261 77 18 chr1 14310000 14310471 -182884961 + L1MA9 LINE L1 4926 5440 -872 3 694 822 290 69 18 chr1 14310478 14310696 -182884736 + B4A SINE B4 8 236 -56 3 694 450 0 0 0 chr1 14310703 14310753 -182884679 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 694 390 312 17 23 chr1 14310753 14310930 -182884502 + L1MA9 LINE L1 5438 5613 -699 3 694 511 277 174 0 chr1 14311006 14311161 -182884271 - B3 SINE B2 -6 210 29 3 694 376 313 162 18 chr1 14311327 14311766 -182883666 + L1MA9 LINE L1 5776 6277 -35 3 694 342 0 0 0 chr1 14311912 14311950 -182883482 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 694 4722 92 82 0 chr1 14312092 14312852 -182882580 + L1_Mm LINE L1 3466 4287 -1596 3 694 744 204 0 0 chr1 14313017 14313149 -182882283 + B1_Mur2 SINE Alu 1 132 -17 3 694 531 213 53 60 chr1 14313383 14313533 -182881899 + B1_Mur1 SINE Alu 1 149 0 3 694 251 71 24 0 chr1 14314855 14314897 -182880535 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 3 694 850 199 231 9 chr1 14315094 14315384 -182880048 - ORR1D1 LTR MaLR -9 412 3 3 694 299 299 218 56 chr1 14316049 14316191 -182879241 + RSINE1 SINE B4 1 165 0 3 694 1274 116 11 5 chr1 14317781 14317972 -182877460 + B2_Mm2 SINE B2 1 192 -3 3 694 755 112 0 8 chr1 14317982 14318108 -182877324 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 3 694 1177 55 7 0 chr1 14318185 14318331 -182877101 - B1_Mus1 SINE Alu 0 148 2 3 694 255 119 48 0 chr1 14318985 14319027 -182876405 - RMER30 DNA MER1_type -151 51 8 3 694 641 50 71 0 chr1 14320154 14320294 -182875138 + (TA)n Simple_repeat Simple_repeat 1 150 0 3 694 290 45 23 0 chr1 14320705 14320749 -182874683 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3 694 953 169 191 0 chr1 14320858 14321047 -182874385 - URR1A DNA MER1_type -1 225 1 3 694 804 205 92 5 chr1 14321213 14321409 -182874023 + B3 SINE B2 4 216 0 3 694 767 302 75 63 chr1 14321470 14321869 -182873563 + MTE2a LTR MaLR 6 405 -14 3 694 538 325 13 0 chr1 14322296 14322453 -182872979 + RSINE1 SINE B4 1 159 -6 3 694 783 255 24 99 chr1 14322596 14322809 -182872623 + ID_B1 SINE B4 2 198 -26 3 694 496 176 299 12 chr1 14323031 14323198 -182872234 + B3 SINE B2 2 216 0 3 694 459 0 0 0 chr1 14323702 14323753 -182871679 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3 694 317 315 124 51 chr1 14324634 14324868 -182870564 - L1MEf LINE L1 -5148 1052 802 3 694 378 310 101 5 chr1 14324874 14325072 -182870360 - L1MEf LINE L1 -5507 693 477 3 694 8144 76 35 7 chr1 14325837 14326920 -182868512 + RLTR13D3 LTR ERVK 1 1114 0 3 694 741 79 0 0 chr1 14327045 14327146 -182868286 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 694 374 328 87 34 chr1 14327213 14327421 -182868011 - B4 SINE B4 -63 229 11 3 694 300 250 127 17 chr1 14327919 14328037 -182867395 + MIR SINE MIR 40 170 -92 3 694 188 0 74 0 chr1 14328725 14328752 -182866680 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 694 27 49 0 0 chr1 14328822 14328863 -182866569 + AT_rich Low_complexity Low_complexity 1 41 0 3 694 271 273 61 0 chr1 14328977 14329043 -182866389 + ID_B1 SINE B4 93 162 -62 3 694 236 320 102 10 chr1 14329043 14329075 -182866357 + PB1D7 SINE Alu 12 118 -2 3 694 490 198 31 10 chr1 14329118 14329215 -182866217 - B1_Mur2 SINE Alu -1 148 50 3 694 507 385 76 23 chr1 14329281 14329674 -182865758 + L1M5 LINE L1 4740 5153 -993 3 694 237 290 0 9 chr1 14329779 14329887 -182865545 + L1M5 LINE L1 5283 5389 -784 3 694 501 17 0 0 chr1 14329917 14329975 -182865457 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 694 260 293 0 33 chr1 14330860 14330920 -182864512 + RSINE1 SINE B4 108 165 0 3 694 260 203 14 0 chr1 14331148 14331217 -182864215 + Lx9 LINE L1 7561 7630 -14 3 694 459 326 77 16 chr1 14331285 14331531 -182863901 + MER112 DNA MER1_type 1 261 0 3 694 625 232 0 0 chr1 14331538 14331680 -182863752 + B1F SINE Alu 7 148 -1 3 694 272 194 167 0 chr1 14332763 14332835 -182862597 + L1MA10 LINE L1 6240 6323 -11 3 694 236 256 39 0 chr1 14333154 14333232 -182862200 + L1MC5 LINE L1 7704 7784 -177 3 694 682 342 36 59 chr1 14333456 14333844 -182861588 - MTEa LTR MaLR 0 379 1 3 694 264 314 47 47 chr1 14334069 14334196 -182861236 + B1F1 SINE Alu 21 147 -2 3 694 244 245 19 19 chr1 14334201 14334255 -182861177 + ID4_ SINE ID 2 55 -28 4 694 556 252 15 0 chr1 14334642 14334773 -182860659 - Charlie24 DNA MER1_type -5 2445 2313 4 694 315 328 61 45 chr1 14334975 14335050 -182860382 - Charlie24 DNA MER1_type -438 2012 1936 4 694 370 333 128 22 chr1 14335050 14335458 -182859974 - LTR16A LTR ERVL 0 451 1 4 694 315 328 61 45 chr1 14335458 14335580 -182859852 - Charlie24 DNA MER1_type -515 1935 1812 4 694 457 297 102 60 chr1 14336579 14336844 -182858588 - Charlie24 DNA MER1_type -1956 494 219 4 694 381 293 25 33 chr1 14336848 14336968 -182858464 - ID_B1 SINE B4 -94 130 12 4 694 258 245 50 69 chr1 14337103 14337204 -182858228 - L2a LINE L2 -1 3425 3327 4 694 554 207 90 106 chr1 14337779 14337968 -182857464 - B3 SINE B2 -9 186 1 4 694 23 0 0 0 chr1 14337971 14337994 -182857438 + AT_rich Low_complexity Low_complexity 1 23 0 4 694 254 362 51 32 chr1 14340866 14341023 -182854409 - MIRc SINE MIR -98 170 11 4 694 21 57 0 0 chr1 14342764 14342799 -182852633 + AT_rich Low_complexity Low_complexity 1 35 0 4 694 834 109 0 0 chr1 14342896 14343033 -182852399 + (GA)n Simple_repeat Simple_repeat 1 137 0 4 694 321 290 193 53 chr1 14343039 14343283 -182852149 - B4 SINE B4 -12 280 3 4 694 6157 62 4 0 chr1 14343459 14344240 -182851192 - L1_Mus2 LINE L1 0 6566 5783 4 694 4011 70 16 20 chr1 14344260 14344812 -182850620 - L1Md_F2 LINE L1 -1 6581 6032 4 694 914 171 7 7 chr1 14344854 14345001 -182850431 + B1_Mur4 SINE Alu 4 150 0 4 694 270 0 0 0 chr1 14345079 14345109 -182850323 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 694 1128 214 18 0 chr1 14345678 14345898 -182849534 + URR1B DNA MER1_type 2 225 0 4 694 402 21 0 0 chr1 14346908 14346955 -182848477 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 694 564 15 0 0 chr1 14348441 14348506 -182846926 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 4 694 216 0 0 0 chr1 14348506 14348530 -182846902 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 694 762 131 0 0 chr1 14348530 14348652 -182846780 + (TCC)n Simple_repeat Simple_repeat 3 124 0 4 694 241 143 0 0 chr1 14349068 14349103 -182846329 + L2b LINE L2 3325 3359 -16 4 694 876 247 43 0 chr1 14349669 14349855 -182845577 - B3A SINE B2 -2 196 3 4 694 286 307 12 118 chr1 14349876 14350046 -182845386 - MIRb SINE MIR -40 228 77 4 694 444 37 0 0 chr1 14350067 14350121 -182845311 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 694 1216 77 0 9 chr1 14351082 14351304 -182844128 + (GAAA)n Simple_repeat Simple_repeat 1 220 0 4 694 1130 117 6 0 chr1 14351321 14351500 -182843932 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 694 491 356 146 18 chr1 14352401 14352736 -182842696 - MLT1B LTR MaLR -8 382 5 4 694 3551 147 22 70 chr1 14353066 14353740 -182841692 + RLTR26 LTR ERVK 1 642 0 4 694 221 360 166 35 chr1 14354202 14354461 -182840971 - L2 LINE L2 -337 3082 2790 4 694 283 214 68 0 chr1 14355022 14355125 -182840307 + (CA)n Simple_repeat Simple_repeat 2 111 0 4 694 11668 24 1 0 chr1 14355265 14357362 -182838070 - L1Md_A LINE L1 0 6582 4485 4 694 436 289 99 37 chr1 14358396 14358669 -182836763 - B4A SINE B4 0 292 3 4 694 483 256 101 48 chr1 14358811 14359020 -182836412 - ID_B1 SINE B4 -3 221 2 4 694 584 176 8 0 chr1 14359932 14360063 -182835369 + (CA)n Simple_repeat Simple_repeat 1 132 0 4 694 21 0 0 0 chr1 14361882 14361903 -182833529 + AT_rich Low_complexity Low_complexity 1 21 0 4 694 368 200 11 0 chr1 14361920 14362010 -182833422 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 694 4703 109 45 14 chr1 14362120 14362232 -182833200 - Lx2 LINE L1 0 6997 6868 4 694 204 40 0 0 chr1 14362232 14362257 -182833175 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 694 4703 109 45 14 chr1 14362257 14362878 -182832554 - Lx2 LINE L1 -130 6867 6242 4 694 298 315 25 92 chr1 14364951 14365070 -182830362 - B4 SINE B4 -141 151 41 4 694 29981 96 39 14 chr1 14365232 14369457 -182825975 + Lx3A LINE L1 220 4580 -1306 4 694 3487 167 59 18 chr1 14369457 14370122 -182825310 - RLTR17 LTR ERVK 0 692 1 4 694 29981 90 39 9 chr1 14370122 14372483 -182822949 + Lx3A LINE L1 4581 6981 0 4 694 210 171 0 0 chr1 14372649 14372684 -182822748 + (CAT)n Simple_repeat Simple_repeat 2 36 0 4 694 269 257 14 0 chr1 14372695 14372765 -182822667 - BC1_Mm scRNA scRNA -80 72 2 4 694 656 260 85 85 chr1 14373054 14373336 -182822096 - B4A SINE B4 -6 286 5 4 694 323 270 90 24 chr1 14374047 14374214 -182821218 - L1M2 LINE L1 -467 5833 5656 4 694 910 257 92 11 chr1 14374386 14374646 -182820786 + B4A SINE B4 1 281 -11 4 694 509 299 28 11 chr1 14375212 14375388 -182820044 + B3A SINE B2 2 180 -18 4 694 2221 152 82 59 chr1 14375438 14375935 -182819497 + RLTR31A_Mm LTR ERVK 1 557 0 4 694 771 174 14 28 chr1 14376414 14376556 -182818876 - B1_Mur4 SINE Alu -2 148 9 4 694 25949 74 3 3 chr1 14377372 14381059 -182814373 + L1Md_F2 LINE L1 1896 5585 -298 4 694 7472 73 0 20 chr1 14381060 14382079 -182813353 + L1Md_F2 LINE L1 5587 6582 0 4 694 949 248 15 0 chr1 14382847 14383053 -182812379 - B3 SINE B2 -5 211 3 4 694 1308 95 16 0 chr1 14383280 14383469 -182811963 - B2_Mm1t SINE B2 0 193 2 4 694 24 91 0 0 chr1 14383679 14383745 -182811687 + AT_rich Low_complexity Low_complexity 1 66 0 4 694 462 49 0 0 chr1 14384390 14384451 -182810981 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 694 6315 58 2 0 chr1 14385501 14386289 -182809143 + L1Md_T LINE L1 5793 6582 0 4 694 182 182 0 35 chr1 14386835 14386892 -182808540 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 4 694 27 29 0 0 chr1 14386908 14386942 -182808490 + AT_rich Low_complexity Low_complexity 1 34 0 4 694 401 35 35 0 chr1 14387083 14387141 -182808291 + (TCTCTG)n Simple_repeat Simple_repeat 6 65 0 4 694 321 89 0 0 chr1 14387141 14387175 -182808257 - HAL1-3A_ME LINE L1 -846 2012 1979 4 694 349 266 26 0 chr1 14387203 14387316 -182808116 + Lx6 LINE L1 88 203 -7525 4 694 4271 171 66 35 chr1 14387284 14388243 -182807189 + Lx6 LINE L1 466 1489 -4391 4 694 1831 166 0 13 chr1 14388243 14388555 -182806877 + RLTR10E LTR ERVK 1 308 -3 4 694 18777 160 54 71 chr1 14388555 14390249 -182805183 + Lx6 LINE L1 1490 3139 -2741 4 694 573 64 0 0 chr1 14390249 14390327 -182805105 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 694 18777 160 54 71 chr1 14390327 14390550 -182804882 + Lx6 LINE L1 3140 3362 -2518 4 694 1283 69 6 0 chr1 14390550 14390725 -182804707 + (TTTTC)n Simple_repeat Simple_repeat 5 180 0 4 694 18777 160 54 71 chr1 14390725 14390768 -182804664 + Lx6 LINE L1 3363 3403 -2477 4 694 719 79 0 0 chr1 14390768 14390869 -182804563 - B1_Mus2 SINE Alu 0 147 47 4 694 18777 160 54 71 chr1 14390869 14392190 -182803242 + Lx6 LINE L1 3404 4670 -1210 4 694 465 19 0 0 chr1 14392190 14392244 -182803188 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 694 18777 168 66 66 chr1 14392244 14393498 -182801934 + Lx6 LINE L1 4671 6047 -1413 4 694 551 253 53 18 chr1 14393578 14393611 -182801821 + Lx7 LINE L1 7516 7548 -148 4 694 387 0 0 0 chr1 14393611 14393654 -182801778 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 694 551 253 53 18 chr1 14393654 14393789 -182801643 + Lx7 LINE L1 7549 7690 -6 4 694 300 269 83 93 chr1 14395154 14395347 -182800085 - MIRb SINE MIR -3 265 75 4 694 912 209 57 35 chr1 14395503 14395731 -182799701 + RLTR12B LTR ERVK 296 528 0 4 694 512 77 13 0 chr1 14397167 14397245 -182798187 + (TCCC)n Simple_repeat Simple_repeat 2 80 0 4 694 873 273 35 48 chr1 14397250 14397481 -182797951 - B4 SINE B4 -63 229 2 4 694 340 338 14 21 chr1 14398055 14398200 -182797232 + RSINE1 SINE B4 3 146 -19 4 694 234 0 0 0 chr1 14398209 14398235 -182797197 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 4 694 752 265 79 63 chr1 14398316 14398541 -182796891 + L1MB8 LINE L1 4358 4596 -1550 4 694 1243 220 106 34 chr1 14398541 14398890 -182796542 - ORR1D1 LTR MaLR 0 374 1 4 694 752 265 79 63 chr1 14398890 14399207 -182796225 + L1MB8 LINE L1 4597 4909 -1237 4 694 241 232 0 99 chr1 14399209 14399300 -182796132 + 4.5SRNA scRNA scRNA 5 86 -8 4 694 627 151 105 40 chr1 14399226 14399350 -182796082 + B1_Mur1 SINE Alu 7 138 -11 4 694 1069 72 0 7 chr1 14399350 14399490 -182795942 + B1_Mus1 SINE Alu 1 139 -9 4 694 4677 44 0 2 chr1 14399765 14400331 -182795101 - L1_Mus1 LINE L1 -1 6566 6002 4 694 673 290 91 55 chr1 14400332 14401087 -182794345 + L1MB8 LINE L1 5079 5877 -301 4 694 248 294 11 0 chr1 14401313 14401405 -182794027 + L1MB8 LINE L1 6028 6120 -64 4 694 2881 67 30 15 chr1 14401851 14402245 -182793187 - MTB LTR MaLR 0 400 1 4 694 251 262 0 16 chr1 14402512 14402574 -182792858 - L2c LINE L2 0 3387 3327 4 694 369 0 0 0 chr1 14403098 14403139 -182792293 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 694 789 174 14 7 chr1 14403255 14403394 -182792038 - B1_Mur1 SINE Alu 0 149 10 4 694 325 218 62 145 chr1 14403276 14403421 -182792011 - MT2B LTR ERVL -326 275 143 4 694 409 352 55 12 chr1 14404569 14404733 -182790699 + B3A SINE B2 2 172 -26 4 694 495 33 0 0 chr1 14404748 14404809 -182790623 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 694 518 259 0 9 chr1 14405226 14405335 -182790097 + ID_B1 SINE B4 110 217 -7 4 694 489 34 0 0 chr1 14405361 14405420 -182790012 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 694 241 345 44 34 chr1 14405520 14406090 -182789342 + L1M5 LINE L1 5160 5737 -436 4 694 181 268 17 35 chr1 14406212 14406270 -182789162 + L2a LINE L2 2734 2790 -629 4 694 232 331 97 57 chr1 14406390 14406566 -182788866 + L2a LINE L2 3028 3210 -216 4 694 423 0 0 0 chr1 14406571 14406618 -182788814 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 694 2215 127 36 22 chr1 14407976 14408338 -182787094 + ORR1B2 LTR MaLR 1 367 0 4 694 273 340 104 0 chr1 14408655 14408761 -182786671 - PB1D9 SINE Alu -1 119 3 4 694 1087 115 0 0 chr1 14408780 14408928 -182786504 + B1_Mus1 SINE Alu 1 148 0 4 694 189 156 87 22 chr1 14410952 14410998 -182784434 - L2a LINE L2 -91 3335 3287 4 694 359 278 0 14 chr1 14411030 14411103 -182784329 + ID4 SINE ID 8 79 -4 4 694 2825 99 7 0 chr1 14411319 14411732 -182783700 + BGLII LTR ERVK 6 421 0 4 694 1563 212 123 6 chr1 14411866 14412208 -182783224 + MTD LTR MaLR 26 407 -12 4 694 244 205 64 0 chr1 14413711 14413789 -182781643 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 694 216 0 0 0 chr1 14414070 14414094 -182781338 + (T)n Simple_repeat Simple_repeat 1 24 0 4 694 3049 63 62 0 chr1 14415002 14415442 -182779990 - L1_Mus3 LINE L1 -562 6438 5625 4 694 4095 92 4 4 chr1 14415443 14415999 -182779433 + L1_Mus3 LINE L1 6080 6635 -3 5 694 284 353 59 13 chr1 14416067 14416219 -182779213 + MER117 DNA MER1_type 6 164 -33 5 694 356 269 0 0 chr1 14416595 14416673 -182778759 - B4A SINE B4 -213 79 2 5 695 350 73 23 47 chr1 14417990 14418076 -182777356 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 5 695 356 234 4 37 chr1 14418456 14418703 -182776729 + CT-rich Low_complexity Low_complexity 1 238 0 5 695 1369 253 161 25 chr1 14420377 14420699 -182774733 + L1MA8 LINE L1 5112 5492 -799 5 695 721 221 14 0 chr1 14420699 14420839 -182774593 + B1_Mus2 SINE Alu 5 146 -1 5 695 1369 256 99 45 chr1 14420839 14421447 -182773985 + L1MA8 LINE L1 5493 6127 -164 5 695 347 274 0 7 chr1 14422602 14422756 -182772676 + (CA)n Simple_repeat Simple_repeat 2 154 0 5 695 362 309 127 0 chr1 14423960 14424086 -182771346 - B1_Mur1 SINE Alu -7 142 1 5 695 864 219 228 169 chr1 14424751 14425190 -182770242 - MT2B LTR ERVL -62 539 1 5 695 703 294 60 0 chr1 14425876 14426094 -182769338 + Tigger5 DNA MER2_type 2 232 -2174 5 695 794 316 38 72 chr1 14426443 14426736 -182768696 + B4A SINE B4 4 286 -6 5 695 883 175 0 0 chr1 14427209 14427346 -182768086 + B1_Mur2 SINE Alu 13 149 0 5 695 1243 217 32 93 chr1 14427665 14428072 -182767360 - ORR1C2 LTR MaLR 0 384 3 5 695 480 35 0 0 chr1 14428853 14428911 -182766521 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 5 695 883 148 6 6 chr1 14429000 14429047 -182766385 + polypyrimidine Low_complexity Low_complexity 132 178 0 5 695 1308 79 0 0 chr1 14429047 14429225 -182766207 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 695 883 148 6 6 chr1 14429225 14429353 -182766079 + polypyrimidine Low_complexity Low_complexity 4 131 0 5 695 3937 127 55 16 chr1 14429374 14430016 -182765416 - Lx LINE L1 -6 6648 5982 5 695 811 192 90 45 chr1 14430277 14430500 -182764932 + RMER1C Other Other 1109 1341 -1 5 695 6171 66 30 5 chr1 14431259 14432204 -182763228 + L1Md_F LINE L1 396 1368 -4515 5 695 600 273 34 148 chr1 14432336 14432440 -182762992 + L1VL1 LINE L1 46 126 -6296 5 695 359 21 21 0 chr1 14432440 14432488 -182762944 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 695 600 273 34 148 chr1 14432488 14432735 -182762697 + L1VL1 LINE L1 127 356 -6066 5 695 340 273 15 15 chr1 14432811 14432945 -182762487 + L1VL4 LINE L1 670 803 -5813 5 695 22549 119 61 7 chr1 14432953 14436370 -182759062 + L1VL4 LINE L1 725 4228 -1655 5 695 1996 145 3 6 chr1 14436370 14436682 -182758750 + RLTR10E LTR ERVK 1 311 0 5 695 22549 113 70 7 chr1 14436682 14437588 -182757844 + L1VL4 LINE L1 4229 5301 -582 5 695 31611 72 2 15 chr1 14437583 14442738 -182752694 + L1Md_F2 LINE L1 505 5586 -297 5 695 8612 55 0 0 chr1 14442738 14443733 -182751699 + L1Md_F2 LINE L1 5587 6581 -1 5 695 494 195 0 0 chr1 14443733 14443745 -182751687 + L1_Mur2 LINE L1 5581 5592 -285 5 695 6346 77 1 8 chr1 14443802 14444934 -182750498 + L1_Mus2 LINE L1 5288 6411 -155 5 695 195 345 51 8 chr1 14445173 14445290 -182750142 - MIRb SINE MIR -68 200 79 5 695 303 323 138 45 chr1 14445501 14445770 -182749662 + L1MC4a LINE L1 5618 5911 -1971 5 695 891 330 30 30 chr1 14446214 14446576 -182748856 + MLT1A0 LTR MaLR 4 365 0 5 695 842 193 198 6 chr1 14448497 14448674 -182746758 - B3 SINE B2 -4 212 2 5 695 418 244 95 46 chr1 14450453 14450676 -182744756 - ORR1E LTR MaLR -3 376 124 5 695 440 326 27 7 chr1 14450948 14451096 -182744336 - ORR1E LTR MaLR -208 151 1 5 695 1151 291 58 11 chr1 14451516 14451878 -182743554 - MTE2b LTR MaLR 0 379 1 5 695 1485 156 4 9 chr1 14453583 14453809 -182741623 - URR1B DNA MER1_type 0 225 1 5 695 633 66 0 0 chr1 14454361 14454452 -182740980 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 695 26 0 0 0 chr1 14454790 14454816 -182740616 + AT_rich Low_complexity Low_complexity 1 26 0 5 695 24 0 0 0 chr1 14455730 14455754 -182739678 + AT_rich Low_complexity Low_complexity 1 24 0 5 695 697 217 60 49 chr1 14455880 14456064 -182739368 + B3 SINE B2 31 216 0 5 695 565 277 43 0 chr1 14456421 14456562 -182738870 + B1_Mur2 SINE Alu 3 149 0 5 695 3745 153 0 25 chr1 14457928 14458537 -182736895 - Lx LINE L1 0 6654 6061 5 695 4447 136 19 20 chr1 14458548 14459293 -182736139 + L1_Mm LINE L1 4956 5699 -184 5 695 1836 214 68 20 chr1 14459295 14459704 -182735728 + RLTR41 LTR ERV1 1 429 -17 5 695 1686 105 158 0 chr1 14459723 14460033 -182735399 + Lx2 LINE L1 5698 6055 -599 5 695 237 135 0 0 chr1 14460260 14460312 -182735120 + (T)n Simple_repeat Simple_repeat 1 52 0 5 695 1240 75 0 0 chr1 14460312 14460459 -182734973 - B1_Mm SINE Alu 0 147 1 5 695 230 304 14 0 chr1 14460564 14460633 -182734799 - Helitron2Na_Mam RC Helitron? -106 218 149 5 695 380 319 106 6 chr1 14460920 14461100 -182734332 + MER2 DNA MER2_type 8 205 -140 5 695 224 282 89 13 chr1 14461127 14461206 -182734226 - AluG_3 SINE Alu -90 221 137 5 695 247 200 40 0 chr1 14461331 14461381 -182734051 + MLT1F2 LTR MaLR 507 558 -2 5 695 201 222 117 146 chr1 14461439 14461577 -182733855 - MIRc SINE MIR -73 195 56 5 695 466 207 30 114 chr1 14461804 14461935 -182733497 + ID_B1 SINE B4 91 210 -14 5 695 253 281 61 82 chr1 14461935 14461947 -182733485 + B1_Mur4 SINE Alu 11 150 0 5 695 854 240 82 0 chr1 14462917 14463100 -182732332 + B3A SINE B2 1 198 0 5 695 231 184 0 0 chr1 14463169 14463207 -182732225 - MLT1F1 LTR MaLR -3 557 520 5 695 279 0 0 0 chr1 14463291 14463322 -182732110 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 695 389 274 248 5 chr1 14463450 14463652 -182731780 - MLT1F1 LTR MaLR -250 319 69 5 695 528 16 0 0 chr1 14463690 14463751 -182731681 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 695 837 91 91 0 chr1 14463752 14463873 -182731559 - B2_Mm2 SINE B2 -37 158 27 5 695 191 61 0 29 chr1 14463875 14463909 -182731523 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 695 1196 75 0 7 chr1 14463910 14464057 -182731375 - B1_Mus2 SINE Alu -1 146 1 5 695 283 128 0 0 chr1 14464057 14464096 -182731336 - B2_Mm2 SINE B2 -155 40 2 5 695 477 0 0 0 chr1 14464341 14464394 -182731038 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 695 307 302 52 10 chr1 14464984 14465081 -182730351 - B1F1 SINE Alu -48 101 1 5 695 221 228 150 12 chr1 14465366 14465446 -182729986 - L2b LINE L2 -12 3363 3273 5 695 213 292 0 44 chr1 14466045 14466113 -182729319 - MIRc SINE MIR -114 154 90 5 695 39148 40 0 3 chr1 14466293 14472556 -182722876 - L1Md_T LINE L1 0 6585 243 5 695 510 163 65 8 chr1 14473020 14473068 -182722364 - MT2A LTR ERVL 0 533 486 5 695 291 122 0 0 chr1 14473068 14473117 -182722315 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 695 510 163 65 8 chr1 14473117 14473192 -182722240 - MT2A LTR ERVL -48 485 403 5 695 315 0 0 0 chr1 14473283 14473318 -182722114 + (TAG)n Simple_repeat Simple_repeat 1 35 0 5 695 923 124 21 0 chr1 14473318 14473463 -182721969 - B2_Mm2 SINE B2 -47 148 1 5 695 24 32 0 0 chr1 14473905 14473936 -182721496 + AT_rich Low_complexity Low_complexity 1 31 0 5 695 875 237 18 36 chr1 14473936 14474155 -182721277 - B3 SINE B2 0 216 2 5 695 22 0 0 0 chr1 14474188 14474210 -182721222 + AT_rich Low_complexity Low_complexity 1 22 0 5 695 388 220 26 44 chr1 14474374 14474488 -182720944 + Lx8 LINE L1 7144 7255 -218 5 695 214 286 0 0 chr1 14478759 14478808 -182716624 + MIR3 SINE MIR 115 163 -45 5 695 542 242 147 43 chr1 14478835 14479171 -182716261 - MTD LTR MaLR -14 405 2 5 695 275 255 203 14 chr1 14480379 14480522 -182714910 + L2c LINE L2 3214 3383 -4 5 695 423 0 0 0 chr1 14481997 14482044 -182713388 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 695 748 284 83 14 chr1 14482081 14482299 -182713133 - B4 SINE B4 -59 233 1 5 695 208 139 0 0 chr1 14483363 14483399 -182712033 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 5 695 584 309 22 5 chr1 14483449 14483673 -182711759 - L1MA6 LINE L1 0 6300 6073 5 695 5686 38 0 0 chr1 14483823 14484457 -182710975 + L1Md_T LINE L1 5949 6582 0 5 695 483 267 26 8 chr1 14485123 14485240 -182710192 - PB1D7 SINE Alu -1 119 1 5 695 236 207 11 40 chr1 14486741 14486917 -182708515 + CT-rich Low_complexity Low_complexity 2 172 0 5 695 217 330 0 0 chr1 14486929 14487023 -182708409 + CT-rich Low_complexity Low_complexity 1 94 0 5 695 516 32 0 0 chr1 14487418 14487480 -182707952 + (TGG)n Simple_repeat Simple_repeat 1 62 0 5 695 182 337 75 21 chr1 14487508 14487602 -182707830 + MIRc SINE MIR 15 113 -155 5 695 459 0 0 0 chr1 14487879 14487930 -182707502 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 5 695 210 154 154 0 chr1 14489281 14489333 -182706099 + L2 LINE L2 193 252 -3167 5 695 28 29 0 0 chr1 14489919 14489954 -182705478 + AT_rich Low_complexity Low_complexity 1 35 0 5 695 22 0 0 0 chr1 14490550 14490572 -182704860 + AT_rich Low_complexity Low_complexity 1 22 0 5 695 989 241 19 9 chr1 14491174 14491388 -182704044 + B3 SINE B2 1 216 0 5 695 324 0 0 0 chr1 14492309 14492345 -182703087 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 695 207 0 0 0 chr1 14492369 14492392 -182703040 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 695 231 61 0 0 chr1 14492935 14492968 -182702464 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 695 243 88 0 0 chr1 14494401 14494435 -182700997 + (GGA)n Simple_repeat Simple_repeat 2 35 0 5 695 468 0 0 0 chr1 14494779 14494831 -182700601 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 695 195 100 0 0 chr1 14494839 14494869 -182700563 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 5 695 186 103 0 0 chr1 14494948 14494977 -182700455 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 5 695 306 0 0 0 chr1 14495807 14495841 -182699591 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 695 441 0 0 0 chr1 14495843 14495892 -182699540 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 695 180 0 0 0 chr1 14496902 14496922 -182698510 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 5 695 186 133 0 0 chr1 14498073 14498103 -182697329 + (CAT)n Simple_repeat Simple_repeat 3 32 0 6 695 183 42 0 0 chr1 14498278 14498302 -182697130 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 6 695 286 139 14 14 chr1 14498657 14498730 -182696702 + GA-rich Low_complexity Low_complexity 1 73 0 6 695 216 0 0 0 chr1 14499164 14499188 -182696244 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 695 21 0 0 0 chr1 14499657 14499678 -182695754 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 207 0 0 0 chr1 14499781 14499804 -182695628 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 695 306 87 0 0 chr1 14501678 14501724 -182693708 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 695 180 176 0 0 chr1 14504333 14504367 -182691065 + T-rich Low_complexity Low_complexity 2 35 0 2 695 4355 55 13 0 chr1 14504597 14505141 -182690291 + L1_Mus1 LINE L1 6012 6562 -5 3 695 675 285 0 0 chr1 14505309 14505467 -182689965 + RSINE1 SINE B4 2 159 -6 4 695 519 217 77 8 chr1 14506046 14506176 -182689256 - B1_Mur1 SINE Alu -9 140 2 5 695 281 347 76 0 chr1 14506513 14506657 -182688775 + MIRb SINE MIR 101 255 -13 6 695 370 312 10 31 chr1 14506801 14506897 -182688535 - PB1D10 SINE Alu -23 94 1 7 695 491 302 37 29 chr1 14508199 14508387 -182687045 + B3A SINE B2 5 192 -6 8 695 306 296 140 36 chr1 14509167 14509388 -182686044 - L2 LINE L2 -1256 2163 1920 9 695 20799 158 62 27 chr1 14509669 14515786 -182679646 + Lx LINE L1 356 6648 -6 1 695 26 0 0 0 chr1 14515801 14515827 -182679605 + AT_rich Low_complexity Low_complexity 1 26 0 1 695 720 210 88 0 chr1 14515858 14516048 -182679384 - MT2B LTR ERVL -48 553 242 1 695 545 277 8 0 chr1 14516056 14516186 -182679246 - B1_Mur2 SINE Alu -16 133 3 1 695 1585 291 52 2 chr1 14516262 14516707 -182678725 - RCHARR1 DNA MER1_type -507 467 1 1 695 730 315 49 9 chr1 14516861 14517085 -182678347 + B4A SINE B4 2 234 -58 1 695 379 295 141 22 chr1 14517421 14518037 -182677395 - L1MEc LINE L1 -3366 2953 2253 1 695 356 321 92 6 chr1 14518056 14518219 -182677213 - MER45A DNA Tip100 -1 177 1 1 695 455 335 100 38 chr1 14518483 14518902 -182676530 - L1MEc LINE L1 -4927 1473 1029 1 695 250 293 15 4 chr1 14518903 14518989 -182676443 - ID4 SINE ID -45 107 22 1 695 21 0 0 0 chr1 14519007 14519028 -182676404 + AT_rich Low_complexity Low_complexity 1 21 0 1 695 355 217 130 0 chr1 14519158 14519250 -182676182 - PB1D9 SINE Alu 0 120 17 2 695 966 297 35 35 chr1 14519436 14519568 -182675864 - MTE2a LTR MaLR -14 365 235 2 695 1297 182 0 0 chr1 14519568 14519793 -182675639 - URR1B DNA MER1_type 0 225 1 2 695 966 305 46 38 chr1 14519793 14520055 -182675377 - MTE2a LTR MaLR -156 263 2 2 695 4752 48 6 0 chr1 14520585 14521414 -182674018 - L1Md_F2 LINE L1 -491 6091 5258 2 695 3919 72 6 8 chr1 14521415 14521937 -182673495 + L1Md_F2 LINE L1 6061 6581 -1 2 695 1155 75 0 13 chr1 14521948 14522097 -182673335 + B1_Mm SINE Alu 1 147 0 2 695 22 35 0 0 chr1 14522125 14522154 -182673278 + AT_rich Low_complexity Low_complexity 1 29 0 2 695 322 292 0 0 chr1 14522789 14522854 -182672578 - ID4 SINE ID -13 70 6 2 695 2062 246 35 35 chr1 14523276 14523911 -182671521 + L1VL4 LINE L1 174 808 -5494 2 695 273 197 0 62 chr1 14523911 14523976 -182671456 + 4.5SRNA scRNA scRNA 26 86 -8 2 695 297 174 68 68 chr1 14523925 14523999 -182671433 + MT2B LTR ERVL 191 264 -337 2 695 795 25 0 2 chr1 14523935 14524035 -182671397 + B1_Mm SINE Alu 49 141 -6 3 695 282 116 0 0 chr1 14524036 14524079 -182671353 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 695 25659 134 12 6 chr1 14524086 14529423 -182666009 + L1_Mus3 LINE L1 1175 6540 -98 3 695 459 0 0 0 chr1 14529423 14529474 -182665958 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 695 6902 93 28 0 chr1 14529474 14529559 -182665873 + L1_Mus3 LINE L1 6541 6637 -1 3 695 468 322 25 0 chr1 14529581 14529702 -182665730 - MER3 DNA MER1_type -85 124 1 3 695 443 287 33 47 chr1 14529746 14529896 -182665536 + B1F SINE Alu 1 148 -1 3 695 344 278 0 0 chr1 14529906 14530039 -182665393 + A-rich Low_complexity Low_complexity 1 133 0 3 695 229 279 206 32 chr1 14530280 14530406 -182665026 + RMER21A LTR ERV1 537 684 -263 3 695 744 241 87 15 chr1 14530584 14530790 -182664642 + RodERV21-int LTR ERV1 171 391 -4600 3 695 397 231 105 59 chr1 14530813 14530965 -182664467 + RodERV21-int LTR ERV1 453 611 -4380 3 695 2527 252 89 19 chr1 14531041 14531818 -182663614 + RodERV21-int LTR ERV1 751 1581 -3410 3 695 472 172 23 202 chr1 14531869 14532087 -182663345 + RLTR19-int LTR ERVK 3819 3997 -2140 3 695 893 257 60 92 chr1 14532181 14532550 -182662882 + RLTR19-int LTR ERVK 4025 4381 -1756 3 695 1229 219 55 3 chr1 14532769 14533058 -182662374 + RodERV21-int LTR ERV1 4440 4743 -248 3 695 422 248 64 21 chr1 14533386 14533526 -182661906 + RLTR23 LTR ERV1 285 430 0 4 695 320 268 10 10 chr1 14533526 14533624 -182661808 + RodERV21-int LTR ERV1 4727 4824 -167 3 695 445 257 10 10 chr1 14533626 14533728 -182661704 + RMER4B LTR ERVK 345 446 -139 4 695 250 301 161 7 chr1 14533932 14534069 -182661363 + RMER21B LTR ERV1 410 567 -275 4 695 255 79 0 0 chr1 14534553 14534591 -182660841 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 4 695 1184 68 0 0 chr1 14534617 14534763 -182660669 - B1_Mm SINE Alu -1 146 1 4 695 200 346 0 0 chr1 14536844 14536922 -182658510 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 695 834 337 24 12 chr1 14536931 14537177 -182658255 - B4A SINE B4 -43 249 1 4 695 183 28 83 0 chr1 14537208 14537244 -182658188 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 695 11658 87 19 6 chr1 14537939 14540510 -182654922 + L1VL2 LINE L1 55 2661 -954 4 695 622 175 93 23 chr1 14542353 14542482 -182652950 - B1_Mur4 SINE Alu -11 139 2 4 695 259 286 47 145 chr1 14543390 14543562 -182651870 - ORR1D1 LTR MaLR -25 354 200 5 695 921 189 11 16 chr1 14543584 14543772 -182651660 + B2_Mm2 SINE B2 1 187 -8 5 695 333 118 0 0 chr1 14543825 14543876 -182651556 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 695 385 301 84 18 chr1 14543876 14544042 -182651390 - ORR1D1 LTR MaLR -193 181 5 5 695 391 256 22 117 chr1 14544248 14544385 -182651047 + MLT1A1 LTR MaLR 285 408 0 5 695 202 331 7 145 chr1 14545590 14545742 -182649690 - L2a LINE L2 -3 3423 3293 5 695 215 376 137 38 chr1 14546001 14546374 -182649058 - L2a LINE L2 -458 2961 2552 5 695 257 231 31 0 chr1 14547016 14547081 -182648351 - RMER30 DNA MER1_type -32 170 104 5 695 180 234 0 0 chr1 14547130 14547177 -182648255 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 695 255 258 0 226 chr1 14547187 14547302 -182648130 - RMER30 DNA MER1_type -112 90 2 5 695 243 430 13 7 chr1 14547583 14547735 -182647697 + Charlie15a DNA MER1_type 28 180 -44 5 696 308 346 89 0 chr1 14549273 14549374 -182646058 - PB1D10 SINE Alu -7 110 1 5 696 349 262 205 45 chr1 14550120 14550276 -182645156 + B3A SINE B2 8 188 -7 5 696 225 275 0 115 chr1 14550439 14550514 -182644918 + MTEa LTR MaLR 1 66 -313 6 696 453 288 63 38 chr1 14550514 14550607 -182644825 - RLTR20D LTR ERVK 0 578 481 6 696 309 26 0 0 chr1 14550607 14550645 -182644787 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 696 453 288 63 38 chr1 14550645 14550710 -182644722 - RLTR20D LTR ERVK -98 480 417 6 696 716 282 28 52 chr1 14550695 14550983 -182644449 - RLTR20D LTR ERVK -285 283 3 6 696 1299 322 106 19 chr1 14551172 14551710 -182643722 + MTE-int LTR MaLR 941 1525 -55 6 696 746 190 48 22 chr1 14552095 14552293 -182643139 + Lx7 LINE L1 7520 7676 -20 6 696 244 309 0 21 chr1 14552938 14553034 -182642398 + GA-rich Low_complexity Low_complexity 2 95 0 6 696 750 84 0 0 chr1 14554842 14554949 -182640483 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 696 279 231 0 0 chr1 14555107 14555159 -182640273 + B1F SINE Alu 91 142 -7 6 696 255 125 0 0 chr1 14556882 14556922 -182638510 + (T)n Simple_repeat Simple_repeat 1 40 0 6 696 248 292 21 10 chr1 14557735 14557832 -182637600 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 696 713 263 11 6 chr1 14557880 14558060 -182637372 + B3A SINE B2 2 182 -16 7 696 23 0 0 0 chr1 14558077 14558100 -182637332 + AT_rich Low_complexity Low_complexity 1 23 0 7 696 182 278 55 18 chr1 14558907 14558962 -182636470 + L2 LINE L2 1312 1368 -2051 7 696 30 69 0 0 chr1 14559422 14559480 -182635952 + AT_rich Low_complexity Low_complexity 1 58 0 7 696 241 140 17 17 chr1 14559604 14559662 -182635770 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 696 180 258 14 70 chr1 14562169 14562240 -182633192 - L2a LINE L2 -45 3381 3315 7 696 272 301 35 0 chr1 14562314 14562457 -182632975 + L1M4 LINE L1 5252 5399 -747 7 696 243 299 0 0 chr1 14562501 14562578 -182632854 + L1M4 LINE L1 5486 5562 -617 7 696 273 307 35 122 chr1 14562855 14562961 -182632471 + L1MB8 LINE L1 5878 5973 -205 7 696 1079 43 14 0 chr1 14562961 14563101 -182632331 + (GGGAA)n Simple_repeat Simple_repeat 5 146 0 7 696 273 307 35 122 chr1 14563101 14563313 -182632119 + L1MB8 LINE L1 5974 6168 -10 7 696 197 359 84 17 chr1 14563556 14563675 -182631757 + L2c LINE L2 3236 3362 -25 7 696 1028 236 48 30 chr1 14567747 14568018 -182627414 + B4A SINE B4 1 276 -16 8 696 478 246 31 31 chr1 14569987 14570117 -182625315 - B4 SINE B4 -21 271 142 8 696 195 42 0 0 chr1 14570364 14570388 -182625044 + (CATG)n Simple_repeat Simple_repeat 1 24 0 8 696 186 133 0 0 chr1 14570390 14570420 -182625012 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 8 696 1142 88 0 0 chr1 14570562 14570709 -182624723 - B1_Mus1 SINE Alu 0 148 2 8 696 3137 154 36 19 chr1 14570746 14571353 -182624079 + Lx4B LINE L1 6444 7015 -43 8 696 283 260 32 8 chr1 14572061 14572185 -182623247 - L1_Mur2 LINE L1 -4289 1588 1462 8 696 456 19 0 0 chr1 14574691 14574744 -182620688 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 696 329 270 8 119 chr1 14574744 14574870 -182620562 - RSINE1 SINE B4 -51 114 3 8 696 7344 81 13 3 chr1 14575721 14576849 -182618583 + L1_Mus1 LINE L1 4804 5942 -625 8 696 477 0 0 0 chr1 14576849 14576902 -182618530 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 696 7328 49 18 8 chr1 14576902 14577514 -182617918 + L1_Mus1 LINE L1 5943 6563 -4 8 696 21 0 0 0 chr1 14577514 14577535 -182617897 + AT_rich Low_complexity Low_complexity 1 21 0 9 696 333 371 57 7 chr1 14577557 14577698 -182617734 - RSINE1 SINE B4 -14 151 4 9 696 323 103 321 9 chr1 14578886 14578998 -182616434 - B2_Mm2 SINE B2 0 195 49 9 696 1298 90 11 0 chr1 14579031 14579208 -182616224 - B2_Mm1t SINE B2 -14 179 1 9 696 375 308 38 23 chr1 14579692 14579825 -182615607 + ID_B1 SINE B4 86 220 -4 9 696 229 200 18 18 chr1 14580402 14580458 -182614974 + MIR SINE MIR 103 158 -104 9 696 410 340 47 68 chr1 14580957 14581165 -182614267 - MLT1A LTR MaLR -136 254 36 9 696 22 0 0 0 chr1 14581769 14581791 -182613641 + AT_rich Low_complexity Low_complexity 1 22 0 9 696 196 250 70 70 chr1 14583143 14583229 -182612203 - L2a LINE L2 -3 3423 3338 9 696 192 77 0 0 chr1 14583280 14583306 -182612126 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1 696 863 233 33 0 chr1 14584371 14584551 -182610881 + MTE2b LTR MaLR 192 377 -2 1 696 6949 189 91 37 chr1 14584821 14587870 -182607562 - Lx6 LINE L1 -7 7453 4242 1 696 403 333 71 32 chr1 14587888 14588170 -182607262 - MTD LTR MaLR -72 347 12 1 696 1023 159 3 3 chr1 14588170 14588480 -182606952 + GA-rich Low_complexity Low_complexity 1 310 0 1 696 12641 89 21 4 chr1 14588480 14591078 -182604354 - L1VL4 LINE L1 -728 2831 187 1 696 9777 181 21 43 chr1 14591219 14591960 -182603472 - L1_Mur3 LINE L1 -1651 4229 3521 1 696 1278 97 17 0 chr1 14591960 14592135 -182603297 + B2_Mm2 SINE B2 1 178 -17 1 696 989 98 11 17 chr1 14592135 14592311 -182603121 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 1 696 9777 181 21 43 chr1 14592311 14593903 -182601529 - L1_Mur3 LINE L1 -2360 3520 1948 1 696 792 306 31 6 chr1 14593914 14594236 -182601196 - L1_Mur3 LINE L1 -7180 548 219 1 696 228 319 14 0 chr1 14594591 14594660 -182600772 + B4 SINE B4 149 218 -74 1 696 252 0 0 0 chr1 14594750 14594778 -182600654 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 696 12943 84 10 2 chr1 14594787 14597343 -182598089 - L1Md_F2 LINE L1 -3 6579 4001 1 696 3333 102 236 0 chr1 14597337 14597925 -182597507 - L1VL1 LINE L1 -5695 727 1 1 696 227 270 40 0 chr1 14597986 14598060 -182597372 - L1MC LINE L1 -2111 5771 5695 1 696 580 268 8 0 chr1 14598098 14598221 -182597211 - B1_Mur1 SINE Alu -9 140 17 1 696 1137 286 156 8 chr1 14598729 14599088 -182596344 - MTD LTR MaLR 0 419 8 1 696 292 176 108 0 chr1 14599129 14599203 -182596229 - Lx8 LINE L1 -2 7471 7390 1 696 673 254 36 57 chr1 14600808 14601000 -182594432 + B3 SINE B2 18 205 -11 1 696 683 255 124 25 chr1 14601006 14601207 -182594225 - MTE2b LTR MaLR -156 223 3 1 696 240 254 68 53 chr1 14601339 14601472 -182593960 - Arthur1B DNA Tip100 -47 1178 1044 1 696 2651 216 41 7 chr1 14602130 14602744 -182592688 + Lx7 LINE L1 6701 7335 -361 1 696 686 195 25 39 chr1 14602879 14603082 -182592350 + Lx7 LINE L1 7339 7538 -158 1 696 1184 68 0 0 chr1 14604466 14604612 -182590820 + B1_Mm SINE Alu 2 147 0 1 696 207 0 0 0 chr1 14604618 14604641 -182590791 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 696 284 0 28 0 chr1 14604670 14604706 -182590726 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 696 250 340 82 75 chr1 14604862 14605129 -182590303 + ORR1E LTR MaLR 91 359 0 1 696 273 349 26 60 chr1 14605892 14605974 -182589458 - MTE2b LTR MaLR -123 256 178 1 696 2407 99 28 6 chr1 14605974 14606330 -182589102 - Lx LINE L1 0 6654 6291 1 696 1742 171 188 26 chr1 14606330 14606714 -182588718 - RLTR41 LTR ERV1 0 446 1 1 696 273 349 26 60 chr1 14606714 14606746 -182588686 - MTE2b LTR MaLR -202 177 146 1 696 622 316 21 0 chr1 14606832 14607114 -182588318 - RLTR6-int LTR ERV1 -90 7688 7401 1 696 1335 289 39 11 chr1 14607759 14608224 -182587208 - MuRRS4-int LTR ERV1 -1050 4013 3536 1 696 545 0 0 15 chr1 14608312 14608378 -182587054 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 696 4558 37 0 2 chr1 14608461 14609214 -182586218 - L1Md_A LINE L1 -414 6168 5417 1 696 6356 134 20 4 chr1 14609205 14610466 -182584966 - Lx LINE L1 -633 6021 4737 1 696 198 0 0 0 chr1 14610466 14610488 -182584944 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 696 297 0 0 0 chr1 14610488 14610520 -182584912 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 696 793 310 78 39 chr1 14612465 14612541 -182582891 - RCHARR1 DNA MER1_type -628 346 282 1 696 3537 20 0 0 chr1 14612541 14612937 -182582495 - MTA_Mm LTR MaLR 0 396 1 1 696 793 310 78 39 chr1 14612937 14613192 -182582240 - RCHARR1 DNA MER1_type -693 281 2 1 696 325 272 32 11 chr1 14615034 14615127 -182580305 + PB1D10 SINE Alu 1 95 -22 1 696 336 190 89 0 chr1 14615160 14615239 -182580193 + Lx7 LINE L1 6957 7042 -654 1 696 2256 210 34 52 chr1 14615240 14615833 -182579599 - Lx7 LINE L1 -737 6959 6378 1 696 398 301 0 17 chr1 14615967 14616082 -182579350 - PB1D7 SINE Alu -1 119 7 1 696 512 254 136 34 chr1 14616115 14616262 -182579170 + RSINE1 SINE B4 2 163 -2 1 696 897 323 51 47 chr1 14617846 14618395 -182577037 - Lx8 LINE L1 0 7473 6923 1 696 594 0 0 0 chr1 14618402 14618468 -182576964 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 696 354 321 20 5 chr1 14618779 14618976 -182576456 + L1ME3A LINE L1 5797 5996 -177 1 696 217 344 82 20 chr1 14619069 14619167 -182576265 + MIRb SINE MIR 141 244 -24 1 696 186 416 40 7 chr1 14619324 14619474 -182575958 + L4 LINE RTE 1582 1736 -293 1 696 406 319 30 43 chr1 14619602 14619766 -182575666 - RSINE1 SINE B4 0 165 4 1 696 180 0 0 0 chr1 14620635 14620655 -182574777 + (T)n Simple_repeat Simple_repeat 1 20 0 1 696 2380 102 70 45 chr1 14621915 14622314 -182573118 - RLTR9E LTR ERVK 0 409 1 1 696 339 303 45 76 chr1 14622569 14622701 -182572731 - MLT1B LTR MaLR -6 368 241 1 696 393 267 77 122 chr1 14623022 14623269 -182572163 - MLT1B LTR MaLR -147 243 8 1 696 633 267 7 15 chr1 14623725 14623862 -182571570 - ID_B1 SINE B4 -1 223 88 1 696 315 271 110 26 chr1 14624202 14624357 -182571075 + L1ME4a LINE L1 5957 6124 0 1 696 238 315 21 32 chr1 14624979 14625074 -182570358 - L2c LINE L2 -49 3338 3245 1 696 228 254 73 0 chr1 14625271 14625326 -182570106 - tRNA-Ala-GCY_ tRNA tRNA -11 64 6 1 696 216 318 61 0 chr1 14625326 14625337 -182570095 - ID4_ SINE ID -13 70 1 1 696 216 175 48 0 chr1 14626759 14626822 -182568610 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1 696 350 330 28 0 chr1 14627355 14627461 -182567971 + ID_B1 SINE B4 110 218 -6 1 696 248 287 45 22 chr1 14628739 14628828 -182566604 - MLT1A0 LTR MaLR -9 356 266 1 696 489 270 6 8 chr1 14630500 14630617 -182564815 - PB1D10 SINE Alu -19 129 13 1 696 343 310 10 0 chr1 14631080 14631180 -182564252 + GA-rich Low_complexity Low_complexity 4 104 0 1 696 224 300 54 0 chr1 14631792 14631922 -182563510 + (CCCTG)n Simple_repeat Simple_repeat 4 140 0 1 696 430 306 67 84 chr1 14632138 14632363 -182563069 - MTEb LTR MaLR -21 358 138 1 696 208 139 0 0 chr1 14632808 14632844 -182562588 + (A)n Simple_repeat Simple_repeat 1 36 0 1 696 193 98 24 24 chr1 14633281 14633323 -182562109 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 1 696 183 80 0 0 chr1 14633699 14633724 -182561708 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1 696 1152 120 0 0 chr1 14633813 14634163 -182561269 + (CA)n Simple_repeat Simple_repeat 1 350 0 1 696 1965 213 21 21 chr1 14635071 14635292 -182560140 - BGLII_B LTR ERVK 0 441 216 1 696 1065 113 0 0 chr1 14635292 14635460 -182559972 + (TCTCC)n Simple_repeat Simple_repeat 2 169 0 1 696 1965 213 21 21 chr1 14635460 14635674 -182559758 - BGLII_B LTR ERVK -226 215 7 1 696 288 275 33 66 chr1 14636165 14636317 -182559115 - L1MC LINE L1 -2432 5450 5304 1 696 1246 94 0 0 chr1 14636468 14636638 -182558794 + B2_Mm2 SINE B2 2 171 -24 1 696 4419 75 2 0 chr1 14637741 14638354 -182557078 - L1Md_F2 LINE L1 -806 5077 4464 1 696 4164 24 0 0 chr1 14638352 14638861 -182556571 + L1Md_F2 LINE L1 5078 5586 -297 1 696 7638 60 14 15 chr1 14638861 14639846 -182555586 + L1Md_F2 LINE L1 5587 6570 -12 1 696 7189 87 4 13 chr1 14640490 14640546 -182554886 - L1_Mus3 LINE L1 0 6638 6591 1 696 2772 77 39 12 chr1 14640546 14640956 -182554476 + BGLII LTR ERVK 1 421 0 1 696 17057 133 170 7 chr1 14640956 14645019 -182550413 - L1_Mus3 LINE L1 -48 6590 1699 1 696 333 0 0 0 chr1 14645019 14645056 -182550376 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 696 288 0 0 0 chr1 14645056 14645087 -182550345 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 696 17057 166 105 8 chr1 14645087 14646177 -182549255 - L1_Mus3 LINE L1 -4185 1698 612 1 696 285 100 0 0 chr1 14646371 14646421 -182549011 + (CCTG)n Simple_repeat Simple_repeat 4 53 0 1 696 369 0 0 0 chr1 14647297 14647338 -182548094 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1 696 735 262 136 70 chr1 14648145 14648490 -182546942 + MTE2a LTR MaLR 3 370 -9 1 696 1399 55 33 0 chr1 14648556 14648739 -182546693 - B2_Mm2 SINE B2 -6 189 1 1 696 27 0 0 0 chr1 14649136 14649163 -182546269 + AT_rich Low_complexity Low_complexity 1 27 0 1 696 207 0 0 0 chr1 14650653 14650676 -182544756 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 696 227 238 0 0 chr1 14650935 14650977 -182544455 + L2b LINE L2 3323 3364 -11 1 696 415 336 20 46 chr1 14650977 14651130 -182544302 + B1F SINE Alu 1 149 0 1 696 279 0 0 0 chr1 14651199 14651230 -182544202 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 696 305 347 51 46 chr1 14653806 14653981 -182541451 - MLT1J2 LTR MaLR 0 448 273 1 696 1322 81 0 61 chr1 14654745 14654943 -182540489 + B2_Mm2 SINE B2 1 186 -9 1 696 445 297 47 7 chr1 14655341 14655490 -182539942 + RSINE1 SINE B4 2 156 -9 1 696 1846 171 87 9 chr1 14655567 14655914 -182539518 - MTC LTR MaLR -1 420 47 1 696 1026 305 21 24 chr1 14656980 14657269 -182538163 - B4A SINE B4 -4 288 1 1 696 231 336 74 9 chr1 14657807 14657915 -182537517 + PB1D7 SINE Alu 1 115 -5 1 696 208 175 25 0 chr1 14657919 14657959 -182537473 + GA-rich Low_complexity Low_complexity 2 42 0 1 696 198 343 139 28 chr1 14659710 14659818 -182535614 - L2b LINE L2 -30 3345 3226 1 696 218 292 0 0 chr1 14661514 14661579 -182533853 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 696 213 224 16 23 chr1 14661750 14661844 -182533588 + GA-rich Low_complexity Low_complexity 1 93 0 1 696 2353 73 93 0 chr1 14663537 14663881 -182531551 - L1_Mus3 LINE L1 0 6638 6263 1 696 1809 96 0 25 chr1 14663881 14664160 -182531272 - L1_Mm LINE L1 -143 5740 5469 1 696 1525 259 39 74 chr1 14664438 14665056 -182530376 + Lx8 LINE L1 6429 7024 -449 1 696 375 23 0 0 chr1 14665094 14665138 -182530294 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 696 269 287 9 56 chr1 14665871 14665978 -182529454 + MIR SINE MIR 112 213 -49 1 696 205 204 23 0 chr1 14665991 14666035 -182529397 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 2 696 324 0 0 0 chr1 14666078 14666114 -182529318 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 696 1519 266 29 6 chr1 14666273 14666621 -182528811 - ORR1D2 LTR MaLR -9 361 6 2 696 252 333 38 9 chr1 14667540 14667646 -182527786 + MIRc SINE MIR 31 139 -129 2 696 464 320 75 0 chr1 14668121 14668268 -182527164 + RSINE1 SINE B4 2 159 -6 2 696 406 231 9 88 chr1 14668363 14668477 -182526955 + L1MB8 LINE L1 6041 6145 -33 2 696 219 257 80 67 chr1 14668848 14668923 -182526509 + B1F SINE Alu 66 141 -8 2 696 974 288 56 18 chr1 14670565 14670905 -182524527 - ORR1E LTR MaLR -6 353 1 2 696 411 225 0 0 chr1 14671866 14672143 -182523289 + (TG)n Simple_repeat Simple_repeat 1 277 0 2 696 584 219 8 26 chr1 14672350 14672467 -182522965 + B1F SINE Alu 28 142 -7 2 696 2535 34 75 0 chr1 14673888 14674183 -182521249 - L1Md_T LINE L1 -1 6581 6265 2 696 855 299 35 60 chr1 14674750 14675116 -182520316 + ORR1E LTR MaLR 1 357 -2 2 696 300 91 0 0 chr1 14675361 14675405 -182520027 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2 696 239 177 16 0 chr1 14676117 14676179 -182519253 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 2 696 658 276 42 6 chr1 14676216 14676384 -182519048 - B4A SINE B4 -116 176 3 2 696 251 252 60 86 chr1 14676384 14676474 -182518958 + MER31B LTR ERV1 61 147 -319 2 696 477 0 0 0 chr1 14676551 14676604 -182518828 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 696 232 337 23 98 chr1 14677905 14678016 -182517416 - ORR1E LTR MaLR -82 277 172 2 696 2658 124 12 26 chr1 14678016 14678431 -182517001 - RLTR9E LTR ERVK 0 409 1 2 696 232 337 23 98 chr1 14678431 14678533 -182516899 - ORR1E LTR MaLR -188 171 80 2 696 2684 121 7 79 chr1 14679171 14679214 -182516218 + MT2B LTR ERVL 1 43 -558 2 696 2886 78 143 139 chr1 14679214 14679724 -182515708 - RLTR1B LTR ERV1 0 512 1 2 10 2684 121 7 79 chr1 14679724 14680138 -182515294 + MT2B LTR ERVL 44 425 -176 2 697 873 290 5 18 chr1 14680372 14680590 -182514842 - B3 SINE B2 0 216 2 2 697 26 0 0 0 chr1 14680911 14680937 -182514495 + AT_rich Low_complexity Low_complexity 1 26 0 2 697 541 38 25 0 chr1 14681505 14681585 -182513847 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 697 231 167 0 0 chr1 14682918 14682960 -182512472 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 2 697 479 17 17 0 chr1 14683132 14683192 -182512240 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 697 1110 214 124 19 chr1 14683192 14683449 -182511983 - Lx9 LINE L1 -219 7425 7142 2 697 1196 192 215 71 chr1 14683478 14683803 -182511629 + ORR1D1 LTR MaLR 3 374 0 2 697 913 159 35 0 chr1 14683853 14683998 -182511434 - B1_Mur4 SINE Alu 0 150 1 2 697 719 140 0 8 chr1 14684008 14684138 -182511294 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 697 454 195 69 29 chr1 14684146 14684320 -182511112 + Lx9 LINE L1 7464 7644 0 2 697 1277 35 0 0 chr1 14684594 14684735 -182510697 + B1_Mm SINE Alu 2 142 -5 2 697 1829 162 94 6 chr1 14685190 14685520 -182509912 + ORR1B2 LTR MaLR 1 359 -8 2 697 769 322 53 30 chr1 14685521 14685787 -182509645 - L1MA4A LINE L1 -431 5872 5566 2 697 207 0 0 0 chr1 14685787 14685810 -182509622 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 697 769 323 76 29 chr1 14685810 14686205 -182509227 - L1MA4A LINE L1 -700 5600 5131 2 697 552 15 0 0 chr1 14686372 14686437 -182508995 + (TATG)n Simple_repeat Simple_repeat 3 67 0 2 697 263 207 11 109 chr1 14686469 14686561 -182508871 - L1MA4A LINE L1 -1151 4992 4910 2 697 1191 191 35 15 chr1 14686546 14686806 -182508626 - Lx5 LINE L1 -33 7017 6753 2 697 240 213 32 16 chr1 14686816 14686878 -182508554 - L1MD LINE L1 -1226 4920 4858 2 697 579 244 174 73 chr1 14687004 14687251 -182508181 + RLTR10A LTR ERVK 140 411 0 2 697 311 224 84 25 chr1 14687463 14687597 -182507835 + ORR1E LTR MaLR 226 370 0 2 697 630 330 22 0 chr1 14687721 14687900 -182507532 + B4 SINE B4 104 286 -6 2 697 398 101 14 0 chr1 14687929 14687998 -182507434 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 697 396 0 0 0 chr1 14687998 14688042 -182507390 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 697 425 278 27 27 chr1 14688147 14688313 -182507119 - L1PB4 LINE L1 -221 5935 5707 2 697 3206 304 76 36 chr1 14688459 14688563 -182506869 - Lx7 LINE L1 -336 7360 7244 2 697 504 0 0 0 chr1 14688563 14688619 -182506813 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 697 3206 304 76 36 chr1 14688619 14689524 -182505908 - Lx7 LINE L1 -453 7243 6311 2 697 806 30 10 0 chr1 14689524 14689625 -182505807 + (CAAAC)n Simple_repeat Simple_repeat 2 103 0 2 697 3206 304 76 36 chr1 14689625 14689928 -182505504 - Lx7 LINE L1 -1386 6310 5995 2 697 1815 252 53 48 chr1 14689976 14690130 -182505302 + L1_Mur3 LINE L1 5075 5216 -664 2 697 384 119 0 0 chr1 14690130 14690189 -182505243 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 697 1815 252 53 48 chr1 14690189 14690714 -182504718 + L1_Mur3 LINE L1 5217 5757 -123 2 697 524 87 0 12 chr1 14690975 14690989 -182504443 + (TC)n Simple_repeat Simple_repeat 1 13 0 2 697 902 18 0 73 chr1 14690989 14691167 -182504265 + (TTC)n Simple_repeat Simple_repeat 3 167 0 2 697 524 87 0 12 chr1 14691167 14691234 -182504198 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 697 382 267 48 0 chr1 14692079 14692184 -182503248 - MER20 DNA MER1_type -81 138 29 2 697 235 289 0 12 chr1 14692780 14692864 -182502568 + L1M5 LINE L1 5838 5920 -244 2 697 6039 84 18 1 chr1 14693011 14693923 -182501509 - L1_Mus2 LINE L1 -608 5958 5037 2 697 4817 74 27 0 chr1 14693925 14694519 -182500913 + L1_Mus2 LINE L1 5957 6566 0 2 697 623 292 22 38 chr1 14696345 14696530 -182498902 + B3A SINE B2 1 182 -16 2 697 532 253 104 31 chr1 14696922 14697114 -182498318 - L1MB5 LINE L1 -52 6122 5917 2 697 285 146 0 0 chr1 14697366 14697414 -182498018 + (CTG)n Simple_repeat Simple_repeat 3 50 0 2 697 346 307 20 10 chr1 14698062 14698164 -182497268 + ID_B1 SINE B4 114 216 -8 2 697 5133 114 97 72 chr1 14701193 14702073 -182493359 + RMER17A2 LTR ERVK 1 902 -4 2 697 339 216 101 25 chr1 14702293 14702412 -182493020 + MER121 Unknown Unknown 105 232 -180 2 697 311 0 0 25 chr1 14704959 14704999 -182490433 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 2 697 298 194 0 82 chr1 14704999 14705010 -182490422 - B1_Mur3 SINE Alu -1 148 138 2 697 1242 75 0 0 chr1 14705010 14705157 -182490275 - B1_Mus1 SINE Alu 0 148 2 2 697 298 194 0 82 chr1 14705157 14705218 -182490214 - B1_Mur3 SINE Alu -12 137 82 2 697 647 25 12 0 chr1 14705586 14705667 -182489765 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2 697 879 143 11 1 chr1 14705680 14705826 -182489606 - B2_Mm2 SINE B2 -57 159 2 2 697 615 195 54 8 chr1 14705971 14706100 -182489332 + B1F SINE Alu 14 148 -1 2 697 624 284 122 34 chr1 14708905 14709168 -182486264 + B4 SINE B4 1 286 -6 2 697 23437 159 28 70 chr1 14710047 14714997 -182480435 + L1_Mus4 LINE L1 545 5292 -591 2 697 1242 68 0 0 chr1 14714997 14715144 -182480288 + B1_Mus2 SINE Alu 1 147 0 2 697 23437 155 29 76 chr1 14715144 14715202 -182480230 + L1_Mus4 LINE L1 5293 5293 -590 2 697 3607 33 5 0 chr1 14715202 14715596 -182479836 - MTA_Mm LTR MaLR 0 396 1 2 697 23437 115 47 18 chr1 14715596 14716879 -182478553 + L1_Mus4 LINE L1 5293 6635 -1 2 697 357 62 0 0 chr1 14716934 14716982 -182478450 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 697 414 0 0 0 chr1 14716982 14717028 -182478404 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 2 697 185 293 51 51 chr1 14718090 14718169 -182477263 + MIRm SINE MIR 195 273 -3 2 697 275 151 67 27 chr1 14719107 14719182 -182476250 + T-rich Low_complexity Low_complexity 2 79 0 2 697 189 94 0 0 chr1 14719422 14719454 -182475978 + (T)n Simple_repeat Simple_repeat 1 32 0 2 697 1344 34 0 0 chr1 14719455 14719601 -182475831 - B1_Mm SINE Alu 0 147 2 2 697 497 144 11 0 chr1 14719773 14719863 -182475569 + CT-rich Low_complexity Low_complexity 3 93 0 2 697 850 254 50 60 chr1 14719886 14720104 -182475328 - ID_B1 SINE B4 -8 216 1 2 697 1400 163 43 14 chr1 14720325 14720709 -182474723 + Lx4A LINE L1 6639 7057 -1 2 697 1104 98 0 0 chr1 14720775 14720948 -182474484 + (GGA)n Simple_repeat Simple_repeat 2 174 0 2 697 188 111 0 27 chr1 14722565 14722602 -182472830 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 2 697 242 116 23 0 chr1 14722865 14722908 -182472524 + (CAA)n Simple_repeat Simple_repeat 1 44 0 2 697 482 306 143 25 chr1 14723141 14723386 -182472046 + RMER15 LTR ERVL 287 560 -15 2 697 259 379 15 15 chr1 14723398 14723532 -182471900 - MLT1A0 LTR MaLR -228 137 4 2 697 4556 138 30 71 chr1 14723925 14724863 -182470569 + RLTR13D6 LTR ERVK 1 870 -32 2 697 4085 231 51 6 chr1 14725326 14726228 -182469204 - Lx6 LINE L1 0 7460 6518 2 697 387 224 0 12 chr1 14726322 14726408 -182469024 + MTEa LTR MaLR 290 374 -5 2 697 1431 201 51 58 chr1 14727049 14727262 -182468170 + RMER17C LTR ERVK 1 205 -205 2 697 297 0 0 0 chr1 14727262 14727295 -182468137 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2 697 1431 201 51 58 chr1 14727295 14727494 -182467938 + RMER17C LTR ERVK 206 409 -1 2 697 2116 189 104 27 chr1 14727568 14728089 -182467343 - RLTR31_Mm LTR ERVK 0 561 1 2 697 305 241 36 0 chr1 14728645 14728728 -182466704 + MTD LTR MaLR 11 96 -323 2 697 253 204 0 0 chr1 14729063 14729112 -182466320 + MTD LTR MaLR 112 160 -259 2 697 749 300 72 4 chr1 14729228 14729492 -182465940 + MTD LTR MaLR 53 334 -85 2 697 24 0 0 0 chr1 14729671 14729695 -182465737 + GC_rich Low_complexity Low_complexity 1 24 0 2 697 242 250 0 0 chr1 14730180 14730232 -182465200 + G-rich Low_complexity Low_complexity 1 52 0 2 697 6896 157 11 35 chr1 14730893 14731144 -182464288 + Lx LINE L1 4639 4864 -1019 2 697 315 0 0 0 chr1 14731144 14731179 -182464253 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 697 722 81 261 0 chr1 14731189 14731300 -182464132 - B1_Mus1 SINE Alu -7 141 2 2 697 6896 138 15 28 chr1 14731300 14733024 -182462408 + Lx LINE L1 4865 6583 -71 2 697 5471 98 78 75 chr1 14733024 14734043 -182461389 - RLTR13D4 LTR ERVK 0 1033 11 2 697 471 132 36 0 chr1 14734043 14734126 -182461306 + Lx LINE L1 6565 6650 -4 2 697 240 35 0 0 chr1 14734127 14734156 -182461276 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 2 697 336 67 50 0 chr1 14734158 14734218 -182461214 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 697 195 100 0 0 chr1 14734558 14734588 -182460844 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 697 287 291 70 16 chr1 14734772 14734901 -182460531 + MIRc SINE MIR 19 154 -114 3 697 2651 92 93 12 chr1 14735227 14735636 -182459796 + L1_Mus4 LINE L1 6189 6630 -6 3 697 692 286 15 10 chr1 14735892 14736135 -182459297 - L1MA4 LINE L1 -364 5936 5623 3 697 252 0 0 0 chr1 14736410 14736438 -182458994 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 3 697 512 203 113 101 chr1 14736471 14736630 -182458802 - RSINE1 SINE B4 0 165 5 3 697 285 322 0 44 chr1 14736654 14736745 -182458687 - PB1 SINE Alu -7 120 34 3 697 315 49 0 0 chr1 14737905 14737946 -182457486 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 697 2183 173 52 10 chr1 14739088 14739490 -182455942 - MTC LTR MaLR -2 419 1 3 697 5847 186 42 11 chr1 14739490 14740693 -182454739 - MTC-int LTR MaLR 0 1258 19 3 697 1971 222 29 10 chr1 14740709 14741122 -182454310 - MTC LTR MaLR 0 421 1 3 697 370 202 0 37 chr1 14741142 14741224 -182454208 - PB1D7 SINE Alu -1 119 41 3 697 2349 160 20 61 chr1 14741261 14741720 -182453712 - Lx4A LINE L1 -21 7037 6598 3 697 1636 21 5 0 chr1 14742353 14742539 -182452893 + B2_Mm1t SINE B2 1 187 -6 3 697 257 89 22 0 chr1 14742596 14742641 -182452791 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 697 438 20 0 0 chr1 14742824 14742875 -182452557 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 697 513 80 0 0 chr1 14742875 14742950 -182452482 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 697 260 287 34 22 chr1 14743170 14743259 -182452173 + B1F2 SINE Alu 13 102 -47 3 697 405 0 0 0 chr1 14744674 14744719 -182450713 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 697 361 0 20 20 chr1 14747609 14747659 -182447773 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 697 24 53 0 0 chr1 14748585 14748623 -182446809 + AT_rich Low_complexity Low_complexity 1 38 0 3 697 335 414 14 0 chr1 14748679 14748819 -182446613 - B1F1 SINE Alu -7 142 1 3 697 330 132 0 0 chr1 14748827 14748880 -182446552 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 697 419 0 20 0 chr1 14748920 14748971 -182446461 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 697 250 325 26 0 chr1 14748981 14749058 -182446374 - ID SINE ID -144 80 2 3 697 466 130 37 22 chr1 14750463 14750597 -182444835 + (CA)n Simple_repeat Simple_repeat 1 136 0 3 697 410 154 30 23 chr1 14750622 14750755 -182444677 + (CA)n Simple_repeat Simple_repeat 1 134 0 3 697 277 183 48 0 chr1 14750797 14750901 -182444531 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 697 210 222 0 0 chr1 14751174 14751210 -182444222 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 697 345 290 23 15 chr1 14751308 14751441 -182443991 + Lx9 LINE L1 7238 7371 -273 3 697 350 241 11 33 chr1 14751644 14751734 -182443698 + PB1D10 SINE Alu 29 116 -1 3 697 24 53 0 0 chr1 14752172 14752210 -182443222 + AT_rich Low_complexity Low_complexity 1 38 0 3 697 1093 110 0 0 chr1 14753501 14753647 -182441785 + B1_Mus1 SINE Alu 1 146 -2 3 697 246 192 0 0 chr1 14753647 14753699 -182441733 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 3 697 225 0 0 0 chr1 14754001 14754026 -182441406 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 697 648 221 58 0 chr1 14754229 14754419 -182441013 - L1MEc LINE L1 -5496 904 704 3 697 420 20 0 0 chr1 14754423 14754472 -182440960 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 697 710 272 68 18 chr1 14754474 14754755 -182440677 - MT2A LTR ERVL -4 529 235 3 697 244 259 57 64 chr1 14755025 14755182 -182440250 - L1MEc LINE L1 -5780 620 465 3 697 298 109 15 30 chr1 14755183 14755249 -182440183 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 3 697 1130 269 37 27 chr1 14755544 14755919 -182439513 - L1MA4A LINE L1 -379 5924 5546 3 697 534 241 12 19 chr1 14755893 14756089 -182439343 - L1M4c LINE L1 -737 5679 5488 3 697 551 291 103 72 chr1 14756092 14756715 -182438717 - L1M4c LINE L1 -2312 4067 3426 3 697 655 272 106 119 chr1 14756889 14757505 -182437927 - L1M4c LINE L1 -2957 3425 2820 3 697 304 232 12 174 chr1 14757748 14757846 -182437586 - L1M4c LINE L1 -3887 2497 2420 3 697 1350 110 16 0 chr1 14757846 14758037 -182437395 - B2_Mm2 SINE B2 -1 194 1 3 697 304 232 12 174 chr1 14758037 14758105 -182437327 - L1M4c LINE L1 -3965 2419 2358 3 697 282 294 80 89 chr1 14758189 14758491 -182436941 - L1M4c LINE L1 -4234 2150 1852 3 697 360 0 0 0 chr1 14758558 14758598 -182436834 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 697 224 325 26 0 chr1 14758602 14758679 -182436753 - B4 SINE B4 -151 141 63 3 697 1015 213 177 18 chr1 14759039 14759378 -182436054 + MTD LTR MaLR 23 415 -4 3 697 390 387 32 11 chr1 14759382 14759570 -182435862 + B4 SINE B4 75 266 -26 3 697 285 29 0 0 chr1 14759573 14759607 -182435825 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 697 1008 114 11 11 chr1 14762508 14762685 -182432747 + (GGA)n Simple_repeat Simple_repeat 3 179 0 3 697 406 193 0 33 chr1 14763921 14764012 -182431420 + BC1_Mm scRNA scRNA 15 102 -50 3 697 444 67 0 0 chr1 14766517 14766577 -182428855 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 697 315 291 102 25 chr1 14766889 14767164 -182428268 - L1MDa LINE L1 -4126 2507 2212 3 697 546 315 74 30 chr1 14767400 14767698 -182427734 - L1MDa LINE L1 -4805 1828 1518 3 697 255 323 31 0 chr1 14770691 14770787 -182424645 - Charlie9 DNA MER1_type -2634 123 25 3 697 216 175 0 0 chr1 14773602 14773642 -182421790 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 3 697 1176 131 11 11 chr1 14773687 14773872 -182421560 - B2_Mm2 SINE B2 -10 185 1 3 697 6564 25 1 0 chr1 14773923 14774670 -182420762 - L1Md_T LINE L1 -1 6581 5834 3 697 792 299 10 0 chr1 14775759 14775966 -182419466 - B3 SINE B2 -6 210 2 3 697 22 0 0 0 chr1 14776503 14776525 -182418907 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 534 309 31 26 chr1 14778537 14778763 -182416669 - RMER15 LTR ERVL -13 562 336 3 697 916 251 18 41 chr1 14779740 14779960 -182415472 + B3 SINE B2 2 216 0 3 697 299 287 21 79 chr1 14780275 14780415 -182415017 - MIRb SINE MIR -88 180 49 3 697 2429 87 6 0 chr1 14780546 14780867 -182414565 - ORR1A2 LTR MaLR 0 327 5 3 697 426 293 164 40 chr1 14782571 14782994 -182412438 - Charlie1b DNA MER1_type -42 481 7 3 697 210 150 0 0 chr1 14783033 14783073 -182412359 + (A)n Simple_repeat Simple_repeat 1 40 0 3 697 202 114 29 0 chr1 14783690 14783725 -182411707 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 3 697 392 240 8 126 chr1 14784255 14784374 -182411058 - B4 SINE B4 -179 113 9 3 697 318 206 0 0 chr1 14784896 14784969 -182410463 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 697 23 0 0 0 chr1 14785576 14785599 -182409833 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 1217 77 6 0 chr1 14787602 14787772 -182407660 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 3 697 624 62 0 0 chr1 14787772 14787852 -182407580 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 3 697 1009 86 7 0 chr1 14787853 14787993 -182407439 + B1_Mus1 SINE Alu 8 148 0 3 697 350 150 0 20 chr1 14787994 14788096 -182407336 + A-rich Low_complexity Low_complexity 2 101 0 3 697 446 290 35 34 chr1 14788964 14789212 -182406220 - Lx8 LINE L1 -947 6526 6200 3 697 453 255 18 29 chr1 14789199 14789369 -182406063 + L1_Mur3 LINE L1 5273 5440 -440 3 697 383 0 21 0 chr1 14789369 14789416 -182406016 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 697 930 261 10 0 chr1 14789677 14789876 -182405556 - B3 SINE B2 -12 204 4 3 697 24 0 0 0 chr1 14790835 14790859 -182404573 + AT_rich Low_complexity Low_complexity 1 24 0 3 697 395 272 60 45 chr1 14791410 14791470 -182403962 + CYRA11_Mm Unknown Y-chromosome 128 325 -287 3 697 839 118 22 0 chr1 14791470 14791605 -182403827 - URR1A DNA MER1_type -14 212 75 3 697 2854 43 0 6 chr1 14791844 14792193 -182403239 + L1Md_F2 LINE L1 6221 6567 -15 3 697 216 0 0 0 chr1 14792300 14792324 -182403108 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 697 26437 127 60 21 chr1 14793430 14795782 -182399650 + L1_Mus2 LINE L1 613 2899 -2984 3 697 1170 23 0 0 chr1 14795782 14795915 -182399517 + B1_Mus2 SINE Alu 2 134 -13 3 697 193 0 94 0 chr1 14795915 14795947 -182399485 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 697 26437 101 45 11 chr1 14795947 14799364 -182396068 + L1_Mus2 LINE L1 2900 6562 -4 3 697 369 43 0 0 chr1 14799591 14799638 -182395794 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 697 964 285 90 3 chr1 14799897 14800242 -182395190 - MTEa LTR MaLR 0 379 5 3 697 290 301 23 63 chr1 14801063 14801237 -182394195 - Tigger6a DNA MER2_type -153 930 764 3 697 355 246 62 23 chr1 14801287 14801416 -182394016 - Tigger6a DNA MER2_type -620 463 330 3 697 383 302 92 8 chr1 14801507 14801637 -182393795 - Tigger6a DNA MER2_type -913 170 30 3 697 483 100 0 0 chr1 14801641 14801711 -182393721 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 3 697 1184 75 0 0 chr1 14802165 14802312 -182393120 - B1_Mus2 SINE Alu 0 147 1 3 697 596 228 0 6 chr1 14802942 14803114 -182392318 + GA-rich Low_complexity Low_complexity 3 173 0 3 697 279 0 0 0 chr1 14803782 14803813 -182391619 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 3 697 23 33 0 0 chr1 14803884 14803914 -182391518 + AT_rich Low_complexity Low_complexity 1 30 0 3 697 4583 47 0 11 chr1 14804010 14804573 -182390859 - L1Md_F2 LINE L1 -12 6570 6014 3 697 234 0 0 0 chr1 14804573 14804599 -182390833 + (T)n Simple_repeat Simple_repeat 1 26 0 3 697 348 24 0 0 chr1 14805561 14805602 -182389830 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 3 697 403 129 100 0 chr1 14805603 14805673 -182389759 - B1_Mus2 SINE Alu 0 147 71 3 697 281 245 147 0 chr1 14806293 14806395 -182389037 + L3b LINE CR1 161 277 -205 3 697 308 333 102 65 chr1 14807304 14807490 -182387942 + B3A SINE B2 5 197 -1 3 697 337 322 20 47 chr1 14807556 14807706 -182387726 - MT2B LTR ERVL -262 339 194 3 697 845 48 0 0 chr1 14807604 14807709 -182387723 - B1_Mm SINE Alu -9 138 34 3 697 345 109 0 0 chr1 14808371 14808426 -182387006 + (A)n Simple_repeat Simple_repeat 1 55 0 3 697 669 129 0 0 chr1 14809643 14809759 -182385673 + (CTTTG)n Simple_repeat Simple_repeat 4 119 0 3 697 1326 67 0 0 chr1 14809759 14809937 -182385495 + (CCTTG)n Simple_repeat Simple_repeat 1 178 0 3 697 360 167 72 72 chr1 14809938 14810035 -182385397 - ID_B1 SINE B4 -37 187 91 3 697 474 254 73 21 chr1 14810044 14810227 -182385205 - ORR1E LTR MaLR -169 205 9 4 697 268 274 37 40 chr1 14810585 14810714 -182384718 - MLT1E2 LTR MaLR 0 627 503 4 698 243 0 0 0 chr1 14811522 14811549 -182383883 + (TTC)n Simple_repeat Simple_repeat 1 27 0 4 698 393 22 0 0 chr1 14811549 14811595 -182383837 + (TTA)n Simple_repeat Simple_repeat 3 48 0 4 698 180 0 0 0 chr1 14811598 14811618 -182383814 + (TAG)n Simple_repeat Simple_repeat 1 20 0 4 698 357 24 0 0 chr1 14811619 14811661 -182383771 + (TATG)n Simple_repeat Simple_repeat 3 44 0 4 698 948 248 50 69 chr1 14811674 14811951 -182383481 - B4 SINE B4 -19 273 2 4 698 5679 42 0 17 chr1 14812050 14812757 -182382675 - L1Md_F2 LINE L1 -3 6579 5885 4 698 1015 290 22 62 chr1 14812770 14813090 -182382342 - MLT2B2 LTR ERVL -197 318 12 4 698 266 67 22 0 chr1 14813294 14813339 -182382093 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 4 698 288 161 0 0 chr1 14814043 14814105 -182381327 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 698 680 330 100 13 chr1 14814107 14814337 -182381095 - B4 SINE B4 -1 291 42 4 698 483 101 0 0 chr1 14814660 14814739 -182380693 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 698 21 0 0 0 chr1 14814866 14814887 -182380545 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 671 276 188 80 chr1 14815158 14815583 -182379849 + MT2A LTR ERVL 16 488 -45 4 698 621 40 0 0 chr1 14815583 14815659 -182379773 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 698 671 276 188 80 chr1 14815659 14815697 -182379735 + MT2A LTR ERVL 489 529 -4 4 698 434 299 72 24 chr1 14815906 14816142 -182379290 - ORR1E LTR MaLR -129 245 1 4 698 224 254 125 44 chr1 14816577 14816713 -182378719 + L2c LINE L2 3220 3366 -21 4 698 327 49 0 0 chr1 14817085 14817126 -182378306 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 698 626 106 0 42 chr1 14817780 14817898 -182377534 - Lx LINE L1 -5 6649 6537 4 698 6446 158 78 11 chr1 14817898 14819557 -182375875 - L1_Mm LINE L1 -109 5771 3715 4 698 547 297 149 0 chr1 14820536 14820711 -182374721 + RMER30 DNA MER1_type 2 202 0 4 698 323 167 0 15 chr1 14821430 14821497 -182373935 + Lx7 LINE L1 1837 1902 -3975 4 698 244 231 0 55 chr1 14821500 14821555 -182373877 + 4.5SRNA scRNA scRNA 35 86 -8 4 698 588 191 9 0 chr1 14821506 14821611 -182373821 + B1_Mur3 SINE Alu 43 148 -1 4 698 342 0 0 0 chr1 14821633 14821671 -182373761 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 698 730 166 45 40 chr1 14821676 14821721 -182373711 + Lx7 LINE L1 2070 2112 -3768 4 698 3481 40 0 156 chr1 14821721 14822284 -182373148 - IAPLTR2_Mm LTR ERVK 0 475 1 4 698 730 166 45 40 chr1 14822284 14822414 -182373018 + Lx7 LINE L1 2113 2246 -3634 4 698 2241 195 146 26 chr1 14822430 14822966 -182372466 + RMER19B LTR ERVK 301 900 -2 4 698 948 145 28 0 chr1 14822967 14823146 -182372286 + Lx7 LINE L1 2242 2425 -3455 4 698 8990 154 29 73 chr1 14823154 14824312 -182371120 + Lx7 LINE L1 3740 4852 -1028 4 698 1137 81 0 7 chr1 14824312 14824461 -182370971 + B1_Mus1 SINE Alu 1 148 0 4 698 8990 154 29 73 chr1 14824461 14824893 -182370539 + Lx7 LINE L1 4853 5241 -639 4 698 255 31 0 0 chr1 14824893 14824925 -182370507 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 698 8990 154 29 73 chr1 14824925 14825387 -182370045 + Lx7 LINE L1 5242 5702 -178 4 698 640 221 156 0 chr1 14825393 14825547 -182369885 + Lx6 LINE L1 6468 6645 -815 4 698 987 263 59 10 chr1 14825542 14825845 -182369587 + Lx6 LINE L1 7132 7449 -11 4 698 6982 210 61 65 chr1 14825845 14826250 -182369182 + Lx7 LINE L1 5725 6167 -1529 4 698 2263 121 3 0 chr1 14826250 14826572 -182368860 + ORR1A2 LTR MaLR 1 323 -4 4 698 6982 210 61 65 chr1 14826572 14828145 -182367287 + Lx7 LINE L1 6168 7695 -1 4 698 24 0 0 0 chr1 14828869 14828893 -182366539 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 2348 175 35 2 chr1 14830461 14830867 -182364565 - MTC LTR MaLR -2 419 1 4 698 613 233 72 43 chr1 14833930 14834014 -182361418 + B1_Mus2 SINE Alu 3 94 -53 4 698 3053 59 10 2 chr1 14834014 14834407 -182361025 + MTA_Mm LTR MaLR 1 396 0 4 698 613 233 72 43 chr1 14834407 14834461 -182360971 + B1_Mus2 SINE Alu 95 145 -2 4 698 327 314 8 17 chr1 14835046 14835166 -182360266 + CT-rich Low_complexity Low_complexity 2 120 0 4 698 530 323 60 18 chr1 14835169 14835402 -182360030 + MLT1A0 LTR MaLR 163 364 -1 4 698 2698 69 35 0 chr1 14835696 14836136 -182359296 - MusHAL1 LINE L1 -2550 803 342 4 698 1567 268 17 45 chr1 14836136 14836598 -182358834 + RMER19C LTR ERVK 163 611 0 4 698 504 322 26 32 chr1 14836781 14836935 -182358497 - RSINE1 SINE B4 -10 155 3 4 698 21 0 0 0 chr1 14838613 14838634 -182356798 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 28356 113 18 11 chr1 14838671 14842818 -182352614 + L1_Mus1 LINE L1 610 4733 -1150 4 698 243 0 0 0 chr1 14842818 14842845 -182352587 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 698 28356 79 19 6 chr1 14842845 14844623 -182350809 + L1_Mus1 LINE L1 4734 6652 -2 4 698 21 0 0 0 chr1 14844638 14844659 -182350773 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 436 321 30 64 chr1 14844740 14844943 -182350489 + MLT2D LTR ERVL 212 407 -7 4 698 326 123 0 17 chr1 14846209 14846267 -182349165 + (TTC)n Simple_repeat Simple_repeat 2 58 0 4 698 7696 48 1 6 chr1 14846289 14847377 -182348055 - L1Md_F2 LINE L1 0 6582 5500 4 698 673 54 0 32 chr1 14847369 14847464 -182347968 + L1_Mm LINE L1 4010 4101 -1782 4 698 6411 131 41 1 chr1 14849428 14851040 -182344392 + Lx LINE L1 4961 6635 -19 4 698 348 127 0 0 chr1 14851298 14851353 -182344079 + (TCC)n Simple_repeat Simple_repeat 2 56 0 4 698 269 219 68 14 chr1 14851422 14851496 -182343936 - ID4_ SINE ID -5 78 1 4 698 450 0 0 0 chr1 14851899 14851949 -182343483 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 698 189 0 0 0 chr1 14852482 14852503 -182342929 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 698 5422 19 2 13 chr1 14852987 14853621 -182341811 + L1Md_F2 LINE L1 5955 6581 -1 4 698 571 290 104 115 chr1 14853728 14854016 -182341416 + B4 SINE B4 8 292 0 4 698 601 93 17 17 chr1 14854016 14854136 -182341296 + (CAGAGA)n Simple_repeat Simple_repeat 3 122 0 4 698 202 237 0 0 chr1 14854444 14854482 -182340950 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 4 698 429 337 89 11 chr1 14854810 14854990 -182340442 + MLT1A1 LTR MaLR 6 199 -209 4 698 240 35 0 0 chr1 14856102 14856131 -182339301 + (A)n Simple_repeat Simple_repeat 1 29 0 4 698 956 297 74 45 chr1 14856224 14856644 -182338788 - MLT2B1 LTR ERVL -8 512 81 4 698 274 289 103 24 chr1 14856956 14857126 -182338306 - RMER20B LTR ERVK -198 318 144 4 698 292 291 144 10 chr1 14857298 14857402 -182338030 - MER5A1 DNA MER1_type 0 166 49 4 698 251 263 62 21 chr1 14859178 14859275 -182336157 - MIR SINE MIR -8 254 154 4 698 764 232 58 15 chr1 14862770 14863040 -182332392 - ORR1E LTR MaLR -4 355 1 4 698 199 318 67 11 chr1 14864008 14864097 -182331335 - MIR SINE MIR -124 138 45 4 698 248 292 42 0 chr1 14864951 14865023 -182330409 - ID4 SINE ID -1 82 8 4 698 254 176 0 161 chr1 14866687 14866768 -182328664 - ID4 SINE ID 0 83 16 4 698 192 179 0 0 chr1 14868473 14868512 -182326920 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 698 229 303 45 0 chr1 14869499 14869565 -182325867 + B1F SINE Alu 46 114 -35 4 698 432 0 0 0 chr1 14869577 14869625 -182325807 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 698 387 152 0 0 chr1 14869626 14869705 -182325727 + GA-rich Low_complexity Low_complexity 2 80 0 4 698 483 188 5 49 chr1 14869727 14869912 -182325520 + (CATA)n Simple_repeat Simple_repeat 2 178 0 4 698 296 232 10 0 chr1 14869941 14870040 -182325392 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 698 330 304 76 0 chr1 14870527 14870711 -182324721 + Lx6 LINE L1 7262 7459 -1 4 698 285 321 71 9 chr1 14871022 14871135 -182324297 - L2b LINE L2 -232 3143 3024 4 698 266 209 76 110 chr1 14871471 14871589 -182323843 + ORR1D2 LTR MaLR 257 370 0 4 698 758 175 17 6 chr1 14872475 14872653 -182322779 + CT-rich Low_complexity Low_complexity 1 180 0 4 698 433 35 0 0 chr1 14873047 14873104 -182322328 + L1_Mus2 LINE L1 6507 6563 -3 4 698 242 302 45 34 chr1 14873820 14873909 -182321523 + MER20 DNA MER1_type 45 134 -85 4 698 216 186 0 23 chr1 14874438 14874482 -182320950 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 4 698 30 69 0 0 chr1 14875043 14875101 -182320331 + AT_rich Low_complexity Low_complexity 1 58 0 4 698 253 301 35 88 chr1 14875232 14875249 -182320183 + MT2B LTR ERVL 149 255 -346 4 698 294 284 73 10 chr1 14875249 14875345 -182320087 + B1F1 SINE Alu 1 102 -47 4 698 400 311 40 20 chr1 14876360 14876511 -182318921 - RSINE1 SINE B4 -10 155 2 4 698 344 358 45 32 chr1 14876558 14876714 -182318718 - L1MB5 LINE L1 -41 6133 5976 4 698 834 136 57 25 chr1 14877873 14878031 -182317401 - Lx3_Mus LINE L1 -640 6369 6207 4 698 4694 81 30 1 chr1 14878031 14878687 -182316745 + Lx3_Mus LINE L1 6335 7009 0 4 698 200 194 0 0 chr1 14878763 14878799 -182316633 + GA-rich Low_complexity Low_complexity 4 39 0 4 698 24 67 0 0 chr1 14879068 14879113 -182316319 + AT_rich Low_complexity Low_complexity 1 45 0 4 698 333 0 0 0 chr1 14879642 14879679 -182315753 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 4 698 813 279 5 0 chr1 14879681 14879878 -182315554 - B3 SINE B2 -17 199 2 4 698 22 0 0 0 chr1 14880433 14880455 -182314977 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 828 270 37 0 chr1 14882404 14882593 -182312839 + B3 SINE B2 15 210 -6 4 698 445 294 103 0 chr1 14882768 14882914 -182312518 - RSINE1 SINE B4 0 165 5 4 698 423 0 0 0 chr1 14883638 14883685 -182311747 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 698 267 342 54 64 chr1 14883831 14884012 -182311420 - Charlie18a DNA MER1_type -2 340 161 4 698 681 262 68 111 chr1 14884012 14884407 -182311025 + MTE2a LTR MaLR 2 379 0 4 698 267 342 54 64 chr1 14884407 14884428 -182311004 - Charlie18a DNA MER1_type -182 160 140 4 698 681 243 45 154 chr1 14884428 14884818 -182310614 + MTE2a-int LTR MaLR 1 636 -944 4 698 1044 284 142 72 chr1 14884808 14885256 -182310176 + MTE2a-int LTR MaLR 633 1274 -306 4 698 2111 184 63 2 chr1 14885256 14885653 -182309779 - MTC LTR MaLR 0 421 1 4 698 1044 275 136 78 chr1 14885653 14885894 -182309538 + MTE2a-int LTR MaLR 981 1253 -5 4 698 316 271 78 54 chr1 14885897 14886026 -182309406 + MTE2a LTR MaLR 1 132 -287 4 698 342 247 41 41 chr1 14886121 14886218 -182309214 + MTE2a LTR MaLR 308 404 -15 4 698 594 91 0 0 chr1 14889685 14889784 -182305648 + (GA)n Simple_repeat Simple_repeat 2 100 0 4 698 237 33 0 0 chr1 14891993 14892023 -182303409 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 698 24 0 0 0 chr1 14892133 14892157 -182303275 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 343 257 86 29 chr1 14892663 14892803 -182302629 - L1M2 LINE L1 -3754 2389 2242 5 698 21 36 0 0 chr1 14894064 14894092 -182301340 + AT_rich Low_complexity Low_complexity 1 28 0 5 698 185 261 85 21 chr1 14895466 14895513 -182299919 + L4 LINE RTE 1791 1840 -189 5 698 1061 205 43 19 chr1 14895513 14895722 -182299710 - B3 SINE B2 -2 214 1 5 698 249 252 165 50 chr1 14897843 14897964 -182297468 - B1F SINE Alu -10 139 5 5 698 231 36 0 0 chr1 14897991 14898019 -182297413 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 698 1071 200 23 5 chr1 14899829 14900045 -182295387 - URR1A DNA MER1_type -1 225 6 5 698 214 313 59 15 chr1 14900412 14900480 -182294952 + MIRm SINE MIR 101 171 -105 5 698 229 337 11 11 chr1 14900572 14900665 -182294767 + (CACCAT)n Simple_repeat Simple_repeat 6 98 0 5 698 540 30 0 0 chr1 14901642 14901708 -182293724 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 698 253 139 0 0 chr1 14901977 14902013 -182293419 - U2 snRNA snRNA -152 36 1 5 698 975 112 35 14 chr1 14902918 14903063 -182292369 + B1_Mus1 SINE Alu 1 148 0 5 698 198 0 0 0 chr1 14903441 14903463 -182291969 + (T)n Simple_repeat Simple_repeat 1 22 0 5 698 1203 14 20 14 chr1 14903463 14903609 -182291823 - B1_Mus2 SINE Alu 0 147 1 5 698 258 258 181 24 chr1 14904047 14904174 -182291258 - B1F SINE Alu 0 149 3 5 698 747 314 9 19 chr1 14904471 14904682 -182290750 - ID_B1 SINE B4 0 224 16 5 698 5906 125 40 25 chr1 14904855 14905853 -182289579 + Lx2 LINE L1 5985 6997 0 5 698 195 139 0 0 chr1 14906792 14906828 -182288604 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 698 328 325 23 47 chr1 14907745 14907916 -182287516 + L1MC4a LINE L1 5721 5887 -1995 5 698 351 0 0 0 chr1 14909141 14909180 -182286252 + (A)n Simple_repeat Simple_repeat 1 39 0 5 698 702 264 25 81 chr1 14909397 14909632 -182285800 + ID_B1 SINE B4 3 224 0 5 698 363 338 152 14 chr1 14911602 14911899 -182283533 - L1ME1 LINE L1 -62 6977 6640 5 698 3050 45 6 6 chr1 14911899 14912289 -182283143 - MTA_Mm LTR MaLR -16 380 6 5 698 406 295 116 24 chr1 14912467 14913024 -182282408 - L1ME1 LINE L1 -603 6436 5829 5 698 211 213 0 0 chr1 14913074 14913121 -182282311 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 5 698 338 281 80 44 chr1 14913161 14913436 -182281996 - L1ME1 LINE L1 -1281 5725 5441 5 698 502 282 34 27 chr1 14913890 14914036 -182281396 + B1F1 SINE Alu 1 147 -2 5 698 310 262 179 8 chr1 14914092 14914215 -182281217 - L1ME1 LINE L1 -2005 5001 4858 5 698 583 332 151 13 chr1 14914219 14914536 -182280896 + Tigger7 DNA MER2_type 78 438 -2053 5 698 212 233 14 0 chr1 14914539 14914612 -182280820 + GA-rich Low_complexity Low_complexity 4 77 0 5 698 411 299 57 31 chr1 14914620 14914813 -182280619 + Tigger7 DNA MER2_type 402 599 -1892 5 698 276 263 0 17 chr1 14914834 14914892 -182280540 + Tigger7 DNA MER2_type 2434 2490 -1 5 698 313 246 77 119 chr1 14914971 14915195 -182280237 + ORR1E LTR MaLR 1 191 -176 5 698 417 272 118 25 chr1 14915171 14915314 -182280118 + ORR1E LTR MaLR 144 325 -54 5 698 417 279 225 13 chr1 14915356 14915672 -182279760 - L1MD LINE L1 -2645 3501 3119 5 698 516 316 20 46 chr1 14915821 14916123 -182279309 - L1ME1 LINE L1 -3224 3782 3489 5 698 590 261 70 23 chr1 14916546 14916717 -182278715 - B3 SINE B2 -2 214 53 5 698 659 291 92 32 chr1 14916736 14917116 -182278316 - Lx8 LINE L1 -201 7272 6870 5 698 543 308 122 25 chr1 14917571 14918305 -182277127 - L1ME1 LINE L1 -5028 2306 1452 5 698 216 0 0 0 chr1 14918305 14918329 -182277103 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5 698 543 327 133 27 chr1 14918329 14918407 -182277025 - L1ME1 LINE L1 -5883 1451 1441 5 698 300 200 0 0 chr1 14918823 14918923 -182276509 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 698 665 43 0 11 chr1 14918925 14919019 -182276413 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 698 459 0 0 0 chr1 14919019 14919069 -182276363 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 698 447 19 0 0 chr1 14920169 14920221 -182275211 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 698 23 0 0 0 chr1 14921014 14921037 -182274395 + AT_rich Low_complexity Low_complexity 1 23 0 5 698 738 161 200 6 chr1 14921521 14921696 -182273736 - B3 SINE B2 -7 209 1 5 698 626 273 58 145 chr1 14921831 14922246 -182273186 - MTE2a LTR MaLR 0 379 1 5 698 341 279 28 46 chr1 14922273 14922382 -182273050 + PB1D10 SINE Alu 6 112 -5 5 698 388 310 10 0 chr1 14922401 14922501 -182272931 + PB1D7 SINE Alu 13 113 -7 5 698 2296 218 12 53 chr1 14922667 14923311 -182272121 - L1_Mur2 LINE L1 -843 5037 4420 5 698 4953 132 7 3 chr1 14923844 14924619 -182270813 + RMER12 LTR ERVK 1 778 -544 5 698 372 22 0 0 chr1 14924620 14924665 -182270767 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 698 455 226 47 155 chr1 14924696 14924955 -182270477 + RMER12 LTR ERVK 994 1224 -98 5 698 562 197 34 0 chr1 14925046 14925192 -182270240 - Lx5 LINE L1 -7 7051 6865 5 698 843 185 41 95 chr1 14925192 14925413 -182270019 + RLTR21 LTR ERVK 462 670 -902 5 698 965 124 0 27 chr1 14925432 14925615 -182269817 + CT-rich Low_complexity Low_complexity 3 180 0 5 698 263 200 0 16 chr1 14925656 14925717 -182269715 - Lx4B LINE L1 -49 7009 6950 5 698 1794 171 19 54 chr1 14925717 14926179 -182269253 + RMER17C LTR ERVK 16 437 -521 5 698 303 134 88 15 chr1 14926179 14926247 -182269185 - Lx4B LINE L1 -105 6953 6881 5 698 364 210 12 0 chr1 14926259 14926340 -182269092 - L1_Mur2 LINE L1 -6621 465 384 5 698 359 400 7 0 chr1 14926361 14926511 -182268921 + ORR1D2 LTR MaLR 85 235 -135 5 698 24 32 0 0 chr1 14926958 14926989 -182268443 + AT_rich Low_complexity Low_complexity 1 31 0 5 698 22 0 0 0 chr1 14927053 14927075 -182268357 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 1014 129 0 0 chr1 14927558 14927721 -182267711 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 5 698 267 285 74 42 chr1 14928440 14928558 -182266874 - MIR SINE MIR -58 210 87 5 698 11183 98 8 8 chr1 14929331 14932666 -182262766 - L1_Mus2 LINE L1 0 6566 1425 5 698 1573 52 0 0 chr1 14932666 14932858 -182262574 - B2_Mm1t SINE B2 -1 192 1 5 698 11183 147 4 80 chr1 14932858 14933628 -182261804 - L1_Mus2 LINE L1 -4459 1424 725 5 698 395 272 16 8 chr1 14933638 14933764 -182261668 - L1_Mus2 LINE L1 -5815 801 675 5 698 331 257 31 166 chr1 14933845 14934008 -182261424 - L1VL1 LINE L1 -6065 357 217 5 698 288 0 0 0 chr1 14935107 14935139 -182260293 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 698 585 219 42 0 chr1 14936226 14936345 -182259087 + B2_Mm2 SINE B2 3 126 -69 5 698 492 296 0 25 chr1 14936995 14937113 -182258319 + PB1D7 SINE Alu 1 115 -5 5 698 235 271 0 0 chr1 14937283 14937342 -182258090 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 698 336 252 111 0 chr1 14937369 14937468 -182257964 + Lx7 LINE L1 6576 6685 -1011 5 698 814 260 110 13 chr1 14937511 14937819 -182257613 + Lx8 LINE L1 6814 7151 -322 5 698 200 93 22 44 chr1 14937910 14937955 -182257477 + A-rich Low_complexity Low_complexity 2 45 0 5 698 183 80 0 0 chr1 14938108 14938133 -182257299 + (A)n Simple_repeat Simple_repeat 1 25 0 5 698 241 291 11 55 chr1 14938608 14938699 -182256733 - L2a LINE L2 0 3426 3340 5 698 562 229 108 11 chr1 14938780 14939040 -182256392 + L1MA5 LINE L1 2924 3208 -2935 5 698 573 294 86 76 chr1 14939323 14939770 -182255662 + L1MA5 LINE L1 3217 3689 -2454 5 698 1065 101 0 0 chr1 14939770 14939949 -182255483 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 698 573 294 86 76 chr1 14939949 14940027 -182255405 + L1MA5 LINE L1 3690 3747 -2396 5 698 301 310 42 62 chr1 14940278 14940749 -182254683 + L1MA5 LINE L1 4749 5210 -933 5 698 1070 275 98 53 chr1 14940760 14941747 -182253685 + L1MA5 LINE L1 5263 6294 -6 5 698 783 251 43 0 chr1 14941773 14941936 -182253496 + B3 SINE B2 2 171 -45 5 699 3019 28 6 6 chr1 14942814 14943176 -182252256 - L1Md_F2 LINE L1 -4 6578 6217 5 699 21 36 0 0 chr1 14943774 14943802 -182251630 + AT_rich Low_complexity Low_complexity 1 28 0 5 699 404 311 16 0 chr1 14943935 14944057 -182251375 - RSINE1 SINE B4 -38 127 4 5 699 3186 48 15 5 chr1 14944084 14944479 -182250953 + L1Md_F2 LINE L1 6181 6579 -3 5 699 24 0 0 0 chr1 14945636 14945660 -182249772 + AT_rich Low_complexity Low_complexity 1 24 0 5 699 7975 43 13 10 chr1 14946478 14947576 -182247856 - L1Md_F2 LINE L1 0 6582 5484 5 699 432 97 0 0 chr1 14948240 14948302 -182247130 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 699 1082 95 0 31 chr1 14948486 14948649 -182246783 - L1_Mus1 LINE L1 0 6567 6410 5 699 3040 77 5 5 chr1 14948730 14949124 -182246308 - MTA_Mm LTR MaLR 0 396 3 5 699 932 211 237 0 chr1 14949173 14949443 -182245989 + Lx9 LINE L1 6617 6950 -694 5 699 2315 12 0 0 chr1 14949441 14949695 -182245737 + L1Md_A LINE L1 5333 5586 -297 5 699 9224 2 0 0 chr1 14949695 14950691 -182244741 + L1Md_A LINE L1 5587 6582 0 5 699 1339 284 62 44 chr1 14950700 14951208 -182244224 + Lx9 LINE L1 6741 7426 -218 5 699 189 0 0 0 chr1 14951424 14951445 -182243987 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 699 21 0 0 0 chr1 14951491 14951512 -182243920 + AT_rich Low_complexity Low_complexity 1 21 0 5 699 503 198 35 18 chr1 14951533 14951646 -182243786 + PB1D10 SINE Alu 3 117 0 5 699 1832 130 36 3 chr1 14952291 14952600 -182242832 + ORR1A2 LTR MaLR 1 319 -8 5 699 3657 198 99 25 chr1 14952605 14953595 -182241837 + ORR1A2-int LTR MaLR 2 1065 -898 5 699 201 39 0 0 chr1 14953595 14953621 -182241811 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 699 3657 198 99 25 chr1 14953621 14953632 -182241800 + ORR1A2-int LTR MaLR 1066 1076 -887 5 699 7635 77 6 1 chr1 14953632 14954709 -182240723 - L1_Mus1 LINE L1 -20 6547 5466 5 699 5392 113 6 2 chr1 14954710 14955544 -182239888 + ORR1A2-int LTR MaLR 1127 1963 0 5 699 1331 132 14 9 chr1 14955544 14955762 -182239670 + ORR1A2 LTR MaLR 1 219 -108 5 699 335 134 60 0 chr1 14955762 14955829 -182239603 + LTRIS5 LTR ERV1 1 71 -376 5 699 909 153 72 31 chr1 14955885 14956107 -182239325 + LTRIS5 LTR ERV1 217 447 0 5 699 286 219 24 102 chr1 14956107 14956234 -182239198 + MMVL30-int LTR ERV1 1 117 -3581 5 699 5491 241 81 26 chr1 14956271 14956771 -182238661 + MuRRS4-int LTR ERV1 1 566 -4497 5 699 231 36 0 0 chr1 14956771 14956799 -182238633 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 699 1218 75 0 60 chr1 14956802 14956987 -182238445 - L1_Mus1 LINE L1 -6 6561 6388 5 699 5491 265 45 44 chr1 14956987 14958740 -182236692 + MuRRS4-int LTR ERV1 567 2575 -5203 5 699 1321 183 0 5 chr1 14958770 14959014 -182236418 + MuRRS4-int LTR ERV1 3452 3669 -1021 5 699 439 233 0 0 chr1 14959012 14959115 -182236317 + MMERGLN-int LTR ERV1 4064 4166 -3390 5 699 1698 188 0 0 chr1 14959114 14959391 -182236041 + MuRRS4-int LTR ERV1 3729 4005 -1058 5 699 39727 33 2 0 chr1 14959393 14964796 -182230636 - L1Md_T LINE L1 0 6582 1170 5 699 5758 167 26 32 chr1 14964802 14966320 -182229112 - L1Md_T LINE L1 -5411 1205 99 5 699 1771 198 26 28 chr1 14966355 14966737 -182228695 + MuRRS4-int LTR ERV1 4126 4454 -236 5 699 1086 210 59 0 chr1 14966851 14967070 -182228362 + MuRRS-int LTR ERV1 4459 4690 0 5 699 393 90 60 0 chr1 14967070 14967137 -182228295 + LTRIS5 LTR ERV1 1 71 -376 5 699 1097 121 29 35 chr1 14967173 14967404 -182228028 + LTRIS5 LTR ERV1 217 512 0 5 699 815 62 0 0 chr1 14967404 14967515 -182227917 + ORR1A3 LTR MaLR 216 326 0 5 699 304 379 41 0 chr1 14967544 14967689 -182227743 + B4A SINE B4 42 192 -100 5 699 5918 81 18 15 chr1 14967727 14968542 -182226890 - L1Md_F2 LINE L1 0 6582 5765 5 699 5815 167 35 77 chr1 14969274 14970514 -182224918 + Lx5 LINE L1 5863 7050 0 5 699 288 0 0 0 chr1 14970837 14970869 -182224563 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 699 802 147 7 0 chr1 14971373 14971516 -182223916 - URR1A DNA MER1_type -1 225 82 6 699 1289 152 158 126 chr1 14973156 14973593 -182221839 + RMER6B LTR ERVK 1 451 -10 6 699 306 0 0 0 chr1 14973944 14973978 -182221454 + (A)n Simple_repeat Simple_repeat 1 34 0 6 699 18478 73 2 2 chr1 14973978 14976412 -182219020 - L1_Mm LINE L1 -1161 4722 2290 6 699 904 257 29 0 chr1 14976548 14976758 -182218674 - B3 SINE B2 0 216 1 6 699 1154 266 90 6 chr1 14976907 14977251 -182218181 - Lx9 LINE L1 -142 7502 7130 6 699 372 233 73 22 chr1 14977256 14977392 -182218040 + Lx9 LINE L1 7502 7644 0 6 699 237 346 75 38 chr1 14977656 14977842 -182217590 - MLT1A LTR MaLR 0 374 182 6 699 41193 16 1 6 chr1 14978672 14985036 -182210396 - L1Md_A LINE L1 0 6582 252 6 699 554 327 29 18 chr1 14986359 14986633 -182208799 + B4A SINE B4 2 278 -14 6 699 230 264 0 0 chr1 14986652 14986705 -182208727 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6 699 266 255 63 11 chr1 14987513 14987608 -182207824 - ORR1E LTR MaLR -251 108 9 6 699 361 175 29 7 chr1 14987724 14987862 -182207570 + (TA)n Simple_repeat Simple_repeat 2 142 0 6 699 263 276 159 38 chr1 14988212 14988403 -182207029 - L1MC4 LINE L1 -1078 6964 6716 6 699 297 229 104 0 chr1 14988614 14988710 -182206722 - L1MC4 LINE L1 -1594 6448 6343 6 699 11046 136 172 14 chr1 14989765 14994858 -182200574 - Lx2 LINE L1 -1 6996 549 6 699 184 77 25 25 chr1 14995073 14995113 -182200319 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 699 249 329 12 0 chr1 14995822 14995907 -182199525 + LTR33B LTR ERVL 74 159 -344 6 699 2228 52 28 0 chr1 14996956 14997242 -182198190 + L1_Mus1 LINE L1 6270 6563 -4 6 699 258 315 33 0 chr1 14997271 14997363 -182198069 + Helitron1Nb_Mam RC Helitron 148 242 -874 6 699 312 27 0 0 chr1 14997537 14997574 -182197858 + (GGA)n Simple_repeat Simple_repeat 2 38 0 6 699 255 93 0 0 chr1 15000046 15000089 -182195343 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 699 941 137 20 0 chr1 15000433 15000586 -182194846 - URR1A DNA MER1_type 0 226 71 2 699 4423 76 10 0 chr1 15000687 15001304 -182194128 - L1_Mus3 LINE L1 -179 6459 5837 3 699 488 195 0 0 chr1 15001304 15001391 -182194041 - URR1A DNA MER1_type -139 87 1 2 699 317 294 119 0 chr1 15002390 15002516 -182192916 + B1F2 SINE Alu 4 144 -5 4 699 253 323 0 0 chr1 15002942 15003004 -182192428 + ID SINE ID 17 78 -146 5 699 400 396 45 14 chr1 15003182 15003402 -182192030 - MLT1F2 LTR MaLR -2 558 332 6 699 620 343 104 49 chr1 15003447 15003775 -182191657 - MLT1E3 LTR MaLR 0 624 279 7 699 243 292 0 14 chr1 15003907 15003980 -182191452 - MLT1E3 LTR MaLR -415 212 141 7 699 4264 160 14 8 chr1 15004003 15004803 -182190629 - L1_Mm LINE L1 -78 5805 5001 8 699 3137 177 16 9 chr1 15004803 15005367 -182190065 + Lx LINE L1 6086 6653 -1 9 699 462 276 0 27 chr1 15005368 15005517 -182189915 + L1_Rod LINE L1 4926 5070 -777 1 699 850 213 86 16 chr1 15005602 15005845 -182189587 + Lx9 LINE L1 6831 7090 -554 1 699 25 31 0 0 chr1 15005847 15005879 -182189553 + AT_rich Low_complexity Low_complexity 1 32 0 1 699 22 0 0 0 chr1 15006824 15006846 -182188586 + AT_rich Low_complexity Low_complexity 1 22 0 1 699 2583 248 117 15 chr1 15007255 15008179 -182187253 - RMER1A Other Other -5 1025 8 1 699 1106 234 155 10 chr1 15008203 15008962 -182186470 - RMER1A Other Other -588 478 1 1 699 21 0 0 0 chr1 15009248 15009269 -182186163 + AT_rich Low_complexity Low_complexity 1 21 0 1 699 407 247 92 33 chr1 15010086 15010130 -182185302 - L1M4b LINE L1 -4089 3245 3202 1 699 257 0 30 0 chr1 15010130 15010163 -182185269 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 699 407 247 92 33 chr1 15010163 15010302 -182185130 - L1M4b LINE L1 -4133 3201 3051 1 699 36504 10 0 7 chr1 15010380 15015572 -182179860 + L1Md_A LINE L1 437 5586 -297 1 699 8872 13 0 0 chr1 15015572 15016568 -182178864 + L1Md_A LINE L1 5587 6582 0 1 699 499 259 70 55 chr1 15016581 15016924 -182178508 - L1M4b LINE L1 -4440 2894 2547 1 699 321 276 65 5 chr1 15016936 15017164 -182178268 - L1M4b LINE L1 -4561 2541 2235 1 699 234 0 0 0 chr1 15017225 15017251 -182178181 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 2 699 421 342 36 42 chr1 15017258 15017423 -182178009 - B3 SINE B2 -51 165 2 2 699 444 281 114 31 chr1 15017618 15018003 -182177429 - L1M4b LINE L1 -4938 1966 1550 1 699 348 24 0 0 chr1 15018074 15018115 -182177317 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 699 1183 260 117 27 chr1 15018933 15019301 -182176131 - MTD LTR MaLR -1 418 18 2 699 444 250 9 27 chr1 15019526 15019637 -182175795 + ID_B1 SINE B4 76 184 -40 2 699 731 80 10 0 chr1 15019539 15019639 -182175793 + B1_Mus1 SINE Alu 8 108 -40 2 699 6805 68 24 2 chr1 15019632 15020540 -182174892 - RLTR13D5 LTR ERVK -95 928 1 2 699 528 332 41 26 chr1 15021808 15022003 -182173429 + B3A SINE B2 1 198 0 2 699 22 0 0 0 chr1 15022003 15022025 -182173407 + AT_rich Low_complexity Low_complexity 1 22 0 2 699 338 347 65 43 chr1 15022895 15023079 -182172353 - MER21B LTR ERV1 -331 532 345 2 699 1765 218 13 169 chr1 15023371 15023510 -182171922 + RMER15 LTR ERVL 1 83 -492 3 699 5340 3 0 0 chr1 15023510 15024097 -182171335 - L1Md_A LINE L1 0 6582 5996 3 699 1765 218 13 169 chr1 15024097 15024514 -182170918 + RMER15 LTR ERVL 84 470 -105 3 699 222 62 0 0 chr1 15024515 15024547 -182170885 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 3 699 459 125 0 0 chr1 15024905 15024977 -182170455 + (TCCC)n Simple_repeat Simple_repeat 3 74 0 3 699 21 71 0 0 chr1 15025322 15025364 -182170068 + AT_rich Low_complexity Low_complexity 1 42 0 3 699 5302 31 2 0 chr1 15025474 15026094 -182169338 - L1Md_T LINE L1 0 6582 5962 3 699 7758 29 0 0 chr1 15026096 15027700 -182167732 - L1Md_T LINE L1 0 6582 4979 3 699 246 338 36 67 chr1 15027779 15027944 -182167488 - Lx8 LINE L1 -145 7328 7169 3 699 45 79 0 0 chr1 15029072 15029173 -182166259 + AT_rich Low_complexity Low_complexity 1 101 0 3 699 740 95 29 0 chr1 15029299 15029436 -182165996 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 3 699 298 262 112 34 chr1 15029568 15029746 -182165686 - L1MA10 LINE L1 -44 6290 6099 4 699 2777 133 111 19 chr1 15030045 15030587 -182164845 + Lx LINE L1 6012 6603 -51 4 699 749 11 11 0 chr1 15030692 15030782 -182164650 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 4 699 3521 131 0 0 chr1 15030958 15031517 -182163915 - L1VL1 LINE L1 -5669 753 195 4 699 18818 164 37 14 chr1 15031527 15035850 -182159582 - L1VL4 LINE L1 -758 5125 716 4 699 312 368 110 60 chr1 15036547 15036882 -182158550 + MLT1H1 LTR MaLR 169 520 -35 4 699 21 0 0 0 chr1 15037831 15037852 -182157580 + AT_rich Low_complexity Low_complexity 1 21 0 4 699 252 0 0 0 chr1 15037999 15038027 -182157405 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4 699 424 304 67 26 chr1 15038559 15038826 -182156606 - L1MC5 LINE L1 -184 7777 7500 4 699 484 364 30 77 chr1 15039049 15039454 -182155978 - MLT1E1A LTR MaLR 0 680 295 4 699 979 273 146 28 chr1 15039915 15040277 -182155155 + MTD LTR MaLR 1 405 -14 5 699 219 247 110 30 chr1 15040703 15040803 -182154629 - MER5A DNA MER1_type -4 185 78 5 699 248 245 0 0 chr1 15040837 15040886 -182154546 - MER5A DNA MER1_type -110 79 31 5 699 7291 25 0 0 chr1 15041369 15042191 -182153241 - RLTR13B2 LTR ERVK 0 822 1 5 699 28 0 0 0 chr1 15042265 15042293 -182153139 + AT_rich Low_complexity Low_complexity 1 28 0 5 699 1265 28 0 0 chr1 15042296 15042441 -182152991 + B1_Mm SINE Alu 2 146 -1 5 699 1338 102 0 21 chr1 15042814 15043004 -182152428 - B2_Mm2 SINE B2 -9 186 1 5 699 232 260 12 61 chr1 15043100 15043182 -182152250 + MLT1C LTR MaLR 373 450 -17 5 699 291 323 36 0 chr1 15043394 15043488 -182151944 + PB1D10 SINE Alu 6 105 -12 5 699 229 200 69 28 chr1 15043679 15043751 -182151681 + MADE2 DNA Mariner 1 75 -5 5 699 228 242 59 29 chr1 15044694 15044796 -182150636 - L1MB1 LINE L1 -25 6164 6060 5 699 277 237 38 38 chr1 15044804 15044883 -182150549 - MLT1A1 LTR MaLR -29 379 301 6 699 300 70 0 0 chr1 15045110 15045153 -182150279 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 699 24 0 0 0 chr1 15045158 15045182 -182150250 + AT_rich Low_complexity Low_complexity 1 24 0 6 699 1645 302 119 21 chr1 15045945 15046736 -182148696 - Lx9 LINE L1 -311 7333 6466 6 699 596 312 110 27 chr1 15048324 15048656 -182146776 + ORR1E LTR MaLR 1 379 0 6 699 1113 8 0 0 chr1 15048839 15048965 -182146467 + (GGGAGA)n Simple_repeat Simple_repeat 5 130 0 6 699 1971 143 19 0 chr1 15050717 15051032 -182144400 - ORR1A2 LTR MaLR 0 327 7 6 699 2975 153 33 3 chr1 15051222 15051791 -182143641 - ORR1A2-int LTR MaLR -662 1301 716 6 699 700 220 6 107 chr1 15051749 15051927 -182143505 - MT2B LTR ERVL -314 287 128 6 699 1040 138 34 19 chr1 15051851 15052064 -182143368 - ORR1A2-int LTR MaLR -1188 604 385 6 699 1158 193 70 11 chr1 15052065 15052338 -182143094 + L1VL2 LINE L1 106 394 -5941 6 699 5361 126 94 13 chr1 15052338 15052538 -182142894 - L1_Mus4 LINE L1 -4 6632 6432 6 699 1925 197 76 86 chr1 15052538 15053076 -182142356 - RMER16 LTR ERVK 0 533 1 7 699 5361 121 66 11 chr1 15053076 15054060 -182141372 - L1_Mus4 LINE L1 -205 6431 5362 6 699 1822 123 31 62 chr1 15054053 15054409 -182141023 + L1_Mus4 LINE L1 5064 5408 -475 6 699 5655 111 26 3 chr1 15054411 15056100 -182139332 + L1VL2 LINE L1 95 1826 -1789 7 699 222 284 30 0 chr1 15056243 15056310 -182139122 - PB1D10 SINE Alu -22 95 27 7 699 26 82 0 0 chr1 15057774 15057835 -182137597 + AT_rich Low_complexity Low_complexity 1 61 0 7 699 7753 154 13 0 chr1 15058038 15059854 -182135578 + Lx LINE L1 4427 6271 -383 7 699 396 0 0 0 chr1 15059854 15059898 -182135534 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 7 699 681 295 12 16 chr1 15059898 15059927 -182135505 + Lx2A LINE L1 6617 6645 -363 7 699 1654 237 67 0 chr1 15060033 15060404 -182135028 - MTD LTR MaLR -13 406 11 7 699 206 377 98 39 chr1 15060621 15060875 -182134557 + L2a LINE L2 3016 3284 -142 7 699 30 0 0 0 chr1 15060875 15060905 -182134527 + AT_rich Low_complexity Low_complexity 1 30 0 7 699 464 276 235 0 chr1 15060905 15061075 -182134357 - B3 SINE B2 -6 210 1 8 699 615 322 68 15 chr1 15061727 15061992 -182133440 + B4A SINE B4 8 286 -6 8 699 303 197 48 32 chr1 15062071 15062134 -182133298 - HAL1-3A_ME LINE L1 -820 2038 1975 8 699 323 228 11 0 chr1 15062134 15062226 -182133206 + (TATG)n Simple_repeat Simple_repeat 4 96 0 8 699 1096 90 0 0 chr1 15062525 15062669 -182132763 + B1_Mus2 SINE Alu 3 146 -1 8 699 2634 86 105 0 chr1 15062687 15063058 -182132374 + RLTR10A LTR ERVK 2 411 0 8 699 1863 103 21 75 chr1 15063060 15063449 -182131983 + IAP-d-int LTR ERVK 57 605 -1382 8 699 671 200 40 0 chr1 15063443 15063593 -182131839 + IAP-d-int LTR ERVK 347 502 -6040 8 699 2928 66 149 2 chr1 15063593 15064021 -182131411 + IAP-d-int LTR ERVK 5006 5496 -1046 8 699 2257 49 187 0 chr1 15064020 15064368 -182131064 + IAP-d-int LTR ERVK 5605 6017 -525 8 699 4149 94 69 14 chr1 15064382 15065050 -182130382 + RLTR10-int LTR ERVK 1282 1986 -1 8 699 2785 75 96 0 chr1 15065050 15065424 -182130008 + RLTR10A LTR ERVK 1 410 -1 8 699 1127 69 14 0 chr1 15065626 15065770 -182129662 - B1_Mm SINE Alu 0 147 2 8 699 316 276 56 24 chr1 15065906 15066032 -182129400 - ORR1E LTR MaLR -6 353 224 8 699 895 264 71 122 chr1 15066524 15066917 -182128515 - MTE2a LTR MaLR -2 377 5 8 699 336 309 45 53 chr1 15067230 15067363 -182128069 - L2c LINE L2 -4 3383 3252 9 699 4064 48 0 0 chr1 15067374 15067891 -182127541 + L1Md_F2 LINE L1 6043 6559 -23 9 699 270 0 0 0 chr1 15067891 15067921 -182127511 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 699 903 281 56 11 chr1 15068163 15068540 -182126892 + L1_Mur3 LINE L1 136 529 -7199 9 699 270 0 0 0 chr1 15068558 15068588 -182126844 + (A)n Simple_repeat Simple_repeat 1 30 0 9 699 1344 181 27 0 chr1 15068588 15068886 -182126546 + L1_Mur3 LINE L1 859 1164 -6564 9 699 2539 62 11 19 chr1 15068912 15069249 -182126183 + L1_Mus2 LINE L1 5945 6285 -281 9 699 7056 96 22 9 chr1 15069249 15070259 -182125173 - RLTR13D5 LTR ERVK 0 1023 1 9 699 2539 62 11 19 chr1 15070259 15070285 -182125147 + L1_Mus2 LINE L1 6286 6305 -261 9 699 2433 59 0 0 chr1 15070285 15070606 -182124826 + RLTR10 LTR ERVK 1 321 -69 9 699 237 146 0 0 chr1 15070622 15070677 -182124755 + RLTR10 LTR ERVK 259 313 -77 9 699 833 116 38 19 chr1 15070678 15070836 -182124596 + RLTR10 LTR ERVK 227 387 -3 9 699 13378 30 71 60 chr1 15070851 15072773 -182122659 + RLTR10-int LTR ERVK 41 1984 -3 9 699 2433 59 0 0 chr1 15072775 15073096 -182122336 + RLTR10 LTR ERVK 1 321 -69 9 699 237 146 0 0 chr1 15073112 15073167 -182122265 + RLTR10 LTR ERVK 259 313 -77 1 87 905 109 38 19 chr1 15073168 15073327 -182122105 + RLTR10 LTR ERVK 227 388 -2 1 700 2029 66 0 0 chr1 15073329 15073588 -182121844 + L1_Mus2 LINE L1 6300 6558 -9 9 700 33982 52 0 4 chr1 15073588 15079461 -182115971 + L1Md_T LINE L1 1 5589 -297 1 700 8453 32 0 0 chr1 15079461 15080484 -182114948 + L1Md_T LINE L1 5590 6585 0 1 700 21 0 0 0 chr1 15080604 15080625 -182114807 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 246 62 0 0 chr1 15080681 15080713 -182114719 + (A)n Simple_repeat Simple_repeat 1 32 0 1 700 5522 183 49 19 chr1 15080752 15082154 -182113278 + L1_Mur3 LINE L1 1151 2593 -3287 9 700 3836 165 46 6 chr1 15082155 15082958 -182112474 + L1_Mur3 LINE L1 3757 4591 -1289 9 700 4527 238 79 5 chr1 15082955 15084080 -182111352 + Lx6 LINE L1 6194 7401 -59 1 700 201 229 0 0 chr1 15084157 15084205 -182111227 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 1 700 570 29 0 0 chr1 15084774 15084842 -182110590 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 1 700 588 234 19 65 chr1 15085177 15085332 -182110100 + B3 SINE B2 12 159 -57 1 700 380 357 71 0 chr1 15085499 15085639 -182109793 + ID_B1 SINE B4 2 151 -73 1 700 211 226 20 0 chr1 15085644 15085746 -182109686 + (CA)n Simple_repeat Simple_repeat 2 105 0 1 700 29600 146 18 33 chr1 15085753 15086819 -182108613 + L1Md_F2 LINE L1 207 1256 -5468 1 700 288 0 0 0 chr1 15086819 15086851 -182108581 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 700 29600 82 11 1 chr1 15086851 15087646 -182107786 + L1Md_F2 LINE L1 1257 2069 -3814 1 700 180 0 0 0 chr1 15087646 15087666 -182107766 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 700 29600 82 11 1 chr1 15087666 15089277 -182106155 + L1Md_F2 LINE L1 2070 3698 -2185 1 700 4367 60 4 2 chr1 15089277 15089832 -182105600 + L1Md_F2 LINE L1 6014 6569 -13 1 700 29600 82 11 1 chr1 15089832 15091709 -182103723 + L1Md_F2 LINE L1 3699 5584 -299 1 700 7261 66 29 9 chr1 15091709 15092683 -182102749 + L1Md_F2 LINE L1 5587 6579 -3 1 700 482 303 6 6 chr1 15092708 15092887 -182102545 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 700 369 224 0 0 chr1 15092899 15093055 -182102377 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 700 210 265 0 0 chr1 15093075 15093192 -182102240 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 700 467 196 7 0 chr1 15093316 15093454 -182101978 + (CA)n Simple_repeat Simple_repeat 2 140 0 1 700 440 238 6 0 chr1 15093484 15093652 -182101780 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 700 254 169 0 15 chr1 15093704 15093770 -182101662 + (CATA)n Simple_repeat Simple_repeat 1 65 0 1 700 398 224 3 11 chr1 15093807 15094095 -182101337 + (CA)n Simple_repeat Simple_repeat 1 285 0 1 700 253 296 14 0 chr1 15094430 15094501 -182100931 + ID4_ SINE ID 3 74 -9 1 700 3059 50 13 0 chr1 15097215 15097598 -182097834 + RLTR10 LTR ERVK 1 388 -2 1 700 230 0 0 32 chr1 15098543 15098574 -182096858 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 700 21 0 0 0 chr1 15098771 15098792 -182096640 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 21 36 0 0 chr1 15098941 15098969 -182096463 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 5924 48 4 2 chr1 15098979 15100027 -182095405 + L1Md_F2 LINE L1 5112 6161 -421 1 700 261 309 148 4 chr1 15100069 15100306 -182095126 - L1M3 LINE L1 -469 5720 5450 1 700 593 195 64 12 chr1 15100447 15100609 -182094823 - B3 SINE B2 -18 175 2 1 700 353 290 44 99 chr1 15100609 15100881 -182094551 + L1MA10 LINE L1 6026 6282 -52 1 700 21 36 0 0 chr1 15100920 15100948 -182094484 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 1165 296 73 57 chr1 15102106 15102596 -182092836 - MT2A LTR ERVL -1 532 35 1 700 21308 134 14 3 chr1 15102600 15106860 -182088572 + L1_Mus3 LINE L1 2077 6376 -262 1 700 396 0 0 0 chr1 15106860 15106904 -182088528 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 700 6848 101 17 1 chr1 15106904 15107152 -182088280 + L1_Mus3 LINE L1 6377 6636 -2 1 700 261 276 0 0 chr1 15107623 15107681 -182087751 + RCHARR1 DNA MER1_type 692 749 -225 1 700 2470 252 16 34 chr1 15107715 15108413 -182087019 + RCHARR1 DNA MER1_type 290 974 0 1 700 251 273 46 128 chr1 15108755 15108954 -182086478 + RMER17D LTR ERVK 128 299 -590 1 700 222 62 0 0 chr1 15108954 15108986 -182086446 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 700 251 273 46 128 chr1 15108986 15109067 -182086365 + RMER17D LTR ERVK 300 384 -505 1 700 337 303 165 19 chr1 15109426 15109638 -182085794 - MLT1D LTR MaLR -2 503 261 1 700 361 235 31 0 chr1 15110538 15110636 -182084796 - L1MB1 LINE L1 -4 6164 6064 1 700 372 94 0 0 chr1 15112007 15112060 -182083372 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 700 417 285 16 13 chr1 15112116 15112297 -182083135 + L1M5 LINE L1 5481 5662 -462 1 700 279 0 0 0 chr1 15113030 15113061 -182082371 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 700 329 220 28 21 chr1 15113168 15113312 -182082120 + (TATATG)n Simple_repeat Simple_repeat 4 148 0 1 700 197 0 71 0 chr1 15114698 15114726 -182080706 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1 700 798 221 109 29 chr1 15115456 15115655 -182079777 - MTC LTR MaLR 0 421 205 1 700 279 0 0 0 chr1 15115655 15115686 -182079746 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 700 2777 124 5 16 chr1 15115841 15116282 -182079150 - Lx4A LINE L1 -107 6951 6516 1 700 1425 137 13 0 chr1 15116277 15116504 -182078928 + Lx4B LINE L1 6281 6510 -548 1 700 990 195 73 5 chr1 15116504 15116710 -182078722 - MTC LTR MaLR -201 220 1 1 700 1244 61 18 3 chr1 15117486 15117813 -182077619 + (TTCC)n Simple_repeat Simple_repeat 1 332 0 1 700 282 403 62 8 chr1 15117839 15117969 -182077463 + L2b LINE L2 3226 3362 -13 1 700 346 309 0 0 chr1 15118096 15118193 -182077239 - ID_B1 SINE B4 -1 223 127 1 700 220 330 111 19 chr1 15118193 15118204 -182077228 - B1_Mus1 SINE Alu -1 147 30 1 700 25 31 0 0 chr1 15119756 15119788 -182075644 + AT_rich Low_complexity Low_complexity 1 32 0 1 700 198 0 0 0 chr1 15119854 15119876 -182075556 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 700 621 38 0 0 chr1 15120201 15120281 -182075151 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 700 311 302 69 9 chr1 15121093 15121274 -182074158 + MLT1F1 LTR MaLR 162 385 -184 1 700 318 374 30 25 chr1 15121371 15121574 -182073858 - L1M5 LINE L1 -512 5652 5449 1 700 870 168 0 0 chr1 15121716 15121859 -182073573 + B1_Mur4 SINE Alu 1 143 -7 1 700 745 309 65 45 chr1 15121854 15122145 -182073287 + MLT1C LTR MaLR 171 467 0 1 700 742 313 48 11 chr1 15122574 15122807 -182072625 - MLT1A1 LTR MaLR -31 377 135 1 700 572 321 46 38 chr1 15122807 15123167 -182072265 + ORR1E LTR MaLR 1 379 0 1 700 325 339 32 16 chr1 15123171 15123294 -182072138 - MLT1A1 LTR MaLR -273 135 11 1 700 199 190 98 49 chr1 15123776 15123837 -182071595 - L3 LINE CR1 -3295 1194 1131 1 700 365 361 0 25 chr1 15123856 15123978 -182071454 - MER63A DNA AcHobo -91 119 1 1 700 1233 101 29 5 chr1 15124256 15124449 -182070983 - B2_Mm2 SINE B2 0 216 10 1 700 189 139 0 0 chr1 15125397 15125420 -182070012 + (A)n Simple_repeat Simple_repeat 1 23 0 1 700 327 49 0 0 chr1 15125420 15125461 -182069971 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 1 700 189 139 0 0 chr1 15125461 15125473 -182069959 + (A)n Simple_repeat Simple_repeat 1 12 0 1 700 443 231 6 28 chr1 15125843 15126021 -182069411 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 700 333 330 0 35 chr1 15126021 15126137 -182069295 - RMER12 LTR ERVK -471 851 740 1 700 342 80 0 0 chr1 15127120 15127170 -182068262 + (CACTG)n Simple_repeat Simple_repeat 1 50 0 1 700 326 252 124 18 chr1 15127617 15127753 -182067679 - B1_Mus1 SINE Alu -1 148 3 1 700 186 43 0 0 chr1 15128188 15128211 -182067221 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 700 770 81 8 0 chr1 15129137 15129261 -182066171 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 1 700 212 180 79 32 chr1 15129721 15129784 -182065648 + L2 LINE L2 2818 2883 -536 1 700 441 0 0 0 chr1 15130361 15130410 -182065022 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 700 659 280 48 105 chr1 15130417 15130732 -182064700 + MTEb LTR MaLR 83 379 0 1 700 658 349 20 0 chr1 15130908 15131106 -182064326 - B3 SINE B2 -7 209 8 1 700 408 40 0 0 chr1 15131442 15131492 -182063940 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 700 528 57 0 0 chr1 15131663 15131672 -182063760 + (TTC)n Simple_repeat Simple_repeat 2 10 0 1 700 1235 89 0 6 chr1 15131672 15131852 -182063580 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 700 528 57 0 0 chr1 15131852 15131912 -182063520 + (TTC)n Simple_repeat Simple_repeat 2 61 0 1 700 794 306 6 0 chr1 15131924 15132107 -182063325 - ID_B1 SINE B4 -36 188 5 1 700 239 292 15 0 chr1 15132163 15132228 -182063204 - MER20B DNA MER1_type -673 110 45 1 700 519 341 0 15 chr1 15132258 15132395 -182063037 + ID_B1 SINE B4 70 204 -20 1 700 567 335 4 79 chr1 15133002 15133242 -182062190 - ID_B1 SINE B4 -1 223 2 1 700 3298 152 16 72 chr1 15133261 15133898 -182061534 + MT2B LTR ERVL 1 601 0 1 700 3869 114 24 2 chr1 15134460 15135081 -182060351 - L1_Mm LINE L1 -504 5379 4745 1 700 1395 226 50 19 chr1 15135088 15135466 -182059966 - Lx6 LINE L1 -1329 6131 5742 1 700 822 172 12 85 chr1 15135468 15135633 -182059799 - ORR1A4 LTR MaLR -169 160 8 1 700 2517 185 96 11 chr1 15135633 15136277 -182059155 + L1_Mur3 LINE L1 2468 3166 -2714 1 700 964 239 56 30 chr1 15136335 15136797 -182058635 - Lx6 LINE L1 -5851 1235 821 1 700 443 63 0 16 chr1 15137130 15137194 -182058238 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 700 24 0 0 0 chr1 15137333 15137357 -182058075 + AT_rich Low_complexity Low_complexity 1 24 0 1 700 280 403 84 8 chr1 15137538 15137788 -182057644 - MamGypLTR1c LTR Gypsy -309 494 226 1 700 1213 61 0 0 chr1 15138083 15138230 -182057202 - B1_Mus1 SINE Alu 0 148 2 1 700 186 346 25 13 chr1 15138245 15138324 -182057108 - MIRb SINE MIR -169 99 20 1 700 245 209 15 0 chr1 15139209 15139276 -182056156 + (TATG)n Simple_repeat Simple_repeat 4 71 0 1 700 317 24 0 23 chr1 15139277 15139320 -182056112 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 700 243 0 0 0 chr1 15139972 15139999 -182055433 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 700 388 300 80 9 chr1 15140563 15140775 -182054657 - L1MC4a LINE L1 -12 7870 7644 1 700 313 262 0 0 chr1 15140784 15140864 -182054568 - L1MC4a LINE L1 -319 7466 7387 1 700 268 207 0 79 chr1 15141397 15141460 -182053972 - tRNA-Ala-GCY_ tRNA tRNA -14 61 4 1 700 451 296 83 16 chr1 15141442 15141634 -182053798 - B4A SINE B4 -87 205 1 1 700 465 326 86 36 chr1 15141687 15141967 -182053465 + MER44A DNA MER2_type 4 297 -42 1 700 1228 116 5 69 chr1 15142332 15142506 -182052926 - B2_Mm1t SINE B2 -2 191 30 2 700 2064 113 143 30 chr1 15142506 15142870 -182052562 + RLTR44A LTR ERVK 1 405 0 2 700 1228 116 5 69 chr1 15142870 15142899 -182052533 - B2_Mm1t SINE B2 -164 29 1 2 700 234 0 0 0 chr1 15143150 15143176 -182052256 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 700 610 276 0 7 chr1 15144861 15144996 -182050436 - ID_B1 SINE B4 -7 217 84 2 700 203 364 93 0 chr1 15145286 15145415 -182050017 + MIR SINE MIR 12 152 -110 2 700 663 330 91 13 chr1 15145417 15145743 -182049689 - ORR1E LTR MaLR 0 379 12 2 700 327 233 27 14 chr1 15146120 15146194 -182049238 + MER81 DNA AcHobo 8 82 -32 2 700 856 77 0 0 chr1 15146194 15146324 -182049108 + L1VL4 LINE L1 765 894 -5408 2 700 207 0 0 0 chr1 15146324 15146347 -182049085 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 700 19507 116 12 7 chr1 15146349 15150257 -182045175 + L1_Mus2 LINE L1 2643 6566 0 2 700 2643 201 53 30 chr1 15150270 15150926 -182044506 + MYSERV6-int LTR ERVK 8287 8957 -2 2 700 413 289 97 53 chr1 15150928 15151228 -182044204 + RLTR15 LTR ERVK 1 313 -46 2 700 1431 58 21 0 chr1 15151469 15151658 -182043774 + L1_Mus1 LINE L1 6375 6567 0 2 700 1289 98 11 16 chr1 15151946 15152132 -182043300 + B2_Mm2 SINE B2 2 186 -9 2 700 3148 38 10 13 chr1 15152173 15152570 -182042862 + MTA_Mm LTR MaLR 1 396 0 2 700 7895 78 13 4 chr1 15152570 15153654 -182041778 + MTA_Mm-int LTR MaLR 1 1094 -4 2 700 3111 56 2 10 chr1 15153654 15154050 -182041382 + MTA_Mm LTR MaLR 1 396 0 2 700 614 186 0 0 chr1 15154261 15154374 -182041058 + B1_Mus1 SINE Alu 31 143 -5 2 700 609 277 78 119 chr1 15154374 15155708 -182039724 + L1_Mur3 LINE L1 3699 4977 -903 2 700 1814 144 150 11 chr1 15155714 15155874 -182039558 - RLTR25B LTR ERVK 0 1103 920 2 700 594 0 0 0 chr1 15155874 15155940 -182039492 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 700 1814 144 150 11 chr1 15155940 15156138 -182039294 - RLTR25B LTR ERVK -184 919 696 2 700 2912 201 32 19 chr1 15156137 15156700 -182038732 - RLTR25B LTR ERVK -458 570 1 2 700 891 311 66 25 chr1 15156701 15157289 -182038143 + Lx8 LINE L1 4951 5562 -285 2 700 931 304 7 23 chr1 15157693 15158003 -182037429 + Lx8 LINE L1 6222 6526 -947 2 700 26 50 0 0 chr1 15158067 15158107 -182037325 + AT_rich Low_complexity Low_complexity 1 40 0 2 700 27 29 0 0 chr1 15161426 15161460 -182033972 + AT_rich Low_complexity Low_complexity 1 34 0 2 700 540 241 184 17 chr1 15161489 15161836 -182033596 - L1MB4 LINE L1 -55 6125 5721 2 700 301 24 0 0 chr1 15161836 15161877 -182033555 + RLTR44D LTR ERVK 1 41 -445 2 700 859 104 0 29 chr1 15161877 15162016 -182033416 + RLTR44-int LTR ERVK 1198 1332 -1480 2 700 484 272 0 30 chr1 15162151 15162318 -182033114 + IAPEz-int LTR ERVK 3511 3672 -2809 2 700 4155 74 9 2 chr1 15162343 15162908 -182032524 + RLTR44-int LTR ERVK 2244 2812 0 2 700 2679 99 34 90 chr1 15162908 15163406 -182032026 + RLTR44C LTR ERVK 1 470 -32 2 700 363 290 61 43 chr1 15163417 15163648 -182031784 - L1MB4 LINE L1 -490 5693 5459 2 700 848 149 23 0 chr1 15163667 15163841 -182031591 + CT-rich Low_complexity Low_complexity 2 179 0 2 700 1002 113 6 17 chr1 15163843 15164023 -182031409 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 2 700 312 91 0 0 chr1 15164026 15164070 -182031362 + (TCCCC)n Simple_repeat Simple_repeat 1 44 0 2 700 395 305 71 19 chr1 15164252 15164406 -182031026 - L1M5 LINE L1 -727 5437 5276 2 700 1002 249 0 10 chr1 15164437 15164632 -182030800 - B3 SINE B2 -7 209 17 2 700 484 293 145 0 chr1 15164770 15165012 -182030420 - L1MB4 LINE L1 -1078 5062 4786 2 700 743 265 21 38 chr1 15165474 15165680 -182029752 - B3A SINE B2 -10 185 1 2 700 380 332 44 144 chr1 15165707 15165936 -182029496 - B4A SINE B4 -83 209 4 2 700 290 296 105 70 chr1 15166634 15166863 -182028569 - RMER20B LTR ERVK -294 333 97 2 700 244 127 15 31 chr1 15167543 15167608 -182027824 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 2 700 270 0 0 0 chr1 15167623 15167653 -182027779 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 700 2806 57 0 0 chr1 15167713 15168085 -182027347 - L1_Mm LINE L1 -673 5210 4839 2 700 2737 28 3 3 chr1 15168085 15168414 -182027018 + L1Md_F3 LINE L1 6254 6582 -2 2 700 634 185 127 0 chr1 15168509 15168682 -182026750 - Lx9 LINE L1 -1 7643 7449 2 700 284 279 0 8 chr1 15169430 15169553 -182025879 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 700 207 0 0 0 chr1 15169548 15169571 -182025861 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 2 700 365 291 114 44 chr1 15170360 15170633 -182024799 - L1ME3B LINE L1 -184 6056 5765 2 700 318 26 0 0 chr1 15170675 15170714 -182024718 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 700 339 85 0 0 chr1 15170714 15170760 -182024672 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 700 18304 200 93 26 chr1 15170858 15173832 -182021600 - Lx5 LINE L1 -4 7046 3968 2 700 2875 58 58 3 chr1 15173832 15174211 -182021221 - MTB LTR MaLR 0 400 1 2 700 18304 178 75 24 chr1 15174211 15176019 -182019413 - Lx5 LINE L1 -1910 3967 2075 2 700 219 69 0 0 chr1 15176019 15176048 -182019384 + (ATG)n Simple_repeat Simple_repeat 1 29 0 2 700 18304 192 71 18 chr1 15176048 15177011 -182018421 - Lx5 LINE L1 -3803 2074 920 2 700 280 222 303 0 chr1 15177969 15178068 -182017364 + B3A SINE B2 1 129 -69 2 700 240 310 71 12 chr1 15178555 15178640 -182016792 - MamGypLTR2 LTR Gypsy -1053 136 47 2 700 258 282 58 23 chr1 15178735 15178822 -182016610 + L3 LINE CR1 4140 4229 -260 2 700 252 0 0 0 chr1 15178852 15178880 -182016552 + (A)n Simple_repeat Simple_repeat 1 28 0 2 700 1834 192 88 8 chr1 15178948 15179336 -182016096 + MTC LTR MaLR 3 421 0 2 700 366 301 144 0 chr1 15179604 15179777 -182015655 + MER2 DNA MER2_type 23 220 -125 2 700 12601 97 4 5 chr1 15179911 15182602 -182012830 - L1_Mus1 LINE L1 -11 6556 3866 2 700 26 30 0 0 chr1 15182720 15182753 -182012679 + AT_rich Low_complexity Low_complexity 1 33 0 2 700 482 327 39 0 chr1 15182896 15183049 -182012383 - RSINE1 SINE B4 -4 161 3 2 700 347 256 58 35 chr1 15183067 15183241 -182012191 - L1MC3 LINE L1 -169 7616 7439 2 700 825 247 98 22 chr1 15183242 15183557 -182011875 + MYSERV6-int LTR ERVK 8620 8958 -1 2 700 1687 225 11 16 chr1 15183560 15183926 -182011506 + RLTR11A LTR ERVK 3 366 -162 2 700 784 102 0 8 chr1 15184088 15184207 -182011225 + RLTR11A LTR ERVK 387 504 -23 2 700 1388 234 75 129 chr1 15184182 15184785 -182010647 + RMER13B LTR ERVK 330 899 -9 2 700 12585 161 13 27 chr1 15185772 15188373 -182007059 + L1_Mus4 LINE L1 3325 5877 -759 2 700 3409 28 5 0 chr1 15188373 15188767 -182006665 + MTA_Mm LTR MaLR 1 396 0 2 700 7067 84 27 7 chr1 15188767 15189503 -182005929 + L1_Mus4 LINE L1 5878 6630 -6 2 700 295 322 110 50 chr1 15190218 15190421 -182005011 + MLT1A LTR MaLR 80 306 -68 2 700 801 199 16 0 chr1 15190770 15190956 -182004476 + Lx2B LINE L1 6062 6250 -750 2 700 3474 160 21 2 chr1 15190957 15191532 -182003900 + Lx2B LINE L1 6411 6996 -4 2 700 278 257 81 96 chr1 15191758 15191956 -182003476 + RMER21B LTR ERV1 597 791 -51 2 700 2574 154 100 38 chr1 15192262 15192783 -182002649 + RMER4B LTR ERVK 33 585 0 2 700 286 117 16 32 chr1 15197170 15197232 -181998200 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 2 700 312 70 0 0 chr1 15197620 15197663 -181997769 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 700 189 107 0 0 chr1 15197751 15197779 -181997653 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 700 351 378 50 48 chr1 15197813 15198249 -181997183 + L1MC4a LINE L1 5484 5920 -1962 2 700 210 71 0 0 chr1 15198551 15198579 -181996853 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 700 805 231 91 11 chr1 15198652 15198915 -181996517 - Lx9 LINE L1 -227 7417 7134 2 700 817 181 109 9 chr1 15198898 15199127 -181996305 + Lx9 LINE L1 7386 7637 -7 2 700 582 275 51 98 chr1 15199195 15199409 -181996023 + B3A SINE B2 9 212 -4 2 700 288 217 0 44 chr1 15199487 15199622 -181995810 + (CATA)n Simple_repeat Simple_repeat 2 130 0 2 700 448 308 0 0 chr1 15199650 15199819 -181995613 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 700 524 279 28 51 chr1 15199875 15200090 -181995342 + Lx6 LINE L1 7220 7429 -31 2 700 194 277 97 40 chr1 15200373 15200497 -181994935 + L3 LINE CR1 3227 3357 -1132 2 700 6937 79 2 9 chr1 15200747 15201255 -181994177 + L1_Mus2 LINE L1 5588 6096 -470 2 700 3077 37 34 3 chr1 15201255 15201639 -181993793 - MTA_Mm LTR MaLR 0 396 1 2 700 8074 64 32 2 chr1 15201639 15202705 -181992727 - MTA_Mm-int LTR MaLR 0 1098 1 2 700 3086 50 31 0 chr1 15202705 15203089 -181992343 - MTA_Mm LTR MaLR 0 396 1 2 700 6937 79 2 9 chr1 15203089 15203564 -181991868 + L1_Mus2 LINE L1 6097 6564 -2 2 700 232 239 11 22 chr1 15204098 15204188 -181991244 + (CATA)n Simple_repeat Simple_repeat 4 92 0 2 701 431 283 45 70 chr1 15204530 15204719 -181990713 - MLT1E2 LTR MaLR -117 563 349 2 701 2104 127 3 3 chr1 15204719 15205059 -181990373 - Lx2 LINE L1 -304 6693 6354 2 701 23 0 0 0 chr1 15205066 15205089 -181990343 + AT_rich Low_complexity Low_complexity 1 23 0 2 701 420 278 72 65 chr1 15205425 15205717 -181989715 - L1MC LINE L1 -1112 5034 4741 2 701 201 195 49 0 chr1 15205726 15205767 -181989665 + CT-rich Low_complexity Low_complexity 1 43 0 2 701 523 282 69 37 chr1 15205767 15205984 -181989448 - ID_B1 SINE B4 0 224 1 2 701 539 245 76 68 chr1 15205988 15206343 -181989089 - L1MC LINE L1 -1668 4478 4121 2 701 258 297 39 10 chr1 15206646 15206748 -181988684 - HERV16-int LTR ERVL -2260 2736 2632 2 701 368 239 0 0 chr1 15207073 15207161 -181988271 + Ricksha_0 DNA MuDR 9 96 -1637 2 701 564 297 74 60 chr1 15207269 15207702 -181987730 + Ricksha_0 DNA MuDR 334 772 -961 2 701 281 302 59 44 chr1 15207780 15207915 -181987517 - RMER15 LTR ERVL -2 573 437 2 701 230 276 50 132 chr1 15208053 15208174 -181987258 + MTEb LTR MaLR 268 378 -1 2 701 2861 183 77 19 chr1 15209597 15210182 -181985250 - RLTR26 LTR ERVK 0 642 24 2 701 6673 153 40 10 chr1 15210238 15211494 -181983938 - Lx2B LINE L1 0 7000 5707 2 701 9130 164 35 2 chr1 15211499 15213235 -181982197 - L1_Mur2 LINE L1 -2 5875 4083 2 701 315 269 43 0 chr1 15214159 15214252 -181981180 + L1M2 LINE L1 4232 4328 -1815 2 701 580 265 103 41 chr1 15214770 15214834 -181980598 + B4 SINE B4 5 69 -223 2 701 180 0 0 0 chr1 15214834 15214854 -181980578 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 701 580 265 103 41 chr1 15214854 15215060 -181980372 + B4 SINE B4 70 292 0 2 701 22 0 0 0 chr1 15215302 15215324 -181980108 + AT_rich Low_complexity Low_complexity 1 22 0 2 701 5022 218 66 25 chr1 15215576 15217104 -181978328 + L1_Mur3 LINE L1 17 1489 -4391 2 701 207 0 0 0 chr1 15217104 15217127 -181978305 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2 701 5022 183 98 79 chr1 15217127 15217628 -181977804 + L1_Mur3 LINE L1 1490 2051 -3829 2 701 414 0 0 0 chr1 15217628 15217674 -181977758 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 701 5022 183 98 79 chr1 15217674 15218528 -181976904 + L1_Mur3 LINE L1 2052 2833 -3047 2 701 34606 13 1 4 chr1 15218526 15223511 -181971921 + L1Md_A LINE L1 643 5586 -297 2 701 8918 20 0 0 chr1 15223511 15224507 -181970925 + L1Md_A LINE L1 5587 6582 0 2 701 312 203 0 0 chr1 15224508 15224572 -181970860 + L1_Mur3 LINE L1 2821 2884 -2996 2 701 2362 217 48 85 chr1 15224575 15225432 -181970000 + Lx3_Mus LINE L1 4 1152 -5832 2 701 1056 115 0 20 chr1 15225432 15225571 -181969861 + B1_Mus1 SINE Alu 1 139 -9 3 701 201 39 0 0 chr1 15225571 15225597 -181969835 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 701 1056 115 0 20 chr1 15225597 15225608 -181969824 + B1_Mus1 SINE Alu 140 148 0 3 701 32171 95 15 16 chr1 15225608 15230371 -181965061 + Lx3_Mus LINE L1 1153 5911 -1098 2 701 354 45 0 0 chr1 15230371 15230415 -181965017 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 701 8995 95 62 16 chr1 15230415 15231460 -181963972 + Lx3_Mus LINE L1 5912 7008 -1 2 701 1154 259 27 75 chr1 15231498 15231870 -181963562 + Lx5 LINE L1 6694 7047 -3 3 701 1347 169 0 98 chr1 15231891 15232219 -181963213 + L1_Mur3 LINE L1 3418 3713 -2167 3 701 4831 53 3 3 chr1 15232323 15232910 -181962522 + LTRIS_Mus LTR ERV1 1 587 0 3 701 401 356 58 51 chr1 15233103 15233360 -181962072 + B4A SINE B4 14 272 -20 3 701 19042 60 8 1 chr1 15234444 15237534 -181957898 - L1Md_F2 LINE L1 -10 6572 3469 3 701 227 169 85 0 chr1 15237548 15237607 -181957825 + B3 SINE B2 152 215 -1 3 701 370 217 89 46 chr1 15238149 15238330 -181957102 + L1M5 LINE L1 5286 5478 -762 3 701 319 245 36 54 chr1 15238703 15238815 -181956617 + MTEb LTR MaLR 270 379 0 3 701 738 300 26 71 chr1 15238930 15239307 -181956125 + ORR1E LTR MaLR 1 370 0 3 701 291 319 33 80 chr1 15239635 15239785 -181955647 + L1M5 LINE L1 5500 5642 -598 3 701 256 193 313 14 chr1 15239798 15239945 -181955487 + MER53 DNA hAT 2 192 -1 3 701 283 279 121 7 chr1 15240874 15241015 -181954417 + MER112 DNA MER1_type 90 246 -15 3 701 1339 101 21 5 chr1 15241024 15241214 -181954218 + B2_Mm2 SINE B2 2 194 -1 3 701 1002 224 50 4 chr1 15241438 15241676 -181953756 - MTD LTR MaLR -5 414 166 3 701 473 0 18 0 chr1 15241804 15241861 -181953571 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 701 575 288 11 11 chr1 15242513 15242687 -181952745 - MTD LTR MaLR -257 162 3 3 701 1602 228 39 8 chr1 15242992 15243373 -181952059 - MTD LTR MaLR -19 400 8 3 701 1091 310 30 30 chr1 15243396 15243822 -181951610 - BGLII_B LTR ERVK -11 430 5 3 701 900 85 0 8 chr1 15245432 15245562 -181949870 - L1_Mus2 LINE L1 0 6566 6438 3 701 1139 65 26 0 chr1 15245562 15245716 -181949716 - L1_Mur2 LINE L1 -1398 4479 4322 3 701 927 277 100 80 chr1 15245719 15247199 -181948233 - L1Md_F LINE L1 -5766 753 5 3 701 1645 198 101 47 chr1 15247199 15247713 -181947719 - MYSERV-int LTR ERVK -683 5867 5326 3 701 488 278 45 50 chr1 15247716 15247915 -181947517 - RMER4A LTR ERVK -31 554 251 3 701 38746 30 0 0 chr1 15247983 15254441 -181940991 - L1Md_T LINE L1 0 6585 31 3 701 1779 250 47 50 chr1 15254456 15255309 -181940123 - MYSERV-int LTR ERVK -1777 4773 4208 3 701 249 109 0 0 chr1 15255311 15255357 -181940075 + (T)n Simple_repeat Simple_repeat 1 46 0 3 701 1567 250 7 32 chr1 15255387 15255829 -181939603 - MYSERV6-int LTR ERVK -4540 4419 3989 3 701 545 167 0 12 chr1 15257345 15257515 -181937917 + (TCTCTG)n Simple_repeat Simple_repeat 2 169 0 3 701 550 206 91 69 chr1 15257523 15257755 -181937677 - RLTR20B2 LTR ERVK -298 279 20 3 701 14952 54 0 2 chr1 15260473 15262322 -181933110 + L1Md_F2 LINE L1 3740 5584 -299 3 701 8360 36 2 2 chr1 15262324 15263317 -181932115 + L1Md_F2 LINE L1 5587 6579 -3 3 701 25 0 0 0 chr1 15263433 15263458 -181931974 + AT_rich Low_complexity Low_complexity 1 25 0 3 701 1400 281 59 8 chr1 15263480 15263835 -181931597 - Lx5 LINE L1 -42 7008 6636 3 701 1379 215 185 9 chr1 15263852 15264280 -181931152 - Lx5 LINE L1 -687 6363 5861 3 701 520 252 28 49 chr1 15264315 15264348 -181931084 - B1_Mur3 SINE Alu 0 149 123 3 701 360 0 0 0 chr1 15264348 15264388 -181931044 + (TTA)n Simple_repeat Simple_repeat 2 41 0 3 701 520 252 28 49 chr1 15264388 15264496 -181930936 - B1_Mur3 SINE Alu -27 122 11 3 701 275 236 153 83 chr1 15264772 15264929 -181930503 - MTEa LTR MaLR -7 372 205 3 701 754 208 7 7 chr1 15264953 15265098 -181930334 - MTEa LTR MaLR -234 145 1 3 701 221 83 28 0 chr1 15266446 15266482 -181928950 + (TTTCC)n Simple_repeat Simple_repeat 2 38 0 3 701 870 221 0 6 chr1 15266702 15267054 -181928378 + (ATG)n Simple_repeat Simple_repeat 1 349 0 3 701 457 248 32 19 chr1 15267055 15267106 -181928326 - HAL1-2a_MD LINE L1 -518 2506 2458 3 701 1205 51 6 0 chr1 15267106 15267263 -181928169 + (TGG)n Simple_repeat Simple_repeat 3 160 0 3 701 457 248 32 19 chr1 15267263 15267367 -181928065 - HAL1-2a_MD LINE L1 -567 2457 2349 3 701 513 0 0 0 chr1 15267755 15267812 -181927620 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 701 1246 61 6 22 chr1 15268125 15268308 -181927124 + L1Md_F2 LINE L1 6403 6582 0 3 701 324 323 0 0 chr1 15268511 15268607 -181926825 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 701 414 0 0 0 chr1 15268638 15268684 -181926748 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 701 7512 90 12 57 chr1 15269120 15270465 -181924967 - L1_Mus3 LINE L1 -5 6633 5447 3 701 1129 76 7 0 chr1 15270465 15270610 -181924822 - B1_Mus1 SINE Alu -1 147 2 3 701 3754 113 11 192 chr1 15270610 15270870 -181924562 - L1_Mus3 LINE L1 -437 5446 5195 3 701 9052 105 5 9 chr1 15270876 15273060 -181922372 - L1VL4 LINE L1 -1387 2172 1 3 701 1338 37 0 0 chr1 15274225 15274388 -181921044 + L1Md_A LINE L1 6420 6582 0 3 701 435 38 0 0 chr1 15274559 15274612 -181920820 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 701 5851 73 33 5 chr1 15275382 15276170 -181919262 - Lx3_Mus LINE L1 0 7009 6200 3 701 204 330 68 0 chr1 15281042 15281130 -181914302 - MIR SINE MIR -163 99 6 3 701 323 250 0 0 chr1 15282906 15282978 -181912454 - MER20B DNA MER1_type -48 735 664 3 701 313 392 0 8 chr1 15283225 15283346 -181912086 - MER20B DNA MER1_type -289 494 375 3 701 1201 310 85 13 chr1 15283690 15284289 -181911143 - Lx8 LINE L1 -28 7445 6804 3 701 547 257 101 32 chr1 15284476 15284693 -181910739 - L2c LINE L2 -214 3173 2942 3 701 2129 195 14 7 chr1 15285134 15285552 -181909880 - MTC LTR MaLR 0 421 1 3 701 731 58 24 16 chr1 15286184 15286307 -181909125 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 3 701 864 325 82 64 chr1 15286610 15287109 -181908323 - LTR85c LTR Gypsy? -225 598 91 3 701 193 345 165 11 chr1 15287166 15287257 -181908175 - MIRm SINE MIR -8 268 164 3 701 486 189 220 0 chr1 15288227 15288359 -181907073 - Lx4A LINE L1 -25 7033 6873 3 701 207 0 0 0 chr1 15288883 15288906 -181906526 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 701 206 222 0 0 chr1 15288932 15288968 -181906464 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 701 216 313 46 46 chr1 15289516 15289603 -181905829 + L2a LINE L2 3339 3425 -1 3 701 301 179 155 0 chr1 15290416 15290500 -181904932 + B4A SINE B4 135 231 -61 3 701 104 84 0 0 chr1 15290748 15290999 -181904433 + AT_rich Low_complexity Low_complexity 1 251 0 3 701 261 0 0 0 chr1 15291144 15291173 -181904259 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 701 412 214 0 18 chr1 15291173 15291287 -181904145 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 3 701 245 254 8 0 chr1 15291303 15291433 -181903999 + (CA)n Simple_repeat Simple_repeat 2 132 0 3 701 356 24 0 0 chr1 15291458 15291500 -181903932 + HAL1-3A_ME LINE L1 1976 2017 -841 3 701 187 352 36 27 chr1 15291548 15291659 -181903773 + MIRc SINE MIR 19 130 -138 3 701 1152 50 0 18 chr1 15292749 15292912 -181902520 + (GGAGAA)n Simple_repeat Simple_repeat 4 163 0 3 701 1044 182 2 2 chr1 15293077 15293333 -181902099 + GA-rich Low_complexity Low_complexity 1 256 0 3 701 295 256 8 8 chr1 15293333 15293381 -181902051 + polypurine Low_complexity Low_complexity 78 125 0 3 701 230 56 0 27 chr1 15293461 15293498 -181901934 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 701 4988 65 0 1 chr1 15293652 15294312 -181901120 - L1_Mus2 LINE L1 -144 6422 5764 3 701 518 101 8 30 chr1 15294306 15294404 -181901028 + L1Md_F2 LINE L1 5714 5821 -419 3 701 2413 92 85 16 chr1 15294595 15294972 -181900460 + MTB_Mm LTR MaLR 5 407 0 3 701 468 288 35 21 chr1 15295692 15295834 -181899598 + B3 SINE B2 2 145 -71 3 701 506 99 11 0 chr1 15295836 15295927 -181899505 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 701 463 125 32 48 chr1 15296583 15296709 -181898723 + Lx9 LINE L1 7520 7643 -1 3 701 223 333 36 60 chr1 15299064 15299147 -181896285 + BC1_Mm scRNA scRNA 1 81 -71 3 701 1532 252 18 40 chr1 15300185 15300565 -181894867 + MTD LTR MaLR 48 419 0 3 701 307 127 16 16 chr1 15301144 15301208 -181894224 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 701 198 143 0 0 chr1 15304253 15304288 -181891144 + (T)n Simple_repeat Simple_repeat 1 35 0 3 701 23 78 0 0 chr1 15304592 15304643 -181890789 + AT_rich Low_complexity Low_complexity 1 51 0 3 701 266 349 72 0 chr1 15305660 15305743 -181889689 + B4A SINE B4 86 174 -118 3 701 369 329 18 24 chr1 15306334 15306499 -181888933 + MamRep4096 DNA hAT? 238 401 -25 3 701 290 253 10 119 chr1 15307265 15307467 -181887965 + CT-rich Low_complexity Low_complexity 1 180 0 3 701 254 369 70 45 chr1 15307620 15307776 -181887656 - MER106B DNA MER1_type -897 162 3 3 701 25 0 0 0 chr1 15308716 15308741 -181886691 + AT_rich Low_complexity Low_complexity 1 25 0 3 701 226 311 33 0 chr1 15309144 15309205 -181886227 - BC1_Mm scRNA scRNA -76 76 14 3 701 251 238 48 0 chr1 15309152 15309215 -181886217 - B4 SINE B4 -224 68 3 3 701 228 149 0 0 chr1 15309273 15309320 -181886112 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 701 242 125 21 0 chr1 15310502 15310550 -181884882 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 3 701 207 69 0 0 chr1 15313309 15313338 -181882094 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 701 271 309 118 20 chr1 15314361 15314513 -181880919 - MER58A DNA MER1_type 0 224 58 3 701 244 256 118 32 chr1 15316140 15316233 -181879199 - MER70B LTR ERVL -211 367 267 3 701 276 301 83 12 chr1 15316273 15316357 -181879075 - MER70B LTR ERVL -471 107 18 3 701 264 256 41 0 chr1 15316764 15316885 -181878547 + (CAGAGA)n Simple_repeat Simple_repeat 5 130 0 3 701 756 229 30 13 chr1 15317508 15317697 -181877735 + B3A SINE B2 1 184 -11 3 701 21 57 0 0 chr1 15317965 15318000 -181877432 + AT_rich Low_complexity Low_complexity 1 35 0 3 701 482 298 45 8 chr1 15318440 15318572 -181876860 + ID_B1 SINE B4 81 217 -7 3 701 209 108 0 26 chr1 15318574 15318612 -181876820 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 3 701 706 303 84 36 chr1 15318805 15319079 -181876353 - B4A SINE B4 -3 289 3 4 701 1542 268 135 5 chr1 15319277 15319894 -181875538 + Lx8 LINE L1 6764 7460 -13 4 701 204 40 0 0 chr1 15320430 15320455 -181874977 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 701 181 335 90 32 chr1 15321259 15321447 -181873985 - MIRb SINE MIR -29 239 41 4 701 1739 169 105 0 chr1 15322206 15322538 -181872894 - ORR1B2 LTR MaLR 0 367 1 4 701 300 188 0 0 chr1 15324311 15324375 -181871057 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 701 318 50 0 0 chr1 15324392 15324432 -181871000 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 701 456 19 0 0 chr1 15325415 15325468 -181869964 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 701 458 316 13 13 chr1 15325754 15325908 -181869524 - RSINE1 SINE B4 -7 158 5 4 701 264 299 0 22 chr1 15325910 15325999 -181869433 + MLT1I LTR MaLR 325 411 0 4 701 1517 274 26 11 chr1 15326342 15326722 -181868710 - MTD LTR MaLR -21 398 13 4 701 206 0 69 0 chr1 15326833 15326862 -181868570 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 701 23 0 0 0 chr1 15327671 15327694 -181867738 + AT_rich Low_complexity Low_complexity 1 23 0 4 701 758 151 0 7 chr1 15327790 15327930 -181867502 + CT-rich Low_complexity Low_complexity 2 140 0 4 701 867 277 92 42 chr1 15328017 15328398 -181867034 - BGLII_B LTR ERVK -27 414 15 4 701 700 198 18 46 chr1 15328412 15328646 -181866786 - MYSERV-int LTR ERVK -1 6549 6346 4 701 273 225 238 0 chr1 15328679 15328759 -181866673 - RLTR11A2 LTR ERVK -410 117 19 4 701 2058 163 68 30 chr1 15329064 15329463 -181865969 + MTC LTR MaLR 1 414 -7 4 701 333 359 7 14 chr1 15329875 15330019 -181865413 - Lx8 LINE L1 -145 7328 7186 4 701 272 118 0 29 chr1 15330197 15330267 -181865165 - MT2A LTR ERVL 0 533 466 4 701 204 200 0 0 chr1 15330267 15330312 -181865120 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 701 258 338 39 0 chr1 15330783 15330860 -181864572 + MER58A DNA MER1_type 1 80 -144 4 701 7513 97 0 10 chr1 15330860 15332004 -181863428 - L1_Mus3 LINE L1 -747 5136 4004 4 701 6788 98 24 2 chr1 15332004 15333438 -181861994 + L1_Mus3 LINE L1 5149 6604 -34 4 701 297 0 0 0 chr1 15333439 15333472 -181861960 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 701 204 306 60 31 chr1 15334026 15334161 -181861271 + MIRb SINE MIR 1 147 -121 4 701 483 297 15 66 chr1 15334467 15334665 -181860767 + B3A SINE B2 5 192 -6 4 701 1076 128 6 0 chr1 15334683 15334862 -181860570 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 701 22 35 0 0 chr1 15335062 15335091 -181860341 + AT_rich Low_complexity Low_complexity 1 29 0 4 702 1212 57 0 0 chr1 15335966 15336123 -181859309 - L1_Mus2 LINE L1 0 6566 6410 4 702 2459 308 30 28 chr1 15336396 15337444 -181857988 - Lx9 LINE L1 -176 7468 6419 4 702 235 380 28 0 chr1 15338002 15338073 -181857359 - RSINE1 SINE B4 -31 134 62 4 702 290 239 41 52 chr1 15338094 15338191 -181857241 + MLT1B LTR MaLR 295 390 0 4 702 418 270 54 23 chr1 15338644 15338773 -181856659 + B1F SINE Alu 10 142 -7 4 702 288 0 0 0 chr1 15339746 15339778 -181855654 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 702 640 88 114 0 chr1 15340345 15340459 -181854973 - Lx4A LINE L1 -1228 5830 5704 4 702 4401 101 22 53 chr1 15340489 15340572 -181854860 + L1_Mur2 LINE L1 2573 2655 -3222 4 702 1235 48 0 0 chr1 15340572 15340719 -181854713 + B1_Mus2 SINE Alu 1 147 0 4 702 4401 101 22 53 chr1 15340719 15341450 -181853982 + L1_Mur2 LINE L1 2656 3362 -2515 4 702 527 119 79 0 chr1 15341450 15341551 -181853881 + L1_Mur2 LINE L1 3755 3863 -2014 4 702 555 315 73 108 chr1 15341551 15341893 -181853539 + ORR1E LTR MaLR 26 355 -4 4 702 2673 338 96 59 chr1 15341899 15343342 -181852090 + MTE-int LTR MaLR 43 1538 -42 4 702 578 227 195 11 chr1 15343344 15343518 -181851914 + ORR1E LTR MaLR 15 220 -139 4 702 1344 207 114 9 chr1 15344528 15344860 -181850572 - ORR1D2 LTR MaLR -3 367 1 4 702 180 279 16 16 chr1 15345945 15346007 -181849425 - MIR SINE MIR -63 199 138 4 702 560 304 19 112 chr1 15346279 15346494 -181848938 + B3A SINE B2 3 197 -1 4 702 29 0 0 0 chr1 15346497 15346526 -181848906 + AT_rich Low_complexity Low_complexity 1 29 0 4 702 304 341 23 54 chr1 15346583 15346713 -181848719 + B4A SINE B4 51 176 -116 4 702 1599 158 190 12 chr1 15346734 15346942 -181848490 - ORR1B1 LTR MaLR -1 393 160 4 702 441 0 0 0 chr1 15346942 15346991 -181848441 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 702 1599 158 190 12 chr1 15346991 15347114 -181848318 - ORR1B1 LTR MaLR -235 159 4 4 702 264 286 0 42 chr1 15347158 15347253 -181848179 + (CATA)n Simple_repeat Simple_repeat 3 93 0 4 702 23 0 0 0 chr1 15348974 15348997 -181846435 + AT_rich Low_complexity Low_complexity 1 23 0 4 702 225 321 112 35 chr1 15350210 15350326 -181845106 - MER5A DNA MER1_type -22 167 43 4 702 394 284 40 0 chr1 15350905 15351081 -181844351 - L1MB4 LINE L1 -1 6179 5997 4 702 1325 284 29 65 chr1 15352122 15352275 -181843157 + MTE2b LTR MaLR 4 145 -234 4 702 4213 77 5 12 chr1 15352275 15352838 -181842594 - L1_Mus1 LINE L1 -1 6566 6008 4 702 1325 284 29 65 chr1 15352838 15353068 -181842364 + MTE2b LTR MaLR 146 373 -6 4 702 1821 174 58 9 chr1 15353198 15353528 -181841904 - ORR1B1 LTR MaLR -8 386 41 4 702 334 308 86 66 chr1 15354740 15354983 -181840449 + ORR1E LTR MaLR 1 248 -111 4 702 368 299 134 26 chr1 15355132 15355389 -181840043 + MER33 DNA MER1_type 41 324 0 4 702 456 191 80 14 chr1 15355474 15355612 -181839820 - RMER1B Other Other 0 1066 920 4 702 1532 201 3 12 chr1 15355760 15356085 -181839347 - RMER1B Other Other -175 891 597 4 702 1068 291 23 17 chr1 15356130 15356747 -181838685 - RMER1C Other Other -463 879 52 4 702 2161 121 15 6 chr1 15357651 15357985 -181837447 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 702 216 170 75 0 chr1 15358019 15358072 -181837360 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 4 702 343 247 19 85 chr1 15358087 15358193 -181837239 - B4A SINE B4 -2 290 192 4 702 462 331 68 78 chr1 15358494 15358802 -181836630 + ORR1E LTR MaLR 50 354 -5 4 702 24 32 0 0 chr1 15358981 15359012 -181836420 + AT_rich Low_complexity Low_complexity 1 31 0 4 702 22 0 0 0 chr1 15359283 15359305 -181836127 + AT_rich Low_complexity Low_complexity 1 22 0 4 702 330 26 0 0 chr1 15359465 15359504 -181835928 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 702 449 275 49 7 chr1 15359605 15359748 -181835684 - B1F1 SINE Alu 0 149 1 4 702 483 226 45 8 chr1 15360385 15360519 -181834913 + Lx4B LINE L1 6868 7006 -52 4 702 324 0 0 0 chr1 15360533 15360569 -181834863 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 4 702 826 278 109 51 chr1 15361632 15361981 -181833451 - MT2B LTR ERVL -5 596 180 4 702 180 320 0 0 chr1 15362054 15362104 -181833328 - L4 LINE RTE -798 1231 1182 4 702 271 143 13 25 chr1 15362107 15362186 -181833246 + T-rich Low_complexity Low_complexity 2 79 0 4 702 23614 150 31 10 chr1 15362873 15366249 -181829183 - Lx LINE L1 0 6654 3215 4 702 3159 42 37 0 chr1 15366249 15366631 -181828801 - MTA_Mm LTR MaLR 0 396 1 4 702 23614 149 16 9 chr1 15366631 15369395 -181826037 - Lx LINE L1 -2669 3214 419 4 702 715 245 95 0 chr1 15369426 15369573 -181825859 + B3A SINE B2 2 162 -36 4 702 264 30 0 0 chr1 15369587 15369620 -181825812 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 702 467 316 40 102 chr1 15369813 15370088 -181825344 - ORR1E LTR MaLR -100 259 2 4 702 1109 270 113 56 chr1 15370376 15370645 -181824787 + Tigger9b DNA MER2_type 1 265 -359 4 702 237 33 0 0 chr1 15370645 15370675 -181824757 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 702 1109 270 113 56 chr1 15370675 15370884 -181824548 + Tigger9b DNA MER2_type 266 506 -118 4 702 1203 61 0 0 chr1 15371727 15371874 -181823558 - B1_Mus1 SINE Alu -1 147 1 4 702 1057 297 70 15 chr1 15372341 15372738 -181822694 - MLT1C LTR MaLR -48 419 1 4 702 1321 105 42 19 chr1 15373048 15373261 -181822171 - Lx2 LINE L1 -5 6992 6775 4 702 972 112 121 22 chr1 15373261 15373443 -181821989 - Lx2 LINE L1 -354 6643 6444 4 702 690 272 78 4 chr1 15373457 15373701 -181821731 + MER58B DNA MER1_type 79 340 -1 4 702 782 339 29 24 chr1 15374129 15374482 -181820950 - MLT1E2 LTR MaLR -2 652 287 4 702 258 232 35 21 chr1 15374505 15374650 -181820782 - Lx9 LINE L1 -1 7643 7497 4 702 2026 254 84 35 chr1 15374661 15375115 -181820317 - Lx9 LINE L1 -185 7459 6995 4 702 207 0 0 0 chr1 15375115 15375138 -181820294 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 702 2026 254 84 35 chr1 15375138 15375406 -181820026 - Lx9 LINE L1 -650 6994 6701 4 702 593 119 29 38 chr1 15375406 15375511 -181819921 + ORR1C2 LTR MaLR 281 384 0 4 702 508 288 33 0 chr1 15375518 15375671 -181819761 - MLT1E2 LTR MaLR -445 182 25 4 702 23 33 0 0 chr1 15375713 15375743 -181819689 + AT_rich Low_complexity Low_complexity 1 30 0 4 702 303 28 0 0 chr1 15375743 15375779 -181819653 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 702 288 0 0 0 chr1 15375779 15375810 -181819622 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 702 671 295 0 0 chr1 15375827 15375966 -181819466 - RSINE1 SINE B4 -26 139 1 4 702 1431 70 16 0 chr1 15378003 15378188 -181817244 - B2_Mm2 SINE B2 -7 188 1 4 702 300 284 54 54 chr1 15378997 15379127 -181816305 - MIRc SINE MIR -136 132 3 4 702 655 231 0 7 chr1 15380637 15380772 -181814660 - ORR1E LTR MaLR -225 134 1 4 702 21 89 0 0 chr1 15380796 15380852 -181814580 + AT_rich Low_complexity Low_complexity 1 56 0 4 702 583 252 106 13 chr1 15382255 15382492 -181812940 + Charlie5 DNA MER1_type 2364 2622 -2 4 702 511 135 21 0 chr1 15384043 15384139 -181811293 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 4 702 760 311 24 32 chr1 15384255 15384507 -181810925 - MT2A LTR ERVL -105 428 179 4 702 363 286 14 77 chr1 15384614 15384822 -181810610 - MT2A LTR ERVL -279 254 60 4 702 227 233 15 77 chr1 15384790 15384855 -181810577 - MTE2a LTR MaLR -318 61 1 4 702 1127 330 30 36 chr1 15385086 15385275 -181810157 - Lx8 LINE L1 -1 7472 7287 4 702 258 32 0 0 chr1 15385275 15385306 -181810126 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 702 1127 330 30 36 chr1 15385306 15385805 -181809627 - Lx8 LINE L1 -187 7286 6789 4 702 219 190 0 0 chr1 15386016 15386074 -181809358 + T-rich Low_complexity Low_complexity 1 58 0 5 702 988 8 0 23 chr1 15386076 15386206 -181809226 - L1Md_T LINE L1 0 6582 6456 5 702 4373 10 0 0 chr1 15386206 15386718 -181808714 + L1Md_T LINE L1 5706 6217 -365 5 702 213 121 0 0 chr1 15388158 15388191 -181807241 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 5 702 1111 81 0 13 chr1 15388318 15388468 -181806964 + B1_Mus1 SINE Alu 1 148 0 5 702 1122 132 10 0 chr1 15388495 15388692 -181806740 + L1_Mm LINE L1 5141 5339 -544 5 702 3242 70 56 9 chr1 15388692 15389154 -181806278 + L1_Mus3 LINE L1 6154 6637 -1 5 702 41 36 0 0 chr1 15389246 15389301 -181806131 + AT_rich Low_complexity Low_complexity 1 55 0 5 702 335 253 34 88 chr1 15389578 15389602 -181805830 + L1MB2 LINE L1 5803 5826 -345 5 702 1347 72 0 0 chr1 15389602 15389782 -181805650 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 702 675 94 0 0 chr1 15389782 15389878 -181805554 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 5 702 335 281 47 69 chr1 15389878 15390214 -181805218 + L1MB2 LINE L1 5827 6168 -15 5 702 180 0 0 0 chr1 15390325 15390345 -181805087 + (T)n Simple_repeat Simple_repeat 1 20 0 5 702 202 325 39 0 chr1 15390571 15390648 -181804784 - MIRc SINE MIR -150 118 39 5 702 845 281 135 31 chr1 15391148 15391497 -181803935 - MER67B LTR ERV1 -36 625 241 5 702 282 371 36 20 chr1 15393472 15393722 -181801710 + L2a LINE L2 3092 3345 -81 5 702 440 359 65 0 chr1 15393742 15393926 -181801506 + MER58A DNA MER1_type 13 208 -16 5 702 509 361 77 4 chr1 15396042 15396276 -181799156 - LTR31 LTR ERV1 -99 520 270 5 702 1249 109 16 10 chr1 15396469 15396663 -181798769 + B2_Mm2 SINE B2 1 195 0 5 702 473 296 31 25 chr1 15396690 15396853 -181798579 - MER67B LTR ERV1 -181 480 317 5 702 309 261 45 0 chr1 15399664 15399752 -181795680 - ID_B1 SINE B4 -4 220 129 5 702 244 397 100 5 chr1 15400116 15400316 -181795116 + Charlie17a DNA MER1_type 1 219 0 5 702 750 200 58 89 chr1 15401435 15401748 -181793684 + Lx9 LINE L1 7294 7596 -48 5 702 404 362 107 36 chr1 15401939 15402191 -181793241 + MLT2B3 LTR ERVL 285 554 0 5 702 416 302 84 15 chr1 15402235 15402366 -181793066 + ID_B1 SINE B4 79 218 -6 5 702 416 310 52 0 chr1 15403002 15403176 -181792256 + B3A SINE B2 1 183 -15 5 702 235 308 26 96 chr1 15404441 15404556 -181790876 + MT2B LTR ERVL 151 257 -344 5 702 679 221 0 8 chr1 15404469 15404601 -181790831 + B1_Mus1 SINE Alu 18 148 0 5 702 229 282 0 40 chr1 15404673 15404747 -181790685 + GA-rich Low_complexity Low_complexity 3 73 0 5 702 261 57 0 0 chr1 15404763 15404798 -181790634 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 702 212 86 0 28 chr1 15404818 15404854 -181790578 + (GGAAA)n Simple_repeat Simple_repeat 4 38 0 5 702 732 314 207 2 chr1 15405677 15406157 -181789275 - MER77 LTR ERVL -7 600 23 5 702 222 317 152 16 chr1 15406758 15406883 -181788549 + MIR3 SINE MIR 21 162 -46 5 702 769 68 248 0 chr1 15406974 15407091 -181788341 + B1_Mm SINE Alu 2 147 0 5 702 24 0 0 0 chr1 15407991 15408015 -181787417 + AT_rich Low_complexity Low_complexity 1 24 0 5 702 659 200 35 35 chr1 15408965 15409110 -181786322 + B1_Mur3 SINE Alu 2 146 -3 5 702 1856 167 19 81 chr1 15409782 15410153 -181785279 - ORR1B1 LTR MaLR 0 394 47 5 702 640 340 105 19 chr1 15410306 15410926 -181784506 + L1MB3 LINE L1 5511 6183 0 5 702 332 311 98 52 chr1 15411050 15411223 -181784209 + MIRb SINE MIR 12 192 -76 5 702 236 338 61 20 chr1 15414530 15414678 -181780754 + L2 LINE L2 1464 1617 -1802 5 702 2780 48 0 36 chr1 15414759 15415155 -181780277 - L1_Mus1 LINE L1 0 6567 6208 5 702 279 256 0 89 chr1 15415155 15415245 -181780187 + MLT1C LTR MaLR 43 124 -343 5 702 2134 95 28 12 chr1 15415274 15415593 -181779839 + ORR1A2 LTR MaLR 4 327 0 5 702 253 290 19 0 chr1 15415593 15415667 -181779765 + PB1D10 SINE Alu 12 89 -60 5 702 227 277 0 0 chr1 15415697 15415744 -181779688 + MLT1C LTR MaLR 117 163 -304 5 702 391 326 130 11 chr1 15416058 15416235 -181779197 + B3 SINE B2 18 215 -1 5 702 837 227 109 20 chr1 15417677 15417879 -181777553 + B4 SINE B4 1 220 -72 5 702 285 29 0 0 chr1 15417931 15417965 -181777467 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 702 2651 94 5 12 chr1 15419425 15419824 -181775608 - Lx LINE L1 0 6654 6259 5 702 195 276 109 30 chr1 15420348 15420449 -181774983 - L2c LINE L2 0 3387 3279 5 702 266 301 8 81 chr1 15420553 15420676 -181774756 - RLTR8 LTR ERVK 0 365 252 5 702 1734 188 64 15 chr1 15421444 15421952 -181773480 + RLTR12A LTR ERVK 1 561 -7 5 702 353 306 81 6 chr1 15422548 15422722 -181772710 + L1MA6 LINE L1 5995 6181 -119 5 702 1318 243 86 29 chr1 15422725 15423073 -181772359 - MTEa LTR MaLR -11 368 1 5 702 270 0 0 0 chr1 15423100 15423130 -181772302 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 702 321 261 92 75 chr1 15423214 15423334 -181772098 + L1ME3A LINE L1 5841 5962 -211 5 702 241 353 108 0 chr1 15426525 15426627 -181768805 + L2c LINE L2 3261 3373 -14 5 702 275 311 98 31 chr1 15426994 15427132 -181768300 - L1MB7 LINE L1 -82 6102 5957 5 702 3059 20 0 0 chr1 15427132 15427476 -181767956 + ORR1A0 LTR MaLR 1 344 -2 5 702 275 311 98 31 chr1 15427476 15427695 -181767737 - L1MB7 LINE L1 -228 5956 5721 5 702 689 279 95 25 chr1 15429135 15429418 -181766014 + Lx8 LINE L1 7110 7412 -61 5 702 427 103 23 11 chr1 15429495 15429583 -181765849 + (CAGA)n Simple_repeat Simple_repeat 2 90 0 5 702 180 49 0 89 chr1 15431763 15431808 -181763624 + (TTATA)n Simple_repeat Simple_repeat 3 43 0 5 702 1142 226 14 0 chr1 15432203 15432411 -181763021 - B3 SINE B2 0 216 6 5 702 25 65 0 0 chr1 15432438 15432484 -181762948 + AT_rich Low_complexity Low_complexity 1 46 0 5 702 25 75 0 0 chr1 15432677 15432730 -181762702 + AT_rich Low_complexity Low_complexity 1 53 0 5 702 343 303 9 44 chr1 15433664 15433778 -181761654 - L2c LINE L2 -5 3382 3273 5 702 474 282 96 33 chr1 15434253 15434524 -181760908 - B4A SINE B4 -4 288 1 5 702 610 321 0 0 chr1 15436005 15436139 -181759293 + RSINE1 SINE B4 3 136 -29 5 702 287 325 97 0 chr1 15437509 15437623 -181757809 - LTR16A LTR ERVL -160 291 167 5 702 241 119 0 33 chr1 15437731 15437792 -181757640 + L1Md_F2 LINE L1 6524 6582 0 5 702 195 42 0 0 chr1 15437837 15437861 -181757571 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 702 23 0 0 0 chr1 15437883 15437906 -181757526 + AT_rich Low_complexity Low_complexity 1 23 0 5 702 393 138 0 0 chr1 15438281 15438361 -181757071 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 702 589 226 131 65 chr1 15438543 15438862 -181756570 - MLT1A1 LTR MaLR -2 406 30 5 702 1017 139 187 0 chr1 15439408 15439595 -181755837 + URR1B DNA MER1_type 3 224 -1 5 702 200 411 82 7 chr1 15440323 15440470 -181754962 - L3b LINE CR1 -25 457 300 5 702 192 40 0 0 chr1 15442415 15442440 -181752992 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 5 702 201 74 0 0 chr1 15442440 15442467 -181752965 + (ATG)n Simple_repeat Simple_repeat 2 28 0 5 702 428 77 15 0 chr1 15443150 15443215 -181752217 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 702 181 238 0 24 chr1 15443215 15443297 -181752135 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 5 702 546 16 0 0 chr1 15443332 15443395 -181752037 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 702 277 336 78 35 chr1 15443838 15443980 -181751452 - MLT1I LTR MaLR -70 341 194 5 702 626 275 120 42 chr1 15444976 15445266 -181750166 + MTEa LTR MaLR 22 341 -38 5 702 200 111 28 0 chr1 15446190 15446226 -181749206 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 5 702 417 54 0 0 chr1 15446641 15446697 -181748735 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 702 538 297 0 0 chr1 15446811 15446949 -181748483 + MER2 DNA MER2_type 141 278 -67 5 702 197 83 28 0 chr1 15448371 15448407 -181747025 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 5 702 187 337 55 66 chr1 15448414 15448595 -181746837 + L2c LINE L2 2939 3117 -270 5 702 1138 282 33 36 chr1 15448705 15448736 -181746696 - ORR1E LTR MaLR 0 359 330 5 702 180 77 0 0 chr1 15448736 15448762 -181746670 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 702 1138 282 33 36 chr1 15448762 15449090 -181746342 - ORR1E LTR MaLR -30 329 1 5 702 24 32 0 0 chr1 15449273 15449304 -181746128 + AT_rich Low_complexity Low_complexity 1 31 0 5 702 343 241 143 0 chr1 15450972 15451084 -181744348 + MER53 DNA hAT 1 128 -65 5 702 3777 177 66 82 chr1 15451936 15452461 -181742971 + L1_Mus1 LINE L1 222 785 -5831 5 702 4419 83 10 5 chr1 15452461 15453057 -181742375 + L1Md_F2 LINE L1 5984 6582 0 5 702 29081 119 12 13 chr1 15453057 15457628 -181737804 + L1_Mus1 LINE L1 786 5298 -585 5 702 2808 86 0 15 chr1 15457628 15458019 -181737413 + L1Md_F2 LINE L1 6196 6580 -2 5 702 29081 67 1 1 chr1 15458019 15459243 -181736189 + L1_Mus1 LINE L1 5299 6526 -41 5 702 3998 113 30 33 chr1 15459247 15459889 -181735543 + Lx LINE L1 6012 6651 -3 5 702 398 307 49 10 chr1 15459896 15459998 -181735434 + RSINE1 SINE B4 42 147 -18 5 702 790 116 0 13 chr1 15460045 15460194 -181735238 + (ATG)n Simple_repeat Simple_repeat 3 149 0 5 702 384 22 0 0 chr1 15460672 15460717 -181734715 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 702 253 221 44 0 chr1 15460757 15460825 -181734607 - MER53 DNA hAT -116 77 7 5 702 1584 249 76 22 chr1 15461999 15462465 -181732967 + MT2A LTR ERVL 6 494 -39 5 702 333 0 0 0 chr1 15462465 15462502 -181732930 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 702 1584 249 76 22 chr1 15462502 15462536 -181732896 + MT2A LTR ERVL 495 532 -1 5 702 374 318 110 10 chr1 15462553 15462753 -181732679 + MLT1A LTR MaLR 141 360 -14 6 702 1100 109 0 0 chr1 15463272 15463419 -181732013 + B1_Mus1 SINE Alu 2 148 0 6 702 304 212 183 17 chr1 15463459 15463574 -181731858 + L1ME4a LINE L1 5986 6119 -5 6 702 243 273 30 0 chr1 15464131 15464230 -181731202 + L1MA7 LINE L1 6190 6291 0 6 702 219 69 0 0 chr1 15466402 15466431 -181729001 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 87 300 236 79 0 chr1 15466466 15466555 -181728877 - Lx7 LINE L1 -396 7300 7205 6 703 737 278 17 34 chr1 15466588 15466826 -181728606 - Lx7 LINE L1 -752 6944 6711 6 703 17527 121 21 5 chr1 15467338 15471113 -181724319 - L1_Mus3 LINE L1 -7 6631 2789 6 703 238 330 152 0 chr1 15472827 15472945 -181722487 + L2b LINE L2 3238 3373 -2 6 703 360 351 100 12 chr1 15473316 15473530 -181721902 + MIRb SINE MIR 1 233 -35 6 703 235 180 20 20 chr1 15473603 15473654 -181721778 + GA-rich Low_complexity Low_complexity 2 52 0 6 703 885 84 70 0 chr1 15474242 15474384 -181721048 + L1Md_F2 LINE L1 6431 6582 0 6 703 854 114 7 0 chr1 15474901 15475041 -181720391 - Lx2B LINE L1 -986 6014 5874 6 703 3743 204 45 45 chr1 15475016 15476017 -181719415 + Lx2B LINE L1 5992 6992 -8 6 703 3282 78 5 0 chr1 15476660 15477097 -181718335 - L1_Mus1 LINE L1 0 6567 6129 6 703 329 62 21 0 chr1 15477698 15477746 -181717686 + (TTA)n Simple_repeat Simple_repeat 2 50 0 6 703 806 186 0 27 chr1 15477749 15477898 -181717534 - B1_Mur4 SINE Alu 0 150 6 6 703 7626 223 41 45 chr1 15478494 15479486 -181715946 - Lx7 LINE L1 0 7696 6753 6 703 231 36 0 0 chr1 15479486 15479514 -181715918 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 703 7626 191 91 41 chr1 15479514 15481502 -181713930 - Lx7 LINE L1 -944 6752 4623 6 703 37282 43 12 3 chr1 15481545 15487776 -181707656 - L1Md_T LINE L1 0 6582 335 6 703 5951 152 55 20 chr1 15487776 15489050 -181706382 - Lx7 LINE L1 -1228 4652 3335 6 703 2037 207 2 73 chr1 15489051 15489150 -181706282 - MTC LTR MaLR 0 421 349 6 703 315 0 0 0 chr1 15489150 15489185 -181706247 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 703 2037 207 2 73 chr1 15489185 15489431 -181706001 - MTC LTR MaLR -73 348 108 6 703 3402 33 2 0 chr1 15489431 15489826 -181705606 + MTA_Mm LTR MaLR 1 396 0 6 703 2037 207 2 73 chr1 15489826 15489932 -181705500 - MTC LTR MaLR -314 107 1 6 703 3689 157 37 24 chr1 15489932 15490721 -181704711 - Lx7 LINE L1 -2542 3338 2540 6 703 1037 163 0 10 chr1 15490732 15490937 -181704495 - Lx7 LINE L1 -4181 1699 1497 6 703 525 144 0 0 chr1 15490937 15491027 -181704405 + (TCC)n Simple_repeat Simple_repeat 3 92 0 6 703 288 156 0 45 chr1 15491036 15491048 -181704384 - Lx7 LINE L1 -4364 1516 1505 6 703 1074 101 17 0 chr1 15491048 15491397 -181704035 + (TCC)n Simple_repeat Simple_repeat 1 355 0 6 703 309 127 0 3 chr1 15491397 15491449 -181703983 - Lx7 LINE L1 -4376 1504 1450 6 703 351 117 0 0 chr1 15491457 15491517 -181703915 + L1_Mur3 LINE L1 2830 2889 -2991 6 703 10766 32 0 1 chr1 15491517 15492863 -181702569 + L1Md_F2 LINE L1 4242 5586 -297 6 703 8174 42 1 5 chr1 15492863 15493861 -181701571 + L1Md_F2 LINE L1 5587 6580 -2 6 703 726 203 7 0 chr1 15493880 15494033 -181701399 + L1_Mur3 LINE L1 2874 3027 -2853 6 703 3350 186 62 52 chr1 15494065 15494920 -181700512 - Lx7 LINE L1 -6548 1180 317 6 703 454 333 25 0 chr1 15494943 15495063 -181700369 - B1F1 SINE Alu -15 134 12 6 703 283 159 0 0 chr1 15495158 15495202 -181700230 + B1F SINE Alu 100 143 -6 6 703 204 214 0 0 chr1 15495398 15495454 -181699978 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 703 318 331 6 6 chr1 15495468 15495632 -181699800 + (CATA)n Simple_repeat Simple_repeat 4 167 0 6 703 209 293 24 0 chr1 15495681 15495763 -181699669 + (CATA)n Simple_repeat Simple_repeat 1 84 0 6 703 441 0 0 0 chr1 15497047 15497096 -181698336 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 703 196 370 60 62 chr1 15498325 15498709 -181696723 - L2a LINE L2 -4 3422 3040 6 703 451 264 49 28 chr1 15499170 15499347 -181696085 + B3A SINE B2 1 184 -9 6 703 22 0 0 0 chr1 15499407 15499429 -181696003 + AT_rich Low_complexity Low_complexity 1 22 0 6 703 1073 102 5 64 chr1 15499812 15500000 -181695432 - L1_Mus1 LINE L1 -15 6552 6376 6 703 30300 105 15 8 chr1 15500000 15504723 -181690709 - L1_Mus1 LINE L1 -192 6378 1618 1 703 2828 59 118 3 chr1 15504723 15505078 -181690354 + MTA_Mm LTR MaLR 1 396 0 2 703 30300 159 16 58 chr1 15505078 15506173 -181689259 - L1_Mus1 LINE L1 -4269 1617 551 1 703 342 277 8 8 chr1 15506286 15506406 -181689026 - L1VL1 LINE L1 -6022 400 281 3 703 238 250 192 138 chr1 15506912 15506929 -181688503 - B3 SINE B2 -55 161 151 4 703 414 0 0 0 chr1 15506929 15506975 -181688457 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 703 238 250 192 138 chr1 15506975 15507087 -181688345 - B3 SINE B2 -66 150 25 4 703 3841 121 14 0 chr1 15507159 15507728 -181687704 - L1_Mm LINE L1 -184 5699 5123 6 703 13804 128 35 45 chr1 15507735 15511009 -181684423 - L1VL1 LINE L1 -421 3277 29 7 703 268 261 188 0 chr1 15511244 15511420 -181684012 - L1MA8 LINE L1 -17 6274 6066 8 703 22201 80 8 1 chr1 15511990 15515639 -181679793 - L1Md_F2 LINE L1 -2 6580 2909 9 703 8568 27 0 1 chr1 15515641 15516903 -181678529 - L1Md_T LINE L1 -1 6581 5321 1 703 3603 19 0 2 chr1 15516901 15517316 -181678116 + L1_Mm LINE L1 3658 4071 -1812 1 703 12886 129 16 51 chr1 15517302 15520186 -181675246 - L1Md_F2 LINE L1 -2958 2925 217 9 703 685 310 57 43 chr1 15520482 15520868 -181674564 + MLT2B1 LTR ERVL 10 496 -71 1 703 369 345 0 0 chr1 15520876 15520992 -181674440 - Tigger5 DNA MER2_type 0 2406 2291 1 703 204 67 0 0 chr1 15521195 15521225 -181674207 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 703 360 43 0 0 chr1 15521225 15521271 -181674161 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 703 239 333 0 0 chr1 15521685 15521751 -181673681 - tRNA-Ala-GCG tRNA tRNA -1 74 9 1 703 214 356 14 0 chr1 15521691 15521764 -181673668 - ID4_ SINE ID -9 74 1 1 703 1042 67 81 7 chr1 15522495 15522631 -181672801 + B1_Mm SINE Alu 2 147 0 1 703 303 345 76 25 chr1 15523162 15523400 -181672032 + L1MC3 LINE L1 7459 7708 -77 1 703 21 0 0 0 chr1 15524738 15524759 -181670673 + AT_rich Low_complexity Low_complexity 1 21 0 2 703 1455 268 78 15 chr1 15525094 15525503 -181669929 - Lx6 LINE L1 -9 7451 7017 2 703 646 241 151 75 chr1 15525761 15526106 -181669326 - MLT1C LTR MaLR 0 467 97 2 703 2550 67 0 0 chr1 15526535 15526835 -181668597 + L1_Mus1 LINE L1 6268 6567 0 2 703 1077 140 0 0 chr1 15526886 15527064 -181668368 + (GGA)n Simple_repeat Simple_repeat 2 179 0 2 703 324 0 0 0 chr1 15527174 15527210 -181668222 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 703 749 11 11 0 chr1 15528529 15528619 -181666813 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 703 198 103 0 0 chr1 15529742 15529771 -181665661 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 2 703 2862 123 55 11 chr1 15530372 15530806 -181664626 + L1_Mus3 LINE L1 6174 6626 -12 2 703 1751 164 48 48 chr1 15531831 15532163 -181663269 - Lx5 LINE L1 0 7050 6719 2 703 1327 156 88 11 chr1 15532162 15532422 -181663010 + Lx5 LINE L1 6426 6705 -345 2 703 716 93 0 162 chr1 15532441 15532595 -181662837 - L1_Mus1 LINE L1 -1 6566 6438 3 703 215 314 164 8 chr1 15533120 15533242 -181662190 + MIRb SINE MIR 113 253 -15 3 703 398 302 0 0 chr1 15533409 15533505 -181661927 + MER5A DNA MER1_type 78 173 -16 3 703 750 317 25 4 chr1 15533781 15534022 -181661410 + B4A SINE B4 3 248 -44 3 703 220 188 0 30 chr1 15534039 15534105 -181661327 + GA-rich Low_complexity Low_complexity 1 64 0 3 703 201 244 0 0 chr1 15534147 15534192 -181661240 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 703 13849 97 27 53 chr1 15535539 15538364 -181657068 - Lx3_Mus LINE L1 -1 7008 4311 3 703 4691 53 0 4 chr1 15538364 15538908 -181656524 - L1Md_F2 LINE L1 -10 6572 6031 3 703 13849 101 30 55 chr1 15538908 15539464 -181655968 - Lx3_Mus LINE L1 -1576 4310 3744 3 703 23 78 0 0 chr1 15539834 15539885 -181655547 + AT_rich Low_complexity Low_complexity 1 51 0 3 703 977 165 206 0 chr1 15540097 15540267 -181655165 - B3 SINE B2 -10 206 2 3 703 1832 201 44 11 chr1 15540405 15540767 -181654665 + ORR1D1 LTR MaLR 1 374 0 4 703 633 380 25 11 chr1 15540872 15541151 -181654281 - B4A SINE B4 0 292 10 4 703 566 186 21 0 chr1 15541458 15541555 -181653877 + PB1D9 SINE Alu 9 107 -13 4 703 441 0 0 0 chr1 15541558 15541607 -181653825 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 703 271 314 57 97 chr1 15543658 15543834 -181651598 - MER5A DNA MER1_type -6 183 15 4 703 682 249 36 56 chr1 15543931 15544127 -181651305 - B3A SINE B2 -6 192 1 4 703 242 347 0 0 chr1 15544142 15544214 -181651218 - B1_Mur2 SINE Alu -7 142 71 4 703 510 299 25 10 chr1 15544401 15544645 -181650787 + L1VL1 LINE L1 182 446 -5976 4 703 2473 104 14 14 chr1 15544645 15545007 -181650425 + L1_Mus3 LINE L1 6268 6629 -9 4 703 941 89 0 0 chr1 15545007 15545142 -181650290 + L1_Mus2 LINE L1 6432 6566 0 4 703 188 271 86 0 chr1 15545210 15545280 -181650152 - MER5B DNA MER1_type -83 95 20 5 703 367 182 169 0 chr1 15545401 15545478 -181649954 + RMER15 LTR ERVL 1 90 -485 5 703 2368 180 74 20 chr1 15545478 15545978 -181649454 + RMER15 LTR ERVL 47 573 -2 5 703 306 289 11 11 chr1 15546286 15546377 -181649055 + Lx8 LINE L1 7084 7174 -299 5 703 186 43 0 0 chr1 15546402 15546425 -181649007 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 703 4868 53 0 2 chr1 15546429 15546998 -181648434 - L1Md_F2 LINE L1 -5 6577 6010 5 703 1402 277 159 33 chr1 15547085 15548258 -181647174 - L1MB7 LINE L1 -8 6176 4841 5 703 201 387 48 8 chr1 15549584 15549709 -181645723 + MIRb SINE MIR 116 245 -23 5 703 833 289 52 23 chr1 15549851 15550159 -181645273 - ORR1E LTR MaLR -42 317 1 5 703 544 257 9 0 chr1 15551686 15551795 -181643637 + B1F SINE Alu 9 118 -31 5 703 201 240 0 20 chr1 15551802 15551853 -181643579 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 703 192 40 0 0 chr1 15552084 15552109 -181643323 + (CTAAT)n Simple_repeat Simple_repeat 2 26 0 6 703 291 266 163 27 chr1 15552659 15552806 -181642626 - MIR SINE MIR -55 207 41 6 703 336 200 0 0 chr1 15553609 15553679 -181641753 + GA-rich Low_complexity Low_complexity 3 72 0 6 703 325 339 0 50 chr1 15553711 15553832 -181641600 - B3A SINE B2 -71 127 13 6 703 228 35 0 0 chr1 15555529 15555558 -181639874 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 703 264 329 68 41 chr1 15556591 15556737 -181638695 - MLT1A1 LTR MaLR -12 396 247 6 703 960 139 0 0 chr1 15557199 15557357 -181638075 + (GAGAA)n Simple_repeat Simple_repeat 4 161 0 6 703 626 245 52 32 chr1 15557444 15557690 -181637742 + MTEb LTR MaLR 99 379 0 6 703 695 279 0 0 chr1 15557906 15558064 -181637368 + RSINE1 SINE B4 1 158 -7 6 703 476 238 112 30 chr1 15559364 15559498 -181635934 - RSINE1 SINE B4 -13 152 8 6 703 1169 251 74 8 chr1 15561618 15561971 -181633461 - L1_Mur3 LINE L1 -675 5205 4830 7 703 230 294 79 31 chr1 15561938 15562166 -181633266 + Lx7 LINE L1 7443 7681 -15 7 703 457 49 0 0 chr1 15562700 15562761 -181632671 + B1_Mm SINE Alu 87 147 0 7 703 559 359 71 40 chr1 15563286 15563707 -181631725 + Tigger13a DNA MER2_type 147 580 -191 7 703 227 303 13 26 chr1 15564472 15564550 -181630882 - MLT1A LTR MaLR -12 362 286 7 703 1415 84 11 0 chr1 15564626 15564816 -181630616 + B2_Mm1t SINE B2 2 193 0 7 703 638 83 25 2 chr1 15564970 15565076 -181630356 + B1_Mus1 SINE Alu 1 117 -3 7 703 300 53 0 0 chr1 15565076 15565114 -181630318 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 703 747 299 76 76 chr1 15565181 15565496 -181629936 + MTE2a LTR MaLR 6 320 -59 7 703 978 248 5 10 chr1 15565780 15565984 -181629448 + B3 SINE B2 9 211 -5 7 703 546 252 34 0 chr1 15566045 15566164 -181629268 + B1_Mur1 SINE Alu 27 149 0 8 703 288 0 0 0 chr1 15567163 15567195 -181628237 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 703 234 327 47 0 chr1 15569430 15569537 -181625895 - RMER2 LTR ERV1 -11 556 445 8 703 696 298 13 0 chr1 15569657 15569815 -181625617 + B3A SINE B2 1 160 -38 8 703 543 31 0 0 chr1 15569826 15569891 -181625541 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 703 1185 302 43 7 chr1 15569916 15570356 -181625076 - Lx7 LINE L1 -462 7234 6779 8 703 1948 184 35 19 chr1 15570359 15570725 -181624707 - ORR1C1 LTR MaLR 0 378 7 8 703 599 0 14 0 chr1 15571527 15571598 -181623834 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 8 703 1968 33 29 0 chr1 15572931 15573176 -181622256 + L1Md_F2 LINE L1 5335 5586 -297 8 703 8389 31 3 1 chr1 15573177 15574170 -181621262 + L1Md_F2 LINE L1 5588 6582 0 8 703 228 260 53 40 chr1 15576658 15576734 -181618698 - ORR1D1 LTR MaLR -13 366 290 8 703 582 258 39 0 chr1 15576976 15577104 -181618328 - B1_Mur2 SINE Alu -6 143 11 9 703 348 346 58 29 chr1 15577104 15577184 -181618248 - ID_B1 SINE B4 -6 218 5 9 703 1156 68 0 0 chr1 15577507 15577653 -181617779 - B1_Mus1 SINE Alu -2 146 1 9 703 30 83 0 0 chr1 15577768 15577840 -181617592 + AT_rich Low_complexity Low_complexity 1 72 0 9 703 1279 197 147 17 chr1 15578035 15578334 -181617098 - ORR1D1 LTR MaLR -36 338 1 8 703 282 264 28 0 chr1 15578649 15578721 -181616711 + B1F1 SINE Alu 31 104 -45 9 703 394 327 0 0 chr1 15578895 15578995 -181616437 - PB1D7 SINE Alu 0 120 21 9 703 739 311 24 20 chr1 15580192 15580438 -181614994 + AmnSINE1 SINE SINE 300 546 -29 9 703 192 125 0 0 chr1 15580887 15580919 -181614513 + (CGG)n Simple_repeat Simple_repeat 3 34 0 9 703 315 341 0 0 chr1 15580929 15581017 -181614415 + (CTA)n Simple_repeat Simple_repeat 1 88 0 9 703 784 216 0 7 chr1 15582018 15582167 -181613265 - B1_Mur1 SINE Alu -1 148 1 9 703 267 319 0 62 chr1 15583517 15583614 -181611818 + ORR1E LTR MaLR 1 91 -288 1 703 282 292 178 53 chr1 15583661 15583813 -181611619 + ORR1E LTR MaLR 65 235 -124 1 703 23 86 0 0 chr1 15583883 15583941 -181611491 + AT_rich Low_complexity Low_complexity 1 58 0 1 703 218 170 0 36 chr1 15584907 15584962 -181610470 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 703 420 117 0 0 chr1 15584978 15585055 -181610377 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 703 237 65 0 0 chr1 15585055 15585086 -181610346 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 703 842 129 7 0 chr1 15585120 15585260 -181610172 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 1 703 348 24 0 0 chr1 15585999 15586040 -181609392 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 703 327 49 0 0 chr1 15586040 15586080 -181609352 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 703 582 298 0 58 chr1 15586577 15586748 -181608684 + RSINE1 SINE B4 3 163 -2 1 703 198 0 0 0 chr1 15586959 15586981 -181608451 + (T)n Simple_repeat Simple_repeat 1 22 0 1 703 1190 68 0 0 chr1 15586981 15587128 -181608304 - B1_Mus1 SINE Alu 0 148 2 1 703 194 161 0 0 chr1 15587672 15587703 -181607729 + MIRm SINE MIR 245 275 -1 1 703 273 57 0 0 chr1 15588879 15588914 -181606518 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 703 794 152 0 7 chr1 15588947 15589087 -181606345 - B1_Mur2 SINE Alu -2 145 14 1 703 243 253 44 44 chr1 15589073 15589164 -181606268 - B4A SINE B4 0 292 202 1 703 1005 123 17 0 chr1 15589438 15589617 -181605815 - Lx2 LINE L1 0 6997 6816 1 703 258 256 13 13 chr1 15589666 15589745 -181605687 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 703 240 86 0 0 chr1 15590282 15590317 -181605115 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 1 703 210 71 0 0 chr1 15590509 15590537 -181604895 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 703 201 108 0 0 chr1 15590915 15590952 -181604480 + (A)n Simple_repeat Simple_repeat 1 37 0 1 703 339 141 0 0 chr1 15591452 15591516 -181603916 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 703 328 271 21 21 chr1 15591699 15591842 -181603590 - L1ME3A LINE L1 -196 5977 5835 1 703 212 258 77 46 chr1 15592055 15592120 -181603312 - B4 SINE B4 -157 135 69 1 703 3125 140 114 24 chr1 15592131 15592762 -181602670 - RMER6C LTR ERVK 0 690 3 1 703 442 341 94 33 chr1 15592765 15593041 -181602391 - L1ME3A LINE L1 -421 5752 5460 1 703 183 80 0 0 chr1 15593091 15593116 -181602316 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 1 703 429 258 82 0 chr1 15593864 15593961 -181601471 - PB1D10 SINE Alu -1 116 12 1 703 800 180 8 0 chr1 15594447 15594575 -181600857 + B3 SINE B2 2 130 -86 1 703 495 332 73 73 chr1 15596080 15596437 -181598995 + ORR1E LTR MaLR 1 357 -2 1 703 413 282 4 37 chr1 15596615 15596734 -181598698 + B1F SINE Alu 12 142 -7 1 704 229 301 30 75 chr1 15597573 15597706 -181597726 + MER90a LTR ERV1 317 443 -171 1 704 403 307 12 18 chr1 15598778 15598947 -181596485 + (CATA)n Simple_repeat Simple_repeat 4 171 0 1 704 359 341 6 16 chr1 15598870 15599089 -181596343 + (CA)n Simple_repeat Simple_repeat 1 216 0 1 704 408 246 71 43 chr1 15599276 15599416 -181596016 - RMER5 LTR ERV1 -351 183 40 1 704 565 268 6 25 chr1 15600058 15600215 -181595217 + RSINE1 SINE B4 2 155 -10 1 704 201 94 0 0 chr1 15600225 15600257 -181595175 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 704 329 129 114 0 chr1 15600544 15600614 -181594818 - Lx7 LINE L1 -5 7691 7614 1 704 239 226 43 106 chr1 15601099 15601193 -181594239 - MIRb SINE MIR -50 218 131 1 704 487 224 159 43 chr1 15601387 15601550 -181593882 + B3A SINE B2 1 182 -16 1 704 333 68 0 0 chr1 15601557 15601601 -181593831 + (TAA)n Simple_repeat Simple_repeat 3 46 0 1 704 429 20 0 0 chr1 15601761 15601811 -181593621 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 704 551 252 59 7 chr1 15601828 15601964 -181593468 - B1F SINE Alu -5 144 2 1 704 397 294 11 34 chr1 15602658 15602834 -181592598 - L1MA9 LINE L1 -10 6173 6002 1 704 587 292 81 11 chr1 15602946 15603388 -181592044 - L1MA9 LINE L1 -483 5829 5342 1 704 239 299 69 0 chr1 15603963 15604050 -181591382 + L3b LINE CR1 177 269 -213 1 704 1300 70 16 31 chr1 15604758 15604951 -181590481 + B2_Mm2 SINE B2 2 191 -4 1 704 196 362 56 21 chr1 15605369 15605513 -181589919 + L2c LINE L2 3203 3351 -36 1 704 302 250 26 0 chr1 15607151 15607227 -181588205 + ID4 SINE ID 3 80 -3 1 704 216 0 0 0 chr1 15608616 15608640 -181586792 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 704 455 298 159 43 chr1 15609080 15609494 -181585938 - LTR40b LTR ERVL 0 462 1 1 704 407 211 60 95 chr1 15610109 15610277 -181585155 - RNLTR23 LTR ERVK -2 640 479 1 704 1419 229 10 16 chr1 15611153 15611459 -181583973 + Lx5 LINE L1 6741 7044 -6 1 704 996 55 0 0 chr1 15611459 15611586 -181583846 + (CATA)n Simple_repeat Simple_repeat 2 128 0 1 704 189 0 0 0 chr1 15612250 15612271 -181583161 + (CTTG)n Simple_repeat Simple_repeat 3 23 0 1 704 298 233 0 62 chr1 15612274 15612338 -181583094 - PB1D7 SINE Alu -59 61 2 1 704 232 140 0 39 chr1 15612637 15612689 -181582743 + A-rich Low_complexity Low_complexity 6 55 0 1 704 21 0 0 0 chr1 15613122 15613143 -181582289 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 267 291 58 51 chr1 15613329 15613485 -181581947 - MER5C1 DNA MER1_type 0 263 107 1 704 401 36 18 0 chr1 15613825 15613880 -181581552 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 704 508 62 12 12 chr1 15613881 15613963 -181581469 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 704 440 340 67 20 chr1 15614004 15614199 -181581233 - MLT1C LTR MaLR -70 397 194 1 704 968 204 214 22 chr1 15614515 15614791 -181580641 - MTD LTR MaLR -5 414 86 1 704 505 242 33 146 chr1 15616597 15616810 -181578622 + B3A SINE B2 2 190 -8 1 704 645 214 30 30 chr1 15616828 15617030 -181578402 + Charlie5 DNA MER1_type 2421 2622 -2 1 704 651 285 73 24 chr1 15617204 15617409 -181578023 + B3 SINE B2 1 215 -1 1 704 828 75 0 0 chr1 15617492 15617599 -181577833 + B1_Mus1 SINE Alu 1 107 -41 1 704 663 230 19 39 chr1 15617697 15617851 -181577581 + B3A SINE B2 1 151 -47 1 704 414 0 0 0 chr1 15617851 15617897 -181577535 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 704 742 256 188 12 chr1 15618666 15618911 -181576521 + B4A SINE B4 1 288 -4 1 704 821 188 8 0 chr1 15619529 15619662 -181575770 + B1_Mur4 SINE Alu 5 138 -12 1 704 29 0 0 0 chr1 15619766 15619795 -181575637 + AT_rich Low_complexity Low_complexity 1 29 0 1 704 1156 96 0 14 chr1 15620262 15620410 -181575022 - B1_Mus2 SINE Alu 0 147 2 1 704 227 200 0 0 chr1 15621121 15621161 -181574271 + URR1B DNA MER1_type 1 40 -185 1 704 255 222 47 16 chr1 15621232 15621296 -181574136 + GA-rich Low_complexity Low_complexity 2 67 0 1 704 528 16 0 0 chr1 15621901 15621962 -181573470 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1 704 356 331 92 5 chr1 15622355 15622599 -181572833 - L1MA7 LINE L1 -380 5911 5644 1 704 186 67 43 22 chr1 15622808 15622854 -181572578 + (GTTTG)n Simple_repeat Simple_repeat 5 51 0 1 704 331 176 0 21 chr1 15622975 15623068 -181572364 + CT-rich Low_complexity Low_complexity 3 93 0 1 704 478 282 91 34 chr1 15623103 15623367 -181572065 - L1MA7 LINE L1 -750 5393 5112 1 704 2496 91 25 19 chr1 15623563 15623888 -181571544 + ORR1A2 LTR MaLR 1 327 0 1 704 405 0 0 0 chr1 15624290 15624335 -181571097 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 704 908 274 88 99 chr1 15624832 15625196 -181570236 - ORR1D2 LTR MaLR -2 368 9 1 704 549 88 0 0 chr1 15625490 15625570 -181569862 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 704 261 0 0 0 chr1 15625587 15625616 -181569816 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 704 642 165 90 8 chr1 15625620 15625742 -181569690 - B1_Mus2 SINE Alu -7 140 9 1 704 522 282 0 57 chr1 15626428 15626552 -181568880 + PB1D10 SINE Alu 1 117 0 1 704 631 260 99 76 chr1 15626560 15626864 -181568568 - MamRep434 DNA TcMar -111 315 5 1 704 281 276 26 0 chr1 15626947 15627023 -181568409 + GA-rich Low_complexity Low_complexity 4 81 0 1 704 228 341 64 117 chr1 15628704 15628907 -181566525 + L2b LINE L2 3097 3293 -82 1 704 1484 105 73 13 chr1 15628907 15629139 -181566293 - L1_Mus3 LINE L1 0 6638 6393 1 704 228 341 64 117 chr1 15629139 15629217 -181566215 + L2b LINE L2 3294 3363 -12 1 704 4541 97 5 0 chr1 15629226 15629805 -181565627 + MT2B2 LTR ERVL 3 584 0 1 704 1157 53 0 0 chr1 15630093 15630225 -181565207 + B1_Mus1 SINE Alu 4 135 -13 1 704 423 0 0 0 chr1 15630225 15630272 -181565160 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 1 704 1607 187 33 77 chr1 15631158 15631587 -181563845 - RMER17C LTR ERVK 0 410 1 1 704 12015 171 98 95 chr1 15631587 15631956 -181563476 - RMER17C-int LTR ERVK 0 3238 2880 1 704 222 37 0 0 chr1 15631956 15631983 -181563449 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 704 12015 171 98 95 chr1 15631983 15632257 -181563175 - RMER17C-int LTR ERVK -359 2879 2607 1 704 252 195 0 0 chr1 15632257 15632298 -181563134 + LSU-rRNA_Hsa rRNA rRNA 4206 4246 -789 1 704 12015 171 98 95 chr1 15632298 15633332 -181562100 - RMER17C-int LTR ERVK -359 2606 1572 1 704 279 0 0 0 chr1 15633332 15633363 -181562069 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 704 12015 171 98 95 chr1 15633363 15633525 -181561907 - RMER17C-int LTR ERVK -1667 1571 1413 1 704 2066 112 40 95 chr1 15633525 15633871 -181561561 + ORR1A2 LTR MaLR 1 327 0 1 704 12015 171 98 95 chr1 15633871 15634675 -181560757 - RMER17C-int LTR ERVK -1826 1412 599 1 704 369 0 0 0 chr1 15634675 15634716 -181560716 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1 704 12015 171 98 95 chr1 15634716 15635259 -181560173 - RMER17C-int LTR ERVK -2640 598 4 1 704 1471 206 39 99 chr1 15635259 15635486 -181559946 - RMER17C LTR ERVK 0 410 180 1 704 1071 24 0 0 chr1 15635486 15635612 -181559820 + (GGAGA)n Simple_repeat Simple_repeat 2 127 0 1 704 1471 206 39 99 chr1 15635612 15635820 -181559612 - RMER17C LTR ERVK -231 179 1 1 704 455 219 0 0 chr1 15636269 15636392 -181559040 - Lx9 LINE L1 -26 7618 7496 1 704 369 0 0 0 chr1 15636400 15636441 -181558991 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 704 4807 144 96 47 chr1 15636441 15636646 -181558786 - RLTR25A LTR ERVK -2 1101 900 1 704 198 0 0 0 chr1 15636646 15636668 -181558764 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 704 348 88 0 0 chr1 15636670 15636727 -181558705 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 704 4807 144 96 47 chr1 15636727 15637074 -181558358 - RLTR25A LTR ERVK -204 899 515 1 704 234 0 0 0 chr1 15637074 15637100 -181558332 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 704 4807 144 96 47 chr1 15637100 15637553 -181557879 - RLTR25A LTR ERVK -589 514 44 1 704 255 340 9 19 chr1 15637562 15637667 -181557765 + B4A SINE B4 184 287 -5 2 704 461 142 54 0 chr1 15637674 15637882 -181557550 + (CA)n Simple_repeat Simple_repeat 1 219 0 2 704 192 97 0 0 chr1 15637882 15637913 -181557519 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 704 402 287 88 7 chr1 15637923 15638060 -181557372 + B1F SINE Alu 1 148 -1 2 704 406 288 166 0 chr1 15638454 15638593 -181556839 + RSINE1 SINE B4 2 163 -2 2 704 250 279 77 51 chr1 15638713 15638830 -181556602 + MIRc SINE MIR 85 204 -64 2 704 183 129 0 0 chr1 15638948 15638979 -181556453 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2 704 286 279 29 14 chr1 15639221 15639290 -181556142 + ID4 SINE ID 8 77 -6 2 704 267 228 10 29 chr1 15639302 15639406 -181556026 + (CATA)n Simple_repeat Simple_repeat 1 102 0 2 704 252 0 0 0 chr1 15639798 15639826 -181555606 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 2 704 340 282 94 0 chr1 15641088 15641173 -181554259 - RLTR14 LTR ERV1 0 382 290 2 704 654 281 7 0 chr1 15641175 15641328 -181554104 - ID_B1 SINE B4 -22 202 49 2 704 354 123 0 0 chr1 15641328 15641385 -181554047 + (CGTG)n Simple_repeat Simple_repeat 1 57 0 2 704 394 256 109 0 chr1 15642714 15642851 -181552581 + MER5A1 DNA MER1_type 1 152 -14 2 704 268 24 24 24 chr1 15643719 15643761 -181551671 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 704 234 174 0 0 chr1 15643768 15643814 -181551618 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 704 624 235 77 71 chr1 15644815 15644998 -181550434 - B3A SINE B2 -14 184 1 2 704 808 207 14 14 chr1 15645093 15645240 -181550192 + B1_Mus2 SINE Alu 1 147 0 2 704 519 168 0 0 chr1 15645240 15645335 -181550097 + GA-rich Low_complexity Low_complexity 2 96 0 2 704 339 243 14 0 chr1 15645761 15645835 -181549597 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 2 704 275 318 0 0 chr1 15646542 15646605 -181548827 + ID4_ SINE ID 19 81 -2 2 704 203 300 0 0 chr1 15646614 15646664 -181548768 + G-rich Low_complexity Low_complexity 3 52 0 2 704 360 0 0 0 chr1 15647244 15647284 -181548148 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 704 2015 245 153 13 chr1 15649243 15649838 -181545594 + RMER13A LTR ERVK 1 678 -182 2 704 322 276 92 30 chr1 15649839 15649970 -181545462 + RMER13A LTR ERVK 582 720 -140 2 704 550 271 39 45 chr1 15649987 15650165 -181545267 + RMER13A LTR ERVK 684 860 0 2 704 247 349 38 45 chr1 15650469 15650601 -181544831 - MIRm SINE MIR -125 151 21 2 704 285 247 106 0 chr1 15650642 15650727 -181544705 - Lx7 LINE L1 -709 6751 6658 2 704 841 149 206 6 chr1 15650729 15650904 -181544528 - ORR1A4 LTR MaLR -1 328 119 2 704 1385 126 57 67 chr1 15650898 15651197 -181544235 - ORR1A4-int LTR MaLR -880 1083 788 2 704 336 234 73 105 chr1 15651141 15651265 -181544167 - MT2B LTR ERVL -328 273 154 2 704 786 165 335 0 chr1 15651268 15651462 -181543970 - MT2B LTR ERVL -342 259 1 2 704 6008 179 29 25 chr1 15651462 15653287 -181542145 - Lx7 LINE L1 -1028 6668 4829 2 704 930 169 30 0 chr1 15653303 15653469 -181541963 - Lx7 LINE L1 -6739 989 819 2 704 238 146 0 59 chr1 15653466 15653517 -181541915 - Lx7 LINE L1 -7654 74 27 2 704 216 346 57 9 chr1 15653629 15653734 -181541698 - MIRc SINE MIR -104 164 55 2 704 412 185 0 18 chr1 15654601 15654711 -181540721 + (TA)n Simple_repeat Simple_repeat 1 108 0 2 704 270 0 0 0 chr1 15654711 15654741 -181540691 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 704 291 287 35 0 chr1 15654856 15654943 -181540489 + GA-rich Low_complexity Low_complexity 4 93 0 2 704 198 0 0 0 chr1 15656037 15656059 -181539373 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 704 427 270 109 116 chr1 15656328 15656493 -181538939 + MLT1D LTR MaLR 3 153 -352 2 704 2166 201 45 0 chr1 15656493 15656896 -181538536 - MTC LTR MaLR 0 421 1 2 704 427 270 109 116 chr1 15656896 15657023 -181538409 + MLT1D LTR MaLR 154 293 -212 2 704 33 0 0 0 chr1 15658810 15658843 -181536589 + AT_rich Low_complexity Low_complexity 1 33 0 2 704 383 261 134 9 chr1 15660883 15660995 -181534437 - L1MC LINE L1 -2226 5656 5531 2 704 282 296 36 27 chr1 15661968 15662079 -181533353 + B3A SINE B2 87 198 0 2 704 583 273 23 8 chr1 15662886 15663019 -181532413 - RSINE1 SINE B4 -28 137 3 2 704 246 291 58 11 chr1 15663203 15663290 -181532142 + PB1 SINE Alu 1 91 -36 2 704 1902 232 105 35 chr1 15663346 15663859 -181531573 - Lx9 LINE L1 -939 6705 6157 2 704 890 176 114 55 chr1 15663847 15664118 -181531314 + Lx9 LINE L1 7357 7643 -1 2 704 489 76 0 0 chr1 15664158 15664224 -181531208 + (GGGA)n Simple_repeat Simple_repeat 1 66 0 2 704 744 306 35 41 chr1 15664334 15664648 -181530784 + Lx8 LINE L1 7160 7471 -2 2 704 396 0 0 0 chr1 15665595 15665639 -181529793 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 704 480 132 0 0 chr1 15665641 15665724 -181529708 + (TGGA)n Simple_repeat Simple_repeat 2 84 0 2 704 1860 187 77 17 chr1 15665731 15666084 -181529348 + ORR1D1 LTR MaLR 1 374 0 2 704 357 125 0 0 chr1 15666177 15666233 -181529199 + (A)n Simple_repeat Simple_repeat 1 56 0 2 704 225 0 0 0 chr1 15666942 15666967 -181528465 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2 704 192 291 159 94 chr1 15668836 15669037 -181526395 + L2c LINE L2 3141 3354 -33 2 704 21 0 0 0 chr1 15670591 15670612 -181524820 + AT_rich Low_complexity Low_complexity 1 21 0 2 704 279 79 0 0 chr1 15671215 15671253 -181524179 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 704 628 288 38 0 chr1 15671265 15671397 -181524035 - RSINE1 SINE B4 -15 150 14 2 704 3210 143 43 6 chr1 15671569 15672109 -181523323 + RMER12 LTR ERVK 1 560 -762 2 704 540 238 31 39 chr1 15672097 15672224 -181523208 + RMER12 LTR ERVK 765 890 -432 2 704 312 120 0 0 chr1 15672224 15672274 -181523158 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 704 347 270 77 164 chr1 15672274 15672383 -181523049 + RMER12 LTR ERVK 973 1082 -240 2 704 268 333 56 16 chr1 15673322 15673447 -181521985 - MIR SINE MIR -105 157 28 2 704 916 286 105 3 chr1 15674533 15674838 -181520594 - MLT1A0 LTR MaLR 0 365 30 2 704 24 0 0 0 chr1 15674878 15674902 -181520530 + AT_rich Low_complexity Low_complexity 1 24 0 2 704 1745 220 221 12 chr1 15675051 15675648 -181519784 - RMER1B Other Other -301 765 44 2 704 1014 256 66 43 chr1 15676152 15676617 -181518815 + RLTR11A2 LTR ERVK 1 502 -25 2 704 228 229 32 16 chr1 15676774 15676836 -181518596 - RMER5 LTR ERV1 -424 110 48 2 704 291 28 0 0 chr1 15676975 15677011 -181518421 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 704 34 0 0 0 chr1 15677420 15677454 -181517978 + AT_rich Low_complexity Low_complexity 1 34 0 2 704 846 30 0 0 chr1 15677852 15677953 -181517479 + (GGGAA)n Simple_repeat Simple_repeat 4 104 0 2 704 535 178 93 0 chr1 15679829 15679958 -181515474 - Lx4A LINE L1 -2 7056 6916 2 704 783 290 83 24 chr1 15680043 15680556 -181514876 + L1M2 LINE L1 5225 5777 -523 2 704 408 327 0 0 chr1 15681506 15681610 -181513822 + ORR1E LTR MaLR 5 108 -251 2 704 1855 170 82 6 chr1 15681661 15682027 -181513405 + ORR1B1 LTR MaLR 1 394 0 2 704 533 195 34 42 chr1 15682227 15682345 -181513087 + PB1D10 SINE Alu 1 117 0 2 704 259 190 81 65 chr1 15682370 15682432 -181513000 + ID4_ SINE ID 12 74 -9 2 704 1387 49 0 27 chr1 15682548 15682736 -181512696 + B2_Mm2 SINE B2 5 187 -8 2 704 6081 51 63 0 chr1 15682826 15683647 -181511785 + L1_Mus1 LINE L1 5695 6567 0 2 704 445 223 24 40 chr1 15683793 15683919 -181511513 + Lx5 LINE L1 6921 7044 -6 2 704 447 317 137 21 chr1 15683919 15684109 -181511323 + B4 SINE B4 81 292 0 2 704 23 54 0 0 chr1 15684146 15684183 -181511249 + AT_rich Low_complexity Low_complexity 1 37 0 2 704 1221 61 0 0 chr1 15684209 15684356 -181511076 + B1_Mm SINE Alu 1 147 0 2 704 189 0 0 0 chr1 15684959 15684980 -181510452 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 704 198 312 47 118 chr1 15685802 15685929 -181509503 - MER5A DNA MER1_type -51 138 21 2 704 4030 83 34 11 chr1 15686618 15687179 -181508253 + L1_Mus2 LINE L1 5993 6566 0 2 704 396 307 26 19 chr1 15688732 15688888 -181506544 + B3A SINE B2 36 192 -6 2 704 1418 89 0 5 chr1 15689134 15689327 -181506105 + B2_Mm2 SINE B2 1 192 -3 2 704 1135 72 0 38 chr1 15689337 15689497 -181505935 + B2_Mm2 SINE B2 28 181 -14 2 704 303 359 50 35 chr1 15689886 15690088 -181505344 - MIRc SINE MIR -31 237 33 2 704 234 314 43 0 chr1 15690304 15690374 -181505058 + ID4 SINE ID 1 73 -10 2 704 21 0 0 0 chr1 15690390 15690411 -181505021 + AT_rich Low_complexity Low_complexity 1 21 0 2 704 240 35 0 0 chr1 15690853 15690882 -181504550 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 704 1008 154 0 0 chr1 15690882 15691057 -181504375 + GA-rich Low_complexity Low_complexity 2 176 0 2 704 195 42 0 0 chr1 15691058 15691082 -181504350 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 2 704 293 0 0 26 chr1 15691434 15691472 -181503960 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 704 318 291 23 0 chr1 15692150 15692236 -181503196 + PB1D10 SINE Alu 1 88 -29 2 704 341 303 9 52 chr1 15692353 15692468 -181502964 + ID_B1 SINE B4 112 221 -3 2 704 1241 112 21 0 chr1 15693412 15693600 -181501832 + B2_Mm2 SINE B2 3 194 -1 2 704 2018 72 0 8 chr1 15693772 15694038 -181501394 - L1Md_F2 LINE L1 -12 6570 6307 2 704 355 242 242 0 chr1 15694183 15694303 -181501129 + B1F1 SINE Alu 1 149 0 2 704 564 244 78 63 chr1 15694656 15695054 -181500378 - Lx7 LINE L1 -19 7677 7168 3 704 3074 45 36 8 chr1 15695054 15695439 -181499993 - MTA_Mm LTR MaLR 0 396 1 3 704 5494 62 12 94 chr1 15695439 15696319 -181499113 - MTA_Mm-int LTR MaLR 0 1098 291 3 704 552 128 0 53 chr1 15696322 15696511 -181498921 + T-rich Low_complexity Low_complexity 1 179 0 3 704 2149 74 28 28 chr1 15696539 15696559 -181498873 - MTA_Mm-int LTR MaLR -780 318 307 3 704 963 88 81 0 chr1 15696559 15696695 -181498737 - B1_Mm SINE Alu 0 147 1 3 704 2149 74 28 28 chr1 15696695 15696992 -181498440 - MTA_Mm-int LTR MaLR -792 306 1 3 704 2977 74 5 15 chr1 15696992 15697392 -181498040 - MTA_Mm LTR MaLR 0 396 1 3 704 380 252 149 7 chr1 15697392 15697540 -181497892 - Lx7 LINE L1 -524 7172 7004 3 704 707 231 47 57 chr1 15697541 15697734 -181497698 - B3A SINE B2 -6 192 2 3 704 1741 10 0 0 chr1 15697791 15697983 -181497449 + B2_Mm1a SINE B2 1 192 -1 3 704 332 349 60 0 chr1 15698677 15698826 -181496606 - MIR SINE MIR -77 185 28 3 704 263 258 30 61 chr1 15704229 15704328 -181491104 - Charlie16a DNA MER1_type -104 238 143 3 704 345 274 27 0 chr1 15704659 15704732 -181490700 + ID4_ SINE ID 8 82 -1 3 704 23 0 0 0 chr1 15705914 15705937 -181489495 + AT_rich Low_complexity Low_complexity 1 23 0 3 704 244 213 76 51 chr1 15705937 15706016 -181489416 + ID4_ SINE ID 3 83 0 3 704 674 82 10 0 chr1 15706352 15706450 -181488982 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 3 704 239 317 16 31 chr1 15706451 15706470 -181488962 + polypurine Low_complexity Low_complexity 2 20 0 3 704 413 269 61 8 chr1 15706470 15706601 -181488831 + B1F SINE Alu 5 142 -7 3 704 254 326 11 0 chr1 15706601 15706653 -181488779 + polypurine Low_complexity Low_complexity 1 53 0 3 704 534 226 51 7 chr1 15706653 15706791 -181488641 + B1F2 SINE Alu 1 144 -5 3 704 239 317 16 31 chr1 15706791 15706845 -181488587 + polypurine Low_complexity Low_complexity 75 126 0 3 704 216 0 0 0 chr1 15707089 15707113 -181488319 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 704 24 32 0 0 chr1 15710395 15710426 -181485006 + AT_rich Low_complexity Low_complexity 1 31 0 3 704 766 264 17 0 chr1 15714111 15714285 -181481147 + B3A SINE B2 5 181 -17 3 704 267 31 0 0 chr1 15714293 15714325 -181481107 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 704 27 62 0 0 chr1 15714336 15714384 -181481048 + AT_rich Low_complexity Low_complexity 1 48 0 3 704 334 295 172 37 chr1 15714511 15714645 -181480787 + MER45A DNA Tip100 1 152 -26 3 704 374 271 94 8 chr1 15714709 15714857 -181480575 - MIR SINE MIR -53 215 45 3 704 450 0 0 0 chr1 15715697 15715747 -181479685 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 704 193 259 37 0 chr1 15716639 15716693 -181478739 - L2c LINE L2 -46 3341 3286 3 704 365 360 100 4 chr1 15717010 15717269 -181478163 + L3b LINE CR1 195 478 -4 3 704 264 88 35 17 chr1 15717290 15717348 -181478084 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 704 588 232 107 56 chr1 15717757 15717953 -181477479 + B3 SINE B2 1 206 -10 3 704 241 365 61 94 chr1 15719053 15719298 -181476134 - ORR1E LTR MaLR -68 291 55 3 704 274 321 9 28 chr1 15719330 15719439 -181475993 - MLT1A1 LTR MaLR -300 108 2 3 704 4785 144 30 73 chr1 15719522 15720465 -181474967 - RLTR13D6 LTR ERVK 0 902 1 3 704 846 47 0 0 chr1 15720494 15720601 -181474831 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 3 704 6831 84 27 9 chr1 15720620 15722385 -181473047 - L1VL2 LINE L1 -1610 2005 206 3 704 633 263 7 21 chr1 15722422 15722562 -181472870 + ID_B1 SINE B4 85 222 -2 3 704 259 269 109 51 chr1 15722439 15722576 -181472856 - YREP_Mm Unknown Unknown -1516 296 152 3 704 426 264 97 24 chr1 15722605 15722853 -181472579 - Arthur1B DNA Tip100 -117 1108 843 3 704 497 147 0 97 chr1 15722930 15723043 -181472389 + MT2B LTR ERVL 156 257 -344 3 704 782 58 0 0 chr1 15722944 15723048 -181472384 + B1_Mus1 SINE Alu 5 108 -40 3 704 253 264 7 107 chr1 15722972 15723112 -181472320 - RMER17A LTR ERVK -278 473 348 3 704 12340 99 8 9 chr1 15723654 15726157 -181469275 - L1_Mus2 LINE L1 -1 6565 4066 3 704 3249 101 14 2 chr1 15726163 15726657 -181468775 - L1VL1 LINE L1 -508 3190 2691 3 10 42238 7 0 1 chr1 15726663 15733660 -181461772 - L1Md_A LINE L1 0 6582 1 3 705 11831 112 6 26 chr1 15733665 15736436 -181458996 - L1VL1 LINE L1 -991 2707 1 3 705 315 324 17 54 chr1 15736517 15736748 -181458684 - L1M4b LINE L1 -4587 2515 2276 3 705 252 211 19 0 chr1 15736777 15736829 -181458603 - L1M4b LINE L1 -5134 2200 2148 3 705 542 51 13 0 chr1 15736836 15736914 -181458518 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 705 294 29 0 0 chr1 15736939 15736974 -181458458 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 3 705 409 328 74 7 chr1 15736974 15737100 -181458332 - B1F1 SINE Alu -13 136 1 3 705 514 235 68 34 chr1 15737188 15737364 -181458068 + RCHARR1 DNA MER1_type 289 470 -504 3 705 770 185 98 15 chr1 15737360 15737563 -181457869 + RCHARR1 DNA MER1_type 754 973 -1 3 705 1934 144 66 3 chr1 15737569 15737889 -181457543 + Lx6 LINE L1 6267 6606 -854 3 705 1134 204 23 0 chr1 15737894 15738114 -181457318 + Lx6 LINE L1 6818 7042 -418 3 705 807 88 0 0 chr1 15738121 15738234 -181457198 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 3 705 1248 56 0 0 chr1 15738694 15738836 -181456596 + B1_Mus1 SINE Alu 1 142 -6 3 705 229 26 0 50 chr1 15738838 15738878 -181456554 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 3 705 1415 166 83 22 chr1 15738969 15739246 -181456186 + Lx7 LINE L1 7026 7319 -377 3 705 558 54 0 0 chr1 15739295 15739369 -181456063 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 705 290 255 49 39 chr1 15739409 15739511 -181455921 + Lx7 LINE L1 7535 7637 -59 3 705 436 159 36 24 chr1 15739517 15739601 -181455831 + RLTR14 LTR ERV1 298 382 0 3 705 371 220 99 0 chr1 15739937 15740028 -181455404 + PB1 SINE Alu 21 120 -7 3 705 414 0 0 0 chr1 15740335 15740381 -181455051 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 3 705 359 218 0 10 chr1 15740731 15740833 -181454599 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 705 2124 145 100 14 chr1 15741087 15741218 -181454214 - RLTR14 LTR ERV1 0 382 243 3 705 465 19 0 0 chr1 15741218 15741272 -181454160 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 705 2124 145 100 14 chr1 15741272 15741490 -181453942 - RLTR14 LTR ERV1 -140 242 3 3 705 584 237 171 53 chr1 15741620 15741964 -181453468 + MT2C_Mm LTR ERVL 5 432 -61 3 705 693 282 59 27 chr1 15742627 15742846 -181452586 + MTEa LTR MaLR 3 228 -151 3 705 558 253 20 10 chr1 15742886 15743022 -181452410 + MTD LTR MaLR 1 162 -257 3 705 1242 95 6 0 chr1 15743053 15743222 -181452210 + B2_Mm1a SINE B2 2 171 -22 3 705 386 117 0 32 chr1 15743258 15743320 -181452112 + B2_Mm2 SINE B2 47 106 -89 3 705 723 142 0 0 chr1 15743365 15743485 -181451947 + (GGGA)n Simple_repeat Simple_repeat 3 122 0 3 705 834 231 80 14 chr1 15743485 15743700 -181451732 + MTD LTR MaLR 182 417 -2 3 705 381 248 83 33 chr1 15743994 15744115 -181451317 + ID_B1 SINE B4 79 205 -19 3 705 207 0 0 0 chr1 15744119 15744142 -181451290 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 705 314 304 22 0 chr1 15744510 15744602 -181450830 + PB1D10 SINE Alu 24 117 0 3 705 3812 182 77 28 chr1 15744741 15745591 -181449841 - RLTR13B1 LTR ERVK 0 893 3 3 705 2536 80 0 15 chr1 15745626 15745958 -181449474 - L1_Mus4 LINE L1 0 6636 6310 3 705 5772 84 20 8 chr1 15745958 15745987 -181449445 - L1VL4 LINE L1 -735 2824 2791 3 705 225 0 0 0 chr1 15745987 15746012 -181449420 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 705 5772 84 20 8 chr1 15746012 15746825 -181448607 - L1VL4 LINE L1 -769 2790 1973 3 705 4477 123 36 10 chr1 15746811 15747700 -181447732 - L1VL4 LINE L1 -2470 1089 173 3 705 324 0 0 0 chr1 15747866 15747902 -181447530 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 705 955 240 0 15 chr1 15748286 15748489 -181446943 + RMER1B Other Other 44 243 -823 3 705 2320 239 61 20 chr1 15748525 15749849 -181445583 + RMER1B Other Other 1 1033 -33 3 705 378 0 0 0 chr1 15749849 15749891 -181445541 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 705 333 0 0 0 chr1 15749891 15749928 -181445504 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 3 705 283 283 50 58 chr1 15749928 15749952 -181445480 + RMER1C Other Other 1306 1323 -19 3 705 560 223 187 64 chr1 15750353 15750588 -181444844 - RLTR10A LTR ERVK -13 398 135 3 705 585 164 14 0 chr1 15750735 15750840 -181444592 + ORR1A2 LTR MaLR 152 302 -92 3 705 419 0 20 0 chr1 15750952 15751003 -181444429 + (TAG)n Simple_repeat Simple_repeat 2 53 0 3 705 812 106 129 0 chr1 15751003 15751135 -181444297 - B2_Mm1t SINE B2 -44 149 1 3 705 564 55 0 0 chr1 15751150 15751223 -181444209 + L1_Mus1 LINE L1 6495 6567 0 3 705 25 51 0 0 chr1 15751226 15751265 -181444167 + AT_rich Low_complexity Low_complexity 1 39 0 3 705 33874 67 1 4 chr1 15751320 15756557 -181438875 + L1Md_F2 LINE L1 272 5589 -297 3 705 8446 51 4 4 chr1 15756557 15757553 -181437879 + L1Md_F2 LINE L1 5590 6585 0 3 705 25 75 0 0 chr1 15757630 15757683 -181437749 + AT_rich Low_complexity Low_complexity 1 53 0 3 705 281 280 196 8 chr1 15757788 15757804 -181437628 + ID SINE ID 60 75 -149 3 705 368 280 93 0 chr1 15757804 15757911 -181437521 + PB1D7 SINE Alu 1 117 -3 3 705 281 280 196 8 chr1 15757911 15758027 -181437405 + ID_B1 SINE B4 76 217 -7 3 705 1989 91 23 11 chr1 15758027 15758293 -181437139 + L1_Mus2 LINE L1 6298 6566 0 3 705 361 265 82 29 chr1 15758751 15758922 -181436510 + L1MCb LINE L1 13 192 -5853 3 705 499 271 167 64 chr1 15759767 15760031 -181435401 + B4A SINE B4 2 292 0 3 705 480 243 19 0 chr1 15761109 15761216 -181434216 + MER5A1 DNA MER1_type 58 166 0 3 705 296 344 12 38 chr1 15761266 15761426 -181434006 + GA-rich Low_complexity Low_complexity 2 157 0 3 705 183 206 0 0 chr1 15761431 15761465 -181433967 - MIR SINE MIR 0 262 229 3 705 2373 85 3 0 chr1 15761998 15762314 -181433118 + ORR1A2 LTR MaLR 11 327 0 3 705 801 115 16 54 chr1 15763029 15763213 -181432219 + GA-rich Low_complexity Low_complexity 3 179 0 3 705 660 87 0 0 chr1 15763254 15763346 -181432086 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 3 705 4917 132 60 34 chr1 15763478 15764334 -181431098 + MERVK26-int LTR ERVK 33 910 -6009 3 705 4928 172 23 1 chr1 15764328 15765148 -181430284 + MERVK26-int LTR ERVK 1115 1952 -4967 3 705 608 136 14 64 chr1 15765141 15765282 -181430150 + MERVK26-int LTR ERVK 4826 4959 -1960 3 705 3224 149 26 2 chr1 15765294 15765785 -181429647 + MERVK26-int LTR ERVK 6059 6561 -358 3 705 251 299 29 76 chr1 15766090 15766195 -181429237 - ORR1D2 LTR MaLR -263 107 8 3 705 307 282 13 13 chr1 15766884 15766963 -181428469 + ID4 SINE ID 2 80 -3 3 705 266 288 163 27 chr1 15768210 15768441 -181426991 + MLT1H1 LTR MaLR 13 283 -266 3 705 253 246 18 0 chr1 15768574 15768631 -181426801 + MLT1H1 LTR MaLR 482 539 -16 3 705 246 284 163 41 chr1 15768735 15768882 -181426550 + MIR SINE MIR 8 172 -90 4 705 388 268 144 0 chr1 15769403 15769500 -181425932 + RSINE1 SINE B4 2 112 -53 4 705 1159 89 7 0 chr1 15769916 15770062 -181425370 + B1_Mus2 SINE Alu 1 147 0 4 705 542 313 103 78 chr1 15770113 15770473 -181424959 - MLT1A LTR MaLR -2 372 4 4 705 751 223 33 79 chr1 15770563 15770777 -181424655 - RMER10B LTR ERVL 0 398 195 4 705 207 246 0 0 chr1 15770777 15770834 -181424598 + GA-rich Low_complexity Low_complexity 2 58 0 4 705 1169 176 108 0 chr1 15771223 15771427 -181424005 + URR1A DNA MER1_type 1 226 0 4 705 730 323 102 40 chr1 15771461 15771835 -181423597 + MLT1G1 LTR MaLR 178 574 -5 4 705 1982 166 133 13 chr1 15772881 15773332 -181422100 - RMER6C LTR ERVK 0 690 186 4 705 376 100 0 0 chr1 15773331 15773381 -181422051 - RMER6C LTR ERVK -670 50 1 4 705 381 282 53 27 chr1 15773595 15773769 -181421663 - MTEa LTR MaLR -11 368 170 4 705 266 333 29 39 chr1 15773910 15774013 -181421419 - MLT1A LTR MaLR -253 121 20 4 705 662 231 8 0 chr1 15774030 15774151 -181421281 + B1F2 SINE Alu 1 122 -27 4 705 221 216 20 0 chr1 15774317 15774368 -181421064 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 4 705 444 37 0 0 chr1 15774368 15774422 -181421010 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 705 861 141 15 0 chr1 15774436 15774571 -181420861 - B1_Mur4 SINE Alu 0 150 14 4 705 320 229 0 143 chr1 15774471 15774583 -181420849 - MT2B LTR ERVL -337 264 169 4 705 378 290 48 77 chr1 15774959 15775127 -181420305 - Charlie10 DNA MER1_type -2566 256 94 4 705 580 274 37 0 chr1 15775120 15775255 -181420177 + ID_B1 SINE B4 79 218 -6 4 705 738 308 67 0 chr1 15775368 15775576 -181419856 + ID_B1 SINE B4 3 224 0 4 705 829 233 11 11 chr1 15775583 15775736 -181419696 + B3 SINE B2 1 152 -64 4 705 1191 72 0 0 chr1 15775736 15775916 -181419516 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 705 829 233 12 15 chr1 15775916 15775937 -181419495 + B3 SINE B2 142 173 -43 4 705 1107 86 0 0 chr1 15775937 15776148 -181419284 + (CA)n Simple_repeat Simple_repeat 1 211 0 4 705 584 243 14 91 chr1 15776148 15776178 -181419254 + B2_Mm2 SINE B2 164 192 -3 4 705 1256 68 0 0 chr1 15776180 15776326 -181419106 + B1_Mus1 SINE Alu 2 147 -1 4 705 198 0 0 0 chr1 15776326 15776348 -181419084 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 705 189 0 0 0 chr1 15776445 15776466 -181418966 + (T)n Simple_repeat Simple_repeat 1 21 0 4 705 1336 34 0 0 chr1 15776466 15776613 -181418819 - B1_Mm SINE Alu 0 147 1 4 705 487 256 137 147 chr1 15776689 15776886 -181418546 - B3A SINE B2 -3 195 1 4 705 291 328 63 16 chr1 15776887 15777014 -181418418 + MIRb SINE MIR 1 133 -135 4 705 257 273 0 70 chr1 15777157 15777228 -181418204 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 705 825 265 73 20 chr1 15777821 15778025 -181417407 - ID_B1 SINE B4 -4 220 6 4 705 279 0 0 0 chr1 15778097 15778128 -181417304 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 705 233 274 0 0 chr1 15778156 15778207 -181417225 - PB1 SINE Alu -66 61 11 4 705 648 0 0 0 chr1 15778518 15778590 -181416842 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 4 705 474 225 154 0 chr1 15778755 15778924 -181416508 + B3 SINE B2 19 213 -3 4 705 235 255 50 69 chr1 15779211 15779371 -181416061 + HAL1 LINE L1 1395 1551 -956 4 705 195 42 0 0 chr1 15779676 15779700 -181415732 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 705 786 199 15 0 chr1 15779700 15779836 -181415596 - B1_Mur2 SINE Alu -10 139 2 4 705 2049 84 39 0 chr1 15779860 15780171 -181415261 - L1_Mm LINE L1 -2365 3518 3196 4 705 249 307 101 0 chr1 15780219 15780307 -181415125 + ID4 SINE ID 12 106 -46 4 705 292 254 115 115 chr1 15780369 15780525 -181414907 - MTE2b LTR MaLR -220 159 4 4 705 243 0 0 0 chr1 15780664 15780691 -181414741 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 705 643 311 49 11 chr1 15780705 15780890 -181414542 + B4A SINE B4 1 192 -100 4 705 424 133 80 0 chr1 15780878 15780953 -181414479 - ORR1B1 LTR MaLR -7 387 307 4 705 380 160 40 13 chr1 15780951 15781027 -181414405 - ORR1B1 LTR MaLR -312 82 5 4 705 361 161 276 0 chr1 15781037 15781124 -181414308 + B4A SINE B4 178 288 -4 4 705 233 57 0 28 chr1 15781127 15781163 -181414269 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 705 450 304 0 36 chr1 15781179 15781319 -181414113 + B1F2 SINE Alu 1 135 -14 4 705 552 303 45 0 chr1 15781334 15781489 -181413943 + RSINE1 SINE B4 4 165 0 4 705 186 133 0 0 chr1 15781533 15781563 -181413869 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 4 705 2145 89 41 3 chr1 15781649 15781964 -181413468 + RMER17B LTR ERVK 1 327 -631 4 705 1738 159 18 106 chr1 15782402 15782873 -181412559 - RMER17C LTR ERVK -517 441 21 4 705 499 151 34 0 chr1 15782947 15783066 -181412366 + (TATG)n Simple_repeat Simple_repeat 2 124 0 4 705 1214 175 28 17 chr1 15783792 15784199 -181411233 + RLTR11A2 LTR ERVK 13 527 0 4 705 2818 16 0 3 chr1 15784555 15784878 -181410554 - RLTRETN_Mm LTR ERVK 0 322 1 4 705 270 274 254 9 chr1 15784881 15784906 -181410526 + B1F2 SINE Alu 8 149 0 4 705 331 256 22 34 chr1 15784906 15784995 -181410437 + ID_B1 SINE B4 136 223 -1 4 705 217 353 29 0 chr1 15786212 15786314 -181409118 - MIR SINE MIR -21 241 137 4 705 295 364 61 39 chr1 15786913 15787142 -181408290 + MIR SINE MIR 21 254 -8 4 705 212 357 47 23 chr1 15787236 15787322 -181408110 + 7SLRNA srpRNA srpRNA 1 88 -226 4 705 22 0 0 0 chr1 15787343 15787365 -181408067 + AT_rich Low_complexity Low_complexity 1 22 0 4 705 515 245 357 19 chr1 15787365 15787613 -181407819 + MLT1A1 LTR MaLR 75 406 -2 4 705 3915 230 54 15 chr1 15787708 15788582 -181406850 + Lx5 LINE L1 6143 7050 0 4 705 222 274 110 0 chr1 15788652 15788725 -181406707 - ID4_ SINE ID -1 82 2 4 705 332 280 67 39 chr1 15788725 15788828 -181406604 - B4A SINE B4 -106 186 81 4 705 633 282 32 22 chr1 15788906 15789091 -181406341 + B4A SINE B4 1 187 -105 4 705 270 335 59 113 chr1 15789295 15789551 -181405881 + RMER4A LTR ERVK 27 268 -198 4 705 904 222 198 99 chr1 15791125 15791251 -181404181 - MT2A LTR ERVL -44 489 362 4 705 6121 63 15 27 chr1 15791251 15791733 -181403699 + RLTR13C2 LTR ERVK 1 477 -331 4 705 1573 47 5 0 chr1 15791733 15791924 -181403508 - B2_Mm1t SINE B2 0 193 2 4 705 6121 63 15 27 chr1 15791924 15792259 -181403173 + RLTR13C2 LTR ERVK 478 808 0 4 705 904 222 198 99 chr1 15792259 15792577 -181402855 - MT2A LTR ERVL -172 361 1 4 705 259 176 14 42 chr1 15792941 15792973 -181402459 - RLTR11B LTR ERVK -313 140 111 4 705 1848 126 24 67 chr1 15792973 15793314 -181402118 - ORR1A2 LTR MaLR -1 326 1 4 705 259 176 14 42 chr1 15793314 15793352 -181402080 - RLTR11B LTR ERVK -343 110 73 4 705 1320 205 52 57 chr1 15793352 15793686 -181401746 + RLTR11A2 LTR ERVK 162 491 -36 4 705 4363 116 22 44 chr1 15793686 15794454 -181400978 - RMER17A LTR ERVK 0 751 1 4 705 1320 205 52 57 chr1 15794454 15794487 -181400945 + RLTR11A2 LTR ERVK 492 527 0 4 705 4089 60 42 11 chr1 15794526 15795069 -181400363 - LTRIS2 LTR ERV1 0 564 5 4 705 367 317 13 82 chr1 15795093 15795251 -181400181 + MER5A DNA MER1_type 2 148 -41 4 705 487 229 54 27 chr1 15795369 15795481 -181399951 - ID_B1 SINE B4 -22 202 88 4 705 484 265 165 103 chr1 15796308 15796581 -181398851 + B4 SINE B4 3 292 0 4 705 549 209 19 9 chr1 15796521 15796627 -181398805 + B3 SINE B2 110 216 0 4 705 994 47 0 0 chr1 15796785 15796913 -181398519 + B1_Mm SINE Alu 18 145 -2 4 705 559 265 131 30 chr1 15797244 15797617 -181397815 - MT2A LTR ERVL -127 474 4 4 705 27 49 0 0 chr1 15797679 15797720 -181397712 + AT_rich Low_complexity Low_complexity 1 41 0 4 705 32 57 0 0 chr1 15797822 15797875 -181397557 + AT_rich Low_complexity Low_complexity 1 53 0 4 705 226 268 0 35 chr1 15797995 15798053 -181397379 - MER5A DNA MER1_type 0 189 134 4 705 184 269 77 0 chr1 15798082 15798134 -181397298 - MER5A DNA MER1_type -133 56 1 4 705 448 292 15 40 chr1 15798641 15798839 -181396593 - RMER15 LTR ERVL -157 418 309 4 705 242 241 134 37 chr1 15799425 15799589 -181395843 - MER33 DNA MER1_type -8 316 137 4 705 323 232 40 50 chr1 15799766 15799866 -181395566 - B1F1 SINE Alu -50 99 1 4 705 805 275 92 20 chr1 15800283 15800729 -181394703 - L1M2 LINE L1 -1459 4684 4207 4 705 1060 64 50 7 chr1 15800892 15801033 -181394399 - B1_Mus2 SINE Alu 0 147 1 4 705 3094 159 57 40 chr1 15801054 15801723 -181393709 + RMER6C LTR ERVK 1 680 -10 4 705 502 209 75 9 chr1 15802083 15802189 -181393243 - PB1D7 SINE Alu 0 120 8 4 705 228 300 0 62 chr1 15802505 15802569 -181392863 + B4A SINE B4 78 137 -155 4 705 189 0 0 0 chr1 15802608 15802629 -181392803 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 4 705 527 246 20 34 chr1 15802629 15802776 -181392656 + B1_Mus1 SINE Alu 3 147 -1 4 705 1276 7 7 0 chr1 15802857 15803003 -181392429 + B1_Mm SINE Alu 1 147 0 4 705 344 186 90 34 chr1 15803283 15803339 -181392093 - MTEa LTR MaLR 0 379 319 4 705 607 211 63 2 chr1 15803339 15803515 -181391917 + B3A SINE B2 1 191 -25 4 705 714 282 81 23 chr1 15803521 15803779 -181391653 - MTEb LTR MaLR -26 353 81 4 705 239 233 0 0 chr1 15804130 15804173 -181391259 - tRNA-Ala-GCA tRNA tRNA -7 68 26 4 705 2267 182 69 89 chr1 15804532 15805552 -181389880 - RLTR13D1 LTR ERVK 0 978 1 4 705 258 263 82 73 chr1 15806140 15806324 -181389108 - MER33 DNA MER1_type -117 207 2 4 705 285 360 0 9 chr1 15806381 15806493 -181388939 - PB1D10 SINE Alu -3 114 4 4 705 558 0 0 0 chr1 15806751 15806813 -181388619 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 4 705 233 264 38 133 chr1 15806984 15807089 -181388343 + PB1D10 SINE Alu 15 109 -8 5 705 344 291 123 19 chr1 15808346 15808472 -181386960 + B4A SINE B4 7 144 -80 5 705 25 65 0 0 chr1 15808920 15808966 -181386466 + AT_rich Low_complexity Low_complexity 1 46 0 5 705 446 303 124 7 chr1 15809320 15809473 -181385959 - B3A SINE B2 -25 173 3 5 705 216 0 0 0 chr1 15810004 15810028 -181385404 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5 705 1236 57 6 0 chr1 15810028 15810186 -181385246 - B2_Mm1t SINE B2 -33 160 2 5 705 339 336 20 60 chr1 15810598 15810747 -181384685 - ID_B1 SINE B4 0 224 82 5 705 383 240 110 46 chr1 15810764 15810873 -181384559 - RSINE1 SINE B4 -39 126 11 5 705 1240 221 64 59 chr1 15811926 15812206 -181383226 - Lx7 LINE L1 -2 7694 7401 5 705 186 71 0 0 chr1 15812206 15812234 -181383198 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 705 1240 221 306 31 chr1 15812234 15812567 -181382865 - Lx7 LINE L1 -296 7400 6988 5 705 1069 108 0 0 chr1 15812578 15812726 -181382706 - B1_Mus1 SINE Alu 0 148 1 5 705 15340 152 157 8 chr1 15812747 15818083 -181377349 - L1_Mus1 LINE L1 0 6567 380 5 705 1174 195 72 0 chr1 15818083 15818334 -181377098 - Lx7 LINE L1 -702 6994 6726 5 705 3910 156 109 12 chr1 15818359 15819205 -181376227 - RLTR25B LTR ERVK -2 1026 1 5 705 1690 215 139 41 chr1 15819219 15820052 -181375380 - Lx7 LINE L1 -1001 6695 5781 5 705 385 309 65 0 chr1 15820080 15820219 -181375213 + Tigger7 DNA MER2_type 200 347 -2144 5 705 225 391 11 0 chr1 15820217 15820304 -181375128 - ID_B1 SINE B4 -55 169 82 5 705 226 267 0 0 chr1 15820354 15820399 -181375033 + B4A SINE B4 85 129 -163 5 705 281 188 0 59 chr1 15820361 15820412 -181375020 + PB1D7 SINE Alu 7 54 -66 5 705 567 188 158 25 chr1 15820508 15820628 -181374804 - B1_Mur1 SINE Alu 0 149 14 5 705 718 332 14 14 chr1 15820652 15820869 -181374563 + ID_B1 SINE B4 8 224 0 5 705 180 0 0 0 chr1 15821016 15821036 -181374396 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 705 323 295 62 41 chr1 15822181 15822326 -181373106 - MT2B LTR ERVL -279 322 175 5 705 635 217 67 0 chr1 15822207 15822327 -181373105 - B1F1 SINE Alu -12 137 10 5 705 297 253 25 0 chr1 15822453 15822532 -181372900 + ID4 SINE ID 1 81 -2 5 705 708 206 31 57 chr1 15822863 15823054 -181372378 + B3 SINE B2 3 190 -5 5 705 484 269 209 11 chr1 15823752 15823929 -181371503 + MER82 DNA MER2_type 51 262 -391 5 705 23 33 0 0 chr1 15823992 15824022 -181371410 + AT_rich Low_complexity Low_complexity 1 30 0 5 705 1070 74 0 51 chr1 15824242 15824398 -181371034 - B1_Mus1 SINE Alu 0 148 1 5 705 223 393 12 0 chr1 15824400 15824484 -181370948 - PB1D10 SINE Alu -32 85 1 5 705 1284 83 55 0 chr1 15824711 15824892 -181370540 + B2_Mm1t SINE B2 1 191 -2 5 705 339 288 26 7 chr1 15825090 15825244 -181370188 - L1MD LINE L1 -3201 2945 2789 5 705 426 291 100 0 chr1 15825299 15825409 -181370023 - RSINE1 SINE B4 -43 122 2 5 705 366 289 39 58 chr1 15825413 15825670 -181369762 - L1MCa LINE L1 -3396 2925 2674 5 705 363 114 13 21 chr1 15826111 15826215 -181369217 - B2_Mm2 SINE B2 -7 188 47 5 705 1001 112 56 0 chr1 15826262 15826423 -181369009 - B2_Mm1t SINE B2 -14 179 10 5 705 728 224 7 13 chr1 15826657 15826806 -181368626 + B1F2 SINE Alu 1 148 -1 5 705 1175 61 0 0 chr1 15826810 15826957 -181368475 + B1_Mm SINE Alu 1 147 0 5 705 198 0 0 0 chr1 15826957 15826979 -181368453 + (A)n Simple_repeat Simple_repeat 1 22 0 5 705 2718 33 0 0 chr1 15827168 15827502 -181367930 - L1Md_F2 LINE L1 -662 5920 5587 5 705 3463 77 27 2 chr1 15827518 15827999 -181367433 + L1Md_F2 LINE L1 6090 6582 0 5 705 1089 102 0 0 chr1 15828018 15828165 -181367267 + B1_Mus1 SINE Alu 2 148 0 5 705 810 168 15 0 chr1 15828542 15828673 -181366759 - B1_Mus1 SINE Alu -5 143 11 5 705 543 345 105 56 chr1 15829232 15829717 -181365715 - L1MCa LINE L1 -5806 702 194 5 705 434 276 97 0 chr1 15829732 15829752 -181365680 - B1F SINE Alu -2 147 4 5 705 485 288 0 0 chr1 15829752 15829863 -181365569 - ID_B1 SINE B4 -23 201 91 5 705 21 0 0 0 chr1 15830294 15830315 -181365117 + AT_rich Low_complexity Low_complexity 1 21 0 5 705 240 111 0 0 chr1 15830336 15830372 -181365060 + (T)n Simple_repeat Simple_repeat 1 36 0 5 705 4287 125 63 44 chr1 15830799 15831593 -181363839 - RMER17D2 LTR ERVK 0 809 1 5 705 562 226 15 53 chr1 15831676 15831807 -181363625 - B3A SINE B2 -67 131 6 5 705 548 248 106 10 chr1 15831808 15832016 -181363416 - L1MB3 LINE L1 -50 6133 5906 5 705 825 250 11 1 chr1 15832039 15832205 -181363227 - B3 SINE B2 -6 192 21 5 705 312 288 156 5 chr1 15832224 15832416 -181363016 - L1MB3 LINE L1 -278 5902 5682 5 705 21 36 0 0 chr1 15832872 15832900 -181362532 + AT_rich Low_complexity Low_complexity 1 28 0 5 705 272 48 24 0 chr1 15833309 15833351 -181362081 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 705 1163 55 7 0 chr1 15833845 15833990 -181361442 + B1_Mus2 SINE Alu 2 147 0 5 705 183 80 0 0 chr1 15834484 15834509 -181360923 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 705 429 141 0 0 chr1 15834509 15834580 -181360852 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 705 183 100 0 0 chr1 15834880 15834910 -181360522 + (T)n Simple_repeat Simple_repeat 1 30 0 5 705 1199 54 0 0 chr1 15834910 15835057 -181360375 - B1_Mus2 SINE Alu 0 147 1 5 705 21 0 0 0 chr1 15835334 15835355 -181360077 + AT_rich Low_complexity Low_complexity 1 21 0 5 705 229 268 209 16 chr1 15835596 15835725 -181359707 - MER89 LTR ERV1 -254 305 152 5 705 611 325 17 132 chr1 15835870 15836172 -181359260 - B4A SINE B4 -14 278 12 5 705 7669 72 4 11 chr1 15836638 15837852 -181357580 - L1_Mus1 LINE L1 0 6654 5372 5 705 265 239 16 9 chr1 15838275 15838366 -181357066 - LTR41 LTR ERVL -705 90 1 5 705 404 215 3 8 chr1 15839303 15839395 -181356037 + B1F SINE Alu 17 106 -11 5 705 22 0 0 0 chr1 15839424 15839446 -181355986 + AT_rich Low_complexity Low_complexity 1 22 0 5 705 819 248 30 20 chr1 15840017 15840219 -181355213 + B3 SINE B2 6 209 -7 5 705 657 269 64 0 chr1 15840239 15840410 -181355022 + B3A SINE B2 2 183 -15 5 705 1379 83 10 10 chr1 15840523 15840718 -181354714 + B2_Mm2 SINE B2 1 195 0 5 705 392 241 0 11 chr1 15840756 15840844 -181354588 - PB1D10 SINE Alu -29 88 2 5 705 628 232 51 13 chr1 15840894 15841051 -181354381 + ORR1E LTR MaLR 1 163 -196 5 705 263 225 96 53 chr1 15841077 15841171 -181354261 + ORR1E LTR MaLR 256 353 -6 5 705 2370 163 71 9 chr1 15841259 15841723 -181353709 - RLTR20A1 LTR ERVK -58 493 1 5 705 338 372 7 7 chr1 15841723 15841865 -181353567 + ORR1E LTR MaLR 51 192 -167 5 705 1077 85 7 0 chr1 15841905 15842046 -181353386 + B1_Mus1 SINE Alu 2 143 -5 5 705 451 317 98 26 chr1 15842870 15843259 -181352173 - HAL1 LINE L1 -700 1807 1391 5 705 628 279 87 6 chr1 15843810 15843983 -181351449 + ID_B1 SINE B4 17 203 -21 5 705 486 248 9 52 chr1 15844171 15844286 -181351146 - B3A SINE B2 -88 110 1 5 705 615 198 9 0 chr1 15845255 15845371 -181350061 + B1_Mus1 SINE Alu 22 138 -10 5 705 310 224 145 0 chr1 15845384 15845460 -181349972 + B1_Mur2 SINE Alu 46 132 -17 5 705 715 251 134 0 chr1 15846033 15846220 -181349212 - B3 SINE B2 -2 214 3 5 705 1734 209 74 11 chr1 15846242 15846620 -181348812 + MTD LTR MaLR 3 404 -15 5 705 785 158 238 6 chr1 15846682 15846854 -181348578 - B3 SINE B2 -4 212 1 5 705 444 255 0 0 chr1 15847790 15847888 -181347544 - B3A SINE B2 -100 98 1 5 705 468 290 20 20 chr1 15847916 15848064 -181347368 + B1F SINE Alu 1 148 -1 5 705 502 243 113 32 chr1 15848061 15848115 -181347317 + MER58B DNA MER1_type 92 148 -193 5 705 2137 109 19 12 chr1 15848115 15848440 -181346992 - ORR1A2 LTR MaLR 0 327 1 5 705 502 243 113 32 chr1 15848440 15848606 -181346826 + MER58B DNA MER1_type 149 330 -11 5 705 351 268 113 0 chr1 15849262 15849359 -181346073 - PB1D7 SINE Alu -8 112 5 5 705 275 204 147 69 chr1 15849404 15849520 -181345912 - ID_B1 SINE B4 -10 214 90 5 705 360 219 24 0 chr1 15849780 15849862 -181345570 + B1_Mur2 SINE Alu 60 143 -6 5 705 682 160 30 0 chr1 15850089 15850220 -181345212 + B1_Mus2 SINE Alu 1 135 -12 5 705 626 25 0 12 chr1 15850229 15850310 -181345122 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 5 705 231 274 20 31 chr1 15850820 15850918 -181344514 + GA-rich Low_complexity Low_complexity 2 98 0 5 705 264 342 13 0 chr1 15851415 15851491 -181343941 - ID4_ SINE ID -2 81 5 5 705 1281 277 98 16 chr1 15851572 15852023 -181343409 + RCHARR1 DNA MER1_type 11 498 -476 5 705 2999 133 0 0 chr1 15852023 15852453 -181342979 + Lx LINE L1 375 804 -5853 5 705 2911 12 0 0 chr1 15852453 15852775 -181342657 + RLTRETN_Mm LTR ERVK 1 322 0 5 705 41887 28 2 6 chr1 15852775 15857636 -181337796 + MMETn-int LTR ERVK 1 4844 0 5 705 2891 16 0 0 chr1 15857636 15857958 -181337474 + RLTRETN_Mm LTR ERVK 1 322 0 5 88 22016 129 33 74 chr1 15857959 15859994 -181335438 + Lx LINE L1 800 2870 -3016 5 706 983 54 0 8 chr1 15859994 15860125 -181335307 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 5 706 22016 149 38 73 chr1 15860125 15864211 -181331221 + Lx LINE L1 2871 6653 -1 5 706 2191 204 10 10 chr1 15864211 15864705 -181330727 + RCHARR1 DNA MER1_type 481 974 0 5 706 606 256 173 35 chr1 15864739 15864970 -181330462 + B4A SINE B4 8 270 -22 5 706 486 88 0 0 chr1 15864978 15865046 -181330386 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 706 183 42 0 0 chr1 15865370 15865394 -181330038 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 706 723 229 0 0 chr1 15865411 15865586 -181329846 + CT-rich Low_complexity Low_complexity 4 178 0 5 706 317 214 86 0 chr1 15866067 15866137 -181329295 + ID SINE ID 1 76 -148 5 706 339 177 10 40 chr1 15866166 15866209 -181329223 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 5 706 3599 15 2 0 chr1 15866209 15866604 -181328828 + MTA_Mm LTR MaLR 1 396 0 6 706 339 177 10 40 chr1 15866604 15866660 -181328772 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 6 706 303 71 0 0 chr1 15866666 15866708 -181328724 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 706 256 279 0 0 chr1 15866708 15866769 -181328663 + ID_B1 SINE B4 109 169 -55 5 706 232 257 0 13 chr1 15866845 15866920 -181328512 - PB1D10 SINE Alu -1 116 43 6 706 377 322 98 56 chr1 15867930 15868216 -181327216 + MLT1D LTR MaLR 23 320 -185 6 706 440 289 96 0 chr1 15868287 15868422 -181327010 + MLT1D LTR MaLR 326 473 -32 6 706 498 307 40 88 chr1 15868453 15868782 -181326650 - MLT1-int LTR MaLR -726 645 333 6 706 371 245 207 7 chr1 15868794 15868934 -181326498 + MLT1D LTR MaLR 329 496 -9 6 706 526 220 46 30 chr1 15869015 15869146 -181326286 + ID_B1 SINE B4 92 224 0 6 706 432 0 0 0 chr1 15869343 15869391 -181326041 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 706 679 314 35 9 chr1 15869614 15869842 -181325590 + 7SK RNA RNA 1 234 -97 6 706 438 326 27 33 chr1 15870205 15870389 -181325043 - MER5A DNA MER1_type -6 183 1 6 706 839 269 59 73 chr1 15871312 15871601 -181323831 + B4 SINE B4 2 286 -6 6 706 228 237 89 81 chr1 15871664 15871788 -181323644 + LTR55 LTR ERV 146 270 -278 6 706 220 0 0 79 chr1 15871942 15871980 -181323452 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 6 706 216 67 0 0 chr1 15872476 15872506 -181322926 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 706 180 77 0 0 chr1 15874197 15874223 -181321209 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 706 469 264 170 34 chr1 15874298 15874533 -181320899 - L1MA5 LINE L1 -48 6252 5986 6 706 287 288 8 41 chr1 15874680 15874803 -181320629 + L1_Mur3 LINE L1 4747 4865 -1015 6 706 696 303 93 9 chr1 15875062 15875412 -181320020 + L1_Rod LINE L1 4858 5304 -842 6 706 3360 120 33 0 chr1 15875449 15875932 -181319500 + RLTR19 LTR ERVK 1 499 0 6 706 888 238 102 35 chr1 15876066 15876380 -181319052 + L1M2 LINE L1 5293 5627 -670 6 706 503 248 20 93 chr1 15876478 15876629 -181318803 - B1_Mur4 SINE Alu 0 150 11 6 706 462 294 228 31 chr1 15877105 15877528 -181317904 - L1M4 LINE L1 -796 5350 4845 6 706 301 321 19 0 chr1 15877530 15877636 -181317796 + PB1D10 SINE Alu 1 108 -9 6 706 271 187 0 0 chr1 15878829 15878893 -181316539 - B1_Mur4 SINE Alu -7 143 50 6 706 299 275 14 0 chr1 15879315 15879384 -181316048 - ID4 SINE ID -5 78 9 6 706 489 212 10 0 chr1 15880338 15880437 -181314995 + PB1D9 SINE Alu 1 100 -20 6 706 234 136 0 0 chr1 15880441 15880485 -181314947 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 706 606 39 0 0 chr1 15880529 15880606 -181314826 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 706 428 340 62 24 chr1 15880754 15880962 -181314470 + MER44B DNA MER2_type 8 223 -327 6 706 552 229 14 48 chr1 15883554 15883701 -181311731 - B1_Mur1 SINE Alu -7 142 1 6 706 392 284 78 49 chr1 15884625 15884829 -181310603 + B3 SINE B2 2 211 -5 6 706 229 313 48 0 chr1 15886081 15886164 -181309268 + (CATG)n Simple_repeat Simple_repeat 2 88 0 6 706 264 100 0 0 chr1 15886554 15886594 -181308838 + (CTTG)n Simple_repeat Simple_repeat 4 43 0 6 706 339 271 131 0 chr1 15886600 15886722 -181308710 - B1F SINE Alu -9 140 3 6 706 386 301 22 66 chr1 15886909 15887112 -181308320 - L1_Rod LINE L1 -779 5068 4870 6 706 2926 87 17 2 chr1 15887112 15887528 -181307904 + BGLII_Mus LTR ERVK 1 422 0 6 706 386 301 22 66 chr1 15887528 15887552 -181307880 - L1_Rod LINE L1 -978 4869 4851 6 706 287 270 79 0 chr1 15887561 15887650 -181307782 - U6 snRNA snRNA -10 97 2 6 706 410 288 24 53 chr1 15887751 15887920 -181307512 - RSINE1 SINE B4 0 165 2 6 706 942 310 14 14 chr1 15888522 15888797 -181306635 + B4A SINE B4 14 288 -4 6 706 235 217 99 28 chr1 15889393 15889464 -181305968 - MLT1A1 LTR MaLR -39 369 294 6 706 585 235 23 0 chr1 15890698 15890830 -181304602 + B1_Mur1 SINE Alu 1 135 -14 6 706 297 0 0 0 chr1 15890830 15890863 -181304569 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 6 706 685 191 188 73 chr1 15890863 15891055 -181304377 + B3 SINE B2 1 214 -2 6 706 1178 41 0 14 chr1 15891578 15891725 -181303707 + B1_Mm SINE Alu 2 146 -1 6 706 465 110 0 0 chr1 15891788 15891861 -181303571 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 706 383 350 104 32 chr1 15891886 15892137 -181303295 - B4 SINE B4 -21 271 3 6 706 481 312 151 43 chr1 15892845 15893261 -181302171 - MLT1C LTR MaLR -4 463 3 6 706 35 0 0 0 chr1 15893462 15893497 -181301935 + AT_rich Low_complexity Low_complexity 1 35 0 6 706 516 255 9 18 chr1 15893544 15893656 -181301776 - RSINE1 SINE B4 -32 133 23 6 706 1076 158 50 31 chr1 15894271 15894493 -181300939 - MTD LTR MaLR 0 419 194 6 706 262 171 0 157 chr1 15894511 15894594 -181300838 - RLTR17 LTR ERVK 0 692 623 6 706 1239 144 28 5 chr1 15894637 15894854 -181300578 - RLTR31A_Mm LTR ERVK -223 361 140 6 706 346 191 0 0 chr1 15894868 15894931 -181300501 - MTD LTR MaLR -258 163 101 6 706 615 177 15 23 chr1 15894965 15895098 -181300334 - MTD LTR MaLR -289 132 1 6 706 603 308 22 11 chr1 15895755 15895939 -181299493 - B3 SINE B2 -30 186 1 6 706 243 227 0 0 chr1 15896832 15896898 -181298534 + CT-rich Low_complexity Low_complexity 2 67 0 6 706 981 124 0 0 chr1 15897785 15898063 -181297369 + (CA)n Simple_repeat Simple_repeat 1 278 0 6 706 350 337 78 6 chr1 15898255 15898422 -181297010 + ID_B1 SINE B4 12 190 -34 6 706 255 170 0 0 chr1 15898424 15898471 -181296961 + GA-rich Low_complexity Low_complexity 2 48 0 6 706 231 204 41 0 chr1 15898486 15898535 -181296897 + GA-rich Low_complexity Low_complexity 3 53 0 6 706 22 56 0 0 chr1 15898541 15898577 -181296855 + AT_rich Low_complexity Low_complexity 1 36 0 6 706 420 71 0 0 chr1 15898663 15898719 -181296713 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 706 398 289 157 19 chr1 15899846 15900164 -181295268 + Charlie2b DNA MER1_type 2177 2538 -244 6 706 1362 148 0 18 chr1 15900795 15901022 -181294410 + URR1B DNA MER1_type 3 225 0 6 706 694 285 131 38 chr1 15901768 15902165 -181293267 + RCHARR1 DNA MER1_type 48 481 -493 6 706 2903 226 104 43 chr1 15902191 15902911 -181292521 + Lx6 LINE L1 6489 7252 -208 6 706 34 24 0 0 chr1 15902919 15902960 -181292472 + AT_rich Low_complexity Low_complexity 1 41 0 6 706 3362 43 5 0 chr1 15903874 15904268 -181291164 - MTA_Mm LTR MaLR 0 396 1 6 706 640 296 24 121 chr1 15905153 15905300 -181290132 - L1MB5 LINE L1 -64 6110 5994 6 706 1329 107 116 4 chr1 15905300 15905525 -181289907 - L1_Mus3 LINE L1 -6 6632 6383 6 706 640 296 24 121 chr1 15905525 15905750 -181289682 - L1MB5 LINE L1 -181 5993 5774 6 706 650 264 57 5 chr1 15905794 15906003 -181289429 - L1MB5 LINE L1 -658 5522 5303 6 706 633 160 7 94 chr1 15906086 15906224 -181289208 + B1_Mur3 SINE Alu 24 149 0 6 706 238 132 38 0 chr1 15906244 15906297 -181289135 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 706 438 287 48 27 chr1 15906663 15906810 -181288622 - ID_B1 SINE B4 -63 161 12 6 706 895 152 21 0 chr1 15906862 15907007 -181288425 - B1_Mus1 SINE Alu 0 148 1 6 706 659 83 38 16 chr1 15907263 15907454 -181287978 - ORR1B1 LTR MaLR -25 304 3 6 706 361 168 28 42 chr1 15907721 15907792 -181287640 + RSINE1 SINE B4 10 78 -214 6 706 369 73 18 0 chr1 15907905 15907960 -181287472 + RLTR1B LTR ERV1 355 410 -102 6 706 1028 122 6 0 chr1 15907967 15908131 -181287301 + RLTR1B LTR ERV1 348 512 0 6 706 508 34 0 0 chr1 15908131 15908190 -181287242 + RLTR1B-int LTR ERV1 1 59 -3240 6 706 2379 87 14 19 chr1 15908182 15908545 -181286887 + RLTR1B-int LTR ERV1 844 1204 -2095 6 706 8131 54 5 10 chr1 15908552 15909551 -181285881 + RLTR1B-int LTR ERV1 1139 2109 -1190 6 706 5269 36 54 2 chr1 15909548 15910180 -181285252 + RLTR1B-int LTR ERV1 2635 3299 0 6 706 2785 58 29 25 chr1 15910180 15910588 -181284844 + RLTR1B LTR ERV1 1 410 -102 6 706 351 191 0 116 chr1 15910595 15910690 -181284742 + RLTR1B LTR ERV1 348 431 -81 6 706 304 21 0 59 chr1 15910690 15910741 -181284691 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 706 286 273 23 0 chr1 15910966 15911054 -181284378 + CT-rich Low_complexity Low_complexity 1 90 0 6 706 387 0 0 0 chr1 15911056 15911099 -181284333 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 706 5570 37 0 3 chr1 15912374 15913030 -181282402 - L1Md_F2 LINE L1 -3 6579 5926 6 706 1542 53 16 0 chr1 15913475 15913665 -181281767 - B2_Mm2 SINE B2 0 195 3 6 706 856 190 196 0 chr1 15913780 15913959 -181281473 + B3 SINE B2 2 215 -1 6 706 703 281 7 0 chr1 15914130 15914283 -181281149 + B3A SINE B2 1 154 -44 6 706 717 12 0 0 chr1 15914289 15914371 -181281061 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 706 701 308 14 49 chr1 15915346 15915633 -181279799 - B4 SINE B4 -14 278 2 6 706 234 195 0 0 chr1 15916773 15916814 -181278618 - Charlie24 DNA MER1_type -16 2434 2394 6 706 528 16 0 0 chr1 15916840 15916901 -181278531 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 706 218 214 0 0 chr1 15916990 15917032 -181278400 + B4 SINE B4 79 120 -172 6 706 234 151 56 19 chr1 15917151 15917205 -181278227 + PB1D10 SINE Alu 40 95 -22 6 706 338 250 11 0 chr1 15917158 15917246 -181278186 + ID_B1 SINE B4 130 218 -6 6 706 348 88 0 0 chr1 15917371 15917428 -181278004 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 706 355 290 11 0 chr1 15917460 15917553 -181277879 - PB1D10 SINE Alu -12 105 12 6 706 294 344 11 0 chr1 15917470 15917563 -181277869 - ID_B1 SINE B4 -48 176 83 6 706 195 318 24 0 chr1 15917720 15917805 -181277627 + L2 LINE L2 1661 1747 -1672 6 706 338 64 0 0 chr1 15917914 15917961 -181277471 - ORR1B1 LTR MaLR -8 386 340 6 706 39832 34 1 0 chr1 15918214 15923623 -181271809 - L1Md_T LINE L1 0 6582 1170 6 706 5755 157 24 30 chr1 15923629 15924766 -181270666 - L1Md_T LINE L1 -5411 1205 99 6 706 1769 173 70 0 chr1 15924766 15925096 -181270336 - ORR1B1 LTR MaLR -41 353 1 6 706 1074 171 108 83 chr1 15925164 15925257 -181270175 - RMER10B LTR ERVL -65 333 238 6 706 633 27 0 0 chr1 15925257 15925332 -181270100 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 6 706 1074 171 108 83 chr1 15925332 15925563 -181269869 - RMER10B LTR ERVL -161 237 1 6 706 513 0 0 0 chr1 15926179 15926236 -181269196 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 706 257 320 0 10 chr1 15926248 15926346 -181269086 + CT-rich Low_complexity Low_complexity 1 97 0 7 706 184 327 18 0 chr1 15926463 15926518 -181268914 + MIR SINE MIR 31 86 -122 7 706 201 355 28 9 chr1 15927175 15927283 -181268149 + MER5A DNA MER1_type 11 120 -69 7 706 225 306 0 0 chr1 15927336 15927385 -181268047 - ID SINE ID -153 71 23 7 706 2221 148 39 3 chr1 15927427 15927814 -181267618 - MTC LTR MaLR -20 401 1 7 706 5601 154 137 36 chr1 15927814 15928705 -181266727 - MTC-int LTR MaLR 0 1258 217 7 706 492 18 0 0 chr1 15928705 15928762 -181266670 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 706 5601 154 137 36 chr1 15928762 15929013 -181266419 - MTC-int LTR MaLR -1042 216 1 7 706 2380 170 22 0 chr1 15929013 15929425 -181266007 - MTC LTR MaLR 0 421 1 7 706 367 333 20 20 chr1 15929467 15929614 -181265818 - MLT1D LTR MaLR -3 502 356 7 706 390 307 39 81 chr1 15929752 15929986 -181265446 - MLT1D-int LTR MaLR -7 1482 1259 7 706 394 185 0 24 chr1 15930082 15930165 -181265267 + B4A SINE B4 5 85 -207 7 706 2584 195 63 8 chr1 15930519 15931109 -181264323 - ORR1C2-int LTR MaLR -887 622 1 7 706 876 192 64 0 chr1 15931109 15931281 -181264151 - ORR1C2 LTR MaLR 0 384 202 7 706 318 80 0 0 chr1 15931281 15931331 -181264101 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 7 706 243 211 0 0 chr1 15931337 15931395 -181264037 - ORR1C2 LTR MaLR -336 58 1 7 706 451 312 83 0 chr1 15931587 15931653 -181263779 + B4A SINE B4 137 205 -87 7 706 534 31 0 0 chr1 15931653 15931717 -181263715 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 706 451 312 83 0 chr1 15931717 15931794 -181263638 + B4A SINE B4 206 290 -2 7 706 375 387 105 21 chr1 15931825 15932197 -181263235 - MLT1D-int LTR MaLR -296 1075 673 7 706 1141 275 121 22 chr1 15932226 15932639 -181262793 - Lx8 LINE L1 -17 7456 7003 7 706 229 274 0 0 chr1 15934236 15934287 -181261145 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 706 365 293 40 8 chr1 15934357 15934481 -181260951 - B1F SINE Alu 0 149 22 7 706 856 142 43 0 chr1 15935180 15935321 -181260111 - B1_Mus1 SINE Alu -1 147 1 7 706 25560 106 19 6 chr1 15935552 15940121 -181255311 - L1_Mus3 LINE L1 -5 6633 2001 7 706 34017 13 0 6 chr1 15940139 15946319 -181249113 - L1Md_A LINE L1 -1 6581 445 7 706 7051 100 29 1 chr1 15946320 15948036 -181247396 - L1VL1 LINE L1 -1897 1801 30 7 706 212 306 153 18 chr1 15948368 15948487 -181246945 + MIR SINE MIR 25 164 -104 7 706 3072 152 46 26 chr1 15948635 15949244 -181246188 - RMER20B LTR ERVK -2 625 5 7 706 648 148 39 0 chr1 15949264 15949419 -181246013 + (TA)n Simple_repeat Simple_repeat 1 161 0 7 706 21 0 0 0 chr1 15949420 15949441 -181245991 + AT_rich Low_complexity Low_complexity 1 21 0 7 706 833 225 72 43 chr1 15949582 15949791 -181245641 - B3 SINE B2 -1 215 1 7 706 288 311 37 19 chr1 15949813 15949921 -181245511 - Lx8 LINE L1 -330 7143 7034 7 706 297 131 0 0 chr1 15950047 15950108 -181245324 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 7 706 1243 47 0 0 chr1 15950108 15950256 -181245176 - B1_Mus1 SINE Alu 0 148 1 7 706 708 244 174 0 chr1 15950742 15951057 -181244375 + MTEb LTR MaLR 1 370 -9 7 706 399 281 0 0 chr1 15952070 15952241 -181243191 + GA-rich Low_complexity Low_complexity 3 173 0 7 706 386 188 14 0 chr1 15952445 15952514 -181242918 - B1_Mur4 SINE Alu -80 70 1 7 706 234 0 0 0 chr1 15952608 15952634 -181242798 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 706 227 157 22 22 chr1 15953713 15953804 -181241628 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 706 2466 106 22 24 chr1 15953804 15954173 -181241259 - RLTR9A LTR ERVK 0 368 1 7 706 360 0 0 0 chr1 15954186 15954226 -181241206 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 706 651 112 0 0 chr1 15954537 15954635 -181240797 + (TTC)n Simple_repeat Simple_repeat 1 98 0 7 706 1238 89 11 0 chr1 15954636 15954816 -181240616 - MT2C_Mm LTR ERVL 0 475 294 7 706 591 53 0 0 chr1 15954816 15954891 -181240541 + (ATG)n Simple_repeat Simple_repeat 2 76 0 7 706 633 27 0 0 chr1 15955043 15955118 -181240314 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 706 297 50 0 0 chr1 15955128 15955168 -181240264 + MuRRS4-int LTR ERV1 5024 5063 0 7 706 1683 144 12 30 chr1 15955176 15955563 -181239869 + LTRIS3 LTR ERV1 122 512 0 7 706 274 165 63 142 chr1 15955563 15955690 -181239742 + MuRRS4-int LTR ERV1 1 117 -3581 7 706 1800 198 88 71 chr1 15955948 15956496 -181238936 + MuRRS4-int LTR ERV1 180 736 -4327 7 706 5189 108 14 30 chr1 15956493 15957185 -181238247 + RMER16-int LTR ERVK 664 1361 -4045 7 706 414 0 0 0 chr1 15957185 15957231 -181238201 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 7 706 1098 97 0 0 chr1 15957231 15957376 -181238056 - B1_Mm SINE Alu -2 145 1 7 706 5189 108 14 30 chr1 15957376 15957471 -181237961 + RMER16-int LTR ERVK 1362 1438 -3968 7 706 302 163 0 0 chr1 15957463 15957512 -181237920 + MuRRS4-int LTR ERV1 750 798 -4265 7 706 8808 149 30 8 chr1 15957509 15960443 -181234989 + MuRRS4-int LTR ERV1 1178 4271 -792 7 706 2026 51 19 15 chr1 15960447 15960708 -181234724 + MuRRS4-int LTR ERV1 4802 5063 0 7 706 1765 136 17 17 chr1 15960716 15961088 -181234344 + LTRIS3 LTR ERV1 122 512 0 7 706 691 315 80 44 chr1 15961584 15961949 -181233483 - MTEa LTR MaLR 0 379 2 7 706 239 254 190 0 chr1 15962278 15962397 -181233035 + MIR SINE MIR 97 229 -33 7 706 379 250 0 48 chr1 15963446 15963551 -181231881 + PB1D10 SINE Alu 9 108 -9 7 706 763 157 49 21 chr1 15963889 15964032 -181231400 - B1_Mus2 SINE Alu 0 147 1 7 706 1002 56 0 27 chr1 15964217 15964363 -181231069 + B2_Mm2 SINE B2 3 144 -51 7 706 414 39 0 0 chr1 15964363 15964415 -181231017 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 706 1008 83 45 0 chr1 15965748 15965880 -181229552 + B1_Mus1 SINE Alu 1 138 -10 7 706 243 0 0 0 chr1 15965880 15965907 -181229525 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 706 553 239 0 0 chr1 15967457 15967587 -181227845 + L1M5 LINE L1 5629 5758 -366 7 706 23 33 0 0 chr1 15967708 15967738 -181227694 + AT_rich Low_complexity Low_complexity 1 30 0 7 706 1050 8 0 0 chr1 15967813 15967932 -181227500 + (GGGAA)n Simple_repeat Simple_repeat 5 123 0 7 706 446 49 0 16 chr1 15967932 15967994 -181227438 + (GGA)n Simple_repeat Simple_repeat 1 61 0 7 706 461 264 0 43 chr1 15968340 15968455 -181226977 + PB1D10 SINE Alu 1 110 -7 7 706 250 231 0 0 chr1 15968522 15968574 -181226858 - MLT2C2 LTR ERVL 0 559 508 7 706 293 171 355 0 chr1 15968594 15968704 -181226728 - B2_Mm2 SINE B2 0 195 47 7 706 767 126 0 0 chr1 15968725 15968844 -181226588 - B2_Mm2 SINE B2 -66 129 11 7 706 433 345 0 25 chr1 15968976 15969178 -181226254 - Tigger5 DNA MER2_type 0 2406 2210 7 706 1156 243 110 75 chr1 15970317 15970396 -181225036 - Lx8 LINE L1 -325 7148 7075 7 706 802 199 7 0 chr1 15970396 15970532 -181224900 + B1_Mur1 SINE Alu 5 141 -8 7 706 1156 243 110 75 chr1 15970532 15970879 -181224553 - Lx8 LINE L1 -399 7074 6707 7 706 708 211 0 0 chr1 15970929 15971052 -181224380 - B3 SINE B2 -90 126 4 7 706 493 309 80 17 chr1 15971056 15971293 -181224139 - RMER15-int LTR ERVL -345 4654 4403 7 706 834 246 107 20 chr1 15971452 15971751 -181223681 - RMER5 LTR ERV1 -161 373 49 7 706 347 255 71 0 chr1 15971935 15972033 -181223399 - MER45R DNA Tip100 -1382 199 95 7 706 720 222 36 98 chr1 15972045 15972270 -181223162 + B3 SINE B2 1 211 -5 7 706 235 309 50 20 chr1 15973184 15973283 -181222149 + MLT1K LTR MaLR 466 567 -28 7 706 425 282 68 36 chr1 15973822 15974043 -181221389 + L1MC4 LINE L1 7482 7709 -333 7 706 627 319 54 7 chr1 15974284 15974562 -181220870 + L1MA6 LINE L1 5535 5825 -475 7 706 557 209 47 35 chr1 15974643 15974812 -181220620 + L1MA6 LINE L1 5814 5984 -316 7 706 523 184 27 18 chr1 15975027 15975138 -181220294 - B4 SINE B4 -65 227 116 7 706 333 0 0 0 chr1 15975195 15975232 -181220200 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 706 180 0 0 0 chr1 15975554 15975574 -181219858 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 7 706 232 309 0 0 chr1 15975672 15975756 -181219676 + A-rich Low_complexity Low_complexity 1 84 0 7 706 763 238 150 0 chr1 15975760 15976033 -181219399 + MER113 DNA MER1_type 125 438 -83 7 706 658 307 75 38 chr1 15976169 15976230 -181219202 + MER2 DNA MER2_type 2 64 -281 7 706 1479 43 38 0 chr1 15976230 15976414 -181219018 + B2_Mm2 SINE B2 1 191 -4 7 706 658 307 75 38 chr1 15976414 15976670 -181218762 + MER2 DNA MER2_type 65 330 -15 7 706 943 261 49 78 chr1 15977846 15978216 -181217216 + ORR1E LTR MaLR 1 359 0 7 706 25 0 0 0 chr1 15979650 15979675 -181215757 + AT_rich Low_complexity Low_complexity 1 25 0 7 706 2201 35 0 4 chr1 15979675 15979936 -181215496 + L1Md_T LINE L1 6322 6581 -1 7 706 431 280 0 20 chr1 15981731 15981833 -181213599 + PB1D10 SINE Alu 10 109 -8 7 706 235 203 0 59 chr1 15981927 15981995 -181213437 - Lx8 LINE L1 -262 7211 7148 7 706 336 277 33 67 chr1 15982170 15982290 -181213142 + ORR1E LTR MaLR 71 186 -173 7 706 845 254 82 5 chr1 15982561 15982767 -181212665 - ID_B1 SINE B4 0 224 3 7 706 408 20 0 0 chr1 15983009 15983058 -181212374 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 706 329 195 52 0 chr1 15983254 15983331 -181212101 + MER2 DNA MER2_type 116 196 -149 7 706 333 296 51 0 chr1 15983344 15983442 -181211990 + MER2 DNA MER2_type 241 343 -2 7 706 627 146 219 0 chr1 15984877 15985000 -181210432 + B1_Mur4 SINE Alu 1 150 0 7 706 363 227 270 19 chr1 15985315 15985484 -181209948 + ID_B1 SINE B4 13 223 -1 7 706 342 98 0 0 chr1 15985484 15985535 -181209897 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 7 706 246 62 0 0 chr1 15985597 15985629 -181209803 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 7 706 24 0 0 0 chr1 15986886 15986910 -181208522 + AT_rich Low_complexity Low_complexity 1 24 0 7 706 348 252 25 34 chr1 15987669 15987682 -181207750 - B4A SINE B4 -19 273 262 7 706 342 0 0 0 chr1 15987682 15987720 -181207712 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 706 348 270 222 18 chr1 15987720 15987915 -181207517 - B4A SINE B4 -31 261 25 7 706 826 267 136 42 chr1 15987921 15988187 -181207245 - MER34A1 LTR ERV1 -187 400 107 7 706 1931 173 55 6 chr1 15988187 15988553 -181206879 - ORR1C2 LTR MaLR 0 384 1 7 706 826 267 136 42 chr1 15988553 15988646 -181206786 - MER34A1 LTR ERV1 -481 106 7 7 706 294 294 21 13 chr1 15988830 15988942 -181206490 - Kanga1b DNA Tc2 -16 763 653 7 706 305 285 45 23 chr1 15988988 15989121 -181206311 - Kanga1b DNA Tc2 -260 519 384 7 706 1344 162 14 0 chr1 15989296 15989518 -181205914 + URR1B DNA MER1_type 1 225 0 7 706 348 287 125 107 chr1 15989526 15989807 -181205625 + RMER15 LTR ERVL 22 307 -268 7 706 251 274 70 23 chr1 15989823 15989909 -181205523 + RMER15 LTR ERVL 233 322 -253 7 706 412 277 40 7 chr1 15990120 15990269 -181205163 - LTR53 LTR ERVL -1 518 365 7 706 278 260 151 19 chr1 15990452 15990558 -181204874 + PB1D7 SINE Alu 1 120 0 8 88 1168 68 0 13 chr1 15990711 15990861 -181204571 + B1_Mus1 SINE Alu 1 148 0 8 707 554 247 158 0 chr1 15990910 15991068 -181204364 + B3A SINE B2 1 183 -15 8 707 28 29 0 0 chr1 15991108 15991143 -181204289 + AT_rich Low_complexity Low_complexity 1 35 0 8 707 496 312 90 11 chr1 15991210 15991476 -181203956 - B4A SINE B4 -4 288 2 8 707 386 181 0 0 chr1 15991691 15991763 -181203669 - ORR1A3 LTR MaLR 0 329 258 8 707 12729 84 3 2 chr1 15991772 15994216 -181201216 - L1_Mus1 LINE L1 0 6567 4120 8 707 807 174 19 0 chr1 15994218 15994373 -181201059 - ORR1A3 LTR MaLR -57 269 112 8 707 1118 121 79 0 chr1 15994361 15994551 -181200881 - MT2B LTR ERVL -396 205 1 8 707 239 182 239 0 chr1 15994620 15994708 -181200724 + MLT2C1 LTR ERVL 20 128 -286 8 707 2418 144 50 30 chr1 15994724 15995224 -181200208 - RLTR28 LTR ERVL -14 510 1 8 707 263 373 70 11 chr1 15995224 15995410 -181200022 + MLT2C1 LTR ERVL 139 335 -62 8 707 429 188 0 0 chr1 15995434 15995519 -181199913 + CT-rich Low_complexity Low_complexity 2 86 0 8 707 210 37 0 0 chr1 15995519 15995546 -181199886 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 707 602 236 0 75 chr1 15995788 15995948 -181199484 + B1_Mur3 SINE Alu 1 148 -1 8 707 1175 75 0 0 chr1 15996178 15996324 -181199108 + B1_Mus2 SINE Alu 2 147 0 8 707 510 218 0 0 chr1 15996969 15997070 -181198362 - PB1D10 SINE Alu -7 110 10 8 707 552 68 0 0 chr1 15998234 15998307 -181197125 + (TCTCCC)n Simple_repeat Simple_repeat 1 73 0 8 707 944 253 107 24 chr1 15998609 15998937 -181196495 + MTE2b LTR MaLR 3 357 -22 8 707 186 184 104 13 chr1 15999741 15999818 -181195614 + L2 LINE L2 2233 2316 -1103 8 707 229 233 0 16 chr1 15999933 15999994 -181195438 - MTC LTR MaLR -14 407 348 8 707 481 329 115 10 chr1 16000001 16000210 -181195222 - MTE2a LTR MaLR -87 292 62 1 707 315 136 44 29 chr1 16000211 16000279 -181195153 - ORR1D1 LTR MaLR 0 419 351 2 707 353 191 0 14 chr1 16000282 16000351 -181195081 - ORR1D1 LTR MaLR -141 233 166 2 707 683 191 0 7 chr1 16000351 16000499 -181194933 + GA-rich Low_complexity Low_complexity 2 148 0 3 707 738 85 55 0 chr1 16000514 16000678 -181194754 + (GGA)n Simple_repeat Simple_repeat 2 174 0 4 707 949 195 5 16 chr1 16000680 16000868 -181194564 - ORR1D1 LTR MaLR -188 186 1 2 707 4941 209 71 40 chr1 16000871 16002120 -181193312 - Lx9 LINE L1 -344 7300 5909 5 707 523 219 24 16 chr1 16002152 16002277 -181193155 + B1_Mur4 SINE Alu 4 129 -21 6 707 284 70 23 0 chr1 16002277 16002320 -181193112 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 707 1874 193 110 16 chr1 16002323 16002760 -181192672 - Lx9 LINE L1 -7 5840 5363 5 707 666 237 105 5 chr1 16002760 16002951 -181192481 - MTD LTR MaLR -209 210 1 8 707 269 272 111 0 chr1 16002952 16003033 -181192399 - MTE2a LTR MaLR -286 93 4 1 707 2919 100 8 79 chr1 16003114 16003499 -181191933 + MERVL_2A-int LTR ERVL 575 933 -4552 9 707 1121 135 67 0 chr1 16003499 16003677 -181191755 + B2_Mm1t SINE B2 2 191 -2 1 707 2919 100 8 79 chr1 16003677 16003760 -181191672 + MERVL_2A-int LTR ERVL 934 1010 -4475 9 707 7846 72 28 11 chr1 16003762 16005005 -181190427 - L1_Mus3 LINE L1 -6 6632 5378 1 707 1974 124 0 36 chr1 16005005 16005314 -181190118 + MERVL_2A-int LTR ERVL 1143 1440 -4321 9 707 349 51 49 37 chr1 16005324 16005406 -181190026 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 1 707 443 48 0 0 chr1 16005406 16005474 -181189958 - B1_Mur4 SINE Alu 0 150 50 1 707 1079 139 12 0 chr1 16005474 16005639 -181189793 + MERVL_2A-int LTR ERVL 1449 1615 -4146 9 707 425 76 10 0 chr1 16005682 16005748 -181189684 - B2_Mm2 SINE B2 -100 116 47 1 707 966 164 6 0 chr1 16005780 16005939 -181189493 - B2_Mm2 SINE B2 -34 161 2 1 707 10170 108 36 10 chr1 16005939 16007022 -181188410 + MERVL_2A-int LTR ERVL 1609 2717 -3044 9 707 2948 73 26 8 chr1 16007022 16007411 -181188021 + MTA_Mm LTR MaLR 1 396 0 1 707 8314 63 27 3 chr1 16007411 16008483 -181186949 + MTA_Mm-int LTR MaLR 1 1098 0 1 707 3267 36 31 0 chr1 16008483 16008867 -181186565 + MTA_Mm LTR MaLR 1 396 0 1 707 10170 108 36 10 chr1 16008867 16009218 -181186214 + MERVL_2A-int LTR ERVL 2718 3081 -2680 9 707 4441 93 42 7 chr1 16009200 16009814 -181185618 + MERVL_2A-int LTR ERVL 3016 3651 -1834 9 707 8379 105 23 25 chr1 16009816 16010714 -181184718 + MERVL_2A-int LTR ERVL 4145 5069 -416 9 707 1191 74 0 0 chr1 16010714 16010862 -181184570 + B1_Mus1 SINE Alu 1 148 0 1 707 8379 105 23 25 chr1 16010862 16011165 -181184267 + MERVL_2A-int LTR ERVL 5070 5344 -141 9 707 316 125 26 53 chr1 16011173 16011249 -181184183 + ORR1A3-int LTR MaLR 567 640 -1323 1 707 257 105 0 0 chr1 16011249 16011287 -181184145 + MERVL_2A-int LTR ERVL 5448 5485 0 9 707 3133 111 12 52 chr1 16011287 16011782 -181183650 + MT2C_Mm LTR ERVL 1 475 0 9 707 10741 136 72 24 chr1 16011782 16013655 -181181777 + ORR1A2-int LTR MaLR 1 1963 0 1 707 2409 83 9 0 chr1 16013655 16013979 -181181453 + ORR1A2 LTR MaLR 1 327 0 1 707 552 346 52 0 chr1 16014168 16014379 -181181053 + ID_B1 SINE B4 2 223 -1 2 707 289 327 51 57 chr1 16014427 16014602 -181180830 + L2 LINE L2 2699 2872 -547 2 707 247 275 38 29 chr1 16014610 16014715 -181180717 + L1MCc LINE L1 67 172 -6251 2 707 191 175 19 37 chr1 16014801 16014908 -181180524 + T-rich Low_complexity Low_complexity 2 106 0 2 707 562 187 101 101 chr1 16014908 16015057 -181180375 - B1F SINE Alu 0 149 1 2 707 596 238 0 0 chr1 16015138 16015260 -181180172 + B1_Mus2 SINE Alu 9 130 -17 2 707 252 0 0 0 chr1 16015304 16015332 -181180100 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 2 707 186 167 0 0 chr1 16015334 16015370 -181180062 + GA-rich Low_complexity Low_complexity 1 36 0 2 707 490 252 176 66 chr1 16015375 16015677 -181179755 + L1MA6 LINE L1 5572 5906 -394 2 707 344 233 119 70 chr1 16015688 16015831 -181179601 + RSINE1 SINE B4 3 152 -13 2 707 497 202 26 44 chr1 16015831 16015945 -181179487 + RMER20B LTR ERVK 12 123 -504 3 707 192 125 0 0 chr1 16016331 16016363 -181179069 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 707 2360 284 134 19 chr1 16016385 16017317 -181178115 - Lx8 LINE L1 -195 7278 6240 3 707 227 274 0 16 chr1 16017358 16017421 -181178011 - Lx5 LINE L1 -272 6778 6717 3 707 240 35 0 0 chr1 16017428 16017457 -181177975 + (TTC)n Simple_repeat Simple_repeat 2 30 0 3 707 1277 269 124 49 chr1 16017496 16018309 -181177123 - L1_Rod LINE L1 -583 5264 4391 3 707 1725 153 47 81 chr1 16018316 16018699 -181176733 - ORR1C1 LTR MaLR -8 370 1 3 707 282 233 103 37 chr1 16018783 16018890 -181176542 - B1_Mus2 SINE Alu 0 147 34 3 707 28 0 0 0 chr1 16018923 16018951 -181176481 + AT_rich Low_complexity Low_complexity 1 28 0 3 707 1310 211 84 12 chr1 16018988 16019306 -181176126 - RMER13A LTR ERVK -97 763 423 3 707 1061 61 0 20 chr1 16019306 16019456 -181175976 + B1_Mus1 SINE Alu 2 148 0 4 707 1899 163 168 5 chr1 16019461 16019831 -181175601 - RMER13A LTR ERVK -430 430 1 3 707 930 286 58 21 chr1 16019832 16020311 -181175121 - L1_Rod LINE L1 -3684 2163 1667 3 707 930 172 6 22 chr1 16020324 16020502 -181174930 + ORR1C2 LTR MaLR 2 176 -198 4 707 36991 62 2 14 chr1 16020509 16026648 -181168784 - L1Md_F2 LINE L1 -12 6570 505 4 707 432 136 0 0 chr1 16026658 16026746 -181168686 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 707 1018 186 0 45 chr1 16026746 16026966 -181168466 + ORR1C2 LTR MaLR 175 384 0 4 707 1180 75 0 0 chr1 16026999 16027145 -181168287 - B1_Mus2 SINE Alu 0 147 2 4 707 270 302 65 6 chr1 16027152 16027322 -181168110 - L1_Mur3 LINE L1 -4231 1649 1470 4 707 782 140 8 8 chr1 16027636 16027766 -181167666 - B1_Mur3 SINE Alu -1 148 19 4 707 400 283 6 76 chr1 16027641 16027775 -181167657 - ID_B1 SINE B4 -6 218 94 4 707 2050 127 21 21 chr1 16027775 16028104 -181167328 + ORR1A4 LTR MaLR 1 329 0 4 707 400 283 6 76 chr1 16028104 16028126 -181167306 - ID_B1 SINE B4 -131 93 73 4 707 402 21 0 0 chr1 16028229 16028276 -181167156 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 707 1694 26 0 0 chr1 16028337 16028528 -181166904 + B2_Mm1a SINE B2 2 192 -1 5 707 688 149 67 96 chr1 16028993 16029171 -181166261 + LTRIS3 LTR ERV1 339 511 -1 5 707 198 0 0 0 chr1 16029171 16029193 -181166239 + (CAA)n Simple_repeat Simple_repeat 3 24 0 5 707 1278 84 15 40 chr1 16029222 16029420 -181166012 + B2_Mm2 SINE B2 3 195 0 5 707 987 166 28 22 chr1 16029427 16029606 -181165826 - RMER1A Other Other -166 864 685 5 707 2382 184 63 59 chr1 16029771 16030344 -181165088 - RLTR18 LTR ERVK 0 616 42 5 707 241 245 0 0 chr1 16030349 16030398 -181165034 - L1M1 LINE L1 -817 5486 5438 5 707 292 81 0 0 chr1 16030370 16030407 -181165025 - L1_Rod LINE L1 -442 5405 5369 5 707 417 39 0 0 chr1 16030948 16030999 -181164433 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 707 488 297 36 0 chr1 16031012 16031150 -181164282 - RSINE1 SINE B4 -15 150 8 5 707 2645 122 48 24 chr1 16031246 16031716 -181163716 + LTRIS2 LTR ERV1 9 470 -94 6 707 207 0 0 0 chr1 16031847 16031870 -181163562 + (TAA)n Simple_repeat Simple_repeat 2 24 0 6 707 4839 106 19 29 chr1 16032145 16032901 -181162531 - RMER17A LTR ERVK 0 751 4 6 707 21 0 0 0 chr1 16033060 16033081 -181162351 + AT_rich Low_complexity Low_complexity 1 21 0 6 707 276 312 43 26 chr1 16033107 16033222 -181162210 + PB1D10 SINE Alu 1 117 0 6 707 542 114 0 11 chr1 16033222 16033311 -181162121 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 6 707 336 155 191 0 chr1 16034029 16034135 -181161297 - B2_Mm2 SINE B2 -1 194 46 6 707 1113 110 6 0 chr1 16034174 16034337 -181161095 - B2_Mm1t SINE B2 -28 165 2 6 707 548 91 11 0 chr1 16035003 16035091 -181160341 + (TG)n Simple_repeat Simple_repeat 1 89 0 6 707 814 265 42 35 chr1 16035218 16035507 -181159925 - B4A SINE B4 -1 291 1 6 707 1611 166 159 11 chr1 16035722 16036087 -181159345 - MTD LTR MaLR 0 419 1 7 707 1281 166 4 63 chr1 16036177 16036415 -181159017 - URR1B DNA MER1_type 0 225 2 7 707 613 231 0 0 chr1 16036653 16036770 -181158662 + RSINE1 SINE B4 3 119 -46 7 707 394 312 0 0 chr1 16036769 16036881 -181158551 - B4 SINE B4 -179 113 2 7 707 370 318 58 17 chr1 16037321 16037371 -181158061 + MuRRS4-int LTR ERV1 1197 1246 -6310 7 707 222 37 0 0 chr1 16037371 16037398 -181158034 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 707 562 309 91 75 chr1 16037398 16038550 -181156882 + MuRRS4-int LTR ERV1 1101 2562 -5216 7 707 527 323 42 122 chr1 16038580 16039081 -181156351 + MuRRS4-int LTR ERV1 3970 4430 -3171 7 707 338 297 28 19 chr1 16039423 16039569 -181155863 + MuRRS4-int LTR ERV1 4695 4924 -2682 7 707 1799 142 3 29 chr1 16039569 16039880 -181155552 + RLTR10E LTR ERVK 1 303 -8 7 707 1589 254 29 18 chr1 16039880 16040343 -181155089 + MuRRS4-int LTR ERV1 3659 4013 -1050 7 707 1165 294 25 14 chr1 16040794 16041237 -181154195 + RLTR6-int LTR ERV1 7088 7721 -57 7 707 2495 119 154 0 chr1 16041326 16041787 -181153645 + RLTR47_MM LTR ERV1 1 532 0 7 707 471 177 0 30 chr1 16041883 16041982 -181153450 + MLT1A1 LTR MaLR 312 407 -1 7 707 353 248 97 37 chr1 16042772 16042906 -181152526 + B4 SINE B4 151 292 0 8 707 336 330 17 0 chr1 16042938 16043056 -181152376 + PB1D7 SINE Alu 1 120 0 8 707 693 226 120 5 chr1 16043163 16043354 -181152078 + B3 SINE B2 2 214 -2 8 707 28 61 0 0 chr1 16043999 16044048 -181151384 + AT_rich Low_complexity Low_complexity 1 49 0 8 707 498 301 29 22 chr1 16044055 16044194 -181151238 + ID_B1 SINE B4 85 224 0 8 707 549 156 0 0 chr1 16044966 16045062 -181150370 + GA-rich Low_complexity Low_complexity 2 97 0 8 707 1083 27 0 39 chr1 16045063 16045217 -181150215 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 8 707 552 186 59 42 chr1 16045539 16045657 -181149775 - PB1D9 SINE Alu 0 120 1 8 707 683 54 0 11 chr1 16045875 16045969 -181149463 + B1_Mus1 SINE Alu 2 94 -54 8 707 367 206 9 47 chr1 16045876 16045983 -181149449 + ID_B1 SINE B4 84 186 -38 8 707 405 0 0 0 chr1 16046029 16046074 -181149358 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 707 299 330 12 2 chr1 16046116 16046210 -181149222 + MLT1A1 LTR MaLR 226 338 -70 9 707 247 270 40 13 chr1 16047297 16047372 -181148060 + ID4_ SINE ID 7 83 0 9 707 462 319 16 16 chr1 16048781 16048966 -181146466 + MER58A DNA MER1_type 40 224 0 9 707 465 252 17 25 chr1 16049502 16049620 -181145812 + PB1D10 SINE Alu 1 117 0 9 707 477 225 18 9 chr1 16050668 16050780 -181144652 + B1_Mur3 SINE Alu 9 121 -28 9 707 1086 78 18 6 chr1 16050780 16050947 -181144485 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 9 707 185 154 26 0 chr1 16050961 16051000 -181144432 + GA-rich Low_complexity Low_complexity 4 43 0 9 707 318 271 112 0 chr1 16051208 16051315 -181144117 + B3A SINE B2 2 120 -78 9 707 4484 61 2 0 chr1 16051536 16052095 -181143337 + L1_Mus2 LINE L1 6007 6566 0 9 707 564 196 161 19 chr1 16052116 16052277 -181143155 + B3 SINE B2 27 210 -6 1 707 358 282 0 0 chr1 16052490 16052575 -181142857 + ID_B1 SINE B4 111 195 -29 1 707 1662 102 120 20 chr1 16052577 16052903 -181142529 - ORR1A4 LTR MaLR -13 357 1 1 707 1459 70 22 0 chr1 16052910 16053095 -181142337 - B2_Mm2 SINE B2 -6 189 1 1 707 390 317 139 35 chr1 16053192 16053365 -181142067 + B3A SINE B2 8 198 0 1 707 863 213 32 215 chr1 16053825 16054286 -181141146 + ORR1C1 LTR MaLR 2 378 0 1 707 447 268 111 18 chr1 16055168 16055339 -181140093 - B3A SINE B2 -3 195 9 1 707 398 267 95 0 chr1 16055398 16055503 -181139929 - PB1D10 SINE Alu 0 117 3 1 707 282 274 0 0 chr1 16055653 16055715 -181139717 + ID SINE ID 14 75 -149 1 707 21 0 0 0 chr1 16055716 16055737 -181139695 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 1338 65 31 26 chr1 16055742 16055906 -181139526 + B2_Mm2 SINE B2 2 162 -33 1 707 180 0 0 0 chr1 16055906 16055926 -181139506 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 707 1338 65 31 26 chr1 16055926 16055952 -181139480 + B2_Mm2 SINE B2 163 193 -2 1 707 24 85 0 0 chr1 16055964 16056023 -181139409 + AT_rich Low_complexity Low_complexity 1 59 0 1 707 2680 65 2 28 chr1 16056961 16057306 -181138126 + MTA_Mm LTR MaLR 1 343 -53 1 707 2858 41 9 3 chr1 16057306 16057648 -181137784 + ORR1A1 LTR MaLR 3 346 0 1 707 2680 65 2 28 chr1 16057648 16057695 -181137737 + MTA_Mm LTR MaLR 344 383 -13 1 707 937 28 5 253 chr1 16057778 16057972 -181137460 + B1_Mm SINE Alu 2 147 0 1 707 577 184 186 58 chr1 16058006 16058162 -181137270 + B2_Mm2 SINE B2 1 176 -19 1 707 233 234 0 0 chr1 16058171 16058218 -181137214 + GA-rich Low_complexity Low_complexity 2 48 0 1 707 856 214 9 65 chr1 16058218 16058433 -181136999 + B3 SINE B2 7 209 -7 1 707 242 319 27 0 chr1 16058732 16058836 -181136596 + B1F SINE Alu 1 107 -13 1 707 1332 91 0 26 chr1 16059179 16059370 -181136062 + B2_Mm2 SINE B2 1 186 -9 1 707 664 247 49 0 chr1 16065015 16065177 -181130255 - ID_B1 SINE B4 -52 172 3 1 707 911 176 0 0 chr1 16065456 16065604 -181129828 - B1_Mur1 SINE Alu 0 149 2 1 707 761 240 66 10 chr1 16065849 16066047 -181129385 + B3 SINE B2 2 210 -6 1 707 991 100 43 0 chr1 16066055 16066195 -181129237 + B1_Mus2 SINE Alu 2 147 0 1 707 295 187 66 13 chr1 16066237 16066313 -181129119 + ID_B1 SINE B4 136 215 -9 1 707 423 309 106 5 chr1 16066329 16066518 -181128914 + ID_B1 SINE B4 2 209 -15 1 707 404 362 6 26 chr1 16066709 16066865 -181128567 + MTD LTR MaLR 50 202 -217 1 707 879 233 15 0 chr1 16066871 16067073 -181128359 + B3 SINE B2 7 211 -5 1 707 521 226 129 7 chr1 16067085 16067232 -181128200 + MTD LTR MaLR 199 363 -56 1 707 901 129 13 26 chr1 16067370 16067521 -181127911 - B1_Mur3 SINE Alu 0 149 1 1 707 26 0 0 0 chr1 16067529 16067555 -181127877 + AT_rich Low_complexity Low_complexity 1 26 0 1 707 288 0 0 0 chr1 16067555 16067587 -181127845 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 707 423 205 210 17 chr1 16067587 16067706 -181127726 - B3A SINE B2 -52 146 5 1 707 207 0 0 0 chr1 16067746 16067769 -181127663 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 707 400 292 26 17 chr1 16067772 16067887 -181127545 - B1F SINE Alu -7 142 27 1 707 445 281 0 10 chr1 16067985 16068089 -181127343 - PB1D10 SINE Alu 0 117 15 1 707 358 341 48 0 chr1 16068008 16068175 -181127257 - ID_B1 SINE B4 -48 176 2 1 707 450 53 0 0 chr1 16068465 16068522 -181126910 + (TAAAA)n Simple_repeat Simple_repeat 2 58 0 1 707 377 308 30 8 chr1 16069003 16069137 -181126295 + B1F SINE Alu 5 141 -8 1 707 350 231 83 46 chr1 16069598 16069707 -181125725 - PB1D10 SINE Alu 0 117 5 1 707 682 189 11 0 chr1 16069745 16069920 -181125512 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 707 211 195 0 0 chr1 16070206 16070247 -181125185 + B3A SINE B2 1 41 -157 1 707 1227 61 0 0 chr1 16070248 16070395 -181125037 + B1_Mm SINE Alu 1 147 0 1 707 483 280 19 10 chr1 16070444 16070593 -181124839 + ID_B1 SINE B4 83 223 -1 1 707 364 161 32 0 chr1 16070595 16070657 -181124775 + B1F1 SINE Alu 79 142 -7 1 707 357 304 7 62 chr1 16071194 16071210 -181124222 - ID_B1 SINE B4 -3 221 86 1 707 707 197 8 8 chr1 16071210 16071338 -181124094 - B1_Mur1 SINE Alu -17 132 5 1 707 352 223 97 0 chr1 16071431 16071534 -181123898 - ID_B1 SINE B4 -8 216 104 1 707 230 274 132 33 chr1 16071534 16071552 -181123880 - B1F SINE Alu -8 141 9 1 707 736 200 28 0 chr1 16071726 16071871 -181123561 + B1_Mur2 SINE Alu 1 149 0 1 707 447 287 47 0 chr1 16072245 16072374 -181123058 + B1_Mur2 SINE Alu 1 135 -14 1 707 370 248 86 0 chr1 16072387 16072492 -181122940 + ID_B1 SINE B4 104 217 -7 1 707 769 20 0 20 chr1 16072496 16072597 -181122835 + (TTC)n Simple_repeat Simple_repeat 2 100 0 1 707 895 170 0 0 chr1 16072690 16072831 -181122601 + B1_Mur3 SINE Alu 3 143 -6 1 707 365 321 122 0 chr1 16072860 16072991 -181122441 - RSINE1 SINE B4 -17 148 2 1 707 1474 296 69 81 chr1 16073164 16074334 -181121098 - L1M2 LINE L1 -2832 3311 2130 1 707 719 189 16 0 chr1 16074334 16074461 -181120971 - B1_Mur4 SINE Alu -15 135 7 1 707 580 261 8 0 chr1 16074566 16074685 -181120747 - B3A SINE B2 -78 120 1 1 707 391 294 16 16 chr1 16074688 16074816 -181120616 - ID_B1 SINE B4 -1 223 96 1 707 186 133 0 0 chr1 16074816 16074846 -181120586 + (T)n Simple_repeat Simple_repeat 1 30 0 1 707 1189 75 0 0 chr1 16074897 16075044 -181120388 - B1_Mus1 SINE Alu 0 148 2 1 707 436 280 59 20 chr1 16075310 16075463 -181119969 - RSINE1 SINE B4 -4 161 3 1 707 2703 133 69 93 chr1 16075965 16076086 -181119346 + RMER19C LTR ERVK 1 103 -508 1 707 252 0 0 0 chr1 16076086 16076114 -181119318 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 707 2703 133 69 93 chr1 16076114 16076612 -181118820 + RMER19C LTR ERVK 104 605 -6 1 707 189 0 0 0 chr1 16076949 16076970 -181118462 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 707 315 0 0 0 chr1 16076970 16077004 -181118428 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 707 593 219 78 0 chr1 16078129 16078257 -181117175 - B1_Mur3 SINE Alu -10 139 2 1 707 268 383 6 19 chr1 16078336 16078493 -181116939 - RSINE1 SINE B4 -9 156 2 1 707 31 34 0 33 chr1 16078501 16078522 -181116910 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 1157 68 7 0 chr1 16078522 16078668 -181116764 - B1_Mus1 SINE Alu 0 148 2 1 707 31 34 0 33 chr1 16078668 16078706 -181116726 + AT_rich Low_complexity Low_complexity 1 37 0 1 707 806 88 29 0 chr1 16078767 16078903 -181116529 + L1_Mus3 LINE L1 6498 6637 -1 1 707 363 283 94 0 chr1 16078904 16079010 -181116422 + B3A SINE B2 28 143 -55 1 707 545 170 0 0 chr1 16079059 16079153 -181116279 - B3 SINE B2 -120 96 3 1 707 306 236 0 0 chr1 16079175 16079247 -181116185 + L1M5 LINE L1 5628 5699 -425 1 707 1421 31 4 4 chr1 16079836 16080290 -181115142 + (TG)n Simple_repeat Simple_repeat 1 454 0 1 707 246 315 43 35 chr1 16080366 16080481 -181114951 - PB1D10 SINE Alu -1 116 1 1 707 917 71 0 8 chr1 16080970 16081098 -181114334 + B2_Mm2 SINE B2 3 129 -66 1 707 243 79 0 0 chr1 16081335 16081373 -181114059 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 707 1185 48 0 7 chr1 16081373 16081510 -181113922 - B1_Mus2 SINE Alu -9 138 2 1 707 1274 20 0 7 chr1 16083875 16084023 -181111409 + B1_Mm SINE Alu 1 147 0 1 707 574 269 172 40 chr1 16084617 16084919 -181110513 - MLT1A1 LTR MaLR -66 342 1 1 707 702 184 35 21 chr1 16085051 16085195 -181110237 - B1_Mus1 SINE Alu -2 146 1 1 707 301 250 0 33 chr1 16085114 16085205 -181110227 - MT2B2 LTR ERVL -344 240 153 1 707 251 54 27 0 chr1 16085215 16085252 -181110180 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 707 370 309 98 51 chr1 16085307 16085522 -181109910 - B4A SINE B4 -58 234 10 1 707 536 265 39 19 chr1 16085843 16085997 -181109435 + RSINE1 SINE B4 3 159 -6 1 707 374 326 43 43 chr1 16086046 16086184 -181109248 + RSINE1 SINE B4 21 158 -7 1 707 198 0 0 0 chr1 16086213 16086235 -181109197 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 707 1159 65 0 0 chr1 16086389 16086528 -181108904 + B1_Mus1 SINE Alu 2 140 -8 1 707 234 0 0 0 chr1 16086528 16086554 -181108878 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 707 426 127 0 0 chr1 16086621 16086692 -181108740 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 707 1455 163 42 125 chr1 16086748 16087058 -181108374 + ORR1B1 LTR MaLR 41 353 -41 1 707 1055 76 21 0 chr1 16087058 16087203 -181108229 + B1_Mus1 SINE Alu 1 148 0 1 707 1455 163 42 125 chr1 16087203 16087277 -181108155 + ORR1B1 LTR MaLR 354 393 -1 1 707 1173 48 7 0 chr1 16087720 16087865 -181107567 - B1_Mus2 SINE Alu 0 147 2 1 707 389 252 163 30 chr1 16087987 16088122 -181107310 - RSINE1 SINE B4 -10 155 3 1 707 684 196 355 53 chr1 16088534 16088852 -181106580 - MTD LTR MaLR -1 418 5 1 707 245 132 56 19 chr1 16089307 16089361 -181106071 + RSINE1 SINE B4 2 57 -108 1 707 542 239 239 0 chr1 16089387 16089554 -181105878 - B3 SINE B2 -9 207 1 1 707 227 216 343 0 chr1 16089964 16090066 -181105366 + B1F1 SINE Alu 10 146 -3 1 707 314 232 83 24 chr1 16090220 16090304 -181105128 + B3A SINE B2 8 96 -102 2 707 253 185 298 21 chr1 16090339 16090433 -181104999 - PB1D9 SINE Alu 0 120 1 2 707 838 96 36 22 chr1 16090714 16090852 -181104580 + B1_Mus1 SINE Alu 9 148 0 2 707 437 153 204 48 chr1 16091559 16091662 -181103770 + PB1D9 SINE Alu 2 120 0 2 707 283 213 191 0 chr1 16092097 16092191 -181103241 + PB1D9 SINE Alu 1 112 -8 2 707 228 180 174 83 chr1 16092246 16092355 -181103077 + B4A SINE B4 3 121 -171 2 707 21 36 0 0 chr1 16092480 16092508 -181102924 + AT_rich Low_complexity Low_complexity 1 28 0 2 707 234 0 0 0 chr1 16094682 16094708 -181100724 + (T)n Simple_repeat Simple_repeat 1 26 0 2 707 228 250 0 61 chr1 16095317 16095415 -181100017 + (CGGGG)n Simple_repeat Simple_repeat 5 96 0 2 707 237 191 14 29 chr1 16095324 16095394 -181100038 + G-rich Low_complexity Low_complexity 3 71 0 2 707 25 0 0 0 chr1 16096929 16096954 -181098478 + GC_rich Low_complexity Low_complexity 1 25 0 2 707 289 229 57 0 chr1 16098923 16098993 -181096439 + ID4_ SINE ID 2 75 -8 2 707 504 171 101 65 chr1 16099519 16099657 -181095775 + B1_Mur2 SINE Alu 5 147 -2 2 707 1321 97 16 5 chr1 16099929 16100115 -181095317 - B2_Mm2 SINE B2 -7 188 1 2 707 634 69 61 0 chr1 16101459 16101590 -181093842 + (CA)n Simple_repeat Simple_repeat 1 139 0 2 707 183 80 0 0 chr1 16104997 16105022 -181090410 + (CGAG)n Simple_repeat Simple_repeat 4 28 0 2 707 378 0 0 0 chr1 16105881 16105923 -181089509 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 707 309 314 35 65 chr1 16108236 16108406 -181087026 - B4A SINE B4 -122 170 6 2 707 334 327 28 0 chr1 16108424 16108531 -181086901 - PB1D10 SINE Alu -7 110 1 2 707 354 23 0 0 chr1 16108531 16108574 -181086858 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 2 707 249 57 0 0 chr1 16108574 16108608 -181086824 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 2 707 212 304 0 0 chr1 16108827 16108873 -181086559 + ID4 SINE ID 3 48 -35 2 707 372 164 45 0 chr1 16108890 16109024 -181086408 + (CA)n Simple_repeat Simple_repeat 1 140 0 2 707 258 214 97 28 chr1 16109462 16109534 -181085898 - MER5B DNA MER1_type -100 78 2 2 707 1091 43 58 0 chr1 16109597 16109735 -181085697 - B1_Mus2 SINE Alu 0 147 2 2 707 1134 69 14 0 chr1 16111129 16111273 -181084159 + B1_Mus1 SINE Alu 3 148 0 2 707 1268 145 64 4 chr1 16111738 16111973 -181083459 + RLTR11A2 LTR ERVK 193 441 -86 2 707 468 278 210 0 chr1 16111997 16112159 -181083273 + B4 SINE B4 2 197 -95 2 707 222 174 0 0 chr1 16112159 16112205 -181083227 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 707 218 56 28 0 chr1 16112363 16112399 -181083033 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 2 707 1271 68 50 11 chr1 16115093 16115272 -181080160 - B2_Mm1t SINE B2 -3 190 5 2 707 256 336 19 28 chr1 16115673 16115780 -181079652 + Tigger5 DNA MER2_type 2 107 -2299 2 707 302 289 28 37 chr1 16115787 16115895 -181079537 + Tigger5 DNA MER2_type 2237 2343 -63 2 707 713 300 80 8 chr1 16115965 16116227 -181079205 + B4A SINE B4 1 281 -11 2 707 424 287 7 65 chr1 16119539 16119677 -181075755 + B1F2 SINE Alu 1 130 -19 2 707 264 219 31 0 chr1 16120369 16120433 -181074999 + ID4 SINE ID 2 67 -16 2 708 189 0 0 0 chr1 16124485 16124506 -181070926 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 708 763 102 0 14 chr1 16124550 16124689 -181070743 + (TG)n Simple_repeat Simple_repeat 2 138 0 2 708 217 363 7 69 chr1 16125555 16125569 -181069863 + ID_B1 SINE B4 86 159 -65 2 708 267 325 16 41 chr1 16125569 16125691 -181069741 + B1F SINE Alu 19 137 -12 2 708 248 254 47 16 chr1 16125705 16125769 -181069663 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 2 708 519 278 75 59 chr1 16127389 16127576 -181067856 + ID_B1 SINE B4 3 192 -32 2 708 278 370 67 0 chr1 16127646 16127765 -181067667 + MLT1C LTR MaLR 289 415 -52 2 708 277 267 40 0 chr1 16127768 16127843 -181067589 - ID4_ SINE ID -3 80 3 2 708 337 283 0 11 chr1 16128000 16128093 -181067339 - ID_B1 SINE B4 -42 182 91 2 708 531 246 14 21 chr1 16128111 16128252 -181067180 + B1_Mur3 SINE Alu 1 140 -9 2 708 2368 146 145 10 chr1 16130002 16130485 -181064947 + RMER4B LTR ERVK 33 580 -5 2 708 318 284 12 0 chr1 16130510 16130591 -181064841 + GA-rich Low_complexity Low_complexity 3 84 0 2 708 420 302 8 17 chr1 16130722 16130840 -181064592 + PB1D10 SINE Alu 1 117 0 2 708 26047 155 19 13 chr1 16131034 16136102 -181059330 + L1ME5 LINE L1 345 5873 -321 2 708 6506 127 31 1 chr1 16136102 16137102 -181058330 + Lx2B LINE L1 5971 7000 0 2 708 877 337 52 18 chr1 16137102 16137114 -181058318 + L1ME5 LINE L1 5874 5889 -305 2 708 792 239 65 75 chr1 16137114 16137408 -181058024 + B4A SINE B4 2 292 0 2 708 877 337 52 18 chr1 16137408 16137510 -181057922 + L1ME5 LINE L1 5890 6006 -188 2 708 564 264 0 0 chr1 16137564 16137674 -181057758 + PB1 SINE Alu 13 122 -5 2 708 435 38 0 0 chr1 16137693 16137746 -181057686 + (CATA)n Simple_repeat Simple_repeat 1 53 0 2 708 253 281 98 34 chr1 16137750 16137930 -181057502 + L1MB1 LINE L1 5845 6054 -129 2 708 1178 34 0 7 chr1 16138020 16138168 -181057264 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 2 708 289 244 25 25 chr1 16138247 16138327 -181057105 - PB1 SINE Alu -2 125 46 2 708 293 117 333 0 chr1 16139564 16139624 -181055808 - ID4_ SINE ID -1 82 3 2 708 1294 277 77 8 chr1 16139780 16140272 -181055160 + L1MB8 LINE L1 5652 6177 -1 2 708 323 143 0 31 chr1 16140377 16140442 -181054990 + (CATA)n Simple_repeat Simple_repeat 1 63 0 2 708 372 280 20 10 chr1 16140460 16140561 -181054871 - RSINE1 SINE B4 -61 104 3 2 708 946 143 14 7 chr1 16141077 16141225 -181054207 + B1_Mur3 SINE Alu 1 149 0 2 708 810 116 29 6 chr1 16141720 16142033 -181053399 + (CA)n Simple_repeat Simple_repeat 1 320 0 2 708 378 0 0 0 chr1 16142071 16142113 -181053319 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 708 617 0 14 0 chr1 16142459 16142532 -181052900 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 2 708 524 129 24 0 chr1 16142532 16142617 -181052815 - B1_Mur3 SINE Alu -11 138 52 2 708 842 42 34 20 chr1 16142649 16142796 -181052636 - RMER17B LTR ERVK -498 460 312 2 708 442 162 43 0 chr1 16142916 16143033 -181052399 + GA-rich Low_complexity Low_complexity 4 125 0 2 708 393 117 0 0 chr1 16143671 16143731 -181051701 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 708 228 35 0 0 chr1 16144157 16144186 -181051246 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 708 1145 37 0 0 chr1 16144186 16144322 -181051110 - B1_Mus2 SINE Alu -11 136 1 2 708 1005 40 119 0 chr1 16144410 16144536 -181050896 + B1_Mm SINE Alu 2 142 -5 2 708 441 0 0 0 chr1 16144538 16144587 -181050845 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 708 324 240 78 59 chr1 16144693 16144795 -181050637 - B4 SINE B4 -93 199 96 2 708 375 211 0 0 chr1 16145109 16145187 -181050245 - AluG_3 SINE Alu -93 218 154 2 708 3787 124 66 5 chr1 16145345 16145983 -181049449 - RLTR33 LTR ERVK -1 677 1 2 708 207 0 0 0 chr1 16146223 16146246 -181049186 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 708 1145 129 73 0 chr1 16146256 16146434 -181048998 - B2_Mm2 SINE B2 -3 192 2 2 708 821 201 0 26 chr1 16146439 16146592 -181048840 - B1_Mur3 SINE Alu 0 149 1 2 708 698 276 33 0 chr1 16146896 16147077 -181048355 + Lx8 LINE L1 6873 7059 -414 2 708 266 204 185 0 chr1 16147172 16147280 -181048152 + Lx8 LINE L1 7344 7471 -2 2 708 722 251 82 43 chr1 16147304 16147512 -181047920 + B3 SINE B2 1 216 0 2 708 317 232 81 16 chr1 16147652 16147793 -181047639 + L1M3 LINE L1 5470 5619 -714 2 708 1092 255 69 30 chr1 16148246 16148581 -181046851 - MTD LTR MaLR -39 380 33 2 708 417 258 16 39 chr1 16148588 16148717 -181046715 + Tigger7 DNA MER2_type 2302 2427 -64 2 708 259 278 53 38 chr1 16148751 16148882 -181046550 + L1M3 LINE L1 5698 5830 -344 2 708 380 272 56 0 chr1 16148928 16149053 -181046379 + ID_B1 SINE B4 93 224 0 2 708 237 288 15 0 chr1 16149790 16149856 -181045576 - L2c LINE L2 -203 3184 3118 2 708 651 224 0 15 chr1 16149947 16150083 -181045349 + B1_Mur1 SINE Alu 7 140 -9 2 708 408 88 0 0 chr1 16150084 16150141 -181045291 + (CATA)n Simple_repeat Simple_repeat 2 58 0 2 708 689 246 16 16 chr1 16150233 16150415 -181045017 + B3A SINE B2 1 182 -16 2 708 918 190 107 5 chr1 16150517 16150713 -181044719 + B3 SINE B2 1 216 0 2 708 682 192 48 0 chr1 16150756 16150881 -181044551 - B1_Mus1 SINE Alu -7 141 11 2 708 354 305 34 34 chr1 16150881 16150894 -181044538 - ID_B1 SINE B4 -1 176 78 2 708 284 370 43 38 chr1 16150947 16151158 -181044274 + L1M5 LINE L1 5611 5822 -302 2 708 1346 80 0 22 chr1 16151288 16151468 -181043964 - B2_Mm2 SINE B2 -19 176 1 2 708 351 220 67 39 chr1 16151823 16151927 -181043505 + MTEb LTR MaLR 273 379 0 2 708 274 213 0 32 chr1 16151984 16152047 -181043385 + MLT1A0 LTR MaLR 299 359 -6 2 708 5832 114 21 14 chr1 16152680 16153550 -181041882 - Lx4A LINE L1 0 7058 6183 2 708 39817 42 7 1 chr1 16153772 16160108 -181035324 - L1Md_T LINE L1 0 6585 284 2 708 358 175 0 0 chr1 16161070 16161133 -181034299 + MTD LTR MaLR 1 63 -356 2 708 294 143 0 0 chr1 16161183 16161232 -181034200 + MTD LTR MaLR 48 96 -325 2 708 6258 54 3 1 chr1 16161232 16161998 -181033434 + L1_Mus3 LINE L1 5872 6638 0 2 708 1237 233 55 30 chr1 16162039 16162367 -181033065 + MTD LTR MaLR 84 419 0 2 708 309 51 0 0 chr1 16163619 16163658 -181031774 + (CAAAG)n Simple_repeat Simple_repeat 1 39 0 2 708 261 241 0 36 chr1 16163788 16163844 -181031588 + B1F1 SINE Alu 1 54 -95 2 708 378 0 0 0 chr1 16163873 16163915 -181031517 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 708 460 138 64 29 chr1 16164049 16164149 -181031283 + PB1D10 SINE Alu 16 116 -1 3 708 264 230 67 33 chr1 16164603 16164693 -181030739 + MLT1A1 LTR MaLR 1 93 -315 3 708 408 211 0 0 chr1 16164702 16164778 -181030654 + PB1D10 SINE Alu 32 107 -10 3 708 420 71 0 0 chr1 16164778 16164834 -181030598 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 708 600 14 0 0 chr1 16165062 16165131 -181030301 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 3 708 335 298 76 0 chr1 16165131 16165262 -181030170 - B1F SINE Alu -8 141 1 3 708 758 311 63 71 chr1 16165369 16165906 -181029526 - MT2A LTR ERVL 0 533 1 3 708 203 250 0 0 chr1 16165924 16165964 -181029468 + (CGTG)n Simple_repeat Simple_repeat 2 41 0 3 708 232 226 0 77 chr1 16165975 16166066 -181029366 - L1MC5 LINE L1 -275 7686 7603 3 708 349 272 45 45 chr1 16166161 16166315 -181029117 - RCHARR1 DNA MER1_type -3 971 818 3 708 263 295 0 13 chr1 16166552 16166631 -181028801 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 708 829 230 68 105 chr1 16166631 16166927 -181028505 - B4 SINE B4 0 292 8 3 708 791 261 39 5 chr1 16166959 16167167 -181028265 - B3 SINE B2 0 216 2 3 708 778 148 29 36 chr1 16167198 16167338 -181028094 + B1_Mur4 SINE Alu 1 139 -11 3 708 243 0 0 0 chr1 16167347 16167374 -181028058 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 708 503 214 75 201 chr1 16167407 16167741 -181027691 - RCHARR1 DNA MER1_type -500 474 183 3 708 216 0 0 0 chr1 16170516 16170540 -181024892 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 708 1134 44 0 0 chr1 16170671 16170808 -181024624 + B1_Mm SINE Alu 2 138 -9 3 708 486 0 0 0 chr1 16170808 16170862 -181024570 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 3 708 225 0 0 0 chr1 16170976 16171001 -181024431 + (T)n Simple_repeat Simple_repeat 1 25 0 3 708 184 97 0 0 chr1 16171803 16171834 -181023598 + MIRc SINE MIR 115 145 -123 3 708 2399 120 18 13 chr1 16171967 16172355 -181023077 + MTC LTR MaLR 32 421 0 3 708 321 343 9 0 chr1 16172527 16172635 -181022797 + MIR SINE MIR 77 185 -77 3 708 601 174 0 0 chr1 16174016 16174114 -181021318 + B1_Mur2 SINE Alu 1 98 -51 3 708 395 329 51 29 chr1 16174196 16174371 -181021061 + MLT1C LTR MaLR 216 394 -73 3 708 696 158 90 12 chr1 16175542 16175708 -181019724 - B2_Mm2 SINE B2 -14 181 3 3 708 516 292 70 14 chr1 16175821 16176036 -181019396 + L1MB4 LINE L1 5919 6145 -35 3 708 423 0 0 0 chr1 16176605 16176652 -181018780 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 708 24 0 0 0 chr1 16176940 16176964 -181018468 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 377 227 0 9 chr1 16177620 16177731 -181017701 + CT-rich Low_complexity Low_complexity 2 111 0 3 708 389 305 60 22 chr1 16177748 16177882 -181017550 - B1F SINE Alu -8 141 3 3 708 182 303 26 26 chr1 16178515 16178593 -181016839 + MIRm SINE MIR 92 169 -107 3 708 290 166 11 160 chr1 16178648 16178780 -181016652 + L1M3 LINE L1 5209 5326 -820 3 708 211 293 0 79 chr1 16178786 16178875 -181016557 + ID4 SINE ID 2 83 0 3 708 724 283 122 81 chr1 16178879 16179471 -181015961 + L1MB3 LINE L1 5338 5953 -230 3 708 189 315 0 0 chr1 16179521 16179575 -181015857 + MIRc SINE MIR 166 219 -49 3 708 1070 162 151 11 chr1 16179579 16179860 -181015572 + ORR1B2 LTR MaLR 1 374 0 3 708 5465 31 8 6 chr1 16179931 16180575 -181014857 + L1Md_F3 LINE L1 5940 6584 0 3 708 545 175 0 30 chr1 16182024 16182124 -181013308 + B1_Mur1 SINE Alu 53 149 0 3 708 243 283 79 20 chr1 16182561 16182662 -181012770 + MLT1A1 LTR MaLR 297 403 -5 3 708 297 0 0 0 chr1 16182952 16182985 -181012447 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 708 26 30 0 0 chr1 16183191 16183224 -181012208 + AT_rich Low_complexity Low_complexity 1 33 0 3 708 688 230 83 42 chr1 16185202 16185442 -181009990 + MER2 DNA MER2_type 75 324 -21 3 708 186 43 0 0 chr1 16185495 16185518 -181009914 + (CAT)n Simple_repeat Simple_repeat 1 23 0 3 708 348 64 0 0 chr1 16185536 16185583 -181009849 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 708 1263 34 0 0 chr1 16185662 16185808 -181009624 + B1_Mus2 SINE Alu 2 147 0 3 708 198 136 0 0 chr1 16185829 16185873 -181009559 + (A)n Simple_repeat Simple_repeat 1 44 0 3 708 235 207 0 65 chr1 16185884 16185946 -181009486 - CR1_Mam LINE CR1 -840 1364 1307 3 708 781 108 108 0 chr1 16186312 16186441 -181008991 + B1_Mus1 SINE Alu 6 148 0 3 708 213 119 0 0 chr1 16186507 16186549 -181008883 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 708 535 291 82 5 chr1 16186939 16187132 -181008300 + MER2 DNA MER2_type 15 223 -122 3 708 2332 32 11 4 chr1 16187132 16187412 -181008020 + L1Md_F3 LINE L1 6303 6584 0 3 708 535 291 82 5 chr1 16187412 16187425 -181008007 + MER2 DNA MER2_type 224 236 -109 3 708 714 251 15 53 chr1 16187479 16187685 -181007747 + B3A SINE B2 1 198 0 3 708 324 346 25 56 chr1 16187824 16187986 -181007446 - RSINE1 SINE B4 -1 164 8 3 708 252 0 0 0 chr1 16188045 16188073 -181007359 + (T)n Simple_repeat Simple_repeat 1 28 0 3 708 415 350 31 18 chr1 16188280 16188507 -181006925 + L1M5 LINE L1 4562 4791 -1355 3 708 198 0 0 0 chr1 16189096 16189118 -181006314 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 708 3614 214 45 42 chr1 16189164 16190023 -181005409 + Lx9 LINE L1 6362 7223 -421 3 708 695 238 120 9 chr1 16190014 16190230 -181005202 + Lx9 LINE L1 7363 7602 -42 3 708 1196 241 141 0 chr1 16190331 16190651 -181004781 + MTD LTR MaLR 1 365 -54 3 708 21 0 0 0 chr1 16190886 16190907 -181004525 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 227 0 93 0 chr1 16190907 16190950 -181004482 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 708 1185 62 0 0 chr1 16190954 16191098 -181004334 - B1_Mus1 SINE Alu -1 147 4 3 708 456 77 0 0 chr1 16191165 16191230 -181004202 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 708 584 211 104 88 chr1 16191230 16191412 -181004020 - B4 SINE B4 -36 256 72 3 708 248 313 16 80 chr1 16191406 16191531 -181003901 - B4A SINE B4 -174 118 2 3 708 1261 74 51 0 chr1 16191559 16191734 -181003698 + B2_Mm2 SINE B2 3 186 -9 3 708 29 47 0 0 chr1 16191845 16191888 -181003544 + AT_rich Low_complexity Low_complexity 1 43 0 3 708 295 302 246 6 chr1 16193003 16193186 -181002246 + L1MC4 LINE L1 7412 7638 -404 3 708 254 180 32 16 chr1 16193293 16193355 -181002077 + L1MC4 LINE L1 7760 7822 -220 3 708 3360 87 12 17 chr1 16193375 16193855 -181001577 - Lx3_Mus LINE L1 -11 6998 6521 3 708 311 259 52 0 chr1 16193869 16193985 -181001447 - BC1_Mm scRNA scRNA -29 123 2 3 708 769 302 33 4 chr1 16194082 16194325 -181001107 + B4A SINE B4 2 251 -41 3 708 313 346 96 29 chr1 16194326 16194534 -181000898 - MTEa LTR MaLR -131 248 27 3 708 299 80 40 0 chr1 16194688 16194738 -181000694 + (CAAAAA)n Simple_repeat Simple_repeat 4 55 0 3 708 486 0 0 0 chr1 16194837 16194891 -181000541 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 708 202 62 0 59 chr1 16195033 16195067 -181000365 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 3 708 384 295 15 69 chr1 16195557 16195598 -180999834 - PB1 SINE Alu -3 124 90 3 708 2967 24 0 6 chr1 16195598 16195937 -180999495 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 708 384 295 15 69 chr1 16195937 16196026 -180999406 - PB1 SINE Alu -38 89 1 3 708 1752 130 135 23 chr1 16196121 16196468 -180998964 + ORR1B1 LTR MaLR 1 386 -8 3 708 188 77 0 114 chr1 16196478 16196522 -180998910 + T-rich Low_complexity Low_complexity 1 39 0 3 708 1244 34 7 0 chr1 16196525 16196671 -180998761 - B1_Mus2 SINE Alu 0 147 1 3 708 330 291 119 0 chr1 16197195 16197329 -180998103 - L2c LINE L2 -5 3382 3233 3 708 246 288 14 14 chr1 16197449 16197523 -180997909 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 708 327 85 0 0 chr1 16197554 16197601 -180997831 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 708 594 290 140 41 chr1 16198258 16198628 -180996804 + L1M4 LINE L1 2177 2562 -3584 3 708 883 168 0 7 chr1 16198628 16198778 -180996654 + B1_Mur4 SINE Alu 1 149 -1 3 708 594 290 140 41 chr1 16198778 16199630 -180995802 + L1M4 LINE L1 2563 3519 -2627 3 708 267 273 119 36 chr1 16199671 16199865 -180995567 + L1M4 LINE L1 3510 3719 -2427 3 708 973 225 14 5 chr1 16199867 16200081 -180995351 - B3 SINE B2 0 216 1 3 708 242 325 41 0 chr1 16200206 16200329 -180995103 + L1MB3 LINE L1 6056 6183 0 3 708 389 229 69 38 chr1 16200376 16200517 -180994915 + L1M4 LINE L1 5340 5477 -685 3 708 302 297 70 26 chr1 16200556 16200670 -180994762 + L1M4 LINE L1 5437 5555 -623 3 708 577 115 11 0 chr1 16201003 16201090 -180994342 - Lx9 LINE L1 -167 7477 7390 3 708 753 241 32 16 chr1 16201234 16201424 -180994008 - B3A SINE B2 -5 193 1 3 708 225 305 179 32 chr1 16201452 16201608 -180993824 - ORR1E LTR MaLR -180 179 1 3 708 703 273 22 60 chr1 16201826 16202103 -180993329 + MTE2a LTR MaLR 10 248 -131 3 708 357 339 5 58 chr1 16202114 16202141 -180993291 - MERVK26-int LTR ERVK -258 6661 6484 3 708 669 256 12 6 chr1 16202141 16202302 -180993130 - RodERV21-int LTR ERV1 -422 4569 4408 3 708 396 40 0 0 chr1 16202455 16202505 -180992927 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 708 356 274 21 0 chr1 16202619 16202714 -180992718 - B4A SINE B4 -195 97 1 3 708 318 354 0 0 chr1 16202714 16202806 -180992626 + MER58A DNA MER1_type 42 133 -91 3 708 1064 249 56 85 chr1 16203156 16203546 -180991886 + MTEa LTR MaLR 1 379 0 3 708 183 412 15 0 chr1 16203660 16203728 -180991704 + L2b LINE L2 3267 3335 -40 3 708 428 211 103 84 chr1 16203909 16204064 -180991368 - MER102b DNA MER1_type -183 158 1 3 708 217 306 0 0 chr1 16204064 16204136 -180991296 - L3 LINE CR1 -1135 3354 3283 3 708 557 267 148 45 chr1 16204802 16205149 -180990283 - L1ME2z LINE L1 -277 6167 5790 3 708 2144 86 19 16 chr1 16205149 16205457 -180989975 + RLTR27 LTR ERVK 1 309 0 4 708 557 267 148 45 chr1 16205457 16205526 -180989906 - L1ME2z LINE L1 -655 5789 5716 3 708 324 48 0 0 chr1 16205526 16205568 -180989864 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 708 557 267 148 45 chr1 16205568 16205664 -180989768 - L1ME2z LINE L1 -729 5715 5602 3 708 383 228 48 19 chr1 16205697 16205800 -180989632 + PB1D7 SINE Alu 9 114 -6 4 708 313 318 24 0 chr1 16207180 16207265 -180988167 + MER81 DNA AcHobo 26 112 -2 4 708 353 22 0 21 chr1 16207830 16207877 -180987555 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 708 249 109 0 0 chr1 16209201 16209247 -180986185 + (T)n Simple_repeat Simple_repeat 1 46 0 4 708 211 291 120 151 chr1 16209447 16209533 -180985899 + B4A SINE B4 4 85 -207 4 708 645 240 126 0 chr1 16209533 16209708 -180985724 + B3A SINE B2 1 197 -1 4 708 228 291 120 151 chr1 16209708 16209905 -180985527 + B4 SINE B4 81 278 -14 4 708 414 0 0 0 chr1 16209929 16209975 -180985457 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 708 418 322 79 61 chr1 16210421 16210885 -180984547 - MLT1G1 LTR MaLR -1 578 1 4 708 516 289 131 15 chr1 16211441 16211701 -180983731 - RMER15 LTR ERVL -6 569 280 4 708 228 143 0 0 chr1 16211899 16211941 -180983491 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 4 708 406 314 56 37 chr1 16211963 16212125 -180983307 - B4A SINE B4 -127 165 1 4 708 907 161 0 11 chr1 16212469 16212651 -180982781 + GA-rich Low_complexity Low_complexity 1 180 0 4 708 1042 185 98 0 chr1 16212894 16213099 -180982333 - URR1A DNA MER1_type -1 225 1 4 708 214 318 79 11 chr1 16213468 16213557 -180981875 + MIRm SINE MIR 178 272 -4 4 708 309 333 128 27 chr1 16213577 16213796 -180981636 - MIR SINE MIR 0 262 22 4 708 376 215 161 69 chr1 16213806 16213936 -180981496 - B3A SINE B2 0 198 57 4 708 285 29 0 0 chr1 16213952 16213986 -180981446 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 708 717 165 21 70 chr1 16213989 16214132 -180981300 - B1_Mur3 SINE Alu -13 136 1 4 708 207 0 0 0 chr1 16215931 16215954 -180979478 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 708 591 300 6 6 chr1 16216144 16216305 -180979127 - RSINE1 SINE B4 -3 162 2 4 708 243 309 38 76 chr1 16216733 16216838 -180978594 + B1F1 SINE Alu 6 106 -43 4 708 650 273 114 14 chr1 16216984 16217140 -180978292 - B4A SINE B4 -4 288 126 4 708 480 48 0 0 chr1 16217140 16217203 -180978229 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 708 650 273 114 14 chr1 16217203 16217265 -180978167 - B4A SINE B4 -167 125 49 4 708 198 103 0 0 chr1 16217856 16217885 -180977547 + (A)n Simple_repeat Simple_repeat 1 29 0 4 708 744 12 0 0 chr1 16220640 16220725 -180974707 + (GAA)n Simple_repeat Simple_repeat 2 86 0 4 708 569 246 7 7 chr1 16222328 16222463 -180972969 - ID_B1 SINE B4 0 224 90 4 708 892 234 175 22 chr1 16222470 16222863 -180972569 - L1MC2 LINE L1 -1915 6127 5657 4 708 264 245 71 0 chr1 16223098 16223196 -180972236 - Lx9 LINE L1 -127 7517 7413 4 708 327 365 0 14 chr1 16223335 16223474 -180971958 - ID_B1 SINE B4 0 224 88 4 708 1756 138 115 130 chr1 16223513 16223913 -180971519 + ORR1B1 LTR MaLR 1 394 0 4 708 240 295 31 10 chr1 16225341 16225437 -180969995 - MIRc SINE MIR -124 144 47 4 708 492 89 0 0 chr1 16227237 16227316 -180968116 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 708 183 42 0 0 chr1 16227396 16227420 -180968012 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 708 291 54 0 0 chr1 16227650 16227687 -180967745 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 708 441 50 0 0 chr1 16228262 16228322 -180967110 + (CCAA)n Simple_repeat Simple_repeat 3 62 0 4 708 552 216 0 8 chr1 16229007 16229124 -180966308 - PB1D9 SINE Alu -3 117 2 4 708 232 231 19 0 chr1 16229608 16229660 -180965772 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 708 1187 180 45 257 chr1 16229665 16230136 -180965296 + ORR1D1 LTR MaLR 1 371 -3 4 708 549 0 0 0 chr1 16230136 16230197 -180965235 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 708 498 282 89 36 chr1 16230445 16230730 -180964702 + MLT1E2 LTR MaLR 35 358 -147 4 708 212 268 0 18 chr1 16231324 16231381 -180964051 - L2c LINE L2 -3 3384 3329 4 708 402 115 0 0 chr1 16231522 16231583 -180963849 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 4 708 234 157 20 0 chr1 16232389 16232440 -180962992 - MER63D DNA AcHobo -718 343 292 4 708 23 0 0 0 chr1 16234651 16234674 -180960758 + AT_rich Low_complexity Low_complexity 1 23 0 4 708 432 261 71 71 chr1 16236808 16237006 -180958426 + L1MD LINE L1 5127 5324 -822 4 708 256 279 215 50 chr1 16237026 16237226 -180958206 + L1M5 LINE L1 5369 5601 -583 4 708 275 291 126 0 chr1 16237260 16237363 -180958069 + L1M5 LINE L1 5691 5806 -318 4 708 445 217 152 0 chr1 16237467 16237585 -180957847 - L1MD LINE L1 -508 5734 5595 4 708 186 71 0 0 chr1 16237586 16237614 -180957818 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 708 351 0 0 0 chr1 16238156 16238195 -180957237 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 708 365 310 168 20 chr1 16238242 16238295 -180957137 - B4A SINE B4 -4 288 225 4 708 185 0 40 0 chr1 16238295 16238320 -180957112 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 708 365 310 168 20 chr1 16238320 16238510 -180956922 - B4A SINE B4 -68 224 10 4 708 333 0 0 0 chr1 16239721 16239758 -180955674 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 708 369 0 0 0 chr1 16240458 16240499 -180954933 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 708 778 61 17 0 chr1 16241031 16241128 -180954304 + (TTC)n Simple_repeat Simple_repeat 1 99 0 4 708 1226 35 40 0 chr1 16241128 16241301 -180954131 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 708 778 61 17 0 chr1 16241301 16241318 -180954114 + (TTC)n Simple_repeat Simple_repeat 2 18 0 4 708 250 159 0 22 chr1 16241321 16241366 -180954066 + C-rich Low_complexity Low_complexity 1 44 0 4 708 231 280 97 0 chr1 16241695 16241788 -180953644 + B1F SINE Alu 48 149 0 4 708 293 218 25 13 chr1 16242265 16242344 -180953088 + ID4_ SINE ID 2 81 -2 4 708 26 50 0 0 chr1 16242388 16242428 -180953004 + AT_rich Low_complexity Low_complexity 1 40 0 4 708 782 208 281 46 chr1 16242514 16242842 -180952590 - MTD LTR MaLR -14 405 1 4 708 276 85 0 78 chr1 16243810 16243874 -180951558 + G-rich Low_complexity Low_complexity 5 63 0 4 708 303 366 22 28 chr1 16244003 16244183 -180951249 + L2c LINE L2 3050 3228 -159 4 708 855 55 0 0 chr1 16244367 16244476 -180950956 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 708 394 289 25 42 chr1 16245183 16245302 -180950130 - PB1D10 SINE Alu 0 117 1 4 708 396 0 0 0 chr1 16245346 16245390 -180950042 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 708 252 0 0 0 chr1 16245390 16245417 -180950015 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 708 452 276 37 15 chr1 16245424 16245560 -180949872 - B1F SINE Alu -9 140 2 4 708 207 0 0 0 chr1 16245594 16245617 -180949815 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 708 3763 60 18 30 chr1 16245621 16246124 -180949308 - L1Md_F2 LINE L1 -2 6580 6084 4 708 396 0 0 0 chr1 16247320 16247364 -180948068 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 708 2089 145 48 8 chr1 16249036 16249411 -180946021 - MTC LTR MaLR -8 413 24 4 708 975 112 0 0 chr1 16249623 16249775 -180945657 + (TCC)n Simple_repeat Simple_repeat 2 153 0 4 708 711 120 17 8 chr1 16249778 16249896 -180945536 - B1_Mur4 SINE Alu -6 144 26 4 708 1771 145 119 64 chr1 16250645 16251005 -180944427 - ORR1C2 LTR MaLR -4 380 1 4 708 537 16 0 0 chr1 16252545 16252607 -180942825 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 708 297 0 0 0 chr1 16252607 16252639 -180942793 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 709 366 277 0 0 chr1 16253235 16253318 -180942114 - ID4 SINE ID 0 83 1 4 709 232 252 154 10 chr1 16253432 16253536 -180941896 - PB1D7 SINE Alu -1 119 1 4 709 773 21 0 10 chr1 16253553 16253649 -180941783 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 4 709 1131 55 7 7 chr1 16253657 16253804 -180941628 - B1_Mm SINE Alu 0 147 1 4 709 195 100 0 0 chr1 16253870 16253900 -180941532 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 709 1099 124 0 48 chr1 16253902 16254088 -180941344 - B2_Mm2 SINE B2 -18 177 1 4 709 502 218 18 0 chr1 16254180 16254290 -180941142 - PB1D9 SINE Alu -8 112 1 4 709 205 175 0 0 chr1 16254574 16254614 -180940818 + GA-rich Low_complexity Low_complexity 2 41 0 4 709 503 165 125 76 chr1 16254639 16254783 -180940649 - B3A SINE B2 -47 151 1 4 709 256 257 69 10 chr1 16255101 16255203 -180940229 + L3 LINE CR1 130 237 -4252 4 709 275 207 52 0 chr1 16256604 16256662 -180938770 + MIRm SINE MIR 87 147 -129 4 709 440 246 26 17 chr1 16256865 16256981 -180938451 - PB1D10 SINE Alu 0 117 1 4 709 240 224 34 17 chr1 16257491 16257550 -180937882 + ID4 SINE ID 4 63 -20 4 709 198 0 0 0 chr1 16258032 16258054 -180937378 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 4 709 270 0 0 0 chr1 16258403 16258433 -180936999 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 709 374 57 19 0 chr1 16258433 16258486 -180936946 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 709 414 254 97 48 chr1 16261061 16261206 -180934226 + RSINE1 SINE B4 10 161 -4 4 709 578 224 7 0 chr1 16263319 16263466 -180931966 + GA-rich Low_complexity Low_complexity 1 148 0 4 709 305 0 50 0 chr1 16263470 16263510 -180931922 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 4 709 346 221 20 50 chr1 16263636 16263736 -180931696 - PB1D9 SINE Alu -2 118 22 4 709 908 215 0 20 chr1 16264159 16264354 -180931078 - B3 SINE B2 -25 191 1 4 709 260 333 0 0 chr1 16265273 16265348 -180930084 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 709 272 70 23 0 chr1 16265478 16265521 -180929911 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 709 293 302 79 8 chr1 16265749 16265876 -180929556 - L1MB3 LINE L1 0 6180 6045 5 709 571 270 147 28 chr1 16265950 16266201 -180929231 - L1MB3 LINE L1 -286 5897 5617 5 709 642 312 63 21 chr1 16266234 16266614 -180928818 - L1M5 LINE L1 -3314 2832 2437 5 709 228 111 0 0 chr1 16266664 16266700 -180928732 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 709 612 274 98 21 chr1 16266833 16267027 -180928405 + ID_B1 SINE B4 9 217 -7 5 709 2439 46 3 0 chr1 16267612 16267915 -180927517 - L1_Mus1 LINE L1 0 6567 6264 5 709 216 349 24 0 chr1 16268729 16268740 -180926692 - ID SINE ID -139 85 1 5 709 236 319 14 0 chr1 16268740 16268812 -180926620 - ID4 SINE ID -10 73 1 5 709 230 235 39 0 chr1 16268844 16268895 -180926537 - ID4_ SINE ID -10 73 21 5 709 25 0 0 0 chr1 16270616 16270641 -180924791 + AT_rich Low_complexity Low_complexity 1 25 0 5 709 186 71 0 0 chr1 16270689 16270717 -180924715 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 709 953 186 27 50 chr1 16271095 16271316 -180924116 + B3 SINE B2 1 216 0 5 709 483 18 0 0 chr1 16271586 16271642 -180923790 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 709 289 240 115 0 chr1 16271886 16271982 -180923450 + PB1D10 SINE Alu 9 115 -2 5 709 24 0 0 0 chr1 16272815 16272839 -180922593 + AT_rich Low_complexity Low_complexity 1 24 0 5 709 258 306 10 54 chr1 16272877 16273022 -180922410 + ID4_ SINE ID 3 139 -13 5 709 20051 146 20 40 chr1 16273806 16277173 -180918259 + L1_Mus4 LINE L1 562 3936 -1947 5 709 1212 54 0 0 chr1 16277173 16277320 -180918112 + B1_Mm SINE Alu 1 147 0 5 709 20051 134 32 37 chr1 16277320 16280154 -180915278 + L1_Mus4 LINE L1 3937 6636 0 5 709 3800 91 10 13 chr1 16280157 16280767 -180914665 + MusHAL1 LINE L1 800 1407 -1305 5 709 5132 108 43 2 chr1 16280765 16281598 -180913834 + Lx2 LINE L1 5768 6634 -363 5 709 1499 96 17 4 chr1 16281598 16281828 -180913604 + Lx2 LINE L1 6765 6997 0 5 709 31 68 0 0 chr1 16282166 16282225 -180913207 + AT_rich Low_complexity Low_complexity 1 59 0 5 709 29 0 0 0 chr1 16283092 16283121 -180912311 + AT_rich Low_complexity Low_complexity 1 29 0 5 709 288 0 0 0 chr1 16284977 16285009 -180910423 + (A)n Simple_repeat Simple_repeat 1 32 0 5 709 220 250 16 32 chr1 16285582 16285644 -180909788 - MIR SINE MIR -124 138 78 5 709 258 330 0 0 chr1 16285748 16285842 -180909590 + C-rich Low_complexity Low_complexity 1 94 0 5 709 295 312 15 3 chr1 16286555 16286705 -180908727 + L1MC LINE L1 5585 5739 -385 5 709 237 295 78 0 chr1 16287010 16287139 -180908293 + L1M5 LINE L1 5073 5211 -935 5 709 400 260 76 118 chr1 16287186 16287474 -180907958 + L1M5 LINE L1 5283 5558 -606 5 709 351 308 26 0 chr1 16287498 16287615 -180907817 + L1M5 LINE L1 5624 5743 -701 5 709 239 0 0 31 chr1 16288578 16288610 -180906822 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 5 709 804 216 67 62 chr1 16288912 16289105 -180906327 + B3 SINE B2 23 216 0 5 709 556 312 0 7 chr1 16289430 16289569 -180905863 - ID_B1 SINE B4 -3 221 84 5 709 728 291 77 116 chr1 16290436 16290798 -180904634 + MLT2C1 LTR ERVL 1 348 -49 5 709 802 168 28 0 chr1 16291795 16291938 -180903494 - B1_Mus1 SINE Alu -1 147 1 5 709 1054 71 159 6 chr1 16293682 16293839 -180901593 + B2_Mm2 SINE B2 1 181 -14 5 709 206 159 32 0 chr1 16295303 16295366 -180900066 + A-rich Low_complexity Low_complexity 3 67 0 5 709 2137 58 7 14 chr1 16295692 16295987 -180899445 + MTA_Mm LTR MaLR 1 293 -103 5 709 352 352 60 9 chr1 16295987 16296205 -180899227 - L1MD LINE L1 -1506 4640 4412 5 709 368 279 48 10 chr1 16296363 16296564 -180898868 - L1MD LINE L1 -1954 4192 3971 5 709 242 172 118 0 chr1 16297124 16297192 -180898240 - L1MC1 LINE L1 0 6333 6254 5 709 1118 140 11 11 chr1 16297458 16297646 -180897786 + B2_Mm2 SINE B2 2 189 -6 5 709 227 338 0 0 chr1 16297661 16297674 -180897758 - BC1_Mm scRNA scRNA -66 86 16 5 709 332 190 0 0 chr1 16297674 16297732 -180897700 - tRNA-Ala-GCY_ tRNA tRNA -8 67 10 5 709 245 75 0 24 chr1 16298091 16298132 -180897300 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 709 25 31 0 0 chr1 16299488 16299520 -180895912 + AT_rich Low_complexity Low_complexity 1 32 0 5 709 466 314 162 11 chr1 16299538 16299828 -180895604 - MER58B DNA MER1_type -16 325 1 5 709 327 61 61 0 chr1 16300571 16300637 -180894795 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 5 709 558 298 76 6 chr1 16301008 16301180 -180894252 + B3 SINE B2 8 191 -25 5 709 912 248 181 21 chr1 16301642 16301968 -180893464 + MTEa LTR MaLR 2 379 0 5 709 316 304 60 43 chr1 16302634 16302655 -180892777 + B4 SINE B4 69 91 -201 5 709 529 217 27 13 chr1 16302655 16302766 -180892666 + B1F1 SINE Alu 1 108 -9 5 709 1369 175 41 91 chr1 16303563 16303939 -180891493 + ORR1C1 LTR MaLR 1 343 -51 5 709 24308 130 79 8 chr1 16303949 16306955 -180888477 + L1Md_F LINE L1 196 3280 -2603 5 709 925 86 7 52 chr1 16306955 16307090 -180888342 + B1_Mus1 SINE Alu 5 133 -15 5 709 525 32 0 0 chr1 16307091 16307154 -180888278 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 709 24308 107 81 5 chr1 16307154 16309224 -180886208 + L1Md_F LINE L1 3281 5648 -235 5 709 779 83 0 0 chr1 16309221 16309330 -180886102 - L1Md_F LINE L1 -1179 4704 4596 5 709 13985 120 11 84 chr1 16309328 16310334 -180885098 - L1Md_F LINE L1 -2040 3843 2869 5 709 907 88 7 22 chr1 16310334 16310349 -180885083 - B1_Mus2 SINE Alu 0 147 135 5 709 180 0 0 0 chr1 16310349 16310369 -180885063 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 709 907 88 7 22 chr1 16310369 16310492 -180884940 - B1_Mus2 SINE Alu -13 134 11 5 709 13985 120 11 84 chr1 16310492 16311038 -180884394 - L1Md_F LINE L1 -3015 2868 2367 5 709 4174 127 102 8 chr1 16311038 16311452 -180883980 + RMER17D2 LTR ERVK 5 454 -355 5 709 648 0 0 0 chr1 16311452 16311524 -180883908 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 709 4174 127 102 8 chr1 16311524 16311845 -180883587 + RMER17D2 LTR ERVK 455 809 0 5 709 13985 123 10 60 chr1 16311845 16313187 -180882245 - L1Md_F LINE L1 -3517 2366 1074 5 709 7374 53 4 10 chr1 16313220 16314641 -180880791 - L1Md_F2 LINE L1 -13 6569 5158 5 709 1964 210 68 12 chr1 16314633 16315134 -180880298 - L1Md_F LINE L1 -5529 1087 559 5 709 21 36 0 0 chr1 16316585 16316613 -180878819 + AT_rich Low_complexity Low_complexity 1 28 0 5 709 26 0 0 0 chr1 16317489 16317515 -180877917 + AT_rich Low_complexity Low_complexity 1 26 0 5 709 3970 52 6 44 chr1 16317761 16318301 -180877131 + L1Md_F2 LINE L1 6063 6581 -1 5 709 237 108 0 0 chr1 16318663 16318700 -180876732 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 709 1147 62 0 20 chr1 16318795 16318944 -180876488 - B1_Mus2 SINE Alu 0 147 2 5 709 320 344 112 73 chr1 16319332 16319868 -180875564 + L1MDa LINE L1 96 652 -5981 5 709 346 265 134 17 chr1 16320133 16320371 -180875061 + L1MDa LINE L1 1034 1299 -5334 5 709 202 250 0 0 chr1 16320416 16320460 -180874972 + A-rich Low_complexity Low_complexity 1 44 0 5 709 486 304 29 7 chr1 16320815 16320951 -180874481 + ID_B1 SINE B4 85 223 -1 5 709 251 190 0 33 chr1 16321042 16321102 -180874330 + L1MC4a LINE L1 7513 7570 -312 5 709 6205 49 25 1 chr1 16323339 16324122 -180871310 + L1Md_F2 LINE L1 5769 6570 -12 5 709 401 299 62 19 chr1 16324320 16324531 -180870901 + Lx8 LINE L1 7250 7469 -4 5 709 616 253 119 14 chr1 16324704 16324981 -180870451 + L1ME2 LINE L1 5624 5929 -235 5 709 218 295 173 73 chr1 16325353 16325384 -180870048 - B3A SINE B2 0 198 2 5 709 612 257 88 0 chr1 16325384 16325532 -180869900 - RSINE1 SINE B4 -2 163 3 5 709 590 270 24 5 chr1 16325920 16326073 -180869359 + ID_B1 SINE B4 85 237 -55 5 709 3298 46 2 0 chr1 16326214 16326609 -180868823 + MTA_Mm LTR MaLR 1 396 0 5 709 382 315 106 53 chr1 16326708 16326859 -180868573 + RSINE1 SINE B4 7 165 0 5 709 23 0 0 0 chr1 16327297 16327320 -180868112 + AT_rich Low_complexity Low_complexity 1 23 0 5 709 12702 80 46 6 chr1 16327897 16330460 -180864972 - L1VL2 LINE L1 -632 2983 312 5 709 195 114 0 0 chr1 16330743 16330778 -180864654 + (T)n Simple_repeat Simple_repeat 1 35 0 5 709 1111 56 13 34 chr1 16330779 16330928 -180864504 - B1_Mm SINE Alu 0 147 2 5 709 448 137 41 0 chr1 16330928 16331001 -180864431 + 4.5SRNA scRNA scRNA 3 78 -16 5 709 189 0 0 0 chr1 16331796 16331817 -180863615 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 709 417 191 71 0 chr1 16332595 16332692 -180862740 + B3A SINE B2 94 202 -14 5 709 852 181 2 0 chr1 16332703 16333237 -180862195 + (CA)n Simple_repeat Simple_repeat 1 535 0 5 709 276 185 0 0 chr1 16335474 16335528 -180859904 + GA-rich Low_complexity Low_complexity 2 55 0 5 709 2150 205 60 58 chr1 16336548 16336635 -180858797 - RMER1C Other Other 0 1342 1257 5 709 213 39 0 0 chr1 16336635 16336661 -180858771 + (CCCA)n Simple_repeat Simple_repeat 2 27 0 5 709 2150 205 60 58 chr1 16336661 16337142 -180858290 - RMER1C Other Other -86 1256 773 5 709 1355 209 50 25 chr1 16337145 16337425 -180858007 + RLTR25B LTR ERVK 1 287 -741 5 709 2263 141 103 38 chr1 16338156 16338575 -180856857 + RLTR41 LTR ERV1 1 446 0 5 709 260 280 150 17 chr1 16338585 16338705 -180856727 - MIRb SINE MIR -41 227 92 5 709 1199 190 161 24 chr1 16338709 16339038 -180856394 + ORR1D1 LTR MaLR 1 374 0 5 709 1236 54 0 0 chr1 16339119 16339266 -180856166 + B1_Mus1 SINE Alu 1 147 -1 5 709 480 106 0 0 chr1 16339267 16339352 -180856080 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 5 709 394 229 79 11 chr1 16339352 16339529 -180855903 + L1MDa LINE L1 1101 1289 -5344 5 709 207 309 0 0 chr1 16339593 16339648 -180855784 + GA-rich Low_complexity Low_complexity 5 59 0 5 709 201 94 0 0 chr1 16339648 16339680 -180855752 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 5 709 239 319 112 0 chr1 16339795 16339911 -180855521 + Tigger7 DNA MER2_type 205 333 -2158 5 709 3386 219 132 31 chr1 16339978 16341063 -180854369 + Lx9 LINE L1 6159 7352 -292 5 709 252 212 144 0 chr1 16341066 16341198 -180854234 + Lx9 LINE L1 7484 7634 -10 5 709 272 240 80 0 chr1 16341200 16341275 -180854157 + Tigger7 DNA MER2_type 963 1043 -1448 5 709 214 200 0 0 chr1 16341442 16341482 -180853950 + A-rich Low_complexity Low_complexity 1 40 0 5 709 7143 148 50 26 chr1 16341482 16342188 -180853244 - L1_Mur2 LINE L1 -2668 3209 2480 6 709 1153 56 28 0 chr1 16342188 16342332 -180853100 - B1_Mus1 SINE Alu 0 148 1 6 709 7143 148 50 26 chr1 16342332 16342739 -180852693 - L1_Mur2 LINE L1 -3398 2479 2057 6 709 330 26 0 0 chr1 16342739 16342778 -180852654 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 709 7143 148 50 26 chr1 16342778 16343138 -180852294 - L1_Mur2 LINE L1 -3821 2056 1701 6 709 5596 177 95 9 chr1 16343144 16344302 -180851130 + Lx5 LINE L1 5587 6843 -207 6 709 197 119 24 0 chr1 16344398 16344440 -180850992 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 709 388 251 136 21 chr1 16344457 16344648 -180850784 + L1MDa LINE L1 2504 2716 -3821 5 709 295 261 68 59 chr1 16344768 16344886 -180850546 + MER77 LTR ERVL 58 176 -431 6 709 916 339 97 20 chr1 16345316 16345901 -180849531 + L1M4b LINE L1 305 934 -6400 6 709 299 197 0 0 chr1 16345902 16345963 -180849469 + Lx7 LINE L1 6869 6929 -767 6 709 859 277 78 47 chr1 16346043 16346387 -180849045 + Lx5 LINE L1 6506 6860 -190 6 709 810 277 77 27 chr1 16346411 16346815 -180848617 + L1MB1 LINE L1 5721 6144 -24 6 709 201 316 89 0 chr1 16346973 16347052 -180848380 + MIR3 SINE MIR 110 195 -13 6 709 1221 253 111 12 chr1 16347637 16348225 -180847207 - L1M2 LINE L1 -1939 4906 4261 6 709 336 276 92 0 chr1 16348440 16348592 -180846840 - L1M2 LINE L1 -4224 2625 2460 6 709 237 65 0 0 chr1 16349220 16349251 -180846181 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 6 709 628 120 26 0 chr1 16349269 16349386 -180846046 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 6 709 591 274 196 12 chr1 16349510 16349749 -180845683 + MTC LTR MaLR 1 283 -138 6 709 4415 150 136 12 chr1 16349749 16350552 -180844880 - RMER19B LTR ERVK 0 902 1 6 709 378 281 141 0 chr1 16350552 16350659 -180844773 + MTC LTR MaLR 291 414 -5 6 709 1324 261 45 59 chr1 16350657 16351419 -180844013 + MTC-int LTR MaLR 25 862 -236 6 709 857 263 100 4 chr1 16351414 16351643 -180843789 + MTD LTR MaLR 169 419 0 6 709 187 158 100 50 chr1 16353663 16353723 -180841709 - L3b LINE CR1 -295 187 125 6 709 669 253 35 65 chr1 16353747 16353946 -180841486 + B3A SINE B2 2 194 -4 6 709 1124 52 0 0 chr1 16353954 16354090 -180841342 + B1_Mm SINE Alu 1 136 -11 6 709 198 0 0 0 chr1 16354090 16354112 -180841320 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 709 186 71 0 0 chr1 16354130 16354158 -180841274 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 709 317 303 0 0 chr1 16355021 16355097 -180840335 - ID4 SINE ID -2 81 6 6 709 1063 223 14 0 chr1 16355126 16355337 -180840095 + B3 SINE B2 3 216 0 6 709 34 0 0 0 chr1 16355585 16355619 -180839813 + AT_rich Low_complexity Low_complexity 1 34 0 6 709 341 111 32 0 chr1 16355622 16355685 -180839747 + (TATG)n Simple_repeat Simple_repeat 2 66 0 6 709 270 328 0 0 chr1 16355691 16355752 -180839680 + ID4_ SINE ID 2 62 -21 6 709 31 0 0 0 chr1 16355772 16355803 -180839629 + AT_rich Low_complexity Low_complexity 1 31 0 6 709 306 0 0 0 chr1 16356111 16356145 -180839287 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 709 268 173 0 55 chr1 16357264 16357319 -180838113 - ID4_ SINE ID -20 63 12 6 709 254 222 55 72 chr1 16357456 16357545 -180837887 + B3A SINE B2 2 93 -100 6 709 519 60 0 0 chr1 16357684 16357751 -180837681 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 709 850 288 51 99 chr1 16358109 16358544 -180836888 + MLT2D LTR ERVL 1 414 0 6 709 976 84 198 10 chr1 16358980 16359172 -180836260 - Lx LINE L1 0 6654 6427 6 709 261 352 0 0 chr1 16360407 16360478 -180834954 + ID4_ SINE ID 2 72 -11 6 709 302 299 86 46 chr1 16360981 16361132 -180834300 + B3A SINE B2 36 192 -6 6 709 294 287 54 0 chr1 16361223 16361352 -180834080 + L1M5 LINE L1 4573 4708 -1438 6 709 1437 65 16 0 chr1 16361455 16361640 -180833792 + B2_Mm2 SINE B2 1 188 -7 6 709 253 362 77 48 chr1 16361662 16361871 -180833561 + B4A SINE B4 16 230 -62 6 709 526 271 5 95 chr1 16363921 16364121 -180831311 - B3A SINE B2 -15 183 2 6 709 279 234 4 67 chr1 16365361 16365451 -180829981 + L1M5 LINE L1 5404 5488 -752 6 709 2304 145 86 0 chr1 16365471 16365857 -180829575 + MTC LTR MaLR 2 420 -1 6 709 396 259 135 34 chr1 16366306 16366454 -180828978 + RSINE1 SINE B4 1 163 -2 6 709 2319 226 80 5 chr1 16366620 16367206 -180828226 + Lx9 LINE L1 6168 6797 -847 6 709 2171 156 54 12 chr1 16367208 16367631 -180827801 + Lx9 LINE L1 6919 7359 -285 6 709 405 204 26 0 chr1 16367633 16367746 -180827686 + Lx9 LINE L1 7522 7637 -7 6 709 22 0 0 0 chr1 16367984 16368006 -180827426 + AT_rich Low_complexity Low_complexity 1 22 0 6 709 4182 134 54 14 chr1 16368016 16369126 -180826306 + L1VL1 LINE L1 236 1397 -2301 6 709 12949 78 36 5 chr1 16369208 16371236 -180824196 - L1VL2 LINE L1 -632 2983 897 6 709 3450 18 8 0 chr1 16371236 16371629 -180823803 - MTA_Mm LTR MaLR 0 396 1 6 709 9181 32 3 1 chr1 16371629 16372725 -180822707 - MTA_Mm-int LTR MaLR 0 1098 1 6 709 3450 18 8 0 chr1 16372725 16373118 -180822314 - MTA_Mm LTR MaLR 0 396 1 6 709 6414 96 35 14 chr1 16373118 16373976 -180821456 - L1VL2 LINE L1 -5439 896 11 6 709 22 56 0 0 chr1 16375263 16375299 -180820133 + AT_rich Low_complexity Low_complexity 1 36 0 6 709 4481 57 52 0 chr1 16375555 16376148 -180819284 - L1_Mus2 LINE L1 0 6566 5943 6 709 5923 63 10 1 chr1 16376266 16377066 -180818366 + L1Md_F2 LINE L1 4780 5586 -297 6 709 7640 67 3 12 chr1 16377068 16378069 -180817363 + L1Md_F2 LINE L1 5589 6580 -2 6 709 519 330 68 21 chr1 16378814 16379093 -180816339 + B4A SINE B4 1 292 0 6 709 210 204 23 0 chr1 16379100 16379144 -180816288 + (CATA)n Simple_repeat Simple_repeat 4 48 0 6 709 546 57 45 0 chr1 16379395 16379483 -180815949 + L1Md_F2 LINE L1 6491 6582 0 6 709 24 0 0 0 chr1 16379710 16379734 -180815698 + AT_rich Low_complexity Low_complexity 1 24 0 6 709 707 268 59 40 chr1 16381206 16381428 -180814004 + B4A SINE B4 2 227 -65 6 709 259 398 16 0 chr1 16381697 16381825 -180813607 - Tigger15a DNA TcMar -398 317 188 6 709 1332 94 21 0 chr1 16383414 16383605 -180811827 + B2_Mm2 SINE B2 1 195 0 6 709 295 270 0 13 chr1 16383708 16383783 -180811649 + ID2 SINE ID 3 76 -7 6 710 1259 275 83 42 chr1 16384955 16385597 -180809835 - L1MA5 LINE L1 -128 6172 5505 6 710 463 324 191 28 chr1 16386451 16387346 -180808086 - L2a LINE L2 -127 3299 2250 6 710 296 294 115 22 chr1 16387351 16387490 -180807942 - L2a LINE L2 -1301 2118 1967 6 710 205 200 0 22 chr1 16388798 16388844 -180806588 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 6 710 234 146 24 0 chr1 16389894 16389935 -180805497 + Charlie14a DNA MER1_type 423 464 -700 6 710 501 17 0 0 chr1 16390326 16390384 -180805048 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 710 225 146 49 0 chr1 16390895 16390936 -180804496 + MIRc SINE MIR 103 145 -123 6 710 217 336 104 0 chr1 16391783 16391908 -180803524 - MIR SINE MIR -123 139 2 6 710 233 239 0 0 chr1 16392017 16392063 -180803369 + CT-rich Low_complexity Low_complexity 1 46 0 6 710 1295 106 16 0 chr1 16392664 16392852 -180802580 + B2_Mm2 SINE B2 2 192 -3 6 710 21 36 0 0 chr1 16393543 16393571 -180801861 + AT_rich Low_complexity Low_complexity 1 28 0 6 710 4225 47 0 0 chr1 16393602 16394111 -180801321 - L1_Mus2 LINE L1 -1 6565 6057 6 710 3750 46 0 0 chr1 16394112 16394665 -180800767 + L1_Mus2 LINE L1 5503 6055 -511 6 710 285 109 0 0 chr1 16394923 16394969 -180800463 + (CATA)n Simple_repeat Simple_repeat 2 47 0 6 710 1057 145 5 5 chr1 16394969 16395170 -180800262 + Lx LINE L1 6442 6642 -12 6 710 225 0 0 0 chr1 16395170 16395195 -180800237 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6 710 504 212 25 0 chr1 16395241 16395349 -180800083 + Lx3_Mus LINE L1 6878 6988 -21 6 710 270 0 0 0 chr1 16395349 16395379 -180800053 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 710 2636 50 0 0 chr1 16395653 16395995 -180799437 - L1_Mus2 LINE L1 -498 6068 5727 6 710 3602 76 2 41 chr1 16395995 16396502 -180798930 + L1_Mus2 LINE L1 6079 6565 -1 6 710 612 149 44 0 chr1 16397365 16397479 -180797953 + PB1D9 SINE Alu 1 119 -1 6 710 180 97 0 0 chr1 16397734 16397765 -180797667 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 710 1106 44 0 0 chr1 16397777 16397913 -180797519 - B1_Mm SINE Alu 0 147 12 6 710 270 0 0 0 chr1 16399779 16399809 -180795623 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 710 832 285 32 102 chr1 16401187 16401239 -180794193 + B4 SINE B4 44 80 -212 6 710 531 204 7 22 chr1 16401239 16401374 -180794058 + B1_Mus1 SINE Alu 4 136 -12 6 710 258 32 0 0 chr1 16401374 16401405 -180794027 + (CAAAC)n Simple_repeat Simple_repeat 3 33 0 6 710 832 285 32 102 chr1 16401405 16401597 -180793835 + B4 SINE B4 81 271 -21 6 710 305 280 82 22 chr1 16401772 16401907 -180793525 + L1MEa LINE L1 21 163 -5907 6 710 441 183 121 9 chr1 16401947 16402063 -180793369 + L1MEa LINE L1 376 504 -5566 6 710 369 271 79 53 chr1 16402261 16402413 -180793019 + RSINE1 SINE B4 4 159 -6 6 710 476 305 13 32 chr1 16402684 16402840 -180792592 + RSINE1 SINE B4 2 154 -11 6 710 211 0 28 56 chr1 16403250 16403286 -180792146 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 710 227 197 49 0 chr1 16403525 16403586 -180791846 + (CATA)n Simple_repeat Simple_repeat 1 64 0 6 710 998 116 14 0 chr1 16403881 16404019 -180791413 - B1_Mur4 SINE Alu -9 141 2 6 710 1045 81 15 0 chr1 16404218 16404354 -180791078 + B1_Mus2 SINE Alu 2 139 -8 6 710 243 0 0 0 chr1 16404354 16404381 -180791051 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 710 1010 208 13 77 chr1 16404540 16404821 -180790611 - ORR1D1 LTR MaLR -2 357 118 6 710 748 252 18 150 chr1 16405008 16405398 -180790034 + L1VL1 LINE L1 4 496 -5926 6 710 941 221 19 19 chr1 16405509 16405776 -180789656 + L1_Mus3 LINE L1 670 936 -5680 6 710 27842 114 9 4 chr1 16405775 16409135 -180786297 + L1_Mus3 LINE L1 1346 4735 -1148 6 710 288 0 0 0 chr1 16409135 16409167 -180786265 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 710 27842 105 14 2 chr1 16409167 16411049 -180784383 + L1_Mus3 LINE L1 4736 6628 -10 6 710 32829 78 12 9 chr1 16411477 16417690 -180777742 - L1Md_F2 LINE L1 -1 6581 362 6 710 5147 44 30 0 chr1 16417744 16418376 -180777056 + L1Md_T LINE L1 5932 6582 0 6 710 519 322 92 26 chr1 16419110 16419381 -180776051 - Cheshire DNA MER1_type -2131 289 1 6 710 781 263 88 0 chr1 16419496 16419701 -180775731 - ID_B1 SINE B4 -1 223 1 6 710 307 296 102 44 chr1 16420002 16420303 -180775129 - L1M4 LINE L1 -1786 4360 4049 6 710 1025 196 71 5 chr1 16420303 16420513 -180774919 + URR1B DNA MER1_type 1 224 -1 7 710 293 313 114 22 chr1 16420513 16420829 -180774603 - L1M4 LINE L1 -2098 4048 3683 6 710 891 57 156 0 chr1 16420943 16421065 -180774367 + B1_Mus2 SINE Alu 1 141 -6 7 710 4341 132 65 9 chr1 16421497 16423077 -180772355 + L1Md_F LINE L1 184 1855 -4028 7 710 3632 52 0 2 chr1 16423078 16423524 -180771908 + L1_Mus1 LINE L1 6123 6567 0 7 710 377 278 35 87 chr1 16424087 16424260 -180771172 + RSINE1 SINE B4 2 165 0 7 710 850 198 145 21 chr1 16424447 16424633 -180770799 + B3 SINE B2 1 209 -7 7 710 332 322 8 94 chr1 16424837 16424964 -180770468 + PB1D10 SINE Alu 1 116 -1 7 710 378 294 8 107 chr1 16424986 16425108 -180770324 - PB1D10 SINE Alu -7 110 1 7 710 390 316 114 0 chr1 16425537 16425695 -180769737 + LTR83 LTR ERVL 582 757 -23 7 710 609 220 142 18 chr1 16426725 16426943 -180768489 + L1MA4A LINE L1 5680 5924 -379 7 710 219 295 33 0 chr1 16427160 16427221 -180768211 + B1F SINE Alu 73 135 -14 7 710 363 167 0 0 chr1 16427723 16427813 -180767619 + GA-rich Low_complexity Low_complexity 2 91 0 7 710 961 160 0 13 chr1 16428079 16428231 -180767201 + B1_Mur4 SINE Alu 1 150 0 7 710 256 238 32 0 chr1 16429498 16429561 -180765871 + L1ME3 LINE L1 6077 6141 -21 7 710 598 224 61 55 chr1 16429744 16429909 -180765523 + ORR1B2 LTR MaLR 1 166 -201 7 710 558 93 23 0 chr1 16429879 16429965 -180765467 + ORR1B2 LTR MaLR 278 365 -2 7 710 22 0 0 0 chr1 16430821 16430843 -180764589 + AT_rich Low_complexity Low_complexity 1 22 0 7 710 540 311 36 0 chr1 16431855 16432022 -180763410 + ID_B1 SINE B4 23 195 -29 7 710 286 248 58 90 chr1 16432064 16432219 -180763213 + L1MC4 LINE L1 6701 6850 -1192 7 710 274 176 0 0 chr1 16432230 16432281 -180763151 + L1MC4 LINE L1 7027 7077 -884 7 710 21 0 0 0 chr1 16432867 16432888 -180762544 + AT_rich Low_complexity Low_complexity 1 21 0 7 710 361 170 66 0 chr1 16432980 16433050 -180762382 + B1F SINE Alu 5 79 -41 7 710 29 28 0 0 chr1 16433287 16433323 -180762109 + AT_rich Low_complexity Low_complexity 1 36 0 7 710 204 158 0 0 chr1 16433500 16433538 -180761894 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7 710 249 57 0 0 chr1 16434183 16434218 -180761214 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 710 205 196 20 0 chr1 16434218 16434269 -180761163 + (TGG)n Simple_repeat Simple_repeat 1 52 0 7 710 240 59 0 0 chr1 16434272 16434306 -180761126 + (TTG)n Simple_repeat Simple_repeat 1 34 0 7 710 449 335 12 12 chr1 16434959 16435119 -180760313 - RSINE1 SINE B4 -3 162 3 7 710 2014 69 100 10 chr1 16435320 16435611 -180759821 - L1Md_F2 LINE L1 0 6582 6266 7 710 3038 175 76 39 chr1 16435626 16436299 -180759133 - RMER1B Other Other -6 1060 363 7 710 805 276 87 20 chr1 16436323 16436682 -180758750 - RMER1B Other Other -652 690 162 7 710 216 0 0 0 chr1 16437087 16437111 -180758321 + (A)n Simple_repeat Simple_repeat 1 24 0 7 710 226 337 50 96 chr1 16437153 16437373 -180758059 + RLTR41 LTR ERV1 191 400 -46 7 710 342 259 21 40 chr1 16437845 16438045 -180757387 + L1VL1 LINE L1 78 387 -6035 7 710 350 265 22 15 chr1 16438093 16438227 -180757205 + L1Md_F LINE L1 675 809 -5807 7 710 25772 118 6 24 chr1 16438229 16442973 -180752459 + L1Md_F LINE L1 725 5368 -515 7 710 37675 25 2 7 chr1 16442973 16448572 -180746860 + L1_Mus1 LINE L1 361 5924 -643 7 710 3529 20 0 0 chr1 16448572 16448968 -180746464 - MTA_Mm LTR MaLR 0 396 1 7 710 7342 58 1 13 chr1 16448968 16449625 -180745807 + L1_Mus1 LINE L1 5925 6654 0 7 710 554 254 42 14 chr1 16449645 16449789 -180745643 + B1_Mur2 SINE Alu 1 148 -1 7 710 352 259 228 34 chr1 16450009 16450448 -180744984 + L1ME3A LINE L1 5396 5919 -254 7 710 4387 69 22 2 chr1 16451146 16451723 -180743709 + L1_Mus3 LINE L1 6046 6634 -4 7 710 22 35 0 0 chr1 16452600 16452629 -180742803 + AT_rich Low_complexity Low_complexity 1 29 0 7 710 1158 101 0 0 chr1 16452798 16453016 -180742416 + (TG)n Simple_repeat Simple_repeat 1 218 0 7 710 309 26 0 0 chr1 16453337 16453375 -180742057 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 710 925 230 144 33 chr1 16453887 16454143 -180741289 + ORR1D1 LTR MaLR 1 281 -93 7 710 1218 124 38 0 chr1 16454143 16454329 -180741103 - B2_Mm2 SINE B2 -2 193 1 7 710 925 230 144 33 chr1 16454329 16454405 -180741027 + ORR1D1 LTR MaLR 282 370 -4 7 710 235 291 56 44 chr1 16454435 16454525 -180740907 + PB1D7 SINE Alu 19 109 -11 7 710 530 261 56 48 chr1 16454545 16454774 -180740658 + B4A SINE B4 1 291 -1 7 710 769 257 70 64 chr1 16455110 16455297 -180740135 - B3A SINE B2 -5 188 1 7 710 257 296 84 34 chr1 16455315 16455553 -180739879 + L1MC4 LINE L1 7367 7616 -426 7 710 225 211 169 13 chr1 16455860 16455937 -180739495 + MLT1A0 LTR MaLR 273 361 -4 7 710 615 232 51 0 chr1 16456206 16456344 -180739088 + B1_Mus2 SINE Alu 3 147 0 7 710 832 248 9 40 chr1 16456405 16456628 -180738804 + B3 SINE B2 1 216 0 7 710 724 311 112 27 chr1 16457063 16457393 -180738039 + MLT1A0 LTR MaLR 3 360 -5 7 710 1637 161 72 41 chr1 16457491 16457783 -180737649 + ORR1D1 LTR MaLR 1 307 -67 7 710 1222 94 66 6 chr1 16457783 16457805 -180737627 - B2_Mm2 SINE B2 -2 193 163 7 710 620 117 19 0 chr1 16457805 16457908 -180737524 + (CATA)n Simple_repeat Simple_repeat 2 106 0 7 710 1222 94 66 6 chr1 16457908 16458067 -180737365 - B2_Mm2 SINE B2 -33 162 1 7 710 1637 161 72 41 chr1 16458067 16458137 -180737295 + ORR1D1 LTR MaLR 308 374 0 7 710 4164 207 111 24 chr1 16458137 16459150 -180736282 + ORR1D1-int LTR MaLR 2 1102 -268 7 710 268 270 0 31 chr1 16459209 16459274 -180736158 + B1_Mur1 SINE Alu 81 143 -6 7 710 314 275 23 53 chr1 16459637 16459785 -180735647 + L1M4b LINE L1 2164 2402 -4700 7 710 1090 69 7 0 chr1 16459923 16460068 -180735364 - B1_Mm SINE Alu 0 147 2 7 710 24562 132 15 11 chr1 16460108 16464968 -180730464 + L1Md_F LINE L1 409 5292 -591 7 710 413 171 12 0 chr1 16464989 16465071 -180730361 + L1VL1 LINE L1 184 266 -6156 7 710 15394 80 236 119 chr1 16465071 16469644 -180725788 + L1Md_F2 LINE L1 480 5586 -297 7 710 7270 85 1 6 chr1 16469645 16470631 -180724801 + L1Md_F2 LINE L1 5588 6568 -14 7 710 9487 159 19 51 chr1 16470703 16471931 -180723501 + L1_Mur3 LINE L1 2920 4146 -1734 7 710 1081 103 0 0 chr1 16471931 16472077 -180723355 + B1_Mus1 SINE Alu 2 147 -1 7 710 9487 159 19 51 chr1 16472077 16472999 -180722433 + L1_Mur3 LINE L1 4147 5003 -877 7 710 803 234 33 45 chr1 16472996 16473238 -180722194 + Lx6 LINE L1 7196 7434 -26 7 710 213 39 0 0 chr1 16474374 16474400 -180721032 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 7 710 765 142 0 0 chr1 16474400 16474527 -180720905 + (GGGA)n Simple_repeat Simple_repeat 3 129 0 7 710 344 308 138 18 chr1 16474720 16474945 -180720487 - L2 LINE L2 -1457 1962 1711 7 710 239 157 20 0 chr1 16475482 16475533 -180719899 + (TATG)n Simple_repeat Simple_repeat 1 52 0 7 710 450 0 0 0 chr1 16475533 16475583 -180719849 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 7 710 27 29 0 0 chr1 16476485 16476519 -180718913 + AT_rich Low_complexity Low_complexity 1 34 0 7 710 385 259 242 22 chr1 16476597 16476775 -180718657 - ID_B1 SINE B4 -6 218 2 7 710 290 182 0 0 chr1 16477003 16477061 -180718371 + PB1D10 SINE Alu 62 119 -1 7 710 648 0 0 0 chr1 16477299 16477371 -180718061 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 7 710 518 293 0 0 chr1 16477945 16478068 -180717364 + PB1 SINE Alu 5 127 0 7 710 382 296 130 0 chr1 16478680 16478788 -180716644 + PB1 SINE Alu 1 122 -5 7 710 225 163 0 39 chr1 16478789 16478840 -180716592 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 7 710 460 268 49 14 chr1 16479092 16479236 -180716196 - B1F SINE Alu 0 149 1 7 710 217 197 15 15 chr1 16479857 16479924 -180715508 + (TA)n Simple_repeat Simple_repeat 2 68 0 7 710 420 20 0 0 chr1 16480025 16480074 -180715358 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 710 23 0 0 0 chr1 16480351 16480374 -180715058 + AT_rich Low_complexity Low_complexity 1 23 0 7 710 39 38 0 0 chr1 16480694 16480747 -180714685 + AT_rich Low_complexity Low_complexity 1 53 0 7 710 296 326 20 10 chr1 16481098 16481197 -180714235 + ID_B1 SINE B4 77 176 -48 7 710 361 300 20 10 chr1 16481118 16481219 -180714213 + PB1D10 SINE Alu 16 117 0 7 710 1074 154 86 15 chr1 16481321 16481519 -180713913 + B3 SINE B2 5 216 0 7 710 1843 145 28 19 chr1 16481520 16481837 -180713595 - Lx4A LINE L1 0 7058 6739 7 710 321 254 39 8 chr1 16482521 16482648 -180712784 - L1MA6 LINE L1 -68 6232 6102 7 710 1307 201 146 6 chr1 16482700 16483021 -180712411 + ORR1D1 LTR MaLR 1 366 -8 7 710 503 289 130 26 chr1 16483784 16483941 -180711491 - L1MB5 LINE L1 -9 6165 5991 7 710 824 151 216 0 chr1 16483941 16484126 -180711306 + URR1B DNA MER1_type 1 225 0 7 710 503 289 130 26 chr1 16484126 16484391 -180711041 - L1MB5 LINE L1 -184 5990 5700 7 710 292 275 108 16 chr1 16484430 16484615 -180710817 - L1MB5 LINE L1 -549 5631 5430 7 710 655 81 91 0 chr1 16484679 16484778 -180710654 + BC1_Mm scRNA scRNA 1 108 -44 7 710 256 321 44 18 chr1 16484875 16484989 -180710443 - PB1 SINE Alu -8 119 3 7 710 382 307 108 6 chr1 16485091 16485442 -180709990 - L1MB5 LINE L1 -1310 4833 4433 7 710 516 252 18 0 chr1 16485536 16485647 -180709785 - RSINE1 SINE B4 -50 115 3 7 710 1083 58 0 0 chr1 16485658 16485797 -180709635 - L1_Mus1 LINE L1 0 6567 6429 7 710 242 248 95 32 chr1 16485818 16485976 -180709456 - L1MD LINE L1 -1794 4352 4185 7 710 626 144 19 0 chr1 16486082 16486186 -180709246 + ORR1C1 LTR MaLR 1 106 -272 7 710 210 310 0 0 chr1 16486347 16486405 -180709027 + CT-rich Low_complexity Low_complexity 1 58 0 7 710 531 0 0 0 chr1 16486692 16486751 -180708681 + (CTG)n Simple_repeat Simple_repeat 1 59 0 7 710 2337 26 0 0 chr1 16487134 16487404 -180708028 + L1_Mus1 LINE L1 6298 6567 0 7 710 380 272 101 59 chr1 16487438 16487657 -180707775 + RodERV21-int LTR ERV1 849 1076 -3915 7 710 2676 285 31 35 chr1 16487711 16488670 -180706762 + RodERV21-int LTR ERV1 1071 2025 -2966 7 710 194 128 26 0 chr1 16488670 16488709 -180706723 + (CCCCAG)n Simple_repeat Simple_repeat 1 40 0 7 710 2373 277 15 40 chr1 16488712 16489452 -180705980 + RodERV21-int LTR ERV1 1997 2717 -2274 7 710 261 150 0 48 chr1 16489532 16489595 -180705837 + MuLV-int LTR ERV1 4890 4949 -2657 7 710 3277 332 30 39 chr1 16489640 16491680 -180703752 + RodERV21-int LTR ERV1 2766 4788 -203 7 710 577 69 23 0 chr1 16492053 16492140 -180703292 + (TC)n Simple_repeat Simple_repeat 2 90 0 8 710 1418 169 31 119 chr1 16492195 16492532 -180702900 + ORR1C1 LTR MaLR 59 378 0 8 710 858 255 93 54 chr1 16492669 16492947 -180702485 - MTE2a LTR MaLR 0 379 91 8 710 1214 98 18 8 chr1 16493489 16493879 -180701553 + (CA)n Simple_repeat Simple_repeat 1 394 0 8 710 1070 112 0 5 chr1 16493890 16494097 -180701335 + (CA)n Simple_repeat Simple_repeat 1 206 0 8 710 2483 244 73 33 chr1 16494866 16495644 -180699788 - RMER1C Other Other -8 1334 538 8 710 400 176 77 19 chr1 16496015 16496119 -180699313 - RMER1C Other Other -1076 266 157 8 710 38 68 0 0 chr1 16496409 16496482 -180698950 + AT_rich Low_complexity Low_complexity 1 73 0 8 710 1227 28 7 0 chr1 16496583 16496728 -180698704 + B1_Mm SINE Alu 2 147 0 8 710 369 145 0 0 chr1 16496756 16496818 -180698614 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 8 710 219 36 0 0 chr1 16497673 16497701 -180697731 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 710 340 231 88 53 chr1 16498018 16498132 -180697300 - MER2 DNA MER2_type -111 234 117 8 710 1121 90 0 25 chr1 16498871 16499030 -180696402 + B2_Mm2 SINE B2 3 157 -38 8 710 297 0 0 0 chr1 16499030 16499063 -180696369 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 8 710 334 298 130 0 chr1 16499605 16499766 -180695666 + MER3 DNA MER1_type 15 196 -13 8 710 6905 46 32 0 chr1 16500087 16500929 -180694503 + L1_Mus2 LINE L1 5696 6564 -2 1 710 496 267 55 12 chr1 16500929 16501092 -180694340 + B3A SINE B2 27 196 -2 2 710 264 59 0 0 chr1 16501228 16501262 -180694170 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 3 710 261 0 0 0 chr1 16501283 16501312 -180694120 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 710 431 313 29 47 chr1 16501528 16501806 -180693626 + B4A SINE B4 4 276 -16 5 710 231 271 0 0 chr1 16501816 16501864 -180693568 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 710 606 189 53 8 chr1 16502389 16502522 -180692910 + B1_Mus1 SINE Alu 4 142 -6 7 710 839 190 0 6 chr1 16502522 16502693 -180692739 + GA-rich Low_complexity Low_complexity 10 179 0 8 710 251 270 95 0 chr1 16502740 16502814 -180692618 + MLT1F2 LTR MaLR 472 552 -8 9 710 1006 266 115 41 chr1 16502969 16503333 -180692099 + Lx8 LINE L1 6879 7269 -204 1 710 21 57 0 0 chr1 16503462 16503497 -180691935 + AT_rich Low_complexity Low_complexity 1 35 0 1 710 622 220 43 12 chr1 16503628 16503810 -180691622 + B3A SINE B2 4 195 0 1 710 879 179 11 32 chr1 16504112 16504297 -180691135 + B2_Mm2 SINE B2 1 181 -14 1 710 451 241 204 0 chr1 16504982 16505144 -180690288 + B3 SINE B2 12 206 -10 1 710 523 174 73 9 chr1 16505533 16505643 -180689789 + ID_B1 SINE B4 86 202 -22 1 710 2340 69 3 28 chr1 16505809 16506136 -180689296 - L1_Mus2 LINE L1 0 6566 6248 1 710 1077 140 0 0 chr1 16506370 16506548 -180688884 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 710 981 158 4 0 chr1 16506560 16506789 -180688643 + (CA)n Simple_repeat Simple_repeat 1 230 0 1 710 914 206 71 20 chr1 16506886 16507084 -180688348 + B3 SINE B2 1 208 -8 1 710 202 211 0 0 chr1 16507212 16507250 -180688182 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 710 499 220 0 0 chr1 16507362 16507462 -180687970 + RSINE1 SINE B4 30 129 -36 2 710 215 226 0 54 chr1 16507462 16507518 -180687914 - RSINE1 SINE B4 -110 55 3 2 710 369 257 110 42 chr1 16507612 16507803 -180687629 + L1MC4 LINE L1 7832 8035 -7 2 710 200 176 0 50 chr1 16508603 16508663 -180686769 + C-rich Low_complexity Low_complexity 4 60 0 2 710 202 260 26 58 chr1 16508974 16509129 -180686303 + C-rich Low_complexity Low_complexity 2 151 0 2 710 219 189 20 59 chr1 16508978 16509079 -180686353 + (CCCCG)n Simple_repeat Simple_repeat 3 99 0 2 710 402 188 21 48 chr1 16509306 16509451 -180685981 + C-rich Low_complexity Low_complexity 3 143 0 2 710 638 146 23 0 chr1 16509453 16509624 -180685808 + CT-rich Low_complexity Low_complexity 1 175 0 2 710 1191 72 0 0 chr1 16509624 16509804 -180685628 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 710 231 348 146 26 chr1 16511128 16511320 -180684112 + L2c LINE L2 3157 3383 -4 2 710 267 31 0 0 chr1 16511462 16511494 -180683938 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 710 575 316 66 55 chr1 16512053 16512324 -180683108 + B4A SINE B4 19 292 0 3 710 201 154 0 0 chr1 16512347 16512386 -180683046 + A-rich Low_complexity Low_complexity 1 39 0 3 710 183 156 0 0 chr1 16512466 16512498 -180682934 + T-rich Low_complexity Low_complexity 1 32 0 3 710 29278 99 5 8 chr1 16512503 16514740 -180680692 - L1_Mus2 LINE L1 0 6566 4327 3 88 3560 18 2 0 chr1 16514740 16515135 -180680297 - MTA_Mm LTR MaLR 0 396 1 3 711 29278 107 7 11 chr1 16515135 16517942 -180677490 - L1_Mus2 LINE L1 -1557 4326 1540 3 711 2085 135 0 0 chr1 16517947 16518265 -180677167 - L1_Mur2 LINE L1 -662 5215 4898 3 711 8627 68 228 0 chr1 16518269 16520344 -180675088 - L1Md_T LINE L1 0 6582 3906 3 711 10132 163 38 67 chr1 16520342 16521728 -180673704 - L1_Mur2 LINE L1 -2395 3482 2058 3 711 459 0 0 0 chr1 16521728 16521779 -180673653 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 711 10132 163 38 67 chr1 16521779 16522329 -180673103 - L1_Mur2 LINE L1 -3820 2057 1578 3 711 311 0 26 0 chr1 16522329 16522368 -180673064 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 711 198 0 0 0 chr1 16522370 16522392 -180673040 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 711 10132 163 38 67 chr1 16522392 16522420 -180673012 - L1_Mur2 LINE L1 -4300 1577 1577 4 711 1093 76 14 20 chr1 16522420 16522568 -180672864 - B1_Mus1 SINE Alu 0 148 2 4 711 10132 163 38 67 chr1 16522568 16522794 -180672638 - L1_Mur2 LINE L1 -4300 1577 1353 3 711 1185 87 5 56 chr1 16522794 16522989 -180672443 - L1Md_F2 LINE L1 0 6582 6398 4 711 10132 191 40 95 chr1 16522989 16523505 -180671927 - L1_Mur2 LINE L1 -4525 1352 871 3 711 2383 201 80 19 chr1 16523716 16524280 -180671152 + RMER13A LTR ERVK 14 611 -249 4 711 288 111 0 0 chr1 16525301 16525346 -180670086 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4 711 298 167 0 18 chr1 16525346 16525401 -180670031 + ORR1C1 LTR MaLR 322 375 -3 4 711 489 248 15 15 chr1 16525406 16525537 -180669895 - MTEb LTR MaLR -247 132 2 4 711 242 247 24 72 chr1 16526037 16526120 -180669312 - MLT1H LTR MaLR -340 209 131 4 711 388 261 11 20 chr1 16526230 16526343 -180669089 + B1F2 SINE Alu 2 109 -40 4 711 3127 133 109 50 chr1 16526338 16527041 -180668391 + RMER6A LTR ERVK 5 749 -7 5 711 232 65 65 0 chr1 16527493 16527539 -180667893 + (GTTTG)n Simple_repeat Simple_repeat 5 53 0 5 711 1206 61 0 0 chr1 16527539 16527687 -180667745 - B1_Mus1 SINE Alu 0 148 1 5 711 1663 161 135 15 chr1 16527941 16528190 -180667242 + ORR1D1 LTR MaLR 1 294 -80 5 711 378 0 0 0 chr1 16528190 16528232 -180667200 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 5 711 1663 161 135 15 chr1 16528232 16528316 -180667116 + ORR1D1 LTR MaLR 295 373 -1 5 711 1509 64 0 5 chr1 16528836 16529024 -180666408 + B2_Mm2 SINE B2 1 187 -8 5 711 230 119 0 0 chr1 16529025 16529067 -180666365 + MLT1A1 LTR MaLR 327 368 -40 5 711 537 299 7 0 chr1 16529076 16529213 -180666219 + ID_B1 SINE B4 8 145 -79 5 711 363 129 57 0 chr1 16529687 16529757 -180665675 + ID_B1 SINE B4 151 224 0 5 711 733 186 54 42 chr1 16530006 16530174 -180665258 + B2_Mm2 SINE B2 1 170 -25 5 711 730 214 29 0 chr1 16531142 16531282 -180664150 - B1_Mur1 SINE Alu -4 145 2 6 711 843 254 69 52 chr1 16532037 16532386 -180663046 + RMER10A LTR ERVL 5 359 -83 6 711 357 174 81 0 chr1 16532688 16532774 -180662658 + RMER10A LTR ERVL 350 442 0 6 711 501 68 0 0 chr1 16532774 16532848 -180662584 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 711 515 291 33 6 chr1 16533342 16533525 -180661907 - RMER15 LTR ERVL -51 524 337 6 711 1811 185 103 5 chr1 16533554 16533970 -180661462 - RLTR11A2 LTR ERVK 0 527 65 6 711 494 269 103 5 chr1 16533970 16534164 -180661268 + B3 SINE B2 1 213 -3 6 711 480 236 27 18 chr1 16534284 16534396 -180661036 - B1_Mm SINE Alu -34 113 1 6 711 414 209 110 0 chr1 16534506 16534597 -180660835 - PB1D9 SINE Alu -2 118 18 6 711 1075 162 121 0 chr1 16534875 16535073 -180660359 - URR1A DNA MER1_type 0 226 5 6 711 919 160 0 0 chr1 16535591 16535741 -180659691 + B1_Mur4 SINE Alu 1 150 0 6 711 25 51 0 0 chr1 16535845 16535884 -180659548 + AT_rich Low_complexity Low_complexity 1 39 0 7 711 662 195 16 109 chr1 16535954 16536138 -180659294 - B2_Mm2 SINE B2 0 195 29 7 711 624 287 97 43 chr1 16536141 16536449 -180658983 - MLT1A0 LTR MaLR -34 374 7 7 711 213 300 0 0 chr1 16536521 16536571 -180658861 + PB1D10 SINE Alu 44 93 -24 7 711 213 39 0 0 chr1 16536573 16536599 -180658833 + (CTA)n Simple_repeat Simple_repeat 3 28 0 7 711 270 0 0 0 chr1 16536599 16536629 -180658803 + (TAA)n Simple_repeat Simple_repeat 1 30 0 7 711 233 246 15 0 chr1 16536938 16537003 -180658429 - MTD LTR MaLR 0 419 354 7 711 1955 188 55 10 chr1 16537018 16537421 -180658011 - MTC LTR MaLR 0 421 1 7 711 301 320 29 20 chr1 16537456 16537558 -180657874 + MLT1I LTR MaLR 132 234 -177 7 711 246 62 0 0 chr1 16537558 16537590 -180657842 + (GGGGA)n Simple_repeat Simple_repeat 4 35 0 7 711 1928 107 54 0 chr1 16537826 16538124 -180657308 + ORR1A2 LTR MaLR 6 319 -8 8 711 409 299 19 153 chr1 16538589 16538728 -180656704 + L1M4 LINE L1 4394 4528 -1618 8 711 1139 95 0 0 chr1 16538728 16538876 -180656556 + B1_Mus1 SINE Alu 1 148 0 8 711 409 299 19 153 chr1 16538876 16539056 -180656376 + L1M4 LINE L1 4529 4670 -1476 8 711 1220 48 0 7 chr1 16539434 16539581 -180655851 + B1_Mm SINE Alu 2 147 0 8 711 753 148 0 0 chr1 16539597 16539725 -180655707 + (GAA)n Simple_repeat Simple_repeat 2 129 0 8 711 206 175 25 0 chr1 16539738 16539778 -180655654 + GA-rich Low_complexity Low_complexity 4 44 0 8 711 2099 128 69 3 chr1 16539784 16540144 -180655288 - ORR1B1 LTR MaLR -10 384 1 8 711 241 353 16 11 chr1 16540150 16540339 -180655093 + L1_Rod LINE L1 478 667 -6505 8 711 1223 252 100 96 chr1 16540369 16541058 -180654374 + Lx8 LINE L1 5124 5815 -32 8 711 321 145 0 0 chr1 16541075 16541137 -180654295 + (T)n Simple_repeat Simple_repeat 1 62 0 8 711 462 31 0 0 chr1 16541137 16541201 -180654231 - B1_Mur4 SINE Alu 0 150 87 9 711 558 262 16 0 chr1 16541285 16541407 -180654025 + Lx8 LINE L1 6191 6314 -1159 8 711 271 262 12 0 chr1 16541419 16541503 -180653929 + L1M4 LINE L1 4972 5056 -1090 8 711 545 220 56 0 chr1 16541562 16541695 -180653737 - B1_Mm SINE Alu -8 141 1 9 711 316 241 48 68 chr1 16541698 16541845 -180653587 + L1M4 LINE L1 5053 5196 -950 8 711 471 248 170 0 chr1 16541849 16542002 -180653430 + B3 SINE B2 9 187 -29 9 711 225 0 0 0 chr1 16542029 16542054 -180653378 + (T)n Simple_repeat Simple_repeat 1 25 0 9 711 346 209 30 14 chr1 16542060 16542157 -180653275 + L1M4 LINE L1 5196 5295 -848 8 711 475 301 34 40 chr1 16542351 16542500 -180652932 - RSINE1 SINE B4 -2 163 16 9 711 4467 41 3 12 chr1 16542545 16543045 -180652387 + LTRIS_Mus LTR ERV1 1 502 -85 9 711 7407 81 31 2 chr1 16543045 16544039 -180651393 - RLTR13D5 LTR ERVK 0 1023 1 9 711 4467 41 3 12 chr1 16544039 16544130 -180651302 + LTRIS_Mus LTR ERV1 503 587 0 9 711 922 227 49 0 chr1 16544132 16544335 -180651097 - B3 SINE B2 0 216 4 9 711 988 134 14 0 chr1 16544372 16544514 -180650918 + B1_Mur4 SINE Alu 1 144 -6 9 711 807 169 0 0 chr1 16544517 16544665 -180650767 + G-rich Low_complexity Low_complexity 4 151 0 9 711 342 235 0 0 chr1 16544742 16544810 -180650622 + RMER1B Other Other 31 98 -968 1 711 1301 62 67 6 chr1 16544995 16545173 -180650259 - B2_Mm2 SINE B2 -6 189 1 1 711 572 109 21 11 chr1 16545510 16545603 -180649829 + RLTR13D5 LTR ERVK 10 103 -920 1 711 386 206 14 0 chr1 16545599 16545672 -180649760 - B3A SINE B2 -123 75 2 1 711 417 254 172 111 chr1 16545674 16545829 -180649603 - L1M3 LINE L1 -2358 3782 3646 1 711 1322 176 136 41 chr1 16545829 16546167 -180649265 + ORR1D1 LTR MaLR 5 374 0 1 711 417 254 172 111 chr1 16546167 16546222 -180649210 - L1M3 LINE L1 -2495 3645 3598 1 711 2372 42 38 44 chr1 16546222 16546542 -180648890 + L1_Mus2 LINE L1 6248 6565 -1 1 711 417 254 169 112 chr1 16546542 16546737 -180648695 - L1M3 LINE L1 -2543 3603 3364 1 711 944 161 207 0 chr1 16546737 16546911 -180648521 - B3 SINE B2 -6 210 1 1 711 228 256 116 118 chr1 16546911 16546985 -180648447 - L1M3 LINE L1 -2748 3398 3309 1 711 3722 129 121 0 chr1 16547183 16547786 -180647646 + RLTR33 LTR ERVK 1 676 -2 1 711 419 247 91 36 chr1 16547996 16548248 -180647184 - L1M2 LINE L1 -3146 2997 2732 1 711 856 254 21 11 chr1 16548372 16548563 -180646869 - B3A SINE B2 -5 193 1 1 711 528 211 0 18 chr1 16548595 16548706 -180646726 - L1MC1 LINE L1 -198 6135 6027 1 711 879 282 5 28 chr1 16548802 16549017 -180646415 - B3 SINE B2 -5 211 2 1 711 273 352 66 0 chr1 16549052 16549174 -180646258 + MTEb LTR MaLR 250 379 0 1 711 302 219 16 0 chr1 16549174 16549238 -180646194 - L1MC1 LINE L1 -509 5835 5771 1 711 237 65 0 0 chr1 16549258 16549289 -180646143 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 711 441 234 56 9 chr1 16549301 16549409 -180646023 - RSINE1 SINE B4 -31 134 22 1 711 1835 130 42 57 chr1 16549444 16549778 -180645654 + ORR1A4 LTR MaLR 1 329 0 1 711 695 308 61 52 chr1 16549814 16550143 -180645289 - L1MC1 LINE L1 -605 5728 5397 1 711 929 108 49 21 chr1 16550248 16550390 -180645042 + B1_Mur4 SINE Alu 5 150 0 1 711 317 313 30 0 chr1 16550558 16550657 -180644775 + PB1D10 SINE Alu 3 104 -13 1 711 768 217 69 26 chr1 16551007 16551196 -180644236 - B3 SINE B2 -19 197 1 1 711 594 214 27 33 chr1 16551808 16551958 -180643474 + B1_Mur3 SINE Alu 1 149 0 1 711 246 258 65 0 chr1 16552010 16552072 -180643360 + PB1 SINE Alu 57 122 -5 1 711 759 220 99 22 chr1 16552168 16552391 -180643041 - B4 SINE B4 -13 279 40 1 711 826 143 50 33 chr1 16552555 16552736 -180642696 + URR1B DNA MER1_type 40 223 -2 1 711 853 163 87 60 chr1 16553543 16553726 -180641706 + B2_Mm2 SINE B2 2 189 -6 1 711 541 236 110 7 chr1 16553950 16554095 -180641337 + B3A SINE B2 1 160 -38 1 711 270 0 0 0 chr1 16554103 16554133 -180641299 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 711 766 186 26 46 chr1 16555330 16555482 -180639950 - B1_Mur2 SINE Alu 0 149 1 1 711 744 163 103 7 chr1 16557037 16557173 -180638259 + B1_Mur4 SINE Alu 1 149 -1 1 711 180 143 0 0 chr1 16557736 16557778 -180637654 + (A)n Simple_repeat Simple_repeat 1 42 0 1 711 1207 47 0 0 chr1 16557874 16558022 -180637410 + B1_Mus1 SINE Alu 1 148 0 1 711 207 0 0 0 chr1 16558022 16558045 -180637387 + (A)n Simple_repeat Simple_repeat 1 23 0 1 711 336 48 0 0 chr1 16558194 16558236 -180637196 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 711 186 43 0 0 chr1 16560039 16560062 -180635370 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 711 23 0 0 0 chr1 16561077 16561100 -180634332 + AT_rich Low_complexity Low_complexity 1 23 0 1 711 1123 130 6 40 chr1 16562216 16562392 -180633040 + B2_Mm1t SINE B2 2 171 -22 1 711 345 128 163 58 chr1 16562428 16562545 -180632887 + B2_Mm2 SINE B2 47 191 -2 1 711 423 278 127 8 chr1 16562738 16562872 -180632560 + B3A SINE B2 2 151 -47 1 711 234 0 0 0 chr1 16562874 16562900 -180632532 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 711 480 243 219 6 chr1 16564513 16564691 -180630741 - ID_B1 SINE B4 -7 217 2 1 711 1156 88 0 0 chr1 16565113 16565260 -180630172 - B1_Mus2 SINE Alu 0 147 1 1 711 696 263 82 62 chr1 16565305 16565548 -180629884 + Lx8 LINE L1 7072 7319 -154 1 711 491 45 15 0 chr1 16565561 16565627 -180629805 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 711 235 170 99 99 chr1 16565635 16565746 -180629686 + Lx8 LINE L1 7357 7467 -6 1 711 296 156 0 45 chr1 16566530 16566597 -180628835 + G-rich Low_complexity Low_complexity 5 68 0 1 711 1842 158 93 23 chr1 16566812 16567197 -180628235 + MTD LTR MaLR 1 411 -8 1 711 403 233 73 65 chr1 16567330 16567454 -180627978 + B1F2 SINE Alu 1 125 -24 1 711 305 312 182 28 chr1 16568099 16568280 -180627152 + Lx8 LINE L1 7067 7275 -198 1 711 345 300 12 0 chr1 16568449 16568529 -180626903 - ID_B1 SINE B4 -15 209 129 1 711 1403 104 5 0 chr1 16568874 16569066 -180626366 - B2_Mm1t SINE B2 0 193 1 1 711 212 337 34 0 chr1 16569145 16569234 -180626198 + BC1_Mm scRNA scRNA 7 98 -54 1 711 1547 185 69 39 chr1 16569453 16569608 -180625824 + ORR1C1 LTR MaLR 2 161 -217 1 711 441 0 0 0 chr1 16569608 16569657 -180625775 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 711 1547 185 69 39 chr1 16569657 16569861 -180625571 + ORR1C1 LTR MaLR 162 371 -7 1 711 5101 202 84 49 chr1 16569860 16571156 -180624276 + ORR1C1-int LTR MaLR 27 1367 -3 1 711 1264 168 223 3 chr1 16571159 16571469 -180623963 + ORR1C1 LTR MaLR 1 378 0 1 711 349 271 110 83 chr1 16571622 16571767 -180623665 + B1F2 SINE Alu 1 149 0 1 711 1101 68 143 0 chr1 16573051 16573212 -180622220 + B2_Mm2 SINE B2 1 184 -11 1 711 216 0 0 0 chr1 16573218 16573242 -180622190 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 711 198 209 0 0 chr1 16573771 16573814 -180621618 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 711 1114 166 52 0 chr1 16573944 16574137 -180621295 + B3 SINE B2 4 206 -10 1 711 1408 58 16 16 chr1 16574227 16574418 -180621014 - B2_Mm2 SINE B2 -3 192 2 1 711 22 0 0 0 chr1 16574538 16574560 -180620872 + AT_rich Low_complexity Low_complexity 1 22 0 1 711 590 250 8 0 chr1 16575827 16575955 -180619477 + B1_Mur1 SINE Alu 20 148 -1 1 711 212 115 94 19 chr1 16575958 16576011 -180619421 + A-rich Low_complexity Low_complexity 4 60 0 1 711 329 314 23 55 chr1 16576603 16576731 -180618701 + PB1 SINE Alu 1 124 -3 1 711 232 267 261 22 chr1 16577992 16578084 -180617348 + PB1D10 SINE Alu 2 115 -2 1 711 507 254 15 15 chr1 16579505 16579641 -180615791 + ID_B1 SINE B4 79 214 -10 1 711 423 0 0 0 chr1 16579949 16579996 -180615436 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 711 930 233 14 19 chr1 16580290 16580504 -180614928 - B3 SINE B2 0 216 4 1 711 4327 56 2 5 chr1 16580622 16581176 -180614256 - L1Md_F2 LINE L1 -1 6581 6030 1 711 391 279 211 22 chr1 16582197 16582544 -180612888 - L1_Mur3 LINE L1 -765 5532 5088 1 711 469 353 43 0 chr1 16583762 16583949 -180611483 - B4A SINE B4 -95 197 3 1 711 352 215 144 36 chr1 16583952 16584063 -180611369 - PB1 SINE Alu 0 127 5 1 711 181 381 75 9 chr1 16585105 16585211 -180610221 + MIRc SINE MIR 38 150 -118 1 711 812 141 0 8 chr1 16585827 16585956 -180609476 + B1_Mur3 SINE Alu 5 132 -17 1 711 2920 51 56 8 chr1 16586320 16586698 -180608734 - MTA_Mm LTR MaLR 0 396 1 1 711 659 180 202 6 chr1 16587363 16587531 -180607901 + B3 SINE B2 1 201 -15 1 711 252 0 0 0 chr1 16588518 16588546 -180606886 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 711 183 42 0 0 chr1 16589675 16589699 -180605733 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 711 229 262 0 15 chr1 16589781 16589847 -180605585 + ID4_ SINE ID 7 71 -12 1 711 888 173 207 0 chr1 16589895 16590074 -180605358 + B3 SINE B2 1 216 0 1 711 21 36 0 0 chr1 16590385 16590413 -180605019 + AT_rich Low_complexity Low_complexity 1 28 0 1 711 2844 25 0 21 chr1 16590435 16590769 -180604663 + IAPLTR2b LTR ERVK 1 327 0 1 711 302 350 48 0 chr1 16591351 16591454 -180603978 - PB1 SINE Alu -18 109 2 1 711 246 269 0 71 chr1 16591771 16591827 -180603605 + B1F1 SINE Alu 1 52 -97 1 711 204 40 0 0 chr1 16591854 16591879 -180603553 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1 711 1424 73 0 10 chr1 16591952 16592146 -180603286 + B2_Mm2 SINE B2 2 193 -2 1 711 351 0 0 0 chr1 16592685 16592724 -180602708 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 711 1289 87 0 0 chr1 16592727 16592899 -180602533 - B2_Mm2 SINE B2 -22 173 2 1 711 741 136 0 0 chr1 16592999 16593109 -180602323 - B3 SINE B2 -106 110 1 1 711 2977 207 91 107 chr1 16593782 16594768 -180600664 + RMER1B Other Other 74 1044 -22 1 711 227 247 34 45 chr1 16594768 16594857 -180600575 - Charlie1b DNA MER1_type -229 294 207 1 711 189 0 0 0 chr1 16594969 16594990 -180600442 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 711 1072 235 228 8 chr1 16595239 16595633 -180599799 + Lx8 LINE L1 6827 7307 -166 1 711 274 301 168 37 chr1 16595724 16595831 -180599601 + ID_B1 SINE B4 84 204 -20 1 711 569 309 40 0 chr1 16595849 16596024 -180599408 + B3A SINE B2 5 186 -12 1 711 843 108 83 15 chr1 16596066 16596198 -180599234 + B1_Mur4 SINE Alu 5 145 -5 1 711 1179 169 14 5 chr1 16596686 16596900 -180598532 + B3 SINE B2 1 216 0 1 711 288 283 250 0 chr1 16596916 16597036 -180598396 + MER5B DNA MER1_type 29 178 0 1 711 420 238 143 40 chr1 16597208 16597383 -180598049 + MER82 DNA MER2_type 1 193 -460 1 711 258 329 13 0 chr1 16597383 16597459 -180597973 + ID4 SINE ID 2 78 -5 1 711 798 278 66 8 chr1 16597468 16597711 -180597721 + MER82 DNA MER2_type 188 444 -209 1 711 343 233 33 11 chr1 16598365 16598456 -180596976 + B1_Mur2 SINE Alu 1 93 -56 1 711 235 267 12 192 chr1 16598379 16598546 -180596886 + MT2B LTR ERVL 181 317 -284 1 711 452 236 100 23 chr1 16598478 16598608 -180596824 + B3A SINE B2 18 157 -41 2 711 230 134 24 193 chr1 16598623 16598706 -180596726 - MT2C_Mm LTR ERVL -247 228 160 2 711 466 195 23 0 chr1 16598658 16598745 -180596687 - B1_Mur4 SINE Alu -61 89 1 2 711 588 224 121 0 chr1 16598777 16598893 -180596539 + B3 SINE B2 1 130 -86 2 711 21 0 0 0 chr1 16598928 16598949 -180596483 + AT_rich Low_complexity Low_complexity 1 21 0 2 711 261 0 0 0 chr1 16598950 16598979 -180596453 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 711 496 200 0 50 chr1 16598979 16599079 -180596353 + B1_Mur1 SINE Alu 53 147 -2 2 711 578 218 51 11 chr1 16599093 16599269 -180596163 + L1MB7 LINE L1 5273 5455 -723 2 711 358 198 161 0 chr1 16599511 16599592 -180595840 + B1F SINE Alu 41 134 -15 2 711 226 275 181 29 chr1 16599625 16599730 -180595702 + MER2 DNA MER2_type 64 184 -161 2 711 1276 73 62 0 chr1 16599743 16599920 -180595512 + B2_Mm1t SINE B2 1 188 -5 2 711 444 220 115 86 chr1 16599920 16600059 -180595373 + B4 SINE B4 79 221 -71 2 711 971 62 54 0 chr1 16599934 16600064 -180595368 + B1_Mus2 SINE Alu 11 147 0 2 711 215 219 0 0 chr1 16600064 16600105 -180595327 + GA-rich Low_complexity Low_complexity 2 42 0 2 711 1231 34 0 0 chr1 16600201 16600347 -180595085 + B1_Mus2 SINE Alu 2 147 0 2 711 180 0 0 0 chr1 16600347 16600367 -180595065 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 711 278 216 156 64 chr1 16600478 16600587 -180594845 + MT2B LTR ERVL 160 278 -323 2 711 695 126 0 0 chr1 16600506 16600609 -180594823 + B1_Mur3 SINE Alu 42 144 -5 2 711 442 309 98 67 chr1 16600666 16600888 -180594544 + MER21B LTR ERV1 86 314 -549 2 711 598 258 91 76 chr1 16600888 16601098 -180594334 + ID_B1 SINE B4 1 213 -11 2 711 640 219 66 0 chr1 16601253 16601390 -180594042 + B1_Mur2 SINE Alu 2 147 -2 2 711 214 333 20 0 chr1 16601414 16601465 -180593967 + AluF_3 SINE Alu 141 192 -119 2 711 426 286 153 60 chr1 16601490 16601739 -180593693 + MER21B LTR ERV1 468 739 -124 2 711 339 288 81 29 chr1 16601844 16601980 -180593452 + L1MB7 LINE L1 5625 5767 -411 2 711 267 197 50 50 chr1 16602133 16602213 -180593219 + L1MB7 LINE L1 5976 6055 -129 2 711 306 0 0 0 chr1 16602320 16602354 -180593078 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 711 284 318 35 0 chr1 16602771 16602856 -180592576 - MIRb SINE MIR -169 99 12 2 711 1031 142 130 15 chr1 16603092 16603292 -180592140 - URR1A DNA MER1_type 0 226 4 2 711 1386 75 21 0 chr1 16603583 16603771 -180591661 + B2_Mm1t SINE B2 2 193 0 2 711 262 361 71 36 chr1 16603840 16603952 -180591480 + PB1D10 SINE Alu 1 116 -1 2 711 427 161 191 11 chr1 16604479 16604573 -180590859 - B1_Mur2 SINE Alu -33 116 6 2 711 323 211 14 27 chr1 16604636 16604709 -180590723 - ID4 SINE ID -10 73 2 2 711 195 42 0 0 chr1 16605380 16605404 -180590028 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 711 243 0 0 0 chr1 16605586 16605613 -180589819 + (A)n Simple_repeat Simple_repeat 1 27 0 2 711 824 169 22 0 chr1 16605614 16605750 -180589682 - B1_Mur2 SINE Alu -10 139 1 2 711 685 174 274 6 chr1 16606190 16606358 -180589074 + B3 SINE B2 2 214 -2 2 711 294 311 9 0 chr1 16606699 16606805 -180588627 + PB1D10 SINE Alu 1 107 -10 2 711 403 183 0 106 chr1 16606820 16606924 -180588508 + ID_B1 SINE B4 75 167 -57 2 711 584 199 71 64 chr1 16606832 16606972 -180588460 + B1_Mur4 SINE Alu 1 141 -9 2 711 371 273 72 57 chr1 16607291 16607485 -180587947 + B3A SINE B2 2 198 0 2 711 192 97 0 0 chr1 16609488 16609519 -180585913 + (CGGGG)n Simple_repeat Simple_repeat 5 35 0 2 711 607 109 43 0 chr1 16611663 16611755 -180583677 + B1_Mur4 SINE Alu 42 137 -13 2 711 227 54 0 26 chr1 16611756 16611794 -180583638 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 711 4479 14 2 0 chr1 16612018 16612510 -180582922 - MT2_Mm LTR ERVL 0 493 1 2 711 321 0 0 0 chr1 16612510 16612548 -180582884 - MERVL-int LTR ERVL 0 5485 5448 2 711 362 167 46 35 chr1 16612548 16612635 -180582797 - ORR1A3-int LTR MaLR -1323 640 553 2 711 18019 24 1 0 chr1 16612635 16614647 -180580785 - MERVL-int LTR ERVL -125 5360 3348 2 711 6529 11 32 0 chr1 16614647 16615670 -180579762 - MERVL-int LTR ERVL -4429 1056 1 2 711 4479 14 2 0 chr1 16615670 16616162 -180579270 - MT2_Mm LTR ERVL 0 493 1 2 711 223 26 77 0 chr1 16616669 16616708 -180578724 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2 711 500 192 182 8 chr1 16616708 16616834 -180578598 - B1_Mus1 SINE Alu 0 148 1 2 711 248 314 0 28 chr1 16616887 16616959 -180578473 + ID2 SINE ID 14 83 0 2 711 292 308 100 65 chr1 16617075 16617245 -180578187 - Tigger5 DNA MER2_type -2230 176 1 2 711 2229 209 87 72 chr1 16617539 16617631 -180577801 + Lx9 LINE L1 6943 7030 -614 2 711 1088 51 72 0 chr1 16617631 16617769 -180577663 + B1_Mus1 SINE Alu 1 148 0 2 711 2229 209 87 72 chr1 16617769 16618342 -180577090 + Lx9 LINE L1 7031 7618 -26 2 711 583 296 59 7 chr1 16618387 16618540 -180576892 + RSINE1 SINE B4 3 163 -2 2 711 287 296 57 65 chr1 16618584 16618601 -180576831 + B4 SINE B4 77 92 -200 2 711 636 205 0 0 chr1 16618601 16618718 -180576714 + B1_Mus1 SINE Alu 3 119 -29 2 711 774 60 0 0 chr1 16618722 16618822 -180576610 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 711 3044 15 9 11 chr1 16619309 16619656 -180575776 - ORR1A0 LTR MaLR 0 346 1 2 711 8835 80 42 6 chr1 16619656 16621245 -180574187 - ORR1A0-int LTR MaLR 0 1963 1 2 711 3071 18 9 0 chr1 16621245 16621588 -180573844 - ORR1A0 LTR MaLR 0 346 1 2 711 321 267 0 0 chr1 16621817 16621892 -180573540 - B4A SINE B4 -208 84 10 2 711 22 35 0 0 chr1 16621920 16621949 -180573483 + AT_rich Low_complexity Low_complexity 1 29 0 2 711 702 230 71 10 chr1 16621951 16622149 -180573283 - B3 SINE B2 -5 211 2 2 711 233 244 73 0 chr1 16622398 16622480 -180572952 + PB1D10 SINE Alu 14 101 -16 2 711 250 236 0 18 chr1 16622486 16622542 -180572890 + GA-rich Low_complexity Low_complexity 2 56 0 2 711 367 316 44 0 chr1 16622679 16622815 -180572617 - ID_B1 SINE B4 -1 223 82 2 711 512 237 7 41 chr1 16622983 16623128 -180572304 + B1_Mur3 SINE Alu 10 149 0 2 711 624 268 99 49 chr1 16623242 16623485 -180571947 + MER2 DNA MER2_type 91 345 0 2 711 440 308 37 21 chr1 16623702 16623944 -180571488 + L1MC5 LINE L1 7384 7629 -332 2 711 358 176 92 64 chr1 16624156 16624265 -180571167 - MTEb LTR MaLR -5 374 263 2 711 399 206 11 0 chr1 16624662 16624754 -180570678 + B1_Mur4 SINE Alu 50 142 -8 2 711 576 130 0 0 chr1 16624754 16624846 -180570586 + (GGGA)n Simple_repeat Simple_repeat 1 92 0 2 711 204 206 0 0 chr1 16624846 16624880 -180570552 + polypurine Low_complexity Low_complexity 4 37 0 2 711 968 263 94 17 chr1 16624880 16625283 -180570149 + Lx8 LINE L1 3962 4395 -1485 2 711 712 162 22 22 chr1 16625298 16625437 -180569995 - B1_Mus1 SINE Alu 0 148 10 2 711 194 33 67 0 chr1 16625453 16625483 -180569949 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 711 348 263 106 9 chr1 16625484 16625673 -180569759 + L1M2 LINE L1 4487 4704 -1439 2 711 2152 172 167 10 chr1 16625671 16626163 -180569269 + RMER1B Other Other 498 1066 0 2 711 483 225 73 68 chr1 16626160 16626351 -180569081 + L1M2 LINE L1 4679 4870 -1273 2 711 405 200 23 12 chr1 16626351 16626437 -180568995 + B3 SINE B2 120 206 -10 2 711 1752 256 58 16 chr1 16626470 16627042 -180568390 + Lx8 LINE L1 5277 5908 -1565 2 711 888 281 146 24 chr1 16627225 16627560 -180567872 + Lx8 LINE L1 6130 6505 -968 2 711 582 312 8 46 chr1 16627566 16627743 -180567689 + B3A SINE B2 3 171 -27 2 711 216 0 0 0 chr1 16627770 16627794 -180567638 + (A)n Simple_repeat Simple_repeat 1 24 0 2 711 426 183 116 8 chr1 16627959 16628080 -180567352 - L1M4 LINE L1 -700 5474 5341 2 711 961 142 17 23 chr1 16628116 16628289 -180567143 + B2_Mm2 SINE B2 1 172 -23 2 711 444 82 0 0 chr1 16628291 16628352 -180567080 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 2 711 544 185 114 8 chr1 16628401 16628532 -180566900 + RMER15 LTR ERVL 431 575 0 2 711 217 255 0 18 chr1 16628686 16628742 -180566690 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 2 711 189 0 0 0 chr1 16628745 16628766 -180566666 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 711 351 0 0 0 chr1 16628766 16628805 -180566627 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 711 397 285 85 13 chr1 16628828 16628981 -180566451 + B3 SINE B2 26 189 -27 2 711 405 0 0 0 chr1 16629006 16629051 -180566381 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 2 711 403 328 58 8 chr1 16629060 16629180 -180566252 + RSINE1 SINE B4 7 132 -33 2 711 316 238 297 0 chr1 16629354 16629455 -180565977 + B3 SINE B2 54 184 -32 2 711 300 273 161 49 chr1 16629463 16629625 -180565807 + B3A SINE B2 1 180 -18 2 711 284 197 24 73 chr1 16629978 16630060 -180565372 + ID4 SINE ID 2 79 -4 2 711 778 204 110 6 chr1 16630371 16630553 -180564879 + B3 SINE B2 1 201 -15 2 711 428 258 192 6 chr1 16630817 16630973 -180564459 - B3A SINE B2 -12 186 2 2 711 1035 83 45 0 chr1 16631241 16631398 -180564034 + B2_Mm2 SINE B2 1 164 -31 2 711 393 22 0 0 chr1 16631453 16631499 -180563933 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 711 24 0 0 0 chr1 16633348 16633372 -180562060 + AT_rich Low_complexity Low_complexity 1 24 0 2 711 326 286 126 34 chr1 16633584 16633790 -180561642 + MLT1B LTR MaLR 1 225 -165 2 711 264 324 54 0 chr1 16633971 16634082 -180561350 + PB1D10 SINE Alu 1 117 0 2 711 411 175 0 36 chr1 16634229 16634312 -180561120 - B1_Mur4 SINE Alu -6 144 65 2 711 180 0 0 0 chr1 16634335 16634355 -180561077 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 2 711 366 228 51 0 chr1 16634417 16634496 -180560936 - PB1D9 SINE Alu -26 94 12 2 711 457 304 97 5 chr1 16634649 16634834 -180560598 + B3 SINE B2 9 210 -6 2 711 240 276 134 31 chr1 16634998 16635125 -180560307 + L1MB5 LINE L1 5652 5791 -383 2 711 235 291 16 98 chr1 16635199 16635321 -180560111 + L1MB5 LINE L1 6019 6130 -44 2 711 234 253 175 21 chr1 16635541 16635638 -180559794 - PB1 SINE Alu -7 120 9 2 711 387 0 0 0 chr1 16635643 16635686 -180559746 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 711 1662 47 0 0 chr1 16636135 16636327 -180559105 + B2_Mm1t SINE B2 1 192 -1 3 711 852 108 31 0 chr1 16636856 16636985 -180558447 + B1_Mus1 SINE Alu 11 143 -5 3 711 235 216 27 13 chr1 16636987 16637062 -180558370 + GA-rich Low_complexity Low_complexity 4 79 0 3 711 695 217 0 0 chr1 16637633 16637762 -180557670 - B1_Mus2 SINE Alu -10 137 9 3 711 321 266 136 8 chr1 16639255 16639380 -180556052 + B3 SINE B2 8 148 -68 3 711 678 231 89 39 chr1 16639451 16639654 -180555778 - B3 SINE B2 -3 213 1 3 711 590 178 42 0 chr1 16639959 16640077 -180555355 - B1_Mus2 SINE Alu -6 141 19 3 711 1101 62 0 27 chr1 16640087 16640235 -180555197 + B1_Mus1 SINE Alu 5 148 0 3 711 886 96 0 7 chr1 16640316 16640452 -180554980 - B1_Mur4 SINE Alu -10 140 6 3 711 766 164 0 8 chr1 16640496 16640625 -180554807 - B3 SINE B2 -88 128 1 3 711 358 181 62 143 chr1 16640636 16640797 -180554635 - B1_Mur3 SINE Alu 0 149 2 3 711 229 135 19 19 chr1 16641240 16641293 -180554139 + (ACATG)n Simple_repeat Simple_repeat 1 53 0 3 711 1115 82 7 0 chr1 16641437 16641584 -180553848 - B1_Mus1 SINE Alu 0 148 1 3 711 291 241 114 0 chr1 16641613 16641692 -180553740 + B1F1 SINE Alu 1 88 -61 3 711 880 92 8 0 chr1 16641942 16642073 -180553359 + B1_Mur4 SINE Alu 6 137 -13 3 711 309 288 12 0 chr1 16642669 16642749 -180552683 + B3 SINE B2 27 107 -109 3 711 876 76 61 0 chr1 16642786 16642917 -180552515 + B2_Mm1t SINE B2 41 179 -14 3 711 264 54 54 0 chr1 16643004 16643060 -180552372 + B2_Mm2 SINE B2 137 195 0 3 711 547 262 99 16 chr1 16643068 16643250 -180552182 + B3A SINE B2 2 198 0 3 711 197 294 39 0 chr1 16643262 16643313 -180552119 + MIR SINE MIR 187 239 -23 3 711 265 315 43 0 chr1 16643523 16643615 -180551817 - Cheshire DNA MER1_type -2149 271 176 3 711 649 214 100 0 chr1 16643717 16643857 -180551575 + B3 SINE B2 63 216 0 3 711 242 241 174 35 chr1 16643963 16644049 -180551383 - B1_Mur2 SINE Alu -33 116 19 3 711 223 97 50 0 chr1 16644350 16644390 -180551042 - B1_Mur4 SINE Alu -55 92 53 3 711 298 255 53 87 chr1 16644694 16644706 -180550726 + MT2B LTR ERVL 157 223 -378 3 711 573 189 18 0 chr1 16644706 16644817 -180550615 + B1_Mm SINE Alu 3 115 -32 3 711 371 323 8 0 chr1 16644817 16644833 -180550599 + ID_B1 SINE B4 84 211 -13 3 711 298 255 53 87 chr1 16644833 16644844 -180550588 + MT2B LTR ERVL 224 301 -300 3 711 236 383 19 0 chr1 16644848 16644955 -180550477 + L2a LINE L2 2987 3095 -331 3 711 363 212 246 9 chr1 16645502 16645616 -180549816 + B1_Mur1 SINE Alu 3 143 -6 3 712 216 250 67 67 chr1 16647937 16648027 -180547405 - B1F1 SINE Alu -52 97 8 3 712 202 116 45 23 chr1 16648041 16648085 -180547347 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 712 306 159 0 0 chr1 16648414 16648483 -180546949 + T-rich Low_complexity Low_complexity 1 69 0 3 712 1218 55 0 0 chr1 16648485 16648631 -180546801 - B1_Mus2 SINE Alu 0 147 2 3 712 931 158 50 75 chr1 16648635 16648834 -180546598 - B2_Mm2 SINE B2 -1 194 1 3 712 488 142 118 36 chr1 16648917 16649027 -180546405 - RMER10B LTR ERVL -7 391 273 3 712 1032 98 0 0 chr1 16649461 16649593 -180545839 - B1_Mus1 SINE Alu -15 133 2 3 712 844 128 74 0 chr1 16649645 16649794 -180545638 - MT2B2 LTR ERVL 0 584 425 3 712 823 71 87 0 chr1 16649794 16649920 -180545512 - MT2B2 LTR ERVL -447 137 1 3 712 210 37 0 0 chr1 16649922 16649949 -180545483 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 712 326 267 107 0 chr1 16650067 16650142 -180545290 - B3 SINE B2 -11 205 123 3 712 584 205 24 57 chr1 16650634 16650758 -180544674 - B3 SINE B2 -90 126 7 3 712 934 134 101 0 chr1 16651962 16652141 -180543291 - URR1B DNA MER1_type -3 222 26 3 712 29 0 0 0 chr1 16652305 16652334 -180543098 + AT_rich Low_complexity Low_complexity 1 29 0 3 712 236 286 0 41 chr1 16652487 16652560 -180542872 - ID4_ SINE ID -12 71 2 3 712 880 250 58 36 chr1 16653941 16654215 -180541217 - RMER5 LTR ERV1 0 534 255 3 712 1263 27 0 13 chr1 16654474 16654623 -180540809 - B1_Mus2 SINE Alu 0 147 1 3 712 895 48 0 31 chr1 16654745 16654873 -180540559 - B1_Mus1 SINE Alu 0 148 25 3 712 468 241 28 28 chr1 16655777 16655918 -180539514 - B1_Mur2 SINE Alu -2 147 7 3 712 760 109 8 23 chr1 16656119 16656250 -180539182 - B1_Mus2 SINE Alu 0 147 19 3 712 265 86 188 94 chr1 16656366 16656430 -180539002 - B1_Mur4 SINE Alu -18 132 63 3 712 301 224 8 101 chr1 16656648 16656777 -180538655 + PB1 SINE Alu 9 125 -2 3 712 370 247 26 0 chr1 16657022 16657099 -180538333 - PB1D9 SINE Alu -37 83 5 3 712 395 156 39 0 chr1 16657230 16657307 -180538125 - B1_Mus1 SINE Alu -61 87 8 3 712 546 267 41 20 chr1 16657316 16657360 -180538072 - B3 SINE B2 -3 213 170 3 712 201 74 0 0 chr1 16657360 16657387 -180538045 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 712 546 267 41 20 chr1 16657387 16657537 -180537895 - B3 SINE B2 -47 169 16 3 712 242 238 88 0 chr1 16657535 16657615 -180537817 - B4A SINE B4 -66 226 140 3 712 1230 209 106 27 chr1 16657891 16658259 -180537173 - Lx9 LINE L1 -1 7643 7247 3 712 221 122 41 0 chr1 16658264 16658313 -180537119 + T-rich Low_complexity Low_complexity 2 52 0 3 712 48 60 0 0 chr1 16658558 16658641 -180536791 + AT_rich Low_complexity Low_complexity 1 83 0 3 712 389 230 48 82 chr1 16658656 16658803 -180536629 + ORR1E LTR MaLR 56 197 -162 3 712 6351 55 27 4 chr1 16659034 16659824 -180535608 - RLTR13C2 LTR ERVK 0 808 1 3 712 424 200 296 0 chr1 16659863 16659978 -180535454 + B1_Mur2 SINE Alu 1 149 0 3 712 216 333 0 39 chr1 16660083 16660161 -180535271 + ID2 SINE ID 1 75 -8 3 712 564 252 121 13 chr1 16660838 16660995 -180534437 + B3 SINE B2 1 174 -42 3 712 944 126 7 14 chr1 16661038 16661183 -180534249 + B1_Mus1 SINE Alu 5 148 0 3 712 1210 142 16 0 chr1 16661187 16661377 -180534055 + B2_Mm2 SINE B2 2 194 -1 3 712 447 298 15 0 chr1 16661930 16662061 -180533371 + MTE2b LTR MaLR 57 189 -190 3 712 360 293 109 31 chr1 16662241 16662470 -180532962 - MLT1C LTR MaLR -165 302 56 3 712 198 103 0 0 chr1 16662936 16662965 -180532467 + (TTTCC)n Simple_repeat Simple_repeat 3 31 0 3 712 249 33 0 0 chr1 16663046 16663076 -180532356 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 712 289 263 66 93 chr1 16663079 16663230 -180532202 - B3A SINE B2 -12 186 40 3 712 236 308 106 49 chr1 16663265 16663388 -180532044 - ID_B1 SINE B4 -17 207 78 3 712 312 270 133 18 chr1 16663731 16663844 -180531588 - RSINE1 SINE B4 -25 140 15 3 712 190 53 24 73 chr1 16663945 16663986 -180531446 + T-rich Low_complexity Low_complexity 5 43 0 3 712 956 109 6 39 chr1 16663986 16664168 -180531264 + C-rich Low_complexity Low_complexity 3 178 0 3 712 224 211 0 0 chr1 16664168 16664206 -180531226 + polypyrimidine Low_complexity Low_complexity 3 40 0 3 712 488 86 0 0 chr1 16664208 16664278 -180531154 - B1_Mus2 SINE Alu -2 145 76 3 712 1388 161 40 90 chr1 16664285 16664708 -180530724 - RMER17C LTR ERVK -8 402 1 3 712 367 167 139 0 chr1 16664708 16664778 -180530654 - B1_Mus2 SINE Alu -67 80 1 3 712 225 0 0 0 chr1 16664890 16664915 -180530517 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 3 712 378 200 13 0 chr1 16665100 16665175 -180530257 - PB1D10 SINE Alu 0 117 42 3 712 218 259 0 0 chr1 16665272 16665326 -180530106 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 712 1012 280 85 25 chr1 16665379 16665742 -180529690 - MTD LTR MaLR -15 404 20 3 712 965 254 4 78 chr1 16665770 16665823 -180529609 - B4A SINE B4 -65 227 193 3 712 624 182 88 0 chr1 16665823 16665960 -180529472 - B1_Mur3 SINE Alu 0 149 1 3 712 965 254 4 78 chr1 16665960 16666149 -180529283 - B4A SINE B4 -100 192 3 3 712 256 337 20 31 chr1 16666162 16666260 -180529172 - PB1D7 SINE Alu -12 108 12 3 712 238 318 17 182 chr1 16666172 16666353 -180529079 - ID_B1 SINE B4 -48 176 26 3 712 219 324 0 0 chr1 16666386 16666457 -180528975 - PB1D10 SINE Alu 0 117 47 3 712 406 321 135 62 chr1 16666631 16666956 -180528476 - ORR1E LTR MaLR -9 350 2 3 712 449 328 133 0 chr1 16667625 16667820 -180527612 + ID_B1 SINE B4 2 222 -2 3 712 359 208 42 0 chr1 16667961 16668033 -180527399 - PB1D9 SINE Alu 0 120 46 3 712 955 124 38 38 chr1 16668076 16668260 -180527172 + B2_Mm2 SINE B2 5 188 -7 3 712 3733 57 2 0 chr1 16668542 16668996 -180526436 - L1_Mus1 LINE L1 0 6567 6113 3 712 384 224 54 45 chr1 16669108 16669220 -180526212 - PB1D10 SINE Alu 0 117 5 3 712 1299 257 107 28 chr1 16669248 16669641 -180525791 - Lx6 LINE L1 -30 7430 7007 3 712 1241 47 0 0 chr1 16670214 16670362 -180525070 - B1_Mus1 SINE Alu 0 148 1 3 712 2706 66 145 139 chr1 16670545 16671054 -180524378 - RLTR1B LTR ERV1 0 512 1 3 712 2252 118 10 71 chr1 16671132 16671542 -180523890 - ORR1B1 LTR MaLR -8 386 2 3 712 191 114 0 28 chr1 16671737 16671773 -180523659 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 3 712 465 204 11 0 chr1 16671778 16671866 -180523566 - ID_B1 SINE B4 -19 205 117 3 712 349 297 93 0 chr1 16671866 16671896 -180523536 - B1F2 SINE Alu -19 130 2 3 712 890 96 0 43 chr1 16671919 16672060 -180523372 - B1_Mur4 SINE Alu 0 150 16 3 712 198 0 0 0 chr1 16672146 16672168 -180523264 + (T)n Simple_repeat Simple_repeat 1 22 0 4 712 243 182 149 15 chr1 16672386 16672453 -180522979 + B1F SINE Alu 19 94 -55 4 712 216 0 0 0 chr1 16672470 16672494 -180522938 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 712 331 144 125 62 chr1 16672650 16672746 -180522686 - PB1D9 SINE Alu -9 111 10 4 712 407 280 141 29 chr1 16672743 16672949 -180522483 - B4A SINE B4 -63 229 1 4 712 593 278 87 67 chr1 16673022 16673230 -180522202 + B3 SINE B2 1 212 -4 4 712 205 88 29 0 chr1 16673316 16673350 -180522082 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 712 714 193 15 0 chr1 16673353 16673488 -180521944 - B1_Mur1 SINE Alu 0 149 13 4 712 680 229 29 0 chr1 16673577 16673717 -180521715 - B1_Mur3 SINE Alu -1 148 5 4 712 381 209 56 0 chr1 16673729 16673820 -180521612 - PB1D9 SINE Alu -20 100 6 4 712 294 227 0 120 chr1 16673976 16674051 -180521381 - ID_B1 SINE B4 -67 157 92 4 712 497 292 80 45 chr1 16674068 16674187 -180521245 - B3A SINE B2 -16 182 57 4 712 1471 142 162 72 chr1 16674187 16674550 -180520882 + RMER10B LTR ERVL 3 398 0 4 712 497 292 80 45 chr1 16674550 16674606 -180520826 - B3A SINE B2 -142 56 1 4 712 3053 194 119 7 chr1 16674644 16675335 -180520097 - Lx9 LINE L1 -4 7640 6873 4 712 2563 101 101 37 chr1 16675350 16675397 -180520035 + RLTR28 LTR ERVL 6 86 -438 4 712 341 40 92 0 chr1 16675397 16675473 -180519959 + (CAT)n Simple_repeat Simple_repeat 1 83 0 4 712 2563 101 101 37 chr1 16675473 16675910 -180519522 + RLTR28 LTR ERVL 87 521 -3 4 712 840 20 0 0 chr1 16675910 16676008 -180519424 + (TTC)n Simple_repeat Simple_repeat 2 99 0 4 712 1108 36 14 41 chr1 16676010 16676155 -180519277 - B1_Mm SINE Alu -6 141 1 4 712 216 200 67 0 chr1 16676202 16676247 -180519185 - B1F2 SINE Alu -101 48 1 4 712 785 94 17 17 chr1 16676275 16676394 -180519038 - PB1D9 SINE Alu 0 120 2 4 712 637 223 8 0 chr1 16676532 16676653 -180518779 + B1_Mur1 SINE Alu 27 148 -1 4 712 580 270 24 8 chr1 16676678 16676805 -180518627 + RSINE1 SINE B4 9 137 -28 4 712 24 32 0 0 chr1 16677306 16677337 -180518095 + AT_rich Low_complexity Low_complexity 1 31 0 4 712 219 69 0 0 chr1 16677754 16677783 -180517649 + (T)n Simple_repeat Simple_repeat 1 29 0 4 712 565 160 0 0 chr1 16678147 16678241 -180517191 - B1_Mur2 SINE Alu -6 143 50 4 712 256 258 0 43 chr1 16679126 16679195 -180516237 + MIRc SINE MIR 81 146 -122 4 712 709 203 60 0 chr1 16679305 16679438 -180515994 - B1_Mur2 SINE Alu -8 141 1 4 712 328 228 48 48 chr1 16679445 16679528 -180515904 - PB1D9 SINE Alu -2 118 36 4 712 542 232 32 8 chr1 16679535 16679661 -180515771 - B1F SINE Alu -2 147 19 4 712 423 0 0 0 chr1 16680136 16680183 -180515249 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 712 612 288 59 0 chr1 16680188 16680341 -180515091 - B3A SINE B2 -22 176 15 4 712 22 35 0 0 chr1 16680369 16680398 -180515034 + AT_rich Low_complexity Low_complexity 1 29 0 4 712 533 117 0 0 chr1 16680461 16680538 -180514894 - B2_Mm2 SINE B2 -118 77 1 4 712 3368 138 135 21 chr1 16680726 16681335 -180514097 + RLTR33 LTR ERVK 1 678 0 4 712 822 163 44 0 chr1 16681357 16681492 -180513940 - B1_Mur3 SINE Alu -6 143 3 4 712 269 320 170 44 chr1 16681925 16682131 -180513301 - MLT1E LTR MaLR 0 653 422 4 712 1247 74 55 28 chr1 16682237 16682418 -180513014 - B2_Mm2 SINE B2 -7 188 3 4 712 35 0 0 0 chr1 16682600 16682635 -180512797 + AT_rich Low_complexity Low_complexity 1 35 0 4 712 324 0 0 0 chr1 16682674 16682710 -180512722 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 712 771 254 6 0 chr1 16682714 16682887 -180512545 - B3A SINE B2 -24 174 1 4 712 704 166 27 20 chr1 16683197 16683345 -180512087 - B1_Mur2 SINE Alu 0 149 1 4 712 373 216 238 31 chr1 16683466 16683649 -180511783 - B3A SINE B2 0 216 1 4 712 274 361 22 22 chr1 16683691 16683827 -180511605 - B1_Mus1 SINE Alu -10 138 3 4 712 734 201 30 0 chr1 16683925 16684059 -180511373 + B1_Mur2 SINE Alu 1 138 -11 4 712 432 67 0 0 chr1 16684066 16684126 -180511306 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 712 539 209 36 48 chr1 16684135 16684301 -180511131 - RLTR43A LTR ERVK 0 364 201 4 712 2043 202 13 16 chr1 16684502 16684884 -180510548 - ETnERV2-int LTR ERVK -380 7026 6646 4 712 2872 198 46 38 chr1 16685013 16685885 -180509547 + L1Md_F LINE L1 264 1113 -5424 4 712 254 231 62 37 chr1 16686112 16686193 -180509239 + ID4_ SINE ID 1 83 0 4 712 3866 60 4 10 chr1 16686200 16686692 -180508740 - L1_Mus2 LINE L1 0 6566 6078 4 712 180 234 0 0 chr1 16686992 16687039 -180508393 + (CTG)n Simple_repeat Simple_repeat 2 48 0 4 712 263 316 25 50 chr1 16687046 16687206 -180508226 - LTR16B2 LTR ERVL -8 454 299 4 712 309 284 0 12 chr1 16687239 16687321 -180508111 + PB1 SINE Alu 45 125 -2 4 712 538 231 131 55 chr1 16687493 16687676 -180507756 + B3A SINE B2 2 198 0 4 712 939 199 48 19 chr1 16687682 16687892 -180507540 + B3 SINE B2 1 216 0 4 712 22 0 0 0 chr1 16687892 16687914 -180507518 + AT_rich Low_complexity Low_complexity 1 22 0 4 712 885 152 7 0 chr1 16687921 16688059 -180507373 + B1_Mur1 SINE Alu 1 139 -10 4 712 219 69 0 0 chr1 16688059 16688088 -180507344 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 4 712 244 282 70 0 chr1 16688910 16688981 -180506451 - LTR88a LTR Gypsy -462 354 279 4 712 1882 171 77 0 chr1 16689183 16689535 -180505897 - RLTR30 LTR ERV1 0 379 1 4 712 400 220 0 12 chr1 16689830 16689923 -180505509 + B1_Mur1 SINE Alu 49 136 -13 4 712 486 0 0 0 chr1 16689969 16690023 -180505409 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 712 254 227 56 22 chr1 16690206 16690296 -180505136 - ID_B1 SINE B4 -2 222 130 4 712 180 77 0 0 chr1 16690303 16690329 -180505103 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 712 545 213 0 0 chr1 16690329 16690437 -180504995 - PB1D9 SINE Alu -10 110 3 4 712 191 36 36 0 chr1 16690604 16690632 -180504800 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 712 1414 94 5 0 chr1 16691045 16691237 -180504195 - B2_Mm1a SINE B2 0 193 1 4 712 239 320 10 30 chr1 16691594 16691694 -180503738 - ID_B1 SINE B4 -6 218 121 4 712 634 239 45 0 chr1 16691711 16691845 -180503587 - B1_Mur2 SINE Alu -7 142 3 4 712 842 222 11 43 chr1 16691911 16692095 -180503337 - B3 SINE B2 -38 178 1 4 712 3603 34 12 91 chr1 16692168 16692684 -180502748 - IAPLTR2_Mm LTR ERVK 0 475 1 4 712 322 387 0 13 chr1 16693506 16693663 -180501769 - L2 LINE L2 -900 2519 2365 4 712 606 164 8 33 chr1 16693682 16693802 -180501630 + B3 SINE B2 1 117 -99 4 712 370 267 124 20 chr1 16694159 16694312 -180501120 - MLT1C LTR MaLR -13 454 286 4 712 271 377 49 0 chr1 16694982 16695104 -180500328 + MER45C DNA Tip100 45 172 -781 4 712 306 300 21 53 chr1 16695439 16695534 -180499898 + RSINE1 SINE B4 66 157 -8 4 712 1756 166 45 28 chr1 16696392 16696745 -180498687 - ORR1C1 LTR MaLR -19 359 1 4 712 910 243 28 5 chr1 16697155 16697366 -180498066 + B3 SINE B2 1 216 0 4 712 2387 99 9 0 chr1 16697434 16697758 -180497674 - ORR1A2 LTR MaLR 0 327 1 4 712 381 240 93 28 chr1 16697804 16697911 -180497521 - B1F1 SINE Alu 0 117 4 4 712 800 178 15 0 chr1 16697969 16698104 -180497328 + B1_Mus2 SINE Alu 5 141 -6 4 712 230 292 0 33 chr1 16698147 16698239 -180497193 - B4A SINE B4 -3 289 201 4 712 579 122 0 0 chr1 16698239 16698329 -180497103 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 4 712 734 81 16 0 chr1 16698337 16698460 -180496972 + (TCTCTG)n Simple_repeat Simple_repeat 2 126 0 4 712 357 197 0 0 chr1 16698470 16698536 -180496896 - B1_Mur3 SINE Alu -42 107 42 4 712 366 316 52 0 chr1 16698790 16698926 -180496506 + RSINE1 SINE B4 4 146 -19 4 712 342 0 0 0 chr1 16698931 16698969 -180496463 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 712 340 291 69 108 chr1 16699001 16699205 -180496227 + B4 SINE B4 28 223 -69 4 712 767 185 0 15 chr1 16699070 16699207 -180496225 + B1_Mur1 SINE Alu 15 149 0 4 712 1373 81 0 0 chr1 16699263 16699448 -180495984 - L1Md_F2 LINE L1 -19 6563 6379 4 712 279 0 0 0 chr1 16699630 16699661 -180495771 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 712 378 258 41 51 chr1 16699729 16699827 -180495605 - PB1D9 SINE Alu -21 99 3 4 712 570 115 0 49 chr1 16699876 16700059 -180495373 + CT-rich Low_complexity Low_complexity 3 176 0 4 712 553 129 0 45 chr1 16700142 16700321 -180495111 + CT-rich Low_complexity Low_complexity 3 173 0 4 712 823 116 32 0 chr1 16700383 16700538 -180494894 - RLTR10 LTR ERVK -4 386 227 4 712 241 161 0 0 chr1 16700566 16700622 -180494810 - RLTR10 LTR ERVK -72 318 263 4 712 2429 19 3 6 chr1 16700622 16700936 -180494496 - RLTR10 LTR ERVK -77 313 1 4 712 263 87 0 55 chr1 16700936 16701009 -180494423 + (TCC)n Simple_repeat Simple_repeat 3 71 0 4 712 823 116 32 0 chr1 16701020 16701175 -180494257 - RLTR10 LTR ERVK -4 386 227 4 712 241 161 0 0 chr1 16701203 16701259 -180494173 - RLTR10 LTR ERVK -72 318 263 4 712 2429 19 3 6 chr1 16701259 16701573 -180493859 - RLTR10 LTR ERVK -77 313 1 5 712 8955 16 0 2 chr1 16701575 16702572 -180492860 - RLTR10-int LTR ERVK -3 1984 990 5 712 382 289 12 25 chr1 16702654 16702817 -180492615 - RLTR10-int LTR ERVK -5987 1594 1434 5 712 4541 32 1 0 chr1 16702861 16703739 -180491693 - RLTR10-int LTR ERVK -995 992 41 5 712 3086 21 2 113 chr1 16703755 16704189 -180491243 - RLTR10 LTR ERVK -4 386 1 5 712 470 116 0 48 chr1 16704189 16704334 -180491098 + CT-rich Low_complexity Low_complexity 3 140 0 5 712 335 284 0 10 chr1 16704334 16704430 -180491002 - PB1D10 SINE Alu 0 117 23 5 712 348 270 0 0 chr1 16704545 16704619 -180490813 - ID4_ SINE ID -1 82 9 5 712 23 0 0 0 chr1 16704751 16704774 -180490658 + AT_rich Low_complexity Low_complexity 1 23 0 5 712 984 171 22 6 chr1 16704866 16705048 -180490384 - Lx4B LINE L1 -6 7052 6868 5 712 1397 88 14 23 chr1 16705284 16705505 -180489927 - RMER6A LTR ERVK -535 221 3 5 712 3682 151 153 62 chr1 16705508 16705651 -180489781 + MTC-int LTR MaLR 256 395 -863 5 712 833 186 14 0 chr1 16705651 16705791 -180489641 + B1_Mur4 SINE Alu 1 142 -8 5 712 3682 151 153 62 chr1 16705791 16706566 -180488866 + MTC-int LTR MaLR 396 1258 0 5 712 1580 11 27 11 chr1 16707049 16707233 -180488199 + B2_Mm1a SINE B2 1 187 -6 5 712 230 284 61 12 chr1 16707256 16707338 -180488094 - L2a LINE L2 -6 3420 3335 5 712 735 308 182 40 chr1 16707954 16708820 -180486612 - L2a LINE L2 -216 3210 2214 5 712 247 274 14 41 chr1 16708964 16709052 -180486380 + B3 SINE B2 1 91 -104 5 712 3571 226 65 108 chr1 16709137 16709606 -180485826 + Lx5 LINE L1 6149 6631 -419 5 712 1600 126 114 95 chr1 16709606 16709965 -180485467 - RLTR9A LTR ERVK -2 366 1 5 712 3571 226 65 108 chr1 16709965 16710437 -180484995 + Lx5 LINE L1 6632 7049 -1 5 712 1295 294 136 24 chr1 16710668 16711140 -180484292 + RMER1B Other Other 1 478 -588 5 712 2872 187 111 19 chr1 16711126 16711741 -180483691 + RMER1A Other Other 226 896 -134 5 712 5368 120 81 62 chr1 16711748 16712178 -180483254 - RLTR25A LTR ERVK 0 1103 687 5 712 1224 41 0 0 chr1 16712178 16712324 -180483108 - B1_Mm SINE Alu 0 147 2 5 712 5368 120 81 62 chr1 16712324 16712975 -180482457 - RLTR25A LTR ERVK -417 686 1 5 712 198 0 0 0 chr1 16712979 16713001 -180482431 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 712 351 105 0 0 chr1 16713001 16713057 -180482375 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 712 284 236 0 0 chr1 16713061 16713116 -180482316 + RMER1B Other Other 946 1000 -66 5 712 243 140 0 0 chr1 16713245 16713295 -180482137 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 5 712 927 170 0 7 chr1 16713557 16713705 -180481727 + B1_Mur2 SINE Alu 3 149 0 5 712 454 281 29 29 chr1 16714475 16714614 -180480818 - B1F1 SINE Alu -6 143 5 5 712 21 71 0 0 chr1 16714630 16714672 -180480760 + AT_rich Low_complexity Low_complexity 1 42 0 5 712 3594 238 79 141 chr1 16714707 16715443 -180479989 - Lx4A LINE L1 -30 7028 6403 5 712 320 127 0 0 chr1 16715443 16715498 -180479934 - B2_Mm2 SINE B2 -94 101 47 5 712 3594 238 79 141 chr1 16715498 16715528 -180479904 - Lx4A LINE L1 -30 6402 6376 5 712 1334 75 23 0 chr1 16715528 16715702 -180479730 - B2_Mm1t SINE B2 -14 179 2 5 712 3594 212 64 106 chr1 16715702 16716430 -180479002 - Lx4A LINE L1 -683 6375 5589 5 712 2546 64 6 58 chr1 16716430 16716795 -180478637 - L1_Mus2 LINE L1 0 6566 6221 5 712 2925 176 43 57 chr1 16716795 16717123 -180478309 - Lx4A LINE L1 -287 5590 5247 5 712 354 103 69 0 chr1 16717123 16717210 -180478222 + CT-rich Low_complexity Low_complexity 1 93 0 5 712 429 197 0 79 chr1 16717211 16717236 -180478196 - L1_Rod LINE L1 -600 5247 5224 5 712 623 13 0 13 chr1 16717236 16717313 -180478119 + (TTTCC)n Simple_repeat Simple_repeat 3 78 0 5 712 1260 107 17 6 chr1 16717317 16717495 -180477937 - B2_Mm2 SINE B2 -14 181 2 5 712 614 93 41 0 chr1 16717495 16717592 -180477840 - L1_Mur3 LINE L1 -619 5261 5161 5 712 1865 157 3 9 chr1 16717597 16717912 -180477520 + MTC LTR MaLR 105 417 -4 5 712 33544 77 13 5 chr1 16718096 16723343 -180472089 + L1Md_F2 LINE L1 311 5586 -297 5 712 8379 37 1 4 chr1 16723343 16724336 -180471096 + L1Md_F2 LINE L1 5587 6576 -6 5 712 6805 99 7 2 chr1 16724362 16725287 -180470145 + L1Md_F2 LINE L1 5642 6570 -12 5 712 636 64 63 18 chr1 16725383 16725494 -180469938 + L1Md_F3 LINE L1 6469 6584 0 5 712 392 284 316 16 chr1 16725548 16725779 -180469653 - MTEa LTR MaLR -4 375 32 5 712 324 0 0 0 chr1 16725813 16725849 -180469583 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 712 270 0 0 0 chr1 16725849 16725878 -180469554 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 712 384 294 38 89 chr1 16725881 16726038 -180469394 - ORR1E LTR MaLR -207 152 4 5 712 237 341 45 0 chr1 16726273 16726361 -180469071 + ID_B1 SINE B4 108 199 -25 5 712 311 309 62 39 chr1 16726667 16726735 -180468697 - B1F2 SINE Alu 0 149 82 5 712 1010 232 9 0 chr1 16726735 16726946 -180468486 - B3 SINE B2 -2 214 2 5 712 311 309 62 39 chr1 16726946 16727005 -180468427 - B1F2 SINE Alu -68 81 19 5 712 3040 45 5 106 chr1 16727012 16727457 -180467975 - MTB LTR MaLR 0 400 1 5 712 490 171 135 0 chr1 16727506 16727617 -180467815 + RMER13B LTR ERVK 430 555 -353 5 712 2303 66 140 35 chr1 16727651 16727852 -180467580 - RLTR47_MM LTR ERV1 -57 475 257 5 712 1004 94 151 0 chr1 16727852 16728011 -180467421 - B2_Mm1t SINE B2 -9 184 2 5 712 2303 66 140 35 chr1 16728011 16728231 -180467201 - RLTR47_MM LTR ERV1 -276 256 10 5 712 494 191 68 17 chr1 16728237 16728354 -180467078 + RMER13B LTR ERVK 552 674 -234 5 712 3017 21 0 0 chr1 16728354 16728691 -180466741 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 712 57381 17 17 2 chr1 16728691 16735068 -180460364 + IAPEz-int LTR ERVK 8 6481 0 5 712 3004 24 0 0 chr1 16735068 16735405 -180460027 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 712 894 205 46 38 chr1 16735405 16735643 -180459789 + RMER13B LTR ERVK 669 908 0 5 712 673 251 173 0 chr1 16735687 16735878 -180459554 - ID_B1 SINE B4 0 224 1 5 712 21 0 0 0 chr1 16736820 16736841 -180458591 + AT_rich Low_complexity Low_complexity 1 21 0 5 712 269 250 14 14 chr1 16736991 16737060 -180458372 + tRNA-Ala-GCA tRNA tRNA 5 73 -2 5 712 333 0 0 0 chr1 16737073 16737110 -180458322 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 712 661 248 0 7 chr1 16737160 16737306 -180458126 - ID_B1 SINE B4 0 224 80 5 712 351 0 0 0 chr1 16737617 16737656 -180457776 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 712 1330 208 31 7 chr1 16737661 16737951 -180457481 - MTD LTR MaLR -122 297 1 5 712 730 159 58 0 chr1 16737984 16738122 -180457310 - B1_Mur3 SINE Alu -1 148 3 5 712 598 186 16 6 chr1 16738233 16738380 -180457052 - RMER1B Other Other -11 1055 870 5 712 2913 35 9 0 chr1 16738482 16738825 -180456607 + ORR1A1 LTR MaLR 1 346 0 5 712 1481 250 116 22 chr1 16738986 16739705 -180455727 + RMER1B Other Other 2 592 -474 5 712 4311 167 103 112 chr1 16739708 16740746 -180454686 + RMER1A Other Other 2 1030 0 5 712 369 212 0 0 chr1 16740785 16740818 -180454614 + polypyrimidine Low_complexity Low_complexity 53 85 0 5 712 1034 144 0 6 chr1 16740818 16740999 -180454433 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 712 369 212 0 0 chr1 16740999 16741050 -180454382 + polypyrimidine Low_complexity Low_complexity 2 52 0 5 712 1212 106 0 0 chr1 16741050 16741229 -180454203 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 5 712 353 252 90 10 chr1 16741234 16741334 -180454098 + B1_Mus2 SINE Alu 18 125 -22 5 712 607 147 96 0 chr1 16741280 16741416 -180454016 + ORR1A3-int LTR MaLR 795 943 -1020 5 712 781 216 86 20 chr1 16741419 16741617 -180453815 + MTEa LTR MaLR 169 379 0 5 712 1392 87 5 16 chr1 16741778 16741966 -180453466 - B2_Mm1a SINE B2 -7 186 1 5 712 555 162 0 0 chr1 16742118 16742217 -180453215 + CT-rich Low_complexity Low_complexity 3 101 0 5 712 232 61 0 29 chr1 16742217 16742251 -180453181 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 5 712 7883 75 1 35 chr1 16742480 16743139 -180452293 - L1_Mus4 LINE L1 -1 6635 6012 5 712 1239 35 0 0 chr1 16743139 16743284 -180452148 - B1_Mm SINE Alu -2 145 1 5 712 7883 85 1 24 chr1 16743284 16743909 -180451523 - L1_Mus4 LINE L1 -625 6011 5388 5 712 5716 52 59 19 chr1 16743906 16744644 -180450788 - L1VL4 LINE L1 -1870 1689 906 5 712 5126 30 10 2 chr1 16744644 16745240 -180450192 - L1Md_F2 LINE L1 0 6582 5982 5 712 5716 65 43 28 chr1 16745240 16745337 -180450095 - L1VL4 LINE L1 -5397 905 830 5 712 525 32 0 0 chr1 16745337 16745400 -180450032 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 5 712 1264 77 53 0 chr1 16745400 16745569 -180449863 - B2_Mm2 SINE B2 -16 179 2 5 712 5403 98 0 52 chr1 16745569 16745705 -180449727 - L1VL4 LINE L1 -5473 829 708 5 712 1137 82 0 0 chr1 16745705 16745852 -180449580 - B1_Mus2 SINE Alu 0 147 1 5 712 5403 98 0 52 chr1 16745852 16746368 -180449064 - L1VL4 LINE L1 -5595 707 196 5 712 2235 193 36 128 chr1 16746371 16747057 -180448375 - RMER1B Other Other -194 872 16 5 712 22 0 0 0 chr1 16747342 16747364 -180448068 + AT_rich Low_complexity Low_complexity 1 22 0 5 712 1783 74 12 12 chr1 16747365 16747612 -180447820 - L1_Mus1 LINE L1 -1 6566 6320 5 712 21 0 0 0 chr1 16747622 16747643 -180447789 + AT_rich Low_complexity Low_complexity 1 21 0 5 712 436 282 16 24 chr1 16747643 16747770 -180447662 - PB1 SINE Alu 0 127 2 5 712 763 88 165 63 chr1 16747975 16748133 -180447299 - L1_Mus1 LINE L1 -47 6520 6347 5 712 258 250 208 0 chr1 16749595 16749667 -180445765 + B4A SINE B4 3 89 -203 5 712 2233 88 3 3 chr1 16749693 16750012 -180445420 - ORR1A2 LTR MaLR -8 319 1 5 712 423 326 25 81 chr1 16750013 16750210 -180445222 + B4A SINE B4 107 292 0 5 712 441 0 0 0 chr1 16750300 16750349 -180445083 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 712 228 35 0 0 chr1 16750349 16750377 -180445055 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 712 365 320 107 15 chr1 16750721 16750927 -180444505 + Tigger13a DNA MER2_type 2 226 -545 5 712 274 315 22 0 chr1 16750941 16751030 -180444402 + MLT1D LTR MaLR 1 91 -414 5 712 277 257 14 0 chr1 16751087 16751157 -180444275 + MLT1D LTR MaLR 393 463 -42 5 712 365 284 40 60 chr1 16751444 16751594 -180443838 + B1F1 SINE Alu 2 148 -1 5 712 231 247 0 110 chr1 16751629 16751720 -180443712 + RSINE1 SINE B4 2 82 -83 5 712 1171 107 50 22 chr1 16751775 16751956 -180443476 + B2_Mm2 SINE B2 1 186 -9 5 712 3005 62 44 35 chr1 16752219 16752244 -180443188 - L1Md_F2 LINE L1 -4 6578 6561 5 712 2473 98 135 7 chr1 16752244 16752665 -180442767 - IAPLTR2_Mm LTR ERVK 0 475 1 5 712 3005 62 44 35 chr1 16752665 16753072 -180442360 - L1Md_F2 LINE L1 -22 6560 6143 5 712 10284 126 53 6 chr1 16753432 16755050 -180440382 + L1Md_F LINE L1 392 2069 -3814 5 712 216 0 0 0 chr1 16755050 16755074 -180440358 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 712 10284 102 32 0 chr1 16755074 16755740 -180439692 + L1Md_F LINE L1 2070 2774 -3109 5 712 6154 101 0 192 chr1 16755740 16757054 -180438378 + L1Md_F LINE L1 4617 5677 -206 5 712 360 0 0 0 chr1 16757054 16757094 -180438338 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 5 712 495 213 0 36 chr1 16757304 16757416 -180438016 - PB1D9 SINE Alu -10 110 3 5 712 375 272 67 10 chr1 16757422 16757526 -180437906 - PB1D9 SINE Alu -6 114 5 5 712 276 175 17 17 chr1 16757549 16757607 -180437825 - ID_B1 SINE B4 -37 187 130 6 712 1113 83 7 0 chr1 16758130 16758274 -180437158 + B1_Mus1 SINE Alu 2 146 -2 6 712 7086 72 5 0 chr1 16760235 16761127 -180434305 + L1_Mus1 LINE L1 5672 6567 0 6 712 1277 243 99 59 chr1 16761164 16761640 -180433792 + RLTR22_Mur LTR ERVK 1144 1638 -210 6 712 21151 126 8 67 chr1 16761900 16766502 -180428930 + L1_Mus1 LINE L1 217 4572 -1995 6 712 1911 117 270 48 chr1 16766502 16766962 -180428470 - RLTR6_Mm LTR ERV1 -56 598 37 6 712 21151 126 8 67 chr1 16766962 16767002 -180428430 + L1_Mus1 LINE L1 4573 4609 -1958 6 712 262 209 209 0 chr1 16767002 16767069 -180428363 - RLTR6_Mm LTR ERV1 -573 81 1 6 712 21151 126 8 67 chr1 16767069 16769132 -180426300 + L1_Mus1 LINE L1 4610 6565 -2 6 712 593 228 94 12 chr1 16769945 16770105 -180425327 + RMER12 LTR ERVK 1148 1320 -2 6 712 1906 188 171 26 chr1 16770107 16770454 -180424978 - L1_Mur3 LINE L1 -62 5818 5403 6 712 5139 125 62 11 chr1 16770454 16771312 -180424120 + RMER17A2 LTR ERVK 1 902 -4 6 712 1906 189 152 23 chr1 16771312 16771401 -180424031 - L1_Mur3 LINE L1 -478 5402 5330 6 712 1755 158 12 87 chr1 16771401 16771803 -180423629 + ORR1B1 LTR MaLR 15 386 -8 6 712 6466 163 59 7 chr1 16771808 16773071 -180422361 - L1_Mur3 LINE L1 -589 5291 3964 6 712 888 252 92 92 chr1 16773080 16773181 -180422251 + RMER6D LTR ERVK 210 330 -390 6 712 288 0 0 0 chr1 16773181 16773213 -180422219 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 712 888 252 92 92 chr1 16773213 16773622 -180421810 + RMER6D LTR ERVK 331 719 -1 6 712 710 201 0 8 chr1 16773664 16773935 -180421497 + (CA)n Simple_repeat Simple_repeat 1 268 0 6 712 698 156 0 38 chr1 16773957 16774143 -180421289 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 712 306 328 95 36 chr1 16774301 16774554 -180420878 + L1M2 LINE L1 2191 2458 -3685 6 712 1569 170 161 15 chr1 16774600 16774935 -180420497 + ORR1C2 LTR MaLR 1 384 0 6 712 22 35 0 0 chr1 16774947 16774976 -180420456 + AT_rich Low_complexity Low_complexity 1 29 0 6 712 26 0 0 0 chr1 16775227 16775253 -180420179 + AT_rich Low_complexity Low_complexity 1 26 0 6 712 2515 74 0 9 chr1 16775258 16775597 -180419835 - L1_Mus2 LINE L1 -1 6565 6230 6 712 257 152 0 0 chr1 16775603 16775649 -180419783 + MT2B2 LTR ERVL 539 584 0 6 712 235 333 0 14 chr1 16775779 16775852 -180419580 - ID4_ SINE ID -6 77 6 6 712 402 279 32 8 chr1 16776089 16776225 -180419207 + B3 SINE B2 1 140 -53 6 1 6621 98 5 12 chr1 16776225 16777345 -180418087 - L1_Mus4 LINE L1 -239 6397 5300 6 713 1232 41 0 0 chr1 16777345 16777492 -180417940 - B1_Mm SINE Alu 0 147 1 6 713 10434 191 10 122 chr1 16777492 16778120 -180417312 - L1_Mur3 LINE L1 -583 5297 4695 6 713 695 299 15 10 chr1 16778120 16778323 -180417109 + MTD LTR MaLR 9 212 -207 6 713 10434 191 10 122 chr1 16778323 16779603 -180415829 - L1_Mur3 LINE L1 -583 4694 3464 6 713 228 35 0 0 chr1 16779603 16779632 -180415800 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 713 339 23 0 0 chr1 16779634 16779678 -180415754 - L1Md_F2 LINE L1 -12 6570 6527 6 713 883 89 7 7 chr1 16779678 16779814 -180415618 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 6 713 1121 224 112 25 chr1 16779922 16780242 -180415190 - L1VL4 LINE L1 -5701 601 254 6 713 216 0 0 0 chr1 16780416 16780440 -180414992 + (T)n Simple_repeat Simple_repeat 1 24 0 6 713 5338 156 63 25 chr1 16780628 16781496 -180413936 + RMER19B LTR ERVK 1 901 -1 6 713 684 231 52 0 chr1 16781497 16781670 -180413762 - Lx8 LINE L1 -933 6540 6359 6 713 487 275 115 9 chr1 16781781 16782003 -180413429 - MT2A LTR ERVL 0 601 316 6 713 892 283 41 107 chr1 16782028 16782440 -180412992 + RLTR23 LTR ERV1 8 392 -38 6 713 402 325 0 24 chr1 16782637 16782763 -180412669 - B1F1 SINE Alu -26 123 1 6 713 539 172 15 2 chr1 16782763 16782840 -180412592 - B1_Mur3 SINE Alu -41 79 1 6 713 451 224 114 70 chr1 16782840 16782917 -180412515 - B4 SINE B4 -206 86 3 6 713 329 194 14 0 chr1 16783270 16783342 -180412090 - ID4 SINE ID -1 82 10 6 713 490 308 23 8 chr1 16783367 16783498 -180411934 - B1F1 SINE Alu -7 142 10 6 713 287 167 15 0 chr1 16783526 16783592 -180411840 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 713 1061 222 81 119 chr1 16783664 16784134 -180411298 - RMER4A LTR ERVK 0 466 15 6 713 580 260 98 0 chr1 16784160 16784283 -180411149 - B3A SINE B2 -51 147 13 6 713 189 0 0 0 chr1 16784832 16784853 -180410579 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 6 713 207 0 0 0 chr1 16785002 16785025 -180410407 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 6 713 609 310 59 31 chr1 16785100 16785480 -180409952 - RLTR12B LTR ERVK -246 282 18 6 713 665 264 83 6 chr1 16785499 16785655 -180409777 - B3A SINE B2 -26 172 5 6 713 239 196 0 73 chr1 16786335 16786390 -180409042 - RSINE1 SINE B4 0 165 115 6 713 226 214 0 0 chr1 16786415 16786457 -180408975 - ORR1C1 LTR MaLR 0 384 343 6 713 225 94 0 0 chr1 16786836 16786868 -180408564 + (T)n Simple_repeat Simple_repeat 1 32 0 6 713 2054 123 13 105 chr1 16787016 16787398 -180408034 - ORR1C1 LTR MaLR -31 347 1 6 713 382 206 58 12 chr1 16787398 16787489 -180407943 - B4A SINE B4 -55 237 141 6 713 201 178 0 0 chr1 16787772 16787817 -180407615 + G-rich Low_complexity Low_complexity 3 47 0 6 713 557 232 96 0 chr1 16788119 16788244 -180407188 + B1F SINE Alu 2 138 -11 6 713 307 298 50 108 chr1 16789008 16789090 -180406342 - MER45A DNA Tip100 -5 173 88 6 713 5548 41 16 0 chr1 16789090 16789721 -180405711 - L1_Mus1 LINE L1 0 6567 5927 6 713 307 298 50 108 chr1 16789721 16789777 -180405655 - MER45A DNA Tip100 -91 87 43 6 713 323 308 133 57 chr1 16789917 16790248 -180405184 - L2a LINE L2 -39 3387 3032 6 713 3100 54 0 0 chr1 16790710 16791064 -180404368 - L1_Mus1 LINE L1 -1 6566 6213 6 713 7764 59 10 0 chr1 16791803 16791818 -180403614 - L1_Mus1 LINE L1 0 6567 6553 6 713 5552 41 2 0 chr1 16791818 16792449 -180402983 - L1Md_F3 LINE L1 -6 6578 5947 6 713 29739 98 25 20 chr1 16792449 16795907 -180399525 - L1_Mus1 LINE L1 -15 6552 3010 6 713 226 231 50 25 chr1 16795907 16795987 -180399445 + RLTR28 LTR ERVL 431 512 -12 6 713 29739 98 25 20 chr1 16795987 16796888 -180398544 - L1_Mus1 LINE L1 -15 3009 2085 6 713 298 0 23 23 chr1 16796888 16796931 -180398501 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 713 29739 125 22 19 chr1 16796931 16798339 -180397093 - L1_Mus1 LINE L1 -3799 2084 675 6 713 278 190 34 17 chr1 16798443 16798502 -180396930 - L1_Mus1 LINE L1 -5882 734 675 6 713 447 259 50 33 chr1 16798597 16798717 -180396715 + B1F1 SINE Alu 13 134 -15 6 713 336 62 36 48 chr1 16798726 16798810 -180396622 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 6 713 2390 121 40 3 chr1 16798885 16799233 -180396199 - L1Md_F2 LINE L1 -2 6580 6220 6 713 519 45 0 0 chr1 16799274 16799340 -180396092 + (CCA)n Simple_repeat Simple_repeat 2 67 0 6 713 1355 219 41 16 chr1 16799354 16799674 -180395758 - RLTR10D LTR ERVK -31 328 1 6 713 474 49 0 0 chr1 16800591 16800652 -180394780 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 713 4438 136 80 9 chr1 16802229 16802917 -180392515 + RMER19A LTR ERVK 1 737 0 6 713 244 264 13 77 chr1 16803260 16803276 -180392156 - B4 SINE B4 -218 74 2 6 713 360 242 0 0 chr1 16803276 16803338 -180392094 - ID4_ SINE ID -20 63 2 6 713 744 327 78 19 chr1 16803359 16803860 -180391572 + L2a LINE L2 2811 3337 -89 6 713 260 279 0 0 chr1 16803988 16804049 -180391383 + CT-rich Low_complexity Low_complexity 3 63 0 6 713 618 279 99 55 chr1 16804100 16804373 -180391059 - B4A SINE B4 -6 286 2 6 713 180 0 0 0 chr1 16804446 16804466 -180390966 + (GAA)n Simple_repeat Simple_repeat 1 20 0 6 713 242 191 40 81 chr1 16804560 16804647 -180390785 - ID_B1 SINE B4 -201 91 5 6 713 300 27 0 0 chr1 16804660 16804697 -180390735 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 713 779 211 82 60 chr1 16804863 16805045 -180390387 + B3 SINE B2 15 200 -16 6 713 200 148 0 69 chr1 16805046 16805104 -180390328 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 6 713 180 0 0 0 chr1 16805160 16805180 -180390252 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 713 1004 30 0 120 chr1 16805294 16805444 -180389988 - L1_Mus2 LINE L1 0 6566 6435 6 713 279 0 0 0 chr1 16805460 16805491 -180389941 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 6 713 225 368 37 22 chr1 16805761 16805897 -180389535 + MIR SINE MIR 21 158 -104 6 713 314 310 17 42 chr1 16805988 16806106 -180389326 + MER5A1 DNA MER1_type 49 163 -3 6 713 193 374 0 48 chr1 16806194 16806298 -180389134 + MIR SINE MIR 49 147 -61 6 713 438 266 126 50 chr1 16806667 16806944 -180388488 + MLT2B3 LTR ERVL 2 299 -255 6 713 1170 76 7 0 chr1 16806948 16807093 -180388339 + B1_Mm SINE Alu 1 146 -1 6 713 221 159 0 0 chr1 16807093 16807137 -180388295 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 713 426 178 0 0 chr1 16807317 16807407 -180388025 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 713 192 200 0 0 chr1 16807516 16807566 -180387866 + (CATA)n Simple_repeat Simple_repeat 1 50 0 6 713 693 314 95 104 chr1 16807738 16808382 -180387050 + RLTR26 LTR ERVK 1 638 -4 6 713 351 338 37 31 chr1 16808524 16808686 -180386746 + MLT1C LTR MaLR 279 441 -26 6 713 4129 133 102 13 chr1 16809423 16810117 -180385315 - RMER6A LTR ERVK 0 756 1 6 713 4201 90 3 55 chr1 16810339 16810937 -180384495 + RMER2 LTR ERV1 1 567 0 6 713 1181 315 39 23 chr1 16812945 16813329 -180382103 - Tigger7 DNA MER2_type -2091 400 11 6 713 581 276 27 14 chr1 16813433 16813580 -180381852 - B1F2 SINE Alu 0 149 1 6 713 496 265 45 0 chr1 16813670 16813802 -180381630 - L1MC4 LINE L1 -699 7343 7206 6 713 806 245 110 0 chr1 16814053 16814253 -180381179 + ID_B1 SINE B4 1 222 -2 6 713 231 310 9 91 chr1 16814300 16814410 -180381022 + LTR48 LTR ERV1 1 101 -543 6 713 2829 207 98 74 chr1 16814414 16815291 -180380141 + RLTR13D6 LTR ERVK 1 898 -4 6 713 258 290 58 51 chr1 16815527 16815665 -180379767 + LTR48 LTR ERV1 582 720 -67 6 713 1260 221 144 38 chr1 16815709 16816105 -180379327 - RLTR26 LTR ERVK -204 438 1 6 713 730 259 0 0 chr1 16816105 16816263 -180379169 - Lx8 LINE L1 -947 6526 6369 7 713 1624 230 28 25 chr1 16816266 16816623 -180378809 - MTE2b LTR MaLR 0 379 22 7 713 2258 128 31 38 chr1 16816624 16817279 -180378153 - RMER17D2 LTR ERVK 0 809 1 7 713 525 278 192 59 chr1 16817448 16817635 -180377797 + B3 SINE B2 1 212 -4 7 713 578 254 0 17 chr1 16817955 16818071 -180377361 + PB1 SINE Alu 9 122 -5 7 713 3562 68 23 84 chr1 16818071 16818584 -180376848 - RLTR45 LTR ERVK 0 482 1 7 713 18378 44 8 2 chr1 16818584 16820751 -180374681 - RLTR45-int LTR ERVK 0 7244 5065 7 713 4026 83 29 47 chr1 16820744 16821362 -180374070 - RLTR45-int LTR ERVK -3258 3986 3380 7 713 12008 45 12 12 chr1 16821332 16823158 -180372274 - RLTR45-int LTR ERVK -4032 3212 1322 7 713 1156 51 0 0 chr1 16823957 16824095 -180371337 - RLTR45-int LTR ERVK -6426 818 681 7 713 4350 67 123 16 chr1 16824384 16825009 -180370423 - RLTR45-int LTR ERVK -6552 692 1 7 713 3562 68 23 84 chr1 16825009 16825522 -180369910 - RLTR45 LTR ERVK 0 482 1 7 713 1385 115 0 10 chr1 16825534 16825728 -180369704 - B2_Mm1t SINE B2 0 193 2 7 713 667 239 96 0 chr1 16825752 16825961 -180369471 - Lx9 LINE L1 -2 7642 7414 7 713 690 270 158 25 chr1 16825959 16826481 -180368951 + L1_Mur3 LINE L1 2739 3374 -2769 7 713 261 0 0 0 chr1 16826481 16826510 -180368922 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 713 690 264 138 28 chr1 16826510 16826611 -180368821 + L1_Mur3 LINE L1 3344 3453 -2427 7 713 8567 33 1 2 chr1 16827504 16828972 -180366460 - L1Md_F2 LINE L1 0 6582 5116 7 713 6271 60 0 0 chr1 16828971 16829748 -180365684 + L1Md_F2 LINE L1 4341 5117 -766 7 713 2377 109 3 12 chr1 16830446 16830771 -180364661 - L1_Mus2 LINE L1 -1 6565 6244 7 713 5775 133 94 0 chr1 16831694 16832660 -180362772 - Lx LINE L1 0 6654 5598 7 713 1899 123 28 50 chr1 16832666 16833024 -180362408 + L1_Mur2 LINE L1 3361 3710 -2167 7 713 7779 70 4 58 chr1 16833035 16834408 -180361024 - L1_Mus1 LINE L1 -2 6565 5313 7 713 3685 145 72 0 chr1 16834397 16835023 -180360409 + L1_Mur2 LINE L1 3705 4375 -1502 7 713 1249 61 0 13 chr1 16835168 16835318 -180360114 - B1_Mus1 SINE Alu 0 148 1 7 713 357 223 58 10 chr1 16835709 16835724 -180359708 - ID_B1 SINE B4 -37 187 121 7 713 379 185 24 12 chr1 16835724 16835806 -180359626 - PB1D10 SINE Alu -29 88 6 7 713 441 0 0 0 chr1 16835818 16835867 -180359565 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 7 713 1454 33 0 6 chr1 16835867 16836048 -180359384 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 713 3157 66 11 0 chr1 16836071 16836451 -180358981 - L1_Mus2 LINE L1 -1 6565 6182 7 713 545 242 92 52 chr1 16837240 16837414 -180358018 - B2_Mm2 SINE B2 -14 181 1 7 713 240 342 59 71 chr1 16837967 16837982 -180357450 - MLT2B3 LTR ERVL -318 236 222 7 713 464 0 18 0 chr1 16837982 16838038 -180357394 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 713 240 342 59 71 chr1 16838038 16838149 -180357283 - MLT2B3 LTR ERVL -333 221 44 7 713 245 295 9 152 chr1 16838149 16838217 -180357215 - MTEa LTR MaLR -283 96 42 7 713 3050 24 0 43 chr1 16838217 16838569 -180356863 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 713 240 342 59 71 chr1 16838569 16838612 -180356820 - MLT2B3 LTR ERVL -511 43 1 7 713 403 53 123 0 chr1 16838796 16838853 -180356579 + MTB LTR MaLR 1 64 -343 7 713 702 65 0 11 chr1 16838855 16838948 -180356484 + B1_Mus2 SINE Alu 47 138 -9 7 713 518 0 0 16 chr1 16838948 16839011 -180356421 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 7 713 2786 57 3 0 chr1 16839011 16839362 -180356070 + MTB LTR MaLR 49 400 0 7 713 469 276 69 40 chr1 16840225 16840399 -180355033 + MLT1A LTR MaLR 26 204 -170 7 713 808 339 48 18 chr1 16840553 16840950 -180354482 - ERVL-E-int LTR ERVL -512 5155 4747 7 713 450 0 0 0 chr1 16841882 16841932 -180353500 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 713 2508 134 6 129 chr1 16842057 16842185 -180353247 + RMER6B LTR ERVK 11 98 -363 7 713 1247 68 0 0 chr1 16842185 16842333 -180353099 - B1_Mus1 SINE Alu 0 148 1 7 713 2508 134 6 129 chr1 16842333 16842716 -180352716 + RMER6B LTR ERVK 99 459 -2 7 713 21 82 0 0 chr1 16843323 16843372 -180352060 + AT_rich Low_complexity Low_complexity 1 49 0 7 713 398 51 51 0 chr1 16844705 16844764 -180350668 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 7 713 351 306 12 0 chr1 16845107 16845192 -180350240 - PB1D10 SINE Alu -19 98 13 7 713 342 0 0 0 chr1 16845337 16845375 -180350057 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 713 322 302 73 36 chr1 16845556 16845776 -180349656 - L1MCc LINE L1 -6180 243 16 7 713 275 242 10 0 chr1 16846444 16846543 -180348889 + CT-rich Low_complexity Low_complexity 3 102 0 7 713 636 14 0 0 chr1 16846659 16846732 -180348700 + (TAAG)n Simple_repeat Simple_repeat 2 74 0 7 713 1152 275 37 17 chr1 16846944 16847292 -180348140 + ORR1E LTR MaLR 1 355 -4 7 713 243 0 0 0 chr1 16848193 16848220 -180347212 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 713 647 263 27 46 chr1 16849029 16849248 -180346184 - Tigger5 DNA MER2_type -27 2379 2165 7 713 222 91 0 0 chr1 16849449 16849482 -180345950 + (C)n Simple_repeat Simple_repeat 1 33 0 7 713 5160 92 8 26 chr1 16849739 16850726 -180344706 - L1VL4 LINE L1 -2392 1167 202 7 713 1139 134 21 11 chr1 16850752 16850940 -180344492 + RLTR17 LTR ERVK 98 287 -405 7 713 1068 140 0 6 chr1 16850940 16851098 -180344334 - Lx LINE L1 -221 6787 6631 7 713 17691 133 164 22 chr1 16851083 16854122 -180341310 - L1Md_F LINE L1 -619 5264 1710 7 713 1131 102 0 7 chr1 16854122 16854134 -180341298 - B1_Mus1 SINE Alu -1 147 136 7 713 266 0 0 29 chr1 16854134 16854169 -180341263 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 7 713 1131 102 0 7 chr1 16854169 16854304 -180341128 - B1_Mus1 SINE Alu -13 135 1 7 713 17691 187 56 84 chr1 16854304 16855880 -180339552 - L1Md_F LINE L1 -4174 1709 217 7 713 258 32 0 0 chr1 16855881 16855912 -180339520 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 713 1344 101 11 0 chr1 16855912 16856091 -180339341 - B2_Mm1t SINE B2 -11 182 2 7 713 1559 137 62 38 chr1 16856092 16856380 -180339052 - Lx LINE L1 -15 6639 6345 7 713 563 180 0 0 chr1 16856389 16856501 -180338931 - L1_Mm LINE L1 -586 5297 5148 7 713 2788 52 6 3 chr1 16856510 16856873 -180338559 - MusHAL1 LINE L1 -2041 671 308 7 713 1437 159 17 4 chr1 16856873 16857113 -180338319 + RLTR17 LTR ERVK 286 528 -164 7 713 2245 127 84 11 chr1 16857114 16857495 -180337937 - RLTR9E LTR ERVK 0 409 1 7 713 558 66 0 13 chr1 16857495 16857572 -180337860 - ETnERV2-int LTR ERVK 0 7406 7331 7 713 2359 172 118 4 chr1 16857572 16858056 -180337376 - RLTR13D6 LTR ERVK -363 539 1 7 713 1678 124 8 8 chr1 16858065 16858317 -180337115 - ETnERV3-int LTR ERVK -28 5780 5529 7 713 353 125 0 59 chr1 16858330 16858398 -180337034 - RLTR45-int LTR ERVK -1172 6072 6009 7 713 16606 114 13 21 chr1 16858497 16861080 -180334352 - ETnERV2-int LTR ERVK -1179 6227 1660 7 713 33233 88 4 6 chr1 16861084 16866285 -180329147 + L1Md_F2 LINE L1 396 5585 -298 7 713 8635 54 0 0 chr1 16866286 16867281 -180328151 + L1Md_F2 LINE L1 5587 6581 -1 7 713 2731 317 44 29 chr1 16867281 16869016 -180326416 - ETnERV2-int LTR ERVK -3029 3138 1480 7 713 6763 33 0 0 chr1 16869115 16869864 -180325568 - L1Md_A LINE L1 -1 6581 5833 7 713 511 91 0 0 chr1 16869864 16869930 -180325502 - IAPLTR1a_Mm LTR ERVK -271 66 1 7 713 1076 162 12 0 chr1 16869936 16870109 -180325323 - ETnERV2-int LTR ERVK -2214 1100 926 7 713 3115 110 27 12 chr1 16870111 16870591 -180324841 + RLTR1C LTR ERV1 1 487 -16 7 713 3815 225 36 38 chr1 16870615 16871535 -180323897 - ETnERV2-int LTR ERVK -2395 919 2 7 713 3032 93 5 17 chr1 16871536 16871950 -180323482 - RLTR9E LTR ERVK 0 409 1 7 713 239 67 0 0 chr1 16871950 16871980 -180323452 - L1_Mus3 LINE L1 -479 6159 6130 7 713 4563 192 27 41 chr1 16871980 16872321 -180323111 + ORR1C1-int LTR MaLR 216 560 -810 7 713 3922 137 39 55 chr1 16872321 16873084 -180322348 + RMER17A LTR ERVK 1 751 0 7 713 4563 221 38 36 chr1 16873084 16873892 -180321540 + ORR1C1-int LTR MaLR 561 1368 -2 7 713 1561 167 106 77 chr1 16873888 16874238 -180321194 + ORR1C1 LTR MaLR 2 361 -17 7 713 7173 99 36 24 chr1 16874484 16875592 -180319840 - Lx LINE L1 0 6654 5564 7 713 828 238 74 14 chr1 16875634 16875851 -180319581 + Lx7 LINE L1 6992 7221 -475 7 713 360 97 0 0 chr1 16876021 16876083 -180319349 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 713 308 257 257 0 chr1 16876089 16876198 -180319234 - B3 SINE B2 -77 139 3 7 713 7254 142 112 13 chr1 16876677 16878139 -180317293 - ORR1A2-int LTR MaLR -356 1607 1 7 713 1825 106 42 175 chr1 16878139 16878459 -180316973 - ORR1A2 LTR MaLR 0 327 50 7 713 1289 27 0 20 chr1 16878459 16878609 -180316823 - B1_Mm SINE Alu 0 147 1 7 713 1825 106 42 175 chr1 16878609 16878665 -180316767 - ORR1A2 LTR MaLR -278 49 1 7 713 2441 11 3 0 chr1 16878940 16879224 -180316208 - MT2_Mm LTR ERVL -208 285 1 7 713 322 0 0 0 chr1 16879224 16879262 -180316170 - MERVL-int LTR ERVL 0 5485 5448 7 713 387 167 46 35 chr1 16879262 16879349 -180316083 - ORR1A2-int LTR MaLR -1323 640 553 7 713 3206 27 3 0 chr1 16879349 16879718 -180315714 - MERVL-int LTR ERVL -125 5360 4991 7 713 229 330 44 44 chr1 16880144 16880258 -180315174 + RLTR8 LTR ERVK 252 365 0 7 713 737 226 15 0 chr1 16880809 16880946 -180314486 + B1_Mur1 SINE Alu 1 139 -10 7 713 1376 108 19 9 chr1 16881192 16881408 -180314024 - RLTR14 LTR ERV1 -164 218 1 7 713 4684 16 2 0 chr1 16881980 16882472 -180312960 + MT2_Mm LTR ERVL 1 493 0 7 713 41332 16 14 0 chr1 16882472 16887759 -180307673 + MERVL-int LTR ERVL 1 5360 -125 7 713 378 179 46 35 chr1 16887759 16887846 -180307586 + ORR1A3-int LTR MaLR 553 640 -1323 7 713 322 0 0 0 chr1 16887846 16887884 -180307548 + MERVL-int LTR ERVL 5448 5485 0 7 713 4684 16 2 0 chr1 16887884 16888376 -180307056 + MT2_Mm LTR ERVL 1 493 0 7 713 420 262 17 111 chr1 16888541 16888721 -180306711 - MER57C2 LTR ERV1 -2 432 270 7 713 1133 110 75 0 chr1 16888868 16889041 -180306391 - B2_Mm2 SINE B2 -9 186 1 7 713 536 306 77 29 chr1 16889280 16889489 -180305943 + MTD LTR MaLR 2 220 -199 7 713 678 90 8 112 chr1 16889489 16889614 -180305818 - Lx4A LINE L1 -543 6515 6404 7 713 2527 116 33 9 chr1 16889607 16890035 -180305397 + Lx4A LINE L1 6571 7008 -50 7 713 704 210 122 12 chr1 16890069 16890233 -180305199 + MTD LTR MaLR 222 403 -16 7 713 367 278 0 30 chr1 16890537 16890637 -180304795 - PB1D10 SINE Alu 0 117 21 7 713 684 36 0 0 chr1 16890924 16891007 -180304425 + (TTTTG)n Simple_repeat Simple_repeat 3 85 0 7 713 833 230 6 0 chr1 16891314 16891479 -180303953 + MTD LTR MaLR 1 166 -253 7 713 3445 30 2 0 chr1 16891479 16891874 -180303558 - MTA_Mm LTR MaLR 0 396 1 7 713 8839 49 4 2 chr1 16891874 16892970 -180302462 - MTA_Mm-int LTR MaLR 0 1098 1 7 713 3169 44 0 0 chr1 16892972 16893361 -180302071 - MTA_Mm LTR MaLR -5 391 3 7 713 1051 225 55 8 chr1 16893363 16893601 -180301831 + MTD LTR MaLR 162 410 -9 7 713 316 382 93 36 chr1 16893681 16893906 -180301526 - LTR16A LTR ERVL -119 332 95 7 713 2681 74 8 8 chr1 16894223 16894590 -180300842 + L1Md_F2 LINE L1 6216 6582 0 7 713 570 67 0 0 chr1 16894753 16894828 -180300604 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 7 713 390 247 0 0 chr1 16895691 16895768 -180299664 - ID4 SINE ID -6 77 1 7 713 422 202 67 0 chr1 16896324 16896428 -180299004 - L1MA6 LINE L1 -1 6299 6189 7 713 717 299 19 10 chr1 16896430 16896636 -180298796 + MTD LTR MaLR 5 212 -207 7 713 2540 143 0 0 chr1 16896636 16897070 -180298362 - L1_Mur2 LINE L1 -1134 4743 4310 7 713 726 142 16 16 chr1 16897070 16897199 -180298233 - RLTR13D4 LTR ERVK 0 1033 905 7 713 2937 86 10 27 chr1 16897202 16897690 -180297742 - MusHAL1 LINE L1 -609 2103 1624 7 713 4218 172 1 6 chr1 16897689 16898477 -180296955 + L1_Mm LINE L1 4803 5586 -297 7 713 10862 122 11 11 chr1 16898479 16900771 -180294661 - L1VL4 LINE L1 -843 2716 424 7 713 2050 197 134 22 chr1 16900781 16901335 -180294097 - RMER17C-int LTR ERVK -2622 616 1 7 713 1736 144 89 39 chr1 16901343 16901726 -180293706 - RMER17C LTR ERVK -8 402 1 7 713 585 105 0 0 chr1 16901768 16901854 -180293578 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 7 713 677 225 73 32 chr1 16901855 16902075 -180293357 - L1_Mur3 LINE L1 -1250 4630 4402 7 713 21 0 0 0 chr1 16902287 16902308 -180293124 + AT_rich Low_complexity Low_complexity 1 21 0 8 713 376 298 10 0 chr1 16902474 16902578 -180292854 - PB1D10 SINE Alu -8 109 5 8 713 14122 18 0 0 chr1 16902943 16904649 -180290783 + L1Md_T LINE L1 3881 5586 -297 8 713 8079 53 0 0 chr1 16904649 16905645 -180289787 + L1Md_T LINE L1 5587 6582 0 8 713 21 0 0 0 chr1 16905750 16905771 -180289661 + AT_rich Low_complexity Low_complexity 1 21 0 8 713 1022 86 51 6 chr1 16905865 16906040 -180289392 + L1_Mus3 LINE L1 6446 6628 -10 8 713 824 189 7 0 chr1 16906655 16906798 -180288634 - B1_Mur1 SINE Alu -5 144 1 8 713 249 33 0 0 chr1 16907281 16907311 -180288121 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 713 183 252 86 121 chr1 16907344 16907484 -180287948 - L2a LINE L2 -1 3425 3291 8 713 496 228 85 156 chr1 16907569 16907793 -180287639 + B3 SINE B2 3 210 -6 8 89 297 307 81 50 chr1 16908155 16908316 -180287116 - LTR33 LTR ERVL 0 515 350 8 714 382 47 15 30 chr1 16909003 16909069 -180286363 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 8 714 1014 104 21 0 chr1 16909069 16909213 -180286219 - B1_Mm SINE Alu 0 147 1 8 714 20781 108 7 10 chr1 16909213 16909602 -180285830 - L1Md_F LINE L1 -1299 4584 4201 8 714 3324 31 10 0 chr1 16909602 16909994 -180285438 - MTA_Mm LTR MaLR 0 396 1 8 714 20781 108 7 10 chr1 16909994 16911381 -180284051 - L1Md_F LINE L1 -1683 4200 2821 8 714 3682 70 6 15 chr1 16911381 16911860 -180283572 - MT2C_Mm LTR ERVL 0 475 1 8 714 20781 126 10 32 chr1 16911860 16914102 -180281330 - L1Md_F LINE L1 -3063 2820 613 8 714 4076 73 7 0 chr1 16914598 16915402 -180280030 + L1VL4 LINE L1 406 1216 -2343 8 714 1171 120 11 0 chr1 16915403 16915578 -180279854 + B2_Mm1t SINE B2 3 179 -14 8 714 303 200 0 6 chr1 16915678 16915748 -180279684 + B2_Mm2 SINE B2 47 114 -102 8 714 216 0 0 0 chr1 16915766 16915790 -180279642 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 714 2537 138 116 2 chr1 16915839 16916303 -180279129 + Lx2 LINE L1 6127 6643 -354 8 714 1433 127 0 9 chr1 16916305 16916528 -180278904 + Lx2 LINE L1 6777 6997 0 8 714 1398 40 0 6 chr1 16916689 16916866 -180278566 + B2_Mm2 SINE B2 6 181 -14 8 714 372 230 118 91 chr1 16919177 16919287 -180276145 + PB1D10 SINE Alu 5 117 0 8 714 419 313 91 33 chr1 16919885 16920162 -180275270 - LTR48B LTR ERV1 -176 468 145 8 714 180 346 24 36 chr1 16920683 16920767 -180274665 - L2 LINE L2 -1158 2261 2179 8 714 211 204 20 0 chr1 16920994 16921043 -180274389 - MIR SINE MIR -122 140 91 8 714 563 261 124 19 chr1 16921087 16921450 -180273982 + L1MA5 LINE L1 5894 6294 -6 8 714 709 239 0 7 chr1 16921513 16921652 -180273780 + ID_B1 SINE B4 87 224 0 8 714 276 321 0 12 chr1 16921688 16921770 -180273662 - MIR SINE MIR -161 101 21 8 714 872 300 169 24 chr1 16921829 16922409 -180273023 + Arthur1 DNA Tip100 102 765 -3182 8 714 1911 182 42 3 chr1 16923136 16923495 -180271937 + ORR1D1 LTR MaLR 2 374 0 8 714 23 0 0 0 chr1 16923950 16923973 -180271459 + AT_rich Low_complexity Low_complexity 1 23 0 8 714 1327 45 5 10 chr1 16924086 16924290 -180271142 + (TTC)n Simple_repeat Simple_repeat 1 203 0 8 714 339 225 0 53 chr1 16924818 16924893 -180270539 - MER58C DNA MER1_type 0 215 145 8 714 452 318 11 22 chr1 16924900 16925080 -180270352 + CT-rich Low_complexity Low_complexity 2 179 0 8 714 442 237 8 50 chr1 16925582 16925702 -180269730 - MTEa LTR MaLR 0 379 265 8 714 1107 278 46 14 chr1 16926047 16926332 -180269100 - MTEa LTR MaLR -85 294 1 8 714 214 391 109 0 chr1 16926442 16926552 -180268880 - PB1 SINE Alu -5 122 1 8 714 378 0 0 0 chr1 16926576 16926618 -180268814 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 714 565 256 60 9 chr1 16926632 16926864 -180268568 - L1MC3 LINE L1 -272 7513 7270 8 714 2843 22 0 0 chr1 16926873 16927195 -180268237 - RLTRETN_Mm LTR ERVK 0 322 1 8 714 38576 31 5 8 chr1 16927195 16932056 -180263376 - MMETn-int LTR ERVK 0 4844 1 8 714 2832 25 0 0 chr1 16932056 16932378 -180263054 - RLTRETN_Mm LTR ERVK 0 322 1 8 714 529 250 34 7 chr1 16932510 16932659 -180262773 + Ricksha_c DNA MuDR 384 536 -1512 8 714 290 154 0 0 chr1 16932831 16932883 -180262549 + C-rich Low_complexity Low_complexity 1 52 0 8 714 642 301 109 24 chr1 16933401 16933612 -180261820 + MLT2B3 LTR ERVL 187 415 -139 8 714 852 254 93 116 chr1 16933652 16934040 -180261392 - MTE2a LTR MaLR 0 379 1 8 714 1899 295 137 42 chr1 16934040 16935254 -180260178 - MTE2a-int LTR MaLR 0 1580 1 8 714 1079 271 51 63 chr1 16935254 16935604 -180259828 - MTE2a LTR MaLR 0 379 34 8 714 1701 52 0 0 chr1 16935644 16935854 -180259578 - L1Md_T LINE L1 0 6582 6373 8 714 723 208 40 0 chr1 16935854 16935979 -180259453 + B1_Mus1 SINE Alu 13 142 -6 8 714 711 97 0 0 chr1 16935983 16936097 -180259335 + (GA)n Simple_repeat Simple_repeat 1 114 0 8 714 684 187 97 0 chr1 16936105 16936239 -180259193 + B1_Mur2 SINE Alu 3 149 0 8 714 380 228 225 10 chr1 16936438 16936675 -180258757 - L1MC3 LINE L1 -959 7083 6729 8 714 186 275 95 48 chr1 16936821 16936905 -180258527 - MER5B DNA MER1_type -90 88 1 8 714 37285 60 1 23 chr1 16937116 16943997 -180251435 - L1Md_T LINE L1 0 6582 99 8 714 223 324 125 9 chr1 16944040 16944152 -180251280 - L2b LINE L2 -3 3372 3248 8 714 263 282 82 41 chr1 16944186 16944308 -180251124 - MLT1A1 LTR MaLR 0 408 282 8 714 25 0 0 0 chr1 16944447 16944472 -180250960 + AT_rich Low_complexity Low_complexity 1 25 0 8 714 8114 23 0 0 chr1 16945353 16946549 -180248883 - L1Md_T LINE L1 -1 6581 5386 8 714 1075 293 103 25 chr1 16946626 16947074 -180248358 - Charlie1b DNA MER1_type -34 489 7 8 714 288 284 49 68 chr1 16947123 16947276 -180248156 + MIRc SINE MIR 113 254 -14 8 714 381 253 60 27 chr1 16948580 16948704 -180246728 + L1MA6 LINE L1 6107 6225 -75 8 714 387 0 0 0 chr1 16948704 16948747 -180246685 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 714 381 253 60 27 chr1 16948747 16948805 -180246627 + L1MA6 LINE L1 6226 6294 -6 8 714 995 68 8 0 chr1 16949662 16949795 -180245637 - B1_Mus1 SINE Alu 0 148 15 8 714 467 234 53 93 chr1 16949664 16949815 -180245617 - B4 SINE B4 -69 223 79 8 714 1035 129 17 34 chr1 16950779 16950956 -180244476 + B2_Mm2 SINE B2 15 188 -7 8 714 251 324 124 52 chr1 16951984 16952272 -180243160 + L2a LINE L2 2850 3228 -198 8 714 214 358 29 43 chr1 16952576 16952716 -180242716 - B1F2 SINE Alu 0 149 12 8 714 276 289 6 50 chr1 16952630 16952773 -180242659 - ID_B1 SINE B4 -49 175 11 8 714 215 368 113 30 chr1 16953072 16953302 -180242130 + MIRb SINE MIR 17 265 -3 8 714 194 139 0 44 chr1 16953387 16953432 -180242000 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 8 714 501 262 189 16 chr1 16953435 16953679 -180241753 - B4 SINE B4 -4 288 3 8 714 22 35 0 0 chr1 16954323 16954352 -180241080 + AT_rich Low_complexity Low_complexity 1 29 0 8 714 254 362 34 46 chr1 16954439 16954674 -180240758 + L2b LINE L2 3000 3236 -151 8 714 306 0 0 0 chr1 16955719 16955753 -180239679 + (TA)n Simple_repeat Simple_repeat 2 35 0 8 714 382 340 67 0 chr1 16956196 16956346 -180239086 - RSINE1 SINE B4 -4 161 2 8 714 378 0 0 0 chr1 16956586 16956628 -180238804 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 714 2238 310 89 11 chr1 16957559 16959275 -180236157 + L1_Mur3 LINE L1 2823 4672 -1208 8 714 2462 62 14 0 chr1 16959481 16959849 -180235583 - MusHAL1 LINE L1 -632 2080 1708 8 714 237 33 0 0 chr1 16959870 16959900 -180235532 + (TATG)n Simple_repeat Simple_repeat 3 32 0 8 714 364 102 8 50 chr1 16959902 16959970 -180235462 - B2_Mm2 SINE B2 -102 114 46 8 714 771 119 51 0 chr1 16960032 16960150 -180235282 - B2_Mm1t SINE B2 -67 126 3 8 714 5809 82 0 6 chr1 16960150 16961006 -180234426 - L1VL4 LINE L1 -990 2569 1719 8 714 201 39 0 0 chr1 16961010 16961036 -180234396 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 714 7241 35 7 2 chr1 16961094 16962007 -180233425 - L1Md_T LINE L1 -1 6581 5665 8 714 778 31 0 0 chr1 16962007 16962104 -180233328 + L1_Mm LINE L1 5373 5469 -414 8 714 6055 101 11 36 chr1 16962102 16964038 -180231394 - L1VL4 LINE L1 -1823 1736 1 8 714 444 311 32 39 chr1 16964050 16964204 -180231228 - B4A SINE B4 -77 215 63 8 714 974 250 77 30 chr1 16964348 16964777 -180230655 - L1MB4 LINE L1 -49 6131 5683 8 714 297 0 0 0 chr1 16966314 16966347 -180229085 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 8 714 793 289 139 32 chr1 16966403 16967205 -180228227 - L1MB5 LINE L1 -10 6173 5286 8 714 756 318 56 25 chr1 16967207 16967526 -180227906 - Lx5 LINE L1 -216 6834 6506 8 714 2249 214 131 10 chr1 16967626 16968215 -180227217 - Lx6 LINE L1 -1190 6270 5611 8 714 269 262 238 0 chr1 16968217 16968301 -180227131 - ORR1E LTR MaLR -202 157 54 8 714 590 257 169 7 chr1 16968527 16968715 -180226717 + L1M4 LINE L1 4959 5185 -961 8 714 477 34 0 0 chr1 16968715 16968774 -180226658 + (CAA)n Simple_repeat Simple_repeat 2 60 0 8 714 590 257 169 7 chr1 16968774 16968875 -180226557 + L1M4 LINE L1 5186 5295 -851 8 714 793 217 14 0 chr1 16968903 16969046 -180226386 + ID_B1 SINE B4 80 224 0 8 714 394 228 52 39 chr1 16969049 16969204 -180226228 + L1M4 LINE L1 5296 5452 -726 8 714 333 236 59 68 chr1 16969206 16969324 -180226108 + PB1D10 SINE Alu 1 117 0 8 714 327 314 123 56 chr1 16969605 16969784 -180225648 + B4A SINE B4 67 257 -35 8 714 228 326 176 7 chr1 16971849 16971991 -180223441 - MIRb SINE MIR -99 169 4 8 714 324 335 124 35 chr1 16972263 16972520 -180222912 + LTR16A LTR ERVL 98 377 -74 8 714 834 98 0 0 chr1 16972810 16972932 -180222500 + (TG)n Simple_repeat Simple_repeat 2 123 0 8 714 242 333 60 80 chr1 16974861 16975011 -180220421 - MLT1L LTR MaLR -156 454 308 8 714 1538 58 0 0 chr1 16975855 16976046 -180219386 + B2_Mm1t SINE B2 2 192 -1 8 714 737 219 0 27 chr1 16976055 16976205 -180219227 + B1_Mur2 SINE Alu 3 148 -1 8 714 305 270 134 50 chr1 16976440 16976717 -180218715 + L2 LINE L2 2383 2682 -737 8 714 221 360 40 8 chr1 16978227 16978353 -180217079 + MIRb SINE MIR 63 192 -76 8 714 852 146 44 66 chr1 16978427 16978610 -180216822 + URR1A DNA MER1_type 48 226 0 9 714 253 284 48 36 chr1 16978660 16978744 -180216688 + PB1D7 SINE Alu 14 98 -22 9 714 377 270 20 20 chr1 16978683 16978785 -180216647 + ID_B1 SINE B4 115 216 -8 9 714 308 291 30 12 chr1 16978789 16978898 -180216534 + ID4 SINE ID 2 111 -41 9 714 2273 180 56 41 chr1 16979987 16980526 -180214906 + Lx3C LINE L1 6419 6965 -11 9 714 795 295 103 4 chr1 16980684 16980745 -180214687 - B4A SINE B4 -3 289 226 9 714 375 23 0 0 chr1 16980745 16980789 -180214643 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 9 714 795 295 103 4 chr1 16980789 16980989 -180214443 - B4A SINE B4 -67 225 3 9 714 762 246 94 0 chr1 16981464 16981655 -180213777 - ORR1D1 LTR MaLR 0 374 166 9 714 388 27 0 63 chr1 16981656 16981691 -180213741 + (GAGAA)n Simple_repeat Simple_repeat 5 34 0 9 714 1058 97 6 17 chr1 16981691 16981869 -180213563 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 9 714 576 65 0 0 chr1 16981871 16981948 -180213484 + (GGGAGA)n Simple_repeat Simple_repeat 3 79 0 9 714 388 27 0 63 chr1 16981948 16981988 -180213444 + (GAGAA)n Simple_repeat Simple_repeat 5 44 0 9 714 465 232 297 0 chr1 16981988 16982126 -180213306 - ORR1D1 LTR MaLR -191 183 5 9 714 285 111 0 22 chr1 16982132 16982178 -180213254 - ORR1D1-int LTR MaLR -5 1365 1321 9 714 7377 211 61 23 chr1 16982653 16983622 -180211810 + Lx6 LINE L1 5525 6504 -956 9 714 423 38 0 0 chr1 16983622 16983675 -180211757 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 9 714 7377 215 69 20 chr1 16983675 16983893 -180211539 + Lx6 LINE L1 6505 6750 -710 9 714 545 52 0 13 chr1 16983893 16983971 -180211461 + (CCAA)n Simple_repeat Simple_repeat 2 78 0 9 714 7377 215 69 20 chr1 16983971 16984624 -180210808 + Lx6 LINE L1 6751 7456 -4 9 714 642 268 113 0 chr1 16984791 16984933 -180210499 - RSINE1 SINE B4 -2 163 6 9 714 282 29 0 0 chr1 16985460 16985495 -180209937 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 714 25 0 0 0 chr1 16985954 16985979 -180209453 + AT_rich Low_complexity Low_complexity 1 25 0 9 714 27 0 0 0 chr1 16986459 16986486 -180208946 + AT_rich Low_complexity Low_complexity 1 27 0 9 714 413 110 14 0 chr1 16986598 16986671 -180208761 + (TA)n Simple_repeat Simple_repeat 1 74 0 9 714 468 202 260 0 chr1 16987879 16987983 -180207449 + B1_Mur1 SINE Alu 1 131 -18 9 714 897 261 23 5 chr1 16988198 16988414 -180207018 - ID_B1 SINE B4 -3 221 2 9 714 207 0 0 0 chr1 16988430 16988453 -180206979 + (T)n Simple_repeat Simple_repeat 1 23 0 9 714 1444 260 50 17 chr1 16988951 16989370 -180206062 - RLTR18B LTR ERVK -19 493 1 9 714 607 271 84 0 chr1 16989370 16989525 -180205907 - B3 SINE B2 -46 170 3 9 714 273 266 12 60 chr1 16990426 16990454 -180204978 + B4A SINE B4 65 88 -204 9 714 454 222 9 57 chr1 16990454 16990559 -180204873 + B1F SINE Alu 4 103 -46 9 714 300 237 34 8 chr1 16990888 16990980 -180204452 + ID4_ SINE ID 8 103 -49 9 714 852 10 0 0 chr1 16991807 16991904 -180203528 + (CA)n Simple_repeat Simple_repeat 2 98 0 9 714 360 190 0 134 chr1 16992451 16992585 -180202847 + Lx4B LINE L1 6939 7054 -4 9 714 216 0 0 0 chr1 16994793 16994817 -180200615 + (A)n Simple_repeat Simple_repeat 1 24 0 9 714 197 33 33 0 chr1 16995035 16995065 -180200367 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 714 27 29 0 0 chr1 16995541 16995575 -180199857 + AT_rich Low_complexity Low_complexity 1 34 0 9 714 351 259 23 34 chr1 16995588 16995676 -180199756 + B4 SINE B4 6 92 -200 9 714 462 146 0 0 chr1 16995744 16995826 -180199606 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 9 714 31 0 0 0 chr1 16997301 16997332 -180198100 + AT_rich Low_complexity Low_complexity 1 31 0 9 714 209 34 48 63 chr1 16997673 16997736 -180197696 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 9 714 868 209 156 17 chr1 16998062 16998281 -180197151 + B4A SINE B4 8 256 -36 9 714 351 0 0 0 chr1 16998281 16998320 -180197112 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 714 868 209 156 17 chr1 16998320 16998338 -180197094 + B4A SINE B4 257 278 -14 9 714 569 312 179 87 chr1 16998449 16999091 -180196341 - MamRep605 Unknown Unknown -145 731 31 9 714 576 255 0 34 chr1 17000360 17000506 -180194926 - B4A SINE B4 -23 269 129 1 714 210 290 58 101 chr1 17000409 17000547 -180194885 - B1_Mus2 SINE Alu -2 145 14 2 714 4299 248 121 43 chr1 17001210 17003141 -180192291 + L1_Rod LINE L1 905 3031 -2816 3 714 480 217 200 0 chr1 17003141 17003256 -180192176 + B1_Mur1 SINE Alu 1 138 -11 4 714 4299 251 133 42 chr1 17003256 17003336 -180192096 + L1_Rod LINE L1 3032 3113 -2734 3 714 288 0 0 0 chr1 17003336 17003368 -180192064 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 714 4299 251 133 42 chr1 17003368 17003619 -180191813 + L1_Rod LINE L1 3114 3324 -2523 3 714 810 94 68 45 chr1 17003619 17003752 -180191680 - B1_Mus1 SINE Alu -10 138 3 6 714 4299 251 133 42 chr1 17003752 17004032 -180191400 + L1_Rod LINE L1 3325 3652 -2195 3 714 1748 211 68 21 chr1 17004049 17004518 -180190914 + L1_Rod LINE L1 3849 4339 -1508 3 714 647 141 13 47 chr1 17004586 17004735 -180190697 + RMER1B Other Other 919 1062 -4 7 714 1374 80 5 21 chr1 17004747 17004938 -180190494 + B2_Mm1t SINE B2 1 188 -5 8 714 22 35 0 0 chr1 17004994 17005023 -180190409 + AT_rich Low_complexity Low_complexity 1 29 0 9 714 507 170 35 18 chr1 17005025 17005139 -180190293 + L1_Rod LINE L1 5414 5529 -318 3 714 905 319 104 71 chr1 17005137 17005896 -180189536 + Lx9 LINE L1 6679 7462 -182 1 714 246 366 79 0 chr1 17006695 17006796 -180188636 - MER63D DNA AcHobo -690 371 263 1 714 180 0 0 0 chr1 17006863 17006883 -180188549 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 714 411 308 83 0 chr1 17006890 17007023 -180188409 - RSINE1 SINE B4 -21 144 1 1 714 570 126 0 0 chr1 17007053 17007156 -180188276 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 1 714 1091 124 6 0 chr1 17007156 17007333 -180188099 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 714 791 238 121 63 chr1 17007496 17007702 -180187730 + B4 SINE B4 2 219 -73 1 714 394 285 0 15 chr1 17007722 17007854 -180187578 + Lx7 LINE L1 7563 7692 -4 1 714 1199 161 65 12 chr1 17007978 17008224 -180187208 + L1VL1 LINE L1 8 266 -6156 1 714 5537 116 13 29 chr1 17008224 17009479 -180185953 + L1Md_F2 LINE L1 277 1514 -4369 1 714 17645 66 0 5 chr1 17009471 17011905 -180183527 + L1Md_F2 LINE L1 3163 5586 -297 1 714 7258 72 10 17 chr1 17011906 17012908 -180182524 + L1Md_F2 LINE L1 5588 6582 0 1 714 230 333 122 7 chr1 17012918 17013057 -180182375 + RSINE1 SINE B4 3 157 -8 2 714 696 45 0 0 chr1 17013109 17013197 -180182235 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 714 227 0 0 26 chr1 17013300 17013338 -180182094 + Lx7 LINE L1 7660 7696 0 2 714 380 323 87 0 chr1 17013353 17013548 -180181884 + L1MC1 LINE L1 5943 6154 -179 2 714 225 230 188 62 chr1 17013588 17013732 -180181700 + L1MC1 LINE L1 6163 6324 -20 2 714 283 249 69 46 chr1 17013752 17013828 -180181604 + Lx9 LINE L1 7445 7514 -130 2 714 387 0 0 0 chr1 17013828 17013871 -180181561 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 714 283 249 69 46 chr1 17013871 17013967 -180181465 + Lx9 LINE L1 7515 7621 -23 2 714 195 94 0 0 chr1 17014369 17014381 -180181051 + (T)n Simple_repeat Simple_repeat 1 12 0 2 714 1153 76 0 0 chr1 17014381 17014526 -180180906 - B1_Mm SINE Alu 0 147 3 2 714 195 94 0 0 chr1 17014526 17014545 -180180887 + (T)n Simple_repeat Simple_repeat 1 19 0 2 714 315 145 0 0 chr1 17015181 17015250 -180180182 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 714 449 331 24 0 chr1 17017346 17017515 -180177917 + L4 LINE RTE 1667 1839 -190 3 714 506 344 52 7 chr1 17017936 17018091 -180177341 - RSINE1 SINE B4 -2 163 2 3 714 396 241 69 0 chr1 17018151 17018238 -180177194 - ID4 SINE ID -46 106 14 3 714 290 256 220 11 chr1 17018238 17018329 -180177103 - PB1D10 SINE Alu -1 116 7 3 714 3546 130 3 11 chr1 17018700 17019415 -180176017 + L1VL4 LINE L1 334 1042 -2517 3 714 13225 150 23 24 chr1 17019413 17022071 -180173361 + L1_Mm LINE L1 1826 4481 -1402 3 714 265 73 0 0 chr1 17022065 17022120 -180173312 + L1_Mus4 LINE L1 6580 6634 -2 3 714 242 273 10 20 chr1 17022411 17022512 -180172920 + L1MB3 LINE L1 5353 5452 -731 3 714 293 219 129 21 chr1 17022625 17022765 -180172667 + L1MB3 LINE L1 5759 5913 -270 3 714 1118 68 7 0 chr1 17022974 17023121 -180172311 - B1_Mus1 SINE Alu 0 148 1 3 714 1108 69 0 7 chr1 17025412 17025558 -180169874 + B1_Mus2 SINE Alu 3 147 0 3 714 243 125 0 0 chr1 17025558 17025598 -180169834 + (A)n Simple_repeat Simple_repeat 1 40 0 4 714 590 299 92 35 chr1 17025755 17025984 -180169448 + B4A SINE B4 2 243 -49 4 714 697 222 53 7 chr1 17025992 17026167 -180169265 + B3A SINE B2 1 179 -37 4 714 554 220 37 0 chr1 17026206 17026315 -180169117 + B1_Mur1 SINE Alu 25 137 -12 4 714 183 234 179 86 chr1 17026503 17026553 -180168879 - L3 LINE CR1 -3467 1022 977 4 714 2160 73 0 10 chr1 17026553 17026842 -180168590 + L1_Mus1 LINE L1 6282 6567 0 4 714 183 234 179 86 chr1 17026842 17026908 -180168524 - L3 LINE CR1 -3513 976 895 4 714 207 154 0 71 chr1 17027115 17027171 -180168261 + T-rich Low_complexity Low_complexity 3 54 0 4 714 276 313 108 0 chr1 17027468 17027551 -180167881 + RSINE1 SINE B4 4 95 -70 4 714 1023 80 73 0 chr1 17027941 17028078 -180167354 + B1_Mus2 SINE Alu 1 147 0 4 714 5279 243 67 15 chr1 17028998 17030622 -180164810 + Lx9 LINE L1 5729 7619 -25 4 714 29 47 0 0 chr1 17030687 17030730 -180164702 + AT_rich Low_complexity Low_complexity 1 43 0 5 714 230 270 0 136 chr1 17032532 17032635 -180162797 + BC1_Mm scRNA scRNA 16 104 -48 5 714 21 0 0 0 chr1 17032728 17032749 -180162683 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 241 229 26 103 chr1 17033166 17033244 -180162188 - ID2 SINE ID -11 72 1 5 714 188 232 14 55 chr1 17033338 17033411 -180162021 - L3 LINE CR1 -474 4015 3946 5 714 6930 84 39 1 chr1 17034734 17035932 -180159500 - L1_Mus4 LINE L1 -4 6632 5369 5 714 5871 98 15 4 chr1 17035932 17037646 -180157786 - L1VL4 LINE L1 -1778 1781 50 5 714 249 350 41 0 chr1 17038842 17038939 -180156493 + ID_B1 SINE B4 115 215 -9 5 714 387 73 0 0 chr1 17038939 17038994 -180156438 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 714 219 103 0 0 chr1 17039091 17039130 -180156302 + (T)n Simple_repeat Simple_repeat 1 39 0 5 714 1138 48 14 0 chr1 17039131 17039276 -180156156 - B1_Mm SINE Alu 0 147 1 6 715 24 0 0 0 chr1 17040283 17040307 -180155125 + AT_rich Low_complexity Low_complexity 1 24 0 6 715 5255 62 16 4 chr1 17040672 17041363 -180154069 + L1_Mus3 LINE L1 5934 6632 -6 6 715 225 244 60 71 chr1 17041485 17041569 -180153863 + MTB_Mm LTR MaLR 58 140 -267 6 715 204 370 75 7 chr1 17042134 17042179 -180153253 - MIR SINE MIR -18 244 193 6 715 261 0 0 0 chr1 17042179 17042208 -180153224 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 715 204 370 75 7 chr1 17042208 17042309 -180153123 - MIR SINE MIR -70 192 89 6 715 908 110 22 0 chr1 17043138 17043274 -180152158 + B1_Mus2 SINE Alu 9 147 0 6 715 379 328 88 10 chr1 17044673 17044867 -180150565 + MER46C DNA MER2_type 11 219 -119 6 715 250 302 11 51 chr1 17045001 17045095 -180150337 - BC1_Mm scRNA scRNA -60 92 2 6 715 806 259 56 99 chr1 17047510 17047814 -180147618 - B4A SINE B4 0 292 2 6 715 237 267 54 75 chr1 17049547 17049640 -180145792 - MIR SINE MIR -143 119 29 7 715 208 323 0 15 chr1 17050500 17050566 -180144866 + L2c LINE L2 3258 3322 -65 7 715 6341 35 0 0 chr1 17051309 17052057 -180143375 + L1Md_T LINE L1 5835 6582 0 7 715 22 0 0 0 chr1 17052201 17052223 -180143209 + AT_rich Low_complexity Low_complexity 1 22 0 7 715 331 288 15 8 chr1 17052823 17052956 -180142476 + L1_Mus1 LINE L1 670 803 -5813 7 715 12841 107 25 11 chr1 17052978 17058257 -180137175 + L1_Mus1 LINE L1 766 6567 0 7 715 186 43 0 0 chr1 17058283 17058306 -180137126 + (A)n Simple_repeat Simple_repeat 1 23 0 7 715 259 219 81 30 chr1 17058804 17058903 -180136529 - L1MA9 LINE L1 -7 6305 6202 7 715 578 271 42 21 chr1 17060308 17060451 -180134981 - RSINE1 SINE B4 -18 147 2 7 715 288 300 12 0 chr1 17061101 17061181 -180134251 + ID4 SINE ID 3 83 0 7 715 5093 122 23 6 chr1 17062138 17062933 -180132499 + RLTR13C2 LTR ERVK 1 808 0 7 715 2862 215 11 3 chr1 17063031 17063688 -180131744 + L1Md_A LINE L1 446 1088 -5636 8 715 7192 19 0 0 chr1 17063680 17064491 -180130941 - L1Md_A LINE L1 -114 5769 4959 8 715 7905 13 0 0 chr1 17064492 17065329 -180130103 + L1Md_A LINE L1 5746 6582 0 8 715 32893 72 2 9 chr1 17065331 17069919 -180125513 + L1Md_F2 LINE L1 937 5588 -298 8 715 8201 70 3 1 chr1 17069920 17070914 -180124518 + L1Md_F2 LINE L1 5590 6585 0 8 715 201 154 0 0 chr1 17071211 17071250 -180124182 + GA-rich Low_complexity Low_complexity 2 40 0 8 715 327 281 126 32 chr1 17071335 17071632 -180123800 + RMER5 LTR ERV1 82 492 -42 8 715 243 0 0 0 chr1 17071844 17071871 -180123561 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 715 291 28 0 0 chr1 17072198 17072234 -180123198 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 715 898 178 14 0 chr1 17072408 17072554 -180122878 + B1_Mur2 SINE Alu 2 149 0 8 715 236 270 0 123 chr1 17072815 17072929 -180122503 + L2b LINE L2 3277 3378 -9 8 715 194 291 131 37 chr1 17073644 17073751 -180121681 + L2 LINE L2 2745 2861 -558 8 715 1394 188 240 3 chr1 17074149 17074486 -180120946 + MTD LTR MaLR 1 417 -2 9 715 352 289 13 0 chr1 17076597 17076673 -180118759 - ID2 SINE ID -6 77 1 9 715 195 42 0 0 chr1 17076920 17076944 -180118488 + (CAA)n Simple_repeat Simple_repeat 1 24 0 9 715 202 159 29 0 chr1 17077116 17077185 -180118247 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 9 715 242 29 0 28 chr1 17077243 17077279 -180118153 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 715 757 207 85 20 chr1 17078586 17078739 -180116693 - RSINE1 SINE B4 0 165 3 9 715 239 196 0 0 chr1 17079262 17079308 -180116124 - L1M3 LINE L1 -258 5910 5865 9 715 706 245 15 56 chr1 17080068 17080263 -180115169 + B3A SINE B2 1 187 -11 9 715 21 0 0 0 chr1 17082328 17082349 -180113083 + AT_rich Low_complexity Low_complexity 1 21 0 9 715 248 288 51 0 chr1 17082392 17082451 -180112981 - ID4 SINE ID -17 66 5 9 715 381 281 67 10 chr1 17083482 17083586 -180111846 - PB1D10 SINE Alu -7 110 1 1 715 387 321 27 18 chr1 17083826 17083937 -180111495 + PB1D10 SINE Alu 1 112 -5 1 715 198 103 0 0 chr1 17084721 17084750 -180110682 + (T)n Simple_repeat Simple_repeat 1 29 0 1 715 506 268 196 0 chr1 17084885 17085064 -180110368 + ID_B1 SINE B4 2 215 -9 1 715 198 0 0 0 chr1 17085536 17085558 -180109874 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 715 192 219 24 0 chr1 17085585 17085626 -180109806 + L4 LINE RTE 850 891 -1138 1 715 260 278 11 0 chr1 17087829 17087919 -180107513 + (CCG)n Simple_repeat Simple_repeat 3 93 0 1 715 183 42 0 0 chr1 17088045 17088069 -180107363 + (CCCG)n Simple_repeat Simple_repeat 3 26 0 1 715 576 0 0 0 chr1 17088335 17088399 -180107033 + (TGG)n Simple_repeat Simple_repeat 2 65 0 1 715 180 0 0 0 chr1 17089945 17089965 -180105467 + (T)n Simple_repeat Simple_repeat 1 20 0 1 715 28 48 0 0 chr1 17091031 17091073 -180104359 + AT_rich Low_complexity Low_complexity 1 42 0 1 715 442 205 13 0 chr1 17091183 17091261 -180104171 - ID4_ SINE ID -3 80 2 1 715 372 206 14 14 chr1 17091627 17091701 -180103731 + ID4 SINE ID 10 83 0 1 715 303 292 63 45 chr1 17091701 17091738 -180103694 + ID_B1 SINE B4 10 122 -102 1 715 2859 173 42 121 chr1 17092203 17092866 -180102566 - RMER19C LTR ERVK 0 611 1 1 715 229 331 42 49 chr1 17094176 17094232 -180101200 + ID_B1 SINE B4 24 165 -59 1 715 336 279 11 11 chr1 17094232 17094319 -180101113 + PB1D7 SINE Alu 1 87 -33 1 715 3216 68 5 18 chr1 17094947 17095348 -180100084 - MTA_Mm LTR MaLR 0 396 1 1 715 182 91 30 0 chr1 17095876 17095909 -180099523 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 715 480 299 14 29 chr1 17095948 17096086 -180099346 + LTR16B1 LTR ERVL 1 136 -344 1 715 568 329 60 45 chr1 17096225 17096676 -180098756 + ERVL-E-int LTR ERVL 2991 3504 -2210 1 715 493 339 107 39 chr1 17097327 17097815 -180097617 + ERVL-E-int LTR ERVL 4202 4722 -945 1 715 522 355 113 28 chr1 17098294 17098656 -180096776 + LTR16B LTR ERVL 62 454 -9 1 715 6453 132 50 8 chr1 17098673 17100003 -180095429 - Lx LINE L1 0 6654 5267 1 715 11257 92 6 101 chr1 17100054 17102253 -180093179 - L1Md_F2 LINE L1 -99 6483 4607 1 715 357 24 0 0 chr1 17102253 17102295 -180093137 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 715 11257 111 1 168 chr1 17102295 17103041 -180092391 - L1Md_F2 LINE L1 -1277 4606 3922 1 715 938 186 142 31 chr1 17103061 17103322 -180092110 - RLTR13D3 LTR ERVK -111 1003 714 1 715 1661 156 34 9 chr1 17103322 17103628 -180091804 + RLTR13D6 LTR ERVK 1 304 -679 1 715 9288 143 23 2 chr1 17103632 17103678 -180091754 - Lx LINE L1 -1979 3907 3842 1 715 207 0 0 0 chr1 17103678 17103701 -180091731 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 715 9288 143 23 2 chr1 17103701 17105242 -180090190 - Lx LINE L1 -2045 3841 2289 1 715 361 283 53 30 chr1 17105350 17105481 -180089951 - ID_B1 SINE B4 -44 180 47 1 715 364 118 29 0 chr1 17105581 17105649 -180089783 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 715 431 218 7 0 chr1 17105760 17105902 -180089530 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 1 715 261 0 0 0 chr1 17107404 17107433 -180087999 + (A)n Simple_repeat Simple_repeat 1 29 0 1 715 419 0 20 0 chr1 17107760 17107811 -180087621 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 715 185 0 40 0 chr1 17108562 17108587 -180086845 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 715 494 31 16 0 chr1 17108588 17108652 -180086780 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 715 387 0 0 0 chr1 17108759 17108802 -180086630 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 715 432 0 0 0 chr1 17108821 17108869 -180086563 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 715 235 323 0 0 chr1 17108869 17108931 -180086501 - ID4 SINE ID -19 64 3 1 715 899 71 0 16 chr1 17109196 17109325 -180086107 + (TTTTC)n Simple_repeat Simple_repeat 3 129 0 1 715 1243 49 7 0 chr1 17109325 17109467 -180085965 - B1_Mus2 SINE Alu -4 143 1 1 715 1342 157 72 0 chr1 17110579 17110802 -180084630 - Lx LINE L1 -14 6640 6402 1 715 399 229 73 0 chr1 17112847 17112956 -180082476 - PB1D10 SINE Alu 0 117 1 1 715 432 0 0 0 chr1 17113371 17113419 -180082013 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 715 677 195 168 53 chr1 17114669 17114913 -180080519 + RLTR10A LTR ERVK 140 411 0 1 715 21 0 0 0 chr1 17117049 17117070 -180078362 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 183 42 0 0 chr1 17123274 17123298 -180072134 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 715 294 29 0 0 chr1 17123962 17123997 -180071435 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 715 23 0 0 0 chr1 17124187 17124210 -180071222 + AT_rich Low_complexity Low_complexity 1 23 0 1 715 310 350 47 35 chr1 17124956 17125125 -180070307 + MIR SINE MIR 12 182 -80 1 715 2854 49 41 0 chr1 17125342 17125730 -180069702 + RLTR10A LTR ERVK 1 404 -7 1 715 1878 196 39 21 chr1 17125725 17126106 -180069326 - MTD LTR MaLR -22 397 10 1 715 201 108 0 0 chr1 17126164 17126201 -180069231 + (A)n Simple_repeat Simple_repeat 1 37 0 1 715 2109 115 24 30 chr1 17126455 17126786 -180068646 - ORR1A4 LTR MaLR 0 329 1 1 715 370 256 26 0 chr1 17127007 17127085 -180068347 - MER5A DNA MER1_type -2 187 108 1 715 251 256 37 49 chr1 17127361 17127443 -180067989 + MLT1C LTR MaLR 1 81 -309 1 715 301 328 1648 63 chr1 17127505 17127557 -180067875 + MLT1C LTR MaLR 323 329 -138 1 715 203 0 37 0 chr1 17127557 17127584 -180067848 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 1 715 301 261 54 0 chr1 17127584 17127668 -180067764 + MLT1C LTR MaLR 330 418 -49 1 715 348 83 0 0 chr1 17127670 17127718 -180067714 + (A)n Simple_repeat Simple_repeat 1 48 0 1 715 27 0 0 0 chr1 17128058 17128085 -180067347 + AT_rich Low_complexity Low_complexity 1 27 0 1 715 31030 75 16 22 chr1 17128124 17133630 -180061802 - L1_Mus2 LINE L1 0 6566 1118 1 715 3806 31 2 2 chr1 17133630 17134083 -180061349 - L1Md_T LINE L1 0 6582 6130 1 715 1736 124 17 34 chr1 17134083 17134208 -180061224 - L1_Mus2 LINE L1 -5540 1117 1001 1 715 493 266 14 0 chr1 17134320 17134459 -180060973 - L1Md_F LINE L1 -5801 718 578 1 715 456 187 206 0 chr1 17134777 17134884 -180060548 - B2_Mm2 SINE B2 -66 129 1 1 715 183 80 0 0 chr1 17135960 17135985 -180059447 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 1 715 362 336 29 0 chr1 17136000 17136137 -180059295 - B1F2 SINE Alu -8 141 1 1 715 423 0 0 0 chr1 17136148 17136195 -180059237 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 715 311 255 157 78 chr1 17136419 17136504 -180058928 - B3A SINE B2 -73 125 30 1 715 1158 155 92 0 chr1 17136504 17136711 -180058721 - URR1A DNA MER1_type 0 226 1 1 715 311 255 157 78 chr1 17136711 17136740 -180058692 - B3A SINE B2 -169 29 2 1 715 21 100 0 0 chr1 17138223 17138293 -180057139 + AT_rich Low_complexity Low_complexity 1 70 0 1 715 485 284 14 63 chr1 17139171 17139314 -180056118 + MER5A1 DNA MER1_type 10 145 -21 1 715 21 0 0 0 chr1 17139530 17139551 -180055881 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 754 204 216 0 chr1 17140209 17140385 -180055047 + B3 SINE B2 3 216 0 1 715 36 0 0 0 chr1 17140666 17140702 -180054730 + AT_rich Low_complexity Low_complexity 1 36 0 1 715 6884 107 22 40 chr1 17140703 17141839 -180053593 - Lx3A LINE L1 -7 6974 5860 1 715 539 147 10 0 chr1 17142360 17142462 -180052970 + CT-rich Low_complexity Low_complexity 4 106 0 1 715 651 130 16 8 chr1 17142447 17142485 -180052947 + polypyrimidine Low_complexity Low_complexity 88 125 0 1 715 1384 39 6 6 chr1 17142485 17142665 -180052767 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 715 651 130 16 8 chr1 17142665 17142750 -180052682 + polypyrimidine Low_complexity Low_complexity 1 87 0 1 715 1571 0 6 0 chr1 17142750 17142929 -180052503 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 715 25 65 0 0 chr1 17143771 17143817 -180051615 + AT_rich Low_complexity Low_complexity 1 46 0 1 715 322 245 151 0 chr1 17144751 17144857 -180050575 - Charlie1b DNA MER1_type -19 504 383 1 715 450 329 32 0 chr1 17144909 17145064 -180050368 - Charlie1b DNA MER1_type -358 165 6 1 715 495 296 152 8 chr1 17145068 17145467 -180049965 + Charlie4a DNA MER1_type 16 479 -29 1 715 306 282 51 72 chr1 17146657 17146852 -180048580 - L2c LINE L2 -121 3266 3076 1 715 202 206 9 47 chr1 17147941 17148048 -180047384 + CT-rich Low_complexity Low_complexity 3 105 0 1 715 183 296 136 23 chr1 17148235 17148411 -180047021 - MIRb SINE MIR -19 249 54 1 715 344 190 47 31 chr1 17148733 17148837 -180046595 + PB1D7 SINE Alu 47 150 0 1 715 522 114 0 0 chr1 17149260 17149339 -180046093 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 715 905 310 48 7 chr1 17149343 17149616 -180045816 - B4 SINE B4 -8 284 1 1 715 252 0 0 0 chr1 17149844 17149872 -180045560 + (A)n Simple_repeat Simple_repeat 1 28 0 1 715 385 325 0 0 chr1 17150638 17150758 -180044674 + PB1D7 SINE Alu 1 120 0 1 715 635 274 68 14 chr1 17150825 17151032 -180044400 - MER2 DNA MER2_type -16 329 112 1 715 230 160 20 0 chr1 17151746 17151796 -180043636 + CT-rich Low_complexity Low_complexity 2 52 0 1 715 1370 90 21 0 chr1 17155504 17155693 -180039739 + B2_Mm2 SINE B2 2 194 -1 1 715 493 220 97 9 chr1 17156080 17156217 -180039215 - ORR1D2 LTR MaLR -231 139 1 1 715 274 273 30 0 chr1 17156217 17156283 -180039149 - B4 SINE B4 -224 68 1 1 715 325 272 104 46 chr1 17156439 17156672 -180038760 + L1MC LINE L1 3474 3722 -2424 1 715 493 379 199 0 chr1 17156703 17157009 -180038423 - FordPrefect DNA Tip100 -1131 552 186 1 715 2363 172 22 0 chr1 17157051 17157459 -180037973 - MTC LTR MaLR 0 421 5 1 715 2529 67 73 0 chr1 17158317 17158675 -180036757 + MTA_Mm LTR MaLR 1 384 -12 1 715 250 297 0 13 chr1 17159194 17159269 -180036163 - MTEa LTR MaLR -12 367 294 1 715 336 301 21 11 chr1 17159276 17159370 -180036062 + RSINE1 SINE B4 2 96 -69 1 715 508 259 129 118 chr1 17159397 17159677 -180035755 - MTEa LTR MaLR -92 287 5 1 715 24 0 0 0 chr1 17160238 17160262 -180035170 + AT_rich Low_complexity Low_complexity 1 24 0 2 715 317 253 0 112 chr1 17160390 17160488 -180034944 + MTEa LTR MaLR 3 89 -290 2 715 609 224 68 6 chr1 17160461 17160634 -180034798 + MTEa LTR MaLR 204 419 0 2 715 23 0 0 0 chr1 17160809 17160832 -180034600 + AT_rich Low_complexity Low_complexity 1 23 0 2 715 214 162 0 0 chr1 17161176 17161213 -180034219 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 715 190 0 67 0 chr1 17161952 17161982 -180033450 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 715 274 260 97 29 chr1 17163403 17163506 -180031926 + MER121 Unknown Unknown 260 369 -43 2 715 697 330 16 88 chr1 17163886 17163960 -180031472 + B4 SINE B4 7 80 -212 2 715 245 0 86 0 chr1 17163960 17163995 -180031437 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 715 697 330 16 88 chr1 17163995 17164226 -180031206 + B4 SINE B4 81 290 -2 2 715 1170 69 0 0 chr1 17164554 17164698 -180030734 + B1_Mus2 SINE Alu 2 145 -2 2 715 222 118 0 0 chr1 17164700 17164734 -180030698 + (A)n Simple_repeat Simple_repeat 1 34 0 2 715 2838 124 9 2 chr1 17164782 17165212 -180030220 - Lx LINE L1 -4 6650 6218 2 715 2726 142 57 8 chr1 17165212 17165736 -180029696 + L1_Mur2 LINE L1 4903 5452 -425 2 715 385 284 148 7 chr1 17165757 17165805 -180029627 - MT2A LTR ERVL -370 163 10 2 715 395 268 11 11 chr1 17165805 17165892 -180029540 - MTEa LTR MaLR -283 96 10 2 715 641 266 75 9 chr1 17165897 17166216 -180029216 - ERVL-B4-int LTR ERVL 0 5714 5375 2 715 589 183 125 0 chr1 17166227 17166331 -180029101 - B1_Mur3 SINE Alu -22 127 11 2 715 934 269 35 7 chr1 17166349 17166634 -180028798 - MERVL_2A-int LTR ERVL -272 5489 5197 2 715 989 232 5 0 chr1 17166659 17166883 -180028549 - MERVL_2A-int LTR ERVL -2191 3566 3342 2 715 418 291 91 42 chr1 17166965 17167130 -180028302 - MERVL_2A-int LTR ERVL -2472 3289 3117 2 715 859 274 65 23 chr1 17167194 17167455 -180027977 - MT2A LTR ERVL -2 531 260 2 715 310 322 25 17 chr1 17167502 17167622 -180027810 - MTEb LTR MaLR -258 121 1 2 715 1341 265 21 9 chr1 17167674 17168002 -180027430 - MERVL_2A-int LTR ERVL -2645 3116 2785 2 715 873 267 15 48 chr1 17168520 17168579 -180026853 - MT2B LTR ERVL 0 601 543 2 715 237 65 0 0 chr1 17168579 17168610 -180026822 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 715 873 267 15 48 chr1 17168610 17168821 -180026611 - MT2B LTR ERVL -59 542 340 2 715 392 172 9 0 chr1 17168822 17168938 -180026494 + GA-rich Low_complexity Low_complexity 1 117 0 2 715 320 64 21 0 chr1 17168939 17168986 -180026446 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 715 543 31 0 0 chr1 17168986 17169050 -180026382 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 715 228 253 114 51 chr1 17169051 17169130 -180026302 - MT2B LTR ERVL -370 163 80 2 715 7434 75 19 0 chr1 17169131 17170269 -180025163 + L1_Mus1 LINE L1 5409 6567 0 2 715 557 239 9 9 chr1 17170281 17170395 -180025037 - MT2B LTR ERVL -412 121 8 2 716 723 255 44 63 chr1 17170674 17170993 -180024439 - MT2B LTR ERVL -33 568 100 2 716 344 355 20 55 chr1 17172393 17172539 -180022893 - ID_B1 SINE B4 -1 223 83 2 716 1887 209 8 18 chr1 17173003 17173387 -180022045 + RLTR14 LTR ERV1 3 382 0 2 716 1225 287 36 18 chr1 17173843 17174177 -180021255 + MLT1A0 LTR MaLR 10 349 -16 2 716 1642 219 51 43 chr1 17174455 17174870 -180020562 - MTD LTR MaLR 0 419 2 2 716 853 285 19 0 chr1 17174891 17175098 -180020334 - B3 SINE B2 -3 213 3 2 716 7627 75 5 0 chr1 17176076 17177297 -180018135 + L1_Mus1 LINE L1 5342 6567 0 2 716 1703 37 37 0 chr1 17177538 17177752 -180017680 - L1_Mus1 LINE L1 -759 5808 5587 2 716 2535 51 3 0 chr1 17177763 17178078 -180017354 + L1_Mus1 LINE L1 6252 6567 0 2 716 1227 326 79 36 chr1 17178078 17178747 -180016685 - MER99 DNA hAT? -130 701 4 2 716 686 12 0 12 chr1 17179243 17179327 -180016105 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 2 716 1109 250 46 3 chr1 17179395 17179768 -180015664 + L1_Mur3 LINE L1 877 1265 -6463 2 716 3363 209 93 54 chr1 17179775 17180377 -180015055 + Lx5 LINE L1 6182 6822 -228 2 716 255 93 0 0 chr1 17180377 17180420 -180015012 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 2 716 3363 209 93 54 chr1 17180420 17180651 -180014781 + Lx5 LINE L1 6823 7048 -2 2 716 2490 172 94 6 chr1 17180656 17181224 -180014208 + L1_Mur3 LINE L1 1246 1862 -4018 2 716 1068 135 5 10 chr1 17181231 17181426 -180014006 + Lx LINE L1 6449 6642 -12 2 716 334 26 0 0 chr1 17181439 17181478 -180013954 + L1_Mus3 LINE L1 6193 6231 -407 2 716 331 253 20 50 chr1 17181475 17181575 -180013857 + Lx7 LINE L1 7225 7321 -375 2 716 1960 36 8 4 chr1 17182457 17182705 -180012727 - L1Md_F2 LINE L1 -4 6580 6332 2 716 2201 37 4 0 chr1 17182705 17182973 -180012459 - L1Md_F2 LINE L1 -459 6123 5855 2 716 1637 26 0 15 chr1 17183010 17183205 -180012227 + B2_Mm1t SINE B2 2 193 0 2 716 240 364 50 10 chr1 17183206 17183306 -180012126 + MIR SINE MIR 19 122 -140 2 716 362 238 103 35 chr1 17183451 17183538 -180011894 + PB1D10 SINE Alu 2 94 -23 2 716 1567 213 76 0 chr1 17183690 17184099 -180011333 - Lx9 LINE L1 -1 7643 7204 2 716 23900 107 40 14 chr1 17184204 17185504 -180009928 - L1_Mus4 LINE L1 -5 6631 5298 2 716 5991 62 14 9 chr1 17185504 17186287 -180009145 - L1Md_F2 LINE L1 -13 6569 5783 2 716 23900 161 16 43 chr1 17186287 17189439 -180005993 - L1_Mus4 LINE L1 -586 5297 2154 2 716 1189 48 7 0 chr1 17189439 17189585 -180005847 - B1_Mm SINE Alu 0 147 1 2 716 23900 172 13 32 chr1 17189585 17191317 -180004115 - L1_Mus4 LINE L1 -3730 2153 541 2 716 710 11 0 0 chr1 17192300 17192390 -180003042 - L1Md_T LINE L1 0 6582 6493 2 716 21 0 0 0 chr1 17192472 17192493 -180002939 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 1328 95 0 0 chr1 17192493 17192682 -180002750 - L1_Mus1 LINE L1 0 6567 6379 2 716 582 177 7 159 chr1 17192691 17192842 -180002590 + MTC LTR MaLR 127 246 -154 2 716 1938 245 5 2 chr1 17193000 17193418 -180002014 + MTD LTR MaLR 1 419 0 2 716 3523 248 87 48 chr1 17193418 17194431 -180001001 + MTD-int LTR MaLR 1 1053 -205 2 716 1298 164 13 26 chr1 17194431 17194657 -180000775 + URR1B DNA MER1_type 1 223 -2 2 716 774 230 27 5 chr1 17194659 17194847 -180000585 + MTD-int LTR MaLR 1061 1252 -6 2 716 189 0 0 0 chr1 17194850 17194871 -180000561 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2 716 1041 178 36 10 chr1 17194872 17195065 -180000367 + MTD LTR MaLR 18 215 -204 2 716 1087 244 120 14 chr1 17195065 17195368 -180000064 - MTD LTR MaLR -20 399 55 2 716 2296 186 41 68 chr1 17195506 17196436 -179998996 + L1_Mur3 LINE L1 807 1771 -4106 2 716 3297 226 47 15 chr1 17196453 17197400 -179998032 - Lx4B LINE L1 -11 6989 5998 2 716 6826 92 42 11 chr1 17197399 17197725 -179997707 - L1_Mus4 LINE L1 -6 6630 6295 2 716 2421 115 24 36 chr1 17197725 17198141 -179997291 + RLTR9F LTR ERVK 1 411 -4 2 716 6826 110 33 7 chr1 17198141 17199280 -179996152 - L1_Mus4 LINE L1 -342 6294 5129 2 716 1499 140 42 4 chr1 17199260 17199525 -179995907 - Lx4B LINE L1 -1028 6030 5756 2 716 1058 129 6 12 chr1 17199529 17199702 -179995730 - RMER17D2 LTR ERVK 0 809 638 2 716 181 0 0 65 chr1 17199731 17199762 -179995670 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 716 529 257 14 56 chr1 17199882 17200026 -179995406 + RLTR18 LTR ERVK 5 142 -474 2 716 315 0 0 0 chr1 17200041 17200076 -179995356 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 716 10281 142 60 4 chr1 17200083 17201905 -179993527 - Lx4B LINE L1 -627 5250 3326 2 716 2086 122 0 10 chr1 17201893 17202207 -179993225 + L1_Mur2 LINE L1 5474 5784 -93 2 716 331 292 39 71 chr1 17202555 17202710 -179992722 - L1MC LINE L1 -767 5406 5257 2 716 256 300 29 0 chr1 17203061 17203202 -179992230 - L1MC LINE L1 -1267 4879 4733 2 716 192 217 0 0 chr1 17203293 17203339 -179992093 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 716 615 226 74 45 chr1 17203339 17203515 -179991917 - B3 SINE B2 -13 203 23 2 716 6785 111 41 6 chr1 17204000 17205196 -179990236 - Lx LINE L1 -8 6646 5404 2 716 3097 160 44 0 chr1 17205196 17205747 -179989685 + L1_Mur2 LINE L1 4037 4611 -1266 2 716 207 0 0 0 chr1 17206105 17206128 -179989304 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 716 836 274 19 5 chr1 17206296 17206505 -179988927 + B3 SINE B2 1 212 -4 2 716 278 246 0 0 chr1 17207388 17207453 -179987979 + CT-rich Low_complexity Low_complexity 1 65 0 2 716 1983 158 12 0 chr1 17207696 17208018 -179987414 + ORR1A3 LTR MaLR 1 326 0 2 716 272 290 151 0 chr1 17208274 17208367 -179987065 - Lx6 LINE L1 -464 6996 6890 2 716 230 294 205 19 chr1 17208365 17208580 -179986852 + Lx8 LINE L1 7184 7438 -35 2 716 27 29 0 0 chr1 17208613 17208647 -179986785 + AT_rich Low_complexity Low_complexity 1 34 0 2 716 636 269 112 19 chr1 17209412 17209670 -179985762 + L1MA9 LINE L1 5870 6151 -161 2 716 1422 249 21 32 chr1 17209717 17210091 -179985341 + ORR1D2 LTR MaLR 1 370 0 2 716 8528 124 32 0 chr1 17211088 17212478 -179982954 - L1_Mm LINE L1 -1510 4373 2940 2 716 2540 40 0 45 chr1 17212479 17212816 -179982616 - RLTRETN_Mm LTR ERVK 0 322 1 2 716 39229 42 6 11 chr1 17212816 17217684 -179977748 - MMETn-int LTR ERVK 0 4844 1 2 716 2550 37 0 45 chr1 17217684 17218021 -179977411 - RLTRETN_Mm LTR ERVK 0 322 1 2 716 10540 117 16 15 chr1 17218021 17220548 -179974884 - L1VL1 LINE L1 -972 2726 194 2 716 871 127 0 13 chr1 17220656 17220808 -179974624 + (TCC)n Simple_repeat Simple_repeat 3 152 0 2 716 1066 115 0 0 chr1 17220831 17220979 -179974453 - B1_Mus1 SINE Alu 0 148 1 2 716 1315 115 122 8 chr1 17220992 17221229 -179974203 - L1_Mus3 LINE L1 -1 6637 6374 2 716 535 62 12 12 chr1 17221858 17221939 -179973493 + (TTCC)n Simple_repeat Simple_repeat 1 81 0 2 716 1182 100 0 0 chr1 17221939 17222119 -179973313 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 716 306 0 0 0 chr1 17222332 17222366 -179973066 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2 716 572 122 12 0 chr1 17222457 17222539 -179972893 - L1_Mus3 LINE L1 -122 6516 6434 2 716 622 151 0 0 chr1 17222541 17222634 -179972798 - 4.5SRNA scRNA scRNA -1 93 1 2 716 802 67 22 15 chr1 17222634 17222770 -179972662 + L1_Mus3 LINE L1 6502 6638 0 2 716 221 119 0 23 chr1 17223211 17223254 -179972178 + (TATG)n Simple_repeat Simple_repeat 2 43 0 2 716 260 239 120 0 chr1 17223276 17223393 -179972039 - L1MA4 LINE L1 -368 5932 5802 2 716 746 288 53 19 chr1 17223538 17223860 -179971572 + L1MB7 LINE L1 5800 6132 -52 2 716 255 278 73 79 chr1 17224146 17224310 -179971122 - RSINE1 SINE B4 0 165 3 2 716 273 170 5 5 chr1 17224572 17224631 -179970801 - L1ME3 LINE L1 -286 6158 6093 2 716 1696 16 0 0 chr1 17224678 17224871 -179970561 - B2_Mm1t SINE B2 0 193 1 2 716 204 125 0 0 chr1 17224951 17224983 -179970449 + (T)n Simple_repeat Simple_repeat 1 32 0 2 716 1173 68 0 0 chr1 17224983 17225131 -179970301 - B1_Mus1 SINE Alu 0 148 1 3 716 246 298 108 42 chr1 17225155 17225414 -179970018 - L1ME1 LINE L1 -232 5932 5657 3 716 2228 129 102 3 chr1 17225694 17225878 -179969554 + BGLII_Mus LTR ERVK 1 186 -236 3 716 207 0 0 0 chr1 17225878 17225901 -179969531 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 716 2228 129 102 3 chr1 17225901 17226098 -179969334 + BGLII_Mus LTR ERVK 187 419 -3 3 716 23 0 0 0 chr1 17226637 17226660 -179968772 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 8676 271 53 22 chr1 17226738 17229455 -179965977 + MYSERV6-int LTR ERVK 358 3157 -5802 3 716 622 193 57 168 chr1 17229467 17229815 -179965617 - RLTRETN_Mm LTR ERVK -8 401 1 3 716 6699 200 32 13 chr1 17229815 17230081 -179965351 + MYSERV6-int LTR ERVK 3151 3421 -5538 3 716 2224 198 127 70 chr1 17230081 17230890 -179964542 - RLTR13A LTR ERVK 0 855 1 3 716 6699 200 32 13 chr1 17230890 17231695 -179963737 + MYSERV6-int LTR ERVK 3422 4233 -4726 3 716 4235 23 0 0 chr1 17231695 17232177 -179963255 - LTRIS_Mm LTR ERV1 0 482 1 3 716 6699 207 39 13 chr1 17232177 17232590 -179962842 + MYSERV6-int LTR ERVK 4234 4613 -4346 3 716 1111 239 64 78 chr1 17232609 17233224 -179962208 + MYSERV6-int LTR ERVK 257 899 -1427 3 716 4055 177 116 16 chr1 17233213 17234383 -179961049 + MYSERV6-int LTR ERVK 1003 2325 -1 3 716 2507 125 11 44 chr1 17234385 17234821 -179960611 + BGLII_Mus LTR ERVK 1 422 0 3 716 785 154 0 7 chr1 17235041 17235185 -179960247 + CT-rich Low_complexity Low_complexity 3 145 0 3 716 468 35 0 0 chr1 17235185 17235243 -179960189 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 3 716 22 35 0 0 chr1 17235363 17235392 -179960040 + AT_rich Low_complexity Low_complexity 1 29 0 3 716 464 319 138 38 chr1 17235394 17235793 -179959639 + Lx9 LINE L1 6986 7424 -220 3 716 312 27 0 0 chr1 17235797 17235834 -179959598 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3 716 513 32 0 0 chr1 17235967 17236030 -179959402 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 716 192 77 0 0 chr1 17236195 17236221 -179959211 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3 716 1094 76 7 0 chr1 17236221 17236366 -179959066 - B1_Mus1 SINE Alu -1 147 2 3 716 249 336 5 14 chr1 17236391 17236478 -179958954 - ID4 SINE ID -64 88 1 3 716 22 35 0 0 chr1 17236512 17236541 -179958891 + AT_rich Low_complexity Low_complexity 1 29 0 3 716 243 79 0 0 chr1 17236678 17236716 -179958716 + (T)n Simple_repeat Simple_repeat 1 38 0 3 716 1388 306 42 58 chr1 17237013 17237585 -179957847 - Lx8 LINE L1 -519 6954 6392 3 716 719 230 0 21 chr1 17237599 17237741 -179957691 - B1_Mur4 SINE Alu -1 149 11 3 716 580 271 6 29 chr1 17237752 17237923 -179957509 - Lx8 LINE L1 -1093 6380 6214 3 716 234 167 94 12 chr1 17238833 17238918 -179956514 - L1M3 LINE L1 -3304 2836 2745 3 716 23 54 0 0 chr1 17239023 17239060 -179956372 + AT_rich Low_complexity Low_complexity 1 37 0 3 716 25 31 0 0 chr1 17239208 17239240 -179956192 + AT_rich Low_complexity Low_complexity 1 32 0 3 716 327 303 0 0 chr1 17239935 17240024 -179955408 + PB1D10 SINE Alu 27 115 -2 3 716 1603 296 51 26 chr1 17240655 17240886 -179954546 - Lx9 LINE L1 -646 6998 6758 3 716 2063 110 46 60 chr1 17240886 17241301 -179954131 + RLTR9E LTR ERVK 1 409 0 3 716 1603 296 51 26 chr1 17241301 17241654 -179953778 - Lx9 LINE L1 -887 6757 6399 3 716 201 74 0 0 chr1 17241654 17241681 -179953751 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 716 1224 284 45 79 chr1 17241681 17242391 -179953041 - Lx9 LINE L1 -1214 6259 5520 3 716 400 324 29 14 chr1 17242397 17242535 -179952897 - B1F SINE Alu -8 141 2 3 716 3068 154 32 25 chr1 17243202 17243762 -179951670 - RMER15 LTR ERVL -11 564 1 3 716 326 267 242 45 chr1 17243964 17244082 -179951350 + B3A SINE B2 2 156 -42 3 716 303 28 0 0 chr1 17244082 17244118 -179951314 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 716 414 0 0 0 chr1 17244118 17244163 -179951269 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 716 326 267 242 45 chr1 17244163 17244200 -179951232 + B3A SINE B2 157 188 -10 3 716 329 296 131 38 chr1 17246458 17246641 -179948791 + MLT1C LTR MaLR 136 335 -132 3 716 220 308 11 21 chr1 17247178 17247271 -179948161 + GA-rich Low_complexity Low_complexity 2 93 0 3 716 4795 52 6 40 chr1 17247304 17247951 -179947481 + L1_Mus2 LINE L1 5941 6565 -1 3 716 230 384 52 58 chr1 17248005 17248160 -179947272 - MIRb SINE MIR -109 159 6 3 716 183 129 0 0 chr1 17248655 17248686 -179946746 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 3 716 4984 112 48 9 chr1 17249668 17250467 -179944965 + RLTR22_Mur LTR ERVK 1 830 -1018 3 716 417 290 56 94 chr1 17250639 17250852 -179944580 + RMER12 LTR ERVK 1101 1305 -17 3 716 261 243 0 0 chr1 17251434 17251504 -179943928 + (TATG)n Simple_repeat Simple_repeat 1 70 0 3 716 22 0 0 0 chr1 17251792 17251814 -179943618 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 7025 34 0 1 chr1 17251829 17252666 -179942766 - L1Md_T LINE L1 0 6582 5747 3 716 8896 15 0 0 chr1 17252666 17253702 -179941730 + L1_Mm LINE L1 3653 4688 -1195 3 716 17752 162 16 20 chr1 17253920 17257086 -179938346 - L1_Mm LINE L1 -984 4899 1718 3 716 237 61 30 0 chr1 17257086 17257119 -179938313 - U2 snRNA snRNA -154 34 1 3 716 17752 162 16 20 chr1 17257119 17257330 -179938102 - L1_Mm LINE L1 -984 1717 1504 3 716 16747 95 57 21 chr1 17257371 17260921 -179934511 - L1Md_F2 LINE L1 -12 6570 2880 3 716 3376 108 2 19 chr1 17260918 17261306 -179934126 - L1Md_F2 LINE L1 -4117 1766 1387 3 716 2688 53 18 0 chr1 17261306 17261644 -179933788 + ORR1A1 LTR MaLR 3 346 0 3 716 3376 137 10 57 chr1 17261644 17262400 -179933032 - L1Md_F2 LINE L1 -4497 1386 666 3 716 2065 214 14 34 chr1 17262852 17263354 -179932078 - L1VL4 LINE L1 -5604 698 207 3 716 624 277 50 124 chr1 17263356 17263760 -179931672 + MTE2a LTR MaLR 3 376 -3 3 716 22 0 0 0 chr1 17263807 17263829 -179931603 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 268 242 15 15 chr1 17263980 17264047 -179931385 + CT-rich Low_complexity Low_complexity 5 71 0 3 716 23 0 0 0 chr1 17264110 17264133 -179931299 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 1041 265 139 0 chr1 17264792 17265101 -179930331 - MTD LTR MaLR 0 419 68 3 716 2331 282 82 6 chr1 17265107 17265413 -179930019 - RMER1C Other Other -7 1335 1011 3 716 510 17 0 0 chr1 17265413 17265472 -179929960 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 716 2331 282 82 6 chr1 17265472 17265895 -179929537 - RMER1C Other Other -332 1010 551 3 716 6235 48 60 5 chr1 17265941 17266751 -179928681 + RLTR13A LTR ERVK 1 855 0 3 716 507 185 0 0 chr1 17266902 17266983 -179928449 - MTD LTR MaLR -338 81 1 3 716 4573 223 55 56 chr1 17266983 17268225 -179927207 - MTD-int LTR MaLR 0 1258 18 3 716 1493 219 120 16 chr1 17268248 17268624 -179926808 - MTD LTR MaLR -4 415 1 3 716 212 143 24 0 chr1 17268848 17268890 -179926542 + CT-rich Low_complexity Low_complexity 2 44 0 3 716 21 36 0 0 chr1 17269220 17269248 -179926184 + AT_rich Low_complexity Low_complexity 1 28 0 3 716 289 335 172 25 chr1 17270070 17270471 -179924961 - L2 LINE L2 -367 3052 2593 3 716 2660 157 22 42 chr1 17270972 17271519 -179923913 - L1_Mur1 LINE L1 -949 4937 4402 3 716 183 129 0 0 chr1 17271847 17271878 -179923554 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 716 679 120 0 17 chr1 17272776 17272895 -179922537 + (GGA)n Simple_repeat Simple_repeat 2 118 0 3 716 207 86 86 0 chr1 17273056 17273114 -179922318 + T-rich Low_complexity Low_complexity 2 64 0 3 716 1154 82 0 0 chr1 17273116 17273263 -179922169 - B1_Mus1 SINE Alu 0 148 2 3 716 386 298 124 7 chr1 17273418 17273637 -179921795 - RMER20B LTR ERVK -223 404 168 3 716 421 277 0 0 chr1 17273784 17273878 -179921554 + Lx7 LINE L1 6616 6709 -987 3 716 3545 240 122 30 chr1 17273881 17274099 -179921333 + L1MA8 LINE L1 3054 3274 -2612 3 716 3608 148 16 26 chr1 17274099 17274721 -179920711 + Lx2B LINE L1 6381 6996 -4 3 716 4697 232 162 38 chr1 17274721 17276659 -179918773 + L1MA8 LINE L1 3275 5518 -662 3 716 500 315 20 7 chr1 17276734 17276881 -179918551 + MTEb LTR MaLR 1 149 -230 3 716 326 261 54 0 chr1 17276993 17277104 -179918328 + L1MA8 LINE L1 5736 5852 -439 3 716 1467 294 54 29 chr1 17277108 17277250 -179918182 + MT2A LTR ERVL 5 145 -388 3 716 3376 135 241 2 chr1 17277250 17277843 -179917589 + RMER19A LTR ERVK 3 737 0 3 716 1476 294 54 29 chr1 17277843 17278142 -179917290 + MT2A LTR ERVL 146 457 -76 3 716 2899 126 24 0 chr1 17278143 17278637 -179916795 + MusHAL1 LINE L1 1081 1586 -1126 3 716 36456 41 13 16 chr1 17278635 17284465 -179910967 - L1Md_T LINE L1 -2 6583 583 3 716 226 316 59 59 chr1 17284465 17284566 -179910866 - RLTR45 LTR ERVK -378 104 4 3 716 36456 41 13 16 chr1 17284566 17284897 -179910535 - L1Md_T LINE L1 -2 582 241 3 716 913 118 82 0 chr1 17284893 17285063 -179910369 + L1_Mus1 LINE L1 2776 2959 -2924 3 716 11722 104 34 9 chr1 17285040 17287619 -179907813 + L1_Mus1 LINE L1 3954 6567 0 3 716 386 289 42 0 chr1 17287601 17287791 -179907641 + L1M3 LINE L1 5461 5658 -531 3 716 1155 125 120 0 chr1 17287817 17288001 -179907431 + RLTR41 LTR ERV1 175 380 -66 3 716 547 123 9 28 chr1 17288001 17288110 -179907322 + GA-rich Low_complexity Low_complexity 2 108 0 3 716 591 15 0 0 chr1 17288179 17288247 -179907185 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 716 297 0 0 0 chr1 17288247 17288279 -179907153 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 716 706 69 68 12 chr1 17289298 17289459 -179905973 + (TCTA)n Simple_repeat Simple_repeat 3 172 0 3 716 282 87 0 0 chr1 17289459 17289505 -179905927 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 716 391 231 26 0 chr1 17289667 17289771 -179905661 - Lx8 LINE L1 -938 6535 6453 3 716 652 142 47 0 chr1 17289777 17289883 -179905549 + ORR1D1 LTR MaLR 264 374 0 3 716 294 278 31 31 chr1 17289894 17290057 -179905375 - Lx8 LINE L1 -1596 6048 5886 3 716 907 217 68 19 chr1 17290061 17290268 -179905164 - MTC LTR MaLR -8 413 197 3 716 340 118 14 14 chr1 17290269 17290338 -179905094 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 3 716 225 94 0 0 chr1 17290518 17290550 -179904882 + (CAT)n Simple_repeat Simple_repeat 3 34 0 3 716 1113 295 75 16 chr1 17290550 17291063 -179904369 - Lx6 LINE L1 -35 7425 6506 3 716 812 294 17 3 chr1 17291096 17291355 -179904077 - Lx6 LINE L1 -687 6363 6075 3 716 1608 181 14 14 chr1 17291364 17291718 -179903714 + Lx6 LINE L1 5704 6057 -1403 3 716 1218 176 19 0 chr1 17291719 17291924 -179903508 - MTC LTR MaLR -212 209 1 3 716 810 219 44 27 chr1 17291940 17292165 -179903267 - Lx8 LINE L1 -11 5836 5608 3 716 200 163 23 0 chr1 17292827 17292870 -179902562 + (CAG)n Simple_repeat Simple_repeat 2 45 0 3 716 1196 126 93 13 chr1 17293003 17293228 -179902204 - RMER4B LTR ERVK -342 243 1 3 716 1511 201 9 9 chr1 17293230 17293546 -179901886 - MurERV4-int LTR ERVK -2 5258 4943 3 716 5758 224 76 56 chr1 17293547 17295210 -179900222 - MurERV4-int LTR ERVK -3525 1735 40 3 716 1537 211 126 28 chr1 17295266 17295718 -179899714 - RMER4B LTR ERVK -56 555 17 3 716 366 156 0 0 chr1 17295722 17295786 -179899646 + CT-rich Low_complexity Low_complexity 1 64 0 3 716 594 292 73 18 chr1 17295787 17295951 -179899481 - B3A SINE B2 -25 173 1 3 716 515 324 26 42 chr1 17296165 17296355 -179899077 + ORR1E LTR MaLR 9 195 -164 3 716 993 274 10 67 chr1 17296579 17296892 -179898540 - Lx5 LINE L1 0 7050 6756 3 716 1147 64 0 0 chr1 17297106 17297247 -179898185 + B1_Mus1 SINE Alu 2 142 -6 3 716 249 33 0 0 chr1 17297249 17297279 -179898153 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 716 561 271 0 12 chr1 17298504 17298676 -179896756 - Lx5 LINE L1 -777 6273 6104 3 716 5119 110 30 14 chr1 17299785 17300578 -179894854 + RLTR13D1 LTR ERVK 1 806 0 4 716 202 347 32 41 chr1 17300971 17301094 -179894338 - MIRc SINE MIR -15 253 132 4 89 713 240 96 25 chr1 17301496 17301693 -179893739 - B3 SINE B2 -1 215 5 4 717 428 330 50 41 chr1 17302350 17302691 -179892741 - Lx9 LINE L1 -187 7457 7114 4 717 236 326 112 0 chr1 17303120 17303209 -179892223 - MER5A1 DNA MER1_type -66 100 2 4 717 35 41 0 0 chr1 17304018 17304067 -179891365 + AT_rich Low_complexity Low_complexity 1 49 0 4 717 316 312 26 35 chr1 17304222 17304338 -179891094 + ID_B1 SINE B4 102 216 -8 4 717 1231 48 0 0 chr1 17304361 17304508 -179890924 + B1_Mus2 SINE Alu 1 147 0 4 717 330 80 0 0 chr1 17304510 17304560 -179890872 + (A)n Simple_repeat Simple_repeat 1 50 0 4 717 235 319 43 14 chr1 17304560 17304630 -179890802 + ID SINE ID 7 78 -146 4 717 375 326 77 8 chr1 17305468 17305598 -179889834 - LTR16A LTR ERVL 0 451 313 4 717 250 333 89 55 chr1 17305657 17305803 -179889629 - LTR16A LTR ERVL -269 182 32 4 717 180 182 0 0 chr1 17306293 17306326 -179889106 - MIRc SINE MIR -148 120 88 4 717 290 289 20 20 chr1 17306606 17306705 -179888727 - MTE2a LTR MaLR 0 359 261 4 717 1311 210 67 3 chr1 17307008 17307323 -179888109 - L1_Mur3 LINE L1 -6759 953 619 4 717 1583 227 43 150 chr1 17307344 17307454 -179887978 - L1_Mur3 LINE L1 -413 5467 5346 4 717 192 40 0 0 chr1 17307454 17307479 -179887953 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 717 312 27 0 0 chr1 17307479 17307515 -179887917 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 717 1583 227 43 150 chr1 17307515 17307601 -179887831 - L1_Mur3 LINE L1 -535 5345 5256 4 717 2693 102 34 3 chr1 17307601 17307985 -179887447 - MTA_Mm LTR MaLR 0 396 1 4 717 1583 227 43 150 chr1 17307985 17308182 -179887250 - L1_Mur3 LINE L1 -625 5255 5096 4 717 4417 149 16 12 chr1 17308182 17308908 -179886524 - Lx3C LINE L1 -2 6974 6246 4 717 1583 227 43 150 chr1 17308908 17309342 -179886090 - L1_Mur3 LINE L1 -785 5095 4727 4 717 1728 242 44 0 chr1 17309387 17309750 -179885682 - Lx6 LINE L1 -168 7292 6914 4 717 330 87 0 0 chr1 17309803 17309849 -179885583 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 717 664 298 51 51 chr1 17309913 17310188 -179885244 - MTE2a LTR MaLR -85 294 50 4 717 280 287 100 31 chr1 17310239 17310442 -179884990 - MTE-int LTR MaLR -13 1567 1339 4 717 845 274 53 64 chr1 17310442 17310801 -179884631 - L1_Rod LINE L1 -3376 2471 2117 4 717 1189 184 9 17 chr1 17310840 17311073 -179884359 - Lx2 LINE L1 -6 6991 6761 4 717 6343 139 26 4 chr1 17311073 17312983 -179882449 - Lx2 LINE L1 -370 6627 4669 4 717 2639 141 12 0 chr1 17312982 17313408 -179882024 - L1VL4 LINE L1 -5687 615 185 4 717 6736 79 13 6 chr1 17314071 17315211 -179880221 - L1_Mus2 LINE L1 -1 6565 5418 4 717 317 62 21 0 chr1 17315281 17315329 -179880103 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 717 779 338 53 43 chr1 17315348 17315629 -179879803 - B4A SINE B4 0 292 9 4 717 26 0 0 0 chr1 17315739 17315765 -179879667 + AT_rich Low_complexity Low_complexity 1 26 0 4 717 438 260 93 64 chr1 17316790 17316930 -179878502 + B1F SINE Alu 1 144 -5 4 717 2706 207 142 6 chr1 17317641 17318338 -179877094 + RMER21A LTR ERV1 51 834 -8 4 717 333 167 69 0 chr1 17318489 17318561 -179876871 - RMER21A LTR ERV1 -820 127 51 4 717 38928 13 0 6 chr1 17318996 17325151 -179870281 - L1Md_A LINE L1 0 6582 468 4 717 805 165 12 0 chr1 17326387 17326551 -179868881 + CT-rich Low_complexity Low_complexity 1 166 0 4 717 945 145 47 0 chr1 17326978 17327150 -179868282 - URR1B DNA MER1_type 0 225 46 4 717 321 26 0 0 chr1 17327308 17327346 -179868086 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 717 342 0 0 0 chr1 17327848 17327886 -179867546 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 717 243 0 0 0 chr1 17328198 17328225 -179867207 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4 717 24 0 0 0 chr1 17328472 17328496 -179866936 + AT_rich Low_complexity Low_complexity 1 24 0 4 717 1334 101 10 0 chr1 17328638 17328845 -179866587 - L1_Mus3 LINE L1 -5 6633 6425 4 717 296 169 0 133 chr1 17329270 17329345 -179866087 - B4 SINE B4 0 292 228 4 717 689 313 6 6 chr1 17329425 17329589 -179865843 - RSINE1 SINE B4 0 165 2 4 717 342 412 67 29 chr1 17329593 17329803 -179865629 - B4 SINE B4 -73 219 2 4 717 389 324 9 0 chr1 17331070 17331178 -179864254 + B1F SINE Alu 22 130 -19 4 717 378 74 0 0 chr1 17331180 17331234 -179864198 + (CAAAC)n Simple_repeat Simple_repeat 4 57 0 4 717 25 90 0 0 chr1 17331300 17331367 -179864065 + AT_rich Low_complexity Low_complexity 1 67 0 4 717 6765 60 3 2 chr1 17332350 17333283 -179862149 - L1_Mus1 LINE L1 0 6567 5647 4 717 19229 119 7 8 chr1 17333280 17336457 -179858975 - L1_Mm LINE L1 -693 5190 2016 4 717 1366 96 0 0 chr1 17336458 17336666 -179858766 + L1_Mm LINE L1 3493 3700 -2183 4 717 3796 51 2 0 chr1 17336667 17337134 -179858298 + L1Md_F2 LINE L1 6101 6568 -14 4 717 7546 148 36 41 chr1 17337144 17339483 -179855949 + Lx3_Mus LINE L1 4658 6988 -21 4 717 387 0 0 0 chr1 17339483 17339526 -179855906 + (TAA)n Simple_repeat Simple_repeat 2 44 0 4 717 528 16 0 0 chr1 17339672 17339733 -179855699 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 717 3804 160 44 7 chr1 17339822 17340572 -179854860 - L1_Mur2 LINE L1 -669 5208 4431 4 717 312 325 82 41 chr1 17341942 17342112 -179853320 + MER5B DNA MER1_type 1 177 -1 4 717 212 178 22 0 chr1 17342139 17342184 -179853248 - B4 SINE B4 -245 47 2 4 717 23 54 0 0 chr1 17342615 17342652 -179852780 + AT_rich Low_complexity Low_complexity 1 37 0 4 717 1559 195 97 0 chr1 17342868 17343176 -179852256 - ORR1D1 LTR MaLR 0 374 37 4 717 203 0 0 36 chr1 17343603 17343631 -179851801 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 717 1846 206 103 19 chr1 17343660 17344145 -179851287 + RLTR11A2 LTR ERVK 2 527 0 4 717 247 261 14 0 chr1 17344235 17344382 -179851050 + GA-rich Low_complexity Low_complexity 1 149 0 4 717 798 67 0 0 chr1 17344409 17344514 -179850918 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 717 277 287 117 87 chr1 17344520 17344623 -179850809 - ID_B1 SINE B4 -25 199 94 4 717 276 0 0 0 chr1 17344667 17344710 -179850722 - Lx2 LINE L1 0 6997 6955 4 717 2775 108 55 11 chr1 17344706 17345176 -179850256 - Lx2 LINE L1 -480 6517 6027 4 717 355 309 187 24 chr1 17345255 17345421 -179850011 + B4A SINE B4 2 194 -98 4 717 411 21 0 0 chr1 17345480 17345528 -179849904 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 717 17316 97 15 8 chr1 17346689 17350080 -179845352 - L1_Mus2 LINE L1 -6 6560 3141 4 717 2297 195 9 38 chr1 17350078 17350897 -179844535 - L1_Mus2 LINE L1 -2425 1489 725 4 717 426 252 25 13 chr1 17350876 17351033 -179844399 - L1_Mus2 LINE L1 -5783 833 675 4 717 636 283 18 138 chr1 17351114 17351504 -179843928 - L1VL1 LINE L1 -6065 357 15 4 717 2982 184 126 4 chr1 17351499 17352278 -179843154 - L1_Mur3 LINE L1 -1443 4437 3564 4 717 241 88 0 0 chr1 17352503 17352537 -179842895 - L1_Mur3 LINE L1 -2346 3534 3501 4 717 249 83 0 0 chr1 17354593 17354629 -179840803 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 717 191 36 36 0 chr1 17354645 17354673 -179840759 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 717 478 228 26 9 chr1 17354673 17354788 -179840644 - B3A SINE B2 -79 119 3 4 717 192 77 0 0 chr1 17356079 17356105 -179839327 + (T)n Simple_repeat Simple_repeat 1 26 0 4 717 918 197 151 74 chr1 17356671 17356966 -179838466 + RLTR20D LTR ERVK 1 321 -247 4 717 252 0 0 0 chr1 17356966 17356994 -179838438 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 717 918 279 120 40 chr1 17356994 17357084 -179838348 + RLTR20D LTR ERVK 322 336 -232 4 717 420 71 0 0 chr1 17357133 17357189 -179838243 + (TCTCCC)n Simple_repeat Simple_repeat 6 61 0 4 717 285 51 0 0 chr1 17357204 17357243 -179838189 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 717 1027 193 122 99 chr1 17357253 17357651 -179837781 - MT2B LTR ERVL -70 531 1 4 717 11041 180 62 45 chr1 17357689 17360549 -179834883 + Lx5 LINE L1 2914 5819 -61 4 717 12692 84 9 0 chr1 17360528 17363064 -179832368 + L1_Mus1 LINE L1 4000 6557 -10 4 717 276 111 0 0 chr1 17363064 17363109 -179832323 + (TAA)n Simple_repeat Simple_repeat 1 45 0 4 717 2025 258 46 9 chr1 17363145 17364049 -179831383 + Lx5 LINE L1 5834 6894 -566 4 717 1240 199 25 40 chr1 17364051 17364329 -179831103 - RLTR46 LTR ERVK -5 315 42 4 717 716 313 56 16 chr1 17364344 17364649 -179830783 + Lx5 LINE L1 7057 7373 -87 4 717 186 43 0 0 chr1 17364689 17364712 -179830720 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 717 1326 142 15 0 chr1 17365282 17365486 -179829946 + Lx2B LINE L1 6657 6863 -137 4 717 327 310 70 17 chr1 17366261 17366376 -179829056 - LTR16A1 LTR ERVL -310 146 26 4 717 2587 30 0 0 chr1 17366807 17367110 -179828322 - L1Md_T LINE L1 0 6582 6280 4 717 291 269 17 61 chr1 17367210 17367325 -179828107 - MTEb LTR MaLR -10 369 260 4 717 185 306 81 0 chr1 17368033 17368095 -179827337 - MIRc SINE MIR -130 138 72 4 717 381 265 22 0 chr1 17369183 17369319 -179826113 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 717 353 92 15 0 chr1 17371376 17371441 -179823991 - L1Md_F2 LINE L1 -1 6581 6516 4 717 311 367 68 18 chr1 17372184 17372406 -179823026 - L2 LINE L2 -1045 2374 2142 4 717 382 266 75 75 chr1 17372633 17372820 -179822612 + B2_Mm2 SINE B2 1 187 -8 4 717 3668 40 0 2 chr1 17372839 17373284 -179822148 - L1Md_F2 LINE L1 -12 6570 6127 4 717 192 40 0 0 chr1 17373364 17373389 -179822043 + (T)n Simple_repeat Simple_repeat 1 25 0 4 717 36223 30 1 1 chr1 17373391 17380240 -179815192 - L1Md_T LINE L1 0 6585 1 4 717 1219 34 7 0 chr1 17380374 17380520 -179814912 + B1_Mus2 SINE Alu 1 147 0 4 717 261 140 0 0 chr1 17380520 17380577 -179814855 + (A)n Simple_repeat Simple_repeat 1 57 0 4 717 1217 87 15 66 chr1 17380586 17380782 -179814650 + B2_Mm2 SINE B2 1 186 -9 4 717 29 90 0 0 chr1 17381200 17381278 -179814154 + AT_rich Low_complexity Low_complexity 1 78 0 4 717 237 163 23 0 chr1 17381737 17381780 -179813652 + MTEa LTR MaLR 1 44 -335 5 717 399 306 14 29 chr1 17381781 17381919 -179813513 + MTEa LTR MaLR 244 379 0 5 717 4016 75 0 13 chr1 17382836 17383379 -179812053 - L1Md_F2 LINE L1 0 6582 6047 5 717 229 384 85 30 chr1 17383935 17384099 -179811333 - MIRb SINE MIR -22 246 74 5 717 212 0 36 0 chr1 17384157 17384185 -179811247 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 717 1142 79 0 0 chr1 17384185 17384325 -179811107 - B1_Mus1 SINE Alu -8 140 1 5 717 317 342 94 0 chr1 17385570 17385719 -179809713 + RSINE1 SINE B4 3 165 0 5 717 22 35 0 0 chr1 17385719 17385748 -179809684 + AT_rich Low_complexity Low_complexity 1 29 0 5 717 29 28 0 0 chr1 17386107 17386143 -179809289 + AT_rich Low_complexity Low_complexity 1 36 0 5 717 1023 124 0 0 chr1 17386230 17386407 -179809025 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 717 295 197 0 16 chr1 17390951 17391013 -179804419 - L1Md_F LINE L1 -5831 688 628 5 717 340 196 35 182 chr1 17391550 17391693 -179803739 + L1VL1 LINE L1 236 357 -6065 5 717 294 248 29 19 chr1 17391767 17391870 -179803562 + L1_Mus1 LINE L1 675 778 -5838 5 717 3412 128 1 9 chr1 17391871 17392954 -179802478 + L1_Mus1 LINE L1 683 1759 -4124 5 717 6540 103 10 13 chr1 17392953 17394388 -179801044 + L1_Mus1 LINE L1 5132 6566 -1 5 717 2199 181 0 7 chr1 17394396 17394829 -179800603 + L1_Mm LINE L1 4732 5161 -722 5 717 2816 229 74 75 chr1 17394827 17395654 -179799778 - Lx5 LINE L1 -7 7043 6218 5 717 411 305 126 21 chr1 17395802 17396237 -179799195 - L1ME2 LINE L1 -216 5948 5468 5 717 335 259 120 0 chr1 17397538 17397646 -179797786 + MLT1I LTR MaLR 31 151 -260 5 717 262 292 42 0 chr1 17397799 17397871 -179797561 + MLT1I LTR MaLR 337 411 0 5 717 5516 206 63 23 chr1 17397967 17399768 -179795664 + Lx5 LINE L1 5168 7042 -8 5 717 274 23 47 0 chr1 17400097 17400140 -179795292 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 717 837 116 20 13 chr1 17400690 17400839 -179794593 - Lx5 LINE L1 -735 6315 6166 5 717 3388 192 11 52 chr1 17400837 17401555 -179793877 + Lx5 LINE L1 6359 7047 -3 5 717 238 365 52 0 chr1 17401773 17401869 -179793563 + LTR78 LTR ERV1 298 398 -906 5 717 181 292 68 14 chr1 17402555 17402628 -179792804 + L2a LINE L2 2830 2906 -513 5 717 233 270 12 86 chr1 17402628 17402709 -179792723 + MER5A1 DNA MER1_type 2 76 -90 5 717 607 275 24 30 chr1 17402710 17402875 -179792557 + RSINE1 SINE B4 2 165 0 5 717 540 145 0 0 chr1 17402886 17403003 -179792429 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 717 323 255 35 70 chr1 17403029 17403143 -179792289 + MER5A1 DNA MER1_type 57 166 0 5 717 308 313 251 25 chr1 17403247 17403562 -179791870 + L2a LINE L2 3033 3418 -8 5 717 423 0 0 0 chr1 17404657 17404704 -179790728 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 717 426 333 0 0 chr1 17404704 17404818 -179790614 - B3A SINE B2 -44 154 41 5 717 1943 183 78 0 chr1 17404906 17405277 -179790155 + MTC LTR MaLR 1 400 -21 5 717 240 192 19 37 chr1 17405244 17405298 -179790134 + ORR1B1 LTR MaLR 342 394 0 5 717 310 305 49 0 chr1 17405574 17405656 -179789776 + RSINE1 SINE B4 48 133 -32 5 717 297 0 0 0 chr1 17405666 17405699 -179789733 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 717 22 70 0 0 chr1 17405704 17405747 -179789685 + AT_rich Low_complexity Low_complexity 1 43 0 5 717 285 43 0 61 chr1 17406805 17406854 -179788578 + B1_Mus2 SINE Alu 102 147 0 5 717 185 241 83 33 chr1 17407112 17407172 -179788260 + L2 LINE L2 494 556 -2863 5 717 26 0 0 0 chr1 17407567 17407593 -179787839 + AT_rich Low_complexity Low_complexity 1 26 0 5 717 251 216 42 136 chr1 17407745 17407863 -179787569 + RMER5 LTR ERV1 17 123 -411 5 717 201 129 0 0 chr1 17408021 17408052 -179787380 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 717 408 20 0 0 chr1 17408164 17408213 -179787219 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 5 717 248 0 0 30 chr1 17408534 17408567 -179786865 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 717 1740 249 69 28 chr1 17408802 17409339 -179786093 - Lx6 LINE L1 -301 7159 6601 5 717 182 284 108 81 chr1 17410050 17410161 -179785271 - L4 LINE RTE -495 1534 1421 5 717 23 0 0 0 chr1 17410288 17410311 -179785121 + AT_rich Low_complexity Low_complexity 1 23 0 5 717 344 328 41 8 chr1 17411436 17411559 -179783873 + LTR16A LTR ERVL 38 164 -287 5 717 5122 109 84 7 chr1 17411600 17411948 -179783484 + RMER17D LTR ERVK 1 394 -495 5 717 1005 33 0 0 chr1 17411948 17412069 -179783363 + (TCTCC)n Simple_repeat Simple_repeat 3 123 0 5 717 5122 109 84 7 chr1 17412069 17412117 -179783315 + RMER17D LTR ERVK 395 442 -447 5 717 672 13 0 0 chr1 17412117 17412194 -179783238 + (TTC)n Simple_repeat Simple_repeat 1 77 0 5 717 5122 109 84 7 chr1 17412194 17412619 -179782813 + RMER17D LTR ERVK 443 885 -4 5 717 1910 99 28 22 chr1 17412661 17412981 -179782451 - RLTRETN_Mm LTR ERVK 0 322 1 5 717 183 363 61 61 chr1 17413766 17413898 -179781534 + L2b LINE L2 3033 3164 -211 5 717 265 305 108 44 chr1 17413972 17414130 -179781302 + MLT1B LTR MaLR 3 170 -220 5 717 262 341 15 45 chr1 17414200 17414287 -179781145 + MLT1B LTR MaLR 263 345 -45 5 717 1298 220 172 3 chr1 17414287 17414647 -179780785 - MTC LTR MaLR 0 421 1 5 717 262 341 15 45 chr1 17414647 17414691 -179780741 + MLT1B LTR MaLR 346 390 0 5 717 361 289 32 53 chr1 17414755 17414850 -179780582 - PB1D10 SINE Alu -40 109 17 5 717 1260 211 17 27 chr1 17415126 17415418 -179780014 - RLTR24 LTR ERV1 -74 455 167 5 717 2039 125 19 3 chr1 17415422 17415736 -179779696 - ORR1A2 LTR MaLR -8 319 1 5 717 756 171 14 7 chr1 17415764 17415911 -179779521 - RLTR24 LTR ERV1 -381 148 1 5 717 230 387 66 0 chr1 17416309 17416446 -179778986 - B1F1 SINE Alu -1 148 3 5 717 741 319 11 0 chr1 17416446 17416526 -179778906 - ID SINE ID -141 83 2 5 717 1624 213 164 16 chr1 17416549 17417093 -179778339 - Lx9 LINE L1 -1 7643 7020 5 717 180 0 0 0 chr1 17417112 17417132 -179778300 + (T)n Simple_repeat Simple_repeat 1 20 0 5 717 2642 102 0 5 chr1 17420778 17421171 -179774261 - L1_Mus4 LINE L1 -321 6315 5925 5 717 7696 157 62 0 chr1 17421173 17421447 -179773985 + Lx3_Mus LINE L1 4351 4627 -1256 5 717 483 18 0 0 chr1 17421447 17421503 -179773929 + (CAA)n Simple_repeat Simple_repeat 2 57 0 5 717 7696 159 62 0 chr1 17421503 17422714 -179772718 + Lx3_Mus LINE L1 4628 5929 -1080 5 717 6850 70 17 0 chr1 17423983 17424861 -179770571 + RLTR13B1 LTR ERVK 1 893 0 5 717 32321 103 16 6 chr1 17425190 17431497 -179763935 - L1Md_F2 LINE L1 0 6582 208 5 717 381 43 0 0 chr1 17431718 17431765 -179763667 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 5 717 918 313 36 80 chr1 17431933 17432322 -179763110 + MTE2a LTR MaLR 8 379 0 5 718 348 130 0 0 chr1 17432860 17432914 -179762518 - Lx5 LINE L1 -545 6505 6452 5 718 3739 185 53 4 chr1 17432911 17433804 -179761628 + Lx4B LINE L1 5522 6483 -575 5 718 382 255 50 30 chr1 17434408 17434509 -179760923 + MTE2b LTR MaLR 42 144 -235 5 718 216 135 0 0 chr1 17436303 17436340 -179759092 + (A)n Simple_repeat Simple_repeat 1 37 0 5 718 560 337 42 37 chr1 17436867 17437194 -179758238 - ORR1E LTR MaLR -44 326 1 5 718 567 14 0 0 chr1 17437279 17437348 -179758084 - L1_Mm LINE L1 -1373 4510 4442 5 718 603 75 9 28 chr1 17437348 17437457 -179757975 + L1Md_F2 LINE L1 6465 6571 -11 5 718 1265 190 136 0 chr1 17437580 17437859 -179757573 - Lx4A LINE L1 -2 7056 6740 5 718 4539 137 1 3 chr1 17437864 17438590 -179756842 + Lx4A LINE L1 5985 6709 -349 5 718 202 109 0 52 chr1 17438618 17438676 -179756756 + A-rich Low_complexity Low_complexity 2 56 0 5 718 322 336 9 9 chr1 17441665 17441770 -179753662 - MamRep1879 DNA hAT? -90 126 22 5 718 10506 93 4 10 chr1 17441899 17444200 -179751232 + L1_Mus2 LINE L1 4280 6566 0 5 718 189 0 0 0 chr1 17444477 17444498 -179750934 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 718 8019 35 15 0 chr1 17445070 17446027 -179749405 + L1Md_T LINE L1 5611 6581 -1 5 718 23 0 0 0 chr1 17446306 17446329 -179749103 + AT_rich Low_complexity Low_complexity 1 23 0 5 718 475 217 72 0 chr1 17446392 17446530 -179748902 + Lx5 LINE L1 6896 7043 -7 5 718 345 47 0 0 chr1 17446833 17446876 -179748556 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 718 361 311 88 17 chr1 17447141 17447294 -179748138 + MLT1A0 LTR MaLR 31 195 -213 5 718 547 286 47 81 chr1 17447465 17447762 -179747670 - MLT1J-int LTR MaLR -622 765 479 5 718 7835 93 4 14 chr1 17448117 17449231 -179746201 - Lx3_Mus LINE L1 0 7009 5907 5 718 700 265 59 0 chr1 17449247 17449417 -179746015 - B3A SINE B2 -16 182 3 5 718 248 229 0 0 chr1 17449741 17449802 -179745630 + Lx5 LINE L1 6983 7043 -7 5 718 20338 219 46 20 chr1 17449813 17450528 -179744904 + L1_Mus4 LINE L1 526 1251 -4632 5 718 360 0 0 0 chr1 17450528 17450568 -179744864 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 718 20338 164 81 12 chr1 17450568 17451377 -179744055 + L1_Mus4 LINE L1 1252 2069 -3814 5 718 209 33 33 0 chr1 17451377 17451407 -179744025 + (CAA)n Simple_repeat Simple_repeat 2 32 0 5 718 20338 153 63 14 chr1 17451407 17455677 -179739755 + L1_Mus4 LINE L1 2070 6634 -2 5 718 4240 135 47 24 chr1 17455973 17456733 -179738699 - Lx3C LINE L1 -9 6967 6190 5 718 33713 36 0 0 chr1 17456935 17462574 -179732858 + L1Md_T LINE L1 1 5589 -297 5 718 8771 19 0 0 chr1 17462575 17463570 -179731862 + L1Md_T LINE L1 5591 6585 0 5 718 225 0 0 0 chr1 17463585 17463610 -179731822 + (A)n Simple_repeat Simple_repeat 1 25 0 5 718 36158 15 3 8 chr1 17463619 17469025 -179726407 + L1Md_A LINE L1 208 5586 -297 5 718 8732 18 0 1 chr1 17469025 17470022 -179725410 + L1Md_A LINE L1 5587 6582 0 5 718 882 162 62 6 chr1 17471714 17471875 -179723557 + B2_Mm2 SINE B2 7 176 -19 5 718 1333 288 35 26 chr1 17472237 17472583 -179722849 - ORR1E LTR MaLR -6 353 5 5 718 29 0 0 0 chr1 17472782 17472811 -179722621 + AT_rich Low_complexity Low_complexity 1 29 0 5 718 2847 192 76 33 chr1 17472871 17473753 -179721679 - RMER17B LTR ERVK 0 958 7 5 718 349 338 19 62 chr1 17474246 17474407 -179721025 - MER104 DNA Tc2 -4 177 24 5 718 399 277 77 94 chr1 17475040 17475383 -179720049 - RMER20A LTR ERVK -72 555 236 5 718 355 345 139 28 chr1 17475764 17475979 -179719453 + LTR16B2 LTR ERVL 1 239 -223 5 718 3058 197 74 48 chr1 17476331 17477151 -179718281 + Lx7 LINE L1 6853 7694 -2 5 718 1618 211 78 15 chr1 17478872 17479267 -179716165 + MTC LTR MaLR 1 420 -1 5 718 203 318 66 33 chr1 17479339 17479430 -179716002 - MIR3 SINE MIR -25 183 90 6 718 3821 96 20 16 chr1 17479526 17479780 -179715652 + LTRIS2 LTR ERV1 1 256 -308 6 718 2049 214 138 89 chr1 17479780 17480640 -179714792 + RLTR13D6 LTR ERVK 1 902 0 6 718 3821 96 20 16 chr1 17480640 17480947 -179714485 + LTRIS2 LTR ERV1 257 564 0 6 718 596 252 73 0 chr1 17481337 17481460 -179713972 + B1F SINE Alu 12 143 -6 6 718 607 177 197 19 chr1 17481900 17482113 -179713319 + RMER1C Other Other 1092 1342 0 6 718 474 49 0 0 chr1 17482367 17482428 -179713004 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 718 203 171 0 0 chr1 17483708 17483749 -179711683 + T-rich Low_complexity Low_complexity 3 43 0 6 718 1158 137 15 0 chr1 17484647 17484844 -179710588 - Lx LINE L1 -308 6346 6147 6 718 2023 115 16 3 chr1 17484847 17485161 -179710271 + Lx LINE L1 6335 6652 -2 6 718 1189 69 0 0 chr1 17485602 17485746 -179709686 + B1_Mus1 SINE Alu 1 144 -4 6 718 252 0 0 0 chr1 17485750 17485778 -179709654 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 718 387 0 0 0 chr1 17486082 17486125 -179709307 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 718 26 30 0 0 chr1 17486277 17486310 -179709122 + AT_rich Low_complexity Low_complexity 1 33 0 6 718 29085 86 26 45 chr1 17486310 17492574 -179702858 - Lx3_Mus LINE L1 -8 7001 863 6 718 471 60 0 0 chr1 17493029 17493096 -179702336 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 718 216 0 0 0 chr1 17493868 17493892 -179701540 + (T)n Simple_repeat Simple_repeat 1 24 0 6 718 2535 124 49 16 chr1 17494378 17494804 -179700628 + Lx2 LINE L1 6556 6995 -2 6 718 276 273 0 0 chr1 17496001 17496067 -179699365 - MER82 DNA MER2_type -1 652 587 6 718 263 175 34 34 chr1 17496118 17496177 -179699255 - RMER15 LTR ERVL -91 484 426 6 718 545 176 254 8 chr1 17497137 17497377 -179698055 + L1_Mur2 LINE L1 1014 1312 -5774 6 718 1332 68 223 31 chr1 17497374 17497692 -179697740 - L1_Mus3 LINE L1 -516 6122 5744 6 718 3437 111 28 11 chr1 17497692 17498220 -179697212 + L1_Mus3 LINE L1 6095 6631 -7 6 718 2062 179 29 4 chr1 17498224 17498707 -179696725 + L1_Mur2 LINE L1 1303 1797 -4080 6 718 7695 121 5 11 chr1 17498696 17500000 -179695432 + L1_Mm LINE L1 3122 4417 -1466 6 718 9001 117 3 1 chr1 17500000 17502144 -179693288 + L1_Mus2 LINE L1 4418 6564 -2 1 718 399 92 0 0 chr1 17502927 17502992 -179692440 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2 718 793 201 83 146 chr1 17503456 17503701 -179691731 - Lx7 LINE L1 -1 7695 7454 3 718 1074 147 10 0 chr1 17503701 17503898 -179691534 + Lx2 LINE L1 6791 6989 -8 4 718 793 201 83 146 chr1 17503898 17504014 -179691418 - Lx7 LINE L1 -243 7453 7357 3 718 330 67 0 0 chr1 17504014 17504059 -179691373 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 5 718 237 283 0 0 chr1 17504114 17504227 -179691205 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 718 320 140 0 0 chr1 17504229 17504279 -179691153 - HAL1-3A_ME LINE L1 -846 2012 1963 7 718 239 348 0 22 chr1 17504328 17504434 -179690998 - MIRc SINE MIR -126 150 48 8 718 1147 76 0 0 chr1 17504990 17505135 -179690297 + B1_Mm SINE Alu 1 145 -2 9 718 1237 192 69 40 chr1 17505447 17505547 -179689885 - RLTR20B3 LTR ERVK 0 577 485 1 718 513 58 0 0 chr1 17505547 17505616 -179689816 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 718 1237 173 55 31 chr1 17505616 17505998 -179689434 - RLTR20B3 LTR ERVK -93 484 1 1 718 242 263 0 0 chr1 17506094 17506151 -179689281 + B1_Mus2 SINE Alu 34 90 -57 1 718 263 330 62 88 chr1 17506586 17506626 -179688806 + PB1D10 SINE Alu 8 117 0 1 718 325 260 0 0 chr1 17506626 17506699 -179688733 + ID_B1 SINE B4 152 224 0 1 718 294 342 101 20 chr1 17507151 17507300 -179688132 - MIRb SINE MIR -17 251 91 1 718 4513 169 40 70 chr1 17507564 17508469 -179686963 + RMER19B LTR ERVK 17 894 -8 1 718 805 299 64 112 chr1 17508813 17509189 -179686243 + MTE2b LTR MaLR 3 360 -19 1 718 1380 183 48 0 chr1 17509297 17509548 -179685884 - ORR1B2 LTR MaLR -100 267 5 1 718 344 347 40 16 chr1 17509552 17509678 -179685754 - MER45A DNA Tip100 -49 129 1 1 718 249 222 0 0 chr1 17509835 17509898 -179685534 + T-rich Low_complexity Low_complexity 1 63 0 2 718 1120 230 179 6 chr1 17510545 17510864 -179684568 + RMER1B Other Other 46 419 -647 2 718 985 249 183 37 chr1 17510957 17511770 -179683662 + RMER1A Other Other 60 1061 -5 2 718 340 82 33 0 chr1 17511888 17511949 -179683483 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 718 422 305 39 79 chr1 17512846 17513024 -179682408 + B4A SINE B4 2 172 -120 2 718 299 370 34 7 chr1 17513062 17513209 -179682223 + RSINE1 SINE B4 3 153 -12 2 718 495 248 19 0 chr1 17513282 17513387 -179682045 - PB1D9 SINE Alu -5 115 9 2 718 2152 254 136 66 chr1 17513529 17514268 -179681164 + RMER1A Other Other 45 536 -530 2 718 396 0 0 0 chr1 17514268 17514312 -179681120 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 718 2152 271 72 0 chr1 17514312 17514470 -179680962 + RMER1A Other Other 510 680 -350 2 718 3541 34 6 116 chr1 17514470 17515004 -179680428 - IAPLTR2_Mm LTR ERVK 0 475 1 2 718 6552 35 6 11 chr1 17515006 17515839 -179679593 - IAPEz-int LTR ERVK -2 6479 5651 2 718 2572 64 0 3 chr1 17515832 17516175 -179679257 - IAPEz-int LTR ERVK -4781 1700 1359 2 718 3678 59 2 18 chr1 17516175 17516678 -179678754 - IAPEz-int LTR ERVK -5819 662 168 2 718 226 321 0 0 chr1 17516678 17516731 -179678701 - RLTR27 LTR ERVK -34 275 223 3 718 913 95 112 6 chr1 17516731 17516900 -179678532 - IAPEz-int LTR ERVK -6286 195 9 2 718 3556 39 33 58 chr1 17516901 17517388 -179678044 - IAPLTR2_Mm LTR ERVK 0 475 1 2 718 1072 192 167 3 chr1 17517388 17517670 -179677762 + RMER1B Other Other 738 1065 -1 2 718 238 203 225 75 chr1 17517677 17517757 -179677675 + B4 SINE B4 201 292 0 3 718 509 231 0 6 chr1 17517758 17517932 -179677500 + (CA)n Simple_repeat Simple_repeat 2 174 0 3 718 488 91 11 0 chr1 17517978 17518066 -179677366 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3 718 634 249 45 84 chr1 17518071 17518192 -179677240 + Lx7 LINE L1 7356 7469 -227 3 718 1178 141 5 0 chr1 17518192 17518391 -179677041 - Lx2 LINE L1 -7 6990 6791 3 718 634 249 45 84 chr1 17518391 17518624 -179676808 + Lx7 LINE L1 7470 7696 0 3 718 265 183 11 21 chr1 17519108 17519203 -179676229 + (CCA)n Simple_repeat Simple_repeat 2 95 0 3 718 17095 116 10 6 chr1 17519924 17523488 -179671944 - L1_Mus2 LINE L1 -2 6564 2985 3 718 280 222 89 0 chr1 17523666 17523756 -179671676 - L1MC3 LINE L1 -246 7539 7442 3 718 455 268 47 16 chr1 17523828 17523957 -179671475 - RMER15 LTR ERVL -94 481 349 3 718 743 185 25 31 chr1 17524257 17524419 -179671013 + URR1A DNA MER1_type 66 226 0 4 718 588 294 133 32 chr1 17524431 17525049 -179670383 - L1MC3 LINE L1 -399 7386 6707 3 718 2580 201 134 44 chr1 17526384 17527017 -179668415 - RMER6C LTR ERVK 0 690 1 4 718 268 296 28 14 chr1 17527464 17527536 -179667896 + MER82 DNA MER2_type 29 101 -552 4 718 827 316 66 43 chr1 17527535 17527975 -179667457 + MER82 DNA MER2_type 203 652 -1 4 718 1256 73 34 0 chr1 17528973 17529150 -179666282 + L1_Mus2 LINE L1 6384 6566 0 4 718 4232 39 2 41 chr1 17529584 17530117 -179665315 + LTRIS3 LTR ERV1 1 512 0 4 718 822 265 102 28 chr1 17530582 17530888 -179664544 + ORR1E LTR MaLR 1 379 0 4 718 6844 93 31 11 chr1 17532189 17533179 -179662253 - RLTR13D5 LTR ERVK -13 1010 1 4 718 1800 142 154 17 chr1 17533246 17533411 -179662021 + RMER17C LTR ERVK 1 180 -230 4 718 414 85 0 0 chr1 17533411 17533470 -179661962 + (TCTTG)n Simple_repeat Simple_repeat 3 61 0 4 718 396 0 0 0 chr1 17533471 17533515 -179661917 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 718 1800 142 154 17 chr1 17533515 17533705 -179661727 + RMER17C LTR ERVK 181 407 -3 4 718 220 364 60 60 chr1 17533791 17533990 -179661442 - MIR SINE MIR -6 256 58 5 718 191 224 13 0 chr1 17534048 17534124 -179661308 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 718 4666 124 10 15 chr1 17534488 17535203 -179660229 - Lx LINE L1 -4 6650 5940 5 718 1236 73 0 0 chr1 17535731 17535908 -179659524 + (GGA)n Simple_repeat Simple_repeat 2 178 0 5 718 327 49 0 0 chr1 17535908 17535949 -179659483 + (GAA)n Simple_repeat Simple_repeat 2 42 0 5 718 34 42 0 0 chr1 17536008 17536056 -179659376 + AT_rich Low_complexity Low_complexity 1 48 0 5 718 3379 83 0 2 chr1 17536056 17536502 -179658930 - L1_Mus1 LINE L1 -1 6566 6122 5 718 300 50 0 0 chr1 17536502 17536542 -179658890 - RLTR13D5 LTR ERVK -155 868 829 5 718 307 79 38 38 chr1 17536604 17536683 -179658749 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 5 718 354 213 0 11 chr1 17536918 17537013 -179658419 - Lx9 LINE L1 -33 7611 7518 5 718 951 257 113 31 chr1 17537503 17537955 -179657477 - RMER4B LTR ERVK -9 457 1 6 718 714 310 3 125 chr1 17539079 17539392 -179656040 + B4 SINE B4 4 278 -14 6 718 209 270 0 60 chr1 17539401 17539468 -179655964 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 6 718 3941 87 58 2 chr1 17539923 17540475 -179654957 - L1_Mus3 LINE L1 -7 6631 6049 6 718 3240 84 7 0 chr1 17540475 17541101 -179654331 + L1_Mus3 LINE L1 5417 6045 -521 6 718 28744 106 17 11 chr1 17542567 17548100 -179647332 + L1Md_F2 LINE L1 66 5585 -298 6 718 7325 83 4 2 chr1 17548101 17549083 -179646349 + L1Md_F2 LINE L1 5587 6570 -12 6 718 220 200 0 0 chr1 17549131 17549181 -179646251 + GA-rich Low_complexity Low_complexity 1 50 0 6 718 248 164 15 0 chr1 17549340 17549407 -179646025 + CT-rich Low_complexity Low_complexity 1 68 0 6 718 621 354 91 22 chr1 17549423 17550119 -179645313 - Lx8 LINE L1 -131 7342 6599 6 718 7079 79 5 2 chr1 17550959 17552141 -179643291 - L1_Mus1 LINE L1 -2 6565 5380 6 718 1194 133 0 27 chr1 17552637 17552823 -179642609 - B2_Mm2 SINE B2 -14 181 1 6 718 200 59 29 0 chr1 17554478 17554512 -179640920 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 718 26 0 0 0 chr1 17554602 17554628 -179640804 + AT_rich Low_complexity Low_complexity 1 26 0 7 718 195 129 0 0 chr1 17554827 17554858 -179640574 + (T)n Simple_repeat Simple_repeat 1 31 0 7 718 3755 160 84 102 chr1 17554858 17555818 -179639614 - Lx LINE L1 0 6654 5712 7 718 1880 115 3 0 chr1 17555817 17556103 -179639329 + Lx LINE L1 5461 5747 -136 7 718 320 249 25 179 chr1 17556103 17556224 -179639208 - L1MCa LINE L1 -4764 1744 1640 7 718 408 299 59 7 chr1 17556224 17556359 -179639073 - B1F SINE Alu -5 144 3 7 718 320 249 25 179 chr1 17556359 17556433 -179638999 - L1MCa LINE L1 -4869 1639 1579 7 718 21 95 0 0 chr1 17557160 17557223 -179638209 + AT_rich Low_complexity Low_complexity 1 63 0 7 718 1208 232 96 39 chr1 17557351 17557706 -179637726 + MTE2a LTR MaLR 5 379 0 7 718 679 213 28 0 chr1 17558004 17558145 -179637287 - B1_Mur4 SINE Alu -1 149 5 7 718 21 36 0 0 chr1 17558214 17558242 -179637190 + AT_rich Low_complexity Low_complexity 1 28 0 7 718 330 26 0 0 chr1 17560222 17560261 -179635171 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 718 299 307 42 34 chr1 17561172 17561290 -179634142 - MIRb SINE MIR -48 220 102 8 718 325 194 75 72 chr1 17561821 17561941 -179633491 - RMER16 LTR ERVK -367 166 1 8 718 4034 120 15 13 chr1 17562006 17562605 -179632827 - Lx LINE L1 -269 6385 5786 8 718 1694 146 7 17 chr1 17562605 17562898 -179632534 + Lx LINE L1 6360 6649 -5 8 718 306 0 0 0 chr1 17562899 17562933 -179632499 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 719 642 347 68 14 chr1 17563746 17564038 -179631394 + ORR1E LTR MaLR 48 355 -4 8 719 350 321 0 7 chr1 17564271 17564406 -179631026 + (CA)n Simple_repeat Simple_repeat 1 134 0 8 719 228 221 0 0 chr1 17564431 17564508 -179630924 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 719 13372 190 70 89 chr1 17564821 17565790 -179629642 + L1_Mus1 LINE L1 316 1266 -5368 8 719 222 37 0 0 chr1 17565790 17565817 -179629615 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 719 13372 109 234 93 chr1 17565817 17570392 -179625040 + L1_Mus1 LINE L1 1267 6567 0 8 719 297 75 0 0 chr1 17570450 17570490 -179624942 + (CAA)n Simple_repeat Simple_repeat 3 42 0 8 719 27798 123 8 3 chr1 17570549 17571445 -179623987 - L1_Mus1 LINE L1 -619 5948 5060 9 719 1546 48 0 16 chr1 17571445 17571637 -179623795 + B2_Mm1a SINE B2 3 191 -2 9 719 27798 143 24 7 chr1 17571637 17576218 -179619214 - L1_Mus1 LINE L1 -824 5059 382 9 719 3158 146 14 15 chr1 17576331 17576916 -179618516 - L1_Mur1 LINE L1 -2174 3712 3129 9 719 207 146 0 0 chr1 17576917 17576958 -179618474 + (T)n Simple_repeat Simple_repeat 1 41 0 9 719 8548 117 49 33 chr1 17576972 17579788 -179615644 - Lx3A LINE L1 -116 6865 2637 9 719 257 0 0 29 chr1 17579788 17579822 -179615610 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 9 719 3860 139 48 43 chr1 17579822 17580105 -179615327 - Lx3A LINE L1 -1278 2636 2366 9 719 5623 170 34 0 chr1 17580108 17581132 -179614300 + Lx3C LINE L1 5918 6976 0 9 719 264 167 0 0 chr1 17581132 17581180 -179614252 + (CAA)n Simple_repeat Simple_repeat 1 48 0 9 719 185 243 120 13 chr1 17582178 17582253 -179613179 + L2 LINE L2 2391 2473 -946 9 719 457 306 61 7 chr1 17582618 17582766 -179612666 + RSINE1 SINE B4 4 159 -6 9 719 693 36 0 0 chr1 17583033 17583117 -179612315 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 719 227 330 81 45 chr1 17583451 17583562 -179611870 - L4 LINE RTE -206 1823 1709 1 719 2797 58 0 0 chr1 17584861 17585207 -179610225 + ORR1A1 LTR MaLR 1 346 0 1 719 13683 54 16 1 chr1 17585207 17586972 -179608460 + ORR1A1-int LTR MaLR 1 1792 0 1 719 2630 56 3 0 chr1 17586974 17587314 -179608118 + ORR1A1 LTR MaLR 6 346 0 1 719 594 223 64 64 chr1 17588073 17588235 -179607197 + B3A SINE B2 2 168 -30 1 719 297 0 0 0 chr1 17588235 17588268 -179607164 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 719 536 223 64 64 chr1 17588268 17588292 -179607140 + B2_Mm2 SINE B2 166 188 -7 1 719 250 291 79 35 chr1 17588807 17588921 -179606511 + MLT1F1 LTR MaLR 154 272 -297 1 719 382 365 6 12 chr1 17589158 17589319 -179606113 - MER5A1 DNA MER1_type -1 165 6 1 719 199 191 29 87 chr1 17590774 17590843 -179604589 + MIR SINE MIR 20 84 -124 1 719 302 0 26 0 chr1 17593288 17593326 -179602106 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 719 214 377 35 21 chr1 17594003 17594144 -179601288 + MIR SINE MIR 114 256 -6 1 719 185 360 59 10 chr1 17594418 17594519 -179600913 + MIRb SINE MIR 36 141 -127 1 719 222 362 21 14 chr1 17594723 17594866 -179600566 - MIRb SINE MIR -14 254 111 1 719 259 286 29 0 chr1 17595239 17595309 -179600123 - L2a LINE L2 -21 3405 3334 1 719 208 211 0 0 chr1 17597660 17597698 -179597734 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 719 703 159 0 0 chr1 17597702 17597809 -179597623 - B1_Mus2 SINE Alu -7 140 34 1 719 289 403 47 36 chr1 17598516 17598709 -179596723 - L2 LINE L2 -556 2863 2669 1 719 7396 77 33 14 chr1 17599110 17600148 -179595284 - Lx3_Mus LINE L1 -302 6707 5650 1 719 1779 110 60 0 chr1 17600148 17600430 -179595002 + Lx3_Mus LINE L1 6710 7008 -1 1 719 2521 55 65 0 chr1 17600468 17600793 -179594639 + ORR1A1 LTR MaLR 1 346 0 1 719 13216 62 23 3 chr1 17600793 17602551 -179592881 + ORR1A1-int LTR MaLR 1 1792 0 1 719 2399 50 66 0 chr1 17602551 17602868 -179592564 + ORR1A1 LTR MaLR 1 338 -8 1 719 180 200 0 0 chr1 17604245 17604285 -179591147 + (CAGTA)n Simple_repeat Simple_repeat 1 40 0 1 719 28 48 0 0 chr1 17604370 17604412 -179591020 + AT_rich Low_complexity Low_complexity 1 42 0 1 719 1235 40 0 0 chr1 17604938 17605086 -179590346 - B1_Mus1 SINE Alu 0 148 1 1 719 24 77 0 0 chr1 17605167 17605219 -179590213 + AT_rich Low_complexity Low_complexity 1 52 0 1 719 205 88 29 0 chr1 17607298 17607332 -179588100 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 719 24 32 0 0 chr1 17607692 17607723 -179587709 + AT_rich Low_complexity Low_complexity 1 31 0 1 719 25 51 0 0 chr1 17607944 17607983 -179587449 + AT_rich Low_complexity Low_complexity 1 39 0 1 719 605 305 42 106 chr1 17608776 17609040 -179586392 + B4 SINE B4 40 286 -6 1 719 459 73 0 0 chr1 17609071 17609139 -179586293 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 719 4731 49 2 3 chr1 17610058 17610648 -179584784 + L1Md_F2 LINE L1 5994 6582 0 1 719 243 125 0 0 chr1 17613318 17613358 -179582074 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1 719 22 70 0 0 chr1 17613479 17613522 -179581910 + AT_rich Low_complexity Low_complexity 1 43 0 1 719 399 331 67 8 chr1 17614368 17614502 -179580930 - Lx8 LINE L1 -225 7248 7107 1 719 324 0 0 0 chr1 17615096 17615132 -179580300 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 719 5755 74 16 4 chr1 17615846 17616616 -179578816 - L1_Mus4 LINE L1 -7 6629 5851 1 719 879 246 66 25 chr1 17616773 17617015 -179578417 - ORR1C2 LTR MaLR 0 384 133 1 719 23 0 0 0 chr1 17617032 17617055 -179578377 + AT_rich Low_complexity Low_complexity 1 23 0 1 719 541 305 31 0 chr1 17617514 17617642 -179577790 - ID_B1 SINE B4 0 224 93 1 719 378 0 0 0 chr1 17619201 17619243 -179576189 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 719 579 15 0 0 chr1 17619675 17619743 -179575689 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 719 270 0 0 0 chr1 17619743 17619772 -179575660 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 719 21 57 0 0 chr1 17621695 17621730 -179573702 + AT_rich Low_complexity Low_complexity 1 35 0 1 719 3677 197 86 42 chr1 17621906 17622776 -179572656 - RMER13B LTR ERVK 0 908 1 1 719 348 310 103 0 chr1 17623293 17623438 -179571994 - Lx8 LINE L1 -652 6821 6662 1 719 662 241 154 27 chr1 17623439 17623699 -179571733 + Lx8 LINE L1 7181 7473 0 1 719 2285 152 21 0 chr1 17623874 17624255 -179571177 + Lx LINE L1 5198 5586 -297 1 719 3827 143 8 61 chr1 17624286 17625062 -179570370 - RMER17A LTR ERVK -16 735 1 1 719 6763 104 44 3 chr1 17625064 17626066 -179569366 + Lx LINE L1 5587 6629 -25 1 719 1673 199 15 8 chr1 17626077 17626541 -179568891 - L1_Mur1 LINE L1 -5546 1086 672 1 719 25 65 0 0 chr1 17626785 17626831 -179568601 + AT_rich Low_complexity Low_complexity 1 46 0 1 719 228 111 0 0 chr1 17626997 17627033 -179568399 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 719 3247 183 49 21 chr1 17627035 17627706 -179567726 - Lx4B LINE L1 -10 7048 6359 1 719 2620 164 98 0 chr1 17628010 17628478 -179566954 + Lx2B LINE L1 6319 6832 -168 1 719 441 0 0 0 chr1 17629723 17629772 -179565660 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 719 1711 245 63 5 chr1 17630145 17630543 -179564889 - MTC LTR MaLR 0 421 1 1 719 364 226 24 12 chr1 17630543 17630628 -179564804 - MTC-int LTR MaLR 0 1258 1173 1 719 1721 171 30 50 chr1 17630628 17631027 -179564405 - L1_Mur2 LINE L1 -2456 3421 3031 1 719 1208 91 0 6 chr1 17631151 17631328 -179564104 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1 719 1859 92 78 0 chr1 17631330 17631601 -179563831 - L1_Mus2 LINE L1 -3 6563 6272 1 719 5055 80 24 2 chr1 17631601 17632363 -179563069 + L1_Mus2 LINE L1 5511 6289 -277 1 719 1684 164 52 86 chr1 17632363 17632771 -179562661 - MTC-int LTR MaLR -864 394 1 1 719 639 275 37 47 chr1 17632771 17632962 -179562470 - MTC LTR MaLR 0 419 231 1 719 689 307 77 50 chr1 17633051 17633390 -179562042 - MTEa LTR MaLR -31 348 1 1 719 5842 91 23 53 chr1 17634565 17635519 -179559913 - Lx3_Mus LINE L1 0 7009 6085 1 719 4750 111 43 27 chr1 17635510 17636157 -179559275 + Lx3A LINE L1 6180 6841 -140 1 719 1189 48 0 0 chr1 17636157 17636304 -179559128 + B1_Mm SINE Alu 1 147 0 1 719 4750 111 43 27 chr1 17636304 17636423 -179559009 + Lx3A LINE L1 6842 6965 -16 1 719 225 0 0 0 chr1 17636423 17636448 -179558984 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 719 4750 111 43 27 chr1 17636448 17636467 -179558965 + Lx3A LINE L1 6966 6978 -3 1 719 27 62 0 0 chr1 17636754 17636802 -179558630 + AT_rich Low_complexity Low_complexity 1 48 0 1 719 3813 90 11 5 chr1 17637110 17637678 -179557754 - L1_Mur1 LINE L1 -1214 4672 4102 1 719 1726 221 23 10 chr1 17637687 17638103 -179557329 + L1_Mur1 LINE L1 31 612 -6370 1 719 310 227 0 13 chr1 17638077 17638153 -179557279 + Lx2 LINE L1 6575 6649 -348 1 719 421 245 112 51 chr1 17638140 17638355 -179557077 + Lx2 LINE L1 6764 6991 -6 1 719 195 157 0 0 chr1 17638536 17638587 -179556845 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1 719 368 185 24 47 chr1 17638679 17638764 -179556668 - RMER12 LTR ERVK -282 1040 958 1 719 1093 311 89 89 chr1 17638732 17639243 -179556189 - RMER12 LTR ERVK -192 1212 425 1 719 918 92 0 0 chr1 17639243 17639373 -179556059 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 1 719 1606 191 32 80 chr1 17639373 17639764 -179555668 - RMER12 LTR ERVK -1424 424 1 1 719 384 22 0 0 chr1 17639786 17639831 -179555601 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 719 24 32 0 0 chr1 17640671 17640702 -179554730 + AT_rich Low_complexity Low_complexity 1 31 0 1 719 216 351 0 0 chr1 17641212 17641289 -179554143 + CT-rich Low_complexity Low_complexity 4 80 0 1 719 695 309 34 58 chr1 17641388 17641680 -179553752 + B4 SINE B4 4 288 -4 1 719 244 246 0 58 chr1 17642192 17642261 -179553171 - MTEb LTR MaLR -9 370 306 1 719 729 175 34 8 chr1 17642348 17642612 -179552820 + GA-rich Low_complexity Low_complexity 1 270 0 1 719 275 250 0 0 chr1 17642702 17642766 -179552666 + CT-rich Low_complexity Low_complexity 1 64 0 1 719 238 284 10 102 chr1 17642768 17642866 -179552566 - MTEa LTR MaLR -289 90 2 1 719 369 0 0 0 chr1 17643414 17643455 -179551977 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 719 492 18 0 0 chr1 17643455 17643511 -179551921 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 719 4232 162 80 85 chr1 17643512 17644545 -179550887 + RLTR25B LTR ERVK 1 1028 0 1 719 464 246 48 63 chr1 17644658 17644784 -179550648 - B4 SINE B4 -157 135 12 1 719 1301 275 60 45 chr1 17644810 17645405 -179550027 - Lx9 LINE L1 -2 7642 7039 1 719 216 0 0 0 chr1 17645637 17645661 -179549771 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 719 387 0 0 0 chr1 17645661 17645704 -179549728 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 719 296 24 24 0 chr1 17646431 17646472 -179548960 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 719 315 0 0 0 chr1 17646800 17646835 -179548597 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 719 720 259 123 33 chr1 17648370 17648614 -179546818 + MLT1A0 LTR MaLR 20 285 -80 1 719 8884 127 40 5 chr1 17649988 17651583 -179543849 + Lx2A LINE L1 5360 7008 0 1 719 1273 34 0 27 chr1 17651779 17651963 -179543469 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 719 204 154 26 0 chr1 17651964 17652003 -179543429 + CT-rich Low_complexity Low_complexity 3 42 0 1 719 307 280 108 20 chr1 17652625 17652727 -179542705 + Tigger7 DNA MER2_type 285 395 -2096 1 719 3316 28 13 0 chr1 17652976 17653367 -179542065 - MTA_Mm LTR MaLR 0 396 1 1 719 246 230 122 0 chr1 17654888 17654962 -179540470 - ID4_ SINE ID 0 83 1 1 719 192 125 0 0 chr1 17655480 17655512 -179539920 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 1 719 1309 158 146 40 chr1 17656757 17657127 -179538305 + RLTR9E LTR ERVK 1 409 0 1 719 702 0 0 0 chr1 17658169 17658247 -179537185 + (GAA)n Simple_repeat Simple_repeat 1 78 0 1 719 236 246 0 0 chr1 17658351 17658408 -179537024 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 719 1816 113 12 62 chr1 17658573 17658912 -179536520 - RLTRETN_Mm LTR ERVK 0 322 1 1 719 8539 118 9 22 chr1 17658912 17660292 -179535140 - MMETn-int LTR ERVK 0 4844 3483 1 719 23279 55 20 27 chr1 17660322 17663482 -179531950 - MMETn-int LTR ERVK -1703 3141 2 1 719 1774 129 12 62 chr1 17663483 17663822 -179531610 - RLTRETN_Mm LTR ERVK 0 322 1 1 719 8466 33 4 0 chr1 17664151 17665199 -179530233 - L1Md_F2 LINE L1 -2 6580 5505 1 719 575 280 45 17 chr1 17665217 17665395 -179530037 + B3A SINE B2 2 184 -14 1 719 493 309 22 49 chr1 17665460 17665644 -179529788 + B3A SINE B2 4 182 -16 1 719 204 233 0 0 chr1 17665683 17665756 -179529676 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 719 568 346 11 11 chr1 17667011 17667198 -179528234 + B4A SINE B4 1 187 -105 2 719 450 262 149 32 chr1 17667517 17667617 -179527815 + Lx8 LINE L1 7227 7328 -145 2 719 192 77 0 0 chr1 17667617 17667643 -179527789 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 719 450 262 149 32 chr1 17667643 17667763 -179527669 + Lx8 LINE L1 7329 7473 0 2 719 1704 171 40 6 chr1 17668328 17668657 -179526775 - L1_Mur2 LINE L1 -427 5450 5111 2 719 1452 170 128 28 chr1 17668657 17668984 -179526448 + RLTR9A LTR ERVK 1 360 -8 2 719 233 98 24 0 chr1 17669316 17669357 -179526075 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 2 719 2013 169 70 98 chr1 17669392 17669922 -179525510 + RLTR45-int LTR ERVK 2074 2588 -4656 2 719 38956 36 2 6 chr1 17669930 17676280 -179519152 - L1Md_T LINE L1 0 6582 261 2 719 10886 160 25 56 chr1 17676286 17677646 -179517786 + ETnERV2-int LTR ERVK 1571 2889 -4517 2 719 189 0 0 0 chr1 17677646 17677667 -179517765 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 719 10886 160 25 56 chr1 17677667 17678571 -179516861 + ETnERV2-int LTR ERVK 2890 3765 -3641 2 719 2115 139 14 22 chr1 17678572 17678932 -179516500 + Lx2 LINE L1 6363 6719 -278 2 719 781 157 13 0 chr1 17678937 17679090 -179516342 + Lx2 LINE L1 6843 6997 0 2 719 21440 123 14 2 chr1 17679257 17680454 -179514978 - L1VL4 LINE L1 -1176 4707 3490 2 719 309 51 0 0 chr1 17680454 17680493 -179514939 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 719 21440 153 15 48 chr1 17680493 17683696 -179511736 - L1VL4 LINE L1 -2394 3489 420 2 719 348 276 75 8 chr1 17684197 17684416 -179511016 - L1ME2z LINE L1 -218 5946 5704 2 719 223 333 0 0 chr1 17684915 17684984 -179510448 + CT-rich Low_complexity Low_complexity 6 74 0 2 719 602 278 59 20 chr1 17685092 17685294 -179510138 + B3 SINE B2 1 210 -6 2 719 884 324 60 9 chr1 17685819 17686155 -179509277 + RCHARR1 DNA MER1_type 13 365 -609 2 719 22 70 0 0 chr1 17686333 17686376 -179509056 + AT_rich Low_complexity Low_complexity 1 43 0 2 719 23 33 0 0 chr1 17686934 17686964 -179508468 + AT_rich Low_complexity Low_complexity 1 30 0 2 719 443 256 90 8 chr1 17687292 17687414 -179508018 + ID_B1 SINE B4 93 224 0 2 719 29 0 0 0 chr1 17687486 17687515 -179507917 + AT_rich Low_complexity Low_complexity 1 29 0 2 719 288 0 0 0 chr1 17688634 17688666 -179506766 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 719 369 0 0 0 chr1 17688763 17688804 -179506628 + (A)n Simple_repeat Simple_repeat 1 41 0 2 719 620 141 0 60 chr1 17688846 17689009 -179506423 - L1_Mm LINE L1 -1147 4736 4601 2 89 41185 5 0 0 chr1 17689026 17695608 -179499824 - L1Md_A LINE L1 0 6582 1 2 720 4320 107 5 0 chr1 17695613 17696241 -179499191 - L1_Mm LINE L1 -1268 4615 3985 2 720 3287 130 6 2 chr1 17696241 17696750 -179498682 + L1_Mus3 LINE L1 6127 6637 -1 2 720 1036 103 33 39 chr1 17697225 17697406 -179498026 + L1_Mus3 LINE L1 6452 6631 -7 2 720 375 299 26 71 chr1 17698192 17698347 -179497085 - RMER15 LTR ERVL -3 572 425 2 720 255 61 0 0 chr1 17698623 17698656 -179496776 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 2 720 612 127 8 17 chr1 17698656 17698776 -179496656 + Lx LINE L1 6536 6654 0 2 720 318 306 158 22 chr1 17698777 17699031 -179496401 + L1MA6 LINE L1 5754 6043 -248 2 720 189 74 0 0 chr1 17699031 17699058 -179496374 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 2 720 388 286 110 2 chr1 17699058 17699251 -179496181 + L1MA6 LINE L1 6044 6261 -30 2 720 38 22 0 0 chr1 17699264 17699309 -179496123 + AT_rich Low_complexity Low_complexity 1 45 0 2 720 435 38 0 0 chr1 17699708 17699761 -179495671 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 720 227 266 122 29 chr1 17700836 17701041 -179494391 + Arthur1 DNA Tip100 3575 3798 -149 2 720 185 301 50 50 chr1 17701729 17701848 -179493584 - MIRm SINE MIR -148 128 10 2 720 3159 32 42 0 chr1 17701865 17702245 -179493187 - MTA_Mm LTR MaLR 0 396 1 2 720 3153 67 51 2 chr1 17702245 17702680 -179492752 - MTA_Mm-int LTR MaLR 0 1098 643 2 720 2790 68 0 0 chr1 17702678 17703031 -179492401 + MTA_Mm LTR MaLR 44 396 0 2 720 1098 57 16 33 chr1 17703263 17703446 -179491986 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 720 726 119 25 37 chr1 17703446 17703693 -179491739 + CT-rich Low_complexity Low_complexity 1 243 0 2 720 22 35 0 0 chr1 17704174 17704203 -179491229 + AT_rich Low_complexity Low_complexity 1 29 0 2 720 259 336 27 9 chr1 17704415 17704526 -179490906 + PB1D10 SINE Alu 3 115 -2 2 720 185 178 0 22 chr1 17704715 17704761 -179490671 + (CATA)n Simple_repeat Simple_repeat 4 48 0 2 720 405 0 0 0 chr1 17704783 17704828 -179490604 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 720 5723 25 0 7 chr1 17705507 17706182 -179489250 - L1Md_F2 LINE L1 -2 6580 5911 2 720 30 93 0 0 chr1 17706195 17706281 -179489151 + AT_rich Low_complexity Low_complexity 1 86 0 2 720 1064 264 25 11 chr1 17707191 17707467 -179487965 - B4A SINE B4 -12 280 1 2 720 32 86 0 0 chr1 17708451 17708532 -179486900 + AT_rich Low_complexity Low_complexity 1 81 0 2 720 232 307 52 91 chr1 17709744 17709898 -179485534 - MLT1H2 LTR MaLR -270 219 72 2 720 557 335 90 16 chr1 17710098 17710286 -179485146 + B4A SINE B4 1 202 -90 2 720 276 30 0 0 chr1 17710286 17710319 -179485113 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 720 424 328 14 94 chr1 17710365 17710577 -179484855 + B3A SINE B2 2 196 -2 2 720 250 279 0 0 chr1 17710649 17710710 -179484722 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 720 280 296 0 12 chr1 17711252 17711334 -179484098 + CT-rich Low_complexity Low_complexity 4 84 0 2 720 519 240 0 0 chr1 17711413 17711509 -179483923 - B4A SINE B4 -79 213 118 2 720 495 33 0 0 chr1 17711816 17711877 -179483555 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 720 5733 53 0 7 chr1 17712017 17712753 -179482679 + L1Md_F3 LINE L1 5854 6584 0 2 720 632 325 46 89 chr1 17713659 17714007 -179481425 + ORR1E LTR MaLR 27 359 0 2 720 518 335 39 0 chr1 17714783 17714962 -179480470 + B3A SINE B2 2 187 -11 2 720 235 260 49 61 chr1 17714962 17715044 -179480388 + B3 SINE B2 135 215 -1 2 720 267 241 76 54 chr1 17715349 17715441 -179479991 - MLT1L LTR MaLR -2 608 515 2 720 252 266 171 39 chr1 17719333 17719462 -179475970 - RSINE1 SINE B4 -18 147 2 2 720 581 343 20 62 chr1 17720622 17720927 -179474505 - B4A SINE B4 0 292 1 2 720 233 376 80 31 chr1 17722935 17723097 -179472335 + L2b LINE L2 2982 3151 -224 2 720 1553 108 35 0 chr1 17723369 17723628 -179471804 - L1_Mur2 LINE L1 -5751 961 694 2 720 903 167 0 0 chr1 17723629 17723791 -179471641 - Lx2 LINE L1 0 6997 6836 2 720 750 137 129 8 chr1 17724409 17724541 -179470891 + B1_Mur4 SINE Alu 2 149 -1 2 720 1101 148 113 0 chr1 17725218 17725421 -179470011 - URR1A DNA MER1_type 0 226 1 2 720 987 72 22 7 chr1 17726198 17726337 -179469095 + B1_Mm SINE Alu 1 141 -6 2 720 537 16 0 0 chr1 17727330 17727392 -179468040 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 720 244 301 12 12 chr1 17727587 17727671 -179467761 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 2 720 3732 136 22 45 chr1 17728025 17728779 -179466653 - RMER17A LTR ERVK -14 737 1 2 720 470 333 58 79 chr1 17728993 17729371 -179466061 + ORR1D2 LTR MaLR 1 370 0 2 720 354 175 0 0 chr1 17729644 17729724 -179465708 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 720 568 228 53 30 chr1 17729724 17729855 -179465577 - B4A SINE B4 0 292 159 2 720 29 0 0 0 chr1 17731556 17731585 -179463847 + AT_rich Low_complexity Low_complexity 1 29 0 2 720 544 240 7 7 chr1 17731744 17731899 -179463533 - Lx9 LINE L1 -6 7638 7484 2 720 360 79 0 0 chr1 17732556 17732619 -179462813 + L1_Mus3 LINE L1 6576 6638 0 2 720 28 79 0 0 chr1 17733152 17733215 -179462217 + AT_rich Low_complexity Low_complexity 1 63 0 2 720 229 217 0 0 chr1 17733554 17733600 -179461832 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 2 720 426 179 0 0 chr1 17733636 17733731 -179461701 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 720 773 291 51 0 chr1 17738337 17738533 -179456899 + ID_B1 SINE B4 11 216 -8 2 720 432 55 0 0 chr1 17739346 17739401 -179456031 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 720 788 168 0 28 chr1 17739830 17739971 -179455461 + B1_Mus2 SINE Alu 11 147 0 2 720 1303 34 22 29 chr1 17739975 17740246 -179455186 + (GAAA)n Simple_repeat Simple_repeat 1 269 0 2 720 820 281 5 0 chr1 17741177 17741387 -179454045 + B3 SINE B2 2 212 -4 2 720 661 216 82 0 chr1 17741898 17742032 -179453400 + B1_Mur2 SINE Alu 3 147 -2 2 720 568 323 120 29 chr1 17743405 17743679 -179451753 - MLT1A LTR MaLR 0 374 76 2 720 204 242 90 15 chr1 17745011 17745078 -179450354 - L2 LINE L2 -337 3082 3011 2 720 306 50 0 0 chr1 17745434 17745474 -179449958 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 720 237 352 101 18 chr1 17745485 17745763 -179449669 - L2 LINE L2 -861 2558 2258 2 720 1523 47 16 0 chr1 17746097 17746287 -179449145 + B2_Mm1t SINE B2 1 193 0 2 720 23 33 0 0 chr1 17746548 17746578 -179448854 + AT_rich Low_complexity Low_complexity 1 30 0 2 720 7307 107 21 10 chr1 17746664 17748489 -179446943 - L1_Mus3 LINE L1 -1 6637 4785 2 720 2542 87 22 0 chr1 17750462 17750820 -179444612 - L1_Mus1 LINE L1 -1 6566 6201 2 720 1830 74 37 0 chr1 17750820 17751064 -179444368 + L1Md_F2 LINE L1 5980 6232 -350 2 720 35 41 0 0 chr1 17752913 17752962 -179442470 + AT_rich Low_complexity Low_complexity 1 49 0 2 720 243 140 0 0 chr1 17753484 17753534 -179441898 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 720 381 43 0 0 chr1 17753534 17753581 -179441851 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 720 477 0 0 0 chr1 17754982 17755035 -179440397 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 720 250 389 43 0 chr1 17756567 17756775 -179438657 + Lx8 LINE L1 6969 7185 -288 2 720 279 236 288 16 chr1 17756777 17756902 -179438530 - MTD LTR MaLR -2 419 261 3 720 604 333 0 0 chr1 17756917 17757079 -179438353 - MTD LTR MaLR -257 162 1 3 720 3386 289 66 33 chr1 17757782 17759052 -179436380 - Lx8 LINE L1 -1 7472 6173 3 720 378 0 0 0 chr1 17759052 17759094 -179436338 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 720 3386 289 66 33 chr1 17759094 17759191 -179436241 - Lx8 LINE L1 -1301 6172 6062 3 720 1172 68 0 7 chr1 17759802 17759951 -179435481 + B1_Mus1 SINE Alu 1 148 0 3 720 244 45 21 43 chr1 17759951 17759998 -179435434 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 3 720 465 103 0 0 chr1 17760158 17760226 -179435206 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 720 358 345 106 29 chr1 17761073 17761318 -179434114 - MLT1C LTR MaLR -30 437 174 3 720 422 246 226 6 chr1 17761435 17761603 -179433829 - MTD LTR MaLR -53 366 162 3 720 390 271 8 92 chr1 17761614 17761744 -179433688 - MTD LTR MaLR -288 131 13 3 720 982 140 6 6 chr1 17761753 17761933 -179433499 + GA-rich Low_complexity Low_complexity 1 180 0 3 720 596 129 10 0 chr1 17761933 17762034 -179433398 + (GGGA)n Simple_repeat Simple_repeat 1 102 0 3 720 12493 93 23 10 chr1 17762045 17764631 -179430801 - L1VL4 LINE L1 -726 2833 216 3 720 592 256 88 0 chr1 17764631 17764791 -179430641 - MLT1C LTR MaLR -280 187 14 3 720 3305 62 5 0 chr1 17764965 17765388 -179430044 - L1_Mus2 LINE L1 -510 6057 5633 3 720 4295 74 2 0 chr1 17765388 17765941 -179429491 + L1_Mus2 LINE L1 6013 6566 0 3 720 1036 275 96 66 chr1 17766031 17766499 -179428933 - RLTR17 LTR ERVK -96 596 115 3 720 351 348 79 22 chr1 17766604 17766833 -179428599 - L1ME1 LINE L1 -334 5845 5604 3 720 416 258 198 40 chr1 17766979 17767452 -179427980 - L1ME1 LINE L1 -760 5424 4809 3 720 336 286 60 8 chr1 17767490 17767624 -179427808 - MER33 DNA MER1_type -6 318 178 3 720 274 270 105 55 chr1 17767906 17768106 -179427326 - L1ME1 LINE L1 -201 5978 5769 3 720 1803 126 86 3 chr1 17768165 17768467 -179426965 + ORR1A2 LTR MaLR 1 327 0 3 720 405 0 0 0 chr1 17768473 17768518 -179426914 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 720 2396 198 28 12 chr1 17768805 17769307 -179426125 - Lx4B LINE L1 -8 7050 6541 3 720 1423 191 101 0 chr1 17769294 17769571 -179425861 - Lx5 LINE L1 -551 6499 6195 3 720 1793 189 78 0 chr1 17769581 17770073 -179425359 + L1_Mur2 LINE L1 2774 3378 -2505 3 720 29451 132 18 12 chr1 17770171 17776330 -179419102 - L1_Mus2 LINE L1 0 6566 370 3 720 21 0 0 0 chr1 17777165 17777186 -179418246 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 261 159 0 0 chr1 17777313 17777376 -179418056 + A-rich Low_complexity Low_complexity 1 63 0 3 720 260 200 0 14 chr1 17777700 17777771 -179417661 + CT-rich Low_complexity Low_complexity 2 71 0 3 720 225 83 0 0 chr1 17778128 17778164 -179417268 + (T)n Simple_repeat Simple_repeat 1 36 0 3 720 1699 16 0 0 chr1 17778402 17778593 -179416839 - B2_Mm1a SINE B2 -2 191 1 3 720 4019 201 61 12 chr1 17779209 17780029 -179415403 - RMER13A LTR ERVK 0 860 1 3 720 801 216 62 39 chr1 17780616 17780673 -179414759 - Lx9 LINE L1 -6 7638 7589 3 720 1186 151 93 0 chr1 17780673 17780878 -179414554 - URR1B DNA MER1_type 0 225 2 3 720 801 216 62 39 chr1 17780878 17781080 -179414352 - Lx9 LINE L1 -56 7588 7373 3 720 2565 158 14 2 chr1 17781599 17782023 -179413409 - Lx3B LINE L1 -31 6942 6514 3 720 1882 165 117 0 chr1 17782196 17782547 -179412885 + ORR1B1 LTR MaLR 1 392 -2 3 720 230 0 33 0 chr1 17782791 17782821 -179412611 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 720 2371 52 63 21 chr1 17782895 17783050 -179412382 + ORR1A1 LTR MaLR 1 175 -171 3 720 1712 134 103 142 chr1 17783050 17783544 -179411888 - IAPLTR2_Mm LTR ERVK 0 475 1 3 720 2371 52 63 21 chr1 17783544 17783720 -179411712 + ORR1A1 LTR MaLR 176 346 0 3 720 226 207 103 0 chr1 17783720 17783807 -179411625 + Lx9 LINE L1 7547 7642 -2 3 720 22 35 0 0 chr1 17784108 17784137 -179411295 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 287 318 91 30 chr1 17784392 17784622 -179410810 + RLTR42-int LTR ERVK 1156 1399 -4123 3 720 1167 93 38 8 chr1 17785169 17785543 -179409889 + (TCTA)n Simple_repeat Simple_repeat 1 385 0 3 720 591 185 13 7 chr1 17785544 17785696 -179409736 + CT-rich Low_complexity Low_complexity 2 154 0 3 720 1639 39 5 0 chr1 17785990 17786196 -179409236 + L1Md_F2 LINE L1 6364 6570 -12 3 720 778 319 43 11 chr1 17786526 17786802 -179408630 + B4A SINE B4 2 286 -6 3 720 6312 118 19 13 chr1 17786944 17789652 -179405780 + Lx LINE L1 431 1899 -2015 3 720 5161 125 140 5 chr1 17789653 17790641 -179404791 + L1Md_F2 LINE L1 2088 3208 -2678 3 720 3868 95 63 9 chr1 17790632 17791103 -179404329 + L1Md_F2 LINE L1 5303 5805 -81 3 720 306 50 0 0 chr1 17791103 17791143 -179404289 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 720 3868 187 59 36 chr1 17791143 17791905 -179403527 + L1Md_F2 LINE L1 5804 6578 -4 3 720 4526 158 41 9 chr1 17791905 17792714 -179402718 + Lx3B LINE L1 6133 6967 -6 3 720 207 0 0 0 chr1 17792911 17792934 -179402498 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 720 22 0 0 0 chr1 17793307 17793329 -179402103 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 702 91 0 8 chr1 17793530 17793652 -179401780 - L1_Mus4 LINE L1 0 6636 6516 3 720 1494 324 63 29 chr1 17793696 17794389 -179401043 - Lx8 LINE L1 -181 7292 6576 3 720 304 343 55 9 chr1 17794389 17794498 -179400934 - MTE-int LTR MaLR -564 1016 903 3 720 723 339 10 0 chr1 17794872 17795064 -179400368 - ID_B1 SINE B4 -29 195 2 3 720 789 326 39 63 chr1 17797360 17797645 -179397787 + B4 SINE B4 15 292 0 3 720 405 287 102 70 chr1 17797668 17797987 -179397445 + L1MD LINE L1 2238 2569 -3577 3 720 186 71 0 0 chr1 17798043 17798071 -179397361 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 720 387 73 0 0 chr1 17798127 17798182 -179397250 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 720 37 23 0 0 chr1 17799132 17799176 -179396256 + AT_rich Low_complexity Low_complexity 1 44 0 3 720 23 0 0 0 chr1 17799391 17799414 -179396018 + AT_rich Low_complexity Low_complexity 1 23 0 3 720 1026 173 194 4 chr1 17801495 17801727 -179393705 + ORR1C2 LTR MaLR 10 285 -99 3 720 23215 174 41 15 chr1 17801729 17804290 -179391142 + L1_Mus4 LINE L1 548 3131 -2752 3 720 207 0 0 0 chr1 17804290 17804313 -179391119 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 720 23215 150 36 9 chr1 17804313 17807690 -179387742 + L1_Mus4 LINE L1 3132 6634 -2 3 720 321 169 189 11 chr1 17807718 17807756 -179387676 + ORR1C2 LTR MaLR 273 317 -61 3 720 1303 210 96 59 chr1 17807756 17808110 -179387322 - ORR1B2 LTR MaLR 0 367 1 3 720 321 169 189 11 chr1 17808110 17808161 -179387271 + ORR1C2 LTR MaLR 318 377 -1 3 720 22759 165 22 10 chr1 17808602 17814158 -179381274 + Lx2 LINE L1 757 6385 -612 3 720 237 83 0 0 chr1 17814359 17814395 -179381037 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 720 607 246 7 40 chr1 17814404 17814556 -179380876 - B1_Mur4 SINE Alu -2 148 2 3 720 22 35 0 0 chr1 17814674 17814703 -179380729 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 468 333 26 0 chr1 17814708 17814822 -179380610 - B1F SINE Alu -14 135 19 3 720 300 154 0 0 chr1 17816325 17816377 -179379055 + GA-rich Low_complexity Low_complexity 2 53 0 3 720 32 0 0 0 chr1 17816571 17816603 -179378829 + AT_rich Low_complexity Low_complexity 1 32 0 3 720 1101 95 0 26 chr1 17816607 17816759 -179378673 + B1_Mus1 SINE Alu 1 148 0 3 720 249 167 0 0 chr1 17816759 17816820 -179378612 + A-rich Low_complexity Low_complexity 2 62 0 3 720 798 41 0 0 chr1 17816822 17816920 -179378512 + (GAAAA)n Simple_repeat Simple_repeat 2 99 0 3 720 2940 92 5 7 chr1 17817358 17817776 -179377656 + RLTR13D6 LTR ERVK 9 425 -477 3 720 761 65 0 0 chr1 17817777 17817870 -179377562 - L1_Mus2 LINE L1 -878 5688 5596 3 720 385 221 0 0 chr1 17817867 17817944 -179377488 - Lx7 LINE L1 -69 7627 7551 3 720 419 0 20 0 chr1 17817944 17817995 -179377437 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 3 720 22 0 0 0 chr1 17819236 17819258 -179376174 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 19888 175 90 5 chr1 17820159 17823983 -179371449 + Lx LINE L1 397 4667 -1219 3 720 315 0 0 0 chr1 17823983 17824018 -179371414 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 11 19888 156 63 14 chr1 17824018 17825986 -179369446 + Lx LINE L1 4668 6654 0 3 721 21 57 0 0 chr1 17826106 17826141 -179369291 + AT_rich Low_complexity Low_complexity 1 35 0 3 721 376 305 29 18 chr1 17826194 17826364 -179369068 - Lx7 LINE L1 -1905 5791 5620 3 721 181 226 24 0 chr1 17826584 17826668 -179368764 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 3 721 200 307 0 13 chr1 17826673 17826749 -179368683 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 721 227 143 0 39 chr1 17826766 17826817 -179368615 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3 721 333 118 0 0 chr1 17826840 17826891 -179368541 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 721 35 24 0 0 chr1 17828413 17828455 -179366977 + AT_rich Low_complexity Low_complexity 1 42 0 3 721 745 82 0 16 chr1 17828874 17828998 -179366434 + L1_Mus4 LINE L1 6511 6632 -4 3 721 402 57 0 0 chr1 17829162 17829215 -179366217 + (CCA)n Simple_repeat Simple_repeat 1 53 0 3 721 227 280 26 70 chr1 17829257 17829372 -179366060 - Lx7 LINE L1 -393 7303 7194 3 721 350 219 41 30 chr1 17829374 17829618 -179365814 + (TTATA)n Simple_repeat Simple_repeat 1 246 0 3 721 388 275 145 0 chr1 17829647 17829778 -179365654 - Lx6 LINE L1 -945 6515 6366 3 721 722 268 52 26 chr1 17829767 17830035 -179365397 - Lx7 LINE L1 -1418 6278 6004 3 721 2034 152 9 0 chr1 17831202 17831524 -179363908 - ORR1A2 LTR MaLR 0 327 3 3 721 9001 160 107 3 chr1 17831525 17833303 -179362129 - ORR1A2-int LTR MaLR 0 1963 1 3 721 361 142 16 30 chr1 17833317 17833404 -179362028 - ORR1A2 LTR MaLR -272 122 1 3 721 724 215 132 10 chr1 17833627 17833824 -179361608 + URR1A DNA MER1_type 3 223 -3 3 721 239 230 109 47 chr1 17833896 17833960 -179361472 + MER5A DNA MER1_type 121 188 -1 3 721 360 0 0 0 chr1 17834009 17834049 -179361383 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 721 256 269 57 62 chr1 17834096 17834290 -179361142 + L1MD LINE L1 5135 5327 -819 3 721 371 280 100 50 chr1 17834263 17834519 -179360913 + Lx8 LINE L1 5297 5579 -718 3 721 276 133 0 0 chr1 17834521 17834581 -179360851 + (A)n Simple_repeat Simple_repeat 1 60 0 3 721 700 277 93 19 chr1 17834585 17834931 -179360501 + Lx8 LINE L1 5540 5942 -1702 3 721 453 206 0 0 chr1 17835307 17835404 -179360028 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 721 300 273 22 11 chr1 17835404 17835493 -179359939 + Lx8 LINE L1 6184 6273 -1200 3 721 2121 193 79 82 chr1 17835494 17835688 -179359744 - RMER6C LTR ERVK -21 669 487 3 721 198 91 0 0 chr1 17835688 17835721 -179359711 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 4 721 464 0 0 18 chr1 17835723 17835780 -179359652 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 721 2121 193 79 82 chr1 17835780 17836253 -179359179 - RMER6C LTR ERVK -204 486 1 3 721 1578 229 16 48 chr1 17836261 17836392 -179359040 - ORR1D1 LTR MaLR -10 364 237 4 721 2405 132 66 5 chr1 17836392 17836788 -179358644 - RLTR9B2 LTR ERVK 0 420 1 4 721 1578 229 16 48 chr1 17836788 17837032 -179358400 - ORR1D1 LTR MaLR -138 236 1 4 721 1087 283 152 35 chr1 17837037 17837445 -179357987 + Lx8 LINE L1 6294 6749 -724 3 721 698 289 34 29 chr1 17837624 17837831 -179357601 + Lx8 LINE L1 7078 7285 -188 3 721 192 97 0 0 chr1 17838202 17838233 -179357199 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 721 348 347 89 12 chr1 17838319 17838488 -179356944 + B3A SINE B2 1 182 -16 4 721 14193 130 32 2 chr1 17838528 17841987 -179353445 + Lx3A LINE L1 29 3593 -2293 4 721 8247 104 0 20 chr1 17841981 17842341 -179353091 + Lx3A LINE L1 5360 5712 -174 4 721 297 0 0 0 chr1 17842341 17842374 -179353058 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 721 8247 124 35 29 chr1 17842374 17843629 -179351803 + Lx3A LINE L1 5710 6981 0 4 721 382 258 63 25 chr1 17843820 17843979 -179351453 - L1MD LINE L1 -3762 2384 2220 4 721 22 56 0 0 chr1 17844219 17844255 -179351177 + AT_rich Low_complexity Low_complexity 1 36 0 4 721 341 269 179 43 chr1 17845930 17846548 -179348884 - L1ME2 LINE L1 -308 5856 5148 4 721 432 67 0 0 chr1 17848361 17848421 -179347011 + (TTTTTG)n Simple_repeat Simple_repeat 6 65 0 4 721 1124 95 0 0 chr1 17848421 17848569 -179346863 - B1_Mus1 SINE Alu 0 148 1 4 721 278 80 0 20 chr1 17848667 17848718 -179346714 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 721 476 16 16 0 chr1 17848751 17848812 -179346620 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 721 2157 254 51 16 chr1 17848825 17849448 -179345984 - Lx7 LINE L1 -286 7410 6766 4 721 337 229 84 0 chr1 17849432 17849515 -179345917 - Lx7 LINE L1 -1276 6420 6331 4 721 393 22 0 0 chr1 17850141 17850187 -179345245 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 4 721 594 0 0 0 chr1 17850187 17850252 -179345180 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 4 721 242 161 82 82 chr1 17850252 17850313 -179345119 - L1M2 LINE L1 -4391 2458 2398 4 721 309 264 26 62 chr1 17850710 17850823 -179344609 + RLTR13D3 LTR ERVK 976 1084 -30 4 721 4078 100 13 3 chr1 17850833 17851456 -179343976 - L1_Mur1 LINE L1 -1680 4206 3578 4 721 207 0 0 0 chr1 17851506 17851529 -179343903 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 721 10763 137 19 12 chr1 17851633 17855638 -179339794 + L1_Mus3 LINE L1 476 6638 0 4 721 4538 123 15 38 chr1 17855655 17856078 -179339354 + L1_Mur1 LINE L1 2149 2567 -3319 4 721 1057 91 28 0 chr1 17856078 17856221 -179339211 + B1_Mus1 SINE Alu 2 148 0 4 721 4538 123 15 38 chr1 17856221 17856584 -179338848 + L1_Mur1 LINE L1 2568 2917 -2969 4 721 21977 149 51 27 chr1 17856579 17862694 -179332738 + Lx3A LINE L1 208 6474 -507 4 721 182 341 0 81 chr1 17864060 17864159 -179331273 - MER5A DNA MER1_type -84 105 15 4 721 419 284 141 20 chr1 17864230 17864428 -179331004 + ID_B1 SINE B4 1 222 -2 4 721 2129 136 5 73 chr1 17864836 17865190 -179330242 + RMER17D2 LTR ERVK 1 453 -356 4 721 495 0 0 0 chr1 17865190 17865245 -179330187 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 721 2129 157 23 3 chr1 17865245 17865593 -179329839 + RMER17D2 LTR ERVK 454 808 -1 4 721 647 92 0 0 chr1 17865668 17865755 -179329677 - B2_Mm2 SINE B2 -108 87 1 4 721 4546 113 10 10 chr1 17866242 17867027 -179328405 + L1VL4 LINE L1 256 1036 -2523 4 721 7503 171 24 32 chr1 17867019 17868926 -179326506 + Lx2B LINE L1 5096 6998 -2 4 721 21 0 0 0 chr1 17869212 17869233 -179326199 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 3056 66 13 2 chr1 17869242 17869637 -179325795 - MTB LTR MaLR 0 400 2 4 721 7858 131 52 11 chr1 17869831 17871641 -179323791 - Lx3A LINE L1 -5 6976 5106 4 721 1104 104 0 0 chr1 17871638 17871801 -179323631 + Lx3A LINE L1 4966 5128 -758 4 721 206 200 0 32 chr1 17872261 17872323 -179323109 + T-rich Low_complexity Low_complexity 1 60 0 4 721 262 70 47 0 chr1 17872279 17872322 -179323110 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 4 721 1109 62 0 20 chr1 17872323 17872472 -179322960 - B1_Mus1 SINE Alu 0 148 3 4 721 405 0 0 0 chr1 17872488 17872533 -179322899 + (TTG)n Simple_repeat Simple_repeat 1 45 0 4 721 639 0 0 0 chr1 17872533 17872604 -179322828 + (TTC)n Simple_repeat Simple_repeat 2 72 0 4 721 345 326 62 17 chr1 17873935 17874113 -179321319 - L1ME3A LINE L1 -201 5972 5787 4 721 7036 121 11 1 chr1 17874115 17875541 -179319891 - Lx LINE L1 -6 6648 5208 4 721 253 319 117 15 chr1 17876209 17876483 -179318949 - L1ME3A LINE L1 -1306 4840 4539 4 721 448 312 164 48 chr1 17876515 17877185 -179318247 - L1ME3A LINE L1 -1670 4476 3729 4 721 340 217 22 0 chr1 17877191 17877283 -179318149 + Lx6 LINE L1 5718 5811 -1649 4 721 3852 145 4 11 chr1 17878573 17879413 -179316019 - Lx2 LINE L1 -917 6080 5245 4 721 1288 208 15 7 chr1 17879413 17879684 -179315748 + Lx2 LINE L1 6103 6375 -622 4 721 5431 104 2 6 chr1 17879654 17880617 -179314815 - L1_Mus3 LINE L1 -304 6334 5383 4 721 1808 105 15 4 chr1 17880618 17880886 -179314546 + L1_Mus3 LINE L1 6355 6625 -13 4 721 3795 135 42 3 chr1 17880880 17881518 -179313914 + Lx2 LINE L1 6335 6997 0 4 721 31 0 0 0 chr1 17881519 17881550 -179313882 + AT_rich Low_complexity Low_complexity 1 31 0 4 721 226 279 106 66 chr1 17881953 17882132 -179313300 + MIR SINE MIR 21 229 -39 4 721 200 200 46 0 chr1 17883097 17883162 -179312270 + (TTA)n Simple_repeat Simple_repeat 2 69 0 4 721 297 75 0 0 chr1 17883354 17883394 -179312038 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 721 224 234 0 0 chr1 17883394 17883441 -179311991 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 4 721 323 161 206 11 chr1 17883776 17883890 -179311542 - B2_Mm2 SINE B2 -1 194 46 4 721 1099 157 6 0 chr1 17883893 17884071 -179311361 - B2_Mm1t SINE B2 -14 179 1 4 721 13045 109 66 6 chr1 17884144 17885580 -179309852 - L1_Mus3 LINE L1 -6 6632 5113 4 721 4527 62 19 3 chr1 17885580 17886158 -179309274 + LTRIS_Mus LTR ERV1 1 587 0 4 721 13045 135 17 7 chr1 17886158 17887542 -179307890 - L1_Mus3 LINE L1 -771 5112 3709 4 721 1106 103 0 0 chr1 17887544 17887690 -179307742 + B1_Mm SINE Alu 2 147 0 4 721 36156 45 0 3 chr1 17887710 17894182 -179301250 - L1Md_T LINE L1 0 6585 38 4 721 350 208 0 0 chr1 17894193 17894270 -179301162 - L1M4 LINE L1 -2412 3734 3658 4 721 14456 123 16 15 chr1 17894270 17897490 -179297942 - L1VL1 LINE L1 -281 3417 191 4 721 22 0 0 0 chr1 17897821 17897843 -179297589 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 1971 161 14 3 chr1 17897866 17898221 -179297211 - Lx2 LINE L1 -2 6995 6637 4 721 282 244 0 0 chr1 17899185 17899267 -179296165 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 721 193 338 54 0 chr1 17899361 17899435 -179295997 - MIR SINE MIR -122 140 63 4 721 300 234 84 99 chr1 17900543 17900685 -179294747 + RLTR25B LTR ERVK 370 509 -519 4 721 772 87 0 10 chr1 17900614 17900718 -179294714 + B1_Mm SINE Alu 35 137 -10 4 721 367 35 35 0 chr1 17900718 17900775 -179294657 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 721 1323 95 16 5 chr1 17901305 17901496 -179293936 - B2_Mm2 SINE B2 0 195 3 4 721 26 30 0 0 chr1 17902034 17902067 -179293365 + AT_rich Low_complexity Low_complexity 1 33 0 4 721 1152 49 21 0 chr1 17902231 17902375 -179293057 + B1_Mus1 SINE Alu 2 148 0 4 721 417 153 0 0 chr1 17902375 17902447 -179292985 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 4 721 244 304 14 14 chr1 17902757 17902827 -179292605 - ORR1E LTR MaLR -43 316 247 4 721 258 32 0 0 chr1 17903068 17903099 -179292333 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 4 721 342 0 0 0 chr1 17903795 17903833 -179291599 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 721 525 58 0 0 chr1 17903833 17903901 -179291531 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 721 266 227 14 43 chr1 17904718 17904856 -179290576 + (TTAA)n Simple_repeat Simple_repeat 3 136 0 4 721 369 43 0 0 chr1 17904894 17904941 -179290491 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 721 24 85 0 0 chr1 17905028 17905087 -179290345 + AT_rich Low_complexity Low_complexity 1 59 0 4 721 249 128 0 0 chr1 17906005 17906052 -179289380 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 721 22 0 0 0 chr1 17906169 17906191 -179289241 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 36160 31 0 1 chr1 17906211 17912668 -179282764 - L1Md_T LINE L1 0 6585 66 4 721 227 357 58 113 chr1 17913668 17913764 -179281668 - ZP3AR Satellite Satellite -28 169 54 4 721 247 195 0 0 chr1 17913764 17913805 -179281627 - ID4 SINE ID -39 44 4 4 721 227 357 58 113 chr1 17913805 17913847 -179281585 - ZP3AR Satellite Satellite -28 53 1 4 721 3017 74 7 41 chr1 17914093 17914529 -179280903 - BGLII LTR ERVK 0 421 1 4 721 21 36 0 0 chr1 17914960 17914988 -179280444 + AT_rich Low_complexity Low_complexity 1 28 0 4 721 520 311 107 52 chr1 17916477 17917039 -179278393 + L1MC1 LINE L1 5721 6313 -20 4 721 3732 141 28 101 chr1 17917161 17917976 -179277456 + RMER6A LTR ERVK 1 756 0 4 721 2948 90 2 5 chr1 17919564 17919965 -179275467 + MTB LTR MaLR 1 400 0 4 721 841 310 69 22 chr1 17920265 17920671 -179274761 - Lx8 LINE L1 -234 7239 6815 4 721 25 0 0 0 chr1 17920782 17920807 -179274625 + AT_rich Low_complexity Low_complexity 1 25 0 4 721 498 70 0 0 chr1 17920925 17920996 -179274436 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 721 471 107 0 0 chr1 17921167 17921251 -179274181 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 721 318 26 0 0 chr1 17921251 17921290 -179274142 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 721 4733 126 67 29 chr1 17921928 17922797 -179272635 - RLTR13D6 LTR ERVK 0 902 1 4 721 247 258 99 22 chr1 17922828 17922919 -179272513 + MER5A1 DNA MER1_type 51 148 -18 4 721 192 40 0 0 chr1 17923108 17923133 -179272299 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 721 438 20 0 0 chr1 17923416 17923467 -179271965 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 721 861 168 131 10 chr1 17923930 17924128 -179271304 - URR1A DNA MER1_type 0 226 5 4 721 3472 212 47 25 chr1 17924237 17925038 -179270394 - Lx5 LINE L1 -8 7042 6224 4 721 2202 163 27 7 chr1 17925235 17925649 -179269783 - BGLII_Mus LTR ERVK 0 422 1 4 721 4017 202 101 32 chr1 17925650 17927413 -179268019 - MYSERV16_I-int LTR ERVK -1 2325 393 4 721 2885 205 39 6 chr1 17927536 17928204 -179267228 - MYSERV6-int LTR ERVK -4344 4615 3926 5 721 2676 128 38 38 chr1 17928204 17928682 -179266750 - RLTR45 LTR ERVK 0 482 5 5 721 7251 106 3 2 chr1 17928683 17929816 -179265616 - RLTR45-int LTR ERVK -456 7761 6331 5 721 2479 45 19 0 chr1 17930163 17930477 -179264955 - RLTR45-int LTR ERVK -5596 1648 1329 5 721 692 134 0 0 chr1 17930974 17931093 -179264339 - RLTR45-int LTR ERVK -6213 1031 913 5 721 1658 64 0 5 chr1 17931209 17931429 -179264003 - RLTR45-int LTR ERVK -6334 910 692 5 721 1045 8 0 8 chr1 17931801 17931926 -179263506 - RLTR45-int LTR ERVK -6552 692 569 5 721 451 123 0 110 chr1 17932716 17932807 -179262625 - RLTR45-int LTR ERVK -6673 571 491 5 721 2730 59 0 0 chr1 17932807 17933164 -179262268 + L1Md_F3 LINE L1 5230 5586 -297 5 721 7932 39 11 2 chr1 17933165 17934139 -179261293 + L1Md_F3 LINE L1 5588 6570 -14 5 721 3038 108 31 10 chr1 17934145 17934630 -179260802 - RLTR45-int LTR ERVK -6749 495 1 5 721 2240 138 145 19 chr1 17934630 17935058 -179260374 - RLTR45 LTR ERVK 0 482 1 5 721 1875 169 8 14 chr1 17935058 17935425 -179260007 - MYSERV6-int LTR ERVK -5028 3931 3567 5 721 7238 68 1 6 chr1 17935441 17936424 -179259008 - L1_Mus1 LINE L1 -2 6565 5588 5 721 2635 220 44 6 chr1 17936430 17937088 -179258344 - MYSERV6-int LTR ERVK -5385 3574 2892 5 721 6204 283 35 42 chr1 17939735 17940923 -179254509 - MYSERV6-int LTR ERVK -6046 2913 1799 5 721 1461 73 0 25 chr1 17940923 17941120 -179254312 - B2_Mm1a SINE B2 0 193 2 5 721 6204 283 35 42 chr1 17941120 17942387 -179253045 - MYSERV6-int LTR ERVK -7161 1798 476 5 721 2240 81 16 0 chr1 17942931 17943240 -179252192 + RLTR10 LTR ERVK 1 314 -76 5 721 21554 38 5 11 chr1 17943243 17946816 -179248616 + L1Md_T LINE L1 416 3963 -1920 5 721 2014 105 3 69 chr1 17946816 17947165 -179248267 + IAPLTR1a_Mm LTR ERVK 1 326 -11 5 721 55510 12 1 3 chr1 17947166 17953656 -179241776 + IAPEz-int LTR ERVK 1 6481 0 5 721 1998 111 3 69 chr1 17953656 17954005 -179241427 + IAPLTR1a_Mm LTR ERVK 1 326 -11 5 721 13048 32 0 0 chr1 17954012 17955642 -179239790 + L1Md_T LINE L1 3957 5586 -297 5 721 8438 29 4 0 chr1 17955642 17956634 -179238798 + L1Md_T LINE L1 5587 6582 0 5 721 712 90 10 0 chr1 17956635 17956735 -179238697 + RLTR10 LTR ERVK 288 388 -2 5 90 2642 129 8 50 chr1 17956854 17957335 -179238097 + RLTR22_Mur LTR ERVK 353 813 -1035 5 722 21 0 0 0 chr1 17957527 17957548 -179237884 + AT_rich Low_complexity Low_complexity 1 21 0 5 722 359 355 43 57 chr1 17957548 17957757 -179237675 + RMER12 LTR ERVK 1117 1322 0 5 722 1655 177 22 30 chr1 17958187 17958548 -179236884 + L1_Mur3 LINE L1 5411 5768 -112 5 722 841 251 8 20 chr1 17958577 17958821 -179236611 - Lx6 LINE L1 -1430 6030 5790 5 722 1885 280 114 83 chr1 17958819 17960150 -179235282 + Lx6 LINE L1 6126 7454 -6 5 722 1096 161 33 4 chr1 17960263 17960507 -179234925 + L1_Mur3 LINE L1 2148 2398 -3482 5 722 6564 183 62 45 chr1 17960491 17960797 -179234635 + L1_Mur3 LINE L1 3647 4018 -1862 5 722 2192 113 25 0 chr1 17960797 17961116 -179234316 - ORR1A2 LTR MaLR 0 327 1 5 722 6564 183 62 45 chr1 17961116 17961606 -179233826 + L1_Mur3 LINE L1 4019 4481 -1399 5 722 1677 217 26 52 chr1 17961606 17961994 -179233438 - ORR1C1 LTR MaLR 0 378 1 5 722 6564 183 62 45 chr1 17961994 17962926 -179232506 + L1_Mur3 LINE L1 4482 5406 -474 5 722 2400 71 46 0 chr1 17962951 17963274 -179232158 + ORR1A0 LTR MaLR 1 338 -8 5 722 12668 77 15 24 chr1 17963278 17965086 -179230346 + ORR1A0-int LTR MaLR 1 1792 0 5 722 1999 49 193 40 chr1 17965086 17965386 -179230046 + ORR1A0 LTR MaLR 1 346 0 5 722 525 219 0 30 chr1 17965386 17965485 -179229947 - RLTR25B LTR ERVK -927 101 6 5 722 218 320 67 0 chr1 17965564 17965639 -179229793 - B3 SINE B2 -129 87 8 5 722 23 54 0 0 chr1 17965889 17965926 -179229506 + AT_rich Low_complexity Low_complexity 1 37 0 5 722 293 295 35 35 chr1 17966441 17966613 -179228819 + L1_Rod LINE L1 3799 3970 -1877 5 722 503 293 43 19 chr1 17966838 17967047 -179228385 + Lx8 LINE L1 6464 6677 -796 5 722 285 29 0 0 chr1 17967055 17967089 -179228343 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 722 286 325 26 0 chr1 17967213 17967327 -179228105 + Lx8 LINE L1 6839 6955 -518 5 722 437 336 60 0 chr1 17968351 17968500 -179226932 - B3 SINE B2 -57 159 2 5 722 269 20 39 39 chr1 17968958 17969010 -179226422 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 722 675 196 0 0 chr1 17969010 17969148 -179226284 + GA-rich Low_complexity Low_complexity 1 138 0 5 722 919 94 72 0 chr1 17969171 17969309 -179226123 + B1_Mus1 SINE Alu 1 148 0 5 722 195 42 0 0 chr1 17969478 17969502 -179225930 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 5 722 628 47 359 0 chr1 17969512 17969618 -179225814 - B1_Mus1 SINE Alu -4 144 1 5 722 275 141 62 0 chr1 17971063 17971127 -179224305 + L1_Mur3 LINE L1 2803 2870 -3010 5 722 247 229 0 41 chr1 17971161 17971234 -179224198 + L1_Mur3 LINE L1 3062 3131 -2749 5 722 234 206 0 45 chr1 17971340 17971406 -179224026 + A-rich Low_complexity Low_complexity 2 64 0 5 722 1668 191 39 106 chr1 17972553 17972969 -179222463 - RMER10B LTR ERVL -10 388 1 5 722 1326 174 60 113 chr1 17973341 17973774 -179221658 + RMER17C LTR ERVK 1 410 0 5 722 3625 214 44 34 chr1 17974838 17975321 -179220111 + L1_Mur3 LINE L1 3006 3477 -2403 5 722 1405 70 38 0 chr1 17975321 17975506 -179219926 + B2_Mm2 SINE B2 2 193 -2 5 722 3625 214 44 34 chr1 17975506 17976241 -179219191 + L1_Mur3 LINE L1 3478 4236 -1644 5 722 216 130 0 0 chr1 17976411 17976457 -179218975 + (A)n Simple_repeat Simple_repeat 1 46 0 5 722 1115 70 32 0 chr1 17976538 17976694 -179218738 + Lx3_Mus LINE L1 6613 6773 -236 5 722 3079 59 32 7 chr1 17976758 17977201 -179218231 - L1_Mur1 LINE L1 -306 5580 5127 5 722 31 26 0 0 chr1 17978056 17978094 -179217338 + AT_rich Low_complexity Low_complexity 1 38 0 5 722 310 303 25 62 chr1 17979060 17979222 -179216210 - L1M2 LINE L1 -3859 2284 2129 5 722 6909 102 19 2 chr1 17979711 17980864 -179214568 - L1_Mus4 LINE L1 -7 6629 5446 5 722 309 26 0 0 chr1 17980910 17980948 -179214484 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 722 510 284 135 6 chr1 17982174 17982344 -179213088 - B3 SINE B2 -1 215 24 5 722 598 269 11 91 chr1 17982397 17982573 -179212859 - RSINE1 SINE B4 0 165 4 5 722 732 291 48 140 chr1 17982659 17983074 -179212358 + MTE2a LTR MaLR 1 377 -2 5 722 309 317 85 24 chr1 17983390 17983555 -179211877 + MER20 DNA MER1_type 1 175 -44 5 722 7428 54 6 14 chr1 17984522 17985662 -179209770 - L1Md_F2 LINE L1 0 6582 5456 5 722 725 282 14 9 chr1 17987831 17988046 -179207386 + B3 SINE B2 1 216 0 5 722 226 323 79 24 chr1 17988477 17988604 -179206828 + MIRc SINE MIR 34 167 -101 5 722 378 321 64 7 chr1 17988617 17988758 -179206674 - RSINE1 SINE B4 -14 151 3 5 722 277 340 0 104 chr1 17988868 17988983 -179206449 - B4A SINE B4 -156 136 34 5 722 186 189 0 0 chr1 17989285 17989322 -179206110 + (TATG)n Simple_repeat Simple_repeat 4 40 0 5 722 225 0 0 0 chr1 17989322 17989347 -179206085 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 722 305 200 57 0 chr1 17989348 17989418 -179206014 + PB1D9 SINE Alu 42 115 -5 5 722 695 282 26 1 chr1 17989875 17990113 -179205319 + Lx6 LINE L1 6282 6747 -713 5 722 186 220 0 0 chr1 17990133 17990192 -179205240 + A-rich Low_complexity Low_complexity 2 60 0 5 722 1254 286 22 17 chr1 17990197 17990713 -179204719 + Lx6 LINE L1 6464 7321 -139 5 722 414 186 0 0 chr1 17990714 17990800 -179204632 + CT-rich Low_complexity Low_complexity 2 87 0 5 722 446 0 19 0 chr1 17990912 17990966 -179204466 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 722 379 281 87 73 chr1 17990971 17991121 -179204311 + B4A SINE B4 78 229 -63 5 722 1329 77 11 0 chr1 17991114 17991296 -179204136 + B2_Mm1t SINE B2 10 193 0 5 722 932 197 16 0 chr1 17991496 17991684 -179203748 - URR1B DNA MER1_type 0 225 35 5 722 308 311 76 27 chr1 17991533 17991718 -179203714 + CYRA11_Mm Unknown Y-chromosome 212 405 -212 5 722 824 236 34 19 chr1 17991755 17991962 -179203470 + B3 SINE B2 1 210 -6 5 722 1183 64 0 0 chr1 17992181 17992322 -179203110 + B1_Mus1 SINE Alu 1 141 -7 5 722 378 0 0 0 chr1 17992326 17992368 -179203064 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 722 3571 83 44 4 chr1 17992368 17992873 -179202559 + L1_Mus3 LINE L1 6111 6635 -3 5 722 582 193 17 17 chr1 17992962 17993078 -179202354 + B3 SINE B2 1 116 -100 5 722 618 265 74 19 chr1 17993057 17993255 -179202177 + B3A SINE B2 6 216 0 5 722 320 320 1 0 chr1 17993304 17993407 -179202025 + BC1_Mm scRNA scRNA 2 105 -47 5 722 328 296 23 0 chr1 17993627 17993715 -179201717 + B4 SINE B4 203 292 0 5 722 249 264 27 14 chr1 17993805 17993878 -179201554 + ID2 SINE ID 1 74 -9 5 722 315 317 42 35 chr1 17994767 17994911 -179200521 + Lx8 LINE L1 7136 7280 -193 5 722 626 89 36 0 chr1 17995035 17995147 -179200285 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 722 791 181 0 40 chr1 17995224 17995374 -179200058 + B1_Mus1 SINE Alu 1 144 -4 5 722 233 89 0 22 chr1 17995375 17995421 -179200011 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 5 722 455 227 34 0 chr1 17995432 17995520 -179199912 + PB1D9 SINE Alu 9 99 -21 5 722 288 0 0 0 chr1 17995667 17995699 -179199733 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 722 437 319 69 17 chr1 17996229 17996462 -179198970 - L1MEc LINE L1 -5605 795 551 5 722 311 247 36 24 chr1 17996590 17996653 -179198779 + L1MEc LINE L1 831 896 -5504 5 722 3453 25 5 0 chr1 17996653 17997047 -179198385 - MTA_Mm LTR MaLR 0 396 1 5 722 311 247 36 24 chr1 17997047 17997066 -179198366 + L1MEc LINE L1 897 914 -5486 5 722 797 151 301 0 chr1 17997109 17997275 -179198157 - B3 SINE B2 0 216 1 5 722 238 326 26 118 chr1 17997415 17997568 -179197864 + MT2B LTR ERVL 127 265 -336 5 722 648 285 9 21 chr1 17997448 17997624 -179197808 + ID_B1 SINE B4 76 246 -46 5 722 459 0 0 0 chr1 17997700 17997751 -179197681 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 722 708 218 58 29 chr1 17997811 17998019 -179197413 + B3 SINE B2 2 215 -1 5 722 27 87 0 0 chr1 17998027 17998096 -179197336 + AT_rich Low_complexity Low_complexity 1 69 0 5 722 539 172 58 66 chr1 17998598 17998735 -179196697 - B1_Mur2 SINE Alu 0 149 14 5 722 578 258 30 23 chr1 17998763 17998894 -179196538 - B1F SINE Alu -10 139 8 5 722 622 163 118 31 chr1 17999389 17999516 -179195916 + ID_B1 SINE B4 87 224 0 5 722 379 259 62 0 chr1 18000001 18000082 -179195350 - B1F1 SINE Alu -62 87 2 1 722 885 121 56 14 chr1 18000193 18000336 -179195096 + B1_Mur4 SINE Alu 2 150 0 2 722 23 0 0 0 chr1 18000524 18000547 -179194885 + AT_rich Low_complexity Low_complexity 1 23 0 3 722 787 149 187 32 chr1 18000633 18000820 -179194612 - B3 SINE B2 0 216 1 4 722 231 286 0 0 chr1 18000964 18001013 -179194419 - ID4_ SINE ID -11 72 24 5 722 396 0 0 0 chr1 18001077 18001121 -179194311 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 6 722 351 292 42 49 chr1 18001121 18001265 -179194167 + ID_B1 SINE B4 69 211 -13 7 722 638 206 39 16 chr1 18001139 18001267 -179194165 + B1_Mus2 SINE Alu 6 136 -11 8 722 256 295 0 0 chr1 18001298 18001359 -179194073 - ID4_ SINE ID -21 62 2 9 722 1272 59 53 12 chr1 18001653 18001824 -179193608 + B2_Mm2 SINE B2 4 181 -14 1 722 758 143 16 0 chr1 18001870 18001996 -179193436 + B1_Mur3 SINE Alu 2 129 -20 1 722 512 187 36 36 chr1 18001871 18002010 -179193422 + ID_B1 SINE B4 84 222 -2 1 722 435 19 0 0 chr1 18002032 18002084 -179193348 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 722 390 85 0 0 chr1 18002086 18002145 -179193287 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 722 1176 100 50 6 chr1 18003225 18003374 -179192058 + B2_Mm2 SINE B2 1 154 -41 1 722 389 20 20 0 chr1 18003374 18003424 -179192008 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 722 1176 100 50 6 chr1 18003424 18003455 -179191977 + B2_Mm2 SINE B2 155 188 -7 1 722 327 240 73 46 chr1 18003544 18003653 -179191779 - RSINE1 SINE B4 -35 130 19 1 722 913 267 0 5 chr1 18003855 18004062 -179191370 + B3 SINE B2 1 206 -10 1 722 889 94 81 192 chr1 18004106 18004242 -179191190 - B2_Mm2 SINE B2 -16 179 64 1 722 334 0 43 0 chr1 18004242 18004288 -179191144 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 2 722 1100 59 15 0 chr1 18004288 18004423 -179191009 - B1_Mus1 SINE Alu -9 139 3 2 722 889 94 81 192 chr1 18004423 18004483 -179190949 - B2_Mm2 SINE B2 -132 63 5 1 722 687 220 126 11 chr1 18004488 18004663 -179190769 - B3A SINE B2 -3 195 1 2 722 429 275 83 0 chr1 18005062 18005182 -179190250 + B1_Mur1 SINE Alu 1 130 -19 2 722 26 0 0 0 chr1 18005270 18005296 -179190136 + AT_rich Low_complexity Low_complexity 1 26 0 2 722 423 0 0 0 chr1 18005299 18005346 -179190086 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 722 386 262 101 18 chr1 18005355 18005464 -179189968 - B3A SINE B2 -79 119 2 2 722 652 270 6 41 chr1 18005847 18006017 -179189415 + RSINE1 SINE B4 2 165 0 2 722 1942 99 58 10 chr1 18006486 18006781 -179188651 + RLTR27 LTR ERVK 1 309 0 2 722 705 153 75 22 chr1 18007168 18007302 -179188130 + B1_Mur1 SINE Alu 9 149 0 2 722 23 33 0 0 chr1 18007461 18007491 -179187941 + AT_rich Low_complexity Low_complexity 1 30 0 3 722 490 231 8 8 chr1 18007659 18007777 -179187655 + ID_B1 SINE B4 102 219 -5 3 722 9617 144 11 15 chr1 18007838 18010006 -179185426 - L1_Mus2 LINE L1 -1 6565 4423 3 722 2711 105 2 10 chr1 18010006 18010401 -179185031 - L1Md_F2 LINE L1 0 6582 6191 3 722 9617 184 7 27 chr1 18010401 18010798 -179184634 - L1_Mus2 LINE L1 -1455 4422 4022 3 722 22266 117 11 3 chr1 18010803 18014227 -179181205 + L1_Mus1 LINE L1 2477 5937 -630 3 722 420 67 0 0 chr1 18014485 18014545 -179180887 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 722 2842 116 177 0 chr1 18016311 18016802 -179178630 - L1_Mm LINE L1 -2621 3262 2685 3 722 6495 124 7 15 chr1 18016799 18017160 -179178272 + L1_Mus2 LINE L1 4898 5257 -626 3 722 4182 51 0 6 chr1 18017160 18017675 -179177757 + L1Md_F2 LINE L1 6071 6582 0 3 722 7427 82 9 21 chr1 18017675 18019003 -179176429 + L1_Mus2 LINE L1 5258 6566 0 3 722 23 0 0 0 chr1 18019036 18019059 -179176373 + AT_rich Low_complexity Low_complexity 1 23 0 3 722 387 0 0 0 chr1 18019247 18019290 -179176142 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 722 3204 64 43 52 chr1 18019804 18020266 -179175166 - L1Md_F2 LINE L1 -12 6570 6113 4 722 558 223 249 58 chr1 18020379 18020688 -179174744 + RLTR9A LTR ERVK 1 368 0 4 722 272 254 0 0 chr1 18021360 18021419 -179174013 + L1M3 LINE L1 5535 5593 -575 4 722 184 243 100 0 chr1 18021700 18021770 -179173662 + MIR3 SINE MIR 83 159 -49 4 722 468 99 0 0 chr1 18023070 18023141 -179172291 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 722 665 312 83 77 chr1 18023437 18023983 -179171449 - L2 LINE L2 -782 2637 2075 4 722 203 0 0 36 chr1 18023989 18024017 -179171415 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 722 1139 56 0 14 chr1 18024017 18024155 -179171277 - B1_Mm SINE Alu -9 138 1 4 722 665 312 83 77 chr1 18024155 18024261 -179171171 - L2 LINE L2 -1345 2074 1981 4 722 307 227 53 0 chr1 18024306 18024381 -179171051 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 4 722 218 105 26 0 chr1 18024405 18024443 -179170989 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 5 722 609 133 0 0 chr1 18025091 18025189 -179170243 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 5 722 923 133 0 14 chr1 18025192 18025337 -179170095 - B1_Mus1 SINE Alu -5 143 1 5 722 379 52 17 17 chr1 18025575 18025634 -179169798 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 722 405 0 0 0 chr1 18025634 18025679 -179169753 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 722 284 333 24 0 chr1 18028604 18028688 -179166744 + RSINE1 SINE B4 66 151 -14 5 722 450 114 0 0 chr1 18028694 18028764 -179166668 + (CATA)n Simple_repeat Simple_repeat 2 71 0 5 722 22 56 0 0 chr1 18028788 18028824 -179166608 + AT_rich Low_complexity Low_complexity 1 36 0 5 722 281 292 0 6 chr1 18028935 18029104 -179166328 + GA-rich Low_complexity Low_complexity 1 167 0 5 722 2850 71 39 8 chr1 18029280 18029664 -179165768 + MTA_Mm LTR MaLR 1 396 0 5 722 594 250 231 5 chr1 18030594 18030805 -179164627 - MTD LTR MaLR -144 275 17 6 722 260 282 86 15 chr1 18030874 18031021 -179164411 + MIRb SINE MIR 17 184 -84 6 722 1636 234 65 13 chr1 18034753 18035151 -179160281 + MTD LTR MaLR 1 419 0 6 722 276 348 14 21 chr1 18035880 18036021 -179159411 + GA-rich Low_complexity Low_complexity 3 142 0 6 722 1522 221 28 14 chr1 18036021 18036375 -179159057 + RLTR19B LTR ERVK 357 715 0 6 722 743 239 138 62 chr1 18036470 18036928 -179158504 + RLTR31A_Mm LTR ERVK 7 561 0 6 722 291 175 0 0 chr1 18036935 18036992 -179158440 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 722 343 237 50 53 chr1 18036993 18037186 -179158246 + L1M5 LINE L1 5264 5455 -989 6 722 2899 56 0 35 chr1 18037728 18038098 -179157334 - IAPEY2_LTR LTR ERVK 0 357 1 6 722 363 23 0 0 chr1 18038118 18038162 -179157270 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 6 722 539 263 82 35 chr1 18038487 18038831 -179156601 + Lx8 LINE L1 5725 6081 -900 7 722 403 202 36 0 chr1 18038928 18039012 -179156420 + PB1D9 SINE Alu 13 99 -21 7 722 1467 319 88 31 chr1 18039021 18039700 -179155732 + Lx8 LINE L1 6633 7350 -123 7 722 3254 259 135 16 chr1 18039801 18040824 -179154608 + Lx8 LINE L1 6186 7330 -143 7 722 591 276 20 7 chr1 18041014 18041167 -179154265 - RSINE1 SINE B4 -8 157 3 7 722 268 310 92 0 chr1 18041519 18041606 -179153826 + RSINE1 SINE B4 43 137 -28 7 722 23 33 0 0 chr1 18041624 18041654 -179153778 + AT_rich Low_complexity Low_complexity 1 30 0 7 722 396 240 84 84 chr1 18041850 18041874 -179153558 - B2_Mm2 SINE B2 -3 192 167 7 722 528 16 0 0 chr1 18041874 18041935 -179153497 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 722 369 0 0 0 chr1 18041935 18041975 -179153457 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 722 543 240 84 84 chr1 18041975 18042140 -179153292 - B3A SINE B2 -29 166 2 7 722 31 0 0 0 chr1 18042625 18042656 -179152776 + AT_rich Low_complexity Low_complexity 1 31 0 7 722 23 33 0 0 chr1 18042670 18042700 -179152732 + AT_rich Low_complexity Low_complexity 1 30 0 8 722 399 272 0 37 chr1 18042700 18042807 -179152625 + PB1D9 SINE Alu 5 107 -13 8 722 243 0 0 0 chr1 18042807 18042834 -179152598 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 722 269 286 36 0 chr1 18043062 18043146 -179152286 + RSINE1 SINE B4 6 92 -73 8 722 256 190 69 0 chr1 18043144 18043202 -179152230 + B4 SINE B4 164 225 -67 8 722 201 238 0 0 chr1 18043304 18043346 -179152086 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 722 5579 105 23 35 chr1 18043687 18044604 -179150828 + RMER17A2 LTR ERVK 1 906 0 8 722 1318 113 340 64 chr1 18044644 18045050 -179150382 + RMER6A LTR ERVK 1 518 -238 8 722 226 220 34 0 chr1 18045167 18045226 -179150206 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 722 260 350 19 0 chr1 18045349 18045452 -179149980 + B1F SINE Alu 5 109 -40 8 722 226 297 66 26 chr1 18045574 18045650 -179149782 + B1F SINE Alu 34 112 -37 9 722 973 208 136 139 chr1 18045711 18046107 -179149325 + MTD LTR MaLR 1 395 -24 9 722 1061 101 0 6 chr1 18046128 18046288 -179149144 + B2_Mm2 SINE B2 3 161 -34 9 722 297 0 0 0 chr1 18046288 18046321 -179149111 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 722 1436 93 0 5 chr1 18046515 18046710 -179148722 + B2_Mm2 SINE B2 2 195 0 9 722 856 95 0 74 chr1 18046859 18047007 -179148425 + URR1A DNA MER1_type 87 223 -3 9 722 1543 132 59 65 chr1 18047048 18047372 -179148060 - RLTRETN_Mm LTR ERVK 0 322 1 9 722 222 278 0 0 chr1 18049952 18050006 -179145426 - B3A SINE B2 -88 110 57 9 722 401 246 85 78 chr1 18050503 18050644 -179144788 + B4 SINE B4 79 220 -72 9 722 696 142 55 0 chr1 18050518 18050645 -179144787 + B1_Mur4 SINE Alu 12 145 -5 9 722 408 40 0 0 chr1 18050647 18050697 -179144735 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 722 325 302 31 0 chr1 18050729 18050825 -179144607 + B1F1 SINE Alu 2 100 -49 1 722 585 42 0 0 chr1 18051050 18051122 -179144310 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 722 485 240 19 19 chr1 18051124 18051230 -179144202 - RSINE1 SINE B4 -35 130 25 1 722 555 154 118 0 chr1 18051247 18051357 -179144075 - B1_Mur4 SINE Alu 0 150 28 1 722 683 210 7 0 chr1 18051565 18051703 -179143729 + B1_Mur4 SINE Alu 5 143 -7 1 722 315 0 0 0 chr1 18051703 18051738 -179143694 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 722 29189 123 11 25 chr1 18051757 18057444 -179137988 - L1_Mus2 LINE L1 0 6566 952 1 722 31043 101 5 14 chr1 18057458 18063679 -179131753 - L1Md_F2 LINE L1 -4 6578 231 1 722 429 281 14 0 chr1 18063706 18063845 -179131587 - L1Md_F LINE L1 -5801 718 578 1 722 378 254 17 97 chr1 18063862 18064146 -179131286 - L1VL1 LINE L1 -5927 491 215 1 722 219 387 9 18 chr1 18064387 18064500 -179130932 - PB1D10 SINE Alu -5 112 1 1 722 799 142 0 23 chr1 18064710 18064840 -179130592 - B1_Mus1 SINE Alu -21 127 1 1 722 230 329 7 7 chr1 18064840 18064894 -179130538 - ORR1B1-int LTR MaLR -863 646 593 1 722 313 341 84 52 chr1 18064892 18065235 -179130197 - MLT1H2 LTR MaLR -39 450 97 1 722 3039 235 44 21 chr1 18066749 18067450 -179127982 + Lx5 LINE L1 6331 7047 -3 1 722 461 252 0 0 chr1 18067909 18068008 -179127424 + PB1D10 SINE Alu 2 100 -17 1 722 33978 56 1 5 chr1 18068034 18074330 -179121102 + L1Md_Gf LINE L1 1 5589 -297 1 722 9072 2 0 0 chr1 18074330 18075326 -179120106 + L1Md_A LINE L1 5587 6582 0 1 722 10665 23 1 0 chr1 18075328 18076634 -179118798 + L1Md_T LINE L1 4280 5586 -297 1 722 8462 31 1 0 chr1 18076634 18077629 -179117803 + L1Md_T LINE L1 5587 6582 0 1 722 216 0 0 0 chr1 18077656 18077680 -179117752 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1 722 283 325 157 35 chr1 18077752 18077815 -179117617 - ID_B1 SINE B4 -2 222 146 1 722 477 0 0 0 chr1 18077815 18077868 -179117564 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 722 283 325 157 35 chr1 18077868 18077890 -179117542 - ID_B1 SINE B4 -79 145 1 1 722 698 179 9 0 chr1 18077890 18078002 -179117430 - B3 SINE B2 -103 113 1 1 722 502 206 18 27 chr1 18078124 18078234 -179117198 - B1_Mur1 SINE Alu -8 141 33 1 722 387 276 114 0 chr1 18078230 18078335 -179117097 - PB1 SINE Alu -5 122 6 1 722 478 286 184 19 chr1 18078664 18078871 -179116561 - B4A SINE B4 -14 278 38 1 722 239 355 0 43 chr1 18078972 18079066 -179116366 + ID_B1 SINE B4 79 168 -56 1 722 310 246 57 64 chr1 18078987 18079093 -179116339 + B1F SINE Alu 13 119 -30 1 722 385 322 0 0 chr1 18079215 18079305 -179116127 + RSINE1 SINE B4 2 91 -74 1 722 15323 102 14 6 chr1 18079817 18082937 -179112495 + L1_Mus1 LINE L1 415 3562 -2321 1 722 2276 124 34 11 chr1 18082937 18083287 -179112145 - RLTR10D LTR ERVK 0 359 2 1 90 47350 73 9 16 chr1 18083288 18089875 -179105557 - IAP-d-int LTR ERVK 0 6542 1 1 723 2204 124 34 9 chr1 18089875 18090225 -179105207 - RLTR10D LTR ERVK 0 359 1 1 723 15422 98 5 2 chr1 18090227 18093225 -179102207 + L1_Mus1 LINE L1 3559 6566 -1 1 723 1180 189 45 0 chr1 18093300 18093591 -179101841 - L1_Mur3 LINE L1 -2185 3695 3392 1 723 652 181 79 0 chr1 18093656 18093783 -179101649 - B1_Mur3 SINE Alu -12 137 1 1 723 3256 195 94 75 chr1 18093783 18093938 -179101494 - L1_Mur3 LINE L1 -2862 3018 2880 1 723 198 0 0 0 chr1 18093938 18093960 -179101472 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 723 954 118 15 0 chr1 18093960 18094095 -179101337 - B1_Mus1 SINE Alu -10 138 2 1 723 3256 195 94 75 chr1 18094095 18095024 -179100408 - L1_Mur3 LINE L1 -3001 2879 1914 1 723 523 324 149 103 chr1 18095322 18095907 -179099525 + RLTR18 LTR ERVK 1 612 -4 1 723 423 0 0 0 chr1 18095933 18095980 -179099452 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 723 22 0 0 0 chr1 18096785 18096807 -179098625 + AT_rich Low_complexity Low_complexity 1 22 0 1 723 1497 128 31 11 chr1 18097769 18098030 -179097402 + L1VL1 LINE L1 1 266 -6156 1 723 29567 99 38 2 chr1 18098030 18099842 -179095590 + L1Md_F2 LINE L1 480 2346 -3537 1 723 291 28 0 0 chr1 18099842 18099878 -179095554 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 723 29567 85 7 3 chr1 18099878 18103093 -179092339 + L1Md_F2 LINE L1 2347 5588 -295 1 723 7656 69 2 2 chr1 18103095 18104086 -179091346 + L1Md_F2 LINE L1 5592 6582 0 1 723 510 17 0 0 chr1 18104254 18104313 -179091119 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 1 723 1335 34 11 6 chr1 18104701 18104879 -179090553 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 723 232 151 109 36 chr1 18106020 18106075 -179089357 - BLACKJACK DNA AcHobo -1229 1715 1657 1 723 2095 187 21 34 chr1 18106248 18106719 -179088713 - Lx4B LINE L1 -4 7054 6590 1 723 3373 80 11 2 chr1 18106999 18107461 -179087971 + L1_Mus2 LINE L1 6100 6565 -1 1 723 361 330 31 31 chr1 18107809 18108000 -179087432 + L1MEf LINE L1 1394 1584 -4616 1 723 21 57 0 0 chr1 18108130 18108165 -179087267 + AT_rich Low_complexity Low_complexity 1 35 0 1 723 1605 42 0 16 chr1 18108525 18108719 -179086713 + B2_Mm1t SINE B2 2 192 -1 1 723 696 277 137 33 chr1 18108752 18109174 -179086258 + L1M2 LINE L1 2133 2598 -3545 1 723 57 66 0 0 chr1 18109288 18109394 -179086038 + AT_rich Low_complexity Low_complexity 1 106 0 1 723 234 0 0 0 chr1 18109537 18109563 -179085869 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 1 723 203 231 0 30 chr1 18109563 18109630 -179085802 + CT-rich Low_complexity Low_complexity 2 66 0 1 723 319 261 58 36 chr1 18109691 18109830 -179085602 - L1M3 LINE L1 -1332 4808 4667 1 723 911 295 49 41 chr1 18110080 18110930 -179084502 - Lx9 LINE L1 -1023 6450 5557 1 723 6621 155 61 7 chr1 18111021 18112385 -179083047 + Lx3C LINE L1 5519 6974 -2 1 723 1273 104 11 0 chr1 18113469 18113652 -179081780 - B2_Mm1t SINE B2 -7 186 2 1 723 232 263 40 0 chr1 18113812 18113888 -179081544 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 723 375 308 46 0 chr1 18114505 18114635 -179080797 + B3A SINE B2 6 141 -57 1 723 465 97 0 0 chr1 18114654 18114726 -179080706 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 723 200 77 18 55 chr1 18115099 18115154 -179080278 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 723 251 292 52 10 chr1 18115181 18115278 -179080154 + MIRc SINE MIR 119 219 -49 1 723 422 215 14 20 chr1 18115384 18115531 -179079901 + CT-rich Low_complexity Low_complexity 2 147 0 1 723 273 245 108 0 chr1 18116015 18116117 -179079315 - Lx9 LINE L1 -9 7635 7523 1 723 22 56 0 0 chr1 18116632 18116668 -179078764 + AT_rich Low_complexity Low_complexity 1 36 0 1 723 254 267 36 36 chr1 18116916 18117083 -179078349 + L1M4 LINE L1 4330 4496 -1650 1 723 486 358 52 8 chr1 18117155 18117521 -179077911 + L1M2 LINE L1 5349 5730 -561 1 723 1537 103 5 0 chr1 18118055 18118269 -179077163 + L1_Mus2 LINE L1 6351 6565 -1 1 723 833 287 231 0 chr1 18120659 18120997 -179074435 + MTD LTR MaLR 2 417 -2 1 723 839 166 197 17 chr1 18121289 18121467 -179073965 - B3 SINE B2 -5 211 2 1 723 6381 67 5 1 chr1 18122070 18122891 -179072541 + L1_Mus2 LINE L1 5702 6525 -41 1 723 320 330 9 80 chr1 18123184 18123296 -179072136 - B1F SINE Alu -45 104 1 1 723 782 195 216 0 chr1 18123494 18123679 -179071753 - URR1B DNA MER1_type 0 225 1 1 723 222 150 0 0 chr1 18124651 18124691 -179070741 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 723 222 195 0 0 chr1 18126165 18126206 -179069226 + (CAT)n Simple_repeat Simple_repeat 3 43 0 1 723 260 299 12 49 chr1 18126210 18126291 -179069141 - ID4 SINE ID -4 79 2 1 723 1053 153 17 6 chr1 18126771 18126949 -179068483 + B2_Mm2 SINE B2 2 181 -14 1 723 20099 85 5 2 chr1 18128090 18131684 -179063748 - L1Md_F LINE L1 -1838 4045 442 1 723 226 329 79 20 chr1 18133834 18133986 -179061446 - Lx8 LINE L1 -375 7098 6938 1 723 380 326 157 26 chr1 18134168 18134436 -179060996 + L1M5 LINE L1 4695 4997 -1149 1 723 540 309 0 0 chr1 18135153 18135318 -179060114 + L1M2 LINE L1 5534 5698 -593 1 723 207 69 0 0 chr1 18136334 18136363 -179059069 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 723 432 296 65 90 chr1 18136436 18136726 -179058706 - B4A SINE B4 -7 285 3 1 723 474 101 0 0 chr1 18137304 18137373 -179058059 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 1 723 582 93 0 0 chr1 18137523 18137609 -179057823 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 1 723 204 267 27 0 chr1 18137617 18137692 -179057740 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 723 207 260 0 0 chr1 18137637 18137687 -179057745 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 723 28 29 0 0 chr1 18137735 18137770 -179057662 + AT_rich Low_complexity Low_complexity 1 35 0 1 723 17891 121 16 4 chr1 18138969 18142572 -179052860 - L1_Mus3 LINE L1 -3 6635 2984 1 723 1837 113 9 56 chr1 18142572 18142910 -179052522 + RLTRETN_Mm LTR ERVK 1 322 0 1 723 13354 196 13 161 chr1 18142910 18146219 -179049213 - L1_Mus3 LINE L1 -2866 3014 728 1 723 3474 18 2 0 chr1 18146219 18146614 -179048818 - MTA_Mm LTR MaLR 0 396 1 1 723 8873 40 6 2 chr1 18146614 18147708 -179047724 - MTA_Mm-int LTR MaLR 0 1098 1 1 723 3474 18 2 0 chr1 18147708 18148103 -179047329 - MTA_Mm LTR MaLR 0 396 1 1 723 4376 117 8 39 chr1 18148103 18148199 -179047233 - L1_Mus3 LINE L1 -5911 727 634 1 723 34 24 0 0 chr1 18148535 18148576 -179046856 + AT_rich Low_complexity Low_complexity 1 41 0 1 723 608 265 54 0 chr1 18148935 18149082 -179046350 + B3A SINE B2 1 155 -43 1 723 1335 184 91 2 chr1 18149088 18149506 -179045926 + RMER17B LTR ERVK 446 957 -1 1 723 307 270 123 31 chr1 18150587 18150717 -179044715 - HAL1-3A_ME LINE L1 -741 2117 1976 1 723 521 348 53 30 chr1 18150867 18151256 -179044176 - Lx8 LINE L1 -306 7167 6748 1 723 310 319 77 22 chr1 18151310 18151493 -179043939 - Lx8 LINE L1 -1181 6292 6100 1 723 277 296 86 69 chr1 18151553 18151669 -179043763 - B3 SINE B2 -1 215 98 1 723 186 71 0 0 chr1 18151679 18151707 -179043725 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1 723 261 371 20 10 chr1 18152329 18152427 -179043005 + PB1 SINE Alu 13 111 -16 1 723 279 150 0 0 chr1 18152922 18152982 -179042450 + (A)n Simple_repeat Simple_repeat 1 60 0 2 723 359 293 76 45 chr1 18153058 18153215 -179042217 + RSINE1 SINE B4 4 165 0 2 723 206 62 0 30 chr1 18153908 18153941 -179041491 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 2 723 607 122 23 39 chr1 18154020 18154148 -179041284 - L1_Mus3 LINE L1 -2 6636 6511 2 723 2778 82 42 0 chr1 18154147 18154524 -179040908 + L1_Mus2 LINE L1 6174 6566 0 2 723 21 0 0 0 chr1 18154537 18154558 -179040874 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 22 0 0 0 chr1 18154592 18154614 -179040818 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 655 65 18 18 chr1 18154757 18154867 -179040565 + (TCTCTG)n Simple_repeat Simple_repeat 3 112 0 2 723 180 0 0 0 chr1 18154868 18154888 -179040544 + (T)n Simple_repeat Simple_repeat 1 20 0 2 723 998 122 0 0 chr1 18154888 18155036 -179040396 - B1_Mus1 SINE Alu 0 148 1 2 723 304 157 14 28 chr1 18155304 18155376 -179040056 + T-rich Low_complexity Low_complexity 4 74 0 2 723 2102 142 12 3 chr1 18155383 18155728 -179039704 - Lx LINE L1 -7 6647 6300 2 723 1501 105 18 0 chr1 18155741 18155960 -179039472 - Lx LINE L1 -630 6024 5802 2 723 3908 148 25 9 chr1 18155951 18156621 -179038811 + Lx LINE L1 5128 5808 -75 2 723 815 119 15 0 chr1 18156623 18156757 -179038675 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 2 723 21 57 0 0 chr1 18157142 18157177 -179038255 + AT_rich Low_complexity Low_complexity 1 35 0 2 723 311 289 56 0 chr1 18157338 18157428 -179038004 + MER67C LTR ERV1 307 401 -310 2 723 333 47 0 0 chr1 18159145 18159188 -179036244 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2 723 1194 246 52 37 chr1 18159556 18159881 -179035551 - MTE2a LTR MaLR -49 330 1 2 723 470 356 7 0 chr1 18160075 18160210 -179035222 - B1F1 SINE Alu -5 144 9 2 723 360 0 0 0 chr1 18160216 18160256 -179035176 + (ATTG)n Simple_repeat Simple_repeat 4 43 0 2 723 2119 157 51 60 chr1 18160259 18160692 -179034740 + RLTR23 LTR ERV1 1 429 -1 2 723 1994 139 94 57 chr1 18160692 18161097 -179034335 - RLTR9B2 LTR ERVK 0 420 1 2 723 943 135 7 7 chr1 18161213 18161362 -179034070 - RLTR13D5 LTR ERVK 0 1023 875 2 723 1004 54 8 0 chr1 18161361 18161491 -179033941 + B1_Mm SINE Alu 17 147 0 2 723 194 0 39 0 chr1 18161505 18161531 -179033901 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 723 6478 75 2 14 chr1 18161531 18162400 -179033032 - RLTR13D5 LTR ERVK -164 859 1 2 723 339 333 67 0 chr1 18162421 18162526 -179032906 + Lx8 LINE L1 7041 7152 -321 2 723 572 269 79 25 chr1 18162549 18162789 -179032643 + Lx8 LINE L1 7220 7472 -1 2 723 25 75 0 0 chr1 18162816 18162869 -179032563 + AT_rich Low_complexity Low_complexity 1 53 0 2 723 257 346 47 0 chr1 18162950 18163057 -179032375 - PB1D10 SINE Alu -5 112 1 2 723 333 252 65 32 chr1 18163070 18163186 -179032246 + MER63D DNA AcHobo 140 259 -802 2 723 561 307 125 19 chr1 18163186 18163402 -179032030 + Tigger5 DNA MER2_type 2 240 -2166 2 723 358 242 20 20 chr1 18164139 18164240 -179031192 + MER2 DNA MER2_type 97 197 -148 2 723 704 280 48 11 chr1 18164264 18164452 -179030980 + B3A SINE B2 1 195 -3 2 723 384 281 55 147 chr1 18164469 18164707 -179030725 + B3 SINE B2 1 216 0 2 723 597 105 0 19 chr1 18165143 18165250 -179030182 + L1_Mus1 LINE L1 6462 6566 -1 2 723 207 70 45 23 chr1 18165395 18165439 -179029993 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 2 723 1824 260 59 18 chr1 18166595 18167209 -179028223 - Lx7 LINE L1 -1437 6259 5621 2 723 1138 108 11 17 chr1 18167219 18167397 -179028035 - B2_Mm1t SINE B2 -8 185 9 2 723 754 222 0 155 chr1 18167399 18167644 -179027788 - Lx7 LINE L1 -274 5606 5400 2 723 3978 176 153 21 chr1 18167642 18168137 -179027295 - Lx7 LINE L1 -2194 3686 3164 2 723 4027 33 4 2 chr1 18168137 18168620 -179026812 - L1Md_F3 LINE L1 -1 6583 6100 2 723 3978 176 153 21 chr1 18168620 18169219 -179026213 - Lx7 LINE L1 -2717 3163 2449 2 723 2081 190 25 26 chr1 18169215 18170103 -179025329 - Lx7 LINE L1 -4203 1677 792 2 723 825 150 0 8 chr1 18172360 18172494 -179022938 + B1_Mus1 SINE Alu 1 133 -15 2 723 666 0 0 0 chr1 18172519 18172593 -179022839 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 723 25 31 0 0 chr1 18172805 18172837 -179022595 + AT_rich Low_complexity Low_complexity 1 32 0 2 723 4103 103 51 0 chr1 18172839 18173430 -179022002 - L1_Mus2 LINE L1 0 6566 5946 2 723 3773 106 236 5 chr1 18173430 18174087 -179021345 + L1_Mus2 LINE L1 5075 5883 0 2 723 618 292 29 10 chr1 18174564 18174768 -179020664 - B3 SINE B2 -8 208 1 2 723 724 219 20 7 chr1 18175196 18175343 -179020089 - B1_Mur2 SINE Alu 0 149 1 2 723 475 375 27 14 chr1 18175827 18176049 -179019383 - RMER15 LTR ERVL -14 561 337 2 723 22 0 0 0 chr1 18176605 18176627 -179018805 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 218 116 0 23 chr1 18176821 18176865 -179018567 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 723 25 31 0 0 chr1 18176983 18177015 -179018417 + AT_rich Low_complexity Low_complexity 1 32 0 2 723 33 0 0 0 chr1 18177134 18177167 -179018265 + AT_rich Low_complexity Low_complexity 1 33 0 2 723 340 159 12 24 chr1 18177275 18177332 -179018100 + polypurine Low_complexity Low_complexity 2 59 0 2 723 1059 117 0 16 chr1 18177332 18177515 -179017917 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 723 340 159 12 24 chr1 18177515 18177541 -179017891 + polypurine Low_complexity Low_complexity 60 83 0 2 723 242 212 25 12 chr1 18177645 18177726 -179017706 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 2 723 321 299 11 0 chr1 18177768 18177855 -179017577 - B1_Mur2 SINE Alu -26 123 36 2 723 207 146 0 0 chr1 18178103 18178144 -179017288 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 723 26 50 0 0 chr1 18178227 18178267 -179017165 + AT_rich Low_complexity Low_complexity 1 40 0 2 723 797 230 22 49 chr1 18178485 18178709 -179016723 + RMER17C-int LTR ERVK 2652 2869 -369 2 723 2458 141 22 77 chr1 18178725 18179180 -179016252 + RLTR23 LTR ERV1 1 430 0 2 723 417 109 0 0 chr1 18179183 18179247 -179016185 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 723 226 0 59 0 chr1 18179249 18179283 -179016149 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 723 516 286 71 0 chr1 18179286 18179468 -179015964 + RMER17C-int LTR ERVK 2902 3096 -142 2 723 832 156 0 27 chr1 18179739 18179924 -179015508 + CT-rich Low_complexity Low_complexity 1 180 0 2 723 418 368 37 41 chr1 18181377 18181621 -179013811 - LFSINE_Vert SINE SINE -18 441 199 2 723 24 0 0 0 chr1 18182291 18182315 -179013117 + AT_rich Low_complexity Low_complexity 1 24 0 2 723 233 209 0 44 chr1 18182609 18182654 -179012778 - B1F SINE Alu -12 137 95 2 723 1065 180 104 135 chr1 18182661 18183034 -179012398 - RMER17C LTR ERVK 0 410 44 2 723 4293 45 2 8 chr1 18183034 18183549 -179011883 + LTRIS3 LTR ERV1 1 512 0 2 723 1065 180 104 135 chr1 18183549 18183598 -179011834 - RMER17C LTR ERVK -367 43 1 2 723 1766 120 72 198 chr1 18183612 18184101 -179011331 - RLTR23 LTR ERV1 -3 427 1 2 723 411 38 0 0 chr1 18184165 18184218 -179011214 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 723 632 365 11 0 chr1 18184322 18184511 -179010921 + B3 SINE B2 1 191 -25 2 723 306 0 0 0 chr1 18184513 18184547 -179010885 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 723 21 36 0 0 chr1 18184616 18184644 -179010788 + AT_rich Low_complexity Low_complexity 1 28 0 2 723 2401 200 35 8 chr1 18184731 18185335 -179010097 - Lx4B LINE L1 -7 6993 6346 2 723 1133 137 97 46 chr1 18185334 18185373 -179010059 - L1_Mur2 LINE L1 -979 4898 4860 2 723 246 32 0 0 chr1 18185373 18185404 -179010028 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 723 1133 137 97 46 chr1 18185404 18185602 -179009830 - L1_Mur2 LINE L1 -1018 4859 4649 2 723 1068 117 39 11 chr1 18185630 18185812 -179009620 - Lx2 LINE L1 0 6997 6811 2 723 41 0 0 0 chr1 18185900 18185941 -179009491 + AT_rich Low_complexity Low_complexity 1 41 0 2 723 627 285 75 0 chr1 18185948 18186148 -179009284 - B3 SINE B2 -1 215 1 2 723 208 390 73 32 chr1 18186944 18187164 -179008268 - L2a LINE L2 -265 3161 2933 2 723 297 128 0 0 chr1 18187255 18187302 -179008130 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 723 26 30 0 0 chr1 18187713 18187746 -179007686 + AT_rich Low_complexity Low_complexity 1 33 0 2 723 1555 181 0 4 chr1 18188593 18188616 -179006816 - RLTR22_Mur LTR ERVK 0 1848 1826 2 723 279 0 0 0 chr1 18188616 18188647 -179006785 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 723 1555 181 0 4 chr1 18188647 18188894 -179006538 - RLTR22_Mur LTR ERVK -23 1825 1580 2 723 4602 151 15 10 chr1 18189080 18189887 -179005545 - RLTR22_Mur LTR ERVK -1035 813 3 2 723 580 259 38 43 chr1 18190484 18190694 -179004738 - Lx9 LINE L1 -602 7042 6834 2 723 381 279 76 76 chr1 18190719 18190876 -179004556 + Lx9 LINE L1 7304 7473 -171 2 723 216 0 0 0 chr1 18190876 18190900 -179004532 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 723 381 279 76 76 chr1 18190900 18191083 -179004349 + Lx9 LINE L1 7474 7643 -1 2 723 30 45 0 0 chr1 18192065 18192109 -179003323 + AT_rich Low_complexity Low_complexity 1 44 0 2 723 22 0 0 0 chr1 18192194 18192216 -179003216 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 30 45 0 0 chr1 18193161 18193205 -179002227 + AT_rich Low_complexity Low_complexity 1 44 0 2 723 1563 255 32 32 chr1 18194542 18194943 -179000489 - MTC LTR MaLR 0 421 21 2 723 25 31 0 0 chr1 18196135 18196167 -178999265 + AT_rich Low_complexity Low_complexity 1 32 0 2 723 450 0 0 0 chr1 18196856 18196906 -178998526 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 723 276 400 50 25 chr1 18197006 18197165 -178998267 - B4 SINE B4 -4 288 126 2 723 1066 72 7 0 chr1 18197172 18197310 -178998122 - B2_Mm2 SINE B2 -56 139 1 2 723 441 278 19 5 chr1 18197525 18197734 -178997698 - L1_Mur3 LINE L1 -819 5484 5261 2 723 3017 79 0 2 chr1 18198071 18198466 -178996966 + L1_Mus2 LINE L1 6169 6562 -4 2 723 210 174 0 0 chr1 18200751 18200797 -178994635 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 2 723 237 182 0 0 chr1 18200865 18200920 -178994512 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 723 21 36 0 0 chr1 18200960 18200988 -178994444 + AT_rich Low_complexity Low_complexity 1 28 0 2 723 238 380 0 0 chr1 18201616 18201687 -178993745 - ID4_ SINE ID -11 72 2 2 723 4045 99 3 2 chr1 18202885 18203449 -178991983 - L1_Mus4 LINE L1 -4 6632 6068 2 723 361 326 14 0 chr1 18204073 18204220 -178991212 - RLTR45-int LTR ERVK -6915 329 181 2 723 5894 136 12 7 chr1 18204767 18206003 -178989429 - L1_Mus3 LINE L1 -527 6111 4867 3 723 30196 92 40 11 chr1 18206011 18211236 -178984196 + L1Md_F2 LINE L1 206 5589 -297 3 723 7051 99 0 24 chr1 18211236 18212256 -178983176 + L1Md_F2 LINE L1 5590 6585 0 3 723 334 88 29 0 chr1 18212271 18212339 -178983093 + (TTTTTG)n Simple_repeat Simple_repeat 4 73 0 3 723 594 124 0 62 chr1 18212341 18212453 -178982979 - L1_Mm LINE L1 -1012 4871 4767 3 723 2377 126 5 0 chr1 18212451 18212823 -178982609 + L1_Mm LINE L1 4426 4799 -1084 3 723 261 299 62 87 chr1 18214416 18214577 -178980855 + RNLTR23 LTR ERVK 486 642 0 3 723 208 382 38 0 chr1 18215669 18215800 -178979632 - MIR SINE MIR -57 205 70 3 723 278 281 29 59 chr1 18216878 18216980 -178978452 + PB1 SINE Alu 21 119 -8 3 723 446 301 75 38 chr1 18216980 18217139 -178978293 + RSINE1 SINE B4 1 165 0 3 723 418 212 12 18 chr1 18217172 18217335 -178978097 + (CA)n Simple_repeat Simple_repeat 2 163 0 3 723 240 137 0 0 chr1 18217465 18217516 -178977916 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 723 804 113 56 67 chr1 18217824 18218004 -178977428 - Lx3A LINE L1 -2 6979 6802 3 723 954 326 32 32 chr1 18218167 18218567 -178976865 - Lx9 LINE L1 -485 7159 6760 3 90 1157 287 98 68 chr1 18218610 18219693 -178975739 - L1_Mur3 LINE L1 -6784 928 19 3 724 727 218 33 23 chr1 18219694 18219904 -178975528 - B2_Mm2 SINE B2 0 216 2 3 724 409 240 30 44 chr1 18220710 18220845 -178974587 - Lx6 LINE L1 -8 7452 7320 3 724 27 49 0 0 chr1 18221757 18221798 -178973634 + AT_rich Low_complexity Low_complexity 1 41 0 3 724 3317 113 64 13 chr1 18222279 18222807 -178972625 - Lx LINE L1 -1 6653 6099 3 724 29 70 0 0 chr1 18222959 18223016 -178972416 + AT_rich Low_complexity Low_complexity 1 57 0 3 724 27 0 0 0 chr1 18223081 18223108 -178972324 + AT_rich Low_complexity Low_complexity 1 27 0 3 724 1730 132 32 0 chr1 18223109 18223389 -178972043 - Lx3A LINE L1 -7 6974 6686 3 724 211 380 0 12 chr1 18223660 18223740 -178971692 - ID2 SINE ID 0 83 5 3 724 24 53 0 0 chr1 18224142 18224180 -178971252 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 23 33 0 0 chr1 18224349 18224379 -178971053 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 2966 223 56 62 chr1 18224629 18225500 -178969932 - Lx7 LINE L1 0 7696 6831 3 724 315 49 0 0 chr1 18225564 18225605 -178969827 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 724 433 0 35 0 chr1 18225605 18225661 -178969771 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 724 968 94 185 16 chr1 18226230 18226414 -178969018 + Lx2 LINE L1 6778 6992 -5 3 724 582 128 0 0 chr1 18226800 18226894 -178968538 + (TGGA)n Simple_repeat Simple_repeat 4 97 0 3 724 429 36 0 0 chr1 18227859 18227914 -178967518 + (CCTA)n Simple_repeat Simple_repeat 4 58 0 3 724 360 134 36 12 chr1 18228169 18228252 -178967180 + CT-rich Low_complexity Low_complexity 3 87 0 3 724 289 246 18 0 chr1 18228257 18228314 -178967118 - ID4_ SINE ID -2 81 24 3 724 282 205 45 124 chr1 18228258 18228347 -178967085 - ID SINE ID -141 83 2 3 724 369 312 125 91 chr1 18231586 18231762 -178963670 + MTD LTR MaLR 6 210 -209 3 724 484 258 61 23 chr1 18231769 18231900 -178963532 + B1_Mur1 SINE Alu 7 142 -7 3 724 402 287 52 8 chr1 18231942 18232104 -178963328 + MTD LTR MaLR 207 399 -20 3 724 2493 222 19 25 chr1 18232735 18233247 -178962185 + Lx5 LINE L1 6505 7013 -37 3 724 277 333 32 11 chr1 18233596 18233690 -178961742 - PB1D10 SINE Alu -21 96 1 3 724 224 362 9 8 chr1 18234054 18234179 -178961253 - ID2 SINE ID -21 131 6 3 724 22 0 0 0 chr1 18235053 18235075 -178960357 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 830 252 30 25 chr1 18235468 18235704 -178959728 - RLTR20C LTR ERVK -6 528 292 3 724 1786 142 82 85 chr1 18235705 18236129 -178959303 - RLTR45 LTR ERVK 0 482 60 3 724 3436 175 11 105 chr1 18236204 18236996 -178958436 - RLTR13D6 LTR ERVK -184 718 1 3 724 304 171 27 12 chr1 18236996 18237067 -178958365 - RLTR20C LTR ERVK -511 67 1 3 724 582 150 10 29 chr1 18237144 18237247 -178958185 + B1_Mur4 SINE Alu 42 142 -8 3 724 353 252 80 15 chr1 18237885 18238022 -178957410 + RMER5 LTR ERV1 128 273 -261 3 724 262 264 125 18 chr1 18238053 18238165 -178957267 + RMER5 LTR ERV1 314 437 -97 3 724 1206 101 28 0 chr1 18239612 18239791 -178955641 - B2_Mm1t SINE B2 -9 184 1 3 724 1479 308 20 26 chr1 18239956 18240446 -178954986 - Lx6 LINE L1 -27 7433 6947 3 724 292 211 165 52 chr1 18240513 18240628 -178954804 + RSINE1 SINE B4 38 165 0 3 724 395 107 0 13 chr1 18240639 18240715 -178954717 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 724 189 0 0 0 chr1 18240721 18240742 -178954690 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 3 724 880 109 47 0 chr1 18240806 18240934 -178954498 + B1_Mus1 SINE Alu 2 135 -13 3 724 257 0 30 0 chr1 18240936 18240969 -178954463 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 724 328 327 39 35 chr1 18240977 18241180 -178954252 + L1M5 LINE L1 5606 5809 -370 3 724 430 233 22 52 chr1 18242019 18242155 -178953277 - Lx9 LINE L1 0 7644 7513 3 724 25 51 0 0 chr1 18242240 18242279 -178953153 + AT_rich Low_complexity Low_complexity 1 39 0 3 724 2289 125 92 29 chr1 18242561 18243006 -178952426 - IAPLTR2_Mm LTR ERVK 0 475 3 3 724 6191 32 3 19 chr1 18243010 18243766 -178951666 - IAPEz-int LTR ERVK -2 6479 5736 3 724 2091 60 41 0 chr1 18243765 18244032 -178951400 - IAPEz-int LTR ERVK -4845 1636 1359 3 724 3373 63 22 16 chr1 18244032 18244598 -178950834 - IAPEz-int LTR ERVK -5819 662 168 3 724 231 321 0 0 chr1 18244598 18244654 -178950778 - RLTR27 LTR ERVK -34 275 220 3 724 530 88 16 157 chr1 18244654 18244775 -178950657 - IAPEz-int LTR ERVK -6369 112 9 3 724 2312 122 92 29 chr1 18244776 18245223 -178950209 - IAPLTR2_Mm LTR ERVK 0 475 1 3 724 408 290 40 39 chr1 18245247 18245395 -178950037 - B4A SINE B4 -143 149 1 3 724 204 122 20 39 chr1 18245970 18246021 -178949411 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 3 724 204 40 0 0 chr1 18246024 18246049 -178949383 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 724 297 274 0 0 chr1 18246049 18246155 -178949277 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 724 1141 62 7 0 chr1 18246450 18246596 -178948836 - B1_Mm SINE Alu 0 147 1 3 724 402 21 0 0 chr1 18248180 18248227 -178947205 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 724 393 375 20 25 chr1 18249069 18249266 -178946166 + MER20 DNA MER1_type 24 219 0 3 724 333 0 0 0 chr1 18249453 18249490 -178945942 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 724 212 217 0 42 chr1 18251263 18251311 -178944121 + polypurine Low_complexity Low_complexity 6 51 0 3 724 318 50 0 0 chr1 18251895 18251935 -178943497 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 724 417 353 47 51 chr1 18253522 18253737 -178941695 - B3A SINE B2 -1 215 2 3 724 288 70 0 0 chr1 18254218 18254261 -178941171 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 3 724 21 0 0 0 chr1 18254261 18254282 -178941150 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 213 175 17 17 chr1 18255900 18255958 -178939474 + A-rich Low_complexity Low_complexity 3 60 0 3 724 229 357 149 0 chr1 18255970 18256124 -178939308 - MER5A DNA MER1_type -2 187 11 3 724 1283 229 140 72 chr1 18256566 18257184 -178938248 - RMER12 LTR ERVK -85 1237 375 3 724 4825 120 44 34 chr1 18257185 18257987 -178937445 - Lx2 LINE L1 0 6997 6188 3 724 3843 164 15 4 chr1 18257987 18258705 -178936727 + L1_Mur1 LINE L1 3042 3767 -2119 3 724 2556 135 27 29 chr1 18258714 18259156 -178936276 + RLTR13D6 LTR ERVK 10 450 -452 3 724 657 165 6 12 chr1 18259157 18259291 -178936141 + L1_Mur1 LINE L1 3725 3855 -1992 3 724 1994 168 13 24 chr1 18259293 18259672 -178935760 - RMER12 LTR ERVK -947 375 1 3 724 299 310 35 0 chr1 18259691 18259778 -178935654 - L1M3e LINE L1 -5196 1834 1745 3 724 450 200 27 0 chr1 18259860 18259970 -178935462 + Lx5 LINE L1 6935 7047 -3 3 724 305 235 157 50 chr1 18260146 18260246 -178935186 - Lx8 LINE L1 -75 7398 7285 3 724 2060 112 20 58 chr1 18260246 18260588 -178934844 + ORR1A4 LTR MaLR 1 329 0 3 724 305 235 157 50 chr1 18260588 18260608 -178934824 - Lx8 LINE L1 -189 7284 7265 3 724 1718 302 132 8 chr1 18260685 18261397 -178934035 - Lx8 LINE L1 -219 7254 6455 3 724 351 44 0 0 chr1 18261441 18261486 -178933946 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 724 360 0 0 0 chr1 18264002 18264042 -178931390 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 724 7240 111 10 0 chr1 18264913 18265998 -178929434 + L1_Mus4 LINE L1 5529 6624 -12 3 724 6746 243 82 32 chr1 18266007 18266368 -178929064 + Lx7 LINE L1 1259 1689 -4191 3 724 180 0 0 0 chr1 18266368 18266388 -178929044 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 724 6746 178 60 39 chr1 18266388 18267998 -178927434 + Lx7 LINE L1 1690 3333 -2547 3 724 696 136 9 0 chr1 18267997 18268107 -178927325 - L1_Mus3 LINE L1 -265 6301 6191 3 724 2229 103 9 21 chr1 18268108 18268446 -178926986 + L1_Mus3 LINE L1 6303 6636 -2 3 724 505 141 0 12 chr1 18268446 18268532 -178926900 - Lx2 LINE L1 -1227 5770 5686 3 724 1791 125 62 0 chr1 18268532 18268820 -178926612 + Lx3A LINE L1 6667 6972 -9 3 724 28 48 0 0 chr1 18268822 18268864 -178926568 + AT_rich Low_complexity Low_complexity 1 42 0 3 724 2697 196 51 20 chr1 18268864 18269449 -178925983 + Lx3C LINE L1 6372 6974 -2 3 724 9703 189 68 45 chr1 18269469 18269613 -178925819 + Lx7 LINE L1 3329 3486 -2394 3 724 209 83 28 0 chr1 18269613 18269649 -178925783 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 724 9703 189 68 45 chr1 18269649 18270755 -178924677 + Lx7 LINE L1 3487 4671 -1209 3 724 378 0 0 0 chr1 18270755 18270797 -178924635 + (TTA)n Simple_repeat Simple_repeat 3 44 0 3 724 9703 196 66 44 chr1 18270797 18272252 -178923180 + Lx7 LINE L1 4672 6105 -1591 3 724 4691 138 126 63 chr1 18272252 18273215 -178922217 - RLTR13D2 LTR ERVK 0 1023 1 3 724 4839 232 55 41 chr1 18273215 18273270 -178922162 + Lx7 LINE L1 6106 6160 -1536 3 724 423 38 0 0 chr1 18273270 18273323 -178922109 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 724 4839 232 55 41 chr1 18273323 18274126 -178921306 + Lx7 LINE L1 6161 6975 -721 3 724 619 220 104 9 chr1 18274133 18274353 -178921079 + Lx7 LINE L1 7445 7685 -11 3 724 317 200 30 15 chr1 18274442 18274508 -178920924 + RLTR20B3 LTR ERVK 1 67 -510 3 724 365 209 16 15 chr1 18274501 18274585 -178920847 + RLTR20B3 LTR ERVK 474 565 -12 3 724 855 241 90 39 chr1 18274953 18275186 -178920246 + Lx4A LINE L1 6805 7049 -9 3 724 302 257 149 9 chr1 18275195 18275309 -178920123 - HAL1-3A_ME LINE L1 -445 2413 2284 3 724 470 92 0 26 chr1 18275309 18275387 -178920045 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 3 724 4076 150 62 41 chr1 18275397 18275659 -178919773 - Lx3C LINE L1 -3 6970 6771 3 724 378 0 0 0 chr1 18275659 18275701 -178919731 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 724 4076 145 72 19 chr1 18275701 18276256 -178919176 - Lx3C LINE L1 -206 6770 6184 3 724 234 62 0 0 chr1 18276259 18276291 -178919141 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 724 963 198 0 6 chr1 18276317 18276490 -178918942 + MTC LTR MaLR 196 367 -54 3 724 915 312 108 6 chr1 18276504 18276839 -178918593 - MTD LTR MaLR -28 391 23 4 724 508 252 42 0 chr1 18278297 18278440 -178916992 + B1F SINE Alu 1 149 0 4 724 1075 96 7 0 chr1 18278675 18278821 -178916611 - B1_Mus2 SINE Alu 0 147 1 4 724 423 0 0 0 chr1 18278901 18278948 -178916484 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 724 213 348 0 29 chr1 18279467 18279535 -178915897 + ID4_ SINE ID 5 70 -13 4 724 183 80 0 0 chr1 18279541 18279566 -178915866 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 4 724 301 291 223 0 chr1 18279738 18279910 -178915522 + B3 SINE B2 5 214 -2 4 724 691 235 68 21 chr1 18280244 18280435 -178914997 + B3 SINE B2 17 216 0 4 724 952 113 0 15 chr1 18280458 18280593 -178914839 - B1_Mur4 SINE Alu -13 137 5 4 724 396 40 0 0 chr1 18282429 18282479 -178912953 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 724 322 377 74 25 chr1 18283513 18283837 -178911595 - L1ME3A LINE L1 -186 5987 5648 4 724 624 94 0 0 chr1 18284280 18284386 -178911046 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 724 378 0 0 0 chr1 18284386 18284428 -178911004 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 724 363 287 37 9 chr1 18284543 18284652 -178910780 - B4 SINE B4 -74 218 107 4 724 1264 242 80 0 chr1 18284687 18285051 -178910381 - Lx9 LINE L1 0 7644 7252 4 724 306 73 0 0 chr1 18285608 18285649 -178909783 + (CCA)n Simple_repeat Simple_repeat 2 42 0 4 724 348 148 0 0 chr1 18285647 18285708 -178909724 + (TCC)n Simple_repeat Simple_repeat 2 62 0 4 724 369 109 0 0 chr1 18287124 18287179 -178908253 + (A)n Simple_repeat Simple_repeat 1 55 0 4 724 239 171 64 61 chr1 18287277 18287352 -178908080 - MLT1H LTR MaLR -2 547 412 4 724 205 315 102 85 chr1 18288680 18288857 -178906575 + MIR SINE MIR 39 218 -50 4 724 8260 37 0 0 chr1 18289007 18289989 -178905443 - L1Md_T LINE L1 0 6582 5601 4 724 273 109 0 0 chr1 18291097 18291143 -178904289 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 4 724 1510 173 17 119 chr1 18291830 18292184 -178903248 + ORR1A3 LTR MaLR 1 318 -8 4 724 1427 79 0 19 chr1 18293646 18293852 -178901580 + L1Md_F2 LINE L1 6370 6571 -11 4 724 209 224 0 17 chr1 18294818 18294877 -178900555 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 724 189 0 0 0 chr1 18298757 18298778 -178896654 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 724 23 54 0 0 chr1 18299396 18299433 -178895999 + AT_rich Low_complexity Low_complexity 1 37 0 4 724 402 134 0 0 chr1 18300921 18300988 -178894444 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 724 29 0 0 0 chr1 18301878 18301907 -178893525 + AT_rich Low_complexity Low_complexity 1 29 0 4 724 2799 73 0 0 chr1 18302911 18303267 -178892165 - L1_Mus1 LINE L1 -1 6566 6211 4 724 2052 59 0 0 chr1 18303267 18303521 -178891911 + L1_Mus1 LINE L1 5916 6169 -398 4 724 24 32 0 0 chr1 18303620 18303651 -178891781 + AT_rich Low_complexity Low_complexity 1 31 0 4 724 237 164 68 68 chr1 18303975 18304034 -178891398 + RLTR28B LTR ERVL 309 367 -114 4 724 405 0 0 0 chr1 18304753 18304798 -178890634 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 724 369 0 0 0 chr1 18305461 18305502 -178889930 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 724 180 135 0 0 chr1 18305544 18305581 -178889851 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 724 3153 156 50 28 chr1 18305626 18306109 -178889323 - RMER6A LTR ERVK 0 756 252 4 724 1122 112 5 25 chr1 18306109 18306311 -178889121 + Lx3_Mus LINE L1 6812 7009 0 4 724 3153 150 457 22 chr1 18306311 18306493 -178888939 - RMER6A LTR ERVK -505 251 1 4 724 680 291 39 20 chr1 18307394 18307597 -178887835 - ID_B1 SINE B4 -6 218 12 4 724 21 36 0 0 chr1 18307690 18307718 -178887714 + AT_rich Low_complexity Low_complexity 1 28 0 4 724 3447 237 61 50 chr1 18308035 18308196 -178887236 - RLTR25B LTR ERVK 0 1028 812 4 724 375 23 0 0 chr1 18308196 18308240 -178887192 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 724 192 77 0 0 chr1 18308250 18308276 -178887156 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 4 724 3447 191 72 51 chr1 18308276 18308744 -178886688 - RLTR25B LTR ERVK -219 809 328 4 724 492 62 0 0 chr1 18308744 18308808 -178886624 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 724 3447 191 72 51 chr1 18308808 18309086 -178886346 - RLTR25B LTR ERVK -701 327 30 4 724 414 204 0 0 chr1 18309280 18309378 -178886054 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 724 251 86 0 0 chr1 18309378 18309413 -178886019 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 724 1378 274 11 39 chr1 18309674 18310107 -178885325 + Lx9 LINE L1 7012 7432 -212 4 724 244 194 99 80 chr1 18310154 18310232 -178885200 - RMER17A LTR ERVK -269 482 402 4 724 357 24 0 0 chr1 18310232 18310274 -178885158 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 724 244 194 99 80 chr1 18310274 18310346 -178885086 - RMER17A LTR ERVK -350 401 329 4 724 254 290 74 21 chr1 18310801 18310896 -178884536 + RLTR23 LTR ERV1 331 430 0 4 724 576 315 82 82 chr1 18312755 18312987 -178882445 - B4A SINE B4 -58 234 3 4 724 1816 227 53 145 chr1 18313065 18313956 -178881476 + RMER17B LTR ERVK 134 943 -15 4 724 485 256 33 0 chr1 18314180 18314301 -178881131 + ORR1D2 LTR MaLR 1 125 -245 4 724 2428 116 3 5 chr1 18314301 18314674 -178880758 + Lx LINE L1 6277 6648 -6 4 724 713 220 16 162 chr1 18314781 18315145 -178880287 + RLTRETN_Mm LTR ERVK 12 322 0 4 724 351 317 136 54 chr1 18315195 18315475 -178879957 - L1MC5 LINE L1 -969 6992 6690 4 724 319 221 163 75 chr1 18315834 18315975 -178879457 - B3 SINE B2 -2 193 40 4 724 5143 88 55 14 chr1 18315975 18316758 -178878674 + RLTR22_Mus LTR ERVK 1 815 -993 4 724 230 296 0 0 chr1 18316959 18317013 -178878419 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 724 362 261 90 0 chr1 18317031 18317165 -178878267 + L1MA4 LINE L1 5794 5939 -361 4 724 12018 180 36 7 chr1 18317262 18318856 -178876576 - L1_Mur2 LINE L1 -117 5760 4110 4 724 7975 89 24 67 chr1 18318856 18320002 -178875430 - Lx3_Mus LINE L1 -3 7006 5914 4 724 1274 73 6 0 chr1 18320002 18320181 -178875251 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 724 7975 89 24 67 chr1 18320181 18320335 -178875097 - Lx3_Mus LINE L1 -1096 5913 5762 4 724 12018 180 36 7 chr1 18320335 18321142 -178874290 - L1_Mur2 LINE L1 -1768 4109 3290 4 724 3569 216 18 10 chr1 18321164 18321870 -178873562 + Lx5 LINE L1 5896 6607 -443 4 724 1401 229 29 52 chr1 18321865 18322210 -178873222 + Lx5 LINE L1 6714 7050 0 4 724 23 54 0 0 chr1 18322259 18322296 -178873136 + AT_rich Low_complexity Low_complexity 1 37 0 4 724 1326 264 59 61 chr1 18322644 18322954 -178872478 + Lx6 LINE L1 7017 7322 -138 4 724 6214 69 1 10 chr1 18322954 18323775 -178871657 - L1Md_F2 LINE L1 0 6582 5769 4 724 1326 264 59 61 chr1 18323775 18323907 -178871525 + Lx6 LINE L1 7323 7458 -2 4 724 357 109 0 0 chr1 18323928 18323992 -178871440 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 724 389 390 45 0 chr1 18324005 18324159 -178871273 - B3A SINE B2 -36 162 2 4 724 255 220 22 11 chr1 18324343 18324435 -178870997 + CT-rich Low_complexity Low_complexity 2 94 0 4 724 3385 90 63 6 chr1 18324523 18325015 -178870417 + Lx3_Mus LINE L1 6490 7009 0 4 724 1119 62 0 14 chr1 18325482 18325630 -178869802 + B1_Mus1 SINE Alu 2 147 -1 4 724 211 28 27 27 chr1 18325631 18325668 -178869764 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 4 724 295 365 36 14 chr1 18325781 18325920 -178869512 + ORR1E LTR MaLR 1 142 -217 4 724 339 164 0 0 chr1 18326190 18326251 -178869181 + CT-rich Low_complexity Low_complexity 3 63 0 4 724 830 218 81 5 chr1 18328146 18328344 -178867088 + B3 SINE B2 4 216 0 4 724 630 0 0 0 chr1 18328431 18328501 -178866931 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 724 408 171 40 34 chr1 18328538 18328714 -178866718 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 4 724 242 261 0 0 chr1 18328726 18328795 -178866637 + GA-rich Low_complexity Low_complexity 2 70 0 4 724 610 133 31 8 chr1 18330047 18330176 -178865256 + Lx2A1 LINE L1 6860 6991 -17 4 724 333 100 0 0 chr1 18330178 18330228 -178865204 + (TAA)n Simple_repeat Simple_repeat 1 50 0 4 724 208 292 44 118 chr1 18330228 18330364 -178865068 + MIRm SINE MIR 28 153 -123 4 724 345 24 0 0 chr1 18331050 18331092 -178864340 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 724 1999 184 8 16 chr1 18331236 18331607 -178863825 - Lx4A LINE L1 -2 7056 6689 4 724 830 156 7 0 chr1 18331681 18331835 -178863597 + CT-rich Low_complexity Low_complexity 3 157 0 4 724 296 267 70 0 chr1 18331972 18332055 -178863377 - B1F SINE Alu -17 103 14 4 724 557 276 171 25 chr1 18332104 18332431 -178863001 - Lx9 LINE L1 0 7644 7270 4 724 22 0 0 0 chr1 18333287 18333309 -178862123 + AT_rich Low_complexity Low_complexity 1 22 0 4 724 30179 116 12 24 chr1 18333638 18339844 -178855588 + L1_Mus1 LINE L1 425 6567 0 4 724 825 179 21 32 chr1 18340054 18340244 -178855188 + Lx2 LINE L1 6810 6997 0 4 724 25 65 0 0 chr1 18341396 18341442 -178853990 + AT_rich Low_complexity Low_complexity 1 46 0 4 724 202 250 0 55 chr1 18341968 18342023 -178853409 + T-rich Low_complexity Low_complexity 2 53 0 4 724 519 17 0 0 chr1 18342025 18342085 -178853347 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 724 1359 67 0 0 chr1 18345004 18345183 -178850249 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 4 724 522 83 0 0 chr1 18345183 18345255 -178850177 + (TCCCC)n Simple_repeat Simple_repeat 4 75 0 4 724 462 120 0 0 chr1 18345249 18345324 -178850108 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 724 225 0 0 0 chr1 18345364 18345389 -178850043 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 724 1127 58 0 0 chr1 18345389 18345527 -178849905 - B1_Mus1 SINE Alu -10 138 1 4 724 445 198 45 60 chr1 18345675 18345874 -178849558 - RMER17C LTR ERVK -144 266 71 4 724 576 0 0 0 chr1 18346161 18346225 -178849207 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 4 724 284 315 14 0 chr1 18346230 18346303 -178849129 + ID4_ SINE ID 8 81 -2 4 724 1011 244 61 0 chr1 18346573 18346802 -178848630 - Lx5 LINE L1 -628 6422 6180 5 724 396 0 0 0 chr1 18347042 18347086 -178848346 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 724 194 156 0 22 chr1 18347122 18347168 -178848264 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 724 1868 199 12 56 chr1 18347371 18347639 -178847793 + ORR1B1 LTR MaLR 2 258 -136 5 724 1558 47 0 10 chr1 18347639 18347834 -178847598 - B2_Mm1a SINE B2 0 193 1 5 724 1868 199 12 56 chr1 18347834 18347877 -178847555 + ORR1B1 LTR MaLR 259 298 -96 5 724 2874 35 12 0 chr1 18347877 18348219 -178847213 - ORR1A1 LTR MaLR 0 346 1 5 724 1868 199 12 56 chr1 18348219 18348315 -178847117 + ORR1B1 LTR MaLR 299 392 -2 5 724 432 0 0 0 chr1 18348424 18348472 -178846960 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 724 1349 243 77 31 chr1 18348723 18348841 -178846591 + MTD LTR MaLR 1 123 -296 5 724 207 0 0 0 chr1 18348841 18348864 -178846568 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 724 1349 243 77 31 chr1 18348864 18349097 -178846335 + MTD LTR MaLR 124 368 -51 5 725 368 214 22 0 chr1 18350524 18350605 -178844827 + PB1D10 SINE Alu 5 89 -60 5 725 306 0 0 0 chr1 18350615 18350649 -178844783 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 725 249 33 0 0 chr1 18350760 18350790 -178844642 + (CCA)n Simple_repeat Simple_repeat 2 31 0 5 725 516 32 0 0 chr1 18350799 18350861 -178844571 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 725 24 0 0 0 chr1 18350870 18350894 -178844538 + AT_rich Low_complexity Low_complexity 1 24 0 5 725 202 324 103 0 chr1 18351060 18351128 -178844304 + MIR SINE MIR 1 75 -187 5 725 225 271 63 109 chr1 18351584 18351619 -178843813 + YREP_Mm Unknown Unknown 147 238 -1574 5 725 340 339 26 9 chr1 18351619 18351732 -178843700 - ID_B1 SINE B4 -1 223 109 5 725 225 271 63 109 chr1 18351732 18351758 -178843674 + YREP_Mm Unknown Unknown 239 312 -1500 5 725 22 35 0 0 chr1 18352337 18352366 -178843066 + AT_rich Low_complexity Low_complexity 1 29 0 5 725 1027 76 0 0 chr1 18353237 18353369 -178842063 + B1_Mus1 SINE Alu 5 136 -12 5 725 191 429 0 0 chr1 18353393 18353498 -178841934 - MIRb SINE MIR -125 143 39 5 725 360 176 0 0 chr1 18354381 18354449 -178840983 + (TCTCTG)n Simple_repeat Simple_repeat 5 72 0 5 725 22 35 0 0 chr1 18354886 18354915 -178840517 + AT_rich Low_complexity Low_complexity 1 29 0 5 725 2089 145 27 11 chr1 18354915 18355285 -178840147 - Lx3_Mus LINE L1 -8 7001 6626 5 725 5500 101 25 18 chr1 18355288 18356126 -178839306 + Lx3_Mus LINE L1 5745 6588 -421 5 725 3493 66 0 19 chr1 18356400 18356863 -178838569 - L1_Mus1 LINE L1 0 6567 6114 5 725 423 291 211 0 chr1 18357609 18357784 -178837648 - B3 SINE B2 -3 213 2 5 725 3731 116 2 4 chr1 18358048 18358584 -178836848 + Lx2 LINE L1 6428 6962 -35 5 725 492 83 0 56 chr1 18358566 18358655 -178836777 + L1Md_F3 LINE L1 6486 6569 -15 5 725 21 57 0 0 chr1 18358661 18358696 -178836736 + AT_rich Low_complexity Low_complexity 1 35 0 5 725 443 281 95 24 chr1 18358920 18359088 -178836344 + Lx9 LINE L1 6542 6721 -923 5 725 885 256 10 5 chr1 18359143 18359347 -178836085 - URR1B DNA MER1_type -20 205 1 5 725 865 268 101 101 chr1 18359347 18359920 -178835512 + Lx9 LINE L1 6783 7355 -289 5 725 239 341 0 23 chr1 18360268 18360355 -178835077 + MTEa LTR MaLR 1 85 -294 5 725 573 329 62 44 chr1 18360352 18360692 -178834740 + MT2A LTR ERVL 186 531 -2 5 725 347 127 16 0 chr1 18360985 18361048 -178834384 + (GAGAA)n Simple_repeat Simple_repeat 2 65 0 5 725 387 180 61 24 chr1 18361260 18361425 -178834007 + (TA)n Simple_repeat Simple_repeat 1 171 0 5 725 447 66 40 0 chr1 18361425 18361501 -178833931 + (TTATA)n Simple_repeat Simple_repeat 3 81 0 5 725 488 303 59 33 chr1 18362288 18362592 -178832840 + L1M2 LINE L1 5478 5789 -511 5 725 21 0 0 0 chr1 18362920 18362941 -178832491 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 285 29 0 0 chr1 18363258 18363292 -178832140 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 725 192 77 0 0 chr1 18363419 18363445 -178831987 + (TTC)n Simple_repeat Simple_repeat 2 27 0 5 725 7798 61 2 4 chr1 18363504 18365105 -178830327 - L1Md_F2 LINE L1 -3 6579 4980 5 725 806 308 58 89 chr1 18365129 18365489 -178829943 + MTE2a LTR MaLR 1 349 -30 5 725 240 184 0 0 chr1 18366241 18366290 -178829142 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 725 540 318 55 15 chr1 18366596 18366797 -178828635 + Lx8 LINE L1 7124 7332 -141 5 725 21 0 0 0 chr1 18366885 18366906 -178828526 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 249 33 0 0 chr1 18368296 18368326 -178827106 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 725 407 333 49 14 chr1 18368460 18368603 -178826829 + B1_Mur1 SINE Alu 1 148 -1 5 725 297 0 0 0 chr1 18368903 18368936 -178826496 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 725 24 32 0 0 chr1 18370002 18370033 -178825399 + AT_rich Low_complexity Low_complexity 1 31 0 5 725 1174 108 0 9 chr1 18370389 18370619 -178824813 + (TA)n Simple_repeat Simple_repeat 1 227 0 5 725 240 59 0 0 chr1 18371340 18371374 -178824058 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 725 258 56 0 0 chr1 18375160 18375196 -178820236 + (T)n Simple_repeat Simple_repeat 1 36 0 5 725 612 110 0 0 chr1 18375585 18375676 -178819756 - BC1_Mm scRNA scRNA -61 91 1 5 725 225 376 100 60 chr1 18375984 18376134 -178819298 + RSINE1 SINE B4 2 157 -8 5 725 331 312 125 34 chr1 18376431 18376607 -178818825 + MER58C DNA MER1_type 4 195 -20 5 725 302 280 225 39 chr1 18377681 18377863 -178817569 + B3 SINE B2 1 216 0 5 725 22 35 0 0 chr1 18378629 18378658 -178816774 + AT_rich Low_complexity Low_complexity 1 29 0 5 725 271 0 0 49 chr1 18378914 18378955 -178816477 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 725 23 33 0 0 chr1 18380661 18380691 -178814741 + AT_rich Low_complexity Low_complexity 1 30 0 5 725 1196 96 0 6 chr1 18381344 18381522 -178813910 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 5 725 600 186 0 0 chr1 18381524 18381642 -178813790 + GA-rich Low_complexity Low_complexity 4 121 0 5 725 355 252 53 26 chr1 18381652 18381766 -178813666 + ID_B1 SINE B4 108 224 0 5 725 641 282 9 35 chr1 18381850 18381997 -178813435 + Lx8 LINE L1 6252 6398 -1075 5 725 2012 48 0 4 chr1 18381997 18382250 -178813182 - L1Md_T LINE L1 0 6582 6331 5 725 641 282 9 35 chr1 18382250 18382333 -178813099 + Lx8 LINE L1 6399 6476 -997 5 725 23525 69 1 0 chr1 18382335 18386205 -178809227 - L1Md_F2 LINE L1 -2 6580 2708 5 725 1133 337 32 28 chr1 18386390 18386919 -178808513 + Lx8 LINE L1 6565 7095 -378 5 725 391 252 43 0 chr1 18387055 18387170 -178808262 + Lx5 LINE L1 6921 7040 -10 5 725 327 152 12 25 chr1 18387190 18387271 -178808161 + GA-rich Low_complexity Low_complexity 2 81 0 5 725 6970 107 6 0 chr1 18387940 18389487 -178805945 - L1_Mus2 LINE L1 0 6566 5013 5 725 2199 112 40 3 chr1 18389470 18389847 -178805585 - MusHAL1 LINE L1 -617 2095 1705 5 725 723 104 0 42 chr1 18389847 18389967 -178805465 - L1_Mus2 LINE L1 -3229 2654 2540 5 725 365 311 58 57 chr1 18390033 18390783 -178804649 + L1ME2 LINE L1 5141 5892 -272 5 725 1802 217 191 8 chr1 18390801 18391310 -178804122 + RMER20B LTR ERVK 1 602 -25 5 725 885 289 8 50 chr1 18391318 18391560 -178803872 + MTEa LTR MaLR 107 338 -41 5 725 288 0 0 0 chr1 18391560 18391592 -178803840 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 725 829 331 11 46 chr1 18391592 18391631 -178803801 + MTEa LTR MaLR 339 378 -1 5 725 190 340 258 4 chr1 18392825 18393073 -178802359 - L2 LINE L2 -416 3003 2693 5 725 252 0 0 0 chr1 18394099 18394127 -178801305 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 725 984 117 0 0 chr1 18394127 18394339 -178801093 + (GA)n Simple_repeat Simple_repeat 1 212 0 5 725 609 311 108 0 chr1 18394662 18394874 -178800558 - ORR1D2 LTR MaLR -135 235 1 5 725 6855 127 22 55 chr1 18395232 18396920 -178798512 + L1_Mus2 LINE L1 4964 6563 -3 5 725 22 0 0 0 chr1 18396920 18396942 -178798490 + AT_rich Low_complexity Low_complexity 1 22 0 5 725 728 203 198 0 chr1 18397111 18397298 -178798134 - URR1B DNA MER1_type -1 224 1 5 725 1041 316 50 52 chr1 18397319 18397776 -178797656 - MT2A LTR ERVL -77 456 1 5 725 26 0 0 0 chr1 18398327 18398353 -178797079 + AT_rich Low_complexity Low_complexity 1 26 0 5 725 25 31 0 0 chr1 18398445 18398477 -178796955 + AT_rich Low_complexity Low_complexity 1 32 0 5 725 714 299 22 0 chr1 18398506 18398690 -178796742 + B3A SINE B2 6 193 -5 5 725 1962 113 29 20 chr1 18398744 18399050 -178796382 - RLTR27 LTR ERVK 0 309 1 5 725 1476 219 32 46 chr1 18399050 18399423 -178796009 - ORR1D1 LTR MaLR -6 368 1 5 725 307 250 175 49 chr1 18400256 18400399 -178795033 + HAL1-3A_ME LINE L1 2263 2423 -435 5 725 322 206 123 0 chr1 18401168 18401241 -178794191 + Lx8 LINE L1 7269 7350 -123 5 725 345 100 0 0 chr1 18401923 18401973 -178793459 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 5 725 514 209 11 22 chr1 18402470 18402651 -178792781 + RMER17C LTR ERVK 95 273 -137 5 725 230 56 28 0 chr1 18402651 18402687 -178792745 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 725 367 133 41 0 chr1 18402770 18402868 -178792564 + (TCTG)n Simple_repeat Simple_repeat 2 103 0 5 725 2459 70 44 0 chr1 18403058 18403401 -178792031 - L1_Mus1 LINE L1 -489 6078 5721 5 725 3697 61 23 0 chr1 18403401 18403876 -178791556 + L1_Mus1 LINE L1 6081 6566 -1 5 725 1044 66 0 0 chr1 18404539 18404676 -178790756 + (GAA)n Simple_repeat Simple_repeat 2 138 0 5 725 195 139 0 0 chr1 18405798 18405834 -178789598 + (T)n Simple_repeat Simple_repeat 1 36 0 5 725 302 211 267 9 chr1 18407520 18407625 -178787807 - Lx5 LINE L1 0 7050 6919 5 725 731 201 7 0 chr1 18408004 18408148 -178787284 + B1_Mur3 SINE Alu 1 145 -4 5 725 900 258 49 12 chr1 18409035 18409278 -178786154 - Lx6 LINE L1 -26 7434 7183 5 725 278 343 72 28 chr1 18410194 18410374 -178785058 - LTR16B2 LTR ERVL -2 460 273 5 725 1213 171 33 0 chr1 18410472 18410683 -178784749 + URR1A DNA MER1_type 1 218 -8 5 725 1191 100 0 0 chr1 18410683 18410853 -178784579 + L1_Mus1 LINE L1 6398 6567 0 5 725 255 244 22 11 chr1 18410923 18411014 -178784418 + L1MA8 LINE L1 6200 6291 0 6 725 549 80 0 0 chr1 18411033 18411108 -178784324 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 6 725 485 341 92 34 chr1 18411108 18411402 -178784030 - LTR16B2 LTR ERVL -151 311 1 5 725 5611 120 21 7 chr1 18412310 18413173 -178782259 + L1_Mus4 LINE L1 5669 6519 -117 6 725 19884 183 18 100 chr1 18413145 18413940 -178781492 + Lx5 LINE L1 1275 2053 -3824 6 725 468 0 0 0 chr1 18413940 18413992 -178781440 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 725 19884 183 18 100 chr1 18413992 18414758 -178780674 + Lx5 LINE L1 2054 2822 -3055 6 725 1414 198 43 23 chr1 18414758 18415110 -178780322 - RLTR10D LTR ERVK 0 359 1 6 725 19884 183 18 100 chr1 18415110 18415399 -178780033 + Lx5 LINE L1 2823 3092 -2785 6 725 405 223 0 83 chr1 18415399 18415604 -178779828 + RMER17C LTR ERVK 88 275 -135 6 725 19884 183 18 100 chr1 18415604 18417236 -178778196 + Lx5 LINE L1 3093 4622 -1255 6 725 207 0 0 0 chr1 18417236 18417259 -178778173 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 725 19884 187 32 94 chr1 18417259 18419748 -178775684 + Lx5 LINE L1 4623 7050 0 6 725 400 269 10 0 chr1 18420011 18420115 -178775317 - L1M3 LINE L1 -1517 4623 4519 6 725 7227 83 10 8 chr1 18420352 18421237 -178774195 + Lx3_Mus LINE L1 5025 5906 -1103 6 725 450 0 0 0 chr1 18421237 18421287 -178774145 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 725 7227 136 78 25 chr1 18421287 18422295 -178773137 + Lx3_Mus LINE L1 5907 6985 -24 6 725 210 37 0 0 chr1 18422295 18422322 -178773110 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 6 725 248 242 31 52 chr1 18422335 18422431 -178773001 - Lx9 LINE L1 -12 7632 7539 6 725 306 0 0 0 chr1 18422435 18422469 -178772963 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 6 725 1151 49 7 0 chr1 18422555 18422698 -178772734 + B1_Mus1 SINE Alu 2 145 -3 6 725 229 184 6 113 chr1 18422699 18422858 -178772574 + A-rich Low_complexity Low_complexity 1 142 0 6 725 274 302 0 40 chr1 18422858 18422958 -178772474 - L1_Rod LINE L1 -3625 2222 2127 6 725 1228 229 52 7 chr1 18423307 18423593 -178771839 - Lx5 LINE L1 -8 7042 6744 6 725 270 0 0 0 chr1 18424547 18424577 -178770855 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 725 1947 184 26 13 chr1 18424944 18425330 -178770102 + ORR1B1 LTR MaLR 3 393 -1 6 725 1191 41 18 0 chr1 18426424 18426594 -178768838 + (CA)n Simple_repeat Simple_repeat 2 174 0 6 725 531 0 0 0 chr1 18426949 18427008 -178768424 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 725 209 33 33 0 chr1 18427008 18427038 -178768394 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 6 725 925 322 66 51 chr1 18427209 18427507 -178767925 - Lx8 LINE L1 -705 6768 6478 6 725 4194 36 0 0 chr1 18427507 18428000 -178767432 + L1Md_T LINE L1 6090 6582 0 6 725 925 322 66 51 chr1 18428000 18428234 -178767198 - Lx8 LINE L1 -996 6477 6228 6 725 22 35 0 0 chr1 18428381 18428410 -178767022 + AT_rich Low_complexity Low_complexity 1 29 0 6 725 1763 226 82 49 chr1 18428625 18429160 -178766272 + RLTR31_Mur LTR ERVK 1 553 0 6 725 815 182 6 9 chr1 18429174 18429492 -178765940 + CT-rich Low_complexity Low_complexity 1 316 0 6 725 340 366 7 14 chr1 18429520 18429664 -178765768 - Lx6 LINE L1 -41 7419 7277 6 725 321 162 0 0 chr1 18430164 18430232 -178765200 + A-rich Low_complexity Low_complexity 1 68 0 6 725 1684 276 56 2 chr1 18430281 18430709 -178764723 + Lx5 LINE L1 6480 6930 -120 6 725 265 128 0 0 chr1 18430731 18430770 -178764662 - L1_Mur2 LINE L1 -2356 3521 3483 6 725 306 0 0 0 chr1 18430770 18430804 -178764628 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 6 725 270 271 53 88 chr1 18430814 18431001 -178764431 - Lx2B LINE L1 -48 7010 6843 6 725 314 175 63 0 chr1 18431006 18431069 -178764363 - MusHAL1 LINE L1 -436 2276 2210 6 725 270 291 153 14 chr1 18431731 18431905 -178763527 + L1MA9 LINE L1 5823 6025 -275 6 725 261 0 0 0 chr1 18431909 18431938 -178763494 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 725 855 268 50 53 chr1 18431940 18432240 -178763192 - Lx6 LINE L1 -15 7445 7147 6 725 276 237 38 15 chr1 18432275 18432321 -178763111 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 725 204 40 0 0 chr1 18432321 18432346 -178763086 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 725 276 237 38 15 chr1 18432346 18432432 -178763000 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 725 242 282 14 0 chr1 18432483 18432554 -178762878 + GA-rich Low_complexity Low_complexity 1 72 0 6 725 6497 67 3 6 chr1 18433036 18433894 -178761538 - L1Md_F2 LINE L1 -12 6570 5675 6 725 6166 70 5 0 chr1 18434035 18434836 -178760596 + L1_Mm LINE L1 4758 5562 -321 6 725 6844 7 1 0 chr1 18434992 18435803 -178759629 - L1Md_A LINE L1 -658 5924 5113 6 725 6195 1 0 0 chr1 18435803 18436487 -178758945 + L1Md_A LINE L1 5899 6582 0 6 725 584 298 31 16 chr1 18436678 18436872 -178758560 - B3A SINE B2 0 198 2 6 725 21 0 0 0 chr1 18437017 18437038 -178758394 + AT_rich Low_complexity Low_complexity 1 21 0 6 725 243 0 0 0 chr1 18437815 18437842 -178757590 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 725 21068 19 0 0 chr1 18439130 18441590 -178753842 + L1Md_T LINE L1 3127 5586 -297 6 725 8923 9 0 0 chr1 18441590 18442586 -178752846 + L1Md_T LINE L1 5587 6582 0 6 725 303 28 0 0 chr1 18442747 18442783 -178752649 + (A)n Simple_repeat Simple_repeat 1 36 0 6 725 396 198 281 0 chr1 18442793 18442889 -178752543 + URR1B DNA MER1_type 1 123 -102 6 725 269 379 17 6 chr1 18443404 18443579 -178751853 + L1MDa LINE L1 879 1055 -5485 6 725 363 314 58 26 chr1 18443571 18443761 -178751671 - L1M2 LINE L1 -792 5505 5310 6 725 234 91 0 0 chr1 18443765 18443798 -178751634 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 725 628 316 60 17 chr1 18443841 18444360 -178751072 - L1M2 LINE L1 -1424 4719 4179 6 725 27 49 0 0 chr1 18445225 18445266 -178750166 + AT_rich Low_complexity Low_complexity 1 41 0 6 725 878 197 5 42 chr1 18445316 18445357 -178750075 - B2_Mm1t SINE B2 -7 186 151 6 725 388 30 91 0 chr1 18445357 18445423 -178750009 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 6 725 957 116 0 20 chr1 18445423 18445572 -178749860 - B2_Mm2 SINE B2 -47 148 3 6 725 1382 183 0 4 chr1 18445635 18445898 -178749534 - Lx LINE L1 -1 6653 6392 6 725 357 325 156 33 chr1 18446038 18446487 -178748945 + L1MDa LINE L1 1815 2318 -4315 6 725 500 329 128 34 chr1 18446600 18446644 -178748788 + L1MDa LINE L1 2553 2596 -3941 6 725 297 0 0 0 chr1 18446644 18446677 -178748755 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 725 500 329 128 34 chr1 18446677 18447076 -178748356 + L1MDa LINE L1 2597 3038 -3499 6 725 330 26 0 0 chr1 18448161 18448200 -178747232 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 725 243 0 0 0 chr1 18448256 18448283 -178747149 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 725 282 87 0 0 chr1 18449909 18449955 -178745477 + (A)n Simple_repeat Simple_repeat 1 46 0 6 725 490 298 33 0 chr1 18450025 18450176 -178745256 - RSINE1 SINE B4 -8 157 2 6 725 204 300 38 48 chr1 18451054 18451159 -178744273 - MIRb SINE MIR -17 251 148 6 725 296 301 94 63 chr1 18455645 18455868 -178739564 + RMER2 LTR ERV1 334 563 -4 6 725 183 240 40 0 chr1 18456191 18456241 -178739191 - MIRm SINE MIR -148 128 77 6 725 206 333 103 0 chr1 18456550 18456637 -178738795 + MIRb SINE MIR 2 97 -171 6 725 269 272 69 132 chr1 18456976 18457024 -178738408 - MTD LTR MaLR -5 374 325 6 725 955 197 89 0 chr1 18457024 18457227 -178738205 - URR1A DNA MER1_type -3 223 3 6 725 492 235 120 71 chr1 18457227 18457384 -178738048 - MTD LTR MaLR -50 369 197 6 725 536 177 142 24 chr1 18457772 18457899 -178737533 - B1_Mm SINE Alu -1 146 5 6 725 444 293 12 158 chr1 18458026 18458273 -178737159 + ID_B1 SINE B4 1 211 -13 6 725 25 83 0 0 chr1 18458345 18458405 -178737027 + AT_rich Low_complexity Low_complexity 1 60 0 6 725 1123 71 0 0 chr1 18459512 18459653 -178735779 + B1_Mus1 SINE Alu 2 142 -6 6 725 21 57 0 0 chr1 18460000 18460035 -178735397 + AT_rich Low_complexity Low_complexity 1 35 0 6 725 21 36 0 0 chr1 18460244 18460272 -178735160 + AT_rich Low_complexity Low_complexity 1 28 0 6 725 215 337 47 75 chr1 18460443 18460549 -178734883 + PB1D10 SINE Alu 9 111 -6 6 725 23 33 0 0 chr1 18461292 18461322 -178734110 + AT_rich Low_complexity Low_complexity 1 30 0 6 725 405 0 0 0 chr1 18461406 18461451 -178733981 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 725 752 166 65 0 chr1 18461458 18461593 -178733839 - ORR1B1 LTR MaLR -8 386 243 6 725 1075 199 112 17 chr1 18461593 18461791 -178733641 - RMER17C LTR ERVK 0 410 216 6 725 612 27 0 0 chr1 18461791 18461865 -178733567 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 725 1075 199 112 17 chr1 18461865 18461962 -178733470 - RMER17C LTR ERVK -195 215 87 6 725 3917 125 75 5 chr1 18462135 18462784 -178732648 + L1VL2 LINE L1 147 841 -5494 6 725 35368 49 0 3 chr1 18462789 18468300 -178727132 + L1Md_T LINE L1 1 5589 -297 6 725 8469 30 1 0 chr1 18468300 18469295 -178726137 + L1Md_T LINE L1 5590 6585 0 6 725 1323 71 95 0 chr1 18469298 18469340 -178726092 + L1VL2 LINE L1 815 856 -5479 6 725 6858 39 0 0 chr1 18469340 18470158 -178725274 + L1Md_T LINE L1 5764 6581 -1 6 725 10524 88 55 39 chr1 18470158 18470777 -178724655 + L1VL2 LINE L1 857 1493 -2122 6 725 1149 75 0 0 chr1 18470777 18470924 -178724508 + B1_Mus1 SINE Alu 2 148 0 6 725 10524 94 41 54 chr1 18470924 18472187 -178723245 + L1VL2 LINE L1 1494 2726 -889 6 725 6427 59 2 21 chr1 18472393 18473244 -178722188 + L1Md_F2 LINE L1 5735 6569 -13 6 725 27 49 0 0 chr1 18473390 18473431 -178722001 + AT_rich Low_complexity Low_complexity 1 41 0 6 725 540 265 19 39 chr1 18473674 18473856 -178721576 - RMER17C LTR ERVK -289 121 1 6 725 1006 195 30 48 chr1 18473857 18474111 -178721321 - ORR1B1 LTR MaLR -151 243 1 6 725 25 31 0 0 chr1 18474977 18475009 -178720423 + AT_rich Low_complexity Low_complexity 1 32 0 6 725 1304 242 62 17 chr1 18476318 18476675 -178718757 + ORR1D1 LTR MaLR 1 373 -1 6 725 26 30 0 0 chr1 18477102 18477135 -178718297 + AT_rich Low_complexity Low_complexity 1 33 0 6 725 351 300 11 11 chr1 18477192 18477283 -178718149 + B3 SINE B2 52 142 -74 6 725 7503 84 3 1 chr1 18477463 18478996 -178716436 - L1_Mus1 LINE L1 -1 6566 5030 6 725 222 192 0 0 chr1 18479166 18479218 -178716214 + (CATA)n Simple_repeat Simple_repeat 3 54 0 6 725 417 103 0 0 chr1 18479224 18479292 -178716140 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 725 21 57 0 0 chr1 18480556 18480591 -178714841 + AT_rich Low_complexity Low_complexity 1 35 0 6 725 484 89 25 0 chr1 18480829 18480908 -178714524 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 725 242 248 9 73 chr1 18480910 18481019 -178714413 - L1_Mur1 LINE L1 -1426 4460 4359 6 726 191 333 0 40 chr1 18481434 18481484 -178713948 - MIRm SINE MIR -71 205 158 7 726 1131 310 37 15 chr1 18481764 18482173 -178713259 + Lx9 LINE L1 7052 7469 -175 7 726 1509 257 78 110 chr1 18482309 18483285 -178712147 - RMER17B LTR ERVK -4 904 2 7 726 9075 116 6 24 chr1 18483322 18484793 -178710639 + Lx3A LINE L1 5536 6978 -3 7 726 678 366 14 0 chr1 18484917 18485130 -178710302 + B3 SINE B2 1 216 0 7 726 622 219 32 0 chr1 18486699 18486822 -178708610 + B1_Mm SINE Alu 9 135 -12 7 726 717 98 0 0 chr1 18486823 18486935 -178708497 + (GGAA)n Simple_repeat Simple_repeat 2 113 0 7 726 330 283 78 0 chr1 18487041 18487143 -178708289 + MLT1B LTR MaLR 264 437 -30 7 726 998 177 38 27 chr1 18487179 18487365 -178708067 + ORR1B1 LTR MaLR 142 329 -65 7 726 328 265 112 35 chr1 18487467 18487603 -178707829 + MLT1B LTR MaLR 219 366 -8 7 726 286 204 19 0 chr1 18487661 18487715 -178707717 + ORR1A4 LTR MaLR 264 318 -11 7 726 192 77 0 0 chr1 18489152 18489178 -178706254 + (A)n Simple_repeat Simple_repeat 1 26 0 7 726 185 65 32 0 chr1 18489968 18489999 -178705433 + (ATTTG)n Simple_repeat Simple_repeat 4 35 0 7 726 792 301 10 29 chr1 18490005 18490210 -178705222 - ID_B1 SINE B4 -14 210 10 7 726 1744 152 20 109 chr1 18490585 18491035 -178704397 - RMER17C LTR ERVK 0 410 1 7 726 402 175 0 0 chr1 18491446 18491526 -178703906 + (TA)n Simple_repeat Simple_repeat 1 80 0 7 726 507 362 21 13 chr1 18493277 18493515 -178701917 + MTD LTR MaLR 1 240 -179 7 726 700 250 148 5 chr1 18493528 18493745 -178701687 + MTD LTR MaLR 172 419 0 7 726 846 96 13 6 chr1 18494264 18494422 -178701010 + (GA)n Simple_repeat Simple_repeat 2 160 0 7 726 243 0 0 0 chr1 18494485 18494512 -178700920 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 726 943 166 26 13 chr1 18494766 18494987 -178700445 + Lx2B LINE L1 6224 6447 -529 7 726 733 211 0 0 chr1 18494969 18495102 -178700330 + Lx2B LINE L1 6677 6809 -167 7 726 233 292 28 19 chr1 18495286 18495394 -178700038 + Lx2B LINE L1 6892 7000 0 7 726 1174 260 71 112 chr1 18495610 18496103 -178699329 - RLTR18B LTR ERVK 0 512 40 7 726 4389 128 15 65 chr1 18496206 18497057 -178698375 - RMER17D2 LTR ERVK 0 809 1 7 726 3093 68 0 5 chr1 18497797 18498195 -178697237 - MTA_Mm LTR MaLR 0 396 1 7 726 238 292 14 0 chr1 18498399 18498471 -178696961 - B3 SINE B2 0 216 144 7 726 1486 239 24 82 chr1 18499586 18500000 -178695432 - MTD LTR MaLR -5 414 25 7 726 520 318 31 22 chr1 18500406 18500628 -178694804 + MER31A LTR ERV1 260 483 -2 1 726 790 72 0 18 chr1 18500633 18500746 -178694686 - L1_Mus1 LINE L1 -494 6073 5963 2 726 1951 68 0 0 chr1 18500746 18500995 -178694437 + L1_Mus1 LINE L1 6319 6567 0 3 726 319 219 6 22 chr1 18503661 18503853 -178691579 + CT-rich Low_complexity Low_complexity 1 188 0 4 726 218 32 32 0 chr1 18504584 18504615 -178690817 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 726 377 289 99 31 chr1 18504636 18504797 -178690635 + MER82 DNA MER2_type 57 228 -425 6 726 339 339 86 96 chr1 18505037 18505246 -178690186 + B3A SINE B2 6 212 -4 7 726 836 322 113 22 chr1 18505320 18505660 -178689772 + MTD LTR MaLR 9 404 -15 8 726 2876 21 0 43 chr1 18506920 18507272 -178688160 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 726 19570 34 47 28 chr1 18507272 18509884 -178685548 + IAPEz-int LTR ERVK 8 2670 -3811 9 726 8990 23 3 0 chr1 18509865 18510941 -178684491 + IAPEz-int LTR ERVK 5403 6481 0 9 726 2876 21 0 43 chr1 18510941 18511293 -178684139 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 726 294 234 19 9 chr1 18511456 18511564 -178683868 + Lx9 LINE L1 7530 7638 -6 1 726 435 336 58 13 chr1 18511600 18511614 -178683818 - RSINE1 SINE B4 0 165 152 1 726 414 0 0 0 chr1 18511614 18511660 -178683772 + (TATTG)n Simple_repeat Simple_repeat 2 47 0 1 726 435 336 58 13 chr1 18511660 18511799 -178683633 - RSINE1 SINE B4 -14 151 5 1 726 249 346 36 55 chr1 18512414 18512524 -178682908 - MTEb LTR MaLR -18 361 254 1 726 327 78 0 0 chr1 18512694 18512745 -178682687 + (T)n Simple_repeat Simple_repeat 1 51 0 1 726 1529 198 41 0 chr1 18512750 18513089 -178682343 - Lx9 LINE L1 -517 7127 6775 1 726 562 250 159 28 chr1 18513084 18513298 -178682134 + Lx9 LINE L1 6493 6734 -910 1 726 228 404 18 0 chr1 18513481 18513590 -178681842 - ID_B1 SINE B4 -5 219 109 1 726 33 0 0 0 chr1 18514003 18514036 -178681396 + AT_rich Low_complexity Low_complexity 1 33 0 1 726 47 19 0 0 chr1 18514235 18514289 -178681143 + AT_rich Low_complexity Low_complexity 1 54 0 1 726 476 332 178 37 chr1 18514661 18515205 -178680227 - L3 LINE CR1 -351 4138 3518 1 726 673 243 0 20 chr1 18515592 18515739 -178679693 + B1_Mus2 SINE Alu 1 144 -3 2 726 237 356 67 0 chr1 18515753 18515843 -178679589 + MIR SINE MIR 12 107 -155 2 726 23 54 0 0 chr1 18515980 18516017 -178679415 + AT_rich Low_complexity Low_complexity 1 37 0 2 726 587 267 80 5 chr1 18516790 18516978 -178678454 + B3 SINE B2 1 202 -14 2 726 4497 63 2 10 chr1 18517002 18517591 -178677841 - L1Md_F2 LINE L1 -11 6571 5988 2 726 2751 128 48 40 chr1 18517690 18518209 -178677223 + L1_Mus3 LINE L1 6096 6618 -20 2 726 194 0 0 37 chr1 18518844 18518871 -178676561 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 726 226 221 76 25 chr1 18519561 18519640 -178675792 + L1M3 LINE L1 4984 5066 -1074 2 726 618 153 0 0 chr1 18519996 18520107 -178675325 + GA-rich Low_complexity Low_complexity 3 113 0 2 726 297 269 0 28 chr1 18520107 18520214 -178675218 + L1M3 LINE L1 5491 5594 -580 2 726 1699 274 92 143 chr1 18520248 18521027 -178674405 - Lx5 LINE L1 -19 7031 6290 2 726 183 42 0 0 chr1 18521027 18521051 -178674381 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 726 995 75 7 7 chr1 18521059 18521194 -178674238 - B1_Mm SINE Alu -12 135 1 3 726 1699 279 84 132 chr1 18521194 18521360 -178674072 - Lx5 LINE L1 -763 6287 6100 2 726 1174 268 98 84 chr1 18521380 18522077 -178673355 - RMER17B LTR ERVK -178 730 51 3 726 640 149 34 42 chr1 18522077 18522196 -178673236 - RLTR22_Mur LTR ERVK 0 1848 1731 3 726 414 0 0 0 chr1 18522196 18522242 -178673190 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 726 2144 75 10 0 chr1 18522243 18522538 -178672894 - L1_Mus1 LINE L1 -323 6244 5947 3 726 2867 62 8 3 chr1 18522539 18522909 -178672523 + L1_Mus1 LINE L1 6196 6567 0 3 726 804 174 0 0 chr1 18522914 18523046 -178672386 - RLTR22_Mus LTR ERVK -134 1674 1543 3 726 5568 100 17 7 chr1 18523299 18524116 -178671316 - RLTR22_Mus LTR ERVK -983 825 1 3 726 1582 105 0 4 chr1 18524239 18524478 -178670954 + L1_Mur1 LINE L1 5536 5773 -113 3 726 387 0 0 0 chr1 18524678 18524721 -178670711 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 726 786 48 0 0 chr1 18524721 18524823 -178670609 + (GA)n Simple_repeat Simple_repeat 1 103 0 3 726 290 26 0 25 chr1 18524979 18525019 -178670413 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 726 33786 35 2 0 chr1 18527108 18533616 -178661816 + L1Md_T LINE L1 1 5589 -297 4 726 8932 7 0 3 chr1 18533616 18534613 -178660819 + L1Md_T LINE L1 5590 6583 -2 4 726 290 307 27 74 chr1 18534838 18534986 -178660446 + ID_B1 SINE B4 80 220 -4 4 726 3955 58 2 8 chr1 18535039 18535539 -178659893 - L1Md_F2 LINE L1 -13 6569 6073 4 726 13976 166 122 8 chr1 18535836 18541537 -178653895 - L1_Mus3 LINE L1 0 6638 217 4 726 1978 98 37 3 chr1 18541991 18542288 -178653144 - L1_Mus4 LINE L1 -4 6632 6326 4 726 237 277 126 37 chr1 18542480 18542615 -178652817 + LTR33C LTR ERVL 282 428 -201 4 726 458 351 87 20 chr1 18543630 18543883 -178651549 - MLT1F1 LTR MaLR 0 569 300 4 726 593 299 7 7 chr1 18543876 18544014 -178651418 - MTE2a-int LTR MaLR -474 1106 969 4 726 555 90 0 0 chr1 18544060 18544138 -178651294 + (T)n Simple_repeat Simple_repeat 1 78 0 4 726 989 244 44 63 chr1 18544143 18544510 -178650922 + L1_Mur3 LINE L1 5483 5842 -38 5 726 798 311 33 8 chr1 18544513 18544753 -178650679 - MTE2a-int LTR MaLR -1321 259 14 4 726 674 177 21 0 chr1 18544773 18544914 -178650518 + T-rich Low_complexity Low_complexity 1 144 0 5 726 790 317 72 39 chr1 18544914 18545219 -178650213 - MTE2a LTR MaLR -2 377 63 4 726 651 60 0 0 chr1 18545428 18545512 -178649920 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 726 375 154 0 30 chr1 18546089 18546154 -178649278 - MTC LTR MaLR 0 421 359 5 726 1041 93 0 0 chr1 18546154 18546293 -178649139 + B1_Mus1 SINE Alu 1 139 -9 5 726 273 57 0 0 chr1 18546293 18546328 -178649104 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 726 1578 184 11 0 chr1 18546329 18546600 -178648832 - MTC LTR MaLR -41 380 107 5 726 530 156 14 216 chr1 18546602 18546815 -178648617 - L1_Mur3 LINE L1 -625 5255 5086 5 726 1563 287 81 19 chr1 18546818 18547350 -178648082 + Lx6 LINE L1 6841 7405 -55 5 726 843 176 0 0 chr1 18547360 18547519 -178647913 + GA-rich Low_complexity Low_complexity 3 161 0 5 726 534 191 33 57 chr1 18547519 18547641 -178647791 - MTC LTR MaLR -302 119 1 5 726 1293 297 51 17 chr1 18547841 18548310 -178647122 + RMER5 LTR ERV1 40 524 -10 5 726 270 119 85 0 chr1 18548424 18548483 -178646949 - L1_Mus4 LINE L1 -452 6184 6121 6 726 2346 123 41 12 chr1 18548466 18548884 -178646548 + L1_Mus4 LINE L1 6186 6615 -21 6 726 52 58 0 0 chr1 18548889 18548976 -178646456 + AT_rich Low_complexity Low_complexity 1 87 0 6 726 216 127 0 68 chr1 18548998 18549057 -178646375 + A-rich Low_complexity Low_complexity 2 56 0 6 726 6130 39 1 14 chr1 18549186 18549945 -178645487 - L1Md_F2 LINE L1 -2 6580 5832 6 726 30 0 0 0 chr1 18550713 18550743 -178644689 + AT_rich Low_complexity Low_complexity 1 30 0 6 726 329 239 88 122 chr1 18550745 18550893 -178644539 - B1_Mur3 SINE Alu -6 143 1 6 726 307 264 14 14 chr1 18550932 18551005 -178644427 - RSINE1 SINE B4 -18 147 75 6 726 394 321 13 85 chr1 18551102 18551255 -178644177 - B4A SINE B4 -150 142 1 6 726 261 119 0 0 chr1 18551297 18551339 -178644093 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6 726 373 340 53 36 chr1 18552687 18552968 -178642464 + B4A SINE B4 2 287 -5 6 726 481 240 7 44 chr1 18553151 18553286 -178642146 + Lx8 LINE L1 7027 7156 -317 7 726 798 320 43 96 chr1 18553603 18553784 -178641648 - MTE2a LTR MaLR -3 376 194 7 726 2060 191 21 42 chr1 18553784 18554259 -178641173 - RMER4A LTR ERVK 0 466 2 7 726 798 320 43 96 chr1 18554259 18554474 -178640958 - MTE2a LTR MaLR -186 193 1 7 726 463 165 47 0 chr1 18554509 18554594 -178640838 - Lx9 LINE L1 -422 7222 7134 7 726 683 76 17 8 chr1 18555154 18555274 -178640158 - L1_Mus3 LINE L1 -7 6631 6511 7 726 21 36 0 0 chr1 18555653 18555681 -178639751 + AT_rich Low_complexity Low_complexity 1 28 0 7 726 25 65 0 0 chr1 18556086 18556132 -178639300 + AT_rich Low_complexity Low_complexity 1 46 0 7 726 315 323 68 0 chr1 18556878 18557011 -178638421 - L1M5 LINE L1 -636 5488 5347 7 726 314 342 165 0 chr1 18557197 18557355 -178638077 + MamSINE1 SINE tRNA 28 211 -79 7 726 289 438 14 14 chr1 18557357 18557505 -178637927 - Charlie15a DNA MER1_type -74 150 3 7 726 210 233 0 0 chr1 18558134 18558177 -178637255 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 726 296 357 0 9 chr1 18558431 18558544 -178636888 + PB1D10 SINE Alu 4 115 -2 8 726 336 320 106 22 chr1 18559290 18559469 -178635963 + L1MEc LINE L1 723 916 -5484 8 726 268 211 51 210 chr1 18560158 18560296 -178635136 - PB1D10 SINE Alu -1 116 1 8 726 618 346 0 27 chr1 18561643 18561830 -178633602 + B3A SINE B2 6 187 -11 8 726 284 239 108 11 chr1 18562015 18562108 -178633324 - B4A SINE B4 -6 286 185 8 726 810 94 0 0 chr1 18563154 18563271 -178632161 + (TG)n Simple_repeat Simple_repeat 2 118 0 8 726 519 222 0 32 chr1 18563572 18563758 -178631674 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 726 441 355 25 13 chr1 18564838 18564995 -178630437 - RSINE1 SINE B4 -4 161 3 8 726 848 229 171 0 chr1 18566438 18566735 -178628697 - Lx6 LINE L1 -655 6395 6021 8 726 5175 138 32 6 chr1 18566733 18567557 -178627875 - L1VL1 LINE L1 -5563 859 15 9 726 405 199 201 19 chr1 18567559 18567635 -178627797 - Lx6 LINE L1 -802 5075 4985 8 726 369 0 0 0 chr1 18567635 18567676 -178627756 + (TTA)n Simple_repeat Simple_repeat 2 42 0 9 726 405 199 201 19 chr1 18567676 18567753 -178627679 - Lx6 LINE L1 -893 4984 4894 8 726 1431 289 67 14 chr1 18567773 18568418 -178627014 + Lx5 LINE L1 6455 7028 -22 9 726 23 33 0 0 chr1 18568427 18568457 -178626975 + AT_rich Low_complexity Low_complexity 1 30 0 9 726 22 56 0 0 chr1 18568620 18568656 -178626776 + AT_rich Low_complexity Low_complexity 1 36 0 9 726 707 278 81 75 chr1 18568802 18569097 -178626335 - MTE2a LTR MaLR 0 379 83 9 726 3247 62 2 5 chr1 18569714 18570132 -178625300 - L1_Mus1 LINE L1 -1 6566 6150 9 726 3945 41 0 6 chr1 18570422 18570912 -178624520 - L1Md_T LINE L1 -509 6073 5587 9 726 544 81 22 44 chr1 18570930 18571020 -178624412 + B1_Mus2 SINE Alu 60 147 0 9 726 1061 315 114 28 chr1 18571021 18571589 -178623843 + Lx7 LINE L1 5971 6587 -1109 9 726 28 0 0 0 chr1 18571639 18571667 -178623765 + AT_rich Low_complexity Low_complexity 1 28 0 1 726 24 0 0 0 chr1 18571734 18571758 -178623674 + AT_rich Low_complexity Low_complexity 1 24 0 1 726 29 0 0 0 chr1 18574505 18574534 -178620898 + AT_rich Low_complexity Low_complexity 1 29 0 1 726 881 303 68 13 chr1 18574785 18575019 -178620413 - B4 SINE B4 -8 284 38 1 726 202 388 67 10 chr1 18575512 18575616 -178619816 - MIRm SINE MIR -121 155 46 1 726 198 0 0 0 chr1 18575906 18575928 -178619504 + (T)n Simple_repeat Simple_repeat 1 22 0 1 726 1726 118 0 28 chr1 18576282 18576569 -178618863 - L1Md_F2 LINE L1 -1 6581 6303 1 726 3916 54 4 0 chr1 18576569 18577052 -178618380 + L1Md_F2 LINE L1 5831 6315 -267 1 726 4314 80 0 9 chr1 18577078 18577659 -178617773 - L1Md_F2 LINE L1 -12 6570 5995 1 726 1875 89 0 18 chr1 18577799 18578073 -178617359 + L1Md_F2 LINE L1 6300 6568 -14 1 726 23 0 0 0 chr1 18578073 18578096 -178617336 + AT_rich Low_complexity Low_complexity 1 23 0 1 726 3168 184 113 35 chr1 18579674 18580084 -178615348 - RMER17A2 LTR ERVK 0 906 446 1 726 419 0 20 0 chr1 18580084 18580135 -178615297 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 726 3168 184 113 35 chr1 18580135 18580564 -178614868 - RMER17A2 LTR ERVK -461 445 2 1 726 932 271 77 31 chr1 18580711 18580970 -178614462 - MTEa LTR MaLR -108 271 1 1 726 414 185 0 0 chr1 18581527 18581608 -178613824 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 726 612 331 7 0 chr1 18581646 18581797 -178613635 - ID_B1 SINE B4 -72 152 1 1 726 333 314 209 16 chr1 18582021 18582212 -178613220 + MIR SINE MIR 24 251 -11 1 726 2280 82 0 3 chr1 18582782 18583089 -178612343 - L1_Mus2 LINE L1 0 6566 6261 1 726 480 77 0 0 chr1 18583131 18583196 -178612236 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 726 584 333 86 16 chr1 18585045 18585289 -178610143 + B4A SINE B4 8 268 -24 1 726 722 245 40 8 chr1 18585729 18585970 -178609462 + Lx9 LINE L1 5635 5915 -1729 1 726 265 24 48 0 chr1 18585970 18586012 -178609420 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 726 6498 71 4 0 chr1 18586018 18586851 -178608581 - L1_Mus1 LINE L1 0 6567 5732 1 726 413 189 123 12 chr1 18586858 18586980 -178608452 - L1Md_F LINE L1 -5867 752 678 1 726 414 69 0 0 chr1 18587209 18587267 -178608165 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 726 230 351 27 0 chr1 18587353 18587427 -178608005 + ID4_ SINE ID 2 77 -6 1 726 423 107 0 0 chr1 18587481 18587556 -178607876 + (CATA)n Simple_repeat Simple_repeat 2 76 0 1 726 504 338 13 0 chr1 18587569 18587720 -178607712 + Lx9 LINE L1 6357 6509 -1135 1 726 231 36 0 0 chr1 18587819 18587847 -178607585 + (A)n Simple_repeat Simple_repeat 1 28 0 1 726 611 251 62 161 chr1 18587886 18588094 -178607338 - RMER10A LTR ERVL -25 417 234 1 726 473 0 18 0 chr1 18588094 18588151 -178607281 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 726 611 251 62 161 chr1 18588151 18588394 -178607038 - RMER10A LTR ERVL -209 233 12 1 726 214 342 27 14 chr1 18588494 18588568 -178606864 - ID4_ SINE ID -3 80 6 1 726 210 71 0 0 chr1 18588829 18588857 -178606575 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 726 206 323 231 30 chr1 18589104 18589238 -178606194 - L2b LINE L2 -11 3364 3204 1 726 381 22 0 0 chr1 18591314 18591360 -178604072 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 726 276 91 0 0 chr1 18591360 18591404 -178604028 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 726 731 124 0 53 chr1 18591635 18591822 -178603610 + CT-rich Low_complexity Low_complexity 2 178 0 1 726 225 0 0 0 chr1 18591822 18591847 -178603585 + (TTC)n Simple_repeat Simple_repeat 3 27 0 1 726 396 0 0 0 chr1 18591847 18591891 -178603541 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 726 272 220 0 0 chr1 18591901 18591951 -178603481 - Charlie24 DNA MER1_type -30 2420 2371 1 726 1025 78 7 0 chr1 18593535 18593676 -178601756 + B1_Mus2 SINE Alu 6 147 0 1 726 238 333 80 18 chr1 18593815 18593928 -178601504 + PB1D7 SINE Alu 1 120 0 1 726 186 339 101 34 chr1 18594067 18594186 -178601246 + MIRb SINE MIR 127 253 -15 1 726 1319 255 83 14 chr1 18594315 18594677 -178600755 - MTD LTR MaLR -14 405 19 1 726 24 85 0 0 chr1 18595076 18595135 -178600297 + AT_rich Low_complexity Low_complexity 1 59 0 1 726 2463 221 17 54 chr1 18595743 18596340 -178599092 + RMER15 LTR ERVL 1 575 0 1 726 227 352 68 80 chr1 18596699 18596875 -178598557 - B4A SINE B4 -118 174 1 1 726 315 266 12 48 chr1 18596989 18597059 -178598373 + B3A SINE B2 1 70 -125 1 726 348 24 0 0 chr1 18597059 18597100 -178598332 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 726 305 266 12 48 chr1 18597100 18597112 -178598320 + B2_Mm2 SINE B2 71 80 -115 1 726 23 68 0 0 chr1 18597122 18597166 -178598266 + AT_rich Low_complexity Low_complexity 1 44 0 1 726 26 0 0 0 chr1 18597602 18597628 -178597804 + AT_rich Low_complexity Low_complexity 1 26 0 1 726 951 329 78 2 chr1 18597820 18598253 -178597179 + Lx7 LINE L1 6886 7351 -345 1 726 206 202 27 100 chr1 18598258 18598368 -178597064 + T-rich Low_complexity Low_complexity 2 103 0 1 726 1846 239 22 7 chr1 18598701 18599118 -178596314 + Lx5 LINE L1 6628 7050 0 1 726 23 0 0 0 chr1 18599309 18599332 -178596100 + AT_rich Low_complexity Low_complexity 1 23 0 1 726 26 0 0 0 chr1 18599876 18599902 -178595530 + AT_rich Low_complexity Low_complexity 1 26 0 1 726 192 302 32 0 chr1 18600569 18600632 -178594800 - L2 LINE L2 -574 2845 2781 1 726 23 0 0 0 chr1 18600787 18600810 -178594622 + AT_rich Low_complexity Low_complexity 1 23 0 1 726 680 35 0 0 chr1 18601345 18601430 -178594002 - L1Md_F2 LINE L1 -288 6294 6210 1 726 2339 51 0 0 chr1 18601431 18601723 -178593709 + L1_Mus1 LINE L1 6276 6567 0 1 726 377 415 28 42 chr1 18601990 18602204 -178593228 + B4A SINE B4 59 269 -23 1 726 275 85 0 21 chr1 18602204 18602252 -178593180 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 726 744 322 65 60 chr1 18602295 18602678 -178592754 + MTD LTR MaLR 20 404 -15 1 726 351 0 0 0 chr1 18602692 18602731 -178592701 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 726 369 0 0 0 chr1 18602732 18602773 -178592659 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 726 273 209 0 0 chr1 18604088 18604155 -178591277 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 726 340 351 44 26 chr1 18605271 18605543 -178589889 + B4A SINE B4 2 278 -14 1 726 1496 38 0 5 chr1 18605625 18605839 -178589593 + (GA)n Simple_repeat Simple_repeat 1 212 0 1 726 27 0 0 0 chr1 18606143 18606170 -178589262 + AT_rich Low_complexity Low_complexity 1 27 0 1 726 1363 39 6 11 chr1 18608442 18608625 -178586807 + L1Md_F2 LINE L1 6400 6581 -1 1 726 501 17 0 0 chr1 18609272 18609330 -178586102 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 726 545 254 184 36 chr1 18609770 18609966 -178585466 + URR1B DNA MER1_type 1 225 0 1 726 192 305 64 45 chr1 18610507 18610617 -178584815 - L2 LINE L2 -412 3007 2896 1 726 825 289 46 0 chr1 18611114 18611308 -178584124 + B3 SINE B2 9 211 -5 1 726 595 325 7 0 chr1 18611355 18611509 -178583923 + RSINE1 SINE B4 9 163 -2 1 726 603 230 0 106 chr1 18611541 18611692 -178583740 + B1_Mur4 SINE Alu 3 137 -13 1 90 3858 81 0 0 chr1 18611692 18612354 -178583078 - L1VL4 LINE L1 -4144 1739 1078 1 727 405 0 0 0 chr1 18612699 18612744 -178582688 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 727 322 268 26 9 chr1 18614412 18614525 -178580907 + (TATATG)n Simple_repeat Simple_repeat 6 120 0 1 727 218 233 0 0 chr1 18614584 18614627 -178580805 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 727 6527 121 14 8 chr1 18614627 18615604 -178579828 - RLTR13C1 LTR ERVK 0 983 1 1 727 559 104 9 9 chr1 18615605 18615712 -178579720 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1 727 220 234 0 15 chr1 18615714 18615779 -178579653 + GA-rich Low_complexity Low_complexity 1 64 0 1 727 821 298 0 0 chr1 18615779 18615970 -178579462 - B3 SINE B2 -13 203 13 1 727 378 107 0 0 chr1 18615988 18616044 -178579388 + (TTA)n Simple_repeat Simple_repeat 1 56 0 1 727 369 312 115 7 chr1 18616061 18616200 -178579232 - B4 SINE B4 -114 178 25 1 727 5603 56 0 3 chr1 18616616 18617318 -178578114 + L1Md_F2 LINE L1 5877 6576 -6 1 727 573 15 0 0 chr1 18618443 18618509 -178576923 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 727 2939 40 10 28 chr1 18618623 18619011 -178576421 + L1Md_F3 LINE L1 6202 6582 -2 1 727 24 0 0 0 chr1 18619011 18619035 -178576397 + AT_rich Low_complexity Low_complexity 1 24 0 1 727 27 0 0 0 chr1 18619042 18619069 -178576363 + AT_rich Low_complexity Low_complexity 1 27 0 1 727 7850 65 7 3 chr1 18620494 18622088 -178573344 - L1Md_F2 LINE L1 -2 6580 4980 1 727 3716 75 0 0 chr1 18622088 18622565 -178572867 + L1_Mus2 LINE L1 6090 6566 0 1 727 291 114 0 0 chr1 18623075 18623119 -178572313 + (TTC)n Simple_repeat Simple_repeat 2 45 0 1 727 1172 75 0 0 chr1 18623119 18623266 -178572166 - B1_Mm SINE Alu 0 147 1 1 727 21 36 0 0 chr1 18623692 18623720 -178571712 + AT_rich Low_complexity Low_complexity 1 28 0 1 727 3034 250 97 82 chr1 18624697 18625250 -178570182 + Lx7 LINE L1 6476 6996 -700 1 727 1874 173 51 14 chr1 18625250 18625620 -178569812 - ORR1C2 LTR MaLR 0 384 1 1 727 3034 250 97 82 chr1 18625620 18626040 -178569392 + Lx7 LINE L1 6997 7458 -238 1 727 270 0 0 0 chr1 18626040 18626070 -178569362 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 727 3034 250 97 82 chr1 18626070 18626289 -178569143 + Lx7 LINE L1 7459 7687 -9 1 727 2965 108 4 72 chr1 18626304 18626814 -178568618 - Lx2 LINE L1 0 6997 6523 1 727 203 0 0 36 chr1 18626829 18626857 -178568575 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 727 801 175 15 0 chr1 18626857 18626994 -178568438 - B1_Mur4 SINE Alu -10 140 2 1 727 322 278 0 0 chr1 18627011 18627083 -178568349 - tRNA-Ile-ATT tRNA tRNA -3 74 3 1 727 198 0 0 0 chr1 18627426 18627448 -178567984 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 727 917 109 7 0 chr1 18627455 18627592 -178567840 - B1_Mm SINE Alu -1 146 9 2 727 3232 110 8 30 chr1 18627601 18628105 -178567327 - L1_Mus4 LINE L1 -16 6620 6128 2 727 24 53 0 0 chr1 18628719 18628757 -178566675 + AT_rich Low_complexity Low_complexity 1 38 0 2 727 29 60 0 0 chr1 18628798 18628848 -178566584 + AT_rich Low_complexity Low_complexity 1 50 0 2 727 334 322 0 11 chr1 18631104 18631195 -178564237 + B1F1 SINE Alu 13 102 -47 2 727 441 0 0 0 chr1 18631435 18631484 -178563948 + (A)n Simple_repeat Simple_repeat 1 49 0 2 727 468 0 0 0 chr1 18631890 18631942 -178563490 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 727 292 313 147 15 chr1 18632194 18632330 -178563102 - L1_Mm LINE L1 -319 5564 5411 2 727 290 202 48 48 chr1 18632335 18632439 -178562993 - L1_Rod LINE L1 -4101 1746 1643 2 727 241 265 0 0 chr1 18632465 18632533 -178562899 - L1_Rod LINE L1 -4272 1575 1508 2 727 22 35 0 0 chr1 18632687 18632716 -178562716 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 7285 77 8 7 chr1 18632866 18633155 -178562277 - L1_Mus1 LINE L1 0 6567 6282 2 727 2875 45 56 0 chr1 18633155 18633530 -178561902 - MTA_Mm LTR MaLR 0 396 1 2 727 8066 68 22 2 chr1 18633530 18634606 -178560826 - MTA_Mm-int LTR MaLR 0 1098 1 2 727 2959 55 42 3 chr1 18634606 18634987 -178560445 - MTA_Mm LTR MaLR 0 396 1 2 727 25463 114 6 3 chr1 18634987 18639328 -178556104 - L1_Mus1 LINE L1 -286 6281 1928 2 727 2350 221 82 21 chr1 18639327 18640201 -178555231 - L1_Mus1 LINE L1 -5487 1151 249 2 727 242 352 24 42 chr1 18640716 18640882 -178554550 + RSINE1 SINE B4 3 165 0 2 727 45 34 0 0 chr1 18640898 18640957 -178554475 + AT_rich Low_complexity Low_complexity 1 59 0 2 727 702 352 66 54 chr1 18640984 18641375 -178554057 + MTD LTR MaLR 1 381 -26 2 727 459 346 50 19 chr1 18641383 18641542 -178553890 - RSINE1 SINE B4 0 165 2 2 727 420 306 73 71 chr1 18641787 18642277 -178553155 + L1MB7 LINE L1 5438 5928 -256 2 727 22 56 0 0 chr1 18642290 18642326 -178553106 + AT_rich Low_complexity Low_complexity 1 36 0 2 727 23 0 0 0 chr1 18642350 18642373 -178553059 + AT_rich Low_complexity Low_complexity 1 23 0 2 727 2487 269 28 62 chr1 18642379 18642962 -178552470 - Lx6 LINE L1 -11 7449 6892 2 727 450 0 0 0 chr1 18642962 18643012 -178552420 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 727 2487 269 28 62 chr1 18643012 18643137 -178552295 - Lx6 LINE L1 -569 6891 6765 2 727 17778 95 8 16 chr1 18643155 18646720 -178548712 - L1Md_F2 LINE L1 -52 7006 3546 2 727 1679 92 0 91 chr1 18646718 18647005 -178548427 + L1Md_F2 LINE L1 3266 3526 -2357 2 727 1743 261 62 51 chr1 18646999 18647592 -178547840 - Lx5 LINE L1 -600 6450 5851 2 727 314 262 24 12 chr1 18647800 18647885 -178547547 + PB1D10 SINE Alu 31 116 -1 2 727 213 119 0 0 chr1 18648289 18648331 -178547101 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 727 35247 51 1 3 chr1 18648701 18654352 -178541080 + L1Md_T LINE L1 1 5589 -297 2 727 8240 43 0 0 chr1 18654352 18655345 -178540087 + L1Md_T LINE L1 5590 6582 -3 2 727 360 77 0 0 chr1 18655816 18655868 -178539564 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 727 21 0 0 0 chr1 18655940 18655961 -178539471 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 24 0 0 0 chr1 18656011 18656035 -178539397 + AT_rich Low_complexity Low_complexity 1 24 0 2 727 1661 79 13 0 chr1 18656272 18656501 -178538931 + L1Md_F2 LINE L1 6351 6582 0 2 727 21 0 0 0 chr1 18656515 18656536 -178538896 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 21 0 0 0 chr1 18658997 18659018 -178536414 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 455 158 0 0 chr1 18659560 18659642 -178535790 + L1_Mur1 LINE L1 4978 5059 -827 2 727 704 261 44 11 chr1 18659657 18659839 -178535593 - B3 SINE B2 -28 188 1 2 727 21 0 0 0 chr1 18660041 18660062 -178535370 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 557 348 57 25 chr1 18660111 18660429 -178535003 - MLT1A LTR MaLR -46 328 1 2 727 389 284 154 33 chr1 18661281 18661463 -178533969 + Lx8 LINE L1 7072 7275 -198 2 727 293 268 186 38 chr1 18661565 18661856 -178533576 - Lx9 LINE L1 -7 7637 7304 2 727 242 304 67 67 chr1 18662119 18662253 -178533179 - LTR85c LTR Gypsy? -268 555 422 2 727 282 43 71 14 chr1 18662727 18662797 -178532635 + (CAAAA)n Simple_repeat Simple_repeat 3 76 0 2 727 183 139 0 0 chr1 18663363 18663399 -178532033 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 727 1188 61 0 0 chr1 18663409 18663556 -178531876 - B1_Mm SINE Alu 0 147 1 2 727 353 372 82 41 chr1 18663728 18664045 -178531387 - MTD LTR MaLR -89 330 1 2 727 21 0 0 0 chr1 18664127 18664148 -178531284 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 305 355 76 29 chr1 18664164 18664335 -178531097 + B3A SINE B2 18 196 -2 2 727 7156 184 20 16 chr1 18664731 18665369 -178530063 + Lx LINE L1 4461 5113 -770 2 727 897 137 50 0 chr1 18665369 18665508 -178529924 + B1_Mus2 SINE Alu 2 147 0 2 727 7156 184 20 16 chr1 18665508 18665709 -178529723 + Lx LINE L1 5114 5305 -578 2 727 2952 48 47 8 chr1 18665709 18666090 -178529342 + MTA_Mm LTR MaLR 1 396 0 2 727 7156 135 30 10 chr1 18666090 18667402 -178528030 + Lx LINE L1 5306 6636 -18 2 727 570 338 12 0 chr1 18668299 18668459 -178526973 + RSINE1 SINE B4 4 165 0 2 727 333 0 0 0 chr1 18668473 18668510 -178526922 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 727 6043 207 95 7 chr1 18668600 18670007 -178525425 + Lx5 LINE L1 5521 7047 -3 2 727 573 187 20 39 chr1 18670008 18670234 -178525198 + GA-rich Low_complexity Low_complexity 1 221 0 2 727 1104 96 17 0 chr1 18670234 18670411 -178525021 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 727 573 209 6 26 chr1 18670411 18670492 -178524940 + polypurine Low_complexity Low_complexity 1 79 0 2 727 348 24 0 0 chr1 18670492 18670533 -178524899 + (GGGGA)n Simple_repeat Simple_repeat 5 45 0 2 727 747 197 11 6 chr1 18670533 18670712 -178524720 + GA-rich Low_complexity Low_complexity 1 180 0 2 727 441 214 0 0 chr1 18670699 18670797 -178524635 + A-rich Low_complexity Low_complexity 5 102 0 2 727 1413 295 127 22 chr1 18671129 18671856 -178523576 + Lx7 LINE L1 229 1031 -6697 2 727 7848 79 14 6 chr1 18671842 18673763 -178521669 + L1Md_F2 LINE L1 167 2102 -3781 2 727 11589 75 8 2 chr1 18673761 18675317 -178520115 + L1Md_F2 LINE L1 4022 5586 -297 2 727 7355 54 52 0 chr1 18675317 18676250 -178519182 + L1Md_F2 LINE L1 5587 6568 -14 2 727 13738 205 57 34 chr1 18676262 18680106 -178515326 + Lx7 LINE L1 1010 4933 -947 2 727 2001 170 74 3 chr1 18680110 18680476 -178514956 + ORR1B1 LTR MaLR 3 394 0 2 727 6603 219 35 14 chr1 18680482 18681948 -178513484 + ORR1B1-int LTR MaLR 13 1509 0 2 727 1058 160 11 0 chr1 18681948 18682123 -178513309 + ORR1B1 LTR MaLR 1 177 -217 2 727 1133 95 0 0 chr1 18682202 18682349 -178513083 + B1_Mm SINE Alu 1 147 0 2 727 3093 258 38 11 chr1 18682379 18683788 -178511644 + Lx7 LINE L1 5262 6735 -725 2 727 2103 32 0 0 chr1 18683807 18684054 -178511378 - L1Md_F2 LINE L1 -262 6320 6074 2 727 2174 61 0 33 chr1 18684054 18684359 -178511073 + L1Md_F2 LINE L1 6288 6582 0 2 727 1746 213 56 15 chr1 18684364 18684760 -178510672 + Lx7 LINE L1 6761 7172 -524 2 727 217 230 33 0 chr1 18684785 18684937 -178510495 + (TA)n Simple_repeat Simple_repeat 2 158 0 2 727 354 368 58 22 chr1 18685061 18685336 -178510096 - B4 SINE B4 -6 286 2 2 727 458 374 44 0 chr1 18685337 18685540 -178509892 + Tigger7 DNA MER2_type 10 221 -2270 2 727 305 282 90 130 chr1 18685714 18685815 -178509617 - Lx7 LINE L1 -13 7683 7556 2 727 383 0 0 21 chr1 18685815 18685863 -178509569 + (TAA)n Simple_repeat Simple_repeat 3 49 0 2 727 663 13 0 0 chr1 18685865 18685941 -178509491 + (GAA)n Simple_repeat Simple_repeat 3 78 0 2 727 305 282 90 130 chr1 18685941 18686006 -178509426 - Lx7 LINE L1 -141 7555 7494 2 727 7237 19 2 0 chr1 18686006 18686826 -178508606 - RLTR13B2 LTR ERVK 0 822 1 2 727 305 282 90 130 chr1 18686826 18687100 -178508332 - Lx7 LINE L1 -203 7493 7260 2 727 377 30 0 56 chr1 18687109 18687180 -178508252 + (TTTTTG)n Simple_repeat Simple_repeat 2 68 0 2 727 1198 235 25 37 chr1 18687192 18687515 -178507917 - Lx9 LINE L1 -348 7296 6978 2 727 495 0 0 0 chr1 18687517 18687572 -178507860 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 727 700 185 41 0 chr1 18687572 18687718 -178507714 + Lx9 LINE L1 7323 7474 -170 2 727 339 85 0 0 chr1 18687720 18687767 -178507665 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 727 414 224 16 16 chr1 18687769 18687896 -178507536 + Lx9 LINE L1 7517 7643 -1 2 727 725 309 81 38 chr1 18689024 18689370 -178506062 + MLT1A0 LTR MaLR 3 363 -2 2 727 15936 138 11 21 chr1 18689887 18693277 -178502155 + L1Md_F LINE L1 380 3744 -2139 2 727 5348 89 24 13 chr1 18693278 18694071 -178501361 + RLTR13D1 LTR ERVK 1 855 0 2 727 4766 195 98 81 chr1 18694088 18695546 -178499886 + ETnERV2-int LTR ERVK 1 1483 -5923 2 727 180 0 0 0 chr1 18695546 18695566 -178499866 + (T)n Simple_repeat Simple_repeat 1 20 0 2 727 1267 78 52 0 chr1 18695596 18695788 -178499644 + ETnERV2-int LTR ERVK 1884 2085 -5321 2 727 2365 168 29 19 chr1 18695814 18696396 -178499036 + ETnERV2-int LTR ERVK 2497 3506 -3900 2 727 6828 88 23 4 chr1 18696445 18697471 -178497961 + L1_Mus1 LINE L1 5509 6562 -5 2 727 195 42 0 0 chr1 18699081 18699105 -178496327 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 727 3383 88 15 4 chr1 18700389 18700869 -178494563 + L1_Mus2 LINE L1 6080 6564 -2 2 727 937 180 40 43 chr1 18700919 18701268 -178494164 - RLTR28B LTR ERVL -23 501 193 2 727 350 237 50 42 chr1 18701276 18701395 -178494037 - RLTR23 LTR ERV1 0 430 311 2 727 1083 166 0 0 chr1 18701854 18702023 -178493409 - RLTR28B LTR ERVL -312 169 1 2 727 537 16 0 0 chr1 18702257 18702319 -178493113 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 727 2080 130 12 0 chr1 18702390 18702712 -178492720 - ORR1A3 LTR MaLR 0 326 1 2 727 285 388 15 8 chr1 18702884 18703014 -178492418 - RLTR19-int LTR ERVK -1461 5089 4959 2 727 1175 242 119 90 chr1 18703273 18704053 -178491379 - RLTR19-int LTR ERVK -2171 3966 3164 2 727 886 264 54 139 chr1 18704203 18705120 -178490312 - RLTR19-int LTR ERVK -3104 3033 1664 2 727 28689 100 9 7 chr1 18705133 18707132 -178488300 + L1_Mus1 LINE L1 217 2240 -3643 2 727 3071 59 8 0 chr1 18707132 18707523 -178487909 + MTA_Mm LTR MaLR 1 394 -2 2 727 28689 120 16 2 chr1 18707523 18711804 -178483628 + L1_Mus1 LINE L1 2241 6566 -1 2 727 327 280 44 22 chr1 18711822 18711957 -178483475 - RLTR19-int LTR ERVK -3516 2006 1869 2 727 1368 258 49 49 chr1 18712241 18712689 -178482743 + RLTR28B LTR ERVL 19 466 -15 2 727 254 159 23 0 chr1 18712833 18712877 -178482555 - RLTR19-int LTR ERVK -3679 1843 1799 2 727 268 155 17 17 chr1 18713226 18713285 -178482147 - RLTR19-int LTR ERVK -5177 960 902 2 727 506 143 163 0 chr1 18714023 18714121 -178481311 + B1_Mus2 SINE Alu 22 135 -12 2 727 189 0 0 0 chr1 18714122 18714143 -178481289 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 727 447 52 0 0 chr1 18714144 18714202 -178481230 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 727 1497 257 99 34 chr1 18714511 18714954 -178480478 - RodERV21-int LTR ERV1 -4063 928 457 2 727 800 246 37 0 chr1 18714982 18715169 -178480263 - RodERV21-int LTR ERV1 -4787 204 11 2 727 798 254 73 13 chr1 18715540 18715787 -178479645 - MTD LTR MaLR -14 405 160 2 727 512 268 9 9 chr1 18716131 18716239 -178479193 + MTD LTR MaLR 1 108 -311 2 727 549 217 36 128 chr1 18716239 18716506 -178478926 - RLTR25A LTR ERVK 0 1028 726 2 727 996 174 107 225 chr1 18716489 18717022 -178478410 - ORR1A3-int LTR MaLR -995 968 499 2 727 2832 243 25 80 chr1 18716945 18718081 -178477351 - RLTR25A LTR ERVK -106 997 1 2 727 419 35 18 0 chr1 18718141 18718198 -178477234 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 727 549 249 23 35 chr1 18718381 18718552 -178476880 - Lx4B LINE L1 -5 7053 6885 2 727 366 316 53 0 chr1 18718552 18718647 -178476785 - RSINE1 SINE B4 -40 125 26 3 727 657 25 0 0 chr1 18718790 18718869 -178476563 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 727 297 0 0 0 chr1 18718869 18718901 -178476531 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 727 408 20 0 0 chr1 18719003 18719052 -178476380 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 727 1120 264 48 69 chr1 18719052 18719471 -178475961 - Lx9 LINE L1 -168 7476 7067 3 727 1732 264 17 0 chr1 18719484 18719904 -178475528 + Lx9 LINE L1 6551 6977 -667 3 727 22393 80 8 1 chr1 18720166 18723894 -178471538 + L1Md_F2 LINE L1 1827 5585 -298 3 727 7240 85 1 8 chr1 18723895 18724898 -178470534 + L1Md_F2 LINE L1 5587 6582 0 3 727 1423 234 35 11 chr1 18724991 18725146 -178470286 + ORR1C2 LTR MaLR 1 165 -219 3 727 306 0 0 0 chr1 18725146 18725180 -178470252 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 727 1423 234 35 11 chr1 18725180 18725399 -178470033 + ORR1C2 LTR MaLR 166 384 0 3 727 796 289 32 53 chr1 18726182 18726467 -178468965 + B4 SINE B4 14 292 0 3 727 243 0 0 0 chr1 18726959 18726986 -178468446 + (T)n Simple_repeat Simple_repeat 1 27 0 3 727 558 368 63 11 chr1 18727107 18727376 -178468056 - B4A SINE B4 -2 290 8 3 727 312 70 0 0 chr1 18727420 18727463 -178467969 + (ATG)n Simple_repeat Simple_repeat 2 44 0 3 727 456 19 0 0 chr1 18727742 18727795 -178467637 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 727 274 276 53 0 chr1 18728917 18728993 -178466439 - ID4 SINE ID -3 80 1 3 727 769 299 155 12 chr1 18729391 18729726 -178465706 - MTD LTR MaLR -19 400 18 3 727 272 328 8 0 chr1 18729927 18730055 -178465377 + L1M5 LINE L1 5159 5287 -859 3 727 3825 244 26 21 chr1 18730613 18731630 -178463802 + Lx7 LINE L1 6367 7389 -307 3 727 3470 103 10 0 chr1 18731932 18732512 -178462920 - MusHAL1 LINE L1 -2126 586 1 3 727 1290 214 14 152 chr1 18732479 18733073 -178462359 - L1Md_F LINE L1 -5380 1139 628 3 727 1376 67 0 0 chr1 18732668 18732847 -178462585 + L1_Mus1 LINE L1 6150 6328 -239 3 727 420 254 23 16 chr1 18733081 18733209 -178462223 - L1Md_F LINE L1 -5813 706 578 3 727 253 299 20 25 chr1 18733221 18733416 -178462016 - L1VL2 LINE L1 -6022 400 108 3 727 449 262 20 129 chr1 18733435 18733648 -178461784 - L1VL2 LINE L1 -6030 392 215 3 727 575 336 54 64 chr1 18735508 18736027 -178459405 + RLTR18B LTR ERVK 1 491 -125 3 727 858 96 74 0 chr1 18736027 18736162 -178459270 - B1_Mus1 SINE Alu -1 147 3 3 727 568 354 53 93 chr1 18736162 18736283 -178459149 + RLTR18B LTR ERVK 492 615 -1 3 727 360 43 0 0 chr1 18736600 18736646 -178458786 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 727 976 301 28 28 chr1 18736665 18736955 -178458477 - B4A SINE B4 -2 290 1 3 727 235 45 22 43 chr1 18738213 18738259 -178457173 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 3 727 1132 279 93 20 chr1 18738263 18738618 -178456814 + MTD LTR MaLR 1 381 -38 3 727 1878 209 26 40 chr1 18738623 18739001 -178456431 - ORR1C1 LTR MaLR -5 373 1 3 727 4753 261 64 15 chr1 18739001 18740302 -178455130 - ORR1C1-int LTR MaLR 0 1370 6 3 727 1681 199 31 44 chr1 18740307 18740512 -178454920 - ORR1C1 LTR MaLR 0 378 171 3 727 594 0 0 0 chr1 18740512 18740578 -178454854 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 727 1681 199 31 44 chr1 18740578 18740755 -178454677 - ORR1C1 LTR MaLR -208 170 3 3 727 412 289 86 40 chr1 18741791 18741989 -178453443 + B3 SINE B2 2 208 -8 3 727 618 367 96 37 chr1 18742046 18742420 -178453012 - MLT1D LTR MaLR -109 396 1 3 727 197 33 0 32 chr1 18742787 18742818 -178452614 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 728 216 405 30 0 chr1 18743894 18744062 -178451370 - MIRc SINE MIR -6 262 90 3 728 226 235 111 56 chr1 18744074 18744164 -178451268 - MTEa LTR MaLR -2 377 283 3 728 255 227 61 0 chr1 18744421 18744487 -178450945 - MLT1A1 LTR MaLR -285 123 54 3 728 260 27 27 0 chr1 18744636 18744673 -178450759 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 728 198 0 0 0 chr1 18745066 18745088 -178450344 + (A)n Simple_repeat Simple_repeat 1 22 0 3 728 496 330 71 60 chr1 18746210 18746394 -178449038 + B3 SINE B2 2 187 -8 3 728 359 293 274 6 chr1 18746400 18746575 -178448857 + ID_B1 SINE B4 2 223 -1 3 728 274 373 26 43 chr1 18746616 18746731 -178448701 + ID_B1 SINE B4 112 224 0 3 728 229 312 54 0 chr1 18746827 18746920 -178448512 + B1F1 SINE Alu 1 98 -51 3 728 1941 170 17 17 chr1 18747046 18747394 -178448038 + ORR1B1 LTR MaLR 39 386 -8 3 728 3327 58 2 0 chr1 18747644 18748060 -178447372 + L1_Mus1 LINE L1 6150 6566 -1 3 728 24 0 0 0 chr1 18748244 18748268 -178447164 + AT_rich Low_complexity Low_complexity 1 24 0 3 728 362 263 49 29 chr1 18749127 18749229 -178446203 - MIR3 SINE MIR -1 207 104 3 728 266 143 57 100 chr1 18749470 18749540 -178445892 - Charlie16a DNA MER1_type -220 122 56 3 728 482 237 34 8 chr1 18749954 18750073 -178445359 + MER5A1 DNA MER1_type 44 165 -1 3 728 925 114 0 13 chr1 18750199 18750350 -178445082 + L1Md_F2 LINE L1 6429 6577 -5 3 728 359 176 135 0 chr1 18750626 18750700 -178444732 + MTE2b LTR MaLR 179 262 -117 3 728 3138 49 8 5 chr1 18750706 18751093 -178444339 + RLTR10 LTR ERVK 1 388 -2 3 728 16014 23 4 5 chr1 18751105 18753050 -178442382 + RLTR10-int LTR ERVK 41 1984 -3 3 728 3015 42 7 81 chr1 18753052 18753471 -178441961 + RLTR10 LTR ERVK 1 388 -2 3 728 325 233 6 27 chr1 18753478 18753576 -178441856 + MTE2b LTR MaLR 268 365 -14 3 728 3217 314 55 24 chr1 18753557 18754653 -178440779 + MTE-int LTR MaLR 6 1135 -445 3 728 534 330 94 21 chr1 18755348 18755583 -178439849 + B4A SINE B4 1 252 -40 3 728 227 179 36 0 chr1 18755668 18755724 -178439708 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 3 728 205 216 40 0 chr1 18755725 18755799 -178439633 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 728 452 282 144 32 chr1 18756109 18756296 -178439136 + B3 SINE B2 1 208 -8 3 728 282 301 36 72 chr1 18758274 18758385 -178437047 + B4A SINE B4 75 181 -111 3 728 435 19 0 0 chr1 18758400 18758452 -178436980 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 728 329 353 53 12 chr1 18759000 18759169 -178436263 + RMER15 LTR ERVL 393 568 -7 3 728 416 333 100 5 chr1 18759171 18759361 -178436071 + Tigger5 DNA MER2_type 2192 2399 -7 3 728 1117 82 0 7 chr1 18760661 18760808 -178434624 - B1_Mus1 SINE Alu -2 146 1 3 728 518 289 49 14 chr1 18761216 18761360 -178434072 - B1F SINE Alu 0 149 1 3 728 403 336 29 7 chr1 18761246 18761384 -178434048 - ID_B1 SINE B4 -25 199 59 3 728 260 326 0 0 chr1 18761384 18761473 -178433959 + Lx8 LINE L1 5830 5918 -1555 3 728 3081 161 76 2 chr1 18761660 18762281 -178433151 + Lx2 LINE L1 6296 6962 -35 3 728 432 0 0 0 chr1 18762292 18762340 -178433092 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 728 4980 144 50 10 chr1 18762361 18763951 -178431481 + L1Md_F LINE L1 312 1967 -1850 3 728 342 243 27 45 chr1 18764053 18764165 -178431267 + L1VL1 LINE L1 283 392 -6030 3 728 2212 192 19 20 chr1 18764410 18764972 -178430460 + L1Md_F LINE L1 617 1208 -5411 3 728 1332 90 0 0 chr1 18764972 18765173 -178430259 - L1_Mm LINE L1 -1494 4389 4189 3 728 315 68 0 0 chr1 18765171 18765215 -178430217 + L1_Mm LINE L1 4843 4886 -997 3 728 3410 93 2 2 chr1 18765226 18765730 -178429702 + L1_Mm LINE L1 5027 5530 -353 3 728 7282 163 10 11 chr1 18765725 18767198 -178428234 - L1_Mur1 LINE L1 -2493 3393 1922 3 728 225 292 11 0 chr1 18767402 18767491 -178427941 + L1_Mur1 LINE L1 758 847 -6135 3 728 903 168 52 0 chr1 18767643 18767816 -178427616 - URR1A DNA MER1_type -1 225 44 3 728 350 374 5 10 chr1 18768349 18768549 -178426883 - Lx8 LINE L1 -828 6645 6447 3 728 219 203 0 0 chr1 18768552 18768611 -178426821 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 728 6221 92 11 1 chr1 18768666 18769584 -178425848 - L1_Mus2 LINE L1 -1 6565 5639 3 728 3508 114 2 17 chr1 18769584 18769921 -178425511 + L1_Mus1 LINE L1 6048 6385 -182 3 728 3319 31 10 0 chr1 18769921 18770313 -178425119 + MTA_Mm LTR MaLR 1 396 0 3 728 7331 80 54 2 chr1 18770313 18771357 -178424075 + MTA_Mm-int LTR MaLR 1 1098 0 3 728 2988 27 79 0 chr1 18771357 18771724 -178423708 + MTA_Mm LTR MaLR 1 396 0 3 728 3508 114 2 17 chr1 18771724 18771912 -178423520 + L1_Mus1 LINE L1 6386 6565 -2 3 728 2036 97 0 3 chr1 18771923 18772224 -178423208 - L1_Mus2 LINE L1 -1007 4876 4577 3 728 7339 99 9 0 chr1 18772217 18773273 -178422159 - L1VL1 LINE L1 -5356 1066 1 3 728 429 161 0 0 chr1 18773269 18773356 -178422076 - L1VL1 LINE L1 -5444 978 892 3 728 1837 203 58 22 chr1 18773324 18773788 -178421644 - L1Md_F LINE L1 -5411 1108 628 3 728 323 293 155 0 chr1 18773790 18773964 -178421468 - L1Md_F LINE L1 -5807 712 512 3 728 357 263 13 147 chr1 18774005 18774161 -178421271 - L1VL1 LINE L1 -6065 357 223 3 728 5984 79 31 1 chr1 18774164 18775034 -178420398 + L1_Mus2 LINE L1 5671 6566 0 3 728 12476 161 20 14 chr1 18775034 18775132 -178420300 + Lx2B LINE L1 3382 3484 -2402 3 728 966 127 0 0 chr1 18775132 18775290 -178420142 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 3 728 12476 158 33 19 chr1 18775290 18778200 -178417232 + Lx2B LINE L1 3485 6444 -614 3 728 1005 231 25 25 chr1 18779126 18779353 -178416079 + Lx6 LINE L1 7216 7444 -16 3 728 219 69 0 0 chr1 18779353 18779382 -178416050 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 3 728 1005 231 25 25 chr1 18779382 18779398 -178416034 + Lx6 LINE L1 7445 7459 -1 3 728 227 196 0 0 chr1 18779589 18779635 -178415797 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 3 728 202 368 77 10 chr1 18779886 18780081 -178415351 + L2 LINE L2 2540 2747 -672 3 728 499 268 121 0 chr1 18782987 18783144 -178412288 + RLTR14 LTR ERV1 10 185 -197 3 728 1179 94 0 0 chr1 18784013 18784237 -178411195 + (TTTC)n Simple_repeat Simple_repeat 1 224 0 3 728 240 26 0 0 chr1 18784280 18784319 -178411113 - L1_Mus2 LINE L1 -1 6565 6527 3 728 520 289 34 52 chr1 18784357 18784624 -178410808 + L1M3e LINE L1 1846 2107 -4923 3 728 25 31 0 0 chr1 18784658 18784690 -178410742 + AT_rich Low_complexity Low_complexity 1 32 0 3 728 873 216 10 21 chr1 18784700 18784894 -178410538 - Lx LINE L1 -122 6532 6341 3 728 1953 97 55 24 chr1 18784891 18785001 -178410431 - L1_Mur2 LINE L1 -311 3603 3476 3 728 273 75 0 0 chr1 18785001 18785041 -178410391 + (TTG)n Simple_repeat Simple_repeat 1 40 0 3 728 14519 137 67 11 chr1 18785041 18785651 -178409781 - L1_Mur2 LINE L1 -626 5251 4821 3 728 1090 61 0 51 chr1 18785651 18785807 -178409625 + B1_Mus1 SINE Alu 1 148 0 3 728 14519 159 74 4 chr1 18785807 18788169 -178407263 - L1_Mur2 LINE L1 -1057 4820 2265 3 728 320 259 86 8 chr1 18788582 18788699 -178406733 + B1_Mus2 SINE Alu 1 126 -21 3 728 307 365 88 0 chr1 18789044 18789214 -178406218 + L1M3e LINE L1 2313 2497 -4611 3 728 33 16 0 75 chr1 18789304 18789371 -178406061 + AT_rich Low_complexity Low_complexity 1 62 0 3 728 447 160 15 0 chr1 18789724 18789815 -178405617 + MTC LTR MaLR 1 93 -326 3 728 183 314 39 0 chr1 18789817 18789868 -178405564 - L2b LINE L2 -18 3357 3305 4 728 1393 179 98 20 chr1 18789957 18790351 -178405081 - RMER17C LTR ERVK -514 444 16 4 728 369 0 0 0 chr1 18790524 18790565 -178404867 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 728 2209 171 47 10 chr1 18790571 18790973 -178404459 + MTC LTR MaLR 5 421 0 4 728 1396 256 33 68 chr1 18790980 18791591 -178403841 - RLTR20B1 LTR ERVK -3 575 1 4 728 4765 183 82 31 chr1 18791593 18791678 -178403754 - MYSERV16_I-int LTR ERVK -2 2324 2229 4 728 588 121 0 0 chr1 18791678 18791769 -178403663 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 728 4765 183 82 31 chr1 18791769 18792880 -178402552 - MYSERV16_I-int LTR ERVK -98 2228 1067 4 728 1651 204 116 59 chr1 18792883 18793357 -178402075 - MYSERV16_I-int LTR ERVK -1391 935 435 4 728 7924 23 1 0 chr1 18793357 18794286 -178401146 + L1Md_T LINE L1 4657 5586 -297 4 728 8534 27 1 0 chr1 18794286 18795281 -178400151 + L1Md_T LINE L1 5587 6582 0 4 728 2051 211 13 16 chr1 18795425 18795899 -178399533 - MYSERV16_I-int LTR ERVK -1884 442 1 4 728 6864 100 5 2 chr1 18796172 18796186 -178399246 - L1_Mus2 LINE L1 0 6566 6552 4 728 1610 58 18 4 chr1 18796186 18796411 -178399021 - L1Md_F3 LINE L1 -14 6570 6343 4 728 6864 101 4 27 chr1 18796411 18797709 -178397723 - L1_Mus2 LINE L1 -15 6551 5313 4 728 15573 125 1 4 chr1 18797706 18800170 -178395262 - L1VL4 LINE L1 -1677 4209 1753 4 728 3319 86 5 0 chr1 18800170 18800614 -178394818 - L1_Mus1 LINE L1 0 6567 6122 4 728 13650 200 27 84 chr1 18800614 18802379 -178393053 - L1VL4 LINE L1 -4124 1762 393 4 728 22 0 0 0 chr1 18802850 18802872 -178392560 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 269 31 0 0 chr1 18803113 18803145 -178392287 - L1_Mm LINE L1 -433 5450 5419 4 728 3658 68 25 8 chr1 18803145 18803635 -178391797 + L1Md_F2 LINE L1 6080 6577 -5 4 728 35 63 0 0 chr1 18803635 18803698 -178391734 + AT_rich Low_complexity Low_complexity 1 63 0 4 728 252 219 123 54 chr1 18803949 18804079 -178391353 + L1M2 LINE L1 4312 4450 -1693 4 728 294 29 0 0 chr1 18804264 18804299 -178391133 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 728 189 0 0 0 chr1 18804386 18804407 -178391025 + (A)n Simple_repeat Simple_repeat 1 21 0 4 728 331 294 36 48 chr1 18804434 18804602 -178390830 + L1M2 LINE L1 4528 4693 -1447 4 728 32396 81 4 19 chr1 18805035 18810216 -178385216 + L1Md_F2 LINE L1 487 5586 -297 4 728 8029 47 1 2 chr1 18810216 18811201 -178384231 + L1Md_F2 LINE L1 5587 6570 -12 4 728 561 324 16 37 chr1 18812302 18812491 -178382941 - B3A SINE B2 -13 185 1 4 728 957 130 7 0 chr1 18812672 18812818 -178382614 - B1_Mus1 SINE Alu 0 148 2 4 728 204 125 0 0 chr1 18812827 18812859 -178382573 + (T)n Simple_repeat Simple_repeat 1 32 0 4 728 286 285 143 18 chr1 18812859 18813027 -178382405 + MER63D DNA AcHobo 160 348 -713 4 728 2259 68 3 22 chr1 18813058 18813374 -178382058 - L1_Mus2 LINE L1 -1 6565 6256 4 728 612 334 128 19 chr1 18813448 18813768 -178381664 + ORR1E LTR MaLR 3 357 -2 4 728 651 128 0 0 chr1 18814019 18814128 -178381304 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 728 5637 260 38 66 chr1 18814156 18814705 -178380727 - Lx6 LINE L1 -185 7275 6738 4 728 243 0 0 0 chr1 18814705 18814732 -178380700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 728 5637 256 26 74 chr1 18814732 18816105 -178379327 - Lx6 LINE L1 -723 6737 5399 4 728 3324 187 62 3 chr1 18816109 18816829 -178378603 + Lx6 LINE L1 4630 5392 -488 4 728 465 323 116 69 chr1 18816961 18817237 -178378195 + B4A SINE B4 4 292 0 4 728 1178 97 6 0 chr1 18817652 18817827 -178377605 + (GGAAA)n Simple_repeat Simple_repeat 4 179 0 4 728 31 0 0 0 chr1 18818015 18818046 -178377386 + AT_rich Low_complexity Low_complexity 1 31 0 4 728 645 236 7 0 chr1 18818627 18818767 -178376665 + B1_Mur2 SINE Alu 2 142 -7 4 728 23 0 0 0 chr1 18818886 18818909 -178376523 + AT_rich Low_complexity Low_complexity 1 23 0 4 728 4384 49 22 24 chr1 18820338 18820926 -178374506 + L1_Mus2 LINE L1 5980 6566 0 4 728 25 0 0 0 chr1 18820926 18820951 -178374481 + AT_rich Low_complexity Low_complexity 1 25 0 4 728 22 0 0 0 chr1 18820995 18821017 -178374415 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 644 109 27 0 chr1 18821895 18822005 -178373427 + (TTTTC)n Simple_repeat Simple_repeat 2 114 0 4 728 199 57 54 54 chr1 18822063 18822119 -178373313 + A-rich Low_complexity Low_complexity 2 57 0 4 728 15122 100 11 2 chr1 18822209 18825156 -178370276 - L1_Mus1 LINE L1 0 6567 3591 4 728 822 289 9 9 chr1 18825742 18825962 -178369470 + ID_B1 SINE B4 2 221 -3 4 728 369 0 0 0 chr1 18826081 18826122 -178369310 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 728 294 269 25 13 chr1 18827294 18827373 -178368059 + ID4_ SINE ID 4 83 0 4 728 333 129 0 0 chr1 18827373 18827443 -178367989 + (A)n Simple_repeat Simple_repeat 1 70 0 4 728 476 282 39 79 chr1 18827451 18827705 -178367727 + Lx8 LINE L1 7210 7453 -20 4 728 30 27 0 0 chr1 18827735 18827772 -178367660 + AT_rich Low_complexity Low_complexity 1 37 0 4 728 2332 117 13 8 chr1 18827786 18828158 -178367274 - L1_Mus3 LINE L1 -5 6633 6260 4 728 316 109 0 0 chr1 18828167 18828213 -178367219 - L1_Mur1 LINE L1 -321 5565 5520 4 728 26755 123 17 1 chr1 18828216 18831390 -178364042 - L1VL1 LINE L1 -309 5574 2352 4 728 306 0 0 0 chr1 18831390 18831424 -178364008 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 728 26755 115 9 18 chr1 18831424 18833365 -178362067 - L1VL1 LINE L1 -3532 2351 421 4 728 1520 259 73 38 chr1 18833402 18834156 -178361276 - Lx9 LINE L1 -1398 6075 5274 4 728 240 256 177 13 chr1 18834291 18834370 -178361062 + Lx9 LINE L1 5866 5957 -1687 4 728 375 78 0 0 chr1 18835125 18835176 -178360256 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 728 23 0 0 0 chr1 18835213 18835236 -178360196 + AT_rich Low_complexity Low_complexity 1 23 0 4 728 30 69 0 0 chr1 18835248 18835306 -178360126 + AT_rich Low_complexity Low_complexity 1 58 0 4 728 26 74 0 0 chr1 18835324 18835378 -178360054 + AT_rich Low_complexity Low_complexity 1 54 0 4 728 3204 48 33 5 chr1 18835840 18836261 -178359171 - RLTR13B1 LTR ERVK -10 883 451 4 728 4328 72 35 11 chr1 18836253 18836860 -178358572 - RLTR13B3 LTR ERVK -308 621 1 4 728 22 0 0 0 chr1 18837022 18837044 -178358388 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 4150 80 9 0 chr1 18837075 18837625 -178357807 - L1_Mus1 LINE L1 -1 6566 6012 4 728 23 0 0 0 chr1 18837709 18837732 -178357700 + AT_rich Low_complexity Low_complexity 1 23 0 4 728 279 0 0 0 chr1 18838068 18838099 -178357333 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 4 728 755 299 0 0 chr1 18838108 18838282 -178357150 - B3 SINE B2 -37 179 6 4 728 32 26 0 0 chr1 18840371 18840410 -178355022 + AT_rich Low_complexity Low_complexity 1 39 0 4 728 25 75 0 0 chr1 18840933 18840986 -178354446 + AT_rich Low_complexity Low_complexity 1 53 0 4 728 21 36 0 0 chr1 18842111 18842139 -178353293 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 733 377 44 22 chr1 18842337 18842795 -178352637 - MER82 DNA MER2_type -10 643 176 4 728 518 326 56 0 chr1 18842817 18843032 -178352400 - MER82 DNA MER2_type -420 233 7 4 728 23 0 0 0 chr1 18843104 18843127 -178352305 + AT_rich Low_complexity Low_complexity 1 23 0 4 728 180 0 0 0 chr1 18843502 18843522 -178351910 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 728 5136 87 0 0 chr1 18844686 18845374 -178350058 - L1_Mus1 LINE L1 0 6567 5880 4 728 3226 94 180 5 chr1 18845375 18845922 -178349510 + L1_Mus1 LINE L1 5263 5927 -229 4 728 211 356 33 0 chr1 18845970 18846060 -178349372 - MER5A DNA MER1_type -94 95 3 4 728 537 305 14 14 chr1 18846259 18846402 -178349030 - RSINE1 SINE B4 -12 153 11 4 728 438 36 0 0 chr1 18846676 18846732 -178348700 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 728 380 253 128 70 chr1 18847192 18847379 -178348053 - B3A SINE B2 0 198 1 4 728 410 164 148 24 chr1 18849135 18849304 -178346128 - RMER17C LTR ERVK -141 269 80 4 728 510 202 10 16 chr1 18851585 18851705 -178343727 + PB1D9 SINE Alu 3 120 0 4 728 428 219 180 132 chr1 18851868 18852035 -178343397 + B3A SINE B2 1 182 -16 4 728 320 0 0 24 chr1 18852035 18852076 -178343356 + (TAA)n Simple_repeat Simple_repeat 2 41 0 4 728 428 219 180 132 chr1 18852076 18852097 -178343335 + B3A SINE B2 183 198 0 4 728 194 0 0 37 chr1 18852777 18852804 -178342628 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 728 24 0 0 0 chr1 18854301 18854325 -178341107 + AT_rich Low_complexity Low_complexity 1 24 0 4 728 4617 33 9 4 chr1 18854815 18855367 -178340065 - L1Md_F3 LINE L1 0 6584 6030 4 728 353 317 41 34 chr1 18855746 18855893 -178339539 + Tigger7 DNA MER2_type 23 170 -2321 4 728 540 340 58 21 chr1 18855910 18856150 -178339282 + Tigger7 DNA MER2_type 221 469 -2022 4 728 294 333 89 11 chr1 18856213 18856392 -178339040 + Tigger7 DNA MER2_type 2299 2491 0 4 728 712 209 72 0 chr1 18856844 18856983 -178338449 - ORR1B2 LTR MaLR 0 367 219 4 728 203 156 0 0 chr1 18856987 18857019 -178338413 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 4 728 28 0 0 0 chr1 18857020 18857048 -178338384 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 30 69 0 0 chr1 18857123 18857181 -178338251 + AT_rich Low_complexity Low_complexity 1 58 0 4 728 333 0 0 0 chr1 18857747 18857784 -178337648 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 728 477 76 0 0 chr1 18858115 18858181 -178337251 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 728 503 345 71 85 chr1 18858417 18858781 -178336651 - ORR1E LTR MaLR 0 359 1 4 728 1470 342 168 26 chr1 18858781 18859600 -178335832 - ORR1E-int LTR MaLR -53 1527 589 4 728 1023 9 0 0 chr1 18859605 18859721 -178335711 + (GGGAGA)n Simple_repeat Simple_repeat 6 121 0 4 728 383 365 7 7 chr1 18859721 18859859 -178335573 - B3A SINE B2 -18 180 43 4 728 539 328 15 19 chr1 18859872 18860077 -178335355 - ORR1E-int LTR MaLR -1315 265 62 4 728 753 345 74 24 chr1 18860126 18860462 -178334970 - ORR1E LTR MaLR -6 353 1 4 728 1550 328 78 23 chr1 18860579 18861319 -178334113 - Lx8 LINE L1 -101 7372 6592 4 728 453 19 0 0 chr1 18862016 18862070 -178333362 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 728 877 263 187 3 chr1 18862197 18862502 -178332930 - Lx8 LINE L1 0 7473 7113 4 728 35311 37 0 0 chr1 18862505 18867739 -178327693 + L1Md_T LINE L1 259 5589 -297 4 728 8898 10 0 0 chr1 18867739 18868735 -178326697 + L1Md_T LINE L1 5590 6585 0 4 728 1161 288 22 27 chr1 18868752 18869156 -178326276 + Lx8 LINE L1 6547 6948 -525 4 728 378 0 0 0 chr1 18869271 18869313 -178326119 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 728 20337 47 6 1 chr1 18869313 18872550 -178322882 - L1Md_F3 LINE L1 -24 6560 3308 4 728 378 322 146 7 chr1 18872571 18872715 -178322717 + RSINE1 SINE B4 2 165 0 4 728 349 248 8 15 chr1 18872755 18872886 -178322546 + Lx9 LINE L1 7512 7641 -3 4 728 312 91 0 0 chr1 18873268 18873312 -178322120 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 728 4723 67 11 0 chr1 18873391 18874003 -178321429 - L1_Mus1 LINE L1 -244 6323 5705 5 728 1779 84 0 0 chr1 18874003 18874240 -178321192 + L1_Mus1 LINE L1 6331 6567 0 5 729 1552 144 11 0 chr1 18874382 18874646 -178320786 - L1_Mm LINE L1 -626 5257 4991 5 729 192 77 0 0 chr1 18874647 18874673 -178320759 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 729 1466 135 108 0 chr1 18874673 18874933 -178320499 - ORR1A2 LTR MaLR -39 288 1 5 729 452 154 13 0 chr1 18874933 18875011 -178320421 - L1_Mur2 LINE L1 -3297 2580 2502 5 729 1172 112 12 17 chr1 18875011 18875023 -178320409 - B2_Mm2 SINE B2 -24 171 162 5 729 225 0 0 0 chr1 18875023 18875048 -178320384 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 729 1172 112 12 17 chr1 18875048 18875207 -178320225 - B2_Mm2 SINE B2 -34 161 1 5 729 1849 175 50 0 chr1 18875208 18875568 -178319864 - L1_Mur2 LINE L1 -3365 2512 2135 5 729 10729 105 10 4 chr1 18875567 18877215 -178318217 - L1VL1 LINE L1 -756 2942 1284 5 729 7496 62 12 3 chr1 18877206 18878417 -178317015 - L1Md_F2 LINE L1 0 6582 5365 5 729 3704 89 0 0 chr1 18878411 18878916 -178316516 + L1Md_F2 LINE L1 4855 5359 -524 5 729 1687 107 91 2 chr1 18878912 18879246 -178316186 - L1VL1 LINE L1 -2396 1302 949 5 729 7404 74 16 2 chr1 18879222 18880351 -178315081 - L1Md_F2 LINE L1 -8 6574 5434 5 729 4032 192 51 57 chr1 18880350 18881281 -178314151 - L1VL1 LINE L1 -2790 909 6 5 729 3911 120 4 63 chr1 18881282 18881362 -178314070 - L1_Mm LINE L1 -881 5002 4928 5 729 1078 82 7 0 chr1 18881362 18881508 -178313924 + B1_Mus1 SINE Alu 2 148 0 5 729 3911 120 4 63 chr1 18881508 18881669 -178313763 - L1_Mm LINE L1 -956 4927 4794 5 729 1174 54 145 0 chr1 18881669 18881835 -178313597 - B2_Mm1a SINE B2 -3 190 1 5 729 3911 120 4 63 chr1 18881835 18882270 -178313162 - L1_Mm LINE L1 -1090 4793 4365 5 729 3162 130 2 0 chr1 18882273 18882751 -178312681 + L1_Mm LINE L1 5205 5683 -200 5 729 1434 49 0 0 chr1 18882776 18882960 -178312472 - L1Md_A LINE L1 0 6582 6399 5 729 3398 42 0 0 chr1 18882960 18883368 -178312064 + L1Md_T LINE L1 5979 6386 -196 5 729 6525 99 30 7 chr1 18883348 18884307 -178311125 + L1_Mus3 LINE L1 5655 6635 -3 5 729 301 132 8 50 chr1 18884371 18884491 -178310941 + T-rich Low_complexity Low_complexity 2 116 0 5 729 22 0 0 0 chr1 18884526 18884548 -178310884 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 24 53 0 0 chr1 18884852 18884890 -178310542 + AT_rich Low_complexity Low_complexity 1 38 0 5 729 330 325 131 29 chr1 18885584 18885825 -178309607 - MIRb SINE MIR 0 262 5 5 729 6984 223 66 63 chr1 18885882 18886793 -178308639 - Lx7 LINE L1 0 7696 6826 5 729 3572 85 14 4 chr1 18886793 18887289 -178308143 - Lx3_Mus LINE L1 0 7009 6509 5 729 6984 224 65 62 chr1 18887289 18888386 -178307046 - Lx7 LINE L1 -871 6825 5694 5 729 286 256 24 24 chr1 18888414 18888498 -178306934 + Lx8 LINE L1 7049 7132 -341 5 729 221 57 29 0 chr1 18888542 18888577 -178306855 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 729 369 33 16 16 chr1 18888609 18888671 -178306761 - L1Md_F2 LINE L1 -1 6581 6520 5 729 222 159 23 0 chr1 18888912 18888956 -178306476 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 5 729 970 178 111 10 chr1 18889924 18890123 -178305309 + URR1B DNA MER1_type 7 225 0 5 729 8071 28 1 0 chr1 18890169 18891399 -178304033 - L1Md_T LINE L1 0 6582 5352 5 729 4241 146 20 1 chr1 18891587 18892273 -178303159 - Lx4A LINE L1 0 7058 6360 5 729 474 18 0 0 chr1 18892534 18892589 -178302843 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 729 392 291 73 29 chr1 18893056 18893261 -178302171 - MIR SINE MIR 0 262 49 5 729 531 0 0 0 chr1 18894619 18894678 -178300754 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 729 382 302 28 19 chr1 18894769 18894877 -178300555 - MER5A1 DNA MER1_type -48 118 10 5 729 441 206 0 1 chr1 18895731 18895817 -178299615 + B2_Mm2 SINE B2 1 85 -113 5 729 338 293 8 41 chr1 18895878 18895899 -178299533 + MT2B LTR ERVL 144 160 -441 5 729 523 250 85 15 chr1 18895899 18896029 -178299403 + B1_Mur1 SINE Alu 2 140 -9 5 729 203 161 0 0 chr1 18896029 18896060 -178299372 + (CAT)n Simple_repeat Simple_repeat 3 33 0 5 729 245 352 28 0 chr1 18896727 18896798 -178298634 + ID4_ SINE ID 8 80 -3 5 729 312 102 0 0 chr1 18897220 18897269 -178298163 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 729 237 33 0 0 chr1 18897267 18897297 -178298135 + (CAT)n Simple_repeat Simple_repeat 3 32 0 5 729 940 79 0 14 chr1 18897306 18897447 -178297985 + (TTC)n Simple_repeat Simple_repeat 2 140 0 5 729 1141 88 0 0 chr1 18897982 18898130 -178297302 - B1_Mus1 SINE Alu 0 148 1 5 729 7236 79 11 3 chr1 18898576 18900137 -178295295 - L1_Mus1 LINE L1 -4 6563 4988 5 729 310 320 41 10 chr1 18900258 18900356 -178295076 + PB1D10 SINE Alu 3 103 -14 5 729 22 0 0 0 chr1 18901599 18901621 -178293811 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 278 325 65 0 chr1 18902555 18902678 -178292754 + RMER15 LTR ERVL 275 405 -170 5 729 834 181 91 19 chr1 18903300 18903508 -178291924 + Lx4B LINE L1 6788 7010 -48 5 729 27381 119 8 13 chr1 18904035 18909923 -178285509 - L1_Mus1 LINE L1 0 6654 725 5 729 449 262 20 7 chr1 18909920 18910070 -178285362 - L1_Mus1 LINE L1 -5801 815 664 5 729 383 324 12 78 chr1 18910076 18910411 -178285021 - L1VL1 LINE L1 -5918 504 192 5 729 376 339 9 0 chr1 18913318 18913427 -178282005 + MER94 DNA AcHobo 5 114 -20 5 729 701 234 7 7 chr1 18913827 18913969 -178281463 + B1_Mur3 SINE Alu 2 143 -6 5 729 406 298 34 9 chr1 18914313 18914445 -178280987 + B1F SINE Alu 1 140 -9 5 729 317 216 182 55 chr1 18914682 18914768 -178280664 + L1MB7 LINE L1 5725 5823 -361 5 729 3445 39 2 2 chr1 18914768 18915182 -178280250 + L1Md_F2 LINE L1 6169 6582 0 5 729 317 216 182 55 chr1 18915182 18915276 -178280156 + L1MB7 LINE L1 5824 5928 -256 5 729 285 98 0 0 chr1 18915738 18915779 -178279653 + (ATGGTG)n Simple_repeat Simple_repeat 5 45 0 5 729 368 288 42 17 chr1 18915878 18915998 -178279434 - PB1 SINE Alu -4 123 1 5 729 682 242 66 59 chr1 18916545 18916797 -178278635 + L1ME1 LINE L1 5563 5817 -362 5 729 918 161 27 27 chr1 18916797 18916982 -178278450 - B2_Mm2 SINE B2 -10 185 1 5 729 682 261 69 51 chr1 18916982 18917123 -178278309 + L1ME1 LINE L1 5818 5966 -218 5 729 234 312 21 10 chr1 18917450 18917547 -178277885 - MLT1I LTR MaLR -7 404 307 5 729 36399 14 1 7 chr1 18917656 18922866 -178272566 + L1Md_A LINE L1 412 5586 -297 5 729 8503 22 8 0 chr1 18922866 18923853 -178271579 + L1Md_A LINE L1 5587 6581 -1 5 729 572 300 88 6 chr1 18923896 18924067 -178271365 + B3 SINE B2 27 211 -5 5 729 367 338 72 92 chr1 18924119 18924370 -178271062 + B4 SINE B4 36 281 -11 5 729 297 0 0 0 chr1 18924451 18924484 -178270948 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 729 337 116 14 14 chr1 18924505 18924575 -178270857 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 729 297 0 0 0 chr1 18924575 18924608 -178270824 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 729 333 0 0 0 chr1 18924671 18924708 -178270724 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 729 343 155 12 12 chr1 18924729 18924814 -178270618 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 729 810 291 10 0 chr1 18924855 18925051 -178270381 - B3 SINE B2 -1 215 18 5 729 216 0 0 0 chr1 18925910 18925934 -178269498 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 729 2087 74 7 7 chr1 18927565 18927852 -178267580 - L1Md_F2 LINE L1 -1 6581 6295 5 729 5784 34 1 0 chr1 18927975 18928659 -178266773 + L1Md_T LINE L1 5897 6581 -1 5 729 1042 67 0 0 chr1 18928659 18928793 -178266639 + ORR1A1 LTR MaLR 162 295 -51 5 729 305 312 0 72 chr1 18928855 18928938 -178266494 + RSINE1 SINE B4 68 144 -21 5 729 405 39 0 0 chr1 18928956 18929007 -178266425 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 729 29165 114 13 8 chr1 18929773 18935585 -178259847 - L1_Mus2 LINE L1 0 6566 725 5 729 490 237 44 7 chr1 18935593 18935729 -178259703 - L1_Mus2 LINE L1 -5813 803 663 5 729 403 282 14 41 chr1 18935779 18936015 -178259417 - L1VL1 LINE L1 -6025 397 84 5 729 774 188 0 7 chr1 18936190 18936340 -178259092 + URR1B DNA MER1_type 68 216 -9 5 729 1710 255 99 29 chr1 18936340 18936576 -178258856 - Lx8 LINE L1 -737 6736 6479 5 729 2083 61 7 11 chr1 18936576 18936858 -178258574 - L1Md_F2 LINE L1 -14 6568 6288 5 729 1710 255 99 29 chr1 18936858 18937179 -178258253 - Lx8 LINE L1 -995 6478 6140 5 729 1357 158 27 34 chr1 18937184 18937478 -178257954 - Lx2A1 LINE L1 0 7008 6717 5 729 592 247 176 0 chr1 18937972 18938154 -178257278 + ID_B1 SINE B4 7 220 -4 5 729 254 29 29 0 chr1 18938721 18938756 -178256676 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 729 540 336 0 0 chr1 18938757 18938897 -178256535 - RSINE1 SINE B4 -24 141 2 5 729 919 199 48 38 chr1 18939664 18939873 -178255559 + B3 SINE B2 6 216 0 5 729 622 122 25 64 chr1 18939958 18940069 -178255363 + Lx2 LINE L1 6846 6952 -45 5 729 3200 49 18 3 chr1 18940069 18940458 -178254974 - MTA_Mm LTR MaLR -1 395 1 5 729 622 122 25 64 chr1 18940458 18940503 -178254929 + Lx2 LINE L1 6953 6996 -1 5 729 217 96 0 103 chr1 18940935 18940993 -178254439 + A-rich Low_complexity Low_complexity 3 54 0 5 729 341 287 46 0 chr1 18941220 18941328 -178254104 - PB1D10 SINE Alu 0 117 5 5 729 323 167 32 48 chr1 18941412 18941538 -178253894 + (TG)n Simple_repeat Simple_repeat 1 124 0 5 729 578 311 22 16 chr1 18941599 18941782 -178253650 - B4A SINE B4 -60 232 49 5 729 7107 58 25 2 chr1 18941786 18942840 -178252592 - L1Md_F2 LINE L1 0 6582 5530 5 729 550 302 72 3 chr1 18943046 18943352 -178252080 - L1MA6 LINE L1 -179 6121 5795 5 729 25 0 0 0 chr1 18943435 18943460 -178251972 + AT_rich Low_complexity Low_complexity 1 25 0 5 729 238 226 32 0 chr1 18943654 18943716 -178251716 + CT-rich Low_complexity Low_complexity 2 65 0 5 729 1086 95 0 0 chr1 18943804 18943951 -178251481 + B1_Mus1 SINE Alu 1 147 -1 5 729 270 0 0 0 chr1 18945621 18945651 -178249781 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 729 443 63 16 0 chr1 18945651 18945713 -178249719 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 729 263 196 0 35 chr1 18947726 18947784 -178247648 - L1MA9 LINE L1 -1 6311 6256 5 729 495 87 0 0 chr1 18948179 18948248 -178247184 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 729 298 207 32 75 chr1 18948248 18948342 -178247090 - L1M2 LINE L1 -538 5774 5685 6 729 24 32 0 0 chr1 18948478 18948509 -178246923 + AT_rich Low_complexity Low_complexity 1 31 0 6 729 234 0 0 0 chr1 18949687 18949713 -178245719 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 729 372 111 0 0 chr1 18949842 18949905 -178245527 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 6 729 597 290 7 27 chr1 18950019 18950168 -178245264 + RSINE1 SINE B4 18 163 -2 6 729 468 0 0 0 chr1 18950827 18950879 -178244553 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 729 500 126 11 0 chr1 18951437 18951524 -178243908 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 729 200 369 51 51 chr1 18952653 18952770 -178242662 + MIRc SINE MIR 16 132 -136 6 729 186 133 0 0 chr1 18953065 18953095 -178242337 + (A)n Simple_repeat Simple_repeat 1 30 0 6 729 707 273 5 76 chr1 18953099 18953309 -178242123 - B3A SINE B2 -1 197 3 6 729 468 0 0 0 chr1 18954568 18954620 -178240812 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 729 537 306 18 30 chr1 18955031 18955196 -178240236 + RSINE1 SINE B4 2 164 -1 6 729 185 65 32 0 chr1 18955202 18955233 -178240199 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 729 25 0 0 0 chr1 18955278 18955303 -178240129 + AT_rich Low_complexity Low_complexity 1 25 0 6 729 2266 145 12 32 chr1 18955333 18955740 -178239692 + Lx4B LINE L1 6659 7057 -1 6 729 358 257 88 71 chr1 18955763 18956002 -178239430 + L1MA4 LINE L1 5759 6001 -299 6 729 1595 120 2 2 chr1 18956099 18956345 -178239087 + Lx LINE L1 5587 5826 -348 6 729 4023 101 12 30 chr1 18956345 18956946 -178238486 + Lx LINE L1 6060 6649 -5 6 729 350 260 8 24 chr1 18956998 18957124 -178238308 + (TATATG)n Simple_repeat Simple_repeat 6 129 0 6 729 250 287 39 0 chr1 18957982 18958111 -178237321 - Lx9 LINE L1 -1 7643 7510 6 729 216 0 0 0 chr1 18958171 18958195 -178237237 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 729 660 267 191 6 chr1 18958195 18958515 -178236917 - Lx9 LINE L1 -128 7516 7138 6 729 2989 193 137 109 chr1 18958552 18959506 -178235926 - RMER1B Other Other -36 1030 50 6 729 242 261 29 0 chr1 18959785 18959854 -178235578 + C-rich Low_complexity Low_complexity 6 76 0 6 729 334 164 0 40 chr1 18959915 18959991 -178235441 - Lx9 LINE L1 -496 7148 7076 6 729 2734 172 50 22 chr1 18960018 18960560 -178234872 + RMER15 LTR ERVL 12 568 -7 6 729 308 275 0 12 chr1 18960638 18960719 -178234713 - B4 SINE B4 -209 83 4 6 729 542 323 6 6 chr1 18961527 18961683 -178233749 - RSINE1 SINE B4 -5 160 5 6 729 200 203 34 0 chr1 18962104 18962163 -178233269 + A-rich Low_complexity Low_complexity 3 63 0 6 729 1085 95 0 0 chr1 18962171 18962318 -178233114 + B1_Mus1 SINE Alu 2 148 0 6 729 28 0 0 0 chr1 18962325 18962353 -178233079 + AT_rich Low_complexity Low_complexity 1 28 0 6 729 986 84 0 7 chr1 18962353 18962496 -178232936 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 6 729 457 73 0 0 chr1 18962648 18962716 -178232716 + L1_Mus2 LINE L1 6499 6566 0 6 729 445 263 8 17 chr1 18964412 18964532 -178230900 - ID_B1 SINE B4 -105 119 1 6 729 30 59 0 0 chr1 18965872 18965923 -178229509 + AT_rich Low_complexity Low_complexity 1 51 0 6 729 21 36 0 0 chr1 18969450 18969478 -178225954 + AT_rich Low_complexity Low_complexity 1 28 0 6 729 298 310 0 0 chr1 18971013 18971100 -178224332 - MIR SINE MIR -70 192 106 6 729 513 248 50 50 chr1 18971907 18971926 -178223506 + ID_B1 SINE B4 64 224 0 6 729 748 193 0 14 chr1 18971926 18972068 -178223364 + B1_Mur1 SINE Alu 10 149 0 6 729 186 43 0 0 chr1 18972091 18972114 -178223318 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 729 225 0 0 0 chr1 18972556 18972581 -178222851 + (A)n Simple_repeat Simple_repeat 1 25 0 6 729 359 257 70 52 chr1 18973691 18973806 -178221626 - PB1D7 SINE Alu -1 119 3 6 729 2927 84 2 10 chr1 18973820 18974228 -178221204 - L1Md_F2 LINE L1 -13 6569 6165 6 729 241 320 103 100 chr1 18974334 18974664 -178220768 - LTR84a LTR ERVL -418 339 9 6 729 454 282 94 9 chr1 18974916 18975083 -178220349 + ORR1D2 LTR MaLR 212 379 0 6 729 23 33 0 0 chr1 18975110 18975140 -178220292 + AT_rich Low_complexity Low_complexity 1 30 0 6 729 633 219 9 0 chr1 18975292 18975406 -178220026 + B1_Mur3 SINE Alu 1 115 -34 6 729 236 211 24 84 chr1 18975334 18975417 -178220015 + RLTR25B LTR ERVK 444 521 -507 6 729 546 57 0 0 chr1 18975556 18975626 -178219806 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 6 729 1191 179 34 30 chr1 18975908 18976144 -178219288 - Lx2 LINE L1 0 6997 6761 6 729 1210 126 6 0 chr1 18976144 18976319 -178219113 - Lx2 LINE L1 -367 6630 6455 6 729 27 29 0 0 chr1 18976407 18976441 -178218991 + AT_rich Low_complexity Low_complexity 1 34 0 6 729 283 354 39 77 chr1 18976441 18976778 -178218654 - Lx8 LINE L1 -3 7470 7147 6 729 1292 276 61 32 chr1 18976795 18977267 -178218165 + RCHARR1 DNA MER1_type 10 495 -479 6 729 878 259 25 76 chr1 18977302 18977540 -178217892 + B4A SINE B4 66 291 -1 6 729 1233 247 37 23 chr1 18977645 18977993 -178217439 + RCHARR1 DNA MER1_type 622 974 0 6 729 198 0 0 0 chr1 18978555 18978577 -178216855 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 729 319 218 27 18 chr1 18978578 18978690 -178216742 + (TTAGGG)n Simple_repeat Simple_repeat 5 117 0 6 729 468 281 53 34 chr1 18978869 18979075 -178216357 - Tigger5 DNA MER2_type -1 2405 2196 6 729 694 281 38 19 chr1 18979182 18979392 -178216040 + B3 SINE B2 3 216 0 6 729 24 32 0 0 chr1 18979593 18979624 -178215808 + AT_rich Low_complexity Low_complexity 1 31 0 6 729 666 273 91 0 chr1 18980539 18980737 -178214695 + B3 SINE B2 1 216 0 6 729 1685 74 0 0 chr1 18980786 18981003 -178214429 - L1_Mus1 LINE L1 -1 6566 6350 6 729 2112 79 0 0 chr1 18981003 18981281 -178214151 + L1_Mus1 LINE L1 5739 6016 -551 6 729 459 0 0 0 chr1 18981408 18981459 -178213973 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 729 2971 258 42 48 chr1 18982013 18983205 -178212227 + Lx9 LINE L1 4039 5223 -624 6 729 1671 26 0 0 chr1 18983244 18983436 -178211996 - L1Md_F2 LINE L1 -422 6160 5969 6 729 3340 40 2 0 chr1 18983436 18983841 -178211591 + L1Md_F2 LINE L1 6166 6571 -11 6 729 939 225 31 48 chr1 18983846 18984136 -178211296 + Lx9 LINE L1 5260 5544 -303 6 729 279 279 23 23 chr1 18984461 18984549 -178210883 + RMER1C Other Other 42 129 -1213 6 729 1337 176 73 14 chr1 18984633 18984921 -178210511 + RMER1C Other Other 1037 1341 -1 6 729 955 234 113 19 chr1 18984918 18985256 -178210176 + Lx9 LINE L1 5532 5932 -1712 6 729 807 328 73 82 chr1 18985303 18985824 -178209608 + Lx9 LINE L1 6106 6634 -1010 6 729 3153 53 5 0 chr1 18985824 18986218 -178209214 - MTA_Mm LTR MaLR 0 396 1 6 729 807 328 73 82 chr1 18986218 18986378 -178209054 + Lx9 LINE L1 6635 6781 -863 6 729 3881 39 6 0 chr1 18986791 18987257 -178208175 - L1Md_F2 LINE L1 -12 6570 6102 6 729 477 0 0 0 chr1 18987536 18987589 -178207843 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 729 31 26 0 0 chr1 18988470 18988508 -178206924 + AT_rich Low_complexity Low_complexity 1 38 0 6 729 220 384 70 10 chr1 18988532 18988632 -178206800 + PB1D10 SINE Alu 4 109 -8 6 729 2103 333 33 16 chr1 18989009 18989881 -178205551 + Lx8 LINE L1 6215 7101 -372 6 729 189 121 0 0 chr1 18989963 18989996 -178205436 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 6 729 262 291 76 17 chr1 18990271 18990390 -178205042 + L1MC LINE L1 2564 2689 -3457 6 729 222 174 0 0 chr1 18990415 18990461 -178204971 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 729 655 253 30 65 chr1 18990461 18990630 -178204802 - RSINE1 SINE B4 0 165 3 6 729 4207 77 2 2 chr1 18990758 18991321 -178204111 - L1Md_F2 LINE L1 -3 6579 6017 6 729 22 35 0 0 chr1 18991330 18991359 -178204073 + AT_rich Low_complexity Low_complexity 1 29 0 6 729 47 33 0 0 chr1 18991650 18991711 -178203721 + AT_rich Low_complexity Low_complexity 1 61 0 6 729 292 287 57 16 chr1 18991716 18991840 -178203592 + B2_Mm2 SINE B2 37 165 -30 6 729 436 353 30 0 chr1 18991906 18992107 -178203325 + L1M4 LINE L1 3984 4190 -1956 6 729 824 289 132 18 chr1 18992412 18992799 -178202633 + Tigger7 DNA MER2_type 2040 2470 -21 6 729 428 308 67 17 chr1 18992955 18993074 -178202358 - RSINE1 SINE B4 -32 133 9 6 729 11620 160 23 5 chr1 18993292 18996303 -178199129 - Lx3C LINE L1 -4 6972 3897 6 729 459 279 141 4 chr1 18996461 18996688 -178198744 - RLTR10A LTR ERVK 0 411 154 6 729 1782 210 16 29 chr1 18996725 18997211 -178198221 - RLTR45-int LTR ERVK -202 7042 6522 6 729 568 263 39 39 chr1 18997316 18997572 -178197860 - RLTR45-int LTR ERVK -1461 5081 4862 6 729 1352 329 53 52 chr1 18997583 18999015 -178196417 - RLTR45-int LTR ERVK -1885 4657 3224 6 729 355 261 47 47 chr1 18999022 18999171 -178196261 - RLTR45-int LTR ERVK -4153 2389 2241 6 729 414 193 61 52 chr1 18999409 18999524 -178195908 - RLTR10-int LTR ERVK -1554 433 318 6 729 558 234 180 53 chr1 18999542 18999786 -178195646 - RLTR10A LTR ERVK -2 409 135 6 729 490 202 125 52 chr1 18999863 18999999 -178195433 + Lx9 LINE L1 6441 6586 -1058 6 729 4127 234 41 7 chr1 19000059 19001129 -178194303 + Lx9 LINE L1 6537 7643 -1 1 729 1135 267 129 6 chr1 19001267 19001545 -178193887 - MTD LTR MaLR -2 417 96 2 729 3443 30 2 0 chr1 19001545 19001940 -178193492 + MTA_Mm LTR MaLR 1 396 0 3 729 1135 267 129 6 chr1 19001940 19002026 -178193406 - MTD LTR MaLR -324 95 9 2 729 918 269 49 52 chr1 19002143 19002374 -178193058 + B4 SINE B4 6 233 -59 4 729 1905 192 26 36 chr1 19002374 19002795 -178192637 - MTC LTR MaLR 0 421 5 5 729 918 269 49 52 chr1 19002795 19002849 -178192583 + B4 SINE B4 234 290 -2 4 729 6487 23 1 2 chr1 19004055 19004853 -178190579 - L1Md_T LINE L1 -85 5798 5002 6 91 6475 40 0 0 chr1 19004853 19005625 -178189807 + L1Md_T LINE L1 5809 6580 -2 6 730 356 223 71 41 chr1 19005881 19005979 -178189453 - RMER1B Other Other -367 699 599 7 730 987 284 79 61 chr1 19005984 19006446 -178188986 - RMER1B Other Other -547 795 1 8 730 23 0 0 0 chr1 19006459 19006482 -178188950 + AT_rich Low_complexity Low_complexity 1 23 0 9 730 223 201 43 50 chr1 19006578 19006617 -178188815 + (TATAA)n Simple_repeat Simple_repeat 1 42 0 1 730 2888 159 34 20 chr1 19006617 19007169 -178188263 + RLTR31_Mm LTR ERVK 2 561 0 1 730 223 201 43 50 chr1 19007169 19007270 -178188162 + (TATAA)n Simple_repeat Simple_repeat 3 100 0 1 730 2182 112 19 0 chr1 19007619 19007939 -178187493 - ORR1A2 LTR MaLR 0 327 2 1 730 476 259 34 20 chr1 19007995 19008141 -178187291 - B1F SINE Alu -1 148 1 1 730 418 318 116 25 chr1 19008912 19009023 -178186409 + B4A SINE B4 29 163 -129 1 730 3284 158 110 33 chr1 19009023 19009725 -178185707 + RMER6A LTR ERVK 1 756 0 1 730 418 318 116 25 chr1 19009725 19009855 -178185577 + B4A SINE B4 164 291 -1 1 730 21 0 0 0 chr1 19010358 19010379 -178185053 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 794 324 78 26 chr1 19010464 19010809 -178184623 - MLT2D LTR ERVL -5 409 47 1 730 210 111 0 43 chr1 19011038 19011085 -178184347 + T-rich Low_complexity Low_complexity 4 48 0 1 730 396 0 0 0 chr1 19011098 19011142 -178184290 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 730 368 319 126 42 chr1 19011186 19011448 -178183984 - B4A SINE B4 -6 286 3 2 730 261 0 0 0 chr1 19011859 19011888 -178183544 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 730 7258 51 1 8 chr1 19012907 19013819 -178181613 + L1Md_F2 LINE L1 5676 6581 -1 2 730 3346 38 2 0 chr1 19014246 19014641 -178180791 + MTA_Mm LTR MaLR 1 396 0 2 730 1995 101 45 3 chr1 19015080 19015388 -178180044 + L1_Mus2 LINE L1 6240 6560 -6 2 730 2002 150 39 34 chr1 19015468 19015855 -178179577 - L1_Mus3 LINE L1 0 6638 6250 2 730 1775 85 23 0 chr1 19015857 19016117 -178179315 - L1_Mm LINE L1 -330 5553 5288 2 730 2746 83 0 3 chr1 19016140 19016513 -178178919 - L1_Mus1 LINE L1 -2 6565 6194 2 730 2657 147 0 0 chr1 19016513 19016963 -178178469 - L1_Mm LINE L1 -808 5075 4626 2 730 560 340 6 32 chr1 19017089 19017178 -178178254 + RSINE1 SINE B4 11 100 -65 2 730 511 60 12 23 chr1 19017178 19017264 -178178168 - L1Md_F2 LINE L1 -3 6579 6495 3 730 560 340 6 32 chr1 19017264 19017332 -178178100 + RSINE1 SINE B4 101 164 -1 2 730 24 32 0 0 chr1 19017333 19017364 -178178068 + AT_rich Low_complexity Low_complexity 1 31 0 3 730 449 302 71 11 chr1 19017381 19017565 -178177867 - B3A SINE B2 0 198 4 3 730 1364 51 6 0 chr1 19017672 19017849 -178177583 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 730 850 298 51 4 chr1 19018108 19018384 -178177048 + B4A SINE B4 2 290 -2 3 730 324 0 0 0 chr1 19018507 19018543 -178176889 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 730 486 0 0 0 chr1 19018543 19018596 -178176836 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 730 357 82 0 0 chr1 19018661 19018710 -178176722 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 730 585 223 0 0 chr1 19019396 19019701 -178175731 + (TG)n Simple_repeat Simple_repeat 1 305 0 3 730 450 0 0 0 chr1 19021315 19021365 -178174067 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 730 526 272 46 66 chr1 19021365 19021551 -178173881 - B3A SINE B2 -15 183 1 4 730 21 0 0 0 chr1 19021885 19021906 -178173526 + AT_rich Low_complexity Low_complexity 1 21 0 4 730 319 319 17 17 chr1 19023270 19023388 -178172044 - MER5A1 DNA MER1_type -29 137 20 4 730 702 290 19 10 chr1 19023597 19023806 -178171626 + Lx8 LINE L1 7174 7384 -89 4 730 840 202 68 68 chr1 19023903 19024169 -178171263 - Lx5 LINE L1 0 7050 6785 4 730 609 14 0 0 chr1 19024234 19024304 -178171128 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 4 730 6439 178 3 25 chr1 19024419 19026054 -178169378 - Lx2A LINE L1 -954 6054 4469 4 730 1764 140 29 0 chr1 19026055 19026363 -178169069 + Lx2A LINE L1 6078 6394 -614 4 730 733 212 89 47 chr1 19026363 19026576 -178168856 - RLTR41 LTR ERV1 -224 222 1 4 730 994 174 73 5 chr1 19026923 19027114 -178168318 + RLTR41 LTR ERV1 181 384 -62 4 730 1616 100 0 0 chr1 19027116 19027347 -178168085 + Lx2A LINE L1 6386 6616 -392 4 730 997 302 108 10 chr1 19027864 19028279 -178167153 - MLT1C LTR MaLR -9 458 3 5 730 909 140 0 0 chr1 19028438 19028588 -178166844 + (GGA)n Simple_repeat Simple_repeat 2 151 0 5 730 253 274 21 0 chr1 19028589 19028684 -178166748 + L1MB3 LINE L1 6025 6121 -62 5 730 231 125 0 0 chr1 19028686 19028726 -178166706 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 730 506 321 36 1 chr1 19028746 19028907 -178166525 - B3A SINE B2 -46 170 5 5 730 22 0 0 0 chr1 19028975 19028997 -178166435 + AT_rich Low_complexity Low_complexity 1 22 0 5 730 483 18 0 0 chr1 19029004 19029060 -178166372 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 730 848 170 123 9 chr1 19029354 19029495 -178165937 - Lx7 LINE L1 -4 7692 7548 5 730 311 44 22 0 chr1 19029495 19029540 -178165892 + (TATAA)n Simple_repeat Simple_repeat 2 47 0 5 730 848 170 123 9 chr1 19029540 19029618 -178165814 - Lx7 LINE L1 -149 7547 7448 5 730 374 217 38 38 chr1 19029635 19029793 -178165639 - Lx7 LINE L1 -148 7548 7391 5 730 867 36 0 0 chr1 19029823 19029934 -178165498 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 6 730 182 37 37 0 chr1 19029937 19029964 -178165468 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 730 375 302 0 8 chr1 19030018 19030148 -178165284 - Lx7 LINE L1 -308 7388 7260 5 730 461 313 76 0 chr1 19030751 19030882 -178164550 + RSINE1 SINE B4 16 156 -9 6 730 23 0 0 0 chr1 19031157 19031180 -178164252 + AT_rich Low_complexity Low_complexity 1 23 0 6 730 202 229 0 0 chr1 19031591 19031639 -178163793 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 730 2502 259 48 45 chr1 19033050 19033823 -178161609 + Lx9 LINE L1 6738 7488 -156 6 730 495 107 0 0 chr1 19033823 19033898 -178161534 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 730 2502 259 48 45 chr1 19033898 19034029 -178161403 + Lx9 LINE L1 7489 7643 -1 6 730 1721 286 70 7 chr1 19034238 19034805 -178160627 + Lx9 LINE L1 6360 6962 -682 6 730 1718 256 74 13 chr1 19034823 19035214 -178160218 + MTD LTR MaLR 5 419 0 6 730 1073 239 20 42 chr1 19035214 19035520 -178159912 + Lx9 LINE L1 6976 7274 -370 6 730 213 39 0 0 chr1 19035521 19035547 -178159885 + (A)n Simple_repeat Simple_repeat 1 26 0 6 730 1088 223 10 0 chr1 19035759 19035965 -178159467 + B3 SINE B2 5 212 -4 7 730 1055 277 106 20 chr1 19036140 19036497 -178158935 - MTD LTR MaLR -14 405 18 7 730 1012 260 5 5 chr1 19037773 19037982 -178157450 + B3 SINE B2 7 215 -1 7 730 2114 102 6 63 chr1 19038084 19038418 -178157014 + ORR1A3 LTR MaLR 12 326 0 7 730 228 355 70 35 chr1 19038608 19038751 -178156681 + B1F1 SINE Alu 1 148 -1 7 730 661 244 8 16 chr1 19039022 19039151 -178156281 - B1_Mur1 SINE Alu -20 129 2 7 730 243 0 0 0 chr1 19039353 19039380 -178156052 + (TTA)n Simple_repeat Simple_repeat 1 27 0 7 730 331 369 83 15 chr1 19039534 19039798 -178155634 - L1M5 LINE L1 -2507 3639 3358 7 730 1508 127 19 8 chr1 19039813 19040076 -178155356 + L1VL1 LINE L1 1 266 -6156 7 730 30117 76 9 8 chr1 19040094 19044479 -178150953 + L1Md_F2 LINE L1 1103 5588 -298 7 730 7436 65 22 2 chr1 19044480 19045454 -178149978 + L1Md_F2 LINE L1 5590 6582 -3 7 730 30 27 0 0 chr1 19045888 19045925 -178149507 + AT_rich Low_complexity Low_complexity 1 37 0 8 730 216 136 45 0 chr1 19046048 19046092 -178149340 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 730 571 179 33 107 chr1 19046116 19046266 -178149166 + B1_Mur4 SINE Alu 3 141 -9 8 730 226 333 20 75 chr1 19046312 19046458 -178148974 + MER97c DNA MER1_type? 38 175 -915 8 730 309 275 150 15 chr1 19047954 19048087 -178147345 + HAL1-3A_ME LINE L1 2288 2438 -420 8 730 341 93 0 18 chr1 19048089 19048144 -178147288 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 8 730 199 142 75 0 chr1 19048149 19048255 -178147177 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 8 730 4721 179 25 48 chr1 19048386 19050360 -178145072 - L1_Mur3 LINE L1 -3650 2230 298 8 730 778 191 184 5 chr1 19050605 19050795 -178144637 + URR1B DNA MER1_type 1 224 -1 8 730 6384 101 49 2 chr1 19051438 19052603 -178142829 - L1_Mus4 LINE L1 -3 6633 5415 8 730 2030 139 0 0 chr1 19052598 19052936 -178142496 + L1_Mm LINE L1 4766 5103 -780 9 730 270 338 45 32 chr1 19053558 19053679 -178141753 + B1F1 SINE Alu 1 115 -2 9 730 222 37 0 0 chr1 19053823 19053850 -178141582 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 9 730 180 0 0 0 chr1 19053854 19053874 -178141558 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 9 730 7172 117 28 25 chr1 19053874 19055108 -178140324 - Lx3A LINE L1 -15 6966 5730 9 730 395 369 67 6 chr1 19055225 19055405 -178140027 + B4 SINE B4 2 192 -100 9 730 693 345 14 5 chr1 19055572 19055782 -178139650 + B4A SINE B4 4 215 -77 9 730 211 72 0 45 chr1 19055783 19055827 -178139605 + (TAA)n Simple_repeat Simple_repeat 2 43 0 9 730 896 201 0 0 chr1 19055843 19055987 -178139445 + B1_Mur4 SINE Alu 7 150 0 9 730 1555 135 8 8 chr1 19055991 19056253 -178139179 + Lx LINE L1 6380 6641 -13 9 730 218 211 18 0 chr1 19056253 19056310 -178139122 + A-rich Low_complexity Low_complexity 4 61 0 1 730 180 0 0 0 chr1 19056311 19056331 -178139101 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 730 1561 207 39 3 chr1 19056331 19056641 -178138791 + Lx5 LINE L1 6713 7033 -17 1 730 671 234 21 14 chr1 19056667 19056810 -178138622 + B1_Mur1 SINE Alu 6 149 0 1 730 843 106 0 0 chr1 19056886 19057028 -178138404 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 730 184 30 61 0 chr1 19057103 19057136 -178138296 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 730 396 40 0 0 chr1 19058048 19058098 -178137334 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 730 230 318 102 0 chr1 19058431 19058519 -178136913 - RMER15 LTR ERVL -108 467 371 1 730 234 227 30 15 chr1 19058535 19058602 -178136830 - Lx8 LINE L1 -253 7220 7153 1 730 387 288 6 82 chr1 19058647 19058806 -178136626 - RSINE1 SINE B4 -17 148 2 1 730 309 109 0 18 chr1 19059685 19059741 -178135691 - Lx LINE L1 -61 6593 6539 1 730 194 317 61 0 chr1 19060166 19060248 -178135184 + L2 LINE L2 1600 1686 -1733 1 730 259 203 0 0 chr1 19060574 19060638 -178134794 - Lx5 LINE L1 -1205 5845 5782 1 730 961 273 54 18 chr1 19060651 19061043 -178134389 + Lx6 LINE L1 6465 6883 -577 1 730 35 0 0 0 chr1 19061116 19061151 -178134281 + AT_rich Low_complexity Low_complexity 1 35 0 1 730 442 150 66 11 chr1 19061171 19061289 -178134143 - IAPEY2_LTR LTR ERVK 0 357 211 1 730 630 161 32 8 chr1 19061298 19061423 -178134009 - Lx7 LINE L1 -389 7307 7180 1 730 345 333 24 0 chr1 19061514 19061598 -178133834 + PB1D7 SINE Alu 27 112 -8 1 730 300 211 1 1 chr1 19061780 19061849 -178133583 + L1MA4A LINE L1 5794 5889 -414 1 730 572 256 24 8 chr1 19062058 19062184 -178133248 - ID_B1 SINE B4 -17 207 80 1 730 2285 215 21 8 chr1 19063019 19063488 -178131944 + Lx6 LINE L1 6985 7459 -1 1 730 253 336 25 66 chr1 19064120 19064241 -178131191 + B2_Mm2 SINE B2 10 125 -70 1 730 363 276 55 35 chr1 19065367 19065530 -178129902 - MLT1J LTR MaLR -233 211 50 1 730 356 245 42 99 chr1 19066190 19066403 -178129029 - L1MC2 LINE L1 -284 6060 5860 1 730 503 325 114 10 chr1 19066447 19066649 -178128783 - ID_B1 SINE B4 0 224 2 1 730 414 85 0 0 chr1 19066752 19066811 -178128621 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 730 539 263 36 0 chr1 19066816 19066953 -178128479 - RSINE1 SINE B4 -22 143 2 1 730 407 215 16 0 chr1 19066958 19067079 -178128353 - L1MC2 LINE L1 -899 5392 5270 1 730 255 289 0 0 chr1 19067198 19067250 -178128182 + B1F SINE Alu 7 58 -91 1 730 563 137 13 20 chr1 19067281 19067430 -178128002 + (TAGA)n Simple_repeat Simple_repeat 1 148 0 1 730 222 286 0 0 chr1 19067583 19067632 -178127800 + ID4_ SINE ID 3 51 -32 1 730 29 0 0 0 chr1 19067856 19067885 -178127547 + AT_rich Low_complexity Low_complexity 1 29 0 1 730 699 230 7 7 chr1 19067959 19068099 -178127333 + MTD LTR MaLR 280 419 0 1 730 219 36 0 0 chr1 19068103 19068131 -178127301 + (TTTAA)n Simple_repeat Simple_repeat 4 31 0 1 730 1170 14 0 0 chr1 19068292 19068430 -178127002 + L1Md_A LINE L1 5448 5585 -298 1 730 8432 32 1 1 chr1 19068431 19069426 -178126006 + L1Md_A LINE L1 5587 6581 -1 1 730 185 365 99 12 chr1 19069852 19070013 -178125419 + L2c LINE L2 2980 3154 -233 1 730 2777 76 2 48 chr1 19070747 19071147 -178124285 + L1_Mus2 LINE L1 6185 6566 0 1 730 525 32 0 0 chr1 19071301 19071364 -178124068 + (CTTG)n Simple_repeat Simple_repeat 1 63 0 1 730 573 271 147 31 chr1 19071382 19071641 -178123791 + Lx8 LINE L1 7173 7461 -12 1 730 27 0 0 0 chr1 19071645 19071672 -178123760 + AT_rich Low_complexity Low_complexity 1 27 0 1 730 4531 50 5 0 chr1 19071678 19072284 -178123148 - L1_Mm LINE L1 -2313 3570 2962 1 730 2002 45 0 0 chr1 19072284 19072528 -178122904 + L1Md_F3 LINE L1 6326 6569 -15 1 730 512 291 14 30 chr1 19072534 19072720 -178122712 + B3A SINE B2 5 184 -9 1 730 324 374 10 0 chr1 19072727 19072826 -178122606 + PB1D9 SINE Alu 1 100 -20 1 730 21 36 0 0 chr1 19072958 19072986 -178122446 + AT_rich Low_complexity Low_complexity 1 28 0 1 730 228 277 61 15 chr1 19073080 19073212 -178122220 - Lx7 LINE L1 -25 7671 7534 1 730 416 252 27 13 chr1 19073181 19073330 -178122102 - Lx7 LINE L1 -307 7389 7239 1 730 1566 220 109 41 chr1 19073330 19073670 -178121762 - MTC LTR MaLR 0 421 49 1 730 3212 34 0 0 chr1 19073670 19074052 -178121380 + L1Md_T LINE L1 6201 6582 0 1 730 1566 220 109 41 chr1 19074052 19074105 -178121327 - MTC LTR MaLR -373 48 1 1 730 992 227 137 7 chr1 19074107 19074391 -178121041 - Lx7 LINE L1 -455 7241 6921 1 730 363 44 0 0 chr1 19074403 19074448 -178120984 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 730 261 0 0 0 chr1 19074769 19074798 -178120634 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 730 507 33 0 0 chr1 19075876 19075937 -178119495 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 730 383 319 130 0 chr1 19075949 19076087 -178119345 - B3A SINE B2 -42 156 1 1 730 471 294 117 35 chr1 19076645 19076902 -178118530 + B4A SINE B4 1 278 -14 1 730 200 261 43 0 chr1 19076915 19076984 -178118448 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1 730 24 0 0 0 chr1 19077861 19077885 -178117547 + AT_rich Low_complexity Low_complexity 1 24 0 1 730 189 0 0 0 chr1 19078294 19078315 -178117117 + (T)n Simple_repeat Simple_repeat 1 21 0 1 730 460 346 55 18 chr1 19079147 19079312 -178116120 + B3A SINE B2 2 172 -26 1 730 249 83 0 0 chr1 19079318 19079354 -178116078 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 730 1728 279 51 9 chr1 19079449 19080242 -178115190 - Lx5 LINE L1 -18 7032 6458 1 730 814 289 9 24 chr1 19080380 19080593 -178114839 - B3 SINE B2 -1 215 6 1 730 352 309 144 48 chr1 19080696 19080842 -178114590 - B3 SINE B2 -56 160 1 1 730 285 353 43 43 chr1 19081486 19081625 -178113807 - MER90 LTR ERV1 0 575 437 1 730 637 248 72 14 chr1 19081628 19081767 -178113665 + B1_Mur2 SINE Alu 3 149 0 1 730 535 193 0 27 chr1 19081936 19082048 -178113384 + B3 SINE B2 107 215 -1 1 730 273 279 67 34 chr1 19082094 19082183 -178113249 - PB1D10 SINE Alu -2 115 24 1 730 1826 198 41 51 chr1 19082302 19082695 -178112737 - ORR1B1 LTR MaLR -3 391 3 1 730 217 333 30 0 chr1 19084078 19084144 -178111288 - ID4 SINE ID -14 69 2 1 730 210 37 0 0 chr1 19085085 19085112 -178110320 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 730 213 261 0 0 chr1 19085337 19085452 -178109980 + (CA)n Simple_repeat Simple_repeat 2 116 0 1 730 585 225 4 0 chr1 19085482 19085745 -178109687 + (CA)n Simple_repeat Simple_repeat 1 264 0 1 730 222 268 167 18 chr1 19086590 19086704 -178108728 + MIRb SINE MIR 122 252 -16 1 730 207 0 0 0 chr1 19086997 19087020 -178108412 + (A)n Simple_repeat Simple_repeat 1 23 0 1 730 220 274 16 0 chr1 19087465 19087527 -178107905 + GA-rich Low_complexity Low_complexity 4 66 0 1 730 546 163 0 0 chr1 19087617 19087715 -178107717 + GA-rich Low_complexity Low_complexity 2 99 0 1 730 233 69 0 0 chr1 19087715 19087744 -178107688 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 1 730 939 179 0 0 chr1 19087880 19088059 -178107373 + GA-rich Low_complexity Low_complexity 2 180 0 1 730 200 35 0 65 chr1 19088059 19088090 -178107342 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 1 730 215 125 25 0 chr1 19089053 19089093 -178106339 + (GGAAA)n Simple_repeat Simple_repeat 3 43 0 1 730 21 0 0 0 chr1 19089409 19089430 -178106002 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 206 167 0 57 chr1 19089622 19089692 -178105740 + (TAA)n Simple_repeat Simple_repeat 1 66 0 1 730 234 0 0 0 chr1 19091646 19091672 -178103760 + (A)n Simple_repeat Simple_repeat 1 26 0 1 730 288 0 0 0 chr1 19091905 19091937 -178103495 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 730 459 0 0 0 chr1 19091937 19091987 -178103445 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 730 252 0 0 0 chr1 19092089 19092117 -178103315 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 730 186 43 0 0 chr1 19092261 19092284 -178103148 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 730 212 59 0 29 chr1 19092308 19092343 -178103089 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 730 192 182 0 0 chr1 19093390 19093434 -178101998 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 730 222 118 0 0 chr1 19093431 19093465 -178101967 + (TGG)n Simple_repeat Simple_repeat 3 36 0 1 730 24 0 0 0 chr1 19093899 19093923 -178101509 + AT_rich Low_complexity Low_complexity 1 24 0 1 730 198 128 0 0 chr1 19094122 19094161 -178101271 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 730 432 0 0 0 chr1 19095023 19095071 -178100361 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 730 465 62 0 0 chr1 19095071 19095135 -178100297 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 730 252 340 0 10 chr1 19095705 19095809 -178099623 + GA-rich Low_complexity Low_complexity 2 104 0 1 730 22 35 0 0 chr1 19096810 19096839 -178098593 + AT_rich Low_complexity Low_complexity 1 29 0 1 730 22 35 0 0 chr1 19097726 19097755 -178097677 + AT_rich Low_complexity Low_complexity 1 29 0 1 730 295 78 39 0 chr1 19101527 19101578 -178093854 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1 730 261 0 0 0 chr1 19101886 19101915 -178093517 + (A)n Simple_repeat Simple_repeat 1 29 0 1 730 186 133 0 0 chr1 19102799 19102829 -178092603 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 1 730 318 50 49 16 chr1 19103680 19103741 -178091691 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 730 471 113 0 0 chr1 19104262 19104333 -178091099 + (TTTA)n Simple_repeat Simple_repeat 1 71 0 1 730 222 37 0 0 chr1 19105833 19105860 -178089572 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 730 332 336 30 7 chr1 19106107 19106242 -178089190 - Lx8 LINE L1 -181 7292 7155 1 730 430 290 9 0 chr1 19106998 19107105 -178088327 + B3A SINE B2 40 147 -51 1 730 767 159 68 0 chr1 19107139 19107271 -178088161 + B1_Mus1 SINE Alu 3 143 -5 2 730 30 45 0 0 chr1 19107859 19107903 -178087529 + AT_rich Low_complexity Low_complexity 1 44 0 2 730 3400 69 2 20 chr1 19107948 19108407 -178087025 - L1_Mus1 LINE L1 -2 6565 6115 2 730 288 346 0 10 chr1 19109810 19109912 -178085520 - PB1D7 SINE Alu -14 106 6 2 730 255 297 27 0 chr1 19110435 19110509 -178084923 + B1F SINE Alu 73 148 -1 2 730 360 315 45 9 chr1 19110660 19110772 -178084660 - PB1D7 SINE Alu -4 116 1 2 730 342 115 0 0 chr1 19111266 19111318 -178084114 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2 730 925 149 13 33 chr1 19111339 19111492 -178083940 - B1_Mur4 SINE Alu 0 150 1 2 730 787 271 9 32 chr1 19111652 19111873 -178083559 - B3 SINE B2 0 216 1 2 730 1852 69 0 16 chr1 19112648 19112900 -178082532 + L1Md_F2 LINE L1 6324 6571 -11 2 730 480 35 0 0 chr1 19113407 19113465 -178081967 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 730 340 163 23 0 chr1 19114505 19114591 -178080841 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 730 39400 5 0 0 chr1 19115814 19122355 -178073077 - L1Md_A LINE L1 0 6582 42 2 730 2252 90 14 72 chr1 19122606 19122670 -178072762 - ORR1A2 LTR MaLR 0 327 287 2 730 1133 102 0 0 chr1 19122670 19122817 -178072615 - B1_Mm SINE Alu 0 147 1 2 730 2252 90 14 72 chr1 19122817 19123099 -178072333 - ORR1A2 LTR MaLR -41 286 1 2 730 22 0 0 0 chr1 19123351 19123373 -178072059 + AT_rich Low_complexity Low_complexity 1 22 0 2 730 357 227 0 15 chr1 19123658 19123788 -178071644 - Lx9 LINE L1 0 7644 7517 2 730 225 241 0 0 chr1 19123788 19123842 -178071590 + Lx9 LINE L1 7424 7477 -167 2 730 411 359 102 37 chr1 19123851 19124175 -178071257 - L1MC LINE L1 -2102 5780 5436 2 730 466 307 26 15 chr1 19124586 19124781 -178070651 - L1M5 LINE L1 -1073 5073 4877 2 730 1049 119 136 3 chr1 19125073 19125266 -178070166 - B2_Mm2 SINE B2 0 216 2 2 730 427 289 16 8 chr1 19125921 19126043 -178069389 + B1F SINE Alu 20 142 -7 2 730 254 307 0 0 chr1 19126056 19126131 -178069301 + ID4_ SINE ID 2 76 -7 2 730 564 292 29 72 chr1 19126535 19126742 -178068690 + B3A SINE B2 1 198 0 2 730 524 256 14 90 chr1 19127841 19128064 -178067368 - CYRA11_Mm Unknown Y-chromosome -192 425 220 2 730 1054 147 115 0 chr1 19127896 19128087 -178067345 + URR1B DNA MER1_type 5 217 -8 2 730 199 53 88 50 chr1 19128656 19128736 -178066696 + (TTAAA)n Simple_repeat Simple_repeat 4 86 0 2 730 541 294 15 60 chr1 19129282 19129481 -178065951 - B3A SINE B2 -2 196 7 2 730 229 125 0 82 chr1 19129841 19129902 -178065530 + L1ME2z LINE L1 6362 6417 -27 2 730 948 159 12 12 chr1 19129953 19130125 -178065307 + B2_Mm2 SINE B2 2 173 -22 2 730 213 39 0 0 chr1 19130128 19130154 -178065278 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2 730 1093 129 12 0 chr1 19130168 19130339 -178065093 - Lx LINE L1 -395 6259 6087 2 730 1885 113 6 16 chr1 19130336 19130659 -178064773 + Lx LINE L1 6283 6602 -52 2 730 356 302 77 39 chr1 19131400 19131555 -178063877 - RSINE1 SINE B4 -2 163 3 2 730 283 175 18 0 chr1 19131558 19131615 -178063817 - ID_B1 SINE B4 -3 221 164 2 730 557 191 0 31 chr1 19131725 19131822 -178063610 + B3 SINE B2 11 104 -112 2 730 234 160 0 0 chr1 19132535 19132585 -178062847 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 730 341 380 61 15 chr1 19133287 19133418 -178062014 + RSINE1 SINE B4 12 148 -17 2 730 297 0 0 0 chr1 19133424 19133457 -178061975 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 730 207 0 0 0 chr1 19133458 19133481 -178061951 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 730 1469 238 75 3 chr1 19134836 19135211 -178060221 - Lx6 LINE L1 -243 7217 6816 2 730 3557 241 61 17 chr1 19135227 19136275 -178059157 - Lx6 LINE L1 -740 6720 5656 2 730 555 297 39 6 chr1 19136285 19136441 -178058991 - RSINE1 SINE B4 -2 163 3 2 731 476 339 79 53 chr1 19136758 19137060 -178058372 + B4 SINE B4 2 292 0 2 731 305 109 18 0 chr1 19137077 19137132 -178058300 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 731 405 0 0 0 chr1 19137132 19137176 -178058256 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 731 1117 86 0 18 chr1 19137391 19137628 -178057804 + L1_Mus1 LINE L1 6400 6567 0 2 731 198 0 0 0 chr1 19137628 19137650 -178057782 + (GGAAA)n Simple_repeat Simple_repeat 5 26 0 2 731 1371 22 0 32 chr1 19137650 19137836 -178057596 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 731 582 41 0 0 chr1 19137849 19137922 -178057510 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 731 571 316 127 36 chr1 19138621 19138833 -178056599 - MLT1A0 LTR MaLR -1 364 144 2 731 2263 66 7 3 chr1 19138833 19139136 -178056296 + L1_Mus2 LINE L1 6263 6566 0 2 731 571 316 127 36 chr1 19139136 19139197 -178056235 - MLT1A0 LTR MaLR -222 143 74 2 731 510 17 0 0 chr1 19139197 19139256 -178056176 + (TATTG)n Simple_repeat Simple_repeat 1 59 0 2 731 571 316 127 36 chr1 19139256 19139313 -178056119 - MLT1A0 LTR MaLR -292 73 5 2 731 1288 100 10 16 chr1 19139630 19139653 -178055779 - B2_Mm2 SINE B2 -2 193 170 2 731 2132 96 9 13 chr1 19139653 19139971 -178055461 - L1Md_F2 LINE L1 0 6582 6266 2 731 1288 100 10 16 chr1 19139971 19140140 -178055292 - B2_Mm2 SINE B2 -26 169 2 2 731 276 231 17 92 chr1 19140432 19140551 -178054881 + PB1D10 SINE Alu 1 110 -7 2 731 642 184 101 15 chr1 19140716 19140915 -178054517 - Lx7 LINE L1 0 7696 7481 2 731 1231 89 2 18 chr1 19141025 19141247 -178054185 - L1Md_F2 LINE L1 -127 6439 6220 2 731 252 0 0 0 chr1 19141537 19141565 -178053867 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 731 271 282 53 78 chr1 19141567 19141772 -178053660 - B4 SINE B4 0 292 2 2 731 818 145 87 0 chr1 19141909 19142047 -178053385 + B1_Mur4 SINE Alu 1 150 0 2 731 486 284 123 15 chr1 19142479 19142812 -178052620 - L1MB2 LINE L1 -27 6144 5776 2 731 22 0 0 0 chr1 19142878 19142900 -178052532 + AT_rich Low_complexity Low_complexity 1 22 0 2 731 209 196 0 0 chr1 19143038 19143084 -178052348 + A-rich Low_complexity Low_complexity 2 47 0 2 731 365 170 0 11 chr1 19143406 19143495 -178051937 + CT-rich Low_complexity Low_complexity 2 89 0 2 731 627 266 60 22 chr1 19144300 19144670 -178050762 - L1M4 LINE L1 -832 5311 4936 2 731 607 282 70 0 chr1 19145127 19145269 -178050163 - RSINE1 SINE B4 -8 157 6 2 731 874 331 41 13 chr1 19146872 19147190 -178048242 - MER31A LTR ERV1 -80 405 79 2 731 243 79 0 0 chr1 19147191 19147229 -178048203 + (T)n Simple_repeat Simple_repeat 1 38 0 2 731 578 347 125 12 chr1 19147321 19147569 -178047863 + B4A SINE B4 1 276 -16 2 731 4125 4 0 0 chr1 19148173 19148628 -178046804 + L1Md_A LINE L1 6128 6582 0 2 731 210 347 69 46 chr1 19149361 19149491 -178045941 + MER5A DNA MER1_type 49 181 -8 2 731 1946 210 23 28 chr1 19151052 19151448 -178043984 - MTD LTR MaLR -14 405 12 2 731 298 74 37 0 chr1 19151689 19151743 -178043689 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 731 559 273 0 59 chr1 19151754 19151906 -178043526 + ID_B1 SINE B4 82 224 0 2 731 1032 156 5 25 chr1 19151931 19152128 -178043304 - B2_Mm2 SINE B2 -2 193 1 2 731 479 232 30 10 chr1 19152177 19152277 -178043155 + PB1D9 SINE Alu 11 112 -8 2 731 27 0 0 0 chr1 19152277 19152304 -178043128 + AT_rich Low_complexity Low_complexity 1 27 0 2 731 221 254 16 0 chr1 19152364 19152427 -178043005 + (ATTG)n Simple_repeat Simple_repeat 3 66 0 2 731 297 298 71 39 chr1 19153518 19153773 -178041659 - L1ME1 LINE L1 -130 6049 5787 2 731 1126 188 43 5 chr1 19153958 19154166 -178041266 + B3 SINE B2 1 216 0 2 731 229 228 17 17 chr1 19154641 19154699 -178040733 + CYRA11_Mm Unknown Y-chromosome 262 319 -298 2 731 266 227 0 13 chr1 19155026 19155102 -178040330 + A-rich Low_complexity Low_complexity 3 77 0 2 731 1078 113 17 0 chr1 19155114 19155291 -178040141 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 731 1129 11 0 82 chr1 19155298 19155493 -178039939 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 2 731 212 259 24 24 chr1 19156382 19156465 -178038967 + A-rich Low_complexity Low_complexity 3 85 0 2 731 1710 117 41 8 chr1 19159479 19159747 -178035685 - L1Md_F2 LINE L1 -1 6581 6305 2 731 1108 34 74 0 chr1 19159747 19159895 -178035537 + L1Md_F2 LINE L1 6132 6290 -292 2 731 329 328 53 30 chr1 19160004 19160136 -178035296 + MIRm SINE MIR 3 137 -139 2 731 4648 192 62 21 chr1 19160136 19161239 -178034193 - ORR1A2-int LTR MaLR -867 1096 1 2 731 2299 102 9 58 chr1 19161239 19161583 -178033849 - ORR1A2 LTR MaLR 0 327 1 2 731 803 154 39 0 chr1 19161583 19161739 -178033693 + Lx7 LINE L1 5668 5829 -51 2 731 7444 57 9 1 chr1 19161744 19162808 -178032624 + L1_Mus1 LINE L1 5489 6561 -6 2 731 2137 209 83 25 chr1 19162821 19163385 -178032047 + Lx7 LINE L1 5823 6419 -1277 2 731 655 325 37 28 chr1 19163436 19163864 -178031568 - SRV_MM-int LTR ERVK -3889 2278 1847 2 731 3349 43 2 0 chr1 19164123 19164518 -178030914 - MTA_Mm LTR MaLR 0 396 1 2 731 1225 31 0 0 chr1 19164518 19164681 -178030751 - MTA_Mm-int LTR MaLR 0 1098 936 2 731 905 101 21 7 chr1 19164665 19164805 -178030627 - MTA_Mm-int LTR MaLR -956 142 1 2 731 189 0 0 0 chr1 19164939 19164960 -178030472 + (A)n Simple_repeat Simple_repeat 1 21 0 2 731 624 256 60 0 chr1 19165030 19165163 -178030269 + B1_Mur3 SINE Alu 3 143 -6 2 731 227 288 123 56 chr1 19165269 19165421 -178030011 - ORR1A3-int LTR MaLR -835 1128 970 2 731 1518 67 5 0 chr1 19165421 19165629 -178029803 + L1Md_F2 LINE L1 6374 6582 0 2 731 227 288 123 56 chr1 19165629 19165671 -178029761 - ORR1A3-int LTR MaLR -994 969 921 2 731 238 35 0 0 chr1 19165666 19165695 -178029737 + B2_Mm2 SINE B2 40 68 -127 2 731 462 250 19 9 chr1 19165734 19165839 -178029593 + B3 SINE B2 58 163 -53 2 731 594 0 0 0 chr1 19166357 19166423 -178029009 + (CCCTAA)n Simple_repeat Simple_repeat 6 71 0 2 731 24 32 0 0 chr1 19166553 19166584 -178028848 + AT_rich Low_complexity Low_complexity 1 31 0 2 731 1606 47 0 0 chr1 19166698 19166890 -178028542 + B2_Mm1t SINE B2 1 192 -1 2 731 778 174 0 0 chr1 19167858 19167973 -178027459 - PB1D9 SINE Alu -1 119 5 2 731 718 239 191 16 chr1 19168924 19169107 -178026325 + B3 SINE B2 2 216 0 3 731 474 18 0 0 chr1 19169427 19169482 -178025950 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 731 338 146 0 12 chr1 19169482 19169565 -178025867 + GA-rich Low_complexity Low_complexity 2 83 0 3 731 565 313 54 0 chr1 19169568 19169715 -178025717 - B3A SINE B2 -35 163 9 3 731 202 217 0 21 chr1 19169786 19169833 -178025599 + GA-rich Low_complexity Low_complexity 4 49 0 3 731 1967 139 52 12 chr1 19170395 19170738 -178024694 + ORR1B2 LTR MaLR 1 357 -10 3 731 413 247 79 18 chr1 19171137 19171302 -178024130 - L1MA4A LINE L1 -371 5932 5758 3 731 234 236 0 0 chr1 19171633 19171688 -178023744 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 3 731 274 155 0 53 chr1 19171689 19171764 -178023668 + CT-rich Low_complexity Low_complexity 2 72 0 3 731 338 215 20 88 chr1 19171773 19171875 -178023557 + MTD LTR MaLR 1 95 -324 3 731 270 0 0 0 chr1 19171974 19172004 -178023428 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 3 731 386 171 13 26 chr1 19172023 19172101 -178023331 - B1_Mur4 SINE Alu 0 150 74 3 731 858 271 47 44 chr1 19172630 19172970 -178022462 + L1M1 LINE L1 5440 5780 -523 3 731 360 138 0 0 chr1 19172970 19173035 -178022397 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 731 2196 147 3 21 chr1 19173040 19173101 -178022331 - ORR1A2 LTR MaLR 0 327 270 3 731 1122 89 0 33 chr1 19173101 19173252 -178022180 - B1_Mus1 SINE Alu -1 147 2 3 731 2196 147 3 21 chr1 19173252 19173523 -178021909 - ORR1A2 LTR MaLR -58 269 1 3 731 387 0 0 0 chr1 19173525 19173568 -178021864 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3 731 180 0 0 0 chr1 19173570 19173590 -178021842 + (CATA)n Simple_repeat Simple_repeat 3 22 0 3 731 3718 15 5 0 chr1 19173652 19174046 -178021386 - MTA_Mm LTR MaLR 0 396 1 3 731 8910 62 9 4 chr1 19174046 19175138 -178020294 - MTA_Mm-int LTR MaLR 0 1098 1 3 731 3669 23 5 0 chr1 19175138 19175532 -178019900 - MTA_Mm LTR MaLR 0 396 1 3 731 26 0 0 0 chr1 19175585 19175611 -178019821 + AT_rich Low_complexity Low_complexity 1 26 0 3 731 615 117 0 0 chr1 19175884 19175978 -178019454 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 3 731 630 312 17 11 chr1 19175980 19176155 -178019277 + B3A SINE B2 5 180 -18 3 731 26 30 0 0 chr1 19176176 19176209 -178019223 + AT_rich Low_complexity Low_complexity 1 33 0 3 731 270 335 159 73 chr1 19176854 19177099 -178018333 - MLT1J LTR MaLR -31 481 216 3 731 30486 103 21 7 chr1 19177365 19179029 -178016403 - L1_Mus2 LINE L1 -621 5945 4229 3 731 1934 67 11 30 chr1 19179029 19179291 -178016141 - L1_Mus1 LINE L1 -1 6566 6310 3 731 30486 134 30 46 chr1 19179291 19183185 -178012247 - L1_Mus2 LINE L1 -1655 4228 440 3 731 233 227 0 0 chr1 19183362 19183406 -178012026 - ID4_ SINE ID -39 44 1 3 731 552 314 67 17 chr1 19183883 19184061 -178011371 - B3A SINE B2 -10 188 2 3 731 942 209 126 10 chr1 19184323 19184521 -178010911 + URR1B DNA MER1_type 5 225 0 3 731 261 362 85 7 chr1 19184592 19184745 -178010687 - MER20 DNA MER1_type -1 218 54 3 731 850 169 210 17 chr1 19185002 19185183 -178010249 - B3 SINE B2 0 216 1 3 731 5773 121 14 8 chr1 19185458 19186284 -178009148 + Lx2 LINE L1 6166 6996 -1 3 731 243 0 0 0 chr1 19186367 19186394 -178009038 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 731 672 191 197 78 chr1 19186691 19186722 -178008710 + B3 SINE B2 1 31 -185 3 731 1561 28 0 0 chr1 19186722 19186901 -178008531 + L1Md_F2 LINE L1 6404 6582 0 3 731 672 200 170 90 chr1 19186901 19187092 -178008340 + B3 SINE B2 32 216 0 3 731 237 255 26 148 chr1 19187095 19187210 -178008222 + MLT1J LTR MaLR 205 305 -207 3 731 403 339 9 0 chr1 19187383 19187408 -178008024 + ID SINE ID 56 81 -143 3 731 308 336 0 72 chr1 19187408 19187533 -178007899 + PB1D10 SINE Alu 1 116 -1 3 731 380 329 66 47 chr1 19187536 19187778 -178007654 + Lx8 LINE L1 7130 7504 -140 3 731 537 30 0 0 chr1 19187778 19187845 -178007587 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 731 339 329 66 47 chr1 19187845 19187965 -178007467 + Lx8 LINE L1 7505 7622 -22 3 731 837 293 63 55 chr1 19188235 19188582 -178006850 - ORR1E LTR MaLR -4 355 6 3 731 26 0 0 0 chr1 19188801 19188827 -178006605 + AT_rich Low_complexity Low_complexity 1 26 0 3 731 473 290 117 33 chr1 19189123 19189337 -178006095 + B4A SINE B4 6 237 -55 3 731 303 49 0 0 chr1 19189391 19189432 -178006000 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 731 25 31 0 0 chr1 19190320 19190352 -178005080 + AT_rich Low_complexity Low_complexity 1 32 0 3 731 781 243 13 100 chr1 19190404 19190633 -178004799 - ORR1B2 LTR MaLR 0 367 159 3 731 1178 119 17 0 chr1 19190638 19190814 -178004618 + B2_Mm2 SINE B2 1 179 -16 3 731 695 225 54 36 chr1 19190816 19190982 -178004450 - ORR1B2 LTR MaLR -198 169 1 3 731 26 64 0 0 chr1 19191778 19191825 -178003607 + AT_rich Low_complexity Low_complexity 1 47 0 3 731 2197 210 188 27 chr1 19192113 19192825 -178002607 - Lx7 LINE L1 -1426 6270 5434 3 731 610 221 286 35 chr1 19193047 19193394 -178002038 + Lx7 LINE L1 7260 7692 -4 3 731 21 0 0 0 chr1 19194032 19194053 -178001379 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 632 229 45 15 chr1 19194755 19194888 -178000544 - B1_Mur2 SINE Alu -12 137 1 3 731 216 0 0 0 chr1 19194889 19194913 -178000519 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 3 731 1013 98 29 0 chr1 19194913 19195086 -178000346 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 731 198 188 37 12 chr1 19195090 19195171 -178000261 + CT-rich Low_complexity Low_complexity 4 86 0 3 731 207 182 0 0 chr1 19196389 19196422 -177999010 + A-rich Low_complexity Low_complexity 2 34 0 3 731 318 26 0 0 chr1 19196609 19196648 -177998784 + (TATG)n Simple_repeat Simple_repeat 1 39 0 3 731 27 49 0 0 chr1 19196749 19196790 -177998642 + AT_rich Low_complexity Low_complexity 1 41 0 3 731 285 228 40 13 chr1 19197341 19197492 -177997940 + GA-rich Low_complexity Low_complexity 2 156 0 3 731 537 165 0 0 chr1 19198955 19199052 -177996380 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 731 23 33 0 0 chr1 19199725 19199755 -177995677 + AT_rich Low_complexity Low_complexity 1 30 0 3 731 207 0 0 0 chr1 19200253 19200276 -177995156 + (A)n Simple_repeat Simple_repeat 1 23 0 3 731 556 38 25 0 chr1 19200676 19200755 -177994677 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 731 301 267 49 49 chr1 19201121 19201243 -177994189 + HAL1-3A_ME LINE L1 2666 2787 -71 3 731 277 72 35 18 chr1 19201564 19201621 -177993811 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 3 731 495 0 0 0 chr1 19202569 19202624 -177992808 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 731 456 19 0 0 chr1 19202624 19202676 -177992756 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 731 483 81 50 10 chr1 19203677 19203720 -177991712 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 731 979 142 11 0 chr1 19203720 19203896 -177991536 + CT-rich Low_complexity Low_complexity 1 178 0 3 731 483 81 50 10 chr1 19203896 19203952 -177991480 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 731 250 172 17 33 chr1 19203959 19204019 -177991413 + CT-rich Low_complexity Low_complexity 5 63 0 3 731 642 26 0 0 chr1 19205642 19205718 -177989714 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 731 522 31 0 0 chr1 19207316 19207380 -177988052 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 731 360 0 0 0 chr1 19207788 19207828 -177987604 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 731 353 39 20 0 chr1 19208531 19208582 -177986850 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 731 195 69 0 0 chr1 19209747 19209776 -177985656 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 731 24 0 0 0 chr1 19209853 19209877 -177985555 + AT_rich Low_complexity Low_complexity 1 24 0 3 731 353 22 0 21 chr1 19212456 19212503 -177982929 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 731 446 94 0 23 chr1 19212779 19212866 -177982566 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 3 731 234 275 84 36 chr1 19212973 19213056 -177982376 - MIRm SINE MIR -156 120 34 3 731 429 20 0 0 chr1 19213608 19213658 -177981774 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 731 242 29 0 28 chr1 19216375 19216411 -177979021 + (GGGTG)n Simple_repeat Simple_repeat 2 36 0 3 731 438 20 0 0 chr1 19216766 19216817 -177978615 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 731 774 199 0 15 chr1 19217780 19217913 -177977519 - B1_Mus1 SINE Alu -6 142 12 3 731 318 289 46 37 chr1 19219023 19219131 -177976301 + RSINE1 SINE B4 24 132 -33 3 731 1439 91 11 26 chr1 19219820 19220011 -177975421 - B2_Mm2 SINE B2 -6 189 2 3 731 720 64 0 0 chr1 19220037 19220131 -177975301 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 731 207 69 0 0 chr1 19222135 19222164 -177973268 + (T)n Simple_repeat Simple_repeat 1 29 0 3 731 423 0 0 0 chr1 19222448 19222495 -177972937 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 731 207 0 0 0 chr1 19222495 19222517 -177972915 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 731 759 11 0 0 chr1 19223587 19223675 -177971757 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 731 531 31 0 0 chr1 19223675 19223739 -177971693 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 731 28 29 0 0 chr1 19224848 19224883 -177970549 + AT_rich Low_complexity Low_complexity 1 35 0 3 731 206 128 26 0 chr1 19225066 19225105 -177970327 + C-rich Low_complexity Low_complexity 3 42 0 3 731 203 156 0 0 chr1 19225334 19225366 -177970066 + A-rich Low_complexity Low_complexity 2 33 0 3 731 396 0 0 0 chr1 19225943 19225987 -177969445 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 731 224 157 20 0 chr1 19228202 19228253 -177967179 + A-rich Low_complexity Low_complexity 2 53 0 3 731 1082 59 0 7 chr1 19229258 19229394 -177966038 + B1_Mus2 SINE Alu 1 135 -12 3 731 1111 14 21 14 chr1 19231796 19231940 -177963492 + (TTTCC)n Simple_repeat Simple_repeat 5 149 0 3 731 248 0 31 0 chr1 19233207 19233239 -177962193 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 731 652 12 24 0 chr1 19233269 19233354 -177962078 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 4 731 441 149 119 69 chr1 19233354 19233445 -177961987 - B1_Mus2 SINE Alu -9 140 44 4 731 273 197 72 84 chr1 19233384 19233467 -177961965 - RLTR25B LTR ERVK -519 509 428 4 731 447 249 294 0 chr1 19236876 19237168 -177958264 - MTE2b LTR MaLR 0 379 2 4 731 596 202 29 157 chr1 19237219 19237430 -177958002 - B3 SINE B2 -5 190 1 4 731 864 202 39 6 chr1 19237684 19237863 -177957569 + B2_Mm2 SINE B2 9 193 -2 4 731 249 148 12 24 chr1 19238235 19238318 -177957114 + (CAAA)n Simple_repeat Simple_repeat 3 84 0 4 731 214 319 179 11 chr1 19238472 19238567 -177956865 - MER5B DNA MER1_type -39 139 29 4 731 250 301 12 12 chr1 19238877 19238961 -177956471 + CT-rich Low_complexity Low_complexity 2 85 0 4 731 505 220 129 0 chr1 19238986 19239118 -177956314 - B1_Mur4 SINE Alu -1 149 1 4 731 550 270 39 23 chr1 19239279 19239408 -177956024 - B1_Mur2 SINE Alu -15 134 4 4 731 228 245 58 83 chr1 19239860 19239980 -177955452 - RLTR25B LTR ERVK -470 558 442 4 731 761 191 14 0 chr1 19239875 19240016 -177955416 - B1_Mur4 SINE Alu -2 148 6 4 731 274 255 8 138 chr1 19239908 19240031 -177955401 - MT2B LTR ERVL -337 264 158 4 731 511 362 26 37 chr1 19240180 19240561 -177954871 - MamRep434 DNA TcMar -48 378 2 4 731 1231 99 28 6 chr1 19242061 19242243 -177953189 - B2_Mm2 SINE B2 -9 186 1 4 731 512 238 79 7 chr1 19242430 19242582 -177952850 - RSINE1 SINE B4 0 165 3 4 731 231 235 10 20 chr1 19242969 19243069 -177952363 + CT-rich Low_complexity Low_complexity 3 101 0 4 731 591 53 0 0 chr1 19243069 19243144 -177952288 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 4 731 489 99 0 0 chr1 19243145 19243226 -177952206 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 731 285 277 187 21 chr1 19243245 19243355 -177952077 - B1_Mur1 SINE Alu -13 136 6 4 731 259 216 0 39 chr1 19243424 19243501 -177951931 + GA-rich Low_complexity Low_complexity 2 75 0 4 731 505 330 69 30 chr1 19243840 19244035 -177951397 + ID_B1 SINE B4 8 211 -13 4 731 739 46 0 18 chr1 19244035 19244145 -177951287 + (CAAAA)n Simple_repeat Simple_repeat 1 108 0 4 731 505 282 5 168 chr1 19244240 19244436 -177950996 + B3 SINE B2 1 164 -52 4 731 318 26 0 0 chr1 19244437 19244476 -177950956 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 731 267 295 25 59 chr1 19244946 19245065 -177950367 + MIR SINE MIR 92 206 -56 4 731 665 264 0 0 chr1 19245158 19245302 -177950130 + B1_Mur1 SINE Alu 1 144 -5 4 731 582 271 115 6 chr1 19245720 19245902 -177949530 + B3 SINE B2 1 202 -14 4 731 181 53 51 26 chr1 19246352 19246391 -177949041 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 731 513 0 0 0 chr1 19246713 19246770 -177948662 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 731 490 254 8 60 chr1 19246770 19246887 -177948545 - B1_Mur1 SINE Alu -38 111 1 4 731 332 275 96 52 chr1 19246927 19247199 -177948233 + L1MC4 LINE L1 6968 7251 -791 4 731 265 326 23 15 chr1 19247285 19247416 -177948016 + L1MC4 LINE L1 7483 7614 -428 4 731 646 182 168 0 chr1 19247453 19247596 -177947836 - MTC LTR MaLR -239 182 16 4 731 32 0 0 0 chr1 19247623 19247655 -177947777 + AT_rich Low_complexity Low_complexity 1 32 0 4 731 502 163 87 0 chr1 19247740 19247832 -177947600 - MTC LTR MaLR -306 115 16 4 731 32 0 0 0 chr1 19247859 19247891 -177947541 + AT_rich Low_complexity Low_complexity 1 32 0 4 731 651 240 0 8 chr1 19247929 19248055 -177947377 + B1_Mur3 SINE Alu 3 127 -22 4 731 357 153 0 0 chr1 19248055 19248127 -177947305 + (CCAA)n Simple_repeat Simple_repeat 4 75 0 4 731 185 83 28 0 chr1 19248126 19248162 -177947270 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 731 438 20 0 0 chr1 19248465 19248516 -177946916 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 731 5452 140 72 15 chr1 19248527 19249477 -177945955 - Lx3B LINE L1 -4 6969 5966 4 731 268 333 0 0 chr1 19250575 19250650 -177944782 + ID4_ SINE ID 2 76 -7 4 731 322 220 17 0 chr1 19250698 19250757 -177944675 + B1_Mur4 SINE Alu 1 60 -90 4 731 186 133 0 0 chr1 19250765 19250795 -177944637 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 4 731 419 234 6 0 chr1 19250790 19250961 -177944471 + GA-rich Low_complexity Low_complexity 2 173 0 4 731 527 191 0 28 chr1 19250994 19251102 -177944330 + B1_Mus2 SINE Alu 42 146 -1 4 731 240 125 0 53 chr1 19251102 19251178 -177944254 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 4 731 1218 102 29 39 chr1 19251179 19251383 -177944049 + L1_Mus1 LINE L1 6364 6565 -2 4 731 253 277 0 0 chr1 19251387 19251470 -177943962 + A-rich Low_complexity Low_complexity 1 83 0 4 731 4225 64 13 2 chr1 19252162 19252709 -177942723 + L1_Mus1 LINE L1 6015 6567 0 4 731 4385 104 30 3 chr1 19254718 19255343 -177940089 - Lx2 LINE L1 -1 6996 6355 4 731 750 267 60 20 chr1 19255799 19255998 -177939434 - B3 SINE B2 -4 212 6 4 731 378 361 17 40 chr1 19256121 19256297 -177939135 + B3A SINE B2 12 183 -15 4 731 23 0 0 0 chr1 19256361 19256384 -177939048 + AT_rich Low_complexity Low_complexity 1 23 0 4 731 200 296 47 58 chr1 19256829 19256915 -177938517 + MIR3 SINE MIR 99 183 -25 4 731 22 35 0 0 chr1 19256951 19256980 -177938452 + AT_rich Low_complexity Low_complexity 1 29 0 4 731 298 336 15 22 chr1 19259997 19260134 -177935298 - LTR16E2 LTR ERVL -2 566 431 4 731 195 42 0 0 chr1 19260427 19260451 -177934981 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 731 976 103 6 6 chr1 19260756 19260913 -177934519 + (TTTC)n Simple_repeat Simple_repeat 1 157 0 4 731 999 157 117 0 chr1 19261067 19261264 -177934168 + URR1A DNA MER1_type 1 220 -6 4 731 27146 119 17 26 chr1 19261550 19266776 -177928656 + L1Md_F LINE L1 591 5787 -96 4 731 2888 31 6 8 chr1 19266776 19267132 -177928300 + L1Md_F3 LINE L1 6230 6584 0 4 91 5514 95 18 1 chr1 19267128 19267899 -177927533 + L1_Mus2 LINE L1 5783 6566 0 4 732 206 81 27 0 chr1 19267914 19267951 -177927481 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 4 732 183 42 0 0 chr1 19267961 19267985 -177927447 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 732 444 104 0 0 chr1 19268254 19268321 -177927111 + (TTA)n Simple_repeat Simple_repeat 1 67 0 4 732 766 275 55 0 chr1 19268335 19268517 -177926915 - B3 SINE B2 -6 210 19 4 732 192 152 0 0 chr1 19268706 19268739 -177926693 + T-rich Low_complexity Low_complexity 1 33 0 4 732 980 70 0 0 chr1 19269101 19269229 -177926203 - L1_Mus2 LINE L1 0 6566 6439 4 732 387 31 125 0 chr1 19269230 19269294 -177926138 + L1_Mus2 LINE L1 6067 6138 -428 4 732 314 333 124 60 chr1 19269450 19269836 -177925596 + L2c LINE L2 2965 3375 -12 4 732 296 294 179 22 chr1 19271104 19271288 -177924144 + MER2 DNA MER2_type 1 213 -132 4 732 1273 263 80 19 chr1 19271309 19271724 -177923708 + BGLII_B LTR ERVK 1 440 -1 4 732 2840 23 4 181 chr1 19273311 19273785 -177921647 + RLTR10 LTR ERVK 1 390 0 4 732 3715 38 32 2 chr1 19273795 19274651 -177920781 + RLTR10-int LTR ERVK 41 998 -989 4 732 289 252 38 28 chr1 19274739 19274845 -177920587 + RLTR10-int LTR ERVK 1488 1594 -5987 4 732 8392 15 1 2 chr1 19274928 19275922 -177919510 + RLTR10-int LTR ERVK 992 1984 -3 4 732 2840 23 4 181 chr1 19275924 19276398 -177919034 + RLTR10 LTR ERVK 1 390 0 4 732 652 260 85 25 chr1 19276991 19277192 -177918240 - B3 SINE B2 0 216 4 4 732 690 35 0 0 chr1 19278218 19278303 -177917129 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 732 211 114 45 0 chr1 19278976 19279020 -177916412 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 732 3669 137 19 2 chr1 19279728 19280313 -177915119 + Lx2 LINE L1 6401 6995 -2 4 732 849 243 6 0 chr1 19280342 19280511 -177914921 - B3A SINE B2 -23 175 6 4 732 534 104 0 0 chr1 19281071 19281167 -177914265 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 732 21 36 0 0 chr1 19283629 19283657 -177911775 + AT_rich Low_complexity Low_complexity 1 28 0 4 732 887 109 0 7 chr1 19283752 19283891 -177911541 + (TCCC)n Simple_repeat Simple_repeat 4 141 0 4 732 504 0 0 0 chr1 19283897 19283953 -177911479 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 4 732 353 102 17 0 chr1 19284484 19284543 -177910889 - Lx2B LINE L1 -12 6988 6929 4 732 290 273 0 0 chr1 19285080 19285157 -177910275 - B4A SINE B4 0 292 216 4 732 3437 153 47 18 chr1 19285172 19285770 -177909662 - Lx2 LINE L1 -6 6991 6377 4 732 527 296 14 21 chr1 19285774 19285919 -177909513 - B4A SINE B4 -148 144 1 4 732 513 0 0 0 chr1 19286313 19286370 -177909062 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 732 552 295 45 53 chr1 19286382 19286719 -177908713 - L1MA4A LINE L1 -368 5935 5602 4 732 642 126 0 0 chr1 19287222 19287325 -177908107 + (TA)n Simple_repeat Simple_repeat 2 104 0 4 732 943 57 0 0 chr1 19287531 19287653 -177907779 - B1_Mm SINE Alu -1 146 25 4 732 2546 119 10 3 chr1 19288777 19289164 -177906268 - L1_Mus3 LINE L1 -2 6636 6247 4 732 268 284 40 26 chr1 19289280 19289432 -177906000 - L1MA4A LINE L1 -1198 4945 4792 4 732 660 281 39 53 chr1 19289502 19289991 -177905441 - L1M4 LINE L1 -1488 4658 4177 4 732 214 298 73 110 chr1 19290003 19290139 -177905293 - B1F1 SINE Alu -2 147 17 4 732 564 271 32 112 chr1 19290139 19290513 -177904919 + L1VL1 LINE L1 4 355 -6067 4 732 353 262 57 8 chr1 19290689 19290812 -177904620 + L1VL2 LINE L1 675 803 -5813 4 732 10050 142 13 24 chr1 19290821 19293112 -177902320 + L1VL2 LINE L1 726 2982 -2901 4 732 341 314 48 76 chr1 19293144 19293354 -177902078 - MER105 DNA DNA 0 204 1 4 732 237 322 204 16 chr1 19293354 19293514 -177901918 + MLT1J2 LTR MaLR 254 448 0 4 732 596 321 42 0 chr1 19294530 19294720 -177900712 + B3A SINE B2 1 198 0 4 732 4755 150 40 21 chr1 19294727 19295553 -177899879 + Lx3C LINE L1 6128 6969 -7 5 732 189 0 0 0 chr1 19295569 19295590 -177899842 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 5 732 24 32 0 0 chr1 19295800 19295831 -177899601 + AT_rich Low_complexity Low_complexity 1 31 0 5 732 17488 116 10 20 chr1 19295840 19298196 -177897236 - L1_Mus2 LINE L1 0 6566 4210 5 732 237 33 0 0 chr1 19298196 19298226 -177897206 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 732 17488 130 8 25 chr1 19298226 19299536 -177895896 - L1_Mus2 LINE L1 -1674 4209 2934 5 732 3299 38 5 10 chr1 19299536 19299934 -177895498 + MTA_Mm LTR MaLR 1 396 0 5 732 8634 60 1 2 chr1 19299934 19301033 -177894399 + MTA_Mm-int LTR MaLR 1 1098 0 5 732 3211 43 10 0 chr1 19301033 19301425 -177894007 + MTA_Mm LTR MaLR 1 396 0 5 732 17488 130 8 25 chr1 19301425 19301492 -177893940 - L1_Mus2 LINE L1 -2950 2933 2888 5 732 3920 94 5 67 chr1 19301492 19302106 -177893326 - L1_Mus1 LINE L1 -1 6566 5991 5 732 17488 130 8 25 chr1 19302106 19302195 -177893237 - L1_Mus2 LINE L1 -2996 2887 2806 5 732 6690 72 20 11 chr1 19302211 19303563 -177891869 - L1Md_F2 LINE L1 -13 6569 5198 5 732 3677 91 0 0 chr1 19303554 19304082 -177891350 + L1Md_F2 LINE L1 4664 5191 -692 5 732 9121 140 3 20 chr1 19304079 19306211 -177889221 - L1_Mus2 LINE L1 -3059 2824 725 5 732 345 252 22 37 chr1 19306220 19306356 -177889076 - L1_Mus2 LINE L1 -5813 803 670 5 732 700 268 54 116 chr1 19306449 19306820 -177888612 - L1VL1 LINE L1 -6019 403 56 5 732 378 0 0 0 chr1 19306886 19306928 -177888504 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 732 522 0 0 0 chr1 19306928 19306985 -177888447 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 732 400 301 0 28 chr1 19307193 19307299 -177888133 - RSINE1 SINE B4 -61 104 2 5 732 926 255 5 0 chr1 19307601 19307805 -177887627 - B3 SINE B2 -7 209 5 5 732 451 358 70 54 chr1 19309142 19309585 -177885847 - L1ME1 LINE L1 -5 6174 5725 5 732 1235 98 4 0 chr1 19309587 19309830 -177885602 + (TCTCC)n Simple_repeat Simple_repeat 1 243 0 5 732 686 102 19 0 chr1 19309830 19309938 -177885494 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 5 732 1060 78 0 0 chr1 19309938 19310079 -177885353 - B1_Mm SINE Alu -1 146 6 5 732 236 221 136 24 chr1 19310088 19310213 -177885219 - L1ME1 LINE L1 -448 5731 5593 5 732 216 171 0 0 chr1 19310236 19310277 -177885155 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 5 732 301 279 35 0 chr1 19310834 19310920 -177884512 - L1MEc LINE L1 -5271 1129 1041 5 732 407 144 41 0 chr1 19310924 19311021 -177884411 + (TA)n Simple_repeat Simple_repeat 2 102 0 5 732 241 222 206 0 chr1 19311152 19311215 -177884217 - ID4_ SINE ID 0 83 8 5 732 373 248 33 74 chr1 19311247 19311369 -177884063 - PB1D10 SINE Alu 0 117 1 5 732 483 302 22 107 chr1 19311465 19311643 -177883789 - RSINE1 SINE B4 0 165 3 5 732 328 308 31 19 chr1 19311707 19311869 -177883563 - L1MEc LINE L1 -5611 789 626 5 732 660 181 0 0 chr1 19312022 19312149 -177883283 + CT-rich Low_complexity Low_complexity 2 128 0 5 732 302 304 78 92 chr1 19312195 19312478 -177882954 - L1MEc LINE L1 -6087 313 35 5 732 295 348 0 34 chr1 19312497 19312616 -177882816 - PB1D10 SINE Alu 0 117 3 5 732 1250 74 46 0 chr1 19313746 19313921 -177881511 - B2_Mm2 SINE B2 -12 183 1 5 732 3065 69 13 0 chr1 19314246 19314637 -177880795 - MTA_Mm LTR MaLR 0 396 1 5 732 8935 49 2 0 chr1 19314637 19315733 -177879699 - MTA_Mm-int LTR MaLR 0 1098 1 5 732 3218 56 5 0 chr1 19315733 19316127 -177879305 - MTA_Mm LTR MaLR 0 396 1 5 732 242 284 0 29 chr1 19317250 19317319 -177878113 + CT-rich Low_complexity Low_complexity 3 69 0 5 732 227 291 44 44 chr1 19317797 19317887 -177877545 + RMER12 LTR ERVK 741 830 -492 5 732 574 261 0 0 chr1 19317910 19318029 -177877403 - RSINE1 SINE B4 -35 130 12 5 732 669 220 103 43 chr1 19318059 19318244 -177877188 - B3A SINE B2 -1 197 2 5 732 293 231 7 36 chr1 19318391 19318530 -177876902 + (TATG)n Simple_repeat Simple_repeat 4 138 0 5 732 417 246 164 0 chr1 19319284 19319406 -177876026 + ID_B1 SINE B4 83 224 0 5 732 1078 93 0 0 chr1 19320679 19320830 -177874602 + B2_Mm2 SINE B2 2 152 -43 5 732 240 250 14 0 chr1 19320831 19320903 -177874529 + Lx9 LINE L1 7560 7632 -12 5 732 378 0 0 0 chr1 19322666 19322708 -177872724 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 732 450 0 0 0 chr1 19323321 19323371 -177872061 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 732 1360 227 75 58 chr1 19323752 19324013 -177871419 - BGLII_B LTR ERVK -36 405 143 5 732 189 0 0 0 chr1 19324013 19324034 -177871398 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5 732 2248 160 42 0 chr1 19324034 19324416 -177871016 - Lx4A LINE L1 -2 7056 6659 5 732 1360 227 75 58 chr1 19324416 19324551 -177870881 - BGLII_B LTR ERVK -299 142 2 5 732 550 271 5 0 chr1 19324980 19325108 -177870324 - B1F2 SINE Alu -7 142 10 5 732 244 260 27 0 chr1 19325572 19325645 -177869787 - ID4 SINE ID -7 76 2 5 732 2041 161 19 92 chr1 19326080 19326505 -177868927 - ORR1B1 LTR MaLR 0 394 1 5 732 308 367 63 54 chr1 19326666 19326888 -177868544 - MLT1N2 LTR MaLR -304 258 35 5 732 274 342 12 12 chr1 19329672 19329752 -177865680 - ID4 SINE ID -1 82 3 5 732 489 299 22 0 chr1 19329761 19329895 -177865537 - B1F2 SINE Alu -11 138 2 5 732 2889 57 17 2 chr1 19331143 19331548 -177863884 - L1_Mm LINE L1 -2370 3513 3103 5 732 3252 80 66 0 chr1 19331548 19332001 -177863431 + L1_Mus1 LINE L1 6085 6567 0 5 732 693 254 78 0 chr1 19332027 19332220 -177863212 + B3 SINE B2 1 208 -8 5 732 1204 296 46 36 chr1 19332294 19332876 -177862556 + L1MB8 LINE L1 5574 6161 -17 5 732 261 0 0 0 chr1 19333595 19333624 -177861808 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 732 1265 299 35 3 chr1 19335208 19335580 -177859852 + Lx5 LINE L1 6577 6960 -90 5 732 801 192 31 0 chr1 19335602 19335801 -177859631 - RMER1A Other Other -160 906 693 5 732 998 148 6 0 chr1 19335801 19335977 -177859455 + CT-rich Low_complexity Low_complexity 2 178 0 5 732 6763 67 24 0 chr1 19335999 19336928 -177858504 - L1_Mus1 LINE L1 0 6567 5617 5 732 1420 228 60 9 chr1 19336930 19337279 -177858153 - RMER1A Other Other -371 659 293 5 732 3580 216 121 12 chr1 19337607 19338516 -177856916 - RMER1B Other Other -2 1064 57 5 732 877 18 0 18 chr1 19338686 19338799 -177856633 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 732 384 310 131 97 chr1 19338859 19339180 -177856252 - ORR1E LTR MaLR -20 339 8 5 732 203 175 18 0 chr1 19339236 19339293 -177856139 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 732 258 315 89 25 chr1 19339516 19339850 -177855582 - L1MC4 LINE L1 -113 7769 7419 5 732 527 78 13 0 chr1 19340056 19340133 -177855299 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 5 732 847 9 28 0 chr1 19340949 19341056 -177854376 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 5 732 1614 197 61 63 chr1 19341058 19341287 -177854145 - Lx2A1 LINE L1 -13 6995 6754 5 732 441 0 0 0 chr1 19341287 19341336 -177854096 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 732 1614 197 61 63 chr1 19341336 19341502 -177853930 - Lx2A1 LINE L1 -255 6753 6601 5 732 295 308 92 0 chr1 19341698 19341828 -177853604 - MER20 DNA MER1_type -75 144 3 5 732 21 0 0 0 chr1 19341943 19341964 -177853468 + AT_rich Low_complexity Low_complexity 1 21 0 5 732 232 282 12 0 chr1 19342934 19343019 -177852413 + L1M1 LINE L1 5845 5930 -370 5 732 648 0 0 0 chr1 19343365 19343437 -177851995 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 732 424 370 21 34 chr1 19343798 19344089 -177851343 + B4A SINE B4 2 288 -4 5 732 250 325 13 0 chr1 19344124 19344201 -177851231 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 732 201 279 0 42 chr1 19344312 19344383 -177851049 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 5 732 275 175 43 100 chr1 19344502 19344572 -177850860 - B4 SINE B4 -209 83 18 5 732 293 257 0 39 chr1 19346072 19346149 -177849283 - ORR1B1-int LTR MaLR -1323 640 567 5 732 2594 218 46 12 chr1 19346191 19346758 -177848674 - ORR1B1-int LTR MaLR -901 608 23 5 732 2143 192 2 5 chr1 19346761 19347154 -177848278 - ORR1B1 LTR MaLR 0 394 3 5 732 24 32 0 0 chr1 19347336 19347367 -177848065 + AT_rich Low_complexity Low_complexity 1 31 0 5 732 195 42 0 0 chr1 19347370 19347394 -177848038 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 732 668 290 38 110 chr1 19347407 19347616 -177847816 + B3A SINE B2 1 194 -1 5 732 228 369 22 9 chr1 19347647 19347785 -177847647 + MIRb SINE MIR 25 165 -111 5 732 12556 160 13 114 chr1 19348610 19351006 -177844426 - L1_Mus2 LINE L1 0 6566 4227 5 732 508 194 0 0 chr1 19351006 19351104 -177844328 + B1_Mus2 SINE Alu 42 139 -8 5 732 414 0 0 0 chr1 19351104 19351150 -177844282 + (CAA)n Simple_repeat Simple_repeat 2 47 0 5 732 17976 161 29 59 chr1 19351150 19351163 -177844269 - L1_Mus2 LINE L1 -1642 4241 4231 5 732 272 305 24 0 chr1 19351163 19351245 -177844187 + PB1D9 SINE Alu 26 109 -11 5 732 17976 161 29 59 chr1 19351245 19351325 -177844107 - L1_Mus2 LINE L1 -1653 4230 4160 5 732 260 250 37 73 chr1 19351325 19351407 -177844025 - PB1D10 SINE Alu 0 117 39 5 732 298 301 36 12 chr1 19351412 19351496 -177843936 - PB1D7 SINE Alu -1 119 34 5 732 17976 161 29 59 chr1 19351496 19351525 -177843907 - L1_Mus2 LINE L1 -1728 4155 4130 5 732 306 298 67 9 chr1 19351525 19351630 -177843802 - PB1D10 SINE Alu -2 115 5 5 732 17976 161 29 59 chr1 19351630 19355990 -177839442 - L1_Mus2 LINE L1 -1642 4129 223 5 732 27 0 0 0 chr1 19356842 19356869 -177838563 + AT_rich Low_complexity Low_complexity 1 27 0 5 732 211 200 0 0 chr1 19357020 19357060 -177838372 + (TATG)n Simple_repeat Simple_repeat 3 42 0 5 732 23 0 0 0 chr1 19357866 19357889 -177837543 + AT_rich Low_complexity Low_complexity 1 23 0 5 732 535 267 82 24 chr1 19358164 19358356 -177837076 + MTE-int LTR MaLR 1327 1530 -50 5 732 699 350 20 24 chr1 19358356 19358608 -177836824 + ORR1E LTR MaLR 4 254 -105 5 732 866 326 4 0 chr1 19358619 19358846 -177836586 - B4 SINE B4 -56 236 9 5 732 1413 74 21 0 chr1 19359041 19359230 -177836202 - B2_Mm1t SINE B2 0 193 1 5 732 285 29 0 0 chr1 19359777 19359811 -177835621 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 732 25 31 0 0 chr1 19359838 19359870 -177835562 + AT_rich Low_complexity Low_complexity 1 32 0 5 732 687 251 15 64 chr1 19360465 19360669 -177834763 - B3A SINE B2 0 198 5 5 732 1446 94 5 0 chr1 19360858 19361071 -177834361 + Lx3_Mus LINE L1 6796 7009 0 5 732 5532 46 7 0 chr1 19361634 19362370 -177833062 + L1Md_F3 LINE L1 3608 4348 -1535 5 732 33803 35 0 0 chr1 19362371 19367797 -177827635 + L1Md_T LINE L1 66 5589 -297 5 732 8927 9 0 0 chr1 19367797 19368793 -177826639 + L1Md_T LINE L1 5590 6585 0 5 732 9599 59 10 0 chr1 19368915 19370197 -177825235 + L1Md_F3 LINE L1 4292 5586 -297 5 732 7870 46 4 28 chr1 19370197 19371205 -177824227 + L1Md_F3 LINE L1 5587 6570 -14 5 732 8053 26 1 0 chr1 19371322 19372510 -177822922 - L1Md_T LINE L1 0 6582 5394 5 732 335 217 102 83 chr1 19374111 19374377 -177821055 - RMER17A2 LTR ERVK -425 481 211 5 732 432 329 40 7 chr1 19374272 19374422 -177821010 - B4A SINE B4 -22 270 116 5 732 469 199 97 10 chr1 19374461 19374579 -177820853 - PB1 SINE Alu -3 124 2 6 732 4718 156 17 1 chr1 19376075 19376905 -177818527 - Lx LINE L1 -21 6633 5791 6 732 3155 179 25 0 chr1 19376904 19377537 -177817895 + Lx LINE L1 5067 5715 -168 6 732 264 385 69 69 chr1 19378040 19378302 -177817130 - B4 SINE B4 -22 270 9 6 732 22 0 0 0 chr1 19379938 19379960 -177815472 + AT_rich Low_complexity Low_complexity 1 22 0 6 732 658 199 6 11 chr1 19380117 19380295 -177815137 + (CATA)n Simple_repeat Simple_repeat 2 178 0 6 732 279 233 19 10 chr1 19380278 19380382 -177815050 + (CATATA)n Simple_repeat Simple_repeat 6 110 0 6 732 1263 268 99 27 chr1 19380484 19381040 -177814392 - Lx8 LINE L1 -28 7445 6850 6 732 225 291 13 0 chr1 19381072 19381151 -177814281 - Lx8 LINE L1 -622 6851 6772 6 732 1168 79 0 0 chr1 19381158 19381310 -177814122 + B2_Mm2 SINE B2 5 156 -39 6 732 225 0 0 0 chr1 19381313 19381338 -177814094 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 732 283 246 0 18 chr1 19381345 19381457 -177813975 + GA-rich Low_complexity Low_complexity 4 113 0 6 732 25800 122 27 8 chr1 19381564 19383783 -177811649 + L1_Mus1 LINE L1 219 2440 -3443 6 732 3079 43 0 0 chr1 19383783 19384156 -177811276 - L1Md_T LINE L1 0 6582 6210 6 732 25800 122 12 16 chr1 19384156 19387339 -177808093 + L1_Mus1 LINE L1 2441 5652 -231 6 732 6324 110 18 11 chr1 19387307 19388725 -177806707 + L1_Mus1 LINE L1 5146 6567 0 6 732 570 134 0 73 chr1 19388734 19388871 -177806561 + L1_Mus2 LINE L1 2034 2160 -3723 6 732 34056 42 0 3 chr1 19388871 19394111 -177801321 + L1Md_T LINE L1 270 5589 -297 6 732 8913 8 0 3 chr1 19394111 19395110 -177800322 + L1Md_T LINE L1 5590 6585 0 6 732 7123 136 94 2 chr1 19395130 19397385 -177798047 + L1_Mus2 LINE L1 3392 6257 -309 6 732 1378 102 0 5 chr1 19397407 19397624 -177797808 + L1_Mus2 LINE L1 6351 6566 0 6 732 551 331 50 18 chr1 19397734 19398017 -177797415 - B4A SINE B4 0 292 1 6 732 1797 156 310 6 chr1 19398168 19398628 -177796804 + RMER6C LTR ERVK 1 608 -82 6 91 240 35 0 0 chr1 19398628 19398657 -177796775 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 733 1797 156 310 6 chr1 19398657 19398725 -177796707 + RMER6C LTR ERVK 609 689 -1 6 733 1585 141 43 7 chr1 19398816 19399095 -177796337 + Lx LINE L1 6366 6654 0 6 733 510 243 27 0 chr1 19399277 19399388 -177796044 + RSINE1 SINE B4 3 116 -49 6 733 866 232 68 93 chr1 19399426 19399872 -177795560 - RMER2 LTR ERV1 -29 538 1 6 733 255 125 0 0 chr1 19400180 19400220 -177795212 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 733 21 36 0 0 chr1 19400398 19400426 -177795006 + AT_rich Low_complexity Low_complexity 1 28 0 6 733 477 336 57 68 chr1 19400479 19400760 -177794672 - B4 SINE B4 -11 281 4 6 733 238 306 40 53 chr1 19400825 19400901 -177794531 - ID4_ SINE ID -4 79 5 6 733 188 338 42 0 chr1 19400973 19401044 -177794388 - L2a LINE L2 -34 3392 3319 6 733 265 210 29 39 chr1 19401854 19401958 -177793474 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 733 577 189 19 0 chr1 19403378 19403484 -177791948 + MTE2b LTR MaLR 1 108 -271 6 733 1917 134 12 60 chr1 19403486 19403819 -177791613 + ORR1A4 LTR MaLR 3 319 -10 6 733 972 268 45 0 chr1 19403824 19404086 -177791346 + MTE2b LTR MaLR 103 376 -3 6 733 282 209 15 0 chr1 19404228 19404295 -177791137 - L1MA5 LINE L1 -369 5931 5864 6 733 314 260 62 10 chr1 19404503 19404600 -177790832 - MIRb SINE MIR -103 165 64 6 733 425 286 87 23 chr1 19405726 19405898 -177789534 - B3A SINE B2 -15 183 1 6 733 325 206 87 51 chr1 19406208 19406346 -177789086 - HAL1 LINE L1 -765 1742 1600 6 733 1341 261 72 0 chr1 19406902 19407247 -177788185 - ORR1D2 LTR MaLR 0 370 1 6 733 190 75 24 48 chr1 19407608 19407650 -177787782 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 6 733 24 0 0 0 chr1 19408305 19408329 -177787103 + AT_rich Low_complexity Low_complexity 1 24 0 6 733 825 96 27 7 chr1 19408686 19408833 -177786599 - L1_Mus3 LINE L1 0 6638 6489 6 733 234 371 76 7 chr1 19408880 19409024 -177786408 - MIRc SINE MIR -113 155 2 6 733 235 316 82 31 chr1 19409855 19409953 -177785479 + B1F SINE Alu 2 104 -45 6 733 256 328 60 40 chr1 19412785 19412985 -177782447 - L1M2 LINE L1 -812 5485 5282 6 733 355 276 59 25 chr1 19413200 19413348 -177782084 + B3A SINE B2 1 156 -37 6 733 1244 236 92 50 chr1 19413469 19413871 -177781561 + MTD LTR MaLR 1 419 0 6 733 256 283 192 0 chr1 19413871 19413991 -177781441 + MTC LTR MaLR 223 365 -56 6 733 2220 102 34 3 chr1 19414009 19414335 -177781097 - L1_Mus2 LINE L1 -6 6560 6225 6 733 241 237 51 38 chr1 19414401 19414480 -177780952 - L2 LINE L2 -836 2583 2504 6 733 541 155 15 23 chr1 19415479 19415611 -177779821 + CT-rich Low_complexity Low_complexity 1 131 0 6 733 507 269 175 14 chr1 19415611 19415822 -177779610 - B4A SINE B4 -46 246 2 6 733 210 37 0 0 chr1 19416387 19416414 -177779018 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 6 733 297 0 0 0 chr1 19416641 19416674 -177778758 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 733 300 270 0 0 chr1 19416957 19417031 -177778401 - MER58B DNA MER1_type -226 115 42 6 733 459 63 0 0 chr1 19417113 19417176 -177778256 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 733 678 216 0 0 chr1 19417290 19417461 -177777971 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 733 282 290 0 0 chr1 19417794 19417863 -177777569 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 6 733 21 0 0 0 chr1 19418955 19418976 -177776456 + AT_rich Low_complexity Low_complexity 1 21 0 6 733 4733 73 0 0 chr1 19419099 19419902 -177775530 - L1_Mus1 LINE L1 -341 6225 5424 6 733 2582 71 3 0 chr1 19419905 19420245 -177775187 + L1_Mus1 LINE L1 6226 6566 -1 6 733 280 261 42 118 chr1 19420623 19420779 -177774653 - L1MC3 LINE L1 -22 7763 7617 6 733 484 266 194 17 chr1 19420779 19420959 -177774473 - B3 SINE B2 0 216 5 6 733 280 261 42 118 chr1 19420959 19421115 -177774317 - L1MC3 LINE L1 -169 7616 7475 6 733 2094 225 51 139 chr1 19421165 19421361 -177774071 + Lx6 LINE L1 1822 2028 -3852 6 733 270 0 0 0 chr1 19421361 19421391 -177774041 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 733 2094 225 51 139 chr1 19421391 19421527 -177773905 + Lx6 LINE L1 2029 2097 -3783 6 733 252 0 0 0 chr1 19421527 19421555 -177773877 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 733 2739 192 71 31 chr1 19421555 19422330 -177773102 + Lx6 LINE L1 2065 2833 -3047 6 733 4797 202 46 147 chr1 19422350 19423179 -177772253 + Lx6 LINE L1 4282 5152 -728 6 733 442 89 0 12 chr1 19423179 19423259 -177772173 - L1_Mus2 LINE L1 -1 6565 6487 6 733 4797 226 47 92 chr1 19423259 19424807 -177770625 + Lx6 LINE L1 5153 6771 -689 6 733 38746 15 0 6 chr1 19424806 19430986 -177764446 - L1Md_A LINE L1 0 6582 443 6 733 1474 276 85 36 chr1 19430987 19431511 -177763921 + Lx6 LINE L1 6458 6982 -68 6 733 396 40 0 0 chr1 19431511 19431561 -177763871 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 733 1474 277 73 46 chr1 19431561 19431612 -177763820 + Lx6 LINE L1 6983 7032 -18 6 733 202 208 0 0 chr1 19431627 19431680 -177763752 + A-rich Low_complexity Low_complexity 1 53 0 6 733 720 320 98 10 chr1 19431683 19432175 -177763257 - L1MC3 LINE L1 -613 7172 6638 6 733 468 299 14 29 chr1 19432507 19432645 -177762787 - B1F1 SINE Alu -1 148 13 6 733 377 291 16 71 chr1 19432537 19432663 -177762769 - ID_B1 SINE B4 -26 198 80 6 733 203 0 0 36 chr1 19433831 19433859 -177761573 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 733 35961 47 1 3 chr1 19433913 19440343 -177755089 - L1Md_T LINE L1 0 6585 76 6 733 243 0 0 0 chr1 19441824 19441851 -177753581 + (T)n Simple_repeat Simple_repeat 1 27 0 6 733 594 254 243 23 chr1 19442802 19442979 -177752453 - B3 SINE B2 0 216 1 6 733 189 107 0 0 chr1 19444760 19444788 -177750644 + (A)n Simple_repeat Simple_repeat 1 28 0 6 733 467 379 29 5 chr1 19445456 19445663 -177749769 - MER20 DNA MER1_type -4 215 4 6 733 299 287 64 44 chr1 19446035 19446187 -177749245 - MLT1A LTR MaLR 0 390 214 6 733 2807 43 14 0 chr1 19446233 19446580 -177748852 + L1_Mus1 LINE L1 6216 6567 0 6 733 251 122 20 0 chr1 19446867 19446916 -177748516 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 6 733 216 349 67 126 chr1 19446949 19446962 -177748470 - B3 SINE B2 -6 210 176 6 733 261 280 47 118 chr1 19446962 19447047 -177748385 - RSINE1 SINE B4 0 165 87 6 733 216 349 67 126 chr1 19447047 19447071 -177748361 - B3 SINE B2 -6 175 102 6 733 3743 70 4 2 chr1 19447071 19447560 -177747872 - L1Md_F2 LINE L1 -12 6570 6081 6 733 216 349 67 126 chr1 19447560 19447577 -177747855 - B3 SINE B2 -115 101 2 6 733 394 284 0 12 chr1 19447577 19447659 -177747773 - RSINE1 SINE B4 -83 82 2 6 733 254 367 73 20 chr1 19448258 19448408 -177747024 + MIR SINE MIR 32 189 -73 6 733 890 166 71 6 chr1 19449677 19449859 -177745573 + Lx LINE L1 6461 6654 0 6 733 246 122 0 0 chr1 19449859 19449894 -177745538 + (A)n Simple_repeat Simple_repeat 1 35 0 6 733 207 139 0 0 chr1 19452024 19452060 -177743372 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 6 733 496 339 118 62 chr1 19453036 19453376 -177742056 - ORR1E LTR MaLR 0 359 1 6 733 282 327 106 0 chr1 19453624 19453737 -177741695 + LTR16B LTR ERVL 337 461 -2 6 733 279 303 0 13 chr1 19454232 19454309 -177741123 - ORR1E LTR MaLR -239 120 45 6 733 2683 191 9 24 chr1 19454849 19455387 -177740045 + Lx2B LINE L1 6470 6999 -1 6 733 917 255 0 20 chr1 19455830 19455997 -177739435 + B3 SINE B2 1 167 -49 6 733 198 103 0 0 chr1 19455997 19456026 -177739406 + (CATA)n Simple_repeat Simple_repeat 4 32 0 6 733 917 255 0 20 chr1 19456026 19456062 -177739370 + B3 SINE B2 168 200 -16 6 733 427 333 32 7 chr1 19456372 19456526 -177738906 - MIR SINE MIR -53 209 52 6 733 652 214 56 0 chr1 19457963 19458089 -177737343 + B1_Mur4 SINE Alu 1 133 -17 6 733 446 303 178 47 chr1 19458156 19458409 -177737023 - MLT1F2 LTR MaLR -138 422 137 6 733 2254 316 60 21 chr1 19458820 19459716 -177735716 - Lx8 LINE L1 -154 7319 6389 6 733 381 302 92 15 chr1 19460621 19460752 -177734680 + RSINE1 SINE B4 20 160 -5 6 733 567 78 0 0 chr1 19460763 19460840 -177734592 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 733 4580 33 5 0 chr1 19460863 19461415 -177734017 - L1Md_F3 LINE L1 0 6584 6030 6 733 2967 46 15 20 chr1 19461415 19461770 -177733662 + L1Md_F3 LINE L1 5655 6015 -569 6 733 618 49 0 0 chr1 19461770 19461852 -177733580 + (CTATA)n Simple_repeat Simple_repeat 2 83 0 6 733 2967 46 15 20 chr1 19461852 19461895 -177733537 + L1Md_F3 LINE L1 6016 6050 -534 6 733 326 42 21 0 chr1 19462337 19462385 -177733047 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 6 733 2212 128 6 0 chr1 19462491 19462818 -177732614 + ORR1A4 LTR MaLR 1 329 0 6 733 358 357 97 28 chr1 19462838 19463054 -177732378 + LTR33 LTR ERVL 279 509 -6 6 733 1103 101 0 0 chr1 19464984 19465132 -177730300 - B1_Mus1 SINE Alu 0 148 1 7 733 246 329 12 12 chr1 19465186 19465269 -177730163 - ID4_ SINE ID 0 83 1 7 733 285 75 0 0 chr1 19466249 19466289 -177729143 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 733 411 266 90 7 chr1 19467455 19467610 -177727822 + L1MB3 LINE L1 6007 6174 -9 7 733 2412 270 163 11 chr1 19468224 19469401 -177726031 - L1_Mur3 LINE L1 -805 5075 3720 7 733 834 269 129 96 chr1 19469407 19469802 -177725630 + MTD LTR MaLR 5 412 -7 7 733 180 0 0 0 chr1 19469869 19469889 -177725543 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 733 2069 191 15 15 chr1 19469931 19470324 -177725108 + MTB_Mm LTR MaLR 5 397 -10 7 733 446 0 0 18 chr1 19470798 19470853 -177724579 + (TTG)n Simple_repeat Simple_repeat 1 54 0 7 733 4177 97 14 30 chr1 19471152 19471897 -177723535 - L1Md_F2 LINE L1 0 6582 5935 7 733 205 276 0 28 chr1 19472378 19472486 -177722946 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 7 733 405 0 0 0 chr1 19473724 19473769 -177721663 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 733 433 298 65 0 chr1 19473787 19473911 -177721521 - RSINE1 SINE B4 -31 134 3 7 733 12029 101 14 1 chr1 19474435 19476951 -177718481 - L1_Mus2 LINE L1 -1 6565 4021 7 733 1627 179 66 77 chr1 19477018 19477368 -177718064 + ORR1B1 LTR MaLR 49 394 0 7 733 246 394 37 15 chr1 19478037 19478171 -177717261 + MLT1F2 LTR MaLR 72 208 -352 7 733 310 359 37 106 chr1 19478224 19478404 -177717028 + MLT1F2 LTR MaLR 324 493 -67 7 733 1638 172 80 57 chr1 19478404 19478793 -177716639 + RMER10B LTR ERVL 1 398 0 7 733 310 359 37 106 chr1 19478793 19478830 -177716602 + MLT1F2 LTR MaLR 494 526 -34 7 733 316 383 45 7 chr1 19479471 19479626 -177715806 + MIR3 SINE MIR 20 180 -28 7 733 25 0 0 0 chr1 19479743 19479768 -177715664 + AT_rich Low_complexity Low_complexity 1 25 0 7 733 23 0 0 0 chr1 19480040 19480063 -177715369 + AT_rich Low_complexity Low_complexity 1 23 0 7 733 7157 95 36 6 chr1 19480909 19482150 -177713282 - L1Md_F2 LINE L1 -2 6564 5270 7 733 32779 82 9 9 chr1 19482122 19485196 -177710236 - L1Md_F2 LINE L1 -11 6571 3478 7 733 180 0 0 0 chr1 19485196 19485216 -177710216 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 733 32779 119 43 25 chr1 19485216 19488460 -177706972 - L1Md_F2 LINE L1 -2406 3477 214 7 733 289 320 0 64 chr1 19488632 19488742 -177706690 - Lx7 LINE L1 -376 7320 7218 7 733 1517 310 93 52 chr1 19489017 19490643 -177704789 - L1M2 LINE L1 -326 5554 3842 7 733 320 128 34 23 chr1 19490649 19490737 -177704695 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 7 733 838 255 56 65 chr1 19490789 19491130 -177704302 + Lx7 LINE L1 7257 7591 -105 7 733 414 0 0 0 chr1 19491130 19491176 -177704256 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 733 838 255 56 65 chr1 19491176 19491278 -177704154 + Lx7 LINE L1 7592 7696 0 7 733 1114 317 71 14 chr1 19491371 19492221 -177703211 - L1M2 LINE L1 -2273 3870 2973 7 733 986 222 62 16 chr1 19492413 19492603 -177702829 - MTD LTR MaLR -20 399 199 7 733 279 0 0 0 chr1 19492603 19492634 -177702798 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 733 986 222 62 16 chr1 19492634 19492686 -177702746 - MTD LTR MaLR -221 198 147 7 733 700 180 36 0 chr1 19492686 19492825 -177702607 + L1_Mus2 LINE L1 6423 6566 0 7 733 189 0 0 0 chr1 19492848 19492869 -177702563 + (A)n Simple_repeat Simple_repeat 1 21 0 7 733 279 0 0 0 chr1 19493025 19493056 -177702376 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 7 733 29 28 0 0 chr1 19493834 19493870 -177701562 + AT_rich Low_complexity Low_complexity 1 36 0 7 733 1039 83 6 0 chr1 19494274 19494431 -177701001 + L1Md_F2 LINE L1 6424 6581 -1 7 733 198 0 0 0 chr1 19494721 19494743 -177700689 + (CAG)n Simple_repeat Simple_repeat 2 23 0 7 733 411 113 0 0 chr1 19495138 19495200 -177700232 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 733 2174 62 0 0 chr1 19495722 19495994 -177699438 - L1_Mus1 LINE L1 -3 6564 6293 7 733 374 359 65 15 chr1 19496060 19496261 -177699171 - MER20 DNA MER1_type -7 212 2 7 733 2399 170 7 16 chr1 19496919 19497344 -177698088 - MTC LTR MaLR 0 421 1 7 733 289 283 56 28 chr1 19497495 19497637 -177697795 + L1ME2z LINE L1 6217 6362 -82 7 733 258 333 56 0 chr1 19498609 19498699 -177696733 + B4 SINE B4 1 95 -197 7 733 301 343 39 29 chr1 19499275 19499377 -177696055 + RSINE1 SINE B4 57 159 -6 7 733 818 154 21 0 chr1 19500475 19500618 -177694814 - B1_Mus1 SINE Alu -1 147 2 1 733 225 132 0 0 chr1 19501042 19501080 -177694352 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 2 733 1224 268 64 60 chr1 19502059 19502654 -177692778 - Lx6 LINE L1 -26 7434 6471 3 733 806 302 12 16 chr1 19502643 19502885 -177692547 - Lx6 LINE L1 -687 6363 6123 3 733 948 139 0 0 chr1 19502960 19502971 -177692461 - B1_Mus1 SINE Alu 0 148 138 4 733 396 0 0 0 chr1 19502971 19503015 -177692417 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 733 948 139 0 0 chr1 19503015 19503147 -177692285 - B1_Mus1 SINE Alu -11 137 6 4 733 606 336 29 29 chr1 19504186 19504459 -177690973 + MLT1D LTR MaLR 231 503 -2 6 733 458 307 114 49 chr1 19505273 19505581 -177689851 + ORR1D2 LTR MaLR 43 370 0 7 733 346 372 32 5 chr1 19506264 19506453 -177688979 + MER58A DNA MER1_type 2 195 -29 8 733 2497 52 9 0 chr1 19506455 19506779 -177688653 + L1Md_F3 LINE L1 6257 6583 -1 9 733 854 129 7 7 chr1 19507338 19507486 -177687946 - Lx2 LINE L1 0 6997 6850 1 733 396 0 0 0 chr1 19507557 19507601 -177687831 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 733 1845 309 40 30 chr1 19507605 19508345 -177687087 - Lx9 LINE L1 -228 7416 6669 1 733 5260 57 40 1 chr1 19508692 19509374 -177686058 - L1_Mus1 LINE L1 -2 6565 5858 1 733 6521 90 26 3 chr1 19509944 19510970 -177684462 - L1_Mus2 LINE L1 0 6566 5636 1 733 8454 174 37 73 chr1 19510971 19513492 -177681940 - L1VL2 LINE L1 -3236 2647 220 1 733 1087 216 14 32 chr1 19513618 19513895 -177681537 + Lx2B LINE L1 6729 7000 0 1 733 6424 73 16 0 chr1 19515898 19516744 -177678688 - L1_Mus1 LINE L1 -2 6565 5706 1 733 2470 144 3 0 chr1 19516761 19517149 -177678283 - L1_Mm LINE L1 -708 5175 4787 1 733 545 83 0 0 chr1 19517140 19517212 -177678220 - L1_Mm LINE L1 -2339 3544 3473 1 733 3384 60 0 0 chr1 19517212 19517629 -177677803 - L1_Mm LINE L1 0 5883 5467 1 733 644 339 6 0 chr1 19518150 19518318 -177677114 - B3 SINE B2 -46 170 2 2 733 744 216 0 28 chr1 19518333 19518476 -177676956 - B1_Mur2 SINE Alu -2 147 9 2 733 25 0 0 0 chr1 19518795 19518820 -177676612 + AT_rich Low_complexity Low_complexity 1 25 0 2 733 892 236 57 19 chr1 19518889 19519101 -177676331 + MER58A DNA MER1_type 4 223 -1 2 733 324 224 60 0 chr1 19519663 19519730 -177675702 - ID4_ SINE ID -11 72 2 2 733 36 40 0 0 chr1 19519742 19519792 -177675640 + AT_rich Low_complexity Low_complexity 1 50 0 2 733 405 0 0 0 chr1 19520098 19520143 -177675289 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2 733 1648 63 0 0 chr1 19520143 19520366 -177675066 + RLTR22_Mus LTR ERVK 554 776 -1032 2 733 3368 45 19 5 chr1 19520371 19520798 -177674634 - L1Md_F2 LINE L1 -14 6568 6136 2 733 311 309 51 8 chr1 19520958 19521193 -177674239 - L1MEe LINE L1 -3135 3011 2767 2 733 685 295 97 83 chr1 19521326 19522335 -177673097 - L1MEe LINE L1 -3953 2213 1203 2 733 219 150 0 0 chr1 19522497 19522537 -177672895 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 3 733 189 211 0 0 chr1 19522545 19522597 -177672835 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 733 22 35 0 0 chr1 19522656 19522685 -177672747 + AT_rich Low_complexity Low_complexity 1 29 0 3 733 523 330 28 14 chr1 19523627 19523839 -177671593 - B3 SINE B2 -1 215 1 3 733 21 71 0 0 chr1 19524120 19524162 -177671270 + AT_rich Low_complexity Low_complexity 1 42 0 3 733 210 208 0 0 chr1 19524304 19524357 -177671075 + GA-rich Low_complexity Low_complexity 3 55 0 3 733 261 357 86 0 chr1 19524516 19524656 -177670776 + MIR SINE MIR 98 249 -13 3 733 600 14 0 0 chr1 19525839 19525908 -177669524 + (ATGTG)n Simple_repeat Simple_repeat 1 69 0 3 733 478 311 42 38 chr1 19525930 19526194 -177669238 - L1MA9 LINE L1 -153 6159 5895 3 733 1211 128 79 0 chr1 19526309 19526512 -177668920 - L1_Mur2 LINE L1 -1277 4600 4382 3 733 719 295 61 24 chr1 19526586 19527088 -177668344 - L1MA9 LINE L1 -431 5758 5231 3 733 999 139 0 0 chr1 19527484 19527664 -177667768 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 733 514 306 120 21 chr1 19527733 19528111 -177667321 - L1MA7 LINE L1 -463 5828 5438 4 733 363 312 23 59 chr1 19528147 19528240 -177667192 + L1MA6 LINE L1 5616 5708 -592 4 733 837 0 0 0 chr1 19528240 19528333 -177667099 + (TTC)n Simple_repeat Simple_repeat 1 93 0 4 733 1150 75 0 0 chr1 19528333 19528492 -177666940 - L1_Mus2 LINE L1 -9 6557 6399 4 733 363 312 23 59 chr1 19528492 19528618 -177666814 + L1MA6 LINE L1 5709 5827 -473 4 733 386 256 29 22 chr1 19528646 19528782 -177666650 - L1MA7 LINE L1 -1409 4734 4598 4 733 820 251 21 5 chr1 19529008 19529200 -177666232 - Lx6 LINE L1 -4 7456 7262 4 733 1054 242 115 130 chr1 19529200 19529624 -177665808 - Lx6 LINE L1 -1324 6136 5681 4 91 4446 67 3 29 chr1 19529624 19530220 -177665212 + L1_Mus2 LINE L1 5985 6565 -1 4 734 1054 242 115 130 chr1 19530220 19530327 -177665105 - Lx6 LINE L1 -1780 5680 5613 4 734 807 121 0 0 chr1 19530330 19530446 -177664986 - ORR1A4 LTR MaLR 0 329 214 4 734 2999 171 12 30 chr1 19530444 19531006 -177664426 + RLTR31_Mm LTR ERVK 10 561 0 4 734 796 181 352 0 chr1 19531015 19531225 -177664207 - Lx6 LINE L1 -269 5611 5328 4 734 2825 163 88 24 chr1 19531214 19532061 -177663371 - Lx6 LINE L1 -1567 4313 3315 4 734 365 280 95 50 chr1 19532105 19532327 -177663105 - L1MA7 LINE L1 -2797 3346 3115 4 734 953 76 98 0 chr1 19532327 19532459 -177662973 - B1_Mm SINE Alu 0 147 3 4 734 23 33 0 0 chr1 19533801 19533831 -177661601 + AT_rich Low_complexity Low_complexity 1 30 0 5 734 226 345 46 0 chr1 19533974 19534061 -177661371 + MIR3 SINE MIR 83 173 -35 5 734 441 0 0 0 chr1 19534645 19534694 -177660738 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 734 25660 129 62 32 chr1 19534980 19541116 -177654316 + L1_Mus2 LINE L1 231 6565 -1 5 734 4622 92 47 12 chr1 19541116 19541796 -177653636 + L1_Mus2 LINE L1 5862 6565 -1 5 734 23 54 0 0 chr1 19541805 19541842 -177653590 + AT_rich Low_complexity Low_complexity 1 37 0 5 734 3706 77 18 16 chr1 19542483 19542986 -177652446 + L1Md_F2 LINE L1 6067 6570 -12 5 734 523 392 83 35 chr1 19543066 19543154 -177652278 - MLT1J-int LTR MaLR -300 1087 1004 5 734 2400 69 36 65 chr1 19543154 19543510 -177651922 + ORR1A1 LTR MaLR 1 346 0 5 734 523 392 83 35 chr1 19543510 19543939 -177651493 - MLT1J-int LTR MaLR -384 1003 546 5 734 240 384 101 18 chr1 19543966 19544048 -177651384 - MLT1J-int LTR MaLR -911 476 388 5 734 6290 62 18 28 chr1 19544048 19544897 -177650535 + L1Md_F2 LINE L1 5741 6580 -2 5 734 240 384 101 18 chr1 19544897 19545140 -177650292 - MLT1J-int LTR MaLR -1000 387 124 5 734 362 288 39 39 chr1 19546002 19546132 -177649300 + L1ME3A LINE L1 5695 5824 -338 6 734 306 301 72 14 chr1 19546159 19546297 -177649135 + L1ME3A LINE L1 5901 6046 -127 6 734 1078 318 84 9 chr1 19546324 19546790 -177648642 + MLT1D LTR MaLR 3 503 -2 6 734 843 143 62 42 chr1 19547370 19547611 -177647821 - Lx9 LINE L1 -1 7643 7398 6 734 267 275 110 0 chr1 19550037 19550128 -177645304 - MIR SINE MIR -139 123 23 6 734 293 298 41 22 chr1 19550177 19550321 -177645111 + MIR SINE MIR 108 263 -5 6 734 1206 317 54 60 chr1 19550809 19551537 -177643895 + Lx8 LINE L1 6749 7471 -2 6 734 1390 261 34 57 chr1 19553047 19553465 -177641967 - MTD LTR MaLR 0 419 12 6 734 225 337 50 83 chr1 19558539 19558698 -177636734 + MIRc SINE MIR 23 174 -94 6 734 645 196 178 11 chr1 19559455 19559646 -177635786 + URR1B DNA MER1_type 3 225 0 6 734 1026 219 6 0 chr1 19560090 19560273 -177635159 - B3 SINE B2 -31 185 2 6 734 328 307 91 26 chr1 19560445 19560599 -177634833 + MER3 DNA MER1_type 6 169 -40 7 734 26 0 0 0 chr1 19560599 19560625 -177634807 + AT_rich Low_complexity Low_complexity 1 26 0 7 734 187 31 62 0 chr1 19561316 19561348 -177634084 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 734 3773 148 26 5 chr1 19561631 19562251 -177633181 + Lx4A LINE L1 6423 7055 -3 7 734 243 0 0 0 chr1 19562254 19562281 -177633151 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 7 734 539 15 15 0 chr1 19562799 19562867 -177632565 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 7 734 250 313 19 48 chr1 19563095 19563199 -177632233 + L4 LINE RTE 353 453 -1576 7 734 400 298 115 22 chr1 19563368 19563550 -177631882 + L4 LINE RTE 674 872 -1157 7 734 339 332 36 15 chr1 19563579 19563775 -177631657 + ORSL-2a DNA Tip100 28 227 -115 7 734 21 0 0 0 chr1 19564259 19564280 -177631152 + AT_rich Low_complexity Low_complexity 1 21 0 7 734 203 372 68 30 chr1 19564763 19564896 -177630536 + L4 LINE RTE 1604 1741 -288 7 734 26 0 0 0 chr1 19564985 19565011 -177630421 + AT_rich Low_complexity Low_complexity 1 26 0 7 734 243 359 75 19 chr1 19566821 19566980 -177628452 - MIRc SINE MIR -49 219 52 8 734 828 152 48 120 chr1 19567316 19567525 -177627907 - B2_Mm2 SINE B2 -1 194 1 8 734 225 0 0 0 chr1 19567634 19567659 -177627773 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 8 734 424 303 89 32 chr1 19568065 19568222 -177627210 - B4A SINE B4 -14 278 113 8 734 261 324 65 0 chr1 19568284 19568392 -177627040 - MER46C DNA MER2_type -186 152 38 8 734 1028 58 0 0 chr1 19568798 19568935 -177626497 - B1_Mus2 SINE Alu 0 147 11 8 734 1446 41 10 10 chr1 19569243 19569438 -177625994 - L1Md_F3 LINE L1 -14 6570 6376 8 734 4477 47 2 2 chr1 19569438 19569989 -177625443 + L1_Mm LINE L1 5155 5705 -178 8 734 268 333 107 17 chr1 19570639 19570816 -177624616 - L3b LINE CR1 -5 477 285 8 734 363 23 0 0 chr1 19571472 19571516 -177623916 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 734 343 273 92 25 chr1 19571643 19571990 -177623442 + MLT2B1 LTR ERVL 5 554 -13 9 734 186 256 23 0 chr1 19571998 19572041 -177623391 - MIR SINE MIR -66 142 99 9 734 315 177 31 0 chr1 19572420 19572516 -177622916 + GA-rich Low_complexity Low_complexity 1 99 0 9 734 375 78 0 0 chr1 19574521 19574572 -177620860 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 734 1020 79 0 0 chr1 19574572 19574711 -177620721 + (GA)n Simple_repeat Simple_repeat 1 139 0 9 734 501 314 82 25 chr1 19574849 19575045 -177620387 + MER20 DNA MER1_type 3 209 -10 9 734 818 292 149 9 chr1 19575611 19575926 -177619506 + Lx5 LINE L1 6661 7019 -31 9 734 36 0 0 0 chr1 19576361 19576397 -177619035 + AT_rich Low_complexity Low_complexity 1 36 0 9 734 358 180 61 12 chr1 19576397 19576560 -177618872 + (TA)n Simple_repeat Simple_repeat 1 171 0 9 734 238 299 92 17 chr1 19577563 19577682 -177617750 - MIR SINE MIR -17 245 118 9 734 232 311 18 24 chr1 19578285 19578453 -177616979 + GA-rich Low_complexity Low_complexity 2 168 0 1 734 237 119 0 0 chr1 19579655 19579697 -177615735 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 734 1252 299 30 26 chr1 19579746 19580212 -177615220 - Lx9 LINE L1 -297 7347 6880 1 734 644 133 0 10 chr1 19580225 19580324 -177615108 - L1_Mus4 LINE L1 -450 6186 6089 1 734 2940 78 0 0 chr1 19580326 19580712 -177614720 + L1_Mus4 LINE L1 5689 6074 -562 1 734 586 283 81 33 chr1 19581364 19581406 -177614026 - L1_Mur3 LINE L1 -6425 1287 1237 1 734 447 19 0 0 chr1 19581406 19581458 -177613974 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 734 586 265 204 29 chr1 19581458 19581812 -177613620 - L1_Mur3 LINE L1 -6476 1236 827 1 734 5638 57 0 1 chr1 19581825 19582530 -177612902 + L1_Mus1 LINE L1 5864 6567 0 1 734 912 284 20 86 chr1 19582952 19583498 -177611934 + Lx8 LINE L1 5379 5920 -1553 1 734 463 215 33 0 chr1 19585103 19585224 -177610208 - Lx9 LINE L1 -1 7643 7519 1 734 484 318 27 64 chr1 19585352 19585540 -177609892 + B4A SINE B4 110 290 -2 1 734 342 45 0 0 chr1 19585864 19585908 -177609524 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 734 2060 219 70 8 chr1 19585918 19586407 -177609025 - Lx9 LINE L1 -217 7427 6909 1 734 329 224 0 0 chr1 19586670 19586728 -177608704 - Lx9 LINE L1 -728 6916 6859 1 734 297 0 0 0 chr1 19587130 19587163 -177608269 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 734 238 303 13 26 chr1 19587346 19587424 -177608008 - B4A SINE B4 0 292 216 1 734 269 281 98 0 chr1 19587676 19587758 -177607674 - B4 SINE B4 -169 123 34 1 734 315 0 0 0 chr1 19587772 19587807 -177607625 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1 734 480 338 48 34 chr1 19587807 19588015 -177607417 - B4A SINE B4 -81 211 1 1 734 611 176 56 0 chr1 19588498 19588623 -177606809 - URR1B DNA MER1_type 0 225 94 1 734 1468 214 106 19 chr1 19588623 19588999 -177606433 - Lx2B LINE L1 -5 6995 6587 1 734 519 217 0 0 chr1 19589005 19589088 -177606344 - URR1B DNA MER1_type -141 84 2 1 734 1242 81 52 31 chr1 19589282 19589474 -177605958 - L1Md_F2 LINE L1 -2 6580 6385 1 734 198 0 0 0 chr1 19589482 19589504 -177605928 + (T)n Simple_repeat Simple_repeat 1 22 0 1 734 24 32 0 0 chr1 19589511 19589542 -177605890 + AT_rich Low_complexity Low_complexity 1 31 0 1 734 482 322 22 0 chr1 19589813 19589993 -177605439 - B3A SINE B2 -14 184 1 1 734 3095 98 13 15 chr1 19590401 19590865 -177604567 + L1_Mus3 LINE L1 6176 6638 0 1 734 329 138 14 58 chr1 19591708 19591738 -177603694 + HAL1-3A_ME LINE L1 1976 2002 -856 1 734 423 0 0 0 chr1 19591738 19591785 -177603647 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 734 329 138 14 58 chr1 19591785 19591823 -177603609 + HAL1-3A_ME LINE L1 2003 2041 -817 1 734 307 253 113 57 chr1 19592414 19592573 -177602859 - L1MA5 LINE L1 -20 6280 6113 1 734 318 242 30 59 chr1 19592752 19592853 -177602579 - L1MA5 LINE L1 -709 5594 5497 1 734 642 331 69 42 chr1 19592916 19593612 -177601820 - L1MA5 LINE L1 -775 5368 4654 1 734 245 333 27 9 chr1 19593646 19593758 -177601674 - Lx7 LINE L1 -20 7676 7563 1 734 2249 281 47 11 chr1 19593757 19594415 -177601017 - Lx7 LINE L1 -286 7410 6729 1 734 443 310 35 0 chr1 19594415 19594589 -177600843 - L1MA5 LINE L1 -1465 4678 4499 1 734 459 0 0 0 chr1 19594589 19594640 -177600792 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 734 24 0 0 0 chr1 19594823 19594847 -177600585 + AT_rich Low_complexity Low_complexity 1 24 0 1 734 1198 29 0 0 chr1 19595088 19595228 -177600204 + B1_Mm SINE Alu 1 140 -7 1 734 227 123 35 0 chr1 19596720 19596777 -177598655 - Lx9 LINE L1 0 7644 7586 1 734 4305 234 85 19 chr1 19596808 19597312 -177598120 - Lx9 LINE L1 -168 7476 6955 1 734 203 0 37 0 chr1 19597312 19597339 -177598093 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 734 4305 234 85 19 chr1 19597339 19598055 -177597377 - Lx9 LINE L1 -690 6954 6176 1 734 375 250 8 46 chr1 19598337 19598467 -177596965 - L1MA8 LINE L1 -4 6287 6163 1 734 232 318 82 0 chr1 19598474 19598584 -177596848 - MIR SINE MIR -131 131 13 1 734 332 94 0 19 chr1 19599504 19599558 -177595874 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 734 678 189 379 20 chr1 19599558 19599806 -177595626 - Lx9 LINE L1 -134 7510 7174 1 734 597 72 0 0 chr1 19600297 19600380 -177595052 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 1 734 391 290 18 18 chr1 19600483 19600592 -177594840 - PB1D10 SINE Alu 0 117 9 1 734 315 312 86 53 chr1 19600598 19600842 -177594590 + L1ME4a LINE L1 5641 5892 -232 1 734 230 244 186 0 chr1 19601001 19601087 -177594345 + B4 SINE B4 173 274 -18 1 734 268 225 0 53 chr1 19601100 19601175 -177594257 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 1 734 23 54 0 0 chr1 19601258 19601295 -177594137 + AT_rich Low_complexity Low_complexity 1 37 0 1 734 317 236 14 14 chr1 19602311 19602384 -177593048 + ID4 SINE ID 9 81 -2 1 734 259 319 32 81 chr1 19602403 19602526 -177592906 + PB1D9 SINE Alu 4 120 0 1 734 181 182 23 0 chr1 19603487 19603531 -177591901 + MIRm SINE MIR 93 137 -139 1 734 2376 75 36 9 chr1 19603655 19603990 -177591442 - L1Md_F2 LINE L1 -13 6569 6226 1 734 31 0 0 0 chr1 19604432 19604463 -177590969 + AT_rich Low_complexity Low_complexity 1 31 0 1 734 213 108 0 0 chr1 19604463 19604500 -177590932 + (TATAA)n Simple_repeat Simple_repeat 1 37 0 1 734 24 0 0 0 chr1 19604544 19604568 -177590864 + AT_rich Low_complexity Low_complexity 1 24 0 1 734 508 202 206 39 chr1 19604777 19604957 -177590475 - MTD LTR MaLR 0 419 210 1 734 399 267 194 0 chr1 19605082 19605262 -177590170 - L1_Mur3 LINE L1 -812 5068 4854 1 734 205 281 62 0 chr1 19606500 19606564 -177588868 + L2a LINE L2 3340 3407 -19 1 734 387 92 0 0 chr1 19606899 19606964 -177588468 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 734 209 220 40 0 chr1 19607437 19607487 -177587945 - MIRm SINE MIR -135 141 90 1 734 24 113 0 0 chr1 19607978 19608093 -177587339 + AT_rich Low_complexity Low_complexity 1 115 0 1 734 213 339 18 0 chr1 19608162 19608218 -177587214 + ID4_ SINE ID 6 62 -21 1 734 251 167 0 32 chr1 19608398 19608460 -177586972 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 1 734 241 233 0 143 chr1 19608564 19608634 -177586798 - B3 SINE B2 -153 63 4 1 734 836 194 14 0 chr1 19608775 19608919 -177586513 + B1_Mus1 SINE Alu 3 148 0 1 734 221 221 0 29 chr1 19608919 19608989 -177586443 + A-rich Low_complexity Low_complexity 6 73 0 1 734 744 303 5 39 chr1 19609285 19609491 -177585941 - B3 SINE B2 -2 214 16 1 734 414 0 0 0 chr1 19609498 19609544 -177585888 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 734 797 162 7 21 chr1 19609544 19609689 -177585743 - B1_Mus2 SINE Alu -3 144 2 1 734 494 289 42 66 chr1 19609808 19609975 -177585457 - RSINE1 SINE B4 0 165 3 1 734 660 26 0 0 chr1 19610036 19610114 -177585318 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 734 212 188 42 0 chr1 19610542 19610590 -177584842 + G-rich Low_complexity Low_complexity 5 54 0 1 734 240 69 0 0 chr1 19611339 19611368 -177584064 - L1Md_A LINE L1 -120 6462 6434 1 734 589 90 0 0 chr1 19611368 19611457 -177583975 + L1_Mus1 LINE L1 6479 6567 0 1 734 3127 22 0 13 chr1 19612436 19612808 -177582624 + IAPLTR1_Mm LTR ERVK 1 367 0 1 734 52343 29 14 4 chr1 19612810 19619281 -177576151 + IAPEz-int LTR ERVK 3 6481 0 1 734 3127 22 0 13 chr1 19619281 19619653 -177575779 + IAPLTR1_Mm LTR ERVK 1 367 0 1 734 2704 32 0 3 chr1 19620178 19620517 -177574915 - L1_Mus1 LINE L1 -230 6337 6000 1 734 2118 58 0 0 chr1 19620517 19620776 -177574656 + L1_Mus1 LINE L1 6307 6565 -2 1 734 289 347 19 83 chr1 19620813 19620970 -177574462 - ORR1E LTR MaLR -210 149 3 1 734 195 222 0 0 chr1 19621323 19621368 -177574064 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 734 844 353 40 29 chr1 19622046 19622393 -177573039 - MLT2B2 LTR ERVL -162 353 3 1 734 193 312 43 11 chr1 19622757 19622851 -177572581 - MIRb SINE MIR -108 160 64 1 734 411 304 3 124 chr1 19622865 19623077 -177572355 - B3 SINE B2 -9 184 1 1 734 455 259 52 124 chr1 19623119 19623313 -177572119 - B3A SINE B2 -16 182 3 1 734 299 203 0 13 chr1 19626146 19626221 -177569211 + C-rich Low_complexity Low_complexity 6 79 0 1 734 1704 140 25 37 chr1 19626733 19627059 -177568373 + RLTRETN_Mm LTR ERVK 1 322 0 1 734 4938 57 5 0 chr1 19627394 19628014 -177567418 - L1Md_F3 LINE L1 -14 6570 5948 1 734 994 53 0 0 chr1 19628014 19628146 -177567286 + L1_Mm LINE L1 2891 3022 -2861 1 734 641 318 68 27 chr1 19628245 19628610 -177566822 + Lx9 LINE L1 7082 7461 -183 1 734 21 71 0 0 chr1 19628745 19628787 -177566645 + AT_rich Low_complexity Low_complexity 1 42 0 1 734 186 43 0 0 chr1 19628901 19628924 -177566508 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 734 358 180 22 11 chr1 19630080 19630170 -177565262 + C-rich Low_complexity Low_complexity 2 92 0 1 734 785 233 57 0 chr1 19630874 19631067 -177564365 - B3 SINE B2 -8 208 5 1 734 426 53 0 0 chr1 19631071 19631128 -177564304 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 734 544 313 98 39 chr1 19631442 19631645 -177563787 + B4A SINE B4 39 253 -39 1 734 369 0 0 0 chr1 19631688 19631729 -177563703 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 734 234 0 0 0 chr1 19631729 19631754 -177563678 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 734 411 92 0 0 chr1 19633276 19633341 -177562091 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 734 21 0 0 0 chr1 19633679 19633700 -177561732 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 337 314 39 83 chr1 19634032 19634237 -177561195 - L1MC LINE L1 -2427 5455 5260 1 734 423 0 0 0 chr1 19634291 19634338 -177561094 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 734 716 285 51 18 chr1 19635432 19635768 -177559664 - L1M4 LINE L1 -1156 4990 4644 1 734 1076 219 4 22 chr1 19636143 19636372 -177559060 + URR1B DNA MER1_type 1 225 0 1 734 1796 94 16 0 chr1 19636949 19637246 -177558186 + L1_Mus2 LINE L1 6300 6566 0 1 734 793 266 70 10 chr1 19637412 19637712 -177557720 - MER33 DNA MER1_type -1 323 6 1 734 499 325 38 69 chr1 19639088 19639312 -177556120 - MLT1C LTR MaLR 0 467 268 1 734 309 307 0 45 chr1 19639377 19639510 -177555922 + L1M2 LINE L1 5440 5566 -725 1 734 288 256 0 0 chr1 19639537 19639615 -177555817 + Lx9 LINE L1 7404 7481 -163 1 734 22 0 0 0 chr1 19639734 19639756 -177555676 + AT_rich Low_complexity Low_complexity 1 22 0 2 734 369 244 0 56 chr1 19639757 19639883 -177555549 + L1M2 LINE L1 5603 5721 -579 1 734 285 131 0 0 chr1 19640083 19640144 -177555288 + (A)n Simple_repeat Simple_repeat 1 61 0 2 734 381 165 60 19 chr1 19640620 19640736 -177554696 - Lx4A LINE L1 0 7058 6924 2 734 1760 106 85 20 chr1 19641581 19641889 -177553543 + IAPEY_LTR LTR ERVK 53 405 -6 2 734 1041 227 0 0 chr1 19641961 19642186 -177553246 + URR1B DNA MER1_type 1 225 0 2 734 6932 104 46 0 chr1 19642331 19643771 -177551661 + L1VL1 LINE L1 1 1326 -2372 2 734 3514 87 12 11 chr1 19643769 19644337 -177551095 + L1VL1 LINE L1 2632 3200 -498 2 734 3655 95 0 0 chr1 19644342 19644826 -177550606 + L1_Mus1 LINE L1 6083 6566 -1 2 734 424 338 35 82 chr1 19645330 19645501 -177549931 - RSINE1 SINE B4 0 165 3 2 734 1667 146 3 7 chr1 19646222 19646512 -177548920 + L1VL1 LINE L1 1 289 -6133 2 734 4696 81 0 29 chr1 19646514 19647510 -177547922 + L1Md_A LINE L1 936 1889 -3994 2 734 207 108 0 26 chr1 19647525 19647563 -177547869 + (TAA)n Simple_repeat Simple_repeat 3 39 0 2 734 207 271 0 54 chr1 19647821 19647895 -177547537 + GA-rich Low_complexity Low_complexity 5 74 0 2 734 325 325 33 50 chr1 19648832 19648952 -177546480 + MLT1G3 LTR MaLR 399 516 -79 2 734 429 356 28 28 chr1 19650133 19650387 -177545045 - MLT1D LTR MaLR -8 497 244 2 734 22 0 0 0 chr1 19650632 19650654 -177544778 + AT_rich Low_complexity Low_complexity 1 22 0 2 734 563 301 6 6 chr1 19652345 19652522 -177542910 - B3A SINE B2 -18 180 4 2 734 543 274 34 136 chr1 19652625 19652861 -177542571 + MTEa LTR MaLR 166 377 -2 2 734 25 0 0 0 chr1 19653257 19653282 -177542150 + AT_rich Low_complexity Low_complexity 1 25 0 2 734 865 231 28 0 chr1 19653670 19653852 -177541580 + B3 SINE B2 3 189 -27 2 734 426 278 178 0 chr1 19654397 19654577 -177540855 - ID_B1 SINE B4 -10 214 3 2 734 588 121 0 0 chr1 19655703 19655794 -177539638 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 734 837 314 52 22 chr1 19656400 19656691 -177538741 + Lx8 LINE L1 6923 7227 -246 2 734 306 0 0 0 chr1 19656691 19656725 -177538707 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 734 837 314 52 22 chr1 19656725 19656801 -177538631 + Lx8 LINE L1 7228 7301 -172 2 734 234 0 0 0 chr1 19656806 19656832 -177538600 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 734 2149 188 48 15 chr1 19656875 19657335 -177538097 - Lx5 LINE L1 0 7050 6576 2 734 25 0 0 0 chr1 19657489 19657514 -177537918 + AT_rich Low_complexity Low_complexity 1 25 0 2 734 300 91 0 0 chr1 19658676 19658720 -177536712 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 734 1977 245 48 14 chr1 19659327 19659823 -177535609 - Lx5 LINE L1 0 7050 6538 2 91 1947 61 0 8 chr1 19660648 19660913 -177534519 - L1_Mus1 LINE L1 -348 5535 5273 2 735 7435 65 1 0 chr1 19660929 19661957 -177533475 + L1_Mus1 LINE L1 5538 6566 -1 2 735 25 31 0 0 chr1 19661958 19661990 -177533442 + AT_rich Low_complexity Low_complexity 1 32 0 2 735 211 233 63 76 chr1 19662541 19662620 -177532812 + MIRb SINE MIR 111 188 -80 2 735 657 101 0 0 chr1 19662920 19663019 -177532413 + (TC)n Simple_repeat Simple_repeat 1 99 0 2 735 1636 46 50 5 chr1 19665140 19665359 -177530073 - L1_Mus2 LINE L1 0 6566 6338 2 735 333 275 29 0 chr1 19665602 19665773 -177529659 + (TA)n Simple_repeat Simple_repeat 1 176 0 2 735 393 153 0 0 chr1 19665785 19665857 -177529575 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 735 749 306 68 70 chr1 19665983 19666429 -177529003 + RMER1B Other Other 43 794 -548 2 735 636 337 53 59 chr1 19667562 19667902 -177527530 + MLT1A0 LTR MaLR 1 338 -27 2 735 1665 190 58 28 chr1 19669070 19669243 -177526189 + ORR1D1 LTR MaLR 1 164 -210 2 735 753 106 0 0 chr1 19669243 19669356 -177526076 + (TC)n Simple_repeat Simple_repeat 2 114 0 2 735 1665 190 58 28 chr1 19669356 19669545 -177525887 + ORR1D1 LTR MaLR 165 374 0 2 735 191 336 95 22 chr1 19669584 19669721 -177525711 + L2a LINE L2 3276 3422 -4 2 735 45 34 0 0 chr1 19669807 19669866 -177525566 + AT_rich Low_complexity Low_complexity 1 59 0 2 735 1034 161 0 0 chr1 19669880 19670041 -177525391 - B2_Mm2 SINE B2 -33 162 2 2 735 681 195 123 39 chr1 19670876 19671031 -177524401 + B3 SINE B2 1 168 -48 2 735 963 219 43 0 chr1 19672312 19672522 -177522910 + URR1A DNA MER1_type 8 226 0 2 735 376 321 30 24 chr1 19672373 19672539 -177522893 - CYRA11_Mm Unknown Y-chromosome -296 321 155 2 735 401 357 13 19 chr1 19673122 19673279 -177522153 + Lx8 LINE L1 7172 7327 -146 2 735 687 177 0 0 chr1 19673363 19673493 -177521939 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 735 234 347 61 10 chr1 19673615 19673714 -177521718 - MIR SINE MIR -60 148 45 2 735 386 241 66 29 chr1 19675080 19675214 -177520218 + MER20 DNA MER1_type 59 197 -22 2 735 39 60 0 0 chr1 19676048 19676115 -177519317 + AT_rich Low_complexity Low_complexity 1 67 0 2 735 189 0 0 0 chr1 19676745 19676766 -177518666 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 735 186 103 0 0 chr1 19676998 19677027 -177518405 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 735 39493 4 0 0 chr1 19677255 19683632 -177511800 - L1Md_A LINE L1 0 6582 205 2 735 607 311 44 20 chr1 19683808 19684011 -177511421 - MER20 DNA MER1_type -6 213 6 2 735 203 377 16 32 chr1 19684065 19684191 -177511241 - L2c LINE L2 0 3387 3264 2 735 1270 88 12 3 chr1 19684818 19685150 -177510282 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 2 735 254 109 43 0 chr1 19685152 19685198 -177510234 + GA-rich Low_complexity Low_complexity 3 50 0 2 735 180 292 0 0 chr1 19685793 19685906 -177509526 + (TG)n Simple_repeat Simple_repeat 1 113 0 2 735 305 326 32 102 chr1 19687014 19687260 -177508172 - L1MD LINE L1 -681 5678 5450 2 735 324 329 20 7 chr1 19687786 19687933 -177507499 - B1F SINE Alu 0 149 1 2 735 715 328 114 16 chr1 19688542 19688849 -177506583 + ORR1E LTR MaLR 18 354 -5 2 735 414 0 0 0 chr1 19689650 19689696 -177505736 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 735 23 0 0 0 chr1 19691356 19691379 -177504053 + AT_rich Low_complexity Low_complexity 1 23 0 2 735 22 0 0 0 chr1 19692098 19692120 -177503312 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 899 301 122 55 chr1 19693071 19693529 -177501903 + LTR48 LTR ERV1 1 557 -230 2 735 2592 93 61 0 chr1 19693529 19693906 -177501526 - MTB LTR MaLR 0 400 1 2 735 899 280 102 72 chr1 19693906 19693962 -177501470 + LTR48 LTR ERV1 558 605 -182 2 735 1256 130 16 0 chr1 19693962 19694154 -177501278 + B2_Mm2 SINE B2 1 195 0 2 735 899 280 102 72 chr1 19694154 19694326 -177501106 + LTR48 LTR ERV1 606 772 -15 2 735 622 276 35 5 chr1 19695638 19695838 -177499594 + B3 SINE B2 2 207 -9 2 735 21 36 0 0 chr1 19695851 19695879 -177499553 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 1113 241 98 32 chr1 19696260 19696607 -177498825 + ORR1D2 LTR MaLR 1 370 0 2 735 30566 83 11 4 chr1 19696972 19702307 -177493125 + L1Md_F2 LINE L1 118 5589 -297 2 735 8013 54 2 0 chr1 19702307 19703301 -177492131 + L1Md_F2 LINE L1 5590 6585 0 2 735 1215 186 172 58 chr1 19703315 19703628 -177491804 + ORR1B2 LTR MaLR 12 360 -7 2 735 286 327 38 86 chr1 19703918 19704171 -177491261 + ORR1E LTR MaLR 121 371 -8 2 735 28 29 0 0 chr1 19704415 19704450 -177490982 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 228 215 94 71 chr1 19704819 19704904 -177490528 - L2a LINE L2 -61 3365 3279 2 735 337 250 22 11 chr1 19706770 19706859 -177488573 + MLT1A1 LTR MaLR 311 400 -8 2 735 2913 116 35 47 chr1 19707290 19707804 -177487628 - Lx LINE L1 0 6654 6147 2 735 3792 119 4 4 chr1 19707804 19708532 -177486900 + Lx LINE L1 5433 6161 -493 2 735 540 30 0 0 chr1 19709193 19709259 -177486173 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 735 21 36 0 0 chr1 19709696 19709724 -177485708 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 23 0 0 0 chr1 19710218 19710241 -177485191 + AT_rich Low_complexity Low_complexity 1 23 0 2 735 693 160 0 0 chr1 19710388 19710507 -177484925 + RMER6A LTR ERVK 95 213 -543 2 735 31644 72 8 6 chr1 19710507 19712635 -177482797 - L1Md_F2 LINE L1 -3 6579 4429 2 735 1089 76 14 0 chr1 19712635 19712780 -177482652 - B1_Mus2 SINE Alu 0 147 1 2 735 31644 88 19 8 chr1 19712780 19716803 -177478629 - L1Md_F2 LINE L1 -1455 4428 380 2 735 423 342 87 26 chr1 19717318 19717582 -177477850 - MLT1C LTR MaLR 0 467 188 2 735 561 280 48 57 chr1 19717677 19717998 -177477434 + RMER1B Other Other 593 851 -215 2 735 2403 261 97 24 chr1 19718073 19718839 -177476593 + RMER1C Other Other 516 1337 -5 2 735 4801 223 26 14 chr1 19719433 19720565 -177474867 + Lx5 LINE L1 5905 7050 0 2 735 3957 200 82 14 chr1 19720879 19721718 -177473714 + MTB_Mm-int LTR MaLR 363 1258 0 2 735 2163 171 38 20 chr1 19721718 19722118 -177473314 + MTB_Mm LTR MaLR 1 407 0 2 735 393 104 39 0 chr1 19722178 19722255 -177473177 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2 735 387 262 11 67 chr1 19722256 19722346 -177473086 - B1_Mur3 SINE Alu -63 86 1 2 735 21 0 0 0 chr1 19722913 19722934 -177472498 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 209 297 134 8 chr1 19723536 19723655 -177471777 + L2 LINE L2 2891 3024 -395 2 735 612 243 59 0 chr1 19723932 19724068 -177471364 - B1_Mur4 SINE Alu 0 150 7 2 735 264 286 61 81 chr1 19724129 19724228 -177471204 - MLT1A0 LTR MaLR -4 361 265 2 735 2819 63 8 0 chr1 19724763 19725128 -177470304 + L1_Mus1 LINE L1 6200 6567 0 2 735 562 67 44 0 chr1 19725752 19725842 -177469590 + (TATG)n Simple_repeat Simple_repeat 2 95 0 2 735 285 29 0 0 chr1 19725913 19725947 -177469485 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 735 220 224 0 0 chr1 19726058 19726107 -177469325 + A-rich Low_complexity Low_complexity 1 49 0 2 735 31 76 0 0 chr1 19726181 19726247 -177469185 + AT_rich Low_complexity Low_complexity 1 66 0 2 735 484 341 23 8 chr1 19728579 19728712 -177466720 + RSINE1 SINE B4 15 149 -16 2 735 287 115 33 0 chr1 19728727 19728788 -177466644 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 2 735 261 0 0 0 chr1 19728971 19729000 -177466432 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 735 468 66 0 0 chr1 19729000 19729061 -177466371 - B1_Mus2 SINE Alu -8 139 79 3 735 790 269 69 5 chr1 19729578 19729780 -177465652 - B3 SINE B2 0 216 2 3 735 329 334 113 28 chr1 19729951 19730339 -177465093 - Lx8 LINE L1 -143 7330 6910 3 735 277 292 135 0 chr1 19730885 19730981 -177464451 + MIR3 SINE MIR 85 193 -15 3 735 459 355 43 24 chr1 19732255 19732509 -177462923 - LTR16E2 LTR ERVL -15 553 295 3 735 228 296 14 14 chr1 19732999 19733071 -177462361 - MER63D DNA AcHobo -684 377 306 3 735 209 368 82 14 chr1 19733182 19733328 -177462104 + MIR SINE MIR 5 160 -102 3 735 627 14 0 0 chr1 19733600 19733672 -177461760 + (TTTCC)n Simple_repeat Simple_repeat 3 74 0 3 735 1142 226 63 37 chr1 19733856 19734206 -177461226 - Lx6 LINE L1 -353 7107 6749 3 735 2023 217 9 32 chr1 19734203 19734907 -177460525 - Lx6 LINE L1 -1303 6157 5474 3 735 1666 137 14 4 chr1 19734945 19735223 -177460209 - L1_Mus4 LINE L1 -2 6634 6354 3 735 2695 91 0 0 chr1 19735225 19735609 -177459823 + L1_Mus4 LINE L1 5935 6318 -318 3 735 6566 134 20 0 chr1 19735609 19736996 -177458436 - Lx LINE L1 -4 6650 5235 3 735 295 292 26 0 chr1 19737394 19737507 -177457925 + L1Md_F LINE L1 600 715 -5804 3 735 2680 141 4 16 chr1 19737507 19738361 -177457071 + L1Md_F LINE L1 628 1476 -2341 3 735 2814 146 68 4 chr1 19738563 19739059 -177456373 - RLTR11A LTR ERVK 0 528 1 3 735 22 70 0 0 chr1 19739744 19739787 -177455645 + AT_rich Low_complexity Low_complexity 1 43 0 3 735 351 230 230 26 chr1 19739801 19739953 -177455479 - B3A SINE B2 -15 183 1 3 735 543 49 0 89 chr1 19740243 19740333 -177455099 + L1_Mus2 LINE L1 6479 6560 -6 3 735 456 19 0 0 chr1 19740333 19740386 -177455046 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 3 735 189 0 0 0 chr1 19741417 19741438 -177453994 + (T)n Simple_repeat Simple_repeat 1 21 0 3 735 219 88 0 0 chr1 19741539 19741573 -177453859 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 735 436 212 82 0 chr1 19741577 19741686 -177453746 - MLT2B2 LTR ERVL -20 534 414 3 735 247 280 120 144 chr1 19741985 19742152 -177453280 - RSINE1 SINE B4 0 165 3 3 735 260 329 0 0 chr1 19742169 19742239 -177453193 - tRNA-Asn-AAC tRNA tRNA -6 71 2 3 735 264 222 0 0 chr1 19743118 19743181 -177452251 - Lx7 LINE L1 -384 7312 7250 3 735 304 318 42 76 chr1 19743718 19743837 -177451595 - PB1D10 SINE Alu -2 115 1 3 735 237 318 93 49 chr1 19744162 19744324 -177451108 + MARNA DNA Mariner 15 183 -403 3 735 666 52 0 15 chr1 19744354 19744458 -177450974 - B1_Mus2 SINE Alu 0 150 51 3 735 363 314 32 16 chr1 19744441 19744567 -177450865 - MARNA DNA Mariner -208 378 251 3 735 342 0 0 0 chr1 19744794 19744832 -177450600 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 735 233 281 84 76 chr1 19745277 19745408 -177450024 + MLT1A1 LTR MaLR 1 132 -276 3 735 216 0 0 0 chr1 19746428 19746452 -177448980 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 3 735 849 271 10 5 chr1 19747406 19747614 -177447818 + B3 SINE B2 3 211 -5 3 735 249 339 179 21 chr1 19748831 19749066 -177446366 + L4 LINE RTE 178 449 -1580 3 735 664 201 14 54 chr1 19749090 19749237 -177446195 + B1_Mus2 SINE Alu 2 142 -5 3 735 195 42 0 0 chr1 19749237 19749261 -177446171 + (CCAA)n Simple_repeat Simple_repeat 1 24 0 3 735 327 345 87 23 chr1 19751005 19751177 -177444255 + B3A SINE B2 2 184 -14 3 735 213 121 0 0 chr1 19751295 19751328 -177444104 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 735 381 22 0 0 chr1 19751328 19751374 -177444058 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 735 536 351 103 0 chr1 19751385 19751755 -177443677 - Lx9 LINE L1 -186 7458 7051 3 735 24 0 0 0 chr1 19752901 19752925 -177442507 + AT_rich Low_complexity Low_complexity 1 24 0 3 735 453 206 18 48 chr1 19753119 19753287 -177442145 + RMER17C LTR ERVK 112 274 -136 3 735 895 157 225 0 chr1 19753805 19754041 -177441391 + Lx2 LINE L1 6692 6980 -17 3 735 412 304 43 14 chr1 19754493 19754633 -177440799 - MER5A1 DNA MER1_type -6 160 17 3 735 605 259 75 12 chr1 19754661 19754821 -177440611 + MER5A DNA MER1_type 7 176 -13 3 735 393 333 81 6 chr1 19755465 19755625 -177439807 + MTEa LTR MaLR 6 177 -202 3 735 570 307 78 0 chr1 19755811 19756003 -177439429 + ID_B1 SINE B4 17 223 -1 3 735 221 250 0 0 chr1 19756026 19756086 -177439346 + A-rich Low_complexity Low_complexity 2 61 0 3 735 32 75 0 0 chr1 19756202 19756269 -177439163 + AT_rich Low_complexity Low_complexity 1 67 0 3 735 396 175 8 16 chr1 19756884 19757012 -177438420 + (TATG)n Simple_repeat Simple_repeat 3 129 0 3 735 905 212 86 23 chr1 19757243 19757499 -177437933 - Lx5 LINE L1 -8 7042 6771 3 735 204 67 0 0 chr1 19758291 19758321 -177437111 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 735 277 214 9 28 chr1 19759224 19759330 -177436102 + (CAA)n Simple_repeat Simple_repeat 2 105 0 3 735 21 0 0 0 chr1 19761457 19761478 -177433954 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 531 45 0 0 chr1 19765324 19765390 -177430042 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 735 21 0 0 0 chr1 19765502 19765523 -177429909 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 206 393 61 44 chr1 19765960 19766141 -177429291 + L4 LINE RTE 1145 1328 -701 3 735 333 296 135 25 chr1 19766742 19766905 -177428527 - Tigger9b DNA MER2_type -426 198 18 3 735 183 334 2 24 chr1 19767961 19768044 -177427388 - MIRc SINE MIR -87 175 95 3 735 984 47 0 0 chr1 19768495 19768623 -177426809 - L1_Mm LINE L1 -1577 4306 4179 3 735 4626 78 39 41 chr1 19768623 19769320 -177426112 + L1Md_F2 LINE L1 5901 6582 0 3 735 266 67 0 22 chr1 19769689 19769735 -177425697 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 3 735 270 0 0 0 chr1 19770148 19770178 -177425254 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 735 1916 199 78 28 chr1 19770600 19770938 -177424494 - RLTR11A2 LTR ERVK 0 527 180 3 735 225 0 0 0 chr1 19770938 19770963 -177424469 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 735 1916 199 78 28 chr1 19770963 19771126 -177424306 - RLTR11A2 LTR ERVK -348 179 3 3 735 212 264 0 36 chr1 19771555 19771610 -177423822 + MIR SINE MIR 94 146 -116 3 735 222 37 0 0 chr1 19773080 19773107 -177422325 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 735 1292 101 17 0 chr1 19773107 19773285 -177422147 - B2_Mm2 SINE B2 -14 181 1 3 735 195 42 0 0 chr1 19773288 19773312 -177422120 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 735 759 169 0 58 chr1 19773324 19773462 -177421970 - B2_Mm2 SINE B2 -55 140 11 3 735 405 0 0 0 chr1 19773971 19774016 -177421416 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 735 183 340 31 31 chr1 19774118 19774215 -177421217 - L2c LINE L2 -51 3336 3240 3 735 430 259 140 53 chr1 19774595 19774823 -177420609 + Lx8 LINE L1 7047 7294 -179 3 735 524 271 42 21 chr1 19775056 19775199 -177420233 + MLT1A1 LTR MaLR 247 392 -16 3 735 307 356 50 8 chr1 19779265 19779384 -177416048 + Lx8 LINE L1 7165 7288 -185 3 735 282 138 0 0 chr1 19779395 19779453 -177415979 + (T)n Simple_repeat Simple_repeat 1 58 0 3 735 414 236 71 31 chr1 19779832 19779959 -177415473 + MIR SINE MIR 74 205 -57 3 735 1054 111 0 22 chr1 19780360 19780544 -177414888 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 735 761 229 22 6 chr1 19780585 19780765 -177414667 - Lx5 LINE L1 -12 7038 6856 3 735 697 82 0 0 chr1 19781051 19781149 -177414283 - L1_Mus2 LINE L1 -438 6128 6031 3 735 2774 78 140 0 chr1 19781150 19781550 -177413882 + L1_Mus2 LINE L1 6111 6566 0 3 735 401 299 113 9 chr1 19781720 19781949 -177413483 + L1MA6 LINE L1 6014 6266 -34 3 735 201 186 23 0 chr1 19781972 19782015 -177413417 + GA-rich Low_complexity Low_complexity 2 45 0 3 735 548 331 19 13 chr1 19782054 19782213 -177413219 + ID_B1 SINE B4 3 162 -62 3 735 187 385 58 58 chr1 19782321 19782511 -177412921 - MIR SINE MIR -28 234 45 3 735 360 364 120 46 chr1 19782798 19783149 -177412283 - LTR33 LTR ERVL -138 377 1 3 735 497 30 15 0 chr1 19784048 19784115 -177411317 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 735 249 57 0 0 chr1 19784850 19784885 -177410547 + (A)n Simple_repeat Simple_repeat 1 35 0 3 735 834 30 0 0 chr1 19785578 19785679 -177409753 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 735 261 0 0 0 chr1 19787389 19787418 -177408014 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 3 735 363 210 19 39 chr1 19788064 19788168 -177407264 + ORR1D2 LTR MaLR 267 368 -2 3 735 569 191 8 15 chr1 19788174 19788307 -177407125 + Lx4A LINE L1 6915 7046 -12 3 735 292 264 205 16 chr1 19788422 19788832 -177406600 + L1_Mur3 LINE L1 5093 5589 -714 3 735 1125 65 0 7 chr1 19788923 19789077 -177406355 + L1_Mus1 LINE L1 6415 6567 0 3 735 228 67 0 0 chr1 19789082 19789112 -177406320 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 735 1109 57 14 0 chr1 19789260 19789401 -177406031 + B1_Mus1 SINE Alu 1 143 -5 3 735 5576 156 24 31 chr1 19789408 19790520 -177404912 + L1Md_T LINE L1 101 1205 -5411 3 91 36075 35 0 0 chr1 19790526 19794942 -177400490 + L1Md_T LINE L1 1170 5586 -297 3 736 7915 56 3 0 chr1 19794942 19795932 -177399500 + L1Md_T LINE L1 5587 6579 -3 3 736 210 91 0 0 chr1 19796160 19796193 -177399239 + (A)n Simple_repeat Simple_repeat 1 33 0 3 736 258 32 0 0 chr1 19796195 19796226 -177399206 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 3 736 1036 63 17 107 chr1 19796483 19796660 -177398772 + L1_Mus2 LINE L1 6406 6566 0 3 736 788 200 0 6 chr1 19797604 19797780 -177397652 + CT-rich Low_complexity Low_complexity 3 177 0 3 736 544 221 88 0 chr1 19797782 19797918 -177397514 - B1_Mur1 SINE Alu -1 148 1 3 736 183 129 0 0 chr1 19801343 19801374 -177394058 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 736 236 292 15 0 chr1 19801626 19801691 -177393741 + L1MEd LINE L1 419 484 -5635 4 736 711 241 24 114 chr1 19801928 19802076 -177393356 + B3 SINE B2 2 149 -67 4 736 270 0 0 0 chr1 19802076 19802106 -177393326 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 736 512 241 24 114 chr1 19802106 19802168 -177393264 + B2_Mm2 SINE B2 134 193 -2 4 736 205 128 0 41 chr1 19802170 19802219 -177393213 + A-rich Low_complexity Low_complexity 4 50 0 4 736 530 271 22 67 chr1 19802503 19802681 -177392751 + B3 SINE B2 47 216 0 4 736 506 210 77 77 chr1 19803703 19803858 -177391574 - RSINE1 SINE B4 0 165 11 4 736 486 0 0 0 chr1 19804044 19804098 -177391334 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 4 736 323 346 167 19 chr1 19804174 19804336 -177391096 + MER5A DNA MER1_type 4 189 0 4 736 237 262 75 28 chr1 19804375 19804481 -177390951 + MER5A1 DNA MER1_type 56 166 0 4 736 293 279 11 34 chr1 19804543 19804632 -177390800 + RSINE1 SINE B4 1 87 -78 4 736 512 289 70 90 chr1 19804624 19804924 -177390508 + MTE2a LTR MaLR 74 367 -12 4 736 381 273 14 115 chr1 19804964 19805252 -177390180 + L1VL1 LINE L1 45 485 -5933 4 736 437 234 73 37 chr1 19805275 19805439 -177389993 + L1_Mus1 LINE L1 675 844 -5772 4 736 930 230 18 0 chr1 19805409 19805635 -177389797 + L1_Mus1 LINE L1 725 954 -5662 4 736 2466 68 3 0 chr1 19805630 19805955 -177389477 - L1Md_F2 LINE L1 -1614 4269 3944 4 736 6702 75 7 82 chr1 19805953 19807021 -177388411 + L1Md_F2 LINE L1 4376 5362 -521 4 736 3391 110 41 28 chr1 19807021 19807370 -177388062 + ORR1A1-int LTR MaLR 502 868 -924 4 736 5737 100 25 21 chr1 19807370 19808216 -177387216 + L1Md_F2 LINE L1 5721 6569 -13 4 736 3391 90 28 17 chr1 19808216 19808573 -177386859 + ORR1A1-int LTR MaLR 869 1118 -674 4 736 29785 111 8 8 chr1 19808573 19813917 -177381515 + L1_Mus1 LINE L1 1223 6567 0 4 736 743 91 4 0 chr1 19814643 19814751 -177380681 - Lx3B LINE L1 -443 6533 6423 4 736 2913 117 24 22 chr1 19814752 19815214 -177380218 + Lx3B LINE L1 6502 6964 -9 4 736 293 0 0 26 chr1 19815214 19815252 -177380180 + (TAA)n Simple_repeat Simple_repeat 2 38 0 4 736 490 313 20 0 chr1 19815478 19815625 -177379807 - B3A SINE B2 -46 152 3 4 736 207 69 0 0 chr1 19815847 19815876 -177379556 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 736 301 336 18 0 chr1 19815900 19816013 -177379419 - PB1D10 SINE Alu 0 117 3 4 736 23 33 0 0 chr1 19816394 19816424 -177379008 + AT_rich Low_complexity Low_complexity 1 30 0 4 736 180 0 0 0 chr1 19817340 19817360 -177378072 + (A)n Simple_repeat Simple_repeat 1 20 0 4 736 183 156 0 0 chr1 19817416 19817448 -177377984 + CT-rich Low_complexity Low_complexity 1 32 0 4 736 249 128 0 0 chr1 19818179 19818226 -177377206 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 736 198 36 69 35 chr1 19818479 19818537 -177376895 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 4 736 506 130 9 0 chr1 19819091 19819199 -177376233 + (TAGA)n Simple_repeat Simple_repeat 3 111 0 4 736 501 211 114 127 chr1 19819531 19819872 -177375560 - L1_Mur3 LINE L1 -1493 4647 4269 4 736 441 0 0 0 chr1 19819872 19819921 -177375511 + (T)n Simple_repeat Simple_repeat 1 49 0 4 736 352 267 109 24 chr1 19819923 19820088 -177375344 - L1_Mur3 LINE L1 -1644 4233 4055 4 736 815 233 23 47 chr1 19820250 19820507 -177374925 + Lx9 LINE L1 4952 5202 -645 4 736 3157 284 79 57 chr1 19820588 19822694 -177372738 + Lx9 LINE L1 5175 7493 -151 4 736 216 127 0 60 chr1 19822702 19822727 -177372705 + (TCTCTG)n Simple_repeat Simple_repeat 6 28 0 4 736 312 70 0 0 chr1 19822727 19822770 -177372662 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 736 216 127 0 60 chr1 19822770 19822811 -177372621 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 4 736 402 69 0 0 chr1 19822822 19822880 -177372552 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 736 252 206 0 0 chr1 19822917 19822980 -177372452 + Lx9 LINE L1 7573 7635 -9 4 736 402 380 53 25 chr1 19823678 19823959 -177371473 - MLT1D LTR MaLR -7 498 210 4 736 2509 27 0 0 chr1 19823964 19824260 -177371172 + L1Md_A LINE L1 6287 6582 0 4 736 1161 117 37 5 chr1 19825631 19825820 -177369612 - B2_Mm2 SINE B2 0 195 1 4 736 312 244 26 0 chr1 19825860 19825938 -177369494 - L1MA4 LINE L1 -373 5927 5848 4 736 222 37 0 0 chr1 19826861 19826888 -177368544 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 736 5618 121 100 10 chr1 19827472 19828899 -177366533 - L1_Mus3 LINE L1 -5 6633 5068 4 736 31005 13 1 5 chr1 19828961 19834788 -177360644 + L1Md_A LINE L1 1 5586 -297 4 736 8864 12 0 0 chr1 19834788 19835784 -177359648 + L1Md_A LINE L1 5587 6582 0 4 736 366 23 0 0 chr1 19836163 19836206 -177359226 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 736 29 28 0 0 chr1 19836497 19836533 -177358899 + AT_rich Low_complexity Low_complexity 1 36 0 4 736 249 349 54 8 chr1 19837207 19837337 -177358095 - MER20B DNA MER1_type -647 136 1 4 736 1131 238 62 29 chr1 19838495 19838802 -177356630 - Lx9 LINE L1 -252 7392 7076 4 736 490 254 6 0 chr1 19838794 19838959 -177356473 + Lx9 LINE L1 7478 7643 -1 4 736 645 303 93 84 chr1 19839347 19839690 -177355742 + ORR1E LTR MaLR 10 355 -4 4 736 321 298 95 17 chr1 19841054 19841170 -177354262 - B1F2 SINE Alu -19 128 4 4 736 240 361 82 37 chr1 19841170 19841185 -177354247 - ID_B1 SINE B4 -14 206 70 4 736 23 33 0 0 chr1 19841270 19841300 -177354132 + AT_rich Low_complexity Low_complexity 1 30 0 4 736 183 233 51 76 chr1 19842981 19843060 -177352372 - L2c LINE L2 -36 3351 3275 4 736 530 247 18 49 chr1 19843342 19843532 -177351900 - MTE2b LTR MaLR -1 378 182 4 736 1816 224 39 19 chr1 19844271 19844918 -177350514 + Lx7 LINE L1 5493 6150 -1546 4 736 477 0 0 0 chr1 19845051 19845104 -177350328 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 736 297 0 0 0 chr1 19845105 19845138 -177350294 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 736 2031 96 13 3 chr1 19845415 19845717 -177349715 + L1_Mus3 LINE L1 6328 6632 -6 4 736 789 249 96 71 chr1 19845910 19846052 -177349380 + RLTR25B LTR ERVK 741 889 -139 4 736 303 49 0 0 chr1 19846052 19846093 -177349339 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 736 522 46 0 0 chr1 19846093 19846157 -177349275 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 736 789 249 96 71 chr1 19846157 19846294 -177349138 + RLTR25B LTR ERVK 890 1027 -1 4 736 223 132 0 54 chr1 19846448 19846473 -177348959 + polypyrimidine Low_complexity Low_complexity 35 58 0 4 736 955 112 6 6 chr1 19846473 19846653 -177348779 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 736 223 132 0 54 chr1 19846653 19846683 -177348749 + polypyrimidine Low_complexity Low_complexity 6 34 0 4 736 1564 53 14 0 chr1 19848349 19848557 -177346875 + L1_Mus1 LINE L1 6357 6567 0 4 736 4227 41 2 15 chr1 19850638 19851163 -177344269 - L1Md_F3 LINE L1 0 6584 6067 4 736 192 389 66 11 chr1 19851778 19851869 -177343563 + MIR SINE MIR 31 126 -136 4 736 218 109 43 0 chr1 19852152 19852198 -177343234 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 736 297 0 0 0 chr1 19853460 19853493 -177341939 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 736 873 0 0 0 chr1 19854690 19854787 -177340645 + (GAA)n Simple_repeat Simple_repeat 3 99 0 4 736 207 287 85 0 chr1 19855124 19855218 -177340214 - L2a LINE L2 -109 3317 3216 4 736 211 231 0 0 chr1 19855282 19855321 -177340111 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 4 736 625 102 9 9 chr1 19855894 19856003 -177339429 + (CA)n Simple_repeat Simple_repeat 1 109 0 4 736 28 0 0 0 chr1 19857254 19857282 -177338150 + AT_rich Low_complexity Low_complexity 1 28 0 4 736 377 15 29 44 chr1 19860924 19860992 -177334440 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 4 736 3474 146 33 15 chr1 19861099 19861712 -177333720 - Lx3B LINE L1 -2 6971 6348 4 736 7244 68 18 6 chr1 19861739 19862698 -177332734 - L1_Mus1 LINE L1 0 6567 5598 4 736 3312 102 12 4 chr1 19862697 19863188 -177332244 + L1_Mus1 LINE L1 5039 5533 -350 4 736 22 0 0 0 chr1 19863325 19863347 -177332085 + AT_rich Low_complexity Low_complexity 1 22 0 4 736 235 335 142 19 chr1 19863633 19863788 -177331644 - MTEa LTR MaLR -3 376 203 4 736 203 171 0 0 chr1 19865625 19865666 -177329766 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 4 736 233 203 68 30 chr1 19865732 19865864 -177329568 + (ATATG)n Simple_repeat Simple_repeat 5 141 0 4 736 1094 66 0 0 chr1 19866333 19866470 -177328962 + B1_Mus2 SINE Alu 1 137 -10 4 736 1813 122 47 73 chr1 19866992 19867336 -177328096 + Lx LINE L1 6319 6653 -1 4 736 23 33 0 0 chr1 19868258 19868288 -177327144 + AT_rich Low_complexity Low_complexity 1 30 0 4 736 216 0 0 0 chr1 19871189 19871213 -177324219 + (A)n Simple_repeat Simple_repeat 1 24 0 4 736 29 28 0 0 chr1 19872051 19872087 -177323345 + AT_rich Low_complexity Low_complexity 1 36 0 4 736 265 359 7 71 chr1 19872233 19872374 -177323058 + B4A SINE B4 159 290 -2 4 736 452 168 0 10 chr1 19872384 19872486 -177322946 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 736 4397 115 20 62 chr1 19872819 19873128 -177322304 + L1_Mus3 LINE L1 5170 5443 -440 4 736 2062 47 4 0 chr1 19873128 19873383 -177322049 + L1Md_F2 LINE L1 6324 6579 -3 4 736 6927 86 69 10 chr1 19873383 19874497 -177320935 + L1_Mus3 LINE L1 5444 6633 -5 4 736 343 298 7 16 chr1 19874834 19874997 -177320435 - Lx7 LINE L1 -1787 5909 5715 4 736 718 178 6 6 chr1 19874998 19875162 -177320270 + (TA)n Simple_repeat Simple_repeat 1 164 0 4 736 306 346 64 12 chr1 19875174 19875415 -177320017 - L1_Mur3 LINE L1 -152 5728 5459 4 736 6094 39 28 1 chr1 19876139 19876902 -177318530 - L1Md_F3 LINE L1 0 6584 5802 4 736 1290 263 53 19 chr1 19876948 19877308 -177318124 - MTE2b LTR MaLR -2 377 6 4 736 443 303 71 24 chr1 19879027 19879196 -177316236 + MER20 DNA MER1_type 3 179 -40 4 736 444 37 0 0 chr1 19879982 19880036 -177315396 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 736 408 97 0 0 chr1 19880036 19880097 -177315335 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 736 612 40 0 0 chr1 19880166 19880241 -177315191 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 736 287 325 0 0 chr1 19880879 19880956 -177314476 - LFSINE_Vert SINE SINE -368 91 15 4 736 275 75 14 56 chr1 19882595 19882666 -177312766 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 4 736 940 90 8 0 chr1 19882666 19882800 -177312632 - B1_Mus1 SINE Alu 0 148 14 4 736 387 0 0 0 chr1 19883274 19883317 -177312115 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 736 306 0 0 0 chr1 19884096 19884130 -177311302 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 736 432 261 205 26 chr1 19884449 19884752 -177310680 - L1MA7 LINE L1 -380 5911 5555 5 736 639 220 22 43 chr1 19885302 19885440 -177309992 - B1_Mur1 SINE Alu -14 135 1 5 736 23 0 0 0 chr1 19885617 19885640 -177309792 + AT_rich Low_complexity Low_complexity 1 23 0 5 736 405 0 0 0 chr1 19886626 19886671 -177308761 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 736 225 318 12 12 chr1 19887896 19887982 -177307450 - MIRb SINE MIR -92 176 91 5 736 21 0 0 0 chr1 19888073 19888094 -177307338 + AT_rich Low_complexity Low_complexity 1 21 0 5 736 1147 203 13 18 chr1 19888747 19888973 -177306459 + URR1A DNA MER1_type 2 226 0 5 736 4826 103 9 1 chr1 19892754 19893506 -177301926 - L1_Mus3 LINE L1 0 6638 5928 5 736 2902 58 3 0 chr1 19893506 19893974 -177301458 + L1_Mus3 LINE L1 5455 5923 -643 5 736 275 104 0 20 chr1 19894127 19894176 -177301256 + (CAA)n Simple_repeat Simple_repeat 1 48 0 5 736 213 159 0 0 chr1 19894231 19894275 -177301157 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 736 245 158 0 34 chr1 19895073 19895132 -177300300 + (TTA)n Simple_repeat Simple_repeat 1 57 0 5 736 190 347 71 0 chr1 19895334 19895432 -177300000 - L2 LINE L2 -615 2804 2700 5 736 651 281 58 12 chr1 19896222 19896395 -177299037 - B3 SINE B2 -5 211 31 5 736 372 43 0 0 chr1 19897077 19897123 -177298309 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 736 183 42 0 0 chr1 19897123 19897147 -177298285 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 736 260 53 0 26 chr1 19897491 19897530 -177297902 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 736 533 332 72 30 chr1 19897570 19897971 -177297461 - Lx8 LINE L1 -7 7466 7049 5 736 375 113 0 0 chr1 19898544 19898606 -177296826 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 736 233 244 0 0 chr1 19898741 19898786 -177296646 - ID4_ SINE ID -1 82 38 5 736 342 308 227 0 chr1 19899818 19899990 -177295442 + B3 SINE B2 1 211 -5 5 736 184 235 0 0 chr1 19900952 19900986 -177294446 + MIR SINE MIR 108 141 -67 5 736 5596 71 0 9 chr1 19903861 19904603 -177290829 + L1Md_F2 LINE L1 5847 6581 -1 5 736 21 36 0 0 chr1 19904811 19904839 -177290593 + AT_rich Low_complexity Low_complexity 1 28 0 5 736 448 247 167 43 chr1 19904839 19905025 -177290407 - B3 SINE B2 0 216 8 5 736 612 181 101 43 chr1 19905503 19905642 -177289790 + B1_Mus2 SINE Alu 1 147 0 5 736 396 0 0 0 chr1 19905642 19905686 -177289746 + (GAA)n Simple_repeat Simple_repeat 1 44 0 5 736 794 136 47 0 chr1 19905686 19905855 -177289577 + GA-rich Low_complexity Low_complexity 4 180 0 5 736 843 109 0 20 chr1 19905819 19905969 -177289463 + (GAA)n Simple_repeat Simple_repeat 3 149 0 5 736 1223 48 0 0 chr1 19906096 19906243 -177289189 + B1_Mus2 SINE Alu 1 147 0 5 736 249 57 0 0 chr1 19906243 19906278 -177289154 + (A)n Simple_repeat Simple_repeat 1 35 0 5 736 625 271 101 90 chr1 19906618 19906906 -177288526 + B4 SINE B4 2 292 0 5 736 401 89 0 15 chr1 19906926 19906994 -177288438 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 736 2060 175 36 26 chr1 19907141 19907529 -177287903 + RLTR25A LTR ERVK 1 392 -711 5 736 2527 115 56 22 chr1 19907570 19907978 -177287454 - Lx LINE L1 -6 6648 6227 5 736 189 0 0 0 chr1 19908087 19908108 -177287324 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 736 567 0 0 0 chr1 19908108 19908170 -177287262 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 736 414 181 0 0 chr1 19908172 19908244 -177287188 + RLTR25A LTR ERVK 1030 1101 -2 5 736 207 0 0 0 chr1 19908761 19908784 -177286648 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 736 325 342 135 76 chr1 19910112 19910416 -177285016 + MLT1D LTR MaLR 131 452 -53 5 736 669 58 0 0 chr1 19911171 19911257 -177284175 + (GAA)n Simple_repeat Simple_repeat 2 87 0 5 736 431 274 49 0 chr1 19911278 19911380 -177284052 + RSINE1 SINE B4 23 129 -36 5 736 381 22 0 0 chr1 19911389 19911435 -177283997 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 736 405 0 0 0 chr1 19911440 19911485 -177283947 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 736 24 0 0 0 chr1 19911523 19911547 -177283885 + AT_rich Low_complexity Low_complexity 1 24 0 5 736 188 86 29 0 chr1 19913710 19913745 -177281687 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 736 523 246 8 34 chr1 19914233 19914349 -177281083 + B3 SINE B2 1 113 -103 5 736 392 278 168 30 chr1 19914349 19914516 -177280916 + B3 SINE B2 2 191 -25 5 736 368 302 151 28 chr1 19914795 19915047 -177280385 + MLT1J1 LTR MaLR 12 294 -150 5 736 378 0 0 0 chr1 19915447 19915489 -177279943 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 736 652 327 104 11 chr1 19915498 19915758 -177279674 - B4 SINE B4 -8 284 1 5 736 310 346 54 16 chr1 19915789 19915974 -177279458 + MIR SINE MIR 5 196 -66 5 736 261 83 0 0 chr1 19916476 19916512 -177278920 + (TATG)n Simple_repeat Simple_repeat 1 36 0 5 736 244 248 17 84 chr1 19919001 19919120 -177276312 + Lx7 LINE L1 6931 7041 -655 5 736 961 264 209 31 chr1 19919143 19919624 -177275808 + Lx7 LINE L1 7130 7696 0 5 736 414 0 0 0 chr1 19920275 19920321 -177275111 + (CTGTG)n Simple_repeat Simple_repeat 2 47 0 5 736 1197 111 0 0 chr1 19920763 19921062 -177274370 + (CA)n Simple_repeat Simple_repeat 1 299 0 5 736 513 0 0 0 chr1 19921554 19921611 -177273821 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 736 463 360 65 49 chr1 19921617 19921801 -177273631 - B4A SINE B4 -102 190 4 5 736 214 128 43 0 chr1 19922006 19922053 -177273379 + T-rich Low_complexity Low_complexity 6 54 0 5 736 1038 95 0 58 chr1 19922053 19922209 -177273223 - B1_Mus1 SINE Alu 0 148 2 5 737 770 275 108 8 chr1 19923022 19923282 -177272150 + RMER15 LTR ERVL 275 560 -15 5 737 13011 95 18 1 chr1 19923850 19926904 -177268528 + L1VL1 LINE L1 217 3312 -2571 5 737 6346 99 1 16 chr1 19926901 19927251 -177268181 + L1_Mus1 LINE L1 5614 5964 -603 5 737 4267 46 2 4 chr1 19927251 19927773 -177267659 + L1Md_F2 LINE L1 6061 6581 -1 5 737 6346 99 1 16 chr1 19927773 19928388 -177267044 + L1_Mus1 LINE L1 5965 6565 -2 5 737 375 354 48 75 chr1 19928780 19929073 -177266359 + ORR1E LTR MaLR 60 344 -15 5 737 397 185 24 12 chr1 19929079 19929161 -177266271 - MLT1A1 LTR MaLR -325 83 1 5 737 3427 52 0 67 chr1 19930239 19930717 -177264715 + L1_Mus1 LINE L1 6122 6567 0 5 737 3919 189 50 18 chr1 19931315 19932347 -177263085 + Lx4B LINE L1 5935 7000 0 5 737 462 351 0 95 chr1 19932936 19933147 -177262285 + MLT1F2 LTR MaLR 21 211 -349 5 737 356 214 0 8 chr1 19933148 19933266 -177262166 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 737 258 198 244 12 chr1 19935788 19935870 -177259562 - MER58B DNA MER1_type 0 341 241 5 737 378 0 0 0 chr1 19936103 19936145 -177259287 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 737 795 263 46 5 chr1 19936198 19936393 -177259039 + B3 SINE B2 2 204 -12 5 737 1662 284 95 47 chr1 19936590 19937288 -177258144 - RCHARR1 DNA MER1_type -223 751 21 5 737 476 298 70 14 chr1 19937278 19937421 -177258011 + RSINE1 SINE B4 15 165 0 5 737 268 276 40 0 chr1 19937830 19937906 -177257526 - PB1D10 SINE Alu -35 82 4 5 737 252 0 0 0 chr1 19938266 19938294 -177257138 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 5 737 1307 67 6 0 chr1 19938794 19938973 -177256459 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 737 198 0 0 0 chr1 19939950 19939972 -177255460 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5 737 222 91 0 0 chr1 19940439 19940472 -177254960 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 737 234 150 0 0 chr1 19942578 19942618 -177252814 + (TTA)n Simple_repeat Simple_repeat 2 41 0 5 737 22 0 0 0 chr1 19942865 19942887 -177252545 + AT_rich Low_complexity Low_complexity 1 22 0 5 737 602 302 36 36 chr1 19943991 19944159 -177251273 + B3A SINE B2 15 182 -34 5 737 390 21 0 0 chr1 19944160 19944207 -177251225 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 737 243 88 0 0 chr1 19944400 19944434 -177250998 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 737 240 143 0 0 chr1 19944573 19944629 -177250803 + (A)n Simple_repeat Simple_repeat 1 56 0 5 737 583 354 43 25 chr1 19944770 19945164 -177250268 + L1MEe LINE L1 1 401 -4453 5 737 1110 308 79 39 chr1 19946822 19947315 -177248117 - MER76 LTR ERVL -3 688 176 5 737 1276 78 17 6 chr1 19947315 19947495 -177247937 + MTB_Mm LTR MaLR 1 182 -225 5 737 1730 78 4 0 chr1 19947648 19947880 -177247552 + MTB_Mm LTR MaLR 175 407 0 5 737 255 368 16 23 chr1 19947900 19948028 -177247404 - MER76 LTR ERVL -561 130 4 5 737 253 0 54 0 chr1 19948491 19948528 -177246904 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 737 1149 68 0 0 chr1 19948528 19948675 -177246757 - B1_Mus1 SINE Alu 0 148 2 5 737 22 0 0 0 chr1 19949202 19949224 -177246208 + AT_rich Low_complexity Low_complexity 1 22 0 5 737 236 327 73 0 chr1 19950133 19950243 -177245189 - MIR SINE MIR -114 148 31 5 737 242 116 23 0 chr1 19950816 19950859 -177244573 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 737 197 331 62 46 chr1 19951247 19951377 -177244055 - MIRc SINE MIR -72 196 65 5 737 1583 183 18 44 chr1 19951557 19951895 -177243537 - ORR1A4 LTR MaLR 0 329 1 5 737 320 315 0 0 chr1 19951920 19951993 -177243439 - ID4_ SINE ID -4 79 7 5 737 267 261 58 115 chr1 19952074 19952230 -177243202 + B1F2 SINE Alu 1 147 -2 5 737 256 188 84 28 chr1 19953854 19953925 -177241507 - RLTR12B LTR ERVK -27 501 427 5 737 328 244 22 44 chr1 19954545 19954635 -177240797 - B4A SINE B4 -14 278 191 5 737 471 18 0 0 chr1 19955986 19956042 -177239390 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 737 462 36 0 0 chr1 19956663 19956719 -177238713 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 737 257 292 0 7 chr1 19956756 19956911 -177238521 + (CA)n Simple_repeat Simple_repeat 2 155 0 5 737 235 246 0 17 chr1 19957234 19957292 -177238140 + Lx4B LINE L1 6606 6662 -396 6 737 2067 227 81 9 chr1 19957296 19957879 -177237553 + Lx3C LINE L1 6349 6973 -3 6 737 1226 35 0 0 chr1 19957966 19958108 -177237324 - B1_Mus1 SINE Alu -6 142 1 6 737 231 36 0 0 chr1 19958634 19958662 -177236770 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 737 671 267 69 10 chr1 19960563 19960767 -177234665 + B3 SINE B2 1 216 0 6 737 342 0 0 0 chr1 19960810 19960848 -177234584 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 737 350 312 56 42 chr1 19960851 19960995 -177234437 - RSINE1 SINE B4 -18 147 2 6 737 351 0 0 0 chr1 19961297 19961336 -177234096 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 6 737 279 344 55 23 chr1 19961435 19961563 -177233869 + MIR SINE MIR 87 218 -44 6 737 4626 61 0 0 chr1 19962146 19962721 -177232711 - L1_Mus2 LINE L1 -1 6565 5991 6 737 256 310 33 66 chr1 19963652 19963773 -177231659 - MIRc SINE MIR -2 266 150 6 737 260 85 43 0 chr1 19965021 19965068 -177230364 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 6 737 3881 148 45 20 chr1 19965120 19965935 -177229497 + RLTR25A LTR ERVK 1 827 -201 6 737 678 184 40 0 chr1 19965909 19966034 -177229398 + RLTR25A LTR ERVK 974 1103 0 6 737 845 19 10 0 chr1 19966132 19966235 -177229197 + (TTC)n Simple_repeat Simple_repeat 2 105 0 6 737 216 0 0 0 chr1 19966742 19966766 -177228666 + (A)n Simple_repeat Simple_repeat 1 24 0 6 737 360 64 0 0 chr1 19967429 19967476 -177227956 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 737 533 279 39 82 chr1 19967615 19967780 -177227652 + B3A SINE B2 1 155 -43 6 737 450 0 0 0 chr1 19967780 19967830 -177227602 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 737 533 279 39 82 chr1 19967830 19967871 -177227561 + B3A SINE B2 156 198 0 6 737 610 274 205 7 chr1 19967873 19968156 -177227276 - Lx9 LINE L1 -203 7441 7103 6 737 31 76 0 0 chr1 19968243 19968309 -177227123 + AT_rich Low_complexity Low_complexity 1 66 0 6 737 513 330 113 56 chr1 19968370 19968935 -177226497 + L2a LINE L2 2824 3420 -6 6 737 459 0 0 0 chr1 19970566 19970617 -177224815 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 737 879 254 70 0 chr1 19970671 19970872 -177224560 - B3 SINE B2 0 216 2 6 737 474 65 0 0 chr1 19971058 19971120 -177224312 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 737 213 149 20 41 chr1 19972787 19972836 -177222596 + A-rich Low_complexity Low_complexity 2 49 0 6 737 255 188 0 0 chr1 19974231 19974279 -177221153 + MIRc SINE MIR 190 237 -31 6 737 678 13 0 0 chr1 19975546 19975625 -177219807 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 6 737 1270 267 108 14 chr1 19976061 19976422 -177219010 - MTD LTR MaLR 0 419 25 6 737 717 74 44 0 chr1 19976435 19976570 -177218862 + (CCCTAA)n Simple_repeat Simple_repeat 2 142 0 6 737 413 273 60 102 chr1 19976759 19976926 -177218506 + B4 SINE B4 64 223 -69 6 737 832 159 22 0 chr1 19976789 19976927 -177218505 + B1_Mus1 SINE Alu 7 147 -1 6 737 180 0 0 0 chr1 19977259 19977279 -177218153 + (A)n Simple_repeat Simple_repeat 1 20 0 6 737 28 0 0 0 chr1 19977559 19977587 -177217845 + AT_rich Low_complexity Low_complexity 1 28 0 6 737 522 318 32 49 chr1 19978447 19978632 -177216800 - B3A SINE B2 -16 182 1 6 737 460 30 30 0 chr1 19979259 19979325 -177216107 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 737 185 111 56 0 chr1 19979326 19979362 -177216070 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 6 737 198 371 71 33 chr1 19980600 19980784 -177214648 - MIR SINE MIR -15 253 56 6 737 1058 73 29 0 chr1 19980856 19980992 -177214440 + B1_Mus1 SINE Alu 2 141 -7 6 737 258 32 0 0 chr1 19980992 19981023 -177214409 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 6 737 6754 65 2 0 chr1 19982093 19983001 -177212431 - L1_Mus1 LINE L1 0 6654 5664 6 737 307 102 0 0 chr1 19983010 19983059 -177212373 - L1_Mm LINE L1 -2614 3269 3221 6 737 22673 51 1 142 chr1 19983048 19984361 -177211071 - L1_Mus1 LINE L1 -1160 4723 3928 6 737 5194 36 0 0 chr1 19984361 19984970 -177210462 - L1Md_T LINE L1 0 6582 5974 6 737 22673 51 1 142 chr1 19984970 19985020 -177210412 - L1_Mm LINE L1 -1956 3927 3927 6 737 3640 120 28 30 chr1 19985020 19985622 -177209810 - Lx3B LINE L1 0 6973 6373 6 737 410 34 0 0 chr1 19985631 19985690 -177209742 - L1Md_T LINE L1 0 6582 6524 6 737 22673 53 1 141 chr1 19985690 19988449 -177206983 - L1_Mus1 LINE L1 -1956 3927 1170 6 737 5216 172 19 25 chr1 19988455 19989748 -177205684 - L1_Mus1 LINE L1 -5411 1205 99 6 737 2788 181 94 16 chr1 19989863 19990503 -177204929 + RMER6C LTR ERVK 1 690 0 6 737 1169 55 0 7 chr1 19990762 19990908 -177204524 + B1_Mus1 SINE Alu 1 145 -3 6 737 519 295 62 0 chr1 19991176 19991305 -177204127 - B1F2 SINE Alu 0 149 13 6 737 574 184 11 199 chr1 19991585 19991761 -177203671 + B1_Mur4 SINE Alu 1 143 -7 6 737 333 0 0 0 chr1 19991768 19991805 -177203627 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 737 33 43 0 0 chr1 19991939 19991986 -177203446 + AT_rich Low_complexity Low_complexity 1 47 0 6 737 687 306 45 42 chr1 19991992 19992323 -177203109 - Lx9 LINE L1 -405 7239 6908 6 737 2405 84 12 0 chr1 19992474 19992794 -177202638 + ORR1A2 LTR MaLR 1 324 -3 6 737 23 0 0 0 chr1 19992818 19992841 -177202591 + AT_rich Low_complexity Low_complexity 1 23 0 6 737 4557 107 37 4 chr1 19992901 19993598 -177201834 + L1_Mus4 LINE L1 5914 6633 -3 6 737 1181 91 11 0 chr1 19993611 19993787 -177201645 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 737 204 139 0 27 chr1 19993787 19993824 -177201608 + GA-rich Low_complexity Low_complexity 1 36 0 6 737 1164 206 60 17 chr1 19994167 19994468 -177200964 - Lx7 LINE L1 -1 7695 7382 6 737 2900 36 41 0 chr1 19994725 19995089 -177200343 + L1Md_F3 LINE L1 6206 6584 0 6 737 22 0 0 0 chr1 19995661 19995683 -177199749 + AT_rich Low_complexity Low_complexity 1 22 0 6 737 296 357 25 74 chr1 19995960 19996013 -177199419 + PB1 SINE Alu 1 55 -72 6 737 1314 91 5 11 chr1 19996013 19996202 -177199230 + B2_Mm2 SINE B2 1 188 -7 6 737 296 357 25 74 chr1 19996202 19996269 -177199163 + PB1 SINE Alu 56 115 -12 6 737 21 0 0 0 chr1 19996405 19996426 -177199006 + AT_rich Low_complexity Low_complexity 1 21 0 6 737 787 280 108 23 chr1 19996785 19997173 -177198259 - L1MA8 LINE L1 -383 5908 5488 6 737 207 139 0 0 chr1 19997351 19997387 -177198045 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 737 279 0 0 0 chr1 19997406 19997437 -177197995 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 737 213 39 0 0 chr1 19997560 19997586 -177197846 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 737 2652 89 71 3 chr1 19997627 19998019 -177197413 + L1_Mus3 LINE L1 6207 6625 -13 6 737 234 0 0 0 chr1 19998019 19998045 -177197387 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 6 737 6549 113 4 1 chr1 19998792 19999791 -177195641 + L1_Mm LINE L1 4859 5860 -23 6 737 318 106 0 0 chr1 19999940 19999987 -177195445 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 737 1781 207 40 19 chr1 20000776 20000829 -177194603 + ORR1C1 LTR MaLR 1 54 -324 1 737 2926 92 7 10 chr1 20000829 20001237 -177194195 - MTB_Mm LTR MaLR 0 407 1 2 737 1781 207 40 19 chr1 20001237 20001553 -177193879 + ORR1C1 LTR MaLR 55 378 0 1 737 333 372 30 49 chr1 20002039 20002203 -177193229 - MER20 DNA MER1_type -28 191 31 3 737 303 232 31 31 chr1 20002471 20002600 -177192832 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 4 737 537 248 8 8 chr1 20003212 20003338 -177192094 - Lx8 LINE L1 -746 6727 6602 5 737 321 352 104 15 chr1 20003332 20003534 -177191898 + Lx8 LINE L1 6344 6563 -910 6 737 515 305 44 49 chr1 20003536 20003719 -177191713 + MTE2a LTR MaLR 193 374 -5 7 737 22 35 0 0 chr1 20005796 20005825 -177189607 + AT_rich Low_complexity Low_complexity 1 29 0 8 737 1632 224 35 40 chr1 20006644 20006686 -177188746 - ORR1D1 LTR MaLR 0 374 338 9 737 2450 80 0 58 chr1 20006686 20007033 -177188399 - ORR1A2 LTR MaLR 0 327 1 1 737 1632 224 35 40 chr1 20007033 20007366 -177188066 - ORR1D1 LTR MaLR -37 337 1 9 737 188 243 0 0 chr1 20007412 20007449 -177187983 - L2a LINE L2 -1 3425 3389 1 737 339 65 0 0 chr1 20007761 20007807 -177187625 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 737 221 273 26 13 chr1 20009280 20009358 -177186074 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 1 737 234 207 0 0 chr1 20009398 20009456 -177185976 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 1 737 22 0 0 0 chr1 20010037 20010059 -177185373 + AT_rich Low_complexity Low_complexity 1 22 0 1 737 415 319 18 36 chr1 20010712 20010878 -177184554 + RSINE1 SINE B4 3 165 0 1 737 319 291 33 14 chr1 20011197 20011361 -177184071 - L1M2 LINE L1 -636 5520 5355 1 737 22 35 0 0 chr1 20011422 20011451 -177183981 + AT_rich Low_complexity Low_complexity 1 29 0 1 737 210 312 0 13 chr1 20011629 20011707 -177183725 + CT-rich Low_complexity Low_complexity 4 80 0 1 737 339 316 0 30 chr1 20011741 20011842 -177183590 - PB1D10 SINE Alu -18 99 2 1 737 649 314 37 76 chr1 20011843 20012076 -177183356 - L1M2 LINE L1 -1019 5121 4901 1 737 693 273 5 28 chr1 20012076 20012287 -177183145 - B3 SINE B2 -8 208 3 2 737 739 302 29 35 chr1 20012287 20012812 -177182620 - L1M2 LINE L1 -1230 4913 4393 1 737 34419 65 3 3 chr1 20012973 20019229 -177176203 - L1Md_F3 LINE L1 -2 6582 324 2 737 203 254 0 35 chr1 20019338 20019395 -177176037 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 2 737 344 362 72 26 chr1 20019838 20019991 -177175441 - LTR40a LTR ERVL -359 160 1 2 737 241 322 59 40 chr1 20020447 20020599 -177174833 - MIR SINE MIR 0 262 108 2 737 262 191 147 0 chr1 20020601 20020621 -177174811 + L1M2 LINE L1 5618 5647 -644 2 737 234 0 0 0 chr1 20020621 20020647 -177174785 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 737 262 248 126 13 chr1 20020647 20020775 -177174657 + L1M2 LINE L1 5638 5779 -512 2 737 833 163 179 0 chr1 20020881 20021071 -177174361 + URR1A DNA MER1_type 1 224 -2 2 737 492 311 21 10 chr1 20021562 20021746 -177173686 + B3A SINE B2 3 186 -30 2 737 570 215 179 99 chr1 20021799 20021977 -177173455 + RLTR42 LTR ERVK 1 184 -55 2 737 498 17 0 0 chr1 20021977 20022036 -177173396 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 737 570 215 179 99 chr1 20022036 20022058 -177173374 + RLTR42 LTR ERVK 185 217 -22 2 737 22 0 0 0 chr1 20022202 20022224 -177173208 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 271 226 0 0 chr1 20023124 20023186 -177172246 + Lx9 LINE L1 7357 7418 -226 3 737 306 0 0 0 chr1 20023243 20023277 -177172155 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 737 322 218 0 43 chr1 20023277 20023392 -177172040 + Lx9 LINE L1 7520 7629 -15 3 737 38 22 0 0 chr1 20023392 20023437 -177171995 + AT_rich Low_complexity Low_complexity 1 45 0 3 737 3500 215 68 23 chr1 20023587 20024473 -177170959 - Lx7 LINE L1 -74 7622 6697 3 737 205 232 18 18 chr1 20024816 20024873 -177170559 + GA-rich Low_complexity Low_complexity 2 58 0 3 737 592 235 46 57 chr1 20026039 20026233 -177169199 - B3A SINE B2 -6 192 1 3 737 21 36 0 0 chr1 20026235 20026263 -177169169 + AT_rich Low_complexity Low_complexity 1 28 0 3 737 701 314 3 24 chr1 20026772 20027059 -177168373 + Lx9 LINE L1 7098 7378 -266 3 737 795 328 48 24 chr1 20027250 20028042 -177167390 + L1MA4 LINE L1 5330 6143 -157 4 737 238 344 31 31 chr1 20028121 20028217 -177167215 + PB1D10 SINE Alu 11 106 -11 4 737 334 196 0 21 chr1 20028324 20028418 -177167014 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 737 761 229 77 10 chr1 20028669 20028876 -177166556 + Lx4B LINE L1 6834 7054 -4 4 737 38 61 0 0 chr1 20028910 20028976 -177166456 + AT_rich Low_complexity Low_complexity 1 66 0 4 737 17583 28 0 2 chr1 20030268 20032040 -177163392 - L1Md_T LINE L1 0 6582 4818 4 737 3344 37 0 138 chr1 20032040 20032546 -177162886 - RLTR10C LTR ERVK 0 436 1 4 737 17583 27 1 4 chr1 20032546 20033667 -177161765 - L1Md_T LINE L1 -1066 4817 3696 4 737 6083 41 6 28 chr1 20033661 20035240 -177160192 - L1Md_T LINE L1 -3906 1977 441 4 737 255 358 28 55 chr1 20035270 20035415 -177160017 - MLT1A0 LTR MaLR -163 464 324 4 737 445 290 124 0 chr1 20035724 20035869 -177159563 + RSINE1 SINE B4 3 165 0 4 737 33 56 0 0 chr1 20036630 20036684 -177158748 + AT_rich Low_complexity Low_complexity 1 54 0 4 737 1195 152 4 35 chr1 20036698 20036930 -177158502 - Lx3A LINE L1 -8 6973 6749 5 737 3407 90 9 0 chr1 20036960 20037414 -177158018 - L1_Mus1 LINE L1 -9 6558 6101 5 737 256 337 9 98 chr1 20037495 20037607 -177157825 - MLT1A0 LTR MaLR -99 266 165 4 737 1198 227 104 9 chr1 20038007 20038323 -177157109 - ORR1D1 LTR MaLR -2 372 27 5 737 327 313 0 11 chr1 20038337 20038435 -177156997 + ORR1D-int LTR MaLR 1042 1125 -245 5 737 1225 106 57 24 chr1 20038435 20038647 -177156785 - L1_Mus3 LINE L1 -1 6637 6419 5 737 406 256 0 0 chr1 20038647 20038733 -177156699 - ORR1D1 LTR MaLR -288 86 1 5 737 275 308 77 0 chr1 20040173 20040303 -177155129 - L1MA8 LINE L1 -5 6286 6147 5 737 21 0 0 0 chr1 20041149 20041170 -177154262 + AT_rich Low_complexity Low_complexity 1 21 0 5 737 13849 180 57 96 chr1 20041898 20045327 -177150105 - L1VL4 LINE L1 -64 5819 2447 5 737 585 80 11 22 chr1 20045327 20045417 -177150015 - IAPEY2_LTR LTR ERVK 0 357 269 5 737 286 83 0 0 chr1 20045416 20045452 -177149980 - IAPLTR2b LTR ERVK -291 36 1 6 737 13849 180 57 96 chr1 20045452 20047101 -177148331 - L1VL4 LINE L1 -64 2446 823 5 737 453 257 62 94 chr1 20047148 20047436 -177147996 - L1VL4 LINE L1 -5776 840 675 5 737 360 342 64 13 chr1 20049291 20049448 -177145984 - MIR SINE MIR -73 189 25 6 737 378 0 0 0 chr1 20051327 20051369 -177144063 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 737 198 71 0 0 chr1 20051369 20051396 -177144036 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 737 968 102 0 7 chr1 20051429 20051577 -177143855 + (TTCC)n Simple_repeat Simple_repeat 2 148 0 6 737 405 0 0 0 chr1 20051577 20051622 -177143810 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 737 3751 122 38 27 chr1 20052137 20052762 -177142670 - Lx LINE L1 -2 6652 6021 6 737 1746 49 0 0 chr1 20053652 20053876 -177141556 - L1_Mus1 LINE L1 -396 6171 5948 6 737 587 48 0 24 chr1 20053876 20053961 -177141471 + L1_Mus1 LINE L1 6485 6567 0 6 738 4017 104 3 14 chr1 20054602 20055235 -177140197 - L1_Mus1 LINE L1 -330 5553 4928 6 738 4555 71 21 11 chr1 20055233 20055890 -177139542 + L1_Mus1 LINE L1 5587 6222 -345 6 738 1884 66 0 16 chr1 20055890 20056135 -177139297 + L1_Mus1 LINE L1 6326 6566 -1 6 738 1795 203 21 56 chr1 20057004 20057432 -177138000 + Lx5 LINE L1 6635 7047 -3 7 738 595 229 46 23 chr1 20057558 20057732 -177137700 + RLTR28B LTR ERVL 9 186 -295 7 738 197 83 28 0 chr1 20057807 20057843 -177137589 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 738 181 333 48 82 chr1 20058243 20058390 -177137042 - MIRb SINE MIR -87 181 40 7 738 180 111 0 0 chr1 20059366 20059393 -177136039 + (CAT)n Simple_repeat Simple_repeat 1 27 0 7 738 267 103 0 0 chr1 20059472 20059511 -177135921 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 738 180 0 0 0 chr1 20060340 20060360 -177135072 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 738 307 333 40 0 chr1 20060793 20060892 -177134540 + MER33 DNA MER1_type 9 111 -213 7 738 363 290 8 15 chr1 20061694 20061827 -177133605 + (CATA)n Simple_repeat Simple_repeat 1 132 0 7 738 201 260 0 0 chr1 20061847 20061924 -177133508 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 738 609 14 0 0 chr1 20062035 20062105 -177133327 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 8 738 33 0 0 0 chr1 20062433 20062466 -177132966 + AT_rich Low_complexity Low_complexity 1 33 0 8 738 2165 70 17 0 chr1 20062466 20062753 -177132679 - L1_Mus1 LINE L1 -12 6555 6264 8 738 264 320 0 60 chr1 20063051 20063134 -177132298 - ID_B1 SINE B4 -60 164 87 8 738 216 319 122 23 chr1 20063135 20063356 -177132076 + MIR SINE MIR 20 262 0 8 738 23 33 0 0 chr1 20064062 20064092 -177131340 + AT_rich Low_complexity Low_complexity 1 30 0 8 738 201 74 0 0 chr1 20064172 20064199 -177131233 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 738 554 298 58 6 chr1 20064219 20064391 -177131041 - B3A SINE B2 -16 182 2 8 738 239 310 10 10 chr1 20064770 20064871 -177130561 + L1MD1 LINE L1 5679 5779 -2216 8 738 802 48 18 1 chr1 20064950 20065070 -177130362 + B1_Mm SINE Alu 25 149 0 8 738 873 54 0 0 chr1 20065079 20065190 -177130242 + (GAAAA)n Simple_repeat Simple_repeat 2 112 0 9 738 230 284 44 35 chr1 20065200 20065313 -177130119 + L1MD1 LINE L1 5868 5981 -261 8 738 21 0 0 0 chr1 20065318 20065339 -177130093 + AT_rich Low_complexity Low_complexity 1 21 0 9 738 396 316 26 7 chr1 20066163 20066316 -177129116 + HAL1-2a_MD LINE L1 2345 2500 -524 9 738 198 91 0 0 chr1 20066351 20066384 -177129048 + (A)n Simple_repeat Simple_repeat 1 33 0 9 738 421 230 23 31 chr1 20067179 20067314 -177128118 + RLTR20A LTR ERVK 13 154 -423 9 738 341 241 41 213 chr1 20067314 20067535 -177127897 + L1VL1 LINE L1 175 357 -6065 9 738 244 270 122 0 chr1 20067617 20067732 -177127700 + L1Md_F LINE L1 675 803 -5813 9 738 5553 128 7 38 chr1 20067740 20069230 -177126202 + L1Md_F LINE L1 725 2160 -3723 9 738 28 0 0 0 chr1 20069293 20069321 -177126111 + AT_rich Low_complexity Low_complexity 1 28 0 9 738 285 51 0 0 chr1 20069321 20069360 -177126072 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 738 262 288 0 40 chr1 20070354 20070430 -177125002 - PB1 SINE Alu -18 109 37 9 738 202 279 33 0 chr1 20070976 20071037 -177124395 + GA-rich Low_complexity Low_complexity 2 64 0 1 738 242 341 0 24 chr1 20071765 20071849 -177123583 + ID4_ SINE ID 1 82 -1 1 738 576 42 0 0 chr1 20073200 20073271 -177122161 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 738 751 276 10 5 chr1 20074377 20074574 -177120858 + B3 SINE B2 19 216 0 1 738 189 0 0 0 chr1 20074883 20074904 -177120528 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 738 468 0 0 0 chr1 20075393 20075445 -177119987 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 738 31465 79 15 1 chr1 20075445 20080012 -177115420 - L1Md_F2 LINE L1 -19 6563 1978 1 738 257 0 30 0 chr1 20080012 20080045 -177115387 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 738 31465 109 46 14 chr1 20080045 20081898 -177113534 - L1Md_F2 LINE L1 -3906 1977 98 1 738 415 282 13 53 chr1 20081895 20082045 -177113387 - Lx8 LINE L1 -956 6517 6374 1 738 1415 284 61 4 chr1 20082093 20082598 -177112834 + Lx8 LINE L1 6557 7090 -383 1 738 1643 222 28 28 chr1 20082632 20082994 -177112438 + ORR1B1 LTR MaLR 1 362 -32 1 738 545 232 12 2 chr1 20083286 20083404 -177112028 + MTEa LTR MaLR 9 127 -252 1 738 2299 204 37 69 chr1 20083835 20084372 -177111060 + RLTR25A LTR ERVK 1 520 -583 1 738 1648 175 98 85 chr1 20084297 20084758 -177110674 + ORR1B1-int LTR MaLR 499 965 -998 1 738 458 215 61 155 chr1 20084735 20084955 -177110477 + RLTR25B LTR ERVK 620 951 -77 1 738 36961 33 2 6 chr1 20086385 20092579 -177102853 - L1Md_A LINE L1 0 6582 422 1 738 462 238 12 6 chr1 20092900 20093061 -177102371 + (CA)n Simple_repeat Simple_repeat 2 163 0 1 738 3810 45 9 0 chr1 20093838 20094303 -177101129 + L1Md_F3 LINE L1 6113 6581 -3 1 738 672 13 0 0 chr1 20094322 20094399 -177101033 + (GAA)n Simple_repeat Simple_repeat 2 78 0 1 738 260 290 151 16 chr1 20095346 20095472 -177099960 - MIR SINE MIR -11 251 109 1 738 190 125 0 59 chr1 20098172 20098206 -177097226 - L2c LINE L2 -55 3332 3301 1 738 1980 226 35 85 chr1 20098947 20099454 -177095978 + RLTR18B LTR ERVK 6 487 -25 1 738 909 281 61 80 chr1 20099505 20099880 -177095552 + MTEa LTR MaLR 1 368 -11 1 738 561 326 39 0 chr1 20100923 20101101 -177094331 - ID_B1 SINE B4 -28 196 12 1 738 599 294 30 70 chr1 20101347 20101548 -177093884 + B3A SINE B2 1 193 -5 1 738 1084 101 6 6 chr1 20101783 20101962 -177093470 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 1 738 549 343 21 28 chr1 20102066 20102348 -177093084 - B4A SINE B4 -12 280 1 1 738 360 309 66 13 chr1 20102386 20102537 -177092895 - MLT1E2 LTR MaLR -358 269 111 1 738 234 180 0 0 chr1 20102701 20102762 -177092670 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 738 255 305 12 12 chr1 20102776 20102859 -177092573 + B4A SINE B4 206 288 -4 1 738 1999 153 11 17 chr1 20104112 20104471 -177090961 - RLTR15 LTR ERVK 0 359 3 1 738 769 287 22 0 chr1 20104670 20104851 -177090581 + B3 SINE B2 8 192 -24 1 738 513 0 0 0 chr1 20105215 20105272 -177090160 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 738 7154 85 5 1 chr1 20105309 20106702 -177088730 + L1_Mus1 LINE L1 5168 6567 0 1 738 2087 135 9 26 chr1 20108267 20108616 -177086816 - Lx3B LINE L1 -3 6970 6628 1 738 5427 141 47 11 chr1 20108788 20109683 -177085749 + Lx4A LINE L1 6131 7057 -1 1 738 538 277 87 61 chr1 20109690 20110025 -177085407 + Lx8 LINE L1 5461 5776 -524 1 738 1858 181 102 185 chr1 20110025 20110689 -177084743 + RMER19C LTR ERVK 3 611 0 1 738 538 282 81 63 chr1 20110689 20110809 -177084623 + Lx8 LINE L1 5771 5920 -1553 1 738 358 336 9 0 chr1 20111042 20111155 -177084277 + GA-rich Low_complexity Low_complexity 1 114 0 1 738 1128 128 0 0 chr1 20111156 20111335 -177084097 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 1 738 1622 147 25 0 chr1 20111761 20112046 -177083386 - Lx4A LINE L1 -218 6840 6549 1 738 468 0 0 0 chr1 20112374 20112426 -177083006 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 738 288 0 0 0 chr1 20112426 20112457 -177082975 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 738 214 265 0 0 chr1 20112468 20112517 -177082915 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 738 1164 42 0 0 chr1 20112657 20112800 -177082632 + B1_Mus1 SINE Alu 6 148 0 1 738 198 103 0 0 chr1 20113084 20113113 -177082319 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 738 344 77 0 19 chr1 20113113 20113166 -177082266 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 738 429 109 0 0 chr1 20113224 20113288 -177082144 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 738 24 85 0 0 chr1 20113965 20114024 -177081408 + AT_rich Low_complexity Low_complexity 1 59 0 1 738 210 37 0 0 chr1 20114121 20114148 -177081284 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 738 1886 298 35 83 chr1 20114231 20115048 -177080384 - Lx7 LINE L1 -438 7258 6481 1 738 503 276 133 13 chr1 20115414 20115722 -177079710 - Arthur1 DNA Tip100 -163 3784 3440 1 738 328 399 49 25 chr1 20115973 20116217 -177079215 - Arthur1 DNA Tip100 -3694 253 4 1 738 2054 95 16 0 chr1 20116400 20116704 -177078728 + Lx3_Mus LINE L1 6203 6511 -498 1 738 5784 45 3 1 chr1 20116706 20117438 -177077994 + MT-int LTR MaLR 99 831 -267 1 738 6793 128 0 0 chr1 20117440 20118458 -177076974 - MERVL_2A-int LTR ERVL -3589 2172 1155 1 738 2798 114 9 9 chr1 20118458 20118891 -177076541 + Lx3_Mus LINE L1 6523 6955 -54 1 738 420 20 0 0 chr1 20119274 20119323 -177076109 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 738 209 204 20 0 chr1 20119392 20119441 -177075991 + (CAT)n Simple_repeat Simple_repeat 1 50 0 1 738 540 325 31 120 chr1 20119441 20119502 -177075930 + MER89 LTR ERV1 262 312 -247 1 738 369 0 0 0 chr1 20119502 20119543 -177075889 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 738 540 325 31 120 chr1 20119543 20119806 -177075626 + MER89 LTR ERV1 313 557 -2 1 738 199 175 17 17 chr1 20120608 20120666 -177074766 + CT-rich Low_complexity Low_complexity 3 60 0 1 738 183 184 0 0 chr1 20120791 20120829 -177074603 + GA-rich Low_complexity Low_complexity 2 39 0 1 738 760 124 14 7 chr1 20120928 20121066 -177074366 - L1_Mus3 LINE L1 -3 6635 6497 1 738 189 0 0 0 chr1 20122509 20122530 -177072902 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 738 201 154 0 0 chr1 20123519 20123558 -177071874 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 738 387 0 0 0 chr1 20123694 20123737 -177071695 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 738 482 0 17 0 chr1 20124837 20124895 -177070537 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 738 194 367 20 0 chr1 20126252 20126350 -177069082 + MIR SINE MIR 31 130 -132 1 738 250 289 42 69 chr1 20126395 20126558 -177068874 - MLT1B LTR MaLR -9 381 232 1 738 371 386 20 14 chr1 20127171 20127318 -177068114 + ID_B1 SINE B4 70 217 -7 1 738 433 306 50 0 chr1 20127203 20127324 -177068108 + B1F SINE Alu 22 148 -1 1 738 7161 138 6 10 chr1 20127329 20128444 -177066988 + Lx4A LINE L1 5945 7055 -3 1 738 430 388 33 5 chr1 20129692 20129876 -177065556 + MER58A DNA MER1_type 2 190 -34 1 738 298 291 50 91 chr1 20129968 20130089 -177065343 + MLT1I LTR MaLR 287 402 -9 1 738 657 0 0 0 chr1 20130376 20130449 -177064983 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 738 201 74 0 0 chr1 20130978 20131005 -177064427 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 738 483 363 51 19 chr1 20131344 20131560 -177063872 + B4A SINE B4 66 288 -4 1 738 1771 157 41 44 chr1 20131729 20132096 -177063336 - ORR1B1 LTR MaLR -8 386 21 1 738 227 350 16 41 chr1 20132666 20132788 -177062644 - MIRb SINE MIR -22 246 128 1 738 1399 224 110 20 chr1 20134492 20134688 -177060744 - MTD LTR MaLR -14 405 188 1 738 2651 96 6 0 chr1 20134688 20135051 -177060381 - RLTR8 LTR ERVK 0 365 1 1 738 1399 224 110 20 chr1 20135051 20135209 -177060223 - MTD LTR MaLR -232 187 19 1 738 570 95 0 0 chr1 20136715 20136810 -177058622 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 738 342 0 0 0 chr1 20136810 20136848 -177058584 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 738 387 0 0 0 chr1 20136848 20136890 -177058542 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 738 207 0 0 0 chr1 20136890 20136912 -177058520 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 738 290 315 39 16 chr1 20140458 20140682 -177054750 + L1VL1 LINE L1 49 392 -6030 1 738 418 261 44 7 chr1 20140733 20140868 -177054564 + L1Md_F LINE L1 567 706 -5813 1 738 1231 177 312 3 chr1 20140876 20141267 -177054165 + L1Md_F LINE L1 628 1139 -5380 1 738 14402 180 5 198 chr1 20141236 20146500 -177048932 + L1_Mur1 LINE L1 1206 5453 -433 1 738 4555 72 7 0 chr1 20146525 20147124 -177048308 + L1_Mus1 LINE L1 5965 6567 0 1 738 237 336 27 27 chr1 20147142 20147252 -177048180 - MER20 DNA MER1_type -95 124 15 1 738 818 328 73 15 chr1 20147313 20147777 -177047655 + Lx8 LINE L1 6932 7422 -51 1 738 23 54 0 0 chr1 20147795 20147832 -177047600 + AT_rich Low_complexity Low_complexity 1 37 0 1 738 408 364 28 6 chr1 20148287 20148464 -177046968 + Lx8 LINE L1 7113 7293 -180 1 738 23 0 0 0 chr1 20148846 20148869 -177046563 + AT_rich Low_complexity Low_complexity 1 23 0 1 738 295 273 0 0 chr1 20149946 20150034 -177045398 - L1MC2 LINE L1 -376 5968 5881 1 738 277 305 9 0 chr1 20150124 20150229 -177045203 - L1MD LINE L1 -584 5775 5670 1 738 210 162 0 0 chr1 20150229 20150266 -177045166 + A-rich Low_complexity Low_complexity 1 37 0 1 738 681 144 122 81 chr1 20150497 20150680 -177044752 - ORR1B2 LTR MaLR -162 205 14 1 738 2965 84 19 5 chr1 20150680 20151096 -177044336 - L1_Mus4 LINE L1 0 6636 6215 1 738 681 144 122 81 chr1 20151096 20151109 -177044323 - ORR1B2 LTR MaLR -354 13 1 1 738 1157 70 6 47 chr1 20151156 20151349 -177044083 + L1_Mus1 LINE L1 6409 6567 0 1 738 4365 46 9 14 chr1 20152098 20152826 -177042606 - L1Md_F2 LINE L1 -418 6164 5442 1 738 2148 92 66 6 chr1 20152826 20153144 -177042288 + L1Md_F2 LINE L1 6234 6570 -12 1 738 456 318 8 16 chr1 20153616 20153744 -177041688 + RSINE1 SINE B4 1 127 -38 1 738 442 277 71 93 chr1 20154093 20154276 -177041156 + B3A SINE B2 7 185 -31 2 738 829 274 5 18 chr1 20155159 20155378 -177040054 + B3 SINE B2 1 216 0 2 738 414 0 0 0 chr1 20156467 20156513 -177038919 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 738 234 237 34 0 chr1 20156631 20156690 -177038742 - MamRep488 DNA hAT -91 128 68 2 738 441 0 0 0 chr1 20157170 20157219 -177038213 + (A)n Simple_repeat Simple_repeat 1 49 0 2 738 698 327 59 45 chr1 20157563 20157851 -177037581 - B4 SINE B4 0 292 1 2 738 198 0 0 0 chr1 20158560 20158582 -177036850 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 738 616 288 0 104 chr1 20158885 20159067 -177036365 + RSINE1 SINE B4 3 165 0 2 738 363 144 144 0 chr1 20159118 20159215 -177036217 + L1_Mm LINE L1 2017 2127 -3756 2 738 361 281 0 0 chr1 20159359 20159448 -177035984 - PB1D10 SINE Alu -2 115 27 2 738 243 0 0 0 chr1 20160103 20160130 -177035302 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 738 32 86 0 0 chr1 20160144 20160225 -177035207 + AT_rich Low_complexity Low_complexity 1 81 0 2 738 26 30 0 0 chr1 20160336 20160369 -177035063 + AT_rich Low_complexity Low_complexity 1 33 0 2 738 304 208 83 0 chr1 20160473 20160545 -177034887 + L1M2 LINE L1 2745 2822 -3321 2 738 2663 66 91 3 chr1 20161896 20162260 -177033172 + MTA_Mm LTR MaLR 1 396 0 2 738 761 141 15 0 chr1 20162296 20162431 -177033001 + CT-rich Low_complexity Low_complexity 2 138 0 2 738 1050 101 0 0 chr1 20162431 20162579 -177032853 - B1_Mus1 SINE Alu 0 148 1 2 738 393 39 0 0 chr1 20163383 20163434 -177031998 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 738 1115 211 160 0 chr1 20163434 20163690 -177031742 - ORR1C1 LTR MaLR -81 297 1 2 738 796 269 38 0 chr1 20165086 20165298 -177030134 + Lx8 LINE L1 6655 6874 -599 2 738 821 255 37 5 chr1 20165551 20165740 -177029692 + B3 SINE B2 11 205 -11 2 738 579 191 13 6 chr1 20167523 20167681 -177027751 + (CA)n Simple_repeat Simple_repeat 2 160 0 2 738 315 266 0 0 chr1 20167725 20167838 -177027594 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 738 303 241 83 78 chr1 20167840 20168070 -177027362 - RLTR21 LTR ERVK -266 1306 1076 2 738 238 305 0 0 chr1 20169431 20169490 -177025942 + ID4 SINE ID 12 70 -13 2 738 450 0 0 0 chr1 20169490 20169540 -177025892 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 738 440 276 26 10 chr1 20171566 20171681 -177023751 - PB1D10 SINE Alu -2 125 1 2 738 267 369 54 9 chr1 20171583 20171695 -177023737 - ID_B1 SINE B4 -45 179 63 2 738 232 346 89 15 chr1 20171822 20171957 -177023475 + MLT1E3 LTR MaLR 305 449 -175 2 738 2894 78 0 0 chr1 20172382 20172753 -177022679 - Lx3_Mus LINE L1 -283 6726 6356 2 738 321 148 0 0 chr1 20172753 20172814 -177022618 + Lx3_Mus LINE L1 6949 7009 0 2 738 880 167 29 58 chr1 20173365 20173537 -177021895 + Lx5 LINE L1 6612 6778 -272 2 738 612 0 0 0 chr1 20173565 20173633 -177021799 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 738 241 196 0 0 chr1 20173633 20173679 -177021753 - B1_Mus2 SINE Alu -49 98 53 2 738 1114 147 10 5 chr1 20173732 20173889 -177021543 + B2_Mm2 SINE B2 3 161 -34 2 738 249 33 0 0 chr1 20173889 20173919 -177021513 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 738 1114 147 10 5 chr1 20173919 20173953 -177021479 + B2_Mm2 SINE B2 162 195 0 2 738 657 318 11 6 chr1 20173954 20174128 -177021304 - B3A SINE B2 -22 176 2 2 738 282 193 0 0 chr1 20174422 20174479 -177020953 + (CATA)n Simple_repeat Simple_repeat 3 59 0 2 738 315 0 0 0 chr1 20174927 20174962 -177020470 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 738 23 78 0 0 chr1 20175007 20175058 -177020374 + AT_rich Low_complexity Low_complexity 1 51 0 2 738 358 227 15 98 chr1 20175058 20175190 -177020242 + Charlie5 DNA MER1_type 2238 2358 -266 2 738 731 303 40 21 chr1 20175200 20175530 -177019902 + Lx7 LINE L1 5606 5968 -188 2 738 895 323 97 16 chr1 20175931 20176644 -177018788 + L1MB3 LINE L1 5348 6153 -30 2 738 438 139 0 0 chr1 20176742 20176814 -177018618 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 738 594 0 0 0 chr1 20176994 20177060 -177018372 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 738 1074 82 7 14 chr1 20177088 20177236 -177018196 - B1_Mus2 SINE Alu 0 147 1 2 738 213 274 71 31 chr1 20177277 20177375 -177018057 + L3 LINE CR1 4167 4268 -221 2 738 818 293 135 12 chr1 20177934 20178268 -177017164 + MTE2a LTR MaLR 5 379 0 2 738 22 0 0 0 chr1 20179229 20179251 -177016181 + AT_rich Low_complexity Low_complexity 1 22 0 2 738 254 332 35 49 chr1 20179838 20180041 -177015391 + MIR SINE MIR 51 250 -12 2 738 368 286 20 30 chr1 20181391 20181502 -177013930 - PB1D10 SINE Alu -8 119 1 2 738 580 132 16 0 chr1 20181680 20181809 -177013623 + (TC)n Simple_repeat Simple_repeat 2 132 0 2 738 303 136 0 0 chr1 20181808 20181867 -177013565 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 738 725 144 0 0 chr1 20181983 20182122 -177013310 - Lx3_Mus LINE L1 -18 6991 6853 2 738 717 35 12 0 chr1 20182122 20182208 -177013224 + L1_Mur1 LINE L1 4895 4981 -905 2 738 321 100 0 0 chr1 20182971 20183021 -177012411 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 92 412 314 83 10 chr1 20184984 20185177 -177010255 + LTR16C LTR ERVL 283 489 0 2 739 615 284 140 83 chr1 20185461 20185811 -177009621 - MTE2b LTR MaLR -1 378 9 2 739 338 91 0 18 chr1 20185877 20185933 -177009499 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 739 180 0 0 0 chr1 20186041 20186061 -177009371 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 739 1838 170 174 14 chr1 20186725 20187138 -177008294 + RMER6A LTR ERVK 26 504 -252 2 739 324 0 0 0 chr1 20187599 20187635 -177007797 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 739 464 269 14 88 chr1 20188419 20188566 -177006866 + MLT1A1 LTR MaLR 271 406 -2 2 739 429 20 0 0 chr1 20189780 20189830 -177005602 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 739 622 299 24 38 chr1 20189845 20190054 -177005378 + B3 SINE B2 4 209 -7 2 739 226 146 41 20 chr1 20191718 20191735 -177003697 + polypurine Low_complexity Low_complexity 2 18 0 2 739 1044 116 0 0 chr1 20191735 20191882 -177003550 + B1_Mm SINE Alu 1 147 0 2 739 226 146 41 20 chr1 20191882 20191913 -177003519 + polypurine Low_complexity Low_complexity 19 51 0 2 739 1108 68 7 20 chr1 20192075 20192224 -177003208 + B1_Mus1 SINE Alu 1 147 -1 2 739 1258 81 0 22 chr1 20192394 20192766 -177002666 + (GAAA)n Simple_repeat Simple_repeat 1 363 0 2 739 354 301 36 14 chr1 20192810 20192948 -177002484 + B1F1 SINE Alu 1 141 -8 2 739 293 267 88 10 chr1 20193303 20193405 -177002027 - PB1D10 SINE Alu -7 110 1 2 739 408 20 0 0 chr1 20193651 20193700 -177001732 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 739 246 313 12 0 chr1 20193703 20193786 -177001646 - MIR SINE MIR -75 187 104 2 739 1899 78 29 4 chr1 20194636 20194933 -177000499 - L1_Mus1 LINE L1 0 6567 6283 2 739 1188 224 171 5 chr1 20196186 20196600 -176998832 - Lx9 LINE L1 -1 7643 7114 2 739 252 311 62 85 chr1 20197035 20197165 -176998267 - MER20 DNA MER1_type -79 140 14 2 739 547 292 197 9 chr1 20197461 20197689 -176997743 - Lx8 LINE L1 -143 7330 7060 2 739 385 243 0 0 chr1 20197688 20197758 -176997674 + Lx5 LINE L1 6704 6773 -277 2 739 3715 161 38 12 chr1 20197753 20198406 -176997026 + L1_Mur2 LINE L1 4995 5664 -213 2 739 364 367 31 16 chr1 20198414 20198605 -176996827 + L1MEf LINE L1 1444 1637 -4563 2 739 198 103 0 0 chr1 20199484 20199513 -176995919 + (TTTCC)n Simple_repeat Simple_repeat 2 30 0 2 739 224 367 38 0 chr1 20200027 20200106 -176995326 + PB1 SINE Alu 1 82 -45 2 739 194 242 71 57 chr1 20200393 20200463 -176994969 - L2c LINE L2 -92 3295 3225 2 739 405 0 0 0 chr1 20200558 20200603 -176994829 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 739 864 112 0 8 chr1 20200641 20200767 -176994665 - B2_Mm2 SINE B2 -70 125 1 2 739 619 257 14 7 chr1 20201111 20201252 -176994180 + B1_Mur2 SINE Alu 2 143 -6 2 739 334 284 77 19 chr1 20201289 20201393 -176994039 + PB1D10 SINE Alu 6 115 -2 2 739 313 268 241 62 chr1 20201402 20201693 -176993739 + HAL1-3A_ME LINE L1 2097 2439 -419 2 739 517 258 0 127 chr1 20202263 20202341 -176993091 + B4 SINE B4 27 86 -206 2 739 326 279 69 11 chr1 20202341 20202428 -176993004 + B1_Mus2 SINE Alu 2 93 -54 2 739 22 94 0 0 chr1 20203639 20203703 -176991729 + AT_rich Low_complexity Low_complexity 1 64 0 2 739 440 311 95 19 chr1 20204376 20204586 -176990846 - MIRb SINE MIR -23 245 20 2 739 22 35 0 0 chr1 20205448 20205477 -176989955 + AT_rich Low_complexity Low_complexity 1 29 0 2 739 1036 78 7 0 chr1 20205500 20205641 -176989791 + B2_Mm1t SINE B2 19 160 -33 2 739 337 303 0 43 chr1 20205710 20205848 -176989584 + L1M2 LINE L1 5455 5586 -726 2 739 358 146 0 33 chr1 20205867 20205959 -176989473 + L1Md_A LINE L1 6490 6578 -4 2 739 387 319 112 18 chr1 20205972 20206141 -176989291 + B4A SINE B4 82 266 -26 2 739 368 162 0 37 chr1 20206201 20206310 -176989122 + (TA)n Simple_repeat Simple_repeat 2 106 0 2 739 748 188 49 11 chr1 20206471 20206654 -176988778 + Lx4B LINE L1 6866 7055 -3 2 739 293 277 35 18 chr1 20206957 20207071 -176988361 + L1MA8 LINE L1 6170 6285 -6 2 739 405 0 0 0 chr1 20207134 20207179 -176988253 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 739 597 14 0 0 chr1 20207317 20207387 -176988045 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 739 402 21 0 0 chr1 20207387 20207433 -176987999 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 739 286 345 91 33 chr1 20208065 20208275 -176987157 - RMER15 LTR ERVL -16 559 338 3 739 357 298 39 0 chr1 20208452 20208556 -176986876 - B1F1 SINE Alu -39 110 3 3 739 233 197 13 120 chr1 20208560 20208635 -176986797 - RMER15 LTR ERVL -508 67 1 3 739 228 213 32 16 chr1 20208936 20208998 -176986434 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 3 739 312 256 108 0 chr1 20209006 20209095 -176986337 + MLT2B3 LTR ERVL 342 448 -269 3 739 394 244 36 15 chr1 20209157 20209294 -176986138 - Lx2B LINE L1 -4 6996 6857 3 739 29 0 0 0 chr1 20211046 20211075 -176984357 + AT_rich Low_complexity Low_complexity 1 29 0 3 739 21 71 0 0 chr1 20211449 20211491 -176983941 + AT_rich Low_complexity Low_complexity 1 42 0 3 739 1384 33 0 22 chr1 20212070 20212254 -176983178 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 739 250 229 0 0 chr1 20212809 20212870 -176982562 + CT-rich Low_complexity Low_complexity 1 61 0 3 739 1480 90 0 120 chr1 20215077 20215343 -176980089 + L1_Mus2 LINE L1 6333 6566 0 3 739 504 260 0 0 chr1 20215356 20215502 -176979930 + A-rich Low_complexity Low_complexity 1 146 0 3 739 245 269 2 40 chr1 20215601 20215680 -176979752 - MIR SINE MIR -137 139 61 3 739 261 0 0 0 chr1 20215703 20215732 -176979700 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 739 201 222 0 0 chr1 20215732 20215768 -176979664 + (CG)n Simple_repeat Simple_repeat 1 36 0 3 739 22 0 0 0 chr1 20216806 20216828 -176978604 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 1214 229 178 62 chr1 20216911 20217395 -176978037 - RMER2 LTR ERV1 -27 540 1 3 739 1321 70 16 16 chr1 20217404 20217593 -176977839 - B2_Mm2 SINE B2 -6 189 1 3 739 282 186 28 28 chr1 20217914 20217986 -176977446 - B3 SINE B2 -1 215 144 3 739 618 244 16 0 chr1 20218175 20218298 -176977134 - B3A SINE B2 -73 125 1 3 739 23 54 0 0 chr1 20218850 20218887 -176976545 + AT_rich Low_complexity Low_complexity 1 37 0 3 739 29749 36 1 3 chr1 20219078 20225179 -176970253 - L1Md_T LINE L1 -2 6583 397 3 739 182 329 0 13 chr1 20226129 20226206 -176969226 + L2 LINE L2 3006 3081 -338 3 739 246 62 0 0 chr1 20226437 20226469 -176968963 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 739 23 0 0 0 chr1 20226493 20226516 -176968916 + AT_rich Low_complexity Low_complexity 1 23 0 3 739 186 71 0 0 chr1 20226556 20226584 -176968848 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 739 477 217 0 173 chr1 20226743 20226883 -176968549 + RSINE1 SINE B4 37 151 -14 3 739 369 0 0 0 chr1 20226883 20226924 -176968508 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 739 477 217 0 173 chr1 20226924 20226939 -176968493 + RSINE1 SINE B4 152 165 0 3 739 369 188 0 0 chr1 20226939 20227019 -176968413 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 739 443 273 40 80 chr1 20227141 20227340 -176968092 + B3A SINE B2 3 193 -5 3 739 181 195 24 0 chr1 20227562 20227603 -176967829 + MIR3 SINE MIR 160 201 -7 3 739 328 322 79 0 chr1 20228993 20229145 -176966287 - MIR SINE MIR -71 191 28 3 739 503 282 96 50 chr1 20229878 20230140 -176965292 + MIR SINE MIR 1 253 -9 3 739 299 361 10 0 chr1 20230692 20230789 -176964643 + MLT1J2 LTR MaLR 75 172 -276 3 739 308 179 13 0 chr1 20231562 20231640 -176963792 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 739 363 23 0 0 chr1 20234105 20234149 -176961283 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 739 186 43 0 0 chr1 20234269 20234292 -176961140 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 739 203 122 0 109 chr1 20234294 20234349 -176961083 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 3 739 1605 213 88 22 chr1 20234797 20235162 -176960270 + MTD LTR MaLR 2 390 -29 3 739 5482 81 21 4 chr1 20235916 20236664 -176958768 - L1_Mus1 LINE L1 -1 6566 5806 3 739 3025 89 22 0 chr1 20236664 20237118 -176958314 + L1Md_T LINE L1 3766 4229 -1654 3 739 25 0 0 0 chr1 20237349 20237374 -176958058 + AT_rich Low_complexity Low_complexity 1 25 0 3 739 1158 77 41 12 chr1 20237568 20237740 -176957692 - L1Md_F2 LINE L1 -3 6579 6403 3 739 8609 22 0 0 chr1 20239208 20240256 -176955176 + L1Md_T LINE L1 4539 5586 -297 3 739 9056 4 0 0 chr1 20240256 20241252 -176954180 + L1Md_T LINE L1 5587 6582 0 3 739 448 280 109 80 chr1 20241980 20242291 -176953141 + L1MB8 LINE L1 5834 6153 -25 3 739 320 377 51 13 chr1 20242613 20242769 -176952663 + RSINE1 SINE B4 3 164 -1 3 739 77 71 0 0 chr1 20242805 20242959 -176952473 + AT_rich Low_complexity Low_complexity 1 154 0 3 739 7108 115 11 7 chr1 20243831 20245725 -176949707 - Lx LINE L1 -4 6650 4748 3 739 531 323 15 0 chr1 20246172 20246305 -176949127 + RSINE1 SINE B4 9 143 -22 3 739 276 158 0 0 chr1 20246324 20246381 -176949051 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 739 212 279 0 16 chr1 20246384 20246446 -176948986 + A-rich Low_complexity Low_complexity 3 63 0 3 739 353 212 132 28 chr1 20246507 20246674 -176948758 + Lx9 LINE L1 4483 4645 -1498 3 739 685 266 32 18 chr1 20246676 20247014 -176948418 + Lx9 LINE L1 5670 6047 -1597 3 739 1216 285 26 3 chr1 20247037 20247389 -176948043 + Lx9 LINE L1 6341 6700 -944 3 739 329 190 25 0 chr1 20247390 20247469 -176947963 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 3 739 236 188 24 24 chr1 20247497 20247579 -176947853 + L1MCa LINE L1 1901 1982 -4526 3 739 329 136 15 0 chr1 20247611 20247677 -176947755 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3 739 394 294 102 35 chr1 20247929 20248243 -176947189 - L1M2 LINE L1 -1909 4234 3900 3 739 462 290 58 6 chr1 20248375 20248531 -176946901 + RSINE1 SINE B4 2 165 0 3 739 21 0 0 0 chr1 20249699 20249720 -176945712 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 180 97 0 0 chr1 20250875 20250906 -176944526 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 739 241 207 0 17 chr1 20251431 20251525 -176943907 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 739 920 161 0 11 chr1 20251525 20251707 -176943725 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 739 478 326 116 24 chr1 20251714 20251965 -176943467 + MTC LTR MaLR 1 274 -147 3 739 829 253 19 0 chr1 20251951 20252105 -176943327 - B3 SINE B2 -59 157 1 3 739 6369 61 1 0 chr1 20252195 20252999 -176942433 - L1Md_T LINE L1 0 6582 5778 3 739 432 67 0 0 chr1 20253050 20253110 -176942322 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 739 336 253 9 92 chr1 20253162 20253271 -176942161 - B4A SINE B4 0 292 193 3 739 250 296 142 78 chr1 20253339 20253607 -176941825 - MLT1G3 LTR MaLR -229 366 82 3 739 649 250 110 4 chr1 20253668 20253905 -176941527 + Charlie4a DNA MER1_type 247 508 0 3 739 260 333 40 0 chr1 20254553 20254628 -176940804 + MER81 DNA AcHobo 35 112 -2 3 739 634 275 59 158 chr1 20255681 20256126 -176939306 - MTEa LTR MaLR 0 379 1 3 739 230 292 41 14 chr1 20256126 20256180 -176939252 - MTEa LTR MaLR -306 73 18 3 739 354 350 175 14 chr1 20256477 20256694 -176938738 + B4A SINE B4 24 275 -17 3 739 921 154 11 42 chr1 20257736 20257926 -176937506 - B2_Mm2 SINE B2 -9 186 3 3 739 22 0 0 0 chr1 20258065 20258087 -176937345 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 2147 103 3 0 chr1 20258146 20258456 -176936976 + L1_Mus1 LINE L1 6257 6567 0 3 739 308 362 35 93 chr1 20259222 20259457 -176935975 + MLT1G1 LTR MaLR 67 302 -277 3 739 483 130 0 0 chr1 20259917 20259994 -176935438 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 3 739 488 316 109 33 chr1 20260121 20260304 -176935128 - B3A SINE B2 0 198 2 3 739 198 0 0 0 chr1 20260915 20260937 -176934495 + (T)n Simple_repeat Simple_repeat 1 22 0 3 739 195 305 124 21 chr1 20261653 20261750 -176933682 + MIRc SINE MIR 151 257 -11 3 739 220 329 13 26 chr1 20261939 20262017 -176933415 - MIRb SINE MIR -173 95 19 3 739 240 313 0 0 chr1 20262554 20262621 -176932811 + ID4 SINE ID 4 70 -13 3 739 188 214 0 18 chr1 20262659 20262716 -176932716 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 3 739 600 53 0 0 chr1 20262720 20262796 -176932636 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 739 228 355 40 29 chr1 20262826 20263003 -176932429 + MIR SINE MIR 60 245 -23 3 739 201 119 23 23 chr1 20264263 20264306 -176931126 + T-rich Low_complexity Low_complexity 3 45 0 3 739 380 306 142 31 chr1 20264401 20264627 -176930805 + MIR SINE MIR 12 262 0 3 739 607 257 47 68 chr1 20264930 20265037 -176930395 + L1_Mur3 LINE L1 5171 5282 -1018 3 739 262 333 0 0 chr1 20265037 20265109 -176930323 + ID4_ SINE ID 2 73 -10 3 739 607 281 33 50 chr1 20265109 20265438 -176929994 + L1_Mur3 LINE L1 5283 5606 -694 3 739 23 78 0 0 chr1 20265956 20266007 -176929425 + AT_rich Low_complexity Low_complexity 1 51 0 3 739 216 390 21 14 chr1 20267306 20267449 -176927983 - L2 LINE L2 -993 2426 2283 3 739 36225 30 1 0 chr1 20268028 20274876 -176920556 - L1Md_T LINE L1 0 6585 1 3 739 226 77 18 55 chr1 20275030 20275085 -176920347 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 739 1596 284 12 16 chr1 20275240 20275727 -176919705 + Lx7 LINE L1 6823 7307 -389 3 739 326 224 26 8 chr1 20275730 20275847 -176919585 + CT-rich Low_complexity Low_complexity 2 120 0 3 739 485 33 10 61 chr1 20277321 20277419 -176918013 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 739 385 353 77 70 chr1 20279498 20279784 -176915648 - B4 SINE B4 0 292 5 3 739 643 270 68 16 chr1 20279906 20280098 -176915334 + B3 SINE B2 1 202 -14 3 739 32 0 0 0 chr1 20280104 20280136 -176915296 + AT_rich Low_complexity Low_complexity 1 32 0 3 739 20486 172 24 72 chr1 20280143 20285001 -176910431 + L1_Mus1 LINE L1 387 4948 -938 3 739 2145 45 0 62 chr1 20285001 20285307 -176910125 - L1Md_F3 LINE L1 0 6584 6298 4 739 20486 105 8 33 chr1 20285307 20286930 -176908502 + L1_Mus1 LINE L1 4949 6651 -3 3 739 351 0 0 0 chr1 20287134 20287173 -176908259 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 739 387 0 0 0 chr1 20287259 20287302 -176908130 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 4 739 981 104 0 0 chr1 20287307 20287442 -176907990 - B1_Mus2 SINE Alu -12 135 1 4 739 585 0 0 0 chr1 20287507 20287572 -176907860 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 4 739 187 327 104 47 chr1 20288893 20289105 -176906327 + MIR SINE MIR 15 238 -24 4 739 24 0 0 0 chr1 20290221 20290245 -176905187 + AT_rich Low_complexity Low_complexity 1 24 0 4 739 238 233 0 0 chr1 20290885 20290928 -176904504 + PB1D7 SINE Alu 1 43 -77 4 739 197 109 54 18 chr1 20291297 20291353 -176904079 + CT-rich Low_complexity Low_complexity 4 61 0 4 739 3405 118 0 50 chr1 20293929 20294065 -176901367 - L1_Mm LINE L1 -455 5422 5289 4 739 541 96 44 0 chr1 20294065 20294161 -176901271 - B1_Mm SINE Alu 0 147 8 4 739 3405 118 0 50 chr1 20294161 20294644 -176900788 - L1_Mm LINE L1 -455 5288 4811 4 739 6738 74 31 0 chr1 20294639 20295586 -176899846 + L1_Mus1 LINE L1 5591 6566 -1 4 739 1172 278 7 14 chr1 20295614 20295906 -176899526 + B4 SINE B4 1 290 -2 4 739 478 312 12 0 chr1 20296618 20296788 -176898644 + Lx7 LINE L1 7114 7285 -411 4 739 254 261 48 36 chr1 20296823 20296990 -176898442 + Lx7 LINE L1 7511 7679 -17 4 739 1051 160 0 25 chr1 20297618 20297817 -176897615 + Lx2 LINE L1 6804 6997 0 4 739 567 0 0 0 chr1 20299336 20299399 -176896033 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 4 739 303 104 0 0 chr1 20299399 20299447 -176895985 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 739 936 294 87 16 chr1 20299459 20299908 -176895524 - L1MA4 LINE L1 -372 5928 5448 4 739 198 0 0 0 chr1 20301527 20301549 -176893883 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 739 234 0 0 0 chr1 20301634 20301660 -176893772 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 739 588 250 167 0 chr1 20302339 20302519 -176892913 + B3 SINE B2 1 210 -6 4 739 411 151 41 0 chr1 20303403 20303476 -176891956 + B2_Mm2 SINE B2 2 77 -118 4 739 808 129 0 0 chr1 20303492 20303631 -176891801 + L1_Mm LINE L1 5160 5298 -585 4 739 746 22 0 11 chr1 20303658 20303751 -176891681 + (TCTCC)n Simple_repeat Simple_repeat 5 96 0 4 739 228 115 135 0 chr1 20303764 20303816 -176891616 + RMER17A2 LTR ERVK 447 505 -401 4 739 249 143 0 20 chr1 20303810 20303860 -176891572 + B2_Mm2 SINE B2 130 178 -17 4 739 1118 27 7 26 chr1 20303860 20304011 -176891421 - L1Md_A LINE L1 -2 6580 6433 4 739 3190 126 0 2 chr1 20304063 20304578 -176890854 - L1_Mm LINE L1 -929 4954 4441 4 739 446 256 36 65 chr1 20304578 20304716 -176890716 + MT2B LTR ERVL 124 257 -344 4 739 996 96 0 0 chr1 20304625 20304761 -176890671 + B1_Mm SINE Alu 12 147 0 4 739 1957 111 0 0 chr1 20304783 20305089 -176890343 + L1_Mus2 LINE L1 4993 5298 -585 4 739 458 0 0 34 chr1 20305114 20305173 -176890259 + (TCTCC)n Simple_repeat Simple_repeat 5 61 0 4 739 438 144 13 89 chr1 20305173 20305409 -176890023 + RMER17A LTR ERVK 249 503 -306 4 739 39013 11 0 6 chr1 20305444 20311749 -176883683 - L1Md_A LINE L1 0 6582 319 4 739 6794 88 7 7 chr1 20311749 20313000 -176882432 + L1_Mus2 LINE L1 5309 6558 -8 4 739 245 294 18 97 chr1 20313295 20313408 -176882024 - PB1D9 SINE Alu -11 109 6 4 739 1644 225 47 49 chr1 20313505 20313911 -176881521 + MTD LTR MaLR 1 405 -14 4 739 3527 10 5 0 chr1 20313917 20314311 -176881121 - MTA_Mm LTR MaLR 0 396 1 4 739 324 0 0 0 chr1 20314418 20314454 -176880978 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 739 571 200 117 26 chr1 20314569 20314723 -176880709 + RMER30 DNA MER1_type 12 179 -23 4 739 289 347 107 25 chr1 20315233 20315354 -176880078 - ID_B1 SINE B4 -10 214 84 4 740 683 270 34 6 chr1 20316936 20317115 -176878317 - ORR1D2 LTR MaLR -3 367 184 4 740 1961 130 13 0 chr1 20317778 20318079 -176877353 + Lx2 LINE L1 6690 6994 -3 4 740 395 320 45 20 chr1 20319341 20319539 -176875893 - Lx8 LINE L1 -47 7426 7224 4 740 516 32 0 0 chr1 20319553 20319615 -176875817 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 4 740 644 304 20 0 chr1 20319624 20319825 -176875607 - B3 SINE B2 -9 207 3 4 740 247 328 109 0 chr1 20321128 20321256 -176874176 + MER63B DNA AcHobo 290 431 -5 4 740 1138 81 0 0 chr1 20321293 20321441 -176873991 - B1_Mus1 SINE Alu 0 148 1 4 740 24 0 0 0 chr1 20322947 20322971 -176872461 + AT_rich Low_complexity Low_complexity 1 24 0 4 740 232 236 78 65 chr1 20323289 20323366 -176872066 - RLTRETN_Mm LTR ERVK -5 317 240 4 740 265 145 16 16 chr1 20323643 20323706 -176871726 + GA-rich Low_complexity Low_complexity 4 66 0 4 740 384 165 0 0 chr1 20323868 20323959 -176871473 + CT-rich Low_complexity Low_complexity 2 92 0 4 740 1205 268 61 26 chr1 20324090 20324657 -176870775 + Lx6 LINE L1 6093 6885 -575 4 740 1308 273 41 19 chr1 20324685 20325051 -176870381 + Lx6 LINE L1 6977 7350 -110 4 740 650 232 30 20 chr1 20325049 20325247 -176870185 + Lx6 LINE L1 7235 7434 -26 4 740 565 308 166 30 chr1 20325268 20325490 -176869942 - L1_Mur3 LINE L1 -1316 4564 4316 4 740 4769 117 8 19 chr1 20325490 20326223 -176869209 + Lx3B LINE L1 6246 6970 -3 4 740 432 0 0 0 chr1 20326228 20326276 -176869156 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 740 565 308 166 30 chr1 20326276 20326432 -176869000 - L1_Mur3 LINE L1 -1570 4310 4119 4 740 414 0 0 0 chr1 20326432 20326478 -176868954 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 4 740 1137 123 0 0 chr1 20326480 20326659 -176868773 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 740 565 308 166 30 chr1 20326659 20326902 -176868530 - L1_Mur3 LINE L1 -1762 4118 3848 4 740 310 281 0 10 chr1 20326909 20327013 -176868419 + L1_Mur2 LINE L1 4866 4968 -909 4 740 419 176 11 0 chr1 20327040 20327131 -176868301 + GA-rich Low_complexity Low_complexity 4 95 0 4 740 896 309 48 43 chr1 20327215 20327844 -176867588 + L1MA4 LINE L1 5254 5885 -415 4 740 189 0 0 0 chr1 20327898 20327919 -176867513 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 740 265 32 0 0 chr1 20327919 20327950 -176867482 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 740 441 84 0 0 chr1 20327953 20328024 -176867408 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 4 740 1762 232 8 19 chr1 20328194 20328572 -176866860 + ORR1D1 LTR MaLR 1 374 0 4 740 242 276 8 8 chr1 20328741 20328823 -176866609 + GA-rich Low_complexity Low_complexity 1 81 0 4 740 608 103 21 0 chr1 20328823 20328920 -176866512 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 4 740 216 370 0 0 chr1 20328921 20329002 -176866430 + GA-rich Low_complexity Low_complexity 4 84 0 4 740 2847 108 9 13 chr1 20329274 20329732 -176865700 - MusHAL1 LINE L1 -791 1921 1466 4 740 17203 100 6 11 chr1 20329731 20333199 -176862233 + L1_Mus1 LINE L1 3116 6565 -2 4 740 579 265 92 17 chr1 20333206 20333444 -176861988 - MER33 DNA MER1_type -67 257 2 4 740 585 331 21 24 chr1 20333629 20333917 -176861515 + Lx8 LINE L1 7040 7326 -147 4 740 288 307 159 73 chr1 20334133 20334284 -176861148 + RSINE1 SINE B4 2 165 0 4 740 185 213 41 41 chr1 20335166 20335215 -176860217 + MIR SINE MIR 40 88 -120 4 740 465 151 0 0 chr1 20335747 20335833 -176859599 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 740 1027 80 0 0 chr1 20337113 20337250 -176858182 + B1_Mm SINE Alu 1 137 -10 4 740 289 418 0 6 chr1 20337789 20337960 -176857472 + MER20 DNA MER1_type 19 188 -31 4 740 7124 71 6 6 chr1 20338541 20339524 -176855908 + L1_Mus1 LINE L1 5590 6653 -1 4 740 22 0 0 0 chr1 20340970 20340992 -176854440 + AT_rich Low_complexity Low_complexity 1 22 0 4 740 579 328 105 21 chr1 20341051 20341583 -176853849 + L1MD2 LINE L1 5544 6120 -239 4 740 240 100 0 0 chr1 20342498 20342538 -176852894 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 740 401 323 48 74 chr1 20342697 20342971 -176852461 + L1ME3A LINE L1 5763 6033 -129 4 740 198 0 0 0 chr1 20343051 20343073 -176852359 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 740 443 256 5 40 chr1 20343073 20343272 -176852160 - Lx9 LINE L1 -147 7497 7306 4 740 270 210 89 10 chr1 20343272 20343373 -176852059 + Lx9 LINE L1 7531 7639 -5 4 740 623 336 63 0 chr1 20343504 20343775 -176851657 + Lx8 LINE L1 7168 7455 -18 4 740 351 0 0 0 chr1 20344918 20344957 -176850475 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 4 740 981 99 36 67 chr1 20345510 20345705 -176849727 + Lx LINE L1 6458 6646 -8 4 740 975 280 131 21 chr1 20346459 20346795 -176848637 + MTE2b LTR MaLR 4 376 -3 4 740 639 293 69 45 chr1 20346938 20347278 -176848154 + ORR1E LTR MaLR 1 368 -11 4 740 1176 246 76 40 chr1 20347394 20347842 -176847590 + L1_Mur3 LINE L1 460 923 -6789 4 740 262 281 108 59 chr1 20348043 20348145 -176847287 - PB1D7 SINE Alu -1 119 13 4 740 3385 48 103 0 chr1 20348327 20348785 -176846647 + L1_Mus1 LINE L1 6063 6567 0 4 740 242 234 88 50 chr1 20349565 20349665 -176845767 + MIRm SINE MIR 64 168 -108 4 740 21 57 0 0 chr1 20350153 20350188 -176845244 + AT_rich Low_complexity Low_complexity 1 35 0 4 740 302 258 31 31 chr1 20351244 20351372 -176844060 - L1MA6 LINE L1 -4 6296 6169 4 740 544 293 92 33 chr1 20351785 20352175 -176843257 + L1MB1 LINE L1 5694 6107 -82 4 740 1634 132 8 0 chr1 20352173 20352439 -176842993 - L1_Mm LINE L1 -347 5536 5269 4 740 1670 163 67 0 chr1 20352435 20352779 -176842653 - L1_Mm LINE L1 -871 5012 4646 4 740 6391 122 36 18 chr1 20352782 20353864 -176841568 + Lx LINE L1 5547 6649 -5 4 740 1955 207 47 20 chr1 20354572 20354976 -176840456 + MTD LTR MaLR 5 419 0 4 740 306 186 17 0 chr1 20355413 20355472 -176839960 - HAL1-3A_ME LINE L1 -824 2034 1975 4 740 245 214 0 18 chr1 20355475 20355532 -176839900 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 4 740 1143 236 174 18 chr1 20355616 20355948 -176839484 + ORR1C2 LTR MaLR 1 384 0 5 740 263 270 70 16 chr1 20356383 20356511 -176838921 + L1MB8 LINE L1 5962 6096 -82 5 740 659 348 30 13 chr1 20358038 20358268 -176837164 + B4A SINE B4 1 234 -58 5 740 378 382 9 9 chr1 20358319 20358430 -176837002 + RSINE1 SINE B4 53 163 -2 5 740 270 81 0 0 chr1 20358530 20358567 -176836865 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 740 381 210 40 0 chr1 20358589 20358689 -176836743 + L1M3 LINE L1 4014 4117 -2023 5 740 374 149 10 31 chr1 20360023 20360039 -176835393 + G-rich Low_complexity Low_complexity 5 20 0 5 740 958 30 66 0 chr1 20360039 20360206 -176835226 + (GGA)n Simple_repeat Simple_repeat 2 179 0 5 740 374 149 10 31 chr1 20360206 20360286 -176835146 + G-rich Low_complexity Low_complexity 21 98 0 5 740 573 333 35 85 chr1 20360765 20361024 -176834408 + B4A SINE B4 47 292 0 5 740 6685 73 15 3 chr1 20361281 20362227 -176833205 - L1Md_F2 LINE L1 -6 6576 5620 5 740 750 143 19 0 chr1 20362291 20362452 -176832980 + (TA)n Simple_repeat Simple_repeat 2 165 0 5 740 23 33 0 0 chr1 20362455 20362485 -176832947 + AT_rich Low_complexity Low_complexity 1 30 0 5 740 708 278 35 40 chr1 20364210 20364409 -176831023 + B3A SINE B2 1 198 0 5 740 255 239 75 21 chr1 20364427 20364521 -176830911 - Lx7 LINE L1 -861 6835 6737 5 740 21 0 0 0 chr1 20364651 20364672 -176830760 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 22 0 0 0 chr1 20364933 20364955 -176830477 + AT_rich Low_complexity Low_complexity 1 22 0 5 740 3159 73 0 0 chr1 20365528 20365924 -176829508 - MTA_Mm LTR MaLR 0 396 1 5 740 867 124 18 12 chr1 20367963 20368126 -176827306 - L1_Mus3 LINE L1 -4 6634 6471 5 740 880 222 152 20 chr1 20368199 20368443 -176826989 - MTD LTR MaLR 0 419 144 5 740 274 257 136 45 chr1 20368745 20368855 -176826577 + MTD LTR MaLR 6 125 -294 5 740 438 169 0 0 chr1 20368940 20369029 -176826403 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 740 643 78 186 0 chr1 20369122 20369224 -176826208 - B1_Mm SINE Alu 0 147 27 5 740 6088 39 0 0 chr1 20369224 20369944 -176825488 + L1Md_F2 LINE L1 5863 6582 0 5 740 21 36 0 0 chr1 20370029 20370057 -176825375 + AT_rich Low_complexity Low_complexity 1 28 0 5 740 806 293 128 51 chr1 20372409 20372772 -176822660 - MTD LTR MaLR 0 419 1 5 740 1193 134 9 27 chr1 20372985 20373207 -176822225 - Lx2 LINE L1 -1 6996 6779 5 740 6147 152 12 8 chr1 20373209 20374831 -176820601 - Lx2 LINE L1 -352 6645 5316 5 740 19933 114 71 34 chr1 20374877 20377472 -176817960 + L1_Mus1 LINE L1 2186 5002 -881 5 740 911 91 20 40 chr1 20377472 20377621 -176817811 + B1_Mm SINE Alu 1 146 -1 5 740 19933 91 40 14 chr1 20377621 20379258 -176816174 + L1_Mus1 LINE L1 5003 6567 0 5 740 4948 115 15 5 chr1 20379275 20380508 -176814924 - Lx2 LINE L1 -2143 1771 523 5 740 302 290 151 55 chr1 20380718 20380937 -176814495 + L2 LINE L2 2337 2576 -843 5 740 2194 126 31 28 chr1 20382611 20382894 -176812538 - Lx4A LINE L1 -278 6780 6492 5 740 3560 18 0 0 chr1 20382894 20383290 -176812142 - MTA_Mm LTR MaLR 0 396 1 5 740 9313 17 19 1 chr1 20383290 20384368 -176811064 - MTA_Mm-int LTR MaLR 0 1098 1 5 740 3585 15 0 0 chr1 20384368 20384764 -176810668 - MTA_Mm LTR MaLR 0 396 1 5 740 2194 126 31 28 chr1 20384764 20384870 -176810562 - Lx4A LINE L1 -567 6491 6390 5 740 1462 202 4 14 chr1 20384875 20385151 -176810281 + Lx4A LINE L1 6786 7058 0 5 740 21 0 0 0 chr1 20385151 20385172 -176810260 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 21 0 0 0 chr1 20386050 20386071 -176809361 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 232 128 26 0 chr1 20386941 20386980 -176808452 - B1_Mus2 SINE Alu -1 146 107 5 740 251 299 117 36 chr1 20387436 20387547 -176807885 + L2a LINE L2 3285 3404 -22 5 740 12602 99 5 2 chr1 20388871 20391524 -176803908 + L1_Mus3 LINE L1 3950 6611 -27 5 740 534 189 0 0 chr1 20391568 20391679 -176803753 + GA-rich Low_complexity Low_complexity 3 113 0 5 740 655 33 22 0 chr1 20391733 20391823 -176803609 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 5 740 2026 180 217 27 chr1 20393242 20393735 -176801697 + RMER13B LTR ERVK 5 632 -276 5 740 441 0 0 0 chr1 20393735 20393784 -176801648 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 740 237 282 25 25 chr1 20393959 20394039 -176801393 - ID4 SINE ID -2 81 2 5 740 314 321 35 9 chr1 20394043 20394156 -176801276 - MLT1D LTR MaLR -57 448 333 5 740 363 347 77 21 chr1 20394172 20394366 -176801066 - MLT1D LTR MaLR -217 288 84 5 740 228 316 48 48 chr1 20394339 20394373 -176801059 - MLT1D LTR MaLR -372 133 104 5 740 447 292 0 9 chr1 20394373 20394487 -176800945 - PB1D10 SINE Alu 0 117 5 5 740 228 316 48 48 chr1 20394487 20394555 -176800877 - MLT1D LTR MaLR -402 103 31 5 740 537 376 48 10 chr1 20394677 20394884 -176800548 - MER58A DNA MER1_type -3 221 7 5 740 195 392 10 10 chr1 20395780 20395883 -176799549 - L2 LINE L2 -529 2890 2788 5 740 226 292 116 58 chr1 20396470 20396659 -176798773 - MIR SINE MIR -50 212 13 5 740 368 274 12 25 chr1 20396822 20396934 -176798498 + MLT2B4 LTR ERVL 1 105 -410 5 740 32 43 0 0 chr1 20396943 20396989 -176798443 + AT_rich Low_complexity Low_complexity 1 46 0 5 740 21 82 0 0 chr1 20397312 20397361 -176798071 + AT_rich Low_complexity Low_complexity 1 49 0 5 740 601 285 103 29 chr1 20398087 20398329 -176797103 + MLT1K LTR MaLR 335 594 -1 5 740 378 281 52 35 chr1 20398333 20398506 -176796926 - MamRep434 DNA TcMar -100 326 151 5 740 187 318 44 22 chr1 20400642 20400732 -176794700 + L3 LINE CR1 1950 2041 -2448 5 740 265 270 0 43 chr1 20401546 20401639 -176793793 + A-rich Low_complexity Low_complexity 1 89 0 5 740 219 274 123 0 chr1 20402461 20402534 -176792898 - ID4_ SINE ID 0 83 2 5 740 258 56 0 0 chr1 20402679 20402715 -176792717 + (A)n Simple_repeat Simple_repeat 1 36 0 5 740 279 0 0 0 chr1 20402899 20402930 -176792502 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5 740 2944 110 59 2 chr1 20403150 20403311 -176792121 + Lx2B LINE L1 6520 6680 -320 5 740 483 69 0 0 chr1 20403311 20403383 -176792049 + (CCA)n Simple_repeat Simple_repeat 2 73 0 5 740 2944 110 59 2 chr1 20403383 20403676 -176791756 + Lx2B LINE L1 6681 6999 -1 5 740 810 178 234 6 chr1 20403941 20404116 -176791316 + B3 SINE B2 2 216 0 5 740 225 0 0 0 chr1 20404223 20404248 -176791184 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 740 354 45 0 0 chr1 20404248 20404291 -176791141 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 740 934 242 105 52 chr1 20405659 20406060 -176789372 - Lx8 LINE L1 -5 7468 7047 5 740 269 336 0 56 chr1 20406093 20406219 -176789213 + L2a LINE L2 2831 2949 -470 5 740 263 347 134 30 chr1 20406845 20407047 -176788385 + L2a LINE L2 3200 3422 -4 5 740 280 326 37 15 chr1 20410367 20410501 -176784931 + L2a LINE L2 1863 1999 -1420 5 740 1406 11 0 22 chr1 20410619 20410803 -176784629 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 740 369 62 0 0 chr1 20410836 20410884 -176784548 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 740 8507 12 0 0 chr1 20410887 20412209 -176783223 - L1Md_T LINE L1 -1 6581 5260 5 740 368 309 161 46 chr1 20412209 20412775 -176782657 + L2a LINE L2 2101 2731 -688 5 740 207 0 0 0 chr1 20412778 20412801 -176782631 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 740 25613 70 4 1 chr1 20412962 20417311 -176778121 - L1Md_F2 LINE L1 0 6582 2242 5 740 193 366 39 29 chr1 20417495 20417599 -176777833 + L2a LINE L2 3280 3384 -42 5 740 807 202 16 16 chr1 20417767 20417953 -176777479 - B2_Mm2 SINE B2 -8 187 2 5 740 250 228 17 17 chr1 20419571 20419629 -176775803 - MER5A DNA MER1_type -11 178 121 5 740 371 278 112 41 chr1 20420862 20421031 -176774401 - L2 LINE L2 -470 2949 2769 5 740 634 339 64 49 chr1 20421591 20421858 -176773574 + B4 SINE B4 2 272 -20 5 740 497 319 106 76 chr1 20421900 20422144 -176773288 + B4 SINE B4 9 269 -23 5 740 351 0 0 0 chr1 20422144 20422183 -176773249 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 740 497 319 106 76 chr1 20422183 20422213 -176773219 + B4 SINE B4 270 291 -1 5 740 33820 36 1 0 chr1 20422294 20428580 -176766852 + L1Md_T LINE L1 1 5589 -297 5 740 8958 8 0 0 chr1 20428580 20429576 -176765856 + L1Md_T LINE L1 5590 6585 0 5 740 402 57 0 0 chr1 20429648 20429701 -176765731 + (A)n Simple_repeat Simple_repeat 1 53 0 5 740 846 269 114 39 chr1 20430972 20431359 -176764073 + Lx8 LINE L1 7053 7468 -5 5 740 223 255 20 60 chr1 20431809 20431909 -176763523 - MIR SINE MIR -3 259 164 5 740 288 345 18 23 chr1 20432000 20432136 -176763296 - MIRb SINE MIR -126 142 4 5 740 496 284 112 15 chr1 20432828 20433025 -176762407 + ID_B1 SINE B4 1 216 -8 5 740 624 330 33 25 chr1 20433265 20433510 -176761922 + B4A SINE B4 46 292 0 5 740 301 330 0 17 chr1 20433922 20434039 -176761393 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 5 740 757 78 49 0 chr1 20434891 20434993 -176760439 - U6 snRNA snRNA 0 107 1 5 740 182 385 127 9 chr1 20435097 20435317 -176760115 - L2a LINE L2 -24 3402 3157 5 740 270 302 0 34 chr1 20435500 20435589 -176759843 - L2a LINE L2 -526 2893 2808 5 740 818 265 94 19 chr1 20435713 20436021 -176759411 + Lx8 LINE L1 7141 7471 -2 5 740 2165 241 38 51 chr1 20436041 20436614 -176758818 + Lx5 LINE L1 6482 7047 -3 5 740 228 67 0 0 chr1 20436614 20436644 -176758788 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 740 295 385 66 45 chr1 20436649 20436891 -176758541 - MLT1J LTR MaLR -112 400 154 5 740 684 336 10 58 chr1 20437294 20437588 -176757844 - B4 SINE B4 -12 280 1 5 740 318 27 0 0 chr1 20438577 20438614 -176756818 + HAL1-3A_ME LINE L1 1976 2012 -846 5 740 540 130 0 0 chr1 20438614 20438706 -176756726 + (CATA)n Simple_repeat Simple_repeat 1 92 0 5 740 315 49 0 0 chr1 20438868 20438909 -176756523 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 740 202 214 12 12 chr1 20438957 20439042 -176756390 + (CATA)n Simple_repeat Simple_repeat 4 88 0 5 740 233 198 29 10 chr1 20439098 20439200 -176756232 + (CATA)n Simple_repeat Simple_repeat 1 104 0 5 740 225 338 129 15 chr1 20439668 20439800 -176755632 - MIRc SINE MIR -84 184 38 5 740 585 103 37 0 chr1 20441179 20441286 -176754146 + (GGGA)n Simple_repeat Simple_repeat 3 113 0 5 740 240 211 85 34 chr1 20442148 20442207 -176753225 - B1F SINE Alu -4 145 84 5 740 193 349 0 0 chr1 20443114 20443177 -176752255 - MIRc SINE MIR -93 175 113 5 740 396 310 47 0 chr1 20443183 20443312 -176752120 + L2a LINE L2 3008 3142 -284 5 740 279 0 0 0 chr1 20443597 20443628 -176751804 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 740 356 106 30 0 chr1 20443823 20443889 -176751543 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 6 740 501 17 0 0 chr1 20445291 20445349 -176750083 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 6 740 213 289 103 26 chr1 20445908 20446025 -176749407 - L2c LINE L2 -78 3309 3184 6 740 333 285 233 16 chr1 20446954 20447143 -176748289 - L2a LINE L2 -7 3419 3190 6 741 249 293 0 17 chr1 20447553 20447612 -176747820 + MER58B DNA MER1_type 261 318 -23 6 741 507 95 0 0 chr1 20447906 20447980 -176747452 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 741 558 43 0 0 chr1 20449273 20449342 -176746090 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 741 345 337 48 17 chr1 20449440 20449621 -176745811 + MLT1E3 LTR MaLR 358 561 -66 6 741 836 318 39 25 chr1 20450233 20450666 -176744766 + Lx9 LINE L1 7065 7503 -141 6 741 1290 54 0 0 chr1 20452875 20453022 -176742410 + B1_Mus1 SINE Alu 2 148 0 6 741 1087 231 83 28 chr1 20453143 20453432 -176742000 + Lx6 LINE L1 7129 7433 -27 6 741 757 267 33 12 chr1 20453644 20453887 -176741545 + L1M4 LINE L1 5052 5299 -847 6 741 588 195 0 0 chr1 20453939 20454103 -176741329 + GA-rich Low_complexity Low_complexity 2 165 0 6 741 243 269 82 30 chr1 20454824 20454958 -176740474 - MamRep434 DNA TcMar -159 267 127 6 741 217 284 79 11 chr1 20454994 20455083 -176740349 - L2c LINE L2 -12 3375 3281 6 741 647 84 11 0 chr1 20455447 20455542 -176739890 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 6 741 198 298 81 50 chr1 20455671 20455770 -176739662 + L2 LINE L2 1509 1610 -1809 6 741 279 0 0 0 chr1 20456102 20456133 -176739299 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 741 892 167 196 22 chr1 20458252 20458436 -176736996 + B3 SINE B2 1 216 0 6 741 996 296 140 3 chr1 20458884 20459213 -176736219 + MTEa LTR MaLR 1 374 -5 6 741 308 281 83 0 chr1 20459230 20459326 -176736106 - BC1_Mm scRNA scRNA -43 109 6 6 741 216 0 0 0 chr1 20459365 20459389 -176736043 + (ATG)n Simple_repeat Simple_repeat 3 26 0 6 741 342 0 0 0 chr1 20459609 20459647 -176735785 + (TTA)n Simple_repeat Simple_repeat 3 40 0 6 741 3310 42 0 5 chr1 20459647 20460029 -176735403 + L1Md_F2 LINE L1 6191 6570 -12 6 741 4057 45 2 15 chr1 20460042 20460517 -176734915 - L1_Mus1 LINE L1 -11 6556 6088 6 741 876 167 205 46 chr1 20461466 20461661 -176733771 - URR1A DNA MER1_type 0 226 1 6 741 213 159 0 0 chr1 20462221 20462265 -176733167 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 741 366 355 20 74 chr1 20462292 20462428 -176733004 - B4 SINE B4 -18 274 144 6 741 505 0 15 15 chr1 20462428 20462494 -176732938 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 6 741 366 355 20 74 chr1 20462494 20462506 -176732926 - B4 SINE B4 -149 143 134 6 741 681 13 0 0 chr1 20462537 20462615 -176732817 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 741 332 279 29 9 chr1 20463757 20463862 -176731570 + GA-rich Low_complexity Low_complexity 5 111 0 6 741 264 308 73 18 chr1 20464686 20464795 -176730637 + MIRb SINE MIR 83 197 -71 6 741 219 36 0 0 chr1 20465306 20465334 -176730098 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 741 830 266 76 40 chr1 20465346 20465597 -176729835 - B4 SINE B4 -1 291 32 6 741 220 91 45 0 chr1 20467003 20467047 -176728385 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 6 741 690 13 0 0 chr1 20467083 20467162 -176728270 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 741 403 267 18 45 chr1 20467180 20467290 -176728142 - RSINE1 SINE B4 -54 111 5 6 741 288 172 0 0 chr1 20468068 20468126 -176727306 + (CGGG)n Simple_repeat Simple_repeat 3 60 0 6 741 216 103 0 25 chr1 20468640 20468680 -176726752 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 6 741 485 272 26 53 chr1 20468818 20469008 -176726424 + Lx7 LINE L1 7129 7313 -383 6 741 468 0 0 0 chr1 20469011 20469063 -176726369 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 741 6772 70 50 2 chr1 20469564 20470541 -176724891 - L1_Mus1 LINE L1 -645 5922 4903 6 741 4398 60 7 2 chr1 20470542 20471089 -176724343 + L1_Mus1 LINE L1 5905 6454 -113 6 741 869 278 25 71 chr1 20473451 20473734 -176721698 - B4 SINE B4 -21 271 2 6 741 470 164 67 0 chr1 20473759 20473863 -176721569 - Lx9 LINE L1 -10 7634 7524 6 741 327 25 0 0 chr1 20474001 20474041 -176721391 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 6 741 1010 89 89 0 chr1 20474047 20474182 -176721250 - B1_Mus2 SINE Alu 0 147 1 6 741 765 261 42 33 chr1 20474689 20474705 -176720727 - B3 SINE B2 0 216 204 6 741 363 44 0 0 chr1 20474705 20474750 -176720682 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 741 765 261 42 33 chr1 20474750 20474947 -176720485 - B3 SINE B2 -13 203 1 6 741 387 16 31 46 chr1 20475026 20475091 -176720341 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 741 553 276 31 69 chr1 20475127 20475337 -176720095 + B4A SINE B4 1 195 -29 6 741 180 77 0 0 chr1 20475382 20475408 -176720024 + (CATA)n Simple_repeat Simple_repeat 1 26 0 6 741 459 0 0 0 chr1 20475608 20475659 -176719773 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 741 1471 151 0 0 chr1 20475674 20475893 -176719539 - URR1B DNA MER1_type 0 225 7 6 741 39447 8 0 1 chr1 20476474 20482676 -176712756 + L1Md_A LINE L1 1 5586 -297 6 741 9615 3 0 0 chr1 20482676 20483672 -176711760 + L1Md_A LINE L1 5587 6582 0 6 741 204 40 0 0 chr1 20483677 20483702 -176711730 + (A)n Simple_repeat Simple_repeat 1 25 0 6 741 180 258 127 16 chr1 20484849 20484912 -176710520 - MIRm SINE MIR -156 120 51 6 741 194 150 0 24 chr1 20485236 20485277 -176710155 + GA-rich Low_complexity Low_complexity 5 44 0 6 741 311 307 5 15 chr1 20485313 20485436 -176709996 + GA-rich Low_complexity Low_complexity 1 121 0 6 741 656 290 24 29 chr1 20485944 20486150 -176709282 + B4A SINE B4 84 288 -4 6 741 291 250 144 10 chr1 20486218 20486412 -176709020 - RMER12 LTR ERVK -364 958 739 6 741 375 36 0 51 chr1 20486741 20486800 -176708632 + B3 SINE B2 161 216 0 6 741 875 257 97 26 chr1 20487274 20487603 -176707829 + ORR1E LTR MaLR 1 377 -2 6 741 219 36 0 0 chr1 20487820 20487848 -176707584 + (CTG)n Simple_repeat Simple_repeat 2 29 0 6 741 586 306 62 101 chr1 20487945 20488046 -176707386 + B4 SINE B4 1 95 -197 6 741 710 224 42 0 chr1 20488046 20488189 -176707243 + B1_Mur4 SINE Alu 2 150 0 6 741 586 306 62 101 chr1 20488189 20488363 -176707069 + B4 SINE B4 96 265 -27 6 741 351 0 0 0 chr1 20489078 20489117 -176706315 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 741 423 0 0 0 chr1 20489117 20489163 -176706269 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 741 929 160 0 17 chr1 20490152 20490330 -176705102 + Lx2B LINE L1 6825 6999 -1 6 741 473 235 55 106 chr1 20490805 20491051 -176704381 - MIR SINE MIR -11 257 7 6 741 645 326 143 10 chr1 20491141 20491547 -176703885 + Lx8 LINE L1 6867 7326 -147 6 741 324 0 0 0 chr1 20493550 20493586 -176701846 + (TTG)n Simple_repeat Simple_repeat 2 37 0 6 741 293 298 16 66 chr1 20494923 20495045 -176700387 + MIRb SINE MIR 132 247 -21 6 741 576 109 79 0 chr1 20495302 20495403 -176700029 + L1_Mus3 LINE L1 6529 6637 -1 6 741 1847 283 89 40 chr1 20495433 20496165 -176699267 + Lx8 LINE L1 6704 7471 -2 6 741 1235 83 6 3 chr1 20499306 20499622 -176695810 + (GAAA)n Simple_repeat Simple_repeat 1 317 0 6 741 31 26 0 0 chr1 20499727 20499765 -176695667 + AT_rich Low_complexity Low_complexity 1 38 0 6 741 488 256 150 0 chr1 20500000 20500133 -176695299 + B3 SINE B2 60 212 -4 1 741 253 273 155 80 chr1 20500380 20500631 -176694801 - L1M5 LINE L1 -554 5686 5417 2 741 402 287 15 83 chr1 20500980 20501113 -176694319 + B1_Mur1 SINE Alu 26 149 0 3 741 312 325 68 26 chr1 20501615 20501732 -176693700 + MIR3 SINE MIR 2 123 -85 4 741 267 31 0 0 chr1 20501786 20501818 -176693614 + (A)n Simple_repeat Simple_repeat 1 32 0 5 741 201 69 0 0 chr1 20502363 20502382 -176693050 + (TA)n Simple_repeat Simple_repeat 1 19 0 6 741 474 18 0 0 chr1 20502382 20502437 -176692995 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 741 201 69 0 0 chr1 20502437 20502446 -176692986 + (TA)n Simple_repeat Simple_repeat 2 10 0 8 741 853 184 7 33 chr1 20502459 20502611 -176692821 + B1_Mur4 SINE Alu 3 150 0 9 741 919 222 53 29 chr1 20502716 20502962 -176692470 + RMER15 LTR ERVL 1 252 -323 1 741 805 205 54 0 chr1 20502964 20503130 -176692302 + RMER15 LTR ERVL 401 575 0 1 741 794 110 7 0 chr1 20504260 20504406 -176691026 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 1 741 16096 166 26 61 chr1 20504616 20505509 -176689923 + Lx6 LINE L1 1315 2149 -3731 1 741 342 0 0 0 chr1 20505509 20505547 -176689885 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 741 16096 166 26 61 chr1 20505547 20508256 -176687176 + Lx6 LINE L1 2140 4810 -1067 1 741 219 103 0 0 chr1 20508256 20508295 -176687137 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 741 15467 207 102 26 chr1 20508295 20509746 -176685686 + Lx6 LINE L1 4811 6782 -678 1 741 796 291 75 15 chr1 20509838 20510103 -176685329 - B4A SINE B4 -11 281 1 1 741 362 100 0 16 chr1 20510714 20510775 -176684657 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 741 184 100 50 0 chr1 20510816 20510856 -176684576 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 741 569 158 31 12 chr1 20510892 20511052 -176684380 + (TA)n Simple_repeat Simple_repeat 2 164 0 1 741 21 57 0 0 chr1 20511073 20511108 -176684324 + AT_rich Low_complexity Low_complexity 1 35 0 1 741 718 92 23 70 chr1 20511431 20511560 -176683872 + URR1B DNA MER1_type 103 225 0 1 741 733 241 63 15 chr1 20512002 20512208 -176683224 + B3 SINE B2 1 216 0 1 741 207 114 0 0 chr1 20512605 20512640 -176682792 + (T)n Simple_repeat Simple_repeat 1 35 0 2 741 323 212 132 132 chr1 20514433 20514522 -176680910 + RSINE1 SINE B4 52 148 -17 2 741 207 0 0 0 chr1 20514522 20514545 -176680887 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 741 323 212 132 132 chr1 20514545 20514569 -176680863 + RSINE1 SINE B4 149 165 0 2 741 7996 28 0 0 chr1 20514761 20515633 -176679799 + L1Md_A LINE L1 5711 6582 0 2 741 36140 39 4 8 chr1 20515646 20520826 -176674606 + L1Md_T LINE L1 417 5586 -297 2 741 9072 33 0 0 chr1 20520826 20521822 -176673610 + L1Md_T LINE L1 5587 6582 0 2 741 381 43 0 0 chr1 20521851 20521898 -176673534 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2 741 272 197 13 13 chr1 20521898 20521975 -176673457 - Lx4B LINE L1 -20 7038 6962 2 741 267 31 0 0 chr1 20522221 20522253 -176673179 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 741 780 239 105 11 chr1 20522828 20523018 -176672414 - B3 SINE B2 -8 208 1 2 741 998 267 81 10 chr1 20525224 20525519 -176669913 - MTD LTR MaLR -1 418 103 2 741 743 274 12 23 chr1 20525519 20525714 -176669718 + B3 SINE B2 20 198 0 3 741 344 278 10 10 chr1 20525707 20525805 -176669627 - MTD LTR MaLR -299 120 23 2 741 602 271 6 70 chr1 20526159 20526330 -176669102 + RSINE1 SINE B4 2 161 -4 3 741 845 272 40 32 chr1 20526343 20526590 -176668842 - Lx5 LINE L1 0 7050 6802 3 741 243 352 28 19 chr1 20526778 20526885 -176668547 + MIR SINE MIR 41 148 -114 3 741 23 0 0 0 chr1 20526959 20526982 -176668450 + AT_rich Low_complexity Low_complexity 1 23 0 3 741 343 292 113 0 chr1 20527110 20527216 -176668216 + B1F SINE Alu 19 136 -13 3 741 387 0 0 0 chr1 20527216 20527259 -176668173 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 3 741 244 242 158 20 chr1 20527715 20527816 -176667616 + HAL1 LINE L1 1558 1672 -835 3 741 983 336 49 20 chr1 20527880 20528369 -176667063 + Lx8 LINE L1 6964 7466 -7 3 741 4906 74 0 39 chr1 20528517 20529152 -176666280 + L1_Mus2 LINE L1 5956 6565 -1 3 741 342 0 0 0 chr1 20530060 20530098 -176665334 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 741 487 231 83 135 chr1 20531645 20531875 -176663557 + Lx5 LINE L1 6833 7050 0 4 741 30 83 0 0 chr1 20532003 20532075 -176663357 + AT_rich Low_complexity Low_complexity 1 72 0 4 741 207 0 0 0 chr1 20532324 20532347 -176663085 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 741 254 246 0 15 chr1 20532347 20532413 -176663019 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 741 569 343 80 25 chr1 20532425 20532700 -176662732 - B4A SINE B4 -2 290 1 4 741 771 274 32 5 chr1 20532826 20533046 -176662386 + L1M2 LINE L1 4747 4972 -1171 4 741 418 225 36 0 chr1 20533147 20533258 -176662174 + L1M2 LINE L1 4955 5069 -1074 4 741 280 149 235 10 chr1 20533266 20533368 -176662064 + Lx9 LINE L1 7520 7644 0 4 741 317 303 106 8 chr1 20533401 20533510 -176661922 + L1M2 LINE L1 5086 5207 -936 4 741 1073 59 81 0 chr1 20533510 20533646 -176661786 + B1_Mm SINE Alu 1 147 0 4 741 317 303 106 8 chr1 20533646 20533659 -176661773 + L1M2 LINE L1 5208 5220 -923 4 741 401 0 0 0 chr1 20533711 20533759 -176661673 + L1_Mus2 LINE L1 6519 6566 0 4 741 316 236 38 22 chr1 20533811 20533982 -176661450 + L1M2 LINE L1 5265 5459 -721 4 741 232 434 0 0 chr1 20534403 20534502 -176660930 - L4 LINE RTE -843 1186 1088 5 741 464 285 103 14 chr1 20534627 20534773 -176660659 - MER5A1 DNA MER1_type -7 159 1 5 741 3054 188 48 24 chr1 20535501 20536274 -176659158 + Lx4B LINE L1 6198 6973 -27 5 741 243 0 0 0 chr1 20536277 20536304 -176659128 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 741 460 241 5 42 chr1 20537048 20537239 -176658193 + RMER17C LTR ERVK 92 275 -135 5 741 198 0 0 0 chr1 20537893 20537915 -176657517 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 741 749 137 405 0 chr1 20537937 20538090 -176657342 + B3 SINE B2 2 216 0 5 741 445 259 7 71 chr1 20539087 20539228 -176656204 + RSINE1 SINE B4 14 145 -20 5 741 211 185 18 18 chr1 20539431 20539486 -176655946 + (TAA)n Simple_repeat Simple_repeat 1 55 0 5 741 24 0 0 0 chr1 20539658 20539682 -176655750 + AT_rich Low_complexity Low_complexity 1 24 0 5 741 463 109 225 8 chr1 20540112 20540232 -176655200 + Lx5 LINE L1 6905 7050 0 6 741 195 372 96 21 chr1 20541715 20541902 -176653530 - MIRc SINE MIR -64 204 4 6 741 3074 59 55 23 chr1 20542667 20543065 -176652367 + RLTR10A LTR ERVK 1 411 0 6 741 351 282 99 20 chr1 20543182 20543352 -176652080 + MLT1B LTR MaLR 272 488 -17 6 741 281 325 108 42 chr1 20544164 20544331 -176651101 + MLT1A0 LTR MaLR 6 183 -182 6 741 213 303 174 47 chr1 20544904 20545053 -176650379 + MER5A DNA MER1_type 22 189 0 6 741 807 230 0 7 chr1 20546042 20546182 -176649250 - B1_Mur2 SINE Alu -7 142 4 6 741 193 43 0 0 chr1 20546210 20546233 -176649199 + L2b LINE L2 3330 3352 -23 6 741 300 172 0 0 chr1 20546427 20546485 -176648947 + (ATGGTG)n Simple_repeat Simple_repeat 6 63 0 6 741 1155 131 135 43 chr1 20546812 20547019 -176648413 - URR1A DNA MER1_type 0 226 1 6 741 455 273 11 125 chr1 20547394 20547570 -176647862 + RSINE1 SINE B4 10 165 0 7 741 240 59 0 0 chr1 20548968 20549002 -176646430 + (CAGT)n Simple_repeat Simple_repeat 2 35 0 7 741 460 290 46 40 chr1 20550108 20550259 -176645173 - MER20 DNA MER1_type -57 162 11 7 741 1015 219 40 0 chr1 20550492 20550693 -176644739 + B3 SINE B2 1 209 -7 7 741 4145 7 0 9 chr1 20550725 20551167 -176644265 + L1Md_T LINE L1 6145 6582 0 7 741 21 0 0 0 chr1 20551215 20551236 -176644196 + AT_rich Low_complexity Low_complexity 1 21 0 7 741 1341 293 97 29 chr1 20551246 20551896 -176643536 + Lx9 LINE L1 6924 7617 -27 7 741 291 325 77 66 chr1 20552642 20552823 -176642609 - Charlie17a DNA MER1_type -33 186 4 7 741 577 242 176 22 chr1 20552864 20553046 -176642386 - B3 SINE B2 -6 210 1 7 741 271 254 0 17 chr1 20553186 20553246 -176642186 + B4A SINE B4 88 146 -146 7 741 482 202 106 0 chr1 20553193 20553287 -176642145 + PB1 SINE Alu 10 113 -14 8 741 405 116 0 0 chr1 20554688 20554757 -176640675 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 741 497 208 8 0 chr1 20554757 20554776 -176640656 + polypurine Low_complexity Low_complexity 4 22 0 8 741 1082 125 6 0 chr1 20554776 20554952 -176640480 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 8 741 497 208 8 0 chr1 20554952 20555052 -176640380 + GA-rich Low_complexity Low_complexity 23 122 0 8 741 894 204 97 48 chr1 20555066 20555272 -176640160 + B3 SINE B2 1 216 0 8 741 482 282 0 0 chr1 20555385 20555495 -176639937 + RSINE1 SINE B4 54 163 -2 8 741 546 29 0 0 chr1 20556129 20556197 -176639235 + (TC)n Simple_repeat Simple_repeat 2 69 0 8 741 359 392 40 7 chr1 20556476 20556625 -176638807 + MIRb SINE MIR 22 175 -93 8 741 209 33 33 0 chr1 20557145 20557175 -176638257 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 8 741 200 349 37 28 chr1 20558379 20558488 -176636944 + MIRb SINE MIR 56 165 -103 9 741 428 298 61 8 chr1 20558648 20558780 -176636652 - MER20 DNA MER1_type -2 217 79 9 741 264 30 0 0 chr1 20558818 20558851 -176636581 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 741 183 42 0 0 chr1 20560047 20560071 -176635361 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 741 525 281 74 56 chr1 20560726 20560888 -176634544 + RSINE1 SINE B4 1 165 0 9 741 381 146 40 8 chr1 20560888 20561012 -176634420 + (CA)n Simple_repeat Simple_repeat 1 128 0 9 741 323 45 0 22 chr1 20561040 20561086 -176634346 + (CATA)n Simple_repeat Simple_repeat 2 46 0 9 741 491 0 17 0 chr1 20561139 20561198 -176634234 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 9 741 1239 68 0 0 chr1 20561224 20561371 -176634061 + B1_Mus2 SINE Alu 1 147 0 9 741 180 0 0 0 chr1 20561371 20561391 -176634041 + (A)n Simple_repeat Simple_repeat 1 20 0 9 741 788 234 47 21 chr1 20562694 20562886 -176632546 - B3A SINE B2 0 198 2 1 741 885 291 76 4 chr1 20563373 20563649 -176631783 - Lx8 LINE L1 -355 7118 6823 1 741 2623 63 31 0 chr1 20563873 20564190 -176631242 + ORR1A2 LTR MaLR 1 327 0 1 741 272 312 26 43 chr1 20564272 20564389 -176631043 + PB1D10 SINE Alu 1 115 -2 1 741 39334 6 0 0 chr1 20564576 20570138 -176625294 + L1Md_A LINE L1 25 5586 -297 1 741 9626 3 0 0 chr1 20570138 20571134 -176624298 + L1Md_A LINE L1 5587 6582 0 1 741 1370 170 9 4 chr1 20571198 20571423 -176624009 + URR1A DNA MER1_type 1 226 0 1 741 639 215 0 69 chr1 20571617 20571762 -176623670 + B1_Mus2 SINE Alu 1 135 -12 1 741 540 0 0 0 chr1 20571762 20571822 -176623610 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 1 741 3253 20 0 3 chr1 20572818 20573165 -176622267 + ORR1A0 LTR MaLR 1 346 0 1 741 34 0 0 0 chr1 20573621 20573655 -176621777 + AT_rich Low_complexity Low_complexity 1 34 0 1 741 420 182 6 78 chr1 20574538 20574717 -176620715 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 1 741 192 97 0 0 chr1 20576993 20577024 -176618408 + (A)n Simple_repeat Simple_repeat 1 31 0 1 741 642 26 0 0 chr1 20578006 20578082 -176617350 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 1 741 400 168 10 10 chr1 20578082 20578184 -176617248 + GA-rich Low_complexity Low_complexity 1 102 0 1 92 1034 107 6 17 chr1 20578184 20578364 -176617068 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 742 637 316 70 13 chr1 20578832 20579176 -176616256 + L1MA6 LINE L1 5932 6278 -13 1 742 1484 290 89 34 chr1 20579178 20579663 -176615769 + Lx8 LINE L1 6828 7318 -155 1 742 378 0 0 0 chr1 20579663 20579705 -176615727 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 742 1484 290 89 34 chr1 20579705 20579804 -176615628 + Lx8 LINE L1 7319 7443 -30 1 742 211 381 0 0 chr1 20580041 20580104 -176615328 + PB1 SINE Alu 1 63 -64 1 742 185 0 0 39 chr1 20580242 20580268 -176615164 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1 742 324 0 0 0 chr1 20580877 20580913 -176614519 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 742 676 264 18 70 chr1 20581395 20581566 -176613866 + RSINE1 SINE B4 3 164 -1 1 742 341 153 14 0 chr1 20581705 20581777 -176613655 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 742 1316 82 11 0 chr1 20581890 20582072 -176613360 - B2_Mm1t SINE B2 0 193 10 1 742 196 357 32 105 chr1 20582297 20582352 -176613080 + MIR SINE MIR 45 99 -163 1 742 3644 33 2 0 chr1 20582352 20582747 -176612685 + MTA_Mm LTR MaLR 1 396 0 1 742 1084 169 55 101 chr1 20582749 20582986 -176612446 + URR1A DNA MER1_type 1 226 0 1 742 196 357 32 105 chr1 20582986 20583146 -176612286 + MIR SINE MIR 100 247 -15 1 742 2462 186 134 16 chr1 20583276 20583784 -176611648 + RLTR20D LTR ERVK 1 568 0 1 742 7937 55 12 12 chr1 20584424 20585614 -176609818 - L1Md_F2 LINE L1 -4 6578 5384 1 742 17365 155 7 156 chr1 20585651 20593198 -176602234 + L1_Mus1 LINE L1 217 6566 -1 1 742 3214 61 5 32 chr1 20593413 20593820 -176601612 - MTA_Mm LTR MaLR 0 396 1 1 742 463 312 162 43 chr1 20594005 20594239 -176601193 + B4A SINE B4 13 274 -18 1 742 401 0 20 0 chr1 20594243 20594292 -176601140 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 742 2765 101 106 22 chr1 20594369 20594421 -176601011 - Lx3B LINE L1 0 6973 6909 1 742 729 34 0 0 chr1 20594421 20594509 -176600923 + (TCC)n Simple_repeat Simple_repeat 3 90 0 1 742 2765 101 106 22 chr1 20594509 20594873 -176600559 - Lx3B LINE L1 -65 6908 6523 1 742 1944 152 55 6 chr1 20595019 20595344 -176600088 + ORR1A1 LTR MaLR 6 346 0 1 742 261 0 0 0 chr1 20596280 20596309 -176599123 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 742 207 0 0 0 chr1 20596386 20596409 -176599023 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 742 2803 70 51 0 chr1 20597559 20597932 -176597500 + MTB LTR MaLR 1 392 -8 1 742 234 231 106 15 chr1 20598089 20598155 -176597277 + MIRb SINE MIR 35 106 -162 1 742 216 231 0 0 chr1 20598719 20598797 -176596635 + CT-rich Low_complexity Low_complexity 3 80 0 1 742 914 218 20 4 chr1 20598827 20599196 -176596236 + L1_Mur3 LINE L1 1056 1435 -4445 1 742 922 156 0 22 chr1 20599202 20599386 -176596046 + GA-rich Low_complexity Low_complexity 1 180 0 1 742 215 250 15 0 chr1 20599452 20599520 -176595912 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 742 6272 199 69 39 chr1 20599531 20599546 -176595886 + L1_Mur3 LINE L1 1472 1486 -4394 1 742 1112 112 0 0 chr1 20599546 20599689 -176595743 + B1_Mus1 SINE Alu 1 143 -5 1 742 6272 199 69 39 chr1 20599689 20601250 -176594182 + L1_Mur3 LINE L1 1487 3095 -2785 1 742 2608 145 15 0 chr1 20601521 20601929 -176593503 + Lx2 LINE L1 6583 6996 -1 1 742 1550 192 48 45 chr1 20601960 20602292 -176593140 + Lx9 LINE L1 7133 7465 -179 1 742 450 0 0 0 chr1 20602293 20602343 -176593089 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 742 382 181 84 19 chr1 20602346 20602453 -176592979 + Lx9 LINE L1 7524 7637 -7 1 742 257 277 71 12 chr1 20603622 20603706 -176591726 - MER5A DNA MER1_type -10 179 91 1 742 856 94 31 16 chr1 20604003 20604132 -176591300 + L1_Mus1 LINE L1 6430 6560 -7 1 742 1251 102 28 11 chr1 20604132 20604310 -176591122 - B2_Mm2 SINE B2 -13 182 2 1 742 200 176 0 0 chr1 20605623 20605657 -176589775 + C-rich Low_complexity Low_complexity 2 35 0 1 742 270 0 0 0 chr1 20605659 20605689 -176589743 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 742 1226 258 12 41 chr1 20605691 20606034 -176589398 + Lx9 LINE L1 7005 7337 -307 1 742 22 70 0 0 chr1 20606154 20606197 -176589235 + AT_rich Low_complexity Low_complexity 1 43 0 1 742 189 0 0 0 chr1 20608078 20608099 -176587333 + (CTAG)n Simple_repeat Simple_repeat 3 23 0 1 742 216 97 0 0 chr1 20608293 20608324 -176587108 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 1 742 372 362 80 20 chr1 20608585 20608785 -176586647 + LTR33 LTR ERVL 296 507 -8 1 742 5360 116 107 7 chr1 20609588 20610548 -176584884 + RLTR21 LTR ERVK 1 1056 -516 1 742 245 347 11 36 chr1 20611438 20611578 -176583854 + MLT1G LTR MaLR 3 136 -419 1 742 340 300 12 0 chr1 20611619 20611699 -176583733 - ID4_ SINE ID -1 82 2 1 742 324 317 16 47 chr1 20611707 20611836 -176583596 - PB1 SINE Alu -2 125 1 1 742 1081 258 90 10 chr1 20612131 20612421 -176583011 - MTE2b LTR MaLR -66 313 1 1 742 934 171 7 0 chr1 20613056 20613202 -176582230 + B1_Mus1 SINE Alu 2 148 0 1 742 251 381 125 0 chr1 20613622 20613798 -176581634 - Charlie17a DNA MER1_type -21 198 1 1 742 1275 54 0 0 chr1 20613815 20613963 -176581469 + B1_Mus1 SINE Alu 1 148 0 1 742 1347 72 0 0 chr1 20614211 20614391 -176581041 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 742 492 62 0 0 chr1 20614391 20614455 -176580977 + (TCC)n Simple_repeat Simple_repeat 3 66 0 1 742 5083 172 79 48 chr1 20615024 20615043 -176580389 + L1_Mur3 LINE L1 4604 4624 -1256 1 742 375 23 0 0 chr1 20615043 20615087 -176580345 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 742 5083 172 79 48 chr1 20615087 20615181 -176580251 + L1_Mur3 LINE L1 4625 4726 -1154 1 742 405 0 0 0 chr1 20615181 20615226 -176580206 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1 742 5083 172 79 48 chr1 20615226 20616268 -176579164 + L1_Mur3 LINE L1 4727 5794 -86 1 742 3040 143 18 58 chr1 20616262 20617077 -176578355 - L1Md_F LINE L1 -4460 1423 613 1 742 2020 58 0 0 chr1 20617089 20617331 -176578101 + L1Md_F2 LINE L1 5345 5586 -297 1 742 7806 80 13 5 chr1 20617332 20618317 -176577115 + L1Md_F2 LINE L1 5588 6580 -2 1 742 25 0 0 0 chr1 20618322 20618347 -176577085 + AT_rich Low_complexity Low_complexity 1 25 0 1 742 7895 211 64 36 chr1 20618382 20620091 -176575341 + Lx7 LINE L1 5781 7526 -170 1 742 552 30 0 0 chr1 20620091 20620157 -176575275 + (TTTTG)n Simple_repeat Simple_repeat 4 69 0 1 742 7895 211 64 36 chr1 20620157 20620310 -176575122 + Lx7 LINE L1 7527 7695 -1 1 742 448 281 134 25 chr1 20620346 20620503 -176574929 + MLT1D LTR MaLR 1 174 -331 1 742 267 178 0 0 chr1 20621149 20621194 -176574238 - ID4 SINE ID -37 46 2 1 742 1521 250 51 30 chr1 20621257 20621337 -176574095 + MTEa LTR MaLR 1 80 -299 1 742 477 0 0 0 chr1 20621337 20621390 -176574042 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 742 1521 250 51 30 chr1 20621390 20621680 -176573752 + MTEa LTR MaLR 81 377 -2 1 742 242 367 45 9 chr1 20622220 20622330 -176573102 - MIR3 SINE MIR -46 162 49 1 742 602 37 0 12 chr1 20622415 20622497 -176572935 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 742 218 167 0 27 chr1 20622634 20622671 -176572761 + B4 SINE B4 47 82 -210 1 742 4202 39 0 18 chr1 20622827 20623320 -176572112 - L1Md_F3 LINE L1 -9 6575 6092 1 742 21 0 0 0 chr1 20623978 20623999 -176571433 + AT_rich Low_complexity Low_complexity 1 21 0 1 742 180 125 0 0 chr1 20624074 20624106 -176571326 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 742 737 298 48 51 chr1 20624518 20624851 -176570581 - MER2 DNA MER2_type -3 342 11 1 742 492 346 117 43 chr1 20625038 20625570 -176569862 + L2 LINE L2 2293 2863 -556 1 742 325 332 189 33 chr1 20625600 20626029 -176569403 - L2a LINE L2 -2 3424 2929 1 742 22 35 0 0 chr1 20626618 20626647 -176568785 + AT_rich Low_complexity Low_complexity 1 29 0 1 742 236 363 168 14 chr1 20626811 20627163 -176568269 - L2a LINE L2 -853 2566 2161 1 742 10556 29 7 16 chr1 20627693 20628964 -176566468 + L1Md_T LINE L1 4327 5586 -297 1 742 9105 27 0 0 chr1 20628964 20629955 -176565477 + L1Md_T LINE L1 5587 6577 -5 1 742 1390 205 167 6 chr1 20630177 20630501 -176564931 + RLTR14 LTR ERV1 3 378 -4 1 742 242 302 14 92 chr1 20630874 20631016 -176564416 - L1M3 LINE L1 -1210 4930 4800 1 742 333 68 0 0 chr1 20631047 20631091 -176564341 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 742 399 312 64 49 chr1 20631289 20631367 -176564065 - L1MEc LINE L1 -6077 323 247 1 742 396 0 0 0 chr1 20631367 20631411 -176564021 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 742 399 312 64 49 chr1 20631411 20631598 -176563834 - L1MEc LINE L1 -6154 246 54 1 742 250 386 69 6 chr1 20631633 20631792 -176563640 + L2c LINE L2 3002 3170 -217 1 742 333 0 0 0 chr1 20631870 20631907 -176563525 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 742 2078 158 40 21 chr1 20631911 20632286 -176563146 - ORR1B1 LTR MaLR -8 386 5 1 742 648 195 56 16 chr1 20632304 20632429 -176563003 - B1_Mur1 SINE Alu -18 131 2 1 742 39843 37 8 0 chr1 20632471 20638612 -176556820 - L1Md_T LINE L1 0 6582 394 2 742 1610 243 93 23 chr1 20638709 20639223 -176556209 - Lx8 LINE L1 -1 7472 6923 2 742 264 268 296 10 chr1 20639464 20639660 -176555772 - Lx8 LINE L1 -4 7469 7218 2 742 7715 85 25 1 chr1 20639655 20641144 -176554288 + L1_Mus3 LINE L1 5115 6637 -1 2 742 1864 303 67 68 chr1 20641136 20641333 -176554099 - Lx8 LINE L1 -234 7239 7018 2 742 2405 95 31 0 chr1 20641333 20641650 -176553782 - ORR1A2 LTR MaLR 0 327 1 2 742 1864 303 67 68 chr1 20641650 20642334 -176553098 - Lx8 LINE L1 -456 7017 6359 2 742 223 367 21 48 chr1 20642792 20642932 -176552500 + L2c LINE L2 3257 3370 -5 1 742 2249 233 56 15 chr1 20644692 20645171 -176550261 + Lx6 LINE L1 6958 7456 -4 2 742 299 268 80 108 chr1 20645321 20645497 -176549935 - LTR88b LTR Gypsy? 0 837 667 2 742 432 0 0 0 chr1 20645618 20645666 -176549766 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 742 409 341 79 54 chr1 20646388 20646704 -176548728 + Charlie2b DNA MER1_type 286 609 -2173 2 742 335 324 161 22 chr1 20647370 20647550 -176547882 - MLT1F2 LTR MaLR -255 305 101 2 742 279 303 65 8 chr1 20647659 20647782 -176547650 - L2a LINE L2 -242 3184 3055 2 742 668 118 18 0 chr1 20647965 20648075 -176547357 + Lx9 LINE L1 7520 7631 -13 2 742 261 0 0 0 chr1 20648077 20648106 -176547326 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 742 30919 118 31 16 chr1 20648536 20654860 -176540572 + L1_Mus3 LINE L1 234 6638 0 2 742 1239 74 5 9 chr1 20655142 20655362 -176540070 + (GAAA)n Simple_repeat Simple_repeat 1 219 0 2 742 257 291 24 48 chr1 20655614 20655697 -176539735 - AmnSINE1 SINE SINE -487 88 8 2 742 862 272 252 15 chr1 20655701 20656191 -176539241 + Lx9 LINE L1 7052 7642 -2 2 742 22 0 0 0 chr1 20656219 20656241 -176539191 + AT_rich Low_complexity Low_complexity 1 22 0 2 742 29 70 0 0 chr1 20657071 20657128 -176538304 + AT_rich Low_complexity Low_complexity 1 57 0 2 742 229 189 42 102 chr1 20657152 20657270 -176538162 - Charlie2b DNA MER1_type -75 2707 2597 2 742 198 0 0 0 chr1 20657344 20657366 -176538066 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 742 35 0 0 0 chr1 20658471 20658506 -176536926 + AT_rich Low_complexity Low_complexity 1 35 0 2 742 893 199 14 0 chr1 20658996 20659142 -176536290 + B1_Mur4 SINE Alu 2 149 -1 2 742 217 183 33 0 chr1 20659142 20659202 -176536230 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 2 742 486 33 0 0 chr1 20660203 20660263 -176535169 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 742 915 86 7 19 chr1 20660293 20660447 -176534985 + (GGAGA)n Simple_repeat Simple_repeat 1 152 0 2 742 481 306 30 0 chr1 20662527 20662661 -176532771 + MER5A DNA MER1_type 1 138 -51 2 742 294 247 13 13 chr1 20663121 20663199 -176532233 + PB1D10 SINE Alu 34 111 -6 2 742 981 49 0 0 chr1 20663922 20664045 -176531387 + (TC)n Simple_repeat Simple_repeat 1 123 0 2 742 527 285 30 0 chr1 20664074 20664239 -176531193 - Lx7 LINE L1 -389 7307 7138 2 742 21 0 0 0 chr1 20664244 20664265 -176531167 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 22 35 0 0 chr1 20665389 20665418 -176530014 + AT_rich Low_complexity Low_complexity 1 29 0 2 742 253 186 0 0 chr1 20665480 20665523 -176529909 - MIRb SINE MIR -103 165 123 2 742 1284 89 0 0 chr1 20665784 20665964 -176529468 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 742 243 0 0 0 chr1 20666538 20666565 -176528867 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 742 1157 76 6 25 chr1 20666565 20666727 -176528705 - B2_Mm1a SINE B2 -33 160 2 2 742 4270 63 27 4 chr1 20666727 20667280 -176528152 - L1Md_F2 LINE L1 -43 6539 5974 2 742 273 57 0 0 chr1 20667684 20667719 -176527713 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 2 742 21 36 0 0 chr1 20667985 20668013 -176527419 + AT_rich Low_complexity Low_complexity 1 28 0 2 742 833 123 0 7 chr1 20668446 20668585 -176526847 + (GGA)n Simple_repeat Simple_repeat 3 140 0 2 742 1473 28 0 0 chr1 20668585 20668763 -176526669 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2 742 460 269 126 0 chr1 20670179 20670346 -176525086 + MER20 DNA MER1_type 32 219 0 2 742 487 29 29 0 chr1 20671414 20671483 -176523949 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 2 742 200 35 35 0 chr1 20671529 20671558 -176523874 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 742 930 141 0 0 chr1 20671560 20671695 -176523737 - B1_Mus1 SINE Alu -12 136 2 2 742 236 303 53 0 chr1 20671942 20672018 -176523414 - MER5A DNA MER1_type 0 189 110 2 742 329 340 203 9 chr1 20672188 20672405 -176523027 + L1ME3B LINE L1 5745 6003 -237 2 742 23 0 0 0 chr1 20672661 20672684 -176522748 + AT_rich Low_complexity Low_complexity 1 23 0 2 742 368 192 0 10 chr1 20673363 20673380 -176522052 + (TA)n Simple_repeat Simple_repeat 1 17 0 2 742 393 22 0 0 chr1 20673380 20673426 -176522006 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 742 368 192 0 10 chr1 20673426 20673508 -176521924 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 742 1311 103 32 16 chr1 20674745 20674932 -176520500 + B2_Mm2 SINE B2 2 191 -4 2 742 225 200 18 0 chr1 20674936 20674991 -176520441 + B3 SINE B2 161 216 0 2 742 3465 54 0 7 chr1 20675000 20675461 -176519971 - L1_Mus1 LINE L1 0 6567 6144 2 742 213 269 34 4 chr1 20676428 20676494 -176518938 - B1_Mus1 SINE Alu -77 72 7 2 742 300 362 31 73 chr1 20676635 20676826 -176518606 - B4 SINE B4 -75 217 35 2 742 1233 41 0 0 chr1 20677005 20677152 -176518280 + B1_Mus2 SINE Alu 1 147 0 2 742 210 105 0 0 chr1 20677152 20677190 -176518242 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2 742 230 281 0 0 chr1 20677314 20677403 -176518029 + T-rich Low_complexity Low_complexity 1 89 0 2 742 350 288 0 75 chr1 20677404 20677420 -176518012 - PB1D10 SINE Alu 0 117 7 2 742 477 269 0 0 chr1 20677420 20677524 -176517908 - ID_B1 SINE B4 -33 191 88 2 742 873 68 0 0 chr1 20678047 20678164 -176517268 + (TC)n Simple_repeat Simple_repeat 1 117 0 2 742 402 242 0 0 chr1 20678433 20678594 -176516838 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 742 543 157 24 12 chr1 20678597 20678765 -176516667 + (TCTCTG)n Simple_repeat Simple_repeat 3 172 0 2 742 1243 266 97 43 chr1 20678801 20679244 -176516188 - Lx8 LINE L1 -326 7147 6681 2 742 204 146 49 0 chr1 20679384 20679425 -176516007 + CT-rich Low_complexity Low_complexity 1 43 0 2 742 396 0 0 0 chr1 20679428 20679472 -176515960 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 742 791 289 54 30 chr1 20680153 20680449 -176514983 - L1_Rod LINE L1 -668 5179 4877 2 742 993 313 64 38 chr1 20680459 20681096 -176514336 + L1MA4A LINE L1 5271 5924 -379 2 742 680 77 10 0 chr1 20681236 20681340 -176514092 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 742 585 0 0 0 chr1 20681922 20681987 -176513445 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 742 291 146 0 0 chr1 20682229 20682284 -176513148 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 2 742 790 243 32 0 chr1 20682294 20682479 -176512953 - B3 SINE B2 -25 191 1 2 742 355 107 27 0 chr1 20682827 20682902 -176512530 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 742 459 0 0 0 chr1 20682911 20682962 -176512470 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 742 223 290 10 29 chr1 20683095 20683198 -176512234 + GA-rich Low_complexity Low_complexity 3 103 0 2 742 320 200 9 0 chr1 20683214 20683319 -176512113 + GA-rich Low_complexity Low_complexity 1 106 0 2 742 1040 118 12 0 chr1 20683936 20684097 -176511335 + RLTR23 LTR ERV1 1 163 -267 2 742 1823 133 12 9 chr1 20684225 20684552 -176510880 - ORR1A4 LTR MaLR -1 328 1 2 742 1023 132 0 6 chr1 20684907 20685074 -176510358 + B2_Mm2 SINE B2 1 166 -29 2 742 778 236 103 20 chr1 20685123 20685318 -176510114 - B3 SINE B2 0 216 6 2 742 537 187 0 0 chr1 20686008 20686147 -176509285 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 742 270 279 19 0 chr1 20686218 20686322 -176509110 - L1M5 LINE L1 -736 5458 5353 2 742 207 250 9 28 chr1 20686493 20686600 -176508832 + CT-rich Low_complexity Low_complexity 2 106 0 2 742 233 328 37 22 chr1 20687175 20687309 -176508123 + L1M5 LINE L1 5600 5735 -459 2 742 662 283 32 64 chr1 20687382 20687665 -176507767 + B4A SINE B4 1 274 -18 2 742 458 198 168 0 chr1 20687803 20687904 -176507528 - B3 SINE B2 -98 118 1 2 742 378 150 28 0 chr1 20688799 20688879 -176506553 - MTC LTR MaLR -125 294 213 2 742 1995 181 3 25 chr1 20688882 20689051 -176506381 - ORR1C2 LTR MaLR 0 384 219 2 742 2360 180 55 32 chr1 20689051 20689466 -176505966 + RLTR16 LTR ERVK 1 402 -103 2 742 279 0 0 0 chr1 20689466 20689497 -176505935 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 742 2360 180 55 32 chr1 20689497 20689575 -176505857 + RLTR16 LTR ERVK 403 504 -1 2 742 1995 181 3 25 chr1 20689575 20689797 -176505635 - ORR1C2 LTR MaLR -166 218 2 2 742 222 184 0 0 chr1 20689797 20689835 -176505597 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2 742 1140 166 18 22 chr1 20689835 20690057 -176505375 - MTC LTR MaLR -200 221 1 2 742 1733 202 22 42 chr1 20690492 20690895 -176504537 - RMER20B LTR ERVK -213 414 20 2 742 231 213 21 0 chr1 20691660 20691707 -176503725 - L1MB2 LINE L1 -125 6046 5999 2 742 3585 15 2 0 chr1 20692435 20692830 -176502602 + MTA_Mm LTR MaLR 1 396 0 2 742 9326 32 4 1 chr1 20692830 20693925 -176501507 + MTA_Mm-int LTR MaLR 1 1098 0 2 742 3578 15 2 0 chr1 20693925 20694320 -176501112 + MTA_Mm LTR MaLR 1 396 0 2 742 353 322 38 33 chr1 20694695 20694878 -176500554 + Charlie5 DNA MER1_type 11 194 -2430 2 742 278 256 105 0 chr1 20694994 20695080 -176500352 + PB1D7 SINE Alu 17 111 -9 2 742 38383 12 5 15 chr1 20695491 20699567 -176495865 + L1Md_A LINE L1 415 4444 -1439 2 742 7997 5 0 0 chr1 20699567 20700435 -176494997 + L1Md_T LINE L1 5715 6582 0 2 742 38383 9 4 7 chr1 20700435 20701577 -176493855 + L1Md_A LINE L1 4445 5586 -297 2 742 8936 14 0 1 chr1 20701578 20702574 -176492858 + L1Md_A LINE L1 5588 6582 0 2 742 205 272 68 60 chr1 20702853 20702986 -176492446 - L2b LINE L2 0 3375 3242 2 742 1085 108 52 36 chr1 20703488 20703681 -176491751 - RMER1A Other Other 0 1030 835 3 742 1356 139 0 18 chr1 20703681 20703908 -176491524 + RLTR20B2 LTR ERVK 1 223 -337 3 742 1237 158 53 20 chr1 20703921 20704067 -176491365 + RLTR20B2 LTR ERVK 308 452 -108 3 742 288 0 0 0 chr1 20704067 20704099 -176491333 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 742 1237 158 53 20 chr1 20704099 20704197 -176491235 + RLTR20B2 LTR ERVK 453 558 -2 3 742 2983 168 58 6 chr1 20704199 20704713 -176490719 - RMER1A Other Other -192 838 298 3 742 328 266 50 14 chr1 20704775 20704882 -176490550 - PB1D10 SINE Alu -37 112 7 3 742 474 207 234 15 chr1 20705039 20705176 -176490256 + RLTR20B2 LTR ERVK 394 560 0 3 742 213 39 0 0 chr1 20705212 20705238 -176490194 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 3 742 368 243 9 0 chr1 20705246 20705357 -176490075 + GA-rich Low_complexity Low_complexity 2 113 0 3 742 480 299 35 0 chr1 20705745 20705889 -176489543 - B1F SINE Alu 0 149 1 3 742 7680 73 3 7 chr1 20706146 20707824 -176487608 + L1_Mus1 LINE L1 4891 6566 -1 3 742 777 156 0 37 chr1 20708957 20709144 -176486288 + GA-rich Low_complexity Low_complexity 1 180 0 3 743 8360 50 0 3 chr1 20709554 20710553 -176484879 - L1Md_F2 LINE L1 0 6582 5587 3 743 620 125 0 20 chr1 20710555 20710653 -176484779 + B1_Mus1 SINE Alu 4 99 -49 3 743 327 192 352 6 chr1 20710651 20710806 -176484626 - B3 SINE B2 -7 209 1 3 743 539 313 100 44 chr1 20711184 20711455 -176483977 - B4 SINE B4 -6 286 1 3 743 350 0 82 16 chr1 20711664 20711725 -176483707 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 3 743 521 188 17 4 chr1 20711783 20712029 -176483403 + (TG)n Simple_repeat Simple_repeat 1 249 0 3 743 271 205 36 12 chr1 20712030 20712114 -176483318 + (TCTG)n Simple_repeat Simple_repeat 4 89 0 3 743 516 209 0 0 chr1 20712119 20712296 -176483136 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 743 275 225 6 22 chr1 20712342 20712524 -176482908 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 743 321 269 0 0 chr1 20712565 20712714 -176482718 + (TG)n Simple_repeat Simple_repeat 2 150 0 3 743 207 173 0 0 chr1 20712783 20712835 -176482597 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 743 606 198 0 0 chr1 20712869 20713046 -176482386 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 743 859 249 19 84 chr1 20713073 20713384 -176482048 - B4A SINE B4 0 292 2 3 743 889 34 5 69 chr1 20713835 20714023 -176481409 + (TCTCC)n Simple_repeat Simple_repeat 2 177 0 3 743 468 81 0 0 chr1 20714429 20714503 -176480929 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 3 743 197 319 106 57 chr1 20715156 20715279 -176480153 - MIRb SINE MIR -111 157 29 3 743 398 340 110 53 chr1 20716646 20716873 -176478559 + B4A SINE B4 31 270 -22 3 743 534 129 0 0 chr1 20716874 20716959 -176478473 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 743 1587 52 0 32 chr1 20716979 20717199 -176478233 - L1Md_F2 LINE L1 0 6582 6370 3 743 1410 81 5 5 chr1 20719177 20719363 -176476069 + B2_Mm2 SINE B2 1 186 -9 3 743 378 295 242 25 chr1 20724616 20724856 -176470576 + B4A SINE B4 1 292 0 3 743 198 71 0 0 chr1 20724870 20724898 -176470534 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 743 441 145 0 0 chr1 20724903 20724979 -176470453 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 743 248 297 0 30 chr1 20724982 20725048 -176470384 + MER2 DNA MER2_type 2 65 -280 3 743 856 271 108 55 chr1 20725088 20725716 -176469716 + Lx9 LINE L1 6977 7638 -6 3 743 404 194 361 9 chr1 20725740 20725848 -176469584 + Lx3B LINE L1 6827 6973 0 3 743 35 0 0 0 chr1 20725854 20725889 -176469543 + AT_rich Low_complexity Low_complexity 1 35 0 3 743 506 293 38 28 chr1 20726131 20726342 -176469090 + MER2 DNA MER2_type 99 311 -34 3 743 1765 104 59 66 chr1 20727241 20727561 -176467871 + ORR1A3 LTR MaLR 1 318 -8 3 743 237 33 0 0 chr1 20727812 20727842 -176467590 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 743 2916 132 34 19 chr1 20728295 20728768 -176466664 - Lx4A LINE L1 -4 7054 6575 3 743 289 316 25 0 chr1 20728768 20728847 -176466585 - ORR1E LTR MaLR -264 95 15 3 743 351 0 0 0 chr1 20729132 20729171 -176466261 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 743 808 104 96 14 chr1 20729171 20729317 -176466115 - B2_Mm2 SINE B2 -36 159 2 3 743 806 247 0 40 chr1 20730125 20730327 -176465105 + B3A SINE B2 5 198 0 3 743 2241 147 8 5 chr1 20731124 20731500 -176463932 - L1_Mur2 LINE L1 -466 5411 5035 3 743 5274 93 48 17 chr1 20731502 20732279 -176463153 + Lx LINE L1 5850 6650 -4 3 743 831 152 6 12 chr1 20732352 20732518 -176462914 + GA-rich Low_complexity Low_complexity 4 168 0 3 743 432 302 86 7 chr1 20732530 20732670 -176462762 + RSINE1 SINE B4 1 151 -14 3 743 1840 45 0 0 chr1 20733284 20733506 -176461926 - L1_Mus1 LINE L1 -488 6079 5858 3 743 388 352 45 55 chr1 20733716 20734005 -176461427 - L2 LINE L2 -2054 1365 1080 3 743 390 188 87 46 chr1 20734019 20734192 -176461240 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 3 743 369 222 88 47 chr1 20734189 20734359 -176461073 + (CAGGG)n Simple_repeat Simple_repeat 1 177 0 3 743 3159 56 10 2 chr1 20735143 20735536 -176459896 + MTA_Mm LTR MaLR 1 396 0 3 743 561 301 39 22 chr1 20736032 20736212 -176459220 + B4A SINE B4 10 192 -100 3 743 396 258 73 23 chr1 20736838 20737056 -176458376 - L1MA4 LINE L1 -282 6018 5790 3 743 2141 162 122 9 chr1 20737043 20737485 -176457947 - Lx9 LINE L1 -1 7643 7152 3 743 716 279 28 29 chr1 20737481 20737762 -176457670 - L1MA4 LINE L1 -493 5798 5543 3 743 1670 216 48 32 chr1 20737952 20738273 -176457159 - L1_Mur3 LINE L1 -4133 1747 1411 3 743 399 21 0 0 chr1 20738273 20738321 -176457111 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 743 1670 216 48 32 chr1 20738321 20738496 -176456936 - L1_Mur3 LINE L1 -4470 1410 1244 3 743 1346 252 60 18 chr1 20738508 20738991 -176456441 + Lx7 LINE L1 5877 6450 -1246 3 743 2951 154 66 57 chr1 20738995 20739589 -176455843 - RMER19C LTR ERVK -12 599 1 3 743 3854 246 39 22 chr1 20739589 20740541 -176454891 + Lx7 LINE L1 6444 7411 -285 3 743 207 69 0 0 chr1 20740600 20740629 -176454803 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 743 310 220 168 42 chr1 20740731 20740826 -176454606 + PB1D10 SINE Alu 3 109 -8 3 743 234 61 0 58 chr1 20740854 20740906 -176454526 + (CACAC)n Simple_repeat Simple_repeat 2 50 0 3 743 198 156 0 0 chr1 20740915 20740960 -176454472 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 3 743 285 213 57 11 chr1 20741108 20741209 -176454223 + L1M5 LINE L1 5725 5829 -333 3 743 560 318 71 0 chr1 20741209 20741379 -176454053 + B3A SINE B2 1 182 -16 3 743 9087 187 39 27 chr1 20741411 20743662 -176451770 + Lx6 LINE L1 3912 6363 -687 3 743 1496 271 101 32 chr1 20743648 20744224 -176451208 + Lx6 LINE L1 6466 7458 -2 3 743 869 121 150 0 chr1 20745175 20745250 -176450182 + RLTR28 LTR ERVL 1 80 -444 3 743 186 71 0 0 chr1 20745250 20745278 -176450154 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 743 869 121 150 0 chr1 20745278 20745333 -176450099 + RLTR28 LTR ERVL 81 143 -381 3 743 198 0 0 0 chr1 20745333 20745355 -176450077 + (TCC)n Simple_repeat Simple_repeat 3 24 0 3 743 869 121 150 0 chr1 20745355 20745396 -176450036 + RLTR28 LTR ERVL 144 197 -327 3 743 312 169 14 40 chr1 20745392 20745466 -176449966 + RLTR28 LTR ERVL 355 426 -55 3 743 357 269 58 0 chr1 20746379 20746483 -176448949 + PB1D10 SINE Alu 1 110 -7 3 743 2804 171 29 13 chr1 20746843 20747394 -176448038 + RMER15 LTR ERVL 5 564 -11 3 743 3270 133 7 32 chr1 20747394 20747931 -176447501 - RLTR28 LTR ERVL 0 524 1 3 743 490 292 62 0 chr1 20748050 20748194 -176447238 + B3A SINE B2 8 160 -38 3 743 1546 131 204 39 chr1 20748196 20748553 -176446879 + RLTR23 LTR ERV1 15 430 0 3 743 249 180 0 0 chr1 20748567 20748617 -176446815 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 743 465 347 53 0 chr1 20748853 20749003 -176446429 + RSINE1 SINE B4 8 165 0 3 743 717 280 28 0 chr1 20749258 20749440 -176445992 - B3A SINE B2 -10 188 2 3 743 568 227 69 15 chr1 20750569 20750699 -176444733 + B1_Mur4 SINE Alu 1 137 -13 3 743 461 17 0 17 chr1 20750879 20750938 -176444494 + (TTA)n Simple_repeat Simple_repeat 1 58 0 3 743 207 0 0 0 chr1 20751106 20751129 -176444303 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 3 743 597 292 78 26 chr1 20751135 20751406 -176444026 - MLT1D LTR MaLR -205 300 16 3 743 241 196 0 0 chr1 20751976 20752022 -176443410 + ZP3AR Satellite Satellite 40 85 -127 3 743 215 240 0 0 chr1 20751982 20752032 -176443400 + ID4 SINE ID 4 53 -30 3 743 507 178 0 0 chr1 20752038 20752139 -176443293 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 743 486 298 26 52 chr1 20752257 20752448 -176442984 + B3A SINE B2 1 186 -12 3 743 897 161 0 49 chr1 20752469 20752652 -176442780 - B2_Mm2 SINE B2 -20 175 2 3 743 661 181 0 48 chr1 20752679 20752865 -176442567 + GA-rich Low_complexity Low_complexity 4 180 0 3 743 1683 276 46 92 chr1 20753097 20754073 -176441359 - Lx7 LINE L1 -1131 6342 5324 3 743 2465 74 12 12 chr1 20754073 20754414 -176441018 + L1Md_F2 LINE L1 6242 6582 0 3 743 1683 248 31 121 chr1 20754414 20754670 -176440762 - Lx7 LINE L1 -524 5323 5112 3 743 1976 294 132 13 chr1 20754721 20754965 -176440467 + Lx8 LINE L1 6442 6708 -765 3 743 270 0 0 0 chr1 20754965 20754995 -176440437 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 743 1976 294 132 13 chr1 20754995 20755570 -176439862 + Lx8 LINE L1 6709 7357 -116 3 743 315 0 0 0 chr1 20755633 20755668 -176439764 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 743 189 171 0 0 chr1 20755678 20755713 -176439719 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 743 207 0 0 0 chr1 20756078 20756101 -176439331 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 743 209 338 0 13 chr1 20756350 20756425 -176439007 + MIR SINE MIR 121 194 -68 3 743 1187 198 28 174 chr1 20757098 20757563 -176437869 + RMER10B LTR ERVL 2 398 0 3 743 239 312 69 28 chr1 20757916 20758061 -176437371 - MIR SINE MIR -24 238 88 3 743 5702 57 0 3 chr1 20758090 20758790 -176436642 - L1_Mus1 LINE L1 -11 6556 5859 3 743 9227 198 38 17 chr1 20758795 20763054 -176432378 + ETnERV-int LTR ERVK 343 5349 -2057 3 743 446 107 0 0 chr1 20763053 20763109 -176432323 + ETnERV2-int LTR ERVK 4564 4619 -2787 3 743 467 78 50 38 chr1 20763109 20763189 -176432243 - B2_Mm1t SINE B2 -110 83 3 3 743 7049 107 10 1 chr1 20763192 20764120 -176431312 + ETnERV2-int LTR ERVK 6254 7189 -217 3 743 636 204 185 49 chr1 20764156 20764399 -176431033 + RLTR13D6 LTR ERVK 162 437 -465 3 743 640 158 63 21 chr1 20764402 20764544 -176430888 + MMETn-int LTR ERVK 4697 4844 0 4 743 906 207 166 54 chr1 20764544 20764912 -176430520 + RLTR9E LTR ERVK 1 409 0 4 743 24 32 0 0 chr1 20765040 20765071 -176430361 + AT_rich Low_complexity Low_complexity 1 31 0 4 743 386 239 21 54 chr1 20765096 20765189 -176430243 + B1F2 SINE Alu 3 92 -57 4 743 1459 237 77 8 chr1 20766836 20767215 -176428217 - MTD LTR MaLR -14 405 1 4 743 34 55 0 0 chr1 20767221 20767276 -176428156 + AT_rich Low_complexity Low_complexity 1 55 0 4 743 668 200 63 14 chr1 20768945 20769087 -176426345 + B1F SINE Alu 1 149 0 4 743 778 209 0 0 chr1 20769175 20769314 -176426118 - B1_Mus1 SINE Alu 0 148 10 4 743 232 260 24 94 chr1 20769239 20769324 -176426108 - MT2B2 LTR ERVL -344 240 162 4 743 1175 138 17 0 chr1 20769890 20770071 -176425361 + B2_Mm2 SINE B2 2 185 -10 4 743 1915 193 30 3 chr1 20771305 20771669 -176423763 + ORR1D1 LTR MaLR 1 374 0 4 743 207 0 0 0 chr1 20772057 20772080 -176423352 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 743 304 290 60 22 chr1 20772826 20772960 -176422472 + B1F2 SINE Alu 1 139 -10 4 743 914 64 135 0 chr1 20772960 20773101 -176422331 + B2_Mm2 SINE B2 2 161 -34 4 743 291 54 0 0 chr1 20773101 20773138 -176422294 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 743 29 28 0 0 chr1 20773795 20773831 -176421601 + AT_rich Low_complexity Low_complexity 1 36 0 4 743 655 168 34 0 chr1 20775317 20775436 -176419996 - B1_Mur4 SINE Alu -6 144 22 4 743 714 112 0 0 chr1 20775438 20775545 -176419887 - RLTR41 LTR ERV1 -149 297 191 4 743 437 158 24 0 chr1 20775549 20775631 -176419801 - RLTR41 LTR ERV1 -362 84 1 4 743 361 331 161 40 chr1 20775703 20776052 -176419380 + MLT1J-int LTR MaLR 117 507 -880 4 743 1895 132 69 89 chr1 20776700 20777106 -176418326 - RMER10B LTR ERVL 0 398 1 4 743 204 40 0 0 chr1 20777184 20777209 -176418223 + (T)n Simple_repeat Simple_repeat 1 25 0 4 743 1157 54 0 33 chr1 20777777 20777930 -176417502 + B1_Mus1 SINE Alu 1 148 0 4 743 423 0 0 0 chr1 20778301 20778348 -176417084 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 743 430 207 186 101 chr1 20778351 20778480 -176416952 - B1_Mus2 SINE Alu -6 141 2 4 743 624 306 21 0 chr1 20778638 20778824 -176416608 + ID_B1 SINE B4 2 191 -33 4 743 302 344 73 8 chr1 20778718 20778841 -176416591 + B1F SINE Alu 5 135 -14 4 743 235 333 33 0 chr1 20778841 20778961 -176416471 + GA-rich Low_complexity Low_complexity 2 125 0 4 743 255 262 24 24 chr1 20778860 20778942 -176416490 + A-rich Low_complexity Low_complexity 1 82 0 4 743 304 137 20 0 chr1 20778973 20779024 -176416408 - RMER10B LTR ERVL -20 378 327 4 743 1345 144 26 26 chr1 20779035 20779299 -176416133 - RMER10B LTR ERVL -133 265 2 4 743 909 224 55 20 chr1 20779557 20779757 -176415675 + B3 SINE B2 5 211 -5 4 743 201 156 0 0 chr1 20780452 20780484 -176414948 + CT-rich Low_complexity Low_complexity 4 35 0 4 743 3438 31 2 2 chr1 20780487 20780880 -176414552 - MTA_Mm LTR MaLR 0 396 4 4 743 824 143 24 0 chr1 20780880 20781048 -176414384 + CT-rich Low_complexity Low_complexity 1 172 0 4 743 726 194 72 0 chr1 20781048 20781187 -176414245 - B1_Mur1 SINE Alu 0 149 1 4 743 262 306 36 53 chr1 20781291 20781405 -176414027 + PB1D10 SINE Alu 2 117 0 4 743 614 212 43 21 chr1 20782068 20782208 -176413224 - B1_Mur1 SINE Alu -6 143 1 4 743 299 302 19 69 chr1 20782208 20782228 -176413204 - ID_B1 SINE B4 -6 218 67 4 743 583 184 159 8 chr1 20782343 20782469 -176412963 + RSINE1 SINE B4 3 147 -18 4 743 358 236 140 35 chr1 20783401 20783515 -176411917 - ID_B1 SINE B4 0 224 99 4 743 414 119 36 0 chr1 20783591 20783675 -176411757 + (GTATG)n Simple_repeat Simple_repeat 2 88 0 4 743 401 223 8 111 chr1 20784363 20784489 -176410943 + MT2B LTR ERVL 152 264 -337 4 743 1024 47 0 8 chr1 20784397 20784525 -176410907 + B1_Mm SINE Alu 21 147 0 4 743 25 31 0 0 chr1 20784525 20784557 -176410875 + AT_rich Low_complexity Low_complexity 1 32 0 4 743 25 31 0 0 chr1 20784610 20784642 -176410790 + AT_rich Low_complexity Low_complexity 1 32 0 4 743 526 293 21 7 chr1 20785106 20785247 -176410185 - RSINE1 SINE B4 -21 144 2 4 743 453 202 32 0 chr1 20786403 20786491 -176408941 + MER2 DNA MER2_type 97 187 -158 4 743 2226 188 28 55 chr1 20786491 20786920 -176408512 + RLTR16 LTR ERVK 1 414 -91 4 743 387 0 0 0 chr1 20786920 20786963 -176408469 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 743 2226 188 28 55 chr1 20786963 20787040 -176408392 + RLTR16 LTR ERVK 415 493 -12 4 743 406 306 8 24 chr1 20787118 20787242 -176408190 + MER2 DNA MER2_type 194 315 -30 4 743 1388 202 84 18 chr1 20787270 20787697 -176407735 + RMER15 LTR ERVL 3 575 0 4 743 365 308 106 62 chr1 20788174 20788253 -176407179 + B4A SINE B4 4 83 -209 4 743 959 147 218 0 chr1 20788253 20788423 -176407009 + B3 SINE B2 4 210 -6 4 743 365 308 106 62 chr1 20788423 20788551 -176406881 + B4A SINE B4 84 220 -72 4 743 1013 107 40 35 chr1 20789371 20789594 -176405838 + RMER6A LTR ERVK 8 155 -535 4 743 370 95 95 0 chr1 20789571 20789634 -176405798 + RMER6A LTR ERVK 86 154 -602 4 743 233 54 162 0 chr1 20789635 20789672 -176405760 + RMER6A LTR ERVK 117 159 -561 4 743 2651 144 102 19 chr1 20789649 20790186 -176405246 + RMER6A LTR ERVK 86 667 -89 4 743 525 245 124 93 chr1 20790183 20790608 -176404824 + RMER2 LTR ERV1 5 567 0 4 743 461 202 88 44 chr1 20790608 20790707 -176404725 + RMER6A LTR ERVK 653 756 0 4 743 425 232 112 25 chr1 20790881 20791056 -176404376 - B3A SINE B2 -3 190 1 4 743 461 262 48 45 chr1 20791098 20791263 -176404169 - Lx5 LINE L1 -701 6349 6234 4 743 817 240 210 22 chr1 20791275 20791655 -176403777 + Lx6 LINE L1 6988 7379 -81 4 743 297 209 62 21 chr1 20792125 20792232 -176403200 - B1_Mus2 SINE Alu -21 126 12 4 743 223 325 24 0 chr1 20792260 20792343 -176403089 - ID_B1 SINE B4 -86 138 54 4 743 189 171 0 0 chr1 20792456 20792491 -176402941 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 743 526 258 23 70 chr1 20792871 20793042 -176402390 + RSINE1 SINE B4 3 165 0 4 743 253 281 105 38 chr1 20794231 20794364 -176401068 + B1_Mur2 SINE Alu 5 146 -3 4 743 2057 228 24 7 chr1 20796400 20796820 -176398612 - Lx6 LINE L1 -87 7373 6947 4 743 395 284 133 37 chr1 20797161 20797402 -176398030 + Lx8 LINE L1 6859 7122 -351 4 743 207 267 133 0 chr1 20797642 20797702 -176397730 - MIRm SINE MIR -117 159 92 4 743 355 206 241 0 chr1 20799413 20799503 -176395929 - PB1D7 SINE Alu -8 112 4 4 743 574 200 34 75 chr1 20800591 20800737 -176394695 - B1_Mur2 SINE Alu -8 141 2 4 743 390 213 95 11 chr1 20801001 20801096 -176394336 + L1M2 LINE L1 5677 5779 -521 4 743 461 289 14 36 chr1 20801110 20801250 -176394182 + ID_B1 SINE B4 79 215 -9 4 743 764 181 8 0 chr1 20801129 20801256 -176394176 + B1_Mur2 SINE Alu 19 146 -3 4 743 243 161 0 0 chr1 20801256 20801312 -176394120 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 743 836 299 79 35 chr1 20801355 20801670 -176393762 + RCHARR1 DNA MER1_type 57 385 -589 4 743 480 265 14 43 chr1 20801699 20801837 -176393595 + B4A SINE B4 159 292 0 4 743 358 209 4 14 chr1 20803367 20803458 -176391974 + B1F SINE Alu 53 144 -3 4 743 251 284 0 82 chr1 20803745 20803818 -176391614 + ID4_ SINE ID 3 69 -14 4 743 207 146 0 0 chr1 20803844 20803885 -176391547 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 743 325 308 103 0 chr1 20803974 20804081 -176391351 + RSINE1 SINE B4 44 161 -4 4 743 303 190 76 0 chr1 20804121 20804200 -176391232 + PB1D10 SINE Alu 33 117 0 4 743 616 125 217 0 chr1 20805296 20805416 -176390016 - B1_Mus2 SINE Alu -1 146 1 4 743 227 238 170 13 chr1 20805428 20805581 -176389851 + L1M5 LINE L1 5630 5806 -367 4 743 1388 164 9 5 chr1 20805664 20805885 -176389547 + URR1B DNA MER1_type 3 224 -1 4 743 713 203 28 21 chr1 20805922 20806063 -176389369 + B1_Mur2 SINE Alu 2 143 -6 4 743 186 43 0 0 chr1 20806181 20806204 -176389228 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 743 555 323 5 65 chr1 20806310 20806509 -176388923 - B4A SINE B4 -105 187 1 4 743 332 250 78 22 chr1 20808326 20808416 -176387016 + PB1D7 SINE Alu 23 117 -3 4 743 180 111 0 0 chr1 20810614 20810641 -176384791 + (T)n Simple_repeat Simple_repeat 1 27 0 4 743 388 177 12 81 chr1 20810726 20810812 -176384620 - B4A SINE B4 -20 272 193 4 743 433 247 51 10 chr1 20812661 20812759 -176382673 + PB1D9 SINE Alu 5 106 -14 4 743 869 129 38 8 chr1 20813040 20813173 -176382259 + B1_Mur4 SINE Alu 1 137 -13 4 743 186 71 0 0 chr1 20813262 20813290 -176382142 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 4 743 621 276 45 5 chr1 20814470 20814670 -176380762 + MER3 DNA MER1_type 2 209 0 4 743 238 222 239 22 chr1 20814789 20814881 -176380551 - PB1D9 SINE Alu -4 116 5 4 743 674 258 82 6 chr1 20814934 20815117 -176380315 + B3A SINE B2 2 198 0 4 743 421 230 70 49 chr1 20815588 20815730 -176379702 - RLTR43A LTR ERVK 0 364 220 4 743 767 154 115 0 chr1 20815930 20816060 -176379372 + B1_Mus1 SINE Alu 3 147 -1 4 743 535 315 126 4 chr1 20816567 20816822 -176378610 + B4A SINE B4 3 288 -4 4 743 252 86 0 0 chr1 20816857 20816892 -176378540 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 743 1369 185 148 41 chr1 20817183 20817370 -176378062 + ORR1C2 LTR MaLR 1 216 -168 4 743 381 43 0 0 chr1 20817370 20817417 -176378015 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 743 1369 185 148 41 chr1 20817417 20817573 -176377859 + ORR1C2 LTR MaLR 217 381 -3 4 743 536 228 38 137 chr1 20817940 20818123 -176377309 - MLT1A1 LTR MaLR 0 408 244 4 743 307 326 27 27 chr1 20818257 20818405 -176377027 + ORR1E LTR MaLR 25 172 -187 4 743 474 331 15 7 chr1 20818947 20819084 -176376348 + MLT1A0 LTR MaLR 1 138 -227 4 743 242 250 0 16 chr1 20819084 20819145 -176376287 - MLT1A1 LTR MaLR 0 408 349 5 743 452 293 62 68 chr1 20819316 20819492 -176375940 - MLT1A1 LTR MaLR -233 175 1 5 743 597 283 48 0 chr1 20819492 20819636 -176375796 + MLT1A0 LTR MaLR 134 284 -81 4 743 375 232 35 18 chr1 20819819 20819933 -176375499 + PB1D7 SINE Alu 5 120 0 5 743 305 321 72 83 chr1 20820017 20820197 -176375235 + MTEa LTR MaLR 1 178 -201 5 743 728 152 0 8 chr1 20820200 20820333 -176375099 + GA-rich Low_complexity Low_complexity 2 133 0 5 743 255 91 0 0 chr1 20820333 20820366 -176375066 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 5 743 831 192 0 0 chr1 20820367 20820539 -176374893 + GA-rich Low_complexity Low_complexity 2 173 0 5 743 1414 33 0 11 chr1 20820543 20820725 -176374707 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 743 313 225 25 12 chr1 20821036 20821117 -176374315 - ID4_ SINE ID 0 83 2 5 743 536 271 0 30 chr1 20821124 20821257 -176374175 - B1F2 SINE Alu 0 149 21 5 743 234 0 0 0 chr1 20821412 20821438 -176373994 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 743 518 302 23 8 chr1 20821457 20821587 -176373845 + RSINE1 SINE B4 10 141 -24 5 743 387 0 0 0 chr1 20821590 20821633 -176373799 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 743 2504 169 19 2 chr1 20821915 20822329 -176373103 - MTC LTR MaLR 0 421 1 5 743 325 241 48 48 chr1 20822646 20822729 -176372703 - B3A SINE B2 -26 172 90 5 743 315 75 0 0 chr1 20822744 20822784 -176372648 - ORR1A2 LTR MaLR -8 318 279 5 743 3051 179 57 92 chr1 20822795 20823618 -176371814 - RMER17D2 LTR ERVK -15 794 1 5 743 7513 61 29 1 chr1 20823643 20824594 -176370838 + L1_Mus1 LINE L1 5590 6567 0 5 743 1706 105 14 73 chr1 20824614 20824901 -176370531 - ORR1A2 LTR MaLR -57 270 1 5 743 303 244 141 22 chr1 20824901 20824988 -176370444 - B3A SINE B2 -99 99 2 5 743 266 294 19 10 chr1 20825159 20825262 -176370170 - BC1_Mm scRNA scRNA -42 110 7 5 743 231 239 141 0 chr1 20826196 20826267 -176369165 - ID_B1 SINE B4 -2 222 142 5 743 1618 139 156 33 chr1 20826422 20826787 -176368645 + RMER17C LTR ERVK 1 410 0 5 743 1320 173 44 52 chr1 20827035 20827401 -176368031 + RMER17C LTR ERVK 48 410 0 5 743 1402 206 55 26 chr1 20827933 20828263 -176367169 + Lx6 LINE L1 6894 7502 -194 5 743 332 153 128 12 chr1 20828273 20828359 -176367073 + Lx6 LINE L1 7357 7452 -8 5 743 243 0 0 0 chr1 20828359 20828386 -176367046 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 743 243 139 0 0 chr1 20828467 20828482 -176366950 + (T)n Simple_repeat Simple_repeat 1 15 0 5 743 1280 93 49 0 chr1 20828482 20828665 -176366767 - B2_Mm1a SINE B2 -1 192 1 5 743 243 139 0 0 chr1 20828665 20828692 -176366740 + (T)n Simple_repeat Simple_repeat 1 27 0 5 743 1053 49 91 0 chr1 20828692 20828835 -176366597 - ORR1A2 LTR MaLR -51 276 121 5 743 210 407 55 0 chr1 20828894 20829039 -176366393 - L3 LINE CR1 -1358 3131 2979 5 743 206 339 67 59 chr1 20829162 20829281 -176366151 + MIR SINE MIR 20 139 -69 5 743 457 322 93 64 chr1 20829311 20829623 -176365809 + MLT1B LTR MaLR 30 350 -40 5 743 277 244 121 12 chr1 20830289 20830372 -176365060 + ORSL-2b DNA Tip100 1 92 -416 5 743 1373 272 25 27 chr1 20830403 20830811 -176364621 + BGLII_B LTR ERVK 8 414 -27 5 743 414 234 0 13 chr1 20830854 20830932 -176364500 + B4 SINE B4 1 77 -215 5 743 968 271 58 44 chr1 20830922 20831216 -176364216 - MTD LTR MaLR -121 298 1 5 743 315 233 0 0 chr1 20831218 20831278 -176364154 - ORR1E LTR MaLR -291 68 9 5 743 2258 128 98 0 chr1 20831280 20831639 -176363793 - ORR1B1 LTR MaLR 0 394 1 5 743 6692 89 16 1 chr1 20831775 20832692 -176362740 - L1_Mus3 LINE L1 -164 6474 5569 5 743 356 301 70 17 chr1 20832800 20832915 -176362517 - RSINE1 SINE B4 -29 136 16 5 743 1279 155 56 0 chr1 20833326 20833539 -176361893 + URR1A DNA MER1_type 1 225 -1 5 743 337 288 26 18 chr1 20834609 20834722 -176360710 + ID_B1 SINE B4 3 116 -108 5 743 249 234 0 0 chr1 20834828 20834875 -176360557 + BC1_Mm scRNA scRNA 14 60 -92 5 743 186 43 0 0 chr1 20834888 20834911 -176360521 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 5 743 808 226 77 5 chr1 20836298 20836494 -176358938 - B3 SINE B2 -3 213 4 5 743 1029 198 168 19 chr1 20837054 20837375 -176358057 - MTD LTR MaLR 0 419 19 5 743 856 172 0 11 chr1 20837377 20837553 -176357879 + GA-rich Low_complexity Low_complexity 3 176 0 5 743 252 184 0 0 chr1 20837581 20837630 -176357802 + GA-rich Low_complexity Low_complexity 4 52 0 5 743 351 113 0 0 chr1 20837822 20837875 -176357557 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 743 432 37 0 0 chr1 20837875 20837929 -176357503 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 743 244 109 78 141 chr1 20837939 20838003 -176357429 + MTC LTR MaLR 339 398 -23 5 743 687 108 0 0 chr1 20838092 20838194 -176357238 + (CATA)n Simple_repeat Simple_repeat 2 103 0 5 743 615 271 0 8 chr1 20838899 20839033 -176356399 - ID_B1 SINE B4 -11 213 81 5 743 298 155 0 33 chr1 20839049 20839109 -176356323 + B1_Mur4 SINE Alu 3 60 -90 5 743 204 0 0 156 chr1 20839110 20839206 -176356226 + (CAGAG)n Simple_repeat Simple_repeat 5 85 0 5 743 282 141 66 66 chr1 20839207 20839313 -176356119 + RLTR25B LTR ERVK 397 502 -526 5 743 755 57 9 0 chr1 20839251 20839356 -176356076 + B1_Mus2 SINE Alu 42 147 0 5 743 228 229 103 10 chr1 20839368 20839465 -176355967 - L1MB8 LINE L1 -7 6171 6066 5 743 315 200 32 43 chr1 20839673 20839767 -176355665 - L1M2 LINE L1 -853 5447 5355 5 743 219 36 0 0 chr1 20839772 20839800 -176355632 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 5 743 2316 86 45 0 chr1 20839807 20840120 -176355312 - ORR1A2 LTR MaLR 0 327 1 5 743 390 236 85 11 chr1 20840124 20840218 -176355214 - RSINE1 SINE B4 -60 105 5 5 92 260 323 98 55 chr1 20840381 20840545 -176354887 - L1MC LINE L1 -2126 5756 5586 5 744 231 36 0 0 chr1 20841605 20841633 -176353799 + (CAA)n Simple_repeat Simple_repeat 3 30 0 5 744 785 274 28 14 chr1 20841721 20841939 -176353493 - ID_B1 SINE B4 -2 222 2 5 744 234 125 0 0 chr1 20842243 20842291 -176353141 + (T)n Simple_repeat Simple_repeat 1 48 0 5 744 25 31 0 0 chr1 20842332 20842364 -176353068 + AT_rich Low_complexity Low_complexity 1 32 0 5 744 487 213 171 8 chr1 20842536 20842659 -176352773 - B1F SINE Alu -1 148 6 5 744 610 308 30 10 chr1 20842689 20842886 -176352546 - B3 SINE B2 0 216 16 5 744 3859 95 46 7 chr1 20843060 20843603 -176351829 + LTRIS2 LTR ERV1 1 564 0 5 744 1859 169 63 14 chr1 20843815 20844181 -176351251 + ORR1C2 LTR MaLR 1 384 0 5 744 1388 206 119 15 chr1 20844500 20844835 -176350597 - ORR1D2 LTR MaLR 0 370 1 5 744 228 300 0 0 chr1 20844877 20844937 -176350495 - ID4 SINE ID -19 64 5 5 744 258 184 0 0 chr1 20844989 20845038 -176350394 + B1F2 SINE Alu 8 56 -93 5 744 887 43 0 8 chr1 20845040 20845158 -176350274 + MusHAL1 LINE L1 1164 1280 -1432 5 744 4770 106 27 19 chr1 20845157 20845665 -176349767 + Lx2 LINE L1 5909 6431 -566 5 744 2892 96 15 0 chr1 20845665 20846059 -176349373 - MTB LTR MaLR 0 400 1 5 744 4770 106 27 19 chr1 20846059 20846281 -176349151 + Lx2 LINE L1 6432 6645 -352 5 744 1070 105 160 16 chr1 20846279 20846473 -176348959 + Lx2 LINE L1 6775 6996 -1 5 744 263 250 48 36 chr1 20846730 20846813 -176348619 - RSINE1 SINE B4 -38 127 44 5 744 1429 222 63 88 chr1 20846819 20847249 -176348183 + MTD LTR MaLR 1 419 0 5 744 540 272 104 11 chr1 20847477 20847659 -176347773 + MTD LTR MaLR 221 419 0 5 744 2825 285 136 12 chr1 20847659 20848579 -176346853 - Lx8 LINE L1 -247 7226 6193 5 744 1147 151 15 5 chr1 20848582 20848782 -176346650 - ORR1A0 LTR MaLR -8 338 137 5 744 1489 259 46 5 chr1 20848814 20849134 -176346298 + Lx8 LINE L1 6524 6855 -618 5 744 243 0 0 0 chr1 20849134 20849161 -176346271 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 744 1489 259 46 5 chr1 20849161 20849228 -176346204 + Lx8 LINE L1 6856 6926 -547 5 744 312 295 109 108 chr1 20849228 20849720 -176345712 - RLTR11A2 LTR ERVK -15 513 14 5 744 409 309 104 13 chr1 20849770 20849924 -176345508 + Lx8 LINE L1 6984 7151 -322 5 744 926 129 7 0 chr1 20850536 20850683 -176344749 + B1_Mur4 SINE Alu 3 150 0 5 744 255 355 18 18 chr1 20851208 20851317 -176344115 - ERVL-B4-int LTR ERVL -677 5037 4929 5 744 1118 235 67 96 chr1 20851493 20851879 -176343553 + MTE2b LTR MaLR 5 379 0 5 744 222 263 73 73 chr1 20852016 20852030 -176343402 - ID4_ SINE ID 0 83 7 5 744 230 262 79 32 chr1 20852030 20852093 -176343339 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 5 744 488 318 92 41 chr1 20852116 20852431 -176343001 - HERV16-int LTR ERVL -3838 1158 828 5 744 1506 200 46 75 chr1 20853128 20853582 -176341850 + BGLII_B LTR ERVK 1 441 0 5 744 816 184 71 0 chr1 20854278 20854446 -176340986 - B3 SINE B2 -1 215 36 5 744 194 208 0 19 chr1 20854471 20854525 -176340907 + CT-rich Low_complexity Low_complexity 5 57 0 5 744 222 118 0 0 chr1 20855346 20855380 -176340052 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 744 21 0 0 0 chr1 20855450 20855471 -176339961 + AT_rich Low_complexity Low_complexity 1 21 0 5 744 263 234 106 0 chr1 20855481 20855575 -176339857 - Lx6 LINE L1 -55 7405 7302 5 744 284 242 115 46 chr1 20855683 20855813 -176339619 + RMER4A LTR ERVK 25 163 -303 5 744 492 62 0 0 chr1 20856010 20856074 -176339358 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 744 815 278 82 4 chr1 20856104 20856371 -176339061 - B4A SINE B4 0 292 5 5 744 325 182 11 33 chr1 20857046 20857137 -176338295 + RLTR15 LTR ERVK 33 121 -238 5 744 446 232 32 32 chr1 20857289 20857445 -176337987 + RLTR15 LTR ERVK 186 341 -18 5 744 440 342 34 34 chr1 20857655 20857921 -176337511 - LTR16B LTR ERVL -123 340 75 5 744 3996 120 86 61 chr1 20858348 20859220 -176336212 - RMER17A2 LTR ERVK -12 894 1 6 744 1384 162 62 1 chr1 20859469 20859784 -176335648 + Lx4B LINE L1 6688 7050 0 6 744 360 0 0 0 chr1 20859800 20859840 -176335592 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 744 213 39 0 0 chr1 20860915 20860941 -176334491 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 6 744 357 183 58 57 chr1 20860958 20861067 -176334365 - B1_Mur4 SINE Alu 0 120 18 6 744 781 117 15 0 chr1 20861538 20861675 -176333757 + (TG)n Simple_repeat Simple_repeat 1 139 0 6 744 675 289 50 12 chr1 20861717 20861976 -176333456 - B4A SINE B4 -18 274 6 6 744 180 237 0 0 chr1 20862442 20862480 -176332952 - L2b LINE L2 -78 3297 3260 6 744 415 269 62 31 chr1 20862766 20862927 -176332505 + MIRb SINE MIR 77 242 -26 6 744 339 25 0 0 chr1 20863057 20863097 -176332335 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 744 239 431 46 0 chr1 20863554 20863684 -176331748 - L2b LINE L2 0 3375 3240 6 744 456 19 0 0 chr1 20863800 20863853 -176331579 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 744 1035 115 0 26 chr1 20864659 20864811 -176330621 - B1_Mus1 SINE Alu 0 148 1 6 744 1195 137 61 5 chr1 20864870 20865082 -176330350 + URR1A DNA MER1_type 3 226 0 6 744 522 316 91 17 chr1 20865130 20865371 -176330061 + MLT1E1A LTR MaLR 346 604 -76 6 744 348 314 35 59 chr1 20865503 20865672 -176329760 + MER2B DNA MER2_type 2 166 -170 6 744 1535 150 43 58 chr1 20865868 20866194 -176329238 + ORR1A4 LTR MaLR 1 321 -8 6 744 341 157 14 28 chr1 20866197 20866269 -176329163 - MTC LTR MaLR -31 390 320 6 744 556 201 250 13 chr1 20866263 20866419 -176329013 - RLTR20B3 LTR ERVK -361 216 24 6 744 248 244 101 13 chr1 20866422 20866501 -176328931 + MER2B DNA MER2_type 206 291 -45 6 744 2122 87 65 0 chr1 20868235 20868544 -176326888 - ORR1A4 LTR MaLR 0 329 1 6 744 863 302 21 39 chr1 20868651 20868918 -176326514 + B4 SINE B4 6 269 -23 6 744 318 87 0 0 chr1 20868918 20868964 -176326468 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 744 863 302 21 39 chr1 20868964 20868982 -176326450 + B4 SINE B4 270 286 -6 6 744 3539 176 113 113 chr1 20869008 20869995 -176325437 - RMER1B Other Other -4 1062 76 6 744 464 252 0 28 chr1 20870111 20870217 -176325215 + B1_Mus1 SINE Alu 28 130 -18 6 744 973 257 113 41 chr1 20871327 20871740 -176323692 - MTD LTR MaLR 0 421 1 6 744 225 0 0 0 chr1 20872165 20872190 -176323242 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 744 244 188 0 0 chr1 20872205 20872253 -176323179 - B1_Mus1 SINE Alu -95 53 6 6 744 183 42 0 0 chr1 20872394 20872418 -176323014 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 744 1444 261 42 16 chr1 20872426 20872811 -176322621 + MTD LTR MaLR 25 419 0 6 744 191 350 105 21 chr1 20872995 20873138 -176322294 - L2b LINE L2 -2 3373 3219 6 744 3274 51 5 0 chr1 20874316 20874710 -176320722 + MTA_Mm LTR MaLR 1 396 0 6 744 230 282 0 0 chr1 20874931 20875002 -176320430 - ID4_ SINE ID 0 83 13 6 744 346 229 193 8 chr1 20875013 20875132 -176320300 - B1F1 SINE Alu -8 141 1 6 744 469 304 94 6 chr1 20875170 20875329 -176320103 + B3A SINE B2 1 173 -25 6 744 396 125 0 0 chr1 20875329 20875393 -176320039 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 744 395 336 42 30 chr1 20875833 20876069 -176319363 - MIR SINE MIR -15 247 9 6 744 1304 307 124 44 chr1 20876994 20877727 -176317705 - Lx8 LINE L1 -17 7456 6665 6 744 368 253 12 12 chr1 20877739 20877819 -176317613 - RMER15-int LTR ERVL -524 4475 4396 6 744 2707 68 87 0 chr1 20878073 20878441 -176316991 - MTB LTR MaLR 0 400 1 6 744 792 218 206 0 chr1 20878695 20878943 -176316489 - RCHARR1 DNA MER1_type -114 860 562 6 744 458 325 42 16 chr1 20878963 20879154 -176316278 - RCHARR1 DNA MER1_type -772 202 7 6 744 506 284 99 99 chr1 20882492 20882715 -176312717 - ID_B1 SINE B4 -1 223 1 6 744 575 221 53 15 chr1 20882748 20882881 -176312551 - B1_Mur1 SINE Alu 0 149 12 6 744 215 179 36 0 chr1 20882895 20882951 -176312481 + (TTG)n Simple_repeat Simple_repeat 2 59 0 6 744 350 338 0 14 chr1 20883232 20883370 -176312062 - MARNA DNA Mariner -66 520 385 6 744 826 191 138 0 chr1 20883648 20883837 -176311595 - URR1A DNA MER1_type -11 215 1 6 744 542 273 41 14 chr1 20884096 20884241 -176311191 + B1_Mur1 SINE Alu 1 149 0 6 744 257 82 31 47 chr1 20884242 20884306 -176311126 + A-rich Low_complexity Low_complexity 3 65 0 6 744 279 267 0 0 chr1 20885343 20885403 -176310029 + CT-rich Low_complexity Low_complexity 2 61 0 6 744 261 310 45 23 chr1 20885481 20885613 -176309819 - ID_B1 SINE B4 -88 136 2 6 744 593 272 121 67 chr1 20886046 20886377 -176309055 - MTEb LTR MaLR -4 375 36 6 744 249 323 20 30 chr1 20886544 20886643 -176308789 + PB1D10 SINE Alu 4 101 -16 6 744 198 239 103 15 chr1 20886815 20886883 -176308549 + MER5B DNA MER1_type 92 165 -13 6 744 383 0 21 0 chr1 20886918 20886965 -176308467 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 744 459 268 0 26 chr1 20886980 20887095 -176308337 + PB1D7 SINE Alu 9 120 0 6 744 574 281 129 65 chr1 20887205 20887468 -176307964 + B4A SINE B4 1 280 -12 6 744 378 0 0 0 chr1 20887513 20887555 -176307877 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 744 408 292 13 94 chr1 20887817 20887976 -176307456 - RSINE1 SINE B4 -18 147 2 6 744 421 270 35 42 chr1 20888175 20888318 -176307114 - MIRb SINE MIR -31 237 96 6 744 21 0 0 0 chr1 20888438 20888459 -176306973 + AT_rich Low_complexity Low_complexity 1 21 0 6 744 471 108 0 0 chr1 20888531 20888605 -176306827 - B1_Mus2 SINE Alu -2 145 72 6 744 334 307 107 70 chr1 20888629 20888920 -176306512 - B4 SINE B4 0 292 1 6 744 209 333 86 0 chr1 20888980 20889097 -176306335 - L2a LINE L2 0 3426 3300 6 744 208 254 0 45 chr1 20889154 20889220 -176306212 + C-rich Low_complexity Low_complexity 1 63 0 6 744 885 263 6 77 chr1 20889561 20889874 -176305558 + B4A SINE B4 2 292 0 6 744 251 250 0 22 chr1 20889893 20889983 -176305449 + (CATA)n Simple_repeat Simple_repeat 4 91 0 6 744 821 269 85 49 chr1 20890018 20890323 -176305109 - MTEb LTR MaLR -53 326 11 6 744 322 197 0 15 chr1 20891410 20891477 -176303955 - PB1D10 SINE Alu -49 68 3 6 744 213 81 54 0 chr1 20891728 20891765 -176303667 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 744 378 0 0 0 chr1 20891769 20891811 -176303621 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 744 488 219 111 46 chr1 20892323 20892476 -176302956 + RSINE1 SINE B4 2 164 -1 6 744 360 266 92 0 chr1 20892559 20892668 -176302764 + ID_B1 SINE B4 104 222 -2 6 744 543 229 0 0 chr1 20892944 20893240 -176302192 + (CA)n Simple_repeat Simple_repeat 1 296 0 6 744 593 179 0 8 chr1 20894722 20894846 -176300586 + CT-rich Low_complexity Low_complexity 2 124 0 6 744 595 152 127 5 chr1 20894846 20894978 -176300454 - B1_Mur2 SINE Alu 0 147 16 6 744 180 125 0 0 chr1 20895002 20895034 -176300398 + (T)n Simple_repeat Simple_repeat 1 32 0 6 744 233 195 157 12 chr1 20895044 20895127 -176300305 - L1MC5 LINE L1 -175 7786 7692 6 744 197 310 200 0 chr1 20895130 20895275 -176300157 - MIR SINE MIR -74 188 15 6 744 295 260 64 128 chr1 20896593 20896734 -176298698 - B4A SINE B4 0 292 161 6 744 490 292 14 7 chr1 20896796 20896941 -176298491 - B4A SINE B4 -143 149 4 6 744 294 265 110 62 chr1 20897129 20897274 -176298158 - MER117 DNA MER1_type -40 157 6 6 744 378 188 232 30 chr1 20897406 20897505 -176297927 - PB1D9 SINE Alu -1 119 1 6 744 259 125 0 82 chr1 20897551 20897612 -176297820 - B1_Mur4 SINE Alu 0 150 95 6 744 429 20 0 0 chr1 20897633 20897683 -176297749 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 744 586 195 148 0 chr1 20897816 20897944 -176297488 + B1_Mus1 SINE Alu 1 147 -1 6 744 213 39 0 0 chr1 20898417 20898443 -176296989 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 744 228 100 0 0 chr1 20898551 20898591 -176296841 + (T)n Simple_repeat Simple_repeat 1 40 0 6 744 234 91 0 0 chr1 20898932 20898965 -176296467 + (CTTTG)n Simple_repeat Simple_repeat 3 35 0 6 744 272 253 183 21 chr1 20898965 20899058 -176296374 - PB1D7 SINE Alu -12 108 1 6 744 337 300 108 0 chr1 20900040 20900160 -176295272 + ID_B1 SINE B4 80 212 -12 6 744 279 0 0 0 chr1 20900160 20900191 -176295241 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 6 744 390 254 58 29 chr1 20900752 20900890 -176294542 - B1F SINE Alu -7 142 1 6 744 290 343 26 71 chr1 20900897 20901051 -176294381 - L2a LINE L2 0 3426 3280 6 744 634 245 127 12 chr1 20901106 20901271 -176294161 + B3 SINE B2 1 184 -32 6 744 896 261 97 75 chr1 20901313 20901724 -176293708 + L1MB2 LINE L1 5476 5895 -276 6 744 320 328 128 0 chr1 20901850 20901975 -176293457 - RSINE1 SINE B4 0 165 25 6 744 345 128 25 25 chr1 20902497 20902577 -176292855 + GA-rich Low_complexity Low_complexity 2 81 0 6 744 330 45 0 0 chr1 20903105 20903149 -176292283 + (A)n Simple_repeat Simple_repeat 1 44 0 6 744 744 210 0 0 chr1 20903952 20904119 -176291313 + CT-rich Low_complexity Low_complexity 2 168 0 6 744 3497 219 171 7 chr1 20904120 20904994 -176290438 - RMER1A Other Other -13 1017 1 6 744 505 299 0 0 chr1 20904996 20905103 -176290329 - RMER1A Other Other -780 250 144 6 744 261 338 13 0 chr1 20905627 20905642 -176289790 - ID4_ SINE ID 0 83 8 6 744 296 250 17 0 chr1 20905642 20905702 -176289730 - tRNA-Ala-GCY_ tRNA tRNA -13 62 2 7 744 2087 154 2 35 chr1 20906012 20906410 -176289022 + MTB_Mm LTR MaLR 21 405 -2 7 744 378 0 0 0 chr1 20907563 20907605 -176287827 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 744 240 35 0 0 chr1 20908055 20908084 -176287348 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 744 412 186 35 0 chr1 20908084 20908170 -176287262 - B1_Mur4 SINE Alu -13 137 49 7 744 198 0 0 0 chr1 20908182 20908204 -176287228 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 744 418 216 43 50 chr1 20908278 20908419 -176287013 - ID_B1 SINE B4 -2 222 83 7 744 5218 32 0 0 chr1 20908829 20909430 -176286002 - L1Md_T LINE L1 0 6582 5982 7 744 569 314 12 58 chr1 20909655 20909898 -176285534 + MLT1A0 LTR MaLR 122 353 -12 7 744 647 253 12 19 chr1 20910379 20910540 -176284892 - RSINE1 SINE B4 -2 163 4 7 744 571 286 0 0 chr1 20910569 20910688 -176284744 - B1F SINE Alu -20 129 11 7 744 22 0 0 0 chr1 20911828 20911850 -176283582 + AT_rich Low_complexity Low_complexity 1 22 0 7 744 461 244 67 30 chr1 20913777 20913912 -176281520 + B3 SINE B2 13 152 -64 7 744 1097 237 0 9 chr1 20914201 20914418 -176281014 + B3 SINE B2 1 215 -1 7 744 663 197 45 8 chr1 20914490 20914623 -176280809 - B1F2 SINE Alu -10 139 2 7 744 750 167 33 46 chr1 20914854 20915005 -176280427 - B1_Mur4 SINE Alu 0 150 2 7 744 1310 51 96 6 chr1 20915522 20915700 -176279732 - B2_Mm2 SINE B2 0 195 2 7 744 963 140 14 53 chr1 20919180 20919381 -176276051 - B2_Mm2 SINE B2 -13 203 2 7 744 1303 53 0 6 chr1 20919996 20920168 -176275264 - L1Md_F2 LINE L1 -8 6574 6404 7 744 4384 55 0 0 chr1 20920168 20920693 -176274739 + L1Md_F2 LINE L1 5820 6344 -238 7 744 771 245 25 45 chr1 20920711 20920912 -176274520 - B3A SINE B2 -1 197 1 7 744 611 103 10 0 chr1 20921146 20921243 -176274189 + (TC)n Simple_repeat Simple_repeat 2 99 0 7 744 341 249 14 0 chr1 20921809 20921903 -176273529 + PB1D10 SINE Alu 25 127 0 7 744 295 256 18 55 chr1 20921920 20922068 -176273364 + B3A SINE B2 1 211 -5 7 744 197 307 96 11 chr1 20922468 20922603 -176272829 - MIR SINE MIR -78 190 44 7 744 1170 37 0 0 chr1 20923180 20923316 -176272116 + B1_Mus1 SINE Alu 2 137 -11 7 744 447 333 7 28 chr1 20923400 20923545 -176271887 + RSINE1 SINE B4 3 144 -21 7 744 276 30 0 0 chr1 20923549 20923582 -176271850 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 744 288 53 0 0 chr1 20923997 20924035 -176271397 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 744 503 73 12 35 chr1 20924037 20924122 -176271310 - B1_Mm SINE Alu 0 147 65 7 744 581 220 170 41 chr1 20925893 20926087 -176269345 + ID_B1 SINE B4 2 220 -4 7 744 524 227 0 77 chr1 20927984 20928127 -176267305 - B1_Mur2 SINE Alu 0 149 18 7 744 380 198 18 54 chr1 20928991 20929103 -176266329 - PB1D10 SINE Alu -1 116 9 7 744 238 280 9 74 chr1 20929009 20929117 -176266315 - ID_B1 SINE B4 -45 179 79 7 744 228 48 95 0 chr1 20930493 20930556 -176264876 + (CAGCC)n Simple_repeat Simple_repeat 2 70 0 7 744 952 228 14 5 chr1 20930803 20931010 -176264422 - B3 SINE B2 -6 210 2 7 744 682 220 162 16 chr1 20931015 20931200 -176264232 - ID_B1 SINE B4 -8 216 5 7 744 678 270 93 93 chr1 20932847 20933104 -176262328 + B4 SINE B4 34 290 -2 7 744 660 252 20 0 chr1 20933234 20933385 -176262047 + B3 SINE B2 59 212 -4 7 744 246 32 0 0 chr1 20933386 20933417 -176262015 + (CAA)n Simple_repeat Simple_repeat 1 31 0 7 744 21 0 0 0 chr1 20933644 20933665 -176261767 + AT_rich Low_complexity Low_complexity 1 21 0 7 744 205 154 202 71 chr1 20933684 20933768 -176261664 - MIRc SINE MIR -110 158 64 7 744 317 304 137 0 chr1 20933770 20933872 -176261560 - B1_Mur4 SINE Alu -34 116 1 7 744 762 11 0 0 chr1 20933937 20934024 -176261408 + (TTC)n Simple_repeat Simple_repeat 2 88 0 7 744 234 315 71 18 chr1 20934068 20934181 -176261251 - L1MC5 LINE L1 -46 7915 7797 7 744 293 245 99 30 chr1 20934308 20934409 -176261023 - ID_B1 SINE B4 -14 210 103 7 744 387 264 132 0 chr1 20934319 20934425 -176261007 - B1F SINE Alu -29 120 1 7 744 397 263 59 59 chr1 20934453 20934655 -176260777 - L1MC5 LINE L1 -277 7684 7483 7 744 558 109 0 0 chr1 20934829 20934930 -176260502 + (TC)n Simple_repeat Simple_repeat 2 102 0 7 744 795 75 0 0 chr1 20934931 20935038 -176260394 + (CATATA)n Simple_repeat Simple_repeat 5 111 0 7 744 2210 83 10 0 chr1 20935039 20935351 -176260081 - ORR1A2 LTR MaLR -8 319 5 7 744 282 195 23 11 chr1 20935354 20935442 -176259990 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 744 216 0 0 0 chr1 20935471 20935495 -176259937 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 744 405 0 0 0 chr1 20935495 20935539 -176259893 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 744 1581 126 251 19 chr1 20936483 20936790 -176258642 - ORR1C1 LTR MaLR 0 378 1 7 744 341 218 12 25 chr1 20937038 20937118 -176258314 - B4A SINE B4 -212 80 2 7 744 2090 159 78 8 chr1 20937155 20937541 -176257891 - MTC LTR MaLR -8 413 1 7 744 264 246 15 0 chr1 20937545 20937610 -176257822 - ID_B1 SINE B4 -66 158 93 7 744 468 284 37 64 chr1 20937992 20938180 -176257252 - Lx8 LINE L1 -301 7172 6990 7 744 226 280 147 0 chr1 20938207 20938282 -176257150 - PB1D10 SINE Alu -1 116 31 7 744 255 278 118 32 chr1 20939228 20939321 -176256111 + B1_Mur2 SINE Alu 49 149 0 7 744 183 80 0 0 chr1 20939329 20939354 -176256078 + (GGA)n Simple_repeat Simple_repeat 3 27 0 7 744 1355 204 173 81 chr1 20939545 20939966 -176255466 + MT2A LTR ERVL 1 460 -73 7 744 421 110 24 0 chr1 20939974 20940056 -176255376 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 744 311 126 0 0 chr1 20940574 20940628 -176254804 + MT2A LTR ERVL 487 562 0 7 744 202 254 15 31 chr1 20941638 20941703 -176253729 + C-rich Low_complexity Low_complexity 6 69 0 7 744 354 221 106 0 chr1 20942533 20942637 -176252795 - PB1D10 SINE Alu -2 115 1 7 744 24 0 0 0 chr1 20942695 20942719 -176252713 + AT_rich Low_complexity Low_complexity 1 24 0 7 744 427 252 36 0 chr1 20942721 20942832 -176252600 + PB1D7 SINE Alu 3 117 -3 7 744 264 325 0 0 chr1 20942870 20942950 -176252482 + B4A SINE B4 9 88 -204 7 744 325 267 121 0 chr1 20943184 20943300 -176252132 - ID_B1 SINE B4 -4 220 91 7 744 234 0 0 0 chr1 20943665 20943691 -176251741 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 744 273 345 17 17 chr1 20943691 20943806 -176251626 - B1_Mur3 SINE Alu -13 136 22 7 744 525 236 47 0 chr1 20945153 20945280 -176250152 + B3A SINE B2 1 133 -65 7 744 456 67 0 0 chr1 20945958 20946018 -176249414 + (CTCA)n Simple_repeat Simple_repeat 4 63 0 7 744 726 128 0 0 chr1 20946592 20946709 -176248723 + (TCCA)n Simple_repeat Simple_repeat 4 120 0 7 744 741 53 0 0 chr1 20947040 20947134 -176248298 + (TC)n Simple_repeat Simple_repeat 1 94 0 7 744 833 44 175 0 chr1 20947135 20947249 -176248183 - B1_Mus1 SINE Alu -13 135 2 7 744 758 243 11 28 chr1 20947307 20947485 -176247947 + B3 SINE B2 4 178 -38 7 744 201 214 44 22 chr1 20947487 20947578 -176247854 + (CAAA)n Simple_repeat Simple_repeat 3 95 0 7 744 412 247 8 0 chr1 20947599 20947712 -176247720 - PB1D10 SINE Alu -2 115 3 7 744 709 215 20 7 chr1 20947975 20948125 -176247307 + B3A SINE B2 1 152 -46 7 744 228 35 0 0 chr1 20948156 20948185 -176247247 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 744 405 0 0 0 chr1 20948186 20948231 -176247201 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 744 203 259 44 106 chr1 20948552 20948712 -176246720 + L2 LINE L2 2425 2574 -845 7 744 584 14 14 0 chr1 20948921 20948994 -176246438 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 744 196 330 65 19 chr1 20949315 20949423 -176246009 + MIR3 SINE MIR 51 163 -45 7 744 666 75 0 0 chr1 20950929 20951022 -176244410 + (TA)n Simple_repeat Simple_repeat 2 94 0 7 744 304 292 131 0 chr1 20951592 20951722 -176243710 - RSINE1 SINE B4 -16 149 3 7 744 2619 151 7 7 chr1 20951858 20952279 -176243153 - MTC LTR MaLR 0 421 1 7 744 230 0 0 32 chr1 20952706 20952737 -176242695 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 744 413 231 79 40 chr1 20952777 20952903 -176242529 - B1_Mur1 SINE Alu -7 142 12 7 744 354 250 0 0 chr1 20952938 20953018 -176242414 - B1F SINE Alu -5 144 65 7 744 24078 98 3 21 chr1 20953018 20956979 -176238453 - L1VL4 LINE L1 -1279 4604 725 7 744 444 258 15 8 chr1 20956987 20957120 -176238312 - L1VL4 LINE L1 -5813 803 670 7 744 389 244 37 167 chr1 20957200 20957362 -176238070 - L1VL1 LINE L1 -6068 354 214 7 744 247 268 72 0 chr1 20957958 20958055 -176237377 - B1F SINE Alu 0 149 46 7 744 233 184 321 55 chr1 20958157 20958266 -176237166 - B1F1 SINE Alu -11 138 1 7 744 419 0 20 0 chr1 20958623 20958674 -176236758 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 744 320 213 130 30 chr1 20958678 20958847 -176236585 + L1MA6 LINE L1 3136 3321 -2819 7 744 594 238 112 84 chr1 20958906 20959085 -176236347 + B3A SINE B2 3 186 -9 7 744 276 226 58 72 chr1 20959087 20959225 -176236207 + L1MA6 LINE L1 3335 3470 -2673 7 744 418 239 0 25 chr1 20959241 20959361 -176236071 + L1MA6 LINE L1 3881 3997 -2146 7 744 499 263 105 34 chr1 20959420 20959529 -176235903 + L1MA6 LINE L1 4959 5087 -1056 7 744 657 86 0 0 chr1 20959529 20959622 -176235810 + (TTG)n Simple_repeat Simple_repeat 2 94 0 7 744 499 263 105 34 chr1 20959622 20959835 -176235597 + L1MA6 LINE L1 5088 5304 -839 7 744 568 233 0 8 chr1 20960061 20960178 -176235254 + B3 SINE B2 1 116 -100 7 744 1240 242 52 78 chr1 20960178 20960286 -176235146 + L1MA6 LINE L1 5536 5647 -653 7 744 333 0 0 0 chr1 20960286 20960323 -176235109 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 744 1240 242 52 78 chr1 20960323 20960624 -176234808 + L1MA6 LINE L1 5648 5934 -366 7 744 578 186 26 26 chr1 20960624 20960740 -176234692 + PB1D7 SINE Alu 5 120 0 8 744 1240 242 52 78 chr1 20960740 20960813 -176234619 + L1MA6 LINE L1 5935 6006 -294 7 744 536 282 47 76 chr1 20960814 20961025 -176234407 + B4A SINE B4 1 205 -87 8 744 233 29 29 0 chr1 20961138 20961172 -176234260 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 744 252 228 74 25 chr1 20961188 20961269 -176234163 + L1MA6 LINE L1 6056 6140 -160 7 744 233 252 122 65 chr1 20961394 20961517 -176233915 + L1MA6 LINE L1 6124 6253 -47 7 744 765 192 0 64 chr1 20961541 20961697 -176233735 - B1_Mur3 SINE Alu -3 146 1 8 744 2867 72 2 15 chr1 20962341 20962737 -176232695 + L1_Mus3 LINE L1 6246 6636 -2 8 744 902 159 21 0 chr1 20963806 20963951 -176231481 - B1_Mur4 SINE Alu -2 148 1 8 744 600 272 89 48 chr1 20964189 20964482 -176230950 - L1M4c LINE L1 -4489 1895 1591 8 744 420 240 19 9 chr1 20964510 20964615 -176230817 - RSINE1 SINE B4 -33 132 27 8 744 498 241 28 7 chr1 20964644 20964786 -176230646 - L1M4c LINE L1 -5433 951 807 8 744 248 267 33 0 chr1 20964809 20964869 -176230563 - PB1D10 SINE Alu -1 116 55 8 744 274 152 0 0 chr1 20965329 20965375 -176230057 - B3 SINE B2 -7 209 164 8 744 927 276 23 37 chr1 20965560 20965925 -176229507 + RLTR18B LTR ERVK 144 487 -25 8 744 277 253 57 11 chr1 20965963 20966051 -176229381 - B3 SINE B2 -48 168 77 8 744 1604 156 18 65 chr1 20966052 20966388 -176229044 - ORR1A4 LTR MaLR -8 321 2 8 744 473 266 0 0 chr1 20966388 20966468 -176228964 - B3 SINE B2 -121 95 16 8 744 1343 85 11 0 chr1 20966555 20966732 -176228700 + B2_Mm1t SINE B2 1 179 -14 8 744 381 299 59 32 chr1 20966943 20967164 -176228268 + L1M4 LINE L1 3930 4156 -1990 8 744 926 247 87 38 chr1 20967316 20967661 -176227771 + ORR1D1 LTR MaLR 1 362 -12 8 744 625 174 74 22 chr1 20968053 20968188 -176227244 - B1_Mur3 SINE Alu 0 149 8 8 744 355 223 73 21 chr1 20968493 20968589 -176226843 + MER102b DNA MER1_type 145 245 -96 8 744 601 202 48 0 chr1 20969236 20969360 -176226072 + B1_Mus1 SINE Alu 19 148 0 8 744 431 289 103 85 chr1 20969768 20970040 -176225392 - B4A SINE B4 -15 277 1 8 744 306 345 73 62 chr1 20970514 20970789 -176224643 - L2 LINE L2 -367 3052 2775 8 744 365 210 220 0 chr1 20970795 20970895 -176224537 + ID_B1 SINE B4 80 201 -23 8 744 864 164 29 29 chr1 20971022 20971192 -176224240 + B2_Mm2 SINE B2 1 170 -25 8 744 193 279 89 0 chr1 20971289 20971368 -176224064 - L2 LINE L2 -824 2595 2510 8 745 223 224 149 23 chr1 20971572 20971659 -176223773 + PB1D9 SINE Alu 17 114 -6 8 745 944 240 36 141 chr1 20971872 20972261 -176223171 - ORR1D2 LTR MaLR 0 370 23 8 745 278 109 31 53 chr1 20972261 20972337 -176223095 - MT2A LTR ERVL 0 555 468 8 745 822 197 4 180 chr1 20972335 20972607 -176222825 - MT2A LTR ERVL -309 224 1 8 745 593 284 81 11 chr1 20972743 20972928 -176222504 - ID_B1 SINE B4 -15 209 12 8 745 1312 91 0 21 chr1 20973015 20973205 -176222227 - B2_Mm2 SINE B2 -7 188 3 8 745 477 0 0 0 chr1 20973697 20973750 -176221682 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 745 203 316 0 0 chr1 20973870 20973927 -176221505 + GA-rich Low_complexity Low_complexity 4 60 0 8 745 259 223 16 16 chr1 20973941 20974065 -176221367 + GA-rich Low_complexity Low_complexity 1 124 0 8 745 230 362 12 0 chr1 20974355 20974435 -176220997 + ID4 SINE ID 1 81 -2 8 745 181 258 90 15 chr1 20974799 20974866 -176220566 - L2 LINE L2 -2027 1392 1321 8 745 462 18 0 0 chr1 20974904 20974959 -176220473 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 745 468 0 0 0 chr1 20975353 20975405 -176220027 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 745 577 276 0 0 chr1 20975407 20975534 -176219898 + B3 SINE B2 82 208 -8 8 745 934 144 7 0 chr1 20975753 20975892 -176219540 + B1_Mus1 SINE Alu 1 140 -8 8 745 291 288 12 0 chr1 20977040 20977120 -176218312 + ID_B1 SINE B4 144 224 0 8 745 28 0 0 0 chr1 20977147 20977175 -176218257 + AT_rich Low_complexity Low_complexity 1 28 0 8 745 217 51 51 0 chr1 20977234 20977273 -176218159 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 745 394 303 9 0 chr1 20977894 20978003 -176217429 + PB1D10 SINE Alu 1 110 -7 8 745 772 183 112 25 chr1 20978485 20978681 -176216751 - B3 SINE B2 -2 214 2 8 745 553 265 114 11 chr1 20980956 20981219 -176214213 + MLT2B4 LTR ERVL 3 292 -264 8 745 345 304 111 74 chr1 20982647 20982917 -176212515 + B4 SINE B4 2 281 -11 8 745 1908 112 27 33 chr1 20982959 20983290 -176212142 - ORR1A4 LTR MaLR 0 329 1 8 745 462 18 0 0 chr1 20983299 20983354 -176212078 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 8 745 1898 154 21 24 chr1 20983644 20984016 -176211416 - ORR1C1 LTR MaLR -7 371 1 8 745 894 66 2 1 chr1 20984770 20984900 -176210532 + B1_Mus1 SINE Alu 19 148 0 8 745 180 167 0 0 chr1 20984900 20984948 -176210484 + A-rich Low_complexity Low_complexity 1 48 0 8 745 267 276 137 61 chr1 20985051 20985182 -176210250 + B1_Mur1 SINE Alu 1 141 -8 8 745 397 226 111 16 chr1 20985210 20985322 -176210110 + B1F1 SINE Alu 5 121 -28 8 745 432 0 0 0 chr1 20985322 20985370 -176210062 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 8 745 397 226 111 16 chr1 20985370 20985383 -176210049 + B1F1 SINE Alu 122 141 -8 8 745 207 102 0 71 chr1 20985998 20986015 -176209417 + (CCAA)n Simple_repeat Simple_repeat 2 17 0 8 745 778 182 29 7 chr1 20986015 20986153 -176209279 + B1_Mur1 SINE Alu 1 141 -8 8 745 207 102 0 71 chr1 20986153 20986177 -176209255 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 8 745 203 261 14 0 chr1 20986269 20986338 -176209094 + A-rich Low_complexity Low_complexity 3 72 0 8 745 201 74 0 0 chr1 20987692 20987719 -176207713 + (A)n Simple_repeat Simple_repeat 1 27 0 8 745 186 43 0 0 chr1 20988661 20988684 -176206748 + (CTG)n Simple_repeat Simple_repeat 1 23 0 8 745 471 199 0 37 chr1 20991225 20991361 -176204071 + G-rich Low_complexity Low_complexity 2 132 0 8 745 876 138 28 0 chr1 20992169 20992314 -176203118 + B1_Mur3 SINE Alu 1 149 0 8 745 1005 226 126 26 chr1 20997434 20997769 -176197663 + MTE2b LTR MaLR 1 365 -14 8 745 327 49 0 0 chr1 20998801 20998842 -176196590 + (TGG)n Simple_repeat Simple_repeat 1 41 0 8 745 216 0 0 0 chr1 20999506 20999530 -176195902 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 745 681 13 0 0 chr1 20999731 20999809 -176195623 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 8 745 286 252 28 52 chr1 21000048 21000150 -176195282 + B3 SINE B2 21 124 -71 1 745 198 296 86 66 chr1 21000681 21000833 -176194599 - L2 LINE L2 -575 2844 2690 2 745 389 320 32 82 chr1 21002114 21002396 -176193036 + ORR1E LTR MaLR 81 348 -11 3 745 194 227 0 64 chr1 21002803 21002850 -176192582 - L4 LINE RTE -1336 693 650 4 745 259 253 140 0 chr1 21003824 21003927 -176191505 + MIRc SINE MIR 78 192 -76 5 745 516 261 310 38 chr1 21004037 21004323 -176191109 + MTEb LTR MaLR 16 375 -4 6 745 243 0 0 0 chr1 21004345 21004372 -176191060 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 745 181 396 98 10 chr1 21004392 21004494 -176190938 + MIRb SINE MIR 157 267 -1 8 745 467 83 28 0 chr1 21005181 21005253 -176190179 + (CATA)n Simple_repeat Simple_repeat 1 74 0 9 745 593 263 81 21 chr1 21005757 21006034 -176189398 + L1M3 LINE L1 5371 5674 -626 1 745 828 263 103 40 chr1 21006035 21006308 -176189124 + B4 SINE B4 2 291 -1 1 745 32945 73 11 12 chr1 21006348 21011322 -176184110 + L1Md_F2 LINE L1 625 5586 -297 1 745 7861 56 12 0 chr1 21011322 21012306 -176183126 + L1Md_F2 LINE L1 5587 6582 0 1 745 776 163 15 8 chr1 21012531 21012661 -176182771 + B1_Mus1 SINE Alu 1 131 -17 1 745 300 70 0 0 chr1 21012664 21012707 -176182725 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 745 603 283 144 21 chr1 21012715 21013098 -176182334 + L1MB2 LINE L1 5738 6167 -4 1 745 3061 20 9 0 chr1 21013871 21014214 -176181218 - ORR1A0 LTR MaLR 0 346 1 1 745 604 242 89 40 chr1 21014241 21014443 -176180989 + B3 SINE B2 1 212 -4 1 745 711 123 136 15 chr1 21014481 21014613 -176180819 + B1_Mur4 SINE Alu 2 149 -1 1 745 265 286 15 103 chr1 21015356 21015527 -176179905 - MER102a DNA MER1_type -188 142 4 1 745 203 208 42 0 chr1 21015530 21015578 -176179854 + L3b LINE CR1 430 479 -3 2 745 471 39 0 105 chr1 21015724 21015895 -176179537 + (CAGGG)n Simple_repeat Simple_repeat 3 155 0 2 745 373 284 6 30 chr1 21015991 21016047 -176179385 + polypurine Low_complexity Low_complexity 2 55 0 2 745 360 0 0 0 chr1 21016047 21016087 -176179345 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 745 373 284 6 30 chr1 21016087 21016197 -176179235 + GA-rich Low_complexity Low_complexity 56 163 0 2 745 348 269 49 97 chr1 21016214 21016358 -176179074 + HAL1-3A_ME LINE L1 1976 2112 -746 2 745 222 37 0 0 chr1 21016372 21016399 -176179033 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 2 745 246 160 0 0 chr1 21016407 21016457 -176178975 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 745 603 40 0 0 chr1 21016457 21016531 -176178901 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 745 862 307 44 24 chr1 21016613 21017065 -176178367 + L1MC LINE L1 5261 5725 -2157 2 745 262 250 18 83 chr1 21017591 21017700 -176177732 + MT2B LTR ERVL 146 247 -354 3 745 445 189 65 22 chr1 21017618 21017710 -176177722 + PB1D10 SINE Alu 10 105 -12 3 745 227 31 31 0 chr1 21017792 21017824 -176177608 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 3 745 640 254 103 8 chr1 21017830 21018006 -176177426 + B3A SINE B2 2 200 -16 3 745 312 127 0 0 chr1 21018532 21018587 -176176845 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 745 762 244 114 81 chr1 21018707 21019005 -176176427 + MLT1B LTR MaLR 2 309 -81 3 745 436 100 86 0 chr1 21019864 21019934 -176175498 + URR1A DNA MER1_type 44 119 -107 3 745 854 123 344 75 chr1 21020085 21020383 -176175049 + ORR1D1 LTR MaLR 7 384 0 3 745 582 92 240 16 chr1 21020644 21020765 -176174667 - B1_Mur4 SINE Alu 0 150 3 3 745 188 263 0 0 chr1 21020768 21020806 -176174626 - MER5A DNA MER1_type -114 75 38 3 745 1749 130 77 32 chr1 21021196 21021506 -176173926 + ORR1A4 LTR MaLR 6 329 0 4 745 294 289 113 19 chr1 21021555 21021661 -176173771 + B1F1 SINE Alu 2 149 0 4 745 241 245 171 9 chr1 21021712 21021823 -176173609 - MER53 DNA hAT -62 131 3 4 745 641 228 0 7 chr1 21022044 21022181 -176173251 + MLT1C LTR MaLR 1 136 -331 4 745 348 83 0 0 chr1 21022943 21022991 -176172441 + (T)n Simple_repeat Simple_repeat 1 48 0 4 745 1043 65 65 0 chr1 21022991 21023129 -176172303 - B1_Mus1 SINE Alu 0 148 2 4 745 254 264 0 0 chr1 21023466 21023519 -176171913 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 745 427 301 38 0 chr1 21023928 21024061 -176171371 + B1F2 SINE Alu 1 138 -11 4 745 499 319 56 50 chr1 21024071 21024229 -176171203 + L1_Mur3 LINE L1 5177 5325 -555 4 745 1434 71 14 9 chr1 21024229 21024443 -176170989 + L1_Mus3 LINE L1 6421 6635 -3 4 745 499 319 56 50 chr1 21024443 21024641 -176170791 + L1_Mur3 LINE L1 5326 5535 -345 4 745 492 287 111 20 chr1 21024640 21024919 -176170513 + L1MA4 LINE L1 5635 5936 -364 5 745 661 211 4 15 chr1 21024930 21025194 -176170238 + (TG)n Simple_repeat Simple_repeat 1 260 0 5 745 926 239 24 0 chr1 21025436 21025641 -176169791 + B3 SINE B2 2 211 -5 5 745 269 244 48 12 chr1 21025886 21025969 -176169463 + GA-rich Low_complexity Low_complexity 1 86 0 5 745 227 306 84 110 chr1 21026482 21026636 -176168796 + MER102b DNA MER1_type 4 153 -188 5 745 393 259 20 130 chr1 21026894 21027094 -176168338 + MTEa LTR MaLR 196 373 -6 5 745 185 254 65 78 chr1 21028560 21028637 -176166795 + MIRb SINE MIR 80 155 -113 5 745 1445 239 95 15 chr1 21030078 21030477 -176164955 + MER82 DNA MER2_type 57 487 -166 5 745 288 0 0 0 chr1 21030660 21030692 -176164740 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 745 309 82 0 0 chr1 21030692 21030741 -176164691 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 745 253 318 68 0 chr1 21030743 21030831 -176164601 - LTR48 LTR ERV1 -633 154 61 6 745 253 339 58 25 chr1 21030885 21031006 -176164426 - B4A SINE B4 -150 142 18 6 745 594 39 0 0 chr1 21032257 21032334 -176163098 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 745 252 0 0 0 chr1 21032334 21032361 -176163071 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 745 200 315 53 63 chr1 21032570 21032665 -176162767 + MIRc SINE MIR 60 153 -115 6 745 190 278 19 0 chr1 21032672 21032726 -176162706 - MIRb SINE MIR -18 250 196 6 745 311 252 61 26 chr1 21034407 21034521 -176160911 - L5 LINE RTE -117 2148 2031 6 745 703 119 85 31 chr1 21035181 21035311 -176160121 - URR1B DNA MER1_type -3 222 86 6 745 261 0 0 0 chr1 21035680 21035709 -176159723 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 745 1759 184 86 25 chr1 21035807 21035860 -176159572 - ORR1C2 LTR MaLR 0 384 330 6 745 3839 61 48 2 chr1 21035860 21036355 -176159077 - L1_Mus1 LINE L1 0 6567 6050 7 745 1759 184 86 25 chr1 21036355 21036488 -176158944 - ORR1C2 LTR MaLR -55 329 173 6 745 564 42 0 0 chr1 21036488 21036559 -176158873 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 745 1759 184 86 25 chr1 21036559 21036733 -176158699 - ORR1C2 LTR MaLR -212 172 2 6 745 538 273 58 0 chr1 21036932 21037053 -176158379 + B1F SINE Alu 12 139 -10 7 745 314 268 30 30 chr1 21038916 21039016 -176156416 + B1F SINE Alu 27 126 -23 7 745 205 241 69 0 chr1 21039494 21039552 -176155880 - MIRc SINE MIR -138 130 69 7 745 520 307 76 90 chr1 21040114 21040404 -176155028 + B4 SINE B4 3 288 -4 7 745 183 42 0 0 chr1 21040458 21040482 -176154950 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 745 638 224 13 40 chr1 21040784 21040933 -176154499 + B1_Mur2 SINE Alu 3 147 -2 7 745 201 39 0 0 chr1 21040950 21040976 -176154456 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 745 1178 153 8 35 chr1 21041451 21041716 -176153716 - ORR1C1 LTR MaLR 0 378 1 7 745 195 100 0 0 chr1 21042257 21042287 -176153145 + (CAG)n Simple_repeat Simple_repeat 3 32 0 8 745 526 198 76 45 chr1 21042619 21042751 -176152681 - B1F SINE Alu -10 139 4 8 745 183 80 0 0 chr1 21043601 21043626 -176151806 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 745 441 95 0 0 chr1 21043626 21043689 -176151743 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 745 488 314 39 22 chr1 21044141 21044320 -176151112 - B3A SINE B2 -16 182 1 8 745 26 0 0 0 chr1 21045038 21045064 -176150368 + AT_rich Low_complexity Low_complexity 1 26 0 8 745 416 241 45 84 chr1 21045087 21045241 -176150191 - B1F SINE Alu -1 148 1 8 745 812 191 6 0 chr1 21045478 21045651 -176149781 + (TA)n Simple_repeat Simple_repeat 1 174 0 8 745 458 175 0 70 chr1 21045657 21045743 -176149689 - RSINE1 SINE B4 -83 82 3 8 745 393 289 60 53 chr1 21045835 21045985 -176149447 + ID_B1 SINE B4 3 153 -71 8 745 288 0 0 0 chr1 21046583 21046615 -176148817 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 745 645 209 7 58 chr1 21046841 21046940 -176148492 - B1_Mur1 SINE Alu -15 134 37 9 745 2054 135 31 20 chr1 21046940 21046972 -176148460 + RLTR15 LTR ERVK 1 43 -316 9 745 189 0 0 0 chr1 21046972 21046993 -176148439 + (TAA)n Simple_repeat Simple_repeat 1 21 0 9 745 2054 135 31 20 chr1 21046993 21047315 -176148117 + RLTR15 LTR ERVK 44 358 -1 9 745 645 209 7 58 chr1 21047315 21047352 -176148080 - B1_Mur1 SINE Alu -113 36 5 9 745 288 186 0 0 chr1 21047376 21047435 -176147997 + GA-rich Low_complexity Low_complexity 2 60 0 9 745 201 74 0 0 chr1 21047429 21047456 -176147976 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 9 745 273 79 0 0 chr1 21047868 21047906 -176147526 - U5 snRNA snRNA -75 41 4 9 745 1007 51 22 7 chr1 21047901 21048040 -176147392 + B1_Mus1 SINE Alu 8 148 0 9 745 1559 164 141 10 chr1 21048365 21048678 -176146754 + ORR1B1 LTR MaLR 41 394 0 9 745 609 225 39 8 chr1 21048678 21048808 -176146624 + B1F1 SINE Alu 12 145 -4 9 745 296 288 65 52 chr1 21048889 21049043 -176146389 - MIR SINE MIR -17 245 90 1 745 339 318 0 0 chr1 21050399 21050484 -176144948 - B1F1 SINE Alu -62 87 3 1 745 1416 89 16 0 chr1 21050946 21051137 -176144295 - B2_Mm2 SINE B2 -1 194 1 1 745 492 274 51 0 chr1 21051334 21051451 -176143981 + ID_B1 SINE B4 97 219 -5 1 745 1367 270 76 17 chr1 21052337 21052811 -176142621 + L1MB7 LINE L1 5619 6120 -64 1 745 506 279 153 17 chr1 21053226 21053467 -176141965 + Lx8 LINE L1 7200 7473 0 1 745 269 214 99 14 chr1 21053818 21053889 -176141543 + L1MC LINE L1 5694 5770 -2112 1 745 200 122 24 0 chr1 21054057 21054098 -176141334 + (TTA)n Simple_repeat Simple_repeat 3 44 0 1 745 692 253 31 31 chr1 21054139 21054298 -176141134 - RSINE1 SINE B4 -5 160 2 1 745 565 174 17 17 chr1 21054967 21055084 -176140348 + PB1D10 SINE Alu 1 117 0 1 745 1313 134 46 9 chr1 21055710 21055928 -176139504 + URR1A DNA MER1_type 1 226 0 1 745 1893 175 88 3 chr1 21057452 21057836 -176137596 + MTD LTR MaLR 3 419 0 1 745 23 0 0 0 chr1 21058892 21058915 -176136517 + AT_rich Low_complexity Low_complexity 1 23 0 1 745 194 327 173 18 chr1 21058933 21059101 -176136331 - MIR SINE MIR -58 204 11 1 745 342 0 0 0 chr1 21059394 21059432 -176136000 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 745 279 0 0 0 chr1 21059432 21059462 -176135970 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 745 300 315 10 73 chr1 21059475 21059571 -176135861 - RSINE1 SINE B4 -74 91 2 1 745 290 184 0 0 chr1 21059649 21059698 -176135734 - B1_Mus2 SINE Alu -10 137 89 1 745 211 167 0 45 chr1 21060476 21060520 -176134912 + (CCCA)n Simple_repeat Simple_repeat 2 43 0 1 745 239 118 0 56 chr1 21061347 21061401 -176134031 + A-rich Low_complexity Low_complexity 1 51 0 1 745 228 308 0 117 chr1 21061450 21061471 -176133961 + MT2B2 LTR ERVL 150 158 -426 1 745 488 234 35 18 chr1 21061471 21061584 -176133848 + PB1D7 SINE Alu 4 118 -2 1 745 640 223 23 20 chr1 21061595 21061728 -176133704 + B1_Mur1 SINE Alu 8 136 -13 1 745 217 0 0 57 chr1 21061728 21061763 -176133669 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1 745 285 262 12 12 chr1 21061776 21061857 -176133575 + ID2 SINE ID 2 82 -1 1 745 701 250 153 4 chr1 21061883 21062132 -176133300 + B4A SINE B4 3 288 -4 1 745 885 267 60 48 chr1 21062172 21062506 -176132926 + MLT1A0 LTR MaLR 1 338 -27 1 745 258 317 17 0 chr1 21062768 21062828 -176132604 - ID SINE ID -156 68 8 1 745 290 298 14 19 chr1 21062836 21062937 -176132495 - B1F SINE Alu -13 107 9 1 745 219 267 78 94 chr1 21063108 21063269 -176132163 + MIRc SINE MIR 15 180 -28 1 745 279 0 0 0 chr1 21066853 21066884 -176128548 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 745 208 143 26 79 chr1 21069314 21069390 -176126042 + (CCCCG)n Simple_repeat Simple_repeat 5 76 0 1 745 234 62 0 0 chr1 21070043 21070075 -176125357 + (A)n Simple_repeat Simple_repeat 1 32 0 1 745 180 0 0 0 chr1 21070469 21070489 -176124943 + (CGTG)n Simple_repeat Simple_repeat 4 23 0 1 745 430 280 162 18 chr1 21070563 21070785 -176124647 - B4 SINE B4 -36 256 3 1 745 824 269 128 31 chr1 21071546 21071998 -176123434 + MLT1F LTR MaLR 62 548 0 1 745 459 257 0 17 chr1 21072170 21072285 -176123147 + PB1D10 SINE Alu 2 114 -3 1 745 477 0 0 0 chr1 21072286 21072339 -176123093 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 745 447 304 24 8 chr1 21072454 21072580 -176122852 + B1F1 SINE Alu 17 144 -5 1 745 184 383 118 12 chr1 21072697 21072866 -176122566 - MIRc SINE MIR -76 192 6 1 745 652 273 38 76 chr1 21072954 21073216 -176122216 + Lx8 LINE L1 6945 7196 -277 1 745 248 365 35 0 chr1 21073251 21073336 -176122096 + RMER15 LTR ERVL 371 458 -117 1 745 1807 202 39 197 chr1 21073949 21074675 -176120757 + RMER19C LTR ERVK 1 611 0 1 745 729 84 18 27 chr1 21074689 21074799 -176120633 + B1_Mur3 SINE Alu 40 148 -1 1 745 450 229 124 25 chr1 21075247 21075368 -176120064 - B1_Mm SINE Alu -1 146 14 1 745 483 276 191 88 chr1 21075451 21075781 -176119651 - MLT1L LTR MaLR -66 544 181 1 745 457 266 112 9 chr1 21075982 21076193 -176119239 + L1MD3 LINE L1 7730 7964 -31 1 745 250 367 12 29 chr1 21077225 21077293 -176118139 + (TGGA)n Simple_repeat Simple_repeat 4 71 0 1 745 545 42 14 0 chr1 21077293 21077365 -176118067 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1 745 1018 190 23 11 chr1 21077365 21077639 -176117793 + (TGGA)n Simple_repeat Simple_repeat 1 277 0 1 745 225 0 0 0 chr1 21077931 21077956 -176117476 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1 745 482 200 145 8 chr1 21078035 21078166 -176117266 + B1F SINE Alu 1 149 0 1 745 303 198 10 30 chr1 21078172 21078271 -176117161 + A-rich Low_complexity Low_complexity 4 100 0 1 745 261 291 53 35 chr1 21078781 21078895 -176116537 + PB1D7 SINE Alu 5 120 0 1 745 253 377 0 27 chr1 21078907 21079057 -176116375 + GA-rich Low_complexity Low_complexity 6 151 0 1 745 208 351 45 45 chr1 21080560 21080715 -176114717 + MIR3 SINE MIR 41 195 -13 1 745 652 262 68 47 chr1 21081341 21081513 -176113919 + B3A SINE B2 2 180 -18 1 745 297 0 0 0 chr1 21081513 21081546 -176113886 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 745 652 262 68 47 chr1 21081546 21081565 -176113867 + B3A SINE B2 181 197 -1 1 745 581 204 0 28 chr1 21081820 21082001 -176113431 + G-rich Low_complexity Low_complexity 2 177 0 1 745 255 298 66 117 chr1 21082040 21082177 -176113255 + ID_B1 SINE B4 47 176 -48 1 745 384 239 68 0 chr1 21082109 21082197 -176113235 + PB1D10 SINE Alu 22 115 -2 1 745 334 306 15 69 chr1 21082675 21082805 -176112627 - RSINE1 SINE B4 0 165 43 1 745 351 354 21 45 chr1 21083422 21083608 -176111824 - MLT1E1A LTR MaLR -206 474 279 1 745 1934 137 102 0 chr1 21083860 21084175 -176111257 - ORR1B1 LTR MaLR 0 394 48 1 745 463 291 17 0 chr1 21085052 21085169 -176110263 + PB1D7 SINE Alu 1 119 -1 1 745 330 286 107 0 chr1 21085247 21085331 -176110101 - ID_B1 SINE B4 -22 202 110 1 745 343 294 37 84 chr1 21086357 21086492 -176108940 - B3 SINE B2 0 216 12 1 745 356 228 12 12 chr1 21086492 21086572 -176108860 - B4A SINE B4 -201 91 12 1 745 317 268 57 8 chr1 21086755 21086879 -176108553 - MER63D DNA AcHobo -916 145 16 1 745 296 138 15 0 chr1 21088213 21088278 -176107154 + CT-rich Low_complexity Low_complexity 1 66 0 1 745 474 311 85 8 chr1 21088320 21088579 -176106853 + L1ME3A LINE L1 5795 6073 -100 1 745 200 195 0 0 chr1 21088635 21088676 -176106756 + GA-rich Low_complexity Low_complexity 2 42 0 1 745 229 333 36 54 chr1 21088755 21088866 -176106566 + B4 SINE B4 109 217 -75 1 745 599 285 134 77 chr1 21088984 21089387 -176106045 - MLT1C LTR MaLR -39 428 3 1 745 256 292 121 47 chr1 21089571 21089705 -176105727 + MIR SINE MIR 12 154 -114 1 745 244 287 51 0 chr1 21089975 21090061 -176105371 - MIRb SINE MIR -41 227 144 1 745 245 29 29 0 chr1 21090114 21090148 -176105284 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 745 374 296 191 14 chr1 21090189 21090336 -176105096 - B3 SINE B2 -38 178 6 1 745 453 301 0 28 chr1 21090406 21090512 -176104920 + RSINE1 SINE B4 61 163 -2 1 745 483 253 0 0 chr1 21090520 21090674 -176104758 + (CA)n Simple_repeat Simple_repeat 2 155 0 1 745 261 0 0 0 chr1 21090799 21090828 -176104604 + (A)n Simple_repeat Simple_repeat 1 29 0 1 745 555 281 0 30 chr1 21092238 21092403 -176103029 + RSINE1 SINE B4 3 162 -3 1 745 468 0 0 0 chr1 21093309 21093361 -176102071 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 745 564 261 0 0 chr1 21093503 21093618 -176101814 - PB1D10 SINE Alu -2 115 1 1 745 306 300 19 103 chr1 21094467 21094498 -176100934 - B1F SINE Alu -6 143 118 1 745 268 77 0 37 chr1 21094498 21094552 -176100880 + (ATTG)n Simple_repeat Simple_repeat 4 55 0 1 745 306 300 19 103 chr1 21094552 21094641 -176100791 - B1F SINE Alu -32 117 34 1 745 2409 116 0 3 chr1 21094641 21094986 -176100446 + ORR1A1 LTR MaLR 3 346 0 1 745 306 300 19 103 chr1 21094986 21095020 -176100412 - B1F SINE Alu -116 33 1 1 745 456 269 118 0 chr1 21095037 21095156 -176100276 - ID_B1 SINE B4 -6 218 86 1 745 381 43 0 0 chr1 21095190 21095237 -176100195 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 745 532 286 27 7 chr1 21095245 21095393 -176100039 - B3A SINE B2 -47 151 1 1 745 1024 278 22 46 chr1 21095527 21095541 -176099891 - L1MA4 LINE L1 -381 5919 5909 1 745 489 34 0 0 chr1 21095541 21095600 -176099832 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 1 745 411 274 158 24 chr1 21095601 21095728 -176099704 - B1F SINE Alu -5 144 1 1 745 1024 278 22 46 chr1 21095728 21096080 -176099352 - L1MA4 LINE L1 -392 5908 5560 1 745 875 214 48 19 chr1 21096107 21096317 -176099115 - B3 SINE B2 0 216 1 1 745 412 324 218 31 chr1 21096332 21096562 -176098870 + B4A SINE B4 8 280 -12 1 745 809 293 26 15 chr1 21096736 21097006 -176098426 - B4A SINE B4 -18 274 2 1 745 440 254 60 15 chr1 21097020 21097199 -176098233 - L1MA4 LINE L1 -830 5470 5293 1 745 285 98 0 0 chr1 21097199 21097240 -176098192 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 1 745 1107 285 149 42 chr1 21097347 21097804 -176097628 - L1MA4 LINE L1 -931 5212 4718 1 745 306 0 0 0 chr1 21097804 21097838 -176097594 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 745 1107 285 149 42 chr1 21097838 21097922 -176097510 - L1MA4 LINE L1 -1426 4717 4613 1 745 303 28 0 0 chr1 21097932 21097968 -176097464 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 745 383 324 175 31 chr1 21098012 21098241 -176097191 - B4A SINE B4 -20 272 11 1 745 460 309 27 33 chr1 21098285 21098469 -176096963 - B3A SINE B2 -15 183 1 2 745 1657 266 136 32 chr1 21098641 21099290 -176096142 - Lx8 LINE L1 -2 7471 6756 2 745 3230 32 42 0 chr1 21099348 21099728 -176095704 + MTA_Mm LTR MaLR 1 396 0 2 745 447 325 65 35 chr1 21099787 21099988 -176095444 + B4A SINE B4 86 292 0 2 745 2027 195 76 3 chr1 21100169 21100549 -176094883 + MTD LTR MaLR 1 408 -11 2 745 1563 176 90 32 chr1 21100575 21100921 -176094511 + RLTR11A LTR ERVK 7 372 -156 2 745 188 214 195 35 chr1 21100926 21101013 -176094419 - L2 LINE L2 -371 3048 2948 2 745 522 0 0 0 chr1 21101457 21101515 -176093917 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 745 1112 188 9 36 chr1 21102204 21102425 -176093007 + MTC LTR MaLR 13 227 -194 2 746 396 0 0 0 chr1 21102739 21102783 -176092649 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 746 1005 218 25 21 chr1 21103688 21103902 -176091530 + B3 SINE B2 6 216 0 2 746 434 281 92 43 chr1 21104115 21104256 -176091176 - B1F SINE Alu -1 148 1 2 746 317 194 46 9 chr1 21104675 21104784 -176090648 + GA-rich Low_complexity Low_complexity 2 114 0 2 746 3661 46 5 2 chr1 21104940 21105375 -176090057 - RLTR10C LTR ERVK 0 436 1 2 746 45913 14 4 1 chr1 21105375 21110459 -176084973 - MMERVK10C-int LTR ERVK 0 7581 1885 2 746 327 155 17 0 chr1 21110466 21110524 -176084908 - MMERVK10C-int LTR ERVK -5627 1779 1721 2 746 660 242 153 72 chr1 21110508 21110894 -176084538 - MMERVK10C-int LTR ERVK -4819 2425 2079 2 746 462 144 0 43 chr1 21110984 21111078 -176084354 - MMERVK10C-int LTR ERVK -6629 952 863 2 746 751 205 5 10 chr1 21111083 21111275 -176084157 - MMERVK10C-int LTR ERVK -6662 919 729 2 746 2808 61 3 0 chr1 21111273 21111615 -176083817 - MMERVK10C-int LTR ERVK -7238 343 1 2 746 3675 44 5 2 chr1 21111615 21112050 -176083382 - RLTR10C LTR ERVK 0 436 1 2 746 413 277 9 0 chr1 21112501 21112618 -176082814 - ID_B1 SINE B4 -21 203 90 2 746 1336 32 0 0 chr1 21112831 21112989 -176082443 + L1_Mus1 LINE L1 6408 6565 -2 2 746 21 36 0 0 chr1 21113078 21113106 -176082326 + AT_rich Low_complexity Low_complexity 1 28 0 2 746 585 360 28 14 chr1 21113373 21113798 -176081634 - MLT-int LTR MaLR -1303 432 2 2 746 385 290 10 10 chr1 21113821 21113922 -176081510 - PB1D10 SINE Alu -9 108 8 2 746 210 191 0 0 chr1 21114047 21114094 -176081338 + GA-rich Low_complexity Low_complexity 2 48 0 2 746 271 295 11 11 chr1 21114178 21114267 -176081165 - MLT1A1 LTR MaLR -286 122 34 2 746 412 276 24 31 chr1 21114429 21114556 -176080876 - B1F SINE Alu -10 139 14 2 746 646 219 48 36 chr1 21114689 21114855 -176080577 + B3 SINE B2 48 215 -1 2 746 341 292 0 0 chr1 21116286 21116375 -176079057 - PB1D10 SINE Alu -24 93 5 2 746 351 0 0 0 chr1 21116518 21116557 -176078875 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 746 316 261 87 11 chr1 21117023 21117151 -176078281 + B1F SINE Alu 3 148 -1 2 746 857 118 6 0 chr1 21117462 21117631 -176077801 + (TC)n Simple_repeat Simple_repeat 1 170 0 2 746 468 0 0 0 chr1 21117757 21117809 -176077623 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 746 360 0 0 0 chr1 21117831 21117871 -176077561 + (TTTCC)n Simple_repeat Simple_repeat 5 44 0 2 746 1074 211 14 5 chr1 21117898 21118107 -176077325 + B3 SINE B2 5 215 -1 2 746 1000 268 23 108 chr1 21118229 21118626 -176076806 + MTE2a LTR MaLR 17 379 0 2 746 184 387 40 0 chr1 21118637 21118761 -176076671 + L2a LINE L2 3254 3382 -44 2 746 1327 234 30 55 chr1 21118791 21119157 -176076275 + ORR1E LTR MaLR 3 359 0 2 746 1344 195 181 3 chr1 21119479 21119833 -176075599 + MTD LTR MaLR 3 419 0 2 746 331 213 76 38 chr1 21119875 21120007 -176075425 + L1M3 LINE L1 4729 4865 -1275 2 746 663 249 46 11 chr1 21120007 21120182 -176075250 + ORR1D1 LTR MaLR 1 181 -193 2 746 542 152 0 8 chr1 21120182 21120308 -176075124 + CT-rich Low_complexity Low_complexity 2 126 0 2 746 824 191 109 21 chr1 21120309 21120501 -176074931 + ORR1D1 LTR MaLR 166 374 0 2 746 262 264 11 21 chr1 21120523 21120616 -176074816 + L1_Rod LINE L1 4861 4952 -895 2 746 24 0 0 0 chr1 21120749 21120773 -176074659 + AT_rich Low_complexity Low_complexity 1 24 0 2 746 323 200 88 62 chr1 21120788 21120868 -176074564 - ID4 SINE ID 0 83 2 2 746 2765 109 170 0 chr1 21121558 21122000 -176073432 - L1_Mus3 LINE L1 -286 6280 5764 2 746 2561 79 8 11 chr1 21122000 21122357 -176073075 + L1_Mus3 LINE L1 6275 6630 -8 2 746 406 267 34 17 chr1 21123301 21123419 -176072013 - PB1D7 SINE Alu 0 120 1 2 746 21 57 0 0 chr1 21123457 21123492 -176071940 + AT_rich Low_complexity Low_complexity 1 35 0 2 746 487 288 128 45 chr1 21123787 21124162 -176071270 + L1ME3 LINE L1 3530 3935 -2211 2 746 204 213 0 21 chr1 21124193 21124241 -176071191 + CT-rich Low_complexity Low_complexity 1 47 0 2 746 1009 231 48 108 chr1 21124243 21124843 -176070589 + RMER19C LTR ERVK 3 483 -128 2 746 8323 40 2 8 chr1 21124843 21125910 -176069522 - L1Md_F2 LINE L1 -7 6575 5515 2 746 18296 62 1 0 chr1 21125903 21128229 -176067203 + L1_Mm LINE L1 2016 4343 -1540 2 746 733 129 42 14 chr1 21128229 21128371 -176067061 + RMER19B LTR ERVK 757 902 0 2 746 198 103 0 0 chr1 21128374 21128403 -176067029 + (TTCTCC)n Simple_repeat Simple_repeat 2 30 0 2 746 248 326 10 20 chr1 21128659 21128759 -176066673 - L1_Rod LINE L1 -108 5739 5641 2 746 393 219 0 0 chr1 21128895 21128977 -176066455 - PB1D10 SINE Alu 0 117 36 2 746 651 275 85 0 chr1 21128972 21129172 -176066260 + B4A SINE B4 56 272 -20 2 746 204 240 20 20 chr1 21129201 21129252 -176066180 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 746 354 264 212 11 chr1 21129253 21129520 -176065912 + L1ME3 LINE L1 5335 5671 -508 2 746 510 17 0 0 chr1 21129774 21129833 -176065599 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 746 389 343 37 5 chr1 21129860 21130077 -176065355 + L1ME3 LINE L1 5724 5947 -215 2 746 545 129 11 0 chr1 21130186 21130279 -176065153 + (CAA)n Simple_repeat Simple_repeat 3 96 0 2 746 762 169 22 0 chr1 21130318 21130454 -176064978 - B3A SINE B2 -55 143 5 2 746 2468 97 90 13 chr1 21130651 21131027 -176064405 + MTB_Mm LTR MaLR 3 407 0 2 746 2587 28 0 0 chr1 21131624 21131947 -176063485 - IAPEY2_LTR LTR ERVK -3 354 32 2 746 303 143 143 0 chr1 21132013 21132076 -176063356 + MTD LTR MaLR 4 75 -344 2 746 2161 103 9 130 chr1 21132091 21132528 -176062904 + ORR1B1 LTR MaLR 3 386 -8 2 746 1354 211 86 6 chr1 21132526 21132850 -176062582 + MTD LTR MaLR 70 419 0 2 746 1101 196 4 9 chr1 21133019 21133245 -176062187 - URR1B DNA MER1_type 0 225 1 2 746 282 309 38 38 chr1 21133454 21133585 -176061847 + MLT1A1 LTR MaLR 269 399 -9 2 746 187 364 23 0 chr1 21133604 21133692 -176061740 - MIRc SINE MIR -139 129 40 2 746 1044 260 60 26 chr1 21134120 21134468 -176060964 + L1MA9 LINE L1 5953 6312 0 2 746 735 98 0 0 chr1 21134637 21134760 -176060672 + (TC)n Simple_repeat Simple_repeat 2 124 0 2 746 405 0 0 0 chr1 21134760 21134804 -176060628 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 746 315 0 0 0 chr1 21135076 21135111 -176060321 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 746 522 0 0 0 chr1 21135147 21135205 -176060227 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 746 22 0 0 0 chr1 21137587 21137609 -176057823 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 573 285 15 0 chr1 21137720 21137857 -176057575 - B1_Mur1 SINE Alu -9 140 2 2 746 25 51 0 0 chr1 21137868 21137907 -176057525 + AT_rich Low_complexity Low_complexity 1 39 0 2 746 1726 260 75 12 chr1 21137914 21138424 -176057008 - Lx8 LINE L1 -178 7295 6754 2 746 560 325 94 43 chr1 21138455 21138696 -176056736 - Lx8 LINE L1 -1456 6017 5763 2 746 324 0 0 0 chr1 21138696 21138732 -176056700 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 746 420 20 0 0 chr1 21138732 21138780 -176056652 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 746 560 317 109 28 chr1 21138780 21139084 -176056348 - Lx8 LINE L1 -507 5796 5474 2 746 2042 249 171 17 chr1 21139063 21139716 -176055716 - Lx6 LINE L1 0 7460 6716 2 746 1946 162 182 24 chr1 21139715 21139993 -176055439 + L1_Mur2 LINE L1 1068 1383 -4494 2 746 3257 126 65 20 chr1 21139993 21140342 -176055090 + RMER2 LTR ERV1 1 375 -192 2 746 411 21 0 0 chr1 21140342 21140390 -176055042 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 746 3257 126 65 20 chr1 21140390 21140582 -176054850 + RMER2 LTR ERV1 376 566 -1 2 746 1946 165 60 17 chr1 21140582 21140873 -176054559 + L1_Mur2 LINE L1 1384 1695 -4182 2 746 834 123 0 0 chr1 21140874 21141004 -176054428 + (GA)n Simple_repeat Simple_repeat 2 131 0 2 746 507 288 103 34 chr1 21141020 21141311 -176054121 - L1M2 LINE L1 -511 5780 5470 2 746 630 71 0 0 chr1 21141389 21141473 -176053959 + (GA)n Simple_repeat Simple_repeat 2 85 0 2 746 360 200 194 31 chr1 21141478 21141576 -176053856 + L1_Mur2 LINE L1 1698 1811 -4066 2 746 1950 178 72 10 chr1 21141570 21141984 -176053448 + L1_Mur2 LINE L1 1963 2402 -3475 2 746 544 264 49 0 chr1 21142020 21142164 -176053268 + Lx5 LINE L1 5180 5330 -547 2 746 1278 199 67 48 chr1 21142170 21142544 -176052888 + Lx5 LINE L1 5814 6194 -856 2 746 727 225 110 81 chr1 21142546 21142655 -176052777 - RLTR15 LTR ERVK -40 319 211 2 746 213 65 0 0 chr1 21142655 21142686 -176052746 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 746 261 0 0 0 chr1 21142692 21142721 -176052711 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 746 1161 36 0 0 chr1 21142721 21142858 -176052574 - B1_Mus2 SINE Alu -10 137 1 2 746 727 225 110 81 chr1 21142858 21143050 -176052382 - RLTR15 LTR ERVK -149 210 2 2 746 326 247 35 0 chr1 21143707 21143792 -176051640 + PB1D10 SINE Alu 3 90 -27 2 746 291 191 0 0 chr1 21143804 21143867 -176051565 + C-rich Low_complexity Low_complexity 2 64 0 2 746 245 51 26 0 chr1 21144148 21144187 -176051245 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 2 746 543 43 0 0 chr1 21144298 21144368 -176051064 + (CCAA)n Simple_repeat Simple_repeat 4 73 0 2 746 423 211 65 28 chr1 21145500 21145607 -176049825 + B3 SINE B2 94 204 -12 2 746 405 245 0 0 chr1 21146027 21146166 -176049266 + CT-rich Low_complexity Low_complexity 2 140 0 2 746 931 86 7 0 chr1 21146191 21146331 -176049101 + B1_Mus1 SINE Alu 8 148 0 2 746 323 60 20 0 chr1 21146340 21146390 -176049042 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 746 216 0 0 0 chr1 21146396 21146420 -176049012 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 2 746 569 257 150 40 chr1 21146687 21146914 -176048518 - Lx8 LINE L1 -253 7220 6969 2 746 972 298 132 9 chr1 21146913 21147445 -176047987 - L1M3 LINE L1 -1488 4652 4056 2 746 266 268 139 26 chr1 21147537 21147652 -176047780 + MER5B DNA MER1_type 50 177 -1 2 746 222 293 107 0 chr1 21147842 21147917 -176047515 - B3A SINE B2 -25 173 91 2 746 867 106 0 19 chr1 21148250 21148404 -176047028 + (TTCC)n Simple_repeat Simple_repeat 2 152 0 3 746 441 0 0 0 chr1 21148404 21148453 -176046979 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 746 422 137 0 128 chr1 21148453 21148562 -176046870 - B3A SINE B2 -103 95 1 3 746 290 45 23 0 chr1 21148886 21148930 -176046502 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 3 746 477 299 25 25 chr1 21149376 21149537 -176045895 - RSINE1 SINE B4 -3 162 2 3 746 2798 191 76 96 chr1 21150244 21151071 -176044361 + RLTR40 LTR ERVK 1 811 -6 3 746 254 354 146 0 chr1 21151598 21151742 -176043690 + MIR SINE MIR 82 246 -16 3 746 1525 143 88 3 chr1 21153196 21153534 -176041898 + MTC LTR MaLR 3 370 -49 3 746 447 239 93 53 chr1 21153910 21154135 -176041297 - RMER15 LTR ERVL -43 532 273 3 746 1238 185 5 5 chr1 21154280 21154503 -176040929 - URR1A DNA MER1_type -3 223 1 3 746 621 296 120 37 chr1 21154572 21155005 -176040427 - L1M2 LINE L1 -3578 3264 2791 3 746 819 82 0 71 chr1 21155006 21155176 -176040256 + CT-rich Low_complexity Low_complexity 5 162 0 3 746 236 316 0 0 chr1 21155293 21155369 -176040063 - L1M2 LINE L1 -4224 2625 2550 3 746 333 102 0 0 chr1 21155897 21155956 -176039476 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 3 746 30292 87 8 52 chr1 21157605 21161149 -176034283 - L1_Mus2 LINE L1 0 6566 3164 3 746 207 0 0 0 chr1 21161149 21161172 -176034260 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 746 1252 38 0 0 chr1 21161172 21161331 -176034101 - B2_Mm1a SINE B2 -33 160 2 3 746 30292 151 24 87 chr1 21161331 21164344 -176031088 - L1_Mus2 LINE L1 -2720 3163 231 3 746 1269 56 0 0 chr1 21164415 21164577 -176030855 + (TCTCCC)n Simple_repeat Simple_repeat 6 167 0 3 746 631 191 64 3 chr1 21164577 21164703 -176030729 - B1_Mur4 SINE Alu -12 138 2 3 746 198 0 0 0 chr1 21165601 21165623 -176029809 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 746 299 130 19 0 chr1 21165857 21165911 -176029521 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 746 200 213 32 32 chr1 21165924 21165987 -176029445 + (TATG)n Simple_repeat Simple_repeat 2 64 0 3 746 413 81 16 0 chr1 21165987 21166049 -176029383 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 746 333 118 0 0 chr1 21166068 21166119 -176029313 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 746 456 19 0 0 chr1 21168619 21168672 -176026760 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 3 746 236 149 0 21 chr1 21169531 21169579 -176025853 + GA-rich Low_complexity Low_complexity 2 48 0 3 746 583 298 33 16 chr1 21169831 21170015 -176025417 + B3 SINE B2 25 211 -5 3 746 3457 28 5 0 chr1 21170036 21170430 -176025002 + MTA_Mm LTR MaLR 1 396 0 3 746 493 271 32 8 chr1 21171251 21171424 -176024008 + L1MB8 LINE L1 5842 6016 -163 3 746 3062 58 2 12 chr1 21171447 21171846 -176023586 + L1Md_F2 LINE L1 6184 6578 -4 3 746 623 278 24 34 chr1 21172841 21173046 -176022386 - MLT1A0 LTR MaLR -12 353 151 3 746 681 219 22 94 chr1 21173068 21173249 -176022183 + ID_B1 SINE B4 1 168 -56 3 746 313 258 21 63 chr1 21173180 21173275 -176022157 + PB1D10 SINE Alu 17 107 -10 3 746 604 80 35 9 chr1 21173279 21173393 -176022039 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 3 746 537 326 0 0 chr1 21174411 21174555 -176020877 + RSINE1 SINE B4 4 147 -18 3 746 213 94 0 0 chr1 21174556 21174588 -176020844 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 746 480 289 59 159 chr1 21175055 21175278 -176020154 - B4 SINE B4 -3 289 82 3 746 624 221 191 11 chr1 21175278 21175334 -176020098 - B3 SINE B2 0 216 137 3 746 279 0 0 0 chr1 21175334 21175365 -176020067 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 746 624 221 191 11 chr1 21175365 21175491 -176019941 - B3 SINE B2 -80 136 2 3 746 480 289 59 159 chr1 21175491 21175588 -176019844 - B4 SINE B4 -211 81 1 3 746 2941 121 148 84 chr1 21176400 21176961 -176018471 - MT2B LTR ERVL 0 601 5 3 746 477 0 0 0 chr1 21177736 21177789 -176017643 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 746 528 343 76 16 chr1 21178133 21178515 -176016917 - MLT1C LTR MaLR -1 466 62 3 746 599 214 0 8 chr1 21180420 21180547 -176014885 + ORR1B2 LTR MaLR 242 367 0 3 746 301 278 93 0 chr1 21180775 21180872 -176014560 + L1MB7 LINE L1 6031 6136 -48 3 746 612 257 122 51 chr1 21180879 21181076 -176014356 + B3 SINE B2 2 212 -4 3 746 280 239 84 0 chr1 21181357 21181428 -176014004 - B3 SINE B2 -10 206 130 3 746 273 266 0 0 chr1 21182603 21182667 -176012765 - ORR1E LTR MaLR -262 97 34 3 746 810 214 60 84 chr1 21182890 21183140 -176012292 + RMER10A LTR ERVL 1 244 -198 3 746 223 341 0 0 chr1 21183169 21183251 -176012181 + ID4_ SINE ID 2 83 0 3 746 471 207 83 62 chr1 21183716 21183860 -176011572 + B1_Mur1 SINE Alu 1 147 -2 3 746 340 205 76 59 chr1 21183887 21184006 -176011426 + MER65-int LTR ERV1 1905 2025 -2846 3 746 386 292 71 11 chr1 21184126 21184334 -176011098 + L1_Mur2 LINE L1 5606 5800 -384 3 746 364 239 17 58 chr1 21184995 21185115 -176010317 + B3A SINE B2 1 115 -83 3 746 38743 34 1 0 chr1 21185427 21192293 -176003139 - L1Md_T LINE L1 0 6585 1 3 746 1473 187 31 12 chr1 21193187 21193512 -176001920 - RLTR11A LTR ERVK 0 528 198 3 746 528 273 14 14 chr1 21193630 21193775 -176001657 + B1_Mur4 SINE Alu 1 145 -5 3 746 210 118 0 0 chr1 21193781 21193815 -176001617 + (A)n Simple_repeat Simple_repeat 1 34 0 3 746 443 281 100 49 chr1 21193923 21194252 -176001180 + L1M2 LINE L1 2348 2693 -3450 3 746 694 208 21 0 chr1 21194336 21194480 -176000952 + B1_Mur3 SINE Alu 2 148 -1 3 746 21 0 0 0 chr1 21194490 21194511 -176000921 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 225 0 0 0 chr1 21195176 21195201 -176000231 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 746 219 69 0 0 chr1 21195201 21195229 -176000203 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 746 244 324 0 14 chr1 21195249 21195318 -176000114 - ID4_ SINE ID -14 69 2 3 746 1124 233 28 121 chr1 21196400 21196796 -175998636 - RLTR19-int LTR ERVK -1756 4381 4023 3 746 2598 125 50 15 chr1 21196842 21197306 -175998126 + RMER19B LTR ERVK 416 895 -7 3 746 423 0 0 0 chr1 21197567 21197614 -175997818 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 746 215 61 30 0 chr1 21199821 21199854 -175995578 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 746 499 280 0 8 chr1 21199865 21199998 -175995434 - B1_Mur2 SINE Alu -16 133 2 3 746 279 0 0 0 chr1 21201174 21201205 -175994227 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 746 1009 114 0 2 chr1 21201336 21201482 -175993950 - Lx4A LINE L1 -222 6836 6690 3 746 1091 93 6 0 chr1 21201544 21201706 -175993726 + (TC)n Simple_repeat Simple_repeat 2 164 0 3 746 213 293 61 26 chr1 21202277 21202410 -175993022 - MIRc SINE MIR -102 166 30 3 746 1688 215 57 32 chr1 21202530 21202968 -175992464 + RLTR20A LTR ERVK 1 449 -92 3 746 4812 48 9 0 chr1 21203000 21203582 -175991850 + LTRIS_Mus LTR ERV1 1 587 0 3 746 942 259 77 16 chr1 21204491 21204801 -175990631 + MTE-int LTR MaLR 1086 1414 -166 3 746 291 342 33 0 chr1 21204895 21205015 -175990417 - MER5A DNA MER1_type -65 124 1 3 746 396 0 0 0 chr1 21205314 21205358 -175990074 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 746 718 210 14 0 chr1 21205637 21205780 -175989652 - B1_Mur4 SINE Alu 0 150 6 3 746 230 305 0 99 chr1 21205938 21205964 -175989468 + MT2B LTR ERVL 143 155 -446 3 746 594 263 7 7 chr1 21205964 21206102 -175989330 + B1F SINE Alu 3 140 -9 3 746 1494 189 97 23 chr1 21206817 21207159 -175988273 - ORR1B2 LTR MaLR 0 367 1 3 746 182 83 56 0 chr1 21207771 21207807 -175987625 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 3 746 343 0 43 0 chr1 21208015 21208062 -175987370 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 746 270 0 0 0 chr1 21210237 21210267 -175985165 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 746 719 86 0 9 chr1 21210717 21210823 -175984609 - B1_Mus2 SINE Alu -1 146 42 3 746 282 181 13 53 chr1 21210765 21210841 -175984591 - RLTR25B LTR ERVK -529 499 427 3 746 389 57 0 0 chr1 21210886 21210939 -175984493 - B1_Mus1 SINE Alu -93 55 3 3 746 460 338 0 0 chr1 21210943 21211091 -175984341 - B3A SINE B2 -1 197 50 3 746 194 219 0 0 chr1 21211406 21211447 -175983985 + L2b LINE L2 3328 3368 -7 3 746 340 305 117 23 chr1 21211666 21211837 -175983595 - MIR SINE MIR -3 259 73 3 746 212 350 21 28 chr1 21212114 21212255 -175983177 + MIR SINE MIR 78 217 -45 3 746 216 229 0 0 chr1 21212409 21212457 -175982975 - B1F1 SINE Alu -18 131 84 3 746 798 244 29 14 chr1 21212633 21212841 -175982591 - B3 SINE B2 0 216 6 3 746 243 146 0 0 chr1 21212842 21212883 -175982549 + (CAT)n Simple_repeat Simple_repeat 3 43 0 3 746 234 0 0 0 chr1 21213001 21213027 -175982405 + (CCA)n Simple_repeat Simple_repeat 2 27 0 3 746 343 227 139 40 chr1 21213055 21213156 -175982276 - B1F SINE Alu -38 111 1 3 746 305 207 30 13 chr1 21213262 21213337 -175982095 + ID4_ SINE ID 2 77 -6 3 746 543 236 101 62 chr1 21213339 21213646 -175981786 + RLTR15 LTR ERVK 1 319 -40 3 746 1302 293 96 52 chr1 21213794 21214542 -175980890 + Lx8 LINE L1 6691 7471 -2 3 746 27 29 0 0 chr1 21214544 21214578 -175980854 + AT_rich Low_complexity Low_complexity 1 34 0 3 746 1241 181 9 5 chr1 21214679 21214901 -175980531 - URR1B DNA MER1_type -1 224 2 3 746 186 103 0 0 chr1 21215429 21215458 -175979974 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 3 746 287 191 15 0 chr1 21215741 21215809 -175979623 + CT-rich Low_complexity Low_complexity 4 72 0 4 746 257 70 0 44 chr1 21215962 21216007 -175979425 + (CCCCCT)n Simple_repeat Simple_repeat 6 48 0 4 746 488 181 281 29 chr1 21216886 21217057 -175978375 + B3 SINE B2 1 214 -2 4 746 545 309 10 21 chr1 21217082 21217274 -175978158 + B3A SINE B2 4 193 -5 4 746 1728 107 70 48 chr1 21217630 21217945 -175977487 - ORR1A2 LTR MaLR 0 327 6 4 746 895 283 54 68 chr1 21217950 21218303 -175977129 - ORR1E LTR MaLR 0 359 12 4 746 462 208 0 0 chr1 21218337 21218414 -175977018 - ID4_ SINE ID -5 78 2 4 746 318 26 0 0 chr1 21219140 21219179 -175976253 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 746 624 251 11 39 chr1 21219180 21219358 -175976074 - B3A SINE B2 -25 173 1 4 746 480 77 0 0 chr1 21221108 21221173 -175974259 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 746 366 42 0 0 chr1 21221242 21221290 -175974142 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 746 483 308 108 14 chr1 21221317 21221465 -175973967 + RSINE1 SINE B4 3 164 -1 4 746 256 326 11 0 chr1 21221842 21221937 -175973495 + Lx8 LINE L1 7071 7166 -307 4 746 527 218 247 0 chr1 21222566 21222736 -175972696 + B3 SINE B2 3 214 -2 4 746 21 36 0 0 chr1 21223228 21223256 -175972176 + AT_rich Low_complexity Low_complexity 1 28 0 4 746 432 167 0 0 chr1 21223307 21223379 -175972053 - B1_Mur2 SINE Alu 0 149 78 4 746 311 241 0 46 chr1 21223379 21223394 -175972038 - ID_B1 SINE B4 0 224 142 4 746 687 271 34 10 chr1 21224196 21224405 -175971027 - B3 SINE B2 -1 215 2 4 746 583 237 63 29 chr1 21224481 21224655 -175970777 - B3A SINE B2 -18 180 1 4 746 288 0 0 0 chr1 21224822 21224854 -175970578 + (A)n Simple_repeat Simple_repeat 1 32 0 4 746 1440 60 5 21 chr1 21226272 21226459 -175968973 - B2_Mm1a SINE B2 -8 185 2 4 746 640 235 57 1 chr1 21226516 21226706 -175968726 + L1MB7 LINE L1 5774 5975 -189 4 746 275 208 70 78 chr1 21226732 21226847 -175968585 + L1MB7 LINE L1 6049 6162 -12 4 746 228 67 0 0 chr1 21228160 21228190 -175967242 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 4 746 241 257 18 35 chr1 21228228 21228341 -175967091 + GA-rich Low_complexity Low_complexity 2 112 0 4 746 254 289 66 66 chr1 21228547 21228714 -175966718 + RLTR25A LTR ERVK 937 1103 0 4 746 992 208 30 5 chr1 21228918 21229116 -175966316 + B3 SINE B2 5 207 -9 4 746 241 277 39 29 chr1 21229252 21229356 -175966076 - MLT1D LTR MaLR -379 126 22 4 746 245 271 52 0 chr1 21229700 21229796 -175965636 - MER53 DNA hAT -10 183 83 4 746 246 250 0 0 chr1 21229900 21229952 -175965480 - RLTR33 LTR ERVK -85 593 542 4 746 432 122 0 0 chr1 21230757 21230839 -175964593 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 746 833 255 128 14 chr1 21231286 21231568 -175963864 - RMER21B LTR ERV1 -275 567 254 4 746 483 245 0 0 chr1 21231623 21231717 -175963715 - RMER4B LTR ERVK -147 438 345 4 746 628 146 9 18 chr1 21231717 21231829 -175963603 - RodERV21-int LTR ERV1 -172 4819 4709 4 746 1236 185 187 7 chr1 21231820 21232109 -175963323 - RodERV21-int LTR ERV1 -894 4097 3757 4 746 334 312 0 0 chr1 21232138 21232231 -175963201 - RodERV21-int LTR ERV1 -1548 3443 3351 4 747 251 228 60 60 chr1 21233930 21234014 -175961418 - RLTR42-int LTR ERVK -4332 1190 1107 4 747 546 29 0 0 chr1 21234105 21234173 -175961259 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 747 1824 196 70 41 chr1 21234197 21234638 -175960794 - RodERV21-int LTR ERV1 -4011 980 527 4 747 1995 238 21 11 chr1 21234684 21235118 -175960314 - RodERV21-int LTR ERV1 -4553 438 1 4 747 767 243 87 12 chr1 21235317 21235559 -175959873 - RMER21B LTR ERV1 -334 508 249 4 747 695 12 12 0 chr1 21235992 21236076 -175959356 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 4 747 21 0 0 0 chr1 21237201 21237222 -175958210 + AT_rich Low_complexity Low_complexity 1 21 0 4 747 1776 118 10 181 chr1 21237233 21237516 -175957916 - ORR1A3 LTR MaLR 0 326 99 4 747 1122 75 0 27 chr1 21237516 21237666 -175957766 - B1_Mm SINE Alu 0 147 2 4 747 1776 118 10 181 chr1 21237666 21237775 -175957657 - ORR1A3 LTR MaLR -228 98 1 4 747 297 239 0 0 chr1 21239393 21239464 -175955968 + ID4 SINE ID 2 72 -11 4 747 377 205 0 0 chr1 21240119 21240197 -175955235 + B3 SINE B2 2 79 -137 4 747 653 170 7 0 chr1 21240197 21240338 -175955094 + (CA)n Simple_repeat Simple_repeat 1 142 0 4 747 847 195 5 43 chr1 21241494 21241703 -175953729 - RMER5 LTR ERV1 0 534 334 4 747 222 37 0 0 chr1 21241756 21241783 -175953649 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4 747 453 167 12 12 chr1 21241789 21241874 -175953558 - RMER5 LTR ERV1 -353 181 97 4 747 305 212 93 75 chr1 21242183 21242290 -175953142 - RMER5 LTR ERV1 -425 109 1 4 747 2070 140 109 76 chr1 21243758 21244190 -175951242 - RLTR41 LTR ERV1 0 446 1 4 747 1257 255 58 43 chr1 21244213 21244730 -175950702 - MYSERV-int LTR ERVK -492 6058 5597 4 747 228 176 0 139 chr1 21244737 21244816 -175950616 - ID_B1 SINE B4 0 224 157 4 747 410 152 66 0 chr1 21244745 21244843 -175950589 - B1_Mus2 SINE Alu 0 147 1 4 747 222 283 0 0 chr1 21245414 21245474 -175949958 + (CATA)n Simple_repeat Simple_repeat 4 63 0 4 747 1068 212 45 143 chr1 21246352 21246792 -175948640 - RMER10B LTR ERVL 0 398 2 4 747 1475 235 68 19 chr1 21246843 21247268 -175948164 - RLTR41 LTR ERV1 0 446 1 4 747 1338 219 90 39 chr1 21247586 21248075 -175947357 - RLTR11A2 LTR ERVK -13 514 1 4 747 403 306 57 1 chr1 21249602 21249790 -175945642 + L1M4 LINE L1 5566 5764 -416 4 747 395 261 148 0 chr1 21249842 21249957 -175945475 + B1_Mur3 SINE Alu 3 134 -15 4 747 1192 35 7 7 chr1 21250329 21250474 -175944958 + B1_Mus2 SINE Alu 3 147 0 4 747 567 307 18 40 chr1 21250559 21250837 -175944595 - MLT1A0 LTR MaLR -93 272 1 4 747 422 288 87 16 chr1 21252056 21252183 -175943249 + ID_B1 SINE B4 82 217 -7 4 747 189 147 0 0 chr1 21252183 21252217 -175943215 + (CATG)n Simple_repeat Simple_repeat 2 35 0 4 747 801 244 49 19 chr1 21253491 21253581 -175941851 - RLTR20C LTR ERVK -2 532 444 4 747 288 0 0 0 chr1 21253581 21253613 -175941819 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 747 801 244 49 19 chr1 21253613 21253727 -175941705 - RLTR20C LTR ERVK -91 443 322 4 747 499 253 21 21 chr1 21253728 21254001 -175941431 + RLTR20C LTR ERVK 179 522 -12 4 747 225 65 0 0 chr1 21254073 21254104 -175941328 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 747 693 290 85 23 chr1 21254145 21254196 -175941236 - B4A SINE B4 -17 275 225 4 747 276 30 0 0 chr1 21254196 21254229 -175941203 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 4 747 693 290 85 23 chr1 21254229 21254435 -175940997 - B4A SINE B4 -68 224 4 4 747 247 280 93 0 chr1 21254459 21254534 -175940898 - ID4 SINE ID -1 82 1 4 747 390 338 113 9 chr1 21255672 21255902 -175939530 - MLT1C LTR MaLR -9 458 205 4 747 2511 148 31 39 chr1 21256077 21256591 -175938841 - RLTR11A2 LTR ERVK 0 527 18 4 747 1351 85 5 16 chr1 21256956 21257148 -175938284 - B2_Mm2 SINE B2 -3 192 3 4 747 185 59 59 0 chr1 21257282 21257316 -175938116 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 4 747 313 232 0 28 chr1 21257426 21257497 -175937935 + B1_Mur1 SINE Alu 64 132 -17 4 747 194 361 29 22 chr1 21257622 21257758 -175937674 - MIR SINE MIR -45 217 81 4 747 307 315 111 18 chr1 21258040 21258211 -175937221 + MIR SINE MIR 73 259 -3 4 747 359 137 0 0 chr1 21258213 21258264 -175937168 + L1MA5 LINE L1 5888 5938 -362 4 747 728 306 32 7 chr1 21258290 21258573 -175936859 + L1MA5 LINE L1 6010 6299 -1 4 747 181 244 0 0 chr1 21258717 21258758 -175936674 - L2b LINE L2 -7 3368 3328 4 747 487 331 0 0 chr1 21259073 21259221 -175936211 + B3A SINE B2 50 197 -1 4 747 404 51 0 33 chr1 21259224 21259285 -175936147 + B1_Mus1 SINE Alu 2 60 -88 4 747 822 183 0 43 chr1 21259287 21259542 -175935890 + (CAGAGA)n Simple_repeat Simple_repeat 1 244 0 4 747 243 196 85 38 chr1 21259542 21259648 -175935784 + RLTR25B LTR ERVK 398 508 -520 4 747 695 64 0 0 chr1 21259581 21259675 -175935757 + B1_Mus2 SINE Alu 42 135 -12 4 747 192 77 0 0 chr1 21259676 21259702 -175935730 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 747 414 0 0 0 chr1 21260145 21260191 -175935241 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 747 243 0 0 0 chr1 21261785 21261812 -175933620 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 4 747 22 0 0 0 chr1 21263884 21263906 -175931526 + AT_rich Low_complexity Low_complexity 1 22 0 4 747 602 233 8 8 chr1 21264303 21264433 -175930999 - B1F SINE Alu -7 142 13 4 747 320 333 33 0 chr1 21265167 21265287 -175930145 + MER5A DNA MER1_type 1 124 -65 4 747 957 256 77 19 chr1 21265381 21265692 -175929740 - MTE-int LTR MaLR -166 1414 1086 4 747 4942 43 3 0 chr1 21266640 21267225 -175928207 - LTRIS_Mus LTR ERV1 0 587 1 4 747 1622 221 55 30 chr1 21267257 21267695 -175927737 - RLTR20A LTR ERVK -92 449 1 4 747 207 0 0 0 chr1 21267896 21267919 -175927513 + (T)n Simple_repeat Simple_repeat 1 23 0 4 747 1215 49 0 0 chr1 21267921 21268065 -175927367 - B1_Mus2 SINE Alu -3 144 1 4 747 317 41 61 0 chr1 21268696 21268745 -175926687 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 4 747 980 109 0 0 chr1 21268814 21268952 -175926480 + Lx4A LINE L1 6699 6836 -222 4 747 207 0 0 0 chr1 21269096 21269119 -175926313 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 747 438 271 49 21 chr1 21269869 21270012 -175925420 + B1_Mur2 SINE Alu 2 148 -1 4 747 719 208 21 0 chr1 21270820 21270964 -175924468 - B1_Mur1 SINE Alu -1 148 2 4 747 414 292 83 31 chr1 21271049 21271374 -175924058 - L1M2 LINE L1 -3450 2693 2352 4 747 600 232 21 14 chr1 21271519 21271663 -175923769 - B1_Mur4 SINE Alu -5 145 1 4 747 1462 172 37 19 chr1 21271781 21272106 -175923326 + RLTR11A LTR ERVK 198 528 0 4 747 357 248 17 58 chr1 21273296 21273416 -175922016 - B3A SINE B2 -83 115 1 4 747 192 40 0 0 chr1 21275083 21275108 -175920324 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 747 395 279 0 0 chr1 21275141 21275227 -175920205 + RSINE1 SINE B4 9 94 -71 5 747 225 0 0 0 chr1 21275271 21275296 -175920136 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 747 494 301 45 6 chr1 21275916 21276073 -175919359 + B3A SINE B2 4 166 -32 5 747 422 238 0 6 chr1 21276073 21276234 -175919198 + (TG)n Simple_repeat Simple_repeat 1 160 0 5 747 1280 65 53 0 chr1 21277132 21277302 -175918130 + L1_Mus1 LINE L1 6389 6567 0 5 747 22 0 0 0 chr1 21277353 21277375 -175918057 + AT_rich Low_complexity Low_complexity 1 22 0 5 747 261 83 0 0 chr1 21277388 21277424 -175918008 + (A)n Simple_repeat Simple_repeat 1 36 0 5 747 355 273 11 0 chr1 21277431 21277519 -175917913 - PB1D10 SINE Alu -18 99 11 5 747 2593 85 0 9 chr1 21277663 21278008 -175917424 - L1_Mus1 LINE L1 -2 6565 6224 5 747 180 329 153 28 chr1 21278881 21279025 -175916407 + MIRb SINE MIR 49 210 -58 5 747 486 49 0 0 chr1 21279241 21279302 -175916130 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 747 2641 154 60 43 chr1 21280212 21280728 -175914704 - RLTR11A LTR ERVK 0 528 4 5 747 275 275 0 14 chr1 21280776 21280846 -175914586 + B4A SINE B4 189 257 -35 5 747 396 0 0 0 chr1 21280894 21280938 -175914494 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 747 476 219 10 30 chr1 21280957 21281167 -175914265 + GA-rich Low_complexity Low_complexity 1 205 0 5 747 555 16 0 0 chr1 21281274 21281338 -175914094 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 747 249 272 138 21 chr1 21281715 21281809 -175913623 + PB1D10 SINE Alu 1 105 -12 5 747 641 103 263 17 chr1 21282419 21282537 -175912895 - B1_Mus2 SINE Alu 0 147 1 5 747 1625 99 49 15 chr1 21282827 21283093 -175912339 + ORR1A2 LTR MaLR 9 283 -44 5 747 195 204 0 0 chr1 21284365 21284419 -175911013 + CT-rich Low_complexity Low_complexity 1 54 0 5 747 370 339 58 0 chr1 21284580 21284701 -175910731 + ID_B1 SINE B4 82 209 -15 5 747 339 25 0 0 chr1 21284712 21284752 -175910680 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 747 278 281 41 168 chr1 21285736 21285917 -175909515 + Lx7 LINE L1 5621 5777 -1919 5 747 1984 107 41 22 chr1 21285917 21286234 -175909198 + L1_Mus4 LINE L1 6313 6635 -1 5 747 250 281 41 168 chr1 21286234 21286249 -175909183 + Lx7 LINE L1 5778 5792 -1904 5 747 370 159 11 11 chr1 21286334 21286423 -175909009 + GA-rich Low_complexity Low_complexity 2 90 0 5 747 479 300 78 49 chr1 21286562 21286846 -175908586 + Lx8 LINE L1 7137 7428 -45 5 747 270 0 0 0 chr1 21286960 21286990 -175908442 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 747 229 48 23 45 chr1 21287115 21287159 -175908273 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 5 747 447 320 7 32 chr1 21287160 21287315 -175908117 - ID_B1 SINE B4 -4 220 70 5 747 370 300 93 0 chr1 21287339 21287489 -175907943 + RSINE1 SINE B4 2 165 0 5 747 24 0 0 0 chr1 21287489 21287513 -175907919 + AT_rich Low_complexity Low_complexity 1 24 0 5 747 351 0 0 0 chr1 21287514 21287553 -175907879 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 747 1000 95 0 7 chr1 21287570 21287718 -175907714 - B1_Mus1 SINE Alu 0 148 2 5 747 190 160 0 39 chr1 21287816 21287868 -175907564 + CT-rich Low_complexity Low_complexity 4 53 0 5 747 347 114 0 28 chr1 21288222 21288294 -175907138 + (CAGAGA)n Simple_repeat Simple_repeat 5 74 0 5 747 218 190 16 49 chr1 21288405 21288466 -175906966 + GA-rich Low_complexity Low_complexity 3 61 0 5 747 1203 55 0 0 chr1 21288569 21288714 -175906718 + B1_Mus2 SINE Alu 1 145 -2 5 747 314 100 0 16 chr1 21288714 21288775 -175906657 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 5 747 198 0 0 0 chr1 21289666 21289688 -175905744 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 747 903 124 0 0 chr1 21289688 21289864 -175905568 + (GA)n Simple_repeat Simple_repeat 1 177 0 5 747 445 260 0 0 chr1 21291051 21291151 -175904281 - B3 SINE B2 -58 158 59 5 747 828 171 0 0 chr1 21291242 21291382 -175904050 - B1_Mur3 SINE Alu 0 149 10 5 747 3450 38 2 0 chr1 21292518 21292913 -175902519 - MTA_Mm LTR MaLR 0 396 1 5 747 629 250 45 28 chr1 21293040 21293217 -175902215 + B3A SINE B2 1 180 -18 5 747 843 282 0 10 chr1 21293281 21293485 -175901947 + B3 SINE B2 15 216 0 5 747 1205 41 14 0 chr1 21293571 21293716 -175901716 + B1_Mm SINE Alu 1 147 0 5 747 604 165 204 117 chr1 21294452 21294658 -175900774 + URR1A DNA MER1_type 3 226 0 5 747 602 223 189 0 chr1 21295134 21295309 -175900123 - B3 SINE B2 -6 210 3 5 747 198 91 0 0 chr1 21295347 21295380 -175900052 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 747 1199 48 0 7 chr1 21295383 21295530 -175899902 - B1_Mus2 SINE Alu 0 147 2 5 747 1109 119 11 5 chr1 21295952 21296137 -175899295 + Lx2 LINE L1 6812 6997 0 5 747 325 342 79 79 chr1 21296147 21296538 -175898894 - Lx8 LINE L1 -12 7461 7071 5 747 1151 88 0 0 chr1 21296968 21297127 -175898305 + B2_Mm2 SINE B2 2 160 -35 5 747 215 0 0 62 chr1 21297129 21297161 -175898271 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 5 747 620 303 0 0 chr1 21297574 21297719 -175897713 - B1_Mur1 SINE Alu -1 148 4 5 747 349 263 53 0 chr1 21298454 21298549 -175896883 - Lx8 LINE L1 -587 6886 6787 5 747 836 162 0 7 chr1 21298549 21298692 -175896740 + ORR1A2 LTR MaLR 1 142 -185 5 747 239 71 24 0 chr1 21298713 21298755 -175896677 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 747 847 69 67 30 chr1 21298755 21298890 -175896542 - B1_Mm SINE Alu 0 147 8 5 747 1291 106 5 26 chr1 21298890 21299084 -175896348 - B2_Mm1t SINE B2 -3 190 1 5 747 1316 102 5 0 chr1 21299085 21299281 -175896151 + ORR1A2 LTR MaLR 131 327 0 5 747 1819 272 56 28 chr1 21299281 21299887 -175895545 - Lx8 LINE L1 -682 6791 6169 5 747 1097 55 7 27 chr1 21299890 21300039 -175895393 - B1_Mm SINE Alu 0 147 2 5 747 1033 238 78 119 chr1 21300497 21300883 -175894549 - MTE2a LTR MaLR -3 376 7 5 747 1115 235 5 0 chr1 21300888 21301101 -175894331 + B3 SINE B2 3 216 0 5 747 590 153 137 0 chr1 21301233 21301357 -175894075 + B1_Mur2 SINE Alu 9 149 0 5 747 261 289 0 0 chr1 21301391 21301443 -175893989 + B1_Mus2 SINE Alu 2 53 -94 5 747 216 0 0 0 chr1 21301674 21301698 -175893734 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 747 664 171 30 0 chr1 21301698 21301862 -175893570 + GA-rich Low_complexity Low_complexity 2 170 0 5 747 458 245 0 0 chr1 21302094 21302192 -175893240 + B1_Mur2 SINE Alu 47 144 -5 5 747 386 318 34 15 chr1 21303147 21303351 -175892081 + L1_Mur3 LINE L1 2805 3012 -2868 5 747 283 277 0 15 chr1 21303421 21303487 -175891945 - B1F1 SINE Alu -79 70 6 5 747 245 289 75 41 chr1 21303862 21304060 -175891372 - L1M2a LINE L1 -5113 2096 1883 5 747 565 278 112 19 chr1 21304296 21304556 -175890876 - B4A SINE B4 -8 284 1 5 747 1463 64 27 0 chr1 21304775 21304962 -175890470 - B2_Mm1a SINE B2 0 193 2 5 747 387 41 0 0 chr1 21306238 21306287 -175889145 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 747 943 278 156 6 chr1 21306795 21307135 -175888297 + MTD LTR MaLR 1 391 -28 5 747 21 0 0 0 chr1 21307135 21307156 -175888276 + AT_rich Low_complexity Low_complexity 1 21 0 5 747 829 281 20 0 chr1 21307298 21307494 -175887938 - B3 SINE B2 -16 200 1 5 747 369 342 37 31 chr1 21307790 21307953 -175887479 + RSINE1 SINE B4 2 165 0 5 747 566 51 13 0 chr1 21308174 21308252 -175887180 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 747 618 51 0 0 chr1 21308252 21308329 -175887103 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 747 373 258 11 21 chr1 21308588 21308683 -175886749 + PB1D10 SINE Alu 1 94 -23 5 747 1036 245 0 0 chr1 21308708 21308920 -175886512 + B3 SINE B2 1 212 -4 5 747 277 333 0 40 chr1 21309199 21309274 -175886158 - AluF_3 SINE Alu -102 209 138 5 747 507 107 0 0 chr1 21310087 21310162 -175885270 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 747 921 122 0 51 chr1 21310164 21310320 -175885112 - B1_Mus1 SINE Alu 0 148 1 5 747 1048 308 51 64 chr1 21310348 21310623 -175884809 - RMER16-int LTR ERVK -2665 2741 2487 5 747 1222 48 0 0 chr1 21310623 21310769 -175884663 - B1_Mm SINE Alu 0 147 2 5 747 1048 308 51 64 chr1 21310769 21311373 -175884059 - RMER16-int LTR ERVK -2920 2486 1873 5 747 4664 154 74 7 chr1 21311409 21312244 -175883188 + RMER19B LTR ERVK 1 891 -11 5 747 893 327 76 68 chr1 21312255 21314306 -175881126 - RNERVK23-int LTR ERVK -4568 3649 1164 5 747 273 302 58 77 chr1 21314383 21314591 -175880841 - RNERVK23-int LTR ERVK -2099 1215 1012 5 747 349 305 48 41 chr1 21315102 21315249 -175880183 - RNERVK23-int LTR ERVK -5069 337 190 5 747 1113 80 0 30 chr1 21315423 21315590 -175879842 - L1Md_F2 LINE L1 0 6582 6421 5 747 753 57 9 0 chr1 21316188 21316293 -175879139 - B1_Mm SINE Alu 0 147 42 5 747 215 351 0 0 chr1 21316297 21316374 -175879058 + C-rich Low_complexity Low_complexity 1 77 0 5 747 367 121 0 0 chr1 21316378 21316436 -175878996 - B1_Mus2 SINE Alu -89 58 1 5 747 333 179 0 29 chr1 21316436 21316447 -175878985 - B4 SINE B4 -149 143 77 5 747 642 67 19 9 chr1 21316447 21316552 -175878880 - L1_Mus3 LINE L1 -36 6602 6497 5 747 709 129 7 90 chr1 21316550 21316695 -175878737 + L1_Mm LINE L1 4523 4655 -1228 5 747 1001 148 348 4 chr1 21316696 21316926 -175878506 - LTRIS_Mus LTR ERV1 0 587 279 5 747 1001 219 20 3 chr1 21316960 21317208 -175878224 - LTRIS_Mus LTR ERV1 -303 284 73 5 747 1164 68 7 0 chr1 21317208 21317354 -175878078 - B1_Mus2 SINE Alu 0 147 1 5 747 566 245 75 19 chr1 21317354 21317444 -175877988 - LTRIS_Mus LTR ERV1 -354 93 2 5 747 2744 142 18 9 chr1 21317451 21317898 -175877534 + L1_Mm LINE L1 4660 5110 -773 5 747 299 33 63 32 chr1 21317898 21317912 -175877520 + (CAAA)n Simple_repeat Simple_repeat 4 18 0 5 747 1195 54 0 0 chr1 21317912 21318059 -175877373 + B1_Mus2 SINE Alu 1 147 0 5 747 299 33 63 32 chr1 21318059 21318107 -175877325 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 6 747 753 43 0 0 chr1 21318306 21318399 -175877033 + (GGA)n Simple_repeat Simple_repeat 1 93 0 6 747 899 168 5 38 chr1 21318960 21319146 -175876286 - Lx4A LINE L1 -1 7057 6878 6 747 2168 103 51 13 chr1 21319347 21319662 -175875770 + ORR1A2 LTR MaLR 1 327 0 6 747 870 95 264 7 chr1 21319767 21319915 -175875517 - B2_Mm2 SINE B2 -8 187 2 6 747 761 173 36 7 chr1 21320079 21320219 -175875213 + B1_Mur4 SINE Alu 1 144 -6 6 747 474 287 47 0 chr1 21320249 21320378 -175875054 + RSINE1 SINE B4 3 137 -28 6 747 258 32 0 0 chr1 21320394 21320425 -175875007 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 6 747 319 283 11 11 chr1 21320849 21320942 -175874490 + MurSatRep1 Unknown Unknown 639 731 -1406 6 747 478 326 39 0 chr1 21321005 21321134 -175874298 + RSINE1 SINE B4 12 145 -20 6 747 649 189 63 42 chr1 21321208 21321411 -175874021 + B3 SINE B2 2 195 0 6 747 914 101 0 134 chr1 21321413 21321584 -175873848 + B1_Mus1 SINE Alu 1 148 0 6 747 321 188 0 0 chr1 21321586 21321671 -175873761 + A-rich Low_complexity Low_complexity 1 85 0 6 747 233 114 44 22 chr1 21321671 21321716 -175873716 + GA-rich Low_complexity Low_complexity 1 46 0 6 747 3042 69 34 12 chr1 21321873 21322286 -175873146 - BGLII_Mus LTR ERVK 0 422 1 6 747 720 130 0 17 chr1 21322405 21322522 -175872910 - B1_Mus2 SINE Alu 0 147 33 6 747 265 265 14 14 chr1 21322604 21322673 -175872759 - ID4 SINE ID -13 70 2 6 747 923 207 20 20 chr1 21322834 21323031 -175872401 + B3 SINE B2 1 197 -19 6 747 916 261 147 51 chr1 21323049 21323113 -175872319 - RLTR20B3 LTR ERVK -21 556 483 6 747 333 0 0 0 chr1 21323113 21323150 -175872282 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 747 916 261 147 51 chr1 21323150 21323574 -175871858 - RLTR20B3 LTR ERVK -95 482 23 6 747 1122 88 0 0 chr1 21324073 21324220 -175871212 + B1_Mus2 SINE Alu 1 147 0 6 747 1402 75 21 0 chr1 21324807 21324993 -175870439 - B2_Mm2 SINE B2 -5 190 1 6 747 1649 42 0 0 chr1 21325064 21325256 -175870176 + B2_Mm1a SINE B2 2 193 0 6 747 1144 82 0 0 chr1 21325274 21325420 -175870012 + B1_Mus2 SINE Alu 2 147 0 6 747 210 71 0 0 chr1 21325422 21325450 -175869982 + (A)n Simple_repeat Simple_repeat 1 28 0 6 747 447 19 0 0 chr1 21325885 21325937 -175869495 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 747 306 0 0 0 chr1 21325937 21325970 -175869462 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 747 244 291 64 64 chr1 21326279 21326389 -175869043 - PB1D10 SINE Alu 0 117 8 6 747 410 294 62 7 chr1 21326543 21326687 -175868745 - ID_B1 SINE B4 -71 153 2 6 747 1434 206 40 48 chr1 21326787 21327160 -175868272 - RMER10A LTR ERVL -65 377 8 6 747 456 252 8 47 chr1 21327498 21327627 -175867805 + B1F1 SINE Alu 6 129 -20 6 747 334 261 115 19 chr1 21327627 21327648 -175867784 + B4A SINE B4 115 254 -38 6 747 1479 86 0 9 chr1 21328064 21328276 -175867156 - LTRIS_Mus LTR ERV1 0 587 378 6 747 4286 274 9 58 chr1 21328279 21328751 -175866681 + L1_Mur2 LINE L1 3102 3571 -2572 6 747 1142 101 0 0 chr1 21328751 21328899 -175866533 + B1_Mus1 SINE Alu 1 148 0 6 747 6121 151 9 6 chr1 21328899 21329955 -175865477 + L1_Mur2 LINE L1 3526 4556 -1587 6 747 4793 131 3 12 chr1 21329957 21330692 -175864740 + Lx LINE L1 5921 6648 -6 6 747 1136 155 0 116 chr1 21330696 21330973 -175864459 + RLTR11A LTR ERVK 284 528 0 6 747 349 250 21 127 chr1 21331469 21331611 -175863821 + RLTR11B LTR ERVK 1 127 -326 6 747 259 261 29 0 chr1 21331743 21331812 -175863620 + RLTR11B LTR ERVK 312 382 -71 6 747 330 26 0 0 chr1 21332011 21332050 -175863382 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 6 747 1138 70 6 0 chr1 21332052 21332209 -175863223 - B2_Mm1a SINE B2 -35 158 1 6 747 1091 103 7 0 chr1 21332767 21332913 -175862519 + B1_Mm SINE Alu 1 147 0 6 747 695 225 0 14 chr1 21333443 21333583 -175861849 - B1_Mur1 SINE Alu -7 142 5 6 747 1084 238 40 54 chr1 21333986 21334284 -175861148 + RLTR30 LTR ERV1 4 297 -82 6 747 4110 48 89 2 chr1 21334695 21335214 -175860218 - LTRIS2 LTR ERV1 0 564 1 6 747 1401 160 226 19 chr1 21335390 21335747 -175859685 - RLTR41 LTR ERV1 -15 431 1 6 747 759 52 0 0 chr1 21336065 21336161 -175859271 + (TCCCC)n Simple_repeat Simple_repeat 3 98 0 6 747 433 214 40 10 chr1 21336187 21336286 -175859146 + Lx8 LINE L1 7187 7288 -185 6 747 27 0 0 0 chr1 21336431 21336458 -175858974 + AT_rich Low_complexity Low_complexity 1 27 0 6 747 204 40 0 0 chr1 21336463 21336488 -175858944 + (T)n Simple_repeat Simple_repeat 1 25 0 6 747 1226 48 0 0 chr1 21336488 21336635 -175858797 - B1_Mm SINE Alu 0 147 1 6 747 230 339 23 8 chr1 21337210 21337338 -175858094 + B1_Mur1 SINE Alu 2 131 -18 6 747 581 257 29 0 chr1 21337750 21337886 -175857546 - B1_Mur2 SINE Alu -8 141 2 6 747 1118 148 11 0 chr1 21337918 21338094 -175857338 + B2_Mm1t SINE B2 2 179 -14 6 747 330 127 0 35 chr1 21338168 21338225 -175857207 + B2_Mm2 SINE B2 47 101 -94 6 747 198 0 0 0 chr1 21338243 21338265 -175857167 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 6 747 207 0 0 0 chr1 21338267 21338290 -175857142 + (A)n Simple_repeat Simple_repeat 1 23 0 6 747 198 184 26 13 chr1 21338375 21338452 -175856980 + GA-rich Low_complexity Low_complexity 3 80 0 6 747 783 126 15 0 chr1 21338563 21338697 -175856735 + B1_Mur4 SINE Alu 9 144 -6 6 747 260 321 85 28 chr1 21338697 21338838 -175856594 + B1F1 SINE Alu 1 149 0 6 747 1089 90 0 0 chr1 21338871 21339016 -175856416 - B1_Mus1 SINE Alu -1 147 3 6 747 194 133 26 39 chr1 21339143 21339221 -175856211 + A-rich Low_complexity Low_complexity 3 79 0 6 747 207 0 105 0 chr1 21339399 21339437 -175855995 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 747 329 189 274 0 chr1 21339632 21339738 -175855694 + B1F2 SINE Alu 5 139 -10 6 747 375 229 160 28 chr1 21340562 21340706 -175854726 - B2_Mm2 SINE B2 -5 190 28 6 747 254 333 31 8 chr1 21342354 21342481 -175852951 + B1_Mur1 SINE Alu 2 131 -18 6 747 1077 89 7 14 chr1 21342518 21342666 -175852766 + B1_Mm SINE Alu 1 147 0 6 747 549 259 28 7 chr1 21343077 21343221 -175852211 - B1_Mur2 SINE Alu -1 148 2 6 747 512 0 0 17 chr1 21343250 21343304 -175852128 - L1_Mm LINE L1 -254 5629 5576 6 747 976 32 0 0 chr1 21343304 21343428 -175852004 + L1Md_T LINE L1 6458 6581 -1 6 747 264 213 0 0 chr1 21343569 21343630 -175851802 + GA-rich Low_complexity Low_complexity 3 63 0 6 747 422 149 0 0 chr1 21343736 21343803 -175851629 + B1_Mur3 SINE Alu 1 67 -82 6 747 1145 49 14 0 chr1 21344215 21344359 -175851073 - B1_Mm SINE Alu -1 146 1 6 747 483 184 131 28 chr1 21344708 21344853 -175850579 - B2_Mm2 SINE B2 -8 187 28 6 747 1109 75 7 7 chr1 21346008 21346156 -175849276 + B1_Mus1 SINE Alu 1 148 0 6 747 421 270 0 39 chr1 21346167 21346271 -175849161 - B3 SINE B2 -116 100 1 6 747 638 216 7 0 chr1 21346305 21346444 -175848988 - B1_Mur2 SINE Alu 0 149 10 6 747 247 297 48 19 chr1 21347041 21347144 -175848288 - B1F SINE Alu -41 108 3 6 747 488 273 8 0 chr1 21347724 21347852 -175847580 - B1_Mus1 SINE Alu -6 142 14 6 747 706 201 7 27 chr1 21347887 21348035 -175847397 - B1_Mus1 SINE Alu -1 147 3 6 747 378 203 0 139 chr1 21347922 21348059 -175847373 - MT2B LTR ERVL -337 264 147 6 747 308 130 0 69 chr1 21348733 21348791 -175846641 - PB1D9 SINE Alu -56 64 11 6 747 641 230 21 21 chr1 21348821 21348963 -175846469 - B1_Mur4 SINE Alu -7 143 2 6 747 1022 150 0 0 chr1 21348993 21349140 -175846292 + B1_Mm SINE Alu 1 147 0 6 747 257 151 19 0 chr1 21349151 21349204 -175846228 + (TATG)n Simple_repeat Simple_repeat 1 54 0 6 747 278 222 138 43 chr1 21349777 21349858 -175845574 + PB1D9 SINE Alu 17 108 -12 6 747 1128 89 0 0 chr1 21349858 21350004 -175845428 + B1_Mus1 SINE Alu 2 147 -1 6 747 278 222 138 43 chr1 21350004 21350016 -175845416 + PB1D9 SINE Alu 109 119 -1 6 747 2250 143 23 10 chr1 21350071 21350460 -175844972 + RLTR1D LTR ERV1 59 452 -153 6 747 1892 139 19 29 chr1 21350460 21350772 -175844660 - RLTR27 LTR ERVK 0 309 1 6 747 1650 146 8 0 chr1 21350772 21351026 -175844406 - MMERVK10C-int LTR ERVK 0 7581 7326 6 747 404 315 24 12 chr1 21351148 21351315 -175844117 - MMERVK10C-int LTR ERVK -506 7075 6907 6 747 3447 290 45 49 chr1 21351534 21353367 -175842065 - MMERVK10C-int LTR ERVK -2104 5477 3652 6 747 273 269 0 55 chr1 21353662 21353772 -175841660 + T-rich Low_complexity Low_complexity 2 105 0 6 747 646 254 45 45 chr1 21353776 21353974 -175841458 - RLTR10-int LTR ERVK -1135 852 655 6 747 389 45 7 0 chr1 21354007 21354060 -175841372 - RLTR10-int LTR ERVK -7314 267 163 6 747 1773 152 19 29 chr1 21354085 21354397 -175841035 - RLTR27 LTR ERVK 0 309 1 6 747 1042 96 0 19 chr1 21354397 21354557 -175840875 + RLTR1C LTR ERV1 347 503 0 6 747 365 174 163 0 chr1 21354557 21354641 -175840791 - B2_Mm2 SINE B2 -70 125 28 6 747 262 339 23 8 chr1 21355839 21355967 -175839465 + B1_Mur1 SINE Alu 2 131 -18 6 747 623 210 65 0 chr1 21356399 21356537 -175838895 - B1_Mur2 SINE Alu -1 148 2 6 747 1053 165 11 0 chr1 21356569 21356745 -175838687 + B2_Mm1t SINE B2 2 179 -14 6 747 330 127 0 35 chr1 21356819 21356876 -175838556 + B2_Mm2 SINE B2 47 101 -94 6 747 225 0 0 0 chr1 21356913 21356938 -175838494 + (A)n Simple_repeat Simple_repeat 1 25 0 6 747 198 184 26 13 chr1 21357023 21357100 -175838332 + GA-rich Low_complexity Low_complexity 3 80 0 6 747 756 133 15 0 chr1 21357211 21357345 -175838087 + B1_Mur4 SINE Alu 9 144 -6 6 747 235 328 85 28 chr1 21357345 21357486 -175837946 + B1F1 SINE Alu 1 149 0 7 747 1096 70 14 0 chr1 21357515 21357658 -175837774 - B1_Mus1 SINE Alu -1 147 3 7 747 312 204 20 20 chr1 21357778 21357878 -175837554 + A-rich Low_complexity Low_complexity 5 104 0 7 747 189 0 0 0 chr1 21357978 21357999 -175837433 + (T)n Simple_repeat Simple_repeat 1 21 0 7 747 209 98 24 0 chr1 21358025 21358066 -175837366 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 7 747 326 181 286 0 chr1 21358271 21358376 -175837056 + B1F2 SINE Alu 5 139 -10 7 747 392 207 160 28 chr1 21359196 21359340 -175836092 - B2_Mm2 SINE B2 -5 190 28 7 747 1161 68 0 0 chr1 21360992 21361139 -175834293 - B1_Mm SINE Alu 0 147 1 7 747 283 342 0 8 chr1 21361173 21361294 -175834138 + B1_Mur1 SINE Alu 2 121 -28 7 747 1073 89 7 14 chr1 21361337 21361485 -175833947 + B1_Mm SINE Alu 1 147 0 7 747 551 259 28 7 chr1 21361906 21362050 -175833382 - B1_Mur2 SINE Alu -1 148 2 7 747 246 192 0 0 chr1 21362218 21362270 -175833162 + GA-rich Low_complexity Low_complexity 4 55 0 7 747 389 164 0 0 chr1 21362376 21362443 -175832989 + B1_Mur3 SINE Alu 1 67 -82 7 747 1104 50 35 0 chr1 21362855 21362996 -175832436 - B1_Mm SINE Alu -1 146 1 7 747 521 171 138 35 chr1 21363358 21363503 -175831929 - B2_Mm2 SINE B2 -8 187 28 7 747 25 51 0 0 chr1 21364455 21364494 -175830938 + AT_rich Low_complexity Low_complexity 1 39 0 7 93 1146 68 7 7 chr1 21364664 21364812 -175830620 + B1_Mus1 SINE Alu 1 148 0 7 748 437 270 0 29 chr1 21364823 21364926 -175830506 - B3 SINE B2 -116 100 1 7 748 618 14 0 0 chr1 21364930 21365001 -175830431 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 7 748 589 223 8 0 chr1 21365001 21365131 -175830301 - B1_Mur2 SINE Alu -9 140 10 7 748 239 307 48 19 chr1 21365728 21365831 -175829601 - B1F SINE Alu -41 108 3 7 748 453 284 8 0 chr1 21366411 21366538 -175828894 - B1_Mus1 SINE Alu -7 141 14 7 748 655 214 0 46 chr1 21366569 21366721 -175828711 - B1_Mus1 SINE Alu -1 147 3 7 748 344 220 0 139 chr1 21366608 21366745 -175828687 - MT2B LTR ERVL -337 264 147 7 748 240 309 31 31 chr1 21366803 21366900 -175828532 + PB1D10 SINE Alu 17 113 -4 7 748 257 250 0 56 chr1 21367407 21367420 -175828012 - B4 SINE B4 -129 163 96 7 748 295 146 0 68 chr1 21367420 21367479 -175827953 - PB1D9 SINE Alu -55 65 11 7 748 688 232 0 21 chr1 21367510 21367655 -175827777 - B1_Mur4 SINE Alu -7 143 2 7 748 979 151 7 0 chr1 21367685 21367831 -175827601 + B1_Mm SINE Alu 1 147 0 7 748 26 0 0 0 chr1 21367845 21367871 -175827561 + AT_rich Low_complexity Low_complexity 1 26 0 7 748 318 202 165 0 chr1 21368469 21368548 -175826884 + PB1D9 SINE Alu 17 108 -12 7 748 1068 93 0 0 chr1 21368550 21368690 -175826742 + B1_Mus1 SINE Alu 3 142 -6 7 748 243 0 0 0 chr1 21368692 21368719 -175826713 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 748 2976 158 22 13 chr1 21368747 21369297 -175826135 + RLTR1D LTR ERV1 35 589 -16 7 748 298 209 163 0 chr1 21369311 21369397 -175826035 - B2_Mm2 SINE B2 -68 127 28 7 748 254 333 31 8 chr1 21370574 21370701 -175824731 + B1_Mur1 SINE Alu 2 131 -18 7 748 566 246 36 7 chr1 21371137 21371276 -175824156 - B1_Mur2 SINE Alu -5 144 2 7 748 234 305 10 10 chr1 21371438 21371534 -175823898 + A-rich Low_complexity Low_complexity 3 98 0 7 748 780 152 8 0 chr1 21371609 21371741 -175823691 + B1_Mus2 SINE Alu 3 135 -12 7 748 321 26 0 0 chr1 21371742 21371780 -175823652 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 7 748 234 321 35 21 chr1 21371793 21371809 -175823623 + ID_B1 SINE B4 79 223 -1 7 748 316 254 102 39 chr1 21371809 21371936 -175823496 + B1F1 SINE Alu 14 148 -1 7 748 1117 69 7 0 chr1 21371979 21372124 -175823308 - B1_Mus1 SINE Alu 0 148 3 7 748 260 188 30 30 chr1 21372244 21372343 -175823089 + A-rich Low_complexity Low_complexity 5 103 0 7 748 323 91 0 35 chr1 21372479 21372536 -175822896 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 7 748 198 0 0 0 chr1 21373189 21373211 -175822221 + (T)n Simple_repeat Simple_repeat 1 22 0 7 748 1055 122 0 0 chr1 21373211 21373358 -175822074 - B1_Mus2 SINE Alu 0 147 1 7 748 316 231 269 0 chr1 21373557 21373665 -175821767 + B1_Mur2 SINE Alu 13 149 0 7 748 515 184 131 28 chr1 21374482 21374627 -175820805 - B2_Mm2 SINE B2 -8 187 28 7 748 571 268 19 21 chr1 21376435 21376628 -175818804 - B3 SINE B2 -12 183 1 7 748 605 267 7 0 chr1 21376637 21376772 -175818660 - B1_Mur2 SINE Alu -7 142 7 7 748 351 260 170 72 chr1 21376814 21377149 -175818283 + RLTR9A LTR ERVK 1 368 0 7 748 1247 41 0 0 chr1 21377350 21377497 -175817935 + B1_Mus2 SINE Alu 1 147 0 7 748 227 54 27 0 chr1 21377497 21377534 -175817898 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 7 748 286 179 235 12 chr1 21378091 21378176 -175817256 + PB1D9 SINE Alu 17 120 0 7 748 701 180 206 11 chr1 21378312 21378492 -175816940 + B3 SINE B2 1 215 -1 7 748 247 104 42 0 chr1 21378514 21378562 -175816870 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 7 748 371 229 115 0 chr1 21378765 21378861 -175816571 - B1_Mus2 SINE Alu -42 107 1 7 748 678 149 155 0 chr1 21378868 21379042 -175816390 - Lx9 LINE L1 -1 7643 7443 7 748 576 221 2 2 chr1 21379177 21379321 -175816111 + B1_Mm SINE Alu 6 149 0 7 748 888 231 104 49 chr1 21379986 21380332 -175815100 - RMER15 LTR ERVL -73 502 138 7 748 566 183 40 47 chr1 21380348 21380497 -175814935 - B1_Mus1 SINE Alu 0 148 1 7 748 309 250 25 12 chr1 21380436 21380517 -175814915 - B4 SINE B4 -146 146 65 7 748 272 219 107 62 chr1 21380496 21380608 -175814824 - RMER15 LTR ERVL -430 145 29 7 748 201 154 0 0 chr1 21380650 21380689 -175814743 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 7 748 561 274 0 7 chr1 21380689 21380836 -175814596 - B1_Mur1 SINE Alu -1 148 3 7 748 229 26 53 0 chr1 21382061 21382099 -175813333 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 748 560 204 0 15 chr1 21382669 21382803 -175812629 + Lx9 LINE L1 7512 7643 -1 7 748 235 240 130 40 chr1 21382815 21382915 -175812517 + B1_Mus2 SINE Alu 14 122 -25 7 748 246 217 16 16 chr1 21382928 21382989 -175812443 - B1_Mur3 SINE Alu -81 68 8 7 748 513 188 20 0 chr1 21383395 21383496 -175811936 - PB1D9 SINE Alu -2 118 16 7 748 758 197 7 0 chr1 21383908 21384055 -175811377 - B1_Mus1 SINE Alu 0 148 1 7 748 21 71 0 0 chr1 21384169 21384211 -175811221 + AT_rich Low_complexity Low_complexity 1 42 0 7 748 809 147 12 0 chr1 21384321 21384465 -175810967 + B2_Mm2 SINE B2 2 161 -55 7 748 225 0 0 0 chr1 21384479 21384504 -175810928 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 748 25 31 0 0 chr1 21384563 21384595 -175810837 + AT_rich Low_complexity Low_complexity 1 32 0 7 748 596 239 88 0 chr1 21384810 21384969 -175810463 - B3 SINE B2 -14 202 30 7 748 207 0 0 0 chr1 21384970 21384993 -175810439 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 748 594 0 0 0 chr1 21384993 21385058 -175810374 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 748 523 158 182 8 chr1 21385059 21385180 -175810252 - B1_Mur1 SINE Alu -2 147 6 7 748 235 250 143 13 chr1 21385275 21385352 -175810080 + MTE2b LTR MaLR 1 87 -292 7 748 674 341 4 18 chr1 21385356 21385583 -175809849 + MTE2b LTR MaLR 61 284 -95 7 748 4376 107 58 6 chr1 21385896 21386537 -175808895 + RLTR33 LTR ERVK 5 678 0 7 748 229 203 26 26 chr1 21386802 21386878 -175808554 + T-rich Low_complexity Low_complexity 3 78 0 7 748 1348 99 0 20 chr1 21386890 21387085 -175808347 - B2_Mm2 SINE B2 -3 192 2 7 748 1125 68 7 0 chr1 21387089 21387235 -175808197 - B1_Mus2 SINE Alu 0 147 1 7 748 529 273 53 21 chr1 21387243 21387430 -175808002 - B3 SINE B2 -9 207 15 7 748 1123 79 0 0 chr1 21387839 21387979 -175807453 + B1_Mus1 SINE Alu 2 141 -7 7 748 442 0 0 33 chr1 21387979 21388039 -175807393 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 7 748 23 0 0 0 chr1 21388666 21388689 -175806743 + AT_rich Low_complexity Low_complexity 1 23 0 7 748 22 0 0 0 chr1 21388721 21388743 -175806689 + AT_rich Low_complexity Low_complexity 1 22 0 7 748 835 173 29 0 chr1 21390057 21390196 -175805236 - B1_Mur1 SINE Alu -5 144 2 7 748 332 298 12 0 chr1 21390661 21390745 -175804687 - PB1D10 SINE Alu -15 102 18 7 748 285 29 0 0 chr1 21393471 21393505 -175801927 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 7 748 644 242 38 0 chr1 21393666 21393798 -175801634 + B1_Mur2 SINE Alu 1 137 -12 7 748 22 0 0 0 chr1 21393809 21393831 -175801601 + AT_rich Low_complexity Low_complexity 1 22 0 7 748 240 143 0 0 chr1 21394046 21394088 -175801344 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 7 748 999 74 73 7 chr1 21394089 21394225 -175801207 - B1_Mm SINE Alu -2 145 1 7 748 957 127 140 0 chr1 21394300 21394457 -175800975 - B2_Mm2 SINE B2 -15 180 2 7 748 980 151 7 0 chr1 21394562 21394708 -175800724 + B1_Mur3 SINE Alu 2 148 -1 7 748 775 211 106 45 chr1 21394722 21394921 -175800511 + B3 SINE B2 1 211 -5 7 748 705 226 82 12 chr1 21395183 21395353 -175800079 - B3A SINE B2 -16 182 1 7 748 298 277 33 83 chr1 21396103 21396225 -175799207 + PB1 SINE Alu 15 149 0 8 748 220 328 0 49 chr1 21396225 21396286 -175799146 + ID4 SINE ID 3 60 -23 8 748 1025 281 22 44 chr1 21396615 21396887 -175798545 + B4A SINE B4 27 292 0 8 748 324 0 0 0 chr1 21396922 21396958 -175798474 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 748 222 208 0 0 chr1 21397024 21397072 -175798360 + CT-rich Low_complexity Low_complexity 2 49 0 8 748 457 307 43 6 chr1 21397492 21397656 -175797776 - Charlie19a DNA Charlie -183 203 34 8 748 565 96 0 21 chr1 21397961 21398057 -175797375 + (TCC)n Simple_repeat Simple_repeat 3 96 0 8 748 25 0 0 0 chr1 21398069 21398094 -175797338 + AT_rich Low_complexity Low_complexity 1 25 0 8 748 709 201 0 28 chr1 21398094 21398237 -175797195 - B1_Mur4 SINE Alu -1 149 11 8 748 225 0 0 0 chr1 21398249 21398274 -175797158 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 748 426 209 77 0 chr1 21398395 21398486 -175796946 + B4A SINE B4 185 282 -10 8 748 215 294 0 81 chr1 21398828 21398902 -175796530 - L2b LINE L2 -53 3322 3255 8 748 189 0 0 0 chr1 21399496 21399517 -175795915 + (T)n Simple_repeat Simple_repeat 1 21 0 8 748 836 120 53 0 chr1 21399517 21399650 -175795782 - B1_Mur4 SINE Alu 0 150 11 8 748 22 0 0 0 chr1 21400305 21400327 -175795105 + AT_rich Low_complexity Low_complexity 1 22 0 8 748 260 311 73 16 chr1 21400384 21400508 -175794924 - MIR SINE MIR -121 141 11 8 748 5495 26 21 2 chr1 21400508 21401126 -175794306 - L1Md_F3 LINE L1 -12 6572 5943 8 748 357 196 278 0 chr1 21401897 21401994 -175793438 - MER5B DNA MER1_type -8 170 47 8 748 383 268 142 28 chr1 21402003 21402135 -175793297 - PB1 SINE Alu -5 144 7 8 748 351 0 0 0 chr1 21402148 21402187 -175793245 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 748 289 297 40 0 chr1 21402192 21402266 -175793166 - ID4 SINE ID -4 79 3 8 748 568 185 213 25 chr1 21402780 21402902 -175792530 + B1_Mur4 SINE Alu 5 149 -1 8 748 814 282 30 5 chr1 21403375 21403578 -175791854 - B3 SINE B2 -8 208 1 8 748 1321 142 81 104 chr1 21403672 21403970 -175791462 + ORR1B1 LTR MaLR 47 337 -57 8 748 667 170 116 13 chr1 21403970 21404125 -175791307 + Lx4B LINE L1 6884 7054 -4 8 748 320 137 0 0 chr1 21404137 21404188 -175791244 + ORR1B1 LTR MaLR 340 390 -4 8 748 444 19 0 0 chr1 21404248 21404301 -175791131 + (TCC)n Simple_repeat Simple_repeat 2 54 0 8 748 794 217 0 27 chr1 21404303 21404450 -175790982 - B1_Mur3 SINE Alu -5 144 2 8 748 525 32 0 0 chr1 21405808 21405871 -175789561 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 8 748 2444 77 12 61 chr1 21405963 21406307 -175789125 + ORR1A2 LTR MaLR 1 327 0 8 748 1242 56 21 0 chr1 21406377 21406521 -175788911 - B1_Mus1 SINE Alu 0 148 2 8 748 225 282 27 27 chr1 21406534 21406607 -175788825 - B1_Mur4 SINE Alu 0 150 78 8 748 456 368 23 28 chr1 21406665 21406883 -175788549 - B4A SINE B4 -8 284 68 8 748 28 0 0 0 chr1 21406912 21406940 -175788492 + AT_rich Low_complexity Low_complexity 1 28 0 8 748 299 202 37 0 chr1 21406940 21407049 -175788383 + (TA)n Simple_repeat Simple_repeat 1 113 0 8 748 219 171 14 41 chr1 21407595 21407668 -175787764 + CT-rich Low_complexity Low_complexity 1 71 0 8 748 1420 66 21 47 chr1 21407783 21407974 -175787458 - B2_Mm2 SINE B2 -8 187 2 8 748 300 266 0 71 chr1 21408148 21408233 -175787199 + ID4_ SINE ID 1 79 -4 8 748 295 258 0 15 chr1 21408518 21408585 -175786847 - ID4 SINE ID -4 79 14 8 748 438 153 16 86 chr1 21408875 21409118 -175786314 - RMER17B LTR ERVK -398 508 283 8 748 687 292 35 96 chr1 21409289 21409486 -175785946 - B3A SINE B2 -8 185 1 8 748 1355 102 17 0 chr1 21409566 21409743 -175785689 + B2_Mm2 SINE B2 2 181 -14 8 748 1011 131 15 0 chr1 21409866 21410003 -175785429 - B1_Mur4 SINE Alu -10 140 2 8 748 324 0 0 0 chr1 21410378 21410414 -175785018 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 748 738 256 42 24 chr1 21410417 21410585 -175784847 - B3A SINE B2 -27 171 1 8 748 24 0 0 0 chr1 21410667 21410691 -175784741 + AT_rich Low_complexity Low_complexity 1 24 0 8 748 198 128 0 0 chr1 21410783 21410822 -175784610 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 8 748 646 243 65 124 chr1 21410869 21411080 -175784352 + B4A SINE B4 4 215 -77 8 748 1264 34 0 33 chr1 21411080 21411232 -175784200 + B1_Mm SINE Alu 1 147 0 8 748 646 243 65 124 chr1 21411232 21411311 -175784121 + B4A SINE B4 216 277 -15 8 748 556 280 7 47 chr1 21411386 21411536 -175783896 + ID_B1 SINE B4 81 224 0 8 748 799 189 35 61 chr1 21411565 21411762 -175783670 + B2_Mm2 SINE B2 3 194 -1 8 748 363 250 41 193 chr1 21412170 21412413 -175783019 + MER3 DNA MER1_type 1 206 -3 8 748 3182 70 2 27 chr1 21412419 21412829 -175782603 - MTB LTR MaLR 0 400 1 8 748 831 208 52 23 chr1 21412829 21413001 -175782431 - B3 SINE B2 -17 199 23 8 748 570 51 0 0 chr1 21413042 21413120 -175782312 + (TCTCTG)n Simple_repeat Simple_repeat 2 79 0 8 748 251 289 3 0 chr1 21413126 21413184 -175782248 - PB1D10 SINE Alu -16 133 53 8 748 254 388 58 34 chr1 21414448 21414656 -175780776 - MamSINE1 SINE tRNA -77 213 1 8 748 195 250 73 83 chr1 21414831 21414927 -175780505 - MIR SINE MIR -107 155 61 8 748 573 327 6 18 chr1 21416205 21416370 -175779062 - RSINE1 SINE B4 0 165 3 8 748 740 50 0 10 chr1 21416910 21417012 -175778420 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 8 748 716 191 72 14 chr1 21417212 21417350 -175778082 + B1_Mur4 SINE Alu 5 150 0 8 748 459 0 0 0 chr1 21417756 21417807 -175777625 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 748 3202 23 0 3 chr1 21418650 21418997 -175776435 + ORR1A0 LTR MaLR 1 346 0 8 748 230 234 64 13 chr1 21419110 21419188 -175776244 - L1MA5 LINE L1 -43 6257 6176 8 748 624 27 0 0 chr1 21419196 21419270 -175776162 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 8 748 759 218 30 0 chr1 21419773 21419906 -175775526 + RSINE1 SINE B4 15 151 -14 8 748 875 156 6 0 chr1 21420013 21420173 -175775259 + CT-rich Low_complexity Low_complexity 2 162 0 8 748 508 167 50 30 chr1 21420173 21420272 -175775160 - B1_Mur3 SINE Alu 0 149 49 8 748 25 0 0 0 chr1 21420319 21420344 -175775088 + AT_rich Low_complexity Low_complexity 1 25 0 8 748 5581 77 40 1 chr1 21420344 21421075 -175774357 - L1_Mus4 LINE L1 -7 6629 5871 8 748 369 145 0 0 chr1 21421312 21421374 -175774058 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 8 748 619 284 65 42 chr1 21421385 21421602 -175773830 - ID_B1 SINE B4 -2 222 1 8 748 588 143 0 0 chr1 21421711 21421809 -175773623 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 8 748 21 36 0 0 chr1 21422300 21422328 -175773104 + AT_rich Low_complexity Low_complexity 1 28 0 8 748 232 290 63 16 chr1 21423685 21423748 -175771684 - ID4 SINE ID -13 70 5 8 748 369 0 0 0 chr1 21423893 21423934 -175771498 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 748 201 218 36 0 chr1 21423934 21423989 -175771443 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 8 748 309 26 0 0 chr1 21424755 21424793 -175770639 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 748 258 32 0 0 chr1 21424795 21424826 -175770606 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 748 594 285 66 42 chr1 21424836 21425125 -175770307 + HAL1 LINE L1 13 308 -2199 8 748 510 276 68 34 chr1 21425201 21425377 -175770055 + MTE2a LTR MaLR 198 379 0 8 748 1439 67 50 0 chr1 21425484 21425663 -175769769 + B2_Mm2 SINE B2 1 188 -7 8 748 420 228 30 0 chr1 21426433 21426534 -175768898 - L1_Mur3 LINE L1 -542 5758 5655 8 748 255 61 0 0 chr1 21426562 21426595 -175768837 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 8 748 775 280 43 0 chr1 21426600 21426786 -175768646 - B3 SINE B2 -22 194 1 8 748 820 247 31 1 chr1 21426786 21427015 -175768417 - L1_Mur3 LINE L1 -693 5607 5338 8 748 592 303 52 36 chr1 21427506 21427698 -175767734 + B3A SINE B2 1 195 -3 8 748 216 86 0 0 chr1 21427701 21427736 -175767696 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 748 1167 73 0 0 chr1 21427740 21427876 -175767556 - B1_Mm SINE Alu -11 136 1 8 748 321 261 32 11 chr1 21428177 21428270 -175767162 - ID_B1 SINE B4 -1 223 129 8 748 1185 82 7 7 chr1 21428312 21428460 -175766972 - B1_Mus1 SINE Alu 0 148 1 8 748 477 192 0 0 chr1 21428460 21428533 -175766899 - ID_B1 SINE B4 -68 156 84 8 748 408 195 25 25 chr1 21428533 21428612 -175766820 - ID4 SINE ID -2 81 3 8 748 295 157 29 0 chr1 21429094 21429164 -175766268 + GA-rich Low_complexity Low_complexity 1 72 0 8 748 21 36 0 0 chr1 21429275 21429303 -175766129 + AT_rich Low_complexity Low_complexity 1 28 0 8 748 294 295 53 0 chr1 21430067 21430162 -175765270 + MLT1H LTR MaLR 450 549 0 8 748 1168 38 0 8 chr1 21430349 21430483 -175764949 - B1_Mm SINE Alu -12 135 3 8 748 22 0 0 0 chr1 21430844 21430866 -175764566 + AT_rich Low_complexity Low_complexity 1 22 0 8 748 180 321 142 0 chr1 21431729 21431835 -175763597 - L3 LINE CR1 -170 4319 4199 8 748 456 19 0 0 chr1 21432080 21432133 -175763299 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 748 2467 99 9 0 chr1 21432451 21432775 -175762657 + ORR1A2 LTR MaLR 1 327 0 8 748 395 291 102 29 chr1 21432834 21433039 -175762393 + MLT1F2 LTR MaLR 334 553 -7 8 748 360 185 114 8 chr1 21433050 21433181 -175762251 + Lx9 LINE L1 7485 7629 -15 8 748 410 277 20 0 chr1 21433185 21433286 -175762146 + MLT1A0 LTR MaLR 72 174 -191 9 748 331 289 13 19 chr1 21433312 21433433 -175761999 + MLT1A0 LTR MaLR 259 435 -32 9 748 293 261 78 78 chr1 21433920 21433941 -175761491 + MT2B LTR ERVL 150 278 -323 9 748 552 194 130 0 chr1 21433941 21434049 -175761383 + B1_Mur2 SINE Alu 1 122 -27 9 748 268 321 56 19 chr1 21434900 21435008 -175760424 - PB1D10 SINE Alu 0 117 6 9 748 355 309 51 7 chr1 21435215 21435352 -175760080 + Lx8 LINE L1 5664 5806 -1667 9 748 1700 146 23 68 chr1 21435361 21435715 -175759717 + ORR1A1 LTR MaLR 1 338 -8 9 748 1906 305 153 71 chr1 21435725 21437112 -175758320 + Lx8 LINE L1 5817 7316 -157 9 748 416 248 136 57 chr1 21439100 21439416 -175756016 + L1_Mur3 LINE L1 1340 1680 -4200 9 748 33 25 0 0 chr1 21439416 21439456 -175755976 + AT_rich Low_complexity Low_complexity 1 40 0 9 748 731 221 110 26 chr1 21439474 21439505 -175755927 - B3 SINE B2 -8 208 179 9 748 455 57 29 0 chr1 21439505 21439575 -175755857 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 9 748 1284 57 0 0 chr1 21439575 21439734 -175755698 - B2_Mm1t SINE B2 -33 160 2 9 748 48 32 0 0 chr1 21439739 21439801 -175755631 + AT_rich Low_complexity Low_complexity 1 62 0 9 748 450 302 115 19 chr1 21439801 21440061 -175755371 + L1M2 LINE L1 2290 2574 -4275 9 748 352 264 26 60 chr1 21440262 21440379 -175755053 + Lx9 LINE L1 7352 7464 -180 9 748 396 0 0 0 chr1 21440379 21440423 -175755009 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 748 228 111 0 0 chr1 21440543 21440579 -175754853 + (CAA)n Simple_repeat Simple_repeat 1 36 0 9 748 240 243 98 98 chr1 21440580 21440703 -175754729 + L1M2 LINE L1 3313 3435 -3407 9 748 202 29 57 0 chr1 21440736 21440771 -175754661 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 9 748 22 35 0 0 chr1 21440906 21440935 -175754497 + AT_rich Low_complexity Low_complexity 1 29 0 9 748 816 98 24 0 chr1 21441241 21441364 -175754068 - B2_Mm2 SINE B2 -69 126 1 9 748 469 325 75 21 chr1 21441366 21441740 -175753692 + L1M2 LINE L1 3442 3835 -3010 9 748 202 185 18 18 chr1 21442402 21442420 -175753012 + (TTAA)n Simple_repeat Simple_repeat 3 20 0 9 748 645 236 7 21 chr1 21442420 21442563 -175752869 + B1_Mur1 SINE Alu 1 141 -8 9 748 202 185 18 18 chr1 21442563 21442599 -175752833 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 9 748 652 279 80 17 chr1 21442601 21442776 -175752656 - B3 SINE B2 -25 191 6 9 748 354 287 0 78 chr1 21442801 21442903 -175752529 - ID_B1 SINE B4 -6 218 125 9 748 283 379 86 15 chr1 21443636 21443839 -175751593 + MIR SINE MIR 44 268 0 9 748 854 144 14 0 chr1 21444127 21444266 -175751166 - B1_Mus1 SINE Alu -1 147 7 9 748 23 0 0 0 chr1 21445055 21445078 -175750354 + AT_rich Low_complexity Low_complexity 1 23 0 9 748 796 322 78 27 chr1 21445431 21445763 -175749669 + MLT1B LTR MaLR 9 357 -33 9 748 352 294 22 5 chr1 21445756 21445842 -175749590 - PB1D10 SINE Alu -58 91 2 9 748 240 86 0 0 chr1 21447094 21447129 -175748303 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 9 748 381 43 0 0 chr1 21447415 21447462 -175747970 + (A)n Simple_repeat Simple_repeat 1 47 0 9 748 22 103 0 0 chr1 21449791 21449869 -175745563 + AT_rich Low_complexity Low_complexity 1 78 0 9 748 762 266 24 124 chr1 21450031 21450075 -175745357 - B3 SINE B2 -25 191 153 9 748 216 0 0 0 chr1 21450075 21450099 -175745333 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 9 748 762 290 21 0 chr1 21450099 21450264 -175745168 - B3 SINE B2 -47 169 3 9 748 738 154 69 0 chr1 21450351 21450481 -175744951 + B1_Mur1 SINE Alu 11 149 0 9 748 288 53 0 0 chr1 21450835 21450873 -175744559 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 748 23 0 0 0 chr1 21451411 21451434 -175743998 + AT_rich Low_complexity Low_complexity 1 23 0 9 748 360 0 0 0 chr1 21452080 21452120 -175743312 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 748 576 216 35 95 chr1 21454099 21454299 -175741133 - B3A SINE B2 0 198 11 9 748 1131 199 32 29 chr1 21454427 21454707 -175740725 + Lx5 LINE L1 6770 7050 0 9 748 24 32 0 0 chr1 21456020 21456051 -175739381 + AT_rich Low_complexity Low_complexity 1 31 0 9 748 3313 62 13 7 chr1 21457067 21457539 -175737893 - L1Md_F2 LINE L1 0 6582 6109 9 748 215 247 11 0 chr1 21459129 21459218 -175736214 + (TG)n Simple_repeat Simple_repeat 1 90 0 9 748 559 167 0 0 chr1 21460148 21460250 -175735182 + Lx4A LINE L1 6956 7057 -1 9 748 333 321 148 24 chr1 21460892 21461230 -175734202 + L1ME3A LINE L1 5636 6015 -158 9 748 340 327 19 9 chr1 21461643 21461748 -175733684 - PB1D7 SINE Alu 0 120 15 9 748 309 258 185 22 chr1 21462272 21462324 -175733108 - HAL1-3A_ME LINE L1 -418 2440 2385 9 748 1308 79 0 0 chr1 21462324 21462502 -175732930 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 9 748 309 258 185 22 chr1 21462502 21462584 -175732848 - HAL1-3A_ME LINE L1 -474 2384 2284 9 748 316 155 14 14 chr1 21462590 21462662 -175732770 + (TA)n Simple_repeat Simple_repeat 2 73 0 9 748 506 158 0 0 chr1 21462666 21462767 -175732665 - Lx2B LINE L1 -4 6996 6896 9 748 1374 117 14 0 chr1 21462767 21462981 -175732451 + Lx2 LINE L1 6455 6671 -326 9 748 256 65 109 0 chr1 21462992 21463038 -175732394 - Lx9 LINE L1 -179 7465 7415 9 748 819 227 76 8 chr1 21463813 21463879 -175731553 - L1MA4 LINE L1 -433 5867 5795 9 748 273 57 0 0 chr1 21463879 21463914 -175731518 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 9 748 819 227 76 8 chr1 21463914 21464096 -175731336 - L1MA4 LINE L1 -506 5794 5603 9 748 1499 240 55 3 chr1 21464401 21464744 -175730688 + MTD LTR MaLR 59 419 0 9 748 671 342 78 16 chr1 21464746 21465245 -175730187 - HAL1 LINE L1 -837 1670 1141 9 748 447 106 0 0 chr1 21465245 21465311 -175730121 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 9 748 273 250 164 26 chr1 21465459 21465611 -175729821 + Lx8 LINE L1 7294 7466 -7 9 748 248 316 10 39 chr1 21465642 21465744 -175729688 + MIRc SINE MIR 168 266 -2 9 748 1421 68 0 31 chr1 21466947 21467143 -175728289 - B2_Mm2 SINE B2 -4 191 2 9 748 183 26 24 71 chr1 21467386 21467428 -175728004 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 9 748 1136 89 0 0 chr1 21467430 21467576 -175727856 - B1_Mus2 SINE Alu 0 147 2 9 748 952 204 94 5 chr1 21467610 21467802 -175727630 - B3 SINE B2 -6 210 2 9 748 763 176 49 14 chr1 21467826 21467970 -175727462 - B1_Mur4 SINE Alu 0 150 2 9 748 733 37 9 0 chr1 21468072 21468180 -175727252 + L1Md_F2 LINE L1 6474 6582 0 9 748 322 85 17 17 chr1 21468711 21468771 -175726661 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 9 748 441 0 0 0 chr1 21470151 21470200 -175725232 + (CAA)n Simple_repeat Simple_repeat 2 50 0 9 748 450 305 35 55 chr1 21470377 21470578 -175724854 - B3A SINE B2 0 198 2 9 748 23 0 0 0 chr1 21470983 21471006 -175724426 + AT_rich Low_complexity Low_complexity 1 23 0 9 748 1608 74 5 0 chr1 21471595 21471811 -175723621 - L1Md_T LINE L1 0 6582 6366 9 748 1714 186 84 3 chr1 21472935 21473290 -175722142 + MTC LTR MaLR 1 384 0 9 748 3392 155 141 109 chr1 21473292 21474416 -175721016 + MTC-int LTR MaLR 1 1256 -2 9 748 2103 181 58 5 chr1 21474418 21474818 -175720614 + MTC LTR MaLR 1 421 0 9 748 225 143 0 0 chr1 21475581 21475616 -175719816 + B1_Mus2 SINE Alu 100 134 -13 9 748 315 0 0 0 chr1 21475617 21475652 -175719780 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 748 872 288 76 73 chr1 21475895 21476277 -175719155 + MLT1B LTR MaLR 6 388 -2 9 748 285 135 0 0 chr1 21477929 21477981 -175717451 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 748 473 165 36 27 chr1 21478004 21478116 -175717316 - L1M3 LINE L1 -1920 4220 4108 9 748 33 25 0 0 chr1 21478116 21478156 -175717276 + AT_rich Low_complexity Low_complexity 1 40 0 9 748 502 386 13 0 chr1 21478156 21478314 -175717118 - RSINE1 SINE B4 0 165 6 9 748 21 0 0 0 chr1 21478324 21478345 -175717087 + AT_rich Low_complexity Low_complexity 1 21 0 9 748 249 33 0 0 chr1 21478363 21478393 -175717039 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 748 398 285 137 8 chr1 21478424 21478555 -175716877 - B3A SINE B2 -47 151 4 9 748 227 167 0 45 chr1 21478581 21478625 -175716807 + L1M2 LINE L1 5877 5918 -382 9 748 2067 194 57 16 chr1 21478648 21479157 -175716275 - Lx9 LINE L1 -8 7636 7107 9 748 252 317 61 38 chr1 21479194 21479325 -175716107 + L2 LINE L2 2523 2656 -763 9 748 708 71 0 0 chr1 21479658 21479757 -175715675 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 9 748 315 305 65 28 chr1 21479803 21479911 -175715521 - PB1D7 SINE Alu -8 112 1 9 748 189 282 0 49 chr1 21480020 21480061 -175715371 + MIRm SINE MIR 208 246 -30 9 748 770 267 93 0 chr1 21482785 21482813 -175712619 - B3 SINE B2 -6 210 183 9 748 372 94 0 0 chr1 21482813 21482866 -175712566 + (TATG)n Simple_repeat Simple_repeat 2 54 0 9 748 770 267 93 0 chr1 21482866 21483009 -175712423 - B3 SINE B2 -34 182 24 9 748 263 299 94 31 chr1 21483065 21483224 -175712208 - Tigger13a DNA MER2_type -308 463 295 9 748 1029 212 60 5 chr1 21483241 21483440 -175711992 + MTC LTR MaLR 1 210 -211 9 748 5396 137 2 20 chr1 21483440 21484431 -175711001 - L1_Mur2 LINE L1 -1938 3939 2967 9 748 557 257 0 0 chr1 21484540 21484649 -175710783 + PB1D10 SINE Alu 7 115 -2 9 748 446 363 62 62 chr1 21484651 21484927 -175710505 + B4 SINE B4 3 278 -14 9 748 235 181 26 87 chr1 21485008 21485123 -175710309 + A-rich Low_complexity Low_complexity 3 110 0 9 748 258 105 0 0 chr1 21485212 21485250 -175710182 + (T)n Simple_repeat Simple_repeat 1 38 0 9 748 1271 31 0 12 chr1 21485444 21485605 -175709827 + (TCTCC)n Simple_repeat Simple_repeat 1 159 0 9 748 691 298 63 37 chr1 21485988 21486256 -175709176 + B4A SINE B4 2 276 -16 9 748 3233 84 0 0 chr1 21487772 21488226 -175707206 - L1Md_F2 LINE L1 -362 5521 5068 9 748 473 66 0 0 chr1 21488223 21488284 -175707148 + L1Md_F2 LINE L1 5525 5585 -298 9 748 7492 71 8 3 chr1 21488285 21489264 -175706168 + L1Md_F2 LINE L1 5587 6570 -12 9 748 899 78 0 0 chr1 21490491 21490620 -175704812 + L1Md_F2 LINE L1 6442 6570 -12 9 748 318 309 0 16 chr1 21491103 21491228 -175704204 - L1MA4A LINE L1 -376 5927 5805 1 748 804 288 95 7 chr1 21491359 21491677 -175703755 - L1MA4A LINE L1 -562 5738 5389 1 748 834 39 0 0 chr1 21491677 21491779 -175703653 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 748 804 291 91 14 chr1 21491779 21491946 -175703486 - L1MA4A LINE L1 -912 5388 5192 1 748 5010 233 85 17 chr1 21492375 21493741 -175701691 + Lx9 LINE L1 6038 7478 -166 1 748 459 0 0 0 chr1 21493741 21493792 -175701640 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 748 5010 233 85 17 chr1 21493792 21493928 -175701504 + Lx9 LINE L1 7479 7642 -2 1 748 786 286 50 69 chr1 21494103 21494464 -175700968 + LTR37A LTR ERV1 1 354 -72 1 748 917 139 7 0 chr1 21494513 21494650 -175700782 - B1_Mur3 SINE Alu -11 138 1 1 748 477 229 19 28 chr1 21494887 21494995 -175700437 - PB1D10 SINE Alu -1 116 10 1 749 225 0 0 0 chr1 21497524 21497549 -175697883 + (T)n Simple_repeat Simple_repeat 1 25 0 1 749 499 359 24 0 chr1 21497842 21498012 -175697420 - B3A SINE B2 -20 178 5 1 749 879 254 11 0 chr1 21498031 21498220 -175697212 - B3 SINE B2 -23 193 3 1 749 739 178 6 12 chr1 21498601 21498766 -175696666 + CT-rich Low_complexity Low_complexity 1 164 0 1 749 3732 114 20 45 chr1 21498978 21499575 -175695857 + Lx2 LINE L1 6412 6993 -4 1 749 294 264 140 62 chr1 21499677 21499855 -175695577 + B2_Mm2 SINE B2 2 193 -2 1 749 993 101 0 0 chr1 21499861 21500000 -175695432 + L1_Mus3 LINE L1 6169 6307 -331 1 749 2319 68 6 3 chr1 21500001 21500323 -175695109 + L1_Mus3 LINE L1 6309 6631 -7 1 749 29 0 0 0 chr1 21500373 21500402 -175695030 + AT_rich Low_complexity Low_complexity 1 29 0 2 749 1406 277 65 27 chr1 21500445 21501227 -175694205 + Lx8 LINE L1 6260 7124 -349 3 749 294 312 21 0 chr1 21501586 21501679 -175693753 + MER20 DNA MER1_type 25 119 -100 4 749 1047 167 88 0 chr1 21501701 21501905 -175693527 - Lx4A LINE L1 -1 7057 6836 5 749 500 237 87 9 chr1 21503327 21503442 -175691990 - RSINE1 SINE B4 -31 134 11 6 749 231 189 0 0 chr1 21503525 21503562 -175691870 + MER20 DNA MER1_type 183 219 0 4 749 243 61 0 0 chr1 21503568 21503601 -175691831 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 749 28786 111 12 15 chr1 21504538 21506771 -175688661 + L1_Mus2 LINE L1 1020 3178 -2705 8 749 594 0 0 0 chr1 21506771 21506837 -175688595 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 9 749 28786 99 11 8 chr1 21506837 21510239 -175685193 + L1_Mus2 LINE L1 3179 6554 -12 8 749 285 29 0 0 chr1 21512738 21512772 -175682660 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 749 1053 67 37 0 chr1 21512776 21512911 -175682521 - B1_Mm SINE Alu -5 142 3 1 749 22 0 0 0 chr1 21513547 21513569 -175681863 + AT_rich Low_complexity Low_complexity 1 22 0 1 749 22 0 0 0 chr1 21514334 21514356 -175681076 + AT_rich Low_complexity Low_complexity 1 22 0 1 749 570 271 131 23 chr1 21514900 21515426 -175680006 + L1MD2 LINE L1 5587 6188 -171 1 749 37 0 0 0 chr1 21516223 21516260 -175679172 + AT_rich Low_complexity Low_complexity 1 37 0 1 749 963 201 32 41 chr1 21516260 21516478 -175678954 - B3 SINE B2 0 216 1 1 749 686 148 17 6 chr1 21516495 21516637 -175678795 + CT-rich Low_complexity Low_complexity 37 180 0 1 749 180 0 0 0 chr1 21516637 21516657 -175678775 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 749 686 148 17 6 chr1 21516657 21516691 -175678741 + polypyrimidine Low_complexity Low_complexity 2 36 0 1 749 514 288 28 17 chr1 21516710 21516890 -175678542 - B3A SINE B2 -16 182 1 2 749 250 235 14 96 chr1 21516915 21517061 -175678371 - Lx9 LINE L1 -2 7642 7509 2 749 280 209 0 56 chr1 21517091 21517162 -175678270 - B3 SINE B2 -9 207 141 2 749 243 88 0 0 chr1 21517162 21517196 -175678236 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 749 816 219 10 24 chr1 21517240 21517446 -175677986 - Lx9 LINE L1 -261 7383 7181 2 749 375 221 0 0 chr1 21518684 21518770 -175676662 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 749 838 221 121 0 chr1 21518850 21519049 -175676383 - URR1A DNA MER1_type -3 223 1 2 749 228 135 0 0 chr1 21519366 21519403 -175676029 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 749 182 263 123 0 chr1 21519560 21519617 -175675815 + L2a LINE L2 3327 3390 -36 2 749 1323 77 16 32 chr1 21519893 21520081 -175675351 - B2_Mm2 SINE B2 -8 187 3 2 749 261 0 0 0 chr1 21520095 21520124 -175675308 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 749 1005 81 22 7 chr1 21520284 21520421 -175675011 + B1_Mm SINE Alu 1 139 -8 3 749 28 0 0 0 chr1 21520433 21520461 -175674971 + AT_rich Low_complexity Low_complexity 1 28 0 3 749 971 183 111 16 chr1 21520727 21520916 -175674516 + B3 SINE B2 3 209 -7 3 749 318 26 0 0 chr1 21521274 21521313 -175674119 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 749 198 71 0 0 chr1 21521514 21521542 -175673890 + (CAAAC)n Simple_repeat Simple_repeat 1 28 0 3 749 234 143 18 18 chr1 21522383 21522440 -175672992 + A-rich Low_complexity Low_complexity 6 62 0 3 749 1204 246 143 16 chr1 21522574 21522937 -175672495 - MTD LTR MaLR 0 419 11 3 749 392 82 16 0 chr1 21524889 21524950 -175670482 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 749 939 127 0 0 chr1 21524958 21525108 -175670324 + (GA)n Simple_repeat Simple_repeat 1 150 0 3 749 413 332 98 11 chr1 21526629 21526906 -175668526 + LTR84a LTR ERVL 22 322 -435 3 749 354 262 106 24 chr1 21527124 21527370 -175668062 + L1MD LINE L1 2715 2980 -3166 4 749 228 239 54 27 chr1 21527448 21527560 -175667872 + L1MD LINE L1 3145 3259 -2887 4 749 1391 198 18 78 chr1 21527623 21528006 -175667426 - Lx9 LINE L1 -426 7218 6859 4 749 548 255 100 55 chr1 21528015 21528235 -175667197 + RLTR23 LTR ERV1 1 230 -200 4 749 426 39 0 0 chr1 21528776 21528828 -175666604 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 749 602 286 61 0 chr1 21529278 21529474 -175665958 + B3 SINE B2 2 209 -7 4 749 2302 179 5 0 chr1 21530423 21530815 -175664617 - ORR1B1 LTR MaLR 0 394 1 4 749 707 317 45 12 chr1 21531269 21531512 -175663920 + B4A SINE B4 1 251 -41 4 749 2089 200 80 14 chr1 21531512 21531998 -175663434 - Lx7 LINE L1 -768 6928 6411 4 749 1523 232 119 43 chr1 21531999 21532486 -175662946 + Lx7 LINE L1 6943 7466 -230 4 749 252 175 0 0 chr1 21532502 21532565 -175662867 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 749 492 18 0 0 chr1 21532565 21532622 -175662810 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 749 258 179 30 0 chr1 21532636 21532703 -175662729 + Lx7 LINE L1 7605 7673 -23 4 749 21 0 0 0 chr1 21532866 21532887 -175662545 + AT_rich Low_complexity Low_complexity 1 21 0 5 749 5302 186 40 18 chr1 21534694 21535797 -175659635 - Lx5 LINE L1 -3 7047 5921 5 749 436 327 61 81 chr1 21536027 21536323 -175659109 + MamRep434 DNA TcMar 10 299 -127 5 749 21 0 0 0 chr1 21536960 21536981 -175658451 + AT_rich Low_complexity Low_complexity 1 21 0 5 749 324 0 0 0 chr1 21537063 21537099 -175658333 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5 749 1041 93 0 0 chr1 21537101 21537241 -175658191 - B1_Mm SINE Alu -6 141 2 5 749 250 259 122 11 chr1 21537373 21537463 -175657969 - L2a LINE L2 -4 3422 3323 5 749 1960 53 4 0 chr1 21537479 21537726 -175657706 + L1_Mus1 LINE L1 6318 6565 -2 5 749 7022 129 24 2 chr1 21537785 21539747 -175655685 + Lx LINE L1 4647 6654 0 5 749 1511 252 88 11 chr1 21540474 21540847 -175654585 - MTD LTR MaLR 0 419 18 5 749 5768 91 18 13 chr1 21541576 21542396 -175653036 + Lx LINE L1 5825 6648 -6 6 749 1142 54 24 6 chr1 21543707 21543874 -175651558 + L1_Mus3 LINE L1 6463 6632 -6 6 749 627 259 109 0 chr1 21543948 21544149 -175651283 - Tigger7 DNA MER2_type -12 2479 2257 6 749 1098 191 25 0 chr1 21544178 21544382 -175651050 - B3 SINE B2 -7 209 1 6 749 1116 340 64 7 chr1 21544483 21544892 -175650540 - Tigger7 DNA MER2_type -2034 457 26 6 749 23 0 0 0 chr1 21545440 21545463 -175649969 + AT_rich Low_complexity Low_complexity 1 23 0 6 749 875 215 56 10 chr1 21546864 21547061 -175648371 - B3 SINE B2 -10 206 1 6 749 216 339 0 17 chr1 21547208 21547268 -175648164 - PB1D10 SINE Alu -54 63 5 6 749 212 0 36 0 chr1 21547271 21547299 -175648133 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 749 815 209 0 0 chr1 21547308 21547456 -175647976 + B1_Mus1 SINE Alu 1 148 0 6 749 253 238 101 23 chr1 21547993 21548122 -175647310 - L1MA4 LINE L1 -364 5936 5798 6 749 297 0 0 0 chr1 21548365 21548398 -175647034 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 749 23 33 0 0 chr1 21548460 21548490 -175646942 + AT_rich Low_complexity Low_complexity 1 30 0 7 749 1883 177 13 35 chr1 21549286 21549661 -175645771 + ORR1B2 LTR MaLR 1 367 0 7 749 849 245 17 69 chr1 21549743 21549975 -175645457 + B4 SINE B4 1 220 -72 7 749 1372 291 84 30 chr1 21549983 21550960 -175644472 + Lx9 LINE L1 4732 5768 -1876 7 749 210 143 0 0 chr1 21550977 21551012 -175644420 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 7 749 195 279 0 0 chr1 21551930 21551973 -175643459 + L2b LINE L2 3317 3359 -16 7 749 924 36 0 0 chr1 21552267 21552379 -175643053 + (GA)n Simple_repeat Simple_repeat 1 112 0 7 749 284 368 23 23 chr1 21552776 21552904 -175642528 + L2a LINE L2 3026 3153 -273 7 749 879 30 37 7 chr1 21552971 21553107 -175642325 + (TCTA)n Simple_repeat Simple_repeat 2 141 0 7 749 793 126 31 0 chr1 21553145 21553272 -175642160 - URR1B DNA MER1_type -1 224 94 8 749 3162 63 19 7 chr1 21555295 21555710 -175639722 + L1Md_F2 LINE L1 6151 6570 -12 8 749 186 103 0 0 chr1 21555867 21555896 -175639536 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 749 220 169 0 33 chr1 21555905 21555966 -175639466 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 8 749 1191 272 60 9 chr1 21555966 21556400 -175639032 + L1_Mur3 LINE L1 614 1069 -6659 8 749 183 80 0 0 chr1 21556404 21556429 -175639003 + (CAT)n Simple_repeat Simple_repeat 2 26 0 8 749 245 89 16 125 chr1 21556430 21556494 -175638938 + L1_Mur3 LINE L1 2066 2122 -3758 8 749 7203 91 13 3 chr1 21556504 21557656 -175637776 - L1_Mus3 LINE L1 -13 6625 5462 8 749 513 282 146 38 chr1 21557808 21558096 -175637336 + RMER20A LTR ERVK 152 470 -46 8 749 2929 185 16 5 chr1 21558136 21558771 -175636661 + Lx7 LINE L1 3197 3838 -2042 8 749 435 185 0 0 chr1 21558773 21558865 -175636567 + GA-rich Low_complexity Low_complexity 3 94 0 8 749 3129 168 47 50 chr1 21558870 21559366 -175636066 + Lx7 LINE L1 3842 4340 -1540 8 749 6814 87 71 18 chr1 21559366 21560393 -175635039 + Lx3_Mus LINE L1 5928 7009 0 9 749 3129 168 47 50 chr1 21560393 21560661 -175634771 + Lx7 LINE L1 4341 4604 -1276 8 749 6962 211 96 17 chr1 21560642 21562568 -175632864 + Lx7 LINE L1 5306 7353 -343 8 749 267 54 0 0 chr1 21562568 21562605 -175632827 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 9 749 6962 217 91 20 chr1 21562605 21562680 -175632752 + Lx7 LINE L1 7354 7444 -252 8 749 26929 117 16 13 chr1 21562673 21563773 -175631659 - L1VL1 LINE L1 -144 5742 4653 9 749 4593 103 25 69 chr1 21563773 21564558 -175630874 + RMER17A LTR ERVK 1 751 0 9 749 26929 117 16 13 chr1 21564558 21566462 -175628970 - L1VL1 LINE L1 -1234 4652 2732 9 749 3958 60 12 2 chr1 21566462 21566960 -175628472 - RLTR1C LTR ERV1 0 503 1 9 749 26929 117 16 13 chr1 21566960 21568122 -175627310 - L1VL1 LINE L1 -3155 2731 1568 9 749 4928 42 3 2 chr1 21568122 21568715 -175626717 - L1Md_F3 LINE L1 -1 6583 5990 9 749 26929 112 19 32 chr1 21568715 21569270 -175626162 - L1VL1 LINE L1 -4319 1567 939 9 749 246 132 0 0 chr1 21569271 21569324 -175626108 + (T)n Simple_repeat Simple_repeat 1 53 0 9 749 13875 23 0 0 chr1 21569329 21571707 -175623725 - L1Md_T LINE L1 0 6582 4205 9 749 2412 146 36 40 chr1 21571707 21572184 -175623248 + IAPLTR2_Mm LTR ERVK 1 475 0 9 749 3246 53 8 14 chr1 21572186 21572934 -175622498 + IAPEz-int LTR ERVK 3 662 -5819 9 749 887 50 0 8 chr1 21572934 21573054 -175622378 + IAPEz-int LTR ERVK 1359 1477 -5004 9 749 1727 107 8 0 chr1 21573049 21573301 -175622131 + IAPEz-int LTR ERVK 2244 2497 -5183 9 749 886 73 24 0 chr1 21573298 21573421 -175622011 + IAPEz-int LTR ERVK 4785 4910 -2770 9 749 1698 0 0 0 chr1 21573421 21573614 -175621818 + IAPEz-int LTR ERVK 3525 3717 -2764 9 749 8941 10 1 0 chr1 21573613 21574648 -175620784 + IAPEz-int LTR ERVK 5446 6481 0 9 749 2426 138 38 42 chr1 21574648 21575125 -175620307 + IAPLTR2_Mm LTR ERVK 1 475 0 9 749 22449 75 7 12 chr1 21575125 21579073 -175616359 - L1Md_F LINE L1 -1673 4210 281 1 749 567 288 78 34 chr1 21579072 21579541 -175615891 - L1M4c LINE L1 -3850 2532 2046 1 749 629 338 91 7 chr1 21579596 21580002 -175615430 - L1M4c LINE L1 -5903 481 42 1 749 2194 59 24 3 chr1 21580286 21580576 -175614856 - L1_Mus1 LINE L1 -1 6566 6271 1 749 416 51 17 0 chr1 21581405 21581464 -175613968 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1 749 313 292 14 0 chr1 21581925 21581997 -175613435 + ID4 SINE ID 2 74 -9 1 749 307 0 47 0 chr1 21583898 21583941 -175611491 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 749 21 0 0 0 chr1 21584217 21584238 -175611194 + AT_rich Low_complexity Low_complexity 1 21 0 1 749 1876 255 35 0 chr1 21584792 21585271 -175610161 - Lx6 LINE L1 -9 7451 6956 1 749 476 259 72 88 chr1 21585253 21585558 -175609874 - Lx9 LINE L1 -38 7606 7307 1 749 288 291 196 14 chr1 21585640 21585783 -175609649 - MER58A DNA MER1_type -4 220 52 1 749 583 292 102 20 chr1 21585820 21586075 -175609357 + Lx8 LINE L1 6966 7241 -232 1 749 282 385 20 0 chr1 21586103 21586251 -175609181 - MER45A DNA Tip100 -27 151 1 1 749 1106 47 107 0 chr1 21586885 21587035 -175608397 + L1Md_F2 LINE L1 6403 6568 -14 1 749 321 26 0 0 chr1 21587036 21587074 -175608358 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 749 294 236 33 11 chr1 21587344 21587434 -175607998 + Charlie4a DNA MER1_type 231 322 -186 1 749 22 35 0 0 chr1 21587434 21587463 -175607969 + AT_rich Low_complexity Low_complexity 1 29 0 1 749 306 241 119 17 chr1 21587498 21587675 -175607757 + Charlie4 DNA MER1_type 1728 1922 -39 1 749 708 214 0 0 chr1 21588336 21588514 -175606918 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 749 186 71 0 0 chr1 21590759 21590787 -175604645 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 749 337 406 49 14 chr1 21591169 21591456 -175603976 - L3 LINE CR1 -1063 3426 3130 1 749 515 267 88 33 chr1 21592124 21592306 -175603126 + B3A SINE B2 4 195 -3 1 749 674 247 0 0 chr1 21592377 21592523 -175602909 + B1_Mus2 SINE Alu 1 146 -1 1 749 261 57 0 0 chr1 21592562 21592597 -175602835 + (CAG)n Simple_repeat Simple_repeat 1 35 0 1 749 272 216 110 110 chr1 21592614 21592723 -175602709 + PB1D10 SINE Alu 7 115 -2 1 749 269 346 26 0 chr1 21592741 21592819 -175602613 + ID4 SINE ID 2 81 -2 1 749 308 259 99 0 chr1 21592847 21592928 -175602504 + B1F SINE Alu 9 97 -52 1 749 783 59 0 0 chr1 21592942 21593043 -175602389 + (GAA)n Simple_repeat Simple_repeat 2 102 0 1 749 506 234 7 88 chr1 21593370 21593506 -175601926 + RSINE1 SINE B4 3 127 -38 1 749 396 0 0 0 chr1 21593540 21593584 -175601848 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 749 455 102 11 0 chr1 21593978 21594066 -175601366 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 749 456 279 16 10 chr1 21594090 21594282 -175601150 - L1MA4 LINE L1 -388 5912 5720 1 749 840 278 10 24 chr1 21594312 21594607 -175600825 - L1MA4 LINE L1 -1163 4980 4690 1 749 942 123 26 0 chr1 21594636 21594791 -175600641 + URR1A DNA MER1_type 68 226 0 1 749 375 240 3 72 chr1 21594834 21594996 -175600436 - L1MA4 LINE L1 -1516 4627 4449 1 749 888 261 9 14 chr1 21595113 21595323 -175600109 - B3 SINE B2 -7 209 1 1 749 186 375 124 67 chr1 21595821 21596104 -175599328 - L2a LINE L2 0 3426 3128 1 749 466 331 61 92 chr1 21596262 21596430 -175599002 + B4A SINE B4 9 174 -118 1 749 234 0 0 0 chr1 21596430 21596456 -175598976 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 749 466 331 61 92 chr1 21596456 21596580 -175598852 + B4A SINE B4 175 292 0 1 749 209 163 20 0 chr1 21596583 21596632 -175598800 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 749 22 35 0 0 chr1 21597063 21597092 -175598340 + AT_rich Low_complexity Low_complexity 1 29 0 1 749 573 64 0 0 chr1 21599199 21599277 -175596155 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 749 347 316 10 10 chr1 21599278 21599377 -175596055 - B3A SINE B2 -44 154 56 1 749 24 32 0 0 chr1 21599416 21599447 -175595985 + AT_rich Low_complexity Low_complexity 1 31 0 1 749 568 245 60 14 chr1 21599459 21599651 -175595781 - B3 SINE B2 -3 213 1 1 749 664 311 57 0 chr1 21599989 21600182 -175595250 - MER58A DNA MER1_type -15 209 6 1 749 326 278 218 17 chr1 21600201 21600435 -175594997 + Lx8 LINE L1 7164 7444 -29 1 749 1106 56 27 40 chr1 21600780 21600929 -175594503 - B1_Mus1 SINE Alu -1 147 1 1 749 300 367 23 15 chr1 21602068 21602198 -175593234 + MIRc SINE MIR 19 149 -119 1 749 213 94 0 0 chr1 21602933 21602965 -175592467 + (TATG)n Simple_repeat Simple_repeat 3 34 0 1 749 723 219 31 61 chr1 21603761 21603931 -175591501 + B3 SINE B2 1 162 -33 1 749 294 29 0 0 chr1 21603931 21603966 -175591466 + (CCA)n Simple_repeat Simple_repeat 1 35 0 1 749 530 220 52 83 chr1 21603966 21603988 -175591444 + B2_Mm2 SINE B2 163 186 -9 1 749 454 254 57 33 chr1 21604967 21605082 -175590350 + RSINE1 SINE B4 31 150 -15 1 749 486 0 0 0 chr1 21605082 21605136 -175590296 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 749 495 0 0 0 chr1 21605136 21605190 -175590242 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 749 1235 283 100 19 chr1 21606674 21607135 -175588297 + MER82 DNA MER2_type 2 499 -154 1 749 498 33 0 0 chr1 21607135 21607195 -175588237 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 749 33 25 0 0 chr1 21608046 21608086 -175587346 + AT_rich Low_complexity Low_complexity 1 40 0 1 749 207 0 0 0 chr1 21608458 21608481 -175586951 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 749 933 296 125 22 chr1 21608515 21608836 -175586596 - MTE2a LTR MaLR -25 354 1 1 749 936 270 104 45 chr1 21608841 21609178 -175586254 - ORR1E LTR MaLR -2 357 1 1 749 244 182 0 0 chr1 21610008 21610063 -175585369 + Lx7 LINE L1 6849 6903 -793 1 749 519 60 0 0 chr1 21610064 21610131 -175585301 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 1 749 1782 258 124 9 chr1 21610138 21610686 -175584746 + Lx6 LINE L1 6850 7460 0 1 749 24 0 0 0 chr1 21610686 21610710 -175584722 + AT_rich Low_complexity Low_complexity 1 24 0 1 749 23 33 0 0 chr1 21611977 21612007 -175583425 + AT_rich Low_complexity Low_complexity 1 30 0 1 749 706 287 23 0 chr1 21613309 21613483 -175581949 + B3A SINE B2 3 180 -18 1 749 1507 104 4 44 chr1 21614167 21614418 -175581014 - L1_Mus4 LINE L1 -2 6634 6394 1 749 18744 125 33 3 chr1 21615206 21619046 -175576386 + L1Md_F LINE L1 116 4071 -1812 1 749 3725 64 0 0 chr1 21619046 21619517 -175575915 + L1_Mus1 LINE L1 6095 6565 -2 1 749 301 280 2 0 chr1 21625857 21625937 -175569495 - PB1D7 SINE Alu -1 119 36 1 750 1270 81 0 0 chr1 21626922 21627094 -175568338 - L1_Mus2 LINE L1 -771 5867 5696 1 750 5267 63 6 1 chr1 21627094 21627778 -175567654 + L1_Mus2 LINE L1 5880 6566 0 1 750 221 358 12 18 chr1 21628283 21628451 -175566981 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 1 750 212 315 129 39 chr1 21629024 21629179 -175566253 + MIRb SINE MIR 30 198 -70 1 750 44 0 0 0 chr1 21630043 21630087 -175565345 + AT_rich Low_complexity Low_complexity 1 44 0 1 750 211 161 15 46 chr1 21630099 21630164 -175565268 + (TAAA)n Simple_repeat Simple_repeat 4 66 0 1 750 24 53 0 0 chr1 21630166 21630204 -175565228 + AT_rich Low_complexity Low_complexity 1 38 0 1 750 219 192 19 0 chr1 21630237 21630289 -175565143 + (TTAA)n Simple_repeat Simple_repeat 4 56 0 1 750 430 273 20 10 chr1 21630321 21630421 -175565011 - RSINE1 SINE B4 -61 104 4 1 750 279 325 0 0 chr1 21630721 21630798 -175564634 + RMER30 DNA MER1_type 5 81 -121 1 750 27 0 0 0 chr1 21630798 21630825 -175564607 + AT_rich Low_complexity Low_complexity 1 27 0 1 750 989 117 7 0 chr1 21630826 21630971 -175564461 - B1_Mus1 SINE Alu -2 146 1 1 750 448 217 22 0 chr1 21630990 21631082 -175564350 + RMER30 DNA MER1_type 97 190 -12 1 750 1252 257 92 12 chr1 21631311 21631638 -175563794 + MTE2b LTR MaLR 16 368 -11 1 750 615 51 0 0 chr1 21631689 21631768 -175563664 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 750 474 108 0 0 chr1 21631869 21631943 -175563489 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 750 185 154 0 25 chr1 21631963 21632003 -175563429 + CT-rich Low_complexity Low_complexity 4 42 0 1 750 260 414 35 21 chr1 21632021 21632164 -175563268 - MIR SINE MIR -112 150 6 1 750 225 312 49 61 chr1 21632960 21633031 -175562401 - B1F1 SINE Alu -55 94 24 1 750 270 81 0 0 chr1 21633031 21633068 -175562364 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 750 5921 66 0 12 chr1 21634699 21635466 -175559966 - L1_Mus1 LINE L1 -4 6563 5806 1 750 4774 82 3 0 chr1 21635466 21636102 -175559330 + L1_Mus1 LINE L1 5144 5781 -102 1 750 4742 56 0 0 chr1 21637710 21638295 -175557137 - L1Md_T LINE L1 -1 6581 5997 1 750 222 286 157 0 chr1 21638566 21638636 -175556796 + L2c LINE L2 3252 3332 -55 1 750 381 184 98 39 chr1 21638761 21638863 -175556569 + RMER15 LTR ERVL 27 134 -441 1 750 882 227 84 0 chr1 21638879 21639104 -175556328 + RMER15 LTR ERVL 331 574 -1 1 750 783 293 62 4 chr1 21639735 21639992 -175555440 - B4A SINE B4 -18 274 3 1 750 899 249 10 5 chr1 21640060 21640262 -175555170 + B3 SINE B2 1 203 -13 1 750 273 57 0 0 chr1 21640397 21640432 -175555000 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 750 1023 310 45 35 chr1 21641396 21641794 -175553638 - MTD LTR MaLR -2 417 16 1 750 467 287 96 8 chr1 21642597 21642762 -175552670 + ORR1E LTR MaLR 1 183 -191 1 750 344 310 35 0 chr1 21642889 21643002 -175552430 + ORR1E LTR MaLR 246 362 -17 1 750 7740 64 22 1 chr1 21643006 21644346 -175551086 + L1_Mus1 LINE L1 5206 6564 -3 1 750 234 345 112 13 chr1 21644475 21644707 -175550725 - L2 LINE L2 -756 2663 2409 1 750 314 326 34 0 chr1 21644981 21645070 -175550362 + PB1D10 SINE Alu 1 92 -25 1 750 247 330 90 0 chr1 21644985 21645085 -175550347 + ID_B1 SINE B4 86 194 -30 1 750 248 299 83 9 chr1 21645531 21645639 -175549793 - L2 LINE L2 -2273 1146 1031 1 750 1245 205 41 45 chr1 21646451 21646742 -175548690 - ORR1C2 LTR MaLR 0 384 95 1 750 2494 99 32 0 chr1 21646777 21647122 -175548310 - L1_Mm LINE L1 -116 5767 5412 2 750 421 195 0 0 chr1 21647123 21647200 -175548232 - ORR1C2 LTR MaLR -307 77 1 1 750 3816 50 0 0 chr1 21647544 21648038 -175547394 - L1Md_F2 LINE L1 0 6582 6097 2 750 352 186 254 6 chr1 21648472 21648645 -175546787 - Lx9 LINE L1 -1 7643 7428 2 750 211 73 23 47 chr1 21648714 21648757 -175546675 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 2 750 592 329 113 22 chr1 21649189 21649693 -175545739 - HAL1 LINE L1 -1953 554 5 2 750 28 29 0 0 chr1 21650608 21650643 -175544789 + AT_rich Low_complexity Low_complexity 1 35 0 2 750 23 33 0 0 chr1 21651702 21651732 -175543700 + AT_rich Low_complexity Low_complexity 1 30 0 2 750 276 264 0 0 chr1 21651764 21651817 -175543615 + PB1D9 SINE Alu 2 54 -66 2 750 336 343 17 0 chr1 21651855 21652030 -175543402 + (TAGG)n Simple_repeat Simple_repeat 2 179 0 2 750 362 199 31 24 chr1 21652048 21652146 -175543286 + PB1D9 SINE Alu 42 149 0 2 750 306 376 37 8 chr1 21652648 21652782 -175542650 - ID_B1 SINE B4 -84 140 3 2 750 33 0 0 0 chr1 21655621 21655654 -175539778 + AT_rich Low_complexity Low_complexity 1 33 0 2 750 4361 72 0 0 chr1 21655654 21656211 -175539221 - L1_Mus1 LINE L1 0 6567 6011 2 750 1064 58 0 0 chr1 21656211 21656348 -175539084 + L1_Mus1 LINE L1 5831 5967 -600 2 750 242 260 51 64 chr1 21657265 21657343 -175538089 + MER81 DNA AcHobo 37 113 -1 2 750 633 286 147 38 chr1 21658039 21658493 -175536939 + L1MA8 LINE L1 5260 5780 -511 2 750 675 303 17 11 chr1 21658561 21658741 -175536691 + B4 SINE B4 112 292 0 2 750 362 299 76 71 chr1 21658758 21658989 -175536443 + L1MA8 LINE L1 5881 6124 -167 2 750 243 88 0 0 chr1 21658989 21659023 -175536409 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2 750 229 342 0 0 chr1 21659024 21659097 -175536335 - ID2 SINE ID -9 74 2 2 750 362 299 76 71 chr1 21659097 21659270 -175536162 + L1MA8 LINE L1 6125 6289 -2 2 750 228 374 18 31 chr1 21659275 21659438 -175535994 + RSINE1 SINE B4 4 164 -1 2 750 29 28 0 0 chr1 21659451 21659487 -175535945 + AT_rich Low_complexity Low_complexity 1 36 0 2 750 424 290 0 0 chr1 21659954 21660054 -175535378 + Lx8 LINE L1 6399 6498 -975 2 750 1529 320 45 16 chr1 21660157 21660764 -175534668 + Lx8 LINE L1 6653 7276 -197 2 750 890 46 27 64 chr1 21660790 21660977 -175534455 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 750 199 190 0 23 chr1 21661413 21661456 -175533976 - MIRc SINE MIR -113 155 114 2 750 23 0 0 0 chr1 21661850 21661873 -175533559 + AT_rich Low_complexity Low_complexity 1 23 0 2 750 307 314 185 6 chr1 21663393 21663550 -175531882 + MER20 DNA MER1_type 29 213 -6 2 750 1625 162 221 35 chr1 21663633 21664009 -175531423 + RLTR41 LTR ERV1 1 446 0 2 750 305 325 80 26 chr1 21664112 21664324 -175531108 + MuLV-int LTR ERV1 1360 1641 -5965 2 750 2111 89 6 54 chr1 21664353 21664687 -175530745 - L1_Mus2 LINE L1 0 6566 6249 2 750 949 59 0 0 chr1 21664687 21664805 -175530627 + L1_Mus2 LINE L1 6129 6246 -320 2 750 445 123 14 14 chr1 21664813 21664887 -175530545 + RLTR41 LTR ERV1 373 446 0 2 750 540 0 0 0 chr1 21664975 21665035 -175530397 + (CAGAA)n Simple_repeat Simple_repeat 2 61 0 2 750 221 256 16 0 chr1 21665384 21665514 -175529918 + CT-rich Low_complexity Low_complexity 1 132 0 2 750 364 316 0 20 chr1 21665520 21665620 -175529812 - B1F1 SINE Alu -51 98 1 2 750 39 60 0 0 chr1 21667310 21667377 -175528055 + AT_rich Low_complexity Low_complexity 1 67 0 2 750 2184 185 15 35 chr1 21667457 21667675 -175527757 - MTC LTR MaLR -21 400 197 2 750 2053 135 25 0 chr1 21667675 21668001 -175527431 - Lx2 LINE L1 -5 6992 6659 2 750 2184 181 15 35 chr1 21668001 21668198 -175527234 - MTC LTR MaLR -225 196 3 2 750 1146 147 22 0 chr1 21669999 21670183 -175525249 - B2_Mm2 SINE B2 -5 190 3 2 750 22 35 0 0 chr1 21670266 21670295 -175525137 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 2363 178 9 23 chr1 21670834 21671261 -175524171 + MTC LTR MaLR 1 421 0 2 750 364 228 45 12 chr1 21671797 21671898 -175523534 - MLT1A0 LTR MaLR 0 390 275 2 750 895 293 306 14 chr1 21672172 21672931 -175522501 + L1_Mur3 LINE L1 4785 5764 -116 2 750 442 219 175 73 chr1 21672929 21673175 -175522257 + Lx8 LINE L1 7203 7473 0 2 750 465 19 0 0 chr1 21673378 21673432 -175522000 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 750 1110 37 0 0 chr1 21673432 21673566 -175521866 - B1_Mm SINE Alu -12 135 2 2 750 266 290 203 4 chr1 21673859 21674115 -175521317 - Lx9 LINE L1 -29 7615 7309 2 750 1242 50 6 0 chr1 21675217 21675376 -175520056 + L1_Mus1 LINE L1 6408 6567 0 2 750 1219 179 88 35 chr1 21675437 21675698 -175519734 - Lx2 LINE L1 0 6997 6723 2 750 597 325 53 73 chr1 21677806 21678164 -175517268 - ORR1E LTR MaLR -4 355 5 2 750 690 163 0 0 chr1 21678645 21678786 -175516646 + CT-rich Low_complexity Low_complexity 2 142 0 2 750 424 342 0 0 chr1 21678788 21678908 -175516524 - PB1D9 SINE Alu 0 120 1 2 750 255 301 55 0 chr1 21679251 21679324 -175516108 + ID2 SINE ID 4 80 -3 2 750 185 294 0 9 chr1 21679603 21679713 -175515719 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 750 600 236 20 34 chr1 21679788 21679937 -175515495 + RSINE1 SINE B4 13 159 -6 2 750 614 201 21 76 chr1 21680655 21680800 -175514632 - B1_Mur1 SINE Alu -7 142 6 2 750 2082 92 13 58 chr1 21682242 21682552 -175512880 + L1_Mus3 LINE L1 6330 6796 -262 2 750 8994 4 0 0 chr1 21682552 21683548 -175511884 + L1Md_A LINE L1 5587 6582 0 2 750 2082 82 9 59 chr1 21683548 21683576 -175511856 + L1_Mus3 LINE L1 6613 6636 -2 2 750 343 93 0 0 chr1 21683684 21683738 -175511694 + L1_Mus3 LINE L1 6579 6632 -6 2 750 2768 61 0 0 chr1 21685075 21685420 -175510012 + L1Md_F3 LINE L1 5241 5585 -298 2 750 8002 44 2 4 chr1 21685421 21686420 -175509012 + L1Md_F3 LINE L1 5587 6583 -1 2 750 858 189 12 0 chr1 21686422 21686586 -175508846 - URR1B DNA MER1_type -3 222 57 2 750 222 372 66 0 chr1 21687624 21687745 -175507687 - L3 LINE CR1 -1118 3371 3243 2 750 311 257 41 68 chr1 21688517 21688663 -175506769 + L1MA10 LINE L1 6136 6277 -57 2 750 333 358 136 22 chr1 21689088 21689508 -175505924 + L2a LINE L2 2813 3289 -137 2 750 198 369 0 15 chr1 21689595 21689661 -175505771 + L2a LINE L2 3305 3369 -57 2 750 303 324 0 0 chr1 21690243 21690317 -175505115 + B1_Mur1 SINE Alu 60 133 -16 2 750 405 0 0 0 chr1 21690328 21690373 -175505059 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 750 209 235 111 16 chr1 21690534 21690655 -175504777 - MIRc SINE MIR -42 220 89 2 750 354 23 0 0 chr1 21690949 21690992 -175504440 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 750 398 309 186 58 chr1 21691004 21691262 -175504170 - B4A SINE B4 0 292 2 2 750 374 85 17 0 chr1 21692519 21692578 -175502854 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 750 367 316 58 39 chr1 21692887 21693094 -175502338 + MER99 DNA hAT? 33 243 -588 2 750 356 200 0 10 chr1 21693306 21693407 -175502025 + (CATATA)n Simple_repeat Simple_repeat 6 105 0 2 750 3168 58 0 0 chr1 21693524 21693919 -175501513 - L1_Mus1 LINE L1 -1 6566 6172 2 750 277 374 11 0 chr1 21694119 21694210 -175501222 + B3 SINE B2 104 195 -21 2 750 24 67 0 0 chr1 21694411 21694456 -175500976 + AT_rich Low_complexity Low_complexity 1 45 0 2 750 2432 59 0 0 chr1 21695709 21696016 -175499416 + L1_Mus2 LINE L1 6260 6566 0 2 750 199 356 9 47 chr1 21696414 21696520 -175498912 + MIRc SINE MIR 66 167 -95 2 750 1688 73 16 4 chr1 21696703 21696950 -175498482 + L1_Mus3 LINE L1 6389 6638 0 2 750 331 339 7 13 chr1 21697045 21697203 -175498229 + L1M5 LINE L1 5457 5609 -735 2 750 183 80 0 0 chr1 21697284 21697309 -175498123 + (A)n Simple_repeat Simple_repeat 1 25 0 2 750 3316 147 8 8 chr1 21697598 21698132 -175497300 - Lx2B LINE L1 -803 6197 5664 2 750 4263 136 70 34 chr1 21698134 21698905 -175496527 + Lx2B LINE L1 6184 6982 -18 2 750 25 65 0 0 chr1 21699325 21699371 -175496061 + AT_rich Low_complexity Low_complexity 1 46 0 2 750 694 72 4 0 chr1 21699375 21699482 -175495950 + B1_Mm SINE Alu 10 119 -1 2 750 676 268 40 35 chr1 21699515 21699716 -175495716 + B3 SINE B2 1 202 -14 2 750 183 184 0 0 chr1 21699743 21699781 -175495651 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2 750 243 0 0 0 chr1 21700252 21700279 -175495153 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2 750 441 277 126 40 chr1 21700307 21700585 -175494847 - Lx9 LINE L1 -27 7617 7316 2 750 1794 38 42 17 chr1 21700952 21701192 -175494240 - L1Md_F2 LINE L1 -13 6569 6324 2 750 465 19 0 0 chr1 21702738 21702792 -175492640 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 750 22 35 0 0 chr1 21703473 21703502 -175491930 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 230 296 83 21 chr1 21703696 21703841 -175491591 - RLTR22_Mur LTR ERVK -387 1461 1308 2 750 225 208 0 20 chr1 21704823 21704872 -175490560 + RMER21A LTR ERV1 637 684 -263 2 750 1076 75 14 7 chr1 21705040 21705187 -175490245 - B1_Mus1 SINE Alu 0 148 1 2 750 241 361 87 74 chr1 21706917 21707228 -175488204 + RLTR18 LTR ERVK 33 347 -269 2 750 304 200 0 0 chr1 21707549 21707604 -175487828 + B1_Mur4 SINE Alu 2 56 -94 2 750 411 249 72 12 chr1 21707604 21707771 -175487661 + (CAGG)n Simple_repeat Simple_repeat 3 179 0 2 750 1060 145 0 32 chr1 21707714 21707899 -175487533 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 2 750 499 198 20 30 chr1 21707902 21708001 -175487431 + B1_Mur4 SINE Alu 43 140 -10 2 750 1985 183 44 15 chr1 21708393 21708782 -175486650 + MTD LTR MaLR 1 400 -19 2 750 248 131 0 21 chr1 21709035 21709082 -175486350 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 750 642 260 22 33 chr1 21709085 21709268 -175486164 - B3A SINE B2 -16 182 2 2 750 3341 266 40 33 chr1 21709268 21710196 -175485236 + Lx6 LINE L1 6520 7453 -7 2 750 245 29 29 0 chr1 21710209 21710243 -175485189 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 750 399 202 0 0 chr1 21711616 21711700 -175483732 + CT-rich Low_complexity Low_complexity 3 86 0 2 750 487 55 43 21 chr1 21712722 21712815 -175482617 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 2 750 4399 38 4 0 chr1 21712944 21713473 -175481959 - L1Md_A LINE L1 0 6582 6052 3 750 194 329 68 27 chr1 21714383 21714530 -175480902 + MIRb SINE MIR 66 218 -50 3 750 1740 199 44 6 chr1 21714628 21714972 -175480460 + ORR1B2 LTR MaLR 3 359 -8 3 750 414 0 0 0 chr1 21715630 21715676 -175479756 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 750 222 37 0 0 chr1 21716769 21716796 -175478636 + (A)n Simple_repeat Simple_repeat 1 27 0 3 750 253 299 26 13 chr1 21718141 21718219 -175477213 + GA-rich Low_complexity Low_complexity 2 80 0 3 750 1815 200 8 63 chr1 21718230 21718451 -175476981 + ORR1C1 LTR MaLR 6 204 -174 3 750 4994 57 9 5 chr1 21718451 21719091 -175476341 + L1Md_F2 LINE L1 5940 6582 0 3 750 1815 200 8 63 chr1 21719091 21719264 -175476168 + ORR1C1 LTR MaLR 205 377 -1 3 750 21 0 0 0 chr1 21719987 21720008 -175475424 + AT_rich Low_complexity Low_complexity 1 21 0 3 750 384 22 0 0 chr1 21720606 21720651 -175474781 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 750 609 125 0 0 chr1 21720651 21720771 -175474661 + (GA)n Simple_repeat Simple_repeat 1 120 0 3 750 197 268 54 126 chr1 21721093 21721204 -175474228 - MIRm SINE MIR -125 151 49 3 750 4765 91 12 12 chr1 21721531 21722218 -175473214 - L1_Mus4 LINE L1 -7 6629 5943 3 750 1389 293 78 20 chr1 21722784 21723795 -175471637 + L1MA6 LINE L1 5065 6139 -161 3 750 349 309 88 42 chr1 21724423 21724686 -175470746 - L1MD2 LINE L1 -17 6342 6068 3 750 556 336 7 0 chr1 21726031 21726168 -175469264 - ID_B1 SINE B4 -64 160 23 3 750 342 257 193 44 chr1 21726872 21727100 -175468332 - Tigger6a DNA MER2_type -2 1081 820 3 750 261 200 57 0 chr1 21727861 21727931 -175467501 - Tigger6a DNA MER2_type -380 703 630 3 750 336 64 0 0 chr1 21727931 21727978 -175467454 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 750 459 323 35 22 chr1 21727978 21728206 -175467226 - Tigger6a DNA MER2_type -491 592 362 3 750 21 36 0 0 chr1 21728221 21728249 -175467183 + AT_rich Low_complexity Low_complexity 1 28 0 3 750 629 294 96 59 chr1 21728434 21728788 -175466644 - Tigger6a DNA MER2_type -688 395 29 3 750 239 105 90 26 chr1 21728788 21728866 -175466566 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 3 750 945 261 0 0 chr1 21728923 21729122 -175466310 + B3 SINE B2 1 199 -17 3 750 375 74 0 0 chr1 21729122 21729176 -175466256 + L1Md_F2 LINE L1 6517 6570 -12 3 750 558 0 0 0 chr1 21729345 21729407 -175466025 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 750 834 270 83 92 chr1 21729410 21729748 -175465684 - MER2 DNA MER2_type -10 335 1 3 750 717 45 0 0 chr1 21730213 21730302 -175465130 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 3 750 822 94 0 0 chr1 21730389 21730506 -175464926 + (GAGAA)n Simple_repeat Simple_repeat 5 121 0 3 750 230 193 0 17 chr1 21731166 21731224 -175464208 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 750 186 148 56 0 chr1 21731241 21731295 -175464137 + GA-rich Low_complexity Low_complexity 4 60 0 3 750 468 0 0 0 chr1 21731945 21731997 -175463435 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 750 386 286 118 17 chr1 21732397 21732575 -175462857 - MER63D DNA AcHobo -864 197 2 3 750 1800 193 53 105 chr1 21732673 21733041 -175462391 - RLTR31A_Mm LTR ERVK -4 557 222 3 750 482 93 0 34 chr1 21733041 21733130 -175462302 + L1Md_F3 LINE L1 6498 6583 -1 3 750 1800 155 32 75 chr1 21733130 21733352 -175462080 - RLTR31A_Mm LTR ERVK -310 251 1 3 750 3209 236 73 34 chr1 21733352 21734147 -175461285 - RMER3D-int LTR ERVK -2 2840 2042 3 750 1140 170 0 34 chr1 21734147 21734384 -175461048 - L1Md_F3 LINE L1 0 6584 6356 3 750 3209 236 73 34 chr1 21734384 21734663 -175460769 - RMER3D-int LTR ERVK -801 2041 1725 3 750 24 32 0 0 chr1 21735893 21735924 -175459508 + AT_rich Low_complexity Low_complexity 1 31 0 3 750 1146 296 17 40 chr1 21736688 21737108 -175458324 + Lx7 LINE L1 6922 7331 -142 3 750 261 0 0 0 chr1 21737108 21737137 -175458295 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 750 416 344 47 89 chr1 21737137 21737290 -175458142 + Lx7 LINE L1 7332 7471 -2 3 750 522 0 0 0 chr1 21737938 21737996 -175457436 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 750 284 346 6 54 chr1 21739451 21739619 -175455813 - MARNA DNA Mariner -336 250 91 3 750 378 352 120 0 chr1 21739752 21739894 -175455538 + RSINE1 SINE B4 5 163 -2 3 750 239 260 162 14 chr1 21739926 21740000 -175455432 + B1F SINE Alu 1 85 -64 3 750 235 291 75 69 chr1 21741987 21742175 -175453257 + MIRc SINE MIR 18 206 -62 3 750 624 203 27 47 chr1 21742767 21742917 -175452515 + B1_Mur4 SINE Alu 2 148 -2 3 750 211 161 36 0 chr1 21742983 21743039 -175452393 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 750 24 0 0 0 chr1 21743084 21743108 -175452324 + AT_rich Low_complexity Low_complexity 1 24 0 3 750 629 283 142 14 chr1 21743192 21743536 -175451896 - L1MA6 LINE L1 -175 6125 5738 3 750 227 342 25 49 chr1 21743899 21744062 -175451370 + RLTR22_Mur LTR ERVK 1306 1464 -384 3 750 323 246 72 36 chr1 21744063 21744202 -175451230 + L1MA7 LINE L1 6126 6269 -22 3 750 360 295 77 8 chr1 21744379 21744509 -175450923 + L1MEf LINE L1 629 767 -5433 3 750 2358 248 72 15 chr1 21745197 21745374 -175450058 - Lx6 LINE L1 -4 7456 7264 3 750 2137 41 4 4 chr1 21745374 21745642 -175449790 + L1Md_F2 LINE L1 6310 6577 -5 3 750 2358 248 72 15 chr1 21745642 21746073 -175449359 - Lx6 LINE L1 -197 7263 6813 3 750 527 351 22 22 chr1 21747660 21747887 -175447545 - B4 SINE B4 -63 229 3 3 750 22 0 0 0 chr1 21748015 21748037 -175447395 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 578 318 29 12 chr1 21748164 21748336 -175447096 + B3A SINE B2 6 180 -18 3 750 461 342 147 19 chr1 21748557 21748920 -175446512 - MER63B DNA AcHobo -2 434 26 3 750 655 87 0 0 chr1 21749336 21749440 -175445992 + L1Md_F2 LINE L1 6475 6578 -4 3 750 229 275 47 106 chr1 21749528 21749784 -175445648 + RLTR21 LTR ERVK 1013 1253 -319 3 750 318 50 0 0 chr1 21749856 21749896 -175445536 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 750 815 290 38 0 chr1 21750025 21750318 -175445114 + L1M3 LINE L1 4000 4303 -1837 3 750 180 214 64 106 chr1 21751162 21751256 -175444176 - L3 LINE CR1 -278 4211 4122 3 750 4259 100 30 13 chr1 21752396 21753025 -175442407 - L1_Mus2 LINE L1 0 6566 5927 3 750 8392 144 37 58 chr1 21753032 21755355 -175440077 - L1Md_F LINE L1 -3277 2606 331 3 750 183 42 0 0 chr1 21755759 21755783 -175439649 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 750 244 321 71 28 chr1 21755931 21756072 -175439360 - MER20 DNA MER1_type -2 217 71 3 750 538 319 34 5 chr1 21757157 21757365 -175438067 + B3 SINE B2 3 216 0 3 750 498 71 36 0 chr1 21757468 21757552 -175437880 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 750 1711 119 10 78 chr1 21757570 21757879 -175437553 - ORR1A1 LTR MaLR -8 338 51 3 93 1627 74 12 40 chr1 21757866 21758119 -175437313 - ORR1A1-int LTR MaLR -1546 246 1 3 751 2254 86 60 21 chr1 21758119 21758452 -175436980 - ORR1A1 LTR MaLR 0 346 1 3 751 306 67 0 0 chr1 21758591 21758636 -175436796 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 751 515 16 16 0 chr1 21758676 21758740 -175436692 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 751 5282 68 1 1 chr1 21758880 21759570 -175435862 + L1Md_F2 LINE L1 4897 5586 -297 3 751 6681 79 58 3 chr1 21759571 21760549 -175434883 + L1Md_F2 LINE L1 5588 6582 0 3 751 296 331 81 20 chr1 21761572 21761745 -175433687 - L2a LINE L2 -40 3386 3193 3 751 324 0 0 0 chr1 21761771 21761807 -175433625 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 751 203 349 31 16 chr1 21762079 21762207 -175433225 + MIRc SINE MIR 136 265 -3 3 751 306 194 0 0 chr1 21762572 21762644 -175432788 + GA-rich Low_complexity Low_complexity 1 72 0 3 751 24 32 0 0 chr1 21762946 21762977 -175432455 + AT_rich Low_complexity Low_complexity 1 31 0 3 751 447 19 0 0 chr1 21763543 21763595 -175431837 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 751 247 323 31 51 chr1 21764879 21764977 -175430455 - PB1D10 SINE Alu -53 96 1 3 751 185 232 86 35 chr1 21765194 21765252 -175430180 - L4 LINE RTE -473 1556 1496 3 751 23 0 0 0 chr1 21767598 21767621 -175427811 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 28 48 0 0 chr1 21767964 21768006 -175427426 + AT_rich Low_complexity Low_complexity 1 42 0 3 751 923 85 7 84 chr1 21769290 21769444 -175425988 + B1_Mus1 SINE Alu 7 148 0 3 751 237 98 0 0 chr1 21769446 21769487 -175425945 + (A)n Simple_repeat Simple_repeat 1 41 0 3 751 234 0 0 0 chr1 21769558 21769584 -175425848 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 751 798 31 0 0 chr1 21769584 21769680 -175425752 + (GA)n Simple_repeat Simple_repeat 1 97 0 3 751 602 299 0 0 chr1 21769728 21769862 -175425570 - RSINE1 SINE B4 -30 135 2 3 751 474 297 68 127 chr1 21771814 21772122 -175423310 + B4A SINE B4 2 291 -1 3 751 185 154 26 0 chr1 21772128 21772167 -175423265 + (ATG)n Simple_repeat Simple_repeat 2 41 0 3 751 468 91 0 0 chr1 21772644 21772710 -175422722 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 751 286 282 52 43 chr1 21772893 21773008 -175422424 - MIRb SINE MIR -78 190 75 3 751 306 0 0 0 chr1 21773704 21773738 -175421694 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 751 10674 116 2 2 chr1 21774399 21776055 -175419377 + L1_Mus2 LINE L1 1234 2889 -2994 3 751 7001 103 26 2 chr1 21776031 21777505 -175417927 + L1_Mus2 LINE L1 5049 6566 0 3 751 3060 124 4 34 chr1 21778092 21778600 -175416832 - Lx LINE L1 -6 6648 6156 3 751 661 283 30 6 chr1 21778634 21778801 -175416631 - B3A SINE B2 -18 180 10 3 751 223 342 13 13 chr1 21778733 21778810 -175416622 - RSINE1 SINE B4 -87 78 2 3 751 1863 213 34 15 chr1 21778954 21779363 -175416069 + Lx7 LINE L1 5331 5747 -133 3 751 1218 194 4 63 chr1 21779363 21779632 -175415800 - MTC LTR MaLR 0 421 169 3 751 609 204 52 23 chr1 21779678 21779819 -175415613 - MT2A LTR ERVL -450 134 1 3 751 1501 193 67 69 chr1 21779819 21780281 -175415151 + Lx7 LINE L1 5746 6206 -1490 3 751 6059 56 4 4 chr1 21780274 21781023 -175414409 + L1Md_F2 LINE L1 5813 6559 -23 3 751 189 0 0 0 chr1 21781023 21781044 -175414388 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 751 6059 56 4 4 chr1 21781044 21781063 -175414369 + L1Md_F2 LINE L1 6560 6581 -1 3 751 4966 226 22 32 chr1 21781055 21782190 -175413242 + Lx7 LINE L1 6200 7323 -373 3 751 315 0 0 0 chr1 21782959 21782994 -175412438 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 3 751 303 284 72 36 chr1 21784056 21784195 -175411237 + RMER15 LTR ERVL 275 418 -157 3 751 819 273 74 72 chr1 21785944 21786528 -175408904 - L1MA4 LINE L1 -370 5930 5346 4 751 2732 68 16 11 chr1 21787328 21787700 -175407732 + L1Md_F2 LINE L1 6206 6579 -3 4 751 457 279 174 37 chr1 21788469 21788767 -175406665 + MLT2C1 LTR ERVL 33 371 -26 4 751 264 281 87 40 chr1 21790461 21790587 -175404845 + B1F SINE Alu 2 133 -16 4 751 378 0 0 0 chr1 21790600 21790642 -175404790 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 751 1742 253 42 23 chr1 21792199 21792680 -175402752 + Lx6 LINE L1 6945 7434 -26 4 751 180 0 0 0 chr1 21792919 21792939 -175402493 + (CCA)n Simple_repeat Simple_repeat 3 22 0 4 751 22 35 0 0 chr1 21792971 21793000 -175402432 + AT_rich Low_complexity Low_complexity 1 29 0 4 751 347 286 50 7 chr1 21793179 21793320 -175402112 - RSINE1 SINE B4 -8 157 11 4 751 210 234 0 0 chr1 21794311 21794358 -175401074 + MIRb SINE MIR 190 236 -32 4 751 770 304 99 78 chr1 21794619 21795032 -175400400 - MER20B DNA MER1_type -149 634 213 4 751 908 304 12 17 chr1 21795163 21795468 -175399964 - MTE2b LTR MaLR -52 327 34 4 751 1961 267 20 68 chr1 21795779 21795976 -175399456 + Lx9 LINE L1 6808 7000 -644 4 751 528 256 220 0 chr1 21795976 21796144 -175399288 + B3 SINE B2 3 207 -9 4 751 1961 267 20 68 chr1 21796144 21796594 -175398838 + Lx9 LINE L1 7001 7424 -220 4 751 318 50 0 0 chr1 21796945 21796985 -175398447 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 4 751 207 372 117 7 chr1 21798300 21798454 -175396978 - MER5B DNA MER1_type -1 177 7 4 751 254 282 13 13 chr1 21799168 21799247 -175396185 + MamRep605 Unknown Unknown 220 298 -578 4 751 841 272 9 5 chr1 21799998 21800212 -175395220 - B3 SINE B2 0 216 2 4 751 771 302 55 43 chr1 21800889 21801145 -175394287 - B4A SINE B4 -18 274 16 4 751 189 0 0 0 chr1 21802130 21802151 -175393281 + (T)n Simple_repeat Simple_repeat 1 21 0 4 751 318 304 39 19 chr1 21803656 21803760 -175391672 - B4A SINE B4 -148 144 39 4 751 258 177 37 37 chr1 21803793 21803875 -175391557 - Lx9 LINE L1 -20 7624 7543 4 751 492 32 0 0 chr1 21803879 21803941 -175391491 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 751 32 26 0 0 chr1 21804141 21804180 -175391252 + AT_rich Low_complexity Low_complexity 1 39 0 4 751 1098 196 61 11 chr1 21804243 21804506 -175390926 + Lx9 LINE L1 7176 7451 -193 4 751 1871 120 3 0 chr1 21804710 21804994 -175390438 + Lx LINE L1 6370 6654 0 4 751 307 281 80 11 chr1 21806336 21806465 -175388967 + B4 SINE B4 1 143 -149 4 751 2104 139 41 108 chr1 21806477 21806960 -175388472 - RLTR11B LTR ERVK -1 452 2 4 751 2069 160 74 0 chr1 21807689 21808052 -175387380 - ORR1B1 LTR MaLR 0 394 5 4 751 192 294 174 14 chr1 21808071 21808140 -175387292 + MIRb SINE MIR 36 115 -153 4 751 26 30 0 0 chr1 21808196 21808229 -175387203 + AT_rich Low_complexity Low_complexity 1 33 0 4 751 218 119 48 0 chr1 21808495 21808537 -175386895 + (CCTG)n Simple_repeat Simple_repeat 2 45 0 4 751 225 0 0 0 chr1 21809092 21809117 -175386315 + (T)n Simple_repeat Simple_repeat 1 25 0 4 751 334 259 68 43 chr1 21810383 21810500 -175384932 + MIR3 SINE MIR 87 206 -2 4 751 4439 201 10 2 chr1 21811768 21812599 -175382833 + Lx5 LINE L1 6214 7050 0 4 751 731 71 16 0 chr1 21812672 21812798 -175382634 + RMER17A2 LTR ERVK 383 510 -396 4 751 585 0 0 0 chr1 21812903 21812968 -175382464 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 4 751 366 253 88 53 chr1 21812972 21813143 -175382289 - Lx8 LINE L1 -9 7464 7288 4 751 388 270 81 105 chr1 21813201 21813697 -175381735 - L1M4 LINE L1 -782 5364 4881 4 751 213 356 49 10 chr1 21814840 21814942 -175380490 + L2 LINE L2 2668 2773 -646 4 751 351 316 49 49 chr1 21816852 21816995 -175378437 - ID_B1 SINE B4 0 224 82 4 751 679 265 19 10 chr1 21817530 21817736 -175377696 - B3 SINE B2 -6 210 3 4 751 796 290 34 57 chr1 21818007 21818303 -175377129 - B4 SINE B4 0 292 4 4 751 237 33 0 0 chr1 21818427 21818457 -175376975 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 751 482 319 23 81 chr1 21818561 21818735 -175376697 - B4A SINE B4 -118 174 11 4 751 186 43 0 0 chr1 21818975 21818998 -175376434 + (T)n Simple_repeat Simple_repeat 1 23 0 4 751 200 114 44 22 chr1 21821774 21821819 -175373613 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 4 751 588 307 119 25 chr1 21821884 21822438 -175372994 + L1M2 LINE L1 3725 4330 -1813 4 751 207 69 0 0 chr1 21822593 21822622 -175372810 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 751 444 99 0 0 chr1 21822622 21822693 -175372739 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 751 603 196 9 0 chr1 21822837 21822944 -175372488 + PB1D9 SINE Alu 12 119 -1 4 751 726 280 155 42 chr1 21823440 21823771 -175371661 + MTD LTR MaLR 9 405 -14 4 751 816 3 26 76 chr1 21824175 21824477 -175370955 + (TCTCCC)n Simple_repeat Simple_repeat 1 286 0 4 751 538 255 76 105 chr1 21824737 21824908 -175370524 + B3 SINE B2 1 166 -50 4 751 414 0 0 0 chr1 21824908 21824954 -175370478 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 751 22 0 0 0 chr1 21826133 21826155 -175369277 + AT_rich Low_complexity Low_complexity 1 22 0 4 751 311 274 78 26 chr1 21826485 21826601 -175368831 - AmnSINE1 SINE SINE -208 367 246 4 751 344 277 21 11 chr1 21827133 21827228 -175368204 - MER5A1 DNA MER1_type -2 164 69 4 751 444 37 0 0 chr1 21827394 21827448 -175367984 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 751 1576 201 41 49 chr1 21827685 21828072 -175367360 - ORR1C2 LTR MaLR 0 384 1 4 751 437 312 155 30 chr1 21829111 21829375 -175366057 + MLT1C LTR MaLR 1 297 -170 4 751 459 209 0 0 chr1 21829381 21829491 -175365941 + (TG)n Simple_repeat Simple_repeat 1 110 0 4 751 387 328 36 22 chr1 21829570 21829707 -175365725 + Lx8 LINE L1 7185 7323 -150 4 751 3353 72 0 2 chr1 21830262 21830697 -175364735 + L1Md_F2 LINE L1 6134 6567 -15 4 751 1188 61 0 0 chr1 21830728 21830875 -175364557 + B1_Mus2 SINE Alu 1 147 0 4 751 530 168 19 0 chr1 21830875 21830982 -175364450 + A-rich Low_complexity Low_complexity 2 110 0 4 751 24 0 0 0 chr1 21831097 21831121 -175364311 + AT_rich Low_complexity Low_complexity 1 24 0 4 751 450 368 0 0 chr1 21831132 21831276 -175364156 - ID_B1 SINE B4 0 224 81 4 751 584 176 7 0 chr1 21831361 21831497 -175363935 + CT-rich Low_complexity Low_complexity 3 139 0 4 751 24 0 0 0 chr1 21831645 21831669 -175363763 + AT_rich Low_complexity Low_complexity 1 24 0 4 751 377 299 181 0 chr1 21831674 21831748 -175363684 + L1Md_F2 LINE L1 6368 6452 -548 4 751 2636 25 9 0 chr1 21831748 21832063 -175363369 - L1Md_F2 LINE L1 -1 6581 6264 4 751 1153 43 0 0 chr1 21832063 21832192 -175363240 + L1Md_F2 LINE L1 6139 6267 -315 4 751 26 64 0 0 chr1 21833201 21833248 -175362184 + AT_rich Low_complexity Low_complexity 1 47 0 4 751 470 146 10 0 chr1 21833933 21834029 -175361403 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 751 231 234 0 0 chr1 21834535 21834582 -175360850 + ID4 SINE ID 10 56 -27 4 751 321 203 193 86 chr1 21834786 21834926 -175360506 - B2_Mm2 SINE B2 -40 155 1 4 751 827 142 223 27 chr1 21835057 21835245 -175360187 - URR1A DNA MER1_type 0 226 2 4 751 765 200 34 7 chr1 21835744 21835890 -175359542 - B1_Mur4 SINE Alu 0 150 1 4 751 706 300 102 8 chr1 21837600 21837865 -175357567 + B4 SINE B4 3 292 0 4 751 526 320 75 1 chr1 21837912 21838169 -175357263 - L1MC1 LINE L1 -6 6338 6062 4 751 490 231 61 0 chr1 21838186 21838333 -175357099 - L1MC1 LINE L1 -345 5999 5844 4 751 47 19 0 0 chr1 21839072 21839126 -175356306 + AT_rich Low_complexity Low_complexity 1 54 0 4 751 1005 256 63 98 chr1 21839244 21839573 -175355859 - Lx9 LINE L1 -213 7431 7127 4 751 1139 68 7 0 chr1 21839573 21839719 -175355713 - B1_Mus1 SINE Alu 0 148 2 4 751 1005 256 63 98 chr1 21839719 21839879 -175355553 - Lx9 LINE L1 -518 7126 6959 4 751 621 316 65 86 chr1 21839888 21840285 -175355147 + MTE2a LTR MaLR 24 407 -14 4 751 232 219 141 0 chr1 21841228 21841292 -175354140 - L1M5 LINE L1 -316 5808 5736 4 751 309 26 0 0 chr1 21841929 21841967 -175353465 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 751 459 0 0 0 chr1 21842064 21842115 -175353317 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 751 22 88 0 0 chr1 21842772 21842829 -175352603 + AT_rich Low_complexity Low_complexity 1 57 0 4 751 201 272 72 24 chr1 21843682 21843765 -175351667 + L2 LINE L2 1211 1297 -2122 4 751 1296 217 87 31 chr1 21844039 21844395 -175351037 + Lx9 LINE L1 6515 6890 -754 4 751 352 97 0 31 chr1 21845529 21845593 -175349839 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 751 414 347 103 37 chr1 21845640 21845912 -175349520 - B4A SINE B4 -2 290 1 4 751 21 0 0 0 chr1 21846264 21846285 -175349147 + AT_rich Low_complexity Low_complexity 1 21 0 4 751 846 134 7 22 chr1 21847919 21848056 -175347376 - B1_Mur4 SINE Alu 0 150 16 4 751 645 200 143 0 chr1 21848057 21848197 -175347235 - B3 SINE B2 -56 160 1 4 751 422 263 70 16 chr1 21848226 21848431 -175347001 - L1MA9 LINE L1 -1060 5384 5161 4 751 674 307 112 8 chr1 21848429 21848823 -175346609 + L1MA9 LINE L1 5406 5840 -472 4 751 245 232 125 68 chr1 21848896 21848984 -175346448 + RSINE1 SINE B4 2 94 -71 4 751 210 118 0 0 chr1 21849008 21849042 -175346390 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 4 751 894 122 0 0 chr1 21849055 21849194 -175346238 + (GGGA)n Simple_repeat Simple_repeat 4 142 0 4 751 575 274 93 13 chr1 21849226 21849536 -175345896 + L1MA9 LINE L1 5953 6287 -4 4 751 228 111 0 0 chr1 21849786 21849822 -175345610 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 751 1113 59 0 0 chr1 21850133 21850268 -175345164 + B1_Mm SINE Alu 2 136 -11 4 751 207 0 0 0 chr1 21850268 21850291 -175345141 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 751 283 311 44 11 chr1 21850657 21850748 -175344684 - B4A SINE B4 -197 95 2 5 751 230 270 133 16 chr1 21851470 21851658 -175343774 - L1MA6 LINE L1 -1 6299 6090 5 751 837 279 107 14 chr1 21851677 21851968 -175343464 - ORR1D1 LTR MaLR -54 320 3 5 751 558 41 0 0 chr1 21851970 21852043 -175343389 + (TTTTC)n Simple_repeat Simple_repeat 3 75 0 5 751 837 251 143 4 chr1 21852069 21852345 -175343087 + Lx3C LINE L1 6663 7058 0 5 751 528 122 0 0 chr1 21852944 21853026 -175342406 + (GGGGA)n Simple_repeat Simple_repeat 4 85 0 5 751 234 253 40 0 chr1 21853310 21853385 -175342047 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 751 214 293 0 0 chr1 21853394 21853452 -175341980 - BC1_Mm scRNA scRNA -23 60 3 5 751 342 0 0 0 chr1 21853779 21853817 -175341615 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 751 1259 37 0 41 chr1 21854084 21854341 -175341091 - L1_Mus1 LINE L1 0 6567 6401 5 751 363 322 114 39 chr1 21854593 21854965 -175340467 - MLT1D LTR MaLR -61 444 2 5 751 246 340 60 48 chr1 21855440 21855607 -175339825 - MIRb SINE MIR -38 230 62 5 751 523 270 184 0 chr1 21855771 21855945 -175339487 - B3 SINE B2 -10 206 1 5 751 533 295 30 26 chr1 21856146 21856317 -175339115 - B3 SINE B2 0 216 45 5 751 553 173 0 28 chr1 21856815 21856958 -175338474 + GA-rich Low_complexity Low_complexity 4 142 0 5 751 251 315 93 59 chr1 21857785 21857903 -175337529 - B1F SINE Alu -8 141 20 5 751 615 75 0 0 chr1 21859165 21859259 -175336173 + (GA)n Simple_repeat Simple_repeat 2 95 0 5 751 716 246 32 60 chr1 21859412 21859628 -175335804 + B3 SINE B2 1 210 -6 5 751 2573 220 30 27 chr1 21860083 21860647 -175334785 + Lx5 LINE L1 6482 7047 -3 5 751 216 167 0 40 chr1 21861873 21861923 -175333509 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 5 751 251 286 29 0 chr1 21861941 21862011 -175333421 - ID4_ SINE ID -9 74 3 5 751 1106 74 0 7 chr1 21862256 21862405 -175333027 + B1_Mus1 SINE Alu 1 148 0 5 751 2451 135 78 14 chr1 21863152 21863263 -175332169 + Lx3A LINE L1 6465 6575 -406 5 751 6294 40 1 1 chr1 21863263 21864033 -175331399 - L1Md_F2 LINE L1 0 6582 5813 5 751 2451 135 78 14 chr1 21864033 21864334 -175331098 + Lx3A LINE L1 6576 6903 -78 5 751 182 91 0 29 chr1 21864344 21864378 -175331054 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 751 336 274 41 21 chr1 21866065 21866162 -175329270 + RSINE1 SINE B4 23 121 -44 5 751 198 0 0 0 chr1 21866325 21866347 -175329085 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 751 725 164 0 45 chr1 21866365 21866499 -175328933 - B2_Mm2 SINE B2 -66 129 2 5 751 281 295 90 58 chr1 21866708 21866931 -175328501 - L2a LINE L2 0 3426 3197 5 751 528 318 43 54 chr1 21867522 21867708 -175327724 - B3 SINE B2 -27 189 6 5 751 7064 79 3 8 chr1 21867814 21869325 -175326107 - L1_Mus2 LINE L1 -182 6384 4882 5 751 6360 81 10 2 chr1 21869296 21870177 -175325255 + L1_Mus2 LINE L1 3977 4864 -1019 5 751 187 336 93 0 chr1 21870339 21870446 -175324986 - L2a LINE L2 0 3426 3310 5 751 656 286 13 44 chr1 21871163 21871390 -175324042 - MLT1B LTR MaLR -4 386 167 5 751 1537 266 129 15 chr1 21871984 21872457 -175322975 - RMER15 LTR ERVL -27 548 22 5 751 22 0 0 0 chr1 21873158 21873180 -175322252 + AT_rich Low_complexity Low_complexity 1 22 0 5 751 1238 238 23 4 chr1 21873430 21873696 -175321736 + Lx7 LINE L1 6183 6453 -1243 5 751 515 105 44 15 chr1 21874235 21874370 -175321062 + (CAGAGA)n Simple_repeat Simple_repeat 2 140 0 5 751 183 80 0 0 chr1 21874961 21874986 -175320446 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 5 751 497 285 31 0 chr1 21874989 21875119 -175320313 - B1_Mur1 SINE Alu -13 136 3 5 751 369 0 0 0 chr1 21875315 21875356 -175320076 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 751 1019 259 59 10 chr1 21875411 21875719 -175319713 + Lx6 LINE L1 6455 6874 -586 5 751 2482 75 0 12 chr1 21875743 21876078 -175319354 - L1_Mus2 LINE L1 -59 6507 6177 5 751 1152 260 28 60 chr1 21876074 21876197 -175319235 + Lx6 LINE L1 7141 7256 -204 5 751 1098 82 0 0 chr1 21876197 21876343 -175319089 - B1_Mus1 SINE Alu -2 146 1 5 751 1152 260 28 60 chr1 21876343 21876538 -175318894 + Lx6 LINE L1 7257 7449 -11 5 751 703 211 72 106 chr1 21877005 21877185 -175318247 + B3A SINE B2 8 181 -14 5 751 239 266 12 37 chr1 21877370 21877452 -175317980 - ID2 SINE ID -1 82 3 5 751 25 0 0 0 chr1 21877498 21877523 -175317909 + AT_rich Low_complexity Low_complexity 1 25 0 5 751 22 56 0 0 chr1 21877638 21877674 -175317758 + AT_rich Low_complexity Low_complexity 1 36 0 5 751 219 36 0 0 chr1 21878379 21878407 -175317025 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 751 1221 246 58 33 chr1 21879210 21879571 -175315861 - ORR1D2 LTR MaLR 0 370 1 5 751 531 318 6 13 chr1 21879665 21879821 -175315611 - RSINE1 SINE B4 0 165 11 5 751 234 0 0 0 chr1 21880206 21880232 -175315200 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 751 405 0 0 0 chr1 21881340 21881385 -175314047 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 751 442 310 7 78 chr1 21883318 21883472 -175311960 - B4 SINE B4 -101 191 49 5 751 246 105 0 0 chr1 21884292 21884330 -175311102 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 751 255 390 51 0 chr1 21884696 21884814 -175310618 + PB1 SINE Alu 1 124 -3 5 751 199 333 80 37 chr1 21886379 21886541 -175308891 - MIRc SINE MIR -72 196 28 5 751 630 336 53 27 chr1 21887184 21887447 -175307985 + B4A SINE B4 22 291 -1 5 751 215 159 0 22 chr1 21887814 21887859 -175307573 + T-rich Low_complexity Low_complexity 2 45 0 5 751 422 197 32 63 chr1 21888333 21888459 -175306973 - Lx7 LINE L1 0 7696 7589 5 751 342 0 0 0 chr1 21888477 21888515 -175306917 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 751 882 57 145 0 chr1 21888639 21888763 -175306669 + B1_Mm SINE Alu 5 146 -1 5 751 683 121 0 17 chr1 21888766 21888884 -175306548 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 5 752 5514 86 11 87 chr1 21889121 21890036 -175305396 + MTA_Mm-int LTR MaLR 254 1098 0 5 752 3268 38 2 8 chr1 21890051 21890449 -175304983 + MTA_Mm LTR MaLR 1 396 0 5 752 1323 312 46 21 chr1 21891962 21892482 -175302950 - Lx8 LINE L1 -16 7457 6925 5 752 1679 274 51 21 chr1 21892470 21892939 -175302493 + Lx8 LINE L1 6443 6925 -548 5 752 27 0 0 0 chr1 21893062 21893089 -175302343 + AT_rich Low_complexity Low_complexity 1 27 0 5 752 474 354 79 47 chr1 21893456 21893773 -175301659 + ORR1E LTR MaLR 33 359 0 5 752 1032 253 31 35 chr1 21893980 21894299 -175301133 - Lx8 LINE L1 -519 6954 6637 5 752 884 288 117 0 chr1 21894283 21894564 -175300868 + Lx8 LINE L1 6967 7280 -193 5 752 2336 4 86 0 chr1 21894603 21894872 -175300560 + RLTR10B LTR ERVK 1 292 0 5 752 259 353 9 47 chr1 21895802 21895909 -175299523 + PB1D10 SINE Alu 5 107 -10 5 752 469 226 157 0 chr1 21896203 21896318 -175299114 - B1_Mus1 SINE Alu -7 141 9 5 752 284 244 12 82 chr1 21896245 21896330 -175299102 - MT2B LTR ERVL -363 238 160 5 752 400 273 90 30 chr1 21896356 21896556 -175298876 + Lx6 LINE L1 7223 7434 -26 5 752 295 342 82 62 chr1 21896960 21897203 -175298229 + L2b LINE L2 3127 3374 -1 5 752 347 141 16 0 chr1 21897541 21897605 -175297827 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 752 231 271 0 0 chr1 21897878 21897937 -175297495 + GA-rich Low_complexity Low_complexity 2 60 0 5 752 625 250 93 10 chr1 21898244 21898438 -175296994 + B3 SINE B2 1 210 -6 5 752 284 307 56 11 chr1 21898598 21898687 -175296745 + MLT1A LTR MaLR 10 102 -263 5 752 524 311 96 22 chr1 21898747 21899017 -175296415 - B4A SINE B4 0 292 3 5 752 362 346 62 62 chr1 21899019 21899262 -175296170 + MLT1A LTR MaLR 95 337 -37 5 752 596 200 9 0 chr1 21899406 21899516 -175295916 + MTD LTR MaLR 92 202 -219 5 752 807 309 69 16 chr1 21899518 21899824 -175295608 + Lx6 LINE L1 7137 7458 -2 5 752 275 177 16 0 chr1 21899846 21899908 -175295524 + GA-rich Low_complexity Low_complexity 1 63 0 5 752 654 266 100 5 chr1 21899919 21900119 -175295313 + MTD LTR MaLR 187 405 -14 5 752 961 296 76 23 chr1 21900228 21900571 -175294861 + MTEa LTR MaLR 16 376 -3 5 752 2174 153 19 0 chr1 21901304 21901664 -175293768 + ORR1B2 LTR MaLR 1 367 0 5 752 435 38 0 0 chr1 21902085 21902138 -175293294 + (CATTA)n Simple_repeat Simple_repeat 1 53 0 5 752 207 0 0 0 chr1 21902385 21902408 -175293024 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 752 528 16 0 0 chr1 21902408 21902468 -175292964 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 752 737 293 9 46 chr1 21903153 21903371 -175292061 + B3 SINE B2 1 210 -6 5 752 1998 163 70 16 chr1 21903652 21904038 -175291394 + MTB_Mm LTR MaLR 1 407 0 5 752 280 274 121 99 chr1 21904820 21905185 -175290247 + L1MB8 LINE L1 5743 6115 -63 5 752 490 317 96 64 chr1 21905198 21905478 -175289954 - B4A SINE B4 0 292 4 5 752 297 0 0 0 chr1 21905488 21905521 -175289911 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 752 357 165 0 0 chr1 21905522 21905619 -175289813 + GA-rich Low_complexity Low_complexity 2 98 0 5 752 335 115 33 0 chr1 21905829 21905890 -175289542 + (GAAAA)n Simple_repeat Simple_repeat 2 64 0 5 752 32 43 0 0 chr1 21906288 21906334 -175289098 + AT_rich Low_complexity Low_complexity 1 46 0 5 752 342 277 30 8 chr1 21906560 21906691 -175288741 + HAL1-2a_MD LINE L1 2394 2527 -497 5 752 264 137 0 0 chr1 21907826 21907877 -175287555 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 5 752 222 271 0 17 chr1 21908291 21908351 -175287081 + B4 SINE B4 28 86 -206 5 752 276 200 0 57 chr1 21908299 21908352 -175287080 + ID4_ SINE ID 34 83 0 5 752 202 230 0 65 chr1 21908352 21908445 -175286987 + A-rich Low_complexity Low_complexity 3 89 0 5 752 373 193 132 0 chr1 21908669 21908752 -175286680 + PB1D10 SINE Alu 16 109 -8 5 752 500 293 71 26 chr1 21910906 21911060 -175284372 + Lx8 LINE L1 7165 7325 -148 6 752 589 267 25 62 chr1 21911532 21911692 -175283740 + RSINE1 SINE B4 2 155 -10 6 752 634 188 331 0 chr1 21912553 21912707 -175282725 - B3 SINE B2 -11 205 1 6 752 254 284 71 36 chr1 21913487 21913571 -175281861 + MLT1A LTR MaLR 179 265 -109 6 752 370 335 95 63 chr1 21913597 21913849 -175281583 + MLT1A LTR MaLR 115 374 0 6 752 685 268 20 15 chr1 21913972 21914169 -175281263 + B3A SINE B2 1 198 0 6 752 640 250 0 46 chr1 21914220 21914371 -175281061 - B1_Mur3 SINE Alu -5 144 1 6 752 306 0 0 0 chr1 21914448 21914482 -175280950 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 752 357 24 0 0 chr1 21914493 21914535 -175280897 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 752 303 262 122 0 chr1 21915245 21915352 -175280080 - L1MA4A LINE L1 -367 5936 5817 6 752 4217 77 2 4 chr1 21915476 21916038 -175279394 - L1Md_F2 LINE L1 -5 6577 6017 6 752 315 210 198 16 chr1 21917047 21917168 -175278264 + Lx4B LINE L1 6910 7052 -6 6 752 261 241 35 0 chr1 21917309 21917367 -175278065 - Arthur1C DNA Tip100 -294 69 10 6 752 2058 91 94 0 chr1 21917578 21917897 -175277535 - L1_Mus3 LINE L1 -6 6632 6284 6 752 207 65 43 21 chr1 21918314 21918361 -175277071 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 6 752 688 275 39 39 chr1 21919415 21919623 -175275809 + B3 SINE B2 2 209 -7 6 752 294 19 94 0 chr1 21920429 21920482 -175274950 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 6 752 25 0 0 0 chr1 21920750 21920775 -175274657 + AT_rich Low_complexity Low_complexity 1 25 0 6 752 798 276 68 44 chr1 21921506 21921980 -175273452 + L1MA5 LINE L1 4824 5308 -835 6 752 440 219 211 36 chr1 21921989 21922155 -175273277 - ORR1D1 LTR MaLR 0 374 180 6 752 922 289 87 70 chr1 21922463 21923062 -175272370 + L1MA5 LINE L1 5352 5960 -340 6 752 189 107 0 0 chr1 21923156 21923184 -175272248 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 752 252 0 0 0 chr1 21923222 21923250 -175272182 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 752 399 301 35 46 chr1 21923250 21923535 -175271897 + L1MA5 LINE L1 6012 6295 -2 6 752 255 298 119 16 chr1 21923647 21923773 -175271659 + MIRb SINE MIR 64 202 -66 6 752 1322 208 268 22 chr1 21923782 21924244 -175271188 - RMER4B LTR ERVK -9 576 1 6 752 311 216 138 43 chr1 21924617 21924733 -175270699 + MLT1A1 LTR MaLR 8 134 -274 6 752 538 336 108 15 chr1 21924812 21925072 -175270360 + MLT1A1 LTR MaLR 125 408 0 6 752 463 282 7 34 chr1 21925256 21925403 -175270029 + B1_Mur3 SINE Alu 5 147 -2 6 752 489 17 0 0 chr1 21925838 21925896 -175269536 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 752 1117 71 0 0 chr1 21925896 21926037 -175269395 - B1_Mus1 SINE Alu -6 142 2 6 752 719 266 24 15 chr1 21926156 21926362 -175269070 + B3 SINE B2 5 212 -4 6 752 225 196 0 0 chr1 21928853 21928904 -175266528 + (TCTCTG)n Simple_repeat Simple_repeat 3 53 0 6 752 199 29 0 79 chr1 21929031 21929069 -175266363 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 752 291 314 58 14 chr1 21929997 21930136 -175265296 + B3 SINE B2 60 204 -12 6 752 191 345 36 0 chr1 21930221 21930276 -175265156 - MIRb SINE MIR -17 251 195 6 752 23 0 0 0 chr1 21930597 21930620 -175264812 + AT_rich Low_complexity Low_complexity 1 23 0 6 752 261 0 0 0 chr1 21931511 21931540 -175263892 + (T)n Simple_repeat Simple_repeat 1 29 0 6 752 205 293 0 0 chr1 21932961 21933019 -175262413 + (TCCA)n Simple_repeat Simple_repeat 2 59 0 6 752 504 289 136 14 chr1 21933524 21933745 -175261687 + MER2 DNA MER2_type 7 254 -91 6 752 771 48 0 0 chr1 21934485 21934589 -175260843 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 752 468 0 0 0 chr1 21935608 21935660 -175259772 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 752 293 277 61 41 chr1 21936287 21936385 -175259047 - PB1D10 SINE Alu 0 117 18 6 752 546 82 0 0 chr1 21937356 21937441 -175257991 + (TC)n Simple_repeat Simple_repeat 1 85 0 6 752 545 0 15 0 chr1 21937442 21937507 -175257925 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 752 337 314 27 41 chr1 21937734 21937880 -175257552 - MER58A DNA MER1_type -24 200 57 6 752 261 0 0 0 chr1 21939932 21939961 -175255471 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 752 387 130 0 0 chr1 21939961 21940038 -175255394 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 752 316 330 42 0 chr1 21943060 21943178 -175252254 + B1F SINE Alu 9 131 -18 6 752 290 183 0 14 chr1 21943204 21943276 -175252156 + GA-rich Low_complexity Low_complexity 2 72 0 6 752 26 0 0 0 chr1 21944313 21944339 -175251093 + AT_rich Low_complexity Low_complexity 1 26 0 6 752 197 282 124 33 chr1 21944941 21945062 -175250370 - MIR SINE MIR -69 193 62 6 752 901 266 181 40 chr1 21946335 21946765 -175248667 + Lx8 LINE L1 6908 7398 -75 6 752 441 66 0 0 chr1 21947839 21947900 -175247532 + (TAA)n Simple_repeat Simple_repeat 3 63 0 6 752 21 0 0 0 chr1 21948457 21948478 -175246954 + AT_rich Low_complexity Low_complexity 1 21 0 6 752 372 68 87 0 chr1 21948715 21948818 -175246614 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 752 204 40 0 0 chr1 21949216 21949241 -175246191 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 6 752 468 0 0 0 chr1 21950397 21950449 -175244983 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 752 21 57 0 0 chr1 21951437 21951472 -175243960 + GC_rich Low_complexity Low_complexity 1 35 0 6 752 30 45 0 0 chr1 21951560 21951604 -175243828 + GC_rich Low_complexity Low_complexity 1 44 0 6 752 21 0 0 0 chr1 21951761 21951782 -175243650 + GC_rich Low_complexity Low_complexity 1 21 0 6 752 21 36 0 0 chr1 21952963 21952991 -175242441 + AT_rich Low_complexity Low_complexity 1 28 0 6 752 440 281 23 8 chr1 21954526 21954655 -175240777 - B1F SINE Alu 0 149 19 6 752 1005 153 0 0 chr1 21954763 21954907 -175240525 + B1_Mur4 SINE Alu 1 144 -6 6 752 3587 20 5 34 chr1 21955772 21956180 -175239252 + MTA_Mm LTR MaLR 1 396 0 6 752 1074 259 182 24 chr1 21956352 21956775 -175238657 + RMER5 LTR ERV1 33 522 -12 6 752 22 0 0 0 chr1 21957111 21957133 -175238299 + AT_rich Low_complexity Low_complexity 1 22 0 6 752 655 214 0 0 chr1 21958072 21958189 -175237243 + Lx6 LINE L1 6786 6902 -794 6 752 1959 210 4 136 chr1 21958421 21958889 -175236543 + Lx6 LINE L1 6919 7568 -128 6 752 1284 41 0 7 chr1 21958889 21959037 -175236395 - B1_Mm SINE Alu 0 147 1 6 752 941 200 7 196 chr1 21959037 21959173 -175236259 + Lx6 LINE L1 7569 7696 0 6 752 202 227 0 0 chr1 21959178 21959222 -175236210 + GA-rich Low_complexity Low_complexity 2 45 0 6 752 1645 164 70 0 chr1 21959222 21959520 -175235912 + ORR1A2 LTR MaLR 1 319 -8 6 752 468 35 0 0 chr1 21959557 21959615 -175235817 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 752 1194 299 66 10 chr1 21961082 21961474 -175233958 - MTD LTR MaLR 0 419 6 6 752 557 147 37 0 chr1 21961521 21961657 -175233775 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 6 752 607 139 22 34 chr1 21961668 21961847 -175233585 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 6 752 237 65 0 0 chr1 21962452 21962483 -175232949 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 752 354 173 0 0 chr1 21962596 21962671 -175232761 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 752 2589 95 2 96 chr1 21963308 21963704 -175231728 + RLTR10D LTR ERVK 1 359 0 6 752 523 94 21 0 chr1 21963891 21963987 -175231445 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 752 383 294 105 16 chr1 21964189 21964551 -175230881 - Lx8 LINE L1 0 7473 6982 6 752 499 277 51 42 chr1 21964903 21965118 -175230314 - L1MA7 LINE L1 -402 5889 5673 6 752 348 220 128 32 chr1 21965237 21965331 -175230101 + PB1D9 SINE Alu 5 107 -13 6 752 270 42 62 0 chr1 21965339 21965387 -175230045 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 752 455 0 18 0 chr1 21965660 21965715 -175229717 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 6 752 894 226 39 34 chr1 21965719 21965925 -175229507 - B3 SINE B2 -9 207 1 6 752 240 308 27 71 chr1 21965942 21966054 -175229378 + B1F SINE Alu 40 146 -3 6 752 2429 233 101 32 chr1 21966081 21966697 -175228735 - RMER1C Other Other -5 1337 680 6 752 1322 192 0 0 chr1 21968207 21968457 -175226975 - Lx2 LINE L1 -46 6951 6702 6 752 1230 127 5 0 chr1 21968454 21968643 -175226789 + Lx2 LINE L1 6521 6710 -287 6 752 611 272 79 35 chr1 21969158 21969360 -175226072 + B3 SINE B2 1 211 -5 6 752 704 273 26 20 chr1 21970518 21970734 -175224698 + B3A SINE B2 2 209 -7 6 752 951 265 143 14 chr1 21971244 21971677 -175223755 + Lx9 LINE L1 7150 7638 -6 6 752 508 251 32 23 chr1 21971770 21971943 -175223489 - RLTR11B LTR ERVK -9 519 284 6 752 445 177 94 0 chr1 21971944 21972040 -175223392 - RMER19C LTR ERVK -90 521 417 6 752 1008 76 168 19 chr1 21972080 21972241 -175223191 + B2_Mm2 SINE B2 2 186 -9 6 752 3745 127 24 3 chr1 21972548 21973126 -175222306 + Lx LINE L1 6012 6601 -53 6 752 346 176 24 0 chr1 21973391 21973476 -175221956 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 752 1179 102 0 0 chr1 21973558 21973705 -175221727 + B1_Mus1 SINE Alu 2 148 0 6 752 279 113 0 0 chr1 21973705 21973758 -175221674 + (A)n Simple_repeat Simple_repeat 1 53 0 6 752 279 0 0 0 chr1 21973761 21973792 -175221640 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 752 266 368 33 83 chr1 21973951 21974191 -175221241 - LTR84a LTR ERVL -27 730 503 6 752 690 234 61 91 chr1 21974829 21975092 -175220340 - RLTR26 LTR ERVK -217 425 171 6 752 861 95 0 0 chr1 21975649 21975765 -175219667 + B1_Mus1 SINE Alu 2 117 -31 6 752 292 219 23 47 chr1 21975694 21975780 -175219652 + RLTR25A LTR ERVK 522 605 -498 6 752 317 167 0 0 chr1 21976506 21976554 -175218878 + HAL1-3A_ME LINE L1 1976 2023 -835 6 752 533 281 0 45 chr1 21976882 21977016 -175218416 + Lx8 LINE L1 7086 7213 -260 6 752 1133 50 0 0 chr1 21977011 21977151 -175218281 - L1_Mus3 LINE L1 -300 6338 6199 7 752 2118 94 10 3 chr1 21977154 21977442 -175217990 + L1_Mus3 LINE L1 6341 6630 -8 7 752 252 327 46 13 chr1 21977459 21977611 -175217821 + Lx8 LINE L1 7225 7381 -92 6 752 7027 56 19 4 chr1 21977575 21977957 -175217475 - L1_Mm LINE L1 -1782 4101 3715 7 752 212 0 36 0 chr1 21977957 21977985 -175217447 + (TTA)n Simple_repeat Simple_repeat 2 30 0 7 752 7027 56 19 4 chr1 21977985 21978502 -175216930 - L1_Mm LINE L1 -2169 3714 3190 7 752 4925 66 0 3 chr1 21978502 21979093 -175216339 + L1Md_F2 LINE L1 5992 6580 -2 7 752 289 217 14 14 chr1 21979129 21979199 -175216233 + RMER1C Other Other 1254 1323 -19 7 752 357 278 117 62 chr1 21979166 21979603 -175215829 + L1MEe LINE L1 1177 1637 -4447 7 752 2295 305 93 23 chr1 21979627 21980582 -175214850 + Lx8 LINE L1 6096 7117 -356 7 752 579 15 0 0 chr1 21980582 21980650 -175214782 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 752 3990 155 24 17 chr1 21980982 21981319 -175214113 + RMER6D LTR ERVK 1 336 -384 7 752 567 0 0 0 chr1 21981319 21981382 -175214050 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 752 3990 155 24 17 chr1 21981382 21981751 -175213681 + RMER6D LTR ERVK 337 712 -8 7 752 760 279 25 30 chr1 21982224 21982427 -175213005 - B3 SINE B2 -4 212 11 7 752 236 206 0 16 chr1 21982565 21982629 -175212803 + T-rich Low_complexity Low_complexity 5 67 0 7 752 908 198 89 5 chr1 21985119 21985332 -175210100 - Lx LINE L1 0 6654 6424 7 752 2303 91 3 54 chr1 21985334 21985684 -175209748 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 752 57343 16 8 17 chr1 21985684 21992190 -175203242 - IAPEz-int LTR ERVK 0 6481 35 7 752 2299 91 3 54 chr1 21992202 21992552 -175202880 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 752 5372 65 1 7 chr1 21992552 21993231 -175202201 - Lx LINE L1 -225 6429 5755 7 752 21 0 0 0 chr1 21993928 21993949 -175201483 + AT_rich Low_complexity Low_complexity 1 21 0 7 752 4435 150 59 16 chr1 21994052 21994782 -175200650 - Lx2B LINE L1 -4 6996 6236 7 752 935 286 107 42 chr1 21994799 21995429 -175200003 + RMER12 LTR ERVK 1 830 -574 7 752 1451 65 0 32 chr1 21995429 21995518 -175199914 - L1_Mus2 LINE L1 0 6566 6478 7 752 3652 23 5 0 chr1 21995518 21995912 -175199520 + MTA_Mm LTR MaLR 1 396 0 7 752 1451 65 0 32 chr1 21995912 21996012 -175199420 - L1_Mus2 LINE L1 -89 6477 6383 7 752 561 258 47 108 chr1 21996012 21996308 -175199124 + RMER12 LTR ERVK 593 1027 -377 7 752 494 276 126 136 chr1 21996323 21996576 -175198856 + RMER12 LTR ERVK 1152 1372 -436 7 752 1173 91 0 0 chr1 21996576 21997163 -175198269 + (TG)n Simple_repeat Simple_repeat 1 587 0 7 752 505 276 126 136 chr1 21997163 21997511 -175197921 + RMER12 LTR ERVK 946 1228 -94 7 752 26 30 0 0 chr1 21997810 21997843 -175197589 + AT_rich Low_complexity Low_complexity 1 33 0 7 752 2662 88 6 3 chr1 21997843 21998186 -175197246 - L1_Mus3 LINE L1 0 6638 6295 7 752 1302 124 37 5 chr1 21998251 21998438 -175196994 + B2_Mm2 SINE B2 2 194 -1 7 752 247 213 13 13 chr1 21999132 21999208 -175196224 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 752 396 0 0 0 chr1 21999673 21999717 -175195715 + (TGG)n Simple_repeat Simple_repeat 3 46 0 7 752 697 263 121 5 chr1 21999799 21999998 -175195434 - Lx6 LINE L1 -4 7456 7235 7 752 3602 235 64 49 chr1 22000000 22001815 -175193617 - Lx5 LINE L1 -200 6850 5006 1 752 30106 53 2 2 chr1 22001820 22006580 -175188852 - L1Md_F2 LINE L1 0 6582 1822 2 752 2461 223 56 8 chr1 22006574 22007212 -175188220 - Lx5 LINE L1 -6762 966 298 1 752 3022 122 48 6 chr1 22007644 22008128 -175187304 + RLTR1C LTR ERV1 1 507 0 3 752 351 0 0 0 chr1 22008235 22008274 -175187158 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 752 805 132 0 30 chr1 22008874 22008990 -175186442 + B1_Mur4 SINE Alu 22 137 -13 5 752 288 0 0 0 chr1 22008990 22009022 -175186410 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 752 805 132 0 30 chr1 22009022 22009038 -175186394 + B1_Mur4 SINE Alu 138 150 0 5 752 391 315 86 41 chr1 22009187 22009432 -175186000 + L1ME3B LINE L1 5614 5869 -371 7 752 28 29 0 0 chr1 22009731 22009766 -175185666 + AT_rich Low_complexity Low_complexity 1 35 0 8 752 2485 107 72 3 chr1 22009960 22010336 -175185096 - Lx3_Mus LINE L1 -10 6999 6598 9 752 1645 96 239 2 chr1 22010337 22010751 -175184681 + Lx3_Mus LINE L1 6088 6599 -410 9 752 232 366 0 0 chr1 22012183 22012262 -175183170 + ID2 SINE ID 11 89 -63 1 752 369 337 45 6 chr1 22013471 22013650 -175181782 + L1MC LINE L1 5275 5460 -884 1 752 195 42 0 0 chr1 22013650 22013674 -175181758 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1 752 527 309 0 0 chr1 22013675 22013801 -175181631 - B1F2 SINE Alu -7 142 17 1 752 1672 204 20 14 chr1 22014379 22014817 -175180615 + Lx5 LINE L1 898 1338 -5748 1 752 5768 178 120 29 chr1 22014812 22017301 -175178131 + Lx5 LINE L1 3479 6454 -596 1 752 4834 115 6 11 chr1 22017301 22017320 -175178112 - Lx LINE L1 0 6654 6636 1 752 333 0 0 0 chr1 22017320 22017357 -175178075 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 752 4834 115 6 11 chr1 22017357 22018058 -175177374 - Lx LINE L1 -19 6635 5938 1 752 5206 199 85 52 chr1 22018058 22018641 -175176791 + Lx5 LINE L1 6455 7050 0 1 752 261 75 0 0 chr1 22018643 22018683 -175176749 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 752 637 253 24 82 chr1 22018946 22019153 -175176279 - B3A SINE B2 0 198 4 1 752 1138 82 0 7 chr1 22019232 22019379 -175176053 + B1_Mus2 SINE Alu 2 147 0 1 752 396 40 0 0 chr1 22019503 22019553 -175175879 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 752 23 0 0 0 chr1 22019662 22019685 -175175747 + AT_rich Low_complexity Low_complexity 1 23 0 2 753 205 238 0 0 chr1 22020741 22020783 -175174649 + (CCG)n Simple_repeat Simple_repeat 2 43 0 2 753 2898 123 24 13 chr1 22020794 22021255 -175174177 - Lx2 LINE L1 -2 6995 6530 2 753 783 243 64 5 chr1 22021482 22021685 -175173747 + B3 SINE B2 1 215 -1 2 753 710 84 0 9 chr1 22022207 22022315 -175173117 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2 753 593 297 26 26 chr1 22023104 22023149 -175172283 - B3A SINE B2 -6 192 153 2 753 257 75 25 0 chr1 22023149 22023189 -175172243 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 753 593 297 26 26 chr1 22023189 22023333 -175172099 - B3A SINE B2 -46 152 4 2 753 3485 154 40 6 chr1 22023385 22024007 -175171425 + Lx2B LINE L1 6350 6992 -8 2 753 513 47 0 0 chr1 22024007 22024071 -175171361 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 753 252 0 0 0 chr1 22024071 22024099 -175171333 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 3 753 580 267 8 8 chr1 22024259 22024376 -175171056 + RSINE1 SINE B4 4 120 -45 3 753 333 0 0 0 chr1 22024376 22024413 -175171019 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 753 659 308 0 4 chr1 22024512 22024740 -175170692 - Lx6 LINE L1 -12 7448 7222 3 753 534 333 0 19 chr1 22025211 22025367 -175170065 - RSINE1 SINE B4 -2 163 11 3 753 432 0 0 0 chr1 22025753 22025801 -175169631 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 3 753 1116 92 0 0 chr1 22027064 22027205 -175168227 + B1_Mm SINE Alu 1 141 -6 3 753 254 29 29 0 chr1 22027207 22027242 -175168190 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 753 528 297 102 11 chr1 22027732 22027919 -175167513 - B3 SINE B2 -12 204 1 3 753 530 297 17 0 chr1 22028284 22028459 -175166973 - B3A SINE B2 -18 180 3 3 753 212 301 32 0 chr1 22028700 22028793 -175166639 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 753 826 269 11 26 chr1 22028829 22029020 -175166412 + B3 SINE B2 17 204 -12 4 753 479 213 16 0 chr1 22029031 22029153 -175166279 + Lx6 LINE L1 7328 7451 -9 4 753 547 320 96 15 chr1 22029822 22030279 -175165153 - L1MC1 LINE L1 -183 6325 5832 4 753 980 293 130 23 chr1 22030361 22031230 -175164202 - L1MC1 LINE L1 -2322 3999 3038 4 753 667 289 34 36 chr1 22031301 22031483 -175163949 - L1MC1 LINE L1 -3654 2667 2490 4 753 194 0 0 37 chr1 22031483 22031510 -175163922 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 4 753 667 259 53 33 chr1 22031510 22031753 -175163679 - L1MC1 LINE L1 -3832 2489 2241 4 753 193 191 0 41 chr1 22033289 22033338 -175162094 - L2c LINE L2 -84 3303 3257 4 753 1415 235 33 9 chr1 22035544 22035874 -175159558 + ORR1D1 LTR MaLR 2 339 -35 4 753 1374 170 114 4 chr1 22035884 22036146 -175159286 + ORR1B2 LTR MaLR 32 323 -44 4 753 1544 156 0 37 chr1 22036146 22036378 -175159054 - RMER19A LTR ERVK -3 734 513 4 753 2570 112 20 17 chr1 22036378 22036786 -175158646 + RLTR9E LTR ERVK 1 409 0 4 753 2998 139 12 64 chr1 22036786 22037280 -175158152 - RMER19A LTR ERVK -270 467 1 4 753 319 146 0 0 chr1 22037280 22037328 -175158104 + ORR1B2 LTR MaLR 331 378 0 4 753 1149 149 37 0 chr1 22037328 22037516 -175157916 + ORR1B2-int LTR MaLR 1 195 -1314 4 753 490 325 13 0 chr1 22037520 22037671 -175157761 - RSINE1 SINE B4 -11 154 2 5 753 326 82 81 16 chr1 22038119 22038181 -175157251 + RMER19A LTR ERVK 1 66 -671 5 753 603 171 0 0 chr1 22038181 22038292 -175157140 - MurERV4_19-int LTR ERVK -3734 2046 1936 5 753 311 136 0 43 chr1 22039164 22039233 -175156199 + C-rich Low_complexity Low_complexity 4 69 0 5 753 302 321 61 137 chr1 22039685 22040161 -175155271 - MER67D LTR ERV1 -5 509 70 5 753 29 0 0 0 chr1 22040270 22040299 -175155133 + AT_rich Low_complexity Low_complexity 1 29 0 5 753 658 261 8 0 chr1 22040479 22040613 -175154819 - B1_Mur2 SINE Alu -8 141 7 5 753 333 0 0 0 chr1 22040701 22040738 -175154694 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 753 28 71 0 0 chr1 22040949 22041005 -175154427 + AT_rich Low_complexity Low_complexity 1 56 0 5 753 261 0 0 0 chr1 22041079 22041108 -175154324 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 5 753 468 355 99 4 chr1 22041376 22041628 -175153804 - RMER15 LTR ERVL 0 575 300 6 753 240 261 40 105 chr1 22041721 22041845 -175153587 - RMER15 LTR ERVL -458 117 2 6 753 491 340 45 0 chr1 22042113 22042269 -175153163 + RSINE1 SINE B4 3 165 0 6 753 2780 226 69 27 chr1 22043640 22044586 -175150846 - Lx9 LINE L1 -1648 5996 4950 6 753 25247 26 0 0 chr1 22044593 22048474 -175146958 - L1Md_A LINE L1 -2 6580 2699 6 753 19457 7 0 1 chr1 22048472 22051617 -175143815 - L1Md_A LINE L1 -2337 3546 403 6 753 499 222 16 60 chr1 22051615 22051797 -175143635 - Lx9 LINE L1 -898 4949 4776 6 753 1475 278 111 13 chr1 22051817 22052437 -175142995 + Lx9 LINE L1 6369 7049 -595 6 753 2122 212 5 10 chr1 22052481 22052882 -175142550 + MTB_Mm LTR MaLR 1 399 -8 6 753 721 276 153 37 chr1 22052886 22053277 -175142155 + Lx9 LINE L1 7066 7516 -128 6 753 207 0 0 0 chr1 22053277 22053300 -175142132 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 753 721 276 153 37 chr1 22053300 22053423 -175142009 + Lx9 LINE L1 7517 7640 -4 6 753 522 83 0 0 chr1 22054146 22054218 -175141214 + (GGGA)n Simple_repeat Simple_repeat 3 74 0 6 753 405 0 0 0 chr1 22054340 22054385 -175141047 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 753 17466 88 51 1 chr1 22054596 22056301 -175139131 + Lx3_Mus LINE L1 2861 4638 -1248 7 753 285 51 0 0 chr1 22056301 22056340 -175139092 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 753 14117 96 47 2 chr1 22056340 22058564 -175136868 + Lx3_Mus LINE L1 4639 6991 -18 7 753 324 0 0 0 chr1 22058568 22058604 -175136828 + (CATA)n Simple_repeat Simple_repeat 2 37 0 7 753 2362 28 14 0 chr1 22058698 22058980 -175136452 - L1Md_F3 LINE L1 0 6584 6299 7 753 989 213 51 258 chr1 22059184 22059653 -175135779 - ORR1D1 LTR MaLR 0 374 3 7 753 1419 119 18 0 chr1 22060696 22060914 -175134518 - URR1A DNA MER1_type -3 223 2 7 753 350 333 11 0 chr1 22061046 22061136 -175134296 + MER58A DNA MER1_type 5 95 -129 7 753 3209 112 10 24 chr1 22063402 22063898 -175131534 + Lx3_Mus LINE L1 6513 7001 -8 7 753 235 0 28 28 chr1 22063899 22063935 -175131497 + (TAA)n Simple_repeat Simple_repeat 1 36 0 7 753 307 353 19 13 chr1 22064109 22064264 -175131168 + Lx8 LINE L1 6193 6348 -1125 7 753 1803 191 78 26 chr1 22064368 22064755 -175130677 + MTB_Mm LTR MaLR 1 407 0 8 753 282 342 51 0 chr1 22065168 22065285 -175130147 - Cheshire DNA MER1_type -2148 272 150 8 753 366 339 0 33 chr1 22065445 22065567 -175129865 - B1_Mur4 SINE Alu -7 143 26 8 753 266 294 92 8 chr1 22065897 22066017 -175129415 + L1MB7 LINE L1 322 451 -6156 8 753 427 239 134 21 chr1 22066136 22066375 -175129057 + L1MB7 LINE L1 5622 5887 -860 8 753 934 293 89 24 chr1 22066446 22067111 -175128321 + L1MB7 LINE L1 5953 6660 -125 8 753 830 257 64 15 chr1 22067116 22067381 -175128051 + B4A SINE B4 5 282 -10 8 753 357 330 0 10 chr1 22067939 22068043 -175127389 + Lx8 LINE L1 7185 7287 -186 8 753 28329 75 27 5 chr1 22068344 22070344 -175125088 + L1Md_F2 LINE L1 165 2135 -3748 8 753 3049 44 68 0 chr1 22070344 22070729 -175124703 + IAPLTR2a LTR ERVK 1 411 0 8 753 28329 71 52 10 chr1 22070729 22073970 -175121462 + L1Md_F2 LINE L1 2136 5586 -297 8 753 8088 43 4 4 chr1 22073970 22074966 -175120466 + L1Md_F2 LINE L1 5587 6582 0 8 753 324 0 0 0 chr1 22075111 22075147 -175120285 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 753 955 247 35 18 chr1 22076044 22076303 -175119129 + MTC LTR MaLR 1 276 -143 8 753 1331 106 5 28 chr1 22076303 22076516 -175118916 - Lx2 LINE L1 -616 6381 6174 9 753 3230 138 9 30 chr1 22076516 22077082 -175118350 + Lx2 LINE L1 6443 6996 -1 9 753 739 244 34 68 chr1 22077093 22077300 -175118132 + MTC LTR MaLR 210 409 -10 8 753 7153 118 18 14 chr1 22077527 22078768 -175116664 + L1_Mm LINE L1 2520 3765 -2118 9 753 3117 74 29 36 chr1 22078770 22079072 -175116360 + L1_Mus2 LINE L1 6118 6411 -155 9 753 1976 135 102 51 chr1 22079072 22079524 -175115908 + IAPLTR2_Mm LTR ERVK 1 475 0 9 753 3117 74 29 36 chr1 22079524 22079670 -175115762 + L1_Mus2 LINE L1 6412 6563 -3 9 753 449 71 14 0 chr1 22079670 22079740 -175115692 + (TA)n Simple_repeat Simple_repeat 1 71 0 9 753 394 324 63 31 chr1 22080310 22080533 -175114899 + L1MC4 LINE L1 6375 6604 -1438 9 753 864 151 6 11 chr1 22080536 22080717 -175114715 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 753 326 287 88 7 chr1 22080822 22080959 -175114473 - L1MC3 LINE L1 -72 7713 7566 9 753 991 239 9 0 chr1 22081050 22081272 -175114160 + URR1B DNA MER1_type 1 224 -1 9 753 1216 229 40 155 chr1 22081286 22081731 -175113701 + RMER15 LTR ERVL 27 420 -155 9 753 226 388 85 0 chr1 22082198 22082327 -175113105 + MTE2b LTR MaLR 1 140 -239 1 753 35066 29 1 7 chr1 22082372 22087560 -175107872 + L1Md_T LINE L1 440 5586 -297 1 753 8559 29 0 0 chr1 22087560 22088556 -175106876 + L1Md_T LINE L1 5587 6582 0 1 753 367 314 101 14 chr1 22088978 22089265 -175106167 - L1MC3 LINE L1 -1197 6588 6277 9 753 435 273 106 56 chr1 22089473 22089671 -175105761 + B4A SINE B4 10 217 -75 1 753 1194 272 27 33 chr1 22089694 22090025 -175105407 - ORR1E LTR MaLR -30 329 1 1 753 498 126 0 11 chr1 22090038 22090126 -175105306 + MERVL_2A-int LTR ERVL 5675 5761 0 1 753 1083 278 129 13 chr1 22090130 22090604 -175104828 + MT2A LTR ERVL 5 533 0 1 753 3148 166 73 87 chr1 22090626 22091447 -175103985 - RLTR13C2 LTR ERVK 0 983 1 1 753 270 0 0 0 chr1 22091521 22091551 -175103881 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 753 477 62 0 0 chr1 22091551 22091616 -175103816 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 753 433 293 139 38 chr1 22091642 22091965 -175103467 - MLT1A0 LTR MaLR 0 408 9 1 753 244 215 0 71 chr1 22091992 22092062 -175103370 - L1MD LINE L1 -2231 5764 5700 1 753 552 264 61 15 chr1 22092181 22092312 -175103120 - B3 SINE B2 -78 138 2 1 753 372 68 0 103 chr1 22092315 22092480 -175102952 + T-rich Low_complexity Low_complexity 1 148 0 1 753 1072 71 0 0 chr1 22092483 22092624 -175102808 - B1_Mus1 SINE Alu 0 148 8 1 753 1712 195 23 25 chr1 22094069 22094468 -175100964 + Lx4B LINE L1 6661 7058 0 1 753 381 284 109 83 chr1 22095088 22095215 -175100217 + B3A SINE B2 1 142 -56 1 753 1203 28 0 0 chr1 22095215 22095358 -175100074 + (TCTCCC)n Simple_repeat Simple_repeat 3 145 0 1 753 381 284 109 83 chr1 22095358 22095422 -175100010 + B3A SINE B2 143 197 -1 1 753 180 194 28 0 chr1 22095476 22095512 -175099920 + MIRb SINE MIR 37 73 -195 1 753 180 0 0 0 chr1 22096903 22096923 -175098509 + (GAGAA)n Simple_repeat Simple_repeat 2 21 0 1 753 7021 71 15 1 chr1 22097399 22098592 -175096840 - L1_Mus2 LINE L1 -1 6565 5362 1 753 3985 36 8 0 chr1 22099004 22099475 -175095957 - MT2C_Mm LTR ERVL 0 475 1 1 753 282 355 133 57 chr1 22099657 22099920 -175095512 - B4A SINE B4 -2 290 8 1 753 532 242 4 8 chr1 22100775 22101021 -175094411 + (CA)n Simple_repeat Simple_repeat 1 245 0 1 753 572 294 43 18 chr1 22101716 22101879 -175093553 + B4A SINE B4 82 248 -44 1 753 204 208 0 40 chr1 22102566 22102616 -175092816 + A-rich Low_complexity Low_complexity 3 50 0 1 753 198 278 19 0 chr1 22102753 22102807 -175092625 - MIRc SINE MIR -114 154 100 1 753 1032 139 13 0 chr1 22103072 22103230 -175092202 + B2_Mm2 SINE B2 4 163 -32 1 753 726 304 0 30 chr1 22103354 22103551 -175091881 - B3A SINE B2 -1 197 7 1 753 600 64 32 0 chr1 22103902 22103996 -175091436 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 1 753 756 304 60 66 chr1 22104760 22105242 -175090190 - RLTR12B LTR ERVK -14 514 36 1 753 262 115 19 19 chr1 22105259 22105312 -175090120 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 753 318 322 66 0 chr1 22105312 22105433 -175089999 - B1F1 SINE Alu -13 136 8 1 753 585 211 0 0 chr1 22105474 22105602 -175089830 - L1_Mur1 LINE L1 -6016 966 839 1 753 752 147 0 7 chr1 22105600 22105737 -175089695 + L1_Mur1 LINE L1 958 1093 -5889 1 753 403 233 64 43 chr1 22105791 22105885 -175089547 - PB1D7 SINE Alu -20 100 5 1 753 1100 137 26 5 chr1 22105926 22106117 -175089315 + B2_Mm2 SINE B2 1 195 0 1 753 23 0 0 0 chr1 22106530 22106553 -175088879 + AT_rich Low_complexity Low_complexity 1 23 0 1 753 348 24 0 0 chr1 22106580 22106621 -175088811 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 753 547 268 7 66 chr1 22106636 22106788 -175088644 - RSINE1 SINE B4 -17 148 6 1 753 331 286 50 8 chr1 22107167 22107287 -175088145 + PB1 SINE Alu 3 127 0 1 753 305 328 52 30 chr1 22107991 22108126 -175087306 + B4A SINE B4 43 180 -112 1 753 387 0 0 0 chr1 22108239 22108282 -175087150 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 753 469 329 13 68 chr1 22108423 22108658 -175086774 - ID_B1 SINE B4 0 224 3 1 753 1638 251 14 3 chr1 22110218 22110570 -175084862 + MTC LTR MaLR 1 356 -65 1 753 1473 119 8 16 chr1 22110579 22110835 -175084597 - RMER17D2 LTR ERVK 0 809 556 1 753 4242 138 54 9 chr1 22110831 22111584 -175083848 - RMER17D2 LTR ERVK -22 787 1 1 753 474 139 0 0 chr1 22111629 22111708 -175083724 + Lx9 LINE L1 6777 6855 -789 1 753 1661 210 55 39 chr1 22111802 22112222 -175083210 - RMER13A LTR ERVK -417 491 11 1 753 1029 159 36 23 chr1 22112222 22112441 -175082991 + Lx9 LINE L1 7229 7450 -194 1 753 1249 206 40 62 chr1 22112414 22112735 -175082697 + Lx5 LINE L1 6735 7048 -2 1 753 495 196 8 8 chr1 22112745 22112879 -175082553 + Lx9 LINE L1 7511 7644 0 1 753 276 30 0 0 chr1 22113099 22113132 -175082300 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 753 2416 242 65 6 chr1 22114707 22115448 -175079984 + Lx4B LINE L1 6197 6964 -45 1 753 1264 265 7 35 chr1 22115454 22115813 -175079619 + MTD LTR MaLR 68 403 -16 1 753 3328 28 0 0 chr1 22116278 22116666 -175078766 + L1Md_A LINE L1 6193 6580 -2 1 753 23 54 0 0 chr1 22117233 22117270 -175078162 + AT_rich Low_complexity Low_complexity 1 37 0 1 753 279 54 0 0 chr1 22117284 22117321 -175078111 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 753 447 298 23 45 chr1 22117548 22117724 -175077708 - B3A SINE B2 0 198 27 1 753 579 275 66 12 chr1 22117724 22117967 -175077465 - L1M2 LINE L1 -716 5575 5320 1 753 4441 57 9 2 chr1 22118021 22118588 -175076844 - L1_Mus1 LINE L1 -1 6566 5996 1 753 6863 155 45 105 chr1 22118731 22119378 -175076054 + Lx7 LINE L1 2707 3362 -2518 1 753 359 78 0 49 chr1 22119378 22119459 -175075973 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 753 6863 155 45 105 chr1 22119459 22119502 -175075930 + Lx7 LINE L1 3363 3407 -2473 1 753 207 0 0 0 chr1 22119502 22119525 -175075907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 753 1199 35 0 0 chr1 22119525 22119668 -175075764 - B1_Mm SINE Alu -3 144 2 1 753 1403 6 0 0 chr1 22119672 22119834 -175075598 - B2_Mm1a SINE B2 -22 171 10 1 753 5515 18 0 0 chr1 22119834 22120461 -175074971 + L1Md_A LINE L1 5956 6582 0 1 753 5451 37 0 11 chr1 22120459 22121116 -175074316 + L1Md_F2 LINE L1 5933 6582 0 1 753 6863 155 45 105 chr1 22121116 22122184 -175073248 + Lx7 LINE L1 3411 4516 -1364 1 753 3986 202 17 9 chr1 22122176 22123097 -175072335 + Lx7 LINE L1 5015 5945 -1751 1 753 2721 213 65 91 chr1 22123078 22123468 -175071964 + Lx7 LINE L1 6786 7208 -488 1 753 450 0 0 0 chr1 22123468 22123518 -175071914 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 753 2721 213 65 91 chr1 22123518 22124058 -175071374 + Lx7 LINE L1 7209 7691 -5 1 753 1044 302 51 32 chr1 22124441 22125022 -175070410 - Lx8 LINE L1 -1560 5913 5289 1 753 261 139 0 0 chr1 22125174 22125217 -175070215 + (CAT)n Simple_repeat Simple_repeat 3 45 0 1 753 25 0 0 0 chr1 22126250 22126275 -175069157 + AT_rich Low_complexity Low_complexity 1 25 0 1 753 597 326 87 57 chr1 22126657 22126992 -175068440 + ORR1E LTR MaLR 7 351 -8 1 753 1111 246 89 0 chr1 22127210 22127446 -175067986 + ORR1D2 LTR MaLR 1 257 -113 1 753 645 132 31 0 chr1 22127448 22127577 -175067855 + Lx4B LINE L1 1573 1705 -4172 1 753 17051 156 36 48 chr1 22127575 22128222 -175067210 + Lx4B LINE L1 2220 2861 -3016 1 753 399 41 0 0 chr1 22128222 22128271 -175067161 + (GGGAGA)n Simple_repeat Simple_repeat 6 54 0 1 753 17051 180 28 30 chr1 22128271 22132339 -175063093 + Lx4B LINE L1 2862 6931 -45 1 753 1866 170 22 0 chr1 22133076 22133440 -175061992 + Lx LINE L1 4667 5038 -848 1 753 9711 166 253 12 chr1 22133433 22136541 -175058891 - L1VL4 LINE L1 -1206 4680 822 1 753 666 75 0 0 chr1 22137549 22137642 -175057790 + (TTTC)n Simple_repeat Simple_repeat 1 93 0 1 753 600 254 0 22 chr1 22137643 22137780 -175057652 - B1_Mus2 SINE Alu -13 134 1 1 753 243 0 0 0 chr1 22138043 22138070 -175057362 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 753 3344 51 11 5 chr1 22138079 22138515 -175056917 - L1Md_F2 LINE L1 -1 6581 6143 1 753 6483 73 0 0 chr1 22138516 22139406 -175056026 - L1_Mm LINE L1 -734 5149 4260 1 753 1005 119 13 0 chr1 22139409 22139568 -175055864 + L1Md_F LINE L1 113 273 -6246 1 753 1991 71 4 0 chr1 22139568 22139822 -175055610 - L1_Mus1 LINE L1 -9 6558 6304 1 753 403 202 0 11 chr1 22140625 22140715 -175054717 + Lx9 LINE L1 7350 7438 -206 1 753 2640 123 18 9 chr1 22140693 22141259 -175054173 + Lx LINE L1 5441 6012 -642 1 753 9752 108 57 4 chr1 22141258 22142895 -175052537 + L1_Mm LINE L1 2506 4229 -1654 1 753 15656 35 0 3 chr1 22142889 22144173 -175051259 + L1Md_T LINE L1 574 1954 -3932 1 753 3236 21 39 3 chr1 22144173 22144555 -175050877 - MTA_Mm LTR MaLR 0 396 1 1 753 9044 37 5 2 chr1 22144557 22145650 -175049782 - MTA_Mm-int LTR MaLR -2 1096 1 1 753 3236 21 39 3 chr1 22145650 22146032 -175049400 - MTA_Mm LTR MaLR 0 396 1 1 753 15656 62 0 5 chr1 22146032 22147474 -175047958 + L1Md_T LINE L1 1955 3390 -2496 1 753 2702 31 2 154 chr1 22147474 22147934 -175047498 - RLTR10 LTR ERVK 0 390 1 1 753 10291 112 41 39 chr1 22147936 22149877 -175045555 - RLTR10-int LTR ERVK -3 1984 41 1 753 2948 23 2 151 chr1 22149887 22150345 -175045087 - RLTR10 LTR ERVK 0 390 1 1 94 18021 22 0 0 chr1 22150345 22152549 -175042883 + L1Md_T LINE L1 3386 5589 -297 1 754 9034 5 0 0 chr1 22152549 22153545 -175041887 + L1Md_T LINE L1 5590 6585 0 1 754 10517 87 12 2 chr1 22153545 22155874 -175039558 + L1_Mus1 LINE L1 4217 6565 -2 1 754 272 91 23 0 chr1 22155885 22155929 -175039503 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1 754 3860 154 22 6 chr1 22155940 22156586 -175038846 + Lx LINE L1 5998 6653 -1 1 754 210 37 0 0 chr1 22156588 22156615 -175038817 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 1 754 2870 246 23 13 chr1 22156665 22157370 -175038062 + Lx6 LINE L1 6749 7460 0 1 754 270 314 73 73 chr1 22157628 22157779 -175037653 - MER96 DNA hAT -19 156 6 1 754 246 392 80 11 chr1 22157780 22157968 -175037464 - LTR89 LTR ERVL? -219 660 460 1 754 596 282 28 0 chr1 22157988 22158169 -175037263 + L3 LINE CR1 3546 3731 -758 1 754 1880 226 37 17 chr1 22158598 22159004 -175036428 - Lx5 LINE L1 -3 7047 6634 1 754 14948 166 33 141 chr1 22159020 22160902 -175034530 - L1_Mur2 LINE L1 -13 5864 3980 1 754 362 291 99 74 chr1 22160902 22161350 -175034082 + RLTR11B LTR ERVK 1 549 -19 1 754 14948 166 33 141 chr1 22161350 22162691 -175032741 - L1_Mur2 LINE L1 -13 3979 2635 1 754 195 69 0 0 chr1 22162691 22162720 -175032712 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 754 14948 166 33 141 chr1 22162720 22162752 -175032680 - L1_Mur2 LINE L1 -3243 2634 2609 1 754 3944 139 58 12 chr1 22162752 22163159 -175032273 - RMER6A LTR ERVK 0 756 320 1 754 450 0 0 0 chr1 22163159 22163209 -175032223 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 754 3944 139 58 12 chr1 22163209 22163524 -175031908 - RMER6A LTR ERVK -437 319 1 1 754 14948 166 33 141 chr1 22163524 22163945 -175031487 - L1_Mur2 LINE L1 -3269 2608 2208 1 754 2008 229 41 16 chr1 22163945 22164459 -175030973 - RLTR11A2 LTR ERVK 0 527 1 1 754 14948 166 33 141 chr1 22164459 22164619 -175030813 - L1_Mur2 LINE L1 -3670 2207 2053 1 754 360 0 0 0 chr1 22164619 22164659 -175030773 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 754 14948 166 33 141 chr1 22164659 22164760 -175030672 - L1_Mur2 LINE L1 -3825 2052 1952 1 754 1198 165 55 0 chr1 22164761 22165154 -175030278 - L1_Mur2 LINE L1 -4492 1385 919 1 754 2173 85 9 62 chr1 22166852 22167192 -175028240 - ORR1A2 LTR MaLR 0 327 6 2 754 1777 249 20 10 chr1 22167599 22168004 -175027428 - MTD LTR MaLR -8 411 3 2 754 3653 276 43 68 chr1 22168012 22169293 -175026139 - MTD-int LTR MaLR -9 1249 1 2 754 1502 187 111 39 chr1 22169293 22169682 -175025750 - MTD LTR MaLR 0 419 3 2 754 305 318 132 27 chr1 22170503 22170982 -175024450 - L1MC4 LINE L1 -211 7831 7303 2 754 282 263 142 28 chr1 22171015 22171156 -175024276 - L1MC4 LINE L1 -961 7081 6925 2 754 3881 209 78 117 chr1 22171231 22172337 -175023095 - RMER1B Other Other -2 1064 2 2 754 632 342 24 68 chr1 22172502 22172797 -175022635 + MLT2B4 LTR ERVL 79 360 -196 2 754 22 0 0 0 chr1 22173892 22173914 -175021518 + AT_rich Low_complexity Low_complexity 1 22 0 2 754 1038 102 0 7 chr1 22174171 22174319 -175021113 + B1_Mus1 SINE Alu 1 147 -1 2 754 312 291 90 68 chr1 22174339 22174493 -175020939 + HAL1-3A_ME LINE L1 2286 2451 -407 2 754 465 358 0 35 chr1 22174493 22174664 -175020768 + RSINE1 SINE B4 1 165 0 2 754 312 291 90 68 chr1 22174664 22174686 -175020746 + HAL1-3A_ME LINE L1 2452 2466 -392 2 754 1405 239 85 8 chr1 22175179 22175555 -175019877 - MTD LTR MaLR -14 405 1 2 754 8020 56 0 0 chr1 22175595 22176826 -175018606 - L1Md_F2 LINE L1 0 6582 5352 2 754 23 0 0 0 chr1 22176833 22176856 -175018576 + AT_rich Low_complexity Low_complexity 1 23 0 2 754 242 197 45 0 chr1 22177089 22177155 -175018277 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2 754 261 0 0 0 chr1 22177357 22177386 -175018046 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 754 2033 248 81 5 chr1 22177482 22178050 -175017382 - Lx3C LINE L1 -4 6972 6362 2 754 1809 193 25 30 chr1 22178054 22178460 -175016972 + Lx2B LINE L1 5939 6342 -658 2 754 21 36 0 0 chr1 22179244 22179272 -175016160 + AT_rich Low_complexity Low_complexity 1 28 0 2 754 1874 187 62 16 chr1 22179982 22180368 -175015064 + RLTR20B2 LTR ERVK 1 404 -156 2 754 4749 64 2 19 chr1 22181109 22181734 -175013698 + L1Md_F2 LINE L1 5967 6580 -2 2 754 2739 103 8 12 chr1 22183367 22183769 -175011663 - MTB LTR MaLR 0 400 1 2 754 231 222 0 0 chr1 22183791 22183845 -175011587 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 754 678 314 59 12 chr1 22186088 22186411 -175009021 + L1MA5 LINE L1 5601 5938 -362 2 754 318 312 52 0 chr1 22187488 22187584 -175007848 + ORSL DNA Tip100 2 102 -173 2 754 412 321 130 102 chr1 22187584 22187868 -175007564 + B4A SINE B4 1 292 0 2 754 315 122 0 0 chr1 22187966 22188015 -175007417 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 754 387 105 0 0 chr1 22188036 22188093 -175007339 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 754 402 115 0 0 chr1 22188193 22188254 -175007178 + (CTG)n Simple_repeat Simple_repeat 2 62 0 2 754 293 322 22 22 chr1 22188275 22188367 -175007065 - FAM SINE Alu -78 233 142 2 754 209 205 29 0 chr1 22188742 22188796 -175006636 - MIRm SINE MIR -126 142 85 2 754 1871 160 96 8 chr1 22188808 22189193 -175006239 + MTC LTR MaLR 1 419 -2 2 754 1113 75 28 11 chr1 22189963 22190139 -175005293 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2 754 474 70 0 0 chr1 22190821 22190892 -175004540 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 754 291 157 0 0 chr1 22190897 22190948 -175004484 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 754 996 203 220 16 chr1 22191048 22191353 -175004079 + ORR1D1 LTR MaLR 1 367 -7 2 754 621 271 60 41 chr1 22192104 22192373 -175003059 - MER58B DNA MER1_type -66 275 2 2 754 2302 73 3 0 chr1 22192655 22192958 -175002474 + L1_Mus2 LINE L1 6251 6554 -12 2 754 273 57 0 0 chr1 22192961 22192996 -175002436 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 2 754 274 260 40 10 chr1 22193176 22193277 -175002155 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 2 754 405 153 0 0 chr1 22193295 22193367 -175002065 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 754 262 319 157 16 chr1 22193391 22193512 -175001920 - B4A SINE B4 0 292 155 2 754 1234 37 0 18 chr1 22193550 22193715 -175001717 + L1Md_F2 LINE L1 6421 6582 0 2 754 438 197 0 0 chr1 22193722 22193798 -175001634 - B4A SINE B4 -215 77 2 2 754 448 341 107 40 chr1 22195172 22195499 -174999933 - Lx8 LINE L1 -4 7469 7121 2 754 767 260 159 12 chr1 22195507 22195846 -174999586 - Lx8 LINE L1 -7 7466 7078 2 754 232 179 71 71 chr1 22195959 22196157 -174999275 + RMER17C LTR ERVK 77 274 -136 2 754 1140 63 0 0 chr1 22197766 22197909 -174997523 - B1_Mus1 SINE Alu -5 143 1 2 754 1128 37 0 0 chr1 22198008 22198142 -174997290 + B1_Mus2 SINE Alu 1 134 -13 2 754 261 0 0 0 chr1 22198143 22198172 -174997260 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 754 378 0 0 0 chr1 22199970 22200012 -174995420 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 754 552 308 0 0 chr1 22200022 22200165 -174995267 - RSINE1 SINE B4 -19 146 4 2 754 483 332 105 30 chr1 22200557 22200945 -174994487 + MLT1G3 LTR MaLR 1 386 -183 2 754 285 29 0 0 chr1 22201140 22201174 -174994258 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 754 405 0 0 0 chr1 22201174 22201218 -174994214 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 754 186 43 0 0 chr1 22201532 22201555 -174993877 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2 754 360 328 84 91 chr1 22203211 22203496 -174991936 + RMER15 LTR ERVL 275 557 -18 2 754 256 203 85 0 chr1 22204506 22204624 -174990808 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 754 219 36 0 0 chr1 22205658 22205686 -174989746 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 754 655 251 148 44 chr1 22205757 22206095 -174989337 - L1MA8 LINE L1 -320 5971 5599 2 754 462 256 25 17 chr1 22206450 22206569 -174988863 + RLTR23 LTR ERV1 311 430 0 2 754 1036 289 43 32 chr1 22206703 22207078 -174988354 + MTEa LTR MaLR 1 379 0 2 754 189 0 0 0 chr1 22207419 22207440 -174987992 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 754 323 282 164 14 chr1 22207658 22207877 -174987555 + L1MD LINE L1 3722 3973 -2173 2 754 882 157 0 0 chr1 22207924 22208058 -174987374 + B1_Mus1 SINE Alu 2 135 -13 2 754 221 0 35 0 chr1 22208058 22208087 -174987345 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 754 21090 87 23 2 chr1 22208146 22211907 -174983525 + L1Md_F LINE L1 306 4148 -1735 2 754 1374 106 0 0 chr1 22211905 22212093 -174983339 + L1Md_F2 LINE L1 5969 6156 -426 2 754 22 0 0 0 chr1 22212145 22212167 -174983265 + AT_rich Low_complexity Low_complexity 1 22 0 2 754 532 309 72 10 chr1 22212258 22212451 -174982981 + B3 SINE B2 2 206 -10 2 754 673 372 97 16 chr1 22212842 22213222 -174982210 + Arthur1 DNA Tip100 118 528 -3419 2 754 1146 151 61 29 chr1 22213253 22213533 -174981899 + Lx9 LINE L1 7350 7638 -6 2 754 2344 223 36 8 chr1 22213723 22214224 -174981208 + Lx6 LINE L1 6941 7455 -5 2 754 327 321 114 8 chr1 22214243 22214375 -174981057 + Arthur1 DNA Tip100 651 796 -3151 2 754 552 296 14 36 chr1 22214676 22214972 -174980460 + L1M2 LINE L1 5402 5683 -496 2 754 581 327 26 7 chr1 22214972 22215126 -174980306 + RSINE1 SINE B4 9 165 0 2 754 241 205 12 71 chr1 22215200 22215284 -174980148 - Lx8 LINE L1 -1 7472 7394 2 754 222 37 0 0 chr1 22215288 22215315 -174980117 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 2 754 357 105 0 66 chr1 22215322 22215383 -174980049 - HAL1-3A_ME LINE L1 -846 2012 1956 2 754 3073 30 8 0 chr1 22215408 22215777 -174979655 + L1Md_F3 LINE L1 6199 6570 -14 2 754 216 0 0 0 chr1 22215800 22215824 -174979608 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 754 266 0 29 0 chr1 22215825 22215859 -174979573 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 754 1828 278 174 24 chr1 22215874 22216191 -174979241 - Lx8 LINE L1 -153 7320 6953 2 754 387 0 0 0 chr1 22216191 22216234 -174979198 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 754 1828 278 174 24 chr1 22216234 22216746 -174978686 - Lx8 LINE L1 -521 6952 6367 2 754 21 89 0 0 chr1 22217277 22217333 -174978099 + AT_rich Low_complexity Low_complexity 1 56 0 2 754 680 172 62 15 chr1 22217454 22217584 -174977848 + B1_Mur1 SINE Alu 13 148 -1 2 754 830 276 138 5 chr1 22218029 22218168 -174977264 - Lx9 LINE L1 -6 7638 7459 2 754 378 0 0 0 chr1 22218168 22218210 -174977222 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 754 830 276 138 5 chr1 22218210 22218460 -174976972 - Lx9 LINE L1 -186 7458 7198 2 754 1783 66 15 19 chr1 22218600 22218863 -174976569 - Lx3_Mus LINE L1 0 7009 6748 2 754 28 0 0 0 chr1 22219084 22219112 -174976320 + AT_rich Low_complexity Low_complexity 1 28 0 2 754 192 125 0 0 chr1 22219148 22219180 -174976252 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 754 459 273 50 0 chr1 22219181 22219320 -174976112 - B1F SINE Alu -2 147 2 2 754 234 0 0 0 chr1 22219758 22219784 -174975648 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 754 41275 16 1 6 chr1 22220901 22227098 -174968334 - L1Md_A LINE L1 0 6582 421 2 754 1612 244 82 16 chr1 22227206 22227607 -174967825 + RLTR20C LTR ERVK 4 434 -100 2 754 330 91 0 0 chr1 22227607 22227662 -174967770 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 754 1612 244 82 16 chr1 22227662 22227747 -174967685 + RLTR20C LTR ERVK 435 521 -13 2 754 232 185 17 100 chr1 22228180 22228240 -174967192 - RLTR13B2 LTR ERVK -700 122 68 2 754 760 258 45 54 chr1 22228555 22228776 -174966656 - Lx5 LINE L1 0 7050 6832 2 754 971 251 130 47 chr1 22228789 22229128 -174966304 - RLTR11A LTR ERVK -161 367 1 2 754 775 140 107 0 chr1 22229199 22229349 -174966083 + URR1B DNA MER1_type 59 224 -1 2 754 24 0 0 0 chr1 22230276 22230300 -174965132 + AT_rich Low_complexity Low_complexity 1 24 0 2 754 263 329 68 56 chr1 22230369 22230530 -174964902 - Charlie10b DNA MER1_type -79 163 1 2 754 338 0 0 23 chr1 22231217 22231260 -174964172 + (GTGTG)n Simple_repeat Simple_repeat 1 42 0 2 754 348 77 0 0 chr1 22231260 22231312 -174964120 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 754 528 269 75 114 chr1 22231343 22231624 -174963808 - B4A SINE B4 -18 274 5 3 754 1729 153 19 149 chr1 22232336 22232712 -174962720 - ORR1A4 LTR MaLR -2 327 1 3 754 831 254 219 38 chr1 22232816 22233135 -174962297 + MTEb LTR MaLR 3 379 0 3 754 22 0 0 0 chr1 22233389 22233411 -174962021 + AT_rich Low_complexity Low_complexity 1 22 0 3 754 304 266 9 44 chr1 22233801 22233915 -174961517 + T-rich Low_complexity Low_complexity 4 113 0 3 754 284 368 71 68 chr1 22234707 22235016 -174960416 - RLTR25B LTR ERVK -716 312 3 3 754 1079 253 151 9 chr1 22235218 22235537 -174959895 - MTE2b LTR MaLR -4 375 12 3 754 414 0 0 0 chr1 22235832 22235878 -174959554 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 754 543 188 0 0 chr1 22237519 22237636 -174957796 + GA-rich Low_complexity Low_complexity 3 119 0 3 754 2507 81 144 3 chr1 22237694 22238054 -174957378 + IAPLTR2a LTR ERVK 1 411 0 3 754 1442 206 150 3 chr1 22238372 22238698 -174956734 + ORR1D1 LTR MaLR 1 374 0 3 754 192 394 35 53 chr1 22240135 22240304 -174955128 + L2 LINE L2 637 802 -2617 3 754 1436 236 50 88 chr1 22244206 22244731 -174950701 - RLTR16 LTR ERVK 0 505 1 3 754 847 321 29 4 chr1 22245977 22246258 -174949174 + B4 SINE B4 1 288 -4 3 754 286 256 0 13 chr1 22246423 22246502 -174948930 - MER63B DNA AcHobo -3 433 356 3 754 591 15 0 0 chr1 22246508 22246576 -174948856 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 754 561 322 84 23 chr1 22246628 22247069 -174948363 + L1M4c LINE L1 1365 1832 -4552 3 754 519 336 45 0 chr1 22247198 22247332 -174948100 + RSINE1 SINE B4 2 141 -24 3 754 222 330 108 74 chr1 22247332 22247401 -174948031 + B3 SINE B2 1 210 -6 3 754 747 251 82 72 chr1 22247632 22247950 -174947482 - RMER17C LTR ERVK -3 407 87 3 754 225 0 0 0 chr1 22247950 22247975 -174947457 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 3 754 1439 12 0 6 chr1 22248075 22248245 -174947187 + (GGAGA)n Simple_repeat Simple_repeat 1 169 0 3 754 432 55 0 0 chr1 22249033 22249088 -174946344 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 754 1215 63 7 0 chr1 22250182 22250324 -174945108 - B1_Mm SINE Alu 0 147 5 3 754 696 193 34 23 chr1 22250961 22251136 -174944296 + RMER17C LTR ERVK 1 177 -233 3 754 1305 35 0 0 chr1 22251412 22251557 -174943875 + B1_Mus1 SINE Alu 2 146 -2 3 754 216 0 0 0 chr1 22251560 22251584 -174943848 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 754 475 319 143 27 chr1 22251618 22251876 -174943556 + B4A SINE B4 5 292 0 3 754 895 250 84 80 chr1 22253808 22254279 -174941153 - RMER2 LTR ERV1 -27 540 1 3 754 406 274 37 47 chr1 22255028 22255135 -174940297 + PB1D10 SINE Alu 3 108 -9 3 754 255 292 14 27 chr1 22255175 22255249 -174940183 + ID4 SINE ID 2 74 -9 3 754 189 351 0 17 chr1 22255347 22255405 -174940027 - MIRb SINE MIR -21 247 191 3 754 255 31 0 0 chr1 22256245 22256277 -174939155 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 754 320 326 40 40 chr1 22257451 22257601 -174937831 - MER5A1 DNA MER1_type -16 150 1 3 754 492 268 93 31 chr1 22257816 22257978 -174937454 + B3A SINE B2 9 180 -18 3 754 381 288 47 112 chr1 22258496 22258711 -174936721 + MLT1C LTR MaLR 257 457 -10 3 754 21 0 0 0 chr1 22258758 22258779 -174936653 + GC_rich Low_complexity Low_complexity 1 21 0 3 754 396 276 64 16 chr1 22260334 22260457 -174934975 - MTEa LTR MaLR -118 261 133 3 754 342 162 44 0 chr1 22260457 22260525 -174934907 - RLTR24 LTR ERV1 0 529 459 3 754 300 83 0 0 chr1 22260525 22260573 -174934859 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 754 7229 46 2 1 chr1 22260575 22261449 -174933983 - L1Md_F2 LINE L1 -5 6577 5703 3 754 397 239 208 0 chr1 22263484 22263643 -174931789 + MER53 DNA hAT 2 193 0 3 754 559 317 67 69 chr1 22264145 22264640 -174930792 - Lx8 LINE L1 -13 7460 6967 3 754 1146 271 45 45 chr1 22264632 22265077 -174930355 - L1_Mur3 LINE L1 -1940 3940 3496 3 754 1773 252 209 40 chr1 22265104 22265867 -174929565 - Lx8 LINE L1 -7 7466 6575 3 754 1022 238 23 115 chr1 22265964 22266089 -174929343 - Lx9 LINE L1 0 7644 7520 3 754 216 0 0 0 chr1 22266089 22266113 -174929319 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 754 1022 238 23 115 chr1 22266113 22266414 -174929018 - Lx9 LINE L1 -125 7519 7257 3 754 911 186 5 16 chr1 22266728 22266905 -174928527 + Lx5 LINE L1 918 1092 -5994 3 754 185 0 40 0 chr1 22266905 22266930 -174928502 + (CAAGA)n Simple_repeat Simple_repeat 5 30 0 3 754 4460 166 28 33 chr1 22266946 22267896 -174927536 + Lx5 LINE L1 1203 2148 -3729 3 754 245 29 0 29 chr1 22267919 22267954 -174927478 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 754 6649 191 34 19 chr1 22267956 22270332 -174925100 + Lx5 LINE L1 4665 7047 -3 3 754 646 281 55 16 chr1 22270406 22270771 -174924661 - L1M2 LINE L1 -2809 3334 2956 3 754 1125 217 12 30 chr1 22270773 22271106 -174924326 - RMER17C LTR ERVK 0 410 84 3 754 511 197 5 38 chr1 22271132 22271317 -174924115 + GA-rich Low_complexity Low_complexity 2 180 0 3 754 693 245 24 68 chr1 22271332 22271411 -174924021 - RMER17C LTR ERVK -157 253 189 3 754 1151 107 6 0 chr1 22271411 22271589 -174923843 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 754 716 0 0 12 chr1 22271597 22271682 -174923750 + (GAGAA)n Simple_repeat Simple_repeat 4 87 0 3 754 693 248 27 72 chr1 22271682 22271929 -174923503 - RMER17C LTR ERVK -418 391 6 3 754 516 310 27 82 chr1 22271929 22272065 -174923367 - L1_Mur3 LINE L1 -2962 2885 2737 3 754 4425 19 0 0 chr1 22272065 22272538 -174922894 - L1Md_T LINE L1 -1 6581 6109 3 754 516 295 21 81 chr1 22272538 22272842 -174922590 - L1_Mur3 LINE L1 -3144 2736 2449 3 754 394 93 0 0 chr1 22272942 22272996 -174922436 - L1_Mus4 LINE L1 -163 6473 6420 3 754 514 100 0 12 chr1 22272996 22273077 -174922355 + L1_Mus4 LINE L1 6550 6629 -7 3 754 3199 56 200 9 chr1 22273102 22273532 -174921900 + RLTR1B LTR ERV1 1 512 0 3 754 3515 139 101 19 chr1 22274144 22274788 -174920644 + Lx4B LINE L1 6356 7052 -6 3 754 225 217 93 35 chr1 22275217 22275303 -174920129 - Lx9 LINE L1 -24 7620 7530 3 754 375 60 0 0 chr1 22275343 22275393 -174920039 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 754 228 35 0 0 chr1 22277703 22277732 -174917700 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 754 218 164 0 18 chr1 22277915 22277971 -174917461 + A-rich Low_complexity Low_complexity 5 59 0 3 754 435 38 0 0 chr1 22278207 22278260 -174917172 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 754 675 82 56 12 chr1 22279562 22279722 -174915710 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 3 754 226 164 67 27 chr1 22279740 22279815 -174915617 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 3 754 707 259 96 5 chr1 22280849 22281047 -174914385 + B3 SINE B2 1 216 0 3 754 266 224 30 0 chr1 22281437 22281504 -174913928 + (CGTG)n Simple_repeat Simple_repeat 1 69 0 3 754 807 181 28 0 chr1 22281925 22282069 -174913363 + B1_Mus1 SINE Alu 1 148 0 3 755 1729 255 63 125 chr1 22283191 22284047 -174911385 + RLTR22_Mur LTR ERVK 1 803 -1045 3 755 354 255 51 68 chr1 22284191 22284309 -174911123 + RMER12 LTR ERVK 1104 1219 -103 3 755 416 19 19 0 chr1 22284580 22284633 -174910799 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 755 386 288 164 23 chr1 22284647 22284775 -174910657 - RSINE1 SINE B4 -17 148 3 3 755 6184 57 4 0 chr1 22285305 22286072 -174909360 - L1_Mus1 LINE L1 0 6567 5798 3 755 4514 85 3 2 chr1 22286076 22286714 -174908718 + L1_Mus1 LINE L1 5123 5761 -122 3 755 465 124 0 50 chr1 22288864 22288884 -174906548 + C-rich Low_complexity Low_complexity 98 117 0 3 755 1013 83 0 37 chr1 22288884 22289071 -174906361 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 3 755 465 124 0 50 chr1 22289071 22289169 -174906263 + C-rich Low_complexity Low_complexity 6 97 0 3 755 278 152 17 0 chr1 22289162 22289221 -174906211 + T-rich Low_complexity Low_complexity 2 61 0 3 755 521 259 130 14 chr1 22289594 22289817 -174905615 + Lx8 LINE L1 7207 7455 -18 3 755 181 315 13 40 chr1 22290375 22290451 -174904981 - L2a LINE L2 -162 3264 3191 3 755 4689 112 52 5 chr1 22290632 22291367 -174904065 + RMER12 LTR ERVK 1 769 -553 3 755 468 0 0 0 chr1 22291367 22291419 -174904013 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 755 480 35 0 0 chr1 22291434 22291492 -174903940 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 3 755 424 237 41 0 chr1 22291508 22291605 -174903827 + RMER12 LTR ERVK 1185 1285 -37 3 755 261 57 0 0 chr1 22293120 22293155 -174902277 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 755 182 37 0 36 chr1 22293191 22293219 -174902213 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 755 248 195 65 0 chr1 22293251 22293328 -174902104 + Lx9 LINE L1 7561 7642 -2 3 755 229 245 107 54 chr1 22293337 22293449 -174901983 + MT2B2 LTR ERVL 152 269 -315 3 755 433 291 94 8 chr1 22293352 22293480 -174901952 + ID_B1 SINE B4 85 223 -1 3 755 933 107 0 0 chr1 22293674 22293814 -174901618 + (TG)n Simple_repeat Simple_repeat 1 140 0 3 755 25 51 0 0 chr1 22293895 22293934 -174901498 + AT_rich Low_complexity Low_complexity 1 39 0 3 755 497 312 88 5 chr1 22295152 22295345 -174900087 - B3 SINE B2 -7 209 1 3 755 209 222 0 16 chr1 22295711 22295775 -174899657 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 755 615 303 45 58 chr1 22295794 22296018 -174899414 - RMER2 LTR ERV1 -16 551 331 3 755 620 265 110 61 chr1 22296292 22296537 -174898895 - B4A SINE B4 -22 270 14 3 755 208 169 38 25 chr1 22296598 22296677 -174898755 + GA-rich Low_complexity Low_complexity 2 81 0 3 755 378 0 0 0 chr1 22297636 22297678 -174897754 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 755 327 282 106 44 chr1 22297787 22298048 -174897384 + MLT1C LTR MaLR 1 285 -105 3 755 255 438 56 50 chr1 22298858 22299019 -174896413 + MER115 DNA Tip100 124 285 -408 3 755 733 278 21 134 chr1 22299638 22299831 -174895601 + B4 SINE B4 2 181 -111 4 755 3062 88 5 9 chr1 22299831 22300269 -174895163 - L1_Mus4 LINE L1 0 6636 6201 4 755 733 278 21 134 chr1 22300269 22300403 -174895029 + B4 SINE B4 182 292 0 4 755 201 74 0 0 chr1 22300427 22300454 -174894978 + (CG)n Simple_repeat Simple_repeat 2 28 0 4 755 234 0 0 0 chr1 22300454 22300479 -174894953 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 755 753 93 0 0 chr1 22302310 22302417 -174893015 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 755 291 277 0 15 chr1 22302617 22302683 -174892749 - B3A SINE B2 -133 65 1 4 755 297 366 105 37 chr1 22302713 22303008 -174892424 + MLT2C1 LTR ERVL 78 392 -5 4 755 204 204 0 0 chr1 22303395 22303439 -174891993 + CT-rich Low_complexity Low_complexity 6 49 0 4 755 216 0 0 0 chr1 22303694 22303718 -174891714 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 755 576 210 13 77 chr1 22303801 22303956 -174891476 + MTC-int LTR MaLR 1112 1256 -2 4 755 2074 163 85 5 chr1 22303958 22304346 -174891086 + MTC LTR MaLR 1 419 -2 4 755 479 138 11 0 chr1 22305996 22306083 -174889349 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 755 225 191 24 0 chr1 22307160 22307202 -174888230 + GA-rich Low_complexity Low_complexity 1 43 0 4 755 291 157 0 0 chr1 22307874 22307925 -174887507 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 755 663 290 81 77 chr1 22307926 22308187 -174887245 - B4A SINE B4 0 292 31 4 755 219 186 0 0 chr1 22308319 22308362 -174887070 + (CATA)n Simple_repeat Simple_repeat 2 44 0 4 755 414 0 0 0 chr1 22309121 22309167 -174886265 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 755 731 272 24 6 chr1 22309180 22309350 -174886082 - B3A SINE B2 -19 179 7 4 755 750 236 75 10 chr1 22310010 22310211 -174885221 - B3 SINE B2 -2 214 1 4 755 306 312 83 0 chr1 22311317 22311426 -174884006 + B4A SINE B4 2 119 -173 4 755 227 333 45 28 chr1 22311450 22311474 -174883958 + RLTR21 LTR ERVK 1067 1089 -483 4 755 408 20 0 0 chr1 22311474 22311523 -174883909 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 755 227 333 45 28 chr1 22311523 22311677 -174883755 + RLTR21 LTR ERVK 1090 1247 -325 4 755 297 0 0 0 chr1 22311730 22311763 -174883669 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 755 339 295 62 80 chr1 22312363 22312525 -174882907 + HAL1-3A_ME LINE L1 2281 2439 -419 4 755 21 36 0 0 chr1 22313641 22313669 -174881763 + AT_rich Low_complexity Low_complexity 1 28 0 4 755 398 229 130 69 chr1 22314013 22314144 -174881288 + ID_B1 SINE B4 80 218 -6 4 755 222 37 0 0 chr1 22314172 22314199 -174881233 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 4 755 185 0 0 39 chr1 22314203 22314229 -174881203 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 755 761 170 84 16 chr1 22314787 22314978 -174880454 + Lx6 LINE L1 2817 3020 -2860 4 755 302 202 135 0 chr1 22314996 22315085 -174880347 + Lx6 LINE L1 4368 4468 -1412 4 755 6054 199 63 39 chr1 22315085 22317660 -174877772 + Lx6 LINE L1 4412 7123 -337 4 755 1317 78 0 0 chr1 22317660 22317839 -174877593 + (CCTA)n Simple_repeat Simple_repeat 1 179 0 4 755 6054 232 55 65 chr1 22317839 22317896 -174877536 + Lx6 LINE L1 7124 7128 -332 4 755 1350 67 0 0 chr1 22317896 22318074 -174877358 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 4 755 6054 232 55 65 chr1 22318074 22318438 -174876994 + Lx6 LINE L1 7129 7459 -1 4 755 270 312 64 11 chr1 22318716 22318810 -174876622 + MIR SINE MIR 51 149 -113 4 755 7878 5 0 0 chr1 22318836 22319738 -174875694 + L1Md_T LINE L1 5715 6582 0 4 755 479 228 34 68 chr1 22320220 22320366 -174875066 - ID_B1 SINE B4 0 224 84 4 755 360 0 0 0 chr1 22320512 22320552 -174874880 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 755 187 245 0 20 chr1 22320933 22320983 -174874449 + MIRc SINE MIR 200 248 -20 4 755 330 26 0 0 chr1 22321781 22321820 -174873612 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 755 415 236 0 0 chr1 22322063 22322152 -174873280 + MTD LTR MaLR 1 89 -330 4 755 2029 206 34 17 chr1 22322176 22322590 -174872842 - MTC LTR MaLR 0 421 1 4 755 1785 241 66 14 chr1 22324463 22325220 -174870212 + Lx7 LINE L1 5414 6242 -1454 4 755 1895 262 44 19 chr1 22325216 22325810 -174869622 + Lx7 LINE L1 6803 7411 -285 4 755 330 26 0 0 chr1 22325824 22325863 -174869569 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 755 1230 34 0 0 chr1 22326001 22326147 -174869285 + B1_Mus2 SINE Alu 2 147 0 4 755 198 0 0 0 chr1 22326147 22326169 -174869263 + (A)n Simple_repeat Simple_repeat 1 22 0 4 755 227 323 138 52 chr1 22326516 22326748 -174868684 - Cheshire DNA MER1_type -2118 302 51 4 755 509 0 0 16 chr1 22326997 22327059 -174868373 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 755 228 67 0 0 chr1 22327228 22327258 -174868174 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 4 755 180 329 46 23 chr1 22327962 22328049 -174867383 + MIR SINE MIR 174 262 0 4 755 1362 257 52 18 chr1 22328348 22328733 -174866699 + Lx5 LINE L1 6634 7031 -19 4 755 207 0 0 0 chr1 22328733 22328756 -174866676 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 4 755 252 137 0 0 chr1 22328825 22328876 -174866556 + (T)n Simple_repeat Simple_repeat 1 51 0 4 755 23 33 0 0 chr1 22330103 22330133 -174865299 + AT_rich Low_complexity Low_complexity 1 30 0 4 755 838 108 250 0 chr1 22330274 22330422 -174865010 + B2_Mm2 SINE B2 1 185 -10 4 755 465 277 171 47 chr1 22330862 22331055 -174864377 + ID_B1 SINE B4 2 218 -6 4 755 483 242 135 16 chr1 22330935 22331061 -174864371 + B1F SINE Alu 9 149 0 4 755 234 0 0 0 chr1 22331126 22331152 -174864280 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 755 2637 88 53 18 chr1 22331244 22331637 -174863795 + MTB_Mm LTR MaLR 1 407 0 4 755 25 0 0 0 chr1 22332845 22332870 -174862562 + AT_rich Low_complexity Low_complexity 1 25 0 4 755 49 43 0 0 chr1 22333909 22333979 -174861453 + AT_rich Low_complexity Low_complexity 1 70 0 4 755 425 167 42 0 chr1 22334290 22334386 -174861046 - L1Md_A LINE L1 -1 6581 6482 4 755 375 23 0 0 chr1 22334534 22334578 -174860854 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 755 342 0 0 0 chr1 22334578 22334615 -174860817 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 755 708 191 30 0 chr1 22334806 22334937 -174860495 + B1_Mur3 SINE Alu 9 143 -6 4 755 530 250 13 34 chr1 22334976 22335125 -174860307 - RSINE1 SINE B4 -17 148 3 4 755 610 227 119 16 chr1 22336783 22336964 -174858468 - B3 SINE B2 -11 187 1 4 755 1143 157 96 42 chr1 22337000 22337260 -174858172 + Lx4B LINE L1 6753 7026 -32 4 755 687 238 7 47 chr1 22337387 22337537 -174857895 - B1_Mur1 SINE Alu -5 144 1 4 755 271 247 12 49 chr1 22338058 22338139 -174857293 - ID4_ SINE ID -4 79 2 4 755 522 0 0 0 chr1 22338182 22338240 -174857192 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 755 1420 217 100 9 chr1 22338374 22338704 -174856728 + Lx6 LINE L1 7099 7458 -2 4 755 586 261 63 37 chr1 22338917 22339108 -174856324 - B4 SINE B4 -12 280 85 4 755 344 302 12 0 chr1 22339601 22339687 -174855745 - B4A SINE B4 -200 92 6 4 755 935 190 0 0 chr1 22339906 22340069 -174855363 + Lx5 LINE L1 6724 6886 -164 4 755 2115 214 63 60 chr1 22340684 22341235 -174854197 + Lx7 LINE L1 6363 6915 -781 4 755 816 270 103 4 chr1 22341400 22341653 -174853779 + Lx7 LINE L1 6925 7202 -494 4 755 781 164 14 7 chr1 22341655 22341802 -174853630 - RLTR14 LTR ERV1 -234 148 1 4 755 1069 220 46 0 chr1 22341938 22342179 -174853253 + RLTR14 LTR ERV1 90 341 -41 4 755 1431 224 123 28 chr1 22342200 22342632 -174852800 + Lx7 LINE L1 7224 7696 0 4 755 2935 137 52 45 chr1 22342862 22343419 -174852013 + RLTR31_Mm LTR ERVK 1 561 0 4 755 219 312 27 55 chr1 22343609 22343622 -174851810 - 7SLRNA srpRNA srpRNA -170 144 132 4 755 194 0 39 0 chr1 22343622 22343648 -174851784 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 755 1016 29 9 2 chr1 22343648 22343780 -174851652 - B1_Mus1 SINE Alu -12 136 4 4 755 488 213 9 36 chr1 22344051 22344163 -174851269 + B1_Mur3 SINE Alu 24 132 -17 4 755 444 208 0 0 chr1 22344174 22344270 -174851162 + GA-rich Low_complexity Low_complexity 1 96 0 4 755 251 202 226 0 chr1 22344370 22344454 -174850978 + L1M4 LINE L1 5534 5636 -542 4 755 619 300 108 39 chr1 22344440 22344985 -174850447 + L1MB7 LINE L1 5580 6162 -22 4 755 1186 55 0 14 chr1 22345475 22345623 -174849809 - B1_Mus2 SINE Alu 0 147 2 4 755 231 36 0 0 chr1 22346190 22346218 -174849214 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 755 301 225 91 23 chr1 22346793 22346925 -174848507 - L1M5 LINE L1 -1717 4429 4289 4 755 379 276 19 88 chr1 22347216 22347375 -174848057 - B1F SINE Alu -1 148 1 4 755 567 0 0 0 chr1 22348049 22348112 -174847320 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 755 252 59 0 0 chr1 22348112 22348146 -174847286 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 755 23 0 0 0 chr1 22348330 22348353 -174847079 + AT_rich Low_complexity Low_complexity 1 23 0 4 755 890 76 22 15 chr1 22348631 22348765 -174846667 - B1_Mus1 SINE Alu 0 148 14 4 755 573 308 7 0 chr1 22349436 22349579 -174845853 - RSINE1 SINE B4 -16 149 6 4 755 576 42 0 0 chr1 22349737 22349808 -174845624 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 755 572 316 52 26 chr1 22350001 22350193 -174845239 - B4 SINE B4 -60 232 36 4 755 298 260 98 84 chr1 22350154 22350297 -174845135 - B1_Mur2 SINE Alu -2 147 3 4 755 206 174 29 0 chr1 22350708 22350777 -174844655 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 755 441 252 0 0 chr1 22350802 22350921 -174844511 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 4 755 456 305 25 55 chr1 22350923 22351124 -174844308 + B3A SINE B2 2 196 -2 4 755 22 56 0 0 chr1 22351129 22351165 -174844267 + AT_rich Low_complexity Low_complexity 1 36 0 4 755 33 66 0 0 chr1 22351177 22351238 -174844194 + AT_rich Low_complexity Low_complexity 1 61 0 4 755 523 305 139 21 chr1 22352699 22352937 -174842495 + B4 SINE B4 8 273 -19 4 755 397 301 0 0 chr1 22353607 22353710 -174841722 + MTEb LTR MaLR 34 136 -223 4 755 783 198 8 0 chr1 22353714 22353840 -174841592 + ETnERV2-int LTR ERVK 7070 7196 -210 4 755 573 292 11 6 chr1 22354276 22354455 -174840977 + CT-rich Low_complexity Low_complexity 1 180 0 5 755 806 141 7 0 chr1 22354456 22354598 -174840834 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 5 755 332 181 56 0 chr1 22354598 22354670 -174840762 + CT-rich Low_complexity Low_complexity 4 79 0 5 755 579 229 79 55 chr1 22354670 22354898 -174840534 + MTEb LTR MaLR 149 379 0 4 755 2042 106 80 6 chr1 22355166 22355480 -174839952 + Lx2 LINE L1 6658 6994 -3 5 755 4487 81 29 24 chr1 22356205 22357071 -174838361 - RLTR13B4 LTR ERVK 0 893 1 5 755 25 0 0 0 chr1 22357145 22357170 -174838262 + AT_rich Low_complexity Low_complexity 1 25 0 5 755 2492 305 98 31 chr1 22357666 22358934 -174836498 + Lx8 LINE L1 6052 7404 -69 5 755 488 352 20 25 chr1 22359260 22359458 -174835974 - B3A SINE B2 0 198 2 5 755 434 367 25 20 chr1 22359458 22359640 -174835792 - B4A SINE B4 -64 228 46 5 755 1685 202 19 8 chr1 22360135 22360500 -174834932 - MTB_Mm LTR MaLR -23 384 16 5 755 1141 62 14 0 chr1 22360755 22360900 -174834532 + B1_Mus2 SINE Alu 1 147 0 5 755 209 57 29 0 chr1 22360903 22360938 -174834494 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 5 755 226 292 15 0 chr1 22361340 22361405 -174834027 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 755 607 234 146 5 chr1 22361419 22361604 -174833828 - B3 SINE B2 -5 211 1 5 755 187 93 23 23 chr1 22362706 22362750 -174832682 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 755 1144 43 14 0 chr1 22362956 22363097 -174832335 - B1_Mm SINE Alu -4 143 1 5 755 252 0 0 0 chr1 22363977 22364005 -174831427 + (T)n Simple_repeat Simple_repeat 1 28 0 5 755 1351 18 0 0 chr1 22364104 22364311 -174831121 - L1Md_T LINE L1 0 6582 6420 5 755 414 67 0 0 chr1 22364311 22364326 -174831106 + (T)n Simple_repeat Simple_repeat 1 15 0 5 755 24 21 0 60 chr1 22364471 22364521 -174830911 + AT_rich Low_complexity Low_complexity 1 47 0 5 755 1647 31 0 0 chr1 22366014 22366207 -174829225 + B2_Mm1a SINE B2 1 193 0 5 755 234 62 0 0 chr1 22366230 22366262 -174829170 + (A)n Simple_repeat Simple_repeat 1 32 0 5 755 273 81 0 0 chr1 22366285 22366322 -174829110 + tRNA-Phe-TTY tRNA tRNA 2 38 -38 5 755 21 57 0 0 chr1 22367172 22367207 -174828225 + AT_rich Low_complexity Low_complexity 1 35 0 5 755 484 326 1 70 chr1 22367226 22367438 -174827994 - B3A SINE B2 -9 207 10 5 755 461 276 93 33 chr1 22367739 22367889 -174827543 - RSINE1 SINE B4 -2 163 5 5 755 375 23 0 0 chr1 22369403 22369447 -174825985 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 755 282 73 0 0 chr1 22370599 22370640 -174824792 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 755 729 181 147 7 chr1 22371305 22371455 -174823977 - MTD LTR MaLR -53 366 196 5 755 3980 55 2 2 chr1 22371471 22371967 -174823465 - L1Md_T LINE L1 -1 6581 6086 5 755 1928 106 87 3 chr1 22373052 22373364 -174822068 - Lx2 LINE L1 -2 6995 6658 5 755 22 35 0 0 chr1 22373422 22373451 -174821981 + AT_rich Low_complexity Low_complexity 1 29 0 5 755 33 43 0 0 chr1 22373477 22373524 -174821908 + AT_rich Low_complexity Low_complexity 1 47 0 5 755 2886 161 160 6 chr1 22374096 22374405 -174821027 + RMER6D LTR ERVK 1 368 -352 5 755 420 20 0 0 chr1 22374405 22374454 -174820978 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 755 2886 161 160 6 chr1 22374454 22374768 -174820664 + RMER6D LTR ERVK 369 720 0 5 755 441 0 0 0 chr1 22374808 22374857 -174820575 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 755 329 269 37 118 chr1 22374873 22375008 -174820424 - RSINE1 SINE B4 -37 128 5 5 755 369 278 0 85 chr1 22375195 22375313 -174820119 - B3A SINE B2 0 198 91 5 755 233 119 24 0 chr1 22375441 22375483 -174819949 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 755 2481 228 11 25 chr1 22375578 22376137 -174819295 + Lx5 LINE L1 6480 7030 -20 5 755 180 0 0 0 chr1 22376137 22376157 -174819275 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 5 755 503 236 45 32 chr1 22376544 22376712 -174818720 + B3 SINE B2 20 206 -10 5 755 3095 159 53 30 chr1 22377157 22377779 -174817653 + Lx4B LINE L1 6419 7054 -4 5 755 181 218 35 52 chr1 22377927 22377985 -174817447 - L3 LINE CR1 -169 4320 4264 5 755 966 96 18 0 chr1 22379621 22379787 -174815645 + (TC)n Simple_repeat Simple_repeat 1 169 0 5 755 22 56 0 0 chr1 22379917 22379953 -174815479 + AT_rich Low_complexity Low_complexity 1 36 0 5 755 21 0 0 0 chr1 22379987 22380008 -174815424 + AT_rich Low_complexity Low_complexity 1 21 0 5 755 195 318 68 0 chr1 22381316 22381404 -174814028 + MIRb SINE MIR 144 237 -31 5 755 257 0 30 0 chr1 22382104 22382137 -174813295 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 755 435 19 0 0 chr1 22382767 22382819 -174812613 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 755 696 311 11 6 chr1 22382841 22383022 -174812410 - B3A SINE B2 -16 182 1 5 755 21 36 0 0 chr1 22384325 22384353 -174811079 + AT_rich Low_complexity Low_complexity 1 28 0 5 755 22 88 0 0 chr1 22385096 22385153 -174810279 + AT_rich Low_complexity Low_complexity 1 57 0 5 755 25 31 0 0 chr1 22385271 22385303 -174810129 + AT_rich Low_complexity Low_complexity 1 32 0 5 755 459 0 0 0 chr1 22386943 22386994 -174808438 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 755 190 299 44 53 chr1 22389080 22389193 -174806239 + L2a LINE L2 3315 3426 0 5 755 24 0 0 0 chr1 22391033 22391057 -174804375 + AT_rich Low_complexity Low_complexity 1 24 0 5 755 801 208 35 70 chr1 22392081 22392104 -174803328 + Lx7 LINE L1 7460 7479 -217 5 755 1069 95 0 0 chr1 22392104 22392252 -174803180 - B1_Mus1 SINE Alu 0 148 1 5 755 801 208 35 70 chr1 22392252 22392456 -174802976 + Lx7 LINE L1 7480 7679 -17 5 755 278 148 19 0 chr1 22392668 22392722 -174802710 + GA-rich Low_complexity Low_complexity 1 55 0 5 755 198 71 0 0 chr1 22396161 22396189 -174799243 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 755 35 0 0 0 chr1 22397539 22397574 -174797858 + AT_rich Low_complexity Low_complexity 1 35 0 5 755 33 0 0 0 chr1 22398255 22398288 -174797144 + AT_rich Low_complexity Low_complexity 1 33 0 5 755 1442 64 11 0 chr1 22399144 22399331 -174796101 + B2_Mm1t SINE B2 3 191 -2 5 755 41 78 0 0 chr1 22399664 22399754 -174795678 + AT_rich Low_complexity Low_complexity 1 90 0 5 755 239 82 0 99 chr1 22399874 22399955 -174795477 + T-rich Low_complexity Low_complexity 4 76 0 5 755 21 0 0 0 chr1 22402009 22402030 -174793402 + AT_rich Low_complexity Low_complexity 1 21 0 5 755 694 214 21 0 chr1 22406849 22406989 -174788443 - B1_Mur1 SINE Alu -5 144 2 5 755 4745 110 39 11 chr1 22407124 22407860 -174787572 - Lx2 LINE L1 -1 6996 6240 5 755 231 88 0 0 chr1 22409396 22409430 -174786002 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 755 288 0 0 0 chr1 22409430 22409462 -174785970 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 755 286 139 51 0 chr1 22409464 22409543 -174785889 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 5 755 209 174 0 14 chr1 22409866 22409936 -174785496 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 755 249 333 0 37 chr1 22410241 22410322 -174785110 + MER33 DNA MER1_type 246 323 -1 5 755 1167 75 0 0 chr1 22411184 22411331 -174784101 - B1_Mm SINE Alu 0 147 1 5 755 183 42 0 0 chr1 22412178 22412202 -174783230 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 5 756 28 48 0 0 chr1 22414860 22414902 -174780530 + AT_rich Low_complexity Low_complexity 1 42 0 5 756 1014 90 0 0 chr1 22417912 22418045 -174777387 - B1_Mus1 SINE Alu 0 148 16 5 756 414 0 0 0 chr1 22418056 22418102 -174777330 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 756 230 81 0 26 chr1 22418102 22418139 -174777293 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 756 525 94 0 0 chr1 22418139 22418224 -174777208 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 756 773 304 15 31 chr1 22419164 22419375 -174776057 - B4A SINE B4 -2 290 76 5 756 21 0 0 0 chr1 22420565 22420586 -174774846 + AT_rich Low_complexity Low_complexity 1 21 0 5 756 207 162 28 42 chr1 22420908 22420979 -174774453 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 5 756 4025 109 83 20 chr1 22473350 22474123 -174721309 - RLTR13C1 LTR ERVK -114 919 1 5 756 267 82 26 52 chr1 22474123 22474200 -174721232 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 756 275 0 0 28 chr1 22474310 22474346 -174721086 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 756 1096 97 0 0 chr1 22474346 22474490 -174720942 - B1_Mus1 SINE Alu -3 145 2 5 756 1988 65 0 4 chr1 22475267 22475530 -174719902 - L1_Mus2 LINE L1 0 6566 6305 5 756 294 29 0 0 chr1 22475769 22475804 -174719628 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 756 923 124 14 0 chr1 22475872 22476017 -174719415 + B1_Mus1 SINE Alu 2 148 0 5 756 3405 227 202 59 chr1 22477448 22478914 -174716518 + RLTR22_Mur LTR ERVK 1 1676 -172 5 756 365 238 99 68 chr1 22479202 22479364 -174716068 + RMER12 LTR ERVK 1145 1311 -11 5 756 1437 240 129 21 chr1 22480404 22480877 -174714555 + RMER5 LTR ERV1 11 534 0 5 756 180 300 32 32 chr1 22481085 22481147 -174714285 + L4 LINE RTE 1769 1830 -199 5 756 393 291 19 10 chr1 22481652 22481756 -174713676 - PB1D10 SINE Alu -1 116 12 5 756 961 59 43 29 chr1 22483952 22484092 -174711340 + B1_Mus1 SINE Alu 4 145 -3 5 756 276 30 0 0 chr1 22484092 22484125 -174711307 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 5 756 1121 235 56 7 chr1 22484176 22484499 -174710933 + Lx2B LINE L1 6658 6997 -3 5 756 24 0 0 0 chr1 22485082 22485106 -174710326 + AT_rich Low_complexity Low_complexity 1 24 0 5 756 306 0 0 0 chr1 22485458 22485492 -174709940 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 756 201 152 0 0 chr1 22486435 22486468 -174708964 + T-rich Low_complexity Low_complexity 3 35 0 6 756 264 30 0 0 chr1 22488678 22488711 -174706721 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 6 756 1091 69 7 7 chr1 22489047 22489193 -174706239 + B1_Mus1 SINE Alu 2 147 -1 6 756 544 329 105 20 chr1 22491914 22492162 -174703270 + MER47B DNA MER2_type 22 290 -128 6 756 379 278 72 0 chr1 22492193 22492290 -174703142 - RSINE1 SINE B4 -6 159 56 6 756 208 311 11 0 chr1 22492456 22492546 -174702886 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 756 510 17 0 0 chr1 22492546 22492605 -174702827 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 756 387 0 0 0 chr1 22492605 22492647 -174702785 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 756 4034 84 2 9 chr1 22493560 22494114 -174701318 + L1_Mus2 LINE L1 6017 6566 0 6 756 24 0 0 0 chr1 22494618 22494642 -174700790 + AT_rich Low_complexity Low_complexity 1 24 0 6 756 2226 64 30 0 chr1 22496524 22496822 -174698610 + L1_Mus1 LINE L1 5754 6060 -507 6 756 1026 144 165 0 chr1 22496991 22497185 -174698247 + URR1A DNA MER1_type 1 226 0 6 756 37 69 0 0 chr1 22497955 22498027 -174697405 + AT_rich Low_complexity Low_complexity 1 72 0 6 756 1013 331 47 24 chr1 22498373 22498927 -174696505 + Lx9 LINE L1 6902 7468 -176 6 756 480 296 132 47 chr1 22499263 22499538 -174695894 + L1MB1 LINE L1 5387 5675 -514 6 756 234 0 0 0 chr1 22499538 22499564 -174695868 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 6 756 480 296 132 47 chr1 22499564 22499759 -174695673 + L1MB1 LINE L1 5676 5897 -292 6 756 464 176 40 90 chr1 22501264 22501364 -174694068 + RLTR21 LTR ERVK 450 544 -1028 1 756 8670 91 6 15 chr1 22501367 22503555 -174691877 - L1_Mus3 LINE L1 0 6638 4471 2 756 272 297 133 18 chr1 22503555 22503668 -174691764 + B4A SINE B4 148 273 -19 3 756 1269 96 16 5 chr1 22504872 22505060 -174690372 + B2_Mm2 SINE B2 5 194 -1 4 756 5731 20 0 0 chr1 22505112 22505766 -174689666 - L1Md_A LINE L1 0 6582 5929 5 756 5358 16 0 0 chr1 22505766 22506468 -174688964 + L1Md_A LINE L1 5244 5945 -637 5 756 397 287 55 9 chr1 22507140 22507249 -174688183 + PB1D7 SINE Alu 2 115 -5 6 756 327 49 0 0 chr1 22508512 22508553 -174686879 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 756 1833 232 49 6 chr1 22509078 22509547 -174685885 + Lx5 LINE L1 6559 7047 -3 8 756 225 76 59 29 chr1 22510223 22510291 -174685141 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 9 756 183 42 0 0 chr1 22510722 22510746 -174684686 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 756 249 210 0 0 chr1 22510741 22510803 -174684629 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 756 191 116 0 44 chr1 22510817 22510862 -174684570 + (CAGAGA)n Simple_repeat Simple_repeat 1 43 0 1 756 180 0 0 0 chr1 22511266 22511286 -174684146 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 756 4309 42 6 6 chr1 22511584 22512111 -174683321 + L1Md_F3 LINE L1 6057 6583 -1 1 756 321 89 0 0 chr1 22512225 22512270 -174683162 + (T)n Simple_repeat Simple_repeat 1 45 0 1 756 531 297 7 7 chr1 22512981 22513130 -174682302 - RSINE1 SINE B4 -15 150 2 1 756 21 0 0 0 chr1 22515259 22515280 -174680152 + AT_rich Low_complexity Low_complexity 1 21 0 1 756 237 182 0 0 chr1 22515572 22515627 -174679805 + A-rich Low_complexity Low_complexity 1 55 0 1 756 1273 34 0 0 chr1 22517596 22517742 -174677690 + B1_Mus2 SINE Alu 2 147 0 1 756 3835 141 58 37 chr1 22520376 22521104 -174674328 - RMER6A LTR ERVK -13 743 1 2 756 378 0 0 0 chr1 22522351 22522393 -174673039 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 756 400 237 116 48 chr1 22523616 22523762 -174671670 + RSINE1 SINE B4 2 157 -8 2 756 396 59 0 0 chr1 22523777 22523828 -174671604 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 2 756 562 190 98 118 chr1 22524133 22524301 -174671131 - MTC LTR MaLR -67 354 190 2 756 1783 121 44 0 chr1 22524301 22524573 -174670859 - Lx2 LINE L1 -2 6995 6712 2 756 492 226 87 152 chr1 22524573 22524634 -174670798 - MTC LTR MaLR -230 189 137 2 756 682 99 199 0 chr1 22524634 22524775 -174670657 + Lx2B LINE L1 6527 6695 -305 2 756 739 205 148 14 chr1 22525722 22526007 -174669425 + ORR1D1 LTR MaLR 25 374 0 2 756 288 239 26 0 chr1 22526007 22526080 -174669352 + ORR1D1-int LTR MaLR 1 78 -1502 2 756 739 265 20 53 chr1 22526112 22526359 -174669073 + ORR1D1-int LTR MaLR 50 288 -1082 2 756 2823 176 112 4 chr1 22526344 22526904 -174668528 - ORR1B1-int LTR MaLR -887 622 2 2 756 1310 187 147 6 chr1 22526905 22527217 -174668215 - ORR1B1 LTR MaLR 0 394 39 2 756 242 327 35 0 chr1 22527710 22527823 -174667609 + Lx8 LINE L1 5804 5920 -1553 2 756 7371 72 16 5 chr1 22528220 22529542 -174665890 - L1_Mus2 LINE L1 0 6566 5236 3 756 513 0 0 0 chr1 22529542 22529599 -174665833 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 3 756 4929 107 60 1 chr1 22529599 22529759 -174665673 - L1_Mus2 LINE L1 -648 5235 5043 3 756 231 280 0 0 chr1 22529954 22530004 -174665428 - ID4 SINE ID -28 55 6 3 756 236 329 0 0 chr1 22530765 22530850 -174664582 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 756 684 327 10 30 chr1 22530851 22531063 -174664369 - B3A SINE B2 -11 205 2 3 756 370 283 111 19 chr1 22531645 22531753 -174663679 - ORR1E LTR MaLR 0 379 262 3 756 225 270 32 0 chr1 22531828 22531891 -174663541 + G-rich Low_complexity Low_complexity 5 69 0 3 756 1460 17 0 11 chr1 22531893 22532073 -174663359 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 756 419 304 60 30 chr1 22532087 22532253 -174663179 - ORR1E LTR MaLR -188 171 1 3 756 416 331 23 23 chr1 22532272 22532445 -174662987 + MTE-int LTR MaLR 1289 1461 -119 3 756 445 346 6 6 chr1 22532447 22532604 -174662828 + RSINE1 SINE B4 4 160 -5 3 756 241 338 0 0 chr1 22532604 22532675 -174662757 + (CACCAT)n Simple_repeat Simple_repeat 1 71 0 4 756 288 356 33 0 chr1 22532864 22532954 -174662478 + MTEa LTR MaLR 62 154 -225 4 756 491 251 58 47 chr1 22533130 22533333 -174662099 + MLT1B LTR MaLR 262 467 0 4 756 468 0 0 0 chr1 22535119 22535171 -174660261 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 756 858 269 124 6 chr1 22535488 22535858 -174659574 + Lx7 LINE L1 6940 7348 -348 4 756 239 231 0 0 chr1 22535907 22535959 -174659473 + GA-rich Low_complexity Low_complexity 2 53 0 4 756 294 295 25 74 chr1 22536097 22536218 -174659214 - PB1D10 SINE Alu -2 115 1 4 756 3806 146 74 10 chr1 22536511 22537188 -174658244 + RMER6D LTR ERVK 1 720 0 4 756 368 284 50 138 chr1 22537676 22537958 -174657474 + ORR1E LTR MaLR 98 354 -5 4 756 203 289 206 0 chr1 22538034 22538131 -174657301 - MIRb SINE MIR -61 207 91 4 756 24 32 0 0 chr1 22539032 22539063 -174656369 + AT_rich Low_complexity Low_complexity 1 31 0 5 756 233 128 21 0 chr1 22539844 22539891 -174655541 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 756 24 96 0 0 chr1 22540545 22540618 -174654814 + GC_rich Low_complexity Low_complexity 1 73 0 5 756 258 308 36 60 chr1 22541714 22541797 -174653635 - ID4_ SINE ID -1 82 2 5 756 486 0 0 0 chr1 22542212 22542266 -174653166 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 756 244 260 57 56 chr1 22543900 22544072 -174651360 + RLTR20B1 LTR ERVK 57 238 -289 5 94 188 270 62 16 chr1 22544379 22544443 -174650989 + L2 LINE L2 2817 2883 -536 5 757 612 0 0 0 chr1 22544478 22544546 -174650886 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 757 747 42 0 0 chr1 22544547 22544642 -174650790 - B1_Mus2 SINE Alu -6 141 47 5 757 281 269 62 25 chr1 22544584 22544664 -174650768 - RLTR25B LTR ERVK -519 509 427 5 757 1021 82 37 0 chr1 22546239 22546374 -174649058 + B1_Mus2 SINE Alu 1 140 -7 6 757 378 107 0 0 chr1 22546390 22546446 -174648986 + (A)n Simple_repeat Simple_repeat 1 56 0 6 757 446 283 46 25 chr1 22546962 22547201 -174648231 + RMER17C LTR ERVK 121 364 -46 6 757 1594 38 0 0 chr1 22547454 22547639 -174647793 - B2_Mm1t SINE B2 -7 186 2 6 757 202 194 57 28 chr1 22547971 22548077 -174647355 + (TA)n Simple_repeat Simple_repeat 2 110 0 6 757 237 65 0 0 chr1 22548314 22548345 -174647087 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 757 22 0 0 0 chr1 22549863 22549885 -174645547 + AT_rich Low_complexity Low_complexity 1 22 0 6 757 1670 191 22 8 chr1 22549980 22550349 -174645083 + Lx5 LINE L1 5873 6246 -804 6 757 585 96 0 21 chr1 22550344 22550440 -174644992 + Lx6 LINE L1 5811 5904 -1556 6 757 1063 247 22 21 chr1 22550441 22550805 -174644627 - Lx6 LINE L1 -240 7220 6944 6 757 1987 132 6 19 chr1 22550980 22551303 -174644129 + ORR1A2 LTR MaLR 1 319 -8 7 757 232 226 84 34 chr1 22551555 22551674 -174643758 - Charlie7 DNA MER1_type -46 2566 2442 7 757 2015 96 0 0 chr1 22552172 22552454 -174642978 - L1_Mus2 LINE L1 -250 6316 6035 7 757 1669 67 9 0 chr1 22552454 22552678 -174642754 + L1_Mus2 LINE L1 6341 6566 0 7 757 639 0 0 0 chr1 22552708 22552779 -174642653 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 7 757 268 286 25 38 chr1 22552791 22552871 -174642561 - ID4_ SINE ID -1 82 4 7 757 213 39 0 0 chr1 22552976 22553002 -174642430 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 757 1055 317 42 2 chr1 22553180 22553651 -174641781 + L1_Mur3 LINE L1 73 562 -7166 7 757 3372 191 72 25 chr1 22553658 22554826 -174640606 + L1_Mur3 LINE L1 887 2091 -3789 7 757 192 97 0 0 chr1 22554826 22554857 -174640575 + (CAA)n Simple_repeat Simple_repeat 2 32 0 7 757 3372 190 291 22 chr1 22554857 22555070 -174640362 + L1_Mur3 LINE L1 2092 2383 -3497 7 757 2056 186 9 17 chr1 22555070 22555420 -174640012 - ORR1B2 LTR MaLR 0 367 21 7 757 6262 167 30 27 chr1 22555467 22556505 -174638927 + L1_Mur3 LINE L1 2458 3471 -2409 7 757 216 0 0 0 chr1 22556505 22556529 -174638903 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7 757 6262 167 30 27 chr1 22556529 22556868 -174638564 + L1_Mur3 LINE L1 3472 3838 -2042 7 757 377 209 33 0 chr1 22556892 22556983 -174638449 + Lx6 LINE L1 7348 7441 -19 8 757 30 77 0 0 chr1 22557241 22557306 -174638126 + AT_rich Low_complexity Low_complexity 1 65 0 8 757 648 316 86 42 chr1 22557787 22558240 -174637192 + L1M5 LINE L1 3100 3572 -2574 8 757 3977 56 2 0 chr1 22558813 22559297 -174636135 - L1_Mus1 LINE L1 -4 6563 6079 8 757 436 170 20 10 chr1 22559398 22559499 -174635933 + CT-rich Low_complexity Low_complexity 4 105 0 8 757 1148 276 177 45 chr1 22559763 22560345 -174635087 + Lx9 LINE L1 6798 7456 -188 8 757 309 26 0 0 chr1 22560424 22560462 -174634970 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 757 305 230 10 0 chr1 22560721 22560821 -174634611 + CT-rich Low_complexity Low_complexity 2 102 0 8 757 856 152 11 0 chr1 22560837 22560942 -174634490 + polypyrimidine Low_complexity Low_complexity 74 180 0 8 757 1203 61 0 0 chr1 22560942 22561089 -174634343 - B1_Mm SINE Alu 0 147 1 8 757 856 152 11 0 chr1 22561089 22561160 -174634272 + polypyrimidine Low_complexity Low_complexity 3 73 0 9 757 207 69 0 0 chr1 22561161 22561190 -174634242 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 757 330 26 0 0 chr1 22561190 22561229 -174634203 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 757 264 336 84 21 chr1 22561234 22561377 -174634055 + MLT1A0 LTR MaLR 214 365 0 9 757 713 304 114 19 chr1 22562117 22562713 -174632719 - L1MA6 LINE L1 -27 6273 5621 9 757 639 0 0 0 chr1 22562740 22562811 -174632621 + (TTAGGG)n Simple_repeat Simple_repeat 2 72 0 9 757 931 278 105 31 chr1 22562955 22563308 -174632124 - MTEa LTR MaLR 0 379 1 9 757 385 300 146 9 chr1 22563403 22563719 -174631713 - L1MA6 LINE L1 -918 5225 4867 9 757 4767 162 74 5 chr1 22563905 22565096 -174630336 + L1_Mus1 LINE L1 184 1466 -4417 9 757 18067 110 3 97 chr1 22565096 22565900 -174629532 + L1_Mus1 LINE L1 2910 3482 -2401 9 757 306 87 0 0 chr1 22565900 22565946 -174629486 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 9 757 18067 110 3 97 chr1 22565946 22566967 -174628465 + L1_Mus1 LINE L1 3483 4435 -1448 9 757 1942 42 4 0 chr1 22566967 22567206 -174628226 + L1Md_T LINE L1 6341 6580 -2 9 757 18067 93 5 53 chr1 22567206 22569336 -174626096 + L1_Mus1 LINE L1 4436 6567 0 9 757 183 216 0 0 chr1 22569849 22569886 -174625546 + L3 LINE CR1 1244 1280 -3209 1 757 625 118 18 0 chr1 22569938 22570048 -174625384 + (GA)n Simple_repeat Simple_repeat 1 112 0 1 757 22 94 0 0 chr1 22570532 22570596 -174624836 + AT_rich Low_complexity Low_complexity 1 64 0 1 757 6275 208 75 20 chr1 22570663 22572642 -174622790 + Lx6 LINE L1 5212 7287 -173 1 757 244 272 12 12 chr1 22572724 22572806 -174622626 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 757 517 212 24 53 chr1 22572808 22572977 -174622455 - Lx9 LINE L1 -127 7517 7354 1 757 205 233 0 110 chr1 22573717 22573799 -174621633 + polypurine Low_complexity Low_complexity 4 76 0 1 757 4422 39 0 2 chr1 22573923 22574458 -174620974 + L1Md_F3 LINE L1 6051 6584 0 1 757 23 0 0 0 chr1 22574627 22574650 -174620782 + AT_rich Low_complexity Low_complexity 1 23 0 1 757 5959 52 0 1 chr1 22574650 22575389 -174620043 - L1Md_F2 LINE L1 -14 6568 5831 1 757 845 287 25 36 chr1 22575839 22576114 -174619318 + B4A SINE B4 3 274 -18 1 757 1026 78 35 0 chr1 22576523 22576665 -174618767 + B1_Mus1 SINE Alu 1 147 -1 1 757 1236 14 0 0 chr1 22576683 22576825 -174618607 + (GGGAA)n Simple_repeat Simple_repeat 4 145 0 1 757 567 190 112 0 chr1 22577564 22577680 -174617752 - B1_Mur1 SINE Alu -18 131 3 1 757 213 301 113 28 chr1 22578831 22578937 -174616495 + MIRc SINE MIR 75 189 -19 1 757 406 311 53 8 chr1 22579094 22579227 -174616205 - B1F1 SINE Alu -10 139 1 1 757 3213 109 6 28 chr1 22579447 22579954 -174615478 + Lx3B LINE L1 6475 6970 -3 1 757 393 75 0 0 chr1 22579958 22580011 -174615421 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1 757 189 325 95 12 chr1 22581287 22581371 -174614061 - MIRb SINE MIR -174 94 4 1 757 726 72 0 0 chr1 22581488 22581585 -174613847 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 757 237 98 0 0 chr1 22581731 22581772 -174613660 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 757 842 87 0 0 chr1 22584248 22584363 -174611069 - B1_Mus2 SINE Alu 0 147 33 1 757 411 73 0 0 chr1 22584609 22584664 -174610768 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 757 235 344 33 0 chr1 22584858 22584919 -174610513 + ID4_ SINE ID 2 64 -19 1 757 237 294 0 0 chr1 22585732 22585783 -174609649 - ID4_ SINE ID -10 73 23 1 757 189 0 0 0 chr1 22585944 22585965 -174609467 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 757 249 57 0 0 chr1 22585965 22586000 -174609432 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 757 519 272 39 49 chr1 22586184 22586389 -174609043 + MER58B DNA MER1_type 131 333 -8 1 757 612 62 0 0 chr1 22586985 22587065 -174608367 + B1_Mus2 SINE Alu 68 147 0 1 757 378 171 0 0 chr1 22587065 22587135 -174608297 + A-rich Low_complexity Low_complexity 1 70 0 1 757 346 244 48 48 chr1 22587185 22587353 -174608079 + RMER17C LTR ERVK 110 277 -133 1 757 201 156 0 0 chr1 22587418 22587450 -174607982 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 757 21 0 0 0 chr1 22587672 22587693 -174607739 + AT_rich Low_complexity Low_complexity 1 21 0 1 757 55 16 0 0 chr1 22588210 22588272 -174607160 + AT_rich Low_complexity Low_complexity 1 62 0 1 757 453 269 67 0 chr1 22588494 22588628 -174606804 + ID_B1 SINE B4 80 222 -2 1 757 25 31 0 0 chr1 22588664 22588696 -174606736 + AT_rich Low_complexity Low_complexity 1 32 0 1 757 495 0 0 0 chr1 22588938 22588993 -174606439 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 757 481 140 37 0 chr1 22589529 22589665 -174605767 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 1 757 219 242 15 15 chr1 22590187 22590254 -174605178 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 757 439 233 107 8 chr1 22590284 22590337 -174605095 - B4A SINE B4 -14 278 224 1 757 287 25 25 0 chr1 22590337 22590377 -174605055 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 1 757 439 233 107 8 chr1 22590377 22590444 -174604988 - B4A SINE B4 -69 223 147 1 757 391 120 46 0 chr1 22590460 22590568 -174604864 + CT-rich Low_complexity Low_complexity 2 114 0 1 757 270 0 0 0 chr1 22591045 22591075 -174604357 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1 757 258 56 0 0 chr1 22591163 22591199 -174604233 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 757 563 154 0 45 chr1 22591398 22591650 -174603782 + (CCCTAA)n Simple_repeat Simple_repeat 1 240 0 1 757 534 101 26 39 chr1 22591673 22591827 -174603605 + (CCCTAA)n Simple_repeat Simple_repeat 2 153 0 1 757 304 255 19 96 chr1 22594328 22594432 -174601000 - PB1D10 SINE Alu -13 104 9 1 757 23 0 0 0 chr1 22594639 22594662 -174600770 + AT_rich Low_complexity Low_complexity 1 23 0 1 757 373 340 54 24 chr1 22594764 22594930 -174600502 + B4 SINE B4 122 292 0 1 757 387 0 0 0 chr1 22594958 22595001 -174600431 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 757 236 240 0 0 chr1 22595005 22595055 -174600377 + G-rich Low_complexity Low_complexity 3 52 0 1 757 390 225 0 0 chr1 22595124 22595204 -174600228 + L1M4 LINE L1 5569 5648 -530 1 757 350 136 0 29 chr1 22595255 22595323 -174600109 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1 757 939 181 104 0 chr1 22595614 22595807 -174599625 - B3 SINE B2 -3 213 1 1 757 400 294 239 17 chr1 22595855 22596028 -174599404 + B4A SINE B4 1 211 -81 1 757 398 230 112 60 chr1 22596028 22596162 -174599270 + B1F2 SINE Alu 1 141 -8 1 757 400 294 239 17 chr1 22596162 22596227 -174599205 + B4A SINE B4 212 292 0 1 757 3677 89 10 2 chr1 22596784 22597301 -174598131 + L1_Mus3 LINE L1 6117 6637 -1 1 757 1244 169 0 4 chr1 22597321 22597547 -174597885 + Lx LINE L1 6429 6653 -1 1 757 22 0 0 0 chr1 22597694 22597716 -174597716 + AT_rich Low_complexity Low_complexity 1 22 0 1 757 25 90 0 0 chr1 22597774 22597841 -174597591 + AT_rich Low_complexity Low_complexity 1 67 0 1 757 225 0 0 0 chr1 22597973 22597998 -174597434 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 757 1029 97 7 0 chr1 22597998 22598142 -174597290 - B1_Mm SINE Alu -2 145 1 1 757 198 71 0 0 chr1 22598907 22598935 -174596497 + (TCC)n Simple_repeat Simple_repeat 1 28 0 1 757 510 316 28 11 chr1 22599051 22599230 -174596202 + B3A SINE B2 1 182 -16 1 757 1654 55 0 9 chr1 22599538 22599758 -174595674 - L1Md_F2 LINE L1 0 6582 6365 1 757 271 293 0 0 chr1 22601217 22601275 -174594157 + B1F1 SINE Alu 4 61 -88 1 757 192 149 0 0 chr1 22604133 22604180 -174591252 + (TTGGGG)n Simple_repeat Simple_repeat 4 50 0 1 757 403 336 9 9 chr1 22604647 22604761 -174590671 - Cheshire DNA MER1_type -2140 280 167 1 757 258 232 18 0 chr1 22604950 22605006 -174590426 - tRNA-Ala-GCY_ tRNA tRNA -14 61 5 1 757 296 312 32 0 chr1 22606069 22606162 -174589270 + PB1D10 SINE Alu 19 114 -3 1 757 351 0 0 0 chr1 22606265 22606304 -174589128 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 757 351 0 0 0 chr1 22606671 22606710 -174588722 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 757 252 100 0 0 chr1 22606710 22606749 -174588683 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 757 718 136 15 0 chr1 22608331 22608463 -174586969 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 757 7124 61 5 7 chr1 22608660 22609593 -174585839 - L1Md_F2 LINE L1 -3 6579 5668 1 757 301 0 44 22 chr1 22610205 22610250 -174585182 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 757 3947 47 0 0 chr1 22610821 22611307 -174584125 + L1Md_A LINE L1 6097 6582 0 1 757 207 162 0 0 chr1 22611584 22611621 -174583811 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 757 452 284 145 17 chr1 22612287 22612466 -174582966 + B3 SINE B2 2 203 -13 1 757 486 188 0 0 chr1 22613276 22613372 -174582060 + (TA)n Simple_repeat Simple_repeat 1 96 0 1 757 204 200 0 0 chr1 22613398 22613443 -174581989 + GA-rich Low_complexity Low_complexity 1 45 0 1 757 830 179 0 0 chr1 22614228 22614373 -174581059 + B1_Mus1 SINE Alu 4 148 0 1 757 854 105 6 56 chr1 22615930 22616091 -174579341 - L1Md_A LINE L1 0 6582 6430 1 757 225 0 0 0 chr1 22616561 22616586 -174578846 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 757 523 183 7 78 chr1 22616587 22616741 -174578691 - Lx9 LINE L1 -189 7455 7313 1 757 513 204 123 19 chr1 22616767 22616922 -174578510 + Lx9 LINE L1 6857 7027 -617 1 757 313 198 12 12 chr1 22616928 22617010 -174578422 + A-rich Low_complexity Low_complexity 2 83 0 1 757 271 296 87 0 chr1 22617025 22617140 -174578292 + Lx9 LINE L1 7166 7290 -354 1 757 240 299 0 13 chr1 22618023 22618101 -174577331 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 757 282 250 144 45 chr1 22618103 22618304 -174577128 + RLTR21 LTR ERVK 1086 1306 -266 1 757 235 269 0 0 chr1 22618304 22618356 -174577076 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 757 453 234 11 17 chr1 22618357 22618531 -174576901 + (TATG)n Simple_repeat Simple_repeat 4 176 0 1 757 214 234 0 0 chr1 22619986 22620033 -174575399 - L2b LINE L2 0 3375 3329 1 757 483 293 6 46 chr1 22620765 22620940 -174574492 + MLT1A LTR MaLR 1 168 -206 1 757 1760 181 72 14 chr1 22621634 22621982 -174573450 + MTC LTR MaLR 1 368 -53 1 757 264 330 18 36 chr1 22622201 22622311 -174573121 - AmnSINE1 SINE SINE -250 325 218 1 757 258 151 56 19 chr1 22623136 22623190 -174572242 + L2c LINE L2 3281 3336 -51 1 757 330 366 106 23 chr1 22623843 22624061 -174571371 - L3 LINE CR1 -264 4225 3990 1 757 576 326 80 22 chr1 22624426 22624737 -174570695 - MER58B DNA MER1_type -11 330 2 1 757 252 0 0 0 chr1 22625183 22625211 -174570221 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 757 1947 162 30 82 chr1 22626530 22626934 -174568498 - ORR1B1 LTR MaLR -11 383 1 1 757 186 255 0 21 chr1 22627114 22627162 -174568270 + MIRc SINE MIR 110 156 -112 1 757 352 361 114 48 chr1 22627909 22628287 -174567145 - L2 LINE L2 -623 2796 2394 2 757 210 224 0 0 chr1 22628543 22628592 -174566840 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 2 757 209 386 39 19 chr1 22629176 22629279 -174566153 + MIR SINE MIR 15 119 -143 2 757 797 287 110 55 chr1 22629467 22630068 -174565364 + Lx8 LINE L1 6809 7442 -31 2 757 21 0 0 0 chr1 22630770 22630791 -174564641 + AT_rich Low_complexity Low_complexity 1 21 0 2 757 349 302 33 21 chr1 22630969 22631186 -174564246 + CT-rich Low_complexity Low_complexity 1 219 0 2 757 369 0 0 0 chr1 22631203 22631244 -174564188 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 757 414 0 0 0 chr1 22631244 22631289 -174564143 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 757 513 307 86 13 chr1 22631292 22631444 -174563988 - B3A SINE B2 -32 166 4 2 757 392 276 67 50 chr1 22632518 22632697 -174562735 - B3A SINE B2 -15 183 2 2 757 269 355 150 40 chr1 22632785 22633032 -174562400 + LTR16C LTR ERVL 14 287 -202 2 757 582 301 89 62 chr1 22633109 22633513 -174561919 + MLT1C LTR MaLR 4 418 -49 2 757 447 19 0 0 chr1 22633657 22633709 -174561723 + (TCC)n Simple_repeat Simple_repeat 3 54 0 2 757 837 220 69 10 chr1 22633897 22634099 -174561333 - B3 SINE B2 0 216 3 2 757 279 303 26 0 chr1 22635067 22635143 -174560289 - ID4 SINE ID 0 83 6 2 757 318 206 0 0 chr1 22637147 22637220 -174558212 + A-rich Low_complexity Low_complexity 1 73 0 2 757 681 243 7 0 chr1 22637686 22637826 -174557606 - B1F SINE Alu -1 148 8 2 757 534 190 0 0 chr1 22637850 22637971 -174557461 + GA-rich Low_complexity Low_complexity 2 122 0 2 757 386 125 16 0 chr1 22638485 22638549 -174556883 + HAL1-3A_ME LINE L1 1954 2018 -840 2 757 280 239 0 0 chr1 22638549 22638620 -174556812 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 757 241 337 67 11 chr1 22638913 22639003 -174556429 + B4A SINE B4 29 123 -169 2 757 576 111 0 0 chr1 22639174 22639273 -174556159 + (CA)n Simple_repeat Simple_repeat 1 99 0 2 757 722 366 13 32 chr1 22639513 22639829 -174555603 + MTE2a LTR MaLR 65 374 -5 2 757 1041 76 0 0 chr1 22640084 22640228 -174555204 + (TCCC)n Simple_repeat Simple_repeat 4 147 0 2 757 273 307 26 26 chr1 22640247 22640364 -174555068 + RMER15 LTR ERVL 354 470 -105 2 757 199 72 23 23 chr1 22640465 22640508 -174554924 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 757 411 275 90 15 chr1 22640513 22640646 -174554786 - B1F2 SINE Alu 0 149 7 2 757 1702 156 49 26 chr1 22641649 22641991 -174553441 + RLTR11A LTR ERVK 76 440 -88 2 757 483 18 0 0 chr1 22641995 22642051 -174553381 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 757 389 324 9 0 chr1 22642066 22642177 -174553255 + MIR SINE MIR 16 127 -135 2 757 322 275 86 12 chr1 22642563 22642644 -174552788 + PB1D10 SINE Alu 24 110 -7 2 757 653 0 13 0 chr1 22643131 22643208 -174552224 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 2 757 629 81 14 35 chr1 22643212 22643353 -174552079 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 2 757 1368 225 55 8 chr1 22643361 22643728 -174551704 - Lx9 LINE L1 -34 7610 7227 2 757 7996 30 0 0 chr1 22643844 22645077 -174550355 - L1Md_T LINE L1 0 6582 5350 2 757 345 172 0 0 chr1 22645101 22645165 -174550267 + GA-rich Low_complexity Low_complexity 3 66 0 2 757 629 58 0 11 chr1 22645167 22645254 -174550178 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 2 757 3063 90 0 0 chr1 22645535 22645935 -174549497 + MTB LTR MaLR 1 400 0 2 757 474 18 0 0 chr1 22646509 22646564 -174548868 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 757 341 309 27 68 chr1 22646833 22646979 -174548453 - RSINE1 SINE B4 -10 155 16 2 757 274 320 0 103 chr1 22647799 22647886 -174547546 - B4 SINE B4 0 292 215 2 757 951 53 90 8 chr1 22647893 22648026 -174547406 - B1_Mm SINE Alu 0 147 4 2 757 260 211 48 0 chr1 22648046 22648193 -174547239 + (TA)n Simple_repeat Simple_repeat 2 155 0 2 757 666 319 70 9 chr1 22648315 22648530 -174546902 - B4 SINE B4 -64 228 1 2 757 959 230 19 10 chr1 22649267 22649473 -174545959 - B3 SINE B2 -8 208 1 2 757 444 149 0 0 chr1 22649764 22649838 -174545594 + Lx7 LINE L1 7622 7695 -1 2 757 27 49 0 0 chr1 22650030 22650071 -174545361 + AT_rich Low_complexity Low_complexity 1 41 0 2 757 371 354 44 6 chr1 22650822 22650981 -174544451 - L1MD LINE L1 -542 5817 5653 2 757 2769 105 3 0 chr1 22651067 22651458 -174543974 + MTB LTR MaLR 1 392 -8 2 757 474 208 21 0 chr1 22651469 22651565 -174543867 - Lx8 LINE L1 -213 7260 7163 2 757 246 287 33 81 chr1 22651821 22652094 -174543338 - RMER17C LTR ERVK -68 342 83 2 757 270 219 9 19 chr1 22652095 22652202 -174543230 + GA-rich Low_complexity Low_complexity 3 108 0 2 757 204 40 0 0 chr1 22652202 22652227 -174543205 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 2 757 191 119 71 0 chr1 22652524 22652566 -174542866 + T-rich Low_complexity Low_complexity 5 49 0 2 757 21 0 0 0 chr1 22652602 22652623 -174542809 + AT_rich Low_complexity Low_complexity 1 21 0 2 757 324 288 41 37 chr1 22652623 22652865 -174542567 - L1M4 LINE L1 -953 5193 4951 2 757 21 0 0 0 chr1 22652931 22652952 -174542480 + AT_rich Low_complexity Low_complexity 1 21 0 2 757 546 67 0 0 chr1 22653104 22653179 -174542253 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 757 2263 66 9 51 chr1 22653501 22653837 -174541595 + RLTRETN_Mm LTR ERVK 1 322 0 2 757 192 77 0 0 chr1 22653842 22653868 -174541564 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 757 437 322 20 14 chr1 22653928 22654076 -174541356 - B4 SINE B4 -134 158 10 2 757 423 0 0 0 chr1 22654587 22654634 -174540798 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 757 224 226 0 0 chr1 22654791 22654844 -174540588 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 757 190 371 41 20 chr1 22655950 22656096 -174539336 + MIRb SINE MIR 103 251 -17 2 757 229 241 12 12 chr1 22656102 22656182 -174539250 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 757 21 0 0 0 chr1 22656281 22656302 -174539130 + AT_rich Low_complexity Low_complexity 1 21 0 2 757 1592 210 143 11 chr1 22656311 22656745 -174538687 - Lx2B LINE L1 -8 6992 6502 2 757 518 227 15 30 chr1 22656783 22656915 -174538517 - B3 SINE B2 -86 130 1 2 757 428 319 12 64 chr1 22657974 22658145 -174537287 + RSINE1 SINE B4 4 165 0 2 757 36 0 0 0 chr1 22658389 22658425 -174537007 + AT_rich Low_complexity Low_complexity 1 36 0 2 757 279 385 0 17 chr1 22659510 22659629 -174535803 + PB1D10 SINE Alu 1 117 0 2 757 631 173 153 5 chr1 22659816 22660019 -174535413 - Lx9 LINE L1 -7 7637 7405 2 757 229 180 0 39 chr1 22660044 22660061 -174535371 + (CAAA)n Simple_repeat Simple_repeat 3 18 0 2 757 1179 68 0 0 chr1 22660061 22660207 -174535225 + B1_Mm SINE Alu 2 147 0 2 757 229 180 0 39 chr1 22660207 22660241 -174535191 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 757 204 40 0 0 chr1 22660906 22660931 -174534501 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 2 757 477 289 190 48 chr1 22661192 22661672 -174533760 - Lx9 LINE L1 -25 7619 7072 2 757 312 27 0 0 chr1 22663420 22663457 -174531975 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 757 585 0 0 0 chr1 22663793 22663858 -174531574 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 757 321 26 0 0 chr1 22663898 22663936 -174531496 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 757 1122 250 108 15 chr1 22663938 22664331 -174531101 + RLTR20A2 LTR ERVK 1 481 -97 2 757 789 41 0 0 chr1 22664331 22664428 -174531004 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 757 337 320 71 13 chr1 22664428 22664518 -174530914 + RLTR20A2 LTR ERVK 482 576 -2 2 757 226 265 126 48 chr1 22664543 22664646 -174530786 - MIRm SINE MIR -88 188 78 2 757 209 170 0 36 chr1 22665719 22665774 -174529658 + T-rich Low_complexity Low_complexity 6 58 0 2 757 2012 234 42 26 chr1 22666994 22667541 -174527891 + Lx5 LINE L1 6100 6655 -395 2 757 513 0 0 0 chr1 22667588 22667645 -174527787 + (TTA)n Simple_repeat Simple_repeat 1 57 0 2 757 443 252 78 0 chr1 22669528 22669643 -174525789 + B3 SINE B2 1 124 -92 2 757 4125 116 2 2 chr1 22669688 22670304 -174525128 - Lx2 LINE L1 -285 6712 6097 2 757 2023 127 0 9 chr1 22670313 22670630 -174524802 + Lx2 LINE L1 6684 6997 0 2 757 333 280 78 31 chr1 22670876 22671005 -174524427 + MER5A1 DNA MER1_type 18 152 -14 2 757 22 35 0 0 chr1 22672308 22672337 -174523095 + AT_rich Low_complexity Low_complexity 1 29 0 2 757 22 35 0 0 chr1 22672596 22672625 -174522807 + AT_rich Low_complexity Low_complexity 1 29 0 2 757 2496 314 20 25 chr1 22672800 22673747 -174521685 + Lx7 LINE L1 6377 7318 -378 2 757 206 167 0 23 chr1 22673798 22673841 -174521591 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 757 7514 20 0 0 chr1 22673844 22674750 -174520682 + L1Md_T LINE L1 4681 5586 -297 2 94 8056 55 0 0 chr1 22674750 22675777 -174519655 + L1Md_T LINE L1 5587 6582 0 2 758 397 361 26 26 chr1 22676076 22676227 -174519205 + RSINE1 SINE B4 15 165 0 2 758 276 100 0 0 chr1 22676235 22676275 -174519157 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 758 580 254 22 30 chr1 22676299 22676433 -174518999 - B1_Mur2 SINE Alu -6 143 11 2 758 433 371 6 34 chr1 22676433 22676475 -174518957 - ID_B1 SINE B4 -6 218 48 2 758 380 327 119 25 chr1 22676708 22676868 -174518564 + MLT1F LTR MaLR 66 240 -308 2 758 231 44 67 0 chr1 22676889 22676934 -174518498 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 758 21 0 0 0 chr1 22677205 22677226 -174518206 + AT_rich Low_complexity Low_complexity 1 21 0 2 758 213 316 116 0 chr1 22677537 22677632 -174517800 + MIR SINE MIR 10 115 -147 2 758 410 159 0 9 chr1 22677987 22678095 -174517337 + CT-rich Low_complexity Low_complexity 1 107 0 3 758 444 19 0 0 chr1 22678095 22678148 -174517284 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 758 484 245 219 0 chr1 22678869 22679020 -174516412 - B3 SINE B2 0 216 33 3 758 396 0 0 0 chr1 22679729 22679773 -174515659 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 758 239 366 51 22 chr1 22679835 22679972 -174515460 - MIR SINE MIR -114 148 8 3 758 457 336 45 49 chr1 22680016 22680263 -174515169 + LTR16B2 LTR ERVL 51 296 -166 3 758 228 274 47 12 chr1 22682397 22682482 -174512950 + L2 LINE L2 2009 2096 -1323 3 758 465 365 175 34 chr1 22682516 22682772 -174512660 + L2 LINE L2 2226 2509 -910 3 758 360 0 0 0 chr1 22682772 22682812 -174512620 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 758 465 365 175 34 chr1 22682812 22683296 -174512136 + L2 LINE L2 2510 3070 -349 3 758 4645 217 73 17 chr1 22683559 22684820 -174510612 - Lx9 LINE L1 0 7644 6314 3 758 548 248 53 88 chr1 22684949 22685175 -174510257 - Lx9 LINE L1 -1596 6048 5831 3 758 31 26 0 0 chr1 22685177 22685215 -174510217 + AT_rich Low_complexity Low_complexity 1 38 0 3 758 774 146 88 20 chr1 22686185 22686332 -174509100 - URR1A DNA MER1_type 0 226 70 3 758 364 305 38 0 chr1 22686470 22686601 -174508831 + L1MB7 LINE L1 3747 3882 -2264 3 758 23 33 0 0 chr1 22686775 22686805 -174508627 + AT_rich Low_complexity Low_complexity 1 30 0 3 758 213 39 0 0 chr1 22686894 22686920 -174508512 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 758 798 314 50 9 chr1 22686922 22687385 -174508047 + L1MB7 LINE L1 5661 6142 -42 3 758 427 107 0 26 chr1 22687851 22687928 -174507504 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 758 895 115 8 8 chr1 22689230 22689361 -174506071 + B1_Mur4 SINE Alu 19 149 -1 3 758 378 0 0 0 chr1 22689372 22689414 -174506018 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 758 1158 28 0 0 chr1 22689969 22690113 -174505319 - L1Md_A LINE L1 0 6582 6439 3 758 296 26 0 25 chr1 22690113 22690153 -174505279 + L1Md_T LINE L1 6403 6441 -141 3 758 188 274 86 114 chr1 22691418 22691558 -174503874 - L2c LINE L2 -67 3320 3185 3 758 817 159 159 24 chr1 22692496 22692695 -174502737 - B2_Mm2 SINE B2 0 216 1 3 758 424 233 22 11 chr1 22693322 22693413 -174502019 + B4 SINE B4 2 93 -199 3 758 1467 197 108 65 chr1 22693456 22693902 -174501530 + RMER4A LTR ERVK 1 465 -1 3 758 516 344 13 13 chr1 22693906 22694065 -174501367 + B4A SINE B4 130 288 -4 3 758 41 21 0 0 chr1 22694218 22694266 -174501166 + AT_rich Low_complexity Low_complexity 1 48 0 3 758 388 172 124 22 chr1 22694276 22694365 -174501067 + B3 SINE B2 4 101 -115 3 758 31 26 0 0 chr1 22694730 22694768 -174500664 + AT_rich Low_complexity Low_complexity 1 38 0 3 758 246 256 21 62 chr1 22694975 22695071 -174500361 + Lx8 LINE L1 7231 7322 -151 3 758 184 100 0 48 chr1 22695075 22695117 -174500315 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 3 758 811 201 165 0 chr1 22695854 22696048 -174499384 + URR1A DNA MER1_type 1 226 0 3 758 25 0 0 0 chr1 22696207 22696232 -174499200 + AT_rich Low_complexity Low_complexity 1 25 0 3 758 372 363 27 38 chr1 22696528 22696714 -174498718 + B4A SINE B4 109 292 0 3 758 483 315 6 83 chr1 22696836 22697016 -174498416 + B4A SINE B4 1 166 -126 3 758 213 279 53 168 chr1 22696932 22697027 -174498405 + PB1D10 SINE Alu 10 93 -24 3 758 652 183 17 17 chr1 22697029 22697207 -174498225 + GA-rich Low_complexity Low_complexity 3 180 0 3 758 249 108 0 0 chr1 22697248 22697285 -174498147 + (GGA)n Simple_repeat Simple_repeat 3 39 0 3 758 6262 85 22 2 chr1 22698513 22699428 -174496004 + L1_Mus3 LINE L1 5700 6632 -6 3 758 507 322 74 90 chr1 22699747 22700112 -174495320 + MLT1A LTR MaLR 1 368 -6 3 758 240 214 0 0 chr1 22702245 22702301 -174493131 + CT-rich Low_complexity Low_complexity 3 58 0 3 758 236 364 10 10 chr1 22702361 22702461 -174492971 + PB1D10 SINE Alu 17 116 -1 3 758 323 280 101 31 chr1 22702605 22702734 -174492698 + RSINE1 SINE B4 9 146 -19 3 758 402 338 67 8 chr1 22703400 22703534 -174491898 + RSINE1 SINE B4 7 148 -17 3 758 5107 237 66 34 chr1 22703924 22705926 -174489506 + Lx9 LINE L1 5285 7475 -169 3 758 189 0 0 0 chr1 22705926 22705947 -174489485 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 758 5107 215 83 34 chr1 22705947 22706097 -174489335 + Lx9 LINE L1 7476 7643 -1 3 758 583 189 141 0 chr1 22706134 22706325 -174489107 + Lx9 LINE L1 7427 7644 0 3 758 1165 226 71 27 chr1 22707013 22707037 -174488395 - MTD LTR MaLR 0 419 390 3 758 441 0 0 0 chr1 22707037 22707086 -174488346 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 758 1165 239 69 30 chr1 22707086 22707429 -174488003 - MTD LTR MaLR -30 391 47 3 758 363 23 0 0 chr1 22708595 22708639 -174486793 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 758 936 72 0 0 chr1 22709055 22709180 -174486252 + (GA)n Simple_repeat Simple_repeat 2 126 0 3 758 314 326 148 26 chr1 22709183 22709372 -174486060 - L1M5 LINE L1 -318 5806 5595 3 758 298 306 27 36 chr1 22709484 22709596 -174485836 + PB1D10 SINE Alu 1 111 -6 3 758 396 0 0 0 chr1 22709597 22709641 -174485791 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 3 758 462 354 27 49 chr1 22710410 22710633 -174484799 + MLT1A0 LTR MaLR 21 238 -127 3 758 507 107 0 0 chr1 22710845 22710920 -174484512 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 3 758 549 288 0 18 chr1 22711052 22711215 -174484217 - Lx8 LINE L1 -165 7308 7149 3 758 425 43 64 11 chr1 22711660 22711754 -174483678 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 3 758 249 247 0 25 chr1 22712413 22712492 -174482940 - MER53 DNA hAT -10 183 107 3 758 22 35 0 0 chr1 22712558 22712587 -174482845 + AT_rich Low_complexity Low_complexity 1 29 0 3 758 245 301 45 64 chr1 22712669 22712825 -174482607 - Lx8 LINE L1 -108 7365 7213 3 758 326 107 18 0 chr1 22713069 22713125 -174482307 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 758 417 262 127 6 chr1 22713385 22713558 -174481874 - MER63D DNA AcHobo -804 257 64 3 758 212 200 15 0 chr1 22713655 22713720 -174481712 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 758 2888 50 0 3 chr1 22714099 22714461 -174480971 - L1Md_F2 LINE L1 -12 6570 6210 3 758 966 273 5 5 chr1 22715834 22716044 -174479388 + B3 SINE B2 1 210 -6 3 758 191 336 145 16 chr1 22716263 22716511 -174478921 - L2 LINE L2 -660 2759 2480 3 758 422 227 25 0 chr1 22716742 22716861 -174478571 + (TATATG)n Simple_repeat Simple_repeat 6 127 0 3 758 22 0 0 0 chr1 22716891 22716913 -174478519 + AT_rich Low_complexity Low_complexity 1 22 0 3 758 3350 30 5 0 chr1 22717334 22717728 -174477704 + MTA_Mm LTR MaLR 1 396 0 3 758 290 299 142 73 chr1 22717785 22717873 -174477559 - Lx8 LINE L1 -1140 6333 6241 3 758 258 105 0 0 chr1 22717873 22717911 -174477521 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 3 758 290 299 142 73 chr1 22717911 22718245 -174477187 - Lx8 LINE L1 -1233 6240 5883 3 758 205 250 0 0 chr1 22718528 22718568 -174476864 + MIR SINE MIR 23 62 -200 3 758 204 40 0 0 chr1 22719467 22719492 -174475940 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 758 3035 78 2 2 chr1 22719508 22719908 -174475524 + MTB LTR MaLR 1 400 0 3 758 378 207 29 6 chr1 22720499 22720669 -174474763 + (TA)n Simple_repeat Simple_repeat 2 175 0 3 758 22 0 0 0 chr1 22721422 22721444 -174473988 + AT_rich Low_complexity Low_complexity 1 22 0 3 758 630 230 36 0 chr1 22721745 22721901 -174473531 + B3 SINE B2 28 209 -7 3 758 1156 236 119 17 chr1 22721897 22722242 -174473190 - MTD LTR MaLR -38 381 2 3 758 704 55 45 0 chr1 22722259 22722369 -174473063 + L1Md_F3 LINE L1 6470 6584 0 3 758 791 270 23 0 chr1 22722405 22722579 -174472853 + B3 SINE B2 14 191 -25 3 758 237 65 0 0 chr1 22722581 22722612 -174472820 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 3 758 925 169 0 7 chr1 22722622 22722771 -174472661 - B1_Mur2 SINE Alu -1 148 1 3 758 31 26 0 0 chr1 22722778 22722816 -174472616 + AT_rich Low_complexity Low_complexity 1 38 0 3 758 310 340 75 69 chr1 22722885 22723217 -174472215 - MLT1A0 LTR MaLR -2 363 30 3 758 180 0 0 0 chr1 22723238 22723258 -174472174 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 758 252 77 0 0 chr1 22723780 22723819 -174471613 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 758 1255 274 19 0 chr1 22723943 22724261 -174471171 - Lx5 LINE L1 -245 6805 6482 3 758 33 43 0 0 chr1 22724454 22724501 -174470931 + AT_rich Low_complexity Low_complexity 1 47 0 3 758 1023 297 72 33 chr1 22725585 22725975 -174469457 + MTD LTR MaLR 2 406 -13 3 758 262 176 87 14 chr1 22727662 22727731 -174467701 + MER54A LTR ERVL 828 901 0 3 758 313 227 125 83 chr1 22728691 22728811 -174466621 - HAL1-3A_ME LINE L1 -61 2797 2673 3 758 506 91 13 0 chr1 22728815 22728892 -174466540 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 758 7307 39 18 3 chr1 22729811 22730742 -174464690 + L1_Mus1 LINE L1 5623 6567 0 3 758 26 0 0 0 chr1 22730863 22730889 -174464543 + AT_rich Low_complexity Low_complexity 1 26 0 3 758 490 247 48 8 chr1 22730921 22731055 -174464377 + B1_Mus2 SINE Alu 1 143 -7 3 758 529 330 98 13 chr1 22731326 22731521 -174463911 + B4A SINE B4 50 260 -32 3 758 470 293 104 26 chr1 22731521 22731791 -174463641 + B4A SINE B4 2 292 0 3 758 529 330 98 13 chr1 22731791 22731819 -174463613 + B4A SINE B4 261 291 -1 3 758 327 286 29 67 chr1 22732188 22732293 -174463139 + PB1 SINE Alu 3 103 -46 3 758 245 45 0 0 chr1 22734539 22734588 -174460844 - L1_Mus1 LINE L1 -6 6561 6525 3 758 209 109 33 83 chr1 22735684 22735744 -174459688 + A-rich Low_complexity Low_complexity 5 61 0 3 758 297 291 43 31 chr1 22735924 22736048 -174459384 - B1F SINE Alu -19 129 7 3 758 284 265 119 101 chr1 22736496 22736714 -174458718 + RLTR14 LTR ERV1 154 375 -7 4 758 212 371 0 0 chr1 22737508 22737578 -174457854 + CT-rich Low_complexity Low_complexity 4 73 0 4 758 1110 63 0 7 chr1 22737984 22738127 -174457305 - B1_Mus2 SINE Alu -2 145 4 4 758 344 338 148 33 chr1 22738231 22738534 -174456898 + L2 LINE L2 2341 2678 -741 4 758 526 289 0 30 chr1 22738560 22738692 -174456740 - RSINE1 SINE B4 -24 141 14 4 758 342 332 95 32 chr1 22738692 22738882 -174456550 + L2 LINE L2 2694 2895 -524 4 758 460 310 101 48 chr1 22739586 22739793 -174455639 - B4A SINE B4 -1 291 74 4 758 570 53 0 0 chr1 22739946 22740022 -174455410 + B1_Mur4 SINE Alu 75 150 0 4 758 234 300 0 0 chr1 22740073 22740123 -174455309 + RSINE1 SINE B4 3 52 -113 4 758 602 112 0 0 chr1 22740226 22740315 -174455117 - Lx2A1 LINE L1 -994 6014 5926 4 758 3879 101 28 14 chr1 22740315 22740878 -174454554 + Lx2A1 LINE L1 6437 7007 -1 4 758 293 222 0 0 chr1 22741976 22742039 -174453393 - B3A SINE B2 -121 77 15 4 758 214 182 0 0 chr1 22744249 22744293 -174451139 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 758 354 324 9 0 chr1 22744297 22744402 -174451030 - ID_B1 SINE B4 -117 107 2 4 758 1816 212 87 4 chr1 22745425 22745908 -174449524 + Lx9 LINE L1 7120 7642 -2 4 758 328 285 39 80 chr1 22746054 22746252 -174449180 + RMER4B LTR ERVK 5 192 -274 4 758 247 288 149 30 chr1 22747988 22748156 -174447276 + RLTR9E LTR ERVK 91 278 -131 4 758 428 357 62 21 chr1 22749869 22750112 -174445320 + L4 LINE RTE 1387 1639 -390 4 758 21 36 0 0 chr1 22750517 22750545 -174444887 + AT_rich Low_complexity Low_complexity 1 28 0 4 758 553 135 0 0 chr1 22751335 22751424 -174444008 + ORR1B2 LTR MaLR 1 89 -278 4 758 709 240 36 59 chr1 22751777 22751998 -174443434 + B3 SINE B2 1 216 0 4 758 430 309 65 19 chr1 22752304 22752459 -174442973 + RSINE1 SINE B4 4 165 0 4 758 1207 88 23 0 chr1 22753867 22754038 -174441394 - B2_Mm2 SINE B2 -9 186 12 4 758 225 196 0 0 chr1 22754731 22754782 -174440650 + CT-rich Low_complexity Low_complexity 3 53 0 4 758 327 286 73 29 chr1 22754784 22754921 -174440511 - HAL1-3A_ME LINE L1 -740 2118 1976 4 758 569 40 13 0 chr1 22754922 22754998 -174440434 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 758 565 293 31 19 chr1 22754998 22755158 -174440274 - B3A SINE B2 -35 163 2 4 758 303 113 0 102 chr1 22756006 22756065 -174439367 - HAL1-3A_ME LINE L1 -830 2028 1976 4 758 705 272 56 56 chr1 22756342 22756684 -174438748 + RLTR15 LTR ERVK 1 342 -17 4 758 414 0 0 0 chr1 22756730 22756776 -174438656 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 758 345 242 44 57 chr1 22756776 22756934 -174438498 - Lx8 LINE L1 -31 7442 7287 4 758 561 333 121 26 chr1 22756992 22757445 -174437987 - L1ME1 LINE L1 -28 6151 5656 4 758 489 312 78 0 chr1 22757524 22757716 -174437716 + RMER15-int LTR ERVL 2004 2210 -2789 4 758 721 159 8 13 chr1 22757716 22757915 -174437517 + Lx2B LINE L1 5938 6137 -863 4 758 327 261 0 32 chr1 22758083 22758178 -174437254 + RMER15-int LTR ERVL 4887 4978 -21 4 758 630 39 0 0 chr1 22760292 22760369 -174435063 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 758 340 267 124 44 chr1 22760444 22760581 -174434851 - MLT1I LTR MaLR 0 411 264 4 758 230 125 21 0 chr1 22761074 22761122 -174434310 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 758 321 26 0 0 chr1 22761370 22761408 -174434024 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 4 758 2702 195 32 58 chr1 22761464 22762079 -174433353 - RMER20B LTR ERVK -24 603 5 4 758 456 300 112 75 chr1 22762665 22762873 -174432559 - ORR1E LTR MaLR -45 314 94 4 758 207 0 0 0 chr1 22762873 22762896 -174432536 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 4 758 456 300 112 75 chr1 22762896 22762982 -174432450 - ORR1E LTR MaLR -266 93 9 4 758 590 236 60 97 chr1 22763304 22763520 -174431912 + B3 SINE B2 2 209 -7 4 758 216 0 0 0 chr1 22764532 22764556 -174430876 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 4 758 394 274 67 25 chr1 22765506 22765626 -174429806 - B4A SINE B4 -42 250 126 4 758 217 291 109 76 chr1 22765530 22765649 -174429783 - B1F2 SINE Alu -6 143 21 4 758 401 185 16 16 chr1 22766752 22766878 -174428554 + (TG)n Simple_repeat Simple_repeat 2 127 0 4 758 678 282 19 13 chr1 22766879 22767037 -174428395 - RSINE1 SINE B4 0 165 7 4 758 1253 286 77 45 chr1 22767089 22767594 -174427838 + RMER5 LTR ERV1 3 523 -11 4 758 261 219 49 76 chr1 22767606 22767708 -174427724 + B4A SINE B4 100 205 -87 4 758 1126 159 114 0 chr1 22767795 22767996 -174427436 + URR1A DNA MER1_type 1 224 -2 4 758 30 27 0 0 chr1 22770601 22770638 -174424794 + AT_rich Low_complexity Low_complexity 1 37 0 4 758 461 354 12 12 chr1 22772174 22772337 -174423095 + RSINE1 SINE B4 3 165 0 4 758 358 282 0 101 chr1 22773420 22773579 -174421853 - MLT1A0 LTR MaLR -246 162 18 4 758 378 0 0 0 chr1 22773626 22773668 -174421764 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 758 1163 61 104 0 chr1 22774093 22774256 -174421176 - B2_Mm2 SINE B2 -14 181 2 4 758 337 267 86 8 chr1 22774370 22774487 -174420945 + B1F1 SINE Alu 24 149 0 4 758 228 316 0 73 chr1 22774499 22774581 -174420851 + ID4_ SINE ID 8 83 0 4 758 425 215 0 37 chr1 22774604 22774686 -174420746 + B1_Mur1 SINE Alu 44 122 -27 4 758 359 236 79 0 chr1 22774755 22774882 -174420550 - Lx7 LINE L1 -1 7695 7559 4 758 762 69 0 0 chr1 22774976 22775077 -174420355 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 4 758 303 274 144 11 chr1 22776675 22776856 -174418576 + L1MC4a LINE L1 5679 5883 -1999 4 758 21 0 0 0 chr1 22778317 22778338 -174417094 + AT_rich Low_complexity Low_complexity 1 21 0 4 758 932 306 130 12 chr1 22778536 22779122 -174416310 + Lx8 LINE L1 6814 7468 -5 4 758 283 284 0 16 chr1 22780123 22780191 -174415241 - B1F1 SINE Alu -57 63 1 4 758 227 364 61 0 chr1 22780138 22780204 -174415228 - ID_B1 SINE B4 -90 134 65 4 758 21 0 0 0 chr1 22781243 22781264 -174414168 + AT_rich Low_complexity Low_complexity 1 21 0 4 758 1141 75 0 7 chr1 22781354 22781502 -174413930 + B1_Mm SINE Alu 1 147 0 4 758 1129 289 39 54 chr1 22781667 22782208 -174413224 + MT2A LTR ERVL 1 533 0 4 758 233 277 24 0 chr1 22782656 22782739 -174412693 - L1MD3 LINE L1 -176 7819 7735 4 758 456 51 0 0 chr1 22783282 22783341 -174412091 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 758 214 368 63 0 chr1 22783347 22783442 -174411990 + L2 LINE L2 2412 2512 -907 4 758 376 304 50 68 chr1 22784530 22784752 -174410680 + L2 LINE L2 1078 1295 -2124 4 758 434 305 19 49 chr1 22784843 22785005 -174410427 + B4A SINE B4 136 292 0 4 758 290 301 192 48 chr1 22785193 22785626 -174409806 + L2 LINE L2 1467 1961 -1458 4 758 6226 85 3 11 chr1 22785660 22787084 -174408348 + L1_Mus2 LINE L1 5007 6420 -146 4 758 342 0 0 0 chr1 22787187 22787225 -174408207 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 758 235 311 169 46 chr1 22787239 22787606 -174407826 + L2 LINE L2 2233 2644 -775 4 758 725 237 74 65 chr1 22787875 22788200 -174407232 + RLTR15 LTR ERVK 1 328 -31 4 758 362 277 177 51 chr1 22788494 22788669 -174406763 - MIR SINE MIR 0 262 66 4 758 806 193 5 2 chr1 22789933 22790337 -174405095 + (TG)n Simple_repeat Simple_repeat 1 405 0 4 758 23 33 0 0 chr1 22792499 22792529 -174402903 + AT_rich Low_complexity Low_complexity 1 30 0 4 758 2661 72 42 0 chr1 22793327 22793688 -174401744 - L1_Mus1 LINE L1 -1 6566 6191 4 758 23 68 0 0 chr1 22794066 22794110 -174401322 + AT_rich Low_complexity Low_complexity 1 44 0 4 758 295 351 44 18 chr1 22794116 22794229 -174401203 - RSINE1 SINE B4 -11 154 39 4 758 405 0 0 0 chr1 22794425 22794470 -174400962 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 758 310 329 112 19 chr1 22794938 22795099 -174400333 - HAL1-3A_ME LINE L1 -397 2461 2286 4 758 457 170 0 60 chr1 22795099 22795249 -174400183 + CT-rich Low_complexity Low_complexity 4 144 0 4 758 493 139 34 28 chr1 22797251 22797429 -174398003 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 758 417 302 16 57 chr1 22797707 22797830 -174397602 - PB1D7 SINE Alu -2 118 1 4 758 391 342 95 60 chr1 22797911 22798163 -174397269 - B4A SINE B4 0 292 32 4 758 811 251 112 7 chr1 22798949 22799218 -174396214 + Lx6 LINE L1 6998 7294 -166 4 758 289 207 12 12 chr1 22799232 22799315 -174396117 + CT-rich Low_complexity Low_complexity 3 85 0 4 758 30 27 0 0 chr1 22799380 22799417 -174396015 + AT_rich Low_complexity Low_complexity 1 37 0 4 758 1981 56 0 4 chr1 22799429 22799679 -174395753 - L1_Mus1 LINE L1 0 6567 6319 4 758 185 178 22 0 chr1 22800062 22800107 -174395325 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 758 469 301 0 96 chr1 22800107 22800327 -174395105 + Lx8 LINE L1 6174 6372 -1101 4 758 353 255 65 19 chr1 22800394 22800502 -174394930 + PB1D9 SINE Alu 1 113 -7 4 758 24 32 0 0 chr1 22801384 22801415 -174394017 + AT_rich Low_complexity Low_complexity 1 31 0 4 758 260 370 27 27 chr1 22802358 22802508 -174392924 - L2 LINE L2 -974 2445 2296 4 758 446 0 19 0 chr1 22803583 22803637 -174391795 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 758 399 267 153 16 chr1 22803644 22803834 -174391598 + B3 SINE B2 1 216 0 4 758 1766 207 45 24 chr1 22803924 22804305 -174391127 - MTD LTR MaLR 0 419 31 4 758 467 208 133 23 chr1 22806119 22806247 -174389185 + B1_Mus2 SINE Alu 5 146 -1 4 759 257 0 0 29 chr1 22809178 22809212 -174386220 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 759 200 189 0 0 chr1 22810556 22810593 -174384839 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 5 759 216 0 0 0 chr1 22810751 22810775 -174384657 + (T)n Simple_repeat Simple_repeat 1 24 0 5 759 246 128 0 0 chr1 22812670 22812709 -174382723 + (CGG)n Simple_repeat Simple_repeat 1 39 0 5 759 183 64 104 21 chr1 22812905 22812953 -174382479 + (CCGGG)n Simple_repeat Simple_repeat 4 55 0 5 759 180 330 73 21 chr1 22814326 22814422 -174381010 - L3 LINE CR1 -282 4207 4107 5 759 884 114 7 0 chr1 22814841 22814981 -174380451 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 5 759 209 298 207 0 chr1 22814981 22815102 -174380330 + MIR SINE MIR 47 192 -70 5 759 597 323 11 5 chr1 22815436 22815626 -174379806 - MLT1B LTR MaLR -4 386 196 5 759 339 322 0 11 chr1 22815716 22815810 -174379622 + RSINE1 SINE B4 2 94 -71 5 759 186 43 0 0 chr1 22815821 22815844 -174379588 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 759 317 272 32 32 chr1 22815856 22815951 -174379481 - MLT1B LTR MaLR -295 95 1 5 759 226 324 114 27 chr1 22816311 22816460 -174378972 - MER103 DNA DNA -4 162 1 5 759 27 0 0 0 chr1 22816587 22816614 -174378818 + AT_rich Low_complexity Low_complexity 1 27 0 5 759 611 125 0 9 chr1 22817214 22817319 -174378113 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 759 258 81 0 0 chr1 22817319 22817356 -174378076 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 759 754 247 38 0 chr1 22817357 22817515 -174377917 - B3A SINE B2 -34 164 1 5 759 29 47 0 0 chr1 22817662 22817705 -174377727 + AT_rich Low_complexity Low_complexity 1 43 0 5 759 884 242 121 11 chr1 22819452 22819824 -174375608 - Lx9 LINE L1 -125 7519 7107 5 759 347 339 53 34 chr1 22820192 22820549 -174374883 - MLT1A0 LTR MaLR -1 364 1 5 759 462 18 0 0 chr1 22820685 22820740 -174374692 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 759 495 48 0 0 chr1 22821138 22821200 -174374232 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 759 308 347 41 0 chr1 22821579 22821700 -174373732 + L1MD2 LINE L1 5396 5521 -721 5 759 440 83 64 0 chr1 22821731 22821840 -174373592 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 759 957 301 82 20 chr1 22821840 22822183 -174373249 - ORR1D2 LTR MaLR -5 365 2 5 759 246 334 74 38 chr1 22822183 22822426 -174373006 + L1MD2 LINE L1 5544 5788 -571 5 759 4496 56 3 2 chr1 22822426 22822998 -174372434 - L1Md_F2 LINE L1 0 6582 6010 5 759 246 334 74 38 chr1 22822998 22823146 -174372286 + L1MD2 LINE L1 5789 5949 -410 5 759 198 0 0 0 chr1 22823539 22823561 -174371871 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 759 552 273 57 19 chr1 22823605 22823762 -174371670 + ORR1D1 LTR MaLR 1 163 -211 5 759 378 0 0 0 chr1 22823765 22823807 -174371625 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 759 307 188 110 24 chr1 22823807 22823889 -174371543 + ORR1D1 LTR MaLR 286 374 0 5 759 1265 86 26 11 chr1 22824369 22824558 -174370874 - L1_Mus1 LINE L1 -1 6566 6375 5 759 538 345 107 8 chr1 22824624 22824978 -174370454 - Lx8 LINE L1 -972 6724 6352 5 759 22 0 0 0 chr1 22825230 22825252 -174370180 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 21 71 0 0 chr1 22825486 22825528 -174369904 + AT_rich Low_complexity Low_complexity 1 42 0 5 759 253 275 79 55 chr1 22825528 22825655 -174369777 + LTR16A LTR ERVL 317 446 -5 5 759 612 213 0 16 chr1 22826170 22826294 -174369138 + MLT1A1 LTR MaLR 287 408 0 5 759 1320 211 70 43 chr1 22826536 22826908 -174368524 + ORR1C2 LTR MaLR 1 382 -2 5 759 323 311 0 0 chr1 22827177 22827283 -174368149 - MLT1A0 LTR MaLR -4 361 256 5 759 192 152 0 0 chr1 22827526 22827559 -174367873 + GA-rich Low_complexity Low_complexity 2 34 0 5 759 4159 196 17 56 chr1 22827710 22828640 -174366792 - Lx5 LINE L1 -3 7047 6154 5 759 339 286 37 87 chr1 22828753 22828850 -174366582 - MER3 DNA MER1_type -12 197 113 5 759 3150 163 54 79 chr1 22828850 22829558 -174365874 - RMER6C LTR ERVK 0 690 1 5 759 339 286 37 87 chr1 22829558 22829621 -174365811 - MER3 DNA MER1_type -97 112 45 5 759 917 255 35 47 chr1 22829631 22829891 -174365541 - MTEb LTR MaLR -113 266 8 5 759 2459 169 81 19 chr1 22829905 22830132 -174365300 + RLTR11A2 LTR ERVK 2 259 -268 5 759 261 0 0 0 chr1 22830132 22830161 -174365271 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 759 441 0 0 0 chr1 22830161 22830209 -174365223 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 759 2459 169 81 19 chr1 22830209 22830461 -174364971 + RLTR11A2 LTR ERVK 260 511 -16 5 759 330 188 0 0 chr1 22830461 22830525 -174364907 + RLTR11A2 LTR ERVK 464 527 0 5 759 182 294 139 78 chr1 22830590 22830719 -174364713 - L2c LINE L2 -5 3382 3246 5 759 21 0 0 0 chr1 22831194 22831215 -174364217 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 2730 96 10 10 chr1 22831256 22831646 -174363786 - MTB_Mm LTR MaLR 0 407 18 5 759 529 349 137 11 chr1 22831735 22832019 -174363413 - MER2B DNA MER2_type -16 320 1 5 759 207 0 0 0 chr1 22832283 22832306 -174363126 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 759 338 353 77 43 chr1 22833187 22833648 -174361784 + L1MCb LINE L1 1 524 -5521 5 759 252 0 0 0 chr1 22833652 22833680 -174361752 + (A)n Simple_repeat Simple_repeat 1 28 0 5 759 265 353 99 12 chr1 22833694 22834018 -174361414 + L1MCb LINE L1 569 920 -5125 5 759 297 0 0 0 chr1 22834079 22834112 -174361320 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 759 784 149 0 19 chr1 22834275 22834432 -174361000 + GA-rich Low_complexity Low_complexity 1 154 0 5 759 308 310 88 56 chr1 22834455 22834670 -174360762 + L1MCb LINE L1 1187 1408 -5343 5 759 1377 281 70 32 chr1 22834698 22835794 -174359638 + L1MCb LINE L1 2551 3688 -2876 5 759 243 0 0 0 chr1 22835852 22835879 -174359553 + (A)n Simple_repeat Simple_repeat 1 27 0 5 759 379 336 7 7 chr1 22835983 22836127 -174359305 + L1MC3 LINE L1 6398 6541 -1244 5 759 228 170 0 0 chr1 22836207 22836260 -174359172 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 759 353 264 72 0 chr1 22836361 22836486 -174358946 + L1MC3 LINE L1 6722 6855 -1027 5 759 819 319 32 61 chr1 22836657 22837001 -174358431 - MLT1A LTR MaLR -32 342 9 5 759 374 301 91 23 chr1 22837010 22837231 -174358201 + L1MC3 LINE L1 6969 7204 -581 5 759 240 206 32 0 chr1 22837252 22837315 -174358117 + L1MC3 LINE L1 7617 7681 -104 5 759 345 330 34 0 chr1 22837669 22837757 -174357675 + B4 SINE B4 83 173 -119 5 759 3366 25 10 0 chr1 22837759 22838151 -174357281 + MTA_Mm LTR MaLR 1 396 0 5 759 1158 272 81 53 chr1 22839367 22839763 -174355669 - MTD LTR MaLR -12 407 1 5 759 593 249 155 0 chr1 22839812 22839993 -174355439 - B3 SINE B2 -6 210 2 5 759 606 276 173 16 chr1 22840352 22840606 -174354826 + RMER5 LTR ERV1 38 331 -203 5 759 4046 123 0 8 chr1 22840606 22841229 -174354203 - Lx3B LINE L1 -35 6938 6321 5 759 340 310 58 111 chr1 22841232 22841439 -174353993 - B3A SINE B2 -2 196 1 5 759 28299 103 13 12 chr1 22841829 22845008 -174350424 - L1_Mus2 LINE L1 0 6566 3336 5 759 4428 8 0 12 chr1 22845008 22845507 -174349925 + MT2_Mm LTR ERVL 1 493 0 5 759 28299 111 18 13 chr1 22845507 22845610 -174349822 - L1_Mus2 LINE L1 -2548 3335 3237 5 759 1077 79 0 7 chr1 22845610 22845751 -174349681 + B1_Mm SINE Alu 1 140 -7 5 759 28299 111 18 13 chr1 22845751 22845787 -174349645 - L1_Mm LINE L1 -2647 3236 3236 5 759 1261 34 4 22 chr1 22845787 22846056 -174349376 + (GGA)n Simple_repeat Simple_repeat 1 263 0 5 759 28299 113 18 15 chr1 22846056 22848116 -174347316 - L1_Mus2 LINE L1 -2647 3236 1185 5 759 1561 103 0 17 chr1 22848116 22848353 -174347079 - L1Md_F2 LINE L1 -15 6567 6335 5 759 2797 171 7 13 chr1 22848353 22848926 -174346506 - L1_Mus2 LINE L1 -5411 1205 675 5 759 378 239 23 23 chr1 22849031 22849164 -174346268 - L1VL2 LINE L1 -6142 193 61 5 759 302 360 50 0 chr1 22849596 22849735 -174345697 - MLT1D LTR MaLR -259 246 101 5 759 410 65 0 16 chr1 22850454 22850517 -174344915 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 759 370 336 70 21 chr1 22850518 22850661 -174344771 - B3A SINE B2 -42 156 7 5 759 659 311 11 64 chr1 22850670 22851045 -174344387 + L1MB8 LINE L1 5819 6173 -5 5 759 28 29 0 0 chr1 22851075 22851110 -174344322 + AT_rich Low_complexity Low_complexity 1 35 0 5 759 32 95 0 0 chr1 22851259 22851354 -174344078 + AT_rich Low_complexity Low_complexity 1 95 0 5 759 695 303 109 63 chr1 22852207 22852551 -174342881 - ORR1E LTR MaLR 0 379 1 5 759 676 281 34 23 chr1 22852612 22852787 -174342645 - MER20 DNA MER1_type 0 219 43 5 759 381 43 0 0 chr1 22852793 22852840 -174342592 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 759 279 0 0 0 chr1 22853853 22853884 -174341548 + (T)n Simple_repeat Simple_repeat 1 31 0 5 759 297 298 57 19 chr1 22854467 22854573 -174340859 + LTR80A LTR ERVL 459 568 -15 5 759 402 292 57 0 chr1 22855201 22855307 -174340125 - PB1D10 SINE Alu 0 117 6 5 759 1001 229 11 11 chr1 22856761 22856942 -174338490 - B3 SINE B2 -34 182 2 5 759 329 218 37 49 chr1 22857400 22857482 -174337950 + L1MC1 LINE L1 9 89 -6419 5 759 295 321 131 0 chr1 22857512 22857649 -174337783 - MLT1A0 LTR MaLR 0 365 211 5 759 679 146 18 0 chr1 22857780 22857890 -174337542 - B1_Mur4 SINE Alu -25 125 14 5 759 921 283 51 59 chr1 22858020 22858395 -174337037 - ORR1D1 LTR MaLR 0 374 3 5 759 386 315 53 7 chr1 22858423 22858573 -174336859 + L1MC1 LINE L1 931 1087 -5421 5 759 255 277 102 0 chr1 22858576 22858713 -174336719 + L1MC1 LINE L1 4608 4758 -1563 5 759 760 254 39 0 chr1 22858736 22858917 -174336515 + B3 SINE B2 28 215 -1 5 759 1097 265 124 51 chr1 22858966 22860095 -174335337 + L1MC1 LINE L1 4802 6001 -507 5 759 395 176 0 11 chr1 22860139 22860231 -174335201 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 759 624 250 65 13 chr1 22860261 22860298 -174335134 - B3 SINE B2 -7 209 166 5 759 279 0 0 0 chr1 22860298 22860329 -174335103 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 759 624 255 66 26 chr1 22860329 22860469 -174334963 - B3 SINE B2 -51 165 20 5 759 646 201 13 207 chr1 22860823 22861055 -174334377 + MTD LTR MaLR 1 187 -232 5 759 6363 128 24 7 chr1 22861082 22862345 -174333087 - Lx LINE L1 0 6654 5372 5 759 7591 149 24 16 chr1 22862344 22863797 -174331635 + L1_Mur2 LINE L1 3893 5356 -521 5 759 718 204 14 7 chr1 22863849 22863992 -174331440 + MTD LTR MaLR 276 419 0 5 759 554 269 23 0 chr1 22864542 22864672 -174330760 + ETnERV2-int LTR ERVK 7070 7202 -204 5 759 190 296 192 27 chr1 22865335 22865481 -174329951 - L2a LINE L2 -4 3422 3253 5 759 346 289 84 49 chr1 22865668 22865810 -174329622 + MLT1E2 LTR MaLR 7 153 -474 5 759 279 328 223 28 chr1 22866011 22866575 -174328857 - L2a LINE L2 -508 2911 2238 5 759 910 258 37 20 chr1 22867472 22867717 -174327715 + ORR1D2 LTR MaLR 5 253 -117 5 759 540 175 29 0 chr1 22867856 22867971 -174327461 + ORR1D2 LTR MaLR 244 370 0 5 759 24 32 0 0 chr1 22867974 22868005 -174327427 + AT_rich Low_complexity Low_complexity 1 31 0 6 759 420 264 175 19 chr1 22868784 22869093 -174326339 + MER106B DNA MER1_type 689 1045 -14 6 759 30 27 0 0 chr1 22869262 22869299 -174326133 + AT_rich Low_complexity Low_complexity 1 37 0 6 759 192 77 0 0 chr1 22869450 22869476 -174325956 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 759 4204 123 27 118 chr1 22870115 22870926 -174324506 + RMER19A LTR ERVK 1 737 0 6 759 1296 303 61 3 chr1 22871873 22872250 -174323182 + MTD LTR MaLR 18 416 -3 6 759 1015 245 83 6 chr1 22872707 22873032 -174322400 + Lx9 LINE L1 7293 7642 -2 6 759 217 83 125 0 chr1 22873043 22873091 -174322341 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 6 759 555 265 21 52 chr1 22873722 22873913 -174321519 - B3A SINE B2 -12 186 2 6 759 407 325 45 81 chr1 22873924 22873991 -174321441 - L1MEe LINE L1 -3004 3142 3079 6 759 309 276 187 18 chr1 22873991 22874157 -174321275 - B3A SINE B2 -2 196 3 6 759 550 328 51 72 chr1 22874157 22874600 -174320832 - L1MEe LINE L1 -3068 3078 2651 6 759 38008 33 4 6 chr1 22874793 22881409 -174314023 - L1Md_A LINE L1 -1 6581 1 6 759 26 74 0 0 chr1 22881484 22881538 -174313894 + AT_rich Low_complexity Low_complexity 1 54 0 6 759 210 71 0 0 chr1 22881609 22881637 -174313795 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 759 1228 211 48 121 chr1 22882036 22882499 -174312933 - Lx9 LINE L1 -8 7636 7208 6 759 330 164 0 16 chr1 22882498 22882560 -174312872 + Lx9 LINE L1 7133 7193 -451 6 759 279 0 0 0 chr1 22882667 22882698 -174312734 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 759 579 225 89 55 chr1 22882717 22882952 -174312480 + L1MB1 LINE L1 5921 6163 -5 6 759 286 269 19 0 chr1 22882965 22883069 -174312363 - L1MEe LINE L1 -4525 1641 1536 6 759 269 94 38 0 chr1 22883666 22883719 -174311713 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 759 824 38 0 19 chr1 22883719 22883827 -174311605 - B1_Mus2 SINE Alu 0 147 42 6 759 318 175 0 16 chr1 22883779 22883843 -174311589 - 4.5SRNA scRNA scRNA -8 86 24 6 759 30 45 0 0 chr1 22884323 22884367 -174311065 + AT_rich Low_complexity Low_complexity 1 44 0 6 759 251 244 14 138 chr1 22884670 22884687 -174310745 + MT2B LTR ERVL 156 272 -325 6 759 471 252 77 17 chr1 22884687 22884804 -174310628 + B1_Mur1 SINE Alu 4 127 -22 6 759 193 391 27 44 chr1 22886448 22886673 -174308759 - MIR SINE MIR -37 225 5 6 759 948 282 88 7 chr1 22887678 22887974 -174307458 + MTE2a LTR MaLR 58 377 -2 6 759 713 223 51 43 chr1 22888120 22888354 -174307078 - Lx7 LINE L1 0 7696 7461 6 759 369 0 0 0 chr1 22888387 22888428 -174307004 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 759 618 266 5 36 chr1 22888458 22888653 -174306779 - Lx7 LINE L1 -263 7433 7245 6 759 523 286 106 0 chr1 22889798 22889987 -174305445 - B3 SINE B2 -7 209 1 6 759 269 109 22 0 chr1 22890136 22890182 -174305250 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 759 1119 80 17 11 chr1 22890184 22890361 -174305071 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 759 460 371 16 8 chr1 22890393 22890643 -174304789 + Lx8 LINE L1 7069 7320 -153 6 759 1348 52 0 9 chr1 22891383 22891597 -174303835 + (CA)n Simple_repeat Simple_repeat 1 211 0 6 759 223 151 0 70 chr1 22892155 22892212 -174303220 + A-rich Low_complexity Low_complexity 4 56 0 6 759 236 361 48 0 chr1 22892346 22892429 -174303003 + MER74B LTR ERVL 118 204 -418 6 759 198 0 0 0 chr1 22893029 22893051 -174302381 + (A)n Simple_repeat Simple_repeat 1 22 0 6 759 226 194 0 0 chr1 22893181 22893217 -174302215 + polypurine Low_complexity Low_complexity 2 37 0 6 759 471 233 179 8 chr1 22893434 22893568 -174301864 + RSINE1 SINE B4 2 158 -7 6 759 301 228 35 81 chr1 22893661 22893747 -174301685 + AluG_3 SINE Alu 142 221 -90 6 759 295 254 21 141 chr1 22893815 22893957 -174301475 - PB1 SINE Alu -2 125 1 6 759 516 253 87 12 chr1 22893995 22894167 -174301265 + L1MEc LINE L1 1966 2150 -4250 6 759 1341 73 0 22 chr1 22894384 22894565 -174300867 + B2_Mm2 SINE B2 2 178 -17 6 759 969 113 0 0 chr1 22894567 22894717 -174300715 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 6 759 1643 218 119 35 chr1 22894945 22895431 -174300001 - RLTR11A2 LTR ERVK 0 527 1 6 759 225 295 38 8 chr1 22895793 22895926 -174299506 + L1MEc LINE L1 2502 2638 -3681 6 759 233 284 0 10 chr1 22895927 22896023 -174299409 + L1M5 LINE L1 3416 3510 -2636 6 759 955 248 9 14 chr1 22897262 22897475 -174297957 - B3 SINE B2 0 216 5 6 759 332 325 13 19 chr1 22897476 22897633 -174297799 + HAL1 LINE L1 1553 1708 -799 6 759 230 303 51 26 chr1 22898356 22898434 -174296998 + ID4 SINE ID 3 82 -1 6 759 243 302 35 0 chr1 22898580 22898666 -174296766 - MTD LTR MaLR 0 419 331 6 759 575 236 38 153 chr1 22898662 22899008 -174296424 - RLTR15 LTR ERVK -21 338 33 6 759 1032 262 74 4 chr1 22899020 22899277 -174296155 - MTD LTR MaLR -127 292 18 6 759 2411 156 123 9 chr1 22900024 22900489 -174294943 - RLTR28 LTR ERVL -6 518 1 6 759 300 206 15 0 chr1 22900872 22900940 -174294492 - Lx8 LINE L1 -359 7114 7046 6 759 383 228 0 62 chr1 22900982 22901174 -174294258 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 759 273 299 36 36 chr1 22901198 22901309 -174294123 - RMER12 LTR ERVK -471 851 741 6 759 952 176 65 28 chr1 22902518 22902734 -174292698 - MTD LTR MaLR 0 419 196 6 759 909 28 0 0 chr1 22902745 22902853 -174292579 + (TCTCC)n Simple_repeat Simple_repeat 4 111 0 6 759 371 132 0 14 chr1 22902853 22902922 -174292510 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 6 759 1082 212 3 112 chr1 22902941 22903271 -174292161 - Lx4B LINE L1 -4 7054 6761 6 759 368 286 25 112 chr1 22903284 22903481 -174291951 - MTD LTR MaLR -239 180 1 6 759 547 289 0 0 chr1 22903481 22903601 -174291831 + ID_B1 SINE B4 84 203 -21 6 759 1328 6 13 0 chr1 22903928 22904084 -174291348 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 6 759 756 231 97 132 chr1 22904184 22904595 -174290837 + MT2A LTR ERVL 5 542 -59 6 759 657 187 0 0 chr1 22904596 22904735 -174290697 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 6 759 281 196 0 0 chr1 22904736 22904787 -174290645 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 759 3341 38 2 0 chr1 22905051 22905445 -174289987 + MTA_Mm LTR MaLR 1 395 -1 6 759 513 0 0 0 chr1 22905445 22905502 -174289930 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 759 260 178 0 0 chr1 22905502 22905547 -174289885 + MT2A LTR ERVL 489 533 0 6 759 571 179 52 35 chr1 22906857 22906973 -174288459 + MLT1A1 LTR MaLR 291 408 0 6 759 615 338 87 44 chr1 22907300 22907575 -174287857 - B4 SINE B4 0 292 6 6 759 339 277 70 75 chr1 22907849 22908048 -174287384 + B3A SINE B2 1 198 0 6 759 204 40 0 0 chr1 22908708 22908733 -174286699 + (T)n Simple_repeat Simple_repeat 1 25 0 6 759 1784 262 100 59 chr1 22908756 22909603 -174285829 - Lx9 LINE L1 -51 7593 6712 6 759 411 309 0 0 chr1 22909608 22909718 -174285714 + Lx9 LINE L1 6597 6706 -938 6 759 1530 307 93 14 chr1 22909718 22910300 -174285132 - MER97c DNA MER1_type? -440 650 23 6 759 21 71 0 0 chr1 22912501 22912543 -174282889 + AT_rich Low_complexity Low_complexity 1 42 0 6 759 213 39 0 0 chr1 22912582 22912608 -174282824 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 759 412 345 44 94 chr1 22912676 22912974 -174282458 - B4A SINE B4 -8 284 2 6 759 549 332 88 90 chr1 22913141 22913654 -174281778 + MER63C DNA AcHobo 180 691 -239 6 759 284 233 246 8 chr1 22913795 22913925 -174281507 + MER63C DNA AcHobo 770 930 0 6 759 212 0 36 0 chr1 22913935 22913963 -174281469 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 759 1182 222 51 115 chr1 22914380 22914849 -174280583 + RMER4A LTR ERVK 28 466 0 6 759 25 31 0 0 chr1 22915010 22915042 -174280390 + AT_rich Low_complexity Low_complexity 1 32 0 6 759 305 229 0 127 chr1 22915315 22915520 -174279912 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 759 5686 49 0 13 chr1 22915705 22916413 -174279019 - L1_Mus1 LINE L1 0 6567 5869 6 759 2931 95 0 0 chr1 22916413 22916824 -174278608 + L1_Mus1 LINE L1 5462 5872 -11 6 759 22 94 0 0 chr1 22917473 22917537 -174277895 + AT_rich Low_complexity Low_complexity 1 64 0 6 759 459 0 0 0 chr1 22918353 22918404 -174277028 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 759 288 345 36 0 chr1 22918405 22918570 -174276862 + L1ME3A LINE L1 6001 6171 -2 6 759 1380 309 41 13 chr1 22919930 22920464 -174274968 - Lx8 LINE L1 -709 6764 6216 6 759 191 260 0 20 chr1 22920925 22920976 -174274456 - L3 LINE CR1 -1003 3486 3437 6 759 211 275 12 12 chr1 22921460 22921541 -174273891 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 759 3741 234 67 18 chr1 22922118 22923051 -174272381 - Lx5 LINE L1 -8 7042 6065 6 759 39405 5 0 0 chr1 22923053 22929420 -174266012 - L1Md_A LINE L1 0 6582 215 6 759 234 262 0 0 chr1 22929420 22929500 -174265932 - Lx5 LINE L1 -972 6078 5999 6 759 840 213 32 5 chr1 22930271 22930460 -174264972 + RMER19C LTR ERVK 23 216 -395 6 759 202 245 19 0 chr1 22931008 22931061 -174264371 + (CTTA)n Simple_repeat Simple_repeat 4 57 0 6 759 448 320 101 7 chr1 22931082 22931230 -174264202 - B3A SINE B2 -36 162 1 6 759 269 326 0 0 chr1 22931504 22931596 -174263836 - LTR40c LTR ERVL -10 455 364 6 759 321 169 0 0 chr1 22931781 22931840 -174263592 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 759 304 273 126 9 chr1 22931872 22931983 -174263449 + MTEa LTR MaLR 7 130 -249 6 759 230 341 120 28 chr1 22931936 22932078 -174263354 + MT2A LTR ERVL 83 237 -296 6 759 267 79 0 0 chr1 22932151 22932189 -174263243 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 759 298 301 92 42 chr1 22932189 22932331 -174263101 - RSINE1 SINE B4 -14 151 3 6 759 248 374 99 6 chr1 22932333 22932505 -174262927 + MT2A LTR ERVL 283 470 -63 6 759 2293 197 63 6 chr1 22932693 22933172 -174262260 - RLTR11A2 LTR ERVK -21 506 1 6 759 216 0 0 0 chr1 22933355 22933379 -174262053 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 6 759 676 228 37 0 chr1 22933393 22933529 -174261903 - B1_Mur1 SINE Alu 0 149 9 6 759 327 49 0 0 chr1 22934028 22934069 -174261363 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 759 333 304 187 24 chr1 22934252 22934461 -174260971 + MLT1B LTR MaLR 70 312 -78 7 759 360 0 0 0 chr1 22934522 22934562 -174260870 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 759 305 361 12 49 chr1 22934997 22935160 -174260272 - B4A SINE B4 -132 160 4 7 759 562 338 83 8 chr1 22936230 22936495 -174258937 - B4A SINE B4 -6 286 2 7 759 294 184 0 0 chr1 22937098 22937174 -174258258 + A-rich Low_complexity Low_complexity 1 76 0 7 759 405 0 0 0 chr1 22937487 22937532 -174257900 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 94 609 274 20 0 chr1 22937541 22937694 -174257738 - B3A SINE B2 -42 156 1 7 760 6864 57 3 2 chr1 22939381 22940298 -174255134 + L1Md_F2 LINE L1 4669 5586 -297 7 760 7563 68 6 4 chr1 22940298 22941280 -174254152 + L1Md_F2 LINE L1 5587 6570 -12 7 760 312 119 0 0 chr1 22942896 22942955 -174252477 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 760 270 0 0 0 chr1 22943543 22943573 -174251859 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 7 760 288 0 0 0 chr1 22945230 22945262 -174250170 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 760 2226 311 64 17 chr1 22945308 22946295 -174249137 - Lx9 LINE L1 -227 7417 6385 7 760 219 217 0 0 chr1 22946303 22946363 -174249069 + (CATA)n Simple_repeat Simple_repeat 1 60 0 7 760 873 159 28 6 chr1 22947383 22947560 -174247872 + Lx LINE L1 6462 6642 -12 7 760 933 153 0 0 chr1 22948264 22948440 -174246992 + (TG)n Simple_repeat Simple_repeat 2 177 0 7 760 393 295 205 10 chr1 22948651 22948846 -174246586 + MLT1A0 LTR MaLR 131 363 -2 7 760 1789 223 14 33 chr1 22948896 22949323 -174246109 - MTD LTR MaLR 0 419 1 7 760 394 304 88 15 chr1 22949801 22949938 -174245494 - MER20 DNA MER1_type -3 216 70 7 760 252 257 14 28 chr1 22949982 22950054 -174245378 - MER20 DNA MER1_type -146 73 3 7 760 305 179 119 0 chr1 22950380 22950447 -174244985 + B2_Mm2 SINE B2 1 75 -120 7 760 324 0 0 0 chr1 22950473 22950509 -174244923 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 760 180 0 0 0 chr1 22950509 22950528 -174244904 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 760 615 161 0 17 chr1 22951291 22951411 -174244021 - Lx2 LINE L1 0 6997 6880 7 760 3193 113 95 15 chr1 22951411 22951474 -174243958 + Lx2 LINE L1 5777 5879 -1118 7 760 3633 155 94 5 chr1 22951474 22952109 -174243323 - RLTR17 LTR ERVK 0 692 1 7 760 3193 113 95 15 chr1 22952109 22952636 -174242796 + Lx2 LINE L1 5880 6414 -583 7 760 1874 191 82 13 chr1 22952728 22952809 -174242623 - Lx9 LINE L1 -2 7642 7560 7 760 1922 183 8 3 chr1 22952809 22953166 -174242266 + RLTR15 LTR ERVK 1 359 0 7 760 1874 191 82 13 chr1 22953166 22953561 -174241871 - Lx9 LINE L1 -85 7559 7134 7 760 2236 195 39 22 chr1 22953563 22953968 -174241464 - L1_Rod LINE L1 -3156 2691 2273 7 760 5720 8 0 0 chr1 22953968 22954604 -174240828 - L1Md_A LINE L1 0 6582 5947 7 760 2236 195 39 22 chr1 22954604 22954744 -174240688 - L1_Rod LINE L1 -3575 2272 2137 7 760 676 247 41 82 chr1 22954729 22954943 -174240489 - L1_Rod LINE L1 -4259 1588 1382 7 760 396 0 0 0 chr1 22954943 22954987 -174240445 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 760 2536 220 49 38 chr1 22954987 22955703 -174239729 - L1_Rod LINE L1 -4466 1381 665 7 760 3916 48 0 8 chr1 22955703 22956184 -174239248 + L1Md_F3 LINE L1 6094 6570 -14 7 760 7269 17 0 0 chr1 22956632 22957507 -174237925 + L1Md_A LINE L1 4712 5586 -297 7 760 8551 26 1 0 chr1 22957507 22958502 -174236930 + L1Md_A LINE L1 5587 6582 0 7 760 875 139 0 28 chr1 22959797 22959938 -174235494 - B1_Mus1 SINE Alu -1 147 11 7 760 476 257 30 138 chr1 22959938 22959963 -174235469 - B4 SINE B4 -67 224 77 7 760 516 260 51 18 chr1 22960460 22960716 -174234716 + MLT1B LTR MaLR 44 358 -32 7 760 252 0 0 0 chr1 22960825 22960853 -174234579 + (A)n Simple_repeat Simple_repeat 1 28 0 7 760 1061 295 61 49 chr1 22961176 22961605 -174233827 - L1MC3 LINE L1 -21 7764 7322 7 760 1345 206 96 38 chr1 22961605 22961989 -174233443 - MTC LTR MaLR 0 421 19 7 760 261 0 0 0 chr1 22961989 22962018 -174233414 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7 760 1345 206 96 38 chr1 22962018 22962031 -174233401 - MTC LTR MaLR -403 18 3 7 760 1061 295 61 49 chr1 22962031 22962418 -174233014 - L1MC3 LINE L1 -464 7321 6938 7 760 231 365 0 17 chr1 22962450 22962567 -174232865 + (CATATA)n Simple_repeat Simple_repeat 2 116 0 7 760 285 300 0 32 chr1 22962691 22962784 -174232648 + Kanga1c DNA Tc2 635 724 -5 7 760 26 0 0 0 chr1 22963295 22963321 -174232111 + AT_rich Low_complexity Low_complexity 1 26 0 7 760 23 54 0 0 chr1 22963419 22963456 -174231976 + AT_rich Low_complexity Low_complexity 1 37 0 7 760 331 274 0 31 chr1 22963538 22963636 -174231796 - PB1D10 SINE Alu -21 96 2 7 760 1091 249 131 39 chr1 22963724 22964084 -174231348 - MTD LTR MaLR -14 405 13 7 760 716 296 70 22 chr1 22964218 22964488 -174230944 + B4A SINE B4 1 283 -9 7 760 657 313 10 0 chr1 22966051 22966252 -174229180 + B3 SINE B2 1 203 -13 7 760 3384 164 153 32 chr1 22966264 22966665 -174228767 - RMER17A2 LTR ERVK 0 906 478 7 760 326 23 23 0 chr1 22966665 22966708 -174228724 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 760 3384 164 153 32 chr1 22966708 22967114 -174228318 - RMER17A2 LTR ERVK -429 477 1 7 760 4699 136 29 56 chr1 22967143 22968068 -174227364 - RMER17A-int LTR ERVK -57 1671 772 7 760 268 139 0 0 chr1 22968129 22968172 -174227260 - RMER17A-int LTR ERVK -981 747 705 7 760 405 0 0 0 chr1 22968266 22968311 -174227121 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 7 760 1656 293 70 33 chr1 22968333 22969856 -174225576 + L1_Rod LINE L1 1014 2595 -3252 7 760 256 192 0 0 chr1 22969894 22969946 -174225486 + L1_Mur2 LINE L1 2678 2729 -3151 7 760 240 227 45 0 chr1 22969949 22970037 -174225395 + L1_Mur2 LINE L1 3684 3775 -2105 7 760 832 305 56 25 chr1 22970020 22970343 -174225089 - Lx8 LINE L1 -955 6518 6186 7 760 460 338 6 0 chr1 22970471 22970631 -174224801 + Lx8 LINE L1 7072 7232 -241 7 760 550 246 0 0 chr1 22970611 22970733 -174224699 + Lx9 LINE L1 6512 6633 -1011 7 760 2777 191 49 43 chr1 22970734 22971433 -174223999 + Lx9 LINE L1 6927 7629 -15 7 760 266 193 125 50 chr1 22971640 22971760 -174223672 + L1_Mur2 LINE L1 3728 3856 -2024 7 760 239 355 71 45 chr1 22971965 22972143 -174223289 + MLT1I LTR MaLR 1 183 -284 7 760 630 291 44 37 chr1 22972143 22972414 -174223018 + B4A SINE B4 2 274 -18 7 760 230 355 71 45 chr1 22972414 22972433 -174222999 + MLT1I LTR MaLR 184 202 -265 7 760 246 32 0 0 chr1 22972436 22972467 -174222965 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 760 2183 98 12 60 chr1 22972834 22973170 -174222262 + ORR1A2 LTR MaLR 8 327 0 7 760 817 304 99 64 chr1 22973399 22973993 -174221439 - Charlie1a DNA MER1_type -12 1443 829 7 760 632 269 17 52 chr1 22974251 22974541 -174220891 + Lx9 LINE L1 7225 7504 -140 7 760 282 267 21 62 chr1 22974720 22974816 -174220616 + MLT1I LTR MaLR 320 411 0 7 760 534 16 0 0 chr1 22975256 22975319 -174220113 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 760 189 0 0 0 chr1 22975357 22975378 -174220054 + (A)n Simple_repeat Simple_repeat 1 21 0 7 760 451 266 102 19 chr1 22975540 22975697 -174219735 - MLT1D LTR MaLR -82 423 254 7 760 2704 152 68 18 chr1 22976506 22977002 -174218430 + Lx4B LINE L1 6531 7051 -7 7 760 21 36 0 0 chr1 22977002 22977030 -174218402 + AT_rich Low_complexity Low_complexity 1 28 0 7 760 635 254 41 17 chr1 22977220 22977392 -174218040 + MTD LTR MaLR 26 201 -220 7 760 3175 134 0 20 chr1 22977405 22977952 -174217480 - Lx2B LINE L1 -394 6606 6071 7 760 2393 150 5 18 chr1 22977960 22978233 -174217199 + Lx2A1 LINE L1 6619 6891 -117 7 760 4493 130 58 9 chr1 22978233 22979004 -174216428 + RMER17D2 LTR ERVK 1 809 0 7 760 2393 150 5 18 chr1 22979004 22979123 -174216309 + Lx2A1 LINE L1 6892 7006 -2 7 760 741 179 178 5 chr1 22979124 22979309 -174216123 + MTD LTR MaLR 203 419 0 7 760 526 310 12 60 chr1 22980086 22980254 -174215178 - RSINE1 SINE B4 0 165 6 7 760 453 36 0 0 chr1 22980460 22980515 -174214917 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 760 196 115 0 71 chr1 22980577 22980633 -174214799 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 7 760 1520 117 4 20 chr1 22982326 22982570 -174212862 - Lx2 LINE L1 -1 6996 6757 7 760 1624 202 52 20 chr1 22983113 22983517 -174211915 - MTD LTR MaLR 0 419 3 7 760 220 104 41 20 chr1 22983523 22983572 -174211860 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 7 760 271 254 32 0 chr1 22983984 22984047 -174211385 - ID4_ SINE ID -16 67 3 7 760 184 93 0 65 chr1 22984538 22984584 -174210848 + T-rich Low_complexity Low_complexity 1 43 0 7 760 416 288 103 22 chr1 22986080 22986304 -174209128 + MLT1D LTR MaLR 1 242 -263 7 760 205 62 94 0 chr1 22986305 22986337 -174209095 + G-rich Low_complexity Low_complexity 1 35 0 7 760 377 0 0 0 chr1 22986380 22986430 -174209002 + L1Md_T LINE L1 6532 6581 -1 7 760 636 272 125 61 chr1 22986647 22986991 -174208441 + ORR1D2 LTR MaLR 5 370 0 7 760 338 323 133 4 chr1 22987014 22987284 -174208148 + L1MC4a LINE L1 6473 6777 -1105 7 760 1010 316 10 28 chr1 22987350 22987750 -174207682 + Lx8 LINE L1 6252 6644 -829 7 760 4385 105 14 12 chr1 22988106 22988773 -174206659 - L1_Mus3 LINE L1 0 6638 5971 7 760 16022 109 20 2 chr1 22988773 22991309 -174204123 - L1_Mm LINE L1 -777 5106 2526 7 760 423 0 0 0 chr1 22991309 22991356 -174204076 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 760 1739 119 7 30 chr1 22992057 22992352 -174203080 - L1_Mus4 LINE L1 -5 6631 6344 7 760 24 53 0 0 chr1 22992358 22992396 -174203036 + AT_rich Low_complexity Low_complexity 1 38 0 7 760 2250 33 7 0 chr1 22992396 22992671 -174202761 - L1_Mus1 LINE L1 0 6567 6291 7 760 3690 57 0 0 chr1 22992671 22993145 -174202287 + L1_Mus1 LINE L1 5841 6314 -253 7 760 243 125 0 0 chr1 22993269 22993309 -174202123 + (GGA)n Simple_repeat Simple_repeat 3 42 0 7 760 1019 131 49 43 chr1 22993381 22993565 -174201867 + B2_Mm2 SINE B2 3 187 -8 7 760 510 17 0 0 chr1 22993568 22993627 -174201805 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 7 760 24 0 0 0 chr1 22994009 22994033 -174201399 + AT_rich Low_complexity Low_complexity 1 24 0 7 760 258 202 202 0 chr1 22996060 22996126 -174199306 + MIRc SINE MIR 78 158 -118 7 760 561 244 207 0 chr1 22996571 22996735 -174198697 + B3A SINE B2 1 198 0 7 760 371 279 89 79 chr1 22996867 22997069 -174198363 + MIRb SINE MIR 36 239 -29 7 760 328 360 62 16 chr1 22997197 22997389 -174198043 - MLT1L LTR MaLR -13 597 397 7 760 2727 98 10 5 chr1 22998487 22998889 -174196543 - MusHAL1 LINE L1 -2947 407 4 7 760 200 176 0 0 chr1 22998974 22999008 -174196424 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 760 31 58 0 0 chr1 23000001 23000053 -174195379 + AT_rich Low_complexity Low_complexity 1 52 0 1 760 1703 263 59 27 chr1 23000053 23000495 -174194937 - MT2A LTR ERVL -74 459 4 2 760 1945 142 94 29 chr1 23002486 23002870 -174192562 - RLTR9E LTR ERVK 0 409 1 3 760 24 32 0 0 chr1 23003162 23003193 -174192239 + AT_rich Low_complexity Low_complexity 1 31 0 4 760 25 75 0 0 chr1 23003239 23003292 -174192140 + AT_rich Low_complexity Low_complexity 1 53 0 5 760 1828 165 6 27 chr1 23003891 23004227 -174191205 - ORR1A4 LTR MaLR 0 329 1 6 760 216 0 0 0 chr1 23004230 23004254 -174191178 + (T)n Simple_repeat Simple_repeat 1 24 0 7 760 1888 154 65 23 chr1 23004256 23004287 -174191145 - RLTR17 LTR ERVK -325 367 341 8 760 2730 71 143 138 chr1 23004287 23004796 -174190636 - RLTR1B LTR ERV1 0 512 1 9 760 1888 154 65 23 chr1 23004796 23005116 -174190316 - RLTR17 LTR ERVK -352 340 1 8 760 7024 190 36 39 chr1 23005116 23006972 -174188460 - RMER3D-int LTR ERVK 0 2842 470 8 760 955 239 71 55 chr1 23007032 23007482 -174187950 - RMER3D-int LTR ERVK -1993 849 62 1 760 2883 31 0 0 chr1 23007497 23007848 -174187584 - L1Md_T LINE L1 0 5883 5533 1 760 5803 40 0 0 chr1 23007848 23008539 -174186893 + L1Md_T LINE L1 5892 6582 0 1 760 374 153 0 53 chr1 23008539 23008615 -174186817 - RMER3D-int LTR ERVK -2769 73 2 1 760 2517 153 64 7 chr1 23008616 23009037 -174186395 - RLTR17 LTR ERVK 0 692 248 1 760 987 261 87 12 chr1 23009023 23009264 -174186168 - MTD LTR MaLR -48 371 113 1 760 875 93 7 0 chr1 23009875 23010015 -174185417 + (GA)n Simple_repeat Simple_repeat 2 142 0 1 760 1981 180 44 0 chr1 23010942 23011304 -174184128 - ORR1C1 LTR MaLR 0 378 1 1 760 291 85 0 0 chr1 23011363 23011410 -174184022 + (TGG)n Simple_repeat Simple_repeat 1 47 0 1 760 666 37 0 0 chr1 23011410 23011491 -174183941 + (CTA)n Simple_repeat Simple_repeat 1 81 0 1 760 648 284 33 0 chr1 23011822 23012037 -174183395 + MER58A DNA MER1_type 1 222 -2 1 760 399 327 6 47 chr1 23012800 23012970 -174182462 + RSINE1 SINE B4 3 165 0 1 760 1105 110 28 28 chr1 23014011 23014189 -174181243 + B2_Mm1t SINE B2 2 179 -14 1 760 368 96 324 9 chr1 23014235 23014339 -174181093 + B2_Mm2 SINE B2 46 187 -8 2 760 21 0 0 0 chr1 23014572 23014593 -174180839 + AT_rich Low_complexity Low_complexity 1 21 0 2 760 294 298 58 51 chr1 23015673 23015811 -174179621 - ORR1E LTR MaLR -157 202 64 2 760 959 226 30 20 chr1 23016514 23016713 -174178719 - B3 SINE B2 -13 203 3 2 760 2271 142 23 84 chr1 23016829 23017306 -174178126 - RLTR11B LTR ERVK 0 453 6 2 760 6334 90 3 7 chr1 23017326 23018256 -174177176 - L1_Mus2 LINE L1 0 6566 5664 2 760 504 265 75 40 chr1 23019569 23019742 -174175690 + RLTR41 LTR ERV1 268 446 0 2 760 441 0 0 0 chr1 23019753 23019802 -174175630 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 760 189 0 0 0 chr1 23019802 23019822 -174175610 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 760 699 99 0 0 chr1 23019824 23019925 -174175507 + (GA)n Simple_repeat Simple_repeat 2 102 0 2 760 290 256 12 12 chr1 23020533 23020699 -174174733 + (TG)n Simple_repeat Simple_repeat 1 166 0 3 760 525 237 48 85 chr1 23020699 23020888 -174174544 - B3A SINE B2 -16 182 1 3 760 234 81 0 0 chr1 23021470 23021507 -174173925 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 3 760 609 14 0 0 chr1 23021609 23021679 -174173753 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 3 760 737 73 9 0 chr1 23021683 23021792 -174173640 + (TCTCCC)n Simple_repeat Simple_repeat 4 113 0 3 760 379 311 19 0 chr1 23021807 23021913 -174173519 - MT2A LTR ERVL -74 459 352 3 760 256 342 35 18 chr1 23023207 23023320 -174172112 - MLT1A1 LTR MaLR -292 116 2 3 760 1151 55 7 7 chr1 23023608 23023755 -174171677 + B1_Mus1 SINE Alu 2 148 0 3 760 279 0 0 0 chr1 23023759 23023790 -174171642 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 3 760 282 188 0 0 chr1 23023875 23023923 -174171509 + ID_B1 SINE B4 175 222 -2 3 760 804 285 0 5 chr1 23023983 23024177 -174171255 + B3A SINE B2 3 195 -3 4 760 240 337 23 0 chr1 23024301 23024387 -174171045 - MLT1L LTR MaLR -117 493 406 4 760 608 276 76 123 chr1 23025659 23025793 -174169639 + L1MC3 LINE L1 7145 7261 -524 4 760 240 300 60 60 chr1 23025793 23025910 -174169522 + PB1D7 SINE Alu 3 119 -1 4 760 1898 122 85 10 chr1 23025917 23026223 -174169209 + ORR1A4 LTR MaLR 1 329 0 4 760 608 276 76 123 chr1 23026223 23026254 -174169178 + L1MC3 LINE L1 7262 7291 -494 4 760 321 26 0 0 chr1 23026254 23026292 -174169140 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 760 608 276 76 123 chr1 23026292 23026489 -174168943 + L1MC3 LINE L1 7292 7501 -284 4 760 3253 19 0 3 chr1 23026489 23026867 -174168565 + L1Md_F3 LINE L1 6194 6570 -14 4 760 608 276 76 123 chr1 23026867 23027122 -174168310 + L1MC3 LINE L1 7502 7742 -43 4 760 531 289 32 49 chr1 23027136 23027393 -174168039 + MTE2b LTR MaLR 20 336 -43 4 760 563 318 79 11 chr1 23027398 23027576 -174167856 - B3A SINE B2 -2 196 7 4 760 32 26 0 0 chr1 23028230 23028269 -174167163 + AT_rich Low_complexity Low_complexity 1 39 0 4 760 414 0 0 0 chr1 23028337 23028383 -174167049 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 760 828 89 51 15 chr1 23028558 23028695 -174166737 - L1Md_F2 LINE L1 -1 6581 6440 5 760 2929 55 8 10 chr1 23028862 23029264 -174166168 - L1_Mus2 LINE L1 -579 5987 5587 5 760 4201 102 8 0 chr1 23029275 23029874 -174165558 + L1_Mus1 LINE L1 5964 6567 0 5 760 219 333 18 0 chr1 23029932 23029989 -174165443 + ID SINE ID 4 61 -163 5 760 299 85 21 0 chr1 23030029 23030076 -174165356 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 760 547 153 0 15 chr1 23030159 23030292 -174165140 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 760 272 70 23 0 chr1 23030460 23030503 -174164929 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 760 204 40 0 0 chr1 23030839 23030864 -174164568 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 760 4909 117 9 14 chr1 23030962 23031702 -174163730 + RMER19A LTR ERVK 1 737 0 5 760 307 395 37 6 chr1 23031900 23032063 -174163369 - L2a LINE L2 -232 3194 3027 6 760 315 254 34 60 chr1 23032410 23032527 -174162905 - PB1D10 SINE Alu -3 114 1 6 760 21 36 0 0 chr1 23033318 23033346 -174162086 + AT_rich Low_complexity Low_complexity 1 28 0 6 760 532 141 71 0 chr1 23033381 23033480 -174161952 + ORR1C2 LTR MaLR 1 106 -278 6 760 396 0 0 0 chr1 23033482 23033526 -174161906 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 760 393 293 0 39 chr1 23033528 23033631 -174161801 - B3A SINE B2 -42 156 58 6 760 21 0 0 0 chr1 23034220 23034241 -174161191 + AT_rich Low_complexity Low_complexity 1 21 0 6 760 376 111 14 14 chr1 23034696 23034769 -174160663 + (TCC)n Simple_repeat Simple_repeat 3 75 0 6 760 302 0 26 0 chr1 23035097 23035135 -174160297 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 760 646 311 0 0 chr1 23035266 23035414 -174160018 - RSINE1 SINE B4 -16 149 2 6 760 364 192 10 10 chr1 23035662 23035762 -174159670 + CT-rich Low_complexity Low_complexity 3 102 0 7 760 994 41 18 6 chr1 23035977 23036111 -174159321 - B1_Mm SINE Alu -1 146 27 7 760 22 56 0 0 chr1 23036870 23036906 -174158526 + AT_rich Low_complexity Low_complexity 1 36 0 7 760 204 40 0 0 chr1 23037642 23037667 -174157765 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 760 618 189 0 0 chr1 23037667 23037842 -174157590 + GA-rich Low_complexity Low_complexity 1 175 0 7 760 625 290 65 30 chr1 23037961 23038160 -174157272 - B3 SINE B2 -10 206 1 7 760 1024 173 0 6 chr1 23038768 23038942 -174156490 + RMER15 LTR ERVL 2 174 -401 7 760 515 16 16 0 chr1 23039002 23039066 -174156366 + (GA)n Simple_repeat Simple_repeat 1 65 0 7 760 958 81 0 0 chr1 23039114 23039238 -174156194 + B1_Mus1 SINE Alu 20 143 -5 7 760 180 97 0 0 chr1 23039239 23039270 -174156162 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 7 760 4810 45 3 15 chr1 23039830 23040438 -174154994 + L1Md_F2 LINE L1 5970 6570 -12 8 760 249 333 46 33 chr1 23040854 23041006 -174154426 + MIRb SINE MIR 24 177 -91 8 760 1195 48 7 0 chr1 23043065 23043211 -174152221 + B1_Mm SINE Alu 1 147 0 8 760 243 0 0 0 chr1 23043217 23043244 -174152188 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 760 569 150 10 10 chr1 23044274 23044375 -174151057 + B2_Mm2 SINE B2 81 181 -14 8 760 225 0 0 0 chr1 23044438 23044463 -174150969 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 760 1636 269 64 88 chr1 23044660 23045287 -174150145 - RLTR18 LTR ERVK -4 612 1 8 760 21 0 0 0 chr1 23045347 23045368 -174150064 + AT_rich Low_complexity Low_complexity 1 21 0 8 760 429 298 153 36 chr1 23045391 23045674 -174149758 + L1M4 LINE L1 3106 3424 -2722 8 760 1807 36 0 13 chr1 23045674 23045902 -174149530 - L1Md_F2 LINE L1 -4 6578 6354 8 760 429 298 153 36 chr1 23045902 23045983 -174149449 + L1M4 LINE L1 3425 3513 -2633 8 760 444 253 19 26 chr1 23046067 23046221 -174149211 + L1M2 LINE L1 3610 3762 -2381 9 760 306 0 0 0 chr1 23046295 23046329 -174149103 + (A)n Simple_repeat Simple_repeat 1 34 0 9 760 465 19 0 0 chr1 23046588 23046642 -174148790 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 760 492 306 120 28 chr1 23046746 23047281 -174148151 + L1M2 LINE L1 3779 4362 -1778 9 760 265 274 0 0 chr1 23047283 23047345 -174148087 + Lx9 LINE L1 7186 7247 -397 9 760 514 190 8 8 chr1 23047380 23047502 -174147930 + (TATATG)n Simple_repeat Simple_repeat 6 127 0 9 760 346 216 73 57 chr1 23047521 23047698 -174147734 + Lx9 LINE L1 7464 7643 -1 9 760 802 306 43 56 chr1 23047716 23048360 -174147072 + L1M2 LINE L1 4398 5033 -1110 9 760 575 256 70 60 chr1 23048908 23049159 -174146273 - MTEb LTR MaLR -218 161 3 9 760 355 282 126 63 chr1 23049374 23049643 -174145789 + L1MDa LINE L1 1074 1359 -5274 9 760 246 32 0 0 chr1 23050543 23050574 -174144858 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 760 21 57 0 0 chr1 23050913 23050948 -174144484 + AT_rich Low_complexity Low_complexity 1 35 0 9 760 329 320 8 31 chr1 23051101 23051230 -174144202 + RSINE1 SINE B4 2 127 -38 9 760 464 81 14 0 chr1 23051256 23051330 -174144102 + (CATA)n Simple_repeat Simple_repeat 4 78 0 1 760 274 268 12 24 chr1 23051442 23051526 -174143906 + PB1D10 SINE Alu 28 110 -7 1 760 348 354 62 0 chr1 23052468 23052646 -174142786 + L1M5 LINE L1 2297 2485 -3661 1 760 899 266 57 37 chr1 23052648 23053031 -174142401 + Lx9 LINE L1 7246 7636 -8 1 760 194 163 0 39 chr1 23053095 23053146 -174142286 + CT-rich Low_complexity Low_complexity 3 51 0 1 760 434 301 34 7 chr1 23053156 23053303 -174142129 + MLT1A1 LTR MaLR 258 408 0 1 760 619 301 154 14 chr1 23053303 23053802 -174141630 + L1MA7 LINE L1 5646 6214 -77 1 760 303 28 0 0 chr1 23053808 23053844 -174141588 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 760 1037 286 19 133 chr1 23053868 23054189 -174141243 + MTE2a LTR MaLR 1 290 -89 1 760 1913 117 3 10 chr1 23054189 23054483 -174140949 + L1_Mus4 LINE L1 6338 6629 -7 1 760 1037 286 19 133 chr1 23054483 23054589 -174140843 + MTE2a LTR MaLR 291 379 0 1 760 661 295 69 25 chr1 23054769 23055043 -174140389 + ORR1E LTR MaLR 62 374 -5 1 760 330 243 159 25 chr1 23055139 23055384 -174140048 + L1M5 LINE L1 4101 4378 -1768 1 760 26 0 0 0 chr1 23055545 23055571 -174139861 + AT_rich Low_complexity Low_complexity 1 26 0 1 760 1879 167 19 39 chr1 23056295 23056747 -174138685 - RMER17C LTR ERVK -506 452 16 1 760 608 275 0 0 chr1 23057771 23057891 -174137541 - B3 SINE B2 0 216 97 1 760 951 78 0 0 chr1 23058087 23058216 -174137216 + (TTCCC)n Simple_repeat Simple_repeat 2 130 0 1 760 185 237 81 48 chr1 23058469 23058531 -174136901 - MER5B DNA MER1_type -109 69 6 1 760 811 254 10 78 chr1 23059208 23059413 -174136019 + B3A SINE B2 3 193 -5 1 760 244 253 440 0 chr1 23059725 23059816 -174135616 - RSINE1 SINE B4 -32 133 3 1 760 2179 67 3 54 chr1 23060573 23060889 -174134543 - L1_Mus1 LINE L1 -5 6562 6263 1 760 725 306 19 5 chr1 23061185 23061395 -174134037 - B3 SINE B2 0 216 4 1 760 437 200 0 17 chr1 23061437 23061554 -174133878 - Lx9 LINE L1 -17 7627 7513 1 760 679 313 0 6 chr1 23061565 23061729 -174133703 - B3 SINE B2 -2 214 52 1 760 5066 34 2 0 chr1 23061890 23062484 -174132948 + L1Md_T LINE L1 5987 6581 -1 1 760 1076 205 36 57 chr1 23062862 23063141 -174132291 - Lx9 LINE L1 -222 7422 7150 1 760 199 386 88 39 chr1 23063275 23063480 -174131952 + MIRb SINE MIR 1 215 -53 1 760 643 264 135 29 chr1 23063593 23063800 -174131632 + B4A SINE B4 1 229 -63 1 760 585 296 0 7 chr1 23063802 23063945 -174131487 + B1_Mur1 SINE Alu 1 142 -7 1 760 776 253 55 118 chr1 23065226 23065589 -174129843 - MTE2a LTR MaLR 0 379 40 1 760 580 222 16 124 chr1 23066328 23066360 -174129072 - Lx2A1 LINE L1 -4 6632 6604 1 760 1149 68 0 7 chr1 23066360 23066507 -174128925 - B1_Mm SINE Alu 0 147 2 1 760 1146 128 32 4 chr1 23066507 23066731 -174128701 - Lx2A1 LINE L1 -32 6976 6754 1 760 25 51 0 0 chr1 23068401 23068440 -174126992 + AT_rich Low_complexity Low_complexity 1 39 0 1 11 465 196 92 18 chr1 23068584 23068693 -174126739 + B1_Mur3 SINE Alu 27 143 -6 1 761 182 330 46 46 chr1 23069164 23069272 -174126160 + L2c LINE L2 3051 3158 -229 1 761 239 357 0 0 chr1 23070646 23070716 -174124716 + MER5B DNA MER1_type 46 115 -63 1 761 25 83 0 0 chr1 23071367 23071427 -174124005 + AT_rich Low_complexity Low_complexity 1 60 0 1 761 26 30 0 0 chr1 23071460 23071493 -174123939 + AT_rich Low_complexity Low_complexity 1 33 0 1 761 21 0 0 0 chr1 23071519 23071540 -174123892 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 403 219 202 0 chr1 23072077 23072196 -174123236 + RSINE1 SINE B4 5 147 -18 1 761 243 0 0 0 chr1 23072201 23072228 -174123204 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 761 307 299 27 68 chr1 23072249 23072396 -174123036 + L1ME3A LINE L1 5995 6135 -38 1 761 190 266 78 0 chr1 23072924 23072988 -174122444 - L2 LINE L2 -808 2611 2543 1 761 641 205 16 8 chr1 23072995 23073118 -174122314 - B1_Mur1 SINE Alu -1 148 25 1 761 198 366 31 42 chr1 23073184 23073375 -174122057 - L2 LINE L2 -1261 2158 1970 1 761 252 0 0 0 chr1 23074457 23074485 -174120947 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 761 406 298 69 0 chr1 23075300 23075431 -174120001 - B1_Mur1 SINE Alu -8 141 2 1 761 346 296 76 27 chr1 23076784 23077114 -174118318 + L1_Rod LINE L1 4861 5206 -641 1 761 452 371 71 35 chr1 23077143 23077397 -174118035 + B4A SINE B4 1 263 -29 1 761 201 283 19 39 chr1 23077412 23077447 -174117985 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 761 216 0 0 0 chr1 23077447 23077471 -174117961 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 761 333 0 0 0 chr1 23077471 23077507 -174117925 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 761 201 283 19 39 chr1 23077507 23077573 -174117859 + (CATA)n Simple_repeat Simple_repeat 1 65 0 1 761 308 230 186 7 chr1 23077673 23077830 -174117602 + L1M2 LINE L1 5427 5608 -692 1 761 425 304 0 0 chr1 23077832 23077934 -174117498 + B3 SINE B2 1 102 -114 1 761 366 333 79 6 chr1 23078107 23078285 -174117147 + MLT1D LTR MaLR 1 191 -314 1 761 282 213 0 0 chr1 23078855 23078949 -174116483 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 761 259 346 27 36 chr1 23079908 23079925 -174115507 - B1F SINE Alu 0 149 135 1 761 414 0 0 0 chr1 23079925 23079971 -174115461 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 761 419 253 0 0 chr1 23079972 23080051 -174115381 - ID_B1 SINE B4 -16 208 130 1 761 259 346 27 36 chr1 23080051 23080064 -174115368 - B1F SINE Alu -15 133 40 1 761 450 0 0 0 chr1 23080252 23080302 -174115130 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 761 227 278 0 0 chr1 23080834 23080906 -174114526 - L1M2 LINE L1 -500 5800 5729 1 761 276 30 0 0 chr1 23081849 23081882 -174113550 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 1 761 698 219 15 0 chr1 23083076 23083213 -174112219 + Lx5 LINE L1 6735 6873 -177 1 761 265 206 0 97 chr1 23083191 23083304 -174112128 + Lx4B LINE L1 6953 7054 -4 1 761 244 240 181 29 chr1 23083329 23083539 -174111893 + L1MEc LINE L1 748 989 -5411 1 761 691 195 13 13 chr1 23084436 23084587 -174110845 - L1_Mur2 LINE L1 -207 5670 5520 1 761 3651 189 35 35 chr1 23084585 23085450 -174109982 - L1_Mur2 LINE L1 -596 5281 4417 1 761 12749 98 24 6 chr1 23085451 23087363 -174108069 + L1VL2 LINE L1 117 2047 -1568 1 761 234 0 0 0 chr1 23087363 23087389 -174108043 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 761 12749 85 38 4 chr1 23087389 23087846 -174107586 + L1VL2 LINE L1 2048 2513 -1102 1 761 396 0 0 0 chr1 23087846 23087890 -174107542 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 761 12749 85 38 4 chr1 23087890 23088328 -174107104 + L1VL2 LINE L1 2514 2985 -630 1 761 746 202 6 0 chr1 23088398 23088571 -174106861 + GA-rich Low_complexity Low_complexity 2 175 0 1 761 4177 168 21 36 chr1 23088573 23089538 -174105894 - L1_Mur2 LINE L1 -1448 4429 3480 1 761 6320 165 65 28 chr1 23089536 23091181 -174104251 - L1_Mur2 LINE L1 -3271 2606 904 1 761 513 0 0 0 chr1 23092066 23092123 -174103309 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 761 649 277 24 19 chr1 23092184 23092390 -174103042 - B3 SINE B2 -9 207 1 1 761 704 301 25 40 chr1 23092443 23092644 -174102788 + B3A SINE B2 1 198 0 1 761 1128 81 0 39 chr1 23092746 23092900 -174102532 - B1_Mus1 SINE Alu 0 148 1 1 761 440 361 47 34 chr1 23093161 23093396 -174102036 - MIR SINE MIR -11 251 14 1 761 602 273 52 38 chr1 23093534 23093571 -174101861 - B3 SINE B2 0 216 180 1 761 387 0 0 0 chr1 23093571 23093614 -174101818 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 761 602 273 52 38 chr1 23093614 23093789 -174101643 - B3 SINE B2 -37 179 1 1 761 232 257 14 0 chr1 23094566 23094640 -174100792 + L1MEg LINE L1 1437 1511 -4573 1 761 873 232 43 0 chr1 23094677 23094884 -174100548 + B3 SINE B2 1 216 0 1 761 609 332 60 66 chr1 23094933 23095385 -174100047 - L1MEc LINE L1 -5913 487 39 1 761 930 133 6 11 chr1 23095397 23095572 -174099860 + (TTC)n Simple_repeat Simple_repeat 2 175 0 1 761 368 121 17 0 chr1 23095588 23095646 -174099786 - B1_Mus1 SINE Alu -88 60 2 1 761 22 35 0 0 chr1 23095820 23095849 -174099583 + AT_rich Low_complexity Low_complexity 1 29 0 1 761 26 50 0 0 chr1 23095876 23095916 -174099516 + AT_rich Low_complexity Low_complexity 1 40 0 1 761 6127 206 28 34 chr1 23096422 23098191 -174097241 + Lx7 LINE L1 1118 2883 -2997 1 761 261 180 0 0 chr1 23098211 23098261 -174097171 + GA-rich Low_complexity Low_complexity 3 52 0 1 761 3278 236 123 102 chr1 23098332 23099511 -174095921 + Lx7 LINE L1 5336 6594 -1102 1 761 228 283 135 45 chr1 23099511 23099622 -174095810 - MER20B DNA MER1_type -230 553 433 1 761 3278 236 123 102 chr1 23099622 23100335 -174095097 + Lx7 LINE L1 6595 7357 -339 1 761 295 341 58 48 chr1 23100621 23100932 -174094500 + L1M4 LINE L1 5353 5666 -508 1 761 310 288 53 20 chr1 23101962 23102109 -174093323 - MTEa LTR MaLR 0 370 228 1 761 343 261 75 21 chr1 23102139 23102233 -174093199 - MTEa LTR MaLR -254 125 27 1 761 188 35 35 0 chr1 23102420 23102449 -174092983 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 761 21 36 0 0 chr1 23102696 23102724 -174092708 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 327 214 132 28 chr1 23103314 23103420 -174092012 + MTE2a LTR MaLR 1 117 -262 1 761 674 307 101 58 chr1 23103441 23103769 -174091663 + MT2A LTR ERVL 180 521 -12 1 761 917 153 484 0 chr1 23103772 23104014 -174091418 + ORR1B2 LTR MaLR 1 359 -8 1 761 546 211 274 12 chr1 23104245 23104413 -174091019 + B3 SINE B2 5 216 0 1 761 348 24 0 0 chr1 23104649 23104690 -174090742 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 761 583 298 6 96 chr1 23105110 23105288 -174090144 - RSINE1 SINE B4 -1 164 3 1 761 672 132 0 0 chr1 23105954 23106083 -174089349 + (GA)n Simple_repeat Simple_repeat 1 129 0 1 761 1648 127 24 94 chr1 23106395 23106726 -174088706 - ORR1A4 LTR MaLR -21 308 1 1 761 333 313 67 7 chr1 23107508 23107643 -174087789 - MIRc SINE MIR -112 156 14 1 761 22 56 0 0 chr1 23108404 23108440 -174086992 + AT_rich Low_complexity Low_complexity 1 36 0 1 761 1365 191 42 15 chr1 23110270 23110531 -174084901 + RMER5 LTR ERV1 35 302 -232 1 761 278 256 145 19 chr1 23110549 23110708 -174084724 + L1MA8 LINE L1 6068 6246 -45 1 761 1905 74 26 7 chr1 23110708 23110980 -174084452 + L1Md_F2 LINE L1 6302 6578 -4 2 761 304 23 0 0 chr1 23111016 23111060 -174084372 + L1Md_F3 LINE L1 6527 6570 -14 2 761 867 70 0 0 chr1 23111271 23111386 -174084046 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 761 1188 51 0 0 chr1 23112940 23113077 -174082355 + B1_Mus2 SINE Alu 1 137 -10 2 761 3720 184 34 12 chr1 23113228 23113898 -174081534 - L1_Mur3 LINE L1 -3834 2043 1356 2 761 3538 25 33 0 chr1 23113898 23114296 -174081136 + IAPLTR2a LTR ERVK 1 411 0 2 761 3720 189 66 19 chr1 23114296 23114578 -174080854 - L1_Mur3 LINE L1 -4522 1355 1055 2 761 4369 146 10 3 chr1 23114594 23115218 -174080214 - Lx4A LINE L1 0 7058 6431 2 761 2654 184 72 18 chr1 23115218 23115539 -174079893 + Lx4A LINE L1 5834 6167 -891 2 761 4318 148 40 5 chr1 23115539 23116206 -174079226 - RLTR17 LTR ERVK 0 692 2 2 761 2654 184 72 18 chr1 23116206 23116443 -174078989 + Lx4A LINE L1 6168 6422 -636 2 761 950 252 4 0 chr1 23116441 23116675 -174078757 - L1_Mur3 LINE L1 -6597 1131 897 2 761 424 331 59 13 chr1 23117792 23117918 -174077514 - MTE2b LTR MaLR -55 324 196 2 761 270 299 88 77 chr1 23117918 23118099 -174077333 + B3A SINE B2 5 187 -11 2 761 424 331 59 13 chr1 23118099 23118125 -174077307 - MTE2b LTR MaLR -184 195 165 2 761 706 245 32 97 chr1 23118133 23118362 -174077070 - MTE2b LTR MaLR -200 219 21 2 761 267 386 0 52 chr1 23118450 23118603 -174076829 + L2c LINE L2 3179 3323 -64 2 761 2098 175 53 48 chr1 23119461 23119876 -174075556 + MTD LTR MaLR 3 419 0 2 761 300 154 0 0 chr1 23120252 23120304 -174075128 + A-rich Low_complexity Low_complexity 3 54 0 2 761 435 387 73 25 chr1 23120393 23120597 -174074835 - MLT1J LTR MaLR -179 333 120 2 761 604 254 115 33 chr1 23121773 23121956 -174073476 - B3A SINE B2 0 198 1 2 761 308 246 26 0 chr1 23123067 23123155 -174072277 + MTE2a LTR MaLR 290 379 0 2 761 859 137 1 1 chr1 23123673 23123812 -174071620 - Lx2 LINE L1 -528 6445 6305 2 761 1097 150 6 6 chr1 23123812 23123993 -174071439 - B2_Mm2 SINE B2 -14 181 1 2 761 584 135 0 0 chr1 23123994 23124083 -174071349 - 4.5SRNA scRNA scRNA -5 89 1 2 761 285 29 0 0 chr1 23124087 23124121 -174071311 + (TATG)n Simple_repeat Simple_repeat 2 35 0 2 761 896 151 30 30 chr1 23124121 23124285 -174071147 - B2_Mm2 SINE B2 -31 164 1 2 761 233 237 38 38 chr1 23124289 23124368 -174071064 - Lx8 LINE L1 -1 7472 7394 2 761 211 308 0 0 chr1 23124603 23124668 -174070764 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 761 397 225 0 24 chr1 23124735 23124817 -174070615 + B1_Mur1 SINE Alu 70 149 0 2 761 235 310 106 0 chr1 23124848 23124961 -174070471 + MER94 DNA AcHobo 8 132 -2 2 761 390 281 149 99 chr1 23125957 23126178 -174069254 - MER2 DNA MER2_type -101 244 4 2 761 377 39 20 0 chr1 23126193 23126244 -174069188 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 2 761 802 150 7 7 chr1 23126969 23127117 -174068315 + Lx2B LINE L1 6850 6997 -3 2 761 465 278 16 143 chr1 23128534 23128723 -174066709 + RSINE1 SINE B4 1 165 0 2 761 373 33 0 62 chr1 23128740 23128805 -174066627 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 2 761 25 31 0 0 chr1 23128813 23128845 -174066587 + AT_rich Low_complexity Low_complexity 1 32 0 2 761 304 325 41 73 chr1 23129184 23129307 -174066125 + RSINE1 SINE B4 47 165 0 2 761 252 0 0 0 chr1 23129319 23129347 -174066085 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 761 4461 105 51 18 chr1 23129347 23130067 -174065365 - RMER17A LTR ERVK -7 744 1 2 761 573 15 0 0 chr1 23130183 23130249 -174065183 + (CTTG)n Simple_repeat Simple_repeat 2 67 0 2 761 465 271 12 48 chr1 23130394 23130561 -174064871 + MLT1A LTR MaLR 31 191 -183 2 761 633 208 14 18 chr1 23130571 23130860 -174064572 + CT-rich Low_complexity Low_complexity 1 287 0 2 761 252 357 36 0 chr1 23130860 23130972 -174064460 + MLT1A LTR MaLR 214 329 -61 2 761 271 377 0 8 chr1 23130990 23131121 -174064311 + Lx6 LINE L1 7304 7433 -27 2 761 605 295 126 57 chr1 23132858 23132979 -174062453 - MLT1H-int LTR MaLR -8 1401 1278 2 761 3343 95 212 0 chr1 23132979 23133461 -174061971 - MT2B2 LTR ERVL 0 584 1 2 761 605 295 126 57 chr1 23133461 23133727 -174061705 - MLT1H-int LTR MaLR -132 1277 988 2 761 1459 152 56 69 chr1 23134154 23134457 -174060975 + ORR1A4 LTR MaLR 3 301 -28 2 761 284 324 50 94 chr1 23134886 23135087 -174060345 + ORR1E LTR MaLR 4 195 -164 2 761 507 163 0 24 chr1 23136547 23136673 -174058759 + (TG)n Simple_repeat Simple_repeat 1 123 0 2 761 354 174 0 27 chr1 23136718 23136830 -174058602 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 761 248 228 43 21 chr1 23136834 23136928 -174058504 + (TATATG)n Simple_repeat Simple_repeat 4 99 0 2 761 352 87 0 42 chr1 23137041 23137113 -174058319 + (CAAAA)n Simple_repeat Simple_repeat 1 69 0 2 761 814 95 0 0 chr1 23137412 23137528 -174057904 - URR1B DNA MER1_type 0 225 110 2 761 1191 310 99 45 chr1 23137885 23138343 -174057089 + Lx8 LINE L1 6867 7336 -137 2 761 216 97 0 0 chr1 23138343 23138374 -174057058 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 761 1191 310 99 45 chr1 23138374 23138489 -174056943 + Lx8 LINE L1 7337 7470 -3 2 761 1087 278 78 47 chr1 23138537 23138896 -174056536 - ORR1D2 LTR MaLR 0 370 1 2 761 185 310 113 0 chr1 23140055 23140126 -174055306 - MIRb SINE MIR -8 260 182 2 761 1467 271 90 77 chr1 23140212 23140759 -174054673 - RMER15 LTR ERVL -14 561 8 2 761 210 167 0 0 chr1 23142217 23142253 -174053179 + T-rich Low_complexity Low_complexity 1 36 0 2 761 8971 108 6 21 chr1 23142279 23143612 -174051820 - Lx3A LINE L1 -5 6976 5664 2 761 1639 48 5 10 chr1 23143606 23143815 -174051617 + L1_Mur1 LINE L1 5067 5274 -612 2 761 212 214 0 35 chr1 23143884 23143921 -174051511 + polypyrimidine Low_complexity Low_complexity 22 58 0 2 761 1188 82 0 7 chr1 23143921 23144068 -174051364 - B1_Mus2 SINE Alu 0 147 2 2 761 212 214 0 35 chr1 23144068 23144088 -174051344 + polypyrimidine Low_complexity Low_complexity 3 21 0 2 761 1127 101 0 7 chr1 23144224 23144373 -174051059 + B1_Mus1 SINE Alu 1 148 0 2 761 451 0 0 33 chr1 23144566 23144627 -174050805 + (CATAA)n Simple_repeat Simple_repeat 4 62 0 2 761 189 121 0 0 chr1 23144750 23144783 -174050649 + (TATG)n Simple_repeat Simple_repeat 4 36 0 2 761 1267 162 60 20 chr1 23145215 23145467 -174049965 - Lx2A1 LINE L1 0 7008 6747 2 761 519 145 0 0 chr1 23145467 23145550 -174049882 + MusHAL1 LINE L1 232 314 -2398 2 761 210 245 0 20 chr1 23146112 23146162 -174049270 + CT-rich Low_complexity Low_complexity 1 49 0 2 761 227 224 75 0 chr1 23146693 23146760 -174048672 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 2 761 950 132 0 6 chr1 23147621 23147781 -174047651 + (GAA)n Simple_repeat Simple_repeat 1 159 0 2 761 28 29 0 0 chr1 23148245 23148280 -174047152 + AT_rich Low_complexity Low_complexity 1 35 0 2 761 3950 122 108 11 chr1 23148289 23148935 -174046497 - Lx3B LINE L1 -4 6969 6261 2 761 630 124 0 0 chr1 23148935 23149024 -174046408 + Lx3B LINE L1 6167 6255 -718 2 761 243 79 0 0 chr1 23149059 23149097 -174046335 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 761 47 0 0 0 chr1 23149343 23149390 -174046042 + AT_rich Low_complexity Low_complexity 1 47 0 2 761 298 20 82 0 chr1 23149667 23149716 -174045716 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 2 761 3628 35 2 0 chr1 23149759 23150154 -174045278 + MTA_Mm LTR MaLR 1 396 0 2 761 1642 115 20 32 chr1 23150154 23150406 -174045026 - Lx2 LINE L1 -6 6991 6743 2 761 276 374 121 11 chr1 23150412 23150685 -174044747 + LTR41 LTR ERVL 74 376 -392 2 761 415 319 206 64 chr1 23150682 23150802 -174044630 + LTR41 LTR ERVL 256 376 -392 2 761 2904 176 61 38 chr1 23150802 23151183 -174044249 - RMER15 LTR ERVL -1 574 194 2 761 513 0 0 0 chr1 23151183 23151240 -174044192 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 2 761 1245 36 0 0 chr1 23151240 23151377 -174044055 - B1_Mm SINE Alu -10 137 1 2 761 2904 176 61 38 chr1 23151377 23151553 -174043879 - RMER15 LTR ERVL -382 193 4 2 761 415 319 206 64 chr1 23151553 23151868 -174043564 + LTR41 LTR ERVL 377 753 -15 2 761 23 0 0 0 chr1 23152099 23152122 -174043310 + AT_rich Low_complexity Low_complexity 1 23 0 2 761 236 286 114 45 chr1 23152468 23152600 -174042832 + MLT1K LTR MaLR 260 400 -195 2 761 414 0 0 0 chr1 23152619 23152665 -174042767 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 761 1610 270 83 23 chr1 23153869 23154397 -174041035 - Lx6 LINE L1 -27 7433 6489 2 761 972 120 0 0 chr1 23154397 23154547 -174040885 + (GGA)n Simple_repeat Simple_repeat 2 151 0 2 761 1101 203 48 124 chr1 23154552 23154946 -174040486 + Lx9 LINE L1 7281 7644 0 2 761 483 291 48 19 chr1 23154957 23155167 -174040265 + L1M2 LINE L1 3681 3896 -2247 2 761 834 240 250 51 chr1 23155167 23155479 -174039953 - ORR1D1 LTR MaLR 0 374 1 2 761 1213 98 0 17 chr1 23155574 23155587 -174039845 - B2_Mm2 SINE B2 -21 174 164 2 761 216 0 0 0 chr1 23155587 23155611 -174039821 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2 761 1213 98 0 17 chr1 23155611 23155773 -174039659 - B2_Mm2 SINE B2 -32 163 2 2 761 765 295 120 52 chr1 23155962 23156560 -174038872 - L1_Rod LINE L1 -3873 1974 1336 2 761 553 183 223 0 chr1 23156667 23156842 -174038590 - Lx9 LINE L1 -1 7643 7430 2 761 1049 121 12 0 chr1 23157481 23157654 -174037778 + (GGAAA)n Simple_repeat Simple_repeat 1 175 0 2 761 1181 51 17 11 chr1 23158325 23158504 -174036928 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 761 519 341 73 27 chr1 23158506 23158726 -174036706 - B4A SINE B4 -62 230 1 2 761 289 291 244 6 chr1 23159136 23159156 -174036276 - L2 LINE L2 -2701 718 699 2 761 2753 136 35 24 chr1 23159156 23159617 -174035815 + RMER4A LTR ERVK 1 466 0 2 761 289 291 244 6 chr1 23159617 23159956 -174035476 - L2 LINE L2 -2721 698 274 2 761 4574 51 24 0 chr1 23161625 23162399 -174033033 - L1_Mus2 LINE L1 -400 6166 5379 2 761 273 258 32 0 chr1 23163299 23163361 -174032071 + B3 SINE B2 132 195 -21 2 761 465 301 10 0 chr1 23163377 23163480 -174031952 + PB1D9 SINE Alu 5 108 -12 2 761 468 0 0 0 chr1 23163480 23163532 -174031900 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 761 207 0 0 0 chr1 23163990 23164013 -174031419 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 761 202 268 0 0 chr1 23164496 23164537 -174030895 + polypurine Low_complexity Low_complexity 1 41 0 3 761 249 33 0 0 chr1 23165207 23165237 -174030195 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 761 348 270 103 82 chr1 23165258 23165452 -174029980 - RLTR12B LTR ERVK -235 293 96 3 761 2015 102 0 3 chr1 23165452 23165738 -174029694 + Lx4B LINE L1 5727 6011 -1047 3 761 506 122 14 0 chr1 23165736 23165810 -174029622 - L1_Mur2 LINE L1 -779 5098 5024 3 761 3526 162 37 31 chr1 23165811 23166455 -174028977 + Lx3C LINE L1 6327 6974 -2 3 761 6530 132 32 30 chr1 23166469 23167520 -174027912 + Lx4B LINE L1 5999 7051 -7 3 761 578 309 47 9 chr1 23168613 23168825 -174026607 + L1MEf LINE L1 553 772 -5428 3 761 252 174 0 0 chr1 23168844 23168890 -174026542 + L1MEf LINE L1 944 989 -5105 3 761 684 354 110 43 chr1 23168941 23169505 -174025927 + L1MEf LINE L1 1013 1614 -4586 3 761 1823 151 13 0 chr1 23170970 23171274 -174024158 + ORR1A4 LTR MaLR 20 327 -2 3 761 209 83 28 0 chr1 23171488 23171524 -174023908 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 3 761 13816 89 24 12 chr1 23171591 23172743 -174022689 - L1VL2 LINE L1 -627 2988 1811 3 761 1245 68 0 0 chr1 23172743 23172890 -174022542 + B1_Mus1 SINE Alu 1 147 -1 3 761 896 0 10 0 chr1 23172890 23172994 -174022438 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 761 13816 91 29 75 chr1 23172994 23174026 -174021406 - L1VL2 LINE L1 -1805 1810 764 3 761 973 88 7 7 chr1 23174026 23174164 -174021268 + B1_Mus1 SINE Alu 11 148 0 3 761 13816 91 29 75 chr1 23174164 23174850 -174020582 - L1VL2 LINE L1 -1805 763 66 3 761 213 213 0 0 chr1 23174874 23174921 -174020511 + T-rich Low_complexity Low_complexity 1 47 0 3 761 237 175 0 0 chr1 23174930 23174970 -174020462 - PB1D10 SINE Alu -32 85 46 3 761 778 232 86 32 chr1 23175484 23175671 -174019761 - B3A SINE B2 0 198 2 3 761 2275 215 9 7 chr1 23176373 23176809 -174018623 - Lx5 LINE L1 -8 7042 6606 3 761 524 286 0 0 chr1 23176860 23176979 -174018453 - RSINE1 SINE B4 -43 122 4 3 761 1142 91 123 29 chr1 23177020 23177158 -174018274 + B2_Mm2 SINE B2 2 151 -44 3 761 477 0 0 0 chr1 23177158 23177211 -174018221 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 761 1142 91 123 29 chr1 23177211 23177242 -174018190 + B2_Mm2 SINE B2 152 187 -8 3 761 493 264 9 0 chr1 23177428 23177538 -174017894 - RSINE1 SINE B4 -53 112 2 3 761 249 362 96 0 chr1 23177989 23178083 -174017349 + PB1D10 SINE Alu 1 103 -14 3 761 21 57 0 0 chr1 23178742 23178777 -174016655 + AT_rich Low_complexity Low_complexity 1 35 0 3 761 997 147 34 6 chr1 23178825 23179003 -174016429 - URR1A DNA MER1_type 0 226 44 3 761 796 314 111 32 chr1 23179024 23179393 -174016039 - MLT1F LTR MaLR -46 502 105 3 761 23 54 0 0 chr1 23180266 23180303 -174015129 + AT_rich Low_complexity Low_complexity 1 37 0 3 761 725 154 26 0 chr1 23182776 23183013 -174012419 + (TG)n Simple_repeat Simple_repeat 1 243 0 3 761 683 146 38 9 chr1 23183025 23183370 -174012062 + (TG)n Simple_repeat Simple_repeat 1 355 0 3 761 206 273 18 0 chr1 23183370 23183425 -174012007 + (TATG)n Simple_repeat Simple_repeat 3 58 0 3 761 217 132 0 0 chr1 23183634 23183672 -174011760 + (A)n Simple_repeat Simple_repeat 1 38 0 3 761 236 270 0 0 chr1 23184701 23184787 -174010645 + (TATG)n Simple_repeat Simple_repeat 1 86 0 3 761 219 88 0 0 chr1 23184787 23184821 -174010611 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 761 186 133 0 0 chr1 23185991 23186021 -174009411 + (TTG)n Simple_repeat Simple_repeat 3 32 0 3 761 712 246 0 0 chr1 23186025 23186159 -174009273 - B1_Mur1 SINE Alu -15 134 1 3 761 225 65 0 0 chr1 23186296 23186327 -174009105 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 761 8972 111 14 38 chr1 23186384 23188247 -174007185 - L1_Mus4 LINE L1 -6 6630 4865 3 761 5072 61 19 22 chr1 23188247 23188885 -174006547 + L1Md_F2 LINE L1 5946 6581 -1 3 761 8972 149 21 83 chr1 23188885 23189117 -174006315 - L1_Mus4 LINE L1 -1019 4864 4637 3 761 273 57 0 0 chr1 23189117 23189152 -174006280 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 761 8972 149 21 83 chr1 23189152 23189551 -174005881 - L1_Mus4 LINE L1 -1247 4636 4238 3 761 271 291 112 60 chr1 23189789 23190038 -174005394 - Lx8 LINE L1 -1 7472 7211 3 761 706 307 0 61 chr1 23190117 23190346 -174005086 - Lx8 LINE L1 -292 7181 6967 3 761 1030 271 64 52 chr1 23190363 23190771 -174004661 - Lx8 LINE L1 -1007 6466 6054 3 761 259 357 103 14 chr1 23190868 23191013 -174004419 - MARNA DNA Mariner -180 406 249 3 761 188 182 23 0 chr1 23192109 23192153 -174003279 + CT-rich Low_complexity Low_complexity 2 46 0 3 761 430 320 29 44 chr1 23192225 23192431 -174003001 - B4A SINE B4 -7 285 83 3 761 315 224 35 0 chr1 23192683 23192741 -174002691 - ID4_ SINE ID -2 81 22 3 761 7446 108 18 7 chr1 23192970 23194242 -174001190 + Lx LINE L1 5362 6651 -3 3 761 3314 55 5 17 chr1 23195293 23195698 -173999734 + MTB LTR MaLR 1 400 0 3 761 25 0 0 0 chr1 23195839 23195864 -173999568 + AT_rich Low_complexity Low_complexity 1 25 0 3 761 421 203 16 85 chr1 23195875 23196004 -173999428 - PB1D9 SINE Alu 0 120 1 3 761 228 241 70 72 chr1 23196085 23196216 -173999216 + MIRb SINE MIR 16 132 -130 3 761 288 309 45 9 chr1 23197236 23197347 -173998085 - MER105 DNA DNA -59 145 31 3 761 423 0 0 0 chr1 23197508 23197555 -173997877 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 761 23 0 0 0 chr1 23197885 23197908 -173997524 + AT_rich Low_complexity Low_complexity 1 23 0 3 761 828 245 38 50 chr1 23198915 23199143 -173996289 - MLT1A0 LTR MaLR -2 465 138 3 761 2080 160 12 9 chr1 23199143 23199471 -173995961 + ORR1A4 LTR MaLR 1 329 0 3 761 828 314 28 51 chr1 23199471 23199611 -173995821 - MLT1A0 LTR MaLR -228 137 2 3 762 260 341 118 31 chr1 23200624 23200751 -173994681 + MLT1B LTR MaLR 3 140 -271 3 762 279 206 147 0 chr1 23200755 23200823 -173994609 - PB1D10 SINE Alu -7 110 33 3 762 250 349 30 37 chr1 23201052 23201186 -173994246 + MLT1B-int LTR MaLR 108 240 -1169 3 762 1121 165 11 0 chr1 23201336 23201512 -173993920 + B2_Mm1t SINE B2 2 179 -14 3 762 296 132 390 20 chr1 23201575 23201675 -173993757 + B2_Mm2 SINE B2 49 185 -10 3 762 840 85 0 0 chr1 23201675 23201793 -173993639 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 3 762 359 328 8 0 chr1 23201856 23201975 -173993457 + MLT1B LTR MaLR 2 121 -269 3 762 331 298 167 56 chr1 23201970 23202260 -173993172 + MLT2B1 LTR ERVL 114 422 -98 3 762 551 113 43 0 chr1 23202275 23202390 -173993042 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 3 762 430 93 72 30 chr1 23202435 23202602 -173992830 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 3 762 511 326 53 32 chr1 23202618 23202903 -173992529 + MLT1B LTR MaLR 97 387 -3 3 762 573 15 0 0 chr1 23203003 23203069 -173992363 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 762 306 331 100 43 chr1 23203148 23203429 -173992003 - LTR33 LTR ERVL -15 500 204 3 762 267 103 0 0 chr1 23203451 23203490 -173991942 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 762 1117 247 159 3 chr1 23203580 23203932 -173991500 + MTD LTR MaLR 1 393 -26 3 762 244 328 113 40 chr1 23204530 23204654 -173990778 + MLT1H LTR MaLR 102 234 -315 3 762 1005 254 16 24 chr1 23205001 23205251 -173990181 + MTE-int LTR MaLR 1326 1573 -7 3 762 680 275 129 46 chr1 23205274 23205537 -173989895 + MTEa LTR MaLR 92 376 -3 3 762 231 381 0 0 chr1 23205697 23205781 -173989651 - L2 LINE L2 -625 2794 2711 3 762 1266 103 45 70 chr1 23206092 23206252 -173989180 + B2_Mm2 SINE B2 2 161 -34 3 762 221 0 0 33 chr1 23206252 23206282 -173989150 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 762 1266 103 45 70 chr1 23206282 23206320 -173989112 + B2_Mm2 SINE B2 162 195 0 3 762 557 289 85 65 chr1 23206389 23206550 -173988882 + B4A SINE B4 76 249 -43 3 762 1480 61 5 22 chr1 23206550 23206734 -173988698 + B2_Mm1t SINE B2 2 182 -11 3 762 387 0 0 0 chr1 23206734 23206777 -173988655 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 762 557 289 85 65 chr1 23206777 23206814 -173988618 + B4A SINE B4 250 278 -14 3 762 225 0 0 0 chr1 23207271 23207296 -173988136 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 762 287 299 71 50 chr1 23207666 23207807 -173987625 + MIRb SINE MIR 104 247 -21 3 762 299 288 0 27 chr1 23208490 23208565 -173986867 - B4A SINE B4 0 292 220 3 762 353 375 24 36 chr1 23208592 23208758 -173986674 - RSINE1 SINE B4 0 165 2 3 762 728 266 130 19 chr1 23208758 23208962 -173986470 - B4A SINE B4 -62 230 4 3 762 534 103 0 0 chr1 23208996 23209083 -173986349 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 762 182 91 0 29 chr1 23209110 23209144 -173986288 + (TAAAAA)n Simple_repeat Simple_repeat 1 33 0 3 762 265 267 93 0 chr1 23210616 23210691 -173984741 - B3A SINE B2 -34 164 83 3 762 5198 77 8 1 chr1 23211776 23212429 -173983003 - L1_Mus3 LINE L1 -2 6636 5980 3 762 5769 83 0 1 chr1 23212429 23213187 -173982245 + L1_Mm LINE L1 4973 5729 -154 3 762 262 138 17 17 chr1 23213475 23213534 -173981898 + (CAA)n Simple_repeat Simple_repeat 3 61 0 3 762 216 0 0 0 chr1 23213831 23213855 -173981577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 762 315 290 110 0 chr1 23215046 23215201 -173980231 - LTR37A LTR ERV1 0 426 255 3 762 311 228 138 17 chr1 23215201 23215317 -173980115 + Lx9 LINE L1 7374 7503 -141 3 762 247 271 47 12 chr1 23215498 23215584 -173979848 - LTR37A LTR ERV1 -286 140 52 3 762 496 260 158 67 chr1 23215680 23215845 -173979587 + B3A SINE B2 3 182 -16 3 762 242 273 0 18 chr1 23215934 23215990 -173979442 - RSINE1 SINE B4 -109 56 2 3 762 252 0 0 0 chr1 23216072 23216100 -173979332 + (A)n Simple_repeat Simple_repeat 1 28 0 3 762 686 275 18 91 chr1 23216126 23216346 -173979086 + B4A SINE B4 3 206 -86 3 762 500 45 15 0 chr1 23216377 23216444 -173978988 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 762 335 321 17 60 chr1 23217152 23217268 -173978164 + PB1D10 SINE Alu 1 111 -6 3 762 197 180 0 20 chr1 23217317 23217368 -173978064 + GA-rich Low_complexity Low_complexity 1 50 0 3 762 198 0 0 0 chr1 23217398 23217420 -173978012 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 762 991 296 39 23 chr1 23217901 23217983 -173977449 + MTE2b LTR MaLR 67 151 -228 3 762 2467 103 22 3 chr1 23217983 23218304 -173977128 - ORR1A2 LTR MaLR 0 327 1 3 762 991 296 39 23 chr1 23218304 23218529 -173976903 + MTE2b LTR MaLR 152 379 0 3 762 974 263 63 26 chr1 23218679 23218948 -173976484 - B4 SINE B4 0 292 14 3 762 220 194 0 0 chr1 23219508 23219544 -173975888 - B1F2 SINE Alu -113 36 1 3 762 1994 141 20 72 chr1 23220194 23220539 -173974893 - ORR1A4 LTR MaLR -2 327 1 3 762 881 198 44 13 chr1 23220637 23220838 -173974594 + ORR1D1 LTR MaLR 1 218 -141 3 762 183 186 0 0 chr1 23221053 23221096 -173974336 + A-rich Low_complexity Low_complexity 1 43 0 3 762 567 0 0 0 chr1 23221271 23221334 -173974098 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 762 246 375 70 35 chr1 23223021 23223278 -173972154 - MER46C DNA MER2_type 0 338 73 4 762 345 386 82 8 chr1 23223711 23223954 -173971478 - MLT1I LTR MaLR -49 362 102 4 762 3225 60 2 0 chr1 23224034 23224433 -173970999 - MTB LTR MaLR 0 400 1 4 762 203 156 0 0 chr1 23224764 23224796 -173970636 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 762 1108 271 131 2 chr1 23225462 23226003 -173969429 - Lx8 LINE L1 -660 6813 6204 4 762 843 325 80 25 chr1 23226003 23226480 -173968952 + Lx8 LINE L1 6970 7472 -1 4 762 1229 304 37 5 chr1 23226584 23226988 -173968444 + Lx8 LINE L1 6366 6782 -691 4 762 1032 52 7 7 chr1 23227038 23227174 -173968258 + B1_Mm SINE Alu 12 147 0 4 762 1029 109 0 7 chr1 23227187 23227334 -173968098 + B1_Mus1 SINE Alu 2 147 -1 4 762 717 73 0 0 chr1 23227334 23227443 -173967989 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 4 762 266 322 0 0 chr1 23227451 23227541 -173967891 + Lx8 LINE L1 6840 6929 -544 4 762 1268 211 89 0 chr1 23227549 23227829 -173967603 + Lx5 LINE L1 6746 7050 0 4 762 562 322 58 10 chr1 23227893 23228185 -173967247 + Lx8 LINE L1 6987 7292 -181 4 762 756 111 0 0 chr1 23228215 23228332 -173967100 + (GGAA)n Simple_repeat Simple_repeat 1 117 0 4 762 783 251 18 0 chr1 23228815 23229042 -173966390 - L1MA4 LINE L1 -371 5929 5699 4 762 347 320 6 50 chr1 23229118 23229279 -173966153 + L1MEg LINE L1 1284 1437 -4647 4 762 786 327 137 10 chr1 23229759 23230154 -173965278 - MLT1G1 LTR MaLR -28 551 107 4 762 1052 172 0 16 chr1 23230212 23230401 -173965031 - B2_Mm2 SINE B2 -9 186 1 4 762 195 69 0 0 chr1 23231592 23231621 -173963811 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 762 1253 124 0 5 chr1 23231632 23231819 -173963613 + B2_Mm2 SINE B2 1 186 -9 4 762 536 292 30 88 chr1 23232238 23232436 -173962996 - B3A SINE B2 -3 213 27 4 762 1579 132 34 28 chr1 23232504 23232920 -173962512 + RLTR45 LTR ERVK 1 466 -16 4 762 1334 83 6 0 chr1 23232925 23233105 -173962327 + B2_Mm1t SINE B2 13 193 0 4 762 213 195 0 0 chr1 23233205 23233246 -173962186 - B3A SINE B2 -156 42 2 4 762 827 173 310 103 chr1 23233772 23233965 -173961467 - ORR1D1 LTR MaLR 0 374 167 4 762 1059 52 0 0 chr1 23233965 23234099 -173961333 + (GGGAGA)n Simple_repeat Simple_repeat 6 139 0 4 762 827 173 310 103 chr1 23234099 23234215 -173961217 - ORR1D1 LTR MaLR -208 166 1 4 762 465 204 39 0 chr1 23234783 23234886 -173960546 + ORR1D1 LTR MaLR 268 374 0 4 762 1086 86 0 0 chr1 23235041 23235192 -173960240 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 4 762 468 0 0 0 chr1 23235299 23235351 -173960081 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 762 270 341 11 11 chr1 23235390 23235482 -173959950 - MER58A DNA MER1_type -62 162 71 4 762 286 293 19 39 chr1 23235546 23235649 -173959783 - MER58A DNA MER1_type -123 101 1 4 762 22 0 0 0 chr1 23235722 23235744 -173959688 + AT_rich Low_complexity Low_complexity 1 22 0 4 762 288 164 0 0 chr1 23235822 23235877 -173959555 - Lx8 LINE L1 0 7473 7419 4 762 2510 141 78 30 chr1 23236853 23237388 -173958044 - RLTR31_Mm LTR ERVK 0 561 1 4 762 910 264 146 21 chr1 23237691 23238020 -173957412 - ORR1D2 LTR MaLR 0 370 1 4 762 309 338 80 20 chr1 23238862 23239013 -173956419 + MIRc SINE MIR 2 161 -107 4 762 584 284 0 43 chr1 23239312 23239522 -173955910 - RMER30 DNA MER1_type -1 201 1 4 762 343 311 116 26 chr1 23239974 23240129 -173955303 - L1ME3A LINE L1 -3 6170 6002 4 762 292 325 73 38 chr1 23240148 23240465 -173954967 - L1ME3A LINE L1 -242 5931 5604 4 762 324 282 0 0 chr1 23240803 23240874 -173954558 - ID_B1 SINE B4 -2 222 152 4 762 218 284 193 25 chr1 23240874 23240917 -173954515 - B1_Mus1 SINE Alu 0 143 10 4 762 2022 150 16 0 chr1 23241019 23241339 -173954093 + ORR1A2 LTR MaLR 1 325 -2 4 762 254 264 0 112 chr1 23242723 23242792 -173952640 + PB1D10 SINE Alu 25 90 -27 4 762 404 19 19 0 chr1 23242792 23242845 -173952587 + (TAA)n Simple_repeat Simple_repeat 2 55 0 4 762 254 264 0 112 chr1 23242845 23242873 -173952559 + PB1D10 SINE Alu 91 111 -6 4 762 3792 196 54 35 chr1 23242873 23243204 -173952228 + RLTR25B LTR ERVK 1 369 -659 4 762 3464 23 5 0 chr1 23243204 23243598 -173951834 - MTA_Mm LTR MaLR 0 396 1 4 762 3792 188 50 31 chr1 23243598 23244138 -173951294 + RLTR25B LTR ERVK 370 1015 -13 4 762 228 296 29 48 chr1 23245325 23245428 -173950004 + PB1D10 SINE Alu 1 101 -16 4 762 241 215 16 40 chr1 23246608 23246734 -173948698 + (TTAA)n Simple_repeat Simple_repeat 1 123 0 4 762 347 21 43 0 chr1 23247445 23247492 -173947940 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 762 1308 214 91 33 chr1 23247493 23247822 -173947610 - ORR1D2 LTR MaLR -22 348 1 4 762 1088 85 0 0 chr1 23248322 23248463 -173946969 + B1_Mus1 SINE Alu 2 142 -6 4 762 535 317 78 11 chr1 23249242 23249433 -173945999 + B4 SINE B4 13 216 -76 4 762 216 67 0 0 chr1 23249500 23249530 -173945902 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 762 264 323 41 10 chr1 23250106 23250203 -173945229 + B1F SINE Alu 1 100 -49 4 762 396 0 0 0 chr1 23250205 23250249 -173945183 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 762 432 0 0 0 chr1 23250249 23250296 -173945136 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 762 370 263 42 17 chr1 23250407 23250527 -173944905 + Lx9 LINE L1 7097 7219 -425 4 762 236 252 92 134 chr1 23250539 23250658 -173944774 - MLT1H LTR MaLR -396 153 40 4 762 405 0 0 0 chr1 23250750 23250795 -173944637 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 762 1137 134 21 31 chr1 23251027 23251178 -173944254 + B2_Mm2 SINE B2 2 152 -43 4 762 2085 62 15 0 chr1 23251178 23251450 -173943982 + L1Md_A LINE L1 6306 6581 -1 4 762 1137 134 21 31 chr1 23251450 23251491 -173943941 + B2_Mm2 SINE B2 153 192 -3 4 762 21 36 0 0 chr1 23251678 23251706 -173943726 + AT_rich Low_complexity Low_complexity 1 28 0 4 762 1575 230 111 30 chr1 23252471 23252947 -173942485 + RMER1B Other Other 49 536 -530 4 762 1746 164 87 85 chr1 23252950 23253403 -173942029 - RMER16 LTR ERVK 0 533 1 4 762 331 269 0 0 chr1 23253415 23253493 -173941939 + RMER1A Other Other 1 78 -952 4 762 1176 102 26 26 chr1 23253496 23253688 -173941744 + B2_Mm2 SINE B2 3 194 -1 4 762 402 239 20 98 chr1 23253806 23253908 -173941524 + RSINE1 SINE B4 2 95 -197 4 762 744 222 167 0 chr1 23253927 23254107 -173941325 - MTD LTR MaLR -192 227 18 4 762 1077 88 20 0 chr1 23254247 23254394 -173941038 + B1_Mur4 SINE Alu 1 150 0 4 762 507 269 71 36 chr1 23254483 23254707 -173940725 + Lx8 LINE L1 7233 7464 -9 4 762 1015 275 60 35 chr1 23254951 23255320 -173940112 + Lx8 LINE L1 6517 6894 -579 4 762 1074 147 13 12 chr1 23256085 23256280 -173939152 + ORR1A2 LTR MaLR 1 212 -134 4 762 396 59 0 0 chr1 23256650 23256701 -173938731 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 762 377 153 14 0 chr1 23257115 23257187 -173938245 + CT-rich Low_complexity Low_complexity 2 74 0 4 762 797 75 5 12 chr1 23257189 23257319 -173938113 - B1_Mus2 SINE Alu 0 149 24 4 762 441 274 13 82 chr1 23257319 23257348 -173938084 - ID_B1 SINE B4 0 224 77 4 762 22 35 0 0 chr1 23257551 23257580 -173937852 + AT_rich Low_complexity Low_complexity 1 29 0 4 762 1133 116 35 0 chr1 23257688 23257861 -173937571 + B2_Mm1t SINE B2 1 179 -14 4 762 346 166 12 0 chr1 23257926 23257995 -173937437 + B2_Mm2 SINE B2 47 119 -97 4 762 333 0 0 0 chr1 23258007 23258044 -173937388 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 762 864 176 21 0 chr1 23258216 23258358 -173937074 + B1_Mur4 SINE Alu 1 145 -5 4 762 228 303 71 27 chr1 23258763 23258875 -173936557 - RMER15 LTR ERVL 0 575 459 4 762 342 248 162 35 chr1 23259008 23259150 -173936282 - RMER15 LTR ERVL -414 161 2 4 762 235 198 0 172 chr1 23259426 23259542 -173935890 + Arthur1B DNA Tip100 843 938 -287 4 762 1189 48 0 14 chr1 23259787 23259935 -173935497 + B1_Mus2 SINE Alu 2 147 0 4 762 261 139 0 0 chr1 23261479 23261522 -173933910 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 762 1134 269 73 6 chr1 23261808 23262137 -173933295 + ORR1D2 LTR MaLR 1 351 -19 4 762 406 257 41 2 chr1 23262344 23262457 -173932975 + PB1D10 SINE Alu 1 127 0 4 762 22 70 0 0 chr1 23263166 23263209 -173932223 + GC_rich Low_complexity Low_complexity 1 43 0 4 762 615 98 0 0 chr1 23263325 23263417 -173932015 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 762 195 42 0 0 chr1 23263930 23263954 -173931478 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 762 414 354 52 26 chr1 23266323 23266552 -173928880 + MIRb SINE MIR 20 254 -14 4 762 180 315 14 0 chr1 23267136 23267209 -173928223 - MIRc SINE MIR -16 252 179 4 762 764 252 51 42 chr1 23267881 23268117 -173927315 - MER2 DNA MER2_type -13 332 95 4 762 402 298 41 34 chr1 23268134 23268280 -173927152 - B1F SINE Alu -1 148 2 4 762 315 0 0 0 chr1 23268288 23268323 -173927109 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 762 366 23 0 0 chr1 23268521 23268564 -173926868 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 762 796 282 13 7 chr1 23269507 23269708 -173925724 - B3 SINE B2 -3 213 13 4 762 491 82 14 0 chr1 23271590 23271663 -173923769 + (GA)n Simple_repeat Simple_repeat 2 75 0 4 762 265 61 0 0 chr1 23271664 23271697 -173923735 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 4 762 189 238 78 16 chr1 23273372 23273436 -173921996 - MIR3 SINE MIR 0 208 141 4 762 182 327 18 0 chr1 23273656 23273711 -173921721 - MIRc SINE MIR -97 171 116 4 762 207 0 0 0 chr1 23274461 23274484 -173920948 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 4 762 284 229 28 14 chr1 23274530 23274601 -173920831 - PB1 SINE Alu -2 125 54 5 762 413 198 161 65 chr1 23274640 23274764 -173920668 - B1_Mm SINE Alu -8 139 4 5 762 23 33 0 0 chr1 23275401 23275431 -173920001 + AT_rich Low_complexity Low_complexity 1 30 0 5 762 375 302 99 16 chr1 23275705 23275826 -173919606 + ID_B1 SINE B4 76 206 -18 5 762 217 277 0 0 chr1 23281923 23281970 -173913462 + RSINE1 SINE B4 5 51 -114 5 762 202 83 167 0 chr1 23283727 23283763 -173911669 - MIRm SINE MIR -111 165 124 5 762 1006 253 52 146 chr1 23285537 23285940 -173909492 - MTEb LTR MaLR -2 377 13 5 762 182 233 109 65 chr1 23288295 23288387 -173907045 + L2c LINE L2 3284 3379 -8 5 762 3262 29 34 0 chr1 23288722 23289105 -173906327 + MTA_Mm LTR MaLR 1 396 0 5 762 199 103 0 0 chr1 23289305 23289334 -173906098 - L3 LINE CR1 -1092 3397 3369 5 762 222 260 32 19 chr1 23289480 23289582 -173905850 - L2b LINE L2 -1 3425 3271 5 762 28 0 0 0 chr1 23290752 23290780 -173904652 + AT_rich Low_complexity Low_complexity 1 28 0 5 762 194 241 111 0 chr1 23290945 23290999 -173904433 - MIR SINE MIR -164 98 39 5 762 199 54 54 0 chr1 23291500 23291537 -173903895 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 762 213 39 0 0 chr1 23292489 23292515 -173902917 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 762 192 40 0 0 chr1 23292555 23292580 -173902852 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 762 367 295 48 55 chr1 23293299 23293464 -173901968 - L1MEf LINE L1 -4182 2018 1855 5 762 1205 61 0 0 chr1 23294367 23294514 -173900918 + B1_Mus2 SINE Alu 1 147 0 5 762 21 57 0 0 chr1 23295235 23295270 -173900162 + AT_rich Low_complexity Low_complexity 1 35 0 5 762 204 40 0 0 chr1 23295592 23295617 -173899815 + (T)n Simple_repeat Simple_repeat 1 25 0 5 762 419 304 30 37 chr1 23295977 23296141 -173899291 - RSINE1 SINE B4 0 165 3 5 762 261 0 0 0 chr1 23296686 23296715 -173898717 + (TTA)n Simple_repeat Simple_repeat 2 30 0 5 762 302 240 169 24 chr1 23298781 23298905 -173896527 + B1F SINE Alu 3 144 -5 5 762 25 0 0 0 chr1 23299453 23299478 -173895954 + AT_rich Low_complexity Low_complexity 1 25 0 5 762 23 0 0 0 chr1 23299615 23299638 -173895794 + AT_rich Low_complexity Low_complexity 1 23 0 5 762 1623 89 11 53 chr1 23300383 23300645 -173894787 + L1_Mus2 LINE L1 6316 6566 0 5 762 518 299 96 15 chr1 23301281 23301417 -173894015 + RSINE1 SINE B4 13 159 -6 5 762 22 94 0 0 chr1 23301619 23301683 -173893749 + AT_rich Low_complexity Low_complexity 1 64 0 5 762 36199 35 0 0 chr1 23302569 23307949 -173887483 - L1Md_T LINE L1 0 6585 1206 5 762 323 0 0 0 chr1 23307915 23307955 -173887477 - L1Md_Gf LINE L1 -5380 1142 1103 5 762 2145 96 65 20 chr1 23307955 23308306 -173887126 + IAPLTR1_Mm LTR ERVK 1 367 0 5 762 8324 82 43 9 chr1 23308306 23309569 -173885863 + IAPEz-int LTR ERVK 8 1313 -5168 5 762 27385 23 1 2 chr1 23309568 23312842 -173882590 + IAPEz-int LTR ERVK 3210 6479 -2 5 762 2145 96 65 20 chr1 23312844 23313195 -173882237 + IAPLTR1_Mm LTR ERVK 1 367 0 5 762 8917 10 0 0 chr1 23313195 23314254 -173881178 - L1Md_T LINE L1 -5414 1108 50 5 762 24 0 0 0 chr1 23314431 23314455 -173880977 + AT_rich Low_complexity Low_complexity 1 24 0 5 762 624 104 26 0 chr1 23314523 23314638 -173880794 - L1_Mus3 LINE L1 -5 6633 6516 5 762 6159 119 18 25 chr1 23314856 23316262 -173879170 - Lx LINE L1 -6 6648 5261 5 762 717 342 49 31 chr1 23316761 23317048 -173878384 + B4 SINE B4 1 292 0 5 762 4709 97 86 10 chr1 23317408 23318128 -173877304 - L1_Mus2 LINE L1 0 6566 5792 5 762 12453 130 29 13 chr1 23318128 23320864 -173874568 + L1Md_F LINE L1 300 3077 -740 5 762 816 40 0 0 chr1 23320864 23320964 -173874468 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 5 762 12453 107 15 7 chr1 23320964 23321056 -173874376 + L1Md_F LINE L1 3078 3173 -644 5 762 1426 6 0 0 chr1 23321983 23322148 -173873284 - L1Md_T LINE L1 0 6582 6418 5 762 8982 12 0 0 chr1 23322148 23323257 -173872175 + L1Md_T LINE L1 4809 5917 -665 5 762 21 0 0 0 chr1 23323746 23323767 -173871665 + AT_rich Low_complexity Low_complexity 1 21 0 5 762 342 183 0 14 chr1 23323781 23323853 -173871579 - Lx7 LINE L1 -6 7690 7620 5 762 241 306 57 41 chr1 23324578 23324772 -173870660 + L1MC4 LINE L1 5322 5518 -2364 5 762 292 258 39 49 chr1 23324855 23324957 -173870475 - RMER15 LTR ERVL -17 558 458 5 762 397 309 8 0 chr1 23324958 23325084 -173870348 - Lx8 LINE L1 -301 7172 7046 5 762 227 261 22 11 chr1 23325199 23325288 -173870144 + L1MC4 LINE L1 5791 5880 -2002 5 762 232 274 27 0 chr1 23325967 23326040 -173869392 + L1MC4 LINE L1 6711 6785 -1257 5 762 1031 274 123 3 chr1 23326490 23326808 -173868624 + MTE2b LTR MaLR 1 356 -23 5 762 3366 23 10 0 chr1 23326877 23327269 -173868163 - MTA_Mm LTR MaLR 0 396 1 5 762 1160 269 121 6 chr1 23327393 23327756 -173867676 - MTD LTR MaLR -14 405 1 5 762 921 154 120 74 chr1 23329053 23329362 -173866070 - Lx9 LINE L1 -6 7638 7316 5 762 25 31 0 0 chr1 23329477 23329509 -173865923 + AT_rich Low_complexity Low_complexity 1 32 0 5 762 369 0 0 0 chr1 23330016 23330057 -173865375 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 95 1230 34 7 0 chr1 23330720 23330866 -173864566 - B1_Mus2 SINE Alu 0 147 1 5 763 846 0 0 0 chr1 23331380 23331474 -173863958 + (TAAAA)n Simple_repeat Simple_repeat 2 95 0 5 763 782 299 119 27 chr1 23331715 23332086 -173863346 - MTD LTR MaLR -14 405 1 5 763 375 228 168 32 chr1 23332324 23332514 -173862918 + Lx9 LINE L1 7421 7636 -8 5 763 216 281 46 15 chr1 23332592 23332657 -173862775 + MIRm SINE MIR 80 146 -130 5 763 333 0 0 0 chr1 23333185 23333222 -173862210 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 763 5467 66 6 7 chr1 23334113 23334789 -173860643 + L1Md_F2 LINE L1 5908 6582 0 5 763 1258 85 0 0 chr1 23335631 23335795 -173859637 + B2_Mm2 SINE B2 1 164 -31 5 763 282 338 77 7 chr1 23336756 23336899 -173858533 + L2a LINE L2 3274 3426 0 5 763 3965 150 97 49 chr1 23337317 23338108 -173857324 + RMER21B LTR ERV1 1 829 -13 5 763 252 0 0 0 chr1 23338147 23338175 -173857257 + (A)n Simple_repeat Simple_repeat 1 28 0 5 763 299 315 81 0 chr1 23338463 23338574 -173856858 + LTR16B LTR ERVL 335 454 -9 5 763 180 0 0 0 chr1 23339877 23339897 -173855535 + (A)n Simple_repeat Simple_repeat 1 20 0 5 763 238 217 0 35 chr1 23340389 23340475 -173854957 + GA-rich Low_complexity Low_complexity 3 85 0 5 763 363 256 45 14 chr1 23340539 23340651 -173854781 - PB1D10 SINE Alu 0 127 6 5 763 189 0 0 0 chr1 23341144 23341165 -173854267 + (A)n Simple_repeat Simple_repeat 1 21 0 5 763 523 415 6 0 chr1 23341917 23342088 -173853344 + FordPrefect DNA Tip100 251 422 -1261 5 763 35 0 0 0 chr1 23342164 23342199 -173853233 + AT_rich Low_complexity Low_complexity 1 35 0 5 763 228 163 0 0 chr1 23344387 23344430 -173851002 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 763 1152 134 42 26 chr1 23344713 23344905 -173850527 + B2_Mm2 SINE B2 1 195 0 5 763 814 151 6 64 chr1 23344922 23345078 -173850354 + B1_Mus1 SINE Alu 1 147 -1 5 763 1165 86 0 0 chr1 23345079 23345219 -173850213 + B1_Mus1 SINE Alu 1 140 -8 5 763 266 252 117 47 chr1 23345279 23345450 -173849982 - MamRep4096 DNA hAT? -224 202 20 5 763 2043 56 4 4 chr1 23345998 23346248 -173849184 - L1_Mus2 LINE L1 0 6566 6317 5 763 712 96 10 0 chr1 23346246 23346350 -173849082 - Lx2 LINE L1 -2 6995 6891 5 763 251 228 80 98 chr1 23346353 23346435 -173848997 + Tigger13a DNA MER2_type 410 493 -278 5 763 4275 62 27 11 chr1 23346435 23346955 -173848477 + L1_Mus1 LINE L1 6040 6567 0 5 763 251 228 80 98 chr1 23346955 23346984 -173848448 + Tigger13a DNA MER2_type 494 519 -252 5 763 1313 266 42 114 chr1 23347188 23347614 -173847818 - MTD LTR MaLR -2 417 19 5 763 360 0 0 0 chr1 23347614 23347654 -173847778 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 763 1313 266 42 114 chr1 23347654 23347676 -173847756 - MTD LTR MaLR -401 18 1 5 763 236 141 76 13 chr1 23350550 23350629 -173844803 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 763 650 56 11 0 chr1 23350692 23350781 -173844651 + URR1B DNA MER1_type 115 204 -21 5 763 285 329 13 59 chr1 23351404 23351469 -173843963 - RMER12 LTR ERVK -463 859 795 5 763 2638 61 0 10 chr1 23351469 23351782 -173843650 + RLTR10E LTR ERVK 1 310 -1 5 763 285 329 13 59 chr1 23351782 23351868 -173843564 - RMER12 LTR ERVK -528 794 716 5 763 893 204 11 28 chr1 23352386 23352567 -173842865 - RMER2 LTR ERV1 -389 178 1 5 763 1245 62 0 12 chr1 23353840 23354002 -173841430 - B2_Mm2 SINE B2 -31 164 5 5 763 374 188 10 0 chr1 23354662 23354763 -173840669 + (TG)n Simple_repeat Simple_repeat 1 102 0 5 763 257 287 109 34 chr1 23355502 23355621 -173839811 + MLT1J2 LTR MaLR 282 409 -39 5 763 1196 62 7 0 chr1 23356140 23356285 -173839147 + B1_Mm SINE Alu 2 147 0 5 763 231 146 0 0 chr1 23356285 23356340 -173839092 + (A)n Simple_repeat Simple_repeat 1 55 0 5 763 827 83 8 0 chr1 23358275 23358396 -173837036 + (TC)n Simple_repeat Simple_repeat 1 122 0 5 763 981 25 8 0 chr1 23359357 23359478 -173835954 + B1_Mus1 SINE Alu 27 148 0 5 763 441 133 0 0 chr1 23359478 23359553 -173835879 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 5 763 229 282 89 13 chr1 23361206 23361285 -173834147 - MIRb SINE MIR -96 172 88 5 763 22 0 0 0 chr1 23362645 23362667 -173832765 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 635 252 6 77 chr1 23362708 23362734 -173832698 - B3 SINE B2 -13 203 185 5 763 2709 19 72 34 chr1 23362734 23363054 -173832378 - IAPEY3_LTR LTR ERVK 0 332 1 5 763 635 252 6 77 chr1 23363054 23363195 -173832237 - B3 SINE B2 -32 184 48 5 763 218 333 0 0 chr1 23363148 23363205 -173832227 - B4A SINE B4 -235 57 1 5 763 758 167 20 59 chr1 23363237 23363390 -173832042 - B1_Mur3 SINE Alu 0 149 3 5 763 1098 94 44 0 chr1 23364022 23364182 -173831250 - B2_Mm2 SINE B2 -1 194 28 5 763 1663 91 104 0 chr1 23364182 23364423 -173831009 - L1_Mus3 LINE L1 0 6638 6373 6 763 222 296 165 50 chr1 23365512 23365633 -173829799 - MIRb SINE MIR -140 136 2 6 763 435 52 0 0 chr1 23366095 23366153 -173829279 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 763 555 43 0 0 chr1 23366153 23366223 -173829209 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 763 1126 149 70 0 chr1 23366726 23366927 -173828505 + URR1A DNA MER1_type 1 215 -11 6 763 247 217 33 0 chr1 23366927 23366987 -173828445 + URR1A DNA MER1_type 153 214 -12 6 763 250 226 32 0 chr1 23366985 23367047 -173828385 + URR1A DNA MER1_type 151 214 -12 6 763 250 226 32 0 chr1 23367045 23367107 -173828325 + URR1A DNA MER1_type 151 214 -12 6 763 250 226 32 0 chr1 23367105 23367167 -173828265 + URR1A DNA MER1_type 151 214 -12 6 763 278 210 32 0 chr1 23367165 23367227 -173828205 + URR1A DNA MER1_type 151 214 -12 6 763 301 219 27 0 chr1 23367225 23367298 -173828134 + URR1A DNA MER1_type 151 225 -1 6 763 24 0 0 0 chr1 23367540 23367564 -173827868 + AT_rich Low_complexity Low_complexity 1 24 0 6 763 258 32 0 0 chr1 23368298 23368329 -173827103 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 763 252 0 0 0 chr1 23368329 23368356 -173827076 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 763 638 252 19 13 chr1 23368371 23368528 -173826904 - RSINE1 SINE B4 -5 160 3 6 763 982 199 137 20 chr1 23369020 23369312 -173826120 - Lx9 LINE L1 -2 7642 7317 6 763 5545 67 98 0 chr1 23369319 23370041 -173825391 - L1_Mus2 LINE L1 0 6566 5774 6 763 940 178 12 144 chr1 23370174 23370252 -173825180 + MT2A LTR ERVL 3 80 -453 6 763 974 121 0 6 chr1 23370252 23370410 -173825022 + (TTTC)n Simple_repeat Simple_repeat 3 159 0 6 763 940 223 27 98 chr1 23370410 23370824 -173824608 + MT2A LTR ERVL 81 566 -35 6 763 6470 55 1 1 chr1 23371663 23372468 -173822964 + L1_Mus1 LINE L1 5814 6567 0 6 763 766 242 53 43 chr1 23374412 23374619 -173820813 - B3 SINE B2 -7 209 1 6 763 238 280 34 40 chr1 23375496 23375671 -173819761 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 6 763 387 0 0 0 chr1 23376538 23376581 -173818851 + (T)n Simple_repeat Simple_repeat 1 43 0 6 763 356 267 88 7 chr1 23377627 23377763 -173817669 + Tigger7 DNA MER2_type 2217 2363 -128 6 763 1392 183 78 20 chr1 23378061 23378357 -173817075 + ORR1C1 LTR MaLR 1 313 -65 6 763 216 184 0 0 chr1 23378374 23378412 -173817020 + MIRc SINE MIR 112 149 -119 6 763 257 292 133 11 chr1 23379403 23379493 -173815939 - B3 SINE B2 -11 205 105 6 763 243 341 65 21 chr1 23380499 23380592 -173814840 + PB1D7 SINE Alu 23 119 -1 6 763 653 241 42 36 chr1 23380600 23380768 -173814664 + B3A SINE B2 42 210 -6 6 763 24 0 0 0 chr1 23380768 23380792 -173814640 + AT_rich Low_complexity Low_complexity 1 24 0 6 763 222 37 0 0 chr1 23382903 23382930 -173812502 + (A)n Simple_repeat Simple_repeat 1 27 0 6 763 193 296 67 53 chr1 23383593 23383668 -173811764 - MIR SINE MIR -107 101 26 6 763 1367 233 134 13 chr1 23384194 23384446 -173810986 - MTD LTR MaLR 0 419 135 6 763 426 85 0 0 chr1 23384446 23384505 -173810927 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 763 1367 233 134 13 chr1 23384505 23384626 -173810806 - MTD LTR MaLR -285 134 1 6 763 396 0 0 0 chr1 23385683 23385727 -173809705 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 763 422 342 86 0 chr1 23387274 23387426 -173808006 + MIRc SINE MIR 37 201 -67 6 763 386 307 196 38 chr1 23387454 23388219 -173807213 + L2 LINE L2 1649 2534 -885 6 763 40 21 0 0 chr1 23389278 23389325 -173806107 + AT_rich Low_complexity Low_complexity 1 47 0 6 763 22 94 0 0 chr1 23390004 23390068 -173805364 + GC_rich Low_complexity Low_complexity 1 64 0 6 763 239 79 0 26 chr1 23390083 23390122 -173805310 + (CCCCG)n Simple_repeat Simple_repeat 2 39 0 6 763 247 200 13 79 chr1 23391002 23391078 -173804354 + MIRc SINE MIR 79 149 -119 6 763 289 248 82 45 chr1 23391178 23391288 -173804144 + MER65D LTR ERV1 3 116 -357 6 763 978 224 62 12 chr1 23391920 23392160 -173803272 - Lx9 LINE L1 -280 7364 7113 6 763 358 215 0 100 chr1 23392155 23392305 -173803127 + Lx9 LINE L1 7510 7644 0 6 763 819 346 114 20 chr1 23392318 23392766 -173802666 + MLT1H1 LTR MaLR 48 537 -18 6 763 1509 225 93 8 chr1 23393188 23393565 -173801867 - MTD LTR MaLR -10 409 1 6 763 295 356 19 0 chr1 23393568 23393672 -173801760 + PB1 SINE Alu 22 127 0 6 763 992 172 194 12 chr1 23393777 23394030 -173801402 + ORR1B1 LTR MaLR 6 304 -90 6 763 467 299 94 47 chr1 23396600 23396940 -173798492 + RLTR15 LTR ERVK 1 356 -3 6 763 243 88 0 0 chr1 23397402 23397436 -173797996 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 6 763 392 358 40 6 chr1 23397579 23397756 -173797676 + MLT1F LTR MaLR 71 253 -295 6 763 1474 174 153 22 chr1 23397905 23398284 -173797148 - RLTR28 LTR ERVL -1 523 1 6 763 228 309 29 78 chr1 23398912 23399014 -173796418 + LTR33A_ LTR ERVL 166 262 -269 6 763 863 129 90 0 chr1 23400131 23400286 -173795146 - URR1A DNA MER1_type 0 226 58 6 763 455 280 47 57 chr1 23400375 23400804 -173794628 + L1MD LINE L1 5076 5500 -679 6 763 22 0 0 0 chr1 23401219 23401241 -173794191 + AT_rich Low_complexity Low_complexity 1 22 0 6 763 3019 32 3 0 chr1 23401407 23401752 -173793680 + ORR1A0 LTR MaLR 1 346 0 6 763 13188 62 29 11 chr1 23401752 23403513 -173791919 + ORR1A0-int LTR MaLR 1 1792 0 6 763 2706 40 65 0 chr1 23403513 23403838 -173791594 + ORR1A0 LTR MaLR 1 346 0 6 763 30 59 0 0 chr1 23404055 23404106 -173791326 + AT_rich Low_complexity Low_complexity 1 51 0 6 763 408 111 0 0 chr1 23405161 23405224 -173790208 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 763 356 325 60 20 chr1 23406411 23406755 -173788677 + L1ME2 LINE L1 5740 6095 -84 6 763 234 81 0 0 chr1 23406808 23406845 -173788587 + (T)n Simple_repeat Simple_repeat 1 37 0 6 763 428 291 0 0 chr1 23406867 23406984 -173788448 - PB1D10 SINE Alu 0 117 1 6 763 963 146 0 0 chr1 23407130 23407274 -173788158 + B1_Mus1 SINE Alu 5 148 0 6 763 180 0 0 0 chr1 23407282 23407302 -173788130 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 6 763 450 0 0 0 chr1 23408663 23408713 -173786719 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 763 859 144 0 0 chr1 23409074 23409213 -173786219 - ORR1B1 LTR MaLR -8 386 248 6 763 329 0 24 0 chr1 23409214 23409255 -173786177 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 763 419 313 97 26 chr1 23409328 23409748 -173785684 + L1ME2z LINE L1 5635 6109 -1676 6 763 406 203 66 25 chr1 23409765 23409886 -173785546 + L1VL2 LINE L1 68 193 -6142 6 763 31358 103 24 8 chr1 23409878 23415814 -173779618 + L1_Mus2 LINE L1 536 6566 0 6 763 407 244 241 11 chr1 23415965 23416226 -173779206 + L1ME2z LINE L1 6357 6677 -1205 6 763 588 182 0 0 chr1 23417471 23417608 -173777824 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 763 855 159 0 0 chr1 23417622 23417792 -173777640 + (CA)n Simple_repeat Simple_repeat 2 171 0 6 763 292 316 0 0 chr1 23418554 23418633 -173776799 - ID4 SINE ID -3 80 2 6 763 356 321 18 9 chr1 23418842 23418955 -173776477 - RSINE1 SINE B4 -8 157 44 6 763 2292 105 6 58 chr1 23419428 23419773 -173775659 + ORR1A2 LTR MaLR 1 327 0 6 763 287 75 25 0 chr1 23419871 23419911 -173775521 - Lx3_Mus LINE L1 -1305 5704 5664 6 763 7999 99 83 6 chr1 23419906 23420108 -173775324 + Lx3_Mus LINE L1 5702 5912 -1097 6 763 507 17 0 0 chr1 23420108 23420168 -173775264 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 6 763 7999 99 83 6 chr1 23420168 23421179 -173774253 + Lx3_Mus LINE L1 5913 7008 -1 6 763 511 62 12 12 chr1 23421551 23421632 -173773800 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 763 467 275 46 0 chr1 23421638 23421769 -173773663 + RSINE1 SINE B4 1 137 -28 6 763 623 217 130 0 chr1 23422640 23422847 -173772585 + Lx9 LINE L1 7411 7644 0 6 763 1228 47 0 0 chr1 23422944 23423092 -173772340 - B1_Mus1 SINE Alu 0 148 1 6 763 201 74 0 0 chr1 23423578 23423605 -173771827 + (TAAG)n Simple_repeat Simple_repeat 1 27 0 6 763 995 148 11 0 chr1 23423633 23423788 -173771644 + B2_Mm2 SINE B2 2 158 -37 6 763 405 0 0 0 chr1 23423788 23423833 -173771599 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 763 995 148 11 0 chr1 23423833 23423853 -173771579 + B2_Mm2 SINE B2 159 178 -17 6 763 257 51 0 25 chr1 23423912 23423952 -173771480 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 6 763 1022 70 0 89 chr1 23423953 23424111 -173771321 - B1_Mus2 SINE Alu -2 145 2 6 763 437 195 0 0 chr1 23424736 23424818 -173770614 - PB1D10 SINE Alu -31 86 5 6 763 21 0 0 0 chr1 23425663 23425684 -173769748 + AT_rich Low_complexity Low_complexity 1 21 0 6 763 914 219 68 109 chr1 23426085 23426546 -173768886 + MT2B LTR ERVL 18 589 -12 6 763 5619 32 1 0 chr1 23426546 23427197 -173768235 - L1Md_A LINE L1 0 6582 5931 6 763 1433 147 4 4 chr1 23428282 23428507 -173766925 - URR1B DNA MER1_type 0 225 1 6 763 426 39 0 0 chr1 23429255 23429307 -173766125 + (TTA)n Simple_repeat Simple_repeat 1 52 0 6 763 286 261 107 9 chr1 23429459 23429571 -173765861 - B1F SINE Alu 0 149 27 6 763 1562 143 67 8 chr1 23429721 23430018 -173765414 - Lx2 LINE L1 0 6997 6717 6 763 289 336 70 31 chr1 23430470 23430599 -173764833 + MLT2B3 LTR ERVL 250 383 -171 6 763 255 250 0 0 chr1 23430694 23430762 -173764670 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 6 763 303 28 0 0 chr1 23431202 23431238 -173764194 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 763 354 259 89 82 chr1 23431394 23431667 -173763765 - RMER20B LTR ERVK -103 413 133 6 763 407 228 36 60 chr1 23432051 23432219 -173763213 + RNLTR23 LTR ERVK 479 642 0 6 763 623 169 8 17 chr1 23432515 23432635 -173762797 + B1_Mus1 SINE Alu 1 119 -29 6 763 1414 95 5 9 chr1 23432728 23432940 -173762492 + L1Md_F2 LINE L1 6360 6570 -12 6 763 476 262 68 42 chr1 23433405 23433596 -173761836 - B4 SINE B4 -89 203 8 6 763 638 238 20 66 chr1 23433864 23434080 -173761352 - B3A SINE B2 -1 215 8 6 763 706 183 18 9 chr1 23434081 23434309 -173761123 + CT-rich Low_complexity Low_complexity 1 230 0 6 763 501 17 0 0 chr1 23434309 23434367 -173761065 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 6 763 875 211 19 29 chr1 23434739 23434944 -173760488 - RMER10B LTR ERVL 0 398 196 6 763 805 115 29 0 chr1 23434944 23435083 -173760349 + (GGAGAA)n Simple_repeat Simple_repeat 6 148 0 6 763 895 222 0 16 chr1 23435087 23435270 -173760162 - RLTR20A LTR ERVK 0 541 362 6 763 6372 90 19 12 chr1 23435358 23436254 -173759178 - Lx LINE L1 -6 6648 5747 7 763 827 88 29 0 chr1 23436282 23436419 -173759013 - MYSERV16_I-int LTR ERVK -1060 1266 1126 7 763 1621 108 9 0 chr1 23436421 23436644 -173758788 - Lx3_Mus LINE L1 -86 6923 6699 7 763 339 85 0 0 chr1 23436680 23436727 -173758705 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 7 763 307 82 61 0 chr1 23436727 23436776 -173758656 - MYSERV16_I-int LTR ERVK -1192 1134 1083 7 763 10383 142 15 13 chr1 23436776 23438542 -173756890 - L1_Mur1 LINE L1 -1562 4324 2555 7 763 397 113 0 31 chr1 23438542 23438606 -173756826 - RMER10B LTR ERVL -334 64 3 6 763 362 216 22 39 chr1 23438638 23438754 -173756678 + CT-rich Low_complexity Low_complexity 62 178 0 7 763 1139 117 0 6 chr1 23438754 23438935 -173756497 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 763 362 216 22 39 chr1 23438935 23438996 -173756436 + polypyrimidine Low_complexity Low_complexity 4 61 0 7 763 2427 198 18 8 chr1 23439886 23440396 -173755036 + RMER5 LTR ERV1 9 523 -11 7 763 682 216 249 12 chr1 23441035 23441208 -173754224 + B3 SINE B2 1 214 -2 7 763 21 57 0 0 chr1 23441209 23441244 -173754188 + AT_rich Low_complexity Low_complexity 1 35 0 7 763 857 135 0 90 chr1 23441520 23441725 -173753707 + RMER17C LTR ERVK 1 187 -223 7 763 306 0 0 0 chr1 23441725 23441759 -173753673 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 763 2151 147 157 42 chr1 23441813 23442290 -173753142 + RMER17C-int LTR ERVK 1485 2016 -1222 7 763 986 141 26 21 chr1 23442289 23442478 -173752954 + RMER17C-int LTR ERVK 2170 2359 -879 7 763 2033 108 248 30 chr1 23442466 23442939 -173752493 + RMER17C-int LTR ERVK 2532 3107 -131 7 763 621 191 0 0 chr1 23443077 23443182 -173752250 + L1Md_F2 LINE L1 403 507 -6131 7 763 29895 75 10 4 chr1 23443177 23448096 -173747336 + L1Md_F2 LINE L1 638 5585 -298 7 763 7009 99 7 2 chr1 23448097 23449071 -173746361 + L1Md_F2 LINE L1 5587 6565 -17 7 763 294 29 0 0 chr1 23449074 23449109 -173746323 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 763 516 16 0 0 chr1 23449109 23449169 -173746263 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 763 414 293 72 72 chr1 23449239 23449518 -173745914 + RLTR41 LTR ERV1 168 446 0 7 763 783 150 0 23 chr1 23449522 23449652 -173745780 + RMER17C-int LTR ERVK 3112 3238 0 7 763 2052 134 53 25 chr1 23449652 23450051 -173745381 + RMER17C LTR ERVK 1 410 0 7 763 1269 45 0 33 chr1 23455094 23455278 -173740154 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 7 763 315 0 0 0 chr1 23455280 23455315 -173740117 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 7 763 204 200 0 0 chr1 23455422 23455472 -173739960 + CT-rich Low_complexity Low_complexity 1 50 0 7 763 213 39 0 0 chr1 23455501 23455527 -173739905 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 763 21 36 0 0 chr1 23455570 23455598 -173739834 + AT_rich Low_complexity Low_complexity 1 28 0 7 763 22 35 0 0 chr1 23455841 23455870 -173739562 + AT_rich Low_complexity Low_complexity 1 29 0 7 763 2286 121 59 5 chr1 23456204 23456577 -173738855 - ORR1B1 LTR MaLR 0 394 2 7 763 1031 292 66 30 chr1 23456975 23457819 -173737613 + L1MA4 LINE L1 5075 5921 -1552 7 763 216 0 0 0 chr1 23457980 23458004 -173737428 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 763 372 311 122 22 chr1 23458164 23458394 -173737038 + L1ME3A LINE L1 5696 5948 -225 7 763 212 0 36 0 chr1 23458394 23458422 -173737010 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 7 763 5595 194 68 16 chr1 23458609 23458694 -173736738 - Lx9 LINE L1 -2 7642 7532 7 763 446 108 12 0 chr1 23458694 23458777 -173736655 + (TA)n Simple_repeat Simple_repeat 2 85 0 7 763 5595 194 68 16 chr1 23458777 23459962 -173735470 - Lx9 LINE L1 -113 7531 6306 7 763 808 276 14 29 chr1 23460036 23460245 -173735187 - B3 SINE B2 -2 214 9 7 763 6160 122 119 4 chr1 23460677 23461674 -173733758 - RLTR13D3 LTR ERVK -2 1112 1 7 764 1206 146 5 9 chr1 23462061 23462282 -173733150 + Lx2A1 LINE L1 6789 7008 0 7 764 678 289 95 56 chr1 23462352 23463071 -173732361 + HAL1b LINE L1 447 1193 -816 7 764 318 231 52 61 chr1 23463082 23463166 -173732266 + BC1_Mm scRNA scRNA 1 85 -67 7 764 4108 78 23 32 chr1 23463166 23463786 -173731646 + Lx3_Mus LINE L1 6396 7009 0 7 764 318 231 52 61 chr1 23463786 23463816 -173731616 + BC1_Mm scRNA scRNA 86 114 -38 7 764 279 0 0 0 chr1 23464481 23464512 -173730920 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 764 3162 42 0 0 chr1 23464550 23464929 -173730503 + L1Md_T LINE L1 6204 6582 0 7 764 299 71 82 0 chr1 23466164 23466249 -173729183 + (TA)n Simple_repeat Simple_repeat 1 92 0 7 764 22 0 0 0 chr1 23466249 23466271 -173729161 + AT_rich Low_complexity Low_complexity 1 22 0 7 764 450 0 0 0 chr1 23466304 23466354 -173729078 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 764 1285 288 51 29 chr1 23466430 23466637 -173728795 + Lx8 LINE L1 6492 6702 -771 7 764 243 0 0 0 chr1 23466637 23466664 -173728768 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 764 1285 288 51 29 chr1 23466664 23466906 -173728526 + Lx8 LINE L1 6703 6951 -522 7 764 2616 84 3 8 chr1 23466926 23467296 -173728136 - Lx2 LINE L1 -1 6996 6629 7 764 320 297 41 25 chr1 23467584 23467705 -173727727 + HAL1b LINE L1 1647 1769 -738 7 764 381 43 0 0 chr1 23467943 23467990 -173727442 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 764 405 0 0 0 chr1 23468100 23468145 -173727287 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 764 276 258 28 123 chr1 23468602 23468639 -173726793 + MT2B LTR ERVL 131 226 -375 7 764 528 43 0 0 chr1 23468639 23468708 -173726724 + B1_Mus2 SINE Alu 1 69 -78 7 764 380 315 11 0 chr1 23468949 23469041 -173726391 + B1F1 SINE Alu 1 93 -56 7 764 227 237 51 0 chr1 23469622 23469681 -173725751 - L2 LINE L2 -1039 2380 2319 7 764 1244 231 119 9 chr1 23470255 23470592 -173724840 + ORR1D1 LTR MaLR 1 374 0 7 764 222 377 0 14 chr1 23470737 23470807 -173724625 - ID4 SINE ID -1 82 14 7 764 24 0 0 0 chr1 23471802 23471826 -173723606 + AT_rich Low_complexity Low_complexity 1 24 0 7 764 1759 165 118 16 chr1 23472153 23472534 -173722898 + MTC LTR MaLR 2 421 0 7 764 634 311 120 47 chr1 23472549 23473039 -173722393 + Arthur1 DNA Tip100 3422 3947 0 7 764 553 261 54 0 chr1 23474405 23474589 -173720843 + Lx9 LINE L1 6831 7024 -620 7 764 462 273 12 68 chr1 23474591 23474752 -173720680 + B3A SINE B2 46 197 -1 7 764 21 57 0 0 chr1 23474755 23474790 -173720642 + AT_rich Low_complexity Low_complexity 1 35 0 7 764 775 267 121 45 chr1 23474809 23475338 -173720094 - L1MC4a LINE L1 -2019 5863 5295 7 764 1122 176 105 96 chr1 23475497 23475935 -173719497 + ORR1C2 LTR MaLR 3 381 -3 7 764 637 158 132 8 chr1 23476328 23476449 -173718983 + B1_Mur2 SINE Alu 12 147 -2 7 764 10753 35 1 0 chr1 23476564 23478589 -173716843 - L1Md_F2 LINE L1 -1 6581 4556 7 764 968 294 58 47 chr1 23478616 23479062 -173716370 - Lx8 LINE L1 -97 7376 6926 7 764 24 0 0 0 chr1 23480613 23480637 -173714795 + AT_rich Low_complexity Low_complexity 1 24 0 7 764 326 267 86 36 chr1 23481465 23481605 -173713827 - B1F SINE Alu 0 149 3 7 764 331 236 68 60 chr1 23481635 23481752 -173713680 - B4A SINE B4 -173 119 2 7 764 345 374 74 62 chr1 23481763 23481889 -173713543 - L1MEd LINE L1 -5581 538 421 7 764 215 0 67 0 chr1 23481889 23481919 -173713513 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7 764 345 374 74 62 chr1 23481919 23482117 -173713315 - L1MEd LINE L1 -5699 420 210 7 764 250 224 26 7 chr1 23482222 23482375 -173713057 + (TA)n Simple_repeat Simple_repeat 1 156 0 7 764 230 224 104 0 chr1 23482751 23482818 -173712614 - PB1D10 SINE Alu -26 91 18 7 764 29 0 0 0 chr1 23482939 23482968 -173712464 + AT_rich Low_complexity Low_complexity 1 29 0 7 764 222 37 0 0 chr1 23483209 23483236 -173712196 + (CACCC)n Simple_repeat Simple_repeat 2 28 0 7 764 834 285 37 14 chr1 23483391 23484068 -173711364 - L1_Rod LINE L1 -4153 1694 1002 7 764 207 170 21 21 chr1 23484390 23484438 -173710994 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 764 744 266 91 8 chr1 23484439 23484682 -173710750 - Lx9 LINE L1 -594 7050 6788 7 764 546 16 0 0 chr1 23484682 23484745 -173710687 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 764 358 176 23 23 chr1 23484842 23484929 -173710503 + L1MB1 LINE L1 5363 5449 -722 7 764 2425 78 9 11 chr1 23484929 23485279 -173710153 - L1_Mus4 LINE L1 -7 6629 6281 7 764 2500 138 47 2 chr1 23485289 23485732 -173709700 + L1_Mm LINE L1 4671 5133 -750 7 764 367 284 100 22 chr1 23485746 23486036 -173709396 + L1MB1 LINE L1 5448 5768 -421 7 764 479 194 9 27 chr1 23486194 23486305 -173709127 + L1MB1 LINE L1 5788 5896 -293 7 764 181 323 168 10 chr1 23488092 23488289 -173707143 + L2 LINE L2 2781 3008 -411 7 764 250 284 52 47 chr1 23488383 23488594 -173706838 + L1M4 LINE L1 4963 5174 -972 7 764 360 0 0 0 chr1 23488632 23488672 -173706760 + (TTA)n Simple_repeat Simple_repeat 2 41 0 7 764 1291 285 37 41 chr1 23488683 23489198 -173706234 + Lx9 LINE L1 6866 7378 -266 7 764 1146 243 87 47 chr1 23489198 23489672 -173705760 - RLTR11A2 LTR ERVK 0 568 1 7 764 237 65 0 0 chr1 23489752 23489783 -173705649 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 764 481 292 0 0 chr1 23489961 23490091 -173705341 + Lx8 LINE L1 6963 7092 -381 7 764 408 88 0 0 chr1 23491018 23491075 -173704357 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 764 282 233 123 28 chr1 23491125 23491231 -173704201 - L1_Mur3 LINE L1 -2080 3800 3685 7 764 207 0 0 0 chr1 23491937 23491960 -173703472 + (T)n Simple_repeat Simple_repeat 1 23 0 7 764 432 0 0 0 chr1 23492125 23492173 -173703259 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 764 240 232 54 0 chr1 23492191 23492247 -173703185 - RMER15 LTR ERVL -109 466 408 7 764 439 318 0 37 chr1 23493035 23493169 -173702263 - RSINE1 SINE B4 -35 130 2 7 764 1047 67 18 12 chr1 23493230 23493396 -173702036 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 7 764 569 89 65 0 chr1 23493424 23493547 -173701885 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 7 764 1157 81 0 0 chr1 23493550 23493698 -173701734 + B1_Mus1 SINE Alu 1 148 0 7 764 478 270 95 63 chr1 23495301 23495459 -173699973 - B4A SINE B4 -6 286 124 7 764 423 78 0 0 chr1 23495553 23495617 -173699815 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 764 782 276 129 34 chr1 23495631 23495894 -173699538 - B4 SINE B4 -3 289 2 7 764 181 220 117 17 chr1 23496571 23496631 -173698801 + MER5B DNA MER1_type 61 126 -52 7 764 188 86 29 0 chr1 23496711 23496746 -173698686 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 764 219 120 0 74 chr1 23497462 23497516 -173697916 + A-rich Low_complexity Low_complexity 4 53 0 7 764 192 407 9 9 chr1 23498049 23498163 -173697269 - MIRb SINE MIR -20 248 135 8 764 440 224 106 148 chr1 23498262 23498431 -173697001 + B3A SINE B2 2 165 -33 8 764 558 0 0 0 chr1 23498431 23498493 -173696939 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 764 440 224 106 148 chr1 23498493 23498512 -173696920 + B3A SINE B2 166 182 -16 8 764 489 34 0 0 chr1 23498513 23498572 -173696860 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 764 268 282 174 44 chr1 23498946 23499138 -173696294 - MIR SINE MIR -7 255 44 8 764 2965 165 171 27 chr1 23499213 23499837 -173695595 - RMER6D LTR ERVK -4 716 3 8 764 193 207 11 11 chr1 23501080 23501168 -173694264 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 764 462 18 0 0 chr1 23501199 23501254 -173694178 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 764 225 261 0 14 chr1 23501366 23501436 -173693996 - LTR50 LTR ERVL -17 778 710 3 764 205 58 18 71 chr1 23502818 23502874 -173692558 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 764 895 91 35 24 chr1 23502873 23503027 -173692405 + CT-rich Low_complexity Low_complexity 16 172 0 5 764 1435 28 0 11 chr1 23503027 23503209 -173692223 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6 764 895 91 35 24 chr1 23503209 23503223 -173692209 + polypyrimidine Low_complexity Low_complexity 2 15 0 7 764 255 288 116 12 chr1 23503750 23503922 -173691510 - L1M5 LINE L1 -2366 3780 3591 8 764 279 270 20 0 chr1 23504373 23504473 -173690959 - L1M5 LINE L1 -3130 3016 2915 8 764 1047 80 0 0 chr1 23504519 23504656 -173690776 - B1_Mus2 SINE Alu 0 147 11 9 764 489 255 39 96 chr1 23504524 23504680 -173690752 - B4 SINE B4 -71 221 75 1 764 236 331 0 39 chr1 23504785 23504914 -173690518 - L1M5 LINE L1 -3432 2714 2591 8 764 770 241 77 39 chr1 23504957 23505164 -173690268 + B3 SINE B2 1 215 -1 1 764 499 304 52 6 chr1 23505473 23505645 -173689787 + Tigger7 DNA MER2_type 236 415 -2076 1 764 1408 269 194 45 chr1 23505796 23506479 -173688953 + RMER13A LTR ERVK 1 786 -74 1 764 230 311 32 8 chr1 23506522 23506645 -173688787 - L1M2 LINE L1 -4323 2526 2401 1 764 27671 125 27 9 chr1 23506828 23512910 -173682522 + L1_Mus4 LINE L1 420 6631 -5 1 764 606 259 90 0 chr1 23512973 23513139 -173682293 + B3A SINE B2 1 181 -17 1 764 198 0 0 0 chr1 23513157 23513179 -173682253 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 764 271 333 0 0 chr1 23513236 23513347 -173682085 + L1_Rod LINE L1 2134 2244 -3603 1 764 752 108 22 22 chr1 23513469 23513648 -173681784 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 764 1188 311 83 31 chr1 23513886 23515083 -173680349 + L1M2 LINE L1 2503 3761 -2379 2 764 635 270 24 0 chr1 23515101 23515227 -173680205 + RSINE1 SINE B4 2 130 -35 2 764 213 354 48 43 chr1 23515227 23515287 -173680145 + B2_Mm2 SINE B2 1 187 -8 2 764 261 245 140 47 chr1 23515343 23515450 -173679982 - PB1D7 SINE Alu -3 117 1 2 764 588 65 0 0 chr1 23515454 23515531 -173679901 + (TTTTC)n Simple_repeat Simple_repeat 3 79 0 2 764 423 0 0 0 chr1 23515541 23515588 -173679844 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 764 2170 100 3 15 chr1 23515588 23515914 -173679518 - Lx2 LINE L1 -32 6965 6644 2 764 350 162 25 33 chr1 23516063 23516184 -173679248 + (TA)n Simple_repeat Simple_repeat 1 120 0 2 764 333 117 67 45 chr1 23516200 23516334 -173679098 + (TA)n Simple_repeat Simple_repeat 1 137 0 2 764 905 138 201 5 chr1 23516426 23516615 -173678817 - URR1A DNA MER1_type 0 226 1 2 764 880 241 38 43 chr1 23518992 23519339 -173676093 - RLTR15 LTR ERVK -14 345 1 2 764 563 294 97 5 chr1 23519369 23519554 -173675878 + B4A SINE B4 1 202 -90 3 764 665 63 11 0 chr1 23519559 23519654 -173675778 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 764 734 216 14 24 chr1 23519891 23520100 -173675332 - RMER1A Other Other -2 1028 822 3 764 3629 117 4 13 chr1 23520134 23520671 -173674761 - Lx2 LINE L1 -6 6991 6460 3 764 1378 110 0 5 chr1 23520671 23520881 -173674551 + Lx2 LINE L1 6247 6455 -542 3 764 4185 157 63 77 chr1 23520881 23521778 -173673654 - RMER19B LTR ERVK -17 885 1 3 764 3459 198 33 94 chr1 23521812 23522748 -173672684 - RMER1B Other Other -187 879 1 3 764 228 192 5 5 chr1 23522769 23522824 -173672608 - MIR SINE MIR -103 165 107 3 764 477 255 0 11 chr1 23522892 23522987 -173672445 - B3A SINE B2 -104 94 1 3 764 308 279 61 35 chr1 23523189 23523304 -173672128 - MER3 DNA MER1_type -42 167 50 3 764 384 226 67 130 chr1 23525251 23525459 -173669973 - ORR1E LTR MaLR -164 195 1 3 764 217 229 42 0 chr1 23526188 23526236 -173669196 + (CATA)n Simple_repeat Simple_repeat 1 50 0 4 764 364 292 36 46 chr1 23526238 23526457 -173668975 - RMER12 LTR ERVK -335 987 771 4 764 681 287 106 23 chr1 23526931 23527281 -173668151 + L1MDa LINE L1 18 396 -6237 4 764 290 194 14 0 chr1 23527699 23527771 -173667661 + L1M LINE L1 5325 5397 -900 4 764 314 306 73 64 chr1 23527776 23528016 -173667416 - ORR1D2 LTR MaLR 0 374 134 4 764 35 0 0 0 chr1 23528279 23528314 -173667118 + AT_rich Low_complexity Low_complexity 1 35 0 4 764 41 0 0 0 chr1 23528342 23528383 -173667049 + AT_rich Low_complexity Low_complexity 1 41 0 4 764 235 172 17 17 chr1 23528389 23528448 -173666984 + L1MD2 LINE L1 6277 6335 -24 4 764 2279 161 21 5 chr1 23528897 23529278 -173666154 + ORR1B1 LTR MaLR 6 392 -2 4 764 309 82 0 0 chr1 23529444 23529493 -173665939 + (T)n Simple_repeat Simple_repeat 1 49 0 4 764 970 247 63 126 chr1 23529852 23530218 -173665214 + ORR1E LTR MaLR 15 357 -2 5 764 347 301 70 21 chr1 23530250 23530437 -173664995 + Helitron2Na_Mam RC Helitron? 93 288 -36 5 764 1008 279 81 63 chr1 23531142 23531562 -173663870 - MTD LTR MaLR -13 406 1 5 764 1948 168 8 48 chr1 23531719 23532094 -173663338 + ORR1B2 LTR MaLR 1 360 -7 5 764 243 0 0 0 chr1 23532275 23532302 -173663130 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 764 4080 40 6 6 chr1 23532307 23532804 -173662628 - L1Md_F3 LINE L1 -14 6570 6074 5 764 301 0 0 0 chr1 23532804 23532842 -173662590 + L1Md_F3 LINE L1 6029 6066 -518 5 764 328 298 16 24 chr1 23533102 23533229 -173662203 - Charlie9 DNA MER1_type -2631 126 1 5 764 208 321 71 47 chr1 23533283 23533368 -173662064 + MIRm SINE MIR 103 189 -87 5 764 1222 315 67 24 chr1 23533537 23534249 -173661183 + L1MD2 LINE L1 5613 6355 -4 5 764 261 272 0 61 chr1 23534481 23534661 -173660771 + (CACCC)n Simple_repeat Simple_repeat 5 173 0 5 764 426 290 32 16 chr1 23535028 23535154 -173660278 - MTB LTR MaLR -3 376 249 6 764 3840 288 129 62 chr1 23535376 23536821 -173658611 - ORR1E-int LTR MaLR -34 1546 5 6 764 345 326 163 38 chr1 23536822 23537141 -173658291 - ORR1E LTR MaLR 0 359 1 6 764 451 138 13 36 chr1 23537182 23537276 -173658156 - MTB LTR MaLR -240 156 69 6 764 1863 116 15 0 chr1 23537235 23537503 -173657929 + MTB LTR MaLR 127 398 -2 6 764 246 163 23 0 chr1 23537520 23537563 -173657869 + GA-rich Low_complexity Low_complexity 4 47 0 6 764 1132 97 11 6 chr1 23537564 23537741 -173657691 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 764 743 148 7 0 chr1 23537743 23537878 -173657554 + GA-rich Low_complexity Low_complexity 3 138 0 6 764 230 258 0 83 chr1 23537906 23537978 -173657454 - RLTR18 LTR ERVK -359 257 192 6 764 892 256 41 76 chr1 23537992 23538283 -173657149 - RLTR18 LTR ERVK -331 285 5 6 764 2079 193 78 26 chr1 23538290 23538791 -173656641 - RLTR11A2 LTR ERVK 0 527 1 6 764 358 191 118 0 chr1 23539929 23540039 -173655393 - Lx9 LINE L1 -3 7641 7519 6 764 1272 70 11 42 chr1 23540041 23541118 -173654314 + (TAGA)n Simple_repeat Simple_repeat 1 1043 0 7 764 4094 182 45 13 chr1 23541122 23541967 -173653465 - Lx9 LINE L1 -188 7456 6585 6 764 300 326 7 78 chr1 23542360 23542513 -173652919 + MamGypLTR1d LTR Gypsy 606 747 -66 7 764 31 26 0 0 chr1 23542513 23542551 -173652881 + AT_rich Low_complexity Low_complexity 1 38 0 7 764 1652 145 67 15 chr1 23543840 23544231 -173651201 + ORR1A3 LTR MaLR 1 394 0 7 764 261 0 0 0 chr1 23544354 23544383 -173651049 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 764 272 297 41 67 chr1 23544779 23544974 -173650458 + B3A SINE B2 4 193 -5 7 764 263 305 0 188 chr1 23545137 23545254 -173650178 - MER5A1 DNA MER1_type -69 97 3 7 764 491 232 140 7 chr1 23545412 23545555 -173649877 + MER5A1 DNA MER1_type 2 163 -3 7 764 24 0 0 0 chr1 23545649 23545673 -173649759 + AT_rich Low_complexity Low_complexity 1 24 0 7 764 215 31 31 0 chr1 23545772 23545804 -173649628 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 7 764 250 311 9 46 chr1 23545807 23545915 -173649517 - B3A SINE B2 -14 184 81 8 764 1717 147 13 137 chr1 23546361 23546747 -173648685 - ORR1B1 LTR MaLR -28 366 29 8 764 1130 258 140 11 chr1 23546878 23547235 -173648197 - MTD LTR MaLR -16 403 1 8 764 343 131 0 187 chr1 23547243 23547318 -173648114 + ID SINE ID 15 75 -149 8 764 252 0 0 0 chr1 23547718 23547746 -173647686 + (A)n Simple_repeat Simple_repeat 1 28 0 8 764 323 326 50 55 chr1 23548577 23548778 -173646654 + MIR SINE MIR 22 221 -41 8 764 356 43 71 0 chr1 23548923 23548993 -173646439 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 8 764 1002 75 0 0 chr1 23549000 23549133 -173646299 - B1_Mus1 SINE Alu 0 148 16 8 764 986 247 120 28 chr1 23549144 23549461 -173645971 - MTE2b LTR MaLR -12 367 22 8 764 29 28 0 0 chr1 23550763 23550799 -173644633 + AT_rich Low_complexity Low_complexity 1 36 0 8 764 3860 34 6 2 chr1 23550814 23551282 -173644150 - L1Md_F3 LINE L1 -2 6582 6113 9 764 895 148 183 41 chr1 23551763 23551960 -173643472 + URR1A DNA MER1_type 2 226 0 9 764 234 266 8 174 chr1 23552972 23553104 -173642328 - LTR33A LTR ERVL -7 513 404 9 764 1109 316 61 85 chr1 23553339 23553965 -173641467 - RLTR18 LTR ERVK -5 611 1 9 764 423 0 0 0 chr1 23554704 23554751 -173640681 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 764 21 0 0 0 chr1 23555548 23555569 -173639863 + AT_rich Low_complexity Low_complexity 1 21 0 9 764 374 257 43 14 chr1 23556274 23556412 -173639020 - L1MD1 LINE L1 -11 6231 6090 9 764 506 298 55 35 chr1 23556642 23557130 -173638302 - L1MEf LINE L1 -3540 2606 2120 9 764 245 295 13 0 chr1 23557144 23557222 -173638210 - L1MEf LINE L1 -4304 1938 1860 9 764 450 319 8 0 chr1 23557399 23557518 -173637914 + RSINE1 SINE B4 44 163 -2 9 764 619 301 44 9 chr1 23557536 23557851 -173637581 + L1MD1 LINE L1 4390 4715 -1431 9 764 540 190 89 16 chr1 23557894 23558017 -173637415 + B3A SINE B2 1 132 -66 1 764 387 0 0 0 chr1 23558047 23558090 -173637342 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 764 324 280 122 41 chr1 23558125 23558487 -173636945 + L1MD1 LINE L1 4793 5183 -963 9 764 1452 126 14 0 chr1 23558495 23558717 -173636715 + URR1A DNA MER1_type 2 226 0 1 764 720 298 99 23 chr1 23559156 23559640 -173635792 + L1MD1 LINE L1 5710 6230 -12 9 764 538 347 89 11 chr1 23560362 23560633 -173634799 - LTR16B1 LTR ERVL -6 474 183 1 764 1675 281 40 27 chr1 23560957 23561553 -173633879 - Lx7 LINE L1 -398 7298 6695 1 764 479 247 149 11 chr1 23561614 23561700 -173633732 + Lx7 LINE L1 6092 6194 -1502 1 764 606 71 0 0 chr1 23561700 23561784 -173633648 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 764 479 247 149 11 chr1 23561784 23561885 -173633547 + Lx7 LINE L1 6195 6305 -1391 1 764 3264 75 22 11 chr1 23564239 23564687 -173630745 + L1Md_F2 LINE L1 6130 6582 0 1 764 209 358 79 44 chr1 23564813 23564927 -173630505 + MIR3 SINE MIR 7 124 -84 1 764 405 39 0 0 chr1 23564958 23565009 -173630423 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 1 764 741 134 0 66 chr1 23565128 23565280 -173630152 + Lx LINE L1 6511 6652 -2 1 764 195 114 0 0 chr1 23565285 23565320 -173630112 + (A)n Simple_repeat Simple_repeat 1 35 0 1 764 387 0 0 0 chr1 23566287 23566330 -173629102 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 764 324 0 0 0 chr1 23567125 23567161 -173628271 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 764 279 262 0 0 chr1 23568177 23568257 -173627175 + L1M2 LINE L1 2469 2548 -4301 1 764 14430 90 220 5 chr1 23568356 23572106 -173623326 + L1Md_F2 LINE L1 536 5585 -298 1 764 7195 72 17 16 chr1 23572107 23573103 -173622329 + L1Md_F2 LINE L1 5587 6582 0 1 764 1475 296 94 58 chr1 23573156 23573874 -173621558 + L1MA4 LINE L1 3183 3958 -2182 1 764 548 281 15 87 chr1 23573874 23574069 -173621363 + B3A SINE B2 1 181 -17 1 764 1475 296 94 58 chr1 23574069 23574741 -173620691 + L1MA4 LINE L1 3959 4623 -1517 1 764 294 386 9 9 chr1 23574749 23574864 -173620568 + ID_B1 SINE B4 62 176 -48 1 764 351 287 53 11 chr1 23574779 23574874 -173620558 + PB1D10 SINE Alu 10 108 -9 1 764 306 318 103 32 chr1 23574874 23575030 -173620402 + L1MA4 LINE L1 4637 4803 -1340 1 764 303 352 82 0 chr1 23575047 23575169 -173620263 + L1MA4 LINE L1 4840 4971 -1172 1 764 565 305 117 32 chr1 23575202 23575832 -173619600 + L1MA4 LINE L1 5077 5787 -513 1 764 444 19 0 0 chr1 23575832 23575885 -173619547 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 764 564 325 124 26 chr1 23575885 23576109 -173619323 + L1MA4 LINE L1 5788 6021 -279 1 764 998 95 7 39 chr1 23577371 23577524 -173617908 + B1_Mus1 SINE Alu 1 148 0 1 764 249 57 0 0 chr1 23577531 23577566 -173617866 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 764 378 186 158 24 chr1 23577973 23578100 -173617332 - Lx5 LINE L1 -3 7047 6904 1 764 266 292 96 17 chr1 23579684 23579799 -173615633 + Arthur1 DNA Tip100 176 299 -3648 1 764 1215 54 0 0 chr1 23579812 23579959 -173615473 + B1_Mus1 SINE Alu 2 148 0 1 764 548 102 23 0 chr1 23579962 23580050 -173615382 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1 764 458 220 104 52 chr1 23580205 23580320 -173615112 + RSINE1 SINE B4 29 149 -16 1 764 299 270 40 10 chr1 23580340 23580441 -173614991 + Arthur1 DNA Tip100 3438 3541 -406 1 764 331 325 44 25 chr1 23580893 23581051 -173614381 + Arthur1 DNA Tip100 3774 3934 -13 1 764 197 206 109 75 chr1 23581549 23581611 -173613821 - MIRc SINE MIR -192 84 19 1 764 388 201 0 20 chr1 23582359 23582511 -173612921 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 1 764 649 250 7 0 chr1 23583477 23583617 -173611815 - ID_B1 SINE B4 0 224 84 1 764 698 132 16 0 chr1 23583656 23583777 -173611655 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 1 764 986 203 50 20 chr1 23583914 23584115 -173611317 + B3 SINE B2 9 215 -1 1 764 13328 76 24 23 chr1 23584202 23586905 -173608527 - L1VL2 LINE L1 -635 2980 284 1 764 464 248 150 60 chr1 23587601 23587768 -173607664 - B3A SINE B2 -16 182 1 1 764 234 297 107 9 chr1 23587783 23587895 -173607537 + MER113 DNA MER1_type 45 167 -354 1 764 206 107 35 35 chr1 23588383 23588441 -173606991 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 764 1252 83 22 0 chr1 23588753 23588933 -173606499 - L1Md_F2 LINE L1 -12 6570 6387 1 764 1876 22 13 4 chr1 23588942 23589169 -173606263 + L1Md_F3 LINE L1 6353 6581 -3 1 764 22 70 0 0 chr1 23589173 23589216 -173606216 + AT_rich Low_complexity Low_complexity 1 43 0 1 764 587 254 75 14 chr1 23589322 23589467 -173605965 + MTD LTR MaLR 8 151 -268 1 764 241 268 111 44 chr1 23589486 23589576 -173605856 - MTD LTR MaLR -274 145 50 1 764 370 255 280 60 chr1 23589580 23589764 -173605668 + MTD LTR MaLR 161 391 -30 1 764 298 0 0 45 chr1 23589764 23589808 -173605624 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 764 370 155 24 134 chr1 23589808 23589836 -173605596 + MTD LTR MaLR 392 404 -17 1 764 949 280 71 93 chr1 23589866 23590276 -173605156 - MTD LTR MaLR -13 406 6 1 764 4007 174 71 66 chr1 23590574 23590897 -173604535 + RMER21A LTR ERV1 50 389 -558 1 764 2021 53 0 0 chr1 23590897 23591143 -173604289 + L1_Mus1 LINE L1 6317 6562 -5 1 764 4007 174 71 66 chr1 23591143 23591703 -173603729 + RMER21A LTR ERV1 390 938 -9 1 764 245 246 0 0 chr1 23592348 23592417 -173603015 + GA-rich Low_complexity Low_complexity 1 69 0 1 765 201 116 47 0 chr1 23593176 23593219 -173602213 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1 765 198 143 0 0 chr1 23593530 23593565 -173601867 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 765 188 86 29 0 chr1 23593810 23593845 -173601587 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 765 780 0 0 0 chr1 23593973 23594069 -173601363 - L1Md_A LINE L1 0 6582 6487 1 765 396 104 0 0 chr1 23594456 23594523 -173600909 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 1 765 288 0 0 0 chr1 23594545 23594577 -173600855 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1 765 264 91 0 0 chr1 23594795 23594839 -173600593 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 765 846 309 66 16 chr1 23594864 23595120 -173600312 - B4A SINE B4 -22 270 2 1 765 592 296 12 65 chr1 23597649 23597819 -173597613 + B3A SINE B2 29 189 -9 1 765 748 218 62 43 chr1 23597854 23598065 -173597367 + B3 SINE B2 1 215 -1 1 765 5876 94 27 1 chr1 23598143 23598983 -173596449 + Lx3B LINE L1 6106 6967 -6 1 765 389 70 18 0 chr1 23598996 23599053 -173596379 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1 765 243 0 0 0 chr1 23599061 23599088 -173596344 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1 765 22 35 0 0 chr1 23599088 23599117 -173596315 + AT_rich Low_complexity Low_complexity 1 29 0 1 765 569 293 20 55 chr1 23599514 23599713 -173595719 + B3A SINE B2 4 195 -3 1 765 187 217 20 61 chr1 23600136 23600185 -173595247 - MIRb SINE MIR -92 176 130 1 765 285 302 57 104 chr1 23601209 23601420 -173594012 - CYRA11_Mm Unknown Y-chromosome -199 418 218 1 765 926 188 59 0 chr1 23601258 23601444 -173593988 + URR1B DNA MER1_type 17 213 -12 1 765 339 341 86 6 chr1 23601604 23601778 -173593654 + MIR3 SINE MIR 9 196 -12 1 765 664 279 48 77 chr1 23601974 23602285 -173593147 + RLTR11A LTR ERVK 227 528 0 1 765 1489 189 227 3 chr1 23602306 23602650 -173592782 - MTC LTR MaLR 0 421 1 1 765 5760 108 32 39 chr1 23603591 23604592 -173590840 + Lx LINE L1 5699 6647 -7 1 765 427 306 7 65 chr1 23604652 23604806 -173590626 - RSINE1 SINE B4 -19 146 2 1 765 401 321 34 45 chr1 23605061 23605261 -173590171 - Lx8 LINE L1 -1559 5914 5716 1 765 4563 123 38 26 chr1 23605261 23606061 -173589371 + RMER17D2 LTR ERVK 1 809 0 1 765 401 321 34 45 chr1 23606061 23606124 -173589308 - Lx8 LINE L1 -1758 5715 5654 1 765 1144 291 71 9 chr1 23606137 23606460 -173588972 + MTEa LTR MaLR 33 375 -4 1 765 24 32 0 0 chr1 23606749 23606780 -173588652 + AT_rich Low_complexity Low_complexity 1 31 0 1 765 265 374 0 18 chr1 23606860 23606969 -173588463 - MER45A DNA Tip100 0 178 72 1 765 556 85 10 31 chr1 23607197 23607294 -173588138 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1 765 1236 293 64 13 chr1 23607451 23607828 -173587604 - MTD LTR MaLR -13 406 11 1 765 223 244 0 0 chr1 23607925 23607966 -173587466 + polypyrimidine Low_complexity Low_complexity 3 43 0 1 765 762 84 0 0 chr1 23607966 23608073 -173587359 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 765 829 134 246 0 chr1 23608081 23608268 -173587164 - RLTR9F LTR ERVK -182 233 1 1 765 1334 92 16 0 chr1 23608331 23608515 -173586917 + B2_Mm2 SINE B2 2 188 -7 1 765 1799 165 101 3 chr1 23608791 23609119 -173586313 + ORR1B2 LTR MaLR 1 360 -7 1 765 3060 268 110 29 chr1 23609248 23610518 -173584914 + Lx8 LINE L1 6098 7470 -3 1 765 807 158 430 0 chr1 23613140 23613298 -173582134 + URR1A DNA MER1_type 1 226 0 1 765 197 369 12 23 chr1 23613646 23613732 -173581700 - MIR SINE MIR -51 211 127 1 765 1002 264 117 79 chr1 23613736 23614078 -173581354 + ORR1E LTR MaLR 1 355 -4 1 765 2129 179 33 28 chr1 23614747 23615143 -173580289 - MTB_Mm LTR MaLR 0 407 10 1 765 555 287 149 0 chr1 23615149 23615417 -173580015 + Lx8 LINE L1 7164 7471 -2 1 765 432 0 0 0 chr1 23616179 23616227 -173579205 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 765 180 229 64 103 chr1 23616707 23616785 -173578647 - L2 LINE L2 -1398 2021 1947 1 765 1162 216 0 9 chr1 23616982 23617192 -173578240 - B3 SINE B2 -6 210 3 1 765 354 318 0 0 chr1 23617354 23617464 -173577968 + L1MEg LINE L1 494 603 -5481 1 765 234 226 18 36 chr1 23617553 23617608 -173577824 + B4A SINE B4 239 292 0 1 765 396 0 0 0 chr1 23617755 23617799 -173577633 + (TAA)n Simple_repeat Simple_repeat 3 46 0 1 765 1305 112 32 5 chr1 23617821 23618010 -173577422 + B2_Mm2 SINE B2 1 194 -1 1 765 1984 316 122 6 chr1 23618202 23618471 -173576961 - Lx8 LINE L1 -213 7260 6953 1 765 360 0 0 0 chr1 23618471 23618511 -173576921 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 765 1984 316 122 6 chr1 23618511 23619190 -173576242 - Lx8 LINE L1 -521 6952 6204 1 765 249 108 0 0 chr1 23619208 23619245 -173576187 + (TCTCC)n Simple_repeat Simple_repeat 1 37 0 1 765 1294 167 58 29 chr1 23619245 23619347 -173576085 - L1_Mus3 LINE L1 -47 6591 6480 1 765 423 0 0 0 chr1 23619347 23619394 -173576038 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 765 255 31 0 0 chr1 23619394 23619425 -173576007 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 765 1294 167 58 29 chr1 23619425 23619630 -173575802 - L1_Mus3 LINE L1 -159 6479 6275 1 765 1893 129 40 64 chr1 23619630 23620207 -173575225 + RLTR1B LTR ERV1 1 624 0 2 765 2067 107 0 0 chr1 23620207 23620496 -173574936 - L1_Mus3 LINE L1 -361 6277 5989 2 765 5349 51 1 6 chr1 23620505 23621178 -173574254 + RLTR13C2 LTR ERVK 1 670 -138 2 765 36804 32 3 10 chr1 23621179 23626350 -173569082 + L1Md_A LINE L1 422 5555 -328 2 765 376 276 121 32 chr1 23626350 23626381 -173569051 + RLTR13C2 LTR ERVK 788 816 -142 2 765 8955 35 0 0 chr1 23626381 23627377 -173568055 + L1Md_T LINE L1 5587 6582 0 2 765 749 88 192 0 chr1 23627377 23627502 -173567930 + RLTR13C2 LTR ERVK 660 808 0 2 765 562 31 0 0 chr1 23627502 23627567 -173567865 - L1_Mus3 LINE L1 -722 5916 5852 2 765 3684 68 58 4 chr1 23627563 23628067 -173567365 + L1_Mus2 LINE L1 5830 6360 -206 2 765 4076 84 27 22 chr1 23628053 23628440 -173566992 - L1VL1 LINE L1 -2076 1622 1246 2 765 3551 43 2 0 chr1 23628440 23628835 -173566597 + MTA_Mm LTR MaLR 1 396 0 2 765 4076 151 136 26 chr1 23628835 23629746 -173565686 - L1VL1 LINE L1 -2453 1245 191 2 765 3256 248 41 20 chr1 23629796 23630817 -173564615 - Lx7 LINE L1 -1715 5981 4939 2 765 1110 266 14 0 chr1 23630811 23631097 -173564335 + Lx7 LINE L1 4673 4962 -918 2 765 290 317 68 39 chr1 23631432 23631770 -173563662 + L1MEg LINE L1 667 1014 -5070 2 765 434 309 9 9 chr1 23631794 23631902 -173563530 + RSINE1 SINE B4 41 148 -17 2 765 1782 155 26 32 chr1 23631944 23632234 -173563198 - Lx4B LINE L1 0 7058 6769 2 765 3895 79 88 15 chr1 23632234 23632760 -173562672 + LTRIS2 LTR ERV1 1 564 0 2 765 1782 191 124 23 chr1 23632760 23632903 -173562529 - Lx4B LINE L1 -290 6768 6550 2 765 586 223 127 26 chr1 23632956 23633145 -173562287 + Lx9 LINE L1 7427 7634 -10 2 765 550 300 20 12 chr1 23633271 23633517 -173561915 + L1MEg LINE L1 1203 1450 -4634 2 765 538 84 36 0 chr1 23635286 23635369 -173560063 + L1_Mus3 LINE L1 6546 6631 -7 2 765 212 311 73 5 chr1 23635515 23635665 -173559767 - MIR SINE MIR -1 261 35 2 765 236 207 61 26 chr1 23636882 23636996 -173558436 - RMER17D LTR ERVK -383 506 389 2 765 1287 113 11 11 chr1 23637012 23637199 -173558233 + B2_Mm2 SINE B2 2 188 -7 2 765 377 238 128 40 chr1 23637503 23637652 -173557780 - Lx8 LINE L1 -7 7466 7305 2 765 983 328 55 9 chr1 23637664 23638083 -173557349 - Lx8 LINE L1 -101 7372 6935 2 765 216 163 0 0 chr1 23639260 23639303 -173556129 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2 765 2154 217 63 10 chr1 23639411 23639899 -173555533 - Lx7 LINE L1 -383 7313 6800 2 765 952 228 45 0 chr1 23640209 23640411 -173555021 - B3 SINE B2 -5 211 1 2 765 3624 209 54 37 chr1 23640630 23641290 -173554142 + Lx9 LINE L1 6670 7328 -316 2 765 2874 159 47 23 chr1 23641290 23641805 -173553627 + RLTR11A2 LTR ERVK 1 527 0 2 765 3624 209 54 37 chr1 23641805 23642087 -173553345 + Lx9 LINE L1 7329 7628 -16 2 765 2184 191 113 47 chr1 23642560 23643089 -173552343 - RMER19B LTR ERVK 0 902 339 2 765 3880 96 46 2 chr1 23644393 23644959 -173550473 + L1_Mus3 LINE L1 6081 6638 0 2 765 420 311 13 38 chr1 23645516 23645673 -173549759 - MER44D DNA MER2_type -10 695 543 2 765 379 261 51 51 chr1 23645690 23645807 -173549625 - MER44D DNA MER2_type -584 121 5 2 765 207 271 21 0 chr1 23646106 23646154 -173549278 - L2a LINE L2 -10 3416 3368 2 765 423 0 0 0 chr1 23646754 23646801 -173548631 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 765 548 320 18 22 chr1 23647039 23647263 -173548169 + L1M2 LINE L1 5474 5696 -595 2 765 435 324 104 0 chr1 23647299 23647472 -173547960 - MER2 DNA MER2_type -41 304 114 2 765 1218 90 0 0 chr1 23647489 23647667 -173547765 + (GGA)n Simple_repeat Simple_repeat 3 180 0 2 765 388 262 47 16 chr1 23647717 23647845 -173547587 - Lx7 LINE L1 0 7696 7565 2 765 1259 61 0 0 chr1 23648445 23648592 -173546840 - B1_Mm SINE Alu 0 147 1 2 765 1938 134 78 15 chr1 23649061 23649394 -173546038 - ORR1B1 LTR MaLR 0 394 41 2 765 405 255 30 20 chr1 23649404 23649504 -173545928 + B1F SINE Alu 49 149 0 2 765 443 309 100 60 chr1 23649523 23649723 -173545709 + B4A SINE B4 85 292 0 2 765 388 194 82 30 chr1 23649732 23649925 -173545507 + L1M5 LINE L1 5217 5402 -2480 2 765 299 311 66 25 chr1 23650063 23650185 -173545247 + MER34A LTR ERV1 12 138 -433 2 765 762 245 9 84 chr1 23650368 23650582 -173544850 - B3A SINE B2 0 198 1 2 765 252 305 0 40 chr1 23650587 23650686 -173544746 + MER34A LTR ERV1 388 482 -60 2 765 672 295 48 76 chr1 23650691 23650950 -173544482 - MTEb LTR MaLR -9 370 132 2 765 268 192 19 19 chr1 23651112 23651165 -173544267 + RMER15 LTR ERVL 1 53 -522 2 765 446 302 24 41 chr1 23651241 23651410 -173544022 + RMER15 LTR ERVL 61 226 -349 2 765 937 108 0 0 chr1 23651631 23651761 -173543671 + B2_Mm2 SINE B2 3 132 -63 2 765 327 49 0 0 chr1 23651774 23651815 -173543617 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 765 773 231 112 9 chr1 23652135 23652349 -173543083 + RMER15 LTR ERVL 325 560 -15 2 765 8725 66 8 9 chr1 23652430 23654238 -173541194 - L1Md_F2 LINE L1 0 6582 4778 2 765 240 390 37 14 chr1 23654433 23654649 -173540783 + MIR SINE MIR 28 248 -14 2 765 1315 201 189 12 chr1 23654769 23655112 -173540320 - MTD LTR MaLR -15 404 1 2 765 486 0 0 0 chr1 23659798 23659852 -173535580 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 765 296 270 191 28 chr1 23659921 23660062 -173535370 - RSINE1 SINE B4 0 165 2 2 765 563 164 41 0 chr1 23661261 23661432 -173534000 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 765 480 187 18 27 chr1 23661448 23661894 -173533538 + (CA)n Simple_repeat Simple_repeat 1 441 0 2 765 264 293 32 40 chr1 23662218 23662330 -173533102 + MLT1E1A LTR MaLR 495 591 -89 2 765 615 285 89 81 chr1 23662632 23662979 -173532453 - ORR1E LTR MaLR -6 353 4 2 765 21 0 0 0 chr1 23663510 23663531 -173531901 + AT_rich Low_complexity Low_complexity 1 21 0 2 765 302 330 45 9 chr1 23664500 23664610 -173530822 + MER2 DNA MER2_type 232 345 0 2 765 856 268 131 82 chr1 23664614 23665103 -173530329 - MLT1E1 LTR MaLR -81 573 1 2 765 432 306 192 11 chr1 23665658 23665945 -173529487 - MLT1A0 LTR MaLR -12 353 15 2 765 1680 216 41 25 chr1 23666062 23666428 -173529004 + ORR1D1 LTR MaLR 3 374 0 2 765 206 216 78 0 chr1 23667950 23668001 -173527431 + L3 LINE CR1 3353 3407 -1082 2 765 276 85 85 0 chr1 23668524 23668571 -173526861 - ORR1D1 LTR MaLR 0 374 324 2 765 2812 17 20 0 chr1 23668567 23668922 -173526510 - MT2_Mm LTR ERVL -131 362 1 2 765 741 265 76 62 chr1 23668922 23669212 -173526220 - ORR1D1 LTR MaLR -80 294 1 2 765 379 298 52 0 chr1 23669396 23669590 -173525842 - L1MA5A LINE L1 -275 6025 5819 2 765 534 16 0 0 chr1 23669623 23669686 -173525746 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 765 266 268 112 44 chr1 23669752 23669912 -173525520 - L1M2 LINE L1 -430 5861 5691 2 765 37777 25 3 7 chr1 23669974 23675209 -173520223 + L1Md_A LINE L1 381 5586 -297 2 765 8677 30 0 0 chr1 23675209 23676204 -173519228 + L1Md_A LINE L1 5587 6581 -1 2 765 1511 238 14 14 chr1 23676204 23676222 -173519210 + L1M1 LINE L1 5616 5638 -662 2 765 1071 276 104 42 chr1 23676222 23676577 -173518855 + MTE2b LTR MaLR 1 377 -2 2 765 1511 238 14 14 chr1 23676577 23676613 -173518819 + L1M1 LINE L1 5639 5671 -629 2 765 2096 77 27 3 chr1 23676666 23676967 -173518465 - IAPLTR2b LTR ERVK -19 308 1 2 765 184 289 0 0 chr1 23677077 23677129 -173518303 + L2a LINE L2 3375 3426 0 2 765 446 276 49 7 chr1 23678135 23678277 -173517155 - B1_Mur1 SINE Alu -1 148 1 2 765 192 77 0 0 chr1 23678297 23678323 -173517109 + (CTTA)n Simple_repeat Simple_repeat 1 26 0 2 765 438 187 75 0 chr1 23678328 23678436 -173516996 - B1_Mm SINE Alu 0 120 1 2 765 1577 142 8 0 chr1 23678460 23678727 -173516705 - Lx2 LINE L1 0 6997 6729 2 765 606 259 0 53 chr1 23678732 23678883 -173516549 + RSINE1 SINE B4 4 146 -19 2 765 593 61 12 0 chr1 23678956 23679038 -173516394 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 765 197 309 117 6 chr1 23679528 23679691 -173515741 + MIRc SINE MIR 21 201 -67 2 765 22 35 0 0 chr1 23679736 23679765 -173515667 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 591 251 13 7 chr1 23679791 23679928 -173515504 - B3A SINE B2 -57 136 1 2 765 3270 214 202 23 chr1 23680955 23681857 -173513575 + RMER1B Other Other 1 1063 -3 2 765 233 271 187 0 chr1 23682073 23682180 -173513252 - MIR SINE MIR -127 135 9 2 765 259 318 11 11 chr1 23682866 23682955 -173512477 + L1M7 LINE L1 20 108 -6110 2 765 32 26 0 0 chr1 23684616 23684655 -173510777 + AT_rich Low_complexity Low_complexity 1 39 0 2 765 1218 126 62 44 chr1 23684658 23684772 -173510660 - Lx3A LINE L1 0 6981 6864 2 765 297 0 0 0 chr1 23684772 23684805 -173510627 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 2 765 1218 126 62 44 chr1 23684805 23684915 -173510517 - Lx3A LINE L1 -118 6863 6754 2 765 6495 64 6 6 chr1 23684939 23685756 -173509676 - L1_Mus1 LINE L1 0 6567 5751 2 765 9491 111 3 8 chr1 23685756 23687186 -173508246 + L1_Mm LINE L1 2740 4162 -1721 2 765 469 250 58 0 chr1 23687196 23687300 -173508132 + B3A SINE B2 51 160 -38 2 765 459 0 0 0 chr1 23687309 23687360 -173508072 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 765 468 0 0 0 chr1 23687360 23687411 -173508021 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 765 258 219 108 14 chr1 23687747 23687821 -173507611 + BC1_Mm scRNA scRNA 1 81 -71 2 765 702 246 69 0 chr1 23687758 23687933 -173507499 + ID_B1 SINE B4 14 200 -24 2 765 410 154 13 0 chr1 23687954 23688032 -173507400 + GA-rich Low_complexity Low_complexity 1 79 0 2 765 1257 34 0 0 chr1 23688808 23688955 -173506477 - B1_Mm SINE Alu 0 147 1 2 765 1516 52 10 5 chr1 23688956 23689148 -173506284 - B2_Mm2 SINE B2 0 195 3 2 765 926 168 0 11 chr1 23689403 23689584 -173505848 + GA-rich Low_complexity Low_complexity 2 180 0 2 765 1892 205 90 14 chr1 23690485 23690906 -173504526 - Lx9 LINE L1 -301 7343 6891 2 765 1089 54 0 7 chr1 23690947 23691096 -173504336 + B2_Mm2 SINE B2 1 148 -47 2 765 365 103 0 14 chr1 23691096 23691165 -173504267 + (CATA)n Simple_repeat Simple_repeat 3 70 0 3 765 596 173 196 0 chr1 23691171 23691344 -173504088 + Lx9 LINE L1 7433 7639 -5 3 765 215 317 9 9 chr1 23691689 23691794 -173503638 + T-rich Low_complexity Low_complexity 2 106 0 3 765 565 304 0 7 chr1 23691809 23691948 -173503484 + RSINE1 SINE B4 2 139 -26 3 765 679 231 28 44 chr1 23692628 23692807 -173502625 - B3A SINE B2 -2 196 21 3 765 1232 186 183 64 chr1 23692807 23693168 -173502264 - MTC LTR MaLR 0 421 18 3 765 31 26 0 0 chr1 23694166 23694204 -173501228 + AT_rich Low_complexity Low_complexity 1 38 0 3 765 1998 62 22 11 chr1 23694220 23694497 -173500935 - Lx3_Mus LINE L1 -15 6994 6715 3 765 294 268 36 12 chr1 23694833 23694916 -173500516 - MER45B DNA Tip100 0 1040 956 3 765 1028 326 36 5 chr1 23695022 23695411 -173500021 - MER45B DNA Tip100 -297 743 343 3 765 757 129 44 9 chr1 23695464 23695784 -173499648 + (TAGA)n Simple_repeat Simple_repeat 1 330 0 3 765 207 0 0 0 chr1 23695856 23695879 -173499553 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 765 665 314 53 19 chr1 23695922 23696185 -173499247 - MER45B DNA Tip100 -768 272 1 3 765 722 217 138 31 chr1 23698056 23698251 -173497181 - B3 SINE B2 0 216 1 3 765 2235 280 120 16 chr1 23698959 23699741 -173495691 + Lx8 LINE L1 6465 7327 -146 3 765 1474 184 132 0 chr1 23699755 23700081 -173495351 + MTC LTR MaLR 53 421 0 3 765 29671 80 16 104 chr1 23700269 23704345 -173491087 + L1Md_F LINE L1 415 4505 -1378 3 765 2805 130 2 72 chr1 23704345 23704869 -173490563 - RLTR1C LTR ERV1 -16 487 1 3 765 29671 80 16 104 chr1 23704869 23705945 -173489487 + L1Md_F LINE L1 4506 5586 -297 3 765 7530 75 5 2 chr1 23705945 23706928 -173488504 + L1Md_F2 LINE L1 5587 6572 -10 3 765 29671 72 7 116 chr1 23706928 23706944 -173488488 + L1Md_F LINE L1 5587 5606 -277 3 765 284 292 0 102 chr1 23706976 23707094 -173488338 + PB1D9 SINE Alu 3 108 -12 3 765 248 304 0 37 chr1 23707340 23707422 -173488010 + MTE2a LTR MaLR 1 79 -300 3 765 506 308 192 14 chr1 23707422 23707860 -173487572 + Lx9 LINE L1 7105 7620 -24 3 765 543 318 55 92 chr1 23707930 23708256 -173487176 + MTE2a LTR MaLR 66 379 0 3 765 2528 43 0 3 chr1 23708328 23708656 -173486776 - ORR1A0 LTR MaLR 0 346 20 3 765 2292 156 10 10 chr1 23709151 23709545 -173485887 + ORR1B1 LTR MaLR 1 394 0 3 765 716 256 13 82 chr1 23710483 23710755 -173484677 + Lx7 LINE L1 5635 5851 -1845 3 765 1674 161 137 16 chr1 23710755 23711121 -173484311 - MTC LTR MaLR -6 415 6 3 765 556 195 0 11 chr1 23713802 23713978 -173481454 + (TG)n Simple_repeat Simple_repeat 2 175 0 3 765 262 272 6 6 chr1 23714039 23714213 -173481219 + (TG)n Simple_repeat Simple_repeat 2 175 0 3 765 471 260 0 0 chr1 23714290 23714467 -173480965 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 765 294 302 25 8 chr1 23714488 23714608 -173480824 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 765 308 329 75 41 chr1 23714903 23715169 -173480263 + L1M2a LINE L1 7 281 -6887 3 765 884 235 202 8 chr1 23715175 23715658 -173479774 + RCHARR1 DNA MER1_type 6 582 -392 3 765 763 211 112 87 chr1 23715664 23715934 -173479498 - RMER16 LTR ERVK 0 533 273 3 765 4429 43 0 8 chr1 23715934 23716467 -173478965 - L1Md_F2 LINE L1 0 6582 6054 3 765 763 211 112 87 chr1 23716467 23716508 -173478924 - RMER16 LTR ERVK -261 272 216 3 765 1374 17 17 0 chr1 23716917 23717094 -173478338 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 765 602 105 9 0 chr1 23717094 23717207 -173478225 + (CATA)n Simple_repeat Simple_repeat 2 116 0 3 765 1204 114 17 0 chr1 23717213 23717388 -173478044 + B2_Mm1t SINE B2 2 179 -14 3 765 276 109 350 39 chr1 23717435 23717538 -173477894 + B2_Mm2 SINE B2 47 181 -14 3 765 249 342 124 11 chr1 23717988 23718174 -173477258 + L1M2a LINE L1 1082 1288 -5880 3 765 1214 322 82 9 chr1 23718192 23719028 -173476404 + L1M2a LINE L1 1379 2308 -4860 3 765 1048 65 23 12 chr1 23719142 23719314 -173476118 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 3 765 645 293 32 63 chr1 23719862 23720199 -173475233 + L1M2a LINE L1 2298 2629 -4539 3 765 734 254 35 25 chr1 23720199 23720397 -173475035 + B3 SINE B2 3 202 -14 3 765 421 330 82 56 chr1 23720397 23720623 -173474809 + L1M2a LINE L1 2630 2870 -4298 3 765 1224 78 71 16 chr1 23720639 23720821 -173474611 + B2_Mm2 SINE B2 4 195 0 3 765 339 25 0 0 chr1 23720821 23720861 -173474571 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 765 924 98 0 0 chr1 23720861 23720994 -173474438 + (GGAA)n Simple_repeat Simple_repeat 4 136 0 3 765 1093 295 74 62 chr1 23721430 23722258 -173473174 + L1M2a LINE L1 3131 3960 -3201 3 765 425 128 0 25 chr1 23722351 23722431 -173473001 + GA-rich Low_complexity Low_complexity 2 79 0 3 765 370 267 146 16 chr1 23722479 23722867 -173472565 + L1M2a LINE L1 4080 4511 -2650 3 765 255 321 42 63 chr1 23723113 23723256 -173472176 + B4A SINE B4 68 207 -85 3 765 22 0 0 0 chr1 23723279 23723301 -173472131 + AT_rich Low_complexity Low_complexity 1 22 0 3 766 3240 56 10 0 chr1 23724106 23724501 -173470931 + MTB LTR MaLR 1 399 -1 3 766 922 265 30 63 chr1 23724842 23725144 -173470288 - B4A SINE B4 0 292 1 3 766 429 227 17 43 chr1 23725168 23725283 -173470149 - PB1D10 SINE Alu -1 116 5 3 766 252 0 0 0 chr1 23725297 23725325 -173470107 + (A)n Simple_repeat Simple_repeat 1 28 0 3 766 680 230 30 24 chr1 23725338 23725503 -173469929 - B3A SINE B2 -32 166 1 3 766 30 27 0 0 chr1 23726700 23726737 -173468695 + AT_rich Low_complexity Low_complexity 1 37 0 3 766 656 218 114 45 chr1 23726740 23726942 -173468490 - B3 SINE B2 0 216 1 3 766 1291 242 41 27 chr1 23727191 23727556 -173467876 + ORR1D2 LTR MaLR 1 370 0 3 766 325 244 27 17 chr1 23727922 23728040 -173467392 + B4A SINE B4 106 225 -67 3 766 597 195 80 68 chr1 23728053 23728229 -173467203 + B3A SINE B2 4 181 -17 3 766 635 189 0 11 chr1 23728313 23728495 -173466937 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 766 666 196 0 0 chr1 23728537 23728988 -173466444 + (CA)n Simple_repeat Simple_repeat 1 451 0 3 766 876 248 104 69 chr1 23729876 23730223 -173465209 + MTE2b LTR MaLR 1 359 -20 3 766 306 0 0 0 chr1 23730543 23730577 -173464855 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 766 450 53 0 0 chr1 23730941 23730998 -173464434 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 766 37021 45 1 18 chr1 23731082 23736284 -173459148 + L1Md_A LINE L1 478 5585 -298 3 766 7974 33 52 0 chr1 23736285 23737232 -173458200 + L1Md_A LINE L1 5587 6582 0 3 766 396 190 0 0 chr1 23737501 23737580 -173457852 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 766 587 266 108 0 chr1 23738472 23738630 -173456802 + B3A SINE B2 3 177 -21 3 766 474 18 0 0 chr1 23738630 23738685 -173456747 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 3 766 1119 212 49 46 chr1 23739233 23739539 -173455893 + RLTR18B LTR ERVK 1 307 -205 3 766 1054 177 16 0 chr1 23739573 23739765 -173455667 + RLTR18B LTR ERVK 300 494 -18 3 766 683 107 137 16 chr1 23740366 23740443 -173454989 + Lx5 LINE L1 5739 5832 -1218 3 766 4376 105 28 19 chr1 23740443 23741092 -173454340 + Lx2 LINE L1 6331 6985 -12 3 766 813 73 0 0 chr1 23741093 23741202 -173454230 + (GGAAA)n Simple_repeat Simple_repeat 3 111 0 3 766 683 107 137 16 chr1 23741202 23741246 -173454186 + Lx5 LINE L1 5833 5876 -1174 3 766 30765 99 19 6 chr1 23741248 23746513 -173448919 + L1VL1 LINE L1 421 5751 -132 3 766 2901 128 9 4 chr1 23746514 23747018 -173448414 + RLTR1C LTR ERV1 1 605 0 3 766 6219 59 31 11 chr1 23747019 23747820 -173447612 + L1_Mus2 LINE L1 5750 6566 0 3 766 5172 227 34 26 chr1 23747850 23749015 -173446417 + Lx5 LINE L1 5862 7036 -14 3 766 412 267 76 56 chr1 23749042 23749240 -173446192 + B4 SINE B4 50 251 -41 3 766 192 251 107 12 chr1 23749367 23749469 -173445963 + MIR SINE MIR 42 157 -119 3 766 814 257 36 4 chr1 23750034 23750284 -173445148 + MER31A LTR ERV1 22 279 -206 3 766 572 230 59 0 chr1 23750296 23750431 -173445001 - MTD LTR MaLR -14 405 263 3 766 441 180 8 24 chr1 23750436 23750561 -173444871 + CT-rich Low_complexity Low_complexity 6 128 0 3 766 468 0 0 0 chr1 23750562 23750614 -173444818 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 766 474 257 93 22 chr1 23750616 23750755 -173444677 - B1_Mur1 SINE Alu 0 149 1 3 766 609 201 194 6 chr1 23750777 23750942 -173444490 - MTD LTR MaLR -179 240 45 3 766 351 227 55 0 chr1 23750963 23751073 -173444359 + MER31A LTR ERV1 264 379 -106 3 766 277 296 0 53 chr1 23751148 23751223 -173444209 - ID4_ SINE ID -8 75 5 3 766 468 324 111 63 chr1 23751585 23751901 -173443531 - MLT1A1 LTR MaLR -77 331 1 3 766 369 193 139 25 chr1 23753106 23753202 -173442230 + B4 SINE B4 21 130 -162 3 766 1024 105 0 0 chr1 23753202 23753354 -173442078 + B2_Mm2 SINE B2 2 153 -42 3 766 277 320 26 0 chr1 23753461 23753539 -173441893 + RSINE1 SINE B4 85 164 -1 3 766 701 201 3 3 chr1 23753541 23753908 -173441524 + (CA)n Simple_repeat Simple_repeat 1 367 0 3 766 363 275 56 14 chr1 23754403 23754547 -173440885 + MLT1G3 LTR MaLR 423 572 -23 3 766 24 32 0 0 chr1 23754950 23754981 -173440451 + AT_rich Low_complexity Low_complexity 1 31 0 3 766 498 262 25 101 chr1 23754986 23755067 -173440365 + ID SINE ID 1 78 -146 3 766 561 55 0 0 chr1 23755067 23755140 -173440292 + (CTAAA)n Simple_repeat Simple_repeat 3 75 0 3 766 498 262 25 101 chr1 23755140 23755161 -173440271 + ID_B1 SINE B4 79 219 -4 3 766 669 216 8 0 chr1 23755161 23755295 -173440137 + B1_Mur1 SINE Alu 10 144 -5 3 766 203 247 14 0 chr1 23755556 23755629 -173439803 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 766 378 0 0 0 chr1 23756203 23756245 -173439187 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 766 848 28 9 0 chr1 23756245 23756352 -173439080 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 766 498 280 119 16 chr1 23756359 23756544 -173438888 - Lx9 LINE L1 -215 7429 7226 3 766 342 67 0 62 chr1 23756749 23756797 -173438635 - Lx3B LINE L1 -155 6818 6774 3 766 232 366 16 8 chr1 23756797 23756814 -173438618 - MLT2B3 LTR ERVL -429 125 100 3 766 235 191 85 0 chr1 23756814 23756861 -173438571 - MTEb LTR MaLR -277 102 52 3 766 232 366 16 8 chr1 23756861 23756921 -173438511 - MLT2B3 LTR ERVL -429 99 1 3 766 347 0 23 0 chr1 23758499 23758542 -173436890 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 766 1574 163 35 102 chr1 23758586 23759009 -173436423 + Lx9 LINE L1 7242 7636 -8 3 766 438 250 148 0 chr1 23759033 23759161 -173436271 + B1_Mur1 SINE Alu 1 147 -2 3 766 25 0 0 0 chr1 23759507 23759532 -173435900 + AT_rich Low_complexity Low_complexity 1 25 0 3 766 4078 61 0 0 chr1 23759534 23760028 -173435404 - L1_Mus1 LINE L1 0 6567 6074 3 766 397 234 10 21 chr1 23760168 23760264 -173435168 - B4A SINE B4 -194 98 4 3 766 1140 172 0 28 chr1 23760775 23760990 -173434442 - URR1B DNA MER1_type -12 213 5 3 766 864 259 121 39 chr1 23761003 23761341 -173434091 - MTEa LTR MaLR -12 367 2 3 766 1376 86 16 16 chr1 23761615 23761805 -173433627 + B2_Mm2 SINE B2 1 190 -5 4 766 694 257 75 49 chr1 23762126 23762392 -173433040 + Lx8 LINE L1 7195 7467 -6 4 766 188 333 0 0 chr1 23762655 23762712 -173432720 - MIRc SINE MIR -44 224 168 4 766 772 240 25 54 chr1 23762949 23763152 -173432280 + B3A SINE B2 2 198 0 4 766 712 291 24 14 chr1 23763253 23763466 -173431966 + B3 SINE B2 2 216 0 4 766 983 117 49 27 chr1 23764562 23764746 -173430686 - B2_Mm2 SINE B2 -6 189 2 4 766 2149 114 38 9 chr1 23764801 23765121 -173430311 - ORR1A4 LTR MaLR 0 329 1 4 766 337 200 46 23 chr1 23765528 23765615 -173429817 - MIR SINE MIR -66 196 108 4 766 520 199 194 16 chr1 23765718 23765969 -173429463 - ORR1D2 LTR MaLR 0 370 64 4 766 1603 215 96 10 chr1 23766154 23766540 -173428892 + MTC LTR MaLR 3 421 0 4 766 1864 152 11 157 chr1 23767133 23767578 -173427854 + RLTR14 LTR ERV1 3 382 0 4 766 190 356 58 0 chr1 23767962 23768153 -173427279 + MIRc SINE MIR 13 214 -54 4 766 387 0 0 0 chr1 23768561 23768604 -173426828 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 766 629 165 8 0 chr1 23770901 23771022 -173424410 + CT-rich Low_complexity Low_complexity 1 122 0 4 766 207 0 0 0 chr1 23771363 23771386 -173424046 + (A)n Simple_repeat Simple_repeat 1 23 0 4 766 1050 143 0 0 chr1 23773413 23773588 -173421844 + (GAA)n Simple_repeat Simple_repeat 1 175 0 4 766 579 29 0 0 chr1 23774973 23775042 -173420390 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 766 234 0 0 0 chr1 23775042 23775067 -173420365 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 766 1395 170 5 0 chr1 23775104 23775328 -173420104 - URR1B DNA MER1_type 0 225 1 4 766 938 165 35 12 chr1 23775354 23775526 -173419906 + Lx9 LINE L1 7035 7210 -434 4 766 390 325 16 8 chr1 23775526 23775647 -173419785 - RSINE1 SINE B4 -42 123 2 4 766 1209 64 0 28 chr1 23776184 23776360 -173419072 - B2_Mm2 SINE B2 -23 172 2 4 766 661 206 143 61 chr1 23776763 23776959 -173418473 + B4 SINE B4 2 213 -79 4 766 403 63 32 0 chr1 23777385 23777448 -173417984 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 766 272 27 27 0 chr1 23778885 23778922 -173416510 + (CATA)n Simple_repeat Simple_repeat 2 39 0 4 766 332 300 133 0 chr1 23779143 23779263 -173416169 + L2a LINE L2 3287 3422 -4 4 766 226 281 0 0 chr1 23779891 23779955 -173415477 - MTD LTR MaLR -20 399 336 4 766 1752 144 79 62 chr1 23779967 23780336 -173415096 + ORR1B1 LTR MaLR 20 394 0 4 766 727 180 0 0 chr1 23780343 23780471 -173414961 - MTD LTR MaLR -96 323 196 4 766 1099 61 5 38 chr1 23780488 23780674 -173414758 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 766 545 0 15 0 chr1 23780696 23780761 -173414671 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 766 935 185 45 0 chr1 23781177 23781377 -173414055 - MTD LTR MaLR -207 212 4 4 766 23 54 0 0 chr1 23782325 23782362 -173413070 + AT_rich Low_complexity Low_complexity 1 37 0 4 766 339 242 21 0 chr1 23782435 23782530 -173412902 - Charlie2b DNA MER1_type -911 1871 1775 4 766 295 279 46 62 chr1 23782534 23782664 -173412768 - Charlie2b DNA MER1_type -2460 322 195 4 766 2391 252 147 18 chr1 23784072 23784896 -173410536 + Lx8 LINE L1 6184 7113 -360 4 766 290 187 26 78 chr1 23785069 23785185 -173410247 + T-rich Low_complexity Low_complexity 3 112 0 4 766 366 23 0 0 chr1 23785214 23785257 -173410175 + (TGG)n Simple_repeat Simple_repeat 1 43 0 4 766 770 165 0 0 chr1 23785257 23785384 -173410048 - B1_Mus2 SINE Alu 0 147 21 4 766 11910 48 0 1 chr1 23785584 23787763 -173407669 - L1Md_F2 LINE L1 0 6582 4406 4 766 234 0 0 0 chr1 23788006 23788032 -173407400 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 4 766 3899 100 4 0 chr1 23788035 23788576 -173406856 - Lx2 LINE L1 0 6997 6455 4 766 2175 252 71 2 chr1 23788591 23789155 -173406277 - Lx9 LINE L1 -7 7637 7035 4 766 3270 47 3 0 chr1 23789161 23789545 -173405887 - IAPEY_LTR LTR ERVK 0 385 1 4 766 22361 46 3 6 chr1 23789547 23792264 -173403168 - IAPEy-int LTR ERVK -2 7511 4804 4 766 2932 132 11 21 chr1 23792264 23792943 -173402489 - IAPEy-int LTR ERVK -6455 1058 1 4 766 3292 44 3 0 chr1 23792943 23793327 -173402105 - IAPEY_LTR LTR ERVK 0 385 1 4 766 789 150 0 0 chr1 23793470 23793597 -173401835 - B1_Mur2 SINE Alu 0 149 23 4 766 227 261 53 9 chr1 23793611 23793719 -173401713 - L1M3 LINE L1 -711 5601 5487 4 766 374 295 84 37 chr1 23794058 23794357 -173401075 - L1M3 LINE L1 -1377 4763 4451 4 766 425 317 16 58 chr1 23794521 23794712 -173400720 + B3A SINE B2 1 183 -15 4 766 181 75 0 48 chr1 23795099 23795141 -173400291 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 4 766 2946 52 7 59 chr1 23795156 23795563 -173399869 - L1Md_F2 LINE L1 0 6582 6197 4 766 405 314 44 22 chr1 23795601 23795738 -173399694 + RSINE1 SINE B4 5 144 -21 4 766 285 98 0 0 chr1 23795753 23795794 -173399638 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 766 587 308 0 50 chr1 23795841 23796022 -173399410 + B4A SINE B4 103 274 -18 4 766 282 252 31 16 chr1 23796372 23796501 -173398931 + T-rich Low_complexity Low_complexity 2 132 0 4 766 209 108 0 26 chr1 23796504 23796542 -173398890 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 766 297 0 0 0 chr1 23796542 23796574 -173398858 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 766 257 260 70 64 chr1 23796800 23796956 -173398476 - L1MA4 LINE L1 -368 5932 5776 4 766 446 301 75 0 chr1 23797106 23797279 -173398153 - L1MA4 LINE L1 -492 5799 5614 4 766 653 281 88 0 chr1 23797547 23797796 -173397636 - L1MA4 LINE L1 -726 5571 5301 4 766 396 308 286 20 chr1 23797919 23798370 -173397062 - L1MA4 LINE L1 -2110 4033 3463 4 766 420 71 0 0 chr1 23798417 23798473 -173396959 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 766 2349 84 3 58 chr1 23798792 23799134 -173396298 - ORR1A2 LTR MaLR -2 325 3 4 766 229 248 8 71 chr1 23799300 23799426 -173396006 + A-rich Low_complexity Low_complexity 3 120 0 4 766 22 0 0 0 chr1 23799540 23799562 -173395870 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 482 224 41 41 chr1 23799840 23799961 -173395471 + MTEa LTR MaLR 14 134 -245 4 766 314 208 15 94 chr1 23799987 23800091 -173395341 + MTEa LTR MaLR 278 418 -1 4 766 207 0 0 0 chr1 23800990 23801013 -173394419 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 766 271 224 13 26 chr1 23801013 23801091 -173394341 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 766 631 300 121 44 chr1 23801333 23801814 -173393618 - L1M5 LINE L1 -3437 2709 2192 4 766 774 242 10 35 chr1 23802030 23802231 -173393201 - B3A SINE B2 0 198 3 4 766 840 58 67 10 chr1 23802695 23802994 -173392438 + (TC)n Simple_repeat Simple_repeat 1 316 0 4 766 268 313 217 8 chr1 23803936 23804171 -173391261 - MLT1L LTR MaLR -147 463 180 4 766 302 322 82 21 chr1 23805526 23805808 -173389624 - L1MC4 LINE L1 -1019 7023 6725 4 766 575 269 8 0 chr1 23805842 23805972 -173389460 + RSINE1 SINE B4 4 134 -31 4 766 434 132 0 13 chr1 23806277 23806354 -173389078 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 766 351 0 0 0 chr1 23806388 23806427 -173389005 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 766 468 0 0 0 chr1 23806427 23806478 -173388954 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 766 234 217 0 0 chr1 23806496 23806542 -173388890 - L1M5 LINE L1 -424 5740 5695 4 766 286 42 20 20 chr1 23806770 23806819 -173388613 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 4 766 217 296 9 109 chr1 23806827 23806849 -173388583 - PB1D10 SINE Alu -1 116 18 4 766 217 275 11 91 chr1 23806849 23806937 -173388495 - ID_B1 SINE B4 -45 179 99 4 766 270 109 43 0 chr1 23807262 23807308 -173388124 + URR1B DNA MER1_type 178 225 0 4 766 795 222 62 38 chr1 23807489 23807700 -173387732 + B3 SINE B2 1 216 0 4 766 1112 282 99 12 chr1 23807750 23808023 -173387409 - L1MA8 LINE L1 -53 6238 5939 4 766 342 0 0 0 chr1 23808023 23808061 -173387371 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 766 1112 282 99 12 chr1 23808061 23808293 -173387139 - L1MA8 LINE L1 -353 5938 5690 4 766 590 225 29 60 chr1 23808388 23808570 -173386862 - L1MA8 LINE L1 -479 5689 5512 4 766 272 321 112 21 chr1 23808579 23808767 -173386665 - L1M5 LINE L1 -1198 4948 4744 4 766 3303 39 37 0 chr1 23808907 23809313 -173386119 + L1Md_F3 LINE L1 6164 6584 0 4 766 463 250 102 37 chr1 23809559 23809775 -173385657 - L1MC3 LINE L1 -832 6953 6724 4 766 1246 302 128 23 chr1 23809785 23810533 -173384899 - L1MC3 LINE L1 -457 7328 6502 4 766 204 67 0 0 chr1 23811379 23811409 -173384023 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 766 198 0 0 0 chr1 23811406 23811428 -173384004 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 766 291 214 138 49 chr1 23811449 23811572 -173383860 + Lx7 LINE L1 7511 7644 -52 4 766 186 71 0 0 chr1 23811586 23811614 -173383818 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 766 7164 89 2 19 chr1 23811654 23811771 -173383661 + L1_Mus1 LINE L1 5702 5829 -350 4 766 1165 76 0 0 chr1 23811771 23811916 -173383516 + B1_Mus2 SINE Alu 1 145 -2 4 766 7164 54 0 9 chr1 23811916 23812693 -173382739 + L1_Mus1 LINE L1 5798 6567 0 4 766 281 75 94 0 chr1 23812702 23812755 -173382677 + Lx6 LINE L1 7398 7455 -5 4 766 405 0 0 0 chr1 23813784 23813829 -173381603 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 766 423 0 0 0 chr1 23813829 23813875 -173381557 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 766 397 261 61 8 chr1 23813878 23814009 -173381423 - RSINE1 SINE B4 -26 139 2 4 766 600 297 0 0 chr1 23814182 23814330 -173381102 + B3A SINE B2 1 148 -50 4 766 231 36 0 0 chr1 23814330 23814358 -173381074 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 766 1074 76 0 0 chr1 23814358 23814502 -173380930 + (GA)n Simple_repeat Simple_repeat 2 146 0 4 766 272 289 20 40 chr1 23814957 23815058 -173380374 + L1MD LINE L1 4787 4885 -1261 4 766 683 44 11 0 chr1 23815757 23815848 -173379584 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 4 766 249 33 0 0 chr1 23815875 23815905 -173379527 + (TATG)n Simple_repeat Simple_repeat 2 31 0 4 766 821 305 39 3 chr1 23815937 23816223 -173379209 - MTE2b LTR MaLR -6 373 78 4 766 1249 173 9 9 chr1 23816297 23816519 -173378913 - URR1A DNA MER1_type -4 222 1 4 766 677 281 106 47 chr1 23816768 23817224 -173378208 - L1MA6 LINE L1 -367 6626 6059 4 766 512 233 200 0 chr1 23817350 23817500 -173377932 - B3 SINE B2 -28 188 9 5 766 289 281 86 7 chr1 23817502 23817642 -173377790 - L1M2 LINE L1 -1358 4785 4635 5 766 198 0 0 0 chr1 23817676 23817698 -173377734 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 5 766 457 281 8 0 chr1 23817716 23817837 -173377595 - B1_Mur3 SINE Alu -27 122 1 5 766 797 294 83 34 chr1 23817845 23818376 -173377056 - L1MA6 LINE L1 -481 6101 5545 4 766 619 318 109 14 chr1 23818506 23818994 -173376438 - L1MA6 LINE L1 -1226 5619 5086 4 766 1481 121 143 13 chr1 23818996 23819321 -173376111 - ORR1A3 LTR MaLR 0 394 1 5 766 286 229 36 0 chr1 23819321 23819404 -173376028 - L1_Mur1 LINE L1 -1524 4362 4277 5 766 652 152 0 0 chr1 23819404 23819516 -173375916 + MTC LTR MaLR 1 112 -309 5 766 408 88 0 0 chr1 23819516 23819573 -173375859 + (TTA)n Simple_repeat Simple_repeat 2 58 0 5 766 873 211 80 9 chr1 23819573 23819859 -173375573 - BGLII_B LTR ERVK -114 331 1 5 766 739 270 86 90 chr1 23819863 23820164 -173375268 + ORR1E LTR MaLR 56 355 -4 5 766 317 252 132 86 chr1 23820345 23820588 -173374844 - L1MA6 LINE L1 -3626 3219 2966 4 766 210 71 0 0 chr1 23820628 23820656 -173374776 + (TGG)n Simple_repeat Simple_repeat 1 28 0 5 766 289 178 10 62 chr1 23820667 23820763 -173374669 + T-rich Low_complexity Low_complexity 4 94 0 5 766 447 264 132 62 chr1 23820986 23821292 -173374140 - L1MA6 LINE L1 -4608 2242 1922 4 766 502 178 28 0 chr1 23821299 23821406 -173374026 - B1_Mur1 SINE Alu 0 149 40 5 766 235 151 37 19 chr1 23821358 23821412 -173374020 - 4.5SRNA scRNA scRNA -10 84 30 5 766 708 89 0 0 chr1 23821634 23821735 -173373697 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 5 766 509 163 37 93 chr1 23821737 23821845 -173373587 - B1_Mur2 SINE Alu -13 107 6 5 766 6238 73 7 4 chr1 23823079 23824044 -173371388 - L1_Mus2 LINE L1 -564 6002 5037 5 766 4811 49 5 3 chr1 23824044 23824636 -173370796 + L1_Mus2 LINE L1 5974 6566 0 5 766 25 0 0 0 chr1 23824961 23824986 -173370446 + AT_rich Low_complexity Low_complexity 1 25 0 5 766 420 286 267 17 chr1 23825082 23825097 -173370335 - Lx9 LINE L1 -156 7488 7472 5 766 225 0 0 0 chr1 23825097 23825122 -173370310 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 766 420 286 267 17 chr1 23825122 23825451 -173369981 - Lx9 LINE L1 -173 7471 7059 5 766 7374 94 25 16 chr1 23826364 23826703 -173368729 + Lx LINE L1 5610 5945 -709 5 766 2986 32 3 0 chr1 23826703 23827048 -173368384 + ORR1A0 LTR MaLR 1 346 0 5 766 7374 94 25 16 chr1 23827048 23827740 -173367692 + Lx LINE L1 5946 6651 -3 5 766 615 103 0 0 chr1 23827862 23827959 -173367473 + (TGAA)n Simple_repeat Simple_repeat 2 98 0 5 766 329 174 14 0 chr1 23830144 23830213 -173365219 + CT-rich Low_complexity Low_complexity 3 72 0 5 766 479 336 0 0 chr1 23830217 23830345 -173365087 + ID_B1 SINE B4 86 213 -11 5 766 27 0 0 0 chr1 23830503 23830530 -173364902 + AT_rich Low_complexity Low_complexity 1 27 0 5 766 191 140 0 20 chr1 23834491 23834542 -173360890 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 766 502 277 159 4 chr1 23834937 23835060 -173360372 - L1MA5 LINE L1 -1 6299 6155 5 766 1326 234 37 66 chr1 23835060 23835439 -173359993 + ORR1D2 LTR MaLR 1 368 -2 5 766 502 277 159 4 chr1 23835439 23835572 -173359860 - L1MA5 LINE L1 -146 6154 6004 5 766 666 37 0 0 chr1 23835572 23835653 -173359779 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 766 1130 56 35 0 chr1 23835695 23835837 -173359595 - B1_Mm SINE Alu 0 147 1 5 766 634 264 115 95 chr1 23837173 23837563 -173357869 - RMER13A LTR ERVK -371 489 92 5 766 1882 142 60 31 chr1 23837716 23838065 -173357367 - ORR1B2 LTR MaLR -8 359 1 5 766 501 278 72 67 chr1 23838956 23839164 -173356268 - B3A SINE B2 -7 209 1 5 766 192 346 25 25 chr1 23840455 23840535 -173354897 + L2c LINE L2 3262 3341 -46 5 766 243 0 0 0 chr1 23841638 23841665 -173353767 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 766 571 268 119 44 chr1 23842181 23842552 -173352880 + L1M4 LINE L1 2808 3225 -2915 5 766 646 256 129 24 chr1 23842552 23842800 -173352632 + B4A SINE B4 1 274 -18 5 766 570 291 151 68 chr1 23842800 23842839 -173352593 + L1M4 LINE L1 3226 3285 -2855 5 766 342 0 0 0 chr1 23842839 23842877 -173352555 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 766 842 269 113 77 chr1 23842877 23843553 -173351879 + L1M4 LINE L1 3286 3985 -2155 5 766 717 193 50 29 chr1 23843685 23843824 -173351608 + B1_Mur2 SINE Alu 1 142 -7 5 766 260 313 45 94 chr1 23844060 23844261 -173351171 + L1M4 LINE L1 4577 4767 -1379 5 766 1327 112 12 122 chr1 23844269 23844523 -173350909 - URR1A DNA MER1_type 0 226 1 5 766 905 280 44 54 chr1 23844528 23844823 -173350609 + B4 SINE B4 1 292 0 5 766 186 189 0 0 chr1 23844837 23844874 -173350558 + (TATG)n Simple_repeat Simple_repeat 4 40 0 5 766 571 135 30 30 chr1 23845091 23845190 -173350242 + ORR1C1 LTR MaLR 1 99 -285 5 766 524 132 7 44 chr1 23845193 23845328 -173350104 + CT-rich Low_complexity Low_complexity 3 132 0 5 766 1132 153 9 63 chr1 23845340 23845563 -173349869 + ORR1C1 LTR MaLR 166 376 -2 5 766 919 190 119 32 chr1 23845884 23846069 -173349363 + B3 SINE B2 1 201 -15 5 766 251 341 42 12 chr1 23846827 23846993 -173348439 - L1MEc LINE L1 -2456 3863 3693 5 766 1268 191 196 10 chr1 23847207 23847508 -173347924 - ORR1D2 LTR MaLR 0 370 14 5 766 423 133 19 9 chr1 23847678 23847784 -173347648 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 766 379 43 0 0 chr1 23847809 23847855 -173347577 - HAL1-3A_ME LINE L1 -843 2015 1970 5 766 324 261 65 0 chr1 23848451 23848543 -173346889 - L1MEc LINE L1 -5639 761 664 5 766 812 277 16 5 chr1 23848999 23849184 -173346248 - B3 SINE B2 -23 193 7 5 766 286 333 0 0 chr1 23851076 23851148 -173344284 - ID2 SINE ID -2 81 10 5 766 336 24 0 0 chr1 23852260 23852301 -173343131 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 5 766 21 0 0 0 chr1 23854688 23854709 -173340723 + AT_rich Low_complexity Low_complexity 1 21 0 5 767 396 0 0 0 chr1 23856440 23856484 -173338948 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 767 1549 68 21 0 chr1 23857265 23857456 -173337976 + B2_Mm2 SINE B2 1 195 0 5 767 242 190 16 42 chr1 23858612 23858675 -173336757 + B3A SINE B2 1 55 -161 5 767 406 259 61 26 chr1 23858813 23858928 -173336504 + B3 SINE B2 28 146 -70 5 767 608 247 74 25 chr1 23859094 23859256 -173336176 - B4A SINE B4 -122 170 1 5 767 294 321 73 21 chr1 23860003 23860132 -173335300 - MER58B DNA MER1_type -50 291 159 5 767 29 0 0 0 chr1 23860448 23860477 -173334955 + AT_rich Low_complexity Low_complexity 1 29 0 5 767 22 0 0 0 chr1 23863000 23863022 -173332410 + AT_rich Low_complexity Low_complexity 1 22 0 5 767 276 30 0 0 chr1 23863144 23863177 -173332255 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 767 1758 26 0 15 chr1 23863474 23863670 -173331762 + B2_Mm1a SINE B2 1 193 0 5 767 427 204 86 29 chr1 23863760 23863923 -173331509 - B3A SINE B2 -12 183 2 5 767 1267 271 156 35 chr1 23864648 23865249 -173330183 + Lx8 LINE L1 6593 7266 -207 5 767 23 0 0 0 chr1 23865470 23865493 -173329939 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 322 293 30 10 chr1 23866268 23866368 -173329064 - PB1D9 SINE Alu -2 118 17 5 767 477 244 121 71 chr1 23866399 23866540 -173328892 - RSINE1 SINE B4 -3 162 15 5 767 957 142 13 7 chr1 23866554 23866703 -173328729 - B1_Mur4 SINE Alu 0 150 1 5 767 986 179 107 24 chr1 23866962 23867168 -173328264 + URR1B DNA MER1_type 1 223 -2 5 767 510 254 166 9 chr1 23867467 23867678 -173327754 + L1MCa LINE L1 59 302 -6206 5 767 245 201 119 0 chr1 23867886 23867978 -173327454 - B1F SINE Alu -5 144 5 5 767 277 236 79 70 chr1 23868013 23868127 -173327305 + MTEb LTR MaLR 265 379 0 5 767 13159 71 3 6 chr1 23868150 23870583 -173324849 + L1_Mus1 LINE L1 4146 6567 0 5 767 594 254 7 48 chr1 23872301 23872446 -173322986 + RSINE1 SINE B4 27 165 0 5 767 195 374 102 13 chr1 23872653 23872810 -173322622 + L2c LINE L2 3006 3176 -211 5 767 215 245 0 19 chr1 23873084 23873138 -173322294 + CT-rich Low_complexity Low_complexity 4 56 0 5 767 202 55 53 53 chr1 23873338 23873376 -173322056 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 5 767 783 247 109 16 chr1 23874287 23874534 -173320898 + MTD LTR MaLR 150 419 0 5 767 289 260 184 16 chr1 23875105 23875230 -173320202 - MIR SINE MIR -6 256 111 5 767 1333 238 59 32 chr1 23875349 23875688 -173319744 + MLT1A0 LTR MaLR 3 350 -15 5 767 230 195 24 24 chr1 23876005 23876089 -173319343 + GA-rich Low_complexity Low_complexity 1 84 0 5 767 276 111 0 0 chr1 23876108 23876153 -173319279 + (CAGGA)n Simple_repeat Simple_repeat 3 47 0 5 767 330 260 135 0 chr1 23876155 23876251 -173319181 + PB1D10 SINE Alu 1 109 -8 5 767 4082 41 21 0 chr1 23877534 23877999 -173317433 + MT2C_Mm LTR ERVL 1 475 0 5 767 459 259 18 9 chr1 23879467 23879580 -173315852 + PB1D9 SINE Alu 1 114 -6 5 767 323 272 54 0 chr1 23880492 23880584 -173314848 - ID_B1 SINE B4 -37 187 91 5 767 307 332 24 88 chr1 23881234 23881485 -173313947 - L1MC4 LINE L1 -1 8041 7807 5 767 1092 198 139 43 chr1 23881843 23882144 -173313288 + ORR1D2 LTR MaLR 37 366 -4 5 767 2267 103 3 0 chr1 23882685 23883005 -173312427 - ORR1A4 LTR MaLR -8 321 1 5 767 189 0 0 0 chr1 23883460 23883481 -173311951 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 5 767 1223 61 0 20 chr1 23883916 23884066 -173311366 + B1_Mus1 SINE Alu 2 148 0 5 767 502 236 113 8 chr1 23886268 23886392 -173309040 - ID_B1 SINE B4 -7 217 81 5 767 358 294 0 0 chr1 23886614 23886699 -173308733 + RSINE1 SINE B4 12 96 -69 5 767 670 126 0 0 chr1 23887964 23888059 -173307373 - Lx3B LINE L1 -205 6768 6674 5 767 23 0 0 0 chr1 23888111 23888134 -173307298 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 23 0 0 0 chr1 23888451 23888474 -173306958 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 305 237 101 20 chr1 23888549 23888648 -173306784 - B1F1 SINE Alu -32 117 11 5 767 291 85 0 0 chr1 23888766 23888813 -173306619 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 5 767 423 17 0 0 chr1 23889076 23889134 -173306298 - L1Md_T LINE L1 0 6582 6525 5 767 405 230 54 61 chr1 23890230 23890378 -173305054 + B1_Mur1 SINE Alu 2 148 -1 6 767 537 30 0 0 chr1 23890587 23890654 -173304778 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 767 312 319 66 36 chr1 23891266 23891432 -173304000 + RMER15 LTR ERVL 356 526 -49 6 767 278 209 143 0 chr1 23891488 23891579 -173303853 + L1ME2 LINE L1 5946 6049 -115 6 767 303 300 174 49 chr1 23891819 23891901 -173303531 - MLT2B3 LTR ERVL -282 435 117 6 767 801 259 48 10 chr1 23891901 23892108 -173303324 - MTE2b LTR MaLR -164 215 1 6 767 36906 4 0 1 chr1 23892109 23897485 -173297947 + L1Md_A LINE L1 214 5586 -297 6 767 9078 2 0 0 chr1 23897485 23898481 -173296951 + L1Md_A LINE L1 5587 6582 0 6 767 29 28 0 0 chr1 23898641 23898677 -173296755 + AT_rich Low_complexity Low_complexity 1 36 0 6 767 385 269 41 16 chr1 23899908 23900029 -173295403 - MER5A1 DNA MER1_type -40 126 3 6 767 324 48 0 0 chr1 23900113 23900155 -173295277 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 767 628 166 123 31 chr1 23901342 23901504 -173293928 - Tigger7 DNA MER2_type -114 2377 2201 6 767 677 312 126 20 chr1 23901502 23901757 -173293675 - Tigger7 DNA MER2_type -2093 398 117 6 767 532 234 66 40 chr1 23902090 23902241 -173293191 + B3 SINE B2 20 174 -42 6 767 491 271 19 6 chr1 23902244 23902404 -173293028 + L1_Mur3 LINE L1 4952 5113 -767 6 767 1320 78 15 50 chr1 23902405 23902607 -173292825 + B2_Mm2 SINE B2 1 195 0 6 767 757 251 219 2 chr1 23902681 23903000 -173292432 + Lx7 LINE L1 6226 6633 -840 6 767 824 252 139 26 chr1 23902977 23903364 -173292068 + Lx7 LINE L1 7074 7504 -192 6 767 1033 191 64 15 chr1 23903434 23903636 -173291796 + B3 SINE B2 1 212 -4 6 767 264 30 0 0 chr1 23903713 23903746 -173291686 + (CATA)n Simple_repeat Simple_repeat 1 33 0 6 767 209 277 88 10 chr1 23903879 23903981 -173291451 - L2 LINE L2 -1294 2125 2016 6 767 1123 249 153 49 chr1 23904036 23904403 -173291029 + MTD LTR MaLR 15 419 0 6 767 393 75 0 0 chr1 23904669 23904722 -173290710 + (TTGG)n Simple_repeat Simple_repeat 2 54 0 6 767 192 77 0 0 chr1 23904798 23904824 -173290608 + (T)n Simple_repeat Simple_repeat 1 26 0 6 767 251 175 0 17 chr1 23904920 23904978 -173290454 + GA-rich Low_complexity Low_complexity 4 60 0 6 767 511 257 54 34 chr1 23905312 23905461 -173289971 + RSINE1 SINE B4 4 155 -10 6 767 772 180 0 14 chr1 23905555 23905696 -173289736 + B1_Mur1 SINE Alu 3 141 -8 6 767 1290 221 72 91 chr1 23905949 23906378 -173289054 + RMER16 LTR ERVK 113 533 0 6 767 297 0 0 0 chr1 23906380 23906413 -173289019 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 767 181 356 59 0 chr1 23906445 23906546 -173288886 - L3 LINE CR1 -115 4374 4268 6 767 7718 47 1 1 chr1 23907760 23908812 -173286620 + L1_Mus1 LINE L1 5529 6567 0 6 767 1247 41 0 0 chr1 23908812 23908958 -173286474 + B1_Mus2 SINE Alu 2 147 0 6 767 309 96 0 0 chr1 23908958 23908996 -173286436 + (A)n Simple_repeat Simple_repeat 1 38 0 6 767 232 250 40 40 chr1 23909047 23909122 -173286310 + PB1D10 SINE Alu 43 117 0 6 767 249 276 69 95 chr1 23909520 23909636 -173285796 + B1F2 SINE Alu 4 148 -1 6 767 379 316 88 27 chr1 23909731 23910059 -173285373 - ORR1E LTR MaLR -4 355 1 6 767 228 193 35 17 chr1 23910106 23910164 -173285268 + L1MD2 LINE L1 5606 5664 -695 6 767 915 231 113 86 chr1 23910207 23910544 -173284888 - MTD LTR MaLR -73 346 1 6 767 305 337 0 0 chr1 23910575 23910661 -173284771 - B3A SINE B2 -107 91 6 6 767 244 349 52 37 chr1 23910676 23911000 -173284432 + L1MD2 LINE L1 5924 6252 -107 6 767 5458 53 3 9 chr1 23911410 23912100 -173283332 - L1Md_F2 LINE L1 -9 6573 5888 6 767 2380 28 0 0 chr1 23912100 23912391 -173283041 + L1Md_F2 LINE L1 5613 5903 -679 6 767 325 286 43 35 chr1 23912492 23912608 -173282824 + B1F1 SINE Alu 33 149 0 6 767 260 357 43 26 chr1 23912643 23912758 -173282674 + MER3 DNA MER1_type 20 136 -73 6 767 309 159 0 0 chr1 23912812 23912875 -173282557 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 767 22 0 0 0 chr1 23912949 23912971 -173282461 + AT_rich Low_complexity Low_complexity 1 22 0 6 767 243 0 0 0 chr1 23913377 23913404 -173282028 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 767 24 67 0 0 chr1 23913631 23913676 -173281756 + AT_rich Low_complexity Low_complexity 1 45 0 6 767 269 209 84 118 chr1 23914092 23914211 -173281221 - ORR1D1 LTR MaLR -259 115 1 6 767 263 271 0 28 chr1 23914518 23914590 -173280842 + GA-rich Low_complexity Low_complexity 1 70 0 6 767 364 268 87 8 chr1 23914693 23914945 -173280487 + L1M2 LINE L1 2908 3179 -2964 6 767 360 236 26 26 chr1 23915331 23915444 -173279988 - BC1_Mm scRNA scRNA -29 123 11 6 767 1106 241 49 30 chr1 23916892 23917221 -173278211 + Lx6 LINE L1 7063 7397 -63 6 767 984 175 244 4 chr1 23917275 23917488 -173277944 + MTC LTR MaLR 1 264 -157 6 767 241 180 148 0 chr1 23917567 23917628 -173277804 - L2 LINE L2 -1107 2312 2243 6 767 195 254 0 0 chr1 23917751 23917814 -173277618 + GA-rich Low_complexity Low_complexity 2 64 0 6 767 221 182 68 0 chr1 23917817 23917861 -173277571 + polypurine Low_complexity Low_complexity 2 48 0 6 767 675 306 81 23 chr1 23917998 23918306 -173277126 - MER2 DNA MER2_type -13 332 7 6 767 795 115 0 0 chr1 23918546 23918659 -173276773 + B1_Mus2 SINE Alu 35 147 0 6 767 212 275 0 38 chr1 23918703 23918756 -173276676 + ID SINE ID 23 73 -151 6 767 523 273 87 44 chr1 23919021 23919434 -173275998 - L1MCa LINE L1 -5743 1008 268 6 767 1231 14 0 39 chr1 23920493 23920628 -173274804 + B1_Mus1 SINE Alu 2 136 -12 6 767 807 93 0 0 chr1 23920628 23920746 -173274686 + (GAAAA)n Simple_repeat Simple_repeat 1 118 0 6 767 1231 14 0 39 chr1 23920746 23920763 -173274669 + B1_Mus1 SINE Alu 137 148 0 6 767 319 245 85 14 chr1 23920774 23920915 -173274517 - L1M4 LINE L1 -1056 5090 4940 6 767 458 273 167 11 chr1 23921222 23921492 -173273940 - L1M4 LINE L1 -1607 4539 4228 6 767 595 300 19 6 chr1 23922296 23922457 -173272975 + RSINE1 SINE B4 3 165 0 6 767 264 59 0 0 chr1 23923142 23923176 -173272256 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 767 324 0 0 0 chr1 23923176 23923211 -173272221 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 767 218 311 0 0 chr1 23923222 23923312 -173272120 + (TG)n Simple_repeat Simple_repeat 2 91 0 6 767 987 188 202 116 chr1 23923635 23924146 -173271286 + RMER4B LTR ERVK 31 585 0 6 767 187 369 100 106 chr1 23924972 23925321 -173270111 - L2b LINE L2 0 3375 3029 6 767 1161 44 0 0 chr1 23925430 23925567 -173269865 - B1_Mm SINE Alu -9 138 2 6 767 211 286 27 41 chr1 23926575 23926648 -173268784 + ID4 SINE ID 8 79 -4 6 767 228 67 0 0 chr1 23926656 23926686 -173268746 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 767 417 223 280 0 chr1 23927238 23927395 -173268037 - B3 SINE B2 -14 202 2 6 767 309 26 0 0 chr1 23928338 23928376 -173267056 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 767 255 197 0 43 chr1 23929000 23929069 -173266363 + (CGGG)n Simple_repeat Simple_repeat 3 68 0 6 767 220 127 18 18 chr1 23929113 23929169 -173266263 + (CGG)n Simple_repeat Simple_repeat 3 58 0 6 767 21 82 0 0 chr1 23929198 23929247 -173266185 + GC_rich Low_complexity Low_complexity 1 49 0 6 767 349 357 108 9 chr1 23929870 23930082 -173265350 - RMER15 LTR ERVL -15 560 328 6 767 996 246 98 7 chr1 23930596 23930870 -173264562 - ORR1D2 LTR MaLR -71 299 1 6 767 297 0 0 0 chr1 23930924 23930957 -173264475 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 767 198 0 0 0 chr1 23931085 23931107 -173264325 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 767 315 0 0 0 chr1 23931138 23931173 -173264259 + (T)n Simple_repeat Simple_repeat 1 35 0 6 767 805 145 0 42 chr1 23931215 23931356 -173264076 - URR1B DNA MER1_type 0 225 91 6 767 1886 112 50 90 chr1 23931356 23931637 -173263795 + ORR1A4 LTR MaLR 1 295 -34 6 767 2155 183 65 45 chr1 23931637 23932187 -173263245 + RLTR31_Mm LTR ERVK 1 561 0 6 767 1886 112 50 90 chr1 23932187 23932248 -173263184 + ORR1A4 LTR MaLR 296 329 0 6 767 3234 90 22 2 chr1 23933191 23933646 -173261786 - RMER16 LTR ERVK 0 533 70 6 767 329 292 88 84 chr1 23933693 23933932 -173261500 - Charlie5 DNA MER1_type -9 2615 2376 6 767 220 192 39 0 chr1 23934196 23934248 -173261184 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 6 767 778 172 27 14 chr1 23934269 23934416 -173261016 - B1_Mur2 SINE Alu 0 149 1 6 767 2363 89 3 60 chr1 23934513 23934860 -173260572 + ORR1A2 LTR MaLR 1 327 0 6 767 379 380 39 12 chr1 23935269 23935527 -173259905 - L2 LINE L2 -671 2748 2484 6 767 351 0 0 0 chr1 23935886 23935925 -173259507 + (TTG)n Simple_repeat Simple_repeat 2 40 0 6 767 530 261 25 0 chr1 23935966 23936085 -173259347 + RSINE1 SINE B4 8 129 -36 6 767 324 0 0 0 chr1 23936139 23936175 -173259257 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 767 26 0 0 0 chr1 23936739 23936765 -173258667 + AT_rich Low_complexity Low_complexity 1 26 0 6 767 661 282 32 6 chr1 23936783 23936940 -173258492 - RSINE1 SINE B4 -2 163 3 6 767 223 149 56 33 chr1 23937621 23937711 -173257721 + (TA)n Simple_repeat Simple_repeat 1 92 0 6 767 281 191 0 0 chr1 23937711 23937753 -173257679 - B1_Mur1 SINE Alu -9 140 99 6 767 306 0 0 0 chr1 23937756 23937790 -173257642 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 767 261 0 0 0 chr1 23937790 23937818 -173257614 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 767 333 0 0 0 chr1 23938087 23938124 -173257308 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 767 2257 128 41 0 chr1 23938128 23938473 -173256959 + RLTR30 LTR ERV1 14 372 -7 6 767 819 214 0 0 chr1 23938611 23938751 -173256681 - B1_Mur1 SINE Alu -9 140 1 6 767 432 322 0 17 chr1 23938864 23938984 -173256448 - RSINE1 SINE B4 0 165 48 6 767 436 274 64 19 chr1 23939704 23939860 -173255572 + MLT1A0 LTR MaLR 9 171 -194 7 767 2056 89 11 0 chr1 23939921 23940203 -173255229 + ORR1A2 LTR MaLR 43 327 0 7 767 253 179 71 0 chr1 23940458 23940514 -173254918 + L1M5 LINE L1 5070 5129 -1017 7 767 574 282 14 0 chr1 23940576 23940718 -173254714 + ID_B1 SINE B4 81 224 0 7 767 629 226 211 104 chr1 23940756 23941048 -173254384 + ORR1D1 LTR MaLR 3 347 -27 7 767 1258 21 0 0 chr1 23941048 23941193 -173254239 - B1_Mm SINE Alu -1 146 2 7 767 629 226 211 104 chr1 23941193 23941236 -173254196 + ORR1D1 LTR MaLR 348 374 0 7 767 229 306 0 0 chr1 23941377 23941449 -173253983 + L1MA5 LINE L1 5399 5470 -821 7 767 270 236 22 11 chr1 23942429 23942519 -173252913 + T-rich Low_complexity Low_complexity 2 92 0 7 767 1126 93 9 60 chr1 23942519 23942737 -173252695 - Lx LINE L1 0 6654 6448 7 767 646 191 38 0 chr1 23942921 23943052 -173252380 + Lx7 LINE L1 6208 6343 -1353 7 767 414 0 0 0 chr1 23943103 23943149 -173252283 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 7 767 550 276 64 115 chr1 23943152 23943332 -173252100 - MT2B LTR ERVL -45 556 370 7 767 493 192 0 0 chr1 23943332 23943436 -173251996 + L1_Mus3 LINE L1 6531 6634 -4 7 767 550 276 64 115 chr1 23943436 23943550 -173251882 - MT2B LTR ERVL -232 369 278 7 767 509 267 50 88 chr1 23943561 23943603 -173251829 + B3 SINE B2 1 48 -168 7 767 1150 58 0 0 chr1 23943603 23943741 -173251691 + B1_Mus2 SINE Alu 3 140 -7 7 767 189 0 0 0 chr1 23943742 23943763 -173251669 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 767 467 198 279 95 chr1 23943763 23943900 -173251532 + B3 SINE B2 37 215 -1 7 767 524 251 239 96 chr1 23943900 23943961 -173251471 - MT2B LTR ERVL -413 120 65 7 767 2476 75 58 39 chr1 23943961 23944041 -173251391 - BGLII LTR ERVK 0 421 348 7 767 4363 61 11 11 chr1 23944041 23944601 -173250831 + LTRIS2 LTR ERV1 5 564 0 7 767 2476 75 58 39 chr1 23944601 23944933 -173250499 - BGLII LTR ERVK -74 347 1 7 767 358 167 30 0 chr1 23944934 23945000 -173250432 - MT2B LTR ERVL -465 68 1 7 767 262 256 144 53 chr1 23945042 23945174 -173250258 + L1ME2 LINE L1 5892 6035 -129 7 767 329 312 0 0 chr1 23945220 23945297 -173250135 - ID4_ SINE ID -6 77 1 7 767 365 216 186 0 chr1 23945319 23945421 -173250011 - B1F SINE Alu -26 123 3 7 767 453 248 98 0 chr1 23945658 23945791 -173249641 - B1_Mur1 SINE Alu -1 148 3 7 767 422 307 7 14 chr1 23945921 23946060 -173249372 + L1MA5 LINE L1 5774 5911 -380 7 767 1207 219 78 50 chr1 23946070 23946206 -173249226 + RMER4B LTR ERVK 17 149 -436 7 767 6543 83 3 6 chr1 23946206 23947091 -173248341 - L1_Mus3 LINE L1 -6 6632 5750 7 767 1207 204 71 40 chr1 23947091 23947464 -173247968 + RMER4B LTR ERVK 150 576 -9 7 767 627 313 43 18 chr1 23947476 23947805 -173247627 + L1MA5 LINE L1 5958 6294 -6 7 767 669 97 0 3 chr1 23947814 23947933 -173247499 + B2_Mm2 SINE B2 2 118 -98 7 767 683 102 0 18 chr1 23948297 23948407 -173247025 + B2_Mm1t SINE B2 86 193 0 7 767 526 216 118 25 chr1 23949005 23949124 -173246308 + B1F2 SINE Alu 14 143 -6 7 767 291 93 0 0 chr1 23949476 23949519 -173245913 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 7 767 654 365 77 22 chr1 23949980 23950397 -173245035 + LTR16B LTR ERVL 22 461 -2 7 767 408 297 27 49 chr1 23950469 23950692 -173244740 - L2 LINE L2 -586 2833 2616 7 767 393 295 116 48 chr1 23950911 23950984 -173244448 + ID SINE ID 3 72 -152 7 767 180 0 0 0 chr1 23950984 23951004 -173244428 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 7 767 393 295 116 48 chr1 23951004 23951073 -173244359 + ID_B1 SINE B4 73 153 -71 7 767 1956 96 63 3 chr1 23951073 23951375 -173244057 - ORR1A2 LTR MaLR 0 327 8 7 767 237 216 22 187 chr1 23951377 23951468 -173243964 + B1_Mur1 SINE Alu 74 149 0 7 767 288 0 0 0 chr1 23951469 23951501 -173243931 + (CCA)n Simple_repeat Simple_repeat 1 32 0 7 767 288 0 0 0 chr1 23951741 23951773 -173243659 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 767 711 261 19 0 chr1 23951783 23951940 -173243492 - B3A SINE B2 -38 160 1 7 767 5181 189 55 14 chr1 23952214 23953386 -173242046 + RMER12B LTR ERVK 1 1220 -184 7 767 378 222 33 97 chr1 23953403 23953583 -173241849 + RMER12B LTR ERVK 1342 1572 0 7 767 889 247 107 4 chr1 23954199 23954443 -173240989 + B4 SINE B4 24 292 0 7 767 345 311 50 8 chr1 23954526 23954646 -173240786 + MLT1A1 LTR MaLR 277 401 -7 7 767 2186 144 27 11 chr1 23956213 23956584 -173238848 + ORR1C1 LTR MaLR 1 377 -1 7 767 1957 233 74 6 chr1 23956888 23957363 -173238069 - RMER15 LTR ERVL 0 575 69 7 767 213 244 0 0 chr1 23957477 23957518 -173237914 + B1F SINE Alu 1 41 -108 7 767 732 297 8 44 chr1 23957559 23957809 -173237623 - MER45R DNA Tip100 -280 1301 1061 7 767 565 248 124 0 chr1 23957809 23957954 -173237478 + RSINE1 SINE B4 3 165 0 7 767 264 184 13 45 chr1 23957973 23958127 -173237305 + (CA)n Simple_repeat Simple_repeat 2 150 0 7 767 224 200 22 29 chr1 23958181 23958320 -173237112 + (CA)n Simple_repeat Simple_repeat 2 139 0 7 767 366 198 23 29 chr1 23958337 23958509 -173236923 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 767 372 250 0 0 chr1 23958531 23958603 -173236829 + RSINE1 SINE B4 39 110 -55 7 767 400 290 124 29 chr1 23959009 23959165 -173236267 - L2 LINE L2 -800 2619 2459 7 767 2304 108 9 0 chr1 23959165 23959488 -173235944 - ORR1A3 LTR MaLR 0 326 1 7 767 400 290 124 29 chr1 23959488 23959679 -173235753 - L2 LINE L2 -961 2458 2239 7 767 833 201 0 0 chr1 23959894 23960038 -173235394 + B1_Mur2 SINE Alu 4 147 -2 7 767 292 22 0 43 chr1 23960054 23960101 -173235331 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 767 225 0 0 0 chr1 23960101 23960126 -173235306 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 767 398 271 189 0 chr1 23960137 23960259 -173235173 - B3A SINE B2 -53 145 1 7 767 288 0 0 0 chr1 23960270 23960302 -173235130 + (T)n Simple_repeat Simple_repeat 1 32 0 7 767 512 185 22 0 chr1 23960316 23960408 -173235024 + RSINE1 SINE B4 9 102 -63 7 767 864 81 0 81 chr1 23960416 23960564 -173234868 - RLTR11A2 LTR ERVK -391 136 1 7 767 246 337 27 77 chr1 23960819 23961041 -173234391 + L2 LINE L2 1396 1606 -1813 7 767 880 197 69 29 chr1 23961976 23962180 -173233252 + B3 SINE B2 5 216 0 7 767 948 117 0 0 chr1 23962323 23962468 -173232964 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 7 767 435 301 30 65 chr1 23962751 23962820 -173232612 + MER21B LTR ERV1 465 534 -329 7 767 593 276 168 66 chr1 23962820 23962918 -173232514 - MTD LTR MaLR 0 419 333 7 767 207 0 0 0 chr1 23962918 23962941 -173232491 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 7 767 593 276 168 66 chr1 23962941 23963222 -173232210 - MTD LTR MaLR -87 332 1 7 767 435 301 30 65 chr1 23963222 23963351 -173232081 + MER21B LTR ERV1 535 656 -207 7 767 409 151 41 0 chr1 23963618 23963691 -173231741 + ID_B1 SINE B4 80 155 -69 7 767 466 326 49 37 chr1 23963680 23963925 -173231507 + B4A SINE B4 43 290 -2 7 767 231 295 0 0 chr1 23964210 23964271 -173231161 + ID4 SINE ID 23 83 0 7 767 247 290 0 16 chr1 23964271 23964334 -173231098 + GA-rich Low_complexity Low_complexity 3 64 0 7 767 1242 7 0 26 chr1 23964574 23964585 -173230847 - B1_Mus2 SINE Alu 0 147 139 7 767 189 0 0 0 chr1 23964585 23964606 -173230826 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 767 1242 7 0 26 chr1 23964606 23964745 -173230687 - B1_Mus2 SINE Alu -9 138 1 7 767 259 333 0 0 chr1 23964790 23964871 -173230561 + MER90a LTR ERV1 484 564 -50 7 767 1223 283 43 90 chr1 23964990 23965479 -173229953 - MTE-int LTR MaLR -70 1510 1045 7 767 2007 173 132 37 chr1 23965502 23965993 -173229439 + Lx4B LINE L1 6521 7058 0 7 767 238 318 0 16 chr1 23966071 23966135 -173229297 + ID4_ SINE ID 19 81 -2 7 767 3193 48 5 12 chr1 23966612 23967011 -173228421 + MTA_Mm LTR MaLR 1 396 0 7 767 252 0 0 0 chr1 23967642 23967670 -173227762 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 767 49 18 0 0 chr1 23968010 23968066 -173227366 + AT_rich Low_complexity Low_complexity 1 56 0 7 767 709 273 100 41 chr1 23968151 23968422 -173227010 - B4A SINE B4 -3 289 3 7 767 502 222 0 36 chr1 23968503 23968615 -173226817 - B1F2 SINE Alu 0 149 42 7 767 293 132 56 19 chr1 23968612 23968666 -173226766 - B1_Mur3 SINE Alu -55 94 39 7 767 546 0 136 0 chr1 23968707 23968861 -173226571 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 7 767 380 68 34 0 chr1 23968902 23968961 -173226471 + (TTTTC)n Simple_repeat Simple_repeat 3 63 0 7 767 1291 212 106 76 chr1 23969447 23969958 -173225474 + RLTR11A LTR ERVK 1 526 -2 7 767 270 0 0 0 chr1 23969973 23970003 -173225429 + (TCC)n Simple_repeat Simple_repeat 2 31 0 7 767 1098 135 0 0 chr1 23970003 23970181 -173225251 + (TTC)n Simple_repeat Simple_repeat 1 178 0 7 767 496 207 207 0 chr1 23970182 23970293 -173225139 - B1_Mur2 SINE Alu -13 136 3 7 767 1344 244 39 165 chr1 23971346 23971915 -173223517 - RLTR18B LTR ERVK -4 508 12 7 767 1336 179 55 21 chr1 23971931 23972222 -173223210 - RLTR18-int LTR ERVK -2 5359 5059 7 767 1228 48 0 0 chr1 23972227 23972374 -173223058 + B1_Mus2 SINE Alu 1 147 0 7 767 1967 175 10 54 chr1 23972402 23972788 -173222644 - RLTR18-int LTR ERVK -308 5053 4685 7 767 1676 188 20 10 chr1 23972811 23973117 -173222315 - RLTR18-int LTR ERVK -656 4705 4397 7 767 293 243 49 6 chr1 23973551 23973653 -173221779 - B3A SINE B2 -56 139 23 7 767 1151 41 7 27 chr1 23973664 23973814 -173221618 - B1_Mus2 SINE Alu 0 147 1 7 767 28 61 0 0 chr1 23973952 23974001 -173221431 + AT_rich Low_complexity Low_complexity 1 49 0 7 767 1111 108 50 22 chr1 23974009 23974189 -173221243 + B2_Mm2 SINE B2 2 186 -9 7 767 1241 43 0 6 chr1 23974286 23974449 -173220983 + L1_Mus2 LINE L1 6404 6565 -1 7 767 3994 217 85 76 chr1 23974581 23976149 -173219283 - RMER1A Other Other -2 1028 1 7 767 1055 102 0 0 chr1 23976699 23976836 -173218596 + B1_Mus1 SINE Alu 5 141 -7 7 767 493 82 55 0 chr1 23977609 23977682 -173217750 - ORR1A3 LTR MaLR 0 326 250 7 767 2856 141 35 26 chr1 23977682 23978220 -173217212 + RLTR13D1 LTR ERVK 1 543 -359 7 767 3523 69 19 28 chr1 23978193 23978301 -173217131 + RLTR13D1 LTR ERVK 227 339 -467 7 767 2839 19 0 3 chr1 23978301 23978624 -173216808 - RLTRETN_Mm LTR ERVK 0 322 1 7 767 3523 82 27 28 chr1 23978624 23979091 -173216341 + RLTR13D1 LTR ERVK 340 808 0 7 767 1506 120 24 20 chr1 23979091 23979345 -173216087 - ORR1A2 LTR MaLR -72 255 1 7 767 2952 216 48 65 chr1 23979570 23979683 -173215749 - RLTR18-int LTR ERVK -1782 3579 3462 7 767 318 26 0 0 chr1 23979683 23979722 -173215710 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 767 2952 216 48 65 chr1 23979722 23979822 -173215610 - RLTR18-int LTR ERVK -1900 3461 3394 7 767 1257 41 0 0 chr1 23979822 23979968 -173215464 - B1_Mm SINE Alu 0 147 2 7 767 2952 216 48 65 chr1 23979968 23980541 -173214891 - RLTR18-int LTR ERVK -1968 3393 2806 7 767 447 258 101 24 chr1 23980549 23980761 -173214671 - RLTR18-int LTR ERVK -3151 2210 2090 7 767 218 143 0 20 chr1 23980773 23980823 -173214609 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 767 1079 225 23 76 chr1 23981028 23981331 -173214101 - RLTR18-int LTR ERVK -5023 338 52 7 767 732 286 47 68 chr1 23981332 23981920 -173213512 - RLTR18B LTR ERVK -5 611 36 7 767 2781 121 33 30 chr1 23981920 23982380 -173213052 + RMER6B LTR ERVK 1 461 0 8 767 732 232 6 47 chr1 23982380 23982423 -173213009 - RLTR18B LTR ERVK -468 44 2 7 767 432 0 0 0 chr1 23982924 23982972 -173212460 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 767 558 224 60 0 chr1 23982973 23983089 -173212343 - B3A SINE B2 -75 123 1 8 767 234 106 213 0 chr1 23983202 23983249 -173212183 + RMER12 LTR ERVK 4 60 -1262 8 767 234 0 0 0 chr1 23983255 23983281 -173212151 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 767 185 83 0 27 chr1 23983281 23983318 -173212114 + (TTG)n Simple_repeat Simple_repeat 2 37 0 8 767 4526 140 103 92 chr1 23983325 23984087 -173211345 + RMER12 LTR ERVK 64 782 -540 8 767 459 52 0 0 chr1 23984087 23984145 -173211287 + (TATG)n Simple_repeat Simple_repeat 2 59 0 8 767 4526 140 103 92 chr1 23984145 23984272 -173211160 + RMER12 LTR ERVK 783 890 -432 8 767 351 60 0 0 chr1 23984272 23984322 -173211110 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 767 4526 140 103 92 chr1 23984322 23984519 -173210913 + RMER12 LTR ERVK 891 1162 -160 8 95 1275 158 219 0 chr1 23986028 23986325 -173209107 - ORR1B2 LTR MaLR -5 362 1 8 768 206 186 23 0 chr1 23986877 23986920 -173208512 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 8 768 4903 187 37 39 chr1 23986922 23988451 -173206981 - Lx6 LINE L1 -712 6748 5220 8 768 674 137 0 0 chr1 23988446 23988548 -173206884 + L1_Mur3 LINE L1 4037 4138 -1742 8 768 5716 223 88 11 chr1 23988616 23988902 -173206530 - L1_Mur3 LINE L1 -1207 4679 4295 8 768 219 69 0 0 chr1 23988902 23988931 -173206501 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 8 768 6754 154 23 15 chr1 23988931 23990154 -173205278 - L1_Mur3 LINE L1 -1592 4294 3049 8 768 1168 124 31 0 chr1 23990167 23990361 -173205071 - URR1A DNA MER1_type 0 226 27 8 768 911 229 53 19 chr1 23990521 23990730 -173204702 + B3 SINE B2 1 216 0 8 768 352 316 22 0 chr1 23991447 23991583 -173203849 + MER57E1 LTR ERV1 234 372 0 8 768 356 0 23 0 chr1 23991701 23991745 -173203687 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 768 1954 149 57 30 chr1 23991807 23992209 -173203223 - MTC LTR MaLR -8 413 1 8 768 22 35 0 0 chr1 23992293 23992322 -173203110 + AT_rich Low_complexity Low_complexity 1 29 0 8 768 313 318 25 56 chr1 23992780 23992940 -173202492 + B4A SINE B4 1 155 -137 8 768 1558 194 115 78 chr1 23992938 23993425 -173202007 - RMER19B LTR ERVK -23 879 375 8 768 822 284 25 10 chr1 23993430 23993633 -173201799 + B3 SINE B2 4 209 -7 8 768 353 248 239 8 chr1 23994048 23994178 -173201254 + RSINE1 SINE B4 3 162 -3 8 768 183 129 0 0 chr1 23994749 23994780 -173200652 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 768 329 218 109 0 chr1 23994967 23995068 -173200364 - MLT1E1A LTR MaLR -110 570 459 8 768 1379 81 11 5 chr1 23995226 23995413 -173200019 - B2_Mm1a SINE B2 -3 190 3 8 768 361 251 46 29 chr1 23995743 23995913 -173199519 - LTR16B LTR ERVL -2 478 311 8 768 910 250 100 35 chr1 23995850 23996350 -173199082 - RLTR18B LTR ERVK -89 527 69 8 768 11808 45 5 1 chr1 23996350 23997783 -173197649 + L1Md_F3 LINE L1 4148 5586 -297 8 768 8574 32 5 0 chr1 23997783 23998775 -173196657 + L1Md_F3 LINE L1 5587 6583 -1 8 768 222 136 0 0 chr1 23998986 23999030 -173196402 + (A)n Simple_repeat Simple_repeat 1 44 0 8 768 395 222 33 0 chr1 23999032 23999122 -173196310 - RLTR18B LTR ERVK -419 93 1 8 768 278 274 17 58 chr1 23999122 23999220 -173196212 - LTR16B LTR ERVL -136 327 235 8 768 614 240 60 39 chr1 23999275 23999457 -173195975 - MTEb LTR MaLR 0 379 194 8 768 516 138 0 0 chr1 23999461 23999541 -173195891 + MTC LTR MaLR 1 80 -341 8 768 372 240 62 23 chr1 23999813 23999941 -173195491 + B3 SINE B2 82 214 -2 8 768 1167 201 0 0 chr1 24000054 24000263 -173195169 + B3 SINE B2 3 211 -5 1 768 264 30 0 0 chr1 24000365 24000398 -173195034 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 2 768 567 239 76 21 chr1 24000928 24001073 -173194359 + RSINE1 SINE B4 8 160 -5 3 768 2930 21 18 0 chr1 24001121 24001461 -173193971 + ORR1A1 LTR MaLR 1 346 0 4 768 394 364 20 6 chr1 24001462 24001641 -173193791 - MIR SINE MIR -65 197 15 5 768 363 279 35 76 chr1 24001694 24001865 -173193567 + RSINE1 SINE B4 2 165 0 6 768 1581 221 49 20 chr1 24001890 24002297 -173193135 - MTD LTR MaLR 0 419 1 7 768 577 268 17 11 chr1 24002335 24002516 -173192916 + B3A SINE B2 1 182 -16 8 768 804 241 79 20 chr1 24002568 24002771 -173192661 + B3 SINE B2 1 215 -1 9 768 928 116 65 0 chr1 24003780 24003918 -173191514 - B1_Mur3 SINE Alu 0 149 3 1 768 224 368 0 0 chr1 24004045 24004132 -173191300 - MIR SINE MIR -46 216 130 1 768 250 231 244 0 chr1 24004625 24004703 -173190729 - MLT1A LTR MaLR -238 136 40 1 768 195 100 0 0 chr1 24004792 24004822 -173190610 + (CACG)n Simple_repeat Simple_repeat 2 31 0 1 768 360 338 155 0 chr1 24005367 24005580 -173189852 + L1ME1 LINE L1 5865 6110 -69 1 768 671 206 7 28 chr1 24005643 24005788 -173189644 + B1_Mur1 SINE Alu 3 144 -5 1 768 299 269 62 31 chr1 24005804 24005900 -173189532 - PB1D10 SINE Alu -11 106 8 1 768 338 307 92 13 chr1 24006032 24006184 -173189248 - RSINE1 SINE B4 0 165 2 1 768 269 315 70 35 chr1 24006484 24006599 -173188833 - PB1D7 SINE Alu -1 119 1 1 768 970 71 252 0 chr1 24006666 24006821 -173188611 + B2_Mm2 SINE B2 1 194 -1 1 768 800 276 127 28 chr1 24007650 24007941 -173187491 + MTE2b LTR MaLR 1 320 -59 2 768 349 277 56 119 chr1 24008144 24008304 -173187128 + B3A SINE B2 49 198 0 2 768 1283 64 14 134 chr1 24008377 24008594 -173186838 - B2_Mm2 SINE B2 -3 192 2 2 768 234 0 0 0 chr1 24008594 24008620 -173186812 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 768 513 119 12 12 chr1 24008622 24008707 -173186725 - B1_Mur3 SINE Alu -13 136 52 2 768 257 198 74 90 chr1 24008637 24008759 -173186673 - MT2B2 LTR ERVL -307 277 158 2 768 256 299 155 0 chr1 24009322 24009419 -173186013 - PB1D10 SINE Alu -5 112 1 2 768 222 278 14 14 chr1 24009447 24009520 -173185912 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 768 237 200 20 0 chr1 24009457 24009507 -173185925 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 2 768 657 296 56 39 chr1 24009526 24009811 -173185621 - B4A SINE B4 0 292 3 2 768 3389 35 2 0 chr1 24010651 24011048 -173184384 - MTB LTR MaLR 0 400 3 3 768 395 185 37 0 chr1 24012074 24012155 -173183277 - B1F2 SINE Alu -63 86 3 3 768 343 232 10 69 chr1 24012155 24012171 -173183261 - MT2B2 LTR ERVL -338 241 151 3 768 648 226 200 6 chr1 24012974 24013139 -173182293 + B3 SINE B2 3 199 -17 3 768 726 219 14 51 chr1 24013532 24013716 -173181716 - B2_Mm2 SINE B2 -25 191 2 3 768 7132 107 43 8 chr1 24014617 24015725 -173179707 + Lx3A LINE L1 5833 6979 -2 3 768 1214 181 246 16 chr1 24015738 24016209 -173179223 + ORR1D1-int LTR MaLR 771 1509 0 3 768 852 209 87 39 chr1 24016209 24016496 -173178936 + ORR1D1 LTR MaLR 1 374 0 3 768 228 316 67 73 chr1 24016702 24016866 -173178566 - MIRb SINE MIR -96 172 10 3 768 36 40 0 0 chr1 24017625 24017675 -173177757 + AT_rich Low_complexity Low_complexity 1 50 0 3 768 23 0 0 0 chr1 24019399 24019422 -173176010 + AT_rich Low_complexity Low_complexity 1 23 0 3 768 404 235 50 9 chr1 24019817 24019973 -173175459 - L1MA5 LINE L1 -363 5949 5703 4 768 1348 80 26 16 chr1 24020178 24020368 -173175064 - B2_Mm2 SINE B2 -3 192 1 4 768 315 0 0 0 chr1 24020708 24020743 -173174689 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 4 768 1156 69 0 0 chr1 24022101 24022246 -173173186 + B1_Mus1 SINE Alu 3 147 -1 4 768 225 164 36 0 chr1 24022251 24022306 -173173126 + A-rich Low_complexity Low_complexity 2 58 0 4 768 837 248 66 15 chr1 24023377 24023574 -173171858 - B3 SINE B2 -3 213 7 4 768 6521 192 45 24 chr1 24023667 24024026 -173171406 + Lx7 LINE L1 4283 4658 -1222 4 768 275 0 0 28 chr1 24024026 24024062 -173171370 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 768 6521 217 65 29 chr1 24024062 24026065 -173169367 + Lx7 LINE L1 4659 6752 -944 4 768 1443 53 5 31 chr1 24026065 24026261 -173169171 - B2_Mm1t SINE B2 -2 191 1 4 768 4486 254 95 36 chr1 24026261 24026790 -173168642 + Lx7 LINE L1 6753 7310 -386 4 768 27 49 0 0 chr1 24026790 24026831 -173168601 + AT_rich Low_complexity Low_complexity 1 41 0 4 768 25 75 0 0 chr1 24027673 24027726 -173167706 + AT_rich Low_complexity Low_complexity 1 53 0 5 768 387 294 227 0 chr1 24028298 24028461 -173166971 - B3 SINE B2 -15 201 2 5 768 24 0 0 0 chr1 24029083 24029107 -173166325 + AT_rich Low_complexity Low_complexity 1 24 0 5 768 1378 44 49 11 chr1 24029112 24029295 -173166137 + B2_Mm1t SINE B2 3 192 -1 5 768 421 357 64 27 chr1 24029321 24029476 -173165956 + B3 SINE B2 11 175 -41 5 768 420 20 0 0 chr1 24029476 24029525 -173165907 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 768 421 357 64 27 chr1 24029525 24029556 -173165876 + B3 SINE B2 176 204 -12 5 768 246 301 21 56 chr1 24029723 24029841 -173165591 + B4 SINE B4 2 118 -174 5 768 629 282 72 22 chr1 24029957 24030138 -173165294 + B4 SINE B4 81 270 -22 5 768 1055 277 13 47 chr1 24030498 24030797 -173164635 - B4A SINE B4 -2 290 2 5 768 371 73 0 18 chr1 24030848 24030904 -173164528 + (TATG)n Simple_repeat Simple_repeat 4 58 0 5 768 22 35 0 0 chr1 24032521 24032550 -173162882 + AT_rich Low_complexity Low_complexity 1 29 0 5 768 215 170 0 21 chr1 24033193 24033241 -173162191 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 768 424 224 33 33 chr1 24034350 24034470 -173160962 - PB1D9 SINE Alu 0 120 1 6 768 742 238 19 23 chr1 24038224 24038439 -173156993 + B3 SINE B2 1 214 -2 6 768 306 0 0 0 chr1 24038609 24038643 -173156789 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 768 335 226 118 22 chr1 24038683 24038819 -173156613 - L1ME2z LINE L1 -389 6055 5907 6 768 852 152 21 0 chr1 24038942 24039087 -173156345 - B1_Mus1 SINE Alu 0 148 1 6 768 210 256 132 12 chr1 24039885 24039968 -173155464 + MIRc SINE MIR 76 168 -100 6 768 672 216 8 0 chr1 24040139 24040273 -173155159 - B1_Mur1 SINE Alu -1 148 14 6 768 341 300 100 0 chr1 24041940 24042070 -173153362 - B1F SINE Alu -6 143 1 6 768 714 187 50 0 chr1 24042098 24042237 -173153195 + B1_Mur2 SINE Alu 4 149 0 6 768 369 43 0 0 chr1 24042894 24042941 -173152491 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 7 768 278 300 0 3 chr1 24042944 24043016 -173152416 - ID4 SINE ID -9 74 4 7 768 6111 32 0 0 chr1 24043159 24043874 -173151558 + L1Md_T LINE L1 5868 6582 0 7 768 423 305 19 82 chr1 24044603 24044711 -173150721 + L1MB7 LINE L1 5479 5575 -599 7 768 1182 40 0 33 chr1 24044711 24044864 -173150568 + B1_Mus1 SINE Alu 1 148 0 7 768 423 305 19 82 chr1 24044864 24045023 -173150409 + L1MB7 LINE L1 5576 5729 -445 7 768 333 302 103 0 chr1 24045179 24045295 -173150137 - ORR1E LTR MaLR -228 131 4 7 768 276 267 238 14 chr1 24045305 24045586 -173149846 + L1MB7 LINE L1 5785 6128 -56 7 768 403 302 54 7 chr1 24046173 24046292 -173149140 - PB1D10 SINE Alu -7 110 12 7 768 223 291 18 0 chr1 24046252 24046307 -173149125 - B4A SINE B4 -156 136 81 7 768 21 82 0 0 chr1 24047032 24047081 -173148351 + AT_rich Low_complexity Low_complexity 1 49 0 7 768 251 304 29 0 chr1 24047142 24047211 -173148221 + ID SINE ID 1 71 -153 7 768 629 302 98 43 chr1 24047678 24047794 -173147638 - B4A SINE B4 -44 248 128 8 768 2038 131 32 0 chr1 24047794 24048107 -173147325 + ORR1A3 LTR MaLR 4 326 0 8 768 629 302 98 43 chr1 24048107 24048225 -173147207 - B4A SINE B4 -165 127 1 8 768 379 99 49 0 chr1 24049122 24049203 -173146229 + (CACAC)n Simple_repeat Simple_repeat 3 87 0 8 768 217 380 68 25 chr1 24049225 24049387 -173146045 + L4 LINE RTE 1352 1520 -509 8 768 300 295 69 15 chr1 24049640 24049771 -173145661 + L1M5 LINE L1 3309 3446 -2700 8 768 337 339 75 34 chr1 24049771 24050037 -173145395 + L1MC4 LINE L1 7457 7733 -309 8 768 24 0 0 0 chr1 24050565 24050589 -173144843 + AT_rich Low_complexity Low_complexity 1 24 0 8 768 1086 109 0 0 chr1 24051335 24051482 -173143950 + B1_Mus1 SINE Alu 1 147 -1 8 768 438 234 0 0 chr1 24052039 24052146 -173143286 + (CA)n Simple_repeat Simple_repeat 2 108 0 8 768 705 305 29 5 chr1 24052157 24052361 -173143071 - B3 SINE B2 -6 210 2 8 768 21 36 0 0 chr1 24053561 24053589 -173141843 + AT_rich Low_complexity Low_complexity 1 28 0 9 768 506 357 15 0 chr1 24054010 24054206 -173141226 - B4A SINE B4 -85 207 9 9 768 21 36 0 0 chr1 24054284 24054312 -173141120 + AT_rich Low_complexity Low_complexity 1 28 0 9 768 785 210 0 7 chr1 24054868 24055012 -173140420 - B1_Mm SINE Alu 0 147 5 9 768 180 0 0 0 chr1 24055065 24055085 -173140347 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 768 380 224 0 0 chr1 24055363 24055430 -173140002 + B1_Mur3 SINE Alu 2 68 -81 9 768 186 320 50 30 chr1 24056283 24056383 -173139049 - MIR3 SINE MIR -15 193 92 9 768 25 31 0 0 chr1 24056622 24056654 -173138778 + AT_rich Low_complexity Low_complexity 1 32 0 9 768 21 71 0 0 chr1 24057200 24057242 -173138190 + AT_rich Low_complexity Low_complexity 1 42 0 9 768 1140 55 7 7 chr1 24057383 24057530 -173137902 + B1_Mus1 SINE Alu 2 148 0 9 768 225 273 15 15 chr1 24057958 24058025 -173137407 - BC1_Mm scRNA scRNA -62 90 24 1 768 1050 77 0 34 chr1 24058284 24058432 -173137000 - B1_Mus1 SINE Alu -5 143 1 1 768 914 240 34 5 chr1 24058884 24059093 -173136339 - B3 SINE B2 0 216 2 1 768 904 176 7 0 chr1 24059391 24059539 -173135893 + B1_Mur4 SINE Alu 1 149 -1 1 768 232 315 0 0 chr1 24061141 24061195 -173134237 - ID SINE ID -142 82 29 1 768 2244 56 107 7 chr1 24061278 24061586 -173133846 - Lx3_Mus LINE L1 -8 7001 6663 1 768 577 309 20 44 chr1 24061868 24062071 -173133361 - B3A SINE B2 0 198 1 1 768 22 80 0 0 chr1 24062108 24062158 -173133274 + AT_rich Low_complexity Low_complexity 1 50 0 1 768 252 0 0 0 chr1 24063237 24063265 -173132167 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 768 318 376 39 28 chr1 24064896 24065074 -173130358 + MER77 LTR ERVL 301 480 -127 1 768 198 71 0 0 chr1 24065194 24065222 -173130210 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 768 615 242 38 44 chr1 24065548 24065708 -173129724 + RSINE1 SINE B4 3 161 -4 1 768 657 310 26 58 chr1 24066003 24066229 -173129203 - B4A SINE B4 -3 289 71 1 768 35 24 0 0 chr1 24066237 24066279 -173129153 + AT_rich Low_complexity Low_complexity 1 42 0 1 768 348 164 0 0 chr1 24066283 24066338 -173129094 - B2_Mm2 SINE B2 -94 101 47 1 768 1097 119 11 68 chr1 24066383 24066538 -173128894 - B2_Mm1a SINE B2 -14 179 35 1 768 2951 61 19 35 chr1 24066538 24066962 -173128470 - L1_Mus3 LINE L1 0 6638 6222 1 768 1097 119 11 68 chr1 24066962 24066996 -173128436 - B2_Mm1a SINE B2 -159 34 1 1 768 967 75 0 15 chr1 24067281 24067416 -173128016 - B1_Mus1 SINE Alu 0 148 16 1 768 366 263 46 99 chr1 24067286 24067438 -173127994 - B4A SINE B4 -68 224 81 1 768 406 350 90 24 chr1 24067440 24067853 -173127579 + L2 LINE L2 729 1168 -2251 1 768 579 155 0 0 chr1 24067997 24068100 -173127332 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 768 268 343 109 48 chr1 24068212 24068506 -173126926 + L2 LINE L2 1257 1568 -1851 1 768 257 236 40 27 chr1 24068622 24068696 -173126736 + MLT1F2 LTR MaLR 1 75 -579 1 768 423 202 194 0 chr1 24068771 24068900 -173126532 + MLT1F2 LTR MaLR 405 558 -2 1 768 354 286 110 7 chr1 24068924 24069079 -173126353 + L2 LINE L2 1982 2152 -1267 1 768 389 310 168 88 chr1 24069080 24069490 -173125942 - LTR40b LTR ERVL -19 443 1 1 768 655 337 51 92 chr1 24069569 24069863 -173125569 + B4A SINE B4 1 282 -10 1 768 21 89 0 0 chr1 24070203 24070259 -173125173 + AT_rich Low_complexity Low_complexity 1 56 0 1 768 261 0 0 0 chr1 24071887 24071916 -173123516 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 768 195 69 0 0 chr1 24072383 24072412 -173123020 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1 768 1190 68 0 0 chr1 24072414 24072561 -173122871 - B1_Mus2 SINE Alu 0 147 1 1 768 755 130 129 8 chr1 24073022 24073154 -173122278 + B1_Mus1 SINE Alu 1 148 0 1 768 311 193 43 9 chr1 24073172 24073339 -173122093 + (TA)n Simple_repeat Simple_repeat 1 172 0 1 768 220 77 103 0 chr1 24073775 24073814 -173121618 - B3 SINE B2 -173 43 1 1 768 289 355 0 0 chr1 24074382 24074458 -173120974 + PB1D10 SINE Alu 1 76 -41 1 768 306 0 0 0 chr1 24075207 24075241 -173120191 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 768 392 237 67 67 chr1 24075325 24075429 -173120003 + PB1D9 SINE Alu 16 119 -1 1 768 2222 32 67 0 chr1 24075461 24075744 -173119688 + IAPLTR2_Mm LTR ERVK 1 302 -173 1 768 365 285 75 105 chr1 24075879 24076173 -173119259 + Lx8 LINE L1 7173 7457 -16 1 768 33 43 0 0 chr1 24076304 24076351 -173119081 + AT_rich Low_complexity Low_complexity 1 47 0 1 768 237 152 0 21 chr1 24076403 24076450 -173118982 + B1F2 SINE Alu 13 58 -91 1 768 307 298 0 17 chr1 24076451 24076567 -173118865 + GA-rich Low_complexity Low_complexity 4 117 0 1 768 466 145 13 13 chr1 24076576 24076653 -173118779 + B1_Mur2 SINE Alu 42 118 -31 1 768 449 259 158 62 chr1 24077313 24077929 -173117503 + L1MA7 LINE L1 5451 6133 -170 1 768 234 324 85 9 chr1 24078161 24078267 -173117165 - MER58B DNA MER1_type -26 315 202 1 768 26 30 0 0 chr1 24080173 24080206 -173115226 + AT_rich Low_complexity Low_complexity 1 33 0 1 768 510 282 25 63 chr1 24080847 24081006 -173114426 + RSINE1 SINE B4 13 165 0 1 768 444 175 0 0 chr1 24081029 24081126 -173114306 + A-rich Low_complexity Low_complexity 1 97 0 1 768 392 0 21 0 chr1 24081171 24081219 -173114213 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 768 351 44 0 0 chr1 24081219 24081263 -173114169 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 768 293 320 136 92 chr1 24081357 24081608 -173113824 + MLT1H LTR MaLR 280 541 -8 1 768 473 294 223 30 chr1 24081617 24081985 -173113447 + MLT1H-int LTR MaLR 2 440 -969 1 768 7633 76 3 22 chr1 24082037 24083254 -173112178 - L1Md_T LINE L1 -5380 1347 50 1 768 32811 40 0 0 chr1 24083252 24087474 -173107958 + L1Md_T LINE L1 1368 5589 -297 1 768 8524 31 0 0 chr1 24087474 24088470 -173106962 + L1Md_T LINE L1 5590 6585 0 1 768 228 271 80 137 chr1 24088518 24088693 -173106739 + MLT1H-int LTR MaLR 539 703 -706 1 768 295 260 160 30 chr1 24089483 24089614 -173105818 - B1F SINE Alu -1 148 1 1 768 1213 217 94 40 chr1 24089656 24090007 -173105425 + ORR1D1 LTR MaLR 1 370 -4 1 768 2694 149 74 15 chr1 24090075 24090605 -173104827 + RLTR31_Mm LTR ERVK 1 561 0 1 768 560 202 0 60 chr1 24090732 24090848 -173104584 + PB1D10 SINE Alu 9 117 0 1 768 726 204 7 0 chr1 24091127 24091264 -173104168 + B3A SINE B2 4 141 -57 1 768 321 93 0 0 chr1 24091270 24091324 -173104108 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 768 252 0 0 0 chr1 24091330 24091358 -173104074 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1 768 324 0 0 0 chr1 24092733 24092769 -173102663 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 768 481 322 122 20 chr1 24092869 24093116 -173102316 + LTR40a LTR ERVL 1 272 -247 1 768 370 291 27 41 chr1 24093139 24093286 -173102146 + LTR40a LTR ERVL 373 517 -2 1 768 237 167 0 0 chr1 24093849 24093903 -173101529 + T-rich Low_complexity Low_complexity 1 54 0 1 768 1130 75 7 0 chr1 24093907 24094053 -173101379 - B1_Mus1 SINE Alu 0 148 2 1 768 247 369 95 39 chr1 24096580 24096811 -173098621 + MLT1J-int LTR MaLR 804 1047 -340 1 768 316 309 189 9 chr1 24097476 24097698 -173097734 + L2a LINE L2 2911 3172 -254 1 768 28 61 0 0 chr1 24097992 24098041 -173097391 + AT_rich Low_complexity Low_complexity 1 49 0 1 768 1028 88 0 63 chr1 24099197 24099355 -173096077 - B1_Mus1 SINE Alu 0 148 1 1 768 279 252 243 0 chr1 24099455 24099566 -173095866 + Charlie5 DNA MER1_type 62 199 -2425 1 768 317 215 76 76 chr1 24099568 24099592 -173095840 + MT2B LTR ERVL 146 193 -408 1 768 411 203 14 0 chr1 24099592 24099661 -173095771 + B1_Mus2 SINE Alu 3 72 -75 1 768 1398 170 96 32 chr1 24099659 24099939 -173095493 - MTC LTR MaLR -123 298 1 1 768 317 215 76 76 chr1 24099661 24099699 -173095733 + MT2B LTR ERVL 194 276 -325 1 768 459 269 117 28 chr1 24099944 24100110 -173095322 - B3A SINE B2 -7 186 5 1 768 234 0 0 0 chr1 24100195 24100221 -173095211 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 768 1016 73 0 21 chr1 24100221 24100361 -173095071 - B1_Mm SINE Alu -9 138 2 1 768 2726 50 6 16 chr1 24102453 24102819 -173092613 + L1_Mus1 LINE L1 6205 6566 -1 1 768 23 54 0 0 chr1 24106697 24106734 -173088698 + GC_rich Low_complexity Low_complexity 1 37 0 1 768 21 0 0 0 chr1 24107158 24107179 -173088253 + GC_rich Low_complexity Low_complexity 1 21 0 1 768 2438 124 188 30 chr1 24107770 24108308 -173087124 - Lx4A LINE L1 -7 7051 6429 1 768 240 250 156 13 chr1 24110939 24111016 -173084416 - 5S rRNA rRNA -33 88 1 1 768 732 200 0 0 chr1 24111264 24111444 -173083988 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 768 630 237 17 0 chr1 24111453 24111571 -173083861 + B1_Mur1 SINE Alu 13 132 -17 1 768 620 226 90 124 chr1 24111750 24111877 -173083555 + L1MA9 LINE L1 6048 6162 -150 1 768 4674 127 61 1 chr1 24111877 24112577 -173082855 - Lx LINE L1 -2 6652 5911 1 768 620 226 90 124 chr1 24112577 24112716 -173082716 + L1MA9 LINE L1 6163 6305 -7 1 768 232 274 0 0 chr1 24113070 24113121 -173082311 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 1 768 806 205 73 49 chr1 24113462 24113667 -173081765 + B3 SINE B2 1 210 -6 1 768 382 257 110 14 chr1 24113734 24113880 -173081552 - L1MA9 LINE L1 0 6312 6153 1 768 216 0 0 0 chr1 24115617 24115641 -173079791 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 768 21 71 0 0 chr1 24115682 24115724 -173079708 + AT_rich Low_complexity Low_complexity 1 42 0 1 768 621 234 65 38 chr1 24115752 24115902 -173079530 + ID_B1 SINE B4 83 233 -59 1 768 246 116 0 0 chr1 24116072 24116115 -173079317 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 768 471 35 0 0 chr1 24116794 24116851 -173078581 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 11 700 246 35 7 chr1 24117245 24117388 -173078044 - B1_Mus2 SINE Alu 0 147 1 1 769 25 31 0 0 chr1 24117780 24117812 -173077620 + AT_rich Low_complexity Low_complexity 1 32 0 1 769 276 100 0 0 chr1 24117828 24117868 -173077564 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 769 186 43 0 0 chr1 24117869 24117892 -173077540 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 769 215 106 43 0 chr1 24118141 24118188 -173077244 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 1 769 1237 55 0 14 chr1 24118188 24118335 -173077097 - B1_Mm SINE Alu 0 147 3 1 769 441 0 0 0 chr1 24118480 24118529 -173076903 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 769 828 201 114 79 chr1 24118677 24118904 -173076528 - RLTR42 LTR ERVK -4 235 1 1 769 275 241 127 18 chr1 24118928 24119038 -173076394 - RLTR42-int LTR ERVK -1080 4442 4321 1 769 2010 114 81 107 chr1 24119202 24119623 -173075809 + RMER17C LTR ERVK 1 410 0 1 769 197 128 21 0 chr1 24119629 24119676 -173075756 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 1 769 192 270 0 0 chr1 24119681 24119718 -173075714 - MIRm SINE MIR -41 235 199 1 769 592 221 8 235 chr1 24119746 24120001 -173075431 - RLTR42-int LTR ERVK -3653 1869 1673 1 769 1887 156 129 35 chr1 24120165 24120537 -173074895 + MTB_Mm LTR MaLR 1 407 0 1 769 1270 41 7 0 chr1 24120943 24121089 -173074343 + B1_Mus2 SINE Alu 1 147 0 2 769 6014 110 44 8 chr1 24121389 24122249 -173073183 + Lx2B LINE L1 6105 6995 -5 2 769 300 229 56 28 chr1 24122632 24122704 -173072728 - ID4_ SINE ID -2 81 8 2 769 2555 273 56 85 chr1 24123392 24123556 -173071876 - Lx9 LINE L1 -174 7470 7308 2 769 1252 146 111 0 chr1 24123556 24123755 -173071677 + URR1B DNA MER1_type 5 225 0 2 769 2555 273 56 85 chr1 24123755 24124137 -173071295 - Lx9 LINE L1 -337 7307 6971 2 769 1303 78 49 22 chr1 24124137 24124321 -173071111 + B2_Mm2 SINE B2 2 190 -5 2 769 2555 273 56 85 chr1 24124321 24124391 -173071041 - Lx9 LINE L1 -674 6970 6902 2 769 483 33 0 0 chr1 24124391 24124452 -173070980 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 769 2555 282 58 82 chr1 24124452 24125139 -173070293 - Lx9 LINE L1 -743 6901 6030 2 769 400 284 83 0 chr1 24125165 24125274 -173070158 - Lx9 LINE L1 -1677 5967 5850 2 769 665 219 87 22 chr1 24125318 24125521 -173069911 + L1MA5 LINE L1 5639 5864 -436 2 769 2626 103 3 75 chr1 24125648 24126035 -173069397 - RLTR10D LTR ERVK 0 359 1 2 769 785 290 120 12 chr1 24126055 24126313 -173069119 - B4 SINE B4 0 292 7 2 769 534 310 5 60 chr1 24126468 24126517 -173068915 + ID_B1 SINE B4 44 218 -6 2 769 901 126 15 7 chr1 24126517 24126653 -173068779 + B1_Mus2 SINE Alu 5 141 -6 2 769 504 223 66 8 chr1 24126689 24126811 -173068621 + B3 SINE B2 2 130 -86 2 769 525 264 60 69 chr1 24127580 24127796 -173067636 - B3 SINE B2 -1 215 2 2 769 228 217 213 21 chr1 24127924 24128018 -173067414 - L1ME3B LINE L1 -171 6069 5958 2 769 252 256 12 47 chr1 24128032 24128118 -173067314 + CT-rich Low_complexity Low_complexity 2 84 0 2 769 255 279 14 29 chr1 24128130 24128200 -173067232 - ID4_ SINE ID -13 70 2 2 769 180 0 0 0 chr1 24128207 24128227 -173067205 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 769 226 149 0 78 chr1 24128593 24128644 -173066788 + B1_Mm SINE Alu 91 137 -10 2 769 335 41 0 20 chr1 24128644 24128694 -173066738 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 769 181 322 57 48 chr1 24128925 24129049 -173066383 + MIRm SINE MIR 60 184 -92 2 769 655 148 0 0 chr1 24130144 24130259 -173065173 + ORR1D1 LTR MaLR 1 115 -259 2 769 300 252 28 9 chr1 24130396 24130504 -173064928 + Lx6 LINE L1 7324 7433 -27 2 769 384 330 105 49 chr1 24130668 24130974 -173064458 - MLT2D LTR ERVL -89 325 3 2 769 430 403 23 9 chr1 24131535 24131753 -173063679 + MamSINE1 SINE tRNA 44 264 -26 2 769 201 138 0 0 chr1 24133454 24133483 -173061949 + (TTAGGG)n Simple_repeat Simple_repeat 6 34 0 2 769 351 0 0 0 chr1 24133558 24133597 -173061835 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 769 442 295 32 28 chr1 24133659 24133875 -173061557 - RLTR15 LTR ERVK -81 278 62 2 769 270 264 245 21 chr1 24133974 24134117 -173061315 - B3A SINE B2 -22 176 2 2 769 198 0 0 0 chr1 24134367 24134389 -173061043 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 769 23 33 0 0 chr1 24134606 24134636 -173060796 + AT_rich Low_complexity Low_complexity 1 30 0 2 769 292 316 0 21 chr1 24134640 24134737 -173060695 - MLT1A0 LTR MaLR -2 363 269 2 769 412 265 63 68 chr1 24134756 24135008 -173060424 - MLT1A0 LTR MaLR -162 246 1 2 769 216 0 0 0 chr1 24135042 24135066 -173060366 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 769 443 18 0 18 chr1 24135779 24135836 -173059596 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 2 769 1440 63 29 0 chr1 24135836 24136011 -173059421 - B2_Mm2 SINE B2 -15 180 1 2 769 27 62 0 0 chr1 24136146 24136194 -173059238 + AT_rich Low_complexity Low_complexity 1 48 0 2 769 826 221 7 0 chr1 24136221 24136361 -173059071 - B1_Mur1 SINE Alu -8 141 1 2 769 366 320 18 93 chr1 24136380 24136551 -173058881 - B3A SINE B2 -17 199 35 2 769 362 223 137 3 chr1 24136589 24136820 -173058612 + L1MB5 LINE L1 5188 5444 -740 2 769 2407 157 121 17 chr1 24137009 24137487 -173057945 + RLTR11A LTR ERVK 1 528 0 2 769 778 210 14 14 chr1 24137840 24137985 -173057447 + B1_Mur1 SINE Alu 5 149 0 2 769 234 0 0 0 chr1 24138006 24138032 -173057400 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 2 769 3739 177 77 16 chr1 24138417 24139182 -173056250 + RLTR25B LTR ERVK 51 862 -166 2 769 2713 126 24 7 chr1 24139249 24139664 -173055768 - BGLII_Mus LTR ERVK 0 422 1 2 769 365 246 308 31 chr1 24139679 24139906 -173055526 + RLTR25B LTR ERVK 739 1028 0 2 769 798 259 62 4 chr1 24139924 24140164 -173055268 + L1MB5 LINE L1 5694 5947 -227 2 769 234 0 0 0 chr1 24140208 24140234 -173055198 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 769 1759 124 84 19 chr1 24141533 24141854 -173053578 - Lx9 LINE L1 -1 7643 7302 2 769 234 261 34 0 chr1 24142847 24142935 -173052497 + L1M2 LINE L1 5361 5451 -849 2 769 312 27 0 0 chr1 24143705 24143742 -173051690 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 769 468 99 0 0 chr1 24145132 24145203 -173050229 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 769 292 188 62 15 chr1 24145477 24145542 -173049890 + MTD LTR MaLR 196 263 -156 2 769 477 275 50 0 chr1 24145515 24145635 -173049797 - B1_Mm SINE Alu -16 131 6 2 769 27 0 0 0 chr1 24145966 24145993 -173049439 + AT_rich Low_complexity Low_complexity 1 27 0 2 769 443 132 0 42 chr1 24146057 24146152 -173049280 - Lx LINE L1 -5 7053 6963 2 769 813 137 14 7 chr1 24147430 24147570 -173047862 - Lx LINE L1 0 6654 6514 2 769 214 299 0 28 chr1 24148004 24148053 -173047379 + A-rich Low_complexity Low_complexity 5 52 0 2 769 207 0 0 0 chr1 24148053 24148076 -173047356 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 769 214 299 0 28 chr1 24148076 24148167 -173047265 + A-rich Low_complexity Low_complexity 53 140 0 2 769 180 0 0 0 chr1 24148770 24148790 -173046642 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 769 477 288 44 64 chr1 24148984 24149188 -173046244 + ORR1E LTR MaLR 1 200 -159 2 769 302 64 43 0 chr1 24149203 24149250 -173046182 + RMER19B LTR ERVK 854 902 0 2 769 965 272 34 4 chr1 24149250 24149482 -173045950 + MTE-int LTR MaLR 1077 1315 -265 2 769 218 261 108 0 chr1 24149637 24149702 -173045730 - BC1_Mm scRNA scRNA -64 88 17 2 769 331 323 7 65 chr1 24149750 24149889 -173045543 - B1F SINE Alu -8 141 11 2 769 636 285 69 9 chr1 24149951 24150167 -173045265 + Tigger1 DNA MER2_type 2002 2230 -188 2 769 339 280 0 13 chr1 24150192 24150268 -173045164 + 7SK RNA RNA 20 94 -237 2 769 1246 234 33 87 chr1 24150270 24150359 -173045073 + ORR1D2 LTR MaLR 1 84 -286 2 769 426 39 0 0 chr1 24150359 24150411 -173045021 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 769 1246 234 33 87 chr1 24150411 24150653 -173044779 + ORR1D2 LTR MaLR 85 314 -56 2 769 251 181 27 27 chr1 24150657 24150731 -173044701 + A-rich Low_complexity Low_complexity 2 75 0 2 769 185 0 40 0 chr1 24151418 24151443 -173043989 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2 769 252 0 0 0 chr1 24151443 24151471 -173043961 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 769 620 250 121 11 chr1 24151852 24152042 -173043390 - B3 SINE B2 -5 211 1 2 769 473 0 0 17 chr1 24152058 24152116 -173043316 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2 769 513 0 0 0 chr1 24153038 24153095 -173042337 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2 769 2573 73 0 15 chr1 24153160 24153495 -173041937 + L1Md_F2 LINE L1 6253 6582 0 2 769 6223 100 12 1 chr1 24153522 24154341 -173041091 - Lx LINE L1 0 6654 5827 2 769 32131 110 28 15 chr1 24154363 24160559 -173034873 - L1_Mus2 LINE L1 -1 6565 278 2 769 1939 65 0 8 chr1 24160588 24160643 -173034789 - Lx LINE L1 -812 5842 5789 2 769 2701 68 5 53 chr1 24160643 24161017 -173034415 - L1Md_F2 LINE L1 -2 6580 6225 2 769 1939 65 0 8 chr1 24161017 24161207 -173034225 - Lx LINE L1 -866 5788 5599 2 769 207 0 0 0 chr1 24161339 24161362 -173034070 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 769 183 170 0 0 chr1 24162274 24162321 -173033111 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 769 933 263 32 28 chr1 24162324 24162574 -173032858 - B4A SINE B4 0 292 42 2 769 1202 68 7 13 chr1 24162721 24162870 -173032562 - B1_Mus1 SINE Alu 0 148 1 2 769 290 122 0 0 chr1 24162905 24162954 -173032478 - RLTR21 LTR ERVK -512 1060 1012 2 769 4032 102 9 6 chr1 24162954 24163504 -173031928 - Lx LINE L1 0 6654 6103 2 769 421 303 102 5 chr1 24163867 24164053 -173031379 - MER3 DNA MER1_type -4 205 2 2 769 33 25 0 0 chr1 24164194 24164234 -173031198 + AT_rich Low_complexity Low_complexity 1 40 0 2 769 778 199 53 27 chr1 24165037 24165228 -173030204 - MTD LTR MaLR -31 388 181 2 769 2715 133 133 18 chr1 24165245 24165749 -173029683 - Lx4A LINE L1 0 7058 6497 2 769 917 200 25 45 chr1 24165767 24165966 -173029466 - MTD LTR MaLR -219 200 6 2 769 832 312 103 26 chr1 24166302 24166730 -173028702 + LTR40a LTR ERVL 5 465 -54 2 769 303 191 0 0 chr1 24167560 24167623 -173027809 + (CAT)n Simple_repeat Simple_repeat 2 64 0 2 769 234 0 0 0 chr1 24167625 24167651 -173027781 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 769 890 109 8 0 chr1 24168860 24168988 -173026444 - B1_Mur3 SINE Alu -15 134 6 2 769 21 0 0 0 chr1 24169804 24169825 -173025607 + AT_rich Low_complexity Low_complexity 1 21 0 2 769 203 392 49 7 chr1 24169968 24170112 -173025320 + MIRb SINE MIR 28 177 -91 2 769 1417 161 4 30 chr1 24170274 24170505 -173024927 - URR1B DNA MER1_type 0 225 1 2 769 1819 205 45 92 chr1 24171091 24171602 -173023830 + RLTR11A LTR ERVK 19 505 -23 2 769 4016 145 0 0 chr1 24173737 24174364 -173021068 - ORR1B1-int LTR MaLR -1336 627 1 2 769 1934 155 56 15 chr1 24174364 24174704 -173020728 - ORR1B1 LTR MaLR 0 394 41 2 769 265 245 0 36 chr1 24175570 24175625 -173019807 - Lx8 LINE L1 -195 7278 7226 2 769 22 0 0 0 chr1 24175840 24175862 -173019570 + AT_rich Low_complexity Low_complexity 1 22 0 2 769 201 256 69 58 chr1 24176014 24176101 -173019331 + MIRb SINE MIR 63 150 -118 2 769 341 203 14 99 chr1 24176909 24177051 -173018381 - Lx3A LINE L1 0 6981 6852 3 769 527 156 0 0 chr1 24177038 24177115 -173018317 - L1_Mm LINE L1 -401 5482 5406 3 769 180 77 0 0 chr1 24178073 24178099 -173017333 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 3 769 26 30 0 0 chr1 24178747 24178780 -173016652 + AT_rich Low_complexity Low_complexity 1 33 0 3 769 195 162 0 0 chr1 24178800 24178837 -173016595 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 3 769 2160 188 77 2 chr1 24178837 24179242 -173016190 - Lx5 LINE L1 0 7050 6616 3 769 21 71 0 0 chr1 24179342 24179384 -173016048 + AT_rich Low_complexity Low_complexity 1 42 0 3 769 364 280 182 0 chr1 24179495 24179638 -173015794 + MER5A DNA MER1_type 21 189 0 3 769 264 301 73 6 chr1 24180575 24180739 -173014693 + MER112 DNA MER1_type 6 180 -81 3 769 187 357 60 90 chr1 24181037 24181271 -173014161 + L2a LINE L2 3070 3296 -79 3 769 207 341 62 8 chr1 24181546 24181676 -173013756 + L2a LINE L2 3289 3425 -1 3 769 786 249 5 45 chr1 24182019 24182221 -173013211 + B3A SINE B2 5 198 0 3 769 377 312 73 43 chr1 24183132 24183296 -173012136 + B4A SINE B4 106 274 -18 3 769 341 319 42 21 chr1 24184010 24184154 -173011278 - MIRb SINE MIR -70 198 52 3 769 201 133 0 0 chr1 24185425 24185455 -173009977 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 3 769 342 0 0 0 chr1 24185543 24185581 -173009851 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 769 27 0 0 0 chr1 24186981 24187008 -173008424 + AT_rich Low_complexity Low_complexity 1 27 0 3 769 306 0 0 0 chr1 24187120 24187154 -173008278 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 769 2508 289 74 22 chr1 24187166 24188069 -173007363 - Lx9 LINE L1 -242 7402 6453 3 769 2973 97 26 47 chr1 24188122 24188176 -173007256 - Lx4A LINE L1 -1011 6047 6012 3 769 1483 67 0 11 chr1 24188176 24188358 -173007074 - B2_Mm2 SINE B2 -14 181 2 3 769 2973 109 28 46 chr1 24188358 24188798 -173006634 - Lx4A LINE L1 -1047 6011 5592 3 769 413 262 128 82 chr1 24188897 24189250 -173006182 - Lx9 LINE L1 -1541 6103 5735 3 769 546 279 99 47 chr1 24189199 24189391 -173006041 + Lx9 LINE L1 5531 5732 -115 3 769 180 0 0 0 chr1 24189434 24189454 -173005978 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 3 769 270 69 17 33 chr1 24189696 24189756 -173005676 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 769 1224 56 14 0 chr1 24189759 24189901 -173005531 - B1_Mus1 SINE Alu 0 148 5 3 769 714 251 32 32 chr1 24193204 24193393 -173002039 - B3A SINE B2 -3 195 7 3 769 1738 31 5 0 chr1 24194420 24194612 -173000820 - B2_Mm1t SINE B2 0 193 1 3 769 252 0 0 0 chr1 24195001 24195029 -173000403 + (T)n Simple_repeat Simple_repeat 1 28 0 3 769 1235 61 0 0 chr1 24195029 24195176 -173000256 - B1_Mus2 SINE Alu 0 147 1 3 769 203 296 152 41 chr1 24196447 24196644 -172998788 - L2a LINE L2 -274 3152 2934 3 769 188 299 29 29 chr1 24196648 24196717 -172998715 - L2a LINE L2 -988 2431 2363 3 769 314 284 181 19 chr1 24196810 24197076 -172998356 - L2a LINE L2 -1276 2143 1835 3 769 3508 36 15 0 chr1 24199112 24199502 -172995930 + MTA_Mm LTR MaLR 1 396 0 3 769 219 69 0 0 chr1 24201454 24201483 -172993949 + (CAA)n Simple_repeat Simple_repeat 1 29 0 3 769 360 43 0 0 chr1 24204344 24204390 -172991042 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 769 518 63 13 0 chr1 24204390 24204469 -172990963 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 769 198 186 28 28 chr1 24204512 24204584 -172990848 + GA-rich Low_complexity Low_complexity 4 75 0 3 769 567 265 127 21 chr1 24204776 24204965 -172990467 + B3 SINE B2 7 215 -1 3 769 329 250 130 0 chr1 24206024 24206116 -172989316 - PB1D10 SINE Alu -1 116 13 3 769 21 36 0 0 chr1 24208317 24208345 -172987087 + AT_rich Low_complexity Low_complexity 1 28 0 3 769 596 301 0 0 chr1 24209413 24209549 -172985883 - B1F SINE Alu -13 136 1 3 769 420 37 0 0 chr1 24209744 24209798 -172985634 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 769 2851 121 2 22 chr1 24210046 24210461 -172984971 + MTB_Mm LTR MaLR 1 407 0 3 769 618 289 34 69 chr1 24210795 24210999 -172984433 - B3A SINE B2 0 198 2 3 769 8047 55 10 0 chr1 24212429 24213578 -172981854 - L1_Mus2 LINE L1 0 6566 5407 3 769 756 107 0 0 chr1 24214429 24214541 -172980891 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 3 769 262 258 99 22 chr1 24215982 24216073 -172979359 + RLTR20D LTR ERVK 171 268 -300 3 769 195 42 0 0 chr1 24216422 24216446 -172978986 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 769 294 276 13 13 chr1 24218414 24218491 -172976941 - L2a LINE L2 -8 3418 3342 3 769 507 231 125 15 chr1 24219476 24219612 -172975820 + B3 SINE B2 1 151 -65 3 769 527 287 34 34 chr1 24219924 24220072 -172975360 + RSINE1 SINE B4 1 148 -17 3 769 39 22 0 0 chr1 24220241 24220287 -172975145 + AT_rich Low_complexity Low_complexity 1 46 0 3 769 240 59 0 0 chr1 24220467 24220501 -172974931 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 769 748 188 130 24 chr1 24222163 24222332 -172973100 - B3 SINE B2 -1 215 29 3 769 3032 38 3 0 chr1 24222332 24222698 -172972734 + L1Md_T LINE L1 6216 6582 0 3 769 279 156 0 0 chr1 24222727 24222772 -172972660 - B3 SINE B2 -171 45 1 3 769 189 0 0 0 chr1 24226691 24226712 -172968720 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 769 925 172 112 10 chr1 24226719 24226924 -172968508 + URR1A DNA MER1_type 1 226 0 3 769 445 269 32 0 chr1 24227795 24227888 -172967544 - PB1D7 SINE Alu -10 110 15 3 769 345 298 30 8 chr1 24227997 24228129 -172967303 + B1F1 SINE Alu 1 135 -14 3 769 226 324 0 29 chr1 24228154 24228224 -172967208 + ID4_ SINE ID 3 70 -13 3 769 279 200 0 44 chr1 24228254 24228322 -172967110 + B3 SINE B2 145 209 -7 3 769 29 60 0 0 chr1 24229428 24229478 -172965954 + AT_rich Low_complexity Low_complexity 1 50 0 3 769 727 72 0 1 chr1 24229613 24229722 -172965710 + B2_Mm2 SINE B2 2 109 -107 3 769 301 250 254 66 chr1 24230882 24231126 -172964306 + B4 SINE B4 1 290 -2 3 769 494 307 55 23 chr1 24231794 24232051 -172963381 - L1MB8 LINE L1 -11 6167 5903 3 769 327 235 207 9 chr1 24232110 24232226 -172963206 - L1MB8 LINE L1 -403 5771 5633 3 769 1136 60 169 0 chr1 24232406 24232572 -172962860 - B2_Mm2 SINE B2 -1 194 1 3 769 468 35 0 0 chr1 24234502 24234560 -172960872 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 769 306 0 0 0 chr1 24235240 24235274 -172960158 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 769 247 360 59 28 chr1 24235380 24235669 -172959763 - Lx8 LINE L1 -20 7453 7156 3 769 468 284 75 84 chr1 24243075 24243349 -172952083 + B4 SINE B4 3 273 -19 3 769 800 176 21 0 chr1 24243350 24243492 -172951940 + URR1A DNA MER1_type 77 221 -5 3 769 378 317 59 37 chr1 24243351 24243538 -172951894 - CYRA11_Mm Unknown Y-chromosome -297 320 130 3 769 213 240 77 39 chr1 24243478 24243556 -172951876 + RSINE1 SINE B4 85 165 0 3 769 23 0 0 0 chr1 24243738 24243761 -172951671 + AT_rich Low_complexity Low_complexity 1 23 0 3 769 435 247 129 65 chr1 24246253 24246439 -172948993 - B3A SINE B2 0 198 1 3 769 25 31 0 0 chr1 24247180 24247212 -172948220 + AT_rich Low_complexity Low_complexity 1 32 0 3 769 381 301 94 20 chr1 24247626 24247775 -172947657 - MER5B DNA MER1_type -8 170 11 3 770 270 116 0 0 chr1 24248980 24249023 -172946409 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 770 21 36 0 0 chr1 24249182 24249210 -172946222 + AT_rich Low_complexity Low_complexity 1 28 0 3 770 584 268 83 0 chr1 24249814 24249982 -172945450 + B3A SINE B2 1 182 -16 3 770 1197 36 0 0 chr1 24250540 24250679 -172944753 + B1_Mus1 SINE Alu 1 139 -9 3 770 557 64 13 0 chr1 24250679 24250757 -172944675 + (CAAGA)n Simple_repeat Simple_repeat 5 83 0 3 770 306 87 0 0 chr1 24251122 24251168 -172944264 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 770 226 0 59 0 chr1 24251347 24251381 -172944051 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 3 770 359 341 74 35 chr1 24253166 24253397 -172942035 + MIRb SINE MIR 21 260 -2 3 770 25 51 0 0 chr1 24253890 24253929 -172941503 + AT_rich Low_complexity Low_complexity 1 39 0 3 770 2453 46 0 3 chr1 24254045 24254351 -172941081 - L1Md_F2 LINE L1 0 6582 6278 3 770 556 250 106 126 chr1 24254509 24254857 -172940575 - Lx9 LINE L1 -296 7348 7008 3 770 640 323 80 13 chr1 24257802 24258028 -172937404 + Tigger5 DNA MER2_type 2 242 -2164 3 770 562 278 68 15 chr1 24258115 24258319 -172937113 - MER33 DNA MER1_type -112 212 15 3 770 189 0 0 0 chr1 24259018 24259039 -172936393 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 770 200 182 0 0 chr1 24259599 24259632 -172935800 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 770 353 343 0 87 chr1 24259643 24259793 -172935639 - Charlie4z DNA MER1_type -26 141 5 3 770 369 131 0 0 chr1 24260271 24260332 -172935100 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 770 253 278 121 35 chr1 24260392 24260668 -172934764 - L1M4 LINE L1 -776 5524 5225 3 770 1468 324 63 20 chr1 24260664 24261751 -172933681 + L1MA4 LINE L1 4167 5300 -843 3 770 206 174 22 0 chr1 24261752 24261798 -172933634 + (CAAT)n Simple_repeat Simple_repeat 1 47 0 3 770 862 265 175 12 chr1 24261942 24262370 -172933062 + Lx8 LINE L1 6976 7473 0 3 770 1232 269 46 15 chr1 24262379 24262774 -172932658 + L1MA4 LINE L1 5387 5792 -508 3 770 276 30 0 0 chr1 24262774 24262807 -172932625 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 770 1232 269 46 15 chr1 24262807 24262936 -172932496 + L1MA4 LINE L1 5793 5926 -374 3 770 447 214 135 13 chr1 24263183 24263339 -172932093 - L1M2 LINE L1 -3464 2679 2505 3 770 946 160 17 29 chr1 24263408 24263582 -172931850 - B2_Mm2 SINE B2 -22 173 2 3 770 1202 78 3 3 chr1 24263595 24263879 -172931553 + (TTC)n Simple_repeat Simple_repeat 1 284 0 3 770 953 67 0 0 chr1 24263879 24263998 -172931434 - B1_Mm SINE Alu -10 137 19 3 770 222 116 0 0 chr1 24269312 24269355 -172926077 + (A)n Simple_repeat Simple_repeat 1 43 0 3 770 24 32 0 0 chr1 24269404 24269435 -172925997 + AT_rich Low_complexity Low_complexity 1 31 0 4 770 426 222 0 11 chr1 24270294 24270385 -172925047 - BC1_Mm scRNA scRNA -62 90 1 4 770 24 0 0 0 chr1 24270805 24270829 -172924603 + AT_rich Low_complexity Low_complexity 1 24 0 4 770 28 0 0 0 chr1 24272113 24272141 -172923291 + AT_rich Low_complexity Low_complexity 1 28 0 4 770 208 180 0 20 chr1 24272327 24272378 -172923054 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 770 1062 118 0 0 chr1 24272805 24272975 -172922457 + (CA)n Simple_repeat Simple_repeat 1 170 0 4 770 209 210 0 16 chr1 24273271 24273334 -172922098 + CT-rich Low_complexity Low_complexity 3 64 0 4 770 205 256 0 24 chr1 24274347 24274431 -172921001 + CT-rich Low_complexity Low_complexity 1 82 0 4 770 1168 214 158 15 chr1 24275553 24275887 -172919545 - RMER4B LTR ERVK -33 552 171 4 770 586 302 56 50 chr1 24276340 24276717 -172918715 + Lx8 LINE L1 7095 7473 0 4 770 24 53 0 0 chr1 24277021 24277059 -172918373 + AT_rich Low_complexity Low_complexity 1 38 0 4 770 432 0 0 0 chr1 24277094 24277142 -172918290 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 770 297 75 0 0 chr1 24277475 24277515 -172917917 + (TTC)n Simple_repeat Simple_repeat 2 41 0 4 770 490 298 57 80 chr1 24278822 24279085 -172916347 + B4 SINE B4 9 265 -27 4 770 23 33 0 0 chr1 24279316 24279346 -172916086 + AT_rich Low_complexity Low_complexity 1 30 0 4 770 575 294 21 0 chr1 24280001 24280144 -172915288 + RSINE1 SINE B4 13 158 -7 4 770 22 35 0 0 chr1 24280763 24280792 -172914640 + AT_rich Low_complexity Low_complexity 1 29 0 4 770 347 308 68 12 chr1 24281213 24281374 -172914058 + HAL1 LINE L1 8 177 -2330 4 770 183 42 0 0 chr1 24281572 24281596 -172913836 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 4 770 270 311 133 22 chr1 24281597 24281778 -172913654 + HAL1 LINE L1 680 880 -1627 4 770 454 262 137 63 chr1 24283770 24283945 -172911487 - B3A SINE B2 -9 189 2 4 770 1050 128 14 0 chr1 24283998 24284146 -172911286 - B1_Mur4 SINE Alu 0 150 1 4 770 4030 117 4 56 chr1 24284386 24285552 -172909880 + L1Md_F LINE L1 572 1688 -2129 4 770 27 29 0 0 chr1 24285593 24285627 -172909805 + AT_rich Low_complexity Low_complexity 1 34 0 4 770 853 248 19 19 chr1 24285857 24286067 -172909365 + ID_B1 SINE B4 2 211 -13 4 770 249 309 20 78 chr1 24286284 24286386 -172909046 - MER58C DNA MER1_type -116 99 4 4 770 821 242 93 45 chr1 24288005 24288273 -172907159 + Lx7 LINE L1 7140 7420 -276 4 770 342 0 0 0 chr1 24288322 24288360 -172907072 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 770 414 0 0 0 chr1 24288360 24288405 -172907027 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 770 432 0 0 0 chr1 24288526 24288574 -172906858 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 770 324 157 0 0 chr1 24288853 24288904 -172906528 + B1F1 SINE Alu 11 61 -88 4 770 276 318 202 17 chr1 24288973 24289146 -172906286 + MIRb SINE MIR 32 236 -32 4 770 181 279 141 90 chr1 24289484 24289661 -172905771 + MIR SINE MIR 36 221 -41 4 770 561 288 0 0 chr1 24290443 24290561 -172904871 + RSINE1 SINE B4 32 149 -16 4 770 456 19 0 0 chr1 24290565 24290618 -172904814 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 770 232 288 0 55 chr1 24291215 24291380 -172904052 + (TGAG)n Simple_repeat Simple_repeat 2 157 0 4 770 517 330 51 42 chr1 24291380 24291595 -172903837 + MER20 DNA MER1_type 1 217 -2 4 770 207 0 0 0 chr1 24291958 24291981 -172903451 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 770 21 57 0 0 chr1 24292052 24292087 -172903345 + AT_rich Low_complexity Low_complexity 1 35 0 4 770 1178 257 210 22 chr1 24292409 24292871 -172902561 + RMER15 LTR ERVL 27 575 0 4 770 1047 198 26 108 chr1 24294118 24294469 -172900963 + RLTRETN_Mm LTR ERVK 1 322 0 4 770 1029 208 39 5 chr1 24294685 24294893 -172900539 + B3 SINE B2 2 216 0 4 770 501 17 0 0 chr1 24294949 24295007 -172900425 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 770 405 0 0 0 chr1 24295087 24295132 -172900300 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 770 5269 127 119 8 chr1 24295585 24296445 -172898987 + RMER17B LTR ERVK 1 955 -3 4 770 1241 235 161 58 chr1 24296983 24297363 -172898069 + MTD LTR MaLR 1 419 0 4 770 21 0 0 0 chr1 24297496 24297517 -172897915 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 394 272 57 122 chr1 24297575 24297839 -172897593 + ORR1E LTR MaLR 12 255 -115 4 770 304 385 19 13 chr1 24298562 24298720 -172896712 - MARNA DNA Mariner -149 437 279 4 770 270 164 0 0 chr1 24298911 24298966 -172896466 + T-rich Low_complexity Low_complexity 1 55 0 4 770 459 0 0 0 chr1 24300116 24300167 -172895265 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 770 391 186 62 92 chr1 24300857 24300991 -172894441 - B2_Mm2 SINE B2 -13 180 65 4 770 249 361 8 0 chr1 24301013 24301143 -172894289 + L1MA6 LINE L1 6119 6249 -51 4 770 288 423 22 11 chr1 24301418 24301693 -172893739 + L2b LINE L2 1043 1320 -2099 4 770 577 280 59 18 chr1 24301720 24301942 -172893490 + L2b LINE L2 2501 2731 -688 4 770 404 119 0 0 chr1 24302108 24302167 -172893265 - B1F2 SINE Alu -90 59 1 4 770 1463 258 55 12 chr1 24302448 24302848 -172892584 + MTD LTR MaLR 1 417 -2 4 770 225 286 119 56 chr1 24303000 24303126 -172892306 + L2b LINE L2 2971 3104 -271 4 770 681 170 9 0 chr1 24303266 24303372 -172892060 - B3 SINE B2 -108 108 2 4 770 1047 189 34 7 chr1 24304303 24304514 -172890918 + B3 SINE B2 2 213 -3 4 770 675 170 0 155 chr1 24304629 24304803 -172890629 + B1_Mur1 SINE Alu 2 148 -1 4 770 21 0 0 0 chr1 24306040 24306061 -172889371 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 268 214 107 0 chr1 24307306 24307390 -172888042 - Charlie12 DNA MER1_type -1892 981 889 4 770 652 309 37 0 chr1 24307622 24307784 -172887648 + B3A SINE B2 9 176 -22 4 770 213 65 0 0 chr1 24308834 24308865 -172886567 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 770 303 213 0 0 chr1 24310113 24310188 -172885244 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 770 1202 238 98 42 chr1 24311978 24312337 -172883095 + MTEb LTR MaLR 1 379 0 4 770 751 303 54 16 chr1 24312483 24312741 -172882691 + MLT1A0 LTR MaLR 12 279 -86 4 770 342 226 60 0 chr1 24313858 24313942 -172881490 + MER53 DNA hAT 101 189 -4 4 770 313 232 28 28 chr1 24314819 24314890 -172880542 + ID4_ SINE ID 2 72 -11 4 770 1274 155 18 79 chr1 24315249 24315529 -172879903 + ORR1D1 LTR MaLR 1 263 -111 4 770 612 174 0 0 chr1 24315556 24315677 -172879755 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 770 306 160 0 0 chr1 24315677 24315727 -172879705 + ORR1D1 LTR MaLR 335 384 0 4 770 1517 237 54 45 chr1 24318316 24318780 -172876652 + RLTR11A2 LTR ERVK 1 468 -59 4 770 1226 75 0 0 chr1 24320681 24320827 -172874605 + B1_Mus2 SINE Alu 2 147 0 4 770 234 62 0 0 chr1 24320827 24320859 -172874573 + (A)n Simple_repeat Simple_repeat 1 32 0 4 770 180 0 0 0 chr1 24320862 24320882 -172874550 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 770 1224 62 7 0 chr1 24321750 24321895 -172873537 + B1_Mm SINE Alu 2 147 0 4 770 185 83 28 0 chr1 24321898 24321934 -172873498 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 4 770 1975 192 57 8 chr1 24322382 24322778 -172872654 - Lx5 LINE L1 -6 7044 6651 4 770 1683 52 0 0 chr1 24323117 24323308 -172872124 - B2_Mm1t SINE B2 -1 192 2 4 770 414 0 0 0 chr1 24324009 24324055 -172871377 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 770 7374 69 9 1 chr1 24324881 24325767 -172869665 + RLTR13B1 LTR ERVK 1 893 0 4 770 225 94 0 0 chr1 24325774 24325806 -172869626 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 4 770 1433 209 107 3 chr1 24325844 24326180 -172869252 - Lx6 LINE L1 -11 7449 7079 4 770 331 271 203 0 chr1 24326290 24326394 -172869038 + B1_Mur1 SINE Alu 10 136 -13 4 770 21 0 0 0 chr1 24326403 24326424 -172869008 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 925 300 90 73 chr1 24326770 24326829 -172868603 - L1MA4A LINE L1 -311 5992 5936 4 770 381 22 0 0 chr1 24326829 24326875 -172868557 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 770 2067 300 90 73 chr1 24326875 24327359 -172868073 - L1MA4A LINE L1 -368 5935 5390 4 770 552 249 96 75 chr1 24327359 24327546 -172867886 - B3A SINE B2 -6 192 2 4 770 2067 311 97 48 chr1 24327546 24328822 -172866610 - L1MA4A LINE L1 -491 5389 4056 4 770 2104 135 9 27 chr1 24331052 24331386 -172864046 + ORR1A4 LTR MaLR 1 328 -1 4 770 621 0 0 0 chr1 24331690 24331759 -172863673 + (GGGAGA)n Simple_repeat Simple_repeat 3 71 0 4 770 29 70 0 0 chr1 24333289 24333346 -172862086 + AT_rich Low_complexity Low_complexity 1 57 0 4 770 327 202 48 0 chr1 24333386 24333510 -172861922 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 770 1321 56 6 6 chr1 24333702 24333882 -172861550 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 770 349 147 40 0 chr1 24333882 24333957 -172861475 + CT-rich Low_complexity Low_complexity 3 80 0 4 770 826 82 66 0 chr1 24333959 24334081 -172861351 - B1_Mus2 SINE Alu -1 146 17 4 770 664 275 0 42 chr1 24334457 24334624 -172860808 + RSINE1 SINE B4 3 162 -3 4 770 479 236 6 0 chr1 24335413 24335574 -172859858 + (CA)n Simple_repeat Simple_repeat 2 163 0 4 770 192 139 0 0 chr1 24335623 24335660 -172859772 - MIR SINE MIR -132 144 107 4 770 272 256 83 90 chr1 24336567 24336700 -172858732 - B1F SINE Alu 0 149 18 4 770 1092 194 11 0 chr1 24336845 24337031 -172858401 - B3 SINE B2 -27 189 2 4 770 234 0 0 0 chr1 24337868 24337894 -172857538 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 770 557 299 19 0 chr1 24337915 24338072 -172857360 + B4A SINE B4 39 198 -94 4 770 1144 2 31 35 chr1 24338075 24338658 -172856774 + (CA)n Simple_repeat Simple_repeat 1 580 0 5 770 378 0 0 0 chr1 24338869 24338911 -172856521 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 770 28 29 0 0 chr1 24339203 24339238 -172856194 + AT_rich Low_complexity Low_complexity 1 35 0 5 770 198 0 0 0 chr1 24339682 24339704 -172855728 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 770 8047 58 1 2 chr1 24340014 24341179 -172854253 - L1_Mus1 LINE L1 0 6567 5535 5 770 731 294 0 52 chr1 24341464 24341658 -172853774 - B3A SINE B2 -4 194 11 5 770 234 0 0 0 chr1 24341743 24341769 -172853663 + (T)n Simple_repeat Simple_repeat 1 26 0 5 770 215 304 149 50 chr1 24342187 24342429 -172853003 - MIRb SINE MIR 0 268 3 5 770 486 0 0 0 chr1 24344022 24344076 -172851356 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 5 770 1420 271 26 0 chr1 24344113 24344460 -172850972 - Lx5 LINE L1 -79 6971 6616 5 770 225 146 0 0 chr1 24344464 24344505 -172850927 + U5 snRNA snRNA 2 42 -74 5 770 234 0 0 0 chr1 24344672 24344698 -172850734 + (CAT)n Simple_repeat Simple_repeat 2 27 0 5 770 261 0 0 0 chr1 24344698 24344727 -172850705 + (CAA)n Simple_repeat Simple_repeat 1 29 0 5 770 279 0 0 0 chr1 24344963 24344994 -172850438 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 5 770 481 296 14 14 chr1 24346139 24346286 -172849146 - ID_B1 SINE B4 0 224 78 5 770 36797 22 0 1 chr1 24346824 24351716 -172843716 + L1Md_A LINE L1 954 6541 -41 5 770 1101 44 0 0 chr1 24351917 24352054 -172843378 - B1_Mm SINE Alu 0 147 11 5 770 13775 85 30 20 chr1 24352054 24354700 -172840732 - L1VL2 LINE L1 -656 2959 284 5 770 489 34 0 0 chr1 24355308 24355367 -172840065 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 5 770 883 212 61 15 chr1 24355687 24355883 -172839549 - MTC LTR MaLR -200 221 17 5 770 225 0 0 0 chr1 24356524 24356549 -172838883 + (T)n Simple_repeat Simple_repeat 1 25 0 5 770 345 138 62 0 chr1 24358115 24358180 -172837252 - L1_Mus1 LINE L1 -229 6338 6270 5 770 1164 86 0 0 chr1 24358627 24358767 -172836665 + B1_Mus1 SINE Alu 2 141 -7 5 770 357 86 0 0 chr1 24358767 24358825 -172836607 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 5 770 231 36 0 0 chr1 24358831 24358859 -172836573 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 770 706 10 48 0 chr1 24359893 24359996 -172835436 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 770 3273 132 8 4 chr1 24360685 24361200 -172834232 + L1_Mur2 LINE L1 3600 4116 -1761 5 770 1117 140 6 0 chr1 24361196 24361360 -172834072 + Lx2B LINE L1 6470 6634 -366 5 770 265 216 0 19 chr1 24361374 24361426 -172834006 + ORR1B1-int LTR MaLR 1 51 -1458 5 770 674 242 123 29 chr1 24361426 24361702 -172833730 - L1M3 LINE L1 -1707 4433 4132 5 770 571 21 54 0 chr1 24361830 24361923 -172833509 + (CATA)n Simple_repeat Simple_repeat 1 98 0 5 770 198 103 0 0 chr1 24362039 24362068 -172833364 + (TAA)n Simple_repeat Simple_repeat 3 31 0 5 770 2233 102 39 27 chr1 24362982 24363313 -172832119 + Lx2 LINE L1 6662 6996 -1 5 770 333 0 0 0 chr1 24363888 24363925 -172831507 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 770 865 205 128 31 chr1 24365749 24365945 -172829487 + B3 SINE B2 2 216 0 5 770 656 159 0 8 chr1 24366475 24366573 -172828859 + polypyrimidine Low_complexity Low_complexity 32 128 0 5 770 1030 130 6 6 chr1 24366573 24366751 -172828681 + (TCC)n Simple_repeat Simple_repeat 3 180 0 5 770 656 159 0 8 chr1 24366751 24366779 -172828653 + polypyrimidine Low_complexity Low_complexity 4 31 0 5 770 650 210 34 0 chr1 24366808 24366927 -172828505 - B2_Mm2 SINE B2 -70 125 3 5 770 195 42 0 0 chr1 24369742 24369766 -172825666 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 5 770 395 247 165 11 chr1 24370739 24370915 -172824517 + Lx8 LINE L1 7237 7439 -34 5 770 206 128 26 0 chr1 24371913 24371952 -172823480 + CT-rich Low_complexity Low_complexity 3 42 0 5 770 543 101 0 0 chr1 24372829 24372908 -172822524 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 770 1465 290 92 10 chr1 24373556 24374064 -172821368 - Tigger7 DNA MER2_type -1939 552 3 5 770 191 341 21 21 chr1 24375497 24375590 -172819842 - MIRc SINE MIR -44 224 132 5 770 1656 236 78 24 chr1 24376488 24377038 -172818394 + Lx9 LINE L1 6959 7538 -106 5 770 1512 251 64 23 chr1 24377047 24377517 -172817915 + RLTR11A2 LTR ERVK 10 498 -29 5 770 377 152 130 26 chr1 24377575 24377690 -172817742 + Lx9 LINE L1 7517 7643 -1 5 770 1485 232 89 9 chr1 24377979 24378354 -172817078 + MTD LTR MaLR 5 405 -14 5 771 198 159 0 42 chr1 24379652 24379724 -172815708 + (GGGTG)n Simple_repeat Simple_repeat 3 71 0 5 771 306 242 13 51 chr1 24379738 24379895 -172815537 + (GGGTG)n Simple_repeat Simple_repeat 3 153 0 5 771 198 97 68 27 chr1 24379899 24379973 -172815459 + (GTGTG)n Simple_repeat Simple_repeat 5 81 0 5 771 180 304 0 71 chr1 24380169 24380254 -172815178 + L2c LINE L2 3300 3378 -9 5 771 198 0 0 0 chr1 24381278 24381300 -172814132 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 771 631 251 129 31 chr1 24381841 24382034 -172813398 + B3 SINE B2 1 212 -4 5 771 278 106 21 0 chr1 24382034 24382081 -172813351 + (GAGAA)n Simple_repeat Simple_repeat 2 49 0 5 771 1084 90 6 12 chr1 24382083 24382251 -172813181 + (GGAAA)n Simple_repeat Simple_repeat 4 170 0 5 771 269 304 10 52 chr1 24382724 24382821 -172812611 - RSINE1 SINE B4 -8 157 65 5 771 194 62 31 0 chr1 24382856 24382888 -172812544 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 771 862 106 0 83 chr1 24382892 24383036 -172812396 - B1_Mur3 SINE Alu -13 136 5 5 771 2024 143 30 12 chr1 24383197 24383536 -172811896 + ORR1B1 LTR MaLR 49 393 -1 5 771 608 285 108 0 chr1 24383719 24383905 -172811527 + Lx8 LINE L1 7067 7272 -201 5 771 975 154 0 0 chr1 24383962 24384131 -172811301 + CT-rich Low_complexity Low_complexity 4 172 0 5 771 236 265 0 0 chr1 24384131 24384180 -172811252 + polypyrimidine Low_complexity Low_complexity 1 49 0 5 771 773 212 0 6 chr1 24384181 24384361 -172811071 + CT-rich Low_complexity Low_complexity 2 180 0 5 771 1142 181 22 40 chr1 24385891 24386116 -172809316 + URR1B DNA MER1_type 2 222 -3 5 771 1071 101 0 0 chr1 24386952 24387221 -172808211 + (TG)n Simple_repeat Simple_repeat 1 269 0 5 771 375 268 80 0 chr1 24387341 24387479 -172807953 + L1MB2 LINE L1 5475 5623 -545 5 771 500 295 95 34 chr1 24388293 24388651 -172806781 + L1MB2 LINE L1 5711 6090 -81 5 771 408 310 20 20 chr1 24388862 24389010 -172806422 + RSINE1 SINE B4 1 148 -17 5 771 342 0 0 0 chr1 24389038 24389076 -172806356 + (CATA)n Simple_repeat Simple_repeat 1 38 0 5 771 308 281 101 29 chr1 24389472 24389611 -172805821 + L1ME3A LINE L1 5949 6097 -76 5 771 240 35 0 0 chr1 24389797 24389826 -172805606 + (CAGG)n Simple_repeat Simple_repeat 4 32 0 5 771 464 277 11 86 chr1 24390777 24390951 -172804481 - RSINE1 SINE B4 0 165 5 5 771 613 280 86 45 chr1 24391195 24391509 -172803923 - L1MA5 LINE L1 -2 6298 5972 5 771 209 345 138 0 chr1 24393313 24393400 -172802032 - MIR SINE MIR -118 144 46 5 771 1063 254 57 0 chr1 24394747 24394995 -172800437 - Lx8 LINE L1 -115 7358 7097 5 771 305 294 67 0 chr1 24395081 24395200 -172800232 + L1MD LINE L1 5695 5821 -538 5 771 22 0 0 0 chr1 24395814 24395836 -172799596 + AT_rich Low_complexity Low_complexity 1 22 0 5 771 249 361 66 0 chr1 24395858 24395980 -172799452 + L2a LINE L2 3031 3160 -266 5 771 418 341 70 52 chr1 24396116 24396174 -172799258 - MER58A DNA MER1_type 0 224 172 5 771 836 178 178 0 chr1 24396174 24396365 -172799067 + URR1A DNA MER1_type 2 226 0 5 771 418 341 70 52 chr1 24396365 24396519 -172798913 - MER58A DNA MER1_type -53 171 8 5 771 460 173 14 36 chr1 24398418 24398556 -172796876 + (TA)n Simple_repeat Simple_repeat 2 136 0 5 771 22 0 0 0 chr1 24398575 24398597 -172796835 + AT_rich Low_complexity Low_complexity 1 22 0 5 771 519 82 0 0 chr1 24398952 24399025 -172796407 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 771 262 194 14 14 chr1 24399123 24399196 -172796236 + GA-rich Low_complexity Low_complexity 2 74 0 5 771 248 323 72 27 chr1 24399470 24399600 -172795832 + MIRm SINE MIR 44 177 -91 5 771 1104 316 99 46 chr1 24400393 24400998 -172794434 + L1_Mur3 LINE L1 4795 5398 -482 5 771 2049 189 59 50 chr1 24400998 24401544 -172793888 - RLTR31_Mur LTR ERVK -2 551 1 5 771 1104 316 99 46 chr1 24401544 24401959 -172793473 + L1_Mur3 LINE L1 5399 5869 -11 5 771 1019 271 177 75 chr1 24402222 24402941 -172792491 - Charlie10 DNA MER1_type -339 2483 1692 5 771 435 282 87 16 chr1 24402981 24403107 -172792325 - B3A SINE B2 -10 188 54 5 771 381 320 16 0 chr1 24403099 24403227 -172792205 - Charlie10 DNA MER1_type -1444 1378 1249 5 771 863 308 73 38 chr1 24403389 24403838 -172791594 - Charlie10 DNA MER1_type -1820 1002 538 5 771 1492 184 49 43 chr1 24405003 24405327 -172790105 + RMER15 LTR ERVL 233 558 -17 5 771 400 280 0 10 chr1 24405392 24405493 -172789939 + MTEb LTR MaLR 280 379 0 5 771 1360 173 0 9 chr1 24407069 24407297 -172788135 + URR1A DNA MER1_type 1 226 0 5 771 500 370 94 8 chr1 24407521 24407788 -172787644 + B4 SINE B4 2 291 -1 5 771 447 19 0 0 chr1 24407792 24407844 -172787588 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 771 29 0 0 0 chr1 24408125 24408154 -172787278 + AT_rich Low_complexity Low_complexity 1 29 0 5 771 904 219 48 14 chr1 24408168 24408376 -172787056 - B3 SINE B2 0 216 2 5 771 21 0 0 0 chr1 24408899 24408920 -172786512 + AT_rich Low_complexity Low_complexity 1 21 0 5 771 276 333 119 8 chr1 24409129 24409247 -172786185 + LTR16A1 LTR ERVL 209 339 -117 5 771 432 0 0 0 chr1 24409769 24409817 -172785615 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 771 203 182 0 0 chr1 24411040 24411073 -172784359 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 771 783 32 0 0 chr1 24411074 24411168 -172784264 + (TCC)n Simple_repeat Simple_repeat 3 96 0 5 771 328 208 40 153 chr1 24413061 24413237 -172782195 - HAL1-3A_ME LINE L1 -727 2131 1976 6 771 219 322 61 97 chr1 24413262 24413427 -172782005 - B3 SINE B2 -11 205 47 6 771 865 156 0 0 chr1 24413754 24413889 -172781543 + B1_Mur4 SINE Alu 3 137 -13 6 771 378 0 0 0 chr1 24414320 24414362 -172781070 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 771 697 59 0 0 chr1 24414362 24414464 -172780968 - L1Md_F3 LINE L1 -24 6560 6459 6 771 256 292 0 0 chr1 24414802 24414867 -172780565 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 771 23 33 0 0 chr1 24415213 24415243 -172780189 + AT_rich Low_complexity Low_complexity 1 30 0 6 771 194 279 63 32 chr1 24415446 24415509 -172779923 + L3 LINE CR1 3348 3412 -1077 6 771 406 289 116 21 chr1 24417979 24418212 -172777220 + L2 LINE L2 2379 2633 -786 6 771 22 35 0 0 chr1 24418485 24418514 -172776918 + AT_rich Low_complexity Low_complexity 1 29 0 6 771 244 214 36 0 chr1 24418603 24418659 -172776773 - tRNA-Ala-GCY_ tRNA tRNA -17 58 1 6 771 345 197 0 0 chr1 24420183 24420259 -172775173 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 771 399 68 0 0 chr1 24420797 24420856 -172774576 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 771 1200 319 134 52 chr1 24421414 24422315 -172773117 + Lx8 LINE L1 6351 7325 -148 6 771 258 32 0 0 chr1 24422321 24422352 -172773080 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 6 771 501 290 93 14 chr1 24422541 24422681 -172772751 - B3A SINE B2 -47 151 1 6 771 835 318 94 21 chr1 24422687 24423503 -172771929 - L1M2 LINE L1 -2842 3301 2426 6 771 227 222 109 77 chr1 24423510 24423666 -172771766 - Zaphod DNA Tip100 -1871 2160 2000 6 771 22 0 0 0 chr1 24424852 24424874 -172770558 + AT_rich Low_complexity Low_complexity 1 22 0 6 771 2194 94 19 0 chr1 24425810 24426130 -172769302 + IAPEY2_LTR LTR ERVK 32 357 0 6 771 6110 126 24 9 chr1 24426130 24427180 -172768252 + IAPEY3-int LTR ERVK 1 1085 -6595 6 771 4645 119 12 21 chr1 24427170 24427897 -172767535 + IAPEy-int LTR ERVK 6793 7513 0 6 771 1893 113 20 0 chr1 24427909 24428201 -172767231 + IAPEY2_LTR LTR ERVK 60 357 0 6 771 2311 48 72 9 chr1 24428347 24428665 -172766767 - ORR1A1 LTR MaLR -8 338 1 6 771 462 276 20 0 chr1 24428746 24428844 -172766588 + B4 SINE B4 2 101 -191 6 771 272 300 120 0 chr1 24428892 24428992 -172766440 + PB1D10 SINE Alu 3 114 -3 6 771 220 318 0 11 chr1 24429178 24429267 -172766165 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 6 771 17595 173 41 28 chr1 24430276 24434967 -172760465 + Lx7 LINE L1 192 4935 -945 6 771 1911 209 145 16 chr1 24434970 24435515 -172759917 + RLTR17 LTR ERVK 1 615 -77 6 771 1881 200 176 16 chr1 24435552 24435917 -172759515 + Lx7 LINE L1 4940 5392 -488 6 771 222 37 0 0 chr1 24435917 24435944 -172759488 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 6 771 1108 83 0 0 chr1 24435948 24436093 -172759339 - B1_Mus2 SINE Alu -2 145 1 6 771 4807 218 120 42 chr1 24436093 24437591 -172757841 + Lx7 LINE L1 5393 6984 -712 6 771 1028 184 147 55 chr1 24437601 24437751 -172757681 + Lx7 LINE L1 7377 7524 -172 6 771 3086 55 10 15 chr1 24437751 24438153 -172757279 + MTB LTR MaLR 1 400 0 6 771 208 0 0 59 chr1 24438154 24438188 -172757244 + (TTATA)n Simple_repeat Simple_repeat 4 35 0 6 771 1028 184 147 55 chr1 24438188 24438328 -172757104 + Lx7 LINE L1 7525 7696 0 6 771 3212 54 9 0 chr1 24438585 24439033 -172756399 - L1Md_F2 LINE L1 -666 5918 5468 6 771 5392 37 2 0 chr1 24439033 24439676 -172755756 + L1Md_F2 LINE L1 5924 6567 -15 6 771 1232 251 56 31 chr1 24440205 24440526 -172754906 - MTD LTR MaLR -90 329 1 6 771 545 122 25 57 chr1 24440565 24440687 -172754745 - Lx LINE L1 -1 6653 6536 6 771 2871 77 0 0 chr1 24440688 24441052 -172754380 - L1_Mm LINE L1 -57 5826 5463 6 771 643 179 97 0 chr1 24441153 24441298 -172754134 + Lx5 LINE L1 6892 7050 0 6 771 344 247 12 58 chr1 24441831 24441844 -172753588 - ID_B1 SINE B4 -59 165 84 6 771 377 219 14 0 chr1 24441844 24441917 -172753515 - PB1D10 SINE Alu -41 76 3 6 771 391 335 19 12 chr1 24441944 24442124 -172753308 + LTR40b LTR ERVL 116 312 -207 6 771 21 0 0 0 chr1 24442380 24442401 -172753031 + AT_rich Low_complexity Low_complexity 1 21 0 6 771 564 264 0 0 chr1 24442810 24442973 -172752459 + T-rich Low_complexity Low_complexity 1 163 0 6 771 636 176 114 8 chr1 24442990 24443122 -172752310 + B1_Mur4 SINE Alu 3 148 -2 6 771 734 243 66 43 chr1 24443169 24443380 -172752052 - B3 SINE B2 0 216 1 6 771 744 90 77 6 chr1 24443590 24443746 -172751686 + (TATATG)n Simple_repeat Simple_repeat 5 171 0 6 771 369 0 0 0 chr1 24444577 24444618 -172750814 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 771 217 286 0 14 chr1 24445865 24445936 -172749496 - L2a LINE L2 -2 3424 3355 6 771 618 39 0 0 chr1 24446372 24446449 -172748983 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 771 250 389 121 7 chr1 24446505 24446628 -172748804 - L2 LINE L2 -501 2918 2774 6 771 259 261 14 28 chr1 24446628 24446699 -172748733 + ID4_ SINE ID 3 72 -11 6 771 250 389 121 7 chr1 24446699 24446847 -172748585 - L2 LINE L2 -646 2773 2616 6 771 612 50 0 0 chr1 24447245 24447325 -172748107 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 771 344 303 90 122 chr1 24447329 24447549 -172747883 + L1MEa LINE L1 158 373 -5763 6 771 1371 177 0 0 chr1 24447549 24447775 -172747657 - URR1A DNA MER1_type 0 226 1 6 771 344 303 90 122 chr1 24447775 24447889 -172747543 + L1MEa LINE L1 374 481 -5655 6 771 1561 208 104 24 chr1 24448034 24448409 -172747023 + MTD LTR MaLR 1 405 -14 6 771 373 295 104 45 chr1 24448842 24449062 -172746370 + L1MEa LINE L1 3761 3993 -2153 6 771 2657 188 58 17 chr1 24449210 24449652 -172745780 + RLTR20B2 LTR ERVK 4 464 -96 6 771 551 74 0 12 chr1 24449652 24449734 -172745698 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 771 2657 188 58 17 chr1 24449734 24449826 -172745606 + RLTR20B2 LTR ERVK 465 560 0 6 771 772 259 19 0 chr1 24450842 24451047 -172744385 + Lx8 LINE L1 6666 6874 -599 6 771 2354 263 102 11 chr1 24451043 24451706 -172743726 + Lx8 LINE L1 6285 7018 -455 6 771 7539 41 1 2 chr1 24451706 24452618 -172742814 + L1Md_F2 LINE L1 5668 6578 -4 6 771 2354 263 102 11 chr1 24452618 24452693 -172742739 + Lx8 LINE L1 7019 7090 -383 6 771 234 280 69 88 chr1 24452696 24452798 -172742634 - RLTR17 LTR ERVK -35 657 558 6 771 482 179 0 0 chr1 24452798 24452882 -172742550 - Lx9 LINE L1 -300 7344 7261 6 771 706 132 20 90 chr1 24452889 24453089 -172742343 + Lx9 LINE L1 7449 7634 -10 6 771 225 368 16 0 chr1 24453451 24453576 -172741856 + CT-rich Low_complexity Low_complexity 2 128 0 6 771 533 128 0 0 chr1 24454054 24454148 -172741284 + Lx9 LINE L1 7542 7635 -9 6 771 1408 51 15 44 chr1 24454654 24454860 -172740572 - L1_Mus3 LINE L1 -211 6427 6228 6 771 842 76 90 0 chr1 24454854 24454999 -172740433 + L1_Mus3 LINE L1 6424 6581 -57 6 771 240 324 85 35 chr1 24455175 24455316 -172740116 + MER5A DNA MER1_type 42 189 0 6 771 22 80 0 0 chr1 24455536 24455586 -172739846 + AT_rich Low_complexity Low_complexity 1 50 0 6 771 2775 134 4 4 chr1 24455908 24456358 -172739074 - L1_Mus4 LINE L1 -212 5671 5222 6 771 6220 96 5 11 chr1 24456358 24457239 -172738193 + L1_Mus4 LINE L1 5745 6619 -17 6 771 570 250 0 0 chr1 24457915 24458019 -172737413 + B1_Mur2 SINE Alu 3 106 -43 6 771 581 190 12 19 chr1 24458036 24458197 -172737235 + GA-rich Low_complexity Low_complexity 1 160 0 6 771 21 36 0 0 chr1 24458276 24458304 -172737128 + AT_rich Low_complexity Low_complexity 1 28 0 6 771 630 241 21 7 chr1 24459368 24459510 -172735922 + B1F2 SINE Alu 2 145 -4 6 771 978 156 0 0 chr1 24460389 24460562 -172734870 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 771 271 0 51 0 chr1 24460738 24460777 -172734655 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 6 771 24 67 0 0 chr1 24461815 24461860 -172733572 + AT_rich Low_complexity Low_complexity 1 45 0 6 771 321 301 126 53 chr1 24462413 24462564 -172732868 + MER31B LTR ERV1 31 192 -274 6 771 380 280 158 39 chr1 24462829 24463063 -172732369 + MER31B LTR ERV1 168 429 -37 6 771 279 0 0 0 chr1 24463085 24463116 -172732316 + (CAGT)n Simple_repeat Simple_repeat 2 32 0 6 771 456 19 0 0 chr1 24463116 24463168 -172732264 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 6 771 24 0 0 0 chr1 24463470 24463494 -172731938 + AT_rich Low_complexity Low_complexity 1 24 0 6 771 433 343 33 28 chr1 24464124 24464418 -172731014 + Lx9 LINE L1 7095 7429 -215 6 771 573 115 0 0 chr1 24464418 24464505 -172730927 + (CGTG)n Simple_repeat Simple_repeat 1 87 0 6 771 299 365 40 55 chr1 24464505 24464582 -172730850 + Lx9 LINE L1 7338 7417 -56 6 771 22 80 0 0 chr1 24464884 24464934 -172730498 + AT_rich Low_complexity Low_complexity 1 50 0 6 771 296 307 126 38 chr1 24465286 24465469 -172729963 - MIR SINE MIR -30 232 34 6 771 203 171 0 0 chr1 24465644 24465679 -172729753 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 771 600 14 0 0 chr1 24465679 24465748 -172729684 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 771 565 182 19 19 chr1 24465829 24465986 -172729446 - Lx9 LINE L1 0 7644 7488 6 771 23 0 0 0 chr1 24467680 24467703 -172727729 + AT_rich Low_complexity Low_complexity 1 23 0 6 771 463 217 9 0 chr1 24468637 24468743 -172726689 + L1M5 LINE L1 5564 5670 -454 6 771 409 281 97 7 chr1 24469056 24469210 -172726222 + Lx8 LINE L1 6934 7101 -372 6 771 3296 36 8 0 chr1 24469212 24469605 -172725827 + MTA_Mm LTR MaLR 1 396 0 6 771 8121 46 30 3 chr1 24469605 24469972 -172725460 + MTA_Mm-int LTR MaLR 1 376 -722 6 771 3197 44 5 0 chr1 24469972 24470361 -172725071 + L1Md_F2 LINE L1 6192 6582 0 6 771 8121 46 30 3 chr1 24470361 24471062 -172724370 + MTA_Mm-int LTR MaLR 377 1098 0 6 771 3335 33 8 0 chr1 24471062 24471455 -172723977 + MTA_Mm LTR MaLR 1 396 0 6 771 227 325 12 12 chr1 24471463 24471547 -172723885 + Lx8 LINE L1 7118 7201 -272 6 771 180 135 26 51 chr1 24471927 24472005 -172723427 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 771 1036 63 177 0 chr1 24472124 24472282 -172723150 + B2_Mm2 SINE B2 1 186 -9 6 771 524 237 25 17 chr1 24472563 24472683 -172722749 + RSINE1 SINE B4 6 126 -39 6 771 342 67 0 0 chr1 24472733 24472778 -172722654 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 771 816 269 9 14 chr1 24473034 24473245 -172722187 + B3 SINE B2 1 210 -6 6 771 462 270 27 33 chr1 24473590 24473774 -172721658 - HAL1-2a_MD LINE L1 -499 2525 2343 6 771 230 266 12 14 chr1 24473903 24473985 -172721447 - MIR SINE MIR -40 168 87 6 771 487 324 64 17 chr1 24474157 24474330 -172721102 + B3A SINE B2 1 181 -17 6 771 508 352 38 72 chr1 24474493 24474729 -172720703 - MER20 DNA MER1_type -555 228 1 6 771 497 313 92 13 chr1 24475934 24476085 -172719347 - B3A SINE B2 -7 191 29 7 771 1248 171 133 48 chr1 24476085 24476422 -172719010 + ORR1D1 LTR MaLR 1 366 -8 7 771 447 236 65 19 chr1 24477160 24477268 -172718164 + B1_Mur1 SINE Alu 1 113 -36 7 771 188 286 48 0 chr1 24478652 24478715 -172716717 + MIRb SINE MIR 120 185 -83 7 771 279 268 38 75 chr1 24478819 24478952 -172716480 + RMER15 LTR ERVL 4 131 -444 7 771 263 291 262 0 chr1 24478999 24479140 -172716292 + RMER15 LTR ERVL 337 514 -61 7 771 297 287 29 22 chr1 24480091 24480230 -172715202 + L1MC5 LINE L1 7084 7223 -738 7 771 735 295 40 44 chr1 24480282 24480534 -172714898 + B4A SINE B4 42 292 0 7 771 408 40 0 0 chr1 24480552 24480602 -172714830 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 771 11214 220 62 62 chr1 24480602 24482804 -172712628 + L1_Rod LINE L1 1289 3576 -2271 7 771 1185 101 0 0 chr1 24482804 24482983 -172712449 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 771 11214 220 62 62 chr1 24482983 24484124 -172711308 + L1_Rod LINE L1 3577 4686 -1161 7 771 1185 181 18 5 chr1 24484124 24484346 -172711086 - URR1B DNA MER1_type 0 225 1 7 771 11214 220 62 62 chr1 24484346 24484449 -172710983 + L1_Rod LINE L1 4687 4788 -1059 7 771 3121 36 23 3 chr1 24484449 24484837 -172710595 + MTA_Mm LTR MaLR 1 396 0 7 771 11214 220 62 62 chr1 24484837 24485418 -172710014 + L1_Rod LINE L1 4789 5319 -528 7 771 629 258 69 5 chr1 24485417 24485601 -172709831 + Lx6 LINE L1 7245 7442 -18 7 771 408 40 0 0 chr1 24485601 24485651 -172709781 + (TAA)n Simple_repeat Simple_repeat 2 51 0 7 771 629 258 69 5 chr1 24485651 24485669 -172709763 + Lx6 LINE L1 7443 7460 0 7 771 2292 146 5 24 chr1 24485672 24486052 -172709380 - MTB_Mm LTR MaLR -27 380 8 7 771 596 282 44 6 chr1 24488657 24488839 -172706593 - MTD LTR MaLR -4 415 227 7 771 265 286 0 94 chr1 24488855 24488940 -172706492 - MTD LTR MaLR -300 119 43 7 771 309 51 0 0 chr1 24489079 24489118 -172706314 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 771 511 288 28 99 chr1 24489197 24489409 -172706023 + B3A SINE B2 2 198 0 7 771 305 316 0 0 chr1 24489957 24490033 -172705399 + ID4 SINE ID 8 83 0 7 771 256 258 42 0 chr1 24490043 24490163 -172705269 + (TA)n Simple_repeat Simple_repeat 1 125 0 7 771 35 54 0 0 chr1 24490587 24490643 -172704789 + AT_rich Low_complexity Low_complexity 1 56 0 7 771 208 176 53 8 chr1 24490655 24490787 -172704645 + (TA)n Simple_repeat Simple_repeat 1 138 0 7 771 21 36 0 0 chr1 24490797 24490825 -172704607 + AT_rich Low_complexity Low_complexity 1 28 0 7 771 266 291 58 0 chr1 24490825 24490928 -172704504 - L1MC LINE L1 -2078 5804 5696 7 771 256 297 26 35 chr1 24491153 24491268 -172704164 - L1MC LINE L1 -2254 5628 5515 7 771 345 281 40 32 chr1 24491946 24492071 -172703361 + RSINE1 SINE B4 4 129 -36 7 771 206 136 29 43 chr1 24493578 24493647 -172701785 + T-rich Low_complexity Low_complexity 4 71 0 7 771 211 205 0 0 chr1 24493900 24493939 -172701493 + A-rich Low_complexity Low_complexity 3 41 0 7 771 300 305 107 58 chr1 24493944 24494205 -172701227 + B4A SINE B4 1 274 -18 7 771 276 217 0 0 chr1 24494384 24494476 -172700956 + CT-rich Low_complexity Low_complexity 1 92 0 7 771 702 48 29 0 chr1 24494796 24494899 -172700533 + (TCC)n Simple_repeat Simple_repeat 3 108 0 7 771 552 30 0 0 chr1 24494901 24494967 -172700465 + (TC)n Simple_repeat Simple_repeat 2 67 0 7 771 579 29 0 0 chr1 24495345 24495414 -172700018 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 7 771 219 326 179 0 chr1 24495781 24495876 -172699556 + L2b LINE L2 3264 3375 0 7 771 192 342 113 27 chr1 24496421 24496643 -172698789 + L3 LINE CR1 3540 3780 -709 7 771 192 200 0 0 chr1 24496813 24496853 -172698579 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 771 9697 78 14 7 chr1 24496945 24498459 -172696973 + Lx3_Mus LINE L1 5487 7008 -1 7 771 267 341 0 0 chr1 24499625 24499707 -172695725 + ID4_ SINE ID 1 82 -1 7 771 194 342 96 35 chr1 24500765 24500880 -172694552 - L2a LINE L2 -23 3403 3282 1 771 826 270 117 48 chr1 24501011 24501358 -172694074 + MTE2a LTR MaLR 38 379 0 2 771 297 0 0 0 chr1 24501634 24501667 -172693765 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 771 38506 6 1 0 chr1 24503179 24508736 -172686696 + L1Md_A LINE L1 27 5586 -297 4 771 8978 4 0 0 chr1 24508736 24509732 -172685700 + L1Md_A LINE L1 5587 6582 0 4 771 21 0 0 0 chr1 24509732 24509753 -172685679 + AT_rich Low_complexity Low_complexity 1 21 0 5 771 180 97 0 0 chr1 24509886 24509917 -172685515 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 771 833 180 6 0 chr1 24509986 24510153 -172685279 + CT-rich Low_complexity Low_complexity 1 168 0 7 772 1023 97 7 7 chr1 24510587 24510732 -172684700 - B1_Mus2 SINE Alu 0 147 3 8 772 348 133 0 0 chr1 24511857 24511917 -172683515 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 772 300 281 133 55 chr1 24512861 24512908 -172682524 - B3 SINE B2 -4 212 167 1 772 368 20 0 20 chr1 24512908 24512958 -172682474 + (TATG)n Simple_repeat Simple_repeat 3 51 0 1 772 300 281 133 55 chr1 24512958 24513038 -172682394 - B3 SINE B2 -50 166 75 1 772 767 237 72 21 chr1 24513205 24513399 -172682033 + Lx7 LINE L1 5616 5819 -1877 1 772 270 56 0 0 chr1 24513761 24513797 -172681635 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 772 315 0 0 0 chr1 24514134 24514169 -172681263 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 772 447 271 14 85 chr1 24515903 24516044 -172679388 - ID_B1 SINE B4 -6 218 88 1 772 307 354 8 30 chr1 24517164 24517298 -172678134 - ID_B1 SINE B4 -2 222 92 1 772 394 168 19 19 chr1 24518048 24518151 -172677281 + CT-rich Low_complexity Low_complexity 2 104 0 1 772 192 234 0 0 chr1 24519964 24520011 -172675421 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 772 460 231 11 0 chr1 24520184 24520275 -172675157 + RSINE1 SINE B4 61 152 -13 1 772 295 336 32 65 chr1 24520589 24520667 -172674765 - L3 LINE CR1 -472 4017 3937 2 772 294 29 0 0 chr1 24520667 24520702 -172674730 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 772 295 336 32 65 chr1 24520702 24520747 -172674685 - L3 LINE CR1 -553 3936 3899 2 772 1339 173 152 9 chr1 24523002 24523351 -172672081 + Lx9 LINE L1 7241 7639 -5 2 772 217 394 61 24 chr1 24524518 24524731 -172670701 + MIRb SINE MIR 17 237 -31 2 772 586 233 30 0 chr1 24525257 24525390 -172670042 + B1_Mur1 SINE Alu 6 142 -7 2 772 350 193 8 0 chr1 24525715 24525841 -172669591 + (TG)n Simple_repeat Simple_repeat 1 127 0 2 772 1351 197 35 19 chr1 24526699 24527015 -172668417 + Lx5 LINE L1 6728 7048 -2 2 772 1422 191 119 24 chr1 24527844 24528172 -172667260 + Lx5 LINE L1 6689 7047 -3 2 772 317 269 13 0 chr1 24528206 24528284 -172667148 + ID4 SINE ID 4 82 -1 2 772 385 252 29 10 chr1 24528607 24528711 -172666721 - PB1D7 SINE Alu -8 112 7 2 772 41 58 0 0 chr1 24528953 24529022 -172666410 + AT_rich Low_complexity Low_complexity 1 69 0 3 772 314 390 35 6 chr1 24529101 24529274 -172666158 - MER58A DNA MER1_type -8 216 39 3 772 642 65 0 0 chr1 24532571 24532663 -172662769 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 772 267 307 156 6 chr1 24533929 24534096 -172661336 + B3A SINE B2 1 192 -6 3 772 327 296 144 66 chr1 24534943 24535214 -172660218 - B4A SINE B4 0 292 1 3 772 1164 48 0 14 chr1 24536372 24536520 -172658912 + B1_Mus1 SINE Alu 2 147 -1 3 772 221 338 97 26 chr1 24537381 24537463 -172657969 + ID_B1 SINE B4 59 224 0 3 772 283 264 14 14 chr1 24537463 24537536 -172657896 + B1F SINE Alu 77 149 0 3 772 536 361 50 18 chr1 24538432 24538714 -172656718 + B4A SINE B4 1 291 -1 3 772 347 328 25 0 chr1 24538905 24539027 -172656405 + Lx8 LINE L1 6796 6920 -553 3 772 351 295 113 14 chr1 24540244 24540385 -172655047 - HAL1-3A_ME LINE L1 -420 2438 2284 4 772 785 160 17 17 chr1 24540385 24540563 -172654869 + CT-rich Low_complexity Low_complexity 1 178 0 4 772 576 299 9 84 chr1 24540566 24540792 -172654640 - ID_B1 SINE B4 -15 209 1 4 772 180 271 42 0 chr1 24541965 24542013 -172653419 + L2a LINE L2 3295 3344 -82 4 772 334 229 16 0 chr1 24542091 24542213 -172653219 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 772 257 0 0 29 chr1 24542381 24542415 -172653017 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 4 772 203 274 0 0 chr1 24542582 24542633 -172652799 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4 772 445 356 9 68 chr1 24542641 24542802 -172652630 - B4A SINE B4 -84 208 50 4 772 216 86 0 0 chr1 24542802 24542837 -172652595 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 772 1096 79 0 0 chr1 24542837 24542977 -172652455 - B1_Mus1 SINE Alu -8 140 1 4 772 445 356 9 68 chr1 24542977 24543034 -172652398 - B4A SINE B4 -243 49 3 4 772 780 211 32 46 chr1 24543287 24543506 -172651926 + B3 SINE B2 1 216 0 5 772 234 0 0 0 chr1 24544466 24544492 -172650940 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 772 324 70 0 0 chr1 24545924 24545967 -172649465 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 772 748 311 63 41 chr1 24546690 24547056 -172648376 - Charlie8 DNA MER1_type -2008 420 47 5 772 554 298 119 27 chr1 24547465 24547685 -172647747 - L1MEf LINE L1 -3328 2818 2575 5 772 631 125 0 62 chr1 24547685 24547830 -172647602 - L1_Mus3 LINE L1 -1 6637 6502 5 772 554 298 119 27 chr1 24547830 24547978 -172647454 - L1MEf LINE L1 -3572 2574 2416 5 772 302 316 41 69 chr1 24548323 24548568 -172646864 - L1MEf LINE L1 -4266 1976 1739 5 772 413 303 69 0 chr1 24548618 24548763 -172646669 + B4 SINE B4 2 156 -136 5 772 572 129 2 21 chr1 24550437 24550533 -172644899 + B1_Mus2 SINE Alu 44 141 -8 5 772 243 61 0 0 chr1 24550533 24550566 -172644866 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 772 321 309 145 14 chr1 24551695 24551833 -172643599 + HAL1-3A_ME LINE L1 2284 2439 -419 5 772 235 217 0 0 chr1 24551834 24551880 -172643552 + GA-rich Low_complexity Low_complexity 1 46 0 6 772 263 322 146 5 chr1 24551915 24552127 -172643305 + L2a LINE L2 2378 2619 -800 6 772 9006 3 0 0 chr1 24552136 24553463 -172641969 - L1Md_A LINE L1 0 6582 5256 6 772 186 392 91 29 chr1 24553463 24553739 -172641693 + L2a LINE L2 2613 2905 -514 6 772 186 323 168 75 chr1 24553852 24554173 -172641259 + L2a LINE L2 3039 3389 -37 6 772 22 56 0 0 chr1 24554881 24554917 -172640515 + AT_rich Low_complexity Low_complexity 1 36 0 6 772 348 24 0 0 chr1 24555246 24555287 -172640145 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 772 192 188 0 0 chr1 24556471 24556535 -172638897 + A-rich Low_complexity Low_complexity 1 64 0 6 772 180 0 0 0 chr1 24557652 24557672 -172637760 + (T)n Simple_repeat Simple_repeat 1 20 0 6 772 342 0 0 0 chr1 24558242 24558280 -172637152 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 772 498 17 0 0 chr1 24558280 24558338 -172637094 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 772 251 311 143 11 chr1 24558398 24558489 -172636943 + LTR88a LTR Gypsy 245 347 -469 6 772 271 237 108 0 chr1 24558548 24558641 -172636791 - MTD LTR MaLR -302 117 15 7 772 268 219 14 14 chr1 24560904 24560978 -172634454 + (TTA)n Simple_repeat Simple_repeat 2 75 0 7 772 771 247 27 27 chr1 24560994 24561181 -172634251 - B3A SINE B2 0 198 12 7 772 21 0 0 0 chr1 24561459 24561480 -172633952 + AT_rich Low_complexity Low_complexity 1 21 0 7 772 416 291 54 12 chr1 24561554 24561721 -172633711 + L1MA4 LINE L1 5691 5864 -436 7 772 506 299 58 28 chr1 24562567 24562851 -172632581 - L1MA6 LINE L1 -9 6291 5996 7 772 754 279 144 9 chr1 24562851 24563177 -172632255 + ORR1D2 LTR MaLR 1 370 0 7 772 506 299 58 28 chr1 24563177 24563219 -172632213 - L1MA6 LINE L1 -305 5995 5955 7 772 22 0 0 0 chr1 24563713 24563735 -172631697 + AT_rich Low_complexity Low_complexity 1 22 0 7 772 360 64 0 0 chr1 24565525 24565572 -172629860 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 772 281 26 26 0 chr1 24566694 24566732 -172628700 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 772 223 49 49 0 chr1 24566884 24566925 -172628507 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 772 238 242 242 0 chr1 24567304 24567370 -172628062 + PB1D10 SINE Alu 2 83 -34 8 772 299 96 19 0 chr1 24567394 24567446 -172627986 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 8 772 25 31 0 0 chr1 24567489 24567521 -172627911 + AT_rich Low_complexity Low_complexity 1 32 0 8 772 207 100 0 0 chr1 24568215 24568245 -172627187 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 772 249 286 70 20 chr1 24568355 24568455 -172626977 + MIR SINE MIR 132 236 -26 8 772 601 47 24 0 chr1 24569267 24569352 -172626080 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 772 387 297 138 33 chr1 24569357 24569928 -172625504 + L1M5 LINE L1 4622 5252 -894 8 772 266 293 83 52 chr1 24570041 24570293 -172625139 + L1M5 LINE L1 5343 5602 -562 8 772 858 70 0 0 chr1 24570499 24570613 -172624819 + (GGAA)n Simple_repeat Simple_repeat 2 115 0 8 772 450 0 0 0 chr1 24572276 24572326 -172623106 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 772 207 100 0 0 chr1 24572769 24572799 -172622633 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 9 772 862 277 19 15 chr1 24573133 24573338 -172622094 + B3 SINE B2 6 211 -5 9 772 425 328 44 44 chr1 24573547 24573751 -172621681 + Tigger7 DNA MER2_type 2284 2487 -4 9 772 316 378 0 18 chr1 24573856 24573969 -172621463 - MamRep605 Unknown Unknown -74 802 692 9 772 352 286 58 42 chr1 24574188 24574378 -172621054 + MER53 DNA hAT 1 193 0 9 772 1276 270 75 40 chr1 24574658 24575470 -172619962 + L1MA5 LINE L1 5137 5972 -328 9 772 828 267 67 95 chr1 24575493 24575715 -172619717 + MTE2b LTR MaLR 2 237 -142 9 772 1092 159 54 14 chr1 24575715 24575938 -172619494 - Lx2 LINE L1 0 6997 6766 9 772 828 275 82 93 chr1 24575938 24576070 -172619362 + MTE2b LTR MaLR 238 366 -13 9 772 210 159 0 92 chr1 24576081 24576157 -172619275 + GA-rich Low_complexity Low_complexity 1 69 0 9 772 35 41 0 0 chr1 24576221 24576270 -172619162 + AT_rich Low_complexity Low_complexity 1 49 0 9 772 3081 68 2 2 chr1 24576338 24576734 -172618698 - MTA_Mm LTR MaLR 0 396 1 1 772 687 84 0 0 chr1 24576895 24576990 -172618442 + (GGGGA)n Simple_repeat Simple_repeat 3 97 0 1 772 180 0 0 0 chr1 24577445 24577465 -172617967 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 772 315 0 0 0 chr1 24577465 24577499 -172617933 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 772 1145 244 72 26 chr1 24577541 24577806 -172617626 - B4 SINE B4 -4 288 12 1 772 498 61 0 0 chr1 24577806 24577872 -172617560 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 772 2145 183 74 9 chr1 24577902 24578349 -172617083 - Lx5 LINE L1 -3 7047 6572 1 772 294 125 0 0 chr1 24579958 24580006 -172615426 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 772 894 31 154 23 chr1 24580684 24580814 -172614618 + B1_Mus1 SINE Alu 1 147 -1 1 772 588 29 0 0 chr1 24581204 24581274 -172614158 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 772 1340 65 27 11 chr1 24581406 24581594 -172613838 + B2_Mm2 SINE B2 4 194 -1 1 772 423 339 41 31 chr1 24582610 24582927 -172612505 - L1MB3 LINE L1 -3 6180 5861 1 772 498 75 0 0 chr1 24582933 24583000 -172612432 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 772 852 311 89 8 chr1 24583035 24583294 -172612138 - B4 SINE B4 -4 288 9 1 772 617 285 115 31 chr1 24583356 24583747 -172611685 - L1MB3 LINE L1 -397 5771 5348 1 772 1415 241 98 50 chr1 24583855 24584353 -172611079 + RLTR11A LTR ERVK 7 528 0 1 772 964 216 57 24 chr1 24584830 24585039 -172610393 + B3 SINE B2 1 216 0 1 772 514 149 47 9 chr1 24586378 24586717 -172608715 + (TCTA)n Simple_repeat Simple_repeat 1 352 0 1 772 21 71 0 0 chr1 24587272 24587314 -172608118 + AT_rich Low_complexity Low_complexity 1 42 0 1 772 1219 91 34 0 chr1 24587364 24587540 -172607892 + B2_Mm2 SINE B2 1 182 -13 1 772 260 59 0 0 chr1 24587617 24587651 -172607781 + B2_Mm2 SINE B2 64 97 -98 1 772 21 71 0 0 chr1 24587677 24587719 -172607713 + AT_rich Low_complexity Low_complexity 1 42 0 1 772 25 65 0 0 chr1 24587754 24587800 -172607632 + AT_rich Low_complexity Low_complexity 1 46 0 1 772 624 301 19 58 chr1 24588664 24588869 -172606563 + B3A SINE B2 2 198 0 1 772 360 0 0 0 chr1 24589427 24589467 -172605965 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 772 435 19 0 0 chr1 24589467 24589519 -172605913 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 772 212 235 0 19 chr1 24590033 24590085 -172605347 + C-rich Low_complexity Low_complexity 3 53 0 1 772 212 366 14 0 chr1 24590641 24590712 -172604720 - ID SINE ID -150 74 3 1 772 317 243 9 27 chr1 24594818 24594928 -172600504 + (TA)n Simple_repeat Simple_repeat 1 108 0 1 772 432 174 0 0 chr1 24595850 24595942 -172599490 + CT-rich Low_complexity Low_complexity 3 94 0 1 772 244 252 113 0 chr1 24597224 24597339 -172598093 + L1ME4a LINE L1 5991 6118 -6 1 772 21 0 0 0 chr1 24599273 24599294 -172596138 + AT_rich Low_complexity Low_complexity 1 21 0 1 772 466 190 128 20 chr1 24599406 24599508 -172595924 - PB1D9 SINE Alu -6 114 2 1 772 244 333 14 0 chr1 24599828 24599897 -172595535 + MLT1A0 LTR MaLR 72 141 -224 1 772 3450 74 13 0 chr1 24599922 24600369 -172595063 - L1_Mus1 LINE L1 0 6567 6115 1 772 1328 67 0 0 chr1 24600371 24600550 -172594882 + L1Md_F2 LINE L1 5948 6126 -456 1 772 345 282 11 23 chr1 24600550 24600637 -172594795 + MLT1A0 LTR MaLR 130 215 -150 1 772 270 196 31 0 chr1 24600651 24600748 -172594684 - Lx2B LINE L1 -5 6995 6896 1 772 215 213 0 0 chr1 24600918 24600965 -172594467 + CT-rich Low_complexity Low_complexity 1 47 0 1 772 2998 163 9 18 chr1 24602318 24602873 -172592559 - Lx2B LINE L1 -67 6933 6384 1 772 356 257 34 27 chr1 24602889 24603013 -172592419 + MLT1A0 LTR MaLR 238 406 -2 1 772 328 245 39 58 chr1 24602971 24603075 -172592357 - MTE2a LTR MaLR 0 379 278 1 772 243 318 33 22 chr1 24603490 24603580 -172591852 - MLT1G1 LTR MaLR -7 572 482 1 772 6669 208 57 10 chr1 24603707 24605243 -172590189 - Lx7 LINE L1 -367 7329 5721 1 772 263 301 12 35 chr1 24606447 24606533 -172588899 - MER94 DNA AcHobo -1 133 50 1 772 261 0 0 0 chr1 24607447 24607476 -172587956 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 772 264 30 0 0 chr1 24607671 24607704 -172587728 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 1 772 1224 35 7 0 chr1 24607713 24607858 -172587574 - B1_Mm SINE Alu -1 146 1 1 772 270 0 0 0 chr1 24607985 24608015 -172587417 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 1 772 333 340 66 58 chr1 24608033 24608398 -172587034 - L2a LINE L2 -4 3422 3055 1 772 1617 153 53 137 chr1 24609683 24610046 -172585386 + ORR1B1 LTR MaLR 6 345 -49 1 772 2347 188 37 0 chr1 24610046 24610510 -172584922 + Lx3C LINE L1 6495 6975 -1 1 772 1617 148 54 145 chr1 24610510 24610598 -172584834 + ORR1B1 LTR MaLR 346 394 0 1 772 6542 94 62 1 chr1 24610610 24612037 -172583395 - L1_Mus3 LINE L1 -1 6637 5120 1 772 10183 116 4 6 chr1 24612025 24612364 -172583068 + L1_Mm LINE L1 3512 3854 -2029 1 772 252 77 0 0 chr1 24612364 24612403 -172583029 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 772 10183 116 4 6 chr1 24612403 24613688 -172581744 + L1_Mm LINE L1 3855 5131 -752 1 772 341 315 183 56 chr1 24613802 24614229 -172581203 + L1MEg LINE L1 667 1147 -4937 1 772 565 229 121 46 chr1 24614431 24614605 -172580827 + B3A SINE B2 1 187 -11 1 772 580 285 56 56 chr1 24614713 24614910 -172580522 - B3A SINE B2 0 198 2 1 772 2056 206 25 42 chr1 24615149 24615631 -172579801 - RMER19C LTR ERVK 0 611 138 1 772 900 174 181 9 chr1 24616275 24616384 -172579048 - RMER1B Other Other -9 1057 919 1 772 204 40 0 0 chr1 24616384 24616409 -172579023 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 772 900 174 181 9 chr1 24616409 24616525 -172578907 - RMER1B Other Other -148 918 793 1 772 23 0 0 0 chr1 24617213 24617236 -172578196 + AT_rich Low_complexity Low_complexity 1 23 0 1 772 300 225 296 24 chr1 24617268 24617400 -172578032 + B3A SINE B2 1 168 -30 1 772 557 83 12 0 chr1 24617404 24617488 -172577944 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 772 452 262 136 44 chr1 24617497 24617554 -172577878 + MTEa LTR MaLR 155 239 -140 1 772 189 0 0 0 chr1 24617554 24617575 -172577857 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 772 452 252 114 66 chr1 24617575 24617706 -172577726 + MTEa LTR MaLR 240 379 0 1 772 284 211 18 0 chr1 24617997 24618054 -172577378 - RMER6A LTR ERVK -4 752 695 1 772 2798 3 0 0 chr1 24618065 24618376 -172577056 - L1Md_A LINE L1 0 6582 6272 1 772 23 0 0 0 chr1 24618883 24618906 -172576526 + AT_rich Low_complexity Low_complexity 1 23 0 1 772 395 174 14 0 chr1 24622478 24622547 -172572885 + tRNA-Ser-TCA(m) tRNA tRNA 1 70 -3 1 772 5241 3 0 0 chr1 24623023 24623642 -172571790 - L1_Mm LINE L1 -1374 4509 3891 1 772 3716 141 35 19 chr1 24623642 24624341 -172571091 - RMER6A LTR ERVK -67 689 1 1 772 353 320 53 30 chr1 24624921 24625053 -172570379 - B3A SINE B2 0 216 82 1 772 4013 119 61 26 chr1 24625466 24626121 -172569311 - RLTR33 LTR ERVK 0 678 1 1 772 512 227 129 5 chr1 24626298 24626484 -172568948 - Lx9 LINE L1 -56 7588 7380 1 772 2648 186 34 77 chr1 24626478 24626752 -172568680 + Lx9 LINE L1 6940 7206 -438 1 772 4158 191 24 45 chr1 24626752 24627675 -172567757 + RMER13B LTR ERVK 2 904 -4 1 772 2648 186 34 77 chr1 24627675 24628132 -172567300 + Lx9 LINE L1 7207 7640 -4 1 772 400 268 80 16 chr1 24628308 24628433 -172566999 - RSINE1 SINE B4 -30 135 3 1 772 204 306 85 85 chr1 24629654 24629772 -172565660 + MIR3 SINE MIR 44 161 -47 1 772 554 302 53 6 chr1 24630114 24630284 -172565148 - B3A SINE B2 -18 180 3 1 772 689 178 0 0 chr1 24630378 24630496 -172564936 + MTC LTR MaLR 1 118 -303 1 772 2147 151 65 8 chr1 24630496 24631280 -172564152 + Lx4B LINE L1 5706 6627 -431 1 772 1659 210 20 0 chr1 24631280 24631585 -172563847 + MTC LTR MaLR 109 419 -2 1 772 615 234 93 27 chr1 24631697 24631920 -172563512 - MTEb LTR MaLR -9 370 82 1 772 780 72 24 0 chr1 24631920 24632045 -172563387 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 772 276 279 180 0 chr1 24632045 24632104 -172563328 - MTEb LTR MaLR -298 81 7 1 772 22 0 0 0 chr1 24632195 24632217 -172563215 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 1310 85 11 0 chr1 24632217 24632393 -172563039 + B2_Mm1t SINE B2 2 179 -14 1 772 283 185 0 36 chr1 24632425 24632481 -172562951 + B2_Mm2 SINE B2 47 100 -95 1 772 31 44 0 0 chr1 24632504 24632549 -172562883 + AT_rich Low_complexity Low_complexity 1 45 0 1 772 230 207 17 0 chr1 24633135 24633193 -172562239 + (TAGG)n Simple_repeat Simple_repeat 1 59 0 1 772 270 0 0 0 chr1 24633199 24633229 -172562203 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 772 2960 72 23 3 chr1 24633229 24633619 -172561813 - MTB LTR MaLR 0 400 3 1 772 327 45 182 0 chr1 24633621 24633687 -172561745 - MTB-int LTR MaLR 0 1098 1021 1 772 497 42 42 14 chr1 24633658 24633730 -172561702 + MTA_Mm LTR MaLR 317 390 -6 1 772 396 0 0 0 chr1 24633730 24633774 -172561658 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 772 238 343 5 38 chr1 24634551 24634701 -172560731 + MIR SINE MIR 13 157 -51 1 772 196 345 102 14 chr1 24635069 24635216 -172560216 + MER5A DNA MER1_type 7 166 -23 1 772 5433 182 35 26 chr1 24635305 24636489 -172558943 + MYSERV16_I-int LTR ERVK 611 1804 -522 1 772 1105 157 5 5 chr1 24636481 24636686 -172558746 + MYSERV16_I-int LTR ERVK 1912 2116 -210 1 772 333 173 80 0 chr1 24636741 24636816 -172558616 - RMER1B Other Other -927 139 59 1 772 1054 140 85 30 chr1 24637715 24637914 -172557518 - ORR1C2 LTR MaLR 0 384 175 1 772 659 142 21 21 chr1 24637914 24638058 -172557374 + GA-rich Low_complexity Low_complexity 3 146 0 1 772 1210 174 26 13 chr1 24638064 24638309 -172557123 - ORR1C2 LTR MaLR -111 259 2 1 772 491 312 41 0 chr1 24638535 24638845 -172556587 + L1MA5 LINE L1 5612 5936 -364 1 772 405 0 0 0 chr1 24638847 24638892 -172556540 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 772 468 0 0 0 chr1 24638892 24638943 -172556489 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 772 24 0 0 0 chr1 24639025 24639049 -172556383 + AT_rich Low_complexity Low_complexity 1 24 0 2 772 4366 90 31 5 chr1 24639049 24639664 -172555768 - L1_Mus1 LINE L1 -1 6566 5936 2 772 639 0 0 0 chr1 24640304 24640375 -172555057 + (TTCTC)n Simple_repeat Simple_repeat 3 73 0 2 772 279 286 15 85 chr1 24640498 24640628 -172554804 + RSINE1 SINE B4 2 122 -43 2 96 847 260 119 86 chr1 24641386 24641732 -172553700 + MTE2a LTR MaLR 6 366 -13 2 773 2186 91 18 59 chr1 24641732 24642070 -172553362 + ORR1A2 LTR MaLR 1 324 -3 2 773 847 260 119 86 chr1 24642070 24642085 -172553347 + MTE2a LTR MaLR 367 379 0 2 773 2203 113 50 116 chr1 24642090 24642512 -172552920 - ORR1B1 LTR MaLR 0 394 1 2 773 862 180 175 0 chr1 24642517 24642700 -172552732 - MTD LTR MaLR 0 419 205 2 773 228 86 0 0 chr1 24642915 24642950 -172552482 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 773 9627 165 58 24 chr1 24643480 24645599 -172549833 + Lx7 LINE L1 2097 4286 -1594 2 773 3377 175 29 129 chr1 24645592 24646577 -172548855 + Lx7 LINE L1 4792 5678 -202 2 773 36321 42 1 3 chr1 24646585 24653025 -172542407 - L1Md_T LINE L1 0 6585 62 2 773 3891 208 86 22 chr1 24653020 24653459 -172541973 + Lx7 LINE L1 5669 6137 -1559 2 773 2877 71 10 22 chr1 24653459 24653670 -172541762 - MTB LTR MaLR 0 400 195 2 773 216 67 0 0 chr1 24653670 24653700 -172541732 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 773 1032 42 6 112 chr1 24653700 24653861 -172541571 - B1_Mm SINE Alu -3 144 1 2 773 2877 71 10 22 chr1 24653861 24654053 -172541379 - MTB LTR MaLR -206 194 2 2 773 3891 208 86 22 chr1 24654053 24654628 -172540804 + Lx7 LINE L1 6138 6748 -948 2 773 561 300 47 159 chr1 24654647 24655055 -172540377 + RMER20B LTR ERVK 239 600 -27 2 773 815 246 157 11 chr1 24655339 24655626 -172539806 + Lx7 LINE L1 7013 7341 -355 2 773 826 263 24 62 chr1 24655861 24656153 -172539279 - RLTR11B LTR ERVK -169 284 4 2 773 231 247 0 0 chr1 24656187 24656276 -172539156 + G-rich Low_complexity Low_complexity 1 89 0 2 773 227 39 36 55 chr1 24656702 24656757 -172538675 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 773 272 329 158 76 chr1 24658736 24659078 -172536354 - ORR1E LTR MaLR 0 379 1 2 773 223 71 48 0 chr1 24659329 24659371 -172536061 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 773 438 354 87 0 chr1 24659453 24659614 -172535818 + B3A SINE B2 3 177 -21 2 773 3634 152 29 118 chr1 24659619 24660108 -172535324 - RMER6D LTR ERVK -5 715 218 2 773 690 47 0 0 chr1 24660108 24660194 -172535238 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 773 3634 152 29 118 chr1 24660194 24660489 -172534943 - RMER6D LTR ERVK -503 217 1 2 773 1072 169 53 0 chr1 24660489 24660696 -172534736 - RMER6-int LTR ERVK 0 3177 2960 2 773 19421 88 24 3 chr1 24660859 24663835 -172531597 - L1_Mm LINE L1 -1600 4283 1246 2 773 5407 89 31 3 chr1 24663835 24664587 -172530845 + L1_Mus1 LINE L1 5795 6567 0 2 773 21 71 0 0 chr1 24664812 24664854 -172530578 + AT_rich Low_complexity Low_complexity 1 42 0 2 773 315 262 70 56 chr1 24665525 24665739 -172529693 - Charlie5 DNA MER1_type 0 2624 2408 2 773 422 276 35 43 chr1 24666209 24666406 -172529026 + MERVK26-int LTR ERVK 4124 4298 -2252 2 773 4138 229 22 35 chr1 24666430 24667260 -172528172 + MERVK26-int LTR ERVK 5455 6273 -646 2 773 3012 20 6 9 chr1 24667260 24667607 -172527825 - ORR1A0 LTR MaLR 0 346 1 2 773 4138 229 22 35 chr1 24667607 24667738 -172527694 + MERVK26-int LTR ERVK 6274 6403 -516 2 773 1111 46 7 19 chr1 24667738 24667892 -172527540 + ORR1A3 LTR MaLR 175 326 0 2 773 192 40 0 0 chr1 24668029 24668054 -172527378 + (TTGTG)n Simple_repeat Simple_repeat 5 29 0 2 773 357 265 60 0 chr1 24668056 24668139 -172527293 - RSINE1 SINE B4 -21 144 57 2 773 1100 283 48 30 chr1 24668950 24669322 -172526110 + MTE2a LTR MaLR 1 379 0 2 773 624 271 65 5 chr1 24670127 24670327 -172525105 - B4A SINE B4 0 292 81 2 773 4084 48 8 42 chr1 24670493 24671014 -172524418 + RLTR1C LTR ERV1 1 503 0 2 773 33 0 0 0 chr1 24672019 24672052 -172523380 + AT_rich Low_complexity Low_complexity 1 33 0 2 773 495 245 19 0 chr1 24672189 24672295 -172523137 + B1_Mur1 SINE Alu 3 110 -39 2 773 1314 97 38 5 chr1 24672406 24672592 -172522840 - B2_Mm2 SINE B2 -1 194 3 2 773 1239 139 0 15 chr1 24673732 24673929 -172521503 - B2_Mm2 SINE B2 0 195 2 2 773 394 227 11 22 chr1 24673988 24674078 -172521354 + B3A SINE B2 7 95 -103 2 773 534 134 54 18 chr1 24674081 24674248 -172521184 + CT-rich Low_complexity Low_complexity 3 175 0 2 773 376 135 10 50 chr1 24674276 24674377 -172521055 + CT-rich Low_complexity Low_complexity 3 99 0 2 773 776 341 80 24 chr1 24674520 24675030 -172520402 - Arthur1 DNA Tip100 -3404 543 5 2 773 23 33 0 0 chr1 24675619 24675649 -172519783 + AT_rich Low_complexity Low_complexity 1 30 0 2 773 296 305 28 37 chr1 24675871 24675980 -172519452 + B3A SINE B2 1 108 -90 2 773 423 0 0 0 chr1 24676031 24676078 -172519354 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 773 225 394 35 24 chr1 24676575 24676744 -172518688 + LTR33 LTR ERVL 5 175 -340 2 773 1132 76 116 0 chr1 24676940 24677112 -172518320 - B2_Mm2 SINE B2 -2 193 2 2 773 2516 93 68 13 chr1 24677122 24677503 -172517929 - Lx LINE L1 -2 6652 6251 2 773 581 19 333 28 chr1 24677723 24677831 -172517601 - B2_Mm2 SINE B2 -8 187 47 2 773 1189 76 17 0 chr1 24677857 24678029 -172517403 - B2_Mm1t SINE B2 -12 181 7 2 773 6795 94 15 14 chr1 24678122 24679095 -172516337 - Lx3_Mus LINE L1 0 7009 6035 2 773 216 0 0 0 chr1 24679095 24679119 -172516313 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 2 773 6795 94 15 14 chr1 24679119 24679134 -172516298 - Lx3_Mus LINE L1 -975 6034 6020 2 773 359 0 0 0 chr1 24679175 24679223 -172516209 + L1Md_T LINE L1 6534 6581 -1 2 773 963 188 53 5 chr1 24679375 24679583 -172515849 - URR1B DNA MER1_type -6 219 2 2 773 195 42 0 0 chr1 24679964 24679988 -172515444 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 773 304 319 11 0 chr1 24680242 24680336 -172515096 + Charlie26a DNA MER1_type 37 131 -194 2 773 263 250 203 0 chr1 24680801 24680929 -172514503 + MamRep605 Unknown Unknown 98 251 -625 2 773 180 176 0 0 chr1 24681490 24681524 -172513908 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 2 773 261 0 0 0 chr1 24681799 24681828 -172513604 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 773 1256 105 16 16 chr1 24681841 24682035 -172513397 - B2_Mm2 SINE B2 -1 194 1 2 773 651 237 29 139 chr1 24682221 24682274 -172513158 + RLTR40 LTR ERVK 116 168 -649 2 773 858 49 0 296 chr1 24682274 24682477 -172512955 + B1_Mus1 SINE Alu 1 143 -5 2 773 651 237 29 139 chr1 24682477 24682703 -172512729 + RLTR40 LTR ERVK 169 364 -453 2 773 2288 116 26 28 chr1 24682847 24683236 -172512196 - ORR1B1 LTR MaLR 0 394 7 2 773 640 240 0 40 chr1 24683236 24683388 -172512044 + RMER20B LTR ERVK 1 146 -481 2 773 321 26 0 0 chr1 24683388 24683426 -172512006 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 773 882 255 69 33 chr1 24683426 24683688 -172511744 + RMER20B LTR ERVK 330 601 -26 2 773 543 282 81 57 chr1 24684527 24684853 -172510579 - MTE2b LTR MaLR -51 328 12 2 773 192 97 0 0 chr1 24685526 24685557 -172509875 + (TCCCG)n Simple_repeat Simple_repeat 2 32 0 2 773 330 143 0 0 chr1 24686430 24686493 -172508939 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 773 1205 63 7 0 chr1 24737028 24737171 -172458261 + B1_Mus1 SINE Alu 4 147 -1 2 773 956 286 130 40 chr1 24737212 24737736 -172457696 - Charlie1a DNA MER1_type -267 1188 618 2 773 1567 54 0 11 chr1 24737748 24737936 -172457496 + B2_Mm2 SINE B2 2 187 -8 2 773 281 255 183 96 chr1 24738017 24738121 -172457311 - RSINE1 SINE B4 0 165 53 2 773 855 287 113 60 chr1 24738164 24738365 -172457067 - Charlie1a DNA MER1_type -873 582 373 2 773 1447 101 16 0 chr1 24738365 24738554 -172456878 - B2_Mm2 SINE B2 -3 192 1 2 773 855 287 113 60 chr1 24738554 24738798 -172456634 - Charlie1a DNA MER1_type -1083 372 110 2 773 2256 132 129 39 chr1 24738798 24739184 -172456248 - MTC LTR MaLR 0 421 1 2 773 855 287 113 60 chr1 24739184 24739285 -172456147 - Charlie1a DNA MER1_type -1346 109 6 2 773 245 237 0 17 chr1 24739712 24739772 -172455660 + MER5B DNA MER1_type 13 71 -107 2 773 1128 67 0 0 chr1 24740038 24740173 -172455259 - B1_Mus1 SINE Alu -13 135 1 2 773 279 239 51 34 chr1 24740747 24740864 -172454568 + L1ME1 LINE L1 5842 5960 -219 2 773 430 293 81 52 chr1 24742590 24742763 -172452669 - B4A SINE B4 -113 179 2 2 773 1335 34 0 0 chr1 24742816 24742963 -172452469 + B1_Mus1 SINE Alu 1 147 -1 2 773 297 291 30 0 chr1 24743254 24743352 -172452080 + MIR SINE MIR 79 183 -25 2 773 237 247 72 24 chr1 24743667 24743750 -172451682 - MIRc SINE MIR -17 251 165 2 773 21 57 0 0 chr1 24744268 24744303 -172451129 + AT_rich Low_complexity Low_complexity 1 35 0 2 773 259 222 143 0 chr1 24744303 24744366 -172451066 - ID4_ SINE ID 0 83 12 2 773 1630 42 21 0 chr1 24744376 24744566 -172450866 - B2_Mm2 SINE B2 0 195 2 2 773 189 0 0 0 chr1 24744714 24744735 -172450697 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 773 682 146 0 10 chr1 24744968 24745072 -172450360 - MT2B LTR ERVL -342 259 157 2 773 3310 137 33 18 chr1 24745065 24745617 -172449815 - ORR1A2-int LTR MaLR -1403 560 1 2 773 2701 77 6 0 chr1 24745617 24745942 -172449490 - ORR1A2 LTR MaLR 0 327 1 2 773 1349 98 0 4 chr1 24746014 24746291 -172449141 + (TCTA)n Simple_repeat Simple_repeat 1 276 0 2 773 21 0 0 0 chr1 24747738 24747759 -172447673 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 1221 242 133 8 chr1 24748584 24748938 -172446494 + MTD LTR MaLR 1 398 -21 2 773 318 268 184 21 chr1 24749103 24749244 -172446188 - MTEa LTR MaLR -215 164 1 2 773 28 29 0 0 chr1 24750449 24750484 -172444948 + AT_rich Low_complexity Low_complexity 1 35 0 2 773 217 224 25 50 chr1 24750497 24750577 -172444855 - RSINE1 SINE B4 0 165 88 2 773 907 127 95 6 chr1 24750632 24750790 -172444642 - B2_Mm2 SINE B2 -23 172 1 2 773 387 0 0 0 chr1 24750821 24750864 -172444568 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 773 1294 21 7 0 chr1 24750864 24751007 -172444425 - B1_Mm SINE Alu -3 144 1 2 773 252 0 0 0 chr1 24751430 24751458 -172443974 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 773 1309 41 0 0 chr1 24751473 24751620 -172443812 - B1_Mus2 SINE Alu 0 147 1 2 773 30 27 0 0 chr1 24751628 24751665 -172443767 + AT_rich Low_complexity Low_complexity 1 37 0 2 773 381 22 0 0 chr1 24752031 24752077 -172443355 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 773 37 0 0 0 chr1 24752403 24752440 -172442992 + AT_rich Low_complexity Low_complexity 1 37 0 3 773 744 88 20 33 chr1 24753467 24753619 -172441813 - RMER17B LTR ERVK -495 463 314 3 773 372 294 124 50 chr1 24753874 24754157 -172441275 - Charlie1a DNA MER1_type -558 897 594 3 773 396 274 38 76 chr1 24754178 24754466 -172440966 + L1M4 LINE L1 2139 2415 -3731 3 773 261 0 0 0 chr1 24754485 24754514 -172440918 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3 773 315 314 31 5 chr1 24754722 24754823 -172440609 + AluG_3 SINE Alu 147 226 -85 3 773 414 257 38 42 chr1 24754896 24755087 -172440345 + L1M4 LINE L1 5279 5469 -975 3 773 277 267 35 0 chr1 24755272 24755358 -172440074 - MLT1A LTR MaLR -223 151 63 3 773 405 0 0 0 chr1 24755704 24755749 -172439683 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 773 26 30 0 0 chr1 24755963 24755996 -172439436 + AT_rich Low_complexity Low_complexity 1 33 0 3 773 342 315 67 0 chr1 24756919 24757068 -172438364 - L1M5 LINE L1 -2379 3767 3609 3 773 242 238 143 0 chr1 24757657 24757720 -172437712 - BC1_Mm scRNA scRNA -73 79 8 3 773 441 281 22 29 chr1 24757728 24757867 -172437565 - B1F1 SINE Alu 0 149 12 3 773 4890 105 172 3 chr1 24758064 24758821 -172436611 + RMER17D LTR ERVK 1 885 -4 3 773 233 69 0 0 chr1 24758888 24758917 -172436515 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 773 357 158 21 41 chr1 24758917 24759062 -172436370 + (TA)n Simple_repeat Simple_repeat 2 143 0 3 773 227 257 26 71 chr1 24759986 24760099 -172435333 - L1M LINE L1 -737 5425 5318 3 773 702 333 44 51 chr1 24760378 24760808 -172434624 - L1MB2 LINE L1 -188 5983 5557 3 773 414 0 0 0 chr1 24760970 24761016 -172434416 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 773 451 279 56 21 chr1 24761879 24762022 -172433410 + MIR SINE MIR 81 228 -34 3 773 423 268 31 0 chr1 24762059 24762156 -172433276 + B1F1 SINE Alu 1 100 -49 3 773 249 312 9 0 chr1 24762156 24762265 -172433167 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 773 951 161 0 80 chr1 24762284 24762446 -172432986 + B1_Mur3 SINE Alu 1 149 0 3 773 258 286 0 0 chr1 24763541 24763618 -172431814 - Lx9 LINE L1 -8 7636 7560 3 773 340 258 106 11 chr1 24763772 24763866 -172431566 - B3 SINE B2 -101 115 13 3 773 577 288 76 1 chr1 24765264 24765512 -172429920 - MLT1B LTR MaLR 0 390 102 3 773 279 310 157 31 chr1 24766364 24766720 -172428712 - Lx8 LINE L1 -32 7441 7041 3 773 492 184 0 0 chr1 24767577 24767675 -172427757 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 773 23 0 0 0 chr1 24768750 24768773 -172426659 + AT_rich Low_complexity Low_complexity 1 23 0 3 773 342 0 0 0 chr1 24769006 24769044 -172426388 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 773 566 271 30 38 chr1 24769061 24769215 -172426217 - B3A SINE B2 -34 161 19 3 773 379 326 0 0 chr1 24769211 24769297 -172426135 - B3 SINE B2 -130 86 1 3 773 231 200 0 22 chr1 24769453 24769499 -172425933 - L1MD1 LINE L1 -154 6088 6044 3 773 22 0 0 0 chr1 24769816 24769838 -172425594 + AT_rich Low_complexity Low_complexity 1 22 0 3 773 579 185 34 142 chr1 24769838 24770014 -172425418 - RSINE1 SINE B4 0 165 9 3 773 1454 50 67 0 chr1 24770028 24770208 -172425224 - B2_Mm2 SINE B2 -2 193 2 3 773 679 263 15 51 chr1 24770769 24770965 -172424467 - B3A SINE B2 -8 190 2 3 773 301 273 138 106 chr1 24771160 24771252 -172424180 + B4A SINE B4 128 216 -76 3 773 498 33 0 0 chr1 24771252 24771312 -172424120 + (GGA)n Simple_repeat Simple_repeat 2 61 0 3 773 301 273 138 106 chr1 24771312 24771346 -172424086 + B4A SINE B4 217 270 -22 3 773 180 125 0 0 chr1 24771346 24771378 -172424054 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 773 301 273 138 106 chr1 24771378 24771410 -172424022 + B4A SINE B4 271 291 -1 3 96 394 315 46 0 chr1 24772599 24772707 -172422725 + RSINE1 SINE B4 3 115 -50 3 774 297 0 0 0 chr1 24772722 24772755 -172422677 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 774 543 301 88 16 chr1 24773269 24773551 -172421881 - LTR40b LTR ERVL -70 395 82 3 774 762 119 0 0 chr1 24773556 24773690 -172421742 + (GGGA)n Simple_repeat Simple_repeat 1 134 0 3 774 1005 165 50 0 chr1 24773838 24774020 -172421412 - B3 SINE B2 -24 192 2 3 774 21 0 0 0 chr1 24775225 24775246 -172420186 + AT_rich Low_complexity Low_complexity 1 21 0 3 774 215 340 65 9 chr1 24777304 24777411 -172418021 - L2b LINE L2 -219 3156 3044 3 774 301 265 17 128 chr1 24777586 24777703 -172417729 - RMER12 LTR ERVK -469 853 750 3 774 5647 158 24 31 chr1 24778154 24779263 -172416169 + L1Md_T LINE L1 104 1205 -5411 3 774 37176 32 0 0 chr1 24779269 24783686 -172411746 + L1Md_T LINE L1 1170 5585 -298 3 774 8544 56 0 0 chr1 24783687 24784683 -172410749 + L1Md_T LINE L1 5587 6582 0 3 774 473 284 48 34 chr1 24785982 24786128 -172409304 - RSINE1 SINE B4 -17 148 1 3 774 479 273 31 99 chr1 24786257 24786448 -172408984 - MTEb LTR MaLR -199 180 3 3 774 2471 297 135 18 chr1 24786465 24787220 -172408212 - MTEb-int LTR MaLR -20 1560 714 3 774 3479 50 5 0 chr1 24787220 24787618 -172407814 - MTB LTR MaLR 0 400 1 3 774 2471 297 135 18 chr1 24787618 24787919 -172407513 - MTEb-int LTR MaLR -867 713 382 3 774 468 279 19 0 chr1 24789470 24789574 -172405858 + PB1D10 SINE Alu 10 115 -2 3 774 259 289 40 0 chr1 24789738 24789814 -172405618 - ID4 SINE ID -3 80 2 3 774 322 265 78 52 chr1 24790198 24790389 -172405043 - B3A SINE B2 -2 196 1 3 774 228 261 54 11 chr1 24790393 24790486 -172404946 - L1M5 LINE L1 -311 5868 5772 3 774 231 298 39 47 chr1 24790502 24790629 -172404803 - L1M5 LINE L1 -482 5697 5572 3 774 3146 42 3 0 chr1 24790983 24791366 -172404066 - MTA_Mm LTR MaLR -12 384 1 3 774 342 275 266 19 chr1 24791366 24791696 -172403736 - L1M5 LINE L1 -857 5289 4880 3 774 231 329 68 40 chr1 24791786 24792008 -172403424 - L1M5 LINE L1 -1382 4764 4537 3 774 31 0 0 0 chr1 24792832 24792863 -172402569 + AT_rich Low_complexity Low_complexity 1 31 0 3 774 549 241 49 35 chr1 24793111 24793253 -172402179 - B1_Mur1 SINE Alu -1 148 5 3 774 309 51 0 0 chr1 24793332 24793371 -172402061 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 774 333 0 0 0 chr1 24793371 24793407 -172402025 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 774 233 319 144 24 chr1 24793532 24793699 -172401733 + MIRb SINE MIR 9 195 -67 3 774 327 277 103 43 chr1 24794345 24794579 -172400853 + L1M5 LINE L1 2196 2443 -3772 3 774 287 262 187 0 chr1 24794624 24794731 -172400701 + MLT1E2 LTR MaLR 43 169 -458 3 774 433 213 188 47 chr1 24795313 24795441 -172399991 + B3 SINE B2 1 146 -70 3 774 246 62 0 0 chr1 24795450 24795482 -172399950 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 774 507 159 0 0 chr1 24796388 24796476 -172398956 + URR1B DNA MER1_type 137 224 -1 3 774 1022 228 20 0 chr1 24796710 24796912 -172398520 - B3 SINE B2 -10 206 1 3 774 195 100 0 0 chr1 24797175 24797205 -172398227 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 774 355 278 140 29 chr1 24797223 24797590 -172397842 - L1M4 LINE L1 -4873 2031 1582 3 774 1227 287 55 35 chr1 24797635 24798123 -172397309 - RLTR11A2 LTR ERVK -29 498 1 3 774 26 50 0 0 chr1 24798155 24798195 -172397237 + AT_rich Low_complexity Low_complexity 1 40 0 3 774 252 200 0 0 chr1 24798318 24798373 -172397059 + CT-rich Low_complexity Low_complexity 2 56 0 3 774 1098 306 123 23 chr1 24798450 24799224 -172396208 - L1M4 LINE L1 -5671 1233 383 3 774 23 0 0 0 chr1 24799472 24799495 -172395937 + AT_rich Low_complexity Low_complexity 1 23 0 3 774 441 178 0 0 chr1 24800305 24800423 -172395009 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 774 230 291 103 37 chr1 24801895 24802002 -172393430 - PB1D10 SINE Alu 0 117 4 3 774 415 48 16 16 chr1 24802139 24802202 -172393230 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 774 461 274 153 0 chr1 24802226 24802383 -172393049 + MER20 DNA MER1_type 39 219 0 3 774 29 47 0 0 chr1 24803830 24803873 -172391559 + AT_rich Low_complexity Low_complexity 1 43 0 3 774 795 246 52 176 chr1 24804367 24804787 -172390645 - ORR1D2 LTR MaLR -2 368 1 3 774 195 42 0 0 chr1 24804947 24804971 -172390461 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 774 545 174 49 39 chr1 24805981 24806083 -172389349 + URR1B DNA MER1_type 2 104 -121 3 774 1198 153 94 0 chr1 24806170 24806373 -172389059 - URR1A DNA MER1_type 0 226 5 3 774 7092 47 9 25 chr1 24806759 24807678 -172387754 - L1_Mus2 LINE L1 0 6566 5661 3 774 284 236 0 0 chr1 24809059 24809114 -172386318 + MTE2a LTR MaLR 1 55 -324 3 774 518 198 198 0 chr1 24809826 24809947 -172385485 + B1_Mus2 SINE Alu 1 145 -2 3 774 180 0 0 0 chr1 24810443 24810463 -172384969 + (T)n Simple_repeat Simple_repeat 1 20 0 3 774 31 26 0 0 chr1 24811190 24811228 -172384204 + AT_rich Low_complexity Low_complexity 1 38 0 3 774 3723 13 5 0 chr1 24811239 24811633 -172383799 - MTA_Mm LTR MaLR 0 396 1 3 774 276 333 34 17 chr1 24812131 24812250 -172383182 - L2 LINE L2 -527 2892 2772 3 774 302 297 174 7 chr1 24812416 24812565 -172382867 - L2 LINE L2 -641 2778 2605 3 774 507 215 82 75 chr1 24812669 24812815 -172382617 - B1F SINE Alu 0 149 3 3 774 297 236 63 46 chr1 24813337 24813462 -172381970 - PB1D7 SINE Alu -25 122 1 3 774 293 220 284 0 chr1 24813354 24813463 -172381969 - ID_B1 SINE B4 -4 220 81 3 774 920 123 262 6 chr1 24813487 24813659 -172381773 + B3 SINE B2 1 216 0 3 774 780 100 167 192 chr1 24813748 24813946 -172381486 - B2_Mm2 SINE B2 -2 193 1 3 774 286 80 40 0 chr1 24813950 24814000 -172381432 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 774 366 23 0 0 chr1 24814004 24814047 -172381385 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 774 1295 56 0 0 chr1 24814047 24814207 -172381225 - B2_Mm1a SINE B2 -33 160 1 3 774 292 270 110 69 chr1 24815273 24815524 -172379908 - B4A SINE B4 -7 285 6 3 774 696 261 194 16 chr1 24816307 24816560 -172378872 - MTEa LTR MaLR 0 379 82 3 774 351 65 0 0 chr1 24816564 24816610 -172378822 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 774 405 0 0 0 chr1 24816610 24816654 -172378778 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 774 500 178 83 18 chr1 24817575 24817684 -172377748 + PB1D10 SINE Alu 1 116 -1 4 774 215 323 31 20 chr1 24819255 24819353 -172376079 - B3 SINE B2 -37 179 81 4 774 847 126 189 0 chr1 24820988 24821147 -172374285 + B2_Mm2 SINE B2 4 192 -3 4 774 368 343 44 22 chr1 24821225 24821407 -172374025 + MLT1A LTR MaLR 189 374 0 4 774 21 0 0 0 chr1 24822149 24822170 -172373262 + AT_rich Low_complexity Low_complexity 1 21 0 4 774 185 0 40 0 chr1 24822509 24822534 -172372898 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 774 1225 43 14 0 chr1 24822639 24822780 -172372652 + B1_Mus2 SINE Alu 5 147 0 4 774 216 0 0 0 chr1 24822780 24822804 -172372628 + (A)n Simple_repeat Simple_repeat 1 24 0 4 774 244 286 43 0 chr1 24823300 24823370 -172372062 - ORR1E LTR MaLR -235 124 52 4 774 2452 177 92 65 chr1 24823448 24824143 -172371289 - RMER17A2 LTR ERVK 0 906 193 4 774 1748 167 44 55 chr1 24824144 24824300 -172371132 + MTD LTR MaLR 60 210 -209 4 774 1663 43 21 0 chr1 24824300 24824488 -172370944 + B2_Mm1t SINE B2 2 193 0 4 774 1748 167 44 55 chr1 24824488 24824693 -172370739 + MTD LTR MaLR 211 417 -2 4 774 372 242 19 39 chr1 24824705 24824808 -172370624 + MTD-int LTR MaLR 11 111 -1147 4 774 348 260 64 55 chr1 24824918 24825028 -172370404 + MER34 LTR ERV1 11 121 -450 4 774 248 131 0 21 chr1 24825028 24825075 -172370357 + CT-rich Low_complexity Low_complexity 2 47 0 4 774 22 0 0 0 chr1 24825565 24825587 -172369845 + AT_rich Low_complexity Low_complexity 1 22 0 4 774 2384 220 216 6 chr1 24825686 24826340 -172369092 - Lx6 LINE L1 -26 7434 6644 4 774 1596 184 108 23 chr1 24826345 24826689 -172368743 + ORR1B1 LTR MaLR 22 394 0 4 774 373 270 11 0 chr1 24826689 24826778 -172368654 - Lx6 LINE L1 -835 6625 6536 4 774 364 48 16 31 chr1 24826782 24826846 -172368586 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 774 1811 175 117 17 chr1 24826847 24827259 -172368173 - RMER16 LTR ERVK -80 453 1 4 774 375 44 0 0 chr1 24827259 24827304 -172368128 - RMER16-int LTR ERVK 0 5406 5362 4 774 1496 221 25 40 chr1 24827305 24827692 -172367740 - Lx6 LINE L1 -705 6353 5923 4 774 246 250 144 67 chr1 24827696 24827786 -172367646 + 5S rRNA rRNA 1 97 -24 4 774 851 272 134 49 chr1 24827738 24828125 -172367307 + MER34 LTR ERV1 109 528 -14 4 774 499 309 139 57 chr1 24829111 24829623 -172365809 - MLT2B3 LTR ERVL 0 554 1 4 774 220 271 2 0 chr1 24830232 24830287 -172365145 + ID4_ SINE ID 11 66 -17 4 774 532 260 73 0 chr1 24830432 24830555 -172364877 + MTEb LTR MaLR 5 136 -243 4 774 1390 297 8 16 chr1 24830579 24830952 -172364480 + MTEa LTR MaLR 1 370 -9 4 774 268 250 34 96 chr1 24831817 24831963 -172363469 - MER58C DNA MER1_type 0 215 79 4 774 256 274 48 0 chr1 24832046 24832130 -172363302 + LTR73 LTR ERV1 1 88 -484 4 774 248 280 59 81 chr1 24832207 24832343 -172363089 + LTR73 LTR ERV1 221 353 -219 4 774 1213 287 58 41 chr1 24832575 24832989 -172362443 - Lx8 LINE L1 -241 7232 6812 4 774 360 0 0 0 chr1 24833074 24833114 -172362318 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 774 503 344 58 13 chr1 24833176 24833265 -172362167 + Lx8 LINE L1 6217 6313 -1331 4 774 4228 82 17 9 chr1 24833265 24833842 -172361590 - MT2B2 LTR ERVL 0 584 3 4 774 1092 264 22 22 chr1 24833842 24834149 -172361283 + Lx8 LINE L1 6180 6488 -985 4 774 2069 140 29 6 chr1 24834149 24834493 -172360939 + Lx2 LINE L1 6645 6996 -1 4 774 465 52 0 38 chr1 24834493 24834573 -172360859 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 4 774 301 311 51 36 chr1 24834580 24834717 -172360715 + Lx8 LINE L1 6501 6639 -834 4 774 593 246 165 9 chr1 24836016 24836344 -172359088 + L1MA9 LINE L1 5928 6306 -6 4 774 285 289 24 47 chr1 24836476 24836603 -172358829 - PB1 SINE Alu -3 124 1 4 774 186 43 0 0 chr1 24837286 24837309 -172358123 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 774 527 188 181 7 chr1 24838471 24838626 -172356806 - RCHARR1 DNA MER1_type -3 971 790 4 774 29 0 0 0 chr1 24838710 24838739 -172356693 + AT_rich Low_complexity Low_complexity 1 29 0 4 774 429 231 8 100 chr1 24838739 24838859 -172356573 + MT2B LTR ERVL 155 263 -338 4 774 666 204 75 15 chr1 24838753 24838887 -172356545 + B1_Mm SINE Alu 6 147 0 4 774 530 43 57 74 chr1 24838887 24839062 -172356370 + (CAAAC)n Simple_repeat Simple_repeat 5 176 0 4 774 1172 303 71 18 chr1 24839095 24839612 -172355820 + Lx6 LINE L1 6500 7434 -26 4 774 279 133 0 0 chr1 24839617 24839662 -172355770 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 774 328 270 55 62 chr1 24839682 24839828 -172355604 + L1M2 LINE L1 2657 2801 -3342 4 774 1818 169 59 8 chr1 24839847 24840205 -172355227 + ORR1C1 LTR MaLR 3 378 0 4 774 375 314 100 92 chr1 24840256 24840537 -172354895 - B4A SINE B4 -1 291 9 4 774 434 285 88 0 chr1 24840612 24840749 -172354683 - B1F SINE Alu 0 149 1 4 774 406 304 2 19 chr1 24840752 24840932 -172354500 + L1M2 LINE L1 2874 3084 -3059 4 774 454 245 40 35 chr1 24841158 24841383 -172354049 + L1M2 LINE L1 5452 5691 -612 4 774 261 0 0 0 chr1 24841496 24841525 -172353907 + (T)n Simple_repeat Simple_repeat 1 29 0 4 774 676 196 43 50 chr1 24841711 24841735 -172353697 + ORR1D1 LTR MaLR 164 187 -187 4 774 2441 44 0 251 chr1 24841735 24842222 -172353210 + RLTR10B2 LTR ERVK 1 365 0 4 774 676 196 43 50 chr1 24842222 24842358 -172353074 + ORR1D1 LTR MaLR 188 323 -51 4 774 180 0 0 0 chr1 24842359 24842379 -172353053 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 774 1966 142 81 0 chr1 24842735 24843081 -172352351 - ORR1C1 LTR MaLR -2 376 3 4 774 288 295 38 126 chr1 24843834 24843993 -172351439 - LTR40a LTR ERVL 0 519 375 4 774 442 324 60 98 chr1 24844087 24844405 -172351027 + L1MEb LINE L1 110 415 -5721 4 774 443 279 107 22 chr1 24844588 24844907 -172350525 + L1MEb LINE L1 4275 4620 -1526 4 774 531 82 0 0 chr1 24844980 24845053 -172350379 + (TCC)n Simple_repeat Simple_repeat 3 75 0 4 774 1094 97 0 0 chr1 24845055 24845200 -172350232 - B1_Mus1 SINE Alu -2 146 2 4 774 266 333 23 34 chr1 24845228 24845336 -172350096 + AluG_3 SINE Alu 140 221 -90 4 774 470 292 55 70 chr1 24845557 24845756 -172349676 + ID_B1 SINE B4 29 224 0 4 774 1233 51 89 22 chr1 24846234 24846413 -172349019 + B2_Mm2 SINE B2 3 193 -2 4 774 1165 226 80 13 chr1 24846417 24846794 -172348638 - L1_Rod LINE L1 -314 5533 5132 4 774 24 53 0 0 chr1 24846888 24846926 -172348506 + AT_rich Low_complexity Low_complexity 1 38 0 4 774 23 0 0 0 chr1 24846981 24847004 -172348428 + AT_rich Low_complexity Low_complexity 1 23 0 4 774 713 273 96 0 chr1 24847026 24847224 -172348208 + ID_B1 SINE B4 1 217 -7 4 774 695 194 0 14 chr1 24847238 24847374 -172348058 + B1_Mus1 SINE Alu 5 139 -9 4 774 285 29 0 0 chr1 24847374 24847408 -172348024 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 774 315 0 0 0 chr1 24847516 24847551 -172347881 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 774 643 321 118 39 chr1 24848638 24848943 -172346489 + RCHARR1 DNA MER1_type 16 344 -630 4 774 240 127 82 0 chr1 24849057 24849167 -172346265 + (TA)n Simple_repeat Simple_repeat 1 119 0 4 774 209 120 35 46 chr1 24849200 24849287 -172346145 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 774 1598 222 87 46 chr1 24849353 24849769 -172345663 + RLTR40 LTR ERVK 1 446 -371 4 774 1968 115 43 31 chr1 24849769 24850091 -172345341 - ORR1A3 LTR MaLR 0 326 1 4 774 1598 222 87 46 chr1 24850091 24850156 -172345276 + RLTR40 LTR ERVK 447 502 -315 4 774 277 309 0 0 chr1 24850177 24850258 -172345174 + RMER20B LTR ERVK 45 125 -502 4 774 291 224 48 20 chr1 24850614 24850747 -172344685 + RLTR40 LTR ERVK 506 725 -92 4 774 742 300 128 45 chr1 24850814 24851149 -172344283 - MTE2b LTR MaLR -11 368 6 4 774 28 0 0 0 chr1 24852270 24852298 -172343134 + AT_rich Low_complexity Low_complexity 1 28 0 4 774 440 191 11 6 chr1 24852572 24852661 -172342771 - ORR1B1 LTR MaLR 0 374 289 4 774 238 281 145 106 chr1 24852670 24852849 -172342583 + RLTR23 LTR ERV1 84 269 -161 4 774 1681 165 74 3 chr1 24852849 24853147 -172342285 - ORR1B1 LTR MaLR -75 319 1 4 774 214 292 0 172 chr1 24853485 24853601 -172341831 - B1F1 SINE Alu -53 96 1 4 774 415 302 23 108 chr1 24853601 24853631 -172341801 - B4A SINE B4 -218 74 56 4 774 888 296 50 13 chr1 24853665 24853924 -172341508 - B4A SINE B4 -35 257 1 4 774 261 128 0 0 chr1 24854695 24854742 -172340690 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 774 522 356 93 33 chr1 24855324 24855777 -172339655 + L2a LINE L2 2947 3426 0 4 774 2746 152 93 75 chr1 24855839 24856517 -172338915 + RMER6C LTR ERVK 1 690 0 4 774 1340 283 21 16 chr1 24856652 24857029 -172338403 - MTEa LTR MaLR 0 379 1 4 774 661 162 17 11 chr1 24857365 24857540 -172337892 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 774 202 206 0 0 chr1 24857544 24857578 -172337854 + (CATG)n Simple_repeat Simple_repeat 1 34 0 4 774 219 273 152 83 chr1 24857674 24857806 -172337626 + MIR SINE MIR 109 249 -13 4 774 10867 81 12 27 chr1 24858563 24860848 -172334584 + L1Md_F LINE L1 511 2758 -3125 4 774 2624 61 3 3 chr1 24860848 24861179 -172334253 - IAPEY_LTR LTR ERVK 0 385 55 4 774 20708 46 3 7 chr1 24861179 24863900 -172331532 - IAPEy-int LTR ERVK 0 7513 4804 4 774 6357 100 33 12 chr1 24863900 24864925 -172330507 - IAPEy-int LTR ERVK -6455 1058 12 4 774 2831 62 3 0 chr1 24864933 24865290 -172330142 - IAPEY_LTR LTR ERVK -27 358 1 4 774 21609 51 1 0 chr1 24865290 24868123 -172327309 + L1Md_F LINE L1 2753 5586 -297 4 774 8084 50 1 1 chr1 24868123 24869118 -172326314 + L1Md_F2 LINE L1 5587 6581 -1 4 774 22 0 0 0 chr1 24869140 24869162 -172326270 + GC_rich Low_complexity Low_complexity 1 22 0 4 774 411 259 43 23 chr1 24869401 24869540 -172325892 - MT2A LTR ERVL -162 313 94 4 774 358 317 46 38 chr1 24869547 24869678 -172325754 - MT2A LTR ERVL -401 132 1 4 774 745 198 77 57 chr1 24870078 24870270 -172325162 - ORR1C2 LTR MaLR 0 384 185 4 774 1098 87 0 0 chr1 24870270 24870443 -172324989 + (GA)n Simple_repeat Simple_repeat 2 174 0 4 774 745 198 77 57 chr1 24870443 24870459 -172324973 - ORR1C2 LTR MaLR -200 184 172 4 774 469 108 19 19 chr1 24870459 24870563 -172324869 + (CAGAGA)n Simple_repeat Simple_repeat 3 106 0 4 774 341 181 32 7 chr1 24870585 24870651 -172324781 - ORR1C2 LTR MaLR -190 194 127 4 774 1281 97 17 0 chr1 24870651 24870826 -172324606 + B2_Mm2 SINE B2 3 180 -15 4 774 192 152 0 0 chr1 24870838 24870871 -172324561 + GA-rich Low_complexity Low_complexity 1 33 0 4 774 341 229 11 204 chr1 24870873 24871049 -172324383 - ORR1C2 LTR MaLR -232 142 1 4 774 21 57 0 0 chr1 24871317 24871352 -172324080 + AT_rich Low_complexity Low_complexity 1 35 0 4 774 189 0 0 0 chr1 24872265 24872286 -172323146 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 774 198 0 0 0 chr1 24872652 24872674 -172322758 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 774 1725 235 88 26 chr1 24872678 24873098 -172322334 - MT2A LTR ERVL -87 446 1 4 774 234 317 92 69 chr1 24873132 24873305 -172322127 + MIRb SINE MIR 82 258 -10 5 774 213 39 0 0 chr1 24873862 24873888 -172321544 + (A)n Simple_repeat Simple_repeat 1 26 0 5 774 347 274 72 121 chr1 24874040 24874206 -172321226 + B3A SINE B2 35 192 -6 5 774 659 12 0 12 chr1 24874595 24874676 -172320756 + (CCAA)n Simple_repeat Simple_repeat 2 81 0 5 774 349 338 125 0 chr1 24874678 24874838 -172320594 + B3A SINE B2 3 182 -16 5 774 201 108 0 0 chr1 24876366 24876403 -172319029 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 774 180 111 0 0 chr1 24876474 24876501 -172318931 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 774 297 110 73 0 chr1 24877425 24877507 -172317925 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 774 469 226 116 0 chr1 24877710 24877856 -172317576 + MER5A1 DNA MER1_type 1 163 -3 5 774 25 51 0 0 chr1 24878465 24878504 -172316928 + AT_rich Low_complexity Low_complexity 1 39 0 5 774 326 216 58 10 chr1 24878560 24878663 -172316769 + MER53 DNA hAT 70 177 -16 5 774 340 135 81 0 chr1 24878598 24878672 -172316760 - MER53 DNA hAT -98 95 16 5 774 292 276 13 26 chr1 24878730 24878808 -172316624 - ID4 SINE ID -2 81 5 5 774 22 35 0 0 chr1 24879730 24879759 -172315673 + AT_rich Low_complexity Low_complexity 1 29 0 5 774 958 268 99 13 chr1 24879947 24880401 -172315031 + L1MA5 LINE L1 4564 5056 -1087 5 774 470 185 23 8 chr1 24880443 24880574 -172314858 + (TA)n Simple_repeat Simple_repeat 1 133 0 5 774 236 333 49 46 chr1 24880653 24880769 -172314663 + L1_Mur3 LINE L1 5147 5262 -618 5 774 670 267 72 0 chr1 24880769 24880964 -172314468 + B3 SINE B2 2 210 -6 5 774 236 333 49 46 chr1 24880964 24881152 -172314280 + L1_Mur3 LINE L1 5263 5452 -428 5 774 449 312 89 27 chr1 24881167 24881539 -172313893 + L1MA5 LINE L1 5542 5936 -364 5 774 225 0 0 0 chr1 24881542 24881567 -172313865 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 774 948 240 202 24 chr1 24882137 24882448 -172312984 - MTD LTR MaLR 0 419 48 5 774 1539 231 77 19 chr1 24882448 24882810 -172312622 + MTC LTR MaLR 1 383 -38 5 774 207 100 0 0 chr1 24883143 24883173 -172312259 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 774 2694 186 40 14 chr1 24883242 24883929 -172311503 - L1Md_F LINE L1 -5469 1068 307 5 774 3353 35 5 0 chr1 24883929 24884323 -172311109 - MTA_Mm LTR MaLR 0 396 1 5 774 1649 246 121 79 chr1 24884323 24884536 -172310896 - L1Md_F LINE L1 -6193 348 164 5 774 261 0 0 0 chr1 24885192 24885221 -172310211 + (T)n Simple_repeat Simple_repeat 1 29 0 5 774 307 308 107 45 chr1 24885363 24885540 -172309892 - L1ME2 LINE L1 -272 5892 5705 5 774 3364 85 22 0 chr1 24885693 24886282 -172309150 - L1_Mus1 LINE L1 0 6567 6105 5 774 668 13 0 0 chr1 24886300 24886378 -172309054 - L1Md_F3 LINE L1 -129 6455 6378 5 774 1799 97 15 0 chr1 24886378 24886646 -172308786 - L1_Mm LINE L1 -771 5112 4841 5 774 683 267 11 32 chr1 24886857 24887043 -172308389 - B3A SINE B2 -15 183 2 5 774 211 28 27 27 chr1 24887146 24887183 -172308249 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 774 745 265 64 47 chr1 24887479 24887675 -172307757 - L1MC3 LINE L1 -44 7741 7549 5 774 1015 109 108 6 chr1 24887675 24887851 -172307581 - B2_Mm2 SINE B2 -1 194 1 5 774 745 291 72 41 chr1 24887851 24888082 -172307350 - L1MC3 LINE L1 -239 7756 7393 5 774 356 348 166 16 chr1 24888231 24888418 -172307014 + Tigger7 DNA MER2_type 2 216 -2275 5 774 247 115 0 3 chr1 24889586 24889623 -172305809 - MLT2D LTR ERVL 0 556 521 5 774 378 61 0 0 chr1 24889623 24889672 -172305760 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 774 311 145 14 0 chr1 24889680 24889749 -172305683 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 774 1264 178 72 120 chr1 24889775 24890173 -172305259 - MT2A LTR ERVL -81 503 2 5 774 1155 192 5 14 chr1 24890292 24890508 -172304924 + URR1B DNA MER1_type 10 223 -2 5 774 2205 156 59 8 chr1 24890662 24891049 -172304383 - MTC LTR MaLR -14 407 1 5 774 243 61 0 0 chr1 24891744 24891777 -172303655 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 774 3027 71 8 2 chr1 24891860 24892254 -172303178 + MTA_Mm LTR MaLR 1 396 0 5 774 21 36 0 0 chr1 24892291 24892319 -172303113 + AT_rich Low_complexity Low_complexity 1 28 0 5 774 362 150 0 0 chr1 24892362 24892422 -172303010 + B1_Mur2 SINE Alu 90 149 0 5 774 402 147 0 0 chr1 24892422 24892490 -172302942 + (A)n Simple_repeat Simple_repeat 1 68 0 5 774 424 281 157 0 chr1 24892540 24892693 -172302739 + MER20 DNA MER1_type 42 218 -1 5 774 472 306 145 5 chr1 24893475 24893675 -172301757 + MLT1F LTR MaLR 321 548 0 5 774 4376 78 5 25 chr1 24894204 24894852 -172300580 + L1Md_F2 LINE L1 288 922 -5600 5 774 31306 69 1 1 chr1 24894845 24899194 -172296238 + L1Md_F2 LINE L1 1237 5589 -297 5 774 7851 56 9 2 chr1 24899194 24900182 -172295250 + L1Md_F2 LINE L1 5590 6584 -1 5 774 1449 249 16 19 chr1 24900593 24900966 -172294466 + ORR1D1 LTR MaLR 1 372 -2 5 774 484 335 37 16 chr1 24901008 24901196 -172294236 + B3A SINE B2 6 197 -1 5 774 742 220 7 7 chr1 24901237 24901379 -172294053 + B1_Mur2 SINE Alu 1 142 -7 5 774 306 0 0 0 chr1 24901792 24901826 -172293606 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 774 298 291 24 64 chr1 24902414 24902539 -172292893 + MIR SINE MIR 138 257 -5 5 774 297 0 0 0 chr1 24902961 24902994 -172292438 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 774 1188 266 144 5 chr1 24903300 24903667 -172291765 - MTD LTR MaLR -1 418 1 5 775 22 0 0 0 chr1 24903899 24903921 -172291511 + AT_rich Low_complexity Low_complexity 1 22 0 5 775 4166 178 46 73 chr1 24904865 24905869 -172289563 - RLTR25A LTR ERVK -8 1020 1 5 775 830 288 85 41 chr1 24906075 24906415 -172289017 + MLT1C LTR MaLR 82 436 -31 5 775 381 292 53 148 chr1 24909062 24909251 -172286181 - B3 SINE B2 -30 186 16 5 775 874 348 25 3 chr1 24909498 24909824 -172285608 + MLT1A0 LTR MaLR 25 357 -8 5 775 905 125 0 7 chr1 24909826 24909979 -172285453 + (GGAA)n Simple_repeat Simple_repeat 3 154 0 5 775 4388 10 0 0 chr1 24910088 24910570 -172284862 + LTRIS_Mm LTR ERV1 1 482 0 5 775 1123 266 107 21 chr1 24911162 24911489 -172283943 - ORR1E LTR MaLR 0 359 5 5 775 21 57 0 0 chr1 24911944 24911979 -172283453 + AT_rich Low_complexity Low_complexity 1 35 0 5 775 11737 138 18 26 chr1 24912031 24914595 -172280837 - L1_Mus2 LINE L1 0 6566 4035 5 775 6795 129 22 72 chr1 24914588 24914951 -172280481 - L1_Mus2 LINE L1 -3425 2458 2100 5 775 557 63 25 0 chr1 24914951 24915030 -172280402 + B1_Mur4 SINE Alu 70 150 0 5 775 6795 129 22 72 chr1 24915030 24916575 -172278857 - L1_Mus2 LINE L1 -3425 2099 571 5 775 1269 168 170 49 chr1 24916575 24916945 -172278487 - RLTR9F LTR ERVK 0 415 1 5 775 2982 188 62 31 chr1 24916945 24917069 -172278363 - L1_Mus2 LINE L1 -6046 570 509 5 775 332 233 10 14 chr1 24917107 24917210 -172278222 - L1VL2 LINE L1 -6150 268 179 5 775 400 321 88 19 chr1 24917326 24917485 -172277947 + MER58A DNA MER1_type 46 311 -30 5 775 34 0 0 0 chr1 24917858 24917892 -172277540 + AT_rich Low_complexity Low_complexity 1 34 0 5 775 543 296 16 16 chr1 24917999 24918181 -172277251 - Lx8 LINE L1 -136 7337 7156 5 775 423 278 41 10 chr1 24918200 24918298 -172277134 - B1F2 SINE Alu -48 101 1 5 775 224 368 10 59 chr1 24918216 24918317 -172277115 - B4 SINE B4 -125 167 72 5 775 1757 152 78 58 chr1 24919077 24919510 -172275922 + RMER10A LTR ERVL 1 442 0 5 775 27 0 0 0 chr1 24919629 24919656 -172275776 + AT_rich Low_complexity Low_complexity 1 27 0 5 775 755 271 93 78 chr1 24919680 24919819 -172275613 - L1MA5A LINE L1 -329 5968 5808 5 775 483 18 0 0 chr1 24919819 24919875 -172275557 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 775 755 271 93 78 chr1 24919875 24920088 -172275344 - L1MA5A LINE L1 -490 5807 5588 5 775 1110 104 0 0 chr1 24920088 24920251 -172275181 + (TTC)n Simple_repeat Simple_repeat 1 163 0 5 775 755 271 93 78 chr1 24920251 24920510 -172274922 - L1MA5A LINE L1 -710 5587 5348 5 775 403 322 17 17 chr1 24920657 24920774 -172274658 - B1_Mur3 SINE Alu -31 118 2 5 775 881 128 0 43 chr1 24920810 24920998 -172274434 + CT-rich Low_complexity Low_complexity 1 180 0 5 775 279 0 0 0 chr1 24921117 24921148 -172274284 + (T)n Simple_repeat Simple_repeat 1 31 0 5 775 318 209 196 0 chr1 24921148 24921301 -172274131 - L1MA5A LINE L1 -941 5202 5020 5 775 2509 152 37 7 chr1 24921813 24922271 -172273161 + Lx4B LINE L1 6307 6778 -280 5 775 459 63 0 0 chr1 24922272 24922335 -172273097 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 775 648 197 16 8 chr1 24922339 24922462 -172272970 + B1_Mur4 SINE Alu 26 149 -1 5 775 1678 188 104 3 chr1 24922931 24923278 -172272154 - RLTR14 LTR ERV1 0 382 1 5 775 666 0 0 0 chr1 24924220 24924294 -172271138 + (TCTCC)n Simple_repeat Simple_repeat 5 78 0 5 775 345 278 96 0 chr1 24924529 24924644 -172270788 + Charlie9 DNA MER1_type 1 126 -2631 5 775 1919 131 44 6 chr1 24925051 24925366 -172270066 - ORR1A4 LTR MaLR 0 329 3 5 775 21 36 0 0 chr1 24926133 24926161 -172269271 + AT_rich Low_complexity Low_complexity 1 28 0 5 775 525 104 94 0 chr1 24926161 24926257 -172269175 - L1Md_F2 LINE L1 -14 6568 6464 5 775 528 101 0 0 chr1 24926259 24926348 -172269084 + (T)n Simple_repeat Simple_repeat 1 89 0 5 775 270 173 13 26 chr1 24926432 24926509 -172268923 + CT-rich Low_complexity Low_complexity 1 76 0 5 775 221 179 12 37 chr1 24927201 24927282 -172268150 + (TAA)n Simple_repeat Simple_repeat 2 80 0 5 775 251 397 19 29 chr1 24928718 24928928 -172266504 + Tigger5 DNA MER2_type 5 212 -2194 5 775 984 164 0 0 chr1 24929014 24929191 -172266241 + CT-rich Low_complexity Low_complexity 2 178 0 5 775 227 321 0 0 chr1 24929216 24929269 -172266163 + Tigger5 DNA MER2_type 2348 2400 -6 5 775 2878 59 0 0 chr1 24929605 24929961 -172265471 + L1_Mus1 LINE L1 6212 6567 0 5 775 382 340 38 29 chr1 24930083 24930292 -172265140 - B4A SINE B4 0 292 82 5 775 423 0 0 0 chr1 24930823 24930870 -172264562 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 775 498 246 8 17 chr1 24930870 24930990 -172264442 - B4A SINE B4 -27 265 147 5 775 209 327 114 0 chr1 24931381 24931520 -172263912 + MIR SINE MIR 4 159 -109 5 775 3959 94 9 16 chr1 24931553 24932128 -172263304 - L1_Mus3 LINE L1 -4 6634 6064 6 775 2859 128 4 0 chr1 24932128 24932587 -172262845 + L1_Mm LINE L1 4757 5217 -666 6 775 699 101 0 0 chr1 24933084 24933203 -172262229 + (GA)n Simple_repeat Simple_repeat 1 119 0 6 775 2935 236 107 13 chr1 24933343 24934458 -172260974 + RMER1B Other Other 151 1046 -20 6 775 444 183 0 0 chr1 24934468 24934561 -172260871 + GA-rich Low_complexity Low_complexity 2 94 0 6 775 1242 100 0 0 chr1 24934562 24934742 -172260690 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 775 28 0 0 0 chr1 24935903 24935931 -172259501 + AT_rich Low_complexity Low_complexity 1 28 0 6 775 276 267 7 36 chr1 24936066 24936206 -172259226 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 775 583 255 14 14 chr1 24936364 24936507 -172258925 - B3 SINE B2 -6 210 68 6 775 3256 159 6 57 chr1 24936672 24937340 -172258092 + L1_Mm LINE L1 5070 5703 -180 6 775 3614 115 0 23 chr1 24937357 24937966 -172257466 - Lx4B LINE L1 -1137 5921 5322 6 775 1432 259 16 8 chr1 24937985 24938433 -172256999 - Lx9 LINE L1 -1712 5932 5443 6 775 21 36 0 0 chr1 24938451 24938479 -172256953 + AT_rich Low_complexity Low_complexity 1 28 0 6 775 6710 49 2 2 chr1 24938547 24939412 -172256020 - L1Md_F2 LINE L1 -2 6580 5716 6 775 6641 60 0 1 chr1 24939409 24940284 -172255148 + L1Md_F2 LINE L1 4883 5756 -127 6 775 1905 220 41 71 chr1 24940281 24940472 -172254960 - Lx9 LINE L1 -389 5458 5271 6 775 1364 264 94 10 chr1 24940472 24940855 -172254577 - MTD LTR MaLR -2 417 3 6 775 1905 220 41 71 chr1 24940855 24941364 -172254068 - Lx9 LINE L1 -577 5270 4779 6 775 1612 311 46 26 chr1 24941367 24942103 -172253329 + Lx9 LINE L1 6550 7300 -344 6 775 773 21 11 0 chr1 24942200 24942295 -172253137 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 6 775 425 378 76 36 chr1 24942512 24942762 -172252670 + MT2A LTR ERVL 162 421 -112 6 775 227 127 78 16 chr1 24942781 24942845 -172252587 + MLT2B1 LTR ERVL 500 567 0 6 775 304 239 32 81 chr1 24942911 24943034 -172252398 - MIR SINE MIR -33 229 113 6 775 3670 174 122 5 chr1 24943408 24943625 -172251807 + L1_Mur2 LINE L1 429 688 -6398 6 775 1196 34 0 20 chr1 24943625 24943775 -172251657 + B1_Mm SINE Alu 1 147 0 6 775 6861 133 54 29 chr1 24943775 24945085 -172250347 + L1_Mur2 LINE L1 689 2050 -3827 6 775 360 0 0 0 chr1 24945085 24945125 -172250307 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 775 6861 111 18 42 chr1 24945125 24945572 -172249860 + L1_Mur2 LINE L1 2051 2468 -3409 6 775 4198 214 89 12 chr1 24945569 24946118 -172249314 + Lx4A LINE L1 4733 5297 -583 6 775 878 121 133 6 chr1 24946118 24946276 -172249156 + B2_Mm1t SINE B2 2 179 -14 6 775 4198 149 28 11 chr1 24946276 24947079 -172248353 + Lx4A LINE L1 5298 6170 -888 6 775 246 32 0 0 chr1 24947080 24947111 -172248321 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 6 775 3877 151 54 33 chr1 24947125 24947850 -172247582 + Lx4A LINE L1 6319 7058 0 6 775 187 73 48 24 chr1 24948082 24948124 -172247308 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 6 775 666 68 0 0 chr1 24948848 24948936 -172246496 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 6 775 448 254 377 25 chr1 24949000 24949196 -172246236 - B4A SINE B4 -20 272 8 6 775 26777 69 105 1 chr1 24949230 24954154 -172241278 - L1Md_F2 LINE L1 -13 6572 996 6 775 388 188 0 10 chr1 24954254 24954351 -172241081 - L1MA5 LINE L1 -99 6201 6106 6 775 701 32 0 0 chr1 24954379 24954472 -172240960 - L1Md_T LINE L1 0 6582 6490 6 775 3008 200 12 3 chr1 24954472 24955128 -172240304 - L1Md_A LINE L1 -5606 1118 457 6 775 390 91 0 0 chr1 24955275 24955330 -172240102 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 775 395 350 0 16 chr1 24955367 24955489 -172239943 - B4A SINE B4 -56 236 117 6 775 336 340 45 27 chr1 24955908 24956020 -172239412 + PB1 SINE Alu 2 115 -12 6 775 387 0 0 0 chr1 24956380 24956423 -172239009 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 775 389 93 0 26 chr1 24956839 24956916 -172238516 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 6 775 613 148 20 26 chr1 24956929 24957082 -172238350 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 6 775 1249 284 48 10 chr1 24957353 24957769 -172237663 + MLT1C LTR MaLR 28 459 -8 6 775 770 293 99 34 chr1 24957857 24958090 -172237342 + B4A SINE B4 44 291 -1 6 775 2848 276 106 42 chr1 24959311 24960435 -172234997 + Lx8 LINE L1 6202 7397 -76 6 775 202 368 55 30 chr1 24960696 24960895 -172234537 - L3b LINE CR1 -207 275 72 6 775 351 366 103 11 chr1 24962722 24963070 -172232362 - L2 LINE L2 -540 2879 2500 6 775 3495 129 16 27 chr1 24963094 24963653 -172231779 - RMER2 LTR ERV1 -14 553 1 6 775 1448 237 121 0 chr1 24963928 24964266 -172231166 - MTD LTR MaLR -14 405 27 6 775 1521 240 93 12 chr1 24964266 24964696 -172230736 - Lx5 LINE L1 -751 6299 5835 6 775 255 61 0 0 chr1 24964961 24964994 -172230438 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 775 3858 153 102 67 chr1 24965111 24965354 -172230078 + RMER21B LTR ERV1 1 262 -580 6 775 6825 32 0 0 chr1 24965354 24966153 -172229279 + L1Md_T LINE L1 5784 6582 0 6 775 3858 153 102 67 chr1 24966153 24966713 -172228719 + RMER21B LTR ERV1 263 831 -11 6 775 963 106 0 0 chr1 24967019 24967161 -172228271 + (TTTC)n Simple_repeat Simple_repeat 4 145 0 6 775 2086 209 53 45 chr1 24967537 24968043 -172227389 + RLTR11A2 LTR ERVK 18 527 0 6 775 244 159 31 31 chr1 24968234 24968327 -172227105 + T-rich Low_complexity Low_complexity 1 93 0 6 775 1749 194 137 39 chr1 24968565 24968610 -172226822 + Lx7 LINE L1 2017 2057 -3823 6 775 270 95 0 0 chr1 24968610 24968652 -172226780 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 775 1749 194 137 39 chr1 24968652 24968782 -172226650 + Lx7 LINE L1 2058 2199 -3681 6 775 3872 60 0 4 chr1 24968782 24969266 -172226166 - L1_Mus1 LINE L1 0 6567 6086 6 775 1749 194 137 39 chr1 24969266 24969658 -172225774 + Lx7 LINE L1 2200 2641 -3239 6 775 9636 157 82 31 chr1 24969653 24971522 -172223910 + Lx7 LINE L1 3617 5601 -279 6 775 3138 73 2 0 chr1 24971522 24971921 -172223511 + MTB LTR MaLR 1 400 0 6 775 9636 201 70 25 chr1 24971921 24972850 -172222582 + Lx7 LINE L1 5602 6574 -1122 6 775 564 209 115 0 chr1 24972834 24972973 -172222459 + Lx7 LINE L1 6780 6934 -762 6 775 204 179 0 25 chr1 24973523 24973563 -172221869 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 775 310 333 19 29 chr1 24973907 24974012 -172221420 + MIRb SINE MIR 81 184 -84 6 775 1813 198 70 12 chr1 24975450 24975793 -172219639 - MTD LTR MaLR -36 383 21 6 775 387 336 0 56 chr1 24976442 24976584 -172218848 - ID_B1 SINE B4 -3 221 88 6 775 450 0 0 0 chr1 24976688 24976738 -172218694 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 775 180 0 0 0 chr1 24976738 24976757 -172218675 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 775 307 298 0 19 chr1 24977905 24978011 -172217421 + PB1D7 SINE Alu 1 104 -16 6 775 573 286 17 11 chr1 24978026 24978206 -172217226 + B3A SINE B2 2 182 -16 6 775 7303 74 5 7 chr1 24978227 24979812 -172215620 - L1_Mus1 LINE L1 0 6567 4986 6 775 436 221 210 25 chr1 24979948 24980079 -172215353 + B2_Mm1t SINE B2 1 165 -28 6 775 207 0 0 0 chr1 24980079 24980102 -172215330 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 775 436 221 210 25 chr1 24980102 24980132 -172215300 + B2_Mm1t SINE B2 166 191 -2 6 775 202 256 75 0 chr1 24980276 24980436 -172214996 + (TA)n Simple_repeat Simple_repeat 2 173 0 6 775 388 275 57 61 chr1 24980982 24981181 -172214251 + RMER10A LTR ERVL 18 319 -123 6 775 369 0 0 0 chr1 24981181 24981222 -172214210 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 775 388 261 60 89 chr1 24981222 24981321 -172214111 + RMER10A LTR ERVL 320 423 -19 6 775 387 0 0 0 chr1 24982410 24982453 -172212979 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 6 775 1951 194 80 9 chr1 24982649 24983097 -172212335 + Lx9 LINE L1 7139 7618 -26 6 775 284 184 13 13 chr1 24983100 24983177 -172212255 + A-rich Low_complexity Low_complexity 2 78 0 6 775 409 265 58 7 chr1 24983805 24983942 -172211490 + MER67C LTR ERV1 318 461 -250 6 775 306 264 35 70 chr1 24983952 24984066 -172211366 - PB1D7 SINE Alu -2 118 9 6 775 291 291 25 0 chr1 24984002 24984081 -172211351 - ID_B1 SINE B4 -71 153 73 6 775 653 264 142 37 chr1 24984128 24984396 -172211036 - Lx2B LINE L1 -19 6981 6686 6 775 347 287 36 65 chr1 24984417 24984585 -172210847 + MER67C LTR ERV1 459 621 -90 6 775 324 0 0 0 chr1 24984868 24984904 -172210528 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 775 450 0 0 0 chr1 24985083 24985133 -172210299 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 6 775 406 249 391 7 chr1 24985954 24986100 -172209332 + ID_B1 SINE B4 7 208 -16 6 775 388 378 64 48 chr1 24986099 24986410 -172209022 + MLT1A1 LTR MaLR 93 408 0 6 775 756 107 0 0 chr1 24986556 24986668 -172208764 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 6 775 32315 79 3 8 chr1 24986668 24988015 -172207417 - L1Md_F2 LINE L1 -1 6581 5244 6 775 180 0 0 0 chr1 24988015 24988035 -172207397 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 775 32315 85 11 11 chr1 24988035 24992859 -172202573 - L1Md_F2 LINE L1 -640 5243 415 6 775 1102 309 100 11 chr1 24993636 24994097 -172201335 - RMER5 LTR ERV1 0 534 33 6 775 267 31 0 0 chr1 24994244 24994276 -172201156 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 775 562 317 61 0 chr1 24995024 24995188 -172200244 - MER58B DNA MER1_type 0 341 173 6 775 206 390 24 8 chr1 24995335 24995459 -172199973 + MIR3 SINE MIR 58 183 -25 6 775 2007 126 29 32 chr1 24995739 24996150 -172199282 - RMER17C LTR ERVK 0 410 1 6 775 1154 68 0 13 chr1 24996336 24996486 -172198946 + B1_Mus1 SINE Alu 1 148 0 6 775 570 303 65 39 chr1 24996496 24996726 -172198706 - MER58B DNA MER1_type -104 237 2 6 775 270 0 0 0 chr1 24997813 24997843 -172197589 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 775 534 343 102 49 chr1 24997954 24998239 -172197193 + MLT1F2 LTR MaLR 261 560 0 6 775 1052 131 6 0 chr1 24998374 24998549 -172196883 + (TTTTC)n Simple_repeat Simple_repeat 4 179 0 6 775 426 121 0 0 chr1 24998549 24998615 -172196817 + (TCCCC)n Simple_repeat Simple_repeat 4 69 0 6 775 180 0 0 0 chr1 24998790 24998810 -172196622 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 775 686 180 6 0 chr1 24998969 24999147 -172196285 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 775 23 54 0 0 chr1 24999463 24999500 -172195932 + AT_rich Low_complexity Low_complexity 1 37 0 6 775 346 66 49 0 chr1 25000046 25000107 -172195325 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 1 775 2912 154 8 34 chr1 25000375 25000911 -172194521 - RLTR28 LTR ERVL -2 522 1 2 775 185 200 0 32 chr1 25000948 25001010 -172194422 + (TATG)n Simple_repeat Simple_repeat 4 63 0 3 775 722 294 37 40 chr1 25001251 25001524 -172193908 + RMER15 LTR ERVL 304 575 0 4 775 216 276 0 0 chr1 25001525 25001583 -172193849 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 5 775 2391 142 27 40 chr1 25001610 25002059 -172193373 + RLTR28 LTR ERVL 79 521 -3 6 775 349 296 57 44 chr1 25002107 25002266 -172193166 + MIR SINE MIR 94 254 -8 7 775 465 313 117 0 chr1 25002347 25002510 -172192922 + B3A SINE B2 1 182 -16 8 775 195 164 0 48 chr1 25002670 25002753 -172192679 + T-rich Low_complexity Low_complexity 5 83 0 9 775 2092 159 41 31 chr1 25003022 25003410 -172192022 + ORR1B1 LTR MaLR 1 392 -2 1 775 23 33 0 0 chr1 25004167 25004197 -172191235 + AT_rich Low_complexity Low_complexity 1 30 0 1 775 314 263 21 0 chr1 25004596 25004691 -172190741 - Lx9 LINE L1 -209 7435 7339 1 775 345 140 0 0 chr1 25004693 25004750 -172190682 + (CAT)n Simple_repeat Simple_repeat 1 57 0 1 775 1706 254 11 46 chr1 25004765 25004908 -172190524 + MTD LTR MaLR 1 143 -276 1 775 2522 162 2 9 chr1 25004908 25005332 -172190100 - MTC LTR MaLR 0 421 1 1 775 1706 254 11 46 chr1 25005332 25005622 -172189810 + MTD LTR MaLR 144 419 0 1 775 2044 285 86 47 chr1 25005623 25005842 -172189590 - Lx9 LINE L1 -325 7319 7105 1 775 274 0 73 0 chr1 25005842 25005883 -172189549 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 775 1026 117 0 0 chr1 25005883 25006020 -172189412 - B1_Mus2 SINE Alu -9 138 2 1 775 2044 285 86 47 chr1 25006020 25006767 -172188665 - Lx9 LINE L1 -540 7104 6315 1 775 458 17 17 0 chr1 25007569 25007628 -172187804 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 775 473 282 81 47 chr1 25007635 25007784 -172187648 - B3A SINE B2 -42 156 3 1 775 25 0 0 0 chr1 25008366 25008391 -172187041 + AT_rich Low_complexity Low_complexity 1 25 0 2 775 4327 129 15 6 chr1 25009351 25010021 -172185411 - Lx LINE L1 -6 6648 5973 2 775 409 280 37 25 chr1 25010617 25010778 -172184654 + MER5A1 DNA MER1_type 1 163 -3 2 775 978 248 72 14 chr1 25011228 25011506 -172183926 - RCHARR1 DNA MER1_type 0 974 681 2 775 957 264 111 55 chr1 25011773 25012249 -172183183 - RCHARR1 DNA MER1_type -307 667 165 2 775 284 311 48 116 chr1 25012325 25012514 -172182918 - RCHARR1 DNA MER1_type -796 178 3 2 775 5574 103 14 1 chr1 25012629 25013442 -172181990 - Lx LINE L1 -2 6652 5830 2 775 2867 142 40 2 chr1 25013443 25013944 -172181488 + L1_Mm LINE L1 5091 5610 -273 2 775 26 88 0 0 chr1 25014196 25014264 -172181168 + AT_rich Low_complexity Low_complexity 1 68 0 2 775 1663 325 78 29 chr1 25014318 25015238 -172180194 - Lx8 LINE L1 -68 7405 6441 2 775 543 69 0 0 chr1 25015570 25015642 -172179790 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 2 775 1196 276 51 18 chr1 25015656 25015988 -172179444 + MTE2b LTR MaLR 21 363 -16 2 775 671 304 92 27 chr1 25016004 25016298 -172179134 - MLT2D LTR ERVL -51 363 51 3 775 3540 55 0 0 chr1 25016970 25017456 -172177976 - L1_Mus4 LINE L1 -601 6035 5550 3 775 4117 99 0 17 chr1 25017457 25018043 -172177389 + L1_Mus4 LINE L1 6057 6632 -4 3 775 1144 107 0 53 chr1 25018469 25018657 -172176775 - ORR1A3 LTR MaLR 0 326 149 3 775 1313 174 15 25 chr1 25018651 25018936 -172176496 - ORR1C1 LTR MaLR -32 346 3 3 775 300 355 70 7 chr1 25019813 25019955 -172175477 - MIRb SINE MIR -11 257 107 3 775 187 352 22 74 chr1 25020423 25020558 -172174874 + MIR SINE MIR 40 167 -95 3 775 29638 140 24 78 chr1 25020883 25022076 -172173356 + L1Md_F2 LINE L1 304 1429 -4454 3 775 261 0 0 0 chr1 25022076 25022105 -172173327 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 775 29638 81 16 0 chr1 25022105 25026196 -172169236 + L1Md_F2 LINE L1 1430 5584 -299 3 775 7071 96 1 5 chr1 25026197 25027185 -172168247 + L1Md_F2 LINE L1 5587 6570 -12 3 775 26 30 0 0 chr1 25027238 25027271 -172168161 + AT_rich Low_complexity Low_complexity 1 33 0 3 775 4019 166 154 61 chr1 25028827 25029764 -172165668 - RLTR25B LTR ERVK 0 1028 5 3 775 402 266 16 99 chr1 25029942 25030063 -172165369 - B1F SINE Alu -6 143 33 4 775 22 88 0 0 chr1 25030137 25030194 -172165238 + AT_rich Low_complexity Low_complexity 1 57 0 4 775 662 200 96 0 chr1 25030462 25030597 -172164835 - B1_Mur4 SINE Alu -1 149 2 4 775 4476 162 19 37 chr1 25030781 25031302 -172164130 - Lx LINE L1 -1 6653 6157 4 775 1211 61 0 0 chr1 25031302 25031449 -172163983 - B1_Mus2 SINE Alu 0 147 1 4 775 4476 162 19 37 chr1 25031449 25031775 -172163657 - Lx LINE L1 -498 6156 5821 4 775 357 24 0 0 chr1 25031967 25032009 -172163423 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 4 775 472 81 35 0 chr1 25032144 25032231 -172163201 - L1Md_F2 LINE L1 0 6582 6493 4 96 23217 157 11 14 chr1 25032224 25037695 -172157737 - Lx LINE L1 -34 5849 392 4 776 17993 63 5 2 chr1 25038210 25040674 -172154758 + L1Md_F2 LINE L1 3115 5585 -298 4 776 7827 60 4 2 chr1 25040676 25041668 -172153764 + L1Md_F2 LINE L1 5588 6581 -1 4 776 22 35 0 0 chr1 25041668 25041697 -172153735 + AT_rich Low_complexity Low_complexity 1 29 0 4 776 2334 72 0 0 chr1 25041703 25042009 -172153423 + L1Md_F2 LINE L1 6277 6582 0 4 776 526 227 161 42 chr1 25042206 25042399 -172153033 - B3 SINE B2 0 216 1 5 776 729 297 102 23 chr1 25042415 25042680 -172152752 - ORR1E LTR MaLR -31 328 43 5 776 517 146 194 0 chr1 25042883 25042986 -172152446 + RSINE1 SINE B4 12 134 -31 5 776 264 30 0 0 chr1 25043075 25043108 -172152324 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 776 982 305 42 31 chr1 25043833 25044121 -172151311 + B4A SINE B4 2 292 0 5 776 279 241 25 12 chr1 25044205 25044285 -172151147 + GA-rich Low_complexity Low_complexity 2 82 0 5 776 1033 41 7 14 chr1 25044286 25044434 -172150998 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 5 776 379 326 40 22 chr1 25044494 25044720 -172150712 - L1MCb LINE L1 -5730 315 86 5 776 619 320 31 18 chr1 25045721 25045944 -172149488 - MLT1F LTR MaLR 0 548 323 5 776 273 173 0 0 chr1 25045950 25046002 -172149430 - MT2A LTR ERVL 0 584 533 5 776 189 139 0 0 chr1 25046002 25046045 -172149387 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 776 860 211 96 107 chr1 25046070 25046485 -172148947 - MT2A LTR ERVL -57 544 1 5 776 498 377 45 45 chr1 25046490 25046801 -172148631 - MLT1F LTR MaLR -228 320 10 5 776 203 116 47 0 chr1 25046994 25047037 -172148395 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 776 720 316 112 8 chr1 25047346 25047614 -172147818 - RMER15 LTR ERVL -1 574 279 6 776 293 239 74 32 chr1 25047617 25047712 -172147720 - RMER15 LTR ERVL -416 159 61 6 776 337 336 9 26 chr1 25047715 25047831 -172147601 - B3A SINE B2 -9 189 76 6 776 650 232 206 34 chr1 25047843 25048082 -172147350 - RMER4B LTR ERVK -23 588 343 6 776 408 352 186 0 chr1 25048190 25048389 -172147043 + MTE-int LTR MaLR 59 294 -1286 6 776 741 337 68 8 chr1 25048380 25048643 -172146789 + MTE-int LTR MaLR 1045 1323 -257 6 776 726 265 10 30 chr1 25049247 25049449 -172145983 + MTE-int LTR MaLR 1336 1533 -47 6 776 555 277 37 88 chr1 25049576 25049832 -172145600 + MTE2a LTR MaLR 96 366 -13 6 776 21 0 0 0 chr1 25050455 25050476 -172144956 + AT_rich Low_complexity Low_complexity 1 21 0 6 776 4777 56 3 0 chr1 25050485 25051112 -172144320 - L1Md_F2 LINE L1 -254 6328 5700 6 776 1549 45 72 24 chr1 25051112 25051319 -172144113 + L1Md_F2 LINE L1 6354 6570 -12 6 776 258 326 224 5 chr1 25052000 25052219 -172143213 - L2 LINE L2 -557 2862 2596 6 776 252 348 30 18 chr1 25052276 25052440 -172142992 - L2 LINE L2 -1329 2090 1925 6 776 992 314 144 23 chr1 25052577 25053008 -172142424 + MER21B LTR ERV1 6 488 -375 7 776 455 356 0 0 chr1 25053012 25053144 -172142288 + MER21B LTR ERV1 599 730 -133 7 776 384 22 0 0 chr1 25053169 25053214 -172142218 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 776 386 345 41 12 chr1 25053412 25053582 -172141850 - L2 LINE L2 -1682 1737 1563 6 776 793 281 125 53 chr1 25053899 25054212 -172141220 + MTE2a LTR MaLR 57 379 0 7 776 3237 105 4 2 chr1 25054416 25054882 -172140550 - L1_Mus4 LINE L1 -6 6630 6164 7 776 3878 132 9 0 chr1 25054882 25055528 -172139904 + L1_Mm LINE L1 4296 4947 -936 7 776 757 271 79 73 chr1 25056093 25056423 -172139009 - MLT1A0 LTR MaLR -8 357 26 7 776 477 245 137 13 chr1 25057733 25057886 -172137546 - RMER5 LTR ERV1 -5 529 358 7 776 728 220 31 49 chr1 25057914 25058006 -172137426 - RMER5 LTR ERV1 -135 399 305 7 776 1814 142 118 24 chr1 25058006 25058296 -172137136 + RLTR9E LTR ERVK 1 312 -97 7 776 480 18 0 0 chr1 25058296 25058353 -172137079 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 776 1814 142 118 24 chr1 25058353 25058436 -172136996 + RLTR9E LTR ERVK 313 409 0 7 776 728 220 31 49 chr1 25058436 25058568 -172136864 - RMER5 LTR ERV1 -230 304 179 7 776 188 35 35 0 chr1 25058931 25058960 -172136472 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 776 403 285 206 28 chr1 25058980 25059121 -172136311 - B3 SINE B2 -46 170 5 8 776 4648 199 77 66 chr1 25059258 25060579 -172134853 + Lx7 LINE L1 6361 7696 0 8 776 181 324 53 13 chr1 25060989 25061064 -172134368 + L2b LINE L2 3104 3181 -194 8 776 306 73 0 0 chr1 25061151 25061192 -172134240 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 8 776 416 244 0 0 chr1 25061786 25061864 -172133568 + PB1D10 SINE Alu 35 112 -5 8 776 541 281 24 12 chr1 25061980 25062146 -172133286 + Lx5 LINE L1 6878 7045 -5 8 776 193 102 0 58 chr1 25062232 25062284 -172133148 + T-rich Low_complexity Low_complexity 3 51 0 8 776 1014 129 0 0 chr1 25062286 25062433 -172132999 - B1_Mus1 SINE Alu 0 148 2 8 776 1160 128 17 0 chr1 25062659 25062831 -172132601 + B2_Mm2 SINE B2 6 180 -15 8 776 677 12 12 0 chr1 25062831 25062913 -172132519 + (GAAAA)n Simple_repeat Simple_repeat 4 86 0 8 776 314 0 49 0 chr1 25062950 25062991 -172132441 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 9 776 378 61 0 0 chr1 25063258 25063307 -172132125 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 9 776 1029 123 0 16 chr1 25063307 25063489 -172131943 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 9 776 2377 113 14 14 chr1 25063530 25063898 -172131534 - RLTR9A LTR ERVK 0 368 1 9 776 564 230 68 6 chr1 25064052 25064214 -172131218 - Lx8 LINE L1 -441 7032 6861 9 776 259 286 0 16 chr1 25064227 25064291 -172131141 - B4A SINE B4 -218 74 12 9 776 248 326 122 44 chr1 25064300 25064390 -172131042 - B4A SINE B4 -195 97 1 9 776 242 270 40 13 chr1 25064491 25064566 -172130866 - B4A SINE B4 -59 233 157 9 776 925 108 0 0 chr1 25064762 25064891 -172130541 + B1_Mm SINE Alu 19 147 0 9 776 219 69 0 0 chr1 25064893 25064922 -172130510 + (A)n Simple_repeat Simple_repeat 1 29 0 9 776 23 0 0 0 chr1 25065196 25065219 -172130213 + AT_rich Low_complexity Low_complexity 1 23 0 1 776 312 285 169 0 chr1 25065454 25065584 -172129848 + Tigger16b DNA Tigger 186 337 0 1 776 493 271 70 32 chr1 25066230 25066417 -172129015 - Tigger6a DNA MER2_type 0 1083 890 1 776 1274 82 43 11 chr1 25066535 25066721 -172128711 - B2_Mm2 SINE B2 -3 192 1 1 776 737 288 104 96 chr1 25067181 25067709 -172127723 - Lx8 LINE L1 -6 7467 6922 1 776 1253 34 0 0 chr1 25067709 25067856 -172127576 + B1_Mm SINE Alu 1 147 0 1 776 737 288 104 96 chr1 25067856 25067973 -172127459 - Lx8 LINE L1 -552 6921 6817 1 776 279 0 0 0 chr1 25068896 25068927 -172126505 + (A)n Simple_repeat Simple_repeat 1 31 0 1 776 189 94 0 0 chr1 25069278 25069310 -172126122 + (A)n Simple_repeat Simple_repeat 1 32 0 1 776 463 223 330 39 chr1 25069670 25069955 -172125477 + RLTR9A LTR ERVK 1 368 0 1 776 24 0 0 0 chr1 25071433 25071457 -172123975 + AT_rich Low_complexity Low_complexity 1 24 0 1 776 2602 80 5 51 chr1 25071668 25072212 -172123220 + RLTR6_Mm LTR ERV1 1 639 -15 1 776 5601 67 25 19 chr1 25072212 25073573 -172121859 + MMVL30-int LTR ERV1 21 1468 -2230 1 776 9330 30 31 6 chr1 25073856 25076064 -172119368 + MMVL30-int LTR ERV1 1437 3698 0 1 776 2469 95 10 67 chr1 25076064 25076628 -172118804 + RLTR6_Mm LTR ERV1 1 652 -2 1 776 519 17 0 0 chr1 25076796 25076856 -172118576 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 776 550 365 42 34 chr1 25076859 25077081 -172118351 - B4A SINE B4 -26 266 42 1 776 6483 54 2 21 chr1 25077081 25077919 -172117513 + RLTR13B2 LTR ERVK 1 822 0 1 776 550 365 42 34 chr1 25077919 25077960 -172117472 - B4A SINE B4 -251 41 1 1 776 371 162 414 69 chr1 25078619 25078757 -172116675 - ORR1D1 LTR MaLR 0 421 201 1 776 846 350 17 31 chr1 25078958 25079247 -172116185 - B4A SINE B4 -6 286 2 1 776 336 328 65 48 chr1 25079247 25079417 -172116015 + RMER5 LTR ERV1 119 291 -243 1 776 440 283 23 8 chr1 25079693 25079821 -172115611 - MLT1E1A LTR MaLR -538 142 13 1 776 760 276 74 87 chr1 25079979 25080372 -172115060 + MER92B LTR ERV1 100 487 -149 1 776 261 248 146 76 chr1 25080490 25080634 -172114798 + MER92B LTR ERV1 481 634 -2 1 776 21 36 0 0 chr1 25080891 25080919 -172114513 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 1961 210 54 3 chr1 25080981 25081368 -172114064 - MTC LTR MaLR -8 413 7 1 776 22 0 0 0 chr1 25081439 25081461 -172113971 + AT_rich Low_complexity Low_complexity 1 22 0 1 776 694 244 11 63 chr1 25081461 25081666 -172113766 - B3A SINE B2 -3 213 19 1 776 218 116 0 23 chr1 25081950 25081994 -172113438 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 776 866 315 76 14 chr1 25083816 25084173 -172111259 - MTE2b LTR MaLR 0 379 1 1 776 211 169 12 49 chr1 25085153 25085234 -172110198 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 776 1077 105 10 45 chr1 25086486 25086686 -172108746 - L1_Mus4 LINE L1 -1 6635 6443 1 776 378 0 0 0 chr1 25086702 25086744 -172108688 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 776 787 309 18 62 chr1 25086783 25087056 -172108376 - B4A SINE B4 -10 282 22 1 776 588 332 143 19 chr1 25088805 25089127 -172106305 + MLT1J LTR MaLR 6 367 -145 1 776 1034 302 41 44 chr1 25089260 25089624 -172105808 + MLT1A0 LTR MaLR 3 365 0 1 776 204 125 0 0 chr1 25089731 25089763 -172105669 + (A)n Simple_repeat Simple_repeat 1 32 0 1 776 2284 156 3 5 chr1 25089964 25090345 -172105087 + Lx2B LINE L1 6621 7000 0 1 776 232 327 65 7 chr1 25091602 25091756 -172103676 + L1MC LINE L1 5603 5765 -2117 1 776 225 155 0 0 chr1 25092333 25092391 -172103041 + A-rich Low_complexity Low_complexity 1 58 0 1 776 667 279 131 0 chr1 25092405 25092588 -172102844 + B3 SINE B2 3 209 -7 1 776 423 83 0 0 chr1 25092672 25092732 -172102700 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 776 3176 59 5 0 chr1 25092792 25093183 -172102249 - MTA_Mm LTR MaLR 0 396 4 1 776 315 0 0 0 chr1 25093183 25093218 -172102214 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 776 7606 73 6 17 chr1 25094143 25095301 -172100131 - L1_Mus3 LINE L1 0 6638 5528 1 776 220 340 73 26 chr1 25095301 25095452 -172099980 - L3 LINE CR1 -138 4351 4194 1 776 448 148 55 9 chr1 25095822 25095931 -172099501 + Lx9 LINE L1 7404 7517 -127 1 776 218 227 0 0 chr1 25095946 25095990 -172099442 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 776 246 284 62 19 chr1 25096250 25096383 -172099049 + MIR SINE MIR 25 166 -102 1 776 876 174 0 7 chr1 25096846 25096991 -172098441 + B1_Mus1 SINE Alu 5 148 0 1 776 748 77 143 17 chr1 25097041 25097151 -172098281 + B1_Mm SINE Alu 12 138 -9 1 776 855 81 12 24 chr1 25097151 25097316 -172098116 + (CAAAC)n Simple_repeat Simple_repeat 2 164 0 1 776 507 107 0 0 chr1 25097491 25097566 -172097866 + (TTA)n Simple_repeat Simple_repeat 2 76 0 1 776 216 0 0 0 chr1 25097606 25097630 -172097802 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 776 21 36 0 0 chr1 25100219 25100247 -172095185 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 241 346 35 61 chr1 25101671 25101785 -172093647 + L2b LINE L2 3265 3375 0 1 776 479 284 106 89 chr1 25102241 25102716 -172092716 - RLTR12B LTR ERVK -15 512 3 1 776 434 262 105 35 chr1 25102930 25103159 -172092273 + L1MA10 LINE L1 6018 6262 -72 1 776 13042 111 17 5 chr1 25103340 25105589 -172089843 + L1Md_A LINE L1 1115 3392 -2491 1 776 1211 176 51 32 chr1 25105593 25105846 -172089586 - RLTR9D LTR ERVK -12 391 134 1 776 1640 63 0 0 chr1 25105846 25106069 -172089363 + L1_Mm LINE L1 4436 4658 -1225 1 776 4407 66 3 17 chr1 25106069 25106318 -172089114 + L1_Mus1 LINE L1 5990 6238 -329 1 776 6917 33 2 8 chr1 25106318 25107145 -172088287 - RLTR13B2 LTR ERVK 0 822 1 1 776 4407 66 3 17 chr1 25107145 25107481 -172087951 + L1_Mus1 LINE L1 6239 6567 0 1 776 192 359 29 51 chr1 25107959 25108097 -172087335 - L2a LINE L2 -18 3408 3274 1 776 1286 277 49 33 chr1 25108606 25109095 -172086337 - Lx9 LINE L1 -155 7489 6993 1 776 243 61 0 0 chr1 25109102 25109135 -172086297 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 1 776 330 26 0 0 chr1 25109136 25109175 -172086257 + (TTCTC)n Simple_repeat Simple_repeat 1 39 0 1 776 764 93 41 0 chr1 25109176 25109348 -172086084 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 776 399 291 94 6 chr1 25109349 25109529 -172085903 - Lx9 LINE L1 -662 6982 6787 1 776 22 35 0 0 chr1 25109605 25109634 -172085798 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 217 49 49 0 chr1 25109729 25109750 -172085682 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 776 1175 75 0 0 chr1 25109750 25109897 -172085535 - B1_Mm SINE Alu 0 147 1 1 776 217 49 49 0 chr1 25109897 25109916 -172085516 + (TTTA)n Simple_repeat Simple_repeat 3 21 0 1 776 249 378 47 7 chr1 25110063 25110212 -172085220 + Charlie1a DNA MER1_type 255 409 -1046 1 776 281 313 8 57 chr1 25110275 25110397 -172085035 + PB1D10 SINE Alu 1 116 -1 1 776 210 200 0 0 chr1 25111082 25111110 -172084322 + A-rich Low_complexity Low_complexity 1 28 0 1 776 1436 73 11 0 chr1 25111110 25111301 -172084131 + B2_Mm1t SINE B2 1 193 0 1 776 210 200 0 0 chr1 25111301 25111322 -172084110 + A-rich Low_complexity Low_complexity 29 49 0 1 776 240 259 103 0 chr1 25115154 25115212 -172080220 + ID4 SINE ID 1 64 -19 1 776 261 83 0 0 chr1 25115233 25115269 -172080163 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 776 323 280 13 0 chr1 25115887 25115962 -172079470 + ID SINE ID 2 77 -147 1 776 1003 304 46 26 chr1 25116668 25117013 -172078419 - MLT2D LTR ERVL 0 414 63 1 776 209 319 108 24 chr1 25117402 25117595 -172077837 + L2c LINE L2 3192 3375 0 1 776 190 250 0 24 chr1 25117692 25117733 -172077699 + L2c LINE L2 3147 3186 -201 1 776 199 71 48 0 chr1 25117767 25117809 -172077623 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 776 831 266 50 76 chr1 25118120 25118464 -172076968 + MER67D LTR ERV1 6 368 -343 1 776 180 111 0 0 chr1 25118667 25118694 -172076738 + (T)n Simple_repeat Simple_repeat 1 27 0 1 776 2411 14 10 0 chr1 25118694 25118986 -172076446 - ORR1A0 LTR MaLR -51 295 1 1 776 412 175 66 8 chr1 25118986 25119107 -172076325 - L1_Mur3 LINE L1 -2442 3438 3311 1 776 218 217 22 0 chr1 25119183 25119229 -172076203 + B2_Mm1t SINE B2 1 47 -146 1 776 781 294 168 46 chr1 25119806 25120164 -172075268 + MER92B LTR ERV1 22 414 -222 1 776 582 28 0 0 chr1 25120164 25120236 -172075196 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 776 781 294 168 46 chr1 25120236 25120425 -172075007 + MER92B LTR ERV1 415 636 0 1 776 180 0 0 0 chr1 25120728 25120748 -172074684 + (T)n Simple_repeat Simple_repeat 1 20 0 1 776 980 193 31 152 chr1 25120986 25121340 -172074092 + RLTRETN_Mm LTR ERVK 12 322 0 1 776 571 243 96 51 chr1 25121690 25121846 -172073586 - B3A SINE B2 -35 163 1 1 776 250 295 10 40 chr1 25122112 25122211 -172073221 - L2c LINE L2 -9 3378 3283 1 776 216 0 0 0 chr1 25122636 25122660 -172072772 + (A)n Simple_repeat Simple_repeat 1 24 0 1 776 963 45 0 36 chr1 25123594 25123731 -172071701 + L1_Mus1 LINE L1 6436 6567 0 1 776 237 139 0 0 chr1 25125625 25125668 -172069764 + (A)n Simple_repeat Simple_repeat 1 43 0 1 776 432 0 0 0 chr1 25128646 25128694 -172066738 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 776 698 170 32 14 chr1 25130097 25130377 -172065055 + (TCTA)n Simple_repeat Simple_repeat 1 285 0 1 776 622 144 23 11 chr1 25130407 25130583 -172064849 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 776 423 0 0 0 chr1 25134096 25134143 -172061289 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 776 336 225 56 73 chr1 25136183 25136317 -172059115 - B3A SINE B2 -5 211 67 1 776 225 0 0 0 chr1 25137528 25137553 -172057879 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 776 243 0 0 0 chr1 25137553 25137579 -172057853 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 776 306 0 0 0 chr1 25137805 25137839 -172057593 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 776 21 36 0 0 chr1 25138708 25138736 -172056696 + AT_rich Low_complexity Low_complexity 1 28 0 2 776 25 0 0 0 chr1 25139095 25139120 -172056312 + AT_rich Low_complexity Low_complexity 1 25 0 2 776 356 266 0 0 chr1 25139475 25139554 -172055878 - B1_Mur1 SINE Alu -21 128 50 2 776 235 326 81 0 chr1 25139481 25139567 -172055865 - ID_B1 SINE B4 -24 200 108 2 776 218 81 27 0 chr1 25139747 25139784 -172055648 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 776 288 294 26 60 chr1 25141511 25141627 -172053805 - PB1D7 SINE Alu -5 115 4 2 776 395 321 36 22 chr1 25143523 25143660 -172051772 - MIRm SINE MIR -127 149 11 2 776 506 296 81 95 chr1 25144274 25144569 -172050863 - B4 SINE B4 0 292 2 2 776 252 0 0 0 chr1 25144690 25144718 -172050714 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 776 361 311 88 26 chr1 25144773 25145001 -172050431 + L2 LINE L2 1858 2099 -1320 2 776 313 329 60 0 chr1 25146787 25146936 -172048496 - LTR33A_ LTR ERVL -85 446 289 2 776 239 252 112 80 chr1 25146967 25147092 -172048340 - LTR33A_ LTR ERVL -327 204 76 2 776 1318 249 64 13 chr1 25147311 25147686 -172047746 - Lx8 LINE L1 -29 7444 7051 2 776 213 39 0 0 chr1 25148272 25148298 -172047134 + (T)n Simple_repeat Simple_repeat 1 26 0 2 776 726 234 0 0 chr1 25151676 25151817 -172043615 + B1_Mur2 SINE Alu 1 141 -8 2 776 2842 67 64 0 chr1 25151892 25152268 -172043164 + MTB LTR MaLR 1 400 0 2 776 210 175 75 0 chr1 25152664 25152704 -172042728 + B1F1 SINE Alu 6 48 -101 2 776 658 301 11 0 chr1 25153702 25153885 -172041547 - MER5A DNA MER1_type -4 185 1 2 776 26 0 0 0 chr1 25154952 25154978 -172040454 + AT_rich Low_complexity Low_complexity 1 26 0 2 776 191 125 25 0 chr1 25154985 25155025 -172040407 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2 776 642 26 0 0 chr1 25155070 25155146 -172040286 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 776 228 111 0 0 chr1 25155347 25155383 -172040049 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 776 781 292 52 0 chr1 25156134 25156326 -172039106 + ID_B1 SINE B4 23 224 0 2 776 22 0 0 0 chr1 25156808 25156830 -172038602 + AT_rich Low_complexity Low_complexity 1 22 0 2 776 438 322 7 33 chr1 25156862 25157013 -172038419 - RSINE1 SINE B4 -16 149 3 2 776 230 302 8 33 chr1 25157212 25157332 -172038100 - PB1D10 SINE Alu 0 117 1 2 776 264 77 0 0 chr1 25157681 25157720 -172037712 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 776 506 289 10 82 chr1 25157951 25158147 -172037285 - B3A SINE B2 -16 182 1 2 776 339 182 45 10 chr1 25158515 25158595 -172036837 - B1_Mur1 SINE Alu -1 148 41 2 776 721 271 70 18 chr1 25159963 25160192 -172035240 + RMER5 LTR ERV1 294 534 0 2 776 522 0 0 0 chr1 25160361 25160419 -172035013 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 776 1299 196 39 14 chr1 25161556 25161835 -172033597 + RMER1C Other Other 900 1185 -157 2 776 624 167 0 0 chr1 25161874 25162042 -172033390 + (TG)n Simple_repeat Simple_repeat 1 168 0 2 776 545 187 76 39 chr1 25162042 25162212 -172033220 + RMER1C Other Other 1215 1341 -1 2 776 180 111 0 0 chr1 25162661 25162688 -172032744 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 776 186 43 0 0 chr1 25165033 25165056 -172030376 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 776 530 345 71 26 chr1 25165220 25165488 -172029944 + B4 SINE B4 11 290 -2 2 776 195 42 0 0 chr1 25165766 25165790 -172029642 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 777 474 171 0 13 chr1 25166876 25166953 -172028479 + ID4_ SINE ID 2 77 -6 2 777 244 259 0 33 chr1 25166956 25167016 -172028416 + ID_B1 SINE B4 165 222 -2 2 777 185 245 0 54 chr1 25170489 25170545 -172024887 + MER5B DNA MER1_type 107 159 -19 2 777 234 0 0 0 chr1 25171190 25171216 -172024216 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 2 777 210 162 0 0 chr1 25171903 25171940 -172023492 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 777 709 27 327 0 chr1 25174574 25174684 -172020748 + B1_Mus2 SINE Alu 2 147 0 2 777 365 143 0 28 chr1 25175493 25175565 -172019867 + T-rich Low_complexity Low_complexity 5 74 0 2 777 378 42 0 0 chr1 25175565 25175613 -172019819 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2 777 377 37 37 0 chr1 25175708 25175762 -172019670 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 2 777 240 343 20 0 chr1 25176202 25176304 -172019128 + MER20 DNA MER1_type 109 212 -7 2 777 383 0 21 0 chr1 25176308 25176355 -172019077 + (TATG)n Simple_repeat Simple_repeat 3 50 0 2 777 33825 34 1 7 chr1 25176621 25182297 -172013135 + L1Md_Gf LINE L1 1 5589 -297 2 777 8970 8 0 0 chr1 25182297 25183293 -172012139 + L1Md_T LINE L1 5587 6582 0 2 777 195 69 0 0 chr1 25183304 25183333 -172012099 + (A)n Simple_repeat Simple_repeat 1 29 0 2 777 505 172 95 22 chr1 25185920 25186057 -172009375 - Lx4B LINE L1 -5 7053 6907 2 777 415 278 10 0 chr1 25188358 25188455 -172006977 - PB1D10 SINE Alu -11 106 9 2 777 271 321 0 0 chr1 25188390 25188471 -172006961 - ID_B1 SINE B4 -70 154 74 2 777 26 0 0 0 chr1 25188684 25188710 -172006722 + AT_rich Low_complexity Low_complexity 1 26 0 2 777 227 357 99 39 chr1 25190533 25190918 -172004514 + HAL1 LINE L1 1210 1617 -890 2 777 23 68 0 0 chr1 25191068 25191112 -172004320 + AT_rich Low_complexity Low_complexity 1 44 0 2 777 474 223 187 16 chr1 25192243 25192366 -172003066 + B1_Mus2 SINE Alu 1 144 -3 2 777 435 119 0 0 chr1 25193215 25193282 -172002150 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 777 258 105 0 0 chr1 25193282 25193319 -172002113 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2 777 275 266 23 27 chr1 25193704 25193806 -172001626 + PB1D10 SINE Alu 17 120 0 2 777 522 230 245 69 chr1 25194602 25194946 -172000486 + Lx9 LINE L1 7238 7642 -2 2 777 30005 80 10 6 chr1 25194950 25200038 -171995394 + L1Md_F2 LINE L1 478 5585 -298 2 777 7563 61 12 20 chr1 25200039 25201040 -171994392 + L1Md_F2 LINE L1 5587 6579 -3 2 777 2557 240 25 15 chr1 25201074 25201722 -171993710 + Lx7 LINE L1 6732 7385 -311 2 777 387 0 0 0 chr1 25201727 25201770 -171993662 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 777 243 0 0 0 chr1 25201770 25201796 -171993636 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 777 27 29 0 0 chr1 25201903 25201937 -171993495 + AT_rich Low_complexity Low_complexity 1 34 0 2 777 543 269 53 7 chr1 25201948 25202098 -171993334 + RSINE1 SINE B4 3 159 -6 2 777 1082 65 7 0 chr1 25202430 25202568 -171992864 - B1_Mm SINE Alu -8 139 1 2 777 315 299 20 99 chr1 25202568 25202720 -171992712 - MER5B DNA MER1_type -35 143 4 2 777 183 292 29 86 chr1 25202736 25202841 -171992591 + MIRb SINE MIR 68 166 -102 2 777 190 354 0 0 chr1 25203416 25203481 -171991951 + L2 LINE L2 2430 2494 -925 2 777 314 273 157 7 chr1 25204159 25204299 -171991133 + HAL1-3A_ME LINE L1 2631 2791 -67 2 777 811 107 30 0 chr1 25204313 25204482 -171990950 + (GA)n Simple_repeat Simple_repeat 1 174 0 2 777 789 224 0 0 chr1 25204649 25204796 -171990636 - B1_Mur2 SINE Alu 0 149 3 2 777 735 53 0 0 chr1 25205259 25205354 -171990078 - L1_Mus3 LINE L1 -646 5920 5826 2 777 4847 86 22 3 chr1 25205354 25206041 -171989391 + L1_Mus3 LINE L1 5933 6632 -6 2 777 201 26 25 50 chr1 25206075 25206115 -171989317 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 777 1162 75 7 0 chr1 25206119 25206265 -171989167 - B1_Mus1 SINE Alu 0 148 2 2 777 1512 74 5 0 chr1 25206271 25206474 -171988958 + L1_Mus1 LINE L1 6356 6559 -8 2 777 333 0 0 0 chr1 25206474 25206511 -171988921 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 777 412 320 203 35 chr1 25208168 25208424 -171987008 + MLT1J LTR MaLR 5 303 -209 2 777 220 313 123 46 chr1 25208801 25208974 -171986458 - MIRc SINE MIR -64 204 27 2 777 265 238 82 38 chr1 25209113 25209280 -171986152 + Lx7 LINE L1 5792 5974 -1670 2 777 242 333 0 0 chr1 25209626 25209707 -171985725 + Lx7 LINE L1 7114 7194 -450 2 777 285 299 15 23 chr1 25209722 25209852 -171985580 + Lx9 LINE L1 7149 7277 -367 2 777 234 0 0 0 chr1 25209933 25209959 -171985473 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 777 342 0 0 0 chr1 25209959 25209996 -171985436 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 777 22 0 0 0 chr1 25210129 25210151 -171985281 + AT_rich Low_complexity Low_complexity 1 22 0 2 777 514 268 14 0 chr1 25210159 25210301 -171985131 - Lx9 LINE L1 -298 7346 7203 2 777 645 0 35 0 chr1 25210338 25210423 -171985009 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 777 370 179 107 0 chr1 25210425 25210537 -171984895 + Lx9 LINE L1 7520 7643 -1 2 777 3843 52 2 0 chr1 25210556 25211074 -171984358 - Lx3_Mus LINE L1 -1093 5916 5398 2 777 3833 43 2 0 chr1 25211074 25211540 -171983892 + L1Md_F2 LINE L1 6116 6582 0 2 777 1203 276 137 84 chr1 25211571 25212117 -171983315 + RMER15 LTR ERVL 1 575 0 2 777 211 380 8 24 chr1 25213551 25213675 -171981757 + (TG)n Simple_repeat Simple_repeat 1 122 0 2 777 310 354 61 25 chr1 25213677 25213955 -171981477 - B4A SINE B4 -4 288 1 2 777 1755 243 137 30 chr1 25214969 25215230 -171980202 + RLTR40 LTR ERVK 19 291 -526 2 777 468 111 0 0 chr1 25215230 25215302 -171980130 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 777 1755 243 137 30 chr1 25215302 25215719 -171979713 + RLTR40 LTR ERVK 292 769 -48 2 777 1231 236 156 6 chr1 25215788 25216116 -171979316 + MTEb LTR MaLR 3 379 0 2 777 386 308 53 20 chr1 25216116 25216361 -171979071 - L1M5 LINE L1 -552 5627 5375 2 777 305 333 32 16 chr1 25216803 25216928 -171978504 - MIRb SINE MIR -16 252 126 2 777 935 304 108 30 chr1 25218341 25218803 -171976629 + MER67D LTR ERV1 6 503 -11 3 777 294 275 71 185 chr1 25219296 25219621 -171975811 + ORR1E LTR MaLR 67 354 -5 3 777 835 131 28 17 chr1 25219730 25219908 -171975524 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 777 4629 98 95 0 chr1 25220951 25221645 -171973787 + L1_Mus3 LINE L1 5871 6630 -8 3 777 462 65 0 0 chr1 25221887 25221949 -171973483 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 3 777 264 59 0 0 chr1 25222669 25222703 -171972729 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 3 777 325 301 136 7 chr1 25223880 25224027 -171971405 - LTR33A LTR ERVL -3 517 352 3 777 1458 239 37 19 chr1 25224991 25225452 -171969980 + L1MA8 LINE L1 5274 5742 -549 3 777 257 303 22 22 chr1 25225469 25225560 -171969872 + MLT1A1 LTR MaLR 22 112 -296 3 777 681 240 192 22 chr1 25225779 25226179 -171969253 + L1MA8 LINE L1 5734 6201 -90 3 777 243 0 0 0 chr1 25226197 25226224 -171969208 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 777 266 294 65 59 chr1 25226809 25226979 -171968453 - MER34A LTR ERV1 -392 179 9 3 777 1307 196 47 54 chr1 25229197 25229494 -171965938 - ORR1B2 LTR MaLR -70 297 3 3 777 471 283 152 18 chr1 25229803 25230026 -171965406 - B4 SINE B4 -12 280 28 3 777 548 284 18 49 chr1 25230146 25230309 -171965123 - RSINE1 SINE B4 -1 164 7 3 777 327 314 0 38 chr1 25230405 25230511 -171964921 + ID_B1 SINE B4 114 215 -9 3 777 204 97 0 0 chr1 25230719 25230750 -171964682 + (GGA)n Simple_repeat Simple_repeat 3 33 0 3 777 974 104 45 0 chr1 25231332 25231466 -171963966 + B1_Mus1 SINE Alu 1 140 -8 3 777 180 0 0 0 chr1 25231466 25231486 -171963946 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 777 456 275 49 16 chr1 25231509 25231631 -171963801 - ID_B1 SINE B4 -33 191 66 3 777 534 16 0 0 chr1 25232962 25233025 -171962407 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 3 777 242 115 19 0 chr1 25233059 25233111 -171962321 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 777 207 0 0 0 chr1 25234482 25234505 -171960927 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 3 777 304 59 39 0 chr1 25235064 25235115 -171960317 + (CAA)n Simple_repeat Simple_repeat 3 55 0 3 777 185 264 18 35 chr1 25235183 25235254 -171960178 - MIR SINE MIR -116 160 81 3 777 242 255 0 0 chr1 25237952 25238003 -171957429 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 777 34 0 0 0 chr1 25238005 25238039 -171957393 + AT_rich Low_complexity Low_complexity 1 34 0 3 777 761 215 0 20 chr1 25238258 25238405 -171957027 - B1_Mur3 SINE Alu -3 146 3 3 777 363 307 49 56 chr1 25238408 25238570 -171956862 - MIR SINE MIR -46 216 56 3 777 4445 101 17 35 chr1 25239624 25240404 -171955028 + RMER17A LTR ERVK 1 751 0 3 777 316 311 68 48 chr1 25241764 25241959 -171953473 - MIR SINE MIR -4 258 67 3 777 709 265 58 85 chr1 25242018 25242323 -171953109 + B4 SINE B4 1 292 0 3 777 450 225 9 11 chr1 25242333 25242789 -171952643 + (CA)n Simple_repeat Simple_repeat 1 454 0 3 777 282 221 61 12 chr1 25243421 25243586 -171951846 + (TA)n Simple_repeat Simple_repeat 1 173 0 3 777 37 62 0 0 chr1 25243586 25243651 -171951781 + AT_rich Low_complexity Low_complexity 1 65 0 3 777 23 54 0 0 chr1 25244461 25244498 -171950934 + AT_rich Low_complexity Low_complexity 1 37 0 3 777 26 30 0 0 chr1 25244631 25244664 -171950768 + AT_rich Low_complexity Low_complexity 1 33 0 3 777 204 167 0 0 chr1 25245216 25245264 -171950168 + T-rich Low_complexity Low_complexity 2 49 0 3 777 497 16 16 0 chr1 25245470 25245532 -171949900 + (GAGAA)n Simple_repeat Simple_repeat 5 67 0 3 777 428 228 12 12 chr1 25245548 25245721 -171949711 + GA-rich Low_complexity Low_complexity 1 173 0 3 777 288 0 0 0 chr1 25247682 25247714 -171947718 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 777 231 61 0 0 chr1 25247808 25247841 -171947591 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 777 1161 42 7 7 chr1 25247846 25247991 -171947441 - B1_Mm SINE Alu -1 146 2 3 777 306 91 0 0 chr1 25248065 25248109 -171947323 + B3 SINE B2 1 44 -172 3 777 216 0 0 0 chr1 25248335 25248359 -171947073 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 777 429 20 0 0 chr1 25248359 25248408 -171947024 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 777 234 316 9 12 chr1 25249962 25250045 -171945387 + MIRb SINE MIR 50 128 -140 3 777 28 0 0 0 chr1 25251391 25251419 -171944013 + AT_rich Low_complexity Low_complexity 1 28 0 3 777 371 309 45 18 chr1 25251595 25251707 -171943725 + RSINE1 SINE B4 16 130 -35 3 777 228 216 0 0 chr1 25251756 25251807 -171943625 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 777 438 53 0 0 chr1 25251921 25251978 -171943454 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 777 393 333 14 62 chr1 25251981 25252125 -171943307 - RSINE1 SINE B4 -25 140 4 3 777 219 225 0 0 chr1 25252239 25252310 -171943122 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 777 306 0 0 0 chr1 25252562 25252596 -171942836 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 777 745 178 13 58 chr1 25253208 25253363 -171942069 + B1_Mus1 SINE Alu 1 148 0 3 777 929 235 42 30 chr1 25254087 25254397 -171941035 - Lx7 LINE L1 -1687 5957 5635 3 777 183 42 0 0 chr1 25254414 25254438 -171940994 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 777 310 235 7 40 chr1 25254439 25254736 -171940696 + (TCTCTG)n Simple_repeat Simple_repeat 1 286 0 3 777 200 182 0 0 chr1 25254740 25254773 -171940659 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 3 777 267 305 0 0 chr1 25254773 25254855 -171940577 - L1M2 LINE L1 -678 5619 5538 3 777 775 310 24 15 chr1 25255006 25255212 -171940220 + B3 SINE B2 7 214 -2 3 777 1422 298 113 9 chr1 25255245 25255820 -171939612 + Lx8 LINE L1 6212 6846 -627 3 777 394 139 11 11 chr1 25255893 25255917 -171939515 + polypyrimidine Low_complexity Low_complexity 64 87 0 3 777 1156 82 0 12 chr1 25255917 25256089 -171939343 + (TTC)n Simple_repeat Simple_repeat 3 172 0 3 777 394 139 11 11 chr1 25256089 25256151 -171939281 + polypyrimidine Low_complexity Low_complexity 1 63 0 3 777 859 167 21 0 chr1 25256152 25256296 -171939136 - B1_Mus1 SINE Alu -1 147 1 3 777 378 0 0 0 chr1 25256504 25256546 -171938886 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 777 252 0 0 0 chr1 25256546 25256573 -171938859 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 777 22 0 0 0 chr1 25256618 25256640 -171938792 + AT_rich Low_complexity Low_complexity 1 22 0 3 777 405 58 0 0 chr1 25256640 25256692 -171938740 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 777 21 0 0 0 chr1 25258527 25258548 -171936884 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 182 62 31 0 chr1 25259464 25259496 -171935936 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3 777 201 74 0 0 chr1 25260260 25260287 -171935145 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 777 668 72 0 67 chr1 25260497 25260616 -171934816 - L1Md_F2 LINE L1 -12 6570 6460 3 777 1192 35 0 0 chr1 25260616 25260761 -171934671 + L1Md_F2 LINE L1 5986 6130 -452 3 777 750 78 0 0 chr1 25262617 25262719 -171932713 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 3 777 415 340 88 79 chr1 25263449 25263746 -171931686 + L1ME2 LINE L1 4552 4847 -1299 3 777 318 80 0 0 chr1 25263746 25263796 -171931636 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 777 415 340 88 79 chr1 25263796 25264007 -171931425 + L1ME2 LINE L1 4848 5060 -1086 3 777 3935 54 8 4 chr1 25264007 25264507 -171930925 - L1Md_F2 LINE L1 0 6582 6081 3 777 415 340 88 79 chr1 25264507 25264607 -171930825 + L1ME2 LINE L1 5061 5165 -981 3 777 229 279 15 0 chr1 25264614 25264682 -171930750 + CT-rich Low_complexity Low_complexity 3 71 0 3 777 414 0 0 0 chr1 25264748 25264794 -171930638 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 777 581 332 22 70 chr1 25264845 25265117 -171930315 + B4A SINE B4 16 274 -18 3 777 311 313 12 0 chr1 25265894 25265977 -171929455 + L1ME2 LINE L1 5997 6080 -84 3 777 363 258 84 18 chr1 25266046 25266212 -171929220 + L1MA9 LINE L1 6020 6196 -116 3 777 3535 103 54 4 chr1 25266461 25266996 -171928436 - LTRIS2 LTR ERV1 0 564 3 3 777 208 329 41 65 chr1 25267246 25267415 -171928017 - L2 LINE L2 -467 2952 2788 3 777 266 358 63 21 chr1 25267518 25267709 -171927723 + MLT1F1 LTR MaLR 357 555 -14 3 777 909 140 169 16 chr1 25270083 25270272 -171925160 - URR1A DNA MER1_type -8 218 1 3 777 1193 175 4 35 chr1 25270851 25271082 -171924350 - URR1A DNA MER1_type -2 224 1 3 777 289 300 11 22 chr1 25272113 25272205 -171923227 - MTEb LTR MaLR -11 368 278 3 777 226 315 67 95 chr1 25272234 25272413 -171923019 - MTEb LTR MaLR -111 248 75 3 777 290 250 28 0 chr1 25272505 25272577 -171922855 - MLT2B3 LTR ERVL -480 74 1 3 777 657 0 0 0 chr1 25273685 25273758 -171921674 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 777 616 244 37 7 chr1 25274881 25275017 -171920415 - B1_Mur2 SINE Alu 0 149 10 3 777 459 359 65 18 chr1 25275071 25275349 -171920083 + LTR82A LTR ERVL 419 709 -163 3 777 622 252 89 16 chr1 25277029 25277313 -171918119 + MER33 DNA MER1_type 11 312 -12 3 777 192 40 0 0 chr1 25277540 25277565 -171917867 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 777 200 34 0 33 chr1 25277979 25278009 -171917423 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 777 519 186 0 0 chr1 25278807 25278909 -171916523 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 777 216 0 0 0 chr1 25280336 25280360 -171915072 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 777 25 0 0 0 chr1 25281268 25281293 -171914139 + AT_rich Low_complexity Low_complexity 1 25 0 3 777 1243 81 21 36 chr1 25281527 25281720 -171913712 + B2_Mm1t SINE B2 1 190 -3 3 777 22 0 0 0 chr1 25286344 25286366 -171909066 + GC_rich Low_complexity Low_complexity 1 22 0 3 777 792 260 39 0 chr1 25287998 25288202 -171907230 - ID_B1 SINE B4 -12 212 1 4 777 192 77 0 0 chr1 25289072 25289098 -171906334 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 777 261 315 114 12 chr1 25289270 25289437 -171905995 - B3 SINE B2 -32 184 1 4 777 21 36 0 0 chr1 25289444 25289472 -171905960 + AT_rich Low_complexity Low_complexity 1 28 0 4 777 246 394 0 0 chr1 25289484 25289555 -171905877 - PB1D7 SINE Alu -49 71 1 4 777 468 0 0 0 chr1 25289638 25289690 -171905742 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 777 27 29 0 0 chr1 25290473 25290507 -171904925 + AT_rich Low_complexity Low_complexity 1 34 0 4 777 403 331 80 70 chr1 25290611 25290923 -171904509 + L2 LINE L2 2689 3003 -416 4 777 292 332 114 51 chr1 25291116 25291370 -171904062 + MLT1H LTR MaLR 78 347 -202 4 777 468 301 11 63 chr1 25291645 25291819 -171903613 + Tigger1 DNA MER2_type 2253 2417 -1 4 777 184 375 0 0 chr1 25292335 25292391 -171903041 - L2b LINE L2 -16 3359 3304 4 777 1792 238 43 8 chr1 25292409 25292803 -171902629 - Lx6 LINE L1 -1 7459 7052 4 777 634 206 103 0 chr1 25292803 25292929 -171902503 + B1_Mus1 SINE Alu 8 146 -2 4 777 237 294 73 0 chr1 25293273 25293388 -171902044 - MIRb SINE MIR -104 158 41 4 777 1171 227 111 6 chr1 25293789 25294122 -171901310 - ORR1D2 LTR MaLR 0 370 3 4 777 21 0 0 0 chr1 25294425 25294446 -171900986 + AT_rich Low_complexity Low_complexity 1 21 0 4 777 22 0 0 0 chr1 25294618 25294640 -171900792 + AT_rich Low_complexity Low_complexity 1 22 0 4 778 481 296 49 14 chr1 25297097 25297241 -171898191 + B1F SINE Alu 1 149 0 4 778 184 59 29 29 chr1 25297289 25297324 -171898108 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 778 595 288 68 0 chr1 25297440 25297512 -171897920 + ID SINE ID 3 85 -139 4 778 269 365 38 9 chr1 25297512 25297617 -171897815 + PB1D10 SINE Alu 1 108 -9 4 778 195 139 0 0 chr1 25297694 25297730 -171897702 + (A)n Simple_repeat Simple_repeat 1 36 0 4 778 1674 194 116 44 chr1 25298176 25298565 -171896867 - MTC LTR MaLR 0 421 5 4 778 201 145 0 84 chr1 25299007 25299090 -171896342 + A-rich Low_complexity Low_complexity 2 77 0 4 778 234 217 17 0 chr1 25300069 25300129 -171895303 + (CAA)n Simple_repeat Simple_repeat 2 62 0 4 778 335 331 62 39 chr1 25301097 25301276 -171894156 + ORR1E LTR MaLR 8 190 -169 4 778 941 209 34 53 chr1 25301682 25301945 -171893487 + MYSERV-int LTR ERVK 6293 6550 0 4 778 2321 161 81 9 chr1 25301945 25302377 -171893055 + RLTR12A LTR ERVK 1 463 -105 4 778 736 238 54 22 chr1 25303746 25303931 -171891501 + B3A SINE B2 1 191 -25 4 778 250 242 65 32 chr1 25305027 25305151 -171890281 - L1MC4a LINE L1 -1 7881 7754 4 778 240 35 0 0 chr1 25305699 25305728 -171889704 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 778 551 313 28 9 chr1 25306182 25306398 -171889034 + Lx9 LINE L1 493 712 -6896 4 778 1972 246 60 97 chr1 25306370 25307100 -171888332 + Lx9 LINE L1 452 1154 -6454 4 778 222 218 0 0 chr1 25307172 25307227 -171888205 + T-rich Low_complexity Low_complexity 4 58 0 4 778 5192 213 40 28 chr1 25307549 25307859 -171887573 + Lx9 LINE L1 1132 1446 -4401 4 778 282 29 0 0 chr1 25307859 25307894 -171887538 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 778 5192 202 40 35 chr1 25307894 25308015 -171887417 + Lx9 LINE L1 1447 1570 -4277 4 778 216 0 0 0 chr1 25308015 25308039 -171887393 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 778 5192 202 40 35 chr1 25308039 25308218 -171887214 + Lx9 LINE L1 1571 1731 -4116 4 778 180 0 0 0 chr1 25308218 25308238 -171887194 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 778 5192 202 40 35 chr1 25308238 25308959 -171886473 + Lx9 LINE L1 1732 2478 -3369 4 778 244 186 78 7 chr1 25308989 25309130 -171886302 + (TA)n Simple_repeat Simple_repeat 1 151 0 4 778 250 137 26 40 chr1 25309063 25309139 -171886293 + (TATAA)n Simple_repeat Simple_repeat 4 78 0 4 778 21 36 0 0 chr1 25309190 25309218 -171886214 + AT_rich Low_complexity Low_complexity 1 28 0 4 778 1078 188 161 27 chr1 25309297 25309664 -171885768 + Lx9 LINE L1 2529 2944 -2903 4 778 807 108 0 0 chr1 25309681 25309801 -171885631 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 4 778 272 206 0 40 chr1 25309801 25309877 -171885555 + Lx9 LINE L1 3253 3325 -2522 4 778 1907 174 52 11 chr1 25309877 25310244 -171885188 - RMER6A LTR ERVK 0 756 375 4 778 6609 92 83 8 chr1 25310244 25310947 -171884485 - L1_Mus3 LINE L1 -13 6625 5850 4 778 3329 38 5 0 chr1 25310947 25311341 -171884091 - MTA_Mm LTR MaLR 0 396 1 4 778 6609 100 64 11 chr1 25311341 25311681 -171883751 - L1_Mus3 LINE L1 -34 5849 5510 4 778 5148 115 12 5 chr1 25311679 25312455 -171882977 + L1_Mus3 LINE L1 4717 5497 -386 4 778 1466 171 92 173 chr1 25312455 25312900 -171882532 - RMER6A LTR ERVK -347 409 1 4 778 7291 218 90 56 chr1 25312900 25313144 -171882288 + Lx9 LINE L1 3320 3588 -2259 4 778 312 48 0 0 chr1 25313144 25313186 -171882246 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 4 778 7291 218 90 56 chr1 25313186 25314858 -171880574 + Lx9 LINE L1 3589 5322 -525 4 778 522 0 0 0 chr1 25314858 25314916 -171880516 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 778 213 39 0 0 chr1 25314916 25314941 -171880491 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 778 7291 227 62 34 chr1 25314941 25316962 -171878470 + Lx9 LINE L1 5323 7516 -128 4 778 778 135 7 7 chr1 25316965 25317098 -171878334 + (TA)n Simple_repeat Simple_repeat 1 134 0 4 778 267 31 0 0 chr1 25317098 25317130 -171878302 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 778 778 135 7 7 chr1 25317130 25317138 -171878294 + (TA)n Simple_repeat Simple_repeat 1 8 0 4 778 365 227 13 13 chr1 25317157 25317233 -171878199 + B1_Mur1 SINE Alu 73 148 -1 4 778 810 329 31 0 chr1 25317528 25317753 -171877679 + B4A SINE B4 43 274 -18 4 778 464 285 121 22 chr1 25318326 25318599 -171876833 - Lx8 LINE L1 -26 7447 7148 4 778 465 363 136 26 chr1 25320175 25320565 -171874867 - MLT1J LTR MaLR -79 433 1 4 778 1043 104 0 0 chr1 25320821 25320965 -171874467 - B1_Mus1 SINE Alu 0 148 5 4 778 37 86 0 0 chr1 25320981 25321074 -171874358 + AT_rich Low_complexity Low_complexity 1 93 0 4 778 264 226 0 0 chr1 25322582 25322644 -171872788 + GA-rich Low_complexity Low_complexity 3 64 0 4 778 743 193 177 0 chr1 25322689 25322881 -171872551 + URR1A DNA MER1_type 1 226 0 4 778 21 71 0 0 chr1 25323073 25323115 -171872317 + AT_rich Low_complexity Low_complexity 1 42 0 4 778 423 0 0 0 chr1 25323562 25323609 -171871823 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 778 495 48 0 0 chr1 25323609 25323671 -171871761 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 778 2594 59 134 0 chr1 25325279 25325636 -171869796 - L1_Mus1 LINE L1 0 6567 6163 4 778 186 388 37 57 chr1 25326075 25326321 -171869111 + L2 LINE L2 2229 2469 -950 4 778 230 352 97 0 chr1 25327017 25327162 -171868270 - MIRb SINE MIR -27 241 79 4 778 180 77 0 0 chr1 25327591 25327617 -171867815 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 778 268 273 325 0 chr1 25329035 25329189 -171866243 - MIRb SINE MIR -47 221 18 4 778 229 194 0 61 chr1 25329685 25329731 -171865701 + polypurine Low_complexity Low_complexity 1 45 0 4 778 1104 124 0 0 chr1 25329731 25329909 -171865523 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 778 229 194 0 61 chr1 25329909 25329961 -171865471 + polypurine Low_complexity Low_complexity 46 92 0 4 778 994 149 165 0 chr1 25331163 25331357 -171864075 - URR1A DNA MER1_type 0 226 1 4 778 387 272 6 141 chr1 25331360 25331538 -171863894 + B3A SINE B2 39 193 0 4 778 2374 29 0 0 chr1 25331560 25331834 -171863598 + L1Md_F2 LINE L1 5313 5586 -297 4 778 8071 44 2 12 chr1 25331834 25332840 -171862592 + L1Md_F2 LINE L1 5587 6582 0 4 778 932 130 0 6 chr1 25333190 25333352 -171862080 + (TTTC)n Simple_repeat Simple_repeat 3 163 0 4 778 272 284 14 0 chr1 25333840 25333914 -171861518 + ID4_ SINE ID 4 78 -5 4 778 198 71 0 0 chr1 25334279 25334307 -171861125 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 778 6841 92 26 6 chr1 25334740 25336287 -171859145 - L1_Mus2 LINE L1 0 6566 4992 4 778 836 75 0 0 chr1 25336289 25336396 -171859036 - U6 snRNA snRNA 0 107 1 4 778 237 65 0 0 chr1 25336970 25337001 -171858431 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 778 21 57 0 0 chr1 25337539 25337574 -171857858 + AT_rich Low_complexity Low_complexity 1 35 0 4 778 25 0 0 0 chr1 25337591 25337616 -171857816 + AT_rich Low_complexity Low_complexity 1 25 0 4 778 24 32 0 0 chr1 25337762 25337793 -171857639 + AT_rich Low_complexity Low_complexity 1 31 0 4 778 255 103 0 0 chr1 25338898 25338937 -171856495 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 778 542 257 0 0 chr1 25338938 25339047 -171856385 - PB1D9 SINE Alu -1 119 11 4 778 841 46 19 0 chr1 25339359 25339467 -171855965 - L1Md_A LINE L1 -528 6054 5945 4 778 4604 34 0 0 chr1 25339467 25340004 -171855428 + L1Md_T LINE L1 6044 6580 -2 4 778 315 0 0 0 chr1 25340370 25340405 -171855027 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 778 29 28 0 0 chr1 25340407 25340443 -171854989 + AT_rich Low_complexity Low_complexity 1 36 0 4 778 4805 58 41 0 chr1 25340466 25341082 -171854350 - L1_Mus1 LINE L1 0 6567 5927 4 778 516 222 0 27 chr1 25342080 25342191 -171853241 + B3A SINE B2 4 111 -87 4 778 3073 6 0 0 chr1 25342281 25342621 -171852811 - L1Md_A LINE L1 -133 5750 5411 4 778 7411 11 0 0 chr1 25342621 25343452 -171851980 + L1Md_A LINE L1 5752 6582 0 4 778 21 71 0 0 chr1 25343524 25343566 -171851866 + AT_rich Low_complexity Low_complexity 1 42 0 4 778 1331 59 5 5 chr1 25343610 25343796 -171851636 - L1Md_F3 LINE L1 -2 6582 6397 4 778 2447 42 0 0 chr1 25343796 25344085 -171851347 + L1Md_F3 LINE L1 6097 6385 -197 4 778 483 82 0 0 chr1 25345240 25345313 -171850119 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 778 441 347 56 20 chr1 25346080 25346277 -171849155 + MER63A DNA AcHobo 4 207 -3 4 778 229 271 88 100 chr1 25346417 25346577 -171848855 + LTR40a LTR ERVL 350 507 -12 4 778 553 116 39 39 chr1 25346969 25347149 -171848283 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 778 363 214 0 119 chr1 25347169 25347231 -171848201 - B3A SINE B2 -105 93 37 4 778 3236 31 21 0 chr1 25347231 25347619 -171847813 + MTA_Mm LTR MaLR 1 396 0 4 778 363 214 0 119 chr1 25347619 25347657 -171847775 - B3A SINE B2 -162 36 6 4 778 27 73 0 0 chr1 25347977 25348032 -171847400 + AT_rich Low_complexity Low_complexity 1 55 0 4 778 848 183 7 0 chr1 25348155 25348297 -171847135 - B1_Mur3 SINE Alu 0 149 7 4 778 594 0 0 0 chr1 25348431 25348497 -171846935 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 4 778 313 286 12 0 chr1 25349929 25350013 -171845419 - MLT1J LTR MaLR -334 178 94 4 778 612 304 48 19 chr1 25350501 25350769 -171844663 + MER33 DNA MER1_type 49 324 0 5 778 1042 293 105 3 chr1 25352164 25352506 -171842926 + MTE2a LTR MaLR 1 377 -2 5 778 555 262 20 72 chr1 25352818 25352970 -171842462 - B1_Mur3 SINE Alu -2 147 4 5 778 303 28 0 0 chr1 25353077 25353113 -171842319 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 778 1008 130 0 0 chr1 25353178 25353339 -171842093 + (TTCC)n Simple_repeat Simple_repeat 3 163 0 5 778 288 310 46 0 chr1 25353376 25353463 -171841969 - B1F2 SINE Alu -33 116 26 5 778 226 282 134 75 chr1 25354589 25354723 -171840709 + MamRep605 Unknown Unknown 26 167 -709 5 778 2003 274 72 33 chr1 25354772 25355751 -171839681 + L1MA6 LINE L1 5259 6276 -24 5 778 613 286 128 46 chr1 25355756 25356038 -171839394 + MLT1C LTR MaLR 127 431 -36 5 778 361 306 125 4 chr1 25356122 25356362 -171839070 + L1MC4 LINE L1 7373 7641 -401 5 778 435 38 0 0 chr1 25356709 25356762 -171838670 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 778 288 0 0 0 chr1 25357711 25357743 -171837689 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 778 1620 202 66 9 chr1 25358718 25359068 -171836364 + ORR1D1 LTR MaLR 1 370 -4 5 778 1682 235 64 22 chr1 25359724 25360133 -171835299 + RLTR20A LTR ERVK 1 426 -115 5 778 522 290 15 0 chr1 25361127 25361258 -171834174 - B1F SINE Alu -1 148 16 5 778 479 291 54 41 chr1 25361405 25361552 -171833880 + RSINE1 SINE B4 17 165 0 5 778 598 359 37 90 chr1 25361866 25362298 -171833134 + MLT1F2 LTR MaLR 28 436 -124 5 778 267 319 0 0 chr1 25362278 25362350 -171833082 + MLT1F2 LTR MaLR 576 647 -33 5 778 421 330 42 0 chr1 25362395 25362513 -171832919 + MER5A DNA MER1_type 66 188 -1 5 778 39 38 0 0 chr1 25362683 25362736 -171832696 + AT_rich Low_complexity Low_complexity 1 53 0 5 778 198 341 46 34 chr1 25362993 25363139 -171832293 - MIRb SINE MIR -28 234 84 5 778 276 30 0 0 chr1 25363407 25363440 -171831992 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 5 778 361 260 143 131 chr1 25363512 25363862 -171831570 + MLT1A1 LTR MaLR 41 394 -14 5 778 322 359 99 56 chr1 25364053 25364517 -171830915 - L2 LINE L2 -366 3053 2570 5 778 686 271 13 13 chr1 25367275 25367432 -171828000 - ID_B1 SINE B4 -67 157 1 5 778 229 268 35 18 chr1 25368079 25368136 -171827296 - ID4_ SINE ID -24 59 2 5 778 227 103 0 25 chr1 25368365 25368405 -171827027 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 778 294 29 0 0 chr1 25370650 25370685 -171824747 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 778 604 273 0 0 chr1 25370703 25370853 -171824579 - B3A SINE B2 -47 151 2 5 778 351 289 44 7 chr1 25371331 25371467 -171823965 + B1F1 SINE Alu 1 141 -8 5 778 249 128 0 0 chr1 25371549 25371596 -171823836 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 778 209 299 37 7 chr1 25372306 25372392 -171823040 - L2a LINE L2 -1 3425 3284 5 778 327 85 0 0 chr1 25372444 25372491 -171822941 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 778 405 0 0 0 chr1 25372632 25372677 -171822755 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 778 234 0 0 0 chr1 25373505 25373531 -171821901 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 778 1658 268 72 9 chr1 25375096 25375627 -171819805 - Lx7 LINE L1 -289 7407 6844 5 778 230 294 0 35 chr1 25375653 25375766 -171819666 + Lx7 LINE L1 7564 7672 -24 5 778 398 204 11 0 chr1 25377502 25377595 -171817837 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 5 778 501 62 0 0 chr1 25377688 25377753 -171817679 - L1Md_F2 LINE L1 -434 6148 6084 5 778 2379 64 0 0 chr1 25377753 25378051 -171817381 + L1Md_F2 LINE L1 6142 6439 -143 5 778 1292 65 0 0 chr1 25378053 25378223 -171817209 - L1Md_T LINE L1 0 6582 6413 5 778 922 79 6 106 chr1 25378226 25378396 -171817036 + L1Md_F2 LINE L1 6430 6582 0 5 778 1566 181 62 62 chr1 25378817 25379188 -171816244 - ORR1C1 LTR MaLR -7 371 1 5 778 1176 132 113 0 chr1 25380165 25380377 -171815055 + Lx3B LINE L1 6732 6967 -6 5 778 242 256 11 124 chr1 25382139 25382228 -171813204 + ID4_ SINE ID 1 79 -4 5 778 414 0 0 0 chr1 25382276 25382322 -171813110 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 778 322 299 75 43 chr1 25382482 25382643 -171812789 + MLT1A0 LTR MaLR 3 168 -197 5 778 468 0 0 0 chr1 25382645 25382697 -171812735 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 778 924 138 7 0 chr1 25382697 25382842 -171812590 - B1_Mus1 SINE Alu 0 148 3 5 778 259 250 0 18 chr1 25383755 25383812 -171811620 - L2c LINE L2 -57 3330 3275 5 778 406 341 29 18 chr1 25385066 25385236 -171810196 + B4A SINE B4 41 212 -80 5 778 458 177 13 0 chr1 25385377 25385456 -171809976 + RLTR13D5 LTR ERVK 1 80 -953 5 778 23626 79 7 6 chr1 25385456 25390424 -171805008 + L1Md_F2 LINE L1 621 5585 -298 5 778 7816 54 7 2 chr1 25390425 25391401 -171804031 + L1Md_F2 LINE L1 5587 6567 -15 5 778 228 67 0 0 chr1 25391828 25391858 -171803574 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 778 4611 104 29 1 chr1 25391871 25392537 -171802895 + RLTR13D5 LTR ERVK 340 1023 0 5 778 307 319 14 62 chr1 25392537 25392681 -171802751 + B4A SINE B4 148 284 -8 5 778 426 69 0 0 chr1 25392696 25392754 -171802678 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 778 523 297 43 111 chr1 25393696 25393904 -171801528 + B3A SINE B2 1 194 -4 5 778 1335 236 32 27 chr1 25393914 25394284 -171801148 + ORR1D1 LTR MaLR 1 372 -2 5 778 363 257 48 0 chr1 25394336 25394441 -171800991 + PB1D9 SINE Alu 5 114 -6 5 778 1745 81 115 0 chr1 25395493 25395781 -171799651 - L1_Mus3 LINE L1 0 6638 6338 5 778 3999 91 5 9 chr1 25395781 25396338 -171799094 + L1_Mus3 LINE L1 5739 6293 -345 5 778 615 81 0 0 chr1 25396389 25396475 -171798957 + (TC)n Simple_repeat Simple_repeat 2 87 0 5 778 486 192 0 0 chr1 25396476 25396627 -171798805 + (TG)n Simple_repeat Simple_repeat 2 152 0 5 778 789 297 105 44 chr1 25396754 25397096 -171798336 - MLT1A0 LTR MaLR 0 365 3 5 778 859 18 9 9 chr1 25397932 25398042 -171797390 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 778 243 0 0 0 chr1 25398042 25398068 -171797364 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 778 26 64 0 0 chr1 25398380 25398427 -171797005 + AT_rich Low_complexity Low_complexity 1 47 0 5 778 221 353 50 87 chr1 25398987 25399172 -171796260 + L2a LINE L2 3062 3223 -203 5 778 605 243 44 69 chr1 25399172 25399375 -171796057 - B3A SINE B2 0 198 1 5 778 221 353 50 87 chr1 25399375 25399568 -171795864 + L2a LINE L2 3224 3426 0 5 778 587 302 135 8 chr1 25402505 25402772 -171792660 + MLT2C2 LTR ERVL 93 393 -71 5 778 225 262 16 0 chr1 25402827 25402888 -171792544 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 778 329 329 62 50 chr1 25402889 25403068 -171792364 - B3A SINE B2 -15 183 3 5 778 831 288 5 5 chr1 25403760 25403976 -171791456 + B3 SINE B2 1 216 0 5 778 207 275 12 12 chr1 25404174 25404255 -171791177 + (CATA)n Simple_repeat Simple_repeat 2 82 0 5 778 1492 209 87 18 chr1 25404904 25405293 -171790139 + MTD LTR MaLR 2 417 -2 5 778 22 0 0 0 chr1 25405912 25405934 -171789498 + AT_rich Low_complexity Low_complexity 1 22 0 5 778 1104 292 61 29 chr1 25406872 25407250 -171788182 + MTD LTR MaLR 13 402 -17 5 778 326 289 77 44 chr1 25407410 25407591 -171787841 + RMER15 LTR ERVL 373 559 -16 5 778 31 26 0 0 chr1 25407650 25407688 -171787744 + AT_rich Low_complexity Low_complexity 1 38 0 5 778 268 270 52 0 chr1 25408425 25408540 -171786892 + L1_Rod LINE L1 730 850 -6322 5 778 1886 300 75 20 chr1 25408712 25409833 -171785599 + Lx8 LINE L1 2841 4023 -1857 5 778 287 217 50 42 chr1 25409869 25409989 -171785443 + Lx8 LINE L1 4193 4313 -1564 5 778 1254 300 16 16 chr1 25409995 25410313 -171785119 - MTE2b LTR MaLR -10 369 52 5 778 250 297 0 0 chr1 25410325 25410389 -171785043 - MTE2b LTR MaLR -300 79 16 5 778 2125 294 52 39 chr1 25410404 25411079 -171784353 - MTE2b-int LTR MaLR 0 1580 897 5 778 832 278 77 80 chr1 25411079 25411454 -171783978 + MTE2a LTR MaLR 1 374 -5 5 778 812 273 217 108 chr1 25411459 25411688 -171783744 + MTE2a-int LTR MaLR 1 166 -1092 5 778 1793 149 58 0 chr1 25411688 25411997 -171783435 + ORR1A2 LTR MaLR 1 327 0 5 778 1583 273 217 108 chr1 25411997 25412777 -171782655 + MTE2a-int LTR MaLR 167 1301 -279 5 778 5253 39 5 2 chr1 25412777 25413419 -171782013 - L1Md_F3 LINE L1 -15 6569 5926 5 778 812 273 217 108 chr1 25413419 25413535 -171781897 + MTE2a-int LTR MaLR 1116 1250 -8 5 778 285 286 31 63 chr1 25413547 25413674 -171781758 + MTE2a LTR MaLR 3 125 -294 5 778 300 297 0 0 chr1 25413783 25413857 -171781575 - MTE2a LTR MaLR -290 89 16 5 778 682 208 0 8 chr1 25413861 25413987 -171781445 - MTD LTR MaLR 0 419 295 5 778 643 279 30 24 chr1 25413983 25414148 -171781284 - MTD LTR MaLR -246 173 8 5 778 233 118 0 19 chr1 25414189 25414241 -171781191 + (CCA)n Simple_repeat Simple_repeat 2 52 0 5 778 1002 306 103 64 chr1 25414303 25415266 -171780166 + Lx8 LINE L1 4440 5444 -436 5 778 382 302 97 32 chr1 25415266 25415451 -171779981 + B3A SINE B2 2 198 0 5 778 1002 295 72 53 chr1 25415451 25415895 -171779537 + Lx8 LINE L1 5445 5901 -1572 5 778 192 217 0 0 chr1 25415911 25415957 -171779475 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 778 295 306 10 0 chr1 25415970 25416068 -171779364 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 778 241 239 8 8 chr1 25416096 25416214 -171779218 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 778 348 24 0 0 chr1 25416825 25416866 -171778566 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 778 303 327 2 45 chr1 25416896 25416986 -171778446 - B1F1 SINE Alu -21 96 10 5 778 189 74 0 0 chr1 25417559 25417586 -171777846 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5 778 208 175 25 0 chr1 25417695 25417735 -171777697 + (TATG)n Simple_repeat Simple_repeat 4 44 0 5 778 185 324 110 9 chr1 25418062 25418171 -171777261 + MIRb SINE MIR 79 198 -70 5 778 28 29 0 0 chr1 25418428 25418463 -171776969 + AT_rich Low_complexity Low_complexity 1 35 0 5 778 24 0 0 0 chr1 25419387 25419411 -171776021 + AT_rich Low_complexity Low_complexity 1 24 0 5 778 279 292 119 30 chr1 25420046 25420178 -171775254 + MIRb SINE MIR 38 195 -73 5 778 198 0 0 0 chr1 25420844 25420866 -171774566 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 778 1166 42 0 14 chr1 25420866 25421003 -171774429 - B1_Mm SINE Alu -10 137 1 5 778 228 67 0 0 chr1 25422194 25422224 -171773208 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 5 778 485 131 31 0 chr1 25422555 25422685 -171772747 + GA-rich Low_complexity Low_complexity 1 134 0 5 778 1532 297 119 38 chr1 25422884 25424317 -171771115 + L1MA4A LINE L1 2381 3929 -2214 5 778 963 287 92 22 chr1 25424368 25425088 -171770344 + L1MA4A LINE L1 5080 5861 -442 5 778 370 315 0 18 chr1 25425477 25425587 -171769845 + PB1D10 SINE Alu 10 117 0 6 778 390 340 18 60 chr1 25425814 25425980 -171769452 - B3 SINE B2 -57 159 1 6 778 4082 68 22 18 chr1 25426368 25426924 -171768508 - L1_Mus2 LINE L1 0 6566 6009 6 779 387 0 0 0 chr1 25428222 25428265 -171767167 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 779 362 202 35 12 chr1 25428322 25428407 -171767025 + MTC LTR MaLR 335 421 0 6 779 347 295 56 35 chr1 25429919 25430063 -171765369 + B1F SINE Alu 3 149 0 6 779 1149 69 0 14 chr1 25430094 25430241 -171765191 + B1_Mus1 SINE Alu 3 147 -1 6 779 29 0 0 0 chr1 25430273 25430302 -171765130 + AT_rich Low_complexity Low_complexity 1 29 0 6 779 258 32 0 0 chr1 25430360 25430391 -171765041 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 779 414 185 0 0 chr1 25430637 25430718 -171764714 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 779 250 379 46 23 chr1 25431253 25431426 -171764006 - MER20 DNA MER1_type -4 215 39 6 779 2854 169 50 25 chr1 25431508 25432110 -171763322 + RMER6C LTR ERVK 1 617 -73 6 779 462 202 10 0 chr1 25432116 25432220 -171763212 + Lx9 LINE L1 7529 7633 -11 6 779 445 264 69 23 chr1 25432283 25432500 -171762932 + L1MA6 LINE L1 5710 5936 -364 6 779 660 305 120 8 chr1 25432754 25432995 -171762437 + B4A SINE B4 2 269 -23 6 779 312 175 0 0 chr1 25432996 25433093 -171762339 + CT-rich Low_complexity Low_complexity 2 98 0 6 779 483 18 0 0 chr1 25433146 25433202 -171762230 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 779 192 135 0 0 chr1 25433207 25433244 -171762188 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 779 800 249 35 12 chr1 25435234 25435405 -171760027 + Lx8 LINE L1 6943 7117 -356 6 779 417 289 92 23 chr1 25435953 25436084 -171759348 + Lx8 LINE L1 7155 7294 -179 6 779 387 0 0 0 chr1 25436332 25436375 -171759057 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 779 246 62 0 0 chr1 25438086 25438118 -171757314 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 779 303 269 44 131 chr1 25438119 25438256 -171757176 - RSINE1 SINE B4 -36 129 5 6 779 23 0 0 0 chr1 25438591 25438614 -171756818 + AT_rich Low_complexity Low_complexity 1 23 0 6 779 193 298 46 35 chr1 25438657 25438744 -171756688 - MER5A DNA MER1_type -50 139 52 6 779 237 33 0 0 chr1 25439254 25439284 -171756148 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 6 779 405 0 0 0 chr1 25439406 25439451 -171755981 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 779 313 359 63 33 chr1 25439580 25439851 -171755581 + B4A SINE B4 4 282 -10 6 779 29 0 0 0 chr1 25439907 25439936 -171755496 + AT_rich Low_complexity Low_complexity 1 29 0 6 779 241 351 0 13 chr1 25439956 25440034 -171755398 + ID4 SINE ID 6 82 -1 6 779 196 264 75 0 chr1 25440690 25440743 -171754689 - MIRm SINE MIR -6 270 214 6 779 451 236 142 0 chr1 25441187 25441306 -171754126 - MLT1A0 LTR MaLR -37 328 192 6 779 880 270 119 45 chr1 25441306 25441659 -171753773 - MTEb LTR MaLR 0 379 1 6 779 23 0 0 0 chr1 25443160 25443183 -171752249 + AT_rich Low_complexity Low_complexity 1 23 0 6 779 215 179 0 35 chr1 25443214 25443272 -171752160 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 6 779 1097 92 0 0 chr1 25443673 25443815 -171751617 + B1_Mus2 SINE Alu 1 142 -5 6 779 429 20 0 0 chr1 25443816 25443866 -171751566 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 779 29 47 0 0 chr1 25444224 25444267 -171751165 + AT_rich Low_complexity Low_complexity 1 43 0 6 779 400 297 39 0 chr1 25445122 25445250 -171750182 - B2_Mm2 SINE B2 -62 133 1 6 779 4923 77 36 9 chr1 25446554 25447250 -171748182 + L1_Mus1 LINE L1 5852 6566 -1 6 779 217 48 23 45 chr1 25447331 25447375 -171748057 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 779 432 227 187 33 chr1 25447693 25447875 -171747557 + L1_Mur3 LINE L1 859 1068 -6660 6 779 1510 140 345 12 chr1 25447875 25448308 -171747124 + RLTR25B LTR ERVK 509 1028 0 6 779 1819 174 34 8 chr1 25448309 25448692 -171746740 + L1_Mur3 LINE L1 4924 5316 -564 6 779 2503 71 6 0 chr1 25448733 25449070 -171746362 - L1Md_T LINE L1 0 6582 6244 6 779 1755 258 138 0 chr1 25449070 25449586 -171745846 + Lx6 LINE L1 6560 7146 -314 6 779 476 282 8 8 chr1 25449605 25449723 -171745709 + B1F2 SINE Alu 31 148 -1 6 779 7379 90 6 0 chr1 25450505 25451916 -171743516 - L1_Mus1 LINE L1 -2 6565 5145 6 779 196 375 11 11 chr1 25454200 25454289 -171741143 - L3 LINE CR1 -518 3971 3883 6 779 349 314 27 68 chr1 25454349 25454496 -171740936 - L3 LINE CR1 -805 3684 3544 6 779 207 0 0 0 chr1 25454891 25454914 -171740518 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 779 682 270 68 11 chr1 25455437 25455480 -171739952 - B3 SINE B2 -12 204 162 6 779 348 24 0 0 chr1 25455480 25455521 -171739911 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 779 682 270 68 11 chr1 25455521 25455668 -171739764 - B3 SINE B2 -55 161 3 6 779 1952 132 36 33 chr1 25455822 25456181 -171739251 - Lx2 LINE L1 -41 6956 6597 6 779 458 250 39 0 chr1 25457480 25457584 -171737848 + B3A SINE B2 3 110 -88 6 779 512 100 12 0 chr1 25457634 25457714 -171737718 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 779 347 0 0 23 chr1 25459177 25459221 -171736211 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 6 779 250 156 31 0 chr1 25459760 25459824 -171735608 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 779 474 301 12 12 chr1 25459859 25460027 -171735405 + Lx9 LINE L1 6829 6996 -648 6 779 35144 47 1 3 chr1 25460069 25465288 -171730144 + L1Md_T LINE L1 288 5588 -298 6 779 8293 42 0 0 chr1 25465289 25466285 -171729147 + L1Md_T LINE L1 5590 6585 0 6 779 501 298 143 9 chr1 25466296 25466526 -171728906 + Lx9 LINE L1 7134 7394 -250 6 779 262 200 0 0 chr1 25466806 25466866 -171728566 + CT-rich Low_complexity Low_complexity 2 61 0 6 779 333 208 0 0 chr1 25467088 25467160 -171728272 + GA-rich Low_complexity Low_complexity 2 73 0 6 779 457 261 17 8 chr1 25468137 25468257 -171727175 - MLT1E2 LTR MaLR -4 623 503 6 779 2003 209 48 0 chr1 25468265 25468663 -171726769 - MTD LTR MaLR -2 417 1 6 779 324 261 0 52 chr1 25469077 25469174 -171726258 - MLT1E2 LTR MaLR -535 92 1 6 779 395 373 48 11 chr1 25469182 25469252 -171726180 + MER58A DNA MER1_type 31 107 -117 6 779 258 106 0 0 chr1 25469252 25469299 -171726133 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 779 395 373 48 11 chr1 25469299 25469415 -171726017 + MER58A DNA MER1_type 108 224 0 6 779 6375 78 17 11 chr1 25469990 25470570 -171724862 + L1_Mus3 LINE L1 5751 6328 -310 6 779 2410 141 27 89 chr1 25470570 25471084 -171724348 + RLTR45 LTR ERVK 1 482 0 6 779 6375 78 17 11 chr1 25471084 25471386 -171724046 + L1_Mus3 LINE L1 6329 6638 0 6 779 238 167 0 32 chr1 25471504 25471566 -171723866 + T-rich Low_complexity Low_complexity 3 62 0 6 779 2507 88 121 11 chr1 25473130 25473509 -171721923 + BGLII LTR ERVK 1 421 0 6 779 329 335 63 77 chr1 25473875 25474160 -171721272 + ORR1E LTR MaLR 79 359 0 6 779 3518 43 2 3 chr1 25474164 25474654 -171720778 - L1_Mus3 LINE L1 -485 6081 5605 6 779 4038 87 8 71 chr1 25474654 25475286 -171720146 + L1_Mus3 LINE L1 6046 6637 -1 6 779 249 369 23 23 chr1 25475628 25475761 -171719671 - LTR90A LTR LTR -10 966 834 6 779 823 167 65 0 chr1 25475909 25476077 -171719355 - B2_Mm2 SINE B2 -15 180 2 6 779 809 71 0 0 chr1 25476442 25476540 -171718892 + L1_Mus3 LINE L1 6140 6237 -401 6 779 564 236 107 93 chr1 25476604 25476753 -171718679 - B3 SINE B2 -4 212 54 6 779 1103 67 0 0 chr1 25476753 25476888 -171718544 + B1_Mus2 SINE Alu 1 135 -12 6 779 306 0 0 0 chr1 25476889 25476923 -171718509 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 779 564 236 107 93 chr1 25476923 25476976 -171718456 - B3 SINE B2 -163 53 5 6 779 1297 42 18 0 chr1 25478270 25478436 -171716996 - L1_Mus1 LINE L1 -528 6039 5871 6 779 4062 68 2 6 chr1 25478436 25478965 -171716467 + L1_Mus1 LINE L1 6041 6567 0 6 779 1653 168 93 46 chr1 25479296 25479402 -171716030 + Lx4B LINE L1 6649 6759 -299 6 779 402 21 0 0 chr1 25479402 25479449 -171715983 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 779 1653 168 93 46 chr1 25479449 25479730 -171715702 + Lx4B LINE L1 6760 7054 -4 6 779 198 0 0 0 chr1 25480152 25480174 -171715258 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 779 324 0 0 0 chr1 25480174 25480209 -171715223 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 779 862 101 58 0 chr1 25480212 25480350 -171715082 - L1_Mus3 LINE L1 -16 6622 6477 6 779 24 53 0 0 chr1 25481137 25481175 -171714257 + AT_rich Low_complexity Low_complexity 1 38 0 6 779 814 295 119 36 chr1 25481661 25482762 -171712670 + L1M3 LINE L1 2270 3461 -2679 6 779 265 109 36 0 chr1 25482765 25482820 -171712612 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 779 227 164 54 18 chr1 25482941 25482997 -171712435 + L1M3 LINE L1 3558 3615 -2528 6 779 24 32 0 0 chr1 25483352 25483383 -171712049 + AT_rich Low_complexity Low_complexity 1 31 0 6 779 981 233 5 0 chr1 25483385 25483595 -171711837 + B3 SINE B2 2 212 -4 6 779 389 269 54 81 chr1 25484142 25484328 -171711104 - B3A SINE B2 -16 182 2 6 779 195 265 56 67 chr1 25484818 25484907 -171710525 + MIRc SINE MIR 68 155 -113 6 779 212 435 0 0 chr1 25485045 25485130 -171710302 - PB1D10 SINE Alu -32 85 1 6 779 222 175 35 17 chr1 25485300 25485358 -171710074 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 779 352 330 125 0 chr1 25485361 25485473 -171709959 - RSINE1 SINE B4 -6 159 34 6 779 208 170 0 54 chr1 25485867 25485923 -171709509 + A-rich Low_complexity Low_complexity 4 56 0 6 779 500 278 53 0 chr1 25486074 25486301 -171709131 - L1MA6 LINE L1 -23 6277 6039 6 779 185 220 200 0 chr1 25486389 25486439 -171708993 - MIR3 SINE MIR -25 183 124 6 779 210 225 0 0 chr1 25486565 25486605 -171708827 + CT-rich Low_complexity Low_complexity 4 43 0 6 779 502 186 31 0 chr1 25490103 25490200 -171705232 - B3 SINE B2 0 216 117 6 779 27 62 0 0 chr1 25490424 25490472 -171704960 + AT_rich Low_complexity Low_complexity 1 48 0 6 779 632 163 16 0 chr1 25492893 25493016 -171702416 + CT-rich Low_complexity Low_complexity 3 127 0 6 779 693 335 5 33 chr1 25493414 25493627 -171701805 + ID_B1 SINE B4 18 224 0 6 779 275 0 0 28 chr1 25493627 25493663 -171701769 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 6 779 254 296 117 27 chr1 25493761 25493872 -171701560 + MIR SINE MIR 76 196 -66 7 779 236 154 0 103 chr1 25493947 25494005 -171701427 - L1M6 LINE L1 -4659 1837 1786 7 779 208 204 37 0 chr1 25494230 25494284 -171701148 + CT-rich Low_complexity Low_complexity 4 59 0 7 779 1431 50 0 0 chr1 25494325 25494505 -171700927 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 7 779 275 167 0 32 chr1 25494507 25494569 -171700863 + CT-rich Low_complexity Low_complexity 3 62 0 7 779 182 241 18 36 chr1 25495313 25495369 -171700063 - L2a LINE L2 -1 3425 3371 7 779 215 298 167 50 chr1 25495460 25495580 -171699852 - MIRb SINE MIR -107 161 24 7 779 1207 41 7 0 chr1 25496117 25496263 -171699169 + B1_Mm SINE Alu 1 147 0 7 779 204 67 0 0 chr1 25496360 25496390 -171699042 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7 779 685 298 97 56 chr1 25496778 25497098 -171698334 + MER58B DNA MER1_type 1 333 -8 7 779 239 133 22 0 chr1 25498055 25498100 -171697332 + GA-rich Low_complexity Low_complexity 5 50 0 7 779 360 0 0 0 chr1 25498172 25498212 -171697220 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 779 1238 85 6 0 chr1 25498229 25498406 -171697026 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 779 1577 64 0 0 chr1 25498512 25498714 -171696718 + L1_Mus1 LINE L1 6366 6567 0 7 779 22 35 0 0 chr1 25498717 25498746 -171696686 + AT_rich Low_complexity Low_complexity 1 29 0 7 779 249 354 38 8 chr1 25498836 25498967 -171696465 - L2a LINE L2 0 3426 3292 7 779 21 36 0 0 chr1 25499560 25499588 -171695844 + AT_rich Low_complexity Low_complexity 1 28 0 7 779 306 235 0 0 chr1 25499932 25500000 -171695432 - PB1D10 SINE Alu -3 114 47 7 779 181 57 0 54 chr1 25501421 25501458 -171693974 + (TAAAA)n Simple_repeat Simple_repeat 5 39 0 1 779 24 0 0 0 chr1 25502716 25502740 -171692692 + AT_rich Low_complexity Low_complexity 1 24 0 2 779 773 260 142 41 chr1 25503133 25503478 -171691954 - RLTR40 LTR ERVK -151 666 287 3 779 292 227 181 32 chr1 25503478 25503633 -171691799 - RLTR21 LTR ERVK -318 1254 1077 4 779 345 350 87 70 chr1 25504123 25504479 -171690953 + L2a LINE L2 3031 3392 -34 5 779 486 277 76 191 chr1 25506355 25506727 -171688705 - MTD LTR MaLR 0 419 104 6 779 528 30 0 0 chr1 25506727 25506793 -171688639 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 779 486 277 76 191 chr1 25506793 25506870 -171688562 - MTD LTR MaLR -316 103 22 6 779 381 256 50 25 chr1 25506883 25507003 -171688429 - B3 SINE B2 0 216 94 8 779 21 0 0 0 chr1 25507179 25507200 -171688232 + AT_rich Low_complexity Low_complexity 1 21 0 9 779 1084 208 5 0 chr1 25507374 25507571 -171687861 - B3 SINE B2 -14 202 5 1 779 235 294 103 0 chr1 25507619 25507687 -171687745 - PB1D10 SINE Alu -20 97 23 1 779 548 182 30 0 chr1 25507915 25508014 -171687418 + U6 snRNA snRNA 1 102 -5 1 779 21 0 0 0 chr1 25508015 25508036 -171687396 + AT_rich Low_complexity Low_complexity 1 21 0 1 779 458 262 91 43 chr1 25508863 25509050 -171686382 + CYRA11_Mm Unknown Y-chromosome 150 345 -272 1 779 1096 180 57 0 chr1 25508890 25509084 -171686348 - URR1B DNA MER1_type -4 221 17 1 779 225 264 0 0 chr1 25509930 25509983 -171685449 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 779 288 0 0 0 chr1 25509983 25510015 -171685417 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 779 549 315 81 32 chr1 25510210 25510495 -171684937 + RMER15 LTR ERVL 275 573 -2 1 779 1042 366 101 27 chr1 25510517 25511149 -171684283 + RMER15-int LTR ERVL 27 708 -4291 1 779 1031 95 0 7 chr1 25511149 25511283 -171684149 + B1_Mus1 SINE Alu 2 135 -13 1 779 243 0 0 0 chr1 25511283 25511310 -171684122 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 2 779 1031 95 0 7 chr1 25511310 25511323 -171684109 + B1_Mus1 SINE Alu 136 147 -1 1 779 1477 346 68 33 chr1 25511323 25512135 -171683297 + RMER15-int LTR ERVL 709 1545 -3454 1 779 416 265 52 13 chr1 25512777 25512930 -171682502 + RMER15-int LTR ERVL 4245 4403 -596 1 779 283 291 12 12 chr1 25513056 25513136 -171682296 + RMER15-int LTR ERVL 4886 4965 -34 1 779 609 361 25 21 chr1 25513350 25513630 -171681802 + RMER15 LTR ERVL 279 559 -16 1 779 359 315 27 14 chr1 25515262 25515410 -171680022 + MER67C LTR ERV1 14 163 -548 2 779 259 48 0 0 chr1 25515860 25515902 -171679530 - L1_Mus2 LINE L1 0 6566 6525 2 779 181 197 14 153 chr1 25517685 25517757 -171677675 + L4 LINE RTE 305 366 -1663 2 779 2861 97 34 16 chr1 25517788 25518229 -171677203 + Lx2 LINE L1 6549 6997 0 2 779 820 328 21 14 chr1 25519580 25519868 -171675564 + MamSINE1 SINE tRNA 1 290 0 2 779 357 245 118 36 chr1 25520666 25520776 -171674656 - B1F2 SINE Alu -7 142 24 2 779 1116 102 0 0 chr1 25521232 25521379 -171674053 - B1_Mus1 SINE Alu 0 148 2 2 779 324 0 0 0 chr1 25521501 25521537 -171673895 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 779 307 351 79 0 chr1 25522599 25522713 -171672719 - HAL1-3A_ME LINE L1 -452 2406 2284 2 779 282 56 0 0 chr1 25522713 25522749 -171672683 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 3 779 1076 286 60 57 chr1 25523355 25523707 -171671725 + ORR1E LTR MaLR 2 354 -5 3 779 263 238 48 0 chr1 25523724 25523787 -171671645 + BC1_Mm scRNA scRNA 19 84 -68 3 779 342 0 0 0 chr1 25523791 25523829 -171671603 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 779 309 26 0 0 chr1 25523829 25523867 -171671565 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 779 526 308 119 58 chr1 25523920 25524172 -171671260 + MLT1A1 LTR MaLR 77 348 -60 3 779 1185 84 0 0 chr1 25524172 25524339 -171671093 + (TCTTG)n Simple_repeat Simple_repeat 2 168 0 3 779 526 308 119 58 chr1 25524339 25524396 -171671036 + MLT1A1 LTR MaLR 349 405 -3 3 779 942 140 0 16 chr1 25525119 25525301 -171670131 + G-rich Low_complexity Low_complexity 1 179 0 3 779 1001 333 52 15 chr1 25527186 25527704 -171667728 + Lx8 LINE L1 6906 7442 -31 3 779 23 0 0 0 chr1 25527723 25527746 -171667686 + AT_rich Low_complexity Low_complexity 1 23 0 3 779 208 244 12 37 chr1 25527928 25528009 -171667423 + (CTATA)n Simple_repeat Simple_repeat 1 79 0 4 779 262 123 35 0 chr1 25528322 25528379 -171667053 + CT-rich Low_complexity Low_complexity 2 60 0 4 779 339 25 0 0 chr1 25528379 25528419 -171667013 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 779 657 66 0 0 chr1 25528509 25528600 -171666832 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 779 547 112 9 27 chr1 25528719 25528829 -171666603 - L1Md_F2 LINE L1 0 6582 6475 4 779 3135 51 0 8 chr1 25528985 25529381 -171666051 + L1Md_F2 LINE L1 6178 6570 -12 4 779 466 332 48 84 chr1 25530587 25530896 -171664536 + MLT1B LTR MaLR 1 298 -92 4 779 274 328 15 45 chr1 25531153 25531277 -171664155 + RSINE1 SINE B4 21 141 -24 4 779 390 21 0 0 chr1 25531277 25531324 -171664108 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 779 314 198 0 44 chr1 25531349 25531439 -171663993 + Lx3C LINE L1 6857 6942 -34 4 779 432 0 0 0 chr1 25531653 25531701 -171663731 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 779 30 0 0 0 chr1 25531711 25531741 -171663691 + AT_rich Low_complexity Low_complexity 1 30 0 5 779 23 33 0 0 chr1 25531969 25531999 -171663433 + AT_rich Low_complexity Low_complexity 1 30 0 5 779 3951 147 77 21 chr1 25533436 25534163 -171661269 + Lx2B LINE L1 6233 7000 0 5 779 1844 172 114 8 chr1 25534386 25534855 -171660577 + RMER4B LTR ERVK 32 585 0 5 779 1237 193 11 23 chr1 25534884 25535043 -171660389 + MurERV4-int LTR ERVK 40 195 -5065 5 779 237 33 0 0 chr1 25535043 25535073 -171660359 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 779 1237 193 11 23 chr1 25535073 25535173 -171660259 + MurERV4-int LTR ERVK 196 296 -4964 5 779 670 138 16 0 chr1 25535178 25535301 -171660131 + GA-rich Low_complexity Low_complexity 2 126 0 5 779 585 0 0 0 chr1 25535301 25535366 -171660066 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 5 779 860 214 0 160 chr1 25535388 25535650 -171659782 + MurERV4-int LTR ERVK 1074 1293 -3967 5 779 1501 193 29 32 chr1 25535691 25536001 -171659431 + RMER4B LTR ERVK 18 326 -259 5 779 240 250 0 106 chr1 25536141 25536226 -171659206 + ORR1D1 LTR MaLR 297 372 -2 6 779 21 0 0 0 chr1 25536619 25536640 -171658792 + AT_rich Low_complexity Low_complexity 1 21 0 6 779 586 326 92 48 chr1 25537262 25537477 -171657955 - MER82 DNA MER2_type -43 610 391 6 779 264 59 0 0 chr1 25537477 25537511 -171657921 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 779 324 0 0 0 chr1 25537517 25537553 -171657879 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 779 586 297 368 16 chr1 25537553 25537832 -171657600 - MER82 DNA MER2_type -274 379 1 6 779 941 94 6 36 chr1 25539515 25539681 -171655751 - L1_Mus4 LINE L1 -7 6629 6469 6 779 729 264 39 11 chr1 25539711 25539891 -171655541 + B3 SINE B2 7 191 -25 6 779 21 0 0 0 chr1 25540025 25540046 -171655386 + AT_rich Low_complexity Low_complexity 1 21 0 6 779 2241 180 44 20 chr1 25540067 25540553 -171654879 + RLTR11A LTR ERVK 1 528 0 6 779 201 154 0 0 chr1 25542031 25542070 -171653362 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 779 464 275 30 15 chr1 25542326 25542459 -171652973 + B1F2 SINE Alu 15 149 0 7 779 21 71 0 0 chr1 25544055 25544097 -171651335 + AT_rich Low_complexity Low_complexity 1 42 0 7 779 425 255 69 0 chr1 25545311 25545413 -171650019 + B1F SINE Alu 18 126 -23 7 779 293 310 44 9 chr1 25545413 25545424 -171650008 + ID_B1 SINE B4 99 215 -9 7 779 36 94 0 0 chr1 25545987 25546093 -171649339 + AT_rich Low_complexity Low_complexity 1 106 0 7 779 219 69 0 0 chr1 25546093 25546122 -171649310 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 779 373 361 16 0 chr1 25546146 25546268 -171649164 - RSINE1 SINE B4 -38 127 4 7 779 2186 98 25 0 chr1 25546284 25546602 -171648830 + ORR1A2 LTR MaLR 2 327 0 7 779 288 0 0 0 chr1 25546684 25546716 -171648716 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 779 405 0 0 0 chr1 25546843 25546888 -171648544 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 779 581 364 33 8 chr1 25547130 25547371 -171648061 + LFSINE_Vert SINE SINE 1 247 -212 8 779 182 280 38 62 chr1 25549285 25549365 -171646067 + L2c LINE L2 3252 3329 -58 8 779 521 178 46 9 chr1 25549580 25549688 -171645744 + Lx9 LINE L1 7352 7463 -181 8 779 239 327 35 80 chr1 25549688 25549801 -171645631 - RMER12 LTR ERVK -472 850 743 8 779 21 0 0 0 chr1 25550320 25550341 -171645091 + AT_rich Low_complexity Low_complexity 1 21 0 8 779 260 350 40 0 chr1 25552039 25552139 -171643293 + ORR1D1 LTR MaLR 19 122 -237 8 779 360 317 109 56 chr1 25552267 25552534 -171642898 + ORR1D1 LTR MaLR 86 366 -8 8 779 1693 194 18 67 chr1 25553015 25553406 -171642026 + ORR1C1 LTR MaLR 3 374 -4 8 779 2981 104 20 7 chr1 25553681 25554124 -171641308 + Lx LINE L1 6201 6649 -5 8 779 1023 122 7 0 chr1 25554395 25554542 -171640890 + B1_Mus1 SINE Alu 1 148 0 8 779 3900 87 2 8 chr1 25555180 25555714 -171639718 - L1Md_F2 LINE L1 -2 6580 6050 8 779 3997 63 0 4 chr1 25555714 25556422 -171639010 + L1Md_F2 LINE L1 5390 6094 -488 8 779 480 62 0 0 chr1 25556852 25556916 -171638516 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 779 228 184 0 0 chr1 25556968 25557017 -171638415 + CT-rich Low_complexity Low_complexity 1 49 0 9 779 222 299 24 18 chr1 25558072 25558239 -171637193 + (TA)n Simple_repeat Simple_repeat 1 168 0 9 779 2915 128 38 15 chr1 25558529 25559006 -171636426 + L1Md_F2 LINE L1 6160 6647 -7 8 780 516 77 13 0 chr1 25559178 25559256 -171636176 - L1_Mus2 LINE L1 0 6566 6488 9 780 258 61 0 0 chr1 25559256 25559289 -171636143 + L1_Mus2 LINE L1 5887 5919 -647 9 780 226 188 33 82 chr1 25559832 25559954 -171635478 + (TTATA)n Simple_repeat Simple_repeat 4 119 0 9 780 216 97 0 0 chr1 25560383 25560414 -171635018 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 780 243 103 0 0 chr1 25562248 25562287 -171633145 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 780 248 188 0 20 chr1 25562292 25562341 -171633091 - ID4 SINE ID -34 49 2 9 780 21 36 0 0 chr1 25562395 25562423 -171633009 + AT_rich Low_complexity Low_complexity 1 28 0 9 780 404 138 124 35 chr1 25562471 25562584 -171632848 - Lx9 LINE L1 -1 7643 7521 1 780 492 18 0 0 chr1 25562584 25562641 -171632791 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 1 780 210 37 0 0 chr1 25563539 25563566 -171631866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 780 858 161 7 0 chr1 25563566 25563703 -171631729 - B1_Mus1 SINE Alu -9 139 2 1 780 469 243 20 68 chr1 25564543 25564689 -171630743 - B1_Mur1 SINE Alu -10 139 1 1 780 557 28 14 0 chr1 25564731 25564802 -171630630 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 780 210 250 0 0 chr1 25566540 25566588 -171628844 + L2a LINE L2 3332 3418 -8 1 780 306 106 0 0 chr1 25567995 25568042 -171627390 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 780 1085 275 51 35 chr1 25568755 25569150 -171626282 - MTD LTR MaLR -14 405 12 1 780 2004 207 15 43 chr1 25569679 25570149 -171625283 + Lx9 LINE L1 7000 7456 -188 1 780 312 27 0 0 chr1 25570149 25570186 -171625246 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 780 388 179 132 0 chr1 25570186 25570292 -171625140 + Lx9 LINE L1 7522 7641 -3 1 780 3641 61 0 41 chr1 25570500 25570993 -171624439 - L1_Mus2 LINE L1 0 6566 6094 1 780 1997 131 19 3 chr1 25574134 25574455 -171620977 + ORR1A3 LTR MaLR 1 326 0 1 780 1206 298 44 18 chr1 25574456 25574846 -171620586 - MTD LTR MaLR -19 400 1 1 780 460 196 415 19 chr1 25575075 25575336 -171620096 - Lx4B LINE L1 -36 7022 6678 1 780 275 320 37 79 chr1 25575619 25575809 -171619623 + MER5A DNA MER1_type 8 189 0 1 780 37935 30 0 0 chr1 25577188 25583391 -171612041 - L1Md_T LINE L1 0 6585 285 1 780 402 316 86 0 chr1 25584408 25584547 -171610885 + RSINE1 SINE B4 8 158 -7 1 780 959 201 1205 50 chr1 25584617 25584645 -171610787 - L1_Mus3 LINE L1 -739 5899 5896 1 780 3766 69 24 0 chr1 25584645 25585137 -171610295 - L1_Mus1 LINE L1 0 6567 6064 1 780 959 68 0 15 chr1 25585137 25585265 -171610167 - L1_Mus3 LINE L1 -743 5895 5768 1 780 754 280 210 39 chr1 25585442 25585747 -171609685 - MTE2b LTR MaLR -10 369 13 1 780 2623 336 44 12 chr1 25585758 25586731 -171608701 - MTE2b-int LTR MaLR -2 1578 575 1 780 180 111 0 0 chr1 25586796 25586823 -171608609 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 1 780 211 304 12 12 chr1 25586831 25586911 -171608521 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 780 1226 264 66 59 chr1 25587028 25587500 -171607932 - MTE2b-int LTR MaLR -1100 480 6 1 780 634 262 129 20 chr1 25587507 25587812 -171607620 - MTE2b LTR MaLR -2 377 1 1 780 240 137 0 0 chr1 25588143 25588194 -171607238 + (A)n Simple_repeat Simple_repeat 1 51 0 1 780 450 53 0 0 chr1 25588604 25588661 -171606771 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 780 659 285 52 19 chr1 25589698 25589909 -171605523 + MTEb LTR MaLR 1 218 -161 1 780 426 20 0 0 chr1 25593599 25593650 -171601782 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 780 275 315 26 47 chr1 25593721 25593914 -171601518 + L1MA4 LINE L1 2223 2411 -3732 1 780 1191 260 44 61 chr1 25594025 25594619 -171600813 + L1MA4 LINE L1 3044 3627 -2516 1 780 1522 191 52 52 chr1 25594637 25594985 -171600447 + ORR1C2 LTR MaLR 37 384 0 1 780 525 286 59 48 chr1 25594994 25595369 -171600063 + L1MA4 LINE L1 3645 4023 -2120 1 780 1473 275 48 22 chr1 25595395 25595997 -171599435 + L1MA4 LINE L1 3970 4587 -1556 1 780 854 308 79 11 chr1 25596009 25596275 -171599157 + MTE2b LTR MaLR 1 284 -95 1 780 2338 319 95 27 chr1 25596270 25597414 -171598018 + MTE2b-int LTR MaLR 102 1323 -257 1 780 525 338 13 27 chr1 25597483 25597632 -171597800 - RSINE1 SINE B4 -18 147 1 1 780 371 274 92 26 chr1 25597632 25597849 -171597583 + MTE2b-int LTR MaLR 1201 1578 -2 1 780 895 312 41 47 chr1 25597851 25598194 -171597238 + MTE2b LTR MaLR 1 341 -38 1 780 286 306 60 82 chr1 25598239 25598605 -171596827 + L1MA4 LINE L1 4598 4955 -1188 1 780 414 285 153 12 chr1 25598740 25599166 -171596266 + L1MA4 LINE L1 5137 5622 -678 1 780 500 285 180 1 chr1 25599206 25599505 -171595927 + L1MA4 LINE L1 5721 6076 -224 1 780 27 0 0 0 chr1 25599721 25599748 -171595684 + AT_rich Low_complexity Low_complexity 1 27 0 1 780 369 0 0 0 chr1 25600198 25600239 -171595193 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 780 200 378 70 16 chr1 25601422 25601551 -171593881 - MIR3 SINE MIR -63 145 10 1 780 651 238 134 13 chr1 25602172 25602410 -171593022 + MER90a LTR ERV1 228 494 -120 1 780 342 0 0 0 chr1 25602625 25602663 -171592769 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 780 885 262 45 141 chr1 25603023 25603441 -171591991 + MTE2b LTR MaLR 2 379 0 1 780 230 282 26 0 chr1 25605662 25605740 -171589692 - L1MA8 LINE L1 -87 6204 6125 1 780 279 0 0 0 chr1 25605799 25605830 -171589602 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 780 342 0 0 0 chr1 25606109 25606147 -171589285 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 780 552 126 0 0 chr1 25606533 25606620 -171588812 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 780 443 318 84 61 chr1 25607358 25607572 -171587860 + MER20 DNA MER1_type 1 219 0 1 780 22 0 0 0 chr1 25608238 25608260 -171587172 + AT_rich Low_complexity Low_complexity 1 22 0 1 780 218 115 57 19 chr1 25609361 25609414 -171586018 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 780 264 278 11 0 chr1 25609437 25609527 -171585905 - L1MB2 LINE L1 -24 6147 6057 1 780 645 233 39 54 chr1 25613739 25613943 -171581489 - B3 SINE B2 0 216 16 1 780 21 0 0 0 chr1 25615365 25615386 -171580046 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 25 0 0 0 chr1 25615932 25615957 -171579475 + AT_rich Low_complexity Low_complexity 1 25 0 1 780 184 184 0 73 chr1 25617006 25617047 -171578385 + L2 LINE L2 1283 1320 -2099 1 780 26 30 0 0 chr1 25618850 25618883 -171576549 + AT_rich Low_complexity Low_complexity 1 33 0 1 780 288 55 40 40 chr1 25619265 25619340 -171576092 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 1 780 1173 61 0 7 chr1 25619340 25619488 -171575944 - B1_Mm SINE Alu 0 147 1 1 780 272 284 0 0 chr1 25620760 25620834 -171574598 - ID_B1 SINE B4 -5 219 146 1 780 31 0 0 0 chr1 25621343 25621374 -171574058 + AT_rich Low_complexity Low_complexity 1 31 0 1 780 2423 87 48 40 chr1 25621545 25621916 -171573516 + L1Md_F2 LINE L1 6197 6570 -12 1 780 263 294 86 29 chr1 25622239 25622344 -171573088 - B4A SINE B4 -166 126 16 1 780 387 0 0 0 chr1 25623246 25623289 -171572143 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 780 27 0 0 0 chr1 25624063 25624090 -171571342 + AT_rich Low_complexity Low_complexity 1 27 0 1 780 326 371 28 14 chr1 25624439 25624584 -171570848 + B1F1 SINE Alu 1 147 -2 1 780 219 267 23 0 chr1 25624772 25624858 -171570574 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 780 375 23 0 0 chr1 25624859 25624903 -171570529 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 780 1947 182 80 0 chr1 25625274 25625636 -171569796 + ORR1B1 LTR MaLR 1 391 -3 1 780 1234 278 61 33 chr1 25625977 25626372 -171569060 + Lx6 LINE L1 6969 7374 -86 1 780 441 0 0 0 chr1 25626409 25626458 -171568974 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 780 427 322 6 49 chr1 25630182 25630235 -171565197 - B3 SINE B2 0 216 165 1 780 213 39 0 0 chr1 25630235 25630261 -171565171 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 780 427 322 6 49 chr1 25630261 25630370 -171565062 - B3 SINE B2 -52 164 61 1 780 369 0 0 0 chr1 25630772 25630813 -171564619 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 780 1091 90 0 0 chr1 25630813 25630958 -171564474 - B1_Mus1 SINE Alu -2 146 2 1 780 353 309 48 24 chr1 25631107 25631233 -171564199 - ORR1E LTR MaLR -222 137 9 1 780 194 81 27 0 chr1 25631283 25631320 -171564112 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 780 221 343 71 52 chr1 25631498 25631710 -171563722 - B3 SINE B2 0 216 1 1 780 180 0 0 0 chr1 25631977 25631997 -171563435 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 780 221 0 35 0 chr1 25632742 25632771 -171562661 + (TATAA)n Simple_repeat Simple_repeat 5 34 0 1 780 198 0 0 0 chr1 25633302 25633324 -171562108 + (T)n Simple_repeat Simple_repeat 1 22 0 1 780 470 230 0 9 chr1 25634076 25634190 -171561242 - Lx2B LINE L1 -2 6998 6886 1 780 26 30 0 0 chr1 25634332 25634365 -171561067 + AT_rich Low_complexity Low_complexity 1 33 0 1 780 28 86 0 0 chr1 25634448 25634518 -171560914 + AT_rich Low_complexity Low_complexity 1 70 0 1 780 264 210 0 0 chr1 25635393 25635474 -171559958 + CT-rich Low_complexity Low_complexity 4 84 0 1 780 195 129 0 0 chr1 25635884 25635915 -171559517 + (A)n Simple_repeat Simple_repeat 1 31 0 1 780 189 107 0 0 chr1 25636338 25636366 -171559066 + (T)n Simple_repeat Simple_repeat 1 28 0 1 780 422 79 16 0 chr1 25636732 25636795 -171558637 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 780 28 29 0 0 chr1 25638923 25638958 -171556474 + AT_rich Low_complexity Low_complexity 1 35 0 1 780 2550 94 0 26 chr1 25639168 25639549 -171555883 - Lx3_Mus LINE L1 0 7009 6639 1 780 3650 128 36 5 chr1 25639549 25640222 -171555210 + Lx3_Mus LINE L1 5877 6623 -386 1 780 26 64 0 0 chr1 25640289 25640336 -171555096 + AT_rich Low_complexity Low_complexity 1 47 0 1 780 700 254 84 78 chr1 25640552 25640860 -171554572 + RLTR18 LTR ERVK 5 314 -302 1 780 857 262 119 53 chr1 25640905 25641207 -171554225 + RLTR18B LTR ERVK 191 512 0 1 780 360 340 99 27 chr1 25641207 25641427 -171554005 + Tigger5 DNA MER2_type 62 297 -2109 1 780 635 229 118 21 chr1 25641579 25641766 -171553666 - B3 SINE B2 -11 205 1 1 780 424 326 108 61 chr1 25642008 25642399 -171553033 + MLT2B3 LTR ERVL 15 419 -96 1 780 2185 178 25 45 chr1 25642399 25642869 -171552563 - RMER6B LTR ERVK 0 461 1 1 780 27 62 0 0 chr1 25643684 25643732 -171551700 + AT_rich Low_complexity Low_complexity 1 48 0 1 780 453 19 0 0 chr1 25644031 25644085 -171551347 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 780 234 0 0 0 chr1 25644192 25644218 -171551214 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 780 266 241 17 0 chr1 25644237 25644295 -171551137 - Lx8 LINE L1 -744 6729 6671 1 780 23 68 0 0 chr1 25644295 25644339 -171551093 + AT_rich Low_complexity Low_complexity 1 44 0 1 780 309 313 8 17 chr1 25644417 25644534 -171550898 + PB1D10 SINE Alu 2 117 0 1 780 427 325 133 72 chr1 25644880 25645405 -171550027 + Tigger11a DNA MER2_type 144 700 -35 1 780 270 73 0 0 chr1 25646692 25646733 -171548699 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 780 6037 50 4 0 chr1 25646791 25647532 -171547900 + L1Md_F2 LINE L1 5825 6568 -14 1 780 35411 35 0 0 chr1 25647678 25653105 -171542327 + L1Md_T LINE L1 66 5589 -297 2 780 8990 5 0 0 chr1 25653105 25654157 -171541275 + L1Md_T LINE L1 5590 6585 0 2 780 2412 96 68 8 chr1 25655300 25655680 -171539752 + Lx LINE L1 6252 6654 0 2 780 554 341 52 63 chr1 25656711 25657074 -171538358 - ORR1E LTR MaLR 0 359 1 2 780 667 315 128 10 chr1 25657995 25658300 -171537132 - MER2 DNA MER2_type 0 345 5 2 780 420 20 0 0 chr1 25658320 25658369 -171537063 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2 780 2709 92 26 3 chr1 25659452 25659842 -171535590 - L1_Mus2 LINE L1 0 6566 6168 2 780 959 129 55 0 chr1 25659868 25660031 -171535401 + L1Md_A LINE L1 424 595 -6129 2 780 18580 23 4 1 chr1 25660021 25662197 -171533235 + L1_Mm LINE L1 3402 5586 -297 2 780 8439 31 0 1 chr1 25662197 25663193 -171532239 + L1Md_T LINE L1 5587 6581 -1 2 780 18580 23 4 1 chr1 25663193 25663209 -171532223 + L1_Mm LINE L1 5587 5602 -281 2 780 448 237 118 46 chr1 25663743 25663937 -171531495 - L1MA7 LINE L1 -246 6045 5844 2 780 240 259 37 0 chr1 25663909 25663990 -171531442 + L1MA7 LINE L1 6086 6169 -122 2 780 215 211 0 0 chr1 25664405 25664443 -171530989 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 780 886 39 0 0 chr1 25667824 25667928 -171527504 - L1Md_F2 LINE L1 -303 6279 6176 2 780 2050 79 0 24 chr1 25667928 25668226 -171527206 + L1Md_F2 LINE L1 6290 6580 -2 2 780 495 0 0 0 chr1 25668226 25668281 -171527151 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 780 669 47 0 0 chr1 25668281 25668366 -171527066 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 2 780 327 299 120 33 chr1 25669553 25669736 -171525696 - B4A SINE B4 -60 232 29 2 780 314 257 120 26 chr1 25670168 25670360 -171525072 + Lx7 LINE L1 7487 7696 0 2 780 1594 88 49 0 chr1 25670623 25670849 -171524583 - L1_Mus1 LINE L1 0 6567 6331 2 780 1614 56 0 0 chr1 25670851 25671049 -171524383 + L1_Mus1 LINE L1 6123 6320 -247 2 780 227 154 39 0 chr1 25672384 25672436 -171522996 + (TTG)n Simple_repeat Simple_repeat 2 55 0 2 780 25 0 0 0 chr1 25672440 25672465 -171522967 + AT_rich Low_complexity Low_complexity 1 25 0 2 780 363 264 141 51 chr1 25672527 25672683 -171522749 + MLT1K LTR MaLR 382 551 -44 2 780 378 0 0 0 chr1 25673162 25673204 -171522228 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 780 45 62 0 0 chr1 25674055 25674135 -171521297 + AT_rich Low_complexity Low_complexity 1 80 0 2 780 23 54 0 0 chr1 25674237 25674274 -171521158 + AT_rich Low_complexity Low_complexity 1 37 0 2 780 439 333 35 0 chr1 25674570 25674714 -171520718 - B3 SINE B2 -1 215 67 2 780 376 329 42 7 chr1 25674766 25674910 -171520522 + ID_B1 SINE B4 70 218 -6 2 780 353 265 69 56 chr1 25675812 25675956 -171519476 - B2_Mm2 SINE B2 -35 160 15 2 780 23 0 0 0 chr1 25677051 25677074 -171518358 + AT_rich Low_complexity Low_complexity 1 23 0 2 780 333 68 0 0 chr1 25677124 25677168 -171518264 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 780 502 282 32 13 chr1 25678390 25678548 -171516884 + B4 SINE B4 108 268 -24 2 780 181 119 23 23 chr1 25681106 25681149 -171514283 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 780 411 21 0 0 chr1 25681692 25681740 -171513692 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 780 359 285 138 0 chr1 25681794 25681917 -171513515 - ID_B1 SINE B4 -6 218 79 2 780 3114 45 28 2 chr1 25681924 25682322 -171513110 + L1Md_F2 LINE L1 6163 6570 -12 2 780 31 44 0 0 chr1 25682330 25682375 -171513057 + AT_rich Low_complexity Low_complexity 1 45 0 2 780 195 157 0 0 chr1 25685540 25685591 -171509841 + A-rich Low_complexity Low_complexity 1 51 0 2 780 897 230 103 152 chr1 25685844 25686233 -171509199 - ORR1D1 LTR MaLR 0 374 5 2 780 429 251 6 22 chr1 25686810 25686989 -171508443 + GA-rich Low_complexity Low_complexity 2 177 0 2 780 489 339 98 26 chr1 25687960 25688154 -171507278 + ID_B1 SINE B4 2 209 -15 2 780 459 73 0 0 chr1 25688177 25688245 -171507187 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 780 287 160 13 0 chr1 25688265 25688340 -171507092 + GA-rich Low_complexity Low_complexity 1 76 0 2 780 25 0 0 0 chr1 25688405 25688430 -171507002 + AT_rich Low_complexity Low_complexity 1 25 0 2 780 24 0 0 0 chr1 25689200 25689224 -171506208 + AT_rich Low_complexity Low_complexity 1 24 0 2 780 21 36 0 0 chr1 25689383 25689411 -171506021 + AT_rich Low_complexity Low_complexity 1 28 0 2 780 399 43 0 41 chr1 25689526 25689599 -171505833 - L1_Mus3 LINE L1 0 6638 6569 2 97 1351 68 10 0 chr1 25689949 25690141 -171505291 - L1Md_F2 LINE L1 -14 6568 6375 2 781 4604 58 3 2 chr1 25690367 25690955 -171504477 - L1Md_F2 LINE L1 0 6582 5994 2 781 3208 80 24 2 chr1 25692670 25693124 -171502308 - L1_Mus4 LINE L1 0 6636 6173 2 781 21 0 0 0 chr1 25693733 25693754 -171501678 + AT_rich Low_complexity Low_complexity 1 21 0 2 781 1201 253 30 42 chr1 25694549 25695196 -171500236 + RLTR18B LTR ERVK 17 510 -2 2 781 372 362 68 72 chr1 25695225 25695517 -171499915 - B4 SINE B4 0 292 2 2 781 213 39 0 0 chr1 25695658 25695684 -171499748 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 781 291 114 0 0 chr1 25695684 25695727 -171499705 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 781 377 322 0 50 chr1 25696491 25696612 -171498820 - PB1D10 SINE Alu -1 116 2 2 781 1254 260 44 15 chr1 25696773 25697112 -171498320 + ORR1D2 LTR MaLR 5 353 -17 2 781 1822 192 78 24 chr1 25698894 25699320 -171496112 - Lx2B LINE L1 -10 6990 6542 2 781 1371 262 37 2 chr1 25699670 25700046 -171495386 + MTD LTR MaLR 1 387 -32 2 781 243 0 0 0 chr1 25700046 25700073 -171495359 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 781 1371 262 37 2 chr1 25700073 25700101 -171495331 + MTD LTR MaLR 388 418 -1 2 781 183 42 0 0 chr1 25700326 25700350 -171495082 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 781 1142 88 0 0 chr1 25700357 25700504 -171494928 - B1_Mm SINE Alu 0 147 1 2 781 414 115 0 0 chr1 25700657 25700718 -171494714 + B2_Mm2 SINE B2 79 139 -56 2 781 394 174 14 0 chr1 25701083 25701152 -171494280 - ID2 SINE ID -10 73 4 2 781 34 24 0 0 chr1 25703130 25703171 -171492261 + AT_rich Low_complexity Low_complexity 1 41 0 2 781 240 360 35 116 chr1 25703803 25703976 -171491456 - RSINE1 SINE B4 -6 159 1 2 781 2727 154 72 101 chr1 25704747 25705505 -171489927 + RLTR13D6 LTR ERVK 1 902 0 2 781 23 33 0 0 chr1 25706256 25706286 -171489146 + AT_rich Low_complexity Low_complexity 1 30 0 2 781 183 60 40 95 chr1 25706807 25706881 -171488551 + (TTAAA)n Simple_repeat Simple_repeat 2 71 0 2 781 4638 101 9 3 chr1 25707122 25707779 -171487653 - L1_Mus3 LINE L1 -2 6636 5976 2 781 27 29 0 0 chr1 25708294 25708328 -171487104 + AT_rich Low_complexity Low_complexity 1 34 0 2 781 278 256 0 46 chr1 25709306 25709437 -171485995 + (TTATA)n Simple_repeat Simple_repeat 3 127 0 2 781 48 43 0 0 chr1 25709466 25709535 -171485897 + AT_rich Low_complexity Low_complexity 1 69 0 2 781 285 37 36 36 chr1 25709606 25709662 -171485770 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 781 318 350 34 10 chr1 25709780 25709988 -171485444 + L2a LINE L2 2148 2360 -1059 2 781 216 86 0 0 chr1 25710014 25710049 -171485383 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 781 521 214 19 0 chr1 25710049 25710152 -171485280 - B1_Mur1 SINE Alu -5 144 40 2 781 317 164 0 14 chr1 25710299 25710373 -171485059 + CT-rich Low_complexity Low_complexity 2 74 0 2 781 315 295 9 56 chr1 25710464 25710571 -171484861 - PB1D10 SINE Alu -6 111 13 2 781 268 347 139 15 chr1 25710595 25710861 -171484571 + L2a LINE L2 2585 2883 -536 2 781 311 330 163 15 chr1 25710951 25711289 -171484143 + L2a LINE L2 3030 3417 -9 2 781 298 287 0 11 chr1 25711437 25711525 -171483907 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 781 427 289 6 91 chr1 25711526 25711701 -171483731 - RSINE1 SINE B4 0 165 6 2 781 252 0 0 0 chr1 25711863 25711891 -171483541 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 2 781 186 43 0 0 chr1 25711892 25711915 -171483517 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 2 781 772 252 87 32 chr1 25712761 25713072 -171482360 + Lx7 LINE L1 6978 7305 -391 2 781 256 306 219 22 chr1 25713370 25713507 -171481925 + RSINE1 SINE B4 2 165 0 2 781 189 0 0 0 chr1 25714469 25714490 -171480942 + (T)n Simple_repeat Simple_repeat 1 21 0 2 781 376 289 6 60 chr1 25714805 25714971 -171480461 + GA-rich Low_complexity Low_complexity 6 162 0 2 781 306 194 0 0 chr1 25715333 25715400 -171480032 + CT-rich Low_complexity Low_complexity 3 69 0 2 781 973 292 87 49 chr1 25715428 25715827 -171479605 + Lx8 LINE L1 6899 7327 -146 2 781 342 0 0 0 chr1 25715827 25715865 -171479567 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 781 231 36 0 0 chr1 25715865 25715892 -171479540 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 781 973 292 87 49 chr1 25715892 25716042 -171479390 + Lx8 LINE L1 7328 7468 -5 2 781 262 311 69 92 chr1 25716177 25716308 -171479124 + ORR1E LTR MaLR 56 183 -176 2 781 351 0 0 0 chr1 25717132 25717171 -171478261 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 781 29 47 0 0 chr1 25717203 25717246 -171478186 + AT_rich Low_complexity Low_complexity 1 43 0 2 781 213 239 0 0 chr1 25717364 25717410 -171478022 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 2 781 31179 39 1 0 chr1 25718900 25725140 -171470292 + L1Md_T LINE L1 1 5589 -297 2 781 8919 8 0 0 chr1 25725140 25726136 -171469296 + L1Md_T LINE L1 5590 6585 0 2 781 210 0 0 107 chr1 25727160 25727216 -171468216 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 781 482 114 13 0 chr1 25728980 25729059 -171466373 + (TCC)n Simple_repeat Simple_repeat 2 81 0 2 781 22 56 0 0 chr1 25729778 25729814 -171465618 + AT_rich Low_complexity Low_complexity 1 36 0 2 781 207 100 0 0 chr1 25731159 25731189 -171464243 + (A)n Simple_repeat Simple_repeat 1 30 0 2 781 757 218 61 91 chr1 25731685 25731882 -171463550 + B3A SINE B2 8 198 0 2 781 1499 171 34 77 chr1 25732865 25733268 -171462164 + ORR1A4 LTR MaLR 1 323 -51 2 781 222 118 0 0 chr1 25733382 25733416 -171462016 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 781 709 370 50 54 chr1 25734378 25734992 -171460440 + Lx8 LINE L1 6857 7468 -5 3 781 25 0 0 0 chr1 25735791 25735816 -171459616 + AT_rich Low_complexity Low_complexity 1 25 0 3 781 264 167 0 0 chr1 25736927 25736975 -171458457 + (TTA)n Simple_repeat Simple_repeat 2 49 0 3 781 223 244 0 0 chr1 25737258 25737303 -171458129 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 781 1484 217 98 0 chr1 25737386 25737723 -171457709 + ORR1C1 LTR MaLR 2 371 -7 3 781 1198 267 95 14 chr1 25737986 25738354 -171457078 - MTD LTR MaLR 0 419 22 3 781 799 268 188 40 chr1 25739677 25740023 -171455409 - MTD LTR MaLR -15 404 8 3 781 252 339 145 32 chr1 25740084 25740367 -171455065 + L2a LINE L2 3110 3424 -2 3 781 470 194 8 163 chr1 25740620 25740684 -171454748 - B1_Mus1 SINE Alu -33 115 51 3 781 2731 33 9 0 chr1 25740684 25741015 -171454417 + L1Md_F3 LINE L1 6251 6584 0 3 781 470 194 8 163 chr1 25741015 25741079 -171454353 - B1_Mus1 SINE Alu -98 50 7 3 781 24 0 0 0 chr1 25743523 25743547 -171451885 + AT_rich Low_complexity Low_complexity 1 24 0 3 781 2004 87 62 3 chr1 25743652 25743942 -171451490 + L1_Mus3 LINE L1 6326 6632 -6 3 781 403 130 13 13 chr1 25745537 25745615 -171449817 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 781 288 0 0 0 chr1 25745615 25745647 -171449785 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 781 265 273 0 0 chr1 25745679 25745734 -171449698 + ID4 SINE ID 1 55 -28 3 781 2024 181 49 8 chr1 25746099 25746394 -171449038 + MTC LTR MaLR 6 298 -123 3 781 225 0 0 0 chr1 25746394 25746419 -171449013 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 781 1121 44 7 0 chr1 25746420 25746557 -171448875 - B1_Mm SINE Alu -8 139 2 3 781 2024 181 49 8 chr1 25746557 25746649 -171448783 + MTC LTR MaLR 299 408 -13 3 781 198 0 0 0 chr1 25746997 25747019 -171448413 + (CAA)n Simple_repeat Simple_repeat 3 24 0 3 781 213 413 7 7 chr1 25747360 25747499 -171447933 - ID_B1 SINE B4 -2 222 84 3 781 756 309 72 33 chr1 25748389 25748751 -171446681 - MTE2b LTR MaLR -3 376 1 3 781 239 283 19 0 chr1 25750626 25750679 -171444753 - AluF_3 SINE Alu -121 190 137 3 781 624 27 0 0 chr1 25750973 25751047 -171444385 + (A)n Simple_repeat Simple_repeat 1 74 0 3 781 358 231 117 12 chr1 25751297 25751468 -171443964 + L1MD3 LINE L1 7807 7995 0 3 781 192 40 0 0 chr1 25753489 25753514 -171441918 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 781 241 319 241 29 chr1 25753670 25753844 -171441588 + B3 SINE B2 1 211 -5 3 781 212 31 62 0 chr1 25754068 25754100 -171441332 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 781 662 250 101 30 chr1 25757413 25757611 -171437821 - B3 SINE B2 -4 212 1 3 781 5945 239 60 26 chr1 25758577 25759744 -171435688 + Lx6 LINE L1 5867 7102 -358 3 781 501 115 0 0 chr1 25759744 25759822 -171435610 + (CATA)n Simple_repeat Simple_repeat 1 78 0 3 781 5945 239 60 26 chr1 25759822 25760190 -171435242 + Lx6 LINE L1 7103 7454 -6 3 781 23 33 0 0 chr1 25760289 25760319 -171435113 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 181 380 14 72 chr1 25760466 25760605 -171434827 + MIRc SINE MIR 3 133 -135 3 781 279 54 0 0 chr1 25761377 25761414 -171434018 + (T)n Simple_repeat Simple_repeat 1 37 0 3 781 207 125 0 0 chr1 25761559 25761599 -171433833 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 781 360 0 0 0 chr1 25762589 25762629 -171432803 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 781 706 161 11 0 chr1 25763077 25763251 -171432181 + CT-rich Low_complexity Low_complexity 1 176 0 3 781 209 143 0 35 chr1 25763857 25763915 -171431517 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 3 781 324 0 0 0 chr1 25763917 25763953 -171431479 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 781 25 51 0 0 chr1 25764286 25764325 -171431107 + AT_rich Low_complexity Low_complexity 1 39 0 3 781 477 248 62 33 chr1 25765303 25765545 -171429887 + L1M2 LINE L1 5107 5355 -788 3 781 894 334 46 17 chr1 25765713 25766320 -171429112 + L1M2 LINE L1 4428 5059 -1084 3 781 726 136 0 0 chr1 25766330 25766448 -171428984 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 3 781 555 285 104 15 chr1 25766465 25766848 -171428584 + L1M2 LINE L1 5091 5472 -408 3 781 22 35 0 0 chr1 25766858 25766887 -171428545 + AT_rich Low_complexity Low_complexity 1 29 0 3 781 1117 253 211 54 chr1 25766887 25767535 -171427897 + RLTR40 LTR ERVK 22 770 -47 3 781 1034 63 7 0 chr1 25767820 25767963 -171427469 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 781 459 35 0 0 chr1 25768941 25768998 -171426434 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 781 21 0 0 0 chr1 25769322 25769343 -171426089 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 243 0 0 0 chr1 25769882 25769909 -171425523 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 781 288 230 44 7 chr1 25770914 25770943 -171424489 + ORR1B1-int LTR MaLR 614 647 -862 3 781 822 88 0 0 chr1 25770943 25771056 -171424376 + B1_Mus1 SINE Alu 2 114 -34 3 781 228 163 0 0 chr1 25771149 25771192 -171424240 + (ATG)n Simple_repeat Simple_repeat 1 43 0 3 781 264 118 28 47 chr1 25772225 25772332 -171423100 + (TTTG)n Simple_repeat Simple_repeat 2 106 0 3 781 949 74 0 43 chr1 25772352 25772493 -171422939 + B1_Mus1 SINE Alu 1 135 -13 3 781 270 0 65 22 chr1 25772493 25772539 -171422893 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 781 472 310 74 49 chr1 25774548 25774833 -171420599 - B4A SINE B4 0 292 1 3 781 399 334 148 22 chr1 25775406 25775724 -171419708 + MTEa LTR MaLR 22 379 0 3 781 23 0 0 0 chr1 25776971 25776994 -171418438 + AT_rich Low_complexity Low_complexity 1 23 0 3 781 279 0 0 0 chr1 25777681 25777712 -171417720 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 781 1938 219 47 12 chr1 25777893 25778073 -171417359 + MTC LTR MaLR 1 185 -236 3 781 1879 60 0 4 chr1 25778073 25778322 -171417110 + L1Md_F3 LINE L1 6337 6584 0 3 781 1938 219 47 12 chr1 25778322 25778548 -171416884 + MTC LTR MaLR 186 420 -1 3 781 394 83 28 0 chr1 25779016 25779088 -171416344 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 781 393 22 0 0 chr1 25779088 25779133 -171416299 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 781 333 278 33 0 chr1 25779679 25779769 -171415663 - B1F2 SINE Alu 0 149 57 3 781 31 99 0 0 chr1 25780217 25780318 -171415114 + AT_rich Low_complexity Low_complexity 1 101 0 3 781 2448 180 106 51 chr1 25780585 25781236 -171414196 + RMER6C LTR ERVK 4 690 0 3 781 284 293 68 8 chr1 25781517 25781634 -171413798 + Lx9 LINE L1 7064 7187 -457 3 781 450 0 0 0 chr1 25781867 25781917 -171413515 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 781 288 0 0 0 chr1 25781917 25781948 -171413484 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 781 2164 74 20 3 chr1 25782078 25782375 -171413057 + L1_Mus1 LINE L1 6266 6567 0 3 781 1101 330 88 49 chr1 25782511 25782884 -171412548 + Lx8 LINE L1 6363 6741 -732 3 781 471 78 0 0 chr1 25782884 25782948 -171412484 + (TTA)n Simple_repeat Simple_repeat 1 64 0 3 781 1101 330 88 49 chr1 25782948 25783417 -171412015 + Lx8 LINE L1 6742 7238 -235 3 781 417 39 0 0 chr1 25783512 25783563 -171411869 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 781 508 126 0 0 chr1 25783848 25783935 -171411497 + L1_Mus3 LINE L1 6539 6625 -13 3 781 351 44 0 0 chr1 25784220 25784265 -171411167 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 781 510 139 0 0 chr1 25785311 25785397 -171410035 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 781 541 275 72 0 chr1 25785440 25785578 -171409854 + B3 SINE B2 64 211 -5 3 781 353 333 36 29 chr1 25786551 25786690 -171408742 + ID_B1 SINE B4 78 217 -7 3 781 249 157 0 0 chr1 25787339 25787369 -171408063 + A-rich Low_complexity Low_complexity 1 30 0 3 781 914 134 42 0 chr1 25787369 25787511 -171407921 + B1_Mus1 SINE Alu 1 148 0 3 781 249 157 0 0 chr1 25787511 25787531 -171407901 + A-rich Low_complexity Low_complexity 31 50 0 3 781 1028 301 52 37 chr1 25788270 25788753 -171406679 + Lx9 LINE L1 6932 7421 -223 3 781 289 110 43 11 chr1 25790287 25790379 -171405053 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 3 781 1137 88 0 0 chr1 25790390 25790537 -171404895 - B1_Mus1 SINE Alu 0 148 2 3 781 283 308 72 40 chr1 25791750 25791875 -171403557 + MER5A DNA MER1_type 4 132 -57 3 781 25 31 0 0 chr1 25791987 25792019 -171403413 + AT_rich Low_complexity Low_complexity 1 32 0 3 781 225 108 0 0 chr1 25792022 25792059 -171403373 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 3 781 510 70 0 0 chr1 25792066 25792137 -171403295 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 781 327 25 0 0 chr1 25792137 25792176 -171403256 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 781 4082 161 66 34 chr1 25792378 25793237 -171402195 - Lx3C LINE L1 -1050 4827 3941 3 781 6008 173 32 8 chr1 25793246 25794926 -171400506 + Lx3C LINE L1 4822 6974 -2 3 781 7494 104 21 3 chr1 25794942 25796357 -171399075 + L1VL1 LINE L1 2 1446 -2252 3 781 4169 140 16 1 chr1 25796352 25797053 -171398379 + L1_Mm LINE L1 2152 2862 -3021 3 781 255 304 59 6 chr1 25797097 25797269 -171398163 - L1Md_F2 LINE L1 0 5847 5682 3 781 205 271 55 41 chr1 25797951 25798024 -171397408 + L2c LINE L2 3278 3351 -36 3 781 577 229 105 83 chr1 25798908 25799174 -171396258 + Lx8 LINE L1 7199 7470 -3 3 781 21 0 0 0 chr1 25799176 25799197 -171396235 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 198 143 0 0 chr1 25799250 25799285 -171396147 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 781 233 336 32 40 chr1 25799367 25799491 -171395941 + MIR SINE MIR 28 150 -112 3 781 21 0 0 0 chr1 25799639 25799660 -171395772 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 24 0 0 0 chr1 25800006 25800030 -171395402 + AT_rich Low_complexity Low_complexity 1 24 0 3 781 25 31 0 0 chr1 25800154 25800186 -171395246 + AT_rich Low_complexity Low_complexity 1 32 0 3 781 2948 51 3 0 chr1 25800245 25800619 -171394813 - L1Md_F2 LINE L1 -2 6580 6206 4 781 210 300 44 118 chr1 25801855 25801959 -171393473 + MIRm SINE MIR 12 103 -173 4 781 691 55 0 9 chr1 25801959 25802068 -171393364 - L1Md_F3 LINE L1 -1 6583 6476 4 781 210 300 44 118 chr1 25802068 25802099 -171393333 + MIRm SINE MIR 104 137 -139 4 781 244 327 109 0 chr1 25804350 25804460 -171390972 - MamRep605 Unknown Unknown -332 544 423 4 781 2993 33 3 0 chr1 25804671 25805033 -171390399 - L1Md_F2 LINE L1 0 6582 6220 4 781 422 114 14 0 chr1 25805278 25805348 -171390084 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 781 418 279 47 13 chr1 25806966 25807115 -171388317 - L1MA5A LINE L1 -400 5897 5744 4 781 471 282 108 34 chr1 25807235 25807411 -171388021 - MER3 DNA MER1_type 0 209 21 4 781 785 286 15 5 chr1 25807602 25807799 -171387633 - MER58A DNA MER1_type -23 201 3 4 781 219 380 60 20 chr1 25807859 25808109 -171387323 - L2c LINE L2 -151 3236 2977 4 781 2281 92 3 58 chr1 25809061 25809407 -171386025 - ORR1A2 LTR MaLR 0 327 1 4 781 318 303 155 11 chr1 25810418 25810605 -171384827 + Lx7 LINE L1 7019 7232 -464 4 781 348 64 0 0 chr1 25810639 25810686 -171384746 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 781 243 282 9 26 chr1 25810713 25810826 -171384606 + T-rich Low_complexity Low_complexity 3 113 0 4 781 420 20 0 0 chr1 25810963 25811012 -171384420 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 781 518 339 57 10 chr1 25813043 25813237 -171382195 + B4 SINE B4 1 203 -89 4 781 316 289 71 43 chr1 25813241 25813382 -171382050 + HAL1-3A_ME LINE L1 2284 2428 -430 4 781 189 0 0 0 chr1 25813675 25813696 -171381736 + (A)n Simple_repeat Simple_repeat 1 21 0 4 781 456 67 0 0 chr1 25813990 25814050 -171381382 + (CAA)n Simple_repeat Simple_repeat 1 60 0 4 781 683 326 6 0 chr1 25814878 25815059 -171380373 - B4A SINE B4 -106 186 5 4 781 7875 65 2 1 chr1 25815101 25816358 -171379074 + L1_Mus1 LINE L1 5309 6566 -1 4 781 189 0 0 0 chr1 25816582 25816603 -171378829 + (A)n Simple_repeat Simple_repeat 1 21 0 4 781 26 0 0 0 chr1 25816953 25816979 -171378453 + AT_rich Low_complexity Low_complexity 1 26 0 4 781 1644 137 79 20 chr1 25817370 25817682 -171377750 + RLTR10E LTR ERVK 1 385 -5 4 781 255 138 57 11 chr1 25819234 25819322 -171376110 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 782 787 281 120 94 chr1 25821690 25821837 -171373595 + RLTR18B LTR ERVK 9 160 -352 4 782 573 28 0 0 chr1 25821837 25821908 -171373524 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 782 787 281 120 94 chr1 25821908 25821958 -171373474 + RLTR18B LTR ERVK 161 217 -295 4 782 1108 81 87 6 chr1 25821958 25822131 -171373301 - L1_Mus3 LINE L1 -7 6631 6445 4 782 787 284 132 89 chr1 25822131 25822415 -171373017 + RLTR18B LTR ERVK 218 616 0 4 782 184 100 24 24 chr1 25823720 25823761 -171371671 + (TATG)n Simple_repeat Simple_repeat 4 44 0 4 782 242 165 82 0 chr1 25824182 25824267 -171371165 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 782 220 344 90 38 chr1 25824409 25824542 -171370890 + B1_Mur3 SINE Alu 10 149 0 4 782 267 203 0 0 chr1 25824728 25824787 -171370645 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 4 782 234 228 98 10 chr1 25825031 25825133 -171370299 - L1ME2z LINE L1 -30 6414 6304 4 782 626 0 14 0 chr1 25825450 25825524 -171369908 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 4 782 1353 171 40 18 chr1 25826356 25826630 -171368802 + L1Md_F3 LINE L1 6305 6584 0 4 782 2481 142 88 2 chr1 25827232 25827677 -171367755 + Lx3C LINE L1 6491 6973 -3 4 782 200 159 45 0 chr1 25827861 25827905 -171367527 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 782 207 69 0 0 chr1 25827905 25827934 -171367498 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 4 782 5568 186 23 9 chr1 25829437 25830500 -171364932 - Lx2 LINE L1 0 6997 5921 4 782 588 84 0 0 chr1 25831161 25831244 -171364188 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 782 32 0 0 0 chr1 25832005 25832037 -171363395 + AT_rich Low_complexity Low_complexity 1 32 0 4 782 414 215 11 11 chr1 25832790 25832884 -171362548 - CR1_Mam LINE CR1 -1259 945 852 4 782 1016 320 56 28 chr1 25836631 25837023 -171358409 + Lx8 LINE L1 6929 7331 -142 4 782 238 351 47 84 chr1 25837411 25837601 -171357831 + Arthur1 DNA Tip100 1 183 -3764 4 782 878 244 60 143 chr1 25837608 25837972 -171357460 - MTD LTR MaLR 0 419 86 4 782 1629 173 26 40 chr1 25838237 25838491 -171356941 + RMER1B Other Other 709 956 -110 4 782 263 93 0 23 chr1 25838491 25838535 -171356897 + (TTA)n Simple_repeat Simple_repeat 3 45 0 4 782 1629 173 26 40 chr1 25838535 25838629 -171356803 + RMER1B Other Other 957 1052 -14 4 782 351 0 0 0 chr1 25838629 25838668 -171356764 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 782 288 0 0 0 chr1 25838744 25838776 -171356656 + (A)n Simple_repeat Simple_repeat 1 32 0 4 782 271 222 32 0 chr1 25838968 25839031 -171356401 + Arthur1 DNA Tip100 3581 3645 -302 4 782 333 0 0 0 chr1 25840351 25840388 -171355044 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 4 782 235 333 68 31 chr1 25840750 25840911 -171354521 - HAL1 LINE L1 -746 1761 1595 4 782 22 0 0 0 chr1 25842431 25842453 -171352979 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 1578 92 58 12 chr1 25843667 25843908 -171351524 - L1Md_F2 LINE L1 -8 6574 6323 4 782 23 68 0 0 chr1 25844476 25844520 -171350912 + AT_rich Low_complexity Low_complexity 1 44 0 4 782 516 164 133 33 chr1 25845494 25845614 -171349818 + B1_Mur3 SINE Alu 5 136 -13 4 782 311 93 0 0 chr1 25845751 25845794 -171349638 + ORR1D1 LTR MaLR 1 43 -331 4 782 1198 140 10 0 chr1 25846115 25846315 -171349117 - L1_Mur2 LINE L1 -1153 4724 4523 4 782 688 247 23 0 chr1 25846314 25846488 -171348944 + Lx5 LINE L1 6799 6976 -74 4 782 503 274 201 26 chr1 25847444 25847717 -171347715 - MLT1A0 LTR MaLR -29 336 16 4 782 249 396 73 7 chr1 25848375 25848525 -171346907 + MLT1J2 LTR MaLR 245 404 -44 4 782 209 111 28 0 chr1 25849161 25849197 -171346235 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 782 536 286 21 6 chr1 25849694 25849872 -171345560 + B3 SINE B2 32 211 -5 4 782 237 271 23 34 chr1 25851137 25851225 -171344207 - PB1D7 SINE Alu -7 113 27 4 782 297 211 39 8 chr1 25851318 25851447 -171343985 + GA-rich Low_complexity Low_complexity 2 134 0 4 782 21 36 0 0 chr1 25851824 25851852 -171343580 + AT_rich Low_complexity Low_complexity 1 28 0 4 782 567 304 89 93 chr1 25852385 25852771 -171342661 - L1MA4 LINE L1 -186 5970 5617 4 782 1593 228 148 40 chr1 25852771 25853251 -171342181 - MT2A LTR ERVL 0 533 2 4 782 567 298 90 92 chr1 25853251 25853527 -171341905 - L1MA4 LINE L1 -684 5616 5303 4 782 31 26 0 0 chr1 25854220 25854258 -171341174 + AT_rich Low_complexity Low_complexity 1 38 0 4 782 1311 255 31 72 chr1 25854784 25855173 -171340259 + MTEa LTR MaLR 1 373 -6 4 782 182 91 30 0 chr1 25855342 25855375 -171340057 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 782 526 307 137 28 chr1 25855762 25856084 -171339348 - MLT2D LTR ERVL -50 364 8 4 782 29 28 0 0 chr1 25857258 25857294 -171338138 + AT_rich Low_complexity Low_complexity 1 36 0 4 782 424 235 184 32 chr1 25857316 25857474 -171337958 - B3A SINE B2 -16 182 1 4 782 30 59 0 0 chr1 25858622 25858673 -171336759 + AT_rich Low_complexity Low_complexity 1 51 0 4 782 1493 147 35 25 chr1 25858938 25859224 -171336208 - Lx LINE L1 0 6654 6366 4 782 3933 89 54 5 chr1 25859639 25860215 -171335217 - L1_Mus4 LINE L1 0 6636 6033 4 782 333 0 0 0 chr1 25860907 25860944 -171334488 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 4 782 36 40 0 0 chr1 25861609 25861659 -171333773 + AT_rich Low_complexity Low_complexity 1 50 0 4 782 26 50 0 0 chr1 25862798 25862838 -171332594 + AT_rich Low_complexity Low_complexity 1 40 0 4 782 722 89 0 9 chr1 25864441 25864554 -171330878 + L1_Mus1 LINE L1 6456 6567 0 4 782 183 80 0 0 chr1 25864841 25864866 -171330566 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 782 502 113 0 93 chr1 25865031 25865138 -171330294 + Lx LINE L1 6552 6648 -6 4 782 471 154 0 0 chr1 25865533 25865615 -171329817 + CT-rich Low_complexity Low_complexity 10 91 0 4 782 1227 97 0 0 chr1 25865615 25865791 -171329641 + (TTC)n Simple_repeat Simple_repeat 2 177 0 4 782 2343 131 33 3 chr1 25865799 25866188 -171329244 - Lx2 LINE L1 -8 6989 6589 4 782 309 177 0 0 chr1 25866258 25866337 -171329095 + T-rich Low_complexity Low_complexity 1 79 0 4 782 633 167 111 0 chr1 25866723 25866885 -171328547 + MYSERV16_I-int LTR ERVK 2112 2291 -35 4 782 2229 164 56 16 chr1 25866918 25867345 -171328087 + RLTR11A LTR ERVK 1 444 -84 4 782 680 282 64 39 chr1 25869230 25869591 -171325841 + L1MA4A LINE L1 5561 5930 -373 4 782 589 348 43 43 chr1 25870671 25870933 -171324499 + B4A SINE B4 1 266 -26 4 782 297 75 0 0 chr1 25870933 25870973 -171324459 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 782 589 348 43 43 chr1 25870973 25870992 -171324440 + B4A SINE B4 267 282 -10 4 782 273 57 0 0 chr1 25873208 25873243 -171322189 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 4 782 1004 270 80 77 chr1 25874099 25874378 -171321054 - MTD LTR MaLR -46 373 116 4 782 363 23 0 0 chr1 25874378 25874422 -171321010 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 782 1004 286 80 74 chr1 25874422 25874509 -171320923 - MTD LTR MaLR -304 115 21 4 782 327 65 0 0 chr1 25876021 25876067 -171319365 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 782 579 53 0 0 chr1 25876981 25877056 -171318376 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 782 407 303 164 43 chr1 25877093 25877324 -171318108 - B4 SINE B4 -31 261 3 4 782 237 65 0 0 chr1 25877990 25878021 -171317411 + (CAT)n Simple_repeat Simple_repeat 3 33 0 4 782 1052 202 5 0 chr1 25878036 25878229 -171317203 - URR1B DNA MER1_type 0 225 32 4 782 189 0 0 0 chr1 25878947 25878968 -171316464 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 782 434 204 0 9 chr1 25879432 25879546 -171315886 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 782 214 214 12 12 chr1 25879578 25879663 -171315769 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 782 285 51 0 0 chr1 25879739 25879778 -171315654 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 782 21 36 0 0 chr1 25880487 25880515 -171314917 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 189 0 0 0 chr1 25884941 25884962 -171310470 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 782 222 37 0 0 chr1 25885268 25885295 -171310137 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 782 297 0 0 0 chr1 25885347 25885380 -171310052 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 782 189 0 0 0 chr1 25885863 25885884 -171309548 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 782 21 36 0 0 chr1 25886994 25887022 -171308410 + GC_rich Low_complexity Low_complexity 1 28 0 5 782 533 115 0 10 chr1 25887167 25887264 -171308168 + (CGGG)n Simple_repeat Simple_repeat 3 98 0 5 782 216 0 0 0 chr1 25887646 25887670 -171307762 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 782 769 237 45 20 chr1 25890178 25890376 -171305056 - B3 SINE B2 0 216 14 5 782 203 167 0 0 chr1 25891282 25891318 -171304114 + (GTTTG)n Simple_repeat Simple_repeat 4 39 0 5 782 310 298 114 8 chr1 25891599 25891731 -171303701 - RMER15 LTR ERVL -44 531 386 5 782 390 21 0 0 chr1 25892002 25892049 -171303383 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 782 531 262 23 23 chr1 25892239 25892368 -171303064 + RSINE1 SINE B4 9 137 -28 5 782 348 119 0 0 chr1 25892382 25892441 -171302991 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 782 598 302 30 34 chr1 25892625 25892892 -171302540 - L1MA5A LINE L1 -399 5898 5633 5 782 2310 262 17 43 chr1 25893122 25893636 -171301796 + Lx7 LINE L1 6804 7310 -386 5 782 2081 157 63 16 chr1 25893636 25894019 -171301413 + MTB_Mm LTR MaLR 4 404 -3 5 782 2310 262 17 43 chr1 25894019 25894137 -171301295 + Lx7 LINE L1 7311 7420 -276 5 782 264 100 0 0 chr1 25894150 25894190 -171301242 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 782 270 297 86 0 chr1 25894207 25894335 -171301097 + Lx7 LINE L1 7539 7677 -19 5 782 7826 106 53 35 chr1 25894381 25896018 -171299414 + Lx3B LINE L1 5296 6968 -5 5 782 242 56 28 0 chr1 25896026 25896062 -171299370 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 782 387 270 41 85 chr1 25896083 25896432 -171299000 + L1_Mur3 LINE L1 3676 4118 -1762 5 782 278 352 0 0 chr1 25896826 25896917 -171298515 + MLT1F2 LTR MaLR 83 173 -387 5 782 519 330 62 10 chr1 25897059 25897267 -171298165 + MLT1F2 LTR MaLR 339 557 -3 5 782 207 0 0 0 chr1 25897653 25897676 -171297756 + (T)n Simple_repeat Simple_repeat 1 23 0 5 782 1421 39 78 0 chr1 25897701 25897719 -171297713 - B2_Mm1t SINE B2 0 193 176 5 782 207 0 0 0 chr1 25897719 25897742 -171297690 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 782 1421 39 78 0 chr1 25897742 25897902 -171297530 - B2_Mm1t SINE B2 -18 175 2 5 782 25 0 0 0 chr1 25898001 25898026 -171297406 + AT_rich Low_complexity Low_complexity 1 25 0 5 782 541 286 0 16 chr1 25898061 25898189 -171297243 - RSINE1 SINE B4 -29 136 11 5 782 841 256 164 40 chr1 25898676 25899005 -171296427 - ORR1D2 LTR MaLR 0 370 1 5 782 497 238 15 31 chr1 25899005 25899135 -171296297 - ORR1D2-int LTR MaLR 0 1370 1243 5 782 792 221 78 41 chr1 25899136 25899381 -171296051 + Lx6 LINE L1 7207 7460 0 5 782 757 168 6 6 chr1 25899381 25899537 -171295895 + GA-rich Low_complexity Low_complexity 1 156 0 5 782 312 27 0 0 chr1 25899537 25899574 -171295858 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 5 782 1648 251 64 20 chr1 25899609 25900060 -171295372 - ORR1D2-int LTR MaLR -123 1247 777 5 782 1260 130 0 20 chr1 25900403 25900607 -171294825 + MTC LTR MaLR 1 200 -221 5 782 531 138 0 0 chr1 25900693 25900780 -171294652 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 782 1088 128 0 6 chr1 25900780 25900960 -171294472 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 5 782 672 191 282 6 chr1 25900961 25901124 -171294308 + MTC LTR MaLR 206 413 -8 5 782 393 22 0 0 chr1 25901284 25901330 -171294102 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 5 782 4203 128 20 1 chr1 25902289 25902993 -171292439 - L1_Mur1 LINE L1 -2016 3870 3154 5 782 5723 215 60 10 chr1 25902987 25904292 -171291140 + Lx3A LINE L1 5605 6974 -7 5 782 23 68 0 0 chr1 25904292 25904336 -171291096 + AT_rich Low_complexity Low_complexity 1 44 0 5 782 24 32 0 0 chr1 25905174 25905205 -171290227 + AT_rich Low_complexity Low_complexity 1 31 0 5 782 470 312 121 17 chr1 25905486 25905659 -171289773 + ID_B1 SINE B4 34 224 0 5 782 222 254 26 118 chr1 25905656 25905732 -171289700 + B4A SINE B4 11 79 -213 5 782 1159 295 130 11 chr1 25905787 25906240 -171289192 - Lx8 LINE L1 -84 7389 6883 5 782 21 36 0 0 chr1 25906320 25906348 -171289084 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 254 268 0 67 chr1 25906817 25906921 -171288511 - RMER1C Other Other -9 1333 1237 5 782 471 261 130 19 chr1 25906835 25907042 -171288390 - Lx8 LINE L1 -5 7468 7239 5 782 735 102 338 0 chr1 25907047 25907180 -171288252 - ORR1B1 LTR MaLR -5 389 212 5 782 1456 156 57 8 chr1 25907212 25907477 -171287955 - Lx2 LINE L1 -4 6993 6716 5 782 1104 178 16 113 chr1 25907477 25907724 -171287708 - ORR1B1 LTR MaLR -171 223 1 5 782 872 285 26 18 chr1 25907726 25907998 -171287434 - Lx8 LINE L1 -231 7242 6969 5 782 2245 161 46 12 chr1 25908230 25908640 -171286792 + Lx3B LINE L1 6547 6970 -3 5 782 207 0 0 0 chr1 25909042 25909065 -171286367 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 782 1197 42 0 0 chr1 25909065 25909209 -171286223 - B1_Mm SINE Alu -3 144 1 5 782 367 291 19 124 chr1 25909312 25909473 -171285959 - B4A SINE B4 -135 157 14 5 782 21 0 0 0 chr1 25910019 25910040 -171285392 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 186 333 26 0 chr1 25910171 25910249 -171285183 + MIRb SINE MIR 104 183 -85 5 782 28 0 0 0 chr1 25910551 25910579 -171284853 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 447 19 0 0 chr1 25911043 25911095 -171284337 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 782 372 43 0 0 chr1 25911095 25911141 -171284291 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 5 782 225 0 0 0 chr1 25911467 25911492 -171283940 + (T)n Simple_repeat Simple_repeat 1 25 0 5 782 1560 80 31 4 chr1 25912193 25912419 -171283013 - L1Md_F2 LINE L1 -3 6579 6348 5 782 498 363 33 5 chr1 25912538 25912751 -171282681 + MER58A DNA MER1_type 3 221 -3 5 782 373 377 29 0 chr1 25912800 25912938 -171282494 + B3 SINE B2 47 188 -28 5 782 246 128 0 0 chr1 25913170 25913209 -171282223 + (CATA)n Simple_repeat Simple_repeat 2 40 0 5 782 261 83 0 0 chr1 25913211 25913247 -171282185 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 782 246 300 12 59 chr1 25914192 25914277 -171281155 - L2a LINE L2 -25 3401 3321 5 782 427 371 39 39 chr1 25914550 25914808 -171280624 + MER70A LTR ERVL 205 462 -10 5 782 7960 52 7 2 chr1 25914904 25916211 -171279221 - L1Md_F2 LINE L1 -1 6581 5269 5 782 8017 72 8 19 chr1 25916207 25917315 -171278117 + L1Md_F2 LINE L1 4177 5272 -611 5 782 1416 134 38 42 chr1 25917345 25917610 -171277822 - Lx3C LINE L1 -2 6974 6711 5 782 1661 103 12 32 chr1 25917611 25917861 -171277571 + Lx3C LINE L1 6470 6714 -262 5 782 209 108 0 26 chr1 25917882 25917920 -171277512 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 5 782 971 112 0 27 chr1 25918150 25918297 -171277135 + B1_Mus1 SINE Alu 4 146 -2 5 782 1381 194 219 0 chr1 25918540 25918860 -171276572 + ORR1B1 LTR MaLR 5 394 0 5 782 358 296 5 9 chr1 25919077 25919193 -171276239 + MLT1E LTR MaLR 348 461 -193 5 782 354 238 25 0 chr1 25919229 25919309 -171276123 + Lx9 LINE L1 6328 6409 -1235 5 782 185 59 0 56 chr1 25919309 25919345 -171276087 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 782 4057 241 106 5 chr1 25919359 25920481 -171274951 + Lx9 LINE L1 6401 7636 -8 5 782 245 250 20 40 chr1 25921139 25921289 -171274143 + (TTTG)n Simple_repeat Simple_repeat 2 148 0 5 782 31 26 0 0 chr1 25921370 25921408 -171274024 + AT_rich Low_complexity Low_complexity 1 38 0 5 782 866 71 0 0 chr1 25921728 25921840 -171273592 - L1_Mus4 LINE L1 -650 5986 5875 5 782 4382 112 5 2 chr1 25921840 25922484 -171272948 + L1_Mus4 LINE L1 5976 6621 -15 5 782 3891 152 28 26 chr1 25922498 25923346 -171272086 + L1VL4 LINE L1 207 1054 -2505 5 782 2949 79 15 2 chr1 25923346 25923750 -171271682 + L1_Mus2 LINE L1 6158 6566 0 5 782 830 83 8 0 chr1 25923864 25923984 -171271448 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 5 782 485 168 91 27 chr1 25924553 25924566 -171270866 - B2_Mm1t SINE B2 -9 184 174 5 782 429 36 0 0 chr1 25924566 25924621 -171270811 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 782 485 168 91 27 chr1 25924621 25924717 -171270715 - B2_Mm1t SINE B2 -20 173 68 5 782 23538 154 18 11 chr1 25924733 25929905 -171265527 + L1_Mus4 LINE L1 1408 6618 -18 5 782 257 255 83 19 chr1 25930043 25930151 -171265281 - L1M3 LINE L1 -2119 4021 3907 5 782 736 294 35 0 chr1 25930261 25930462 -171264970 - B3 SINE B2 -5 211 4 5 782 441 0 0 0 chr1 25930577 25930626 -171264806 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 782 690 35 0 0 chr1 25930645 25930730 -171264702 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 5 782 324 0 0 0 chr1 25930730 25930766 -171264666 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 782 1839 112 5 13 chr1 25930766 25931069 -171264363 - L1Md_F2 LINE L1 -1079 5979 5711 5 782 953 278 23 18 chr1 25931183 25931610 -171263822 + Lx7 LINE L1 5591 6018 -1626 5 782 182 174 22 0 chr1 25932609 25932655 -171262777 + CT-rich Low_complexity Low_complexity 2 48 0 5 782 396 0 0 0 chr1 25932679 25932723 -171262709 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 782 199 222 204 0 chr1 25934028 25934082 -171261350 + MIRc SINE MIR 9 73 -195 5 782 407 316 91 25 chr1 25934620 25934818 -171260614 + LTR16A1 LTR ERVL 244 454 -2 5 782 796 248 9 9 chr1 25935030 25935242 -171260190 - B3 SINE B2 -1 215 4 5 782 1665 176 88 33 chr1 25935819 25936183 -171259249 + ORR1C2 LTR MaLR 1 384 0 5 782 239 79 0 26 chr1 25936563 25936602 -171258830 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 782 1099 262 120 8 chr1 25936602 25936760 -171258672 + L1MC LINE L1 4292 4471 -1675 5 782 261 0 0 0 chr1 25936760 25936789 -171258643 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 782 1099 262 120 8 chr1 25936789 25937131 -171258301 + L1MC LINE L1 4472 4848 -1298 5 782 224 241 0 0 chr1 25937507 25937561 -171257871 + A-rich Low_complexity Low_complexity 1 54 0 5 782 3274 41 5 0 chr1 25938020 25938414 -171257018 - MTA_Mm LTR MaLR 0 396 1 6 782 3691 70 0 0 chr1 25939049 25939524 -171255908 + L1Md_F3 LINE L1 5112 5586 -297 6 782 8064 31 11 5 chr1 25939524 25940503 -171254929 + L1Md_F3 LINE L1 5587 6571 -13 6 782 270 361 35 17 chr1 25940888 25941060 -171254372 - RMER5 LTR ERV1 -330 204 30 6 782 409 289 48 10 chr1 25941756 25941995 -171253437 + L1_Mur1 LINE L1 1546 1799 -2115 6 782 340 227 117 55 chr1 25942000 25942163 -171253269 + B2_Mm2 SINE B2 6 178 -17 6 782 23 54 0 0 chr1 25943512 25943549 -171251883 + AT_rich Low_complexity Low_complexity 1 37 0 6 782 22 0 0 0 chr1 25944122 25944144 -171251288 + AT_rich Low_complexity Low_complexity 1 22 0 6 782 1791 238 52 65 chr1 25944184 25944720 -171250712 - Lx5 LINE L1 -1 7049 6521 6 782 2531 122 15 19 chr1 25944720 25945131 -171250301 - RLTR9E LTR ERVK 0 409 1 6 782 3005 209 131 7 chr1 25945132 25945893 -171249539 - Lx4B LINE L1 -509 6549 5694 6 782 6278 150 20 3 chr1 25945890 25946946 -171248486 + Lx4B LINE L1 4607 5680 -197 6 782 237 354 118 66 chr1 25947014 25947150 -171248282 - RSINE1 SINE B4 -4 161 19 6 782 288 283 103 3 chr1 25947161 25947262 -171248170 - ID4_ SINE ID -42 110 3 6 782 1704 142 11 7 chr1 25947435 25947719 -171247713 - Lx2 LINE L1 -6 6991 6707 6 782 393 22 0 0 chr1 25951293 25951339 -171244093 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 782 1319 197 63 11 chr1 25951949 25952236 -171243196 - Lx2A1 LINE L1 -1 7007 6706 6 97 2321 112 28 0 chr1 25952237 25952633 -171242799 + Lx LINE L1 5524 5938 -716 6 783 23 78 0 0 chr1 25953187 25953238 -171242194 + AT_rich Low_complexity Low_complexity 1 51 0 6 783 16898 188 99 49 chr1 25953926 25956089 -171239343 - Lx4B LINE L1 -17 7041 4622 6 783 207 0 0 0 chr1 25956089 25956112 -171239320 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 783 16898 183 60 77 chr1 25956112 25958648 -171236784 - Lx4B LINE L1 -1256 4621 2184 6 783 618 38 0 0 chr1 25958648 25958727 -171236705 - B2_Mm2 SINE B2 -114 81 3 6 783 16898 183 60 77 chr1 25958727 25958867 -171236565 - Lx4B LINE L1 -1256 2183 2048 6 783 402 57 0 0 chr1 25958867 25958920 -171236512 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 783 16898 183 60 77 chr1 25958920 25959498 -171235934 - Lx4B LINE L1 -3830 2047 1449 6 783 21 71 0 0 chr1 25959543 25959585 -171235847 + AT_rich Low_complexity Low_complexity 1 42 0 6 783 2128 81 0 23 chr1 25960054 25960359 -171235073 + L1Md_F2 LINE L1 6274 6571 -11 6 783 1627 231 123 55 chr1 25960577 25961209 -171234223 - RMER6C LTR ERVK -15 675 1 6 783 604 295 53 16 chr1 25961574 25961877 -171233555 + L1MEg LINE L1 502 815 -5269 6 783 638 66 0 1 chr1 25961920 25962010 -171233422 + B1_Mus2 SINE Alu 52 140 -9 6 783 224 30 0 29 chr1 25962010 25962044 -171233388 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 6 783 770 304 21 25 chr1 25962226 25962509 -171232923 + B4A SINE B4 1 282 -10 6 783 1148 79 12 0 chr1 25962917 25963081 -171232351 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 6 783 333 194 75 52 chr1 25963081 25963255 -171232177 - RMER17C LTR ERVK -136 274 97 6 783 229 288 97 60 chr1 25963475 25963723 -171231709 - L1MA7 LINE L1 -118 6173 5917 6 783 916 216 5 25 chr1 25964305 25964509 -171230923 - RMER30 DNA MER1_type -1 201 2 6 783 908 75 0 0 chr1 25966222 25966342 -171229090 - B1_Mm SINE Alu 0 147 28 6 783 239 67 0 0 chr1 25966568 25966598 -171228834 + (T)n Simple_repeat Simple_repeat 1 30 0 6 783 39526 29 0 6 chr1 25966618 25972558 -171222874 + L1Md_T LINE L1 446 6344 -238 6 783 2019 84 83 46 chr1 25972558 25972906 -171222526 - RLTR10B2 LTR ERVK 0 365 5 6 783 324 48 0 0 chr1 25973017 25973059 -171222373 - RLTR10B LTR ERVK -250 42 1 6 783 7382 48 0 60 chr1 25973059 25974055 -171221377 - MMERVK10C-int LTR ERVK 0 7581 6646 6 783 2661 106 19 5 chr1 25974041 25974451 -171220981 - MMERVK10C-int LTR ERVK -1771 5810 5002 6 783 412 294 41 41 chr1 25974461 25974681 -171220751 - MMERVK10C-int LTR ERVK -6015 1566 1347 6 783 2509 16 115 9 chr1 25974676 25975014 -171220418 - MMERVK10C-int LTR ERVK -1074 913 553 6 783 227 118 56 42 chr1 25975014 25975085 -171220347 + CT-rich Low_complexity Low_complexity 3 74 0 6 783 2194 49 0 0 chr1 25975161 25975428 -171220004 - MMERVK10C-int LTR ERVK -7314 267 1 6 783 2000 87 83 46 chr1 25975428 25975776 -171219656 - RLTR10B2 LTR ERVK 0 365 5 6 783 320 71 0 0 chr1 25975899 25975941 -171219491 - RLTR10B LTR ERVK -250 42 1 6 783 2055 29 0 0 chr1 25975941 25976214 -171219218 + L1Md_A LINE L1 6339 6582 0 6 783 517 319 60 89 chr1 25976949 25977246 -171218186 - MLT1C LTR MaLR -28 439 151 6 783 1051 216 5 5 chr1 25977246 25977469 -171217963 - URR1B DNA MER1_type -1 224 2 6 783 517 319 60 89 chr1 25977469 25977519 -171217913 - MLT1C LTR MaLR -317 150 102 6 783 22 35 0 0 chr1 25979060 25979089 -171216343 + AT_rich Low_complexity Low_complexity 1 29 0 6 783 417 313 71 44 chr1 25980024 25980380 -171215052 - MLT1D LTR MaLR -10 495 91 6 783 344 342 155 24 chr1 25980836 25981043 -171214389 - MTE2b LTR MaLR -2 377 144 6 783 498 108 0 0 chr1 25981093 25981176 -171214256 + (CCA)n Simple_repeat Simple_repeat 1 83 0 6 783 686 246 0 0 chr1 25981183 25981317 -171214115 - B1_Mur4 SINE Alu -15 135 2 6 783 591 258 0 30 chr1 25981324 25981456 -171213976 - MTE2b LTR MaLR -251 128 1 6 783 269 353 39 20 chr1 25981456 25981584 -171213848 + MLT1A1 LTR MaLR 83 213 -195 6 783 2097 120 0 3 chr1 25982254 25982564 -171212868 - Lx LINE L1 -3 6651 6343 6 783 342 0 0 0 chr1 25983222 25983260 -171212172 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 783 477 0 0 0 chr1 25984265 25984318 -171211114 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 783 6509 137 38 2 chr1 25984495 25985765 -171209667 + L1Md_F LINE L1 104 1425 -4458 6 783 339 42 62 0 chr1 25985760 25985808 -171209624 + L1Md_F LINE L1 2840 2890 -2993 6 783 6020 94 28 5 chr1 25985806 25986921 -171208511 + L1Md_F LINE L1 363 1510 -4373 6 783 19113 94 32 0 chr1 25986920 25989421 -171206011 + L1Md_F LINE L1 2717 5232 -651 6 783 561 15 0 0 chr1 25989421 25989487 -171205945 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 783 19113 94 32 0 chr1 25989487 25989764 -171205668 + L1Md_F LINE L1 5233 5580 -303 6 783 271 68 0 0 chr1 25989764 25989808 -171205624 + RLTR10B2 LTR ERVK 1 44 -321 6 783 1700 65 93 8 chr1 25989809 25990055 -171205377 + MMERVK10C-int LTR ERVK 1 267 -7314 6 783 734 89 0 0 chr1 25990092 25990193 -171205239 - BC1_Mm scRNA scRNA -51 101 1 6 783 212 224 0 33 chr1 25990210 25990270 -171205162 + A-rich Low_complexity Low_complexity 3 60 0 6 783 349 160 0 57 chr1 25990274 25990380 -171205052 + GA-rich Low_complexity Low_complexity 1 100 0 6 783 252 211 0 0 chr1 25990380 25990432 -171205000 + RLTR10-int LTR ERVK 93 144 -6398 6 783 2710 68 0 0 chr1 25990430 25990769 -171204663 + RLTR10-int LTR ERVK 654 992 -995 6 783 485 310 20 20 chr1 25990917 25991118 -171204314 + IAP-d-int LTR ERVK 822 1022 -5520 6 783 343 194 0 0 chr1 25991209 25991271 -171204161 + IAP-d-int LTR ERVK 442 503 -6039 6 783 1417 107 112 0 chr1 25991271 25991495 -171203937 + IAP-d-int LTR ERVK 5007 5255 -1287 6 783 4128 123 9 1 chr1 25991495 25992177 -171203255 + IAPEY3-int LTR ERVK 6965 7680 0 6 783 2900 38 0 85 chr1 25992177 25992576 -171202856 + RLTR10B2 LTR ERVK 1 365 0 6 783 1264 76 2 7 chr1 25992585 25992764 -171202668 + IAPEY3-int LTR ERVK 40 267 -7314 6 783 226 254 0 17 chr1 25992805 25992865 -171202567 + A-rich Low_complexity Low_complexity 2 60 0 6 783 660 98 0 67 chr1 25992869 25993033 -171202399 + GA-rich Low_complexity Low_complexity 1 153 0 6 783 7288 81 1 11 chr1 25993068 25994061 -171201371 + L1Md_F2 LINE L1 5588 6570 -12 6 783 403 321 24 30 chr1 25995958 25996122 -171199310 - MTD LTR MaLR -252 167 5 6 783 29 47 0 0 chr1 25996280 25996323 -171199109 + AT_rich Low_complexity Low_complexity 1 43 0 6 783 596 277 93 25 chr1 25996431 25996689 -171198743 - L1M3 LINE L1 -743 5397 5121 6 783 297 0 0 0 chr1 25996689 25996722 -171198710 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 783 596 277 93 25 chr1 25996722 25996830 -171198602 - L1M3 LINE L1 -1020 5120 5007 6 783 378 0 0 0 chr1 25996862 25996904 -171198528 + (TATG)n Simple_repeat Simple_repeat 1 42 0 6 783 180 0 0 0 chr1 25996904 25996924 -171198508 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 6 783 834 330 104 20 chr1 25997001 25997357 -171198075 + MTC LTR MaLR 36 421 0 6 783 252 339 35 43 chr1 25997404 25997635 -171197797 + L1MB1 LINE L1 5520 5748 -441 6 783 400 276 19 9 chr1 25997699 25997805 -171197627 + B3A SINE B2 1 107 -91 6 783 366 23 0 0 chr1 25997844 25997887 -171197545 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 783 180 0 0 0 chr1 25997916 25997936 -171197496 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 783 34 42 0 0 chr1 25997936 25997984 -171197448 + AT_rich Low_complexity Low_complexity 1 48 0 6 783 362 290 104 12 chr1 25998020 25998271 -171197161 + L1MB1 LINE L1 5888 6161 -28 6 783 1198 112 0 6 chr1 25998293 25998472 -171196960 + B2_Mm2 SINE B2 3 180 -15 6 783 6613 141 29 5 chr1 25998472 25999859 -171195573 + Lx LINE L1 5235 6653 -1 6 783 22 0 0 0 chr1 25999872 25999894 -171195538 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 3264 152 23 12 chr1 26000016 26000577 -171194855 + RMER2 LTR ERV1 1 567 0 1 783 1058 116 0 0 chr1 26000609 26000755 -171194677 - B1_Mus1 SINE Alu -1 147 2 2 783 705 56 0 0 chr1 26000758 26000848 -171194584 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 3 783 315 135 0 37 chr1 26000858 26000912 -171194520 - B2_Mm2 SINE B2 -97 98 47 4 783 1094 136 28 0 chr1 26000959 26001135 -171194297 - B2_Mm2 SINE B2 -14 181 1 5 783 291 93 0 0 chr1 26001266 26001309 -171194123 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 6 783 1069 76 0 58 chr1 26001309 26001463 -171193969 - B1_Mm SINE Alu -1 146 2 7 783 21 0 0 0 chr1 26001498 26001519 -171193913 + AT_rich Low_complexity Low_complexity 1 21 0 8 783 362 284 0 0 chr1 26002318 26002406 -171193026 + ORR1E LTR MaLR 1 88 -271 9 783 243 225 98 33 chr1 26002432 26002513 -171192919 - Lx6 LINE L1 -26 7434 7345 1 783 204 40 0 0 chr1 26002513 26002538 -171192894 + (TCC)n Simple_repeat Simple_repeat 1 25 0 1 783 351 219 29 38 chr1 26002711 26002827 -171192605 + ORR1E LTR MaLR 243 370 -9 9 783 22 35 0 0 chr1 26002918 26002947 -171192485 + AT_rich Low_complexity Low_complexity 1 29 0 1 783 327 225 59 47 chr1 26003073 26003217 -171192215 - L1MD LINE L1 -2888 3258 3118 1 783 531 0 0 0 chr1 26003233 26003292 -171192140 + (TTTTC)n Simple_repeat Simple_repeat 3 61 0 1 783 752 261 83 14 chr1 26003512 26003728 -171191704 - B3 SINE B2 0 216 7 1 783 338 358 116 32 chr1 26003737 26004280 -171191152 - L1MD LINE L1 -3301 2845 2232 1 783 1537 171 12 12 chr1 26004529 26004848 -171190584 - L1_Mur3 LINE L1 -480 5400 5082 1 783 230 260 71 60 chr1 26004866 26005050 -171190382 - L1M2 LINE L1 -363 5928 5743 1 783 11165 112 13 12 chr1 26005348 26007936 -171187496 + L1_Mus3 LINE L1 410 3000 -2883 1 783 10118 119 11 26 chr1 26007923 26010391 -171185041 + L1_Mus3 LINE L1 4219 6638 0 1 783 1190 212 229 38 chr1 26010544 26011020 -171184412 + RMER2 LTR ERV1 1 567 0 1 783 642 342 62 24 chr1 26011309 26011650 -171183782 + L1MD2 LINE L1 5786 6139 -220 2 783 626 262 7 0 chr1 26011870 26012015 -171183417 - B1_Mus2 SINE Alu -1 146 1 2 783 24 32 0 0 chr1 26012189 26012220 -171183212 + AT_rich Low_complexity Low_complexity 1 31 0 2 783 22 88 0 0 chr1 26012671 26012728 -171182704 + AT_rich Low_complexity Low_complexity 1 57 0 2 783 749 314 126 12 chr1 26012751 26013183 -171182249 + Lx8 LINE L1 6793 7273 -200 2 783 1358 30 0 6 chr1 26013240 26013408 -171182024 + (TCTCC)n Simple_repeat Simple_repeat 2 168 0 2 783 18636 180 83 65 chr1 26013439 26019720 -171175712 - L1_Mus3 LINE L1 -7 6631 245 2 783 239 286 13 0 chr1 26019736 26019813 -171175619 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 783 348 48 31 31 chr1 26019898 26019962 -171175470 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 2 783 275 332 90 25 chr1 26019965 26020166 -171175266 - B4 SINE B4 -69 223 10 2 783 446 205 32 39 chr1 26020352 26020501 -171174931 - Lx7 LINE L1 -8 7688 7559 3 783 619 266 10 54 chr1 26020582 26020785 -171174647 - Lx7 LINE L1 -276 7420 7227 3 783 559 339 5 54 chr1 26021775 26021978 -171173454 + B3A SINE B2 1 193 -5 3 783 2102 92 163 0 chr1 26022882 26023219 -171172213 - L1_Mus2 LINE L1 0 6566 6175 3 783 2300 65 0 0 chr1 26023209 26023502 -171171930 + L1_Mus2 LINE L1 5871 6163 -403 3 783 254 329 59 0 chr1 26023911 26023937 -171171495 + B3A SINE B2 1 26 -172 3 783 2194 121 14 14 chr1 26023937 26024297 -171171135 + L1_Mus3 LINE L1 6275 6634 -4 3 783 279 293 0 0 chr1 26024297 26024355 -171171077 + B3 SINE B2 31 88 -128 3 783 28 0 0 0 chr1 26024425 26024453 -171170979 + AT_rich Low_complexity Low_complexity 1 28 0 3 783 576 310 12 65 chr1 26024485 26024567 -171170865 + B3 SINE B2 16 87 -129 3 783 3833 151 68 24 chr1 26024567 26025288 -171170144 - RMER6A LTR ERVK -3 753 1 3 783 576 310 12 65 chr1 26025288 26025374 -171170058 + B3 SINE B2 88 175 -41 3 783 338 319 26 0 chr1 26025420 26025533 -171169899 + PB1D10 SINE Alu 1 116 -1 3 783 21 36 0 0 chr1 26026681 26026709 -171168723 + AT_rich Low_complexity Low_complexity 1 28 0 3 783 531 42 0 0 chr1 26027226 26027297 -171168135 + RLTR10B2 LTR ERVK 1 71 -294 4 783 1454 70 0 5 chr1 26027297 26027485 -171167947 + MMERVK10C-int LTR ERVK 7395 7581 0 4 783 2713 55 0 112 chr1 26027485 26027896 -171167536 + RLTR10B2 LTR ERVK 1 365 0 4 783 1685 97 12 4 chr1 26028049 26028308 -171167124 - L1_Mus3 LINE L1 -3 6635 6375 4 783 803 282 0 0 chr1 26028535 26028709 -171166723 - B3 SINE B2 -37 179 6 4 783 295 241 93 0 chr1 26029481 26029589 -171165843 - Lx7 LINE L1 -20 7676 7559 4 783 1550 259 104 32 chr1 26029656 26030183 -171165249 - Lx7 LINE L1 -280 7416 6852 4 783 573 15 0 0 chr1 26030311 26030377 -171165055 + (TTA)n Simple_repeat Simple_repeat 1 66 0 4 783 441 345 7 67 chr1 26030525 26030808 -171164624 - Lx9 LINE L1 -437 7207 6942 4 783 225 0 0 0 chr1 26030839 26030864 -171164568 + (T)n Simple_repeat Simple_repeat 1 25 0 4 783 189 74 0 0 chr1 26031911 26031938 -171163494 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 783 1569 43 0 0 chr1 26032747 26032934 -171162498 + B2_Mm1t SINE B2 2 188 -5 4 783 828 293 89 30 chr1 26033006 26033277 -171162155 + B4A SINE B4 6 292 0 5 783 3503 105 21 11 chr1 26033343 26033873 -171161559 + L1_Mus4 LINE L1 6097 6631 -5 5 783 242 99 69 14 chr1 26033935 26034007 -171161425 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 5 783 310 269 188 18 chr1 26034590 26034760 -171160672 - L1M5 LINE L1 -1201 4945 4747 5 783 227 359 80 37 chr1 26035037 26035199 -171160233 - LTR16B2 LTR ERVL -147 315 147 5 783 263 264 54 11 chr1 26035241 26035333 -171160099 - Lx6 LINE L1 -386 7074 6979 5 783 809 232 25 15 chr1 26035339 26035540 -171159892 + Lx6 LINE L1 7258 7460 0 5 783 324 340 58 7 chr1 26035659 26035813 -171159619 + L1MC4 LINE L1 6445 6606 -1436 5 783 727 255 0 20 chr1 26036181 26036333 -171159099 - B1_Mur1 SINE Alu 0 149 1 5 783 1215 277 40 40 chr1 26036602 26037102 -171158330 + Lx9 LINE L1 6939 7438 -206 5 783 702 0 0 0 chr1 26037142 26037220 -171158212 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 783 408 71 0 0 chr1 26037782 26037838 -171157594 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 783 197 133 71 0 chr1 26038107 26038205 -171157227 + (TA)n Simple_repeat Simple_repeat 2 106 0 6 783 3757 70 46 11 chr1 26038413 26038936 -171156496 - L1_Mus2 LINE L1 -1 6565 6025 6 783 13437 174 11 17 chr1 26038936 26040475 -171154957 - L1VL2 LINE L1 -1473 4413 2891 6 783 966 51 38 6 chr1 26040475 26040633 -171154799 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 6 783 13437 174 11 17 chr1 26040633 26040663 -171154769 - L1VL2 LINE L1 -2996 2890 2871 6 783 929 133 0 6 chr1 26040663 26040822 -171154610 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 6 783 13437 182 39 23 chr1 26040822 26042167 -171153265 - L1VL2 LINE L1 -3016 2870 599 6 783 883 328 31 10 chr1 26042166 26042681 -171152751 - L1M2 LINE L1 -776 5367 4842 6 783 375 356 71 40 chr1 26042682 26043106 -171152326 - L1M2 LINE L1 -3573 2570 2134 6 783 282 282 13 51 chr1 26043446 26043603 -171151829 - MusHAL1 LINE L1 -2148 564 414 6 783 25 0 0 0 chr1 26044070 26044095 -171151337 + AT_rich Low_complexity Low_complexity 1 25 0 6 783 13871 124 16 4 chr1 26044236 26047215 -171148217 - L1_Mus3 LINE L1 -3 6635 3624 7 783 1241 108 5 0 chr1 26047211 26047397 -171148035 + MusHAL1 LINE L1 625 811 -1901 7 783 950 230 39 13 chr1 26047825 26048054 -171147378 - Lx9 LINE L1 -741 6903 6669 7 783 336 291 0 0 chr1 26048063 26048173 -171147259 + Lx9 LINE L1 7533 7642 -2 7 783 333 0 0 0 chr1 26048218 26048255 -171147177 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 783 4046 34 0 0 chr1 26049341 26049816 -171145616 + L1Md_T LINE L1 6108 6582 0 7 783 546 216 0 0 chr1 26051322 26051447 -171143985 + (TA)n Simple_repeat Simple_repeat 1 125 0 7 783 819 196 0 0 chr1 26051486 26051659 -171143773 + (CATA)n Simple_repeat Simple_repeat 2 174 0 7 783 443 292 0 11 chr1 26051662 26051842 -171143590 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 7 783 599 211 11 17 chr1 26051838 26052016 -171143416 + (CATA)n Simple_repeat Simple_repeat 4 180 0 7 783 447 208 0 63 chr1 26052062 26052252 -171143180 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 8 783 265 303 13 13 chr1 26052413 26052490 -171142942 + B1F SINE Alu 37 113 -36 8 783 21 0 0 0 chr1 26052535 26052556 -171142876 + AT_rich Low_complexity Low_complexity 1 21 0 8 783 405 0 0 0 chr1 26052926 26052971 -171142461 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 783 30 27 0 0 chr1 26053118 26053155 -171142277 + AT_rich Low_complexity Low_complexity 1 37 0 8 783 398 184 222 62 chr1 26053158 26053320 -171142112 - Lx5 LINE L1 0 7050 6863 8 783 559 169 74 25 chr1 26053312 26053433 -171141999 - Lx4B LINE L1 -431 6627 6501 8 783 2031 302 65 27 chr1 26054048 26054796 -171140636 - Lx9 LINE L1 -451 7193 6435 8 783 186 43 0 0 chr1 26054796 26054819 -171140613 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 783 2031 302 65 27 chr1 26054819 26054876 -171140556 - Lx9 LINE L1 -1210 6434 6360 8 783 423 0 0 0 chr1 26054898 26054945 -171140487 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 783 391 101 25 0 chr1 26054945 26055023 -171140409 + (TA)n Simple_repeat Simple_repeat 2 82 0 9 783 973 251 59 48 chr1 26055230 26055670 -171139762 - L1_Rod LINE L1 -1346 4501 4057 9 783 1227 267 32 62 chr1 26056022 26056198 -171139234 - ORR1D1 LTR MaLR -11 363 202 9 783 2233 70 0 0 chr1 26056198 26056485 -171138947 - L1_Mus1 LINE L1 -17 6550 6264 9 783 1227 267 32 62 chr1 26056485 26056679 -171138753 - ORR1D1 LTR MaLR -173 201 4 9 783 217 0 29 29 chr1 26056854 26056888 -171138544 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 9 783 959 99 35 0 chr1 26056893 26057034 -171138398 - B1_Mus1 SINE Alu -1 147 2 9 783 2585 147 31 25 chr1 26057324 26057771 -171137661 + Lx4A LINE L1 6609 7058 0 9 783 22 0 0 0 chr1 26057775 26057797 -171137635 + AT_rich Low_complexity Low_complexity 1 22 0 9 783 6363 49 13 1 chr1 26057804 26058657 -171136775 - L1Md_F2 LINE L1 -201 6381 5519 9 783 711 164 13 40 chr1 26059879 26060031 -171135401 - Lx LINE L1 -9 7049 6902 9 783 265 149 30 0 chr1 26060407 26060474 -171134958 + GA-rich Low_complexity Low_complexity 2 70 0 1 783 2536 91 17 22 chr1 26060487 26060893 -171134539 + L1_Mur1 LINE L1 4263 4666 -1220 1 783 33 25 0 0 chr1 26060893 26060933 -171134499 + AT_rich Low_complexity Low_complexity 1 40 0 1 783 7128 153 85 6 chr1 26060933 26063011 -171132421 - Lx LINE L1 -25 6629 4360 9 783 30383 68 5 0 chr1 26063009 26067740 -171127692 - L1Md_F2 LINE L1 -2 6580 1839 1 783 1308 61 6 0 chr1 26067738 26067901 -171127531 - L1Md_F2 LINE L1 -5783 833 670 1 783 1418 169 0 0 chr1 26067893 26068130 -171127302 - L1Md_F2 LINE L1 -6282 334 98 1 783 3273 116 10 74 chr1 26068136 26068175 -171127257 + MusHAL1 LINE L1 1850 1878 -834 1 783 1078 95 0 0 chr1 26068175 26068322 -171127110 + B1_Mm SINE Alu 1 147 0 1 783 3273 116 10 74 chr1 26068322 26068904 -171126528 + MusHAL1 LINE L1 1879 2431 -281 1 783 9071 113 8 82 chr1 26068922 26071313 -171124119 + Lx3A LINE L1 4654 6854 -127 1 783 510 17 0 0 chr1 26071313 26071372 -171124060 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 783 9071 122 12 9 chr1 26071372 26071483 -171123949 + Lx3A LINE L1 6855 6973 -8 1 783 5301 181 12 18 chr1 26071521 26072587 -171122845 + Lx2B LINE L1 5940 6999 -1 1 783 270 314 40 20 chr1 26073260 26073393 -171122039 - L2a LINE L2 0 3426 3241 1 783 622 33 22 0 chr1 26073512 26073604 -171121828 + L1Md_F2 LINE L1 6487 6580 -2 1 783 21 71 0 0 chr1 26073639 26073681 -171121751 + AT_rich Low_complexity Low_complexity 1 42 0 1 783 376 209 29 0 chr1 26074036 26074141 -171121291 + GA-rich Low_complexity Low_complexity 4 111 0 1 783 211 286 55 77 chr1 26074368 26074459 -171120973 + L2a LINE L2 3338 3426 0 1 783 186 270 0 0 chr1 26075827 26075901 -171119531 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 1 783 1725 165 134 19 chr1 26075902 26076267 -171119165 + MTB_Mm LTR MaLR 1 407 0 1 783 28 0 0 0 chr1 26076307 26076335 -171119097 + AT_rich Low_complexity Low_complexity 1 28 0 1 783 1763 127 39 0 chr1 26076340 26076624 -171118808 - RMER6A LTR ERVK -443 313 19 1 783 36 53 0 0 chr1 26076724 26076781 -171118651 + AT_rich Low_complexity Low_complexity 1 57 0 1 783 405 0 0 0 chr1 26077787 26077832 -171117600 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 783 1991 217 21 2 chr1 26078235 26078655 -171116777 - Lx9 LINE L1 -584 7060 6633 1 783 328 208 28 0 chr1 26078712 26078784 -171116648 + Lx9 LINE L1 7105 7178 -466 1 783 811 268 41 54 chr1 26078803 26079193 -171116239 + Lx9 LINE L1 7238 7622 -22 1 783 48 72 0 0 chr1 26079210 26079307 -171116125 + AT_rich Low_complexity Low_complexity 1 97 0 1 783 1154 48 0 27 chr1 26079317 26079467 -171115965 - B1_Mus1 SINE Alu 0 148 3 1 783 253 359 44 15 chr1 26079582 26079695 -171115737 - B1F SINE Alu 0 120 12 1 783 2128 84 10 7 chr1 26079697 26079998 -171115434 + Lx3_Mus LINE L1 6708 7009 0 1 783 4189 135 47 3 chr1 26080665 26081349 -171114083 + Lx2A1 LINE L1 6292 7005 -3 1 783 26 50 0 0 chr1 26081477 26081517 -171113915 + AT_rich Low_complexity Low_complexity 1 40 0 1 783 227 239 82 52 chr1 26081567 26081664 -171113768 + L1_Mur3 LINE L1 5349 5448 -432 1 783 537 16 0 0 chr1 26081728 26081790 -171113642 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 783 21 36 0 0 chr1 26082096 26082124 -171113308 + AT_rich Low_complexity Low_complexity 1 28 0 1 783 295 349 22 37 chr1 26082481 26082615 -171112817 + B1_Mm SINE Alu 1 132 -15 1 783 285 319 18 117 chr1 26082615 26082636 -171112796 + ID_B1 SINE B4 113 224 0 1 783 1074 95 0 0 chr1 26082722 26082901 -171112531 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 783 574 56 0 43 chr1 26082933 26083026 -171112406 + (GGAGA)n Simple_repeat Simple_repeat 2 90 0 1 784 360 302 51 80 chr1 26083879 26084055 -171111377 + B3A SINE B2 28 198 0 1 784 242 271 88 29 chr1 26084126 26084263 -171111169 + L1M5 LINE L1 5326 5470 -709 1 784 195 183 24 12 chr1 26085881 26085964 -171109468 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 784 266 308 41 6 chr1 26086922 26087092 -171108340 + L1_Mur3 LINE L1 1256 1431 -4449 1 784 675 57 0 0 chr1 26087155 26087243 -171108189 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 1 784 796 249 11 0 chr1 26087258 26087523 -171107909 + L1_Mur3 LINE L1 1460 1727 -4153 1 784 5889 58 16 31 chr1 26087538 26088353 -171107079 + RLTR13B4 LTR ERVK 1 803 0 1 784 486 314 66 24 chr1 26088353 26088731 -171106701 + L1_Mur3 LINE L1 1732 2125 -3755 1 784 3317 150 50 22 chr1 26088744 26089344 -171106088 + Lx LINE L1 6017 6633 -21 1 784 684 220 177 5 chr1 26089334 26089549 -171105883 + L1_Mur3 LINE L1 2147 2398 -3482 1 784 1460 269 82 36 chr1 26089701 26090360 -171105072 + L1_Mur3 LINE L1 3412 4100 -1780 1 784 529 277 144 55 chr1 26090384 26090677 -171104755 + L1_Mur3 LINE L1 4970 5296 -590 1 784 1220 181 9 0 chr1 26090703 26090918 -171104514 + RMER6D LTR ERVK 114 330 -390 1 784 276 91 0 0 chr1 26090923 26090967 -171104465 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 784 2522 60 0 9 chr1 26090967 26091303 -171104129 - IAPLTR4 LTR ERVK -12 333 1 1 784 336 171 0 0 chr1 26091316 26091398 -171104034 + GA-rich Low_complexity Low_complexity 1 82 0 1 784 978 255 88 61 chr1 26091401 26091829 -171103603 + RMER2 LTR ERV1 1 545 -22 1 784 1531 216 18 128 chr1 26091847 26092145 -171103287 + RMER6D LTR ERVK 333 617 -103 1 784 1160 68 0 0 chr1 26092145 26092292 -171103140 + B1_Mm SINE Alu 1 147 0 1 784 1531 216 18 128 chr1 26092292 26092429 -171103003 + RMER6D LTR ERVK 618 720 0 1 784 613 277 123 30 chr1 26092429 26092794 -171102638 + L1_Mur3 LINE L1 5269 5667 -213 1 784 817 333 31 57 chr1 26092854 26093242 -171102190 + Lx8 LINE L1 6554 6931 -542 1 784 470 281 16 8 chr1 26093268 26093397 -171102035 + Lx8 LINE L1 7108 7237 -236 1 784 234 93 32 75 chr1 26093397 26093490 -171101942 + T-rich Low_complexity Low_complexity 3 91 0 1 784 22 70 0 0 chr1 26093699 26093742 -171101690 + AT_rich Low_complexity Low_complexity 1 43 0 1 784 2418 126 28 2 chr1 26093816 26094214 -171101218 + L1_Mur1 LINE L1 3538 3945 -1941 1 784 477 0 0 0 chr1 26094215 26094268 -171101164 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 784 26706 136 19 17 chr1 26094717 26099868 -171095564 - L1Md_F LINE L1 -635 5605 417 1 784 2126 111 0 0 chr1 26100893 26101199 -171094233 + L1Md_F2 LINE L1 6265 6570 -12 1 784 253 0 54 0 chr1 26101217 26101254 -171094178 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 784 223 277 15 0 chr1 26102969 26103034 -171092398 + (TATG)n Simple_repeat Simple_repeat 3 68 0 1 784 391 294 198 36 chr1 26103036 26103283 -171092149 - B4 SINE B4 -4 288 2 1 784 23 33 0 0 chr1 26104233 26104263 -171091169 + AT_rich Low_complexity Low_complexity 1 30 0 1 784 712 240 108 15 chr1 26104310 26104505 -171090927 - B3 SINE B2 -3 213 1 1 784 301 279 35 0 chr1 26104699 26104785 -171090647 + MLT1A LTR MaLR 1 89 -285 1 784 1186 244 77 19 chr1 26104818 26104951 -171090481 + ORR1D2 LTR MaLR 40 173 -197 1 784 393 22 0 0 chr1 26104951 26104997 -171090435 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 784 1186 244 77 19 chr1 26104997 26105176 -171090256 + ORR1D2 LTR MaLR 174 369 -1 1 784 21 36 0 0 chr1 26105433 26105461 -171089971 + AT_rich Low_complexity Low_complexity 1 28 0 1 784 488 327 6 24 chr1 26105484 26105650 -171089782 - RSINE1 SINE B4 0 165 3 1 784 216 200 0 0 chr1 26105788 26105838 -171089594 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1 784 825 269 82 78 chr1 26105875 26106194 -171089238 + MTEb LTR MaLR 54 373 -6 1 784 607 259 235 6 chr1 26106198 26106531 -171088901 + MTD LTR MaLR 3 411 -8 1 784 3899 170 47 8 chr1 26106770 26107480 -171087952 - RMER19A LTR ERVK 0 737 1 1 784 27 29 0 0 chr1 26107487 26107521 -171087911 + AT_rich Low_complexity Low_complexity 1 34 0 1 784 525 32 0 0 chr1 26108216 26108279 -171087153 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 784 229 385 8 76 chr1 26108334 26108357 -171087075 - RSINE1 SINE B4 0 165 147 1 784 270 56 0 0 chr1 26108357 26108393 -171087039 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 784 229 385 8 76 chr1 26108393 26108487 -171086945 - RSINE1 SINE B4 -19 146 56 1 784 1185 236 39 161 chr1 26110117 26110607 -171084825 - RLTR23 LTR ERV1 0 430 1 1 784 267 306 20 0 chr1 26110776 26110874 -171084558 + (TATG)n Simple_repeat Simple_repeat 1 100 0 1 784 204 121 30 0 chr1 26112010 26112043 -171083389 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 784 7581 79 23 4 chr1 26112211 26113268 -171082164 + L1_Mm LINE L1 4467 5543 -340 1 784 13007 187 280 5 chr1 26113254 26114358 -171081074 - L1VL4 LINE L1 -32 5857 4637 1 784 1035 84 0 0 chr1 26114358 26114501 -171080931 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 1 784 13007 178 225 19 chr1 26114501 26117333 -171078099 - L1VL4 LINE L1 -1253 4636 843 1 784 36 23 0 0 chr1 26117714 26117757 -171077675 + AT_rich Low_complexity Low_complexity 1 43 0 1 784 990 285 16 39 chr1 26118857 26119167 -171076265 + Lx7 LINE L1 6880 7182 -514 1 784 810 368 85 19 chr1 26119615 26120086 -171075346 + MTE-int LTR MaLR 938 1439 -141 1 784 1132 239 23 110 chr1 26120090 26120537 -171074895 + RMER19C LTR ERVK 1 391 -346 1 784 440 295 0 9 chr1 26120543 26120649 -171074783 + MTE-int LTR MaLR 1440 1544 -36 1 784 2265 206 89 19 chr1 26121033 26121548 -171073884 - RMER4B LTR ERVK -2 583 33 1 784 373 230 37 58 chr1 26121574 26121763 -171073669 - RMER17C LTR ERVK -135 275 91 1 784 29321 104 18 28 chr1 26121982 26127392 -171068040 + L1Md_F2 LINE L1 273 5586 -297 1 784 7408 73 7 4 chr1 26127392 26128373 -171067059 + L1Md_F2 LINE L1 5587 6570 -12 1 784 21 0 0 0 chr1 26128444 26128465 -171066967 + AT_rich Low_complexity Low_complexity 1 21 0 1 784 25267 109 2 31 chr1 26129880 26134574 -171060858 - L1_Mus1 LINE L1 0 6567 2009 1 784 1222 167 0 35 chr1 26134572 26134801 -171060631 - L1VL1 LINE L1 -6201 221 1 1 784 330 268 14 0 chr1 26135816 26135887 -171059545 - B3 SINE B2 -11 205 134 1 784 515 56 14 0 chr1 26136107 26136178 -171059254 + (GAA)n Simple_repeat Simple_repeat 2 73 0 1 784 989 325 103 3 chr1 26136180 26136709 -171058723 + Lx7 LINE L1 6036 6645 -828 1 784 879 132 90 0 chr1 26136797 26136941 -171058491 + B2_Mm2 SINE B2 2 158 -37 1 784 879 0 27 0 chr1 26136942 26137053 -171058379 + (GA)n Simple_repeat Simple_repeat 1 114 0 1 784 1701 313 25 23 chr1 26137053 26137743 -171057689 + Lx7 LINE L1 6706 7396 -300 1 784 5733 159 19 9 chr1 26137887 26138907 -171056525 - Lx2 LINE L1 -2 6995 5966 1 784 688 96 0 0 chr1 26138907 26139001 -171056431 - Lx2A1 LINE L1 -1147 5861 5768 1 784 232 128 0 0 chr1 26138995 26139034 -171056398 + L1Md_T LINE L1 5669 5707 -875 1 784 192 40 0 0 chr1 26139311 26139336 -171056096 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 784 1180 61 0 0 chr1 26139343 26139491 -171055941 - B1_Mus1 SINE Alu 0 148 1 1 784 21 57 0 0 chr1 26139766 26139801 -171055631 + AT_rich Low_complexity Low_complexity 1 35 0 1 784 647 279 56 3 chr1 26139949 26140238 -171055194 + L1MA4 LINE L1 5662 5938 -362 2 784 300 53 0 0 chr1 26140262 26140300 -171055132 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 784 555 16 0 0 chr1 26140300 26140363 -171055069 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 784 1465 204 102 6 chr1 26140429 26140579 -171054853 + ORR1B2 LTR MaLR 1 159 -208 2 784 744 65 0 0 chr1 26140579 26140686 -171054746 + (TC)n Simple_repeat Simple_repeat 1 107 0 2 784 1465 204 102 6 chr1 26140686 26140870 -171054562 + ORR1B2 LTR MaLR 160 367 0 2 784 606 319 122 34 chr1 26141048 26141311 -171054121 + B4A SINE B4 7 292 0 2 784 826 303 88 39 chr1 26142108 26142414 -171053018 + ORR1D1 LTR MaLR 1 321 -53 2 784 495 0 0 0 chr1 26142640 26142695 -171052737 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 784 183 100 0 0 chr1 26142699 26142729 -171052703 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 784 213 94 0 0 chr1 26144709 26144741 -171050691 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 784 354 45 0 0 chr1 26146067 26146111 -171049321 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2 784 386 61 0 0 chr1 26146111 26146160 -171049272 + HAL1-3A_ME LINE L1 1976 2024 -834 2 784 1402 150 7 57 chr1 26146160 26146443 -171048989 - Lx3B LINE L1 -679 6294 6026 2 784 3628 289 46 72 chr1 26146447 26146654 -171048778 + Lx5 LINE L1 5615 5823 -1227 2 784 1950 51 0 27 chr1 26146654 26146914 -171048518 + L1Md_F2 LINE L1 6330 6582 0 2 784 3628 289 46 72 chr1 26146914 26147576 -171047856 + Lx5 LINE L1 5824 6452 -598 2 784 180 77 0 0 chr1 26147576 26147602 -171047830 + (TAAG)n Simple_repeat Simple_repeat 2 27 0 2 784 3628 289 46 72 chr1 26147602 26148153 -171047279 + Lx5 LINE L1 6453 6999 -51 2 784 232 78 19 38 chr1 26148185 26148238 -171047194 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 784 475 248 32 49 chr1 26148361 26148484 -171046948 - MT2A LTR ERVL -412 121 1 2 784 593 228 170 0 chr1 26148615 26148786 -171046646 - B3 SINE B2 -14 202 3 2 784 1477 151 7 48 chr1 26149771 26150043 -171045389 - Lx2 LINE L1 -104 5779 5519 2 784 7287 157 2 2 chr1 26150042 26151230 -171044202 + Lx2 LINE L1 5742 6930 -67 2 784 1547 208 27 74 chr1 26151232 26151678 -171043754 - L1_Mur3 LINE L1 -1017 4863 4439 2 784 323 146 116 47 chr1 26151713 26151743 -171043689 - L1_Mur3 LINE L1 -1403 4477 4439 2 784 1292 72 0 11 chr1 26151743 26151925 -171043507 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 784 972 122 0 0 chr1 26151933 26152072 -171043360 - B1_Mus1 SINE Alu -8 140 2 2 784 323 146 116 47 chr1 26152072 26152161 -171043271 - L1_Mur3 LINE L1 -1451 4429 4341 2 784 1477 296 14 39 chr1 26152161 26152597 -171042835 + Lx6 LINE L1 6859 7283 -177 2 784 261 266 61 41 chr1 26152669 26152767 -171042665 + Lx7 LINE L1 7197 7296 -400 2 784 238 270 7 28 chr1 26152783 26152924 -171042508 + (TTTG)n Simple_repeat Simple_repeat 2 139 0 2 784 34 42 0 0 chr1 26152992 26153040 -171042392 + AT_rich Low_complexity Low_complexity 1 48 0 2 784 7346 48 2 1 chr1 26153593 26154505 -171040927 + L1Md_F2 LINE L1 5670 6582 0 2 784 210 224 41 0 chr1 26154923 26154972 -171040460 + L4 LINE RTE 1259 1309 -720 2 784 2100 178 52 10 chr1 26156169 26156573 -171038859 + MTC LTR MaLR 1 421 0 2 784 266 125 36 0 chr1 26156698 26156754 -171038678 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2 784 270 0 0 0 chr1 26157077 26157107 -171038325 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 784 609 155 15 8 chr1 26157109 26157239 -171038193 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 784 386 39 19 0 chr1 26157346 26157398 -171038034 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 784 463 248 28 0 chr1 26157405 26157514 -171037918 - MTEa LTR MaLR -13 366 255 2 784 427 285 35 35 chr1 26157497 26157639 -171037793 - MTEa LTR MaLR -233 146 5 2 784 1488 315 61 14 chr1 26157639 26158148 -171037284 - MT2A LTR ERVL 0 533 1 2 784 463 195 37 82 chr1 26158216 26158350 -171037082 + L1_Rod LINE L1 5300 5427 -420 2 784 440 208 88 63 chr1 26158346 26158551 -171036881 + Lx9 LINE L1 7305 7514 -130 2 784 231 36 0 0 chr1 26158882 26158910 -171036522 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 784 281 263 61 8 chr1 26159177 26159368 -171036064 + L1M2 LINE L1 5634 5844 -468 2 784 471 35 0 0 chr1 26159462 26159519 -171035913 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 784 6792 127 17 7 chr1 26159635 26160766 -171034666 - L1_Mm LINE L1 -1401 4482 3341 2 784 8557 138 12 9 chr1 26160767 26162563 -171032869 - L1VL4 LINE L1 -1222 2337 597 2 784 348 216 155 21 chr1 26162628 26162770 -171032662 + L1M4 LINE L1 4252 4412 -1734 2 784 1456 268 58 15 chr1 26162783 26163177 -171032255 + MTD LTR MaLR 1 411 -8 2 784 1447 194 91 22 chr1 26163186 26163591 -171031841 - L1Md_F LINE L1 -5667 852 420 2 784 262 244 211 53 chr1 26163591 26163686 -171031746 - ORR1C1 LTR MaLR -167 211 102 2 784 289 226 61 61 chr1 26163721 26163820 -171031612 + ORR1D2 LTR MaLR 9 107 -263 2 784 450 246 8 0 chr1 26164083 26164201 -171031231 + Lx2 LINE L1 6878 6996 -1 2 784 25 51 0 0 chr1 26164214 26164253 -171031179 + AT_rich Low_complexity Low_complexity 1 39 0 2 784 1020 122 0 0 chr1 26164786 26164933 -171030499 + B1_Mus1 SINE Alu 1 147 -1 2 784 291 164 0 0 chr1 26164933 26164994 -171030438 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 2 784 494 314 128 21 chr1 26165088 26165472 -171029960 - L1MB7 LINE L1 -181 6003 5579 2 784 194 91 30 0 chr1 26165601 26165634 -171029798 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 784 247 270 84 103 chr1 26165643 26165953 -171029479 - L1MB7 LINE L1 -798 5348 5045 2 784 272 355 19 0 chr1 26166109 26166216 -171029216 - MLT1B LTR MaLR 0 390 282 2 784 715 325 63 33 chr1 26167509 26167808 -171027624 + MLT1A0 LTR MaLR 39 346 -19 2 784 294 50 0 0 chr1 26167810 26167850 -171027582 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 784 27 0 0 0 chr1 26168405 26168432 -171027000 + AT_rich Low_complexity Low_complexity 1 27 0 2 784 333 374 29 0 chr1 26168451 26168590 -171026842 - B3 SINE B2 -11 205 63 2 784 390 42 0 0 chr1 26168705 26168753 -171026679 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 784 264 59 0 0 chr1 26168841 26168875 -171026557 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 784 180 0 0 0 chr1 26168980 26169000 -171026432 + (A)n Simple_repeat Simple_repeat 1 20 0 2 784 243 0 0 0 chr1 26169407 26169434 -171025998 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 784 439 327 79 86 chr1 26169434 26169852 -171025580 - RMER10A LTR ERVL -27 415 1 2 784 447 266 25 158 chr1 26169929 26170295 -171025137 - RMER10A LTR ERVL -2 440 124 2 784 186 0 28 56 chr1 26170514 26170550 -171024882 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 784 435 63 0 0 chr1 26171095 26171158 -171024274 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 784 2501 209 159 73 chr1 26171273 26172104 -171023328 - RMER19B LTR ERVK 0 902 1 2 784 832 172 99 26 chr1 26172212 26172403 -171023029 + RMER19B LTR ERVK 574 778 -124 2 784 298 272 71 8 chr1 26173335 26173461 -171021971 - L1M5 LINE L1 -406 5718 5585 2 784 21 71 0 0 chr1 26174009 26174051 -171021381 + AT_rich Low_complexity Low_complexity 1 42 0 2 784 381 272 12 0 chr1 26174163 26174244 -171021188 + ID4 SINE ID 1 82 -1 2 784 3207 41 13 0 chr1 26174422 26174811 -171020621 + MTA_Mm LTR MaLR 1 394 -2 2 784 7885 60 27 5 chr1 26174811 26175874 -171019558 + MTA_Mm-int LTR MaLR 11 1098 0 2 784 3244 58 0 0 chr1 26175874 26176270 -171019162 + MTA_Mm LTR MaLR 1 396 0 2 784 371 322 101 34 chr1 26178500 26178709 -171016723 + L3 LINE CR1 1931 2153 -2336 2 784 596 362 23 7 chr1 26179056 26179356 -171016076 - Lx9 LINE L1 -172 7472 7168 2 784 1000 228 183 4 chr1 26179360 26179628 -171015804 - MTD LTR MaLR 0 419 104 2 784 298 262 113 16 chr1 26179628 26179752 -171015680 - Lx8 LINE L1 -356 7117 6982 2 784 328 256 46 11 chr1 26179777 26179864 -171015568 - Lx8 LINE L1 -558 6915 6826 2 784 351 0 0 0 chr1 26179945 26179984 -171015448 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 784 240 277 15 15 chr1 26180009 26180075 -171015357 - Lx8 LINE L1 -1008 6465 6400 2 784 252 298 131 13 chr1 26180077 26180230 -171015202 + Lx8 LINE L1 7298 7468 -5 2 784 21 0 0 0 chr1 26180230 26180251 -171015181 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 591 120 0 0 chr1 26180803 26180911 -171014521 + (GA)n Simple_repeat Simple_repeat 1 108 0 2 784 192 97 0 0 chr1 26180913 26180944 -171014488 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 2 784 691 289 45 5 chr1 26181065 26181263 -171014169 + B3 SINE B2 1 206 -10 2 784 7824 121 7 109 chr1 26181265 26182167 -171013265 + L1_Mm LINE L1 3487 4359 -1524 2 784 792 90 0 26 chr1 26182167 26182281 -171013151 + B1_Mm SINE Alu 36 146 -1 2 784 7824 121 7 109 chr1 26182281 26182812 -171012620 + L1_Mm LINE L1 4360 4875 -1008 2 784 7549 77 0 6 chr1 26183002 26184292 -171011140 - L1Md_F2 LINE L1 -11 6571 5289 2 784 21172 75 35 1 chr1 26184287 26188031 -171007401 - L1Md_F2 LINE L1 -4 6578 2694 2 784 719 120 8 0 chr1 26188033 26188150 -171007282 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 2 784 371 306 20 59 chr1 26188447 26188600 -171006832 - B1F1 SINE Alu 0 147 1 2 784 372 22 0 0 chr1 26189132 26189177 -171006255 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 784 2184 238 95 16 chr1 26189334 26190216 -171005216 + Lx9 LINE L1 6692 7643 -1 2 784 197 59 0 56 chr1 26190380 26190416 -171005016 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 2 784 286 184 13 13 chr1 26190872 26190949 -171004483 + CT-rich Low_complexity Low_complexity 3 79 0 2 784 856 254 32 18 chr1 26190995 26191272 -171004160 - Lx6 LINE L1 0 7460 7180 2 784 452 256 8 16 chr1 26191284 26191407 -171004025 - Lx6 LINE L1 -135 7325 7204 2 784 3030 120 79 16 chr1 26191435 26191927 -171003505 - Lx3_Mus LINE L1 -16 6993 6471 2 784 22 0 0 0 chr1 26192487 26192509 -171002923 + AT_rich Low_complexity Low_complexity 1 22 0 2 784 24 0 0 0 chr1 26193456 26193480 -171001952 + AT_rich Low_complexity Low_complexity 1 24 0 2 784 256 298 96 34 chr1 26193604 26193750 -171001682 + MER5A DNA MER1_type 35 189 0 2 784 7626 56 6 1 chr1 26195633 26196592 -170998840 - L1Md_F2 LINE L1 0 6582 5619 3 784 463 56 28 0 chr1 26197350 26197421 -170998011 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 784 418 337 40 60 chr1 26197866 26198065 -170997367 + Lx8 LINE L1 7164 7358 -115 3 784 702 229 61 41 chr1 26198172 26198418 -170997014 - Lx9 LINE L1 -113 7531 7281 3 784 396 236 0 0 chr1 26199113 26199291 -170996141 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 784 399 299 48 122 chr1 26199291 26199603 -170995829 - B4A SINE B4 0 292 4 3 784 271 337 64 64 chr1 26200270 26200457 -170994975 - MER5A DNA MER1_type -1 188 2 3 784 655 342 58 72 chr1 26201221 26202271 -170993161 + L1MCa LINE L1 22 1056 -5452 3 784 262 172 0 99 chr1 26202267 26202338 -170993094 + L1_Rod LINE L1 5135 5198 -649 3 784 413 72 36 12 chr1 26202348 26202432 -170993000 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 784 400 343 38 10 chr1 26202479 26202688 -170992744 + L1MCa LINE L1 2713 2927 -3394 3 784 288 70 0 0 chr1 26202749 26202792 -170992640 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 784 22 0 0 0 chr1 26203159 26203181 -170992251 + AT_rich Low_complexity Low_complexity 1 22 0 3 784 228 286 20 30 chr1 26203264 26203365 -170992067 + GA-rich Low_complexity Low_complexity 2 101 0 3 784 21292 137 96 47 chr1 26204315 26210198 -170985234 + L1_Mus2 LINE L1 367 6565 -1 3 784 186 43 0 0 chr1 26210202 26210225 -170985207 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 784 1057 58 43 7 chr1 26210966 26211106 -170984326 + B1_Mm SINE Alu 3 147 0 3 784 216 0 0 0 chr1 26211107 26211131 -170984301 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 3 784 964 74 0 0 chr1 26211279 26211414 -170984018 + L1_Mus1 LINE L1 6433 6567 0 3 784 23 54 0 0 chr1 26211587 26211624 -170983808 + AT_rich Low_complexity Low_complexity 1 37 0 3 784 378 338 51 19 chr1 26213434 26213632 -170981800 - MIR SINE MIR -34 234 19 3 784 1010 229 5 5 chr1 26213870 26214081 -170981351 - B3 SINE B2 -5 211 1 3 785 192 295 105 37 chr1 26215454 26215616 -170979816 - L2a LINE L2 -13 3413 3241 3 785 216 111 0 0 chr1 26218380 26218416 -170977016 + (CAA)n Simple_repeat Simple_repeat 3 38 0 3 785 25244 96 12 1 chr1 26219214 26223531 -170971901 - L1Md_F2 LINE L1 -235 6347 1983 3 785 374 53 0 17 chr1 26223531 26223589 -170971843 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 3 785 19666 112 46 7 chr1 26223589 26225082 -170970350 - L1Md_F2 LINE L1 -3901 1982 451 3 785 1964 59 0 0 chr1 26225096 26225350 -170970082 - L1_Mm LINE L1 -4010 1873 1620 3 785 303 217 29 0 chr1 26226531 26226600 -170968832 - URR1B DNA MER1_type 0 225 155 3 785 228 277 14 71 chr1 26227120 26227190 -170968242 + RMER15 LTR ERVL 493 558 -17 3 785 732 295 43 31 chr1 26227696 26228021 -170967411 + RLTR15 LTR ERVK 1 329 -30 3 785 608 158 9 0 chr1 26228063 26228177 -170967255 + CT-rich Low_complexity Low_complexity 3 117 0 3 785 1674 148 7 7 chr1 26228226 26228512 -170966920 + Lx2A1 LINE L1 6722 7007 -1 3 785 3707 175 29 31 chr1 26228517 26229244 -170966188 + L1Md_F LINE L1 242 962 -5762 3 785 1941 128 37 3 chr1 26229244 26229543 -170965889 + RLTR27 LTR ERVK 1 309 0 3 785 29798 104 14 6 chr1 26229543 26234307 -170961125 + L1Md_F2 LINE L1 752 5583 -300 3 785 6980 92 8 5 chr1 26234310 26235291 -170960141 + L1Md_F2 LINE L1 5587 6570 -12 3 785 4305 81 5 26 chr1 26235341 26235959 -170959473 - L1Md_F2 LINE L1 -8 6574 5970 3 785 25 31 0 0 chr1 26235963 26235995 -170959437 + AT_rich Low_complexity Low_complexity 1 32 0 3 785 22 0 0 0 chr1 26236649 26236671 -170958761 + AT_rich Low_complexity Low_complexity 1 22 0 3 785 4705 201 54 5 chr1 26236878 26237816 -170957616 - Lx5 LINE L1 -3 7047 6064 3 785 447 260 0 0 chr1 26237814 26237918 -170957514 + Lx5 LINE L1 5924 6027 -1023 3 785 246 288 91 52 chr1 26238031 26238108 -170957324 - ID4 SINE ID -2 81 2 3 785 23 0 0 0 chr1 26239340 26239363 -170956069 + AT_rich Low_complexity Low_complexity 1 23 0 3 785 508 177 23 182 chr1 26240905 26241081 -170954351 - B3A SINE B2 0 198 40 3 785 405 306 6 15 chr1 26241459 26241601 -170953831 + B1F2 SINE Alu 9 149 0 3 785 351 113 0 0 chr1 26241614 26241667 -170953765 + (A)n Simple_repeat Simple_repeat 1 53 0 3 785 432 51 0 0 chr1 26241825 26241884 -170953548 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 785 308 295 43 86 chr1 26241946 26242109 -170953323 + MLT1A0 LTR MaLR 19 174 -191 3 785 190 136 0 43 chr1 26242486 26242532 -170952900 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 785 513 336 66 22 chr1 26242542 26242770 -170952662 + MLT1A0 LTR MaLR 28 265 -100 3 785 243 176 39 19 chr1 26242916 26242968 -170952464 - MLT1C LTR MaLR -82 385 333 3 785 487 189 55 6 chr1 26242955 26243079 -170952353 + MTD LTR MaLR 271 404 -15 3 785 453 306 67 31 chr1 26243098 26243544 -170951888 - L1M2 LINE L1 -708 5595 5091 3 785 1658 209 65 3 chr1 26243606 26243947 -170951485 - Lx2A1 LINE L1 -4 7004 6643 3 785 351 307 27 25 chr1 26243963 26244146 -170951286 - L1M2 LINE L1 -1116 5027 4815 3 785 583 350 6 22 chr1 26244147 26244328 -170951104 + B3A SINE B2 1 178 -20 3 785 1678 304 82 25 chr1 26244363 26245528 -170949904 - L1M2 LINE L1 -1382 4761 3531 3 785 760 287 4 12 chr1 26245518 26245765 -170949667 + Lx9 LINE L1 7240 7484 -160 3 785 2555 77 11 6 chr1 26245861 26246212 -170949220 + L1_Mus1 LINE L1 6214 6566 -1 3 785 474 330 56 22 chr1 26246307 26246539 -170948893 - L1M2 LINE L1 -2661 3482 3243 3 785 3633 200 75 82 chr1 26246593 26246896 -170948536 + L1_Mur3 LINE L1 2771 3005 -2875 3 785 1315 58 0 24 chr1 26246896 26247080 -170948352 + (GAA)n Simple_repeat Simple_repeat 1 183 -186 3 785 1315 58 0 24 chr1 26247090 26247275 -170948157 + (GAA)n Simple_repeat Simple_repeat 184 369 0 3 785 3633 200 75 82 chr1 26247275 26248124 -170947308 + L1_Mur3 LINE L1 3009 3925 -1955 3 785 604 114 15 0 chr1 26248578 26248709 -170946723 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 3 785 1056 79 0 0 chr1 26249029 26249168 -170946264 + Lx3_Mus LINE L1 6444 6582 -427 3 785 1163 93 26 0 chr1 26249168 26249361 -170946071 + Lx3_Mus LINE L1 6807 7004 -5 3 785 249 33 0 0 chr1 26250229 26250259 -170945173 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 785 1634 255 33 27 chr1 26250655 26250818 -170944614 - Lx6 LINE L1 -8 7452 7292 3 785 378 42 0 0 chr1 26250818 26250866 -170944566 + (CCA)n Simple_repeat Simple_repeat 3 50 0 3 785 1634 255 33 27 chr1 26250866 26251153 -170944279 - Lx6 LINE L1 -169 7291 6999 3 785 453 115 0 0 chr1 26253283 26253361 -170942071 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 785 21 0 0 0 chr1 26253490 26253511 -170941921 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 1682 218 16 19 chr1 26254307 26254676 -170940756 - Lx6 LINE L1 -27 7433 7066 3 785 1336 323 91 30 chr1 26255140 26255868 -170939564 - Lx8 LINE L1 -1 7472 6701 3 785 1182 313 38 40 chr1 26255979 26256405 -170939027 - Lx8 LINE L1 -752 6721 6297 3 785 343 275 13 83 chr1 26256407 26256563 -170938869 + Lx8 LINE L1 5648 5791 -1682 3 785 370 79 32 0 chr1 26256569 26256632 -170938800 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 785 22 94 0 0 chr1 26257123 26257187 -170938245 + AT_rich Low_complexity Low_complexity 1 64 0 3 785 248 350 0 32 chr1 26257453 26257577 -170937855 + GA-rich Low_complexity Low_complexity 1 120 0 3 785 396 40 0 0 chr1 26257814 26257864 -170937568 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 785 423 0 0 0 chr1 26257864 26257910 -170937522 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 785 3605 229 25 127 chr1 26257966 26258759 -170936673 - RMER1A Other Other -2 1028 254 3 785 3944 130 99 34 chr1 26258759 26259303 -170936129 - RMER17D LTR ERVK 0 889 333 3 785 708 83 0 0 chr1 26259303 26259412 -170936020 + (CGAGA)n Simple_repeat Simple_repeat 2 110 0 3 785 3944 130 99 34 chr1 26259412 26259701 -170935731 - RMER17D LTR ERVK -557 332 1 3 785 3605 259 12 106 chr1 26259701 26260367 -170935065 - RMER1A Other Other -562 504 37 3 785 228 271 79 53 chr1 26260670 26260822 -170934610 - Lx5 LINE L1 -3 7047 6892 3 785 503 252 9 0 chr1 26262155 26262266 -170933166 - MTD LTR MaLR -85 334 223 3 785 200 163 41 0 chr1 26262323 26262372 -170933060 + (CAA)n Simple_repeat Simple_repeat 2 52 0 3 785 25 31 0 0 chr1 26262615 26262647 -170932785 + AT_rich Low_complexity Low_complexity 1 32 0 3 785 1415 258 110 42 chr1 26262882 26263138 -170932294 - Lx7 LINE L1 -1251 6445 6168 3 785 408 40 0 0 chr1 26263138 26263188 -170932244 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 785 315 0 0 0 chr1 26263188 26263222 -170932210 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 785 1415 258 110 42 chr1 26263222 26263466 -170931966 - Lx7 LINE L1 -1529 6167 5911 3 785 413 48 16 0 chr1 26263466 26263529 -170931903 - L1Md_T LINE L1 -2 6580 6517 3 785 3985 213 45 14 chr1 26263559 26265479 -170929953 - Lx5 LINE L1 -3 7047 5012 3 785 1325 200 37 31 chr1 26265479 26265773 -170929659 + RLTR17 LTR ERVK 3 298 -394 3 785 1168 132 41 36 chr1 26265740 26265936 -170929496 + RLTR17 LTR ERVK 496 692 0 3 785 2513 168 47 32 chr1 26265936 26266464 -170928968 - Lx5 LINE L1 -858 5019 4484 3 785 273 203 119 0 chr1 26266630 26266689 -170928743 - RMER20B LTR ERVK -415 212 147 3 785 489 250 32 21 chr1 26266848 26266997 -170928435 - RMER20B LTR ERVK -369 147 1 3 785 726 174 57 23 chr1 26266997 26267173 -170928259 - Lx5 LINE L1 -3113 2764 2583 3 785 647 234 51 130 chr1 26267184 26267499 -170927933 - L1_Mur3 LINE L1 -1184 4696 4407 3 785 1050 133 11 27 chr1 26267522 26267708 -170927724 - B2_Mm2 SINE B2 -11 184 2 3 785 879 244 53 19 chr1 26267714 26268032 -170927400 - L1_Mur3 LINE L1 -1532 4348 4020 3 785 3829 23 0 0 chr1 26268043 26268485 -170926947 - L1_Mm LINE L1 -160 5723 5282 3 785 1948 38 4 0 chr1 26268485 26268724 -170926708 + L1Md_T LINE L1 6343 6582 0 3 785 639 264 96 63 chr1 26268742 26269045 -170926387 - L1_Mur3 LINE L1 -1872 4008 3696 3 785 745 217 7 0 chr1 26269051 26269194 -170926238 + ORR1B1 LTR MaLR 1 144 -250 3 785 227 29 0 54 chr1 26269201 26269238 -170926194 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 785 1022 275 48 51 chr1 26269242 26269653 -170925779 - L1_Mur3 LINE L1 -2415 3465 3053 3 785 1091 109 0 0 chr1 26269653 26269800 -170925632 - B1_Mus2 SINE Alu 0 147 1 3 785 1022 275 48 51 chr1 26269800 26269952 -170925480 - L1_Mur3 LINE L1 -2828 3052 2905 3 785 237 304 53 32 chr1 26270378 26270473 -170924959 - MIRb SINE MIR -74 194 98 3 785 22 0 0 0 chr1 26271711 26271733 -170923699 + AT_rich Low_complexity Low_complexity 1 22 0 3 785 269 145 0 16 chr1 26271787 26271850 -170923582 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 785 24 0 0 0 chr1 26271902 26271926 -170923506 + AT_rich Low_complexity Low_complexity 1 24 0 3 785 7037 93 7 5 chr1 26271926 26273144 -170922288 - L1_Mus2 LINE L1 -6 6560 5345 3 785 2203 166 38 52 chr1 26273144 26273529 -170921903 + Lx4B LINE L1 6613 6974 -84 3 785 194 0 0 37 chr1 26273529 26273556 -170921876 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 3 785 2203 166 38 52 chr1 26273556 26273614 -170921818 + Lx4B LINE L1 6975 7049 -9 3 785 21 36 0 0 chr1 26274044 26274072 -170921360 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 472 68 14 14 chr1 26274082 26274156 -170921276 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 785 367 341 70 0 chr1 26274164 26274293 -170921139 - B3A SINE B2 -55 143 6 4 785 302 339 26 9 chr1 26274414 26274530 -170920902 + PB1 SINE Alu 6 123 -4 4 785 3055 153 110 21 chr1 26275486 26276112 -170919320 + MTB_Mm-int LTR MaLR 577 1258 0 4 785 2636 57 3 20 chr1 26276112 26276470 -170918962 + MTB_Mm LTR MaLR 1 352 -55 4 785 894 160 13 13 chr1 26276581 26276739 -170918693 + URR1B DNA MER1_type 68 225 0 4 785 484 294 80 28 chr1 26277348 26277589 -170917843 - MTD LTR MaLR -4 415 133 4 785 482 339 5 71 chr1 26277862 26278072 -170917360 - B3A SINE B2 0 198 3 4 785 24 0 0 0 chr1 26278731 26278755 -170916677 + AT_rich Low_complexity Low_complexity 1 24 0 4 785 1392 265 37 30 chr1 26279142 26279543 -170915889 + MTD LTR MaLR 1 404 -15 4 785 2017 21 4 0 chr1 26280045 26280283 -170915149 - L1Md_F3 LINE L1 -405 6179 5941 4 785 2976 39 8 0 chr1 26280283 26280647 -170914785 + L1Md_F3 LINE L1 6204 6570 -14 4 785 376 374 75 25 chr1 26281383 26281624 -170913808 - MLT1F2 LTR MaLR -9 551 299 4 785 408 381 46 31 chr1 26281636 26281896 -170913536 - MLT1F2 LTR MaLR -296 264 1 4 785 1797 307 98 32 chr1 26282614 26283452 -170911980 - Lx8 LINE L1 -249 7224 6332 4 785 203 178 0 22 chr1 26283583 26283629 -170911803 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 785 327 314 26 19 chr1 26283711 26283867 -170911565 - L1MA5A LINE L1 -430 5867 5711 4 785 24 0 0 0 chr1 26285683 26285707 -170909725 + AT_rich Low_complexity Low_complexity 1 24 0 4 785 438 20 0 0 chr1 26285811 26285862 -170909570 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 785 3298 185 81 3 chr1 26286146 26286787 -170908645 - RLTR17 LTR ERVK -1 691 1 4 785 430 359 57 33 chr1 26286885 26287130 -170908302 + MLT1D LTR MaLR 251 501 -4 4 785 207 232 0 0 chr1 26287352 26287408 -170908024 + C-rich Low_complexity Low_complexity 2 57 0 4 785 213 239 0 102 chr1 26287433 26287531 -170907901 + CT-rich Low_complexity Low_complexity 3 90 0 4 785 762 206 134 0 chr1 26287847 26288070 -170907362 + Lx9 LINE L1 7386 7638 -6 4 785 481 305 58 21 chr1 26288335 26288576 -170906856 + Lx8 LINE L1 6854 7103 -370 4 785 1924 237 25 55 chr1 26288576 26289135 -170906297 - RMER19C LTR ERVK 0 611 70 4 785 1955 129 46 44 chr1 26289293 26289659 -170905773 + IAPLTR1_Mm LTR ERVK 1 367 0 4 785 293 306 84 113 chr1 26289723 26290007 -170905425 + RMER2 LTR ERV1 292 567 0 4 785 524 180 10 10 chr1 26290009 26290110 -170905322 - RMER19C LTR ERVK -510 101 1 4 785 701 291 58 47 chr1 26290120 26290220 -170905212 + Lx8 LINE L1 7127 7228 -245 4 785 267 103 0 0 chr1 26290220 26290259 -170905173 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 785 701 291 58 47 chr1 26290259 26290500 -170904932 + Lx8 LINE L1 7229 7472 -1 4 785 360 267 24 6 chr1 26290556 26290722 -170904710 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 4 785 309 207 78 30 chr1 26291173 26291311 -170904121 + L1MA9 LINE L1 5786 5925 -264 4 785 232 170 18 16 chr1 26291520 26291601 -170903831 + L1MA9 LINE L1 6152 6230 -82 4 785 219 36 0 0 chr1 26291677 26291705 -170903727 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 785 331 288 37 74 chr1 26291941 26292076 -170903356 - RMER10B LTR ERVL 0 398 269 4 785 21 0 0 0 chr1 26293440 26293461 -170901971 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 22 56 0 0 chr1 26293644 26293680 -170901752 + AT_rich Low_complexity Low_complexity 1 36 0 4 785 337 310 107 0 chr1 26293701 26293821 -170901611 + B1_Mur1 SINE Alu 7 140 -9 4 785 266 293 54 54 chr1 26293854 26293984 -170901448 - RMER12 LTR ERVK -467 855 726 4 785 873 201 4 50 chr1 26295041 26295282 -170900150 + L1_Mur2 LINE L1 4200 4429 -1448 4 785 629 229 55 110 chr1 26295306 26295461 -170899971 - URR1B DNA MER1_type -1 224 90 4 785 1123 81 0 0 chr1 26295461 26295609 -170899823 - B1_Mus1 SINE Alu 0 148 1 4 785 629 229 55 110 chr1 26295609 26295689 -170899743 - URR1B DNA MER1_type -136 89 2 4 785 304 302 51 45 chr1 26295689 26296022 -170899410 - L1M3 LINE L1 -886 5254 4920 4 785 909 42 0 0 chr1 26296231 26296349 -170899083 + (CA)n Simple_repeat Simple_repeat 2 119 0 4 785 1676 321 70 47 chr1 26296378 26297300 -170898132 - Lx7 LINE L1 -375 7321 6378 4 785 24 0 0 0 chr1 26297534 26297558 -170897874 + AT_rich Low_complexity Low_complexity 1 24 0 4 785 22 0 0 0 chr1 26297730 26297752 -170897680 + AT_rich Low_complexity Low_complexity 1 22 0 4 785 22 0 0 0 chr1 26297860 26297882 -170897550 + AT_rich Low_complexity Low_complexity 1 22 0 4 785 4748 121 7 3 chr1 26297893 26298624 -170896808 - L1_Mus3 LINE L1 0 6638 5905 4 785 813 247 60 127 chr1 26298923 26299308 -170896124 - MTE2a LTR MaLR -18 361 3 4 785 527 312 7 28 chr1 26299617 26299759 -170895673 + RSINE1 SINE B4 2 140 -25 4 785 711 81 0 0 chr1 26303136 26303235 -170892197 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 785 210 37 0 0 chr1 26303280 26303307 -170892125 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 785 420 143 70 20 chr1 26303307 26303407 -170892025 - PB1D9 SINE Alu -1 146 42 4 785 224 0 0 157 chr1 26303410 26303518 -170891914 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 4 785 372 102 0 33 chr1 26303519 26303580 -170891852 - B1_Mus2 SINE Alu -88 59 1 4 785 35 41 0 0 chr1 26303883 26303932 -170891500 + AT_rich Low_complexity Low_complexity 1 49 0 4 785 461 17 17 0 chr1 26304199 26304257 -170891175 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 785 733 169 13 7 chr1 26304703 26304858 -170890574 + GA-rich Low_complexity Low_complexity 4 159 0 4 785 395 296 180 0 chr1 26305131 26305303 -170890129 - MLT2C1 LTR ERVL -194 203 1 4 785 864 189 0 0 chr1 26306059 26306202 -170889230 - RLTR19 LTR ERVK -356 143 1 4 785 1868 192 122 16 chr1 26306202 26306704 -170888728 + BGLII LTR ERVK 132 686 -4 4 785 907 227 5 49 chr1 26306737 26306941 -170888491 + RMER3D-int LTR ERVK 1 195 -2982 4 785 206 118 0 0 chr1 26307447 26307481 -170887951 + (T)n Simple_repeat Simple_repeat 1 34 0 4 785 1093 77 28 0 chr1 26307481 26307624 -170887808 - B1_Mm SINE Alu 0 147 1 4 785 256 48 23 23 chr1 26307627 26307670 -170887762 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 785 3001 98 5 0 chr1 26307922 26308341 -170887091 + BGLII LTR ERVK 1 421 0 4 785 2457 201 68 166 chr1 26308438 26309577 -170885855 + RMER3D-int LTR ERVK 652 1679 -1163 4 785 2934 217 57 46 chr1 26309563 26310503 -170884929 + RMER3D-int LTR ERVK 1891 2841 -1 4 785 3113 77 12 7 chr1 26310504 26310923 -170884509 + BGLII LTR ERVK 1 421 0 4 785 26 0 0 0 chr1 26312813 26312839 -170882593 + AT_rich Low_complexity Low_complexity 1 26 0 4 785 228 67 0 0 chr1 26313739 26313769 -170881663 + (T)n Simple_repeat Simple_repeat 1 30 0 4 785 3932 166 13 10 chr1 26313822 26314528 -170880904 - Lx2 LINE L1 -7 6990 6283 4 785 476 364 28 17 chr1 26314620 26314796 -170880636 + LTR33A LTR ERVL 338 515 -5 4 785 1781 267 35 21 chr1 26315253 26315773 -170879659 + L1_Mus4 LINE L1 557 1083 -5574 4 785 13450 7 0 0 chr1 26315769 26317978 -170877454 - L1Md_A LINE L1 0 6582 4374 4 785 9645 189 14 129 chr1 26317967 26319309 -170876123 + L1_Mus4 LINE L1 1056 2341 -3539 4 785 830 140 73 0 chr1 26319309 26319445 -170875987 - B1_Mm SINE Alu -1 146 1 4 785 11608 180 16 90 chr1 26319445 26319850 -170875582 + L1_Mus4 LINE L1 2342 2720 -3916 4 785 780 170 42 125 chr1 26319850 26320269 -170875163 + RLTR6_Mm LTR ERV1 1 447 0 4 785 11608 180 16 90 chr1 26320269 26324452 -170870980 + L1_Mus4 LINE L1 2721 6636 0 4 785 23 33 0 0 chr1 26324511 26324541 -170870891 + AT_rich Low_complexity Low_complexity 1 30 0 4 785 7124 153 56 23 chr1 26324665 26324806 -170870626 + Lx2 LINE L1 5658 5794 -1203 4 785 1013 135 0 0 chr1 26324806 26324954 -170870478 + B1_Mus1 SINE Alu 1 148 0 4 785 7124 153 56 23 chr1 26324954 26326109 -170869323 + Lx2 LINE L1 5795 6997 0 4 785 1192 60 0 24 chr1 26326121 26326291 -170869141 + B2_Mm2 SINE B2 3 168 -27 4 785 7914 51 7 0 chr1 26326297 26327774 -170867658 - L1Md_F3 LINE L1 0 6584 5125 4 785 1871 66 0 4 chr1 26327772 26328016 -170867416 + L1Md_F3 LINE L1 4885 5127 -756 4 785 483 100 0 0 chr1 26328017 26328087 -170867345 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 785 3187 101 5 0 chr1 26328093 26328562 -170866870 - Lx6 LINE L1 -1719 5741 5269 4 785 259 44 44 0 chr1 26328564 26328609 -170866823 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 785 7791 121 16 46 chr1 26328641 26329963 -170865469 + Lx3_Mus LINE L1 5712 6993 -16 4 785 23 33 0 0 chr1 26330045 26330075 -170865357 + AT_rich Low_complexity Low_complexity 1 30 0 4 785 255 303 119 0 chr1 26330310 26330419 -170865013 - MIRb SINE MIR -91 177 56 4 785 21 0 0 0 chr1 26332549 26332570 -170862862 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 701 157 14 7 chr1 26332655 26332796 -170862636 - L1_Mus3 LINE L1 -6 6632 6491 4 785 1017 300 51 20 chr1 26333404 26333758 -170861674 - MTEb LTR MaLR -2 377 13 4 785 264 313 210 45 chr1 26334544 26334768 -170860664 + RMER15 LTR ERVL 275 535 -40 4 785 861 310 90 56 chr1 26335064 26335454 -170859978 + MTD LTR MaLR 17 419 0 4 785 270 0 0 0 chr1 26335680 26335710 -170859722 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 785 652 225 8 0 chr1 26335725 26335854 -170859578 + B1_Mm SINE Alu 12 141 -6 4 785 358 20 39 0 chr1 26335861 26335912 -170859520 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 785 21 57 0 0 chr1 26335986 26336021 -170859411 + AT_rich Low_complexity Low_complexity 1 35 0 4 785 246 132 0 0 chr1 26336129 26336182 -170859250 + (TTG)n Simple_repeat Simple_repeat 2 54 0 4 785 825 182 14 0 chr1 26336192 26336340 -170859092 - B1_Mur4 SINE Alu 0 150 1 4 785 227 274 55 24 chr1 26336617 26336744 -170858688 + Lx7 LINE L1 7285 7415 -281 4 785 1196 258 38 19 chr1 26336879 26337273 -170858159 + L1_Mur3 LINE L1 17 643 -7085 4 785 991 186 73 10 chr1 26337267 26337543 -170857889 + L1_Mur3 LINE L1 1088 1374 -4506 4 785 1138 103 11 17 chr1 26337751 26337928 -170857504 - B2_Mm2 SINE B2 -19 176 1 4 785 23 0 0 0 chr1 26339370 26339393 -170856039 + AT_rich Low_complexity Low_complexity 1 23 0 4 785 1102 219 23 30 chr1 26341311 26341543 -170853889 - Lx4A LINE L1 -436 6622 6392 4 785 1357 128 59 24 chr1 26341543 26341798 -170853634 - L1_Mus4 LINE L1 0 6636 6373 4 785 1102 219 23 30 chr1 26341798 26341829 -170853603 - Lx4A LINE L1 -667 6391 6361 4 785 2136 202 19 5 chr1 26341829 26342251 -170853181 + Lx4A LINE L1 6624 7051 -7 4 785 342 0 0 0 chr1 26342251 26342289 -170853143 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 4 785 285 302 37 30 chr1 26343187 26343351 -170852081 - MER96B DNA hAT -246 171 7 4 785 867 128 0 0 chr1 26343570 26343711 -170851721 + (TTCC)n Simple_repeat Simple_repeat 1 141 0 5 785 287 130 19 0 chr1 26343712 26343766 -170851666 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 785 278 286 13 0 chr1 26343806 26343883 -170851549 + CT-rich Low_complexity Low_complexity 4 81 0 5 786 2865 85 0 25 chr1 26345672 26346080 -170849352 + L1Md_F2 LINE L1 6173 6570 -12 5 786 22 0 0 0 chr1 26348102 26348124 -170847308 + AT_rich Low_complexity Low_complexity 1 22 0 5 786 209 213 0 0 chr1 26349319 26349366 -170846066 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 786 960 242 112 24 chr1 26350527 26350777 -170844655 - ORR1C1 LTR MaLR -2 382 111 5 786 2247 281 105 46 chr1 26350776 26351616 -170843816 - ORR1C1-int LTR MaLR -479 891 3 5 786 1275 198 119 57 chr1 26351616 26351970 -170843462 - ORR1C1 LTR MaLR -2 376 1 5 786 570 274 35 59 chr1 26351984 26352186 -170843246 + B3A SINE B2 1 197 -1 5 786 348 312 64 0 chr1 26353343 26353452 -170841980 - RMER15 LTR ERVL -55 520 405 5 786 360 0 0 0 chr1 26354075 26354115 -170841317 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 786 473 0 18 0 chr1 26354614 26354671 -170840761 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 786 618 316 25 35 chr1 26356099 26356299 -170839133 + B3A SINE B2 1 198 0 5 786 542 54 14 0 chr1 26356728 26356802 -170838630 + (GAGAA)n Simple_repeat Simple_repeat 4 78 0 5 786 2179 334 59 14 chr1 26357118 26358207 -170837225 - Lx8 LINE L1 -77 7396 6259 5 786 309 297 0 0 chr1 26358280 26358371 -170837061 - L1_Mur3 LINE L1 -1994 3886 3796 5 786 1615 173 32 3 chr1 26358371 26358685 -170836747 - Lx4A LINE L1 -762 6296 5974 5 786 372 287 124 26 chr1 26358688 26358881 -170836551 - L1M2 LINE L1 -2859 3284 3073 5 786 441 0 0 0 chr1 26358881 26358930 -170836502 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 786 21 36 0 0 chr1 26359356 26359384 -170836048 + AT_rich Low_complexity Low_complexity 1 28 0 5 786 573 180 0 0 chr1 26359584 26359712 -170835720 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 786 4019 300 54 39 chr1 26359725 26360822 -170834610 - Lx7 LINE L1 -397 7299 6200 5 786 441 0 0 0 chr1 26360822 26360871 -170834561 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 786 4019 296 49 59 chr1 26360871 26361529 -170833903 - Lx7 LINE L1 -1497 6199 5512 5 786 22 0 0 0 chr1 26362981 26363003 -170832429 + AT_rich Low_complexity Low_complexity 1 22 0 5 786 485 256 149 17 chr1 26364920 26365095 -170830337 + MIRb SINE MIR 68 265 -3 5 786 252 0 0 0 chr1 26365154 26365182 -170830250 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 786 272 264 95 58 chr1 26367115 26367252 -170828180 - RLTR22_Mur LTR ERVK -481 1367 1226 5 786 1097 190 0 11 chr1 26367252 26367438 -170827994 + L1VL4 LINE L1 27 210 -6092 5 786 228 223 39 87 chr1 26367448 26367551 -170827881 - MT2B2 LTR ERVL -432 152 55 5 786 22635 172 27 20 chr1 26367552 26372808 -170822624 + Lx LINE L1 680 5954 -700 5 786 5184 130 20 12 chr1 26372799 26373774 -170821658 + Lx3A LINE L1 5122 6131 -869 5 786 6637 112 42 3 chr1 26373774 26374819 -170820613 + Lx3_Mus LINE L1 5913 6998 -11 5 786 1619 218 93 15 chr1 26374819 26374844 -170820588 + Lx3A LINE L1 6132 6154 -846 5 786 540 278 14 14 chr1 26374989 26375135 -170820297 + ORR1D2 LTR MaLR 1 146 -224 5 786 270 0 0 0 chr1 26376059 26376089 -170819343 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 786 21 95 0 0 chr1 26376249 26376312 -170819120 + AT_rich Low_complexity Low_complexity 1 63 0 5 786 1046 255 93 122 chr1 26376613 26376699 -170818733 - MT2A LTR ERVL 0 533 462 5 786 528 16 0 0 chr1 26376699 26376760 -170818672 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 786 1046 255 93 122 chr1 26376760 26377222 -170818210 - MT2A LTR ERVL -72 461 1 5 786 704 364 22 11 chr1 26377356 26377631 -170817801 - MLT1F2 LTR MaLR -269 291 14 5 786 2935 125 136 15 chr1 26377815 26378336 -170817096 + MT2B2 LTR ERVL 1 584 0 5 786 26 50 0 0 chr1 26378448 26378488 -170816944 + AT_rich Low_complexity Low_complexity 1 40 0 5 786 51 31 0 0 chr1 26379014 26379079 -170816353 + AT_rich Low_complexity Low_complexity 1 65 0 5 786 385 258 182 0 chr1 26379079 26379238 -170816194 + Lx9 LINE L1 7424 7611 -33 5 786 304 357 8 16 chr1 26379966 26380094 -170815338 + MER94 DNA AcHobo 6 132 -2 5 786 1190 143 0 82 chr1 26380470 26380713 -170814719 + Lx3B LINE L1 6751 6973 0 5 786 24 32 0 0 chr1 26380715 26380746 -170814686 + AT_rich Low_complexity Low_complexity 1 31 0 5 786 300 27 0 0 chr1 26382649 26382686 -170812746 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 786 580 309 104 5 chr1 26382938 26383130 -170812302 + B3 SINE B2 2 212 -4 5 786 6885 71 0 14 chr1 26383130 26384053 -170811379 + L1Md_F2 LINE L1 4677 5586 -297 5 786 7439 68 14 15 chr1 26384053 26385049 -170810383 + L1Md_F2 LINE L1 5587 6581 -1 5 786 675 112 0 0 chr1 26385117 26385233 -170810199 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 786 387 319 112 21 chr1 26386232 26386472 -170808960 - L1MD LINE L1 -2384 5611 5350 5 786 219 36 0 0 chr1 26386482 26386510 -170808922 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 786 389 328 23 0 chr1 26386991 26387119 -170808313 + B1F SINE Alu 13 143 -6 5 786 336 48 0 0 chr1 26387135 26387177 -170808255 + (GGA)n Simple_repeat Simple_repeat 2 43 0 5 786 679 292 18 69 chr1 26387574 26387791 -170807641 - MTE2b LTR MaLR -2 377 172 5 786 1051 328 13 66 chr1 26389046 26389438 -170805994 + MTE2a LTR MaLR 1 371 -8 5 786 2032 104 0 64 chr1 26389473 26389801 -170805631 + L1_Mus2 LINE L1 6260 6566 0 5 786 4579 114 43 16 chr1 26389954 26389969 -170805463 - RMER17D2 LTR ERVK 0 809 795 5 786 431 0 0 0 chr1 26389969 26390024 -170805408 + L1Md_T LINE L1 6526 6580 -2 5 786 4579 114 43 16 chr1 26390024 26390796 -170804636 - RMER17D2 LTR ERVK -15 794 1 5 786 1141 62 0 7 chr1 26391785 26391932 -170803500 - B1_Mus2 SINE Alu -1 146 1 5 786 501 58 0 0 chr1 26393681 26393750 -170801682 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 786 423 0 0 0 chr1 26393750 26393796 -170801636 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 786 430 366 36 25 chr1 26394554 26394750 -170800682 + B3A SINE B2 1 198 0 5 786 21 0 0 0 chr1 26394761 26394782 -170800650 + AT_rich Low_complexity Low_complexity 1 21 0 5 786 929 134 23 23 chr1 26394831 26395006 -170800426 + L1_Mus3 LINE L1 6438 6612 -26 5 786 240 59 0 0 chr1 26395014 26395048 -170800384 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 5 786 2926 271 60 48 chr1 26395238 26396268 -170799164 + Lx9 LINE L1 6594 7636 -8 5 786 782 121 32 0 chr1 26396448 26396572 -170798860 - B2_Mm1t SINE B2 -64 129 2 5 786 247 51 0 0 chr1 26396611 26396650 -170798782 - L1_Mus2 LINE L1 0 6566 6528 5 786 2309 132 22 22 chr1 26396650 26397054 -170798378 - RLTR9E LTR ERVK 0 409 6 5 786 513 92 0 26 chr1 26397058 26397136 -170798296 - ETnERV2-int LTR ERVK 0 7406 7331 5 786 2668 150 40 48 chr1 26397351 26397870 -170797562 - ETnERV2-int LTR ERVK -984 6422 5908 5 786 21188 111 16 19 chr1 26397870 26398246 -170797186 - MusHAL1 LINE L1 -1301 4582 4206 5 786 279 0 0 0 chr1 26398246 26398277 -170797155 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 786 21188 118 15 29 chr1 26398277 26401815 -170793617 - MusHAL1 LINE L1 -1678 4205 725 5 786 437 276 14 7 chr1 26401817 26401963 -170793469 - MusHAL1 LINE L1 -5807 809 663 5 786 510 46 0 0 chr1 26402834 26402899 -170792533 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 786 303 253 108 0 chr1 26403190 26403273 -170792159 + Lx8 LINE L1 6600 6691 -782 5 786 22 80 0 0 chr1 26403629 26403679 -170791753 + AT_rich Low_complexity Low_complexity 1 50 0 5 786 201 147 0 0 chr1 26405550 26405584 -170789848 + (T)n Simple_repeat Simple_repeat 1 34 0 5 786 2744 12 95 6 chr1 26406029 26406366 -170789066 - IAPLTR1_Mm LTR ERVK 0 367 1 5 786 28912 19 1 1 chr1 26406366 26409637 -170785795 - IAPEz-int LTR ERVK 0 6481 3210 5 786 8010 96 63 14 chr1 26409636 26410881 -170784551 - IAPEz-int LTR ERVK -5168 1313 8 5 786 2732 15 95 6 chr1 26410881 26411218 -170784214 - IAPLTR1_Mm LTR ERVK 0 367 1 5 786 1042 102 0 13 chr1 26412016 26412165 -170783267 - B1_Mus1 SINE Alu 0 148 2 5 786 398 307 14 21 chr1 26412435 26412578 -170782854 - RSINE1 SINE B4 -21 144 3 5 786 333 118 0 0 chr1 26412599 26412650 -170782782 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 786 275 371 19 19 chr1 26414594 26414701 -170780731 - PB1D10 SINE Alu -10 107 1 5 786 322 262 138 72 chr1 26414850 26415002 -170780430 + B3A SINE B2 1 162 -31 5 786 1241 65 6 0 chr1 26415351 26415520 -170779912 - L1Md_A LINE L1 0 6582 6413 5 786 580 259 68 7 chr1 26415526 26415674 -170779758 - RSINE1 SINE B4 -6 159 3 5 786 33 25 0 0 chr1 26415960 26416000 -170779432 + AT_rich Low_complexity Low_complexity 1 40 0 5 786 541 246 102 21 chr1 26416000 26416187 -170779245 - Lx6 LINE L1 -43 7417 7216 5 786 1674 117 0 19 chr1 26416331 26416601 -170778831 - Lx2 LINE L1 -1 6996 6732 5 786 473 0 18 0 chr1 26416738 26416795 -170778637 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 786 261 163 0 0 chr1 26417202 26417251 -170778181 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 786 2535 218 64 16 chr1 26417436 26418260 -170777172 + Lx3C LINE L1 6083 6990 -10 5 786 2140 116 21 0 chr1 26418611 26418939 -170776493 - Lx2 LINE L1 -2 6995 6661 5 786 26 0 0 0 chr1 26419725 26419751 -170775681 + AT_rich Low_complexity Low_complexity 1 26 0 5 786 23 33 0 0 chr1 26419790 26419820 -170775612 + AT_rich Low_complexity Low_complexity 1 30 0 5 786 1763 202 24 3 chr1 26420737 26421110 -170774322 - Lx4A LINE L1 -710 6348 5968 5 786 1242 121 35 0 chr1 26421471 26421670 -170773762 - Lx4A LINE L1 -1077 5981 5776 5 786 1541 197 33 3 chr1 26421713 26422014 -170773418 + Lx4A LINE L1 6749 7058 0 5 786 570 147 19 25 chr1 26422060 26422221 -170773211 + (CAGAGA)n Simple_repeat Simple_repeat 2 161 0 5 786 251 350 75 0 chr1 26422296 26422416 -170773016 - MLT1A1 LTR MaLR -278 130 2 5 786 756 310 73 35 chr1 26422685 26422832 -170772600 - L1MA4A LINE L1 -389 5914 5770 5 786 3417 117 15 6 chr1 26422832 26423358 -170772074 - L1_Mus4 LINE L1 -1 6635 6105 5 786 756 310 80 34 chr1 26423358 26423798 -170771634 - L1MA4A LINE L1 -531 5769 5285 5 786 294 73 0 0 chr1 26424067 26424108 -170771324 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 786 284 111 19 0 chr1 26424589 26424643 -170770789 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 786 321 280 184 0 chr1 26424676 26424801 -170770631 + MLT1D LTR MaLR 354 501 -4 5 786 4210 76 22 0 chr1 26425758 26426353 -170769079 - L1Md_F2 LINE L1 -1664 4219 3612 6 786 11948 95 13 28 chr1 26426352 26428719 -170766713 + L1Md_F2 LINE L1 4236 6558 -24 6 786 5886 73 18 8 chr1 26428719 26429516 -170765916 + L1Md_F2 LINE L1 5778 6582 0 6 786 243 340 59 0 chr1 26429520 26429614 -170765818 - B1F1 SINE Alu -48 101 3 6 786 5953 264 40 23 chr1 26429777 26431389 -170764043 - Lx6 LINE L1 -29 7431 5792 6 786 207 0 0 0 chr1 26431396 26431419 -170764013 + (CAT)n Simple_repeat Simple_repeat 2 24 0 6 786 4292 140 29 0 chr1 26431432 26432126 -170763306 - Lx3B LINE L1 -3 6970 6257 6 786 1002 252 29 19 chr1 26432126 26432434 -170762998 - L1_Mur3 LINE L1 -903 4977 4667 6 786 1967 45 0 12 chr1 26432434 26432684 -170762748 - L1Md_F2 LINE L1 0 6582 6336 6 786 1445 50 0 0 chr1 26432684 26432863 -170762569 + L1Md_F2 LINE L1 6164 6342 -240 6 786 1726 191 16 5 chr1 26432859 26433243 -170762189 - L1_Mur3 LINE L1 -1203 4677 4290 6 786 1819 267 116 82 chr1 26433255 26434097 -170761335 - L1_Mur3 LINE L1 -4339 1538 724 6 786 407 35 18 0 chr1 26434097 26434154 -170761278 + (TTTTG)n Simple_repeat Simple_repeat 4 61 0 6 786 1819 296 112 108 chr1 26434154 26434395 -170761037 - L1_Mur3 LINE L1 -7005 723 428 6 786 2721 97 5 2 chr1 26434395 26434789 -170760643 + L1_Mus3 LINE L1 6244 6638 0 6 786 1819 307 97 94 chr1 26434789 26435310 -170760122 - L1_Mur3 LINE L1 -7048 680 18 6 786 7182 97 18 5 chr1 26435310 26436320 -170759112 + RLTR13D5 LTR ERVK 1 1023 0 6 786 946 351 35 36 chr1 26436320 26436378 -170759054 - L1_Mur3 LINE L1 -7571 157 103 6 786 2448 318 69 25 chr1 26436946 26437976 -170757456 + Lx8 LINE L1 6357 7431 -42 6 786 919 180 16 16 chr1 26438041 26438227 -170757205 - B2_Mm2 SINE B2 -8 187 2 6 786 507 289 32 12 chr1 26438911 26439196 -170756236 + L1M4c LINE L1 1516 1847 -5161 6 786 384 77 0 0 chr1 26439546 26439598 -170755834 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 786 3723 107 48 0 chr1 26439600 26440144 -170755288 - L1_Mus3 LINE L1 -12 6626 6057 6 786 200 151 81 14 chr1 26440226 26440300 -170755132 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 786 321 218 153 34 chr1 26440739 26440870 -170754562 + Lx9 LINE L1 7378 7534 -110 6 786 3423 58 2 0 chr1 26440870 26441299 -170754133 + L1Md_F3 LINE L1 6147 6576 -8 6 786 321 218 153 34 chr1 26441299 26441343 -170754089 + Lx9 LINE L1 7535 7574 -70 6 786 316 310 78 52 chr1 26441583 26441852 -170753580 + L1M4c LINE L1 3490 3765 -3241 6 786 896 51 8 0 chr1 26442022 26442140 -170753292 + (TTC)n Simple_repeat Simple_repeat 2 120 0 6 786 1083 79 0 0 chr1 26442143 26442283 -170753149 - B1_Mus2 SINE Alu -7 140 1 6 786 491 248 0 0 chr1 26442487 26442588 -170752844 + B1F2 SINE Alu 34 134 -15 6 786 377 184 18 18 chr1 26442598 26442709 -170752723 + GA-rich Low_complexity Low_complexity 2 112 0 6 786 231 121 75 15 chr1 26442899 26442985 -170752447 + (CAAAC)n Simple_repeat Simple_repeat 1 91 0 6 786 22 0 0 0 chr1 26443182 26443204 -170752228 + AT_rich Low_complexity Low_complexity 1 22 0 6 786 261 324 63 30 chr1 26443251 26443582 -170751850 + L1M4c LINE L1 4496 4837 -2169 6 786 361 341 102 14 chr1 26443647 26444001 -170751431 + L1MB3 LINE L1 5484 5868 -315 6 786 32 0 0 0 chr1 26444297 26444329 -170751103 + AT_rich Low_complexity Low_complexity 1 32 0 6 786 1609 93 40 8 chr1 26445756 26446004 -170749428 - L1_Mus3 LINE L1 0 6638 6383 6 786 201 147 0 0 chr1 26447560 26447594 -170747838 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 786 259 272 49 12 chr1 26448267 26448349 -170747083 + ORR1D1 LTR MaLR 1 85 -285 6 786 468 244 37 22 chr1 26448440 26448574 -170746858 + ORR1D1 LTR MaLR 233 368 -6 6 786 730 58 19 0 chr1 26450125 26450229 -170745203 + (GAA)n Simple_repeat Simple_repeat 3 108 0 6 786 1151 299 71 9 chr1 26450252 26450589 -170744843 - MTEb LTR MaLR -21 358 1 6 786 1144 68 7 0 chr1 26451843 26451989 -170743443 + B1_Mus2 SINE Alu 1 147 0 6 786 21 0 0 0 chr1 26453695 26453716 -170741716 + AT_rich Low_complexity Low_complexity 1 21 0 6 786 396 0 0 0 chr1 26454563 26454607 -170740825 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 786 333 0 0 0 chr1 26454607 26454644 -170740788 + (CCA)n Simple_repeat Simple_repeat 2 38 0 6 786 461 291 79 16 chr1 26454699 26454917 -170740515 + ORR1D1 LTR MaLR 121 381 -13 6 786 274 330 9 13 chr1 26455056 26455200 -170740232 - Lx8 LINE L1 -275 7369 7099 6 786 239 279 28 46 chr1 26455228 26455337 -170740095 + Lx9 LINE L1 7051 7157 -487 6 786 243 213 15 76 chr1 26455483 26455615 -170739817 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 6 786 341 307 0 0 chr1 26455720 26455795 -170739637 - ID4 SINE ID -3 80 6 6 786 25 31 0 0 chr1 26455913 26455945 -170739487 + AT_rich Low_complexity Low_complexity 1 32 0 6 786 1436 287 65 39 chr1 26455949 26456485 -170738947 - Lx8 LINE L1 -356 7117 6568 6 786 21 0 0 0 chr1 26457031 26457052 -170738380 + AT_rich Low_complexity Low_complexity 1 21 0 6 786 725 256 46 10 chr1 26457192 26457385 -170738047 - ORR1C2 LTR MaLR 0 384 184 6 786 1044 114 0 0 chr1 26457385 26457561 -170737871 + (GA)n Simple_repeat Simple_repeat 2 177 0 6 786 229 256 146 34 chr1 26457580 26457669 -170737763 - ORR1C2 LTR MaLR -271 107 9 6 786 21 0 0 0 chr1 26457724 26457745 -170737687 + AT_rich Low_complexity Low_complexity 1 21 0 6 786 216 0 0 0 chr1 26457766 26457790 -170737642 + (T)n Simple_repeat Simple_repeat 1 24 0 6 786 1175 61 0 0 chr1 26457790 26457938 -170737494 - B1_Mus1 SINE Alu 0 148 1 6 786 5916 204 86 58 chr1 26458140 26460611 -170734821 - L1_Mur3 LINE L1 -3072 2808 276 6 786 503 16 0 15 chr1 26460613 26460678 -170734754 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 6 786 1277 266 29 132 chr1 26460862 26461317 -170734115 - MTC LTR MaLR -2 419 12 6 786 4644 248 146 24 chr1 26463195 26464020 -170731412 + Lx6 LINE L1 5739 6681 -779 6 786 5087 133 92 5 chr1 26464020 26464901 -170730531 - RMER17B LTR ERVK 0 958 1 6 786 4644 248 146 24 chr1 26464901 26465590 -170729842 + Lx6 LINE L1 6682 7437 -23 6 786 327 224 0 0 chr1 26465585 26465652 -170729780 - Lx7 LINE L1 -791 6905 6839 6 786 234 330 35 0 chr1 26466191 26466294 -170729138 + PB1D10 SINE Alu 10 118 -2 6 786 373 326 45 55 chr1 26466342 26466631 -170728801 - Lx8 LINE L1 -9 7464 7179 6 786 963 60 98 0 chr1 26466766 26466899 -170728533 + B1_Mm SINE Alu 1 146 -1 6 786 1422 35 0 0 chr1 26467478 26467650 -170727782 + (TCTCCC)n Simple_repeat Simple_repeat 4 175 0 6 786 21 0 0 0 chr1 26467947 26467968 -170727464 + AT_rich Low_complexity Low_complexity 1 21 0 6 786 282 125 0 0 chr1 26468775 26468823 -170726609 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 786 552 68 0 0 chr1 26469604 26469677 -170725755 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 6 786 527 196 0 6 chr1 26469697 26469861 -170725571 + GA-rich Low_complexity Low_complexity 2 164 0 6 786 1444 242 69 104 chr1 26469861 26470273 -170725159 - MT2A LTR ERVL -71 462 59 6 786 1134 70 0 0 chr1 26470273 26470416 -170725016 - B1_Mus2 SINE Alu 0 147 5 6 786 1444 242 69 104 chr1 26470416 26470482 -170724950 - MT2A LTR ERVL -475 58 1 6 786 630 219 0 0 chr1 26470735 26470849 -170724583 - Lx2 LINE L1 -115 6882 6769 6 786 2908 24 3 0 chr1 26470849 26471185 -170724247 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 98 55856 20 15 4 chr1 26471185 26477590 -170717842 + IAPEz-int LTR ERVK 8 6481 0 6 787 2947 24 0 0 chr1 26477590 26477927 -170717505 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 787 1070 159 6 0 chr1 26477927 26478097 -170717335 - Lx2 LINE L1 -223 6774 6604 6 787 441 0 0 0 chr1 26478166 26478215 -170717217 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 787 954 302 103 16 chr1 26478351 26478798 -170716634 - Lx8 LINE L1 0 7473 6988 6 787 1217 198 104 4 chr1 26478901 26479160 -170716272 - MTC LTR MaLR -12 409 125 6 787 1015 208 155 40 chr1 26479155 26479451 -170715981 - RMER10B LTR ERVL -68 330 1 6 787 3249 51 2 0 chr1 26479519 26479914 -170715518 - MTA_Mm LTR MaLR 0 396 1 6 787 8300 138 25 40 chr1 26480821 26482723 -170712709 + Lx2A LINE L1 5130 7006 -2 6 787 324 169 108 0 chr1 26482744 26482809 -170712623 + MTC LTR MaLR 3 74 -347 6 787 510 125 0 0 chr1 26482812 26482892 -170712540 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 787 459 48 0 0 chr1 26484748 26484810 -170710622 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 787 1488 144 19 4 chr1 26484956 26485221 -170710211 - L1_Mm LINE L1 -1902 3981 3713 6 787 264 91 0 0 chr1 26485224 26485268 -170710164 + (T)n Simple_repeat Simple_repeat 1 44 0 6 787 29208 4 127 0 chr1 26485270 26489609 -170705823 - L1Md_A LINE L1 0 6582 1644 6 787 5202 118 38 11 chr1 26489609 26490475 -170704957 - L1_Mm LINE L1 -2160 3723 2835 6 787 665 133 22 7 chr1 26490475 26490611 -170704821 + L1_Mus3 LINE L1 6500 6637 -1 6 787 8141 47 1 4 chr1 26490683 26491717 -170703715 - L1Md_F2 LINE L1 -1 6581 5551 6 787 1980 41 0 4 chr1 26491717 26491962 -170703470 + L1Md_F3 LINE L1 6327 6570 -14 6 787 368 387 0 0 chr1 26492040 26492159 -170703273 + B4A SINE B4 1 119 -173 6 787 556 286 30 0 chr1 26492196 26492329 -170703103 + RSINE1 SINE B4 9 145 -20 6 787 204 40 0 0 chr1 26492340 26492365 -170703067 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 787 468 0 0 0 chr1 26492485 26492537 -170702895 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 787 26 0 0 0 chr1 26492907 26492933 -170702499 + AT_rich Low_complexity Low_complexity 1 26 0 6 787 262 342 51 70 chr1 26493624 26493781 -170701651 - MLT1I LTR MaLR -67 344 191 6 787 299 342 25 31 chr1 26495223 26495383 -170700049 - MIRb SINE MIR -15 253 95 6 787 508 92 45 9 chr1 26495540 26495650 -170699782 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 6 787 540 0 0 0 chr1 26496084 26496144 -170699288 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 787 723 104 28 23 chr1 26496715 26496892 -170698540 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 787 403 86 0 0 chr1 26496895 26496953 -170698479 + MERVL-int LTR ERVL 1 58 -5427 6 787 2674 57 70 5 chr1 26496953 26497145 -170698287 + MT2C_Mm LTR ERVL 83 298 -177 6 787 246 32 0 0 chr1 26497145 26497176 -170698256 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 787 2674 57 70 5 chr1 26497176 26497352 -170698080 + MT2C_Mm LTR ERVL 299 475 0 6 787 270 0 0 0 chr1 26497359 26497389 -170698043 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 787 12898 29 0 0 chr1 26497799 26500000 -170695432 - L1Md_A LINE L1 0 6582 4382 6 787 26514 31 1 9 chr1 26500000 26503964 -170691468 - L1Md_A LINE L1 -1502 4381 459 1 787 560 273 79 7 chr1 26504144 26504284 -170691148 - B1_Mur4 SINE Alu 0 150 1 2 787 260 315 29 69 chr1 26504284 26504363 -170691069 - RLTR25B LTR ERVK -621 407 336 3 787 21 100 0 0 chr1 26504365 26504435 -170690997 + AT_rich Low_complexity Low_complexity 1 70 0 4 787 27 49 0 0 chr1 26504501 26504542 -170690890 + AT_rich Low_complexity Low_complexity 1 41 0 5 787 26 50 0 0 chr1 26504600 26504640 -170690792 + AT_rich Low_complexity Low_complexity 1 40 0 6 787 665 321 50 38 chr1 26504651 26504913 -170690519 + B4A SINE B4 11 275 -17 7 787 5548 70 17 3 chr1 26505491 26506213 -170689219 - L1_Mus1 LINE L1 -1 6566 5835 8 787 2602 115 27 0 chr1 26506213 26506614 -170688818 + L1_Mm LINE L1 5017 5428 -455 9 787 222 322 0 33 chr1 26507448 26507570 -170687862 + T-rich Low_complexity Low_complexity 1 118 0 1 787 659 87 0 0 chr1 26507579 26507683 -170687749 - L1_Mus2 LINE L1 0 6566 6463 1 787 1325 173 0 30 chr1 26507685 26507953 -170687479 - Lx LINE L1 -18 6636 6377 1 787 1019 206 49 5 chr1 26508149 26508373 -170687059 + Lx2B LINE L1 6763 6996 -4 1 787 25 31 0 0 chr1 26510043 26510075 -170685357 + AT_rich Low_complexity Low_complexity 1 32 0 1 787 1060 134 18 0 chr1 26510095 26510259 -170685173 - B2_Mm2 SINE B2 -28 167 1 1 787 399 21 0 0 chr1 26511128 26511176 -170684256 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 787 299 147 62 21 chr1 26511262 26511336 -170684096 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 787 1200 98 0 0 chr1 26511336 26511509 -170683923 + (TCCA)n Simple_repeat Simple_repeat 1 173 0 1 787 1389 70 7 2 chr1 26511509 26511710 -170683722 + (TCTA)n Simple_repeat Simple_repeat 1 201 0 1 787 21 57 0 0 chr1 26512000 26512035 -170683397 + AT_rich Low_complexity Low_complexity 1 35 0 2 787 256 231 15 0 chr1 26512303 26512368 -170683064 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 787 312 379 69 6 chr1 26512588 26512763 -170682669 + B3A SINE B2 13 198 0 2 787 3972 84 21 14 chr1 26513245 26513803 -170681629 - L1_Mus3 LINE L1 -166 6472 5911 2 787 874 80 14 7 chr1 26513803 26513942 -170681490 + L1_Mus3 LINE L1 6492 6631 -7 2 787 650 75 0 11 chr1 26513996 26514090 -170681342 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 787 339 297 92 8 chr1 26514099 26514218 -170681214 - B4 SINE B4 0 292 164 2 787 1839 191 191 11 chr1 26514220 26514665 -170680767 - RLTR11A LTR ERVK 0 528 4 2 787 200 100 0 24 chr1 26514717 26514758 -170680674 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2 787 2954 264 58 34 chr1 26514888 26515879 -170679553 + Lx9 LINE L1 6071 7084 -560 2 787 915 149 0 0 chr1 26515911 26516079 -170679353 + (TTTC)n Simple_repeat Simple_repeat 4 171 0 2 787 26 30 0 0 chr1 26516161 26516194 -170679238 + AT_rich Low_complexity Low_complexity 1 33 0 3 787 22 80 0 0 chr1 26516584 26516634 -170678798 + AT_rich Low_complexity Low_complexity 1 50 0 3 787 210 71 0 0 chr1 26518077 26518105 -170677327 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 787 4143 236 41 31 chr1 26518459 26519485 -170675947 + Lx5 LINE L1 6013 7048 -2 3 787 1058 77 35 0 chr1 26521705 26521848 -170673584 + B1_Mus1 SINE Alu 1 148 0 3 787 209 98 0 68 chr1 26521848 26521892 -170673540 + A-rich Low_complexity Low_complexity 6 46 0 3 787 345 350 42 25 chr1 26521999 26522354 -170673078 + L1_Rod LINE L1 2080 2440 -3407 3 787 31 0 0 0 chr1 26522390 26522421 -170673011 + AT_rich Low_complexity Low_complexity 1 31 0 3 787 804 110 17 8 chr1 26522421 26522540 -170672892 - PB1D9 SINE Alu 0 120 1 3 787 225 65 0 0 chr1 26522654 26522685 -170672747 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 3 787 287 290 18 47 chr1 26522892 26523062 -170672370 + L1_Rod LINE L1 2803 2967 -2880 3 787 294 148 0 0 chr1 26523240 26523294 -170672138 + (GGA)n Simple_repeat Simple_repeat 2 55 0 4 787 1073 131 0 78 chr1 26523731 26523922 -170671510 + RLTR9F LTR ERVK 1 176 -239 4 787 426 79 0 0 chr1 26524430 26524493 -170670939 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 787 3529 84 10 4 chr1 26524705 26525196 -170670236 + L1Md_F2 LINE L1 6087 6580 -2 4 787 241 294 0 52 chr1 26525266 26525363 -170670069 + Lx8 LINE L1 5808 5899 -1574 4 787 3235 225 97 14 chr1 26525786 26526048 -170669384 + L1_Mur3 LINE L1 1121 1407 -4473 4 787 1095 82 14 0 chr1 26526048 26526194 -170669238 + B1_Mus1 SINE Alu 1 148 0 4 787 510 61 0 0 chr1 26526196 26526262 -170669170 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 4 787 618 60 0 0 chr1 26526262 26526344 -170669088 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 787 3235 224 89 20 chr1 26526344 26527206 -170668226 + L1_Mur3 LINE L1 1408 2327 -3553 4 787 2714 36 0 45 chr1 26527208 26527561 -170667871 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 787 6795 35 2 6 chr1 26527561 26528372 -170667060 - IAPEz-int LTR ERVK 0 6481 5674 4 787 37416 24 18 9 chr1 26528350 26532717 -170662715 - IAPEz-int LTR ERVK -2066 4415 8 4 787 2714 36 0 45 chr1 26532717 26533070 -170662362 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 787 8129 218 53 17 chr1 26533070 26533724 -170661708 + L1_Mur3 LINE L1 2325 2988 -2892 4 787 458 91 0 13 chr1 26533724 26533802 -170661630 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 787 8129 218 53 17 chr1 26533802 26535364 -170660068 + L1_Mur3 LINE L1 2989 4621 -1259 4 787 276 30 0 0 chr1 26535365 26535398 -170660034 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 787 564 236 94 47 chr1 26535481 26535547 -170659885 + Lx7 LINE L1 7467 7546 -150 5 787 2898 88 8 0 chr1 26535547 26535944 -170659488 + MTB LTR MaLR 1 400 0 5 787 564 236 94 47 chr1 26535944 26536090 -170659342 + Lx7 LINE L1 7547 7689 -7 5 787 7354 77 2 7 chr1 26536096 26537219 -170658213 - L1Md_F2 LINE L1 0 6582 5467 5 787 566 157 0 8 chr1 26537509 26537631 -170657801 + (TG)n Simple_repeat Simple_repeat 2 122 0 5 787 2431 185 11 77 chr1 26537860 26538416 -170657016 + RLTR24 LTR ERV1 1 519 -10 5 787 240 59 0 0 chr1 26538740 26538774 -170656658 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 787 1083 59 22 0 chr1 26538774 26538910 -170656522 - B1_Mus1 SINE Alu -9 139 1 5 787 243 74 18 53 chr1 26539316 26539373 -170656059 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 5 787 228 277 95 51 chr1 26539472 26539609 -170655823 - L2 LINE L2 -1377 2042 1900 6 787 6324 189 54 10 chr1 26539906 26541233 -170654199 - Lx3C LINE L1 -2 6974 5589 6 787 620 310 10 34 chr1 26541497 26541704 -170653728 - B3 SINE B2 -14 202 1 6 787 27 96 0 0 chr1 26541859 26541942 -170653490 + AT_rich Low_complexity Low_complexity 1 83 0 6 787 3194 81 2 47 chr1 26542982 26543501 -170651931 - L1Md_F2 LINE L1 0 6582 6116 6 787 1795 134 85 0 chr1 26543501 26543807 -170651625 + IAPEY3_LTR LTR ERVK 1 332 0 6 787 8016 65 1 1 chr1 26543808 26545079 -170650353 - L1Md_F2 LINE L1 -464 6118 4848 6 787 311 286 75 53 chr1 26545529 26545662 -170649770 + B4A SINE B4 10 145 -147 6 787 347 216 0 8 chr1 26545669 26545786 -170649646 + (CA)n Simple_repeat Simple_repeat 2 117 0 6 787 429 270 6 22 chr1 26545819 26546001 -170649431 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 787 555 219 34 0 chr1 26546129 26546275 -170649157 - Lx3B LINE L1 -1 6972 6822 6 787 204 125 0 0 chr1 26546354 26546386 -170649046 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 787 322 228 13 0 chr1 26546410 26546489 -170648943 - Lx9 LINE L1 -219 7425 7346 7 787 8410 105 10 35 chr1 26546515 26548565 -170646867 - L1_Mus1 LINE L1 0 6567 4571 7 787 31964 90 9 16 chr1 26548573 26554792 -170640640 - L1Md_F2 LINE L1 -15 6567 397 7 787 1065 258 34 31 chr1 26554792 26555116 -170640316 - Lx9 LINE L1 -285 7359 7035 7 787 920 229 79 0 chr1 26555709 26555962 -170639470 - Lx9 LINE L1 -1 7643 7371 7 787 37263 51 2 8 chr1 26555962 26562141 -170633291 - L1Md_F2 LINE L1 0 6582 448 7 787 2527 250 32 22 chr1 26562138 26562756 -170632676 - Lx9 LINE L1 -261 7383 6758 7 787 2310 197 103 102 chr1 26562756 26563366 -170632066 + RMER19C LTR ERVK 1 611 0 7 787 2527 250 32 22 chr1 26563366 26563429 -170632003 - Lx9 LINE L1 -887 6757 6695 7 787 25 51 0 0 chr1 26563483 26563522 -170631910 + AT_rich Low_complexity Low_complexity 1 39 0 7 787 453 103 0 0 chr1 26566130 26566198 -170629234 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 7 787 2266 209 90 50 chr1 26566204 26566308 -170629124 - RMER1C Other Other -5 1337 1214 7 787 378 57 0 0 chr1 26566308 26566361 -170629071 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 7 787 2266 209 90 50 chr1 26566361 26566540 -170628892 - RMER1C Other Other -129 1213 1041 7 787 4479 123 6 6 chr1 26566540 26567226 -170628206 + Lx2A1 LINE L1 6323 7008 0 8 787 2266 209 90 50 chr1 26567226 26567540 -170627892 - RMER1C Other Other -302 1040 716 7 787 405 378 0 79 chr1 26567737 26567901 -170627531 + RSINE1 SINE B4 15 165 0 8 787 21 36 0 0 chr1 26567914 26567942 -170627490 + AT_rich Low_complexity Low_complexity 1 28 0 8 787 277 317 78 35 chr1 26569100 26569358 -170626074 - L1MA4 LINE L1 -240 6060 5792 8 787 269 309 49 22 chr1 26569422 26569607 -170625825 - L1MA4 LINE L1 -517 5783 5594 8 787 191 229 16 0 chr1 26569707 26569768 -170625664 + CT-rich Low_complexity Low_complexity 3 64 0 8 787 616 219 51 0 chr1 26569782 26569919 -170625513 - B1_Mur4 SINE Alu -6 144 1 8 787 308 196 29 10 chr1 26569929 26570032 -170625400 - Lx9 LINE L1 -7 7637 7533 8 787 471 63 0 0 chr1 26570049 26570112 -170625320 + (TATG)n Simple_repeat Simple_repeat 4 66 0 8 787 499 348 81 8 chr1 26570116 26570362 -170625070 - Lx8 LINE L1 -190 7283 7020 8 787 249 242 33 49 chr1 26570360 26570482 -170624950 - L1MA4 LINE L1 -718 5594 5479 8 787 571 310 117 28 chr1 26570568 26571243 -170624189 - L1MC2 LINE L1 -21 6323 5576 8 787 2220 120 90 9 chr1 26571236 26571712 -170623720 - Lx2 LINE L1 -1059 5938 5431 9 787 4281 159 12 7 chr1 26571712 26572477 -170622955 + Lx2 LINE L1 6227 6995 -2 9 787 417 309 87 16 chr1 26572502 26572814 -170622618 - L1MC2 LINE L1 -752 5592 5259 8 787 2185 262 40 119 chr1 26572908 26573576 -170621856 + RMER1B Other Other 215 862 -204 9 787 888 131 73 0 chr1 26573576 26573713 -170621719 + B1_Mus2 SINE Alu 1 147 0 9 787 2185 262 40 119 chr1 26573713 26573954 -170621478 + RMER1B Other Other 863 1052 -14 9 787 243 0 0 0 chr1 26574163 26574190 -170621242 + (T)n Simple_repeat Simple_repeat 1 27 0 9 787 334 257 154 16 chr1 26574190 26574466 -170620966 - L1MA4 LINE L1 -1198 4948 4644 8 787 25 51 0 0 chr1 26575027 26575066 -170620366 + AT_rich Low_complexity Low_complexity 1 39 0 9 787 227 293 27 63 chr1 26575195 26575417 -170620015 - Lx7 LINE L1 -20 7676 7463 9 787 331 345 8 8 chr1 26576460 26576577 -170618855 - ID_B1 SINE B4 -1 223 107 9 787 299 387 50 0 chr1 26576940 26577121 -170618311 - LTR16E1 LTR ERVL -106 432 243 9 787 297 51 0 0 chr1 26577207 26577246 -170618186 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 9 787 1283 90 16 0 chr1 26577246 26577434 -170617998 - Lx LINE L1 -11 6643 6453 1 787 345 290 29 43 chr1 26577477 26577619 -170617813 + L1_Mm LINE L1 5427 5595 -738 1 787 251 264 53 41 chr1 26577625 26577723 -170617709 - B3 SINE B2 -94 104 6 1 787 281 341 28 28 chr1 26577728 26577906 -170617526 + Lx9 LINE L1 5876 6053 -1591 1 787 1803 195 0 78 chr1 26577992 26578376 -170617056 - ORR1B1 LTR MaLR 0 394 41 1 787 7997 188 33 82 chr1 26578383 26580448 -170614984 - ORR1B1-int LTR MaLR 0 1963 1 1 787 1403 221 38 99 chr1 26580448 26580820 -170614612 - ORR1B1 LTR MaLR -5 389 41 1 787 341 346 68 0 chr1 26580827 26580960 -170614472 + Lx8 LINE L1 6268 6409 -1064 1 787 2145 275 85 43 chr1 26580965 26581075 -170614357 - RMER1B Other Other -4 1062 952 1 787 261 0 0 0 chr1 26581075 26581104 -170614328 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 787 2145 275 85 43 chr1 26581104 26581136 -170614296 - RMER1B Other Other -115 951 945 1 787 399 21 0 0 chr1 26581136 26581184 -170614248 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 787 2145 279 81 43 chr1 26581184 26581819 -170613613 - RMER1B Other Other -122 944 6 1 787 322 214 0 0 chr1 26581824 26581880 -170613552 - RMER1A Other Other -561 469 414 1 787 933 221 25 108 chr1 26581891 26582254 -170613178 - RMER1A Other Other -295 735 55 1 787 1010 299 60 17 chr1 26582754 26583104 -170612328 - ORR1D2 LTR MaLR 0 370 6 1 787 25 0 0 0 chr1 26583235 26583260 -170612172 + AT_rich Low_complexity Low_complexity 1 25 0 1 787 198 98 59 0 chr1 26584140 26584191 -170611241 + T-rich Low_complexity Low_complexity 2 55 0 1 787 612 73 0 0 chr1 26586135 26586217 -170609215 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 787 432 0 0 0 chr1 26586218 26586266 -170609166 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1 787 803 166 0 6 chr1 26586266 26586424 -170609008 + CT-rich Low_complexity Low_complexity 1 157 0 1 787 229 344 21 21 chr1 26587013 26587108 -170608324 + MLT1N2 LTR MaLR 454 548 -14 1 787 351 0 0 0 chr1 26587404 26587443 -170607989 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 787 640 154 17 0 chr1 26587443 26587560 -170607872 - Lx LINE L1 -12 6642 6524 1 787 21 71 0 0 chr1 26587628 26587670 -170607762 + AT_rich Low_complexity Low_complexity 1 42 0 1 787 240 206 75 0 chr1 26587849 26587956 -170607476 - Lx9 LINE L1 -6 7638 7524 1 787 423 0 0 0 chr1 26589993 26590040 -170605392 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 787 851 98 0 8 chr1 26590462 26590574 -170604858 + B1_Mus1 SINE Alu 25 136 -12 1 787 270 0 0 0 chr1 26590574 26590604 -170604828 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 787 851 98 0 8 chr1 26590604 26590615 -170604817 + B1_Mus1 SINE Alu 137 147 -1 1 787 451 333 41 0 chr1 26590695 26590866 -170604566 + RMER15 LTR ERVL 393 570 -5 1 787 1093 344 58 25 chr1 26591094 26591625 -170603807 + Lx8 LINE L1 6364 6912 -561 1 787 11128 64 1 0 chr1 26591785 26593219 -170602213 + L1Md_F3 LINE L1 4152 5586 -297 1 787 8112 42 6 0 chr1 26593220 26594211 -170601221 + L1Md_F3 LINE L1 5588 6584 0 1 787 346 356 28 22 chr1 26594230 26594408 -170601024 + Lx8 LINE L1 7131 7309 -164 1 787 21 57 0 0 chr1 26594720 26594755 -170600677 + AT_rich Low_complexity Low_complexity 1 35 0 1 787 235 244 77 0 chr1 26594878 26594956 -170600476 + L1MC2 LINE L1 5334 5417 -2578 1 787 2130 171 147 30 chr1 26594959 26595430 -170600002 + Lx2 LINE L1 6472 6997 0 1 787 752 330 76 60 chr1 26595487 26596381 -170599051 + L1MC2 LINE L1 5413 6320 -24 1 787 1148 76 0 0 chr1 26596628 26596772 -170598660 - B1_Mus2 SINE Alu -2 145 2 1 787 425 90 15 0 chr1 26597338 26597405 -170598027 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 787 3300 121 18 0 chr1 26597508 26597997 -170597435 + Lx3A LINE L1 6468 6965 -16 1 787 387 60 0 0 chr1 26597998 26598048 -170597384 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 787 532 310 36 29 chr1 26599264 26599543 -170595889 + L1M2 LINE L1 3503 3786 -2360 1 787 481 264 13 39 chr1 26599549 26599703 -170595729 - Lx9 LINE L1 -423 7221 7072 1 787 3425 57 28 11 chr1 26599843 26600301 -170595131 + L1Md_F2 LINE L1 5120 5585 -298 1 787 7522 68 10 3 chr1 26600302 26601291 -170594141 + L1Md_F2 LINE L1 5587 6582 0 1 787 1002 300 36 106 chr1 26601369 26601769 -170593663 + L1_Rod LINE L1 3746 4098 -1749 1 787 1576 45 0 0 chr1 26601769 26601967 -170593465 - L1Md_A LINE L1 -1 6581 6384 1 787 1002 300 36 106 chr1 26601967 26602233 -170593199 + L1_Rod LINE L1 4099 4365 -1482 1 787 1135 82 0 0 chr1 26603899 26604045 -170591387 + B1_Mus1 SINE Alu 1 146 -2 1 787 22 80 0 0 chr1 26604160 26604210 -170591222 + AT_rich Low_complexity Low_complexity 1 50 0 1 787 1418 194 0 7 chr1 26604226 26604507 -170590925 - Lx2B LINE L1 -5 6995 6717 1 787 369 305 62 0 chr1 26604752 26604880 -170590552 + ORR1E LTR MaLR 1 136 -223 1 787 470 331 117 31 chr1 26605042 26605150 -170590282 + MT2A LTR ERVL 1 119 -414 1 787 2978 51 0 0 chr1 26605150 26605504 -170589928 + IAPEY2_LTR LTR ERVK 1 354 -3 1 787 470 331 117 31 chr1 26605504 26605753 -170589679 + MT2A LTR ERVL 120 388 -145 1 787 183 80 0 0 chr1 26606847 26606872 -170588560 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 787 3799 133 23 2 chr1 26606872 26607480 -170587952 - Lx3_Mus LINE L1 -22 6987 6367 1 98 1933 76 0 8 chr1 26607467 26607731 -170587701 + Lx3_Mus LINE L1 5661 5922 -1087 1 788 2638 122 21 2 chr1 26607762 26608188 -170587244 + Lx3_Mus LINE L1 5908 6341 -668 1 788 21 36 0 0 chr1 26608188 26608216 -170587216 + AT_rich Low_complexity Low_complexity 1 28 0 1 788 593 214 47 23 chr1 26610114 26610243 -170585189 + MER94 DNA AcHobo 3 134 0 1 788 198 0 0 0 chr1 26610646 26610668 -170584764 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 788 408 20 0 0 chr1 26610668 26610717 -170584715 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 788 238 288 13 27 chr1 26610737 26610812 -170584620 - Lx5 LINE L1 -282 6768 6695 1 788 459 0 0 0 chr1 26610834 26610885 -170584547 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 788 1751 251 60 22 chr1 26610907 26611509 -170583923 - Lx5 LINE L1 -48 7002 6450 1 788 222 356 67 8 chr1 26611616 26611735 -170583697 - L2a LINE L2 -296 3130 3005 1 788 435 194 0 0 chr1 26612905 26612998 -170582434 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 788 335 382 90 24 chr1 26613300 26613512 -170581920 + LTR33B LTR ERVL 60 285 -218 1 788 241 303 49 29 chr1 26613769 26613871 -170581561 - MER58B DNA MER1_type -13 328 225 1 788 405 0 0 0 chr1 26613872 26613917 -170581515 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 788 310 347 0 0 chr1 26613919 26614043 -170581389 - L1MB1 LINE L1 -246 5922 5799 1 788 292 258 147 14 chr1 26614152 26614434 -170580998 - L1M3 LINE L1 -833 5479 5153 1 788 576 318 33 33 chr1 26614482 26614596 -170580836 - B3A SINE B2 -15 183 69 1 788 2721 99 0 20 chr1 26614596 26614999 -170580433 + L1Md_F2 LINE L1 6176 6570 -12 1 788 576 318 33 33 chr1 26614999 26615066 -170580366 - B3A SINE B2 -130 68 3 1 788 403 311 96 12 chr1 26615074 26615409 -170580023 - L1M3 LINE L1 -987 5153 4791 1 788 339 234 64 28 chr1 26615415 26615556 -170579876 + L1M3 LINE L1 4681 4826 -1314 1 788 272 307 45 11 chr1 26615664 26615753 -170579679 + PB1D10 SINE Alu 13 104 -13 1 788 1137 183 25 12 chr1 26615769 26616012 -170579420 - Lx2A1 LINE L1 -3 7005 6760 1 788 28369 130 25 12 chr1 26616945 26622124 -170573308 + L1Md_F LINE L1 591 5840 -43 1 788 786 31 0 21 chr1 26622104 26622201 -170573231 - L1_Mus1 LINE L1 -653 5914 5820 1 788 440 71 100 0 chr1 26622203 26622273 -170573159 + L1_Mus2 LINE L1 6489 6565 -1 1 788 385 277 0 10 chr1 26622587 26622689 -170572743 + L1_Mur3 LINE L1 122 222 -7506 1 788 3352 38 2 0 chr1 26622689 26623084 -170572348 + MTA_Mm LTR MaLR 1 396 0 1 788 518 337 80 8 chr1 26623111 26623362 -170572070 + L1_Mur3 LINE L1 291 559 -7169 1 788 987 244 25 43 chr1 26623358 26623720 -170571712 + L1_Mur3 LINE L1 859 1188 -6540 1 788 2013 283 57 53 chr1 26624095 26625288 -170570144 + RMER1B Other Other 47 1062 -4 1 788 449 137 19 29 chr1 26625290 26625395 -170570037 + GA-rich Low_complexity Low_complexity 3 106 0 1 788 2985 197 35 26 chr1 26625420 26626217 -170569215 + L1_Mur3 LINE L1 1129 1935 -3945 1 788 1173 129 52 0 chr1 26626217 26626427 -170569005 - Lx3_Mus LINE L1 -1 7008 6788 1 788 2870 105 14 2 chr1 26626429 26626857 -170568575 - Lx3_Mus LINE L1 -395 6614 6182 1 788 4592 210 104 35 chr1 26626853 26628260 -170567172 + L1_Mur3 LINE L1 1936 3438 -2442 1 788 745 185 134 6 chr1 26628289 26628428 -170567004 + L1_Mur3 LINE L1 4112 4250 -1630 1 788 333 0 0 0 chr1 26628428 26628465 -170566967 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 1 788 745 185 134 6 chr1 26628465 26628504 -170566928 + L1_Mur3 LINE L1 4251 4313 -1567 1 788 246 265 29 14 chr1 26628534 26628603 -170566829 + Lx7 LINE L1 6397 6466 -1230 1 788 716 265 51 35 chr1 26628679 26628933 -170566499 - Lx9 LINE L1 -145 7499 7242 1 788 239 250 40 27 chr1 26628931 26629005 -170566427 + Lx9 LINE L1 7165 7239 -405 1 788 554 207 83 0 chr1 26629803 26629924 -170565508 + MTD LTR MaLR 1 131 -290 1 788 180 111 0 0 chr1 26629926 26629953 -170565479 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 788 8236 112 50 7 chr1 26629957 26631776 -170563656 - Lx3_Mus LINE L1 -21 6988 5103 1 788 15681 114 17 27 chr1 26631746 26632363 -170563069 - Lx3_Mus LINE L1 -1618 4268 3644 1 788 405 0 0 0 chr1 26632363 26632408 -170563024 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 788 15681 114 17 27 chr1 26632408 26632710 -170562722 - Lx3_Mus LINE L1 -2243 3643 3344 1 788 300 27 0 0 chr1 26632710 26632747 -170562685 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1 788 15681 114 17 27 chr1 26632747 26634453 -170560979 - Lx3_Mus LINE L1 -2543 3343 1672 1 788 6396 44 1 8 chr1 26634455 26635250 -170560182 - L1Md_F2 LINE L1 0 6582 5793 1 788 2354 179 63 26 chr1 26635250 26635842 -170559590 - Lx3_Mus LINE L1 -5876 1108 4 1 788 1266 293 10 0 chr1 26635845 26636142 -170559290 + MTD LTR MaLR 108 407 -12 1 788 528 327 68 55 chr1 26636460 26637779 -170557653 + L1M2 LINE L1 3630 4922 -925 1 788 5291 146 57 15 chr1 26637779 26638699 -170556733 - RMER17B LTR ERVK 0 958 1 1 788 362 86 8 72 chr1 26638704 26638829 -170556603 + A-rich Low_complexity Low_complexity 3 119 0 1 788 573 15 0 0 chr1 26638929 26638995 -170556437 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 788 378 0 0 0 chr1 26638995 26639036 -170556396 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 788 710 23 11 0 chr1 26639323 26639411 -170556021 + (TC)n Simple_repeat Simple_repeat 1 89 0 1 788 6512 130 48 0 chr1 26639412 26639520 -170555912 - Lx LINE L1 -10 6644 6537 1 788 204 40 0 0 chr1 26639520 26639545 -170555887 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 788 6512 132 50 0 chr1 26639545 26640548 -170554884 - Lx LINE L1 -118 6536 5448 1 788 246 32 0 0 chr1 26640548 26640579 -170554853 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 788 2832 150 77 2 chr1 26640579 26640689 -170554743 - Lx LINE L1 -436 5447 5338 1 788 244 327 40 96 chr1 26640717 26640842 -170554590 + ORR1E LTR MaLR 220 337 -22 1 788 686 327 112 28 chr1 26641830 26642287 -170553145 + Lx8 LINE L1 6105 6599 -874 1 788 487 371 59 3 chr1 26642398 26642701 -170552731 + Lx9 LINE L1 6302 6621 -1023 1 788 997 162 41 23 chr1 26642688 26642859 -170552573 - Lx3B LINE L1 -150 6823 6650 1 788 662 231 6 6 chr1 26642859 26643016 -170552416 + Lx3B LINE L1 6814 6970 -3 1 788 28 48 0 0 chr1 26643024 26643066 -170552366 + AT_rich Low_complexity Low_complexity 1 42 0 1 788 37164 36 12 12 chr1 26643066 26644714 -170550718 - L1Md_T LINE L1 -2 6580 4914 1 788 231 167 46 77 chr1 26644714 26644779 -170550653 + RMER20A LTR ERVK 186 248 -268 2 788 37164 36 12 12 chr1 26644779 26648444 -170546988 - L1Md_T LINE L1 -2 4913 1203 1 788 4419 136 2 146 chr1 26648410 26649416 -170546016 - L1Md_F LINE L1 -5380 1139 279 2 788 697 289 71 15 chr1 26649465 26649732 -170545700 + Lx9 LINE L1 6623 6904 -740 1 788 912 299 91 53 chr1 26649861 26650355 -170545077 + Lx9 LINE L1 6925 7437 -207 1 788 22 0 0 0 chr1 26650605 26650627 -170544805 + AT_rich Low_complexity Low_complexity 1 22 0 2 788 189 0 0 0 chr1 26650681 26650702 -170544730 + (A)n Simple_repeat Simple_repeat 1 21 0 2 788 3533 142 23 192 chr1 26651096 26652165 -170543267 + RMER17D LTR ERVK 1 889 0 2 788 24 32 0 0 chr1 26652170 26652201 -170543231 + AT_rich Low_complexity Low_complexity 1 31 0 2 788 713 201 122 26 chr1 26652254 26652443 -170542989 + B3 SINE B2 3 209 -7 2 788 855 78 0 0 chr1 26652789 26652905 -170542527 + (TCCC)n Simple_repeat Simple_repeat 1 116 0 2 788 1718 220 75 6 chr1 26652905 26653252 -170542180 - Lx5 LINE L1 -16 7034 6664 2 788 234 0 0 0 chr1 26653375 26653401 -170542031 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 788 1096 54 0 20 chr1 26653401 26653542 -170541890 - B1_Mm SINE Alu -8 139 1 2 788 188 338 26 0 chr1 26655072 26655149 -170540283 - MIR SINE MIR -92 170 92 2 788 21 82 0 0 chr1 26655900 26655949 -170539483 + AT_rich Low_complexity Low_complexity 1 49 0 2 788 185 357 12 23 chr1 26656191 26656277 -170539155 + L2b LINE L2 3218 3302 -73 2 788 602 344 54 27 chr1 26656840 26656957 -170538475 + B4A SINE B4 8 128 -164 2 788 555 29 0 0 chr1 26656957 26657026 -170538406 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 2 788 602 344 54 27 chr1 26657026 26657168 -170538264 + B4A SINE B4 129 274 -18 2 788 735 62 0 0 chr1 26657209 26657306 -170538126 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 788 522 0 0 0 chr1 26657418 26657476 -170537956 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 788 2238 192 43 35 chr1 26657641 26658105 -170537327 - Lx2 LINE L1 0 6997 6530 2 788 690 188 44 8 chr1 26658826 26658972 -170536460 + B1_Mus1 SINE Alu 2 149 -1 2 788 494 112 51 17 chr1 26660560 26660678 -170534754 + Lx2 LINE L1 6875 6996 -1 2 788 675 286 77 0 chr1 26661360 26661556 -170533876 - B3 SINE B2 -1 215 5 2 788 22 0 0 0 chr1 26661709 26661731 -170533701 + AT_rich Low_complexity Low_complexity 1 22 0 2 788 189 74 0 0 chr1 26661804 26661831 -170533601 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 788 4742 133 104 16 chr1 26661899 26662167 -170533265 - RMER17B LTR ERVK 0 958 651 2 788 210 37 0 0 chr1 26662167 26662194 -170533238 + (CCA)n Simple_repeat Simple_repeat 1 27 0 2 788 4742 133 104 16 chr1 26662194 26662802 -170532630 - RMER17B LTR ERVK -308 650 5 2 788 999 233 211 13 chr1 26662802 26662977 -170532455 + RLTR14 LTR ERV1 5 216 -166 2 788 405 0 0 0 chr1 26662977 26663022 -170532410 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 788 999 233 211 13 chr1 26663022 26663159 -170532273 + RLTR14 LTR ERV1 217 378 -4 2 788 347 280 0 59 chr1 26664134 26664320 -170531112 + A-rich Low_complexity Low_complexity 4 178 0 2 788 312 367 70 53 chr1 26664576 26664803 -170530629 - LTR16A LTR ERVL -120 331 101 2 788 649 126 8 23 chr1 26665539 26665669 -170529763 + CT-rich Low_complexity Low_complexity 3 130 0 2 788 1053 230 116 18 chr1 26665990 26666327 -170529105 - ORR1D1 LTR MaLR -4 370 1 2 788 384 77 0 0 chr1 26666600 26666652 -170528780 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 788 283 309 62 23 chr1 26668234 26668363 -170527069 - MLT1A1 LTR MaLR -265 143 10 2 788 469 196 39 0 chr1 26669133 26669235 -170526197 - ORR1B2 LTR MaLR 0 367 262 2 788 1799 93 15 8 chr1 26669297 26669558 -170525874 + L1Md_F2 LINE L1 6301 6563 -19 2 788 488 272 43 19 chr1 26669594 26669755 -170525677 + Lx6 LINE L1 7277 7441 -19 2 788 1296 240 14 82 chr1 26669925 26670258 -170525174 - ORR1B2 LTR MaLR -23 347 3 2 788 3095 83 5 36 chr1 26670340 26670788 -170524644 - L1_Mus2 LINE L1 -2 6564 6131 2 788 290 380 31 0 chr1 26671026 26671155 -170524277 - ORR1B2 LTR MaLR -195 184 52 2 788 277 380 0 14 chr1 26671653 26671797 -170523635 - Lx8 LINE L1 -155 7318 7177 2 788 2771 242 49 85 chr1 26671923 26672375 -170523057 - Lx7 LINE L1 0 7696 7265 2 788 2795 28 0 3 chr1 26672375 26672703 -170522729 + IAPLTR2b LTR ERVK 1 327 0 2 788 2771 242 49 85 chr1 26672703 26672967 -170522465 - Lx7 LINE L1 -432 7264 7014 2 788 1064 83 14 0 chr1 26672967 26673111 -170522321 - B1_Mm SINE Alu -1 146 1 2 788 2771 242 49 85 chr1 26673111 26673291 -170522141 - Lx7 LINE L1 -683 7013 6831 2 788 1480 245 94 29 chr1 26673307 26673690 -170521742 - Lx5 LINE L1 -3 7047 6640 2 788 799 148 12 88 chr1 26673693 26673766 -170521666 - Lx7 LINE L1 -860 6836 6771 2 788 1039 239 169 77 chr1 26673766 26674110 -170521322 + RLTR16 LTR ERVK 5 403 -102 2 788 453 19 0 0 chr1 26674110 26674164 -170521268 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 788 1039 239 169 77 chr1 26674164 26674276 -170521156 + RLTR16 LTR ERVK 404 502 -3 2 788 799 148 12 88 chr1 26674276 26674372 -170521060 - Lx7 LINE L1 -926 6770 6680 2 788 426 285 20 40 chr1 26677512 26677662 -170517770 + B1_Mus2 SINE Alu 1 147 0 2 788 415 125 22 22 chr1 26677666 26677756 -170517676 + GA-rich Low_complexity Low_complexity 3 92 0 2 788 21 36 0 0 chr1 26677794 26677822 -170517610 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 372 271 73 0 chr1 26678311 26678407 -170517025 - B4A SINE B4 -18 274 172 2 788 212 276 12 62 chr1 26678998 26679079 -170516353 - L2c LINE L2 0 3387 3311 2 788 633 321 75 36 chr1 26679315 26679596 -170515836 - B4 SINE B4 0 292 1 2 788 597 193 0 0 chr1 26679779 26679893 -170515539 + ORR1B1 LTR MaLR 3 116 -278 2 788 1092 110 0 0 chr1 26680952 26681106 -170514326 - B2_Mm2 SINE B2 -41 154 1 2 788 232 70 23 23 chr1 26681178 26681222 -170514210 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 2 788 360 337 135 72 chr1 26681707 26682011 -170513421 + LTR16B2 LTR ERVL 106 428 -34 2 788 462 377 14 19 chr1 26682263 26682471 -170512961 + Lx8 LINE L1 7089 7295 -178 2 788 420 222 0 100 chr1 26682783 26682883 -170512549 + B1_Mur4 SINE Alu 1 90 -60 2 788 290 179 0 0 chr1 26683030 26683086 -170512346 + B1_Mus2 SINE Alu 91 146 -1 2 788 2546 223 35 6 chr1 26683821 26684366 -170511066 - Lx2B LINE L1 0 7000 6440 2 788 1633 135 18 44 chr1 26684681 26685027 -170510405 - RMER17D2 LTR ERVK 0 889 519 2 788 500 94 59 0 chr1 26685028 26685113 -170510319 - L1_Mus1 LINE L1 -552 6015 5926 2 788 386 44 0 0 chr1 26685113 26685158 -170510274 - L1_Mus1 LINE L1 -916 5651 5607 2 788 3971 81 0 0 chr1 26685158 26685679 -170509753 + L1_Mus1 LINE L1 6047 6567 0 2 788 237 159 0 0 chr1 26685731 26685775 -170509657 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2 788 2705 128 143 4 chr1 26685813 26686331 -170509101 - RMER17A2 LTR ERVK -316 590 1 2 788 374 275 55 0 chr1 26686805 26686831 -170508601 - ID_B1 SINE B4 -108 116 2 2 788 552 121 0 0 chr1 26686831 26686914 -170508518 - BC1_Mm scRNA scRNA -68 84 2 2 788 736 146 0 43 chr1 26687195 26687381 -170508051 + CT-rich Low_complexity Low_complexity 2 179 0 2 788 713 258 15 30 chr1 26687553 26687753 -170507679 + B3A SINE B2 2 198 0 2 788 397 153 35 0 chr1 26687801 26687886 -170507546 - Lx2 LINE L1 -17 6980 6893 2 788 207 146 0 0 chr1 26688196 26688237 -170507195 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 788 3544 193 109 31 chr1 26689382 26690264 -170505168 + Lx4B LINE L1 6108 7058 0 2 788 477 0 0 0 chr1 26691240 26691293 -170504139 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 788 3382 11 0 0 chr1 26692553 26692927 -170502505 - MERVL-int LTR ERVL -2447 3038 2665 2 788 1008 228 261 35 chr1 26694371 26694830 -170500602 + RMER2 LTR ERV1 1 563 -4 2 788 350 293 103 58 chr1 26695575 26695836 -170499596 + Lx8 LINE L1 7186 7458 -15 2 788 25 0 0 0 chr1 26696453 26696478 -170498954 + AT_rich Low_complexity Low_complexity 1 25 0 2 788 609 333 46 56 chr1 26696970 26697272 -170498160 + MTE2b LTR MaLR 81 379 0 2 788 376 150 23 38 chr1 26697472 26697604 -170497828 + (TA)n Simple_repeat Simple_repeat 1 130 0 2 788 356 0 23 0 chr1 26698090 26698134 -170497298 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 788 1530 303 53 15 chr1 26698600 26698966 -170496466 - Lx8 LINE L1 -611 6862 6486 2 788 1185 73 0 0 chr1 26698966 26699144 -170496288 + (CAAAG)n Simple_repeat Simple_repeat 2 179 0 2 788 1530 303 53 15 chr1 26699144 26699307 -170496125 - Lx8 LINE L1 -988 6485 6313 2 788 199 360 23 0 chr1 26699431 26699517 -170495915 - MIR SINE MIR -105 157 70 2 788 207 184 0 0 chr1 26699897 26699935 -170495497 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 788 421 216 75 67 chr1 26701515 26701732 -170493700 - RLTR11B LTR ERVK -222 219 2 2 788 810 284 8 17 chr1 26701780 26702020 -170493412 + Lx7 LINE L1 7086 7323 -373 2 788 225 0 0 0 chr1 26702045 26702070 -170493362 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 788 309 171 0 73 chr1 26702382 26702467 -170492965 - B1F SINE Alu -2 147 44 2 788 2306 125 68 36 chr1 26702576 26702991 -170492441 + Lx LINE L1 6221 6648 -6 2 788 194 0 39 0 chr1 26702995 26703021 -170492411 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 788 379 264 21 3 chr1 26703022 26703123 -170492309 - B1F SINE Alu -15 105 7 2 788 23 78 0 0 chr1 26704239 26704290 -170491142 + AT_rich Low_complexity Low_complexity 1 51 0 2 788 431 305 39 0 chr1 26704533 26704661 -170490771 - RSINE1 SINE B4 -21 144 12 2 788 1080 73 0 0 chr1 26704708 26704845 -170490587 - B1_Mus1 SINE Alu -10 138 2 2 788 23 0 0 0 chr1 26705392 26705415 -170490017 + AT_rich Low_complexity Low_complexity 1 23 0 2 788 229 353 35 49 chr1 26705876 26706019 -170489413 + B4 SINE B4 3 143 -149 2 788 318 106 0 0 chr1 26706163 26706210 -170489222 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 788 383 325 16 8 chr1 26707231 26707352 -170488080 - MLT1A0 LTR MaLR -2 363 242 2 788 4292 217 35 25 chr1 26708749 26709742 -170485690 - Lx2B LINE L1 0 7000 5998 2 788 6604 101 22 1 chr1 26709751 26711233 -170484199 - L1_Mus2 LINE L1 -8 6558 5044 2 788 1811 113 4 0 chr1 26711232 26711498 -170483934 + L1_Mus2 LINE L1 4793 5059 -824 2 788 284 162 14 81 chr1 26711499 26711573 -170483859 - Lx2B LINE L1 -990 6010 5942 2 788 244 211 0 0 chr1 26711559 26711611 -170483821 - L1_Mur3 LINE L1 -671 5209 5158 3 788 255 353 56 65 chr1 26711618 26711833 -170483599 + LTR80A LTR ERVL 309 521 -62 3 788 2792 83 33 2 chr1 26712487 26712883 -170482549 - L1_Mus1 LINE L1 -507 6060 5653 3 788 3698 70 0 0 chr1 26712885 26713354 -170482078 + L1_Mus1 LINE L1 6099 6567 0 3 788 261 0 0 0 chr1 26714236 26714265 -170481167 + (A)n Simple_repeat Simple_repeat 1 29 0 3 788 263 49 24 0 chr1 26714586 26714627 -170480805 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 3 788 39 22 0 0 chr1 26714733 26714779 -170480653 + AT_rich Low_complexity Low_complexity 1 46 0 3 788 25 0 0 0 chr1 26714819 26714844 -170480588 + AT_rich Low_complexity Low_complexity 1 25 0 3 788 1584 57 0 5 chr1 26714848 26715043 -170480389 - L1_Mus1 LINE L1 -119 6448 6255 3 788 433 76 37 25 chr1 26715043 26715124 -170480308 + L1Md_F2 LINE L1 6500 6581 -1 3 788 1327 189 55 21 chr1 26715827 26716152 -170479280 - L1_Mur3 LINE L1 -1123 4757 4422 3 788 183 129 0 0 chr1 26716152 26716183 -170479249 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 788 1367 208 18 15 chr1 26716195 26716537 -170478895 + Lx7 LINE L1 5207 5549 -331 3 788 656 165 16 198 chr1 26716544 26716660 -170478772 + Lx7 LINE L1 5683 5783 -97 3 788 1646 157 18 0 chr1 26716660 26716940 -170478492 + Lx LINE L1 6360 6644 -10 3 788 794 63 0 0 chr1 26716948 26717059 -170478373 - L1_Mus2 LINE L1 0 6566 6456 3 788 656 171 16 181 chr1 26717059 26717186 -170478246 + Lx7 LINE L1 5784 5896 -1113 3 788 1127 217 107 5 chr1 26717215 26717558 -170477874 + MTC LTR MaLR 11 414 -7 3 788 2382 283 63 15 chr1 26717575 26718379 -170477053 + Lx7 LINE L1 5935 6777 -919 3 788 648 70 0 0 chr1 26718386 26718472 -170476960 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 3 788 685 70 10 39 chr1 26718472 26718576 -170476856 - B1_Mus1 SINE Alu -12 136 36 3 788 901 271 53 44 chr1 26718587 26718907 -170476525 + Lx7 LINE L1 6771 7093 -603 3 788 260 156 44 44 chr1 26718912 26719026 -170476406 + (TA)n Simple_repeat Simple_repeat 2 115 0 3 788 848 234 24 118 chr1 26719028 26719401 -170476031 + Lx7 LINE L1 7359 7696 0 3 788 4369 65 7 0 chr1 26719914 26720480 -170474952 - L1_Mus1 LINE L1 -1 6566 5997 3 788 3151 62 2 0 chr1 26720480 26720931 -170474501 + L1_Mus1 LINE L1 5531 5982 -585 3 788 780 294 95 7 chr1 26721765 26721958 -170473474 + MTD LTR MaLR 13 208 -211 3 788 2823 86 17 22 chr1 26721958 26722364 -170473068 + L1_Mus1 LINE L1 6164 6567 0 3 788 780 294 95 7 chr1 26722364 26722454 -170472978 + MTD LTR MaLR 209 321 -98 3 788 14387 47 0 2 chr1 26722616 26724403 -170471029 + L1Md_F3 LINE L1 3802 5585 -298 3 788 7907 40 5 10 chr1 26724404 26725391 -170470041 + L1Md_F3 LINE L1 5587 6568 -16 3 788 222 37 0 0 chr1 26725440 26725467 -170469965 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 788 303 205 23 4 chr1 26725472 26725559 -170469873 + MTD LTR MaLR 285 383 -36 3 788 473 264 93 0 chr1 26726150 26726279 -170469153 - B1F1 SINE Alu -8 141 1 3 788 1644 61 13 21 chr1 26726297 26726530 -170468902 - L1Md_F2 LINE L1 0 6582 6352 3 788 2691 78 0 0 chr1 26726530 26726878 -170468554 + L1_Mm LINE L1 5423 5770 -113 3 788 21 0 0 0 chr1 26726918 26726939 -170468493 + AT_rich Low_complexity Low_complexity 1 21 0 3 788 355 343 70 12 chr1 26726990 26727161 -170468271 - B3A SINE B2 -16 182 2 3 788 2051 297 65 7 chr1 26727926 26727947 -170467485 - Lx6 LINE L1 -1 7459 7441 3 788 705 88 0 0 chr1 26727947 26728049 -170467383 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 788 2051 297 65 7 chr1 26728049 26728631 -170466801 - Lx6 LINE L1 -20 7440 6821 3 788 531 45 0 0 chr1 26729217 26729283 -170466149 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 788 215 163 20 20 chr1 26729283 26729333 -170466099 + GA-rich Low_complexity Low_complexity 2 51 0 3 788 22 56 0 0 chr1 26729401 26729437 -170465995 + AT_rich Low_complexity Low_complexity 1 36 0 3 788 207 0 0 0 chr1 26730056 26730079 -170465353 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 788 517 314 127 19 chr1 26730528 26730836 -170464596 - Lx9 LINE L1 -212 7432 7092 3 788 249 83 0 0 chr1 26730859 26730895 -170464537 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 788 459 176 0 0 chr1 26730905 26730996 -170464436 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 788 231 152 0 0 chr1 26731474 26731520 -170463912 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 3 788 1723 237 80 29 chr1 26731523 26731971 -170463461 - Lx5 LINE L1 -11 7039 6569 3 788 1978 147 64 3 chr1 26731968 26732310 -170463122 + Lx4A LINE L1 5630 5992 -1066 3 788 243 224 0 20 chr1 26732310 26732360 -170463072 + MLT1A LTR MaLR 201 249 -125 3 788 2155 52 59 0 chr1 26732673 26732959 -170462473 - L1Md_F2 LINE L1 -15 6567 6265 3 788 529 278 58 35 chr1 26733103 26733360 -170462072 - Lx9 LINE L1 -7 7637 7375 3 788 317 401 33 0 chr1 26733954 26734106 -170461326 - B3A SINE B2 -36 162 6 3 788 255 299 0 0 chr1 26735257 26735324 -170460108 + ID SINE ID 4 70 -154 3 788 343 249 56 83 chr1 26736601 26736781 -170458651 + RLTR42-int LTR ERVK 1224 1398 -4124 3 788 6197 51 23 2 chr1 26737121 26737908 -170457524 - L1Md_F2 LINE L1 -14 6568 5766 3 788 634 323 45 3 chr1 26738383 26738669 -170456763 - L1M2 LINE L1 -512 5788 5491 3 789 588 240 195 29 chr1 26743378 26743588 -170451844 - RMER4B LTR ERVK -8 577 333 3 789 632 98 0 10 chr1 26743588 26743691 -170451741 + (TCC)n Simple_repeat Simple_repeat 3 104 0 3 789 1444 206 34 0 chr1 26743694 26744015 -170451417 - RMER4B LTR ERVK -247 338 7 3 789 13363 179 32 8 chr1 26744718 26748449 -170446983 - Lx2B LINE L1 -5 6995 3162 3 789 250 287 45 68 chr1 26748749 26748962 -170446470 - MLT1D-int LTR MaLR -254 1235 1172 3 789 304 340 96 39 chr1 26749112 26749320 -170446112 - MLT2D LTR ERVL -110 304 85 3 789 1067 232 79 29 chr1 26749629 26749908 -170445524 - Lx6 LINE L1 -383 7077 6785 3 789 2682 64 9 0 chr1 26749969 26750311 -170445121 + L1Md_F2 LINE L1 6226 6570 -12 3 789 437 128 0 56 chr1 26750338 26750446 -170444986 + L1Md_F2 LINE L1 6479 6580 -2 3 789 411 350 58 58 chr1 26750470 26750782 -170444650 - MLT1D-int LTR MaLR -650 721 410 3 789 423 307 62 45 chr1 26750844 26751086 -170444346 - MLT1D-int LTR MaLR -1090 281 36 3 789 237 350 108 16 chr1 26751116 26751175 -170444257 - MLT1D LTR MaLR 0 505 441 3 789 1026 45 0 0 chr1 26751175 26751307 -170444125 + (CA)n Simple_repeat Simple_repeat 2 133 0 3 789 237 350 108 16 chr1 26751307 26751433 -170443999 - MLT1D LTR MaLR -65 440 304 3 789 337 341 95 58 chr1 26751465 26751951 -170443481 + L1MC5 LINE L1 6634 7137 -824 3 789 528 361 90 73 chr1 26752064 26752584 -170442848 - MT2A LTR ERVL -2 531 3 3 789 21 0 0 0 chr1 26752890 26752911 -170442521 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 372 43 0 0 chr1 26752991 26753037 -170442395 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 789 292 337 62 48 chr1 26753286 26753495 -170441937 + MIR SINE MIR 51 262 0 3 789 921 166 0 0 chr1 26753966 26754135 -170441297 + CT-rich Low_complexity Low_complexity 4 172 0 3 789 879 126 12 12 chr1 26754148 26754309 -170441123 - L1_Mus3 LINE L1 -3 6635 6475 3 789 291 233 50 0 chr1 26754353 26754413 -170441019 + B3A SINE B2 2 64 -134 3 789 292 240 105 24 chr1 26754429 26754553 -170440879 - Lx7 LINE L1 0 7696 7563 3 789 890 119 0 0 chr1 26754620 26754754 -170440678 + B1_Mus1 SINE Alu 15 148 0 3 789 3755 91 6 0 chr1 26754784 26755301 -170440131 + L1_Mus4 LINE L1 6103 6622 -14 3 789 397 344 115 39 chr1 26755610 26755940 -170439492 + MER82 DNA MER2_type 299 653 0 3 789 390 302 267 0 chr1 26756168 26756340 -170439092 - ID_B1 SINE B4 -1 223 6 3 789 504 0 0 0 chr1 26756352 26756408 -170439024 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 789 256 295 7 72 chr1 26756416 26756555 -170438877 + ORR1B1 LTR MaLR 9 138 -256 3 789 387 0 0 0 chr1 26756927 26756970 -170438462 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 789 426 303 47 29 chr1 26757487 26757868 -170437564 - L1M2 LINE L1 -2137 4006 3619 3 789 368 306 49 69 chr1 26758118 26758262 -170437170 + ID_B1 SINE B4 77 217 -7 3 789 714 340 70 49 chr1 26758517 26758861 -170436571 + MTD LTR MaLR 1 351 -68 3 789 5062 263 52 45 chr1 26758862 26759027 -170436405 + Lx7 LINE L1 6114 6286 -1410 3 789 2142 126 3 33 chr1 26759027 26759364 -170436068 + ORR1A2 LTR MaLR 1 327 0 3 789 5062 263 52 45 chr1 26759364 26760607 -170434825 + Lx7 LINE L1 6287 7535 -161 3 789 834 64 0 0 chr1 26760607 26760716 -170434716 + (TTTTC)n Simple_repeat Simple_repeat 2 110 0 3 789 5062 263 52 45 chr1 26760716 26760877 -170434555 + Lx7 LINE L1 7536 7695 -1 3 789 1225 20 13 0 chr1 26761435 26761587 -170433845 + (TC)n Simple_repeat Simple_repeat 1 154 0 3 789 1224 177 16 35 chr1 26761805 26762063 -170433369 + Lx LINE L1 6397 6649 -5 3 789 3550 96 11 2 chr1 26762068 26762609 -170432823 + MusHAL1 LINE L1 208 753 -1959 3 789 2136 137 123 18 chr1 26762606 26762920 -170432512 + MusHAL1 LINE L1 1266 1602 -1110 3 789 1852 121 24 48 chr1 26762920 26763250 -170432182 + RLTRETN_Mm LTR ERVK 1 322 0 3 789 2136 137 123 18 chr1 26763250 26763375 -170432057 + MusHAL1 LINE L1 1603 1751 -961 3 789 3469 184 15 23 chr1 26763372 26764118 -170431314 - L1_Mur2 LINE L1 -516 5361 4622 3 789 5470 114 6 5 chr1 26764107 26764953 -170430479 - L1_Mm LINE L1 -2997 2886 2039 3 789 1885 35 34 49 chr1 26764953 26765219 -170430213 - L1Md_F2 LINE L1 0 6582 6321 3 789 2392 150 23 9 chr1 26765228 26765666 -170429766 - L1_Mur2 LINE L1 -1244 4633 4190 3 789 2862 154 56 12 chr1 26765654 26766226 -170429206 + MusHAL1 LINE L1 1611 2207 -505 3 789 31456 167 19 23 chr1 26766226 26767487 -170427945 + L1Md_F2 LINE L1 361 1614 -4269 3 789 4716 8 0 0 chr1 26767487 26768011 -170427421 + L1Md_T LINE L1 6059 6582 0 3 789 31456 71 11 11 chr1 26768011 26771981 -170423451 + L1Md_F2 LINE L1 1615 5586 -297 3 789 7445 73 6 8 chr1 26771982 26772978 -170422454 + L1Md_F2 LINE L1 5588 6581 -1 3 789 4247 169 17 0 chr1 26772994 26773777 -170421655 + L1_Mur2 LINE L1 3390 4185 -1692 3 789 23 0 0 0 chr1 26774538 26774561 -170420871 + AT_rich Low_complexity Low_complexity 1 23 0 3 789 567 295 127 47 chr1 26775068 26775321 -170420111 + MTE2a LTR MaLR 51 323 -56 3 789 484 352 73 51 chr1 26775344 26775613 -170419819 + MTEa LTR MaLR 43 303 -76 3 789 369 192 41 0 chr1 26775614 26775687 -170419745 - Lx9 LINE L1 -1111 6533 6458 3 789 234 343 37 64 chr1 26776556 26776665 -170418767 + PB1D10 SINE Alu 5 110 -7 3 789 391 329 68 64 chr1 26777129 26777395 -170418037 - L1M2 LINE L1 -538 5762 5512 3 789 291 28 0 0 chr1 26777395 26777431 -170418001 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 789 1081 95 0 0 chr1 26777437 26777585 -170417847 - B1_Mus1 SINE Alu 0 148 1 3 789 424 307 48 43 chr1 26777585 26777881 -170417551 - L1M2 LINE L1 -789 5511 5192 3 789 1315 273 59 28 chr1 26777929 26778434 -170416998 - Lx9 LINE L1 -160 7484 6964 3 789 1604 274 65 20 chr1 26778431 26779073 -170416359 - Lx9 LINE L1 -1720 5924 5222 3 789 780 163 0 0 chr1 26779073 26779226 -170416206 + CT-rich Low_complexity Low_complexity 1 153 0 3 789 316 290 0 15 chr1 26779229 26779362 -170416070 - Lx9 LINE L1 -603 5244 5114 3 789 29 70 0 0 chr1 26781369 26781426 -170414006 + AT_rich Low_complexity Low_complexity 1 57 0 4 789 217 333 0 53 chr1 26781788 26781883 -170413549 + PB1D9 SINE Alu 20 109 -11 4 789 345 159 0 0 chr1 26782569 26782632 -170412800 + CT-rich Low_complexity Low_complexity 2 64 0 4 789 671 73 0 0 chr1 26782751 26782847 -170412585 - L1_Mus2 LINE L1 -2 6564 6469 4 789 413 296 117 92 chr1 26783259 26783627 -170411805 - MTE2a LTR MaLR 0 379 3 4 789 180 200 109 0 chr1 26783960 26784015 -170411417 - MIRb SINE MIR -41 227 167 4 789 230 301 13 27 chr1 26784903 26784921 -170410511 + B4A SINE B4 11 84 -208 4 789 286 246 18 0 chr1 26784921 26784978 -170410454 + ID4_ SINE ID 26 83 0 4 789 528 304 90 11 chr1 26785017 26785215 -170410217 + B3A SINE B2 5 215 -1 4 789 604 195 7 7 chr1 26785244 26785399 -170410033 + CT-rich Low_complexity Low_complexity 4 158 0 4 789 310 366 98 65 chr1 26785406 26785590 -170409842 - ID_B1 SINE B4 0 224 35 4 789 255 254 62 23 chr1 26785941 26786070 -170409362 - Lx9 LINE L1 -14 7630 7497 4 789 810 259 58 87 chr1 26786151 26786241 -170409191 - Lx9 LINE L1 -291 7353 7277 4 789 2054 138 3 6 chr1 26786241 26786568 -170408864 + ORR1A2 LTR MaLR 2 327 0 4 789 1754 271 156 46 chr1 26786568 26787394 -170408038 - Lx9 LINE L1 -368 7276 6349 4 789 990 244 97 8 chr1 26788244 26788512 -170406920 + Lx9 LINE L1 7150 7441 -203 4 789 612 125 0 0 chr1 26788524 26788620 -170406812 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 789 1591 189 70 64 chr1 26788674 26788722 -170406710 - ORR1C1 LTR MaLR -2 376 327 4 789 1307 40 6 11 chr1 26788722 26788899 -170406533 - L1Md_F2 LINE L1 -13 6569 6394 4 789 1591 189 70 64 chr1 26788899 26789223 -170406209 - ORR1C1 LTR MaLR -52 326 2 4 789 524 379 51 35 chr1 26789253 26789708 -170405724 - MER44B DNA MER2_type -172 533 36 4 789 24 53 0 0 chr1 26790706 26790744 -170404688 + AT_rich Low_complexity Low_complexity 1 38 0 4 789 475 141 11 11 chr1 26791108 26791201 -170404231 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 789 490 266 64 13 chr1 26791204 26791360 -170404072 - B2_Mm2 SINE B2 -23 172 9 4 789 1013 0 0 0 chr1 26791744 26791869 -170403563 + L1Md_T LINE L1 6458 6582 0 4 789 399 98 0 0 chr1 26792783 26792844 -170402588 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 789 299 295 0 13 chr1 26792849 26792928 -170402504 + PB1D10 SINE Alu 32 109 -8 4 789 243 0 0 0 chr1 26792932 26792959 -170402473 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 789 346 326 26 88 chr1 26793880 26794072 -170401360 - B3A SINE B2 -16 182 3 4 789 1097 279 72 3 chr1 26795315 26795646 -170399786 - ORR1D2 LTR MaLR -14 356 3 4 789 6417 60 5 4 chr1 26796517 26797338 -170398094 - RLTR13B2 LTR ERVK 0 822 1 4 789 245 29 0 29 chr1 26797802 26797837 -170397595 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 789 404 104 0 15 chr1 26798519 26798587 -170396845 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 4 789 1442 281 81 17 chr1 26799464 26800118 -170395314 + L1_Mur3 LINE L1 5175 5870 -10 4 789 28 0 0 0 chr1 26800135 26800163 -170395269 + AT_rich Low_complexity Low_complexity 1 28 0 4 789 438 302 102 102 chr1 26801535 26801854 -170393578 + L1MDa LINE L1 1929 2251 -4382 4 789 1181 34 0 0 chr1 26801854 26802000 -170393432 + B1_Mus2 SINE Alu 2 147 0 4 789 438 302 102 102 chr1 26802000 26802288 -170393144 + L1MDa LINE L1 2252 2536 -4097 4 789 540 275 12 24 chr1 26802699 26802863 -170392569 + Lx9 LINE L1 7108 7269 -375 4 789 2818 144 68 4 chr1 26803150 26803612 -170391820 - Lx3A LINE L1 -10 6971 6478 4 789 203 88 0 29 chr1 26803612 26803647 -170391785 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 789 2818 144 68 4 chr1 26803647 26803672 -170391760 - Lx3A LINE L1 -504 6477 6453 4 789 227 299 114 25 chr1 26804229 26804387 -170391045 + Lx8 LINE L1 5737 5908 -1565 4 789 888 360 78 5 chr1 26804798 26805209 -170390223 - MT2A LTR ERVL 0 533 93 4 789 303 250 109 21 chr1 26805197 26805313 -170390119 - MTE2a LTR MaLR -297 122 6 4 789 449 316 147 12 chr1 26805319 26805578 -170389854 + Lx8 LINE L1 6363 6656 -817 4 789 473 346 95 33 chr1 26805598 26805840 -170389592 + MTC LTR MaLR 18 274 -147 4 789 561 289 47 24 chr1 26806044 26806214 -170389218 + Lx7 LINE L1 6559 6732 -964 4 789 1101 284 63 14 chr1 26806228 26806657 -170388775 + Lx7 LINE L1 6961 7410 -286 4 789 210 250 0 0 chr1 26806659 26806719 -170388713 + T-rich Low_complexity Low_complexity 1 60 0 4 789 204 40 0 0 chr1 26806839 26806864 -170388568 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 789 317 62 0 20 chr1 26807216 26807265 -170388167 + (TATG)n Simple_repeat Simple_repeat 3 50 0 4 789 1086 75 0 26 chr1 26808310 26808461 -170386971 - B1_Mm SINE Alu 0 147 1 4 789 24 32 0 0 chr1 26808651 26808682 -170386750 + AT_rich Low_complexity Low_complexity 1 31 0 4 789 400 291 9 19 chr1 26809324 26809429 -170386003 - PB1D10 SINE Alu -13 104 1 4 789 266 306 0 65 chr1 26809361 26809438 -170385994 - ID_B1 SINE B4 -75 149 78 4 789 411 83 0 0 chr1 26809793 26809853 -170385579 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 789 21 36 0 0 chr1 26810141 26810169 -170385263 + AT_rich Low_complexity Low_complexity 1 28 0 4 789 340 358 39 22 chr1 26810353 26810533 -170384899 - RMER15 LTR ERVL -40 535 353 4 789 375 291 31 16 chr1 26811388 26811517 -170383915 - RMER5 LTR ERV1 -16 518 388 4 789 925 311 139 15 chr1 26811527 26811988 -170383444 + RMER5 LTR ERV1 1 518 -16 4 789 1390 264 43 31 chr1 26812053 26812467 -170382965 + MTD LTR MaLR 1 419 0 4 789 2731 262 28 6 chr1 26813090 26813777 -170381655 + Lx5 LINE L1 6346 7047 -3 4 789 805 204 67 13 chr1 26813940 26814178 -170381254 - Lx9 LINE L1 -2 7642 7392 4 789 764 137 26 0 chr1 26814849 26815002 -170380430 + (CA)n Simple_repeat Simple_repeat 1 157 0 4 789 246 289 13 0 chr1 26815534 26815610 -170379822 + L1M5 LINE L1 5535 5611 -551 4 789 277 227 0 33 chr1 26815806 26815897 -170379535 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 789 327 65 0 0 chr1 26815900 26815946 -170379486 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 4 789 282 364 95 32 chr1 26816067 26816257 -170379175 - MLT1A0 LTR MaLR -114 251 50 4 789 25 0 0 0 chr1 26816805 26816830 -170378602 + AT_rich Low_complexity Low_complexity 1 25 0 4 789 21 82 0 0 chr1 26818005 26818054 -170377378 + AT_rich Low_complexity Low_complexity 1 49 0 4 789 30 59 0 0 chr1 26818077 26818128 -170377304 + AT_rich Low_complexity Low_complexity 1 51 0 4 789 2188 204 7 2 chr1 26819744 26820186 -170375246 - RMER6A LTR ERVK 0 756 313 4 789 1119 95 0 0 chr1 26820585 26820732 -170374700 + B1_Mus2 SINE Alu 1 147 0 4 789 621 78 29 0 chr1 26821190 26821292 -170374140 + L1_Mus3 LINE L1 6528 6632 -6 4 789 224 30 0 29 chr1 26822443 26822477 -170372955 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 4 789 188 261 137 14 chr1 26823077 26823154 -170372278 + MIRc SINE MIR 78 159 -49 4 789 295 299 0 0 chr1 26823304 26823391 -170372041 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 789 230 21 0 78 chr1 26823528 26823579 -170371853 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 4 789 457 247 11 86 chr1 26823756 26823942 -170371490 - Lx9 LINE L1 -36 7608 7437 4 789 593 90 0 11 chr1 26824380 26824470 -170370962 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 789 638 58 29 9 chr1 26824489 26824594 -170370838 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 789 182 316 0 95 chr1 26824604 26824667 -170370765 + MIR SINE MIR 45 101 -161 4 789 21 57 0 0 chr1 26824705 26824740 -170370692 + AT_rich Low_complexity Low_complexity 1 35 0 4 789 486 49 0 0 chr1 26824798 26824859 -170370573 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 789 674 316 0 25 chr1 26824895 26825093 -170370339 + MTC LTR MaLR 175 367 -54 4 789 23 33 0 0 chr1 26825235 26825265 -170370167 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 252 254 16 0 chr1 26825640 26825703 -170369729 + (CATA)n Simple_repeat Simple_repeat 3 66 0 4 789 4505 159 115 33 chr1 26825719 26826414 -170369018 + RLTR22_Mur LTR ERVK 590 1306 -542 4 789 887 112 7 0 chr1 26826414 26826557 -170368875 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 789 4505 159 115 33 chr1 26826557 26826686 -170368746 + RLTR22_Mur LTR ERVK 1307 1502 -346 4 789 1038 96 13 0 chr1 26826686 26826843 -170368589 + L1_Mus1 LINE L1 6408 6566 -1 4 789 4505 169 148 53 chr1 26826843 26827102 -170368330 + RLTR22_Mur LTR ERVK 1455 1799 -9 4 789 233 234 0 0 chr1 26827112 26827159 -170368273 + RLTR33 LTR ERVK 632 678 0 4 789 509 290 79 18 chr1 26827449 26827614 -170367818 + B3A SINE B2 6 180 -18 4 789 25 0 0 0 chr1 26829082 26829107 -170366325 + AT_rich Low_complexity Low_complexity 1 25 0 4 789 438 139 0 0 chr1 26829840 26829912 -170365520 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 789 743 221 61 38 chr1 26831206 26831459 -170363973 + Lx2B LINE L1 6649 6932 -65 4 789 192 125 0 0 chr1 26831476 26831508 -170363924 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 4 789 21 0 0 0 chr1 26831543 26831564 -170363868 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 961 175 4 82 chr1 26831679 26831922 -170363510 - Lx3C LINE L1 -9 6967 6744 4 789 26 30 0 0 chr1 26833703 26833736 -170361696 + AT_rich Low_complexity Low_complexity 1 33 0 4 789 322 304 44 77 chr1 26834694 26834876 -170360556 - Tigger9a DNA Tigger -70 662 487 4 789 351 0 0 0 chr1 26835062 26835101 -170360331 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 789 451 287 73 44 chr1 26835102 26835306 -170360126 - Tigger9a DNA Tigger -508 224 15 4 789 432 0 0 0 chr1 26835830 26835878 -170359554 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 789 408 106 0 0 chr1 26835932 26835998 -170359434 + L1_Mus3 LINE L1 6556 6621 -17 4 789 932 70 8 0 chr1 26836000 26836129 -170359303 + (GAA)n Simple_repeat Simple_repeat 2 131 0 4 789 3712 143 110 26 chr1 26836129 26837097 -170358335 + Lx4A LINE L1 5400 6427 -631 4 789 483 254 150 13 chr1 26837118 26837345 -170358087 - Lx6 LINE L1 -579 6881 6449 4 789 459 0 0 0 chr1 26837352 26837403 -170358029 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 789 297 0 0 0 chr1 26838371 26838404 -170357028 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 789 426 20 0 0 chr1 26839189 26839240 -170356192 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 789 3794 120 23 10 chr1 26840048 26840653 -170354779 + L1_Mus3 LINE L1 6018 6630 -8 5 789 234 213 105 13 chr1 26841009 26841085 -170354347 + MT-int LTR MaLR 418 500 -598 5 789 1143 281 86 35 chr1 26842802 26843315 -170352117 + Lx7 LINE L1 5587 6125 -1571 5 789 213 390 0 83 chr1 26843329 26843438 -170351994 + B4A SINE B4 84 183 -109 5 789 642 13 0 0 chr1 26843463 26843538 -170351894 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 789 632 324 11 11 chr1 26843686 26843870 -170351562 + B3 SINE B2 6 189 -27 5 789 27 49 0 0 chr1 26844563 26844604 -170350828 + AT_rich Low_complexity Low_complexity 1 41 0 5 789 627 244 17 116 chr1 26844629 26844861 -170350571 - Lx2B LINE L1 0 7000 6792 5 789 506 57 14 0 chr1 26844873 26844943 -170350489 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 789 747 99 14 7 chr1 26844956 26845098 -170350334 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 5 789 934 290 46 36 chr1 26845227 26845556 -170349876 + RMER15 LTR ERVL 27 358 -217 5 789 912 79 0 0 chr1 26845796 26845922 -170349510 + (TG)n Simple_repeat Simple_repeat 2 127 0 5 789 327 322 113 0 chr1 26845947 26846062 -170349370 - RSINE1 SINE B4 -36 129 2 5 789 38 0 0 0 chr1 26846387 26846425 -170349007 + AT_rich Low_complexity Low_complexity 1 38 0 5 789 203 231 60 30 chr1 26847076 26847143 -170348289 - L3 LINE CR1 -3303 1186 1118 5 789 389 352 14 21 chr1 26847323 26847336 -170348096 - RSINE1 SINE B4 -10 155 143 5 789 405 0 0 0 chr1 26847336 26847381 -170348051 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 789 389 352 14 21 chr1 26847381 26847509 -170347923 - RSINE1 SINE B4 -23 142 16 5 789 22 35 0 0 chr1 26847915 26847944 -170347488 + AT_rich Low_complexity Low_complexity 1 29 0 5 789 633 150 14 35 chr1 26848366 26848511 -170346921 - Lx2B LINE L1 -3 6997 6856 5 789 1008 310 63 23 chr1 26848693 26849092 -170346340 + MTD LTR MaLR 3 417 -2 5 789 257 274 120 38 chr1 26849351 26849484 -170345948 - MLT2C2 LTR ERVL -313 151 8 5 789 1942 82 27 7 chr1 26849698 26849994 -170345438 - L1_Mus2 LINE L1 0 6566 6265 5 789 331 356 59 0 chr1 26850426 26850544 -170344888 - ID_B1 SINE B4 0 224 100 5 789 660 311 30 26 chr1 26850627 26850898 -170344534 - B4A SINE B4 -18 274 3 5 789 678 328 10 15 chr1 26851377 26851575 -170343857 + B3A SINE B2 1 197 -1 5 789 5538 133 13 12 chr1 26851845 26853411 -170342021 - L1VL2 LINE L1 -1982 1633 67 5 789 704 190 62 39 chr1 26853523 26853731 -170341701 + Lx7 LINE L1 7484 7696 0 5 789 7262 171 17 14 chr1 26853779 26855977 -170339455 + Lx LINE L1 4446 6646 -8 5 789 2250 281 77 106 chr1 26856076 26856358 -170339074 - Lx7 LINE L1 -329 7367 7078 5 789 1142 112 0 6 chr1 26856358 26856537 -170338895 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 789 2250 281 77 106 chr1 26856537 26857340 -170338092 - Lx7 LINE L1 -619 7077 6313 5 789 752 267 66 29 chr1 26857555 26858173 -170337259 + L1_Mur3 LINE L1 905 1552 -4328 5 789 14194 21 0 0 chr1 26858186 26859848 -170335584 + L1Md_T LINE L1 3925 5586 -297 5 789 8922 5 0 0 chr1 26859848 26860844 -170334588 + L1Md_T LINE L1 5587 6582 0 5 789 916 279 104 5 chr1 26860857 26861261 -170334171 + L1_Mur3 LINE L1 1603 2046 -3834 5 789 1963 242 35 25 chr1 26861261 26861895 -170333537 + L1_Mur3 LINE L1 2363 3001 -2879 5 789 195 100 0 0 chr1 26861895 26861925 -170333507 + (TAA)n Simple_repeat Simple_repeat 3 32 0 5 789 1963 242 35 25 chr1 26861925 26861972 -170333460 + L1_Mur3 LINE L1 3002 3050 -2830 5 789 23 33 0 0 chr1 26862443 26862473 -170332959 + AT_rich Low_complexity Low_complexity 1 30 0 5 789 24 0 0 0 chr1 26862910 26862934 -170332498 + AT_rich Low_complexity Low_complexity 1 24 0 5 789 623 128 9 0 chr1 26863369 26863478 -170331954 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 5 789 3569 108 4 13 chr1 26863586 26864130 -170331302 - L1_Mm LINE L1 -1278 4605 4067 5 789 6729 105 22 1 chr1 26864088 26865513 -170329919 + L1_Mus1 LINE L1 5111 6567 0 5 789 2478 177 79 2 chr1 26867579 26868050 -170327382 - RLTR20B2 LTR ERVK -53 507 1 5 789 362 346 62 8 chr1 26868081 26868209 -170327223 - ORR1D2 LTR MaLR -207 152 18 5 789 2142 313 91 102 chr1 26868223 26869483 -170325949 - ORR1D2-int LTR MaLR -1 1369 125 5 98 995 291 39 64 chr1 26869580 26869940 -170325492 - ORR1D2 LTR MaLR -19 351 1 5 790 1049 307 100 38 chr1 26870650 26870993 -170324439 + Lx8 LINE L1 6959 7332 -141 5 790 1810 52 0 0 chr1 26870993 26871222 -170324210 + L1_Mus1 LINE L1 6339 6567 0 5 790 1049 307 100 38 chr1 26871222 26871358 -170324074 + Lx8 LINE L1 7333 7468 -5 5 790 1097 76 7 0 chr1 26871479 26871624 -170323808 + B1_Mm SINE Alu 1 146 -1 5 790 268 105 53 0 chr1 26871629 26871686 -170323746 + A-rich Low_complexity Low_complexity 3 62 0 5 790 366 330 85 15 chr1 26871747 26871947 -170323485 + B3 SINE B2 1 214 -2 5 790 1011 198 61 5 chr1 26872212 26872425 -170323007 - URR1B DNA MER1_type 0 225 1 5 790 1345 201 131 12 chr1 26872768 26873111 -170322321 + ORR1C2 LTR MaLR 1 384 0 5 790 1918 64 55 33 chr1 26876118 26876393 -170319039 + L1_Mus1 LINE L1 6286 6566 -1 5 790 844 306 27 46 chr1 26876618 26876926 -170318506 - ORR1E LTR MaLR -8 371 46 5 790 381 43 0 0 chr1 26877466 26877513 -170317919 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 790 24 0 0 0 chr1 26877661 26877685 -170317747 + AT_rich Low_complexity Low_complexity 1 24 0 5 790 807 289 73 34 chr1 26878043 26878398 -170317034 - MTD LTR MaLR -16 380 1 5 790 22 0 0 0 chr1 26878534 26878556 -170316876 + AT_rich Low_complexity Low_complexity 1 22 0 5 790 1559 196 88 75 chr1 26878611 26878998 -170316434 + ORR1B1 LTR MaLR 1 392 -2 5 790 1260 88 0 6 chr1 26881124 26881295 -170314137 + B2_Mm2 SINE B2 14 183 -12 5 790 282 56 0 0 chr1 26881295 26881331 -170314101 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 790 397 206 10 10 chr1 26881781 26881884 -170313548 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 5 790 308 21 0 21 chr1 26882764 26882812 -170312620 - L1Md_T LINE L1 -2 6580 6534 5 790 58 28 0 0 chr1 26883101 26883173 -170312259 + AT_rich Low_complexity Low_complexity 1 72 0 5 790 599 249 73 44 chr1 26885257 26885463 -170309969 - B3 SINE B2 0 216 5 5 790 26 0 0 0 chr1 26885463 26885489 -170309943 + AT_rich Low_complexity Low_complexity 1 26 0 5 790 22 35 0 0 chr1 26885647 26885676 -170309756 + AT_rich Low_complexity Low_complexity 1 29 0 5 790 31 0 0 0 chr1 26886648 26886679 -170308753 + AT_rich Low_complexity Low_complexity 1 31 0 5 790 32910 82 10 7 chr1 26887077 26889021 -170306411 - L1Md_F2 LINE L1 0 6582 4627 5 790 245 0 86 0 chr1 26889021 26889056 -170306376 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 790 32910 82 5 3 chr1 26889056 26892419 -170303013 - L1Md_F2 LINE L1 -1257 4626 1265 5 790 273 300 24 30 chr1 26892567 26892732 -170302700 - L1MC1 LINE L1 -393 5940 5777 5 790 35 41 0 0 chr1 26892747 26892796 -170302636 + AT_rich Low_complexity Low_complexity 1 49 0 5 790 582 336 4 74 chr1 26892799 26893056 -170302376 + MTEa LTR MaLR 10 248 -131 5 790 197 179 0 0 chr1 26893211 26893250 -170302182 - L3b LINE CR1 -394 88 50 5 790 8908 20 2 8 chr1 26893620 26894707 -170300725 - L1Md_A LINE L1 0 6582 5554 5 790 297 255 40 60 chr1 26895081 26895231 -170300201 - L1M5 LINE L1 -434 5690 5544 5 790 890 191 141 39 chr1 26895723 26896097 -170299335 - Lx2B LINE L1 -9 6991 6580 5 790 204 277 0 12 chr1 26896498 26896582 -170298850 + A-rich Low_complexity Low_complexity 2 84 0 5 790 180 268 0 0 chr1 26896665 26896706 -170298726 - MER5A DNA MER1_type -116 73 33 5 790 851 230 15 10 chr1 26896861 26897059 -170298373 + Lx6 LINE L1 7253 7451 -9 5 790 333 0 0 0 chr1 26898196 26898233 -170297199 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 790 21 71 0 0 chr1 26898594 26898636 -170296796 + AT_rich Low_complexity Low_complexity 1 42 0 5 790 1048 164 94 30 chr1 26898868 26898894 -170296538 - Lx LINE L1 0 6654 6629 5 790 5815 60 1 16 chr1 26898894 26899651 -170295781 - L1Md_F2 LINE L1 0 6582 5837 5 790 1048 164 94 30 chr1 26899651 26899713 -170295719 - Lx LINE L1 -26 6628 6559 5 790 4311 155 47 10 chr1 26899713 26900493 -170294939 - RMER17D2 LTR ERVK 0 809 1 5 790 1048 164 94 30 chr1 26900493 26900636 -170294796 - Lx LINE L1 -96 6558 6409 5 790 730 323 114 16 chr1 26900943 26901311 -170294121 - Lx8 LINE L1 -403 7070 6667 5 790 219 36 0 0 chr1 26901334 26901362 -170294070 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 790 22 0 0 0 chr1 26901410 26901432 -170294000 + AT_rich Low_complexity Low_complexity 1 22 0 5 790 3598 71 0 70 chr1 26902159 26902570 -170292862 - L1_Mm LINE L1 -545 5338 4940 5 790 3269 53 0 2 chr1 26902570 26902984 -170292448 + L1Md_F3 LINE L1 6156 6568 -16 5 790 3598 71 0 70 chr1 26902984 26903117 -170292315 - L1_Mm LINE L1 -944 4939 4832 5 790 421 164 0 0 chr1 26903117 26903190 -170292242 - L1_Mm LINE L1 -1231 4652 4580 5 790 7185 60 5 1 chr1 26903177 26904332 -170291100 + L1Md_F2 LINE L1 5326 6486 -96 5 790 1010 121 0 6 chr1 26905373 26905540 -170289892 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 5 790 549 44 0 0 chr1 26905541 26905609 -170289823 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 5 790 338 286 0 0 chr1 26905980 26906057 -170289375 + MTE2b LTR MaLR 193 269 -110 5 790 441 0 0 0 chr1 26907083 26907132 -170288300 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 790 2584 174 124 56 chr1 26907192 26907764 -170287668 + RMER19C LTR ERVK 1 611 0 5 790 1063 75 0 52 chr1 26909155 26909309 -170286123 - B1_Mus1 SINE Alu -2 146 1 5 790 243 294 0 0 chr1 26910456 26910524 -170284908 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 5 790 226 250 27 40 chr1 26911772 26911835 -170283597 - ORR1C1 LTR MaLR 0 384 322 5 790 768 167 6 53 chr1 26911835 26912006 -170283426 + Lx3A LINE L1 6809 6971 -10 5 790 226 250 27 40 chr1 26912006 26912017 -170283415 - ORR1C1 LTR MaLR -63 321 311 5 790 263 28 0 27 chr1 26912573 26912610 -170282822 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 790 881 290 33 72 chr1 26912900 26913231 -170282201 - ORR1C1 LTR MaLR -60 318 1 5 790 216 0 0 0 chr1 26913444 26913468 -170281964 + (TCTCTG)n Simple_repeat Simple_repeat 4 27 0 5 790 3959 260 45 91 chr1 26913598 26913741 -170281691 - ORR1C1-int LTR MaLR -31 1339 1204 5 790 3376 110 4 2 chr1 26913741 26914233 -170281199 + L1_Mus3 LINE L1 6140 6632 -6 6 790 3959 260 45 91 chr1 26914233 26914559 -170280873 - ORR1C1-int LTR MaLR -167 1203 890 5 790 868 56 0 8 chr1 26914559 26914685 -170280747 - L1Md_F2 LINE L1 -10 6572 6448 6 790 3959 260 45 91 chr1 26914685 26915579 -170279853 - ORR1C1-int LTR MaLR -481 889 37 5 790 3310 35 5 0 chr1 26915585 26915979 -170279453 + MTA_Mm LTR MaLR 1 396 0 6 790 1970 207 24 35 chr1 26916013 26916439 -170278993 - MTC LTR MaLR 0 421 1 6 790 1067 197 34 21 chr1 26917185 26917424 -170278008 + ORR1A4 LTR MaLR 88 329 0 6 790 23 0 0 0 chr1 26917516 26917539 -170277893 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 29 47 0 0 chr1 26917627 26917670 -170277762 + AT_rich Low_complexity Low_complexity 1 43 0 6 790 2324 49 3 0 chr1 26917880 26918168 -170277264 - L1Md_F2 LINE L1 -15 6567 6279 6 790 728 332 55 28 chr1 26918666 26919100 -170276332 + RMER15-int LTR ERVL 463 908 -4091 6 790 289 143 41 0 chr1 26920265 26920314 -170275118 + RMER6A LTR ERVK 74 124 -632 6 790 583 289 111 36 chr1 26920323 26920559 -170274873 - RMER1B Other Other -474 592 353 6 790 517 331 5 10 chr1 26920709 26920901 -170274531 - B3A SINE B2 -4 194 4 6 790 21 0 0 0 chr1 26921166 26921187 -170274245 + AT_rich Low_complexity Low_complexity 1 21 0 6 790 257 333 12 12 chr1 26921794 26921879 -170273553 + PB1D7 SINE Alu 12 96 -24 6 790 267 282 14 27 chr1 26922513 26922586 -170272846 + PB1D10 SINE Alu 45 116 -1 6 790 247 198 56 9 chr1 26922604 26922711 -170272721 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 790 785 56 9 0 chr1 26922711 26922818 -170272614 + (CATATA)n Simple_repeat Simple_repeat 4 111 0 6 790 449 316 15 15 chr1 26922854 26922989 -170272443 + B3A SINE B2 17 151 -47 6 790 3696 189 60 75 chr1 26922989 26923905 -170271527 + RMER19B LTR ERVK 1 902 0 6 790 381 285 41 0 chr1 26924047 26924170 -170271262 + L1_Mur3 LINE L1 61 188 -7540 6 790 10829 55 2 2 chr1 26924171 26926253 -170269179 - L1Md_F2 LINE L1 -8 6574 4493 6 790 322 348 14 29 chr1 26926267 26926474 -170268958 + L1_Mur3 LINE L1 230 433 -7295 6 790 1639 229 36 47 chr1 26926490 26927512 -170267920 + L1_Mur3 LINE L1 818 2355 -3525 6 790 456 221 31 0 chr1 26927507 26927634 -170267798 - L1_Mur2 LINE L1 -5802 910 780 6 790 404 240 25 0 chr1 26927688 26927809 -170267623 + L1_Mur3 LINE L1 2591 2714 -3166 6 790 2161 241 6 0 chr1 26927777 26928316 -170267116 + L1_Mur3 LINE L1 4786 5327 -553 6 790 1531 271 66 29 chr1 26928313 26928800 -170266632 + Lx6 LINE L1 6956 7460 0 6 790 281 299 163 38 chr1 26929207 26929391 -170266041 - B3 SINE B2 -6 210 4 6 790 4786 183 49 15 chr1 26929603 26930580 -170264852 - Lx2 LINE L1 0 6997 5988 6 790 396 337 65 37 chr1 26930827 26931148 -170264284 + L1MCa LINE L1 836 1165 -5343 6 790 240 256 92 17 chr1 26931214 26931333 -170264099 + L1MCa LINE L1 1299 1426 -4991 6 790 316 258 44 22 chr1 26931416 26931507 -170263925 + HAL1 LINE L1 875 967 -1540 6 790 254 259 8 41 chr1 26931580 26931701 -170263731 + L1MCa LINE L1 1640 1756 -4661 6 790 543 69 0 0 chr1 26931784 26931856 -170263576 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 790 5864 138 44 15 chr1 26932181 26933175 -170262257 - RLTR13D2 LTR ERVK 0 1023 1 6 790 601 371 37 13 chr1 26933766 26934148 -170261284 - Lx8 LINE L1 -736 6737 6347 6 790 645 339 73 41 chr1 26934154 26934618 -170260814 + Lx8 LINE L1 6759 7237 -236 6 790 815 82 30 0 chr1 26934649 26934783 -170260649 + (TC)n Simple_repeat Simple_repeat 1 138 0 6 790 192 97 0 0 chr1 26934850 26934881 -170260551 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 790 1205 329 81 28 chr1 26936319 26937175 -170258257 + Tigger6a DNA MER2_type 34 934 -149 6 790 180 176 0 0 chr1 26937815 26937849 -170257583 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 790 186 133 0 0 chr1 26937856 26937886 -170257546 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 790 286 306 40 10 chr1 26937901 26938000 -170257432 - RSINE1 SINE B4 -20 145 44 6 790 21 57 0 0 chr1 26938047 26938082 -170257350 + AT_rich Low_complexity Low_complexity 1 35 0 6 790 231 341 119 15 chr1 26938236 26938370 -170257062 - Kanga1b DNA Tc2 -442 337 190 6 790 24 32 0 0 chr1 26938627 26938658 -170256774 + AT_rich Low_complexity Low_complexity 1 31 0 6 790 295 340 208 21 chr1 26938672 26938912 -170256520 - B4A SINE B4 0 292 8 6 790 625 11 53 0 chr1 26939321 26939415 -170256017 + (TC)n Simple_repeat Simple_repeat 1 99 0 6 790 519 282 0 7 chr1 26939424 26939567 -170255865 + B1_Mus1 SINE Alu 3 144 -4 6 790 222 37 0 0 chr1 26939584 26939611 -170255821 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 6 790 22 35 0 0 chr1 26939629 26939658 -170255774 + AT_rich Low_complexity Low_complexity 1 29 0 6 790 402 85 0 0 chr1 26939771 26939830 -170255602 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 790 216 0 0 0 chr1 26939830 26939853 -170255579 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 790 414 0 0 0 chr1 26940463 26940509 -170254923 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 790 33 73 0 0 chr1 26941861 26941929 -170253503 + AT_rich Low_complexity Low_complexity 1 68 0 6 790 395 283 25 38 chr1 26942764 26942922 -170252510 - RLTR14 LTR ERV1 0 382 227 6 790 22 35 0 0 chr1 26943235 26943264 -170252168 + AT_rich Low_complexity Low_complexity 1 29 0 6 790 183 100 0 0 chr1 26943657 26943687 -170251745 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 6 790 315 104 0 0 chr1 26943695 26943743 -170251689 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 6 790 8661 164 23 12 chr1 26943859 26945750 -170249682 - Lx2B LINE L1 -5 6995 5116 6 790 1123 75 0 0 chr1 26945750 26945897 -170249535 - B1_Mus1 SINE Alu 0 148 2 6 790 8661 176 25 27 chr1 26945897 26946854 -170248578 - Lx2B LINE L1 -771 5115 4134 6 790 10023 175 33 28 chr1 26946850 26948428 -170247004 - Lx2B LINE L1 -2497 3389 1839 6 790 2196 136 91 16 chr1 26948428 26948802 -170246630 + RLTR9D LTR ERVK 1 402 -1 6 790 10023 175 33 28 chr1 26948802 26948927 -170246505 - Lx2B LINE L1 -4048 1838 1695 6 790 234 0 0 0 chr1 26948927 26948953 -170246479 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 6 790 10023 178 80 24 chr1 26948953 26949627 -170245805 - Lx2B LINE L1 -4192 1694 933 6 790 2146 132 0 0 chr1 26950374 26950693 -170244739 + ORR1A2 LTR MaLR 1 319 -8 6 790 359 352 18 44 chr1 26950929 26951144 -170244288 + B3A SINE B2 9 216 0 6 790 30 93 0 0 chr1 26951500 26951586 -170243846 + AT_rich Low_complexity Low_complexity 1 86 0 6 790 451 70 0 27 chr1 26951658 26951732 -170243700 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 790 2178 273 73 31 chr1 26952653 26953600 -170241832 + L1_Mur3 LINE L1 15 786 -6926 6 790 3276 269 61 34 chr1 26953980 26954885 -170240547 - RLTR42-int LTR ERVK -44 5478 4535 6 790 315 49 0 0 chr1 26954885 26954926 -170240506 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 790 3276 269 61 34 chr1 26954926 26955157 -170240275 - RLTR42-int LTR ERVK -988 4534 4312 6 790 1089 209 62 12 chr1 26955155 26955412 -170240020 - RLTR42-int LTR ERVK -3010 2512 2243 6 790 333 285 83 38 chr1 26955444 26955601 -170239831 + RMER20A LTR ERVK 207 370 -146 6 790 229 337 81 119 chr1 26955692 26955877 -170239555 + RMER20A LTR ERVK 422 599 -28 6 790 1487 0 17 0 chr1 26956073 26956246 -170239186 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 6 790 372 208 47 9 chr1 26956316 26956423 -170239009 - RLTR42-int LTR ERVK -4307 1215 1105 6 790 330 342 30 43 chr1 26957465 26957700 -170237732 + RLTR4_MM-int LTR ERV1 1532 1763 -5793 6 790 480 331 82 40 chr1 26957904 26958282 -170237150 + RLTR4_MM-int LTR ERV1 2033 2426 -5130 6 790 206 32 32 0 chr1 26958469 26958500 -170236932 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 790 1305 369 39 29 chr1 26958608 26959933 -170235499 + RLTR4_MM-int LTR ERV1 2692 4028 -3573 6 790 360 362 14 9 chr1 26959925 26960145 -170235287 + MuRRS4-int LTR ERV1 2808 3028 -2035 6 790 259 258 15 0 chr1 26961815 26961881 -170233551 + RLTR19-int LTR ERVK 6071 6137 0 6 790 782 273 128 99 chr1 26961902 26962377 -170233055 + RLTR19 LTR ERVK 11 499 0 6 790 1790 209 0 135 chr1 26962458 26962946 -170232486 - RLTR24 LTR ERV1 -107 422 1 6 790 1059 117 0 0 chr1 26963378 26963540 -170231892 + (TTCTCC)n Simple_repeat Simple_repeat 1 162 0 6 790 1305 83 0 0 chr1 26963540 26963720 -170231712 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 790 689 194 6 0 chr1 26963722 26963882 -170231550 + CT-rich Low_complexity Low_complexity 3 163 0 6 790 1218 90 0 0 chr1 26963886 26964064 -170231368 + (TCC)n Simple_repeat Simple_repeat 3 180 0 6 790 355 143 16 16 chr1 26964064 26964128 -170231304 + CT-rich Low_complexity Low_complexity 2 65 0 6 790 1558 283 33 5 chr1 26964537 26964960 -170230472 + MurERV4-int LTR ERVK 563 997 -4263 6 790 288 319 68 25 chr1 26964975 26965081 -170230351 + RMER4B LTR ERVK 388 501 -110 6 790 548 40 13 0 chr1 26965081 26965156 -170230276 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 6 790 356 260 10 46 chr1 26965156 26965266 -170230166 + RMER4B LTR ERVK 467 571 -14 6 790 353 22 22 0 chr1 26965634 26965680 -170229752 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 6 790 200 111 0 27 chr1 26965932 26965969 -170229463 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 790 459 0 0 0 chr1 26967600 26967651 -170227781 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 790 405 0 0 0 chr1 26967651 26967695 -170227737 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 790 2806 159 62 17 chr1 26967814 26968344 -170227088 - RLTR20B2 LTR ERVK -3 557 4 6 790 25 51 0 0 chr1 26968488 26968527 -170226905 + AT_rich Low_complexity Low_complexity 1 39 0 6 790 1414 111 14 0 chr1 26968599 26968807 -170226625 - L1_Mus3 LINE L1 -495 6143 5933 6 790 3344 84 9 2 chr1 26968807 26969272 -170226160 + L1_Mus3 LINE L1 6156 6623 -15 6 790 699 12 0 0 chr1 26969272 26969352 -170226080 + (GAA)n Simple_repeat Simple_repeat 3 82 0 6 790 339 236 0 113 chr1 26969371 26969487 -170225945 - RMER17B LTR ERVK 0 958 854 6 790 3788 69 6 0 chr1 26969487 26969982 -170225450 - L1Md_F2 LINE L1 0 6582 6085 6 790 1666 108 12 0 chr1 26969985 26970244 -170225188 - BGLII LTR ERVK -149 272 11 6 790 703 162 0 0 chr1 26970242 26970347 -170225085 - RLTR26 LTR ERVK -537 105 1 6 790 641 76 0 11 chr1 26970453 26970546 -170224886 + (TTTTC)n Simple_repeat Simple_repeat 3 94 0 6 790 1069 74 0 0 chr1 26970561 26970696 -170224736 - B1_Mus1 SINE Alu -12 136 2 6 790 219 157 0 0 chr1 26972496 26972547 -170222885 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 6 790 23 0 0 0 chr1 26972782 26972805 -170222627 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 1828 136 106 6 chr1 26972892 26973240 -170222192 - RLTR9A2 LTR ERVK 0 383 1 6 790 21 36 0 0 chr1 26973335 26973363 -170222069 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 27 49 0 0 chr1 26973524 26973565 -170221867 + AT_rich Low_complexity Low_complexity 1 41 0 6 790 182 163 41 0 chr1 26973573 26973622 -170221810 + (ATGGTG)n Simple_repeat Simple_repeat 1 51 0 6 790 317 43 21 0 chr1 26973637 26973684 -170221748 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 790 765 224 37 27 chr1 26973694 26973882 -170221550 + RMER15 LTR ERVL 12 201 -374 6 790 948 139 64 0 chr1 26973893 26973957 -170221475 - L1_Mur1 LINE L1 -1145 4741 4678 7 790 420 20 0 0 chr1 26973957 26974006 -170221426 + (TTA)n Simple_repeat Simple_repeat 3 51 0 7 790 948 139 64 0 chr1 26974006 26974113 -170221319 - L1_Mur1 LINE L1 -1209 4677 4560 7 790 529 356 26 0 chr1 26974755 26974946 -170220486 + B3A SINE B2 1 196 -2 7 790 637 338 59 5 chr1 26975892 26976112 -170219320 - B4A SINE B4 -18 274 43 7 790 24 0 0 0 chr1 26976181 26976205 -170219227 + AT_rich Low_complexity Low_complexity 1 24 0 7 790 576 314 15 49 chr1 26976212 26976416 -170219016 - B3A SINE B2 0 198 2 7 790 356 336 32 115 chr1 26976859 26977106 -170218326 - B4A SINE B4 -53 239 2 7 790 21 71 0 0 chr1 26977299 26977341 -170218091 + AT_rich Low_complexity Low_complexity 1 42 0 7 790 25 0 0 0 chr1 26978020 26978045 -170217387 + AT_rich Low_complexity Low_complexity 1 25 0 7 790 538 317 20 79 chr1 26978197 26978242 -170217190 - B3A SINE B2 0 198 167 7 790 273 29 0 0 chr1 26978242 26978276 -170217156 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 790 538 317 20 79 chr1 26978276 26978432 -170217000 - B3A SINE B2 -32 166 9 7 790 255 316 56 70 chr1 26979309 26979595 -170215837 + Lx9 LINE L1 7319 7600 -44 7 790 21 0 0 0 chr1 26980344 26980365 -170215067 + AT_rich Low_complexity Low_complexity 1 21 0 7 790 22 0 0 0 chr1 26980475 26980497 -170214935 + AT_rich Low_complexity Low_complexity 1 22 0 7 790 408 88 0 0 chr1 26980852 26980909 -170214523 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 790 31 26 0 0 chr1 26981359 26981397 -170214035 + AT_rich Low_complexity Low_complexity 1 38 0 7 790 348 83 0 0 chr1 26983096 26983144 -170212288 + (A)n Simple_repeat Simple_repeat 1 48 0 7 790 405 345 58 83 chr1 26983635 26983713 -170211719 - MLT1B LTR MaLR -6 384 319 7 790 227 54 27 0 chr1 26983713 26983750 -170211682 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 790 405 345 58 83 chr1 26983750 26983997 -170211435 - MLT1B LTR MaLR -72 318 67 7 790 540 0 0 0 chr1 26984007 26984067 -170211365 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 790 369 75 0 0 chr1 26985933 26985986 -170209446 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 790 245 317 0 37 chr1 26986144 26986252 -170209180 + B1_Mus2 SINE Alu 42 145 -2 7 790 572 45 0 0 chr1 26986257 26986323 -170209109 + L1Md_F2 LINE L1 5521 5586 -297 7 790 7684 68 1 4 chr1 26986324 26987321 -170208111 + L1Md_F2 LINE L1 5588 6581 -1 7 790 29 70 0 0 chr1 26987437 26987494 -170207938 + AT_rich Low_complexity Low_complexity 1 57 0 7 790 30 0 0 0 chr1 26987661 26987691 -170207741 + AT_rich Low_complexity Low_complexity 1 30 0 7 790 562 292 26 109 chr1 26987706 26987898 -170207534 - B3A SINE B2 -22 176 1 7 790 1063 264 87 4 chr1 26988033 26988310 -170207122 - MTE2b LTR MaLR -14 365 66 7 790 192 77 0 0 chr1 26988703 26988729 -170206703 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 7 790 364 338 7 48 chr1 26988729 26988867 -170206565 - B1_Mur1 SINE Alu -7 142 10 7 790 507 17 0 0 chr1 26988878 26988938 -170206494 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 790 32 36 0 18 chr1 26989227 26989259 -170206173 + AT_rich Low_complexity Low_complexity 1 32 0 7 790 1979 63 16 0 chr1 26989259 26989513 -170205919 + L1_Mus1 LINE L1 6308 6565 -2 7 790 32 36 0 18 chr1 26989513 26989537 -170205895 + AT_rich Low_complexity Low_complexity 1 24 0 7 790 626 339 31 5 chr1 26989896 26990089 -170205343 + B3 SINE B2 6 203 -13 7 790 369 0 0 0 chr1 26990101 26990142 -170205290 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 790 22 35 0 0 chr1 26990892 26990921 -170204511 + AT_rich Low_complexity Low_complexity 1 29 0 7 790 207 0 0 0 chr1 26991408 26991431 -170204001 + (T)n Simple_repeat Simple_repeat 1 23 0 7 790 5143 113 17 1 chr1 26991453 26992226 -170203206 - L1_Mus1 LINE L1 0 6567 5783 7 790 1764 56 0 4 chr1 26992221 26992454 -170202978 - L1Md_F2 LINE L1 0 6582 6351 7 790 1633 40 25 0 chr1 26992454 26992656 -170202776 + L1Md_F2 LINE L1 6142 6348 -234 7 790 1573 163 20 24 chr1 26992695 26993025 -170202407 + Lx3A LINE L1 6620 6886 -95 7 790 360 344 83 8 chr1 26993105 26993237 -170202195 - RSINE1 SINE B4 -18 147 6 7 790 22 0 0 0 chr1 26993463 26993485 -170201947 + AT_rich Low_complexity Low_complexity 1 22 0 7 790 24 53 0 0 chr1 26993982 26994020 -170201412 + AT_rich Low_complexity Low_complexity 1 38 0 7 790 508 302 31 0 chr1 26994228 26994357 -170201075 + ID_B1 SINE B4 86 218 -6 7 790 1483 116 136 0 chr1 26994841 26995091 -170200341 - L1_Mus3 LINE L1 -11 6627 6344 7 790 1799 49 0 0 chr1 26995089 26995313 -170200119 + L1_Mus2 LINE L1 5696 5919 -647 7 790 2783 180 10 2 chr1 26995298 26995783 -170199649 - Lx3B LINE L1 -257 6716 6228 7 790 16466 3 0 0 chr1 26995791 26998335 -170197097 - L1Md_A LINE L1 0 6582 4039 7 790 3103 128 81 9 chr1 26998308 26998852 -170196580 - Lx3B LINE L1 -718 6255 5673 7 790 5040 113 103 1 chr1 26998850 27000000 -170195432 - Lx3_Mus LINE L1 -285 6724 5458 7 790 1973 139 111 18 chr1 27000026 27000690 -170194742 - L1_Mur1 LINE L1 -1932 3954 3229 1 98 2462 87 74 0 chr1 27000691 27001058 -170194374 + MTB LTR MaLR 7 400 0 2 791 2612 85 7 37 chr1 27001058 27001473 -170193959 + MTB-int LTR MaLR 1 391 -707 2 791 7300 11 0 0 chr1 27001473 27002301 -170193131 + L1Md_A LINE L1 4759 5586 -297 3 791 8718 19 0 0 chr1 27002301 27003297 -170192135 + L1Md_A LINE L1 5587 6582 0 3 791 4500 117 14 7 chr1 27003304 27004021 -170191411 + MTB-int LTR MaLR 377 1098 0 2 791 2594 115 23 0 chr1 27004021 27004412 -170191020 + MTB LTR MaLR 1 400 0 2 791 4903 105 4 12 chr1 27004412 27005130 -170190302 - L1_Mur1 LINE L1 -2588 3298 2587 4 791 2661 59 18 12 chr1 27005130 27005472 -170189960 + ORR1A1 LTR MaLR 1 344 -2 5 791 4903 105 4 12 chr1 27005472 27005498 -170189934 - L1_Mur1 LINE L1 -3300 2586 2560 4 791 2082 174 18 59 chr1 27005498 27005710 -170189722 + BGLII_Mus LTR ERVK 1 202 -220 6 791 552 30 0 0 chr1 27005710 27005776 -170189656 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 791 2082 174 18 59 chr1 27005776 27005867 -170189565 + BGLII_Mus LTR ERVK 203 287 -135 6 791 3515 31 0 0 chr1 27005867 27006285 -170189147 - L1Md_A LINE L1 0 6582 6165 8 791 2082 174 18 59 chr1 27006285 27006420 -170189012 + BGLII_Mus LTR ERVK 288 421 -1 6 791 825 104 2 5 chr1 27006781 27006917 -170188515 + B1_Mus1 SINE Alu 2 135 -15 9 791 699 120 0 0 chr1 27006918 27007026 -170188406 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 791 443 207 89 50 chr1 27007068 27007279 -170188153 + RMER3D-int LTR ERVK 680 935 -1907 1 791 492 190 51 17 chr1 27007314 27007432 -170188000 + RMER3D-int LTR ERVK 489 610 -2232 1 791 4480 224 91 57 chr1 27007453 27009220 -170186212 + RMER3D-int LTR ERVK 1014 2841 -1 1 791 2591 122 19 28 chr1 27009221 27009643 -170185789 + BGLII_Mus LTR ERVK 1 418 -4 1 791 4925 115 14 0 chr1 27009646 27010404 -170185028 - L1_Mur1 LINE L1 -3323 2563 1795 1 791 209 208 0 0 chr1 27010767 27010815 -170184617 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1 791 665 299 63 42 chr1 27010980 27011266 -170184166 + B4 SINE B4 1 292 0 1 791 254 170 21 0 chr1 27012026 27012073 -170183359 - L1MC1 LINE L1 -235 6098 6051 1 791 654 281 57 10 chr1 27012103 27012297 -170183135 + B3 SINE B2 2 204 -12 1 791 576 0 0 0 chr1 27013433 27013497 -170181935 + (CACAG)n Simple_repeat Simple_repeat 1 64 0 1 791 492 348 44 36 chr1 27014066 27014554 -170180878 + L1M4c LINE L1 1288 1925 -4553 1 791 275 258 97 32 chr1 27014628 27014752 -170180680 + L1MCa LINE L1 83 214 -6294 2 791 440 279 187 7 chr1 27015298 27015453 -170179979 - MTEb LTR MaLR -4 375 193 2 791 44 88 0 0 chr1 27015676 27015790 -170179642 + AT_rich Low_complexity Low_complexity 1 114 0 2 791 25 0 0 0 chr1 27015815 27015840 -170179592 + AT_rich Low_complexity Low_complexity 1 25 0 2 791 902 91 0 0 chr1 27015945 27016066 -170179366 - 5S rRNA rRNA 0 121 1 2 791 802 325 86 75 chr1 27016231 27016860 -170178572 - Lx9 LINE L1 -188 7456 6821 2 791 222 385 26 0 chr1 27017770 27017848 -170177584 + RSINE1 SINE B4 2 81 -84 2 791 533 356 37 28 chr1 27017962 27018176 -170177256 + B3 SINE B2 1 216 0 2 791 403 245 194 0 chr1 27018190 27018288 -170177144 - B3A SINE B2 -80 118 2 2 791 325 293 86 58 chr1 27018358 27018720 -170176712 + L1M4 LINE L1 3623 3994 -2146 2 791 386 286 62 36 chr1 27018808 27019000 -170176432 + L1M4 LINE L1 4130 4326 -1820 2 791 236 372 92 21 chr1 27019047 27019604 -170175828 + L1M2 LINE L1 4587 5182 -961 3 791 456 19 0 0 chr1 27019855 27019908 -170175524 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 791 323 353 148 14 chr1 27020150 27020575 -170174857 + L1MD LINE L1 5273 5754 -2241 3 791 678 25 0 0 chr1 27020727 27020807 -170174625 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 791 423 56 0 0 chr1 27020807 27020860 -170174572 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 791 451 264 40 40 chr1 27021518 27021743 -170173689 + L1MC3 LINE L1 7449 7673 -112 3 791 342 0 0 0 chr1 27021785 27021823 -170173609 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 791 312 70 0 0 chr1 27021823 27021866 -170173566 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 791 674 12 12 0 chr1 27021867 27021950 -170173482 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 3 791 297 0 0 0 chr1 27022153 27022186 -170173246 + (A)n Simple_repeat Simple_repeat 1 33 0 3 791 250 316 38 12 chr1 27022387 27022467 -170172965 + LTRIS4 LTR ERV1 376 457 -50 4 791 450 0 0 0 chr1 27022488 27022538 -170172894 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 4 791 23 54 0 0 chr1 27023115 27023152 -170172280 + AT_rich Low_complexity Low_complexity 1 37 0 4 791 22 35 0 0 chr1 27023245 27023274 -170172158 + AT_rich Low_complexity Low_complexity 1 29 0 4 791 237 186 0 0 chr1 27023323 27023393 -170172039 + T-rich Low_complexity Low_complexity 1 70 0 4 791 939 118 14 7 chr1 27023395 27023540 -170171892 - B1_Mm SINE Alu 0 147 2 4 791 869 318 44 25 chr1 27023772 27024139 -170171293 + Lx9 LINE L1 6474 6847 -797 4 791 915 152 87 30 chr1 27024186 27024416 -170171016 + MYSERV16_I-int LTR ERVK 2081 2323 -3 4 791 1429 229 71 139 chr1 27024419 27024981 -170170451 + RLTR20B3 LTR ERVK 1 524 -3 4 791 23 54 0 0 chr1 27025156 27025193 -170170239 + AT_rich Low_complexity Low_complexity 1 37 0 4 791 21 36 0 0 chr1 27025873 27025901 -170169531 + AT_rich Low_complexity Low_complexity 1 28 0 4 791 1142 237 165 22 chr1 27026208 27026566 -170168866 - RMER4B LTR ERVK -171 414 6 5 791 2989 20 3 3 chr1 27026897 27027243 -170168189 - ORR1A0 LTR MaLR 0 346 1 5 791 2825 170 68 13 chr1 27027287 27027829 -170167603 - Lx2B LINE L1 -1 6999 6428 5 791 4872 88 7 55 chr1 27027866 27028637 -170166795 - L1Md_F2 LINE L1 -1084 4799 4066 5 791 5768 82 1 3 chr1 27028639 27029410 -170166022 + L1Md_F2 LINE L1 4816 5585 -298 5 791 7619 73 0 4 chr1 27029411 27030399 -170165033 + L1Md_F2 LINE L1 5587 6570 -12 5 791 526 301 43 29 chr1 27030694 27030903 -170164529 - Lx8 LINE L1 -17 7456 7245 5 791 292 237 29 176 chr1 27030904 27031109 -170164323 - Tigger5 DNA MER2_type -21 2385 2211 5 791 878 153 94 6 chr1 27031111 27031282 -170164150 - B2_Mm2 SINE B2 -8 187 2 5 791 324 83 0 0 chr1 27031619 27031667 -170163765 + (T)n Simple_repeat Simple_repeat 1 48 0 5 791 912 36 10 7 chr1 27031668 27031799 -170163633 - B1_Mm SINE Alu 0 149 23 5 791 3554 272 71 75 chr1 27031799 27032380 -170163052 - Lx5 LINE L1 -35 7015 6451 5 791 240 35 0 0 chr1 27032380 27032409 -170163023 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 791 4016 246 45 33 chr1 27032409 27034008 -170161424 - Lx5 LINE L1 -600 6450 4819 5 791 5555 224 65 16 chr1 27034008 27034878 -170160554 - Lx5 LINE L1 -2904 2976 2057 5 791 414 0 0 0 chr1 27034878 27034924 -170160508 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 791 5555 232 61 35 chr1 27034924 27036096 -170159336 - Lx5 LINE L1 -3824 2056 888 5 791 7165 75 58 3 chr1 27036230 27037200 -170158232 - RLTR13D5 LTR ERVK 0 1023 1 6 791 10874 134 33 3 chr1 27038539 27040385 -170155047 - L1_Mus3 LINE L1 -7 6631 4730 6 791 200 59 0 29 chr1 27040385 27040420 -170155012 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 791 10874 176 29 6 chr1 27040420 27041387 -170154045 - L1_Mus3 LINE L1 -1154 4729 3752 6 791 6768 127 32 8 chr1 27041386 27042404 -170153028 + MusHAL1 LINE L1 1247 2278 -434 6 791 633 61 0 0 chr1 27042404 27042486 -170152946 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 6 791 6768 127 32 8 chr1 27042486 27042609 -170152823 + MusHAL1 LINE L1 2279 2416 -296 6 791 2001 128 13 16 chr1 27042693 27043003 -170152429 + RLTR27 LTR ERVK 1 309 0 6 791 1113 181 37 0 chr1 27045135 27045350 -170150082 + URR1B DNA MER1_type 2 224 -1 6 791 1987 98 11 0 chr1 27045688 27045973 -170149459 + L1_Mus1 LINE L1 6280 6567 0 6 791 723 75 25 0 chr1 27046020 27046140 -170149292 + (TC)n Simple_repeat Simple_repeat 2 124 0 7 791 918 303 45 7 chr1 27046162 27046451 -170148981 + MTD LTR MaLR 119 418 -1 7 791 31081 81 2 8 chr1 27047026 27052077 -170143355 + L1Md_F2 LINE L1 569 5586 -297 7 791 7776 63 1 0 chr1 27052077 27053060 -170142372 + L1Md_F2 LINE L1 5587 6570 -12 7 791 14770 113 60 1 chr1 27053138 27054424 -170141008 - L1_Mus2 LINE L1 0 6566 5239 7 791 222 91 0 0 chr1 27054424 27054457 -170140975 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 791 14770 167 80 5 chr1 27054457 27058697 -170136735 - L1_Mus2 LINE L1 -648 5238 409 7 791 22 0 0 0 chr1 27058730 27058752 -170136680 + AT_rich Low_complexity Low_complexity 1 22 0 7 791 212 139 0 44 chr1 27058767 27058812 -170136620 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 791 546 345 39 20 chr1 27059542 27059796 -170135636 + Lx8 LINE L1 6943 7201 -272 7 791 333 0 0 0 chr1 27060089 27060126 -170135306 + (TTA)n Simple_repeat Simple_repeat 2 38 0 7 791 273 327 136 0 chr1 27060374 27060484 -170134948 - Lx8 LINE L1 -275 7198 7074 7 791 207 0 0 0 chr1 27060497 27060520 -170134912 + (T)n Simple_repeat Simple_repeat 1 23 0 8 791 1171 294 135 17 chr1 27060630 27060817 -170134615 - Lx8 LINE L1 -627 6846 6602 7 791 369 0 0 0 chr1 27060817 27060858 -170134574 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 791 1171 294 135 17 chr1 27060858 27061150 -170134282 - Lx8 LINE L1 -872 6601 6311 7 791 1497 267 7 172 chr1 27061453 27062145 -170133287 + RMER19C LTR ERVK 1 578 -33 8 791 968 326 79 27 chr1 27062611 27063433 -170131999 - Lx8 LINE L1 -81 5799 4935 7 791 2533 245 68 62 chr1 27063468 27064420 -170131012 + RMER17B LTR ERVK 1 958 0 8 791 606 88 36 22 chr1 27064431 27064570 -170130862 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 8 791 328 281 152 25 chr1 27064570 27064774 -170130658 - Lx8 LINE L1 -970 4907 4678 7 791 405 0 0 0 chr1 27064997 27065042 -170130390 + (T)n Simple_repeat Simple_repeat 1 45 0 8 791 773 71 59 12 chr1 27065060 27065230 -170130202 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 8 791 1112 98 0 0 chr1 27065234 27065377 -170130055 - B1_Mus1 SINE Alu -5 143 1 8 791 30 97 0 0 chr1 27065384 27065477 -170129955 + AT_rich Low_complexity Low_complexity 1 93 0 8 791 279 0 0 0 chr1 27066176 27066207 -170129225 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 791 216 67 0 0 chr1 27066614 27066644 -170128788 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 791 29387 107 15 20 chr1 27066899 27072229 -170123203 + L1Md_F2 LINE L1 288 5585 -298 9 791 7336 75 11 4 chr1 27072230 27073206 -170122226 + L1Md_F2 LINE L1 5587 6569 -13 9 791 22 35 0 0 chr1 27073864 27073893 -170121539 + AT_rich Low_complexity Low_complexity 1 29 0 9 791 1048 240 70 37 chr1 27074159 27074431 -170121001 + MTD LTR MaLR 1 281 -138 9 791 26 50 0 0 chr1 27075626 27075666 -170119766 + AT_rich Low_complexity Low_complexity 1 40 0 9 791 460 303 113 47 chr1 27075718 27076400 -170119032 + L1M4c LINE L1 1443 2142 -3941 9 791 21 82 0 0 chr1 27076643 27076692 -170118740 + AT_rich Low_complexity Low_complexity 1 49 0 9 791 2350 64 35 6 chr1 27076725 27077041 -170118391 + L1Md_F2 LINE L1 6245 6569 -13 9 791 402 21 0 0 chr1 27078281 27078328 -170117104 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 791 3467 62 0 0 chr1 27078618 27079053 -170116379 - L1Md_T LINE L1 -382 6200 5766 9 791 2921 66 0 0 chr1 27079054 27079433 -170115999 + L1Md_T LINE L1 6204 6582 0 9 791 312 329 65 13 chr1 27079444 27079598 -170115834 - Lx8 LINE L1 -571 6902 6741 1 791 7209 89 9 1 chr1 27079597 27081143 -170114289 + L1_Mus1 LINE L1 5008 6567 0 1 791 423 378 28 24 chr1 27081137 27081389 -170114043 - Lx8 LINE L1 -712 6761 6509 1 791 239 239 69 14 chr1 27081416 27081488 -170113944 + RLTR40 LTR ERVK 353 428 -389 1 791 2507 43 0 0 chr1 27081538 27081842 -170113590 - L1Md_F2 LINE L1 0 6582 6279 1 791 462 49 0 0 chr1 27081866 27081927 -170113505 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 791 283 295 92 8 chr1 27082302 27082432 -170113000 - L1MCc LINE L1 -6233 190 50 1 791 35500 81 6 19 chr1 27083631 27089861 -170105571 - L1Md_F2 LINE L1 0 6582 233 1 791 6036 36 1 1 chr1 27089877 27090602 -170104830 - L1Md_T LINE L1 0 6582 5858 1 791 8013 15 0 0 chr1 27090602 27091534 -170103898 + L1_Mm LINE L1 3747 4678 -1205 1 791 816 227 50 10 chr1 27091562 27091762 -170103670 + B3 SINE B2 8 215 -1 1 791 423 0 0 0 chr1 27093199 27093246 -170102186 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 791 25 0 0 0 chr1 27093515 27093540 -170101892 + AT_rich Low_complexity Low_complexity 1 25 0 1 791 27 0 0 0 chr1 27095082 27095109 -170100323 + AT_rich Low_complexity Low_complexity 1 27 0 1 791 411 151 0 0 chr1 27096071 27096164 -170099268 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 1 791 1127 306 30 47 chr1 27096801 27097250 -170098182 + Lx9 LINE L1 6500 6944 -700 1 791 432 29 43 14 chr1 27097250 27097320 -170098112 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 1 791 1127 306 30 47 chr1 27097320 27097361 -170098071 + Lx9 LINE L1 6945 6982 -662 1 791 280 323 47 70 chr1 27097436 27097649 -170097783 + Lx9 LINE L1 7225 7432 -212 1 791 218 238 0 24 chr1 27097674 27097756 -170097676 + GA-rich Low_complexity Low_complexity 6 85 0 1 791 23 66 0 16 chr1 27097927 27097975 -170097457 + AT_rich Low_complexity Low_complexity 1 48 0 1 791 2178 76 147 3 chr1 27097975 27098316 -170097116 + L1_Mus3 LINE L1 6242 6631 -7 1 791 23 66 0 16 chr1 27098316 27098329 -170097103 + AT_rich Low_complexity Low_complexity 1 13 0 1 791 365 268 21 0 chr1 27098571 27098668 -170096764 + ORR1D1 LTR MaLR 3 101 -273 1 791 246 333 11 0 chr1 27098706 27098798 -170096634 + ORR1D1 LTR MaLR 280 372 -12 1 791 2315 267 19 24 chr1 27098798 27099431 -170096001 + ORR1D1-int LTR MaLR 1 630 -740 1 791 546 16 0 0 chr1 27099441 27099504 -170095928 + (CAA)n Simple_repeat Simple_repeat 2 64 0 1 791 2526 146 17 7 chr1 27099504 27099912 -170095520 - Lx LINE L1 -457 6197 5786 1 791 4124 64 2 4 chr1 27099912 27100446 -170094986 - L1Md_F2 LINE L1 -12 6570 6038 1 791 207 0 0 0 chr1 27100545 27100568 -170094864 + (T)n Simple_repeat Simple_repeat 1 23 0 1 791 23 0 0 0 chr1 27101022 27101045 -170094387 + AT_rich Low_complexity Low_complexity 1 23 0 1 791 220 195 0 0 chr1 27101324 27101365 -170094067 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 791 497 264 0 65 chr1 27101425 27101563 -170093869 + MTC LTR MaLR 3 131 -290 1 791 1158 202 0 9 chr1 27101547 27101762 -170093670 + URR1B DNA MER1_type 7 219 -6 1 791 906 249 21 10 chr1 27102302 27102517 -170092915 + MTC LTR MaLR 98 334 -66 1 791 738 62 0 0 chr1 27102517 27102613 -170092819 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 791 573 313 108 32 chr1 27102613 27102674 -170092758 + MTC LTR MaLR 335 394 -6 1 791 1860 262 39 43 chr1 27104711 27105246 -170090186 - MT2A LTR ERVL 0 533 1 1 791 1335 272 154 7 chr1 27105482 27105630 -170089802 + L1_Mur3 LINE L1 4294 4458 -1422 1 791 1745 193 58 3 chr1 27105630 27105978 -170089454 + ORR1B2 LTR MaLR 1 367 0 1 791 1335 272 154 7 chr1 27105978 27106502 -170088930 + L1_Mur3 LINE L1 4459 5065 -815 1 791 10839 24 0 0 chr1 27106496 27107764 -170087668 + L1Md_T LINE L1 4319 5586 -297 1 791 8331 37 1 0 chr1 27107764 27108759 -170086673 + L1Md_T LINE L1 5587 6582 0 1 791 34 24 0 0 chr1 27108759 27108800 -170086632 + AT_rich Low_complexity Low_complexity 1 41 0 1 791 1023 95 7 7 chr1 27109479 27109627 -170085805 + B1_Mus1 SINE Alu 1 148 0 1 791 22 0 0 0 chr1 27109805 27109827 -170085605 + AT_rich Low_complexity Low_complexity 1 22 0 1 791 34 42 0 0 chr1 27110583 27110631 -170084801 + AT_rich Low_complexity Low_complexity 1 48 0 1 791 331 208 54 0 chr1 27110639 27110769 -170084663 + (TA)n Simple_repeat Simple_repeat 2 138 0 1 791 23 0 0 0 chr1 27111165 27111188 -170084244 + AT_rich Low_complexity Low_complexity 1 23 0 1 791 29 60 0 0 chr1 27111766 27111816 -170083616 + AT_rich Low_complexity Low_complexity 1 50 0 1 791 243 189 0 0 chr1 27112797 27112850 -170082582 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 791 1111 112 0 11 chr1 27113563 27113744 -170081688 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 791 1134 102 0 0 chr1 27114272 27114439 -170080993 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 791 234 342 102 8 chr1 27114447 27114565 -170080867 - B3A SINE B2 -61 137 9 1 791 633 80 0 0 chr1 27115419 27115507 -170079925 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 791 34 84 0 0 chr1 27116103 27116186 -170079246 + AT_rich Low_complexity Low_complexity 1 83 0 1 791 1452 177 142 107 chr1 27116210 27116641 -170078791 - RLTR41 LTR ERV1 0 446 1 1 791 26 74 0 0 chr1 27117098 27117152 -170078280 + AT_rich Low_complexity Low_complexity 1 54 0 1 791 1217 214 22 32 chr1 27117157 27117471 -170077961 - Lx3C LINE L1 -2 6974 6664 1 791 996 331 63 55 chr1 27117651 27117904 -170077528 - Lx8 LINE L1 -9 7464 7232 1 791 939 102 0 0 chr1 27117904 27118041 -170077391 + (GGGGA)n Simple_repeat Simple_repeat 4 140 0 1 791 603 27 0 0 chr1 27118045 27118118 -170077314 + (GAGAA)n Simple_repeat Simple_repeat 4 76 0 1 791 996 331 63 55 chr1 27118118 27118571 -170076861 - Lx8 LINE L1 -242 7231 6749 1 791 228 67 0 0 chr1 27118961 27118991 -170076441 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 791 380 355 37 11 chr1 27119163 27119354 -170076078 + L1MEg2 LINE L1 194 389 -6063 1 791 28 29 0 0 chr1 27119927 27119962 -170075470 + AT_rich Low_complexity Low_complexity 1 35 0 1 791 307 282 176 0 chr1 27120339 27120470 -170074962 - MIRb SINE MIR -10 258 105 1 791 1272 213 71 14 chr1 27121720 27122001 -170073431 + RLTR20D LTR ERVK 1 297 -271 1 791 1918 36 0 0 chr1 27122001 27122224 -170073208 + L1Md_F2 LINE L1 5363 5585 -298 1 791 7809 55 7 0 chr1 27122225 27123214 -170072218 + L1Md_F2 LINE L1 5587 6582 0 1 791 1372 214 14 51 chr1 27123214 27123510 -170071922 + RLTR20D LTR ERVK 284 568 0 1 791 577 335 77 101 chr1 27123510 27123801 -170071631 - Lx8 LINE L1 -604 6869 6563 1 791 1106 82 0 0 chr1 27123801 27123948 -170071484 + B1_Mus2 SINE Alu 1 147 0 1 791 577 335 77 101 chr1 27123948 27124263 -170071169 - Lx8 LINE L1 -911 6562 6277 1 791 410 118 21 21 chr1 27124270 27124365 -170071067 + CT-rich Low_complexity Low_complexity 2 96 0 1 791 3832 267 83 71 chr1 27125145 27125434 -170069998 + Lx7 LINE L1 5461 5729 -433 1 791 2900 35 82 5 chr1 27125434 27125802 -170069630 + MTA_Mm LTR MaLR 1 396 0 1 791 8667 52 4 15 chr1 27125802 27126913 -170068519 + MTA_Mm-int LTR MaLR 1 1098 0 1 791 3068 66 5 5 chr1 27126913 27127309 -170068123 + MTA_Mm LTR MaLR 1 396 0 1 791 3832 264 87 61 chr1 27127309 27128569 -170066863 + Lx7 LINE L1 5703 7018 -678 1 791 206 62 31 0 chr1 27128569 27128601 -170066831 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 791 3832 264 87 61 chr1 27128601 27128751 -170066681 + Lx7 LINE L1 7019 7169 -527 1 791 360 0 0 0 chr1 27128835 27128875 -170066557 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 791 28 99 0 0 chr1 27128984 27129075 -170066357 + AT_rich Low_complexity Low_complexity 1 91 0 1 791 214 156 61 82 chr1 27129300 27129349 -170066083 + PB1 SINE Alu 73 120 -7 1 791 2227 219 22 22 chr1 27129389 27129884 -170065548 + L1VL4 LINE L1 693 1187 -5470 1 791 1927 149 48 31 chr1 27129885 27130238 -170065194 + RLTR13D6 LTR ERVK 1 359 -543 1 791 515 276 47 16 chr1 27130627 27130756 -170064676 - ETnERV2-int LTR ERVK -204 7202 7070 1 791 2133 178 83 15 chr1 27130757 27131262 -170064170 + RLTR13D6 LTR ERVK 352 856 -46 1 98 21315 161 24 6 chr1 27131267 27133635 -170061797 + L1VL4 LINE L1 1116 3476 -2407 1 792 204 40 0 0 chr1 27133635 27133660 -170061772 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 792 21315 161 25 7 chr1 27133660 27135407 -170060025 + L1VL4 LINE L1 3477 5303 -580 1 792 2492 160 7 0 chr1 27135406 27135812 -170059620 + L1_Mus3 LINE L1 6122 6530 -108 1 792 1134 263 44 15 chr1 27135812 27136225 -170059207 - RMER19A LTR ERVK -249 488 3 1 792 2071 215 83 25 chr1 27136301 27136869 -170058563 - Lx9 LINE L1 0 7644 7044 1 792 31 44 0 0 chr1 27136874 27136919 -170058513 + AT_rich Low_complexity Low_complexity 1 45 0 1 792 402 295 42 0 chr1 27136949 27137044 -170058388 + PB1D9 SINE Alu 14 112 -8 1 792 228 350 203 24 chr1 27137044 27137072 -170058360 + B4 SINE B4 99 243 -49 1 792 243 324 0 136 chr1 27137150 27137268 -170058164 - ID_B1 SINE B4 -41 183 82 1 792 1111 117 50 0 chr1 27137569 27137749 -170057683 - B2_Mm1a SINE B2 -4 189 1 1 792 39 0 0 0 chr1 27138651 27138690 -170056742 + AT_rich Low_complexity Low_complexity 1 39 0 1 792 32 43 0 0 chr1 27139186 27139232 -170056200 + AT_rich Low_complexity Low_complexity 1 46 0 1 792 262 219 179 82 chr1 27139756 27139940 -170055492 + Lx9 LINE L1 7443 7644 0 1 792 22 56 0 0 chr1 27139940 27139976 -170055456 + AT_rich Low_complexity Low_complexity 1 36 0 1 792 21 0 0 0 chr1 27140319 27140340 -170055092 + AT_rich Low_complexity Low_complexity 1 21 0 1 792 22 35 0 0 chr1 27140492 27140521 -170054911 + AT_rich Low_complexity Low_complexity 1 29 0 1 792 1912 123 13 3 chr1 27140928 27141230 -170054202 + Lx2 LINE L1 6691 6995 -2 1 792 860 274 143 36 chr1 27141342 27141959 -170053473 - Lx7 LINE L1 -9 7687 7005 1 792 1077 106 0 0 chr1 27141987 27142167 -170053265 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 792 25 0 0 0 chr1 27142179 27142204 -170053228 + AT_rich Low_complexity Low_complexity 1 25 0 1 792 469 350 97 39 chr1 27142567 27142876 -170052556 - ORR1B1 LTR MaLR -54 340 14 1 792 489 314 45 14 chr1 27143097 27143320 -170052112 - Lx8 LINE L1 -332 7141 6912 1 792 969 330 29 11 chr1 27143968 27144342 -170051090 - Lx8 LINE L1 -904 6569 6189 1 792 5947 145 49 16 chr1 27144353 27144472 -170050960 - Lx LINE L1 -6 6648 6535 1 792 249 33 0 0 chr1 27144472 27144502 -170050930 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 792 17075 157 38 21 chr1 27144502 27146029 -170049403 - Lx LINE L1 -120 6534 4935 1 792 3865 32 4 0 chr1 27146029 27146493 -170048939 + L1Md_T LINE L1 6117 6582 0 1 792 17075 174 23 29 chr1 27146493 27148762 -170046670 - Lx LINE L1 -949 4934 2703 1 792 198 71 0 0 chr1 27148762 27148790 -170046642 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 792 17075 174 23 29 chr1 27148790 27149081 -170046351 - Lx LINE L1 -3181 2702 2431 1 792 2776 124 11 0 chr1 27149090 27149612 -170045820 - MusHAL1 LINE L1 -2231 1122 596 1 792 32912 77 1 17 chr1 27149609 27154803 -170040629 + L1Md_F2 LINE L1 483 5586 -297 1 792 7761 61 4 3 chr1 27154804 27155798 -170039634 + L1Md_F2 LINE L1 5588 6582 0 1 792 3782 158 2 0 chr1 27155798 27156404 -170039028 - L1VL4 LINE L1 -5486 816 210 1 792 2642 173 77 32 chr1 27156631 27157167 -170038265 - RMER13A LTR ERVK -300 560 1 1 792 658 131 0 16 chr1 27157577 27157701 -170037731 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 792 603 158 6 6 chr1 27157737 27157849 -170037583 + Lx LINE L1 5581 5697 -957 2 792 529 338 13 4 chr1 27157861 27158090 -170037342 - Lx8 LINE L1 -988 6485 6255 2 792 3143 51 5 22 chr1 27158758 27159161 -170036271 - MTA_Mm LTR MaLR 0 396 1 2 792 7925 136 31 13 chr1 27159175 27160487 -170034945 + Lx3A LINE L1 5667 6978 -3 2 792 195 42 0 0 chr1 27160541 27160565 -170034867 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 792 351 96 0 0 chr1 27162940 27162992 -170032440 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 792 438 353 30 30 chr1 27163038 27163269 -170032163 + MTEa LTR MaLR 148 378 -1 2 792 1376 46 3 3 chr1 27163734 27164024 -170031408 + (TG)n Simple_repeat Simple_repeat 1 290 0 2 792 32 67 0 0 chr1 27164542 27164602 -170030830 + AT_rich Low_complexity Low_complexity 1 60 0 2 792 204 182 0 0 chr1 27164602 27164646 -170030786 + (ATG)n Simple_repeat Simple_repeat 2 45 0 2 792 377 259 58 29 chr1 27164798 27164969 -170030463 - Lx9 LINE L1 -44 7600 7425 2 792 194 264 75 0 chr1 27165256 27165309 -170030123 + L2 LINE L2 1958 2014 -1405 2 792 353 259 3 0 chr1 27165660 27165747 -170029685 + RLTR26 LTR ERVK 1 80 -828 2 792 2120 258 31 73 chr1 27165868 27166651 -170028781 + RMER17B LTR ERVK 94 795 -163 2 792 353 319 107 46 chr1 27166634 27166897 -170028535 + RLTR26 LTR ERVK 630 908 0 2 792 1108 56 0 0 chr1 27167713 27167855 -170027577 - B1_Mus1 SINE Alu 0 148 7 2 792 402 178 41 130 chr1 27167748 27167871 -170027561 - MT2B LTR ERVL -337 264 153 2 792 21 0 0 0 chr1 27168526 27168547 -170026885 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 854 239 45 71 chr1 27168798 27169150 -170026282 - Lx7 LINE L1 -86 7610 7106 2 792 27 92 0 0 chr1 27169152 27169228 -170026204 + AT_rich Low_complexity Low_complexity 1 76 0 2 792 453 145 0 0 chr1 27169264 27169340 -170026092 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 792 2270 283 42 24 chr1 27169363 27170248 -170025184 - Lx7 LINE L1 -355 7341 6393 2 792 532 199 8 8 chr1 27170438 27170565 -170024867 - Lx7 LINE L1 -1 7695 7569 2 792 273 327 61 6 chr1 27171449 27171634 -170023798 + L1M5 LINE L1 5599 5791 -377 2 792 340 277 17 144 chr1 27173302 27173420 -170022012 + B1F2 SINE Alu 1 103 -46 2 792 512 56 0 14 chr1 27174247 27174320 -170021112 + B1_Mm SINE Alu 76 147 0 2 792 267 31 0 0 chr1 27174356 27174388 -170021044 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 792 442 312 0 0 chr1 27174734 27174830 -170020602 + B1F SINE Alu 2 97 -52 2 792 336 48 0 0 chr1 27175980 27176022 -170019410 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 792 2096 96 23 3 chr1 27176524 27176826 -170018606 - L1_Mus2 LINE L1 -43 6523 6216 2 792 1017 329 32 23 chr1 27176873 27177346 -170018086 - Lx9 LINE L1 -641 7003 6527 2 792 601 255 18 37 chr1 27177370 27177533 -170017899 + Lx9 LINE L1 7052 7211 -433 2 792 297 326 8 23 chr1 27177606 27177738 -170017694 + Lx8 LINE L1 5795 5924 -1549 2 792 633 274 89 5 chr1 27177846 27178048 -170017384 + Lx8 LINE L1 6766 6984 -489 2 792 4946 103 37 17 chr1 27178063 27178850 -170016582 - RLTR13C2 LTR ERVK 0 902 6 2 792 3122 120 40 61 chr1 27178850 27179373 -170016059 - RLTR1B LTR ERV1 0 512 1 2 792 238 292 71 54 chr1 27179398 27179510 -170015922 + Lx8 LINE L1 7010 7123 -350 2 792 604 55 44 0 chr1 27180598 27180689 -170014743 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 2 792 235 404 62 51 chr1 27181106 27181461 -170013971 - MLT2F LTR ERVL -68 595 237 2 792 438 151 102 23 chr1 27181573 27181671 -170013761 - MTE2b LTR MaLR 0 379 275 2 792 1990 275 71 22 chr1 27181705 27182391 -170013041 - RCHARR1 DNA MER1_type -173 801 73 2 792 216 0 0 0 chr1 27182391 27182415 -170013017 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 792 1990 275 71 22 chr1 27182415 27182491 -170012941 - RCHARR1 DNA MER1_type -902 72 2 2 792 22 106 0 0 chr1 27182666 27182751 -170012681 + AT_rich Low_complexity Low_complexity 1 85 0 2 792 990 152 0 12 chr1 27182812 27182972 -170012460 + B2_Mm2 SINE B2 3 160 -35 2 792 31847 86 11 18 chr1 27183270 27188684 -170006748 + L1Md_F3 LINE L1 214 5586 -297 2 792 8159 42 2 1 chr1 27188684 27189681 -170005751 + L1Md_F3 LINE L1 5587 6584 0 2 792 21 0 0 0 chr1 27189772 27189793 -170005639 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 33 103 0 0 chr1 27189862 27189979 -170005453 + AT_rich Low_complexity Low_complexity 1 117 0 2 792 4342 168 29 21 chr1 27191018 27191884 -170003548 - L1_Mur2 LINE L1 -1156 4721 3849 2 792 5322 176 9 12 chr1 27191869 27192871 -170002561 + Lx LINE L1 4734 5732 -151 2 792 2931 160 0 0 chr1 27192871 27193358 -170002074 + L1_Mm LINE L1 5334 5820 -63 2 792 2541 80 60 30 chr1 27193358 27193757 -170001675 + IAPLTR2a LTR ERVK 1 411 0 2 792 352 74 0 0 chr1 27193759 27193813 -170001619 + IAPEz-int LTR ERVK 3 56 -1931 2 792 4261 83 11 37 chr1 27193799 27194544 -170000888 + IAPEz-int LTR ERVK 10 662 -5819 2 792 2141 86 0 0 chr1 27194544 27194822 -170000610 + IAPEz-int LTR ERVK 1359 1636 -4845 2 792 5997 41 12 12 chr1 27194821 27195564 -169999868 + IAPEz-int LTR ERVK 5736 6478 -3 2 792 5005 156 7 1 chr1 27195564 27196392 -169999040 + Lx LINE L1 5814 6646 -8 2 792 19610 88 81 3 chr1 27196578 27201500 -169993932 + L1Md_T LINE L1 1 5589 -297 2 792 8413 33 0 0 chr1 27201500 27202522 -169992910 + L1Md_T LINE L1 5590 6585 0 2 792 256 316 109 37 chr1 27203307 27203487 -169991945 - MLT1A0 LTR MaLR -209 199 24 2 792 646 320 54 20 chr1 27203958 27204401 -169991031 - L1M2 LINE L1 -923 5220 4763 2 792 190 0 67 0 chr1 27204408 27204438 -169990994 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 792 385 0 0 0 chr1 27204444 27204495 -169990937 - L1Md_T LINE L1 -1 6581 6531 2 792 271 31 0 0 chr1 27204495 27204527 -169990905 + L1Md_A LINE L1 6137 6168 -414 2 792 289 270 59 43 chr1 27204690 27204876 -169990556 - L1_Mm LINE L1 -1301 4582 4394 2 792 1226 259 33 0 chr1 27204927 27205201 -169990231 - Lx6 LINE L1 -192 7268 6986 2 792 407 263 112 33 chr1 27205247 27205685 -169989747 - L1M2 LINE L1 -1779 4364 3863 2 792 221 75 25 0 chr1 27205842 27205882 -169989550 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 792 988 317 20 37 chr1 27206710 27207113 -169988319 - Lx8 LINE L1 -839 6634 6239 2 792 218 303 43 43 chr1 27207144 27207237 -169988195 - B3 SINE B2 -123 93 1 2 792 26 30 0 0 chr1 27207245 27207278 -169988154 + AT_rich Low_complexity Low_complexity 1 33 0 2 792 202 174 21 21 chr1 27207753 27207800 -169987632 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 792 22 0 0 0 chr1 27208441 27208463 -169986969 + AT_rich Low_complexity Low_complexity 1 22 0 2 792 30 77 0 0 chr1 27209508 27209573 -169985859 + AT_rich Low_complexity Low_complexity 1 65 0 2 792 6447 264 97 93 chr1 27209696 27210505 -169984927 + L1_Mur3 LINE L1 1468 2324 -3556 2 792 5969 97 26 2 chr1 27210505 27211384 -169984048 + L1_Mus3 LINE L1 5739 6638 0 2 792 6447 264 97 93 chr1 27211384 27214377 -169981055 + L1_Mur3 LINE L1 2325 5298 -582 2 792 1889 125 33 36 chr1 27214377 27214709 -169980723 + Lx2 LINE L1 6665 6995 -2 2 792 6447 264 97 93 chr1 27214709 27215138 -169980294 + L1_Mur3 LINE L1 5299 5719 -161 2 792 400 262 152 43 chr1 27215148 27215428 -169980004 + ORR1D1 LTR MaLR 1 357 -2 2 792 383 296 30 0 chr1 27215433 27215568 -169979864 + L1_Rod LINE L1 5696 5834 -13 2 792 1559 226 118 33 chr1 27215608 27216066 -169979366 - Lx2B LINE L1 0 7000 6504 2 792 825 226 0 11 chr1 27216062 27216250 -169979182 + Lx2B LINE L1 6197 6382 -618 2 792 35195 37 1 0 chr1 27216250 27222041 -169973391 + L1Md_T LINE L1 1 5589 -297 2 792 8871 10 1 0 chr1 27222041 27223036 -169972396 + L1Md_T LINE L1 5590 6585 0 2 792 1767 276 39 4 chr1 27223053 27223592 -169971840 + Lx3C LINE L1 6373 6930 -46 2 792 922 176 134 6 chr1 27223608 27223834 -169971598 + RMER12 LTR ERVK 375 608 -796 2 792 4627 119 18 21 chr1 27223834 27224702 -169970730 - Lx3A LINE L1 -1028 5953 5094 2 792 5435 142 55 6 chr1 27224702 27225644 -169969788 + Lx3A LINE L1 5981 6968 -13 2 792 432 0 0 0 chr1 27225644 27225692 -169969740 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 2 792 234 127 0 87 chr1 27225698 27225767 -169969665 + A-rich Low_complexity Low_complexity 3 65 0 2 792 1002 187 31 9 chr1 27225767 27225994 -169969438 + RMER12 LTR ERVK 567 798 -524 2 792 777 172 0 6 chr1 27227366 27227530 -169967902 + Lx LINE L1 6491 6653 -1 2 792 24 53 0 0 chr1 27227756 27227794 -169967638 + AT_rich Low_complexity Low_complexity 1 38 0 2 792 423 191 0 0 chr1 27228051 27228203 -169967229 + (TA)n Simple_repeat Simple_repeat 2 153 0 2 792 233 235 6 0 chr1 27228222 27228336 -169967096 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 792 817 116 17 0 chr1 27228336 27228508 -169966924 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 2 792 233 235 6 0 chr1 27228508 27228559 -169966873 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 792 802 114 24 0 chr1 27228564 27228731 -169966701 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 2 792 198 210 25 0 chr1 27228735 27228854 -169966578 + (TA)n Simple_repeat Simple_repeat 1 122 0 2 792 21 100 0 0 chr1 27228919 27228989 -169966443 + AT_rich Low_complexity Low_complexity 1 70 0 2 792 29 0 0 0 chr1 27229069 27229098 -169966334 + AT_rich Low_complexity Low_complexity 1 29 0 2 792 257 181 43 0 chr1 27229139 27229233 -169966199 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 2 792 216 111 0 0 chr1 27229951 27229987 -169965445 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 792 2139 127 16 0 chr1 27230254 27230568 -169964864 - ORR1A2 LTR MaLR -8 319 1 2 792 596 323 129 17 chr1 27230830 27231302 -169964130 + L1MB8 LINE L1 5498 6022 -156 2 792 21 57 0 0 chr1 27231396 27231431 -169964001 + AT_rich Low_complexity Low_complexity 1 35 0 2 792 37 39 0 0 chr1 27231442 27231493 -169963939 + AT_rich Low_complexity Low_complexity 1 51 0 2 792 11837 112 20 23 chr1 27232399 27233371 -169962061 + L1_Mus1 LINE L1 3946 4886 -997 2 792 3043 79 24 9 chr1 27233371 27233793 -169961639 - L1Md_F2 LINE L1 -12 6570 6143 2 792 11837 107 42 17 chr1 27233793 27235431 -169960001 + L1_Mus1 LINE L1 4887 6567 0 2 792 1185 72 6 37 chr1 27235449 27235797 -169959635 + (GGAA)n Simple_repeat Simple_repeat 1 337 0 2 792 437 299 0 57 chr1 27236049 27236111 -169959321 - B1_Mur1 SINE Alu -7 142 82 2 792 3870 80 64 6 chr1 27236111 27236640 -169958792 - LTRIS2 LTR ERV1 0 564 5 2 792 437 299 0 57 chr1 27236640 27236701 -169958731 - B1_Mur1 SINE Alu -68 81 26 2 792 3291 14 0 0 chr1 27236981 27237348 -169958084 + IAPLTR1_Mm LTR ERVK 1 367 0 2 792 52897 27 15 1 chr1 27237348 27243738 -169951694 + IAPEz-int LTR ERVK 8 6481 0 2 792 3291 14 0 0 chr1 27243738 27244105 -169951327 + IAPLTR1_Mm LTR ERVK 1 367 0 2 792 1279 222 136 41 chr1 27244105 27244472 -169950960 - MTC LTR MaLR -19 402 1 2 792 296 295 11 11 chr1 27244473 27244562 -169950870 + ORR1E LTR MaLR 269 357 -2 2 792 702 238 21 0 chr1 27244763 27244906 -169950526 - B1_Mus2 SINE Alu -1 146 1 2 792 3258 101 6 2 chr1 27245395 27245903 -169949529 + L1_Mm LINE L1 3644 4153 -1730 2 792 439 333 18 0 chr1 27245949 27246060 -169949372 + RMER21B LTR ERV1 729 841 -1 3 792 249 57 0 0 chr1 27246076 27246111 -169949321 + (A)n Simple_repeat Simple_repeat 1 35 0 3 792 1347 213 17 181 chr1 27246186 27246639 -169948793 - RMER21B LTR ERV1 -141 806 429 3 792 1759 196 23 62 chr1 27246639 27247117 -169948315 + RMER17B LTR ERVK 1 439 -519 3 792 1752 251 91 134 chr1 27247120 27247782 -169947650 + RMER13B LTR ERVK 272 904 -4 3 792 1742 194 6 26 chr1 27247785 27248129 -169947303 - RMER21B LTR ERV1 -503 339 3 3 792 877 329 34 10 chr1 27248135 27248552 -169946880 + Lx7 LINE L1 6652 7078 -618 3 792 645 49 10 10 chr1 27248554 27248657 -169946775 + L1_Mus4 LINE L1 6528 6630 -6 3 792 1981 153 12 9 chr1 27249035 27249364 -169946068 + Lx3B LINE L1 6643 6972 -1 3 792 323 187 55 12 chr1 27249381 27249483 -169945949 - Lx5 LINE L1 -9 5871 5774 3 792 239 0 32 0 chr1 27249483 27249514 -169945918 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 792 381 314 57 74 chr1 27249757 27250001 -169945431 + Lx7 LINE L1 6204 6443 -1253 3 792 443 326 7 61 chr1 27250111 27250258 -169945174 + B1_Mur2 SINE Alu 1 139 -10 3 792 906 58 0 0 chr1 27250258 27250379 -169945053 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 792 1029 305 59 14 chr1 27250400 27250859 -169944573 + Lx7 LINE L1 6621 7084 -612 3 792 36752 8 1 1 chr1 27250860 27256860 -169938572 + L1Md_A LINE L1 1 5586 -297 3 792 9025 4 0 0 chr1 27256860 27257855 -169937577 + L1Md_A LINE L1 5587 6581 -1 3 792 374 323 71 31 chr1 27257855 27258079 -169937353 + Lx7 LINE L1 7068 7300 -396 3 792 342 0 0 0 chr1 27258093 27258131 -169937301 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 12 32560 75 2 3 chr1 27258406 27263881 -169931551 - L1Md_F2 LINE L1 -8 6574 1115 3 793 1617 42 0 0 chr1 27263881 27264072 -169931360 - B2_Mm1a SINE B2 -2 191 1 3 793 3911 102 1 121 chr1 27264072 27264702 -169930730 - L1Md_F2 LINE L1 -5502 1114 558 3 793 252 0 0 0 chr1 27264746 27264774 -169930658 + (T)n Simple_repeat Simple_repeat 1 28 0 3 793 304 200 85 58 chr1 27266367 27266475 -169928957 + ORR1C2 LTR MaLR 253 384 0 3 793 23 0 0 0 chr1 27267106 27267129 -169928303 + AT_rich Low_complexity Low_complexity 1 23 0 3 793 9673 176 11 35 chr1 27267130 27269709 -169925723 + Lx LINE L1 399 2884 -3002 3 793 240 35 0 0 chr1 27269709 27269738 -169925694 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 3 793 9673 209 61 48 chr1 27269738 27270852 -169924580 + Lx LINE L1 2885 4341 -1539 3 793 5592 166 25 3 chr1 27270856 27271973 -169923459 + Lx LINE L1 5503 6644 -10 3 793 212 0 36 0 chr1 27271973 27272001 -169923431 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 793 360 143 0 0 chr1 27273897 27273981 -169921451 + (A)n Simple_repeat Simple_repeat 1 84 0 3 793 756 128 68 0 chr1 27275024 27275157 -169920275 - Lx2 LINE L1 -317 6680 6539 3 793 987 147 196 19 chr1 27275156 27275409 -169920023 + Lx LINE L1 6320 6568 -86 3 793 958 363 34 26 chr1 27275952 27276715 -169918717 + Lx8 LINE L1 6254 7022 -451 3 793 372 227 0 0 chr1 27276901 27276989 -169918443 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 793 3598 142 106 6 chr1 27276989 27277648 -169917784 - Lx3A LINE L1 -9 6972 6248 3 793 2075 67 0 0 chr1 27277648 27277918 -169917514 - L1Md_A LINE L1 0 6582 6313 3 793 2392 55 0 0 chr1 27277921 27278210 -169917222 + L1Md_F2 LINE L1 6058 6346 -236 3 793 1861 138 61 6 chr1 27278206 27278549 -169916883 - Lx3A LINE L1 -718 6263 5902 3 793 432 51 0 0 chr1 27278704 27278763 -169916669 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 793 489 324 39 61 chr1 27278874 27279055 -169916377 + B3 SINE B2 6 182 -34 3 793 24 32 0 0 chr1 27279055 27279086 -169916346 + AT_rich Low_complexity Low_complexity 1 31 0 3 793 21 0 0 0 chr1 27279238 27279259 -169916173 + AT_rich Low_complexity Low_complexity 1 21 0 3 793 237 282 106 0 chr1 27279505 27279647 -169915785 + L1MA9 LINE L1 6145 6301 -11 3 793 1048 349 87 11 chr1 27279736 27280290 -169915142 + Lx8 LINE L1 6602 7197 -276 3 793 414 39 0 0 chr1 27280396 27280448 -169914984 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 793 965 325 46 12 chr1 27280615 27280960 -169914472 + RMER15 LTR ERVL 183 539 -36 3 793 461 353 22 0 chr1 27280991 27281175 -169914257 + Lx8 LINE L1 6279 6466 -1007 3 793 576 295 16 12 chr1 27281166 27281410 -169914022 + L1_Mur3 LINE L1 971 1215 -6513 3 793 2041 179 3 8 chr1 27281410 27281777 -169913655 + L1Md_A LINE L1 189 553 -6063 3 793 22488 93 2 0 chr1 27281777 27282733 -169912699 + L1Md_A LINE L1 1011 1968 -3915 3 793 239 0 0 31 chr1 27282733 27282765 -169912667 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 793 22488 86 1 0 chr1 27282765 27285165 -169910267 + L1Md_A LINE L1 1969 4372 -1511 3 793 492 212 0 0 chr1 27285165 27285264 -169910168 + L1Md_A LINE L1 4884 4982 -901 3 793 2198 131 5 37 chr1 27285264 27285645 -169909787 + L1Md_F2 LINE L1 6214 6582 0 3 793 1408 217 96 34 chr1 27285648 27286087 -169909345 + L1_Mur3 LINE L1 1203 1668 -4212 3 793 11414 205 48 41 chr1 27286087 27286725 -169908707 + L1_Mus4 LINE L1 2824 3477 -2406 3 793 366 80 0 0 chr1 27286725 27286775 -169908657 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 793 11414 205 48 41 chr1 27286775 27287674 -169907758 + L1_Mus4 LINE L1 3478 4419 -1464 3 793 3859 152 42 18 chr1 27287674 27288464 -169906968 + RMER17D2 LTR ERVK 1 809 0 3 793 11414 205 48 41 chr1 27288464 27288787 -169906645 + L1_Mus4 LINE L1 4420 4735 -1148 3 793 308 43 0 21 chr1 27288787 27288834 -169906598 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 3 793 11414 155 25 25 chr1 27288834 27290772 -169904660 + L1_Mus4 LINE L1 4736 6634 -2 3 793 858 225 93 5 chr1 27290781 27290995 -169904437 + Lx7 LINE L1 6196 6428 -1268 3 793 1849 96 119 3 chr1 27291331 27291625 -169903807 - L1_Mus3 LINE L1 -8 6630 6303 3 793 665 292 37 68 chr1 27292848 27293039 -169902393 + B3A SINE B2 1 185 -13 3 793 474 96 0 0 chr1 27293039 27293112 -169902320 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 793 1225 209 56 18 chr1 27293384 27293835 -169901597 + MYSERV-int LTR ERVK 6084 6397 -153 3 793 2157 209 63 10 chr1 27293844 27294323 -169901109 + RLTR11A LTR ERVK 10 513 -15 3 793 649 347 24 44 chr1 27294523 27294933 -169900499 + Lx9 LINE L1 6946 7347 -297 3 793 34 0 0 0 chr1 27295157 27295191 -169900241 + AT_rich Low_complexity Low_complexity 1 34 0 3 793 228 329 41 25 chr1 27295210 27295453 -169899979 + L1MA4 LINE L1 5494 5740 -560 3 793 2222 270 115 10 chr1 27295493 27296163 -169899269 + Lx6 LINE L1 6699 7438 -22 3 793 326 339 49 20 chr1 27296199 27296443 -169898989 + L1MA4 LINE L1 5798 6048 -252 3 793 3520 171 24 9 chr1 27296556 27297189 -169898243 - RLTR26 LTR ERVK 0 642 1 3 793 272 83 0 20 chr1 27297534 27297583 -169897849 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 793 345 75 0 0 chr1 27298036 27298089 -169897343 + (T)n Simple_repeat Simple_repeat 1 53 0 3 793 381 297 62 0 chr1 27300924 27301052 -169894380 - RSINE1 SINE B4 -21 144 9 3 793 236 348 35 26 chr1 27301791 27301906 -169893526 + ID_B1 SINE B4 15 130 -94 3 793 26 0 0 0 chr1 27302612 27302638 -169892794 + AT_rich Low_complexity Low_complexity 1 26 0 3 793 1176 223 42 33 chr1 27303338 27303642 -169891790 + Lx5 LINE L1 6381 6647 -403 3 793 1135 221 205 0 chr1 27303933 27304231 -169891201 + Lx5 LINE L1 6678 7036 -14 3 793 252 0 0 0 chr1 27304231 27304259 -169891173 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 3 793 22 0 0 0 chr1 27304366 27304388 -169891044 + AT_rich Low_complexity Low_complexity 1 22 0 3 793 1267 244 82 66 chr1 27304870 27305418 -169890014 + Lx7 LINE L1 7139 7695 -1 3 793 4626 131 112 4 chr1 27305612 27306410 -169889022 + RMER17B LTR ERVK 75 958 0 3 793 416 271 117 13 chr1 27306851 27307090 -169888342 + L1MA9 LINE L1 5859 6122 -190 3 793 211 28 27 27 chr1 27307130 27307167 -169888265 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 3 793 247 263 131 0 chr1 27307215 27307314 -169888118 + L1MA9 LINE L1 6195 6306 -6 3 793 1735 246 96 17 chr1 27308538 27309072 -169886360 + Lx7 LINE L1 5810 6385 -1311 3 793 2428 233 60 17 chr1 27309113 27309817 -169885615 + Lx7 LINE L1 6725 7458 -238 3 793 248 152 0 15 chr1 27309932 27309999 -169885433 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 3 793 738 209 0 0 chr1 27310002 27310141 -169885291 - B1_Mur3 SINE Alu -6 143 5 3 793 275 355 99 16 chr1 27311237 27311429 -169884003 + L2 LINE L2 2703 2910 -509 3 793 1546 88 3 10 chr1 27311783 27312169 -169883263 + Lx3_Mus LINE L1 6077 6512 -497 3 793 1787 137 7 0 chr1 27312169 27312461 -169882971 + Lx3_Mus LINE L1 6716 7009 0 3 793 1919 228 45 102 chr1 27313208 27313779 -169881653 + RMER15 LTR ERVL 34 572 -3 3 793 383 328 78 8 chr1 27313866 27313995 -169881437 - MLT1I LTR MaLR -208 203 66 3 793 612 343 54 54 chr1 27314458 27314809 -169880623 + LTR79 LTR ERVL 18 368 -159 3 793 1257 319 45 42 chr1 27315307 27315922 -169879510 + Lx9 LINE L1 6543 7159 -485 3 793 414 0 0 0 chr1 27315938 27315984 -169879448 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 3 793 22 0 0 0 chr1 27316142 27316164 -169879268 + AT_rich Low_complexity Low_complexity 1 22 0 3 793 1132 316 104 24 chr1 27316339 27316847 -169878585 - Lx5 LINE L1 -75 6975 6455 3 793 228 127 46 31 chr1 27316849 27316914 -169878518 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 3 793 271 174 110 55 chr1 27316922 27316995 -169878437 - Lx5 LINE L1 -731 6729 6653 3 793 385 301 9 17 chr1 27317014 27317129 -169878303 - B1_Mur1 SINE Alu -4 145 32 3 793 4572 122 110 11 chr1 27317251 27317746 -169877686 - RMER17D LTR ERVK 0 889 321 3 793 1054 29 14 0 chr1 27317746 27317884 -169877548 + (GGAGA)n Simple_repeat Simple_repeat 2 141 0 3 793 4572 122 110 11 chr1 27317884 27318197 -169877235 - RMER17D LTR ERVK -569 320 2 3 793 260 235 39 108 chr1 27318197 27318326 -169877106 + L1VL1 LINE L1 6 83 -6339 3 793 1824 206 106 18 chr1 27318322 27318822 -169876610 + L1Md_F LINE L1 439 982 -5537 3 793 243 0 0 0 chr1 27318827 27318854 -169876578 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 793 200 86 0 28 chr1 27318854 27318889 -169876543 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 793 661 273 66 0 chr1 27319210 27319393 -169876039 - B3 SINE B2 -12 204 10 3 793 201 74 0 0 chr1 27319640 27319667 -169875765 + (A)n Simple_repeat Simple_repeat 1 27 0 3 793 362 237 56 84 chr1 27320066 27320209 -169875223 - MLT2B4 LTR ERVL -311 204 66 3 793 650 266 80 19 chr1 27320403 27320628 -169874804 + MTD LTR MaLR 184 398 -21 3 793 411 304 174 0 chr1 27321397 27321535 -169873897 + B3 SINE B2 25 186 -30 3 793 558 79 0 0 chr1 27321535 27321611 -169873821 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 793 719 105 0 8 chr1 27323246 27323380 -169872052 + (TTCC)n Simple_repeat Simple_repeat 4 136 0 3 793 423 310 49 0 chr1 27323608 27323811 -169871621 - L1M2 LINE L1 -788 5355 5143 3 793 528 16 0 0 chr1 27324249 27324310 -169871122 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 793 222 47 44 59 chr1 27324511 27324534 -169870898 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 4 793 1537 147 107 37 chr1 27324534 27324916 -169870516 + RLTR9E LTR ERVK 1 409 0 4 793 222 47 44 59 chr1 27324916 27324960 -169870472 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 4 793 690 241 109 0 chr1 27326658 27326832 -169868600 - B3 SINE B2 -12 204 12 4 793 39447 34 3 7 chr1 27327178 27333583 -169861849 - L1Md_A LINE L1 0 6582 208 4 793 1708 155 87 0 chr1 27333734 27334044 -169861388 - Lx2 LINE L1 -1 6996 6660 4 793 230 374 7 37 chr1 27337198 27337334 -169858098 - MIRb SINE MIR -39 229 98 4 793 540 30 0 0 chr1 27337432 27337498 -169857934 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 793 401 347 57 0 chr1 27337790 27337914 -169857518 - RSINE1 SINE B4 -32 133 3 4 793 2577 56 0 0 chr1 27338117 27338440 -169856992 + IAPEY2_LTR LTR ERVK 32 354 -3 4 793 700 187 44 19 chr1 27338445 27338603 -169856829 + IAPEY3-int LTR ERVK 1 162 -7518 4 793 5927 156 8 26 chr1 27338603 27339689 -169855743 + IAPEY3-int LTR ERVK 524 1590 -6090 4 793 449 209 25 34 chr1 27339692 27339811 -169855621 + RNERVK23-int LTR ERVK 5844 5961 -2256 4 793 1433 255 8 22 chr1 27339812 27340173 -169855259 + RNERVK23-int LTR ERVK 7459 7814 -403 4 793 499 258 18 65 chr1 27340901 27341071 -169854361 + RNLTR23 LTR ERVK 481 642 0 4 793 1024 220 78 15 chr1 27341071 27341291 -169854141 - MTB_Mm-int LTR MaLR -1019 239 3 4 793 1235 236 160 22 chr1 27341291 27341647 -169853785 - MTB_Mm LTR MaLR 0 407 3 4 793 455 324 36 45 chr1 27341674 27341894 -169853538 - RMER15 LTR ERVL -329 246 29 4 793 460 335 34 57 chr1 27342356 27342565 -169852867 + B3A SINE B2 1 204 -12 4 793 1399 237 62 0 chr1 27342595 27342886 -169852546 - ORR1B2 LTR MaLR -47 320 12 4 793 1363 219 69 60 chr1 27342947 27343311 -169852121 - ORR1B2 LTR MaLR 0 367 1 4 793 3341 205 56 34 chr1 27343316 27343967 -169851465 - L1_Mur3 LINE L1 -284 5596 4921 4 793 1989 201 66 20 chr1 27343967 27344470 -169850962 - RLTR11A2 LTR ERVK 0 527 2 4 793 3341 205 56 34 chr1 27344470 27344736 -169850696 - L1_Mur3 LINE L1 -960 4920 4659 4 793 2623 239 111 19 chr1 27344731 27345573 -169849859 - L1_Mur3 LINE L1 -6529 1199 281 4 793 29 0 0 0 chr1 27347377 27347406 -169848026 + AT_rich Low_complexity Low_complexity 1 29 0 4 793 469 221 361 0 chr1 27347451 27347609 -169847823 + B3 SINE B2 2 216 0 4 793 1302 296 45 22 chr1 27347839 27348330 -169847102 - Lx9 LINE L1 -343 7301 6800 4 793 279 338 61 48 chr1 27348619 27348784 -169846648 + MTEa LTR MaLR 56 222 -157 4 793 6282 127 34 2 chr1 27349051 27350035 -169845397 + Lx LINE L1 5626 6640 -14 4 793 576 0 0 0 chr1 27350035 27350099 -169845333 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 4 793 1023 54 0 0 chr1 27350099 27350228 -169845204 + (GGGAGA)n Simple_repeat Simple_repeat 6 135 0 4 793 543 140 51 65 chr1 27350290 27350647 -169844785 + GA-rich Low_complexity Low_complexity 1 351 0 4 793 1192 39 5 43 chr1 27350647 27350834 -169844598 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 793 252 86 0 0 chr1 27350842 27350877 -169844555 + (CAAGA)n Simple_repeat Simple_repeat 3 37 0 4 793 2211 179 49 24 chr1 27351232 27351684 -169843748 + Lx2B LINE L1 6536 6998 -2 4 793 1520 82 14 0 chr1 27352062 27352270 -169843162 - Lx3_Mus LINE L1 -539 6470 6260 4 793 915 10 0 0 chr1 27352278 27352382 -169843050 + (GGAAA)n Simple_repeat Simple_repeat 3 106 0 4 793 252 86 0 0 chr1 27352384 27352419 -169843013 + (CAAGA)n Simple_repeat Simple_repeat 3 37 0 4 793 2140 97 30 3 chr1 27352520 27352851 -169842581 - Lx3_Mus LINE L1 -755 6254 5915 4 793 1102 90 0 0 chr1 27352857 27353001 -169842431 - B1_Mus1 SINE Alu -4 144 1 4 793 1241 108 78 5 chr1 27353001 27353205 -169842227 - L1_Mur1 LINE L1 -628 5258 5040 4 793 3147 124 4 25 chr1 27353205 27353733 -169841699 + Lx3A LINE L1 6465 6981 0 4 793 740 280 62 38 chr1 27353815 27354183 -169841249 - MTE2a LTR MaLR 0 379 3 4 793 229 294 8 48 chr1 27355150 27355275 -169840157 + (TATATG)n Simple_repeat Simple_repeat 5 124 0 4 793 263 208 13 40 chr1 27355197 27355272 -169840160 + (TATG)n Simple_repeat Simple_repeat 4 76 0 4 793 345 24 0 0 chr1 27355413 27355455 -169839977 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 793 2143 112 81 0 chr1 27356094 27356441 -169838991 - L1_Mus3 LINE L1 -6 6632 6258 4 793 222 350 38 68 chr1 27356464 27356596 -169838836 - B4 SINE B4 -69 223 96 4 793 25 99 0 0 chr1 27356631 27356712 -169838720 + AT_rich Low_complexity Low_complexity 1 81 0 4 793 392 303 10 0 chr1 27356783 27356882 -169838550 + B1_Mur1 SINE Alu 43 142 -7 4 793 315 0 0 0 chr1 27356908 27356943 -169838489 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 793 28 29 0 0 chr1 27357885 27357920 -169837512 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 540 170 0 0 chr1 27358563 27358669 -169836763 + GA-rich Low_complexity Low_complexity 1 106 0 4 793 1969 188 82 67 chr1 27358841 27359319 -169836113 - RMER1B Other Other -2 1064 580 4 793 1929 144 58 3 chr1 27359893 27360241 -169835191 - Lx2A1 LINE L1 -8 7000 6634 4 793 351 361 54 15 chr1 27360430 27360635 -169834797 + MLT2F LTR ERVL 365 577 -86 4 793 965 211 16 16 chr1 27360961 27361149 -169834283 + B3 SINE B2 2 189 -27 4 793 6559 82 3 7 chr1 27362920 27363799 -169831633 - L1_Mus2 LINE L1 0 6566 5691 4 793 975 102 0 0 chr1 27363800 27363937 -169831495 + L1_Mus2 LINE L1 5561 5697 -186 4 793 231 153 0 13 chr1 27363937 27363989 -169831443 - B3A SINE B2 -146 49 1 4 793 2441 99 118 36 chr1 27364453 27364892 -169830540 + IAPLTR2_Mm LTR ERVK 1 475 0 4 793 473 318 0 30 chr1 27365243 27365376 -169830056 + B3A SINE B2 70 198 0 4 793 359 269 59 12 chr1 27365760 27365929 -169829503 - L1MA4A LINE L1 -399 5904 5728 4 793 225 310 0 0 chr1 27366069 27366156 -169829276 - L1P5 LINE L1 -531 5625 5539 4 793 275 226 59 12 chr1 27367354 27367435 -169827997 - PB1D10 SINE Alu 0 117 33 4 793 5309 148 43 9 chr1 27367435 27368390 -169827042 + Lx2 LINE L1 6010 6996 -1 4 793 3387 145 171 77 chr1 27368572 27369400 -169826032 - RMER17A2 LTR ERVK 0 906 1 4 793 204 100 0 0 chr1 27369770 27369800 -169825632 + (TTC)n Simple_repeat Simple_repeat 1 30 0 4 793 427 246 6 6 chr1 27369804 27369984 -169825448 + CT-rich Low_complexity Low_complexity 1 180 0 4 793 23 0 0 0 chr1 27370649 27370672 -169824760 + AT_rich Low_complexity Low_complexity 1 23 0 4 793 29 70 0 0 chr1 27370921 27370978 -169824454 + AT_rich Low_complexity Low_complexity 1 57 0 4 793 233 151 19 0 chr1 27371070 27371123 -169824309 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 793 315 342 21 4 chr1 27371172 27371440 -169823992 - L1MA5 LINE L1 -348 5952 5660 4 793 26524 69 4 14 chr1 27371577 27375217 -169820215 - L1Md_F3 LINE L1 -941 5879 2307 4 793 5803 49 7 20 chr1 27375218 27375919 -169819513 - L1Md_F3 LINE L1 -15 6569 5878 4 793 1664 26 0 0 chr1 27375919 27376110 -169819322 - B2_Mm1a SINE B2 -1 192 2 4 793 5803 49 7 20 chr1 27376110 27376164 -169819268 - L1Md_F3 LINE L1 -707 5877 5824 4 793 7581 68 3 0 chr1 27376155 27377128 -169818304 + L1Md_F2 LINE L1 5604 6579 -3 4 793 25 65 0 0 chr1 27377305 27377351 -169818081 + AT_rich Low_complexity Low_complexity 1 46 0 4 793 255 295 43 26 chr1 27377398 27377513 -169817919 - L1MA5 LINE L1 -844 5299 5183 4 793 226 282 0 0 chr1 27377520 27377598 -169817834 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 4 793 390 342 39 16 chr1 27377733 27377991 -169817441 - L1MA5 LINE L1 -1121 5022 4759 4 793 1503 286 88 19 chr1 27377993 27378736 -169816696 - Lx6 LINE L1 -6 7454 6585 4 793 213 39 0 0 chr1 27378962 27378988 -169816444 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 793 225 0 0 0 chr1 27379293 27379318 -169816114 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 793 315 0 0 0 chr1 27379319 27379354 -169816078 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 793 412 321 60 0 chr1 27379377 27379511 -169815921 - B4 SINE B4 -96 196 55 4 793 261 0 0 0 chr1 27380503 27380532 -169814900 + (T)n Simple_repeat Simple_repeat 1 29 0 4 793 414 39 0 0 chr1 27381173 27381225 -169814207 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 793 323 354 94 79 chr1 27381532 27381860 -169813572 - LTR52 LTR ERVL -78 343 11 4 793 649 287 12 0 chr1 27381893 27382057 -169813375 + MT2A LTR ERVL 1 166 -367 4 793 5984 102 5 2 chr1 27382250 27383102 -169812330 - L1_Mus3 LINE L1 -2 6636 5783 4 793 21600 150 23 89 chr1 27383108 27388536 -169806896 - L1_Mus1 LINE L1 0 6567 1566 4 793 617 58 12 0 chr1 27388536 27388622 -169806810 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 793 7855 165 117 8 chr1 27388622 27389728 -169805704 - L1VL2 LINE L1 -2361 1254 10 4 793 234 327 91 26 chr1 27389760 27389914 -169805518 + Lx8 LINE L1 7110 7273 -200 4 793 1899 200 35 175 chr1 27390475 27391275 -169804157 + RMER6C LTR ERVK 1 688 -2 4 793 3641 119 2 0 chr1 27391442 27391961 -169803471 + Lx3B LINE L1 6339 6858 -115 4 793 28 102 0 0 chr1 27392963 27393061 -169802371 + AT_rich Low_complexity Low_complexity 1 98 0 4 793 375 78 0 0 chr1 27393104 27393155 -169802277 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 99 1727 201 50 8 chr1 27393687 27394063 -169801369 - ORR1B1 LTR MaLR -2 392 1 4 794 10316 174 25 3 chr1 27395270 27397190 -169798242 - L1_Mm LINE L1 -176 5707 3744 4 794 192 40 0 0 chr1 27397191 27397216 -169798216 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4 794 375 23 0 0 chr1 27397216 27397260 -169798172 + (TTA)n Simple_repeat Simple_repeat 3 46 0 4 794 1025 63 21 69 chr1 27397270 27397458 -169797974 - L1_Mus3 LINE L1 -28 6610 6432 4 794 335 207 500 0 chr1 27397552 27397692 -169797740 - B3 SINE B2 -6 210 1 4 794 27 49 0 0 chr1 27398187 27398228 -169797204 + AT_rich Low_complexity Low_complexity 1 41 0 4 794 238 157 39 0 chr1 27398538 27398589 -169796843 - L1M2 LINE L1 -374 5917 5865 4 794 2199 89 41 6 chr1 27398640 27398957 -169796475 + L1_Mus1 LINE L1 6240 6567 0 4 794 219 69 0 0 chr1 27398981 27399010 -169796422 + (A)n Simple_repeat Simple_repeat 1 29 0 4 794 1261 256 58 20 chr1 27399010 27399353 -169796079 + ORR1B2 LTR MaLR 12 367 0 5 794 369 197 0 0 chr1 27399897 27399973 -169795459 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 794 6055 99 37 18 chr1 27400077 27401023 -169794409 - Lx3_Mus LINE L1 0 7009 6046 5 794 2856 67 59 0 chr1 27401534 27401908 -169793524 + MTA_Mm LTR MaLR 1 396 0 5 794 457 347 113 9 chr1 27402185 27402531 -169792901 - Lx8 LINE L1 -365 7108 6727 5 794 449 313 142 26 chr1 27402591 27402893 -169792539 - Lx8 LINE L1 -853 6620 6284 5 794 446 49 0 16 chr1 27402989 27403051 -169792381 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 794 4345 215 58 17 chr1 27403169 27404303 -169791129 + Lx4B LINE L1 5769 7022 -36 5 794 477 0 0 0 chr1 27406138 27406191 -169789241 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 794 201 178 0 0 chr1 27406842 27406887 -169788545 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 794 1732 344 100 32 chr1 27408862 27409775 -169785657 - ORR1D1-int LTR MaLR -436 1144 169 5 794 726 96 0 0 chr1 27409775 27409879 -169785553 + (TG)n Simple_repeat Simple_repeat 2 105 0 5 794 1732 344 100 32 chr1 27409879 27410007 -169785425 - ORR1D1-int LTR MaLR -1412 168 33 5 794 225 238 102 45 chr1 27410038 27410126 -169785306 - ORR1D1 LTR MaLR -2 377 285 5 794 213 65 0 0 chr1 27410392 27410423 -169785009 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 794 1299 206 150 45 chr1 27410894 27411608 -169783824 + RMER6C LTR ERVK 1 675 -15 5 794 753 262 4 111 chr1 27411684 27411798 -169783634 - ORR1D1 LTR MaLR -104 270 170 5 794 284 102 20 0 chr1 27411798 27411847 -169783585 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 5 794 753 262 4 111 chr1 27411847 27411985 -169783447 - ORR1D1 LTR MaLR -205 169 45 5 794 4682 127 30 9 chr1 27412593 27412867 -169782565 - L1_Mm LINE L1 -362 5521 5250 5 794 513 0 0 0 chr1 27412867 27412924 -169782508 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 794 4682 127 30 9 chr1 27412924 27413420 -169782012 - L1_Mm LINE L1 -634 5249 4735 5 794 3684 110 6 2 chr1 27413421 27413951 -169781481 + L1_Mus3 LINE L1 6101 6632 -6 5 794 34 55 0 0 chr1 27414075 27414130 -169781302 + AT_rich Low_complexity Low_complexity 1 55 0 5 794 405 0 0 0 chr1 27414130 27414175 -169781257 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 794 243 379 127 8 chr1 27414656 27414901 -169780531 - L1M4b LINE L1 -6922 412 139 5 794 336 48 0 0 chr1 27415019 27415061 -169780371 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 794 339 326 69 7 chr1 27415751 27415896 -169779536 - B3 SINE B2 -3 213 60 5 794 455 284 56 14 chr1 27416024 27416167 -169779265 + B3 SINE B2 40 188 -28 5 794 2631 99 3 0 chr1 27416306 27416671 -169778761 - L1_Mm LINE L1 -196 5687 5322 5 794 3005 72 5 3 chr1 27416671 27417063 -169778369 + L1_Mus1 LINE L1 6169 6561 -6 5 794 384 22 0 0 chr1 27417513 27417558 -169777874 + (CATA)n Simple_repeat Simple_repeat 1 45 0 5 794 374 206 0 21 chr1 27417767 27417861 -169777571 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 5 794 2216 172 57 39 chr1 27418155 27418941 -169776491 + RMER6C LTR ERVK 1 754 -2 5 794 1492 229 135 38 chr1 27419770 27420223 -169775209 + RLTR11A LTR ERVK 1 497 -31 5 794 24 67 0 0 chr1 27421319 27421364 -169774068 + AT_rich Low_complexity Low_complexity 1 45 0 5 794 239 50 0 48 chr1 27421931 27421973 -169773459 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 794 207 0 0 0 chr1 27423019 27423042 -169772390 + (A)n Simple_repeat Simple_repeat 1 23 0 5 794 254 152 75 15 chr1 27423500 27423567 -169771865 - Lx9 LINE L1 0 7644 7574 5 794 359 141 94 0 chr1 27423582 27423646 -169771786 - Lx9 LINE L1 -193 7451 7382 5 794 3041 36 76 9 chr1 27423824 27424260 -169771172 - IAPLTR2_Mm LTR ERVK -20 455 1 5 794 1812 264 27 21 chr1 27424260 27424772 -169770660 - Lx9 LINE L1 -496 7148 6634 5 794 1925 207 73 95 chr1 27425209 27425754 -169769678 + RMER16 LTR ERVK 1 533 0 5 794 364 231 43 11 chr1 27426178 27426270 -169769162 - Lx4B LINE L1 -354 6704 6610 5 794 642 279 129 0 chr1 27426269 27426502 -169768930 + Lx3C LINE L1 6711 6973 -3 5 794 5045 47 0 2 chr1 27426595 27427213 -169768219 + L1Md_F3 LINE L1 5954 6570 -14 5 794 465 122 0 0 chr1 27427340 27427414 -169768018 + (TA)n Simple_repeat Simple_repeat 1 74 0 5 794 232 264 15 23 chr1 27427423 27427453 -169767979 + (TAGA)n Simple_repeat Simple_repeat 2 31 0 5 794 246 62 0 0 chr1 27427453 27427485 -169767947 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 794 232 264 15 23 chr1 27427485 27427586 -169767846 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 5 794 21 71 0 0 chr1 27428482 27428524 -169766908 + AT_rich Low_complexity Low_complexity 1 42 0 5 794 335 284 70 16 chr1 27429380 27429509 -169765923 + RMER15 LTR ERVL 27 162 -413 5 794 865 249 19 62 chr1 27429556 27429634 -169765798 + RMER15 LTR ERVL 265 341 -234 5 794 1897 115 32 74 chr1 27429634 27429973 -169765459 - ORR1A2 LTR MaLR -2 325 1 5 794 865 249 19 62 chr1 27429973 27430151 -169765281 + RMER15 LTR ERVL 342 510 -65 5 794 303 28 0 0 chr1 27430488 27430524 -169764908 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5 794 5081 165 37 17 chr1 27430526 27431481 -169763951 - Lx3C LINE L1 -6 6970 5997 5 794 269 373 24 89 chr1 27431669 27431837 -169763595 + B4A SINE B4 5 161 -131 5 794 211 297 52 39 chr1 27431779 27431856 -169763576 + B1F2 SINE Alu 23 100 -49 5 794 195 42 0 0 chr1 27431949 27431973 -169763459 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 794 546 16 0 0 chr1 27431992 27432055 -169763377 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 794 180 0 0 0 chr1 27432055 27432074 -169763358 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 794 225 0 0 0 chr1 27432486 27432511 -169762921 + (TATG)n Simple_repeat Simple_repeat 2 26 0 5 794 286 296 123 35 chr1 27432511 27432739 -169762693 - Lx9 LINE L1 -1731 5913 5666 5 794 679 345 62 11 chr1 27432745 27432894 -169762538 - Lx8 LINE L1 -270 7203 7053 5 794 243 0 0 0 chr1 27432894 27432921 -169762511 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 794 679 345 62 11 chr1 27432921 27433143 -169762289 - Lx8 LINE L1 -421 7052 6814 5 794 2455 319 59 56 chr1 27433400 27434814 -169760618 + Lx5 LINE L1 5610 7028 -22 5 794 192 97 0 0 chr1 27434845 27434876 -169760556 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 794 347 335 101 105 chr1 27435785 27435978 -169759454 + B4A SINE B4 17 226 -66 5 794 495 0 0 0 chr1 27435978 27436033 -169759399 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 5 794 347 335 101 105 chr1 27436033 27436052 -169759380 + B4A SINE B4 227 227 -65 5 794 447 19 0 0 chr1 27436052 27436104 -169759328 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 794 347 335 101 105 chr1 27436104 27436167 -169759265 + B4A SINE B4 227 292 0 5 794 1382 231 223 23 chr1 27436350 27436970 -169758462 - Lx7 LINE L1 -1282 6414 5671 5 794 917 280 64 38 chr1 27436941 27437283 -169758149 + L1_Mur3 LINE L1 32 382 -7346 5 794 382 313 29 63 chr1 27437281 27437455 -169757977 + Lx5 LINE L1 6878 7045 -5 5 794 1387 212 44 33 chr1 27437473 27437927 -169757505 + L1_Mur3 LINE L1 1182 1651 -4229 5 794 250 220 0 0 chr1 27437945 27437995 -169757437 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 794 330 143 0 0 chr1 27438609 27438686 -169756746 + (T)n Simple_repeat Simple_repeat 1 77 0 5 794 1085 89 0 7 chr1 27438686 27438833 -169756599 - B1_Mm SINE Alu 0 147 2 5 794 223 157 39 0 chr1 27439258 27439309 -169756123 + A-rich Low_complexity Low_complexity 2 54 0 5 794 419 35 18 0 chr1 27439704 27439761 -169755671 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 794 314 184 0 13 chr1 27440138 27440215 -169755217 + CT-rich Low_complexity Low_complexity 3 78 0 5 794 552 256 75 0 chr1 27440219 27440352 -169755080 - B1_Mus2 SINE Alu 0 147 5 5 794 450 94 0 0 chr1 27440400 27440464 -169754968 + (CTCTG)n Simple_repeat Simple_repeat 4 67 0 5 794 573 15 0 0 chr1 27440464 27440530 -169754902 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 5 794 3222 53 2 2 chr1 27440933 27441329 -169754103 - MTA_Mm LTR MaLR 0 396 1 5 794 993 122 0 0 chr1 27441329 27441468 -169753964 + B1_Mm SINE Alu 3 141 -6 5 794 891 297 141 32 chr1 27441568 27442284 -169753148 - Lx9 LINE L1 -4 7640 6847 5 794 221 235 0 0 chr1 27442587 27442638 -169752794 + GA-rich Low_complexity Low_complexity 2 52 0 5 794 221 53 0 50 chr1 27442641 27442681 -169752751 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 5 794 577 261 116 91 chr1 27443506 27443738 -169751694 + MTD LTR MaLR 163 401 -18 5 794 2545 294 53 102 chr1 27443738 27445058 -169750374 + MTD-int LTR MaLR 1 1255 -3 5 794 189 0 0 0 chr1 27445076 27445097 -169750335 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 794 1655 260 46 8 chr1 27445103 27445495 -169749937 + MTD LTR MaLR 13 419 0 5 794 325 360 50 11 chr1 27446328 27446508 -169748924 - ID_B1 SINE B4 -34 190 4 5 794 417 272 102 24 chr1 27446631 27447030 -169748402 - L1M5 LINE L1 -664 5780 5339 5 794 495 0 0 0 chr1 27448335 27448390 -169747042 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 794 556 313 30 10 chr1 27448440 27448643 -169746789 - B3 SINE B2 -5 211 5 5 794 814 209 20 65 chr1 27449370 27449618 -169745814 + RMER6D LTR ERVK 565 720 0 5 794 209 211 0 0 chr1 27450123 27450161 -169745271 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 5 794 2309 98 3 34 chr1 27450834 27451183 -169744249 + L1_Mus1 LINE L1 6229 6566 -1 5 794 331 341 92 70 chr1 27451465 27451545 -169743887 - RMER15-int LTR ERVL -3361 1638 1562 5 794 1667 191 14 114 chr1 27451545 27451983 -169743449 + ORR1B1 LTR MaLR 1 394 0 5 794 331 341 92 70 chr1 27451983 27452347 -169743085 - RMER15-int LTR ERVL -3438 1561 1184 5 794 7120 93 4 18 chr1 27452350 27453940 -169741492 - L1Md_F2 LINE L1 0 6582 5014 5 794 617 62 0 0 chr1 27453940 27454020 -169741412 + L1_Mm LINE L1 3159 3238 -2645 5 794 1708 168 87 51 chr1 27454026 27454477 -169740955 - IAPLTR2_Mm LTR ERVK -8 467 1 5 794 12919 86 2 1 chr1 27454477 27456272 -169739160 + L1_Mm LINE L1 3233 5029 -854 5 794 471 359 86 24 chr1 27456885 27457176 -169738256 - RMER15-int LTR ERVL -4484 515 207 5 794 3124 181 66 3 chr1 27458274 27458877 -169736555 + Lx2B LINE L1 6358 6998 -2 5 794 24 32 0 0 chr1 27458963 27458994 -169736438 + AT_rich Low_complexity Low_complexity 1 31 0 5 794 1198 120 6 0 chr1 27459127 27459302 -169736130 + Lx3A LINE L1 5711 5886 -1095 5 794 723 282 113 84 chr1 27459722 27460066 -169735366 - ORR1E LTR MaLR -5 354 1 5 794 29213 61 8 1 chr1 27460175 27464748 -169730684 - L1Md_F2 LINE L1 0 6582 1979 5 794 393 22 0 0 chr1 27465643 27465689 -169729743 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 794 282 29 0 0 chr1 27465689 27465723 -169729709 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 794 333 0 0 0 chr1 27465902 27465939 -169729493 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 794 3276 80 0 53 chr1 27465941 27466415 -169729017 - L1_Mus1 LINE L1 -6 6561 6113 6 794 23 33 0 0 chr1 27466473 27466503 -169728929 + AT_rich Low_complexity Low_complexity 1 30 0 6 794 299 310 68 42 chr1 27466510 27466820 -169728612 - L1MA8 LINE L1 -37 6254 5937 6 794 243 333 0 0 chr1 27467127 27467202 -169728230 + ORR1E LTR MaLR 275 349 -10 6 794 280 253 62 24 chr1 27468090 27468258 -169727174 - L1MA8 LINE L1 -12 6300 6115 6 794 1123 71 0 0 chr1 27468911 27469052 -169726380 + B1_Mm SINE Alu 1 141 -6 6 794 450 0 0 0 chr1 27469054 27469104 -169726328 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 6 794 327 273 96 29 chr1 27469308 27469444 -169725988 + HERV16-int LTR ERVL 313 457 -4539 6 794 617 327 60 0 chr1 27470253 27470501 -169724931 + Lx8 LINE L1 6641 6903 -570 6 794 240 383 71 11 chr1 27470541 27470808 -169724624 + Lx8 LINE L1 7165 7447 -26 6 794 324 70 0 0 chr1 27470981 27471024 -169724408 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 794 523 133 0 39 chr1 27471025 27471127 -169724305 - Lx3A LINE L1 -9 6972 6875 6 794 3119 122 21 4 chr1 27471127 27471604 -169723828 + Lx3A LINE L1 6381 6865 -116 6 794 1502 210 234 48 chr1 27472383 27473072 -169722360 + RMER6C LTR ERVK 1 716 -4 6 794 1424 231 155 117 chr1 27473654 27474227 -169721205 + RMER19B LTR ERVK 308 902 0 6 794 1177 224 22 86 chr1 27474549 27474937 -169720495 - ORR1A4 LTR MaLR -2 392 1 6 794 26 30 0 0 chr1 27475041 27475074 -169720358 + AT_rich Low_complexity Low_complexity 1 33 0 6 794 1343 142 4 36 chr1 27475074 27475322 -169720110 - Lx LINE L1 -3 6651 6412 6 794 22 80 0 0 chr1 27475425 27475475 -169719957 + AT_rich Low_complexity Low_complexity 1 50 0 6 794 413 19 0 18 chr1 27476061 27476116 -169719316 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 794 24 0 0 0 chr1 27476331 27476355 -169719077 + AT_rich Low_complexity Low_complexity 1 24 0 6 794 348 179 0 0 chr1 27476612 27476668 -169718764 + Lx LINE L1 5654 5709 -1341 6 794 1117 96 0 0 chr1 27476817 27476974 -169718458 + L1_Mus2 LINE L1 6410 6566 0 6 794 253 322 0 0 chr1 27477039 27477129 -169718303 + MURVY-int LTR ERV1 1353 1442 -6010 6 794 2763 151 10 19 chr1 27477235 27477749 -169717683 - L1_Mur1 LINE L1 -1877 4009 3501 6 794 604 181 28 91 chr1 27477752 27477928 -169717504 + Lx LINE L1 6474 6638 -16 6 794 510 344 79 75 chr1 27478076 27478519 -169716913 + MMERGLN-int LTR ERV1 2987 3421 -4135 6 794 2082 118 42 3 chr1 27478519 27478634 -169716798 - Lx LINE L1 -6 6648 6535 6 794 234 0 0 0 chr1 27478634 27478660 -169716772 + (CCCA)n Simple_repeat Simple_repeat 2 27 0 6 794 2082 118 42 3 chr1 27478660 27478876 -169716556 - Lx LINE L1 -120 6534 6305 6 794 510 343 82 78 chr1 27478876 27479218 -169716214 + MMERGLN-int LTR ERV1 3422 3757 -3799 6 794 418 337 38 22 chr1 27479185 27479452 -169715980 + MMERGLN-int LTR ERV1 3930 4200 -3401 6 794 353 298 24 8 chr1 27480163 27480288 -169715144 + RLTR14-int LTR ERV1 3739 3865 -1452 6 794 309 322 52 9 chr1 27480199 27480315 -169715117 + RLTR19-int LTR ERVK 4376 4496 -1641 6 794 2020 209 123 18 chr1 27480535 27481074 -169714358 - RMER17B LTR ERVK -389 569 1 6 794 1794 165 31 3 chr1 27481172 27481495 -169713937 + RLTR23 LTR ERV1 99 430 0 6 794 3907 112 5 0 chr1 27481560 27482129 -169713303 - L1_Mus3 LINE L1 -8 6630 6059 6 794 1555 116 16 12 chr1 27482129 27482374 -169713058 - L1_Mus3 LINE L1 -704 5862 5617 6 794 3161 99 0 2 chr1 27482364 27482828 -169712604 - L1_Mm LINE L1 -3915 1968 1506 6 794 610 138 17 0 chr1 27482828 27482944 -169712488 + L1_Mus3 LINE L1 6514 6631 -7 6 794 1363 219 50 94 chr1 27483006 27483389 -169712043 + ORR1C1 LTR MaLR 13 378 0 6 794 609 336 74 65 chr1 27483448 27483531 -169711901 + Lx9 LINE L1 6823 6891 -753 6 794 3808 88 2 15 chr1 27483531 27484073 -169711359 - L1Md_F2 LINE L1 -6 6576 6042 6 794 609 336 74 65 chr1 27484073 27484648 -169710784 + Lx9 LINE L1 6892 7487 -157 6 794 577 114 9 9 chr1 27484694 27484809 -169710623 + (TA)n Simple_repeat Simple_repeat 1 115 0 6 794 239 233 65 22 chr1 27485612 27485704 -169709728 + MER2 DNA MER2_type 95 190 -155 6 794 324 188 0 0 chr1 27485841 27485905 -169709527 + (TATG)n Simple_repeat Simple_repeat 1 64 0 6 794 465 76 0 0 chr1 27486272 27486338 -169709094 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 794 26 50 0 0 chr1 27486858 27486898 -169708534 + AT_rich Low_complexity Low_complexity 1 40 0 6 794 22 0 0 0 chr1 27487019 27487041 -169708391 + AT_rich Low_complexity Low_complexity 1 22 0 6 794 462 36 0 0 chr1 27487198 27487254 -169708178 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 794 24 0 0 0 chr1 27487324 27487348 -169708084 + AT_rich Low_complexity Low_complexity 1 24 0 6 794 470 197 8 0 chr1 27488373 27488495 -169706937 + (CA)n Simple_repeat Simple_repeat 1 123 0 6 794 274 364 16 25 chr1 27488789 27488910 -169706522 + PB1 SINE Alu 6 125 -2 6 794 866 72 94 8 chr1 27488969 27489096 -169706336 + B1_Mus2 SINE Alu 1 138 -9 6 794 240 247 0 25 chr1 27489107 27489186 -169706246 + A-rich Low_complexity Low_complexity 1 77 0 6 794 1125 88 0 0 chr1 27489555 27489714 -169705718 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 6 794 934 104 52 0 chr1 27489714 27489848 -169705584 - B1_Mus1 SINE Alu -5 143 3 6 794 270 54 0 67 chr1 27489851 27489911 -169705521 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 6 794 7429 68 6 6 chr1 27490333 27491689 -169703743 - L1Md_F2 LINE L1 0 6582 5226 6 794 3615 92 5 2 chr1 27491698 27492255 -169703177 - L1Md_F LINE L1 -3793 2090 1532 6 794 4610 135 68 37 chr1 27492252 27492490 -169702942 - L1Md_F LINE L1 -5413 1203 947 6 794 375 41 0 0 chr1 27492490 27492539 -169702893 + (TTATG)n Simple_repeat Simple_repeat 4 52 0 6 794 1094 75 0 20 chr1 27492549 27492698 -169702734 - B1_Mm SINE Alu -1 146 1 6 794 4610 135 68 37 chr1 27492698 27493263 -169702169 - L1Md_F LINE L1 -5670 946 364 6 794 1338 333 126 38 chr1 27493514 27494418 -169701014 + Lx8 LINE L1 6460 7443 -30 6 794 471 378 58 48 chr1 27495721 27496030 -169699402 + MTE-int LTR MaLR 991 1302 -278 6 794 240 35 0 0 chr1 27496561 27496590 -169698842 + (A)n Simple_repeat Simple_repeat 1 29 0 6 794 244 295 51 0 chr1 27496594 27496672 -169698760 + B4A SINE B4 189 270 -22 6 794 25 31 0 0 chr1 27496923 27496955 -169698477 + AT_rich Low_complexity Low_complexity 1 32 0 6 794 2352 84 0 12 chr1 27497348 27497684 -169697748 + L1Md_F2 LINE L1 6249 6580 -2 6 794 334 227 44 36 chr1 27497771 27497908 -169697524 - Lx9 LINE L1 -4 7640 7503 6 794 1738 252 10 18 chr1 27497916 27498315 -169697117 + MTB_Mm LTR MaLR 4 399 -8 6 794 2809 228 45 13 chr1 27498318 27498452 -169696980 + MTB_Mm-int LTR MaLR 2 151 -1107 6 794 4554 141 53 15 chr1 27498452 27499261 -169696171 + Lx LINE L1 5815 6654 0 6 794 2809 228 45 13 chr1 27499261 27499805 -169695627 + MTB_Mm-int LTR MaLR 152 702 -556 6 794 1466 72 10 0 chr1 27499805 27500000 -169695432 - IAPEY_LTR LTR ERVK -3 382 186 6 794 1386 60 0 0 chr1 27500000 27500185 -169695247 - IAPEY_LTR LTR ERVK -200 185 1 1 794 1567 210 122 23 chr1 27500185 27500580 -169694852 + MTC-int LTR MaLR 697 1130 -128 2 794 1405 224 45 0 chr1 27500654 27500967 -169694465 - Lx3C LINE L1 -2 6974 6648 3 794 394 160 27 0 chr1 27500968 27501043 -169694389 + MTC-int LTR MaLR 1182 1258 0 2 794 1548 221 87 10 chr1 27501045 27501434 -169693998 + MTC LTR MaLR 3 421 0 2 794 1076 278 94 27 chr1 27501434 27501882 -169693550 - Lx9 LINE L1 -154 7490 7013 4 794 560 238 129 18 chr1 27501899 27502062 -169693370 - Lx9 LINE L1 -718 6926 6746 4 794 23 0 0 0 chr1 27502744 27502767 -169692665 + AT_rich Low_complexity Low_complexity 1 23 0 5 794 236 291 82 0 chr1 27503234 27503344 -169692088 + L1M2 LINE L1 2216 2334 -3809 6 794 225 204 0 0 chr1 27503544 27503593 -169691839 + L1M2 LINE L1 3890 3938 -2202 6 794 243 61 0 0 chr1 27503792 27503825 -169691607 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 794 4799 91 15 9 chr1 27504727 27505412 -169690020 - L1Md_F2 LINE L1 -14 6568 5880 8 794 4600 79 2 5 chr1 27505412 27506035 -169689397 + L1Md_F2 LINE L1 5245 5865 -18 8 794 2922 284 56 67 chr1 27506512 27507714 -169687718 - Lx7 LINE L1 -285 7411 6224 9 794 207 69 0 0 chr1 27507728 27507757 -169687675 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 794 1250 236 38 3 chr1 27507758 27508077 -169687355 - Lx7 LINE L1 -1694 6002 5673 9 794 703 288 30 20 chr1 27508077 27508279 -169687153 + MTD LTR MaLR 214 417 -2 1 794 1605 239 49 122 chr1 27508281 27508992 -169686440 - Lx7 LINE L1 -278 5602 4944 9 794 368 200 22 76 chr1 27509000 27509092 -169686340 - Lx7 LINE L1 -637 7059 6973 1 794 1181 207 148 95 chr1 27509629 27510135 -169685297 + L1_Mur3 LINE L1 4391 4923 -957 1 794 515 291 73 0 chr1 27510137 27510302 -169685130 + L1_Mur3 LINE L1 245 421 -7291 1 794 31 76 0 0 chr1 27510983 27511049 -169684383 + AT_rich Low_complexity Low_complexity 1 66 0 1 794 28 91 0 0 chr1 27511616 27511693 -169683739 + AT_rich Low_complexity Low_complexity 1 77 0 1 794 1153 299 44 22 chr1 27512160 27512570 -169682862 - MTD LTR MaLR 0 419 1 1 794 381 58 0 0 chr1 27512723 27512775 -169682657 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 794 450 0 0 0 chr1 27512779 27512829 -169682603 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 794 311 238 75 0 chr1 27512934 27513014 -169682418 - MTB LTR MaLR -36 364 279 2 794 1040 272 192 65 chr1 27513011 27513760 -169681672 - MTC-int LTR MaLR -414 844 1 2 794 486 328 147 5 chr1 27513760 27514048 -169681384 - MTC LTR MaLR 0 419 62 2 794 435 89 89 0 chr1 27514291 27514381 -169681051 + GA-rich Low_complexity Low_complexity 4 101 0 2 794 259 299 26 0 chr1 27514393 27514470 -169680962 - MTC LTR MaLR -335 86 8 2 794 2445 68 65 0 chr1 27514660 27514985 -169680447 - ORR1A1 LTR MaLR 0 346 1 2 794 3016 168 0 4 chr1 27515040 27515578 -169679854 - L1_Mur2 LINE L1 -1382 4495 3960 2 794 2405 105 54 0 chr1 27516619 27516989 -169678443 - BGLII_Mus LTR ERVK 0 422 33 2 794 2952 45 0 68 chr1 27516989 27517164 -169678268 + MTA_Mm LTR MaLR 1 175 -221 2 794 7509 42 2 5 chr1 27517164 27518096 -169677336 + L1Md_F3 LINE L1 5656 6584 0 2 794 2952 45 0 68 chr1 27518096 27518345 -169677087 + MTA_Mm LTR MaLR 176 396 0 2 794 258 54 0 0 chr1 27518345 27518381 -169677051 - BGLII_Mus LTR ERVK -385 37 2 2 794 21 0 0 0 chr1 27518937 27518958 -169676474 + AT_rich Low_complexity Low_complexity 1 21 0 2 794 198 0 0 0 chr1 27519066 27519088 -169676344 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 794 1336 241 18 42 chr1 27519091 27519425 -169676007 + ORR1B2 LTR MaLR 1 326 -41 3 794 1574 258 62 5 chr1 27520149 27520535 -169674897 + MTC LTR MaLR 14 421 0 3 794 532 227 30 15 chr1 27520843 27520977 -169674455 - MTE-int LTR MaLR -73 1507 1372 3 794 3057 80 7 0 chr1 27521096 27521511 -169673921 - L1_Mus1 LINE L1 -1 6566 6149 3 794 464 289 60 64 chr1 27521614 27521847 -169673585 + MER77 LTR ERVL 259 490 -117 3 794 417 356 54 17 chr1 27521885 27522125 -169673307 - MTE-int LTR MaLR -223 1357 1109 3 794 239 349 152 61 chr1 27522242 27522584 -169672848 - MTE-int LTR MaLR -825 755 383 3 794 654 37 0 0 chr1 27522948 27523029 -169672403 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 3 794 275 392 51 0 chr1 27523033 27523191 -169672241 - MTE-int LTR MaLR -1398 182 17 3 794 254 343 91 34 chr1 27523385 27523560 -169671872 - ORR1E LTR MaLR -172 187 3 3 794 26 0 0 0 chr1 27523599 27523625 -169671807 + AT_rich Low_complexity Low_complexity 1 26 0 3 794 493 249 71 5 chr1 27524116 27524314 -169671118 + L1MA9 LINE L1 6087 6297 -15 3 794 480 18 0 0 chr1 27524475 27524532 -169670900 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 794 432 0 0 0 chr1 27524532 27524579 -169670853 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 795 1301 286 46 3 chr1 27525962 27526354 -169669078 + MTD LTR MaLR 3 411 -8 4 795 33 25 0 0 chr1 27526531 27526571 -169668861 + AT_rich Low_complexity Low_complexity 1 40 0 4 795 1843 315 42 37 chr1 27526912 27527688 -169667744 - Lx9 LINE L1 -498 7146 6367 4 795 2549 100 36 3 chr1 27527699 27528090 -169667342 + RLTR9E LTR ERVK 1 404 -5 4 795 1484 289 51 60 chr1 27528106 27529017 -169666415 + Lx9 LINE L1 5033 5965 -1679 4 795 189 0 0 0 chr1 27529456 27529477 -169665955 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 795 344 309 52 32 chr1 27529564 27529718 -169665714 - MIRc SINE MIR -109 159 3 4 795 33 56 0 0 chr1 27530007 27530061 -169665371 + AT_rich Low_complexity Low_complexity 1 54 0 4 795 317 301 126 6 chr1 27530986 27531153 -169664279 + B3A SINE B2 2 188 -10 4 795 207 45 21 64 chr1 27531190 27531237 -169664195 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 5 795 186 103 0 0 chr1 27531257 27531286 -169664146 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 795 315 49 0 0 chr1 27533048 27533089 -169662343 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 795 612 224 105 7 chr1 27533105 27533258 -169662174 - Lx4B LINE L1 -18 7040 6873 5 795 2220 168 90 0 chr1 27533271 27533693 -169661739 + L1_Mur2 LINE L1 5412 5871 -6 5 795 524 230 9 0 chr1 27533694 27533805 -169661627 + Lx4B LINE L1 6506 6618 -440 5 795 2531 119 10 3 chr1 27533805 27534192 -169661240 - L1_Mus1 LINE L1 -5 6562 6173 5 795 496 260 16 0 chr1 27534192 27534203 -169661229 + Lx4B LINE L1 6619 6629 -429 5 795 324 0 0 0 chr1 27534992 27535028 -169660404 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 795 1798 176 0 6 chr1 27535096 27535411 -169660021 + ORR1A3 LTR MaLR 6 318 -8 5 795 378 61 0 0 chr1 27536741 27536790 -169658642 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 795 27 29 0 0 chr1 27536890 27536924 -169658508 + AT_rich Low_complexity Low_complexity 1 34 0 6 795 21 0 0 0 chr1 27537355 27537376 -169658056 + AT_rich Low_complexity Low_complexity 1 21 0 6 795 925 195 58 81 chr1 27537787 27538152 -169657280 + RLTRETN_Mm LTR ERVK 1 403 0 6 795 4628 173 28 113 chr1 27538153 27538792 -169656640 + MMETn-int LTR ERVK 1 588 -4256 6 795 627 14 0 0 chr1 27538792 27538864 -169656568 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 795 4628 171 55 82 chr1 27538864 27540312 -169655120 + MMETn-int LTR ERVK 589 2180 -2664 6 795 7834 196 45 35 chr1 27540550 27543535 -169651897 + MMETn-int LTR ERVK 2356 4473 -371 6 795 707 189 173 53 chr1 27543537 27543887 -169651545 + RLTR13B1 LTR ERVK 127 546 -356 6 795 412 62 29 72 chr1 27543887 27543956 -169651476 + ETnERV2-int LTR ERVK 7340 7405 -1 6 795 896 204 52 87 chr1 27543956 27544322 -169651110 + RLTRETN_Mm LTR ERVK 1 409 0 6 795 252 349 75 45 chr1 27544926 27545127 -169650305 - ORR1E LTR MaLR -128 231 25 6 795 1383 101 0 0 chr1 27545484 27545683 -169649749 - L1_Mus1 LINE L1 0 6567 6369 6 795 36 69 0 29 chr1 27545805 27545909 -169649523 + AT_rich Low_complexity Low_complexity 1 101 0 6 795 5286 153 85 4 chr1 27546264 27547233 -169648199 + Lx3B LINE L1 5927 6973 0 6 795 33 94 0 0 chr1 27548488 27548584 -169646848 + AT_rich Low_complexity Low_complexity 1 96 0 7 795 270 0 0 0 chr1 27549693 27549723 -169645709 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 795 312 286 12 0 chr1 27549868 27549952 -169645480 - Lx8 LINE L1 -187 7286 7202 7 795 879 121 15 0 chr1 27550239 27550371 -169645061 + RLTR20A LTR ERVK 1 134 -407 7 795 1319 187 67 64 chr1 27550866 27551180 -169644252 + ORR1A4 LTR MaLR 15 329 0 7 795 234 256 0 93 chr1 27551500 27551586 -169643846 + Charlie11 DNA MER1_type 982 1059 -1137 7 795 186 133 0 0 chr1 27551906 27551936 -169643496 + (TCC)n Simple_repeat Simple_repeat 1 30 0 7 795 33 85 0 0 chr1 27552246 27552328 -169643104 + AT_rich Low_complexity Low_complexity 1 82 0 7 795 587 14 14 0 chr1 27552997 27553069 -169642363 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 7 795 264 333 66 58 chr1 27553070 27553191 -169642241 - B1_Mur1 SINE Alu -1 148 27 7 795 413 373 8 0 chr1 27553084 27553218 -169642214 - ID_B1 SINE B4 -10 214 80 8 795 1538 262 52 20 chr1 27553844 27554245 -169641187 + MTD LTR MaLR 1 414 -5 8 795 222 37 0 0 chr1 27554254 27554281 -169641151 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 795 180 0 0 0 chr1 27555554 27555574 -169639858 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 795 21 36 0 0 chr1 27555811 27555839 -169639593 + AT_rich Low_complexity Low_complexity 1 28 0 8 795 328 343 37 48 chr1 27555878 27556065 -169639367 + B4A SINE B4 47 231 -61 8 795 224 189 0 0 chr1 27556227 27556264 -169639168 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 795 184 104 125 143 chr1 27556904 27556960 -169638472 + MIRm SINE MIR 94 148 -128 8 795 2616 101 0 53 chr1 27557587 27558004 -169637428 + L1Md_F2 LINE L1 6185 6579 -3 8 795 26 30 0 0 chr1 27558004 27558037 -169637395 + AT_rich Low_complexity Low_complexity 1 33 0 8 795 285 270 16 133 chr1 27559038 27559166 -169636266 + B4A SINE B4 178 290 -2 9 795 26 30 0 0 chr1 27559228 27559261 -169636171 + AT_rich Low_complexity Low_complexity 1 33 0 9 795 21 36 0 0 chr1 27559556 27559584 -169635848 + AT_rich Low_complexity Low_complexity 1 28 0 9 795 303 336 84 0 chr1 27559655 27559798 -169635634 + LTR50 LTR ERVL 12 166 -629 9 795 248 184 41 0 chr1 27559841 27559939 -169635493 + (TA)n Simple_repeat Simple_repeat 2 103 0 9 795 203 88 0 29 chr1 27560046 27560081 -169635351 + (GAA)n Simple_repeat Simple_repeat 3 36 0 9 795 1218 78 0 0 chr1 27560108 27560288 -169635144 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 795 1800 156 102 51 chr1 27560336 27560788 -169634644 - IAPLTR2_Mm LTR ERVK 0 475 1 9 795 570 240 7 40 chr1 27560788 27560940 -169634492 - RMER17C LTR ERVK -261 149 3 9 795 2023 149 90 16 chr1 27560941 27561487 -169633945 - RMER17C-int LTR ERVK 0 3238 2653 9 795 414 69 0 0 chr1 27561524 27561582 -169633850 + (TA)n Simple_repeat Simple_repeat 1 58 0 9 795 250 174 32 75 chr1 27561854 27561947 -169633485 - Lx9 LINE L1 -77 7567 7479 1 795 240 202 54 116 chr1 27562006 27562118 -169633314 - Lx9 LINE L1 -1362 6282 6178 1 795 316 348 66 36 chr1 27562294 27562461 -169632971 + Lx8 LINE L1 6213 6384 -1089 1 795 2217 116 222 26 chr1 27562461 27562921 -169632511 - RLTR6_Mm LTR ERV1 -68 586 37 1 795 740 309 72 23 chr1 27563030 27563375 -169632057 + Lx8 LINE L1 6383 6744 -729 1 795 3135 59 2 0 chr1 27563448 27563857 -169631575 - L1Md_A LINE L1 -1330 4553 4144 1 795 15646 96 8 8 chr1 27563850 27566790 -169628642 - L1Md_A LINE L1 -2508 3375 441 1 795 21 36 0 0 chr1 27567172 27567200 -169628232 + AT_rich Low_complexity Low_complexity 1 28 0 1 795 498 33 0 0 chr1 27567623 27567683 -169627749 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 795 405 191 11 0 chr1 27568818 27568907 -169626525 - L1_Mm LINE L1 -568 5315 5226 1 795 8205 145 21 5 chr1 27568944 27570559 -169624873 - Lx3_Mus LINE L1 -11 6998 5360 1 795 207 0 0 0 chr1 27570559 27570582 -169624850 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 795 7002 129 14 3 chr1 27570582 27571159 -169624273 - Lx3_Mus LINE L1 -524 5359 4781 1 795 11100 81 1 23 chr1 27571170 27573431 -169622001 - L1Md_F2 LINE L1 -5 6577 4346 1 795 6739 61 89 0 chr1 27573420 27574353 -169621079 + L1Md_F2 LINE L1 3328 4343 -1540 1 795 6953 142 30 81 chr1 27574350 27575128 -169620304 - L1_Mur1 LINE L1 -1089 4797 4137 1 795 531 0 0 0 chr1 27575128 27575187 -169620245 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 795 6953 142 30 81 chr1 27575187 27575868 -169619564 - L1_Mur1 LINE L1 -1750 4136 3414 1 795 33937 62 8 20 chr1 27575872 27578243 -169617189 - L1Md_F2 LINE L1 -12 6570 4343 1 795 1627 86 0 21 chr1 27578243 27578482 -169616950 - L1Md_F3 LINE L1 0 6584 6351 1 795 33937 77 10 26 chr1 27578482 27582433 -169612999 - L1Md_F2 LINE L1 -1541 4342 360 1 795 309 26 0 0 chr1 27582433 27582471 -169612961 - L1_Mur1 LINE L1 -2461 3425 3388 1 795 2681 141 136 6 chr1 27582468 27583436 -169611996 - L1_Mur1 LINE L1 -4329 1557 209 1 795 216 0 0 0 chr1 27584927 27584951 -169610481 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1 795 4902 121 14 11 chr1 27584960 27585720 -169609712 - L1_Mus4 LINE L1 -6 6630 5868 1 795 852 260 87 12 chr1 27586629 27586975 -169608457 + Lx9 LINE L1 6701 7072 -572 1 795 923 273 73 6 chr1 27587002 27587359 -169608073 + Lx9 LINE L1 7242 7622 -22 1 795 253 264 19 9 chr1 27588231 27588338 -169607094 - Lx9 LINE L1 -1 7643 7536 1 795 552 56 0 0 chr1 27588340 27588412 -169607020 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 795 729 240 75 15 chr1 27588553 27588752 -169606680 - Lx9 LINE L1 -164 7480 7270 1 795 2123 266 70 12 chr1 27589021 27589783 -169605649 - Lx9 LINE L1 -22 7622 6817 1 795 294 106 0 0 chr1 27589864 27589911 -169605521 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 795 29 94 0 0 chr1 27590432 27590517 -169604915 + AT_rich Low_complexity Low_complexity 1 85 0 1 795 4319 226 59 19 chr1 27590517 27590706 -169604726 - Lx3C LINE L1 -2 6974 6758 1 795 339 25 0 0 chr1 27590706 27590746 -169604686 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 795 4319 226 59 19 chr1 27590746 27591130 -169604302 - Lx3C LINE L1 -219 6757 6358 1 795 225 0 0 0 chr1 27591130 27591155 -169604277 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 1 795 360 0 0 0 chr1 27591159 27591199 -169604233 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 795 4319 226 59 19 chr1 27591199 27591703 -169603729 - Lx3C LINE L1 -619 6357 5852 1 795 278 308 0 0 chr1 27593177 27593255 -169602177 + Lx9 LINE L1 7339 7416 -228 1 795 3126 107 20 2 chr1 27593256 27593715 -169601717 + Lx3_Mus LINE L1 6535 7001 -8 1 795 27 0 0 0 chr1 27593715 27593742 -169601690 + AT_rich Low_complexity Low_complexity 1 27 0 1 795 319 342 97 25 chr1 27593861 27594098 -169601334 + Lx8 LINE L1 7208 7461 -12 1 795 1110 219 73 16 chr1 27594400 27594827 -169600605 + Lx5 LINE L1 888 1272 -5814 1 795 408 211 0 0 chr1 27594824 27594900 -169600532 + Lx4A LINE L1 6552 6627 -431 1 795 1124 82 7 0 chr1 27594900 27595046 -169600386 + B1_Mus1 SINE Alu 2 148 0 1 795 2188 204 23 5 chr1 27595084 27595522 -169599910 + Lx4A LINE L1 6612 7057 -1 1 795 22 0 0 0 chr1 27595527 27595549 -169599883 + AT_rich Low_complexity Low_complexity 1 22 0 1 795 897 240 15 2 chr1 27595553 27595828 -169599604 + Lx5 LINE L1 1257 1534 -2380 1 795 9220 115 13 84 chr1 27595936 27597086 -169598346 - L1_Mur1 LINE L1 -45 5841 4687 1 795 369 0 0 0 chr1 27597086 27597127 -169598305 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 795 794 64 9 0 chr1 27597127 27597237 -169598195 - B1_Mm SINE Alu -35 112 2 1 795 9220 115 13 84 chr1 27597237 27597631 -169597801 - L1_Mur1 LINE L1 -1200 4686 4304 1 795 7457 118 3 20 chr1 27597630 27598802 -169596630 + Lx3_Mus LINE L1 5837 6988 -21 1 795 1460 242 41 20 chr1 27598821 27599310 -169596122 + Lx5 LINE L1 1561 2059 -3821 1 795 426 108 0 0 chr1 27599320 27599394 -169596038 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 795 1502 226 49 5 chr1 27599394 27599763 -169595669 + Lx5 LINE L1 3857 4241 -1639 1 795 2711 255 70 42 chr1 27599760 27600851 -169594581 + Lx5 LINE L1 5345 6461 -589 1 795 468 0 0 0 chr1 27600851 27600903 -169594529 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 795 2711 305 78 70 chr1 27600903 27601378 -169594054 + Lx5 LINE L1 6462 6934 -116 1 795 342 91 0 0 chr1 27601378 27601433 -169593999 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 1 795 2711 305 78 70 chr1 27601433 27601514 -169593918 + Lx5 LINE L1 6935 7011 -39 1 795 393 96 48 12 chr1 27601534 27601618 -169593814 + A-rich Low_complexity Low_complexity 3 89 0 1 795 207 203 16 48 chr1 27601752 27601814 -169593618 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 795 24 53 0 0 chr1 27601824 27601862 -169593570 + AT_rich Low_complexity Low_complexity 1 38 0 1 795 37 23 0 0 chr1 27603056 27603100 -169592332 + AT_rich Low_complexity Low_complexity 1 44 0 1 795 1302 279 55 18 chr1 27603331 27603732 -169591700 + Lx6 LINE L1 7044 7459 -1 1 795 1154 125 8 1 chr1 27603747 27603968 -169591464 + L1_Mus4 LINE L1 6202 6398 -238 1 795 318 26 0 0 chr1 27604289 27604328 -169591104 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 795 604 325 79 16 chr1 27604359 27605087 -169590345 + L1M2 LINE L1 5031 5806 -494 1 795 267 324 24 13 chr1 27605562 27605746 -169589686 + L1M2 LINE L1 5350 5536 -755 1 795 248 184 0 0 chr1 27605858 27605907 -169589525 + L1M2 LINE L1 5738 5786 -514 1 795 39 22 0 0 chr1 27605907 27605953 -169589479 + AT_rich Low_complexity Low_complexity 1 46 0 1 795 1864 162 0 55 chr1 27605991 27606337 -169589095 + ORR1A2 LTR MaLR 1 327 0 1 795 955 139 0 0 chr1 27606461 27606598 -169588834 + B1_Mus1 SINE Alu 3 139 -9 1 795 22 0 0 0 chr1 27606656 27606678 -169588754 + AT_rich Low_complexity Low_complexity 1 22 0 1 795 579 315 10 5 chr1 27606854 27607058 -169588374 - Lx7 LINE L1 -860 6836 6632 1 795 1014 321 60 57 chr1 27607176 27607971 -169587461 - Lx7 LINE L1 -1311 6385 5588 1 795 470 355 94 23 chr1 27607982 27608420 -169587012 + Lx7 LINE L1 6846 7314 -382 1 795 304 322 17 42 chr1 27608973 27609093 -169586339 + MTEa LTR MaLR 254 370 -9 1 795 25 65 0 0 chr1 27609296 27609342 -169586090 + AT_rich Low_complexity Low_complexity 1 46 0 1 795 4072 141 83 1 chr1 27609414 27610112 -169585320 + Lx2B LINE L1 6246 7000 0 1 795 3748 43 43 0 chr1 27610117 27610587 -169584845 + L1Md_F3 LINE L1 6094 6583 -1 1 795 22 80 0 0 chr1 27610837 27610887 -169584545 + AT_rich Low_complexity Low_complexity 1 50 0 1 795 25 31 0 0 chr1 27611109 27611141 -169584291 + AT_rich Low_complexity Low_complexity 1 32 0 1 795 209 57 29 0 chr1 27611390 27611425 -169584007 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 795 277 206 55 27 chr1 27611750 27611860 -169583572 + (TATATG)n Simple_repeat Simple_repeat 1 113 0 1 795 3770 126 36 3 chr1 27612463 27613043 -169582389 - MT2B LTR ERVL 0 601 3 1 795 501 274 194 38 chr1 27613058 27613244 -169582188 - B3 SINE B2 -1 215 1 1 795 1043 161 0 30 chr1 27613346 27613545 -169581887 + B2_Mm2 SINE B2 3 195 0 1 795 1022 198 127 46 chr1 27613854 27614161 -169581271 - IAPEY3_LTR LTR ERVK 0 332 1 1 795 324 64 0 0 chr1 27614400 27614447 -169580985 + (TAG)n Simple_repeat Simple_repeat 1 47 0 1 795 189 0 0 0 chr1 27614518 27614539 -169580893 + (T)n Simple_repeat Simple_repeat 1 21 0 1 795 270 0 0 0 chr1 27614843 27614873 -169580559 + (T)n Simple_repeat Simple_repeat 1 30 0 1 795 201 152 0 0 chr1 27615067 27615100 -169580332 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 1 795 3148 50 62 5 chr1 27615107 27615528 -169579904 - L1Md_F3 LINE L1 -3 6581 6137 1 795 260 388 77 35 chr1 27616929 27617268 -169578164 + LTR16A LTR ERVL 76 428 -23 1 795 1614 230 52 22 chr1 27617695 27618099 -169577333 + Lx4B LINE L1 6641 7056 -2 1 795 371 313 93 48 chr1 27619192 27619719 -169575713 + L1_Mur3 LINE L1 4094 4639 -1244 1 795 284 237 13 13 chr1 27619771 27619848 -169575584 + L1M2 LINE L1 4943 5019 -1124 1 795 240 326 41 7 chr1 27619838 27619983 -169575449 - L1M2 LINE L1 -768 5532 5383 1 795 570 160 0 0 chr1 27620913 27621044 -169574388 + GA-rich Low_complexity Low_complexity 2 132 0 1 795 409 221 93 0 chr1 27621270 27621356 -169574076 - Lx7 LINE L1 -463 7233 7140 1 795 697 249 96 19 chr1 27621348 27621618 -169573814 + Lx7 LINE L1 6839 7129 -567 1 795 37 0 0 0 chr1 27621943 27621980 -169573452 + AT_rich Low_complexity Low_complexity 1 37 0 1 795 23 33 0 0 chr1 27622405 27622435 -169572997 + AT_rich Low_complexity Low_complexity 1 30 0 1 795 633 14 0 0 chr1 27622579 27622653 -169572779 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 795 228 222 22 0 chr1 27622729 27622774 -169572658 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 795 238 262 11 101 chr1 27623025 27623114 -169572318 - RMER30 DNA MER1_type -100 102 22 1 795 609 295 127 63 chr1 27623332 27623781 -169571651 + RMER13A LTR ERVK 2 498 -410 1 795 21 0 0 0 chr1 27624288 27624309 -169571123 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 291 272 232 0 chr1 27624532 27624651 -169570781 - PB1D10 SINE Alu 0 149 4 1 795 657 36 0 0 chr1 27624896 27624980 -169570452 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 795 243 0 0 0 chr1 27624987 27625014 -169570418 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 795 247 258 33 13 chr1 27625339 27625492 -169569940 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 795 299 327 18 26 chr1 27625508 27625621 -169569811 + RSINE1 SINE B4 48 159 -6 1 795 21 57 0 0 chr1 27626283 27626318 -169569114 + AT_rich Low_complexity Low_complexity 1 35 0 1 795 5873 96 18 17 chr1 27626556 27627275 -169568157 - MusHAL1 LINE L1 -1526 1186 463 1 795 2669 39 42 0 chr1 27627275 27627607 -169567825 + ORR1A0 LTR MaLR 1 346 0 1 795 5873 96 18 17 chr1 27627607 27627845 -169567587 - MusHAL1 LINE L1 -2250 462 228 1 795 472 194 10 0 chr1 27627997 27628100 -169567332 + Lx2 LINE L1 6892 6995 -2 1 795 1670 43 0 0 chr1 27628316 27628523 -169566909 - L1_Mus1 LINE L1 0 6567 6361 1 795 209 278 22 29 chr1 27628736 27628873 -169566559 + CT-rich Low_complexity Low_complexity 1 136 0 1 795 218 211 19 0 chr1 27628840 27628892 -169566540 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 1 795 405 0 0 0 chr1 27630444 27630489 -169564943 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 795 1437 294 32 29 chr1 27630967 27631665 -169563767 + MYSERV6-int LTR ERVK 8092 8661 -298 2 795 4813 146 12 4 chr1 27631985 27632792 -169562640 + L1_Mus1 LINE L1 4490 5303 -580 2 795 2360 121 6 0 chr1 27632788 27633128 -169562304 - L1Md_F2 LINE L1 -399 6183 5842 2 795 2318 130 11 13 chr1 27633129 27633511 -169561921 + L1Md_F2 LINE L1 6200 6580 -2 2 795 7271 95 1 6 chr1 27633512 27634795 -169560637 + L1_Mus1 LINE L1 5294 6566 -1 2 795 357 213 29 104 chr1 27634991 27635164 -169560268 + RMER17C-int LTR ERVK 2261 2420 -818 2 795 388 297 0 10 chr1 27635181 27635283 -169560149 - LSU-rRNA_Hsa rRNA rRNA -731 4304 4204 2 795 674 219 124 68 chr1 27635362 27635967 -169559465 + RMER17C-int LTR ERVK 2611 3238 0 2 795 1204 284 102 71 chr1 27636079 27636955 -169558477 - L1_Rod LINE L1 -1176 4671 3769 2 795 649 315 5 0 chr1 27637750 27637950 -169557482 + B3 SINE B2 1 201 -15 2 795 25 31 0 0 chr1 27638924 27638956 -169556476 + AT_rich Low_complexity Low_complexity 1 32 0 2 795 2451 259 83 11 chr1 27639687 27640437 -169554995 - Lx2B LINE L1 0 7000 6197 2 795 646 217 11 6 chr1 27641366 27641542 -169553890 + (CATA)n Simple_repeat Simple_repeat 2 178 0 2 795 232 283 0 0 chr1 27641543 27641603 -169553829 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 795 5006 138 8 9 chr1 27641618 27642459 -169552973 - Lx3A LINE L1 -5 6976 6137 2 795 595 72 10 20 chr1 27643065 27643164 -169552268 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 2 795 198 0 0 0 chr1 27643195 27643217 -169552215 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 795 482 46 15 0 chr1 27643228 27643293 -169552139 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 2 795 707 310 0 20 chr1 27643344 27643548 -169551884 + B3 SINE B2 17 216 0 2 795 466 314 8 0 chr1 27643711 27643829 -169551603 + B3A SINE B2 2 120 -78 2 795 25 51 0 0 chr1 27644856 27644895 -169550537 + AT_rich Low_complexity Low_complexity 1 39 0 2 795 255 125 0 0 chr1 27645576 27645616 -169549816 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 795 351 206 37 0 chr1 27645738 27645845 -169549587 + Lx6 LINE L1 7341 7451 -9 2 795 270 56 0 0 chr1 27646500 27646536 -169548896 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 795 437 312 29 7 chr1 27646536 27646665 -169548767 - B3A SINE B2 -44 154 22 2 795 3167 166 64 11 chr1 27646818 27647383 -169548049 - MT2B LTR ERVL -6 595 1 2 795 21 36 0 0 chr1 27647474 27647502 -169547930 + AT_rich Low_complexity Low_complexity 1 28 0 2 795 929 303 50 75 chr1 27648791 27648994 -169546438 + Lx8 LINE L1 5363 5562 -318 2 795 302 0 26 0 chr1 27648994 27649032 -169546400 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 795 929 303 50 75 chr1 27649032 27649221 -169546211 + Lx8 LINE L1 5563 5740 -140 2 795 2149 122 149 23 chr1 27649221 27649649 -169545783 - RLTR45 LTR ERVK 0 482 1 2 795 929 323 55 78 chr1 27649649 27650002 -169545430 + Lx8 LINE L1 5741 6097 -1376 2 795 12790 152 25 21 chr1 27650097 27653059 -169542373 + L1Md_F LINE L1 387 3360 -2523 2 795 4252 109 1 11 chr1 27653056 27653704 -169541728 + L1Md_F LINE L1 4685 5326 -557 2 795 830 10 0 10 chr1 27653704 27653804 -169541628 + (GAA)n Simple_repeat Simple_repeat 1 99 0 2 795 1548 173 144 69 chr1 27653804 27654310 -169541122 - RMER16-int LTR ERVK -4498 908 458 2 795 314 335 60 50 chr1 27654423 27654624 -169540808 - L1M2 LINE L1 -1254 4889 4687 2 795 273 272 62 39 chr1 27654687 27654817 -169540615 + L1M2 LINE L1 4485 4617 -1526 2 795 654 198 7 31 chr1 27654831 27655121 -169540311 + CT-rich Low_complexity Low_complexity 1 282 0 2 795 195 42 0 0 chr1 27655225 27655249 -169540183 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 795 201 39 0 0 chr1 27655252 27655278 -169540154 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 795 1065 290 98 17 chr1 27655305 27655785 -169539647 - Lx9 LINE L1 -228 7416 6898 2 795 2415 229 62 11 chr1 27655799 27656065 -169539367 - RMER6D LTR ERVK 0 720 450 2 99 1791 166 21 36 chr1 27656065 27656397 -169539035 - ORR1A2 LTR MaLR 0 327 1 2 796 2415 229 62 11 chr1 27656397 27656691 -169538741 - RMER6D LTR ERVK -271 449 131 2 796 1061 102 7 0 chr1 27656707 27656854 -169538578 - B1_Mus1 SINE Alu 0 148 1 2 796 629 335 66 43 chr1 27656895 27657332 -169538100 - Lx8 LINE L1 -291 7182 6736 2 796 1052 182 137 29 chr1 27657465 27657590 -169537842 - Lx LINE L1 0 6654 6519 2 796 264 77 0 0 chr1 27657590 27657629 -169537803 + (CCCA)n Simple_repeat Simple_repeat 3 41 0 2 796 1052 182 137 29 chr1 27657629 27657780 -169537652 - Lx LINE L1 -136 6518 6348 2 796 379 342 45 13 chr1 27657765 27657919 -169537513 - Lx8 LINE L1 -781 6692 6534 2 796 3115 93 106 2 chr1 27657941 27658405 -169537027 - L1_Mus2 LINE L1 -1 6565 6054 2 796 204 67 0 0 chr1 27658611 27658641 -169536791 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 796 852 72 0 0 chr1 27659504 27659629 -169535803 + (GA)n Simple_repeat Simple_repeat 2 126 0 2 796 297 0 0 0 chr1 27660684 27660717 -169534715 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 796 22 35 0 0 chr1 27661079 27661108 -169534324 + AT_rich Low_complexity Low_complexity 1 29 0 2 796 266 0 0 29 chr1 27661777 27661812 -169533620 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 796 34 55 0 0 chr1 27661902 27661957 -169533475 + AT_rich Low_complexity Low_complexity 1 55 0 2 796 239 280 40 0 chr1 27662960 27663035 -169532397 - MER90 LTR ERV1 -165 410 333 2 796 1511 212 35 85 chr1 27663303 27663701 -169531731 + RMER6B LTR ERVK 20 397 -64 2 796 393 22 0 0 chr1 27663733 27663779 -169531653 + (CAATA)n Simple_repeat Simple_repeat 3 48 0 2 796 348 111 0 0 chr1 27663953 27664016 -169531416 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 2 796 297 0 0 0 chr1 27664018 27664051 -169531381 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 796 198 0 0 0 chr1 27664302 27664324 -169531108 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 796 27 0 0 0 chr1 27664627 27664654 -169530778 + AT_rich Low_complexity Low_complexity 1 27 0 2 796 31 44 0 0 chr1 27664689 27664734 -169530698 + AT_rich Low_complexity Low_complexity 1 45 0 2 796 346 95 31 16 chr1 27665924 27665988 -169529444 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 2 796 4765 87 8 0 chr1 27666508 27667164 -169528268 + L1_Mus1 LINE L1 5906 6566 -1 2 796 412 324 65 16 chr1 27667567 27667752 -169527680 + MT2A LTR ERVL 269 462 -71 2 796 3080 158 62 11 chr1 27667756 27668977 -169526455 + Lx6 LINE L1 415 1682 -4204 2 796 373 332 66 12 chr1 27669000 27669244 -169526188 + Lx6 LINE L1 6035 6291 -1172 2 796 252 333 61 0 chr1 27669635 27669800 -169525632 - L1MA8 LINE L1 -353 5938 5764 2 796 733 100 15 0 chr1 27669936 27670066 -169525366 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 2 796 522 307 65 15 chr1 27670397 27670721 -169524711 - L1MA8 LINE L1 -917 5226 4887 2 796 24 32 0 0 chr1 27670721 27670752 -169524680 + AT_rich Low_complexity Low_complexity 1 31 0 2 796 2286 36 0 0 chr1 27670765 27671039 -169524393 - L1Md_T LINE L1 -1 6581 6308 2 796 1597 32 0 0 chr1 27671040 27671229 -169524203 + L1Md_T LINE L1 6131 6319 -263 2 796 366 23 0 0 chr1 27671686 27671729 -169523703 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 796 414 360 22 0 chr1 27671729 27672004 -169523428 - L1M2 LINE L1 -538 5762 5482 2 796 228 244 0 0 chr1 27672102 27672143 -169523289 - B1_Mus1 SINE Alu -104 44 4 2 796 356 298 87 29 chr1 27672189 27672488 -169522944 - L1M2 LINE L1 -896 5247 4906 2 796 536 276 8 0 chr1 27674735 27674862 -169520570 + MTE2b LTR MaLR 252 379 0 2 796 8488 87 20 0 chr1 27674955 27675465 -169519967 + Lx3A LINE L1 5397 5911 -1070 2 796 243 0 0 0 chr1 27675465 27675492 -169519940 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 796 8488 118 37 6 chr1 27675492 27676518 -169518914 + Lx3A LINE L1 5912 6978 -3 2 796 243 357 18 0 chr1 27676739 27676910 -169518522 + L1MA4 LINE L1 4573 4746 -1397 2 796 579 225 7 0 chr1 27676915 27677053 -169518379 + URR1A DNA MER1_type 59 197 -29 2 796 267 140 0 0 chr1 27677080 27677106 -169518326 + (A)n Simple_repeat Simple_repeat 1 26 0 2 796 883 150 0 52 chr1 27677106 27677261 -169518171 + B1_Mus2 SINE Alu 1 147 0 2 796 267 140 0 0 chr1 27677261 27677291 -169518141 + (A)n Simple_repeat Simple_repeat 1 30 0 2 796 1606 224 100 102 chr1 27677333 27677953 -169517479 - RMER6C LTR ERVK -71 619 1 2 796 413 306 111 18 chr1 27678133 27678332 -169517100 + L1MA4 LINE L1 5382 5589 -708 2 796 405 0 0 0 chr1 27678332 27678377 -169517055 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 796 413 306 111 18 chr1 27678377 27678403 -169517029 + L1MA4 LINE L1 5590 5628 -669 2 796 320 178 68 14 chr1 27678474 27678548 -169516884 + L1MA4 LINE L1 5840 5917 -383 2 796 401 50 17 0 chr1 27678831 27678891 -169516541 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 796 321 100 0 0 chr1 27678891 27678940 -169516492 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2 796 320 276 32 57 chr1 27679082 27679205 -169516227 + MTD LTR MaLR 1 120 -301 2 796 243 203 81 0 chr1 27679231 27679305 -169516127 - Lx9 LINE L1 -1 7643 7564 2 796 1670 244 55 2 chr1 27679490 27679925 -169515507 - Lx9 LINE L1 -327 7317 6860 2 796 497 295 78 6 chr1 27679925 27680092 -169515340 + MTD LTR MaLR 111 289 -130 2 796 1396 321 31 9 chr1 27680095 27680545 -169514887 + Lx6 LINE L1 6971 7430 -30 2 796 296 213 15 5 chr1 27680560 27680636 -169514796 + MTD LTR MaLR 340 414 -7 2 796 530 29 0 14 chr1 27680847 27680916 -169514516 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 2 796 461 292 102 36 chr1 27680947 27681641 -169513791 - L1M4 LINE L1 -652 5532 4790 2 796 234 160 0 0 chr1 27682675 27682725 -169512707 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 796 183 414 96 15 chr1 27682746 27682881 -169512551 - L3 LINE CR1 -3 4486 4341 2 796 318 286 79 30 chr1 27683926 27684027 -169511405 + RSINE1 SINE B4 3 108 -57 2 796 613 42 0 31 chr1 27684616 27684714 -169510718 + L1Md_F3 LINE L1 6457 6551 -33 2 796 372 59 0 0 chr1 27684714 27684765 -169510667 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 796 24 0 0 0 chr1 27685242 27685266 -169510166 + AT_rich Low_complexity Low_complexity 1 24 0 2 796 786 104 22 7 chr1 27685267 27685402 -169510030 - Lx LINE L1 -1 6653 6517 2 796 327 49 0 0 chr1 27686651 27686692 -169508740 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 796 387 0 0 0 chr1 27686692 27686734 -169508698 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 796 695 149 0 6 chr1 27686734 27686903 -169508529 + GA-rich Low_complexity Low_complexity 1 168 0 2 796 204 40 0 0 chr1 27686920 27686945 -169508487 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 796 433 316 7 29 chr1 27687458 27687598 -169507834 + B3 SINE B2 4 140 -76 2 796 347 79 0 31 chr1 27687921 27687986 -169507446 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 2 796 216 0 0 0 chr1 27687997 27688021 -169507411 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 796 488 214 26 116 chr1 27688021 27688211 -169507221 - B2_Mm2 SINE B2 -18 177 5 2 796 1767 193 8 6 chr1 27688224 27688578 -169506854 - L1_Mm LINE L1 -1025 4858 4504 3 796 1267 96 22 0 chr1 27688582 27688760 -169506672 + Lx LINE L1 5601 5782 -872 3 796 446 167 87 0 chr1 27688802 27688928 -169506504 - Lx9 LINE L1 -1 7643 7507 3 796 381 300 44 51 chr1 27688961 27689119 -169506313 + Lx9 LINE L1 7254 7410 -234 3 796 390 354 16 19 chr1 27689192 27689450 -169505982 - Lx7 LINE L1 -1116 6528 6301 3 796 913 313 53 25 chr1 27689584 27690200 -169505232 - Lx7 LINE L1 -1616 6080 5401 3 796 426 196 43 11 chr1 27690246 27690339 -169505093 - B1F2 SINE Alu -8 141 46 3 796 1020 99 0 7 chr1 27690828 27690970 -169504462 - B1_Mm SINE Alu -6 141 1 3 796 342 0 0 0 chr1 27691766 27691804 -169503628 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 796 4793 218 56 12 chr1 27691966 27693513 -169501919 + Lx7 LINE L1 4641 6283 -1413 3 796 288 0 0 0 chr1 27693561 27693593 -169501839 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 796 718 199 120 62 chr1 27694116 27694325 -169501107 + URR1A DNA MER1_type 6 226 0 3 796 360 43 0 0 chr1 27694399 27694445 -169500987 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 796 392 77 15 0 chr1 27694445 27694509 -169500923 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 796 2889 127 0 0 chr1 27694646 27695080 -169500352 + Lx LINE L1 6209 6642 -12 3 796 29 28 0 0 chr1 27695435 27695471 -169499961 + AT_rich Low_complexity Low_complexity 1 36 0 3 796 180 0 0 0 chr1 27695708 27695728 -169499704 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 796 333 68 0 0 chr1 27695931 27695975 -169499457 + (T)n Simple_repeat Simple_repeat 1 44 0 3 796 22 0 0 0 chr1 27696459 27696481 -169498951 + AT_rich Low_complexity Low_complexity 1 22 0 3 796 204 125 0 0 chr1 27697055 27697087 -169498345 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 3 796 477 124 0 0 chr1 27697086 27697183 -169498249 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 796 207 114 0 0 chr1 27697356 27697391 -169498041 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 796 215 368 0 0 chr1 27697604 27697672 -169497760 - B4 SINE B4 -224 68 1 3 796 2563 153 8 74 chr1 27697844 27698374 -169497058 + Lx2A1 LINE L1 6508 7002 -6 3 796 198 71 0 0 chr1 27699411 27699439 -169495993 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 796 25 0 0 0 chr1 27699859 27699884 -169495548 + AT_rich Low_complexity Low_complexity 1 25 0 3 796 351 0 0 0 chr1 27700138 27700177 -169495255 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 3 796 1098 71 0 0 chr1 27700182 27700322 -169495110 - B1_Mus1 SINE Alu -8 140 1 3 796 289 104 45 0 chr1 27700457 27700524 -169494908 + (CAAAAA)n Simple_repeat Simple_repeat 3 72 0 3 796 327 271 128 17 chr1 27701249 27701429 -169494003 - L1MA4 LINE L1 -392 5908 5709 3 796 846 20 0 0 chr1 27701434 27701534 -169493898 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 3 796 252 152 45 0 chr1 27701640 27701706 -169493726 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 796 830 235 152 9 chr1 27702642 27702654 -169492778 + Lx9 LINE L1 7246 7255 -389 3 796 405 0 0 0 chr1 27702654 27702699 -169492733 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 796 830 235 152 9 chr1 27702699 27703034 -169492398 + Lx9 LINE L1 7256 7643 -1 3 796 291 153 40 20 chr1 27703109 27703209 -169492223 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 796 317 333 11 92 chr1 27703256 27703441 -169491991 - Lx7 LINE L1 -409 7287 7118 3 796 1765 252 145 14 chr1 27703641 27703932 -169491500 - MYSERV-int LTR ERVK -486 6064 5727 3 796 584 14 0 14 chr1 27703932 27704006 -169491426 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 3 796 1765 252 145 14 chr1 27704006 27704377 -169491055 - MYSERV-int LTR ERVK -824 5726 5316 3 796 400 294 52 63 chr1 27704380 27704554 -169490878 - RMER4A LTR ERVK -28 438 267 3 796 838 289 33 67 chr1 27704558 27705118 -169490314 - MYSERV-int LTR ERVK -1583 743 339 3 796 204 118 29 0 chr1 27705136 27705170 -169490262 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 796 1125 237 64 61 chr1 27705180 27705557 -169489875 - MYSERV6-int LTR ERVK -7317 1642 1265 3 796 499 154 0 0 chr1 27705584 27705675 -169489757 - MusHAL1 LINE L1 -1537 1175 1085 3 796 972 180 74 47 chr1 27705688 27705985 -169489447 - MYSERV6-int LTR ERVK -888 8071 7767 3 796 358 305 52 52 chr1 27705985 27706158 -169489274 - RMER4A LTR ERVK -27 439 267 3 796 841 290 30 66 chr1 27706162 27706723 -169488709 - MYSERV16_I-int LTR ERVK -1583 743 339 3 796 1025 247 64 72 chr1 27706777 27707152 -169488280 - MYSERV6-int LTR ERVK -7316 1643 1272 3 796 243 88 0 0 chr1 27707152 27707186 -169488246 + (T)n Simple_repeat Simple_repeat 1 34 0 3 796 7191 117 5 15 chr1 27707197 27707284 -169488148 - L1VL2 LINE L1 -1537 2078 2002 3 796 3589 153 14 60 chr1 27707284 27708071 -169487361 - RMER17A LTR ERVK 0 751 1 3 796 7191 133 21 40 chr1 27708071 27710043 -169485389 - L1VL2 LINE L1 -1614 2001 62 3 796 1865 205 20 45 chr1 27710046 27710537 -169484895 - L1_Mur2 LINE L1 -54 5823 5345 3 796 268 223 52 110 chr1 27710887 27711023 -169484409 - MYSERV6-int LTR ERVK -6404 146 19 3 796 22 35 0 0 chr1 27711096 27711125 -169484307 + AT_rich Low_complexity Low_complexity 1 29 0 3 796 28 29 0 0 chr1 27712075 27712110 -169483322 + AT_rich Low_complexity Low_complexity 1 35 0 3 796 183 139 0 0 chr1 27712247 27712283 -169483149 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 796 1156 61 0 0 chr1 27712283 27712431 -169483001 - B1_Mus1 SINE Alu 0 148 1 3 796 551 306 76 18 chr1 27712596 27712819 -169482613 - Lx8 LINE L1 -155 7318 7083 3 796 314 322 137 47 chr1 27714071 27714371 -169481061 - MLT1J-int LTR MaLR -463 924 598 3 796 24 0 0 0 chr1 27714646 27714670 -169480762 + AT_rich Low_complexity Low_complexity 1 24 0 3 796 259 294 32 11 chr1 27715052 27715145 -169480287 - L1MA9 LINE L1 -352 5960 5866 3 796 274 301 29 10 chr1 27715586 27715690 -169479742 - MIRc SINE MIR -62 206 101 3 796 32 81 0 0 chr1 27715905 27715979 -169479453 + AT_rich Low_complexity Low_complexity 1 74 0 3 796 261 98 0 0 chr1 27716055 27716096 -169479336 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 796 305 150 36 48 chr1 27716124 27716208 -169479224 + Lx7 LINE L1 7614 7696 0 3 796 887 260 139 21 chr1 27716345 27716632 -169478800 - RMER6C LTR ERVK -369 321 1 3 796 439 323 75 0 chr1 27716637 27716798 -169478634 + B3 SINE B2 24 196 -20 3 796 1166 213 103 0 chr1 27716866 27717148 -169478284 + RMER6C LTR ERVK 380 690 0 3 796 21 36 0 0 chr1 27717359 27717387 -169478045 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 4366 133 3 3 chr1 27718499 27719468 -169475964 - L1_Mus4 LINE L1 -422 6214 5244 3 796 2534 132 43 9 chr1 27719468 27719888 -169475544 + L1_Mus4 LINE L1 6201 6634 -2 3 796 28 71 0 0 chr1 27720029 27720085 -169475347 + AT_rich Low_complexity Low_complexity 1 56 0 3 796 5167 153 29 8 chr1 27720580 27721488 -169473944 + Lx3A LINE L1 6040 6966 -15 3 796 216 0 0 0 chr1 27721488 27721512 -169473920 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 796 1303 47 65 0 chr1 27721524 27721693 -169473739 + L1Md_F2 LINE L1 6306 6485 -97 3 796 1907 122 29 0 chr1 27722722 27723001 -169472431 - ORR1A2 LTR MaLR 0 327 41 3 796 2324 131 23 23 chr1 27723012 27723403 -169472029 - ORR1A2-int LTR MaLR -104 1859 1469 3 796 816 311 102 42 chr1 27723407 27723994 -169471438 - Lx8 LINE L1 -543 6930 6328 3 796 233 57 29 0 chr1 27724559 27724594 -169470838 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 796 1688 129 16 55 chr1 27725769 27726044 -169469388 + L1_Mur1 LINE L1 4725 4997 -889 3 796 3514 89 4 43 chr1 27726044 27726561 -169468871 + L1_Mus2 LINE L1 6070 6566 0 3 796 1688 129 16 55 chr1 27726561 27726596 -169468836 + L1_Mur1 LINE L1 4998 5023 -863 3 796 39 74 0 0 chr1 27726622 27726703 -169468729 + AT_rich Low_complexity Low_complexity 1 81 0 3 796 375 299 87 0 chr1 27726741 27726868 -169468564 + ID_B1 SINE B4 82 219 -5 3 796 1682 59 14 0 chr1 27727015 27727236 -169468196 - L1Md_F2 LINE L1 0 6582 6359 3 796 450 0 0 0 chr1 27727242 27727292 -169468140 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 796 955 71 0 8 chr1 27727319 27727447 -169467985 - B1_Mm SINE Alu 0 147 21 3 796 381 254 47 71 chr1 27727347 27727474 -169467958 - MT2B LTR ERVL -325 276 153 3 796 485 318 129 39 chr1 27727474 27727808 -169467624 + Lx7 LINE L1 6832 7195 -501 3 796 257 314 0 0 chr1 27727859 27727929 -169467503 + GA-rich Low_complexity Low_complexity 3 72 0 3 796 212 149 0 21 chr1 27728046 27728094 -169467338 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 3 796 698 279 91 78 chr1 27728360 27728773 -169466659 + MTE2a LTR MaLR 1 405 -14 3 796 22 0 0 0 chr1 27730050 27730072 -169465360 + AT_rich Low_complexity Low_complexity 1 22 0 3 796 1023 258 101 26 chr1 27730444 27730790 -169464642 - ORR1D1 LTR MaLR 0 374 3 3 796 938 73 8 0 chr1 27731592 27731716 -169463716 + B1_Mm SINE Alu 22 146 -1 3 796 252 0 0 0 chr1 27731725 27731753 -169463679 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 796 351 0 0 0 chr1 27732938 27732977 -169462455 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 796 21 36 0 0 chr1 27733327 27733355 -169462077 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 214 267 26 13 chr1 27733382 27733400 -169462032 + (TA)n Simple_repeat Simple_repeat 1 19 0 3 796 2555 86 162 12 chr1 27733400 27733813 -169461619 + IAPLTR2_Mm LTR ERVK 1 475 0 3 796 214 267 26 13 chr1 27733813 27733870 -169461562 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 796 1148 196 88 44 chr1 27733942 27734184 -169461248 - RMER6C LTR ERVK -1 689 324 3 796 2600 117 39 2 chr1 27734184 27734595 -169460837 - Lx LINE L1 -7 6647 6222 3 796 1148 194 197 0 chr1 27734595 27734862 -169460570 - RMER6C LTR ERVK -367 323 2 3 796 21 36 0 0 chr1 27735297 27735325 -169460107 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 24 0 0 0 chr1 27735401 27735425 -169460007 + AT_rich Low_complexity Low_complexity 1 24 0 3 796 33 66 0 0 chr1 27735454 27735515 -169459917 + AT_rich Low_complexity Low_complexity 1 61 0 3 796 3152 184 59 28 chr1 27736103 27736780 -169458652 - RMER13B LTR ERVK 0 908 211 3 796 807 304 55 75 chr1 27736902 27737828 -169457604 + L1_Mur3 LINE L1 353 1197 -6531 4 796 1887 240 9 88 chr1 27737828 27738399 -169457033 + RLTR24 LTR ERV1 1 526 -3 4 796 1126 210 20 24 chr1 27738399 27738716 -169456716 + L1_Mur3 LINE L1 1198 1518 -4362 4 796 1178 288 27 12 chr1 27738760 27739097 -169456335 + Lx6 LINE L1 7109 7450 -10 4 796 22 0 0 0 chr1 27739576 27739598 -169455834 + AT_rich Low_complexity Low_complexity 1 22 0 4 796 537 208 114 33 chr1 27742057 27742241 -169453191 - L1_Mur3 LINE L1 -284 5596 5398 4 796 971 359 90 7 chr1 27742328 27742939 -169452493 + Lx8 LINE L1 6564 7225 -248 4 796 752 67 25 8 chr1 27743019 27743140 -169452292 + (TA)n Simple_repeat Simple_repeat 1 123 0 4 796 291 28 0 0 chr1 27743151 27743187 -169452245 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 4 796 23 0 0 0 chr1 27744085 27744108 -169451324 + AT_rich Low_complexity Low_complexity 1 23 0 4 796 3186 51 5 0 chr1 27744271 27744665 -169450767 - MTA_Mm LTR MaLR 0 396 1 4 796 2068 211 35 5 chr1 27745487 27745892 -169449540 + MTC LTR MaLR 5 421 0 4 796 4159 199 39 56 chr1 27745892 27746853 -169448579 + MTC-int LTR MaLR 7 950 -308 4 796 390 101 0 0 chr1 27746853 27746922 -169448510 + (T)n Simple_repeat Simple_repeat 1 69 0 4 796 1103 54 0 45 chr1 27746922 27747076 -169448356 - B1_Mm SINE Alu 0 147 1 4 796 573 192 16 0 chr1 27747118 27747243 -169448189 - Lx2 LINE L1 -1 6996 6870 4 796 2624 210 88 48 chr1 27747250 27747677 -169447755 - RMER17D2 LTR ERVK -13 796 351 4 796 1027 80 11 28 chr1 27747677 27747857 -169447575 + (GA)n Simple_repeat Simple_repeat 1 177 0 4 796 2624 210 88 48 chr1 27747857 27748195 -169447237 - RMER17D2 LTR ERVK -459 350 1 4 796 1213 165 21 38 chr1 27748199 27748438 -169446994 - Lx2 LINE L1 -156 6841 6607 4 796 1041 204 63 15 chr1 27748977 27749246 -169446186 + Lx5 LINE L1 4982 5263 -614 4 796 6865 116 20 10 chr1 27749254 27750293 -169445139 + Lx LINE L1 5604 6653 -1 4 796 3152 180 5 28 chr1 27750293 27751094 -169444338 + Lx5 LINE L1 5282 6068 -982 4 796 435 38 0 0 chr1 27751473 27751526 -169443906 + (CATA)n Simple_repeat Simple_repeat 4 56 0 4 796 415 352 102 38 chr1 27751655 27751822 -169443610 + MTE2b LTR MaLR 129 310 -69 4 796 789 66 8 16 chr1 27751822 27751945 -169443487 + (GAAAA)n Simple_repeat Simple_repeat 4 125 0 4 796 415 352 102 38 chr1 27751945 27752013 -169443419 + MTE2b LTR MaLR 311 378 -1 4 796 206 118 0 0 chr1 27752589 27752623 -169442809 + (A)n Simple_repeat Simple_repeat 1 34 0 4 796 1132 21 14 0 chr1 27755018 27755161 -169440271 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 4 796 552 30 0 0 chr1 27755163 27755229 -169440203 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 4 796 1017 273 131 11 chr1 27755775 27756142 -169439290 - MTD LTR MaLR -7 412 2 4 796 369 0 0 0 chr1 27756964 27757005 -169438427 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 796 234 297 108 15 chr1 27758039 27758169 -169437263 + MTEa LTR MaLR 236 377 -2 4 796 29 0 0 0 chr1 27758435 27758464 -169436968 + AT_rich Low_complexity Low_complexity 1 29 0 4 796 21 57 0 0 chr1 27759272 27759307 -169436125 + AT_rich Low_complexity Low_complexity 1 35 0 4 796 573 154 0 0 chr1 27759636 27759779 -169435653 + CT-rich Low_complexity Low_complexity 2 144 0 4 796 348 269 42 0 chr1 27759779 27759946 -169435486 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 4 796 4086 109 34 0 chr1 27760545 27761141 -169434291 - L1_Mus3 LINE L1 -7 6631 6016 4 796 1221 134 0 20 chr1 27761143 27761341 -169434091 + L1_Mm LINE L1 5519 5712 -171 4 796 4607 137 20 3 chr1 27761788 27762526 -169432906 - Lx LINE L1 -6 6648 5898 4 796 242 95 24 0 chr1 27762535 27762577 -169432855 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 796 525 290 55 0 chr1 27762578 27762723 -169432709 + RLTR33 LTR ERVK 441 593 -85 4 796 243 383 84 7 chr1 27763099 27763254 -169432178 + B3A SINE B2 2 168 -30 4 796 46 45 0 0 chr1 27763300 27763367 -169432065 + AT_rich Low_complexity Low_complexity 1 67 0 4 796 240 86 0 0 chr1 27763755 27763790 -169431642 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 796 184 250 94 0 chr1 27763936 27764000 -169431432 - L2 LINE L2 -1283 2136 2067 4 796 288 152 0 71 chr1 27765492 27765577 -169429855 - MT2A LTR ERVL 0 533 455 4 796 353 268 24 0 chr1 27765649 27765731 -169429701 - MT2A LTR ERVL -446 87 4 4 796 3655 124 10 7 chr1 27766225 27766802 -169428630 - L1_Mus3 LINE L1 -1 6637 6059 4 796 14908 133 14 7 chr1 27766860 27769416 -169426016 - L1_Mm LINE L1 -1505 4378 1806 4 796 873 48 0 0 chr1 27769412 27769516 -169425916 - L1Md_A LINE L1 -197 6385 6282 4 796 4871 133 86 66 chr1 27769603 27770552 -169424880 - L1_Mus2 LINE L1 -1 6565 5598 4 796 252 0 0 0 chr1 27771029 27771057 -169424375 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 796 695 175 7 0 chr1 27771066 27771220 -169424212 + (TA)n Simple_repeat Simple_repeat 1 155 0 4 796 30 89 0 0 chr1 27771275 27771354 -169424078 + AT_rich Low_complexity Low_complexity 1 79 0 4 796 4957 105 31 42 chr1 27771905 27772730 -169422702 + RLTR13B2 LTR ERVK 7 822 0 4 796 2259 127 71 3 chr1 27773600 27773964 -169421468 - Lx LINE L1 -327 6327 5939 4 796 1223 192 42 4 chr1 27773964 27774205 -169421227 + Lx LINE L1 6398 6647 -7 4 796 2052 99 12 38 chr1 27774385 27774731 -169420701 - L1_Mur1 LINE L1 -478 5408 5072 4 796 852 122 14 0 chr1 27774731 27774879 -169420553 + Lx3_Mus LINE L1 6860 7009 0 4 796 30 0 0 0 chr1 27774879 27774909 -169420523 + AT_rich Low_complexity Low_complexity 1 30 0 4 796 496 275 92 83 chr1 27775407 27775664 -169419768 + RMER13A LTR ERVK 14 271 -589 4 796 414 39 0 0 chr1 27775664 27775716 -169419716 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 796 496 275 92 83 chr1 27775716 27775906 -169419526 + RMER13A LTR ERVK 272 465 -395 4 796 3899 146 137 18 chr1 27776472 27776875 -169418557 - RMER17D2 LTR ERVK 0 809 319 4 796 777 110 0 0 chr1 27776875 27776993 -169418439 + (GAGAA)n Simple_repeat Simple_repeat 1 118 0 4 796 3899 146 137 18 chr1 27776993 27777312 -169418120 - RMER17D2 LTR ERVK -491 318 1 4 796 4299 114 7 101 chr1 27777499 27778309 -169417123 + RMER17A LTR ERVK 1 734 -17 4 796 838 147 164 12 chr1 27778830 27778995 -169416437 - B2_Mm2 SINE B2 -4 191 2 4 796 22 0 0 0 chr1 27779986 27780008 -169415424 + AT_rich Low_complexity Low_complexity 1 22 0 4 796 437 0 0 19 chr1 27780272 27780326 -169415106 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 796 37 62 0 0 chr1 27780496 27780561 -169414871 + AT_rich Low_complexity Low_complexity 1 65 0 4 796 23 0 0 0 chr1 27782267 27782290 -169413142 + AT_rich Low_complexity Low_complexity 1 23 0 4 796 4824 78 1 0 chr1 27782389 27783092 -169412340 - L1Md_F LINE L1 -3193 2690 1987 4 796 1165 136 0 0 chr1 27783086 27783292 -169412140 - L1Md_F LINE L1 -5471 1253 1048 4 796 1302 179 28 0 chr1 27783319 27783570 -169411862 - L1Md_F LINE L1 -5989 627 370 4 796 30 0 0 0 chr1 27783659 27783689 -169411743 + AT_rich Low_complexity Low_complexity 1 30 0 4 796 320 276 58 29 chr1 27783887 27784025 -169411407 - Lx8 LINE L1 -409 7064 6923 4 796 1397 260 57 37 chr1 27784076 27784483 -169410949 - MTC LTR MaLR -6 415 1 4 796 409 257 9 9 chr1 27784787 27784893 -169410539 - Lx8 LINE L1 -1038 6435 6330 4 796 949 195 0 9 chr1 27784936 27785153 -169410279 + L1Md_Gf LINE L1 123 337 -6282 4 796 4291 77 0 2 chr1 27785146 27786309 -169409123 + L1Md_Gf LINE L1 563 1819 -4067 4 796 250 237 198 40 chr1 27786309 27786410 -169409022 + RLTR6_Mm LTR ERV1 1 117 -537 4 796 2037 135 251 26 chr1 27786416 27786879 -169408553 + RLTR6_Mm LTR ERV1 37 603 -51 4 99 57854 39 14 0 chr1 27786880 27794439 -169400993 + RLTR6-int LTR ERV1 1 7778 0 4 797 1951 176 140 80 chr1 27794439 27794990 -169400442 + RLTR6_Mm LTR ERV1 1 584 -70 4 797 29355 35 2 4 chr1 27794990 27798769 -169396663 + L1Md_T LINE L1 1813 5586 -297 4 797 8332 40 1 0 chr1 27798769 27799763 -169395669 + L1Md_T LINE L1 5587 6581 -1 4 797 465 243 8 5 chr1 27799819 27799929 -169395503 + RMER19A LTR ERVK 10 131 -480 4 797 369 108 0 0 chr1 27799929 27799994 -169395438 + L1_Mus2 LINE L1 6502 6566 0 4 797 241 307 101 60 chr1 27799994 27800032 -169395400 + RMER19A LTR ERVK 132 164 -447 4 797 6351 137 14 12 chr1 27800032 27801215 -169394217 + Lx LINE L1 5476 6654 0 4 797 282 115 0 0 chr1 27801342 27801394 -169394038 + (T)n Simple_repeat Simple_repeat 1 52 0 4 797 1064 96 7 0 chr1 27801399 27801545 -169393887 - B1_Mm SINE Alu 0 147 1 4 797 24 32 0 0 chr1 27801681 27801712 -169393720 + AT_rich Low_complexity Low_complexity 1 31 0 4 797 224 250 96 0 chr1 27801829 27801881 -169393551 - PB1 SINE Alu -44 83 27 4 797 1049 76 0 0 chr1 27802639 27802770 -169392662 - B1_Mus2 SINE Alu -15 132 2 4 797 1960 184 74 24 chr1 27803300 27803625 -169391807 - BGLII_A LTR ERVK 0 445 44 4 797 3206 56 2 2 chr1 27803625 27804021 -169391411 + MTA_Mm LTR MaLR 1 396 0 4 797 1960 173 79 19 chr1 27804021 27804151 -169391281 - BGLII_A LTR ERVK -306 139 3 4 797 31026 83 1 11 chr1 27804613 27806122 -169389310 - L1Md_F2 LINE L1 -23 6559 5079 4 797 1722 72 5 0 chr1 27806122 27806345 -169389087 - L1Md_T LINE L1 0 6582 6359 4 797 31026 91 12 7 chr1 27806345 27810999 -169384433 - L1Md_F2 LINE L1 -805 5078 387 4 797 35 101 0 0 chr1 27811063 27811182 -169384250 + AT_rich Low_complexity Low_complexity 1 119 0 4 797 1133 65 0 0 chr1 27811260 27811398 -169384034 + B1_Mus2 SINE Alu 1 138 -9 4 797 378 61 0 0 chr1 27811398 27811447 -169383985 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 797 33770 36 0 0 chr1 27811939 27817164 -169378268 + L1Md_T LINE L1 268 5589 -297 4 797 8997 6 0 0 chr1 27817164 27818160 -169377272 + L1Md_T LINE L1 5590 6585 0 4 797 21 36 0 0 chr1 27818692 27818720 -169376712 + AT_rich Low_complexity Low_complexity 1 28 0 4 797 260 278 33 106 chr1 27819130 27819283 -169376149 - Lx9 LINE L1 -34 7610 7472 4 797 351 0 0 0 chr1 27819283 27819322 -169376110 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 797 260 278 33 106 chr1 27819322 27819442 -169375990 - Lx9 LINE L1 -173 7471 7357 4 797 967 101 17 23 chr1 27819633 27819806 -169375626 + L1_Mus3 LINE L1 6467 6638 0 4 797 207 0 0 0 chr1 27820270 27820293 -169375139 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 797 1035 103 7 0 chr1 27820296 27820442 -169374990 - B1_Mus2 SINE Alu 0 147 1 4 797 1003 78 0 0 chr1 27820939 27821080 -169374352 - L1_Mus1 LINE L1 0 6567 6427 4 797 402 138 34 11 chr1 27821214 27821302 -169374130 + Lx LINE L1 6545 6634 -20 4 797 625 362 25 71 chr1 27821551 27821917 -169373515 + MTE2a LTR MaLR 1 349 -30 4 797 1114 57 6 19 chr1 27822598 27822759 -169372673 - L1_Mur1 LINE L1 -878 5008 4850 4 797 4327 128 27 5 chr1 27822758 27823762 -169371670 + Lx3_Mus LINE L1 5164 6188 -821 4 797 2106 152 71 18 chr1 27823763 27824064 -169371368 + Lx3_Mus LINE L1 6577 6871 -138 4 797 203 0 0 36 chr1 27824064 27824092 -169371340 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 4 797 2106 152 71 18 chr1 27824092 27824157 -169371275 + Lx3_Mus LINE L1 6872 6956 -53 4 797 279 0 0 0 chr1 27824157 27824188 -169371244 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 797 2106 152 71 18 chr1 27824188 27824216 -169371216 + Lx3_Mus LINE L1 6957 6992 -17 4 797 488 259 102 30 chr1 27824472 27824639 -169370793 - ORR1C2 LTR MaLR -32 352 174 5 797 273 89 0 0 chr1 27824650 27824695 -169370737 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 797 447 101 0 0 chr1 27824694 27824773 -169370659 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 797 345 245 10 50 chr1 27824776 27824875 -169370557 - ORR1C2 LTR MaLR -191 187 93 5 797 1246 78 0 11 chr1 27825497 27825679 -169369753 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 797 2941 32 0 11 chr1 27825681 27826031 -169369401 + ORR1A0 LTR MaLR 1 346 0 5 797 487 81 23 0 chr1 27826072 27826158 -169369274 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 797 466 297 58 88 chr1 27826425 27826665 -169368767 + RLTR11A2 LTR ERVK 25 257 -270 5 797 396 0 0 0 chr1 27828470 27828514 -169366918 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 5 797 486 0 0 0 chr1 27828515 27828569 -169366863 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 5 797 570 280 0 0 chr1 27828582 27828714 -169366718 - B1_Mus1 SINE Alu -9 139 8 5 797 238 294 16 114 chr1 27828608 27828731 -169366701 - MT2B LTR ERVL -337 264 154 5 797 455 344 58 40 chr1 27828733 27829489 -169365943 - L1M2 LINE L1 -3063 3080 2311 5 797 1104 161 123 4 chr1 27830631 27830875 -169364557 + Lx2 LINE L1 6722 6994 -3 5 797 245 325 14 0 chr1 27831761 27831860 -169363572 + B1F2 SINE Alu 38 139 -10 5 797 1273 233 52 41 chr1 27832394 27832739 -169362693 - RLTR15 LTR ERVK -10 349 1 5 797 614 288 207 50 chr1 27833622 27833984 -169361448 + MTD LTR MaLR 1 419 0 5 797 351 263 29 69 chr1 27834150 27834252 -169361180 + MTE2a LTR MaLR 72 169 -210 5 797 302 316 24 93 chr1 27834868 27834893 -169360539 - Lx2 LINE L1 0 6582 6561 5 797 5939 138 57 4 chr1 27834893 27835907 -169359525 - Lx3A LINE L1 -2 6979 5912 5 797 1149 146 155 4 chr1 27835907 27836134 -169359298 - Lx2 LINE L1 -13 6984 6733 5 797 1037 98 0 0 chr1 27836525 27836668 -169358764 + B1_Mus1 SINE Alu 6 148 0 5 797 1094 70 0 7 chr1 27837989 27838126 -169357306 + B1_Mus1 SINE Alu 1 137 -11 5 797 252 59 0 0 chr1 27838126 27838160 -169357272 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 797 215 203 15 45 chr1 27838559 27838626 -169356806 + T-rich Low_complexity Low_complexity 3 67 0 5 797 927 176 0 0 chr1 27838626 27838774 -169356658 - B1_Mus1 SINE Alu 0 148 1 5 797 34 72 0 0 chr1 27838785 27838854 -169356578 + AT_rich Low_complexity Low_complexity 1 69 0 5 797 42 48 0 0 chr1 27839468 27839531 -169355901 + AT_rich Low_complexity Low_complexity 1 63 0 5 797 599 338 54 78 chr1 27839644 27839975 -169355457 - ORR1E LTR MaLR -31 328 6 5 797 1493 192 65 80 chr1 27840028 27840379 -169355053 + ORR1B1 LTR MaLR 41 386 -8 5 797 4192 210 89 93 chr1 27840385 27841902 -169353530 + ORR1B1-int LTR MaLR 3 1963 0 5 797 1728 221 20 6 chr1 27841917 27842259 -169353173 + ORR1B1 LTR MaLR 47 393 -1 5 797 429 322 81 48 chr1 27842324 27842630 -169352802 - ORR1E-int LTR MaLR -914 666 356 5 797 342 0 0 0 chr1 27842650 27842688 -169352744 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 797 3253 248 164 6 chr1 27842707 27843827 -169351605 - Lx9 LINE L1 -22 7622 6326 5 797 360 0 0 0 chr1 27844698 27844738 -169350694 + (T)n Simple_repeat Simple_repeat 1 40 0 5 797 320 73 36 0 chr1 27845091 27845146 -169350286 + (CAAAA)n Simple_repeat Simple_repeat 5 61 0 5 797 396 103 0 0 chr1 27845809 27845867 -169349565 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 797 450 0 0 0 chr1 27845868 27845918 -169349514 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 797 21 0 0 0 chr1 27846463 27846484 -169348948 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 1629 276 130 26 chr1 27846605 27847537 -169347895 + L1_Mur3 LINE L1 3640 4668 -1212 5 797 1301 232 126 4 chr1 27847602 27847999 -169347433 - Lx2B LINE L1 -10 6990 6201 5 797 770 295 88 41 chr1 27848051 27848564 -169346868 + L1_Mur3 LINE L1 4719 5255 -625 5 797 782 207 314 0 chr1 27848574 27848845 -169346587 + RMER6C LTR ERVK 3 358 -332 5 797 425 302 61 6 chr1 27848882 27849045 -169346387 + L1_Mur3 LINE L1 5401 5572 -308 5 797 345 316 57 38 chr1 27849925 27850083 -169345349 + RMER5 LTR ERV1 37 197 -337 5 797 854 330 72 19 chr1 27850059 27850433 -169344999 + MTD LTR MaLR 12 405 -14 5 797 532 195 71 199 chr1 27850443 27850654 -169344778 + ORR1C1 LTR MaLR 1 184 -183 5 797 878 113 14 41 chr1 27850982 27851129 -169344303 + B1_Mus1 SINE Alu 5 147 -1 5 797 189 0 0 0 chr1 27851134 27851155 -169344277 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 797 26 0 0 0 chr1 27851158 27851184 -169344248 + AT_rich Low_complexity Low_complexity 1 26 0 5 797 462 108 27 81 chr1 27851299 27851410 -169344022 - Lx LINE L1 0 6654 6550 5 797 1088 257 50 70 chr1 27851469 27851884 -169343548 - Lx2B LINE L1 0 6997 6557 5 797 295 325 64 40 chr1 27851977 27852102 -169343330 - RSINE1 SINE B4 -36 129 2 5 797 1247 299 151 51 chr1 27852111 27853036 -169342396 - Lx9 LINE L1 0 7644 6627 5 797 324 64 0 0 chr1 27853660 27853707 -169341725 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 797 418 203 23 0 chr1 27853711 27853839 -169341593 + Lx9 LINE L1 7514 7644 0 5 797 2690 55 5 117 chr1 27853937 27854348 -169341084 - RLTR10B2 LTR ERVK 0 365 1 5 797 198 0 0 0 chr1 27854377 27854399 -169341033 + (A)n Simple_repeat Simple_repeat 1 22 0 5 797 203 175 0 0 chr1 27854582 27854622 -169340810 + A-rich Low_complexity Low_complexity 1 40 0 5 797 21 0 0 0 chr1 27854834 27854855 -169340577 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 300 293 31 94 chr1 27855324 27855452 -169339980 - MER58B DNA MER1_type -16 325 206 5 797 224 30 30 0 chr1 27856478 27856511 -169338921 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 797 462 272 0 75 chr1 27856527 27856686 -169338746 - B1F SINE Alu -2 147 1 5 797 32 26 0 0 chr1 27857159 27857198 -169338234 + AT_rich Low_complexity Low_complexity 1 39 0 5 797 2995 159 28 18 chr1 27857505 27858049 -169337383 - Lx2 LINE L1 0 6997 6449 5 797 245 65 0 61 chr1 27858535 27858584 -169336848 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 797 746 59 0 19 chr1 27858597 27858701 -169336731 - B1_Mm SINE Alu -1 146 45 5 797 7083 88 7 8 chr1 27858701 27859926 -169335506 - L1_Mus2 LINE L1 -9 6557 5332 5 797 2677 72 0 0 chr1 27860626 27860958 -169334474 - IAPEY3_LTR LTR ERVK 0 332 1 5 797 2180 152 35 0 chr1 27862905 27863280 -169332152 - L1_Mm LINE L1 -170 5713 5326 5 797 3704 112 7 5 chr1 27863280 27863848 -169331584 + L1_Mus3 LINE L1 6069 6637 -1 5 797 322 263 100 5 chr1 27864242 27864356 -169331076 + MTE2a LTR MaLR 258 377 -2 5 797 1039 300 48 32 chr1 27864426 27864860 -169330572 - Lx8 LINE L1 -410 7063 6623 5 797 897 70 0 0 chr1 27864847 27864962 -169330470 - L1_Mus2 LINE L1 -260 6306 6192 5 797 1389 80 9 82 chr1 27864962 27865195 -169330237 + L1_Mus2 LINE L1 6350 6565 -1 5 797 531 82 0 0 chr1 27865216 27865289 -169330143 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 5 797 761 311 29 4 chr1 27865291 27865533 -169329899 - Lx8 LINE L1 -830 6643 6396 5 797 870 141 0 0 chr1 27865589 27865759 -169329673 + (TA)n Simple_repeat Simple_repeat 2 171 0 5 797 23 68 0 0 chr1 27865765 27865809 -169329623 + AT_rich Low_complexity Low_complexity 1 44 0 5 797 655 348 146 11 chr1 27865855 27866218 -169329214 + MTD LTR MaLR 1 412 -7 5 797 37 52 0 0 chr1 27866717 27866775 -169328657 + AT_rich Low_complexity Low_complexity 1 58 0 5 797 23 0 0 0 chr1 27866800 27866823 -169328609 + AT_rich Low_complexity Low_complexity 1 23 0 5 797 7283 91 5 1 chr1 27866874 27868189 -169327243 + L1_Mus1 LINE L1 5309 6567 0 5 797 23 54 0 0 chr1 27868359 27868396 -169327036 + AT_rich Low_complexity Low_complexity 1 37 0 5 797 1406 316 32 22 chr1 27869663 27870167 -169325265 + Lx6 LINE L1 6947 7455 -5 5 797 387 105 0 0 chr1 27870828 27870885 -169324547 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 5 797 23 0 0 0 chr1 27871836 27871859 -169323573 + AT_rich Low_complexity Low_complexity 1 23 0 5 797 6303 92 10 79 chr1 27873898 27874433 -169320999 - L1_Mur1 LINE L1 -1008 4878 4423 5 797 3308 33 5 0 chr1 27874433 27874827 -169320605 - MTA_Mm LTR MaLR 0 396 1 5 797 6303 92 10 79 chr1 27874827 27875385 -169320047 - L1_Mur1 LINE L1 -1464 4422 3860 5 797 322 349 49 95 chr1 27875412 27875675 -169319757 + MER54B LTR ERVL 56 306 -487 5 797 29 28 0 0 chr1 27875761 27875797 -169319635 + AT_rich Low_complexity Low_complexity 1 36 0 5 797 1513 257 39 10 chr1 27876074 27876483 -169318949 + MTC LTR MaLR 1 421 0 5 797 27 49 0 32 chr1 27876524 27876571 -169318861 + AT_rich Low_complexity Low_complexity 1 47 0 5 797 5195 99 3 25 chr1 27876571 27877346 -169318086 - L1Md_F2 LINE L1 0 6582 5825 5 797 27 49 0 32 chr1 27877346 27877361 -169318071 + AT_rich Low_complexity Low_complexity 1 14 0 5 797 224 333 24 0 chr1 27877368 27877452 -169317980 + B4A SINE B4 81 166 -126 5 797 209 200 0 0 chr1 27877641 27877674 -169317758 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 797 303 49 0 0 chr1 27877674 27877715 -169317717 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 797 209 200 0 0 chr1 27877715 27877721 -169317711 + (TA)n Simple_repeat Simple_repeat 1 6 0 5 797 278 295 0 13 chr1 27877950 27878029 -169317403 + ID4_ SINE ID 4 81 -2 5 797 24 85 0 0 chr1 27880629 27880688 -169314744 + AT_rich Low_complexity Low_complexity 1 59 0 5 797 5010 188 21 12 chr1 27880708 27882336 -169313096 - Lx2 LINE L1 -425 6572 4938 5 797 396 0 0 0 chr1 27882336 27882380 -169313052 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 797 4747 198 9 12 chr1 27882380 27882407 -169313025 - Lx2 LINE L1 -946 4937 4912 5 797 308 324 58 49 chr1 27882781 27882988 -169312444 - L1M4 LINE L1 -1221 4925 4712 5 797 540 0 0 0 chr1 27882988 27883048 -169312384 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 797 2555 136 38 18 chr1 27883050 27883499 -169311933 - Lx3A LINE L1 -18 6963 6506 5 797 308 324 58 49 chr1 27883499 27883512 -169311920 - L1M4 LINE L1 -1435 4711 4700 5 797 422 299 63 44 chr1 27884119 27884434 -169310998 - L1MA6 LINE L1 -51 6249 5929 5 797 237 139 0 0 chr1 27884550 27884593 -169310839 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 797 652 272 245 28 chr1 27885087 27885436 -169309996 + Lx7 LINE L1 7054 7471 -225 6 797 236 30 30 0 chr1 27885436 27885469 -169309963 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 797 652 272 245 28 chr1 27885469 27885498 -169309934 + Lx7 LINE L1 7472 7494 -202 6 797 606 243 0 27 chr1 27885498 27885646 -169309786 - B1_Mm SINE Alu -1 146 3 6 797 652 272 245 28 chr1 27885646 27885772 -169309660 + Lx7 LINE L1 7495 7669 -27 6 797 255 219 50 42 chr1 27885837 27885956 -169309476 - L1M4 LINE L1 -2400 3746 3627 5 797 378 0 0 0 chr1 27886057 27886099 -169309333 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 797 21 0 0 0 chr1 27886258 27886279 -169309153 + AT_rich Low_complexity Low_complexity 1 21 0 6 797 4396 157 4 7 chr1 27886750 27887489 -169307943 + RMER19A LTR ERVK 1 737 0 6 797 22 0 0 0 chr1 27887835 27887857 -169307575 + AT_rich Low_complexity Low_complexity 1 22 0 6 797 1803 103 0 4 chr1 27888404 27888668 -169306764 - L1_Mus1 LINE L1 -414 6153 5891 6 797 1052 90 21 0 chr1 27888743 27888887 -169306545 + B1_Mm SINE Alu 1 147 0 6 797 2983 28 0 0 chr1 27888888 27889243 -169306189 - L1Md_T LINE L1 -555 6027 5673 6 797 4677 41 0 0 chr1 27889243 27889803 -169305629 + L1Md_T LINE L1 6023 6582 0 6 797 423 0 0 0 chr1 27889981 27890028 -169305404 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 797 342 0 0 0 chr1 27890489 27890527 -169304905 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 797 1881 160 22 3 chr1 27891499 27891819 -169303613 + ORR1A3 LTR MaLR 1 326 0 6 797 234 269 51 0 chr1 27891948 27892026 -169303406 + Lx9 LINE L1 7555 7636 -8 6 797 548 277 36 7 chr1 27892063 27892201 -169303231 + B1F2 SINE Alu 8 149 0 6 797 460 339 6 22 chr1 27892315 27892496 -169302936 + Charlie25 DNA MER1_type 2082 2259 -265 6 797 1083 271 197 22 chr1 27892809 27893450 -169301982 - L1_Mur3 LINE L1 -2755 3125 2373 6 797 323 303 8 24 chr1 27893670 27893795 -169301637 + Lx7 LINE L1 6691 6813 -883 6 797 1132 305 31 54 chr1 27893797 27894207 -169301225 + Lx7 LINE L1 6771 7168 -528 6 797 207 0 0 0 chr1 27894207 27894230 -169301202 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 797 1132 305 31 54 chr1 27894230 27894373 -169301059 + Lx7 LINE L1 7169 7311 -385 6 797 617 0 0 14 chr1 27894928 27895002 -169300430 + (TTTTG)n Simple_repeat Simple_repeat 3 75 0 6 797 218 184 0 0 chr1 27895810 27895848 -169299584 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 797 398 287 49 0 chr1 27896232 27896354 -169299078 - MTEb LTR MaLR 0 379 252 6 797 289 318 45 8 chr1 27896399 27896532 -169298900 - RMER15 LTR ERVL -60 515 378 6 797 344 276 83 38 chr1 27896631 27896763 -169298669 - HAL1-3A_ME LINE L1 -737 2121 1984 6 797 515 346 108 13 chr1 27896773 27897080 -169298352 - Lx8 LINE L1 -149 7324 6989 6 797 528 339 26 11 chr1 27897372 27897563 -169297869 - MTEb LTR MaLR -185 194 1 6 797 21 0 0 0 chr1 27898220 27898241 -169297191 + AT_rich Low_complexity Low_complexity 1 21 0 6 797 587 308 43 0 chr1 27898964 27899149 -169296283 - MTD LTR MaLR -4 415 223 6 797 651 292 121 15 chr1 27899181 27899362 -169296070 - Lx6 LINE L1 0 7460 7271 6 797 1143 117 0 0 chr1 27899362 27899542 -169295890 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 797 1043 285 178 18 chr1 27899542 27899948 -169295484 - Lx6 LINE L1 -190 7270 6790 6 797 4718 164 71 19 chr1 27899954 27900953 -169294479 - L1_Mur1 LINE L1 -822 5055 4005 6 797 4948 79 0 7 chr1 27901388 27902061 -169293371 - L1Md_F2 LINE L1 -6 6576 5909 6 797 29 60 0 0 chr1 27902068 27902118 -169293314 + AT_rich Low_complexity Low_complexity 1 50 0 6 797 554 203 149 36 chr1 27903334 27903528 -169291904 - L1_Mur1 LINE L1 -6762 222 7 6 797 1639 128 0 3 chr1 27903601 27903895 -169291537 + RLTR23 LTR ERV1 104 429 -1 6 797 282 29 0 0 chr1 27903895 27903930 -169291502 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 797 228 211 0 0 chr1 27903930 27904001 -169291431 + GA-rich Low_complexity Low_complexity 2 72 0 6 797 230 303 60 177 chr1 27904006 27904271 -169291161 - MER67C LTR ERV1 -429 282 49 6 797 4046 215 91 21 chr1 27904494 27905265 -169290167 + RLTR25B LTR ERVK 1 811 -217 6 797 195 42 0 0 chr1 27905265 27905289 -169290143 + (CAGC)n Simple_repeat Simple_repeat 1 24 0 6 797 369 0 0 0 chr1 27905289 27905330 -169290102 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 797 4046 215 91 21 chr1 27905330 27905353 -169290079 + RLTR25B LTR ERVK 812 829 -199 6 797 626 146 46 0 chr1 27905353 27905483 -169289949 + L1_Mus3 LINE L1 6502 6637 -1 6 797 4046 215 91 21 chr1 27905483 27905647 -169289785 + RLTR25B LTR ERVK 830 1026 -2 6 797 7466 67 2 0 chr1 27906562 27907521 -169287911 + L1Md_F2 LINE L1 5608 6568 -14 6 797 542 151 0 9 chr1 27907641 27907748 -169287684 + (TA)n Simple_repeat Simple_repeat 2 107 0 6 797 614 181 0 34 chr1 27907774 27907805 -169287627 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 797 2066 230 152 20 chr1 27907805 27908454 -169286978 - RMER19A LTR ERVK 0 737 3 6 797 614 181 0 34 chr1 27908454 27908599 -169286833 + (TG)n Simple_repeat Simple_repeat 2 142 0 6 797 228 277 0 0 chr1 27908999 27909064 -169286368 + GA-rich Low_complexity Low_complexity 2 66 0 6 797 291 54 0 0 chr1 27909330 27909367 -169286065 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 797 486 0 0 0 chr1 27909382 27909436 -169285996 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 797 723 42 0 0 chr1 27909904 27909999 -169285433 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 797 220 363 0 62 chr1 27910096 27910193 -169285239 - B4A SINE B4 -125 167 77 6 797 527 122 0 11 chr1 27910387 27910478 -169284954 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 797 180 77 0 0 chr1 27910645 27910671 -169284761 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 797 23136 66 144 1 chr1 27911082 27915159 -169280273 - L1Md_F2 LINE L1 -3 6579 1921 6 99 19654 97 5 20 chr1 27915153 27918383 -169277049 - L1Md_F LINE L1 -1736 4147 964 6 798 1864 139 30 12 chr1 27918402 27918737 -169276695 - Lx LINE L1 -3 6651 6311 6 798 7565 74 7 1 chr1 27919167 27920721 -169274711 - L1Md_F2 LINE L1 -12 6570 5010 6 798 2974 171 68 2 chr1 27920719 27921252 -169274180 - L1Md_F LINE L1 -5667 949 382 6 798 329 344 45 19 chr1 27921347 27921504 -169273928 - MTD LTR MaLR -130 289 129 6 798 3237 175 38 35 chr1 27921833 27922597 -169272835 - RMER17B LTR ERVK 0 958 1 6 798 619 223 7 48 chr1 27923191 27923337 -169272095 - B1_Mur3 SINE Alu -9 140 1 6 798 21 0 0 0 chr1 27924319 27924340 -169271092 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 278 115 0 19 chr1 27924426 27924479 -169270953 + (TCTCCC)n Simple_repeat Simple_repeat 5 56 0 6 798 443 207 167 26 chr1 27924723 27924837 -169270595 - B3 SINE B2 -86 130 1 6 798 28523 123 7 4 chr1 27924839 27927399 -169268033 - L1_Mus2 LINE L1 -523 6043 3479 6 798 313 39 0 38 chr1 27927399 27927452 -169267980 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 798 28523 134 8 4 chr1 27927452 27929806 -169265626 - L1_Mus2 LINE L1 -2405 3478 1108 6 798 2714 170 3 78 chr1 27929773 27930347 -169265085 - L1_Mus2 LINE L1 -5411 1205 675 6 798 21 0 0 0 chr1 27930417 27930438 -169264994 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 1051 98 14 0 chr1 27930438 27930581 -169264851 + B1_Mur4 SINE Alu 1 145 -5 6 798 387 0 0 0 chr1 27930585 27930628 -169264804 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 798 404 342 0 0 chr1 27930967 27931078 -169264354 - ID_B1 SINE B4 -10 214 104 6 798 1848 217 31 14 chr1 27931248 27931668 -169263764 - RMER6A LTR ERVK -4 752 326 6 798 608 342 64 14 chr1 27931734 27932016 -169263416 + Lx8 LINE L1 6967 7262 -211 6 798 1055 241 42 47 chr1 27932027 27932404 -169263028 + RLTR20B3 LTR ERVK 13 443 -134 6 798 315 264 34 116 chr1 27932454 27932600 -169262832 + Lx8 LINE L1 7241 7374 -99 6 798 21 0 0 0 chr1 27932896 27932917 -169262515 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 377 299 0 0 chr1 27933510 27933607 -169261825 - Lx7 LINE L1 -793 6903 6807 6 798 2028 248 122 37 chr1 27933570 27934332 -169261100 + Lx7 LINE L1 6868 7694 -2 6 798 218 271 0 0 chr1 27937252 27937300 -169258132 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 798 22 0 0 0 chr1 27937528 27937550 -169257882 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 299 65 22 0 chr1 27938701 27938747 -169256685 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 798 837 191 89 67 chr1 27938846 27938897 -169256535 + RLTR14 LTR ERV1 120 168 -214 6 798 2041 182 52 7 chr1 27938897 27939323 -169256109 - Lx LINE L1 0 6654 6210 6 798 837 191 89 67 chr1 27939323 27939496 -169255936 + RLTR14 LTR ERV1 169 349 -33 6 798 341 356 56 38 chr1 27939773 27939986 -169255446 + ID_B1 SINE B4 2 218 -6 6 798 195 69 0 0 chr1 27941646 27941675 -169253757 + (T)n Simple_repeat Simple_repeat 1 29 0 6 798 323 368 27 14 chr1 27941886 27942032 -169253400 + B1F SINE Alu 2 149 0 6 798 213 39 0 0 chr1 27942915 27942941 -169252491 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 6 798 896 142 24 6 chr1 27943083 27943253 -169252179 - Lx3A LINE L1 -3 6978 6806 6 798 530 13 25 25 chr1 27944991 27945072 -169250360 + (TTCTC)n Simple_repeat Simple_repeat 4 84 0 6 798 2168 102 9 58 chr1 27945294 27945637 -169249795 + ORR1A2 LTR MaLR 2 327 0 6 798 266 305 92 18 chr1 27947877 27948094 -169247338 + MER2 DNA MER2_type 52 284 -61 6 798 1102 320 16 38 chr1 27948638 27949005 -169246427 + MTE2a LTR MaLR 19 377 -2 6 798 911 235 36 9 chr1 27949058 27949281 -169246151 + Lx6 LINE L1 7228 7456 -4 6 798 257 277 10 10 chr1 27949415 27949517 -169245915 - Lx9 LINE L1 -7 7637 7536 6 798 25 0 0 0 chr1 27949520 27949545 -169245887 + AT_rich Low_complexity Low_complexity 1 25 0 6 798 215 200 46 0 chr1 27949547 27949612 -169245820 + (CATA)n Simple_repeat Simple_repeat 3 70 0 6 798 571 299 64 55 chr1 27950608 27950827 -169244605 - ID_B1 SINE B4 0 224 4 6 798 748 143 18 12 chr1 27951395 27951454 -169243978 + polypyrimidine Low_complexity Low_complexity 106 166 0 6 798 1497 28 0 0 chr1 27951454 27951632 -169243800 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 6 798 748 143 18 12 chr1 27951632 27951735 -169243697 + polypyrimidine Low_complexity Low_complexity 4 105 0 6 798 243 281 10 20 chr1 27952054 27952152 -169243280 + L1M2 LINE L1 5517 5613 -684 6 798 378 301 60 84 chr1 27953190 27953213 -169242219 - RSINE1 SINE B4 -1 164 142 6 798 606 51 0 0 chr1 27953213 27953291 -169242141 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 798 378 301 60 84 chr1 27953291 27953434 -169241998 - RSINE1 SINE B4 -24 141 2 6 798 333 253 128 131 chr1 27953634 27953970 -169241462 - MER92B LTR ERV1 -38 598 264 6 798 207 0 0 0 chr1 27953986 27954009 -169241423 + (T)n Simple_repeat Simple_repeat 1 23 0 7 798 23 33 0 0 chr1 27954696 27954726 -169240706 + AT_rich Low_complexity Low_complexity 1 30 0 7 798 232 227 33 33 chr1 27955117 27955208 -169240224 + Lx9 LINE L1 7403 7493 -151 7 798 28 29 0 0 chr1 27955282 27955317 -169240115 + AT_rich Low_complexity Low_complexity 1 35 0 7 798 21 71 0 0 chr1 27956218 27956260 -169239172 + AT_rich Low_complexity Low_complexity 1 42 0 7 798 297 0 0 0 chr1 27956997 27957030 -169238402 + (T)n Simple_repeat Simple_repeat 1 33 0 7 798 751 58 10 0 chr1 27957030 27957134 -169238298 - B1_Mm SINE Alu 0 147 43 7 798 258 95 0 0 chr1 27959222 27959264 -169236168 + (A)n Simple_repeat Simple_repeat 1 42 0 7 798 697 178 89 0 chr1 27959418 27959564 -169235868 + Lx3C LINE L1 6817 6975 -1 7 798 331 119 191 56 chr1 27959647 27959736 -169235696 - L1_Mur3 LINE L1 -1513 4367 4267 7 798 4227 110 67 3 chr1 27959772 27960456 -169234976 - L1_Mus4 LINE L1 -3 6633 5906 7 798 1305 264 130 31 chr1 27960466 27960911 -169234521 + Lx6 LINE L1 6968 7456 -4 7 798 46 0 0 0 chr1 27961075 27961121 -169234311 + AT_rich Low_complexity Low_complexity 1 46 0 7 798 1683 104 4 8 chr1 27961129 27961372 -169234060 + Lx2 LINE L1 6396 6637 -360 7 798 1371 134 9 4 chr1 27961360 27961585 -169233847 + Lx2 LINE L1 6765 6990 -7 7 798 518 0 16 0 chr1 27961589 27961651 -169233781 + (TAAAA)n Simple_repeat Simple_repeat 2 64 0 7 798 290 363 91 10 chr1 27962004 27962229 -169233203 + L1M4 LINE L1 48 292 -6738 7 798 180 0 0 0 chr1 27962229 27962249 -169233183 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 798 290 363 91 10 chr1 27962249 27962332 -169233100 + L1M4 LINE L1 293 380 -6650 7 798 218 250 54 0 chr1 27962548 27962604 -169232828 + (CAGAGA)n Simple_repeat Simple_repeat 4 62 0 7 798 318 311 93 28 chr1 27963856 27964071 -169231361 + L1M4 LINE L1 1856 2084 -4920 7 798 447 311 36 16 chr1 27964267 27964519 -169230913 + L1M4 LINE L1 3072 3328 -3775 7 798 2003 243 79 26 chr1 27965551 27966194 -169229238 + Lx6 LINE L1 5594 6270 -1190 7 798 237 315 132 33 chr1 27966637 27966788 -169228644 - MTC LTR MaLR 0 419 254 7 798 232 276 0 0 chr1 27966898 27966941 -169228491 + A-rich Low_complexity Low_complexity 1 43 0 7 798 372 59 0 0 chr1 27966941 27966992 -169228440 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 798 232 276 0 0 chr1 27966992 27967035 -169228397 + A-rich Low_complexity Low_complexity 44 86 0 7 798 306 299 25 13 chr1 27967038 27967156 -169228276 - MTC LTR MaLR -298 121 2 7 798 2228 95 48 28 chr1 27967688 27968044 -169227388 - L1_Mus2 LINE L1 0 6566 6204 7 798 288 312 0 81 chr1 27968093 27968229 -169227203 + RLTR12B LTR ERVK 9 133 -395 7 798 432 304 77 49 chr1 27968234 27968521 -169226911 + RLTR15 LTR ERVK 36 330 -29 7 798 231 202 21 11 chr1 27969374 27969469 -169225963 + CT-rich Low_complexity Low_complexity 1 96 0 7 798 319 302 66 52 chr1 27969476 27969748 -169225684 - L1MC LINE L1 -2452 5543 5268 7 798 923 153 0 0 chr1 27970034 27970178 -169225254 - B1_Mus1 SINE Alu -4 144 1 7 798 250 268 42 19 chr1 27970233 27970339 -169225093 - L1_Mur3 LINE L1 -983 4897 4789 7 798 293 338 27 88 chr1 27970367 27970662 -169224770 + L1M2 LINE L1 5438 5714 -583 7 798 370 321 214 0 chr1 27970903 27971107 -169224325 - MTE2b LTR MaLR -40 339 92 7 798 232 184 20 0 chr1 27974081 27974130 -169221302 + CT-rich Low_complexity Low_complexity 2 51 0 7 798 23 0 0 0 chr1 27974584 27974607 -169220825 + AT_rich Low_complexity Low_complexity 1 23 0 7 798 208 0 62 0 chr1 27975031 27975063 -169220369 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 798 1042 318 61 102 chr1 27975123 27975651 -169219781 + Lx9 LINE L1 6466 6935 -709 7 798 3753 97 7 16 chr1 27975651 27976207 -169219225 - L1_Mus2 LINE L1 0 6566 6016 7 798 1042 318 61 102 chr1 27976207 27976665 -169218767 + Lx9 LINE L1 6936 7411 -233 7 798 1528 240 99 56 chr1 27976667 27977680 -169217752 - RMER13B LTR ERVK -23 935 1 7 798 510 17 0 0 chr1 27977720 27977779 -169217653 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 798 202 204 0 0 chr1 27977779 27977823 -169217609 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 798 1966 199 3 0 chr1 27977847 27978189 -169217243 - Lx5 LINE L1 -484 6566 6224 7 798 2189 137 24 21 chr1 27978574 27978947 -169216485 - MTB_Mm LTR MaLR 0 407 34 7 798 468 0 0 0 chr1 27978947 27978999 -169216433 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 798 27 81 0 0 chr1 27979266 27979328 -169216104 + AT_rich Low_complexity Low_complexity 1 62 0 7 798 192 77 0 0 chr1 27979466 27979492 -169215940 + (A)n Simple_repeat Simple_repeat 1 26 0 7 798 6255 126 41 12 chr1 27979975 27980690 -169214742 - Lx3A LINE L1 -317 6664 5933 7 798 396 0 0 0 chr1 27980690 27980734 -169214698 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 798 6255 127 27 9 chr1 27980734 27981277 -169214155 - Lx3A LINE L1 -1049 5932 5379 7 798 1747 136 47 13 chr1 27981277 27981560 -169213872 + Lx3A LINE L1 6670 6966 -15 7 798 375 23 0 0 chr1 27981560 27981604 -169213828 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 7 798 1747 136 47 13 chr1 27981604 27981619 -169213813 + Lx3A LINE L1 6967 6978 -3 7 798 416 367 61 71 chr1 27981620 27982045 -169213387 + MLT1D LTR MaLR 85 505 0 7 798 198 0 0 0 chr1 27983580 27983602 -169211830 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 798 396 0 0 0 chr1 27983604 27983648 -169211784 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 798 543 353 53 82 chr1 27984324 27984392 -169211040 + MTEa LTR MaLR 1 48 -331 7 798 1099 58 0 0 chr1 27984392 27984529 -169210903 - B1_Mm SINE Alu -9 138 2 7 798 543 353 53 82 chr1 27984529 27984837 -169210595 + MTEa LTR MaLR 49 366 -13 7 798 624 207 13 27 chr1 27985756 27985905 -169209527 - B1_Mur3 SINE Alu -2 147 1 7 798 201 74 0 0 chr1 27986553 27986580 -169208852 + (T)n Simple_repeat Simple_repeat 1 27 0 7 798 5688 126 21 61 chr1 27986589 27987935 -169207497 - L1_Mus4 LINE L1 -80 6556 5263 7 798 519 43 0 0 chr1 27987969 27988038 -169207394 + L1_Mus1 LINE L1 6499 6567 0 7 798 339 25 0 0 chr1 27988379 27988419 -169207013 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 798 887 87 71 39 chr1 27989171 27989355 -169206077 - L1Md_F2 LINE L1 0 6582 6415 7 798 351 386 53 25 chr1 27989355 27989795 -169205637 + L1M5 LINE L1 2305 2772 -3374 7 798 25 31 0 0 chr1 27990023 27990055 -169205377 + AT_rich Low_complexity Low_complexity 1 32 0 7 798 746 303 72 21 chr1 27990755 27990991 -169204441 - Lx7 LINE L1 -363 7333 7086 7 798 342 0 0 0 chr1 27990991 27991029 -169204403 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 798 746 303 72 21 chr1 27991029 27991082 -169204350 - Lx7 LINE L1 -611 7085 7029 7 798 284 91 0 52 chr1 27991082 27991140 -169204292 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 7 798 2929 132 6 0 chr1 27991148 27991625 -169203807 - L1_Mus4 LINE L1 0 6636 6157 7 798 213 356 103 29 chr1 27991966 27992102 -169203330 - B4 SINE B4 -131 161 16 7 798 21 0 0 0 chr1 27992161 27992182 -169203250 + AT_rich Low_complexity Low_complexity 1 21 0 7 798 234 173 48 24 chr1 27992192 27992275 -169203157 + (TGAA)n Simple_repeat Simple_repeat 2 86 0 7 798 1774 275 62 48 chr1 27992756 27993385 -169202047 - Lx9 LINE L1 -330 7314 6677 7 798 762 222 119 0 chr1 27993386 27993638 -169201794 + Lx9 LINE L1 7341 7622 -22 7 798 27 49 0 0 chr1 27993638 27993679 -169201753 + AT_rich Low_complexity Low_complexity 1 41 0 7 798 3012 199 41 68 chr1 27994112 27994143 -169201289 + RMER6D LTR ERVK 3 33 -687 7 798 2814 137 35 2 chr1 27994143 27994603 -169200829 + MT2C_Mm LTR ERVL 1 475 0 7 798 3012 199 41 68 chr1 27994603 27995304 -169200128 + RMER6D LTR ERVK 34 715 -5 7 798 979 128 0 0 chr1 27995447 27995595 -169199837 - B1_Mus1 SINE Alu 0 148 1 7 798 782 253 11 0 chr1 27995697 27995871 -169199561 + L1VL1 LINE L1 3 178 -6244 7 798 1114 52 72 0 chr1 27995873 27996026 -169199406 + L1_Mus1 LINE L1 6404 6567 0 7 798 1148 152 5 0 chr1 27996035 27996246 -169199186 + MusHAL1 LINE L1 326 537 -2175 7 798 19258 140 21 22 chr1 27996244 27999178 -169196254 + L1_Mm LINE L1 2352 5233 -650 7 798 3165 52 3 0 chr1 27999178 27999562 -169195870 - IAPEY_LTR LTR ERVK 0 385 1 7 798 19258 140 21 22 chr1 27999562 27999999 -169195433 + L1_Mm LINE L1 5234 5718 -165 7 798 6044 117 8 1 chr1 28000000 28000910 -169194522 + L1_Mus3 LINE L1 5721 6636 -2 1 798 2524 189 25 6 chr1 28001444 28001924 -169193508 - Lx3C LINE L1 -8 6968 6480 2 798 1033 238 27 51 chr1 28002028 28002320 -169193112 - Lx2B LINE L1 -4 6996 6712 3 798 2287 197 74 8 chr1 28002314 28002801 -169192631 + Lx2B LINE L1 6095 6613 -387 3 798 21 89 0 0 chr1 28003689 28003745 -169191687 + AT_rich Low_complexity Low_complexity 1 56 0 4 798 183 42 0 0 chr1 28004026 28004050 -169191382 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 798 471 35 0 0 chr1 28004051 28004108 -169191324 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 798 345 273 40 6 chr1 28004184 28004361 -169191071 + L1M2 LINE L1 4258 4440 -1703 7 798 339 304 66 15 chr1 28004370 28004507 -169190925 - ORR1D2 LTR MaLR 0 370 227 8 798 602 214 0 7 chr1 28004507 28004653 -169190779 + CT-rich Low_complexity Low_complexity 3 147 0 9 798 567 211 0 76 chr1 28004689 28004833 -169190599 - B1_Mur4 SINE Alu -9 141 9 1 798 460 380 43 10 chr1 28004834 28005041 -169190391 - ORR1D2 LTR MaLR -156 214 1 8 798 33 0 0 0 chr1 28005103 28005136 -169190296 + AT_rich Low_complexity Low_complexity 1 33 0 1 798 391 282 93 115 chr1 28005204 28005954 -169189478 + L1M2 LINE L1 4575 5308 -835 7 798 225 333 48 0 chr1 28005989 28006073 -169189359 + B1F SINE Alu 19 106 -43 1 798 311 22 65 0 chr1 28006115 28006161 -169189271 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 798 201 252 50 0 chr1 28006307 28006426 -169189006 + (TA)n Simple_repeat Simple_repeat 1 125 0 1 798 216 195 16 63 chr1 28006514 28006640 -169188792 + (TTAA)n Simple_repeat Simple_repeat 2 121 0 1 798 3168 51 5 0 chr1 28007022 28007415 -169188017 + MTA_Mm LTR MaLR 2 396 0 1 798 24 53 0 0 chr1 28009743 28009781 -169185651 + AT_rich Low_complexity Low_complexity 1 38 0 1 798 287 275 25 0 chr1 28011503 28011583 -169183849 - Lx6 LINE L1 -436 7024 6943 1 798 17226 198 18 31 chr1 28012283 28013880 -169181552 + L1_Mur1 LINE L1 891 2496 -3381 1 798 1067 80 0 0 chr1 28013880 28014018 -169181414 + B1_Mus1 SINE Alu 5 142 -6 2 798 516 16 0 0 chr1 28014020 28014081 -169181351 + (GAGTG)n Simple_repeat Simple_repeat 1 61 0 2 798 1161 105 0 0 chr1 28014082 28014253 -169181179 + (GAGAA)n Simple_repeat Simple_repeat 5 175 0 2 798 17226 190 17 34 chr1 28014253 28015435 -169179997 + L1_Mur1 LINE L1 2497 3655 -2222 1 798 3529 29 0 0 chr1 28015435 28015850 -169179582 + L1Md_A LINE L1 6168 6582 0 2 798 17226 190 17 34 chr1 28015850 28017401 -169178031 + L1_Mur1 LINE L1 3656 5157 -720 1 798 2718 305 84 35 chr1 28017405 28018374 -169177058 + Lx6 LINE L1 6231 7264 -196 2 798 3301 46 2 0 chr1 28018374 28018769 -169176663 - MTA_Mm LTR MaLR 0 396 1 2 798 2718 305 84 35 chr1 28018769 28018967 -169176465 + Lx6 LINE L1 7265 7454 -6 2 798 417 39 0 0 chr1 28019668 28019719 -169175713 + (GAAAA)n Simple_repeat Simple_repeat 3 53 0 2 798 403 276 95 20 chr1 28020692 28020840 -169174592 + Lx9 LINE L1 7306 7464 -180 2 798 486 0 0 0 chr1 28020848 28020902 -169174530 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 798 312 27 0 0 chr1 28020905 28020942 -169174490 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 798 526 243 16 20 chr1 28020967 28021127 -169174305 + RLTR20B3 LTR ERVK 359 518 -10 3 798 21 0 0 0 chr1 28021373 28021394 -169174038 + AT_rich Low_complexity Low_complexity 1 21 0 3 798 297 151 0 0 chr1 28021887 28021940 -169173492 + A-rich Low_complexity Low_complexity 1 53 0 3 798 525 94 0 0 chr1 28022041 28022126 -169173306 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 798 23 33 0 0 chr1 28022824 28022854 -169172578 + AT_rich Low_complexity Low_complexity 1 30 0 3 798 24 0 0 0 chr1 28024035 28024059 -169171373 + AT_rich Low_complexity Low_complexity 1 24 0 3 798 1616 143 88 3 chr1 28024072 28024366 -169171066 - Lx3B LINE L1 -1 6972 6654 3 798 1630 167 131 3 chr1 28024366 28024563 -169170869 + Lx3B LINE L1 6277 6499 -474 3 798 2760 105 100 2 chr1 28024563 28025003 -169170429 - L1_Mus4 LINE L1 -1 6635 6153 3 798 1630 167 131 3 chr1 28025003 28025141 -169170291 + Lx3B LINE L1 6500 6654 -319 3 798 24 53 0 0 chr1 28025141 28025179 -169170253 + AT_rich Low_complexity Low_complexity 1 38 0 3 798 1466 214 171 0 chr1 28025484 28025829 -169169603 + L1_Mur2 LINE L1 429 832 -6254 3 798 3255 129 40 2 chr1 28025828 28025901 -169169531 + L1_Mur2 LINE L1 1360 1447 -4430 3 798 180 0 0 0 chr1 28025901 28025921 -169169511 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 798 3255 129 40 2 chr1 28025921 28026422 -169169010 + L1_Mur2 LINE L1 1448 1955 -3922 3 798 286 155 52 0 chr1 28026420 28026478 -169168954 + L1_Mur2 LINE L1 3320 3380 -2497 3 798 1375 219 16 23 chr1 28026478 28026787 -169168645 - MTB_Mm LTR MaLR -100 307 1 4 798 358 341 47 33 chr1 28027131 28027343 -169168089 + MTD LTR MaLR 1 215 -204 4 798 1938 228 17 7 chr1 28027392 28027807 -169167625 - MTC LTR MaLR -2 419 1 4 798 306 73 0 0 chr1 28027852 28027893 -169167539 + (T)n Simple_repeat Simple_repeat 1 41 0 4 798 571 171 241 14 chr1 28027990 28028063 -169167369 - RLTR20C LTR ERVK -63 471 429 4 798 399 21 0 0 chr1 28028063 28028111 -169167321 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 798 571 126 198 16 chr1 28028111 28028201 -169167231 - RLTR20C LTR ERVK -106 428 329 4 798 4451 54 14 4 chr1 28028203 28028764 -169166668 + L1Md_F2 LINE L1 5996 6562 -20 4 798 1044 164 78 19 chr1 28028765 28028970 -169166462 - RLTR20C LTR ERVK -195 339 123 4 798 22 35 0 0 chr1 28028970 28028999 -169166433 + AT_rich Low_complexity Low_complexity 1 29 0 4 798 4620 103 24 0 chr1 28029545 28030214 -169165218 - L1_Mus1 LINE L1 0 6567 5883 4 798 33094 109 10 7 chr1 28030218 28036743 -169158689 - L1Md_F2 LINE L1 -12 6570 52 5 798 9171 135 2 10 chr1 28036768 28038260 -169157172 - L1_Mm LINE L1 -12 5871 4392 5 798 523 155 0 20 chr1 28038251 28038350 -169157082 + L1_Mm LINE L1 4338 4434 -1449 5 798 4536 83 2 10 chr1 28038350 28038972 -169156460 - L1Md_F2 LINE L1 -12 6570 5954 5 798 2175 75 3 0 chr1 28038972 28039264 -169156168 + L1Md_F2 LINE L1 5671 5963 -619 5 798 1782 74 0 0 chr1 28039257 28039486 -169155946 - L1_Mm LINE L1 -86 5797 5569 5 798 1182 89 0 16 chr1 28039730 28039913 -169155519 + B2_Mm2 SINE B2 15 194 -1 5 798 290 280 43 11 chr1 28039952 28040046 -169155386 + B4A SINE B4 136 232 -60 5 798 291 122 0 0 chr1 28040124 28040173 -169155259 + (TCC)n Simple_repeat Simple_repeat 1 49 0 5 798 582 15 0 0 chr1 28040213 28040280 -169155152 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 798 324 0 0 0 chr1 28040280 28040315 -169155117 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 798 488 319 93 71 chr1 28041138 28041502 -169153930 - MTEa LTR MaLR -4 375 4 5 798 288 360 73 78 chr1 28041661 28042005 -169153427 + ORR1D2 LTR MaLR 1 342 -28 6 798 21 0 0 0 chr1 28042053 28042074 -169153358 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 3757 72 0 20 chr1 28042141 28042680 -169152752 - L1_Mur1 LINE L1 -1863 4023 3496 6 798 5556 99 68 32 chr1 28042680 28043605 -169151827 + Lx3_Mus LINE L1 6044 7001 -8 6 798 22 0 0 0 chr1 28043605 28043627 -169151805 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 425 314 30 42 chr1 28044012 28044178 -169151254 - LTR88b LTR Gypsy? -465 372 209 6 798 1118 267 141 92 chr1 28044645 28044713 -169150719 - MT2B LTR ERVL 0 601 544 6 798 246 128 0 0 chr1 28044713 28044752 -169150680 + (CATA)n Simple_repeat Simple_repeat 1 39 0 6 798 1118 267 141 92 chr1 28044752 28045256 -169150176 - MT2B LTR ERVL -58 543 1 6 798 7513 62 20 0 chr1 28045595 28046603 -169148829 + L1_Mus1 LINE L1 5540 6567 0 6 798 330 87 0 0 chr1 28046611 28046657 -169148775 + (A)n Simple_repeat Simple_repeat 1 46 0 6 799 180 0 0 0 chr1 28049558 28049578 -169145854 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 799 467 17 17 0 chr1 28049678 28049738 -169145694 + (TTG)n Simple_repeat Simple_repeat 2 62 0 7 799 307 236 14 27 chr1 28050073 28050147 -169145285 - L1Md_Gf LINE L1 -6015 507 435 7 799 366 67 0 0 chr1 28050137 28050182 -169145250 + L1Md_T LINE L1 5542 5586 -297 7 799 8400 36 0 0 chr1 28050182 28051178 -169144254 + L1Md_T LINE L1 5587 6582 0 7 799 24 32 0 0 chr1 28053047 28053078 -169142354 + AT_rich Low_complexity Low_complexity 1 31 0 7 799 550 282 66 33 chr1 28053539 28053722 -169141710 - MIR3 SINE MIR -12 196 8 7 799 22 0 0 0 chr1 28054265 28054287 -169141145 + AT_rich Low_complexity Low_complexity 1 22 0 7 799 517 353 124 79 chr1 28056191 28056876 -169138556 + MTE-int LTR MaLR 829 1544 -36 7 799 1630 194 110 3 chr1 28057006 28057362 -169138070 + ORR1B1 LTR MaLR 1 394 0 7 799 3075 136 219 72 chr1 28057384 28057815 -169137617 + RMER17A2 LTR ERVK 1 444 -462 7 799 674 84 9 0 chr1 28057815 28057922 -169137510 + (TC)n Simple_repeat Simple_repeat 2 109 0 8 799 3075 136 219 72 chr1 28057922 28058276 -169137156 + RMER17A2 LTR ERVK 445 900 -6 7 799 21 0 0 0 chr1 28058624 28058645 -169136787 + AT_rich Low_complexity Low_complexity 1 21 0 8 799 520 318 95 44 chr1 28058800 28059096 -169136336 - Lx8 LINE L1 -314 7159 6849 8 799 489 62 0 0 chr1 28061387 28061452 -169133980 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 799 6099 193 30 1 chr1 28061484 28062643 -169132789 - Lx4A LINE L1 -1 7057 5865 8 799 2728 85 15 15 chr1 28062643 28063037 -169132395 - MTB_Mm LTR MaLR -6 401 8 8 799 1651 105 16 0 chr1 28063043 28063290 -169132142 - Lx4A LINE L1 -1180 5878 5628 8 799 1651 277 50 20 chr1 28063427 28063983 -169131449 + RMER15 LTR ERVL 1 573 -2 8 799 2115 157 98 27 chr1 28064169 28064681 -169130751 - RMER17D LTR ERVK 0 889 342 8 799 578 202 8 8 chr1 28064681 28064806 -169130626 - RMER17A-int LTR ERVK -1601 127 3 8 799 465 19 0 0 chr1 28065233 28065287 -169130145 + (TCC)n Simple_repeat Simple_repeat 2 55 0 8 799 888 10 0 0 chr1 28065368 28065469 -169129963 + (GAA)n Simple_repeat Simple_repeat 2 102 0 8 799 203 103 26 0 chr1 28065554 28065593 -169129839 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 799 326 381 17 97 chr1 28065633 28065921 -169129511 - B4A SINE B4 -22 270 6 9 799 3781 218 17 15 chr1 28066687 28067708 -169127724 - L1_Mur3 LINE L1 -2142 3738 2716 9 799 274 179 0 138 chr1 28067721 28067762 -169127670 - Lx9 LINE L1 -392 7252 7218 9 799 2222 200 30 120 chr1 28067762 28068518 -169126914 - RMER6C LTR ERVK -2 688 1 9 799 274 179 0 138 chr1 28068518 28068541 -169126891 - Lx9 LINE L1 -427 7217 7197 9 799 487 214 211 15 chr1 28068541 28068674 -169126758 + Lx9 LINE L1 6837 6995 -649 9 799 820 263 14 28 chr1 28068683 28068894 -169126538 - ORR1D1 LTR MaLR -166 208 1 9 799 232 280 9 114 chr1 28069169 28069274 -169126158 - PB1D10 SINE Alu 0 117 24 9 799 390 114 0 25 chr1 28069394 28069475 -169125957 - L1Md_F2 LINE L1 0 6582 6504 9 799 23 0 0 0 chr1 28069877 28069900 -169125532 + AT_rich Low_complexity Low_complexity 1 23 0 9 799 2441 69 28 59 chr1 28070658 28071045 -169124387 + L1_Mus2 LINE L1 6192 6566 0 1 799 387 0 0 0 chr1 28071818 28071861 -169123571 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 799 47 44 0 0 chr1 28072298 28072366 -169123066 + AT_rich Low_complexity Low_complexity 1 68 0 1 799 324 0 0 0 chr1 28072587 28072623 -169122809 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 799 614 296 49 26 chr1 28072868 28073390 -169122042 - L1_Rod LINE L1 -544 5612 5006 1 799 736 266 64 13 chr1 28073402 28073638 -169121794 - RCHARR1 DNA MER1_type -485 489 242 1 799 291 336 49 28 chr1 28073651 28073795 -169121637 - RCHARR1 DNA MER1_type -818 156 10 1 799 386 273 116 87 chr1 28074152 28074429 -169121003 + Charlie1a DNA MER1_type 813 1097 -358 1 799 23 0 0 0 chr1 28074430 28074453 -169120979 + AT_rich Low_complexity Low_complexity 1 23 0 1 799 4330 194 103 13 chr1 28074979 28075932 -169119500 - Lx3C LINE L1 -26 6950 5912 1 799 1563 173 28 3 chr1 28075936 28076260 -169119172 - L1_Mur2 LINE L1 -2673 3204 2873 1 799 416 392 14 5 chr1 28076325 28076543 -169118889 + MER47B DNA MER2_type 2 221 -197 1 799 291 318 96 91 chr1 28076595 28076676 -169118756 + MER47B DNA MER2_type 231 303 -115 1 799 441 0 0 0 chr1 28076676 28076725 -169118707 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 799 266 0 29 0 chr1 28076725 28076758 -169118674 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 799 291 318 96 91 chr1 28076758 28076862 -169118570 + MER47B DNA MER2_type 304 417 -1 1 799 355 347 12 17 chr1 28077641 28077814 -169117618 + L1M2 LINE L1 4052 4223 -1920 1 799 774 22 0 0 chr1 28077815 28077907 -169117525 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 799 485 305 74 13 chr1 28077995 28078386 -169117046 + L1M2 LINE L1 4213 4608 -1538 1 799 7908 79 2 1 chr1 28079455 28080518 -169114914 + L1Md_F2 LINE L1 4522 5585 -298 1 799 7448 75 1 12 chr1 28080519 28081526 -169113906 + L1Md_F2 LINE L1 5587 6582 0 1 799 341 359 27 18 chr1 28081576 28081797 -169113635 + L1M4c LINE L1 1269 1491 -4893 1 799 40 37 0 0 chr1 28082053 28082107 -169113325 + AT_rich Low_complexity Low_complexity 1 54 0 1 799 258 352 33 0 chr1 28082745 28082836 -169112596 - ORR1E LTR MaLR -253 106 13 1 799 253 255 125 18 chr1 28083098 28083210 -169112222 + MTD LTR MaLR 1 124 -295 1 799 466 274 117 29 chr1 28083226 28083453 -169111979 + MTD LTR MaLR 174 417 -2 1 799 257 233 0 32 chr1 28083980 28084042 -169111390 - RLTR42-int LTR ERVK -1417 4105 4046 1 799 183 42 0 0 chr1 28085157 28085181 -169110251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 799 411 304 12 64 chr1 28085371 28085543 -169109889 - RSINE1 SINE B4 0 165 3 1 799 753 211 74 28 chr1 28086576 28086752 -169108680 - B3 SINE B2 0 216 33 1 799 285 280 107 0 chr1 28086736 28086811 -169108621 - B3 SINE B2 -128 88 6 1 799 1569 45 0 0 chr1 28087040 28087240 -169108192 - L1Md_A LINE L1 0 6582 6383 1 799 2293 181 6 38 chr1 28088234 28088710 -169106722 - RMER6B LTR ERVK 0 461 1 1 799 1713 135 7 17 chr1 28089304 28089598 -169105834 - L1_Mus3 LINE L1 -2 6636 6346 1 799 3908 41 10 0 chr1 28089598 28090083 -169105349 - L1Md_F2 LINE L1 0 6582 6093 1 799 2863 124 0 0 chr1 28090084 28090510 -169104922 - L1_Mus3 LINE L1 -290 6348 5923 1 799 2556 80 77 0 chr1 28090510 28090885 -169104547 + RLTR10A LTR ERVK 1 404 -7 1 799 8439 130 10 16 chr1 28090892 28091533 -169103899 - L1_Mus3 LINE L1 -708 5928 5285 1 799 3324 66 0 20 chr1 28091533 28091980 -169103452 - L1Md_F2 LINE L1 0 6582 6145 1 799 8439 158 18 33 chr1 28091980 28093020 -169102412 - L1_Mus3 LINE L1 -599 5284 4273 1 799 4325 155 40 6 chr1 28093033 28093840 -169101592 - Lx3_Mus LINE L1 -8 7001 6168 1 799 450 0 0 0 chr1 28093848 28093898 -169101534 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 799 585 0 0 0 chr1 28093898 28093962 -169101470 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 799 6623 111 31 23 chr1 28094114 28094517 -169100915 + RLTR13D5 LTR ERVK 1 390 -633 1 799 2758 36 0 12 chr1 28094517 28094857 -169100575 + L1Md_F3 LINE L1 6235 6570 -14 1 799 6623 111 31 23 chr1 28094857 28095467 -169099965 + RLTR13D5 LTR ERVK 391 1022 -1 1 799 1243 130 13 30 chr1 28095467 28095704 -169099728 - L1_Mus3 LINE L1 -17 6621 6389 1 799 6275 156 18 10 chr1 28095706 28095995 -169099437 - L1_Mus3 LINE L1 -1559 4324 4029 1 799 2031 131 13 7 chr1 28095995 28096302 -169099130 - RLTR27 LTR ERVK 0 309 1 1 799 6275 156 18 10 chr1 28096302 28097025 -169098407 - L1_Mus3 LINE L1 -1855 4028 3307 1 799 288 0 0 0 chr1 28097025 28097057 -169098375 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 799 6275 156 18 10 chr1 28097057 28097216 -169098216 - L1_Mus3 LINE L1 -2577 3306 3144 1 799 5733 155 7 52 chr1 28097229 28098963 -169096469 - L1VL4 LINE L1 -1681 1878 217 1 799 1006 236 131 81 chr1 28099499 28099672 -169095760 + ORR1C2 LTR MaLR 8 160 -224 1 799 593 14 14 0 chr1 28099672 28099746 -169095686 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 799 1006 236 131 81 chr1 28099746 28099931 -169095501 + ORR1C2 LTR MaLR 161 384 0 1 799 24 0 0 0 chr1 28100163 28100187 -169095245 + AT_rich Low_complexity Low_complexity 1 24 0 1 799 561 286 58 24 chr1 28100192 28100400 -169095032 + B3 SINE B2 2 216 0 1 799 5518 161 18 38 chr1 28100479 28101566 -169093866 - Lx2B LINE L1 0 7000 5936 1 799 213 108 0 0 chr1 28103950 28103987 -169091445 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 799 303 145 0 0 chr1 28105126 28105195 -169090237 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 1 799 1108 29 36 0 chr1 28105232 28105371 -169090061 - B1_Mus1 SINE Alu 0 148 5 1 799 282 386 19 13 chr1 28105377 28105687 -169089745 - L1MC LINE L1 -1371 4775 4464 1 799 614 346 9 9 chr1 28106470 28106680 -169088752 - B3 SINE B2 -6 210 1 1 799 384 148 0 0 chr1 28106736 28106797 -169088635 + RMER1C Other Other 1126 1186 -156 1 799 1162 100 0 11 chr1 28106809 28106991 -169088441 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 799 319 190 0 39 chr1 28106993 28107097 -169088335 + CT-rich Low_complexity Low_complexity 1 100 0 1 799 501 259 7 28 chr1 28107097 28107240 -169088192 + RMER1C Other Other 1200 1339 -3 1 799 36 62 0 0 chr1 28108472 28108536 -169086896 + AT_rich Low_complexity Low_complexity 1 64 0 1 799 447 19 0 0 chr1 28108708 28108760 -169086672 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 799 339 25 0 0 chr1 28109683 28109723 -169085709 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 799 52 0 0 0 chr1 28109960 28110012 -169085420 + AT_rich Low_complexity Low_complexity 1 52 0 1 799 477 329 62 10 chr1 28110041 28110250 -169085182 - ID_B1 SINE B4 0 224 5 1 799 23 0 0 0 chr1 28110660 28110683 -169084749 + AT_rich Low_complexity Low_complexity 1 23 0 1 799 25 31 0 0 chr1 28111807 28111839 -169083593 + AT_rich Low_complexity Low_complexity 1 32 0 1 799 186 383 49 0 chr1 28112202 28112283 -169083149 - L2a LINE L2 -6 3420 3336 1 799 584 70 12 0 chr1 28112865 28112951 -169082481 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 1 799 351 0 0 0 chr1 28112965 28113004 -169082428 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 799 881 224 203 138 chr1 28113004 28113433 -169081999 - MT2A LTR ERVL -76 457 1 1 799 780 203 0 7 chr1 28113707 28113851 -169081581 + B1_Mus1 SINE Alu 1 143 -5 1 799 1727 171 76 45 chr1 28114192 28114548 -169080884 + Lx4A LINE L1 6506 6872 -186 1 799 2182 244 93 59 chr1 28115659 28116442 -169078990 + RLTR25B LTR ERVK 219 1028 0 1 799 411 21 0 0 chr1 28116484 28116532 -169078900 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 799 210 219 0 0 chr1 28116918 28116959 -169078473 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 799 227 208 38 0 chr1 28116959 28117012 -169078420 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 799 26 82 0 0 chr1 28117105 28117166 -169078266 + AT_rich Low_complexity Low_complexity 1 61 0 1 799 22 88 0 0 chr1 28117265 28117322 -169078110 + AT_rich Low_complexity Low_complexity 1 57 0 1 799 459 35 0 0 chr1 28117830 28117887 -169077545 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 799 469 206 53 8 chr1 28118230 28118362 -169077070 - RCHARR1 DNA MER1_type -197 777 640 1 799 1607 197 31 20 chr1 28118378 28118736 -169076696 - Lx3B LINE L1 -3 6970 6609 1 799 13695 89 13 2 chr1 28118913 28120865 -169074567 + L1Md_F2 LINE L1 3614 5586 -297 1 799 7503 70 3 4 chr1 28120866 28121850 -169073582 + L1Md_F2 LINE L1 5588 6570 -12 1 799 1967 131 3 13 chr1 28122031 28122348 -169073084 - Lx LINE L1 0 6654 6341 1 799 21 0 0 0 chr1 28122358 28122379 -169073053 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 23 68 0 0 chr1 28123082 28123126 -169072306 + AT_rich Low_complexity Low_complexity 1 44 0 1 799 198 0 0 0 chr1 28123315 28123337 -169072095 + (T)n Simple_repeat Simple_repeat 1 22 0 1 799 26 0 0 0 chr1 28123375 28123401 -169072031 + AT_rich Low_complexity Low_complexity 1 26 0 1 799 32 26 0 0 chr1 28124667 28124706 -169070726 + AT_rich Low_complexity Low_complexity 1 39 0 1 799 28 0 0 0 chr1 28124890 28124918 -169070514 + AT_rich Low_complexity Low_complexity 1 28 0 1 799 297 270 67 0 chr1 28126588 28126677 -169068755 - B1_Mur1 SINE Alu -9 140 46 1 799 417 39 0 0 chr1 28126848 28126899 -169068533 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 799 235 312 52 0 chr1 28126983 28127060 -169068372 - RMER15 LTR ERVL -92 483 403 1 799 1297 128 52 292 chr1 28127277 28127516 -169067916 - L1_Mur2 LINE L1 -1026 4851 4624 1 799 180 0 0 0 chr1 28127516 28127536 -169067896 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 799 285 51 0 0 chr1 28127536 28127574 -169067858 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 799 1297 128 52 292 chr1 28127574 28127600 -169067832 - L1_Mur2 LINE L1 -1254 4623 4604 1 799 958 73 0 0 chr1 28127600 28127723 -169067709 + B1_Mus1 SINE Alu 10 132 -16 1 799 306 0 0 0 chr1 28127723 28127757 -169067675 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 799 1297 128 52 292 chr1 28127757 28127789 -169067643 - L1_Mur2 LINE L1 -1274 4603 4601 1 799 5165 70 22 10 chr1 28127789 28128481 -169066951 - L1Md_F2 LINE L1 -14 6568 5869 1 799 1297 138 63 267 chr1 28128481 28128695 -169066737 - L1_Mur2 LINE L1 -1515 4631 4384 1 799 216 200 0 0 chr1 28128833 28128883 -169066549 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 799 33 25 0 0 chr1 28129568 28129608 -169065824 + AT_rich Low_complexity Low_complexity 1 40 0 1 799 21 57 0 0 chr1 28130854 28130889 -169064543 + AT_rich Low_complexity Low_complexity 1 35 0 1 799 23 54 0 0 chr1 28131130 28131167 -169064265 + AT_rich Low_complexity Low_complexity 1 37 0 1 799 738 250 36 23 chr1 28131323 28131544 -169063888 - URR1B DNA MER1_type -1 224 1 1 799 227 114 0 22 chr1 28132270 28132315 -169063117 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 799 1990 49 4 0 chr1 28132554 28132799 -169062633 + L1Md_F2 LINE L1 6318 6563 -19 1 799 337 362 75 23 chr1 28132893 28133191 -169062241 - Lx8 LINE L1 -156 7317 6989 2 799 5537 5 0 0 chr1 28133214 28133830 -169061602 - L1Md_A LINE L1 0 6582 5967 2 799 4121 0 0 0 chr1 28133830 28134344 -169061088 + L1Md_A LINE L1 5432 5945 -637 2 799 30 27 0 0 chr1 28134436 28134473 -169060959 + AT_rich Low_complexity Low_complexity 1 37 0 2 799 21 36 0 0 chr1 28134675 28134703 -169060729 + AT_rich Low_complexity Low_complexity 1 28 0 2 799 21 0 0 0 chr1 28135520 28135541 -169059891 + AT_rich Low_complexity Low_complexity 1 21 0 2 799 5963 91 33 0 chr1 28135680 28136530 -169058902 - L1_Mus2 LINE L1 0 6636 5695 2 799 5992 108 5 0 chr1 28136527 28137381 -169058051 + L1_Mus2 LINE L1 4829 5686 -197 2 799 297 0 0 0 chr1 28138061 28138094 -169057338 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 799 288 308 51 0 chr1 28139066 28139222 -169056210 + L1MD3 LINE L1 7805 7968 -27 2 799 248 221 58 44 chr1 28141040 28141115 -169054317 + PB1D10 SINE Alu 35 119 -8 2 799 256 333 18 62 chr1 28142882 28142997 -169052435 - PB1D10 SINE Alu -34 115 1 2 799 541 285 83 0 chr1 28142997 28143066 -169052366 - ID SINE ID -142 82 2 2 799 3519 167 29 6 chr1 28143510 28144137 -169051295 - RLTR17 LTR ERVK -49 643 3 2 799 483 290 0 0 chr1 28144224 28144331 -169051101 + B3 SINE B2 1 107 -109 2 799 660 56 0 0 chr1 28144344 28144433 -169050999 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 799 26 88 0 0 chr1 28144448 28144516 -169050916 + AT_rich Low_complexity Low_complexity 1 68 0 2 799 1740 239 78 31 chr1 28145365 28145426 -169050006 - Lx7 LINE L1 0 7696 7631 2 799 3992 54 2 31 chr1 28145426 28145944 -169049488 - RLTR1C LTR ERV1 0 503 1 2 799 1740 239 78 31 chr1 28145944 28146435 -169048997 - Lx7 LINE L1 -66 7630 7118 2 799 233 226 160 11 chr1 28146455 28146549 -169048883 + Lx7 LINE L1 7014 7121 -575 2 799 480 145 0 43 chr1 28146792 28146907 -169048525 + CT-rich Low_complexity Low_complexity 5 114 0 2 799 825 107 11 53 chr1 28146907 28147048 -169048384 + polypyrimidine Low_complexity Low_complexity 47 180 0 2 799 957 34 0 92 chr1 28147048 28147244 -169048188 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 799 825 107 11 53 chr1 28147244 28147290 -169048142 + polypyrimidine Low_complexity Low_complexity 1 46 0 2 799 994 50 0 77 chr1 28147300 28147495 -169047937 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 799 414 85 0 0 chr1 28148417 28148476 -169046956 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 799 299 121 33 33 chr1 28148630 28148690 -169046742 + B1_Mur4 SINE Alu 91 150 0 2 799 312 91 0 0 chr1 28148694 28148738 -169046694 + (A)n Simple_repeat Simple_repeat 1 44 0 2 799 2034 156 39 13 chr1 28149089 28149473 -169045959 + ORR1B1 LTR MaLR 1 394 0 2 799 418 357 66 14 chr1 28151394 28151607 -169043825 - MER58A DNA MER1_type 0 224 1 2 799 271 350 121 27 chr1 28152260 28152557 -169042875 + MLT1J-int LTR MaLR 37 361 -1026 2 799 4589 92 3 2 chr1 28152802 28153433 -169041999 + L1_Mus2 LINE L1 5935 6566 0 2 799 296 232 0 58 chr1 28154325 28154412 -169041020 + Lx7 LINE L1 7603 7684 -12 2 799 26 82 0 0 chr1 28154794 28154855 -169040577 + AT_rich Low_complexity Low_complexity 1 61 0 2 799 289 188 47 12 chr1 28155117 28155267 -169040165 + (TA)n Simple_repeat Simple_repeat 1 155 0 2 799 330 247 39 0 chr1 28155566 28155643 -169039789 - B3 SINE B2 -136 80 1 2 799 374 302 31 20 chr1 28156042 28156140 -169039292 + B1_Mur1 SINE Alu 24 122 -25 2 799 265 197 26 0 chr1 28156144 28156220 -169039212 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 799 32 0 0 0 chr1 28156307 28156339 -169039093 + AT_rich Low_complexity Low_complexity 1 32 0 2 799 1239 79 33 11 chr1 28156472 28156652 -169038780 - B2_Mm1t SINE B2 -8 185 2 2 799 408 88 0 0 chr1 28156724 28156781 -169038651 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 799 293 307 90 38 chr1 28157481 28157615 -169037817 - MIR SINE MIR -61 147 9 2 799 31 26 0 0 chr1 28157946 28157984 -169037448 + AT_rich Low_complexity Low_complexity 1 38 0 2 799 264 152 36 60 chr1 28158137 28158221 -169037211 + A-rich Low_complexity Low_complexity 1 82 0 2 799 259 389 76 0 chr1 28158284 28158415 -169037017 + B3 SINE B2 8 148 -68 2 799 566 241 56 14 chr1 28158893 28159036 -169036396 - MLT1D LTR MaLR -6 499 351 2 799 21 36 0 0 chr1 28159501 28159529 -169035903 + AT_rich Low_complexity Low_complexity 1 28 0 2 799 701 305 9 66 chr1 28159532 28159760 -169035672 - B3 SINE B2 0 216 2 2 799 3490 145 56 35 chr1 28159928 28160664 -169034768 + RMER17A LTR ERVK 1 751 0 2 799 1590 201 9 49 chr1 28160931 28161260 -169034172 + ORR1A4 LTR MaLR 6 321 -8 2 799 1855 160 141 14 chr1 28161268 28161678 -169033754 + ORR1A4-int LTR MaLR 5 466 -1497 2 799 11459 115 20 17 chr1 28161679 28163614 -169031818 + Lx3_Mus LINE L1 4073 6002 -1007 2 799 2821 58 2 55 chr1 28163614 28164030 -169031402 - MTA_Mm LTR MaLR 0 396 3 2 799 7875 139 20 31 chr1 28164030 28164988 -169030444 + Lx3_Mus LINE L1 6003 6943 -66 2 799 234 0 0 0 chr1 28165005 28165031 -169030401 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 799 4454 196 74 122 chr1 28165035 28166298 -169029134 + ORR1A4-int LTR MaLR 457 1659 -304 2 799 526 157 0 0 chr1 28166298 28166381 -169029051 + Lx2B LINE L1 6736 6818 -179 2 799 511 283 47 8 chr1 28166382 28166510 -169028922 + ETnERV2-int LTR ERVK 7070 7202 -204 2 799 770 181 66 28 chr1 28166898 28167080 -169028352 + Lx2B LINE L1 6812 7000 0 2 799 322 307 80 42 chr1 28167303 28167565 -169027867 + L1MA9 LINE L1 5953 6224 -88 2 799 28 0 0 0 chr1 28168760 28168788 -169026644 + AT_rich Low_complexity Low_complexity 1 28 0 2 799 26 0 0 0 chr1 28168908 28168934 -169026498 + AT_rich Low_complexity Low_complexity 1 26 0 2 799 276 77 0 0 chr1 28169884 28169923 -169025509 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 799 440 314 44 13 chr1 28170223 28170452 -169024980 + Lx9 LINE L1 889 1124 -6484 2 799 24 32 0 0 chr1 28170532 28170563 -169024869 + AT_rich Low_complexity Low_complexity 1 31 0 2 799 35881 67 3 4 chr1 28170570 28176581 -169018851 - L1Md_F3 LINE L1 0 6584 622 2 799 268 23 68 0 chr1 28176727 28176771 -169018661 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 799 26 0 0 0 chr1 28176916 28176942 -169018490 + AT_rich Low_complexity Low_complexity 1 26 0 2 799 374 292 52 48 chr1 28178370 28178600 -169016832 + Lx9 LINE L1 5798 6028 -1616 2 799 693 34 0 0 chr1 28178641 28178729 -169016703 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 799 307 259 12 12 chr1 28178752 28178834 -169016598 + Lx9 LINE L1 6358 6439 -1205 2 799 3801 186 96 43 chr1 28178834 28179743 -169015689 - RMER17B LTR ERVK 0 958 2 2 799 1304 286 73 38 chr1 28179749 28180298 -169015134 + Lx9 LINE L1 6433 7000 -644 2 799 405 0 0 0 chr1 28180312 28180357 -169015075 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 799 303 28 0 0 chr1 28180357 28180392 -169015040 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 800 432 158 0 0 chr1 28180512 28180607 -169014825 + (CATA)n Simple_repeat Simple_repeat 2 96 0 2 800 426 259 35 35 chr1 28180635 28180751 -169014681 + MT2B LTR ERVL 2 117 -416 2 800 564 301 67 60 chr1 28180818 28181101 -169014331 + MT2B LTR ERVL 277 561 -40 2 800 491 184 28 0 chr1 28181101 28181242 -169014190 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 800 34 42 0 0 chr1 28182024 28182072 -169013360 + AT_rich Low_complexity Low_complexity 1 48 0 2 800 265 234 16 0 chr1 28182476 28182540 -169012892 + Lx7 LINE L1 7190 7254 -442 2 800 562 265 53 0 chr1 28182544 28182714 -169012718 + Lx6 LINE L1 5993 6171 -1289 2 800 361 236 112 9 chr1 28182766 28182873 -169012559 + Lx5 LINE L1 6286 6403 -647 2 800 820 311 124 51 chr1 28182875 28183296 -169012136 + Lx5 LINE L1 6506 6966 -84 2 800 4089 137 8 48 chr1 28183296 28183656 -169011776 - RMER17A LTR ERVK 0 751 395 2 800 603 0 0 0 chr1 28183656 28183723 -169011709 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 800 4089 137 8 48 chr1 28183723 28184145 -169011287 - RMER17A LTR ERVK -357 394 1 2 800 820 311 124 51 chr1 28184145 28184214 -169011218 + Lx5 LINE L1 6967 7032 -18 2 800 8968 112 5 4 chr1 28184550 28186623 -169008809 + L1_Mus3 LINE L1 4559 6633 -5 2 800 216 0 0 0 chr1 28187445 28187469 -169007963 + (T)n Simple_repeat Simple_repeat 1 24 0 2 800 269 171 42 14 chr1 28187476 28187547 -169007885 + T-rich Low_complexity Low_complexity 5 77 0 2 800 2232 127 0 3 chr1 28187560 28187900 -169007532 - Lx LINE L1 -6 6648 6310 2 800 4701 24 0 0 chr1 28189671 28190211 -169005221 + L1Md_T LINE L1 6043 6582 0 2 800 2195 185 12 55 chr1 28190360 28190794 -169004638 + MTC LTR MaLR 3 408 -13 2 800 396 0 0 0 chr1 28190922 28190966 -169004466 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 800 2434 149 0 8 chr1 28190966 28191357 -169004075 - Lx3A LINE L1 -13 6968 6581 2 800 1797 117 0 0 chr1 28191357 28191614 -169003818 - L1_Mur1 LINE L1 -98 5788 5532 2 800 342 45 0 0 chr1 28192185 28192229 -169003203 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 800 15202 109 35 33 chr1 28192307 28194896 -169000536 - L1_Mur1 LINE L1 -356 5530 2935 2 800 252 0 0 0 chr1 28195811 28195839 -168999593 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 800 25 0 0 0 chr1 28195947 28195972 -168999460 + AT_rich Low_complexity Low_complexity 1 25 0 2 800 241 275 43 14 chr1 28196221 28196291 -168999141 - MLT1B LTR MaLR -22 368 297 2 800 27 0 0 0 chr1 28196430 28196457 -168998975 + AT_rich Low_complexity Low_complexity 1 27 0 2 800 1559 202 50 3 chr1 28196458 28196780 -168998652 - Lx3B LINE L1 -2 6971 6635 2 800 274 211 22 44 chr1 28196838 28197021 -168998411 + (TATG)n Simple_repeat Simple_repeat 1 179 0 2 800 680 35 11 0 chr1 28197343 28197430 -168998002 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 800 664 313 89 74 chr1 28197477 28197528 -168997904 - B4A SINE B4 -18 274 229 2 800 218 29 59 0 chr1 28197528 28197562 -168997870 + (CATAT)n Simple_repeat Simple_repeat 2 37 0 2 800 664 313 89 74 chr1 28197562 28197779 -168997653 - B4A SINE B4 -64 228 2 2 800 486 157 0 0 chr1 28199576 28199678 -168995754 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 800 349 104 0 0 chr1 28199710 28199758 -168995674 + HAL1-3A_ME LINE L1 1975 2022 -836 2 800 861 289 64 107 chr1 28200815 28200997 -168994435 - MTD LTR MaLR -19 400 242 2 800 186 43 0 0 chr1 28200997 28201020 -168994412 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 800 949 92 6 6 chr1 28201020 28201184 -168994248 + (CA)n Simple_repeat Simple_repeat 1 165 0 2 800 861 289 64 107 chr1 28201184 28201392 -168994040 - MTD LTR MaLR -178 241 27 2 800 707 195 7 32 chr1 28202462 28202616 -168992816 + B1_Mur4 SINE Alu 1 150 0 2 800 198 0 0 0 chr1 28203518 28203540 -168991892 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 800 1056 31 0 0 chr1 28203540 28203667 -168991765 + (GA)n Simple_repeat Simple_repeat 1 128 0 3 800 6571 72 2 17 chr1 28204162 28205053 -168990379 - L1Md_F2 LINE L1 -1 6581 5704 3 800 2303 87 0 0 chr1 28205043 28205342 -168990090 + L1Md_F2 LINE L1 5408 5706 -177 3 800 28 0 0 0 chr1 28206607 28206635 -168988797 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 390 272 59 7 chr1 28206672 28206822 -168988610 - B3 SINE B2 -36 162 8 3 800 1748 157 61 9 chr1 28207693 28208020 -168987412 + RLTR15 LTR ERVK 3 346 -13 3 800 594 252 8 16 chr1 28208386 28208515 -168986917 + B1_Mur4 SINE Alu 1 128 -22 3 800 216 67 0 0 chr1 28208803 28208833 -168986599 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 800 1560 241 44 32 chr1 28208894 28209136 -168986296 - Lx5 LINE L1 -3 7047 6806 3 800 531 31 0 0 chr1 28209136 28209201 -168986231 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 3 800 1560 241 44 32 chr1 28209201 28209391 -168986041 - Lx5 LINE L1 -245 6805 6610 3 800 402 270 139 0 chr1 28209425 28209540 -168985892 - B1_Mus2 SINE Alu -14 133 3 3 800 539 347 35 16 chr1 28209696 28209951 -168985481 - Lx9 LINE L1 -888 6756 6497 3 800 547 190 0 14 chr1 28210016 28210155 -168985277 + (TA)n Simple_repeat Simple_repeat 1 137 0 3 800 225 292 63 80 chr1 28210173 28210348 -168985084 - Lx9 LINE L1 -566 7078 6907 3 800 351 345 11 17 chr1 28210419 28210593 -168984839 + Lx9 LINE L1 6764 6936 -708 3 800 330 98 0 0 chr1 28210639 28210690 -168984742 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 800 322 154 77 0 chr1 28210989 28211054 -168984378 + RMER4A LTR ERVK 3 72 -513 3 800 29726 110 21 3 chr1 28211075 28217305 -168978127 - L1_Mus1 LINE L1 0 6567 228 3 800 1067 197 10 5 chr1 28217415 28217609 -168977823 + RMER4A LTR ERVK 250 444 -22 3 800 21 36 0 0 chr1 28217857 28217885 -168977547 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 1052 270 46 132 chr1 28218591 28219052 -168976380 + RLTR23 LTR ERV1 10 430 0 3 800 618 149 0 0 chr1 28220250 28220384 -168975048 + (TC)n Simple_repeat Simple_repeat 1 134 0 3 800 315 0 0 0 chr1 28220384 28220419 -168975013 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 800 563 312 50 0 chr1 28220420 28220561 -168974871 - B3A SINE B2 -46 152 5 3 800 2124 175 122 11 chr1 28220875 28221349 -168974083 - RLTR11A2 LTR ERVK 0 527 1 3 800 204 67 0 0 chr1 28221361 28221391 -168974041 + (ATG)n Simple_repeat Simple_repeat 2 31 0 3 800 29 28 0 0 chr1 28221448 28221484 -168973948 + AT_rich Low_complexity Low_complexity 1 36 0 3 800 218 161 79 18 chr1 28221610 28221724 -168973708 + (TA)n Simple_repeat Simple_repeat 2 122 0 3 800 375 23 0 0 chr1 28221725 28221769 -168973663 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 800 482 369 39 29 chr1 28221918 28222197 -168973235 - B4A SINE B4 0 292 11 3 800 423 239 72 18 chr1 28223240 28223389 -168972043 + Lx3B LINE L1 6834 7009 0 3 800 574 259 22 34 chr1 28224124 28224369 -168971063 - ORR1D1 LTR MaLR -142 242 5 3 800 28 79 0 0 chr1 28224432 28224495 -168970937 + AT_rich Low_complexity Low_complexity 1 63 0 3 800 927 123 12 6 chr1 28224701 28224865 -168970567 + (GGAGA)n Simple_repeat Simple_repeat 3 167 0 3 800 468 0 0 0 chr1 28224874 28224926 -168970506 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 800 546 306 11 16 chr1 28224949 28225135 -168970297 + MTEa LTR MaLR 192 376 -3 3 800 249 250 16 0 chr1 28225392 28225456 -168969976 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 800 312 366 127 33 chr1 28225885 28226216 -168969216 + MLT1A0 LTR MaLR 4 365 0 3 800 630 282 33 9 chr1 28226879 28227090 -168968342 - B3 SINE B2 0 216 1 3 800 1267 273 31 26 chr1 28227154 28227579 -168967853 + Lx7 LINE L1 5893 6319 -1377 3 800 233 89 22 0 chr1 28227584 28227629 -168967803 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 3 800 233 241 152 0 chr1 28227632 28227711 -168967721 + Lx6 LINE L1 6322 6412 -1048 3 800 529 160 11 0 chr1 28227714 28227808 -168967624 - RMER6C LTR ERVK 0 690 596 3 800 2334 113 8 33 chr1 28227808 28228174 -168967258 - IAPEY2_LTR LTR ERVK 0 357 1 3 800 5330 101 8 8 chr1 28228176 28228952 -168966480 - IAPEy-int LTR ERVK -3 7510 6735 3 800 3472 81 0 2 chr1 28228941 28229397 -168966035 - IAPEy-int LTR ERVK -1366 6215 5761 3 800 3192 102 0 16 chr1 28229388 28229834 -168965598 - IAPEy-int LTR ERVK -1939 5642 5204 3 800 586 71 47 66 chr1 28230084 28230190 -168965242 - IAPEy-int LTR ERVK -2911 4670 4567 3 800 409 89 0 0 chr1 28230189 28230245 -168965187 - IAPEy-int LTR ERVK -3784 3622 3567 3 800 658 202 0 0 chr1 28230271 28230390 -168965042 - IAPEy-int LTR ERVK -4653 2753 2635 3 800 277 291 0 55 chr1 28230402 28230493 -168964939 - IAPEy-int LTR ERVK -4867 2539 2454 3 800 475 221 88 0 chr1 28230506 28230619 -168964813 - RMER16-int LTR ERVK -5077 1060 938 3 800 1625 194 219 36 chr1 28230624 28231105 -168964327 - RMER16-int LTR ERVK -4587 819 251 3 800 936 123 70 31 chr1 28231217 28231580 -168963852 - IAPEY3-int LTR ERVK -6629 952 409 3 800 1936 171 29 18 chr1 28231990 28232407 -168963025 - IAPEY3-int LTR ERVK -7059 454 1 3 800 1300 146 13 9 chr1 28232407 28232644 -168962788 - IAPEY2_LTR LTR ERVK -2 355 103 3 800 1794 189 108 46 chr1 28232659 28232901 -168962531 - RMER6C LTR ERVK -89 601 347 3 800 894 19 0 0 chr1 28232901 28233005 -168962427 + (TC)n Simple_repeat Simple_repeat 1 104 0 3 800 297 0 0 0 chr1 28233005 28233037 -168962395 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 800 1794 190 94 34 chr1 28233037 28233325 -168962107 - RMER6C LTR ERVK -344 346 1 3 800 232 179 0 0 chr1 28233350 28233389 -168962043 + Lx6 LINE L1 6467 6505 -955 3 800 441 282 17 93 chr1 28233407 28233708 -168961724 + Lx7 LINE L1 7419 7696 0 3 800 3009 113 15 15 chr1 28233891 28234365 -168961067 - L1_Mus2 LINE L1 -312 5571 5098 3 800 7301 97 4 0 chr1 28234361 28235365 -168960067 + L1_Mus2 LINE L1 5588 6566 0 3 800 24 0 0 0 chr1 28235769 28235793 -168959639 + AT_rich Low_complexity Low_complexity 1 24 0 3 800 2042 117 7 3 chr1 28235793 28236102 -168959330 - Lx3A LINE L1 -8 6973 6664 3 800 26 74 0 0 chr1 28236584 28236638 -168958794 + AT_rich Low_complexity Low_complexity 1 54 0 3 800 275 65 0 21 chr1 28236722 28236769 -168958663 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 3 800 302 396 21 0 chr1 28236790 28236934 -168958498 - Lx8 LINE L1 -163 7310 7164 3 800 2065 122 9 14 chr1 28237496 28237845 -168957587 - L1_Mus3 LINE L1 -2 6636 6290 3 800 340 353 35 40 chr1 28237932 28238130 -168957302 - B3A SINE B2 0 198 2 3 800 646 278 36 31 chr1 28238225 28238448 -168956984 + Lx8 LINE L1 7157 7380 -93 3 800 314 123 18 0 chr1 28238462 28238519 -168956913 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 3 800 906 152 0 0 chr1 28238951 28239109 -168956323 + CT-rich Low_complexity Low_complexity 3 160 0 3 800 717 73 0 0 chr1 28239197 28239293 -168956139 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 800 375 317 85 85 chr1 28239584 28239832 -168955600 - B4A SINE B4 -2 290 43 3 800 369 227 22 84 chr1 28239860 28240038 -168955394 - Lx9 LINE L1 -2 7642 7476 3 800 1531 277 34 18 chr1 28240084 28240591 -168954841 - Lx9 LINE L1 -128 7516 7002 3 800 34 24 0 0 chr1 28240994 28241035 -168954397 + AT_rich Low_complexity Low_complexity 1 41 0 3 800 4060 221 73 34 chr1 28241386 28242132 -168953300 + RMER12 LTR ERVK 10 767 -555 3 800 243 103 0 0 chr1 28242132 28242171 -168953261 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 3 800 4060 221 73 34 chr1 28242171 28242275 -168953157 + RMER12 LTR ERVK 768 887 -435 3 800 411 83 0 0 chr1 28242275 28242335 -168953097 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 800 4060 239 104 51 chr1 28242335 28242714 -168952718 + RMER12 LTR ERVK 888 1171 -151 3 800 270 0 0 0 chr1 28242847 28242877 -168952555 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 800 1494 40 0 47 chr1 28242907 28243118 -168952314 - L1Md_F2 LINE L1 0 6582 6382 3 800 37749 31 0 0 chr1 28243126 28249739 -168945693 - L1Md_T LINE L1 0 6585 1 3 800 363 409 12 35 chr1 28249765 28249935 -168945497 + B3A SINE B2 17 182 -16 3 800 651 332 28 11 chr1 28249983 28250332 -168945100 + Lx9 LINE L1 6969 7334 -310 3 800 354 98 0 0 chr1 28250385 28250436 -168944996 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 800 5220 139 29 15 chr1 28250441 28251360 -168944072 - Lx3A LINE L1 -205 6776 5845 3 800 27 0 0 0 chr1 28252282 28252309 -168943123 + AT_rich Low_complexity Low_complexity 1 27 0 3 800 1011 261 106 3 chr1 28252662 28252946 -168942486 - MTD LTR MaLR 0 419 107 3 800 274 291 57 50 chr1 28252913 28253054 -168942378 - MTD-int LTR MaLR -6 1252 1111 3 800 263 250 0 0 chr1 28253068 28253128 -168942304 + B3 SINE B2 153 212 -4 3 800 1383 312 83 90 chr1 28253325 28254161 -168941271 - MTD-int LTR MaLR -316 942 1 3 800 581 309 94 104 chr1 28254161 28254542 -168940890 - MTD LTR MaLR 0 379 1 3 800 701 336 36 11 chr1 28254803 28255248 -168940184 + Lx9 LINE L1 7066 7521 -123 3 800 259 215 41 47 chr1 28255262 28255433 -168939999 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 3 800 258 200 0 59 chr1 28255459 28255613 -168939819 + (TTATA)n Simple_repeat Simple_repeat 1 144 0 3 800 2812 55 3 0 chr1 28255615 28255960 -168939472 + ORR1A1 LTR MaLR 1 346 0 3 800 393 22 0 0 chr1 28255983 28256029 -168939403 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 800 1003 96 9 6 chr1 28256391 28256547 -168938885 - L1_Mus4 LINE L1 -315 6269 6111 3 800 2546 121 12 5 chr1 28256551 28256950 -168938482 + L1_Mus4 LINE L1 6235 6636 0 3 800 373 275 8 99 chr1 28257551 28257672 -168937760 + RSINE1 SINE B4 9 118 -47 3 800 351 0 0 0 chr1 28257692 28257731 -168937701 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 800 966 83 0 0 chr1 28257731 28257863 -168937569 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 800 1003 347 62 29 chr1 28258020 28258614 -168936818 + Lx8 LINE L1 6707 7320 -153 3 800 863 105 16 0 chr1 28258629 28258753 -168936679 + RMER17B LTR ERVK 1 126 -832 3 800 315 0 0 0 chr1 28258757 28258792 -168936640 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 800 448 165 38 0 chr1 28258897 28258976 -168936456 + RMER6A LTR ERVK 652 733 -23 3 800 546 119 0 0 chr1 28258978 28259062 -168936370 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 800 1496 234 117 10 chr1 28259436 28259670 -168935762 + Lx9 LINE L1 7105 7340 -304 3 800 396 0 0 0 chr1 28259670 28259714 -168935718 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 800 1496 234 117 10 chr1 28259714 28259966 -168935466 + Lx9 LINE L1 7341 7643 -1 3 800 1086 51 0 0 chr1 28260027 28260164 -168935268 + (GAA)n Simple_repeat Simple_repeat 2 138 0 3 800 180 0 0 0 chr1 28260544 28260564 -168934868 + (A)n Simple_repeat Simple_repeat 1 20 0 3 800 328 357 65 57 chr1 28261483 28261909 -168933523 - L1MD LINE L1 -1724 4422 3999 3 800 351 0 0 0 chr1 28261909 28261948 -168933484 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 800 328 357 65 57 chr1 28261948 28262169 -168933263 - L1MD LINE L1 -2148 3998 3771 3 800 758 164 7 0 chr1 28262435 28262575 -168932857 + URR1A DNA MER1_type 81 221 -5 4 800 28 0 0 0 chr1 28263087 28263115 -168932317 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 383 405 12 4 chr1 28263157 28263412 -168932020 - RMER15 LTR ERVL -23 552 296 4 800 2590 281 55 18 chr1 28263555 28264393 -168931039 - Lx9 LINE L1 -463 7181 6313 4 800 878 118 72 14 chr1 28264617 28264755 -168930677 - B1_Mus2 SINE Alu 0 147 2 4 800 2198 162 61 174 chr1 28265694 28266239 -168929193 + ORR1B1-int LTR MaLR 1002 1963 0 4 800 1591 222 50 15 chr1 28266248 28266586 -168928846 + ORR1B1 LTR MaLR 43 392 -2 4 800 446 305 23 63 chr1 28266605 28266780 -168928652 + MT2A LTR ERVL 92 259 -274 4 800 461 97 21 31 chr1 28266803 28266899 -168928533 + (CCCCCT)n Simple_repeat Simple_repeat 4 98 0 4 800 3897 140 49 3 chr1 28266899 28267558 -168927874 - Lx3A LINE L1 -314 6667 5979 4 800 656 88 22 0 chr1 28267561 28267652 -168927780 + Lx3A LINE L1 6751 6843 -138 4 800 1925 153 34 0 chr1 28267654 28267974 -168927458 + Lx3A LINE L1 6648 6978 -3 4 800 23 33 0 0 chr1 28268444 28268474 -168926958 + AT_rich Low_complexity Low_complexity 1 30 0 4 800 492 320 71 5 chr1 28268593 28268791 -168926641 - ID_B1 SINE B4 -12 212 2 4 800 294 288 0 0 chr1 28270164 28270230 -168925202 + ID_B1 SINE B4 158 223 -1 4 800 230 270 32 63 chr1 28271393 28271488 -168923944 - MER5C1 DNA MER1_type -23 240 149 4 800 624 106 0 0 chr1 28271922 28272016 -168923416 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 800 406 332 90 43 chr1 28272075 28272308 -168923124 - B4A SINE B4 -48 244 1 4 800 504 32 0 0 chr1 28272743 28272805 -168922627 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 800 432 0 0 0 chr1 28273374 28273422 -168922010 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 800 672 13 0 0 chr1 28273422 28273498 -168921934 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 800 233 179 157 82 chr1 28273812 28273946 -168921486 + Lx9 LINE L1 7494 7637 -7 4 800 229 129 65 0 chr1 28274777 28274839 -168920593 + (TTTG)n Simple_repeat Simple_repeat 4 69 0 4 800 1717 324 79 31 chr1 28275787 28276732 -168918700 - Lx8 LINE L1 -237 7236 6246 4 800 235 250 71 44 chr1 28276881 28276994 -168918438 - Lx8 LINE L1 -1545 5928 5813 4 800 340 282 87 51 chr1 28278237 28278375 -168917057 - B3 SINE B2 -6 210 68 4 800 214 299 0 15 chr1 28278582 28278650 -168916782 - ID4_ SINE ID -6 77 11 4 800 369 0 0 0 chr1 28281240 28281281 -168914151 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 800 4297 78 0 15 chr1 28281828 28282463 -168912969 - L1Md_F2 LINE L1 0 6582 5993 4 800 28 86 0 0 chr1 28282501 28282571 -168912861 + AT_rich Low_complexity Low_complexity 1 70 0 4 800 201 39 0 0 chr1 28282674 28282700 -168912732 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 800 21 36 0 0 chr1 28282742 28282770 -168912662 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 236 239 8 107 chr1 28283825 28283947 -168911485 - L1M5 LINE L1 -328 5851 5742 4 800 234 0 0 0 chr1 28283980 28284006 -168911426 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 800 232 364 11 0 chr1 28284012 28284100 -168911332 - PB1 SINE Alu -19 108 20 4 800 1160 55 7 0 chr1 28284204 28284350 -168911082 - B1_Mm SINE Alu 0 147 1 4 800 244 362 17 33 chr1 28284749 28284869 -168910563 + B1_Mm SINE Alu 1 118 -29 4 800 24 85 0 0 chr1 28285144 28285203 -168910229 + AT_rich Low_complexity Low_complexity 1 59 0 4 800 310 362 63 50 chr1 28285234 28285455 -168909977 + MTE2b LTR MaLR 1 224 -155 4 800 26 82 0 0 chr1 28285837 28285898 -168909534 + AT_rich Low_complexity Low_complexity 1 61 0 4 800 311 291 164 42 chr1 28286063 28286228 -168909204 - MTE2b LTR MaLR 0 379 195 4 800 1776 149 68 8 chr1 28286274 28286630 -168908802 - Lx LINE L1 -14 6568 6170 4 800 334 278 207 15 chr1 28286631 28286766 -168908666 - MTE2b LTR MaLR -217 162 2 4 800 312 27 0 0 chr1 28287120 28287157 -168908275 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 4 800 258 253 133 33 chr1 28287161 28287251 -168908181 - MLT1A LTR MaLR -63 345 243 4 800 1087 64 0 0 chr1 28287558 28287699 -168907733 + B1_Mus2 SINE Alu 1 141 -6 4 800 330 26 0 0 chr1 28287701 28287740 -168907692 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 800 231 327 139 23 chr1 28287821 28288087 -168907345 + L1M5 LINE L1 5368 5664 -500 4 800 368 180 0 43 chr1 28288652 28288768 -168906664 + (CATATA)n Simple_repeat Simple_repeat 5 115 0 4 800 450 332 34 21 chr1 28288787 28289125 -168906307 - L1MA4 LINE L1 -365 5932 5578 4 800 4146 194 84 38 chr1 28289370 28289877 -168905555 + Lx5 LINE L1 4737 5259 -618 4 800 180 0 0 0 chr1 28289877 28289897 -168905535 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 800 4146 194 84 38 chr1 28289897 28290080 -168905352 + Lx5 LINE L1 5260 5441 -436 4 800 1103 82 7 0 chr1 28290080 28290227 -168905205 + B1_Mus1 SINE Alu 1 148 0 4 800 4660 227 67 19 chr1 28290227 28291644 -168903788 + Lx5 LINE L1 5442 7050 0 4 800 27 62 0 0 chr1 28291703 28291751 -168903681 + AT_rich Low_complexity Low_complexity 1 48 0 4 800 862 312 41 52 chr1 28291848 28292236 -168903196 - Lx9 LINE L1 -152 7492 7109 4 800 459 107 0 0 chr1 28292284 28292359 -168903073 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 800 866 111 221 32 chr1 28292397 28292555 -168902877 + B2_Mm2 SINE B2 1 188 -7 4 800 491 365 14 9 chr1 28292575 28292791 -168902641 - Lx7 LINE L1 -385 7311 7095 4 800 228 274 177 35 chr1 28292839 28293156 -168902276 - L1MA4 LINE L1 -1087 5056 4695 4 800 414 0 0 0 chr1 28293313 28293359 -168902073 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 800 367 269 156 35 chr1 28293395 28293626 -168901806 - L1MA4 LINE L1 -1481 4662 4404 4 800 22 35 0 0 chr1 28293764 28293793 -168901639 + AT_rich Low_complexity Low_complexity 1 29 0 4 800 230 379 77 77 chr1 28294479 28294662 -168900770 - B3A SINE B2 -12 186 4 4 800 21 57 0 0 chr1 28294791 28294826 -168900606 + AT_rich Low_complexity Low_complexity 1 35 0 4 800 400 268 15 0 chr1 28295778 28295917 -168899515 - RMER12 LTR ERVK -428 894 765 4 800 25 0 0 0 chr1 28296518 28296543 -168898889 + AT_rich Low_complexity Low_complexity 1 25 0 4 800 494 118 0 13 chr1 28296577 28296654 -168898778 - Lx2 LINE L1 -628 6369 6294 4 800 2655 168 71 8 chr1 28296656 28297160 -168898272 + Lx2 LINE L1 6447 6982 -15 4 800 261 0 0 0 chr1 28297403 28297432 -168898000 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 800 1080 83 7 0 chr1 28299124 28299269 -168896163 - B1_Mus1 SINE Alu -1 147 2 4 800 929 206 58 70 chr1 28299394 28299738 -168895694 + Lx9 LINE L1 7299 7638 -6 4 800 385 257 54 75 chr1 28299983 28300130 -168895302 + B1F SINE Alu 6 149 0 4 800 482 204 9 0 chr1 28300132 28300245 -168895187 + GA-rich Low_complexity Low_complexity 4 117 0 4 800 1256 45 0 22 chr1 28300246 28300426 -168895006 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 4 800 21 0 0 0 chr1 28300558 28300579 -168894853 + AT_rich Low_complexity Low_complexity 1 21 0 4 800 479 379 75 14 chr1 28300707 28300921 -168894511 + B4 SINE B4 64 290 -2 4 800 249 119 0 0 chr1 28300939 28300981 -168894451 + (CAT)n Simple_repeat Simple_repeat 1 42 0 4 800 1882 126 14 0 chr1 28301867 28302161 -168893271 - Lx3_Mus LINE L1 -69 6940 6643 4 800 201 74 0 0 chr1 28303886 28303913 -168891519 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 800 575 349 115 25 chr1 28303921 28304727 -168890705 + Lx8 LINE L1 6221 7112 -361 4 800 297 0 0 0 chr1 28304727 28304760 -168890672 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 800 532 342 101 41 chr1 28304760 28304977 -168890455 + Lx8 LINE L1 7113 7349 -124 4 800 252 59 0 0 chr1 28305125 28305159 -168890273 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 800 280 305 0 24 chr1 28305291 28305379 -168890053 + MT2B2 LTR ERVL 253 322 -279 4 800 2451 34 2 259 chr1 28305426 28305951 -168889481 - RLTR10 LTR ERVK 0 390 1 4 800 16307 32 2 31 chr1 28305953 28307994 -168887438 - RLTR10-int LTR ERVK -3 1984 3 4 800 2441 36 2 259 chr1 28307996 28308521 -168886911 - RLTR10 LTR ERVK 0 390 1 4 800 715 241 48 6 chr1 28308523 28308690 -168886742 + MT2B2 LTR ERVL 362 535 -49 4 800 460 273 78 0 chr1 28309525 28309653 -168885779 + B1_Mur3 SINE Alu 5 142 -7 4 800 24 0 0 0 chr1 28309653 28309677 -168885755 + AT_rich Low_complexity Low_complexity 1 24 0 4 800 21 36 0 0 chr1 28309844 28309872 -168885560 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 440 361 81 58 chr1 28310045 28310354 -168885078 - MTD LTR MaLR -15 404 89 4 800 224 193 35 0 chr1 28310861 28310918 -168884514 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 800 229 388 20 39 chr1 28310925 28311027 -168884405 - PB1D10 SINE Alu -7 110 11 4 801 33 66 0 0 chr1 28311945 28312006 -168883426 + AT_rich Low_complexity Low_complexity 1 61 0 4 801 3560 152 3 10 chr1 28312148 28312794 -168882638 + L1_Mus4 LINE L1 6018 6636 0 4 801 977 310 32 16 chr1 28312929 28313333 -168882099 - Lx7 LINE L1 -1727 5969 5587 4 801 861 62 0 0 chr1 28313354 28313466 -168881966 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 801 259 234 0 0 chr1 28313480 28313545 -168881887 + L1_Mur3 LINE L1 4218 4282 -1595 4 801 3716 183 29 29 chr1 28313618 28314345 -168881087 + Lx2B LINE L1 6244 6970 -30 4 801 183 80 0 0 chr1 28315522 28315547 -168879885 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 4 801 32025 85 15 7 chr1 28316045 28320598 -168874834 - L1Md_F2 LINE L1 -2 6580 1987 4 801 260 27 27 0 chr1 28320598 28320635 -168874797 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 801 32025 129 58 29 chr1 28320635 28322122 -168873310 - L1Md_F2 LINE L1 -3897 1986 450 4 801 6741 84 32 13 chr1 28323262 28324452 -168870980 + L1_Mus2 LINE L1 5359 6565 -1 4 801 230 363 86 38 chr1 28324985 28325277 -168870155 + Arthur1 DNA Tip100 368 673 -3274 4 801 405 0 0 0 chr1 28325805 28325850 -168869582 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 4 801 1187 237 36 29 chr1 28325859 28326203 -168869229 + Lx6 LINE L1 5726 6060 -1400 4 801 579 51 0 0 chr1 28326288 28326367 -168869065 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 801 25 0 0 0 chr1 28326569 28326594 -168868838 + AT_rich Low_complexity Low_complexity 1 25 0 4 801 21 0 0 0 chr1 28327779 28327800 -168867632 + AT_rich Low_complexity Low_complexity 1 21 0 4 801 1295 241 71 86 chr1 28327820 28328355 -168867077 + RLTR24 LTR ERV1 3 529 0 4 801 1373 265 45 35 chr1 28328576 28328979 -168866453 - Lx6 LINE L1 -9 7451 7045 5 801 3058 98 5 7 chr1 28328975 28329415 -168866017 + L1_Mus2 LINE L1 5804 6242 -324 5 801 775 222 51 5 chr1 28329428 28329623 -168865809 - Lx6 LINE L1 -786 6674 6471 5 801 1701 204 39 2 chr1 28329626 28330058 -168865374 + L1_Mur3 LINE L1 3001 3448 -2432 5 801 333 236 41 58 chr1 28330873 28331044 -168864388 + Lx9 LINE L1 7476 7643 -1 5 801 1743 199 101 3 chr1 28331511 28331888 -168863544 + L1Md_F LINE L1 580 993 -5623 5 801 2305 148 57 10 chr1 28331888 28332341 -168863091 + MusHAL1 LINE L1 358 837 -1875 5 801 876 107 50 0 chr1 28332341 28332481 -168862951 + B1_Mus2 SINE Alu 1 147 0 5 801 2305 148 57 10 chr1 28332481 28332532 -168862900 + MusHAL1 LINE L1 838 886 -1826 5 801 692 150 8 0 chr1 28332532 28332652 -168862780 + L1Md_F LINE L1 4026 4146 -1737 5 801 2495 24 10 0 chr1 28332652 28332946 -168862486 + MERVL-int LTR ERVL 2355 2651 -2834 5 801 8035 118 18 34 chr1 28332947 28334289 -168861143 + L1Md_F LINE L1 4147 5467 -416 5 801 4553 95 5 2 chr1 28334293 28334926 -168860506 + L1_Mus1 LINE L1 5933 6567 0 5 801 21 0 0 0 chr1 28334929 28334950 -168860482 + AT_rich Low_complexity Low_complexity 1 21 0 5 801 365 328 58 62 chr1 28335360 28335472 -168859960 + L1MC3 LINE L1 6754 6870 -915 5 801 245 98 24 0 chr1 28335472 28335513 -168859919 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 801 365 328 58 62 chr1 28335513 28335692 -168859740 + L1MC3 LINE L1 6871 7044 -741 5 801 463 327 103 13 chr1 28335828 28336138 -168859294 + L1MC3 LINE L1 7109 7446 -339 5 801 217 295 0 0 chr1 28336335 28336396 -168859036 + (CATA)n Simple_repeat Simple_repeat 3 63 0 5 801 266 353 73 26 chr1 28336788 28336980 -168858452 + MIR SINE MIR 34 234 -28 5 801 612 152 23 0 chr1 28337176 28337308 -168858124 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 801 208 159 14 68 chr1 28337434 28337508 -168857924 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 801 314 322 82 23 chr1 28337521 28337826 -168857606 - L1MA4 LINE L1 -385 5915 5593 5 801 4606 113 9 0 chr1 28338093 28338783 -168856649 - L1_Mus3 LINE L1 0 6638 5943 5 801 6561 133 36 14 chr1 28338783 28339891 -168855541 + L1_Mus3 LINE L1 4729 5860 -23 5 801 421 58 0 0 chr1 28339891 28339943 -168855489 + Lx LINE L1 5832 5883 -771 5 801 787 343 62 8 chr1 28340176 28340532 -168854900 + MTE2b LTR MaLR 1 375 -4 5 801 29 70 0 0 chr1 28340682 28340739 -168854693 + AT_rich Low_complexity Low_complexity 1 57 0 5 801 392 0 21 0 chr1 28340929 28340977 -168854455 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 801 7963 52 2 0 chr1 28340989 28342164 -168853268 - L1Md_F2 LINE L1 -12 6570 5394 5 801 326 324 29 25 chr1 28342189 28342651 -168852781 - L1M3 LINE L1 -2959 3184 2723 5 801 523 267 0 0 chr1 28342686 28342806 -168852626 + URR1B DNA MER1_type 30 149 -76 5 801 3070 213 43 14 chr1 28343399 28344095 -168851337 + RMER6D LTR ERVK 1 716 -4 5 801 309 351 0 0 chr1 28344332 28344426 -168851006 - Lx6 LINE L1 -73 7387 7294 5 801 35405 35 1 0 chr1 28344429 28350694 -168844738 + L1Md_T LINE L1 1 5589 -297 5 801 8938 7 0 0 chr1 28350694 28351690 -168843742 + L1Md_T LINE L1 5590 6585 0 5 801 2139 268 46 28 chr1 28351694 28352236 -168843196 - Lx6 LINE L1 -141 7555 6728 5 801 483 60 0 0 chr1 28352236 28352303 -168843129 + (TAG)n Simple_repeat Simple_repeat 2 68 0 5 801 2139 268 46 30 chr1 28352303 28352426 -168843006 - Lx6 LINE L1 -733 6727 6611 5 801 3164 91 29 2 chr1 28352669 28353122 -168842310 - L1_Mus2 LINE L1 0 6566 6102 5 801 441 0 0 0 chr1 28353566 28353615 -168841817 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 801 495 0 0 0 chr1 28353615 28353669 -168841763 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 5 801 21 0 0 0 chr1 28353993 28354014 -168841418 + AT_rich Low_complexity Low_complexity 1 21 0 5 801 277 413 45 59 chr1 28354762 28355050 -168840382 + MER70B LTR ERVL 1 284 -294 5 801 27 100 0 0 chr1 28355368 28355458 -168839974 + AT_rich Low_complexity Low_complexity 1 90 0 5 801 503 146 0 21 chr1 28357264 28357404 -168838028 + T-rich Low_complexity Low_complexity 1 137 0 5 801 189 271 123 61 chr1 28357616 28357730 -168837702 - L3 LINE CR1 -475 4014 3894 5 801 3113 150 28 17 chr1 28358618 28359152 -168836280 - Lx3C LINE L1 -8 6968 6429 5 801 21 71 0 0 chr1 28359396 28359438 -168835994 + AT_rich Low_complexity Low_complexity 1 42 0 5 801 34884 38 17 8 chr1 28359630 28364736 -168830696 + L1Md_T LINE L1 441 5586 -297 5 801 8131 44 2 0 chr1 28364736 28365730 -168829702 + L1Md_T LINE L1 5587 6582 0 5 801 450 239 54 47 chr1 28365828 28365977 -168829455 - Lx7 LINE L1 -410 7286 7137 5 801 292 331 69 24 chr1 28366743 28367141 -168828291 + L1_Rod LINE L1 2295 2703 -3177 5 801 1377 297 68 63 chr1 28367357 28367989 -168827443 - MTC-int LTR MaLR -597 983 35 5 801 450 0 0 0 chr1 28367990 28368040 -168827392 + (TAA)n Simple_repeat Simple_repeat 1 50 0 5 801 1317 259 63 29 chr1 28368079 28368406 -168827026 - MTD LTR MaLR -13 406 62 5 801 186 43 0 0 chr1 28368406 28368429 -168827003 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 801 1317 259 63 29 chr1 28368429 28368483 -168826949 - MTD LTR MaLR -358 61 12 5 801 655 344 55 10 chr1 28368687 28368995 -168826437 - Lx8 LINE L1 -306 7167 6846 5 801 309 244 51 0 chr1 28369044 28369122 -168826310 + Lx7 LINE L1 6364 6445 -1251 5 801 314 23 23 0 chr1 28369123 28369166 -168826266 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 801 275 271 0 41 chr1 28369195 28369268 -168826164 + Lx8 LINE L1 6462 6531 -942 5 801 25 31 0 0 chr1 28369443 28369475 -168825957 + AT_rich Low_complexity Low_complexity 1 32 0 5 801 2380 168 60 55 chr1 28370033 28370581 -168824851 - L1_Mur2 LINE L1 -1322 4555 4005 5 801 235 200 40 0 chr1 28370591 28370641 -168824791 + Lx5 LINE L1 6827 6878 -172 5 801 492 117 0 0 chr1 28370643 28370720 -168824712 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 801 2171 244 40 27 chr1 28370767 28371319 -168824113 + RLTR20B2 LTR ERVK 2 560 0 5 801 180 125 0 0 chr1 28371587 28371619 -168823813 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 5 801 24 85 0 0 chr1 28372309 28372368 -168823064 + AT_rich Low_complexity Low_complexity 1 59 0 5 801 951 202 52 0 chr1 28372710 28372923 -168822509 - L1MA5 LINE L1 -274 6026 5803 5 801 900 351 70 45 chr1 28373284 28374128 -168821304 + Lx8 LINE L1 6549 7413 -60 5 801 291 93 0 0 chr1 28374515 28374558 -168820874 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 5 801 201 158 0 0 chr1 28376883 28376921 -168818511 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 801 366 132 0 0 chr1 28377528 28377604 -168817828 + (A)n Simple_repeat Simple_repeat 1 76 0 5 801 3865 193 78 38 chr1 28377615 28378559 -168816873 + RLTR13C1 LTR ERVK 2 983 0 5 801 666 82 0 0 chr1 28378751 28378849 -168816583 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 801 28 29 0 0 chr1 28379255 28379290 -168816142 + AT_rich Low_complexity Low_complexity 1 35 0 5 801 207 100 0 0 chr1 28379290 28379320 -168816112 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 801 1562 296 91 63 chr1 28379324 28380115 -168815317 - Lx9 LINE L1 -249 7395 6583 5 801 21 71 0 0 chr1 28380513 28380555 -168814877 + AT_rich Low_complexity Low_complexity 1 42 0 5 801 317 336 83 8 chr1 28381047 28381179 -168814253 + B4A SINE B4 4 145 -147 5 801 24 32 0 0 chr1 28381939 28381970 -168813462 + AT_rich Low_complexity Low_complexity 1 31 0 5 801 671 288 50 13 chr1 28383575 28383892 -168811540 + Lx9 LINE L1 7316 7644 0 5 801 979 93 58 0 chr1 28384554 28384693 -168810739 + B1_Mus2 SINE Alu 1 147 0 5 801 738 166 0 0 chr1 28385206 28385381 -168810051 + GA-rich Low_complexity Low_complexity 2 176 0 5 801 180 0 0 0 chr1 28386321 28386341 -168809091 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 801 229 308 0 0 chr1 28386965 28387030 -168808402 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 801 188 300 47 155 chr1 28387259 28387472 -168807960 - L4 LINE RTE -535 1494 1305 5 801 288 320 19 10 chr1 28389994 28390098 -168805334 - ID_B1 SINE B4 -66 158 54 5 801 2349 93 11 6 chr1 28391551 28391898 -168803534 - L1_Mus3 LINE L1 -1 6637 6289 5 801 238 120 35 138 chr1 28392027 28392054 -168803378 + MTC-int LTR MaLR 1059 1083 -175 5 801 1568 194 3 6 chr1 28392054 28392381 -168803051 - Lx2 LINE L1 0 6997 6672 5 801 238 120 35 138 chr1 28392381 28392440 -168802992 + MTC-int LTR MaLR 1084 1136 -122 5 801 297 326 0 11 chr1 28392514 28392604 -168802828 - Lx7 LINE L1 -358 7338 7250 5 801 1176 266 82 82 chr1 28392647 28393282 -168802150 - L1_Mur3 LINE L1 -623 5257 4623 5 801 473 241 34 16 chr1 28393433 28393576 -168801856 + MTC-int LTR MaLR 1143 1258 0 5 801 467 261 139 36 chr1 28393576 28393798 -168801634 + MTC LTR MaLR 1 244 -175 5 801 186 118 0 0 chr1 28393811 28393845 -168801587 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 801 21 0 0 0 chr1 28394053 28394074 -168801358 + AT_rich Low_complexity Low_complexity 1 21 0 5 801 474 88 0 0 chr1 28394480 28394548 -168800884 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 801 290 79 0 0 chr1 28396377 28396415 -168799017 + B1_Mus2 SINE Alu 1 38 -109 5 801 2363 74 80 3 chr1 28396423 28396762 -168798670 - Lx3_Mus LINE L1 0 7009 6645 5 801 24 53 0 0 chr1 28397362 28397400 -168798032 + AT_rich Low_complexity Low_complexity 1 38 0 5 801 1462 60 38 0 chr1 28398022 28398207 -168797225 + B2_Mm1a SINE B2 1 192 -1 5 801 2198 222 149 13 chr1 28399555 28400157 -168795275 + Lx5 LINE L1 6364 7047 -3 5 801 1989 113 67 166 chr1 28401024 28401448 -168793984 + RLTR23 LTR ERV1 1 383 -47 5 801 3339 43 2 0 chr1 28401448 28401843 -168793589 - MTA_Mm LTR MaLR 0 396 1 5 801 1989 113 67 166 chr1 28401843 28401895 -168793537 + RLTR23 LTR ERV1 384 430 0 5 801 230 190 0 33 chr1 28402342 28402402 -168793030 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 5 801 256 252 0 33 chr1 28402429 28402540 -168792892 - Lx2B LINE L1 -32 7026 6872 5 801 232 170 56 19 chr1 28402534 28402588 -168792844 + Lx5 LINE L1 6467 6522 -454 5 801 1106 82 0 39 chr1 28402603 28402756 -168792676 - B1_Mus2 SINE Alu 0 147 1 5 801 600 111 0 0 chr1 28403150 28403249 -168792183 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 801 739 161 0 8 chr1 28403645 28403776 -168791656 - L1Md_F2 LINE L1 -940 6057 5928 5 801 2940 126 12 21 chr1 28403780 28404266 -168791166 + Lx LINE L1 6160 6641 -13 6 801 243 88 0 0 chr1 28404319 28404353 -168791079 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 6 801 922 162 6 6 chr1 28404584 28404764 -168790668 + GA-rich Low_complexity Low_complexity 1 180 0 6 801 275 49 48 32 chr1 28404777 28404840 -168790592 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 6 801 204 280 13 0 chr1 28405132 28405207 -168790225 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 6 801 23 0 0 0 chr1 28405534 28405557 -168789875 + AT_rich Low_complexity Low_complexity 1 23 0 6 801 2183 207 79 109 chr1 28406394 28406735 -168788697 + RMER19C LTR ERVK 1 347 -264 6 801 2547 52 61 0 chr1 28406735 28407061 -168788371 - ORR1A1 LTR MaLR 0 346 1 6 801 2183 207 79 109 chr1 28407061 28407349 -168788083 + RMER19C LTR ERVK 348 611 0 6 801 32453 111 19 34 chr1 28407354 28414154 -168781278 - L1Md_F2 LINE L1 0 6582 273 5 801 290 304 29 34 chr1 28414161 28414365 -168781067 - L1_Mur3 LINE L1 -570 5310 5108 6 801 3108 194 53 6 chr1 28414363 28415007 -168780425 + Lx4B LINE L1 6307 6980 -78 6 801 310 53 0 0 chr1 28415049 28415087 -168780345 + (GAAA)n Simple_repeat Simple_repeat 1 38 0 6 801 863 135 0 27 chr1 28415087 28415270 -168780162 + GA-rich Low_complexity Low_complexity 3 180 0 6 801 924 146 0 0 chr1 28415246 28415424 -168780008 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 801 441 313 17 6 chr1 28415467 28415647 -168779785 + Lx7 LINE L1 5794 5975 -1721 6 801 477 172 0 0 chr1 28416563 28416656 -168778776 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 801 33 56 0 0 chr1 28416992 28417046 -168778386 + AT_rich Low_complexity Low_complexity 1 54 0 6 801 4775 118 99 16 chr1 28417290 28418064 -168777368 - L1_Mus3 LINE L1 -8 6630 5792 6 801 3690 47 0 0 chr1 28418064 28418513 -168776919 + L1Md_F2 LINE L1 5138 5586 -297 6 801 7954 57 1 0 chr1 28418514 28419508 -168775924 + L1Md_F2 LINE L1 5588 6582 0 6 801 14705 145 17 26 chr1 28419534 28422183 -168773249 - L1_Mm LINE L1 -78 5805 3183 6 801 267 331 80 51 chr1 28422218 28422393 -168773039 - B3A SINE B2 -16 182 3 6 801 396 0 0 0 chr1 28423274 28423318 -168772114 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 801 21 0 0 0 chr1 28424210 28424231 -168771201 + AT_rich Low_complexity Low_complexity 1 21 0 6 801 22 35 0 0 chr1 28424305 28424334 -168771098 + AT_rich Low_complexity Low_complexity 1 29 0 6 801 29 70 0 0 chr1 28424411 28424468 -168770964 + AT_rich Low_complexity Low_complexity 1 57 0 6 801 1021 67 30 0 chr1 28424523 28424658 -168770774 + B1_Mm SINE Alu 4 142 -5 6 801 951 26 0 0 chr1 28424664 28424778 -168770654 + (GAA)n Simple_repeat Simple_repeat 2 115 0 6 801 285 75 0 0 chr1 28424830 28424870 -168770562 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 801 323 316 33 35 chr1 28424944 28425176 -168770256 + L1MD LINE L1 2338 2570 -3644 6 801 723 288 47 0 chr1 28425380 28425595 -168769837 - URR1B DNA MER1_type 0 225 1 6 801 1128 186 19 0 chr1 28426311 28426526 -168768906 - L1_Mur1 LINE L1 -708 5178 4960 6 801 402 21 0 0 chr1 28426561 28426608 -168768824 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 801 28 48 0 0 chr1 28427026 28427068 -168768364 + AT_rich Low_complexity Low_complexity 1 42 0 6 801 263 289 46 9 chr1 28427664 28427797 -168767635 + Lx9 LINE L1 7203 7376 -268 6 801 1611 257 54 34 chr1 28428039 28428575 -168766857 + Lx9 LINE L1 7088 7634 -10 6 801 295 225 11 111 chr1 28428758 28428848 -168766584 + RSINE1 SINE B4 85 165 0 6 801 23 0 0 0 chr1 28428995 28429018 -168766414 + AT_rich Low_complexity Low_complexity 1 23 0 6 801 2913 125 2 28 chr1 28429433 28429902 -168765530 - L1_Mm LINE L1 -844 5039 4583 6 801 400 187 68 18 chr1 28429899 28430019 -168765413 + L1_Mus2 LINE L1 6416 6589 -47 6 801 187 103 51 0 chr1 28430021 28430060 -168765372 + G-rich Low_complexity Low_complexity 4 44 0 6 801 416 154 42 8 chr1 28430060 28430178 -168765254 + L1_Mus3 LINE L1 6515 6636 -2 6 801 185 0 0 39 chr1 28431647 28431673 -168763759 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 801 240 59 0 0 chr1 28432023 28432057 -168763375 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 801 4043 152 58 22 chr1 28432155 28432841 -168762591 - RMER19A LTR ERVK 0 737 26 6 801 1637 36 0 0 chr1 28432841 28433034 -168762398 + B2_Mm1t SINE B2 1 193 0 6 801 4043 152 58 22 chr1 28433034 28433059 -168762373 - RMER19A LTR ERVK -712 25 1 6 801 259 304 147 35 chr1 28433549 28433896 -168761536 - Lx9 LINE L1 -1237 6407 6022 6 801 2382 286 48 5 chr1 28433892 28434571 -168760861 + Lx9 LINE L1 6793 7501 -143 6 801 180 0 0 0 chr1 28434571 28434591 -168760841 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 801 2382 286 48 5 chr1 28434591 28434605 -168760827 + Lx9 LINE L1 7502 7516 -128 6 801 756 65 0 0 chr1 28434605 28434712 -168760720 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 801 2382 286 48 5 chr1 28434712 28434826 -168760606 + Lx9 LINE L1 7517 7635 -9 6 801 1560 232 44 67 chr1 28435441 28435963 -168759469 - Charlie24 DNA MER1_type -257 2193 1684 6 801 227 229 9 111 chr1 28436638 28436746 -168758686 - RLTR19C LTR ERVK -385 121 25 6 801 7278 72 7 3 chr1 28438076 28439627 -168755805 - L1Md_F2 LINE L1 0 6582 5024 6 801 432 0 0 0 chr1 28439629 28439677 -168755755 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 801 237 167 0 0 chr1 28439681 28439717 -168755715 - U2 snRNA snRNA -152 36 1 6 801 516 247 124 19 chr1 28439810 28439971 -168755461 + MT2A LTR ERVL 1 178 -355 6 801 366 64 0 0 chr1 28440007 28440054 -168755378 - L1Md_F LINE L1 -5754 765 719 6 801 1412 72 0 0 chr1 28440051 28440231 -168755201 + L1Md_F2 LINE L1 5407 5586 -297 6 801 7142 87 8 5 chr1 28440235 28441215 -168754217 + L1Md_F2 LINE L1 5591 6573 -9 6 801 207 0 0 0 chr1 28441223 28441246 -168754186 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 801 2471 202 19 4 chr1 28441262 28441739 -168753693 + RLTR17 LTR ERVK 1 484 -208 6 801 2150 70 26 16 chr1 28441758 28442062 -168753370 - IAPLTR2b LTR ERVK -20 307 1 6 801 629 251 171 43 chr1 28442065 28442252 -168753180 + RLTR17 LTR ERVK 482 692 0 6 801 723 191 40 12 chr1 28442252 28442525 -168752907 + L1_Mur2 LINE L1 1072 1358 -4519 6 100 2465 242 63 49 chr1 28442516 28444026 -168751406 + Lx5 LINE L1 5211 6894 -566 6 802 2794 182 61 121 chr1 28444328 28445292 -168750140 + RMER17A2 LTR ERVK 1 906 0 6 802 1013 117 0 0 chr1 28445425 28445570 -168749862 + B1_Mus1 SINE Alu 1 145 -3 6 802 522 240 120 64 chr1 28445654 28445921 -168749511 - Lx9 LINE L1 -71 7573 7292 6 802 626 377 45 22 chr1 28445926 28446414 -168749018 - Lx8 LINE L1 -297 7176 6678 6 802 27 49 0 0 chr1 28446463 28446504 -168748928 + AT_rich Low_complexity Low_complexity 1 41 0 6 802 210 37 0 0 chr1 28446504 28446531 -168748901 + (TTA)n Simple_repeat Simple_repeat 1 27 0 6 802 8102 40 4 1 chr1 28446531 28447622 -168747810 - L1Md_F3 LINE L1 -26 6558 5465 6 802 225 94 0 0 chr1 28447832 28447864 -168747568 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 802 788 255 46 15 chr1 28447864 28448059 -168747373 - B3 SINE B2 -10 206 6 6 802 1181 317 44 26 chr1 28448063 28448520 -168746912 - Lx8 LINE L1 -769 6704 6240 6 802 225 0 0 0 chr1 28448917 28448942 -168746490 + (A)n Simple_repeat Simple_repeat 1 25 0 6 802 3000 86 95 2 chr1 28448942 28449372 -168746060 + L1_Mus1 LINE L1 6097 6566 -1 6 802 356 257 52 51 chr1 28449412 28449570 -168745862 - L1_Rod LINE L1 -2872 2975 2796 6 802 201 224 44 15 chr1 28449778 28449846 -168745586 + T-rich Low_complexity Low_complexity 1 70 0 6 802 31 44 0 0 chr1 28450378 28450423 -168745009 + AT_rich Low_complexity Low_complexity 1 45 0 6 802 219 290 43 14 chr1 28450497 28450567 -168744865 - B1F SINE Alu -9 140 69 6 802 2389 140 20 20 chr1 28450738 28451145 -168744287 - MTB_Mm LTR MaLR 0 407 1 6 802 884 202 171 62 chr1 28451260 28451629 -168743803 - RLTR9E LTR ERVK 0 409 1 6 802 577 181 64 21 chr1 28451629 28451770 -168743662 - MMETn-int LTR ERVK 0 4844 4698 6 802 679 217 151 5 chr1 28451770 28451988 -168743444 - RLTR13D6 LTR ERVK -461 441 192 6 802 6117 131 49 45 chr1 28451988 28452640 -168742792 - ETnERV2-int LTR ERVK -229 7177 6576 6 802 196 167 0 0 chr1 28452640 28452676 -168742756 - L2 LINE L2 -658 2761 2726 6 802 6117 131 49 45 chr1 28452676 28453059 -168742373 - ETnERV2-int LTR ERVK -229 6575 6221 6 802 4246 169 62 41 chr1 28453054 28454762 -168740670 - MMETn-int LTR ERVK -3321 4085 2356 6 802 2071 137 42 31 chr1 28455006 28455470 -168739962 - MMETn-int LTR ERVK -3958 3448 3055 6 802 649 266 6 34 chr1 28455470 28455649 -168739783 - MMETn-int LTR ERVK -4798 2608 2435 6 802 428 160 50 10 chr1 28455662 28455763 -168739669 - MMETn-int LTR ERVK -5329 2077 1973 6 802 35170 44 4 3 chr1 28455765 28461012 -168734420 + L1Md_T LINE L1 245 5589 -297 6 802 8303 38 0 0 chr1 28461012 28462007 -168733425 + L1Md_T LINE L1 5591 6585 0 6 802 3595 196 26 101 chr1 28462007 28463049 -168732383 - MMETn-int LTR ERVK -3773 1071 108 6 802 892 178 186 50 chr1 28463194 28463487 -168731945 - RLTR9E LTR ERVK 0 409 68 6 802 192 40 0 0 chr1 28463487 28463512 -168731920 + (C)n Simple_repeat Simple_repeat 1 25 0 6 802 892 178 186 50 chr1 28463512 28463578 -168731854 - RLTR9E LTR ERVK -342 67 2 6 802 207 105 0 26 chr1 28463991 28464030 -168731402 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 6 802 34 65 0 0 chr1 28464283 28464345 -168731087 + AT_rich Low_complexity Low_complexity 1 62 0 6 802 23 0 0 0 chr1 28464539 28464562 -168730870 + AT_rich Low_complexity Low_complexity 1 23 0 6 802 1208 351 53 54 chr1 28464592 28465611 -168729821 - Lx8 LINE L1 -30 7443 6426 6 802 205 183 56 0 chr1 28465668 28465739 -168729693 + (TTG)n Simple_repeat Simple_repeat 2 76 0 6 802 423 0 0 0 chr1 28465910 28465957 -168729475 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 802 23 78 0 0 chr1 28467517 28467568 -168727864 + AT_rich Low_complexity Low_complexity 1 51 0 6 802 5001 53 2 0 chr1 28467603 28468223 -168727209 - L1Md_F2 LINE L1 -11 6571 5951 6 802 1036 209 21 75 chr1 28468246 28468526 -168726906 - L1_Mur2 LINE L1 -3222 2655 2391 6 802 3912 183 17 3 chr1 28468523 28469292 -168726140 - L1_Mur2 LINE L1 -1093 4784 4005 6 802 404 331 64 28 chr1 28469425 28469953 -168725479 + L1MA7 LINE L1 5299 5845 -446 6 802 1011 283 84 23 chr1 28470107 28470619 -168724813 + Lx7 LINE L1 5376 5950 -1694 6 802 206 143 20 0 chr1 28470645 28470694 -168724738 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 6 802 281 24 49 0 chr1 28470756 28470797 -168724635 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 802 1054 88 0 0 chr1 28470797 28470934 -168724498 - B1_Mus1 SINE Alu -11 137 1 6 802 1233 261 48 20 chr1 28471062 28471418 -168724014 - MTC LTR MaLR -14 407 42 6 802 400 345 4 2 chr1 28471457 28471645 -168723787 + Lx7 LINE L1 6543 6855 -789 6 802 251 182 0 0 chr1 28471652 28471696 -168723736 - ORR1D2 LTR MaLR -26 348 305 7 802 530 269 0 47 chr1 28471696 28471844 -168723588 + B1_Mus2 SINE Alu 1 141 -6 7 802 1070 285 47 13 chr1 28471908 28472207 -168723225 - ORR1D2 LTR MaLR -53 317 9 7 802 356 55 18 0 chr1 28472440 28472495 -168722937 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 7 802 22 94 0 0 chr1 28473129 28473193 -168722239 + AT_rich Low_complexity Low_complexity 1 64 0 7 802 2668 101 10 12 chr1 28473572 28473870 -168721562 + Lx3A LINE L1 5615 5911 -1070 7 802 201 39 0 0 chr1 28473870 28473896 -168721536 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 802 2668 101 10 12 chr1 28473896 28473998 -168721434 + Lx3A LINE L1 5912 6013 -968 7 802 291 295 30 2 chr1 28474149 28474267 -168721165 - L1_Mur3 LINE L1 -828 5058 4939 7 802 26 50 0 0 chr1 28474291 28474331 -168721101 + AT_rich Low_complexity Low_complexity 1 40 0 7 802 621 250 101 45 chr1 28474797 28475044 -168720388 - Lx2B LINE L1 -19 6981 6721 7 802 35 0 0 0 chr1 28475717 28475752 -168719680 + AT_rich Low_complexity Low_complexity 1 35 0 7 802 316 254 135 0 chr1 28475752 28475878 -168719554 + L1MA4 LINE L1 5785 5927 -373 7 802 34 24 0 0 chr1 28476562 28476603 -168718829 + AT_rich Low_complexity Low_complexity 1 41 0 7 802 338 302 28 107 chr1 28476641 28476856 -168718576 + B3A SINE B2 1 198 0 7 802 3486 75 4 4 chr1 28479770 28480237 -168715195 - Lx3_Mus LINE L1 0 7009 6543 7 802 4108 101 102 5 chr1 28480237 28480293 -168715139 + Lx3_Mus LINE L1 5852 5912 -1097 7 802 217 0 61 0 chr1 28480293 28480326 -168715106 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 802 4108 101 102 5 chr1 28480326 28480907 -168714525 + Lx3_Mus LINE L1 5913 6550 -459 7 802 250 184 41 0 chr1 28481034 28481083 -168714349 + Lx3_Mus LINE L1 6627 6677 -299 7 802 6906 34 1 0 chr1 28481085 28481908 -168713524 - L1Md_A LINE L1 0 6582 5759 7 802 1557 154 20 20 chr1 28481905 28482203 -168713229 + Lx3_Mus LINE L1 6673 6970 -3 7 802 28 29 0 0 chr1 28483077 28483112 -168712320 + AT_rich Low_complexity Low_complexity 1 35 0 7 802 660 182 0 0 chr1 28483335 28483472 -168711960 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 802 25 31 0 0 chr1 28483476 28483508 -168711924 + AT_rich Low_complexity Low_complexity 1 32 0 7 802 359 253 0 92 chr1 28483510 28483597 -168711835 - B1_Mur2 SINE Alu -38 111 33 7 802 339 25 0 0 chr1 28484316 28484356 -168711076 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 802 474 18 0 0 chr1 28484577 28484632 -168710800 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 802 558 260 78 74 chr1 28484963 28485246 -168710186 + Lx9 LINE L1 5761 6044 -1600 7 802 1641 244 137 27 chr1 28485290 28485656 -168709776 + L1_Mur2 LINE L1 501 939 -6147 7 802 3006 96 0 0 chr1 28485656 28486061 -168709371 + L1_Mus1 LINE L1 6163 6567 0 7 802 1641 244 137 27 chr1 28486061 28486368 -168709064 + L1_Mur2 LINE L1 940 1247 -5839 7 802 5760 143 14 8 chr1 28486364 28487383 -168708049 + L1_Mur2 LINE L1 2066 3090 -2787 7 802 207 0 0 0 chr1 28487383 28487406 -168708026 + (GGA)n Simple_repeat Simple_repeat 1 23 0 7 802 189 107 0 0 chr1 28487425 28487453 -168707979 + (GAA)n Simple_repeat Simple_repeat 1 28 0 7 802 580 137 8 75 chr1 28487460 28487594 -168707838 + L1_Mur2 LINE L1 3051 3175 -2702 7 802 3416 136 59 11 chr1 28487596 28488170 -168707262 - Lx LINE L1 -3 6651 6050 7 802 413 155 0 0 chr1 28488170 28488241 -168707191 - L1_Mur2 LINE L1 -518 5359 5289 7 802 246 105 0 0 chr1 28488255 28488293 -168707139 - L1_Mur2 LINE L1 -2828 3049 3012 7 802 415 186 6 0 chr1 28488292 28488395 -168707037 + L1_Mur3 LINE L1 4761 4865 -1012 7 802 234 176 0 0 chr1 28488395 28488446 -168706986 + A-rich Low_complexity Low_complexity 1 51 0 7 802 311 302 25 41 chr1 28488461 28488582 -168706850 + Lx9 LINE L1 6507 6625 -1019 7 802 530 221 61 0 chr1 28488825 28488956 -168706476 + Lx9 LINE L1 6623 6761 -883 7 802 333 125 0 0 chr1 28488960 28489016 -168706416 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 802 208 169 0 63 chr1 28489567 28489630 -168705802 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 7 802 234 0 0 0 chr1 28489899 28489925 -168705507 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 802 318 338 101 71 chr1 28490364 28490539 -168704893 + L1MEf LINE L1 1290 1465 -4735 7 802 279 114 0 0 chr1 28490539 28490583 -168704849 + (CATA)n Simple_repeat Simple_repeat 2 45 0 7 802 318 338 101 71 chr1 28490583 28490703 -168704729 + L1MEf LINE L1 1466 1594 -4606 7 802 450 0 0 0 chr1 28491201 28491251 -168704181 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 802 328 315 65 46 chr1 28491433 28491586 -168703846 - L1MEc LINE L1 -6039 361 206 7 802 1624 203 38 43 chr1 28491661 28492057 -168703375 + ORR1B1 LTR MaLR 1 394 0 7 802 21 0 0 0 chr1 28493153 28493174 -168702258 + AT_rich Low_complexity Low_complexity 1 21 0 7 802 312 386 15 66 chr1 28494602 28494738 -168700694 + RSINE1 SINE B4 37 165 0 7 802 290 375 43 89 chr1 28494798 28495102 -168700330 + MLT1A0 LTR MaLR 30 319 -46 7 802 380 270 11 0 chr1 28495232 28495321 -168700111 - B3A SINE B2 -107 91 2 7 802 438 53 0 0 chr1 28496385 28496442 -168698990 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 802 317 306 127 118 chr1 28496605 28496935 -168698497 + L1M4 LINE L1 63 395 -6147 7 802 27 0 0 0 chr1 28497219 28497246 -168698186 + AT_rich Low_complexity Low_complexity 1 27 0 7 802 7418 77 2 4 chr1 28497259 28498487 -168696945 - L1Md_F2 LINE L1 0 6582 5359 7 802 352 317 123 16 chr1 28498487 28498731 -168696701 + L1M4 LINE L1 719 988 -5554 7 802 388 215 23 8 chr1 28498869 28498977 -168696455 + ORR1D2 LTR MaLR 270 379 0 7 802 1182 265 49 49 chr1 28499162 28499507 -168695925 + ORR1D1 LTR MaLR 1 345 -29 7 802 243 314 10 104 chr1 28499496 28499592 -168695840 - RLTR16 LTR ERVK -5 500 414 7 802 317 24 24 0 chr1 28499595 28499637 -168695795 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 802 582 15 0 0 chr1 28499637 28499703 -168695729 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 802 247 298 0 0 chr1 28499704 28499761 -168695671 - RLTR20D LTR ERVK -102 439 383 7 802 669 218 41 78 chr1 28499764 28499978 -168695454 - RLTR20D LTR ERVK -333 235 1 7 802 396 328 128 17 chr1 28500473 28500653 -168694779 - MTEa LTR MaLR 0 379 180 1 802 1464 309 10 5 chr1 28500653 28501056 -168694376 + MTD LTR MaLR 1 405 -14 2 802 1496 182 13 131 chr1 28501106 28501479 -168693953 + ORR1A4 LTR MaLR 1 329 0 3 802 230 333 61 0 chr1 28501624 28501723 -168693709 + MIRb SINE MIR 119 223 -45 4 802 541 306 72 33 chr1 28502559 28502844 -168692588 + RMER20B LTR ERVK 169 453 -189 5 802 26 0 0 0 chr1 28503044 28503070 -168692362 + AT_rich Low_complexity Low_complexity 1 26 0 6 802 5318 166 19 38 chr1 28503079 28503343 -168692089 + L1_Mus3 LINE L1 4856 5102 -781 7 802 1062 61 0 0 chr1 28503343 28503475 -168691957 + B1_Mus1 SINE Alu 5 136 -12 8 802 207 0 0 0 chr1 28503478 28503501 -168691931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 802 6936 129 22 14 chr1 28503501 28505011 -168690421 + L1_Mus3 LINE L1 5103 6632 -6 7 802 24 32 0 0 chr1 28505762 28505793 -168689639 + AT_rich Low_complexity Low_complexity 1 31 0 1 802 1557 37 0 11 chr1 28505794 28505984 -168689448 + B2_Mm1a SINE B2 2 189 -4 1 802 24 0 0 0 chr1 28505995 28506019 -168689413 + AT_rich Low_complexity Low_complexity 1 24 0 1 802 181 0 0 65 chr1 28506091 28506122 -168689310 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1 802 6508 58 0 0 chr1 28506125 28506940 -168688492 - L1Md_F2 LINE L1 0 6582 5768 1 802 192 40 0 0 chr1 28507037 28507062 -168688370 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 802 7050 40 0 0 chr1 28507234 28508088 -168687344 - L1Md_F2 LINE L1 -617 5266 4413 1 802 2628 32 3 0 chr1 28508086 28508398 -168687034 + L1Md_F2 LINE L1 5273 5585 -298 1 802 7965 52 2 1 chr1 28508399 28509392 -168686040 + L1Md_F2 LINE L1 5587 6580 -2 1 802 23 0 0 0 chr1 28509496 28509519 -168685913 + AT_rich Low_complexity Low_complexity 1 23 0 1 802 21 0 0 0 chr1 28509534 28509555 -168685877 + AT_rich Low_complexity Low_complexity 1 21 0 1 802 651 204 0 0 chr1 28510249 28510362 -168685070 + RMER6D LTR ERVK 602 714 -6 1 802 6515 191 87 21 chr1 28510364 28512978 -168682454 + RMER6-int LTR ERVK 1 5004 -256 1 802 3708 20 53 4 chr1 28512979 28513432 -168682000 - IAPLTR2_Mm LTR ERVK 0 475 1 2 802 6831 41 2 6 chr1 28513434 28514264 -168681168 - IAPEz-int LTR ERVK -2 6479 5653 2 802 2708 59 3 3 chr1 28514259 28514601 -168680831 - IAPEz-int LTR ERVK -4781 1700 1359 2 802 3426 56 22 16 chr1 28514601 28515167 -168680265 - IAPEz-int LTR ERVK -5819 662 168 2 802 237 250 0 0 chr1 28515167 28515211 -168680221 - RLTR27 LTR ERVK -34 275 232 2 802 846 88 0 9 chr1 28515214 28515329 -168680103 - IAPEz-int LTR ERVK -7323 258 145 2 802 227 267 0 0 chr1 28515329 28515374 -168680058 - RLTR27 LTR ERVK -34 275 231 2 802 521 142 16 124 chr1 28515374 28515503 -168679929 - IAPEz-int LTR ERVK -6358 123 9 2 802 3910 21 14 31 chr1 28515504 28515987 -168679445 - IAPLTR2_Mm LTR ERVK 0 475 1 2 802 827 199 0 6 chr1 28515987 28516147 -168679285 + RMER6-int LTR ERVK 2698 2856 -321 2 802 26 0 0 0 chr1 28516158 28516184 -168679248 + AT_rich Low_complexity Low_complexity 1 26 0 2 802 4812 146 55 7 chr1 28516186 28517006 -168678426 - Lx LINE L1 -2 6652 5794 2 802 546 123 0 0 chr1 28517007 28517088 -168678344 + Lx2 LINE L1 6562 6642 -355 2 802 1278 132 23 9 chr1 28517088 28517309 -168678123 + Lx2 LINE L1 6774 6997 0 2 802 22 0 0 0 chr1 28517395 28517417 -168678015 + AT_rich Low_complexity Low_complexity 1 22 0 2 802 1424 84 0 0 chr1 28517417 28517608 -168677824 - Lx LINE L1 -845 5809 5619 2 802 252 170 0 54 chr1 28517608 28517664 -168677768 + L1_Mur2 LINE L1 4390 4442 -1435 2 802 370 80 0 0 chr1 28517649 28517699 -168677733 + L1_Mur2 LINE L1 5572 5621 -256 2 802 1308 175 18 147 chr1 28517720 28518176 -168677256 - RMER17C LTR ERVK -13 397 1 3 802 1411 181 50 30 chr1 28518179 28518480 -168676952 + RMER6-int LTR ERVK 2868 3174 -3 2 802 2947 227 62 12 chr1 28518485 28519167 -168676265 + RMER6D LTR ERVK 4 719 -1 2 802 833 235 178 28 chr1 28519387 28519582 -168675850 - RMER17C LTR ERVK -2 408 207 3 802 432 0 0 0 chr1 28519582 28519630 -168675802 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 802 225 0 0 0 chr1 28519630 28519654 -168675778 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 802 833 235 178 28 chr1 28519654 28519812 -168675620 - RMER17C LTR ERVK -204 206 2 3 802 391 303 24 16 chr1 28519863 28519987 -168675445 + MTEa LTR MaLR 3 127 -252 3 802 236 268 40 40 chr1 28520006 28520080 -168675352 + MTEa LTR MaLR 181 254 -125 3 802 626 222 14 7 chr1 28520402 28520547 -168674885 + B1_Mur2 SINE Alu 4 149 0 3 802 297 282 57 109 chr1 28520547 28520930 -168674502 + L1MC LINE L1 3662 4028 -2118 3 802 3881 51 108 2 chr1 28520930 28521440 -168673992 + LTRIS2 LTR ERV1 1 564 0 3 802 297 282 57 109 chr1 28521440 28521458 -168673974 + L1MC LINE L1 4029 4042 -2104 3 802 301 289 157 35 chr1 28521505 28521760 -168673672 + L1MC LINE L1 4142 4427 -1719 3 802 668 215 41 0 chr1 28521926 28522047 -168673385 + ETnERV2-int LTR ERVK 7070 7195 -211 3 802 26 0 0 0 chr1 28522614 28522640 -168672792 + AT_rich Low_complexity Low_complexity 1 26 0 3 802 6230 129 65 8 chr1 28522796 28523959 -168671473 - Lx LINE L1 0 6654 5429 4 802 664 257 16 40 chr1 28524679 28524975 -168670457 + RMER17C LTR ERVK 1 244 -166 4 802 1031 45 8 0 chr1 28524975 28525108 -168670324 + (TC)n Simple_repeat Simple_repeat 2 135 0 4 802 601 297 16 61 chr1 28525108 28525274 -168670158 + RMER17C LTR ERVK 228 381 -29 4 802 417 39 0 0 chr1 28525277 28525328 -168670104 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 4 802 632 285 219 18 chr1 28525470 28526013 -168669419 + RCHARR1 DNA MER1_type 131 782 -192 4 802 396 0 0 0 chr1 28526013 28526057 -168669375 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 802 198 0 0 0 chr1 28526057 28526078 -168669354 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 802 360 363 72 29 chr1 28526130 28526337 -168669095 - B3 SINE B2 0 216 1 4 802 306 288 35 18 chr1 28526348 28526461 -168668971 + RCHARR1 DNA MER1_type 860 974 0 4 802 1408 217 85 66 chr1 28526469 28526603 -168668829 + RMER16 LTR ERVK 116 267 -266 4 802 3264 51 5 0 chr1 28526603 28526997 -168668435 + MTA_Mm LTR MaLR 1 396 0 4 802 1408 217 85 66 chr1 28526997 28527272 -168668160 + RMER16 LTR ERVK 268 533 0 4 802 438 69 0 0 chr1 28528893 28528951 -168666481 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 802 2139 161 103 30 chr1 28528965 28529532 -168665900 - Lx3_Mus LINE L1 -12 6961 6336 5 802 621 0 0 0 chr1 28529572 28529641 -168665791 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 802 22 56 0 0 chr1 28530055 28530091 -168665341 + AT_rich Low_complexity Low_complexity 1 36 0 5 802 1692 263 21 35 chr1 28530502 28531128 -168664304 + L1_Mur3 LINE L1 3712 4328 -1552 5 802 2014 275 75 102 chr1 28531107 28531816 -168663616 + Lx6 LINE L1 5721 6474 -986 5 802 1363 45 6 6 chr1 28531816 28531996 -168663436 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 802 2014 277 69 96 chr1 28531996 28532312 -168663120 + Lx6 LINE L1 6475 6725 -971 5 802 23 0 0 0 chr1 28532878 28532901 -168662531 + AT_rich Low_complexity Low_complexity 1 23 0 5 802 627 278 121 26 chr1 28533813 28534086 -168661346 - MER76 LTR ERVL -29 662 364 5 802 987 32 0 0 chr1 28534485 28534608 -168660824 + (TG)n Simple_repeat Simple_repeat 2 124 0 5 802 1051 53 30 0 chr1 28534608 28534741 -168660691 - B1_Mm SINE Alu -9 138 2 6 802 2530 132 83 21 chr1 28535022 28535501 -168659931 - Lx2 LINE L1 0 6997 6489 6 802 499 304 9 0 chr1 28536996 28537111 -168658321 - RSINE1 SINE B4 -35 130 15 6 802 643 304 60 50 chr1 28537373 28537875 -168657557 - L1M2 LINE L1 -1163 4980 4474 6 802 1414 227 49 194 chr1 28539419 28540134 -168655298 - RMER19C LTR ERVK 0 611 1 6 802 740 328 62 52 chr1 28540160 28540640 -168654792 + Lx9 LINE L1 6616 7100 -544 6 802 2380 271 57 29 chr1 28540641 28542196 -168653236 - Lx6 LINE L1 -27 7433 5594 6 802 240 355 77 15 chr1 28542194 28542466 -168652966 + Lx9 LINE L1 7321 7609 -35 6 802 23 0 0 0 chr1 28542499 28542522 -168652910 + AT_rich Low_complexity Low_complexity 1 23 0 6 802 962 306 41 9 chr1 28542548 28542865 -168652567 + Lx9 LINE L1 7070 7396 -248 6 802 1290 280 41 24 chr1 28542873 28543062 -168652370 + MTC LTR MaLR 1 195 -226 6 802 717 12 0 0 chr1 28543062 28543144 -168652288 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 802 1290 280 41 24 chr1 28543144 28543368 -168652064 + MTC LTR MaLR 196 420 -1 6 802 200 125 0 48 chr1 28543521 28543563 -168651869 + CT-rich Low_complexity Low_complexity 4 43 0 7 802 402 143 0 0 chr1 28543588 28543665 -168651767 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 802 1922 266 31 22 chr1 28543922 28543970 -168651462 + Lx6 LINE L1 6954 7002 -458 7 802 3935 65 20 0 chr1 28543970 28544463 -168650969 + RLTR1C LTR ERV1 1 503 0 7 802 1922 266 31 22 chr1 28544463 28544903 -168650529 + Lx6 LINE L1 7003 7446 -14 7 802 319 221 0 59 chr1 28544922 28545023 -168650409 + MTC-int LTR MaLR 242 336 -922 7 802 1123 223 99 95 chr1 28545034 28545446 -168649986 + Lx7 LINE L1 7013 7426 -270 7 802 216 97 0 0 chr1 28545499 28545530 -168649902 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 802 325 271 58 53 chr1 28545549 28545775 -168649657 + Lx7 LINE L1 7454 7680 -16 7 802 1879 263 76 105 chr1 28545801 28546000 -168649432 + MTC-int LTR MaLR 377 685 -573 7 802 522 46 0 0 chr1 28546000 28546065 -168649367 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 802 1879 252 62 39 chr1 28546065 28546609 -168648823 + MTC-int LTR MaLR 686 1245 -13 7 802 523 231 0 83 chr1 28546617 28546749 -168648683 + MTC LTR MaLR 42 162 -259 7 802 336 64 0 0 chr1 28547183 28547230 -168648202 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 802 474 101 0 0 chr1 28547230 28547299 -168648133 + (TAG)n Simple_repeat Simple_repeat 3 71 0 8 802 3537 50 0 0 chr1 28548415 28548851 -168646581 + L1Md_F2 LINE L1 6133 6568 -14 8 802 309 385 16 58 chr1 28549246 28549436 -168645996 - MLT-int LTR MaLR -615 1120 939 8 802 296 333 93 72 chr1 28549504 28549561 -168645871 - MLT-int LTR MaLR -1017 718 662 8 802 714 255 168 9 chr1 28549561 28549882 -168645550 + ORR1D1 LTR MaLR 3 374 0 8 802 296 333 93 72 chr1 28549882 28550060 -168645372 - MLT-int LTR MaLR -1074 661 479 8 802 1522 241 13 34 chr1 28550110 28550181 -168645251 - ORR1D1 LTR MaLR -4 370 303 8 802 4927 144 74 27 chr1 28550181 28551096 -168644336 + RMER17B LTR ERVK 1 958 0 8 802 1522 241 13 34 chr1 28551096 28551402 -168644030 - ORR1D1 LTR MaLR -72 302 1 8 802 832 349 56 3 chr1 28551408 28551781 -168643651 - MLT-int LTR MaLR -1323 412 20 8 802 374 348 55 38 chr1 28551838 28552074 -168643358 - MLT1A0 LTR MaLR -95 270 31 8 802 2593 198 124 50 chr1 28553319 28553663 -168641769 + RMER6D LTR ERVK 1 364 -356 8 802 246 32 0 0 chr1 28553663 28553694 -168641738 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 802 2593 198 124 50 chr1 28553694 28554009 -168641423 + RMER6D LTR ERVK 365 709 -11 8 802 550 304 34 10 chr1 28554046 28554255 -168641177 + B3 SINE B2 3 216 0 8 802 272 368 34 42 chr1 28554802 28554921 -168640511 + RSINE1 SINE B4 44 161 -4 9 802 308 415 0 0 chr1 28554935 28555111 -168640321 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 9 802 21 36 0 0 chr1 28555123 28555151 -168640281 + AT_rich Low_complexity Low_complexity 1 28 0 9 802 3246 11 0 3 chr1 28555757 28556130 -168639302 + L1Md_T LINE L1 6208 6579 -3 9 802 994 103 0 14 chr1 28556554 28556702 -168638730 - B1_Mus1 SINE Alu -1 147 2 9 802 1250 110 0 0 chr1 28556835 28557008 -168638424 - L1_Mm LINE L1 -182 5701 5529 9 802 1566 80 4 4 chr1 28557008 28557235 -168638197 + L1_Mus4 LINE L1 6403 6629 -7 9 802 280 278 0 20 chr1 28557290 28557388 -168638044 + L1MD LINE L1 5396 5491 -853 9 802 306 0 0 0 chr1 28557388 28557422 -168638010 + (A)n Simple_repeat Simple_repeat 1 34 0 9 802 589 287 62 117 chr1 28557526 28557855 -168637577 - RLTR21 LTR ERVK 0 1404 1122 9 802 363 78 0 0 chr1 28557855 28557906 -168637526 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 802 589 319 40 59 chr1 28557906 28557930 -168637502 - RLTR21 LTR ERVK -451 1121 1098 9 802 3497 212 29 50 chr1 28557949 28558862 -168636570 - RLTR21 LTR ERVK -319 1253 361 1 802 4584 216 124 10 chr1 28558924 28560296 -168635136 - Lx5 LINE L1 -39 7011 5478 1 802 4679 184 22 31 chr1 28560290 28560486 -168634946 - Lx5 LINE L1 -1273 4604 4417 1 802 3712 55 0 2 chr1 28560486 28560956 -168634476 - L1Md_F2 LINE L1 -13 6569 6101 1 802 4679 184 22 31 chr1 28560956 28561806 -168633626 - Lx5 LINE L1 -1461 4416 3568 1 802 351 245 37 1 chr1 28561806 28561905 -168633527 + RMER6C LTR ERVK 601 754 -2 1 802 22 0 0 0 chr1 28562264 28562286 -168633146 + AT_rich Low_complexity Low_complexity 1 22 0 1 802 240 336 8 89 chr1 28562910 28563034 -168632398 + B3 SINE B2 103 216 0 1 802 568 353 12 0 chr1 28563207 28563380 -168632052 + B3A SINE B2 1 175 -23 1 802 561 52 0 0 chr1 28563993 28564070 -168631362 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 802 430 31 31 0 chr1 28564070 28564133 -168631299 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 802 256 287 222 0 chr1 28564265 28564373 -168631059 - B3 SINE B2 -25 191 60 1 802 36 0 0 0 chr1 28564984 28565020 -168630412 + AT_rich Low_complexity Low_complexity 1 36 0 1 802 203 130 43 0 chr1 28565519 28565565 -168629867 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 802 943 123 7 0 chr1 28565565 28565711 -168629721 - B1_Mus1 SINE Alu -1 147 1 1 802 617 291 53 19 chr1 28566570 28566777 -168628655 + Lx8 LINE L1 6846 7059 -414 1 802 280 271 71 0 chr1 28566785 28566870 -168628562 + URR1B DNA MER1_type 124 214 -11 1 802 1747 128 14 7 chr1 28566870 28567153 -168628279 + Lx LINE L1 6363 6647 -7 1 802 629 344 92 34 chr1 28567170 28567368 -168628064 - Lx8 LINE L1 -1089 6384 6170 1 802 423 83 0 0 chr1 28567368 28567428 -168628004 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 802 629 338 117 25 chr1 28567428 28567909 -168627523 - Lx8 LINE L1 -1304 6169 5656 1 802 2694 128 7 2 chr1 28567909 28568339 -168627093 + L1_Mus3 LINE L1 6206 6637 -1 1 802 551 330 152 11 chr1 28568339 28568668 -168626764 - Lx8 LINE L1 -225 5655 5266 1 802 635 264 163 63 chr1 28568702 28569143 -168626289 - Lx9 LINE L1 -64 7580 7096 1 802 517 294 65 81 chr1 28569170 28569307 -168626125 - Lx8 LINE L1 -594 5286 5144 1 802 180 0 0 0 chr1 28569307 28569327 -168626105 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 802 517 294 65 81 chr1 28569327 28569496 -168625936 - Lx8 LINE L1 -737 5143 4985 1 802 490 250 18 88 chr1 28569529 28569757 -168625675 - Lx8 LINE L1 -2958 2922 2711 1 802 22 0 0 0 chr1 28569759 28569781 -168625651 + AT_rich Low_complexity Low_complexity 1 22 0 1 802 773 295 101 23 chr1 28570044 28570481 -168624951 + L1MCa LINE L1 2 472 -6036 1 802 285 325 30 99 chr1 28570566 28570798 -168624634 + L1MCa LINE L1 486 701 -5807 1 802 21 0 0 0 chr1 28571129 28571150 -168624282 + AT_rich Low_complexity Low_complexity 1 21 0 1 802 236 231 24 47 chr1 28571150 28571277 -168624155 + RMER17C LTR ERVK 152 275 -135 1 802 342 218 0 33 chr1 28571330 28571420 -168624012 + L1VL2 LINE L1 107 193 -6142 1 100 20551 147 87 14 chr1 28571430 28575921 -168619511 + L1Md_F LINE L1 355 5171 -712 1 803 3583 95 0 1 chr1 28575924 28576483 -168618949 - L1_Mus2 LINE L1 -499 6067 5511 1 803 1250 90 6 0 chr1 28576462 28576639 -168618793 + L1_Mus2 LINE L1 6067 6244 -322 1 803 1451 113 32 0 chr1 28576629 28576850 -168618582 + L1_Mm LINE L1 4597 4824 -1059 1 803 2237 83 9 3 chr1 28576850 28577165 -168618267 + L1_Mus2 LINE L1 6250 6566 0 1 803 272 318 86 34 chr1 28577165 28577690 -168617742 + L1M2 LINE L1 3075 3626 -2517 1 803 26 30 0 0 chr1 28578195 28578228 -168617204 + AT_rich Low_complexity Low_complexity 1 33 0 1 803 326 228 65 29 chr1 28578535 28578696 -168616736 + Lx7 LINE L1 7554 7696 0 1 803 476 356 35 57 chr1 28578870 28579153 -168616279 + B4A SINE B4 3 279 -13 1 803 315 244 61 18 chr1 28579608 28579771 -168615661 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 1 803 715 319 122 40 chr1 28582038 28582195 -168613237 - MTEa LTR MaLR -46 333 156 1 803 3453 72 43 23 chr1 28582195 28582681 -168612751 - L1_Mus2 LINE L1 -1 6565 6070 1 803 715 319 122 40 chr1 28582681 28582827 -168612605 - MTEa LTR MaLR -224 155 5 1 803 1209 295 42 46 chr1 28583386 28583820 -168611612 - Lx6 LINE L1 -26 7434 7003 1 803 212 174 43 14 chr1 28584449 28584519 -168610913 + (CAA)n Simple_repeat Simple_repeat 2 73 0 1 803 3212 152 4 2 chr1 28584519 28585032 -168610400 - MT2B LTR ERVL -82 519 6 1 803 479 17 17 0 chr1 28586008 28586068 -168609364 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 1 803 249 291 29 19 chr1 28587047 28587152 -168608280 + L1MD3 LINE L1 7767 7872 -123 1 803 437 62 15 0 chr1 28587273 28587338 -168608094 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 803 22 35 0 0 chr1 28587348 28587377 -168608055 + AT_rich Low_complexity Low_complexity 1 29 0 1 803 508 386 68 13 chr1 28588039 28588435 -168606997 + RCHARR1 DNA MER1_type 3 420 -554 1 803 21 36 0 0 chr1 28588468 28588496 -168606936 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 1290 264 64 5 chr1 28588497 28588920 -168606512 + RCHARR1 DNA MER1_type 521 968 -6 1 803 3889 15 2 7 chr1 28589776 28590235 -168605197 + L1Md_T LINE L1 6126 6582 0 1 803 327 310 132 45 chr1 28591094 28591654 -168603778 - L1M2 LINE L1 -745 5398 4790 1 803 198 0 0 0 chr1 28591967 28591989 -168603443 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 803 278 258 105 16 chr1 28592725 28592869 -168602563 + L1MA9 LINE L1 5769 5923 -245 1 803 514 339 83 38 chr1 28593039 28593303 -168602129 + B4A SINE B4 16 291 -1 1 803 25 75 0 0 chr1 28593381 28593434 -168601998 + AT_rich Low_complexity Low_complexity 1 53 0 1 803 514 241 9 0 chr1 28594520 28594628 -168600804 - B1_Mur1 SINE Alu 0 149 41 1 803 2462 209 55 21 chr1 28594904 28595472 -168599960 - Lx2B LINE L1 -5 6995 6409 1 803 1181 309 84 2 chr1 28595461 28595912 -168599520 - Lx6 LINE L1 -1030 6430 5943 1 803 471 84 0 0 chr1 28595919 28595990 -168599442 - L1_Mus3 LINE L1 -12 6626 6556 1 803 1027 79 14 14 chr1 28595990 28596132 -168599300 + L1_Mus3 LINE L1 6131 6272 -366 1 803 480 214 10 0 chr1 28596139 28596242 -168599190 - Lx6 LINE L1 -1496 5964 5861 1 803 7860 161 32 9 chr1 28597256 28599537 -168595895 - Lx4B LINE L1 -8 7050 4717 1 803 233 216 0 19 chr1 28599976 28600028 -168595404 + CT-rich Low_complexity Low_complexity 2 52 0 1 803 25 31 0 0 chr1 28600788 28600820 -168594612 + AT_rich Low_complexity Low_complexity 1 32 0 1 803 964 106 7 0 chr1 28600869 28601011 -168594421 - B1_Mus1 SINE Alu -3 145 3 1 803 359 159 16 0 chr1 28601019 28601082 -168594350 - B1_Mur4 SINE Alu -6 144 81 1 803 1100 239 65 39 chr1 28601134 28601647 -168593785 - Lx7 LINE L1 -1536 6108 5546 1 803 794 295 103 38 chr1 28601638 28602057 -168593375 + Lx9 LINE L1 6902 7347 -297 1 803 414 100 0 0 chr1 28602157 28602217 -168593215 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 803 44 56 0 0 chr1 28602361 28602433 -168592999 + AT_rich Low_complexity Low_complexity 1 72 0 1 803 2622 95 0 30 chr1 28602474 28602877 -168592555 + L1Md_F2 LINE L1 6187 6577 -5 1 803 1665 77 0 5 chr1 28603009 28603231 -168592201 - L1_Mus3 LINE L1 -122 6444 6224 1 803 668 121 30 0 chr1 28603231 28603363 -168592069 + L1_Mus3 LINE L1 6497 6632 -6 1 803 3763 112 5 7 chr1 28603708 28604281 -168591151 + L1_Mm LINE L1 4819 5390 -493 1 803 21 82 0 0 chr1 28604516 28604565 -168590867 + AT_rich Low_complexity Low_complexity 1 49 0 1 803 21 36 0 0 chr1 28604925 28604953 -168590479 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 1703 288 121 28 chr1 28605379 28606438 -168588994 + L1_Rod LINE L1 3876 5032 -815 1 803 492 317 43 17 chr1 28606706 28606937 -168588495 - MLT1B LTR MaLR -153 237 1 1 803 443 365 23 76 chr1 28608208 28608257 -168587175 - RSINE1 SINE B4 0 165 121 1 803 895 256 92 33 chr1 28608257 28608616 -168586816 - ORR1C2 LTR MaLR 0 384 5 1 803 443 365 23 76 chr1 28608616 28608738 -168586694 - RSINE1 SINE B4 -45 120 3 1 803 323 73 0 18 chr1 28608893 28608949 -168586483 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 803 772 101 0 0 chr1 28609525 28609634 -168585798 + L1_Mus2 LINE L1 6219 6327 -239 1 803 24059 115 8 3 chr1 28609650 28614418 -168581014 - L1_Mus1 LINE L1 0 6567 1782 1 803 1177 95 5 16 chr1 28614490 28614682 -168580750 - L1_Mus4 LINE L1 -10 6626 6437 1 803 273 372 93 58 chr1 28615095 28615386 -168580046 - MLT1A0 LTR MaLR -4 361 61 1 803 310 322 144 61 chr1 28615730 28616090 -168579342 + Charlie2b DNA MER1_type 45 434 -2348 1 803 278 391 7 36 chr1 28617290 28617428 -168578004 - ID_B1 SINE B4 -8 216 83 1 803 1161 55 7 0 chr1 28617962 28618108 -168577324 + B1_Mus1 SINE Alu 2 148 0 1 803 395 67 66 19 chr1 28618108 28618214 -168577218 + A-rich Low_complexity Low_complexity 5 115 0 1 803 375 23 0 0 chr1 28618260 28618304 -168577128 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 803 180 0 0 0 chr1 28619091 28619111 -168576321 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 803 25 0 0 0 chr1 28619667 28619692 -168575740 + AT_rich Low_complexity Low_complexity 1 25 0 1 803 1675 228 105 9 chr1 28620602 28621049 -168574383 - Lx2B LINE L1 -3 6997 6508 1 803 740 278 112 26 chr1 28621816 28621881 -168573551 - MTD LTR MaLR -6 413 351 1 803 231 88 0 0 chr1 28621881 28621915 -168573517 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1 803 740 278 112 26 chr1 28621915 28622196 -168573236 - MTD LTR MaLR -69 350 39 1 803 213 246 0 0 chr1 28622392 28622457 -168572975 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 803 22 0 0 0 chr1 28623292 28623314 -168572118 + AT_rich Low_complexity Low_complexity 1 22 0 1 803 1014 51 0 35 chr1 28623878 28624021 -168571411 + B1_Mus1 SINE Alu 11 148 0 1 803 196 53 53 0 chr1 28624471 28624509 -168570923 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 803 1010 219 9 31 chr1 28624997 28625223 -168570209 + URR1A DNA MER1_type 3 223 -3 1 803 21 0 0 0 chr1 28626046 28626067 -168569365 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 354 21 21 0 chr1 28626665 28626807 -168568625 - L1_Mus2 LINE L1 0 6566 6511 1 803 1694 122 4 0 chr1 28626807 28627069 -168568363 - L1_Mm LINE L1 -3079 2804 2542 1 803 1821 70 4 12 chr1 28627930 28628177 -168567255 + L1Md_F2 LINE L1 6335 6579 -3 1 803 336 32 0 87 chr1 28628272 28628341 -168567091 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 1 803 967 129 0 0 chr1 28628341 28628488 -168566944 - B1_Mm SINE Alu 0 147 1 2 803 630 311 61 20 chr1 28629020 28629427 -168566005 - L1MA4 LINE L1 -464 5836 5413 2 803 3543 126 23 20 chr1 28630136 28630746 -168564686 - Lx3A LINE L1 -380 6601 5990 2 803 2338 178 7 2 chr1 28630747 28631164 -168564268 + Lx3A LINE L1 6562 6980 -1 2 803 4002 74 18 7 chr1 28631185 28631732 -168563700 + L1_Mus3 LINE L1 6079 6631 -7 2 803 32 26 0 0 chr1 28631733 28631772 -168563660 + AT_rich Low_complexity Low_complexity 1 39 0 2 803 29 28 0 0 chr1 28632828 28632864 -168562568 + AT_rich Low_complexity Low_complexity 1 36 0 2 803 1621 134 14 7 chr1 28633289 28633574 -168561858 - Lx2 LINE L1 -4 6993 6707 2 803 27 0 0 0 chr1 28634731 28634758 -168560674 + AT_rich Low_complexity Low_complexity 1 27 0 2 803 378 0 0 0 chr1 28634892 28634934 -168560498 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 803 435 271 61 23 chr1 28635018 28635150 -168560282 - B1F1 SINE Alu 0 149 13 2 803 261 0 0 0 chr1 28635617 28635646 -168559786 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 803 324 0 0 0 chr1 28635646 28635681 -168559751 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 803 579 203 15 45 chr1 28635801 28635935 -168559497 - RMER1C Other Other -16 1326 1197 2 803 206 207 0 17 chr1 28635935 28635994 -168559438 + GA-rich Low_complexity Low_complexity 1 58 0 2 803 1116 96 0 17 chr1 28635998 28636074 -168559358 + (GAA)n Simple_repeat Simple_repeat 3 78 0 2 803 1031 135 11 0 chr1 28636074 28636252 -168559180 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 803 1203 103 0 6 chr1 28636252 28636532 -168558900 + (GAA)n Simple_repeat Simple_repeat 1 278 0 2 803 288 0 0 0 chr1 28636532 28636564 -168558868 + (GGA)n Simple_repeat Simple_repeat 1 32 0 2 803 339 85 0 0 chr1 28636564 28636611 -168558821 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 2 803 283 290 79 10 chr1 28636611 28636712 -168558720 - RMER4A LTR ERVK -79 387 280 2 803 350 153 96 14 chr1 28636718 28636791 -168558641 - RMER1C Other Other -199 1143 1065 2 803 1791 169 33 0 chr1 28636792 28637123 -168558309 - MurERV4_19-int LTR ERVK -1796 3984 3643 2 803 219 36 0 0 chr1 28637123 28637151 -168558281 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 803 953 164 107 5 chr1 28637625 28637840 -168557592 - MurERV4_19-int LTR ERVK -2123 3657 3421 2 803 1729 347 76 31 chr1 28638343 28639330 -168556102 - RMER15-int LTR ERVL -3191 1808 778 2 803 1412 28 6 0 chr1 28639940 28640118 -168555314 + L1Md_F2 LINE L1 6393 6571 -11 2 803 264 330 85 0 chr1 28640243 28640361 -168555071 - RMER15 LTR ERVL -45 530 403 2 803 341 383 15 15 chr1 28640507 28640711 -168554721 - Lx8 LINE L1 -249 7224 7021 2 803 375 23 0 0 chr1 28642504 28642548 -168552884 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 803 4487 52 20 5 chr1 28642927 28643513 -168551919 + L1Md_F2 LINE L1 5988 6582 0 2 803 525 129 0 57 chr1 28644203 28644326 -168551106 - L1_Mus4 LINE L1 -5 6631 6516 2 803 391 351 35 29 chr1 28645026 28645199 -168550233 - Lx8 LINE L1 -211 7262 7089 2 803 1483 247 126 11 chr1 28645728 28646190 -168549242 + Lx9 LINE L1 6180 6694 -950 2 803 1548 233 125 67 chr1 28646201 28646491 -168548941 + RMER17D LTR ERVK 42 289 -462 2 803 933 92 29 6 chr1 28646491 28646665 -168548767 + (TC)n Simple_repeat Simple_repeat 2 179 0 2 803 2232 128 74 25 chr1 28646665 28647066 -168548366 + RMER17D LTR ERVK 465 888 -1 2 803 1331 78 16 0 chr1 28647915 28648107 -168547325 - L1_Mus2 LINE L1 0 6566 6372 2 803 3613 112 7 0 chr1 28648107 28648649 -168546783 + L1_Mm LINE L1 4191 4736 -1147 2 803 974 103 7 0 chr1 28648996 28649142 -168546290 + B1_Mus1 SINE Alu 2 148 0 2 803 261 145 0 0 chr1 28649146 28649208 -168546224 + (A)n Simple_repeat Simple_repeat 1 62 0 2 803 1530 11 0 0 chr1 28649232 28649408 -168546024 + (GAA)n Simple_repeat Simple_repeat 2 177 0 2 803 192 111 0 0 chr1 28650714 28650750 -168544682 + (T)n Simple_repeat Simple_repeat 1 36 0 2 803 23 0 0 0 chr1 28651808 28651831 -168543601 + AT_rich Low_complexity Low_complexity 1 23 0 2 803 23 33 0 0 chr1 28652393 28652423 -168543009 + AT_rich Low_complexity Low_complexity 1 30 0 2 803 469 303 44 31 chr1 28652772 28653000 -168542432 + MLT2B1 LTR ERVL 1 229 -327 2 803 23 0 0 0 chr1 28653055 28653078 -168542354 + AT_rich Low_complexity Low_complexity 1 23 0 2 803 267 346 0 0 chr1 28653472 28653550 -168541882 - PB1D10 SINE Alu -4 113 36 2 803 897 314 89 3 chr1 28653804 28654120 -168541312 - Lx8 LINE L1 -523 6950 6608 2 803 554 274 116 14 chr1 28654303 28654518 -168540914 - Lx6 LINE L1 -5 7455 7219 2 803 390 141 0 14 chr1 28654490 28654562 -168540870 + L1_Mur3 LINE L1 2592 2662 -3218 2 803 554 206 30 45 chr1 28654538 28654670 -168540762 + Lx6 LINE L1 6737 6866 -594 2 803 1643 147 37 10 chr1 28654717 28655013 -168540419 + Lx LINE L1 6344 6647 -7 2 803 1655 212 63 5 chr1 28655040 28655471 -168539961 + L1_Mur3 LINE L1 2648 3103 -2777 2 803 2230 301 92 19 chr1 28655440 28656448 -168538984 + Lx6 LINE L1 6104 7417 -43 2 803 2154 214 39 0 chr1 28656523 28657032 -168538400 + L1_Mur3 LINE L1 3986 4514 -1366 2 803 4723 144 62 43 chr1 28657032 28657722 -168537710 - Lx2B LINE L1 -26 6974 6271 2 803 1054 57 0 0 chr1 28657722 28657862 -168537570 - L1Md_T LINE L1 0 6582 6443 2 803 4723 144 62 43 chr1 28657862 28658076 -168537356 - Lx2B LINE L1 -730 6270 6053 2 803 650 341 82 25 chr1 28658095 28658416 -168537016 + MTD LTR MaLR 1 346 -73 2 803 222 37 0 0 chr1 28658416 28658443 -168536989 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 803 650 340 82 22 chr1 28658443 28658513 -168536919 + MTD LTR MaLR 347 418 -1 2 803 314 40 60 0 chr1 28658685 28658735 -168536697 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2 803 308 143 63 25 chr1 28658859 28658938 -168536494 - Lx9 LINE L1 -163 7481 7400 2 803 742 268 58 50 chr1 28658947 28659187 -168536245 + Lx9 LINE L1 7149 7390 -254 2 803 489 34 0 0 chr1 28659760 28659819 -168535613 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 803 23 0 0 0 chr1 28659908 28659931 -168535501 + AT_rich Low_complexity Low_complexity 1 23 0 2 803 212 184 0 0 chr1 28660679 28660717 -168534715 + A-rich Low_complexity Low_complexity 1 38 0 2 803 1155 178 126 8 chr1 28661312 28661573 -168533859 + Lx2 LINE L1 6706 6997 0 2 803 1142 253 104 30 chr1 28661795 28662264 -168533168 + Lx9 LINE L1 7132 7635 -9 2 803 1271 111 11 0 chr1 28662434 28662623 -168532809 + B2_Mm1t SINE B2 3 193 0 2 803 23 33 0 0 chr1 28662779 28662809 -168532623 + AT_rich Low_complexity Low_complexity 1 30 0 2 803 34 79 0 0 chr1 28663163 28663239 -168532193 + AT_rich Low_complexity Low_complexity 1 76 0 2 803 26 0 0 0 chr1 28663372 28663398 -168532034 + AT_rich Low_complexity Low_complexity 1 26 0 2 803 292 452 19 6 chr1 28663409 28663565 -168531867 - RSINE1 SINE B4 -4 161 4 2 803 21 36 0 0 chr1 28663623 28663651 -168531781 + AT_rich Low_complexity Low_complexity 1 28 0 2 803 22 0 0 0 chr1 28663902 28663924 -168531508 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 21 71 0 0 chr1 28664275 28664317 -168531115 + AT_rich Low_complexity Low_complexity 1 42 0 2 803 194 261 0 22 chr1 28664371 28664461 -168530971 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2 803 757 203 156 0 chr1 28665237 28665429 -168530003 - URR1A DNA MER1_type 0 226 5 2 803 3103 165 9 7 chr1 28665486 28666034 -168529398 + Lx2B LINE L1 6445 6993 -7 2 803 30 27 0 0 chr1 28666240 28666277 -168529155 + AT_rich Low_complexity Low_complexity 1 37 0 2 803 22 0 0 0 chr1 28666403 28666425 -168529007 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 243 189 0 0 chr1 28666584 28666637 -168528795 + A-rich Low_complexity Low_complexity 4 56 0 2 803 519 60 0 0 chr1 28667010 28667077 -168528355 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 803 23 54 0 0 chr1 28667271 28667308 -168528124 + AT_rich Low_complexity Low_complexity 1 37 0 2 803 222 174 0 0 chr1 28667563 28667609 -168527823 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2 803 6349 107 48 12 chr1 28667826 28668774 -168526658 + RLTR13C1 LTR ERVK 1 983 0 2 803 584 255 35 0 chr1 28669128 28669273 -168526159 - Lx6 LINE L1 -9 7451 7302 2 803 6573 162 59 6 chr1 28669260 28670426 -168525006 - L1_Mur1 LINE L1 -205 5681 4458 2 803 480 35 0 0 chr1 28670426 28670484 -168524948 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 2 803 6573 162 59 6 chr1 28670484 28670546 -168524886 - L1_Mur1 LINE L1 -1429 4457 4388 2 803 554 212 101 20 chr1 28670546 28670695 -168524737 + RLTR20A2 LTR ERVK 1 161 -417 2 803 377 263 20 0 chr1 28670918 28671017 -168524415 + RLTR20A2 LTR ERVK 222 322 -256 2 803 1298 168 0 4 chr1 28671025 28671264 -168524168 - L1_Mur1 LINE L1 -1738 4139 3902 2 803 429 248 23 31 chr1 28671255 28671384 -168524048 + Lx3C LINE L1 6228 6355 -621 2 803 797 235 84 5 chr1 28671440 28671654 -168523778 + Lx3C LINE L1 6738 6968 -8 2 803 3668 104 52 6 chr1 28671656 28672197 -168523235 - L1_Mus4 LINE L1 0 6636 6071 2 803 541 98 0 0 chr1 28672197 28672279 -168523153 + L1_Mur1 LINE L1 3593 3674 -2212 2 803 810 62 0 0 chr1 28672275 28672371 -168523061 - L1Md_F3 LINE L1 -338 6246 6151 2 803 2794 38 3 9 chr1 28672371 28672717 -168522715 + L1Md_F3 LINE L1 6226 6569 -15 2 803 2571 55 0 0 chr1 28673315 28673642 -168521790 + L1Md_A LINE L1 6255 6581 -1 2 803 371 92 15 0 chr1 28674221 28674286 -168521146 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 803 22 0 0 0 chr1 28674873 28674895 -168520537 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 31 44 0 0 chr1 28675207 28675252 -168520180 + AT_rich Low_complexity Low_complexity 1 45 0 2 803 252 100 0 0 chr1 28675273 28675313 -168520119 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 803 14101 55 3 1 chr1 28675333 28677810 -168517622 - L1Md_F2 LINE L1 -12 6570 4091 2 803 34 55 0 0 chr1 28678160 28678215 -168517217 + AT_rich Low_complexity Low_complexity 1 55 0 2 803 24 53 0 0 chr1 28678573 28678611 -168516821 + AT_rich Low_complexity Low_complexity 1 38 0 2 803 263 232 0 29 chr1 28678941 28679043 -168516389 - Lx9 LINE L1 -127 7517 7419 2 803 2409 108 33 92 chr1 28679359 28679618 -168515814 - RLTR44B LTR ERVK -18 431 206 2 803 468 0 0 0 chr1 28679618 28679670 -168515762 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 803 2409 108 33 92 chr1 28679670 28679868 -168515564 - RLTR44B LTR ERVK -244 205 3 2 803 294 230 61 58 chr1 28679868 28680017 -168515415 + Lx5 LINE L1 6507 6597 -453 2 803 387 0 0 0 chr1 28680019 28680062 -168515370 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 803 411 21 0 0 chr1 28680062 28680109 -168515323 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 803 269 337 0 38 chr1 28681116 28681221 -168514211 + PB1D10 SINE Alu 2 102 -15 3 803 216 0 0 0 chr1 28682567 28682591 -168512841 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 803 667 132 7 22 chr1 28683020 28683159 -168512273 - L1Md_A LINE L1 0 6582 6446 3 803 1029 238 5 0 chr1 28683941 28684164 -168511268 - URR1B DNA MER1_type 0 225 2 3 803 259 292 0 0 chr1 28684181 28684270 -168511162 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 803 369 62 0 0 chr1 28684601 28684649 -168510783 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 803 597 28 0 0 chr1 28684740 28684811 -168510621 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 3 803 288 0 0 0 chr1 28684971 28685003 -168510429 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 803 1142 75 7 0 chr1 28685012 28685158 -168510274 + B1_Mus2 SINE Alu 1 147 0 3 803 558 145 0 0 chr1 28685158 28685282 -168510150 + (A)n Simple_repeat Simple_repeat 1 124 0 3 803 641 113 21 7 chr1 28685403 28685545 -168509887 + (TG)n Simple_repeat Simple_repeat 2 145 0 3 803 35 41 0 0 chr1 28686644 28686693 -168508739 + AT_rich Low_complexity Low_complexity 1 49 0 3 803 423 68 0 0 chr1 28688473 28688532 -168506900 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 803 235 120 100 0 chr1 28688687 28688737 -168506695 - Lx9 LINE L1 -177 7467 7413 3 803 7168 4 0 0 chr1 28689291 28690088 -168505344 + L1Md_A LINE L1 5786 6582 0 3 803 189 0 0 0 chr1 28690173 28690194 -168505238 + (A)n Simple_repeat Simple_repeat 1 21 0 3 803 482 153 2 10 chr1 28690866 28690954 -168504478 + MTC LTR MaLR 334 419 -2 3 803 253 149 30 0 chr1 28692685 28692752 -168502680 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 803 1141 257 198 6 chr1 28694007 28694516 -168500916 + Lx9 LINE L1 7030 7636 -8 3 803 570 274 64 55 chr1 28695194 28695430 -168500002 + Lx6 LINE L1 7223 7460 0 3 803 206 105 26 0 chr1 28695445 28695483 -168499949 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 803 7749 50 6 2 chr1 28695664 28697071 -168498361 - L1Md_F2 LINE L1 0 6582 5174 3 803 996 89 0 108 chr1 28697073 28697249 -168498183 + L1_Mus2 LINE L1 6410 6566 0 3 803 248 154 19 0 chr1 28698294 28698346 -168497086 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 803 28 61 0 0 chr1 28699019 28699068 -168496364 + AT_rich Low_complexity Low_complexity 1 49 0 3 803 346 300 39 30 chr1 28699775 28700005 -168495427 - Charlie1b DNA MER1_type -136 387 156 3 803 213 39 0 0 chr1 28700219 28700245 -168495187 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 3 803 282 288 12 12 chr1 28700270 28700351 -168495081 - Lx6 LINE L1 -105 7355 7275 3 803 3295 273 73 39 chr1 28700386 28701607 -168493825 + L1_Mur3 LINE L1 50 1312 -6400 3 803 29164 144 34 14 chr1 28701606 28704716 -168490716 + L1_Mus1 LINE L1 98 3131 -2752 3 803 216 86 0 0 chr1 28704716 28704751 -168490681 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 100 29164 122 12 3 chr1 28704751 28705801 -168489631 + L1_Mus1 LINE L1 3132 4199 -1684 3 804 6880 75 3 16 chr1 28705801 28706705 -168488727 + RLTR13B1 LTR ERVK 1 893 0 3 804 29164 106 19 2 chr1 28706705 28709050 -168486382 + L1_Mus1 LINE L1 4200 6567 0 3 804 858 221 19 27 chr1 28709109 28709370 -168486062 + L1_Mur3 LINE L1 1319 1577 -4303 3 804 314 252 9 9 chr1 28709369 28709477 -168485955 + L1_Mur3 LINE L1 2540 2647 -3233 3 804 370 178 47 62 chr1 28709688 28709838 -168485594 - ORR1A2 LTR MaLR -248 146 1 3 804 35 41 0 0 chr1 28709989 28710038 -168485394 + AT_rich Low_complexity Low_complexity 1 49 0 3 804 1612 232 75 67 chr1 28711343 28711837 -168483595 - Lx6 LINE L1 -9 7451 6954 3 804 237 280 0 0 chr1 28712262 28712312 -168483120 - Lx7 LINE L1 -1041 6655 6606 3 804 1796 118 10 7 chr1 28713589 28713878 -168481554 - L1_Mus2 LINE L1 -17 6549 6260 3 804 16660 122 4 9 chr1 28713878 28716520 -168478912 - L1Md_F LINE L1 -942 4941 2314 3 804 2355 195 52 39 chr1 28716519 28717058 -168478374 - L1Md_F LINE L1 -5396 1220 675 3 804 228 329 0 0 chr1 28717156 28717235 -168478197 - L1VL1 LINE L1 -6016 406 328 3 804 282 21 64 0 chr1 28717261 28717308 -168478124 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 3 804 313 176 14 68 chr1 28717310 28717383 -168478049 - L1VL1 LINE L1 -6296 126 58 3 804 255 308 168 12 chr1 28717410 28717571 -168477861 - MLT2B4 LTR ERVL -3 564 379 3 804 4483 8 0 0 chr1 28717604 28718097 -168477335 + MT2_Mm LTR ERVL 1 493 0 3 804 270 217 0 67 chr1 28718103 28718192 -168477240 + GA-rich Low_complexity Low_complexity 2 84 0 3 804 388 332 91 9 chr1 28718205 28718424 -168477008 - MLT2B4 LTR ERVL -317 239 3 3 804 23 33 0 0 chr1 28719127 28719157 -168476275 + AT_rich Low_complexity Low_complexity 1 30 0 3 804 1428 159 12 4 chr1 28719521 28719773 -168475659 + Lx LINE L1 6394 6647 -7 3 804 449 312 82 115 chr1 28720144 28720448 -168474984 + LTR40b LTR ERVL 89 382 -80 3 804 2554 23 10 7 chr1 28721296 28721605 -168473827 + L1Md_A LINE L1 6272 6581 -1 3 804 292 165 18 55 chr1 28721808 28721917 -168473515 + (TAAA)n Simple_repeat Simple_repeat 3 107 0 3 804 561 312 105 5 chr1 28722673 28722863 -168472569 - B3 SINE B2 0 216 8 3 804 338 42 21 0 chr1 28722874 28722922 -168472510 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 804 540 56 0 0 chr1 28722922 28722994 -168472438 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 804 4704 15 0 0 chr1 28724627 28725159 -168470273 - L1Md_T LINE L1 0 6582 6051 3 804 4291 7 0 0 chr1 28725159 28725806 -168469626 + L1Md_T LINE L1 5419 6065 -517 3 804 3545 0 0 0 chr1 28726774 28727168 -168468264 + L1Md_T LINE L1 6189 6582 0 3 804 820 235 9 74 chr1 28728726 28728956 -168466476 - Lx5 LINE L1 -65 6985 6771 3 804 236 270 73 98 chr1 28729261 28729328 -168466104 - RLTR20C LTR ERVK -42 518 452 3 804 411 78 0 0 chr1 28729328 28729392 -168466040 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 804 1101 242 278 53 chr1 28729392 28729765 -168465667 - RLTR20C LTR ERVK -106 472 1 3 804 22 35 0 0 chr1 28729960 28729989 -168465443 + AT_rich Low_complexity Low_complexity 1 29 0 3 804 345 82 0 0 chr1 28730175 28730224 -168465208 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 804 1460 286 32 76 chr1 28730224 28730792 -168464640 - RMER15 LTR ERVL -11 564 22 3 804 229 250 71 29 chr1 28730861 28730931 -168464501 - B3A SINE B2 -45 171 99 3 804 279 71 0 0 chr1 28731478 28731520 -168463912 + (T)n Simple_repeat Simple_repeat 1 42 0 3 804 261 309 35 35 chr1 28731765 28731879 -168463553 - L2a LINE L2 -1 3425 3312 3 804 2421 126 13 171 chr1 28732216 28732743 -168462689 + RLTR41 LTR ERV1 1 444 -2 3 804 318 26 0 0 chr1 28732935 28732974 -168462458 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 804 38 39 0 0 chr1 28733509 28733561 -168461871 + AT_rich Low_complexity Low_complexity 1 52 0 3 804 3369 45 0 0 chr1 28733616 28734012 -168461420 - MTA_Mm LTR MaLR 0 396 1 3 804 22 56 0 0 chr1 28734030 28734066 -168461366 + AT_rich Low_complexity Low_complexity 1 36 0 3 804 261 57 0 0 chr1 28734133 28734168 -168461264 + (ATG)n Simple_repeat Simple_repeat 3 37 0 3 804 199 250 28 119 chr1 28734384 28734493 -168460939 - MIR SINE MIR -34 228 130 3 804 3791 148 20 14 chr1 28735165 28735814 -168459618 + Lx3_Mus LINE L1 6357 7009 0 3 804 4450 284 89 26 chr1 28737070 28738692 -168456740 - Lx6 LINE L1 -1 7459 5737 3 804 22 70 0 0 chr1 28738739 28738782 -168456650 + AT_rich Low_complexity Low_complexity 1 43 0 3 804 2742 59 0 3 chr1 28738887 28739245 -168456187 + L1Md_F2 LINE L1 6218 6574 -8 3 804 220 139 70 0 chr1 28739461 28739504 -168455928 + T-rich Low_complexity Low_complexity 5 50 0 3 804 258 32 0 0 chr1 28740657 28740688 -168454744 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 804 616 319 42 105 chr1 28740735 28741163 -168454269 - Lx8 LINE L1 -24 7449 7049 3 804 581 39 0 0 chr1 28741163 28741240 -168454192 - MusHAL1 LINE L1 -2277 435 359 3 804 3652 132 83 6 chr1 28742864 28743490 -168451942 + Lx2 LINE L1 6324 6997 0 3 804 1823 81 44 0 chr1 28743731 28744002 -168451430 - L1_Mm LINE L1 -4002 1881 1599 3 804 1700 80 0 0 chr1 28744004 28744228 -168451204 + L1_Mus1 LINE L1 6342 6565 -2 3 804 259 236 110 22 chr1 28744267 28744358 -168451074 + Lx9 LINE L1 6390 6488 -1156 3 804 655 318 120 65 chr1 28744394 28745027 -168450405 + Lx9 LINE L1 6704 7371 -273 3 804 237 33 0 0 chr1 28745165 28745195 -168450237 + (T)n Simple_repeat Simple_repeat 1 30 0 3 804 663 129 13 25 chr1 28745525 28745684 -168449748 + (TA)n Simple_repeat Simple_repeat 2 158 0 3 804 22 0 0 0 chr1 28746012 28746034 -168449398 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 22 0 0 0 chr1 28746061 28746083 -168449349 + AT_rich Low_complexity Low_complexity 1 22 0 3 804 23472 126 25 5 chr1 28746831 28748004 -168447428 + L1Md_F LINE L1 381 1553 -4330 3 804 1431 70 5 0 chr1 28748004 28748190 -168447242 + B2_Mm1t SINE B2 2 188 -5 3 804 23472 96 9 10 chr1 28748190 28751338 -168444094 + L1Md_F LINE L1 1554 4710 -1173 3 804 1269 97 5 10 chr1 28751338 28751535 -168443897 + L1Md_F2 LINE L1 6387 6582 0 3 804 5122 139 21 11 chr1 28752027 28752887 -168442545 - Lx3A LINE L1 -3 6978 6110 3 804 627 301 95 25 chr1 28752889 28753451 -168441981 - L1MC3 LINE L1 -192 6141 5533 3 804 1160 285 37 24 chr1 28753468 28753842 -168441590 - MTE2a LTR MaLR 0 379 1 3 804 347 312 80 9 chr1 28754038 28754151 -168441281 + RSINE1 SINE B4 11 131 -34 3 804 536 219 204 0 chr1 28754280 28754417 -168441015 + RMER13A LTR ERVK 696 860 0 3 804 1247 239 44 11 chr1 28755016 28755376 -168440056 + Lx9 LINE L1 7257 7628 -16 3 804 308 288 58 50 chr1 28755479 28755618 -168439814 + L1M4 LINE L1 2479 2618 -3528 3 804 347 41 20 0 chr1 28755849 28755898 -168439534 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 804 560 229 82 22 chr1 28757338 28757472 -168437960 + B1_Mur1 SINE Alu 8 149 0 3 804 625 260 229 28 chr1 28757649 28758120 -168437312 + Lx9 LINE L1 6926 7491 -153 3 804 23 0 0 0 chr1 28758802 28758825 -168436607 + AT_rich Low_complexity Low_complexity 1 23 0 3 804 332 343 0 54 chr1 28758988 28759099 -168436333 - PB1D10 SINE Alu -7 110 6 4 804 360 0 0 0 chr1 28759311 28759351 -168436081 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 804 503 382 6 0 chr1 28759365 28759522 -168435910 - RSINE1 SINE B4 -6 159 2 4 804 27 62 0 0 chr1 28759635 28759683 -168435749 + AT_rich Low_complexity Low_complexity 1 48 0 4 804 5705 144 28 25 chr1 28760262 28761272 -168434160 + Lx2 LINE L1 5983 6995 -2 4 804 235 267 44 55 chr1 28761643 28761734 -168433698 + B3 SINE B2 127 216 0 4 804 378 349 68 0 chr1 28763522 28763654 -168431778 + RSINE1 SINE B4 5 145 -20 4 804 24 32 0 0 chr1 28763885 28763916 -168431516 + AT_rich Low_complexity Low_complexity 1 31 0 4 804 353 291 22 15 chr1 28764299 28764435 -168430997 + GA-rich Low_complexity Low_complexity 2 138 0 4 804 4440 47 4 0 chr1 28764441 28764999 -168430433 + L1Md_F2 LINE L1 6028 6582 0 4 804 225 0 0 0 chr1 28765005 28765030 -168430402 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 804 189 0 0 0 chr1 28765030 28765050 -168430382 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 804 630 91 0 0 chr1 28765079 28765178 -168430254 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 4 804 618 68 0 0 chr1 28765210 28765298 -168430134 + (TC)n Simple_repeat Simple_repeat 2 89 0 4 804 3232 204 58 102 chr1 28765358 28765935 -168429497 - RMER17B LTR ERVK -3 955 429 4 804 888 37 0 0 chr1 28765935 28766043 -168429389 + (GA)n Simple_repeat Simple_repeat 2 109 0 4 804 3232 204 58 102 chr1 28766043 28766464 -168428968 - RMER17B LTR ERVK -530 428 1 4 804 228 316 114 25 chr1 28768202 28768526 -168426906 + L1MD LINE L1 2730 3082 -3064 4 804 459 0 0 0 chr1 28768736 28768787 -168426645 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 804 264 211 0 0 chr1 28769850 28769926 -168425506 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 804 349 125 18 0 chr1 28769929 28769985 -168425447 - HAL1-3A_ME LINE L1 -831 2027 1971 4 804 1194 293 74 10 chr1 28770733 28771123 -168424309 + MTD LTR MaLR 5 419 0 4 804 1539 282 95 86 chr1 28771131 28772126 -168423306 + MTD-int LTR MaLR 8 995 -103 4 804 1326 85 11 0 chr1 28772126 28772303 -168423129 - B2_Mm1t SINE B2 -14 179 1 4 804 1370 284 100 136 chr1 28772303 28772436 -168422996 + MTD-int LTR MaLR 996 1095 -3 4 804 992 215 99 172 chr1 28772439 28772612 -168422820 + MTD LTR MaLR 1 200 -219 4 804 5881 56 8 0 chr1 28772612 28773358 -168422074 + L1_Mus1 LINE L1 5807 6558 -9 4 804 992 215 99 172 chr1 28773358 28773627 -168421805 + MTD LTR MaLR 201 411 -8 4 804 255 31 0 0 chr1 28773763 28773795 -168421637 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 804 726 109 0 0 chr1 28774142 28774252 -168421180 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 4 804 225 204 0 0 chr1 28774323 28774367 -168421065 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 804 369 0 0 0 chr1 28775437 28775478 -168419954 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 804 4653 129 36 9 chr1 28778708 28779458 -168415974 + Lx2A LINE L1 6239 7008 0 4 804 2918 265 45 12 chr1 28780159 28780922 -168414510 + Lx5 LINE L1 6258 7045 -5 4 804 255 122 0 0 chr1 28781983 28782032 -168413400 + (A)n Simple_repeat Simple_repeat 1 49 0 4 804 4387 129 70 24 chr1 28782635 28783397 -168412035 + Lx LINE L1 5858 6654 0 4 804 513 0 0 0 chr1 28785221 28785278 -168410154 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 804 1874 136 6 59 chr1 28786000 28786337 -168409095 + ORR1A2 LTR MaLR 9 327 0 4 804 267 254 143 42 chr1 28788159 28788278 -168407154 + MIR SINE MIR 78 208 -54 4 804 195 100 0 0 chr1 28788912 28788942 -168406490 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 804 476 263 95 66 chr1 28788949 28789192 -168406240 + MER67D LTR ERV1 5 264 -447 4 804 29 60 0 0 chr1 28789641 28789691 -168405741 + AT_rich Low_complexity Low_complexity 1 50 0 4 804 927 169 154 0 chr1 28789796 28789991 -168405441 + URR1A DNA MER1_type 2 226 0 4 804 207 0 0 0 chr1 28790457 28790480 -168404952 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 804 1200 199 107 58 chr1 28791090 28791484 -168403948 - Lx4B LINE L1 -736 6322 5910 4 804 4483 83 2 2 chr1 28791491 28792085 -168403347 - L1_Mus2 LINE L1 0 6566 5973 4 804 261 146 127 0 chr1 28792571 28792626 -168402806 - MLT1A LTR MaLR 0 374 313 4 804 583 302 87 71 chr1 28792789 28793042 -168402390 - B4A SINE B4 -35 257 1 4 804 277 197 0 26 chr1 28793056 28793134 -168402298 + GA-rich Low_complexity Low_complexity 2 77 0 4 804 2753 239 29 38 chr1 28793749 28794082 -168401350 + RMER1B Other Other 388 722 -344 4 804 948 88 7 0 chr1 28794082 28794230 -168401202 + L1Md_F2 LINE L1 6434 6582 0 4 804 2753 239 29 38 chr1 28794230 28794579 -168400853 + RMER1B Other Other 723 1064 -2 4 804 270 251 228 73 chr1 28794839 28795045 -168400387 - RMER15 LTR ERVL -13 562 325 4 804 183 100 0 0 chr1 28796558 28796588 -168398844 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 804 2212 157 21 0 chr1 28796968 28797357 -168398075 - Lx2 LINE L1 -4 6993 6597 4 804 1789 174 97 3 chr1 28797359 28797729 -168397703 - Lx2 LINE L1 -571 6426 6022 4 804 793 191 7 7 chr1 28798408 28798561 -168396871 - URR1A DNA MER1_type -7 219 67 4 804 296 274 80 54 chr1 28798594 28798706 -168396726 - MER67D LTR ERV1 -395 119 5 4 804 642 293 62 11 chr1 28799262 28799438 -168395994 - B3 SINE B2 -24 192 8 4 804 449 285 50 71 chr1 28799549 28799689 -168395743 - B3A SINE B2 -61 137 1 4 804 1056 239 12 16 chr1 28799724 28799979 -168395453 - Lx4B LINE L1 -1 7057 6804 4 804 535 132 0 0 chr1 28799977 28800060 -168395372 + Lx4B LINE L1 5841 5923 -1135 4 804 7003 84 4 18 chr1 28800060 28800661 -168394771 + L1_Mus2 LINE L1 5058 5657 -909 4 804 975 66 0 56 chr1 28800661 28800821 -168394611 + L1Md_F2 LINE L1 6432 6582 0 4 804 7003 92 5 14 chr1 28800821 28801733 -168393699 + L1_Mus2 LINE L1 5658 6562 -4 4 804 1019 317 59 30 chr1 28801836 28802242 -168393190 + MTD LTR MaLR 2 419 0 4 804 5311 115 23 12 chr1 28802324 28803154 -168392278 + Lx3_Mus LINE L1 6147 6985 -24 4 804 264 59 0 0 chr1 28803155 28803189 -168392243 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 4 804 189 0 0 0 chr1 28803309 28803330 -168392102 + (A)n Simple_repeat Simple_repeat 1 21 0 4 804 28 86 0 0 chr1 28803714 28803784 -168391648 + AT_rich Low_complexity Low_complexity 1 70 0 4 804 719 106 9 0 chr1 28803913 28804026 -168391406 - Lx2 LINE L1 -1 6996 6883 4 804 324 0 0 0 chr1 28804898 28804934 -168390498 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 804 26 0 0 0 chr1 28804942 28804968 -168390464 + AT_rich Low_complexity Low_complexity 1 26 0 4 804 318 329 99 6 chr1 28804985 28805147 -168390285 - RMER15 LTR ERVL -12 563 387 4 804 420 136 62 0 chr1 28805816 28805897 -168389535 - MTC-int LTR MaLR -1171 87 2 4 804 1864 208 65 5 chr1 28805896 28806293 -168389139 - MTC LTR MaLR 0 421 1 4 804 1252 339 75 36 chr1 28806441 28807254 -168388178 + RMER15-int LTR ERVL 906 1750 -3249 4 804 3371 33 2 2 chr1 28807486 28807882 -168387550 - MTA_Mm LTR MaLR 0 396 1 4 804 769 313 20 74 chr1 28808389 28808686 -168386746 + MT2A LTR ERVL 66 346 -187 4 804 449 381 42 7 chr1 28808882 28809170 -168386262 + MTE-int LTR MaLR 1275 1572 -8 4 804 1455 224 93 52 chr1 28809284 28809727 -168385705 + RLTR25B LTR ERVK 393 853 -175 4 804 321 26 0 0 chr1 28809740 28809778 -168385654 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 4 804 703 245 65 88 chr1 28810121 28810165 -168385267 + RLTR25B LTR ERVK 775 824 -204 4 804 543 31 0 0 chr1 28810165 28810230 -168385202 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 804 703 245 65 88 chr1 28810230 28810445 -168384987 + RLTR25B LTR ERVK 825 1028 0 4 804 6605 122 8 12 chr1 28810514 28811527 -168383905 - L1_Mus4 LINE L1 -6 6630 5622 4 804 4893 174 13 14 chr1 28811500 28812440 -168382992 + L1_Mus4 LINE L1 4709 5645 -921 4 804 295 41 20 20 chr1 28812660 28812710 -168382722 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 4 804 23 33 0 0 chr1 28812931 28812961 -168382471 + AT_rich Low_complexity Low_complexity 1 30 0 4 804 228 361 0 0 chr1 28813367 28813428 -168382004 - ID4_ SINE ID -19 64 4 4 804 360 210 0 0 chr1 28813474 28813536 -168381896 + U4 snRNA snRNA 1 62 -83 4 804 227 328 0 8 chr1 28814707 28814827 -168380605 + (CTA)n Simple_repeat Simple_repeat 3 121 0 4 804 240 333 34 92 chr1 28815733 28815852 -168379580 - PB1D9 SINE Alu -2 118 7 4 804 447 19 0 0 chr1 28815959 28816011 -168379421 + (TTC)n Simple_repeat Simple_repeat 2 53 0 4 804 294 243 129 0 chr1 28816301 28816371 -168379061 - Lx6 LINE L1 -1001 6459 6381 4 804 2193 263 72 13 chr1 28816411 28817035 -168378397 + Lx6 LINE L1 6441 7101 -359 4 804 21 36 0 0 chr1 28817101 28817129 -168378303 + AT_rich Low_complexity Low_complexity 1 28 0 4 804 23 33 0 0 chr1 28817195 28817225 -168378207 + AT_rich Low_complexity Low_complexity 1 30 0 4 804 21 71 0 0 chr1 28817270 28817312 -168378120 + AT_rich Low_complexity Low_complexity 1 42 0 4 804 30 27 0 0 chr1 28818345 28818382 -168377050 + AT_rich Low_complexity Low_complexity 1 37 0 4 804 307 300 70 0 chr1 28818449 28818549 -168376883 - U6 snRNA snRNA 0 107 1 4 804 21 0 0 0 chr1 28819157 28819178 -168376254 + AT_rich Low_complexity Low_complexity 1 21 0 4 804 24 53 0 0 chr1 28819372 28819410 -168376022 + AT_rich Low_complexity Low_complexity 1 38 0 4 804 222 270 0 0 chr1 28819447 28819510 -168375922 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 4 804 1016 196 4 82 chr1 28820228 28820472 -168374960 - URR1B DNA MER1_type 0 225 1 4 804 1558 199 117 0 chr1 28820649 28820991 -168374441 - RLTR14 LTR ERV1 0 382 1 4 804 322 21 0 41 chr1 28821996 28822045 -168373387 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 804 406 82 68 0 chr1 28822879 28822952 -168372480 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 4 804 29 28 0 0 chr1 28823064 28823100 -168372332 + AT_rich Low_complexity Low_complexity 1 36 0 4 804 6071 128 15 10 chr1 28823533 28824514 -168370918 + Lx3_Mus LINE L1 6014 6999 -10 4 804 12381 171 141 50 chr1 28826150 28826846 -168368586 + L1_Mus3 LINE L1 2000 2788 -3850 4 804 1040 52 7 0 chr1 28826846 28826981 -168368451 + B1_Mm SINE Alu 12 147 0 5 804 12381 171 141 50 chr1 28826981 28830369 -168365063 + L1_Mus3 LINE L1 2789 6631 -7 4 804 7475 201 107 8 chr1 28830383 28832378 -168363054 + L1_Mur1 LINE L1 2225 4417 -1469 5 804 396 0 0 0 chr1 28832647 28832691 -168362741 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 804 401 362 24 17 chr1 28832691 28832983 -168362449 - L1M2 LINE L1 -529 5771 5478 5 804 504 0 0 0 chr1 28835748 28835804 -168359628 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 805 2332 197 102 17 chr1 28836256 28836793 -168358639 - RMER4B LTR ERVK 0 585 3 5 805 2333 166 4 66 chr1 28837946 28838431 -168357001 - Lx LINE L1 -26 6628 6174 5 805 7443 169 15 27 chr1 28838431 28840656 -168354776 - Lx2B LINE L1 -277 6723 4528 5 805 3638 86 6 2 chr1 28840656 28841156 -168354276 - L1_Mus1 LINE L1 0 6567 6066 5 805 7443 181 8 45 chr1 28841156 28841275 -168354157 - Lx2B LINE L1 -1350 4527 4409 5 805 657 303 9 9 chr1 28841298 28841535 -168353897 - Lx5 LINE L1 -778 6682 6228 5 805 387 250 20 10 chr1 28841640 28841742 -168353690 + Lx6 LINE L1 6751 6843 -617 5 805 684 251 36 10 chr1 28841745 28841938 -168353494 + Lx6 LINE L1 7223 7420 -40 5 805 30 27 0 0 chr1 28841948 28841985 -168353447 + AT_rich Low_complexity Low_complexity 1 37 0 5 805 186 103 0 0 chr1 28842260 28842289 -168353143 + (GAGAA)n Simple_repeat Simple_repeat 4 32 0 5 805 938 60 22 0 chr1 28842426 28842560 -168352872 + L1Md_F2 LINE L1 6434 6570 -12 5 805 427 269 89 53 chr1 28842769 28842938 -168352494 - RMER12 LTR ERVK -134 1188 1014 5 805 1817 108 0 18 chr1 28843975 28844259 -168351173 - L1Md_F2 LINE L1 0 6582 6304 5 805 3107 155 39 60 chr1 28844259 28844487 -168350945 - Lx2B LINE L1 -19 6981 6748 5 805 405 0 0 0 chr1 28844487 28844532 -168350900 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 805 399 21 0 0 chr1 28844532 28844579 -168350853 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 805 3107 155 39 60 chr1 28844579 28844947 -168350485 - Lx2B LINE L1 -253 6747 6398 5 805 201 147 0 0 chr1 28844949 28844983 -168350449 + (T)n Simple_repeat Simple_repeat 1 34 0 5 805 855 53 0 9 chr1 28845303 28845417 -168350015 + B1_Mus1 SINE Alu 35 147 -1 5 805 1424 248 79 65 chr1 28845418 28845910 -168349522 - Lx7 LINE L1 -293 7403 6905 5 805 536 298 0 0 chr1 28845918 28846059 -168349373 - B1_Mur1 SINE Alu -7 142 2 5 805 3460 290 77 19 chr1 28847427 28847999 -168347433 + Lx9 LINE L1 6084 6710 -934 5 805 387 0 0 0 chr1 28847999 28848042 -168347390 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 805 3460 281 75 18 chr1 28848042 28848906 -168346526 + Lx9 LINE L1 6711 7642 -2 5 805 243 215 0 30 chr1 28848960 28849027 -168346405 + L1MC4 LINE L1 7517 7581 -461 5 805 335 288 68 6 chr1 28849684 28849845 -168345587 - L1MC1 LINE L1 -434 5899 5729 5 805 639 39 0 0 chr1 28849845 28849923 -168345509 + (CATA)n Simple_repeat Simple_repeat 1 78 0 5 805 347 171 13 0 chr1 28849931 28850007 -168345425 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 805 980 264 344 0 chr1 28850515 28850829 -168344603 + Lx9 LINE L1 6352 6773 -871 5 805 23 54 0 0 chr1 28851040 28851077 -168344355 + AT_rich Low_complexity Low_complexity 1 37 0 5 805 458 61 15 0 chr1 28851552 28851618 -168343814 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 805 2107 258 8 70 chr1 28851629 28852010 -168343422 - Lx9 LINE L1 -192 7452 7111 5 805 3561 53 2 11 chr1 28852010 28852464 -168342968 - L1Md_F2 LINE L1 0 6582 6133 5 805 2107 258 8 70 chr1 28852464 28852737 -168342695 - Lx9 LINE L1 -534 7110 6839 5 805 22 56 0 0 chr1 28853345 28853381 -168342051 + AT_rich Low_complexity Low_complexity 1 36 0 5 805 10761 79 8 15 chr1 28853775 28855998 -168339434 - L1Md_F2 LINE L1 0 6582 4387 5 805 286 170 0 0 chr1 28855996 28856043 -168339389 - L1Md_F LINE L1 -6399 120 74 5 805 282 336 40 14 chr1 28856065 28856213 -168339219 - L1MC3 LINE L1 -260 7525 7374 5 805 291 308 0 0 chr1 28856675 28856753 -168338679 + B3A SINE B2 4 81 -117 5 805 4061 48 4 8 chr1 28857386 28857888 -168337544 + RLTR1C LTR ERV1 1 500 -3 5 805 207 0 0 0 chr1 28860001 28860024 -168335408 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 805 1384 254 153 30 chr1 28860176 28860647 -168334785 - RMER15 LTR ERVL 0 575 47 5 805 27 0 0 0 chr1 28860735 28860762 -168334670 + AT_rich Low_complexity Low_complexity 1 27 0 5 805 394 346 28 6 chr1 28861014 28861191 -168334241 + B3A SINE B2 2 182 -16 5 805 234 0 0 0 chr1 28861558 28861584 -168333848 + (T)n Simple_repeat Simple_repeat 1 26 0 5 805 1171 54 0 0 chr1 28861584 28861731 -168333701 - B1_Mus2 SINE Alu 0 147 1 5 805 246 128 0 0 chr1 28861958 28861997 -168333435 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 805 264 247 61 12 chr1 28862347 28862429 -168333003 + LTR33A_ LTR ERVL 430 515 -16 5 805 258 105 0 0 chr1 28862966 28863004 -168332428 + (A)n Simple_repeat Simple_repeat 1 38 0 5 805 232 354 0 0 chr1 28863192 28863274 -168332158 + CT-rich Low_complexity Low_complexity 3 84 0 5 805 908 226 96 130 chr1 28864106 28864522 -168330910 + RMER10A LTR ERVL 1 402 -40 5 805 868 298 28 0 chr1 28864582 28864800 -168330632 + Lx5 LINE L1 6675 6898 -152 5 805 291 270 34 0 chr1 28864993 28865082 -168330350 + Lx5 LINE L1 6917 7008 -42 5 805 27 0 0 0 chr1 28866583 28866610 -168328822 + AT_rich Low_complexity Low_complexity 1 27 0 5 805 23 0 0 0 chr1 28867080 28867103 -168328329 + AT_rich Low_complexity Low_complexity 1 23 0 5 805 1715 220 77 14 chr1 28867232 28867661 -168327771 - RMER6D LTR ERVK 0 720 265 5 805 22 35 0 0 chr1 28868357 28868386 -168327046 + AT_rich Low_complexity Low_complexity 1 29 0 5 805 438 324 39 11 chr1 28869090 28869271 -168326161 - Lx6 LINE L1 -26 7434 7249 5 805 489 47 0 0 chr1 28869393 28869457 -168325975 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 805 521 293 16 0 chr1 28869488 28869611 -168325821 - RSINE1 SINE B4 -38 127 3 5 805 190 194 0 31 chr1 28869614 28869678 -168325754 + CT-rich Low_complexity Low_complexity 4 65 0 5 805 24 0 0 0 chr1 28869844 28869868 -168325564 + AT_rich Low_complexity Low_complexity 1 24 0 5 805 289 343 81 17 chr1 28869982 28870154 -168325278 + MIRb SINE MIR 59 241 -27 5 805 383 373 81 14 chr1 28870479 28870744 -168324688 - L2a LINE L2 -175 3200 2919 5 805 346 358 27 0 chr1 28871743 28871891 -168323541 - Lx8 LINE L1 -283 7190 7039 5 805 443 181 17 62 chr1 28871947 28872124 -168323308 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 5 805 210 37 0 0 chr1 28872299 28872326 -168323106 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 805 236 196 19 19 chr1 28872519 28872571 -168322861 - MER58B DNA MER1_type -105 236 185 5 805 194 62 31 0 chr1 28872578 28872610 -168322822 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 805 203 358 73 9 chr1 28872769 28872879 -168322553 + MIRc SINE MIR 7 123 -145 5 805 246 62 0 0 chr1 28873419 28873451 -168321981 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 805 183 218 55 0 chr1 28873977 28874032 -168321400 - L2a LINE L2 0 3426 3369 5 805 419 0 0 0 chr1 28874131 28874187 -168321245 + L1_Mus3 LINE L1 6578 6633 -5 5 805 1457 325 62 43 chr1 28874224 28875086 -168320346 - Lx8 LINE L1 -4 7469 6592 5 805 31 26 0 0 chr1 28875620 28875658 -168319774 + AT_rich Low_complexity Low_complexity 1 38 0 5 805 21 57 0 0 chr1 28877451 28877486 -168317946 + AT_rich Low_complexity Low_complexity 1 35 0 5 805 333 82 0 0 chr1 28877996 28878045 -168317387 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 805 198 191 0 0 chr1 28878047 28878089 -168317343 + GA-rich Low_complexity Low_complexity 1 42 0 5 805 452 296 15 0 chr1 28878368 28878500 -168316932 + Lx9 LINE L1 7204 7337 -307 5 805 204 40 0 0 chr1 28878604 28878629 -168316803 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 5 805 2853 226 37 23 chr1 28878645 28879371 -168316061 - Lx2B LINE L1 -4 7054 6212 5 805 249 159 0 0 chr1 28880562 28880606 -168314826 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 805 455 147 10 0 chr1 28880605 28880707 -168314725 + GA-rich Low_complexity Low_complexity 1 103 0 5 805 889 127 6 6 chr1 28881845 28882003 -168313429 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 5 805 5891 185 12 5 chr1 28882095 28883285 -168312147 + L1_Mur2 LINE L1 3564 4761 -1116 5 805 202 143 29 0 chr1 28883321 28883356 -168312076 + A-rich Low_complexity Low_complexity 3 38 0 5 805 822 175 0 17 chr1 28883356 28883536 -168311896 + GA-rich Low_complexity Low_complexity 3 179 0 5 805 22 35 0 0 chr1 28883608 28883637 -168311795 + AT_rich Low_complexity Low_complexity 1 29 0 5 805 32 75 0 0 chr1 28883758 28883825 -168311607 + AT_rich Low_complexity Low_complexity 1 67 0 5 805 1328 240 130 13 chr1 28883865 28883998 -168311434 - Lx9 LINE L1 -4 7640 7497 5 805 684 94 0 0 chr1 28883998 28884104 -168311328 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 805 1328 240 130 13 chr1 28884104 28884439 -168310993 - Lx9 LINE L1 -148 7496 7118 5 805 2596 168 48 2 chr1 28884534 28885011 -168310421 - RLTR19 LTR ERVK 0 499 1 5 805 651 26 0 0 chr1 28885018 28885095 -168310337 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 805 300 27 0 0 chr1 28885095 28885131 -168310301 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 805 26 30 0 0 chr1 28886343 28886376 -168309056 + AT_rich Low_complexity Low_complexity 1 33 0 5 805 26 64 0 0 chr1 28886513 28886560 -168308872 + AT_rich Low_complexity Low_complexity 1 47 0 5 805 389 132 29 0 chr1 28886820 28886888 -168308544 - RLTR19 LTR ERVK -429 70 1 5 805 309 283 103 7 chr1 28887738 28887884 -168307548 - Lx8 LINE L1 -342 7131 6972 5 805 907 303 24 15 chr1 28887929 28888360 -168307072 - Lx8 LINE L1 -1547 5926 5511 5 805 697 290 29 0 chr1 28888434 28888641 -168306791 - Lx9 LINE L1 -180 7464 7252 5 805 307 271 55 65 chr1 28888662 28888879 -168306553 + Lx9 LINE L1 6032 6246 -1398 5 805 2041 248 163 3 chr1 28888931 28889558 -168305874 + Lx9 LINE L1 6329 7055 -589 5 805 504 305 54 71 chr1 28889555 28889922 -168305510 - L1_Mur3 LINE L1 -3394 2453 2086 5 805 429 20 0 0 chr1 28889922 28889972 -168305460 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 805 372 305 54 71 chr1 28889972 28890013 -168305419 - L1_Mur3 LINE L1 -3762 2085 2052 5 805 870 284 129 24 chr1 28890088 28890467 -168304965 + MTD LTR MaLR 1 419 0 6 805 238 254 16 0 chr1 28890549 28890612 -168304820 - L1_Mur3 LINE L1 -4023 1824 1761 5 805 363 257 10 0 chr1 28891266 28891367 -168304065 - Lx9 LINE L1 -7 7637 7536 6 805 45 79 0 0 chr1 28892188 28892289 -168303143 + AT_rich Low_complexity Low_complexity 1 101 0 6 805 25 51 0 0 chr1 28892503 28892542 -168302890 + AT_rich Low_complexity Low_complexity 1 39 0 6 805 803 274 67 28 chr1 28893319 28893679 -168301753 + ORR1D1 LTR MaLR 1 374 0 6 805 748 163 40 51 chr1 28896599 28896774 -168298658 - URR1A DNA MER1_type -2 224 52 6 805 277 279 21 75 chr1 28896758 28896851 -168298581 - B1F1 SINE Alu -46 103 16 6 805 2664 48 17 3 chr1 28896972 28897323 -168298109 - L1Md_F2 LINE L1 -2 6580 6225 6 805 390 101 0 0 chr1 28897802 28897871 -168297561 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 6 805 381 338 7 0 chr1 28898687 28898829 -168296603 + B1F1 SINE Alu 1 143 -6 6 805 327 127 77 31 chr1 28899164 28899229 -168296203 + HAL1-3A_ME LINE L1 1981 2048 -810 6 805 365 80 20 0 chr1 28899868 28899918 -168295514 - ORR1A4 LTR MaLR 0 329 279 6 805 1152 211 72 15 chr1 28900057 28900322 -168295110 - ORR1A4 LTR MaLR -49 280 1 6 805 354 371 0 7 chr1 28900581 28900722 -168294710 + B1_Mur2 SINE Alu 9 148 -1 6 805 987 87 72 0 chr1 28901013 28901151 -168294281 + B1_Mus1 SINE Alu 1 148 0 6 805 366 0 0 53 chr1 28901154 28901211 -168294221 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 805 26 50 0 0 chr1 28901914 28901954 -168293478 + AT_rich Low_complexity Low_complexity 1 40 0 6 805 26 0 0 0 chr1 28902156 28902182 -168293250 + AT_rich Low_complexity Low_complexity 1 26 0 6 805 8181 154 19 15 chr1 28902993 28905354 -168290078 + Lx2 LINE L1 4631 6997 0 6 805 1208 109 10 0 chr1 28906015 28906207 -168289225 + L1_Mus3 LINE L1 6445 6638 0 6 805 1756 147 0 0 chr1 28906318 28906584 -168288848 - L1_Mur1 LINE L1 -58 5828 5563 6 805 378 191 93 25 chr1 28906579 28906697 -168288735 + Lx3A LINE L1 6856 6981 0 6 805 210 37 0 0 chr1 28906699 28906726 -168288706 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 805 441 0 0 0 chr1 28906894 28906943 -168288489 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 805 222 91 0 0 chr1 28907245 28907278 -168288154 + (TTA)n Simple_repeat Simple_repeat 2 34 0 6 805 1035 88 0 0 chr1 28907915 28908063 -168287369 + (TCTA)n Simple_repeat Simple_repeat 4 151 0 6 805 748 181 15 0 chr1 28908063 28908196 -168287236 - B1_Mus1 SINE Alu -8 140 6 6 805 27 0 0 0 chr1 28910478 28910505 -168284927 + AT_rich Low_complexity Low_complexity 1 27 0 6 805 1067 84 0 6 chr1 28912187 28912366 -168283066 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 805 640 157 0 11 chr1 28912368 28912440 -168282992 + polypurine Low_complexity Low_complexity 3 74 0 6 805 1020 101 0 0 chr1 28912440 28912618 -168282814 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 805 640 157 0 11 chr1 28912618 28912639 -168282793 + polypurine Low_complexity Low_complexity 75 95 0 6 805 1095 106 0 0 chr1 28912639 28912819 -168282613 + (GGA)n Simple_repeat Simple_repeat 1 182 -184 6 805 1095 106 0 0 chr1 28912825 28913005 -168282427 + (GGA)n Simple_repeat Simple_repeat 183 366 0 6 805 640 157 0 11 chr1 28913005 28913083 -168282349 + polypurine Low_complexity Low_complexity 102 179 0 6 805 273 238 69 10 chr1 28913114 28913216 -168282216 + Lx9 LINE L1 7536 7643 -1 6 805 3899 160 52 17 chr1 28913563 28914275 -168281157 + RMER19A LTR ERVK 1 737 0 6 805 23 0 0 0 chr1 28914466 28914489 -168280943 + AT_rich Low_complexity Low_complexity 1 23 0 6 805 408 348 30 5 chr1 28914647 28914849 -168280583 - Lx9 LINE L1 -220 7424 7218 6 805 698 248 82 64 chr1 28915000 28915401 -168280031 + RMER20A LTR ERVK 1 417 -443 6 805 1862 121 208 28 chr1 28915848 28916204 -168279228 - RLTR9B2 LTR ERVK 0 420 1 6 805 348 358 88 66 chr1 28916204 28916351 -168279081 + L1MCa LINE L1 632 787 -5721 6 805 387 0 0 0 chr1 28916351 28916394 -168279038 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 6 805 348 358 88 66 chr1 28916394 28916823 -168278609 + L1MCa LINE L1 788 1221 -5287 6 805 365 321 25 43 chr1 28916942 28917219 -168278213 + L1MCa LINE L1 1375 1646 -4862 6 805 21 82 0 0 chr1 28917368 28917417 -168278015 + AT_rich Low_complexity Low_complexity 1 49 0 6 805 315 0 0 0 chr1 28917501 28917536 -168277896 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 805 315 146 0 0 chr1 28917536 28917591 -168277841 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 805 268 324 27 0 chr1 28917868 28917979 -168277453 + L1MCa LINE L1 5708 5821 -687 6 805 27 73 0 0 chr1 28918361 28918416 -168277016 + AT_rich Low_complexity Low_complexity 1 55 0 6 805 26 30 0 0 chr1 28918667 28918700 -168276732 + AT_rich Low_complexity Low_complexity 1 33 0 6 805 305 131 0 16 chr1 28919628 28919690 -168275742 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 805 322 319 129 29 chr1 28919691 28919830 -168275602 - B3A SINE B2 -36 162 10 6 805 443 160 59 37 chr1 28919914 28920050 -168275382 - Lx9 LINE L1 -1 7643 7505 6 805 253 239 45 0 chr1 28920073 28920161 -168275271 + (TA)n Simple_repeat Simple_repeat 1 92 0 6 805 3158 285 99 5 chr1 28920192 28921313 -168274119 - Lx9 LINE L1 -127 7517 6291 6 805 344 307 86 19 chr1 28921314 28921523 -168273909 + L1_Mur2 LINE L1 4346 4568 -1309 6 805 345 47 0 0 chr1 28921526 28921569 -168273863 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 805 1415 305 49 16 chr1 28921673 28922186 -168273246 - Lx7 LINE L1 -420 7276 6747 6 805 622 253 54 11 chr1 28922173 28922357 -168273075 + L1_Rod LINE L1 4556 4747 -1100 6 805 383 0 21 0 chr1 28922425 28922472 -168272960 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 6 805 222 37 0 0 chr1 28922507 28922534 -168272898 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 805 345 348 53 15 chr1 28922692 28922955 -168272477 - Lx9 LINE L1 -752 6892 6620 6 805 522 113 0 0 chr1 28923073 28923170 -168272262 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 805 24 32 0 0 chr1 28923268 28923299 -168272133 + AT_rich Low_complexity Low_complexity 1 31 0 6 805 25 83 0 0 chr1 28923326 28923386 -168272046 + AT_rich Low_complexity Low_complexity 1 60 0 6 805 2028 281 109 40 chr1 28923743 28923776 -168271656 - Lx9 LINE L1 -1 7643 7613 6 805 186 43 0 0 chr1 28923776 28923799 -168271633 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 6 805 2028 281 109 40 chr1 28923799 28924000 -168271432 - Lx9 LINE L1 -32 7612 7371 6 805 375 119 0 0 chr1 28924000 28924067 -168271365 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 805 2028 281 109 40 chr1 28924067 28924830 -168270602 - Lx9 LINE L1 -274 7370 6577 6 805 328 159 187 33 chr1 28924824 28924915 -168270517 + Lx9 LINE L1 6463 6567 -1077 6 805 22 0 0 0 chr1 28924927 28924949 -168270483 + AT_rich Low_complexity Low_complexity 1 22 0 6 805 444 150 0 0 chr1 28925612 28925692 -168269740 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 805 429 20 0 0 chr1 28926587 28926637 -168268795 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 805 379 303 69 50 chr1 28928364 28928524 -168266908 + RLTR18 LTR ERVK 31 193 -423 6 805 1428 302 73 96 chr1 28928681 28929484 -168265948 - Lx8 LINE L1 -283 7190 6406 6 805 23 0 0 0 chr1 28929657 28929680 -168265752 + AT_rich Low_complexity Low_complexity 1 23 0 6 805 311 250 80 13 chr1 28929750 28929900 -168265532 - Charlie2b DNA MER1_type -44 2738 2579 6 805 22 88 0 0 chr1 28931324 28931381 -168264051 + AT_rich Low_complexity Low_complexity 1 57 0 6 805 23 54 0 0 chr1 28931586 28931623 -168263809 + AT_rich Low_complexity Low_complexity 1 37 0 6 805 25 0 0 0 chr1 28931813 28931838 -168263594 + AT_rich Low_complexity Low_complexity 1 25 0 6 805 297 0 0 0 chr1 28931838 28931871 -168263561 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 805 441 0 0 0 chr1 28931871 28931919 -168263513 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 805 189 0 0 0 chr1 28931931 28931952 -168263480 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 805 312 27 0 0 chr1 28932211 28932248 -168263184 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 805 189 180 0 0 chr1 28932248 28932298 -168263134 + GA-rich Low_complexity Low_complexity 1 50 0 6 805 1442 109 201 25 chr1 28932336 28932619 -168262813 + Lx LINE L1 6315 6647 -7 6 805 204 156 62 0 chr1 28932878 28932942 -168262490 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 6 805 489 311 42 33 chr1 28934303 28934516 -168260916 + ID_B1 SINE B4 1 215 -9 6 805 256 358 87 24 chr1 28934952 28935078 -168260354 + RSINE1 SINE B4 8 141 -24 6 805 423 0 0 0 chr1 28935078 28935125 -168260307 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 805 315 323 113 44 chr1 28935313 28935588 -168259844 - MLT1A0 LTR MaLR -68 297 4 6 805 501 259 0 0 chr1 28935922 28936080 -168259352 + (TA)n Simple_repeat Simple_repeat 2 159 0 6 805 229 309 62 21 chr1 28936253 28936349 -168259083 - Tigger5 DNA MER2_type -353 2053 1954 6 805 331 365 54 6 chr1 28936525 28936693 -168258739 + Lx8 LINE L1 7152 7327 -146 6 805 216 111 0 0 chr1 28936701 28936737 -168258695 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 805 301 287 74 68 chr1 28936779 28936993 -168258439 - RLTR25A LTR ERVK -6 1097 815 6 805 189 0 0 0 chr1 28937198 28937219 -168258213 + (TC)n Simple_repeat Simple_repeat 1 21 0 6 805 372 323 33 3 chr1 28938493 28938608 -168256824 + B1_Mur2 SINE Alu 10 131 -18 6 805 24 67 0 0 chr1 28939730 28939775 -168255657 + AT_rich Low_complexity Low_complexity 1 45 0 6 805 450 0 0 0 chr1 28939846 28939896 -168255536 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 805 250 294 8 92 chr1 28939906 28940037 -168255395 - Lx9 LINE L1 -178 7466 7347 6 805 21 36 0 0 chr1 28940530 28940558 -168254874 + AT_rich Low_complexity Low_complexity 1 28 0 6 805 1479 226 105 23 chr1 28941486 28941876 -168253556 - RLTR11A LTR ERVK 0 528 107 6 805 28 0 0 0 chr1 28942172 28942200 -168253232 + AT_rich Low_complexity Low_complexity 1 28 0 6 805 300 366 94 40 chr1 28942836 28943038 -168252394 + MLT1A0 LTR MaLR 125 337 -28 6 805 288 284 57 69 chr1 28943055 28943214 -168252218 - MER92B LTR ERV1 -332 304 148 7 805 192 77 0 0 chr1 28943487 28943513 -168251919 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 7 805 703 299 55 17 chr1 28943658 28944015 -168251417 - L1_Mur3 LINE L1 -683 5614 5212 7 805 455 299 31 42 chr1 28944536 28944696 -168250736 + B3 SINE B2 27 185 -31 7 805 510 17 0 0 chr1 28944696 28944755 -168250677 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 805 455 299 31 42 chr1 28944755 28944786 -168250646 + B3 SINE B2 186 215 -1 7 805 1677 125 14 4 chr1 28944862 28945143 -168250289 - L1_Mus3 LINE L1 0 6638 6355 7 805 2199 111 147 7 chr1 28945870 28946277 -168249155 + IAPLTR2_Mm LTR ERVK 1 464 -11 7 805 3556 83 18 30 chr1 28946277 28947183 -168248249 + IAPEz-int LTR ERVK 6 662 -5819 7 805 2193 72 0 0 chr1 28947183 28947461 -168247971 + IAPEz-int LTR ERVK 1359 1636 -4845 7 805 5995 43 11 12 chr1 28947460 28948207 -168247225 + IAPEz-int LTR ERVK 5736 6481 0 7 805 2396 102 145 5 chr1 28948207 28948621 -168246811 + IAPLTR2_Mm LTR ERVK 1 472 -3 7 805 689 158 7 0 chr1 28949506 28949645 -168245787 + CT-rich Low_complexity Low_complexity 2 141 0 7 805 22 0 0 0 chr1 28949695 28949717 -168245715 + AT_rich Low_complexity Low_complexity 1 22 0 7 805 963 281 92 7 chr1 28950312 28950595 -168244837 + MTD LTR MaLR 18 324 -95 7 805 1153 253 34 98 chr1 28950638 28951076 -168244356 - MTD LTR MaLR -9 410 1 7 805 449 322 83 62 chr1 28951380 28951622 -168243810 + B4A SINE B4 3 249 -43 7 805 21 0 0 0 chr1 28951816 28951837 -168243595 + AT_rich Low_complexity Low_complexity 1 21 0 7 805 35 24 0 0 chr1 28952290 28952332 -168243100 + AT_rich Low_complexity Low_complexity 1 42 0 7 805 521 331 42 31 chr1 28952418 28952576 -168242856 + B3A SINE B2 3 167 -31 7 805 426 39 0 0 chr1 28952576 28952628 -168242804 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 805 521 331 42 31 chr1 28952628 28952662 -168242770 + B3A SINE B2 168 197 -1 7 805 189 0 0 0 chr1 28952932 28952953 -168242479 + (A)n Simple_repeat Simple_repeat 1 21 0 7 805 36 23 0 0 chr1 28954774 28954817 -168240615 + AT_rich Low_complexity Low_complexity 1 43 0 7 805 3519 53 0 11 chr1 28954887 28955344 -168240088 - L1Md_F2 LINE L1 0 6582 6131 7 805 3955 83 71 2 chr1 28956068 28956649 -168238783 - L1_Mm LINE L1 -1231 4652 4032 7 805 921 95 0 7 chr1 28956649 28956787 -168238645 + L1_Mus1 LINE L1 6431 6567 0 7 805 362 344 115 9 chr1 28956945 28957162 -168238270 - L2 LINE L2 -416 3003 2764 7 805 22 70 0 0 chr1 28957323 28957366 -168238066 + AT_rich Low_complexity Low_complexity 1 43 0 7 805 375 301 71 102 chr1 28957529 28957755 -168237677 - MIR SINE MIR 0 262 44 7 805 240 303 39 48 chr1 28959486 28959590 -168235842 + MLT2B4 LTR ERVL 194 296 -260 7 805 1596 245 122 55 chr1 28960096 28960602 -168234830 - RMER15 LTR ERVL -2 573 34 7 805 315 333 81 23 chr1 28960742 28961049 -168234383 - L1M2 LINE L1 -484 5816 5492 7 805 483 348 7 0 chr1 28961454 28961592 -168233840 - B4A SINE B4 0 292 154 7 805 671 323 144 20 chr1 28961592 28961898 -168233534 - MTD LTR MaLR 0 419 76 7 805 601 341 80 5 chr1 28962226 28962603 -168232829 + Lx9 LINE L1 6789 7193 -451 7 805 346 345 93 0 chr1 28963027 28963166 -168232266 - Lx7 LINE L1 -1064 6632 6481 7 805 272 381 0 25 chr1 28963171 28963330 -168232102 - Lx8 LINE L1 -1060 6413 6259 7 805 648 169 0 0 chr1 28963376 28963506 -168231926 + (TA)n Simple_repeat Simple_repeat 2 131 0 7 805 351 312 86 32 chr1 28963506 28963967 -168231465 - Lx7 LINE L1 -1508 6188 5714 7 805 467 298 32 27 chr1 28963968 28964154 -168231278 + MTD LTR MaLR 11 197 -224 7 805 3656 42 5 0 chr1 28964155 28964589 -168230843 - RLTR10C LTR ERVK 0 436 1 7 805 7519 44 1 51 chr1 28964589 28965574 -168229858 - MMERVK10C-int LTR ERVK 0 7581 6646 7 805 8670 39 0 0 chr1 28965560 28966581 -168228851 - MMERVK10C-int LTR ERVK -1771 5810 4790 7 805 1806 47 0 4 chr1 28966574 28966807 -168228625 - MMERVK10C-int LTR ERVK -3838 3743 3512 7 100 1973 9 9 4 chr1 28966776 28967009 -168228423 - RLTR10-int LTR ERVK -1102 885 652 7 806 332 89 0 0 chr1 28967012 28967057 -168228375 - RLTR10-int LTR ERVK -6405 137 93 7 806 242 132 50 50 chr1 28967068 28967148 -168228284 + CT-rich Low_complexity Low_complexity 2 81 0 7 806 348 47 0 0 chr1 28967230 28967273 -168228159 - MMERVK10C-int LTR ERVK -7314 267 225 7 806 253 200 0 0 chr1 28967273 28967318 -168228114 - RLTR27 LTR ERVK -34 275 231 7 806 1473 56 0 0 chr1 28967318 28967498 -168227934 - MMERVK10C-int LTR ERVK -7401 180 1 7 806 2779 36 194 0 chr1 28967498 28967863 -168227569 - RLTR10C LTR ERVK 0 436 1 7 806 598 257 97 6 chr1 28967864 28968040 -168227392 + MTD LTR MaLR 194 385 -34 7 806 294 73 0 0 chr1 28968091 28968132 -168227300 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 7 806 293 256 35 23 chr1 28968132 28968228 -168227204 + MTC-int LTR MaLR 245 429 -829 7 806 5964 133 51 13 chr1 28968260 28969258 -168226174 - Lx3_Mus LINE L1 -17 6992 5966 7 806 261 0 0 0 chr1 28969258 28969287 -168226145 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 806 5964 133 51 13 chr1 28969287 28969331 -168226101 - Lx3_Mus LINE L1 -1044 5965 5913 7 806 7484 66 23 0 chr1 28969418 28970551 -168224881 + L1_Mus1 LINE L1 5409 6567 0 7 806 448 376 57 11 chr1 28970577 28970815 -168224617 + MTC-int LTR MaLR 624 851 -407 7 806 210 71 0 0 chr1 28971613 28971641 -168223791 + (T)n Simple_repeat Simple_repeat 1 28 0 7 806 209 211 0 0 chr1 28971771 28971809 -168223623 + A-rich Low_complexity Low_complexity 3 40 0 7 806 236 321 88 53 chr1 28971877 28972048 -168223384 - Lx7 LINE L1 -551 7145 6969 7 806 22 0 0 0 chr1 28972316 28972338 -168223094 + AT_rich Low_complexity Low_complexity 1 22 0 7 806 528 150 18 9 chr1 28972340 28972454 -168222978 + (TA)n Simple_repeat Simple_repeat 1 115 0 7 806 899 179 173 33 chr1 28972454 28972491 -168222941 - L1_Mur2 LINE L1 -5786 1284 1249 7 806 2641 188 137 11 chr1 28972491 28973103 -168222329 - RMER6C LTR ERVK 0 690 2 7 806 899 191 156 52 chr1 28973103 28973471 -168221961 - L1_Mur2 LINE L1 -5822 1248 898 7 806 883 137 6 6 chr1 28973479 28973641 -168221791 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 7 806 183 170 0 0 chr1 28973640 28973687 -168221745 + T-rich Low_complexity Low_complexity 2 48 0 7 806 2282 207 30 32 chr1 28973790 28974290 -168221142 - RLTR19 LTR ERVK 0 499 1 7 806 1054 103 7 0 chr1 28974826 28974972 -168220460 + B1_Mus1 SINE Alu 2 148 0 7 806 336 152 0 0 chr1 28974974 28975040 -168220392 + A-rich Low_complexity Low_complexity 1 66 0 7 806 334 206 29 67 chr1 28975052 28975156 -168220276 - URR1B DNA MER1_type -38 187 88 7 806 2452 130 8 8 chr1 28975774 28976161 -168219271 + L1_Mus3 LINE L1 6248 6634 -4 7 806 572 265 54 22 chr1 28976588 28976773 -168218659 + Tigger7 DNA MER2_type 2263 2453 -38 7 806 22 0 0 0 chr1 28976954 28976976 -168218456 + AT_rich Low_complexity Low_complexity 1 22 0 7 806 289 367 10 58 chr1 28977020 28977228 -168218204 - B3A SINE B2 0 198 1 7 806 23 0 0 0 chr1 28977882 28977905 -168217527 + AT_rich Low_complexity Low_complexity 1 23 0 7 806 26 0 0 0 chr1 28978213 28978239 -168217193 + AT_rich Low_complexity Low_complexity 1 26 0 7 806 765 106 0 0 chr1 28978705 28978818 -168216614 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 7 806 1705 307 42 38 chr1 28979505 28980510 -168214922 - L1_Rod LINE L1 -1029 4818 3810 7 806 382 354 19 5 chr1 28980543 28980750 -168214682 + Lx9 LINE L1 7261 7470 -174 7 806 993 100 7 0 chr1 28980841 28980981 -168214451 + B1_Mus1 SINE Alu 2 142 -6 7 806 26 0 0 0 chr1 28980981 28981007 -168214425 + AT_rich Low_complexity Low_complexity 1 26 0 7 806 408 55 0 0 chr1 28981418 28981473 -168213959 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 806 216 135 0 0 chr1 28981473 28981510 -168213922 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 806 243 114 0 0 chr1 28981546 28981590 -168213842 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 806 385 110 14 14 chr1 28981591 28981665 -168213767 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 7 806 387 0 0 0 chr1 28982273 28982316 -168213116 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 806 680 191 130 60 chr1 28982319 28982519 -168212913 - Lx3C LINE L1 -3 6973 6760 7 806 731 94 8 0 chr1 28982696 28982823 -168212609 + (TC)n Simple_repeat Simple_repeat 1 128 0 7 806 21 0 0 0 chr1 28983346 28983367 -168212065 + AT_rich Low_complexity Low_complexity 1 21 0 7 806 23 54 0 0 chr1 28983655 28983692 -168211740 + AT_rich Low_complexity Low_complexity 1 37 0 7 806 1088 82 0 45 chr1 28984062 28984216 -168211216 - B1_Mus1 SINE Alu 0 148 2 7 806 27 0 0 0 chr1 28984226 28984253 -168211179 + AT_rich Low_complexity Low_complexity 1 27 0 7 806 1155 255 60 30 chr1 28984261 28984625 -168210807 - Lx4B LINE L1 -702 6356 5982 7 806 7204 82 11 18 chr1 28984628 28986163 -168209269 + L1_Mus2 LINE L1 5042 6565 -1 7 806 2040 174 12 23 chr1 28986169 28986662 -168208770 - Lx4B LINE L1 -1070 5988 5487 7 806 5530 112 12 30 chr1 28986657 28987230 -168208202 - L1VL4 LINE L1 -1496 2063 1499 7 806 3224 33 13 8 chr1 28987230 28987624 -168207808 + MTA_Mm LTR MaLR 1 396 0 7 806 498 33 0 0 chr1 28987624 28987684 -168207748 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 7 806 765 164 90 0 chr1 28987684 28987818 -168207614 - B1_Mus1 SINE Alu -2 146 1 7 806 5530 112 12 30 chr1 28987818 28988225 -168207207 - L1VL4 LINE L1 -2061 1498 1100 7 806 3227 173 50 18 chr1 28988877 28989786 -168205646 - L1VL4 LINE L1 -2448 1111 171 7 806 3376 222 70 84 chr1 28989809 28990144 -168205288 - L1_Mur1 LINE L1 -3492 2385 2049 7 806 420 20 0 0 chr1 28990144 28990193 -168205239 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 806 3376 222 70 84 chr1 28990193 28990435 -168204997 - L1_Mur1 LINE L1 -3829 2048 1829 7 806 1194 152 231 18 chr1 28990435 28990777 -168204655 + RLTR9F LTR ERVK 1 415 0 7 806 3376 230 67 85 chr1 28990777 28991793 -168203639 - L1_Mur1 LINE L1 -4049 1828 821 7 806 33 43 0 0 chr1 28991851 28991898 -168203534 + AT_rich Low_complexity Low_complexity 1 47 0 7 806 277 83 0 62 chr1 28992111 28992175 -168203257 + (TATAA)n Simple_repeat Simple_repeat 3 62 0 7 806 1032 123 0 0 chr1 28992271 28992417 -168203015 - B1_Mus2 SINE Alu 0 147 2 7 806 401 217 65 0 chr1 28992938 28993030 -168202402 - ORR1C2 LTR MaLR 0 384 287 7 806 234 360 0 96 chr1 28993132 28993155 -168202277 - B1F1 SINE Alu -72 77 61 7 806 423 38 0 0 chr1 28993155 28993208 -168202224 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 806 924 79 0 0 chr1 28993208 28993334 -168202098 + (TA)n Simple_repeat Simple_repeat 1 126 0 7 806 234 360 0 96 chr1 28993334 28993392 -168202040 - B1F1 SINE Alu -89 60 4 7 806 1687 265 83 42 chr1 28993948 28994611 -168200821 + RMER6C LTR ERVK 1 690 0 7 806 241 260 0 40 chr1 28996077 28996153 -168199279 + CT-rich Low_complexity Low_complexity 4 76 0 7 806 685 241 7 21 chr1 28996520 28996664 -168198768 - B1_Mus1 SINE Alu -3 145 4 7 806 1584 178 46 40 chr1 28996692 28997019 -168198413 + ORR1A4 LTR MaLR 1 329 0 7 806 21 71 0 0 chr1 28998224 28998266 -168197166 + AT_rich Low_complexity Low_complexity 1 42 0 7 806 2756 92 5 0 chr1 28998954 28999334 -168196098 + Lx3_Mus LINE L1 6504 6885 -124 8 806 28 0 0 0 chr1 28999371 28999399 -168196033 + AT_rich Low_complexity Low_complexity 1 28 0 8 806 31 44 0 0 chr1 28999875 28999920 -168195512 + AT_rich Low_complexity Low_complexity 1 45 0 8 806 464 245 175 68 chr1 29000704 29000910 -168194522 - HAL1-3A_ME LINE L1 -654 2204 1977 1 806 198 0 0 0 chr1 29001442 29001464 -168193968 + (A)n Simple_repeat Simple_repeat 1 22 0 2 806 546 101 0 0 chr1 29001845 29001870 -168193562 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 806 596 48 12 0 chr1 29001870 29001954 -168193478 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 806 546 101 0 0 chr1 29001954 29002017 -168193415 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 806 34 42 0 0 chr1 29002251 29002299 -168193133 + AT_rich Low_complexity Low_complexity 1 48 0 6 806 1493 340 43 45 chr1 29002358 29003343 -168192089 - Lx9 LINE L1 -167 7477 6495 7 806 403 253 105 9 chr1 29003530 29003752 -168191680 - L1_Rod LINE L1 -572 5308 5035 8 806 457 63 8 67 chr1 29003775 29003894 -168191538 + (TTTTG)n Simple_repeat Simple_repeat 3 114 0 9 806 541 331 49 32 chr1 29003902 29004308 -168191124 - L1_Rod LINE L1 -849 4998 4586 8 806 188 35 35 0 chr1 29004309 29004338 -168191094 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 806 231 103 0 25 chr1 29004355 29004395 -168191037 + RMER6D LTR ERVK 680 718 -2 1 806 277 297 6 62 chr1 29004403 29004579 -168190853 - L1M2 LINE L1 -3276 2867 2702 1 806 332 237 25 25 chr1 29004598 29004719 -168190713 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 806 942 115 7 0 chr1 29005927 29006066 -168189366 - B1_Mur4 SINE Alu -9 141 2 1 806 35 41 0 0 chr1 29006257 29006306 -168189126 + AT_rich Low_complexity Low_complexity 1 49 0 1 806 219 204 0 0 chr1 29006313 29006367 -168189065 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1 806 255 114 0 0 chr1 29006369 29006413 -168189019 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 806 479 306 40 40 chr1 29007276 29007426 -168188006 + RSINE1 SINE B4 8 157 -8 1 806 22 39 0 55 chr1 29007433 29007488 -168187944 + AT_rich Low_complexity Low_complexity 1 52 0 1 806 226 324 0 0 chr1 29007541 29007609 -168187823 - MLT1B LTR MaLR 0 390 323 2 806 308 24 24 0 chr1 29007609 29007650 -168187782 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 806 261 238 34 91 chr1 29007666 29007754 -168187678 + MT2B LTR ERVL 156 238 -363 2 806 197 59 0 56 chr1 29007773 29007809 -168187623 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 806 998 114 0 0 chr1 29007834 29007974 -168187458 + B1_Mus1 SINE Alu 1 140 -8 2 806 315 0 0 0 chr1 29007974 29008009 -168187423 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 806 21 0 0 0 chr1 29009773 29009794 -168185638 + AT_rich Low_complexity Low_complexity 1 21 0 2 806 40 59 0 0 chr1 29010410 29010478 -168184954 + AT_rich Low_complexity Low_complexity 1 68 0 2 806 234 0 0 0 chr1 29010796 29010822 -168184610 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2 806 866 306 103 6 chr1 29010829 29011141 -168184291 - Lx6 LINE L1 -190 7270 6929 2 806 26 0 0 0 chr1 29011372 29011398 -168184034 + AT_rich Low_complexity Low_complexity 1 26 0 3 806 22 0 0 0 chr1 29011923 29011945 -168183487 + AT_rich Low_complexity Low_complexity 1 22 0 3 806 3255 33 8 0 chr1 29011951 29012344 -168183088 + MTA_Mm LTR MaLR 1 396 0 3 806 5831 118 11 1 chr1 29012398 29013281 -168182151 + Lx3_Mus LINE L1 6110 7001 -8 3 806 465 305 38 8 chr1 29013315 29013447 -168181985 - B1_Mur1 SINE Alu -9 140 5 3 806 1145 294 76 72 chr1 29013447 29013868 -168181564 - L1_Mur3 LINE L1 -1510 4370 3936 3 806 446 0 19 0 chr1 29013868 29013922 -168181510 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 806 1145 294 76 72 chr1 29013922 29013950 -168181482 - L1_Mur3 LINE L1 -1945 3935 3935 3 806 660 341 23 90 chr1 29013950 29014250 -168181182 - B4 SINE B4 -12 280 1 3 806 1145 294 76 72 chr1 29014250 29014516 -168180916 - L1_Mur3 LINE L1 -1945 3935 3651 3 806 426 272 11 105 chr1 29014595 29014707 -168180725 + L1M2 LINE L1 4388 4484 -1659 3 806 315 0 0 0 chr1 29014707 29014742 -168180690 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 806 426 272 11 105 chr1 29014742 29014896 -168180536 + L1M2 LINE L1 4485 4629 -1514 3 806 685 318 70 52 chr1 29014913 29015273 -168180159 + MTE2a LTR MaLR 8 356 -63 4 806 1171 311 40 19 chr1 29015645 29016018 -168179414 + Lx8 LINE L1 6914 7294 -179 4 806 513 0 0 0 chr1 29016019 29016076 -168179356 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 806 33 43 0 0 chr1 29016764 29016811 -168178621 + AT_rich Low_complexity Low_complexity 1 47 0 4 806 21 57 0 0 chr1 29017107 29017142 -168178290 + AT_rich Low_complexity Low_complexity 1 35 0 4 806 1045 30 0 0 chr1 29017243 29017377 -168178055 - L1Md_F2 LINE L1 -14 6568 6435 4 806 648 191 0 0 chr1 29017666 29017771 -168177661 + RMER6D LTR ERVK 1 105 -615 4 806 27 29 0 0 chr1 29019469 29019503 -168175929 + AT_rich Low_complexity Low_complexity 1 34 0 4 806 34 65 0 0 chr1 29021558 29021620 -168173812 + AT_rich Low_complexity Low_complexity 1 62 0 4 806 21 71 0 0 chr1 29022468 29022510 -168172922 + AT_rich Low_complexity Low_complexity 1 42 0 5 806 681 361 37 8 chr1 29023138 29023381 -168172051 + ORR1D2 LTR MaLR 1 250 -120 5 806 625 247 85 37 chr1 29024175 29024364 -168171068 - RMER1B Other Other -309 757 560 5 806 576 0 0 0 chr1 29024414 29024478 -168170954 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 806 294 29 0 0 chr1 29024479 29024514 -168170918 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 806 928 302 91 91 chr1 29025400 29026016 -168169416 + RLTR18 LTR ERVK 1 616 0 5 806 21 0 0 0 chr1 29026208 29026229 -168169203 + AT_rich Low_complexity Low_complexity 1 21 0 5 806 22 35 0 0 chr1 29026983 29027012 -168168420 + AT_rich Low_complexity Low_complexity 1 29 0 5 806 23 33 0 0 chr1 29028175 29028205 -168167227 + AT_rich Low_complexity Low_complexity 1 30 0 5 806 324 207 0 0 chr1 29028574 29028632 -168166800 + Lx7 LINE L1 7058 7115 -581 5 806 6641 83 19 13 chr1 29028646 29029890 -168165542 - L1Md_F2 LINE L1 -12 6570 5318 6 806 2291 268 47 70 chr1 29029927 29030222 -168165210 - Lx7 LINE L1 -53 7643 7392 6 806 672 93 0 0 chr1 29030222 29030319 -168165113 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 6 806 2291 268 47 70 chr1 29030319 29030965 -168164467 - Lx7 LINE L1 -305 7391 6724 6 806 5548 196 131 97 chr1 29030957 29031681 -168163751 - L1_Mur3 LINE L1 -396 5484 4756 6 806 429 103 0 0 chr1 29031681 29031749 -168163683 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 806 5548 196 131 97 chr1 29031749 29032197 -168163235 - L1_Mur3 LINE L1 -1125 4755 4278 6 806 423 0 0 0 chr1 29032197 29032244 -168163188 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 806 5548 196 131 97 chr1 29032244 29033047 -168162385 - L1_Mur3 LINE L1 -1603 4277 3444 6 806 186 71 0 0 chr1 29033805 29033833 -168161599 + (CAAAC)n Simple_repeat Simple_repeat 1 28 0 6 806 338 229 108 17 chr1 29034298 29034418 -168161014 - Lx5 LINE L1 0 7050 6920 6 806 1935 179 25 22 chr1 29034417 29034777 -168160655 - Lx5 LINE L1 -515 6535 6175 6 806 405 0 0 0 chr1 29035094 29035139 -168160293 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 806 409 210 72 8 chr1 29035433 29035558 -168159874 - Lx9 LINE L1 0 7644 7512 6 806 246 105 0 0 chr1 29035559 29035597 -168159835 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 806 32 43 0 0 chr1 29035753 29035799 -168159633 + AT_rich Low_complexity Low_complexity 1 46 0 7 806 1699 164 28 19 chr1 29036173 29036496 -168158936 - Lx3C LINE L1 -2 6974 6649 7 806 319 165 0 12 chr1 29036652 29036732 -168158700 - Lx3C LINE L1 -4 6972 6894 7 806 284 319 123 59 chr1 29036741 29036841 -168158591 - B3 SINE B2 0 216 106 7 806 3641 46 22 2 chr1 29036841 29037301 -168158131 + L1Md_F3 LINE L1 6116 6584 0 7 806 284 319 123 59 chr1 29037301 29037327 -168158105 - B3 SINE B2 -111 105 87 7 806 1041 83 0 20 chr1 29037327 29037475 -168157957 + B1_Mus2 SINE Alu 1 145 -2 7 806 284 319 123 59 chr1 29037475 29037550 -168157882 - B3 SINE B2 -130 86 2 7 806 427 346 77 14 chr1 29038818 29039038 -168156394 + B4A SINE B4 20 253 -39 7 806 258 260 0 25 chr1 29039047 29039126 -168156306 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 7 806 183 80 0 0 chr1 29039300 29039325 -168156107 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 806 414 53 0 0 chr1 29039325 29039382 -168156050 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 806 236 289 59 109 chr1 29039845 29039946 -168155486 - PB1D7 SINE Alu -5 115 20 8 806 23 0 0 0 chr1 29040544 29040567 -168154865 + AT_rich Low_complexity Low_complexity 1 23 0 8 806 24 0 0 0 chr1 29041875 29041899 -168153533 + AT_rich Low_complexity Low_complexity 1 24 0 8 806 6269 96 16 28 chr1 29041977 29042953 -168152479 + L1_Mus2 LINE L1 5647 6566 0 8 806 183 42 0 0 chr1 29043548 29043572 -168151860 + (CATA)n Simple_repeat Simple_repeat 1 24 0 8 806 236 136 67 11 chr1 29045025 29045114 -168150318 + (TA)n Simple_repeat Simple_repeat 2 95 0 8 806 25 31 0 0 chr1 29045114 29045146 -168150286 + AT_rich Low_complexity Low_complexity 1 32 0 8 806 422 354 21 52 chr1 29045822 29046013 -168149419 + B4A SINE B4 108 292 0 8 806 2349 222 54 69 chr1 29047415 29047605 -168147827 + RMER6C LTR ERVK 1 193 -497 8 806 1034 126 88 25 chr1 29047605 29047809 -168147623 + Lx LINE L1 6437 6653 -1 9 806 2349 222 54 69 chr1 29047809 29048318 -168147114 + RMER6C LTR ERVK 194 690 0 8 806 308 273 6 0 chr1 29048425 29048590 -168146842 + (TG)n Simple_repeat Simple_repeat 1 166 0 9 806 185 197 16 0 chr1 29048615 29048676 -168146756 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 806 401 350 48 12 chr1 29048723 29048888 -168146544 - B4A SINE B4 0 292 122 9 806 1524 262 133 11 chr1 29050895 29051273 -168144159 + L1_Rod LINE L1 226 638 -6534 9 806 252 0 0 0 chr1 29051273 29051301 -168144131 + (CAT)n Simple_repeat Simple_repeat 2 29 0 9 806 1524 262 133 11 chr1 29051301 29051448 -168143984 + L1_Rod LINE L1 639 814 -6358 9 806 195 42 0 0 chr1 29051448 29051472 -168143960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 806 376 241 41 165 chr1 29051473 29051667 -168143765 + L1_Rod LINE L1 3481 3650 -2197 9 806 239 233 0 48 chr1 29051702 29051765 -168143667 + GA-rich Low_complexity Low_complexity 2 61 0 9 806 31 0 0 0 chr1 29052408 29052439 -168142993 + AT_rich Low_complexity Low_complexity 1 31 0 9 806 28 0 0 0 chr1 29052610 29052638 -168142794 + AT_rich Low_complexity Low_complexity 1 28 0 9 806 584 140 0 9 chr1 29053027 29053135 -168142297 + (TC)n Simple_repeat Simple_repeat 2 108 0 1 806 400 240 0 59 chr1 29053156 29053258 -168142174 - B1_Mur3 SINE Alu -9 140 45 1 806 1428 287 46 16 chr1 29053262 29053715 -168141717 + Lx7 LINE L1 6378 6844 -852 1 806 210 71 0 0 chr1 29054186 29054214 -168141218 + (T)n Simple_repeat Simple_repeat 1 28 0 1 806 21 57 0 0 chr1 29054705 29054740 -168140692 + AT_rich Low_complexity Low_complexity 1 35 0 1 806 30 59 0 0 chr1 29055053 29055104 -168140328 + AT_rich Low_complexity Low_complexity 1 51 0 1 806 1723 86 0 83 chr1 29056032 29056310 -168139122 + L1_Mus2 LINE L1 6312 6566 0 1 806 485 223 21 11 chr1 29056444 29056609 -168138823 - MTC LTR MaLR -3 418 140 1 806 1716 178 160 27 chr1 29056612 29057178 -168138254 + RLTR26 LTR ERVK 2 642 0 1 806 627 211 30 8 chr1 29057180 29057203 -168138229 - MTC LTR MaLR -280 141 119 1 806 207 0 0 0 chr1 29057203 29057226 -168138206 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 806 627 211 30 8 chr1 29057226 29057336 -168138096 - MTC LTR MaLR -303 118 5 1 806 414 0 0 0 chr1 29057419 29057465 -168137967 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 806 562 193 13 52 chr1 29057823 29057976 -168137456 + Lx2A1 LINE L1 6848 6994 -14 1 806 214 356 58 29 chr1 29058859 29058963 -168136469 + L2a LINE L2 3287 3393 -33 1 806 182 238 24 0 chr1 29059930 29059972 -168135460 - L3 LINE CR1 -1096 3393 3351 1 806 23 0 0 0 chr1 29060353 29060376 -168135056 + AT_rich Low_complexity Low_complexity 1 23 0 1 806 745 231 14 104 chr1 29060652 29060676 -168134756 - B3 SINE B2 0 216 195 1 806 499 85 12 12 chr1 29060676 29060759 -168134673 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 806 745 231 14 104 chr1 29060759 29060946 -168134486 - B3 SINE B2 -22 194 24 1 806 676 259 133 8 chr1 29060946 29061187 -168134245 + Lx3C LINE L1 6673 6943 -33 1 806 1830 201 86 15 chr1 29061190 29061663 -168133769 + RLTR31A_Mm LTR ERVK 28 533 -24 1 806 28 0 0 0 chr1 29061701 29061729 -168133703 + AT_rich Low_complexity Low_complexity 1 28 0 1 806 204 40 0 0 chr1 29062656 29062681 -168132751 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1 806 186 303 38 98 chr1 29062739 29062922 -168132510 + MIR SINE MIR 91 262 0 1 806 375 319 28 28 chr1 29062967 29063109 -168132323 - B1F SINE Alu -7 142 1 1 806 226 218 0 37 chr1 29063206 29063287 -168132145 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 1 806 423 0 0 0 chr1 29063310 29063357 -168132075 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 806 502 220 54 18 chr1 29063420 29063587 -168131845 + Lx9 LINE L1 7470 7642 -2 1 806 1932 288 60 17 chr1 29063613 29064252 -168131180 - RMER1C Other Other -270 1072 407 1 806 940 228 58 31 chr1 29064258 29064407 -168131025 + RMER1C Other Other 1078 1226 -116 1 806 1028 139 0 11 chr1 29064407 29064589 -168130843 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 806 940 228 58 31 chr1 29064589 29064697 -168130735 + RMER1C Other Other 1227 1341 -1 1 806 26 30 0 0 chr1 29065067 29065100 -168130332 + AT_rich Low_complexity Low_complexity 1 33 0 1 806 933 227 101 39 chr1 29065323 29065952 -168129480 + L1_Mur2 LINE L1 889 1493 -4384 1 806 581 174 18 0 chr1 29065952 29066061 -168129371 + ORR1B1 LTR MaLR 227 337 -57 1 806 7950 45 2 2 chr1 29066061 29067034 -168128398 - L1Md_T LINE L1 -5 6577 5605 1 806 1524 100 4 21 chr1 29067034 29067268 -168128164 - L1_Mus2 LINE L1 -5 6561 6332 1 806 3257 72 0 0 chr1 29067268 29067753 -168127679 + L1_Mus2 LINE L1 5449 5933 -633 1 806 387 155 14 0 chr1 29067753 29067824 -168127608 + ORR1A4 LTR MaLR 258 329 0 1 806 831 190 12 0 chr1 29067825 29067988 -168127444 + ORR1A4-int LTR MaLR 2 166 -1797 1 806 492 193 29 55 chr1 29067988 29068141 -168127291 - RMER19C LTR ERVK 0 611 520 1 806 342 317 30 30 chr1 29068200 29068366 -168127066 - Lx7 LINE L1 -358 7338 7173 1 806 792 114 0 0 chr1 29068385 29068516 -168126916 + (TG)n Simple_repeat Simple_repeat 1 131 0 1 806 26 50 0 0 chr1 29069363 29069403 -168126029 + AT_rich Low_complexity Low_complexity 1 40 0 1 806 189 0 0 0 chr1 29070989 29071010 -168124422 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 806 28 48 0 0 chr1 29071401 29071443 -168123989 + AT_rich Low_complexity Low_complexity 1 42 0 1 806 1882 189 76 3 chr1 29071623 29071990 -168123442 + ORR1B1 LTR MaLR 1 394 0 1 806 291 284 162 18 chr1 29074398 29074509 -168120923 + B3 SINE B2 77 203 -13 1 806 225 83 0 0 chr1 29075034 29075070 -168120362 + (A)n Simple_repeat Simple_repeat 1 36 0 1 806 405 0 0 0 chr1 29075600 29075645 -168119787 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 806 705 296 24 14 chr1 29076069 29076363 -168119069 + L1MD LINE L1 5421 5717 -642 1 806 331 364 88 17 chr1 29076389 29076629 -168118803 - MLT1A0 LTR MaLR -68 297 41 1 806 25 51 0 0 chr1 29076677 29076716 -168118716 + AT_rich Low_complexity Low_complexity 1 39 0 1 806 1026 119 12 12 chr1 29077327 29077489 -168117943 + B2_Mm2 SINE B2 2 163 -32 1 806 195 42 0 0 chr1 29077489 29077513 -168117919 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 806 22 56 0 0 chr1 29077516 29077552 -168117880 + AT_rich Low_complexity Low_complexity 1 36 0 1 806 213 121 0 0 chr1 29078729 29078762 -168116670 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 1 806 607 302 36 20 chr1 29078772 29078968 -168116464 - MTD LTR MaLR -220 199 1 1 806 915 274 4 9 chr1 29078968 29079181 -168116251 - MTD LTR MaLR -198 221 10 1 806 243 220 34 0 chr1 29079453 29079512 -168115920 + GA-rich Low_complexity Low_complexity 3 63 0 1 806 529 72 24 0 chr1 29079530 29079613 -168115819 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 806 241 250 16 0 chr1 29079614 29079678 -168115754 + GA-rich Low_complexity Low_complexity 2 66 0 1 806 508 174 34 23 chr1 29079710 29079886 -168115546 + GA-rich Low_complexity Low_complexity 1 178 0 1 806 1163 45 5 32 chr1 29079886 29080071 -168115361 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 806 724 169 23 11 chr1 29080092 29080266 -168115166 + GA-rich Low_complexity Low_complexity 3 178 0 1 806 239 219 0 0 chr1 29080267 29080308 -168115124 + polypurine Low_complexity Low_complexity 1 41 0 1 806 591 115 65 18 chr1 29080308 29080476 -168114956 + GA-rich Low_complexity Low_complexity 5 180 0 1 806 357 262 56 13 chr1 29080478 29080710 -168114722 - RMER17C LTR ERVK -167 243 2 1 806 429 70 0 0 chr1 29080784 29080841 -168114591 + (T)n Simple_repeat Simple_repeat 1 57 0 1 806 1765 121 18 14 chr1 29080841 29081117 -168114315 - ORR1A4 LTR MaLR -52 277 1 1 806 3703 147 23 2 chr1 29082080 29082699 -168112733 + Lx LINE L1 6019 6650 -4 1 806 191 336 71 0 chr1 29085123 29085263 -168110169 - L2 LINE L2 -1357 2062 1913 1 806 305 287 119 28 chr1 29086167 29086418 -168109014 + L1MA8 LINE L1 5766 6039 -252 1 806 1311 271 78 13 chr1 29086801 29087517 -168107915 + RLTR40 LTR ERVK 5 803 -14 1 806 240 35 0 0 chr1 29087659 29087688 -168107744 + (A)n Simple_repeat Simple_repeat 1 29 0 1 806 279 133 0 0 chr1 29089298 29089343 -168106089 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 1 806 402 163 0 0 chr1 29089342 29089440 -168105992 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 806 678 364 26 26 chr1 29089440 29089781 -168105651 - MTEa LTR MaLR -35 344 4 1 806 1105 89 7 0 chr1 29089924 29090070 -168105362 + B1_Mus1 SINE Alu 2 148 0 1 806 300 53 0 0 chr1 29090203 29090241 -168105191 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1 806 481 100 22 0 chr1 29090387 29090477 -168104955 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 806 1046 251 128 24 chr1 29090504 29090839 -168104593 + ORR1D1 LTR MaLR 5 374 0 1 806 738 69 0 0 chr1 29091450 29091551 -168103881 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 806 5452 108 37 54 chr1 29092592 29093633 -168101799 + RLTR13D4 LTR ERVK 1 941 -82 1 100 36362 68 3 3 chr1 29093664 29099854 -168095578 - L1Md_F2 LINE L1 -1 6581 441 1 807 522 181 21 0 chr1 29099868 29099962 -168095470 + RLTR13D4 LTR ERVK 938 1033 0 1 807 210 37 0 0 chr1 29099996 29100023 -168095409 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 807 1072 97 0 0 chr1 29100118 29100263 -168095169 + B1_Mus1 SINE Alu 2 146 -2 1 807 22 0 0 0 chr1 29100315 29100337 -168095095 + AT_rich Low_complexity Low_complexity 1 22 0 1 807 10486 173 19 14 chr1 29100885 29101142 -168094290 + L1_Mur2 LINE L1 3222 3477 -2400 1 807 259 44 44 0 chr1 29101142 29101187 -168094245 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 807 10486 173 19 14 chr1 29101187 29103024 -168092408 + L1_Mur2 LINE L1 3478 5327 -550 1 807 2332 141 26 17 chr1 29103024 29103443 -168091989 + Lx LINE L1 6232 6654 0 1 807 225 0 0 0 chr1 29104283 29104308 -168091124 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 807 545 340 57 15 chr1 29104843 29105303 -168090129 - L1_Rod LINE L1 -3816 2031 1553 1 807 770 134 77 7 chr1 29105425 29105568 -168089864 - MTB_Mm LTR MaLR 0 407 255 1 807 1133 74 0 0 chr1 29105568 29105716 -168089716 - L1_Mus2 LINE L1 -430 6136 5989 1 807 1522 65 0 5 chr1 29105716 29105917 -168089515 + L1_Mus2 LINE L1 6367 6566 0 1 807 1910 100 3 18 chr1 29105941 29106227 -168089205 - MTB_Mm LTR MaLR -125 282 1 1 807 799 126 39 0 chr1 29106718 29106845 -168088587 - B1_Mus1 SINE Alu -15 133 2 1 807 2369 160 86 22 chr1 29107536 29107989 -168087443 + Lx LINE L1 6172 6653 -1 1 807 249 257 94 14 chr1 29108656 29108794 -168086638 - Lx9 LINE L1 0 7644 7496 1 807 552 15 0 0 chr1 29109160 29109225 -168086207 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 807 207 133 0 0 chr1 29109225 29109270 -168086162 + (T)n Simple_repeat Simple_repeat 1 45 0 1 807 1254 169 22 154 chr1 29110614 29110985 -168084447 - RLTRETN_Mm LTR ERVK 0 322 1 1 807 26 30 0 0 chr1 29111163 29111196 -168084236 + AT_rich Low_complexity Low_complexity 1 33 0 1 807 3059 151 38 22 chr1 29111206 29111760 -168083672 - Lx3B LINE L1 -5 6968 6406 1 807 22 70 0 0 chr1 29111906 29111949 -168083483 + AT_rich Low_complexity Low_complexity 1 43 0 1 807 898 151 7 0 chr1 29113284 29113430 -168082002 - B1_Mus1 SINE Alu -1 147 1 2 807 496 250 68 8 chr1 29114081 29114198 -168081234 - RSINE1 SINE B4 -40 125 2 2 807 383 329 45 39 chr1 29114281 29114436 -168080996 - B3A SINE B2 -41 157 2 2 807 1138 75 0 0 chr1 29117281 29117427 -168078005 - B1_Mm SINE Alu 0 147 2 2 807 912 82 0 0 chr1 29117436 29117571 -168077861 - L1Md_F2 LINE L1 -8 6574 6440 2 807 1540 62 0 0 chr1 29117571 29117764 -168077668 + L1Md_F2 LINE L1 6252 6444 -138 2 807 818 207 20 0 chr1 29119085 29119283 -168076149 - Lx2 LINE L1 -1 6996 6795 2 807 28 86 0 0 chr1 29119392 29119462 -168075970 + AT_rich Low_complexity Low_complexity 1 70 0 2 807 274 273 186 26 chr1 29119513 29119739 -168075693 + Lx9 LINE L1 7341 7602 -42 2 807 30 83 0 0 chr1 29119755 29119827 -168075605 + AT_rich Low_complexity Low_complexity 1 72 0 2 807 628 251 170 5 chr1 29120889 29121077 -168074355 - MTD LTR MaLR -10 409 191 2 807 1021 301 45 3 chr1 29121103 29121416 -168074016 - Lx6 LINE L1 0 7460 7135 2 807 758 148 0 0 chr1 29121414 29121542 -168073890 - L1_Mm LINE L1 -460 5423 5296 2 807 576 0 0 0 chr1 29121542 29121606 -168073826 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 807 967 135 0 0 chr1 29121610 29121758 -168073674 - B1_Mus1 SINE Alu 0 148 1 2 807 416 140 0 123 chr1 29121758 29121809 -168073623 - L1_Mur2 LINE L1 -582 5295 5251 2 807 3003 84 11 18 chr1 29121809 29122247 -168073185 - L1_Mus1 LINE L1 0 6567 6133 2 807 416 140 0 123 chr1 29122247 29122301 -168073131 - L1_Mur2 LINE L1 -627 5250 5203 2 807 414 118 0 0 chr1 29122298 29122366 -168073066 + L1_Mus4 LINE L1 5579 5646 -237 2 807 732 179 0 0 chr1 29122368 29122491 -168072941 + L1_Mus4 LINE L1 6114 6236 -400 2 807 22 35 0 0 chr1 29122672 29122701 -168072731 + AT_rich Low_complexity Low_complexity 1 29 0 2 807 1316 162 0 0 chr1 29122709 29122943 -168072489 - L1_Mur1 LINE L1 -682 5204 4971 2 807 4356 132 4 0 chr1 29122951 29123775 -168071657 + L1_Mus4 LINE L1 5408 6236 -400 2 807 21 36 0 0 chr1 29123955 29123983 -168071449 + AT_rich Low_complexity Low_complexity 1 28 0 2 807 1019 290 128 0 chr1 29124544 29124872 -168070560 + ORR1D2 LTR MaLR 1 370 0 2 807 264 409 0 31 chr1 29125808 29125967 -168069465 - RSINE1 SINE B4 0 165 12 2 807 1447 92 66 0 chr1 29126210 29126437 -168068995 + L1_Mus2 LINE L1 6323 6564 -2 2 807 593 301 12 25 chr1 29126485 29126645 -168068787 + B3A SINE B2 36 193 -5 2 807 316 211 111 26 chr1 29126933 29127050 -168068382 - Lx9 LINE L1 -6 7638 7512 2 807 657 66 0 0 chr1 29127542 29127633 -168067799 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 807 521 15 15 0 chr1 29127636 29127702 -168067730 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 2 807 480 35 0 0 chr1 29127999 29128057 -168067375 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 807 396 258 127 58 chr1 29129105 29129294 -168066138 - Lx9 LINE L1 -5 7639 7438 2 807 1415 198 53 72 chr1 29130225 29130474 -168064958 + RMER6D LTR ERVK 1 239 -481 2 807 6418 53 12 1 chr1 29130474 29131284 -168064148 - L1Md_F2 LINE L1 -12 6570 5752 2 807 2557 157 9 13 chr1 29131284 29131742 -168063690 - Lx3B LINE L1 -12 6961 6506 2 807 1415 198 53 72 chr1 29131742 29131866 -168063566 + RMER6D LTR ERVK 240 367 -353 2 807 227 31 31 0 chr1 29131875 29131907 -168063525 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 807 183 80 0 0 chr1 29132212 29132237 -168063195 + (A)n Simple_repeat Simple_repeat 1 25 0 2 807 327 278 0 20 chr1 29132287 29132386 -168063046 - BC1_Mm scRNA scRNA -42 110 14 2 807 639 22 22 11 chr1 29132453 29132543 -168062889 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2 807 207 0 0 0 chr1 29132550 29132573 -168062859 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 807 355 221 8 8 chr1 29132696 29132824 -168062608 + GA-rich Low_complexity Low_complexity 1 128 0 2 807 23 54 0 0 chr1 29132827 29132864 -168062568 + AT_rich Low_complexity Low_complexity 1 37 0 2 807 307 303 28 68 chr1 29132880 29133057 -168062375 - Lx7 LINE L1 -392 7304 7135 2 807 271 203 94 0 chr1 29133135 29133199 -168062233 + Lx8 LINE L1 7375 7444 -29 2 807 306 0 0 0 chr1 29133771 29133805 -168061627 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 807 182 37 37 0 chr1 29134113 29134140 -168061292 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 807 36 0 0 0 chr1 29135113 29135149 -168060283 + AT_rich Low_complexity Low_complexity 1 36 0 2 807 3978 144 21 1 chr1 29135216 29135878 -168059554 + Lx2 LINE L1 6318 6992 -5 2 807 390 57 0 0 chr1 29137460 29137513 -168057919 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 807 22 0 0 0 chr1 29137673 29137695 -168057737 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 26 0 0 0 chr1 29138257 29138283 -168057149 + AT_rich Low_complexity Low_complexity 1 26 0 2 807 288 53 0 0 chr1 29138668 29138706 -168056726 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 807 294 296 128 27 chr1 29138838 29138987 -168056445 + Lx8 LINE L1 6429 6592 -881 2 807 1725 211 27 39 chr1 29139069 29139479 -168055953 + RMER6D LTR ERVK 259 663 -57 2 807 3121 47 11 0 chr1 29139538 29139919 -168055513 + IAPEY_LTR LTR ERVK 1 385 0 2 807 374 125 0 12 chr1 29140991 29141072 -168054360 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 807 232 325 38 38 chr1 29141808 29141888 -168053544 + PB1 SINE Alu 1 80 -47 2 807 1210 101 0 6 chr1 29141956 29142125 -168053307 - B2_Mm2 SINE B2 -27 168 1 2 807 574 221 167 44 chr1 29142283 29142487 -168052945 - MTC LTR MaLR 0 421 193 2 807 843 198 59 3 chr1 29142507 29142888 -168052544 + L1_Mur2 LINE L1 1007 1473 -4404 2 807 341 85 0 0 chr1 29142894 29142941 -168052491 - Lx3C LINE L1 -1201 5775 5729 2 807 2742 213 113 17 chr1 29142943 29143688 -168051744 + Lx3C LINE L1 5792 6607 -369 2 807 5680 212 15 15 chr1 29143685 29145050 -168050382 + L1_Mur2 LINE L1 1570 2934 -2943 2 807 1758 222 39 11 chr1 29145050 29145483 -168049949 + L1_Mur2 LINE L1 5197 5641 -236 2 807 4166 222 98 9 chr1 29145477 29146496 -168048936 + Lx5 LINE L1 5937 7046 -4 2 807 261 216 0 0 chr1 29146695 29146783 -168048649 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 807 455 329 36 12 chr1 29147522 29147688 -168047744 - RMER15 LTR ERVL -13 562 393 2 807 753 111 15 7 chr1 29148678 29148814 -168046618 - Lx LINE L1 -4 6650 6514 2 807 27 0 0 0 chr1 29149426 29149453 -168045979 + AT_rich Low_complexity Low_complexity 1 27 0 2 807 21 71 0 0 chr1 29149841 29149883 -168045549 + AT_rich Low_complexity Low_complexity 1 42 0 2 807 21 0 0 0 chr1 29150149 29150170 -168045262 + AT_rich Low_complexity Low_complexity 1 21 0 2 807 6925 96 11 26 chr1 29152439 29153467 -168041965 - L1Md_F2 LINE L1 -12 6570 5586 2 807 553 11 144 0 chr1 29154051 29154141 -168041291 - L1Md_T LINE L1 -2 6580 6478 2 807 513 0 0 0 chr1 29154723 29154780 -168040652 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 807 237 33 0 0 chr1 29154781 29154811 -168040621 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 807 497 364 87 5 chr1 29155112 29155319 -168040113 - B4A SINE B4 -63 229 6 2 807 484 269 0 58 chr1 29155509 29155647 -168039785 - B1_Mur2 SINE Alu -1 148 19 2 807 301 294 11 34 chr1 29155661 29155749 -168039683 + BC1_Mm scRNA scRNA 2 87 -65 2 807 705 106 0 0 chr1 29157793 29157897 -168037535 + (TA)n Simple_repeat Simple_repeat 1 104 0 2 807 267 130 0 0 chr1 29157897 29157951 -168037481 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 807 250 306 65 16 chr1 29158212 29158335 -168037097 + MLT1A1 LTR MaLR 27 155 -253 2 807 240 59 0 0 chr1 29159044 29159078 -168036354 + (CATA)n Simple_repeat Simple_repeat 1 34 0 2 807 1137 241 50 4 chr1 29159782 29160061 -168035371 + RLTR18B LTR ERVK 114 405 -107 2 807 619 183 0 0 chr1 29160061 29160165 -168035267 + Lx2 LINE L1 6431 6534 -466 2 807 2737 147 18 72 chr1 29160165 29160927 -168034505 + RLTR13D6 LTR ERVK 1 902 0 2 807 1826 224 58 22 chr1 29160927 29161379 -168034053 + Lx2 LINE L1 6530 6997 0 2 807 556 299 0 0 chr1 29161414 29161541 -168033891 + RLTR18B LTR ERVK 380 506 -6 2 807 326 156 0 15 chr1 29163503 29163568 -168031864 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 2 807 736 220 0 7 chr1 29163690 29163841 -168031591 + B1_Mur4 SINE Alu 1 150 0 2 807 1338 307 24 53 chr1 29164260 29164640 -168030792 - Lx9 LINE L1 -360 7284 6914 2 807 1718 103 23 4 chr1 29164640 29164903 -168030529 - L1_Mus3 LINE L1 -16 6622 6355 2 807 1338 307 24 53 chr1 29164903 29165031 -168030401 - Lx9 LINE L1 -731 6913 6791 2 807 2032 128 19 0 chr1 29165041 29165362 -168030070 - ORR1A2 LTR MaLR 0 327 1 2 807 1152 77 6 0 chr1 29166161 29166330 -168029102 - L1Md_A LINE L1 -1 6581 6412 2 807 5858 31 24 0 chr1 29166330 29167034 -168028398 + L1Md_T LINE L1 5722 6442 -140 2 807 391 314 143 21 chr1 29167767 29167956 -168027476 - B3 SINE B2 0 216 5 2 807 414 0 0 0 chr1 29167973 29168019 -168027413 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 807 38 75 0 0 chr1 29168033 29168113 -168027319 + AT_rich Low_complexity Low_complexity 1 80 0 2 807 2415 215 43 26 chr1 29168188 29168723 -168026709 - Lx5 LINE L1 0 7050 6507 2 807 731 329 17 61 chr1 29168861 29169156 -168026276 + MTE2a LTR MaLR 95 376 -3 2 807 28198 169 35 45 chr1 29169851 29171238 -168024194 + L1_Mus2 LINE L1 377 1716 -4167 2 807 3427 129 72 58 chr1 29171238 29171629 -168023803 - RMER17A LTR ERVK -2 749 362 2 807 570 29 0 0 chr1 29171629 29171697 -168023735 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 807 3427 129 72 58 chr1 29171697 29172044 -168023388 - RMER17A LTR ERVK -390 361 1 2 807 28198 118 19 25 chr1 29172044 29175624 -168019808 + L1_Mus2 LINE L1 1717 5265 -618 2 807 3727 182 80 11 chr1 29175624 29176377 -168019055 - RMER17D2 LTR ERVK 0 809 5 2 807 28198 92 6 8 chr1 29176377 29177680 -168017752 + L1_Mus2 LINE L1 5266 6566 0 2 807 1079 271 65 19 chr1 29177892 29178201 -168017231 - ORR1D1 LTR MaLR -51 323 1 2 807 595 268 356 13 chr1 29178440 29178741 -168016691 - MTC LTR MaLR -5 416 13 2 807 920 102 0 0 chr1 29179021 29179149 -168016283 - B1_Mus1 SINE Alu -5 143 16 2 807 322 248 16 66 chr1 29179932 29180053 -168015379 + Lx7 LINE L1 7567 7681 -15 3 807 218 307 140 54 chr1 29180628 29180721 -168014711 - B3 SINE B2 -115 101 1 3 807 22 56 0 0 chr1 29181127 29181163 -168014269 + AT_rich Low_complexity Low_complexity 1 36 0 3 807 717 125 0 0 chr1 29181619 29181739 -168013693 + (TC)n Simple_repeat Simple_repeat 2 121 0 3 807 1436 221 48 66 chr1 29183188 29183644 -168011788 - Lx9 LINE L1 -1 7643 7196 3 807 619 298 112 18 chr1 29183638 29183915 -168011517 - Lx8 LINE L1 -130 7343 7041 3 807 610 327 19 0 chr1 29185378 29185586 -168009846 - B3 SINE B2 -4 212 1 3 807 21 0 0 0 chr1 29185767 29185788 -168009644 + AT_rich Low_complexity Low_complexity 1 21 0 3 807 417 369 127 13 chr1 29185793 29186029 -168009403 + B4A SINE B4 8 270 -22 3 807 22 35 0 0 chr1 29187153 29187182 -168008250 + AT_rich Low_complexity Low_complexity 1 29 0 3 807 1479 287 26 3 chr1 29187480 29187871 -168007561 - MTD LTR MaLR -14 405 6 3 807 588 171 0 52 chr1 29188900 29189036 -168006396 - L1Md_F3 LINE L1 -5 6579 6451 3 807 1253 183 58 0 chr1 29189036 29189276 -168006156 - Lx2 LINE L1 -39 6958 6705 3 807 402 315 34 27 chr1 29189715 29189862 -168005570 - B3 SINE B2 -44 172 25 3 807 1000 219 40 32 chr1 29189929 29190179 -168005253 + ORR1C2-int LTR MaLR 1119 1370 0 3 807 1183 208 88 59 chr1 29190184 29190557 -168004875 + ORR1C2 LTR MaLR 1 384 0 3 807 326 304 58 17 chr1 29190879 29191053 -168004379 - L1M4 LINE L1 -1709 4437 4257 3 807 254 297 34 0 chr1 29191089 29191207 -168004225 + (TA)n Simple_repeat Simple_repeat 1 122 0 3 807 378 320 35 10 chr1 29191447 29191649 -168003783 + Lx9 LINE L1 7266 7472 -172 3 807 27 29 0 0 chr1 29191830 29191864 -168003568 + AT_rich Low_complexity Low_complexity 1 34 0 3 807 22 70 0 0 chr1 29191986 29192029 -168003403 + AT_rich Low_complexity Low_complexity 1 43 0 3 807 29 28 0 0 chr1 29192502 29192538 -168002894 + AT_rich Low_complexity Low_complexity 1 36 0 3 807 219 167 14 83 chr1 29192664 29192736 -168002696 + A-rich Low_complexity Low_complexity 2 68 0 3 807 933 87 0 0 chr1 29192965 29193091 -168002341 - B1_Mus1 SINE Alu -9 139 14 3 807 307 234 132 146 chr1 29193369 29193439 -168001993 - RLTR20B3 LTR ERVK 0 528 459 3 807 297 0 0 0 chr1 29193439 29193472 -168001960 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 807 586 232 82 118 chr1 29193472 29193825 -168001607 - RLTR20B3 LTR ERVK -106 471 20 3 807 24 53 0 0 chr1 29193844 29193882 -168001550 + AT_rich Low_complexity Low_complexity 1 38 0 3 807 4025 142 28 61 chr1 29193903 29194740 -168000692 + RMER17D2 LTR ERVK 1 809 0 3 807 576 298 101 23 chr1 29194991 29195249 -168000183 - MTD LTR MaLR -139 280 3 3 807 476 342 29 19 chr1 29195265 29195471 -167999961 - Lx8 LINE L1 -1061 6412 6205 3 807 416 247 10 10 chr1 29195465 29195563 -167999869 + Lx7 LINE L1 5633 5730 -1966 3 807 293 277 65 18 chr1 29195557 29195726 -167999706 - Lx7 LINE L1 -1760 5936 5760 3 807 388 322 49 16 chr1 29195975 29196098 -167999334 - ID_B1 SINE B4 -10 214 88 3 807 527 275 15 40 chr1 29196277 29196478 -167998954 - Lx9 LINE L1 -210 7434 7239 3 807 461 204 0 0 chr1 29196491 29196599 -167998833 + Lx9 LINE L1 7516 7623 -21 3 807 269 216 11 0 chr1 29196888 29196976 -167998456 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 807 507 123 0 0 chr1 29197182 29197263 -167998169 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 807 21 36 0 0 chr1 29197265 29197293 -167998139 + AT_rich Low_complexity Low_complexity 1 28 0 3 807 3175 148 0 4 chr1 29198128 29198645 -167996787 - Lx LINE L1 -5 6649 6135 3 807 374 134 0 82 chr1 29200859 29200932 -167994500 - B1_Mus1 SINE Alu -81 67 1 3 807 1164 113 48 106 chr1 29201043 29201114 -167994318 - ORR1A2 LTR MaLR 0 327 247 3 807 2945 84 5 8 chr1 29201114 29201511 -167993921 + MTA_Mm LTR MaLR 1 396 0 3 807 1164 113 48 106 chr1 29201511 29201666 -167993766 - ORR1A2 LTR MaLR -81 246 114 3 807 540 0 0 0 chr1 29202113 29202173 -167993259 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 807 592 357 28 69 chr1 29202178 29202467 -167992965 - B4 SINE B4 -14 278 2 3 807 6928 91 21 9 chr1 29203412 29204953 -167990479 - L1_Mus1 LINE L1 0 6567 5001 3 807 939 148 0 0 chr1 29204948 29205103 -167990329 + L1_Mus1 LINE L1 4873 5027 -856 3 807 915 127 0 0 chr1 29206607 29206757 -167988675 + (TTCC)n Simple_repeat Simple_repeat 3 152 0 3 807 26 50 0 0 chr1 29206866 29206906 -167988526 + AT_rich Low_complexity Low_complexity 1 40 0 3 807 1210 171 16 33 chr1 29206912 29207154 -167988278 - Lx LINE L1 -1 6653 6416 3 807 21 0 0 0 chr1 29209524 29209545 -167985887 + AT_rich Low_complexity Low_complexity 1 21 0 3 807 393 333 53 73 chr1 29210145 29210391 -167985041 + B4 SINE B4 3 243 -49 3 807 378 0 0 0 chr1 29210398 29210440 -167984992 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 807 516 32 0 0 chr1 29210440 29210502 -167984930 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 807 23 68 0 0 chr1 29211238 29211282 -167984150 + AT_rich Low_complexity Low_complexity 1 44 0 3 807 239 0 32 0 chr1 29213063 29213094 -167982338 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 807 263 75 0 0 chr1 29213098 29213138 -167982294 - L1_Mus1 LINE L1 -386 5497 5458 3 807 7476 85 1 1 chr1 29213138 29214193 -167981239 + L1_Mus1 LINE L1 5513 6567 0 3 807 293 316 81 10 chr1 29216073 29216172 -167979260 - B3A SINE B2 -92 106 1 3 807 280 324 26 52 chr1 29216248 29216440 -167978992 - L1MA6 LINE L1 -228 6072 5886 3 807 3267 225 112 8 chr1 29216503 29217382 -167978050 - Lx2B LINE L1 -10 6990 6021 3 807 23 78 0 0 chr1 29217844 29217895 -167977537 + AT_rich Low_complexity Low_complexity 1 51 0 3 807 1698 203 50 3 chr1 29218119 29218227 -167977205 - Lx2 LINE L1 -4 6993 6868 3 807 216 0 0 0 chr1 29218227 29218251 -167977181 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 3 807 1698 203 50 3 chr1 29218251 29218502 -167976930 - Lx2 LINE L1 -130 6867 6618 3 807 4784 161 26 2 chr1 29218500 29218725 -167976707 + Lx LINE L1 5010 5234 -649 3 807 456 19 0 0 chr1 29218725 29218778 -167976654 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 807 4784 161 26 2 chr1 29218778 29218882 -167976550 + Lx LINE L1 5235 5353 -530 3 807 5321 46 8 1 chr1 29218882 29219539 -167975893 + L1Md_F2 LINE L1 5921 6581 -1 3 807 4784 117 14 1 chr1 29219539 29220151 -167975281 + Lx LINE L1 5354 5973 -663 3 807 760 106 0 0 chr1 29220155 29220278 -167975154 + Lx LINE L1 6411 6533 -121 3 807 3595 150 38 8 chr1 29220280 29220814 -167974618 + Lx LINE L1 5977 6518 -136 3 807 228 67 0 0 chr1 29220814 29220844 -167974588 + (TGGG)n Simple_repeat Simple_repeat 4 33 0 3 807 3595 150 38 8 chr1 29220844 29220961 -167974471 + Lx LINE L1 6519 6647 -7 3 807 468 91 0 0 chr1 29221123 29221189 -167974243 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 807 6353 55 1 1 chr1 29221463 29222258 -167973174 + L1Md_F2 LINE L1 5776 6570 -12 3 807 1495 62 16 5 chr1 29222407 29222600 -167972832 - B2_Mm2 SINE B2 0 195 1 3 807 3485 76 6 2 chr1 29222630 29223105 -167972327 - L1_Mus2 LINE L1 -1 6565 6089 3 807 26 30 0 0 chr1 29223695 29223728 -167971704 + AT_rich Low_complexity Low_complexity 1 33 0 3 807 303 246 0 0 chr1 29223857 29223914 -167971518 + Lx8 LINE L1 7274 7330 -143 3 807 379 310 0 44 chr1 29224130 29224265 -167971167 + RSINE1 SINE B4 6 134 -31 3 807 22 0 0 0 chr1 29224279 29224301 -167971131 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 24 53 0 0 chr1 29224414 29224452 -167970980 + AT_rich Low_complexity Low_complexity 1 38 0 3 807 386 217 19 0 chr1 29224788 29224894 -167970538 + Lx9 LINE L1 7535 7642 -2 3 807 24 53 0 0 chr1 29225428 29225466 -167969966 + AT_rich Low_complexity Low_complexity 1 38 0 3 807 319 206 42 32 chr1 29225478 29225573 -167969859 - Lx9 LINE L1 -29 7615 7520 3 807 183 80 0 0 chr1 29225991 29226016 -167969416 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 807 549 237 9 0 chr1 29226161 29226275 -167969157 - MTD LTR MaLR -134 285 171 3 807 2511 186 53 20 chr1 29226301 29226401 -167969031 - RLTR11A2 LTR ERVK 0 527 428 3 807 2710 179 19 2 chr1 29226401 29226888 -167968544 - Lx2 LINE L1 -1 6996 6502 3 807 2511 186 53 20 chr1 29226888 29227297 -167968135 - RLTR11A2 LTR ERVK -100 427 1 3 807 261 363 8 16 chr1 29227315 29227441 -167967991 - MTD LTR MaLR -284 135 11 3 807 24 53 0 0 chr1 29227470 29227508 -167967924 + AT_rich Low_complexity Low_complexity 1 38 0 3 807 26 101 0 0 chr1 29227556 29227645 -167967787 + AT_rich Low_complexity Low_complexity 1 89 0 3 807 180 0 0 0 chr1 29227931 29227951 -167967481 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 3 807 1449 208 54 3 chr1 29228058 29228352 -167967080 - Lx5 LINE L1 -1 7049 6741 3 807 673 300 5 70 chr1 29228456 29228671 -167966761 + B3 SINE B2 11 211 -5 3 807 216 411 11 0 chr1 29228727 29228817 -167966615 - B1F SINE Alu -58 91 1 3 100 546 330 76 20 chr1 29229014 29229212 -167966220 + MTD LTR MaLR 109 317 -102 3 808 195 42 0 0 chr1 29229340 29229364 -167966068 + (T)n Simple_repeat Simple_repeat 1 24 0 3 808 479 337 118 8 chr1 29229588 29229851 -167965581 - Lx9 LINE L1 -848 6796 6505 3 808 621 105 333 0 chr1 29229889 29229994 -167965438 + B1_Mus1 SINE Alu 2 141 -7 3 808 617 58 12 0 chr1 29229998 29230084 -167965348 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 808 21 36 0 0 chr1 29230161 29230189 -167965243 + AT_rich Low_complexity Low_complexity 1 28 0 3 808 668 174 22 0 chr1 29230405 29230543 -167964889 + Lx2 LINE L1 6857 6997 0 3 808 207 0 0 0 chr1 29230836 29230859 -167964573 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 808 21 0 0 0 chr1 29231216 29231237 -167964195 + AT_rich Low_complexity Low_complexity 1 21 0 3 808 5583 55 6 6 chr1 29231795 29232514 -167962918 - L1Md_F2 LINE L1 0 6582 5864 3 808 958 84 0 0 chr1 29232552 29232683 -167962749 + B1_Mus2 SINE Alu 17 147 0 3 808 231 36 0 0 chr1 29232687 29232715 -167962717 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 808 441 54 0 0 chr1 29232978 29233034 -167962398 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 808 23 0 0 0 chr1 29233289 29233312 -167962120 + AT_rich Low_complexity Low_complexity 1 23 0 4 808 796 165 33 38 chr1 29233388 29233571 -167961861 - Lx3B LINE L1 -3 6978 6797 4 808 6115 147 9 72 chr1 29233568 29234837 -167960595 - Lx3B LINE L1 -299 6674 5452 4 808 4306 113 21 4 chr1 29234841 29235517 -167959915 + Lx3B LINE L1 4715 5401 -485 4 808 22 35 0 0 chr1 29235575 29235604 -167959828 + AT_rich Low_complexity Low_complexity 1 29 0 4 808 187 31 30 30 chr1 29235672 29235705 -167959727 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 4 808 7153 97 18 4 chr1 29236532 29237541 -167957891 - RLTR13D5 LTR ERVK 0 1023 1 4 808 285 29 0 0 chr1 29237562 29237596 -167957836 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 808 735 133 6 12 chr1 29237718 29237885 -167957547 + CT-rich Low_complexity Low_complexity 1 166 0 4 808 309 26 0 0 chr1 29237917 29237955 -167957477 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 808 992 125 0 0 chr1 29238005 29238149 -167957283 + B1_Mm SINE Alu 4 147 0 4 808 228 269 49 37 chr1 29238155 29238236 -167957196 - Lx8 LINE L1 -190 7283 7202 4 808 183 80 0 0 chr1 29238268 29238293 -167957139 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 808 27 29 0 0 chr1 29238649 29238683 -167956749 + AT_rich Low_complexity Low_complexity 1 34 0 4 808 760 293 143 11 chr1 29238757 29239106 -167956326 + Lx8 LINE L1 7074 7468 -5 4 808 206 236 14 14 chr1 29239578 29239651 -167955781 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 4 808 411 118 0 0 chr1 29240217 29240293 -167955139 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 808 21 36 0 0 chr1 29240476 29240504 -167954928 + AT_rich Low_complexity Low_complexity 1 28 0 4 808 206 151 0 36 chr1 29240867 29240922 -167954510 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 4 808 441 0 0 0 chr1 29240925 29240974 -167954458 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 808 225 0 0 0 chr1 29240974 29240998 -167954434 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 808 306 164 0 0 chr1 29241348 29241403 -167954029 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 808 464 161 0 14 chr1 29242509 29242648 -167952784 + (CAGA)n Simple_repeat Simple_repeat 4 140 0 4 808 195 69 0 0 chr1 29242690 29242719 -167952713 + (T)n Simple_repeat Simple_repeat 1 29 0 4 808 24 0 0 0 chr1 29242884 29242908 -167952524 + AT_rich Low_complexity Low_complexity 1 24 0 4 808 2274 144 51 8 chr1 29244063 29244455 -167950977 - Lx2 LINE L1 -51 6946 6538 4 808 1135 131 19 82 chr1 29245234 29245448 -167949984 - L1_Mur2 LINE L1 -427 5450 5247 4 808 5080 10 0 5 chr1 29245448 29246030 -167949402 - L1Md_T LINE L1 0 6582 6004 4 808 1135 131 19 82 chr1 29246030 29246072 -167949360 - L1_Mur2 LINE L1 -631 5246 5210 4 808 429 246 43 39 chr1 29246140 29246348 -167949084 + Lx LINE L1 6498 6653 -1 4 808 918 273 11 70 chr1 29246681 29246965 -167948467 - Lx6 LINE L1 -11 7449 7183 4 808 562 139 1 47 chr1 29246963 29247091 -167948341 - Lx6 LINE L1 -1622 5838 5725 4 808 456 19 0 0 chr1 29247096 29247149 -167948283 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 808 3119 191 54 17 chr1 29247153 29247799 -167947633 - RLTR17 LTR ERVK -22 670 1 4 808 779 248 55 9 chr1 29247810 29248030 -167947402 - Lx6 LINE L1 -217 5663 5434 4 808 3497 254 117 29 chr1 29248036 29248385 -167947047 - RMER12 LTR ERVK -127 1195 778 4 808 690 65 0 0 chr1 29248385 29248477 -167946955 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 4 808 3497 196 92 30 chr1 29248477 29249209 -167946223 - RMER12 LTR ERVK -545 777 1 4 808 4021 231 149 24 chr1 29249209 29250643 -167944789 - Lx6 LINE L1 -1055 4822 3209 4 808 3463 222 94 14 chr1 29250689 29250878 -167944554 - Lx6 LINE L1 -3530 2350 2161 4 808 243 0 0 0 chr1 29250878 29250905 -167944527 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 808 3463 222 94 14 chr1 29250905 29251693 -167943739 - Lx6 LINE L1 -3720 2160 1307 4 808 419 35 18 0 chr1 29251693 29251750 -167943682 + (TTA)n Simple_repeat Simple_repeat 2 59 0 4 808 3463 241 104 6 chr1 29251750 29252065 -167943367 - Lx6 LINE L1 -4574 1306 939 4 808 2841 82 14 12 chr1 29252070 29252491 -167942941 - L1_Mus2 LINE L1 0 6566 6145 4 808 2831 113 17 5 chr1 29252491 29252909 -167942523 + L1_Mm LINE L1 5255 5677 -206 4 808 393 246 63 0 chr1 29252914 29253056 -167942376 - Lx6 LINE L1 -6709 1019 869 4 808 285 247 35 0 chr1 29253106 29253191 -167942241 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 4 808 363 392 38 8 chr1 29253326 29253717 -167941715 - Lx6 LINE L1 -7277 451 49 4 808 260 289 0 0 chr1 29253825 29253901 -167941531 + T-rich Low_complexity Low_complexity 1 76 0 4 808 349 342 25 30 chr1 29253936 29254135 -167941297 + B3A SINE B2 1 198 0 4 808 275 85 21 0 chr1 29254227 29254274 -167941158 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 808 1127 68 7 0 chr1 29254274 29254420 -167941012 - B1_Mm SINE Alu 0 147 1 4 808 269 162 13 13 chr1 29254437 29254512 -167940920 - Lx9 LINE L1 -7 7637 7563 4 808 593 309 29 19 chr1 29254862 29255070 -167940362 - Lx9 LINE L1 -427 7217 7008 4 808 407 252 34 0 chr1 29255076 29255195 -167940237 + Lx9 LINE L1 7343 7465 -179 4 808 369 0 0 0 chr1 29255469 29255510 -167939922 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 808 342 0 0 0 chr1 29255788 29255826 -167939606 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 4 808 289 319 20 37 chr1 29256000 29256125 -167939307 - MLT1F2 LTR MaLR -261 419 227 4 808 879 268 177 16 chr1 29256473 29256784 -167938648 + Lx9 LINE L1 7069 7429 -215 4 808 2168 100 12 3 chr1 29256799 29257120 -167938312 - L1_Mus3 LINE L1 0 6638 6315 4 808 449 296 45 0 chr1 29257532 29257664 -167937768 - B1_Mur2 SINE Alu -10 139 2 4 808 262 305 83 37 chr1 29257566 29257675 -167937757 - B4 SINE B4 -98 194 81 4 808 819 245 18 27 chr1 29257778 29258000 -167937432 + URR1B DNA MER1_type 5 224 -1 4 808 270 0 0 0 chr1 29258145 29258175 -167937257 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 808 310 399 54 32 chr1 29258185 29258462 -167936970 - MLT1E1A LTR MaLR -68 612 330 4 808 383 268 109 47 chr1 29258748 29259022 -167936410 + L1M3 LINE L1 2386 2676 -3464 4 808 220 336 16 116 chr1 29259158 29259279 -167936153 + B1F SINE Alu 1 109 -40 4 808 737 189 179 25 chr1 29259286 29259482 -167935950 + URR1A DNA MER1_type 1 226 0 4 808 330 272 86 6 chr1 29259815 29259978 -167935454 + L1M3 LINE L1 2915 3090 -3050 4 808 291 98 0 0 chr1 29260027 29260078 -167935354 + Lx2B LINE L1 6946 6996 -4 4 808 21 0 0 0 chr1 29261475 29261496 -167933936 + AT_rich Low_complexity Low_complexity 1 21 0 4 808 25 0 0 0 chr1 29261785 29261810 -167933622 + AT_rich Low_complexity Low_complexity 1 25 0 4 808 1621 241 63 87 chr1 29262466 29263197 -167932235 + RMER6A LTR ERVK 1 710 -10 4 808 24 53 0 0 chr1 29263388 29263426 -167932006 + AT_rich Low_complexity Low_complexity 1 38 0 4 808 486 0 0 0 chr1 29263905 29263959 -167931473 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 808 848 153 6 0 chr1 29263965 29264122 -167931310 - Lx2 LINE L1 0 6997 6840 4 808 1345 127 49 25 chr1 29264122 29264365 -167931067 + Lx2 LINE L1 6470 6718 -279 4 808 30 0 0 0 chr1 29264734 29264764 -167930668 + AT_rich Low_complexity Low_complexity 1 30 0 4 808 525 230 193 17 chr1 29266070 29266251 -167929181 - B3 SINE B2 -2 214 2 4 808 30 0 0 0 chr1 29267086 29267116 -167928316 + AT_rich Low_complexity Low_complexity 1 30 0 4 808 368 310 116 70 chr1 29267117 29267558 -167927874 - L1MDa LINE L1 -4250 2383 1923 4 808 24 0 0 0 chr1 29268083 29268107 -167927325 + AT_rich Low_complexity Low_complexity 1 24 0 4 808 23 0 0 0 chr1 29268181 29268204 -167927228 + AT_rich Low_complexity Low_complexity 1 23 0 4 808 434 314 0 25 chr1 29269109 29269230 -167926202 - ID_B1 SINE B4 -26 198 81 4 808 478 222 47 27 chr1 29269786 29269934 -167925498 + Lx7 LINE L1 7542 7692 -4 4 808 233 337 20 39 chr1 29270074 29270176 -167925256 + LTR40a LTR ERVL 1 100 -419 4 808 499 244 0 25 chr1 29270273 29270391 -167925041 - B1_Mur2 SINE Alu 0 149 35 4 808 568 323 141 21 chr1 29272262 29272583 -167922849 - ORR1D2 LTR MaLR -2 357 1 4 808 303 161 0 0 chr1 29273077 29273133 -167922299 + T-rich Low_complexity Low_complexity 2 57 0 4 808 598 281 65 25 chr1 29273379 29273580 -167921852 + B3 SINE B2 5 213 -3 4 808 302 307 20 74 chr1 29274695 29274711 -167920721 - B1_Mur4 SINE Alu 0 150 137 4 808 695 219 14 0 chr1 29274711 29274857 -167920575 - B1_Mur4 SINE Alu -1 149 2 4 808 394 256 19 35 chr1 29274857 29274988 -167920444 - PB1D10 SINE Alu -14 136 10 4 808 1174 189 56 37 chr1 29275146 29275415 -167920017 + RLTR46 LTR ERVK 42 315 -5 4 808 23 33 0 0 chr1 29275421 29275451 -167919981 + AT_rich Low_complexity Low_complexity 1 30 0 4 808 1090 95 0 0 chr1 29275678 29275825 -167919607 + B1_Mus1 SINE Alu 2 148 0 4 808 219 103 0 0 chr1 29275825 29275864 -167919568 + (A)n Simple_repeat Simple_repeat 1 39 0 4 808 762 60 0 0 chr1 29276010 29276110 -167919322 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 4 808 1161 108 0 0 chr1 29277130 29277306 -167918126 + (GGA)n Simple_repeat Simple_repeat 2 177 0 4 808 1368 67 0 0 chr1 29277306 29277486 -167917946 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 808 522 152 0 0 chr1 29277677 29277769 -167917663 + CT-rich Low_complexity Low_complexity 4 95 0 4 808 735 12 0 0 chr1 29279057 29279141 -167916291 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 4 808 1271 111 17 0 chr1 29279275 29279455 -167915977 + Lx LINE L1 6367 6549 -105 4 808 300 217 0 115 chr1 29279455 29279533 -167915899 - RLTR28 LTR ERVL -455 69 1 4 808 290 163 7 0 chr1 29279602 29279678 -167915754 + Lx2 LINE L1 6926 6996 -1 4 808 279 0 0 0 chr1 29279944 29279975 -167915457 + (A)n Simple_repeat Simple_repeat 1 31 0 4 808 369 0 0 0 chr1 29280240 29280281 -167915151 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 4 808 242 0 61 0 chr1 29280282 29280315 -167915117 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 4 808 203 171 0 24 chr1 29280347 29280389 -167915043 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 808 2003 160 180 7 chr1 29280553 29280791 -167914641 + RLTR28 LTR ERVL 1 314 -210 4 808 4112 58 0 17 chr1 29280791 29281331 -167914101 - L1Md_F2 LINE L1 0 6582 6052 4 808 2003 160 180 7 chr1 29281331 29281514 -167913918 + RLTR28 LTR ERVL 315 495 -29 4 808 504 308 87 0 chr1 29281591 29281786 -167913646 - B3 SINE B2 -3 213 2 4 808 32 43 0 0 chr1 29282041 29282087 -167913345 + AT_rich Low_complexity Low_complexity 1 46 0 4 808 270 0 0 0 chr1 29282101 29282131 -167913301 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 808 967 175 45 31 chr1 29282325 29282549 -167912883 + Lx2A1 LINE L1 6776 7002 -6 5 808 653 173 0 21 chr1 29285016 29285158 -167910274 + (TA)n Simple_repeat Simple_repeat 2 140 0 5 808 411 21 0 0 chr1 29285167 29285215 -167910217 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 808 4545 173 5 14 chr1 29285879 29286728 -167908704 - Lx2 LINE L1 0 6997 6157 5 808 283 307 119 0 chr1 29286731 29286832 -167908600 + RSINE1 SINE B4 28 140 -25 5 808 24 32 0 0 chr1 29287476 29287507 -167907925 + AT_rich Low_complexity Low_complexity 1 31 0 5 808 24 0 0 0 chr1 29289326 29289350 -167906082 + AT_rich Low_complexity Low_complexity 1 24 0 5 808 621 12 0 35 chr1 29289490 29289575 -167905857 + B1_Mm SINE Alu 66 147 0 5 808 204 61 102 0 chr1 29289575 29289624 -167905808 + A-rich Low_complexity Low_complexity 1 54 0 5 808 302 178 3 86 chr1 29289966 29290060 -167905372 - Lx7 LINE L1 0 7696 7622 5 808 28 79 0 0 chr1 29291282 29291345 -167904087 + AT_rich Low_complexity Low_complexity 1 63 0 5 808 1243 205 104 0 chr1 29291720 29292027 -167903405 - Lx9 LINE L1 0 7644 7306 5 808 528 330 27 32 chr1 29292047 29292235 -167903197 - RMER13B LTR ERVK -16 892 706 5 808 4022 71 0 0 chr1 29292267 29292789 -167902643 - L1Md_F3 LINE L1 -744 5139 4618 5 808 3342 68 0 0 chr1 29292786 29293214 -167902218 + L1Md_F3 LINE L1 5159 5586 -297 5 808 8168 40 0 3 chr1 29293214 29294204 -167901228 + L1Md_F3 LINE L1 5587 6573 -11 5 808 1168 226 30 40 chr1 29294249 29294548 -167900884 - RMER13B LTR ERVK -335 573 278 5 808 1593 216 31 47 chr1 29294572 29295018 -167900414 - RMER17B LTR ERVK -519 439 1 5 808 3042 274 64 14 chr1 29295019 29295966 -167899466 - Lx9 LINE L1 -336 7308 6314 5 808 22 56 0 0 chr1 29296191 29296227 -167899205 + AT_rich Low_complexity Low_complexity 1 36 0 5 808 462 327 32 25 chr1 29296371 29296528 -167898904 + RSINE1 SINE B4 4 161 -4 5 808 276 253 32 0 chr1 29297996 29298091 -167897341 - Lx9 LINE L1 -2 7642 7545 5 808 468 0 0 0 chr1 29298104 29298156 -167897276 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 808 458 103 13 0 chr1 29298156 29298233 -167897199 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 808 507 201 5 10 chr1 29298234 29298426 -167897006 + (CATATA)n Simple_repeat Simple_repeat 1 191 0 5 808 1312 281 65 3 chr1 29298437 29298808 -167896624 - Lx9 LINE L1 -228 7416 7023 5 808 555 196 120 37 chr1 29299636 29299853 -167895579 + Lx9 LINE L1 7402 7636 -8 5 808 348 156 0 0 chr1 29300031 29300121 -167895311 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 808 247 356 0 0 chr1 29300122 29300254 -167895178 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 5 808 4690 142 20 75 chr1 29300279 29301187 -167894245 + Lx LINE L1 5796 6653 -1 5 808 256 211 745 13 chr1 29301422 29301581 -167893851 + Lx9 LINE L1 6690 6965 -679 5 808 5264 35 0 0 chr1 29301598 29302261 -167893171 + L1Md_T LINE L1 5547 6209 -373 5 808 4412 92 0 0 chr1 29302265 29302887 -167892545 + L1_Mm LINE L1 3663 4284 -1599 5 808 5588 76 8 1 chr1 29302923 29303774 -167891658 - L1Md_F LINE L1 -3910 1973 1100 5 808 5911 75 127 3 chr1 29303774 29304633 -167890799 + L1Md_F2 LINE L1 5601 6565 -17 5 808 3338 126 90 12 chr1 29304633 29305097 -167890335 - L1Md_F LINE L1 -5517 1099 613 5 808 3523 58 9 0 chr1 29305105 29305552 -167889880 + L1Md_F3 LINE L1 6134 6584 0 5 808 186 143 0 0 chr1 29306066 29306101 -167889331 + (A)n Simple_repeat Simple_repeat 1 35 0 5 808 260 208 26 13 chr1 29306670 29306748 -167888684 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 808 22 70 0 0 chr1 29307046 29307089 -167888343 + AT_rich Low_complexity Low_complexity 1 43 0 5 808 244 288 70 21 chr1 29307332 29307474 -167887958 - Lx9 LINE L1 -49 7595 7447 5 808 698 173 55 135 chr1 29307505 29307705 -167887727 - B2_Mm2 SINE B2 -10 185 2 5 808 336 0 136 0 chr1 29309156 29309215 -167886217 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 5 808 201 141 0 135 chr1 29309223 29309297 -167886135 + T-rich Low_complexity Low_complexity 1 64 0 5 808 944 245 73 15 chr1 29309332 29309752 -167885680 - Lx4B LINE L1 -1 7057 6514 5 808 608 67 44 0 chr1 29309750 29309840 -167885592 - L1_Mm LINE L1 -1402 4481 4388 5 808 6746 75 8 5 chr1 29309798 29310745 -167884687 + L1Md_F2 LINE L1 5634 6582 0 5 808 4002 199 22 2 chr1 29310745 29311551 -167883881 - Lx4B LINE L1 -529 6529 5708 5 808 2380 139 35 23 chr1 29311551 29311984 -167883448 + Lx4B LINE L1 5254 5691 -186 5 808 1079 269 140 21 chr1 29311994 29312413 -167883019 - RMER5 LTR ERV1 -62 472 4 5 808 943 249 5 0 chr1 29312701 29312906 -167882526 - B3 SINE B2 -9 207 2 5 808 601 276 52 52 chr1 29313625 29313760 -167881672 - Lx6 LINE L1 0 7460 7323 5 808 180 0 0 0 chr1 29313760 29313780 -167881652 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 808 601 276 52 52 chr1 29313780 29313953 -167881479 - Lx6 LINE L1 -138 7322 7152 5 808 329 292 135 7 chr1 29315899 29316047 -167879385 + L2 LINE L2 2551 2717 -702 5 808 501 17 0 0 chr1 29316666 29316724 -167878708 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 808 24 32 0 0 chr1 29317366 29317397 -167878035 + AT_rich Low_complexity Low_complexity 1 31 0 5 808 21 0 0 0 chr1 29317544 29317565 -167877867 + AT_rich Low_complexity Low_complexity 1 21 0 5 808 309 363 45 57 chr1 29319522 29319855 -167875577 + Lx8 LINE L1 6964 7292 -181 5 808 457 327 146 94 chr1 29319991 29320416 -167875016 - Lx8 LINE L1 -800 6673 6227 5 808 333 0 0 0 chr1 29320500 29320537 -167874895 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 808 693 230 0 0 chr1 29320537 29320715 -167874717 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 808 306 50 0 0 chr1 29321047 29321087 -167874345 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 808 21 71 0 0 chr1 29321272 29321314 -167874118 + AT_rich Low_complexity Low_complexity 1 42 0 5 808 7327 65 3 8 chr1 29321672 29322639 -167872793 - L1Md_F2 LINE L1 -13 6569 5629 5 808 1588 176 47 128 chr1 29322655 29323123 -167872309 - RLTR23 LTR ERV1 0 430 1 5 808 180 0 0 0 chr1 29323389 29323409 -167872023 + (A)n Simple_repeat Simple_repeat 1 20 0 5 808 25 31 0 0 chr1 29323954 29323986 -167871446 + AT_rich Low_complexity Low_complexity 1 32 0 5 808 228 190 12 23 chr1 29324711 29324797 -167870635 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 808 32 91 0 0 chr1 29324985 29325073 -167870359 + AT_rich Low_complexity Low_complexity 1 88 0 5 808 635 254 116 10 chr1 29325313 29325512 -167869920 - ORR1D1 LTR MaLR 0 374 155 5 808 245 286 142 7 chr1 29325537 29325685 -167869747 - Lx4B LINE L1 -4 7054 6887 5 808 390 262 70 47 chr1 29325702 29325830 -167869602 - ORR1D1 LTR MaLR -235 139 9 5 808 530 341 44 31 chr1 29325908 29326135 -167869297 + MTE2b LTR MaLR 5 234 -145 5 808 265 109 36 0 chr1 29326373 29326428 -167869004 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 808 984 129 0 7 chr1 29327094 29327242 -167868190 + B1_Mus2 SINE Alu 1 147 0 5 808 194 0 39 0 chr1 29327244 29327270 -167868162 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 808 206 250 15 0 chr1 29327284 29327352 -167868080 + (TAA)n Simple_repeat Simple_repeat 3 71 0 5 808 22 0 0 0 chr1 29327551 29327573 -167867859 + AT_rich Low_complexity Low_complexity 1 22 0 5 808 31 58 0 0 chr1 29328306 29328358 -167867074 + AT_rich Low_complexity Low_complexity 1 52 0 5 808 855 239 210 45 chr1 29328772 29329258 -167866174 + RLTR12A LTR ERVK 3 568 0 5 808 642 179 0 0 chr1 29330098 29330210 -167865222 + Lx5 LINE L1 6271 6382 -668 5 808 286 296 0 90 chr1 29330914 29331003 -167864429 + MTEb LTR MaLR 1 81 -298 5 808 284 254 125 50 chr1 29331003 29331034 -167864398 + MLT2B3 LTR ERVL 1 129 -425 5 808 33 43 0 0 chr1 29331475 29331522 -167863910 + AT_rich Low_complexity Low_complexity 1 47 0 5 808 2205 91 0 0 chr1 29332422 29332718 -167862714 - L1_Mus1 LINE L1 0 6567 6272 5 808 2997 118 123 8 chr1 29332718 29333213 -167862219 - L1Md_F LINE L1 -5752 767 216 5 808 389 329 106 41 chr1 29333414 29333857 -167861575 - Lx9 LINE L1 -174 7470 6999 5 808 2171 54 14 0 chr1 29333876 29334155 -167861277 - L1Md_T LINE L1 -1 6581 6299 5 808 10868 105 1 8 chr1 29334155 29335780 -167859652 - L1_Mm LINE L1 -2223 3660 2047 5 808 564 117 0 0 chr1 29335777 29335854 -167859578 + L1Md_F2 LINE L1 5510 5586 -297 5 808 6844 85 19 6 chr1 29335855 29336837 -167858595 + L1Md_F2 LINE L1 5588 6582 0 5 808 1592 259 83 59 chr1 29336842 29337282 -167858150 - RMER20B LTR ERVK -84 543 88 5 808 548 65 0 13 chr1 29337282 29337360 -167858072 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 808 216 0 0 0 chr1 29337360 29337383 -167858049 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 808 917 152 0 12 chr1 29337383 29337550 -167857882 + L1Md_F2 LINE L1 6418 6582 0 5 808 1592 259 83 59 chr1 29337550 29337612 -167857820 - RMER20B LTR ERVK -540 87 29 5 808 1318 134 5 10 chr1 29337613 29337817 -167857615 - RLTR23 LTR ERV1 0 430 228 5 808 586 179 9 0 chr1 29337814 29337920 -167857512 - HY1 scRNA scRNA -5 107 1 5 808 183 80 0 0 chr1 29338446 29338471 -167856961 + (CATA)n Simple_repeat Simple_repeat 2 26 0 5 808 1406 306 71 57 chr1 29338584 29339333 -167856099 + Lx9 LINE L1 6417 7175 -469 5 808 822 81 72 14 chr1 29339392 29339530 -167855902 + L1Md_F2 LINE L1 6437 6582 0 5 808 336 255 59 26 chr1 29339995 29340148 -167855284 + L1M4 LINE L1 2796 2953 -3193 5 808 316 274 96 45 chr1 29340458 29340657 -167854775 + L1M4 LINE L1 3446 3654 -2492 5 808 595 37 24 0 chr1 29341439 29341521 -167853911 - BC1_Mm scRNA scRNA -68 84 1 5 808 238 292 41 14 chr1 29341483 29341556 -167853876 - ZP3AR Satellite Satellite -130 82 8 5 808 358 304 43 0 chr1 29341896 29342011 -167853421 - B3A SINE B2 -78 120 1 5 808 399 408 20 0 chr1 29342047 29342199 -167853233 + B3A SINE B2 2 156 -42 5 808 444 111 0 0 chr1 29342310 29342382 -167853050 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 808 29 60 0 0 chr1 29343113 29343163 -167852269 + AT_rich Low_complexity Low_complexity 1 50 0 5 808 708 118 15 7 chr1 29344046 29344182 -167851250 + L1_Mus4 LINE L1 6497 6633 -3 5 808 2375 106 0 22 chr1 29344295 29344313 -167851119 - L1_Mus4 LINE L1 -623 6013 6002 6 808 494 148 73 9 chr1 29344313 29344422 -167851010 - Lx LINE L1 -5 6649 6534 6 808 11605 171 42 39 chr1 29344422 29347107 -167848325 - L1_Mus4 LINE L1 -635 6001 3302 6 808 1565 257 29 20 chr1 29347097 29347649 -167847783 - L1_Mur3 LINE L1 -1545 4335 3779 6 808 25 75 0 0 chr1 29347941 29347994 -167847438 + AT_rich Low_complexity Low_complexity 1 53 0 6 808 23 0 0 0 chr1 29348926 29348949 -167846483 + AT_rich Low_complexity Low_complexity 1 23 0 6 808 22 70 0 0 chr1 29350226 29350269 -167845163 + AT_rich Low_complexity Low_complexity 1 43 0 6 808 770 319 47 83 chr1 29350487 29350873 -167844559 + MTE2a LTR MaLR 3 374 -5 6 808 605 142 0 9 chr1 29352619 29352733 -167842699 + GA-rich Low_complexity Low_complexity 4 116 0 6 808 252 120 0 0 chr1 29353907 29353957 -167841475 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 808 1448 190 53 15 chr1 29353961 29354303 -167841129 + RLTR15 LTR ERVK 5 359 0 6 808 228 200 0 0 chr1 29354474 29354534 -167840898 + CT-rich Low_complexity Low_complexity 1 60 0 6 808 247 323 56 76 chr1 29354560 29354811 -167840621 - Lx7 LINE L1 -391 7305 7060 6 808 290 265 153 20 chr1 29354815 29354965 -167840467 + L1MA7 LINE L1 5820 5989 -302 6 808 252 275 15 37 chr1 29354989 29355125 -167840307 + L1MA7 LINE L1 6038 6170 -121 6 808 25 0 0 0 chr1 29355176 29355201 -167840231 + AT_rich Low_complexity Low_complexity 1 25 0 6 808 30 59 0 0 chr1 29355521 29355572 -167839860 + AT_rich Low_complexity Low_complexity 1 51 0 6 808 245 330 44 0 chr1 29355859 29355950 -167839482 + MLT1C-int LTR MaLR 371 465 -944 6 808 587 220 6 0 chr1 29356053 29356221 -167839211 + (TG)n Simple_repeat Simple_repeat 2 170 0 6 808 556 370 39 21 chr1 29356258 29356542 -167838890 - B4A SINE B4 -2 290 2 6 808 470 364 56 64 chr1 29357219 29357592 -167837840 + MLT1C LTR MaLR 18 387 -80 6 808 2466 151 0 39 chr1 29357739 29358174 -167837258 - Lx2 LINE L1 -3 6994 6577 6 808 208 236 18 0 chr1 29358347 29358370 -167837062 + (TATATG)n Simple_repeat Simple_repeat 4 27 0 6 808 189 0 0 0 chr1 29358370 29358391 -167837041 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 808 208 236 18 0 chr1 29358391 29358422 -167837010 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 6 808 342 267 33 0 chr1 29358504 29358594 -167836838 - Lx9 LINE L1 -385 7259 7167 6 808 814 227 78 55 chr1 29358611 29358882 -167836550 - Lx9 LINE L1 -532 7112 6836 6 808 1109 110 23 28 chr1 29358938 29359115 -167836317 - B2_Mm2 SINE B2 -19 176 1 6 808 812 344 43 10 chr1 29359169 29359560 -167835872 + Lx9 LINE L1 6585 6988 -656 6 808 921 122 48 0 chr1 29359560 29359707 -167835725 + L1_Mus2 LINE L1 6411 6564 -2 6 12 7659 107 18 1 chr1 29359821 29361202 -167834230 - L1_Mus3 LINE L1 0 6638 5251 6 809 432 15 46 0 chr1 29361202 29361267 -167834165 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 809 4383 154 49 1 chr1 29361267 29361403 -167834029 - L1_Mus3 LINE L1 -633 5250 5079 6 809 574 103 0 0 chr1 29361400 29361487 -167833945 + L1_Mus3 LINE L1 4984 5070 -813 6 809 441 316 58 38 chr1 29361510 29361750 -167833682 + Lx9 LINE L1 7049 7293 -351 6 809 504 0 0 0 chr1 29361932 29361988 -167833444 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 809 536 90 0 0 chr1 29362254 29362332 -167833100 + L1_Mus2 LINE L1 6489 6566 0 6 809 288 91 0 0 chr1 29363402 29363446 -167831986 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 809 885 10 0 0 chr1 29363871 29363973 -167831459 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 809 210 37 0 0 chr1 29363974 29364001 -167831431 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 809 216 236 28 0 chr1 29364753 29364825 -167830607 + (TTA)n Simple_repeat Simple_repeat 3 76 0 6 809 180 0 0 0 chr1 29364866 29364886 -167830546 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 809 484 262 9 0 chr1 29365422 29365529 -167829903 + RSINE1 SINE B4 25 132 -33 6 809 41 36 0 0 chr1 29365627 29365682 -167829750 + AT_rich Low_complexity Low_complexity 1 55 0 6 809 195 0 56 28 chr1 29365687 29365723 -167829709 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 809 842 296 36 4 chr1 29365786 29366064 -167829368 - Lx6 LINE L1 -26 7434 7148 6 809 3217 41 8 0 chr1 29366182 29366575 -167828857 + MTA_Mm LTR MaLR 1 396 0 6 809 285 29 0 0 chr1 29367898 29367932 -167827500 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 809 1263 99 0 0 chr1 29369027 29369240 -167826192 + (GGAAA)n Simple_repeat Simple_repeat 1 213 0 6 809 273 273 0 0 chr1 29369874 29370035 -167825397 + (CA)n Simple_repeat Simple_repeat 2 162 0 6 809 344 308 14 0 chr1 29370051 29370194 -167825238 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 809 316 326 0 0 chr1 29370435 29370524 -167824908 + MLT1C LTR MaLR 274 362 -105 6 809 401 298 83 8 chr1 29370878 29371103 -167824329 - MER90 LTR ERV1 -262 352 114 6 809 639 96 0 0 chr1 29371411 29371515 -167823917 - L1_Mus1 LINE L1 0 6567 6464 6 809 23 0 0 0 chr1 29371710 29371733 -167823699 + AT_rich Low_complexity Low_complexity 1 23 0 6 809 236 265 0 14 chr1 29371797 29371866 -167823566 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 6 809 4173 261 134 24 chr1 29372357 29373913 -167821519 - Lx7 LINE L1 0 7696 5969 6 809 34 0 0 0 chr1 29373924 29373958 -167821474 + AT_rich Low_complexity Low_complexity 1 34 0 6 809 1041 258 76 91 chr1 29374391 29374537 -167820895 - Lx3C LINE L1 -2 6998 6815 6 809 432 0 0 0 chr1 29374537 29374585 -167820847 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 809 714 12 0 0 chr1 29374585 29374667 -167820765 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 809 1041 254 83 101 chr1 29374667 29374989 -167820443 - Lx3C LINE L1 -162 6814 6529 6 809 954 96 0 0 chr1 29375234 29375391 -167820041 + (TC)n Simple_repeat Simple_repeat 1 157 0 6 809 303 93 0 0 chr1 29376101 29376144 -167819288 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 809 332 187 0 62 chr1 29376217 29376297 -167819135 - RMER1C Other Other -19 1323 1249 6 809 543 43 0 0 chr1 29376334 29376404 -167819028 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 809 570 41 0 0 chr1 29376404 29376477 -167818955 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 809 997 240 56 74 chr1 29376493 29376712 -167818720 - RMER1C Other Other -117 1225 1019 6 809 5023 91 10 1 chr1 29376712 29377402 -167818030 - L1_Mus2 LINE L1 0 6566 5871 6 809 927 114 7 7 chr1 29377402 29377543 -167817889 - B1_Mus1 SINE Alu -3 145 5 6 809 997 240 56 74 chr1 29377543 29377578 -167817854 - RMER1C Other Other -324 1018 991 6 809 194 62 31 0 chr1 29377578 29377610 -167817822 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 809 997 240 56 74 chr1 29377610 29377690 -167817742 - RMER1C Other Other -352 990 896 6 809 1413 162 110 5 chr1 29377650 29377954 -167817478 - Lx3B LINE L1 -298 6711 6356 6 809 2304 164 3 3 chr1 29377952 29378319 -167817113 - L1VL4 LINE L1 -5723 579 213 6 809 3054 128 30 45 chr1 29378303 29378864 -167816568 - Lx3B LINE L1 -604 6369 5827 6 809 1247 216 98 11 chr1 29378866 29379152 -167816280 + Lx3A LINE L1 6663 6973 -8 6 809 5922 145 45 10 chr1 29379176 29380281 -167815151 + Lx LINE L1 5384 6514 -140 6 809 183 80 0 0 chr1 29380281 29380306 -167815126 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 6 809 5922 139 55 10 chr1 29380306 29380417 -167815015 + Lx LINE L1 6515 6646 -8 6 809 1167 336 26 11 chr1 29380473 29380852 -167814580 - RMER1C Other Other -468 874 490 6 809 278 392 57 6 chr1 29382096 29382255 -167813177 - MLT1E1A LTR MaLR -495 185 19 6 809 861 297 45 42 chr1 29382911 29383404 -167812028 - MTC-int LTR MaLR -281 977 389 6 809 468 310 235 31 chr1 29383405 29383753 -167811679 + MTD LTR MaLR 1 419 0 6 809 229 277 23 35 chr1 29383753 29383839 -167811593 - MTC-int LTR MaLR -863 395 311 6 809 390 283 84 79 chr1 29383890 29384105 -167811327 - MTC-int LTR MaLR -1042 216 1 6 809 889 293 98 21 chr1 29384133 29384471 -167810961 - MTD LTR MaLR -51 368 5 6 809 344 16 30 60 chr1 29385758 29385825 -167809607 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 6 809 981 268 91 37 chr1 29385847 29386239 -167809193 + MTD LTR MaLR 1 393 -26 6 809 21 0 0 0 chr1 29386246 29386267 -167809165 + AT_rich Low_complexity Low_complexity 1 21 0 6 809 305 24 24 0 chr1 29387205 29387247 -167808185 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 809 1129 133 55 0 chr1 29388148 29388329 -167807103 + B2_Mm2 SINE B2 1 191 -4 6 809 405 0 0 0 chr1 29388477 29388522 -167806910 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 809 22 70 0 0 chr1 29388602 29388645 -167806787 + AT_rich Low_complexity Low_complexity 1 43 0 6 809 409 381 114 55 chr1 29388688 29389160 -167806272 - MER77 LTR ERVL -57 550 51 6 809 1357 159 45 38 chr1 29389380 29389398 -167806034 - Lx2 LINE L1 -1 6996 6978 6 809 183 42 0 0 chr1 29389398 29389422 -167806010 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 809 1357 159 45 38 chr1 29389422 29389690 -167805742 - Lx2 LINE L1 -20 6977 6708 6 809 37009 29 0 7 chr1 29389704 29394846 -167800586 + L1Md_T LINE L1 489 5586 -297 6 809 8076 52 0 0 chr1 29394846 29395842 -167799590 + L1Md_T LINE L1 5587 6582 0 6 809 189 0 0 0 chr1 29396233 29396254 -167799178 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 809 222 242 0 0 chr1 29397657 29397723 -167797709 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 809 963 166 19 43 chr1 29397887 29398095 -167797337 + Lx3B LINE L1 6768 6970 -3 6 809 291 114 0 0 chr1 29398103 29398147 -167797285 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 809 277 272 12 0 chr1 29398170 29398251 -167797181 + GA-rich Low_complexity Low_complexity 2 83 0 6 809 3188 133 9 2 chr1 29400058 29400592 -167794840 - L1_Mm LINE L1 -1543 4340 3803 6 809 7154 103 4 3 chr1 29400587 29401597 -167793835 + L1_Mus3 LINE L1 5628 6638 0 6 809 22 35 0 0 chr1 29401632 29401661 -167793771 + AT_rich Low_complexity Low_complexity 1 29 0 6 809 236 277 15 0 chr1 29402790 29402855 -167792577 + GA-rich Low_complexity Low_complexity 2 67 0 6 809 181 184 118 109 chr1 29403419 29403529 -167791903 + L3 LINE CR1 2525 2635 -1854 6 809 444 37 0 0 chr1 29404428 29404482 -167790950 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 809 495 45 0 64 chr1 29404483 29404577 -167790855 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 6 809 383 274 49 0 chr1 29405326 29405428 -167790004 - MTE2a LTR MaLR 0 379 273 6 809 719 148 253 0 chr1 29405430 29405592 -167789840 + RMER6D LTR ERVK 1 203 -517 6 809 27 0 0 0 chr1 29405971 29405998 -167789434 + AT_rich Low_complexity Low_complexity 1 27 0 6 809 315 390 8 8 chr1 29406330 29406454 -167788978 - RSINE1 SINE B4 -15 150 27 6 809 221 231 39 0 chr1 29406513 29406565 -167788867 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 6 809 21 0 0 0 chr1 29406644 29406665 -167788767 + AT_rich Low_complexity Low_complexity 1 21 0 6 809 279 0 0 0 chr1 29406712 29406743 -167788689 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 6 809 596 81 11 0 chr1 29406995 29407082 -167788350 + (TC)n Simple_repeat Simple_repeat 1 88 0 7 809 1064 114 11 0 chr1 29407083 29407258 -167788174 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 7 809 421 152 0 0 chr1 29407265 29407331 -167788101 + CT-rich Low_complexity Low_complexity 4 69 0 7 809 506 207 150 23 chr1 29407340 29407513 -167787919 - B2_Mm2 SINE B2 0 195 1 7 809 243 0 0 0 chr1 29407592 29407619 -167787813 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 809 349 252 8 42 chr1 29407861 29407981 -167787451 - Lx8 LINE L1 -1012 6461 6346 7 809 3686 106 11 11 chr1 29408152 29408714 -167786718 - L1_Mus3 LINE L1 -1 6637 6076 7 809 653 337 92 14 chr1 29408797 29409289 -167786143 + Lx8 LINE L1 6811 7350 -123 7 809 27 0 0 0 chr1 29409381 29409408 -167786024 + AT_rich Low_complexity Low_complexity 1 27 0 7 809 247 292 0 43 chr1 29411101 29411194 -167784238 - MLT1A1 LTR MaLR 0 408 320 7 809 261 0 0 0 chr1 29411240 29411269 -167784163 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 809 392 73 29 0 chr1 29411354 29411422 -167784010 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 7 809 374 305 122 0 chr1 29411441 29411572 -167783860 + MTD LTR MaLR 259 405 -14 7 809 477 0 0 0 chr1 29413694 29413747 -167781685 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 809 387 413 14 32 chr1 29414108 29414393 -167781039 + MLT1A0 LTR MaLR 24 303 -62 7 809 22 0 0 0 chr1 29414838 29414860 -167780572 + AT_rich Low_complexity Low_complexity 1 22 0 7 809 629 13 13 0 chr1 29415002 29415080 -167780352 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 809 2616 181 60 6 chr1 29415118 29415618 -167779814 - RLTR11A LTR ERVK 0 528 2 7 809 569 319 87 32 chr1 29415805 29416174 -167779258 - BGLII_B LTR ERVK -47 394 6 7 809 702 260 84 107 chr1 29416174 29416576 -167778856 - MT2A LTR ERVL -76 525 1 7 809 4789 246 45 27 chr1 29416576 29417225 -167778207 - MERVL_2A-int LTR ERVL 0 5761 5091 7 809 995 76 18 48 chr1 29417225 29417391 -167778041 - L1_Mus3 LINE L1 -8 6630 6470 7 809 4789 246 45 27 chr1 29417391 29417997 -167777435 - MERVL_2A-int LTR ERVL -671 5090 4483 7 809 365 299 0 17 chr1 29417998 29418117 -167777315 + ORR1C2-int LTR MaLR 1033 1149 -221 7 809 423 0 0 0 chr1 29418117 29418164 -167777268 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 809 371 271 11 3 chr1 29418198 29418299 -167777133 - ORR1C1 LTR MaLR -116 262 119 7 809 180 0 0 0 chr1 29418299 29418319 -167777113 + (CAGAGA)n Simple_repeat Simple_repeat 4 23 0 7 809 239 280 32 56 chr1 29418319 29418342 -167777090 - ORR1C1 LTR MaLR -211 118 93 7 809 213 299 0 0 chr1 29418351 29418428 -167777004 + GA-rich Low_complexity Low_complexity 1 77 0 7 809 666 147 0 0 chr1 29418464 29418593 -167776839 + (CA)n Simple_repeat Simple_repeat 2 130 0 7 809 768 220 48 29 chr1 29418595 29418801 -167776631 + ORR1C2-int LTR MaLR 1161 1370 0 7 809 764 272 68 106 chr1 29418803 29418991 -167776441 + ORR1C2 LTR MaLR 3 172 -212 7 809 270 0 0 0 chr1 29418991 29419021 -167776411 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 809 501 17 0 0 chr1 29419021 29419078 -167776354 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 809 764 272 68 106 chr1 29419078 29419283 -167776149 + ORR1C2 LTR MaLR 173 381 -3 7 809 215 242 20 29 chr1 29419283 29419385 -167776047 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 809 23 0 0 0 chr1 29420336 29420359 -167775073 + AT_rich Low_complexity Low_complexity 1 23 0 7 809 21 36 0 0 chr1 29421375 29421403 -167774029 + AT_rich Low_complexity Low_complexity 1 28 0 7 809 180 125 0 0 chr1 29421957 29421989 -167773443 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 7 809 586 349 45 70 chr1 29422008 29422411 -167773021 - Lx8 LINE L1 -1 7472 7080 7 809 805 114 17 22 chr1 29422474 29422653 -167772779 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 7 809 276 196 103 106 chr1 29422690 29422840 -167772592 + L1M3 LINE L1 5594 5744 -424 7 809 1183 74 0 0 chr1 29423044 29423192 -167772240 + B1_Mus1 SINE Alu 1 148 0 7 809 462 131 0 0 chr1 29423195 29423294 -167772138 + (A)n Simple_repeat Simple_repeat 1 99 0 7 809 323 359 0 0 chr1 29423961 29424053 -167771379 - PB1D10 SINE Alu -8 109 18 7 809 211 416 10 19 chr1 29423978 29424081 -167771351 - ID_B1 SINE B4 -51 173 72 7 809 504 360 6 22 chr1 29424108 29424287 -167771145 + B3A SINE B2 3 178 -38 7 809 332 255 74 11 chr1 29424726 29424821 -167770611 - Lx9 LINE L1 -1004 6640 6540 7 809 869 270 8 29 chr1 29424823 29425067 -167770365 + Lx9 LINE L1 6890 7128 -516 7 809 38063 13 1 7 chr1 29425069 29430668 -167764764 + L1Md_A LINE L1 23 5586 -297 7 809 8735 17 0 0 chr1 29430668 29431663 -167763769 + L1Md_A LINE L1 5587 6581 -1 7 809 981 271 58 7 chr1 29431670 29431963 -167763469 + Lx9 LINE L1 7122 7429 -215 7 809 213 94 0 0 chr1 29431974 29432006 -167763426 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 809 238 262 0 12 chr1 29432012 29432093 -167763339 + Lx9 LINE L1 7548 7627 -17 7 809 444 336 65 17 chr1 29432318 29432548 -167762884 + MER2 DNA MER2_type 105 345 0 7 809 2224 209 87 32 chr1 29432963 29433617 -167761815 - RMER6C LTR ERVK 0 690 1 7 809 24 77 0 0 chr1 29434128 29434180 -167761252 + AT_rich Low_complexity Low_complexity 1 52 0 7 809 25 0 0 0 chr1 29434830 29434855 -167760577 + AT_rich Low_complexity Low_complexity 1 25 0 7 809 242 320 61 10 chr1 29434986 29435084 -167760348 + B1_Mus1 SINE Alu 24 126 -22 7 809 23 68 0 0 chr1 29435143 29435187 -167760245 + AT_rich Low_complexity Low_complexity 1 44 0 7 809 671 38 0 1 chr1 29435267 29435358 -167760074 - L1Md_F2 LINE L1 -283 6355 6266 7 809 1146 99 0 27 chr1 29435358 29435544 -167759888 + L1Md_F2 LINE L1 6400 6580 -2 7 809 398 272 24 54 chr1 29436061 29436228 -167759204 + L1VL1 LINE L1 237 398 -6024 7 809 343 294 39 45 chr1 29436345 29436523 -167758909 + L1Md_F LINE L1 553 729 -5790 7 809 1062 206 25 0 chr1 29436504 29436742 -167758690 + L1Md_F LINE L1 628 871 -5648 7 809 19802 185 7 32 chr1 29436743 29439857 -167755575 + L1_Mus1 LINE L1 1863 4867 -1019 7 809 258 32 0 0 chr1 29439857 29439888 -167755544 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 7 809 19802 121 11 14 chr1 29439888 29441569 -167753863 + L1_Mus1 LINE L1 4868 6565 -2 7 809 275 352 48 60 chr1 29441607 29441876 -167753556 - Charlie12 DNA MER1_type -11 2862 2597 7 809 796 259 18 9 chr1 29442196 29442418 -167753014 - URR1A DNA MER1_type -1 225 2 7 809 480 35 0 0 chr1 29442974 29443032 -167752400 + (CATA)n Simple_repeat Simple_repeat 3 60 0 7 809 213 357 0 0 chr1 29443550 29443620 -167751812 + CT-rich Low_complexity Low_complexity 1 70 0 7 809 21170 172 23 7 chr1 29444388 29449454 -167745978 - Lx LINE L1 -1 6653 1501 7 809 237 212 29 57 chr1 29449489 29449559 -167745873 + MLT1E1A LTR MaLR 150 217 -463 7 809 2238 85 24 59 chr1 29449594 29449933 -167745499 + ORR1A2 LTR MaLR 1 327 0 7 809 447 52 0 0 chr1 29450139 29450197 -167745235 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 809 1085 234 85 48 chr1 29450802 29451195 -167744237 + MT2A LTR ERVL 1 558 -43 7 809 206 105 26 0 chr1 29451195 29451233 -167744199 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 809 395 281 21 0 chr1 29451542 29451638 -167743794 - MT2A LTR ERVL -75 458 361 7 809 803 314 118 87 chr1 29452074 29452414 -167743018 + MTD LTR MaLR 1 370 -49 7 809 24 67 0 0 chr1 29454185 29454230 -167741202 + AT_rich Low_complexity Low_complexity 1 45 0 7 809 767 193 104 12 chr1 29454991 29455154 -167740278 - RMER1C Other Other -109 1233 1056 7 809 1509 236 19 194 chr1 29455444 29456185 -167739247 - RMER19C LTR ERVK 0 611 1 7 809 387 0 0 0 chr1 29456319 29456362 -167739070 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 809 395 336 60 0 chr1 29456385 29456519 -167738913 - B4 SINE B4 -96 196 55 7 809 249 224 0 0 chr1 29456671 29456729 -167738703 + GA-rich Low_complexity Low_complexity 3 60 0 7 809 749 272 5 68 chr1 29457873 29458057 -167737375 + B3A SINE B2 6 182 -16 7 809 687 25 0 0 chr1 29458057 29458138 -167737294 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 809 749 272 5 68 chr1 29458138 29458158 -167737274 + B3A SINE B2 183 197 -1 7 809 194 33 0 62 chr1 29458407 29458439 -167736993 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 809 1143 75 0 0 chr1 29458445 29458592 -167736840 - B1_Mus2 SINE Alu 0 147 1 7 809 213 39 0 0 chr1 29458771 29458797 -167736635 + (A)n Simple_repeat Simple_repeat 1 26 0 7 809 248 237 17 0 chr1 29459330 29459389 -167736043 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 809 206 139 23 0 chr1 29460136 29460166 -167735266 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 809 783 95 151 0 chr1 29460166 29460292 -167735140 - B1_Mus1 SINE Alu -2 146 2 7 809 206 139 23 0 chr1 29460292 29460304 -167735128 + (TTTA)n Simple_repeat Simple_repeat 2 13 0 7 809 3403 144 13 50 chr1 29460304 29460918 -167734514 - Lx2 LINE L1 -1 6996 6406 7 809 729 325 14 5 chr1 29461834 29462047 -167733385 + B3 SINE B2 1 215 -1 7 809 36 40 0 0 chr1 29462157 29462207 -167733225 + AT_rich Low_complexity Low_complexity 1 50 0 7 809 473 299 59 12 chr1 29463179 29463348 -167732084 + B3 SINE B2 3 179 -37 7 809 423 0 0 0 chr1 29463368 29463415 -167732017 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 809 21173 106 8 37 chr1 29463825 29470321 -167725111 - L1Md_T LINE L1 0 6582 439 7 809 552 315 43 70 chr1 29470500 29471056 -167724376 - L1MA4A LINE L1 -275 6022 5482 7 809 372 88 0 0 chr1 29471114 29471171 -167724261 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 809 640 350 95 0 chr1 29471350 29471593 -167723839 - B4A SINE B4 0 292 27 7 809 1716 105 0 0 chr1 29471924 29472172 -167723260 - L1Md_F2 LINE L1 -3257 2626 2379 7 809 20227 96 12 2 chr1 29472171 29473017 -167722415 + L1Md_F2 LINE L1 2622 3476 -2407 7 809 219 36 0 0 chr1 29473017 29473045 -167722387 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 809 20227 96 12 2 chr1 29473045 29474282 -167721150 + L1Md_F2 LINE L1 3477 4729 -1154 7 809 453 36 0 0 chr1 29474282 29474337 -167721095 + (TAA)n Simple_repeat Simple_repeat 3 57 0 7 809 20227 96 12 2 chr1 29474337 29475186 -167720246 + L1Md_F2 LINE L1 4730 5585 -298 7 809 7441 67 15 4 chr1 29475186 29476159 -167719273 + L1Md_F2 LINE L1 5587 6570 -12 7 809 922 294 68 10 chr1 29476188 29476480 -167718952 + MTD LTR MaLR 111 419 0 7 809 21 36 0 0 chr1 29477882 29477910 -167717522 + AT_rich Low_complexity Low_complexity 1 28 0 7 809 849 94 7 52 chr1 29479160 29479295 -167716137 + B1_Mm SINE Alu 19 147 0 7 809 279 0 0 0 chr1 29479297 29479328 -167716104 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 809 216 111 0 0 chr1 29479724 29479760 -167715672 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 7 809 204 40 0 0 chr1 29479767 29479792 -167715640 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 809 22 0 0 0 chr1 29480676 29480698 -167714734 + AT_rich Low_complexity Low_complexity 1 22 0 8 809 258 152 29 29 chr1 29481392 29481498 -167713934 + (TA)n Simple_repeat Simple_repeat 1 106 0 8 809 687 266 34 0 chr1 29482517 29482694 -167712738 + Lx6 LINE L1 6523 6705 -755 8 809 3517 168 16 3 chr1 29482719 29483334 -167712098 - Lx LINE L1 -44 5839 5217 8 809 4807 136 28 19 chr1 29483334 29484112 -167711320 + Lx LINE L1 5845 6629 -25 8 809 1383 296 35 45 chr1 29484160 29484648 -167710784 + Lx6 LINE L1 6952 7434 -26 8 809 274 61 20 20 chr1 29484653 29484703 -167710729 + (TAA)n Simple_repeat Simple_repeat 2 51 0 8 809 7038 61 11 0 chr1 29486854 29487752 -167707680 - L1Md_F2 LINE L1 -2 6580 5673 8 809 376 52 17 17 chr1 29487750 29487800 -167707632 - L1Md_F2 LINE L1 -598 5285 5235 8 809 2494 80 11 11 chr1 29487800 29488156 -167707276 + L1Md_F2 LINE L1 6227 6582 0 8 809 2908 108 0 2 chr1 29488172 29488591 -167706841 + L1_Mus4 LINE L1 5587 6004 -632 8 809 1443 72 0 10 chr1 29488598 29488793 -167706639 + L1_Mus4 LINE L1 6200 6392 -175 8 101 11553 88 3 2 chr1 29489975 29492470 -167702962 + L1Md_F2 LINE L1 387 2883 -3000 8 810 14418 73 2 8 chr1 29492455 29494402 -167701030 + L1Md_F2 LINE L1 3652 5586 -297 8 810 7310 75 1 18 chr1 29494402 29495402 -167700030 + L1Md_F2 LINE L1 5587 6569 -13 8 810 653 329 43 9 chr1 29495423 29495653 -167699779 + MTD LTR MaLR 60 297 -122 8 810 979 271 203 0 chr1 29495764 29496070 -167699362 + MTEa LTR MaLR 12 379 0 8 810 1074 287 94 3 chr1 29496077 29496395 -167699037 + MTEa-int LTR MaLR 10 356 -1224 8 810 13077 176 34 11 chr1 29496443 29496676 -167698756 - L1_Mm LINE L1 -1397 4486 4247 8 810 396 0 0 0 chr1 29496676 29496720 -167698712 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 810 13077 176 34 11 chr1 29496720 29499194 -167696238 - L1_Mm LINE L1 -1637 4246 1719 8 810 3461 146 41 26 chr1 29499195 29500000 -167695432 - RLTR13B4 LTR ERVK 0 893 44 8 810 1506 135 25 0 chr1 29500060 29500304 -167695128 - ETnERV3-int LTR ERVK -30 5778 5529 1 810 7602 124 53 83 chr1 29500318 29502008 -167693424 - RLTR45-int LTR ERVK -1173 6071 2862 2 810 315 0 0 0 chr1 29502008 29502043 -167693389 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 810 4638 185 105 44 chr1 29502043 29502221 -167693211 - RLTR45-int LTR ERVK -2545 2861 2678 2 810 359 255 108 9 chr1 29502228 29502339 -167693093 + RMER16 LTR ERVK 1 122 -411 4 810 2048 131 17 14 chr1 29502345 29502693 -167692739 - RLTR13B1 LTR ERVK -544 349 1 5 810 3431 91 2 10 chr1 29502693 29503259 -167692173 - L1VL4 LINE L1 -2191 1368 808 6 810 450 0 0 0 chr1 29503259 29503309 -167692123 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 810 3102 179 31 16 chr1 29503309 29503759 -167691673 - L1VL4 LINE L1 -5495 807 345 6 810 243 0 0 0 chr1 29503947 29503974 -167691458 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 810 576 254 267 38 chr1 29504428 29504666 -167690766 - ORR1C1 LTR MaLR -74 293 1 9 810 3639 156 12 8 chr1 29504823 29505462 -167689970 + Lx2 LINE L1 6356 6997 0 1 810 556 345 72 41 chr1 29506953 29507370 -167688062 + Lx8 LINE L1 6844 7273 -200 1 810 663 304 143 38 chr1 29507957 29508257 -167687175 + MTD LTR MaLR 50 382 -37 1 810 282 268 0 14 chr1 29508257 29508329 -167687103 - MTC LTR MaLR 0 421 351 1 810 1170 238 33 0 chr1 29509054 29509357 -167686075 - Lx9 LINE L1 -8 7636 7324 1 810 21 0 0 0 chr1 29509768 29509789 -167685643 + AT_rich Low_complexity Low_complexity 1 21 0 1 810 418 267 75 48 chr1 29509883 29510135 -167685297 - L1MA8 LINE L1 -53 6238 5980 1 810 5025 149 72 5 chr1 29510777 29511669 -167683763 - RMER17B LTR ERVK -6 952 1 1 810 1190 130 22 0 chr1 29512828 29513012 -167682420 + B2_Mm2 SINE B2 1 188 -7 1 810 297 342 18 113 chr1 29513902 29514070 -167681362 + B4A SINE B4 8 159 -133 1 810 366 23 0 0 chr1 29514129 29514172 -167681260 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 810 6189 137 31 40 chr1 29514201 29514494 -167680938 + Lx LINE L1 5491 5797 -857 2 810 1065 97 7 0 chr1 29514494 29514638 -167680794 + B1_Mus1 SINE Alu 1 145 -3 2 810 291 54 0 0 chr1 29514638 29514675 -167680757 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 810 6189 122 26 30 chr1 29514675 29515477 -167679955 + Lx LINE L1 5798 6582 -72 2 810 555 16 0 0 chr1 29515485 29515549 -167679883 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 810 2780 252 48 66 chr1 29515798 29517244 -167678188 + Lx7 LINE L1 4858 6309 -1151 2 810 983 293 23 0 chr1 29517247 29517547 -167677885 + Lx7 LINE L1 7142 7448 -12 2 810 883 243 22 18 chr1 29517669 29517895 -167677537 + MTC LTR MaLR 1 227 -194 2 810 652 57 11 0 chr1 29517890 29517978 -167677454 + B1_Mus2 SINE Alu 53 141 -6 2 810 363 23 0 0 chr1 29517980 29518024 -167677408 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 810 852 229 47 11 chr1 29518027 29518217 -167677215 + MTC LTR MaLR 225 421 0 2 810 541 217 9 9 chr1 29518249 29518356 -167677076 - Lx9 LINE L1 -402 7242 7136 2 810 468 0 0 0 chr1 29519142 29519194 -167676238 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 810 453 135 0 0 chr1 29519454 29519543 -167675889 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 810 612 322 114 53 chr1 29520351 29520902 -167674530 - Lx9 LINE L1 -620 7024 6440 2 810 7099 112 7 5 chr1 29521006 29522416 -167673016 + L1_Mus2 LINE L1 5151 6566 0 3 810 4224 86 0 63 chr1 29522698 29523346 -167672086 - L1_Mm LINE L1 -804 5079 4473 3 810 4569 88 5 2 chr1 29523346 29523972 -167671460 + L1Md_F2 LINE L1 5943 6570 -12 3 810 258 250 74 41 chr1 29523972 29524055 -167671377 + RMER15 LTR ERVL 451 537 -38 3 810 879 118 0 0 chr1 29524055 29524190 -167671242 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 3 810 258 250 74 41 chr1 29524190 29524227 -167671205 + RMER15 LTR ERVL 538 575 0 3 810 1051 100 0 16 chr1 29524614 29524797 -167670635 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 810 489 213 20 24 chr1 29524800 29525050 -167670382 + CT-rich Low_complexity Low_complexity 1 249 0 3 810 645 38 0 0 chr1 29525102 29525182 -167670250 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 810 1642 238 92 7 chr1 29525260 29525675 -167669757 - Lx5 LINE L1 -10 7040 6591 4 810 1201 158 92 0 chr1 29525672 29525868 -167669564 + Lx5 LINE L1 6402 6615 -435 4 810 24729 150 14 4 chr1 29525897 29531139 -167664293 - L1_Mus3 LINE L1 0 6638 1346 4 810 435 19 0 0 chr1 29531139 29531191 -167664241 + (TTC)n Simple_repeat Simple_repeat 1 52 0 4 810 954 175 0 15 chr1 29531191 29531595 -167663837 + CT-rich Low_complexity Low_complexity 1 398 0 4 810 1115 84 0 22 chr1 29531595 29531777 -167663655 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 810 182 311 0 19 chr1 29531777 29531808 -167663624 + polypyrimidine Low_complexity Low_complexity 4 34 0 4 810 1015 129 0 11 chr1 29531808 29531988 -167663444 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 810 5909 80 0 9 chr1 29531990 29532776 -167662656 - L1Md_F2 LINE L1 -23 6559 5781 4 810 9076 61 5 2 chr1 29532766 29534103 -167661329 - L1Md_F2 LINE L1 -1 6581 5246 4 810 219 69 0 0 chr1 29534103 29534132 -167661300 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 810 9076 80 15 1 chr1 29534132 29534728 -167660704 - L1Md_F2 LINE L1 -638 5245 4633 4 810 4048 160 77 29 chr1 29534724 29535598 -167659834 - L1VL1 LINE L1 -5294 1128 223 5 810 404 37 19 0 chr1 29535749 29535803 -167659629 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 810 677 310 120 23 chr1 29535827 29536669 -167658763 - L1M2 LINE L1 -325 5522 4610 5 810 1632 230 103 27 chr1 29538087 29538601 -167656831 + RLTR31B_Mm LTR ERVK 1 553 -4 5 810 198 0 0 0 chr1 29538688 29538710 -167656722 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 5 810 324 0 0 0 chr1 29538788 29538824 -167656608 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 810 472 366 20 30 chr1 29539051 29539251 -167656181 - B3A SINE B2 -15 201 4 5 810 23 54 0 0 chr1 29539873 29539910 -167655522 + AT_rich Low_complexity Low_complexity 1 37 0 5 810 260 211 14 0 chr1 29540056 29540127 -167655305 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 810 381 309 1 1 chr1 29540185 29540329 -167655103 + Lx5 LINE L1 5718 5897 -1153 5 810 543 128 0 0 chr1 29540334 29540420 -167655012 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 6 810 286 314 9 22 chr1 29541225 29541358 -167654074 - Lx7 LINE L1 -6 7690 7574 6 810 213 65 0 0 chr1 29542801 29542832 -167652600 + (CAA)n Simple_repeat Simple_repeat 1 31 0 6 810 1969 284 121 82 chr1 29542834 29543529 -167651903 - Lx7 LINE L1 -133 7563 6909 6 810 4665 124 37 3 chr1 29543529 29544266 -167651166 - Lx LINE L1 0 6654 5893 6 810 1969 284 121 82 chr1 29544266 29544787 -167650645 - Lx7 LINE L1 -788 6908 6300 6 810 3522 195 35 11 chr1 29544828 29545823 -167649609 - L1_Mur2 LINE L1 -4352 1525 503 6 810 429 20 0 0 chr1 29545959 29546009 -167649423 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 810 28 29 0 0 chr1 29546444 29546479 -167648953 + AT_rich Low_complexity Low_complexity 1 35 0 6 810 271 281 108 84 chr1 29546744 29547142 -167648290 + RLTR12B LTR ERVK 19 304 -55 6 810 408 91 0 0 chr1 29547226 29547292 -167648140 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 810 201 286 0 0 chr1 29547697 29547760 -167647672 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 810 1735 147 14 17 chr1 29548942 29549239 -167646193 + Lx3B LINE L1 6673 6968 -5 7 810 186 71 0 0 chr1 29549465 29549493 -167645939 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 810 2744 178 94 43 chr1 29549925 29550581 -167644851 - RMER6C LTR ERVK 0 690 1 7 810 231 36 0 0 chr1 29550769 29550797 -167644635 + (T)n Simple_repeat Simple_repeat 1 28 0 7 810 2779 41 3 0 chr1 29550804 29551145 -167644287 - MTA_Mm LTR MaLR -54 342 1 7 810 5477 34 0 1 chr1 29551145 29551824 -167643608 - MTA_Mm-int LTR MaLR 0 1098 421 7 810 246 100 33 16 chr1 29552001 29552062 -167643370 + (CAAAAA)n Simple_repeat Simple_repeat 3 64 0 7 810 649 304 125 13 chr1 29552828 29553205 -167642227 - MTD LTR MaLR 0 419 1 7 810 342 0 0 0 chr1 29553248 29553286 -167642146 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 810 346 211 110 87 chr1 29553632 29553850 -167641582 - Lx7 LINE L1 -4 7692 7470 7 810 279 0 0 0 chr1 29553865 29553896 -167641536 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 810 3832 251 31 30 chr1 29553978 29554672 -167640760 - Lx7 LINE L1 -414 7282 6581 7 810 1654 194 163 62 chr1 29554672 29555297 -167640135 - RMER6C LTR ERVK 0 690 3 8 810 3832 251 31 30 chr1 29555297 29555608 -167639824 - Lx7 LINE L1 -1116 6580 6276 7 810 513 0 0 0 chr1 29555666 29555723 -167639709 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 810 312 53 0 34 chr1 29556049 29556108 -167639324 - L1Md_A LINE L1 0 6582 6526 8 810 22 56 0 0 chr1 29556687 29556723 -167638709 + AT_rich Low_complexity Low_complexity 1 36 0 8 810 2015 155 7 61 chr1 29556999 29557411 -167638021 - Lx2 LINE L1 -5 6992 6603 8 810 401 204 64 9 chr1 29557990 29558099 -167637333 - Lx9 LINE L1 -160 7484 7370 8 810 20336 167 69 9 chr1 29558332 29563507 -167631925 - L1_Mus1 LINE L1 0 6567 1073 8 810 2497 234 53 41 chr1 29563506 29564432 -167631000 - L1_Mus1 LINE L1 -5433 1205 261 8 810 605 182 115 23 chr1 29564479 29564653 -167630779 - B2_Mm2 SINE B2 -5 190 1 8 810 595 210 8 31 chr1 29564655 29564757 -167630675 - Lx9 LINE L1 -382 7262 7162 8 810 438 127 0 0 chr1 29564757 29564828 -167630604 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 8 810 1332 69 0 0 chr1 29564828 29565001 -167630431 - L1_Mus1 LINE L1 -6 6561 6389 8 810 595 210 8 31 chr1 29565001 29565025 -167630407 - Lx9 LINE L1 -483 7161 7139 8 810 518 350 0 58 chr1 29565032 29565238 -167630194 + B3A SINE B2 5 198 0 9 810 21 36 0 0 chr1 29565303 29565331 -167630101 + AT_rich Low_complexity Low_complexity 1 28 0 9 810 362 243 57 23 chr1 29568304 29568535 -167626897 - L1M2 LINE L1 -1655 4485 4245 9 810 311 302 55 18 chr1 29568587 29568752 -167626680 - L1M2 LINE L1 -1978 4162 3992 9 810 304 206 13 64 chr1 29569030 29569108 -167626324 - RMER10A LTR ERVL -361 81 8 9 810 255 262 36 36 chr1 29569111 29569194 -167626238 - Lx7 LINE L1 -623 7073 6991 9 810 1043 89 7 20 chr1 29569314 29569463 -167625969 + B1_Mus1 SINE Alu 1 147 -1 9 810 22 35 0 0 chr1 29569789 29569818 -167625614 + AT_rich Low_complexity Low_complexity 1 29 0 9 810 202 155 52 0 chr1 29569846 29569904 -167625528 + (TATG)n Simple_repeat Simple_repeat 4 64 0 9 810 752 285 21 5 chr1 29570111 29570305 -167625127 + MTD LTR MaLR 14 210 -209 9 810 1260 299 58 10 chr1 29570307 29570705 -167624727 + Lx6 LINE L1 7017 7433 -27 9 810 193 179 14 43 chr1 29570708 29570730 -167624702 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1 810 207 114 0 0 chr1 29570730 29570765 -167624667 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 810 193 179 14 43 chr1 29570765 29570812 -167624620 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 1 810 671 269 70 10 chr1 29570863 29571062 -167624370 + MTD LTR MaLR 199 409 -10 9 810 262 61 0 39 chr1 29573318 29573369 -167622063 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 810 23 0 0 0 chr1 29573608 29573631 -167621801 + AT_rich Low_complexity Low_complexity 1 23 0 1 810 1439 260 48 31 chr1 29573911 29574391 -167621041 - RLTR11A2 LTR ERVK -33 494 7 1 810 1019 137 0 0 chr1 29574889 29575035 -167620397 + B1_Mus1 SINE Alu 2 147 -1 1 810 375 249 43 60 chr1 29575035 29575209 -167620223 + L1_Mur3 LINE L1 3215 3386 -2494 1 810 33 25 0 0 chr1 29575288 29575328 -167620104 + AT_rich Low_complexity Low_complexity 1 40 0 1 810 183 100 0 0 chr1 29575388 29575418 -167620014 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 810 863 114 44 44 chr1 29575418 29575555 -167619877 - B1_Mus1 SINE Alu -8 140 4 1 810 9464 103 12 28 chr1 29575644 29577121 -167618311 + L1_Mur1 LINE L1 1229 2708 -3178 1 810 555 16 0 0 chr1 29577121 29577185 -167618247 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 810 396 0 0 0 chr1 29577185 29577228 -167618204 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 810 9464 103 12 28 chr1 29577228 29577311 -167618121 + L1_Mur1 LINE L1 2709 2765 -3121 1 810 2837 103 2 2 chr1 29577311 29577711 -167617721 - MTB LTR MaLR 0 400 1 1 810 302 67 0 43 chr1 29577711 29577758 -167617674 - MTB-int LTR MaLR 0 1258 1214 1 810 8909 119 27 17 chr1 29577758 29578249 -167617183 - L1VL2 LINE L1 -1084 2531 2024 1 810 4911 26 17 0 chr1 29578249 29578831 -167616601 - L1Md_F3 LINE L1 0 6584 5993 1 810 8909 123 25 16 chr1 29578831 29580198 -167615234 - L1VL2 LINE L1 -1592 2023 660 1 810 243 0 0 0 chr1 29580206 29580233 -167615199 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 810 944 149 0 7 chr1 29580233 29580373 -167615059 - B1_Mus1 SINE Alu -8 140 1 1 810 4725 137 12 13 chr1 29580373 29580752 -167614680 - L1VL2 LINE L1 -5676 659 280 1 810 507 353 23 78 chr1 29581052 29581339 -167614093 + ORR1D2 LTR MaLR 1 262 -112 1 810 5029 144 11 71 chr1 29581727 29582686 -167612746 + RLTR13D6 LTR ERVK 1 902 0 1 810 29 28 0 0 chr1 29582954 29582990 -167612442 + AT_rich Low_complexity Low_complexity 1 36 0 1 810 9226 61 2 0 chr1 29583027 29584197 -167611235 - L1Md_F2 LINE L1 -77 5806 4635 1 810 5927 66 3 0 chr1 29584197 29584958 -167610474 + L1Md_F2 LINE L1 5820 6582 0 1 810 389 349 88 7 chr1 29585464 29585611 -167609821 - ID_B1 SINE B4 -57 167 9 1 810 350 351 81 7 chr1 29585782 29585931 -167609501 - RSINE1 SINE B4 -3 162 3 1 810 890 290 61 23 chr1 29586062 29586308 -167609124 + Lx8 LINE L1 7082 7331 -142 1 810 257 89 22 0 chr1 29586308 29586353 -167609079 + (CTA)n Simple_repeat Simple_repeat 1 46 0 1 810 890 290 61 23 chr1 29586353 29586452 -167608980 + Lx8 LINE L1 7332 7440 -33 1 810 272 436 33 27 chr1 29586690 29586874 -167608558 + ORR1E-int LTR MaLR 744 928 -652 1 810 413 207 8 8 chr1 29586880 29586997 -167608435 - Lx9 LINE L1 -22 7622 7506 1 810 515 345 90 47 chr1 29587104 29587896 -167607536 + ORR1E-int LTR MaLR 1 1566 -14 1 810 22 0 0 0 chr1 29588925 29588947 -167606485 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 21 57 0 0 chr1 29589270 29589305 -167606127 + AT_rich Low_complexity Low_complexity 1 35 0 1 810 383 307 35 24 chr1 29589505 29589675 -167605757 - Lx8 LINE L1 -519 6954 6783 1 810 324 127 0 0 chr1 29589947 29590002 -167605430 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 810 311 65 0 21 chr1 29590024 29590071 -167605361 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 810 249 204 21 21 chr1 29590247 29590392 -167605040 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 810 22 0 0 0 chr1 29590398 29590420 -167605012 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 1864 168 25 9 chr1 29590595 29590914 -167604518 + ORR1B2 LTR MaLR 1 324 -43 1 810 290 353 8 40 chr1 29591162 29591286 -167604146 - PB1D7 SINE Alu 0 120 1 1 810 854 257 43 14 chr1 29591679 29591888 -167603544 - B3 SINE B2 0 216 2 1 810 1089 261 28 4 chr1 29592172 29592426 -167603006 + ORR1B1 LTR MaLR 1 260 -134 1 810 319 182 0 0 chr1 29592437 29592492 -167602940 + ORR1B1 LTR MaLR 309 363 -4 1 810 562 273 148 57 chr1 29592535 29592799 -167602633 + Lx6 LINE L1 7096 7383 -77 1 810 685 292 26 0 chr1 29594027 29594219 -167601213 - B3 SINE B2 0 216 20 1 810 410 258 53 32 chr1 29594336 29594524 -167600908 - L1MA10 LINE L1 -21 6313 6122 1 810 28 95 0 0 chr1 29595602 29595686 -167599746 + AT_rich Low_complexity Low_complexity 1 84 0 1 810 226 258 0 16 chr1 29595869 29595932 -167599500 - L1_Mur3 LINE L1 -3186 2694 2633 1 810 4179 118 13 2 chr1 29595971 29596607 -167598825 - L1_Mus3 LINE L1 -15 6623 5981 1 810 1186 178 9 5 chr1 29596803 29597023 -167598409 - Lx3B LINE L1 -5 6976 6756 1 810 2762 167 22 4 chr1 29597023 29597486 -167597946 - Lx3B LINE L1 -415 6558 6088 1 810 624 161 51 0 chr1 29597481 29597599 -167597833 - Lx3B LINE L1 -996 5977 5854 1 810 1055 69 14 7 chr1 29597599 29597745 -167597687 - Lx3B LINE L1 -428 5458 5312 1 810 909 350 124 15 chr1 29597887 29598630 -167596802 - Lx8 LINE L1 -243 7230 6407 1 810 423 0 0 0 chr1 29599095 29599142 -167596290 + (TTA)n Simple_repeat Simple_repeat 3 49 0 1 810 273 197 16 0 chr1 29600340 29600401 -167595031 - ORR1E LTR MaLR -222 137 76 1 810 278 322 11 11 chr1 29600448 29600542 -167594890 + ORR1E LTR MaLR 1 94 -265 1 810 441 0 0 0 chr1 29601148 29601197 -167594235 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 1 810 975 25 0 0 chr1 29602187 29602305 -167593127 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 1 810 1381 12 12 0 chr1 29602305 29602472 -167592960 + (TC)n Simple_repeat Simple_repeat 2 170 0 1 810 21 36 0 0 chr1 29604023 29604051 -167591381 + AT_rich Low_complexity Low_complexity 1 28 0 1 810 3751 129 38 0 chr1 29604062 29604641 -167590791 - MT2B LTR ERVL 0 601 1 1 810 26 0 0 0 chr1 29605596 29605622 -167589810 + AT_rich Low_complexity Low_complexity 1 26 0 1 810 33 56 0 0 chr1 29606210 29606264 -167589168 + AT_rich Low_complexity Low_complexity 1 54 0 1 810 217 344 157 11 chr1 29606513 29606698 -167588734 - L2a LINE L2 -180 3246 3035 1 810 207 100 0 0 chr1 29609379 29609409 -167586023 + (T)n Simple_repeat Simple_repeat 1 30 0 1 810 751 164 0 12 chr1 29609898 29610071 -167585361 + (TA)n Simple_repeat Simple_repeat 1 171 0 1 810 27 49 0 0 chr1 29610268 29610309 -167585123 + AT_rich Low_complexity Low_complexity 1 41 0 1 810 1473 230 0 12 chr1 29610432 29610753 -167584679 - Lx2B LINE L1 -230 6770 6454 1 810 412 245 104 7 chr1 29610757 29610901 -167584531 + Lx4B LINE L1 6900 7057 -1 1 810 33281 89 8 4 chr1 29610915 29617110 -167578322 + L1Md_F2 LINE L1 359 6580 -2 1 810 1116 271 27 1 chr1 29618096 29618387 -167577045 - ORR1D1 LTR MaLR -67 303 1 1 810 5468 131 1 9 chr1 29620155 29621033 -167574399 - L1_Mus1 LINE L1 -488 5395 4525 1 810 4576 80 1 1 chr1 29621027 29621809 -167573623 + L1_Mus1 LINE L1 5402 6183 -384 1 811 30 0 0 0 chr1 29622397 29622427 -167573005 + AT_rich Low_complexity Low_complexity 1 30 0 1 811 25 0 0 0 chr1 29623061 29623086 -167572346 + AT_rich Low_complexity Low_complexity 1 25 0 1 811 923 107 9 14 chr1 29623086 29623243 -167572189 + B2_Mm2 SINE B2 2 168 -48 1 811 1712 131 33 73 chr1 29623243 29623572 -167571860 + Lx2 LINE L1 6615 6930 -67 1 811 408 20 0 0 chr1 29624067 29624116 -167571316 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 811 23 0 0 0 chr1 29624591 29624614 -167570818 + AT_rich Low_complexity Low_complexity 1 23 0 1 811 7536 68 1 14 chr1 29624872 29626487 -167568945 - L1Md_F2 LINE L1 -12 6570 4978 1 811 5166 81 42 26 chr1 29626504 29627276 -167568156 - L1_Mus2 LINE L1 0 6566 5783 1 811 1758 160 30 79 chr1 29627742 29627841 -167567591 + RMER17C LTR ERVK 3 102 -308 1 811 2753 57 0 0 chr1 29627841 29628173 -167567259 - IAPEY3_LTR LTR ERVK 0 332 1 1 811 1758 160 30 79 chr1 29628173 29628502 -167566930 + RMER17C LTR ERVK 103 410 0 1 811 397 213 43 0 chr1 29628655 29628749 -167566683 - Lx8 LINE L1 -641 6832 6735 1 811 340 333 10 0 chr1 29628806 29628902 -167566530 + B1F SINE Alu 11 107 -42 1 811 597 207 20 20 chr1 29629003 29629151 -167566281 + Lx9 LINE L1 7344 7491 -153 1 811 219 36 0 0 chr1 29629194 29629222 -167566210 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 811 279 0 0 0 chr1 29629220 29629251 -167566181 + (T)n Simple_repeat Simple_repeat 1 31 0 1 811 282 87 0 0 chr1 29629748 29629794 -167565638 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 811 1979 304 47 30 chr1 29629984 29630846 -167564586 - Lx9 LINE L1 -594 7050 6053 1 811 405 286 21 7 chr1 29630959 29631100 -167564332 - Lx9 LINE L1 -1712 5932 5790 1 811 29 78 0 0 chr1 29631112 29631176 -167564256 + AT_rich Low_complexity Low_complexity 1 64 0 1 811 24 32 0 0 chr1 29631235 29631266 -167564166 + AT_rich Low_complexity Low_complexity 1 31 0 1 811 222 224 13 0 chr1 29631961 29632120 -167563312 + T-rich Low_complexity Low_complexity 1 161 0 1 811 905 255 10 14 chr1 29632303 29632510 -167562922 - B3 SINE B2 -9 207 2 1 811 224 167 0 48 chr1 29633423 29633486 -167561946 + T-rich Low_complexity Low_complexity 1 60 0 1 811 972 134 10 49 chr1 29633486 29633690 -167561742 - Lx3A LINE L1 0 6981 6786 1 811 3730 101 4 6 chr1 29633699 29634236 -167561196 - L1_Mur1 LINE L1 -690 5196 4661 1 811 5760 154 36 6 chr1 29634233 29635220 -167560212 + Lx LINE L1 5625 6641 -13 1 811 3861 104 2 2 chr1 29635236 29635256 -167560176 - L1_Mur1 LINE L1 -1220 4666 4647 1 811 192 40 0 0 chr1 29635256 29635281 -167560151 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 811 3861 104 2 2 chr1 29635281 29635847 -167559585 - L1_Mur1 LINE L1 -1240 4646 4081 1 811 433 206 47 38 chr1 29635848 29635954 -167559478 - RLTR20B3 LTR ERVK -470 107 1 1 811 1059 70 28 0 chr1 29636540 29636683 -167558749 - B1_Mm SINE Alu 0 147 1 1 811 40789 11 0 6 chr1 29637063 29643455 -167551977 - L1Md_A LINE L1 0 6582 233 1 811 1445 250 22 22 chr1 29643495 29643863 -167551569 - Lx9 LINE L1 -302 7342 6975 1 811 367 187 7 113 chr1 29643867 29644018 -167551414 + Lx9 LINE L1 7444 7578 -66 1 811 441 0 0 0 chr1 29645073 29645122 -167550310 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 811 255 290 44 127 chr1 29645696 29645854 -167549578 - B2_Mm2 SINE B2 -50 145 1 1 811 6137 82 18 4 chr1 29645925 29646758 -167548674 + L1Md_F2 LINE L1 5733 6577 -5 2 811 330 311 69 112 chr1 29646764 29646952 -167548480 + B3A SINE B2 19 198 0 2 811 3965 199 26 6 chr1 29647440 29648272 -167547160 - Lx2B LINE L1 -3 6997 6149 2 811 371 281 70 0 chr1 29648699 29648813 -167546619 - PB1 SINE Alu -5 122 1 2 811 42 57 0 0 chr1 29648976 29649046 -167546386 + AT_rich Low_complexity Low_complexity 1 70 0 2 811 313 382 18 88 chr1 29649108 29649335 -167546097 + MER44B DNA MER2_type 30 240 -310 2 811 1161 281 7 7 chr1 29649352 29649632 -167545800 + Lx5 LINE L1 6766 7045 -5 2 811 23 0 0 0 chr1 29649632 29649655 -167545777 + AT_rich Low_complexity Low_complexity 1 23 0 2 811 183 162 0 0 chr1 29649660 29649697 -167545735 + GA-rich Low_complexity Low_complexity 3 39 0 2 811 239 303 0 0 chr1 29652058 29652124 -167543308 + HAL1 LINE L1 811 876 -1631 2 811 220 113 0 54 chr1 29652232 29652288 -167543144 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 2 811 201 39 0 0 chr1 29652311 29652337 -167543095 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 2 811 435 38 0 0 chr1 29652352 29652405 -167543027 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 811 216 0 0 0 chr1 29652405 29652428 -167543004 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 811 351 0 0 0 chr1 29652428 29652466 -167542966 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 811 264 30 0 0 chr1 29652466 29652498 -167542934 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 811 616 303 11 22 chr1 29652499 29652681 -167542751 - B3 SINE B2 -29 187 8 2 811 6086 124 22 16 chr1 29652788 29653536 -167541896 + Lx3A LINE L1 5977 6737 -244 2 811 4172 15 4 2 chr1 29653536 29654017 -167541415 + LTRIS_Mm LTR ERV1 1 482 0 2 811 6086 124 22 16 chr1 29654017 29654251 -167541181 + Lx3A LINE L1 6738 6965 -16 2 811 338 0 24 0 chr1 29654252 29654294 -167541138 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2 811 324 319 40 79 chr1 29655055 29655072 -167540360 + B3 SINE B2 9 25 -191 2 811 2470 50 84 3 chr1 29655072 29655392 -167540040 + ORR1A1 LTR MaLR 1 346 0 2 811 13287 72 6 3 chr1 29655392 29657180 -167538252 + ORR1A1-int LTR MaLR 1 1792 0 2 811 2725 56 6 3 chr1 29657180 29657523 -167537909 + ORR1A1 LTR MaLR 1 344 -2 2 811 324 319 40 79 chr1 29657523 29657629 -167537803 + B3 SINE B2 26 127 -89 2 811 2481 153 161 9 chr1 29657608 29657821 -167537611 - RMER17D2 LTR ERVK -194 615 381 2 811 984 55 0 0 chr1 29657821 29657948 -167537484 + (GGAGA)n Simple_repeat Simple_repeat 2 128 0 2 811 2481 153 161 9 chr1 29657948 29658268 -167537164 - RMER17D2 LTR ERVK -429 380 2 2 811 509 68 14 0 chr1 29658545 29658619 -167536813 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 811 22 35 0 0 chr1 29658779 29658808 -167536624 + AT_rich Low_complexity Low_complexity 1 29 0 2 811 22 35 0 0 chr1 29658887 29658916 -167536516 + AT_rich Low_complexity Low_complexity 1 29 0 2 811 387 0 0 0 chr1 29659810 29659853 -167535579 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 811 561 42 0 0 chr1 29659861 29659933 -167535499 + (CAATA)n Simple_repeat Simple_repeat 4 75 0 2 811 389 196 0 43 chr1 29660149 29660266 -167535166 - L1_Mur1 LINE L1 -2718 3168 3057 2 811 4658 157 69 11 chr1 29660266 29661126 -167534306 + RMER17B LTR ERVK 44 958 0 2 811 3565 49 9 0 chr1 29661386 29661818 -167533614 + RLTR10C LTR ERVK 1 436 0 2 811 2615 92 53 3 chr1 29661818 29662198 -167533234 + MMERVK10C-int LTR ERVK 1 399 -7182 2 811 8847 49 0 3 chr1 29662196 29663278 -167532154 + MMERVK10C-int LTR ERVK 870 1948 -5633 2 811 8124 16 0 0 chr1 29663278 29664207 -167531225 + L1Md_T LINE L1 4658 5586 -297 2 811 8953 6 0 0 chr1 29664207 29665203 -167530229 + L1Md_T LINE L1 5587 6582 0 2 811 24617 45 0 0 chr1 29665214 29669091 -167526341 + MMERVK10C-int LTR ERVK 1935 5810 -1771 2 811 7567 43 0 1 chr1 29669077 29670014 -167525418 + MMERVK10C-int LTR ERVK 6646 7581 0 2 811 3548 49 9 2 chr1 29670014 29670447 -167524985 + RLTR10C LTR ERVK 1 436 0 2 811 3209 14 0 0 chr1 29671742 29672106 -167523326 - L1Md_A LINE L1 0 6582 6219 2 811 1307 90 29 24 chr1 29672227 29672432 -167523000 - BGLII_Mus LTR ERVK -2 420 215 2 811 766 157 376 0 chr1 29672433 29672619 -167522813 - L1_Mur1 LINE L1 -335 5551 5296 2 811 1595 278 80 21 chr1 29672618 29673225 -167522207 - Lx7 LINE L1 -1007 6453 5783 2 811 423 0 0 0 chr1 29673225 29673272 -167522160 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 811 1595 233 51 30 chr1 29673272 29673681 -167521751 - Lx7 LINE L1 -96 5784 5362 2 811 1756 198 48 29 chr1 29673681 29674056 -167521376 - RLTR41 LTR ERV1 0 446 65 2 811 1371 215 23 62 chr1 29674086 29674522 -167520910 - Lx7 LINE L1 -519 5361 4943 2 811 5747 80 50 24 chr1 29675416 29676259 -167519173 + RLTR13D5 LTR ERVK 1 865 -158 2 811 4092 67 3 3 chr1 29676259 29676832 -167518600 + L1Md_F2 LINE L1 5012 5584 -299 2 811 7170 91 3 15 chr1 29676835 29677829 -167517603 + L1Md_F2 LINE L1 5588 6569 -13 2 811 769 176 12 75 chr1 29677829 29677989 -167517443 + RLTR13D5 LTR ERVK 834 983 0 2 811 2771 114 5 0 chr1 29677989 29678385 -167517047 - MTB LTR MaLR 0 400 3 2 811 189 245 41 0 chr1 29678473 29678522 -167516910 - L3 LINE CR1 -113 4376 4326 2 811 693 333 93 52 chr1 29678538 29678902 -167516530 - MTE2b LTR MaLR 0 379 1 2 811 1092 359 87 116 chr1 29678902 29680521 -167514911 - MTE2b-int LTR MaLR -6 1574 3 2 811 890 317 50 58 chr1 29680522 29680904 -167514528 - MTE2b LTR MaLR 0 379 1 2 811 566 113 10 0 chr1 29681363 29681460 -167513972 + (TTTTC)n Simple_repeat Simple_repeat 3 100 0 2 811 21 0 0 0 chr1 29682321 29682342 -167513090 + AT_rich Low_complexity Low_complexity 1 21 0 2 811 1436 262 38 11 chr1 29683111 29683481 -167511951 - RLTR14 LTR ERV1 0 382 3 2 811 1280 157 0 21 chr1 29683958 29684192 -167511240 - Lx3A LINE L1 -599 6382 6154 2 811 3406 149 15 31 chr1 29684192 29684803 -167510629 + Lx3A LINE L1 6381 6981 0 2 811 1190 262 0 86 chr1 29684854 29685192 -167510240 - Lx6 LINE L1 -16 7444 7136 2 811 29224 93 16 6 chr1 29685194 29690174 -167505258 + L1Md_F2 LINE L1 554 5585 -298 2 811 8008 52 1 5 chr1 29690175 29691175 -167504257 + L1Md_F2 LINE L1 5587 6582 0 2 811 2048 229 144 70 chr1 29691185 29691343 -167504089 + L1_Mur3 LINE L1 4427 4622 -1258 2 811 180 0 0 0 chr1 29691343 29691363 -167504069 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 811 2048 229 144 70 chr1 29691363 29692249 -167503183 + L1_Mur3 LINE L1 4623 5549 -331 2 811 1078 194 22 9 chr1 29692252 29692454 -167502978 - RMER19A LTR ERVK 0 737 533 2 811 2240 254 45 111 chr1 29692454 29693555 -167501877 + RMER17B LTR ERVK 1 926 -32 2 811 2686 211 45 26 chr1 29693502 29693826 -167501606 - RMER19A LTR ERVK -153 584 266 2 811 189 0 0 0 chr1 29693826 29693847 -167501585 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 811 2686 211 45 26 chr1 29693847 29694095 -167501337 - RMER19A LTR ERVK -472 265 2 2 811 518 253 120 6 chr1 29694247 29694414 -167501018 + Lx6 LINE L1 6416 6601 -859 2 811 434 192 105 37 chr1 29694751 29694885 -167500547 + Lx7 LINE L1 7505 7650 -46 2 811 3568 182 26 25 chr1 29694885 29694922 -167500510 - RLTR17 LTR ERVK 0 692 669 2 811 194 0 39 0 chr1 29694922 29694948 -167500484 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 811 3568 182 26 25 chr1 29694948 29695601 -167499831 - RLTR17 LTR ERVK -24 668 1 2 811 434 192 105 37 chr1 29695601 29695628 -167499804 + Lx7 LINE L1 7651 7677 -19 2 811 683 196 6 0 chr1 29695634 29695792 -167499640 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 811 397 264 176 22 chr1 29695799 29695981 -167499451 + B3 SINE B2 2 211 -5 2 811 1588 187 170 16 chr1 29696040 29696405 -167499027 + MTC LTR MaLR 1 421 0 2 811 6210 140 19 24 chr1 29698506 29700109 -167495323 - Lx LINE L1 -8 6646 5042 2 811 4430 12 2 0 chr1 29700110 29700602 -167494830 - MT2_Mm LTR ERVL 0 493 1 2 811 302 0 0 0 chr1 29700602 29700640 -167494792 - MERVL-int LTR ERVL 0 5485 5448 2 811 390 167 46 35 chr1 29700640 29700727 -167494705 - ORR1A3-int LTR MaLR -1323 640 553 2 811 45185 16 6 0 chr1 29700727 29706053 -167489379 - MERVL-int LTR ERVL -125 5360 1 2 811 4430 12 2 0 chr1 29706053 29706545 -167488887 - MT2_Mm LTR ERVL 0 493 1 2 811 7095 174 126 37 chr1 29706547 29708317 -167487115 - L1_Mur2 LINE L1 -840 5037 3111 2 811 3778 49 32 4 chr1 29708317 29708786 -167486646 - LTRIS_Mm LTR ERV1 0 482 1 2 811 10280 80 0 15 chr1 29708786 29710226 -167485206 - MuRRS-int LTR ERV1 0 4690 3273 2 811 9346 68 8 9 chr1 29710258 29711532 -167483900 - MuRRS-int LTR ERV1 -1413 3277 2006 2 811 2682 40 3 30 chr1 29711532 29711868 -167483564 + IAPLTR2b LTR ERVK 1 327 0 2 811 16000 61 69 78 chr1 29711869 29714449 -167480983 + IAPEz-int LTR ERVK 9 2564 -3917 2 811 8012 65 8 5 chr1 29714439 29715529 -167479903 + IAPEz-int LTR ERVK 5386 6479 -2 2 811 2703 37 3 30 chr1 29715531 29715867 -167479565 + IAPLTR2b LTR ERVK 1 327 0 2 811 273 0 0 0 chr1 29715874 29715915 -167479517 + L1Md_A LINE L1 6542 6582 0 2 811 2247 88 3 9 chr1 29715915 29716259 -167479173 - MuRRS-int LTR ERV1 -2699 1991 1650 2 811 1006 53 8 0 chr1 29716273 29716405 -167479027 + MuRRS-int LTR ERV1 2597 2729 -1961 2 811 3546 129 26 25 chr1 29716405 29717058 -167478374 - MusHAL1 LINE L1 -808 1904 1251 2 811 195 42 0 0 chr1 29717059 29717083 -167478349 + (T)n Simple_repeat Simple_repeat 1 24 0 2 811 7726 49 1 2 chr1 29717087 29718206 -167477226 - L1Md_F2 LINE L1 0 6582 5465 2 811 227 86 57 0 chr1 29718203 29718238 -167477194 - MusHAL1 LINE L1 -1456 1256 1220 2 811 230 333 12 12 chr1 29718721 29718806 -167476626 - B4A SINE B4 -197 95 11 2 811 256 186 0 0 chr1 29718916 29718959 -167476473 + RSINE1 SINE B4 87 129 -36 2 811 1325 230 188 39 chr1 29719095 29719579 -167475853 + RMER2 LTR ERV1 1 556 -11 2 811 3606 64 4 0 chr1 29719861 29720343 -167475089 - L1_Mus1 LINE L1 -439 6128 5645 2 811 3420 91 2 7 chr1 29720343 29720806 -167474626 + L1_Mus1 LINE L1 6106 6566 -1 2 811 318 37 0 0 chr1 29720928 29720982 -167474450 + L1_Mus4 LINE L1 6583 6636 0 2 811 38 22 0 0 chr1 29721359 29721404 -167474028 + AT_rich Low_complexity Low_complexity 1 45 0 2 811 492 18 0 0 chr1 29723639 29723696 -167471736 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 811 452 196 64 21 chr1 29723710 29723804 -167471628 + Lx5 LINE L1 6146 6243 -807 2 811 4448 85 18 2 chr1 29724497 29725100 -167470332 - L1_Mus1 LINE L1 -1 6566 5954 2 811 1703 49 0 20 chr1 29725125 29725359 -167470073 + L1_Mus2 LINE L1 5694 5957 -609 2 811 1067 103 7 0 chr1 29725434 29725580 -167469852 + B1_Mus2 SINE Alu 1 147 0 2 811 219 109 21 21 chr1 29725580 29725627 -167469805 + A-rich Low_complexity Low_complexity 1 47 0 2 811 438 108 0 0 chr1 29725692 29725757 -167469675 + (A)n Simple_repeat Simple_repeat 1 65 0 2 811 323 377 25 19 chr1 29726094 29726256 -167469176 - ID_B1 SINE B4 -45 179 17 2 811 306 257 14 14 chr1 29726831 29726902 -167468530 + ID4_ SINE ID 11 81 -2 2 811 3669 117 47 0 chr1 29726937 29727495 -167467937 + MT2B2 LTR ERVL 1 584 0 2 811 22 0 0 0 chr1 29727669 29727691 -167467741 + AT_rich Low_complexity Low_complexity 1 22 0 2 811 728 312 60 17 chr1 29728647 29728977 -167466455 + Lx9 LINE L1 6404 6908 -736 2 811 572 327 130 20 chr1 29729309 29729870 -167465562 - L1MB1 LINE L1 -58 6131 5509 2 811 379 291 150 40 chr1 29729928 29730095 -167465337 + L1M2 LINE L1 4941 5116 -1027 2 811 189 74 0 0 chr1 29730095 29730122 -167465310 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 811 379 291 150 40 chr1 29730122 29730280 -167465152 + L1M2 LINE L1 5117 5302 -841 2 811 736 280 77 84 chr1 29730623 29730852 -167464580 - L1_Rod LINE L1 -2415 3432 3195 2 811 1066 57 6 12 chr1 29730852 29731012 -167464420 + (TTTC)n Simple_repeat Simple_repeat 4 162 0 2 811 736 280 77 84 chr1 29731012 29731487 -167463945 - L1_Rod LINE L1 -2653 3194 2733 2 811 712 230 76 96 chr1 29731497 29731562 -167463870 + ORR1C2 LTR MaLR 140 190 -194 2 811 441 0 0 0 chr1 29731562 29731611 -167463821 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 811 712 230 76 96 chr1 29731611 29731736 -167463696 + ORR1C2 LTR MaLR 191 322 -62 2 811 234 0 0 0 chr1 29731736 29731762 -167463670 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 811 712 230 76 96 chr1 29731762 29731820 -167463612 + ORR1C2 LTR MaLR 323 384 0 2 811 488 288 108 7 chr1 29731844 29732113 -167463319 + Lx9 LINE L1 7313 7608 -36 2 811 35 71 0 0 chr1 29732138 29732208 -167463224 + AT_rich Low_complexity Low_complexity 1 70 0 3 811 4742 145 35 47 chr1 29732333 29733250 -167462182 - RMER17A2 LTR ERVK 0 906 1 3 811 22 0 0 0 chr1 29733744 29733766 -167461666 + AT_rich Low_complexity Low_complexity 1 22 0 3 811 2809 124 58 32 chr1 29734305 29734803 -167460629 - Lx LINE L1 -3 6651 6141 3 811 2946 56 0 5 chr1 29734804 29735182 -167460250 - L1Md_F2 LINE L1 -12 6570 6195 3 811 1538 44 0 0 chr1 29735182 29735364 -167460068 + L1Md_F2 LINE L1 6031 6212 -370 3 811 676 133 0 0 chr1 29735361 29735459 -167459973 - Lx LINE L1 -505 6149 6052 3 811 393 306 15 19 chr1 29735459 29735589 -167459843 + B1F1 SINE Alu 13 138 -11 3 811 201 74 0 0 chr1 29735960 29735987 -167459445 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 3 811 3415 68 5 0 chr1 29736013 29736455 -167458977 - L1Md_F3 LINE L1 -14 6570 6127 3 811 22 0 0 0 chr1 29736586 29736608 -167458824 + AT_rich Low_complexity Low_complexity 1 22 0 3 811 375 41 0 0 chr1 29736924 29736973 -167458459 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 811 991 237 154 7 chr1 29737103 29737409 -167458023 - RMER17A2 LTR ERVK 0 958 608 3 811 5665 52 10 3 chr1 29737409 29738121 -167457311 + L1Md_F2 LINE L1 4870 5586 -297 3 811 7974 50 4 1 chr1 29738122 29739112 -167456320 + L1Md_F2 LINE L1 5588 6580 -2 3 811 2935 152 34 25 chr1 29739124 29739685 -167455747 - RMER17A2 LTR ERVK -340 566 1 3 811 24 32 0 0 chr1 29739916 29739947 -167455485 + AT_rich Low_complexity Low_complexity 1 31 0 3 811 1438 143 4 4 chr1 29741157 29741410 -167454022 - Lx2A1 LINE L1 -1 7007 6755 3 811 2660 185 14 8 chr1 29741411 29741482 -167453950 + Lx2A1 LINE L1 5377 5452 -434 3 811 294 50 0 0 chr1 29741482 29741522 -167453910 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 811 4098 136 29 15 chr1 29741522 29742334 -167453098 + Lx2A1 LINE L1 5453 6274 -734 3 811 466 334 85 35 chr1 29742613 29743094 -167452338 - Lx8 LINE L1 -191 7282 6778 3 811 22 35 0 0 chr1 29744190 29744219 -167451213 + AT_rich Low_complexity Low_complexity 1 29 0 3 811 447 19 0 0 chr1 29746272 29746324 -167449108 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 811 594 297 20 66 chr1 29746708 29746906 -167448526 - B3A SINE B2 0 195 7 3 811 291 175 0 101 chr1 29749693 29749782 -167445650 + A-rich Low_complexity Low_complexity 1 80 0 3 811 2900 67 38 5 chr1 29749890 29750283 -167445149 + L1Md_F2 LINE L1 6164 6569 -13 3 811 383 118 14 56 chr1 29750287 29750359 -167445073 + RMER5 LTR ERV1 438 506 -28 3 811 1056 16 0 0 chr1 29750359 29750481 -167444951 + (GAA)n Simple_repeat Simple_repeat 2 123 0 3 811 21 0 0 0 chr1 29750961 29750982 -167444450 + AT_rich Low_complexity Low_complexity 1 21 0 3 811 349 365 121 22 chr1 29751280 29751462 -167443970 + Tigger5 DNA MER2_type 40 239 -2167 3 811 5363 84 6 7 chr1 29752506 29753234 -167442198 + L1_Mus1 LINE L1 5841 6567 0 3 101 6133 99 62 14 chr1 29753238 29754212 -167441220 + Lx3_Mus LINE L1 5982 7001 -8 3 812 21 0 0 0 chr1 29754212 29754233 -167441199 + AT_rich Low_complexity Low_complexity 1 21 0 3 812 1810 183 23 25 chr1 29754377 29754731 -167440701 - Lx2 LINE L1 -5 6992 6640 3 812 269 263 67 50 chr1 29754733 29754853 -167440579 - RMER2 LTR ERV1 -11 556 435 3 812 3136 31 2 40 chr1 29754866 29755269 -167440163 + RLTR10 LTR ERVK 1 388 -2 3 812 8101 33 0 0 chr1 29755281 29756229 -167439203 + RLTR10-int LTR ERVK 41 988 -999 3 812 8851 13 0 1 chr1 29756308 29757304 -167438128 + RLTR10-int LTR ERVK 990 1984 -3 3 812 2986 29 2 114 chr1 29757306 29757743 -167437689 + RLTR10 LTR ERVK 1 388 -2 3 812 1196 207 187 54 chr1 29757759 29758112 -167437320 - RMER2 LTR ERV1 -167 400 1 3 812 601 305 23 36 chr1 29758188 29758494 -167436938 + Lx9 LINE L1 7316 7617 -27 3 812 21 0 0 0 chr1 29758518 29758539 -167436893 + AT_rich Low_complexity Low_complexity 1 21 0 3 812 549 88 0 0 chr1 29759658 29759738 -167435694 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 812 35408 35 0 0 chr1 29760270 29765697 -167429735 + L1Md_T LINE L1 66 5589 -297 3 812 9005 4 0 0 chr1 29765697 29766725 -167428707 + L1Md_T LINE L1 5590 6585 0 3 812 180 85 85 0 chr1 29766767 29766814 -167428618 + (TTAA)n Simple_repeat Simple_repeat 2 52 0 3 812 210 118 0 0 chr1 29766874 29766908 -167428524 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 3 812 1077 82 7 0 chr1 29766908 29767055 -167428377 - B1_Mus1 SINE Alu 0 148 1 3 812 627 302 64 34 chr1 29767374 29767638 -167427794 - RMER15 LTR ERVL -2 573 302 3 812 263 65 0 0 chr1 29767893 29767939 -167427493 - Lx LINE L1 -8 6646 6601 3 812 7757 45 0 2 chr1 29768091 29769022 -167426410 - RLTR13B3 LTR ERVK 0 929 1 3 812 2161 172 44 80 chr1 29769596 29770343 -167425089 - RMER6C LTR ERVK 0 756 57 3 812 279 0 0 0 chr1 29770355 29770386 -167425046 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 812 1068 103 0 20 chr1 29771072 29771221 -167424211 + B1_Mus1 SINE Alu 2 147 -1 3 812 215 93 23 0 chr1 29771224 29771267 -167424165 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 3 812 523 344 10 36 chr1 29771828 29771843 -167423589 - B3A SINE B2 -7 191 181 3 812 369 0 0 0 chr1 29771843 29771884 -167423548 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 812 523 344 10 36 chr1 29771884 29772061 -167423371 - B3A SINE B2 -18 180 4 3 812 301 299 68 8 chr1 29772279 29772397 -167423035 - RMER15 LTR ERVL -100 475 351 3 812 222 176 19 19 chr1 29772722 29772774 -167422658 + A-rich Low_complexity Low_complexity 3 54 0 3 812 23 0 0 0 chr1 29773433 29773456 -167421976 + AT_rich Low_complexity Low_complexity 1 23 0 3 812 29 60 0 0 chr1 29774225 29774275 -167421157 + AT_rich Low_complexity Low_complexity 1 50 0 3 812 425 226 201 99 chr1 29774658 29774992 -167420440 - RLTR9A LTR ERVK 0 368 1 3 812 282 170 89 0 chr1 29775145 29775257 -167420175 + (TA)n Simple_repeat Simple_repeat 2 123 0 3 812 327 247 0 0 chr1 29775334 29775411 -167420021 - LTR40a LTR ERVL -84 435 359 3 812 956 131 0 0 chr1 29775564 29775709 -167419723 + B1_Mus1 SINE Alu 4 148 0 3 812 258 132 0 0 chr1 29775710 29775763 -167419669 + (A)n Simple_repeat Simple_repeat 1 53 0 3 812 383 287 43 0 chr1 29776062 29776177 -167419255 - RSINE1 SINE B4 -43 122 3 3 812 225 330 44 0 chr1 29776636 29776727 -167418705 + Tigger5 DNA MER2_type 2292 2386 -20 3 812 592 56 0 0 chr1 29776728 29776799 -167418633 + L1Md_F2 LINE L1 5516 5586 -297 3 812 7890 61 0 8 chr1 29776799 29777802 -167417630 + L1Md_F2 LINE L1 5587 6581 -1 3 812 21 0 0 0 chr1 29778679 29778700 -167416732 + AT_rich Low_complexity Low_complexity 1 21 0 3 812 1452 225 17 59 chr1 29778770 29779191 -167416241 - L1_Mur3 LINE L1 -813 5067 4665 3 812 1121 201 25 8 chr1 29779195 29779436 -167415996 + Lx5 LINE L1 5728 5972 -1078 3 812 382 195 73 0 chr1 29779535 29779617 -167415815 + MTC LTR MaLR 282 369 -52 3 812 723 296 65 5 chr1 29779643 29779981 -167415451 + Lx5 LINE L1 6168 6756 -940 3 812 29 47 0 0 chr1 29780828 29780871 -167414561 + AT_rich Low_complexity Low_complexity 1 43 0 3 812 339 44 0 0 chr1 29781394 29781439 -167413993 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 812 3944 105 0 0 chr1 29781770 29782339 -167413093 - L1Md_F2 LINE L1 -479 5404 4836 3 812 1348 84 0 6 chr1 29782335 29782514 -167412918 + L1Md_F2 LINE L1 5406 5583 -300 3 812 7588 71 0 8 chr1 29782517 29783521 -167411911 + L1Md_F2 LINE L1 5587 6582 0 3 812 275 256 167 0 chr1 29783669 29783759 -167411673 + L1_Mur3 LINE L1 2482 2586 -3294 3 812 1818 199 53 25 chr1 29783767 29783818 -167411614 - L1_Mur3 LINE L1 -1632 4248 4194 3 812 402 69 0 0 chr1 29783818 29783876 -167411556 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 812 1818 199 53 25 chr1 29783876 29784299 -167411133 - L1_Mur3 LINE L1 -1687 4193 3762 3 812 621 49 0 0 chr1 29784299 29784380 -167411052 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 812 423 245 0 0 chr1 29786543 29786637 -167408795 + L1M2 LINE L1 5679 5772 -528 3 812 536 0 16 0 chr1 29786654 29786718 -167408714 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 812 402 85 0 0 chr1 29786838 29786897 -167408535 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 812 2010 327 53 84 chr1 29786929 29788065 -167407367 + Lx5 LINE L1 5948 7047 -3 3 812 31 58 0 0 chr1 29788072 29788124 -167407308 + AT_rich Low_complexity Low_complexity 1 52 0 3 812 597 309 101 31 chr1 29789548 29789835 -167405597 - MLT1A0 LTR MaLR -8 357 51 3 812 1679 63 9 0 chr1 29790116 29790338 -167405094 + L1Md_A LINE L1 6358 6581 -1 3 812 261 0 0 0 chr1 29790448 29790477 -167404955 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 812 547 300 96 81 chr1 29790916 29791233 -167404199 - MER67D LTR ERV1 -356 355 1 3 812 468 0 0 0 chr1 29791732 29791784 -167403648 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 812 1827 253 150 25 chr1 29791790 29791978 -167403454 - Lx7 LINE L1 0 7696 7420 3 812 225 0 0 0 chr1 29791978 29792003 -167403429 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 812 423 0 0 0 chr1 29792003 29792049 -167403383 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 812 1827 253 150 25 chr1 29792049 29792612 -167402820 - Lx7 LINE L1 -277 7419 6851 3 812 21 57 0 0 chr1 29793106 29793141 -167402291 + AT_rich Low_complexity Low_complexity 1 35 0 3 812 1721 318 72 21 chr1 29793142 29794039 -167401393 - Lx9 LINE L1 -158 7486 6544 3 812 246 62 0 0 chr1 29794046 29794078 -167401354 + (CGG)n Simple_repeat Simple_repeat 2 33 0 3 812 24475 9 0 0 chr1 29794418 29797217 -167398215 + L1Md_A LINE L1 2788 5586 -297 3 812 8754 16 0 0 chr1 29797217 29798213 -167397219 + L1Md_A LINE L1 5587 6582 0 3 812 1423 100 5 5 chr1 29798481 29798693 -167396739 - L1_Mus2 LINE L1 -1 6565 6354 3 812 276 57 0 0 chr1 29799819 29799854 -167395578 - U2 snRNA snRNA -153 35 1 3 812 369 0 0 0 chr1 29799908 29799949 -167395483 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 812 1311 173 56 0 chr1 29799949 29800198 -167395234 - L1_Mus4 LINE L1 -16 6620 6358 3 812 1566 175 96 18 chr1 29800402 29800734 -167394698 + Lx2 LINE L1 6638 6995 -2 3 812 252 0 0 0 chr1 29800880 29800908 -167394524 + (T)n Simple_repeat Simple_repeat 1 28 0 3 812 13748 37 1 5 chr1 29800952 29803311 -167392121 - L1Md_F2 LINE L1 -1 6581 4237 3 812 6985 107 12 17 chr1 29803366 29804602 -167390830 - L1_Mus4 LINE L1 -7 6629 5396 3 812 1390 199 220 11 chr1 29804743 29805179 -167390253 - RLTR11A2 LTR ERVK 0 527 1 3 812 678 232 99 28 chr1 29805409 29805662 -167389770 - RLTR15 LTR ERVK -88 271 1 3 812 549 260 0 0 chr1 29805662 29805785 -167389647 + B1_Mur2 SINE Alu 12 134 -15 3 812 1019 137 6 0 chr1 29806153 29806305 -167389127 - MTB_Mm LTR MaLR -238 169 17 3 812 480 18 0 0 chr1 29806305 29806362 -167389070 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 812 1019 137 6 0 chr1 29806362 29806377 -167389055 - MTB_Mm LTR MaLR -391 16 2 3 812 606 333 80 0 chr1 29807092 29807329 -167388103 - Lx8 LINE L1 -121 7352 7097 4 812 399 356 14 14 chr1 29807337 29807548 -167387884 + Lx7 LINE L1 6973 7183 -513 4 812 382 367 41 21 chr1 29807594 29807836 -167387596 + Lx8 LINE L1 6815 7061 -412 4 812 270 0 0 0 chr1 29808113 29808143 -167387289 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 812 40 59 0 0 chr1 29808217 29808285 -167387147 + AT_rich Low_complexity Low_complexity 1 68 0 4 812 3915 255 79 11 chr1 29809130 29809242 -167386190 - Lx9 LINE L1 -4 7640 7517 4 812 279 0 0 0 chr1 29809242 29809273 -167386159 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 812 3915 255 79 11 chr1 29809273 29810399 -167385033 - Lx9 LINE L1 -128 7516 6318 4 812 38 39 0 0 chr1 29810580 29810632 -167384800 + AT_rich Low_complexity Low_complexity 1 52 0 4 812 1348 257 60 43 chr1 29810644 29811447 -167383985 + Lx9 LINE L1 3583 4863 -984 4 812 1873 241 86 45 chr1 29811448 29812196 -167383236 - Lx9 LINE L1 -280 5567 4790 4 812 1085 264 5 3 chr1 29812195 29812546 -167382886 + Lx9 LINE L1 5591 5977 -1667 4 812 2180 232 37 6 chr1 29813182 29813690 -167381742 - RLTR28 LTR ERVL 0 524 1 4 812 1164 224 105 14 chr1 29813927 29814212 -167381220 - RMER15 LTR ERVL -12 563 253 4 812 722 240 52 24 chr1 29814220 29814433 -167380999 + Lx9 LINE L1 7247 7465 -179 4 812 312 120 0 0 chr1 29814436 29814486 -167380946 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 812 225 279 57 23 chr1 29814876 29814964 -167380468 - ORR1E LTR MaLR -10 349 259 4 812 286 30 0 0 chr1 29815104 29815137 -167380295 + Lx7 LINE L1 5592 5624 -2072 4 812 326 130 0 0 chr1 29815213 29815259 -167380173 + Lx7 LINE L1 6895 6940 -756 4 812 3994 11 2 0 chr1 29815255 29815713 -167379719 + L1Md_T LINE L1 5127 5585 -298 4 812 8435 32 1 0 chr1 29815714 29816709 -167378723 + L1Md_T LINE L1 5587 6582 0 4 812 1228 269 44 26 chr1 29816715 29817060 -167378372 + Lx7 LINE L1 6954 7294 -402 4 812 183 80 0 0 chr1 29817060 29817085 -167378347 + (CAG)n Simple_repeat Simple_repeat 1 25 0 4 812 1228 273 55 29 chr1 29817085 29817201 -167378231 + Lx7 LINE L1 7295 7417 -279 4 812 5411 75 1 0 chr1 29817204 29817920 -167377512 - L1Md_F2 LINE L1 0 6582 5866 4 812 232 242 62 31 chr1 29817953 29818017 -167377415 - ORR1E LTR MaLR -185 174 109 4 812 4066 239 81 80 chr1 29818031 29819840 -167375592 + RLTR22_Mur LTR ERVK 2 1662 -186 4 812 311 267 54 32 chr1 29819828 29819921 -167375511 - ORR1E LTR MaLR -264 95 1 4 812 219 69 0 0 chr1 29821126 29821155 -167374277 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 812 236 131 0 21 chr1 29821840 29821887 -167373545 + C-rich Low_complexity Low_complexity 1 46 0 4 812 230 206 127 0 chr1 29822050 29822113 -167373319 + MTEb LTR MaLR 289 359 -20 4 812 300 289 95 12 chr1 29822261 29822345 -167373087 - B1F SINE Alu -58 91 1 4 812 3374 88 43 4 chr1 29822679 29823169 -167372263 + L1_Mus3 LINE L1 6124 6632 -6 4 812 396 0 0 0 chr1 29823841 29823885 -167371547 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 812 233 293 30 68 chr1 29824102 29824234 -167371198 - Lx9 LINE L1 -1201 6443 6317 4 812 351 0 0 0 chr1 29824238 29824277 -167371155 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 812 4149 86 4 3 chr1 29824875 29825599 -167369833 - L1_Mus1 LINE L1 -426 6141 5417 4 812 3284 67 9 7 chr1 29825599 29826034 -167369398 + L1_Mus1 LINE L1 6132 6567 0 4 812 261 0 0 0 chr1 29827435 29827464 -167367968 + (A)n Simple_repeat Simple_repeat 1 29 0 4 812 1939 206 12 65 chr1 29827477 29827908 -167367524 - MTC LTR MaLR -13 408 1 4 812 462 293 32 37 chr1 29828491 29828707 -167366725 + L1M2 LINE L1 5579 5793 -507 4 812 332 25 0 0 chr1 29828797 29828837 -167366595 - L1_Mm LINE L1 -1060 4823 4784 4 812 684 0 0 0 chr1 29829092 29829168 -167366264 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 4 812 1986 319 80 46 chr1 29829235 29830460 -167364972 - Lx9 LINE L1 -54 7590 6175 4 812 210 91 0 0 chr1 29830460 29830493 -167364939 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 812 1077 314 68 43 chr1 29830493 29830910 -167364522 - Lx9 LINE L1 -1299 6174 5728 4 812 1705 72 0 29 chr1 29831178 29831420 -167364012 - L1_Mus1 LINE L1 -14 6553 6319 4 812 3486 141 28 12 chr1 29831689 29832269 -167363163 - Lx LINE L1 -4 6650 6062 4 812 1099 21 7 14 chr1 29832279 29832422 -167363010 + (TCTCCC)n Simple_repeat Simple_repeat 4 145 0 4 812 799 131 72 7 chr1 29832426 29832564 -167362868 - B1_Mus2 SINE Alu 0 147 1 4 812 180 0 0 0 chr1 29833782 29833802 -167361630 + (T)n Simple_repeat Simple_repeat 1 20 0 4 812 245 335 34 64 chr1 29833802 29834006 -167361426 - B3A SINE B2 0 198 1 4 812 25 31 0 0 chr1 29834485 29834517 -167360915 + AT_rich Low_complexity Low_complexity 1 32 0 4 812 3462 178 49 3 chr1 29837100 29837748 -167357684 + RLTR33 LTR ERVK 1 678 0 4 812 485 326 67 34 chr1 29837770 29838008 -167357424 - RMER15 LTR ERVL -14 561 316 4 812 1455 215 32 86 chr1 29838492 29838864 -167356568 + RLTR1B LTR ERV1 161 512 0 4 812 305 351 36 50 chr1 29839133 29839355 -167356077 + L1_Rod LINE L1 22 240 -6932 4 812 737 192 23 0 chr1 29839396 29839526 -167355906 - RMER6B LTR ERVK -2 459 327 4 812 270 261 41 61 chr1 29839529 29839676 -167355756 + Lx9 LINE L1 1584 1727 -4120 4 812 1655 157 3 0 chr1 29839671 29839971 -167355461 + L1_Mur2 LINE L1 4323 4623 -1254 4 812 378 236 27 0 chr1 29839982 29840092 -167355340 + L1_Mur3 LINE L1 3741 3853 -2027 4 812 1383 273 27 58 chr1 29840117 29840773 -167354659 + Lx9 LINE L1 4356 4991 -856 4 812 428 295 54 81 chr1 29840757 29841052 -167354380 + Lx9 LINE L1 5815 6101 -1543 4 812 436 312 11 59 chr1 29841133 29841320 -167354112 + Lx9 LINE L1 6367 6544 -1100 4 812 353 186 87 0 chr1 29841329 29841490 -167353942 + (TA)n Simple_repeat Simple_repeat 1 175 0 4 812 1149 211 86 18 chr1 29841533 29841813 -167353619 + Lx9 LINE L1 6759 7057 -587 4 812 689 224 96 12 chr1 29841820 29842060 -167353372 + Lx9 LINE L1 7378 7637 -7 4 812 696 269 104 54 chr1 29843590 29843830 -167351602 + RMER13A LTR ERVK 164 415 -445 4 812 5417 133 65 25 chr1 29843860 29844546 -167350886 - Lx3A LINE L1 -9 6972 6245 4 812 5921 55 52 5 chr1 29844546 29845318 -167350114 + RLTR13C2 LTR ERVK 1 808 0 4 812 5417 133 65 25 chr1 29845318 29845618 -167349814 - Lx3A LINE L1 -737 6244 5947 4 812 351 0 0 0 chr1 29846411 29846450 -167348982 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 812 300 303 9 66 chr1 29847122 29847228 -167348204 + RSINE1 SINE B4 12 111 -54 4 812 251 289 52 0 chr1 29847299 29847433 -167347999 + L1MA6 LINE L1 5336 5480 -811 4 812 420 313 10 0 chr1 29847436 29847535 -167347897 + B3A SINE B2 1 100 -98 4 812 344 298 21 64 chr1 29847785 29847925 -167347507 - Lx7 LINE L1 -658 7038 6905 4 812 2382 129 31 5 chr1 29847936 29848081 -167347351 - MTB LTR MaLR 0 400 245 4 812 2917 62 0 0 chr1 29848081 29848438 -167346994 - IAPEY2_LTR LTR ERVK 0 357 1 4 812 2382 129 31 5 chr1 29848438 29848682 -167346750 - MTB LTR MaLR -156 244 1 4 812 433 292 95 66 chr1 29848685 29848977 -167346455 - L1MC1 LINE L1 -318 6026 5744 4 812 228 35 0 0 chr1 29848977 29849006 -167346426 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 812 433 289 96 67 chr1 29849006 29849129 -167346303 - L1MC1 LINE L1 -590 5743 5599 4 812 22 56 0 0 chr1 29849240 29849276 -167346156 + AT_rich Low_complexity Low_complexity 1 36 0 4 812 355 212 45 45 chr1 29849352 29849441 -167345991 - RLTR20B3 LTR ERVK -488 89 1 4 812 873 331 30 41 chr1 29850149 29850382 -167345050 + L1MA6 LINE L1 5491 5707 -593 4 812 248 0 31 0 chr1 29850382 29850414 -167345018 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 812 873 331 30 41 chr1 29850414 29850788 -167344644 + L1MA6 LINE L1 5708 6090 -210 4 812 394 366 125 21 chr1 29851006 29851333 -167344099 + MLT1A0 LTR MaLR 5 365 0 4 812 457 310 96 25 chr1 29851527 29851891 -167343541 - Lx8 LINE L1 -47 7426 7037 4 812 29 28 0 0 chr1 29852548 29852584 -167342848 + AT_rich Low_complexity Low_complexity 1 36 0 4 812 180 77 0 0 chr1 29853173 29853199 -167342233 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 812 454 31 0 30 chr1 29853336 29853402 -167342030 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 812 13994 130 65 14 chr1 29853558 29856637 -167338795 + L1_Mur1 LINE L1 7 3479 -2407 4 812 721 309 0 6 chr1 29856879 29857058 -167338374 + B3A SINE B2 1 178 -20 4 812 207 100 0 0 chr1 29857070 29857100 -167338332 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 812 384 281 487 0 chr1 29857165 29857352 -167338080 - B4A SINE B4 -14 278 2 4 812 353 81 16 0 chr1 29857511 29857573 -167337859 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 812 2870 94 0 14 chr1 29857574 29857993 -167337439 + Lx3_Mus LINE L1 3470 3882 -2004 4 812 8529 110 28 19 chr1 29857993 29859801 -167335631 + Lx3_Mus LINE L1 5084 6880 -129 4 812 29 0 0 0 chr1 29859801 29859830 -167335602 + AT_rich Low_complexity Low_complexity 1 29 0 4 812 3345 91 4 13 chr1 29859833 29860302 -167335130 - L1_Mus2 LINE L1 -1 6565 6101 4 812 404 240 179 7 chr1 29860699 29860804 -167334628 + Lx9 LINE L1 7312 7416 -228 4 812 957 88 0 0 chr1 29860804 29860941 -167334491 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 812 404 240 179 7 chr1 29860941 29860986 -167334446 + Lx9 LINE L1 7417 7488 -156 4 812 4172 136 28 34 chr1 29860991 29861309 -167334123 + RMER17A LTR ERVK 1 314 -437 4 812 1012 62 7 7 chr1 29861309 29861455 -167333977 + (TCTCC)n Simple_repeat Simple_repeat 1 146 0 4 812 4172 136 28 34 chr1 29861455 29861892 -167333540 + RMER17A LTR ERVK 315 751 0 4 812 3664 150 66 1 chr1 29861893 29862561 -167332871 - Lx2A1 LINE L1 -86 5791 5081 4 812 5355 167 68 94 chr1 29862561 29862905 -167332527 + Lx2A1 LINE L1 5801 6147 -861 4 812 1569 99 0 0 chr1 29862905 29863128 -167332304 + L1_Mus1 LINE L1 6345 6567 0 4 812 5355 167 68 94 chr1 29863128 29863333 -167332099 + Lx2A1 LINE L1 6148 6343 -665 4 812 387 0 0 0 chr1 29863333 29863376 -167332056 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 812 780 60 0 0 chr1 29863376 29863476 -167331956 - B1_Mus1 SINE Alu -10 138 39 4 812 5355 167 68 94 chr1 29863476 29864055 -167331377 + Lx2A1 LINE L1 6344 6997 -11 4 812 487 210 20 34 chr1 29864066 29864214 -167331218 + Lx9 LINE L1 7493 7638 -6 4 812 1061 90 28 0 chr1 29864776 29864920 -167330512 + B1_Mus1 SINE Alu 1 148 0 4 812 25 31 0 0 chr1 29865286 29865318 -167330114 + AT_rich Low_complexity Low_complexity 1 32 0 4 812 258 156 0 0 chr1 29865833 29865878 -167329554 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 812 291 379 104 54 chr1 29866854 29867468 -167327964 - L2 LINE L2 -339 3080 2436 4 812 755 281 91 37 chr1 29867706 29868168 -167327264 + Lx9 LINE L1 5760 6246 -1398 4 812 213 291 0 0 chr1 29868183 29868286 -167327146 + GA-rich Low_complexity Low_complexity 3 105 0 4 812 391 258 0 0 chr1 29868302 29868395 -167327037 + Lx9 LINE L1 6306 6398 -1246 4 812 3411 241 83 32 chr1 29868397 29869477 -167325955 + Lx9 LINE L1 6510 7644 0 4 812 201 94 0 0 chr1 29872297 29872329 -167323103 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 812 1788 67 12 4 chr1 29872650 29872905 -167322527 - L1_Mus3 LINE L1 -7 6631 6375 4 812 603 333 58 8 chr1 29873209 29873451 -167321981 + Lx7 LINE L1 6956 7209 -487 4 812 237 33 0 0 chr1 29874353 29874383 -167321049 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 812 1113 280 134 11 chr1 29874404 29874755 -167320677 - MTD LTR MaLR -8 411 18 4 812 32 75 0 0 chr1 29875213 29875280 -167320152 + AT_rich Low_complexity Low_complexity 1 67 0 4 812 202 132 38 0 chr1 29875301 29875354 -167320078 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 4 812 220 211 19 0 chr1 29875398 29875450 -167319982 + GA-rich Low_complexity Low_complexity 2 54 0 5 812 313 265 0 12 chr1 29875581 29875597 -167319835 + B4 SINE B4 70 84 -208 5 812 548 158 32 8 chr1 29875597 29875707 -167319725 + B1_Mus1 SINE Alu 1 78 -70 5 812 237 308 128 0 chr1 29876026 29876143 -167319289 - L2 LINE L2 -681 2738 2607 5 812 29 60 0 0 chr1 29876148 29876198 -167319234 + AT_rich Low_complexity Low_complexity 1 50 0 5 812 437 226 34 17 chr1 29876590 29876707 -167318725 - PB1D9 SINE Alu 0 120 2 5 812 820 294 56 5 chr1 29876773 29876988 -167318444 - Lx5 LINE L1 -106 6944 6719 5 812 626 290 145 42 chr1 29877363 29877694 -167317738 - ORR1D2 LTR MaLR -2 368 4 5 812 473 225 13 92 chr1 29878255 29878407 -167317025 - Lx9 LINE L1 -520 7124 6985 5 812 25 51 0 0 chr1 29879206 29879245 -167316187 + AT_rich Low_complexity Low_complexity 1 39 0 5 812 1065 140 0 0 chr1 29879748 29879926 -167315506 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 5 812 252 86 0 0 chr1 29879926 29879961 -167315471 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 812 1122 231 87 21 chr1 29880006 29880294 -167315138 - Lx3C LINE L1 -2 6974 6668 5 812 206 234 0 0 chr1 29881807 29881854 -167313578 + (ATGGTG)n Simple_repeat Simple_repeat 5 51 0 5 812 329 314 93 22 chr1 29882621 29882846 -167312586 - L1MA9 LINE L1 -322 5990 5750 5 812 285 324 64 18 chr1 29882861 29883144 -167312288 + L1M2 LINE L1 4969 5264 -879 5 812 485 266 78 42 chr1 29883192 29883516 -167311916 + L1M2 LINE L1 5351 5687 -625 5 812 3497 165 18 21 chr1 29883510 29884185 -167311247 - L1_Mm LINE L1 -1900 3983 3311 5 101 7386 115 6 11 chr1 29884180 29885610 -167309822 + L1_Mus3 LINE L1 5202 6630 -8 5 813 309 333 20 10 chr1 29885845 29885945 -167309487 + PB1D10 SINE Alu 5 105 -12 5 813 300 330 88 9 chr1 29885945 29885958 -167309474 + ID_B1 SINE B4 86 207 -17 5 813 1257 280 74 5 chr1 29886048 29886428 -167309004 + MTD LTR MaLR 14 419 0 5 813 22 0 0 0 chr1 29887042 29887064 -167308368 + AT_rich Low_complexity Low_complexity 1 22 0 5 813 33 25 0 0 chr1 29887300 29887340 -167308092 + AT_rich Low_complexity Low_complexity 1 40 0 5 813 227 167 0 0 chr1 29887485 29887533 -167307899 - MT2B LTR ERVL -4 529 482 5 813 682 226 146 107 chr1 29887574 29888006 -167307426 - MT2B LTR ERVL -59 542 2 5 813 30 69 0 0 chr1 29888938 29888996 -167306436 + AT_rich Low_complexity Low_complexity 1 58 0 5 813 4861 119 29 5 chr1 29889068 29889822 -167305610 - L1_Mus3 LINE L1 -7 6631 5860 5 813 701 102 0 9 chr1 29889822 29889931 -167305501 + (TTC)n Simple_repeat Simple_repeat 1 108 0 5 813 3835 145 5 17 chr1 29889931 29890564 -167304868 - L1_Mm LINE L1 -16 5867 5243 5 813 35669 71 2 15 chr1 29890565 29896716 -167298716 - L1Md_F2 LINE L1 -12 6570 511 5 813 12728 146 21 15 chr1 29896715 29898097 -167297335 - L1_Mm LINE L1 -628 5255 3865 5 813 270 0 0 0 chr1 29898097 29898127 -167297305 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 813 12728 146 21 15 chr1 29898127 29898490 -167296942 - L1_Mm LINE L1 -2019 3864 3511 5 813 2748 22 3 0 chr1 29898490 29898811 -167296621 + RLTRETN_Mm LTR ERVK 1 322 0 5 813 12728 146 21 15 chr1 29898811 29899340 -167296092 - L1_Mm LINE L1 -2373 3510 2966 5 813 261 57 0 0 chr1 29899351 29899386 -167296046 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 813 7935 51 4 1 chr1 29899388 29900378 -167295054 - L1Md_F2 LINE L1 -2 6580 5588 5 813 5848 128 15 8 chr1 29900378 29901354 -167294078 - MusHAL1 LINE L1 -943 1769 787 5 813 30 27 0 0 chr1 29901485 29901522 -167293910 + AT_rich Low_complexity Low_complexity 1 37 0 5 813 23 33 0 0 chr1 29901560 29901590 -167293842 + AT_rich Low_complexity Low_complexity 1 30 0 5 813 368 97 16 0 chr1 29901819 29901881 -167293551 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 813 461 210 234 35 chr1 29901884 29902026 -167293406 + Lx9 LINE L1 7332 7477 -167 5 813 333 0 0 0 chr1 29902026 29902063 -167293369 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 813 461 210 234 35 chr1 29902063 29902181 -167293251 + Lx9 LINE L1 7478 7643 -1 5 813 252 0 0 0 chr1 29902571 29902599 -167292833 + (T)n Simple_repeat Simple_repeat 1 28 0 5 813 711 299 14 14 chr1 29902876 29903090 -167292342 + Lx9 LINE L1 7116 7329 -315 5 813 764 294 61 31 chr1 29903098 29903326 -167292106 + MTD LTR MaLR 139 373 -46 5 813 674 317 11 5 chr1 29903553 29903740 -167291692 + B3 SINE B2 5 192 -24 5 813 1190 166 18 5 chr1 29903742 29903960 -167291472 + Lx2 LINE L1 6777 6997 0 5 813 23 0 0 0 chr1 29904247 29904270 -167291162 + AT_rich Low_complexity Low_complexity 1 23 0 5 813 432 0 0 0 chr1 29905055 29905103 -167290329 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 813 23 54 0 0 chr1 29908875 29908912 -167286520 + AT_rich Low_complexity Low_complexity 1 37 0 5 813 3309 41 5 0 chr1 29908959 29909353 -167286079 - MTA_Mm LTR MaLR 0 396 1 5 813 21 57 0 0 chr1 29909354 29909389 -167286043 + AT_rich Low_complexity Low_complexity 1 35 0 5 813 214 236 0 27 chr1 29909397 29909443 -167285989 + T-rich Low_complexity Low_complexity 29 73 0 5 813 259 65 21 21 chr1 29909443 29909490 -167285942 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 813 214 236 0 27 chr1 29909490 29909517 -167285915 + T-rich Low_complexity Low_complexity 2 28 0 5 813 21 36 0 0 chr1 29909803 29909831 -167285601 + AT_rich Low_complexity Low_complexity 1 28 0 5 813 695 224 0 6 chr1 29911112 29911292 -167284140 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 813 193 308 56 37 chr1 29911944 29912052 -167283380 - MIRc SINE MIR -25 243 134 5 813 6339 106 14 17 chr1 29912331 29913295 -167282137 + Lx3_Mus LINE L1 6049 7009 0 5 813 468 0 0 0 chr1 29913370 29913422 -167282010 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 813 204 267 42 17 chr1 29913422 29913540 -167281892 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 813 351 276 60 20 chr1 29913568 29913668 -167281764 - B4A SINE B4 -85 207 104 5 813 4032 38 0 0 chr1 29914001 29914481 -167280951 - L1Md_F2 LINE L1 -408 6174 5695 5 813 2591 93 7 52 chr1 29914481 29914902 -167280530 + L1Md_F2 LINE L1 6180 6581 -1 5 813 1556 207 31 3 chr1 29915861 29916210 -167279222 - RLTR15 LTR ERVK 0 359 1 5 813 329 250 144 8 chr1 29916269 29916394 -167279038 - L1MB2 LINE L1 -1 6170 6029 5 813 519 17 0 0 chr1 29916607 29916667 -167278765 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 813 1404 118 9 0 chr1 29917426 29917443 -167277989 - Lx2 LINE L1 -5 6992 6976 5 813 351 0 0 0 chr1 29917443 29917482 -167277950 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 5 813 1404 118 9 0 chr1 29917482 29917685 -167277747 - Lx2 LINE L1 -22 6975 6771 5 813 6483 151 6 9 chr1 29917685 29918995 -167276437 - Lx2 LINE L1 -357 6640 5337 5 813 4007 169 7 26 chr1 29918994 29919176 -167276256 + Lx2 LINE L1 5927 6112 -885 5 813 6293 47 0 0 chr1 29919176 29919945 -167275487 + L1Md_T LINE L1 5814 6582 0 5 813 4007 169 7 26 chr1 29919945 29920454 -167274978 + Lx2 LINE L1 6113 6605 -392 5 813 4686 159 15 5 chr1 29920463 29921280 -167274152 + Lx2 LINE L1 6173 6997 0 5 813 1781 224 24 0 chr1 29921433 29921812 -167273620 + Lx2A1 LINE L1 6607 6994 -14 5 813 666 0 0 0 chr1 29921814 29921888 -167273544 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 813 460 381 23 70 chr1 29922116 29922418 -167273014 + B4A SINE B4 3 290 -2 5 813 1076 237 153 22 chr1 29922863 29923229 -167272203 + MTD LTR MaLR 1 414 -5 5 813 24 0 0 0 chr1 29923846 29923870 -167271562 + AT_rich Low_complexity Low_complexity 1 24 0 5 813 24 0 0 0 chr1 29925478 29925502 -167269930 + AT_rich Low_complexity Low_complexity 1 24 0 5 813 183 214 51 114 chr1 29926008 29926087 -167269345 - L3 LINE CR1 -3553 936 863 5 813 1683 115 32 0 chr1 29926393 29926671 -167268761 + Lx2 LINE L1 5948 6234 -763 5 813 3037 139 9 0 chr1 29926672 29927132 -167268300 + Lx2 LINE L1 6404 6867 -130 5 813 509 183 32 0 chr1 29927144 29927237 -167268195 - Lx2 LINE L1 -362 6635 6540 5 813 327 25 0 0 chr1 29927544 29927584 -167267848 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 813 2267 278 58 31 chr1 29927589 29928454 -167266978 - Lx9 LINE L1 -172 7472 6585 5 813 1447 44 6 0 chr1 29929237 29929420 -167266012 - L1Md_T LINE L1 -1 6581 6398 5 813 279 0 0 0 chr1 29929628 29929659 -167265773 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 813 189 0 0 0 chr1 29929665 29929686 -167265746 + (TGG)n Simple_repeat Simple_repeat 2 22 0 5 813 22 56 0 0 chr1 29930770 29930806 -167264626 + AT_rich Low_complexity Low_complexity 1 36 0 5 813 2344 142 68 0 chr1 29930807 29931207 -167264225 - Lx2B LINE L1 -9 6991 6565 5 813 524 311 36 65 chr1 29931303 29931439 -167263993 - B3A SINE B2 -2 214 77 5 813 3267 173 110 3 chr1 29931439 29932064 -167263368 - RLTR17 LTR ERVK 0 692 1 5 813 524 294 25 70 chr1 29932064 29932138 -167263294 - B3A SINE B2 -122 76 5 5 813 216 24 23 47 chr1 29932830 29932873 -167262559 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 813 1071 67 0 0 chr1 29932873 29933008 -167262424 - B1_Mus1 SINE Alu -12 136 2 5 813 260 309 56 57 chr1 29933357 29933656 -167261776 - L1_Mur3 LINE L1 -556 5735 5394 5 813 318 150 50 0 chr1 29933660 29933720 -167261712 - Lx9 LINE L1 -10 7634 7572 5 813 729 114 0 0 chr1 29933778 29933892 -167261540 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 813 309 296 37 0 chr1 29933911 29934127 -167261305 - L1_Mur3 LINE L1 -483 5397 5143 5 813 16685 93 29 38 chr1 29934174 29935401 -167260031 - L1VL4 LINE L1 -5 3554 2289 5 813 1254 95 0 0 chr1 29935401 29935580 -167259852 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 5 813 16685 101 25 29 chr1 29935580 29937737 -167257695 - L1VL4 LINE L1 -1271 2288 193 5 813 285 335 45 62 chr1 29937940 29938249 -167257183 - L1_Mur2 LINE L1 -2110 3767 3464 5 813 232 48 48 0 chr1 29938251 29938293 -167257139 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 813 1095 68 0 7 chr1 29938300 29938448 -167256984 - B1_Mm SINE Alu 0 147 1 5 813 213 94 0 0 chr1 29938848 29938880 -167256552 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 813 263 348 0 0 chr1 29938914 29938983 -167256449 - RSINE1 SINE B4 0 165 97 5 813 277 272 9 28 chr1 29939053 29939159 -167256273 + CT-rich Low_complexity Low_complexity 4 107 0 5 813 378 253 171 11 chr1 29939272 29939448 -167255984 - L1_Mur3 LINE L1 -1637 4243 4040 5 813 239 213 0 0 chr1 29939525 29939572 -167255860 - MTEb LTR MaLR -12 367 321 5 813 343 322 33 0 chr1 29939614 29939704 -167255728 - B3 SINE B2 -122 94 2 6 813 341 314 50 47 chr1 29939998 29940223 -167255209 - L1_Rod LINE L1 -3977 1870 1637 6 813 353 321 36 0 chr1 29941916 29942028 -167253404 - B3 SINE B2 -46 170 55 6 813 6500 72 11 6 chr1 29942028 29942889 -167252543 + L1_Mus2 LINE L1 5702 6566 0 6 813 311 210 48 0 chr1 29942892 29942954 -167252478 - B3 SINE B2 -149 67 3 6 813 22 0 0 0 chr1 29944122 29944144 -167251288 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 23 68 0 0 chr1 29944263 29944307 -167251125 + AT_rich Low_complexity Low_complexity 1 44 0 6 813 411 364 15 0 chr1 29944564 29944696 -167250736 - ID_B1 SINE B4 -10 214 81 6 813 740 140 0 62 chr1 29945064 29945078 -167250354 + L1_Mur3 LINE L1 5666 5678 -202 6 813 3717 98 9 11 chr1 29945078 29945624 -167249808 - L1_Mus3 LINE L1 -1 6637 6093 6 813 927 40 0 45 chr1 29945624 29945756 -167249676 + L1_Mus3 LINE L1 5683 5808 -830 6 813 29 0 0 0 chr1 29945776 29945805 -167249627 + AT_rich Low_complexity Low_complexity 1 29 0 6 813 37824 44 0 5 chr1 29945809 29952172 -167243260 - L1Md_T LINE L1 0 6585 160 6 813 2123 82 0 0 chr1 29952173 29952454 -167242978 + L1_Mus3 LINE L1 5792 6072 -566 6 813 23 0 0 0 chr1 29954062 29954085 -167241347 + AT_rich Low_complexity Low_complexity 1 23 0 6 813 1349 299 77 50 chr1 29955624 29956366 -167239066 + RLTR40 LTR ERVK 21 782 -35 6 813 4670 62 7 7 chr1 29956824 29957427 -167238005 + L1Md_F2 LINE L1 5979 6581 -1 6 813 975 248 96 56 chr1 29957474 29957829 -167237603 - RMER10B LTR ERVL -2 396 28 6 813 216 0 0 0 chr1 29958040 29958064 -167237368 + (A)n Simple_repeat Simple_repeat 1 24 0 6 813 227 212 0 12 chr1 29958228 29958309 -167237123 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 813 312 193 35 0 chr1 29958329 29958386 -167237046 + HAL1-3A_ME LINE L1 1976 2034 -824 6 813 26 30 0 0 chr1 29959011 29959044 -167236388 + AT_rich Low_complexity Low_complexity 1 33 0 6 813 1576 47 0 0 chr1 29959828 29960021 -167235411 + B2_Mm1a SINE B2 1 193 0 6 813 1120 88 0 0 chr1 29960223 29960370 -167235062 - B1_Mus2 SINE Alu 0 147 1 6 813 229 279 15 0 chr1 29961178 29961246 -167234186 - L1MA5 LINE L1 -26 6274 6206 6 813 283 306 38 53 chr1 29961723 29961854 -167233578 - RSINE1 SINE B4 -35 130 2 6 813 25 51 0 0 chr1 29961903 29961942 -167233490 + AT_rich Low_complexity Low_complexity 1 39 0 6 813 249 163 0 23 chr1 29961946 29961990 -167233442 + ORR1E LTR MaLR 5 47 -312 6 813 1045 268 119 62 chr1 29963622 29964124 -167231308 + RMER5 LTR ERV1 3 533 -1 6 813 448 348 6 6 chr1 29964660 29964882 -167230550 + CT-rich Low_complexity Low_complexity 1 222 0 6 813 268 345 8 0 chr1 29964935 29965054 -167230378 + CT-rich Low_complexity Low_complexity 1 120 0 6 813 2781 48 3 8 chr1 29965060 29965139 -167230293 - IAPEY2_LTR LTR ERVK 0 357 280 6 813 4643 45 9 9 chr1 29965139 29965720 -167229712 - L1Md_F2 LINE L1 -12 6570 5990 6 813 2781 48 3 8 chr1 29965720 29965999 -167229433 - IAPEY2_LTR LTR ERVK -78 279 1 6 813 1760 92 0 74 chr1 29966258 29966541 -167228891 + L1_Mus2 LINE L1 6304 6565 -1 6 813 322 275 54 18 chr1 29966581 29966692 -167228740 - RMER15 LTR ERVL -115 460 346 6 813 183 320 134 0 chr1 29967100 29967197 -167228235 - MIRb SINE MIR -58 210 101 6 813 543 13 26 13 chr1 29967480 29967557 -167227875 + (TTTTG)n Simple_repeat Simple_repeat 1 78 0 6 813 188 35 35 0 chr1 29968359 29968388 -167227044 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 813 23 0 0 0 chr1 29968640 29968663 -167226769 + AT_rich Low_complexity Low_complexity 1 23 0 6 813 531 308 45 30 chr1 29968850 29969118 -167226314 + B4A SINE B4 3 274 -18 6 813 891 142 0 0 chr1 29969168 29969316 -167226116 + (TCTCCC)n Simple_repeat Simple_repeat 4 151 0 6 813 189 132 0 0 chr1 29969318 29969356 -167226076 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 813 779 256 50 95 chr1 29970217 29970661 -167224771 + Lx7 LINE L1 7268 7691 -5 6 813 23 0 0 0 chr1 29970987 29971010 -167224422 + AT_rich Low_complexity Low_complexity 1 23 0 6 813 266 397 101 14 chr1 29971207 29971355 -167224077 + RSINE1 SINE B4 4 164 -1 6 813 227 133 22 0 chr1 29971371 29971416 -167224016 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 6 813 333 0 0 0 chr1 29971927 29971964 -167223468 + (A)n Simple_repeat Simple_repeat 1 37 0 6 813 566 277 124 18 chr1 29972261 29972478 -167222954 - Lx4A LINE L1 -167 5713 5474 6 813 311 233 19 0 chr1 29972487 29972590 -167222842 + (TA)n Simple_repeat Simple_repeat 1 105 0 6 813 239 203 15 15 chr1 29972648 29972713 -167222719 - Lx9 LINE L1 -49 7595 7531 6 813 504 0 0 0 chr1 29972713 29972769 -167222663 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 813 459 112 20 10 chr1 29972769 29972868 -167222564 + (GA)n Simple_repeat Simple_repeat 1 100 0 6 813 223 161 35 18 chr1 29972871 29972928 -167222504 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 6 813 1393 214 95 17 chr1 29972929 29973286 -167222146 - Lx9 LINE L1 -128 7516 7132 6 813 567 108 0 29 chr1 29973304 29973409 -167222023 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 6 813 3877 202 48 34 chr1 29973493 29974650 -167220782 - Lx4A LINE L1 -324 6734 6062 6 813 1162 105 14 108 chr1 29974679 29974892 -167220540 + Lx LINE L1 6243 6435 -219 6 813 2045 91 58 13 chr1 29974940 29975251 -167220181 - L1_Mus2 LINE L1 -1 6565 6241 6 813 1293 45 0 0 chr1 29975251 29975406 -167220026 + L1_Mus2 LINE L1 6077 6231 -335 6 813 4794 128 31 41 chr1 29975787 29975858 -167219574 + Lx LINE L1 5803 5871 -783 6 813 347 39 59 0 chr1 29975858 29975909 -167219523 + (ATATG)n Simple_repeat Simple_repeat 2 55 0 6 813 4794 128 31 41 chr1 29975909 29976697 -167218735 + Lx LINE L1 5872 6654 0 6 813 26 30 0 0 chr1 29977907 29977940 -167217492 + AT_rich Low_complexity Low_complexity 1 33 0 6 813 24 0 0 0 chr1 29978169 29978193 -167217239 + AT_rich Low_complexity Low_complexity 1 24 0 6 813 4606 129 45 40 chr1 29978264 29978753 -167216679 + L1Md_F LINE L1 424 947 -5669 6 813 3152 47 0 0 chr1 29978753 29979139 -167216293 - L1Md_A LINE L1 0 6582 6197 6 813 30988 91 11 12 chr1 29979139 29983879 -167211553 + L1Md_F LINE L1 948 5651 -232 6 813 5132 91 3 8 chr1 29983880 29984598 -167210834 + L1Md_F2 LINE L1 5857 6570 -12 6 813 257 188 53 18 chr1 29985669 29985783 -167209649 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 813 2037 131 176 30 chr1 29985810 29986213 -167209219 + Lx2 LINE L1 6536 6997 0 6 813 1049 23 8 0 chr1 29986287 29986415 -167209017 + (GAA)n Simple_repeat Simple_repeat 1 129 0 6 813 561 276 0 63 chr1 29986525 29986668 -167208764 + B3 SINE B2 1 134 -82 6 813 207 0 0 0 chr1 29986699 29986722 -167208710 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 813 278 184 0 13 chr1 29987473 29987550 -167207882 + GA-rich Low_complexity Low_complexity 2 77 0 6 813 211 123 17 34 chr1 29987863 29987922 -167207510 + T-rich Low_complexity Low_complexity 2 59 0 6 813 23 0 0 0 chr1 29988051 29988074 -167207358 + AT_rich Low_complexity Low_complexity 1 23 0 6 813 696 119 18 0 chr1 29990276 29990385 -167205047 + Lx4B LINE L1 6882 6992 -66 6 813 39 38 0 0 chr1 29990459 29990512 -167204920 + AT_rich Low_complexity Low_complexity 1 53 0 6 813 3553 44 5 0 chr1 29991506 29991939 -167203493 + L1Md_F2 LINE L1 5152 5586 -297 6 813 7982 40 6 2 chr1 29991940 29992929 -167202503 + L1Md_F2 LINE L1 5588 6580 -2 6 813 1611 261 96 92 chr1 29993434 29994122 -167201310 + RMER1C Other Other 652 1342 0 6 813 324 261 45 48 chr1 29994256 29994420 -167201012 + ORR1E LTR MaLR 201 377 -2 6 813 237 33 0 0 chr1 29994756 29994786 -167200646 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 813 315 340 29 21 chr1 29994787 29994922 -167200510 - B3A SINE B2 -14 202 64 6 813 750 269 27 49 chr1 29996331 29996554 -167198878 + MTC LTR MaLR 195 412 -9 6 813 2557 77 6 14 chr1 29996582 29996939 -167198493 - L1Md_F2 LINE L1 -3 6579 6226 6 813 17702 89 18 2 chr1 29996939 29999359 -167196073 - L1_Mm LINE L1 -1462 4421 1970 6 813 363 74 29 14 chr1 29999359 29999428 -167196004 + (TTG)n Simple_repeat Simple_repeat 3 72 0 6 813 17702 89 18 2 chr1 29999428 29999575 -167195857 - L1_Mm LINE L1 -3914 1969 1816 6 813 2905 21 3 0 chr1 29999584 29999920 -167195512 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 813 738 0 0 0 chr1 29999920 30000000 -167195432 - IAPEz-int LTR ERVK 0 6481 6402 6 813 28508 9 2 0 chr1 30000000 30003152 -167192280 - IAPEz-int LTR ERVK -80 6401 3244 1 813 21283 46 35 14 chr1 30003144 30005833 -167189599 - IAPEz-int LTR ERVK -3730 2751 8 1 813 2921 21 3 0 chr1 30005833 30006169 -167189263 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 813 2771 92 1 0 chr1 30006169 30006657 -167188775 - L1Md_F LINE L1 -4275 1608 1119 2 813 8083 52 5 3 chr1 30006665 30008002 -167187430 - L1Md_F3 LINE L1 -1 6583 5244 3 813 3743 75 0 4 chr1 30008002 30008497 -167186935 + L1_Mm LINE L1 4474 4966 -917 4 813 4885 115 40 4 chr1 30008500 30009234 -167186198 - L1Md_F LINE L1 -5476 1140 381 2 813 431 171 158 0 chr1 30009469 30009551 -167185881 + RMER6D LTR ERVK 1 95 -625 5 813 703 217 70 61 chr1 30009563 30009842 -167185590 + RMER6D LTR ERVK 523 720 0 6 813 32 0 0 0 chr1 30011132 30011164 -167184268 + AT_rich Low_complexity Low_complexity 1 32 0 7 813 772 317 105 36 chr1 30011756 30012119 -167183313 - MTD LTR MaLR -14 405 18 8 813 1926 129 9 65 chr1 30012195 30012534 -167182898 - ORR1A4 LTR MaLR -9 320 1 9 813 253 250 21 106 chr1 30013117 30013211 -167182221 + MT2B LTR ERVL 155 240 -361 1 813 404 267 0 0 chr1 30013127 30013217 -167182215 + ID_B1 SINE B4 80 169 -55 1 101 1307 265 117 104 chr1 30014836 30015623 -167179809 - RLTR40 LTR ERVK -15 802 6 1 814 411 38 0 0 chr1 30015723 30015776 -167179656 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 814 432 70 75 23 chr1 30015776 30015874 -167179558 - B1_Mm SINE Alu -38 111 3 1 814 263 196 107 0 chr1 30016019 30016075 -167179357 - Lx7 LINE L1 -1169 6527 6466 1 814 198 191 0 0 chr1 30016132 30016174 -167179258 + CT-rich Low_complexity Low_complexity 2 43 0 1 814 293 200 62 130 chr1 30016176 30016452 -167178980 - Lx9 LINE L1 0 7644 7388 1 814 1907 181 49 13 chr1 30016452 30016838 -167178594 - MTB_Mm LTR MaLR 0 407 8 1 814 4501 194 137 31 chr1 30016844 30016926 -167178506 - MTB_Mm-int LTR MaLR 0 1258 1138 1 814 341 43 0 21 chr1 30016926 30016974 -167178458 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 814 4501 194 137 31 chr1 30016974 30018027 -167177405 - MTB_Mm-int LTR MaLR -121 1137 2 1 814 1977 176 62 16 chr1 30018028 30018415 -167177017 - MTB_Mm LTR MaLR -2 405 1 1 814 1297 230 49 3 chr1 30018431 30018737 -167176695 - Lx9 LINE L1 -297 7347 7028 1 814 630 307 53 19 chr1 30018738 30019004 -167176428 + Lx7 LINE L1 6646 6920 -776 2 814 685 345 58 0 chr1 30019032 30019357 -167176075 - Lx8 LINE L1 -467 7006 6663 2 814 23 33 0 0 chr1 30019496 30019526 -167175906 + AT_rich Low_complexity Low_complexity 1 30 0 2 814 2313 81 6 6 chr1 30019680 30020004 -167175428 - L1_Mus2 LINE L1 0 6566 6243 2 814 4636 111 8 20 chr1 30022139 30022878 -167172554 + Lx3A LINE L1 6248 6977 -4 2 814 1279 153 0 9 chr1 30023071 30023198 -167172234 - RLTR15 LTR ERVK 0 359 235 2 814 1623 11 0 0 chr1 30023198 30023386 -167172046 - L1Md_A LINE L1 0 6582 6395 2 814 1279 153 0 9 chr1 30023386 30023476 -167171956 - RLTR15 LTR ERVK -125 234 145 2 814 3888 224 75 29 chr1 30023568 30024880 -167170552 + MYSERV-int LTR ERVK 5385 6548 -2 2 814 2093 200 12 14 chr1 30024888 30025304 -167170128 + RLTR11A2 LTR ERVK 6 420 -107 2 814 1410 54 5 0 chr1 30025304 30025490 -167169942 - L1Md_F2 LINE L1 0 6582 6396 2 814 3551 53 0 2 chr1 30025497 30025952 -167169480 + L1_Mm LINE L1 4105 4558 -1325 2 814 392 193 80 27 chr1 30025952 30026064 -167169368 + RLTR11A2 LTR ERVK 410 527 0 2 814 459 0 0 0 chr1 30026211 30026262 -167169170 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 814 3981 168 97 86 chr1 30026366 30027251 -167168181 + RMER19B LTR ERVK 1 895 -7 3 814 476 155 12 0 chr1 30027299 30027383 -167168049 - L1_Mur2 LINE L1 -2068 3812 3728 3 814 1225 86 0 17 chr1 30027395 30027573 -167167859 - B2_Mm2 SINE B2 -9 186 12 3 814 836 244 26 9 chr1 30027581 30027813 -167167619 - L1_Mur2 LINE L1 -2155 3722 3487 3 814 468 167 56 0 chr1 30027818 30027926 -167167506 - L1_Mur2 LINE L1 -2612 3268 3155 3 814 3119 202 18 14 chr1 30027930 30028637 -167166795 + Lx6 LINE L1 4509 5218 -659 3 814 1739 243 11 77 chr1 30028636 30028819 -167166613 + Lx6 LINE L1 5559 5733 -1727 3 814 339 130 0 0 chr1 30028819 30028873 -167166559 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 814 1739 307 66 71 chr1 30028873 30030151 -167165281 + Lx6 LINE L1 5734 7675 -21 3 814 227 31 31 0 chr1 30030152 30030184 -167165248 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 814 21 36 0 0 chr1 30031242 30031270 -167164162 + AT_rich Low_complexity Low_complexity 1 28 0 3 814 384 22 0 0 chr1 30031609 30031654 -167163778 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 814 3106 256 104 30 chr1 30031654 30032792 -167162640 - Lx9 LINE L1 -12 7632 6411 3 814 929 290 58 42 chr1 30033134 30034102 -167161330 - L1M2 LINE L1 -817 5495 4500 4 814 28 61 0 0 chr1 30034476 30034525 -167160907 + AT_rich Low_complexity Low_complexity 1 49 0 4 814 26 0 0 0 chr1 30034973 30034999 -167160433 + AT_rich Low_complexity Low_complexity 1 26 0 4 814 196 54 26 51 chr1 30035152 30035170 -167160262 + (CAA)n Simple_repeat Simple_repeat 2 19 0 4 814 6727 38 8 8 chr1 30035170 30035989 -167159443 + RLTR13B2 LTR ERVK 1 819 -3 4 814 196 54 26 51 chr1 30035989 30036009 -167159423 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 814 255 276 0 33 chr1 30036468 30036558 -167158874 + GA-rich Low_complexity Low_complexity 1 87 0 4 814 4056 74 4 0 chr1 30036758 30037288 -167158144 + L1Md_F2 LINE L1 5055 5586 -297 4 814 7426 67 9 9 chr1 30037288 30038272 -167157160 + L1Md_F2 LINE L1 5587 6570 -12 4 814 324 0 0 0 chr1 30038706 30038742 -167156690 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 814 210 220 0 63 chr1 30039342 30039405 -167156027 + B4A SINE B4 2 60 -232 4 814 288 0 0 0 chr1 30040259 30040291 -167155141 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 814 527 259 52 0 chr1 30040629 30040745 -167154687 + B1_Mus2 SINE Alu 3 124 -23 5 814 2031 253 59 55 chr1 30040745 30041351 -167154081 + Lx6 LINE L1 6832 7440 -20 5 814 22 70 0 0 chr1 30042002 30042045 -167153387 + AT_rich Low_complexity Low_complexity 1 43 0 5 814 1730 156 83 0 chr1 30042284 30042586 -167152846 - IAPEY3_LTR LTR ERVK -5 327 1 5 814 581 298 0 100 chr1 30043344 30043534 -167151898 - B4 SINE B4 -12 280 110 5 814 24 0 0 0 chr1 30043720 30043744 -167151688 + AT_rich Low_complexity Low_complexity 1 24 0 5 814 1505 217 37 37 chr1 30044326 30044700 -167150732 - ORR1D1 LTR MaLR 0 374 1 5 814 617 203 44 15 chr1 30044759 30044894 -167150538 + RMER6B LTR ERVK 1 139 -322 5 814 491 311 33 33 chr1 30044945 30045128 -167150304 + Lx8 LINE L1 6955 7137 -336 5 814 586 293 26 7 chr1 30045139 30045290 -167150142 + B3A SINE B2 7 160 -38 6 814 462 18 0 0 chr1 30045293 30045348 -167150084 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 814 768 98 0 83 chr1 30045370 30045503 -167149929 - RMER17D2 LTR ERVK -687 122 1 6 814 1922 70 0 0 chr1 30045503 30045747 -167149685 + ORR1A1 LTR MaLR 95 338 -8 6 814 12511 81 12 11 chr1 30045752 30047542 -167147890 + ORR1A1-int LTR MaLR 2 1792 0 6 814 2733 67 0 0 chr1 30047542 30047888 -167147544 + ORR1A1 LTR MaLR 1 346 0 6 814 21 0 0 0 chr1 30048445 30048466 -167146966 + AT_rich Low_complexity Low_complexity 1 21 0 6 814 8193 51 5 0 chr1 30048738 30050232 -167145200 - L1Md_F3 LINE L1 -12 6572 5073 6 814 6548 54 2 2 chr1 30050232 30051052 -167144380 - L1Md_F2 LINE L1 -7 6575 5756 6 814 28 29 0 0 chr1 30051558 30051593 -167143839 + AT_rich Low_complexity Low_complexity 1 35 0 6 814 4493 69 2 3 chr1 30051638 30052221 -167143211 - L1Md_F2 LINE L1 -2 6580 5999 6 814 7171 80 4 10 chr1 30052221 30053838 -167141594 - L1Md_Gf LINE L1 -4062 1824 121 6 814 248 0 0 30 chr1 30054172 30054205 -167141227 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 7 814 967 88 73 0 chr1 30054208 30054344 -167141088 + B1_Mm SINE Alu 2 147 0 7 814 392 167 0 40 chr1 30054352 30054427 -167141005 - B1_Mur4 SINE Alu -73 77 6 7 814 428 320 0 0 chr1 30055378 30055525 -167139907 + (TATG)n Simple_repeat Simple_repeat 2 148 0 7 814 714 226 69 30 chr1 30055527 30055760 -167139672 + Lx7 LINE L1 7450 7691 -5 7 814 21 57 0 0 chr1 30056792 30056827 -167138605 + AT_rich Low_complexity Low_complexity 1 35 0 7 814 519 178 7 65 chr1 30056994 30057132 -167138300 - Lx9 LINE L1 -126 7518 7389 7 814 1072 236 41 37 chr1 30057134 30057163 -167138269 + MTC LTR MaLR 152 180 -241 7 814 3605 136 73 17 chr1 30057163 30057517 -167137915 + RMER17A LTR ERVK 1 377 -374 7 814 968 71 42 0 chr1 30057517 30057685 -167137747 + (TC)n Simple_repeat Simple_repeat 2 176 0 7 814 3605 136 73 17 chr1 30057685 30058041 -167137391 + RMER17A LTR ERVK 378 751 0 7 814 1072 236 41 37 chr1 30058041 30058280 -167137152 + MTC LTR MaLR 181 421 0 7 814 563 207 0 26 chr1 30058282 30058396 -167137036 - Lx9 LINE L1 -756 6888 6778 7 814 37 0 0 0 chr1 30059496 30059533 -167135899 + AT_rich Low_complexity Low_complexity 1 37 0 8 814 314 336 34 92 chr1 30059539 30059801 -167135631 + MLT1B LTR MaLR 111 357 -33 8 814 292 118 29 0 chr1 30060494 30060562 -167134870 + (TA)n Simple_repeat Simple_repeat 2 71 0 8 814 33 43 0 0 chr1 30060690 30060737 -167134695 + AT_rich Low_complexity Low_complexity 1 47 0 8 814 1018 117 7 0 chr1 30060737 30060882 -167134550 - B1_Mm SINE Alu 0 147 2 8 814 4240 80 9 3 chr1 30061102 30061677 -167133755 + L1_Mus1 LINE L1 5989 6566 -1 8 814 360 0 0 0 chr1 30063190 30063230 -167132202 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 814 857 56 0 0 chr1 30063231 30063338 -167132094 - B1_Mus1 SINE Alu -6 142 36 8 814 855 284 84 3 chr1 30063492 30063778 -167131654 - ORR1D2-int LTR MaLR -1 1369 1061 8 814 2204 294 75 74 chr1 30064040 30065078 -167130354 - ORR1D2-int LTR MaLR -330 1040 2 8 814 1280 280 36 19 chr1 30065084 30065445 -167129987 - ORR1D2 LTR MaLR -3 367 1 8 814 204 300 0 0 chr1 30066831 30066881 -167128551 + CT-rich Low_complexity Low_complexity 3 52 0 8 814 180 111 0 0 chr1 30067540 30067567 -167127865 + (TCC)n Simple_repeat Simple_repeat 1 27 0 9 814 385 104 13 13 chr1 30067567 30067645 -167127787 + (CAT)n Simple_repeat Simple_repeat 3 80 0 9 814 3631 122 82 3 chr1 30067800 30068406 -167127026 - Lx LINE L1 0 6654 6001 9 814 453 153 52 104 chr1 30069088 30069194 -167126238 + RMER17C LTR ERVK 75 188 -222 9 814 1135 83 0 12 chr1 30069194 30069365 -167126067 + (TTCTC)n Simple_repeat Simple_repeat 5 173 0 9 814 453 153 52 104 chr1 30069365 30069470 -167125962 + RMER17C LTR ERVK 189 274 -136 9 814 732 23 0 0 chr1 30069548 30069634 -167125798 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 9 814 1750 207 101 16 chr1 30071212 30071600 -167123832 + MTC LTR MaLR 1 421 0 9 814 2505 76 9 0 chr1 30071678 30072006 -167123426 + L1_Mm LINE L1 5526 5856 -27 9 814 3270 65 16 5 chr1 30072008 30072438 -167122994 + L1_Mus1 LINE L1 6133 6567 0 9 814 3716 38 0 0 chr1 30073399 30073843 -167121589 - L1Md_T LINE L1 -235 6347 5904 9 814 811 31 23 38 chr1 30073843 30073976 -167121456 + L1Md_F3 LINE L1 6454 6584 0 1 814 28 0 0 0 chr1 30074006 30074034 -167121398 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 409 370 21 10 chr1 30075302 30075496 -167119936 + B3A SINE B2 1 196 -2 1 814 2979 84 39 11 chr1 30076078 30076511 -167118921 - L1_Mus3 LINE L1 0 6638 6194 1 814 22 0 0 0 chr1 30076662 30076684 -167118748 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 2956 309 97 36 chr1 30076913 30078683 -167116749 - Lx8 LINE L1 -9 7464 5587 1 814 328 129 23 23 chr1 30078704 30078791 -167116641 + T-rich Low_complexity Low_complexity 2 88 0 1 814 473 246 68 42 chr1 30078873 30079064 -167116368 + L1_Mur3 LINE L1 3874 4069 -1811 1 814 1902 89 27 41 chr1 30080162 30080455 -167114977 - Lx4A LINE L1 -324 6734 6446 1 814 1362 198 25 11 chr1 30080455 30080731 -167114701 + Lx4A LINE L1 6779 7058 0 1 814 1341 278 75 32 chr1 30082327 30082729 -167112703 + MTD LTR MaLR 1 419 0 1 814 207 0 0 0 chr1 30082846 30082869 -167112563 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 814 210 122 49 0 chr1 30083525 30083566 -167111866 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 1 814 182 147 29 0 chr1 30083799 30083833 -167111599 + MIR SINE MIR 122 156 -106 1 814 243 291 46 55 chr1 30083872 30083981 -167111451 - MLT1A0 LTR MaLR 0 365 258 1 814 8272 58 0 8 chr1 30083981 30085048 -167110384 + L1_Mm LINE L1 4371 5429 -454 1 814 704 47 0 0 chr1 30085044 30085129 -167110303 + L1Md_F2 LINE L1 6095 6179 -403 1 814 447 19 0 0 chr1 30085129 30085181 -167110251 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 814 246 22 42 42 chr1 30085183 30085231 -167110201 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 814 1052 51 0 14 chr1 30085232 30085372 -167110060 - B1_Mm SINE Alu 0 147 10 1 814 3061 56 2 5 chr1 30085373 30085766 -167109666 + L1Md_F2 LINE L1 6191 6582 0 1 814 5777 58 1 3 chr1 30085787 30086519 -167108913 + L1Md_F2 LINE L1 5840 6570 -12 1 814 22 70 0 0 chr1 30086953 30086996 -167108436 + AT_rich Low_complexity Low_complexity 1 43 0 1 814 446 297 46 0 chr1 30087257 30087452 -167107980 - L1M2 LINE L1 -3450 2693 2490 1 814 1289 311 59 26 chr1 30087914 30088537 -167106895 - Lx8 LINE L1 -1 7472 6829 1 814 2170 87 7 20 chr1 30088578 30088884 -167106548 + L1_Mus3 LINE L1 6321 6622 -16 1 814 648 263 8 8 chr1 30088917 30089051 -167106381 + B1_Mur4 SINE Alu 10 143 -7 1 814 242 224 0 39 chr1 30089066 30089117 -167106315 + G-rich Low_complexity Low_complexity 5 53 0 1 814 201 74 0 0 chr1 30089142 30089169 -167106263 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 814 535 256 155 0 chr1 30089296 30089425 -167106007 + B1_Mur1 SINE Alu 1 149 0 1 814 424 266 10 31 chr1 30089447 30089544 -167105888 + PB1D9 SINE Alu 5 99 -21 1 814 1349 328 63 14 chr1 30089550 30090107 -167105325 - Lx8 LINE L1 -677 6796 6213 1 814 459 0 0 0 chr1 30090122 30090173 -167105259 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 814 442 220 14 7 chr1 30090821 30090838 -167104594 + Lx9 LINE L1 7502 7518 -126 1 814 348 119 0 0 chr1 30090838 30090897 -167104535 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 814 442 220 14 7 chr1 30090897 30091021 -167104411 + Lx9 LINE L1 7519 7644 0 1 814 24 53 0 0 chr1 30092050 30092088 -167103344 + AT_rich Low_complexity Low_complexity 1 38 0 1 814 288 0 0 0 chr1 30092984 30093016 -167102416 + (T)n Simple_repeat Simple_repeat 1 32 0 1 814 41141 8 0 1 chr1 30093021 30100309 -167095123 - L1Md_A LINE L1 0 6582 1 1 814 285 313 146 12 chr1 30101166 30101570 -167093862 + L1M2 LINE L1 4840 5297 -846 1 814 23 0 0 0 chr1 30101603 30101626 -167093806 + AT_rich Low_complexity Low_complexity 1 23 0 1 814 688 247 6 0 chr1 30101854 30102016 -167093416 - Lx6 LINE L1 -4 7456 7294 1 814 10999 18 3 17 chr1 30102014 30104137 -167091295 - L1Md_A LINE L1 -3375 2508 421 1 814 6944 14 0 0 chr1 30104880 30105687 -167089745 + L1_Mm LINE L1 2443 3249 -2634 1 814 3801 253 90 16 chr1 30105690 30106910 -167088522 - Lx6 LINE L1 -317 7143 5834 1 814 22 0 0 0 chr1 30107995 30108017 -167087415 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 204 224 134 0 chr1 30108344 30108411 -167087021 - L2a LINE L2 -49 3377 3302 1 814 226 395 60 17 chr1 30108960 30109004 -167086428 + ID_B1 SINE B4 50 170 -54 1 814 236 286 14 28 chr1 30109004 30109076 -167086356 + PB1D10 SINE Alu 19 89 -28 1 814 351 0 0 0 chr1 30109083 30109122 -167086310 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 814 288 272 64 35 chr1 30109803 30109944 -167085488 - L1_Mur3 LINE L1 -417 5463 5319 1 814 561 335 8 30 chr1 30109960 30110197 -167085235 + Lx9 LINE L1 6641 6872 -772 1 814 445 297 27 49 chr1 30110203 30110426 -167085006 - L1_Mur3 LINE L1 -1163 4717 4500 1 814 212 159 0 43 chr1 30110475 30110521 -167084911 + T-rich Low_complexity Low_complexity 2 45 0 1 814 3408 207 35 27 chr1 30110607 30111378 -167084054 + RMER12 LTR ERVK 1 777 -545 1 814 291 71 0 0 chr1 30111383 30111425 -167084007 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 814 450 0 0 0 chr1 30111455 30111505 -167083927 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 814 390 57 0 0 chr1 30111505 30111557 -167083875 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 814 542 249 148 69 chr1 30111567 30111770 -167083662 + RMER12 LTR ERVK 973 1191 -131 1 814 423 266 215 30 chr1 30111975 30112280 -167083152 - RMER20B LTR ERVK -61 566 187 1 814 465 274 66 41 chr1 30112524 30112843 -167082589 - L1_Mur3 LINE L1 -1658 4222 3896 1 814 226 229 14 28 chr1 30112856 30112928 -167082504 + L1M2 LINE L1 5493 5563 -734 1 814 247 333 73 7 chr1 30112955 30113106 -167082326 + Lx8 LINE L1 6174 6334 -1139 1 814 26 0 0 0 chr1 30113106 30113132 -167082300 + AT_rich Low_complexity Low_complexity 1 26 0 1 814 543 323 79 3 chr1 30114212 30114504 -167080928 + Lx7 LINE L1 6122 6435 -1261 1 814 582 280 6 13 chr1 30114538 30114697 -167080735 - Lx7 LINE L1 -930 6766 6609 1 814 4030 59 8 2 chr1 30114707 30115219 -167080213 + L1Md_F2 LINE L1 6058 6572 -10 1 814 832 319 24 19 chr1 30115235 30115612 -167079820 + Lx7 LINE L1 6754 7142 -331 1 814 21 0 0 0 chr1 30116178 30116199 -167079233 + AT_rich Low_complexity Low_complexity 1 21 0 1 814 931 119 11 0 chr1 30116241 30116417 -167079015 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 814 1102 89 0 22 chr1 30116442 30116626 -167078806 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 814 23 33 0 0 chr1 30117146 30117176 -167078256 + AT_rich Low_complexity Low_complexity 1 30 0 1 814 258 32 0 0 chr1 30117512 30117543 -167077889 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 814 353 232 50 20 chr1 30118375 30118476 -167076956 - RMER1C Other Other -282 1060 957 1 814 599 39 0 13 chr1 30119588 30119667 -167075765 + (TTTA)n Simple_repeat Simple_repeat 4 81 0 1 814 278 212 11 23 chr1 30119667 30119754 -167075678 - Lx3A LINE L1 -14 6967 6882 1 814 2080 55 0 0 chr1 30120129 30120401 -167075031 + L1Md_F2 LINE L1 6272 6543 -39 1 814 816 57 0 0 chr1 30120401 30120507 -167074925 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 1 814 276 30 0 0 chr1 30121648 30121681 -167073751 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 814 502 321 67 28 chr1 30122260 30122545 -167072887 + Lx9 LINE L1 7049 7344 -300 1 814 22 0 0 0 chr1 30122823 30122845 -167072587 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 34814 56 1 24 chr1 30123587 30129271 -167066161 + L1Md_T LINE L1 99 5586 -297 1 814 8040 56 0 0 chr1 30129271 30130267 -167065165 + L1Md_T LINE L1 5587 6582 0 1 814 3459 128 5 0 chr1 30131259 30131814 -167063618 - L1_Mm LINE L1 -69 5814 5257 1 814 21 57 0 0 chr1 30131887 30131922 -167063510 + AT_rich Low_complexity Low_complexity 1 35 0 1 814 877 295 57 84 chr1 30133781 30134054 -167061378 - ORR1D2 LTR MaLR 0 370 87 1 814 1520 79 0 0 chr1 30134054 30134257 -167061175 - L1_Mus2 LINE L1 0 6566 6364 1 814 877 295 57 84 chr1 30134257 30134353 -167061079 - ORR1D2 LTR MaLR -284 86 11 1 814 260 294 54 18 chr1 30134645 30134811 -167060621 - L1MB7 LINE L1 -6 6172 6001 1 814 355 312 123 12 chr1 30135065 30135308 -167060124 - L1MB7 LINE L1 -251 5933 5664 1 814 2651 62 0 0 chr1 30135346 30135700 -167059732 - L1_Mm LINE L1 -949 4934 4581 1 814 4018 38 0 0 chr1 30135699 30136205 -167059227 + L1Md_F2 LINE L1 5081 5586 -297 1 814 7746 61 1 3 chr1 30136205 30137191 -167058241 + L1Md_F2 LINE L1 5587 6570 -12 1 814 524 95 12 0 chr1 30137327 30137411 -167058021 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 814 1620 197 149 61 chr1 30137441 30138003 -167057429 + RLTR31_Mm LTR ERVK 6 579 -5 1 814 351 0 0 0 chr1 30138003 30138042 -167057390 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 814 375 23 0 0 chr1 30138042 30138086 -167057346 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 814 21 36 0 0 chr1 30139016 30139044 -167056388 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 726 50 0 0 chr1 30139278 30139377 -167056055 + (CAAAC)n Simple_repeat Simple_repeat 2 100 0 1 814 216 0 0 0 chr1 30139649 30139673 -167055759 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 814 471 277 26 55 chr1 30140153 30140388 -167055044 - LTRIS5 LTR ERV1 -106 522 230 1 101 15536 286 44 44 chr1 30140510 30147963 -167047469 - MURVY-int LTR ERV1 0 7452 1 1 815 537 243 55 63 chr1 30147963 30148238 -167047194 - LTRIS5 LTR ERV1 -6 513 223 1 815 26 30 0 0 chr1 30148653 30148686 -167046746 + AT_rich Low_complexity Low_complexity 1 33 0 1 815 276 369 49 7 chr1 30148876 30149018 -167046414 - RSINE1 SINE B4 -6 159 12 1 815 26 0 0 0 chr1 30149279 30149305 -167046127 + AT_rich Low_complexity Low_complexity 1 26 0 1 815 22 0 0 0 chr1 30152285 30152307 -167043125 + AT_rich Low_complexity Low_complexity 1 22 0 1 815 410 340 66 33 chr1 30152433 30152646 -167042786 - MER58A DNA MER1_type -4 220 1 1 815 822 346 112 11 chr1 30152800 30153133 -167042299 - ORR1E LTR MaLR 0 370 1 1 815 9137 148 8 16 chr1 30154392 30156101 -167039331 - L1_Mus4 LINE L1 -937 4946 3252 1 815 6493 132 48 7 chr1 30156104 30157713 -167037719 + L1_Mus4 LINE L1 4945 6634 -2 1 815 186 71 0 0 chr1 30158515 30158543 -167036889 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1 815 387 73 0 0 chr1 30158700 30158755 -167036677 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 815 3511 20 2 0 chr1 30158935 30159330 -167036102 - MTA_Mm LTR MaLR 0 396 1 1 815 7034 93 5 1 chr1 30159373 30160617 -167034815 + L1_Mus1 LINE L1 5319 6567 0 1 815 23 0 0 0 chr1 30160830 30160853 -167034579 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 26 30 0 0 chr1 30162103 30162136 -167033296 + AT_rich Low_complexity Low_complexity 1 33 0 2 815 478 328 84 84 chr1 30162911 30163420 -167032012 + MLT1H-int LTR MaLR 114 622 -787 2 815 230 281 41 20 chr1 30164181 30164279 -167031153 + GA-rich Low_complexity Low_complexity 3 102 0 2 815 221 114 0 43 chr1 30164374 30164420 -167031012 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 815 917 121 23 0 chr1 30164877 30165051 -167030381 + (GA)n Simple_repeat Simple_repeat 2 179 0 2 815 407 283 0 11 chr1 30166724 30166817 -167028615 + PB1 SINE Alu 29 120 -7 2 815 8504 139 39 6 chr1 30167084 30169540 -167025892 + Lx4A LINE L1 4507 7055 -3 2 815 27 81 0 0 chr1 30169540 30169602 -167025830 + AT_rich Low_complexity Low_complexity 1 62 0 2 815 995 265 128 27 chr1 30169713 30170089 -167025343 + MTD LTR MaLR 6 419 0 2 815 304 335 58 69 chr1 30170394 30170583 -167024849 + MIR SINE MIR 71 257 -5 2 815 1008 98 6 12 chr1 30171346 30171512 -167023920 + (TTC)n Simple_repeat Simple_repeat 1 165 0 2 815 6682 129 52 15 chr1 30171521 30172647 -167022785 - Lx3A LINE L1 -25 6956 5789 2 815 4387 111 3 12 chr1 30172645 30173310 -167022122 + Lx3A LINE L1 5173 5831 -55 2 815 211 295 0 0 chr1 30174558 30174619 -167020813 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 2 815 5392 115 7 10 chr1 30175187 30175768 -167019664 - L1_Mus4 LINE L1 -5 6631 6056 2 815 2577 44 2 167 chr1 30175768 30176205 -167019227 + RLTR10B2 LTR ERVK 1 365 0 2 815 5392 115 7 10 chr1 30176205 30176458 -167018974 - L1_Mus4 LINE L1 -581 6055 5799 2 815 533 162 0 0 chr1 30176458 30176565 -167018867 + L1_Mur2 LINE L1 5174 5286 -597 2 815 762 137 20 0 chr1 30176953 30177099 -167018333 + GA-rich Low_complexity Low_complexity 2 150 0 2 815 588 14 0 0 chr1 30177226 30177295 -167018137 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 2 815 472 255 0 58 chr1 30177486 30177640 -167017792 + Lx6 LINE L1 7290 7434 -26 2 815 186 71 0 0 chr1 30178901 30178929 -167016503 + (A)n Simple_repeat Simple_repeat 1 28 0 2 815 1466 136 49 0 chr1 30179584 30179827 -167015605 + ORR1A2 LTR MaLR 73 327 0 2 815 368 256 25 42 chr1 30180055 30180251 -167015181 - L1MA9 LINE L1 -126 6063 5872 2 815 912 311 54 35 chr1 30180298 30180671 -167014761 + MTD LTR MaLR 18 397 -22 2 815 414 0 0 0 chr1 30181244 30181290 -167014142 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 815 1522 221 88 20 chr1 30181422 30181908 -167013524 - RMER5 LTR ERV1 -1 533 15 2 815 303 339 104 26 chr1 30182057 30182366 -167013066 - L1M4c LINE L1 -3696 2683 2351 2 815 338 249 178 11 chr1 30182459 30182650 -167012782 - L1M4c LINE L1 -5053 1331 1109 2 815 1397 199 14 4 chr1 30182748 30183026 -167012406 + L1_Mur2 LINE L1 5462 5742 -135 2 815 267 368 30 6 chr1 30183095 30183259 -167012173 - L1M4c LINE L1 -6180 204 37 2 815 1050 288 187 49 chr1 30183427 30183800 -167011632 - Charlie1 DNA MER1_type -269 2512 2094 2 815 995 80 65 0 chr1 30183800 30183938 -167011494 + B1_Mus2 SINE Alu 1 147 0 2 815 1050 288 187 49 chr1 30183938 30184436 -167010996 - Charlie1 DNA MER1_type -688 2093 1521 2 815 707 291 156 6 chr1 30184436 30184750 -167010682 + ORR1E LTR MaLR 1 361 -9 2 815 43 76 0 0 chr1 30185147 30185239 -167010193 + AT_rich Low_complexity Low_complexity 1 92 0 2 815 934 254 132 41 chr1 30185386 30185898 -167009534 - Lx6 LINE L1 -4 7456 6479 2 815 525 303 16 54 chr1 30185894 30186079 -167009353 - Lx6 LINE L1 -686 6364 6187 2 815 24 32 0 0 chr1 30186266 30186297 -167009135 + AT_rich Low_complexity Low_complexity 1 31 0 2 815 1089 236 153 25 chr1 30186827 30187148 -167008284 + MTD LTR MaLR 58 419 0 2 815 26 50 0 0 chr1 30187254 30187294 -167008138 + AT_rich Low_complexity Low_complexity 1 40 0 2 815 716 335 42 42 chr1 30187643 30187979 -167007453 + Lx8 LINE L1 6325 6660 -813 2 815 436 252 68 25 chr1 30187989 30188107 -167007325 - MT2A LTR ERVL -404 129 7 2 815 679 292 22 11 chr1 30188138 30188405 -167007027 - Lx9 LINE L1 -226 7418 7149 2 815 1073 50 0 7 chr1 30188405 30188546 -167006886 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 2 815 1656 284 89 21 chr1 30188770 30189399 -167006033 - Lx9 LINE L1 -510 7134 6463 2 815 735 311 54 122 chr1 30189497 30190137 -167005295 - RLTR18 LTR ERVK -84 532 4 2 815 560 40 0 13 chr1 30190443 30190519 -167004913 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 815 1798 253 37 30 chr1 30191377 30191837 -167003595 - Lx9 LINE L1 -704 6940 6478 2 815 1539 292 35 51 chr1 30191827 30191922 -167003510 + Lx9 LINE L1 6924 7031 -613 2 815 288 0 0 0 chr1 30191922 30191954 -167003478 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 815 1539 292 35 51 chr1 30191954 30192582 -167002850 + Lx9 LINE L1 7032 7635 -9 2 815 484 333 84 0 chr1 30193561 30193786 -167001646 + MER58B DNA MER1_type 82 325 -16 2 815 186 43 0 0 chr1 30195197 30195220 -167000212 + (TAG)n Simple_repeat Simple_repeat 1 23 0 2 815 206 156 0 15 chr1 30195291 30195356 -167000076 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 815 342 0 0 0 chr1 30195467 30195505 -166999927 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 2 815 451 319 28 28 chr1 30196776 30196992 -166998440 - B3 SINE B2 0 216 1 2 815 202 200 0 0 chr1 30197589 30197634 -166997798 + GA-rich Low_complexity Low_complexity 2 46 0 2 815 1840 182 72 12 chr1 30198708 30199053 -166996379 + ORR1B2 LTR MaLR 2 367 0 2 815 450 328 8 0 chr1 30201100 30201225 -166994207 - B1F SINE Alu -16 133 8 2 815 536 301 0 43 chr1 30203496 30203635 -166991797 + B1_Mur2 SINE Alu 1 133 -16 2 815 233 77 51 0 chr1 30203677 30203716 -166991716 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 815 283 286 0 0 chr1 30203725 30203781 -166991651 + ID_B1 SINE B4 148 203 -21 2 815 255 316 53 0 chr1 30204097 30204192 -166991240 - L3 LINE CR1 -88 4401 4302 2 815 360 330 70 76 chr1 30204384 30204767 -166990665 + MT2A LTR ERVL 4 384 -149 2 815 256 297 101 7 chr1 30204824 30204963 -166990469 + MT2A LTR ERVL 338 489 -44 2 815 594 148 0 0 chr1 30204963 30205064 -166990368 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 815 6474 182 16 7 chr1 30205076 30206305 -166989127 - Lx4B LINE L1 -3 7055 5816 2 815 4419 156 4 39 chr1 30206305 30207096 -166988336 + L1_Mur2 LINE L1 3961 4723 -1154 2 815 198 103 0 0 chr1 30207096 30207125 -166988307 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 2 815 4419 156 4 39 chr1 30207125 30207175 -166988257 + L1_Mur2 LINE L1 4724 4771 -1106 2 815 225 188 0 0 chr1 30207175 30207255 -166988177 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 2 815 1023 197 9 35 chr1 30207256 30207487 -166987945 + L1_Mur2 LINE L1 4710 4934 -943 2 815 204 214 0 67 chr1 30207804 30207879 -166987553 + T-rich Low_complexity Low_complexity 1 70 0 2 815 1489 266 34 13 chr1 30207887 30208273 -166987159 + MTD LTR MaLR 27 400 -19 2 815 2836 59 3 0 chr1 30208907 30209263 -166986169 - L1Md_F2 LINE L1 -248 6334 5978 2 815 1262 55 53 27 chr1 30209263 30209450 -166985982 + L1Md_F2 LINE L1 6389 6580 -2 2 815 241 286 52 0 chr1 30209686 30209763 -166985669 - ID2 SINE ID -1 82 2 2 815 328 270 19 48 chr1 30209868 30209973 -166985459 - PB1D10 SINE Alu -3 114 13 2 815 24 0 0 0 chr1 30210366 30210390 -166985042 + AT_rich Low_complexity Low_complexity 1 24 0 2 815 247 241 8 108 chr1 30211940 30212070 -166983362 + L1M3 LINE L1 4103 4219 -1921 2 815 27 0 0 0 chr1 30212135 30212162 -166983270 + AT_rich Low_complexity Low_complexity 1 27 0 2 815 465 337 48 5 chr1 30212340 30212546 -166982886 - MTE2b-int LTR MaLR -1365 215 1 2 815 524 332 36 27 chr1 30212546 30212762 -166982670 - MTE2b LTR MaLR -12 367 150 2 815 1513 231 77 105 chr1 30212763 30213153 -166982279 + RLTR11A LTR ERVK 1 381 -147 2 815 1579 183 29 209 chr1 30213153 30213678 -166981754 - RLTR23 LTR ERV1 0 430 1 2 815 1513 231 77 105 chr1 30213678 30213830 -166981602 + RLTR11A LTR ERVK 382 528 0 2 815 383 238 45 54 chr1 30213833 30213944 -166981488 - MTE2b LTR MaLR -269 110 1 2 815 186 43 0 0 chr1 30215268 30215291 -166980141 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 815 273 29 0 0 chr1 30215660 30215694 -166979738 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2 815 759 100 0 0 chr1 30215694 30215803 -166979629 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 2 815 357 24 0 0 chr1 30216391 30216433 -166978999 + (T)n Simple_repeat Simple_repeat 1 42 0 2 815 39560 15 6 7 chr1 30216480 30222637 -166972795 - L1Md_A LINE L1 0 6582 440 2 815 448 324 0 7 chr1 30222910 30223047 -166972385 + ID_B1 SINE B4 87 222 -2 2 815 180 0 0 0 chr1 30223061 30223081 -166972351 + (A)n Simple_repeat Simple_repeat 1 20 0 2 815 180 283 38 0 chr1 30223730 30223783 -166971649 - MIR SINE MIR -30 232 178 2 815 226 361 110 22 chr1 30224543 30224679 -166970753 + MLT1H LTR MaLR 83 230 -319 2 815 752 335 89 3 chr1 30224894 30225241 -166970191 - Lx8 LINE L1 -174 7299 6923 2 815 233 239 116 34 chr1 30226910 30227057 -166968375 + Lx8 LINE L1 7314 7472 -1 2 815 366 357 18 2 chr1 30227271 30227411 -166968021 + B1F SINE Alu 1 147 0 2 815 477 0 0 0 chr1 30227636 30227689 -166967743 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 815 524 346 59 8 chr1 30228246 30228482 -166966950 - Lx8 LINE L1 -244 7229 6982 2 815 205 146 42 0 chr1 30228482 30228530 -166966902 + GA-rich Low_complexity Low_complexity 2 51 0 2 815 2249 224 43 12 chr1 30228548 30229055 -166966377 - Lx4B LINE L1 -4 7054 6532 2 815 651 288 0 40 chr1 30230176 30230400 -166965032 + B3 SINE B2 2 216 0 2 815 792 32 0 0 chr1 30230846 30230941 -166964491 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 2 815 309 264 35 21 chr1 30231064 30231207 -166964225 + Lx9 LINE L1 7373 7517 -127 2 815 454 201 10 82 chr1 30231229 30231424 -166964008 + Lx9 LINE L1 7458 7638 -6 2 815 304 344 8 23 chr1 30232185 30232313 -166963119 - ID_B1 SINE B4 -6 218 93 2 815 468 326 0 27 chr1 30232365 30232513 -166962919 + B3A SINE B2 1 144 -54 2 815 29 0 0 0 chr1 30232555 30232584 -166962848 + AT_rich Low_complexity Low_complexity 1 29 0 2 815 2276 221 137 10 chr1 30235194 30235778 -166959654 - RMER19A LTR ERVK 0 737 80 2 815 234 0 0 0 chr1 30235778 30235804 -166959628 + (A)n Simple_repeat Simple_repeat 1 26 0 2 815 393 138 0 0 chr1 30236492 30236572 -166958860 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 815 237 320 60 114 chr1 30236604 30236805 -166958627 - MLT2D LTR ERVL -130 284 95 3 815 263 322 8 17 chr1 30236868 30236985 -166958447 + A-rich Low_complexity Low_complexity 1 116 0 3 815 22 0 0 0 chr1 30237740 30237762 -166957670 + AT_rich Low_complexity Low_complexity 1 22 0 3 815 584 341 112 20 chr1 30240286 30240582 -166954850 + LTR33 LTR ERVL 191 513 -2 3 815 216 67 0 0 chr1 30240922 30240952 -166954480 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 815 305 254 124 85 chr1 30241003 30241132 -166954300 + MTEb LTR MaLR 18 151 -228 3 815 225 0 0 0 chr1 30241508 30241533 -166953899 + (T)n Simple_repeat Simple_repeat 1 25 0 3 815 573 244 36 101 chr1 30241691 30241910 -166953522 + MTEb LTR MaLR 162 366 -13 3 815 260 294 0 14 chr1 30242086 30242155 -166953277 + GA-rich Low_complexity Low_complexity 4 71 0 3 815 522 83 0 0 chr1 30242156 30242228 -166953204 + (GAA)n Simple_repeat Simple_repeat 3 74 0 3 815 258 32 0 0 chr1 30242239 30242270 -166953162 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 3 815 2220 96 0 15 chr1 30243040 30243367 -166952065 - L1Md_F2 LINE L1 -13 6569 6248 3 815 349 303 33 0 chr1 30243436 30243558 -166951874 - RMER15 LTR ERVL -43 532 407 3 815 258 225 0 0 chr1 30243672 30243783 -166951649 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 815 28 29 0 0 chr1 30244264 30244299 -166951133 + AT_rich Low_complexity Low_complexity 1 35 0 3 815 452 302 82 53 chr1 30244468 30244534 -166950898 - Lx9 LINE L1 -139 7505 7433 3 815 477 34 0 0 chr1 30244534 30244593 -166950839 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 815 452 302 82 53 chr1 30244593 30244771 -166950661 - Lx9 LINE L1 -212 7432 7254 3 815 2559 57 12 12 chr1 30244780 30245117 -166950315 + MT2C_Mm LTR ERVL 1 337 -138 3 815 1503 96 5 0 chr1 30245102 30245311 -166950121 + MTA_Mm LTR MaLR 187 396 0 3 815 1486 276 42 48 chr1 30245320 30245867 -166949565 - Lx9 LINE L1 -422 7222 6679 3 815 459 295 0 0 chr1 30245905 30246034 -166949398 - Lx9 LINE L1 -277 7367 7239 3 815 434 234 0 21 chr1 30246033 30246173 -166949259 + Lx9 LINE L1 7502 7638 -6 3 815 2432 221 26 4 chr1 30246254 30246745 -166948687 + Lx7 LINE L1 6546 7047 -649 3 815 331 290 0 0 chr1 30247086 30247155 -166948277 + RSINE1 SINE B4 84 152 -13 3 815 326 42 0 20 chr1 30247158 30247207 -166948225 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 815 365 58 0 19 chr1 30247222 30247275 -166948157 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 815 227 231 0 0 chr1 30247755 30247794 -166947638 - 4.5SRNA scRNA scRNA -55 39 1 3 815 677 329 49 38 chr1 30250152 30250519 -166944913 + Lx8 LINE L1 6435 6805 -668 3 815 22941 39 1 2 chr1 30250511 30254005 -166941427 - L1Md_F2 LINE L1 -14 6568 3079 3 815 465 348 44 30 chr1 30254012 30254308 -166941124 + Lx8 LINE L1 6788 7087 -386 3 815 1398 279 136 4 chr1 30254764 30254834 -166940598 + Lx6 LINE L1 6912 6991 -469 3 815 869 118 26 0 chr1 30254834 30254986 -166940446 + L1_Mus3 LINE L1 6478 6633 -5 3 815 1398 279 136 4 chr1 30254986 30255387 -166940045 + Lx6 LINE L1 6992 7444 -16 3 815 206 125 21 0 chr1 30255396 30255444 -166939988 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 815 497 16 0 16 chr1 30255668 30255731 -166939701 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 815 428 230 0 10 chr1 30257278 30257379 -166938053 + B1_Mur2 SINE Alu 7 106 -43 3 815 237 132 14 56 chr1 30257390 30257462 -166937970 + (TATAA)n Simple_repeat Simple_repeat 1 69 0 3 815 270 222 22 71 chr1 30257496 30257680 -166937752 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 3 815 352 243 53 0 chr1 30257641 30257810 -166937622 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 815 3226 279 59 28 chr1 30257825 30259109 -166936323 - Lx9 LINE L1 -4 7640 6317 3 815 389 129 14 0 chr1 30259205 30259275 -166936157 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 3 815 225 154 0 0 chr1 30259367 30259406 -166936026 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 3 815 631 288 33 69 chr1 30259894 30259981 -166935451 + MER44A DNA MER2_type 73 150 -189 3 815 3903 112 13 32 chr1 30259981 30260606 -166934826 + L1Md_F2 LINE L1 5967 6579 -3 3 815 631 288 33 69 chr1 30260606 30260794 -166934638 + MER44A DNA MER2_type 151 338 -1 3 815 279 349 62 49 chr1 30260837 30261081 -166934351 - MIRb SINE MIR -21 247 1 3 815 1111 236 65 96 chr1 30262476 30262634 -166932798 + ORR1D1 LTR MaLR 2 164 -210 3 815 783 104 0 0 chr1 30262634 30262749 -166932683 + (TC)n Simple_repeat Simple_repeat 2 116 0 3 815 1111 236 65 96 chr1 30262749 30262975 -166932457 + ORR1D1 LTR MaLR 165 374 0 3 815 1673 224 101 10 chr1 30263081 30263496 -166931936 + RMER6D LTR ERVK 264 716 -4 3 815 1134 78 0 0 chr1 30265140 30265294 -166930138 + (GA)n Simple_repeat Simple_repeat 1 154 0 3 815 246 273 106 38 chr1 30265726 30265886 -166929546 - MER33 DNA MER1_type -116 208 38 3 815 302 284 90 21 chr1 30265898 30266042 -166929390 - MLT1A1 LTR MaLR 0 408 255 3 815 396 0 0 0 chr1 30266510 30266554 -166928878 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 815 11211 67 41 0 chr1 30266892 30268390 -166927042 + L1Md_F2 LINE L1 4027 5586 -297 3 815 7970 53 4 0 chr1 30268390 30269382 -166926050 + L1Md_F2 LINE L1 5587 6582 0 3 815 4281 83 13 5 chr1 30269494 30270089 -166925343 + L1Md_F2 LINE L1 5983 6582 0 3 815 498 165 0 0 chr1 30271089 30271216 -166924216 + GA-rich Low_complexity Low_complexity 2 128 0 3 815 21 0 0 0 chr1 30271811 30271832 -166923600 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 1100 261 69 64 chr1 30271883 30272243 -166923189 + ORR1D2 LTR MaLR 9 370 0 3 815 214 330 0 134 chr1 30272743 30272855 -166922577 + PB1D10 SINE Alu 20 116 -1 3 815 1987 298 30 42 chr1 30273412 30274081 -166921351 - MER67B LTR ERV1 0 661 1 3 815 349 311 46 20 chr1 30275101 30275252 -166920180 - LTR16A LTR ERVL 0 451 297 3 815 387 105 0 0 chr1 30275370 30275427 -166920005 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 815 1132 226 201 7 chr1 30275578 30275881 -166919551 - ORR1D1 LTR MaLR -2 372 11 3 815 453 84 0 0 chr1 30277050 30277121 -166918311 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 3 815 447 106 0 0 chr1 30277175 30277241 -166918191 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 815 915 208 17 0 chr1 30277289 30277462 -166917970 + L1VL2 LINE L1 285 460 -5875 3 101 9575 182 7 14 chr1 30277453 30278511 -166916921 + Lx LINE L1 4057 5111 -772 3 816 1684 42 0 9 chr1 30278509 30278724 -166916708 + L1Md_F3 LINE L1 6372 6584 0 3 816 9575 182 7 14 chr1 30278724 30278957 -166916475 + Lx LINE L1 5110 5335 -548 3 816 2841 89 2 10 chr1 30278957 30279356 -166916076 + MTA_Mm LTR MaLR 1 396 0 3 816 9575 119 10 5 chr1 30279356 30280134 -166915298 + Lx LINE L1 5336 6115 -539 3 816 8459 105 27 11 chr1 30280133 30280545 -166914887 + MusHAL1 LINE L1 1146 1570 -2344 3 816 937 140 0 0 chr1 30280545 30280681 -166914751 + B1_Mus1 SINE Alu 2 137 -11 3 816 198 0 0 0 chr1 30280681 30280703 -166914729 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 816 8459 129 25 52 chr1 30280703 30282111 -166913321 + MusHAL1 LINE L1 1569 2594 -3283 3 816 5306 42 5 24 chr1 30282111 30282785 -166912647 + L1Md_F2 LINE L1 5920 6580 -2 3 816 7499 194 30 157 chr1 30282785 30283015 -166912417 + MusHAL1 LINE L1 2595 2799 -3078 3 816 234 0 0 0 chr1 30283015 30283041 -166912391 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 816 7499 194 30 157 chr1 30283041 30283104 -166912328 + MusHAL1 LINE L1 2800 2859 -3018 3 816 1280 59 6 0 chr1 30283104 30283274 -166912158 + (GA)n Simple_repeat Simple_repeat 2 172 0 3 816 7499 194 30 157 chr1 30283274 30283850 -166911582 + MusHAL1 LINE L1 2860 3473 -2404 3 816 558 0 0 0 chr1 30283850 30283912 -166911520 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 3 816 576 0 0 0 chr1 30283912 30283975 -166911457 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 3 816 7499 194 30 157 chr1 30283975 30284168 -166911264 + MusHAL1 LINE L1 3474 3673 -2204 3 816 6274 146 42 5 chr1 30284167 30285824 -166909608 + Lx LINE L1 4957 6654 0 3 816 23 54 0 0 chr1 30285893 30285930 -166909502 + AT_rich Low_complexity Low_complexity 1 37 0 3 816 252 0 0 0 chr1 30286243 30286271 -166909161 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 816 33 56 0 0 chr1 30286343 30286397 -166909035 + AT_rich Low_complexity Low_complexity 1 54 0 3 816 21 0 0 0 chr1 30286461 30286482 -166908950 + AT_rich Low_complexity Low_complexity 1 21 0 3 816 272 325 36 24 chr1 30286526 30286662 -166908770 + Lx8 LINE L1 6517 6751 -893 3 816 1395 218 25 0 chr1 30286699 30286974 -166908458 + ORR1D1 LTR MaLR 93 374 0 3 816 308 309 45 19 chr1 30287062 30287217 -166908215 + L1ME2 LINE L1 5795 5953 -211 3 816 905 282 123 44 chr1 30287463 30287633 -166907799 - ORR1D2 LTR MaLR 0 370 182 3 816 6339 66 2 12 chr1 30287633 30288465 -166906967 - L1_Mus2 LINE L1 -2 6564 5741 3 816 905 282 123 44 chr1 30288465 30288635 -166906797 - ORR1D2 LTR MaLR -189 181 3 3 816 2313 86 0 0 chr1 30289624 30289934 -166905498 + L1Md_F2 LINE L1 6093 6702 -279 3 816 1649 64 0 0 chr1 30290219 30290439 -166904993 + L1Md_F2 LINE L1 6363 6582 0 3 816 2896 276 115 18 chr1 30290565 30291409 -166904023 + L1_Mur3 LINE L1 1244 2134 -3746 3 816 234 0 0 0 chr1 30291409 30291435 -166903997 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 816 297 0 0 0 chr1 30291435 30291467 -166903965 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 816 2896 276 115 18 chr1 30291467 30292037 -166903395 + L1_Mur3 LINE L1 2135 2794 -3086 3 816 311 226 143 0 chr1 30292182 30292266 -166903166 + B3A SINE B2 9 104 -94 3 816 5416 174 43 12 chr1 30292274 30292604 -166902828 + MusHAL1 LINE L1 1063 1395 -1317 3 816 684 93 0 0 chr1 30292604 30292701 -166902731 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 816 5416 174 43 12 chr1 30292701 30292884 -166902548 + MusHAL1 LINE L1 1396 1595 -1117 3 816 1688 180 176 23 chr1 30292884 30293368 -166902064 + RLTR31_Mm LTR ERVK 4 561 0 3 816 5416 174 43 12 chr1 30293368 30293972 -166901460 + MusHAL1 LINE L1 1596 2214 -498 3 816 682 217 349 26 chr1 30293966 30294198 -166901234 + Lx2B LINE L1 6500 6806 -194 3 816 240 163 0 0 chr1 30294198 30294241 -166901191 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 816 25 75 0 0 chr1 30294285 30294338 -166901094 + AT_rich Low_complexity Low_complexity 1 53 0 3 816 8126 167 39 7 chr1 30294376 30296333 -166899099 - Lx4B LINE L1 -7 7051 5024 3 816 1675 89 25 32 chr1 30296339 30296634 -166898798 + ORR1A1 LTR MaLR 48 361 -6 3 816 941 128 75 6 chr1 30296634 30296807 -166898625 - Lx4B LINE L1 -891 4986 4802 3 816 1393 150 4 0 chr1 30296805 30297032 -166898400 + L1_Mur2 LINE L1 4381 4608 -1269 3 816 609 241 65 5 chr1 30298287 30298487 -166896945 + Lx7 LINE L1 5977 6188 -1508 3 816 222 23 22 65 chr1 30298490 30298536 -166896896 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 816 562 169 17 0 chr1 30298538 30298656 -166896776 + (CATATA)n Simple_repeat Simple_repeat 5 124 0 3 816 4814 243 54 57 chr1 30298673 30300119 -166895313 + Lx7 LINE L1 6255 7696 0 3 816 1110 82 0 14 chr1 30300538 30300686 -166894746 - B1_Mus1 SINE Alu -1 147 2 3 816 243 0 0 0 chr1 30300843 30300870 -166894562 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 816 2696 122 20 13 chr1 30301222 30301669 -166893763 - Lx LINE L1 -2 6652 6203 4 816 396 240 0 0 chr1 30301669 30301744 -166893688 - L1VL2 LINE L1 -5968 367 293 4 816 495 0 0 0 chr1 30301991 30302046 -166893386 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 816 271 301 5 52 chr1 30302058 30302146 -166893286 - PB1D10 SINE Alu -57 92 6 4 816 5198 114 11 0 chr1 30303063 30303816 -166891616 + Lx3A LINE L1 6210 6970 -11 4 816 357 125 0 0 chr1 30303816 30303872 -166891560 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 816 756 273 102 55 chr1 30304086 30304586 -166890846 - RMER4B LTR ERVK -9 576 18 4 816 22 0 0 0 chr1 30305211 30305233 -166890199 + AT_rich Low_complexity Low_complexity 1 22 0 4 816 1642 193 36 15 chr1 30305540 30305877 -166889555 + ORR1B1 LTR MaLR 51 394 0 4 816 312 292 64 16 chr1 30305888 30306076 -166889356 - L1MC2 LINE L1 -107 6237 6041 4 816 568 256 82 34 chr1 30306251 30306579 -166888853 - L1MC2 LINE L1 -800 5346 5003 4 816 777 118 0 0 chr1 30306642 30306761 -166888671 + (TC)n Simple_repeat Simple_repeat 2 120 0 4 816 510 284 31 66 chr1 30306774 30306970 -166888462 - MLT1A LTR MaLR 0 374 186 4 816 2463 113 18 1 chr1 30307006 30307469 -166887963 - Lx LINE L1 -708 5928 5460 4 816 4366 148 1 28 chr1 30307469 30308211 -166887221 + Lx LINE L1 5932 6653 -1 4 816 554 189 7 38 chr1 30308693 30308838 -166886594 + L1_Mur3 LINE L1 3724 3877 -2266 4 816 267 164 0 0 chr1 30308842 30308903 -166886529 + GA-rich Low_complexity Low_complexity 2 62 0 4 816 21 71 0 0 chr1 30309100 30309142 -166886290 + AT_rich Low_complexity Low_complexity 1 42 0 4 816 1598 236 74 5 chr1 30309378 30309769 -166885663 + MTD LTR MaLR 2 419 0 4 816 2304 314 91 25 chr1 30309932 30310855 -166884577 - Lx8 LINE L1 -2 7471 6488 4 816 839 214 67 85 chr1 30310880 30311346 -166884086 - RMER2 LTR ERV1 -9 558 1 4 816 259 350 20 47 chr1 30311349 30311499 -166883933 - Lx8 LINE L1 -1018 6455 6310 4 816 750 335 40 28 chr1 30311602 30312199 -166883233 - Lx8 LINE L1 -1335 6138 5572 4 816 29 28 0 0 chr1 30312306 30312342 -166883090 + AT_rich Low_complexity Low_complexity 1 36 0 4 816 1070 203 20 0 chr1 30312343 30312545 -166882887 + MTC LTR MaLR 5 210 -211 4 816 1120 44 15 0 chr1 30312545 30312682 -166882750 + B1_Mus2 SINE Alu 1 139 -8 4 816 980 226 27 32 chr1 30312718 30312937 -166882495 + MTC LTR MaLR 196 413 -8 4 816 5082 199 79 14 chr1 30312940 30314121 -166881311 + MTC-int LTR MaLR 2 1258 0 4 816 2154 186 20 20 chr1 30314121 30314516 -166880916 + MTC LTR MaLR 1 395 -26 4 816 202 268 0 18 chr1 30314601 30314658 -166880774 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 816 246 229 16 16 chr1 30315114 30315176 -166880256 + B4 SINE B4 25 86 -206 4 816 756 68 0 0 chr1 30315410 30315513 -166879919 + (GA)n Simple_repeat Simple_repeat 2 104 0 4 816 1423 184 109 3 chr1 30316201 30316485 -166878947 + Lx5 LINE L1 6734 7047 -3 4 816 316 298 11 35 chr1 30316549 30316636 -166878796 + B3A SINE B2 99 183 -15 4 816 382 309 0 54 chr1 30316670 30316800 -166878632 + Lx9 LINE L1 6405 6527 -1117 4 816 2249 272 90 28 chr1 30316791 30317549 -166877883 - Lx6 LINE L1 -16 7444 6290 4 816 540 284 175 17 chr1 30317770 30318005 -166877427 - MLT1A0 LTR MaLR -22 343 72 4 816 495 0 0 0 chr1 30318903 30318958 -166876474 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 816 219 114 0 0 chr1 30319001 30319036 -166876396 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 4 816 693 161 11 148 chr1 30319417 30319701 -166875731 + RMER17C LTR ERVK 1 245 -165 4 816 223 175 35 0 chr1 30319703 30319760 -166875672 + CT-rich Low_complexity Low_complexity 3 61 0 4 816 1046 199 24 39 chr1 30319768 30320098 -166875334 + RMER17C LTR ERVK 84 408 -2 4 816 252 0 0 0 chr1 30320216 30320244 -166875188 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 816 21 36 0 0 chr1 30322035 30322063 -166873369 + AT_rich Low_complexity Low_complexity 1 28 0 4 816 940 152 6 11 chr1 30322223 30322403 -166873029 + GA-rich Low_complexity Low_complexity 1 179 0 4 816 216 0 0 0 chr1 30322403 30322427 -166873005 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 4 816 3435 20 5 0 chr1 30322485 30322879 -166872553 - MTA_Mm LTR MaLR 0 396 1 4 816 9553 19 0 0 chr1 30322879 30323977 -166871455 - MTA_Mm-int LTR MaLR 0 1098 1 4 816 3422 20 5 0 chr1 30323977 30324371 -166871061 - MTA_Mm LTR MaLR 0 396 1 4 816 10740 76 0 0 chr1 30324387 30325822 -166869610 - L1_Mm LINE L1 -2049 3834 2400 4 816 2308 45 11 0 chr1 30325822 30326108 -166869324 + L1Md_F3 LINE L1 6295 6583 -1 4 816 1697 39 0 0 chr1 30326489 30326695 -166868737 - L1Md_F3 LINE L1 -566 6018 5813 4 816 573 34 91 0 chr1 30326695 30326783 -166868649 + L1Md_F3 LINE L1 6488 6583 -1 4 816 1064 81 0 0 chr1 30327314 30327450 -166867982 + B1_Mm SINE Alu 2 137 -10 4 816 306 0 0 0 chr1 30327450 30327484 -166867948 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 816 706 136 12 17 chr1 30328147 30328319 -166867113 + (TA)n Simple_repeat Simple_repeat 1 171 0 4 816 234 298 159 23 chr1 30328387 30328607 -166866825 - Lx8 LINE L1 -6 7467 7218 4 816 2005 318 86 34 chr1 30328728 30330328 -166865104 - Lx8 LINE L1 -409 7064 5371 4 816 1616 192 6 71 chr1 30330352 30330705 -166864727 + L1VL1 LINE L1 197 526 -5896 4 816 4308 103 0 0 chr1 30330703 30331324 -166864108 + L1_Mm LINE L1 4129 4749 -1134 4 816 2649 45 33 0 chr1 30331341 30331665 -166863767 + IAPEY2_LTR LTR ERVK 1 335 -22 4 816 1375 171 299 11 chr1 30331665 30331925 -166863507 + RLTR44B LTR ERVK 2 283 -166 4 816 2389 95 0 12 chr1 30331925 30332324 -166863108 + L1Md_F2 LINE L1 6227 6582 0 4 816 1375 171 299 11 chr1 30332324 30332410 -166863022 + RLTR44B LTR ERVK 284 447 -2 4 816 3617 128 0 9 chr1 30332410 30332978 -166862454 + L1_Mm LINE L1 4744 5306 -577 4 816 277 237 77 26 chr1 30332982 30333060 -166862372 + RLTR25B LTR ERVK 428 509 -519 4 816 731 84 0 0 chr1 30332998 30333093 -166862339 + B1_Mus2 SINE Alu 43 137 -10 4 816 420 20 0 0 chr1 30333093 30333142 -166862290 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 816 3105 111 6 26 chr1 30333150 30333623 -166861809 + L1_Mus3 LINE L1 5326 5768 -115 4 816 297 0 0 0 chr1 30333623 30333656 -166861776 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 816 1074 66 0 42 chr1 30333656 30333799 -166861633 - B1_Mm SINE Alu -10 137 1 4 816 4287 120 23 23 chr1 30333799 30334606 -166860826 + L1_Mus3 LINE L1 5769 6631 -7 4 816 1398 287 86 9 chr1 30334611 30335264 -166860168 - L1_Mur3 LINE L1 -524 5356 4654 4 816 191 22 61 61 chr1 30335312 30335361 -166860071 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 4 816 696 219 7 7 chr1 30335399 30335546 -166859886 - B1_Mur3 SINE Alu 0 149 3 4 816 1961 297 50 20 chr1 30335550 30336676 -166858756 - L1_Mur3 LINE L1 -1836 4044 2886 4 816 5523 103 6 0 chr1 30336705 30337485 -166857947 - L1_Mus1 LINE L1 0 6567 5783 4 816 8431 45 2 2 chr1 30337498 30339317 -166856115 - L1Md_F2 LINE L1 0 6582 4764 4 816 2112 289 41 46 chr1 30339314 30340671 -166854761 - L1_Mur3 LINE L1 -2981 2899 1549 4 816 6037 58 38 9 chr1 30340798 30341583 -166853849 + RLTR13C2 LTR ERVK 1 808 0 4 816 180 0 0 0 chr1 30341887 30341907 -166853525 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 816 215 211 35 0 chr1 30343604 30343661 -166851771 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 816 362 224 0 0 chr1 30343761 30343828 -166851604 - ID SINE ID -156 68 2 4 816 409 231 10 87 chr1 30344214 30344318 -166851114 - RMER30 DNA MER1_type 0 202 107 4 816 314 343 21 120 chr1 30344215 30344407 -166851025 + Charlie12 DNA MER1_type 1 173 -2700 4 816 21 36 0 0 chr1 30345077 30345105 -166850327 + AT_rich Low_complexity Low_complexity 1 28 0 4 816 21 71 0 0 chr1 30347209 30347251 -166848181 + AT_rich Low_complexity Low_complexity 1 42 0 4 816 3041 77 5 2 chr1 30347604 30348019 -166847413 - BGLII LTR ERVK -2 419 4 4 816 733 200 96 0 chr1 30348019 30348249 -166847183 - MYSERV16_I-int LTR ERVK 0 2326 2075 4 816 32110 70 2 16 chr1 30348265 30353449 -166841983 + L1Md_F2 LINE L1 478 5586 -297 4 816 7947 55 2 2 chr1 30353449 30354445 -166840987 + L1Md_F2 LINE L1 5587 6582 0 4 816 1463 202 75 36 chr1 30354464 30354879 -166840553 - MYSERV16_I-int LTR ERVK -285 2041 1611 4 816 662 97 19 0 chr1 30355037 30355140 -166840292 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 4 816 4169 258 23 29 chr1 30355700 30356868 -166838564 + RodERV21-int LTR ERV1 1558 2718 -2273 4 816 265 289 10 0 chr1 30358474 30358571 -166836861 + MER52-int LTR ERV1 5675 5772 -1319 4 816 1067 151 17 0 chr1 30358839 30359018 -166836414 - BGLII LTR ERVK -236 185 4 4 816 1386 30 0 0 chr1 30359050 30359217 -166836215 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 816 484 298 38 0 chr1 30359221 30359352 -166836080 - B3 SINE B2 -53 163 28 4 816 5686 108 30 12 chr1 30359369 30360234 -166835198 - Lx2 LINE L1 -1 6996 6116 4 816 202 87 21 21 chr1 30360693 30360740 -166834692 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 4 816 1138 66 0 0 chr1 30360750 30360886 -166834546 - B1_Mus1 SINE Alu -9 139 4 4 816 3162 3 0 0 chr1 30360894 30361270 -166834162 + L1Md_A LINE L1 3805 4180 -1703 4 816 39059 7 2 1 chr1 30361265 30368223 -166827209 - L1Md_A LINE L1 0 6582 1 4 816 12108 7 0 0 chr1 30368219 30369644 -166825788 + L1Md_A LINE L1 4162 5586 -297 4 816 8787 17 0 0 chr1 30369644 30370640 -166824792 + L1Md_A LINE L1 5587 6582 0 4 816 560 271 8 0 chr1 30370809 30370931 -166824501 + B1_Mur1 SINE Alu 6 128 -21 4 816 495 153 94 31 chr1 30370962 30371090 -166824342 + Lx7 LINE L1 7559 7694 -2 4 816 1194 0 20 0 chr1 30371113 30371259 -166824173 + (TAGA)n Simple_repeat Simple_repeat 1 149 0 4 816 1981 181 14 14 chr1 30371289 30371654 -166823778 + ORR1B2 LTR MaLR 3 367 0 4 816 845 234 67 19 chr1 30372272 30372481 -166822951 + URR1B DNA MER1_type 7 225 0 4 816 977 242 130 10 chr1 30373022 30373322 -166822110 + Lx6 LINE L1 6081 6416 -1044 4 816 494 219 16 8 chr1 30374218 30374347 -166821085 - Lx5 LINE L1 0 7050 6921 4 816 25 0 0 0 chr1 30375829 30375854 -166819578 + AT_rich Low_complexity Low_complexity 1 25 0 4 816 657 273 11 32 chr1 30376272 30376461 -166818971 + B3A SINE B2 1 185 -13 4 816 2242 242 114 11 chr1 30376472 30377094 -166818338 + Lx6 LINE L1 6761 7446 -14 4 816 231 263 168 8 chr1 30377107 30377226 -166818206 + Lx5 LINE L1 6907 7044 -6 4 816 23 0 0 0 chr1 30378366 30378389 -166817043 + AT_rich Low_complexity Low_complexity 1 23 0 4 816 202 238 49 12 chr1 30378392 30378473 -166816959 + (CATAT)n Simple_repeat Simple_repeat 2 85 0 4 816 183 42 0 0 chr1 30378882 30378906 -166816526 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 816 547 203 161 15 chr1 30379032 30379162 -166816270 + B1_Mur1 SINE Alu 1 149 0 4 816 182 389 54 34 chr1 30379355 30379504 -166815928 + MIR SINE MIR 2 153 -109 4 816 462 36 0 0 chr1 30379988 30380044 -166815388 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 5 816 878 92 0 8 chr1 30380052 30380183 -166815249 + (GGGAA)n Simple_repeat Simple_repeat 1 130 0 5 816 3018 300 71 47 chr1 30380439 30381745 -166813687 - Lx7 LINE L1 -420 7276 5940 5 816 321 26 0 0 chr1 30381745 30381783 -166813649 + (TGG)n Simple_repeat Simple_repeat 1 38 0 5 816 3018 265 63 51 chr1 30381783 30382369 -166813063 - Lx7 LINE L1 -1757 5939 5341 5 816 461 252 22 78 chr1 30382368 30382600 -166812832 - Lx7 LINE L1 -2674 3206 2988 5 816 2699 93 50 23 chr1 30382663 30383059 -166812373 + MTB_Mm LTR MaLR 1 407 0 5 816 2740 13 0 0 chr1 30383067 30383378 -166812054 + L1Md_A LINE L1 6272 6582 0 5 816 231 61 0 0 chr1 30383400 30383433 -166811999 + (A)n Simple_repeat Simple_repeat 1 33 0 5 816 1336 296 57 10 chr1 30383453 30384142 -166811290 - Lx6 LINE L1 -101 7359 6349 5 816 2226 262 21 9 chr1 30384170 30384952 -166810480 - Lx7 LINE L1 -3188 2659 1847 5 816 1096 76 14 0 chr1 30385803 30385947 -166809485 + B1_Mus1 SINE Alu 3 148 0 5 816 915 73 0 0 chr1 30386043 30386167 -166809265 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 5 816 509 264 124 12 chr1 30386283 30386452 -166808980 + B3A SINE B2 1 188 -10 5 816 404 362 16 0 chr1 30386560 30386687 -166808745 + RSINE1 SINE B4 17 145 -20 5 816 378 0 0 0 chr1 30386688 30386730 -166808702 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 816 5548 184 53 14 chr1 30386737 30388432 -166807000 - Lx5 LINE L1 -7 7043 5268 5 816 1092 275 25 29 chr1 30388437 30388714 -166806718 - MTEb LTR MaLR -101 278 3 5 816 21 36 0 0 chr1 30388986 30389014 -166806418 + AT_rich Low_complexity Low_complexity 1 28 0 5 816 648 285 92 10 chr1 30389091 30389286 -166806146 - B3 SINE B2 -4 212 2 5 816 21 57 0 0 chr1 30389363 30389398 -166806034 + AT_rich Low_complexity Low_complexity 1 35 0 5 816 2730 65 3 31 chr1 30389570 30389954 -166805478 + L1Md_F2 LINE L1 6113 6485 -97 5 816 35336 26 3 7 chr1 30389954 30395358 -166800074 + L1Md_A LINE L1 208 5585 -298 5 816 8391 28 9 0 chr1 30395359 30396346 -166799086 + L1Md_A LINE L1 5587 6582 0 5 816 543 73 41 20 chr1 30396345 30396443 -166798989 + L1Md_F2 LINE L1 6471 6570 -12 5 816 277 264 75 31 chr1 30396479 30396498 -166798934 + ORR1B1-int LTR MaLR 587 607 -902 5 816 1586 44 10 5 chr1 30396498 30396705 -166798727 + L1Md_F3 LINE L1 6365 6572 -12 5 816 277 264 75 31 chr1 30396705 30396738 -166798694 + ORR1B1-int LTR MaLR 608 646 -863 5 816 851 100 0 0 chr1 30396738 30396858 -166798574 + B1_Mus1 SINE Alu 1 120 -28 5 816 831 122 0 0 chr1 30396858 30396989 -166798443 + (GA)n Simple_repeat Simple_repeat 2 132 0 5 816 201 39 0 0 chr1 30397206 30397232 -166798200 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 816 878 124 21 7 chr1 30397236 30397379 -166798053 - B2_Mm2 SINE B2 -39 156 17 5 816 295 219 43 28 chr1 30398035 30398176 -166797256 + (TA)n Simple_repeat Simple_repeat 2 144 0 5 816 27 0 0 0 chr1 30398414 30398441 -166796991 + AT_rich Low_complexity Low_complexity 1 27 0 5 816 389 173 36 18 chr1 30398474 30398586 -166796846 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 5 816 185 330 121 0 chr1 30398604 30398695 -166796737 - MER5A DNA MER1_type -83 106 5 5 816 403 277 114 6 chr1 30398793 30398960 -166796472 - MIRc SINE MIR -15 253 69 5 816 431 298 45 15 chr1 30398984 30399117 -166796315 + MIRc SINE MIR 2 138 -130 5 816 321 357 23 0 chr1 30402314 30402443 -166792989 - Arthur1B DNA Tip100 -810 415 284 5 816 192 27 26 51 chr1 30402540 30402579 -166792853 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 816 307 298 121 0 chr1 30402579 30402703 -166792729 - Arthur1B DNA Tip100 -1059 166 28 5 816 25 0 0 0 chr1 30403434 30403459 -166791973 + AT_rich Low_complexity Low_complexity 1 25 0 5 816 3682 216 77 5 chr1 30403536 30404425 -166791007 - Lx9 LINE L1 -309 7335 6383 5 816 322 319 140 43 chr1 30404436 30404950 -166790482 - L1MC1 LINE L1 -18 6315 5752 5 816 732 253 26 41 chr1 30405777 30405971 -166789461 + ORR1E LTR MaLR 1 191 -168 5 816 417 123 0 0 chr1 30405971 30406036 -166789396 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 816 455 0 0 18 chr1 30406036 30406092 -166789340 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 816 387 160 0 0 chr1 30406192 30406286 -166789146 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 816 372 318 2 2 chr1 30406494 30406609 -166788823 - ORR1E LTR MaLR -5 365 251 5 816 314 295 17 35 chr1 30406710 30406826 -166788606 + RSINE1 SINE B4 49 162 -3 5 816 393 22 0 0 chr1 30407914 30407960 -166787472 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 12 1717 297 36 46 chr1 30408295 30409076 -166786356 - Lx9 LINE L1 -16 7628 6856 5 817 259 269 28 0 chr1 30409099 30409207 -166786225 + (TA)n Simple_repeat Simple_repeat 2 112 0 5 817 22 0 0 0 chr1 30410104 30410126 -166785306 + AT_rich Low_complexity Low_complexity 1 22 0 5 817 7250 77 0 2 chr1 30410153 30411246 -166784186 + L1_Mus2 LINE L1 5475 6565 -1 5 817 1020 122 7 0 chr1 30411251 30411398 -166784034 + B1_Mus1 SINE Alu 1 148 0 5 817 217 68 0 43 chr1 30411398 30411444 -166783988 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 817 3110 67 5 16 chr1 30411644 30412070 -166783362 + BGLII LTR ERVK 1 421 0 5 817 23 33 0 0 chr1 30412285 30412315 -166783117 + AT_rich Low_complexity Low_complexity 1 30 0 5 817 21 36 0 0 chr1 30412652 30412680 -166782752 + AT_rich Low_complexity Low_complexity 1 28 0 5 817 286 297 228 0 chr1 30412737 30412882 -166782550 - MTE2b LTR MaLR -53 366 189 5 817 1674 242 128 27 chr1 30412906 30413454 -166781978 - Lx6 LINE L1 -59 7401 6799 5 817 464 286 58 39 chr1 30413451 30413709 -166781723 - L1MA8 LINE L1 -259 6032 5770 5 817 1632 220 132 0 chr1 30413726 30414265 -166781167 - Lx9 LINE L1 -1 7643 7034 5 817 712 267 122 0 chr1 30414319 30414499 -166780933 - B3 SINE B2 -5 211 10 5 817 627 14 0 0 chr1 30414512 30414584 -166780848 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 5 817 386 301 61 56 chr1 30414597 30414837 -166780595 - MTE2b LTR MaLR -165 214 1 5 817 22 56 0 0 chr1 30414921 30414957 -166780475 + AT_rich Low_complexity Low_complexity 1 36 0 5 817 760 237 50 5 chr1 30414971 30415170 -166780262 - B3 SINE B2 -6 210 3 5 817 1841 172 62 19 chr1 30415185 30415559 -166779873 + RMER20B LTR ERVK 1 390 -237 5 817 1261 280 133 81 chr1 30415621 30416177 -166779255 - MTE-int LTR MaLR -145 1435 851 5 817 5055 89 4 3 chr1 30416178 30416908 -166778524 - L1_Mus3 LINE L1 -296 6340 5610 5 817 1778 87 105 0 chr1 30416909 30417185 -166778247 + L1_Mus3 LINE L1 6329 6633 -5 5 817 533 302 81 12 chr1 30417225 30417386 -166778046 - MTE2a LTR MaLR -189 190 19 5 817 375 176 0 0 chr1 30417726 30417817 -166777615 + GA-rich Low_complexity Low_complexity 2 92 0 5 817 391 289 145 19 chr1 30418429 30418588 -166776844 - MER58A DNA MER1_type -15 209 31 5 817 1398 256 31 24 chr1 30419615 30420031 -166775401 - MTD LTR MaLR 0 419 1 5 817 210 136 0 0 chr1 30420050 30420094 -166775338 + (T)n Simple_repeat Simple_repeat 1 44 0 5 817 22 0 0 0 chr1 30420822 30420844 -166774588 + AT_rich Low_complexity Low_complexity 1 22 0 5 817 356 292 106 15 chr1 30420893 30421091 -166774341 + B3 SINE B2 1 216 0 5 817 1326 42 5 18 chr1 30421298 30421518 -166773914 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 5 817 1295 93 5 20 chr1 30421688 30421886 -166773546 + B2_Mm2 SINE B2 1 195 0 5 817 395 298 0 21 chr1 30422121 30422217 -166773215 + B4A SINE B4 2 95 -197 5 817 489 244 0 0 chr1 30422342 30422477 -166772955 + CT-rich Low_complexity Low_complexity 2 136 0 5 817 830 292 143 40 chr1 30424728 30425231 -166770201 + Lx8 LINE L1 6917 7471 -2 5 817 239 312 116 8 chr1 30426382 30426511 -166768921 + MLT1E1A LTR MaLR 9 151 -529 5 817 308 343 76 86 chr1 30426610 30426932 -166768500 + MLT1E1A LTR MaLR 309 627 0 5 817 1805 222 94 4 chr1 30426994 30427492 -166767940 + Lx9 LINE L1 7049 7591 -53 5 817 180 0 0 0 chr1 30427539 30427559 -166767873 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 817 36308 17 1 8 chr1 30427633 30433659 -166761773 + L1Md_A LINE L1 1 5586 -297 5 817 8890 12 0 0 chr1 30433659 30434655 -166760777 + L1Md_A LINE L1 5587 6582 0 5 817 967 189 26 0 chr1 30434706 30434897 -166760535 + RMER1C Other Other 997 1192 -150 5 817 245 224 0 38 chr1 30434902 30434981 -166760451 + CT-rich Low_complexity Low_complexity 3 78 0 5 817 24 0 0 0 chr1 30434985 30435009 -166760423 + AT_rich Low_complexity Low_complexity 1 24 0 5 817 18826 138 50 11 chr1 30435078 30437291 -166758141 - L1_Mus2 LINE L1 -1 6565 4242 5 817 603 0 0 0 chr1 30437291 30437358 -166758074 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 5 817 279 0 0 0 chr1 30437359 30437390 -166758042 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 5 817 1105 71 14 0 chr1 30437390 30437530 -166757902 - B1_Mur4 SINE Alu -8 142 1 5 817 18826 182 85 11 chr1 30437530 30437637 -166757795 - L1_Mus2 LINE L1 -1645 4241 3916 5 817 2817 50 9 0 chr1 30437637 30437980 -166757452 - ORR1A0 LTR MaLR 0 346 1 5 817 18826 182 85 11 chr1 30437980 30438554 -166756878 - L1_Mus2 LINE L1 -1971 3915 3349 5 817 234 0 0 0 chr1 30438554 30438580 -166756852 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 817 18826 182 85 11 chr1 30438580 30439907 -166755525 - L1_Mus2 LINE L1 -2538 3348 2036 5 817 3307 41 5 0 chr1 30439907 30440301 -166755131 + MTA_Mm LTR MaLR 1 396 0 5 817 8667 48 22 1 chr1 30440301 30441376 -166754056 + MTA_Mm-int LTR MaLR 1 1098 0 5 817 3365 33 5 0 chr1 30441376 30441770 -166753662 + MTA_Mm LTR MaLR 1 396 0 5 817 18826 184 70 42 chr1 30441770 30443434 -166751998 - L1_Mus2 LINE L1 -3851 2035 371 5 817 576 211 0 47 chr1 30443459 30443621 -166751811 + RMER1C Other Other 1196 1333 -9 5 817 1762 269 62 33 chr1 30443827 30445022 -166750410 - Lx6 LINE L1 -28 7432 5910 5 817 236 226 38 0 chr1 30445835 30445888 -166749544 - B1F SINE Alu -1 148 94 5 817 984 135 93 42 chr1 30446335 30446528 -166748904 - Lx LINE L1 -88 6566 6364 5 817 704 252 95 37 chr1 30446557 30446800 -166748632 + RMER20B LTR ERVK 147 403 -224 5 817 1198 276 88 6 chr1 30448057 30448396 -166747036 + MTEb LTR MaLR 1 367 -12 5 817 403 367 40 55 chr1 30448537 30448736 -166746696 - MER58A DNA MER1_type -1 223 28 5 817 825 124 0 0 chr1 30449609 30449738 -166745694 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 5 817 25 51 0 0 chr1 30449863 30449902 -166745530 + AT_rich Low_complexity Low_complexity 1 39 0 5 817 230 320 117 53 chr1 30450204 30450568 -166744864 + L1MEf LINE L1 973 1358 -4842 5 817 3980 54 2 4 chr1 30450568 30451068 -166744364 + L1Md_F2 LINE L1 6084 6582 0 6 817 230 320 117 53 chr1 30451068 30451234 -166744198 + L1MEf LINE L1 1359 1537 -4663 5 817 2939 212 12 8 chr1 30451353 30451942 -166743490 + Lx7 LINE L1 6316 6906 -790 6 817 625 75 10 31 chr1 30451946 30452042 -166743390 - ORR1B2 LTR MaLR -8 359 266 6 817 7454 74 8 0 chr1 30452060 30453247 -166742185 - L1_Mus2 LINE L1 0 6566 5365 6 817 2940 135 10 4 chr1 30453241 30453726 -166741706 + L1_Mm LINE L1 4914 5401 -482 6 817 1116 204 52 73 chr1 30453726 30454012 -166741420 - ORR1B2 LTR MaLR -87 280 1 6 817 660 139 60 17 chr1 30454012 30454129 -166741303 + Lx7 LINE L1 6902 7023 -673 6 817 253 351 68 31 chr1 30454364 30454555 -166740877 - MIR SINE MIR -38 224 27 6 817 210 296 0 18 chr1 30454899 30454954 -166740478 + ID4 SINE ID 2 55 -28 6 817 2192 160 17 49 chr1 30455213 30455620 -166739812 - ORR1B1 LTR MaLR 0 394 1 6 817 365 253 102 175 chr1 30455645 30455822 -166739610 + RSINE1 SINE B4 2 165 0 6 817 914 337 108 47 chr1 30455865 30456117 -166739315 - Lx9 LINE L1 -1044 6429 6167 6 817 392 37 0 18 chr1 30456117 30456172 -166739260 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 817 4819 256 96 35 chr1 30456172 30457477 -166737955 - Lx9 LINE L1 -1307 6166 4765 6 817 4005 69 60 28 chr1 30457477 30458046 -166737386 - LTRIS_Mus LTR ERV1 0 587 1 6 817 4819 247 84 38 chr1 30458046 30458770 -166736662 - Lx9 LINE L1 -1083 4764 4023 6 817 3470 214 83 70 chr1 30458789 30459500 -166735932 - RLTR13D4 LTR ERVK -6 1027 343 6 817 1115 89 7 0 chr1 30459500 30459646 -166735786 - B1_Mus2 SINE Alu 0 147 1 6 817 3470 214 83 70 chr1 30459646 30459948 -166735484 - RLTR13D4 LTR ERVK -691 342 2 6 817 436 319 0 7 chr1 30459952 30460091 -166735341 + Lx9 LINE L1 7233 7370 -274 6 817 198 0 0 0 chr1 30460277 30460299 -166735133 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 817 180 0 0 0 chr1 30460433 30460453 -166734979 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 817 420 36 0 0 chr1 30460566 30460621 -166734811 + B1_Mur4 SINE Alu 96 150 0 6 817 369 0 0 0 chr1 30460831 30460872 -166734560 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 6 817 447 73 0 0 chr1 30461058 30461126 -166734306 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 817 23 0 0 0 chr1 30462163 30462186 -166733246 + AT_rich Low_complexity Low_complexity 1 23 0 6 817 413 214 96 30 chr1 30463294 30463429 -166732003 + RMER5 LTR ERV1 386 529 -5 6 817 191 175 0 17 chr1 30463437 30463495 -166731937 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 6 817 342 138 0 0 chr1 30463594 30463652 -166731780 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 817 882 274 46 60 chr1 30463740 30464089 -166731343 - L1_Rod LINE L1 -18 5829 5486 6 817 366 291 133 54 chr1 30464216 30464608 -166730824 + L1M2 LINE L1 2152 2574 -4275 6 817 566 199 42 56 chr1 30464797 30464941 -166730491 + RLTR20B3 LTR ERVK 7 148 -429 6 817 6632 123 12 26 chr1 30464992 30466082 -166729350 + Lx2A LINE L1 5934 7008 0 6 817 237 294 43 17 chr1 30466084 30466215 -166729217 + L1_Mur1 LINE L1 2141 2274 -1640 6 817 27 29 0 0 chr1 30466692 30466726 -166728706 + AT_rich Low_complexity Low_complexity 1 34 0 6 817 1800 184 55 42 chr1 30467377 30467758 -166727674 - ORR1B1 LTR MaLR -8 386 1 6 817 267 103 0 0 chr1 30468155 30468194 -166727238 + (CTTTG)n Simple_repeat Simple_repeat 1 39 0 6 817 1022 112 6 0 chr1 30468194 30468371 -166727061 + (GCTTG)n Simple_repeat Simple_repeat 2 180 0 6 817 1722 161 82 36 chr1 30469806 30470017 -166725415 + RMER17C LTR ERVK 1 226 -184 6 817 405 39 0 0 chr1 30470017 30470068 -166725364 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 817 1722 161 82 36 chr1 30470068 30470248 -166725184 + RMER17C LTR ERVK 227 409 -1 6 817 3016 95 158 30 chr1 30470610 30471110 -166724322 + LTRIS2 LTR ERV1 1 564 0 6 817 352 239 23 0 chr1 30471623 30471711 -166723721 + Lx9 LINE L1 7394 7483 -161 6 817 189 121 0 0 chr1 30471727 30471760 -166723672 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 6 817 1167 208 70 61 chr1 30471883 30472276 -166723156 + MER67C LTR ERV1 1 413 -298 6 817 214 283 16 16 chr1 30472309 30472370 -166723062 - ID4_ SINE ID -22 61 1 6 817 303 49 0 0 chr1 30472545 30472586 -166722846 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 817 528 335 43 39 chr1 30472587 30472816 -166722616 + B4A SINE B4 4 233 -59 6 817 1396 172 26 75 chr1 30472816 30473200 -166722232 - RMER17C LTR ERVK 0 410 46 6 817 258 32 0 0 chr1 30473224 30473255 -166722177 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 817 1499 0 0 0 chr1 30476018 30476194 -166719238 + L1Md_T LINE L1 6407 6582 0 6 817 180 97 0 0 chr1 30476585 30476616 -166718816 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 6 817 219 23 44 44 chr1 30476616 30476661 -166718771 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 817 297 0 0 0 chr1 30477440 30477473 -166717959 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 6 817 311 242 0 15 chr1 30479772 30479839 -166715593 + B3A SINE B2 1 66 -132 6 817 266 183 267 9 chr1 30480858 30480974 -166714458 - LTR37A LTR ERV1 0 426 281 6 817 16797 129 31 10 chr1 30481313 30484874 -166710558 + L1Md_F LINE L1 184 3819 -2064 6 817 1743 143 186 6 chr1 30485016 30485361 -166710071 - MTB_Mm LTR MaLR 0 407 1 6 817 5373 160 132 10 chr1 30485363 30485609 -166709823 - MTB_Mm-int LTR MaLR -2 1256 960 6 817 180 0 0 0 chr1 30485609 30485629 -166709803 + (CAAAT)n Simple_repeat Simple_repeat 3 22 0 6 817 5373 160 132 10 chr1 30485629 30486486 -166708946 - MTB_Mm-int LTR MaLR -299 959 18 6 817 1539 193 148 86 chr1 30486494 30486541 -166708891 - MT2B LTR ERVL 0 601 559 6 817 955 45 16 78 chr1 30486541 30486733 -166708699 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 817 1539 193 148 86 chr1 30486733 30487206 -166708226 - MT2B LTR ERVL -43 558 49 6 817 330 310 7 58 chr1 30487401 30487555 -166707877 + Charlie1a DNA MER1_type 836 981 -474 6 817 24 53 0 0 chr1 30487771 30487809 -166707623 + AT_rich Low_complexity Low_complexity 1 38 0 6 817 478 271 23 12 chr1 30487828 30487977 -166707455 + B1F1 SINE Alu 1 144 -3 6 817 23 68 0 0 chr1 30488362 30488406 -166707026 + AT_rich Low_complexity Low_complexity 1 44 0 6 817 402 21 0 0 chr1 30488406 30488453 -166706979 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 817 273 277 24 0 chr1 30488490 30488573 -166706859 - MLT1E1A LTR MaLR -2 678 594 6 817 235 320 21 0 chr1 30488588 30488685 -166706747 + L1ME3A LINE L1 6038 6136 -37 6 817 24 32 0 0 chr1 30489104 30489135 -166706297 + AT_rich Low_complexity Low_complexity 1 31 0 6 817 230 289 26 26 chr1 30489156 30489273 -166706159 + L1_Rod LINE L1 5721 5837 -10 6 817 857 143 48 27 chr1 30489373 30489560 -166705872 + B2_Mm2 SINE B2 3 193 -2 6 817 492 72 0 0 chr1 30489564 30489633 -166705799 + (CAAGA)n Simple_repeat Simple_repeat 2 70 0 6 817 29 28 0 0 chr1 30489762 30489798 -166705634 + AT_rich Low_complexity Low_complexity 1 36 0 6 817 34 24 0 0 chr1 30489941 30489982 -166705450 + AT_rich Low_complexity Low_complexity 1 41 0 6 817 479 336 23 8 chr1 30489999 30490128 -166705304 + RSINE1 SINE B4 3 133 -32 6 817 1395 216 11 7 chr1 30490131 30490401 -166705031 + MTD LTR MaLR 1 271 -148 6 817 4047 138 30 0 chr1 30490448 30490523 -166704909 - Lx3B LINE L1 -2 6971 6896 6 817 186 43 0 0 chr1 30490523 30490546 -166704886 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 6 817 4047 138 30 0 chr1 30490546 30491114 -166704318 - Lx3B LINE L1 -78 6895 6310 6 817 736 44 0 9 chr1 30491121 30491236 -166704196 + L1Md_F2 LINE L1 6469 6582 0 6 817 5450 83 0 3 chr1 30491240 30492126 -166703306 - Lx3B LINE L1 -959 6014 5137 6 817 1217 284 45 21 chr1 30492191 30492797 -166702635 + Lx8 LINE L1 5259 5914 -1559 6 817 341 274 157 0 chr1 30493061 30493163 -166702269 + Lx8 LINE L1 6224 6341 -1132 6 817 680 172 0 8 chr1 30493983 30494100 -166701332 - Lx7 LINE L1 -688 7008 6893 6 817 1951 230 28 5 chr1 30494353 30494790 -166700642 - Lx6 LINE L1 -386 7074 6628 6 817 543 287 128 6 chr1 30495370 30495542 -166699890 - B3 SINE B2 0 216 24 6 817 288 0 0 0 chr1 30496389 30496421 -166699011 + (A)n Simple_repeat Simple_repeat 1 32 0 6 817 1307 53 0 0 chr1 30496818 30496977 -166698455 + B2_Mm1a SINE B2 2 160 -33 6 817 378 0 0 0 chr1 30496977 30497019 -166698413 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 817 5779 252 91 19 chr1 30497635 30500000 -166695432 - Lx7 LINE L1 -272 7424 4887 6 817 1974 190 56 12 chr1 30500000 30500244 -166695188 - L1_Mur3 LINE L1 -994 4886 4635 1 817 573 28 0 0 chr1 30500244 30500315 -166695117 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 817 1974 190 56 12 chr1 30500315 30500496 -166694936 - L1_Mur3 LINE L1 -1246 4634 4442 1 817 1881 228 46 14 chr1 30500490 30500992 -166694440 - L1_Mur3 LINE L1 -2033 3847 3330 1 817 343 230 159 45 chr1 30502206 30502338 -166693094 + B1F SINE Alu 3 149 0 3 817 202 374 74 35 chr1 30502954 30503184 -166692248 + L4 LINE RTE 199 437 -1592 4 817 1660 270 72 6 chr1 30503996 30504480 -166690952 + MT2A LTR ERVL 2 517 -16 5 817 1290 166 9 0 chr1 30504480 30504703 -166690729 + URR1B DNA MER1_type 1 225 0 6 817 246 316 47 24 chr1 30505281 30505417 -166690015 - MIR SINE MIR -32 236 86 7 817 604 314 65 27 chr1 30505422 30505684 -166689748 - RMER15 LTR ERVL -2 573 302 8 817 1103 277 90 56 chr1 30505804 30506371 -166689061 - RMER15-int LTR ERVL -35 4964 4379 8 817 2053 154 3 3 chr1 30506371 30506709 -166688723 + ORR1A1 LTR MaLR 1 338 -8 9 817 574 263 28 33 chr1 30506722 30506903 -166688529 - RMER15-int LTR ERVL -634 4365 4186 8 817 989 311 34 80 chr1 30506962 30507178 -166688254 + Lx6 LINE L1 7014 7203 -257 1 817 907 89 19 6 chr1 30507178 30507337 -166688095 - L1_Mus3 LINE L1 0 6638 6478 1 817 989 311 34 80 chr1 30507337 30507557 -166687875 + Lx6 LINE L1 7204 7430 -30 1 817 187 316 131 12 chr1 30507881 30508041 -166687391 - MIR SINE MIR -3 259 81 1 817 1177 45 6 6 chr1 30508316 30508473 -166686959 + (TTCTC)n Simple_repeat Simple_repeat 3 159 0 1 817 687 140 22 0 chr1 30508473 30508599 -166686833 + C-rich Low_complexity Low_complexity 15 143 0 1 817 966 116 17 11 chr1 30508599 30508773 -166686659 + (TTCTC)n Simple_repeat Simple_repeat 2 176 0 1 817 572 89 10 0 chr1 30508810 30508911 -166686521 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 817 207 0 0 0 chr1 30508911 30508934 -166686498 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 817 1173 58 11 17 chr1 30509574 30509750 -166685682 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 1 817 401 229 67 22 chr1 30509755 30509889 -166685543 + Lx9 LINE L1 7505 7644 0 1 817 871 295 128 35 chr1 30510764 30511077 -166684355 - MTEa LTR MaLR 0 379 38 2 817 24655 149 32 16 chr1 30511087 30517345 -166678087 - L1_Mus4 LINE L1 -2 6634 356 2 817 298 276 82 59 chr1 30517345 30517480 -166677952 - MTEa LTR MaLR -241 138 1 2 817 21 0 0 0 chr1 30518205 30518226 -166677206 + AT_rich Low_complexity Low_complexity 1 21 0 2 817 214 250 16 62 chr1 30518441 30518505 -166676927 - L3 LINE CR1 -628 3861 3801 2 817 1449 12 0 0 chr1 30519004 30519166 -166676266 + L1Md_T LINE L1 5425 5586 -297 2 817 8420 30 3 0 chr1 30519167 30520158 -166675274 + L1Md_T LINE L1 5588 6581 -1 2 817 1774 94 185 0 chr1 30520850 30521126 -166674306 - ORR1A2 LTR MaLR 0 327 1 2 817 260 265 192 39 chr1 30521278 30521486 -166673946 + L1ME2z LINE L1 6176 6415 -29 2 817 225 0 0 0 chr1 30522247 30522272 -166673160 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 817 504 32 0 0 chr1 30522272 30522333 -166673099 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 817 377 287 88 8 chr1 30523130 30523369 -166672063 + L1M2 LINE L1 2401 2658 -4191 3 817 449 290 129 29 chr1 30523370 30523679 -166671753 + L1_Mur2 LINE L1 4019 4358 -1519 3 817 744 153 23 9 chr1 30523682 30523899 -166671533 + GA-rich Low_complexity Low_complexity 1 219 0 3 817 186 191 0 0 chr1 30523948 30523990 -166671442 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 817 315 236 0 41 chr1 30523992 30524089 -166671343 + L1M2 LINE L1 5102 5194 -1651 3 817 1875 113 89 0 chr1 30524095 30524388 -166671044 - ORR1A2 LTR MaLR -8 319 1 3 817 389 232 103 35 chr1 30524469 30524585 -166670847 + Lx9 LINE L1 7263 7386 -258 3 817 511 119 23 2 chr1 30524559 30524656 -166670776 + L1_Mus3 LINE L1 3522 3624 -2259 3 817 4728 128 5 3 chr1 30524654 30525403 -166670029 + L1_Mus3 LINE L1 4248 4998 -885 3 817 18221 50 0 0 chr1 30525405 30527686 -166667746 + L1Md_F3 LINE L1 3306 5586 -297 3 817 7875 47 4 1 chr1 30527686 30528667 -166666765 + L1Md_F3 LINE L1 5587 6570 -14 3 817 324 0 0 0 chr1 30528674 30528710 -166666722 + (A)n Simple_repeat Simple_repeat 1 36 0 3 817 7131 99 23 1 chr1 30528710 30530316 -166665116 + L1_Mus3 LINE L1 4987 6631 -7 3 817 371 38 19 0 chr1 30530319 30530372 -166665060 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 3 817 496 116 0 21 chr1 30530372 30530468 -166664964 + (CATA)n Simple_repeat Simple_repeat 2 96 0 4 817 1386 14 14 0 chr1 30530544 30530751 -166664681 + (TAGA)n Simple_repeat Simple_repeat 1 210 0 4 817 882 107 76 0 chr1 30531145 30531276 -166664156 + B1_Mus1 SINE Alu 1 141 -7 4 817 342 0 0 0 chr1 30531287 30531325 -166664107 + (CAA)n Simple_repeat Simple_repeat 1 38 0 4 817 336 24 0 0 chr1 30532248 30532289 -166663143 + (A)n Simple_repeat Simple_repeat 1 41 0 4 817 710 301 5 25 chr1 30532534 30532732 -166662700 - B3A SINE B2 -2 196 3 4 817 306 0 0 0 chr1 30532744 30532778 -166662654 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 817 2227 164 47 17 chr1 30532809 30533218 -166662214 + MTC LTR MaLR 1 421 0 4 817 1419 134 13 0 chr1 30534258 30534482 -166660950 + RMER6A LTR ERVK 1 227 -529 4 817 2314 195 37 60 chr1 30534610 30534972 -166660460 + L1VL4 LINE L1 384 736 -5566 4 817 1332 190 7 21 chr1 30534972 30535257 -166660175 + L1Md_T LINE L1 6302 6582 0 5 817 2314 195 37 60 chr1 30535257 30535482 -166659950 + L1VL4 LINE L1 737 958 -5344 4 817 1915 97 0 11 chr1 30535486 30535758 -166659674 - RMER17D2 LTR ERVK -540 269 1 5 817 1187 118 0 0 chr1 30535758 30535936 -166659496 + L1_Mur1 LINE L1 2527 2704 -3182 5 817 8547 140 20 22 chr1 30535938 30537729 -166657703 + Lx2A LINE L1 5176 6976 -32 5 817 379 157 0 0 chr1 30537729 30537799 -166657633 + Lx2A LINE L1 6930 6999 -9 5 817 833 132 39 7 chr1 30537817 30537970 -166657462 + RMER6A LTR ERVK 201 358 -398 4 817 513 0 0 0 chr1 30538880 30538937 -166656495 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 102 1133 291 91 34 chr1 30539280 30539959 -166655473 + L1MA9 LINE L1 4307 5024 -1119 5 818 345 314 102 39 chr1 30539957 30540154 -166655278 + L1MA9 LINE L1 5787 6009 -303 5 818 1952 116 34 16 chr1 30540154 30540477 -166654955 - ORR1A4 LTR MaLR 0 329 1 5 818 345 304 164 32 chr1 30540477 30540725 -166654707 + L1MA9 LINE L1 6010 6290 -1 5 818 376 106 30 0 chr1 30541967 30542033 -166653399 - L1Md_F2 LINE L1 -8 6574 6507 5 818 235 328 0 30 chr1 30542536 30542602 -166652830 + MIRc SINE MIR 93 156 -112 5 818 259 329 0 0 chr1 30542602 30542675 -166652757 - ID4_ SINE ID -1 82 10 6 818 2408 117 6 8 chr1 30542976 30543329 -166652103 + Lx LINE L1 5976 6327 -327 6 818 22 0 0 0 chr1 30543996 30544018 -166651414 + AT_rich Low_complexity Low_complexity 1 22 0 6 818 388 244 18 49 chr1 30545065 30545229 -166650203 - Lx8 LINE L1 0 7473 7315 6 818 398 242 83 8 chr1 30545228 30545349 -166650083 + Lx9 LINE L1 7057 7186 -458 6 818 552 222 0 16 chr1 30547593 30547776 -166647656 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 818 1089 72 7 0 chr1 30548854 30548993 -166646439 + B1_Mus1 SINE Alu 2 141 -7 6 818 210 37 0 0 chr1 30548995 30549022 -166646410 + (A)n Simple_repeat Simple_repeat 1 27 0 6 818 38 22 0 0 chr1 30549222 30549267 -166646165 + AT_rich Low_complexity Low_complexity 1 45 0 6 818 244 243 13 13 chr1 30549558 30549633 -166645799 + L1MB8 LINE L1 5298 5372 -802 6 818 235 309 0 42 chr1 30549633 30549704 -166645728 + MER21B LTR ERV1 1 68 -795 7 818 476 388 66 4 chr1 30549790 30550049 -166645383 + MER21B LTR ERV1 215 489 -374 7 818 501 317 129 23 chr1 30550311 30550777 -166644655 + L1MB8 LINE L1 5367 5887 -287 6 818 309 89 0 0 chr1 30550950 30550995 -166644437 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 818 603 40 0 0 chr1 30551000 30551074 -166644358 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 818 453 304 43 65 chr1 30551714 30551900 -166643532 + B3A SINE B2 2 183 -15 7 818 230 286 20 0 chr1 30551951 30552000 -166643432 - ID4 SINE ID -3 80 31 7 818 653 270 40 0 chr1 30552040 30552192 -166643240 - MER20 DNA MER1_type -43 176 19 7 818 3380 140 7 13 chr1 30552364 30552901 -166642531 + Lx2A1 LINE L1 6428 6961 -47 7 818 21 36 0 0 chr1 30552919 30552947 -166642485 + AT_rich Low_complexity Low_complexity 1 28 0 7 818 955 84 14 0 chr1 30553590 30553733 -166641699 + (CA)n Simple_repeat Simple_repeat 2 146 0 7 818 275 337 134 38 chr1 30554346 30554693 -166640739 - MLT1D LTR MaLR -44 423 34 7 818 357 82 0 0 chr1 30555080 30555129 -166640303 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 818 1017 338 29 9 chr1 30555755 30556095 -166639337 - MTE2b LTR MaLR -8 371 25 8 818 207 0 0 0 chr1 30557335 30557358 -166638074 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 818 564 15 0 0 chr1 30557922 30557987 -166637445 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 818 1009 250 14 0 chr1 30558558 30558766 -166636666 - B3 SINE B2 -5 211 1 8 818 387 0 0 0 chr1 30560641 30560684 -166634748 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 818 225 300 22 11 chr1 30560687 30560778 -166634654 + GA-rich Low_complexity Low_complexity 2 93 0 8 818 29 28 0 0 chr1 30561739 30561775 -166633657 + AT_rich Low_complexity Low_complexity 1 36 0 8 818 510 195 23 14 chr1 30561806 30562019 -166633413 + (TAGA)n Simple_repeat Simple_repeat 1 214 0 8 818 237 330 109 11 chr1 30562477 30562569 -166632863 + B4A SINE B4 1 101 -191 8 818 488 258 174 11 chr1 30562574 30562743 -166632689 + B3 SINE B2 28 214 -2 9 818 285 29 0 0 chr1 30562948 30562982 -166632450 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 818 546 16 0 0 chr1 30562982 30563044 -166632388 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 818 195 42 0 0 chr1 30563138 30563162 -166632270 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 9 818 603 281 21 21 chr1 30563681 30563870 -166631562 - B3A SINE B2 -5 193 5 9 818 4468 163 20 2 chr1 30563925 30564374 -166631058 + Lx4B LINE L1 5379 5841 -1217 9 818 7769 35 14 1 chr1 30564374 30565316 -166630116 + L1Md_F3 LINE L1 5631 6584 0 9 818 4468 197 94 91 chr1 30565316 30565459 -166629973 + Lx4B LINE L1 5842 5918 -1140 9 818 453 116 0 0 chr1 30565459 30565528 -166629904 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 818 4468 197 94 91 chr1 30565528 30566595 -166628837 + Lx4B LINE L1 5919 7054 -4 9 818 28 0 0 0 chr1 30566595 30566623 -166628809 + AT_rich Low_complexity Low_complexity 1 28 0 9 818 244 392 14 27 chr1 30567261 30567408 -166628024 - MIRb SINE MIR -47 221 77 9 818 1512 273 72 27 chr1 30568029 30568858 -166626574 - Lx9 LINE L1 -382 7262 6236 1 818 299 305 37 8 chr1 30568891 30569010 -166626422 + Lx9 LINE L1 7311 7420 -224 1 818 1064 290 119 23 chr1 30569392 30569787 -166625645 - MT2A LTR ERVL -1 532 100 1 818 279 271 113 48 chr1 30569750 30569874 -166625558 - MTE2a LTR MaLR -243 136 5 1 818 38 68 0 0 chr1 30570998 30571071 -166624361 + AT_rich Low_complexity Low_complexity 1 73 0 1 818 190 291 234 12 chr1 30571679 30571846 -166623586 - MIRc SINE MIR -26 242 39 1 818 26 0 0 0 chr1 30572026 30572052 -166623380 + AT_rich Low_complexity Low_complexity 1 26 0 1 818 2653 122 92 2 chr1 30572127 30572234 -166623198 - Lx2 LINE L1 -7 6990 6882 1 818 219 69 0 0 chr1 30572234 30572263 -166623169 + (CTCA)n Simple_repeat Simple_repeat 2 30 0 1 818 2653 122 92 2 chr1 30572263 30572589 -166622843 - Lx2 LINE L1 -116 6881 6520 1 818 242 299 15 0 chr1 30573061 30573128 -166622304 + Tigger5 DNA MER2_type 180 247 -2159 1 818 354 364 23 0 chr1 30573578 30573707 -166621725 + ORR1E LTR MaLR 3 134 -225 1 818 444 244 34 34 chr1 30573845 30573964 -166621468 + B1F SINE Alu 26 144 -5 1 818 287 330 33 0 chr1 30575696 30575787 -166619645 - MLT1A1 LTR MaLR -266 142 49 1 818 5093 213 44 39 chr1 30576763 30578040 -166617392 + RMER12 LTR ERVK 1 1813 -35 1 818 553 353 46 21 chr1 30578078 30578497 -166616935 - MLT1C LTR MaLR 0 467 9 1 818 599 153 113 78 chr1 30579794 30579936 -166615496 + B1_Mur3 SINE Alu 3 149 0 1 818 1206 181 17 22 chr1 30580515 30580747 -166614685 + MTC LTR MaLR 1 231 -190 1 818 4635 8 0 0 chr1 30581020 30581532 -166613900 - L1Md_T LINE L1 0 6582 6071 1 818 750 78 0 0 chr1 30581551 30581653 -166613779 + (GAAAA)n Simple_repeat Simple_repeat 1 102 0 1 818 254 305 42 10 chr1 30581737 30581833 -166613599 + MLT1E1A LTR MaLR 573 671 -9 1 818 414 0 0 0 chr1 30582609 30582655 -166612777 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 818 642 320 29 93 chr1 30582805 30583115 -166612317 + B4A SINE B4 3 292 0 1 818 244 298 32 16 chr1 30583115 30583216 -166612216 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 818 2445 112 32 136 chr1 30583216 30583754 -166611678 + RLTR45 LTR ERVK 1 482 0 1 818 244 298 32 16 chr1 30583754 30583778 -166611654 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 818 588 33 11 21 chr1 30584357 30584450 -166610982 + L1Md_F2 LINE L1 6491 6582 0 1 818 703 278 168 15 chr1 30585274 30585593 -166609839 - MTD LTR MaLR -12 395 19 1 818 585 293 106 0 chr1 30585617 30585805 -166609627 - MER58A DNA MER1_type -3 221 14 1 818 240 111 0 0 chr1 30585918 30585954 -166609478 + (A)n Simple_repeat Simple_repeat 1 36 0 1 818 4186 54 0 26 chr1 30587656 30588189 -166607243 + MURVY-LTR LTR ERV1 1 519 0 1 818 440 35 17 0 chr1 30588692 30588750 -166606682 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 818 452 263 85 25 chr1 30588859 30589058 -166606374 - LTR37B LTR ERV1 0 468 258 1 818 337 318 155 7 chr1 30589116 30589407 -166606025 + L1M3e LINE L1 42 375 -6655 1 818 640 136 468 0 chr1 30589709 30589863 -166605569 + URR1A DNA MER1_type 1 226 0 1 818 399 228 0 73 chr1 30590017 30590140 -166605292 + Lx7 LINE L1 7355 7468 -228 1 818 3306 40 2 2 chr1 30590347 30590743 -166604689 + MTA_Mm LTR MaLR 1 396 0 1 818 477 327 15 0 chr1 30590759 30590904 -166604528 + B1F2 SINE Alu 3 149 0 1 818 282 132 0 0 chr1 30590943 30590996 -166604436 + L1MA6 LINE L1 5388 5440 -857 1 818 271 147 27 68 chr1 30591058 30591131 -166604301 + RMER15 LTR ERVL 391 460 -115 1 818 684 67 0 0 chr1 30591132 30591222 -166604210 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 818 1376 292 53 62 chr1 30591222 30592092 -166603340 + L1MA6 LINE L1 5438 6299 -1 1 818 899 185 128 20 chr1 30592141 30592345 -166603087 + URR1A DNA MER1_type 1 226 0 1 818 259 328 138 64 chr1 30592696 30592914 -166602518 - MER34A1 LTR ERV1 -297 290 57 1 818 5342 23 0 0 chr1 30595493 30596106 -166599326 + L1Md_A LINE L1 5970 6582 0 1 818 625 307 149 20 chr1 30596882 30597131 -166598301 - ORR1E LTR MaLR -10 349 69 1 818 1871 221 60 41 chr1 30597203 30597689 -166597743 + RLTR20B3 LTR ERVK 21 515 -62 1 818 297 230 7 169 chr1 30598148 30598284 -166597148 + LTR37B LTR ERV1 186 299 -169 1 818 362 369 44 26 chr1 30598660 30598909 -166596523 + MER45C DNA Tip100 59 391 -562 1 818 30993 75 3 4 chr1 30599087 30604246 -166591186 + L1Md_Gf LINE L1 341 5589 -297 1 818 7988 51 2 2 chr1 30604246 30605242 -166590190 + L1Md_F2 LINE L1 5587 6582 0 1 818 2721 178 124 40 chr1 30605463 30606424 -166589008 + RLTR13D1 LTR ERVK 1 1023 0 1 818 239 352 105 7 chr1 30608000 30608143 -166587289 + MIRc SINE MIR 72 228 -40 1 818 293 374 0 14 chr1 30608608 30608749 -166586683 - MIR SINE MIR -40 222 84 1 818 2290 159 65 10 chr1 30609850 30610249 -166585183 - MTC LTR MaLR 0 421 1 1 818 472 192 8 39 chr1 30610249 30610379 -166585053 - Lx9 LINE L1 -13 7631 7506 1 818 751 244 56 5 chr1 30610405 30610603 -166584829 + Lx9 LINE L1 6592 6799 -845 1 818 862 45 0 49 chr1 30612184 30612326 -166583106 - Lx3_Mus LINE L1 -810 6199 6065 1 818 2016 104 30 0 chr1 30612888 30613186 -166582246 - Lx2 LINE L1 0 6997 6691 1 818 474 204 0 39 chr1 30613223 30613325 -166582107 + L1_Rod LINE L1 5619 5716 -131 1 818 526 62 138 0 chr1 30613325 30613405 -166582027 + B1_Mm SINE Alu 1 91 -56 1 818 3339 235 37 2 chr1 30613405 30614210 -166581222 + Lx9 LINE L1 6407 7239 -405 1 818 268 216 67 33 chr1 30614216 30614336 -166581096 + Lx9 LINE L1 7520 7643 -1 1 818 394 53 0 51 chr1 30614741 30614800 -166580632 + B1_Mus2 SINE Alu 92 147 0 1 818 195 39 0 0 chr1 30614800 30614821 -166580611 + (A)n Simple_repeat Simple_repeat 1 21 0 1 818 1245 225 206 84 chr1 30614821 30615176 -166580256 - RMER6D LTR ERVK -1 719 354 1 818 525 76 0 0 chr1 30615176 30615255 -166580177 + (CAACT)n Simple_repeat Simple_repeat 2 80 0 1 818 1245 225 206 84 chr1 30615255 30615540 -166579892 - RMER6D LTR ERVK -367 353 1 1 818 647 311 79 26 chr1 30615557 30615900 -166579532 - Lx9 LINE L1 -757 6887 6527 1 818 268 57 18 54 chr1 30616100 30616156 -166579276 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 1 818 403 284 0 27 chr1 30616248 30616360 -166579072 + MLT1A1 LTR MaLR 1 109 -299 1 818 297 0 0 0 chr1 30617290 30617323 -166578109 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 818 275 325 79 8 chr1 30617890 30618017 -166577415 + MLT1A1 LTR MaLR 248 383 -25 1 818 1269 264 25 99 chr1 30619061 30619465 -166575967 + MTEa LTR MaLR 6 379 0 1 818 332 327 91 14 chr1 30619564 30619840 -166575592 + L2 LINE L2 2515 2811 -608 1 818 463 43 0 28 chr1 30620610 30620682 -166574750 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 1 818 386 256 127 8 chr1 30622201 30622327 -166573105 - B1F1 SINE Alu -8 141 1 1 818 436 277 118 49 chr1 30622706 30622850 -166572582 + ID_B1 SINE B4 71 224 0 1 818 3984 133 42 17 chr1 30623388 30624038 -166571394 - Lx4A LINE L1 -1 7057 6392 1 818 502 274 122 14 chr1 30624187 30624335 -166571097 - RSINE1 SINE B4 0 165 2 1 818 548 321 92 6 chr1 30626530 30626693 -166568739 + B4A SINE B4 5 181 -111 1 818 1764 275 85 28 chr1 30626748 30627689 -166567743 + Lx5 LINE L1 6174 7417 -43 1 818 1659 294 69 19 chr1 30627865 30628530 -166566902 - Lx8 LINE L1 -519 6954 6257 1 818 389 141 14 0 chr1 30628597 30628668 -166566764 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 818 591 341 88 52 chr1 30628684 30629161 -166566271 + Lx7 LINE L1 6949 7443 -30 1 818 258 156 0 0 chr1 30629466 30629511 -166565921 + A-rich Low_complexity Low_complexity 1 45 0 1 818 2229 108 9 18 chr1 30630055 30630385 -166565047 + ORR1A2 LTR MaLR 1 327 0 1 818 855 273 5 21 chr1 30630488 30630679 -166564753 + B3 SINE B2 4 191 -25 1 818 2628 37 97 0 chr1 30630711 30631062 -166564370 + RLTR10 LTR ERVK 1 385 -5 1 818 4487 53 175 121 chr1 30631079 30631982 -166563450 + RLTR10-int LTR ERVK 43 994 -993 1 818 451 301 37 37 chr1 30632120 30632428 -166563004 + RLTR10-int LTR ERVK 1316 1594 -5987 1 818 7945 31 1 12 chr1 30632508 30633513 -166561919 + RLTR10-int LTR ERVK 990 1983 -4 1 818 2919 49 2 98 chr1 30633517 30633946 -166561486 + RLTR10 LTR ERVK 1 388 -2 1 818 270 207 195 0 chr1 30634078 30634169 -166561263 - MLT1C LTR MaLR -25 442 288 1 818 438 286 78 78 chr1 30634445 30634612 -166560820 + B4 SINE B4 8 174 -118 1 818 204 217 0 0 chr1 30634684 30634730 -166560702 + CT-rich Low_complexity Low_complexity 3 48 0 1 818 378 0 0 0 chr1 30636568 30636610 -166558822 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 818 319 326 11 0 chr1 30637688 30637780 -166557652 - L2b LINE L2 -6 3369 3277 1 818 283 298 93 31 chr1 30638848 30639018 -166556414 - MIRb SINE MIR -34 234 47 1 818 21 0 0 0 chr1 30639124 30639145 -166556287 + AT_rich Low_complexity Low_complexity 1 21 0 1 818 1638 42 0 0 chr1 30641068 30641261 -166554171 - B2_Mm1t SINE B2 0 193 1 1 818 316 280 57 41 chr1 30642254 30642377 -166553055 - MIRc SINE MIR -124 144 20 1 818 350 289 10 0 chr1 30642696 30642793 -166552639 - MLT1B LTR MaLR -1 389 292 1 818 883 248 20 0 chr1 30643011 30643213 -166552219 + B3 SINE B2 1 206 -10 1 818 1286 77 55 0 chr1 30643242 30643423 -166552009 + B2_Mm2 SINE B2 2 192 -3 1 818 5005 122 114 9 chr1 30644625 30645483 -166549949 + RMER17B LTR ERVK 1 948 -10 1 818 336 48 0 0 chr1 30646623 30646665 -166548767 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 818 423 98 0 0 chr1 30648653 30648714 -166546718 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 818 23 0 0 0 chr1 30649084 30649107 -166546325 + AT_rich Low_complexity Low_complexity 1 23 0 2 818 241 260 0 0 chr1 30649111 30649184 -166546248 + L1MB8 LINE L1 5193 5265 -881 2 818 360 0 0 0 chr1 30649185 30649225 -166546207 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 818 189 107 0 0 chr1 30649225 30649253 -166546179 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 2 818 625 323 68 47 chr1 30649346 30649380 -166546052 + ORR1E LTR MaLR 69 102 -257 2 818 2352 95 6 12 chr1 30649380 30649709 -166545723 - ORR1A2 LTR MaLR 0 327 1 2 818 625 323 68 47 chr1 30649709 30649908 -166545524 + ORR1E LTR MaLR 103 307 -52 2 818 438 226 0 0 chr1 30649912 30650018 -166545414 + CT-rich Low_complexity Low_complexity 2 107 0 2 818 269 231 0 15 chr1 30650020 30650086 -166545346 + ORR1E LTR MaLR 315 379 0 2 818 238 158 17 34 chr1 30650095 30650154 -166545278 + L1M4 LINE L1 5848 5905 -273 2 818 566 311 0 52 chr1 30650154 30650327 -166545105 + RSINE1 SINE B4 2 165 0 2 818 204 182 0 0 chr1 30650327 30650371 -166545061 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 818 355 278 78 30 chr1 30650389 30650556 -166544876 + L1MB8 LINE L1 5894 6068 -110 2 818 657 272 115 28 chr1 30651068 30651355 -166544077 + MER33 DNA MER1_type 1 312 -12 2 818 209 368 94 0 chr1 30651726 30651843 -166543589 + L2c LINE L2 3251 3378 -9 2 818 237 65 0 0 chr1 30652641 30652672 -166542760 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 818 432 0 0 0 chr1 30652941 30652989 -166542443 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 818 667 244 50 60 chr1 30653020 30653238 -166542194 + B3 SINE B2 1 216 0 2 818 339 17 0 79 chr1 30654285 30654348 -166541084 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 2 818 1497 84 75 4 chr1 30654370 30654598 -166540834 - L1_Mus3 LINE L1 -2 6636 6393 2 818 196 345 119 20 chr1 30654660 30654811 -166540621 + MER5B DNA MER1_type 6 171 -7 2 818 1047 115 0 0 chr1 30654849 30654988 -166540444 + B1_Mus1 SINE Alu 4 142 -6 2 818 602 135 10 0 chr1 30654988 30655092 -166540340 + (GA)n Simple_repeat Simple_repeat 1 105 0 2 818 5098 65 0 9 chr1 30655146 30655800 -166539632 + L1Md_F2 LINE L1 5920 6567 -15 2 818 1003 80 7 0 chr1 30656731 30656868 -166538564 + L1_Mus1 LINE L1 6416 6553 -14 2 818 477 0 0 0 chr1 30656881 30656934 -166538498 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 2 818 378 0 0 0 chr1 30657123 30657165 -166538267 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 818 459 0 0 0 chr1 30657165 30657215 -166538217 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 818 373 249 47 25 chr1 30657216 30657314 -166538118 - B1F SINE Alu -33 94 1 2 818 250 266 25 12 chr1 30658366 30658446 -166536986 - L1MA5 LINE L1 -364 5936 5856 2 818 214 247 26 0 chr1 30659332 30659409 -166536023 + L2 LINE L2 1113 1191 -2228 2 818 22 35 0 0 chr1 30659866 30659895 -166535537 + AT_rich Low_complexity Low_complexity 1 29 0 2 818 296 268 55 28 chr1 30660063 30660157 -166535275 - PB1D10 SINE Alu -21 127 36 2 818 2913 154 39 0 chr1 30660217 30660756 -166534676 + MusHAL1 LINE L1 18 577 -2777 2 818 180 0 0 0 chr1 30660757 30660777 -166534655 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 818 29069 79 3 10 chr1 30660783 30665783 -166529649 - L1Md_F2 LINE L1 -10 6572 1609 2 818 6174 144 13 14 chr1 30665783 30667473 -166527959 + MuRRS4-int LTR ERV1 2489 4271 -792 2 818 686 165 0 0 chr1 30667464 30667591 -166527841 + MuRRS4-int LTR ERV1 4788 4914 -149 2 818 207 0 0 0 chr1 30667593 30667616 -166527816 + (T)n Simple_repeat Simple_repeat 1 23 0 2 818 16070 15 0 1 chr1 30667618 30670283 -166525149 - L1Md_T LINE L1 -1 6581 3921 2 102 2970 118 42 19 chr1 30670384 30670858 -166524574 + LTRIS2 LTR ERV1 1 485 -79 2 819 208 70 23 23 chr1 30670861 30670905 -166524527 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 819 8605 134 9 10 chr1 30670909 30673015 -166522417 - L1VL4 LINE L1 -1284 2275 174 2 819 316 330 51 37 chr1 30673263 30673282 -166522150 - L1M4b LINE L1 -5803 1531 1519 2 819 4394 20 0 0 chr1 30673282 30673775 -166521657 + MT2_Mm LTR ERVL 1 493 0 2 819 316 330 51 37 chr1 30673775 30673969 -166521463 - L1M4b LINE L1 -5816 1518 1315 2 819 213 314 0 0 chr1 30674977 30675028 -166520404 - L2a LINE L2 0 3426 3376 2 819 528 93 0 0 chr1 30675044 30675119 -166520313 + (CGTG)n Simple_repeat Simple_repeat 1 75 0 2 819 2375 249 83 12 chr1 30676428 30677117 -166518315 - Lx6 LINE L1 0 7696 6693 2 819 3845 51 0 0 chr1 30677158 30677648 -166517784 - L1Md_F2 LINE L1 -271 6311 5822 2 819 6474 55 1 1 chr1 30677643 30678494 -166516938 + L1Md_F2 LINE L1 4953 5803 -80 2 819 262 321 81 18 chr1 30678518 30678629 -166516803 + PB1D7 SINE Alu 3 120 0 2 819 1058 160 118 0 chr1 30678662 30678874 -166516558 + Lx2 LINE L1 6761 6997 0 2 819 386 357 104 75 chr1 30679326 30679768 -166515664 - MLT1D LTR MaLR -8 497 43 2 819 693 245 136 25 chr1 30679892 30680135 -166515297 + L1MC1 LINE L1 6062 6331 -2 2 819 1029 289 15 6 chr1 30680312 30680653 -166514779 + Lx6 LINE L1 7085 7428 -32 2 819 218 136 0 22 chr1 30680662 30680707 -166514725 + (CATA)n Simple_repeat Simple_repeat 3 46 0 2 819 2016 191 86 0 chr1 30681130 30681492 -166513940 - MTC LTR MaLR 0 421 29 2 819 216 0 0 0 chr1 30682450 30682474 -166512958 + (T)n Simple_repeat Simple_repeat 1 24 0 2 819 426 304 7 1 chr1 30683385 30683556 -166511876 + L1_Mur3 LINE L1 5042 5223 -920 2 819 4630 70 52 6 chr1 30683678 30684394 -166511038 + MusHAL1 LINE L1 1336 2084 -628 2 819 2954 179 33 47 chr1 30684457 30685071 -166510361 - RLTR1D LTR ERV1 0 605 1 2 819 285 51 0 0 chr1 30685089 30685128 -166510304 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 819 1094 257 48 38 chr1 30685128 30685443 -166509989 - MTEa LTR MaLR -61 318 1 2 819 228 351 45 7 chr1 30685510 30685665 -166509767 - L1MB2 LINE L1 -170 6001 5841 2 819 201 171 0 0 chr1 30685674 30685709 -166509723 + T-rich Low_complexity Low_complexity 1 35 0 2 819 777 176 14 51 chr1 30685737 30685875 -166509557 - B1_Mur4 SINE Alu -9 141 9 2 819 300 265 73 0 chr1 30685881 30685949 -166509483 - ID_B1 SINE B4 -11 213 141 2 819 22 56 0 0 chr1 30685975 30686011 -166509421 + AT_rich Low_complexity Low_complexity 1 36 0 2 819 416 314 6 43 chr1 30686019 30686182 -166509250 - RSINE1 SINE B4 -6 159 3 2 819 665 272 87 32 chr1 30686183 30686460 -166508972 - L1MB2 LINE L1 -557 5614 5323 2 819 276 191 0 0 chr1 30686461 30686508 -166508924 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 819 363 263 161 0 chr1 30686512 30686630 -166508802 - B4 SINE B4 -73 219 83 2 819 426 259 14 0 chr1 30686654 30686793 -166508639 - L1MB2 LINE L1 -866 5280 5140 2 819 27 29 0 0 chr1 30686793 30686827 -166508605 + AT_rich Low_complexity Low_complexity 1 34 0 2 819 1039 299 55 43 chr1 30686881 30686979 -166508453 + Lx8 LINE L1 5328 5418 -429 2 819 564 29 0 0 chr1 30686979 30687049 -166508383 + (TAA)n Simple_repeat Simple_repeat 3 72 0 2 819 1548 320 45 41 chr1 30687049 30688135 -166507297 + Lx8 LINE L1 5419 6545 -928 2 819 471 239 15 0 chr1 30688145 30688275 -166507157 - L1M2 LINE L1 -837 5454 5323 2 819 447 113 0 0 chr1 30688276 30688347 -166507085 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 819 1700 294 118 16 chr1 30688351 30689100 -166506332 + Lx8 LINE L1 6556 7380 -93 2 819 353 260 14 0 chr1 30689530 30689603 -166505829 - ID4 SINE ID -9 74 1 2 819 263 253 58 0 chr1 30690489 30690576 -166504856 - L1ME3 LINE L1 -5 6157 6066 2 819 210 233 31 62 chr1 30691802 30691866 -166503566 - B4 SINE B4 -207 85 24 2 819 211 40 0 0 chr1 30692706 30692731 -166502701 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 819 514 208 13 0 chr1 30692731 30692890 -166502542 + (TA)n Simple_repeat Simple_repeat 1 161 0 2 819 203 179 0 0 chr1 30692955 30692994 -166502438 + A-rich Low_complexity Low_complexity 1 39 0 2 819 234 304 10 71 chr1 30694258 30694357 -166501075 + B4 SINE B4 1 93 -199 2 819 280 336 33 25 chr1 30694654 30694776 -166500656 - LTR41 LTR ERVL -607 161 39 2 819 324 293 13 13 chr1 30694810 30694886 -166500546 + RSINE1 SINE B4 90 165 0 2 819 360 0 0 0 chr1 30695043 30695083 -166500349 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 819 197 167 0 40 chr1 30696249 30696299 -166499133 + GA-rich Low_complexity Low_complexity 3 50 0 2 819 417 318 31 31 chr1 30697567 30697726 -166497706 - RSINE1 SINE B4 -4 161 3 2 819 25 0 0 0 chr1 30697738 30697763 -166497669 + AT_rich Low_complexity Low_complexity 1 25 0 2 819 576 251 166 23 chr1 30698092 30698267 -166497165 + B3 SINE B2 11 210 -6 2 819 192 77 0 0 chr1 30698288 30698314 -166497118 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2 819 2043 94 55 61 chr1 30699321 30699650 -166495782 - ORR1A2 LTR MaLR 0 327 1 2 819 964 219 40 67 chr1 30699919 30700217 -166495215 + Lx5 LINE L1 6758 7047 -3 2 819 2372 105 31 11 chr1 30700248 30700606 -166494826 + Lx LINE L1 6290 6654 0 2 819 7656 152 21 7 chr1 30700898 30703084 -166492348 + Lx4B LINE L1 4835 7058 0 2 819 1442 219 71 0 chr1 30703617 30704010 -166491422 - Lx9 LINE L1 0 7644 7224 2 819 5507 57 13 4 chr1 30704211 30704912 -166490520 - L1Md_F2 LINE L1 -12 6570 5864 2 819 25 65 0 0 chr1 30705104 30705150 -166490282 + AT_rich Low_complexity Low_complexity 1 46 0 2 819 23 0 0 0 chr1 30705290 30705313 -166490119 + AT_rich Low_complexity Low_complexity 1 23 0 2 819 290 274 80 77 chr1 30705364 30705639 -166489793 - ORR1D2 LTR MaLR 0 379 92 2 819 247 345 131 33 chr1 30705626 30705779 -166489653 - MLT1A1 LTR MaLR -235 173 6 2 819 253 338 95 0 chr1 30705898 30705972 -166489460 + ID4_ SINE ID 1 81 -2 2 819 204 91 0 0 chr1 30706283 30706299 -166489133 + (TA)n Simple_repeat Simple_repeat 2 17 0 2 819 387 0 0 0 chr1 30706299 30706342 -166489090 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 819 204 91 0 0 chr1 30706342 30706358 -166489074 + (TA)n Simple_repeat Simple_repeat 2 17 0 2 819 500 335 12 47 chr1 30707365 30707537 -166487895 + B3 SINE B2 9 174 -42 3 819 528 205 70 32 chr1 30707800 30707956 -166487476 + Lx7 LINE L1 7199 7360 -336 3 819 22 56 0 0 chr1 30707963 30707999 -166487433 + AT_rich Low_complexity Low_complexity 1 36 0 3 819 423 0 0 0 chr1 30708076 30708123 -166487309 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 819 360 0 0 0 chr1 30708265 30708305 -166487127 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 819 537 58 0 0 chr1 30708327 30708396 -166487036 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 3 819 323 171 61 0 chr1 30708409 30708491 -166486941 + Lx7 LINE L1 7610 7696 0 3 819 2215 36 4 7 chr1 30709200 30709477 -166485955 + L1Md_A LINE L1 6307 6582 0 3 819 573 125 234 0 chr1 30709487 30709615 -166485817 + Lx3B LINE L1 6813 6970 -3 3 819 245 29 0 29 chr1 30709619 30709654 -166485778 + (TAA)n Simple_repeat Simple_repeat 1 34 0 3 819 301 276 265 32 chr1 30710032 30710241 -166485191 - MLT1A0 LTR MaLR -33 332 75 3 819 402 145 13 0 chr1 30710283 30710359 -166485073 + Lx3B LINE L1 6894 6970 -3 3 819 209 83 0 27 chr1 30710363 30710400 -166485032 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 819 375 236 11 11 chr1 30710728 30710818 -166484614 + BC1_Mm scRNA scRNA 18 107 -45 3 819 1684 280 45 17 chr1 30710867 30711456 -166483976 - Lx6 LINE L1 -35 7425 6478 3 819 2227 212 57 11 chr1 30711484 30712115 -166483317 - Lx6 LINE L1 -673 6377 5697 3 819 1065 54 7 0 chr1 30712130 30712278 -166483154 - L1Md_A LINE L1 -2 6580 6432 3 819 232 267 0 16 chr1 30714867 30714928 -166480504 + (TATG)n Simple_repeat Simple_repeat 4 63 0 3 819 2242 94 25 28 chr1 30715638 30715965 -166479467 - Lx2 LINE L1 -1 6996 6671 3 819 946 228 74 25 chr1 30717138 30717381 -166478051 + MTD LTR MaLR 38 292 -127 3 819 36304 29 0 0 chr1 30717414 30723900 -166471532 - L1Md_T LINE L1 0 6585 42 3 819 6438 64 4 55 chr1 30723999 30724681 -166470751 + L1Md_A LINE L1 462 1145 -5579 3 819 2629 93 159 17 chr1 30724681 30725097 -166470335 + IAPLTR2_Mm LTR ERVK 1 475 0 3 819 34735 51 1 92 chr1 30725097 30726911 -166468521 + L1Md_A LINE L1 1146 2910 -2973 3 819 2113 0 0 0 chr1 30726911 30727135 -166468297 + L1Md_T LINE L1 6359 6582 0 3 819 34735 50 1 94 chr1 30727135 30730544 -166464888 + L1Md_A LINE L1 2911 5845 -38 3 819 4225 64 10 2 chr1 30730544 30731057 -166464375 + L1Md_F2 LINE L1 6064 6580 -2 3 819 2132 175 45 24 chr1 30731370 30731690 -166463742 - Lx LINE L1 -159 6495 6164 3 819 3684 13 8 0 chr1 30731690 30732083 -166463349 - MTA_Mm LTR MaLR 0 396 1 3 819 10107 18 2 3 chr1 30732083 30733182 -166462250 - MTA_Mm-int LTR MaLR 0 1098 1 3 819 3684 13 8 0 chr1 30733182 30733575 -166461857 - MTA_Mm LTR MaLR 0 396 1 3 819 2132 175 45 24 chr1 30733575 30733673 -166461759 - Lx LINE L1 -491 6163 6068 3 819 459 0 0 0 chr1 30734242 30734293 -166461139 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 819 22 80 0 0 chr1 30734601 30734651 -166460781 + AT_rich Low_complexity Low_complexity 1 50 0 3 819 1010 229 29 46 chr1 30734660 30735008 -166460424 + RLTR15 LTR ERVK 1 342 -17 3 819 4723 210 51 16 chr1 30735118 30736114 -166459318 - Lx7 LINE L1 -280 7416 6386 3 819 1259 68 0 0 chr1 30737127 30737273 -166458159 - B1_Mus1 SINE Alu 0 148 3 3 819 424 149 21 0 chr1 30737347 30737441 -166457991 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 819 346 301 98 55 chr1 30737515 30737718 -166457714 - B4A SINE B4 -75 217 2 3 819 208 125 0 48 chr1 30739276 30739318 -166456114 + (TTATA)n Simple_repeat Simple_repeat 4 43 0 3 819 2509 69 25 19 chr1 30739461 30739786 -166455646 - ORR1A2 LTR MaLR 0 327 1 3 819 243 170 0 0 chr1 30739837 30739884 -166455548 + A-rich Low_complexity Low_complexity 3 49 0 3 819 459 259 0 57 chr1 30739884 30740007 -166455425 - MTEa-int LTR MaLR -1464 116 1 3 819 841 279 102 88 chr1 30740007 30740353 -166455079 - MTEa LTR MaLR 0 379 28 3 819 3073 70 47 7 chr1 30740353 30740758 -166454674 - BGLII LTR ERVK 0 421 1 3 819 841 279 102 88 chr1 30740758 30740785 -166454647 - MTEa LTR MaLR -352 27 1 3 819 576 319 68 11 chr1 30741120 30741386 -166454046 - L1MB7 LINE L1 -90 6094 5814 3 819 549 311 33 0 chr1 30741374 30741586 -166453846 + L1MB7 LINE L1 5528 5746 -438 3 819 1006 258 84 22 chr1 30741603 30741971 -166453461 - L1M3 LINE L1 -2230 3910 3520 3 819 1039 92 0 14 chr1 30743501 30743645 -166451787 + B1_Mus1 SINE Alu 7 148 0 3 819 4262 153 29 34 chr1 30743745 30744568 -166450864 + L1Md_A LINE L1 394 1212 -5512 3 819 3269 30 179 0 chr1 30744570 30744973 -166450459 - IAPLTR2_Mm LTR ERVK 0 475 1 3 819 5755 67 12 19 chr1 30744975 30745724 -166449708 - IAPEz-int LTR ERVK -2 6479 5736 3 819 2243 68 0 0 chr1 30745723 30746001 -166449431 - IAPEz-int LTR ERVK -4845 1636 1359 3 819 3582 70 1 16 chr1 30746001 30746579 -166448853 - IAPEz-int LTR ERVK -5819 662 168 3 819 239 321 0 0 chr1 30746579 30746632 -166448800 - RLTR27 LTR ERVK -34 275 223 3 819 1015 132 25 81 chr1 30746632 30746830 -166448602 - IAPEz-int LTR ERVK -6286 195 9 3 819 3245 35 179 0 chr1 30746831 30747234 -166448198 - IAPLTR2_Mm LTR ERVK 0 475 1 3 819 29960 83 8 60 chr1 30747234 30752290 -166443142 + L1Md_F2 LINE L1 1210 5989 -593 3 819 2754 34 3 18 chr1 30752296 30752553 -166442879 + L1Md_F2 LINE L1 6262 6518 -66 3 819 3417 29 39 0 chr1 30752553 30752934 -166442498 + MTA_Mm LTR MaLR 1 396 0 3 819 2754 34 3 18 chr1 30752934 30753002 -166442430 + L1Md_F2 LINE L1 6519 6582 -2 3 819 961 217 60 15 chr1 30753266 30753467 -166441965 + B3 SINE B2 1 210 -6 3 819 260 312 32 0 chr1 30753879 30753972 -166441460 - L2a LINE L2 -42 3384 3289 3 819 484 366 66 18 chr1 30754257 30754543 -166440889 - MER74C LTR ERVL -158 302 3 3 819 684 93 0 0 chr1 30754787 30754884 -166440548 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 3 819 628 260 87 43 chr1 30754887 30755233 -166440199 + Charlie4a DNA MER1_type 130 490 -18 3 819 217 357 0 0 chr1 30755234 30755304 -166440128 + (CACG)n Simple_repeat Simple_repeat 4 73 0 3 819 468 0 0 0 chr1 30755948 30756000 -166439432 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 819 933 242 32 0 chr1 30756032 30756218 -166439214 + B3 SINE B2 15 206 -10 3 819 200 86 29 0 chr1 30756508 30756543 -166438889 + (TTATA)n Simple_repeat Simple_repeat 4 39 0 3 819 242 347 53 0 chr1 30756557 30756632 -166438800 + ORR1E LTR MaLR 226 304 -55 3 819 241 200 30 40 chr1 30756954 30757053 -166438379 + (TTATA)n Simple_repeat Simple_repeat 3 100 0 3 819 483 18 0 0 chr1 30757311 30757367 -166438065 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 819 1208 68 0 7 chr1 30758504 30758651 -166436781 - B1_Mus2 SINE Alu -1 146 1 3 819 17900 52 0 1 chr1 30759103 30761968 -166433464 - L1Md_F2 LINE L1 -12 6570 3708 3 819 341 368 82 34 chr1 30762299 30762591 -166432841 - L2a LINE L2 -91 3335 3025 3 819 2661 103 138 5 chr1 30762591 30763010 -166432422 - IAPLTR2_Mm LTR ERVK 0 475 1 3 819 341 368 82 34 chr1 30763010 30763071 -166432361 - L2a LINE L2 -402 3024 2965 3 819 641 293 20 0 chr1 30763199 30763349 -166432083 + B3A SINE B2 1 153 -45 3 819 276 100 0 0 chr1 30763349 30763389 -166432043 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 819 2497 273 39 52 chr1 30763407 30764303 -166431129 - Lx9 LINE L1 0 7644 6761 3 819 284 64 21 0 chr1 30764755 30764802 -166430630 + (TTG)n Simple_repeat Simple_repeat 1 48 0 3 819 419 333 59 40 chr1 30765096 30765368 -166430064 - RLTR12B LTR ERVK -10 518 242 3 819 810 276 48 45 chr1 30765371 30765663 -166429769 - RLTR12B LTR ERVK -219 309 17 3 819 1371 100 10 50 chr1 30765889 30766089 -166429343 + B2_Mm1t SINE B2 2 193 0 3 819 6090 131 137 5 chr1 30766139 30767123 -166428309 - RLTR13D3 LTR ERVK 0 1114 1 3 819 625 205 110 0 chr1 30767440 30767567 -166427865 - B1_Mm SINE Alu -5 142 2 3 819 1169 42 6 6 chr1 30767744 30767912 -166427520 - MusHAL1 LINE L1 0 2712 2545 3 819 1563 57 0 0 chr1 30767911 30768203 -166427229 + L1_Mus1 LINE L1 6353 6567 0 3 819 271 184 0 0 chr1 30768203 30768252 -166427180 + Lx6 LINE L1 6571 6619 -841 3 819 18711 66 17 7 chr1 30768257 30770144 -166425288 - L1VL4 LINE L1 -155 3404 1499 3 819 1281 125 11 0 chr1 30770144 30770320 -166425112 + B2_Mm1t SINE B2 2 179 -14 3 819 18711 66 17 7 chr1 30770320 30770965 -166424467 - L1VL4 LINE L1 -2061 1498 847 3 819 573 86 0 0 chr1 30770965 30771058 -166424374 + (TTTAG)n Simple_repeat Simple_repeat 4 96 0 3 819 3705 87 57 21 chr1 30771058 30771480 -166423952 - L1VL4 LINE L1 -5456 846 408 3 819 592 223 83 0 chr1 30771491 30771648 -166423784 - Lx9 LINE L1 -564 7080 6911 3 819 2416 183 0 2 chr1 30771648 30772053 -166423379 - MTC LTR MaLR 0 421 18 3 819 295 293 0 62 chr1 30772449 30772573 -166422859 - ID4 SINE ID -37 115 3 3 819 297 68 0 0 chr1 30772595 30772639 -166422793 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 819 429 20 0 0 chr1 30772703 30772753 -166422679 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 819 558 191 33 133 chr1 30773346 30773617 -166421815 + RMER17C LTR ERVK 2 245 -165 3 819 710 145 5 43 chr1 30773647 30773834 -166421598 + CT-rich Low_complexity Low_complexity 1 180 0 3 819 4452 131 98 12 chr1 30773834 30774577 -166420855 + RMER17D2 LTR ERVK 1 807 -2 3 819 738 151 9 4 chr1 30774580 30774822 -166420610 + CT-rich Low_complexity Low_complexity 1 243 0 3 819 180 0 0 0 chr1 30776390 30776410 -166419022 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 3 819 4760 233 49 25 chr1 30776710 30778159 -166417273 + RMER1A Other Other 2 892 -138 3 819 803 105 8 0 chr1 30778159 30778283 -166417149 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 819 4760 219 70 4 chr1 30778283 30778396 -166417036 + RMER1A Other Other 893 1029 -1 3 819 987 184 47 0 chr1 30779199 30779389 -166416043 + L1_Mur2 LINE L1 2642 2840 -3037 3 819 36393 47 1 8 chr1 30779381 30784572 -166410860 + L1Md_F2 LINE L1 437 5585 -298 3 819 7836 58 3 7 chr1 30784573 30785559 -166409873 + L1Md_F2 LINE L1 5587 6568 -14 3 819 888 101 0 0 chr1 30785564 30785693 -166409739 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 3 819 754 139 106 0 chr1 30785693 30785844 -166409588 + L1_Mur2 LINE L1 2828 2994 -2883 3 819 5577 141 47 12 chr1 30785846 30786041 -166409391 + L1_Mur2 LINE L1 3705 3898 -1979 3 819 2190 151 3 9 chr1 30786041 30786389 -166409043 - ORR1A1 LTR MaLR 0 346 1 3 819 5577 141 47 12 chr1 30786389 30787175 -166408257 + L1_Mur2 LINE L1 3899 4720 -1157 3 819 35958 49 0 3 chr1 30787198 30792709 -166402723 + L1Md_T LINE L1 1 5589 -297 3 819 8623 32 0 0 chr1 30792709 30793705 -166401727 + L1Md_T LINE L1 5590 6585 0 3 819 409 255 18 58 chr1 30793710 30793881 -166401551 - RNLTR23 LTR ERVK 0 642 479 3 819 308 293 66 62 chr1 30794155 30794366 -166401066 - IAPLTR3-int LTR ERVK -4 6817 6606 3 819 3264 285 58 30 chr1 30794596 30794798 -166400634 - RNERVK23-int LTR ERVK -402 7815 7614 3 819 569 27 13 0 chr1 30794798 30794873 -166400559 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 819 3264 285 58 30 chr1 30794873 30795920 -166399512 - RNERVK23-int LTR ERVK -604 7613 6533 3 819 2780 144 5 5 chr1 30795920 30796367 -166399065 + Lx4B LINE L1 5647 6093 -965 3 819 907 178 104 0 chr1 30796513 30796715 -166398717 + Lx4B LINE L1 6815 7037 -21 3 819 578 14 14 0 chr1 30796715 30796786 -166398646 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3 819 270 73 0 0 chr1 30796987 30797028 -166398404 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 3 819 1086 110 0 0 chr1 30797033 30797179 -166398253 - B1_Mus1 SINE Alu -2 146 1 4 819 229 387 21 0 chr1 30797201 30797294 -166398138 + L2b LINE L2 3238 3332 -43 4 819 738 0 0 0 chr1 30798017 30798099 -166397333 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 4 819 574 0 0 0 chr1 30798359 30798429 -166397003 - L1Md_A LINE L1 0 6582 6513 4 819 2013 92 9 60 chr1 30798778 30799113 -166396319 - ORR1A2 LTR MaLR -9 318 1 4 819 1624 210 76 16 chr1 30799247 30799630 -166395802 - MTB_Mm LTR MaLR 0 407 2 4 102 34304 76 25 5 chr1 30799678 30805701 -166389731 - L1Md_F2 LINE L1 0 6582 446 4 820 1358 75 37 11 chr1 30805741 30805929 -166389503 + B2_Mm2 SINE B2 2 194 -1 4 820 414 0 0 0 chr1 30806902 30806948 -166388484 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 820 405 0 0 0 chr1 30808539 30808584 -166386848 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 820 430 286 7 22 chr1 30810191 30810327 -166385105 - B1F SINE Alu -1 148 15 4 820 538 258 0 24 chr1 30810429 30810556 -166384876 - ID_B1 SINE B4 -5 219 96 4 820 967 134 0 0 chr1 30810556 30810705 -166384727 - RLTR23 LTR ERV1 0 430 282 4 820 232 51 0 0 chr1 30810706 30810745 -166384687 - L1_Mus4 LINE L1 -6 6630 6592 4 820 4168 117 14 52 chr1 30810794 30811487 -166383945 - Lx LINE L1 -31 6623 5957 4 820 1571 134 6 63 chr1 30811487 30811805 -166383627 - RLTR23 LTR ERV1 -130 300 1 4 820 22 56 0 0 chr1 30813013 30813049 -166382383 + AT_rich Low_complexity Low_complexity 1 36 0 4 820 432 138 0 0 chr1 30813424 30813489 -166381943 + B1_Mur4 SINE Alu 1 65 -85 4 820 2575 201 95 30 chr1 30813489 30814451 -166380981 + RLTR13D1 LTR ERVK 1 1023 0 4 820 689 34 0 0 chr1 30814451 30814539 -166380893 + B1_Mus2 SINE Alu 59 146 -1 4 820 294 260 50 0 chr1 30815132 30815232 -166380200 - MER45B DNA Tip100 -152 888 784 4 820 395 157 364 13 chr1 30815445 30815596 -166379836 + RLTR16 LTR ERVK 1 204 -301 4 820 599 241 9 0 chr1 30815596 30815708 -166379724 + ETnERV2-int LTR ERVK 7083 7195 -211 4 820 1461 164 64 0 chr1 30816103 30816322 -166379110 + RLTR16 LTR ERVK 176 401 -104 4 820 333 47 0 0 chr1 30816322 30816365 -166379067 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 820 1461 164 64 0 chr1 30816365 30816425 -166379007 + RLTR16 LTR ERVK 402 471 -34 4 820 267 212 30 0 chr1 30817101 30817167 -166378265 + L1_Rod LINE L1 752 819 -6789 4 820 575 232 103 14 chr1 30817164 30817378 -166378054 + L1_Rod LINE L1 1044 1276 -6332 4 820 36315 44 7 3 chr1 30817376 30822756 -166372676 + L1Md_T LINE L1 93 5589 -297 4 820 8592 33 0 0 chr1 30822757 30823752 -166371680 + L1Md_T LINE L1 5591 6585 0 4 820 1976 210 12 24 chr1 30823752 30823920 -166371512 + L1_Rod LINE L1 1260 1427 -4420 4 820 285 29 0 0 chr1 30823920 30823954 -166371478 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 820 1976 210 12 24 chr1 30823954 30824287 -166371145 + L1_Rod LINE L1 1428 1754 -4093 4 820 509 211 9 0 chr1 30826116 30826230 -166369202 + Lx6 LINE L1 6544 6658 -802 4 820 369 0 0 0 chr1 30826280 30826321 -166369111 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 820 746 67 9 0 chr1 30829180 30829285 -166366147 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 4 820 370 314 64 0 chr1 30829362 30829502 -166365930 + B1F SINE Alu 1 149 0 4 820 988 46 0 0 chr1 30829551 30829682 -166365750 + B1_Mus1 SINE Alu 18 148 0 4 820 285 128 0 0 chr1 30829682 30829729 -166365703 + (A)n Simple_repeat Simple_repeat 1 47 0 4 820 190 260 173 27 chr1 30830738 30830813 -166364619 + MIRb SINE MIR 19 104 -164 4 820 1445 87 0 10 chr1 30831683 30831880 -166363552 + B2_Mm2 SINE B2 1 195 0 4 820 369 162 0 0 chr1 30831880 30831948 -166363484 + GA-rich Low_complexity Low_complexity 2 69 0 4 820 1115 87 6 0 chr1 30831948 30832109 -166363323 + (GGAA)n Simple_repeat Simple_repeat 4 165 0 4 820 259 269 0 0 chr1 30832365 30832432 -166363000 - MLT2B4 LTR ERVL -392 164 98 4 820 420 20 0 0 chr1 30832434 30832483 -166362949 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 820 1079 187 215 111 chr1 30832486 30832854 -166362578 - MT2A LTR ERVL -97 436 31 4 820 196 200 111 0 chr1 30833239 30833284 -166362148 - L2 LINE L2 -3278 141 92 4 820 559 311 84 51 chr1 30833342 30833672 -166361760 - MLT1D LTR MaLR -160 345 7 4 820 284 258 34 14 chr1 30834449 30834543 -166360889 - B1F1 SINE Alu -43 106 11 4 820 239 104 21 0 chr1 30834866 30834914 -166360518 + (TTTTTG)n Simple_repeat Simple_repeat 4 52 0 4 820 552 254 25 0 chr1 30834930 30835052 -166360380 + RSINE1 SINE B4 3 127 -38 4 820 360 0 0 0 chr1 30835056 30835096 -166360336 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 820 249 300 99 99 chr1 30835408 30835630 -166359802 + ID_B1 SINE B4 3 224 0 4 820 284 0 0 25 chr1 30835591 30835631 -166359801 + B1_Mm SINE Alu 109 147 0 4 820 227 29 0 54 chr1 30835936 30835973 -166359459 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 4 820 1103 273 74 30 chr1 30836427 30836790 -166358642 - MTE2b LTR MaLR 0 379 1 4 820 322 324 162 0 chr1 30836922 30837095 -166358337 + L1M5 LINE L1 5521 5721 -403 4 820 738 260 17 28 chr1 30837257 30837435 -166357997 - B3 SINE B2 -40 176 1 4 820 342 45 0 0 chr1 30837463 30837507 -166357925 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 4 820 304 321 60 6 chr1 30837800 30837966 -166357466 + L1M5 LINE L1 4645 4819 -1327 4 820 444 267 90 22 chr1 30838166 30838300 -166357132 + B1_Mur1 SINE Alu 1 143 -6 4 820 450 0 0 0 chr1 30839362 30839412 -166356020 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 820 1574 170 35 3 chr1 30839412 30839701 -166355731 - MT2A LTR ERVL -90 443 146 4 820 461 236 88 136 chr1 30839768 30839838 -166355594 - RMER12B LTR ERVK -259 1313 1255 4 820 360 119 0 0 chr1 30839838 30839897 -166355535 + (CATA)n Simple_repeat Simple_repeat 4 62 0 4 820 523 213 34 75 chr1 30839897 30840076 -166355356 - RMER12B LTR ERVK -144 1260 1076 4 820 5807 114 42 11 chr1 30840093 30841080 -166354352 - RMER12B LTR ERVK -180 1224 241 4 820 443 119 0 15 chr1 30841053 30841121 -166354311 - RMER12B LTR ERVK -1337 67 1 4 820 461 322 51 0 chr1 30841095 30841121 -166354311 - MTE2b LTR MaLR -193 186 1 4 820 917 166 0 0 chr1 30841121 30841272 -166354160 - MT2A LTR ERVL -382 151 1 4 820 609 289 31 21 chr1 30841504 30841698 -166353734 + B3A SINE B2 1 196 -2 4 820 268 367 111 0 chr1 30842070 30842160 -166353272 + B1F1 SINE Alu 1 100 -49 4 820 274 361 77 42 chr1 30842169 30842481 -166352951 - L4 LINE RTE -181 1848 1526 4 820 523 373 54 27 chr1 30842724 30843132 -166352300 - L4 LINE RTE -961 1068 650 4 820 542 214 175 0 chr1 30844057 30844183 -166351249 + B1_Mur2 SINE Alu 2 149 0 4 820 526 208 33 53 chr1 30844483 30844635 -166350797 + B1_Mur1 SINE Alu 1 149 0 4 820 239 268 51 43 chr1 30844736 30844853 -166350579 + L1M1 LINE L1 5364 5481 -819 4 820 473 255 133 41 chr1 30844969 30845284 -166350148 + L1MA8 LINE L1 5743 6086 -205 4 820 760 115 257 7 chr1 30845586 30845726 -166349706 - B2_Mm2 SINE B2 -19 176 2 4 820 315 191 0 0 chr1 30845728 30845791 -166349641 + T-rich Low_complexity Low_complexity 1 63 0 4 820 905 214 20 25 chr1 30845913 30846110 -166349322 - MTD LTR MaLR -8 411 216 4 820 405 0 0 0 chr1 30846436 30846481 -166348951 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 820 768 288 4 38 chr1 30846531 30846766 -166348666 - B4A SINE B4 -63 229 3 4 820 419 272 62 39 chr1 30847139 30847269 -166348163 - LTR88b LTR Gypsy? -657 180 48 4 820 243 286 38 70 chr1 30847508 30847666 -166347766 + L1MD LINE L1 5434 5586 -773 4 820 1236 244 35 117 chr1 30847679 30848073 -166347359 - MTE2a LTR MaLR -14 365 4 4 820 412 283 22 0 chr1 30848156 30848294 -166347138 + L1MD LINE L1 5657 5797 -562 4 820 21 0 0 0 chr1 30849107 30849128 -166346304 + AT_rich Low_complexity Low_complexity 1 21 0 4 820 234 62 0 0 chr1 30850215 30850247 -166345185 + (A)n Simple_repeat Simple_repeat 1 32 0 4 820 1251 206 50 59 chr1 30850323 30850643 -166344789 - MTE2a LTR MaLR 0 379 63 4 820 1290 195 14 14 chr1 30850643 30850919 -166344513 + Lx9 LINE L1 6536 6811 -833 4 820 259 260 39 16 chr1 30851094 30851223 -166344209 + Lx9 LINE L1 7470 7601 -43 4 820 258 298 45 45 chr1 30851856 30851944 -166343488 - MER20 DNA MER1_type -45 174 87 4 820 3884 121 8 14 chr1 30852150 30852743 -166342689 - Lx3C LINE L1 0 6976 6387 4 820 294 306 80 8 chr1 30852915 30853040 -166342392 + LTR37A LTR ERV1 241 374 -52 4 820 240 171 24 95 chr1 30853049 30853092 -166342340 + L1M2 LINE L1 5408 5446 -854 4 820 2051 122 77 6 chr1 30853092 30853445 -166341987 - ORR1C1 LTR MaLR 0 378 1 4 820 240 171 24 95 chr1 30853445 30853485 -166341947 + L1M2 LINE L1 5447 5485 -815 4 820 528 259 7 22 chr1 30853508 30853646 -166341786 + RMER15 LTR ERVL 299 434 -141 4 820 245 271 83 76 chr1 30853737 30853792 -166341640 + MT2B LTR ERVL 115 170 -431 4 820 295 218 195 0 chr1 30853792 30853879 -166341553 + PB1D9 SINE Alu 1 104 -16 4 820 2537 82 116 0 chr1 30854235 30854423 -166341009 - BGLII_Mus LTR ERVK 0 422 218 4 820 567 0 0 0 chr1 30854423 30854486 -166340946 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 820 2537 82 116 0 chr1 30854486 30854675 -166340757 - BGLII_Mus LTR ERVK -205 217 2 4 820 2099 139 39 17 chr1 30854890 30855248 -166340184 - MTC LTR MaLR -11 410 45 4 820 503 333 65 65 chr1 30855315 30855607 -166339825 - B4 SINE B4 0 292 1 4 820 878 292 58 26 chr1 30855847 30856195 -166339237 + Lx5 LINE L1 6675 7033 -17 4 820 566 258 46 63 chr1 30856209 30856383 -166339049 + MTEa LTR MaLR 39 209 -170 4 820 510 317 14 35 chr1 30856419 30856563 -166338869 - B1F2 SINE Alu -8 141 1 4 820 389 312 37 106 chr1 30856563 30856574 -166338858 - ID_B1 SINE B4 -2 180 73 4 820 918 268 93 10 chr1 30856613 30856915 -166338517 + Lx8 LINE L1 6506 6832 -641 4 820 434 305 138 0 chr1 30856909 30857076 -166338356 + Lx8 LINE L1 6964 7153 -320 4 820 288 176 20 0 chr1 30857286 30857337 -166338095 - ID_B1 SINE B4 -11 213 162 4 820 276 310 57 57 chr1 30857337 30857409 -166338023 - B1F SINE Alu -11 138 16 4 820 713 292 135 36 chr1 30858105 30858481 -166336951 + MT2B LTR ERVL 52 601 0 4 820 210 298 0 0 chr1 30860694 30860751 -166334681 + CT-rich Low_complexity Low_complexity 2 58 0 4 820 186 171 0 0 chr1 30860892 30860933 -166334499 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 4 820 3000 35 3 5 chr1 30863373 30863742 -166331690 + L1Md_F2 LINE L1 6215 6582 0 5 820 293 296 12 0 chr1 30864146 30864227 -166331205 + MER46C DNA MER2_type 247 328 -10 5 820 220 278 268 0 chr1 30865288 30865385 -166330047 - B4 SINE B4 -117 175 53 5 820 214 312 88 59 chr1 30865771 30865839 -166329593 + ID SINE ID 2 71 -153 5 820 281 207 0 12 chr1 30865785 30865839 -166329593 + tRNA-Ala-GCA tRNA tRNA 15 64 -11 5 820 246 274 0 75 chr1 30865839 30865852 -166329580 + ID4_ SINE ID 21 82 -1 5 820 192 40 0 0 chr1 30866123 30866148 -166329284 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 5 820 710 215 14 7 chr1 30866148 30866293 -166329139 - B1_Mur2 SINE Alu 0 149 4 5 820 557 289 7 19 chr1 30867705 30867860 -166327572 + RSINE1 SINE B4 5 157 -8 5 820 854 221 33 42 chr1 30868187 30868400 -166327032 - B3 SINE B2 -4 212 2 5 820 699 204 7 28 chr1 30869206 30869347 -166326085 + B1_Mm SINE Alu 9 146 -1 5 820 371 257 40 40 chr1 30870363 30870537 -166324895 + RMER17B LTR ERVK 286 459 -499 5 820 21 0 0 0 chr1 30872168 30872189 -166323243 + AT_rich Low_complexity Low_complexity 1 21 0 5 820 469 261 59 0 chr1 30872531 30872650 -166322782 + B3 SINE B2 1 126 -90 5 820 1317 202 222 15 chr1 30872650 30872992 -166322440 + MTC LTR MaLR 1 413 -8 5 820 21 57 0 0 chr1 30873057 30873092 -166322340 + AT_rich Low_complexity Low_complexity 1 35 0 5 820 274 279 12 12 chr1 30873172 30873252 -166322180 + G-rich Low_complexity Low_complexity 3 82 0 5 820 350 220 105 42 chr1 30873640 30873735 -166321697 + PB1D10 SINE Alu 2 102 -15 5 820 235 170 0 19 chr1 30874080 30874134 -166321298 + T-rich Low_complexity Low_complexity 5 57 0 5 820 983 116 133 6 chr1 30874560 30874575 -166320857 - B2_Mm2 SINE B2 0 195 181 5 820 1199 55 0 0 chr1 30874575 30874720 -166320712 - B1_Mm SINE Alu -2 145 1 5 820 983 116 133 6 chr1 30874720 30874877 -166320555 - B2_Mm2 SINE B2 -15 180 1 5 820 1097 109 0 0 chr1 30874906 30875053 -166320379 + B1_Mus2 SINE Alu 1 147 0 5 820 1074 58 7 21 chr1 30875071 30875213 -166320219 + B1_Mus2 SINE Alu 2 141 -6 5 820 198 156 0 0 chr1 30875216 30875261 -166320171 + A-rich Low_complexity Low_complexity 1 45 0 5 820 24 32 0 0 chr1 30875539 30875570 -166319862 + AT_rich Low_complexity Low_complexity 1 31 0 5 820 207 167 0 0 chr1 30875636 30875672 -166319760 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 820 27 73 0 0 chr1 30875747 30875802 -166319630 + AT_rich Low_complexity Low_complexity 1 55 0 5 820 272 316 13 0 chr1 30875817 30875893 -166319539 - PB1 SINE Alu -13 114 38 5 820 587 250 60 42 chr1 30876188 30876355 -166319077 + ID_B1 SINE B4 1 170 -54 5 820 347 304 59 33 chr1 30876719 30876872 -166318560 + RSINE1 SINE B4 9 165 0 5 820 2448 77 3 0 chr1 30877136 30877462 -166317970 - L1_Mus1 LINE L1 0 6567 6241 5 820 423 160 0 0 chr1 30878308 30878383 -166317049 + (CATA)n Simple_repeat Simple_repeat 2 76 0 5 820 1342 73 22 0 chr1 30878389 30878568 -166316864 + B2_Mm2 SINE B2 3 185 -10 5 820 732 264 44 39 chr1 30879068 30879249 -166316183 - B3 SINE B2 -34 182 1 5 820 667 179 93 36 chr1 30879412 30879551 -166315881 + B1_Mus2 SINE Alu 1 147 0 5 820 506 178 211 18 chr1 30880438 30880547 -166314885 + B3 SINE B2 1 130 -86 5 820 839 42 8 8 chr1 30884238 30884358 -166311074 + L1_Mus1 LINE L1 6448 6567 0 5 820 581 40 0 13 chr1 30884937 30885014 -166310418 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 5 820 261 167 0 0 chr1 30886633 30886687 -166308745 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 820 196 77 51 0 chr1 30888565 30888604 -166306828 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 820 301 262 162 19 chr1 30888972 30889077 -166306355 - ID_B1 SINE B4 -11 213 94 5 820 769 246 67 39 chr1 30889700 30889983 -166305449 + B4A SINE B4 2 292 0 5 820 21 57 0 0 chr1 30890361 30890396 -166305036 + AT_rich Low_complexity Low_complexity 1 35 0 5 820 1101 197 62 0 chr1 30890683 30890891 -166304541 + URR1B DNA MER1_type 1 221 -4 5 820 5237 168 70 10 chr1 30892317 30893416 -166302016 + Lx9 LINE L1 6327 7491 -153 5 820 440 256 197 0 chr1 30893418 30893437 -166301995 + B4 SINE B4 70 179 -113 5 820 696 135 18 0 chr1 30893437 30893548 -166301884 + PB1D9 SINE Alu 8 120 0 5 820 21 0 0 0 chr1 30893639 30893660 -166301772 + AT_rich Low_complexity Low_complexity 1 21 0 5 820 372 360 16 8 chr1 30893698 30893824 -166301608 + ID_B1 SINE B4 81 207 -17 5 820 21 0 0 0 chr1 30894129 30894150 -166301282 + AT_rich Low_complexity Low_complexity 1 21 0 5 820 238 50 50 0 chr1 30894577 30894617 -166300815 + (GGAAA)n Simple_repeat Simple_repeat 2 43 0 5 820 328 253 52 10 chr1 30894785 30894881 -166300551 + MIRc SINE MIR 165 264 -4 5 820 221 344 10 41 chr1 30894892 30894989 -166300443 - L3 LINE CR1 -20 4469 4376 5 820 511 276 54 20 chr1 30895766 30895914 -166299518 - RSINE1 SINE B4 -9 156 4 5 820 503 340 7 64 chr1 30897365 30897581 -166297851 - B4A SINE B4 -4 288 83 5 820 201 147 0 0 chr1 30897595 30897629 -166297803 + (TATG)n Simple_repeat Simple_repeat 2 35 0 5 820 598 295 29 0 chr1 30897658 30897797 -166297635 - RSINE1 SINE B4 -19 146 4 5 820 1166 255 171 0 chr1 30897829 30898139 -166297293 + ORR1D2 LTR MaLR 1 363 -7 5 820 1492 47 21 0 chr1 30898145 30898335 -166297097 + B2_Mm2 SINE B2 2 195 0 5 820 195 297 71 81 chr1 30898507 30898606 -166296826 + MIRm SINE MIR 163 260 -16 5 820 182 338 101 14 chr1 30899363 30899432 -166296000 + L2a LINE L2 3304 3378 -48 5 820 270 0 0 0 chr1 30900091 30900121 -166295311 + (CGTG)n Simple_repeat Simple_repeat 1 30 0 5 820 646 281 65 10 chr1 30901679 30901880 -166293552 + ID_B1 SINE B4 13 224 0 5 820 486 194 0 51 chr1 30902662 30902760 -166292672 + PB1D7 SINE Alu 23 115 -5 5 820 305 239 171 18 chr1 30902760 30902771 -166292661 + B4A SINE B4 108 233 -59 5 820 470 322 31 49 chr1 30902786 30902949 -166292483 + RSINE1 SINE B4 6 165 0 5 820 260 343 104 39 chr1 30902793 30902975 -166292457 + B3 SINE B2 20 213 -3 5 820 485 224 129 65 chr1 30903119 30903305 -166292127 - B3A SINE B2 0 198 1 5 820 297 280 116 43 chr1 30903592 30903756 -166291676 + Charlie7 DNA MER1_type 1474 1649 -963 5 820 406 325 16 8 chr1 30903875 30903999 -166291433 + ID_B1 SINE B4 96 220 -4 5 820 340 221 22 65 chr1 30903978 30904046 -166291386 + B4A SINE B4 203 269 -23 5 820 417 90 0 0 chr1 30904046 30904113 -166291319 + (CACG)n Simple_repeat Simple_repeat 1 67 0 5 820 340 221 22 65 chr1 30904113 30904136 -166291296 + B4A SINE B4 270 290 -2 5 820 245 246 68 14 chr1 30904429 30904503 -166290929 + MLT1J LTR MaLR 66 143 -369 5 820 248 231 0 0 chr1 30905418 30905470 -166289962 - B1F SINE Alu -54 95 44 5 820 21 36 0 0 chr1 30905496 30905524 -166289908 + AT_rich Low_complexity Low_complexity 1 28 0 5 820 493 223 116 0 chr1 30905540 30905661 -166289771 - RSINE1 SINE B4 -28 137 3 5 820 510 287 61 81 chr1 30905852 30906049 -166289383 + B3A SINE B2 1 193 0 5 820 447 68 0 0 chr1 30907450 30907509 -166287923 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 5 820 380 311 99 50 chr1 30907643 30908007 -166287425 - LTR40c LTR ERVL -8 511 87 5 820 687 273 121 36 chr1 30908765 30909096 -166286336 + ORR1E LTR MaLR 1 359 0 5 820 313 268 194 8 chr1 30909405 30909529 -166285903 + MLT2B2 LTR ERVL 3 149 -366 5 820 1922 181 42 35 chr1 30909823 30910301 -166285131 + RLTR31_Mur LTR ERVK 1 553 0 5 820 33828 34 0 0 chr1 30910526 30915777 -166279655 + L1Md_T LINE L1 242 5589 -297 5 820 8884 9 0 6 chr1 30915777 30916779 -166278653 + L1Md_T LINE L1 5590 6585 0 5 820 533 230 23 16 chr1 30917020 30917148 -166278284 - B1F SINE Alu -5 144 16 5 820 574 221 0 0 chr1 30918633 30918737 -166276695 - PB1D10 SINE Alu -9 108 5 5 820 305 239 14 43 chr1 30918897 30918967 -166276465 + ID4_ SINE ID 16 83 0 5 820 414 271 89 68 chr1 30919106 30919343 -166276089 - MER33 DNA MER1_type -82 242 1 5 820 302 317 0 10 chr1 30919509 30919611 -166275821 + MER94 DNA AcHobo 34 134 0 5 820 2791 3 3 3 chr1 30921041 30921360 -166274072 + L1Md_T LINE L1 6264 6582 0 5 820 244 219 175 10 chr1 30921372 30921469 -166273963 + PB1D7 SINE Alu 1 113 -7 5 820 206 355 84 13 chr1 30921499 30921653 -166273779 - MIRb SINE MIR -18 250 86 5 820 247 213 43 0 chr1 30921881 30921928 -166273504 + PB1D10 SINE Alu 53 101 -16 5 820 1090 72 0 0 chr1 30921928 30922066 -166273366 + B1_Mus2 SINE Alu 2 139 -8 5 820 216 0 0 0 chr1 30922163 30922187 -166273245 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 820 230 250 40 0 chr1 30923061 30923137 -166272295 + L1MD3 LINE L1 7901 7979 -16 5 820 1261 98 27 0 chr1 30923670 30923854 -166271578 + B2_Mm1t SINE B2 1 189 -4 5 820 236 247 46 110 chr1 30924285 30924394 -166271038 + B1_Mus1 SINE Alu 39 140 -8 5 820 302 220 227 8 chr1 30924549 30924668 -166270764 + ID_B1 SINE B4 80 224 0 5 820 1078 188 189 56 chr1 30924788 30925110 -166270322 + ORR1D1 LTR MaLR 2 366 -8 5 820 272 318 123 26 chr1 30925174 30925329 -166270103 - L2a LINE L2 -250 3176 3007 5 820 256 229 155 12 chr1 30925530 30925614 -166269818 - PB1D7 SINE Alu -12 108 13 5 820 230 355 44 11 chr1 30925649 30925740 -166269692 + MER20 DNA MER1_type 21 114 -105 6 820 205 302 0 45 chr1 30926016 30926082 -166269350 - MIR SINE MIR -73 189 127 6 820 568 234 60 46 chr1 30926189 30926355 -166269077 + B3 SINE B2 13 183 -15 6 820 29 0 0 0 chr1 30926355 30926384 -166269048 + AT_rich Low_complexity Low_complexity 1 29 0 6 820 258 369 71 0 chr1 30926845 30926986 -166268446 - MIR SINE MIR -93 169 19 6 820 397 260 42 14 chr1 30927415 30927537 -166267895 + B1_Mur1 SINE Alu 24 143 -6 6 820 454 182 125 18 chr1 30927758 30927870 -166267562 + B1_Mur4 SINE Alu 26 149 -1 6 820 226 204 0 36 chr1 30927870 30927926 -166267506 + A-rich Low_complexity Low_complexity 1 54 0 6 820 393 22 0 0 chr1 30928052 30928098 -166267334 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 820 183 42 0 0 chr1 30928262 30928286 -166267146 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 820 220 342 0 0 chr1 30928394 30928470 -166266962 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 820 204 135 0 0 chr1 30930258 30930295 -166265137 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 6 820 21 0 0 0 chr1 30930545 30930566 -166264866 + GC_rich Low_complexity Low_complexity 1 21 0 6 820 252 302 157 16 chr1 30931033 30931154 -166264278 + B4 SINE B4 82 219 -73 6 820 476 208 17 30 chr1 30931046 30931185 -166264247 + PB1D9 SINE Alu 10 149 -1 6 820 252 0 0 0 chr1 30931985 30932013 -166263419 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 820 184 91 22 22 chr1 30932247 30932292 -166263140 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 6 821 1091 72 0 0 chr1 30933306 30933445 -166261987 - B1_Mm SINE Alu 0 147 9 6 821 509 225 38 132 chr1 30933307 30933466 -166261966 - B4 SINE B4 -69 223 80 6 821 2420 54 79 0 chr1 30933476 30933793 -166261639 - ORR1A1 LTR MaLR 0 346 5 6 821 345 192 100 25 chr1 30933811 30933891 -166261541 + RSINE1 SINE B4 2 87 -78 6 821 882 151 169 51 chr1 30933892 30934014 -166261418 + URR1B DNA MER1_type 1 155 -70 6 821 1330 92 5 16 chr1 30934014 30934202 -166261230 + B2_Mm1t SINE B2 1 186 -7 6 821 882 151 169 51 chr1 30934202 30934274 -166261158 + URR1B DNA MER1_type 156 218 -7 6 821 1261 205 196 32 chr1 30935154 30935532 -166259900 - MT2A LTR ERVL -2 531 92 6 821 3521 29 0 14 chr1 30935539 30935965 -166259467 + L1_Mus1 LINE L1 6148 6567 0 6 821 1373 66 50 0 chr1 30935992 30936174 -166259258 - B2_Mm2 SINE B2 -4 191 1 6 821 712 148 57 0 chr1 30936354 30936476 -166258956 - MT2A LTR ERVL -404 129 1 6 821 440 291 0 10 chr1 30937455 30937559 -166257873 - PB1D10 SINE Alu -3 114 12 6 821 1789 241 47 98 chr1 30937559 30938203 -166257229 - RMER19C LTR ERVK 0 611 1 6 821 383 268 157 42 chr1 30938414 30938605 -166256827 + RMER15 LTR ERVL 356 568 -7 6 821 539 301 38 19 chr1 30938904 30939063 -166256369 + RSINE1 SINE B4 4 165 0 6 821 1014 144 52 0 chr1 30939097 30939270 -166256162 - B2_Mm2 SINE B2 -12 183 2 6 821 276 102 0 0 chr1 30939411 30939460 -166255972 + (T)n Simple_repeat Simple_repeat 1 49 0 6 821 1166 56 0 0 chr1 30939463 30939605 -166255827 - B1_Mus1 SINE Alu -5 143 2 6 821 1463 243 69 36 chr1 30939890 30940283 -166255149 - MTD LTR MaLR 0 419 14 6 821 1097 125 18 0 chr1 30940694 30940862 -166254570 + B2_Mm2 SINE B2 2 172 -23 6 821 4373 117 8 3 chr1 30940877 30941522 -166253910 + Lx LINE L1 6003 6650 -4 6 821 199 0 65 0 chr1 30941529 30941560 -166253872 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 821 209 0 98 0 chr1 30941554 30941595 -166253837 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 821 507 33 0 0 chr1 30941637 30941698 -166253734 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 821 24 32 0 0 chr1 30941905 30941936 -166253496 + AT_rich Low_complexity Low_complexity 1 31 0 6 821 221 319 109 11 chr1 30942314 30942326 -166253106 + ID_B1 SINE B4 70 90 -134 6 821 251 333 117 39 chr1 30942326 30942429 -166253003 + B1F1 SINE Alu 2 112 -37 6 821 242 238 0 0 chr1 30942501 30942543 -166252889 + PB1D7 SINE Alu 1 42 -78 6 821 973 175 32 51 chr1 30942685 30942902 -166252530 + B3 SINE B2 3 215 -1 6 821 317 68 0 48 chr1 30943088 30943150 -166252282 - L1Md_F2 LINE L1 -3 6579 6521 6 821 1031 176 4 71 chr1 30944058 30944212 -166251220 - RMER4A LTR ERVK 0 466 323 6 821 534 31 0 0 chr1 30944212 30944276 -166251156 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 6 821 579 29 0 0 chr1 30944277 30944346 -166251086 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 821 1031 176 4 71 chr1 30944346 30944415 -166251017 - RMER4A LTR ERVK -144 322 256 6 821 1334 110 272 21 chr1 30944415 30944780 -166250652 - MT2B2 LTR ERVL 0 475 19 6 821 914 207 5 5 chr1 30944744 30944933 -166250499 - RMER4A LTR ERVK -391 194 6 6 821 32 26 0 0 chr1 30944948 30944987 -166250445 + AT_rich Low_complexity Low_complexity 1 39 0 6 821 292 345 9 9 chr1 30945630 30945741 -166249691 + B1F SINE Alu 4 114 -35 6 821 1188 62 0 0 chr1 30945790 30945936 -166249496 - B1_Mus2 SINE Alu 0 147 2 6 821 661 167 31 31 chr1 30946021 30946151 -166249281 - URR1A DNA MER1_type -95 131 2 6 821 315 286 13 0 chr1 30946182 30946259 -166249173 - PB1D10 SINE Alu -39 78 1 6 821 1783 211 106 95 chr1 30946474 30946658 -166248774 + Lx2B LINE L1 6443 6620 -380 6 821 1153 95 0 0 chr1 30946658 30946805 -166248627 + B1_Mm SINE Alu 1 147 0 6 821 1783 211 106 95 chr1 30946805 30947169 -166248263 + Lx2B LINE L1 6621 6997 -3 6 821 630 0 0 0 chr1 30947233 30947303 -166248129 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 6 821 1129 52 0 0 chr1 30947304 30947438 -166247994 - B1_Mm SINE Alu -13 134 1 6 821 1462 72 0 25 chr1 30947486 30947686 -166247746 + B2_Mm2 SINE B2 1 195 0 6 821 315 257 108 18 chr1 30947904 30947937 -166247495 - Lx8 LINE L1 -99 7374 7333 6 821 288 0 0 0 chr1 30947937 30947969 -166247463 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 821 315 257 108 18 chr1 30947969 30948046 -166247386 - Lx8 LINE L1 -141 7332 7255 6 821 207 0 0 0 chr1 30948138 30948161 -166247271 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 821 942 61 0 22 chr1 30948165 30948300 -166247132 - B1_Mus2 SINE Alu 0 147 16 6 821 583 316 48 0 chr1 30948642 30948851 -166246581 + MER47B DNA MER2_type 27 245 -173 6 821 259 301 34 67 chr1 30948934 30949023 -166246409 + PB1D10 SINE Alu 31 116 -1 6 821 285 77 19 19 chr1 30949319 30949372 -166246060 - B1_Mus2 SINE Alu 0 147 95 6 821 2413 95 3 3 chr1 30949510 30949837 -166245595 + ORR1A2 LTR MaLR 1 327 0 6 821 380 331 25 0 chr1 30949874 30949995 -166245437 - MER21B LTR ERV1 -149 714 591 6 821 964 273 26 4 chr1 30950120 30950352 -166245080 + MTE2b LTR MaLR 11 247 -132 6 821 543 253 94 56 chr1 30950360 30950436 -166244996 + MTE2b LTR MaLR 192 275 -104 6 821 3545 20 2 0 chr1 30950436 30950831 -166244601 + MTA_Mm LTR MaLR 1 396 0 6 821 9460 23 5 1 chr1 30950831 30951923 -166243509 + MTA_Mm-int LTR MaLR 1 1096 -2 6 821 3545 20 2 0 chr1 30951925 30952320 -166243112 + MTA_Mm LTR MaLR 1 396 0 6 821 543 253 94 56 chr1 30952320 30952419 -166243013 + MTE2b LTR MaLR 276 377 -2 6 821 651 67 0 0 chr1 30952535 30952624 -166242808 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 821 26 0 0 0 chr1 30952730 30952756 -166242676 + AT_rich Low_complexity Low_complexity 1 26 0 6 821 1807 93 56 62 chr1 30952780 30953100 -166242332 - ORR1A4 LTR MaLR -8 321 4 6 821 312 276 112 0 chr1 30953103 30953201 -166242231 + PB1D10 SINE Alu 7 115 -2 6 821 1573 179 21 21 chr1 30954026 30954352 -166241080 + ORR1B2 LTR MaLR 42 367 0 6 821 628 267 14 0 chr1 30954352 30954498 -166240934 - B3 SINE B2 -31 185 38 6 821 295 187 107 0 chr1 30954498 30954573 -166240859 + L1M3 LINE L1 4575 4657 -1483 6 821 4631 201 51 50 chr1 30954718 30955576 -166239856 + Lx4B LINE L1 5703 6568 -490 6 821 3893 99 31 4 chr1 30955576 30956125 -166239307 + LTRIS2 LTR ERV1 1 564 0 6 821 4631 222 50 44 chr1 30956125 30956448 -166238984 + Lx4B LINE L1 6222 6796 -262 6 821 243 0 0 0 chr1 30956479 30956506 -166238926 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 6 821 4471 128 68 13 chr1 30956623 30957390 -166238042 + RMER17D2 LTR ERVK 1 809 0 6 821 295 299 0 0 chr1 30957475 30957542 -166237890 + B4 SINE B4 130 196 -96 6 821 2995 68 19 21 chr1 30957542 30957960 -166237472 - BGLII LTR ERVK 0 421 5 6 821 2087 222 106 47 chr1 30957962 30958680 -166236752 - RMER3D-int LTR ERVK -1 2841 2082 6 821 368 295 133 0 chr1 30958688 30958793 -166236639 + B4 SINE B4 154 272 -20 6 821 308 119 17 0 chr1 30958797 30958856 -166236576 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 821 405 0 0 0 chr1 30958856 30958901 -166236531 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 6 821 762 306 46 15 chr1 30958905 30959167 -166236265 + MTEa-int LTR MaLR 682 951 -629 6 821 748 198 6 28 chr1 30960615 30960797 -166234635 - RLTR30 LTR ERV1 0 379 202 6 821 1831 271 51 42 chr1 30962185 30962571 -166232861 + MTEa-int LTR MaLR 1011 1501 -462 6 821 327 25 0 0 chr1 30962571 30962611 -166232821 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 821 1831 267 50 34 chr1 30962611 30962831 -166232601 + MTEa-int LTR MaLR 1359 1577 -3 6 821 1019 285 62 51 chr1 30962824 30963198 -166232234 + MTEa LTR MaLR 2 379 0 6 821 1144 75 0 0 chr1 30963440 30963587 -166231845 + B1_Mus2 SINE Alu 1 147 0 6 821 216 0 0 0 chr1 30963587 30963611 -166231821 + (A)n Simple_repeat Simple_repeat 1 24 0 6 821 1381 239 43 103 chr1 30963989 30965034 -166230398 + Lx9 LINE L1 5416 6551 -1093 6 821 891 166 184 16 chr1 30965037 30965282 -166230150 + Lx9 LINE L1 7359 7644 0 6 821 1181 62 0 0 chr1 30965497 30965642 -166229790 + B1_Mus1 SINE Alu 3 147 -1 6 821 294 303 56 0 chr1 30965746 30965835 -166229597 + LTR40c LTR ERVL 44 137 -328 6 821 1380 146 14 0 chr1 30966113 30966333 -166229099 + URR1A DNA MER1_type 1 223 -3 6 821 360 250 0 0 chr1 30966461 30966541 -166228891 + MTD LTR MaLR 41 120 -299 6 821 520 135 102 8 chr1 30966552 30966679 -166228753 - Lx9 LINE L1 -1 7643 7505 6 821 656 133 19 0 chr1 30966787 30966892 -166228540 - Lx9 LINE L1 -179 7465 7359 6 821 820 245 117 0 chr1 30966903 30967160 -166228272 + MTD LTR MaLR 112 398 -21 6 821 2171 163 40 15 chr1 30968330 30968729 -166226703 - Lx4B LINE L1 -8 7050 6642 6 821 5473 152 24 20 chr1 30968724 30969877 -166225555 - Lx4B LINE L1 -548 6510 5352 6 821 4163 11 0 2 chr1 30969877 30970339 -166225093 - L1Md_A LINE L1 0 6582 6122 6 821 4818 150 21 36 chr1 30970339 30970650 -166224782 - Lx4B LINE L1 -526 5351 5034 6 821 633 172 58 58 chr1 30970664 30970687 -166224745 - MTD LTR MaLR -261 158 142 7 821 2635 98 36 36 chr1 30970687 30971098 -166224334 + IAPLTR2a LTR ERVK 1 411 0 7 821 633 172 58 58 chr1 30971098 30971228 -166224204 - MTD LTR MaLR -278 141 5 7 821 428 252 20 0 chr1 30971281 30971380 -166224052 + B3A SINE B2 2 102 -96 7 821 354 108 0 0 chr1 30971381 30971446 -166223986 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 821 2473 162 44 0 chr1 30972295 30972726 -166222706 - RMER1B Other Other 0 1066 617 7 821 1367 100 5 0 chr1 30973058 30973248 -166222184 + B2_Mm1a SINE B2 2 192 -1 7 821 758 234 62 9 chr1 30973573 30973784 -166221648 - Lx5 LINE L1 0 7050 6829 7 821 542 262 13 46 chr1 30973784 30973936 -166221496 - ID_B1 SINE B4 0 224 78 7 821 1139 88 0 0 chr1 30973957 30974105 -166221327 + B1_Mus1 SINE Alu 1 148 0 7 821 898 141 0 0 chr1 30974124 30974259 -166221173 + B1_Mus1 SINE Alu 1 135 -13 7 821 305 24 24 0 chr1 30974260 30974302 -166221130 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 821 237 242 0 125 chr1 30974315 30974419 -166221013 - ORR1D2 LTR MaLR -57 313 223 7 821 911 309 65 14 chr1 30974413 30974768 -166220664 - RLTR18B LTR ERVK -5 507 135 7 821 231 118 0 0 chr1 30974766 30974800 -166220632 - tRNA-Ala-GCY_ tRNA tRNA -10 65 32 7 821 1201 99 27 21 chr1 30975337 30975523 -166219909 - B2_Mm2 SINE B2 -8 187 1 7 821 512 309 73 11 chr1 30976371 30976548 -166218884 - RLTR6-int LTR ERV1 -2396 5382 5195 7 821 251 340 45 9 chr1 30976771 30976881 -166218551 - RLTR6-int LTR ERV1 -6089 1689 1576 7 821 3621 104 72 4 chr1 30978426 30978957 -166216475 - RMER2 LTR ERV1 0 567 1 7 821 224 30 0 29 chr1 30979013 30979047 -166216385 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 7 821 921 124 19 7 chr1 30979051 30979205 -166216227 - ORR1B1 LTR MaLR -28 366 211 7 821 592 186 43 17 chr1 30979263 30979378 -166216054 - B1_Mus2 SINE Alu -26 121 4 7 821 736 180 280 43 chr1 30979378 30979583 -166215849 - MT2B LTR ERVL -341 260 1 7 821 352 305 109 0 chr1 30979615 30979743 -166215689 + ID_B1 SINE B4 81 222 -2 7 821 255 61 0 0 chr1 30979744 30979777 -166215655 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 7 821 3098 195 90 3 chr1 30980352 30980955 -166214477 - Lx6 LINE L1 -26 7434 6780 7 821 3515 84 45 63 chr1 30981442 30981753 -166213679 - LTRIS_Mus LTR ERV1 0 587 307 7 821 4702 40 0 0 chr1 30981753 30982303 -166213129 - L1Md_T LINE L1 0 6582 6033 7 821 3515 84 45 63 chr1 30982303 30982589 -166212843 - LTRIS_Mus LTR ERV1 -281 306 1 7 821 41 48 0 0 chr1 30982637 30982699 -166212733 + AT_rich Low_complexity Low_complexity 1 62 0 7 821 926 104 0 0 chr1 30982812 30982946 -166212486 + B1_Mm SINE Alu 14 147 0 7 821 450 241 36 8 chr1 30982985 30983122 -166212310 - MTC LTR MaLR -24 395 244 7 821 488 286 81 78 chr1 30983192 30983382 -166212050 - MTC LTR MaLR -160 259 59 7 821 1376 90 16 0 chr1 30983382 30983571 -166211861 - B2_Mm1t SINE B2 -1 192 1 7 821 488 303 35 55 chr1 30983571 30983638 -166211794 - MTC LTR MaLR -363 58 1 7 821 216 333 0 0 chr1 30983796 30983862 -166211570 + GA-rich Low_complexity Low_complexity 4 69 0 7 821 531 252 6 81 chr1 30983957 30983979 -166211453 + B1_Mur1 SINE Alu 2 20 -129 7 821 3406 38 2 0 chr1 30983979 30984374 -166211058 - MTA_Mm LTR MaLR 0 396 1 7 821 531 252 6 81 chr1 30984374 30984511 -166210921 + B1_Mur1 SINE Alu 21 149 0 7 821 276 100 0 0 chr1 30984514 30984554 -166210878 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 7 821 980 105 7 0 chr1 30984554 30984706 -166210726 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 7 821 315 204 0 0 chr1 30984741 30984795 -166210637 + PB1D9 SINE Alu 6 59 -61 7 821 222 183 0 189 chr1 30984860 30984919 -166210513 + PB1D9 SINE Alu 60 108 -12 7 821 243 0 0 0 chr1 30984919 30984946 -166210486 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 7 821 222 183 0 189 chr1 30984946 30984960 -166210472 + PB1D9 SINE Alu 109 119 -1 7 821 3201 68 7 2 chr1 30984971 30985384 -166210048 + L1_Mus2 LINE L1 6152 6566 0 7 821 1199 41 7 0 chr1 30985693 30985838 -166209594 - B1_Mus1 SINE Alu 0 148 3 7 821 2247 144 30 30 chr1 30986136 30986530 -166208902 - ORR1B1 LTR MaLR 0 394 1 7 821 1158 74 0 7 chr1 30986748 30986897 -166208535 - B1_Mus1 SINE Alu 0 148 1 7 821 974 91 0 7 chr1 30987324 30987468 -166207964 + (TTTTC)n Simple_repeat Simple_repeat 2 144 0 7 821 428 246 104 40 chr1 30987493 30987705 -166207727 - L1MA5A LINE L1 -400 5900 5666 7 821 632 357 52 43 chr1 30987718 30988233 -166207199 + LTR33C LTR ERVL 88 607 -22 7 821 204 40 0 0 chr1 30988560 30988585 -166206847 + (CTG)n Simple_repeat Simple_repeat 1 25 0 7 821 239 181 24 143 chr1 30988585 30988658 -166206774 - B1F SINE Alu -7 142 76 7 821 378 0 0 0 chr1 30989134 30989176 -166206256 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 821 438 245 11 0 chr1 30989177 30989271 -166206161 + PB1D10 SINE Alu 11 105 -12 7 821 1349 206 23 23 chr1 30989291 30989594 -166205838 + Lx7 LINE L1 6771 7073 -623 7 821 43 20 0 0 chr1 30989981 30990031 -166205401 + AT_rich Low_complexity Low_complexity 1 50 0 7 821 500 259 136 48 chr1 30990205 30990477 -166204955 + L1MA7 LINE L1 5989 6284 -7 7 821 242 310 35 26 chr1 30990673 30990789 -166204643 - PB1D7 SINE Alu -3 117 1 7 821 308 299 137 0 chr1 30990850 30990967 -166204465 + RSINE1 SINE B4 26 158 -7 7 821 274 358 55 25 chr1 30991417 30991619 -166203813 - MLT1F1 LTR MaLR -238 322 116 7 821 399 221 205 0 chr1 30992874 30993001 -166202431 + MER5A DNA MER1_type 1 153 -36 7 821 353 171 168 19 chr1 30994678 30994785 -166200647 + ID_B1 SINE B4 97 219 -5 7 821 425 278 150 86 chr1 30994888 30995105 -166200327 - MTD LTR MaLR -111 308 68 7 821 1229 54 0 0 chr1 30995105 30995252 -166200180 - B1_Mus2 SINE Alu 0 147 1 7 821 245 278 150 94 chr1 30995252 30995294 -166200138 - MTD LTR MaLR -354 67 39 7 821 3333 129 56 37 chr1 30995346 30996083 -166199349 - RMER17A LTR ERVK 0 751 1 7 821 2877 34 45 11 chr1 30996148 30996504 -166198928 + L1Md_A LINE L1 6215 6582 0 7 821 336 283 47 9 chr1 30996789 30996896 -166198536 - PB1D9 SINE Alu -9 111 1 7 821 328 246 270 6 chr1 30997787 30997880 -166197552 - ID_B1 SINE B4 -8 216 16 7 821 237 325 52 0 chr1 30997880 30997946 -166197486 - BC1_Mm scRNA scRNA -71 81 16 7 821 198 0 0 0 chr1 30997946 30997968 -166197464 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 821 26 0 0 0 chr1 30999473 30999499 -166195933 + AT_rich Low_complexity Low_complexity 1 26 0 7 821 210 269 132 15 chr1 31000503 31000571 -166194861 + B4A SINE B4 6 81 -211 1 821 618 234 69 6 chr1 31000513 31000672 -166194760 + B3 SINE B2 24 192 -24 2 821 413 178 11 22 chr1 31001256 31001348 -166194084 + URR1B DNA MER1_type 133 223 -2 3 821 201 82 61 0 chr1 31003057 31003106 -166192326 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 4 821 207 0 0 0 chr1 31003977 31004000 -166191432 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 821 213 65 0 0 chr1 31004878 31004909 -166190523 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 821 302 143 16 0 chr1 31005123 31005186 -166190246 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 821 216 0 0 0 chr1 31005522 31005546 -166189886 + (A)n Simple_repeat Simple_repeat 1 24 0 8 821 25 0 0 0 chr1 31005770 31005795 -166189637 + AT_rich Low_complexity Low_complexity 1 25 0 9 821 30 59 0 0 chr1 31006157 31006208 -166189224 + GC_rich Low_complexity Low_complexity 1 51 0 1 821 288 221 13 0 chr1 31006446 31006523 -166188909 + (CGG)n Simple_repeat Simple_repeat 2 79 0 1 821 315 0 0 0 chr1 31009400 31009435 -166185997 + (T)n Simple_repeat Simple_repeat 1 35 0 1 821 244 268 109 8 chr1 31009536 31009676 -166185756 + B3 SINE B2 20 176 -19 1 821 255 228 45 68 chr1 31009691 31009823 -166185609 + BC1_Mm scRNA scRNA 6 134 -18 1 821 459 319 44 0 chr1 31010099 31010234 -166185198 - ID_B1 SINE B4 -2 222 82 1 821 809 56 0 0 chr1 31010533 31010640 -166184792 - B1_Mus1 SINE Alu -31 117 11 1 821 504 183 151 0 chr1 31011415 31011508 -166183924 - PB1D9 SINE Alu -5 115 9 1 821 291 213 24 118 chr1 31011434 31011519 -166183913 - MT2B LTR ERVL -364 237 161 1 821 231 258 61 0 chr1 31011855 31011921 -166183511 + B1F1 SINE Alu 5 75 -73 1 821 324 252 16 119 chr1 31012930 31012984 -166182448 + PB1D9 SINE Alu 1 49 -71 2 821 1083 60 0 0 chr1 31012984 31013118 -166182314 + B1_Mus2 SINE Alu 2 135 -12 2 821 597 72 0 0 chr1 31013122 31013205 -166182227 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 821 324 252 16 119 chr1 31013205 31013271 -166182161 + PB1D9 SINE Alu 50 111 -9 2 821 529 261 0 0 chr1 31014180 31014291 -166181141 + B1_Mur1 SINE Alu 19 129 -20 2 821 393 176 46 23 chr1 31014962 31015049 -166180383 - B1_Mus1 SINE Alu -37 111 23 2 821 180 184 0 0 chr1 31015103 31015152 -166180280 + A-rich Low_complexity Low_complexity 1 49 0 2 821 214 366 0 0 chr1 31015266 31015337 -166180095 - ID4 SINE ID -11 72 2 2 821 887 128 15 0 chr1 31015436 31015569 -166179863 + B1_Mus2 SINE Alu 2 136 -11 2 821 248 0 0 30 chr1 31015569 31015602 -166179830 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 821 226 231 149 30 chr1 31015724 31015791 -166179641 - B1F1 SINE Alu -1 148 74 2 821 23394 62 1 14 chr1 31015791 31019771 -166175661 - L1Md_A LINE L1 -1521 4362 441 3 821 2510 136 2 116 chr1 31019770 31020056 -166175376 - L1_Mus4 LINE L1 -562 6074 5791 3 821 1110 116 9 113 chr1 31020056 31020105 -166175327 - B2_Mm1t SINE B2 -1 192 149 3 821 1056 84 42 0 chr1 31020105 31020247 -166175185 + B1_Mus1 SINE Alu 1 148 0 3 821 1110 116 9 113 chr1 31020247 31020410 -166175022 - B2_Mm1t SINE B2 -45 148 2 3 821 2510 136 2 116 chr1 31020410 31020462 -166174970 - L1_Mus4 LINE L1 -846 5790 5790 3 821 1018 104 0 0 chr1 31020462 31020596 -166174836 - B1_Mus2 SINE Alu -12 135 2 3 821 5457 145 7 118 chr1 31020596 31020882 -166174550 - L1_Mus4 LINE L1 -87 5796 5516 3 821 4326 17 0 0 chr1 31020882 31021364 -166174068 - LTRIS_Mm LTR ERV1 0 482 1 3 821 5457 171 20 122 chr1 31021364 31021544 -166173888 - L1_Mus4 LINE L1 -368 5515 5359 3 821 1366 40 11 0 chr1 31021544 31021721 -166173711 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 3 821 836 71 0 0 chr1 31021723 31021835 -166173597 - B1_Mm SINE Alu -35 112 1 3 821 5457 171 20 122 chr1 31021835 31022777 -166172655 - L1_Mus4 LINE L1 -525 5356 4430 3 821 7478 103 136 2 chr1 31022783 31024867 -166170565 - L1Md_F2 LINE L1 0 6582 3862 3 821 420 20 0 0 chr1 31024867 31024916 -166170516 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 821 3644 199 434 3 chr1 31024916 31025102 -166170330 - L1Md_F2 LINE L1 -2019 3861 3667 3 821 29812 110 17 12 chr1 31025130 31030758 -166164674 + L1_Mus1 LINE L1 504 6107 -460 4 821 1811 151 82 33 chr1 31030758 31031148 -166164284 + RLTR9E LTR ERVK 1 409 0 4 821 6742 73 16 18 chr1 31031148 31031600 -166163832 + L1_Mus1 LINE L1 6108 6555 -12 4 821 10691 133 37 9 chr1 31031656 31033680 -166161752 - MusHAL1 LINE L1 -281 2431 352 4 821 222 91 0 0 chr1 31033901 31033934 -166161498 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 4 821 204 40 0 0 chr1 31034157 31034182 -166161250 + (CTG)n Simple_repeat Simple_repeat 2 26 0 4 821 390 313 0 0 chr1 31035365 31035464 -166159968 + B1_Mur1 SINE Alu 19 117 -32 4 821 270 0 0 0 chr1 31036077 31036107 -166159325 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 821 311 206 27 14 chr1 31036113 31036187 -166159245 - B1_Mus1 SINE Alu -40 108 34 4 821 201 222 0 36 chr1 31036248 31036304 -166159128 + A-rich Low_complexity Low_complexity 5 58 0 4 821 184 259 0 79 chr1 31036312 31036375 -166159057 - L2c LINE L2 -173 3214 3157 5 821 269 268 0 0 chr1 31036401 31036457 -166158975 - ID4 SINE ID -11 72 17 5 821 324 64 0 0 chr1 31036664 31036711 -166158721 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 821 242 330 28 46 chr1 31036737 31036845 -166158587 - B1F SINE Alu -43 106 1 5 821 970 228 205 128 chr1 31036908 31037401 -166158031 - MT2B LTR ERVL 0 601 3 5 821 188 225 181 14 chr1 31037518 31037535 -166157897 + L2a LINE L2 3334 3350 -76 5 821 309 260 78 8 chr1 31037535 31037663 -166157769 - B1_Mur1 SINE Alu -11 138 2 5 821 188 225 181 14 chr1 31037663 31037717 -166157715 + L2a LINE L2 3351 3417 -9 5 821 5670 141 33 10 chr1 31038107 31038913 -166156519 - L1_Mus4 LINE L1 -7 6629 5798 5 821 1199 124 16 0 chr1 31038913 31039098 -166156334 - B2_Mm1t SINE B2 -3 190 3 5 821 5670 173 21 16 chr1 31039098 31039646 -166155786 - L1_Mus4 LINE L1 -86 5797 5246 5 821 12090 196 34 11 chr1 31039646 31042642 -166152790 - L1_Mur1 LINE L1 -1265 4621 1555 5 821 210 105 0 0 chr1 31042879 31042917 -166152515 + (CAGAGA)n Simple_repeat Simple_repeat 4 41 0 6 821 303 28 0 0 chr1 31043131 31043167 -166152265 + (CTG)n Simple_repeat Simple_repeat 2 37 0 6 821 230 298 36 114 chr1 31044306 31044446 -166150986 + MT2B LTR ERVL 136 264 -337 6 821 403 317 8 24 chr1 31044350 31044476 -166150956 + B1_Mur1 SINE Alu 19 142 -7 6 821 323 228 32 11 chr1 31045078 31045171 -166150261 - B1_Mm SINE Alu -18 129 35 6 821 263 324 0 0 chr1 31045378 31045449 -166149983 - ID4 SINE ID -11 72 2 6 821 270 274 98 56 chr1 31045643 31045786 -166149646 - B1_Mur2 SINE Alu 0 149 1 6 821 862 216 207 134 chr1 31045851 31046343 -166149089 - MT2A LTR ERVL -3 530 3 6 821 295 244 95 44 chr1 31046456 31046593 -166148839 - B1_Mur1 SINE Alu -1 148 5 6 821 184 109 43 21 chr1 31046696 31046714 -166148718 + polypyrimidine Low_complexity Low_complexity 33 50 0 6 821 985 145 0 11 chr1 31046714 31046895 -166148537 + CT-rich Low_complexity Low_complexity 2 180 0 7 821 184 109 43 21 chr1 31046895 31046923 -166148509 + polypyrimidine Low_complexity Low_complexity 4 32 0 7 821 709 164 17 17 chr1 31046925 31047105 -166148327 + CT-rich Low_complexity Low_complexity 1 180 0 7 821 481 300 0 9 chr1 31047105 31047216 -166148216 - PB1D9 SINE Alu -6 114 5 7 821 423 190 0 23 chr1 31047236 31047322 -166148110 - B1_Mur3 SINE Alu 0 149 66 7 821 275 311 103 10 chr1 31047331 31047623 -166147809 + L1MC4 LINE L1 7258 7576 -466 7 821 392 318 9 0 chr1 31047658 31047768 -166147664 + ID_B1 SINE B4 106 216 -8 7 821 326 292 21 42 chr1 31047992 31048135 -166147297 + L1MC4 LINE L1 7868 8007 -35 7 821 2024 132 24 2 chr1 31048151 31048596 -166146836 + L1_Mur1 LINE L1 2795 3287 -2599 7 821 2003 262 4 27 chr1 31048713 31049128 -166146304 + MurERV4-int LTR ERVK 2652 3058 -2202 7 821 1213 126 6 0 chr1 31049128 31049311 -166146121 + B2_Mm1a SINE B2 2 185 -8 7 821 2003 262 4 27 chr1 31049311 31049444 -166145988 + MurERV4-int LTR ERVK 3059 3187 -2073 7 821 1173 68 7 0 chr1 31049470 31049617 -166145815 - B1_Mus1 SINE Alu 0 148 1 8 821 240 59 0 0 chr1 31049679 31049713 -166145719 + (A)n Simple_repeat Simple_repeat 1 34 0 8 821 1120 224 8 0 chr1 31049714 31049960 -166145472 + MYSERV6-int LTR ERVK 2683 2930 -6029 8 821 2412 67 6 0 chr1 31049960 31050276 -166145156 - MTA_Mm LTR MaLR 0 396 79 8 821 541 238 33 43 chr1 31050280 31050491 -166144941 + RMER3D-int LTR ERVK 2634 2842 0 8 821 1633 216 102 2 chr1 31050491 31050895 -166144537 + BGLII_A LTR ERVK 1 444 -1 8 821 310 185 0 0 chr1 31051272 31051326 -166144106 + MTC LTR MaLR 140 193 -228 8 821 1667 26 0 0 chr1 31051332 31051524 -166143908 - B2_Mm1a SINE B2 0 193 2 8 821 526 190 30 10 chr1 31051524 31051625 -166143807 + PB1D9 SINE Alu 11 113 -7 8 821 470 290 24 0 chr1 31052297 31052421 -166143011 + RSINE1 SINE B4 8 134 -31 8 821 4418 106 0 2 chr1 31052466 31053092 -166142340 + L1Md_F2 LINE L1 5956 6580 -2 8 821 21 36 0 0 chr1 31053166 31053194 -166142238 + AT_rich Low_complexity Low_complexity 1 28 0 9 821 230 220 48 63 chr1 31053205 31053268 -166142164 + 4.5SRNA scRNA scRNA 25 86 -8 9 821 421 200 116 0 chr1 31053220 31053315 -166142117 + B1_Mur2 SINE Alu 43 148 -1 9 821 43 20 0 0 chr1 31053806 31053856 -166141576 + AT_rich Low_complexity Low_complexity 1 50 0 9 821 203 61 0 83 chr1 31054122 31054158 -166141274 + (TTTTTG)n Simple_repeat Simple_repeat 6 38 0 9 821 1025 128 0 0 chr1 31054158 31054306 -166141126 - B1_Mus1 SINE Alu 0 148 1 9 821 297 89 0 0 chr1 31054829 31054874 -166140558 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 9 821 249 33 0 0 chr1 31055089 31055119 -166140313 + (CTG)n Simple_repeat Simple_repeat 2 31 0 9 821 420 293 0 0 chr1 31056305 31056404 -166139028 + B1_Mur1 SINE Alu 19 117 -32 9 821 243 0 0 0 chr1 31057014 31057041 -166138391 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 9 821 332 181 40 27 chr1 31057047 31057121 -166138311 - B1_Mus1 SINE Alu -40 108 34 1 821 182 259 0 79 chr1 31057245 31057308 -166138124 - L2c LINE L2 -173 3214 3157 1 821 272 268 0 0 chr1 31057334 31057390 -166138042 - ID4 SINE ID -11 72 17 1 821 246 32 0 0 chr1 31057597 31057628 -166137804 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 821 261 301 91 49 chr1 31057630 31057773 -166137659 - B1F SINE Alu 0 149 1 1 821 1016 271 235 20 chr1 31057836 31058329 -166137103 - MT2B LTR ERVL 0 601 3 1 821 441 226 71 28 chr1 31058447 31058588 -166136844 - B1_Mur1 SINE Alu -1 148 2 1 821 209 179 0 0 chr1 31058700 31058739 -166136693 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 821 6186 138 33 10 chr1 31059037 31059842 -166135590 - L1_Mus4 LINE L1 -8 6628 5798 1 821 1301 124 16 0 chr1 31059842 31060028 -166135404 - B2_Mm1t SINE B2 -2 191 3 1 821 6186 171 21 16 chr1 31060028 31060579 -166134853 - L1_Mus4 LINE L1 -86 5797 5243 1 821 6849 183 34 4 chr1 31060582 31061942 -166133490 - L1_Mur2 LINE L1 -1271 4606 3206 1 821 2612 96 164 2 chr1 31061942 31062351 -166133081 + IAPLTR2_Mm LTR ERVK 1 475 0 1 821 4216 87 18 28 chr1 31062353 31063092 -166132340 + IAPEz-int LTR ERVK 3 662 -5819 1 821 2229 72 0 0 chr1 31063092 31063370 -166132062 + IAPEz-int LTR ERVK 1359 1636 -4845 1 102 6201 34 11 19 chr1 31063369 31064119 -166131313 + IAPEz-int LTR ERVK 5736 6479 -2 1 822 2733 93 127 14 chr1 31064121 31064548 -166130884 + IAPLTR2_Mm LTR ERVK 1 475 0 1 822 9378 128 25 41 chr1 31064548 31066237 -166129195 - MusHAL1 LINE L1 -699 2013 352 1 822 650 79 0 19 chr1 31066456 31066559 -166128873 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 1 822 2553 122 107 0 chr1 31066630 31067071 -166128361 + MusHAL1 LINE L1 1593 2080 -632 1 822 23 0 0 0 chr1 31067140 31067163 -166128269 + AT_rich Low_complexity Low_complexity 1 23 0 1 822 657 282 26 0 chr1 31067982 31068138 -166127294 - ID_B1 SINE B4 -12 212 53 1 822 282 228 38 0 chr1 31068441 31068520 -166126912 - MER2 DNA MER2_type -150 195 114 1 822 22 0 0 0 chr1 31068581 31068603 -166126829 + AT_rich Low_complexity Low_complexity 1 22 0 1 822 676 171 122 15 chr1 31068706 31068837 -166126595 - B1_Mur2 SINE Alu -2 147 3 1 822 657 242 8 0 chr1 31069010 31069138 -166126294 + B1_Mur2 SINE Alu 1 129 -20 1 822 231 291 24 71 chr1 31069279 31069405 -166126027 - L1M LINE L1 -592 5602 5483 1 822 241 270 43 53 chr1 31069451 31069545 -166125887 - L1M LINE L1 -711 5413 5321 1 822 345 274 48 0 chr1 31070082 31070166 -166125266 - ID_B1 SINE B4 -5 219 132 1 822 909 110 0 0 chr1 31070418 31070554 -166124878 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 1 822 194 319 43 0 chr1 31071280 31071349 -166124083 - MER5B DNA MER1_type -32 146 75 1 822 350 281 103 0 chr1 31071681 31071827 -166123605 - MER2 DNA MER2_type -85 260 100 1 822 637 276 0 27 chr1 31072659 31072808 -166122624 - B1_Mur2 SINE Alu -4 145 1 1 822 243 0 0 0 chr1 31073840 31073867 -166121565 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 822 410 226 85 11 chr1 31073869 31073963 -166121469 - PB1D10 SINE Alu -7 110 10 1 822 21 0 0 0 chr1 31074036 31074057 -166121375 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 348 127 0 0 chr1 31074095 31074150 -166121282 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 822 503 277 35 28 chr1 31074163 31074304 -166121128 - RSINE1 SINE B4 -12 153 12 1 822 423 0 0 0 chr1 31074754 31074801 -166120631 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 822 1263 75 0 0 chr1 31074813 31074960 -166120472 - B1_Mus1 SINE Alu -1 147 1 1 822 543 256 8 0 chr1 31075121 31075231 -166120201 - B1F SINE Alu -2 118 1 1 822 235 229 113 16 chr1 31075787 31075849 -166119583 - ID4 SINE ID -13 70 3 1 822 366 168 41 40 chr1 31075858 31075962 -166119470 - PB1D10 SINE Alu -2 125 12 1 822 253 177 0 33 chr1 31076766 31076824 -166118608 - PB1D9 SINE Alu -83 66 13 1 822 229 301 60 66 chr1 31076845 31077012 -166118420 + ORR1E LTR MaLR 77 242 -117 1 822 474 18 0 0 chr1 31078124 31078179 -166117253 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 822 243 322 180 6 chr1 31078604 31078776 -166116656 - LTR50 LTR ERVL -589 206 5 1 822 332 113 0 31 chr1 31078964 31079028 -166116404 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 1 822 353 312 7 84 chr1 31079093 31079247 -166116185 - B4A SINE B4 0 292 151 1 822 1623 113 87 160 chr1 31079274 31079313 -166116119 - ORR1A2 LTR MaLR 0 346 310 1 822 3405 67 0 5 chr1 31079313 31079731 -166115701 + L1Md_F2 LINE L1 6167 6582 0 1 822 1623 113 87 160 chr1 31079731 31079789 -166115643 - ORR1A2 LTR MaLR -37 309 306 1 822 1401 96 17 0 chr1 31079789 31079967 -166115465 - B2_Mm2 SINE B2 -14 181 1 1 822 1805 108 45 1 chr1 31079967 31080237 -166115195 - ORR1A2 LTR MaLR -41 305 5 1 822 3802 109 9 9 chr1 31080241 31080811 -166114621 - ORR1A2-int LTR MaLR 0 1963 1394 1 822 3827 98 9 26 chr1 31080811 31081388 -166114044 - RMER2 LTR ERV1 0 567 1 1 822 4535 168 85 182 chr1 31081388 31082939 -166112493 - ORR1A2-int LTR MaLR -564 1399 1 1 822 2060 139 9 0 chr1 31082943 31083259 -166112173 - ORR1A2 LTR MaLR -8 319 1 1 822 326 281 134 0 chr1 31083464 31083546 -166111886 + B1F2 SINE Alu 30 122 -27 1 822 209 355 64 37 chr1 31083605 31083792 -166111640 + L4 LINE RTE 1628 1819 -210 1 822 921 109 7 0 chr1 31083829 31083966 -166111466 - B1_Mus2 SINE Alu 0 147 10 1 822 37 39 0 0 chr1 31083987 31084038 -166111394 + AT_rich Low_complexity Low_complexity 1 51 0 1 822 342 326 32 70 chr1 31084336 31084494 -166110938 - RSINE1 SINE B4 -10 155 4 1 822 3164 94 2 0 chr1 31084774 31085169 -166110263 + MTA_Mm LTR MaLR 1 396 0 1 822 610 292 10 53 chr1 31085798 31086004 -166109428 - B3A SINE B2 0 198 2 1 822 722 240 52 17 chr1 31086081 31086255 -166109177 + MTD LTR MaLR 25 204 -215 1 822 3131 72 25 15 chr1 31086293 31086689 -166108743 + MTB LTR MaLR 1 400 0 1 822 9103 4 0 0 chr1 31086989 31087977 -166107455 - L1Md_T LINE L1 -2 6580 5593 1 822 808 204 86 27 chr1 31088150 31088336 -166107096 + MTD LTR MaLR 203 399 -20 1 822 252 274 0 52 chr1 31088496 31088573 -166106859 + MTB_Mm LTR MaLR 142 214 -193 1 822 207 0 0 0 chr1 31088608 31088631 -166106801 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 822 211 47 44 44 chr1 31089062 31089107 -166106325 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 1 822 873 171 14 7 chr1 31089112 31089259 -166106173 - B1_Mur1 SINE Alu -1 148 1 1 822 483 265 144 8 chr1 31089649 31089767 -166105665 + RSINE1 SINE B4 4 137 -28 1 822 237 216 0 0 chr1 31089774 31089825 -166105607 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 822 218 219 0 15 chr1 31090150 31090215 -166105217 + GA-rich Low_complexity Low_complexity 1 64 0 1 822 420 200 282 0 chr1 31091122 31091232 -166104200 - B1_Mur4 SINE Alu -7 143 3 1 822 240 149 0 0 chr1 31091445 31091492 -166103940 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 822 725 111 4 1 chr1 31091674 31091788 -166103644 + MTC LTR MaLR 1 117 -279 1 822 1169 170 0 5 chr1 31091795 31091996 -166103436 + MTC LTR MaLR 222 421 0 1 822 351 0 0 0 chr1 31092150 31092189 -166103243 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1 822 297 214 216 35 chr1 31092630 31092746 -166102686 - MIRc SINE MIR -109 159 23 1 822 234 0 0 0 chr1 31093417 31093443 -166101989 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 822 432 275 33 0 chr1 31093524 31093644 -166101788 - B1F SINE Alu -8 141 18 1 822 1687 199 45 70 chr1 31094190 31094491 -166100941 - MTD LTR MaLR -14 405 121 1 822 1337 94 61 0 chr1 31094491 31094672 -166100760 + B2_Mm2 SINE B2 1 192 -3 1 822 1687 198 46 72 chr1 31094672 31094797 -166100635 - MTD LTR MaLR -299 120 3 1 822 234 0 0 0 chr1 31094855 31094881 -166100551 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 822 3693 142 126 10 chr1 31095047 31095667 -166099765 + RLTR17 LTR ERVK 1 692 0 1 822 548 205 0 7 chr1 31095892 31096044 -166099388 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 822 22 0 0 0 chr1 31096073 31096095 -166099337 + AT_rich Low_complexity Low_complexity 1 22 0 1 822 549 172 0 0 chr1 31096156 31096249 -166099183 + RMER6C LTR ERVK 2 94 -626 1 822 409 108 15 30 chr1 31096248 31096315 -166099117 + MT2B LTR ERVL 194 259 -342 1 822 1128 90 7 0 chr1 31096333 31096478 -166098954 + B1_Mus2 SINE Alu 2 147 0 1 822 242 162 0 0 chr1 31096516 31096553 -166098879 + B1_Mus2 SINE Alu 5 41 -106 1 822 423 0 0 0 chr1 31096553 31096600 -166098832 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 822 1663 139 53 42 chr1 31096622 31096959 -166098473 + RMER6C LTR ERVK 347 687 -3 1 822 280 273 119 40 chr1 31096966 31097092 -166098340 - MIRb SINE MIR -53 215 80 1 822 562 281 28 14 chr1 31097255 31097396 -166098036 - RSINE1 SINE B4 -2 163 21 1 822 299 319 162 40 chr1 31097806 31098028 -166097404 - MLT1L LTR MaLR -2 608 360 1 822 3573 55 0 0 chr1 31098910 31099327 -166096105 + L1Md_T LINE L1 6166 6582 0 1 822 303 289 109 55 chr1 31100211 31100394 -166095038 + MIR3 SINE MIR 10 202 -6 1 822 21 0 0 0 chr1 31100775 31100796 -166094636 + AT_rich Low_complexity Low_complexity 1 21 0 1 822 236 302 0 0 chr1 31100811 31100864 -166094568 - RSINE1 SINE B4 -29 136 84 1 822 210 105 0 0 chr1 31101265 31101303 -166094129 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 1 822 373 269 84 28 chr1 31101303 31101399 -166094033 - B3A SINE B2 -26 172 70 1 822 21 36 0 0 chr1 31101875 31101903 -166093529 + AT_rich Low_complexity Low_complexity 1 28 0 1 822 381 352 47 20 chr1 31102355 31102503 -166092929 + RSINE1 SINE B4 13 164 -1 1 822 413 146 52 13 chr1 31102508 31102661 -166092771 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 822 368 247 26 0 chr1 31102674 31102828 -166092604 + (CA)n Simple_repeat Simple_repeat 1 158 0 1 822 3300 66 2 8 chr1 31103833 31104231 -166091201 - MTA_Mm LTR MaLR 0 396 1 1 822 1819 131 50 11 chr1 31104429 31104707 -166090725 + Lx4A LINE L1 6763 7051 -7 1 822 198 103 0 0 chr1 31104921 31104950 -166090482 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 822 1187 186 33 0 chr1 31105142 31105357 -166090075 + URR1B DNA MER1_type 1 222 -3 1 822 275 103 7 24 chr1 31105643 31105690 -166089742 - PB1D10 SINE Alu -26 94 46 1 822 612 277 96 6 chr1 31105815 31105982 -166089450 - B3A SINE B2 -16 182 1 1 822 714 289 15 124 chr1 31106125 31106390 -166089042 - B4A SINE B4 -51 241 6 2 822 224 311 58 16 chr1 31106536 31106657 -166088775 + MIRb SINE MIR 143 268 0 2 822 25 31 0 0 chr1 31106691 31106723 -166088709 + AT_rich Low_complexity Low_complexity 1 32 0 2 822 936 255 72 24 chr1 31109390 31109639 -166085793 + MLT2B2 LTR ERVL 40 300 -215 2 822 749 203 58 17 chr1 31109680 31109958 -166085474 - ORR1D1 LTR MaLR -3 371 1 2 822 227 316 18 0 chr1 31109970 31110027 -166085405 + MLT2B2 LTR ERVL 418 475 -92 2 822 1019 58 40 0 chr1 31110070 31110243 -166085189 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 822 1786 168 122 22 chr1 31110290 31110650 -166084782 - Lx5 LINE L1 -1 7049 6654 2 822 536 130 11 0 chr1 31111109 31111201 -166084231 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 822 449 258 0 0 chr1 31111206 31111295 -166084137 - RSINE1 SINE B4 -28 137 49 2 822 711 165 71 0 chr1 31111344 31111471 -166083961 - B1_Mur1 SINE Alu -13 136 1 2 822 195 42 0 0 chr1 31111550 31111574 -166083858 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 822 231 211 0 37 chr1 31111895 31111949 -166083483 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2 822 698 321 12 12 chr1 31112086 31112256 -166083176 - B4 SINE B4 0 292 123 2 822 207 0 0 0 chr1 31112404 31112427 -166083005 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 822 1271 241 27 30 chr1 31112436 31112912 -166082520 - Lx7 LINE L1 -318 7378 6768 2 822 274 298 0 35 chr1 31112922 31113009 -166082423 - B4 SINE B4 -207 85 2 2 822 852 145 72 7 chr1 31113099 31113238 -166082194 + B1_Mur4 SINE Alu 1 148 -2 2 822 213 250 0 0 chr1 31113238 31113276 -166082156 + polypurine Low_complexity Low_complexity 6 43 0 2 822 472 310 20 134 chr1 31113278 31113479 -166081953 + B3A SINE B2 8 198 0 2 822 208 235 48 24 chr1 31113676 31113759 -166081673 + (TATG)n Simple_repeat Simple_repeat 2 86 0 2 822 213 39 0 0 chr1 31113770 31113796 -166081636 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 822 322 358 73 17 chr1 31113811 31113990 -166081442 - B4A SINE B4 -16 276 88 2 822 489 229 83 25 chr1 31114691 31114812 -166080620 - ID_B1 SINE B4 -4 220 93 2 822 237 139 0 0 chr1 31114880 31114923 -166080509 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 822 313 247 82 0 chr1 31114959 31115044 -166080388 - PB1D10 SINE Alu -17 100 9 2 822 190 255 111 50 chr1 31116449 31116548 -166078884 - MER5A DNA MER1_type -10 179 75 2 822 1426 88 5 35 chr1 31116906 31117107 -166078325 + B2_Mm2 SINE B2 1 195 0 2 822 1221 57 0 0 chr1 31117108 31117248 -166078184 + B1_Mus1 SINE Alu 1 140 -8 2 822 333 0 0 0 chr1 31117248 31117285 -166078147 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 822 507 276 8 16 chr1 31117946 31118075 -166077357 - Lx8 LINE L1 -297 7176 7049 2 822 1105 307 103 70 chr1 31118086 31119077 -166076355 - Lx8 LINE L1 -1159 6314 5217 2 822 1301 48 0 0 chr1 31119077 31119224 -166076208 - B1_Mus1 SINE Alu 0 148 2 2 822 315 0 0 0 chr1 31119224 31119259 -166076173 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 822 1105 302 116 72 chr1 31119259 31119752 -166075680 - Lx8 LINE L1 -631 5216 4762 2 822 295 41 0 39 chr1 31119752 31119803 -166075629 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 822 1105 302 116 72 chr1 31119803 31119882 -166075550 - Lx8 LINE L1 -1086 4761 4671 2 822 755 279 66 41 chr1 31119879 31120242 -166075190 - L1_Mur3 LINE L1 -1400 4480 4109 2 822 627 167 0 0 chr1 31120355 31120457 -166074975 - ORR1B1 LTR MaLR -292 102 1 2 822 206 244 0 0 chr1 31120536 31120577 -166074855 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 2 822 731 225 118 9 chr1 31120961 31121172 -166074260 + MLT1B LTR MaLR 82 315 -75 2 822 329 219 68 0 chr1 31121466 31121539 -166073893 + MLT1B LTR MaLR 304 381 -9 2 822 257 273 130 16 chr1 31122061 31122184 -166073248 + LTR16A LTR ERVL 2 138 -313 2 822 181 330 175 0 chr1 31123206 31123303 -166072129 + L2a LINE L2 3299 3412 -14 2 822 380 290 8 68 chr1 31123326 31123459 -166071973 + MER2B DNA MER2_type 172 296 -40 2 822 2542 132 11 6 chr1 31123633 31123998 -166071434 + ORR1B2 LTR MaLR 1 367 0 2 822 7879 169 68 6 chr1 31123998 31125418 -166070014 + ORR1B2-int LTR MaLR 1 1508 -1 2 822 2046 124 139 3 chr1 31125419 31125742 -166069690 + ORR1B2 LTR MaLR 1 367 0 2 822 4032 35 39 0 chr1 31126106 31126391 -166069041 + MT2C_Mm LTR ERVL 1 285 -190 2 822 354 23 0 0 chr1 31126391 31126434 -166068998 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 822 4032 35 39 0 chr1 31126434 31126605 -166068827 + MT2C_Mm LTR ERVL 286 473 -2 2 822 2767 75 94 18 chr1 31126822 31127214 -166068218 - L1_Mus4 LINE L1 -7 6629 6208 2 822 230 291 120 0 chr1 31127390 31127507 -166067925 - L1MB5 LINE L1 -122 6052 5922 2 822 251 258 0 16 chr1 31127746 31127809 -166067623 + GA-rich Low_complexity Low_complexity 3 64 0 2 822 5934 20 0 3 chr1 31128515 31129160 -166066272 + L1Md_A LINE L1 5940 6582 0 2 822 314 339 89 79 chr1 31129298 31129516 -166065916 + MLT1H1 LTR MaLR 24 289 -290 2 822 1146 101 0 20 chr1 31130428 31130579 -166064853 - B1_Mus1 SINE Alu 0 148 1 2 822 1241 208 80 16 chr1 31130582 31130895 -166064537 - Lx9 LINE L1 -161 7483 7151 2 822 293 140 0 17 chr1 31130895 31130953 -166064479 + C-rich Low_complexity Low_complexity 3 59 0 2 822 931 100 13 0 chr1 31130953 31131103 -166064329 + (TTCC)n Simple_repeat Simple_repeat 3 154 0 2 822 784 159 24 0 chr1 31131103 31131229 -166064203 - B1_Mur4 SINE Alu -10 140 12 2 822 431 273 20 59 chr1 31131229 31131255 -166064177 - ID_B1 SINE B4 -10 214 69 2 822 816 11 0 0 chr1 31131261 31131354 -166064078 + (TTC)n Simple_repeat Simple_repeat 2 94 0 2 822 804 235 50 10 chr1 31131406 31131604 -166063828 + B3 SINE B2 6 211 -5 2 822 275 87 130 0 chr1 31131668 31131714 -166063718 + Lx9 LINE L1 7027 7078 -566 2 822 650 264 14 0 chr1 31131720 31131860 -166063572 - B3A SINE B2 -55 143 2 2 822 36133 37 1 0 chr1 31131965 31137813 -166057619 + L1Md_T LINE L1 1 5589 -297 2 822 9590 5 0 0 chr1 31137813 31138809 -166056623 + L1Md_T LINE L1 5590 6585 0 2 822 502 330 72 42 chr1 31139348 31139585 -166055847 - MLT1A LTR MaLR -100 274 31 2 822 250 200 0 0 chr1 31139976 31140026 -166055406 + ID4 SINE ID 3 52 -31 2 822 869 266 114 25 chr1 31140503 31140861 -166054571 + MLT1B LTR MaLR 1 390 0 2 822 302 291 171 14 chr1 31140865 31141081 -166054351 + L4 LINE RTE 1780 2029 0 2 822 646 350 94 64 chr1 31141116 31141316 -166054116 + L2 LINE L2 2153 2343 -1076 2 822 299 85 21 0 chr1 31141316 31141363 -166054069 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 2 822 646 350 94 64 chr1 31141363 31142020 -166053412 + L2 LINE L2 2344 3035 -384 2 822 366 331 61 37 chr1 31142177 31142503 -166052929 - MER63D DNA AcHobo -621 440 107 2 822 469 357 7 0 chr1 31142506 31142646 -166052786 - RSINE1 SINE B4 -18 147 7 2 822 498 277 67 11 chr1 31143048 31143185 -166052247 + B3A SINE B2 3 146 -52 2 822 450 178 0 0 chr1 31143234 31143324 -166052108 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 822 225 119 89 0 chr1 31143540 31143641 -166051791 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 822 200 255 179 11 chr1 31144063 31144158 -166051274 - MIRm SINE MIR -125 151 41 2 822 282 252 52 9 chr1 31144196 31144312 -166051120 - L1MC5 LINE L1 -45 7916 7796 2 822 558 250 92 23 chr1 31144799 31144930 -166050502 + B1F2 SINE Alu 1 140 -9 2 822 207 250 0 0 chr1 31145723 31145767 -166049665 + (CAGG)n Simple_repeat Simple_repeat 2 45 0 2 822 2421 164 44 24 chr1 31145896 31146309 -166049123 + MTC LTR MaLR 1 421 0 2 822 230 312 0 0 chr1 31147072 31147136 -166048296 + LTR88c LTR Genie? 21 84 -778 2 822 6589 99 3 21 chr1 31147166 31148077 -166047355 + L1_Mus3 LINE L1 5742 6636 -2 2 822 264 59 0 0 chr1 31148195 31148229 -166047203 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 822 754 297 49 42 chr1 31149277 31149565 -166045867 - B4A SINE B4 0 292 3 2 822 1129 231 60 4 chr1 31149731 31149979 -166045453 - MTE2b LTR MaLR -74 305 44 2 822 488 268 56 20 chr1 31150173 31150361 -166045071 - L1MA5 LINE L1 -3 6297 6102 2 822 183 80 0 0 chr1 31150361 31150386 -166045046 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2 822 281 308 164 0 chr1 31151120 31151224 -166044208 + ID_B1 SINE B4 82 202 -22 2 822 237 257 50 75 chr1 31151931 31152011 -166043421 - LTR88c LTR Genie? -699 163 86 2 822 285 287 34 11 chr1 31152300 31152388 -166043044 + PB1D7 SINE Alu 23 112 -8 2 822 568 291 0 3 chr1 31152396 31152535 -166042897 + B1F SINE Alu 8 143 -5 2 822 318 67 0 0 chr1 31152545 31152590 -166042842 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 822 224 208 0 0 chr1 31152590 31152643 -166042789 + (CAGA)n Simple_repeat Simple_repeat 1 53 0 2 822 277 342 55 73 chr1 31153822 31153986 -166041446 + B4A SINE B4 2 162 -130 2 822 258 312 0 0 chr1 31154233 31154313 -166041119 + MIR SINE MIR 123 202 -60 2 822 267 283 92 28 chr1 31154399 31154541 -166040891 + L1MD LINE L1 2375 2525 -3621 2 822 425 278 69 81 chr1 31154818 31154944 -166040488 + L1M5 LINE L1 2763 2892 -3254 2 822 1264 61 0 0 chr1 31154944 31155091 -166040341 + B1_Mus1 SINE Alu 2 148 0 2 822 532 263 129 29 chr1 31155091 31155445 -166039987 + L1M5 LINE L1 2888 3237 -2909 2 822 503 281 152 45 chr1 31155565 31155763 -166039669 + B4A SINE B4 1 219 -73 2 822 218 156 22 0 chr1 31155820 31155865 -166039567 + C-rich Low_complexity Low_complexity 4 49 0 2 822 515 190 0 17 chr1 31156057 31156175 -166039257 + CT-rich Low_complexity Low_complexity 5 120 0 2 822 1153 205 5 18 chr1 31156593 31156812 -166038620 - B3 SINE B2 0 216 1 2 822 542 270 72 7 chr1 31156835 31156973 -166038459 + B1_Mur1 SINE Alu 3 149 0 2 822 185 31 0 86 chr1 31157587 31157622 -166037810 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 822 228 86 0 0 chr1 31157757 31157792 -166037640 + (A)n Simple_repeat Simple_repeat 1 35 0 2 822 1653 182 108 31 chr1 31157855 31158245 -166037187 + MTC LTR MaLR 2 421 0 2 822 37 23 0 0 chr1 31158897 31158941 -166036491 + AT_rich Low_complexity Low_complexity 1 44 0 3 822 212 292 144 67 chr1 31159634 31159814 -166035618 - MIRm SINE MIR 0 276 83 3 822 231 294 262 14 chr1 31159824 31160114 -166035318 - L2 LINE L2 -353 3066 2705 3 822 477 171 164 37 chr1 31160326 31160460 -166034972 + RLTR9A LTR ERVK 1 151 -217 3 822 453 81 0 0 chr1 31160531 31160593 -166034839 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 822 2861 18 9 0 chr1 31160600 31160935 -166034497 - ORR1A0 LTR MaLR -8 338 1 3 822 438 193 22 112 chr1 31160945 31161079 -166034353 + RLTR9A LTR ERVK 247 368 0 3 822 243 267 32 32 chr1 31161091 31161184 -166034248 - B4A SINE B4 -199 93 1 3 822 2244 148 13 53 chr1 31161989 31162383 -166033049 - ORR1C1 LTR MaLR 0 378 1 3 822 923 42 25 0 chr1 31162602 31162721 -166032711 + L1_Mus2 LINE L1 6444 6565 -1 3 822 202 200 0 0 chr1 31162731 31162753 -166032679 + A-rich Low_complexity Low_complexity 1 22 0 3 822 1848 24 0 5 chr1 31162753 31162986 -166032446 + L1Md_F2 LINE L1 6371 6582 0 3 822 298 235 0 0 chr1 31163113 31163181 -166032251 + B1F SINE Alu 77 144 -5 3 822 219 188 0 0 chr1 31163243 31163291 -166032141 + A-rich Low_complexity Low_complexity 1 48 0 3 822 309 179 0 0 chr1 31163681 31163737 -166031695 + MTC LTR MaLR 3 58 -363 3 822 1710 151 18 11 chr1 31163901 31164176 -166031256 + MTC LTR MaLR 137 413 -8 3 822 586 350 15 24 chr1 31164339 31164544 -166030888 - B4A SINE B4 -4 288 86 3 822 238 272 60 120 chr1 31164576 31164693 -166030739 + MT2B LTR ERVL 170 279 -322 3 822 645 46 11 22 chr1 31164631 31164720 -166030712 + B1_Mus2 SINE Alu 60 147 0 3 822 918 321 75 25 chr1 31164755 31165391 -166030041 - L1MA6 LINE L1 -14 6286 5619 3 822 254 266 31 0 chr1 31165574 31165638 -166029794 - ORR1E LTR MaLR -293 66 1 3 822 677 304 105 83 chr1 31165678 31166402 -166029030 - L1MA6 LINE L1 -755 5388 4649 3 822 1176 303 37 25 chr1 31166435 31166872 -166028560 + Lx8 LINE L1 6939 7380 -93 3 822 555 200 0 53 chr1 31166988 31167026 -166028406 - L1MA6 LINE L1 -1497 4643 4611 3 822 3371 50 30 16 chr1 31167026 31167456 -166027976 + RLTR10C LTR ERVK 1 436 0 3 822 492 200 0 53 chr1 31167456 31167549 -166027883 - L1MA6 LINE L1 -1530 4610 4519 3 822 206 118 0 0 chr1 31167586 31167620 -166027812 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 3 822 451 306 47 9 chr1 31167633 31167844 -166027588 - L1MA6 LINE L1 -2235 3908 3690 3 822 24 0 0 0 chr1 31168051 31168075 -166027357 + AT_rich Low_complexity Low_complexity 1 24 0 3 822 447 292 73 119 chr1 31168082 31168300 -166027132 - B3 SINE B2 -6 210 3 3 822 347 327 82 5 chr1 31168339 31168508 -166026924 + L2a LINE L2 2935 3117 -309 3 822 435 106 0 0 chr1 31168808 31168874 -166026558 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 3 822 22 35 0 0 chr1 31169285 31169314 -166026118 + AT_rich Low_complexity Low_complexity 1 29 0 3 822 523 286 60 26 chr1 31169365 31169516 -166025916 - ID_B1 SINE B4 -5 219 64 3 822 657 38 0 0 chr1 31169783 31169863 -166025569 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 822 850 184 22 22 chr1 31169904 31170082 -166025350 + Lx7 LINE L1 6754 6931 -765 3 822 461 320 130 11 chr1 31170211 31170495 -166024937 - L2a LINE L2 -40 3386 3069 3 822 22 56 0 0 chr1 31170768 31170804 -166024628 + AT_rich Low_complexity Low_complexity 1 36 0 3 822 269 26 26 0 chr1 31171054 31171092 -166024340 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 822 2376 234 78 17 chr1 31171604 31172266 -166023166 + Lx9 LINE L1 6592 7294 -350 3 822 276 356 74 18 chr1 31172433 31172596 -166022836 + LTR33 LTR ERVL 245 416 -99 3 822 321 325 26 17 chr1 31173092 31173208 -166022224 + MIR SINE MIR 26 142 -120 3 822 479 295 0 8 chr1 31173215 31173348 -166022084 + Lx8 LINE L1 6376 6507 -966 3 822 770 222 116 5 chr1 31173397 31173587 -166021845 - ORR1C2 LTR MaLR 0 384 174 3 822 359 145 14 0 chr1 31173587 31173656 -166021776 + GA-rich Low_complexity Low_complexity 1 70 0 3 822 557 344 17 26 chr1 31173946 31174179 -166021253 + MIRc SINE MIR 35 265 -3 3 822 322 270 169 0 chr1 31174382 31174471 -166020961 - PB1D7 SINE Alu -15 105 2 3 822 396 0 0 0 chr1 31174672 31174716 -166020716 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 822 491 273 0 0 chr1 31174721 31174831 -166020601 - PB1D10 SINE Alu -6 111 2 3 822 303 279 72 72 chr1 31174874 31175013 -166020419 + MLT1J LTR MaLR 234 372 -140 3 822 566 302 29 7 chr1 31175180 31175320 -166020112 + RSINE1 SINE B4 2 144 -21 3 822 244 277 0 30 chr1 31175320 31175387 -166020045 + (TATG)n Simple_repeat Simple_repeat 3 67 0 3 822 843 10 0 0 chr1 31175591 31175687 -166019745 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 822 406 329 166 42 chr1 31175708 31175949 -166019483 - B4 SINE B4 -20 272 2 3 822 416 318 139 0 chr1 31175952 31176081 -166019351 - ID_B1 SINE B4 0 224 78 3 822 226 346 27 36 chr1 31176078 31176189 -166019243 - RMER16 LTR ERVK -411 122 13 3 822 620 281 98 46 chr1 31176208 31176402 -166019030 - B3 SINE B2 -1 215 12 3 822 718 250 14 7 chr1 31177526 31177667 -166017765 + RSINE1 SINE B4 3 144 -21 3 822 234 0 0 0 chr1 31177681 31177707 -166017725 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 822 408 20 0 0 chr1 31177850 31177899 -166017533 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 822 299 267 11 53 chr1 31178298 31178393 -166017039 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 822 452 271 75 26 chr1 31178549 31178699 -166016733 - L1MDa LINE L1 -6364 269 112 3 822 183 80 0 0 chr1 31178699 31178724 -166016708 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 822 452 271 75 26 chr1 31178724 31178800 -166016632 - L1MDa LINE L1 -6522 111 33 3 822 227 308 45 15 chr1 31178861 31178927 -166016505 - PB1D7 SINE Alu -8 112 45 3 822 658 242 107 5 chr1 31179003 31179190 -166016242 + B3 SINE B2 1 206 -10 3 822 225 222 67 0 chr1 31179661 31179706 -166015726 - 5S rRNA rRNA -72 49 2 3 822 689 322 75 0 chr1 31179955 31180315 -166015117 - L1M2 LINE L1 -502 5798 5412 3 822 221 180 20 20 chr1 31180514 31180565 -166014867 + CT-rich Low_complexity Low_complexity 2 52 0 3 822 262 273 22 22 chr1 31180756 31180891 -166014541 + CT-rich Low_complexity Low_complexity 2 136 0 3 822 21 0 0 0 chr1 31181049 31181070 -166014362 + AT_rich Low_complexity Low_complexity 1 21 0 3 822 234 0 0 0 chr1 31181758 31181784 -166013648 + (T)n Simple_repeat Simple_repeat 1 26 0 3 822 608 301 0 0 chr1 31181875 31182011 -166013421 + B3A SINE B2 36 171 -27 3 822 2152 187 47 2 chr1 31182021 31182424 -166013008 - MTC LTR MaLR 0 421 1 3 822 22 0 0 0 chr1 31182782 31182804 -166012628 + AT_rich Low_complexity Low_complexity 1 22 0 3 822 294 248 17 26 chr1 31183154 31183270 -166012162 - L1MA10 LINE L1 -3 6331 6217 3 822 602 193 18 0 chr1 31183361 31183470 -166011962 - B1_Mus2 SINE Alu 0 147 37 3 822 279 333 0 0 chr1 31183864 31183875 -166011557 - ID_B1 SINE B4 -74 150 82 3 822 318 241 0 0 chr1 31183875 31183933 -166011499 - B1F2 SINE Alu -91 58 1 3 822 1425 205 79 114 chr1 31184088 31184545 -166010887 + RMER15 LTR ERVL 134 574 -1 3 822 3292 28 38 0 chr1 31184616 31185012 -166010420 + IAPLTR2a LTR ERVK 1 411 0 3 822 340 336 48 35 chr1 31185277 31185422 -166010010 - B1F1 SINE Alu 0 149 3 3 822 1413 201 97 21 chr1 31186185 31186344 -166009088 - ORR1D1 LTR MaLR -1 373 207 3 822 5828 34 0 0 chr1 31186344 31187027 -166008405 - L1Md_T LINE L1 0 6582 5900 3 822 1413 201 97 21 chr1 31187027 31187197 -166008235 - ORR1D1 LTR MaLR -168 206 20 3 822 189 132 0 0 chr1 31187666 31187704 -166007728 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 822 387 227 13 0 chr1 31188062 31188137 -166007295 + ORR1D2 LTR MaLR 8 83 -287 3 822 1923 219 73 2 chr1 31188139 31188564 -166006868 - MT2A LTR ERVL -2 531 77 3 822 667 279 206 16 chr1 31188567 31188878 -166006554 + Lx6 LINE L1 6867 7417 -43 3 822 295 219 104 9 chr1 31189118 31189224 -166006208 - L1M2 LINE L1 -582 5709 5594 3 822 973 245 21 0 chr1 31189552 31189785 -166005647 + ORR1D2 LTR MaLR 133 370 0 3 822 200 236 63 89 chr1 31189790 31189869 -166005563 + MER5B DNA MER1_type 58 134 -44 3 822 313 288 99 57 chr1 31190828 31191032 -166004400 - MIR SINE MIR -31 237 25 3 822 956 308 53 94 chr1 31191870 31192412 -166003020 - MT2A LTR ERVL -11 522 3 3 822 264 334 37 53 chr1 31192412 31192581 -166002851 - MLT1F2 LTR MaLR -131 496 298 3 822 250 328 32 32 chr1 31192973 31193096 -166002336 + LTR33 LTR ERVL 391 513 -2 3 822 265 244 47 78 chr1 31193137 31193266 -166002166 + Lx4B LINE L1 6929 7053 -5 3 822 491 204 11 0 chr1 31193306 31193399 -166002033 - PB1D10 SINE Alu -5 112 19 3 822 1850 166 24 97 chr1 31194360 31194774 -166000658 + ORR1B1 LTR MaLR 3 386 -8 3 822 548 219 118 73 chr1 31194778 31195024 -166000408 - L1_Rod LINE L1 -292 5555 5299 3 823 317 82 20 0 chr1 31195886 31195935 -165999497 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 823 374 100 0 16 chr1 31196235 31196296 -165999136 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 823 236 297 78 35 chr1 31196786 31196901 -165998531 - PB1D7 SINE Alu 0 120 1 3 823 2293 142 0 3 chr1 31197195 31197540 -165997892 - ORR1A1 LTR MaLR -2 344 1 3 823 329 245 133 29 chr1 31197616 31197721 -165997711 - PB1D10 SINE Alu -1 116 1 3 823 291 204 0 53 chr1 31197670 31197727 -165997705 - B4A SINE B4 -159 133 80 3 823 1100 108 32 3 chr1 31198084 31198269 -165997163 + RMER6A LTR ERVK 519 756 0 3 823 730 203 72 26 chr1 31198269 31198421 -165997011 + B3 SINE B2 57 215 -1 3 823 21 36 0 0 chr1 31198649 31198677 -165996755 + AT_rich Low_complexity Low_complexity 1 28 0 3 823 207 0 0 0 chr1 31199970 31199993 -165995439 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 823 582 242 23 0 chr1 31199998 31200126 -165995306 + B1_Mur4 SINE Alu 1 131 -19 4 823 672 13 0 0 chr1 31200140 31200217 -165995215 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 823 858 281 27 61 chr1 31200360 31200689 -165994743 - RMER15 LTR ERVL 0 575 258 4 823 396 214 12 12 chr1 31201001 31201086 -165994346 + MLT1D LTR MaLR 396 480 -25 4 823 598 264 49 28 chr1 31201316 31201460 -165993972 + B1F2 SINE Alu 1 147 -2 4 823 189 0 0 0 chr1 31201537 31201558 -165993874 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 823 2273 177 43 5 chr1 31202044 31202442 -165992990 + MTC LTR MaLR 1 413 -8 4 823 1835 271 106 47 chr1 31202618 31203224 -165992208 + L1_Mur3 LINE L1 1220 1854 -4026 4 823 180 77 0 0 chr1 31203224 31203250 -165992182 + (CCA)n Simple_repeat Simple_repeat 1 26 0 4 823 1835 271 106 47 chr1 31203250 31203715 -165991717 + L1_Mur3 LINE L1 1855 2355 -3525 4 823 299 225 107 53 chr1 31204578 31204653 -165990779 + RSINE1 SINE B4 87 165 0 4 823 732 271 56 63 chr1 31204670 31205078 -165990354 - RMER16 LTR ERVK -1 532 1 4 823 21 71 0 0 chr1 31205084 31205126 -165990306 + AT_rich Low_complexity Low_complexity 1 42 0 4 823 638 246 0 0 chr1 31207405 31207531 -165987901 + ID_B1 SINE B4 96 221 -3 4 823 787 259 62 113 chr1 31207580 31208012 -165987420 + RMER17C LTR ERVK 1 410 0 4 823 374 294 204 7 chr1 31208033 31208076 -165987356 + B3A SINE B2 1 53 -145 4 823 1233 106 4 58 chr1 31208076 31208316 -165987116 - Lx LINE L1 -4 6650 6424 4 823 374 294 204 7 chr1 31208316 31208419 -165987013 + B3A SINE B2 54 176 -22 4 823 378 42 0 0 chr1 31208438 31208486 -165986946 + (TATG)n Simple_repeat Simple_repeat 3 50 0 4 823 236 245 221 40 chr1 31208819 31208968 -165986464 + L2a LINE L2 3248 3423 -3 4 823 820 213 29 17 chr1 31209000 31209172 -165986260 - B2_Mm2 SINE B2 -17 178 5 4 823 317 208 46 19 chr1 31209469 31209577 -165985855 + (TATG)n Simple_repeat Simple_repeat 4 114 0 4 823 542 168 6 36 chr1 31209585 31209752 -165985680 + (TA)n Simple_repeat Simple_repeat 1 162 0 4 823 500 190 24 18 chr1 31209775 31209941 -165985491 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 823 423 0 0 0 chr1 31210478 31210525 -165984907 + (TTA)n Simple_repeat Simple_repeat 1 47 0 4 823 367 269 98 68 chr1 31211402 31211633 -165983799 - MLT1A0 LTR MaLR -1 389 150 4 823 220 293 13 51 chr1 31212044 31212123 -165983309 - MIR SINE MIR -113 149 74 4 823 348 338 29 36 chr1 31212236 31212374 -165983058 + MLT1E2 LTR MaLR 411 547 -80 4 823 268 277 142 27 chr1 31212492 31212663 -165982769 - MLT1E3 LTR MaLR -343 310 69 4 823 306 0 0 0 chr1 31212874 31212908 -165982524 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 823 403 352 78 55 chr1 31214369 31214640 -165980792 - B4 SINE B4 -12 280 4 4 823 879 245 60 0 chr1 31215187 31215403 -165980029 + Lx7 LINE L1 6373 6601 -1095 4 823 329 316 71 0 chr1 31215414 31215512 -165979920 - MER21B LTR ERV1 -613 250 146 4 823 377 302 42 25 chr1 31215931 31216050 -165979382 + MLT1J LTR MaLR 46 166 -346 4 823 359 349 0 27 chr1 31216355 31216467 -165978965 + RSINE1 SINE B4 53 161 -4 4 823 432 0 0 0 chr1 31216470 31216518 -165978914 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 823 501 348 136 27 chr1 31216563 31216938 -165978494 - MLT1E2 LTR MaLR -138 489 74 4 823 4646 149 60 58 chr1 31216956 31217845 -165977587 + RMER19B LTR ERVK 1 890 -12 4 823 1587 252 52 72 chr1 31217889 31218209 -165977223 - MTD LTR MaLR -8 411 77 4 823 1219 64 97 11 chr1 31218209 31218384 -165977048 - B2_Mm2 SINE B2 -3 192 3 4 823 1587 252 52 72 chr1 31218384 31218482 -165976950 - MTD LTR MaLR -343 76 1 4 823 625 319 49 27 chr1 31219099 31219283 -165976149 - B3 SINE B2 -27 189 2 4 823 932 273 14 5 chr1 31219294 31219511 -165975921 - ID_B1 SINE B4 -3 221 3 4 823 323 293 38 125 chr1 31219539 31219699 -165975733 + RSINE1 SINE B4 2 147 -18 4 823 21 0 0 0 chr1 31219702 31219723 -165975709 + GC_rich Low_complexity Low_complexity 1 21 0 4 823 351 240 159 20 chr1 31219784 31219941 -165975491 - B4A SINE B4 -95 197 14 4 823 1716 246 51 23 chr1 31219987 31220416 -165975016 + RLTR18B LTR ERVK 69 509 -3 4 823 2542 190 42 69 chr1 31220689 31221283 -165974149 - RLTR40 LTR ERVK -7 810 233 4 823 396 0 0 0 chr1 31222253 31222297 -165973135 + (A)n Simple_repeat Simple_repeat 1 44 0 4 823 1458 159 0 20 chr1 31222297 31222548 -165972884 - RLTR40 LTR ERVK -570 247 2 4 823 1133 65 0 0 chr1 31223067 31223205 -165972227 + B1_Mm SINE Alu 1 138 -9 4 823 312 70 0 0 chr1 31223205 31223248 -165972184 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 823 493 344 52 7 chr1 31223493 31223648 -165971784 + RSINE1 SINE B4 2 163 -2 4 823 6612 69 51 1 chr1 31223752 31224690 -165970742 + L1_Mus2 LINE L1 5588 6654 0 4 823 758 278 137 16 chr1 31224716 31225030 -165970402 + Tigger5 DNA MER2_type 2048 2399 -7 4 823 7402 66 1 6 chr1 31225184 31226277 -165969155 + L1_Mus2 LINE L1 5480 6566 0 4 823 6057 88 14 16 chr1 31226277 31226378 -165969054 + L1_Mus3 LINE L1 5780 5874 -764 4 823 3562 20 0 0 chr1 31226378 31226774 -165968658 - MTA_Mm LTR MaLR 0 396 1 4 823 8362 53 23 5 chr1 31226776 31227852 -165967580 - MTA_Mm-int LTR MaLR -2 1096 1 4 823 3588 15 0 0 chr1 31227852 31228248 -165967184 - MTA_Mm LTR MaLR 0 396 1 4 823 6057 88 14 16 chr1 31228248 31229034 -165966398 + L1_Mus3 LINE L1 5875 6638 0 4 823 898 164 16 16 chr1 31229505 31229691 -165965741 - Lx2A1 LINE L1 -3 7005 6820 4 823 432 0 0 0 chr1 31229698 31229746 -165965686 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 823 459 210 83 115 chr1 31229751 31229907 -165965525 - RSINE1 SINE B4 -13 152 2 4 823 202 286 9 19 chr1 31229928 31230035 -165965397 + A-rich Low_complexity Low_complexity 4 109 0 4 823 1482 129 22 0 chr1 31230362 31230586 -165964846 + RMER19B LTR ERVK 1 229 -673 4 823 1751 126 35 0 chr1 31230589 31230850 -165964582 + RMER19B LTR ERVK 633 902 0 4 823 427 236 11 11 chr1 31230855 31230945 -165964487 + RSINE1 SINE B4 3 92 -73 4 823 703 157 7 45 chr1 31230976 31231130 -165964302 + RMER17A-int LTR ERVK 844 991 -737 4 823 2419 170 8 126 chr1 31231166 31231800 -165963632 + RMER17A-int LTR ERVK 982 1540 -188 4 823 250 194 0 46 chr1 31231829 31231894 -165963538 + RMER13B LTR ERVK 838 899 -9 4 823 450 65 0 0 chr1 31233738 31233800 -165961632 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 823 815 175 34 20 chr1 31234631 31234777 -165960655 - B1_Mur4 SINE Alu -2 148 1 4 823 233 382 36 62 chr1 31234777 31234855 -165960577 - RLTR16 LTR ERVK -123 382 310 4 823 318 295 33 33 chr1 31234869 31234960 -165960472 - PB1D10 SINE Alu -26 91 1 4 823 351 0 0 0 chr1 31235542 31235581 -165959851 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 823 1039 205 0 11 chr1 31235797 31235984 -165959448 - B3 SINE B2 -27 189 5 4 823 517 45 44 11 chr1 31236216 31236306 -165959126 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 823 1983 183 8 24 chr1 31236948 31237328 -165958104 - ORR1D1 LTR MaLR 0 374 1 4 823 317 188 71 0 chr1 31237381 31237466 -165957966 + L1MA8 LINE L1 5703 5793 -498 4 823 377 114 68 8 chr1 31237466 31237599 -165957833 + (TA)n Simple_repeat Simple_repeat 2 142 0 4 823 1153 266 83 13 chr1 31237614 31238083 -165957349 + L1MA8 LINE L1 5783 6284 -7 4 823 23 33 0 0 chr1 31238223 31238253 -165957179 + AT_rich Low_complexity Low_complexity 1 30 0 4 823 1059 71 0 0 chr1 31238734 31238875 -165956557 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 4 823 369 0 0 0 chr1 31239196 31239237 -165956195 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 823 442 338 0 0 chr1 31239239 31239378 -165956054 - B1_Mur1 SINE Alu -9 140 2 4 823 210 37 0 0 chr1 31239908 31239935 -165955497 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 823 790 297 91 59 chr1 31240494 31240899 -165954533 - Lx6 LINE L1 -47 7413 6996 4 823 753 246 0 63 chr1 31240923 31241114 -165954318 - B3 SINE B2 0 216 38 4 823 513 149 21 7 chr1 31241457 31241599 -165953833 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 4 823 270 176 0 0 chr1 31242091 31242142 -165953290 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 4 823 186 229 0 0 chr1 31242291 31242326 -165953106 + MIR SINE MIR 86 120 -142 4 823 749 225 0 0 chr1 31242579 31242717 -165952715 - B1_Mm SINE Alu -9 138 1 4 823 740 202 0 0 chr1 31242772 31242901 -165952531 - B3 SINE B2 -86 130 2 4 823 729 180 11 22 chr1 31244030 31244212 -165951220 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 823 342 71 0 0 chr1 31244217 31244259 -165951173 + HAL1-3A_ME LINE L1 1976 2017 -841 4 823 3837 72 6 21 chr1 31244420 31244943 -165950489 - L1_Mus3 LINE L1 -2 6636 6122 4 823 2781 185 20 0 chr1 31245527 31246025 -165949407 - Lx2A1 LINE L1 -5 7003 6496 4 823 1101 124 60 37 chr1 31246782 31246999 -165948433 - Lx3C LINE L1 -3 6973 6752 4 823 348 295 19 19 chr1 31246999 31247106 -165948326 - MER97c DNA MER1_type? -982 108 2 4 823 373 339 75 37 chr1 31248106 31248293 -165947139 - MER77 LTR ERVL -357 250 57 4 823 230 258 132 22 chr1 31248532 31248623 -165946809 - MLT1E2 LTR MaLR -338 289 189 4 823 299 323 70 47 chr1 31248991 31249163 -165946269 - MER102b DNA MER1_type -118 223 48 4 823 84 29 0 0 chr1 31249851 31249956 -165945476 + AT_rich Low_complexity Low_complexity 1 105 0 4 823 411 328 78 0 chr1 31250021 31250149 -165945283 - RSINE1 SINE B4 -13 152 15 4 823 196 400 44 24 chr1 31250772 31250977 -165944455 - L2a LINE L2 -4 3422 3214 4 823 734 246 151 17 chr1 31251003 31251235 -165944197 + MLT1B LTR MaLR 24 286 -104 4 823 432 0 0 0 chr1 31252825 31252873 -165942559 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 823 618 91 0 0 chr1 31252875 31252974 -165942458 + (GA)n Simple_repeat Simple_repeat 1 99 0 4 823 291 54 0 0 chr1 31254691 31254728 -165940704 + (CATA)n Simple_repeat Simple_repeat 3 39 0 5 823 317 213 146 8 chr1 31254814 31254937 -165940495 - Lx6 LINE L1 -8 7452 7313 5 823 1204 49 0 0 chr1 31254945 31255088 -165940344 + B1_Mus2 SINE Alu 1 143 -4 5 823 468 0 0 0 chr1 31255091 31255143 -165940289 + (TAAAA)n Simple_repeat Simple_repeat 2 53 0 5 823 689 129 0 7 chr1 31255208 31255348 -165940084 + (TC)n Simple_repeat Simple_repeat 1 139 0 5 823 696 179 7 20 chr1 31255382 31255530 -165939902 - Lx7 LINE L1 -346 7350 7205 5 823 243 312 26 0 chr1 31255978 31256055 -165939377 - MIRb SINE MIR 0 268 190 5 823 21 36 0 0 chr1 31256716 31256744 -165938688 + AT_rich Low_complexity Low_complexity 1 28 0 5 823 427 281 78 17 chr1 31256837 31256953 -165938479 + ID_B1 SINE B4 87 209 -15 5 823 225 65 0 0 chr1 31256955 31256986 -165938446 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 5 823 25 0 0 0 chr1 31257278 31257303 -165938129 + AT_rich Low_complexity Low_complexity 1 25 0 5 823 426 302 15 44 chr1 31257310 31257445 -165937987 - MLT1E3 LTR MaLR -57 567 437 5 823 209 345 162 32 chr1 31257485 31257701 -165937731 - L2b LINE L2 -202 3173 2930 5 823 1756 88 38 0 chr1 31258031 31258270 -165937162 - L1_Mus2 LINE L1 0 6566 6319 5 823 185 0 40 0 chr1 31258280 31258305 -165937127 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 823 224 316 25 12 chr1 31258433 31258513 -165936919 - MIR SINE MIR -103 105 25 5 823 3359 38 2 0 chr1 31258801 31259196 -165936236 - MTA_Mm LTR MaLR 0 396 1 5 823 396 0 0 0 chr1 31259324 31259368 -165936064 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 823 513 284 92 17 chr1 31259374 31259614 -165935818 + L1MA4 LINE L1 5866 6123 -177 5 823 249 183 33 0 chr1 31259640 31259700 -165935732 + L1MA4 LINE L1 6210 6271 -29 5 823 30 45 0 0 chr1 31259768 31259812 -165935620 + AT_rich Low_complexity Low_complexity 1 44 0 5 823 268 365 19 57 chr1 31262685 31262842 -165932590 + MLT1J LTR MaLR 110 260 -252 5 823 408 111 0 0 chr1 31262918 31262990 -165932442 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 823 432 0 0 0 chr1 31263603 31263651 -165931781 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 823 260 302 57 23 chr1 31265076 31265164 -165930268 + MLT1J LTR MaLR 424 514 -48 5 823 2979 80 3 0 chr1 31265181 31265571 -165929861 - MTB LTR MaLR -8 392 2 5 823 189 188 38 0 chr1 31265615 31265695 -165929737 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 823 580 267 25 51 chr1 31266481 31266639 -165928793 + RSINE1 SINE B4 2 155 -10 5 823 204 40 0 0 chr1 31266649 31266674 -165928758 + (CTAA)n Simple_repeat Simple_repeat 2 26 0 5 823 690 141 0 21 chr1 31266715 31266860 -165928572 + (TA)n Simple_repeat Simple_repeat 2 143 0 5 823 7091 8 1 1 chr1 31267776 31268619 -165926813 - L1_Mm LINE L1 -127 5756 4914 5 823 1062 23 0 0 chr1 31268619 31268752 -165926680 + L1Md_A LINE L1 6450 6582 0 5 823 207 0 0 0 chr1 31269812 31269835 -165925597 + (T)n Simple_repeat Simple_repeat 1 23 0 5 823 185 359 0 0 chr1 31270441 31270505 -165924927 + L2 LINE L2 2409 2472 -947 5 823 399 89 0 0 chr1 31271441 31271497 -165923935 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 823 197 269 0 0 chr1 31271643 31271695 -165923737 + MER5A DNA MER1_type 31 82 -107 5 823 326 278 14 27 chr1 31272212 31272286 -165923146 + RSINE1 SINE B4 58 130 -35 5 823 762 43 0 0 chr1 31272293 31272387 -165923045 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 823 383 293 145 8 chr1 31273056 31273173 -165922259 - RSINE1 SINE B4 -2 163 31 5 823 6347 4 0 0 chr1 31274721 31275421 -165920011 + L1Md_A LINE L1 5883 6582 0 5 823 225 0 0 0 chr1 31276047 31276072 -165919360 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 823 278 350 110 0 chr1 31276958 31277058 -165918374 - PB1 SINE Alu -8 119 9 5 823 522 260 164 8 chr1 31277171 31277299 -165918133 + B3 SINE B2 2 149 -67 5 823 3126 217 143 59 chr1 31277304 31278118 -165917314 - MTD-int LTR MaLR -138 1120 223 5 823 297 0 0 0 chr1 31278118 31278151 -165917281 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 5 823 764 189 0 0 chr1 31278151 31278283 -165917149 - B1_Mus2 SINE Alu -14 133 2 5 823 3126 217 143 59 chr1 31278283 31278491 -165916941 - MTD-int LTR MaLR -1036 222 12 5 823 1651 227 35 38 chr1 31278504 31278875 -165916557 - MTD LTR MaLR -2 417 48 5 823 833 239 72 0 chr1 31278988 31279168 -165916264 - B3 SINE B2 -23 193 1 5 823 21 0 0 0 chr1 31281040 31281061 -165914371 + AT_rich Low_complexity Low_complexity 1 21 0 5 823 348 247 51 10 chr1 31281408 31281506 -165913926 - MER5B DNA MER1_type -2 176 75 5 823 343 315 124 52 chr1 31283240 31283814 -165911618 - L2a LINE L2 -1 3425 2805 5 823 2235 103 16 6 chr1 31284261 31284583 -165910849 - ORR1A2 LTR MaLR -2 325 1 5 823 383 287 69 18 chr1 31284925 31285202 -165910230 + L1MA6 LINE L1 6010 6300 0 5 823 612 187 0 0 chr1 31285481 31285604 -165909828 + (CA)n Simple_repeat Simple_repeat 2 124 0 5 823 381 305 60 16 chr1 31285729 31285979 -165909453 - L1MA5 LINE L1 -364 5936 5676 5 823 355 245 132 26 chr1 31286191 31286342 -165909090 + MLT1A1 LTR MaLR 69 235 -270 5 823 228 308 7 131 chr1 31286320 31286473 -165908959 - RMER21A LTR ERV1 -123 824 691 5 823 201 175 0 0 chr1 31286473 31286513 -165908919 + CT-rich Low_complexity Low_complexity 3 42 0 5 823 332 330 0 0 chr1 31286539 31286636 -165908796 - B1F SINE Alu -51 98 2 5 823 387 73 0 0 chr1 31286636 31286691 -165908741 + (TTCTG)n Simple_repeat Simple_repeat 1 55 0 5 823 23 0 0 0 chr1 31287488 31287511 -165907921 + AT_rich Low_complexity Low_complexity 1 23 0 5 823 606 311 83 0 chr1 31287781 31287974 -165907458 + MLT1A1 LTR MaLR 190 398 -10 5 823 3904 102 202 12 chr1 31288082 31288712 -165906720 + Lx3_Mus LINE L1 6111 6871 -138 5 823 180 0 0 0 chr1 31288712 31288732 -165906700 + (TGG)n Simple_repeat Simple_repeat 2 21 0 5 823 3904 102 202 12 chr1 31288732 31288837 -165906595 + Lx3_Mus LINE L1 6872 6986 -23 5 823 351 0 0 0 chr1 31288839 31288878 -165906554 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 823 22 56 0 0 chr1 31288957 31288993 -165906439 + AT_rich Low_complexity Low_complexity 1 36 0 5 823 875 234 138 35 chr1 31289091 31289445 -165905987 - L1_Rod LINE L1 -6302 870 505 5 823 243 0 0 0 chr1 31289445 31289472 -165905960 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 823 875 234 138 35 chr1 31289472 31289516 -165905916 - L1_Rod LINE L1 -6668 504 431 5 823 243 254 0 0 chr1 31289733 31289788 -165905644 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 823 255 61 0 0 chr1 31290922 31290955 -165904477 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 5 823 681 325 61 13 chr1 31292068 31292380 -165903052 + Lx8 LINE L1 6930 7256 -217 5 823 332 127 18 0 chr1 31292389 31292444 -165902988 + RMER15 LTR ERVL 404 459 -116 5 823 21 0 0 0 chr1 31292577 31292598 -165902834 + AT_rich Low_complexity Low_complexity 1 21 0 5 823 501 344 32 0 chr1 31292979 31293168 -165902264 - Lx8 LINE L1 -162 7311 7117 5 823 1527 192 105 6 chr1 31293217 31293542 -165901890 + ORR1B2 LTR MaLR 3 359 -8 5 823 706 308 46 0 chr1 31293554 31293814 -165901618 - Lx8 LINE L1 -459 7014 6743 5 823 260 194 0 43 chr1 31293846 31293916 -165901516 - L1_Mur3 LINE L1 -512 5368 5302 5 823 1776 125 24 30 chr1 31294066 31294362 -165901070 - Lx3A LINE L1 0 6981 6688 5 823 5358 91 20 4 chr1 31294362 31295155 -165900277 + Lx3A LINE L1 5880 6685 -296 5 823 1012 191 36 29 chr1 31295157 31295438 -165899994 - L1_Mur3 LINE L1 -549 5331 5049 5 823 1923 184 131 18 chr1 31295440 31296464 -165898968 - L1_Mur3 LINE L1 -4187 1693 549 5 823 3340 227 77 15 chr1 31296467 31296647 -165898785 + ORR1D1-int LTR MaLR 447 656 -714 5 823 186 43 0 0 chr1 31296647 31296670 -165898762 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 823 3340 227 77 15 chr1 31296670 31297280 -165898152 + ORR1D1-int LTR MaLR 657 1286 -84 5 823 1446 266 25 20 chr1 31297272 31297628 -165897804 + ORR1D1 LTR MaLR 12 369 -5 5 823 2969 75 32 3 chr1 31297822 31298319 -165897113 - L1_Mus3 LINE L1 -702 5936 5426 5 823 4612 85 100 0 chr1 31298319 31298988 -165896444 + L1_Mus3 LINE L1 5903 6638 0 5 823 728 299 43 0 chr1 31299193 31299380 -165896052 + ORR1E LTR MaLR 1 195 -164 5 823 3532 41 9 2 chr1 31299393 31299829 -165895603 - L1Md_F3 LINE L1 -14 6570 6132 5 823 267 365 12 0 chr1 31299829 31299914 -165895518 + ORR1E LTR MaLR 159 244 -115 5 823 446 235 10 0 chr1 31299976 31300074 -165895358 + ORR1E LTR MaLR 272 370 0 5 823 422 191 11 33 chr1 31300080 31300172 -165895260 + MTE2b LTR MaLR 286 375 -4 5 823 604 313 5 0 chr1 31300174 31300375 -165895057 + Lx8 LINE L1 6713 6914 -559 5 823 1494 277 104 21 chr1 31300381 31301188 -165894244 + L1_Rod LINE L1 2148 3021 -2826 5 823 2788 184 72 60 chr1 31301222 31301390 -165894042 + RMER6C LTR ERVK 1 190 -500 5 823 279 0 0 0 chr1 31301390 31301421 -165894011 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 823 2788 184 72 60 chr1 31301421 31301934 -165893498 + RMER6C LTR ERVK 191 690 0 5 823 792 269 76 76 chr1 31301959 31302566 -165892866 + L1_Mur3 LINE L1 3089 3695 -2185 5 823 3353 90 46 8 chr1 31302566 31303069 -165892363 + L1_Mus3 LINE L1 6116 6637 -1 5 823 4060 53 0 0 chr1 31303078 31303601 -165891831 + L1Md_F2 LINE L1 5064 5586 -297 5 823 8184 41 1 4 chr1 31303601 31304600 -165890832 + L1Md_F2 LINE L1 5587 6582 0 5 823 753 274 72 130 chr1 31304615 31304853 -165890579 + L1_Rod LINE L1 3686 3931 -1916 5 823 1228 54 0 0 chr1 31304853 31305000 -165890432 + B1_Mus2 SINE Alu 1 147 0 5 823 753 274 72 130 chr1 31305000 31305276 -165890156 + L1_Rod LINE L1 3932 4170 -1677 5 823 509 306 5 5 chr1 31305315 31305515 -165889917 + Lx8 LINE L1 4375 4574 -1306 5 823 2056 142 6 0 chr1 31305523 31305840 -165889592 - ORR1A4 LTR MaLR 0 329 11 5 823 849 317 27 16 chr1 31305846 31306285 -165889147 + L1M2 LINE L1 4610 5053 -1090 5 823 952 52 7 0 chr1 31306317 31306452 -165888980 - L1Md_F3 LINE L1 -3 6581 6446 5 823 3921 48 12 0 chr1 31306452 31306968 -165888464 + L1_Mm LINE L1 4892 5413 -470 5 823 26625 113 22 31 chr1 31307040 31309837 -165885595 + ETnERV3-int LTR ERVK 1247 3977 -1831 5 823 288 0 0 0 chr1 31309837 31309869 -165885563 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 823 26625 113 22 31 chr1 31309869 31311649 -165883783 + ETnERV3-int LTR ERVK 3978 5779 -29 5 823 5994 70 20 31 chr1 31311663 31312494 -165882938 + RLTR13B2 LTR ERVK 1 822 0 5 823 192 77 0 0 chr1 31312646 31312672 -165882760 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 823 1094 295 70 22 chr1 31312673 31313408 -165882024 + Lx8 LINE L1 5308 6069 -1627 5 823 2448 205 80 19 chr1 31313819 31313914 -165881518 - RLTR20B2 LTR ERVK 0 560 466 5 823 609 27 0 0 chr1 31313914 31313989 -165881443 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 823 2448 205 80 19 chr1 31313989 31314421 -165881011 - RLTR20B2 LTR ERVK -95 465 1 5 823 2225 233 64 83 chr1 31314608 31316232 -165879200 - RMER1B Other Other -6 1060 42 5 823 1932 286 70 26 chr1 31316629 31317409 -165878023 + Lx8 LINE L1 6242 7056 -417 5 823 2236 216 99 6 chr1 31317412 31317840 -165877592 - RLTR42-int LTR ERVK -127 5395 4926 5 823 4024 29 8 29 chr1 31317840 31318060 -165877372 + LTRIS_Mm LTR ERV1 1 220 -262 5 823 1616 11 21 16 chr1 31318060 31318252 -165877180 - B2_Mm1a SINE B2 0 193 1 5 823 4024 29 8 29 chr1 31318252 31318523 -165876909 + LTRIS_Mm LTR ERV1 221 482 0 5 823 2236 216 99 6 chr1 31318523 31318593 -165876839 - RLTR42-int LTR ERVK -597 4925 4856 5 823 1355 95 11 0 chr1 31318593 31318783 -165876649 + B2_Mm1t SINE B2 1 192 -1 6 823 2236 216 99 6 chr1 31318783 31318957 -165876475 - RLTR42-int LTR ERVK -667 4855 4660 5 823 1980 175 48 56 chr1 31319012 31319515 -165875917 - RLTR42-int LTR ERVK -962 4560 4062 5 823 1645 145 37 50 chr1 31319512 31319890 -165875542 - RLTR42-int LTR ERVK -1789 3733 3361 5 823 522 83 0 0 chr1 31319895 31319967 -165875465 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 6 823 260 320 56 16 chr1 31320266 31320517 -165874915 - L1MC4 LINE L1 -527 7515 7255 6 823 280 246 15 28 chr1 31320528 31320608 -165874824 + B1_Mur3 SINE Alu 69 142 -5 6 823 468 297 8 17 chr1 31320626 31320746 -165874686 + PB1D9 SINE Alu 2 120 0 6 823 576 157 28 7 chr1 31320746 31320887 -165874545 + GA-rich Low_complexity Low_complexity 2 145 0 6 823 234 128 0 0 chr1 31320894 31320933 -165874499 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 823 315 313 59 37 chr1 31321028 31321164 -165874268 + B1F2 SINE Alu 2 140 -9 6 823 772 211 44 156 chr1 31321445 31321875 -165873557 + MT2B LTR ERVL 13 563 -38 6 823 296 277 84 35 chr1 31321954 31322096 -165873336 + B1_Mur2 SINE Alu 1 149 0 6 823 371 200 23 12 chr1 31322558 31322644 -165872788 + B1_Mus1 SINE Alu 25 111 -37 6 823 216 0 0 0 chr1 31322647 31322671 -165872761 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 823 342 115 0 0 chr1 31322774 31322826 -165872606 + (T)n Simple_repeat Simple_repeat 1 52 0 6 823 1091 88 0 0 chr1 31322826 31322973 -165872459 - B1_Mm SINE Alu 0 147 1 6 823 317 333 9 35 chr1 31323504 31323619 -165871813 - B1_Mur3 SINE Alu -19 130 19 6 823 217 171 0 24 chr1 31324805 31324847 -165870585 + CT-rich Low_complexity Low_complexity 2 42 0 6 102 6082 169 33 9 chr1 31324989 31327336 -165868096 + L1_Mus4 LINE L1 4099 6636 0 6 824 404 301 10 0 chr1 31327656 31327759 -165867673 - B1F1 SINE Alu -1 148 45 6 824 460 344 78 16 chr1 31327919 31328241 -165867191 - L1MC4 LINE L1 -446 7596 7255 6 824 239 222 18 18 chr1 31328252 31328307 -165867125 + B1_Mur3 SINE Alu 71 125 -24 6 824 406 302 0 0 chr1 31328332 31328451 -165866981 + PB1D9 SINE Alu 2 120 0 6 824 433 254 0 17 chr1 31328452 31328632 -165866800 + GA-rich Low_complexity Low_complexity 2 178 0 6 824 237 297 85 15 chr1 31328728 31328858 -165866574 + B1F2 SINE Alu 2 140 -9 6 824 822 211 234 143 chr1 31328990 31329430 -165866002 + MT2B LTR ERVL 3 563 -38 6 824 292 277 84 42 chr1 31329508 31329651 -165865781 + B1_Mur2 SINE Alu 1 149 0 6 824 235 304 0 0 chr1 31329843 31329899 -165865533 + ID4 SINE ID 17 72 -11 6 824 410 176 23 12 chr1 31330106 31330192 -165865240 + B1_Mus1 SINE Alu 25 111 -37 6 824 324 0 0 0 chr1 31330195 31330231 -165865201 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 824 264 170 0 0 chr1 31330334 31330387 -165865045 + T-rich Low_complexity Low_complexity 1 53 0 6 824 1074 89 7 0 chr1 31330390 31330536 -165864896 - B1_Mm SINE Alu 0 147 1 6 824 209 108 27 0 chr1 31332370 31332407 -165863025 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 824 2528 170 2 0 chr1 31332567 31333074 -165862358 + L1_Mur2 LINE L1 4099 4606 -1271 6 824 474 18 0 0 chr1 31333089 31333144 -165862288 + (TAA)n Simple_repeat Simple_repeat 2 56 0 6 824 6374 105 4 20 chr1 31333145 31334214 -165861218 + L1Md_F LINE L1 210 1217 -5320 6 824 4769 65 0 41 chr1 31334213 31335083 -165860349 + L1Md_F2 LINE L1 628 1453 -4430 6 824 24264 69 1 0 chr1 31335082 31338421 -165857011 + L1Md_F2 LINE L1 2244 5586 -297 6 824 7918 54 1 1 chr1 31338421 31339405 -165856027 + L1Md_F2 LINE L1 5587 6570 -12 6 824 955 161 17 0 chr1 31339423 31339597 -165855835 + B2_Mm1t SINE B2 3 179 -14 6 824 4932 137 40 2 chr1 31339603 31340418 -165855014 + L1_Mus4 LINE L1 5784 6629 -7 6 824 373 236 78 8 chr1 31340870 31340998 -165854434 + B1_Mur1 SINE Alu 2 138 -11 6 824 1018 233 207 128 chr1 31341131 31341623 -165853809 + MT2B LTR ERVL 3 601 0 6 824 249 281 98 56 chr1 31341686 31341829 -165853603 + B1_Mur1 SINE Alu 1 149 0 6 824 292 250 0 0 chr1 31342046 31342102 -165853330 + ID4 SINE ID 17 72 -11 6 824 191 194 0 31 chr1 31342202 31342266 -165853166 + T-rich Low_complexity Low_complexity 5 66 0 6 824 320 228 25 12 chr1 31342327 31342407 -165853025 + B1_Mus1 SINE Alu 28 108 -40 6 824 969 34 0 0 chr1 31342413 31342530 -165852902 + (CAAAA)n Simple_repeat Simple_repeat 1 117 0 6 824 345 323 0 0 chr1 31343140 31343239 -165852193 - B1_Mur1 SINE Alu -32 117 19 6 824 426 101 0 0 chr1 31344420 31344489 -165850943 + (CAG)n Simple_repeat Simple_repeat 2 70 0 6 824 678 25 0 0 chr1 31344704 31344784 -165850648 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 6 824 10922 145 26 43 chr1 31344994 31347545 -165847887 + L1_Mur1 LINE L1 1554 3810 -2076 6 824 1792 164 72 31 chr1 31347545 31347936 -165847496 - RLTR9E LTR ERVK 0 409 3 6 824 10395 204 15 182 chr1 31347936 31349411 -165846021 + L1_Mur1 LINE L1 3811 4751 -1135 6 824 3412 35 0 2 chr1 31349411 31349808 -165845624 + MTA_Mm LTR MaLR 1 396 0 6 824 10395 204 15 182 chr1 31349808 31350796 -165844636 + L1_Mur1 LINE L1 4752 5733 -153 6 824 5622 99 7 1 chr1 31350956 31351955 -165843477 - L1Md_F2 LINE L1 -129 6453 5447 6 824 37582 34 2 6 chr1 31351961 31358183 -165837249 - L1Md_T LINE L1 0 6582 394 6 824 28050 91 27 9 chr1 31358183 31363051 -165832381 - L1Md_A LINE L1 -421 5462 511 6 824 5675 105 2 5 chr1 31363993 31364804 -165830628 + L1_Mus4 LINE L1 5828 6636 0 6 824 677 217 200 0 chr1 31365055 31365235 -165830197 + B3 SINE B2 1 216 0 6 824 1620 150 18 0 chr1 31365282 31365556 -165829876 + Lx LINE L1 6361 6639 -15 6 824 2171 125 66 6 chr1 31365698 31366045 -165829387 + RLTR9A LTR ERVK 1 368 0 6 824 25183 108 67 17 chr1 31366837 31368439 -165826993 + L1Md_F2 LINE L1 358 1972 -3911 6 824 183 42 0 0 chr1 31368439 31368463 -165826969 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 824 25183 81 105 6 chr1 31368463 31371687 -165823745 + L1Md_F2 LINE L1 1973 5586 -297 6 824 7941 55 6 0 chr1 31371687 31372674 -165822758 + L1Md_F2 LINE L1 5587 6579 -3 6 824 274 267 171 10 chr1 31372982 31373175 -165822257 - Charlie18a DNA MER1_type -3 339 116 6 824 1146 308 41 16 chr1 31373601 31373925 -165821507 - MTEa LTR MaLR -7 372 39 6 824 1214 262 35 29 chr1 31373925 31374302 -165821130 + MTE2a LTR MaLR 1 379 0 6 824 1146 308 41 16 chr1 31374302 31374340 -165821092 - MTEa LTR MaLR -341 38 1 6 824 799 295 112 65 chr1 31374496 31375138 -165820294 - RMER13A LTR ERVK -157 801 30 6 824 407 130 13 0 chr1 31376535 31376612 -165818820 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 824 391 347 33 66 chr1 31376639 31376821 -165818611 - B3A SINE B2 -16 182 7 6 824 237 287 151 32 chr1 31376857 31376983 -165818449 + MIRb SINE MIR 127 267 -1 6 824 1029 270 147 10 chr1 31377005 31377319 -165818113 - MTE2b LTR MaLR -1 378 22 6 824 433 374 12 35 chr1 31378002 31378171 -165817261 - RSINE1 SINE B4 0 165 1 6 824 294 29 0 0 chr1 31378363 31378398 -165817034 + (CAT)n Simple_repeat Simple_repeat 1 35 0 6 824 300 137 0 0 chr1 31378396 31378447 -165816985 + (CAA)n Simple_repeat Simple_repeat 1 51 0 6 824 21 57 0 0 chr1 31378529 31378564 -165816868 + AT_rich Low_complexity Low_complexity 1 35 0 6 824 294 95 0 0 chr1 31379142 31379184 -165816248 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 824 499 284 7 21 chr1 31379186 31379330 -165816102 - B1_Mur1 SINE Alu -7 142 1 6 824 2345 132 46 5 chr1 31379880 31380268 -165815164 - RLTR28B LTR ERVL -77 404 1 6 824 1337 286 48 65 chr1 31380356 31381431 -165814001 - L1_Rod LINE L1 -16 5831 4843 6 824 285 253 23 46 chr1 31381484 31381571 -165813861 + ID_B1 SINE B4 140 224 0 6 824 198 143 0 0 chr1 31382924 31382959 -165812473 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 824 556 102 20 0 chr1 31382976 31383074 -165812358 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 6 824 4854 79 12 52 chr1 31383231 31383961 -165811471 - L1_Mus3 LINE L1 -12 6626 5926 6 824 568 339 107 38 chr1 31383961 31384280 -165811152 + MLT1A0 LTR MaLR 21 361 -4 6 824 180 0 0 0 chr1 31384587 31384607 -165810825 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 6 824 1025 170 114 70 chr1 31384607 31384923 -165810509 - Lx7 LINE L1 -9 7687 7358 6 824 184 131 21 21 chr1 31384940 31384987 -165810445 + A-rich Low_complexity Low_complexity 2 48 0 6 824 359 253 0 0 chr1 31385006 31385093 -165810339 - Lx7 LINE L1 -338 7358 7272 6 824 738 234 0 33 chr1 31385223 31385373 -165810059 - B1_Mus2 SINE Alu -1 146 2 6 824 522 292 56 18 chr1 31385475 31385761 -165809671 - RMER15-int LTR ERVL -4067 932 636 6 824 187 239 0 95 chr1 31385928 31386002 -165809430 + L2 LINE L2 2719 2785 -634 6 824 306 362 22 7 chr1 31386009 31386148 -165809284 - RMER15-int LTR ERVL -4608 391 251 6 824 342 294 185 20 chr1 31386439 31386585 -165808847 - RMER15 LTR ERVL -100 475 306 6 824 294 276 194 8 chr1 31387924 31388048 -165807384 - MLT1J LTR MaLR -322 190 44 6 824 22 0 0 0 chr1 31389783 31389805 -165805627 + AT_rich Low_complexity Low_complexity 1 22 0 6 824 25 51 0 0 chr1 31390402 31390441 -165804991 + AT_rich Low_complexity Low_complexity 1 39 0 6 824 227 191 0 16 chr1 31391038 31391102 -165804330 + GA-rich Low_complexity Low_complexity 2 64 0 6 824 212 354 26 34 chr1 31391698 31391815 -165803617 - L2 LINE L2 -601 2818 2703 6 824 711 85 0 0 chr1 31391815 31391909 -165803523 - MTB LTR MaLR 0 407 314 6 824 1382 119 5 10 chr1 31391881 31392085 -165803347 - MTB LTR MaLR -197 203 1 6 824 421 324 84 86 chr1 31392112 31392662 -165802770 - L2 LINE L2 -758 2661 2113 6 824 24 0 0 0 chr1 31394169 31394193 -165801239 + AT_rich Low_complexity Low_complexity 1 24 0 6 824 2772 231 58 48 chr1 31394195 31394924 -165800508 - Lx6 LINE L1 -179 7281 6546 6 824 2039 228 109 25 chr1 31394935 31395492 -165799940 - Lx6 LINE L1 -1247 6213 5610 6 824 1666 169 249 2 chr1 31395492 31395902 -165799530 + MT2B LTR ERVL 1 511 -90 6 824 1100 75 75 0 chr1 31395902 31396060 -165799372 + MTB_Mm LTR MaLR 1 170 -237 6 824 2770 91 5 3 chr1 31396060 31396447 -165798985 + MTA_Mm LTR MaLR 3 390 -6 6 824 1074 64 43 0 chr1 31396447 31396588 -165798844 + B1_Mm SINE Alu 1 147 0 6 824 4188 82 5 5 chr1 31396627 31397218 -165798214 + MTA_Mm-int LTR MaLR 1 591 -507 6 824 248 211 0 0 chr1 31397255 31397307 -165798125 + MT2B LTR ERVL 548 599 -2 6 824 3338 162 72 132 chr1 31397327 31398151 -165797281 + ORR1B1-int LTR MaLR 1190 1963 0 6 824 571 181 8 25 chr1 31398151 31398270 -165797162 + ORR1B1 LTR MaLR 1 117 -277 6 824 230 344 53 68 chr1 31398297 31398503 -165796929 - RLTR41 LTR ERV1 -45 401 199 6 824 371 257 0 13 chr1 31398563 31398669 -165796763 - B1_Mur3 SINE Alu -51 99 6 7 824 196 167 32 32 chr1 31399116 31399178 -165796254 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 7 824 299 282 208 19 chr1 31399985 31400031 -165795401 - MT2A LTR ERVL 0 533 487 7 824 243 0 0 0 chr1 31400031 31400058 -165795374 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 824 299 282 208 19 chr1 31400058 31400170 -165795262 - MT2A LTR ERVL -47 486 346 7 824 582 368 21 50 chr1 31400173 31400453 -165794979 - MT2A LTR ERVL -105 428 157 7 824 1151 173 49 40 chr1 31400459 31400706 -165794726 - Lx LINE L1 0 6654 6406 7 824 235 309 119 49 chr1 31400709 31400852 -165794580 - MT2A LTR ERVL -380 153 1 7 824 344 249 83 125 chr1 31401429 31401501 -165793931 - Charlie2b DNA MER1_type -296 2486 2427 7 824 531 240 156 22 chr1 31401501 31401680 -165793752 + B3 SINE B2 2 204 -12 7 824 344 249 83 125 chr1 31401680 31401896 -165793536 - Charlie2b DNA MER1_type -356 2426 2210 7 824 3420 23 0 133 chr1 31402668 31403171 -165792261 + RLTR10C LTR ERVK 1 436 0 7 824 307 239 53 9 chr1 31403851 31403965 -165791467 + CT-rich Low_complexity Low_complexity 3 121 0 7 824 263 283 17 0 chr1 31404027 31404087 -165791345 - B1F2 SINE Alu -88 61 1 7 824 231 61 0 0 chr1 31404118 31404151 -165791281 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 7 824 3494 36 2 0 chr1 31405226 31405644 -165789788 + L1Md_F2 LINE L1 6164 6582 0 7 824 1728 201 49 44 chr1 31406122 31406527 -165788905 + MTB_Mm LTR MaLR 1 407 0 7 824 2281 187 27 34 chr1 31406527 31406662 -165788770 + MTB_Mm-int LTR MaLR 3 142 -1116 7 824 1642 35 0 0 chr1 31406662 31406861 -165788571 + L1Md_T LINE L1 6384 6582 0 7 824 2281 187 27 34 chr1 31406861 31407200 -165788232 + MTB_Mm-int LTR MaLR 143 474 -784 7 824 861 374 34 14 chr1 31407365 31407951 -165787481 - Lx8 LINE L1 -122 7351 6754 7 824 548 347 47 36 chr1 31407996 31408791 -165786641 - L1_Rod LINE L1 -3827 2020 1218 7 824 229 333 96 48 chr1 31408924 31408940 -165786492 - PB1 SINE Alu -8 119 11 7 824 305 310 0 45 chr1 31408940 31409028 -165786404 - ID_B1 SINE B4 -49 175 92 7 824 612 0 0 0 chr1 31409344 31409412 -165786020 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 7 824 22 0 0 0 chr1 31409916 31409938 -165785494 + AT_rich Low_complexity Low_complexity 1 22 0 7 824 341 292 132 37 chr1 31410109 31410355 -165785077 + MLT2B4 LTR ERVL 75 359 -195 7 824 772 332 133 29 chr1 31410485 31410966 -165784466 + MLT-int LTR MaLR 5 535 -1200 7 824 771 359 51 20 chr1 31411485 31411875 -165783557 + MLT-int LTR MaLR 1334 1735 0 7 824 611 304 109 47 chr1 31411995 31412333 -165783099 + MTE2a LTR MaLR 1 359 -20 7 824 350 410 31 27 chr1 31413908 31414169 -165781263 - LTR16E1 LTR ERVL -11 527 266 7 824 741 270 48 29 chr1 31414419 31414764 -165780668 - MLT1A0 LTR MaLR -47 361 5 7 824 1668 255 126 50 chr1 31415627 31415794 -165779638 + Lx6 LINE L1 6879 7039 -421 7 824 1805 191 58 13 chr1 31415794 31416171 -165779261 + ORR1B1 LTR MaLR 1 394 0 7 824 1668 255 126 50 chr1 31416171 31416392 -165779040 + Lx6 LINE L1 7040 7301 -159 7 824 288 0 0 0 chr1 31416392 31416424 -165779008 + (TTATA)n Simple_repeat Simple_repeat 4 35 0 7 824 1668 255 126 50 chr1 31416424 31416536 -165778896 + Lx6 LINE L1 7302 7412 -48 7 824 528 59 0 0 chr1 31416536 31416604 -165778828 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 824 1668 255 126 50 chr1 31416604 31416641 -165778791 + Lx6 LINE L1 7413 7458 -2 7 824 453 242 72 34 chr1 31416993 31417057 -165778375 + CYRA11_Mm Unknown Y-chromosome 106 256 -361 7 824 781 102 0 8 chr1 31417057 31417176 -165778256 - URR1B DNA MER1_type 0 225 108 7 824 453 242 72 34 chr1 31417176 31417202 -165778230 + CYRA11_Mm Unknown Y-chromosome 257 322 -295 7 824 611 21 10 31 chr1 31417541 31417637 -165777795 + (TTTTG)n Simple_repeat Simple_repeat 2 95 0 7 824 601 228 0 45 chr1 31417642 31417775 -165777657 - ID_B1 SINE B4 -17 207 81 7 824 641 66 0 11 chr1 31418137 31418229 -165777203 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 7 824 629 280 79 10 chr1 31418282 31418484 -165776948 - B3 SINE B2 0 216 1 7 824 409 271 72 36 chr1 31420025 31420163 -165775269 + ID_B1 SINE B4 82 224 0 7 824 216 0 0 0 chr1 31420736 31420760 -165774672 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 824 537 44 0 0 chr1 31420760 31420827 -165774605 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 824 4819 45 0 0 chr1 31421346 31421927 -165773505 - L1Md_F2 LINE L1 -2 6580 6000 7 824 720 244 103 5 chr1 31422902 31423096 -165772336 - B3 SINE B2 -3 213 1 7 824 210 37 0 0 chr1 31423265 31423292 -165772140 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 824 292 267 13 0 chr1 31423359 31423434 -165771998 - ID4_ SINE ID -6 77 2 7 824 369 312 98 34 chr1 31423995 31424227 -165771205 + MER77 LTR ERVL 274 572 -35 7 824 309 349 16 16 chr1 31424378 31424506 -165770926 - MIRb SINE MIR -115 153 26 7 824 383 0 21 0 chr1 31426101 31426148 -165769284 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 7 824 304 340 13 7 chr1 31426206 31426357 -165769075 - L1M5 LINE L1 -622 5618 5467 7 824 400 309 179 47 chr1 31426846 31427311 -165768121 - LTR80A LTR ERVL -23 561 38 7 824 366 250 12 12 chr1 31427325 31427406 -165768026 + ID2 SINE ID 3 83 0 7 824 2674 177 59 9 chr1 31427522 31428048 -165767384 - RMER1A Other Other -5 1025 474 7 824 1537 285 20 11 chr1 31428056 31428496 -165766936 - RMER1B Other Other -616 450 7 7 824 450 281 59 53 chr1 31429099 31429268 -165766164 - MTE2b LTR MaLR -167 212 43 7 824 335 221 78 0 chr1 31429268 31429345 -165766087 - MTE2b LTR MaLR -296 83 1 7 824 246 32 0 0 chr1 31429381 31429412 -165766020 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 824 446 371 19 81 chr1 31429523 31429695 -165765737 - B4A SINE B4 -45 247 88 7 824 705 134 0 8 chr1 31429695 31429815 -165765617 + Lx2B LINE L1 6873 6991 -9 7 824 446 371 19 81 chr1 31429815 31429903 -165765529 - B4A SINE B4 -205 87 3 7 824 252 0 0 0 chr1 31429957 31429985 -165765447 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 824 21 82 0 0 chr1 31430067 31430116 -165765316 + AT_rich Low_complexity Low_complexity 1 49 0 7 824 489 333 38 55 chr1 31430324 31430613 -165764819 - MT2A LTR ERVL -72 461 178 7 824 642 196 105 0 chr1 31430726 31430859 -165764573 + B1_Mur3 SINE Alu 3 149 0 7 824 621 144 0 0 chr1 31430859 31430963 -165764469 + (GAA)n Simple_repeat Simple_repeat 2 105 0 7 824 412 279 2 0 chr1 31431024 31431120 -165764312 - MTE2b LTR MaLR -281 98 1 7 824 254 260 24 83 chr1 31431204 31431288 -165764144 + MLT1D LTR MaLR 22 100 -405 7 824 255 31 0 0 chr1 31431419 31431451 -165763981 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 824 3474 20 2 0 chr1 31431755 31432150 -165763282 + MTA_Mm LTR MaLR 1 396 0 7 824 213 263 18 0 chr1 31432932 31432989 -165762443 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 7 824 688 328 37 29 chr1 31433276 31433521 -165761911 + B4A SINE B4 46 292 0 7 824 379 296 63 58 chr1 31433881 31434040 -165761392 + B3A SINE B2 57 216 0 7 824 255 327 43 60 chr1 31434052 31434169 -165761263 - ID_B1 SINE B4 -27 197 83 7 824 1146 267 67 41 chr1 31434170 31434514 -165760918 - ORR1E LTR MaLR 0 359 7 7 824 959 308 15 0 chr1 31434556 31434822 -165760610 - MTE2b LTR MaLR -105 274 5 7 824 468 316 58 0 chr1 31435487 31435642 -165759790 + RMER15 LTR ERVL 412 575 0 7 824 731 257 56 0 chr1 31436013 31436192 -165759240 - B3A SINE B2 -9 189 1 7 824 723 257 0 0 chr1 31436386 31436534 -165758898 + RSINE1 SINE B4 18 165 0 7 824 345 131 0 0 chr1 31436594 31436655 -165758777 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 824 25 0 0 0 chr1 31436671 31436696 -165758736 + AT_rich Low_complexity Low_complexity 1 25 0 7 824 2331 247 78 61 chr1 31436720 31437510 -165757922 + RLTR40 LTR ERVK 1 804 -13 7 824 4857 55 2 7 chr1 31437533 31438152 -165757280 + L1Md_F2 LINE L1 5955 6570 -12 7 824 830 78 0 0 chr1 31438228 31438344 -165757088 - B1_Mus1 SINE Alu -1 147 32 7 824 366 244 11 11 chr1 31438416 31438503 -165756929 + MTD LTR MaLR 88 174 -245 7 824 532 204 36 36 chr1 31438618 31438786 -165756646 - Lx9 LINE L1 0 7644 7477 7 824 341 258 44 22 chr1 31438820 31438955 -165756477 - Lx9 LINE L1 -127 7517 7380 7 824 677 280 23 37 chr1 31440144 31440359 -165755073 - MTE2a LTR MaLR -14 365 154 7 824 2582 69 3 14 chr1 31440362 31440714 -165754718 - L1Md_F2 LINE L1 -12 6570 6223 7 824 28032 21 1 4 chr1 31440754 31445957 -165749475 + L1Md_T LINE L1 416 5585 -298 7 824 8258 40 1 0 chr1 31445958 31446953 -165748479 + L1Md_T LINE L1 5587 6582 0 7 824 866 145 7 0 chr1 31447926 31448078 -165747354 + (CATATA)n Simple_repeat Simple_repeat 1 153 0 7 824 4965 140 95 10 chr1 31449740 31450623 -165744809 + RMER17B LTR ERVK 1 958 0 7 824 429 311 98 72 chr1 31451886 31452203 -165743229 + MLT1C LTR MaLR 1 327 -140 7 824 1864 112 28 22 chr1 31452203 31452523 -165742909 + RLTRETN_Mm LTR ERVK 1 322 0 7 824 429 311 98 72 chr1 31452523 31452551 -165742881 + MLT1C LTR MaLR 328 355 -112 7 824 507 319 28 19 chr1 31452965 31453027 -165742405 - Lx8 LINE L1 -343 7130 7066 7 824 2700 58 11 3 chr1 31453027 31453376 -165742056 + L1_Mus2 LINE L1 6215 6566 0 7 824 507 319 28 19 chr1 31453376 31453524 -165741908 - Lx8 LINE L1 -408 7065 6918 7 824 597 332 48 75 chr1 31453533 31453630 -165741802 + MT2A LTR ERVL 1 92 -441 7 824 832 254 70 0 chr1 31453630 31453831 -165741601 - B3 SINE B2 0 216 2 7 824 597 340 68 74 chr1 31453831 31454227 -165741205 + MT2A LTR ERVL 93 515 0 7 824 288 0 0 0 chr1 31455366 31455398 -165740034 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 7 824 210 179 0 0 chr1 31455407 31455463 -165739969 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 824 4100 83 6 12 chr1 31456334 31456991 -165738441 - L1_Mus3 LINE L1 -707 5931 5275 7 12 3891 129 5 24 chr1 31456991 31457628 -165737804 + L1_Mus3 LINE L1 5976 6600 -38 7 825 213 39 0 0 chr1 31457629 31457655 -165737777 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 7 825 718 211 109 0 chr1 31458043 31458218 -165737214 - URR1B DNA MER1_type 0 225 32 7 825 243 336 81 81 chr1 31458351 31458500 -165736932 - MLT1I LTR MaLR -174 237 89 7 825 369 0 0 0 chr1 31458584 31458625 -165736807 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 825 552 15 0 0 chr1 31459600 31459665 -165735767 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 825 294 238 25 12 chr1 31459782 31459863 -165735569 + CT-rich Low_complexity Low_complexity 3 84 0 8 825 611 330 74 23 chr1 31459877 31460374 -165735058 - L1MA4 LINE L1 -400 5900 5362 8 825 1813 176 16 56 chr1 31460409 31460783 -165734649 + RLTR15 LTR ERVK 1 359 0 8 825 252 238 0 0 chr1 31460818 31460881 -165734551 - L1_Rod LINE L1 -641 5206 5144 8 825 679 288 90 27 chr1 31460864 31461199 -165734233 - L1MA4 LINE L1 -792 5085 4730 8 825 2684 84 18 3 chr1 31462900 31463280 -165732152 - L1_Mus2 LINE L1 0 6566 6181 8 825 369 0 0 0 chr1 31463351 31463392 -165732040 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 8 825 935 279 27 19 chr1 31463688 31463947 -165731485 - Lx6 LINE L1 -566 6894 6634 8 825 186 192 0 0 chr1 31464908 31464960 -165730472 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 825 999 286 100 67 chr1 31465396 31466263 -165729169 + L1_Mur3 LINE L1 1317 2212 -3668 8 825 21 0 0 0 chr1 31466266 31466287 -165729145 + AT_rich Low_complexity Low_complexity 1 21 0 8 825 21 0 0 0 chr1 31466409 31466430 -165729002 + AT_rich Low_complexity Low_complexity 1 21 0 8 825 534 295 20 5 chr1 31466822 31467023 -165728409 + L1_Mur3 LINE L1 2210 2413 -3467 8 825 273 98 0 0 chr1 31467046 31467087 -165728345 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 825 39724 24 2 6 chr1 31467208 31473555 -165721877 - L1Md_T LINE L1 -1 6581 261 8 825 1924 193 60 25 chr1 31473555 31474001 -165721431 - RLTR20B3 LTR ERVK -115 462 1 8 825 1001 316 54 44 chr1 31474160 31474952 -165720480 + Lx8 LINE L1 5096 5927 -1546 8 825 275 49 0 24 chr1 31475019 31475061 -165720371 + (CAA)n Simple_repeat Simple_repeat 3 43 0 8 825 235 260 96 37 chr1 31475323 31475459 -165719973 - LTRIS_Mm LTR ERV1 -49 433 290 8 825 21 0 0 0 chr1 31475952 31475973 -165719459 + AT_rich Low_complexity Low_complexity 1 21 0 8 825 261 155 20 40 chr1 31476186 31476287 -165719145 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 8 825 286 310 11 44 chr1 31476352 31476443 -165718989 - B1F1 SINE Alu -47 102 15 8 825 1343 214 46 230 chr1 31476927 31477601 -165717831 - RMER6C LTR ERVK 0 720 170 8 825 631 145 105 57 chr1 31478165 31478289 -165717143 - RMER6C LTR ERVK -560 130 1 8 825 238 167 12 82 chr1 31478839 31478924 -165716508 + CT-rich Low_complexity Low_complexity 4 82 0 8 825 362 268 61 0 chr1 31478928 31479010 -165716422 - B1F1 SINE Alu -55 94 8 8 825 1974 182 46 24 chr1 31480441 31480857 -165714575 + Lx LINE L1 6229 6653 -1 8 825 239 271 24 0 chr1 31480973 31481058 -165714374 - L1M2 LINE L1 -1483 4660 4574 8 825 1083 78 52 0 chr1 31481068 31481221 -165714211 + L1_Mus4 LINE L1 5838 5998 -638 8 825 270 0 0 0 chr1 31481229 31481259 -165714173 + (CAA)n Simple_repeat Simple_repeat 1 30 0 8 825 631 154 0 13 chr1 31481259 31481370 -165714062 - MTC LTR MaLR -121 300 182 8 825 516 303 191 6 chr1 31481447 31481766 -165713666 - L1_Mur2 LINE L1 -1529 4348 3971 8 825 276 186 0 0 chr1 31481772 31481831 -165713601 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 825 838 336 56 64 chr1 31481867 31482442 -165712990 + Lx8 LINE L1 6338 6907 -566 8 825 3938 159 58 8 chr1 31482741 31483443 -165711989 + RMER19A LTR ERVK 1 737 0 8 825 541 229 104 71 chr1 31484070 31484310 -165711122 + L1MA4 LINE L1 5663 5910 -390 8 825 265 311 33 0 chr1 31484371 31484461 -165710971 + BC1_Mm scRNA scRNA 11 103 -49 8 825 665 262 21 5 chr1 31484685 31484873 -165710559 + L1_Mur3 LINE L1 5376 5566 -314 8 825 3215 170 37 130 chr1 31484879 31485420 -165710012 + MusHAL1 LINE L1 4 553 -2801 8 825 1092 75 7 0 chr1 31485420 31485566 -165709866 + B1_Mm SINE Alu 1 147 0 8 825 3215 110 27 39 chr1 31485566 31486182 -165709250 + MusHAL1 LINE L1 554 1090 -2263 8 825 3582 128 19 36 chr1 31486180 31487167 -165708265 - L1Md_A LINE L1 -4267 1616 654 8 825 2958 104 12 0 chr1 31487173 31487594 -165707838 + L1_Mus1 LINE L1 6140 6565 -2 8 825 208 254 0 0 chr1 31487598 31487653 -165707779 + A-rich Low_complexity Low_complexity 1 55 0 8 825 4967 110 39 2 chr1 31487731 31488180 -165707252 - L1VL4 LINE L1 -1853 1964 1492 8 825 261 0 0 0 chr1 31488180 31488209 -165707223 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 825 4967 179 16 29 chr1 31488209 31489462 -165705970 - L1VL4 LINE L1 -2326 1491 126 8 825 24 32 0 0 chr1 31489620 31489651 -165705781 + AT_rich Low_complexity Low_complexity 1 31 0 8 825 492 18 0 0 chr1 31489676 31489733 -165705699 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 825 810 91 21 0 chr1 31491654 31491797 -165703635 + (GA)n Simple_repeat Simple_repeat 2 147 0 8 825 1393 186 20 4 chr1 31492254 31492508 -165702924 + RMER6B LTR ERVK 196 453 -8 8 825 4099 183 58 12 chr1 31492513 31493375 -165702057 - L1_Mur3 LINE L1 -62 5818 4917 8 825 3267 143 32 15 chr1 31493378 31493465 -165701967 - Lx LINE L1 -8 6646 6560 8 825 2716 58 3 3 chr1 31493465 31493810 -165701622 + IAPLTR4 LTR ERVK 1 345 0 8 825 3267 143 32 15 chr1 31493810 31494260 -165701172 - Lx LINE L1 -95 6559 6100 8 825 198 0 0 0 chr1 31494276 31494298 -165701134 + (T)n Simple_repeat Simple_repeat 1 22 0 8 825 557 101 0 0 chr1 31494336 31494415 -165701017 + MT2B2 LTR ERVL 506 584 0 8 825 1593 277 61 3 chr1 31494422 31494949 -165700483 - L1_Mur3 LINE L1 -7084 628 1 8 825 578 324 14 17 chr1 31495169 31495461 -165699971 - L1M2 LINE L1 -980 5163 4873 8 825 2392 170 31 18 chr1 31496045 31496556 -165698876 - RMER6A LTR ERVK -3 753 139 8 825 1588 255 152 21 chr1 31496799 31497280 -165698152 + RMER15 LTR ERVL 3 546 -29 8 825 447 327 31 74 chr1 31497334 31497496 -165697936 - B4A SINE B4 -133 159 5 8 825 1213 194 135 17 chr1 31498097 31498140 -165697292 - Lx9 LINE L1 0 7644 7603 8 825 2755 93 28 15 chr1 31498140 31498531 -165696901 + MTA_Mm LTR MaLR 1 396 0 8 825 1213 194 135 17 chr1 31498531 31498834 -165696598 - Lx9 LINE L1 -42 7602 7257 8 825 343 298 65 37 chr1 31500632 31500740 -165694692 - PB1D7 SINE Alu -1 119 9 1 825 369 0 0 0 chr1 31500865 31500906 -165694526 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 825 3385 59 25 0 chr1 31501369 31501810 -165693622 - L1_Mus1 LINE L1 0 6567 6116 3 825 4363 75 5 2 chr1 31501810 31502382 -165693050 - L1_Mus3 LINE L1 -24 6614 6041 4 825 2351 57 0 3 chr1 31502416 31502713 -165692719 + L1_Mus3 LINE L1 5589 5884 -754 5 825 991 132 7 0 chr1 31503484 31503635 -165691797 + Lx3B LINE L1 6696 6847 -126 6 825 27 0 0 0 chr1 31503635 31503662 -165691770 + AT_rich Low_complexity Low_complexity 1 27 0 7 825 696 45 0 0 chr1 31504332 31504420 -165691012 + (CCCCAG)n Simple_repeat Simple_repeat 3 90 0 8 825 208 80 18 91 chr1 31504634 31504689 -165690743 + (TTATA)n Simple_repeat Simple_repeat 5 55 0 9 825 1128 318 14 10 chr1 31504874 31505363 -165690069 - L1M2 LINE L1 -2312 3831 3341 1 825 311 113 19 0 chr1 31506959 31507012 -165688420 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 825 384 336 9 0 chr1 31507191 31507298 -165688134 - RSINE1 SINE B4 -2 163 56 1 825 453 215 16 47 chr1 31508773 31508900 -165686532 - RMER1C Other Other -2 1340 1218 1 825 269 288 48 56 chr1 31510237 31510362 -165685070 + MIRb SINE MIR 82 205 -63 1 825 288 0 0 0 chr1 31510537 31510569 -165684863 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 825 299 335 121 6 chr1 31510618 31510792 -165684640 + LTR16A LTR ERVL 183 376 -75 1 825 36529 26 3 8 chr1 31511341 31516492 -165678940 + L1Md_A LINE L1 469 5586 -297 1 825 8265 38 2 0 chr1 31516492 31517486 -165677946 + L1Md_A LINE L1 5587 6582 0 1 825 950 279 0 19 chr1 31517526 31517734 -165677698 - B3 SINE B2 -6 210 7 1 825 23 0 0 0 chr1 31518785 31518808 -165676624 + AT_rich Low_complexity Low_complexity 1 23 0 2 825 313 369 45 20 chr1 31519548 31519750 -165675682 + MIRb SINE MIR 4 210 -58 2 825 312 27 0 0 chr1 31519883 31519920 -165675512 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 825 361 236 43 52 chr1 31520307 31520414 -165675018 + PB1D9 SINE Alu 5 112 -8 2 825 1216 73 0 22 chr1 31520414 31520597 -165674835 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 825 621 0 0 0 chr1 31520597 31520666 -165674766 + (GGGA)n Simple_repeat Simple_repeat 2 70 0 2 825 569 230 64 7 chr1 31520692 31520832 -165674600 + B3A SINE B2 3 150 -48 2 825 315 0 0 0 chr1 31520844 31520879 -165674553 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 825 21 71 0 0 chr1 31520879 31520921 -165674511 + AT_rich Low_complexity Low_complexity 1 42 0 2 825 1230 247 42 85 chr1 31521384 31521808 -165673624 - MTD LTR MaLR -13 406 1 2 825 902 239 25 0 chr1 31522860 31523061 -165672371 - B3 SINE B2 -6 210 5 3 825 683 206 77 14 chr1 31523795 31524002 -165671430 + Lx9 LINE L1 7306 7525 -119 3 825 496 0 31 0 chr1 31524002 31524066 -165671366 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 3 825 419 179 80 0 chr1 31524113 31524225 -165671207 + Lx9 LINE L1 7517 7637 -7 3 825 945 305 73 12 chr1 31524270 31524599 -165670833 - MTE2b LTR MaLR -13 366 18 3 825 419 177 41 0 chr1 31525188 31525335 -165670097 + (TCTCTG)n Simple_repeat Simple_repeat 2 154 0 3 825 52 0 0 0 chr1 31526143 31526195 -165669237 + AT_rich Low_complexity Low_complexity 1 52 0 3 825 23 33 0 0 chr1 31526246 31526276 -165669156 + AT_rich Low_complexity Low_complexity 1 30 0 3 825 27 0 0 0 chr1 31526554 31526581 -165668851 + AT_rich Low_complexity Low_complexity 1 27 0 3 825 303 113 42 0 chr1 31526630 31526701 -165668731 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 825 320 144 56 21 chr1 31526702 31526844 -165668588 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 3 825 3150 71 94 0 chr1 31526882 31527316 -165668116 + IAPLTR2_Mm LTR ERVK 1 475 0 4 825 1038 109 15 85 chr1 31527317 31527518 -165667914 + IAPEz-int LTR ERVK 9 195 -6286 4 825 227 267 0 0 chr1 31527526 31527571 -165667861 + RLTR27 LTR ERVK 231 275 -34 4 825 3889 55 2 18 chr1 31527571 31528074 -165667358 + IAPEz-int LTR ERVK 168 662 -5819 4 825 979 50 0 0 chr1 31528074 31528193 -165667239 + IAPEz-int LTR ERVK 1359 1477 -5004 4 825 1882 91 8 0 chr1 31528188 31528440 -165666992 + IAPEz-int LTR ERVK 2244 2497 -5183 4 825 14354 57 5 6 chr1 31528458 31530261 -165665171 + IAPEz-int LTR ERVK 4678 6479 -2 4 825 3137 74 94 0 chr1 31530263 31530697 -165664735 + IAPLTR2_Mm LTR ERVK 1 475 0 4 825 435 309 11 0 chr1 31530712 31530806 -165664626 - RSINE1 SINE B4 -70 95 1 4 825 1275 68 0 0 chr1 31531018 31531180 -165664252 - L1_Mus1 LINE L1 -229 6338 6177 4 825 1687 39 0 0 chr1 31531180 31531387 -165664045 + L1_Mus1 LINE L1 6361 6567 0 4 825 198 0 0 0 chr1 31531677 31531699 -165663733 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 825 225 315 27 0 chr1 31531926 31531999 -165663433 + MER3 DNA MER1_type 8 82 -127 4 825 260 325 12 0 chr1 31532411 31532491 -165662941 - MER5B DNA MER1_type -26 152 72 4 825 187 227 23 0 chr1 31532612 31532656 -165662776 - MER5A DNA MER1_type -2 187 143 4 825 462 211 35 9 chr1 31534171 31534286 -165661146 - MamRep605 Unknown Unknown -716 160 43 4 825 7813 229 72 33 chr1 31535734 31537764 -165657668 + Lx7 LINE L1 5588 7696 0 5 825 216 204 20 0 chr1 31538317 31538366 -165657066 + CT-rich Low_complexity Low_complexity 2 51 0 5 825 260 304 52 0 chr1 31538943 31539058 -165656374 - Lx9 LINE L1 -141 7503 7383 5 825 359 340 87 29 chr1 31539074 31539350 -165656082 - L1MEf LINE L1 -4500 1700 1409 5 825 26 50 0 0 chr1 31539946 31539986 -165655446 + AT_rich Low_complexity Low_complexity 1 40 0 5 825 553 267 67 0 chr1 31539986 31540151 -165655281 - RMER15 LTR ERVL -24 551 376 5 825 202 208 18 36 chr1 31540525 31540580 -165654852 + (TATG)n Simple_repeat Simple_repeat 2 55 0 5 825 23 0 0 0 chr1 31540628 31540651 -165654781 + AT_rich Low_complexity Low_complexity 1 23 0 5 825 447 311 32 19 chr1 31541056 31541210 -165654222 - RMER20A LTR ERVK -355 161 6 5 825 245 98 0 24 chr1 31541668 31541710 -165653722 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 5 825 647 308 120 54 chr1 31542459 31542666 -165652766 + Lx9 LINE L1 6769 6972 -672 6 825 830 38 9 0 chr1 31542666 31542772 -165652660 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 6 825 647 310 116 54 chr1 31542772 31543129 -165652303 + Lx9 LINE L1 6973 7356 -288 6 825 38902 37 3 7 chr1 31543156 31549536 -165645896 - L1Md_T LINE L1 -1 6581 232 6 825 420 246 0 0 chr1 31549639 31549761 -165645671 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 825 22 0 0 0 chr1 31549776 31549798 -165645634 + AT_rich Low_complexity Low_complexity 1 22 0 6 825 21 71 0 0 chr1 31551221 31551263 -165644169 + AT_rich Low_complexity Low_complexity 1 42 0 6 825 860 154 25 0 chr1 31551686 31551848 -165643584 + L1_Mur3 LINE L1 5245 5410 -470 6 825 286 273 107 18 chr1 31552623 31552735 -165642697 + RMER15 LTR ERVL 454 575 0 6 825 384 162 40 0 chr1 31553497 31553596 -165641836 + (CATATA)n Simple_repeat Simple_repeat 1 103 0 6 825 304 343 10 10 chr1 31553812 31553915 -165641517 - L4 LINE RTE -518 1511 1409 6 825 247 172 17 17 chr1 31554692 31554751 -165640681 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 7 825 437 271 53 23 chr1 31554945 31555077 -165640355 - B3A SINE B2 -61 137 2 7 825 215 283 0 0 chr1 31555641 31555694 -165639738 - L4 LINE RTE -1591 438 386 6 825 515 16 16 0 chr1 31555704 31555768 -165639664 + (GAAAA)n Simple_repeat Simple_repeat 1 65 0 7 825 1058 96 0 6 chr1 31555770 31555928 -165639504 + (GGAA)n Simple_repeat Simple_repeat 3 159 0 7 825 1732 184 61 44 chr1 31557145 31557634 -165637798 + RMER17B LTR ERVK 4 516 -442 7 825 33105 76 4 5 chr1 31557638 31560021 -165635411 - L1Md_F2 LINE L1 -12 6570 4195 7 825 414 0 0 0 chr1 31560021 31560067 -165635365 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 825 33105 96 20 4 chr1 31560067 31563822 -165631610 - L1Md_F2 LINE L1 -1689 4194 375 7 825 1770 205 120 16 chr1 31563822 31564264 -165631168 + RMER17B LTR ERVK 471 958 0 7 825 308 326 179 36 chr1 31564414 31564716 -165630716 + L1MEc LINE L1 37 381 -6019 7 825 444 224 18 0 chr1 31564918 31565088 -165630344 + (TA)n Simple_repeat Simple_repeat 1 173 0 7 825 655 337 14 10 chr1 31565092 31565299 -165630133 - Lx9 LINE L1 -1014 6630 6423 7 825 204 229 36 12 chr1 31565321 31565405 -165630027 + (TA)n Simple_repeat Simple_repeat 2 87 0 8 825 29 0 0 0 chr1 31565438 31565467 -165629965 + AT_rich Low_complexity Low_complexity 1 29 0 8 825 962 51 29 0 chr1 31565467 31565605 -165629827 - L1Md_F2 LINE L1 -2 6580 6439 8 825 667 87 11 0 chr1 31565605 31565697 -165629735 + L1_Mus1 LINE L1 6312 6404 -163 8 825 1140 264 54 31 chr1 31565977 31566368 -165629064 - Lx9 LINE L1 -91 5756 5357 7 825 1648 215 43 222 chr1 31566479 31567222 -165628210 + RMER19C LTR ERVK 2 611 0 8 825 7962 91 3 9 chr1 31567488 31568883 -165626549 - L1_Mus1 LINE L1 -183 6384 5002 8 825 197 0 71 0 chr1 31568883 31568911 -165626521 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 825 1051 95 0 0 chr1 31568911 31569048 -165626384 - B1_Mus2 SINE Alu -9 138 2 8 825 7962 115 1 17 chr1 31569048 31569366 -165626066 - L1_Mus1 LINE L1 -882 5001 4686 8 825 3214 134 2 2 chr1 31569367 31569883 -165625549 - L1_Mus1 LINE L1 -3013 2870 2355 8 825 771 35 17 17 chr1 31571170 31571200 -165624232 + (GAA)n Simple_repeat Simple_repeat 2 32 0 8 825 1122 125 0 0 chr1 31571200 31571376 -165624056 + (GGA)n Simple_repeat Simple_repeat 3 178 0 8 825 771 35 17 17 chr1 31571376 31571461 -165623971 + (GAA)n Simple_repeat Simple_repeat 3 87 0 9 825 495 0 0 0 chr1 31571713 31571768 -165623664 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 825 387 60 0 0 chr1 31571768 31571817 -165623615 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 825 275 243 154 10 chr1 31571976 31572112 -165623320 + MLT1E1A LTR MaLR 397 650 -30 9 825 25 0 0 0 chr1 31572116 31572141 -165623291 + AT_rich Low_complexity Low_complexity 1 25 0 9 825 293 287 89 0 chr1 31573380 31573481 -165621951 + B1F SINE Alu 38 147 -2 9 825 258 316 76 38 chr1 31573490 31573569 -165621863 + ID4_ SINE ID 1 82 -1 9 825 333 303 45 62 chr1 31573990 31574166 -165621266 - RLTR42-int LTR ERVK -4194 1328 1156 9 825 405 0 0 0 chr1 31574179 31574224 -165621208 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 825 225 274 74 0 chr1 31574288 31574383 -165621049 + L1MA7 LINE L1 6184 6285 -6 9 825 616 138 17 0 chr1 31575151 31575267 -165620165 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 825 435 269 77 55 chr1 31575758 31575939 -165619493 - B3 SINE B2 -4 212 28 1 825 31 0 0 0 chr1 31576086 31576117 -165619315 + AT_rich Low_complexity Low_complexity 1 31 0 1 825 342 147 0 0 chr1 31576416 31576484 -165618948 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 825 705 121 0 0 chr1 31576486 31576610 -165618822 + (GA)n Simple_repeat Simple_repeat 2 125 0 1 825 220 213 0 16 chr1 31576619 31576681 -165618751 + GA-rich Low_complexity Low_complexity 1 61 0 1 825 1893 135 10 3 chr1 31576776 31577073 -165618359 - L1_Mus3 LINE L1 0 6638 6340 1 825 9178 50 2 2 chr1 31577849 31579713 -165615719 - L1Md_F2 LINE L1 -4 6578 4713 1 825 28727 136 16 19 chr1 31579973 31585824 -165609608 + L1_Mus2 LINE L1 220 6051 -515 1 825 523 113 0 0 chr1 31585817 31585888 -165609544 + L1_Mus2 LINE L1 6345 6415 -152 1 825 3647 77 0 2 chr1 31585873 31586344 -165609088 - L1_Mus2 LINE L1 -205 6361 5892 1 825 879 87 16 0 chr1 31586346 31586473 -165608959 + L1_Mus2 LINE L1 6435 6563 -3 1 825 24 32 0 0 chr1 31586636 31586667 -165608765 + AT_rich Low_complexity Low_complexity 1 31 0 1 825 399 41 0 0 chr1 31586887 31586936 -165608496 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 103 7440 156 36 10 chr1 31587069 31588357 -165607075 - Lx2B LINE L1 -5 6995 5675 1 826 586 301 91 27 chr1 31588717 31588980 -165606452 + MamRep605 Unknown Unknown 394 673 -203 1 826 261 318 87 12 chr1 31589407 31589579 -165605853 - L1MEc LINE L1 -6002 398 214 1 826 681 291 23 37 chr1 31589598 31589812 -165605620 + B3 SINE B2 6 216 0 1 826 889 342 78 22 chr1 31589818 31590230 -165605202 - MER31B LTR ERV1 -31 435 1 1 826 453 303 72 30 chr1 31591828 31592090 -165603342 - Tigger6a DNA MER2_type 0 1083 811 1 826 393 101 381 0 chr1 31592090 31592187 -165603245 + Lx9 LINE L1 7323 7456 -188 1 826 234 0 0 0 chr1 31592197 31592223 -165603209 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 826 498 114 0 0 chr1 31592474 31592553 -165602879 + (TATG)n Simple_repeat Simple_repeat 4 82 0 1 826 592 336 126 12 chr1 31592576 31592823 -165602609 - B4A SINE B4 -16 276 2 1 826 977 314 105 42 chr1 31592825 31593193 -165602239 - Tigger6a DNA MER2_type -442 641 245 1 826 685 63 0 0 chr1 31593193 31593288 -165602144 + L1_Mus2 LINE L1 6471 6565 -1 1 826 977 314 105 42 chr1 31593288 31593521 -165601911 - Tigger6a DNA MER2_type -839 244 3 1 826 462 190 0 0 chr1 31593648 31593764 -165601668 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 826 477 286 45 108 chr1 31593771 31593928 -165601504 - RSINE1 SINE B4 0 165 19 1 826 237 333 0 17 chr1 31594486 31594544 -165600888 + B4 SINE B4 97 153 -139 1 826 9126 122 28 8 chr1 31595353 31596982 -165598450 + Lx2A1 LINE L1 5344 7002 -6 1 826 303 140 0 0 chr1 31596983 31597033 -165598399 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 826 396 218 6 11 chr1 31597180 31597361 -165598071 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 826 544 168 29 0 chr1 31597374 31597547 -165597885 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 826 39 0 0 0 chr1 31598392 31598431 -165597001 + AT_rich Low_complexity Low_complexity 1 39 0 1 826 3330 36 8 0 chr1 31598690 31599083 -165596349 - MTA_Mm LTR MaLR 0 396 1 1 826 9073 41 1 0 chr1 31599083 31600180 -165595252 - MTA_Mm-int LTR MaLR 0 1098 1 1 826 3372 35 0 0 chr1 31600182 31600576 -165594856 - MTA_Mm LTR MaLR -2 394 1 1 826 4445 77 17 2 chr1 31601576 31602178 -165593254 - L1Md_F2 LINE L1 -4 6578 5968 1 826 36240 71 8 2 chr1 31602884 31609250 -165586182 - L1Md_F3 LINE L1 -10 6574 214 1 826 429 298 83 0 chr1 31610657 31610825 -165584607 - B3A SINE B2 -16 182 1 1 826 638 287 72 0 chr1 31610854 31611049 -165584383 + B3 SINE B2 1 209 -7 1 826 2104 233 95 18 chr1 31611362 31611491 -165583941 - Lx9 LINE L1 -2 7642 7500 1 826 381 22 0 0 chr1 31611491 31611537 -165583895 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 826 2104 233 95 18 chr1 31611537 31612006 -165583426 - Lx9 LINE L1 -145 7499 6998 1 826 333 282 27 0 chr1 31612619 31612744 -165582688 + L1MEg LINE L1 923 1036 -5189 1 826 22 0 0 0 chr1 31613315 31613337 -165582095 + AT_rich Low_complexity Low_complexity 1 22 0 1 826 285 29 0 0 chr1 31613768 31613802 -165581630 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 826 4887 111 41 96 chr1 31613826 31614785 -165580647 + RMER17A2 LTR ERVK 1 906 0 1 826 711 24 0 0 chr1 31614868 31614953 -165580479 + (TTC)n Simple_repeat Simple_repeat 2 86 0 1 826 481 336 81 61 chr1 31615335 31615582 -165579850 - B4A SINE B4 -36 256 5 1 826 1026 248 96 43 chr1 31615623 31616019 -165579413 - MTD LTR MaLR -2 417 1 1 826 714 226 169 32 chr1 31616022 31616360 -165579072 - MTD-int LTR MaLR -3 1255 872 1 826 2334 56 0 0 chr1 31617681 31617968 -165577464 - L1_Mus3 LINE L1 -239 6399 6113 1 826 1499 64 32 5 chr1 31617968 31618187 -165577245 + L1_Mus3 LINE L1 6414 6638 0 1 826 252 0 0 0 chr1 31618416 31618444 -165576988 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 826 633 27 0 0 chr1 31618444 31618518 -165576914 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 826 1996 266 32 75 chr1 31618662 31619413 -165576019 - MTD-int LTR MaLR -410 848 130 1 826 267 356 23 0 chr1 31619563 31619650 -165575782 + MT2A LTR ERVL 338 426 -107 1 826 675 314 35 0 chr1 31619757 31619929 -165575503 - MTD LTR MaLR -47 372 195 1 826 5367 111 34 1 chr1 31619938 31620758 -165574674 - L1_Mus4 LINE L1 -10 6626 5780 1 826 9245 70 13 8 chr1 31620772 31621884 -165573548 - L1_Mus2 LINE L1 -1 6565 5458 1 826 237 33 0 0 chr1 31621884 31621914 -165573518 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 826 1064 75 0 0 chr1 31621914 31622048 -165573384 - B1_Mm SINE Alu -13 134 1 1 826 9245 127 16 12 chr1 31622048 31623068 -165572364 - L1_Mus2 LINE L1 -426 5457 4423 1 826 2965 132 16 12 chr1 31623054 31623545 -165571887 - L1_Mus2 LINE L1 -77 5806 5314 1 826 366 122 203 4 chr1 31623544 31623629 -165571803 - L1_Mur2 LINE L1 -1469 2445 2344 1 826 304 246 0 0 chr1 31623636 31623697 -165571735 - ORR1D-int LTR MaLR -355 1015 955 1 826 1118 312 42 22 chr1 31623705 31624108 -165571324 - Lx8 LINE L1 -856 6617 6207 1 826 443 305 66 6 chr1 31624147 31624306 -165571126 + Lx8 LINE L1 6921 7108 -365 1 826 204 45 21 62 chr1 31624522 31624570 -165570862 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 826 25 31 0 0 chr1 31625066 31625098 -165570334 + AT_rich Low_complexity Low_complexity 1 32 0 1 826 2544 80 8 11 chr1 31625340 31625693 -165569739 + Lx3A LINE L1 6167 6518 -463 1 826 550 91 0 0 chr1 31625691 31625768 -165569664 - L1_Mus4 LINE L1 -319 6317 6241 1 826 439 163 12 0 chr1 31625767 31625853 -165569579 + L1_Mus4 LINE L1 6525 6611 -25 1 826 369 0 0 0 chr1 31625854 31625895 -165569537 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1 826 1979 104 31 0 chr1 31625895 31626182 -165569250 + Lx3A LINE L1 6511 6806 -175 1 826 525 329 83 55 chr1 31626456 31626747 -165568685 + B4 SINE B4 2 278 -14 1 826 272 96 0 37 chr1 31626788 31626842 -165568590 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1 826 260 53 26 0 chr1 31627051 31627089 -165568343 + (GGGAGA)n Simple_repeat Simple_repeat 4 42 0 1 826 707 304 21 0 chr1 31627754 31627948 -165567484 - B3 SINE B2 -7 209 12 1 826 475 146 31 0 chr1 31628018 31628114 -165567318 + CT-rich Low_complexity Low_complexity 3 101 0 1 826 1780 233 55 60 chr1 31628139 31628709 -165566723 + RLTR31_Mur LTR ERVK 11 553 0 1 826 565 215 13 0 chr1 31628716 31628865 -165566567 + CT-rich Low_complexity Low_complexity 3 153 0 1 826 4082 112 143 79 chr1 31628947 31629273 -165566159 + RMER17A2 LTR ERVK 1 322 -584 1 826 527 43 14 0 chr1 31629273 31629343 -165566089 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 826 207 0 0 0 chr1 31629343 31629365 -165566067 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 826 4082 112 143 79 chr1 31629365 31629888 -165565544 + RMER17A2 LTR ERVK 323 905 -1 1 826 2020 272 151 10 chr1 31629888 31630683 -165564749 - Lx6 LINE L1 -58 7402 6280 1 826 914 236 24 38 chr1 31630686 31630948 -165564484 + Lx6 LINE L1 5801 6053 -1407 1 826 23 0 0 0 chr1 31631045 31631068 -165564364 + AT_rich Low_complexity Low_complexity 1 23 0 1 826 3483 87 2 2 chr1 31631068 31631541 -165563891 - L1_Mus1 LINE L1 -3 6564 6092 1 826 1629 274 64 24 chr1 31631733 31632279 -165563153 + Lx7 LINE L1 6537 7104 -592 1 826 186 43 0 0 chr1 31633630 31633653 -165561779 + (T)n Simple_repeat Simple_repeat 1 23 0 1 826 2481 238 146 7 chr1 31634019 31634784 -165560648 + Lx9 LINE L1 6509 7380 -264 1 826 376 200 39 23 chr1 31634788 31634916 -165560516 + Lx9 LINE L1 7514 7643 -1 1 826 2401 226 45 60 chr1 31635026 31635698 -165559734 - Lx7 LINE L1 -15 7681 7020 1 826 340 244 48 24 chr1 31635711 31635795 -165559637 + RLTR21 LTR ERVK 1 86 -1486 1 826 244 271 47 12 chr1 31636168 31636254 -165559178 - L1MA4 LINE L1 -363 5937 5849 1 826 3284 171 16 18 chr1 31636361 31636932 -165558500 - RMER19A LTR ERVK 0 737 180 1 826 257 128 21 0 chr1 31636935 31636982 -165558450 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 826 208 231 0 0 chr1 31637037 31637076 -165558356 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 826 2909 80 10 0 chr1 31637348 31637738 -165557694 - L1_Mus2 LINE L1 -1 6565 6172 1 826 390 103 0 0 chr1 31637738 31637796 -165557636 + L1_Mus2 LINE L1 6083 6140 -426 1 826 327 375 90 29 chr1 31637796 31638106 -165557326 + MLT1E1A LTR MaLR 313 641 -39 1 826 201 74 0 0 chr1 31638272 31638299 -165557133 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 826 24 0 0 0 chr1 31638410 31638434 -165556998 + AT_rich Low_complexity Low_complexity 1 24 0 1 826 1126 89 6 6 chr1 31638845 31639015 -165556417 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 1 826 4706 140 5 4 chr1 31639016 31639768 -165555664 - Lx2 LINE L1 -6 6991 6239 1 826 232 228 17 34 chr1 31640251 31640310 -165555122 + B1_Mur3 SINE Alu 89 146 -3 1 826 246 62 0 0 chr1 31640626 31640658 -165554774 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 826 277 272 36 36 chr1 31640702 31640786 -165554646 + MLT1B LTR MaLR 277 360 -30 1 826 322 299 50 2 chr1 31640850 31641025 -165554407 - L1MD LINE L1 -3540 2606 2426 1 826 15373 5 0 0 chr1 31641368 31643108 -165552324 - L1_Mm LINE L1 -412 5471 3732 1 826 876 0 0 0 chr1 31643105 31643200 -165552232 + L1_Mm LINE L1 5492 5586 -297 1 826 9046 1 0 0 chr1 31643200 31644196 -165551236 + L1Md_A LINE L1 5587 6582 0 1 826 500 343 60 36 chr1 31644225 31644609 -165550823 + L1M5 LINE L1 5281 5673 -500 1 826 1709 221 70 76 chr1 31646057 31646517 -165548915 - RMER4A LTR ERVK -4 462 6 1 826 3271 205 275 16 chr1 31646621 31646810 -165548622 - L1_Mur3 LINE L1 -2219 3661 3472 1 826 216 0 0 0 chr1 31646810 31646834 -165548598 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 826 5431 112 63 3 chr1 31646834 31647795 -165547637 - L1_Mur3 LINE L1 -2409 3471 2206 1 826 4189 168 4 53 chr1 31647782 31648623 -165546809 - L1VL1 LINE L1 -5407 1015 217 2 826 207 312 0 15 chr1 31649948 31650013 -165545419 - MER5A DNA MER1_type -113 76 13 2 826 225 250 19 0 chr1 31651227 31651279 -165544153 + GA-rich Low_complexity Low_complexity 3 55 0 2 826 23 0 0 0 chr1 31651585 31651608 -165543824 + AT_rich Low_complexity Low_complexity 1 23 0 2 826 805 262 112 35 chr1 31651923 31652543 -165542889 + L1_Rod LINE L1 5061 5779 -521 2 826 738 78 0 0 chr1 31653473 31653575 -165541857 + (TC)n Simple_repeat Simple_repeat 1 102 0 2 826 343 317 0 90 chr1 31653581 31653692 -165541740 - B1F SINE Alu -44 105 5 2 826 23 0 0 0 chr1 31654073 31654096 -165541336 + AT_rich Low_complexity Low_complexity 1 23 0 2 826 1036 109 7 7 chr1 31654096 31654244 -165541188 - B1_Mus1 SINE Alu 0 148 1 2 826 974 71 0 14 chr1 31654648 31654791 -165540641 + L1_Mus2 LINE L1 6426 6566 0 2 826 1224 101 0 0 chr1 31655219 31655397 -165540035 + (TTC)n Simple_repeat Simple_repeat 1 178 0 2 826 420 339 135 6 chr1 31656227 31656539 -165538893 - L1M4c LINE L1 -1610 4769 4418 2 826 610 329 68 26 chr1 31656589 31657163 -165538269 - L1M4c LINE L1 -2036 4340 3743 2 826 578 349 75 51 chr1 31657208 31657543 -165537889 - Lx8 LINE L1 -60 7413 7071 2 826 6681 83 52 5 chr1 31657575 31658532 -165536900 - RLTR13D5 LTR ERVK -20 1003 2 2 826 469 208 124 10 chr1 31658562 31658659 -165536773 - B3A SINE B2 -67 131 24 2 826 1417 323 26 56 chr1 31658782 31658955 -165536477 - Lx8 LINE L1 -1548 5925 5760 2 826 2025 49 80 0 chr1 31658955 31659218 -165536214 + L1_Mus1 LINE L1 6280 6563 -4 2 826 1417 312 33 53 chr1 31659218 31659899 -165535533 - Lx8 LINE L1 -121 5759 5087 2 826 180 0 0 0 chr1 31660010 31660030 -165535402 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 826 344 313 47 75 chr1 31660251 31660465 -165534967 - L1M4c LINE L1 -4731 1653 1446 2 826 421 333 36 88 chr1 31660477 31660671 -165534761 - B3A SINE B2 0 198 15 2 826 909 237 0 0 chr1 31660639 31660812 -165534620 - MTD LTR MaLR -241 178 6 2 826 279 250 0 30 chr1 31660990 31661056 -165534376 - RSINE1 SINE B4 -99 66 3 2 826 292 72 72 0 chr1 31662292 31662361 -165533071 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 826 220 264 35 0 chr1 31663371 31663458 -165531974 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 826 24 0 0 0 chr1 31663543 31663567 -165531865 + AT_rich Low_complexity Low_complexity 1 24 0 2 826 423 119 0 0 chr1 31663953 31664020 -165531412 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 826 841 319 55 40 chr1 31664027 31664504 -165530928 - Lx9 LINE L1 -227 7417 6934 2 826 4739 104 18 32 chr1 31664501 31665286 -165530146 - MusHAL1 LINE L1 -344 2368 1595 2 826 1512 97 83 30 chr1 31665289 31665554 -165529878 + L1_Mus3 LINE L1 6357 6635 -3 2 826 946 329 50 35 chr1 31665556 31665992 -165529440 - Lx9 LINE L1 -757 6887 6358 2 826 23 33 0 0 chr1 31666226 31666256 -165529176 + AT_rich Low_complexity Low_complexity 1 30 0 2 826 258 284 171 42 chr1 31666516 31666733 -165528699 + LTR37A LTR ERV1 33 277 -149 2 826 581 160 111 8 chr1 31667682 31667808 -165527624 + Lx2 LINE L1 6838 6976 -21 2 826 230 237 34 0 chr1 31668377 31668436 -165526996 + CT-rich Low_complexity Low_complexity 2 62 0 2 826 216 320 22 13 chr1 31668942 31669045 -165526387 + MIR SINE MIR 122 233 -35 2 826 21 36 0 0 chr1 31669172 31669200 -165526232 + AT_rich Low_complexity Low_complexity 1 28 0 2 826 243 206 58 14 chr1 31669212 31669281 -165526151 + L1MA4A LINE L1 5869 5940 -363 2 826 242 218 0 71 chr1 31669374 31669458 -165525974 + L1MA4A LINE L1 6221 6298 -2 2 826 1198 54 0 0 chr1 31669623 31669770 -165525662 + B1_Mus2 SINE Alu 1 147 0 2 826 414 57 0 0 chr1 31669770 31669823 -165525609 + (A)n Simple_repeat Simple_repeat 1 53 0 2 826 4899 72 0 9 chr1 31670201 31670851 -165524581 - L1Md_F3 LINE L1 -8 6576 5933 2 826 7094 38 1 4 chr1 31670852 31671759 -165523673 + L1Md_F3 LINE L1 5017 5922 -660 2 826 1460 49 54 0 chr1 31673904 31674089 -165521343 + B2_Mm2 SINE B2 1 195 0 2 826 1260 311 88 28 chr1 31674234 31675228 -165520204 + L1M2 LINE L1 2593 3646 -2497 2 826 5576 118 27 13 chr1 31675233 31675818 -165519614 - Lx LINE L1 -200 6454 5866 2 826 207 0 0 0 chr1 31675818 31675841 -165519591 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 826 6640 161 8 3 chr1 31675841 31676999 -165518433 - Lx LINE L1 -789 5865 4697 2 826 7319 160 9 171 chr1 31677012 31677543 -165517889 + L1_Mur1 LINE L1 3020 3481 -2405 2 826 1167 62 0 0 chr1 31677543 31677689 -165517743 + B1_Mus1 SINE Alu 3 148 0 2 826 7319 160 9 171 chr1 31677689 31679246 -165516186 + L1_Mur1 LINE L1 3482 4770 -1116 2 826 242 239 72 29 chr1 31679246 31679315 -165516117 + MT2B LTR ERVL 229 300 -301 2 826 383 76 46 53 chr1 31679329 31679481 -165515951 + (CAAA)n Simple_repeat Simple_repeat 2 152 0 2 826 1922 108 0 0 chr1 31679483 31679760 -165515672 + L1_Mm LINE L1 4783 5059 -824 2 826 700 133 19 32 chr1 31679763 31679918 -165515514 + L1_Mus3 LINE L1 6484 6636 -2 2 826 24 53 0 0 chr1 31679953 31679991 -165515441 + AT_rich Low_complexity Low_complexity 1 38 0 2 826 295 229 162 30 chr1 31680481 31680580 -165514852 + B1_Mur4 SINE Alu 11 122 -28 2 826 607 79 56 0 chr1 31680580 31680669 -165514763 + Lx4A LINE L1 5604 5697 -1361 2 826 309 346 44 25 chr1 31681064 31681224 -165514208 - RSINE1 SINE B4 -1 164 2 2 826 1128 71 0 0 chr1 31681376 31681517 -165513915 - B1_Mm SINE Alu -6 141 1 2 826 221 210 16 0 chr1 31681601 31681663 -165513769 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 826 21 36 0 0 chr1 31681824 31681852 -165513580 + AT_rich Low_complexity Low_complexity 1 28 0 2 826 658 214 8 22 chr1 31682592 31682726 -165512706 + B1_Mm SINE Alu 3 134 -13 2 826 5982 83 0 0 chr1 31683471 31684264 -165511168 + L1_Mus2 LINE L1 5774 6566 0 2 826 1016 75 7 52 chr1 31684307 31684461 -165510971 - B1_Mus2 SINE Alu 0 147 1 2 826 338 243 14 0 chr1 31685028 31685102 -165510330 + Lx8 LINE L1 7173 7247 -226 2 826 825 56 0 0 chr1 31686108 31686215 -165509217 + (GGGA)n Simple_repeat Simple_repeat 4 110 0 2 826 652 115 35 0 chr1 31687142 31687255 -165508177 + ORR1B1 LTR MaLR 3 119 -275 2 826 1131 108 0 0 chr1 31687255 31687412 -165508020 + Lx2 LINE L1 6320 6476 -521 2 826 239 211 0 34 chr1 31687425 31687484 -165507948 + CT-rich Low_complexity Low_complexity 2 58 0 2 826 507 17 0 0 chr1 31687485 31687545 -165507887 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 826 207 69 0 0 chr1 31687747 31687776 -165507656 + (TTTTTA)n Simple_repeat Simple_repeat 1 29 0 2 826 384 362 88 9 chr1 31688400 31688841 -165506591 - Lx8 LINE L1 -7 7466 6991 2 826 22 35 0 0 chr1 31689344 31689373 -165506059 + AT_rich Low_complexity Low_complexity 1 29 0 2 826 1414 267 59 20 chr1 31689552 31689957 -165505475 - MTC LTR MaLR 0 421 1 2 826 2123 193 100 47 chr1 31690036 31690526 -165504906 + RMER20A LTR ERVK 1 516 0 2 826 6863 126 49 34 chr1 31690714 31691730 -165503702 - L1_Mus3 LINE L1 -3 6635 5574 2 826 236 189 56 19 chr1 31691730 31691784 -165503648 - RLTR13D5 LTR ERVK -967 56 1 2 826 6863 126 49 34 chr1 31691784 31692330 -165503102 - L1_Mus3 LINE L1 -3 5573 5002 2 826 1107 62 0 7 chr1 31692330 31692475 -165502957 - B1_Mus2 SINE Alu 0 147 4 2 826 4791 160 65 91 chr1 31692475 31692754 -165502678 - L1_Mus3 LINE L1 -882 5001 4732 2 826 446 0 0 18 chr1 31692756 31692811 -165502621 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 826 21 36 0 0 chr1 31693239 31693267 -165502165 + AT_rich Low_complexity Low_complexity 1 28 0 2 826 663 48 0 0 chr1 31693328 31693411 -165502021 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 2 826 970 204 3 44 chr1 31694480 31694750 -165500682 + MTC LTR MaLR 1 413 -8 2 826 326 276 37 62 chr1 31695601 31695613 -165499819 - CYRA11_Mm Unknown Y-chromosome -323 294 262 2 826 577 154 18 0 chr1 31695613 31695723 -165499709 + URR1B DNA MER1_type 111 222 -3 2 826 326 276 37 62 chr1 31695723 31695763 -165499669 - CYRA11_Mm Unknown Y-chromosome -323 261 137 2 826 949 88 20 0 chr1 31695986 31696134 -165499298 - Lx2A LINE L1 -1 7007 6857 2 826 693 85 0 0 chr1 31698984 31699090 -165496342 + (TC)n Simple_repeat Simple_repeat 1 106 0 2 826 198 0 0 0 chr1 31699090 31699111 -165496321 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 826 1202 54 0 0 chr1 31699490 31699638 -165495794 - B1_Mus1 SINE Alu 0 148 1 2 826 804 141 0 0 chr1 31701217 31701352 -165494080 + (TCCC)n Simple_repeat Simple_repeat 4 138 0 2 826 353 348 0 58 chr1 31701356 31701527 -165493905 - RSINE1 SINE B4 -2 163 3 2 826 306 0 0 0 chr1 31703157 31703191 -165492241 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2 826 359 276 55 9 chr1 31703483 31703673 -165491759 - MLT1A1 LTR MaLR -13 395 172 2 826 810 307 79 24 chr1 31703803 31704093 -165491339 + MTEb LTR MaLR 3 308 -71 2 826 23 33 0 0 chr1 31704895 31704925 -165490507 + AT_rich Low_complexity Low_complexity 1 30 0 2 826 351 312 97 19 chr1 31705004 31705210 -165490222 - L1MC4a LINE L1 -543 7339 7118 2 826 581 267 87 73 chr1 31705222 31705389 -165490043 + B3 SINE B2 8 165 -51 2 826 465 104 0 0 chr1 31705389 31705466 -165489966 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 826 581 267 87 73 chr1 31705466 31705504 -165489928 + B3 SINE B2 166 215 -1 2 826 290 324 79 38 chr1 31705530 31705822 -165489610 - L1MC4a LINE L1 -774 7108 6805 2 826 357 230 0 0 chr1 31705858 31705958 -165489474 + CT-rich Low_complexity Low_complexity 2 101 0 2 826 344 295 0 0 chr1 31706128 31706223 -165489209 - Lx5 LINE L1 -597 6453 6359 2 826 2089 289 32 7 chr1 31706223 31706841 -165488591 + Lx5 LINE L1 6450 7041 -9 2 826 257 230 10 29 chr1 31706843 31706946 -165488486 + (TTA)n Simple_repeat Simple_repeat 3 103 0 2 826 353 313 111 45 chr1 31707113 31707403 -165488029 - L1MEc LINE L1 -3993 3044 2725 2 826 1857 171 195 101 chr1 31707403 31707724 -165487708 + RMER6C LTR ERVK 1 376 -314 2 826 994 78 0 43 chr1 31707724 31707912 -165487520 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 826 1857 171 195 101 chr1 31707912 31708221 -165487211 + RMER6C LTR ERVK 377 690 0 2 826 353 338 109 49 chr1 31708221 31708394 -165487038 - L1MEc LINE L1 -4298 2724 2551 2 826 248 70 23 0 chr1 31708493 31708536 -165486896 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 2 826 216 111 0 0 chr1 31708797 31708833 -165486599 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 826 387 0 0 0 chr1 31708957 31709000 -165486432 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 826 4034 127 16 7 chr1 31709000 31709616 -165485816 - Lx3A LINE L1 -13 6968 6347 3 826 978 41 0 0 chr1 31709616 31709739 -165485693 + (CTTTG)n Simple_repeat Simple_repeat 2 124 0 3 826 853 86 0 0 chr1 31709739 31709856 -165485576 - B1_Mm SINE Alu -9 138 22 3 826 4794 106 12 15 chr1 31709856 31710581 -165484851 - Lx3A LINE L1 -635 6346 5624 3 826 249 306 76 45 chr1 31710929 31711193 -165484239 - L1MEc LINE L1 -5009 1414 1143 2 826 389 245 135 0 chr1 31713179 31713371 -165482061 + L1MCa LINE L1 1248 1465 -5043 3 826 479 260 0 0 chr1 31713477 31713581 -165481851 - U6 snRNA snRNA -1 106 3 3 826 407 252 129 64 chr1 31713929 31714162 -165481270 + L1MCa LINE L1 2106 2353 -4155 3 826 906 262 34 4 chr1 31714275 31714543 -165480889 - Lx7 LINE L1 -1584 6112 5837 3 826 21 57 0 0 chr1 31714569 31714604 -165480828 + AT_rich Low_complexity Low_complexity 1 35 0 3 826 300 27 0 0 chr1 31714605 31714642 -165480790 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 3 826 405 0 0 0 chr1 31714808 31714853 -165480579 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 826 1366 62 6 0 chr1 31714978 31715154 -165480278 - MTB LTR MaLR -5 395 219 3 826 2393 66 41 26 chr1 31715161 31715502 -165479930 - ORR1A1 LTR MaLR 0 346 1 3 826 32 57 0 0 chr1 31715662 31715715 -165479717 + AT_rich Low_complexity Low_complexity 1 53 0 3 826 259 310 103 0 chr1 31715715 31715899 -165479533 + L1MCa LINE L1 2464 2666 -3655 3 826 259 322 83 21 chr1 31715910 31716199 -165479233 + L1MCa LINE L1 3049 3355 -2966 3 826 674 238 35 35 chr1 31716253 31716480 -165478952 - Lx7 LINE L1 -16 7680 7454 3 826 623 238 7 13 chr1 31716672 31716821 -165478611 + B1_Mur3 SINE Alu 1 148 -1 3 826 786 299 98 15 chr1 31716950 31717409 -165478023 + L1MCa LINE L1 3610 4106 -2215 3 826 2529 45 83 6 chr1 31717552 31717891 -165477541 - L1Md_F2 LINE L1 -1 6581 6217 3 826 2312 90 3 18 chr1 31717891 31718230 -165477202 + L1_Mm LINE L1 5071 5404 -479 3 826 1006 316 139 43 chr1 31718248 31719277 -165476155 + L1MCa LINE L1 4298 5425 -896 3 103 673 266 78 35 chr1 31719413 31719697 -165475735 + MER57D LTR ERV1 115 410 -1 3 827 263 214 56 56 chr1 31719737 31719826 -165475606 + L1MC1 LINE L1 6236 6324 -9 3 827 315 0 0 0 chr1 31720036 31720071 -165475361 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 827 613 351 14 25 chr1 31720322 31720608 -165474824 + MLT1B LTR MaLR 80 362 -28 3 827 290 59 0 56 chr1 31721367 31721421 -165474011 + (T)n Simple_repeat Simple_repeat 1 51 0 3 827 26 30 0 0 chr1 31721668 31721701 -165473731 + AT_rich Low_complexity Low_complexity 1 33 0 3 827 619 331 58 25 chr1 31721745 31722021 -165473411 - B4 SINE B4 0 292 8 3 827 26 0 0 0 chr1 31722030 31722056 -165473376 + AT_rich Low_complexity Low_complexity 1 26 0 3 827 351 44 0 0 chr1 31722563 31722608 -165472824 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 827 230 250 0 0 chr1 31722812 31722856 -165472576 + L1VL4 LINE L1 5 48 -6254 3 827 4459 122 1 3 chr1 31722850 31723525 -165471907 + L1VL4 LINE L1 210 883 -5419 3 827 319 253 84 172 chr1 31723598 31723860 -165471572 + MLT1D LTR MaLR 266 504 -1 3 827 417 289 57 19 chr1 31724053 31724159 -165471273 - PB1D10 SINE Alu -7 110 1 3 827 255 167 21 0 chr1 31724168 31724216 -165471216 - MTE2b LTR MaLR -2 377 329 3 827 270 252 0 0 chr1 31725052 31725151 -165470281 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 827 194 0 39 0 chr1 31726024 31726050 -165469382 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 827 239 239 25 112 chr1 31726131 31726211 -165469221 - MLT1F2 LTR MaLR -322 226 154 3 827 478 212 12 0 chr1 31726383 31726548 -165468884 + (CA)n Simple_repeat Simple_repeat 1 167 0 3 827 489 360 11 0 chr1 31726548 31726726 -165468706 - MLT1F2 LTR MaLR -377 183 4 3 827 785 299 26 26 chr1 31727215 31727448 -165467984 + B4A SINE B4 11 243 -49 3 827 601 76 11 11 chr1 31727455 31727548 -165467884 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 827 632 158 0 8 chr1 31727812 31727946 -165467486 + CT-rich Low_complexity Low_complexity 3 135 0 3 827 876 124 0 0 chr1 31727968 31728146 -165467286 + (TC)n Simple_repeat Simple_repeat 1 178 0 3 827 289 275 24 130 chr1 31728314 31728550 -165466882 + Lx8 LINE L1 5335 5567 -589 3 827 248 319 61 6 chr1 31728549 31728713 -165466719 + Lx8 LINE L1 5724 5896 -1577 3 827 390 338 42 28 chr1 31729376 31729519 -165465913 - B4 SINE B4 -54 238 94 3 827 624 346 50 56 chr1 31729571 31730052 -165465380 - Lx9 LINE L1 -219 7425 6948 3 827 209 57 29 0 chr1 31730088 31730123 -165465309 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 3 827 19769 131 9 6 chr1 31730193 31733489 -165461943 + L1_Mm LINE L1 1647 4954 -929 3 827 24278 118 20 11 chr1 31733485 31735468 -165459964 - L1Md_F LINE L1 -204 5679 3695 3 827 2179 141 9 38 chr1 31735468 31735889 -165459543 + RLTR9E LTR ERVK 1 409 0 3 827 24278 118 20 11 chr1 31735889 31737774 -165457658 - L1Md_F LINE L1 -2189 3694 1778 3 827 5204 158 34 15 chr1 31737769 31739123 -165456309 - L1Md_F LINE L1 -4367 1516 119 3 827 772 114 8 8 chr1 31739207 31739339 -165456093 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 3 827 1133 82 0 0 chr1 31739339 31739486 -165455946 - B1_Mus1 SINE Alu 0 148 2 3 827 1923 284 81 25 chr1 31739487 31740723 -165454709 - L1_Rod LINE L1 -3635 2212 900 3 827 341 255 50 0 chr1 31742474 31742615 -165452817 + Lx9 LINE L1 7488 7635 -9 3 827 296 260 28 19 chr1 31742667 31742773 -165452659 + (CATA)n Simple_repeat Simple_repeat 1 107 0 3 827 23 0 0 0 chr1 31743756 31743779 -165451653 + AT_rich Low_complexity Low_complexity 1 23 0 3 827 24 0 0 0 chr1 31744079 31744103 -165451329 + AT_rich Low_complexity Low_complexity 1 24 0 3 827 207 0 0 0 chr1 31744290 31744313 -165451119 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 827 1722 59 5 0 chr1 31744610 31744831 -165450601 - L1_Mus1 LINE L1 0 6567 6346 3 827 4901 21 3 3 chr1 31745803 31746376 -165449056 + L1Md_F3 LINE L1 6000 6572 -12 3 827 5265 112 12 32 chr1 31746397 31747246 -165448186 - Lx3C LINE L1 -116 6860 6029 3 827 911 129 29 40 chr1 31747240 31747423 -165448009 + Lx3B LINE L1 5852 6027 -627 3 827 345 47 0 0 chr1 31747519 31747562 -165447870 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 827 936 262 58 3 chr1 31748215 31748460 -165446972 - Lx6 LINE L1 -692 6768 6512 3 827 189 74 0 0 chr1 31748460 31748487 -165446945 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 827 936 262 58 3 chr1 31748487 31748536 -165446896 - Lx6 LINE L1 -949 6511 6459 3 827 829 319 44 21 chr1 31749091 31749430 -165446002 - MLT-int LTR MaLR -20 1715 1369 3 827 14615 92 19 2 chr1 31749480 31751676 -165443756 - L1VL4 LINE L1 0 3559 1328 3 827 37920 30 0 1 chr1 31751663 31758332 -165437100 - L1Md_T LINE L1 0 6585 1 3 827 4657 98 51 20 chr1 31758329 31759458 -165435974 - L1VL4 LINE L1 -2199 1360 189 3 827 200 35 35 0 chr1 31759637 31759666 -165435766 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 827 216 0 0 0 chr1 31759865 31759889 -165435543 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 827 905 102 78 0 chr1 31759889 31760017 -165435415 - B1_Mus1 SINE Alu -9 139 2 3 827 505 329 60 92 chr1 31760057 31760467 -165434965 - MTE2a LTR MaLR -12 407 3 3 827 441 328 52 81 chr1 31761844 31762101 -165433331 - MTE2b LTR MaLR -3 376 133 3 827 396 0 0 0 chr1 31762101 31762145 -165433287 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 827 441 328 52 81 chr1 31762145 31762272 -165433160 - MTE2b LTR MaLR -247 132 3 3 827 1079 80 0 0 chr1 31762831 31762969 -165432463 + B1_Mm SINE Alu 1 138 -9 3 827 242 29 0 28 chr1 31762969 31763005 -165432427 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 827 24 32 0 0 chr1 31763839 31763870 -165431562 + AT_rich Low_complexity Low_complexity 1 31 0 3 827 2753 180 16 112 chr1 31763979 31764687 -165430745 + RMER6C LTR ERVK 1 640 -50 3 827 569 305 39 39 chr1 31765191 31765396 -165430036 - B4A SINE B4 -85 207 3 3 827 202 382 20 10 chr1 31766373 31766505 -165428927 + MIRb SINE MIR 56 183 -25 3 827 238 254 69 14 chr1 31766543 31766615 -165428817 + Lx7 LINE L1 5829 5904 -1792 3 827 206 241 19 0 chr1 31767876 31767930 -165427502 + (CTTG)n Simple_repeat Simple_repeat 2 56 0 3 827 266 322 54 76 chr1 31767973 31768158 -165427274 - B3A SINE B2 -17 181 1 3 827 22 35 0 0 chr1 31768320 31768349 -165427083 + AT_rich Low_complexity Low_complexity 1 29 0 3 827 7515 70 10 1 chr1 31768370 31769418 -165426014 - L1_Mus1 LINE L1 -1 6566 5510 3 827 396 0 0 0 chr1 31769582 31769626 -165425806 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 827 824 258 71 116 chr1 31769789 31770228 -165425204 - RLTR12B LTR ERVK -63 465 47 3 827 21 0 0 0 chr1 31770739 31770760 -165424672 + AT_rich Low_complexity Low_complexity 1 21 0 3 827 24 0 0 0 chr1 31771196 31771220 -165424212 + AT_rich Low_complexity Low_complexity 1 24 0 3 827 2468 129 40 25 chr1 31772121 31772565 -165422867 - Lx2 LINE L1 0 6997 6547 3 827 285 57 0 0 chr1 31773955 31773990 -165421442 - U2 snRNA snRNA -153 35 1 3 827 453 253 11 166 chr1 31774126 31774301 -165421131 + B1_Mur1 SINE Alu 2 149 0 3 827 1080 286 67 32 chr1 31775041 31775442 -165419990 + Lx7 LINE L1 6759 7173 -523 3 827 2265 208 32 8 chr1 31775453 31775947 -165419485 - RLTR11A2 LTR ERVK -21 506 1 3 827 225 289 79 0 chr1 31775947 31776023 -165419409 + Lx7 LINE L1 7168 7249 -447 3 827 384 22 0 0 chr1 31776715 31776760 -165418672 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 827 6259 127 28 22 chr1 31777535 31778814 -165416618 - Lx LINE L1 -126 6528 5237 3 827 211 231 19 19 chr1 31778894 31778947 -165416485 + GA-rich Low_complexity Low_complexity 2 54 0 3 827 292 238 17 67 chr1 31779162 31779342 -165416090 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 3 827 23 33 0 0 chr1 31779351 31779381 -165416051 + AT_rich Low_complexity Low_complexity 1 30 0 3 827 211 67 21 43 chr1 31779387 31779434 -165415998 + (TAAAA)n Simple_repeat Simple_repeat 5 50 0 3 827 489 297 177 54 chr1 31779440 31779757 -165415675 - MLT2B4 LTR ERVL -198 358 3 3 827 438 20 0 0 chr1 31780251 31780302 -165415130 + (ACTG)n Simple_repeat Simple_repeat 4 54 0 3 827 219 69 0 0 chr1 31780303 31780332 -165415100 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 827 263 267 0 0 chr1 31781621 31781711 -165413721 + L1_Rod LINE L1 5731 5820 -27 3 827 291 28 0 0 chr1 31781755 31781791 -165413641 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 3 827 208 200 22 0 chr1 31781793 31781838 -165413594 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 827 700 139 8 31 chr1 31781955 31782107 -165413325 - L1_Mur1 LINE L1 -2845 3301 3127 4 827 1853 251 117 135 chr1 31782113 31782647 -165412785 + Lx2 LINE L1 5874 6425 -572 4 827 340 203 0 0 chr1 31782647 31782706 -165412726 - RMER19B LTR ERVK -804 98 40 4 827 1853 251 117 135 chr1 31782706 31783238 -165412194 + Lx2 LINE L1 6426 6978 -19 4 827 2300 76 31 6 chr1 31783265 31783582 -165411850 - IAPLTR2b LTR ERVK -2 325 1 4 827 3566 168 137 71 chr1 31783614 31784447 -165410985 + RMER19B LTR ERVK 1 888 -14 4 827 4028 202 45 11 chr1 31784460 31785583 -165409849 + Lx5 LINE L1 5367 6546 -504 4 827 456 255 7 7 chr1 31785583 31785729 -165409703 + Lx5 LINE L1 6902 7047 -3 4 827 366 158 99 56 chr1 31785744 31785905 -165409527 - Lx9 LINE L1 -1 7643 7476 4 827 22 35 0 0 chr1 31785919 31785948 -165409484 + AT_rich Low_complexity Low_complexity 1 29 0 4 827 204 154 64 0 chr1 31785954 31786032 -165409400 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 4 827 318 176 57 29 chr1 31786032 31786262 -165409170 + (TA)n Simple_repeat Simple_repeat 1 236 0 4 827 345 175 41 53 chr1 31786166 31786335 -165409097 + (TATAA)n Simple_repeat Simple_repeat 5 171 0 4 827 721 203 60 45 chr1 31786356 31786624 -165408808 - Lx9 LINE L1 -126 7518 7247 4 827 3303 36 3 0 chr1 31787386 31787770 -165407662 - IAPEY_LTR LTR ERVK 0 385 1 4 827 20574 48 7 4 chr1 31787770 31790474 -165404958 - IAPEy-int LTR ERVK 0 7513 4804 4 827 2627 132 11 21 chr1 31790474 31791140 -165404292 - IAPEy-int LTR ERVK -6455 1058 12 4 827 3248 37 3 0 chr1 31791145 31791525 -165403907 - IAPEY_LTR LTR ERVK -4 381 1 4 827 234 248 64 45 chr1 31791922 31792032 -165403400 + RMER16 LTR ERVK 394 505 -28 4 827 1533 234 48 46 chr1 31792041 31792543 -165402889 - Lx7 LINE L1 -16 7680 7178 4 827 478 133 11 11 chr1 31792748 31792839 -165402593 + GA-rich Low_complexity Low_complexity 2 92 0 4 827 216 0 0 0 chr1 31793220 31793244 -165402188 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 827 289 288 15 0 chr1 31795278 31795352 -165400080 + ID4_ SINE ID 5 79 -73 4 827 26 74 0 0 chr1 31796013 31796067 -165399365 + AT_rich Low_complexity Low_complexity 1 54 0 4 827 2410 223 24 62 chr1 31796144 31796726 -165398706 + RLTR20B2 LTR ERVK 1 560 0 4 827 1522 302 87 5 chr1 31796727 31797349 -165398083 - RCHARR1 DNA MER1_type -257 717 45 4 827 4370 97 7 2 chr1 31797364 31797983 -165397449 + L1_Mus2 LINE L1 5945 6566 0 4 827 21 0 0 0 chr1 31798067 31798088 -165397344 + AT_rich Low_complexity Low_complexity 1 21 0 4 827 3018 130 27 29 chr1 31798088 31798627 -165396805 - L1_Mm LINE L1 -2213 3670 3144 4 827 252 0 0 0 chr1 31798627 31798655 -165396777 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 827 3018 130 27 29 chr1 31798655 31798676 -165396756 - L1_Mm LINE L1 -2740 3143 3112 4 827 440 153 35 129 chr1 31798676 31798811 -165396621 + L1_Mus3 LINE L1 6524 6638 0 4 827 873 0 0 0 chr1 31799123 31799220 -165396212 + (GAA)n Simple_repeat Simple_repeat 3 99 0 4 827 682 270 39 5 chr1 31799814 31800019 -165395413 + B3 SINE B2 5 216 0 4 827 1657 164 6 117 chr1 31802257 31802616 -165392816 + ORR1A4 LTR MaLR 3 321 -8 4 827 235 268 26 66 chr1 31803271 31803347 -165392085 + ID_B1 SINE B4 113 185 -39 4 827 444 143 0 0 chr1 31803364 31803448 -165391984 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 827 762 270 98 38 chr1 31803671 31803906 -165391526 + MTD LTR MaLR 3 251 -168 4 827 1471 245 106 76 chr1 31803918 31804484 -165390948 + RMER19C LTR ERVK 24 606 -5 4 827 400 244 117 8 chr1 31804480 31804608 -165390824 + MTD LTR MaLR 223 364 -55 4 827 3940 152 55 4 chr1 31804608 31805293 -165390139 - RMER6D LTR ERVK 0 720 1 4 827 303 367 108 65 chr1 31805339 31805531 -165389901 - LTR80B LTR ERVL -5 579 389 4 827 4317 136 86 9 chr1 31805531 31805734 -165389698 - Lx3C LINE L1 0 6976 6724 4 827 3512 45 28 0 chr1 31805734 31806158 -165389274 + RLTR10C LTR ERVK 1 436 0 4 827 4317 136 86 9 chr1 31806158 31806696 -165388736 - Lx3C LINE L1 -253 6723 6178 4 827 303 367 108 65 chr1 31806696 31806996 -165388436 - LTR80B LTR ERVL -196 388 66 4 827 1917 291 24 54 chr1 31807016 31808128 -165387304 - Lx5 LINE L1 -8 7042 6005 4 827 1424 188 26 0 chr1 31809430 31809701 -165385731 - RLTR11A LTR ERVK 0 528 251 4 827 2773 198 37 82 chr1 31809713 31810383 -165385049 + RLTR26 LTR ERVK 3 642 0 4 827 1190 176 0 22 chr1 31810390 31810616 -165384816 - RLTR11A LTR ERVK -307 221 1 4 827 204 40 0 0 chr1 31811526 31811551 -165383881 + (T)n Simple_repeat Simple_repeat 1 25 0 4 827 1646 270 20 0 chr1 31811593 31811986 -165383446 + MTD LTR MaLR 6 406 -13 4 827 313 274 0 140 chr1 31812001 31812137 -165383295 + MTD-int LTR MaLR 132 248 -1010 4 827 677 282 120 92 chr1 31812183 31812609 -165382823 + MTD-int LTR MaLR 821 1258 0 4 827 470 240 38 88 chr1 31812613 31812773 -165382659 + MTD LTR MaLR 5 156 -263 4 827 676 246 37 93 chr1 31812883 31813154 -165382278 + MTD LTR MaLR 170 402 -17 4 827 3205 245 25 9 chr1 31814691 31815483 -165379949 + Lx5 LINE L1 6149 6953 -97 4 827 195 114 0 0 chr1 31815518 31815553 -165379879 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 827 180 111 0 0 chr1 31815551 31815578 -165379854 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 4 827 36 0 0 0 chr1 31815672 31815708 -165379724 + AT_rich Low_complexity Low_complexity 1 36 0 4 827 28 0 0 0 chr1 31817122 31817150 -165378282 + AT_rich Low_complexity Low_complexity 1 28 0 4 827 269 237 42 8 chr1 31817380 31817499 -165377933 + (TA)n Simple_repeat Simple_repeat 2 124 0 4 827 1108 41 0 110 chr1 31817671 31817835 -165377597 - B1_Mm SINE Alu -1 146 1 4 827 329 45 0 0 chr1 31817878 31817926 -165377506 + B1_Mm SINE Alu 93 140 -9 4 827 2984 132 20 0 chr1 31818378 31818831 -165376601 - Lx3_Mus LINE L1 0 7009 6548 4 827 2454 93 3 16 chr1 31818831 31819201 -165376231 - Lx3_Mus LINE L1 -1057 5952 5588 4 827 1120 337 86 9 chr1 31819247 31819888 -165375544 - Lx8 LINE L1 -192 7281 6592 4 827 1382 264 91 19 chr1 31819892 31820576 -165374856 - L1_Mur3 LINE L1 -2133 3747 3015 4 827 513 296 65 24 chr1 31820576 31820915 -165374517 - L1_Mur3 LINE L1 -3248 2632 2280 4 827 439 294 70 21 chr1 31820928 31821255 -165374177 - L1_Mur3 LINE L1 -4074 1806 1464 4 827 4681 138 44 33 chr1 31821408 31822294 -165373138 - RMER17A2 LTR ERVK -10 896 1 4 827 762 166 0 0 chr1 31822532 31822683 -165372749 + (TG)n Simple_repeat Simple_repeat 2 152 0 4 827 436 214 23 6 chr1 31822740 31822914 -165372518 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 827 462 193 22 11 chr1 31822970 31823148 -165372284 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 827 295 264 7 7 chr1 31823215 31823356 -165372076 + (TATG)n Simple_repeat Simple_repeat 4 144 0 4 827 246 314 75 13 chr1 31824016 31824081 -165371351 - L1MC4 LINE L1 -467 7575 7500 4 827 195 100 0 0 chr1 31824081 31824111 -165371321 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 827 246 314 75 13 chr1 31824111 31824271 -165371161 - L1MC4 LINE L1 -543 7499 7337 4 827 409 267 60 0 chr1 31825062 31825178 -165370254 - MTEb LTR MaLR -2 377 255 4 827 442 373 84 47 chr1 31826483 31826578 -165368854 - MLT1D LTR MaLR -22 483 386 4 827 183 80 0 0 chr1 31826578 31826603 -165368829 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 827 442 373 84 47 chr1 31826603 31826971 -165368461 - MLT1D LTR MaLR -120 385 3 4 827 191 391 14 0 chr1 31827279 31827348 -165368084 + L2a LINE L2 2960 3029 -397 4 827 234 0 0 0 chr1 31827652 31827678 -165367754 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 827 24 32 0 0 chr1 31827867 31827898 -165367534 + AT_rich Low_complexity Low_complexity 1 31 0 4 827 3313 50 0 0 chr1 31827930 31828326 -165367106 - MTA_Mm LTR MaLR 0 396 1 4 827 7876 85 9 3 chr1 31828326 31829417 -165366015 - MTA_Mm-int LTR MaLR 0 1098 1 4 827 3407 40 0 0 chr1 31829417 31829813 -165365619 - MTA_Mm LTR MaLR 0 396 1 4 827 399 308 142 22 chr1 31829964 31830190 -165365242 - ORR1E LTR MaLR -106 253 1 4 827 1469 328 76 72 chr1 31830190 31830939 -165364493 - ORR1E-int LTR MaLR -53 1527 776 4 827 9144 94 6 0 chr1 31830973 31833071 -165362361 - L1_Mus1 LINE L1 0 6567 4458 4 827 1112 186 148 4 chr1 31833218 31833461 -165361971 + Lx2B LINE L1 6720 6997 -3 4 827 315 190 0 12 chr1 31834318 31834403 -165361029 - Lx2 LINE L1 -14 6983 6900 4 827 650 60 9 74 chr1 31834403 31834511 -165360921 - Lx LINE L1 -258 6396 6296 4 827 1308 201 72 124 chr1 31834895 31835339 -165360093 - RLTR23 LTR ERV1 0 430 10 4 827 1052 291 33 26 chr1 31835382 31835752 -165359680 - MTE2b LTR MaLR -14 365 18 4 827 3250 80 2 9 chr1 31836393 31836834 -165358598 + L1_Mus2 LINE L1 6129 6566 0 4 827 29 70 0 0 chr1 31837271 31837328 -165358104 + AT_rich Low_complexity Low_complexity 1 57 0 4 827 201 94 0 0 chr1 31837996 31838028 -165357404 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 827 1055 100 0 0 chr1 31838030 31838170 -165357262 - B1_Mus1 SINE Alu -8 140 1 4 827 310 345 79 0 chr1 31838495 31838634 -165356798 + RSINE1 SINE B4 12 161 -4 4 827 360 0 0 0 chr1 31838634 31838674 -165356758 + (TAA)n Simple_repeat Simple_repeat 2 41 0 4 827 243 297 54 21 chr1 31838782 31838875 -165356557 + MLT2B1 LTR ERVL 2 97 -418 4 827 427 248 36 65 chr1 31839018 31839186 -165356246 + RLTR43A LTR ERVK 202 364 0 4 827 22 0 0 0 chr1 31839459 31839481 -165355951 + AT_rich Low_complexity Low_complexity 1 22 0 4 827 2342 171 106 19 chr1 31839742 31840262 -165355170 + ETnERV2-int LTR ERVK 255 819 -4587 4 827 5062 163 37 58 chr1 31840272 31841308 -165354124 + ETnERV2-int LTR ERVK 1733 2746 -4660 4 827 546 167 0 0 chr1 31841309 31841405 -165354027 + ETnERV2-int LTR ERVK 3299 3394 -4012 4 827 466 323 77 21 chr1 31841551 31841796 -165353636 + MLT2B1 LTR ERVL 322 534 -21 4 827 213 94 0 0 chr1 31843022 31843054 -165352378 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 827 604 331 45 56 chr1 31844042 31844330 -165351102 + B4A SINE B4 5 289 -3 4 827 314 340 146 9 chr1 31844565 31844984 -165350448 - L1MD3 LINE L1 -10 7985 7405 4 827 7270 79 16 13 chr1 31845335 31845361 -165350071 - L1Md_F2 LINE L1 -1 6581 6560 4 827 369 0 0 0 chr1 31845361 31845402 -165350030 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 827 7858 83 11 10 chr1 31845402 31847153 -165348279 - L1Md_F2 LINE L1 -23 6559 4799 4 827 12809 89 6 1 chr1 31847149 31848952 -165346480 + L1Md_F2 LINE L1 2976 4787 -1096 4 827 964 42 0 0 chr1 31849152 31849272 -165346160 - B1_Mus1 SINE Alu -2 146 27 4 827 6785 5 0 0 chr1 31849272 31850042 -165345390 + L1_Mm LINE L1 4034 4803 -1080 4 827 314 71 0 0 chr1 31850042 31850084 -165345348 - B1_Mus2 SINE Alu -105 42 1 4 828 270 193 0 0 chr1 31850524 31850581 -165344851 + (TATG)n Simple_repeat Simple_repeat 1 57 0 4 828 1106 88 7 0 chr1 31850716 31850863 -165344569 - B1_Mus1 SINE Alu 0 148 1 4 828 231 353 59 0 chr1 31851105 31851207 -165344225 + MIR SINE MIR 32 139 -123 4 828 12575 63 0 1 chr1 31851312 31852922 -165342510 + L1Md_F2 LINE L1 3978 5586 -297 4 828 8069 49 1 0 chr1 31852922 31853905 -165341527 + L1Md_F2 LINE L1 5587 6570 -12 4 828 27 81 0 0 chr1 31854139 31854201 -165341231 + AT_rich Low_complexity Low_complexity 1 62 0 4 828 217 304 50 12 chr1 31854508 31854588 -165340844 + ID SINE ID 2 84 -140 4 828 185 273 152 0 chr1 31854788 31854854 -165340578 + L3b LINE CR1 341 416 -66 4 828 284 19 56 19 chr1 31855413 31855467 -165339965 + (CAAAAA)n Simple_repeat Simple_repeat 3 58 0 4 828 21 0 0 0 chr1 31855760 31855781 -165339651 + AT_rich Low_complexity Low_complexity 1 21 0 4 828 646 281 72 43 chr1 31855934 31856213 -165339219 + Lx8 LINE L1 6793 7079 -394 5 828 4559 72 3 25 chr1 31856519 31857156 -165338276 - L1Md_F2 LINE L1 -12 6570 5948 5 828 3332 87 5 0 chr1 31857884 31858332 -165337100 - L1_Mus1 LINE L1 0 6567 6118 5 828 1142 241 214 31 chr1 31858704 31859180 -165336252 + RMER2 LTR ERV1 1 563 -4 5 828 1173 54 0 13 chr1 31859983 31860132 -165335300 + B1_Mm SINE Alu 1 147 0 5 828 225 59 78 0 chr1 31860365 31860416 -165335016 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 5 828 25 31 0 0 chr1 31860725 31860757 -165334675 + AT_rich Low_complexity Low_complexity 1 32 0 5 828 368 252 16 108 chr1 31861596 31861725 -165333707 + MER63B DNA AcHobo 313 429 -7 5 828 409 344 32 11 chr1 31862079 31862264 -165333168 + B4A SINE B4 45 233 -59 5 828 218 267 0 16 chr1 31862351 31862412 -165333020 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 828 396 59 0 0 chr1 31862441 31862492 -165332940 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 828 27 49 0 0 chr1 31862723 31862764 -165332668 + AT_rich Low_complexity Low_complexity 1 41 0 5 828 1388 246 135 17 chr1 31862768 31863115 -165332317 - Lx5 LINE L1 -8 7042 6655 5 828 1942 210 34 12 chr1 31863127 31863536 -165331896 + Lx5 LINE L1 6204 6621 -429 5 828 474 18 0 0 chr1 31864047 31864102 -165331330 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 828 209 247 0 12 chr1 31864658 31864740 -165330692 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 828 216 67 0 0 chr1 31864825 31864855 -165330577 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 828 513 237 40 58 chr1 31865182 31865364 -165330068 + MTEa LTR MaLR 227 421 0 5 828 1069 290 90 56 chr1 31865831 31866477 -165328955 + Lx9 LINE L1 6934 7601 -43 5 828 27 62 0 0 chr1 31866486 31866534 -165328898 + AT_rich Low_complexity Low_complexity 1 48 0 5 828 205 29 29 29 chr1 31867444 31867479 -165327953 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 828 232 271 210 6 chr1 31867496 31867663 -165327769 - Lx7 LINE L1 -29 7667 7467 5 828 21 0 0 0 chr1 31868133 31868154 -165327278 + AT_rich Low_complexity Low_complexity 1 21 0 5 828 957 171 26 44 chr1 31868940 31869166 -165326266 - Lx3B LINE L1 -3 6970 6749 5 828 434 313 151 0 chr1 31869708 31869887 -165325545 - Charlie1a DNA MER1_type -249 1206 1001 5 828 439 297 147 5 chr1 31869968 31870279 -165325153 + L1_Mur3 LINE L1 5074 5482 -818 5 828 369 0 0 0 chr1 31870279 31870320 -165325112 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 828 278 295 0 18 chr1 31870320 31870340 -165325092 + L1_Mur3 LINE L1 5483 5500 -800 5 828 572 320 67 27 chr1 31870331 31870580 -165324852 + Lx7 LINE L1 6491 6744 -729 5 828 408 40 0 0 chr1 31870580 31870630 -165324802 + (CTA)n Simple_repeat Simple_repeat 1 50 0 5 828 572 313 67 30 chr1 31870630 31870696 -165324736 + Lx7 LINE L1 6734 6811 -885 5 828 21 0 0 0 chr1 31870973 31870994 -165324438 + AT_rich Low_complexity Low_complexity 1 21 0 5 828 40575 12 1 6 chr1 31871094 31877289 -165318143 - L1Md_A LINE L1 -1 6581 421 5 828 397 327 71 85 chr1 31878625 31878979 -165316453 + RMER15 LTR ERVL 99 447 -128 5 828 273 272 118 63 chr1 31879035 31879225 -165316207 - MTEa LTR MaLR -3 376 175 5 828 227 320 137 81 chr1 31879220 31879417 -165316015 - MTE-int LTR MaLR -625 955 748 5 828 674 182 0 13 chr1 31879811 31879961 -165315471 + CT-rich Low_complexity Low_complexity 2 149 0 5 828 4221 78 31 36 chr1 31879964 31879992 -165315440 - L1_Mus2 LINE L1 -2 6564 6535 5 828 5610 71 8 11 chr1 31879992 31880749 -165314683 - L1_Mus1 LINE L1 0 6567 5813 5 828 4221 85 30 36 chr1 31880749 31881353 -165314079 - L1_Mus2 LINE L1 -32 6534 5938 5 828 1972 139 12 24 chr1 31881677 31882008 -165313424 + ORR1A2 LTR MaLR 1 327 0 5 828 10265 150 41 50 chr1 31882008 31883029 -165312403 + ORR1A2-int LTR MaLR 1 1031 -932 5 828 1370 73 17 0 chr1 31883029 31883206 -165312226 + B2_Mm2 SINE B2 2 181 -14 5 828 10265 150 41 50 chr1 31883206 31884166 -165311266 + ORR1A2-int LTR MaLR 1032 1963 0 5 828 1954 123 41 3 chr1 31884166 31884483 -165310949 + ORR1A2 LTR MaLR 1 329 0 5 828 911 271 37 110 chr1 31884996 31885460 -165309972 - Lx9 LINE L1 -175 7469 7040 5 828 1446 147 42 8 chr1 31885595 31885856 -165309576 - Lx3A LINE L1 -3 6978 6709 5 828 637 380 58 25 chr1 31886094 31886529 -165308903 + L3 LINE CR1 3581 4029 -460 5 828 7491 65 5 12 chr1 31886938 31888268 -165307164 - L1Md_F2 LINE L1 -2 6580 5259 5 828 39 68 0 0 chr1 31888268 31888342 -165307090 + AT_rich Low_complexity Low_complexity 1 74 0 5 828 203 154 57 34 chr1 31888346 31888521 -165306911 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 828 228 188 29 59 chr1 31888523 31888625 -165306807 + (TTATA)n Simple_repeat Simple_repeat 1 99 0 5 828 329 307 144 15 chr1 31888638 31888833 -165306599 - L1ME1 LINE L1 -232 5947 5728 5 828 335 298 156 14 chr1 31888866 31889142 -165306290 - L1ME1 LINE L1 -518 5644 5330 5 828 262 303 58 18 chr1 31889229 31889454 -165305978 - L1ME1 LINE L1 -1539 4607 4374 5 828 515 200 114 22 chr1 31889837 31890085 -165305347 - Lx9 LINE L1 -5 7639 7333 5 828 548 315 16 27 chr1 31890186 31890369 -165305063 - B4A SINE B4 -48 244 64 5 828 672 36 0 0 chr1 31890693 31890776 -165304656 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 828 183 100 0 0 chr1 31891055 31891085 -165304347 + (A)n Simple_repeat Simple_repeat 1 30 0 5 828 2146 244 106 14 chr1 31891109 31891687 -165303745 - Lx9 LINE L1 -656 6988 6358 5 828 223 140 40 0 chr1 31891737 31891787 -165303645 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 828 3011 118 45 0 chr1 31892053 31892501 -165302931 - L1_Mus2 LINE L1 -53 6513 6046 5 828 8471 91 2 13 chr1 31892495 31893898 -165301534 + L1_Mus2 LINE L1 4688 6071 -495 5 828 1062 265 3 11 chr1 31893909 31894191 -165301241 - L1_Rod LINE L1 -51 5796 5517 5 828 1111 270 52 54 chr1 31894194 31894715 -165300717 + Lx9 LINE L1 6997 7516 -128 5 828 2528 240 75 18 chr1 31894771 31895454 -165299978 - RMER19A LTR ERVK -12 725 4 5 828 378 0 0 0 chr1 31895454 31895496 -165299936 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 828 26 50 0 0 chr1 31895605 31895645 -165299787 + AT_rich Low_complexity Low_complexity 1 40 0 5 828 229 242 63 42 chr1 31895761 31895856 -165299576 + Lx8 LINE L1 7293 7389 -84 5 828 243 328 0 15 chr1 31896129 31896197 -165299235 - ID4 SINE ID 0 83 17 5 828 22 56 0 0 chr1 31896218 31896254 -165299178 + AT_rich Low_complexity Low_complexity 1 36 0 5 828 644 302 16 52 chr1 31896270 31896462 -165298970 + B3 SINE B2 32 216 0 5 828 347 302 101 41 chr1 31896583 31896752 -165298680 - MLT1A0 LTR MaLR -46 319 141 5 828 21 36 0 0 chr1 31896900 31896928 -165298504 + AT_rich Low_complexity Low_complexity 1 28 0 5 828 416 281 70 142 chr1 31896992 31897325 -165298107 - MTEa LTR MaLR 0 379 47 5 828 3152 146 17 24 chr1 31897325 31897865 -165297567 + Lx3B LINE L1 6438 6973 0 5 828 390 330 50 138 chr1 31897865 31897916 -165297516 - MTEa LTR MaLR -313 46 11 5 828 946 263 113 17 chr1 31897930 31898423 -165297009 - L1MA6 LINE L1 -300 6000 5457 5 828 206 328 31 0 chr1 31898847 31898911 -165296521 + MIR3 SINE MIR 121 186 -22 5 828 238 224 0 0 chr1 31899803 31899852 -165295580 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 5 828 186 133 0 0 chr1 31899909 31899939 -165295493 + (T)n Simple_repeat Simple_repeat 1 30 0 5 828 1801 144 19 60 chr1 31899959 31900328 -165295104 - Lx3B LINE L1 0 6973 6620 5 828 21 0 0 0 chr1 31900328 31900349 -165295083 + AT_rich Low_complexity Low_complexity 1 21 0 5 828 21 0 0 0 chr1 31900596 31900617 -165294815 + AT_rich Low_complexity Low_complexity 1 21 0 5 828 442 277 114 126 chr1 31900921 31901320 -165294112 - L1MA4A LINE L1 -373 5930 5550 5 828 444 251 99 0 chr1 31901322 31901493 -165293939 - L1MA4A LINE L1 -1173 4674 4487 5 828 2118 53 0 0 chr1 31901588 31901851 -165293581 + L1Md_T LINE L1 6320 6582 0 5 828 1150 233 95 45 chr1 31901920 31902342 -165293090 - L1MA4A LINE L1 -1415 4432 3990 5 828 236 233 108 32 chr1 31902497 31902590 -165292842 + L1M1 LINE L1 5787 5886 -414 5 828 751 281 64 34 chr1 31903085 31903444 -165291988 - Lx9 LINE L1 -1468 6005 5642 5 828 1507 293 65 42 chr1 31903467 31903904 -165291528 + Lx9 LINE L1 6764 7211 -433 5 828 267 31 0 0 chr1 31903904 31903936 -165291496 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 5 828 1507 293 65 42 chr1 31903936 31904185 -165291247 + Lx9 LINE L1 7212 7466 -178 5 828 455 323 22 8 chr1 31904429 31904563 -165290869 + RSINE1 SINE B4 9 144 -21 5 828 283 283 104 42 chr1 31904620 31904634 -165290798 + ID_B1 SINE B4 70 218 -2 5 828 501 262 40 0 chr1 31904634 31904760 -165290672 + B1_Mur1 SINE Alu 13 143 -6 5 828 1021 147 5 57 chr1 31905978 31906187 -165289245 + Lx2 LINE L1 6799 6996 -1 5 828 22 0 0 0 chr1 31906572 31906594 -165288838 + AT_rich Low_complexity Low_complexity 1 22 0 5 828 21 36 0 0 chr1 31906769 31906797 -165288635 + AT_rich Low_complexity Low_complexity 1 28 0 5 828 243 0 0 0 chr1 31906844 31906871 -165288561 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 828 192 152 0 0 chr1 31906970 31907003 -165288429 + (CATA)n Simple_repeat Simple_repeat 4 36 0 5 828 33066 101 15 12 chr1 31907047 31913400 -165282032 - L1Md_F2 LINE L1 -1 6581 208 5 828 279 0 0 0 chr1 31913788 31913819 -165281613 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5 828 740 290 55 0 chr1 31913823 31914006 -165281426 - B3 SINE B2 -6 210 18 5 828 185 86 57 0 chr1 31914391 31914426 -165281006 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 5 828 302 297 40 13 chr1 31914896 31915046 -165280386 - L1MA10 LINE L1 -7 6327 6174 5 828 464 259 83 0 chr1 31915108 31915230 -165280202 + B1F1 SINE Alu 14 144 -5 5 828 29 0 0 0 chr1 31915243 31915272 -165280160 + AT_rich Low_complexity Low_complexity 1 29 0 5 828 281 26 26 0 chr1 31915747 31915785 -165279647 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 828 230 284 31 47 chr1 31915857 31915986 -165279446 - L1MA10 LINE L1 -415 5888 5762 5 828 450 295 101 72 chr1 31915965 31916103 -165279329 - L1MA10 LINE L1 -1890 5806 5662 5 828 1110 95 77 6 chr1 31916103 31916272 -165279160 + B2_Mm2 SINE B2 1 181 -14 5 828 450 333 19 40 chr1 31916272 31916498 -165278934 - L1MA10 LINE L1 -601 5690 5473 5 828 1316 113 5 0 chr1 31916608 31916794 -165278638 - ORR1A2 LTR MaLR 0 327 141 5 828 405 208 0 0 chr1 31916799 31916873 -165278559 - Lx8 LINE L1 -1068 6405 6340 5 828 352 252 54 19 chr1 31916909 31917095 -165278337 - Lx8 LINE L1 -1501 5972 5755 5 828 198 0 0 0 chr1 31917103 31917125 -165278307 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 828 254 286 208 17 chr1 31917131 31917362 -165278070 - Lx9 LINE L1 -15 7629 7355 5 828 244 231 0 0 chr1 31917429 31917494 -165277938 - Lx8 LINE L1 -503 5377 5313 5 828 690 320 82 0 chr1 31917871 31918199 -165277233 + ORR1E LTR MaLR 1 355 -4 5 828 802 293 156 16 chr1 31918530 31918725 -165276707 + Lx9 LINE L1 7010 7219 -425 6 828 4483 49 4 0 chr1 31918725 31919273 -165276159 + L1Md_F3 LINE L1 6017 6566 -18 6 828 195 129 0 0 chr1 31919273 31919304 -165276128 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 828 802 293 156 16 chr1 31919310 31919544 -165275888 + Lx9 LINE L1 7220 7498 -146 6 828 397 370 18 43 chr1 31919713 31919877 -165275555 + RSINE1 SINE B4 4 163 -2 6 828 240 111 0 0 chr1 31919885 31919930 -165275502 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 828 4345 75 6 24 chr1 31921072 31921697 -165273735 - L1_Mus3 LINE L1 0 6638 6025 6 828 390 39 20 0 chr1 31923704 31923755 -165271677 - L1_Mus3 LINE L1 -219 6419 6368 6 828 1116 96 22 6 chr1 31923755 31923959 -165271473 + L1_Mus3 LINE L1 6445 6638 0 6 828 891 343 80 22 chr1 31924443 31924577 -165270855 - Lx7 LINE L1 -1 7472 7336 6 828 207 0 0 0 chr1 31924577 31924600 -165270832 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 828 970 322 122 47 chr1 31924600 31925665 -165269767 - Lx7 LINE L1 -138 7335 6172 6 828 22 35 0 0 chr1 31925673 31925702 -165269730 + AT_rich Low_complexity Low_complexity 1 29 0 6 828 426 183 16 8 chr1 31925727 31925848 -165269584 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 828 342 0 0 0 chr1 31925855 31925893 -165269539 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 828 1005 292 62 24 chr1 31925898 31926493 -165268939 - Lx7 LINE L1 -1539 6157 5501 6 828 369 95 0 0 chr1 31926626 31926689 -165268743 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 828 204 123 16 95 chr1 31926728 31926791 -165268641 + A-rich Low_complexity Low_complexity 1 58 0 6 828 1162 298 132 28 chr1 31926807 31927453 -165267979 - Lx7 LINE L1 -332 7364 6652 6 828 3737 293 57 20 chr1 31927412 31927936 -165267496 + Lx7 LINE L1 6126 6636 -1060 6 828 417 39 0 0 chr1 31927936 31927987 -165267445 + (TTA)n Simple_repeat Simple_repeat 3 53 0 6 828 3737 293 57 20 chr1 31927987 31928621 -165266811 + Lx7 LINE L1 6637 7311 -385 6 828 261 83 0 0 chr1 31928621 31928657 -165266775 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 6 828 3737 293 57 20 chr1 31928657 31928736 -165266696 + Lx7 LINE L1 7312 7409 -287 6 828 983 249 30 15 chr1 31929908 31930177 -165265255 - Lx2B LINE L1 0 7000 6728 6 828 646 291 21 16 chr1 31930415 31930607 -165264825 + Lx7 LINE L1 6541 6733 -963 6 828 21 36 0 0 chr1 31930694 31930722 -165264710 + AT_rich Low_complexity Low_complexity 1 28 0 6 828 871 329 63 13 chr1 31930799 31931812 -165263620 - L1MA6 LINE L1 -126 6174 5110 6 828 427 281 69 40 chr1 31931788 31931962 -165263470 - Lx8 LINE L1 -1021 6452 6274 6 828 32 0 0 0 chr1 31932034 31932066 -165263366 + AT_rich Low_complexity Low_complexity 1 32 0 6 828 545 310 100 0 chr1 31932088 31932388 -165263044 - L1MA6 LINE L1 -1172 4971 4642 6 828 243 114 0 0 chr1 31932885 31932929 -165262503 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 828 1057 286 112 21 chr1 31933149 31933488 -165261944 + ORR1D1 LTR MaLR 5 374 0 6 828 267 213 13 0 chr1 31934715 31934790 -165260642 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 6 828 221 83 28 0 chr1 31934979 31935015 -165260417 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 6 828 261 0 0 0 chr1 31935018 31935047 -165260385 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 6 828 372 111 0 0 chr1 31935057 31935120 -165260312 + (CAAAG)n Simple_repeat Simple_repeat 2 64 0 6 828 333 0 0 0 chr1 31935382 31935419 -165260013 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6 828 762 169 23 11 chr1 31935457 31935631 -165259801 + GA-rich Low_complexity Low_complexity 5 180 0 6 828 1150 7 20 14 chr1 31935693 31935839 -165259593 + (GGAAA)n Simple_repeat Simple_repeat 3 149 0 6 828 294 29 0 0 chr1 31937029 31937064 -165258368 + (TATG)n Simple_repeat Simple_repeat 2 36 0 6 828 227 312 10 1 chr1 31937170 31937290 -165258142 - L1M2 LINE L1 -544 5756 5637 6 828 28 48 0 0 chr1 31937305 31937347 -165258085 + AT_rich Low_complexity Low_complexity 1 42 0 6 828 351 0 0 0 chr1 31937476 31937515 -165257917 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 828 431 291 35 39 chr1 31937641 31937895 -165257537 + L1M3 LINE L1 5366 5618 -571 6 828 416 200 0 10 chr1 31937898 31937994 -165257438 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 828 216 158 0 0 chr1 31937993 31938031 -165257401 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 6 828 355 295 19 28 chr1 31938142 31938250 -165257182 - PB1D10 SINE Alu 0 117 11 6 828 3746 150 31 19 chr1 31939200 31939868 -165255564 + Lx2B LINE L1 6325 7000 0 6 828 907 154 60 44 chr1 31940199 31940382 -165255050 + B2_Mm2 SINE B2 2 187 -8 6 828 242 274 26 112 chr1 31940385 31940473 -165254959 + L1_Rod LINE L1 2501 2581 -3266 6 828 432 0 0 0 chr1 31940473 31940521 -165254911 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 6 828 242 274 26 112 chr1 31940521 31940584 -165254848 + L1_Rod LINE L1 2582 2639 -3208 6 828 1004 331 47 92 chr1 31940807 31941376 -165254056 - RMER15-int LTR ERVL -556 4443 3886 6 828 430 296 22 29 chr1 31941376 31941515 -165253917 + B1_Mur1 SINE Alu 1 138 -11 6 828 1004 331 47 92 chr1 31941515 31941640 -165253792 - RMER15-int LTR ERVL -1114 3885 3777 6 828 4547 51 2 5 chr1 31941640 31942211 -165253221 - L1Md_F2 LINE L1 0 6582 6014 6 828 1004 331 47 92 chr1 31942211 31942289 -165253143 - RMER15-int LTR ERVL -1223 3776 3705 6 828 210 150 0 0 chr1 31942311 31942351 -165253081 + (T)n Simple_repeat Simple_repeat 1 40 0 6 828 982 100 50 0 chr1 31942355 31942495 -165252937 - B1_Mus1 SINE Alu 0 148 2 6 828 207 0 0 0 chr1 31942497 31942520 -165252912 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 828 678 333 18 15 chr1 31942520 31942794 -165252638 - RMER15-int LTR ERVL -1305 3694 3420 6 828 691 348 108 40 chr1 31943107 31943549 -165251883 - RMER15-int LTR ERVL -1952 3047 2575 6 828 228 122 0 0 chr1 31943549 31943590 -165251842 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 828 207 0 0 0 chr1 31943591 31943614 -165251818 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 828 691 339 212 35 chr1 31943614 31944147 -165251285 - RMER15-int LTR ERVL -2425 2574 1945 6 828 296 278 101 87 chr1 31944163 31944301 -165251131 + Tigger5 DNA MER2_type 118 257 -2149 6 828 1280 330 31 18 chr1 31944783 31945292 -165250140 - RMER15-int LTR ERVL -3446 1553 1038 6 828 3376 233 120 19 chr1 31946819 31947669 -165247763 + MTC-int LTR MaLR 321 1256 -2 6 828 396 143 43 0 chr1 31947680 31947750 -165247682 + MTC LTR MaLR 10 82 -339 6 828 737 248 69 0 chr1 31947775 31947977 -165247455 + ID_B1 SINE B4 2 217 -7 6 828 1228 248 147 0 chr1 31948189 31948454 -165246978 + MTC LTR MaLR 70 373 -48 6 828 215 31 0 30 chr1 31948454 31948487 -165246945 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 6 828 1228 248 147 0 chr1 31948487 31948528 -165246904 + MTC LTR MaLR 374 420 -1 6 828 861 185 84 0 chr1 31948528 31948706 -165246726 - Lx7 LINE L1 -892 6804 6612 6 828 487 239 11 63 chr1 31948708 31948882 -165246550 - Lx6 LINE L1 -2 7458 7294 6 828 2223 239 73 27 chr1 31948876 31949436 -165245996 + Lx6 LINE L1 6609 7194 -266 6 828 424 202 131 0 chr1 31949456 31949555 -165245877 - Lx7 LINE L1 -1096 6600 6489 6 828 521 64 33 6 chr1 31949591 31949672 -165245760 - L1_Mus4 LINE L1 -1751 5893 5804 6 828 5748 80 10 5 chr1 31949672 31950462 -165244970 + L1_Mus4 LINE L1 5841 6634 -2 6 828 180 0 0 0 chr1 31950478 31950498 -165244934 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 828 282 234 0 51 chr1 31950576 31950648 -165244784 + (CCA)n Simple_repeat Simple_repeat 3 71 0 6 828 436 68 14 14 chr1 31950648 31950722 -165244710 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 828 282 234 0 51 chr1 31950722 31950766 -165244666 + (CCA)n Simple_repeat Simple_repeat 3 44 0 6 828 305 127 38 12 chr1 31950796 31950876 -165244556 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 828 434 70 14 0 chr1 31950937 31951008 -165244424 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 828 481 321 21 37 chr1 31951047 31951201 -165244231 + L1_Mur3 LINE L1 4394 4548 -1332 6 828 264 59 0 0 chr1 31951201 31951235 -165244197 + (TTAAA)n Simple_repeat Simple_repeat 4 37 0 6 828 481 321 21 37 chr1 31951235 31951407 -165244025 + L1_Mur3 LINE L1 4549 4715 -1165 6 828 305 301 91 12 chr1 31953225 31953390 -165242042 + MLT2C1 LTR ERVL 20 197 -200 6 828 324 0 0 0 chr1 31953867 31953903 -165241529 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 828 333 0 0 0 chr1 31953903 31953939 -165241493 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 828 312 176 52 47 chr1 31954044 31954276 -165241156 + GA-rich Low_complexity Low_complexity 1 232 0 6 828 196 372 115 11 chr1 31954573 31954747 -165240685 - MIRb SINE MIR -55 213 22 6 828 793 312 35 0 chr1 31955911 31956113 -165239319 + B3 SINE B2 6 214 -2 6 828 23 33 0 0 chr1 31956163 31956193 -165239239 + AT_rich Low_complexity Low_complexity 1 30 0 6 828 949 122 18 0 chr1 31956491 31956655 -165238777 + (TATATG)n Simple_repeat Simple_repeat 4 170 0 6 828 502 120 16 49 chr1 31956655 31956778 -165238654 + (CATATA)n Simple_repeat Simple_repeat 5 123 0 6 828 854 230 233 44 chr1 31956784 31957261 -165238171 - RMER2 LTR ERV1 0 567 1 6 828 357 82 0 0 chr1 31958403 31958452 -165236980 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 828 2505 112 8 0 chr1 31959702 31960077 -165235355 - L1_Mus4 LINE L1 -4 6632 6255 6 828 2418 53 0 0 chr1 31960299 31960599 -165234833 + L1_Mus1 LINE L1 5987 6286 -281 6 828 7389 31 1 0 chr1 31960600 31961471 -165233961 + L1Md_A LINE L1 5710 6581 -1 6 828 2260 55 20 7 chr1 31961479 31961773 -165233659 + L1_Mus1 LINE L1 6270 6567 0 6 828 327 25 0 0 chr1 31961931 31961971 -165233461 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 828 61 52 0 0 chr1 31962719 31962815 -165232617 + AT_rich Low_complexity Low_complexity 1 96 0 6 828 317 321 58 29 chr1 31962951 31963124 -165232308 - LTR16B LTR ERVL 0 463 286 6 828 498 33 0 0 chr1 31963606 31963666 -165231766 + (TTCCC)n Simple_repeat Simple_repeat 1 60 0 6 828 672 172 19 15 chr1 31963666 31963991 -165231441 + CT-rich Low_complexity Low_complexity 1 326 0 6 828 475 227 88 98 chr1 31964040 31964245 -165231187 - B3 SINE B2 -10 206 4 6 828 791 21 10 0 chr1 31964256 31964353 -165231079 + (TTC)n Simple_repeat Simple_repeat 2 99 0 6 828 219 114 0 0 chr1 31964372 31964407 -165231025 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 6 828 1222 259 13 16 chr1 31964710 31965016 -165230416 - Lx LINE L1 -352 7108 6804 6 828 3560 198 190 6 chr1 31965021 31965972 -165229460 - L1_Mur3 LINE L1 -6 5874 4749 6 828 2846 205 0 5 chr1 31966000 31966564 -165228868 - Lx LINE L1 -1 6653 6093 6 828 2627 128 13 0 chr1 31966564 31966955 -165228477 + Lx LINE L1 5371 5766 -117 6 828 1364 221 25 6 chr1 31966960 31967279 -165228153 - Lx LINE L1 -70 6584 6260 6 828 2027 114 0 0 chr1 31967276 31967574 -165227858 + Lx LINE L1 5774 6071 -583 6 828 647 199 21 0 chr1 31967575 31967716 -165227716 - L1_Mur3 LINE L1 -1120 4760 4617 6 828 4586 172 37 61 chr1 31968239 31969345 -165226087 - L1_Mur3 LINE L1 -1259 4621 3542 6 828 903 289 140 43 chr1 31969364 31969827 -165225605 + RMER13A LTR ERVK 30 537 -323 6 828 3317 83 0 17 chr1 31970215 31970680 -165224752 + L1Md_F2 LINE L1 6113 6569 -13 6 828 303 373 139 28 chr1 31970690 31970941 -165224491 + B4A SINE B4 2 280 -12 6 828 22 0 0 0 chr1 31970974 31970996 -165224436 + AT_rich Low_complexity Low_complexity 1 22 0 6 828 184 101 56 42 chr1 31970997 31971069 -165224363 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 6 828 36 0 0 0 chr1 31971766 31971802 -165223630 + AT_rich Low_complexity Low_complexity 1 36 0 6 828 657 192 3 24 chr1 31972005 31972208 -165223224 - Lx4A LINE L1 -1318 5740 5647 6 828 685 280 25 0 chr1 31972210 31972410 -165223022 - Lx9 LINE L1 -188 7456 7252 7 828 1790 182 108 6 chr1 31972730 31973083 -165222349 + ORR1B1 LTR MaLR 1 389 -5 7 828 342 390 53 22 chr1 31973236 31973464 -165221968 + LTR16B LTR ERVL 154 388 -75 7 828 1671 159 22 6 chr1 31973646 31973969 -165221463 + L1_Mur3 LINE L1 3216 3543 -2337 7 828 360 308 124 56 chr1 31974060 31974452 -165220980 - RMER13A LTR ERVK -130 778 269 7 828 785 314 46 18 chr1 31974454 31974758 -165220674 + Lx9 LINE L1 6943 7369 -275 7 828 231 36 0 0 chr1 31974758 31974786 -165220646 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 828 666 340 50 19 chr1 31974786 31974802 -165220630 + Lx9 LINE L1 7259 7273 -200 7 828 24 32 0 0 chr1 31975321 31975352 -165220080 + AT_rich Low_complexity Low_complexity 1 31 0 7 828 399 106 0 0 chr1 31975661 31975727 -165219705 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 828 7114 79 2 2 chr1 31976151 31977110 -165218322 - L1Md_F2 LINE L1 -3 6579 5621 7 828 12850 102 13 11 chr1 31977104 31979806 -165215626 - L1Md_F LINE L1 -2838 3045 338 7 828 590 245 80 6 chr1 31981255 31981431 -165214001 - MTD LTR MaLR -14 405 219 7 103 1235 313 25 0 chr1 31981554 31981909 -165213523 - MTE2b LTR MaLR -10 369 6 7 829 399 41 0 0 chr1 31981976 31982025 -165213407 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 829 28 29 0 0 chr1 31982287 31982322 -165213110 + AT_rich Low_complexity Low_complexity 1 35 0 7 829 938 265 122 25 chr1 31982484 31982817 -165212615 - MTD LTR MaLR -18 401 54 7 829 888 334 14 49 chr1 31982855 31983286 -165212146 + Lx8 LINE L1 6831 7246 -227 7 829 403 396 76 51 chr1 31983605 31983975 -165211457 - MTEa LTR MaLR 0 379 1 7 829 1259 310 129 32 chr1 31983985 31984575 -165210857 - MTEa-int LTR MaLR -13 1567 921 7 829 281 368 44 44 chr1 31984752 31984911 -165210521 - MLT1J2 LTR MaLR -289 159 1 7 829 215 31 0 30 chr1 31985173 31985206 -165210226 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 7 829 6430 119 14 5 chr1 31986259 31987229 -165208203 - L1_Mus4 LINE L1 -10 6626 5648 7 829 3688 63 12 14 chr1 31987229 31987726 -165207706 - LTRIS2 LTR ERV1 0 564 69 7 829 2733 160 4 4 chr1 31987740 31988194 -165207238 - L1_Mus4 LINE L1 -232 5651 5197 7 829 2472 118 51 5 chr1 31988194 31988585 -165206847 - RLTR9E LTR ERVK 0 409 1 7 829 339 123 14 58 chr1 31988595 31988664 -165206768 - ETnERV2-int LTR ERVK -10 7396 7331 7 829 16760 192 36 30 chr1 31988874 31994611 -165200821 - ETnERV2-int LTR ERVK -977 6429 2 7 829 2595 123 5 29 chr1 31994612 31995031 -165200401 - RLTR9E LTR ERVK 0 409 1 7 829 21160 163 16 7 chr1 31995031 31996744 -165198688 - L1_Mus4 LINE L1 -681 5202 3490 7 829 351 0 0 0 chr1 31996744 31996783 -165198649 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 829 21160 163 16 7 chr1 31996783 31997024 -165198408 - L1_Mus4 LINE L1 -2394 3489 3240 7 829 5447 100 20 12 chr1 31997024 31997824 -165197608 - RLTR13D1 LTR ERVK 0 806 1 7 829 21160 163 16 7 chr1 31997824 31998166 -165197266 - L1_Mus4 LINE L1 -2644 3239 2897 7 829 198 0 0 0 chr1 31998166 31998188 -165197244 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 829 21160 155 14 6 chr1 31998188 32000000 -165195432 - L1_Mus4 LINE L1 -2987 2896 1054 7 829 1809 274 19 25 chr1 32000000 32000564 -165194868 - L1VL4 LINE L1 -5604 698 138 1 829 245 200 21 72 chr1 32000754 32000851 -165194581 + A-rich Low_complexity Low_complexity 5 96 0 2 829 973 260 10 7 chr1 32000898 32001188 -165194244 + Lx7 LINE L1 4467 4757 -1123 3 829 638 248 112 0 chr1 32001220 32001434 -165193998 + Lx7 LINE L1 4878 5115 -765 3 829 241 317 9 96 chr1 32001461 32001576 -165193856 - RMER10B LTR ERVL -25 373 269 4 829 400 245 49 30 chr1 32001860 32002024 -165193408 + Lx7 LINE L1 5112 5278 -602 3 829 2386 214 89 60 chr1 32002062 32002306 -165193126 + Lx4B LINE L1 6274 6514 -544 5 829 282 29 0 0 chr1 32002306 32002341 -165193091 + (CATAA)n Simple_repeat Simple_repeat 1 35 0 6 829 2386 214 89 60 chr1 32002341 32002827 -165192605 + Lx4B LINE L1 6515 7025 -33 5 829 890 262 74 28 chr1 32002825 32003151 -165192281 + Lx7 LINE L1 5261 5601 -279 3 829 1008 234 133 41 chr1 32003151 32003490 -165191942 + ORR1D1 LTR MaLR 3 372 -2 7 829 800 237 10 10 chr1 32003494 32003694 -165191738 + Lx7 LINE L1 5603 5802 -1894 3 829 485 316 67 5 chr1 32003809 32004003 -165191429 - B3 SINE B2 -10 206 1 8 829 3446 63 2 2 chr1 32004272 32004718 -165190714 + L1_Mus1 LINE L1 6122 6567 0 9 829 231 274 92 43 chr1 32005404 32005568 -165189864 - LTR41 LTR ERVL -4 764 593 1 829 533 300 106 35 chr1 32005589 32006078 -165189354 + MER44D DNA MER2_type 29 621 -84 1 829 456 51 0 0 chr1 32006078 32006137 -165189295 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 829 533 288 145 39 chr1 32006137 32006204 -165189228 + MER44D DNA MER2_type 622 691 -14 1 829 1068 73 0 0 chr1 32006209 32006360 -165189072 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 1 829 2729 115 59 2 chr1 32006360 32006803 -165188629 - Lx2 LINE L1 -6 6991 6524 1 829 468 0 0 0 chr1 32007180 32007232 -165188200 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 829 21 0 0 0 chr1 32007561 32007582 -165187850 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 3210 51 5 2 chr1 32008109 32008503 -165186929 + MTA_Mm LTR MaLR 2 396 0 1 829 412 355 106 33 chr1 32008760 32009372 -165186060 - L1M5 LINE L1 -1231 4915 4259 1 829 279 0 0 0 chr1 32009512 32009543 -165185889 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 829 611 78 46 15 chr1 32009540 32009671 -165185761 + (CAGAGA)n Simple_repeat Simple_repeat 6 140 0 2 829 579 217 105 0 chr1 32009884 32010036 -165185396 + ORR1B2 LTR MaLR 5 172 -195 2 829 2070 113 32 0 chr1 32010020 32010329 -165185103 - ORR1A2 LTR MaLR -8 319 1 2 829 1052 201 77 0 chr1 32010329 32010534 -165184898 + ORR1B2 LTR MaLR 147 367 0 2 829 37 52 0 0 chr1 32010556 32010614 -165184818 + AT_rich Low_complexity Low_complexity 1 58 0 2 829 21 71 0 0 chr1 32010871 32010913 -165184519 + AT_rich Low_complexity Low_complexity 1 42 0 2 829 284 297 26 43 chr1 32012288 32012404 -165183028 + L1MA4 LINE L1 5817 5930 -370 2 829 963 300 21 75 chr1 32013028 32013348 -165182084 - ORR1E LTR MaLR -41 318 15 2 829 1765 163 6 66 chr1 32013348 32013697 -165181735 - ORR1A4 LTR MaLR 0 329 2 2 829 963 300 21 75 chr1 32013697 32013711 -165181721 - ORR1E LTR MaLR -345 14 2 2 829 282 87 0 0 chr1 32014064 32014124 -165181308 - L1_Mus4 LINE L1 -6 6630 6525 2 829 4246 42 8 5 chr1 32014124 32014774 -165180658 - MTA_Mm-int LTR MaLR -737 1226 1 2 829 3300 46 2 0 chr1 32014774 32015169 -165180263 - MTA_Mm LTR MaLR 0 396 1 2 829 9054 33 6 4 chr1 32015169 32016265 -165179167 - MTA_Mm-int LTR MaLR 0 1098 1 2 829 3309 46 2 0 chr1 32016265 32016660 -165178772 - MTA_Mm LTR MaLR 0 396 1 2 829 9054 33 6 4 chr1 32016660 32017756 -165177676 - MTA_Mm-int LTR MaLR 0 1098 1 2 829 3330 40 2 0 chr1 32017756 32018151 -165177281 - MTA_Mm LTR MaLR 0 396 1 2 829 9080 32 6 4 chr1 32018151 32019247 -165176185 - MTA_Mm-int LTR MaLR 0 1098 1 2 829 3330 40 2 0 chr1 32019247 32019642 -165175790 - MTA_Mm LTR MaLR 0 396 1 2 829 9014 33 6 4 chr1 32019642 32020737 -165174695 - MTA_Mm-int LTR MaLR 0 1098 1 2 829 3349 40 2 0 chr1 32020737 32021132 -165174300 - MTA_Mm LTR MaLR 0 396 1 2 829 9123 29 6 4 chr1 32021132 32022227 -165173205 - MTA_Mm-int LTR MaLR 0 1098 1 2 829 3269 48 2 2 chr1 32022227 32022623 -165172809 - MTA_Mm LTR MaLR 0 396 1 2 829 1757 95 8 8 chr1 32022623 32022878 -165172554 - L1_Mus3 LINE L1 -48 6590 6336 3 829 2674 99 3 0 chr1 32022887 32023260 -165172172 + L1_Mus3 LINE L1 5914 6287 -351 3 829 874 200 99 35 chr1 32025590 32025792 -165169640 + MTD LTR MaLR 193 407 -12 3 829 228 382 40 40 chr1 32025870 32026020 -165169412 + B4A SINE B4 67 216 -76 3 829 6307 42 5 0 chr1 32026967 32027734 -165167698 + L1Md_F3 LINE L1 5813 6583 -1 3 829 695 304 31 89 chr1 32028007 32028332 -165167100 - ORR1E LTR MaLR -31 328 23 3 829 1139 62 0 43 chr1 32028754 32028940 -165166492 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 829 210 324 0 0 chr1 32029024 32029126 -165166306 + T-rich Low_complexity Low_complexity 1 102 0 3 829 6113 64 16 6 chr1 32029216 32030018 -165165414 + L1Md_F2 LINE L1 5761 6570 -12 3 829 24 0 0 0 chr1 32030058 32030082 -165165350 + AT_rich Low_complexity Low_complexity 1 24 0 3 829 191 114 0 28 chr1 32030527 32030563 -165164869 + (TAAAAA)n Simple_repeat Simple_repeat 6 40 0 3 829 314 272 277 0 chr1 32030868 32031052 -165164380 - Tigger7 DNA MER2_type -78 2413 2179 4 829 3665 142 55 10 chr1 32031055 32031658 -165163774 + Lx4A LINE L1 6429 7058 0 4 829 396 0 0 0 chr1 32031665 32031709 -165163723 + (TAA)n Simple_repeat Simple_repeat 1 44 0 4 829 211 184 0 0 chr1 32033087 32033125 -165162307 + (CCTA)n Simple_repeat Simple_repeat 2 39 0 4 829 231 36 0 0 chr1 32033125 32033153 -165162279 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 829 417 20 0 0 chr1 32033283 32033333 -165162099 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 829 762 344 52 0 chr1 32033342 32033592 -165161840 - B4A SINE B4 -20 272 10 4 829 1691 161 58 61 chr1 32034320 32034650 -165160782 - ORR1A4 LTR MaLR 0 329 1 4 829 1585 154 24 283 chr1 32034651 32035104 -165160328 - ORR1A4-int LTR MaLR -1 1962 1092 4 829 57 16 0 0 chr1 32035273 32035337 -165160095 + AT_rich Low_complexity Low_complexity 1 64 0 4 829 1073 191 4 32 chr1 32035355 32035604 -165159828 - Lx7 LINE L1 -1 7695 7454 4 829 416 275 24 32 chr1 32036007 32036131 -165159301 - RMER20B LTR ERVK -504 123 1 5 829 333 0 0 0 chr1 32036161 32036198 -165159234 + (A)n Simple_repeat Simple_repeat 1 37 0 5 829 446 46 0 15 chr1 32037284 32037350 -165158082 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 829 233 200 21 0 chr1 32037361 32037456 -165157976 + (TCTCTG)n Simple_repeat Simple_repeat 4 100 0 5 829 450 49 0 0 chr1 32037459 32037520 -165157912 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 5 829 183 189 0 0 chr1 32037554 32037607 -165157825 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 5 829 228 35 0 0 chr1 32037703 32037732 -165157700 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 829 3166 173 38 22 chr1 32037954 32038555 -165156877 - RMER19C LTR ERVK 0 611 1 5 829 1092 75 0 0 chr1 32038778 32038925 -165156507 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 5 829 420 71 0 0 chr1 32038925 32038981 -165156451 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 5 829 1542 271 43 18 chr1 32039033 32039431 -165156001 - MTD LTR MaLR 0 419 12 6 829 6416 111 8 3 chr1 32040273 32041203 -165154229 + L1_Mus4 LINE L1 5703 6636 0 6 829 330 333 37 31 chr1 32041322 32041483 -165153949 + RSINE1 SINE B4 4 165 0 6 829 185 221 15 0 chr1 32041484 32041552 -165153880 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 829 219 330 98 27 chr1 32041633 32041745 -165153687 - PB1D7 SINE Alu 0 120 1 6 829 316 307 184 7 chr1 32041997 32042138 -165153294 + MER53 DNA hAT 3 168 -25 6 829 255 320 111 39 chr1 32043821 32044029 -165151403 - MLT1A0 LTR MaLR -4 361 139 6 829 1400 269 47 26 chr1 32044600 32044985 -165150447 - MTD LTR MaLR -14 405 13 6 829 848 166 0 17 chr1 32044985 32045071 -165150361 + polypurine Low_complexity Low_complexity 4 88 0 6 829 860 53 0 9 chr1 32045071 32045186 -165150246 + (GGAAA)n Simple_repeat Simple_repeat 3 116 0 6 829 848 166 0 17 chr1 32045186 32045277 -165150155 + polypurine Low_complexity Low_complexity 89 178 0 7 829 207 204 0 0 chr1 32045277 32045321 -165150111 + GA-rich Low_complexity Low_complexity 1 44 0 7 829 238 290 102 9 chr1 32045486 32045594 -165149838 + MLT1E3 LTR MaLR 499 616 -8 7 829 7156 233 81 26 chr1 32045745 32047811 -165147621 - Lx7 LINE L1 -101 7595 5426 7 829 379 297 39 29 chr1 32048577 32048681 -165146751 - RSINE1 SINE B4 -11 154 50 7 829 279 0 0 0 chr1 32048857 32048888 -165146544 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 7 829 3845 108 16 7 chr1 32050883 32051452 -165143980 - Lx3_Mus LINE L1 0 7009 6436 7 829 354 292 30 0 chr1 32051456 32051596 -165143836 + L1MA8 LINE L1 6138 6282 -9 7 829 263 233 66 41 chr1 32052325 32052446 -165142986 - L1MA10 LINE L1 -39 6295 6172 7 829 791 332 26 42 chr1 32052674 32053057 -165142375 + MTE2a LTR MaLR 3 379 0 7 829 650 311 10 0 chr1 32053665 32053871 -165141561 + B3 SINE B2 2 209 -7 8 829 504 184 0 0 chr1 32054011 32054109 -165141323 + CT-rich Low_complexity Low_complexity 4 101 0 8 829 876 142 37 0 chr1 32054383 32054573 -165140859 - URR1B DNA MER1_type 0 225 9 8 829 347 318 67 64 chr1 32055018 32055347 -165140085 + L1MC4 LINE L1 2094 2423 -3792 8 829 706 318 3 108 chr1 32056702 32056823 -165138609 - Lx5 LINE L1 -321 6729 6638 8 829 1101 95 7 0 chr1 32056823 32056970 -165138462 - B1_Mus1 SINE Alu 0 148 1 8 829 733 266 44 29 chr1 32056970 32057227 -165138205 - Lx5 LINE L1 -574 6886 6455 8 829 311 305 49 14 chr1 32057230 32057373 -165138059 - Lx5 LINE L1 -814 6236 6089 8 829 5045 42 2 0 chr1 32057373 32058012 -165137420 - ORR1A0-int LTR MaLR -423 1369 730 8 829 1486 36 5 15 chr1 32057999 32058194 -165137238 - ORR1A0 LTR MaLR -153 193 1 8 829 3669 216 103 8 chr1 32058194 32059245 -165136187 - Lx5 LINE L1 -1122 5928 4767 8 829 24 32 0 0 chr1 32060017 32060048 -165135384 + AT_rich Low_complexity Low_complexity 1 31 0 8 829 3710 58 2 0 chr1 32060239 32060708 -165134724 - L1Md_F3 LINE L1 -170 5713 5244 8 829 6216 49 14 0 chr1 32060708 32061497 -165133935 + L1Md_F3 LINE L1 5771 6570 -14 8 829 309 273 13 0 chr1 32061569 32061646 -165133786 + RSINE1 SINE B4 5 82 -83 8 829 516 32 0 0 chr1 32061669 32061731 -165133701 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 9 829 361 327 82 4 chr1 32061815 32062277 -165133155 + L1M2 LINE L1 3295 3841 -2302 9 829 261 293 73 65 chr1 32062287 32062532 -165132900 + L1M2 LINE L1 4923 5169 -974 9 829 916 256 135 100 chr1 32062598 32063399 -165132033 - Lx5 LINE L1 -1395 4452 3616 8 829 859 278 31 40 chr1 32063497 32063846 -165131586 + RLTR15 LTR ERVK 1 346 -13 9 829 195 100 0 0 chr1 32063925 32063955 -165131477 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 9 829 784 276 128 24 chr1 32063992 32064615 -165130817 + L1_Mur3 LINE L1 2803 3490 -2390 9 829 45 19 0 0 chr1 32066343 32066395 -165129037 + AT_rich Low_complexity Low_complexity 1 52 0 9 829 260 390 80 43 chr1 32066768 32066783 -165128649 - B4A SINE B4 0 292 280 9 829 387 0 0 0 chr1 32066783 32066826 -165128606 + (TATG)n Simple_repeat Simple_repeat 4 46 0 9 829 260 390 80 43 chr1 32066826 32067086 -165128346 - B4A SINE B4 -13 279 7 9 829 778 250 0 145 chr1 32067625 32067873 -165127559 + B3A SINE B2 5 216 0 9 829 390 269 130 7 chr1 32068185 32068331 -165127101 - Lx8 LINE L1 -537 6936 6773 9 829 258 335 55 45 chr1 32068497 32068697 -165126735 + MT2A LTR ERVL 183 384 -149 1 829 227 217 0 0 chr1 32068850 32068896 -165126536 - Lx8 LINE L1 -758 6715 6670 9 829 1453 165 246 0 chr1 32068896 32069205 -165126227 + ORR1B1 LTR MaLR 1 385 -9 1 829 720 341 16 0 chr1 32069210 32069462 -165125970 - Lx8 LINE L1 -799 6674 6419 9 829 668 195 24 36 chr1 32069541 32069706 -165125726 - Lx3A LINE L1 0 6981 6819 1 829 4652 96 4 4 chr1 32069703 32070396 -165125036 + L1_Mur1 LINE L1 3699 4391 -1495 1 829 304 343 89 17 chr1 32070370 32070661 -165124771 - Lx8 LINE L1 -1109 6364 6053 9 829 380 163 21 21 chr1 32071099 32071193 -165124239 - Lx9 LINE L1 -1 7643 7550 1 829 537 58 0 0 chr1 32071381 32071450 -165123982 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 829 1014 166 0 0 chr1 32071460 32071704 -165123728 + GA-rich Low_complexity Low_complexity 1 244 0 1 829 905 299 50 17 chr1 32071705 32072182 -165123250 - L1M2 LINE L1 -866 5277 4785 1 829 1135 160 136 54 chr1 32074367 32074671 -165120761 + IAPEY3_LTR LTR ERVK 1 383 -2 1 829 21 0 0 0 chr1 32075678 32075699 -165119733 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 1906 33 17 4 chr1 32076152 32076392 -165119040 - L1Md_F3 LINE L1 -2 6582 6340 1 829 344 98 0 0 chr1 32076704 32076755 -165118677 + L1Md_F2 LINE L1 6513 6563 -19 1 829 1625 146 0 7 chr1 32077752 32078028 -165117404 - L1_Mm LINE L1 -1003 4880 4607 1 829 23 33 0 0 chr1 32078049 32078079 -165117353 + AT_rich Low_complexity Low_complexity 1 30 0 1 829 2009 240 47 10 chr1 32078138 32078626 -165116806 - Lx7 LINE L1 -446 7250 6745 1 829 245 156 89 0 chr1 32078624 32078669 -165116763 + Lx7 LINE L1 6331 6379 -1317 1 829 1032 311 45 12 chr1 32078938 32079622 -165115810 + L1M2 LINE L1 3438 4160 -1980 1 829 1034 129 0 0 chr1 32079859 32080006 -165115426 + B1_Mus1 SINE Alu 2 148 0 1 829 28 29 0 0 chr1 32080136 32080171 -165115261 + AT_rich Low_complexity Low_complexity 1 35 0 1 829 207 0 0 0 chr1 32080196 32080219 -165115213 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 829 270 77 0 0 chr1 32080483 32080522 -165114910 + L1MA4 LINE L1 5864 5902 -398 1 829 341 219 14 0 chr1 32080541 32080614 -165114818 + Lx6 LINE L1 6584 6657 -803 1 829 2567 255 22 34 chr1 32080611 32081346 -165114086 - Lx6 LINE L1 -873 6587 5862 1 829 297 0 0 0 chr1 32081409 32081442 -165113990 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 829 2190 296 113 79 chr1 32082591 32083736 -165111696 - MTC-int LTR MaLR -7 1251 68 1 829 288 0 0 0 chr1 32083748 32083780 -165111652 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 829 477 34 0 0 chr1 32083781 32083840 -165111592 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 829 1332 266 98 0 chr1 32083971 32084340 -165111092 - MTD LTR MaLR -14 405 1 1 829 301 333 169 20 chr1 32084838 32085092 -165110340 + RMER15 LTR ERVL 284 575 0 1 829 374 20 40 0 chr1 32085343 32085393 -165110039 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1 829 1070 67 0 0 chr1 32085393 32085527 -165109905 - B1_Mus1 SINE Alu -13 135 2 1 829 7257 93 22 19 chr1 32085664 32086771 -165108661 - Lx LINE L1 -6 6648 5540 1 829 1844 79 8 4 chr1 32087085 32087340 -165108092 - L1_Mus2 LINE L1 0 6566 6311 1 829 877 169 65 0 chr1 32087384 32087568 -165107864 + L1_Mus4 LINE L1 6440 6635 -1 1 829 21 36 0 0 chr1 32087994 32088022 -165107410 + AT_rich Low_complexity Low_complexity 1 28 0 1 829 2259 253 85 49 chr1 32088941 32089717 -165105715 + RLTR40 LTR ERVK 1 804 -13 1 829 195 114 0 0 chr1 32091612 32091647 -165103785 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 829 209 298 0 0 chr1 32092107 32092164 -165103268 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 1 829 2725 39 0 0 chr1 32092165 32092503 -165102929 - ORR1A0 LTR MaLR -8 338 1 1 829 13194 65 17 5 chr1 32092503 32094273 -165101159 - ORR1A0-int LTR MaLR 0 1792 1 1 829 2856 46 0 0 chr1 32094273 32094619 -165100813 - ORR1A0 LTR MaLR 0 346 1 1 829 1765 172 105 3 chr1 32096165 32096508 -165098924 + MTC LTR MaLR 6 383 -38 1 829 255 301 96 10 chr1 32096551 32096655 -165098777 - Lx8 LINE L1 -1039 6434 6322 1 829 238 328 31 39 chr1 32096774 32096901 -165098531 + Lx7 LINE L1 6950 7075 -621 1 829 43 56 0 0 chr1 32097199 32097270 -165098162 + AT_rich Low_complexity Low_complexity 1 71 0 1 829 345 47 0 0 chr1 32098704 32098747 -165096685 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 829 383 308 74 42 chr1 32098870 32099060 -165096372 + RMER15 LTR ERVL 325 520 -55 1 829 573 86 0 0 chr1 32099379 32099472 -165095960 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 829 204 40 0 0 chr1 32099772 32099797 -165095635 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 829 31652 96 8 8 chr1 32100062 32105232 -165090200 + L1Md_F2 LINE L1 422 5584 -299 1 829 7113 88 6 14 chr1 32105234 32106223 -165089209 + L1Md_F2 LINE L1 5587 6567 -15 1 829 943 266 172 26 chr1 32106329 32106672 -165088760 + MTD LTR MaLR 13 405 -14 1 829 467 328 68 13 chr1 32106690 32107088 -165088344 - L1M2 LINE L1 -1312 4831 4412 1 829 186 43 0 0 chr1 32107094 32107117 -165088315 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 1 829 7957 58 3 0 chr1 32107125 32108473 -165086959 - L1Md_F2 LINE L1 -12 6570 5219 1 829 319 281 115 22 chr1 32108566 32108792 -165086640 - L1M2 LINE L1 -1958 4185 3939 1 829 597 147 305 40 chr1 32109004 32109181 -165086251 + URR1B DNA MER1_type 2 225 0 1 829 266 316 52 41 chr1 32109390 32109562 -165085870 + MTD LTR MaLR 6 140 -279 1 829 25 0 0 0 chr1 32109864 32109889 -165085543 + AT_rich Low_complexity Low_complexity 1 25 0 1 829 557 299 98 32 chr1 32111153 32111430 -165084002 + Lx8 LINE L1 6728 7022 -451 1 829 1997 40 348 0 chr1 32111435 32111740 -165083692 - RLTR10 LTR ERVK 0 411 1 1 829 27 29 0 0 chr1 32112212 32112246 -165083186 + AT_rich Low_complexity Low_complexity 1 34 0 1 103 576 347 60 9 chr1 32112346 32112776 -165082656 - L1MA9 LINE L1 -35 6277 5826 1 830 22 0 0 0 chr1 32112977 32112999 -165082433 + AT_rich Low_complexity Low_complexity 1 22 0 1 830 319 372 85 25 chr1 32113727 32113928 -165081504 + MLT2B5 LTR ERVL 83 295 -306 1 830 228 294 29 29 chr1 32114288 32114393 -165081039 + Lx7 LINE L1 6308 6412 -1284 1 830 2971 58 8 5 chr1 32114977 32115361 -165080071 - L1Md_F3 LINE L1 -2 6582 6198 1 830 588 352 39 11 chr1 32116483 32116767 -165078665 + Tigger7 DNA MER2_type 31 322 -2169 1 830 311 296 54 27 chr1 32116738 32116849 -165078583 + Tigger7 DNA MER2_type 2130 2243 -248 1 830 710 71 56 7 chr1 32117494 32117636 -165077796 + RMER17B LTR ERVK 310 458 -500 1 830 465 50 0 0 chr1 32117637 32117697 -165077735 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 830 27 29 0 0 chr1 32117884 32117918 -165077514 + AT_rich Low_complexity Low_complexity 1 34 0 1 830 229 281 53 0 chr1 32118224 32118281 -165077151 - B3 SINE B2 -127 89 30 1 830 2539 163 28 2 chr1 32118521 32118945 -165076487 + Lx2B LINE L1 6539 6973 -27 1 830 328 337 93 82 chr1 32118986 32119180 -165076252 + B3A SINE B2 2 197 -1 1 830 373 149 14 0 chr1 32119202 32119276 -165076156 - Lx2A LINE L1 -10 6998 6924 1 830 3487 120 63 35 chr1 32119276 32119882 -165075550 - Lx2A LINE L1 -40 6968 6346 1 830 978 122 0 57 chr1 32119879 32120036 -165075396 + Lx2A1 LINE L1 6236 6383 -625 1 830 307 20 39 39 chr1 32120072 32120124 -165075308 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 1 830 921 110 0 0 chr1 32120128 32120255 -165075177 - B1_Mur4 SINE Alu 0 150 24 1 830 262 253 106 118 chr1 32120132 32120302 -165075130 + YREP_Mm Unknown Unknown 181 348 -1464 1 830 10578 12 0 2 chr1 32120869 32122791 -165072641 - L1Md_T LINE L1 0 6582 4664 1 830 2598 23 2 209 chr1 32122791 32123279 -165072153 + RLTR10 LTR ERVK 1 387 -3 1 830 8224 34 12 2 chr1 32123286 32124272 -165071160 + RLTR10-int LTR ERVK 3 998 -989 1 830 359 271 31 8 chr1 32124336 32124466 -165070966 + RLTR10-int LTR ERVK 1462 1594 -5987 1 830 8792 17 0 1 chr1 32124548 32125544 -165069888 + RLTR10-int LTR ERVK 990 1984 -3 1 830 2598 23 2 209 chr1 32125546 32126034 -165069398 + RLTR10 LTR ERVK 1 387 -3 1 830 27293 41 1 1 chr1 32126039 32131431 -165064001 - L1Md_Gf LINE L1 -1214 4672 1 1 830 21 0 0 0 chr1 32132508 32132529 -165062903 + AT_rich Low_complexity Low_complexity 1 21 0 1 830 30 69 0 0 chr1 32132541 32132599 -165062833 + AT_rich Low_complexity Low_complexity 1 58 0 1 830 27 29 0 0 chr1 32132670 32132704 -165062728 + AT_rich Low_complexity Low_complexity 1 34 0 1 830 516 45 0 0 chr1 32133226 32133293 -165062139 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 830 332 333 38 38 chr1 32133306 32133437 -165061995 - RSINE1 SINE B4 -34 131 1 1 830 487 239 35 50 chr1 32134386 32134527 -165060905 - MTD LTR MaLR -280 139 1 1 830 1246 222 89 0 chr1 32134889 32135146 -165060286 - MTC LTR MaLR -141 280 1 1 830 669 182 58 0 chr1 32135146 32135300 -165060132 - MTC-int LTR MaLR 0 1258 1096 1 830 1547 143 35 39 chr1 32135307 32135590 -165059842 + Lx3A LINE L1 6700 6981 0 1 830 491 138 11 0 chr1 32135702 32135789 -165059643 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 830 591 230 105 63 chr1 32135790 32135840 -165059592 - MTC-int LTR MaLR -216 1042 989 1 830 270 0 0 0 chr1 32135840 32135870 -165059562 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 830 627 198 54 32 chr1 32135870 32136071 -165059361 - MTC LTR MaLR -323 98 1 1 830 270 333 21 10 chr1 32136083 32136180 -165059252 + B4A SINE B4 186 283 -9 1 830 194 98 49 0 chr1 32136316 32136357 -165059075 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 830 1558 191 23 13 chr1 32136367 32136675 -165058757 + Lx4B LINE L1 6723 7033 -25 1 830 315 49 0 0 chr1 32137855 32137896 -165057536 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 830 621 175 0 0 chr1 32138001 32138138 -165057294 + (CA)n Simple_repeat Simple_repeat 2 138 0 1 830 6905 3 0 0 chr1 32138279 32139042 -165056390 + L1Md_A LINE L1 5819 6581 -1 1 830 578 313 114 72 chr1 32139139 32139594 -165055838 + Lx8 LINE L1 6995 7468 -5 1 830 26 0 0 0 chr1 32139647 32139673 -165055759 + AT_rich Low_complexity Low_complexity 1 26 0 1 830 21 36 0 0 chr1 32140020 32140048 -165055384 + AT_rich Low_complexity Low_complexity 1 28 0 1 830 726 227 7 0 chr1 32140547 32140688 -165054744 + B1_Mus1 SINE Alu 1 142 -6 1 830 264 30 0 0 chr1 32140689 32140722 -165054710 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 830 260 266 24 121 chr1 32140783 32140907 -165054525 - PB1D7 SINE Alu -3 117 6 2 830 184 414 47 14 chr1 32140949 32141162 -165054270 + MIR SINE MIR 22 241 -21 2 830 522 0 0 0 chr1 32141415 32141473 -165053959 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 830 904 309 8 38 chr1 32141483 32141749 -165053683 - B4 SINE B4 -10 282 25 2 830 600 270 135 91 chr1 32143004 32143367 -165052065 + MTEa LTR MaLR 1 379 0 2 830 1399 223 85 51 chr1 32143474 32143658 -165051774 + Lx4B LINE L1 6634 6834 -224 2 830 396 0 0 0 chr1 32143658 32143702 -165051730 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 2 830 1399 223 85 51 chr1 32143702 32143928 -165051504 + Lx4B LINE L1 6835 7057 -1 2 830 240 378 113 14 chr1 32145197 32145409 -165050023 + LTR16E1 LTR ERVL 305 537 -1 2 830 683 79 0 73 chr1 32145639 32145762 -165049670 + L1_Mus1 LINE L1 6454 6567 0 2 830 4334 68 9 7 chr1 32147011 32147585 -165047847 + L1Md_F2 LINE L1 6008 6582 0 2 830 237 186 0 0 chr1 32147624 32147667 -165047765 + L1_Mus1 LINE L1 6454 6496 -71 2 830 582 93 0 27 chr1 32147929 32148040 -165047392 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 830 336 293 116 39 chr1 32149093 32149274 -165046158 + RLTR25B LTR ERVK 833 1027 -1 2 830 23 92 0 0 chr1 32150772 32150837 -165044595 + AT_rich Low_complexity Low_complexity 1 65 0 2 830 249 341 61 38 chr1 32150840 32150971 -165044461 - B1F SINE Alu -6 143 10 2 830 21 36 0 0 chr1 32151056 32151084 -165044348 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 435 109 0 0 chr1 32151464 32151528 -165043904 + RMER6D LTR ERVK 1 64 -656 2 830 1912 209 52 50 chr1 32151528 32152098 -165043334 + Lx4B LINE L1 6346 6934 -42 2 830 24 32 0 0 chr1 32152153 32152184 -165043248 + AT_rich Low_complexity Low_complexity 1 31 0 2 830 3613 118 17 42 chr1 32154912 32154990 -165040442 - Lx LINE L1 0 6654 6579 2 830 3155 61 2 2 chr1 32154990 32155386 -165040046 + MTA_Mm LTR MaLR 1 396 0 2 830 3613 118 17 42 chr1 32155386 32155898 -165039534 - Lx LINE L1 -76 6578 6079 2 830 2352 94 18 0 chr1 32155898 32156238 -165039194 + Lx LINE L1 5713 6058 -596 2 830 360 171 30 44 chr1 32157351 32157486 -165037946 + (TA)n Simple_repeat Simple_repeat 1 133 0 2 830 21 36 0 0 chr1 32157814 32157842 -165037590 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 22 88 0 0 chr1 32157861 32157918 -165037514 + AT_rich Low_complexity Low_complexity 1 57 0 2 830 1079 269 80 65 chr1 32157959 32158208 -165037224 + RMER19A LTR ERVK 186 494 -243 2 830 489 17 0 0 chr1 32158208 32158266 -165037166 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 830 1079 221 82 0 chr1 32158266 32158488 -165036944 + RMER19A LTR ERVK 495 736 -1 2 830 819 276 46 19 chr1 32158488 32158795 -165036637 - Lx8 LINE L1 -838 6635 6321 2 830 21 0 0 0 chr1 32158795 32158816 -165036616 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 790 251 161 70 chr1 32158872 32159275 -165036157 - RMER10A LTR ERVL -2 440 1 2 830 714 272 91 33 chr1 32159324 32159720 -165035712 - Lx9 LINE L1 -1615 6081 5681 2 830 228 299 9 61 chr1 32159902 32160016 -165035416 - L1M3e LINE L1 -6876 154 47 2 830 212 338 0 15 chr1 32160532 32160598 -165034834 + B4A SINE B4 82 146 -146 2 830 405 279 0 37 chr1 32160545 32160653 -165034779 + PB1D10 SINE Alu 10 113 -4 2 830 272 297 16 0 chr1 32160669 32160733 -165034699 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 2 830 22 0 0 0 chr1 32160800 32160822 -165034610 + AT_rich Low_complexity Low_complexity 1 22 0 2 830 801 269 62 5 chr1 32161094 32161288 -165034144 + MTD LTR MaLR 1 205 -214 2 830 546 324 77 0 chr1 32161310 32161492 -165033940 + ID_B1 SINE B4 29 224 0 2 830 240 353 0 12 chr1 32161924 32162010 -165033422 - MLT1C LTR MaLR -38 429 345 2 830 1168 262 67 13 chr1 32162115 32162437 -165032995 - MTEb LTR MaLR -66 313 1 2 830 477 34 0 0 chr1 32163150 32163209 -165032223 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 830 872 209 48 96 chr1 32163237 32163528 -165031904 - Lx7 LINE L1 -45 7651 7375 2 830 32 57 0 0 chr1 32163561 32163614 -165031818 + AT_rich Low_complexity Low_complexity 1 53 0 2 830 1162 219 126 4 chr1 32163650 32163920 -165031512 - Lx7 LINE L1 -356 7340 7038 2 830 6854 220 60 37 chr1 32163910 32165195 -165030237 - Lx7 LINE L1 -1268 6428 5097 2 830 666 0 0 0 chr1 32165195 32165269 -165030163 + (CTCTG)n Simple_repeat Simple_repeat 4 77 0 2 830 6854 205 45 46 chr1 32165269 32165443 -165029989 - Lx7 LINE L1 -784 5096 4960 2 830 1182 75 0 0 chr1 32165443 32165590 -165029842 - B1_Mus2 SINE Alu 0 147 1 2 830 6854 205 45 46 chr1 32165590 32165910 -165029522 - Lx7 LINE L1 -921 4959 4636 2 830 207 0 0 0 chr1 32165910 32165933 -165029499 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 830 429 54 0 0 chr1 32165942 32165998 -165029434 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 830 6854 205 45 46 chr1 32165998 32166503 -165028929 - Lx7 LINE L1 -1252 4628 4113 2 830 1097 221 37 64 chr1 32166474 32166851 -165028581 - Lx7 LINE L1 -2563 3317 2951 2 830 7458 138 31 7 chr1 32166841 32168948 -165026484 + Lx LINE L1 4478 6640 -14 2 830 1612 174 76 96 chr1 32168969 32169440 -165025992 - Lx7 LINE L1 -2921 2959 2498 2 830 30 27 0 0 chr1 32169750 32169787 -165025645 + AT_rich Low_complexity Low_complexity 1 37 0 2 830 341 312 65 58 chr1 32169945 32170166 -165025266 - Lx9 LINE L1 -1670 5974 5751 2 830 283 89 36 0 chr1 32170166 32170222 -165025210 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 830 341 312 65 58 chr1 32170222 32170293 -165025139 - Lx9 LINE L1 -1894 5750 5681 2 830 787 229 81 79 chr1 32170302 32170695 -165024737 + L1_Rod LINE L1 3094 3487 -2360 2 830 1843 117 145 3 chr1 32170707 32171017 -165024415 + Lx3C LINE L1 6621 6974 -2 2 830 2313 156 209 33 chr1 32172050 32172572 -165022860 + Lx2 LINE L1 6383 6996 -1 2 830 426 39 0 0 chr1 32173821 32173873 -165021559 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 830 980 96 7 0 chr1 32174407 32174553 -165020879 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 2 830 1570 131 14 53 chr1 32175242 32175524 -165019908 - Lx2B LINE L1 -556 6444 6174 2 830 775 230 174 50 chr1 32175832 32176194 -165019238 + RLTR9E LTR ERVK 1 407 -2 2 830 21 36 0 0 chr1 32176701 32176729 -165018703 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 402 57 0 0 chr1 32176822 32176875 -165018557 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 830 451 299 45 40 chr1 32177193 32177409 -165018023 + MLT1B LTR MaLR 171 365 0 2 830 219 333 0 0 chr1 32177778 32177841 -165017591 + ID2 SINE ID 2 64 -19 2 830 672 273 60 123 chr1 32177845 32178292 -165017140 - RLTR23 LTR ERV1 -4 426 8 2 830 549 44 0 0 chr1 32178328 32178396 -165017036 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 2 830 1548 239 141 14 chr1 32178633 32179079 -165016353 - RMER19C LTR ERVK 0 611 138 2 830 340 95 40 0 chr1 32179192 32179266 -165016166 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 2 830 510 17 0 0 chr1 32179287 32179346 -165016086 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 830 477 50 0 0 chr1 32179346 32179405 -165016027 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 830 685 305 11 0 chr1 32179432 32179606 -165015826 - B3A SINE B2 -18 180 5 2 830 712 303 32 20 chr1 32179753 32180002 -165015430 + Lx6 LINE L1 7182 7433 -27 2 830 23 0 0 0 chr1 32180252 32180275 -165015157 + AT_rich Low_complexity Low_complexity 1 23 0 2 830 1161 75 0 0 chr1 32180293 32180440 -165014992 + B1_Mus2 SINE Alu 1 147 0 2 830 183 317 110 0 chr1 32181258 32181340 -165014092 + L2a LINE L2 3335 3425 -1 2 830 180 294 28 56 chr1 32181727 32181799 -165013633 - L4 LINE RTE -1474 555 486 2 830 430 327 108 9 chr1 32181886 32182099 -165013333 - RMER15 LTR ERVL 0 575 342 2 830 746 162 77 50 chr1 32182374 32182556 -165012876 + B2_Mm2 SINE B2 1 187 -8 2 830 2645 147 162 98 chr1 32183122 32183825 -165011607 + RMER6A LTR ERVK 3 750 -6 2 830 434 267 115 33 chr1 32184750 32184932 -165010500 - L1MC1 LINE L1 -23 6310 6114 2 830 283 273 88 61 chr1 32185005 32185153 -165010279 + B3 SINE B2 64 215 -1 2 830 243 217 0 14 chr1 32185252 32185322 -165010110 - L1M2 LINE L1 -921 5222 5154 2 830 3131 60 9 21 chr1 32185329 32185757 -165009675 - L1_Mus2 LINE L1 0 6566 6144 2 830 312 27 0 0 chr1 32186070 32186107 -165009325 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 830 431 218 37 0 chr1 32186176 32186308 -165009124 - Lx7 LINE L1 -622 5822 5674 2 830 606 286 96 10 chr1 32186313 32186521 -165008911 + RMER20A LTR ERVK 13 238 -278 2 830 4420 69 0 17 chr1 32186521 32187145 -165008287 - L1_Mus1 LINE L1 0 6567 5990 2 830 2057 67 0 0 chr1 32187145 32187412 -165008020 + L1_Mus1 LINE L1 5712 5978 -589 2 830 897 281 105 23 chr1 32187412 32187718 -165007714 + RMER20A LTR ERVK 186 516 0 2 830 490 302 83 27 chr1 32187718 32188027 -165007405 - Lx7 LINE L1 -236 5644 5342 2 830 21 36 0 0 chr1 32188153 32188181 -165007251 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 235 279 0 0 chr1 32188488 32188549 -165006883 - L1_Mur1 LINE L1 -3647 2239 2179 2 830 323 324 0 0 chr1 32189603 32189677 -165005755 + RSINE1 SINE B4 78 151 -14 2 830 207 0 0 0 chr1 32189688 32189711 -165005721 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 830 279 0 0 0 chr1 32189711 32189741 -165005691 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 830 288 0 0 0 chr1 32190020 32190052 -165005380 + (T)n Simple_repeat Simple_repeat 1 32 0 2 830 7908 57 1 3 chr1 32190091 32191660 -165003772 - L1Md_F2 LINE L1 0 6582 5020 2 830 3291 85 0 4 chr1 32191657 32192107 -165003325 + L1Md_F2 LINE L1 4597 5044 -839 2 830 464 356 93 12 chr1 32192683 32192845 -165002587 - B3A SINE B2 -22 176 2 2 830 479 221 5 19 chr1 32194391 32194611 -165000821 + GA-rich Low_complexity Low_complexity 1 216 0 2 830 22 70 0 0 chr1 32195362 32195405 -165000027 + AT_rich Low_complexity Low_complexity 1 43 0 2 830 382 234 50 8 chr1 32195722 32195850 -164999582 + L1_Mur1 LINE L1 5538 5680 -514 2 830 2069 278 99 36 chr1 32195897 32196784 -164998648 - Lx9 LINE L1 -516 7128 6186 2 830 185 128 0 21 chr1 32196850 32196898 -164998534 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 2 830 24 53 0 0 chr1 32196915 32196953 -164998479 + AT_rich Low_complexity Low_complexity 1 38 0 2 830 405 232 5 48 chr1 32197371 32197557 -164997875 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 3 830 8049 48 1 1 chr1 32198194 32199256 -164996176 - L1Md_F2 LINE L1 -2 6580 5519 3 830 366 23 0 0 chr1 32199386 32199429 -164996003 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 830 472 205 12 18 chr1 32199432 32199596 -164995836 + (TA)n Simple_repeat Simple_repeat 1 163 0 3 830 227 81 27 0 chr1 32199707 32199744 -164995688 - L1Md_A LINE L1 -615 5967 5930 3 830 24 53 0 0 chr1 32200349 32200387 -164995045 + AT_rich Low_complexity Low_complexity 1 38 0 3 830 4553 158 32 12 chr1 32200677 32201482 -164993950 + Lx2 LINE L1 5818 6638 -359 3 830 1204 139 13 51 chr1 32201482 32201717 -164993715 + Lx2 LINE L1 6771 6996 -1 3 830 24 0 0 0 chr1 32201790 32201814 -164993618 + AT_rich Low_complexity Low_complexity 1 24 0 3 830 386 319 17 0 chr1 32201835 32201954 -164993478 - B1F SINE Alu -28 121 1 3 830 405 39 0 0 chr1 32202303 32202354 -164993078 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 830 1540 219 8 79 chr1 32202625 32203007 -164992425 - ORR1B1 LTR MaLR -8 386 1 3 830 21 57 0 0 chr1 32203056 32203091 -164992341 + AT_rich Low_complexity Low_complexity 1 35 0 3 830 638 265 106 0 chr1 32203103 32203273 -164992159 - B3 SINE B2 -20 196 9 3 830 281 330 32 11 chr1 32203417 32203435 -164991997 + B1F SINE Alu 46 85 -64 3 830 288 204 37 0 chr1 32203435 32203489 -164991943 + ID_B1 SINE B4 141 196 -28 3 830 281 330 32 11 chr1 32203489 32203512 -164991920 + B1F SINE Alu 86 142 -7 3 830 510 17 0 0 chr1 32203624 32203683 -164991749 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 830 426 289 69 43 chr1 32203935 32204123 -164991309 - B3A SINE B2 -2 196 4 3 830 397 275 88 52 chr1 32204268 32204517 -164990915 + L1M5 LINE L1 2688 2945 -3201 3 830 1148 64 0 0 chr1 32204728 32204868 -164990564 - B1_Mus1 SINE Alu -7 141 2 3 830 631 326 115 40 chr1 32204880 32205602 -164989830 + L1M5 LINE L1 3829 4604 -1542 3 830 1568 251 170 4 chr1 32205630 32206090 -164989342 + Lx7 LINE L1 6271 6806 -890 3 830 336 119 0 0 chr1 32206609 32206668 -164988764 + (ACTAG)n Simple_repeat Simple_repeat 5 63 0 3 830 3136 44 28 0 chr1 32206829 32207216 -164988216 + L1Md_F3 LINE L1 6173 6570 -14 3 830 207 0 0 0 chr1 32207239 32207262 -164988170 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 830 1933 110 53 13 chr1 32207268 32207572 -164987860 + Lx2 LINE L1 6676 6991 -6 3 830 538 303 47 5 chr1 32208373 32208585 -164986847 + B4A SINE B4 9 229 -63 3 830 212 59 29 0 chr1 32209188 32209222 -164986210 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 830 22 35 0 0 chr1 32209530 32209559 -164985873 + AT_rich Low_complexity Low_complexity 1 29 0 3 830 211 390 22 7 chr1 32210425 32210562 -164984870 - MIR SINE MIR -4 258 120 3 830 327 275 50 8 chr1 32211291 32211412 -164984020 - L1MA6 LINE L1 -387 5913 5788 3 830 231 345 40 31 chr1 32211411 32211533 -164983899 + L1MA6 LINE L1 6059 6184 -116 3 830 1131 65 0 0 chr1 32211533 32211672 -164983760 + B1_Mus1 SINE Alu 1 139 -9 3 830 207 0 0 0 chr1 32211673 32211696 -164983736 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 3 830 231 345 40 31 chr1 32211696 32211798 -164983634 + L1MA6 LINE L1 6185 6287 -13 3 830 351 0 0 0 chr1 32211851 32211890 -164983542 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 830 234 0 0 0 chr1 32211890 32211915 -164983517 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 830 333 0 0 0 chr1 32211915 32211951 -164983481 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 830 477 0 0 0 chr1 32213366 32213419 -164982013 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 830 235 67 67 0 chr1 32213913 32213958 -164981474 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 3 830 182 286 28 28 chr1 32214211 32214283 -164981149 + MIR SINE MIR 44 115 -147 3 830 24 0 0 0 chr1 32214982 32215006 -164980426 + AT_rich Low_complexity Low_complexity 1 24 0 3 830 590 326 69 4 chr1 32216565 32216827 -164978605 + B4A SINE B4 1 279 -13 3 830 348 184 29 0 chr1 32217313 32217416 -164978016 + (TA)n Simple_repeat Simple_repeat 1 106 0 3 830 231 103 0 0 chr1 32218273 32218312 -164977120 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 830 573 15 0 0 chr1 32218312 32218377 -164977055 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 830 339 256 8 57 chr1 32218620 32218744 -164976688 + MER66-int LTR ERV1 2511 2628 -4048 3 830 582 307 57 9 chr1 32219080 32219307 -164976125 - Lx8 LINE L1 -1015 6458 6221 3 830 11231 9 0 0 chr1 32219364 32221323 -164974109 - L1Md_A LINE L1 -1 6581 4623 3 830 370 323 64 94 chr1 32221434 32221902 -164973530 + RLTR12B LTR ERVK 47 500 -28 3 830 1784 169 125 5 chr1 32221915 32222284 -164973148 + MTC LTR MaLR 1 413 -8 3 830 184 268 13 66 chr1 32223589 32223665 -164971767 + L2 LINE L2 2540 2611 -808 3 830 299 339 37 0 chr1 32223833 32223942 -164971490 - PB1D10 SINE Alu -4 113 1 3 830 400 307 106 77 chr1 32224281 32224659 -164970773 - L1MC4 LINE L1 -2 8040 7652 3 830 360 321 30 30 chr1 32224774 32224909 -164970523 - B1F1 SINE Alu -5 144 10 3 830 321 259 99 21 chr1 32224984 32225126 -164970306 - L1MB2 LINE L1 -33 6138 5986 3 830 311 206 0 29 chr1 32226752 32226803 -164968629 + polypyrimidine Low_complexity Low_complexity 21 71 0 3 830 1010 143 6 0 chr1 32226803 32226978 -164968454 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 3 830 311 206 0 29 chr1 32226978 32226996 -164968436 + polypyrimidine Low_complexity Low_complexity 5 20 0 3 830 638 164 8 0 chr1 32226996 32227118 -164968314 + CT-rich Low_complexity Low_complexity 2 124 0 3 830 240 368 44 70 chr1 32227186 32227414 -164968018 - B4A SINE B4 -66 226 5 3 830 36 0 0 0 chr1 32230170 32230206 -164965226 + AT_rich Low_complexity Low_complexity 1 36 0 3 830 28 0 0 0 chr1 32231293 32231321 -164964111 + AT_rich Low_complexity Low_complexity 1 28 0 3 830 183 263 132 0 chr1 32232567 32232643 -164962789 + MIR3 SINE MIR 96 181 -27 3 830 249 108 0 0 chr1 32232705 32232742 -164962690 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 3 830 222 118 0 0 chr1 32234037 32234071 -164961361 + (T)n Simple_repeat Simple_repeat 1 34 0 3 830 2006 139 36 0 chr1 32234353 32234685 -164960747 - ORR1A1 LTR MaLR -2 344 1 3 830 180 330 41 57 chr1 32235843 32235965 -164959467 + L2c LINE L2 3022 3141 -246 3 830 2269 211 34 6 chr1 32236696 32237193 -164958239 - Lx2B LINE L1 -386 6614 6104 3 830 400 194 0 67 chr1 32237185 32237199 -164958233 - Lx3C LINE L1 -940 6036 6026 3 830 531 45 0 0 chr1 32237199 32237265 -164958167 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 3 830 400 194 0 67 chr1 32237265 32237355 -164958077 - Lx3C LINE L1 -951 6025 5939 3 830 733 185 96 0 chr1 32237378 32237513 -164957919 + B1_Mur4 SINE Alu 2 149 -1 3 830 21 71 0 0 chr1 32237513 32237555 -164957877 + AT_rich Low_complexity Low_complexity 1 42 0 3 830 31 68 0 0 chr1 32237607 32237666 -164957766 + AT_rich Low_complexity Low_complexity 1 59 0 3 830 354 74 0 0 chr1 32238819 32238873 -164956559 + (TTA)n Simple_repeat Simple_repeat 3 56 0 3 830 261 83 0 0 chr1 32239042 32239078 -164956354 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 830 263 303 49 56 chr1 32239653 32239919 -164955513 - Lx9 LINE L1 -42 7602 7339 3 830 219 388 20 10 chr1 32240858 32240957 -164954475 - L2b LINE L2 -187 3188 3089 3 830 2972 207 64 8 chr1 32241159 32241769 -164953663 - Lx5 LINE L1 -13 7037 6394 3 830 400 346 14 36 chr1 32242354 32242398 -164953034 + ID_B1 SINE B4 41 175 -49 3 830 401 298 32 0 chr1 32242398 32242492 -164952940 + B1F1 SINE Alu 1 97 -52 3 830 298 0 0 45 chr1 32242981 32243025 -164952407 + (TTA)n Simple_repeat Simple_repeat 3 44 0 3 831 303 340 78 31 chr1 32244015 32244206 -164951226 - L1ME2 LINE L1 -9 6155 5956 3 831 265 320 58 19 chr1 32244273 32244429 -164951003 - L1ME2 LINE L1 -590 5854 5693 3 831 224 302 132 0 chr1 32244463 32244569 -164950863 - B1_Mur2 SINE Alu -29 120 1 3 831 279 299 117 15 chr1 32244677 32244942 -164950490 - L1ME2 LINE L1 -614 5550 5259 3 831 762 109 9 0 chr1 32245019 32245129 -164950303 - Lx3B LINE L1 -1276 5697 5587 3 831 2091 109 35 112 chr1 32245140 32245542 -164949890 + Lx3B LINE L1 6114 6484 -489 3 831 2720 52 46 0 chr1 32245548 32245897 -164949535 - L1_Mus2 LINE L1 0 6566 6202 3 831 522 0 0 0 chr1 32246985 32247043 -164948389 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 831 669 326 83 15 chr1 32247043 32247570 -164947862 - L1MA4 LINE L1 -369 5931 5369 3 831 228 312 65 0 chr1 32247633 32247726 -164947706 - L1_Rod LINE L1 -629 5218 5120 3 831 453 36 0 0 chr1 32248155 32248210 -164947222 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 831 2422 49 0 3 chr1 32248476 32248784 -164946648 + L1Md_F2 LINE L1 6265 6571 -11 3 831 258 32 0 0 chr1 32248792 32248823 -164946609 + (A)n Simple_repeat Simple_repeat 1 31 0 3 831 225 200 0 0 chr1 32249065 32249110 -164946322 + A-rich Low_complexity Low_complexity 1 45 0 3 831 347 127 16 0 chr1 32249985 32250048 -164945384 + (CCCCCT)n Simple_repeat Simple_repeat 5 68 0 3 831 443 294 8 76 chr1 32250243 32250495 -164944937 - Lx9 LINE L1 -1694 5950 5680 3 831 449 293 98 111 chr1 32250511 32250991 -164944441 + RLTR11A2 LTR ERVK 7 499 -29 3 831 345 249 137 34 chr1 32251040 32251215 -164944217 - Lx9 LINE L1 -189 5658 5466 3 831 499 195 73 15 chr1 32251206 32251399 -164944033 - L1_Mur3 LINE L1 -459 5421 5218 3 831 21 0 0 0 chr1 32252792 32252813 -164942619 + AT_rich Low_complexity Low_complexity 1 21 0 3 831 23 0 0 0 chr1 32253470 32253493 -164941939 + AT_rich Low_complexity Low_complexity 1 23 0 3 831 562 257 2 7 chr1 32255383 32255793 -164939639 + (TA)n Simple_repeat Simple_repeat 1 407 0 3 831 38 22 0 0 chr1 32257135 32257180 -164938252 + AT_rich Low_complexity Low_complexity 1 45 0 3 831 195 42 0 0 chr1 32258125 32258149 -164937283 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 831 372 88 0 0 chr1 32259015 32259072 -164936360 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 831 1120 211 118 65 chr1 32259325 32259680 -164935752 + ORR1D1 LTR MaLR 1 374 0 4 831 313 282 146 0 chr1 32260377 32260480 -164934952 + L2a LINE L2 3309 3426 0 4 831 497 258 52 73 chr1 32260985 32261177 -164934255 + B2_Mm2 SINE B2 1 188 -7 4 831 22 35 0 0 chr1 32261288 32261317 -164934115 + AT_rich Low_complexity Low_complexity 1 29 0 4 831 907 127 20 95 chr1 32261837 32262037 -164933395 + B2_Mm2 SINE B2 3 187 -8 4 831 979 80 0 0 chr1 32262917 32263054 -164932378 - L1_Mus2 LINE L1 0 6566 6430 4 831 1076 65 0 0 chr1 32263054 32263192 -164932240 + L1_Mus2 LINE L1 5862 5999 -567 4 831 6506 108 24 22 chr1 32263236 32263730 -164931702 - RLTR13D2 LTR ERVK 0 1023 536 4 831 1612 132 12 81 chr1 32263730 32264076 -164931356 - RLTRETN_Mm LTR ERVK 0 322 1 4 831 6506 108 24 22 chr1 32264076 32264603 -164930829 - RLTR13D2 LTR ERVK -488 535 1 4 831 22 0 0 0 chr1 32265575 32265597 -164929835 + AT_rich Low_complexity Low_complexity 1 22 0 4 831 232 91 22 22 chr1 32265609 32265654 -164929778 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 831 270 286 14 54 chr1 32265663 32265675 -164929757 - RSINE1 SINE B4 -12 153 142 4 831 267 114 0 0 chr1 32265675 32265719 -164929713 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 831 270 286 14 54 chr1 32265719 32265780 -164929652 - RSINE1 SINE B4 -24 141 84 4 831 440 189 14 0 chr1 32265865 32265939 -164929493 + Lx5 LINE L1 6488 6562 -488 4 831 2527 242 23 0 chr1 32267566 32268090 -164927342 - Lx6 LINE L1 -5 7455 6920 4 831 540 0 0 0 chr1 32268094 32268154 -164927278 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 831 3584 159 25 6 chr1 32268154 32268839 -164926593 - L1_Mur3 LINE L1 -1280 4600 3903 4 831 24 0 0 0 chr1 32268909 32268933 -164926499 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 1816 124 28 35 chr1 32268979 32269297 -164926135 - RLTR9D LTR ERVK -87 316 1 4 831 4497 78 34 34 chr1 32269298 32269984 -164925448 - Lx3_Mus LINE L1 -630 6379 5694 4 831 669 160 0 0 chr1 32269984 32270084 -164925348 - U6 snRNA snRNA -7 100 1 4 831 23 0 0 0 chr1 32270310 32270333 -164925099 + AT_rich Low_complexity Low_complexity 1 23 0 4 831 189 300 43 32 chr1 32270384 32270477 -164924955 + L2 LINE L2 1288 1381 -2038 4 831 416 260 76 18 chr1 32271909 32272075 -164923357 + L1MC3 LINE L1 7525 7685 -100 4 831 537 272 40 23 chr1 32272351 32272528 -164922904 + Lx8 LINE L1 7050 7229 -244 4 831 23 54 0 0 chr1 32272676 32272713 -164922719 + AT_rich Low_complexity Low_complexity 1 37 0 4 831 3536 63 19 4 chr1 32272999 32273464 -164921968 + L1Md_F2 LINE L1 6110 6581 -1 4 831 5757 174 141 6 chr1 32273753 32274996 -164920436 + Lx2B LINE L1 5588 6997 -3 4 831 2695 57 0 59 chr1 32275563 32275953 -164919479 - L1Md_F3 LINE L1 -1 6583 6217 4 831 2247 57 0 0 chr1 32275953 32276232 -164919200 + L1Md_F3 LINE L1 5916 6194 -388 4 831 480 86 0 0 chr1 32276447 32276517 -164918915 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 831 668 98 10 0 chr1 32276616 32276718 -164918714 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 831 28 0 0 0 chr1 32277393 32277421 -164918011 + AT_rich Low_complexity Low_complexity 1 28 0 4 831 374 285 36 14 chr1 32277438 32277577 -164917855 + ID_B1 SINE B4 82 223 -1 4 831 259 65 21 21 chr1 32277655 32277702 -164917730 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 831 1025 231 1 86 chr1 32278016 32278336 -164917096 - L1VL1 LINE L1 -5933 485 18 4 831 1097 247 90 27 chr1 32278371 32278671 -164916761 + ORR1D1 LTR MaLR 1 319 -55 4 831 238 243 3 20 chr1 32278731 32278811 -164916621 + ORR1C2 LTR MaLR 268 383 -1 4 831 644 24 12 0 chr1 32278853 32278935 -164916497 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 831 195 42 0 0 chr1 32278935 32278958 -164916474 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 831 30 45 0 0 chr1 32279323 32279367 -164916065 + AT_rich Low_complexity Low_complexity 1 44 0 4 831 315 65 0 0 chr1 32279824 32279870 -164915562 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 831 228 232 211 0 chr1 32279872 32279967 -164915465 + L1M2 LINE L1 5677 5791 -500 4 831 192 182 0 0 chr1 32279975 32280019 -164915413 + T-rich Low_complexity Low_complexity 1 44 0 4 831 354 45 0 0 chr1 32281196 32281240 -164914192 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 831 414 339 24 12 chr1 32281351 32281518 -164913914 - Lx8 LINE L1 -450 7023 6855 4 831 508 337 88 38 chr1 32282961 32283384 -164912048 - LTR40a LTR ERVL -75 444 1 4 831 467 377 26 5 chr1 32283643 32283835 -164911597 + B3A SINE B2 1 196 -2 4 831 83 29 0 0 chr1 32284099 32284203 -164911229 + AT_rich Low_complexity Low_complexity 1 104 0 4 831 5478 88 1 0 chr1 32284456 32285186 -164910246 + L1_Mus1 LINE L1 5837 6567 0 4 831 25 0 0 0 chr1 32285481 32285506 -164909926 + AT_rich Low_complexity Low_complexity 1 25 0 4 831 600 53 0 0 chr1 32286510 32286586 -164908846 + (TTCTC)n Simple_repeat Simple_repeat 4 79 0 4 831 182 62 31 0 chr1 32286588 32286620 -164908812 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 4 831 1177 68 0 0 chr1 32286622 32286768 -164908664 - B1_Mus2 SINE Alu 0 147 2 4 831 1706 208 86 0 chr1 32286926 32287286 -164908146 - ORR1B1 LTR MaLR -3 391 1 4 831 3819 244 82 48 chr1 32287286 32288021 -164907411 - ORR1B1-int LTR MaLR -191 1772 988 4 831 2133 54 113 9 chr1 32288021 32288357 -164907075 - RLTR10 LTR ERVK -18 372 2 4 831 3819 244 82 48 chr1 32288357 32289278 -164906154 - ORR1B1-int LTR MaLR -191 987 1 4 831 1919 153 62 14 chr1 32289290 32289647 -164905785 - ORR1B1 LTR MaLR -20 374 1 4 831 35 78 0 0 chr1 32290460 32290537 -164904895 + AT_rich Low_complexity Low_complexity 1 77 0 4 831 1973 280 37 37 chr1 32290645 32291324 -164904108 - Lx9 LINE L1 -179 7465 6787 4 831 215 273 15 0 chr1 32291349 32291415 -164904017 + PB1 SINE Alu 21 87 -40 4 831 328 301 38 0 chr1 32291997 32292130 -164903302 + L1M2 LINE L1 4227 4364 -1779 4 831 1243 203 84 6 chr1 32292633 32292955 -164902477 - Lx9 LINE L1 -16 7628 7282 4 831 865 276 103 10 chr1 32293168 32293564 -164901868 - L1MA6 LINE L1 -215 6085 5653 4 831 272 102 20 0 chr1 32293933 32293982 -164901450 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 831 465 285 107 21 chr1 32295461 32295601 -164899831 - RSINE1 SINE B4 -11 154 3 4 831 200 189 0 0 chr1 32296627 32296664 -164898768 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 831 477 338 43 6 chr1 32296916 32297080 -164898352 - B4A SINE B4 -15 277 108 4 831 351 322 92 15 chr1 32297263 32297600 -164897832 - L1M2 LINE L1 -1092 5051 4689 4 831 271 300 44 21 chr1 32298880 32298983 -164896449 + B1F1 SINE Alu 10 115 -34 4 831 275 329 0 38 chr1 32299025 32299104 -164896328 + ID4 SINE ID 3 78 -5 4 831 25 0 0 0 chr1 32300282 32300307 -164895125 + AT_rich Low_complexity Low_complexity 1 25 0 4 831 486 103 0 0 chr1 32301204 32301282 -164894150 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 831 21 0 0 0 chr1 32301339 32301360 -164894072 + AT_rich Low_complexity Low_complexity 1 21 0 4 831 2084 122 0 68 chr1 32302835 32303186 -164892246 + ORR1A4 LTR MaLR 3 329 0 4 831 2112 166 15 47 chr1 32303186 32303591 -164891841 + ORR1A4-int LTR MaLR 1 392 -1571 4 831 368 184 39 13 chr1 32303575 32303652 -164891780 + ORR1A4 LTR MaLR 244 322 -7 4 831 189 0 0 0 chr1 32304449 32304470 -164890962 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 4 831 189 224 57 123 chr1 32305621 32305743 -164889689 + L4 LINE RTE 1763 1876 -153 4 831 3056 257 85 55 chr1 32306022 32306953 -164888479 - Lx6 LINE L1 -4 7456 6498 4 831 273 261 0 0 chr1 32307204 32307296 -164888136 + T-rich Low_complexity Low_complexity 1 92 0 4 831 259 367 70 5 chr1 32307296 32307496 -164887936 + L1M4c LINE L1 102 314 -6070 4 831 1289 183 9 4 chr1 32307590 32307821 -164887611 - RLTR20A LTR ERVK -309 232 1 4 831 228 111 0 0 chr1 32307854 32307890 -164887542 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 831 1089 292 109 42 chr1 32307898 32308598 -164886834 + L1M4c LINE L1 831 1597 -4787 4 831 258 32 0 0 chr1 32308598 32308629 -164886803 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 831 1089 292 109 42 chr1 32308629 32308764 -164886668 + L1M4c LINE L1 1598 1722 -4662 4 831 244 94 19 19 chr1 32309298 32309352 -164886080 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 831 1679 224 124 78 chr1 32310563 32311062 -164884370 - Lx5 LINE L1 0 7050 6529 4 831 306 50 0 0 chr1 32313256 32313296 -164882136 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 831 2615 328 55 22 chr1 32313718 32314940 -164880492 - Lx8 LINE L1 0 7473 6208 4 831 1811 176 9 0 chr1 32314940 32315264 -164880168 - ORR1A2 LTR MaLR 0 327 1 4 831 2615 328 55 22 chr1 32315264 32315284 -164880148 - Lx8 LINE L1 -1266 6207 6189 4 831 36403 40 13 12 chr1 32316393 32318040 -164877392 - L1Md_T LINE L1 -2 6580 4914 4 831 225 183 46 77 chr1 32318040 32318105 -164877327 + RMER20A LTR ERVK 186 248 -268 4 831 36403 40 13 12 chr1 32318105 32321770 -164873662 - L1Md_T LINE L1 -2 4913 1203 4 831 8126 77 26 16 chr1 32321736 32322945 -164872487 - L1Md_Gf LINE L1 -5380 1142 1 4 831 795 269 107 36 chr1 32323002 32323557 -164871875 - Lx8 LINE L1 -433 5867 5231 4 831 3362 137 48 5 chr1 32323757 32324324 -164871108 - Lx LINE L1 -14 6640 6050 4 831 4823 157 19 93 chr1 32324324 32325083 -164870349 + L1_Mm LINE L1 3183 3920 -1963 4 831 1002 116 7 0 chr1 32325083 32325229 -164870203 + B1_Mus1 SINE Alu 1 147 -1 4 831 4823 157 19 93 chr1 32325229 32325618 -164869814 + L1_Mm LINE L1 3921 4246 -1637 4 831 435 336 53 56 chr1 32325651 32326137 -164869295 - Lx8 LINE L1 -1062 5081 4597 4 831 911 104 201 0 chr1 32326189 32326343 -164869089 + B2_Mm2 SINE B2 2 186 -9 4 831 1045 197 53 11 chr1 32326415 32326677 -164868755 - Lx9 LINE L1 -8 7636 7364 4 831 1680 215 153 68 chr1 32326682 32327620 -164867812 - RMER17B LTR ERVK -9 899 1 4 831 243 278 112 10 chr1 32327620 32327718 -164867714 - Lx9 LINE L1 -268 7376 7269 4 831 755 214 120 6 chr1 32327722 32327905 -164867527 + Lx9 LINE L1 7075 7278 -366 4 831 1863 113 53 41 chr1 32328020 32328348 -164867084 + Lx3A LINE L1 6636 6970 -11 4 831 329 62 21 0 chr1 32328348 32328396 -164867036 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 4 831 1863 113 53 41 chr1 32328396 32328408 -164867024 + Lx3A LINE L1 6971 6980 -1 4 831 1216 108 5 31 chr1 32328786 32328978 -164866454 - B2_Mm2 SINE B2 -8 187 1 4 831 7999 62 3 1 chr1 32329604 32331200 -164864232 - L1Md_F2 LINE L1 -12 6570 4974 4 831 914 172 11 0 chr1 32331259 32331503 -164863929 + GA-rich Low_complexity Low_complexity 1 246 0 4 831 207 0 0 0 chr1 32332721 32332744 -164862688 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 831 1051 105 23 0 chr1 32333433 32333604 -164861828 - L1_Mus3 LINE L1 -3 6635 6461 5 831 1180 69 0 0 chr1 32334874 32335019 -164860413 - B1_Mm SINE Alu -2 145 1 5 831 21 57 0 0 chr1 32335470 32335505 -164859927 + AT_rich Low_complexity Low_complexity 1 35 0 5 831 268 314 0 23 chr1 32336503 32336591 -164858841 - RMER20B LTR ERVK -37 590 505 5 831 402 317 16 39 chr1 32336576 32336704 -164858728 - RMER20B LTR ERVK -21 606 482 5 831 436 302 58 46 chr1 32336877 32337138 -164858294 - RMER20B LTR ERVK -208 419 163 5 831 408 217 0 0 chr1 32337584 32337676 -164857756 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 831 234 320 120 0 chr1 32338261 32338336 -164857096 + B1F1 SINE Alu 14 97 -52 5 831 228 333 0 14 chr1 32338760 32338830 -164856602 - ID4 SINE ID -3 80 12 5 831 922 128 49 7 chr1 32339342 32339484 -164855948 + B1_Mus1 SINE Alu 1 148 0 5 831 1147 94 18 0 chr1 32339518 32339757 -164855675 + L1_Mus3 LINE L1 6452 6638 0 5 831 729 310 92 41 chr1 32339974 32340290 -164855142 - MTEa LTR MaLR -40 339 8 5 831 7371 80 7 6 chr1 32340527 32341868 -164853564 + L1_Mus2 LINE L1 5224 6566 0 5 831 233 322 51 51 chr1 32341981 32342138 -164853294 + RMER16 LTR ERVK 119 275 -258 5 831 699 12 0 0 chr1 32342248 32342328 -164853104 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 831 324 0 0 0 chr1 32342328 32342363 -164853069 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 831 25 51 0 0 chr1 32342838 32342877 -164852555 + AT_rich Low_complexity Low_complexity 1 39 0 5 831 270 0 0 0 chr1 32342899 32342929 -164852503 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 831 363 315 17 35 chr1 32342944 32343059 -164852373 - B1F SINE Alu -34 115 3 5 831 31 68 0 0 chr1 32344776 32344835 -164850597 + AT_rich Low_complexity Low_complexity 1 59 0 5 831 972 261 64 24 chr1 32346901 32347113 -164848319 - Lx7 LINE L1 -1360 6336 6123 5 831 270 0 0 0 chr1 32347113 32347143 -164848289 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 831 972 261 64 24 chr1 32347143 32347260 -164848172 - Lx7 LINE L1 -1574 6122 5994 5 831 288 271 92 85 chr1 32347446 32347599 -164847833 + MER58B DNA MER1_type 182 335 -6 5 831 274 261 43 21 chr1 32348559 32348653 -164846779 + Charlie5 DNA MER1_type 21 116 -2508 5 831 26 0 0 0 chr1 32348771 32348797 -164846635 + AT_rich Low_complexity Low_complexity 1 26 0 5 831 212 224 41 0 chr1 32349837 32349886 -164845546 + GA-rich Low_complexity Low_complexity 4 54 0 5 831 358 88 29 0 chr1 32349886 32349954 -164845478 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 831 436 267 0 38 chr1 32350245 32350350 -164845082 + Lx5 LINE L1 6203 6303 -747 5 831 2387 261 17 6 chr1 32350367 32350895 -164844537 + Lx5 LINE L1 6475 7008 -42 5 831 1923 174 6 11 chr1 32351546 32351907 -164843525 - RLTR15 LTR ERVK 0 359 1 5 831 2074 99 22 25 chr1 32353258 32353580 -164841852 - L1Md_F2 LINE L1 -416 6166 5846 5 831 2883 93 2 7 chr1 32353580 32353991 -164841441 + L1Md_F2 LINE L1 6174 6582 0 5 831 423 0 0 0 chr1 32354027 32354074 -164841358 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 831 322 253 13 0 chr1 32354543 32354622 -164840810 - L2 LINE L2 -1359 2060 1981 5 831 761 298 42 0 chr1 32355758 32355949 -164839483 + B3 SINE B2 11 209 -7 5 831 432 0 0 0 chr1 32357429 32357477 -164837955 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 831 254 313 22 78 chr1 32358057 32358127 -164837305 + RSINE1 SINE B4 81 146 -19 5 831 216 0 0 0 chr1 32358127 32358151 -164837281 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 831 254 313 22 78 chr1 32358151 32358170 -164837262 + RSINE1 SINE B4 147 165 0 5 831 332 191 0 11 chr1 32358170 32358265 -164837167 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 831 195 42 0 0 chr1 32358903 32358927 -164836505 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 831 2225 170 83 23 chr1 32359143 32359613 -164835819 - Lx2B LINE L1 -5 6995 6498 5 831 232 331 61 8 chr1 32360535 32360666 -164834766 - L1M4 LINE L1 -586 5593 5456 5 831 321 311 130 44 chr1 32360799 32361115 -164834317 - L1M4 LINE L1 -838 5308 4966 5 831 1061 84 12 0 chr1 32361143 32361309 -164834123 - L1_Mus3 LINE L1 0 6638 6471 5 831 407 204 0 0 chr1 32361493 32361586 -164833846 - L1_Mur2 LINE L1 -1012 4865 4773 5 831 443 291 90 28 chr1 32361587 32361764 -164833668 - RLTR12B LTR ERVK -330 198 11 5 831 414 146 0 0 chr1 32361995 32362077 -164833355 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 831 214 167 0 0 chr1 32362377 32362419 -164833013 + T-rich Low_complexity Low_complexity 4 45 0 5 831 230 312 0 0 chr1 32362469 32362549 -164832883 - L1MEc LINE L1 -3249 3070 2991 5 831 336 272 93 26 chr1 32362789 32363057 -164832375 - L1MEc LINE L1 -4475 1925 1640 5 831 4393 79 2 15 chr1 32363168 32363771 -164831661 - L1Md_F2 LINE L1 0 6582 5988 5 831 3459 71 2 0 chr1 32363804 32364253 -164831179 - L1_Mus1 LINE L1 -5 6562 6113 5 831 26 0 0 0 chr1 32367411 32367437 -164827995 + AT_rich Low_complexity Low_complexity 1 26 0 5 831 615 236 159 15 chr1 32368053 32368332 -164827100 - Lx9 LINE L1 -179 7465 7147 5 831 28 48 0 0 chr1 32369257 32369299 -164826133 + AT_rich Low_complexity Low_complexity 1 42 0 5 831 3593 25 0 0 chr1 32369300 32369768 -164825664 - L1Md_A LINE L1 -579 6003 5536 5 831 5001 39 0 0 chr1 32369768 32370361 -164825071 + L1Md_A LINE L1 5986 6578 -4 5 831 1707 89 21 0 chr1 32370960 32371195 -164824237 - L1_Mus1 LINE L1 -1 6566 6327 5 831 1154 79 18 0 chr1 32371195 32371360 -164824072 + L1_Mus1 LINE L1 5911 6078 -489 5 831 3135 60 8 0 chr1 32371636 32372033 -164823399 + MTB LTR MaLR 1 400 0 5 831 239 79 0 26 chr1 32372158 32372197 -164823235 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 831 581 264 112 20 chr1 32372381 32372578 -164822854 - B3 SINE B2 0 216 2 5 831 980 97 15 0 chr1 32374152 32374286 -164821146 + B1_Mus2 SINE Alu 1 136 -11 5 831 265 257 71 0 chr1 32374301 32374371 -164821061 + B4A SINE B4 4 78 -214 5 103 14353 122 33 2 chr1 32374517 32376273 -164819159 + L1Md_F LINE L1 161 1969 -3914 5 832 189 74 0 0 chr1 32376273 32376300 -164819132 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 832 14353 87 7 1 chr1 32376300 32377622 -164817810 + L1Md_F LINE L1 1970 3303 -2580 5 832 10560 200 77 56 chr1 32377612 32381069 -164814363 - L1VL2 LINE L1 -1779 4098 584 5 832 1609 93 9 0 chr1 32381265 32381490 -164813942 + L1_Mus1 LINE L1 6341 6567 0 5 832 30 0 0 0 chr1 32381627 32381657 -164813775 + AT_rich Low_complexity Low_complexity 1 30 0 5 832 264 250 34 111 chr1 32381739 32381856 -164813576 - MTEb LTR MaLR -2 377 270 5 832 1017 267 92 13 chr1 32382443 32382747 -164812685 + ORR1D2 LTR MaLR 37 364 -6 5 832 28 0 0 0 chr1 32382791 32382819 -164812613 + AT_rich Low_complexity Low_complexity 1 28 0 5 832 3242 47 0 5 chr1 32383171 32383578 -164811854 - L1Md_F2 LINE L1 0 6582 6178 5 832 1186 57 6 0 chr1 32383578 32383735 -164811697 + L1Md_F2 LINE L1 5910 6067 -515 5 832 2718 173 70 41 chr1 32384926 32385486 -164809946 - Lx2B LINE L1 -4 6996 6421 5 832 458 372 0 35 chr1 32386006 32386209 -164809223 - MLT1A0 LTR MaLR -92 273 78 5 832 265 299 139 4 chr1 32386491 32386736 -164808696 + L1M4 LINE L1 3205 3482 -2664 5 832 755 309 63 4 chr1 32386828 32387081 -164808351 + B4A SINE B4 22 289 -3 5 832 2404 207 30 6 chr1 32387659 32388150 -164807282 + Lx LINE L1 6143 6645 -9 5 832 576 0 0 0 chr1 32388477 32388541 -164806891 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 832 22 56 0 0 chr1 32389440 32389476 -164805956 + AT_rich Low_complexity Low_complexity 1 36 0 5 832 487 327 41 14 chr1 32389680 32389880 -164805552 + B3A SINE B2 3 205 -11 5 832 3506 128 8 45 chr1 32390736 32391332 -164804100 - Lx LINE L1 -1 6653 6080 5 832 27 81 0 0 chr1 32392080 32392142 -164803290 + AT_rich Low_complexity Low_complexity 1 62 0 5 832 21 0 0 0 chr1 32392670 32392691 -164802741 + AT_rich Low_complexity Low_complexity 1 21 0 5 832 24 0 0 0 chr1 32392930 32392954 -164802478 + AT_rich Low_complexity Low_complexity 1 24 0 5 832 258 156 0 0 chr1 32392972 32393017 -164802415 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 832 366 23 0 0 chr1 32393710 32393753 -164801679 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 832 1067 211 16 20 chr1 32393916 32394162 -164801270 - MTC LTR MaLR 0 419 185 5 832 957 203 118 91 chr1 32394154 32394441 -164800991 - MTD LTR MaLR -124 295 1 5 832 252 86 0 0 chr1 32395155 32395190 -164800242 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 5 832 182 128 0 25 chr1 32395940 32395980 -164799452 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 832 745 65 63 24 chr1 32399289 32399415 -164796017 - L1Md_F2 LINE L1 -9 6573 6443 5 832 4721 70 85 4 chr1 32399415 32400322 -164795110 - L1Md_F2 LINE L1 -589 5993 4988 5 832 601 315 57 21 chr1 32400445 32400727 -164794705 + B4 SINE B4 1 292 0 5 832 285 98 0 0 chr1 32402602 32402643 -164792789 + (TAA)n Simple_repeat Simple_repeat 1 41 0 5 832 600 280 79 40 chr1 32403917 32404144 -164791288 - B4A SINE B4 -56 236 1 5 832 23 0 0 0 chr1 32405545 32405568 -164789864 + AT_rich Low_complexity Low_complexity 1 23 0 5 832 3864 141 21 13 chr1 32406262 32406885 -164788547 + Lx LINE L1 6024 6651 -3 5 832 24 0 0 0 chr1 32407208 32407232 -164788200 + AT_rich Low_complexity Low_complexity 1 24 0 5 832 373 308 29 9 chr1 32408352 32408457 -164786975 + RSINE1 SINE B4 36 142 -23 5 832 315 0 0 0 chr1 32408488 32408523 -164786909 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5 832 32 26 0 0 chr1 32408628 32408667 -164786765 + AT_rich Low_complexity Low_complexity 1 39 0 5 832 285 193 648 21 chr1 32410012 32410146 -164785286 - Lx9 LINE L1 -65 7579 7362 5 832 958 251 10 0 chr1 32410164 32410371 -164785061 + Lx9 LINE L1 7087 7295 -349 5 832 1121 33 33 7 chr1 32410928 32411080 -164784352 - L1Md_F3 LINE L1 -3 6581 6426 5 832 256 232 44 9 chr1 32411971 32412084 -164783348 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 832 357 181 15 29 chr1 32412096 32412233 -164783199 + (TA)n Simple_repeat Simple_repeat 2 136 0 5 832 2833 79 3 3 chr1 32412264 32412644 -164782788 + MTA_Mm LTR MaLR 16 395 -1 6 832 22 0 0 0 chr1 32412852 32412874 -164782558 + AT_rich Low_complexity Low_complexity 1 22 0 6 832 333 324 60 27 chr1 32412887 32412905 -164782527 - B3A SINE B2 0 198 181 6 832 675 148 63 0 chr1 32412905 32413047 -164782385 - Lx LINE L1 -8 6646 6496 6 832 344 265 58 36 chr1 32413047 32413177 -164782255 - B3 SINE B2 -18 180 46 6 832 3733 234 59 44 chr1 32413178 32415029 -164780403 - L1MA7 LINE L1 -460 5831 3655 6 832 423 0 0 0 chr1 32415055 32415102 -164780330 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 832 260 217 14 14 chr1 32415194 32415247 -164780185 + CT-rich Low_complexity Low_complexity 17 70 0 6 832 949 0 26 0 chr1 32415247 32415363 -164780069 + (TTCCC)n Simple_repeat Simple_repeat 2 120 0 6 832 247 276 19 9 chr1 32415363 32415419 -164780013 + polypyrimidine Low_complexity Low_complexity 4 60 0 6 832 664 259 86 6 chr1 32415553 32415728 -164779704 + MTD LTR MaLR 1 189 -230 6 832 886 118 12 0 chr1 32415735 32415896 -164779536 + (GA)n Simple_repeat Simple_repeat 2 164 0 6 832 476 294 92 0 chr1 32415897 32416060 -164779372 + MTD LTR MaLR 230 407 -12 6 832 819 261 71 36 chr1 32416112 32416477 -164778955 - L1MA7 LINE L1 -2314 3829 3452 6 832 2248 169 10 15 chr1 32417333 32417741 -164777691 + MTB_Mm LTR MaLR 2 407 0 6 832 594 0 0 0 chr1 32418006 32418072 -164777360 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 832 2853 201 24 24 chr1 32419139 32419680 -164775752 - RLTR20A LTR ERVK 0 541 1 6 832 372 119 0 0 chr1 32419808 32419867 -164775565 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 832 278 327 79 0 chr1 32419882 32419983 -164775449 + PB1D10 SINE Alu 1 109 -8 6 832 218 325 39 0 chr1 32419988 32420065 -164775367 + ID2 SINE ID 2 81 -2 6 832 378 0 0 0 chr1 32420066 32420108 -164775324 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 832 443 204 102 135 chr1 32420219 32420432 -164775000 - RLTR18 LTR ERVK -263 249 25 6 832 180 152 0 0 chr1 32420794 32420827 -164774605 + T-rich Low_complexity Low_complexity 1 33 0 6 832 1125 120 68 5 chr1 32422282 32422474 -164772958 - Lx2 LINE L1 -1055 5942 5739 6 832 2189 132 8 35 chr1 32422474 32422868 -164772564 + Lx2 LINE L1 6612 6994 -3 6 832 23 33 0 0 chr1 32422870 32422900 -164772532 + AT_rich Low_complexity Low_complexity 1 30 0 6 832 1128 89 0 0 chr1 32423934 32424114 -164771318 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 832 437 343 55 27 chr1 32424118 32424337 -164771095 - B4A SINE B4 0 292 68 6 832 461 274 20 33 chr1 32424352 32424503 -164770929 - Lx7 LINE L1 -844 6852 6704 6 832 627 254 16 8 chr1 32424992 32425119 -164770313 - B3 SINE B2 -88 128 1 6 832 3294 41 5 0 chr1 32425537 32425931 -164769501 - MTA_Mm LTR MaLR 0 396 1 6 832 399 41 0 0 chr1 32426340 32426389 -164769043 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6 832 37 39 0 0 chr1 32426493 32426544 -164768888 + AT_rich Low_complexity Low_complexity 1 51 0 6 832 649 55 45 0 chr1 32426560 32426670 -164768762 - L1Md_F3 LINE L1 0 6584 6470 6 832 1035 103 0 0 chr1 32426745 32426900 -164768532 + (TCTCCC)n Simple_repeat Simple_repeat 3 157 0 6 832 307 320 228 63 chr1 32426937 32427361 -164768071 - Lx8 LINE L1 -181 7292 6799 6 832 1550 240 34 20 chr1 32427361 32427718 -164767714 - ORR1D1 LTR MaLR 0 374 13 6 832 2682 149 23 23 chr1 32427723 32428197 -164767235 - Lx2B LINE L1 0 7000 6527 6 832 2496 228 29 23 chr1 32428224 32428852 -164766580 + RMER13A LTR ERVK 48 696 -212 6 832 1809 168 12 3 chr1 32428853 32429175 -164766257 - Lx2A1 LINE L1 -589 6419 6095 6 832 41111 6 0 0 chr1 32429212 32435569 -164759863 - L1Md_A LINE L1 0 6582 225 6 832 1085 83 7 0 chr1 32435696 32435840 -164759592 - B1_Mus2 SINE Alu -1 146 2 6 832 230 323 0 15 chr1 32435858 32435924 -164759508 - Lx8 LINE L1 -780 6693 6629 6 832 354 344 39 0 chr1 32435942 32436070 -164759362 - RSINE1 SINE B4 -22 143 11 6 832 260 308 13 0 chr1 32436218 32436296 -164759136 + Lx8 LINE L1 7047 7125 -348 6 832 312 27 0 0 chr1 32436456 32436493 -164758939 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 832 186 43 0 0 chr1 32437095 32437118 -164758314 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 832 740 281 33 30 chr1 32438364 32438643 -164756789 + Lx9 LINE L1 5760 6045 -1599 6 832 212 0 36 0 chr1 32438643 32438671 -164756761 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 832 740 292 34 53 chr1 32438671 32438927 -164756505 + Lx9 LINE L1 6046 6387 -1257 6 832 917 10 0 0 chr1 32438933 32439035 -164756397 - L1Md_F3 LINE L1 -126 6458 6357 6 832 879 50 0 0 chr1 32439036 32439157 -164756275 + L1Md_A LINE L1 6462 6582 0 6 832 2064 234 48 2 chr1 32439174 32439674 -164755758 + Lx9 LINE L1 6375 6897 -747 6 832 621 254 36 23 chr1 32439811 32440041 -164755391 - L1MA6 LINE L1 -301 5873 5638 6 832 725 337 30 64 chr1 32440143 32440441 -164754991 - B4A SINE B4 -2 290 3 6 832 3719 147 25 16 chr1 32440606 32441244 -164754188 - Lx2B LINE L1 -2 6998 6355 6 832 5265 104 38 4 chr1 32442741 32443531 -164751901 - L1_Mus4 LINE L1 0 6636 5820 6 832 303 217 0 98 chr1 32443781 32443873 -164751559 - L1MC4a LINE L1 -1197 6685 6603 6 832 201 108 0 0 chr1 32443874 32443911 -164751521 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 832 217 48 47 23 chr1 32445559 32445602 -164749830 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 832 4520 204 48 16 chr1 32447027 32448021 -164747411 + Lx5 LINE L1 5900 6925 -125 6 832 183 220 0 0 chr1 32448490 32448540 -164746892 + CT-rich Low_complexity Low_complexity 1 50 0 6 832 465 50 0 0 chr1 32448540 32448600 -164746832 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 832 3676 40 0 11 chr1 32448693 32449143 -164746289 - L1Md_F2 LINE L1 0 6582 6138 6 832 21 0 0 0 chr1 32449802 32449823 -164745609 + AT_rich Low_complexity Low_complexity 1 21 0 6 832 24 32 0 0 chr1 32450049 32450080 -164745352 + AT_rich Low_complexity Low_complexity 1 31 0 6 832 2066 282 94 46 chr1 32450114 32451065 -164744367 - ORR1E-int LTR MaLR -21 1559 1 6 832 314 281 125 62 chr1 32451106 32451125 -164744307 + B4A SINE B4 67 94 -198 6 832 643 189 37 8 chr1 32451125 32451258 -164744174 + B1_Mus2 SINE Alu 1 146 -1 6 832 717 342 24 35 chr1 32451262 32451601 -164743831 - ORR1E-int LTR MaLR -1035 335 1 6 832 674 314 28 127 chr1 32451604 32451965 -164743467 - ORR1E LTR MaLR -2 357 33 6 832 264 345 79 10 chr1 32452093 32452295 -164743137 - Lx8 LINE L1 -142 7331 7116 6 832 34 35 0 17 chr1 32452445 32452459 -164742973 + AT_rich Low_complexity Low_complexity 1 14 0 6 832 1036 124 0 0 chr1 32452459 32452604 -164742828 - B1_Mus1 SINE Alu -3 145 1 6 832 34 35 0 17 chr1 32452604 32452648 -164742784 + AT_rich Low_complexity Low_complexity 1 44 0 6 832 244 207 46 58 chr1 32455150 32455237 -164740195 + RSINE1 SINE B4 80 165 0 6 832 756 282 10 5 chr1 32455274 32455481 -164739951 + B3 SINE B2 5 212 -4 6 832 541 87 0 11 chr1 32455526 32455619 -164739813 - L1Md_F2 LINE L1 -1 6581 6490 6 832 3790 72 0 0 chr1 32455619 32456132 -164739300 + L1_Mm LINE L1 5050 5562 -321 6 832 388 308 52 15 chr1 32456304 32456439 -164738993 + B1F SINE Alu 1 140 -9 6 832 303 212 99 20 chr1 32456909 32457010 -164738422 + L1MCa LINE L1 1895 2003 -4505 6 832 933 116 17 0 chr1 32457085 32457258 -164738174 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 832 686 299 77 18 chr1 32457277 32457668 -164737764 - Lx9 LINE L1 -179 7465 7052 6 832 560 269 19 0 chr1 32457816 32457976 -164737456 - L1_Rod LINE L1 -353 5494 5332 6 832 186 43 0 0 chr1 32457997 32458020 -164737412 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 832 656 272 76 15 chr1 32458023 32458221 -164737211 - B3 SINE B2 0 216 7 6 832 664 240 125 27 chr1 32458228 32458524 -164736908 - L1_Rod LINE L1 -507 5340 5016 6 832 8087 5 0 5 chr1 32458528 32459477 -164735955 - L1Md_T LINE L1 0 6582 5639 6 832 1006 272 23 123 chr1 32459460 32460175 -164735257 - L1_Rod LINE L1 -818 5029 4403 6 832 740 301 104 74 chr1 32460717 32461083 -164734349 + MTEa LTR MaLR 1 377 -2 6 832 1564 193 93 133 chr1 32462068 32462145 -164733287 + MTC LTR MaLR 1 77 -344 6 832 3383 30 5 0 chr1 32462145 32462538 -164732894 + MTA_Mm LTR MaLR 2 396 0 6 832 8093 76 14 1 chr1 32462538 32463622 -164731810 + MTA_Mm-int LTR MaLR 1 1098 0 6 832 3277 41 8 2 chr1 32463622 32464016 -164731416 + MTA_Mm LTR MaLR 1 396 0 6 832 1564 193 93 133 chr1 32464016 32464094 -164731338 + MTC LTR MaLR 78 116 -305 6 832 849 115 65 0 chr1 32464094 32464233 -164731199 - B1_Mus1 SINE Alu 0 148 1 6 832 1564 193 93 133 chr1 32464233 32464504 -164730928 + MTC LTR MaLR 117 411 -10 6 832 2776 158 68 4 chr1 32465664 32466197 -164729235 + Lx4B LINE L1 6488 7054 -4 6 832 501 275 117 11 chr1 32467683 32467863 -164727569 + MTD LTR MaLR 1 199 -220 6 832 423 38 0 0 chr1 32467909 32467962 -164727470 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 832 452 243 10 0 chr1 32467972 32468075 -164727357 - B3A SINE B2 -85 113 10 6 832 459 0 0 0 chr1 32468108 32468159 -164727273 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 832 182 150 25 0 chr1 32468572 32468612 -164726820 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 832 27 49 0 0 chr1 32469423 32469464 -164725968 + AT_rich Low_complexity Low_complexity 1 41 0 6 832 579 268 53 19 chr1 32469705 32469914 -164725518 + B3 SINE B2 1 216 0 6 832 227 148 0 36 chr1 32470061 32470117 -164725315 + T-rich Low_complexity Low_complexity 3 56 0 6 832 1057 110 7 0 chr1 32470120 32470266 -164725166 - B1_Mus1 SINE Alu 0 148 2 6 832 608 306 91 19 chr1 32470639 32471179 -164724253 - Lx9 LINE L1 -1727 5917 5299 6 832 1606 85 0 64 chr1 32471971 32472235 -164723197 - L1_Mur1 LINE L1 -611 5275 5029 6 832 214 410 15 15 chr1 32473335 32473471 -164721961 + MIRb SINE MIR 75 210 -58 6 832 263 228 0 0 chr1 32473603 32473682 -164721750 - Lx9 LINE L1 -46 7598 7520 6 832 906 220 76 9 chr1 32473921 32474132 -164721300 - URR1B DNA MER1_type 0 225 1 6 832 1344 30 15 0 chr1 32474692 32474892 -164720540 + (TAGA)n Simple_repeat Simple_repeat 1 203 0 6 832 319 314 49 49 chr1 32476096 32476260 -164719172 + RSINE1 SINE B4 2 165 0 6 832 6227 70 23 1 chr1 32476451 32477314 -164718118 - L1_Mus2 LINE L1 0 6566 5685 7 832 540 0 0 0 chr1 32477703 32477763 -164717669 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 832 351 44 0 0 chr1 32477821 32477866 -164717566 + (A)n Simple_repeat Simple_repeat 1 45 0 7 832 208 139 0 0 chr1 32478945 32478981 -164716451 + (A)n Simple_repeat Simple_repeat 1 36 0 7 832 1848 92 120 3 chr1 32478981 32479297 -164716135 - Lx4A LINE L1 -1117 5941 5589 7 832 1045 192 43 17 chr1 32479299 32479532 -164715900 + Lx4A LINE L1 6817 7055 -3 7 832 23 33 0 0 chr1 32479539 32479569 -164715863 + AT_rich Low_complexity Low_complexity 1 30 0 7 832 278 100 40 0 chr1 32480277 32480327 -164715105 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 7 832 6921 115 15 4 chr1 32480644 32482311 -164713121 - L1_Mus3 LINE L1 -2 6636 4956 7 832 201 167 0 0 chr1 32482503 32482539 -164712893 + T-rich Low_complexity Low_complexity 3 38 0 7 832 309 161 18 0 chr1 32482752 32482808 -164712624 - ORR1C2 LTR MaLR -327 57 1 7 832 250 314 73 30 chr1 32483058 32483222 -164712210 - Lx8 LINE L1 -463 7010 6840 7 832 529 197 15 0 chr1 32483897 32484034 -164711398 + Lx9 LINE L1 7506 7644 0 7 832 23 33 0 0 chr1 32486285 32486315 -164709117 + AT_rich Low_complexity Low_complexity 1 30 0 7 832 304 300 0 0 chr1 32486318 32486398 -164709034 - ID4_ SINE ID 0 83 4 7 832 626 314 118 27 chr1 32486440 32486889 -164708543 + Lx8 LINE L1 6955 7444 -29 7 832 180 331 40 67 chr1 32487292 32487441 -164707991 + L2a LINE L2 3096 3240 -186 7 832 268 86 27 41 chr1 32487958 32488031 -164707401 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 7 832 504 0 0 0 chr1 32488140 32488196 -164707236 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 832 213 94 0 0 chr1 32490453 32490485 -164704947 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 832 1047 132 0 0 chr1 32490485 32490644 -164704788 - B2_Mm2 SINE B2 -33 162 4 7 832 834 274 28 14 chr1 32491758 32491969 -164703463 - B3 SINE B2 -1 215 2 7 832 193 246 14 55 chr1 32492337 32492410 -164703022 - MIRc SINE MIR -89 179 110 7 832 35831 23 3 0 chr1 32493166 32498688 -164696744 + L1Md_A LINE L1 47 5586 -297 7 832 8226 44 1 0 chr1 32498688 32499683 -164695749 + L1Md_A LINE L1 5587 6582 0 7 832 465 133 0 0 chr1 32499726 32499801 -164695631 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 832 956 136 0 0 chr1 32499801 32499948 -164695484 - B2_Mm2 SINE B2 -45 150 4 7 832 294 164 0 0 chr1 32500166 32500221 -164695211 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 832 315 135 19 0 chr1 32500221 32500273 -164695159 + HAL1-3A_ME LINE L1 1975 2027 -831 2 832 1235 84 0 6 chr1 32500284 32500463 -164694969 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 832 226 267 0 0 chr1 32502412 32502457 -164692975 + ID4_ SINE ID 25 69 -14 4 832 1367 50 0 11 chr1 32502802 32502983 -164692449 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 832 1120 237 110 7 chr1 32504628 32504909 -164690523 + Lx5 LINE L1 6741 7050 0 6 832 354 80 0 0 chr1 32505010 32505060 -164690372 + (TAA)n Simple_repeat Simple_repeat 2 51 0 7 12 4448 84 8 5 chr1 32505567 32506175 -164689257 - L1Md_F2 LINE L1 -32 6550 5941 8 833 2911 60 0 0 chr1 32506151 32506515 -164688917 + L1Md_F2 LINE L1 5606 5969 -613 8 833 4918 43 0 2 chr1 32506657 32507260 -164688172 + L1Md_F3 LINE L1 5969 6570 -14 8 833 558 184 228 0 chr1 32507654 32507790 -164687642 - Lx4B LINE L1 0 7058 6892 9 833 2568 164 14 16 chr1 32507786 32508232 -164687200 - Lx4B LINE L1 -309 6749 6305 9 833 3808 160 15 12 chr1 32508262 32508945 -164686487 + Lx4B LINE L1 5607 6291 -767 1 833 558 82 0 0 chr1 32508971 32509056 -164686376 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1 833 25 0 0 0 chr1 32510017 32510042 -164685390 + AT_rich Low_complexity Low_complexity 1 25 0 1 833 300 320 6 98 chr1 32511544 32511717 -164683715 + Lx9 LINE L1 4707 4863 -984 1 833 6208 53 14 5 chr1 32511773 32512571 -164682861 + L1Md_F2 LINE L1 5766 6570 -12 1 833 291 122 0 0 chr1 32512761 32512810 -164682622 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 833 4270 86 32 2 chr1 32513045 32513640 -164681792 - L1_Mus1 LINE L1 -2 6565 5953 1 833 271 221 111 40 chr1 32513640 32513739 -164681693 + Lx9 LINE L1 5072 5177 -670 1 833 2735 290 147 28 chr1 32513812 32515660 -164679772 + Lx9 LINE L1 5348 7456 -188 1 833 213 39 0 0 chr1 32515660 32515686 -164679746 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 833 2735 306 151 26 chr1 32515686 32515721 -164679711 + Lx9 LINE L1 7457 7505 -139 1 833 5010 80 15 58 chr1 32515753 32516547 -164678885 - L1_Mur1 LINE L1 -985 4901 4142 1 833 22 56 0 0 chr1 32516814 32516850 -164678582 + AT_rich Low_complexity Low_complexity 1 36 0 1 833 275 261 111 32 chr1 32517233 32517486 -164677946 - L1MEc LINE L1 -5238 1162 890 2 833 21 0 0 0 chr1 32517552 32517573 -164677859 + AT_rich Low_complexity Low_complexity 1 21 0 2 833 723 24 0 0 chr1 32518648 32518733 -164676699 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 833 228 329 63 0 chr1 32519601 32519680 -164675752 - B1F SINE Alu -65 84 1 2 833 198 222 0 0 chr1 32519816 32519870 -164675562 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 833 293 312 26 0 chr1 32519926 32520003 -164675429 - RSINE1 SINE B4 -82 83 5 2 833 4201 130 48 52 chr1 32521979 32522791 -164672641 + RMER17D2 LTR ERVK 1 809 0 2 833 362 211 9 0 chr1 32523635 32523749 -164671683 + (TG)n Simple_repeat Simple_repeat 1 115 0 2 833 223 400 0 0 chr1 32524435 32524510 -164670922 - ID4 SINE ID -3 80 6 2 833 277 281 186 10 chr1 32525013 32525110 -164670322 + B1_Mur1 SINE Alu 2 115 -34 2 833 229 259 0 18 chr1 32525069 32525124 -164670308 + B4 SINE B4 165 218 -74 3 833 635 25 12 0 chr1 32525921 32526002 -164669430 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 833 588 319 63 105 chr1 32527847 32528180 -164667252 - ORR1E LTR MaLR 0 359 41 3 833 22 35 0 0 chr1 32529252 32529281 -164666151 + AT_rich Low_complexity Low_complexity 1 29 0 3 833 273 343 27 72 chr1 32530100 32530323 -164665109 - RMER15 LTR ERVL -16 559 347 3 833 258 32 0 0 chr1 32531053 32531084 -164664348 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 833 28 48 0 0 chr1 32531937 32531979 -164663453 + AT_rich Low_complexity Low_complexity 1 42 0 3 833 1031 93 12 0 chr1 32532334 32532495 -164662937 + (GAAA)n Simple_repeat Simple_repeat 4 166 0 3 833 576 77 0 0 chr1 32532501 32532579 -164662853 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 3 833 3276 43 2 0 chr1 32532779 32533174 -164662258 + MTA_Mm LTR MaLR 1 396 0 3 833 24 53 0 0 chr1 32533945 32533983 -164661449 + AT_rich Low_complexity Low_complexity 1 38 0 4 833 341 291 181 83 chr1 32534017 32534258 -164661174 + B4 SINE B4 1 270 -22 4 833 414 0 0 0 chr1 32534258 32534304 -164661128 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 833 321 291 181 83 chr1 32534304 32534328 -164661104 + B4A SINE B4 271 292 0 4 833 1227 48 0 0 chr1 32534375 32534522 -164660910 - B1_Mus2 SINE Alu 0 147 1 4 833 7694 92 4 2 chr1 32534588 32535742 -164659690 - L1_Mus3 LINE L1 -8 6630 5474 4 833 2601 114 5 15 chr1 32535853 32536252 -164659180 - L1_Mus2 LINE L1 -1 6565 6171 4 833 2754 206 64 33 chr1 32536252 32537000 -164658432 - L1Md_F LINE L1 -5459 1060 290 4 833 316 294 82 74 chr1 32538924 32539181 -164656251 + ORR1E LTR MaLR 8 266 -93 4 833 243 0 0 0 chr1 32539248 32539275 -164656157 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 833 182 105 0 26 chr1 32539280 32539319 -164656113 + (CATA)n Simple_repeat Simple_repeat 1 38 0 4 833 369 300 115 0 chr1 32539341 32539471 -164655961 - Lx8 LINE L1 -299 7174 7030 5 833 369 0 0 0 chr1 32539754 32539795 -164655637 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 833 354 45 0 0 chr1 32539839 32539883 -164655549 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 833 570 312 39 22 chr1 32539951 32540131 -164655301 + B3A SINE B2 23 205 -11 5 833 209 156 0 43 chr1 32540865 32540912 -164654520 + T-rich Low_complexity Low_complexity 3 47 0 5 833 1867 226 58 10 chr1 32540913 32541324 -164654108 - Lx6 LINE L1 -599 6861 6431 5 833 633 283 44 29 chr1 32541322 32541595 -164653837 - Lx6 LINE L1 -7352 376 100 5 833 3460 15 5 0 chr1 32541958 32542352 -164653080 + MTA_Mm LTR MaLR 1 396 0 5 833 9065 35 4 1 chr1 32542352 32543447 -164651985 + MTA_Mm-int LTR MaLR 1 1098 0 5 833 3460 15 5 0 chr1 32543447 32543841 -164651591 + MTA_Mm LTR MaLR 1 396 0 5 833 29 28 0 0 chr1 32546616 32546652 -164648780 + AT_rich Low_complexity Low_complexity 1 36 0 5 833 21 36 0 0 chr1 32546687 32546715 -164648717 + AT_rich Low_complexity Low_complexity 1 28 0 5 833 3466 69 0 1 chr1 32546767 32547309 -164648123 - L1_Mus3 LINE L1 -623 6015 5475 5 833 4332 85 22 2 chr1 32547325 32547927 -164647505 + L1_Mus3 LINE L1 6020 6633 -5 5 833 408 40 0 0 chr1 32548511 32548561 -164646871 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 833 21 57 0 0 chr1 32549604 32549639 -164645793 + AT_rich Low_complexity Low_complexity 1 35 0 6 833 418 318 132 9 chr1 32550025 32550244 -164645188 - Lx8 LINE L1 -266 7207 6962 6 833 277 270 0 0 chr1 32550363 32550437 -164644995 + CT-rich Low_complexity Low_complexity 1 74 0 6 833 225 267 0 0 chr1 32552279 32552384 -164643048 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 833 271 359 54 47 chr1 32552753 32553031 -164642401 + Lx8 LINE L1 7024 7303 -170 6 833 363 263 50 10 chr1 32553349 32553449 -164641983 + PB1D10 SINE Alu 9 112 -5 6 833 864 312 67 11 chr1 32556177 32556624 -164638808 - Lx9 LINE L1 -106 7538 7067 6 833 1615 234 116 0 chr1 32556626 32556997 -164638435 - MTC LTR MaLR -7 414 1 6 833 1969 317 55 30 chr1 32556998 32558168 -164637264 - Lx9 LINE L1 -594 7050 5699 6 833 525 308 53 28 chr1 32558636 32558883 -164636549 - MLT1B LTR MaLR -79 311 59 6 833 278 26 0 25 chr1 32559072 32559112 -164636320 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 833 22 0 0 0 chr1 32559882 32559904 -164635528 + AT_rich Low_complexity Low_complexity 1 22 0 7 833 327 303 68 17 chr1 32560156 32560362 -164635070 + L1MA4 LINE L1 5761 5972 -1672 7 833 298 312 62 32 chr1 32561463 32561687 -164633745 - LTR37A LTR ERV1 0 468 249 7 833 7702 60 12 10 chr1 32561914 32563102 -164632330 - L1Md_F2 LINE L1 -1 6581 5392 7 833 1047 225 9 5 chr1 32564726 32564949 -164630483 + URR1B DNA MER1_type 1 224 -1 7 833 1197 57 80 6 chr1 32564995 32565170 -164630262 + L1_Mus2 LINE L1 6378 6565 -1 7 833 209 180 40 0 chr1 32565235 32565285 -164630147 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 833 381 22 0 0 chr1 32565286 32565332 -164630100 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 7 833 25 51 0 0 chr1 32565373 32565412 -164630020 + AT_rich Low_complexity Low_complexity 1 39 0 7 833 1638 186 203 75 chr1 32565493 32565658 -164629774 + RMER6D LTR ERVK 1 147 -573 8 833 1076 95 0 0 chr1 32565658 32565805 -164629627 - B1_Mus2 SINE Alu 0 147 1 8 833 1638 174 139 51 chr1 32565805 32566193 -164629239 + RMER6D LTR ERVK 148 657 -33 8 833 25 75 0 0 chr1 32566923 32566976 -164628456 + AT_rich Low_complexity Low_complexity 1 53 0 8 833 448 200 92 52 chr1 32566983 32567157 -164628275 - Lx7 LINE L1 -1 7695 7515 8 833 500 181 13 31 chr1 32567184 32567302 -164628130 - Lx7 LINE L1 -1249 6224 6103 8 833 266 342 38 0 chr1 32567528 32567607 -164627825 + ID2 SINE ID 1 82 -1 8 833 255 297 29 79 chr1 32567786 32567925 -164627507 - LTR58 LTR ERV1 -325 354 223 8 833 379 272 157 27 chr1 32568641 32568902 -164626530 - L1MB7 LINE L1 -14 6170 5876 8 833 504 300 69 16 chr1 32568946 32569246 -164626186 - L1MB7 LINE L1 -375 5803 5481 8 833 4853 92 14 46 chr1 32570021 32570964 -164624468 + L1VL2 LINE L1 284 1189 -2426 8 833 510 155 131 31 chr1 32570964 32571124 -164624308 + L1VL2 LINE L1 1651 1826 -1789 8 833 276 315 0 0 chr1 32571262 32571351 -164624081 - PB1D10 SINE Alu -2 115 27 8 833 396 0 0 0 chr1 32571665 32571709 -164623723 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 833 1709 65 0 5 chr1 32571912 32572127 -164623305 - L1_Mus1 LINE L1 -344 6223 6010 9 833 1621 98 0 9 chr1 32572127 32572389 -164623043 + L1_Mus1 LINE L1 6338 6567 0 9 833 948 199 182 0 chr1 32573005 32573241 -164622191 - RMER4B LTR ERVK 0 585 307 9 833 284 197 13 148 chr1 32573241 32573396 -164622036 + Lx9 LINE L1 7458 7591 -53 9 833 570 169 23 31 chr1 32573400 32573530 -164621902 - RLTR13D1 LTR ERVK -630 176 1 9 833 401 292 45 19 chr1 32573530 32573687 -164621745 - RLTR4_MM-int LTR ERV1 -2558 5043 4883 9 833 211 264 0 143 chr1 32573914 32573998 -164621434 - ID4 SINE ID -9 74 3 9 833 212 295 51 31 chr1 32574254 32574352 -164621080 - B4 SINE B4 -191 101 2 9 833 186 258 108 77 chr1 32575329 32575459 -164619973 - L3 LINE CR1 -3459 1030 897 9 833 375 17 50 17 chr1 32575646 32575706 -164619726 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 9 833 219 113 0 46 chr1 32575732 32575797 -164619635 + A-rich Low_complexity Low_complexity 5 66 0 1 833 348 252 112 63 chr1 32575798 32576132 -164619300 + L1MC4 LINE L1 705 1001 -5214 1 833 2321 161 95 60 chr1 32578718 32579234 -164616198 - RMER15 LTR ERVL -40 535 2 1 833 235 287 21 65 chr1 32579416 32579509 -164615923 - B4A SINE B4 -203 89 1 1 833 560 279 29 0 chr1 32579934 32580074 -164615358 - B1F1 SINE Alu -5 144 1 1 833 250 246 68 83 chr1 32580074 32580113 -164615319 - MT2B2 LTR ERVL -427 157 121 1 833 282 29 0 0 chr1 32580189 32580224 -164615208 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 833 332 291 78 21 chr1 32580290 32580483 -164614949 - L1M5 LINE L1 -2579 3567 3364 1 833 1806 138 73 30 chr1 32580592 32580921 -164614511 + ORR1B1 LTR MaLR 1 343 -51 1 833 864 261 14 19 chr1 32582075 32582282 -164613150 - B3 SINE B2 0 216 11 1 833 291 325 58 33 chr1 32582375 32582496 -164612936 + B3A SINE B2 3 126 -72 1 833 369 131 0 0 chr1 32582619 32582680 -164612752 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 833 230 136 23 0 chr1 32582976 32583020 -164612412 + CT-rich Low_complexity Low_complexity 3 47 0 1 833 443 282 80 4 chr1 32584236 32584376 -164611056 + ID_B1 SINE B4 82 231 -61 1 833 243 0 0 0 chr1 32584608 32584635 -164610797 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 1 833 337 20 20 20 chr1 32584641 32584692 -164610740 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 833 356 312 64 73 chr1 32585178 32585396 -164610036 - RLTR14 LTR ERV1 -2 380 165 1 833 11189 49 6 1 chr1 32585810 32587920 -164607512 - L1Md_F2 LINE L1 0 6582 4464 1 833 1302 228 4 4 chr1 32588637 32588897 -164606535 - ORR1B1 LTR MaLR -3 391 132 1 833 2877 92 15 2 chr1 32588897 32589291 -164606141 + MTB LTR MaLR 2 400 0 1 833 5607 160 97 27 chr1 32589296 32590463 -164604969 + MTB-int LTR MaLR 10 1258 0 1 833 1065 105 0 0 chr1 32590463 32590615 -164604817 + MTB LTR MaLR 1 152 -248 1 833 474 165 11 32 chr1 32590618 32590712 -164604720 + MTB LTR MaLR 316 407 0 1 833 728 154 0 35 chr1 32590713 32590854 -164604578 - ORR1B1 LTR MaLR -258 136 1 1 833 32 0 0 0 chr1 32591794 32591826 -164603606 + AT_rich Low_complexity Low_complexity 1 32 0 1 833 22 56 0 0 chr1 32592423 32592459 -164602973 + AT_rich Low_complexity Low_complexity 1 36 0 1 833 21 0 0 0 chr1 32593167 32593188 -164602244 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 4026 15 0 0 chr1 32595410 32595869 -164599563 + L1Md_A LINE L1 6124 6582 0 1 833 180 0 0 0 chr1 32596107 32596127 -164599305 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 833 252 0 0 0 chr1 32596887 32596915 -164598517 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 833 432 0 0 0 chr1 32596915 32596962 -164598470 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 833 589 306 146 8 chr1 32597269 32597523 -164597909 - B4A SINE B4 -2 290 2 1 833 210 71 0 0 chr1 32598634 32598662 -164596770 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 1 833 312 91 0 0 chr1 32599176 32599220 -164596212 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 833 1420 220 141 50 chr1 32599493 32599578 -164595854 - RLTR20C LTR ERVK -6 528 445 1 833 393 22 0 0 chr1 32599578 32599624 -164595808 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 833 1420 220 141 50 chr1 32599624 32600022 -164595410 - RLTR20C LTR ERVK -90 444 1 1 833 23 33 0 0 chr1 32601063 32601093 -164594339 + AT_rich Low_complexity Low_complexity 1 30 0 1 833 369 338 118 38 chr1 32601303 32601850 -164593582 + L1MCa LINE L1 3221 3507 -2811 1 833 212 59 29 0 chr1 32601850 32601884 -164593548 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 833 308 332 152 35 chr1 32601884 32601939 -164593493 + L1MCa LINE L1 1330 1399 -5109 1 833 225 256 21 53 chr1 32604432 32604527 -164590905 + L1MC4 LINE L1 7258 7349 -693 1 833 2486 137 76 62 chr1 32604563 32605062 -164590370 - RMER15 LTR ERVL -58 517 12 1 833 232 302 93 19 chr1 32605228 32605251 -164590181 - B3A SINE B2 -82 116 1 1 833 295 282 47 0 chr1 32605251 32605336 -164590096 - B4A SINE B4 -203 89 1 1 833 466 306 21 0 chr1 32606705 32606849 -164588583 - B1F1 SINE Alu -2 147 1 1 833 471 35 0 0 chr1 32606966 32607023 -164588409 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 833 304 323 62 10 chr1 32607089 32607283 -164588149 - L1M5 LINE L1 -2579 3567 3364 1 833 1906 134 91 53 chr1 32607392 32607784 -164587648 + MTB_Mm LTR MaLR 1 407 0 1 833 24 67 0 0 chr1 32608357 32608402 -164587030 + AT_rich Low_complexity Low_complexity 1 45 0 1 833 23 0 0 0 chr1 32608488 32608511 -164586921 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 186 261 0 0 chr1 32608614 32608660 -164586772 + MIRm SINE MIR 93 138 -138 1 833 708 167 79 49 chr1 32608920 32609084 -164586348 + URR1A DNA MER1_type 46 214 -12 1 833 301 261 75 50 chr1 32608955 32609116 -164586316 - CYRA11_Mm Unknown Y-chromosome -303 314 150 1 833 530 315 63 56 chr1 32609887 32610173 -164585259 - B4 SINE B4 -4 288 1 1 833 569 186 8 0 chr1 32613602 32613726 -164581706 + CT-rich Low_complexity Low_complexity 3 127 0 1 833 471 18 0 0 chr1 32613727 32613783 -164581649 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 833 772 234 59 50 chr1 32614334 32614602 -164580830 - RLTR24 LTR ERV1 -66 463 117 1 833 1742 162 25 28 chr1 32614633 32614956 -164580476 + ORR1A4 LTR MaLR 8 329 0 1 833 360 272 43 0 chr1 32614956 32615048 -164580384 - RLTR24 LTR ERV1 -412 117 22 1 833 1886 192 37 16 chr1 32615068 32615114 -164580318 - RLTR19C LTR ERVK -117 389 344 1 833 261 0 0 0 chr1 32615114 32615143 -164580289 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 833 1886 192 37 16 chr1 32615143 32615477 -164579955 - RLTR19C LTR ERVK -163 343 2 1 833 288 0 0 0 chr1 32615578 32615610 -164579822 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 833 39 22 0 0 chr1 32615623 32615669 -164579763 + AT_rich Low_complexity Low_complexity 1 46 0 1 833 23 0 0 0 chr1 32615952 32615975 -164579457 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 1525 95 17 4 chr1 32616886 32617119 -164578313 - L1_Mus3 LINE L1 -2 6636 6401 1 833 223 113 19 19 chr1 32617123 32617177 -164578255 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 833 207 0 0 0 chr1 32618789 32618812 -164576620 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 833 456 19 0 0 chr1 32618957 32619010 -164576422 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 833 209 189 56 19 chr1 32619023 32619077 -164576355 - MIR SINE MIR -121 141 86 1 833 1212 48 0 0 chr1 32619097 32619244 -164576188 + B1_Mm SINE Alu 1 147 0 1 833 711 276 22 13 chr1 32619506 32619730 -164575702 + Lx9 LINE L1 7056 7281 -363 1 833 7288 103 3 20 chr1 32619810 32620961 -164574471 - L1_Mus4 LINE L1 -8 6628 5492 1 833 2578 136 5 0 chr1 32620961 32621366 -164574066 + L1_Mus4 LINE L1 5067 5473 -410 1 833 577 203 67 62 chr1 32621340 32621496 -164573936 + Lx9 LINE L1 7316 7480 -164 1 833 233 98 24 0 chr1 32621496 32621537 -164573895 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 833 577 203 67 62 chr1 32621537 32621574 -164573858 + Lx9 LINE L1 7481 7510 -134 1 833 253 203 12 48 chr1 32621637 32621720 -164573712 + Lx9 LINE L1 7556 7635 -9 1 833 1943 151 33 28 chr1 32622763 32623125 -164572307 - MTB_Mm LTR MaLR -43 364 1 1 833 320 260 39 29 chr1 32623952 32624055 -164571377 + L1M5 LINE L1 5671 5774 -350 1 833 21 57 0 0 chr1 32624243 32624278 -164571154 + AT_rich Low_complexity Low_complexity 1 35 0 1 833 224 313 0 0 chr1 32624376 32624459 -164570973 + (TATG)n Simple_repeat Simple_repeat 1 83 0 1 833 29 0 0 0 chr1 32624700 32624729 -164570703 + AT_rich Low_complexity Low_complexity 1 29 0 1 833 3554 194 116 46 chr1 32625025 32625986 -164569446 - RLTR25B LTR ERVK 0 1028 1 1 833 435 19 0 0 chr1 32625986 32626038 -164569394 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 833 275 160 43 58 chr1 32626454 32626593 -164568839 + (TATAA)n Simple_repeat Simple_repeat 4 140 0 1 833 208 164 30 0 chr1 32626594 32626661 -164568771 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 833 21 0 0 0 chr1 32626691 32626712 -164568720 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 24 0 0 0 chr1 32627032 32627056 -164568376 + AT_rich Low_complexity Low_complexity 1 24 0 1 833 1723 180 123 5 chr1 32627067 32627441 -164567991 - MTC LTR MaLR -2 419 2 1 833 294 300 39 20 chr1 32628090 32628192 -164567240 + RSINE1 SINE B4 62 165 0 1 833 493 219 11 86 chr1 32628859 32629034 -164566398 + Lx2A1 LINE L1 6845 7006 -2 1 833 213 170 38 0 chr1 32630302 32630355 -164565077 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 833 759 235 112 31 chr1 32630665 32630924 -164564508 + Lx9 LINE L1 7066 7345 -299 1 833 22 70 0 0 chr1 32631343 32631386 -164564046 + AT_rich Low_complexity Low_complexity 1 43 0 1 833 21 0 0 0 chr1 32631446 32631467 -164563965 + AT_rich Low_complexity Low_complexity 1 21 0 1 833 1087 81 6 6 chr1 32631571 32631744 -164563688 - L1_Mus4 LINE L1 -3 6633 6461 1 833 594 313 50 0 chr1 32633369 32633551 -164561881 - RMER15 LTR ERVL -13 562 372 1 833 1291 164 28 0 chr1 32633724 32633938 -164561494 + URR1B DNA MER1_type 1 220 -5 1 833 520 334 124 29 chr1 32633944 32634394 -164561038 - Lx8 LINE L1 -365 7108 6616 1 833 1011 254 106 31 chr1 32634397 32634850 -164560582 - RMER15 LTR ERVL -2 573 27 1 833 22 56 0 0 chr1 32635097 32635133 -164560299 + AT_rich Low_complexity Low_complexity 1 36 0 1 834 207 139 0 53 chr1 32637900 32637938 -164557494 + polypurine Low_complexity Low_complexity 1 36 0 1 834 1297 45 17 0 chr1 32637940 32638116 -164557316 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 834 642 89 0 0 chr1 32638118 32638208 -164557224 + (GAAAA)n Simple_repeat Simple_repeat 5 94 0 1 834 544 270 31 42 chr1 32638208 32638401 -164557031 + B3A SINE B2 3 193 -5 1 834 734 253 30 34 chr1 32640283 32640516 -164554916 + Lx7 LINE L1 5375 5606 -274 1 834 339 130 0 0 chr1 32640517 32640571 -164554861 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 834 311 164 0 0 chr1 32640571 32640626 -164554806 + Lx7 LINE L1 5664 5718 -1978 1 834 386 299 95 26 chr1 32640627 32640816 -164554616 + Lx7 LINE L1 6989 7190 -506 1 834 23 54 0 0 chr1 32641185 32641222 -164554210 + AT_rich Low_complexity Low_complexity 1 37 0 1 834 308 84 22 67 chr1 32641748 32641837 -164553595 + (CAGAGA)n Simple_repeat Simple_repeat 3 87 0 1 834 373 356 23 9 chr1 32641853 32642071 -164553361 + L1MEc LINE L1 1652 1872 -4528 2 834 367 301 125 7 chr1 32642194 32642338 -164553094 + MER2B DNA MER2_type 170 330 -6 2 834 458 308 73 35 chr1 32642355 32642641 -164552791 + L1MEc LINE L1 1920 2216 -4184 2 834 1429 134 30 134 chr1 32642643 32642979 -164552453 - L1_Mur2 LINE L1 -1470 4407 4107 2 834 394 314 32 8 chr1 32643042 32643167 -164552265 + B1F SINE Alu 6 133 -16 2 834 267 328 122 11 chr1 32643393 32643655 -164551777 + L1ME1 LINE L1 5520 5810 -374 2 834 292 283 33 50 chr1 32644387 32644569 -164550863 + L1ME1 LINE L1 5791 5969 -210 2 834 1909 200 24 13 chr1 32644665 32645087 -164550345 - RLTR11A2 LTR ERVK -23 504 80 2 834 2345 93 120 0 chr1 32645087 32645453 -164549979 - IAPLTR2a LTR ERVK 0 411 2 2 834 431 220 29 218 chr1 32645453 32645499 -164549933 - RLTR11A2 LTR ERVK -366 87 77 2 834 2295 110 188 0 chr1 32645499 32645899 -164549533 - IAPLTR2_Mm LTR ERVK 0 475 1 2 834 508 123 25 0 chr1 32645899 32645980 -164549452 - RLTR11A2 LTR ERVK -444 83 1 2 834 320 139 0 12 chr1 32645991 32646071 -164549361 + T-rich Low_complexity Low_complexity 3 81 0 2 834 2396 300 48 28 chr1 32646073 32647038 -164548394 - Lx9 LINE L1 -407 7237 6254 2 834 369 162 0 0 chr1 32647045 32647113 -164548319 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 834 6288 25 0 1 chr1 32647164 32647895 -164547537 - L1Md_F2 LINE L1 -2 6580 5851 2 834 531 170 0 0 chr1 32647948 32648048 -164547384 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 834 239 314 81 0 chr1 32649125 32649211 -164546221 - MLT1C LTR MaLR -23 444 352 2 834 375 241 86 21 chr1 32650637 32650777 -164544655 - L1_Rod LINE L1 -82 5765 5617 2 834 423 306 65 0 chr1 32651140 32651264 -164544168 + RSINE1 SINE B4 11 142 -23 2 834 453 19 0 0 chr1 32651270 32651324 -164544108 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 834 401 317 87 0 chr1 32651454 32651637 -164543795 + MLT1B LTR MaLR 115 313 -77 2 834 226 286 16 16 chr1 32652408 32652472 -164542960 + RSINE1 SINE B4 92 155 -10 2 834 30 27 0 0 chr1 32652485 32652522 -164542910 + AT_rich Low_complexity Low_complexity 1 37 0 2 834 332 245 63 11 chr1 32652606 32652701 -164542731 - MER3 DNA MER1_type -58 151 52 2 834 24 23 0 43 chr1 32652984 32653009 -164542423 + AT_rich Low_complexity Low_complexity 1 25 0 2 834 983 103 29 0 chr1 32653009 32653145 -164542287 + B1_Mus1 SINE Alu 1 140 -8 2 834 378 0 0 0 chr1 32653145 32653187 -164542245 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 2 834 24 23 0 43 chr1 32653187 32653206 -164542226 + AT_rich Low_complexity Low_complexity 1 18 0 2 834 189 0 0 0 chr1 32653206 32653227 -164542205 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 834 325 229 39 47 chr1 32653418 32653557 -164541875 + L1M3 LINE L1 4455 4624 -1516 2 834 381 312 88 59 chr1 32653600 32653838 -164541594 + B4A SINE B4 42 286 -6 2 834 522 70 0 0 chr1 32653914 32653985 -164541447 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 834 384 373 48 72 chr1 32654008 32654201 -164541231 - B4A SINE B4 -9 283 96 2 834 4124 98 5 2 chr1 32654201 32654781 -164540651 - L1_Mus3 LINE L1 -5 6633 6052 2 834 384 373 48 72 chr1 32654781 32654838 -164540594 - B4A SINE B4 -197 95 39 2 834 2702 171 52 2 chr1 32654861 32654922 -164540510 - RLTR20C LTR ERVK -28 506 444 2 834 414 0 0 0 chr1 32654922 32654968 -164540464 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 834 2702 171 52 2 chr1 32654968 32655388 -164540044 - RLTR20C LTR ERVK -91 443 2 2 834 1913 148 100 30 chr1 32655390 32655829 -164539603 - MYSERV16_I-int LTR ERVK -2 2324 1855 2 834 21 57 0 0 chr1 32656458 32656493 -164538939 + AT_rich Low_complexity Low_complexity 1 35 0 2 834 351 65 0 0 chr1 32657039 32657085 -164538347 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2 834 2093 164 17 62 chr1 32657087 32657555 -164537877 - Lx3C LINE L1 -6 6970 6524 2 834 369 344 124 28 chr1 32657649 32657867 -164537565 + LTR40b LTR ERVL 190 428 -34 2 834 315 0 0 0 chr1 32657951 32657986 -164537446 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 834 7208 99 17 6 chr1 32658009 32659389 -164536043 - L1_Mus3 LINE L1 -12 6626 5229 2 834 1543 155 7 4 chr1 32659383 32659655 -164535777 + L1_Mus3 LINE L1 4967 5239 -644 2 834 308 279 98 0 chr1 32659680 32659863 -164535569 - L1MA7 LINE L1 -26 6265 6065 2 834 258 95 0 0 chr1 32659932 32659974 -164535458 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 834 828 252 0 34 chr1 32661310 32661515 -164533917 + B3A SINE B2 1 198 0 2 834 3656 100 11 2 chr1 32661870 32662403 -164533029 - L1_Mus3 LINE L1 -6 6632 6095 2 834 3944 141 23 55 chr1 32662663 32663397 -164532035 - Lx2B LINE L1 -1 6999 6288 2 834 594 39 0 0 chr1 32663397 32663474 -164531958 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 2 834 386 354 0 9 chr1 32663653 32663767 -164531665 + RSINE1 SINE B4 3 115 -50 2 834 405 39 0 0 chr1 32663783 32663834 -164531598 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 834 321 289 12 0 chr1 32663914 32663997 -164531435 - BC1_Mm scRNA scRNA -68 84 1 2 834 6077 154 34 7 chr1 32664164 32665277 -164530155 - L1_Mur1 LINE L1 -1940 3946 2803 2 834 294 50 0 0 chr1 32665277 32665317 -164530115 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 834 6077 154 34 7 chr1 32665317 32665358 -164530074 - L1_Mur1 LINE L1 -3084 2802 2762 2 834 961 47 0 0 chr1 32665367 32665494 -164529938 + L1Md_F2 LINE L1 6442 6568 -14 2 834 3939 119 37 14 chr1 32665509 32666137 -164529295 + Lx LINE L1 5998 6639 -15 2 834 212 59 29 0 chr1 32666140 32666174 -164529258 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 834 22 56 0 0 chr1 32667344 32667380 -164528052 + AT_rich Low_complexity Low_complexity 1 36 0 2 834 30 27 0 0 chr1 32667475 32667512 -164527920 + AT_rich Low_complexity Low_complexity 1 37 0 2 834 310 314 67 124 chr1 32667812 32667835 -164527597 - B2_Mm2 SINE B2 -13 182 162 2 834 504 32 0 0 chr1 32667835 32667897 -164527535 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 834 576 325 89 0 chr1 32667897 32668066 -164527366 - B3 SINE B2 -32 184 1 2 834 315 0 0 0 chr1 32668406 32668441 -164526991 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 834 1131 58 0 0 chr1 32668441 32668579 -164526853 - B1_Mus2 SINE Alu -8 139 2 2 834 238 291 91 0 chr1 32669156 32669266 -164526166 - Lx8 LINE L1 0 7473 7354 2 834 397 326 53 21 chr1 32669274 32669462 -164525970 + Lx8 LINE L1 7122 7315 -158 2 834 184 293 85 17 chr1 32669495 32669554 -164525878 + L2a LINE L2 3364 3426 0 2 834 3131 47 35 47 chr1 32671083 32671511 -164523921 - L1_Mus2 LINE L1 0 6566 6144 2 834 479 99 0 0 chr1 32671511 32671582 -164523850 + L1_Mus2 LINE L1 5917 5987 -579 2 834 1109 88 0 0 chr1 32672610 32672757 -164522675 + B1_Mus1 SINE Alu 2 148 0 2 834 252 0 0 0 chr1 32672757 32672785 -164522647 + (A)n Simple_repeat Simple_repeat 1 28 0 2 834 1896 186 48 37 chr1 32672931 32673305 -164522127 - ORR1C1 LTR MaLR 0 378 1 2 834 214 260 27 27 chr1 32673932 32674007 -164521425 + B1_Mur3 SINE Alu 38 112 -37 2 834 25 0 0 0 chr1 32674492 32674517 -164520915 + AT_rich Low_complexity Low_complexity 1 25 0 2 834 393 22 0 0 chr1 32674751 32674797 -164520635 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 834 378 268 110 71 chr1 32675206 32675389 -164520043 - B3A SINE B2 -13 203 20 2 834 706 134 8 8 chr1 32675557 32675685 -164519747 + (TA)n Simple_repeat Simple_repeat 1 128 0 2 834 474 18 0 0 chr1 32675672 32675727 -164519705 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 834 313 319 26 56 chr1 32676637 32676903 -164518529 - L1ME1 LINE L1 -3 6176 5919 2 834 848 235 69 44 chr1 32676936 32677301 -164518131 - Lx2B LINE L1 -56 6944 6322 2 834 575 326 46 42 chr1 32677508 32677684 -164517748 - L1MA4A LINE L1 -364 5939 5763 2 834 1761 181 49 111 chr1 32677684 32678133 -164517299 - MTC LTR MaLR 0 421 1 2 834 575 307 52 77 chr1 32678133 32678415 -164517017 - L1MA4A LINE L1 -538 5762 5479 2 834 1320 105 5 0 chr1 32678415 32678606 -164516826 - B2_Mm1a SINE B2 -1 192 1 2 834 538 307 52 77 chr1 32678606 32678726 -164516706 - L1MA4A LINE L1 -822 5478 5372 2 834 307 57 0 54 chr1 32678726 32678782 -164516650 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2 834 538 295 153 23 chr1 32678782 32679111 -164516321 - L1MA4A LINE L1 -929 5371 5004 2 834 2119 150 71 0 chr1 32679111 32679477 -164515955 - ORR1B1 LTR MaLR -2 392 1 2 834 300 316 118 37 chr1 32679477 32679605 -164515827 - L1MA4A LINE L1 -1140 5003 4876 2 834 1976 21 13 8 chr1 32679663 32679901 -164515531 + L1Md_F3 LINE L1 6343 6581 -3 2 834 429 308 35 61 chr1 32680125 32680353 -164515079 - Lx8 LINE L1 0 7473 7252 2 834 1183 311 38 34 chr1 32680350 32680850 -164514582 - Lx8 LINE L1 -708 6765 6264 2 834 328 189 0 0 chr1 32681048 32681101 -164514331 + B1F1 SINE Alu 76 128 -21 2 834 1074 76 14 7 chr1 32681133 32681279 -164514153 + B1_Mus2 SINE Alu 1 147 0 2 834 1173 194 4 41 chr1 32681512 32681663 -164513769 + RMER5 LTR ERV1 249 391 -143 2 834 1336 105 11 0 chr1 32681663 32681854 -164513578 + B2_Mm1t SINE B2 1 193 0 2 834 1173 194 4 41 chr1 32681854 32681944 -164513488 + RMER5 LTR ERV1 392 481 -53 2 834 297 51 0 0 chr1 32682445 32682484 -164512948 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 834 21 36 0 0 chr1 32684591 32684619 -164510813 + AT_rich Low_complexity Low_complexity 1 28 0 2 834 887 145 72 6 chr1 32685777 32685957 -164509475 - Lx LINE L1 -4 6650 6459 2 834 223 71 48 0 chr1 32685994 32686036 -164509396 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 834 327 345 188 15 chr1 32686037 32686354 -164509078 - MLT1G3 LTR MaLR -24 567 204 2 834 1191 271 92 31 chr1 32687164 32687609 -164507823 + Lx8 LINE L1 7000 7471 -2 2 834 924 275 30 40 chr1 32687698 32688042 -164507390 + Lx9 LINE L1 5538 5917 -1727 2 834 1241 316 68 14 chr1 32688158 32688675 -164506757 + Lx9 LINE L1 6330 6874 -770 2 834 304 348 88 29 chr1 32689058 32689275 -164506157 + B4A SINE B4 36 273 -19 2 834 379 52 0 33 chr1 32689319 32689379 -164506053 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 834 182 195 25 25 chr1 32689405 32689484 -164505948 + (CATA)n Simple_repeat Simple_repeat 4 82 0 2 834 400 335 105 25 chr1 32689556 32689832 -164505600 - MER46C DNA MER2_type -31 307 10 2 834 1597 52 19 0 chr1 32690120 32690330 -164505102 - L1Md_F3 LINE L1 -14 6570 6357 2 834 181 294 118 0 chr1 32690355 32690440 -164504992 + MER5A DNA MER1_type 11 105 -84 2 834 1518 282 41 32 chr1 32690904 32691477 -164503955 - Lx6 LINE L1 -26 7434 6479 2 834 4625 129 23 27 chr1 32692858 32693670 -164501762 - RMER17D2 LTR ERVK 0 809 1 3 834 316 20 38 38 chr1 32693787 32693840 -164501592 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 834 243 61 0 0 chr1 32695625 32695658 -164499774 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 834 656 361 103 67 chr1 32696259 32696843 -164498589 - MLT1J-int LTR MaLR -6 1381 777 3 834 1111 82 0 7 chr1 32697354 32697501 -164497931 + B1_Mus2 SINE Alu 1 146 -1 3 834 482 349 58 6 chr1 32697974 32698147 -164497285 - B3A SINE B2 -15 183 2 3 834 464 364 129 30 chr1 32699329 32700088 -164495344 - L2 LINE L2 -338 3081 2248 3 834 686 91 8 0 chr1 32700662 32700783 -164494649 + (TAGA)n Simple_repeat Simple_repeat 4 125 0 3 834 1336 175 82 121 chr1 32703212 32703437 -164491995 + ORR1D1 LTR MaLR 1 182 -192 3 834 207 0 0 0 chr1 32703437 32703460 -164491972 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 834 1336 175 82 121 chr1 32703460 32703623 -164491809 + ORR1D1 LTR MaLR 183 374 0 3 834 1014 300 90 17 chr1 32704282 32704836 -164490596 + L1_Mur3 LINE L1 5304 5865 -15 3 834 273 57 0 0 chr1 32704857 32704892 -164490540 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 834 342 0 0 0 chr1 32705399 32705437 -164489995 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 834 1144 75 0 0 chr1 32705660 32705807 -164489625 + B1_Mm SINE Alu 1 147 0 3 834 219 250 33 0 chr1 32705807 32705889 -164489543 + A-rich Low_complexity Low_complexity 11 95 0 3 834 247 337 58 0 chr1 32706091 32706177 -164489255 - PB1 SINE Alu -15 112 22 3 834 219 185 19 0 chr1 32706342 32706396 -164489036 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 834 295 316 79 109 chr1 32707479 32707744 -164487688 + B4A SINE B4 10 274 -18 3 834 413 252 62 18 chr1 32708096 32708209 -164487223 + B1F1 SINE Alu 12 129 -20 3 834 3584 158 8 16 chr1 32709716 32710352 -164485080 - Lx2 LINE L1 0 6997 6367 3 834 26 50 0 0 chr1 32711502 32711542 -164483890 + AT_rich Low_complexity Low_complexity 1 40 0 3 834 611 227 23 0 chr1 32712620 32712752 -164482680 - ORR1D2 LTR MaLR -232 138 4 3 834 1637 59 14 5 chr1 32713479 32713699 -164481733 + L1Md_F3 LINE L1 6363 6584 0 3 834 236 97 0 0 chr1 32713699 32713730 -164481702 + L1_Mus1 LINE L1 6380 6410 -157 3 834 557 204 7 0 chr1 32717488 32717630 -164477802 + (TA)n Simple_repeat Simple_repeat 2 144 0 3 834 626 240 18 55 chr1 32719013 32719176 -164476256 + B3A SINE B2 1 157 -41 3 834 180 0 0 0 chr1 32719206 32719226 -164476206 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 834 306 200 19 28 chr1 32720071 32720179 -164475253 + GA-rich Low_complexity Low_complexity 5 111 0 3 834 1759 255 154 19 chr1 32720693 32721496 -164473936 - L1MA6 LINE L1 -14 6286 5375 3 834 591 62 0 0 chr1 32721546 32721626 -164473806 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 834 295 176 41 21 chr1 32721643 32721734 -164473698 - B3 SINE B2 -69 129 33 3 834 33814 35 0 0 chr1 32722509 32727910 -164467522 + L1Md_T LINE L1 92 5589 -297 3 834 9025 6 0 0 chr1 32727910 32728930 -164466502 + L1Md_T LINE L1 5590 6585 0 3 834 37 23 0 0 chr1 32729093 32729137 -164466295 + AT_rich Low_complexity Low_complexity 1 44 0 3 834 3149 164 7 27 chr1 32729165 32729616 -164465816 + RLTR20A LTR ERVK 1 442 -99 3 834 585 52 0 0 chr1 32729616 32729693 -164465739 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 834 3149 164 7 27 chr1 32729693 32729791 -164465641 + RLTR20A LTR ERVK 443 539 -2 3 834 701 216 129 27 chr1 32730941 32731127 -164464305 + B3 SINE B2 1 205 -11 3 834 552 238 20 51 chr1 32731355 32731550 -164463882 - Lx6 LINE L1 -6 7454 7266 3 834 4569 114 36 12 chr1 32731561 32732557 -164462875 - L1_Mus4 LINE L1 -512 6124 5105 3 834 3392 124 15 2 chr1 32732557 32733080 -164462352 + L1_Mus4 LINE L1 6107 6636 0 3 834 4569 138 6 25 chr1 32733080 32733104 -164462328 - L1_Mus4 LINE L1 -779 5104 5086 3 834 734 291 32 26 chr1 32733091 32733339 -164462093 - Lx6 LINE L1 -207 7253 7030 3 834 321 26 0 0 chr1 32733339 32733377 -164462055 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 834 543 341 32 60 chr1 32733377 32733409 -164462023 - Lx6 LINE L1 -419 6631 6601 3 834 583 301 66 0 chr1 32734092 32734258 -164461174 + MTD LTR MaLR 1 177 -242 3 834 7374 29 17 1 chr1 32734258 32735316 -164460116 + L1Md_F3 LINE L1 5615 6584 0 3 834 827 194 110 2 chr1 32735316 32735513 -164459919 + MTD LTR MaLR 203 398 -21 3 834 502 241 52 0 chr1 32735627 32735743 -164459689 - RSINE1 SINE B4 -39 126 5 3 834 30 0 0 0 chr1 32735752 32735782 -164459650 + AT_rich Low_complexity Low_complexity 1 30 0 3 834 542 63 13 0 chr1 32736445 32736524 -164458908 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 834 7321 63 7 0 chr1 32736692 32737749 -164457683 - L1_Mus2 LINE L1 -1 6565 5499 3 834 277 360 35 26 chr1 32737967 32738081 -164457351 + PB1D10 SINE Alu 1 115 -2 3 834 493 327 73 34 chr1 32738107 32738313 -164457119 + B3 SINE B2 1 214 -2 3 834 573 331 46 0 chr1 32738323 32738474 -164456958 + RSINE1 SINE B4 6 163 -2 3 834 210 311 126 58 chr1 32738474 32738497 -164456935 + B2_Mm1a SINE B2 5 190 -3 3 834 33 25 0 0 chr1 32739177 32739217 -164456215 + AT_rich Low_complexity Low_complexity 1 40 0 3 834 1208 48 0 0 chr1 32739918 32740063 -164455369 + B1_Mus2 SINE Alu 1 145 -2 3 834 220 274 123 0 chr1 32741081 32741154 -164454278 + BC1_Mm scRNA scRNA 16 97 -55 3 834 554 310 14 7 chr1 32742425 32742568 -164452864 + B3A SINE B2 2 145 -53 3 834 2596 98 41 5 chr1 32742593 32742982 -164452450 - RLTR9D LTR ERVK 0 403 1 3 834 25 51 0 0 chr1 32743013 32743052 -164452380 + AT_rich Low_complexity Low_complexity 1 39 0 3 834 221 116 23 23 chr1 32743501 32743545 -164451887 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 834 1192 287 89 6 chr1 32743691 32744027 -164451405 - ORR1D2 LTR MaLR 0 370 7 3 834 645 275 15 51 chr1 32745103 32745309 -164450123 + MTD LTR MaLR 4 218 -201 3 834 302 346 112 28 chr1 32746388 32746709 -164448723 + LTR33A_ LTR ERVL 3 350 -181 3 834 1793 42 0 0 chr1 32747022 32747239 -164448193 - L1Md_F2 LINE L1 -12 6570 6354 3 834 1272 60 6 0 chr1 32747240 32747408 -164448024 + L1Md_F2 LINE L1 5954 6122 -460 3 834 2145 0 4 0 chr1 32748416 32748657 -164446775 - L1Md_T LINE L1 0 6582 6341 3 834 557 232 0 42 chr1 32749211 32749355 -164446077 + B1_Mur2 SINE Alu 12 149 0 3 834 296 241 17 0 chr1 32749710 32749768 -164445664 + L2b LINE L2 3317 3375 0 3 834 264 364 44 29 chr1 32750285 32750489 -164444943 + MIR SINE MIR 22 228 -34 3 834 206 318 35 12 chr1 32751056 32751142 -164444290 - L2a LINE L2 -5 3421 3334 3 834 857 233 10 37 chr1 32751793 32752015 -164443417 - MTC LTR MaLR -15 406 200 3 834 1040 124 6 0 chr1 32752015 32752184 -164443248 + (TTCTC)n Simple_repeat Simple_repeat 3 172 0 3 834 500 100 0 12 chr1 32752184 32752265 -164443167 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 3 834 7019 113 7 2 chr1 32752266 32753447 -164441985 - L1_Mus4 LINE L1 0 6636 5450 3 834 279 0 0 0 chr1 32753447 32753478 -164441954 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 834 3558 144 16 7 chr1 32753478 32753668 -164441764 - L1_Mus4 LINE L1 -434 5449 5262 3 834 1058 188 17 0 chr1 32753668 32753844 -164441588 - MTC LTR MaLR -203 218 40 3 834 581 202 103 16 chr1 32753882 32754008 -164441424 + B1_Mus1 SINE Alu 10 146 -2 3 834 423 0 0 0 chr1 32754611 32754658 -164440774 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 834 263 354 68 7 chr1 32754662 32754810 -164440622 - Lx9 LINE L1 -187 7286 7130 3 834 1068 286 69 56 chr1 32754806 32755240 -164440192 - Lx9 LINE L1 -485 7159 6629 3 834 242 270 135 0 chr1 32755240 32755329 -164440103 - B1_Mus2 SINE Alu -35 112 12 3 834 1068 286 69 56 chr1 32755329 32755645 -164439787 - Lx9 LINE L1 -485 6628 6240 3 834 217 281 46 58 chr1 32756800 32756887 -164438545 - MIRb SINE MIR -103 165 80 3 834 754 257 48 5 chr1 32757063 32757270 -164438162 + B3 SINE B2 1 216 0 3 834 209 329 0 0 chr1 32757617 32757702 -164437730 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 834 2771 28 0 0 chr1 32759047 32759369 -164436063 + RLTRETN_Mm LTR ERVK 1 322 0 3 834 232 314 24 16 chr1 32761355 32761481 -164433951 + (CA)n Simple_repeat Simple_repeat 2 128 0 3 834 237 291 10 131 chr1 32761601 32761700 -164433732 - MER20 DNA MER1_type -132 87 1 3 834 22 0 0 0 chr1 32762437 32762459 -164432973 + AT_rich Low_complexity Low_complexity 1 22 0 3 834 941 234 67 42 chr1 32762546 32762831 -164432601 - B4A SINE B4 0 292 1 3 834 5764 122 63 2 chr1 32763673 32764598 -164430834 + Lx4A LINE L1 6075 7055 -3 3 834 402 21 0 0 chr1 32765060 32765107 -164430325 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 834 342 0 0 0 chr1 32765784 32765822 -164429610 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 3 834 716 86 9 0 chr1 32765825 32765930 -164429502 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 3 834 26 0 0 0 chr1 32766129 32766155 -164429277 + AT_rich Low_complexity Low_complexity 1 26 0 3 834 1030 147 19 53 chr1 32766425 32766633 -164428799 + Lx LINE L1 6448 6648 -6 3 834 6805 97 27 2 chr1 32766868 32767965 -164427467 - L1_Mus4 LINE L1 0 6636 5515 3 835 180 77 0 0 chr1 32768544 32768570 -164426862 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 3 835 236 306 13 40 chr1 32770992 32771067 -164424365 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 3 835 198 71 0 0 chr1 32771527 32771555 -164423877 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 835 3390 205 50 134 chr1 32771573 32772086 -164423346 - RLTR21 LTR ERVK -264 1308 745 3 835 2484 87 29 49 chr1 32772086 32772471 -164422961 - L1_Mus2 LINE L1 0 6566 6190 3 835 3390 202 36 150 chr1 32772471 32773194 -164422238 - RLTR21 LTR ERVK -703 869 261 3 835 3054 34 0 0 chr1 32773194 32773574 -164421858 + L1Md_F2 LINE L1 5198 5577 -306 3 835 7839 53 5 4 chr1 32773577 32774563 -164420869 + L1Md_F2 LINE L1 5587 6573 -9 3 835 388 200 12 0 chr1 32774563 32774643 -164420789 - RLTR21 LTR ERVK -1298 274 194 3 835 212 349 52 99 chr1 32775202 32775229 -164420203 + B3A SINE B2 2 20 -178 3 835 998 251 28 146 chr1 32775229 32775653 -164419779 - MTE2a LTR MaLR -3 376 3 3 835 661 253 19 68 chr1 32775653 32775786 -164419646 + RSINE1 SINE B4 22 155 -10 3 835 212 349 52 99 chr1 32775786 32775816 -164419616 + B3A SINE B2 21 183 -15 3 835 2034 135 157 19 chr1 32776628 32776997 -164418435 + RLTR9B2 LTR ERVK 1 420 0 4 835 245 338 14 0 chr1 32777091 32777162 -164418270 - LTR16B LTR ERVL 0 463 392 4 835 2685 196 23 13 chr1 32777221 32777742 -164417690 - RLTR17 LTR ERVK 0 692 167 4 835 887 207 39 41 chr1 32777709 32778009 -164417423 - RLTR17 LTR ERVK -162 283 1 4 835 216 0 0 0 chr1 32778036 32778060 -164417372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 835 252 369 66 26 chr1 32779347 32779770 -164415662 - HERV16-int LTR ERVL -3790 1206 767 4 835 902 314 103 101 chr1 32779898 32780334 -164415098 - MLT1E1A LTR MaLR 0 680 124 4 835 1928 183 15 58 chr1 32780747 32781142 -164414290 - ORR1C1 LTR MaLR 0 378 1 4 835 296 333 105 6 chr1 32781495 32781676 -164413756 - LTR16B1 LTR ERVL -1 479 281 4 835 2974 225 69 31 chr1 32781855 32782087 -164413345 - RLTR40 LTR ERVK -19 798 575 4 835 606 93 0 0 chr1 32782087 32782173 -164413259 + (CCTG)n Simple_repeat Simple_repeat 1 86 0 4 835 2974 225 69 31 chr1 32782173 32782707 -164412725 - RLTR40 LTR ERVK -243 574 3 4 835 207 0 0 0 chr1 32783309 32783332 -164412100 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 835 798 315 55 5 chr1 32783483 32783703 -164411729 + 7SK RNA RNA 1 231 -100 4 835 653 338 0 36 chr1 32783835 32784001 -164411431 + RSINE1 SINE B4 6 165 0 4 835 38 0 0 0 chr1 32784006 32784044 -164411388 + AT_rich Low_complexity Low_complexity 1 38 0 4 835 1708 83 12 4 chr1 32784635 32784876 -164410556 + L1_Mus2 LINE L1 6323 6565 -1 4 835 1065 108 0 0 chr1 32784927 32785085 -164410347 + (GAA)n Simple_repeat Simple_repeat 3 160 0 4 835 3501 25 0 0 chr1 32785278 32785674 -164409758 - MTA_Mm LTR MaLR 0 396 1 4 835 32 43 0 0 chr1 32785760 32785806 -164409626 + AT_rich Low_complexity Low_complexity 1 46 0 4 835 215 379 9 19 chr1 32786274 32786379 -164409053 + B4A SINE B4 64 167 -125 4 835 318 303 10 18 chr1 32786301 32786419 -164409013 + PB1D7 SINE Alu 6 123 -26 4 835 361 97 28 0 chr1 32786875 32786947 -164408485 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 4 835 291 185 102 85 chr1 32787429 32787547 -164407885 + L1MA5A LINE L1 6172 6291 -6 4 835 6769 37 20 1 chr1 32787603 32788431 -164407001 + L1Md_F2 LINE L1 5739 6582 0 4 835 262 289 43 98 chr1 32788472 32788564 -164406868 + B3 SINE B2 109 195 -21 4 835 220 183 42 21 chr1 32789643 32789738 -164405694 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 835 340 275 18 0 chr1 32790096 32790205 -164405227 + Lx7 LINE L1 6978 7088 -608 4 835 1248 189 75 20 chr1 32790207 32790461 -164404971 + RMER20B LTR ERVK 1 268 -359 4 835 432 230 74 67 chr1 32790441 32790590 -164404842 + RMER20B LTR ERVK 449 598 -29 4 835 3091 30 6 3 chr1 32790603 32790966 -164404466 + L1Md_F2 LINE L1 6200 6563 -19 4 835 297 0 0 0 chr1 32790969 32791002 -164404430 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 835 255 350 68 0 chr1 32791023 32791126 -164404306 + Lx8 LINE L1 7135 7244 -229 4 835 2478 101 3 8 chr1 32791126 32791494 -164403938 + L1_Mus4 LINE L1 6271 6636 0 4 835 438 159 0 0 chr1 32791681 32791769 -164403663 + GA-rich Low_complexity Low_complexity 3 90 0 4 835 198 0 0 0 chr1 32791769 32791791 -164403641 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 4 835 270 0 0 0 chr1 32792023 32792053 -164403379 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 835 397 283 25 82 chr1 32792560 32792718 -164402714 + B1F SINE Alu 1 149 0 4 835 283 321 90 68 chr1 32792722 32792899 -164402533 + ORR1E LTR MaLR 8 188 -171 4 835 261 57 0 0 chr1 32793168 32793203 -164402229 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 835 1563 144 44 13 chr1 32794218 32794554 -164400878 - MTC LTR MaLR -8 413 1 4 835 573 55 0 0 chr1 32795119 32795192 -164400240 + (GGA)n Simple_repeat Simple_repeat 3 75 0 4 835 348 24 0 0 chr1 32795582 32795623 -164399809 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 835 676 222 7 7 chr1 32795623 32795759 -164399673 - B1_Mur3 SINE Alu -12 137 2 4 835 292 316 0 0 chr1 32796153 32796229 -164399203 + PB1D10 SINE Alu 34 109 -8 4 835 310 276 21 11 chr1 32796235 32796330 -164399102 + BC1_Mm scRNA scRNA 2 97 -55 4 835 846 126 0 0 chr1 32796331 32796466 -164398966 + (GGAA)n Simple_repeat Simple_repeat 1 135 0 4 835 1086 73 0 0 chr1 32796466 32796602 -164398830 + B1_Mm SINE Alu 3 138 -9 4 835 713 12 0 11 chr1 32796620 32796707 -164398725 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 4 835 325 252 86 9 chr1 32797667 32797783 -164397649 - MLT1K LTR MaLR -2 593 469 4 835 234 0 0 0 chr1 32799949 32799975 -164395457 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 835 260 301 81 28 chr1 32800353 32800637 -164394795 + L1MD LINE L1 4303 4601 -1545 4 835 403 300 115 21 chr1 32800698 32800964 -164394468 + L1MD LINE L1 4657 4944 -1202 4 835 238 308 75 29 chr1 32800979 32801153 -164394279 + L1MD LINE L1 5694 5875 -569 4 835 932 244 156 39 chr1 32801281 32801999 -164393433 + L1MA4 LINE L1 5101 5899 -401 4 835 228 226 0 0 chr1 32803535 32803597 -164391835 + CT-rich Low_complexity Low_complexity 2 63 0 4 835 245 262 11 56 chr1 32804138 32804227 -164391205 + B1F SINE Alu 65 149 0 4 835 216 0 0 0 chr1 32804227 32804251 -164391181 + (A)n Simple_repeat Simple_repeat 1 24 0 4 835 241 286 0 0 chr1 32804855 32804911 -164390521 + G-rich Low_complexity Low_complexity 4 59 0 4 835 607 84 21 0 chr1 32804921 32805016 -164390416 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 835 185 279 0 95 chr1 32805237 32805332 -164390100 + L2 LINE L2 139 224 -3195 4 835 602 279 18 71 chr1 32806296 32806520 -164388912 - B3 SINE B2 -4 212 1 4 835 261 295 0 64 chr1 32806623 32806717 -164388715 + RLTR25A LTR ERVK 501 588 -515 4 835 630 121 0 0 chr1 32806648 32806739 -164388693 + B1_Mus2 SINE Alu 46 136 -11 4 835 270 0 0 0 chr1 32806739 32806769 -164388663 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 835 4108 94 10 17 chr1 32806928 32807512 -164387920 - L1_Mus2 LINE L1 -1 6565 5986 4 835 1960 68 0 0 chr1 32807512 32807777 -164387655 - L1Md_F2 LINE L1 -928 4955 4691 4 835 5005 54 0 0 chr1 32807776 32808424 -164387008 + L1Md_F2 LINE L1 4938 5585 -298 4 835 8312 41 0 2 chr1 32808425 32809423 -164386009 + L1Md_F2 LINE L1 5587 6582 0 4 835 3541 69 3 9 chr1 32809423 32810058 -164385374 - L1_Mus2 LINE L1 -569 5997 5365 4 835 977 62 0 0 chr1 32810655 32810783 -164384649 - B1_Mus1 SINE Alu 0 148 21 4 835 5718 70 1 0 chr1 32810784 32811509 -164383923 + L1_Mus1 LINE L1 5841 6566 -1 4 835 23 68 0 0 chr1 32811524 32811568 -164383864 + AT_rich Low_complexity Low_complexity 1 44 0 4 835 8041 30 0 1 chr1 32811568 32813248 -164382184 - L1Md_T LINE L1 -2 6580 4902 4 835 20914 22 1 0 chr1 32813243 32815840 -164379592 + L1Md_T LINE L1 2160 4758 -1125 4 835 422 133 119 42 chr1 32815850 32815968 -164379464 - Lx7 LINE L1 0 7696 7570 4 835 2149 243 90 38 chr1 32815970 32816753 -164378679 - L1_Mur3 LINE L1 -4491 1389 575 4 835 277 284 45 27 chr1 32817806 32817918 -164377514 + PB1D10 SINE Alu 1 114 -3 4 835 225 0 0 0 chr1 32817959 32817984 -164377448 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 4 835 1815 295 114 64 chr1 32818023 32819102 -164376330 - Lx8 LINE L1 -9 7464 6332 4 835 366 333 0 0 chr1 32819111 32819210 -164376222 + B1_Mur2 SINE Alu 11 109 -40 4 835 692 290 90 28 chr1 32819230 32819652 -164375780 + L1_Mur3 LINE L1 3380 3827 -2053 4 835 782 277 55 26 chr1 32819824 32820132 -164375300 + L1_Rod LINE L1 5489 5805 -42 4 835 936 128 10 4 chr1 32820138 32820318 -164375114 - RMER19A LTR ERVK -451 160 1 4 835 451 274 102 0 chr1 32820419 32820576 -164374856 + RMER1C Other Other 463 635 -707 4 835 246 339 0 0 chr1 32822103 32822165 -164373267 - B2_Mm2 SINE B2 -133 62 1 4 835 654 326 8 13 chr1 32822177 32822416 -164373016 - Lx8 LINE L1 -687 6786 6549 4 835 373 210 0 0 chr1 32822434 32822515 -164372917 - Lx8 LINE L1 -1021 6452 6372 4 835 408 351 0 9 chr1 32822725 32822840 -164372592 + B3A SINE B2 1 114 -84 4 835 183 129 0 0 chr1 32822853 32822884 -164372548 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 835 333 0 0 0 chr1 32822885 32822922 -164372510 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 835 760 283 23 9 chr1 32823680 32823901 -164371531 + RMER15 LTR ERVL 352 575 0 4 835 1020 299 79 26 chr1 32824263 32824641 -164370791 + MER67D LTR ERV1 1 398 -116 4 835 1606 245 74 2 chr1 32825068 32825513 -164369919 + MER31A LTR ERV1 1 477 -8 4 835 604 209 59 53 chr1 32825507 32825694 -164369738 - B2_Mm2 SINE B2 -7 188 1 4 835 371 183 67 0 chr1 32827010 32827114 -164368318 - MER67C LTR ERV1 -3 708 598 4 835 253 270 48 75 chr1 32827187 32827455 -164367977 - RMER17D2 LTR ERVK -237 572 312 4 835 1110 128 44 16 chr1 32828285 32828468 -164366964 - B2_Mm2 SINE B2 -7 188 1 4 835 2509 259 78 60 chr1 32828620 32828737 -164366695 - RMER1C Other Other 0 1342 1230 4 835 294 29 0 0 chr1 32828737 32828772 -164366660 + (CAA)n Simple_repeat Simple_repeat 1 35 0 4 835 2509 259 78 60 chr1 32828772 32829564 -164365868 - RMER1C Other Other -113 1229 419 4 835 4271 21 0 0 chr1 32829678 32830160 -164365272 - LTRIS_Mm LTR ERV1 0 482 1 4 835 1771 182 39 56 chr1 32830295 32830756 -164364676 - Lx2B LINE L1 -13 6987 6535 4 835 400 273 109 55 chr1 32830753 32831009 -164364423 + Lx8 LINE L1 7186 7455 -18 4 835 542 294 107 27 chr1 32831280 32832121 -164363311 + L1MA4 LINE L1 4993 5898 -402 4 835 687 212 144 20 chr1 32832124 32832326 -164363106 + MTD LTR MaLR 193 419 0 4 835 525 348 21 50 chr1 32833571 32833810 -164361622 + B4A SINE B4 41 272 -20 4 835 1412 210 113 6 chr1 32833902 32834237 -164361195 + ORR1D1 LTR MaLR 4 374 0 4 835 242 333 38 84 chr1 32834245 32834376 -164361056 + MER5B DNA MER1_type 47 171 -7 4 835 406 252 110 7 chr1 32835006 32835142 -164360290 - MER5A1 DNA MER1_type -10 156 7 4 835 688 279 14 0 chr1 32835905 32836052 -164359380 + B1_Mur2 SINE Alu 1 149 0 4 835 10325 25 0 0 chr1 32836174 32837383 -164358049 + L1Md_T LINE L1 4378 5586 -297 5 835 8976 6 0 0 chr1 32837383 32838379 -164357053 + L1Md_T LINE L1 5587 6582 0 5 835 1260 266 75 6 chr1 32838455 32838788 -164356644 - MTD LTR MaLR -19 400 45 5 835 367 273 106 37 chr1 32838872 32839033 -164356399 - MTE-int LTR MaLR -357 1152 979 5 835 1054 351 91 49 chr1 32839200 32839978 -164355454 - MTE-int LTR MaLR -694 886 76 5 835 360 0 0 0 chr1 32840119 32840159 -164355273 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 835 1281 58 0 0 chr1 32840160 32840385 -164355047 + (TAGA)n Simple_repeat Simple_repeat 1 225 0 5 835 1068 167 13 67 chr1 32840749 32840973 -164354459 + URR1B DNA MER1_type 13 224 -1 5 835 313 245 54 9 chr1 32841179 32841290 -164354142 - Charlie1a DNA MER1_type -17 1438 1323 5 835 596 271 154 20 chr1 32841422 32841720 -164353712 - Charlie1a DNA MER1_type -159 1296 959 5 835 304 202 22 50 chr1 32841871 32842053 -164353379 + GA-rich Low_complexity Low_complexity 1 177 0 5 835 313 349 79 20 chr1 32842069 32842221 -164353211 + HAL1-3A_ME LINE L1 2284 2444 -414 5 835 316 257 27 54 chr1 32842227 32842375 -164353057 + GA-rich Low_complexity Low_complexity 4 147 0 5 835 220 72 0 67 chr1 32845669 32845714 -164349718 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 5 835 635 279 99 20 chr1 32845715 32845916 -164349516 - ID_B1 SINE B4 -6 218 2 5 835 957 319 117 109 chr1 32845983 32846359 -164349073 + MTD LTR MaLR 1 404 -15 5 835 1302 154 22 22 chr1 32846992 32847218 -164348214 - URR1A DNA MER1_type 0 226 1 5 835 3515 63 2 5 chr1 32847377 32847804 -164347628 - L1_Mus2 LINE L1 -143 6423 5998 5 835 917 64 0 91 chr1 32847804 32847958 -164347474 + L1_Mus2 LINE L1 6427 6566 0 5 835 3515 63 2 5 chr1 32847958 32847979 -164347453 - L1_Mus2 LINE L1 -569 5997 5978 5 835 669 56 0 0 chr1 32847986 32848076 -164347356 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 835 912 258 27 108 chr1 32848285 32848380 -164347052 + MTD LTR MaLR 6 79 -340 5 835 895 159 7 14 chr1 32848380 32848527 -164346905 + B1_Mus2 SINE Alu 1 146 -1 5 835 912 244 57 96 chr1 32848527 32848833 -164346599 + MTD LTR MaLR 80 312 -107 5 835 6708 85 67 17 chr1 32848877 32850035 -164345397 - L1_Mus3 LINE L1 -6 6632 5417 5 835 8811 108 19 5 chr1 32850028 32851298 -164344134 - L1VL1 LINE L1 -1243 2455 1165 5 835 2538 89 78 24 chr1 32851298 32851749 -164343683 - IAPLTR2_Mm LTR ERVK 0 475 1 5 835 8811 165 34 45 chr1 32851749 32852931 -164342501 - L1VL1 LINE L1 -2534 1164 52 5 835 611 202 54 94 chr1 32852936 32853160 -164342272 + MTD-int LTR MaLR 1044 1258 0 5 835 1880 229 26 18 chr1 32853171 32853558 -164341874 + MTD LTR MaLR 22 411 -8 5 835 6281 127 23 12 chr1 32854451 32855974 -164339458 + L1VL4 LINE L1 355 1893 -1666 5 835 11888 125 19 11 chr1 32855958 32858728 -164336704 + L1_Mus3 LINE L1 3840 6634 -4 5 835 21 57 0 0 chr1 32859257 32859292 -164336140 + AT_rich Low_complexity Low_complexity 1 35 0 5 835 417 86 0 0 chr1 32859714 32859772 -164335660 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 835 468 0 0 0 chr1 32859772 32859823 -164335609 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 835 1430 186 93 48 chr1 32860068 32860424 -164335008 + ORR1D1 LTR MaLR 3 374 0 5 835 23 68 0 0 chr1 32860479 32860523 -164334909 + AT_rich Low_complexity Low_complexity 1 44 0 5 835 235 167 19 0 chr1 32860834 32860888 -164334544 + T-rich Low_complexity Low_complexity 3 57 0 5 835 917 214 164 35 chr1 32861136 32861368 -164334064 + MTEa LTR MaLR 118 379 0 5 835 22 35 0 0 chr1 32862758 32862787 -164332645 + AT_rich Low_complexity Low_complexity 1 29 0 5 835 363 23 0 0 chr1 32863532 32863576 -164331856 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 835 426 341 72 67 chr1 32863616 32864018 -164331414 - MLT2C2 LTR ERVL -56 408 5 5 835 191 359 0 0 chr1 32865368 32865421 -164330011 + L2b LINE L2 3308 3360 -15 5 835 252 122 0 0 chr1 32865579 32865620 -164329812 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 5 835 289 250 13 38 chr1 32865625 32865704 -164329728 - ID4 SINE ID -2 81 5 5 835 187 31 62 0 chr1 32866275 32866307 -164329125 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 835 1432 232 60 40 chr1 32866624 32866974 -164328458 + ORR1D2 LTR MaLR 1 357 -13 5 835 394 250 44 22 chr1 32867128 32867263 -164328169 + B1F SINE Alu 1 138 -11 5 835 381 372 113 19 chr1 32867504 32867814 -164327618 + Kanga1 DNA Tc2 94 432 -1313 5 835 308 374 29 53 chr1 32867845 32867985 -164327447 + Kanga1 DNA Tc2 1259 1403 -342 5 835 662 334 104 3 chr1 32867985 32868286 -164327146 + ORR1D2 LTR MaLR 1 336 -34 5 835 198 0 0 0 chr1 32868286 32868308 -164327124 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5 835 662 334 104 3 chr1 32868308 32868342 -164327090 + ORR1D2 LTR MaLR 337 370 0 5 835 308 374 29 53 chr1 32868342 32868407 -164327025 + Kanga1 DNA Tc2 1404 1459 -286 5 835 251 300 0 0 chr1 32868418 32868488 -164326944 - MER5A DNA MER1_type -119 70 1 5 835 7136 71 28 4 chr1 32868492 32868560 -164326872 - L1Md_F2 LINE L1 -12 6570 6505 5 835 183 80 0 0 chr1 32868560 32868585 -164326847 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 5 835 7136 73 19 3 chr1 32868585 32869944 -164325488 - L1Md_F2 LINE L1 -78 6504 5119 5 835 740 130 32 0 chr1 32869943 32870066 -164325366 - L1Md_F2 LINE L1 -1469 4414 4288 5 835 2479 89 3 8 chr1 32870066 32870419 -164325013 - L1Md_F2 LINE L1 -2033 3850 3500 5 835 31557 77 4 0 chr1 32870417 32875559 -164319873 - L1Md_F LINE L1 -366 5517 358 5 835 261 0 0 0 chr1 32876348 32876377 -164319055 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 835 1850 180 19 79 chr1 32876432 32876800 -164318632 + ORR1B1 LTR MaLR 41 386 -8 5 835 809 105 110 7 chr1 32876800 32876954 -164318478 + L1_Mus4 LINE L1 6445 6614 -22 5 835 210 91 0 0 chr1 32876955 32876988 -164318444 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 835 460 251 2 49 chr1 32878101 32878277 -164317155 + MT2B LTR ERVL 1 134 -467 5 835 432 130 0 0 chr1 32878323 32878392 -164317040 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5 835 358 105 52 17 chr1 32878394 32878452 -164316980 + HAL1-3A_ME LINE L1 1975 2034 -824 5 835 309 163 0 0 chr1 32878478 32878527 -164316905 + MT2B LTR ERVL 552 600 -1 5 835 396 0 0 0 chr1 32878674 32878718 -164316714 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 835 539 29 0 14 chr1 32878718 32878787 -164316645 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 835 309 294 239 0 chr1 32879869 32879978 -164315454 - RSINE1 SINE B4 -27 138 4 5 835 290 338 0 0 chr1 32880326 32880397 -164315035 + RSINE1 SINE B4 86 156 -9 5 835 276 100 0 0 chr1 32880405 32880445 -164314987 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 835 576 332 83 80 chr1 32881294 32881680 -164313752 + MER47B DNA MER2_type 31 417 -1 5 835 306 0 0 0 chr1 32881742 32881776 -164313656 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 835 1559 194 91 17 chr1 32882305 32882657 -164312775 + ORR1C1 LTR MaLR 1 378 0 5 835 504 0 0 0 chr1 32883327 32883383 -164312049 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 835 254 308 105 32 chr1 32883735 32883859 -164311573 + MER5A1 DNA MER1_type 31 163 -3 5 835 203 125 0 24 chr1 32884772 32884813 -164310619 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 835 242 313 120 42 chr1 32886437 32886646 -164308786 + L2c LINE L2 3183 3421 -5 5 835 628 250 66 11 chr1 32889180 32889362 -164306070 + MER45B DNA Tip100 375 566 -474 5 835 925 79 22 0 chr1 32889760 32889899 -164305533 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 5 835 433 323 121 52 chr1 32890443 32890538 -164304894 + L1MDa LINE L1 19 132 -6501 5 835 180 0 0 0 chr1 32890538 32890558 -164304874 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 835 433 323 121 52 chr1 32890558 32890808 -164304624 + L1MDa LINE L1 133 388 -6245 5 835 4075 139 38 46 chr1 32891337 32892138 -164303294 - RMER17D2 LTR ERVK -15 794 1 5 835 324 0 0 0 chr1 32892272 32892308 -164303124 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 835 236 208 19 0 chr1 32892321 32892374 -164303058 + L1MDa LINE L1 1799 1852 -4781 5 835 719 260 88 21 chr1 32892540 32892823 -164302609 - Lx8 LINE L1 -228 7245 6944 5 835 3211 200 58 8 chr1 32892823 32893482 -164301950 - RLTR17 LTR ERVK 0 692 1 5 835 932 270 79 31 chr1 32893483 32893828 -164301604 - Lx8 LINE L1 -636 7008 6621 5 835 304 156 15 15 chr1 32893886 32893951 -164301481 + L1MD1 LINE L1 6069 6133 -109 5 835 231 244 65 152 chr1 32893961 32894053 -164301379 + PB1D10 SINE Alu 2 85 -32 5 835 465 19 0 0 chr1 32894066 32894120 -164301312 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 5 835 189 107 0 0 chr1 32894130 32894158 -164301274 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 835 306 107 0 0 chr1 32894158 32894214 -164301218 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 835 375 335 71 18 chr1 32894628 32894798 -164300634 - MIR3 SINE MIR -24 184 6 5 835 189 0 0 0 chr1 32895287 32895308 -164300124 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 835 215 351 0 38 chr1 32895518 32895651 -164299781 + CT-rich Low_complexity Low_complexity 1 128 0 5 835 281 164 32 32 chr1 32895713 32895776 -164299656 - MT2B LTR ERVL -384 149 87 5 835 308 225 14 0 chr1 32895752 32895823 -164299609 - MT2B LTR ERVL -468 133 62 5 835 295 211 93 53 chr1 32895921 32895996 -164299436 - B3A SINE B2 -134 82 5 5 835 26 50 0 0 chr1 32896145 32896185 -164299247 + AT_rich Low_complexity Low_complexity 1 40 0 5 835 183 146 0 0 chr1 32896209 32896250 -164299182 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 835 402 340 0 0 chr1 32896383 32896486 -164298946 + PB1D7 SINE Alu 6 108 -12 5 835 789 58 0 0 chr1 32896510 32896613 -164298819 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 5 835 372 43 0 0 chr1 32896931 32896977 -164298455 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 835 208 277 0 15 chr1 32896977 32897043 -164298389 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 835 1562 170 112 22 chr1 32897097 32897410 -164298022 + ORR1B1 LTR MaLR 41 381 -13 5 835 239 239 0 0 chr1 32897418 32897485 -164297947 + (TATAA)n Simple_repeat Simple_repeat 4 70 0 5 835 536 106 0 12 chr1 32897501 32897587 -164297845 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 835 1566 181 123 26 chr1 32897675 32898016 -164297416 + ORR1D1 LTR MaLR 1 374 0 5 835 23 33 0 0 chr1 32898262 32898292 -164297140 + AT_rich Low_complexity Low_complexity 1 30 0 5 835 239 287 55 9 chr1 32898642 32898751 -164296681 - L1MB3 LINE L1 -54 6129 6016 5 835 250 299 30 0 chr1 32898916 32899003 -164296429 - ID4 SINE ID -60 92 4 5 836 2133 118 42 0 chr1 32899342 32899655 -164295777 + ORR1A3 LTR MaLR 1 326 0 5 836 8724 176 28 11 chr1 32899655 32901418 -164294014 + ORR1A3-int LTR MaLR 1 1792 0 5 836 2093 109 0 28 chr1 32901418 32901739 -164293693 + ORR1A3 LTR MaLR 1 312 -14 5 836 359 321 61 0 chr1 32901874 32902070 -164293362 - L1M3 LINE L1 -2148 3992 3785 5 836 478 265 87 76 chr1 32902083 32902240 -164293192 + B3A SINE B2 1 160 -38 5 836 360 0 0 0 chr1 32902240 32902280 -164293152 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 836 332 265 87 76 chr1 32902280 32902306 -164293126 + B2_Mm2 SINE B2 158 185 -10 5 836 280 249 175 12 chr1 32902859 32903111 -164292321 - L1M3 LINE L1 -2457 3686 3394 5 836 326 311 93 31 chr1 32903462 32903751 -164291681 - L1M3 LINE L1 -3180 2960 2654 5 836 993 326 81 24 chr1 32904001 32904334 -164291098 + LTR16B1 LTR ERVL 23 374 -106 6 836 1182 68 0 0 chr1 32904428 32904575 -164290857 + B1_Mus2 SINE Alu 1 147 0 6 836 270 245 81 81 chr1 32905053 32905096 -164290336 - MER91B DNA Tip100 -62 128 84 6 836 582 15 0 0 chr1 32905096 32905163 -164290269 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 836 270 245 81 81 chr1 32905163 32905230 -164290202 - MER91B DNA Tip100 -107 83 18 6 836 1745 211 73 8 chr1 32905819 32906191 -164289241 - RMER19C LTR ERVK -29 582 187 6 836 21436 59 1 0 chr1 32906193 32909797 -164285635 - L1Md_F2 LINE L1 0 6582 2977 6 836 709 154 141 43 chr1 32909797 32909960 -164285472 - RMER19C LTR ERVK -432 179 1 6 836 314 185 48 24 chr1 32910110 32910193 -164285239 + MLT1A LTR MaLR 285 369 -5 6 836 626 96 10 0 chr1 32910366 32910470 -164284962 + (TG)n Simple_repeat Simple_repeat 1 105 0 6 836 410 348 40 61 chr1 32910471 32910773 -164284659 - B4 SINE B4 -14 278 1 6 836 845 333 39 25 chr1 32911233 32911590 -164283842 - MTE2a LTR MaLR 0 379 18 6 836 5388 89 21 23 chr1 32912227 32913086 -164282346 - L1_Mur1 LINE L1 -314 5572 4716 6 836 3608 120 16 4 chr1 32913089 32913639 -164281793 + Lx3_Mus LINE L1 6451 7007 -2 6 836 676 259 0 33 chr1 32913831 32913983 -164281449 + B1_Mur2 SINE Alu 1 147 -2 6 836 360 0 0 0 chr1 32914769 32914809 -164280623 + (TAA)n Simple_repeat Simple_repeat 2 41 0 6 836 261 0 0 0 chr1 32915714 32915743 -164279689 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 836 1178 243 81 36 chr1 32917024 32917382 -164278050 + MTEb LTR MaLR 1 374 -5 6 836 506 344 60 28 chr1 32917847 32918131 -164277301 + RMER15 LTR ERVL 189 481 -94 6 836 325 39 0 38 chr1 32918373 32918426 -164277006 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 836 1213 54 0 0 chr1 32918426 32918573 -164276859 - B1_Mm SINE Alu 0 147 1 6 836 252 253 23 46 chr1 32919478 32919565 -164275867 - LTR33A_ LTR ERVL -3 528 444 6 836 210 122 49 0 chr1 32919576 32919617 -164275815 + GA-rich Low_complexity Low_complexity 2 44 0 6 836 4007 209 75 24 chr1 32919842 32920268 -164275164 + MTC-int LTR MaLR 295 754 -504 6 836 4844 50 5 0 chr1 32920268 32920852 -164274580 + LTRIS_Mus LTR ERV1 1 587 0 6 836 4007 209 75 24 chr1 32920852 32921340 -164274092 + MTC-int LTR MaLR 755 1256 -2 6 836 1835 210 16 26 chr1 32921342 32921767 -164273665 + MTC LTR MaLR 1 421 0 6 836 384 333 0 71 chr1 32921922 32921974 -164273458 + Lx8 LINE L1 5742 5788 -515 6 836 261 83 0 0 chr1 32921974 32922010 -164273422 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 836 520 284 5 10 chr1 32922010 32922195 -164273237 + Lx8 LINE L1 5759 5936 -367 6 836 597 277 18 55 chr1 32922641 32922805 -164272627 + B3 SINE B2 57 214 -2 6 836 254 305 27 54 chr1 32923473 32923584 -164271848 - PB1D10 SINE Alu -9 108 1 6 836 521 151 38 0 chr1 32923786 32923892 -164271540 - L1_Mur3 LINE L1 -2769 3111 3002 6 836 687 122 0 0 chr1 32923892 32924023 -164271409 + (TC)n Simple_repeat Simple_repeat 2 132 0 6 836 6546 186 69 13 chr1 32924029 32924800 -164270632 - L1_Mur3 LINE L1 -2891 2989 2194 6 836 783 0 0 0 chr1 32924800 32924887 -164270545 + (GAA)n Simple_repeat Simple_repeat 1 87 0 6 836 6546 186 69 13 chr1 32924887 32925055 -164270377 - L1_Mur3 LINE L1 -3687 2193 2021 6 836 324 0 0 0 chr1 32925055 32925091 -164270341 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 836 6546 186 69 13 chr1 32925091 32925112 -164270320 - L1_Mur3 LINE L1 -3860 2020 1992 6 836 327 104 0 0 chr1 32925112 32925160 -164270272 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 836 6546 189 61 33 chr1 32925160 32926253 -164269179 - L1_Mur3 LINE L1 -3889 1991 858 6 836 1126 315 33 23 chr1 32926241 32926927 -164268505 - L1_Mur3 LINE L1 -7054 674 18 6 836 268 306 10 10 chr1 32926960 32927059 -164268373 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 836 374 322 114 53 chr1 32927068 32927330 -164268102 - B4 SINE B4 -14 278 1 6 836 232 302 19 0 chr1 32927423 32927476 -164267956 - ID4 SINE ID -13 70 17 6 836 449 266 54 136 chr1 32927712 32928029 -164267403 + B4A SINE B4 2 292 0 6 836 183 80 0 0 chr1 32928048 32928073 -164267359 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 836 504 152 46 23 chr1 32928335 32928510 -164266922 + G-rich Low_complexity Low_complexity 1 179 0 6 836 220 255 18 18 chr1 32929224 32929280 -164266152 - MIR3 SINE MIR -10 198 143 6 836 383 0 21 0 chr1 32929742 32929789 -164265643 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 836 22 35 0 0 chr1 32930175 32930204 -164265228 + AT_rich Low_complexity Low_complexity 1 29 0 6 836 180 0 0 0 chr1 32931118 32931138 -164264294 + (T)n Simple_repeat Simple_repeat 1 20 0 6 836 550 235 182 7 chr1 32933091 32933245 -164262187 + B4A SINE B4 68 248 -44 6 836 411 21 0 0 chr1 32933246 32933294 -164262138 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 836 462 91 0 0 chr1 32933310 32933387 -164262045 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 836 189 107 0 0 chr1 32933394 32933422 -164262010 + (CAG)n Simple_repeat Simple_repeat 1 28 0 6 836 626 295 35 32 chr1 32933693 32934033 -164261399 - L1MC3 LINE L1 -112 7673 7333 6 836 5087 230 38 48 chr1 32934713 32935898 -164259534 - Lx5 LINE L1 -475 6575 5400 6 836 2854 75 5 42 chr1 32935898 32936301 -164259131 + RLTR10 LTR ERVK 1 388 -2 6 836 5087 213 40 54 chr1 32936301 32937323 -164258109 - Lx5 LINE L1 -478 5399 4391 6 836 1668 185 75 9 chr1 32937327 32937649 -164257783 - ORR1B1 LTR MaLR -4 390 48 6 836 427 127 0 0 chr1 32937656 32937727 -164257705 - Lx5 LINE L1 -1489 4397 4327 6 836 3587 182 128 40 chr1 32937727 32937816 -164257616 - RMER19B LTR ERVK 0 902 803 6 836 2500 181 77 39 chr1 32937816 32938362 -164257070 + RMER2 LTR ERV1 1 567 0 6 836 3587 182 128 40 chr1 32938362 32939101 -164256331 - RMER19B LTR ERVK -100 802 1 6 836 331 212 12 0 chr1 32939101 32939186 -164256246 - Lx5 LINE L1 -1554 4323 4238 6 836 760 194 14 0 chr1 32939188 32939327 -164256105 - B1_Mur4 SINE Alu -9 141 1 6 836 501 276 64 54 chr1 32939661 32939864 -164255568 - B3 SINE B2 -10 206 2 6 836 3533 25 0 0 chr1 32939982 32940378 -164255054 + MTA_Mm LTR MaLR 1 396 0 6 836 448 294 82 6 chr1 32940904 32941075 -164254357 - B3A SINE B2 -14 184 1 6 836 493 177 14 0 chr1 32941238 32941385 -164254047 + GA-rich Low_complexity Low_complexity 2 150 0 6 836 438 20 0 0 chr1 32942102 32942153 -164253279 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 836 544 300 102 20 chr1 32942154 32942282 -164253150 - B4 SINE B4 -14 278 128 6 836 327 25 0 0 chr1 32942282 32942322 -164253110 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 836 544 300 102 20 chr1 32942322 32942448 -164252984 - B4 SINE B4 -165 127 3 6 836 22 0 0 0 chr1 32942526 32942548 -164252884 + AT_rich Low_complexity Low_complexity 1 22 0 6 836 1106 106 0 0 chr1 32942619 32942789 -164252643 - Lx LINE L1 0 6654 6485 6 836 944 178 67 8 chr1 32943231 32943469 -164251963 - Lx9 LINE L1 0 7644 7393 6 836 1175 92 6 6 chr1 32943670 32943835 -164251597 + B2_Mm2 SINE B2 1 165 -30 6 836 2014 179 12 59 chr1 32945184 32945606 -164249826 + RLTR31A_Mm LTR ERVK 1 402 -182 6 836 640 290 71 82 chr1 32945722 32945972 -164249460 + L1MB7 LINE L1 5585 5831 -353 6 836 989 178 80 20 chr1 32945972 32946173 -164249259 + B3 SINE B2 1 213 -3 6 836 640 290 71 82 chr1 32946173 32946516 -164248916 + L1MB7 LINE L1 5832 6171 -13 6 836 8229 46 34 4 chr1 32946522 32947594 -164247838 - RLTR1B-int LTR ERV1 -822 2477 1374 6 836 3188 48 20 0 chr1 32947577 32948323 -164247109 + RLTR1B-int LTR ERV1 2459 3299 0 6 836 2865 50 30 106 chr1 32948323 32948795 -164246637 + RLTR1B LTR ERV1 1 436 -76 6 836 853 181 0 18 chr1 32949745 32949908 -164245524 + Lx2 LINE L1 6473 6632 -365 6 836 7326 83 5 2 chr1 32949905 32951441 -164243991 + L1_Mus1 LINE L1 5028 6567 0 6 836 409 154 0 0 chr1 32951738 32951803 -164243629 - ORR1C1 LTR MaLR 0 378 314 6 836 955 86 6 38 chr1 32951804 32951962 -164243470 + L1Md_F2 LINE L1 6429 6581 -1 6 836 1537 161 91 0 chr1 32952029 32952314 -164243118 - ORR1C1 LTR MaLR -59 319 9 6 836 2393 122 16 3 chr1 32952635 32953006 -164242426 + Lx2 LINE L1 6621 6996 -1 6 836 1089 175 122 48 chr1 32954002 32954175 -164241257 + Lx9 LINE L1 7301 7489 -155 6 836 5780 73 12 66 chr1 32954175 32955022 -164240410 - RLTR13B4 LTR ERVK 0 803 3 6 836 477 0 0 0 chr1 32955022 32955075 -164240357 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 836 1089 175 122 48 chr1 32955075 32955212 -164240220 + Lx9 LINE L1 7490 7634 -10 6 836 3217 62 0 0 chr1 32955329 32955730 -164239702 - L1_Mus1 LINE L1 0 6567 6167 6 836 497 270 75 44 chr1 32955760 32955919 -164239513 + RSINE1 SINE B4 2 165 0 6 836 706 147 18 9 chr1 32956237 32956468 -164238964 + (TG)n Simple_repeat Simple_repeat 1 233 0 6 836 991 112 0 11 chr1 32956486 32956667 -164238765 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 836 595 297 27 33 chr1 32957870 32958020 -164237412 + RSINE1 SINE B4 16 164 -1 6 836 233 353 83 89 chr1 32958020 32958038 -164237394 + B3 SINE B2 15 181 -35 6 836 387 0 0 0 chr1 32958038 32958081 -164237351 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 6 836 2352 162 24 7 chr1 32959838 32960248 -164235184 + MTC LTR MaLR 5 421 0 6 836 466 129 45 34 chr1 32960345 32960422 -164235010 - B1F2 SINE Alu -13 136 59 6 836 414 0 0 0 chr1 32960422 32960468 -164234964 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 836 24 0 0 0 chr1 32960793 32960817 -164234615 + AT_rich Low_complexity Low_complexity 1 24 0 6 836 241 94 0 0 chr1 32961634 32961666 -164233766 + tRNA-Arg-AGG tRNA tRNA 7 38 -38 6 836 253 304 0 0 chr1 32961927 32961983 -164233449 + LTR68 LTR ERV1 130 185 -555 6 836 247 333 0 11 chr1 32962635 32962726 -164232706 + CT-rich Low_complexity Low_complexity 2 91 0 6 836 643 298 47 50 chr1 32964387 32964747 -164230685 + RLTR15 LTR ERVK 1 359 0 6 836 309 244 28 94 chr1 32965083 32965296 -164230136 + Lx9 LINE L1 7395 7593 -51 6 836 726 120 0 0 chr1 32965418 32965543 -164229889 + (GGA)n Simple_repeat Simple_repeat 3 127 0 6 836 261 191 152 33 chr1 32965650 32965742 -164229690 + MLT1A1 LTR MaLR 306 408 0 6 836 272 188 84 17 chr1 32965957 32966076 -164229356 + (ATG)n Simple_repeat Simple_repeat 2 128 0 6 836 211 243 0 0 chr1 32966275 32966312 -164229120 + PB1D9 SINE Alu 32 68 -52 6 836 243 0 0 0 chr1 32966812 32966839 -164228593 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 836 36681 45 3 13 chr1 32966841 32973026 -164222406 - L1Md_A LINE L1 -1 6581 466 6 836 1518 204 51 11 chr1 32973436 32973792 -164221640 - ORR1D1 LTR MaLR 0 374 5 6 836 313 305 127 25 chr1 32974047 32974171 -164221261 + B2_Mm2 SINE B2 4 145 -50 6 836 183 100 0 0 chr1 32974171 32974201 -164221231 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 836 313 305 127 25 chr1 32974201 32974234 -164221198 + B2_Mm2 SINE B2 146 177 -18 6 836 410 302 125 40 chr1 32974284 32974484 -164220948 - MTEa LTR MaLR -78 301 85 7 836 180 262 164 47 chr1 32974527 32974655 -164220777 - MIRb SINE MIR -85 183 41 7 836 375 23 0 0 chr1 32975951 32975995 -164219437 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 836 857 308 34 8 chr1 32976712 32976977 -164218455 - MLT1B LTR MaLR 0 390 119 7 836 252 289 22 67 chr1 32977410 32977499 -164217933 + BC1_Mm scRNA scRNA 10 94 -58 7 836 322 299 13 0 chr1 32978236 32978313 -164217119 + ID4 SINE ID 1 78 -5 7 836 1975 146 97 3 chr1 32978315 32978666 -164216766 + ORR1B1 LTR MaLR 3 386 -8 7 836 460 122 41 0 chr1 32978708 32978806 -164216626 + GA-rich Low_complexity Low_complexity 1 102 0 7 836 305 289 7 0 chr1 32978822 32978912 -164216520 + B4A SINE B4 106 197 -95 7 836 203 262 0 0 chr1 32978920 32978962 -164216470 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 836 202 315 127 75 chr1 32979243 32979456 -164215976 - MIRm SINE MIR -14 262 39 7 836 5815 70 6 21 chr1 32980235 32980744 -164214688 - L1Md_A LINE L1 -510 5373 4877 7 836 1640 37 0 0 chr1 32980744 32980932 -164214500 - B2_Mm1a SINE B2 -5 188 1 7 836 5815 70 6 21 chr1 32980932 32981269 -164214163 - L1Md_A LINE L1 -1007 4876 4540 7 836 4177 128 5 19 chr1 32981267 32982542 -164212890 - L1Md_A LINE L1 -4186 1697 230 7 836 186 43 0 0 chr1 32983395 32983418 -164212014 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 836 693 123 0 9 chr1 32983464 32983579 -164211853 - L1_Rod LINE L1 -91 5756 5643 7 836 773 309 36 18 chr1 32983584 32983917 -164211515 + Lx9 LINE L1 7054 7392 -252 7 836 385 279 30 90 chr1 32983917 32984009 -164211423 + RMER17C LTR ERVK 1 84 -326 7 836 396 0 0 0 chr1 32984009 32984053 -164211379 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 836 351 0 0 0 chr1 32984053 32984091 -164211341 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 836 431 299 27 76 chr1 32984091 32984408 -164211024 + RMER17C LTR ERVK 84 378 -32 7 836 542 15 15 0 chr1 32984486 32984553 -164210879 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 836 354 123 0 0 chr1 32984555 32984612 -164210820 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 836 26 0 0 0 chr1 32984728 32984754 -164210678 + AT_rich Low_complexity Low_complexity 1 26 0 7 836 213 39 0 0 chr1 32985997 32986023 -164209409 + (T)n Simple_repeat Simple_repeat 1 26 0 7 836 231 232 0 18 chr1 32986244 32986301 -164209131 + CT-rich Low_complexity Low_complexity 3 58 0 7 836 3496 70 2 0 chr1 32986738 32987194 -164208238 + L1Md_T LINE L1 6126 6582 0 7 836 882 0 0 0 chr1 32988082 32988180 -164207252 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 7 836 563 288 116 60 chr1 32991131 32991467 -164203965 - MER77 LTR ERVL -4 603 249 7 836 261 276 26 13 chr1 32991635 32991712 -164203720 + RMER30 DNA MER1_type 10 87 -115 7 836 444 67 0 0 chr1 32991721 32991781 -164203651 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 836 279 320 31 31 chr1 32991793 32991922 -164203510 - Charlie12 DNA MER1_type -2738 135 7 7 836 279 366 0 0 chr1 32991833 32991926 -164203506 + RMER30 DNA MER1_type 107 199 -3 7 836 321 26 0 0 chr1 32992391 32992429 -164203003 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 836 266 329 0 0 chr1 32992695 32992768 -164202664 - ID4_ SINE ID -10 73 1 7 836 1321 102 21 0 chr1 32994028 32994215 -164201217 + B2_Mm2 SINE B2 2 192 -3 7 836 662 96 40 0 chr1 32994816 32994941 -164200491 + (TAGA)n Simple_repeat Simple_repeat 1 130 0 7 836 1806 253 20 116 chr1 32994959 32995544 -164199888 + RMER19C LTR ERVK 83 611 0 7 836 540 108 36 0 chr1 32995545 32995656 -164199776 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 7 836 213 108 0 0 chr1 32996444 32996481 -164198951 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 7 836 342 309 31 47 chr1 32996788 32996917 -164198515 - PB1 SINE Alu 0 127 1 7 836 32 26 0 0 chr1 32997283 32997322 -164198110 + AT_rich Low_complexity Low_complexity 1 39 0 7 836 582 319 32 6 chr1 32998676 32998834 -164196598 + B3A SINE B2 3 164 -34 7 836 503 102 0 11 chr1 32998837 32998926 -164196506 + (CATA)n Simple_repeat Simple_repeat 1 88 0 7 836 234 0 0 0 chr1 32999144 32999170 -164196262 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 7 836 951 276 5 0 chr1 32999401 32999600 -164195832 - ID_B1 SINE B4 -16 208 9 7 836 246 207 0 0 chr1 32999687 32999745 -164195687 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 836 381 316 96 15 chr1 32999773 32999881 -164195551 + MTE2b LTR MaLR 170 288 -91 7 836 679 186 0 0 chr1 32999881 32999999 -164195433 + ORR1D1 LTR MaLR 1 118 -256 7 836 1003 231 34 21 chr1 33000000 33000239 -164195193 + ORR1D1 LTR MaLR 120 361 -13 1 836 304 169 14 122 chr1 33000243 33000317 -164195115 + MTEa LTR MaLR 281 346 -33 2 836 879 227 91 140 chr1 33000529 33000946 -164194486 + RLTR11B LTR ERVK 4 412 -29 3 836 1645 230 2 61 chr1 33001172 33001630 -164193802 + Lx2B LINE L1 6548 6978 -22 4 836 25 0 0 0 chr1 33001630 33001655 -164193777 + AT_rich Low_complexity Low_complexity 1 25 0 5 836 285 343 164 51 chr1 33001821 33002346 -164193086 - L2 LINE L2 -578 2841 2258 6 836 336 287 0 0 chr1 33003470 33003557 -164191875 - LTR33 LTR ERVL -1 514 428 7 836 841 122 22 0 chr1 33003850 33003989 -164191443 + ORR1D1 LTR MaLR 7 148 -226 8 836 15958 86 50 22 chr1 33003998 33005906 -164189526 + MusHAL1 LINE L1 12 2044 -1309 9 836 564 15 0 0 chr1 33005906 33005971 -164189461 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 836 15958 79 57 32 chr1 33005971 33006499 -164188933 + MusHAL1 LINE L1 2045 2592 -761 9 836 261 0 0 0 chr1 33006499 33006528 -164188904 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1 836 15958 79 57 32 chr1 33006528 33007342 -164188090 + MusHAL1 LINE L1 2593 3351 -2 9 836 3393 70 0 2 chr1 33008767 33009197 -164186235 + L1_Mus1 LINE L1 6139 6567 0 1 836 22 0 0 0 chr1 33009208 33009230 -164186202 + AT_rich Low_complexity Low_complexity 1 22 0 1 836 489 110 0 0 chr1 33010174 33010247 -164185185 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 836 28 0 0 0 chr1 33010667 33010695 -164184737 + AT_rich Low_complexity Low_complexity 1 28 0 1 836 260 27 27 0 chr1 33010786 33010823 -164184609 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 1 836 291 28 0 0 chr1 33010827 33010863 -164184569 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1 836 484 163 28 52 chr1 33010901 33011265 -164184167 + (TATATG)n Simple_repeat Simple_repeat 1 354 0 1 836 307 201 6 61 chr1 33011299 33011479 -164183953 + (TATATG)n Simple_repeat Simple_repeat 2 171 0 1 836 1120 202 53 60 chr1 33011558 33011858 -164183574 - L1_Rod LINE L1 -81 5766 5469 1 836 623 267 18 67 chr1 33011861 33012190 -164183242 + L1_Rod LINE L1 4200 4512 -1335 2 836 2297 279 63 53 chr1 33012229 33012473 -164182959 + Lx9 LINE L1 6437 6688 -956 2 836 858 134 0 30 chr1 33012473 33012642 -164182790 - Lx3A LINE L1 0 6981 6818 2 836 2297 279 63 53 chr1 33012642 33013328 -164182104 + Lx9 LINE L1 6689 7377 -267 2 836 303 28 0 0 chr1 33013377 33013413 -164182019 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 836 536 132 8 34 chr1 33013560 33013678 -164181754 + GA-rich Low_complexity Low_complexity 3 117 0 2 836 518 239 3 8 chr1 33013678 33013820 -164181612 + L1_Rod LINE L1 5345 5516 -370 2 836 254 259 112 33 chr1 33014320 33014472 -164180960 + L1M4 LINE L1 4540 4703 -1443 2 836 1040 272 98 22 chr1 33014537 33014946 -164180486 - Charlie1 DNA MER1_type -709 2072 1633 2 836 743 193 0 12 chr1 33015088 33015256 -164180176 + GA-rich Low_complexity Low_complexity 3 168 0 2 836 190 194 30 0 chr1 33015269 33015336 -164180096 + GA-rich Low_complexity Low_complexity 2 70 0 2 836 254 259 127 49 chr1 33015338 33015452 -164179980 - Charlie1 DNA MER1_type -2652 129 4 2 836 237 83 0 0 chr1 33015594 33015630 -164179802 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 836 437 273 69 46 chr1 33016371 33016544 -164178888 + ORR1E LTR MaLR 18 194 -165 2 836 246 396 22 0 chr1 33016809 33016900 -164178532 - MIR SINE MIR -68 140 48 3 836 320 343 21 14 chr1 33017236 33017378 -164178054 + L1MEg LINE L1 1021 1163 -4921 3 836 555 74 0 0 chr1 33017513 33017594 -164177838 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 836 868 90 113 0 chr1 33017780 33017913 -164177519 + B1_Mus1 SINE Alu 1 148 0 3 836 557 277 6 42 chr1 33017938 33018104 -164177328 + RSINE1 SINE B4 2 161 -4 3 836 303 237 0 0 chr1 33018111 33018204 -164177228 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 836 498 229 0 0 chr1 33018222 33018401 -164177031 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 836 548 214 6 0 chr1 33018438 33018611 -164176821 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 836 2935 114 40 0 chr1 33018611 33019040 -164176392 - RLTR41 LTR ERV1 0 446 1 3 836 195 42 0 0 chr1 33019075 33019099 -164176333 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 836 265 241 11 46 chr1 33019404 33019491 -164175941 + L1M2 LINE L1 5347 5430 -861 3 836 330 26 0 0 chr1 33019769 33019808 -164175624 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 3 836 1086 76 0 20 chr1 33019889 33019901 -164175531 - B1_Mus1 SINE Alu -3 145 137 4 836 315 0 0 0 chr1 33019901 33019936 -164175496 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 836 1086 76 0 20 chr1 33019936 33020071 -164175361 - B1_Mus1 SINE Alu -12 136 2 4 836 225 337 69 0 chr1 33020386 33020487 -164174945 + MLT1E1A LTR MaLR 3 110 -544 4 836 247 364 115 40 chr1 33020553 33020779 -164174653 + MLT1E1A LTR MaLR 319 561 -119 4 836 232 274 55 117 chr1 33020912 33021040 -164174392 - MER74C LTR ERVL -73 387 268 4 836 898 278 49 131 chr1 33021463 33021852 -164173580 - ORR1D2 LTR MaLR -13 357 1 4 836 2031 87 27 3 chr1 33023519 33023818 -164171614 - L1_Mus3 LINE L1 -2 6636 6331 4 836 447 113 0 0 chr1 33024065 33024136 -164171296 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 836 274 146 12 12 chr1 33024222 33024305 -164171127 + T-rich Low_complexity Low_complexity 1 83 0 4 836 575 307 0 12 chr1 33024461 33024626 -164170806 + RSINE1 SINE B4 2 164 -1 4 836 940 80 84 24 chr1 33024640 33024806 -164170626 + L1_Mus4 LINE L1 6460 6635 -1 4 836 819 210 117 11 chr1 33024961 33025149 -164170283 - B3 SINE B2 0 216 9 5 836 211 229 0 0 chr1 33025301 33025349 -164170083 + A-rich Low_complexity Low_complexity 1 48 0 5 836 257 305 14 34 chr1 33025525 33025670 -164169762 + MIR SINE MIR 40 188 -88 5 836 22 35 0 0 chr1 33026293 33026322 -164169110 + AT_rich Low_complexity Low_complexity 1 29 0 5 836 344 339 9 0 chr1 33026361 33026470 -164168962 + L1MA4A LINE L1 4841 4950 -1193 5 836 1171 282 87 39 chr1 33026843 33027415 -164168017 + Lx7 LINE L1 6729 7328 -368 5 836 1904 170 79 5 chr1 33027907 33028274 -164167158 + ORR1B1 LTR MaLR 1 394 0 5 836 2186 249 90 32 chr1 33028685 33030078 -164165354 - RMER1A Other Other -12 1054 1 5 837 429 287 107 36 chr1 33030423 33030945 -164164487 + L1MA4A LINE L1 5375 5915 -388 5 837 500 378 84 7 chr1 33031165 33031450 -164163982 + L1M4 LINE L1 5478 5784 -394 5 837 330 123 0 0 chr1 33031457 33031514 -164163918 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 837 27670 63 2 1 chr1 33032138 33036606 -164158826 - L1Md_F2 LINE L1 0 6582 2110 6 837 7351 65 4 3 chr1 33036607 33037771 -164157661 - L1_Mus1 LINE L1 -7 6560 5395 6 837 342 67 0 0 chr1 33038138 33038183 -164157249 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 837 234 220 17 0 chr1 33038793 33038852 -164156580 - L1ME2 LINE L1 -186 5978 5919 6 837 339 323 50 66 chr1 33039096 33039332 -164156100 + MLT1F1 LTR MaLR 330 676 -4 6 837 2421 179 40 31 chr1 33039344 33039863 -164155569 - RLTR28 LTR ERVL 0 524 1 6 837 1621 36 0 0 chr1 33039972 33040168 -164155264 + L1Md_F3 LINE L1 6375 6570 -14 6 837 3343 40 0 5 chr1 33040396 33040799 -164154633 - L1Md_F2 LINE L1 -19 6563 6163 6 837 262 306 0 0 chr1 33041155 33041217 -164154215 - BLACKJACK DNA AcHobo 0 2944 2883 6 837 474 220 96 29 chr1 33041972 33042108 -164153324 + RSINE1 SINE B4 2 146 -19 6 837 275 26 51 0 chr1 33042112 33042151 -164153281 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 7 837 192 97 0 0 chr1 33042230 33042261 -164153171 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 837 346 315 41 18 chr1 33043078 33043249 -164152183 - Arthur1C DNA Tip100 -171 192 18 7 837 1000 254 30 4 chr1 33043252 33043521 -164151911 - Lx8 LINE L1 -907 6566 6291 7 837 372 22 0 0 chr1 33043947 33043992 -164151440 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 837 252 0 0 0 chr1 33043992 33044019 -164151413 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 837 399 258 40 91 chr1 33044376 33044551 -164150881 + Lx7 LINE L1 6739 6904 -792 7 837 397 293 21 10 chr1 33044551 33044651 -164150781 + B4A SINE B4 104 204 -88 7 837 586 347 65 0 chr1 33044997 33045242 -164150190 - MER2B DNA MER2_type -74 262 2 7 837 415 327 26 81 chr1 33045831 33046104 -164149328 + L1MEg LINE L1 643 900 -5184 7 837 237 163 0 0 chr1 33046316 33046365 -164149067 + A-rich Low_complexity Low_complexity 1 49 0 8 837 1056 100 0 0 chr1 33046368 33046508 -164148924 + B1_Mus1 SINE Alu 1 140 -8 8 837 216 86 0 0 chr1 33046508 33046543 -164148889 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 837 2271 183 52 2 chr1 33046561 33047020 -164148412 - Lx2 LINE L1 -550 6447 5966 8 837 1538 153 15 0 chr1 33047021 33047295 -164148137 + Lx2A1 LINE L1 6730 7007 -1 8 837 1454 74 5 0 chr1 33047600 33047790 -164147642 + B2_Mm1t SINE B2 2 192 -1 8 837 591 342 136 4 chr1 33047800 33048073 -164147359 + Lx8 LINE L1 6263 6571 -902 8 837 180 0 0 0 chr1 33048194 33048214 -164147218 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 837 236 30 0 29 chr1 33048253 33048287 -164147145 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 837 6858 208 39 9 chr1 33048290 33050403 -164145029 - Lx5 LINE L1 -724 6736 4325 8 837 698 333 53 7 chr1 33051086 33051370 -164144062 + MER89 LTR ERV1 214 510 -49 9 837 413 226 59 77 chr1 33051372 33051582 -164143850 - L1MB2 LINE L1 -276 5895 5692 9 837 455 287 36 14 chr1 33051608 33051746 -164143686 + RMER15 LTR ERVL 422 562 -13 9 837 625 332 35 24 chr1 33051928 33052561 -164142871 - L1_Rod LINE L1 -3940 1907 1268 9 837 21 0 0 0 chr1 33054613 33054634 -164140798 + AT_rich Low_complexity Low_complexity 1 21 0 9 837 361 338 73 64 chr1 33054957 33055175 -164140257 + MLT1K LTR MaLR 261 480 -115 9 837 4841 121 11 51 chr1 33056742 33057582 -164137850 + RLTR13D1 LTR ERVK 1 806 0 9 837 307 57 18 36 chr1 33057906 33057961 -164137471 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 9 837 274 294 0 14 chr1 33058042 33058111 -164137321 + ID4 SINE ID 3 70 -13 9 837 987 114 0 0 chr1 33058119 33058294 -164137138 + (GA)n Simple_repeat Simple_repeat 2 176 0 9 837 181 232 0 28 chr1 33058312 33058383 -164137049 + (CAAA)n Simple_repeat Simple_repeat 4 72 0 1 837 464 189 13 13 chr1 33058384 33058534 -164136898 + (CA)n Simple_repeat Simple_repeat 1 150 0 1 837 495 87 0 0 chr1 33058638 33058707 -164136725 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 1 837 221 283 179 32 chr1 33058991 33059086 -164136346 - PB1D9 SINE Alu 0 120 12 1 837 294 268 0 0 chr1 33059279 33059335 -164136097 - B3A SINE B2 -86 112 57 1 837 858 287 57 29 chr1 33059354 33059670 -164135762 - Lx8 LINE L1 -381 7092 6768 1 837 617 119 0 10 chr1 33059974 33060076 -164135356 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 837 21 0 0 0 chr1 33060270 33060291 -164135141 + AT_rich Low_complexity Low_complexity 1 21 0 1 837 990 80 0 0 chr1 33061960 33062097 -164133335 - Lx LINE L1 -845 5809 5673 1 837 3401 125 0 0 chr1 33062098 33062626 -164132806 - L1_Mus2 LINE L1 -189 6377 5850 1 837 3174 151 5 0 chr1 33062625 33063176 -164132256 + L1_Mm LINE L1 5120 5673 -210 1 837 516 32 0 0 chr1 33063176 33063238 -164132194 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 837 1308 76 0 0 chr1 33063247 33063419 -164132013 - L1_Mus1 LINE L1 -1 6566 6395 1 837 3207 128 10 16 chr1 33063472 33063988 -164131444 + Lx LINE L1 6137 6649 -5 1 837 9954 142 34 11 chr1 33063994 33066425 -164129007 + L1Md_F LINE L1 305 2791 -3092 1 837 1014 123 6 16 chr1 33066425 33066607 -164128825 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 837 730 118 34 34 chr1 33066629 33066805 -164128627 + CT-rich Low_complexity Low_complexity 2 177 0 1 837 2390 95 3 23 chr1 33066850 33067195 -164128237 - L1_Mus2 LINE L1 0 6566 6229 1 837 4257 92 0 31 chr1 33067193 33067799 -164127633 + L1_Mus2 LINE L1 5980 6566 0 1 837 21 0 0 0 chr1 33067868 33067889 -164127543 + AT_rich Low_complexity Low_complexity 1 21 0 1 837 912 250 20 37 chr1 33067995 33068290 -164127142 + L1_Rod LINE L1 5421 5710 -137 1 837 248 211 13 0 chr1 33068313 33068389 -164127043 + GA-rich Low_complexity Low_complexity 2 78 0 1 837 234 312 0 27 chr1 33068568 33068680 -164126752 + L1MA9 LINE L1 6174 6282 -30 1 837 251 319 83 31 chr1 33069176 33069365 -164126067 + MIR SINE MIR 17 204 -64 1 837 634 136 69 46 chr1 33069440 33069571 -164125861 - Lx4A LINE L1 -151 6907 6774 1 837 36240 30 1 0 chr1 33070201 33077047 -164118385 - L1Md_T LINE L1 0 6585 1 1 837 536 254 14 48 chr1 33077300 33077445 -164117987 - B1_Mur1 SINE Alu -8 141 2 1 837 225 305 0 0 chr1 33077912 33077971 -164117461 - RSINE1 SINE B4 -104 61 3 1 837 25 0 0 0 chr1 33077971 33077996 -164117436 + AT_rich Low_complexity Low_complexity 1 25 0 1 837 2549 109 23 144 chr1 33078073 33078413 -164117019 + RLTR11B LTR ERVK 1 352 -101 1 837 981 111 21 0 chr1 33078413 33078557 -164116875 + B1_Mus1 SINE Alu 2 148 0 1 837 2549 109 23 144 chr1 33078557 33078731 -164116701 + RLTR11B LTR ERVK 353 453 0 1 837 224 200 46 8 chr1 33078819 33078950 -164116482 + (TA)n Simple_repeat Simple_repeat 1 136 0 1 837 289 213 28 42 chr1 33078959 33079101 -164116331 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 1 837 207 0 0 0 chr1 33079858 33079881 -164115551 + (A)n Simple_repeat Simple_repeat 1 23 0 1 837 5000 77 22 14 chr1 33080284 33080979 -164114453 - L1_Mus3 LINE L1 -3 6635 5936 1 837 23 0 0 0 chr1 33081459 33081482 -164113950 + AT_rich Low_complexity Low_complexity 1 23 0 1 837 200 204 0 36 chr1 33082886 33082942 -164112490 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1 837 279 113 0 0 chr1 33084469 33084522 -164110910 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 837 1099 216 4 53 chr1 33084523 33084768 -164110664 - RLTR14 LTR ERV1 -143 239 7 1 837 243 0 0 0 chr1 33084862 33084889 -164110543 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 837 216 0 0 0 chr1 33085065 33085089 -164110343 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 837 439 260 67 112 chr1 33088356 33088490 -164106942 + B3A SINE B2 1 128 -70 1 837 261 0 0 0 chr1 33088490 33088519 -164106913 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 837 481 291 52 13 chr1 33089233 33089386 -164106046 + MLT1A0 LTR MaLR 207 365 0 1 837 223 401 79 0 chr1 33090233 33090410 -164105022 - MIR SINE MIR -9 253 63 1 837 584 252 23 76 chr1 33090422 33090594 -164104838 + RSINE1 SINE B4 2 164 -1 1 837 5978 38 1 0 chr1 33090870 33091585 -164103847 - L1Md_A LINE L1 -1 6581 5866 1 837 226 277 68 34 chr1 33092687 33092833 -164102599 + L1MB1 LINE L1 6017 6167 -1 1 837 6591 59 72 5 chr1 33093897 33094767 -164100665 - RLTR13B3 LTR ERVK 0 929 1 1 837 201 39 0 0 chr1 33094825 33094851 -164100581 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 1 837 756 116 23 11 chr1 33094851 33095026 -164100406 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 837 333 0 0 0 chr1 33095026 33095063 -164100369 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 837 432 0 0 0 chr1 33095063 33095111 -164100321 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 837 22 0 0 0 chr1 33095189 33095211 -164100221 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 189 0 0 0 chr1 33095852 33095873 -164099559 + (A)n Simple_repeat Simple_repeat 1 21 0 1 837 333 247 39 0 chr1 33096153 33096230 -164099202 + B3A SINE B2 1 80 -118 1 837 459 0 0 0 chr1 33096282 33096333 -164099099 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 837 324 308 86 68 chr1 33096682 33097051 -164098381 + MLT1D LTR MaLR 67 450 -17 1 837 336 24 0 0 chr1 33097160 33097201 -164098231 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1 837 791 72 0 9 chr1 33097201 33097312 -164098120 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 1 837 417 97 0 0 chr1 33097339 33097411 -164098021 + (CGAA)n Simple_repeat Simple_repeat 2 73 0 1 837 235 304 193 69 chr1 33100054 33100199 -164095233 + B3 SINE B2 48 210 -6 1 837 26 0 0 0 chr1 33100199 33100225 -164095207 + AT_rich Low_complexity Low_complexity 1 26 0 1 837 261 0 0 0 chr1 33100308 33100337 -164095095 + (A)n Simple_repeat Simple_repeat 1 29 0 1 837 624 62 0 0 chr1 33101241 33101322 -164094110 + (TAAAA)n Simple_repeat Simple_repeat 2 82 0 1 837 229 348 11 0 chr1 33101851 33101943 -164093489 + B4A SINE B4 3 95 -197 1 837 363 44 0 0 chr1 33102114 33102159 -164093273 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 837 498 203 21 0 chr1 33102190 33102333 -164093099 + GA-rich Low_complexity Low_complexity 1 146 0 1 837 2757 19 44 0 chr1 33102479 33102799 -164092633 + L1Md_F2 LINE L1 6236 6569 -13 1 837 36921 5 0 0 chr1 33102809 33108244 -164087188 + L1Md_A LINE L1 151 5586 -297 1 837 8916 6 0 11 chr1 33108244 33109251 -164086181 + L1Md_A LINE L1 5587 6582 0 1 837 390 330 0 0 chr1 33109501 33109616 -164085816 + PB1D10 SINE Alu 2 116 -1 1 837 21 71 0 0 chr1 33109711 33109753 -164085679 + AT_rich Low_complexity Low_complexity 1 42 0 1 837 305 248 6 124 chr1 33110709 33110821 -164084611 + B1F SINE Alu 46 149 0 1 837 877 327 76 3 chr1 33111116 33111444 -164083988 - MLT1A0 LTR MaLR -7 358 7 1 837 385 300 211 14 chr1 33111532 33111887 -164083545 - L1MEg LINE L1 -5415 669 245 1 837 665 66 0 0 chr1 33112201 33112292 -164083140 - L1_Mm LINE L1 -4049 1834 1744 1 837 2168 16 0 0 chr1 33112292 33112549 -164082883 + L1Md_F2 LINE L1 5330 5586 -297 1 837 8012 48 7 1 chr1 33112549 33113538 -164081894 + L1Md_F2 LINE L1 5587 6581 -1 1 837 873 164 0 0 chr1 33113756 33113915 -164081517 + CT-rich Low_complexity Low_complexity 2 160 0 1 837 741 275 6 0 chr1 33115737 33115897 -164079535 + MTE2a LTR MaLR 218 378 -1 1 837 1348 70 21 11 chr1 33115965 33116152 -164079280 + B2_Mm2 SINE B2 1 189 -6 1 837 1616 230 8 67 chr1 33116307 33116694 -164078738 - ORR1B2 LTR MaLR 0 367 4 1 837 567 0 0 0 chr1 33116831 33116894 -164078538 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 837 182 210 0 156 chr1 33119170 33119266 -164076166 + L3 LINE CR1 920 1000 -3489 1 837 238 50 24 24 chr1 33120736 33120777 -164074655 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 1 837 3362 181 30 12 chr1 33120796 33121400 -164074032 - RLTR17 LTR ERVK -77 615 1 1 837 1721 194 12 32 chr1 33121400 33121509 -164073923 - RMER3D-int LTR ERVK 0 2842 2739 1 837 3573 18 0 0 chr1 33121509 33121905 -164073527 - MTA_Mm LTR MaLR 0 396 1 1 837 9157 36 2 1 chr1 33121905 33123002 -164072430 - MTA_Mm-int LTR MaLR 0 1098 1 1 837 3573 18 0 0 chr1 33123002 33123398 -164072034 - MTA_Mm LTR MaLR 0 396 1 1 837 1721 194 12 32 chr1 33123398 33123686 -164071746 - RMER3D-int LTR ERVK -104 2738 2453 1 837 353 226 29 0 chr1 33124203 33124305 -164071127 + L1_Mur3 LINE L1 827 931 -6781 1 837 689 139 28 9 chr1 33124305 33124414 -164071018 + RMER6C LTR ERVK 1 111 -579 1 837 536 139 0 0 chr1 33124398 33124477 -164070955 + MT2B LTR ERVL 181 259 -342 1 837 28080 117 26 14 chr1 33124501 33130859 -164064573 + L1_Mus1 LINE L1 212 6567 0 1 837 1434 45 0 0 chr1 33130859 33131037 -164064395 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 837 301 173 0 0 chr1 33131047 33131099 -164064333 + B1_Mur4 SINE Alu 15 66 -84 1 837 238 333 48 19 chr1 33131099 33131151 -164064281 + B4A SINE B4 99 205 -87 1 837 376 267 0 0 chr1 33131157 33131262 -164064170 + L1_Mur3 LINE L1 1055 1159 -6553 1 837 396 0 0 0 chr1 33131337 33131381 -164064051 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 837 632 77 0 11 chr1 33131381 33131473 -164063959 + (GGA)n Simple_repeat Simple_repeat 2 92 0 1 837 263 32 0 0 chr1 33131474 33131505 -164063927 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 837 354 286 143 14 chr1 33132324 33132459 -164062973 + L1M2 LINE L1 2528 2679 -3464 1 837 225 0 0 0 chr1 33132459 33132484 -164062948 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 837 354 286 143 14 chr1 33132484 33132642 -164062790 + L1M2 LINE L1 2680 2858 -3285 1 837 1689 189 48 23 chr1 33132644 33132998 -164062434 + MTC LTR MaLR 64 397 -24 1 837 4081 228 103 5 chr1 33133512 33134607 -164060825 - Lx9 LINE L1 -1 7643 6440 2 837 4658 50 7 8 chr1 33134607 33135192 -164060240 + L1Md_F2 LINE L1 5987 6570 -12 2 837 4081 228 103 5 chr1 33135192 33135241 -164060191 - Lx9 LINE L1 -1205 6439 6387 2 837 2470 216 15 78 chr1 33135249 33136099 -164059333 - L1_Rod LINE L1 -2084 3763 2967 2 837 25 51 0 0 chr1 33136489 33136528 -164058904 + AT_rich Low_complexity Low_complexity 1 39 0 2 837 21 89 0 0 chr1 33137817 33137873 -164057559 + AT_rich Low_complexity Low_complexity 1 56 0 2 837 1329 252 62 17 chr1 33137927 33138282 -164057150 + MTE2b LTR MaLR 1 371 -8 2 837 636 154 0 0 chr1 33138426 33138549 -164056883 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 837 1078 125 65 0 chr1 33138727 33138895 -164056537 + B2_Mm2 SINE B2 2 180 -15 2 837 531 270 126 50 chr1 33139230 33139468 -164055964 + RMER15 LTR ERVL 27 282 -293 2 837 380 254 110 40 chr1 33139441 33139667 -164055765 + RMER15 LTR ERVL 169 575 0 2 837 357 24 0 0 chr1 33139668 33139710 -164055722 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2 837 250 241 56 132 chr1 33139938 33140187 -164055245 + RMER17A LTR ERVK 197 426 -325 2 837 276 53 0 0 chr1 33140190 33140228 -164055204 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 837 207 0 0 0 chr1 33140228 33140251 -164055181 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 837 286 328 84 64 chr1 33141011 33141380 -164054052 + MLT1H LTR MaLR 71 496 -53 2 837 2863 198 46 3 chr1 33142157 33142519 -164052913 + Lx5 LINE L1 6361 6737 -313 2 837 414 0 0 0 chr1 33142519 33142565 -164052867 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 837 2863 198 46 3 chr1 33142565 33142791 -164052641 + Lx5 LINE L1 6738 6974 -76 2 837 762 93 0 0 chr1 33142882 33142990 -164052442 + (TTTCC)n Simple_repeat Simple_repeat 4 111 0 2 837 25 0 0 0 chr1 33143532 33143557 -164051875 + AT_rich Low_complexity Low_complexity 1 25 0 2 837 229 222 106 45 chr1 33143559 33143625 -164051807 + MTE2a LTR MaLR 16 85 -294 2 837 999 307 51 4 chr1 33145769 33146044 -164049388 + B4A SINE B4 1 288 -4 2 837 474 33 0 0 chr1 33146078 33146138 -164049294 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 837 1218 54 0 0 chr1 33146637 33146785 -164048647 + B1_Mus1 SINE Alu 1 148 0 2 837 2897 202 56 26 chr1 33147188 33148048 -164047384 - Lx4B LINE L1 -4 7054 6141 2 837 516 16 0 0 chr1 33148708 33148769 -164046663 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 837 559 39 26 0 chr1 33148769 33148847 -164046585 + (TCC)n Simple_repeat Simple_repeat 3 82 0 2 837 628 271 110 0 chr1 33149051 33149206 -164046226 + ID_B1 SINE B4 16 187 -37 2 837 243 258 109 82 chr1 33149123 33149233 -164046199 + PB1D7 SINE Alu 7 119 -1 2 837 2891 263 59 46 chr1 33149279 33150233 -164045199 - RCHARR1 DNA MER1_type 0 974 9 2 837 2992 55 10 25 chr1 33150983 33151376 -164044056 - L1_Mus1 LINE L1 0 6567 6181 2 837 1927 188 65 18 chr1 33151577 33151977 -164043455 + MTD LTR MaLR 1 419 0 2 837 31 26 0 0 chr1 33152424 33152462 -164042970 + AT_rich Low_complexity Low_complexity 1 38 0 2 837 282 294 68 34 chr1 33152726 33152874 -164042558 - MER67D LTR ERV1 -106 408 256 2 837 725 61 0 10 chr1 33153618 33153718 -164041714 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 837 405 217 39 0 chr1 33155259 33155353 -164040079 + PB1D10 SINE Alu 5 104 -13 2 837 556 117 136 30 chr1 33155364 33155496 -164039936 - Lx2 LINE L1 -2 6995 6850 2 837 613 320 82 27 chr1 33155591 33155883 -164039549 - RMER5 LTR ERV1 -21 513 206 2 837 254 186 0 0 chr1 33155959 33156002 -164039430 - RMER5 LTR ERV1 -479 55 13 2 837 930 133 0 0 chr1 33156143 33156293 -164039139 + (GAGAA)n Simple_repeat Simple_repeat 1 150 0 2 837 541 269 85 85 chr1 33156775 33157047 -164038385 + B4A SINE B4 2 273 -19 2 837 242 151 40 14 chr1 33157091 33157165 -164038267 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 837 486 161 18 6 chr1 33157178 33157347 -164038085 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 2 837 360 77 0 0 chr1 33157359 33157411 -164038021 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 837 306 175 12 24 chr1 33157428 33157510 -164037922 + (CATA)n Simple_repeat Simple_repeat 2 82 0 2 104 1420 254 98 71 chr1 33160844 33161505 -164033927 + RMER6C LTR ERVK 3 681 -9 2 838 25 65 0 0 chr1 33162248 33162294 -164033138 + AT_rich Low_complexity Low_complexity 1 46 0 2 838 3890 155 16 41 chr1 33162693 33163401 -164032031 - RLTR17 LTR ERVK -2 690 1 2 838 974 178 4 4 chr1 33163898 33164152 -164031280 + GA-rich Low_complexity Low_complexity 1 254 0 2 838 211 291 36 60 chr1 33164947 33165031 -164030401 - B1F SINE Alu 0 149 68 2 838 354 239 0 15 chr1 33164966 33165034 -164030398 - ID_B1 SINE B4 -15 209 143 2 838 255 271 51 0 chr1 33166666 33166725 -164028707 - ID_B1 SINE B4 -68 156 95 2 838 402 309 29 0 chr1 33167163 33167178 -164028254 - MER2 DNA MER2_type -108 237 223 2 838 396 0 0 0 chr1 33167178 33167222 -164028210 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 838 402 309 29 0 chr1 33167222 33167342 -164028090 - MER2 DNA MER2_type -123 222 99 2 838 400 202 53 11 chr1 33167740 33167835 -164027597 - RMER15 LTR ERVL -14 561 463 2 838 565 177 62 0 chr1 33167835 33167948 -164027484 + ORR1C1 LTR MaLR 1 120 -258 2 838 1002 277 0 0 chr1 33167936 33168131 -164027301 - B3 SINE B2 -21 195 1 2 838 1446 226 95 3 chr1 33170089 33170457 -164024975 - Lx9 LINE L1 -6 7638 7237 2 838 277 340 72 20 chr1 33170543 33170738 -164024694 - Tigger2b DNA MER2_type -152 574 370 2 838 331 312 26 68 chr1 33170744 33170861 -164024571 - B4A SINE B4 -154 138 27 2 838 349 254 22 189 chr1 33170825 33171005 -164024427 + B3 SINE B2 67 216 0 2 838 19778 8 0 3 chr1 33172123 33174340 -164021092 + L1_Mm LINE L1 3370 5586 -297 2 838 9024 2 0 0 chr1 33174340 33175336 -164020096 + L1Md_A LINE L1 5587 6582 0 2 838 19778 8 0 3 chr1 33175336 33175378 -164020054 + L1_Mm LINE L1 5587 5622 -261 2 838 2489 165 56 22 chr1 33175532 33176039 -164019393 - RLTR11A LTR ERVK 0 528 5 2 838 616 185 11 22 chr1 33176487 33176530 -164018902 + polypurine Low_complexity Low_complexity 1 43 0 2 838 1095 95 6 16 chr1 33176530 33176712 -164018720 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 838 616 185 11 22 chr1 33176712 33176850 -164018582 + GA-rich Low_complexity Low_complexity 44 179 0 2 838 225 209 0 0 chr1 33177215 33177282 -164018150 + (ATTAG)n Simple_repeat Simple_repeat 1 67 0 2 838 390 323 59 15 chr1 33177589 33177724 -164017708 + B1F SINE Alu 6 146 -3 2 838 324 222 49 19 chr1 33177731 33177831 -164017601 + ID4_ SINE ID 2 101 -51 2 838 4930 47 2 5 chr1 33178578 33179194 -164016238 + L1Md_F2 LINE L1 5969 6582 0 2 838 704 250 10 77 chr1 33179220 33179428 -164016004 + B3A SINE B2 2 195 -3 2 838 226 267 10 72 chr1 33179684 33179781 -164015651 + RLTR12A LTR ERVK 291 381 -187 2 838 316 296 483 41 chr1 33179862 33180056 -164015376 - B4A SINE B4 -11 281 2 2 838 192 310 58 39 chr1 33180579 33180683 -164014749 - MIRb SINE MIR -118 150 45 2 838 363 304 102 50 chr1 33182565 33182966 -164012466 - L1ME2 LINE L1 -152 6027 5619 2 838 240 338 88 50 chr1 33183165 33183324 -164012108 - MLT2B3 LTR ERVL -63 491 327 2 838 321 319 9 9 chr1 33183371 33183485 -164011947 + GA-rich Low_complexity Low_complexity 2 115 0 2 838 261 239 141 0 chr1 33183634 33183792 -164011640 - L1ME2 LINE L1 -622 5540 5360 2 838 799 138 7 7 chr1 33185411 33185564 -164009868 + CT-rich Low_complexity Low_complexity 2 154 0 2 838 821 322 14 29 chr1 33185848 33186196 -164009236 + L1MCb LINE L1 1 343 -5702 2 838 548 285 69 6 chr1 33186707 33186880 -164008552 + Tigger1 DNA MER2_type 2226 2409 -9 2 838 953 302 7 58 chr1 33186975 33187284 -164008148 + MTE-int LTR MaLR 1096 1388 -192 2 838 426 284 135 6 chr1 33187640 33187810 -164007622 + RMER15 LTR ERVL 371 562 -13 2 838 21 36 0 0 chr1 33188724 33188752 -164006680 + AT_rich Low_complexity Low_complexity 1 28 0 2 838 620 231 117 34 chr1 33189510 33189689 -164005743 - B3A SINE B2 -4 194 1 2 838 242 224 75 0 chr1 33189698 33189765 -164005667 - L1ME4a LINE L1 -58 6066 5995 2 838 21 0 0 0 chr1 33190877 33190898 -164004534 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 747 273 0 0 chr1 33190932 33191093 -164004339 - RSINE1 SINE B4 0 165 5 2 838 419 338 188 23 chr1 33191414 33191935 -164003497 + LTR33C LTR ERVL 23 629 0 2 838 225 0 0 0 chr1 33192079 33192104 -164003328 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 838 328 192 40 14 chr1 33192456 33192530 -164002902 + ORR1D2 LTR MaLR 1 76 -294 2 838 1818 275 83 42 chr1 33192539 33193329 -164002103 + Lx9 LINE L1 6795 7617 -27 2 838 23 33 0 0 chr1 33193361 33193391 -164002041 + AT_rich Low_complexity Low_complexity 1 30 0 2 838 183 247 48 144 chr1 33194144 33194248 -164001184 + MIRm SINE MIR 27 120 -156 2 838 259 329 11 34 chr1 33194404 33194492 -164000940 - MIRm SINE MIR 0 276 191 2 838 250 350 10 29 chr1 33194492 33194506 -164000926 - L2b LINE L2 -1 3373 3274 2 838 482 178 27 31 chr1 33194557 33194813 -164000619 + (TA)n Simple_repeat Simple_repeat 1 254 0 2 838 268 168 50 0 chr1 33194835 33194936 -164000496 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 838 666 237 40 0 chr1 33195396 33195548 -163999884 + RSINE1 SINE B4 7 164 -1 2 838 281 286 0 0 chr1 33195557 33195627 -163999805 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 838 1210 277 88 33 chr1 33195705 33196287 -163999145 + L1MB7 LINE L1 5453 6066 -118 2 838 25 0 0 0 chr1 33197393 33197418 -163998014 + AT_rich Low_complexity Low_complexity 1 25 0 2 838 387 241 172 0 chr1 33197630 33197771 -163997661 + L1_Mur3 LINE L1 2659 2821 -3056 2 838 284 0 0 27 chr1 33197838 33197875 -163997557 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 2 838 1484 313 50 14 chr1 33197879 33198740 -163996692 - L1_Mur3 LINE L1 -3533 2347 1456 2 838 286 261 0 13 chr1 33198783 33198872 -163996560 + L1_Mur3 LINE L1 3895 3985 -1862 2 838 482 328 136 0 chr1 33199864 33200041 -163995391 + MT2A LTR ERVL 333 533 0 3 838 2918 275 193 30 chr1 33200041 33200559 -163994873 + Lx8 LINE L1 3799 4357 -1523 3 838 279 0 0 0 chr1 33200559 33200590 -163994842 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 838 2918 274 157 29 chr1 33200590 33201903 -163993529 + Lx8 LINE L1 4358 5924 -1549 3 838 931 309 83 32 chr1 33202005 33202830 -163992602 + L1_Mur3 LINE L1 5049 5870 -10 2 838 225 289 22 29 chr1 33203318 33203457 -163991975 + A-rich Low_complexity Low_complexity 2 139 0 3 838 582 283 18 30 chr1 33203474 33203638 -163991794 + B3A SINE B2 36 197 -1 3 838 26 30 0 0 chr1 33203639 33203672 -163991760 + AT_rich Low_complexity Low_complexity 1 33 0 3 838 505 314 47 0 chr1 33204129 33204301 -163991131 + B3A SINE B2 4 183 -15 3 838 546 43 0 0 chr1 33204355 33204424 -163991008 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 838 769 242 69 29 chr1 33204783 33204987 -163990445 - B3 SINE B2 -3 213 2 3 838 243 0 0 0 chr1 33206239 33206266 -163989166 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 3 838 587 14 14 0 chr1 33206269 33206341 -163989091 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 3 838 842 143 0 7 chr1 33206347 33206495 -163988937 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 3 838 847 70 35 7 chr1 33206496 33206641 -163988791 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 3 838 3484 96 8 2 chr1 33207460 33207960 -163987472 + L1_Mus4 LINE L1 6133 6635 -1 3 838 1969 43 0 0 chr1 33208275 33208508 -163986924 - L1Md_F2 LINE L1 -182 5701 5469 3 838 6437 49 0 33 chr1 33208508 33209336 -163986096 + L1Md_F2 LINE L1 5768 6568 -14 3 838 21 0 0 0 chr1 33209336 33209357 -163986075 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 22 35 0 0 chr1 33209711 33209740 -163985692 + AT_rich Low_complexity Low_complexity 1 29 0 3 838 2339 197 44 40 chr1 33209947 33210277 -163985155 + Lx7 LINE L1 5006 5318 -562 3 838 669 25 0 0 chr1 33210277 33210356 -163985076 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 3 838 2339 197 44 40 chr1 33210356 33210596 -163984836 + Lx7 LINE L1 5319 5577 -303 3 838 1611 166 10 33 chr1 33210597 33210902 -163984530 - ORR1A4 LTR MaLR 0 329 32 3 838 203 0 0 36 chr1 33210960 33210988 -163984444 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 838 5368 85 34 1 chr1 33210992 33211738 -163983694 - L1_Mus4 LINE L1 -6 6630 5861 3 838 428 53 0 0 chr1 33211738 33211795 -163983637 - ORR1A4 LTR MaLR -272 57 1 3 838 3610 296 77 32 chr1 33211804 33212071 -163983361 + Lx7 LINE L1 5587 5856 -1604 3 838 465 66 0 0 chr1 33212071 33212132 -163983300 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 838 5353 246 60 14 chr1 33212132 33213496 -163981936 + Lx7 LINE L1 5857 7318 -378 3 838 324 0 0 0 chr1 33213557 33213593 -163981839 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 838 324 0 0 0 chr1 33213593 33213629 -163981803 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 838 325 187 52 52 chr1 33213700 33213796 -163981636 + Lx7 LINE L1 7596 7691 -5 3 838 580 287 122 5 chr1 33213890 33214079 -163981353 - B3 SINE B2 -5 211 1 3 838 24836 156 34 26 chr1 33214285 33215828 -163979604 + L1Md_F LINE L1 509 2016 -3867 3 838 1032 110 0 7 chr1 33215828 33215974 -163979458 + B1_Mus1 SINE Alu 2 146 -2 3 838 24836 114 16 32 chr1 33215974 33217029 -163978403 + L1Md_F LINE L1 2017 3006 -2877 3 838 189 0 0 0 chr1 33217029 33217050 -163978382 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 838 24836 114 16 32 chr1 33217050 33217218 -163978214 + L1Md_F LINE L1 3007 3173 -2710 3 838 234 62 0 0 chr1 33217218 33217250 -163978182 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 838 24836 114 16 32 chr1 33217250 33219385 -163976047 + L1Md_F LINE L1 3174 5305 -578 3 838 26646 52 13 4 chr1 33219380 33224730 -163970702 + L1Md_T LINE L1 130 5586 -297 3 838 8400 35 0 5 chr1 33224730 33225731 -163969701 + L1Md_T LINE L1 5587 6582 0 3 838 12728 29 35 0 chr1 33225731 33227381 -163968051 + L1_Mm LINE L1 2053 3759 -2124 3 838 1713 58 9 0 chr1 33227381 33227604 -163967828 + L1Md_A LINE L1 6356 6580 -2 3 838 3221 110 53 6 chr1 33227605 33228117 -163967315 + L1_Mm LINE L1 5294 5829 -54 3 838 3416 161 37 88 chr1 33228171 33228981 -163966451 - RMER17D2 LTR ERVK -15 794 26 3 838 5795 60 12 1 chr1 33228992 33229726 -163965706 + L1_Mus2 LINE L1 5823 6564 -2 3 838 693 275 36 52 chr1 33231126 33231318 -163964114 + B3A SINE B2 4 192 -3 3 838 414 0 0 0 chr1 33232335 33232381 -163963051 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 838 324 0 0 0 chr1 33232389 33232425 -163963007 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 838 380 300 15 77 chr1 33233239 33233369 -163962063 + RSINE1 SINE B4 43 164 -1 3 838 417 211 0 0 chr1 33233370 33233498 -163961934 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 838 503 337 85 73 chr1 33233680 33233919 -163961513 - LTR40a LTR ERVL -15 504 275 3 838 1039 75 15 0 chr1 33233919 33234053 -163961379 + B1_Mus1 SINE Alu 1 136 -12 3 838 503 337 85 73 chr1 33234053 33234189 -163961243 - LTR40a LTR ERVL -245 274 132 3 838 1679 145 56 122 chr1 33234189 33234581 -163960851 - ORR1B2 LTR MaLR 0 367 2 3 838 503 337 85 73 chr1 33234581 33234700 -163960732 - LTR40a LTR ERVL -388 131 3 3 838 452 305 0 37 chr1 33234768 33234877 -163960555 + PB1 SINE Alu 11 115 -12 3 838 576 232 225 11 chr1 33235486 33235647 -163959785 + B3 SINE B2 36 212 -4 3 838 3660 122 148 18 chr1 33235743 33236410 -163959022 + RMER6A LTR ERVK 3 756 0 3 838 667 321 93 93 chr1 33237264 33237782 -163957650 + MLT1F LTR MaLR 1 518 -30 3 838 258 56 0 0 chr1 33237898 33237934 -163957498 + (T)n Simple_repeat Simple_repeat 1 36 0 3 838 1256 34 0 0 chr1 33237936 33238083 -163957349 - B1_Mus1 SINE Alu 0 148 2 3 838 306 322 131 8 chr1 33238119 33238241 -163957191 + MLT1H2 LTR MaLR 1 137 -352 3 838 501 17 0 0 chr1 33238432 33238490 -163956942 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 3 838 211 224 0 26 chr1 33238981 33239059 -163956373 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 838 396 348 30 18 chr1 33239163 33239330 -163956102 + Charlie24 DNA MER1_type 371 539 -1911 3 838 6402 108 16 13 chr1 33239332 33241318 -163954114 + L1Md_F2 LINE L1 163 2154 -3729 3 838 5283 74 0 4 chr1 33241297 33242039 -163953393 + L1Md_F2 LINE L1 4848 5586 -297 3 838 7097 79 18 6 chr1 33242039 33243012 -163952420 + L1Md_F2 LINE L1 5587 6570 -12 3 838 612 296 288 20 chr1 33243047 33243589 -163951843 + Charlie24 DNA MER1_type 525 1211 -1239 3 838 2138 209 63 4 chr1 33243935 33244410 -163951022 + Lx2B LINE L1 6496 6998 -2 3 838 258 105 0 0 chr1 33244799 33244837 -163950595 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 3 838 903 136 14 0 chr1 33244889 33245036 -163950396 + URR1B DNA MER1_type 56 204 -21 3 838 217 294 148 8 chr1 33245494 33245635 -163949797 - MIRc SINE MIR -42 220 76 3 838 1145 294 66 63 chr1 33246631 33246754 -163948678 + MTE2a LTR MaLR 6 122 -297 3 838 1374 183 163 27 chr1 33246754 33246931 -163948501 - ORR1C2 LTR MaLR -1 383 190 3 838 360 0 0 0 chr1 33246931 33246971 -163948461 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 3 838 1374 183 163 27 chr1 33246971 33247130 -163948302 - ORR1C2 LTR MaLR -195 189 2 3 838 1145 269 40 43 chr1 33247130 33247416 -163948016 + MTE2a LTR MaLR 91 377 -2 3 838 189 264 27 40 chr1 33247419 33247494 -163947938 - L2 LINE L2 -810 2609 2536 3 838 203 0 37 0 chr1 33247921 33247948 -163947484 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 838 1393 257 94 9 chr1 33248279 33248620 -163946812 + MTD LTR MaLR 3 372 -47 3 838 287 260 13 13 chr1 33248617 33248695 -163946737 + LTR50 LTR ERVL 711 788 -7 3 838 483 178 11 43 chr1 33248838 33248932 -163946500 + U6 snRNA snRNA 2 92 -15 3 838 697 331 28 24 chr1 33248996 33249244 -163946188 + Tigger10 DNA Tigger 490 738 -1105 3 838 6811 77 23 18 chr1 33249514 33250500 -163944932 - L1Md_F2 LINE L1 -5 6577 5587 3 838 1526 43 27 0 chr1 33251832 33252020 -163943412 + B2_Mm1t SINE B2 1 193 0 3 838 245 165 63 42 chr1 33252281 33252376 -163943056 - Lx8 LINE L1 -29 7444 7348 3 838 1260 75 0 0 chr1 33252413 33252586 -163942846 + (GGAA)n Simple_repeat Simple_repeat 3 175 0 3 838 1033 276 69 34 chr1 33252658 33253037 -163942395 - Lx7 LINE L1 -425 7271 6880 3 838 21 0 0 0 chr1 33253167 33253188 -163942244 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 236 247 75 38 chr1 33253424 33253504 -163941928 + LTR40a LTR ERVL 127 209 -310 3 838 3167 92 15 0 chr1 33254948 33255426 -163940006 + L1_Mm LINE L1 5043 5527 -356 3 838 306 266 55 91 chr1 33255488 33255707 -163939725 + RMER10A LTR ERVL 207 417 -25 3 838 230 154 46 0 chr1 33255803 33255868 -163939564 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 838 182 106 58 43 chr1 33255911 33255980 -163939452 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 3 838 800 220 58 0 chr1 33256024 33256215 -163939217 + Lx6 LINE L1 7232 7433 -27 3 838 183 80 0 0 chr1 33256218 33256243 -163939189 + (TAA)n Simple_repeat Simple_repeat 3 27 0 3 838 226 337 0 0 chr1 33256475 33256558 -163938874 - LTR90B LTR LTR -708 88 6 3 838 858 70 0 0 chr1 33256660 33256774 -163938658 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 3 838 197 196 0 19 chr1 33256793 33256845 -163938587 + CT-rich Low_complexity Low_complexity 2 52 0 3 838 5256 150 51 8 chr1 33256880 33258257 -163937175 - Lx4B LINE L1 -750 6308 4864 3 838 2098 144 18 62 chr1 33259652 33260036 -163935396 - ORR1B1 LTR MaLR -8 386 20 3 838 293 179 220 28 chr1 33260070 33260179 -163935253 + Lx4B LINE L1 6929 7058 0 3 838 1018 250 59 67 chr1 33260214 33260587 -163934845 - ORR1D2 LTR MaLR 0 370 1 3 838 431 338 154 25 chr1 33260605 33260890 -163934542 + MER68 LTR ERVL 242 563 0 3 838 648 308 50 5 chr1 33260969 33261168 -163934264 + MLT1D LTR MaLR 265 472 -33 3 838 576 146 42 0 chr1 33261590 33261686 -163933746 + RLTR17 LTR ERVK 3 102 -590 3 838 189 0 0 0 chr1 33261686 33261707 -163933725 + (T)n Simple_repeat Simple_repeat 1 21 0 3 838 1012 86 50 0 chr1 33261707 33261847 -163933585 - B1_Mus2 SINE Alu 0 147 1 3 838 1151 152 16 5 chr1 33261847 33262032 -163933400 + RLTR17 LTR ERVK 89 275 -417 3 838 1146 162 76 31 chr1 33262030 33262253 -163933179 + RLTR17 LTR ERVK 460 692 0 3 838 361 215 50 12 chr1 33263574 33263654 -163931778 + U6 snRNA snRNA 1 83 -24 3 838 21 0 0 0 chr1 33264093 33264114 -163931318 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 954 302 70 57 chr1 33264739 33265108 -163930324 + MTEa LTR MaLR 5 378 -1 3 838 304 385 53 13 chr1 33266290 33266440 -163928992 + HAL1-3A_ME LINE L1 2283 2438 -420 3 838 219 190 0 23 chr1 33266440 33266483 -163928949 + GA-rich Low_complexity Low_complexity 1 42 0 3 838 257 271 46 23 chr1 33267019 33267106 -163928326 + MER77 LTR ERVL 1 89 -518 3 838 560 278 162 91 chr1 33267148 33267214 -163928218 + MER77 LTR ERVL 217 269 -338 3 838 2268 153 41 34 chr1 33267214 33267632 -163927800 - MTC LTR MaLR 0 421 1 3 838 560 278 162 91 chr1 33267632 33267917 -163927515 + MER77 LTR ERVL 270 593 -14 3 838 311 286 51 0 chr1 33267992 33268090 -163927342 - MER34 LTR ERV1 -65 477 375 4 838 244 341 114 14 chr1 33268418 33268629 -163926803 - L3 LINE CR1 -124 4365 4134 4 838 186 43 0 0 chr1 33268872 33268895 -163926537 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 838 244 271 14 14 chr1 33270997 33271068 -163924364 - MER5A1 DNA MER1_type -92 74 4 4 838 793 215 129 0 chr1 33272585 33272771 -163922661 + MT2A LTR ERVL 1 210 -323 4 838 337 221 0 0 chr1 33272775 33272843 -163922589 - MT2A LTR ERVL -355 178 111 4 838 356 260 27 0 chr1 33272981 33273054 -163922378 + MT2A LTR ERVL 281 355 -178 4 838 396 0 0 0 chr1 33273567 33273611 -163921821 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 838 1068 80 0 7 chr1 33273611 33273750 -163921682 - B1_Mus2 SINE Alu -9 138 1 4 838 339 85 0 0 chr1 33273816 33273863 -163921569 + (T)n Simple_repeat Simple_repeat 1 47 0 4 838 640 60 0 0 chr1 33273863 33273947 -163921485 - B1_Mur4 SINE Alu 0 150 67 4 838 371 279 216 0 chr1 33274059 33274170 -163921262 - MLT1A0 LTR MaLR -95 270 136 4 838 345 290 29 0 chr1 33274458 33274577 -163920855 - MLT1A0 LTR MaLR -286 122 1 4 838 675 264 5 75 chr1 33274929 33275079 -163920353 + B3 SINE B2 37 183 -33 4 838 866 51 25 0 chr1 33275079 33275197 -163920235 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 4 838 675 264 5 75 chr1 33275197 33275234 -163920198 + B3 SINE B2 184 211 -5 4 838 187 255 30 23 chr1 33275274 33275340 -163920092 + MIRc SINE MIR 3 69 -199 4 838 1168 75 0 0 chr1 33275408 33275554 -163919878 + B1_Mus1 SINE Alu 3 148 0 4 838 315 132 0 0 chr1 33275554 33275622 -163919810 + (A)n Simple_repeat Simple_repeat 1 68 0 4 838 787 254 135 0 chr1 33275810 33276003 -163919429 + RCHARR1 DNA MER1_type 3 221 -753 4 838 1891 149 39 21 chr1 33276014 33276349 -163919083 + Lx3C LINE L1 6633 6973 -3 4 838 231 272 0 11 chr1 33276659 33276752 -163918680 + Lx8 LINE L1 4388 4479 -1401 4 838 994 249 181 33 chr1 33276806 33276912 -163918520 - MTD LTR MaLR -31 388 260 4 838 1978 86 25 0 chr1 33276912 33277190 -163918242 + Lx2 LINE L1 6701 6985 -12 4 838 339 25 0 0 chr1 33277191 33277231 -163918201 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 838 994 249 181 33 chr1 33277231 33277459 -163917973 - MTD LTR MaLR -160 259 2 4 838 1457 292 69 39 chr1 33277462 33278644 -163916788 + Lx8 LINE L1 4529 5808 -72 4 838 2298 98 6 58 chr1 33279332 33279677 -163915755 - ORR1A2 LTR MaLR 0 327 1 4 838 183 327 167 36 chr1 33280514 33280736 -163914696 - L2 LINE L2 -518 2901 2651 4 838 1409 297 95 32 chr1 33281298 33282118 -163913314 + Lx8 LINE L1 5897 6768 -705 4 838 6830 70 28 18 chr1 33282135 33283447 -163911985 - L1_Mus2 LINE L1 -1 6565 5239 4 838 4916 107 17 19 chr1 33283444 33284322 -163911110 - MusHAL1 LINE L1 -1803 909 34 4 838 37096 30 3 12 chr1 33284305 33290533 -163904899 - L1Md_T LINE L1 0 6582 415 4 838 2868 179 9 20 chr1 33290527 33291263 -163904169 - L1Md_F LINE L1 -5816 1273 472 4 838 1041 345 89 7 chr1 33291248 33291855 -163903577 + Lx8 LINE L1 6744 7400 -73 4 838 190 263 88 50 chr1 33291967 33292047 -163903385 + MIRc SINE MIR 93 175 -93 4 839 361 157 18 81 chr1 33292618 33292729 -163902703 + L1MEc LINE L1 89 192 -6208 4 839 566 272 41 29 chr1 33293696 33293942 -163901490 - RLTR15 LTR ERVK -66 293 45 4 839 431 344 24 24 chr1 33294759 33294923 -163900509 + RSINE1 SINE B4 2 165 0 4 839 482 267 18 37 chr1 33294959 33295068 -163900364 + ID_B1 SINE B4 2 108 -116 4 839 343 344 40 8 chr1 33295073 33295199 -163900233 + B4A SINE B4 134 263 -29 4 839 355 242 0 0 chr1 33295281 33295347 -163900085 - ID_B1 SINE B4 -13 211 146 4 839 354 151 0 0 chr1 33296049 33296122 -163899310 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 839 250 378 0 0 chr1 33296212 33296286 -163899146 - ID4_ SINE ID -2 81 8 4 839 299 230 11 11 chr1 33296403 33296491 -163898941 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 839 444 292 11 17 chr1 33296565 33296746 -163898686 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 839 597 61 0 0 chr1 33296822 33296904 -163898528 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 839 629 248 0 29 chr1 33297078 33297215 -163898217 - RSINE1 SINE B4 -22 143 11 4 839 2941 158 2 24 chr1 33297843 33298382 -163897050 - RLTR11A2 LTR ERVK 0 527 1 4 839 486 297 76 8 chr1 33299041 33299160 -163896272 + RSINE1 SINE B4 9 135 -30 4 839 964 230 204 9 chr1 33299310 33299644 -163895788 + Lx9 LINE L1 7086 7484 -160 4 839 2283 135 60 16 chr1 33299644 33300028 -163895404 - MTB_Mm LTR MaLR 0 407 7 4 839 200 184 20 20 chr1 33300055 33300105 -163895327 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 4 839 558 182 25 25 chr1 33300106 33300269 -163895163 + Lx9 LINE L1 7480 7642 -2 4 839 605 316 62 69 chr1 33301273 33301579 -163893853 + RLTR26 LTR ERVK 97 400 -242 4 839 189 0 0 0 chr1 33302413 33302434 -163892998 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 839 228 312 85 21 chr1 33302447 33302588 -163892844 + L1MC LINE L1 5538 5687 -2195 4 839 239 353 156 0 chr1 33302700 33302873 -163892559 - L2a LINE L2 -158 3268 3069 4 839 229 284 0 15 chr1 33302873 33302941 -163892491 + ID_B1 SINE B4 75 141 -83 4 839 290 236 51 94 chr1 33302890 33303007 -163892425 + PB1 SINE Alu 11 122 -5 4 839 565 44 0 0 chr1 33305185 33305253 -163890179 + L1Md_F2 LINE L1 5519 5586 -297 4 839 7711 55 22 2 chr1 33305253 33306229 -163889203 + L1Md_F2 LINE L1 5587 6582 0 4 839 510 103 0 0 chr1 33306335 33306413 -163889019 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 839 709 260 49 43 chr1 33306904 33307089 -163888343 - B3A SINE B2 -12 186 1 4 839 39231 9 2 0 chr1 33307486 33313926 -163881506 - L1Md_A LINE L1 -1 6581 128 4 839 1079 137 10 10 chr1 33314139 33314338 -163881094 + L1_Mur3 LINE L1 4504 4702 -1178 4 839 2921 249 73 7 chr1 33314350 33315168 -163880264 + Lx7 LINE L1 6536 7407 -289 4 839 299 279 41 47 chr1 33315185 33315385 -163880047 + Lx7 LINE L1 7314 7680 -16 4 839 372 22 0 0 chr1 33315444 33315489 -163879943 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 4 839 750 116 20 7 chr1 33315521 33315668 -163879764 - L1_Mus3 LINE L1 -1 6637 6489 4 839 1196 312 60 27 chr1 33315680 33316699 -163878733 - L1_Rod LINE L1 -444 5436 4332 4 839 404 200 10 29 chr1 33319568 33319671 -163875761 + L1_Mur3 LINE L1 4388 4488 -1392 4 839 2748 239 12 35 chr1 33319668 33320330 -163875102 + RMER1C Other Other 693 1339 -3 4 839 786 214 41 32 chr1 33320332 33320578 -163874854 + L1_Mur3 LINE L1 4512 4759 -1121 4 839 2000 287 115 19 chr1 33320555 33321387 -163874045 + Lx7 LINE L1 5845 6756 -940 4 839 1268 171 24 0 chr1 33321387 33321598 -163873834 + URR1A DNA MER1_type 10 225 -1 4 839 2051 255 43 20 chr1 33321599 33322199 -163873233 + Lx7 LINE L1 6750 7363 -333 4 839 226 237 0 0 chr1 33323479 33323538 -163871894 + T-rich Low_complexity Low_complexity 1 59 0 4 839 253 312 25 0 chr1 33324144 33324224 -163871208 + Lx7 LINE L1 7213 7294 -402 4 839 300 27 0 0 chr1 33324311 33324348 -163871084 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 839 621 135 190 7 chr1 33324486 33324628 -163870804 + Lx2 LINE L1 6829 6996 -1 4 839 233 29 0 29 chr1 33324657 33324692 -163870740 + (TAA)n Simple_repeat Simple_repeat 1 34 0 4 839 225 0 0 0 chr1 33324943 33324968 -163870464 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 839 1266 155 18 18 chr1 33325766 33325989 -163869443 - URR1B DNA MER1_type 0 225 3 4 839 22 0 0 0 chr1 33326295 33326317 -163869115 + GC_rich Low_complexity Low_complexity 1 22 0 4 839 1225 281 29 16 chr1 33328377 33328685 -163866747 - MTE2a LTR MaLR 0 379 68 4 839 919 201 111 30 chr1 33328686 33328991 -163866441 + RMER19C LTR ERVK 1 318 -419 4 839 1844 231 95 11 chr1 33329009 33329768 -163865664 - Lx7 LINE L1 -1532 6164 5332 4 839 198 0 0 0 chr1 33329776 33329798 -163865634 + (T)n Simple_repeat Simple_repeat 1 22 0 4 839 9568 32 0 0 chr1 33329824 33331666 -163863766 - L1Md_T LINE L1 0 6582 4741 4 839 608 235 13 13 chr1 33331667 33331822 -163863610 + RMER19C LTR ERVK 271 425 -186 4 839 372 186 0 0 chr1 33331819 33331889 -163863543 + RMER19C LTR ERVK 542 611 0 4 839 297 214 56 28 chr1 33331889 33331959 -163863473 - MTE2a LTR MaLR -307 72 1 4 839 442 305 44 30 chr1 33332028 33332231 -163863201 - ERVL-B4-int LTR ERVL -5507 207 2 4 839 320 220 129 21 chr1 33333090 33333183 -163862249 - PB1D10 SINE Alu -5 112 10 4 839 991 204 29 10 chr1 33333359 33333567 -163861865 - URR1B DNA MER1_type -1 224 13 4 839 254 307 39 39 chr1 33333568 33333719 -163861713 + MER20B DNA MER1_type 519 669 -114 4 839 497 335 74 26 chr1 33333719 33333846 -163861586 - MTD LTR MaLR 0 419 282 4 839 3121 94 55 28 chr1 33333846 33334351 -163861081 - MURVY-LTR LTR ERV1 0 519 1 4 839 497 335 74 26 chr1 33334351 33334391 -163861041 - MTD LTR MaLR -138 281 243 4 839 189 0 0 0 chr1 33334391 33334412 -163861020 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 4 839 497 344 82 32 chr1 33334412 33334459 -163860973 - MTD LTR MaLR -177 242 182 4 839 210 37 0 0 chr1 33334459 33334486 -163860946 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 4 839 667 259 27 7 chr1 33334492 33334640 -163860792 - MTD LTR MaLR -190 229 79 4 839 918 239 14 14 chr1 33335426 33335642 -163859790 + B3 SINE B2 1 216 0 4 839 22 0 0 0 chr1 33336715 33336737 -163858695 + AT_rich Low_complexity Low_complexity 1 22 0 4 839 324 0 0 0 chr1 33336740 33336776 -163858656 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 839 1408 159 126 14 chr1 33337018 33337311 -163858121 - ORR1A3 LTR MaLR 0 326 1 4 839 821 200 35 0 chr1 33337482 33337627 -163857805 - B3A SINE B2 -44 154 5 4 839 763 211 10 135 chr1 33338245 33338453 -163856979 + B3A SINE B2 1 182 -16 4 839 597 28 0 0 chr1 33339148 33339219 -163856213 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 839 302 336 53 35 chr1 33339819 33339933 -163855499 + B1F SINE Alu 25 140 -9 4 839 320 293 0 0 chr1 33339941 33340016 -163855416 + ID4 SINE ID 3 77 -6 4 839 1102 208 20 0 chr1 33340061 33340263 -163855169 - B3 SINE B2 -10 206 1 4 839 535 344 103 106 chr1 33340941 33341319 -163854113 + MLT1H1-int LTR MaLR 10 428 -981 4 839 784 276 97 41 chr1 33341319 33341659 -163853773 - ORR1E LTR MaLR 0 359 1 4 839 535 344 103 106 chr1 33341659 33341729 -163853703 + MLT1H1-int LTR MaLR 429 485 -924 4 839 516 16 0 0 chr1 33341729 33341790 -163853642 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 839 535 344 103 106 chr1 33341790 33342068 -163853364 + MLT1H1-int LTR MaLR 486 721 -688 4 839 468 0 0 0 chr1 33342068 33342120 -163853312 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 839 535 344 103 106 chr1 33342120 33342267 -163853165 + MLT1H1-int LTR MaLR 722 882 -527 4 839 198 0 0 0 chr1 33342463 33342485 -163852947 + (A)n Simple_repeat Simple_repeat 1 22 0 5 839 331 317 39 79 chr1 33342485 33342663 -163852769 + MLT1H1 LTR MaLR 347 517 -38 4 839 520 175 11 28 chr1 33342693 33342875 -163852557 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 839 29 78 0 0 chr1 33342981 33343045 -163852387 + AT_rich Low_complexity Low_complexity 1 64 0 5 839 310 21 0 41 chr1 33343297 33343346 -163852086 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 839 283 118 35 33 chr1 33343350 33343411 -163852021 - B1_Mur1 SINE Alu 0 149 99 5 839 2738 59 9 0 chr1 33343672 33344011 -163851421 + ORR1A1 LTR MaLR 1 342 -4 5 839 946 221 111 93 chr1 33344015 33344359 -163851073 - ORR1D2 LTR MaLR -3 367 18 5 839 247 200 57 0 chr1 33346302 33346372 -163849060 - RMER17C LTR ERVK -150 260 187 5 839 293 333 17 61 chr1 33347874 33347989 -163847443 + MLT1H2 LTR MaLR 78 187 -302 5 839 266 297 132 111 chr1 33348248 33348727 -163846705 + RMER13A LTR ERVK 3 543 -84 5 839 283 192 0 27 chr1 33348727 33348802 -163846630 + C-rich Low_complexity Low_complexity 4 76 0 5 839 369 0 0 0 chr1 33349079 33349120 -163846312 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 5 839 467 282 17 8 chr1 33349701 33349819 -163845613 + ID_B1 SINE B4 9 127 -97 5 839 353 317 103 13 chr1 33349924 33350107 -163845325 + MIRb SINE MIR 10 208 -60 5 839 518 326 0 6 chr1 33350326 33350499 -163844933 + L1MA5 LINE L1 4794 4965 -1178 5 839 618 77 0 0 chr1 33350520 33350598 -163844834 + U6 snRNA snRNA 1 78 -29 5 839 477 313 42 24 chr1 33350599 33350971 -163844461 + L1MA5 LINE L1 4974 5365 -775 5 839 366 203 33 2 chr1 33351032 33351159 -163844273 + L1MA5 LINE L1 5693 5826 -54 5 839 6282 53 1 22 chr1 33351169 33351979 -163843453 + L1_Mus2 LINE L1 5762 6554 -12 5 839 351 0 0 0 chr1 33352030 33352069 -163843363 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 839 225 0 0 0 chr1 33352069 33352093 -163843339 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 839 693 66 0 0 chr1 33352196 33352287 -163843145 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 5 839 890 176 13 7 chr1 33352407 33352561 -163842871 + ORR1B2 LTR MaLR 213 367 0 5 839 1017 231 5 5 chr1 33353103 33353307 -163842125 - B3 SINE B2 -9 207 4 5 839 468 0 0 0 chr1 33353518 33353570 -163841862 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 839 22 35 0 0 chr1 33354318 33354347 -163841085 + AT_rich Low_complexity Low_complexity 1 29 0 5 839 1983 261 52 47 chr1 33354407 33355251 -163840181 + L1_Rod LINE L1 3702 4549 -1298 5 839 1791 328 55 10 chr1 33355422 33356434 -163838998 - Lx8 LINE L1 -158 7315 6258 5 839 38631 16 1 6 chr1 33356430 33362809 -163832623 - L1Md_A LINE L1 0 6582 237 5 839 306 67 0 0 chr1 33363208 33363253 -163832179 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 839 324 0 0 0 chr1 33363255 33363291 -163832141 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 839 28157 82 55 1 chr1 33363377 33368292 -163827140 + L1Md_F2 LINE L1 404 5586 -297 5 839 7570 62 8 4 chr1 33368292 33369272 -163826160 + L1Md_F2 LINE L1 5587 6570 -12 5 839 22 35 0 0 chr1 33369317 33369346 -163826086 + AT_rich Low_complexity Low_complexity 1 29 0 5 839 366 115 0 0 chr1 33369346 33369407 -163826025 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 839 905 317 3 63 chr1 33369412 33369698 -163825734 - B4 SINE B4 -23 269 1 5 839 204 40 0 0 chr1 33369750 33369775 -163825657 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 5 839 31 0 0 0 chr1 33369933 33369964 -163825468 + AT_rich Low_complexity Low_complexity 1 31 0 5 839 26 0 0 0 chr1 33371001 33371027 -163824405 + AT_rich Low_complexity Low_complexity 1 26 0 5 839 810 273 47 42 chr1 33371429 33371643 -163823789 + B3A SINE B2 1 215 -1 5 839 516 45 0 0 chr1 33371660 33371727 -163823705 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 839 395 221 42 0 chr1 33371840 33371935 -163823497 + Lx9 LINE L1 7372 7470 -174 5 839 13521 170 21 14 chr1 33373653 33374498 -163820934 + L1VL4 LINE L1 709 1557 -4329 5 839 5184 37 0 5 chr1 33374498 33375120 -163820312 + L1Md_T LINE L1 5964 6582 0 5 839 13521 156 13 11 chr1 33375120 33377383 -163818049 + L1VL4 LINE L1 1558 3822 -2064 5 839 783 282 110 27 chr1 33377400 33377882 -163817550 + L1_Rod LINE L1 5072 5657 -643 5 839 706 178 26 19 chr1 33378062 33378217 -163817215 + L1VL4 LINE L1 5160 5315 -571 5 839 583 248 0 0 chr1 33378518 33378671 -163816761 + L1M2 LINE L1 5670 5822 -475 5 839 1125 212 4 46 chr1 33378664 33378926 -163816506 - Lx6 LINE L1 -995 6465 6215 5 839 247 267 55 11 chr1 33378926 33379017 -163816415 + Lx8 LINE L1 5812 5906 -1567 5 839 1576 245 26 0 chr1 33379984 33380327 -163815105 + Lx6 LINE L1 6214 6565 -895 5 839 665 152 27 20 chr1 33380326 33380474 -163814958 + L1_Mur1 LINE L1 5159 5307 -579 5 839 1311 164 87 4 chr1 33380474 33380738 -163814694 + Lx3C LINE L1 6689 6974 -2 5 839 2921 52 0 16 chr1 33381765 33382136 -163813296 + RLTR10B2 LTR ERVK 1 365 0 5 839 651 286 37 21 chr1 33382753 33382942 -163812490 - MER20 DNA MER1_type -5 214 23 5 839 2462 124 0 0 chr1 33383297 33383685 -163811747 - L1_Mm LINE L1 -565 5318 4931 5 839 3308 95 0 0 chr1 33383683 33384165 -163811267 - L1_Mm LINE L1 -708 5175 4694 5 839 7260 73 5 0 chr1 33384163 33385404 -163810028 + L1_Mus1 LINE L1 5451 6567 0 5 839 247 239 0 0 chr1 33385591 33385637 -163809795 + C-rich Low_complexity Low_complexity 4 49 0 5 839 379 289 117 58 chr1 33385681 33385938 -163809494 - B4 SINE B4 -16 276 5 5 839 767 204 213 48 chr1 33386067 33386381 -163809051 + Lx9 LINE L1 7251 7616 -28 5 839 220 331 82 95 chr1 33386406 33386423 -163809009 + B4 SINE B4 69 83 -209 5 839 609 252 45 15 chr1 33386423 33386556 -163808876 + B1_Mus2 SINE Alu 1 137 -10 5 839 213 182 0 0 chr1 33386564 33386597 -163808835 + (CACG)n Simple_repeat Simple_repeat 3 35 0 5 839 786 244 14 18 chr1 33386603 33386824 -163808608 - Lx7 LINE L1 -348 7348 7129 5 839 508 289 58 49 chr1 33388812 33389145 -163806287 + RLTR16 LTR ERVK 48 433 -259 5 839 1192 141 129 31 chr1 33389604 33389735 -163805697 + Lx LINE L1 6373 6535 -119 5 839 204 40 0 0 chr1 33389735 33389760 -163805672 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 839 1192 141 129 31 chr1 33389760 33389884 -163805548 + Lx LINE L1 6536 6653 -1 5 839 210 105 0 0 chr1 33389923 33389961 -163805471 + (A)n Simple_repeat Simple_repeat 1 38 0 5 839 1603 26 5 5 chr1 33390595 33390786 -163804646 - B2_Mm1a SINE B2 -1 192 2 5 839 246 329 86 20 chr1 33391051 33391203 -163804229 - L2 LINE L2 -791 2628 2467 5 839 21 0 0 0 chr1 33391265 33391286 -163804146 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 1079 289 76 17 chr1 33393027 33393382 -163802050 + Lx8 LINE L1 6891 7266 -207 5 839 283 269 155 27 chr1 33393913 33394100 -163801332 + Lx8 LINE L1 7258 7468 -5 5 839 520 283 50 53 chr1 33394309 33394608 -163800824 + Lx7 LINE L1 5532 5862 -1834 5 839 259 228 96 16 chr1 33394769 33394894 -163800538 - Lx7 LINE L1 0 7473 7339 5 839 1075 244 135 31 chr1 33394882 33395353 -163800079 + Lx5 LINE L1 6494 7053 -5 5 839 3436 280 74 28 chr1 33395399 33397175 -163798257 - Lx7 LINE L1 -361 7335 5412 5 839 2833 192 150 45 chr1 33397145 33398085 -163797347 - Lx7 LINE L1 -3092 2788 1750 5 839 848 309 50 14 chr1 33398479 33398843 -163796589 + L1_Mur3 LINE L1 122 498 -7230 5 839 1552 164 6 0 chr1 33398840 33399175 -163796257 + L1_Mur3 LINE L1 1042 1378 -4502 5 839 649 298 24 20 chr1 33399204 33399502 -163795930 + L1VL2 LINE L1 96 394 -5941 5 839 28455 114 18 17 chr1 33399529 33405715 -163789717 + L1_Mus2 LINE L1 357 6565 -1 5 839 360 246 139 43 chr1 33406855 33406970 -163788462 - B4 SINE B4 -74 218 93 5 839 435 95 0 0 chr1 33406971 33407045 -163788387 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 839 259 240 64 119 chr1 33407045 33407154 -163788278 - PB1D7 SINE Alu -1 119 17 5 839 224 305 0 0 chr1 33407730 33407789 -163787643 + (CATATA)n Simple_repeat Simple_repeat 3 61 0 5 839 264 304 23 102 chr1 33407932 33408060 -163787372 - LTR33 LTR ERVL -95 420 303 5 839 1454 189 77 0 chr1 33408105 33408402 -163787030 + MTD LTR MaLR 84 403 -16 5 839 1226 231 37 94 chr1 33408437 33409112 -163786320 + MTD-int LTR MaLR 29 1243 -549 5 839 314 61 20 0 chr1 33409128 33409177 -163786255 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 839 1530 227 87 22 chr1 33409186 33409555 -163785877 + MTD LTR MaLR 26 418 -1 5 839 266 362 34 17 chr1 33409582 33409700 -163785732 - LTR33 LTR ERVL -370 145 26 5 839 330 278 44 0 chr1 33409770 33409860 -163785572 - L1M5 LINE L1 -439 5801 5708 5 839 330 26 0 0 chr1 33410216 33410255 -163785177 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 839 369 93 0 0 chr1 33410595 33410649 -163784783 + (CCTG)n Simple_repeat Simple_repeat 2 55 0 5 839 489 17 0 0 chr1 33410692 33410750 -163784682 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 839 287 247 0 13 chr1 33410834 33410912 -163784520 - Lx9 LINE L1 -609 7035 6959 5 839 194 280 40 0 chr1 33410949 33410999 -163784433 - MIR3 SINE MIR -1 207 156 5 839 381 309 100 11 chr1 33411002 33411182 -163784250 + MER58A DNA MER1_type 1 196 -28 5 839 188 220 16 63 chr1 33411207 33411270 -163784162 - MIR SINE MIR -94 114 55 5 839 2275 158 145 43 chr1 33411628 33412159 -163783273 - RMER4B LTR ERVK 0 585 1 5 839 249 288 86 23 chr1 33414123 33414251 -163781181 - Charlie4a DNA MER1_type -5 503 368 5 839 330 284 73 0 chr1 33414533 33414642 -163780790 + PB1D10 SINE Alu 1 117 0 5 839 306 291 247 50 chr1 33414666 33414945 -163780487 - HAL1-3A_ME LINE L1 -467 2391 2058 5 839 231 349 101 27 chr1 33416711 33417047 -163778385 - L1M3e LINE L1 -6661 369 9 5 839 264 315 0 0 chr1 33417140 33417229 -163778203 + L1MB8 LINE L1 5704 5792 -386 5 839 1054 254 32 25 chr1 33417243 33417526 -163777906 + B4A SINE B4 8 292 0 5 839 278 258 32 0 chr1 33417556 33417649 -163777783 + L1MB8 LINE L1 5844 5939 -239 5 839 312 70 0 0 chr1 33418549 33418592 -163776840 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 839 557 332 138 5 chr1 33418616 33418819 -163776613 - B4A SINE B4 -20 272 43 5 839 480 232 18 21 chr1 33418860 33418982 -163776450 - PB1D10 SINE Alu -23 126 1 5 839 492 132 0 0 chr1 33420896 33420979 -163774453 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 839 462 18 0 0 chr1 33421022 33421077 -163774355 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 839 484 315 87 0 chr1 33421265 33421392 -163774040 + RSINE1 SINE B4 3 140 -25 6 839 237 33 0 0 chr1 33421407 33421437 -163773995 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 839 449 84 14 0 chr1 33421440 33421511 -163773921 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 6 839 528 272 0 9 chr1 33421920 33422035 -163773397 + B3 SINE B2 1 114 -102 6 839 336 327 119 75 chr1 33422059 33422269 -163773163 + L1MA4A LINE L1 1496 1704 -4462 6 839 1131 83 14 0 chr1 33422269 33422414 -163773018 + B1_Mus2 SINE Alu 1 147 0 6 839 336 327 119 75 chr1 33422414 33422436 -163772996 + L1MA4A LINE L1 1705 1725 -4441 6 839 1311 64 41 0 chr1 33422436 33422608 -163772824 + B2_Mm1a SINE B2 1 179 -14 6 839 336 327 119 75 chr1 33422608 33422989 -163772443 + L1MA4A LINE L1 1726 2137 -4029 6 839 213 273 36 18 chr1 33423122 33423178 -163772254 + ID4 SINE ID 4 60 -23 6 840 333 0 0 0 chr1 33423461 33423498 -163771934 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 840 1465 213 102 9 chr1 33423976 33424308 -163771124 + ORR1D2 LTR MaLR 8 370 0 6 840 885 284 33 61 chr1 33424654 33425033 -163770399 - MTE2a-int LTR MaLR -924 334 1 6 840 261 238 35 76 chr1 33425033 33425155 -163770277 - MTE2a LTR MaLR 0 379 251 6 840 559 307 23 8 chr1 33425169 33425425 -163770007 + L1M2 LINE L1 4766 5025 -1118 6 840 1741 154 10 14 chr1 33425434 33425731 -163769701 + ORR1D1 LTR MaLR 1 296 -78 6 840 341 271 75 1 chr1 33425746 33425932 -163769500 + L1MA4A LINE L1 5083 5345 -801 6 840 324 0 0 0 chr1 33425934 33425970 -163769462 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 840 506 106 35 0 chr1 33425975 33426060 -163769372 + (GGAGAA)n Simple_repeat Simple_repeat 3 90 0 6 840 399 259 0 0 chr1 33426120 33426201 -163769231 + B3 SINE B2 2 82 -134 6 840 528 16 0 0 chr1 33426203 33426264 -163769168 + (TTTTA)n Simple_repeat Simple_repeat 4 64 0 6 840 1200 63 11 17 chr1 33426266 33426445 -163768987 - L1_Mus3 LINE L1 -14 6624 6447 6 840 3375 47 0 0 chr1 33426445 33426872 -163768560 + L1_Mus3 LINE L1 6033 6459 -179 6 840 713 293 91 9 chr1 33426984 33427438 -163767994 + L1MA4A LINE L1 5417 5907 -396 6 840 679 52 10 10 chr1 33430623 33430699 -163764733 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 6 840 1169 106 0 6 chr1 33430699 33430880 -163764552 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 840 679 52 10 10 chr1 33430880 33430900 -163764532 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 6 840 238 255 48 48 chr1 33430965 33431068 -163764364 + L1_Rod LINE L1 2131 2233 -3614 6 840 232 267 66 41 chr1 33431096 33431217 -163764215 + L1M3 LINE L1 4031 4154 -1986 6 840 258 279 127 6 chr1 33431223 33431389 -163764043 + L1_Rod LINE L1 4195 4380 -1467 6 840 1252 251 64 73 chr1 33431433 33431919 -163763513 + MT2B LTR ERVL 1 540 -61 6 840 1157 57 17 17 chr1 33432071 33432251 -163763181 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 840 323 280 85 60 chr1 33433237 33433438 -163761994 + L1MDa LINE L1 1261 1466 -5167 6 840 234 135 0 37 chr1 33433683 33433737 -163761695 + (TTTG)n Simple_repeat Simple_repeat 4 55 0 6 840 1071 314 92 27 chr1 33433737 33434410 -163761022 + Lx8 LINE L1 6755 7471 -2 6 840 234 326 22 22 chr1 33434525 33434660 -163760772 - L1MEc LINE L1 -3329 2691 2557 6 840 1869 242 54 0 chr1 33434660 33435048 -163760384 + MTD LTR MaLR 1 409 -10 6 840 631 297 50 10 chr1 33435048 33435410 -163760022 - L1MEc LINE L1 -3465 2555 2186 6 840 576 77 0 0 chr1 33435516 33435594 -163759838 + (TTTA)n Simple_repeat Simple_repeat 2 79 0 6 840 10494 157 50 16 chr1 33435609 33437006 -163758426 - Lx4B LINE L1 -38 7020 5589 6 840 333 0 0 0 chr1 33437006 33437043 -163758389 + (TTA)n Simple_repeat Simple_repeat 3 39 0 6 840 3164 83 28 17 chr1 33437043 33437488 -163757944 - L1_Mus3 LINE L1 -17 6621 6171 6 840 5108 104 9 72 chr1 33437488 33438345 -163757087 - RLTR13B4 LTR ERVK 0 803 1 6 840 3164 83 28 17 chr1 33438345 33438364 -163757068 - L1_Mus3 LINE L1 -468 6170 6152 6 840 10494 131 80 8 chr1 33438364 33439211 -163756221 - Lx4B LINE L1 -289 5588 4640 6 840 219 88 0 0 chr1 33439211 33439245 -163756187 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 840 10494 131 80 8 chr1 33439245 33440042 -163755390 - Lx4B LINE L1 -1238 4639 3806 6 840 616 285 43 68 chr1 33440058 33440557 -163754875 + L1_Mur3 LINE L1 4202 4676 -1464 6 840 761 110 0 0 chr1 33440641 33440759 -163754673 - MusHAL1 LINE L1 -1586 1126 1009 6 840 3470 147 72 27 chr1 33440760 33441730 -163753702 + RLTR13D1 LTR ERVK 1 1023 0 6 840 6597 69 13 14 chr1 33441731 33442419 -163753013 - L1VL2 LINE L1 -1700 1915 1227 6 840 5019 156 59 31 chr1 33442419 33443414 -163752018 + RLTR13D2 LTR ERVK 1 1023 0 6 840 6597 86 16 7 chr1 33443414 33444420 -163751012 - L1VL2 LINE L1 -2389 1226 210 6 840 12536 166 63 10 chr1 33444420 33445711 -163749721 - L1VL4 LINE L1 -2064 3822 2495 6 840 372 22 0 0 chr1 33445711 33445756 -163749676 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 840 12536 166 63 10 chr1 33445756 33446170 -163749262 - L1VL4 LINE L1 -3392 2494 2056 6 840 356 0 23 0 chr1 33446170 33446214 -163749218 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 840 12536 176 47 8 chr1 33446214 33447337 -163748095 - L1VL4 LINE L1 -3831 2055 857 6 840 514 249 137 19 chr1 33447378 33447635 -163747797 - L1_Rod LINE L1 -3930 1917 1624 6 840 787 293 68 24 chr1 33447639 33448020 -163747412 + Lx8 LINE L1 5043 5440 -407 6 840 1179 238 21 31 chr1 33448042 33448333 -163747099 - MTD LTR MaLR 0 419 132 6 840 485 238 60 114 chr1 33448856 33449022 -163746410 - MTD LTR MaLR -260 159 3 6 840 307 214 0 14 chr1 33449023 33449094 -163746338 + L1M2 LINE L1 5544 5613 -699 6 840 526 244 16 25 chr1 33449099 33449221 -163746211 + B1_Mus1 SINE Alu 13 133 -15 6 840 2533 164 47 2 chr1 33449222 33449625 -163745807 - MTC LTR MaLR 0 421 1 6 840 2941 273 42 45 chr1 33449638 33450705 -163744727 + Lx8 LINE L1 5588 6667 -806 6 840 468 0 0 0 chr1 33450705 33450757 -163744675 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 840 2941 288 43 54 chr1 33450757 33450862 -163744570 + Lx8 LINE L1 6668 6782 -691 6 840 391 293 98 26 chr1 33450862 33451055 -163744377 + Charlie13b DNA Charlie 147 353 -159 6 840 207 214 0 0 chr1 33452472 33452514 -163742918 + A-rich Low_complexity Low_complexity 1 42 0 6 840 430 296 74 33 chr1 33452987 33453322 -163742110 + Lx7 LINE L1 7146 7676 -20 6 840 936 259 40 0 chr1 33453347 33453548 -163741884 + B3 SINE B2 2 210 -6 6 840 212 88 105 0 chr1 33453585 33453642 -163741790 + (TTAA)n Simple_repeat Simple_repeat 3 65 0 6 840 378 0 0 0 chr1 33453725 33453767 -163741665 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 840 792 293 97 35 chr1 33454021 33454332 -163741100 - Lx8 LINE L1 -669 6804 6475 6 840 534 332 61 47 chr1 33454368 33454665 -163740767 + L2a LINE L2 2065 2365 -1054 6 840 266 380 48 22 chr1 33455103 33455332 -163740100 + L2a LINE L2 2933 3167 -259 6 840 213 300 150 0 chr1 33455373 33455473 -163739959 + L2a LINE L2 3298 3412 -14 6 840 3128 134 29 17 chr1 33455543 33456065 -163739367 - RLTR31B_Mm LTR ERVK 0 557 30 6 840 402 74 0 0 chr1 33456165 33456219 -163739213 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 840 262 197 16 32 chr1 33456525 33456588 -163738844 + L1MC LINE L1 5741 5802 -2080 6 840 3161 111 85 28 chr1 33457155 33457832 -163737600 + MTB-int LTR MaLR 528 1538 -425 6 840 3126 77 31 3 chr1 33457834 33458223 -163737209 + MTB LTR MaLR 1 400 0 6 840 199 383 28 28 chr1 33458235 33458380 -163737052 - L2 LINE L2 -560 2859 2715 6 840 247 278 22 22 chr1 33459023 33459115 -163736317 + Charlie2b DNA MER1_type 919 1010 -1772 6 840 423 320 80 67 chr1 33459355 33459716 -163735716 + Charlie2b DNA MER1_type 1343 1708 -1074 6 840 238 304 216 78 chr1 33459959 33460227 -163735205 + ORR1E LTR MaLR 55 359 0 6 840 1813 301 104 96 chr1 33460233 33460790 -163734642 - L1M4b LINE L1 -1807 5193 4763 6 840 4192 49 0 36 chr1 33460790 33461295 -163734137 - L1Md_F2 LINE L1 -12 6570 6084 6 840 1813 301 104 96 chr1 33461295 33462620 -163732812 - L1M4b LINE L1 -2238 4762 3295 6 840 273 226 79 56 chr1 33462856 33462945 -163732487 - L1M4b LINE L1 -4926 2408 2318 6 840 3461 73 21 2 chr1 33462946 33463383 -163732049 - L1Md_F2 LINE L1 -2 6580 6136 6 840 1266 55 6 0 chr1 33463384 33463548 -163731884 + L1_Mm LINE L1 5233 5397 -486 6 840 1686 115 15 15 chr1 33463554 33463818 -163731614 + L1VL1 LINE L1 3 266 -6156 6 840 2784 139 64 0 chr1 33463818 33464270 -163731162 + L1Md_F LINE L1 383 863 -5656 6 840 36233 35 2 0 chr1 33464266 33470719 -163724713 + L1Md_T LINE L1 1 5589 -297 6 840 9514 8 0 0 chr1 33470719 33471715 -163723717 + L1Md_T LINE L1 5590 6585 0 6 840 34235 78 13 8 chr1 33471715 33476873 -163718559 + L1Md_F2 LINE L1 968 6138 -444 6 840 317 261 68 0 chr1 33476871 33476959 -163718473 - L1M4c LINE L1 -4328 2521 2428 6 840 400 181 70 19 chr1 33477160 33477318 -163718114 + (TCTA)n Simple_repeat Simple_repeat 1 166 0 6 840 337 314 102 25 chr1 33477373 33477530 -163717902 - L1M4c LINE L1 -5017 1833 1665 6 840 656 316 50 44 chr1 33477700 33477998 -163717434 - MLT1D LTR MaLR -7 498 199 6 840 221 348 122 40 chr1 33478428 33478730 -163716702 + L2 LINE L2 2062 2388 -1031 6 840 852 94 9 0 chr1 33479577 33479683 -163715749 + U6 snRNA snRNA 1 107 0 6 840 1451 259 80 128 chr1 33479693 33479857 -163715575 + RLTR22_Mur LTR ERVK 16 160 -1688 6 840 2541 119 3 3 chr1 33479857 33480212 -163715220 + L1_Mus4 LINE L1 6281 6635 -1 6 840 1451 259 80 128 chr1 33480212 33480869 -163714563 + RLTR22_Mur LTR ERVK 161 798 -1050 6 840 819 252 55 62 chr1 33480864 33481139 -163714293 + RMER12 LTR ERVK 1050 1322 0 6 840 8523 40 5 2 chr1 33481362 33482334 -163713098 + L1Md_F2 LINE L1 5604 6578 -4 6 840 21 89 0 0 chr1 33482334 33482390 -163713042 + AT_rich Low_complexity Low_complexity 1 56 0 6 840 4612 100 16 2 chr1 33482541 33483647 -163711785 + L1Md_Gf LINE L1 742 1960 -3926 6 840 371 280 44 60 chr1 33483675 33483972 -163711460 - L1MA4A LINE L1 -277 6014 5728 6 840 310 310 96 16 chr1 33484194 33484443 -163710989 - L1M2 LINE L1 -3583 3262 2994 6 840 910 301 68 29 chr1 33484549 33485110 -163710322 - L1M2 LINE L1 -3996 2853 2271 6 840 279 0 0 0 chr1 33485211 33485242 -163710190 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 840 494 217 0 11 chr1 33485245 33485427 -163710005 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 840 34055 91 9 8 chr1 33485692 33492076 -163703356 - L1Md_F2 LINE L1 -6 6576 184 6 840 2184 192 55 12 chr1 33492727 33493128 -163702304 + MTC LTR MaLR 1 418 -3 6 840 500 311 48 58 chr1 33494066 33494442 -163700990 - L1M2 LINE L1 -3604 3241 2870 6 840 825 107 0 0 chr1 33494525 33494647 -163700785 + (TTTC)n Simple_repeat Simple_repeat 1 122 0 6 840 465 306 35 71 chr1 33494852 33495005 -163700427 + RSINE1 SINE B4 3 150 -15 6 840 369 0 0 0 chr1 33495005 33495046 -163700386 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 840 465 306 35 71 chr1 33495046 33495061 -163700371 + RSINE1 SINE B4 151 165 0 6 840 258 213 0 0 chr1 33495317 33495364 -163700068 - L1MEf LINE L1 -4617 1583 1537 6 840 237 297 60 38 chr1 33495358 33495491 -163699941 - L1M2 LINE L1 -4325 2524 2389 6 840 406 284 15 73 chr1 33495920 33496057 -163699375 - RSINE1 SINE B4 -25 140 12 6 840 24032 77 14 3 chr1 33496105 33500000 -163695432 - L1Md_F2 LINE L1 0 6582 2649 6 840 10270 71 14 23 chr1 33500000 33500322 -163695110 - L1Md_F LINE L1 -3235 2648 2311 1 840 1811 33 0 0 chr1 33500322 33500535 -163694897 + L1Md_T LINE L1 6369 6581 -1 2 840 10270 90 37 22 chr1 33500535 33502442 -163692990 - L1Md_F LINE L1 -3573 2310 392 1 840 279 151 69 51 chr1 33502673 33502756 -163692676 - B1F SINE Alu 0 149 24 3 840 252 0 0 0 chr1 33502805 33502833 -163692599 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 840 275 328 22 36 chr1 33503320 33503459 -163691973 - L1M3e LINE L1 -6693 337 201 5 840 303 361 79 9 chr1 33503529 33503758 -163691674 - L1M3e LINE L1 -6739 291 47 5 840 1981 153 98 0 chr1 33504092 33504451 -163690981 + ORR1B1 LTR MaLR 1 394 0 6 840 734 148 8 0 chr1 33504451 33504579 -163690853 + ORR1B2 LTR MaLR 236 364 -3 7 840 757 238 222 35 chr1 33504698 33505099 -163690333 - L1MD LINE L1 -2206 3940 3465 8 840 312 211 0 0 chr1 33505099 33505170 -163690262 + (TA)n Simple_repeat Simple_repeat 2 72 0 9 840 378 295 27 0 chr1 33505289 33505401 -163690031 + MER58B DNA MER1_type 191 305 -36 1 840 232 312 124 10 chr1 33506416 33506513 -163688919 + PB1D10 SINE Alu 1 108 -9 1 840 210 309 140 0 chr1 33506809 33506945 -163688487 - MIR SINE MIR -34 228 74 1 840 3196 136 52 45 chr1 33506974 33507568 -163687864 - Lx2B LINE L1 -3 6997 6400 1 840 451 316 129 5 chr1 33508439 33508633 -163686799 - MER20 DNA MER1_type -1 218 1 1 840 1036 156 21 11 chr1 33509063 33509251 -163686181 - B2_Mm2 SINE B2 -5 190 1 1 840 360 0 0 0 chr1 33510392 33510432 -163685000 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 1 840 199 162 0 0 chr1 33512132 33512169 -163683263 - L2b LINE L2 -10 3365 3329 1 840 284 333 0 20 chr1 33512708 33512806 -163682626 - PB1D10 SINE Alu -21 96 1 1 840 207 0 0 0 chr1 33513618 33513641 -163681791 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 840 21 0 0 0 chr1 33513727 33513748 -163681684 + AT_rich Low_complexity Low_complexity 1 21 0 2 840 189 274 53 27 chr1 33513913 33513988 -163681444 - MIR SINE MIR -116 146 70 2 840 805 266 79 14 chr1 33514011 33514301 -163681131 + L1MA4 LINE L1 5622 5930 -370 2 840 459 217 267 35 chr1 33514608 33514780 -163680652 - B3 SINE B2 -4 212 1 2 840 500 91 23 5 chr1 33515040 33515147 -163680285 - B1_Mus2 SINE Alu 0 150 41 2 840 268 326 100 14 chr1 33515328 33515468 -163679964 + Tigger13a DNA MER2_type 479 630 -141 2 840 254 188 86 14 chr1 33516145 33516215 -163679217 - MTE2b LTR MaLR -18 361 287 2 840 289 361 24 38 chr1 33516473 33516683 -163678749 - L2 LINE L2 -521 2898 2692 2 840 705 130 9 9 chr1 33516930 33517046 -163678386 + B3 SINE B2 1 116 -100 2 840 337 278 31 10 chr1 33517750 33517848 -163677584 + ID_B1 SINE B4 96 195 -29 2 840 264 327 57 19 chr1 33517755 33517861 -163677571 + B1F SINE Alu 20 129 -20 3 840 216 182 0 0 chr1 33518128 33518172 -163677260 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 840 1828 222 81 25 chr1 33518244 33518761 -163676671 + RMER15 LTR ERVL 27 572 -3 3 840 1275 155 56 0 chr1 33520313 33520526 -163674906 - URR1B DNA MER1_type 0 225 1 3 840 322 282 87 0 chr1 33520561 33520664 -163674768 + MER58B DNA MER1_type 214 325 -16 3 840 1136 65 7 0 chr1 33521003 33521157 -163674275 + (GGGAGA)n Simple_repeat Simple_repeat 3 157 0 3 840 21 0 0 0 chr1 33521768 33521789 -163673643 + AT_rich Low_complexity Low_complexity 1 21 0 3 840 835 291 40 9 chr1 33523883 33524086 -163671346 - Lx9 LINE L1 -182 7462 7252 3 840 369 0 0 0 chr1 33524086 33524127 -163671305 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 840 835 291 40 9 chr1 33524127 33524246 -163671186 - Lx9 LINE L1 -393 7251 7132 3 840 21 36 0 0 chr1 33525914 33525942 -163669490 + AT_rich Low_complexity Low_complexity 1 28 0 3 840 467 297 29 0 chr1 33526711 33526849 -163668583 - Lx7 LINE L1 -425 7271 7130 4 840 336 296 34 0 chr1 33526881 33526969 -163668463 - B1F1 SINE Alu -55 94 4 4 840 470 297 7 48 chr1 33527953 33528098 -163667334 - RSINE1 SINE B4 -23 142 4 4 840 600 53 0 0 chr1 33528783 33528859 -163666573 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 840 30 59 0 0 chr1 33529937 33529988 -163665444 + AT_rich Low_complexity Low_complexity 1 51 0 4 840 345 239 103 5 chr1 33530232 33530417 -163665015 - MER33 DNA MER1_type -41 283 81 4 840 248 237 0 0 chr1 33530756 33530815 -163664617 + L1MB5 LINE L1 1369 1427 -5907 4 840 267 332 56 56 chr1 33531165 33531414 -163664018 + L1MB5 LINE L1 4595 4843 -2157 4 840 1301 307 72 25 chr1 33531825 33532509 -163662923 + L1MB5 LINE L1 5494 6209 -797 4 840 25 31 0 0 chr1 33532525 33532557 -163662875 + AT_rich Low_complexity Low_complexity 1 32 0 4 840 230 310 35 0 chr1 33532697 33532810 -163662622 + L1MB5 LINE L1 6890 7006 -28 4 840 24 85 0 0 chr1 33532857 33532916 -163662516 + AT_rich Low_complexity Low_complexity 1 59 0 4 840 474 154 0 0 chr1 33532928 33533006 -163662426 - L1_Rod LINE L1 -896 4951 4874 4 840 941 185 331 14 chr1 33533000 33533362 -163662070 - L1_Rod LINE L1 -4211 1636 1160 4 840 370 155 8 182 chr1 33533584 33533710 -163661722 + MT2B LTR ERVL 16 119 -414 5 840 1234 159 136 38 chr1 33533720 33534182 -163661250 - Lx4A LINE L1 0 7058 6505 5 840 1206 249 14 40 chr1 33534199 33534550 -163660882 + MT2B LTR ERVL 253 594 -7 5 840 4285 141 30 14 chr1 33534884 33535670 -163659762 + RLTR22_Mur LTR ERVK 1 799 -1049 5 840 1165 74 0 0 chr1 33535782 33535930 -163659502 - B1_Mus1 SINE Alu 0 148 1 5 840 1253 154 66 23 chr1 33536068 33536327 -163659105 + RLTR22_Mur LTR ERVK 1579 1848 0 5 840 198 0 0 0 chr1 33536805 33536827 -163658605 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 840 342 240 98 20 chr1 33538242 33538395 -163657037 + Lx8 LINE L1 7309 7473 0 5 840 27 29 0 0 chr1 33538502 33538536 -163656896 + AT_rich Low_complexity Low_complexity 1 34 0 5 840 297 0 0 0 chr1 33538554 33538587 -163656845 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 840 409 286 127 29 chr1 33539702 33539907 -163655525 + L1MCa LINE L1 166 390 -6118 5 840 299 263 184 10 chr1 33540111 33540307 -163655125 + L1MCa LINE L1 829 1058 -5450 5 840 574 295 73 11 chr1 33540430 33540771 -163654661 + L1M2 LINE L1 2334 2740 -3403 5 840 324 0 0 0 chr1 33540814 33540850 -163654582 + (GGGGA)n Simple_repeat Simple_repeat 3 38 0 6 840 306 0 0 0 chr1 33541100 33541134 -163654298 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 840 442 362 86 62 chr1 33541779 33542292 -163653140 + RLTR21 LTR ERVK 9 533 -1039 6 840 277 266 69 46 chr1 33542650 33542780 -163652652 + RLTR21 LTR ERVK 753 885 -687 6 840 700 110 51 0 chr1 33542864 33542982 -163652450 + B1_Mm SINE Alu 24 147 0 6 840 428 109 35 43 chr1 33543004 33543119 -163652313 + GA-rich Low_complexity Low_complexity 5 118 0 6 840 919 118 0 13 chr1 33543120 33543275 -163652157 + (GAA)n Simple_repeat Simple_repeat 1 153 0 6 840 362 200 200 0 chr1 33543311 33543416 -163652016 + RMER12B LTR ERVK 1097 1222 -182 6 840 432 0 0 0 chr1 33543516 33543564 -163651868 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 840 237 33 0 0 chr1 33543564 33543593 -163651839 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 840 360 0 0 0 chr1 33543626 33543666 -163651766 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 840 231 36 0 0 chr1 33543666 33543693 -163651739 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 840 396 0 0 0 chr1 33543724 33543768 -163651664 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 840 309 26 0 0 chr1 33543768 33543805 -163651627 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 840 468 0 0 0 chr1 33543836 33543888 -163651544 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 840 303 28 0 0 chr1 33543888 33543923 -163651509 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 840 478 292 42 50 chr1 33544031 33544269 -163651163 - MER2 DNA MER2_type -1 344 109 7 840 1669 97 4 0 chr1 33544822 33545060 -163650372 + ORR1A2 LTR MaLR 1 239 -88 7 840 296 254 0 0 chr1 33547897 33547968 -163647464 - ID4 SINE ID -70 82 12 7 840 409 188 0 0 chr1 33548032 33548096 -163647336 + ID4 SINE ID 4 67 -16 7 840 468 0 0 0 chr1 33548175 33548227 -163647205 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 8 840 306 247 55 0 chr1 33548838 33548911 -163646521 + Lx8 LINE L1 6340 6416 -1057 8 840 6722 143 162 18 chr1 33548955 33550194 -163645238 + Lx5 LINE L1 5631 7046 -4 8 840 261 83 0 0 chr1 33550200 33550236 -163645196 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 8 840 947 304 76 51 chr1 33550271 33551159 -163644273 + Lx7 LINE L1 6432 7442 -31 8 840 544 233 73 0 chr1 33554005 33554155 -163641277 - RSINE1 SINE B4 -4 161 1 8 841 1134 44 0 7 chr1 33555412 33555548 -163639884 + B1_Mus1 SINE Alu 2 136 -12 8 841 210 37 0 0 chr1 33555549 33555576 -163639856 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 841 383 328 0 21 chr1 33557637 33557777 -163637655 - MIR SINE MIR -74 188 52 8 841 587 321 71 18 chr1 33558602 33558932 -163636500 + MLT2B1 LTR ERVL 123 567 0 8 841 308 318 56 9 chr1 33559440 33559548 -163635884 + ID_B1 SINE B4 110 222 -2 9 841 448 318 73 12 chr1 33560502 33560747 -163634685 + Tigger14a DNA MER2_type 6 265 -59 9 841 254 356 63 11 chr1 33561600 33561790 -163633642 - L2 LINE L2 -1007 2412 2213 9 841 182 131 65 16 chr1 33562926 33562988 -163632444 + CT-rich Low_complexity Low_complexity 3 67 0 9 841 960 41 0 202 chr1 33563083 33563266 -163632166 + B1_Mm SINE Alu 2 147 0 9 841 189 0 0 0 chr1 33563267 33563288 -163632144 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 841 289 236 56 11 chr1 33563588 33563678 -163631754 - MTE2a LTR MaLR 0 379 286 9 841 293 308 90 34 chr1 33563739 33563917 -163631515 - MTE2a LTR MaLR -189 190 3 9 841 1028 266 98 80 chr1 33564705 33565154 -163630278 + MT2A LTR ERVL 70 526 -7 9 841 2653 131 33 2 chr1 33566260 33566681 -163628751 + Lx4A LINE L1 6624 7057 -1 9 841 519 17 0 0 chr1 33567449 33567509 -163627923 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 841 494 279 52 6 chr1 33567731 33567904 -163627528 + MLT1B LTR MaLR 208 388 -2 1 841 681 168 24 77 chr1 33568320 33568488 -163626944 + Lx3A LINE L1 6818 6976 -5 1 841 1324 109 10 15 chr1 33568605 33568801 -163626631 + B2_Mm2 SINE B2 1 195 0 1 841 241 210 88 115 chr1 33569276 33569389 -163626043 - L1MD1 LINE L1 -10 6349 6240 1 841 287 330 0 30 chr1 33569443 33569543 -163625889 - L1MD1 LINE L1 -218 6141 6045 1 841 610 295 24 29 chr1 33569620 33569826 -163625606 - B4A SINE B4 -86 206 2 1 841 498 316 122 33 chr1 33569876 33570236 -163625196 - L1MD1 LINE L1 -224 6018 5627 1 841 1237 102 39 11 chr1 33570390 33570569 -163624863 + B2_Mm2 SINE B2 5 188 -7 1 841 216 314 14 0 chr1 33571419 33571489 -163623943 + MIRc SINE MIR 93 163 -105 1 841 363 275 19 56 chr1 33572533 33572641 -163622791 - B4A SINE B4 -187 105 2 1 841 227 319 104 21 chr1 33572732 33572876 -163622556 + MIRm SINE MIR 1 156 -120 1 841 345 234 13 6 chr1 33573489 33573648 -163621784 + (TA)n Simple_repeat Simple_repeat 2 161 0 1 841 3518 18 5 0 chr1 33573857 33574251 -163621181 - MTA_Mm LTR MaLR 0 396 1 1 841 1234 54 0 0 chr1 33574737 33574885 -163620547 - B1_Mus1 SINE Alu 0 148 1 1 841 341 270 0 0 chr1 33574965 33575039 -163620393 + RSINE1 SINE B4 4 77 -88 1 841 330 118 212 97 chr1 33575805 33575890 -163619542 - Lx9 LINE L1 0 7644 7536 1 841 180 0 0 0 chr1 33575890 33575910 -163619522 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 841 330 118 212 97 chr1 33575910 33575937 -163619495 - Lx9 LINE L1 -109 7535 7519 1 841 319 179 218 0 chr1 33576785 33576863 -163618569 - MTE2a LTR MaLR -282 97 3 1 841 314 214 15 15 chr1 33577767 33577873 -163617559 - B1_Mur1 SINE Alu -2 148 42 1 841 365 301 58 15 chr1 33578232 33578438 -163616994 + MER33 DNA MER1_type 20 234 -90 1 841 186 360 45 0 chr1 33582061 33582150 -163613282 - L2a LINE L2 -31 3395 3303 1 841 818 249 151 52 chr1 33582201 33582545 -163612887 - ORR1C2 LTR MaLR 0 384 7 1 841 272 139 0 0 chr1 33582688 33582731 -163612701 + URR1B DNA MER1_type 46 88 -137 1 841 226 299 91 11 chr1 33582843 33582931 -163612501 - ORR1E LTR MaLR 0 359 265 1 841 207 0 0 0 chr1 33583851 33583874 -163611558 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 841 23 68 0 0 chr1 33584193 33584237 -163611195 + AT_rich Low_complexity Low_complexity 1 44 0 1 841 1566 40 25 0 chr1 33584993 33585194 -163610238 + L1Md_F2 LINE L1 6377 6582 0 1 841 422 246 55 0 chr1 33585446 33585556 -163609876 + RSINE1 SINE B4 2 117 -48 1 841 260 278 50 30 chr1 33585997 33586097 -163609335 - PB1 SINE Alu -2 125 24 1 841 731 239 98 20 chr1 33586378 33586569 -163608863 + Lx5 LINE L1 6826 7008 -42 1 841 260 0 57 0 chr1 33588039 33588074 -163607358 + (TCTCCC)n Simple_repeat Simple_repeat 5 41 0 1 841 552 312 73 16 chr1 33588076 33588268 -163607164 - ID_B1 SINE B4 -20 204 2 1 841 419 226 202 0 chr1 33589539 33589707 -163605725 + B3 SINE B2 9 210 -6 1 841 201 74 0 0 chr1 33589898 33589925 -163605507 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 841 428 244 399 17 chr1 33592234 33592459 -163602973 + MTD LTR MaLR 18 331 -88 1 841 471 293 0 79 chr1 33593326 33593478 -163601954 - B1F2 SINE Alu -6 143 4 1 841 705 236 5 151 chr1 33593521 33593740 -163601692 + B3A SINE B2 1 187 -8 1 841 716 304 6 111 chr1 33593805 33594130 -163601302 + B4 SINE B4 2 292 0 1 841 281 245 84 9 chr1 33594544 33594651 -163600781 + PB1D10 SINE Alu 1 115 -2 1 841 806 216 88 10 chr1 33594705 33594897 -163600535 + B3 SINE B2 4 210 -6 1 841 2496 18 0 0 chr1 33595306 33595589 -163599843 - L1_Mm LINE L1 -1569 4314 4032 1 841 3757 12 0 0 chr1 33595587 33596006 -163599426 + L1Md_T LINE L1 5168 5586 -297 1 841 8758 24 1 0 chr1 33596006 33597001 -163598431 + L1Md_T LINE L1 5587 6582 0 1 841 675 261 0 24 chr1 33597049 33597218 -163598214 + B3 SINE B2 33 197 -19 1 841 348 229 0 0 chr1 33597221 33597330 -163598102 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 841 286 307 0 29 chr1 33601046 33601150 -163594282 + B4A SINE B4 161 261 -31 1 841 338 0 24 0 chr1 33601156 33601198 -163594234 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 841 495 48 0 0 chr1 33601461 33601523 -163593909 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1 841 201 94 0 0 chr1 33601946 33601978 -163593454 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 1 841 185 65 0 31 chr1 33602162 33602194 -163593238 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 1 841 762 281 184 9 chr1 33602721 33603048 -163592384 - MTD LTR MaLR -31 388 5 1 841 466 241 98 0 chr1 33603266 33603399 -163592033 + B1_Mur3 SINE Alu 2 147 -2 1 841 273 109 0 0 chr1 33603410 33603456 -163591976 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 1 841 242 56 28 0 chr1 33603489 33603525 -163591907 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 1 841 413 252 24 24 chr1 33605439 33605565 -163589867 - Tigger7 DNA MER2_type 0 2491 2366 1 841 1913 156 44 75 chr1 33606202 33606591 -163588841 - ORR1C1 LTR MaLR 0 378 2 1 841 232 280 80 0 chr1 33606752 33606827 -163588605 + MIRb SINE MIR 60 140 -128 1 841 246 314 14 0 chr1 33607106 33607176 -163588256 + ID4 SINE ID 3 73 -10 1 841 689 274 102 88 chr1 33607306 33607679 -163587753 - MTE2a LTR MaLR 0 379 2 1 841 375 269 136 10 chr1 33608070 33608269 -163587163 + L1MD2 LINE L1 5385 5608 -634 1 841 2671 167 26 98 chr1 33608270 33608853 -163586579 + L1VL1 LINE L1 24 564 -5858 1 841 2752 93 11 0 chr1 33608853 33609231 -163586201 + L1_Mus3 LINE L1 6245 6626 -12 1 841 266 283 87 55 chr1 33609233 33609416 -163586016 + L1MD2 LINE L1 5587 5775 -467 1 841 23 0 0 0 chr1 33609789 33609812 -163585620 + AT_rich Low_complexity Low_complexity 1 23 0 1 841 480 291 95 39 chr1 33609812 33610171 -163585261 + L1MD2 LINE L1 5896 6326 -33 1 841 216 318 73 91 chr1 33611253 33611485 -163583947 - B4 SINE B4 -48 244 17 1 841 225 286 102 0 chr1 33611625 33611723 -163583709 - MIRc SINE MIR -125 143 36 1 841 1198 48 0 0 chr1 33612275 33612421 -163583011 + B1_Mus2 SINE Alu 2 147 0 1 841 29152 122 14 11 chr1 33613147 33619406 -163576026 + L1_Mus3 LINE L1 359 6638 0 1 841 579 151 6 115 chr1 33619795 33619811 -163575621 + ID_B1 SINE B4 78 222 0 1 841 992 84 0 27 chr1 33619811 33619958 -163575474 + B1_Mus1 SINE Alu 6 148 0 1 841 180 0 0 0 chr1 33619960 33619980 -163575452 + (A)n Simple_repeat Simple_repeat 1 20 0 1 841 333 260 109 77 chr1 33620176 33620397 -163575035 + L1MB8 LINE L1 5781 6008 -166 1 841 333 221 135 0 chr1 33620771 33620875 -163574557 + L1MB8 LINE L1 6047 6164 -20 1 841 1667 256 99 14 chr1 33621318 33621822 -163573610 + RMER15 LTR ERVL 29 575 0 1 841 318 233 6 0 chr1 33622128 33622210 -163573222 + PB1D10 SINE Alu 36 120 0 1 841 2763 3 0 0 chr1 33623366 33623668 -163571764 - L1Md_T LINE L1 0 6582 6281 1 841 995 210 20 0 chr1 33629352 33629552 -163565880 - B3 SINE B2 -8 208 5 1 841 945 71 0 0 chr1 33629916 33630043 -163565389 - B1_Mus1 SINE Alu -9 139 13 1 841 2630 236 63 6 chr1 33630139 33630778 -163564654 - Lx7 LINE L1 -600 7096 6422 1 841 722 187 73 83 chr1 33630776 33630945 -163564487 - L1_Mur3 LINE L1 -175 5705 5548 1 841 364 19 38 0 chr1 33630945 33630998 -163564434 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 841 722 187 73 83 chr1 33630998 33631032 -163564400 - L1_Mur3 LINE L1 -333 5547 5505 1 841 2129 196 43 12 chr1 33631077 33631562 -163563870 - L1_Mur3 LINE L1 -1627 4253 3754 1 841 1182 246 47 23 chr1 33631613 33632157 -163563275 - L1_Mur3 LINE L1 -4383 1497 931 1 841 207 0 0 0 chr1 33632157 33632180 -163563252 + (ATCTG)n Simple_repeat Simple_repeat 1 23 0 1 841 1182 259 86 39 chr1 33632180 33632254 -163563178 - L1_Mur3 LINE L1 -6798 930 855 1 841 8900 16 0 1 chr1 33632529 33633526 -163561906 + L1Md_A LINE L1 5587 6582 0 1 841 291 56 56 0 chr1 33633607 33633661 -163561771 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 841 3173 22 6 0 chr1 33633663 33634027 -163561405 - L1Md_F2 LINE L1 -17 6565 6200 1 841 298 291 13 0 chr1 33634986 33635065 -163560367 - ID2 SINE ID 0 83 4 1 841 300 271 10 20 chr1 33638288 33638386 -163557046 - MTEb LTR MaLR -23 356 260 1 841 2264 236 154 22 chr1 33638612 33639152 -163556280 + L1_Mur3 LINE L1 3731 4364 -1516 1 841 306 0 0 0 chr1 33639152 33639186 -163556246 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 1 841 2264 236 154 22 chr1 33639186 33639506 -163555926 + L1_Mur3 LINE L1 4365 4704 -1176 1 841 231 238 82 12 chr1 33639534 33639619 -163555813 + L1M2 LINE L1 4898 4988 -1155 1 841 863 268 217 16 chr1 33639700 33639971 -163555461 + Lx8 LINE L1 6813 7152 -321 1 841 5838 72 13 65 chr1 33639971 33640818 -163554614 - RLTR13B4 LTR ERVK 0 803 1 1 841 863 268 217 16 chr1 33640818 33640979 -163554453 + Lx8 LINE L1 7153 7332 -141 1 841 249 366 93 16 chr1 33641912 33642106 -163553326 - MIRb SINE MIR -21 247 39 1 841 343 319 51 34 chr1 33642698 33642815 -163552617 + MLT1I LTR MaLR 227 345 -66 1 841 216 67 0 0 chr1 33643082 33643112 -163552320 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 841 21 36 0 0 chr1 33644327 33644355 -163551077 + AT_rich Low_complexity Low_complexity 1 28 0 1 841 259 237 185 0 chr1 33644355 33644490 -163550942 - Lx8 LINE L1 -2 7471 7312 1 841 1054 260 188 11 chr1 33644534 33644556 -163550876 - Lx8 LINE L1 -235 7238 7217 1 841 324 0 0 0 chr1 33644556 33644592 -163550840 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 841 1054 260 188 11 chr1 33644592 33644931 -163550501 - Lx8 LINE L1 -257 7216 6813 1 841 201 163 0 0 chr1 33645225 33645274 -163550158 + C-rich Low_complexity Low_complexity 1 49 0 1 841 1079 61 0 0 chr1 33645280 33645412 -163550020 - B1_Mus1 SINE Alu -12 136 5 1 841 229 333 10 20 chr1 33646546 33646647 -163548785 + MT2B2 LTR ERVL 154 253 -331 1 841 186 43 0 0 chr1 33646693 33646716 -163548716 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1 841 842 168 0 0 chr1 33646720 33646857 -163548575 - B1_Mus1 SINE Alu -6 142 6 1 841 474 209 303 5 chr1 33646857 33647045 -163548387 + Lx6 LINE L1 7038 7281 -179 1 841 223 318 0 43 chr1 33647594 33647663 -163547769 + B4A SINE B4 81 146 -146 1 841 410 233 0 0 chr1 33647614 33647700 -163547732 + PB1D10 SINE Alu 13 98 -19 2 841 485 225 24 48 chr1 33647769 33647895 -163547537 + ID_B1 SINE B4 94 216 -8 2 841 315 0 0 0 chr1 33648322 33648357 -163547075 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 841 1404 195 32 84 chr1 33648415 33648784 -163546648 - ORR1D1 LTR MaLR -24 350 1 2 841 642 104 0 0 chr1 33649406 33649502 -163545930 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 2 841 272 256 54 22 chr1 33650818 33650910 -163544522 + MER67B LTR ERV1 567 661 0 2 841 291 217 48 0 chr1 33652742 33652825 -163542607 + (CAGAGA)n Simple_repeat Simple_repeat 3 89 0 2 841 1397 230 55 65 chr1 33653174 33653950 -163541482 + L1_Mur3 LINE L1 759 1539 -4341 2 841 183 156 0 0 chr1 33653967 33653999 -163541433 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 841 813 143 51 13 chr1 33654015 33654171 -163541261 - B2_Mm2 SINE B2 -26 169 8 2 841 3849 212 60 33 chr1 33654178 33655239 -163540193 + L1_Mur3 LINE L1 1533 2622 -3258 2 841 568 195 127 21 chr1 33655239 33655428 -163540004 - MTC-int LTR MaLR -1328 252 1 2 841 1650 214 68 30 chr1 33655433 33655832 -163539600 - MTD LTR MaLR -5 414 1 2 841 433 299 81 25 chr1 33656765 33656946 -163538486 + B3A SINE B2 1 183 -33 2 841 210 71 0 230 chr1 33656971 33657136 -163538296 + CT-rich Low_complexity Low_complexity 2 128 0 2 841 237 58 0 263 chr1 33657382 33657614 -163537818 + CT-rich Low_complexity Low_complexity 2 172 0 2 841 209 0 0 241 chr1 33657801 33657813 -163537619 + polypyrimidine Low_complexity Low_complexity 56 67 0 2 841 3739 35 5 2 chr1 33657813 33658248 -163537184 + RLTR10C LTR ERVK 1 436 0 2 841 209 0 0 241 chr1 33658248 33658322 -163537110 + polypyrimidine Low_complexity Low_complexity 2 55 0 2 841 253 339 26 46 chr1 33658693 33658888 -163536544 - MLT1B LTR MaLR -158 232 42 2 841 387 89 0 0 chr1 33659006 33659062 -163536370 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 2 841 780 282 155 3 chr1 33659136 33659445 -163535987 + MER31B LTR ERV1 3 358 -108 2 841 1565 26 5 0 chr1 33660838 33661027 -163534405 + L1Md_F2 LINE L1 6380 6569 -13 2 841 248 236 200 23 chr1 33661082 33661212 -163534220 + RSINE1 SINE B4 3 155 -10 2 841 280 253 11 22 chr1 33661796 33661885 -163533547 + RSINE1 SINE B4 78 165 0 2 841 544 221 178 26 chr1 33661970 33662153 -163533279 - L1M5 LINE L1 -385 5777 5569 2 841 216 0 0 0 chr1 33662677 33662701 -163532731 + (A)n Simple_repeat Simple_repeat 1 24 0 2 841 315 342 140 5 chr1 33662701 33662901 -163532531 + L1ME2 LINE L1 5935 6161 -3 2 841 379 238 54 62 chr1 33663467 33663597 -163531835 + ID_B1 SINE B4 95 223 -1 2 841 436 271 136 20 chr1 33663634 33663781 -163531651 + RSINE1 SINE B4 2 165 0 2 841 1822 142 7 84 chr1 33663881 33664267 -163531165 - ORR1C2 LTR MaLR -8 413 25 2 841 21 0 0 0 chr1 33664656 33664677 -163530755 + AT_rich Low_complexity Low_complexity 1 21 0 2 841 628 223 179 72 chr1 33665611 33665930 -163529502 + ORR1E LTR MaLR 3 355 -4 2 841 454 278 300 18 chr1 33666218 33666445 -163528987 - B4A SINE B4 0 292 2 2 841 1081 90 0 6 chr1 33667786 33667942 -163527490 + B2_Mm2 SINE B2 27 181 -14 2 841 272 244 70 0 chr1 33668363 33668449 -163526983 + MTEa LTR MaLR 288 379 0 2 841 1866 155 89 18 chr1 33668457 33668839 -163526593 + MTC LTR MaLR 5 413 -8 2 841 509 216 208 7 chr1 33669733 33669882 -163525550 + B4A SINE B4 105 283 -9 2 841 528 196 169 34 chr1 33670120 33670268 -163525164 + B3 SINE B2 48 215 -1 2 841 470 71 29 0 chr1 33670396 33670466 -163524966 + (GGGA)n Simple_repeat Simple_repeat 2 73 0 2 841 28 0 0 0 chr1 33670668 33670696 -163524736 + AT_rich Low_complexity Low_complexity 1 28 0 2 841 405 298 147 39 chr1 33670828 33671264 -163524168 + L1M4 LINE L1 3601 4083 -2063 2 841 942 278 159 7 chr1 33671333 33671760 -163523672 + Lx9 LINE L1 6957 7448 -196 2 841 525 244 172 6 chr1 33671924 33672093 -163523339 + B3 SINE B2 9 205 -11 2 841 22 0 0 0 chr1 33672107 33672129 -163523303 + AT_rich Low_complexity Low_complexity 1 22 0 2 841 2885 47 18 3 chr1 33673738 33674126 -163521306 - RLTR10C LTR ERVK -42 394 1 2 841 201 39 0 0 chr1 33674800 33674826 -163520606 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 841 1516 177 58 67 chr1 33675148 33675493 -163519939 - ORR1B2 LTR MaLR -8 359 18 2 841 227 227 73 29 chr1 33675552 33675620 -163519812 + Lx8 LINE L1 7402 7472 -1 2 841 1348 317 75 35 chr1 33676498 33676910 -163518522 - L1M4c LINE L1 -2577 3802 3373 2 841 1412 75 11 11 chr1 33676910 33677100 -163518332 - B2_Mm1t SINE B2 -2 191 2 2 841 1348 306 109 40 chr1 33677100 33678049 -163517383 - L1M4c LINE L1 -2994 3382 2311 2 841 954 238 5 0 chr1 33678051 33678253 -163517179 + MTD LTR MaLR 1 203 -216 2 841 235 302 11 11 chr1 33678278 33678365 -163517067 - RMER3D4 LTR ERVK -9 574 488 2 841 355 224 30 20 chr1 33678350 33678450 -163516982 - RLTR17 LTR ERVK -105 587 487 2 841 2281 118 30 2 chr1 33678459 33678857 -163516575 - RLTR31_Mm LTR ERVK -152 409 1 2 841 770 199 20 115 chr1 33678857 33679101 -163516331 + MTD LTR MaLR 199 419 0 2 841 279 224 50 25 chr1 33679101 33679220 -163516212 + MTD-int LTR MaLR 7 128 -1130 2 841 521 259 75 133 chr1 33679206 33679500 -163515932 + MTD-int LTR MaLR 736 1135 -123 2 841 1148 62 7 0 chr1 33679552 33679696 -163515736 + B1_Mm SINE Alu 3 147 0 2 841 1980 201 27 10 chr1 33679731 33680143 -163515289 + MTD LTR MaLR 1 419 0 2 841 275 327 126 25 chr1 33680272 33680662 -163514770 - L1M4c LINE L1 -2119 2031 1463 2 841 529 274 38 19 chr1 33681184 33681344 -163514088 + L1M2 LINE L1 3562 3724 -2419 2 841 1795 164 72 3 chr1 33681345 33681693 -163513739 + ORR1C2 LTR MaLR 1 372 -12 2 841 480 185 46 9 chr1 33681693 33681802 -163513630 + L1M2 LINE L1 3737 3849 -2294 2 841 351 113 0 0 chr1 33682130 33682192 -163513240 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 841 256 283 53 32 chr1 33683043 33683138 -163512294 + MLT1C LTR MaLR 4 100 -367 2 841 328 331 65 12 chr1 33683222 33683390 -163512042 + MLT1C LTR MaLR 274 450 -17 2 841 255 333 13 26 chr1 33684193 33684270 -163511162 + ID4 SINE ID 2 77 -6 2 841 326 241 12 12 chr1 33684745 33684825 -163510607 + ID2 SINE ID 1 80 -3 2 842 334 251 140 39 chr1 33686161 33686339 -163509093 - B3A SINE B2 0 198 3 2 842 690 242 72 53 chr1 33687544 33687753 -163507679 + ID_B1 SINE B4 10 222 -2 2 842 318 271 84 27 chr1 33688271 33688415 -163507017 + PB1D10 SINE Alu 1 149 0 2 842 1094 223 10 0 chr1 33688670 33688876 -163506556 + B3 SINE B2 1 208 -8 2 842 546 245 184 17 chr1 33689082 33689333 -163506099 + Lx8 LINE L1 5486 5786 -94 2 842 350 197 169 4 chr1 33689468 33689603 -163505829 - Lx9 LINE L1 -1667 5977 5768 2 842 602 275 7 13 chr1 33689609 33689760 -163505672 + Lx8 LINE L1 6559 6708 -765 2 842 366 23 0 0 chr1 33689968 33690011 -163505421 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 842 237 329 100 27 chr1 33690400 33690550 -163504882 + RMER20B LTR ERVK 428 588 -39 2 842 425 271 47 0 chr1 33690575 33690704 -163504728 - Lx8 LINE L1 -533 6940 6806 2 842 3110 103 32 12 chr1 33691342 33691835 -163503597 + Lx4A LINE L1 5544 6050 -1008 2 842 189 0 0 0 chr1 33691845 33691866 -163503566 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 842 200 128 0 25 chr1 33691986 33692026 -163503406 + T-rich Low_complexity Low_complexity 2 40 0 2 842 22 35 0 0 chr1 33692269 33692298 -163503134 + AT_rich Low_complexity Low_complexity 1 29 0 2 842 29 28 0 0 chr1 33692455 33692491 -163502941 + AT_rich Low_complexity Low_complexity 1 36 0 2 842 288 197 91 13 chr1 33692673 33692750 -163502682 + B1F1 SINE Alu 45 127 -22 2 842 446 230 161 6 chr1 33693295 33693457 -163501975 + B3 SINE B2 6 192 -24 2 842 700 197 8 0 chr1 33693834 33693961 -163501471 + RSINE1 SINE B4 3 130 -35 2 842 291 54 0 0 chr1 33693970 33694007 -163501425 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 842 288 0 0 0 chr1 33694009 33694041 -163501391 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 842 1241 21 7 0 chr1 33694089 33694232 -163501200 + B1_Mm SINE Alu 3 146 -1 2 842 39 22 0 0 chr1 33694237 33694283 -163501149 + AT_rich Low_complexity Low_complexity 1 46 0 2 842 823 251 97 5 chr1 33696097 33696443 -163498989 - MTD LTR MaLR -17 402 3 2 842 25 0 0 0 chr1 33696502 33696527 -163498905 + AT_rich Low_complexity Low_complexity 1 25 0 2 842 244 246 28 97 chr1 33696549 33696621 -163498811 + ID4_ SINE ID 11 77 -6 2 842 941 195 60 0 chr1 33697054 33697254 -163498178 + B3 SINE B2 1 212 -4 2 842 681 213 12 42 chr1 33697607 33697798 -163497634 - B3 SINE B2 -13 182 8 2 842 334 317 19 82 chr1 33699741 33699899 -163495533 - B3A SINE B2 0 198 51 2 842 468 230 56 1 chr1 33700587 33700708 -163494724 - B1F SINE Alu 0 149 24 2 842 252 250 0 45 chr1 33701167 33701234 -163494198 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 842 198 71 0 0 chr1 33701632 33701660 -163493772 + (GGGGA)n Simple_repeat Simple_repeat 4 31 0 2 842 469 262 39 39 chr1 33701707 33701886 -163493546 - ID_B1 SINE B4 -14 210 32 2 842 255 217 0 0 chr1 33702514 33702574 -163492858 + GA-rich Low_complexity Low_complexity 2 61 0 2 842 1096 78 7 0 chr1 33703126 33703280 -163492152 + B2_Mm2 SINE B2 2 156 -39 2 842 672 45 0 0 chr1 33703281 33703369 -163492063 + (GAAA)n Simple_repeat Simple_repeat 4 91 0 2 842 1196 62 7 0 chr1 33703373 33703519 -163491913 + B1_Mus1 SINE Alu 1 147 -1 2 842 243 88 0 0 chr1 33703534 33703568 -163491864 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2 842 33 25 0 0 chr1 33703568 33703608 -163491824 + AT_rich Low_complexity Low_complexity 1 40 0 2 842 208 255 0 0 chr1 33703696 33703743 -163491689 + A-rich Low_complexity Low_complexity 5 51 0 2 842 249 57 0 0 chr1 33704119 33704154 -163491278 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 842 360 77 0 0 chr1 33704603 33704655 -163490777 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 842 565 246 35 7 chr1 33704992 33705135 -163490297 - B1_Mur1 SINE Alu -1 148 2 3 842 251 161 18 0 chr1 33705315 33705371 -163490061 + CT-rich Low_complexity Low_complexity 1 57 0 3 842 1561 164 174 15 chr1 33705553 33705893 -163489539 + ORR1B1 LTR MaLR 1 394 0 3 842 420 71 0 0 chr1 33706617 33706673 -163488759 + (CCA)n Simple_repeat Simple_repeat 1 56 0 3 842 493 279 70 0 chr1 33706759 33706888 -163488544 - RSINE1 SINE B4 -24 141 4 3 842 532 298 109 15 chr1 33706983 33707143 -163488289 + ID_B1 SINE B4 5 176 -48 3 842 3074 26 0 0 chr1 33707143 33707489 -163487943 - ORR1A1 LTR MaLR 0 346 1 3 842 532 298 109 15 chr1 33707489 33707529 -163487903 + ID_B1 SINE B4 177 223 -1 3 842 222 355 21 0 chr1 33708730 33708823 -163486609 + MIRb SINE MIR 166 260 -8 3 842 7843 64 1 4 chr1 33709157 33710890 -163484542 + L1_Mus1 LINE L1 403 2128 -3755 3 842 7443 84 5 12 chr1 33710884 33712544 -163482888 + L1_Mus1 LINE L1 4929 6567 0 3 842 264 277 24 12 chr1 33712757 33712841 -163482591 - B1F1 SINE Alu -17 132 48 3 842 430 297 39 33 chr1 33713692 33713845 -163481587 + B3A SINE B2 45 198 0 3 842 481 297 13 6 chr1 33713846 33714002 -163481430 + Lx7 LINE L1 7144 7300 -396 3 842 33 43 0 0 chr1 33714175 33714222 -163481210 + AT_rich Low_complexity Low_complexity 1 47 0 3 842 682 272 34 5 chr1 33714222 33714429 -163481003 + B3 SINE B2 2 214 -2 3 842 186 43 0 0 chr1 33715524 33715547 -163479885 + (A)n Simple_repeat Simple_repeat 1 23 0 3 842 22 35 0 0 chr1 33715623 33715652 -163479780 + AT_rich Low_complexity Low_complexity 1 29 0 3 842 611 109 0 32 chr1 33715853 33715948 -163479484 + B1_Mm SINE Alu 56 147 0 3 842 1477 74 5 0 chr1 33716011 33716200 -163479232 + B2_Mm1t SINE B2 2 191 -2 3 842 570 200 0 84 chr1 33716265 33716407 -163479025 + RSINE1 SINE B4 36 165 0 3 842 256 183 0 48 chr1 33716449 33716512 -163478920 + Lx9 LINE L1 7585 7644 0 3 842 1216 89 60 16 chr1 33717402 33717585 -163477847 + B2_Mm1a SINE B2 3 193 0 3 842 1133 89 0 0 chr1 33717680 33717826 -163477606 + B1_Mus2 SINE Alu 2 147 0 3 842 554 221 51 14 chr1 33717944 33718082 -163477350 + B3 SINE B2 9 151 -65 3 842 1605 47 0 0 chr1 33718243 33718434 -163476998 + B2_Mm1a SINE B2 1 191 -2 3 842 293 295 62 0 chr1 33718908 33719020 -163476412 + PB1D7 SINE Alu 1 119 -1 3 842 195 129 0 0 chr1 33719044 33719075 -163476357 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 842 1047 85 152 0 chr1 33719255 33719420 -163476012 - B2_Mm2 SINE B2 -4 191 2 3 842 284 216 10 0 chr1 33720989 33721091 -163474341 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 842 225 248 26 0 chr1 33721169 33721282 -163474150 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 842 303 268 47 53 chr1 33721484 33721634 -163473798 - ORR1E LTR MaLR -210 149 1 3 842 210 150 0 0 chr1 33723407 33723447 -163471985 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 3 842 495 33 0 0 chr1 33724222 33724283 -163471149 + (GGGAA)n Simple_repeat Simple_repeat 4 64 0 3 842 249 33 0 0 chr1 33724412 33724442 -163470990 + (GGA)n Simple_repeat Simple_repeat 3 32 0 3 842 252 0 0 0 chr1 33724443 33724471 -163470961 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 842 231 350 42 58 chr1 33725170 33725463 -163469969 + L2b LINE L2 2977 3276 -111 3 842 247 63 62 16 chr1 33725888 33725952 -163469480 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 842 467 209 27 18 chr1 33726791 33726903 -163468529 - PB1D7 SINE Alu -4 116 4 3 842 1111 75 0 13 chr1 33727942 33728091 -163467341 + B1_Mus2 SINE Alu 1 147 0 3 842 233 144 11 53 chr1 33728091 33728176 -163467256 + A-rich Low_complexity Low_complexity 11 91 0 3 842 586 223 38 8 chr1 33728452 33728583 -163466849 - B1_Mur1 SINE Alu -11 138 4 3 842 284 221 83 135 chr1 33728802 33728995 -163466437 - RLTR23 LTR ERV1 -4 426 244 3 842 599 209 21 17 chr1 33729481 33729649 -163465783 - B3 SINE B2 -29 166 1 3 842 221 312 162 25 chr1 33730784 33731067 -163464365 - L2a LINE L2 -1 3425 3104 3 842 389 329 83 28 chr1 33731110 33731398 -163464034 + L1M5 LINE L1 4750 5053 -1093 3 842 230 356 17 17 chr1 33731455 33731572 -163463860 + PB1 SINE Alu 4 120 -7 3 842 2313 72 8 88 chr1 33731578 33731931 -163463501 + ORR1A2 LTR MaLR 1 325 -2 3 842 715 260 5 27 chr1 33731968 33732154 -163463278 + B3A SINE B2 1 182 -16 3 842 213 197 0 0 chr1 33732163 33732224 -163463208 + GA-rich Low_complexity Low_complexity 2 62 0 3 842 351 256 95 8 chr1 33732257 33732383 -163463049 + L1MB3 LINE L1 6044 6180 -3 3 842 515 279 21 0 chr1 33732588 33732728 -163462704 + ID_B1 SINE B4 1 143 -81 3 842 1083 66 0 0 chr1 33733103 33733240 -163462192 + B1_Mus2 SINE Alu 2 138 -9 3 842 194 0 39 0 chr1 33733240 33733266 -163462166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 842 354 23 0 0 chr1 33734252 33734295 -163461137 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 842 1441 199 145 15 chr1 33735613 33735950 -163459482 + Lx5 LINE L1 6670 7050 0 3 842 484 197 104 14 chr1 33735984 33736128 -163459304 - MLT1B LTR MaLR -223 167 11 3 842 3559 95 17 4 chr1 33736746 33737277 -163458155 - LTRIS2 LTR ERV1 0 564 27 3 842 22 0 0 0 chr1 33737303 33737325 -163458107 + GC_rich Low_complexity Low_complexity 1 22 0 3 842 1779 211 164 85 chr1 33737347 33738114 -163457318 + RMER17B LTR ERVK 1 784 -174 3 842 303 231 210 89 chr1 33738108 33738322 -163457110 + RMER13B LTR ERVK 630 869 -39 3 842 253 248 9 82 chr1 33738765 33738875 -163456557 + L1MD3 LINE L1 7882 7983 -12 3 842 363 322 16 47 chr1 33738889 33739016 -163456416 + B1F SINE Alu 1 123 -26 3 842 285 214 71 0 chr1 33738990 33739046 -163456386 + ID SINE ID 12 71 -153 3 842 238 344 57 16 chr1 33739319 33739443 -163455989 + B4 SINE B4 70 198 -94 3 842 611 199 22 22 chr1 33739343 33739458 -163455974 + B1_Mus1 SINE Alu 9 123 -25 3 842 180 0 0 0 chr1 33739458 33739478 -163455954 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 3 842 611 199 22 22 chr1 33739478 33739501 -163455931 + B1_Mus1 SINE Alu 124 147 -1 3 842 1205 42 7 0 chr1 33739548 33739691 -163455741 - B1_Mus1 SINE Alu -1 147 4 3 842 1615 157 77 56 chr1 33739967 33740345 -163455087 - ORR1B1 LTR MaLR -8 386 1 3 842 226 295 0 118 chr1 33740898 33740914 -163454518 + MT2B LTR ERVL 154 155 -446 3 842 542 264 0 0 chr1 33740914 33741024 -163454408 + B1F SINE Alu 3 112 -37 3 842 361 307 0 19 chr1 33741186 33741289 -163454143 - PB1D9 SINE Alu -7 113 13 3 842 248 117 33 0 chr1 33741573 33741617 -163453815 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 3 842 1200 41 7 0 chr1 33741617 33741763 -163453669 + B1_Mus2 SINE Alu 1 147 0 3 842 248 117 33 0 chr1 33741763 33741778 -163453654 + (CAAAAA)n Simple_repeat Simple_repeat 1 17 0 3 842 673 71 45 0 chr1 33741938 33742050 -163453382 + RMER6C LTR ERVK 210 326 -364 3 842 274 254 122 88 chr1 33742051 33742232 -163453200 - RLTR23 LTR ERV1 0 430 244 3 842 1102 174 33 48 chr1 33742598 33742981 -163452451 + RMER6A LTR ERVK 395 716 -4 3 842 464 241 168 6 chr1 33743018 33743185 -163452247 - MTD LTR MaLR 0 419 226 3 842 517 276 74 11 chr1 33743330 33743506 -163451926 + B3 SINE B2 29 215 -1 3 842 801 153 7 0 chr1 33743622 33743759 -163451673 - B1_Mus2 SINE Alu 0 147 10 3 842 249 216 0 119 chr1 33743685 33743769 -163451663 - MT2B2 LTR ERVL -344 240 167 3 842 515 245 79 0 chr1 33745326 33745465 -163449967 + B4A SINE B4 80 229 -63 3 842 622 239 0 28 chr1 33745465 33745607 -163449825 + B1_Mur2 SINE Alu 1 138 -11 3 842 240 111 0 0 chr1 33745607 33745643 -163449789 + (TGG)n Simple_repeat Simple_repeat 3 38 0 3 842 456 265 69 25 chr1 33745643 33745661 -163449771 + B4 SINE B4 229 243 -49 3 842 2121 151 111 2 chr1 33746911 33747309 -163448123 + BGLII_B LTR ERVK 1 441 0 3 842 330 311 19 0 chr1 33747369 33747472 -163447960 + PB1D10 SINE Alu 1 105 -12 3 842 292 270 0 0 chr1 33747476 33747561 -163447871 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 842 396 55 0 0 chr1 33747561 33747616 -163447816 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 842 292 270 0 0 chr1 33747616 33747630 -163447802 + (TA)n Simple_repeat Simple_repeat 1 14 0 3 842 1110 70 7 0 chr1 33748600 33748742 -163446690 + B1_Mus2 SINE Alu 5 147 0 3 842 2597 262 96 57 chr1 33748773 33749470 -163445962 + Lx8 LINE L1 6231 6967 -506 3 842 423 0 0 0 chr1 33749470 33749517 -163445915 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 842 2597 262 96 57 chr1 33749517 33749701 -163445731 + Lx8 LINE L1 6968 7147 -326 3 842 361 292 78 30 chr1 33749698 33749864 -163445568 + Lx8 LINE L1 7300 7473 0 3 842 2922 143 109 7 chr1 33749936 33750474 -163444958 - RLTR17 LTR ERVK 0 692 100 3 842 434 221 29 9 chr1 33750636 33750741 -163444691 + MLT1C LTR MaLR 358 464 -3 3 842 322 224 114 34 chr1 33750845 33750933 -163444499 + PB1 SINE Alu 13 107 -20 3 842 2410 162 31 14 chr1 33750940 33751354 -163444078 + MTC LTR MaLR 1 421 0 3 842 555 16 0 0 chr1 33751362 33751426 -163444006 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 842 432 67 0 0 chr1 33751675 33751735 -163443697 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 842 225 132 0 0 chr1 33751737 33751775 -163443657 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 842 2328 117 0 18 chr1 33754255 33754587 -163440845 + ORR1A3 LTR MaLR 1 326 0 4 842 318 274 0 78 chr1 33754685 33754788 -163440644 - MIR SINE MIR -79 183 89 4 842 434 213 32 0 chr1 33754895 33754987 -163440445 + B4A SINE B4 1 95 -197 4 842 407 221 10 40 chr1 33754987 33755086 -163440346 + B3 SINE B2 1 96 -120 4 842 510 273 88 11 chr1 33755154 33755319 -163440113 + B4A SINE B4 102 273 -19 4 842 395 271 9 9 chr1 33755371 33755479 -163439953 + MTD LTR MaLR 3 110 -309 4 842 419 0 20 0 chr1 33755482 33755533 -163439899 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 4 842 1002 80 72 0 chr1 33755551 33755689 -163439743 - B1_Mus1 SINE Alu 0 148 1 4 842 321 93 0 0 chr1 33755692 33755746 -163439686 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 4 842 364 39 0 0 chr1 33755752 33755803 -163439629 - B1_Mus2 SINE Alu -2 145 95 4 842 1351 200 26 13 chr1 33755807 33756111 -163439321 + MTD LTR MaLR 110 417 -2 4 842 2894 189 33 28 chr1 33756115 33756655 -163438777 + Lx7 LINE L1 6147 6689 -1007 4 842 1601 209 112 0 chr1 33756654 33757037 -163438395 + Lx7 LINE L1 6839 7264 -432 4 842 504 203 107 14 chr1 33757039 33757179 -163438253 + Lx7 LINE L1 7409 7561 -135 4 842 32 0 0 0 chr1 33757232 33757264 -163438168 + AT_rich Low_complexity Low_complexity 1 32 0 4 842 409 165 86 19 chr1 33757470 33757575 -163437857 + PB1D10 SINE Alu 4 115 -2 4 842 516 91 0 0 chr1 33757624 33757701 -163437731 + URR1A DNA MER1_type 65 141 -85 4 842 315 0 0 0 chr1 33758771 33758806 -163436626 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 842 350 263 43 31 chr1 33758806 33758967 -163436465 + L1_Mur3 LINE L1 2200 2362 -3518 4 842 560 264 0 75 chr1 33758980 33759096 -163436336 + B3A SINE B2 2 112 -86 4 842 1329 170 4 22 chr1 33759096 33759324 -163436108 + URR1B DNA MER1_type 1 224 -1 4 842 560 264 0 75 chr1 33759324 33759420 -163436012 + B3A SINE B2 113 198 0 4 842 779 304 133 20 chr1 33759433 33759803 -163435629 + L1_Rod LINE L1 2380 2773 -3074 4 842 306 0 0 0 chr1 33759803 33759837 -163435595 + (CTATT)n Simple_repeat Simple_repeat 1 34 0 4 842 779 304 133 20 chr1 33759837 33760053 -163435379 + L1_Rod LINE L1 2774 3031 -2816 4 842 489 271 71 26 chr1 33760054 33760209 -163435223 + RSINE1 SINE B4 4 165 0 4 842 315 312 0 0 chr1 33760217 33760297 -163435135 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 842 316 239 287 7 chr1 33760393 33760536 -163434896 + Lx8 LINE L1 7082 7264 -209 4 842 292 217 0 0 chr1 33760538 33760598 -163434834 + RMER15 LTR ERVL 403 462 -113 4 842 315 0 0 0 chr1 33760601 33760636 -163434796 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 842 343 327 0 113 chr1 33760638 33760762 -163434670 + RSINE1 SINE B4 56 165 0 4 842 184 157 0 56 chr1 33760802 33760856 -163434576 + GA-rich Low_complexity Low_complexity 3 53 0 4 842 1127 299 59 7 chr1 33761011 33761490 -163433942 + L1MA4A LINE L1 5483 5969 -155 4 842 336 279 54 83 chr1 33761702 33761870 -163433562 - RSINE1 SINE B4 0 165 3 4 842 228 163 0 0 chr1 33762043 33762086 -163433346 + (ATG)n Simple_repeat Simple_repeat 2 44 0 4 842 593 209 147 11 chr1 33762086 33762270 -163433162 - ID_B1 SINE B4 -14 210 2 4 842 1383 87 16 0 chr1 33762529 33762713 -163432719 + B2_Mm2 SINE B2 3 189 -6 4 842 7624 78 30 2 chr1 33762713 33764187 -163431245 + L1_Mus3 LINE L1 5111 6621 -17 4 842 1496 194 122 12 chr1 33764233 33764577 -163430855 + ORR1C2 LTR MaLR 1 382 -2 4 842 1522 203 183 67 chr1 33764704 33765212 -163430220 + RMER2 LTR ERV1 1 567 0 4 842 398 229 243 32 chr1 33765467 33765652 -163429780 + RMER15 LTR ERVL 352 575 0 4 842 313 197 15 0 chr1 33765945 33766011 -163429421 + MT2B LTR ERVL 1 67 -534 4 842 655 82 10 0 chr1 33766012 33766109 -163429323 - ORR1A2 LTR MaLR 0 327 230 4 842 1784 120 66 41 chr1 33766116 33766508 -163428924 - RMER17C LTR ERVK -8 402 1 4 842 1465 137 0 4 chr1 33766508 33766743 -163428689 - ORR1A2 LTR MaLR -93 234 1 4 842 1044 231 85 31 chr1 33766798 33767092 -163428340 + MT2B LTR ERVL 208 542 -59 4 842 455 261 60 34 chr1 33768331 33768494 -163426938 + Lx8 LINE L1 6308 6554 -1090 4 842 299 287 0 54 chr1 33768568 33768697 -163426735 - Lx7 LINE L1 -16 7680 7559 4 842 404 254 203 16 chr1 33768695 33768887 -163426545 - Lx7 LINE L1 -264 7432 7205 4 842 737 234 48 0 chr1 33769063 33769251 -163426181 - ORR1E LTR MaLR -162 197 1 4 842 1160 206 59 28 chr1 33769251 33769605 -163425827 - ORR1E-int LTR MaLR -53 1527 1010 4 842 527 254 0 0 chr1 33769586 33769696 -163425736 - ORR1E LTR MaLR -249 110 1 4 842 513 262 94 0 chr1 33769700 33769891 -163425541 - MLT1D LTR MaLR -292 213 5 4 842 355 299 22 12 chr1 33770263 33770409 -163425023 - MTE2b LTR MaLR -229 150 6 4 842 299 246 0 0 chr1 33770400 33770469 -163424963 - MTEb LTR MaLR -308 71 3 4 842 455 202 286 56 chr1 33771588 33771766 -163423666 - ORR1D1 LTR MaLR -3 371 153 4 842 426 39 0 0 chr1 33772399 33772451 -163422981 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 842 261 0 0 0 chr1 33772451 33772479 -163422953 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 842 341 326 60 15 chr1 33772587 33772615 -163422817 - B4 SINE B4 -63 229 90 4 842 510 245 0 0 chr1 33772615 33772721 -163422711 - B1F2 SINE Alu -39 110 5 4 842 1101 42 42 0 chr1 33772845 33772987 -163422445 - B1_Mus1 SINE Alu 0 148 1 4 842 263 262 16 77 chr1 33772994 33773176 -163422256 - RLTR12B LTR ERVK -117 411 241 4 842 529 228 87 19 chr1 33773171 33773233 -163422199 - RLTR12B LTR ERVK -240 288 217 4 842 360 0 0 0 chr1 33773233 33773273 -163422159 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 4 842 529 228 87 19 chr1 33773273 33773284 -163422148 - RLTR12B LTR ERVK -312 216 205 4 842 603 0 0 0 chr1 33773284 33773351 -163422081 + (TTCTC)n Simple_repeat Simple_repeat 3 69 0 4 842 529 228 87 19 chr1 33773351 33773437 -163421995 - RLTR12B LTR ERVK -324 204 118 4 842 1176 54 0 13 chr1 33773442 33773592 -163421840 + B1_Mus1 SINE Alu 1 148 0 4 842 196 28 54 27 chr1 33773592 33773629 -163421803 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 842 1297 249 46 24 chr1 33773741 33774112 -163421320 - MTE2b LTR MaLR 0 379 1 4 842 219 158 0 0 chr1 33774393 33774431 -163421001 + ID4 SINE ID 23 60 -23 4 842 1644 31 5 0 chr1 33774784 33774975 -163420457 + B2_Mm1a SINE B2 2 193 0 4 842 1219 42 0 0 chr1 33775074 33775216 -163420216 + B1_Mus1 SINE Alu 1 142 -6 4 842 25 0 0 0 chr1 33775225 33775250 -163420182 + AT_rich Low_complexity Low_complexity 1 25 0 4 842 1331 81 40 0 chr1 33775392 33775566 -163419866 - B2_Mm2 SINE B2 -14 181 1 4 842 366 319 96 0 chr1 33775621 33775756 -163419676 + B1F1 SINE Alu 2 149 0 4 842 402 248 29 29 chr1 33776259 33776363 -163419069 - PB1D10 SINE Alu -8 109 6 4 842 326 274 0 31 chr1 33776277 33776375 -163419057 - ID_B1 SINE B4 -55 169 75 4 842 361 184 153 0 chr1 33777514 33777612 -163417820 - B1_Mur1 SINE Alu -9 140 28 4 842 285 281 15 104 chr1 33777963 33778098 -163417334 + YREP_Mm Unknown Unknown 173 295 -1517 4 842 839 256 29 24 chr1 33777981 33778116 -163417316 - ID_B1 SINE B4 -5 219 85 4 842 243 0 0 0 chr1 33778116 33778143 -163417289 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 842 839 256 29 24 chr1 33778143 33778215 -163417217 - ID SINE ID -140 84 11 4 842 239 207 67 22 chr1 33778282 33778371 -163417061 - L1M5 LINE L1 -380 5793 5701 4 842 269 330 16 57 chr1 33778576 33778698 -163416734 - PB1D9 SINE Alu 0 120 4 4 842 215 361 102 0 chr1 33778748 33778856 -163416576 + MER5B DNA MER1_type 59 177 -1 4 842 361 293 180 0 chr1 33778891 33779041 -163416391 - LTR16B1 LTR ERVL -1 479 303 4 842 371 259 34 17 chr1 33779229 33779347 -163416085 - PB1D7 SINE Alu 0 120 1 4 842 1670 31 0 10 chr1 33779618 33779813 -163415619 + B2_Mm1a SINE B2 1 193 0 4 842 1504 48 16 26 chr1 33779973 33780165 -163415267 + B2_Mm2 SINE B2 2 191 -4 4 842 184 299 217 29 chr1 33780377 33780446 -163414986 - MIRb SINE MIR -80 188 107 4 842 261 330 53 0 chr1 33780996 33781090 -163414342 - ID_B1 SINE B4 -8 216 118 4 842 237 308 165 0 chr1 33781136 33781227 -163414205 - PB1D10 SINE Alu -10 107 2 4 842 395 237 0 0 chr1 33781288 33781364 -163414068 + ID4 SINE ID 2 77 -6 4 842 790 206 101 21 chr1 33781910 33782098 -163413334 - MTD LTR MaLR 0 419 217 4 842 244 224 0 0 chr1 33782085 33782134 -163413298 + ID4_ SINE ID 32 80 -3 4 842 593 212 7 52 chr1 33782163 33782317 -163413115 + B1F2 SINE Alu 2 148 -1 4 842 225 65 0 0 chr1 33783026 33783057 -163412375 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 4 842 655 155 56 98 chr1 33783255 33783398 -163412034 + B1_Mur1 SINE Alu 1 137 -12 4 842 21 0 0 0 chr1 33783494 33783515 -163411917 + AT_rich Low_complexity Low_complexity 1 21 0 4 842 825 134 0 23 chr1 33783610 33783740 -163411692 + B1_Mur2 SINE Alu 23 149 0 4 842 225 0 0 0 chr1 33783851 33783876 -163411556 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 842 49 0 0 0 chr1 33784071 33784120 -163411312 + AT_rich Low_complexity Low_complexity 1 49 0 4 842 192 111 0 0 chr1 33784120 33784156 -163411276 + (T)n Simple_repeat Simple_repeat 1 36 0 4 842 1177 62 0 0 chr1 33784156 33784300 -163411132 - B1_Mm SINE Alu 0 147 4 4 842 717 196 88 12 chr1 33785046 33785206 -163410226 - B3 SINE B2 0 216 45 4 842 227 265 107 66 chr1 33787548 33787669 -163407763 + B3 SINE B2 78 203 -13 4 842 376 166 0 85 chr1 33787719 33787884 -163407548 + (CATA)n Simple_repeat Simple_repeat 4 154 0 4 842 248 246 0 15 chr1 33787902 33787968 -163407464 + (CATA)n Simple_repeat Simple_repeat 3 67 0 4 842 270 138 0 0 chr1 33788030 33788088 -163407344 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 842 304 286 11 21 chr1 33789469 33789562 -163405870 + RMER15-int LTR ERVL 4186 4277 -722 4 842 1263 271 168 45 chr1 33789618 33790291 -163405141 + Lx8 LINE L1 6447 7202 -271 4 842 1134 112 89 6 chr1 33790377 33790556 -163404876 - B2_Mm2 SINE B2 0 195 2 4 842 367 290 20 0 chr1 33791892 33791992 -163403440 + PB1D10 SINE Alu 15 116 -1 4 842 277 312 24 168 chr1 33792149 33792399 -163403033 - B4A SINE B4 -69 223 10 4 842 219 281 124 0 chr1 33792550 33792639 -163402793 - B1F SINE Alu -20 129 30 4 842 363 182 10 102 chr1 33793352 33793548 -163401884 + C-rich Low_complexity Low_complexity 3 180 0 5 842 889 89 111 0 chr1 33794236 33794371 -163401061 + B1_Mur4 SINE Alu 1 150 0 5 842 278 212 134 74 chr1 33794528 33794648 -163400784 + B1_Mm SINE Alu 1 134 -15 5 842 1264 82 31 37 chr1 33794794 33794985 -163400447 - B2_Mm1t SINE B2 0 193 4 5 842 198 103 0 0 chr1 33797562 33797591 -163397841 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 5 842 278 237 184 51 chr1 33798070 33798168 -163397264 - BC1_Mm scRNA scRNA -41 111 1 5 842 1197 69 19 0 chr1 33800142 33800302 -163395130 + B2_Mm2 SINE B2 2 164 -31 5 842 37 0 0 0 chr1 33800302 33800339 -163395093 + AT_rich Low_complexity Low_complexity 1 37 0 5 842 686 236 176 0 chr1 33800450 33800632 -163394800 + B3 SINE B2 2 215 -1 5 842 1229 41 0 0 chr1 33800634 33800779 -163394653 + B1_Mus2 SINE Alu 1 145 -2 5 842 210 118 0 0 chr1 33800786 33800820 -163394612 + (A)n Simple_repeat Simple_repeat 1 34 0 5 842 677 198 25 0 chr1 33800849 33800970 -163394462 - B1_Mur1 SINE Alu -21 128 5 5 842 200 35 35 0 chr1 33801033 33801062 -163394370 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 842 464 212 25 74 chr1 33801323 33801445 -163393987 + B3A SINE B2 76 191 -7 5 842 1300 20 0 0 chr1 33801646 33801793 -163393639 + B1_Mm SINE Alu 1 147 0 5 842 276 30 0 0 chr1 33801795 33801828 -163393604 + (A)n Simple_repeat Simple_repeat 1 33 0 5 842 1189 55 7 0 chr1 33802066 33802211 -163393221 + B1_Mus2 SINE Alu 2 147 0 5 842 308 359 141 18 chr1 33802334 33802561 -163392871 + L1MC LINE L1 5512 5766 -2116 5 842 1146 110 0 30 chr1 33804342 33804511 -163390921 + B2_Mm2 SINE B2 1 164 -31 5 842 229 247 115 106 chr1 33805296 33805400 -163390032 + MT2B LTR ERVL 160 264 -337 5 842 508 164 140 35 chr1 33805322 33805436 -163389996 + B1_Mus2 SINE Alu 20 145 -2 5 842 231 218 76 0 chr1 33805480 33805563 -163389869 - PB1D7 SINE Alu -25 95 2 5 842 189 0 0 0 chr1 33805941 33805962 -163389470 + (CCA)n Simple_repeat Simple_repeat 2 22 0 5 842 735 197 137 22 chr1 33806086 33806268 -163389164 - B3 SINE B2 -12 204 2 5 842 363 60 0 0 chr1 33806802 33806852 -163388580 + (T)n Simple_repeat Simple_repeat 1 50 0 5 842 1267 34 0 0 chr1 33806852 33806999 -163388433 - B1_Mus2 SINE Alu 0 147 1 5 842 1353 82 16 21 chr1 33807002 33807190 -163388242 - B2_Mm2 SINE B2 -4 191 5 5 842 216 0 0 0 chr1 33807601 33807625 -163387807 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 842 1224 56 0 0 chr1 33807694 33807837 -163387595 + B1_Mus2 SINE Alu 1 143 -4 5 842 407 0 0 60 chr1 33807839 33807906 -163387526 + (GGAAA)n Simple_repeat Simple_repeat 3 65 0 5 842 1230 47 0 0 chr1 33808588 33808736 -163386696 + B1_Mus1 SINE Alu 1 148 0 5 842 1209 54 7 0 chr1 33808770 33808917 -163386515 + B1_Mus1 SINE Alu 1 148 0 5 842 609 14 0 0 chr1 33809013 33809083 -163386349 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 5 842 1268 214 47 17 chr1 33809316 33809615 -163385817 - MTC LTR MaLR 0 421 114 5 842 1259 41 0 0 chr1 33809623 33809770 -163385662 + B1_Mus2 SINE Alu 1 147 0 5 842 971 156 133 15 chr1 33809781 33809976 -163385456 + URR1B DNA MER1_type 1 218 -7 5 842 386 243 29 10 chr1 33809981 33809993 -163385439 - MTC LTR MaLR -311 110 98 5 842 1213 119 10 25 chr1 33809993 33810191 -163385241 - B2_Mm2 SINE B2 0 195 1 5 842 386 243 29 10 chr1 33810191 33810282 -163385150 - MTC LTR MaLR -324 97 5 5 842 288 0 0 0 chr1 33810301 33810333 -163385099 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 842 541 273 145 0 chr1 33810340 33810512 -163384920 - ID_B1 SINE B4 -1 223 27 5 842 481 263 122 11 chr1 33811549 33811737 -163383695 - ID_B1 SINE B4 -14 210 2 5 842 209 280 74 0 chr1 33812318 33812404 -163383028 + MIRb SINE MIR 85 179 -97 5 842 26 88 0 0 chr1 33812568 33812636 -163382796 + AT_rich Low_complexity Low_complexity 1 68 0 5 842 23 68 0 0 chr1 33814375 33814419 -163381013 + GC_rich Low_complexity Low_complexity 1 44 0 5 842 685 219 288 0 chr1 33815493 33815785 -163379647 + ORR1C1 LTR MaLR 1 376 -2 5 842 201 343 64 9 chr1 33816156 33816265 -163379167 + L2 LINE L2 2556 2670 -749 5 843 1198 48 7 0 chr1 33816707 33816852 -163378580 - B1_Mus1 SINE Alu -1 147 2 5 843 1333 94 16 10 chr1 33817475 33817669 -163377763 + B2_Mm2 SINE B2 1 195 0 5 843 249 103 77 0 chr1 33817961 33818000 -163377432 - B1F SINE Alu -90 59 18 5 843 33 0 0 0 chr1 33818280 33818313 -163377119 + AT_rich Low_complexity Low_complexity 1 33 0 5 843 1014 176 119 0 chr1 33819361 33819554 -163375878 + B3 SINE B2 1 216 0 5 843 315 71 0 0 chr1 33819859 33819901 -163375531 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 843 649 299 143 39 chr1 33819970 33820538 -163374894 + L1MB4 LINE L1 165 791 -5816 5 843 211 283 62 52 chr1 33821141 33821238 -163374194 - L2c LINE L2 -1 3386 3289 5 843 355 291 28 28 chr1 33821347 33821453 -163373979 + PB1D10 SINE Alu 12 117 0 5 843 900 198 81 14 chr1 33821512 33821652 -163373780 + URR1B DNA MER1_type 2 144 -81 5 843 1301 97 16 0 chr1 33821652 33821838 -163373594 + B2_Mm1t SINE B2 2 190 -3 5 843 900 198 81 14 chr1 33821838 33821907 -163373525 + URR1B DNA MER1_type 145 225 0 5 843 424 247 377 0 chr1 33822114 33822268 -163373164 - ID_B1 SINE B4 -9 215 4 5 843 628 62 0 0 chr1 33824379 33824459 -163370973 + B1_Mur4 SINE Alu 69 148 -2 5 843 241 286 47 12 chr1 33825084 33825169 -163370263 - B4 SINE B4 -126 166 79 5 843 236 354 37 0 chr1 33825184 33825266 -163370166 + B1F1 SINE Alu 1 85 -64 5 843 25 0 0 0 chr1 33825516 33825541 -163369891 + AT_rich Low_complexity Low_complexity 1 25 0 5 843 435 257 0 60 chr1 33825590 33825706 -163369726 - PB1D7 SINE Alu -8 112 4 5 843 503 248 12 99 chr1 33826242 33826403 -163369029 + ID_B1 SINE B4 78 224 0 5 843 359 248 139 0 chr1 33827871 33827972 -163367460 + ID_B1 SINE B4 37 151 -73 5 843 717 261 51 0 chr1 33828091 33828286 -163367146 + B3 SINE B2 2 206 -10 5 843 343 234 312 19 chr1 33828508 33828713 -163366719 + Lx8 LINE L1 6894 7158 -315 5 843 198 209 0 0 chr1 33828821 33828864 -163366568 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 843 575 234 40 8 chr1 33829458 33829583 -163365849 + RSINE1 SINE B4 5 133 -32 5 843 551 301 0 27 chr1 33830146 33830293 -163365139 - ID_B1 SINE B4 0 224 82 5 843 1164 61 0 20 chr1 33830333 33830483 -163364949 + B1_Mus2 SINE Alu 1 147 0 5 843 404 275 121 8 chr1 33832278 33832410 -163363022 + B1F SINE Alu 2 148 -1 5 843 885 157 244 0 chr1 33832458 33832630 -163362802 - B3 SINE B2 -2 214 1 5 843 246 256 0 0 chr1 33832702 33832745 -163362687 + tRNA-Ala-GCY_ tRNA tRNA 4 46 -29 5 843 942 84 23 0 chr1 33835032 33835163 -163360269 - B2_Mm2 SINE B2 -14 181 48 5 843 202 176 0 38 chr1 33835182 33835235 -163360197 + T-rich Low_complexity Low_complexity 4 54 0 5 843 561 206 131 50 chr1 33835251 33835450 -163359982 - B3 SINE B2 0 216 2 5 843 357 318 28 0 chr1 33835451 33835558 -163359874 - PB1D10 SINE Alu -5 112 3 5 843 1247 68 0 0 chr1 33836267 33836413 -163359019 - B1_Mm SINE Alu 0 147 2 5 843 427 196 174 10 chr1 33836453 33836551 -163358881 + PB1D9 SINE Alu 1 114 -6 5 843 225 191 202 50 chr1 33837563 33837662 -163357770 - MIR SINE MIR -6 256 143 5 843 1048 86 65 0 chr1 33837892 33838031 -163357401 + B1_Mus1 SINE Alu 1 148 0 5 843 682 302 16 26 chr1 33838406 33838600 -163356832 + B3A SINE B2 2 193 -5 5 843 225 0 0 0 chr1 33838831 33838856 -163356576 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 843 1574 48 0 45 chr1 33839329 33839527 -163355905 - B2_Mm1t SINE B2 -3 190 2 5 843 532 301 152 9 chr1 33840375 33840586 -163354846 - B4 SINE B4 -12 280 40 5 843 1675 47 0 5 chr1 33841152 33841345 -163354087 + B2_Mm2 SINE B2 2 193 -2 5 843 326 336 26 0 chr1 33841576 33841692 -163353740 - MER58B DNA MER1_type -45 296 178 5 843 1201 82 0 0 chr1 33841694 33841841 -163353591 - B1_Mus1 SINE Alu 0 148 2 5 843 495 0 0 0 chr1 33841957 33842012 -163353420 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 5 843 384 184 146 0 chr1 33842044 33842147 -163353285 + MER2 DNA MER2_type 87 204 -141 5 843 1882 161 113 14 chr1 33842223 33842594 -163352838 + MTC LTR MaLR 14 421 0 5 843 369 217 362 41 chr1 33842864 33843085 -163352347 + B4 SINE B4 1 292 0 5 843 25 31 0 0 chr1 33843197 33843229 -163352203 + AT_rich Low_complexity Low_complexity 1 32 0 5 843 303 263 26 93 chr1 33843573 33843629 -163351803 + L1MCa LINE L1 2148 2204 -4304 5 843 770 203 164 0 chr1 33843629 33843806 -163351626 + B3 SINE B2 1 206 -10 5 843 303 263 26 93 chr1 33843806 33843839 -163351593 + L1MCa LINE L1 2205 2230 -4278 5 843 1192 69 0 0 chr1 33843839 33843983 -163351449 + B1_Mus1 SINE Alu 5 148 0 5 843 303 263 26 93 chr1 33843983 33844043 -163351389 + L1MCa LINE L1 2231 2288 -4220 5 843 279 252 51 17 chr1 33844072 33844189 -163351243 + L1MCa LINE L1 2236 2356 -4152 5 843 516 81 0 0 chr1 33844267 33844341 -163351091 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 843 22 0 0 0 chr1 33844354 33844376 -163351056 + AT_rich Low_complexity Low_complexity 1 22 0 5 843 305 225 37 12 chr1 33844377 33844458 -163350974 + L1MCa LINE L1 2380 2462 -3859 5 843 468 119 30 0 chr1 33844473 33844540 -163350892 + ID4_ SINE ID 2 70 -13 5 843 270 0 0 0 chr1 33844583 33844613 -163350819 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 843 378 221 0 25 chr1 33845441 33845520 -163349912 + MTEb LTR MaLR 13 89 -290 6 843 348 217 228 0 chr1 33845548 33845640 -163349792 + MTEb LTR MaLR 258 370 -9 6 843 283 239 42 0 chr1 33846141 33846212 -163349220 - ID SINE ID -150 74 1 6 843 275 156 19 0 chr1 33846220 33846273 -163349159 - PB1 SINE Alu -7 120 60 6 843 242 294 34 34 chr1 33846273 33846308 -163349124 - ID_B1 SINE B4 -8 216 129 6 843 467 289 30 23 chr1 33846426 33846557 -163348875 - B1F SINE Alu -17 132 1 6 843 419 321 0 9 chr1 33846712 33846819 -163348613 + ID_B1 SINE B4 101 206 -18 6 843 600 183 142 22 chr1 33846826 33846960 -163348472 + B1_Mur4 SINE Alu 1 150 0 6 843 268 381 30 40 chr1 33847746 33847847 -163347585 + PB1 SINE Alu 3 102 -25 6 843 2544 141 54 23 chr1 33848101 33848618 -163346814 - RMER6A LTR ERVK 0 756 224 6 843 1274 41 0 0 chr1 33848813 33848960 -163346472 + B1_Mus2 SINE Alu 1 147 0 6 843 414 220 168 10 chr1 33849519 33849620 -163345812 + PB1D7 SINE Alu 3 119 -1 6 843 783 257 32 16 chr1 33849663 33849849 -163345583 + ID_B1 SINE B4 32 220 -4 6 843 359 237 29 49 chr1 33850990 33851092 -163344340 - PB1D9 SINE Alu -20 100 1 6 843 1392 99 15 20 chr1 33851648 33851843 -163343589 + B2_Mm2 SINE B2 1 194 -1 6 843 549 242 97 0 chr1 33852007 33852131 -163343301 - B1_Mur1 SINE Alu 0 149 14 6 843 297 295 51 13 chr1 33852982 33853061 -163342371 + B1F SINE Alu 13 94 -55 6 843 23 0 0 0 chr1 33853099 33853122 -163342310 + AT_rich Low_complexity Low_complexity 1 23 0 6 843 1188 68 0 0 chr1 33853167 33853306 -163342126 + B1_Mus1 SINE Alu 1 139 -9 6 843 273 29 0 0 chr1 33853306 33853340 -163342092 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 843 599 282 138 5 chr1 33853410 33853606 -163341826 - ID_B1 SINE B4 -2 222 1 6 843 226 256 0 0 chr1 33853699 33853738 -163341694 + B1F SINE Alu 5 43 -106 6 843 888 244 50 106 chr1 33853827 33854130 -163341302 + B4A SINE B4 7 292 0 6 843 645 262 0 26 chr1 33857060 33857213 -163338219 + B1_Mur1 SINE Alu 1 149 0 6 843 1014 261 72 18 chr1 33860729 33861006 -163334426 + B4A SINE B4 1 292 0 6 843 198 103 0 0 chr1 33861020 33861049 -163334383 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 843 312 157 0 0 chr1 33861371 33861429 -163334003 - MIRc SINE MIR -50 218 155 6 843 314 291 100 43 chr1 33862455 33862595 -163332837 + B1F SINE Alu 1 148 -1 6 843 220 259 165 0 chr1 33863432 33863517 -163331915 + PB1D7 SINE Alu 22 120 0 6 843 186 43 0 0 chr1 33864048 33864071 -163331361 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 843 1238 54 7 0 chr1 33864084 33864231 -163331201 - B1_Mus1 SINE Alu 0 148 1 6 843 234 91 0 0 chr1 33864261 33864294 -163331138 + (CCTAG)n Simple_repeat Simple_repeat 1 33 0 6 843 236 326 135 0 chr1 33864484 33864573 -163330859 + B4 SINE B4 98 198 -94 6 843 210 307 93 0 chr1 33864740 33864763 -163330669 + B4 SINE B4 62 143 -149 6 843 279 250 0 0 chr1 33864763 33864815 -163330617 + B1F2 SINE Alu 7 58 -91 6 843 30 0 0 0 chr1 33864865 33864895 -163330537 + AT_rich Low_complexity Low_complexity 1 30 0 6 843 429 211 36 27 chr1 33865219 33865331 -163330101 + MTEa LTR MaLR 267 379 0 6 843 987 89 96 0 chr1 33865353 33865488 -163329944 + B1_Mus1 SINE Alu 1 148 0 6 843 311 222 31 16 chr1 33865592 33865656 -163329776 - B1F1 SINE Alu -84 65 1 6 843 1256 65 142 0 chr1 33866946 33867115 -163328317 + B2_Mm1t SINE B2 1 193 0 6 843 612 0 0 0 chr1 33867258 33867326 -163328106 + (CAGG)n Simple_repeat Simple_repeat 3 70 0 6 843 709 149 8 40 chr1 33867433 33867559 -163327873 - B1_Mur4 SINE Alu -1 149 28 6 843 385 224 280 80 chr1 33867447 33867622 -163327810 - B4 SINE B4 -81 211 2 6 843 200 180 40 0 chr1 33867622 33867672 -163327760 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 843 1145 46 0 0 chr1 33867784 33867914 -163327518 - B1_Mus1 SINE Alu -18 130 1 6 843 610 287 199 33 chr1 33867943 33868249 -163327183 - MTC LTR MaLR 0 421 65 6 843 920 181 0 174 chr1 33868311 33868558 -163326874 + B3 SINE B2 2 205 -11 6 843 250 299 68 114 chr1 33868959 33869091 -163326341 - B4 SINE B4 -70 222 97 6 843 24 32 0 0 chr1 33869202 33869233 -163326199 + AT_rich Low_complexity Low_complexity 1 31 0 6 843 269 270 54 0 chr1 33870000 33870074 -163325358 - MER5A DNA MER1_type -46 143 66 6 843 219 214 0 0 chr1 33871227 33871269 -163324163 + (CCG)n Simple_repeat Simple_repeat 3 44 0 6 843 1217 61 0 7 chr1 33872281 33872430 -163323002 + B1_Mus1 SINE Alu 1 148 0 6 843 416 161 12 0 chr1 33872633 33872714 -163322718 + CT-rich Low_complexity Low_complexity 2 83 0 6 843 4948 175 105 20 chr1 33873045 33873220 -163322212 - MERVL_2A-int LTR ERVL -1188 4573 4399 6 843 5148 49 0 22 chr1 33873220 33873820 -163321612 + LTRIS_Mus LTR ERV1 1 587 0 6 843 4948 175 105 20 chr1 33873820 33874636 -163320796 - MERVL_2A-int LTR ERVL -1363 4398 3498 6 843 264 263 13 0 chr1 33875360 33875436 -163319996 - RMER1C Other Other -2 1340 1264 6 843 3204 275 51 91 chr1 33875375 33875457 -163319975 - Lx8 LINE L1 0 7473 7375 6 843 2360 89 3 109 chr1 33875457 33875823 -163319609 - ORR1A2 LTR MaLR 0 327 1 6 843 3204 275 51 91 chr1 33875823 33876565 -163318867 - Lx8 LINE L1 -99 7374 6684 6 843 1285 41 0 0 chr1 33876565 33876712 -163318720 + B1_Mm SINE Alu 1 147 0 6 843 231 36 0 0 chr1 33876721 33876749 -163318683 + (TAA)n Simple_repeat Simple_repeat 2 29 0 6 843 3204 275 51 91 chr1 33876749 33877426 -163318006 - Lx8 LINE L1 -790 6683 6022 6 843 315 0 0 0 chr1 33877487 33877522 -163317910 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 843 951 65 0 0 chr1 33877522 33877645 -163317787 - B1_Mus1 SINE Alu -3 145 23 6 843 1280 232 74 65 chr1 33877669 33878170 -163317262 - Lx8 LINE L1 -1777 5919 5379 6 843 5168 268 44 112 chr1 33878425 33879988 -163315444 - L1_Mur3 LINE L1 -429 5451 3855 6 843 1157 208 0 14 chr1 33879988 33880198 -163315234 - B3 SINE B2 -4 212 6 6 843 5168 268 44 112 chr1 33880198 33880384 -163315048 - L1_Mur3 LINE L1 -429 3854 3663 6 843 321 26 0 0 chr1 33880384 33880422 -163315010 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 6 843 5168 268 44 112 chr1 33880422 33880790 -163314642 - L1_Mur3 LINE L1 -2218 3662 3281 6 843 2853 253 44 68 chr1 33880787 33880988 -163314444 - L1_Mur3 LINE L1 -3588 2292 2092 6 843 1761 157 60 86 chr1 33880988 33881372 -163314060 - ORR1D1 LTR MaLR 0 374 1 6 843 2853 253 44 68 chr1 33881372 33881410 -163314022 - L1_Mur3 LINE L1 -3789 2091 2066 6 843 3345 34 0 25 chr1 33881410 33881804 -163313628 - L1Md_T LINE L1 0 6582 6199 6 843 2853 276 35 77 chr1 33881804 33882999 -163312433 - L1_Mur3 LINE L1 -3815 2065 905 6 843 3205 54 32 0 chr1 33883131 33883504 -163311928 + IAPEY_LTR LTR ERVK 1 385 0 6 843 617 203 11 11 chr1 33884141 33884320 -163311112 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 843 1585 278 89 117 chr1 33885247 33886116 -163309316 - Lx9 LINE L1 -39 7605 6762 6 843 1144 234 5 14 chr1 33886333 33886550 -163308882 + B3 SINE B2 2 216 0 6 843 412 302 62 41 chr1 33886595 33886630 -163308802 + B1F SINE Alu 1 33 -116 6 843 3401 88 87 11 chr1 33886630 33887100 -163308332 + LTRIS4 LTR ERV1 2 507 0 6 843 412 302 62 41 chr1 33887100 33887209 -163308223 + B1F SINE Alu 34 148 -1 6 843 303 340 36 80 chr1 33887379 33887475 -163307957 - RSINE1 SINE B4 0 165 74 6 843 554 249 178 67 chr1 33887475 33887505 -163307927 + RLTR9A LTR ERVK 1 30 -338 6 843 326 23 23 0 chr1 33887505 33887548 -163307884 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 843 554 249 178 67 chr1 33887548 33887848 -163307584 + RLTR9A LTR ERVK 31 368 0 6 843 303 340 36 80 chr1 33887848 33887863 -163307569 - RSINE1 SINE B4 -92 73 59 6 843 413 284 128 61 chr1 33887918 33888098 -163307334 - B3A SINE B2 -6 192 1 6 843 330 167 0 0 chr1 33888218 33888278 -163307154 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 843 327 203 0 0 chr1 33888444 33888513 -163306919 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 6 843 1089 80 0 0 chr1 33888562 33888699 -163306733 + B1_Mus2 SINE Alu 2 138 -9 6 843 217 51 0 49 chr1 33888699 33888740 -163306692 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 843 988 314 55 58 chr1 33889109 33889650 -163305782 + Lx9 LINE L1 6973 7514 -130 6 843 180 77 0 0 chr1 33889650 33889676 -163305756 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 843 988 314 55 58 chr1 33889676 33889807 -163305625 + Lx9 LINE L1 7515 7643 -1 6 843 447 238 123 31 chr1 33889808 33890003 -163305429 + L1M4 LINE L1 3213 3425 -2721 6 843 316 183 169 0 chr1 33890507 33890578 -163304854 - B3A SINE B2 -113 85 3 6 843 2107 179 76 101 chr1 33890622 33890787 -163304645 - RLTR40 LTR ERVK -12 805 650 6 843 1013 101 7 0 chr1 33890787 33890925 -163304507 - B1_Mus1 SINE Alu -9 139 1 6 843 2107 179 76 101 chr1 33890925 33891408 -163304024 - RLTR40 LTR ERVK -168 649 166 6 843 1492 72 0 10 chr1 33891408 33891605 -163303827 - B2_Mm2 SINE B2 0 195 1 6 843 2107 179 76 101 chr1 33891605 33891640 -163303792 - RLTR40 LTR ERVK -652 165 138 6 843 1122 106 35 23 chr1 33891745 33891905 -163303527 + B2_Mm2 SINE B2 2 166 -29 6 843 1209 62 0 0 chr1 33891905 33892051 -163303381 + B1_Mus2 SINE Alu 2 147 0 6 843 1122 106 35 23 chr1 33892051 33892064 -163303368 + B2_Mm2 SINE B2 167 177 -18 6 843 496 168 0 164 chr1 33892078 33892206 -163303226 - RLTR40 LTR ERVK -651 166 60 6 843 22 0 0 0 chr1 33892223 33892245 -163303187 + AT_rich Low_complexity Low_complexity 1 22 0 6 843 1143 89 0 0 chr1 33892245 33892391 -163303041 - B1_Mm SINE Alu 0 147 2 6 843 596 189 86 8 chr1 33892462 33892648 -163302784 - B3 SINE B2 -2 193 4 6 843 273 57 0 0 chr1 33892651 33892686 -163302746 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 843 2800 58 3 0 chr1 33896301 33896646 -163298786 - ORR1A1 LTR MaLR 0 346 1 6 843 13976 53 18 3 chr1 33896646 33898412 -163297020 - ORR1A1-int LTR MaLR 0 1792 1 6 843 2437 60 6 3 chr1 33898416 33898753 -163296679 - ORR1A1 LTR MaLR -8 338 1 6 843 1392 68 11 0 chr1 33898922 33899099 -163296333 + B2_Mm1t SINE B2 1 179 -14 6 843 301 146 0 35 chr1 33899158 33899215 -163296217 + B2_Mm2 SINE B2 47 101 -94 6 843 27 49 0 0 chr1 33899222 33899263 -163296169 + AT_rich Low_complexity Low_complexity 1 41 0 6 843 252 306 35 35 chr1 33899664 33899779 -163295653 - RSINE1 SINE B4 -17 148 34 6 843 450 213 0 41 chr1 33899798 33899896 -163295536 - RMER1C Other Other -9 1333 1240 6 843 206 32 0 31 chr1 33899913 33899945 -163295487 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 843 1169 55 0 0 chr1 33899945 33900084 -163295348 - B1_Mm SINE Alu -7 140 2 7 843 447 35 0 0 chr1 33900104 33900161 -163295271 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 843 447 255 97 8 chr1 33900722 33900870 -163294562 + ORR1D2 LTR MaLR 1 169 -190 7 843 2807 130 166 8 chr1 33901192 33901697 -163293735 + RMER4B LTR ERVK 1 585 0 7 843 1170 34 7 52 chr1 33901747 33901901 -163293531 - B1_Mus1 SINE Alu -1 147 1 7 843 288 227 26 13 chr1 33902056 33902132 -163293300 + (TATG)n Simple_repeat Simple_repeat 1 77 0 7 843 654 284 40 35 chr1 33902132 33902333 -163293099 - B3A SINE B2 -8 208 7 7 843 216 0 0 0 chr1 33902661 33902685 -163292747 + (T)n Simple_repeat Simple_repeat 1 24 0 7 843 309 51 0 0 chr1 33903387 33903426 -163292006 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 843 615 98 164 19 chr1 33903452 33903556 -163291876 - PB1D9 SINE Alu 0 120 2 7 843 504 309 52 54 chr1 33903609 33904051 -163291381 - MMTV-int LTR ERVK -3998 3255 2815 7 843 1177 57 0 0 chr1 33904072 33904213 -163291219 + B1_Mus2 SINE Alu 5 145 -2 7 843 48 43 0 0 chr1 33904213 33904282 -163291150 + AT_rich Low_complexity Low_complexity 1 69 0 7 843 5161 42 50 29 chr1 33904282 33904949 -163290483 - L1_Mus2 LINE L1 -1 6565 5885 7 843 1529 159 238 6 chr1 33905353 33905676 -163289756 + RMER10B LTR ERVL 1 398 0 7 843 985 24 0 0 chr1 33905732 33905858 -163289574 - B1_Mm SINE Alu -21 126 1 7 843 1348 104 0 49 chr1 33906312 33906515 -163288917 + B2_Mm2 SINE B2 3 195 0 7 843 449 204 54 11 chr1 33907027 33907153 -163288279 + MTD LTR MaLR 270 411 -8 7 843 2169 215 36 48 chr1 33907153 33907548 -163287884 + MTD-int LTR MaLR 1 394 -864 7 843 1299 103 5 35 chr1 33907548 33907749 -163287683 + B2_Mm2 SINE B2 1 195 0 7 843 2169 215 36 48 chr1 33907749 33907911 -163287521 + MTD-int LTR MaLR 395 551 -707 7 843 180 219 0 0 chr1 33908017 33908058 -163287374 + (CACG)n Simple_repeat Simple_repeat 3 43 0 7 843 310 258 41 35 chr1 33908437 33908606 -163286826 + (CTCA)n Simple_repeat Simple_repeat 1 170 0 7 843 318 236 6 9 chr1 33908730 33908812 -163286620 + MTD-int LTR MaLR 547 608 -650 7 843 21 0 0 0 chr1 33908912 33908933 -163286499 + AT_rich Low_complexity Low_complexity 1 21 0 7 843 881 149 0 0 chr1 33909099 33909233 -163286199 + B1_Mus2 SINE Alu 2 135 -12 7 843 56 55 0 0 chr1 33910329 33910420 -163285012 + AT_rich Low_complexity Low_complexity 1 91 0 7 843 1737 190 127 0 chr1 33910595 33911005 -163284427 + L1_Mur3 LINE L1 291 752 -6960 7 843 826 81 0 8 chr1 33911353 33911478 -163283954 + B1_Mus1 SINE Alu 25 148 0 7 843 1490 165 26 7 chr1 33911493 33911798 -163283634 + L1_Mur3 LINE L1 807 1117 -6595 7 843 8134 235 56 132 chr1 33911799 33913114 -163282318 + L1_Mur1 LINE L1 2086 3512 -2374 7 843 1232 28 7 0 chr1 33913114 33913259 -163282173 + B1_Mm SINE Alu 2 147 0 7 843 8134 235 56 132 chr1 33913259 33913291 -163282141 + L1_Mur1 LINE L1 3513 3542 -2344 7 843 1223 72 0 0 chr1 33913291 33913458 -163281974 - B2_Mm2 SINE B2 -26 169 3 7 843 8134 235 56 132 chr1 33913458 33914272 -163281160 + L1_Mur1 LINE L1 3543 4316 -1570 7 843 626 183 0 0 chr1 33914272 33914387 -163281045 + B1_Mur4 SINE Alu 28 142 -8 7 843 8134 235 56 132 chr1 33914387 33915337 -163280095 + L1_Mur1 LINE L1 4317 5222 -664 7 843 352 273 0 0 chr1 33915337 33915425 -163280007 + ID_B1 SINE B4 121 208 -16 7 843 269 164 15 103 chr1 33915493 33915561 -163279871 - L1M3 LINE L1 -1232 4908 4847 7 843 919 310 49 12 chr1 33915561 33915988 -163279444 + L1MA5 LINE L1 5455 5897 -403 7 843 532 276 98 105 chr1 33916389 33916789 -163278643 + MLT2D LTR ERVL 1 397 0 7 843 1648 149 39 0 chr1 33917144 33917426 -163278006 + RLTR14 LTR ERV1 12 304 -78 7 843 304 255 140 101 chr1 33917595 33917774 -163277658 - MER20 DNA MER1_type 0 219 34 7 843 236 200 0 37 chr1 33918957 33919066 -163276366 + (TA)n Simple_repeat Simple_repeat 1 105 0 7 843 246 62 0 0 chr1 33919072 33919104 -163276328 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 843 472 277 8 15 chr1 33920276 33920408 -163275024 - ID_B1 SINE B4 -8 216 86 7 843 219 146 0 0 chr1 33920975 33921016 -163274416 + (T)n Simple_repeat Simple_repeat 1 41 0 7 843 1063 43 65 7 chr1 33921018 33921157 -163274275 - B1_Mus1 SINE Alu 0 148 2 7 843 560 254 60 78 chr1 33923118 33923400 -163272032 + ORR1E LTR MaLR 83 359 0 7 843 1263 159 51 9 chr1 33924620 33924836 -163270596 + URR1B DNA MER1_type 1 225 0 7 843 418 294 24 32 chr1 33925061 33925080 -163270352 - B3A SINE B2 -9 189 171 7 843 309 26 0 0 chr1 33925080 33925118 -163270314 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 843 418 294 24 32 chr1 33925118 33925221 -163270211 - B3A SINE B2 -28 170 68 7 843 865 118 15 0 chr1 33925293 33925429 -163270003 - RMER6B LTR ERVK 0 461 324 7 843 413 254 59 0 chr1 33925499 33925617 -163269815 + ID_B1 SINE B4 2 126 -98 7 843 26 0 0 0 chr1 33925919 33925945 -163269487 + AT_rich Low_complexity Low_complexity 1 26 0 7 843 555 242 51 32 chr1 33925954 33926112 -163269320 - RSINE1 SINE B4 0 165 5 7 843 348 297 119 45 chr1 33926458 33926744 -163268688 - HAL1 LINE L1 -745 1762 1456 7 843 1321 92 38 0 chr1 33926819 33927003 -163268429 - B2_Mm2 SINE B2 -3 192 2 7 843 269 225 235 13 chr1 33927393 33927546 -163267886 - HAL1 LINE L1 -1332 1175 989 7 843 225 0 0 0 chr1 33927666 33927691 -163267741 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 843 520 302 0 7 chr1 33927696 33927836 -163267596 - RSINE1 SINE B4 -16 149 11 7 843 378 0 0 0 chr1 33928547 33928589 -163266843 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 843 1066 196 360 16 chr1 33929005 33929316 -163266116 - MTD LTR MaLR 0 419 2 7 843 1701 21 0 0 chr1 33929381 33929571 -163265861 + B2_Mm1a SINE B2 1 190 -3 7 843 271 298 29 58 chr1 33929724 33929895 -163265537 + L2a LINE L2 3138 3303 -123 7 843 740 137 50 7 chr1 33930650 33930790 -163264642 + B2_Mm2 SINE B2 34 179 -16 7 843 1127 208 14 0 chr1 33930832 33931039 -163264393 + B3 SINE B2 4 213 -3 7 843 226 237 169 13 chr1 33931371 33931448 -163263984 - MTEa LTR MaLR -4 375 287 7 843 1040 60 20 0 chr1 33931520 33931670 -163263762 - B2_Mm1t SINE B2 -40 153 1 7 843 653 267 68 42 chr1 33931671 33932017 -163263415 - L1_Rod LINE L1 -664 5492 5076 7 843 772 300 109 35 chr1 33932010 33932782 -163262650 + L1M2 LINE L1 4324 5090 -757 7 843 407 241 43 26 chr1 33932797 33932912 -163262520 - PB1D10 SINE Alu 0 117 1 7 843 1255 182 9 18 chr1 33932985 33933203 -163262229 - B3 SINE B2 0 216 1 7 843 255 31 0 0 chr1 33933248 33933280 -163262152 + (A)n Simple_repeat Simple_repeat 1 32 0 7 843 217 311 72 72 chr1 33933319 33933499 -163261933 - MIRb SINE MIR -8 260 81 7 843 304 261 8 87 chr1 33934087 33934107 -163261325 + Lx8 LINE L1 7355 7372 -101 7 843 2135 97 58 3 chr1 33934107 33934416 -163261016 + ORR1A3 LTR MaLR 1 326 0 7 843 304 261 8 87 chr1 33934416 33934521 -163260911 + Lx8 LINE L1 7373 7470 -3 7 843 357 277 207 33 chr1 33936080 33936409 -163259023 + L1M5 LINE L1 4427 4812 -1334 7 843 252 369 0 0 chr1 33936591 33936713 -163258719 + (CATA)n Simple_repeat Simple_repeat 2 123 0 7 843 321 246 80 51 chr1 33936936 33937073 -163258359 + L1M5 LINE L1 5310 5450 -674 7 843 1449 80 16 0 chr1 33937929 33938116 -163257316 - B2_Mm2 SINE B2 -5 190 1 7 843 563 202 70 0 chr1 33938356 33938485 -163256947 + RLTR40 LTR ERVK 1 138 -679 7 843 586 198 6 77 chr1 33938500 33938518 -163256914 + ID_B1 SINE B4 67 223 0 7 843 1013 62 7 33 chr1 33938518 33938669 -163256763 + B1_Mus2 SINE Alu 1 147 0 7 843 1883 173 85 58 chr1 33938672 33939176 -163256256 + RLTR40 LTR ERVK 158 675 -142 7 843 505 178 313 0 chr1 33939176 33939339 -163256093 + RLTR40 LTR ERVK 597 810 -7 7 843 1092 126 66 0 chr1 33940648 33940812 -163254620 + B2_Mm2 SINE B2 1 176 -19 7 843 1515 58 16 5 chr1 33940812 33941003 -163254429 - B2_Mm2 SINE B2 -1 194 2 7 843 225 0 0 0 chr1 33941003 33941028 -163254404 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 7 843 1092 126 66 0 chr1 33941028 33941045 -163254387 + B2_Mm2 SINE B2 177 193 -2 7 843 279 326 23 0 chr1 33941819 33941905 -163253527 + PB1D10 SINE Alu 1 88 -29 7 843 270 0 0 0 chr1 33942059 33942089 -163253343 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 843 1593 42 11 0 chr1 33942162 33942352 -163253080 - B2_Mm1a SINE B2 0 193 2 7 843 379 293 8 8 chr1 33942353 33942487 -163252945 - L1M2 LINE L1 -807 5490 5357 7 843 371 176 14 0 chr1 33942522 33942596 -163252836 - L1_Mur3 LINE L1 -1303 4577 4503 7 843 247 322 16 50 chr1 33942684 33942805 -163252627 - Cheshire DNA MER1_type -280 2140 2024 7 843 1553 268 79 8 chr1 33942922 33943527 -163251905 + L1_Mur3 LINE L1 3628 4275 -1605 7 843 35 0 0 0 chr1 33943574 33943609 -163251823 + AT_rich Low_complexity Low_complexity 1 35 0 7 843 929 62 127 30 chr1 33943609 33943743 -163251689 - B1_Mm SINE Alu 0 147 1 7 843 1005 96 0 7 chr1 33943792 33943939 -163251493 + B1_Mus1 SINE Alu 3 148 0 7 843 204 148 49 0 chr1 33943939 33944000 -163251432 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 7 843 879 317 66 70 chr1 33944033 33944820 -163250612 + L1_Mur3 LINE L1 4394 5177 -703 7 843 1101 79 0 0 chr1 33944820 33944959 -163250473 + B1_Mm SINE Alu 1 139 -8 7 843 184 30 61 0 chr1 33944959 33944992 -163250440 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 843 282 360 85 24 chr1 33945214 33945379 -163250053 - ORR1E LTR MaLR -184 175 1 7 843 466 289 49 0 chr1 33945481 33945623 -163249809 + RSINE1 SINE B4 2 150 -15 7 843 382 307 336 9 chr1 33945656 33945995 -163249437 + L1MB3 LINE L1 5413 5861 -310 7 843 778 204 302 44 chr1 33946067 33946518 -163248914 - RMER2 LTR ERV1 0 567 1 7 843 350 189 211 118 chr1 33946946 33947150 -163248282 + URR1A DNA MER1_type 2 224 -2 7 843 355 322 39 108 chr1 33947154 33947412 -163248020 + ORR1E LTR MaLR 114 353 -6 7 843 430 235 149 5 chr1 33947441 33947629 -163247803 + L1MB3 LINE L1 5900 6114 -69 7 105 243 225 0 0 chr1 33947632 33947703 -163247729 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 844 1007 166 53 10 chr1 33947868 33948075 -163247357 - B3 SINE B2 0 216 1 7 844 365 167 26 0 chr1 33948876 33948954 -163246478 - MTD LTR MaLR -1 418 339 8 844 21 0 0 0 chr1 33949008 33949029 -163246403 + AT_rich Low_complexity Low_complexity 1 21 0 8 844 1016 52 96 0 chr1 33949502 33949637 -163245795 + B1_Mus1 SINE Alu 1 148 0 8 844 697 206 53 27 chr1 33949948 33950098 -163245334 - RSINE1 SINE B4 -9 156 3 8 844 902 54 23 0 chr1 33951111 33951240 -163244192 - B1_Mm SINE Alu -14 133 2 8 844 303 140 0 0 chr1 33952938 33952988 -163242444 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 844 234 0 0 0 chr1 33953327 33953353 -163242079 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 8 844 463 231 10 0 chr1 33953454 33953558 -163241874 + MER2 DNA MER2_type 190 294 -51 8 844 232 211 58 0 chr1 33953918 33953970 -163241462 + MIR SINE MIR 105 159 -103 8 844 704 274 160 25 chr1 33954583 33954901 -163240531 - MTEa LTR MaLR 0 379 19 8 844 319 247 0 72 chr1 33955553 33955636 -163239796 + ID4_ SINE ID 3 79 -4 8 844 411 21 0 0 chr1 33955658 33955706 -163239726 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 844 723 104 0 0 chr1 33956634 33956740 -163238692 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 8 844 762 232 0 0 chr1 33956758 33956900 -163238532 + B1_Mur1 SINE Alu 1 142 -7 8 844 183 220 0 0 chr1 33956914 33956964 -163238468 + A-rich Low_complexity Low_complexity 1 50 0 8 844 1148 68 7 0 chr1 33957967 33958113 -163237319 - B1_Mus1 SINE Alu 0 148 2 8 844 658 286 25 35 chr1 33958118 33958317 -163237115 - B3A SINE B2 0 198 2 8 844 258 302 82 57 chr1 33958367 33958525 -163236907 - RSINE1 SINE B4 -1 164 3 8 844 1227 48 0 7 chr1 33958563 33958711 -163236721 - B1_Mm SINE Alu 0 147 1 8 844 4771 194 98 1 chr1 33958717 33959735 -163235697 - Lx9 LINE L1 -1 7643 6527 8 844 642 160 10 0 chr1 33959730 33959830 -163235602 + Lx9 LINE L1 6440 6540 -1104 8 844 515 335 30 21 chr1 33959957 33960192 -163235240 + MTE2b LTR MaLR 134 370 -9 8 844 457 285 79 65 chr1 33961108 33961322 -163234110 - B4 SINE B4 -74 218 2 8 844 579 29 0 0 chr1 33961477 33961546 -163233886 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 844 32 0 0 0 chr1 33961558 33961590 -163233842 + AT_rich Low_complexity Low_complexity 1 32 0 8 844 27 73 0 0 chr1 33964541 33964596 -163230836 + GC_rich Low_complexity Low_complexity 1 55 0 8 844 219 239 8 57 chr1 33964620 33964744 -163230688 + (CCCCG)n Simple_repeat Simple_repeat 4 121 0 8 844 276 212 29 43 chr1 33964972 33965110 -163230322 + (CCGCG)n Simple_repeat Simple_repeat 2 137 0 8 844 23 33 0 0 chr1 33966966 33966996 -163228436 + AT_rich Low_complexity Low_complexity 1 30 0 8 844 856 128 14 35 chr1 33967059 33967204 -163228228 + B1_Mur2 SINE Alu 2 143 -6 8 844 199 173 0 37 chr1 33967204 33967258 -163228174 + GA-rich Low_complexity Low_complexity 1 52 0 8 844 216 217 120 80 chr1 33967646 33967746 -163227686 + L2c LINE L2 3283 3386 -1 8 844 545 220 42 0 chr1 33967886 33968004 -163227428 - B1_Mur2 SINE Alu 0 149 27 8 844 225 0 0 0 chr1 33968399 33968424 -163227008 + (T)n Simple_repeat Simple_repeat 1 25 0 8 844 225 0 0 0 chr1 33968829 33968854 -163226578 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 844 288 0 0 0 chr1 33969139 33969171 -163226261 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 844 2401 51 0 0 chr1 33970126 33970420 -163225012 - L1Md_A LINE L1 0 6582 6289 8 844 1229 54 0 0 chr1 33970903 33971051 -163224381 - B1_Mus1 SINE Alu 0 148 1 8 844 217 205 0 0 chr1 33972048 33972087 -163223345 + (CGAG)n Simple_repeat Simple_repeat 2 40 0 8 844 210 160 0 0 chr1 33972114 33972164 -163223268 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 844 613 108 0 35 chr1 33972180 33972295 -163223137 + (TGG)n Simple_repeat Simple_repeat 2 112 0 8 844 893 291 67 42 chr1 33972645 33973140 -163222292 + L1_Rod LINE L1 5158 5664 -183 8 844 1446 173 89 32 chr1 33973145 33973492 -163221940 - ORR1D1 LTR MaLR -7 367 1 8 844 1272 34 0 0 chr1 33973794 33973942 -163221490 - B1_Mus1 SINE Alu 0 148 1 8 844 2329 117 3 0 chr1 33974681 33975007 -163220425 + ORR1A2 LTR MaLR 1 327 0 8 844 186 167 0 0 chr1 33975045 33975081 -163220351 + GA-rich Low_complexity Low_complexity 3 38 0 8 844 272 289 144 7 chr1 33975896 33976049 -163219383 + L1_Mur3 LINE L1 1467 1640 -4240 8 844 523 300 57 30 chr1 33976049 33976314 -163219118 + L1_Mur3 LINE L1 2486 2757 -3123 8 844 715 180 25 0 chr1 33976361 33976483 -163218949 - B1_Mur2 SINE Alu -24 125 1 8 844 848 284 81 21 chr1 33976495 33976927 -163218505 + L1M2 LINE L1 2783 3240 -2903 8 844 354 339 64 29 chr1 33976927 33977100 -163218332 + MTE2a LTR MaLR 4 182 -237 8 844 446 209 25 42 chr1 33977130 33977250 -163218182 + MTE2a LTR MaLR 262 379 0 8 844 397 340 16 20 chr1 33977250 33977499 -163217933 + L1M2 LINE L1 3256 3503 -2637 8 844 405 251 12 6 chr1 33977823 33977991 -163217441 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 8 844 187 172 15 15 chr1 33978008 33978044 -163217388 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 8 844 185 108 27 0 chr1 33978044 33978081 -163217351 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 8 844 187 172 15 15 chr1 33978081 33978109 -163217323 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 8 844 1735 306 92 20 chr1 33978130 33978954 -163216478 + L1_Mur3 LINE L1 3489 4363 -1517 8 844 258 32 0 0 chr1 33978954 33978985 -163216447 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 8 844 1735 306 92 20 chr1 33978985 33979066 -163216366 + L1_Mur3 LINE L1 4364 4458 -1422 8 844 264 290 251 17 chr1 33979666 33980013 -163215419 + L1MEf LINE L1 1660 2087 -4155 8 844 311 291 36 9 chr1 33980290 33980401 -163215031 + L1MEf LINE L1 2145 2258 -3984 8 844 221 322 113 73 chr1 33980407 33980531 -163214901 + RSINE1 SINE B4 3 131 -34 8 844 681 123 0 0 chr1 33980532 33980638 -163214794 + (TC)n Simple_repeat Simple_repeat 1 106 0 8 844 615 255 176 0 chr1 33980678 33980866 -163214566 + ID_B1 SINE B4 1 221 -3 8 844 286 286 79 18 chr1 33980957 33981071 -163214361 + L1MEf LINE L1 2354 2474 -3672 8 844 270 0 0 0 chr1 33981228 33981258 -163214174 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 844 561 185 89 32 chr1 33981270 33981393 -163214039 - B1_Mur3 SINE Alu -11 138 9 8 844 228 309 41 10 chr1 33981496 33981594 -163213838 + L1MD LINE L1 2864 2964 -3182 8 844 936 140 28 0 chr1 33981777 33981920 -163213512 + B1_Mus1 SINE Alu 2 148 0 8 844 927 146 0 0 chr1 33982910 33983054 -163212378 + B1_Mur4 SINE Alu 6 149 -1 8 844 234 0 0 0 chr1 33983076 33983102 -163212330 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 844 800 203 123 0 chr1 33983161 33983348 -163212084 - B3 SINE B2 -6 210 1 8 844 494 274 30 82 chr1 33984102 33984333 -163211099 + MTEa LTR MaLR 3 221 -158 8 844 22 0 0 0 chr1 33984757 33984779 -163210653 + AT_rich Low_complexity Low_complexity 1 22 0 8 844 682 180 0 0 chr1 33985486 33985614 -163209818 - Lx2B LINE L1 -4 6996 6869 8 844 324 0 0 0 chr1 33985852 33985888 -163209544 + (TTA)n Simple_repeat Simple_repeat 2 37 0 8 844 239 336 56 0 chr1 33985888 33985900 -163209532 - B1_Mur3 SINE Alu -10 139 27 8 844 420 242 21 0 chr1 33985900 33985995 -163209437 - ID_B1 SINE B4 -20 204 108 8 844 265 295 60 35 chr1 33986692 33986808 -163208624 + L1MD2 LINE L1 530 648 -5899 8 844 376 252 18 0 chr1 33986959 33987065 -163208367 + L1MD2 LINE L1 3898 4010 -2534 8 844 474 288 251 0 chr1 33987483 33987702 -163207730 + B4A SINE B4 5 278 -14 8 844 224 131 0 21 chr1 33987724 33987771 -163207661 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 844 233 240 93 0 chr1 33987908 33987983 -163207449 - ID4_ SINE ID 0 83 2 8 844 394 283 49 16 chr1 33988009 33988131 -163207301 + RSINE1 SINE B4 2 127 -38 8 844 270 0 0 0 chr1 33988131 33988161 -163207271 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 844 1353 77 5 11 chr1 33989474 33989658 -163205774 + B2_Mm2 SINE B2 2 184 -11 8 844 282 56 0 0 chr1 33990255 33990291 -163205141 + (A)n Simple_repeat Simple_repeat 1 36 0 8 844 1413 89 11 0 chr1 33990946 33991136 -163204296 - B2_Mm1t SINE B2 0 193 2 8 844 2334 171 2 17 chr1 33991197 33991608 -163203824 - MTB_Mm LTR MaLR -1 406 2 8 844 183 26 0 93 chr1 33991715 33991758 -163203674 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 8 844 347 259 83 41 chr1 33992537 33992682 -163202750 + MER2 DNA MER2_type 72 222 -123 8 844 180 0 0 0 chr1 33993481 33993501 -163201931 + (T)n Simple_repeat Simple_repeat 1 20 0 8 844 920 71 0 0 chr1 33994234 33994360 -163201072 + B1_Mm SINE Alu 1 126 -21 8 844 342 0 0 0 chr1 33995402 33995440 -163199992 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 844 243 0 0 0 chr1 33995454 33995481 -163199951 + (GA)n Simple_repeat Simple_repeat 1 27 0 8 844 580 273 0 7 chr1 33995534 33995678 -163199754 - B1F1 SINE Alu -1 148 6 8 844 640 293 19 4 chr1 33996212 33996425 -163199007 + B3A SINE B2 1 214 -2 8 844 22 0 0 0 chr1 33996426 33996448 -163198984 + AT_rich Low_complexity Low_complexity 1 22 0 8 844 336 296 0 12 chr1 33997049 33997131 -163198301 + B1F1 SINE Alu 1 81 -68 8 844 706 134 8 16 chr1 33997934 33998063 -163197369 - B1_Mur3 SINE Alu -8 141 14 8 844 295 281 50 88 chr1 33998063 33998089 -163197343 - B4A SINE B4 -68 219 71 8 844 216 0 0 0 chr1 33998118 33998142 -163197290 + (TGG)n Simple_repeat Simple_repeat 3 26 0 8 844 233 0 0 59 chr1 33999207 33999241 -163196191 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 8 844 1229 34 0 0 chr1 33999299 33999445 -163195987 + B1_Mm SINE Alu 2 147 0 8 844 207 0 0 0 chr1 33999445 33999468 -163195964 + (A)n Simple_repeat Simple_repeat 1 23 0 8 844 945 216 142 39 chr1 33999524 33999856 -163195576 - MTEb LTR MaLR -11 368 3 8 844 427 143 0 133 chr1 34000280 34000385 -163195047 + MT2B LTR ERVL 167 257 -344 1 844 961 47 8 0 chr1 34000299 34000427 -163195005 + B1_Mus1 SINE Alu 18 146 -2 2 844 222 91 0 0 chr1 34000591 34000624 -163194808 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 844 1302 245 45 26 chr1 34000764 34001146 -163194286 - MTD LTR MaLR -2 417 29 4 844 207 0 0 0 chr1 34001147 34001170 -163194262 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 5 844 282 56 0 0 chr1 34001211 34001247 -163194185 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 844 254 151 38 0 chr1 34003144 34003197 -163192235 + CT-rich Low_complexity Low_complexity 3 57 0 7 844 824 146 0 28 chr1 34003203 34003344 -163192088 - B1_Mus1 SINE Alu -6 142 6 8 844 332 264 181 43 chr1 34004258 34004277 -163191155 - ID_B1 SINE B4 -46 246 161 9 844 524 194 0 27 chr1 34004277 34004388 -163191044 - PB1D10 SINE Alu -1 116 9 1 844 332 264 181 43 chr1 34004388 34004403 -163191029 - ID_B1 SINE B4 -46 160 81 9 844 459 0 0 0 chr1 34004403 34004454 -163190978 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 844 364 195 61 0 chr1 34004454 34004536 -163190896 - B1_Mur4 SINE Alu -63 87 1 1 844 467 312 35 0 chr1 34005705 34005846 -163189586 - MER58A DNA MER1_type -20 204 59 1 844 2055 98 5 126 chr1 34006370 34006744 -163188688 - ORR1A4 LTR MaLR 0 329 1 1 844 312 311 128 0 chr1 34007201 34007349 -163188083 + Lx9 LINE L1 899 1065 -6543 1 844 7693 34 1 36 chr1 34007385 34008897 -163186535 - L1Md_A LINE L1 0 6582 5142 1 844 2474 37 3 3 chr1 34008898 34009197 -163186235 - L1_Mus1 LINE L1 -7 6560 6262 1 844 2238 195 150 8 chr1 34009198 34009451 -163185981 + Lx9 LINE L1 1053 1341 -6267 1 844 1349 255 57 6 chr1 34009451 34009802 -163185630 + ORR1D2 LTR MaLR 2 370 0 1 844 2238 250 136 18 chr1 34009802 34010559 -163184873 + Lx9 LINE L1 1342 2196 -3651 1 844 456 128 43 0 chr1 34010564 34010658 -163184774 + L1_Mus4 LINE L1 6539 6636 0 1 844 407 114 0 102 chr1 34010697 34010795 -163184637 + RMER3D-int LTR ERVK 2753 2840 -2 2 844 1796 124 20 3 chr1 34010797 34011089 -163184343 + RLTR31A_Mm LTR ERVK 1 297 -287 2 844 1336 240 32 78 chr1 34011116 34011302 -163184130 + Lx9 LINE L1 2198 2388 -3459 1 844 2466 89 9 0 chr1 34011302 34011626 -163183806 + ORR1A2 LTR MaLR 1 327 0 2 844 1336 240 32 78 chr1 34011626 34011914 -163183518 + Lx9 LINE L1 2389 2650 -3197 1 844 3578 275 70 44 chr1 34011912 34012227 -163183205 + Lx9 LINE L1 4050 4361 -1486 1 844 378 0 0 0 chr1 34012227 34012269 -163183163 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 844 3578 275 70 44 chr1 34012269 34013447 -163181985 + Lx9 LINE L1 4362 5582 -265 1 844 266 315 0 0 chr1 34013463 34013552 -163181880 + Lx9 LINE L1 5888 5976 -1668 1 844 1015 101 0 20 chr1 34013643 34013780 -163181652 + B1_Mus1 SINE Alu 1 135 -13 2 844 192 77 0 0 chr1 34013780 34013806 -163181626 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 844 1015 101 0 20 chr1 34013806 34013819 -163181613 + B1_Mus1 SINE Alu 136 148 0 2 844 7140 116 56 14 chr1 34013869 34015538 -163179894 + Lx LINE L1 4919 6654 0 2 844 1781 302 40 19 chr1 34015579 34015598 -163179834 + Lx9 LINE L1 6326 6346 -1298 1 844 255 60 0 57 chr1 34015598 34015651 -163179781 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 2 844 1781 302 40 19 chr1 34015651 34016261 -163179171 + Lx9 LINE L1 6347 6967 -677 1 844 221 319 0 38 chr1 34016272 34016458 -163178974 + (CATA)n Simple_repeat Simple_repeat 1 179 0 2 844 1373 276 81 48 chr1 34016560 34017188 -163178244 + Lx9 LINE L1 6919 7567 -77 2 844 394 358 59 5 chr1 34017337 34017559 -163177873 + LTR78 LTR ERV1 285 518 -786 2 844 299 305 0 0 chr1 34018118 34018200 -163177232 + MER5A1 DNA MER1_type 3 84 -82 3 844 984 250 55 55 chr1 34018242 34018551 -163176881 - MTE2a LTR MaLR -1 378 70 3 844 572 295 12 0 chr1 34018909 34019075 -163176357 + B3A SINE B2 1 168 -30 3 844 411 73 0 0 chr1 34019079 34019134 -163176298 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 844 863 299 134 39 chr1 34019157 34019769 -163175663 + L1MB1 LINE L1 5490 6159 -30 3 844 284 217 88 26 chr1 34019997 34020093 -163175339 - MTD LTR MaLR -131 290 175 3 844 442 274 144 5 chr1 34020517 34020704 -163174728 - MTD LTR MaLR -195 224 12 3 844 255 61 0 0 chr1 34021224 34021257 -163174175 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 844 311 292 166 6 chr1 34022085 34022269 -163173163 - MIRb SINE MIR 0 262 53 3 844 700 252 32 0 chr1 34022434 34022589 -163172843 + RSINE1 SINE B4 5 164 -1 3 844 322 235 23 6 chr1 34022622 34022793 -163172639 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 844 394 253 11 0 chr1 34022822 34022996 -163172436 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 844 291 28 0 0 chr1 34023138 34023174 -163172258 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 844 770 271 53 94 chr1 34024831 34025205 -163170227 - MTE2a LTR MaLR -17 362 4 4 844 1403 217 83 17 chr1 34026248 34026599 -163168833 + ORR1D1 LTR MaLR 1 374 0 4 844 32 0 0 23 chr1 34027737 34027763 -163167669 + AT_rich Low_complexity Low_complexity 1 26 0 4 844 1433 54 5 26 chr1 34027763 34027953 -163167479 - B2_Mm2 SINE B2 -8 187 2 4 844 32 0 0 23 chr1 34027953 34027969 -163167463 + AT_rich Low_complexity Low_complexity 1 16 0 4 844 238 246 0 55 chr1 34028042 34028115 -163167317 + ID4_ SINE ID 4 72 -11 4 844 321 356 72 15 chr1 34028561 34028892 -163166540 - ORR1E LTR MaLR -2 357 8 4 844 674 148 0 105 chr1 34029295 34029438 -163165994 + B1_Mur4 SINE Alu 1 128 -22 4 844 420 20 0 0 chr1 34029634 34029683 -163165749 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 844 5805 52 36 17 chr1 34030394 34031178 -163164254 - MusHAL1 LINE L1 -142 2570 1772 5 844 186 322 16 63 chr1 34031250 34031376 -163164056 - L2 LINE L2 -1067 2352 2233 5 844 333 267 10 0 chr1 34031476 34031577 -163163855 + MER57C2 LTR ERV1 113 214 -220 5 844 435 236 106 0 chr1 34031745 34031868 -163163564 + B1_Mur2 SINE Alu 1 136 -13 5 844 247 143 20 20 chr1 34031868 34031918 -163163514 + B1F1 SINE Alu 89 138 -11 5 844 752 204 148 0 chr1 34032219 34032395 -163163037 - B3 SINE B2 0 216 15 5 844 207 0 0 0 chr1 34032940 34032963 -163162469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 844 25 0 0 0 chr1 34033437 34033462 -163161970 + AT_rich Low_complexity Low_complexity 1 25 0 5 844 911 42 0 0 chr1 34033462 34033582 -163161850 - B1_Mus1 SINE Alu 0 148 29 5 844 342 0 0 0 chr1 34034285 34034323 -163161109 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 5 844 1354 282 63 39 chr1 34034664 34035125 -163160307 - Lx8 LINE L1 -706 6767 6296 6 844 491 224 287 18 chr1 34035138 34035302 -163160130 + B3 SINE B2 1 208 -8 6 844 783 273 24 24 chr1 34035314 34035610 -163159822 + L1_Mur3 LINE L1 4398 4693 -1187 6 844 284 280 65 0 chr1 34036073 34036158 -163159274 + B1_Mur3 SINE Alu 9 99 -50 6 844 921 151 209 54 chr1 34036158 34036417 -163159015 - RLTR11B LTR ERVK 0 453 155 6 844 267 31 0 0 chr1 34036640 34036672 -163158760 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 844 706 125 100 0 chr1 34036705 34036825 -163158607 - B1_Mur4 SINE Alu -16 134 3 6 844 320 178 14 0 chr1 34037822 34037895 -163157537 + CT-rich Low_complexity Low_complexity 3 76 0 6 844 260 210 32 129 chr1 34037928 34038021 -163157411 - PB1D9 SINE Alu 0 120 37 6 844 390 57 0 0 chr1 34038140 34038193 -163157239 + (TCCCC)n Simple_repeat Simple_repeat 3 55 0 6 844 563 83 36 0 chr1 34038263 34038347 -163157085 - U6 snRNA snRNA -20 87 1 7 844 229 393 36 0 chr1 34040026 34040138 -163155294 - LTR78 LTR ERV1 -897 407 292 7 844 400 171 18 26 chr1 34040410 34040524 -163154908 + CT-rich Low_complexity Low_complexity 2 114 0 7 844 6155 225 72 99 chr1 34040541 34041265 -163154167 - Lx6 LINE L1 -5 7455 6756 7 844 198 0 0 0 chr1 34041265 34041287 -163154145 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 844 6155 225 72 99 chr1 34041287 34041366 -163154066 - Lx6 LINE L1 -705 6755 6719 7 844 186 43 0 0 chr1 34041366 34041389 -163154043 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 844 9997 193 54 67 chr1 34041389 34042796 -163152636 - Lx6 LINE L1 -742 6718 5292 7 844 2658 152 65 50 chr1 34042796 34043316 -163152116 - RLTR12B LTR ERVK 0 528 1 7 844 9997 148 27 20 chr1 34043316 34044524 -163150908 - Lx6 LINE L1 -589 5291 4081 7 844 220 179 0 0 chr1 34044620 34044659 -163150773 + (CCA)n Simple_repeat Simple_repeat 3 41 0 7 844 1784 150 4 18 chr1 34044659 34044990 -163150442 + L1_Mur3 LINE L1 2066 2407 -3736 7 844 182 143 59 39 chr1 34045084 34045135 -163150297 - L2b LINE L2 -217 3158 3107 7 844 974 221 49 0 chr1 34045180 34045384 -163150048 - B3 SINE B2 0 216 3 8 844 310 235 104 38 chr1 34045563 34045669 -163149763 + RSINE1 SINE B4 41 153 -12 8 844 279 79 0 0 chr1 34045673 34045711 -163149721 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 844 233 70 0 44 chr1 34045741 34045786 -163149646 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 8 844 261 221 0 0 chr1 34045793 34045897 -163149535 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 844 331 240 0 27 chr1 34045981 34046165 -163149267 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 844 234 0 0 0 chr1 34046224 34046250 -163149182 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 844 1085 74 7 0 chr1 34046250 34046385 -163149047 - B1_Mus2 SINE Alu -10 137 2 8 844 207 69 0 0 chr1 34048383 34048412 -163147020 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 8 844 717 169 42 49 chr1 34048413 34048556 -163146876 - B1_Mur4 SINE Alu -8 142 1 8 844 184 328 153 5 chr1 34049923 34050113 -163145319 - L2a LINE L2 -28 3398 3181 9 844 247 268 61 61 chr1 34050207 34050354 -163145078 - L2a LINE L2 -536 2883 2737 9 844 219 36 0 0 chr1 34051708 34051736 -163143696 + (T)n Simple_repeat Simple_repeat 1 28 0 9 844 769 86 86 0 chr1 34051744 34051860 -163143572 + B1_Mus1 SINE Alu 22 147 -1 9 844 725 271 127 9 chr1 34052498 34052855 -163142577 - MLT2C2 LTR ERVL -54 410 19 9 844 362 215 78 59 chr1 34053008 34053161 -163142271 - Lx7 LINE L1 -1 7695 7540 9 844 862 202 195 12 chr1 34053179 34053425 -163142007 - Lx7 LINE L1 -361 7335 7045 9 844 312 188 0 0 chr1 34054491 34054555 -163140877 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 844 1386 86 11 0 chr1 34054675 34054861 -163140571 + B2_Mm1t SINE B2 1 188 -5 9 844 1071 103 20 0 chr1 34056680 34056826 -163138606 + B1_Mur4 SINE Alu 2 150 0 9 844 285 75 0 0 chr1 34056878 34056918 -163138514 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 9 844 392 244 106 0 chr1 34057313 34057436 -163137996 - Tigger2b DNA MER2_type -589 137 2 9 844 2180 86 9 28 chr1 34057593 34057918 -163137514 - ORR1A2 LTR MaLR -8 319 1 1 844 233 256 103 11 chr1 34058252 34058339 -163137093 + L1M2 LINE L1 5684 5778 -513 1 844 288 313 53 8 chr1 34058415 34058547 -163136885 + B1F1 SINE Alu 5 142 -7 1 844 288 0 0 0 chr1 34058968 34059000 -163136432 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 844 264 149 0 0 chr1 34059000 34059047 -163136385 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 844 22 35 0 0 chr1 34059179 34059208 -163136224 + AT_rich Low_complexity Low_complexity 1 29 0 1 844 1704 31 0 0 chr1 34059534 34059726 -163135706 - B2_Mm1t SINE B2 0 193 2 1 844 201 94 0 0 chr1 34063578 34063610 -163131822 + (T)n Simple_repeat Simple_repeat 1 32 0 1 844 249 33 0 0 chr1 34064259 34064289 -163131143 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 844 214 245 19 0 chr1 34064413 34064466 -163130966 + G-rich Low_complexity Low_complexity 3 56 0 1 844 530 174 0 11 chr1 34064716 34064809 -163130623 - B1_Mur1 SINE Alu 0 149 58 1 844 191 61 30 0 chr1 34065538 34065571 -163129861 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 844 268 191 176 0 chr1 34066077 34066145 -163129287 + BC1_Mm scRNA scRNA 14 93 -59 1 844 302 241 103 8 chr1 34066507 34066624 -163128808 - ID_B1 SINE B4 -11 213 86 1 844 24 0 0 0 chr1 34069639 34069663 -163125769 + AT_rich Low_complexity Low_complexity 1 24 0 1 844 210 260 156 0 chr1 34071882 34071959 -163123473 - B4A SINE B4 -203 89 1 1 844 1176 75 0 0 chr1 34073264 34073411 -163122021 + B1_Mus1 SINE Alu 2 148 0 1 844 453 275 126 44 chr1 34074263 34074490 -163120942 - B4 SINE B4 0 292 42 1 844 1514 230 57 12 chr1 34074490 34074891 -163120541 + MTD LTR MaLR 1 419 0 1 844 453 275 126 44 chr1 34074891 34074933 -163120499 - B4 SINE B4 -251 41 1 1 844 231 0 24 49 chr1 34075160 34075201 -163120231 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 844 704 282 62 73 chr1 34076514 34076624 -163118808 - L1MC2 LINE L1 -397 5947 5851 1 844 578 208 122 8 chr1 34076624 34076755 -163118677 - B1F SINE Alu -1 148 3 1 844 704 275 55 66 chr1 34076755 34077128 -163118304 - L1MC2 LINE L1 -494 5850 5436 1 844 22 0 0 0 chr1 34077791 34077813 -163117619 + AT_rich Low_complexity Low_complexity 1 22 0 1 844 198 0 0 0 chr1 34077814 34077836 -163117596 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1 844 318 50 0 0 chr1 34077865 34077905 -163117527 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 844 963 88 47 13 chr1 34077905 34078054 -163117378 - B2_Mm2 SINE B2 -41 154 1 1 844 262 257 14 14 chr1 34078087 34078158 -163117274 + (TATG)n Simple_repeat Simple_repeat 4 74 0 1 844 291 276 217 65 chr1 34078171 34078388 -163117044 - B4A SINE B4 -18 274 25 1 845 183 271 0 20 chr1 34078886 34078935 -163116497 - L2 LINE L2 -3288 131 84 1 845 614 281 13 19 chr1 34079236 34079392 -163116040 - RSINE1 SINE B4 -8 157 3 1 845 565 177 0 66 chr1 34079559 34079680 -163115752 + PB1D10 SINE Alu 5 117 0 1 845 966 220 4 71 chr1 34081633 34081858 -163113574 - B3 SINE B2 -6 210 1 1 845 597 212 63 42 chr1 34081886 34082029 -163113403 - B3 SINE B2 -4 212 67 1 845 654 209 14 35 chr1 34082153 34082297 -163113135 + B1_Mur4 SINE Alu 8 148 -2 1 845 260 120 20 0 chr1 34082297 34082347 -163113085 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 1 845 2972 264 111 43 chr1 34082622 34083683 -163111749 - Lx8 LINE L1 -16 7457 6326 1 845 252 0 0 0 chr1 34083683 34083711 -163111721 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 845 2972 264 111 43 chr1 34083711 34083888 -163111544 - Lx8 LINE L1 -1148 6325 6135 1 845 738 175 28 14 chr1 34083926 34084071 -163111361 - B1_Mur3 SINE Alu 0 149 3 1 845 792 104 104 0 chr1 34084139 34084273 -163111159 - B2_Mm2 SINE B2 -47 148 1 1 845 22 56 0 0 chr1 34084525 34084561 -163110871 + AT_rich Low_complexity Low_complexity 1 36 0 1 845 451 278 64 37 chr1 34085785 34085972 -163109460 - L1MEc LINE L1 -6148 252 61 1 845 215 73 49 0 chr1 34086056 34086097 -163109335 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 845 189 74 0 0 chr1 34086097 34086124 -163109308 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 845 618 191 66 0 chr1 34086155 34086291 -163109141 - B1_Mus2 SINE Alu -1 146 2 1 845 1671 21 5 10 chr1 34086576 34086770 -163108662 - B2_Mm1a SINE B2 0 193 1 1 845 1408 93 0 0 chr1 34086865 34087070 -163108362 - MTB LTR MaLR 0 400 196 1 845 242 260 50 40 chr1 34087758 34087858 -163107574 + PB1D10 SINE Alu 14 114 -3 1 845 2507 58 72 0 chr1 34087934 34088293 -163107139 + MTB LTR MaLR 1 385 -15 1 845 185 0 40 0 chr1 34088319 34088344 -163107088 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 845 1291 110 0 95 chr1 34088652 34088883 -163106549 - URR1B DNA MER1_type 0 225 17 1 845 302 244 11 75 chr1 34088905 34088998 -163106434 - B1F SINE Alu -4 145 27 1 845 1234 27 0 0 chr1 34089315 34089461 -163105971 + B1_Mus2 SINE Alu 2 147 0 1 845 351 125 0 0 chr1 34089461 34089533 -163105899 + (A)n Simple_repeat Simple_repeat 1 72 0 1 845 418 125 14 0 chr1 34089934 34090006 -163105426 - RLTR18B LTR ERVK -439 73 1 1 845 322 286 127 21 chr1 34090427 34090616 -163104816 + Charlie19a DNA Charlie 130 338 -48 1 845 489 253 286 22 chr1 34090833 34091193 -163104239 - MLT1D LTR MaLR -1 504 50 1 845 180 245 0 0 chr1 34092548 34092601 -163102831 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 845 317 261 89 32 chr1 34093524 34093647 -163101785 - MIRb SINE MIR -50 218 89 1 845 439 148 21 64 chr1 34094049 34094143 -163101289 + B1_Mur4 SINE Alu 48 137 -13 1 845 388 216 51 10 chr1 34094842 34094940 -163100492 - RMER5 LTR ERV1 -2 532 431 1 845 586 75 215 9 chr1 34094966 34095073 -163100359 - B1_Mm SINE Alu 0 147 19 1 845 861 276 39 48 chr1 34095074 34095431 -163100001 - RMER5 LTR ERV1 -131 403 50 1 845 1090 235 130 18 chr1 34095450 34095780 -163099652 - MTD LTR MaLR -52 367 1 1 845 785 245 143 43 chr1 34095833 34096309 -163099123 - L1MA6 LINE L1 -305 5992 5476 1 845 1083 143 31 31 chr1 34096311 34096506 -163098926 - B2_Mm2 SINE B2 0 195 1 1 845 243 0 0 0 chr1 34096525 34096552 -163098880 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 845 614 223 338 14 chr1 34096880 34097158 -163098274 - ORR1D2 LTR MaLR -2 368 1 1 845 468 51 0 0 chr1 34099054 34099113 -163096319 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 845 185 194 147 15 chr1 34100125 34100193 -163095239 + MIRb SINE MIR 135 211 -57 1 845 342 0 0 0 chr1 34101345 34101383 -163094049 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 845 397 192 57 148 chr1 34101511 34101633 -163093799 + PB1D9 SINE Alu 1 111 -9 1 845 595 149 9 0 chr1 34102346 34102453 -163092979 - B1_Mus1 SINE Alu -2 146 39 1 845 311 252 125 37 chr1 34102539 34102675 -163092757 - B1F1 SINE Alu -1 148 1 1 845 471 230 50 0 chr1 34102967 34103106 -163092326 + B1F SINE Alu 3 148 -1 1 845 374 312 14 14 chr1 34105694 34105840 -163089592 - RSINE1 SINE B4 -19 146 1 1 845 300 208 52 0 chr1 34106325 34106402 -163089030 - HAL1 LINE L1 -4 2503 2423 1 845 648 0 0 0 chr1 34106491 34106563 -163088869 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1 845 540 0 0 0 chr1 34106564 34106624 -163088808 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1 845 330 227 50 20 chr1 34106630 34106729 -163088703 + B2_Mm2 SINE B2 93 194 -1 1 845 241 371 92 7 chr1 34106798 34106950 -163088482 - MER5B DNA MER1_type -6 172 8 1 845 627 108 0 0 chr1 34107246 34107339 -163088093 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 1 845 1350 50 42 47 chr1 34107340 34107530 -163087902 - B2_Mm2 SINE B2 -6 189 1 1 845 829 226 185 47 chr1 34108834 34109196 -163086236 + MTD LTR MaLR 8 419 0 1 845 235 284 27 89 chr1 34109729 34109841 -163085591 - L1MC4 LINE L1 -530 7512 7408 1 845 21 0 0 0 chr1 34109845 34109866 -163085566 + AT_rich Low_complexity Low_complexity 1 21 0 1 845 500 332 36 0 chr1 34110113 34110336 -163085096 - L1MC4 LINE L1 -986 7056 6826 1 845 319 333 31 16 chr1 34110843 34110971 -163084461 - MLT1F1 LTR MaLR -2 567 438 1 845 286 253 337 26 chr1 34111680 34111830 -163083602 - B3A SINE B2 -1 197 1 1 845 564 139 83 0 chr1 34112536 34112644 -163082788 + B1_Mus2 SINE Alu 31 147 0 1 845 592 292 67 91 chr1 34112836 34113209 -163082223 - MTD LTR MaLR -15 404 11 1 845 434 226 119 51 chr1 34113291 34113468 -163081964 + B3A SINE B2 9 197 -1 1 845 306 314 0 0 chr1 34114368 34114454 -163080978 + PB1D7 SINE Alu 24 109 -11 1 845 1033 53 245 0 chr1 34114508 34114659 -163080773 + B2_Mm2 SINE B2 2 189 -6 1 845 825 184 0 0 chr1 34115527 34115663 -163079769 - B1_Mus1 SINE Alu -12 136 1 1 845 1813 158 65 72 chr1 34116377 34116793 -163078639 - MTC LTR MaLR -8 413 1 1 845 1324 25 0 0 chr1 34116870 34117028 -163078404 - L1Md_A LINE L1 0 6582 6425 1 845 256 235 14 14 chr1 34117129 34117198 -163078234 + T-rich Low_complexity Low_complexity 1 69 0 1 845 639 0 0 0 chr1 34118263 34118334 -163077098 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 845 315 0 0 0 chr1 34119181 34119216 -163076216 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 1 845 210 71 0 0 chr1 34119218 34119246 -163076186 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 1 845 1668 242 87 32 chr1 34119810 34120464 -163074968 - RLTR40 LTR ERVK -106 711 22 1 845 580 261 211 41 chr1 34120542 34120867 -163074565 - MLT1F LTR MaLR -63 497 98 1 845 455 180 0 65 chr1 34120995 34121102 -163074330 - PB1D10 SINE Alu -8 109 10 1 845 221 302 154 8 chr1 34121102 34121125 -163074307 - B4A SINE B4 -73 219 71 2 845 1444 67 10 15 chr1 34121431 34121627 -163073805 - B2_Mm2 SINE B2 0 195 1 2 845 24 0 0 0 chr1 34122281 34122305 -163073127 + AT_rich Low_complexity Low_complexity 1 24 0 2 845 231 36 0 0 chr1 34122580 34122608 -163072824 + (T)n Simple_repeat Simple_repeat 1 28 0 2 845 25 31 0 0 chr1 34123236 34123268 -163072164 + AT_rich Low_complexity Low_complexity 1 32 0 2 845 1201 54 0 0 chr1 34123476 34123623 -163071809 + B1_Mm SINE Alu 1 147 0 2 845 195 42 0 0 chr1 34123625 34123649 -163071783 + (A)n Simple_repeat Simple_repeat 1 24 0 2 845 357 262 107 0 chr1 34123794 34123897 -163071535 + PB1D10 SINE Alu 1 114 -3 2 845 3390 175 39 5 chr1 34124663 34125279 -163070153 - Lx2B LINE L1 -27 6973 6337 2 845 355 247 33 25 chr1 34125292 34125433 -163069999 - ORR1E LTR MaLR -227 143 1 2 845 357 351 53 29 chr1 34127060 34127230 -163068202 + ORR1E LTR MaLR 4 177 -182 2 845 377 141 0 14 chr1 34128840 34128912 -163066520 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 845 257 333 0 0 chr1 34129874 34129955 -163065477 + MIRm SINE MIR 66 146 -130 2 845 279 0 0 0 chr1 34130072 34130103 -163065329 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 845 1370 86 8 68 chr1 34132257 34132508 -163062924 - Lx LINE L1 -6 6648 6413 2 845 247 108 51 51 chr1 34132639 34132717 -163062715 + (TAAA)n Simple_repeat Simple_repeat 2 79 0 2 845 249 283 86 34 chr1 34132836 34132953 -163062479 - L1M5 LINE L1 -475 5649 5527 2 845 404 82 0 16 chr1 34133373 34133435 -163061997 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 2 845 192 149 0 0 chr1 34134252 34134299 -163061133 + (C)n Simple_repeat Simple_repeat 1 47 0 2 845 4505 12 2 0 chr1 34135202 34135694 -163059738 + MT2_Mm LTR ERVL 1 493 0 2 845 41390 16 14 0 chr1 34135694 34140981 -163054451 + MERVL-int LTR ERVL 1 5360 -125 2 845 362 167 46 35 chr1 34140981 34141068 -163054364 + ORR1A3-int LTR MaLR 553 640 -1323 2 845 321 0 0 0 chr1 34141068 34141106 -163054326 + MERVL-int LTR ERVL 5448 5485 0 2 845 4488 10 2 2 chr1 34141106 34141599 -163053833 + MT2_Mm LTR ERVL 1 493 0 2 845 3350 217 39 90 chr1 34141635 34142829 -163052603 - L1_Mur3 LINE L1 -754 5126 3994 2 845 192 77 0 0 chr1 34143153 34143179 -163052253 + (CTCG)n Simple_repeat Simple_repeat 2 27 0 2 845 315 0 0 0 chr1 34143466 34143501 -163051931 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 845 628 228 27 20 chr1 34143964 34144112 -163051320 + B1_Mur1 SINE Alu 1 149 0 2 845 884 98 8 0 chr1 34144220 34144353 -163051079 + (GA)n Simple_repeat Simple_repeat 2 135 0 2 845 1454 203 101 3 chr1 34144618 34144944 -163050488 - ORR1D1 LTR MaLR 0 374 17 2 845 1212 48 0 13 chr1 34145340 34145489 -163049943 - B1_Mus2 SINE Alu 0 147 1 2 845 394 225 12 12 chr1 34145903 34145984 -163049448 + ID4_ SINE ID 3 83 0 2 845 2042 148 21 133 chr1 34146857 34147286 -163048146 - ORR1C2 LTR MaLR -3 381 1 2 845 1574 48 21 0 chr1 34147305 34147494 -163047938 - B2_Mm1a SINE B2 0 193 1 2 845 949 176 37 0 chr1 34148367 34148554 -163046878 - URR1A DNA MER1_type 0 226 33 2 845 216 343 26 99 chr1 34149032 34149088 -163046344 - MER5A DNA MER1_type -7 182 127 2 845 1362 91 11 5 chr1 34149088 34149275 -163046157 + B2_Mm2 SINE B2 1 188 -7 2 845 216 343 26 99 chr1 34149275 34149409 -163046023 - MER5A DNA MER1_type -63 126 6 2 845 709 278 19 19 chr1 34150611 34150827 -163044605 - B3 SINE B2 0 216 1 2 845 184 200 21 62 chr1 34151776 34151824 -163043608 - MIRm SINE MIR -123 153 108 2 845 1278 83 0 99 chr1 34152426 34152639 -163042793 - B2_Mm2 SINE B2 -1 194 3 2 845 189 0 0 0 chr1 34152678 34152699 -163042733 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 845 261 139 0 0 chr1 34152708 34152751 -163042681 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 845 850 54 0 0 chr1 34153061 34153172 -163042260 - B2_Mm2 SINE B2 -83 112 2 2 845 1333 90 11 5 chr1 34153240 34153429 -163042003 + B2_Mm1t SINE B2 1 190 -3 2 845 22 0 0 0 chr1 34153717 34153739 -163041693 + AT_rich Low_complexity Low_complexity 1 22 0 2 845 396 252 15 75 chr1 34153764 34153897 -163041535 + RMER20B LTR ERVK 1 125 -502 2 845 429 20 0 0 chr1 34154262 34154312 -163041120 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 845 551 291 30 12 chr1 34154314 34154481 -163040951 - B3A SINE B2 -28 170 1 2 845 295 194 27 40 chr1 34154576 34154651 -163040781 - B3 SINE B2 -6 210 137 2 845 485 284 123 25 chr1 34154704 34155022 -163040410 + MT2A LTR ERVL 185 533 0 2 845 253 338 81 31 chr1 34155428 34155479 -163039953 + MIR SINE MIR 4 52 -210 2 845 1021 158 168 0 chr1 34155479 34155669 -163039763 + URR1A DNA MER1_type 1 222 -4 2 845 253 338 81 31 chr1 34155669 34155840 -163039592 + MIR SINE MIR 53 237 -25 2 845 225 0 0 0 chr1 34155845 34155870 -163039562 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 845 1436 77 5 0 chr1 34156118 34156313 -163039119 + L1_Mus1 LINE L1 6372 6567 0 2 845 276 30 0 0 chr1 34156549 34156582 -163038850 + (T)n Simple_repeat Simple_repeat 1 33 0 2 845 180 0 0 0 chr1 34157745 34157765 -163037667 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 845 590 40 0 0 chr1 34157783 34157858 -163037574 - B2_Mm2 SINE B2 -120 75 1 2 845 524 237 82 0 chr1 34157865 34158000 -163037432 - L1MA5 LINE L1 -3 6297 6152 2 845 567 274 64 21 chr1 34159061 34159179 -163036253 - L1_Rod LINE L1 -165 5682 5566 2 845 2089 173 114 101 chr1 34159179 34159756 -163035676 - RMER4B LTR ERVK 0 585 1 2 845 567 274 64 21 chr1 34159756 34159872 -163035560 - L1_Rod LINE L1 -282 5565 5440 2 845 1342 160 35 140 chr1 34161092 34161550 -163033882 - RMER17C LTR ERVK 0 410 1 2 845 234 325 12 0 chr1 34161828 34161908 -163033524 - PB1D10 SINE Alu -25 92 12 2 845 28 0 0 0 chr1 34162663 34162691 -163032741 + AT_rich Low_complexity Low_complexity 1 28 0 2 845 378 0 0 0 chr1 34162810 34162852 -163032580 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 2 845 39 0 0 0 chr1 34163385 34163424 -163032008 + AT_rich Low_complexity Low_complexity 1 39 0 2 845 4222 61 40 9 chr1 34164312 34164855 -163030577 + LTRIS2 LTR ERV1 5 564 0 2 845 459 0 0 0 chr1 34164867 34164918 -163030514 + (CTG)n Simple_repeat Simple_repeat 2 52 0 2 845 915 178 0 0 chr1 34164916 34165090 -163030342 + CT-rich Low_complexity Low_complexity 2 175 0 2 845 866 66 8 0 chr1 34165092 34165213 -163030219 - B1_Mus2 SINE Alu 0 147 26 2 845 242 304 117 15 chr1 34165603 34165740 -163029692 + MTEa LTR MaLR 3 153 -226 2 845 834 155 7 34 chr1 34166346 34166493 -163028939 + B1_Mur2 SINE Alu 5 147 -2 2 845 258 32 0 0 chr1 34166504 34166535 -163028897 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 845 246 242 0 0 chr1 34166731 34166797 -163028635 + GA-rich Low_complexity Low_complexity 3 68 0 2 845 283 286 11 67 chr1 34167051 34167141 -163028291 - RSINE1 SINE B4 -1 164 80 2 845 183 42 0 0 chr1 34168380 34168404 -163027028 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 845 456 86 0 0 chr1 34168404 34168474 -163026958 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 845 284 161 16 0 chr1 34169177 34169239 -163026193 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 845 1249 27 0 7 chr1 34169436 34169583 -163025849 + B1_Mm SINE Alu 2 147 0 2 845 1154 131 40 10 chr1 34169706 34169907 -163025525 - URR1A DNA MER1_type 0 226 20 2 845 200 75 49 24 chr1 34171340 34171381 -163024051 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 2 845 207 0 0 0 chr1 34175608 34175631 -163019801 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 845 444 312 55 0 chr1 34175638 34175766 -163019666 + RSINE1 SINE B4 3 137 -28 2 845 212 111 22 0 chr1 34175940 34175985 -163019447 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 2 845 330 87 0 0 chr1 34179625 34179671 -163015761 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 2 845 201 351 75 17 chr1 34181556 34181730 -163013702 - MIRc SINE MIR -15 253 70 2 845 220 356 19 19 chr1 34181800 34181903 -163013529 + 7SLRNA srpRNA srpRNA 45 147 -167 2 845 188 286 12 0 chr1 34184234 34184306 -163011126 - MIR SINE MIR -86 182 108 2 845 1220 232 112 3 chr1 34184558 34184925 -163010507 - MTD LTR MaLR -10 409 3 2 845 446 179 0 45 chr1 34185625 34185713 -163009719 - PB1 SINE Alu -8 119 36 2 845 1520 53 11 0 chr1 34186110 34186299 -163009133 + B2_Mm1t SINE B2 1 191 -2 2 845 501 220 33 33 chr1 34187385 34187507 -163007925 + B1_Mur1 SINE Alu 1 122 -27 2 845 576 165 26 20 chr1 34188249 34188385 -163007047 - RLTR18B LTR ERVK -475 141 7 2 845 387 56 0 0 chr1 34188746 34188800 -163006632 + (TGAG)n Simple_repeat Simple_repeat 1 54 0 2 845 432 0 0 0 chr1 34190637 34190685 -163004747 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 845 252 0 0 0 chr1 34190685 34190712 -163004720 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 845 459 0 0 0 chr1 34192273 34192324 -163003108 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 845 204 67 0 0 chr1 34192324 34192354 -163003078 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 845 294 95 0 0 chr1 34192395 34192437 -163002995 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 845 297 0 0 0 chr1 34192438 34192471 -163002961 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 845 239 291 38 0 chr1 34192805 34192884 -163002548 - MIR SINE MIR -162 100 19 2 845 449 267 0 9 chr1 34193381 34193487 -163001945 + PB1D10 SINE Alu 10 114 -3 2 845 207 114 0 0 chr1 34193487 34193522 -163001910 + (TGGG)n Simple_repeat Simple_repeat 4 38 0 2 845 288 239 257 23 chr1 34193571 34193742 -163001690 - B3 SINE B2 -4 212 2 2 845 22 0 0 0 chr1 34193979 34194001 -163001431 + AT_rich Low_complexity Low_complexity 1 22 0 3 845 790 103 159 0 chr1 34195180 34195306 -163000126 + B1_Mm SINE Alu 1 146 -1 3 845 664 268 58 14 chr1 34198298 34198506 -162996926 + B4A SINE B4 3 219 -73 3 845 441 0 0 0 chr1 34198539 34198588 -162996844 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 845 5588 73 22 1 chr1 34198904 34199642 -162995790 + L1_Mus4 LINE L1 5884 6636 0 3 845 377 145 0 57 chr1 34200806 34200981 -162994451 + (TGG)n Simple_repeat Simple_repeat 3 167 0 3 845 188 147 0 51 chr1 34200995 34201074 -162994358 + (TGG)n Simple_repeat Simple_repeat 3 77 0 3 845 458 140 0 53 chr1 34201092 34201281 -162994151 + (TGG)n Simple_repeat Simple_repeat 1 179 0 3 845 267 171 0 62 chr1 34201331 34201493 -162993939 + (CTG)n Simple_repeat Simple_repeat 1 152 0 3 845 676 308 43 65 chr1 34202898 34203249 -162992183 - MTE2a LTR MaLR -34 345 3 3 845 1233 264 147 38 chr1 34203253 34203805 -162991627 - MTE2a-int LTR MaLR -1 1579 968 3 845 217 0 29 29 chr1 34204166 34204200 -162991232 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 845 1194 62 0 0 chr1 34204210 34204370 -162991062 + B2_Mm2 SINE B2 3 162 -33 3 845 252 0 0 0 chr1 34204370 34204398 -162991034 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 845 590 249 205 40 chr1 34205007 34205387 -162990045 - RMER15 LTR ERVL -129 446 4 3 845 24 0 0 0 chr1 34205570 34205594 -162989838 + AT_rich Low_complexity Low_complexity 1 24 0 3 845 1018 236 94 73 chr1 34205768 34206152 -162989280 - MTD LTR MaLR -15 404 13 3 845 25 51 0 0 chr1 34206184 34206223 -162989209 + AT_rich Low_complexity Low_complexity 1 39 0 3 845 531 203 146 0 chr1 34206258 34206381 -162989051 - B1_Mur1 SINE Alu -7 142 2 3 845 1268 34 0 0 chr1 34206519 34206666 -162988766 + B1_Mm SINE Alu 1 147 0 3 845 469 287 111 65 chr1 34207034 34207313 -162988119 - B4A SINE B4 0 292 1 3 845 862 64 72 0 chr1 34207930 34208055 -162987377 - B1_Mus2 SINE Alu 0 147 14 3 845 333 0 0 0 chr1 34208134 34208171 -162987261 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 845 25 0 0 0 chr1 34208344 34208369 -162987063 + GC_rich Low_complexity Low_complexity 1 25 0 3 845 927 156 12 0 chr1 34208753 34208913 -162986519 + URR1A DNA MER1_type 65 226 0 3 846 239 256 171 0 chr1 34211058 34211140 -162984292 - MER117 DNA MER1_type -73 124 29 3 846 54 0 0 0 chr1 34211636 34211690 -162983742 + AT_rich Low_complexity Low_complexity 1 54 0 3 846 306 0 0 0 chr1 34213331 34213365 -162982067 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 846 438 196 26 26 chr1 34213889 34214004 -162981428 - B4 SINE B4 0 292 178 3 846 519 283 43 0 chr1 34214349 34214487 -162980945 + ID_B1 SINE B4 1 144 -80 3 846 243 272 31 42 chr1 34215544 34215640 -162979792 + PB1D10 SINE Alu 23 117 0 3 846 319 265 122 22 chr1 34215860 34215999 -162979433 - MLT1A1 LTR MaLR -255 153 1 3 846 244 333 30 30 chr1 34216016 34216149 -162979283 + MIR SINE MIR 13 145 -117 3 846 4189 123 25 9 chr1 34218151 34218798 -162976634 - Lx4A LINE L1 0 7058 6402 3 846 195 129 0 0 chr1 34218991 34219022 -162976410 + (GGA)n Simple_repeat Simple_repeat 2 32 0 3 846 369 197 0 0 chr1 34220369 34220445 -162974987 + CT-rich Low_complexity Low_complexity 3 78 0 3 846 27 29 0 0 chr1 34221828 34221862 -162973570 + AT_rich Low_complexity Low_complexity 1 34 0 3 846 242 170 43 0 chr1 34222262 34222309 -162973123 + B4A SINE B4 139 187 -105 3 846 308 131 44 88 chr1 34222354 34222513 -162972919 + (TATAA)n Simple_repeat Simple_repeat 3 154 0 3 846 440 214 10 20 chr1 34222514 34222614 -162972818 + B4A SINE B4 192 290 -2 3 846 31 0 0 0 chr1 34224019 34224050 -162971382 + AT_rich Low_complexity Low_complexity 1 31 0 3 846 459 52 0 0 chr1 34224991 34225049 -162970383 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 846 229 203 123 15 chr1 34225051 34225116 -162970316 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 3 846 1558 42 0 5 chr1 34225465 34225654 -162969778 - B2_Mm2 SINE B2 -6 189 2 3 846 1785 168 34 15 chr1 34227532 34227859 -162967573 - ORR1D1 LTR MaLR -6 368 36 3 846 1050 231 19 19 chr1 34228357 34228573 -162966859 - B3 SINE B2 0 216 1 3 846 980 81 194 24 chr1 34230170 34230188 -162965244 - B2_Mm2 SINE B2 -1 194 159 3 846 249 33 0 0 chr1 34230188 34230218 -162965214 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3 846 980 81 194 24 chr1 34230218 34230364 -162965068 - B2_Mm2 SINE B2 -37 158 3 3 846 609 147 130 15 chr1 34230672 34230803 -162964629 + B1_Mus1 SINE Alu 1 146 -2 3 846 262 270 85 28 chr1 34231136 34231277 -162964155 - L1MB4 LINE L1 -10 6170 6022 3 846 261 0 0 0 chr1 34231856 34231885 -162963547 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 846 1077 122 6 0 chr1 34231885 34232041 -162963391 - B2_Mm2 SINE B2 -38 157 1 3 846 1036 76 7 27 chr1 34232550 34232699 -162962733 + B1_Mus1 SINE Alu 1 146 -2 3 846 22 0 0 0 chr1 34233268 34233290 -162962142 + AT_rich Low_complexity Low_complexity 1 22 0 3 846 369 152 112 61 chr1 34233295 34233393 -162962039 - PB1D7 SINE Alu 0 120 18 3 846 195 100 0 0 chr1 34237392 34237422 -162958010 + (T)n Simple_repeat Simple_repeat 1 30 0 3 846 283 308 0 12 chr1 34237641 34237751 -162957681 + ID4 SINE ID 4 109 -43 3 846 411 21 0 0 chr1 34241497 34241545 -162953887 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 846 258 203 149 45 chr1 34241657 34241724 -162953708 - ID_B1 SINE B4 -3 221 148 3 846 22 70 0 0 chr1 34244701 34244744 -162950688 + AT_rich Low_complexity Low_complexity 1 43 0 3 846 1060 38 68 0 chr1 34251126 34251259 -162944173 - B1_Mm SINE Alu -4 143 2 3 846 192 97 0 0 chr1 34251705 34251736 -162943696 + (T)n Simple_repeat Simple_repeat 1 31 0 3 846 347 0 0 23 chr1 34251989 34252033 -162943399 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 846 429 266 89 154 chr1 34252133 34252426 -162943006 + B4 SINE B4 2 275 -17 3 846 212 200 22 0 chr1 34252437 34252482 -162942950 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 846 320 352 96 27 chr1 34253253 34253472 -162941960 + MIR SINE MIR 14 247 -15 3 846 228 299 54 45 chr1 34255115 34255227 -162940205 + PB1D9 SINE Alu 2 114 -6 3 846 41 78 0 0 chr1 34255943 34256033 -162939399 + AT_rich Low_complexity Low_complexity 1 90 0 3 846 326 80 20 0 chr1 34256033 34256083 -162939349 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 3 846 470 256 168 29 chr1 34256630 34256803 -162938629 + B3A SINE B2 2 198 0 3 846 368 236 14 0 chr1 34258727 34258799 -162936633 + PB1D10 SINE Alu 36 108 -9 3 846 23 0 0 0 chr1 34259178 34259201 -162936231 + GC_rich Low_complexity Low_complexity 1 23 0 3 846 365 310 41 69 chr1 34259686 34259834 -162935598 + L2a LINE L2 3175 3374 -52 3 846 949 164 53 53 chr1 34259834 34260059 -162935373 + URR1A DNA MER1_type 2 226 0 3 846 365 296 39 72 chr1 34260059 34260113 -162935319 + L2a LINE L2 3375 3424 -2 3 846 5421 185 77 0 chr1 34260319 34261314 -162934118 - Lx5 LINE L1 -3 7047 5976 3 846 2151 126 38 41 chr1 34262500 34262865 -162932567 - ORR1B2 LTR MaLR -1 366 3 3 846 201 74 0 0 chr1 34262880 34262907 -162932525 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 3 846 1216 69 114 0 chr1 34262907 34263082 -162932350 - B2_Mm2 SINE B2 0 195 1 3 846 239 218 18 35 chr1 34263135 34263192 -162932240 + B1F2 SINE Alu 2 57 -90 3 846 216 97 0 0 chr1 34263400 34263431 -162932001 + (TTAGGG)n Simple_repeat Simple_repeat 2 32 0 3 846 394 252 68 25 chr1 34263438 34263556 -162931876 - B4 SINE B4 -169 123 1 3 846 226 289 0 0 chr1 34264288 34264340 -162931092 + Charlie5 DNA MER1_type 52 103 -2521 3 846 229 268 0 58 chr1 34264706 34264793 -162930639 + CT-rich Low_complexity Low_complexity 3 84 0 3 846 460 259 36 15 chr1 34266090 34266227 -162929205 - B1F SINE Alu -8 141 2 3 846 241 167 24 0 chr1 34266432 34266474 -162928958 - PB1D10 SINE Alu -15 102 60 3 846 369 109 0 0 chr1 34266613 34266668 -162928764 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 846 237 372 80 37 chr1 34266894 34267056 -162928376 - Helitron3Na_Mam RC Helitron -105 381 213 3 846 235 256 61 49 chr1 34270056 34270138 -162925294 + PB1D7 SINE Alu 38 120 0 3 846 913 90 60 0 chr1 34270251 34270384 -162925048 + B2_Mm2 SINE B2 47 187 -8 3 846 31 0 0 0 chr1 34272523 34272554 -162922878 + AT_rich Low_complexity Low_complexity 1 31 0 3 846 576 351 44 51 chr1 34272623 34272917 -162922515 + B4A SINE B4 1 292 0 3 846 197 298 35 35 chr1 34274117 34274204 -162921228 - MIR SINE MIR -175 87 1 3 846 257 0 60 40 chr1 34274600 34274650 -162920782 + (TTTTG)n Simple_repeat Simple_repeat 4 54 0 3 846 696 255 50 82 chr1 34277412 34277694 -162917738 + B4 SINE B4 1 273 -19 3 846 309 230 211 39 chr1 34278304 34278408 -162917024 + MER5A DNA MER1_type 41 162 -27 3 846 720 244 43 6 chr1 34278986 34279147 -162916285 + B3A SINE B2 12 178 -20 3 846 234 0 0 0 chr1 34279174 34279200 -162916232 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 846 453 262 31 105 chr1 34279368 34279530 -162915902 - RMER30 DNA MER1_type -44 158 9 3 846 250 352 14 0 chr1 34279682 34279753 -162915679 + ID4_ SINE ID 1 72 -11 3 846 216 354 78 29 chr1 34279753 34279784 -162915648 + ID_B1 SINE B4 1 107 -117 3 846 248 270 95 0 chr1 34280454 34280517 -162914915 + ID4_ SINE ID 4 72 -11 3 846 207 170 21 21 chr1 34281561 34281609 -162913823 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 846 1179 129 6 6 chr1 34282119 34282298 -162913134 + B2_Mm2 SINE B2 1 179 -16 3 846 522 307 29 15 chr1 34283596 34283801 -162911631 + Lx7 LINE L1 7106 7313 -383 3 846 463 90 26 0 chr1 34283804 34283882 -162911550 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 846 295 258 62 62 chr1 34283909 34283964 -162911468 + Lx7 LINE L1 7482 7536 -160 3 846 777 170 13 75 chr1 34283964 34284123 -162911309 - B1_Mur4 SINE Alu -1 149 1 4 846 295 258 62 62 chr1 34284123 34284261 -162911171 + Lx7 LINE L1 7537 7675 -21 3 846 537 99 0 0 chr1 34288245 34288326 -162907106 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 846 231 36 0 0 chr1 34288771 34288799 -162906633 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 846 713 194 21 21 chr1 34288799 34288932 -162906500 - B1_Mur2 SINE Alu -12 137 2 4 846 252 288 88 0 chr1 34289009 34289089 -162906343 - Charlie19a DNA Charlie -156 230 144 4 846 1314 74 6 6 chr1 34289492 34289669 -162905763 - B2_Mm2 SINE B2 -7 188 12 4 846 400 262 125 16 chr1 34290230 34290358 -162905074 + RSINE1 SINE B4 3 144 -21 4 846 330 26 0 0 chr1 34290369 34290408 -162905024 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 846 2098 74 74 0 chr1 34298034 34298319 -162897113 - ORR1A2 LTR MaLR 0 327 22 4 846 228 327 53 24 chr1 34298330 34298499 -162896933 - L1_Rod LINE L1 -6288 884 711 4 846 585 301 44 40 chr1 34299953 34300178 -162895254 - RMER15 LTR ERVL 0 575 350 4 846 305 179 0 18 chr1 34300469 34300526 -162894906 + HAL1-3A_ME LINE L1 1976 2031 -827 4 846 2222 95 9 34 chr1 34300529 34300856 -162894576 - ORR1A2 LTR MaLR -8 319 1 4 846 219 191 0 21 chr1 34300919 34300967 -162894465 + CT-rich Low_complexity Low_complexity 1 47 0 4 846 1232 89 0 6 chr1 34300967 34301148 -162894284 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 846 250 375 42 74 chr1 34301480 34301791 -162893641 - L2a LINE L2 -2 3424 3124 4 846 498 282 37 7 chr1 34302078 34302259 -162893173 + L1MA7 LINE L1 6100 6289 -2 4 846 1283 27 0 0 chr1 34302370 34302517 -162892915 + B1_Mm SINE Alu 1 147 0 4 846 256 271 43 78 chr1 34302555 34302671 -162892761 + PB1 SINE Alu 1 112 -15 4 846 448 250 74 0 chr1 34302968 34303076 -162892356 + RSINE1 SINE B4 3 118 -47 4 846 1284 75 0 0 chr1 34303826 34303987 -162891445 + B2_Mm2 SINE B2 1 161 -34 4 846 297 0 0 0 chr1 34303987 34304020 -162891412 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 846 1076 156 56 0 chr1 34304020 34304038 -162891394 + B2_Mm1t SINE B2 172 189 -4 4 846 378 0 0 0 chr1 34304160 34304202 -162891230 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 846 405 244 156 8 chr1 34304209 34304337 -162891095 - RSINE1 SINE B4 -17 148 2 4 846 270 81 0 0 chr1 34304390 34304427 -162891005 + (TATG)n Simple_repeat Simple_repeat 1 37 0 4 846 554 230 16 7 chr1 34305357 34305479 -162889953 + B1_Mur1 SINE Alu 6 122 -27 4 846 216 159 45 0 chr1 34306979 34307023 -162888409 + CT-rich Low_complexity Low_complexity 4 49 0 4 846 275 262 33 0 chr1 34311241 34311302 -162884130 + PB1D9 SINE Alu 2 64 -56 4 846 647 354 115 33 chr1 34311431 34312152 -162883280 - L1MDa LINE L1 -5823 810 31 4 846 811 132 60 0 chr1 34312182 34312333 -162883099 - Lx2 LINE L1 0 6997 6838 4 846 753 235 9 186 chr1 34315575 34315795 -162879637 - B3 SINE B2 -8 208 13 4 846 307 270 58 29 chr1 34316260 34316363 -162879069 + B3 SINE B2 2 107 -109 4 846 489 34 0 0 chr1 34317732 34317791 -162877641 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 846 351 0 0 0 chr1 34317791 34317829 -162877603 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 846 641 266 130 37 chr1 34317896 34318165 -162877267 - MTD LTR MaLR -118 301 8 4 846 225 0 0 0 chr1 34319185 34319210 -162876222 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 846 578 183 50 42 chr1 34319273 34319393 -162876039 - B1_Mur1 SINE Alu -27 122 2 4 846 245 269 16 129 chr1 34319284 34319408 -162876024 - MT2B LTR ERVL -337 264 155 4 846 22 0 0 0 chr1 34322219 34322241 -162873191 + AT_rich Low_complexity Low_complexity 1 22 0 4 846 265 309 0 0 chr1 34324005 34324073 -162871359 - RSINE1 SINE B4 -95 70 3 4 846 413 288 30 0 chr1 34324549 34324681 -162870751 + B1F SINE Alu 1 136 -13 4 846 288 0 0 0 chr1 34325391 34325423 -162870009 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 846 502 298 0 105 chr1 34327242 34327379 -162868053 + ID_B1 SINE B4 2 133 -91 4 846 701 215 7 39 chr1 34327379 34327534 -162867898 + B1_Mur4 SINE Alu 1 150 0 4 846 502 298 0 105 chr1 34327534 34327625 -162867807 + ID_B1 SINE B4 134 206 -18 4 846 348 24 0 0 chr1 34328560 34328601 -162866831 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 846 207 0 0 0 chr1 34328601 34328623 -162866809 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 846 716 241 54 20 chr1 34329157 34329360 -162866072 + B3 SINE B2 1 210 -6 4 846 1168 78 0 0 chr1 34329535 34329677 -162865755 + B1_Mus1 SINE Alu 1 142 -6 4 846 1398 62 0 68 chr1 34329701 34329908 -162865524 - B2_Mm2 SINE B2 -2 193 1 4 846 29 60 0 0 chr1 34330020 34330070 -162865362 + AT_rich Low_complexity Low_complexity 1 50 0 4 846 26 0 0 0 chr1 34330697 34330723 -162864709 + AT_rich Low_complexity Low_complexity 1 26 0 4 846 624 294 70 0 chr1 34330732 34330919 -162864513 + B3 SINE B2 1 200 -16 4 846 245 182 0 0 chr1 34331274 34331329 -162864103 + T-rich Low_complexity Low_complexity 1 55 0 4 846 554 285 8 0 chr1 34331476 34331599 -162863833 + B3 SINE B2 3 126 -90 4 846 488 111 12 0 chr1 34331617 34331698 -162863734 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 846 180 310 91 11 chr1 34331834 34331922 -162863510 + L3 LINE CR1 2178 2272 -2217 4 846 324 0 0 0 chr1 34332448 34332484 -162862948 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 846 216 270 0 63 chr1 34335218 34335297 -162860135 + PB1 SINE Alu 44 117 -10 4 846 252 0 0 0 chr1 34335483 34335511 -162859921 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 846 363 44 0 0 chr1 34336852 34336897 -162858535 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 846 294 29 0 0 chr1 34336897 34336931 -162858501 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 846 2568 74 6 0 chr1 34337163 34337488 -162857944 - ORR1A2 LTR MaLR 0 327 1 4 846 2067 84 83 18 chr1 34337822 34338148 -162857284 - L1_Mus3 LINE L1 0 6638 6292 4 846 541 344 69 44 chr1 34338336 34338816 -162856616 - Lx8 LINE L1 -2 7471 6980 4 846 824 295 153 12 chr1 34338843 34339176 -162856256 + Lx8 LINE L1 6554 6933 -540 4 846 438 217 111 17 chr1 34339567 34339684 -162855748 - B1F SINE Alu -19 130 3 4 846 282 172 123 15 chr1 34340268 34340333 -162855099 - ORR1D1 LTR MaLR -54 320 249 4 846 22 0 0 0 chr1 34340631 34340653 -162854779 + AT_rich Low_complexity Low_complexity 1 22 0 4 847 656 256 59 11 chr1 34341790 34341976 -162853456 - B3A SINE B2 -3 195 1 4 847 1234 91 0 61 chr1 34342216 34342250 -162853182 - B2_Mm2 SINE B2 -8 187 162 4 847 297 0 0 0 chr1 34342250 34342283 -162853149 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 847 1234 91 0 61 chr1 34342283 34342446 -162852986 - B2_Mm2 SINE B2 -34 161 2 4 847 547 301 26 0 chr1 34342553 34342632 -162852800 + ID SINE ID 4 86 -138 4 847 303 283 75 9 chr1 34342632 34342739 -162852693 + PB1D10 SINE Alu 3 116 -1 4 847 191 113 0 86 chr1 34343624 34343682 -162851750 + (TCTG)n Simple_repeat Simple_repeat 3 55 0 4 847 30 89 0 0 chr1 34343738 34343817 -162851615 + AT_rich Low_complexity Low_complexity 1 79 0 4 847 615 110 0 63 chr1 34344992 34345118 -162850314 - L1Md_F2 LINE L1 0 6582 6465 4 847 288 338 25 68 chr1 34345431 34345593 -162849839 - RSINE1 SINE B4 -8 157 3 4 847 463 254 191 11 chr1 34347757 34347940 -162847492 + B3 SINE B2 1 216 0 4 847 180 304 56 42 chr1 34349410 34349482 -162845950 + MIRc SINE MIR 80 152 -116 4 847 225 117 50 0 chr1 34352198 34352258 -162843174 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 847 186 103 0 0 chr1 34352653 34352682 -162842750 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 847 446 302 69 8 chr1 34352687 34352817 -162842615 - RSINE1 SINE B4 -6 159 22 4 847 21 36 0 0 chr1 34353344 34353372 -162842060 + AT_rich Low_complexity Low_complexity 1 28 0 4 847 233 204 0 0 chr1 34353444 34353498 -162841934 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 847 252 0 0 0 chr1 34353498 34353526 -162841906 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 847 22 0 0 0 chr1 34354307 34354329 -162841103 + GC_rich Low_complexity Low_complexity 1 22 0 4 847 1631 249 16 13 chr1 34354358 34354733 -162840699 - Lx6 LINE L1 -22 7438 7063 4 847 714 237 52 36 chr1 34357137 34357330 -162838102 - B3A SINE B2 -1 197 2 4 847 548 223 6 0 chr1 34357843 34358018 -162837414 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 847 23 0 0 0 chr1 34360102 34360125 -162835307 + AT_rich Low_complexity Low_complexity 1 23 0 4 847 27 0 0 0 chr1 34361580 34361607 -162833825 + AT_rich Low_complexity Low_complexity 1 27 0 4 847 521 198 11 0 chr1 34361610 34361701 -162833731 + B4A SINE B4 1 92 -200 4 847 479 292 53 8 chr1 34362151 34362282 -162833150 + ID_B1 SINE B4 82 218 -6 4 847 813 35 254 0 chr1 34362423 34362537 -162832895 + B1_Mus1 SINE Alu 1 143 -5 4 847 324 0 0 0 chr1 34363620 34363656 -162831776 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 847 197 33 33 0 chr1 34364839 34364869 -162830563 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 4 847 279 0 0 0 chr1 34365189 34365220 -162830212 + (A)n Simple_repeat Simple_repeat 1 31 0 4 847 2298 89 13 0 chr1 34365730 34366045 -162829387 - ORR1A2 LTR MaLR -8 319 1 4 847 3826 44 0 2 chr1 34366533 34366991 -162828441 + L1Md_F2 LINE L1 6125 6581 -1 5 847 922 195 67 39 chr1 34367122 34367330 -162828102 + B3 SINE B2 2 215 -1 5 847 374 304 62 0 chr1 34368482 34368594 -162826838 - RMER15 LTR ERVL -14 561 443 5 847 1655 187 99 0 chr1 34369337 34369680 -162825752 + ORR1C2 LTR MaLR 1 377 -7 5 847 3007 129 43 25 chr1 34369782 34370297 -162825135 + RLTR28 LTR ERVL 1 524 0 5 847 1980 161 113 79 chr1 34370888 34370928 -162824504 + RMER15 LTR ERVL 1 40 -535 5 847 1610 52 0 0 chr1 34370928 34371119 -162824313 + B2_Mm1a SINE B2 1 191 -2 5 847 1980 161 113 79 chr1 34371119 34371510 -162823922 + RMER15 LTR ERVL 41 447 -128 5 847 232 150 0 0 chr1 34371522 34371562 -162823870 + RMER15 LTR ERVL 408 447 -128 5 847 284 154 56 97 chr1 34371568 34371640 -162823792 + RMER15 LTR ERVL 379 447 -128 5 847 232 150 0 0 chr1 34371652 34371692 -162823740 + RMER15 LTR ERVL 408 447 -128 5 847 848 205 89 42 chr1 34371692 34371906 -162823526 + RMER15 LTR ERVL 352 575 0 5 847 641 242 0 45 chr1 34373628 34373784 -162821648 - B1_Mur1 SINE Alu 0 149 1 5 847 189 0 0 0 chr1 34373795 34373816 -162821616 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 847 1819 166 121 3 chr1 34374130 34374469 -162820963 - RLTR30 LTR ERV1 0 379 1 5 847 696 35 0 0 chr1 34375280 34375367 -162820065 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 847 259 308 59 37 chr1 34375379 34375514 -162819918 + MER53 DNA hAT 42 179 -14 5 847 566 179 72 31 chr1 34375646 34375814 -162819618 - MTC-int LTR MaLR -369 889 777 5 847 264 188 141 0 chr1 34375822 34375886 -162819546 - MTC LTR MaLR -1 420 348 5 847 624 338 36 25 chr1 34375888 34376365 -162819067 - L1_Rod LINE L1 -4163 1684 1203 5 847 1239 316 50 32 chr1 34376587 34377360 -162818072 + L1M2 LINE L1 4089 4875 -1268 5 847 929 310 31 3 chr1 34377766 34378151 -162817281 + L1M2 LINE L1 4904 5299 -844 5 847 1466 279 49 10 chr1 34378199 34378586 -162816846 - MTD LTR MaLR 0 419 18 5 847 1379 249 62 46 chr1 34378635 34379115 -162816317 + L1_Mur3 LINE L1 5374 5861 -19 5 847 252 86 0 0 chr1 34379194 34379229 -162816203 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 847 1336 38 0 0 chr1 34379229 34379389 -162816043 - B2_Mm1a SINE B2 -33 160 1 5 847 982 287 20 47 chr1 34379663 34379963 -162815469 + B4A SINE B4 1 292 0 5 847 507 128 0 0 chr1 34380077 34380163 -162815269 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 847 3692 126 113 17 chr1 34380163 34380810 -162814622 + RMER6A LTR ERVK 1 709 -47 5 847 288 204 0 0 chr1 34380823 34380872 -162814560 + RMER6A LTR ERVK 681 729 -27 5 847 328 188 8 8 chr1 34380876 34381005 -162814427 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 847 305 137 0 38 chr1 34381009 34381062 -162814370 + HAL1-3A_ME LINE L1 1975 2025 -833 5 847 351 0 0 0 chr1 34381498 34381537 -162813895 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 847 249 200 22 0 chr1 34381866 34381911 -162813521 - RMER20B LTR ERVK -463 164 119 5 847 183 129 0 0 chr1 34382001 34382032 -162813400 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 5 847 706 262 43 10 chr1 34382036 34382244 -162813188 - B3 SINE B2 -1 215 1 5 847 411 324 78 27 chr1 34382925 34383144 -162812288 - MER90a LTR ERV1 0 614 385 5 847 252 0 0 0 chr1 34384917 34384945 -162810487 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 5 847 365 251 115 17 chr1 34385173 34385290 -162810142 - Lx8 LINE L1 -2 7471 7336 5 847 495 0 0 0 chr1 34385290 34385345 -162810087 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 847 365 251 115 17 chr1 34385345 34385401 -162810031 - Lx8 LINE L1 -138 7335 7281 5 847 932 299 115 17 chr1 34386278 34386696 -162808736 + Lx9 LINE L1 7123 7581 -63 5 847 947 222 9 32 chr1 34388182 34388401 -162807031 - B3 SINE B2 0 216 3 5 847 966 216 15 5 chr1 34389165 34389370 -162806062 + B3 SINE B2 2 208 -8 5 847 342 0 0 0 chr1 34389371 34389409 -162806023 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 5 847 434 239 0 0 chr1 34389641 34389733 -162805699 + RSINE1 SINE B4 3 94 -71 5 847 347 74 0 36 chr1 34390467 34390523 -162804909 + (TTTTC)n Simple_repeat Simple_repeat 1 54 0 5 847 1815 255 97 33 chr1 34391129 34391528 -162803904 - Lx8 LINE L1 -303 7170 6744 5 847 3330 32 2 157 chr1 34391528 34392044 -162803388 - RLTR10C LTR ERVK 0 436 1 5 847 1815 260 194 24 chr1 34392044 34392357 -162803075 - Lx8 LINE L1 -730 6743 6379 5 847 252 289 78 78 chr1 34394798 34394952 -162800480 - HAL1 LINE L1 -508 1999 1846 5 847 911 139 21 7 chr1 34395794 34395939 -162799493 - B1_Mus1 SINE Alu 0 148 2 5 847 955 229 9 61 chr1 34396444 34396672 -162798760 - B3 SINE B2 0 216 1 5 847 231 292 67 11 chr1 34396797 34396887 -162798545 + BC1_Mm scRNA scRNA 2 96 -56 5 847 730 182 0 8 chr1 34397040 34397167 -162798265 + B1_Mus1 SINE Alu 11 136 -12 5 847 14046 70 36 21 chr1 34397171 34400004 -162795428 + L1VL2 LINE L1 108 2983 -632 5 847 22 56 0 0 chr1 34400169 34400205 -162795227 + AT_rich Low_complexity Low_complexity 1 36 0 5 847 4422 82 38 96 chr1 34401139 34401858 -162793574 - RLTR33 LTR ERVK -1 677 1 5 847 192 111 0 0 chr1 34402177 34402213 -162793219 + (A)n Simple_repeat Simple_repeat 1 36 0 5 847 266 188 0 20 chr1 34402220 34402269 -162793163 - Lx9 LINE L1 -1129 6515 6468 5 847 380 230 69 26 chr1 34402376 34402492 -162792940 - Lx2A1 LINE L1 -1108 5900 5775 5 847 2542 289 65 8 chr1 34402513 34403339 -162792093 + Lx8 LINE L1 6435 7307 -166 5 847 3058 17 42 3 chr1 34404301 34404654 -162790778 + IAPLTR1_Mm LTR ERVK 1 367 0 5 847 21334 26 32 11 chr1 34404654 34407156 -162788276 + IAPEz-int LTR ERVK 8 2562 -3919 5 847 6193 25 3 8 chr1 34407148 34407861 -162787571 + IAPEz-int LTR ERVK 5773 6481 0 5 847 3058 17 42 3 chr1 34407861 34408214 -162787218 + IAPLTR1_Mm LTR ERVK 1 367 0 5 847 24 67 0 0 chr1 34409362 34409407 -162786025 + AT_rich Low_complexity Low_complexity 1 45 0 5 847 238 317 0 0 chr1 34410801 34410883 -162784549 - ID4_ SINE ID 0 83 2 5 847 1212 68 0 0 chr1 34410931 34411092 -162784340 + B2_Mm2 SINE B2 1 161 -34 5 847 195 42 0 0 chr1 34411092 34411116 -162784316 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 847 189 0 0 0 chr1 34411756 34411777 -162783655 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 847 265 295 28 78 chr1 34411810 34411951 -162783481 + MLT1F1 LTR MaLR 27 162 -407 5 847 252 0 0 0 chr1 34411951 34411979 -162783453 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 847 265 295 28 78 chr1 34411979 34412017 -162783415 + MLT1F1 LTR MaLR 163 197 -372 5 847 23 0 0 0 chr1 34412336 34412359 -162783073 + AT_rich Low_complexity Low_complexity 1 23 0 5 847 2649 70 98 0 chr1 34412359 34412747 -162782685 - MusHAL1 LINE L1 -2081 631 206 5 847 1841 56 4 0 chr1 34412711 34412961 -162782471 + MusHAL1 LINE L1 2458 2708 -4 5 847 26 30 0 0 chr1 34412965 34412998 -162782434 + AT_rich Low_complexity Low_complexity 1 33 0 5 847 424 129 23 23 chr1 34413126 34413213 -162782219 + C-rich Low_complexity Low_complexity 2 88 0 5 847 258 95 0 0 chr1 34413806 34413848 -162781584 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 847 520 216 129 0 chr1 34413849 34413965 -162781467 - B1_Mus2 SINE Alu -4 143 13 5 847 265 250 32 54 chr1 34413882 34413975 -162781457 - MT2B LTR ERVL -344 257 167 5 847 414 221 135 0 chr1 34413975 34414079 -162781353 - PB1D9 SINE Alu -2 118 1 5 847 689 132 0 8 chr1 34414130 34414252 -162781180 + (TCCC)n Simple_repeat Simple_repeat 1 121 0 5 847 4501 10 0 12 chr1 34414976 34415475 -162779957 - MT2_Mm LTR ERVL 0 493 1 5 847 378 0 0 0 chr1 34415544 34415586 -162779846 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 847 9264 104 54 16 chr1 34415586 34416221 -162779211 - Lx4A LINE L1 0 7058 6385 5 847 537 58 0 0 chr1 34416221 34416290 -162779142 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 847 1537 39 0 6 chr1 34416290 34416469 -162778963 - B2_Mm1a SINE B2 -14 179 2 5 847 9264 109 44 14 chr1 34416469 34417607 -162777825 - Lx4A LINE L1 -674 6384 5210 5 847 2859 99 37 19 chr1 34417609 34418073 -162777359 + L1_Mur2 LINE L1 4546 5017 -860 5 847 1289 102 11 0 chr1 34418073 34418250 -162777182 + B2_Mm1t SINE B2 1 179 -14 5 847 294 110 353 29 chr1 34418335 34418437 -162776995 + B2_Mm2 SINE B2 47 181 -14 5 847 1213 82 77 0 chr1 34418443 34418613 -162776819 + L1_Mur2 LINE L1 5013 5195 -682 5 847 243 0 0 0 chr1 34418643 34418670 -162776762 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 847 435 119 0 0 chr1 34418670 34418737 -162776695 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 847 2300 87 51 0 chr1 34419098 34419409 -162776023 + ORR1A2 LTR MaLR 1 327 0 5 847 370 293 97 6 chr1 34419880 34420055 -162775377 + LTR37B LTR ERV1 7 197 -271 5 847 446 321 13 72 chr1 34420448 34420559 -162774873 + ID_B1 SINE B4 1 217 -3 5 847 686 175 0 0 chr1 34420559 34420679 -162774753 + B1_Mur2 SINE Alu 23 142 -7 5 847 927 69 130 0 chr1 34420714 34420845 -162774587 + B1_Mus1 SINE Alu 1 148 0 5 847 327 78 0 0 chr1 34421143 34421194 -162774238 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 847 447 35 0 0 chr1 34421196 34421253 -162774179 - B1_Mus2 SINE Alu -11 136 80 5 847 1953 242 9 40 chr1 34421399 34421622 -162773810 + L1_Mur3 LINE L1 4075 4295 -1585 5 847 1197 55 0 7 chr1 34421622 34421770 -162773662 + B1_Mm SINE Alu 1 147 0 5 847 1953 242 9 40 chr1 34421770 34422114 -162773318 + L1_Mur3 LINE L1 4296 4624 -1256 5 847 1545 158 73 73 chr1 34422194 34422548 -162772884 + ORR1B1 LTR MaLR 41 394 0 5 847 455 242 8 15 chr1 34422584 34422718 -162772714 + L1_Rod LINE L1 742 874 -6734 5 847 491 257 20 14 chr1 34422725 34422871 -162772561 + L1_Rod LINE L1 2418 2564 -3283 5 847 1005 110 52 0 chr1 34422876 34423030 -162772402 - ORR1B1 LTR MaLR 0 394 233 5 847 1774 162 82 52 chr1 34423025 34423428 -162772004 + RLTR1D LTR ERV1 175 589 -16 5 847 1020 141 131 0 chr1 34423444 34423650 -162771782 - ORR1B1 LTR MaLR -151 243 11 5 847 1865 209 30 26 chr1 34423650 34424112 -162771320 + L1_Rod LINE L1 2568 3031 -2816 5 847 194 0 0 37 chr1 34425988 34426015 -162769417 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 847 1386 62 23 0 chr1 34426033 34426210 -162769222 + B2_Mm2 SINE B2 1 181 -14 5 847 456 19 0 0 chr1 34426210 34426263 -162769169 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 847 5550 189 59 99 chr1 34426338 34426943 -162768489 + L1_Rod LINE L1 3072 3665 -2182 5 847 378 108 0 0 chr1 34426943 34427008 -162768424 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 5 847 5550 189 59 99 chr1 34427008 34427645 -162767787 + L1_Rod LINE L1 3666 4280 -1567 5 847 1799 181 49 65 chr1 34427645 34428030 -162767402 - RLTR30 LTR ERV1 0 379 1 5 847 5550 189 59 99 chr1 34428030 34428570 -162766862 + L1_Rod LINE L1 4281 4783 -1064 5 847 414 273 95 83 chr1 34428589 34428841 -162766591 - MER21B LTR ERV1 -396 467 213 6 847 257 259 0 0 chr1 34428916 34428974 -162766458 - ID2 SINE ID -13 70 13 6 847 795 162 0 0 chr1 34429001 34429143 -162766289 + T-rich Low_complexity Low_complexity 2 143 0 6 847 234 0 0 0 chr1 34429257 34429283 -162766149 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 6 847 1132 85 0 0 chr1 34429285 34429426 -162766006 - B1_Mus2 SINE Alu -6 141 1 6 847 219 286 0 0 chr1 34429455 34429504 -162765928 - B1F SINE Alu -51 98 50 6 847 1588 136 6 44 chr1 34429513 34429829 -162765603 - RMER10B LTR ERVL 0 398 95 6 847 465 133 0 0 chr1 34429838 34429913 -162765519 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 847 1791 167 25 0 chr1 34430664 34430987 -162764445 + MTC LTR MaLR 91 421 0 6 847 24 0 0 0 chr1 34431394 34431418 -162764014 + AT_rich Low_complexity Low_complexity 1 24 0 6 847 6755 52 60 9 chr1 34431458 34432335 -162763097 + Lx3_Mus LINE L1 6088 7009 0 6 847 1345 161 0 0 chr1 34433566 34433783 -162761649 - URR1B DNA MER1_type 0 225 9 6 847 1390 200 50 63 chr1 34433838 34434003 -162761429 + ORR1D1 LTR MaLR 1 166 -208 6 847 1395 0 0 0 chr1 34434003 34434158 -162761274 + (TC)n Simple_repeat Simple_repeat 2 156 0 6 847 1390 200 50 63 chr1 34434158 34434371 -162761061 + ORR1D1 LTR MaLR 167 373 -1 6 847 765 279 97 15 chr1 34434451 34434720 -162760712 + MTEb LTR MaLR 1 291 -88 6 847 942 218 66 0 chr1 34435405 34435602 -162759830 + B3 SINE B2 1 210 -6 6 847 3521 115 52 9 chr1 34435631 34436208 -162759224 - Lx2A1 LINE L1 0 7008 6407 6 847 867 154 8 0 chr1 34436648 34436778 -162758654 - B1_Mur3 SINE Alu -16 133 3 6 847 650 308 142 34 chr1 34437518 34437719 -162757713 + MER82 DNA MER2_type 37 276 -377 6 847 998 58 15 0 chr1 34437719 34437856 -162757576 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 6 847 650 308 142 34 chr1 34437856 34438007 -162757425 + MER82 DNA MER2_type 277 427 -226 6 847 259 260 36 71 chr1 34438240 34438352 -162757080 - B1F SINE Alu 0 149 42 6 847 27 0 0 0 chr1 34438468 34438495 -162756937 + AT_rich Low_complexity Low_complexity 1 27 0 6 847 278 289 0 0 chr1 34438502 34438578 -162756854 + ID2 SINE ID 2 77 -6 6 847 1025 116 7 7 chr1 34438983 34439130 -162756302 - B1_Mus2 SINE Alu 0 147 1 6 847 266 289 176 44 chr1 34439440 34439486 -162755946 + B4A SINE B4 55 199 -93 6 847 476 211 29 0 chr1 34439486 34439590 -162755842 + PB1D10 SINE Alu 10 116 -1 6 847 3373 53 0 0 chr1 34439638 34440034 -162755398 + MTA_Mm LTR MaLR 1 396 0 6 847 437 238 8 0 chr1 34440269 34440391 -162755041 + CT-rich Low_complexity Low_complexity 4 126 0 6 847 244 246 62 48 chr1 34440446 34440530 -162754902 - PB1D10 SINE Alu -20 97 16 6 847 482 206 265 0 chr1 34440814 34440984 -162754448 + B3 SINE B2 2 216 0 6 847 1354 193 149 134 chr1 34441667 34441863 -162753569 + MT2A LTR ERVL 1 146 -387 6 847 956 151 201 0 chr1 34441863 34442042 -162753390 - B3 SINE B2 0 216 2 6 847 1354 198 146 128 chr1 34442042 34442321 -162753111 + MT2A LTR ERVL 147 462 -71 6 847 270 55 67 27 chr1 34442362 34442437 -162752995 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 6 847 1825 125 70 38 chr1 34442451 34442767 -162752665 - ORR1A3 LTR MaLR 0 326 1 6 847 355 244 26 0 chr1 34442986 34443064 -162752368 + RLTR20C LTR ERVK 31 110 -453 6 847 211 229 0 0 chr1 34443066 34443114 -162752318 + T-rich Low_complexity Low_complexity 1 48 0 6 847 1420 91 11 0 chr1 34443119 34443305 -162752127 - B2_Mm2 SINE B2 -7 188 1 6 847 2051 163 42 44 chr1 34443311 34443761 -162751671 + RLTR20C LTR ERVK 84 532 -2 6 847 279 0 0 0 chr1 34443909 34443940 -162751492 + (A)n Simple_repeat Simple_repeat 1 31 0 6 847 313 298 43 0 chr1 34447124 34447218 -162748214 - PB1 SINE Alu -29 98 1 6 847 804 168 0 0 chr1 34447289 34447438 -162747994 + GA-rich Low_complexity Low_complexity 2 150 0 6 847 261 0 0 0 chr1 34447438 34447467 -162747965 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 6 847 867 139 59 13 chr1 34447486 34447639 -162747793 + B3 SINE B2 48 207 -9 6 847 707 208 179 0 chr1 34448126 34448299 -162747133 - ID_B1 SINE B4 -18 206 3 6 847 1195 54 0 13 chr1 34448718 34448867 -162746565 + B1_Mus1 SINE Alu 1 147 -1 6 847 514 158 219 24 chr1 34449216 34449339 -162746093 + B1_Mur3 SINE Alu 3 149 0 6 847 251 273 11 33 chr1 34451688 34451779 -162743653 + PB1 SINE Alu 37 125 -2 6 847 595 176 111 30 chr1 34451787 34451922 -162743510 + B1_Mur2 SINE Alu 4 149 0 6 847 2193 154 21 11 chr1 34452054 34452427 -162743005 - RLTR14 LTR ERV1 -3 379 3 6 847 814 79 16 16 chr1 34452602 34452730 -162742702 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 6 847 1150 49 0 7 chr1 34452734 34452877 -162742555 - B1_Mm SINE Alu -5 142 1 6 847 357 62 0 0 chr1 34453492 34453540 -162741892 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 847 306 65 0 46 chr1 34453686 34453751 -162741681 + (TTTTTG)n Simple_repeat Simple_repeat 2 63 0 6 847 2441 181 72 22 chr1 34453866 34454369 -162741063 - RLTR24 LTR ERV1 -1 528 1 6 847 233 254 17 0 chr1 34454395 34454454 -162740978 + B3A SINE B2 2 61 -137 6 847 303 28 0 0 chr1 34454529 34454565 -162740867 + (CATA)n Simple_repeat Simple_repeat 3 38 0 6 847 30 27 0 0 chr1 34454605 34454642 -162740790 + AT_rich Low_complexity Low_complexity 1 37 0 6 847 232 177 113 0 chr1 34454840 34454902 -162740530 + PB1D10 SINE Alu 48 116 -1 6 847 216 163 0 0 chr1 34454906 34454949 -162740483 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 847 2158 166 54 21 chr1 34455297 34455721 -162739711 - RMER10A LTR ERVL -4 438 1 6 847 5988 78 0 0 chr1 34456991 34457755 -162737677 - L1_Mus1 LINE L1 0 6567 5804 6 847 252 0 0 0 chr1 34458676 34458704 -162736728 + (T)n Simple_repeat Simple_repeat 1 28 0 6 847 438 185 108 27 chr1 34458704 34458815 -162736617 - PB1D9 SINE Alu 0 120 1 6 847 216 37 0 0 chr1 34458815 34458842 -162736590 + B1_Mus2 SINE Alu 77 103 -44 6 847 803 172 48 113 chr1 34458902 34459131 -162736301 - ORR1C1 LTR MaLR -164 214 1 6 847 363 223 48 10 chr1 34459158 34459262 -162736170 + PB1D10 SINE Alu 10 117 0 6 847 1286 148 5 0 chr1 34459648 34459858 -162735574 + URR1B DNA MER1_type 9 219 -6 6 847 765 56 0 36 chr1 34460546 34460658 -162734774 - B1_Mur4 SINE Alu 0 150 43 6 847 468 216 0 0 chr1 34460744 34460892 -162734540 + CT-rich Low_complexity Low_complexity 2 149 0 6 847 280 150 0 91 chr1 34460956 34461022 -162734410 - B1_Mus1 SINE Alu -88 60 1 6 847 221 390 17 0 chr1 34461793 34461911 -162733521 + PB1D9 SINE Alu 1 120 0 6 847 518 228 20 14 chr1 34462298 34462445 -162732987 - RMER5 LTR ERV1 -8 526 379 6 847 628 244 52 37 chr1 34462462 34462565 -162732867 - Lx9 LINE L1 -3 7641 7538 6 847 186 43 0 0 chr1 34462565 34462588 -162732844 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 847 628 244 52 37 chr1 34462588 34462756 -162732676 - Lx9 LINE L1 -107 7537 7367 6 847 2146 244 93 34 chr1 34462756 34463380 -162732052 + Lx9 LINE L1 6712 7372 -272 6 847 408 278 39 19 chr1 34463399 34463553 -162731879 - RMER5 LTR ERV1 -157 377 221 6 847 3445 140 62 12 chr1 34463553 34464151 -162731281 + RMER1B Other Other 419 1046 -20 6 847 279 192 67 126 chr1 34464165 34464284 -162731148 - RMER5 LTR ERV1 -422 112 1 6 847 220 307 56 11 chr1 34464460 34464549 -162730883 - PB1D10 SINE Alu -12 105 13 6 847 655 181 0 0 chr1 34464629 34464745 -162730687 - B1_Mur4 SINE Alu 0 150 35 6 847 555 16 0 0 chr1 34464755 34464819 -162730613 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 847 962 94 0 7 chr1 34464819 34464949 -162730483 - B1_Mm SINE Alu -10 137 8 6 847 242 116 22 44 chr1 34465593 34465638 -162729794 + ID2 SINE ID 2 45 -38 6 847 189 0 0 0 chr1 34465724 34465745 -162729687 + (TTA)n Simple_repeat Simple_repeat 2 22 0 6 847 1139 62 14 14 chr1 34467091 34467239 -162728193 - B1_Mus1 SINE Alu 0 148 1 6 847 343 291 47 0 chr1 34467400 34467486 -162727946 + RSINE1 SINE B4 49 138 -27 6 847 393 22 0 0 chr1 34467487 34467533 -162727899 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 847 510 17 0 0 chr1 34467533 34467591 -162727841 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 847 366 203 0 14 chr1 34467664 34467734 -162727698 - Lx8 LINE L1 -140 7333 7265 6 847 936 301 72 73 chr1 34467757 34468099 -162727333 - L1M2 LINE L1 -902 5241 4898 6 847 3718 31 28 0 chr1 34468099 34468523 -162726909 - RLTR10C LTR ERVK 0 436 1 6 847 936 301 72 73 chr1 34468523 34468821 -162726611 - L1M2 LINE L1 -1246 4897 4602 6 847 921 148 14 0 chr1 34468852 34468994 -162726438 - B1_Mur4 SINE Alu -2 148 5 6 847 670 226 54 85 chr1 34469018 34469241 -162726191 - B3 SINE B2 0 216 1 6 847 1457 222 117 5 chr1 34469330 34469697 -162725735 + MTD LTR MaLR 12 419 0 6 847 404 316 29 0 chr1 34469700 34469871 -162725561 - L1M2 LINE L1 -1584 4559 4384 6 847 421 94 376 0 chr1 34469889 34470006 -162725426 - B2_Mm2 SINE B2 -34 161 1 6 847 526 200 17 0 chr1 34470007 34470122 -162725310 - L1M2 LINE L1 -1748 4395 4279 6 847 269 267 47 100 chr1 34470144 34470294 -162725138 - L1M2 LINE L1 -2041 4099 3958 6 847 520 196 65 0 chr1 34470296 34470403 -162725029 - B1_Mur2 SINE Alu -34 115 2 6 847 28 0 0 0 chr1 34470559 34470587 -162724845 + AT_rich Low_complexity Low_complexity 1 28 0 6 847 373 221 13 0 chr1 34470643 34470720 -162724712 - B1_Mur4 SINE Alu -61 89 12 6 847 243 250 0 154 chr1 34470647 34470751 -162724681 - MT2B LTR ERVL -362 239 152 6 847 1018 276 89 56 chr1 34470807 34471247 -162724185 - L1_Mur3 LINE L1 -1949 3931 3473 6 847 198 0 0 0 chr1 34471247 34471269 -162724163 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 847 1018 276 89 56 chr1 34471269 34471366 -162724066 - L1_Mur3 LINE L1 -2408 3472 3376 6 847 471 257 168 14 chr1 34471379 34471462 -162723970 + L1_Mur3 LINE L1 3065 3151 -2729 6 847 1505 58 16 10 chr1 34471462 34471654 -162723778 + B2_Mm2 SINE B2 1 193 -2 6 847 471 257 168 14 chr1 34471654 34471850 -162723582 + L1_Mur3 LINE L1 3152 3387 -2493 6 848 1014 285 31 8 chr1 34472723 34473080 -162722352 - RLTR6-int LTR ERV1 -138 7640 7276 6 848 1226 157 5 0 chr1 34473288 34473479 -162721953 - RMER16-int LTR ERVK -1424 3982 3791 7 848 3751 166 11 11 chr1 34473525 34474175 -162721257 - ETnERV2-int LTR ERVK -1613 5793 5144 7 848 5749 162 30 35 chr1 34474416 34475757 -162719675 + L1Md_T LINE L1 99 1205 -5411 7 848 37222 31 0 0 chr1 34475763 34480180 -162715252 + L1Md_T LINE L1 1170 5586 -297 7 848 8188 54 0 0 chr1 34480180 34481176 -162714256 + L1Md_T LINE L1 5587 6582 0 7 848 253 105 0 0 chr1 34481455 34481493 -162713939 + B2_Mm2 SINE B2 1 38 -157 7 848 255 244 67 59 chr1 34481741 34481876 -162713556 + RLTR13D6 LTR ERVK 728 863 -39 7 848 5128 229 38 12 chr1 34481897 34482473 -162712959 - ETnERV2-int LTR ERVK -2253 5153 4577 7 848 1094 97 0 0 chr1 34482473 34482618 -162712814 + B1_Mus1 SINE Alu 1 145 -3 7 848 405 0 0 0 chr1 34482618 34482663 -162712769 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 848 5128 247 51 21 chr1 34482663 34483315 -162712117 - ETnERV2-int LTR ERVK -2830 4576 4084 7 848 3939 334 61 50 chr1 34484474 34485765 -162709667 - RLTR4_MM-int LTR ERV1 -2024 5577 4291 7 848 352 0 42 0 chr1 34485765 34485813 -162709619 + (TTG)n Simple_repeat Simple_repeat 2 51 0 7 848 1130 76 0 0 chr1 34485813 34485952 -162709480 - B1_Mm SINE Alu -3 144 6 7 848 3939 329 59 50 chr1 34485952 34488229 -162707203 - RLTR4_MM-int LTR ERV1 -3311 4290 1951 7 848 963 321 30 40 chr1 34488371 34488974 -162706458 - RLTR4_MM-int LTR ERV1 -3390 1673 1077 7 848 560 307 58 50 chr1 34489331 34489694 -162705738 - RLTR4_MM-int LTR ERV1 -4362 701 336 7 848 498 33 0 0 chr1 34490554 34490614 -162704818 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 7 848 299 216 144 19 chr1 34490960 34491064 -162704368 + PB1D10 SINE Alu 1 117 0 7 848 313 206 0 0 chr1 34491655 34491728 -162703704 - tRNA-Glu-GAG_ tRNA tRNA -2 73 1 7 848 231 317 27 55 chr1 34492185 34492295 -162703137 + PB1D9 SINE Alu 14 120 0 7 848 878 53 167 0 chr1 34492612 34492744 -162702688 + B2_Mm1a SINE B2 2 155 -38 7 848 643 110 131 33 chr1 34492836 34492958 -162702474 + B1_Mur3 SINE Alu 16 149 0 7 848 2452 62 124 11 chr1 34493013 34493369 -162702063 - MTA_Mm LTR MaLR 0 396 1 7 848 180 77 0 0 chr1 34493858 34493884 -162701548 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 848 402 179 0 25 chr1 34493898 34493978 -162701454 - AluG_3 SINE Alu -97 214 137 7 848 354 280 76 0 chr1 34494949 34495067 -162700365 + MER92C LTR ERV1 271 397 -157 7 848 210 189 0 19 chr1 34495187 34495241 -162700191 + A-rich Low_complexity Low_complexity 2 54 0 7 848 225 0 0 0 chr1 34495782 34495807 -162699625 + (A)n Simple_repeat Simple_repeat 1 25 0 7 848 22 0 0 0 chr1 34495861 34495883 -162699549 + GC_rich Low_complexity Low_complexity 1 22 0 7 848 854 150 14 7 chr1 34497269 34497417 -162698015 + B1_Mur4 SINE Alu 2 150 0 7 848 637 245 68 11 chr1 34497879 34498069 -162697363 + ID_B1 SINE B4 2 202 -22 7 848 591 273 55 33 chr1 34498119 34498301 -162697131 + B3A SINE B2 6 191 -7 7 848 24 53 0 0 chr1 34498327 34498365 -162697067 + AT_rich Low_complexity Low_complexity 1 38 0 7 848 549 121 31 6 chr1 34498780 34498886 -162696546 - PB1D9 SINE Alu -7 113 11 7 848 772 217 31 11 chr1 34498946 34499137 -162696295 - B2_Mm2 SINE B2 0 195 1 7 848 1196 54 0 0 chr1 34499278 34499425 -162696007 + B1_Mus1 SINE Alu 2 148 0 7 848 189 0 0 0 chr1 34499425 34499446 -162695986 + (A)n Simple_repeat Simple_repeat 1 21 0 7 848 548 253 63 32 chr1 34501724 34502032 -162693400 - RLTR15 LTR ERVK -17 342 1 1 848 793 146 39 59 chr1 34502597 34502750 -162692682 - B1_Mur4 SINE Alu 0 150 1 2 848 281 280 27 102 chr1 34502936 34503123 -162692309 - MLT1B LTR MaLR -176 214 42 3 848 689 214 134 18 chr1 34503119 34503290 -162692142 - B3 SINE B2 -3 213 23 4 848 424 281 111 43 chr1 34503291 34503822 -162691610 - L1_Rod LINE L1 -4128 1752 1182 5 848 231 343 7 0 chr1 34503868 34504005 -162691427 - L1_Rod LINE L1 -6533 1075 938 5 848 555 188 27 98 chr1 34504369 34504552 -162690880 - RLTR17 LTR ERVK -418 274 105 6 848 213 108 0 0 chr1 34504763 34504800 -162690632 + (A)n Simple_repeat Simple_repeat 1 37 0 7 848 236 247 34 80 chr1 34505039 34505127 -162690305 - L1MB8 LINE L1 -77 6101 6018 8 848 512 263 159 4 chr1 34505627 34505860 -162689572 - L1MB8 LINE L1 -191 5987 5719 8 848 738 183 84 0 chr1 34506031 34506162 -162689270 - B1_Mur2 SINE Alu -4 145 4 9 848 1471 125 42 0 chr1 34506381 34506597 -162688835 + URR1B DNA MER1_type 1 225 0 1 848 1057 99 102 28 chr1 34506623 34506800 -162688632 - B2_Mm2 SINE B2 -5 190 1 1 848 516 231 124 0 chr1 34506831 34506952 -162688480 + RSINE1 SINE B4 2 137 -28 1 848 23 25 0 24 chr1 34506959 34506985 -162688447 + AT_rich Low_complexity Low_complexity 1 26 0 1 848 849 171 50 0 chr1 34506985 34507125 -162688307 + B1_Mus1 SINE Alu 2 148 0 1 848 23 25 0 24 chr1 34507125 34507139 -162688293 + AT_rich Low_complexity Low_complexity 1 14 0 1 848 253 210 191 48 chr1 34507246 34507319 -162688113 - MTE2b LTR MaLR -1 378 289 1 848 2668 86 177 2 chr1 34507319 34507772 -162687660 - RLTR47_MM LTR ERV1 0 532 1 1 848 253 210 191 48 chr1 34507772 34507803 -162687629 - MTE2b LTR MaLR -91 288 259 1 848 594 294 96 5 chr1 34507819 34508007 -162687425 - MTE2b LTR MaLR -173 206 2 1 848 298 292 158 9 chr1 34508009 34508123 -162687309 - MTE2b-int LTR MaLR -1 1579 1449 1 848 1890 299 95 36 chr1 34508143 34508481 -162686951 - MTE2b-int LTR MaLR -318 1262 893 1 848 1219 54 7 0 chr1 34508481 34508628 -162686804 - B1_Mus1 SINE Alu 0 148 1 1 848 1890 278 55 30 chr1 34508628 34509371 -162686061 - MTE2b-int LTR MaLR -688 892 3 1 848 652 265 99 31 chr1 34509374 34509622 -162685810 - MTEb LTR MaLR -35 344 63 1 848 736 196 179 31 chr1 34509627 34509822 -162685610 - URR1A DNA MER1_type -2 224 1 2 848 256 235 14 42 chr1 34510548 34510619 -162684813 - ORR1E LTR MaLR -2 357 289 2 848 956 256 83 78 chr1 34510638 34510685 -162684747 - MTC-int LTR MaLR -237 1021 972 2 848 269 82 0 20 chr1 34510685 34510735 -162684697 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 2 848 956 256 83 78 chr1 34510735 34510840 -162684592 - MTC-int LTR MaLR -287 971 874 2 848 1916 191 30 14 chr1 34510840 34511207 -162684225 + ORR1D1 LTR MaLR 1 373 -1 2 848 972 237 113 68 chr1 34511207 34511651 -162683781 - MTC-int LTR MaLR -385 873 294 2 848 573 60 0 0 chr1 34511651 34511735 -162683697 - L1Md_F2 LINE L1 0 6582 6499 2 848 972 230 111 143 chr1 34511735 34511884 -162683548 - MTC-int LTR MaLR -965 293 93 2 848 261 0 0 0 chr1 34511888 34511917 -162683515 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 848 977 50 0 0 chr1 34511917 34512037 -162683395 - B1_Mus2 SINE Alu -22 125 6 2 848 525 195 48 63 chr1 34511929 34512055 -162683377 - B4 SINE B4 -88 204 81 2 848 1455 190 69 14 chr1 34512065 34512353 -162683079 + MTD LTR MaLR 114 417 -2 2 848 566 197 124 7 chr1 34512353 34512478 -162682954 - MTD LTR MaLR -47 372 230 3 848 285 151 0 19 chr1 34512479 34512533 -162682899 - MTD LTR MaLR -137 282 230 3 848 788 230 68 153 chr1 34512534 34512842 -162682590 - MTD LTR MaLR -137 282 1 3 848 201 74 0 0 chr1 34513858 34513885 -162681547 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 3 848 408 320 76 65 chr1 34513885 34514162 -162681270 - Lx8 LINE L1 -34 7439 7160 3 848 329 150 175 0 chr1 34514272 34514352 -162681080 - Lx8 LINE L1 -491 6982 6889 3 848 893 182 0 13 chr1 34514489 34514639 -162680793 + B1_Mur4 SINE Alu 2 149 -1 3 848 1046 180 77 0 chr1 34514642 34514836 -162680596 - B3 SINE B2 -6 210 2 3 848 445 269 29 43 chr1 34514871 34515011 -162680421 - RSINE1 SINE B4 -21 144 7 3 848 1144 88 0 0 chr1 34515256 34515404 -162680028 - B1_Mus1 SINE Alu 0 148 1 3 848 628 299 6 25 chr1 34515588 34515749 -162679683 - RSINE1 SINE B4 0 165 8 3 848 227 281 91 105 chr1 34515781 34515801 -162679631 - B4A SINE B4 -46 246 228 4 848 195 42 0 0 chr1 34515801 34515825 -162679607 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 4 848 572 218 71 25 chr1 34515825 34515956 -162679476 - ID_B1 SINE B4 -65 227 91 4 848 539 266 42 0 chr1 34517581 34517724 -162677708 + B1F SINE Alu 1 149 0 4 848 780 207 7 7 chr1 34517772 34517913 -162677519 + B1_Mur2 SINE Alu 9 149 0 4 848 234 188 10 59 chr1 34517914 34518016 -162677416 + (CAAA)n Simple_repeat Simple_repeat 2 98 0 4 848 1009 121 7 32 chr1 34518036 34518190 -162677242 + B1_Mur4 SINE Alu 1 150 0 4 848 216 97 0 0 chr1 34518209 34518240 -162677192 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 848 722 302 11 11 chr1 34518652 34518833 -162676599 - B3A SINE B2 -16 182 2 4 848 427 322 35 61 chr1 34518835 34519063 -162676369 - ID_B1 SINE B4 -2 222 1 4 848 327 302 37 44 chr1 34519096 34519231 -162676201 - RSINE1 SINE B4 -20 145 12 4 848 300 275 118 42 chr1 34519271 34519415 -162676017 + MIR SINE MIR 1 155 -107 5 848 1257 34 0 7 chr1 34520965 34521112 -162674320 + B1_Mm SINE Alu 2 147 0 5 848 282 73 0 0 chr1 34521112 34521153 -162674279 + (A)n Simple_repeat Simple_repeat 1 41 0 5 848 875 296 100 27 chr1 34521259 34521738 -162673694 - L1MB8 LINE L1 -191 5987 5474 5 848 484 263 139 0 chr1 34521767 34521904 -162673528 - RSINE1 SINE B4 -2 163 8 5 848 771 192 47 27 chr1 34522029 34522179 -162673253 + B3A SINE B2 1 153 -45 5 848 423 0 0 0 chr1 34522180 34522227 -162673205 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 848 589 297 85 0 chr1 34522233 34522492 -162672940 - L1MB5 LINE L1 -171 6003 5723 5 848 384 220 13 91 chr1 34522545 34522724 -162672708 - PB1D9 SINE Alu 0 150 1 5 848 581 288 83 28 chr1 34522724 34522939 -162672493 - B4A SINE B4 -61 231 5 5 848 495 295 113 30 chr1 34523098 34523364 -162672068 - B4A SINE B4 0 292 5 6 848 744 239 47 26 chr1 34523391 34523584 -162671848 + B3A SINE B2 1 197 -1 6 848 689 147 0 9 chr1 34523591 34523701 -162671731 - B1_Mus1 SINE Alu -1 147 39 6 848 302 221 115 0 chr1 34523750 34523854 -162671578 - L1MB5 LINE L1 -757 5389 5274 5 848 739 165 113 0 chr1 34523868 34524001 -162671431 + B1_Mus1 SINE Alu 1 148 0 6 848 254 182 0 15 chr1 34524045 34524112 -162671320 + GA-rich Low_complexity Low_complexity 3 68 0 6 848 566 202 125 0 chr1 34524121 34524225 -162671207 + B1_Mur2 SINE Alu 2 118 -31 6 848 398 273 67 67 chr1 34524225 34524261 -162671171 + MT2B LTR ERVL 180 302 -299 6 848 346 272 84 92 chr1 34524261 34524500 -162670932 - L1MB5 LINE L1 -1740 4406 4170 5 848 239 236 0 18 chr1 34524504 34524560 -162670872 + CT-rich Low_complexity Low_complexity 1 55 0 6 848 249 264 11 0 chr1 34525795 34525826 -162669606 + A-rich Low_complexity Low_complexity 3 34 0 6 848 1654 31 0 10 chr1 34525826 34526021 -162669411 + B2_Mm1a SINE B2 1 193 0 6 848 249 264 11 0 chr1 34526021 34526076 -162669356 + A-rich Low_complexity Low_complexity 35 89 0 7 848 1387 92 5 0 chr1 34526281 34526466 -162668966 + B2_Mm1a SINE B2 1 186 -7 7 848 368 274 8 42 chr1 34526480 34526598 -162668834 + PB1D10 SINE Alu 4 117 0 7 848 259 286 0 0 chr1 34526872 34526928 -162668504 - ID4 SINE ID -2 81 26 7 848 405 0 0 0 chr1 34527279 34527324 -162668108 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 7 848 386 63 63 0 chr1 34527344 34527407 -162668025 - B2_Mm1a SINE B2 0 193 127 7 848 1040 95 40 0 chr1 34527477 34527625 -162667807 - B2_Mm2 SINE B2 -41 154 1 7 848 597 288 47 33 chr1 34527780 34527992 -162667440 + B4A SINE B4 4 218 -74 7 848 225 0 0 0 chr1 34528024 34528049 -162667383 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 848 225 167 232 43 chr1 34528183 34528252 -162667180 + PB1D10 SINE Alu 17 98 -19 7 848 582 15 0 0 chr1 34529148 34529215 -162666217 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 848 180 0 0 0 chr1 34529215 34529234 -162666198 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 848 21 0 0 0 chr1 34529692 34529713 -162665719 + GC_rich Low_complexity Low_complexity 1 21 0 8 848 217 192 39 0 chr1 34531033 34531085 -162664347 + (CCCCAG)n Simple_repeat Simple_repeat 6 59 0 8 848 1231 64 13 0 chr1 34531564 34531720 -162663712 + B2_Mm2 SINE B2 3 160 -35 8 848 259 310 111 79 chr1 34532254 34532443 -162662989 + MLT2B5 LTR ERVL 121 315 -402 8 848 1311 229 68 0 chr1 34532337 34532630 -162662802 + MTEb LTR MaLR 67 379 0 8 848 229 319 14 14 chr1 34532724 34532794 -162662638 - tRNA-Ala-GCA tRNA tRNA -5 70 1 8 848 1858 125 77 3 chr1 34532862 34533159 -162662273 - ORR1A2 LTR MaLR -8 319 1 8 848 831 222 91 0 chr1 34533160 34533336 -162662096 - B3 SINE B2 -24 192 1 8 848 553 246 0 9 chr1 34533355 34533470 -162661962 - ID_B1 SINE B4 -5 219 106 9 848 261 291 18 171 chr1 34533504 34533611 -162661821 - B1F SINE Alu -5 144 64 9 848 909 163 0 33 chr1 34533611 34533763 -162661669 - B1_Mus2 SINE Alu 0 147 1 9 848 261 291 18 171 chr1 34533763 34533825 -162661607 - B1F SINE Alu -86 63 1 9 848 1103 121 0 13 chr1 34533834 34534060 -162661372 + (TTC)n Simple_repeat Simple_repeat 1 223 0 9 848 1232 55 0 0 chr1 34534823 34534969 -162660463 + B1_Mus1 SINE Alu 1 146 -2 9 848 351 0 0 0 chr1 34534994 34535033 -162660399 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 848 719 160 0 9 chr1 34535061 34535168 -162660264 - B1_Mur4 SINE Alu -43 107 2 9 848 1153 307 60 33 chr1 34535270 34535819 -162659613 + L1_Mur3 LINE L1 5299 5862 -18 9 848 498 17 0 0 chr1 34535864 34535923 -162659509 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 848 280 224 21 115 chr1 34536245 34536341 -162659091 - RLTR24 LTR ERV1 -74 455 369 9 848 1144 222 44 26 chr1 34536671 34536944 -162658488 - MTEa LTR MaLR 0 379 102 1 848 257 248 60 103 chr1 34537001 34537118 -162658314 + PB1D10 SINE Alu 5 116 -1 1 848 476 179 208 0 chr1 34537147 34537253 -162658179 - B1_Mus2 SINE Alu -19 128 1 1 848 238 250 31 15 chr1 34537271 34537336 -162658096 - ID4_ SINE ID -12 71 6 1 848 3257 95 120 38 chr1 34538015 34538539 -162656893 + RMER2 LTR ERV1 1 567 0 1 848 875 93 0 0 chr1 34538539 34538657 -162656775 - B2_Mm2 SINE B2 -77 118 1 1 848 461 245 20 0 chr1 34539536 34539634 -162655798 + B3 SINE B2 1 100 -116 1 848 1291 77 6 0 chr1 34539628 34539797 -162655635 - B2_Mm1a SINE B2 -22 171 2 1 848 942 297 21 32 chr1 34539932 34540217 -162655215 - B4A SINE B4 0 292 11 1 848 180 0 0 0 chr1 34540255 34540275 -162655157 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 848 259 211 19 2 chr1 34540756 34540816 -162654616 + B3 SINE B2 3 62 -133 1 848 407 280 0 0 chr1 34540839 34540939 -162654493 - B1F1 SINE Alu -2 147 48 1 848 31 26 0 0 chr1 34541025 34541063 -162654369 + AT_rich Low_complexity Low_complexity 1 38 0 1 848 813 191 0 0 chr1 34541080 34541206 -162654226 + B1_Mur2 SINE Alu 14 139 -10 1 848 252 0 0 0 chr1 34541206 34541234 -162654198 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 848 224 283 0 0 chr1 34541257 34541310 -162654122 + ID4_ SINE ID 9 61 -22 1 848 345 221 66 0 chr1 34541374 34541450 -162653982 + MTE2b LTR MaLR 12 92 -287 1 848 356 241 213 0 chr1 34541857 34542064 -162653368 - L1MA6 LINE L1 -15 6285 6035 1 848 608 263 188 14 chr1 34543155 34543363 -162652069 - MTEa LTR MaLR -4 375 132 1 848 453 116 0 0 chr1 34543374 34543443 -162651989 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 1 848 551 219 52 52 chr1 34543443 34543597 -162651835 + MTD LTR MaLR 24 177 -242 1 848 622 252 90 54 chr1 34543745 34543967 -162651465 + B4A SINE B4 5 234 -58 1 848 1268 21 7 0 chr1 34544006 34544151 -162651281 + B1_Mus2 SINE Alu 2 147 0 1 848 377 55 40 14 chr1 34544151 34544225 -162651207 + (CAAAAA)n Simple_repeat Simple_repeat 5 80 0 1 848 980 157 22 27 chr1 34544335 34544519 -162650913 + B2_Mm2 SINE B2 1 183 -12 1 848 1047 94 0 0 chr1 34544519 34544668 -162650764 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 1 848 799 141 86 36 chr1 34544679 34544819 -162650613 + B1_Mur3 SINE Alu 1 147 -2 1 848 336 124 20 40 chr1 34545265 34545366 -162650066 + (CAGA)n Simple_repeat Simple_repeat 4 102 0 1 848 472 191 43 0 chr1 34545551 34545645 -162649787 + ORR1C2 LTR MaLR 1 98 -286 1 848 1160 43 0 0 chr1 34545648 34545788 -162649644 + L1Md_F2 LINE L1 5447 5586 -297 1 848 8175 48 1 9 chr1 34545788 34546792 -162648640 + L1Md_F2 LINE L1 5587 6582 0 1 848 244 216 40 26 chr1 34546824 34546854 -162648578 + ORR1C2 LTR MaLR 39 68 -258 1 848 369 0 0 0 chr1 34546854 34546895 -162648537 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 848 780 180 44 51 chr1 34546895 34547053 -162648379 + ORR1C2 LTR MaLR 191 347 -37 1 848 238 121 0 0 chr1 34547760 34547793 -162647639 + ORR1C2 LTR MaLR 352 384 0 1 848 3539 110 43 129 chr1 34548096 34548808 -162646624 - RMER6A LTR ERVK -59 697 47 1 848 397 256 107 0 chr1 34549044 34549165 -162646267 + MLT1F-int LTR MaLR 354 487 -1002 1 848 24 67 0 0 chr1 34550453 34550498 -162644934 + AT_rich Low_complexity Low_complexity 1 45 0 1 848 986 142 0 0 chr1 34550634 34550782 -162644650 + B1_Mur4 SINE Alu 3 150 0 1 848 215 31 31 0 chr1 34550796 34550828 -162644604 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 1 848 207 88 0 0 chr1 34551325 34551359 -162644073 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 1 848 673 197 34 34 chr1 34551810 34551957 -162643475 - B1_Mur2 SINE Alu -2 147 1 1 848 267 227 0 0 chr1 34552298 34552364 -162643068 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 848 313 203 14 61 chr1 34552384 34552531 -162642901 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 1 848 992 179 11 11 chr1 34552564 34552739 -162642693 - B2_Mm2 SINE B2 -14 181 7 1 848 596 316 24 72 chr1 34552745 34552953 -162642479 - B3A SINE B2 0 198 1 1 848 341 237 34 34 chr1 34552964 34553082 -162642350 + RMER5 LTR ERV1 104 221 -313 1 848 1474 216 104 31 chr1 34553091 34553477 -162641955 - MTD LTR MaLR -5 414 1 1 848 212 0 0 108 chr1 34553590 34553614 -162641818 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 848 1202 62 0 7 chr1 34553614 34553761 -162641671 - B1_Mus2 SINE Alu -1 146 1 1 848 212 0 0 108 chr1 34553761 34553773 -162641659 + (TTTTTG)n Simple_repeat Simple_repeat 3 13 0 1 848 1338 73 0 0 chr1 34554259 34554438 -162640994 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 848 422 143 0 13 chr1 34554438 34554516 -162640916 + GA-rich Low_complexity Low_complexity 2 78 0 1 848 1410 56 0 0 chr1 34554516 34554696 -162640736 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 848 377 363 64 6 chr1 34557559 34557731 -162637701 + MER2 DNA MER2_type 115 296 -49 1 848 658 188 75 20 chr1 34560707 34560895 -162634537 + B3 SINE B2 1 195 0 1 848 26 64 0 0 chr1 34560969 34561016 -162634416 + AT_rich Low_complexity Low_complexity 1 47 0 1 848 331 127 364 9 chr1 34561222 34561332 -162634100 - B2_Mm2 SINE B2 0 195 47 1 848 558 112 12 0 chr1 34561421 34561501 -162633931 - B2_Mm1t SINE B2 -110 83 3 1 848 1366 95 11 0 chr1 34561547 34561737 -162633695 - B2_Mm1t SINE B2 0 193 2 1 848 35 41 0 0 chr1 34561744 34561793 -162633639 + AT_rich Low_complexity Low_complexity 1 49 0 1 848 3488 240 86 49 chr1 34561794 34562979 -162632453 - RMER1B Other Other -23 1043 65 1 848 672 196 0 0 chr1 34563352 34563531 -162631901 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 848 389 238 41 0 chr1 34564261 34564363 -162631069 + PB1D7 SINE Alu 10 115 -5 1 848 748 259 41 60 chr1 34564368 34564530 -162630902 + ID_B1 SINE B4 6 167 -57 1 848 2238 92 38 12 chr1 34564530 34564849 -162630583 + ORR1A2 LTR MaLR 1 327 0 1 848 748 259 41 60 chr1 34564849 34564904 -162630528 + ID_B1 SINE B4 168 219 -5 1 848 314 275 113 15 chr1 34564920 34565053 -162630379 + B1F SINE Alu 1 146 -3 1 848 1530 160 104 99 chr1 34565066 34565089 -162630343 + ORR1C2 LTR MaLR 5 25 -359 1 848 3930 107 62 21 chr1 34565089 34565670 -162629762 + RLTR1D LTR ERV1 1 605 0 1 848 1530 160 104 99 chr1 34565670 34566020 -162629412 + ORR1C2 LTR MaLR 26 380 -4 1 848 571 289 13 20 chr1 34566050 34566202 -162629230 + ID_B1 SINE B4 70 220 -4 1 848 1955 116 61 33 chr1 34566237 34566437 -162628995 - RMER17C LTR ERVK 0 410 211 1 848 219 114 0 0 chr1 34566437 34566472 -162628960 + (CGAG)n Simple_repeat Simple_repeat 2 36 0 1 848 1955 116 61 33 chr1 34566472 34566662 -162628770 - RMER17C LTR ERVK -200 210 10 1 848 261 0 0 0 chr1 34566685 34566714 -162628718 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 848 432 0 0 0 chr1 34566715 34566763 -162628669 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1 848 753 204 203 34 chr1 34566974 34567313 -162628119 - RLTR9E LTR ERVK 0 409 14 1 848 192 40 0 0 chr1 34567313 34567338 -162628094 + (G)n Simple_repeat Simple_repeat 1 25 0 1 848 629 167 0 14 chr1 34567827 34567973 -162627459 + GA-rich Low_complexity Low_complexity 1 144 0 1 848 377 20 20 0 chr1 34568558 34568608 -162626824 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 848 348 272 0 22 chr1 34569398 34569582 -162625850 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 848 255 229 0 0 chr1 34569627 34569688 -162625744 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 848 244 200 0 0 chr1 34569695 34569745 -162625687 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 848 239 239 189 40 chr1 34569999 34570073 -162625359 - B4A SINE B4 -205 87 3 1 848 607 200 0 0 chr1 34571416 34571521 -162623911 + B3 SINE B2 2 106 -110 1 848 1719 140 33 104 chr1 34571524 34571837 -162623595 + ORR1A2 LTR MaLR 1 303 -43 1 848 1049 112 0 0 chr1 34571837 34571980 -162623452 + B1_Mus1 SINE Alu 1 143 -5 1 848 1719 132 35 97 chr1 34571980 34572000 -162623432 + ORR1A2 LTR MaLR 285 285 -42 1 848 1107 134 0 0 chr1 34572000 34572179 -162623253 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 848 1719 132 35 97 chr1 34572179 34572229 -162623203 + ORR1A2 LTR MaLR 285 327 0 1 848 377 315 0 21 chr1 34572229 34572323 -162623109 + B3 SINE B2 111 202 -14 1 848 627 206 156 0 chr1 34572955 34573097 -162622335 + B3A SINE B2 2 164 -34 1 848 288 0 0 0 chr1 34573097 34573129 -162622303 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 848 524 260 130 45 chr1 34573129 34573163 -162622269 + B3 SINE B2 164 193 -23 1 848 287 329 0 0 chr1 34573330 34573412 -162622020 - ID4_ SINE ID 0 83 2 1 848 1867 202 181 12 chr1 34573555 34574037 -162621395 + RMER4B LTR ERVK 23 585 0 1 848 243 203 0 0 chr1 34575047 34575116 -162620316 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 848 30 27 0 0 chr1 34575183 34575220 -162620212 + AT_rich Low_complexity Low_complexity 1 37 0 1 848 811 178 45 40 chr1 34575224 34575400 -162620032 - B2_Mm2 SINE B2 -18 177 1 1 848 753 89 0 0 chr1 34575440 34575541 -162619891 + B1_Mus1 SINE Alu 28 128 -20 1 848 310 307 64 28 chr1 34576800 34576941 -162618491 + HAL1-3A_ME LINE L1 2284 2429 -429 1 848 799 118 0 22 chr1 34576943 34577125 -162618307 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 848 713 114 0 41 chr1 34577132 34577381 -162618051 + GA-rich Low_complexity Low_complexity 1 238 0 1 848 357 138 0 0 chr1 34577415 34577495 -162617937 + (GGA)n Simple_repeat Simple_repeat 3 82 0 1 848 285 287 79 29 chr1 34577498 34577638 -162617794 + RMER17C LTR ERVK 198 344 -66 1 848 1695 249 4 70 chr1 34577662 34577724 -162617708 + L1_Mur3 LINE L1 4676 4726 -1154 1 848 1484 44 39 0 chr1 34577724 34577904 -162617528 + B2_Mm2 SINE B2 1 187 -8 1 848 1695 249 4 70 chr1 34577904 34578326 -162617106 + L1_Mur3 LINE L1 4727 5131 -749 1 848 2158 162 7 53 chr1 34578326 34578742 -162616690 - RMER10B LTR ERVL 0 398 2 1 848 1695 249 4 70 chr1 34578742 34578769 -162616663 + L1_Mur3 LINE L1 5132 5153 -727 1 848 364 258 103 0 chr1 34578806 34578903 -162616529 - RSINE1 SINE B4 -56 109 3 2 848 2249 102 3 64 chr1 34580211 34580556 -162614876 + ORR1A3 LTR MaLR 3 326 0 2 848 2195 149 85 3 chr1 34580859 34581235 -162614197 - MTB_Mm LTR MaLR 0 407 1 2 848 567 170 0 39 chr1 34582294 34582398 -162613034 - B1_Mur1 SINE Alu -1 148 49 2 848 729 201 22 0 chr1 34582391 34582530 -162612902 + ORR1C2 LTR MaLR 237 378 -6 2 848 2071 215 60 2 chr1 34582536 34582956 -162612476 - Lx6 LINE L1 -846 6614 6171 2 848 399 176 26 45 chr1 34582966 34583121 -162612311 + (TATATG)n Simple_repeat Simple_repeat 1 152 0 2 848 327 265 0 0 chr1 34583121 34583204 -162612228 - Lx7 LINE L1 -1501 6195 6113 2 848 817 99 0 24 chr1 34583498 34583622 -162611810 + B1_Mus2 SINE Alu 27 147 0 2 848 1083 288 87 165 chr1 34583804 34584017 -162611415 + L1_Mur3 LINE L1 3884 4109 -1771 2 848 1506 58 37 0 chr1 34584017 34584205 -162611227 + B2_Mm2 SINE B2 1 195 0 2 848 1083 288 87 165 chr1 34584205 34584315 -162611117 + L1_Mur3 LINE L1 4110 4194 -1686 2 848 943 138 14 14 chr1 34584315 34584462 -162610970 + B1_Mus2 SINE Alu 1 147 0 2 848 1083 288 87 165 chr1 34584462 34584906 -162610526 + L1_Mur3 LINE L1 4195 4588 -1292 2 848 414 142 19 4 chr1 34584906 34585017 -162610415 - B2_Mm2 SINE B2 -4 191 46 2 848 1083 288 87 165 chr1 34585017 34585044 -162610388 + L1_Mur3 LINE L1 4589 4613 -1267 2 848 1182 106 65 0 chr1 34585044 34585214 -162610218 - B2_Mm2 SINE B2 -14 181 1 2 848 1083 288 87 165 chr1 34585214 34585270 -162610162 + L1_Mur3 LINE L1 4614 4663 -1217 2 848 186 43 0 0 chr1 34585270 34585293 -162610139 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 848 216 67 0 0 chr1 34585293 34585322 -162610110 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 848 1083 288 87 165 chr1 34585322 34585865 -162609567 + L1_Mur3 LINE L1 4664 5252 -628 2 848 1593 53 0 0 chr1 34585865 34586055 -162609377 + B2_Mm1a SINE B2 3 192 -1 2 848 1083 288 87 165 chr1 34586055 34586219 -162609213 + L1_Mur3 LINE L1 5253 5424 -456 2 848 735 161 188 6 chr1 34586266 34586447 -162608985 + B3 SINE B2 3 216 0 2 848 833 259 6 0 chr1 34586464 34586630 -162608802 + B3A SINE B2 4 170 -28 2 848 300 219 26 52 chr1 34586653 34586730 -162608702 - B3 SINE B2 0 216 142 2 848 809 238 25 89 chr1 34586786 34587023 -162608409 + B3A SINE B2 1 214 -2 2 848 853 272 104 49 chr1 34587102 34587573 -162607859 - Lx8 LINE L1 -3 7470 6974 2 848 1288 313 61 42 chr1 34587572 34588030 -162607402 - Lx8 LINE L1 -1092 6381 5920 2 848 432 0 0 0 chr1 34588030 34588078 -162607354 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 848 1288 313 61 42 chr1 34588078 34588231 -162607201 - Lx8 LINE L1 -1554 5919 5757 2 848 414 0 0 0 chr1 34588231 34588277 -162607155 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 848 1288 257 44 50 chr1 34588277 34588500 -162606932 - Lx8 LINE L1 -393 5785 5532 2 848 659 191 17 23 chr1 34588500 34588677 -162606755 + T-rich Low_complexity Low_complexity 3 178 0 2 848 293 173 19 0 chr1 34588678 34588730 -162606702 + CT-rich Low_complexity Low_complexity 1 53 0 2 848 1131 52 7 7 chr1 34588730 34588884 -162606548 - B2_Mm2 SINE B2 -1 194 41 2 848 261 0 0 0 chr1 34588940 34588969 -162606463 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 848 1306 233 51 20 chr1 34588972 34589273 -162606159 - Lx8 LINE L1 -446 5434 5133 2 848 2021 170 40 35 chr1 34589273 34589474 -162605958 + RMER10B LTR ERVL 1 202 -196 2 848 968 68 8 0 chr1 34589474 34589607 -162605825 + (TCTCC)n Simple_repeat Simple_repeat 3 136 0 2 848 2021 170 40 35 chr1 34589607 34589801 -162605631 + RMER10B LTR ERVL 203 397 -1 2 848 1306 233 51 20 chr1 34589801 34589853 -162605579 - Lx8 LINE L1 -748 5132 5070 2 848 765 112 0 0 chr1 34590961 34591068 -162604364 - B1_Mus1 SINE Alu -20 128 22 2 848 548 178 152 79 chr1 34591102 34591267 -162604165 + B2_Mm2 SINE B2 1 177 -18 2 848 29 0 0 0 chr1 34591267 34591296 -162604136 + AT_rich Low_complexity Low_complexity 1 29 0 2 848 387 105 0 0 chr1 34591359 34591416 -162604016 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 848 180 0 0 0 chr1 34594706 34594726 -162600706 + (T)n Simple_repeat Simple_repeat 1 20 0 2 848 2670 67 36 123 chr1 34596708 34596842 -162598590 - MTB_Mm LTR MaLR 0 407 284 2 848 3359 57 11 30 chr1 34596842 34597280 -162598152 + L1_Mus2 LINE L1 6137 6566 0 2 848 2670 67 36 123 chr1 34597280 34597591 -162597841 - MTB_Mm LTR MaLR -124 283 1 2 848 580 191 164 51 chr1 34598155 34598332 -162597100 - B3A SINE B2 0 198 2 2 848 25 31 0 0 chr1 34598901 34598933 -162596499 + AT_rich Low_complexity Low_complexity 1 32 0 2 848 348 235 118 39 chr1 34599286 34599388 -162596044 - PB1D9 SINE Alu -6 114 5 2 848 507 261 0 104 chr1 34599468 34599622 -162595810 + B4 SINE B4 155 292 0 2 848 368 357 76 6 chr1 34599901 34599950 -162595482 + B4 SINE B4 31 90 -202 2 848 560 245 0 154 chr1 34599950 34600119 -162595313 + B1_Mur1 SINE Alu 2 144 -5 2 848 1645 156 37 93 chr1 34600184 34600526 -162594906 - RMER17C LTR ERVK 0 410 91 2 848 597 64 0 0 chr1 34600526 34600604 -162594828 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 848 1645 156 37 93 chr1 34600604 34600692 -162594740 - RMER17C LTR ERVK -320 90 4 2 848 405 0 0 0 chr1 34600692 34600737 -162594695 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 848 364 257 265 20 chr1 34601586 34601733 -162593699 + Lx7 LINE L1 6166 6348 -1348 2 848 1502 124 135 20 chr1 34601734 34601989 -162593443 + RLTR20D LTR ERVK 3 270 -298 2 848 3431 33 5 0 chr1 34601989 34602383 -162593049 + MTA_Mm LTR MaLR 1 396 0 2 848 1502 185 40 19 chr1 34602383 34602605 -162592827 + RLTR20D LTR ERVK 271 568 0 2 13 2219 272 20 54 chr1 34602605 34603288 -162592144 + Lx7 LINE L1 6342 7001 -695 2 849 201 39 0 0 chr1 34603303 34603329 -162592103 + (T)n Simple_repeat Simple_repeat 1 26 0 2 849 507 33 0 0 chr1 34603330 34603391 -162592041 + (GGA)n Simple_repeat Simple_repeat 1 61 0 2 849 450 321 79 0 chr1 34603399 34603564 -162591868 + Lx7 LINE L1 7156 7333 -363 2 849 312 27 0 0 chr1 34603591 34603628 -162591804 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 849 348 24 0 0 chr1 34603628 34603668 -162591764 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 849 1425 73 11 0 chr1 34603723 34603902 -162591530 - B2_Mm2 SINE B2 -14 181 1 2 849 3081 245 102 62 chr1 34603905 34604898 -162590534 + ORR1D2-int LTR MaLR 339 1370 0 2 849 981 256 96 45 chr1 34605376 34605708 -162589724 + ORR1D2 LTR MaLR 16 364 -6 2 849 378 228 184 0 chr1 34605714 34605828 -162589604 + ORR1D2-int LTR MaLR 1 135 -1123 2 849 1166 271 49 74 chr1 34605826 34606257 -162589175 + ORR1D2-int LTR MaLR 523 942 -316 2 849 2267 101 6 3 chr1 34606422 34606740 -162588692 - ORR1A2 LTR MaLR -8 319 1 2 849 578 350 53 4 chr1 34606786 34607067 -162588365 + RodERV21-int LTR ERV1 3490 3784 -1207 2 849 485 128 0 11 chr1 34607219 34607280 -162588152 + (TCC)n Simple_repeat Simple_repeat 1 60 0 2 849 1029 113 0 17 chr1 34607280 34607460 -162587972 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 849 485 128 0 11 chr1 34607460 34607485 -162587947 + (TCC)n Simple_repeat Simple_repeat 3 27 0 2 849 268 241 61 121 chr1 34607606 34607705 -162587727 + MTEb LTR MaLR 282 374 -5 2 849 1462 228 90 62 chr1 34608075 34608112 -162587320 - RLTR20B3 LTR ERVK -56 521 485 2 849 261 0 0 0 chr1 34608112 34608141 -162587291 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 849 1462 228 90 62 chr1 34608141 34608590 -162586842 - RLTR20B3 LTR ERVK -93 484 22 2 849 261 0 0 0 chr1 34610141 34610170 -162585262 + (A)n Simple_repeat Simple_repeat 1 29 0 2 849 299 276 53 0 chr1 34610784 34610860 -162584572 + RSINE1 SINE B4 57 136 -29 2 849 276 329 73 0 chr1 34610874 34610956 -162584476 + PB1D10 SINE Alu 11 98 -19 2 849 948 93 35 0 chr1 34610978 34611150 -162584282 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 2 849 254 284 40 50 chr1 34611577 34611588 -162583844 + ID SINE ID 73 82 -142 2 849 465 196 45 14 chr1 34611588 34611701 -162583731 + B1_Mur4 SINE Alu 3 117 0 2 849 445 298 47 6 chr1 34611734 34611906 -162583526 + L1M5 LINE L1 5463 5641 -532 2 849 535 274 61 61 chr1 34612276 34612439 -162582993 - RSINE1 SINE B4 0 165 3 2 849 1187 62 0 0 chr1 34612579 34612725 -162582707 + B1_Mm SINE Alu 2 147 0 2 849 274 0 73 0 chr1 34612726 34612767 -162582665 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 849 377 363 64 6 chr1 34614121 34614293 -162581139 - MER2 DNA MER2_type -49 296 115 2 849 405 0 0 0 chr1 34615781 34615826 -162579606 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 849 1243 41 0 0 chr1 34617255 34617401 -162578031 - B1_Mm SINE Alu 0 147 2 2 849 188 214 0 18 chr1 34617458 34617515 -162577917 + G-rich Low_complexity Low_complexity 5 60 0 2 849 360 177 279 0 chr1 34618054 34618133 -162577299 - B3A SINE B2 -84 114 14 2 849 22 0 0 0 chr1 34618144 34618166 -162577266 + AT_rich Low_complexity Low_complexity 1 22 0 2 849 234 0 0 0 chr1 34618253 34618279 -162577153 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 2 849 195 42 0 0 chr1 34618281 34618305 -162577127 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 2 849 738 318 15 5 chr1 34618307 34618509 -162576923 - Lx8 LINE L1 -152 7321 7118 2 849 1009 114 65 24 chr1 34618832 34619002 -162576430 - B2_Mm2 SINE B2 -14 181 5 2 849 297 0 0 0 chr1 34619116 34619149 -162576283 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 849 528 16 0 0 chr1 34619149 34619209 -162576223 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 849 198 71 0 0 chr1 34619221 34619249 -162576183 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2 849 852 72 13 86 chr1 34619265 34619417 -162576015 - L1_Mus3 LINE L1 -4 6634 6494 2 849 375 23 0 0 chr1 34619494 34619538 -162575894 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 849 269 0 56 0 chr1 34619826 34619862 -162575570 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 849 232 27 54 0 chr1 34620354 34620391 -162575041 + (GTTTG)n Simple_repeat Simple_repeat 1 39 0 2 849 712 187 7 56 chr1 34620393 34620535 -162574897 - B1_Mur3 SINE Alu -13 136 2 2 849 180 0 0 0 chr1 34620552 34620572 -162574860 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2 849 623 250 68 42 chr1 34620578 34620770 -162574662 - B3A SINE B2 0 198 2 2 849 1344 64 41 41 chr1 34620837 34621032 -162574400 - B2_Mm2 SINE B2 0 195 1 2 849 755 286 24 0 chr1 34621056 34621266 -162574166 - B3 SINE B2 0 216 2 2 849 19706 66 12 14 chr1 34622095 34625410 -162570022 - L1VL4 LINE L1 -57 3502 194 2 849 341 142 0 46 chr1 34625433 34625553 -162569879 - B2_Mm2 SINE B2 0 195 47 2 849 1223 104 17 0 chr1 34625589 34625762 -162569670 - B2_Mm1t SINE B2 -14 179 4 2 849 435 38 0 0 chr1 34626412 34626465 -162568967 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 849 2019 138 17 61 chr1 34626865 34627227 -162568205 + ORR1A1 LTR MaLR 1 346 0 2 849 4063 103 34 20 chr1 34627228 34627825 -162567607 + RLTR1D LTR ERV1 1 605 0 3 849 207 0 0 0 chr1 34628452 34628475 -162566957 + (CACAG)n Simple_repeat Simple_repeat 5 27 0 3 849 894 216 29 129 chr1 34628781 34629121 -162566311 + RLTR11B LTR ERVK 1 306 -147 3 849 681 172 32 58 chr1 34629194 34629336 -162566096 + B1_Mur4 SINE Alu 1 138 -12 3 849 215 31 31 0 chr1 34629336 34629368 -162566064 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 849 681 172 32 58 chr1 34629368 34629379 -162566053 + B1_Mur4 SINE Alu 139 149 -1 3 849 2014 126 76 0 chr1 34629507 34629809 -162565623 - ORR1A3 LTR MaLR -1 325 1 3 849 493 307 140 53 chr1 34629913 34630170 -162565262 + B4 SINE B4 2 272 -20 3 849 1848 111 182 26 chr1 34630170 34630511 -162564921 + ORR1B1 LTR MaLR 1 394 0 3 849 217 320 0 74 chr1 34630511 34630536 -162564896 + RSINE1 SINE B4 133 156 -9 3 849 273 119 0 0 chr1 34630570 34630612 -162564820 + (A)n Simple_repeat Simple_repeat 1 42 0 3 849 1225 129 0 25 chr1 34630954 34631153 -162564279 + B2_Mm2 SINE B2 2 195 0 3 849 544 307 127 41 chr1 34631398 34631557 -162563875 - B4A SINE B4 0 292 129 3 849 1092 78 162 0 chr1 34631557 34631724 -162563708 - B2_Mm2 SINE B2 0 195 2 3 849 544 307 127 41 chr1 34631724 34631832 -162563600 - B4A SINE B4 -164 128 2 3 849 252 0 0 0 chr1 34632571 34632599 -162562833 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 849 1864 241 48 34 chr1 34632600 34633103 -162562329 + Lx9 LINE L1 6481 6990 -654 3 849 22 35 0 0 chr1 34633658 34633687 -162561745 + AT_rich Low_complexity Low_complexity 1 29 0 3 849 472 209 22 0 chr1 34633764 34633855 -162561577 + B4A SINE B4 3 95 -197 3 849 368 155 51 10 chr1 34633900 34633998 -162561434 + (CATG)n Simple_repeat Simple_repeat 1 102 0 3 849 577 326 17 11 chr1 34634013 34634190 -162561242 + B4A SINE B4 107 284 -8 3 849 707 108 9 0 chr1 34634742 34634853 -162560579 + (GAGAA)n Simple_repeat Simple_repeat 2 113 0 3 849 301 162 14 14 chr1 34634849 34634918 -162560514 + G-rich Low_complexity Low_complexity 1 69 0 3 849 570 182 0 0 chr1 34634918 34635028 -162560404 + A-rich Low_complexity Low_complexity 3 112 0 3 849 575 272 78 117 chr1 34635066 34635180 -162560252 + B4A SINE B4 3 118 -174 3 849 531 66 0 0 chr1 34635180 34635256 -162560176 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 849 575 272 78 117 chr1 34635256 34635424 -162560008 + B4A SINE B4 119 274 -18 3 849 217 192 18 55 chr1 34635433 34635488 -162559944 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 849 560 299 0 63 chr1 34638174 34638349 -162557083 + RSINE1 SINE B4 2 165 0 3 849 843 283 42 42 chr1 34638380 34638620 -162556812 + B4 SINE B4 41 280 -12 3 849 656 145 8 0 chr1 34638622 34638739 -162556693 + CT-rich Low_complexity Low_complexity 1 118 0 3 849 514 228 13 0 chr1 34638738 34638896 -162556536 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 849 416 264 0 11 chr1 34639971 34640059 -162555373 + PB1D10 SINE Alu 1 87 -30 3 849 716 254 0 67 chr1 34640229 34640423 -162555009 - B3A SINE B2 -16 182 2 3 849 293 257 80 99 chr1 34642265 34642416 -162553016 - RMER15 LTR ERVL -427 148 1 3 849 855 98 0 0 chr1 34642666 34642789 -162552643 + (TCC)n Simple_repeat Simple_repeat 2 124 0 3 849 877 53 35 0 chr1 34642800 34642914 -162552518 - B1_Mus2 SINE Alu 0 147 30 3 849 1322 84 15 50 chr1 34642917 34643117 -162552315 - B2_Mm2 SINE B2 -2 193 1 3 849 1309 233 74 31 chr1 34643126 34643476 -162551956 - MTEb LTR MaLR -14 365 1 3 849 201 224 32 65 chr1 34647732 34647794 -162547638 + L2b LINE L2 3316 3375 0 3 849 578 307 12 18 chr1 34647884 34648050 -162547382 + B4A SINE B4 1 165 -127 3 849 671 194 0 16 chr1 34648055 34648238 -162547194 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 849 213 301 0 0 chr1 34648278 34648371 -162547061 + (CA)n Simple_repeat Simple_repeat 1 93 0 3 849 193 175 70 0 chr1 34648900 34648957 -162546475 + (CATG)n Simple_repeat Simple_repeat 3 63 0 3 849 334 271 121 19 chr1 34649007 34649206 -162546226 - B4 SINE B4 -31 261 42 3 849 543 275 11 27 chr1 34649502 34649685 -162545747 + B3A SINE B2 1 180 -18 3 849 1739 163 53 88 chr1 34649826 34649926 -162545506 + ORR1C2 LTR MaLR 3 86 -298 3 849 3810 31 7 4 chr1 34649926 34650377 -162545055 + L1Md_F3 LINE L1 6133 6584 0 3 849 1739 163 53 88 chr1 34650377 34650672 -162544760 + ORR1C2 LTR MaLR 87 384 0 3 849 291 312 13 25 chr1 34650712 34650791 -162544641 - RSINE1 SINE B4 -85 80 3 3 849 629 173 69 23 chr1 34651173 34651303 -162544129 + B1_Mus2 SINE Alu 1 136 -11 3 849 456 183 0 0 chr1 34651303 34651396 -162544036 + GA-rich Low_complexity Low_complexity 1 93 0 3 849 242 321 62 26 chr1 34651589 34651781 -162543651 + L1MC LINE L1 2110 2308 -3838 3 849 859 326 94 38 chr1 34651821 34652265 -162543167 + MT2A LTR ERVL 5 475 -58 3 849 2043 118 6 218 chr1 34652265 34652752 -162542680 - ORR1C2 LTR MaLR 0 384 1 3 849 859 326 94 38 chr1 34652752 34652805 -162542627 + MT2A LTR ERVL 476 530 -3 3 849 258 287 48 5 chr1 34653022 34653150 -162542282 + L1_Mur3 LINE L1 5634 5800 -497 3 849 449 247 11 11 chr1 34653388 34653482 -162541950 + B2_Mm2 SINE B2 1 94 -101 3 849 633 305 10 0 chr1 34653512 34653709 -162541723 + B3 SINE B2 2 200 -16 3 849 360 119 0 0 chr1 34654464 34654523 -162540909 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 849 226 281 47 35 chr1 34654806 34654891 -162540541 + RSINE1 SINE B4 79 164 -1 3 849 790 146 14 27 chr1 34655464 34655612 -162539820 + B1_Mur4 SINE Alu 5 150 0 3 849 1033 274 80 39 chr1 34656406 34656794 -162538638 + MTD LTR MaLR 2 405 -14 3 849 1318 117 7 13 chr1 34656857 34657111 -162538321 - RLTR27 LTR ERVK 0 309 27 3 849 829 159 14 0 chr1 34657330 34657468 -162537964 - B1_Mus1 SINE Alu -8 140 1 3 849 277 232 29 0 chr1 34657571 34657640 -162537792 + L1MA7 LINE L1 6014 6084 -207 3 849 246 62 0 0 chr1 34659093 34659125 -162536307 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 3 849 242 200 41 41 chr1 34659125 34659198 -162536234 + CT-rich Low_complexity Low_complexity 4 76 0 3 849 2845 31 6 171 chr1 34659545 34660012 -162535420 - RLTR10 LTR ERVK 0 390 1 3 849 9197 9 1 0 chr1 34660014 34661008 -162534424 - RLTR10-int LTR ERVK -3 1984 990 3 849 397 238 54 31 chr1 34661090 34661220 -162534212 - RLTR10-int LTR ERVK -5987 1594 1462 3 849 4246 38 10 2 chr1 34661284 34662161 -162533271 - RLTR10-int LTR ERVK -989 998 41 3 849 3183 34 8 35 chr1 34662171 34662572 -162532860 - RLTR10 LTR ERVK 0 390 1 3 849 1072 228 154 15 chr1 34666300 34666625 -162528807 + ORR1D1 LTR MaLR 3 372 -2 3 849 424 341 62 13 chr1 34666867 34667093 -162528339 + RMER15 LTR ERVL 336 572 -3 3 849 181 237 15 119 chr1 34670266 34670333 -162525099 + L2 LINE L2 70 129 -3290 3 849 276 30 0 0 chr1 34670705 34670738 -162524694 + (CAA)n Simple_repeat Simple_repeat 3 35 0 3 849 225 0 0 0 chr1 34673668 34673693 -162521739 + (A)n Simple_repeat Simple_repeat 1 25 0 3 849 266 141 0 27 chr1 34673825 34673898 -162521534 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 3 849 1726 257 166 22 chr1 34675541 34676435 -162518997 + RMER1A Other Other 1 1033 -33 3 849 297 0 0 0 chr1 34676435 34676468 -162518964 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 849 264 322 116 25 chr1 34676512 34676776 -162518656 + Lx7 LINE L1 6949 7236 -237 3 849 287 210 16 25 chr1 34676875 34676922 -162518510 + polypurine Low_complexity Low_complexity 3 49 0 3 849 2065 93 3 124 chr1 34676922 34677276 -162518156 - RLTR10E LTR ERVK 0 311 1 3 849 287 210 16 25 chr1 34677276 34677350 -162518082 + GA-rich Low_complexity Low_complexity 50 123 0 3 849 2225 216 58 40 chr1 34677408 34677506 -162517926 + RMER15 LTR ERVL 1 103 -472 3 849 4153 116 95 148 chr1 34677506 34678487 -162516945 - RLTR13B3 LTR ERVK 0 929 1 3 849 2225 216 58 40 chr1 34678487 34678941 -162516491 + RMER15 LTR ERVL 104 563 -12 3 849 1530 227 106 67 chr1 34678941 34679192 -162516240 - RLTR28B LTR ERVL 0 481 214 3 849 3998 63 0 20 chr1 34679192 34679695 -162515737 + L1Md_F2 LINE L1 6078 6570 -12 3 849 1530 227 106 67 chr1 34679695 34679906 -162515526 - RLTR28B LTR ERVL -268 213 1 3 849 451 282 51 17 chr1 34680042 34680219 -162515213 + L1M1 LINE L1 5474 5656 -647 3 849 883 331 35 0 chr1 34680566 34680823 -162514609 + B4 SINE B4 6 271 -21 3 849 465 76 0 0 chr1 34680827 34680893 -162514539 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 849 191 302 6 0 chr1 34680925 34681084 -162514348 + (CA)n Simple_repeat Simple_repeat 2 161 0 3 849 236 53 26 0 chr1 34681337 34681375 -162514057 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 849 809 283 85 46 chr1 34681375 34681634 -162513798 - B4A SINE B4 -23 269 1 3 849 789 244 55 0 chr1 34681737 34681938 -162513494 - MLT1B LTR MaLR 0 390 179 3 849 2000 142 3 19 chr1 34682694 34683016 -162512416 - ORR1A1 LTR MaLR -29 317 1 3 849 1324 89 39 0 chr1 34683570 34683749 -162511683 + B2_Mm1a SINE B2 4 189 -4 3 849 231 61 0 0 chr1 34684360 34684393 -162511039 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3 849 3286 104 25 36 chr1 34684724 34684857 -162510575 - RLTR28 LTR ERVL -3 521 389 3 849 1626 146 53 83 chr1 34684857 34684960 -162510472 + ORR1A2 LTR MaLR 1 101 -226 3 849 1273 41 0 0 chr1 34684960 34685107 -162510325 + B1_Mm SINE Alu 1 147 0 3 849 1626 146 53 83 chr1 34685107 34685340 -162510092 + ORR1A2 LTR MaLR 102 327 0 3 849 3286 104 25 36 chr1 34685340 34685733 -162509699 - RLTR28 LTR ERVL -136 388 1 3 849 866 262 51 35 chr1 34685738 34685995 -162509437 + MER58B DNA MER1_type 78 338 -3 3 849 348 24 0 0 chr1 34686460 34686501 -162508931 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 849 435 209 29 0 chr1 34686501 34686640 -162508792 + (TGGA)n Simple_repeat Simple_repeat 3 145 0 3 849 287 232 36 12 chr1 34687129 34687212 -162508220 - L1MB8 LINE L1 -17 6167 6083 3 849 567 167 12 11 chr1 34687240 34687361 -162508071 - B3A SINE B2 -77 118 1 3 849 306 285 83 23 chr1 34687366 34687499 -162507933 - L1MA6 LINE L1 -2 6298 6158 3 849 1809 257 109 17 chr1 34687508 34688086 -162507346 - L1MB8 LINE L1 -115 6063 5433 3 849 517 159 11 0 chr1 34688746 34688834 -162506598 - RLTR28B LTR ERVL -306 175 87 3 849 349 329 150 35 chr1 34688847 34689020 -162506412 + RMER15 LTR ERVL 341 533 -42 3 849 2291 140 21 93 chr1 34689014 34689239 -162506193 + RLTR28B LTR ERVL 35 237 -244 3 849 3139 44 23 3 chr1 34689239 34689627 -162505805 - MTA_Mm LTR MaLR 0 396 1 4 849 2291 140 21 93 chr1 34689627 34689883 -162505549 + RLTR28B LTR ERVL 238 481 0 3 849 1437 184 72 48 chr1 34690082 34690413 -162505019 - RLTR28 LTR ERVL 0 524 186 4 849 283 299 22 7 chr1 34693266 34693401 -162502031 + CT-rich Low_complexity Low_complexity 5 141 0 4 849 2651 147 38 2 chr1 34694260 34694703 -162500729 + Lx2 LINE L1 6539 6997 0 4 849 1099 100 0 130 chr1 34694863 34694961 -162500471 + ORR1A2 LTR MaLR 128 211 -116 4 849 565 52 0 0 chr1 34694961 34695038 -162500394 - L1Md_T LINE L1 0 6582 6506 4 849 1099 100 0 130 chr1 34695038 34695146 -162500286 + ORR1A2 LTR MaLR 212 307 -20 4 849 455 148 11 0 chr1 34695152 34695240 -162500192 + (CA)n Simple_repeat Simple_repeat 1 89 0 4 849 819 305 82 29 chr1 34695439 34695817 -162499615 - RMER5 LTR ERV1 -96 438 41 4 849 188 0 74 0 chr1 34695893 34695920 -162499512 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 4 849 221 0 0 33 chr1 34696103 34696133 -162499299 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 849 847 204 132 9 chr1 34696529 34696830 -162498602 + MTD LTR MaLR 2 418 -1 4 849 2250 120 9 9 chr1 34697391 34697720 -162497712 - ORR1A4 LTR MaLR 0 329 1 4 849 646 260 99 12 chr1 34698173 34698344 -162497088 - B4A SINE B4 0 292 107 4 849 1291 95 16 21 chr1 34698424 34698617 -162496815 + B2_Mm1t SINE B2 2 193 0 4 849 814 240 5 70 chr1 34699887 34700096 -162495336 + ID_B1 SINE B4 20 215 -9 4 849 865 101 0 14 chr1 34700096 34700237 -162495195 + (GGAAA)n Simple_repeat Simple_repeat 3 141 0 4 849 767 202 0 11 chr1 34700257 34700437 -162494995 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 849 634 225 12 0 chr1 34700401 34700574 -162494858 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 849 4505 12 2 0 chr1 34701497 34701989 -162493443 - MT2_Mm LTR ERVL 0 493 1 4 849 319 0 0 0 chr1 34701989 34702027 -162493405 - MERVL-int LTR ERVL 0 5485 5448 4 849 403 167 46 35 chr1 34702027 34702114 -162493318 - ORR1A3-int LTR MaLR -1323 640 553 4 849 41492 16 14 0 chr1 34702114 34707401 -162488031 - MERVL-int LTR ERVL -125 5360 1 4 849 4505 12 2 0 chr1 34707401 34707893 -162487539 - MT2_Mm LTR ERVL 0 493 1 4 849 26 30 0 0 chr1 34708121 34708154 -162487278 + AT_rich Low_complexity Low_complexity 1 33 0 4 849 1316 207 139 30 chr1 34708154 34708339 -162487093 - ORR1C2 LTR MaLR 0 384 173 4 849 477 0 0 0 chr1 34708339 34708392 -162487040 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 849 1316 207 139 30 chr1 34708392 34708545 -162486887 - ORR1C2 LTR MaLR -212 172 10 4 849 1182 251 49 66 chr1 34708613 34709044 -162486388 + RMER15 LTR ERVL 6 570 -5 4 849 438 200 26 115 chr1 34709046 34709159 -162486273 - ID_B1 SINE B4 -16 208 106 4 849 446 252 113 93 chr1 34709177 34709424 -162486008 - MTD-int LTR MaLR -2 1256 1005 4 849 497 271 8 52 chr1 34709423 34709543 -162485889 - MTD-int LTR MaLR -837 421 238 4 849 696 220 49 7 chr1 34709543 34709685 -162485747 - B1_Mur1 SINE Alu -1 148 1 4 849 605 263 62 59 chr1 34709685 34709941 -162485491 - MTD-int LTR MaLR -1002 256 1 4 849 1194 232 152 8 chr1 34709948 34710283 -162485149 - MTD LTR MaLR -14 405 20 4 849 237 300 75 6 chr1 34710420 34710581 -162484851 + L1M4 LINE L1 4429 4600 -1543 4 849 437 301 70 52 chr1 34710612 34710882 -162484550 + L1M4 LINE L1 4788 5062 -1084 4 849 630 290 58 32 chr1 34710945 34711134 -162484298 + B4A SINE B4 1 194 -98 4 849 351 113 0 0 chr1 34711366 34711419 -162484013 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 849 1081 304 35 107 chr1 34711647 34712048 -162483384 + MTE2b LTR MaLR 1 372 -7 4 849 578 297 56 5 chr1 34712049 34712245 -162483187 + ERVL-B4-int LTR ERVL 830 1035 -4679 4 849 332 279 81 38 chr1 34712245 34712454 -162482978 + L1M4 LINE L1 4992 5209 -937 4 849 279 329 90 0 chr1 34712546 34712713 -162482719 + L1M4 LINE L1 5296 5477 -701 4 849 474 170 0 0 chr1 34712713 34712807 -162482625 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 849 1326 66 0 0 chr1 34712810 34713022 -162482410 + (GGAAA)n Simple_repeat Simple_repeat 1 212 0 4 849 301 157 0 0 chr1 34713025 34713076 -162482356 + L1M4 LINE L1 5484 5534 -646 4 849 733 218 43 35 chr1 34713152 34713363 -162482069 - MTEa LTR MaLR -3 376 168 4 849 239 111 43 43 chr1 34713380 34713427 -162482005 - MTEb LTR MaLR -120 259 213 4 849 239 111 43 43 chr1 34713456 34713503 -162481929 - MTEb LTR MaLR -120 259 213 4 849 239 111 43 43 chr1 34713532 34713579 -162481853 - MTEb LTR MaLR -120 259 213 4 849 230 174 21 42 chr1 34713570 34713618 -162481814 - MTEb LTR MaLR -120 259 213 4 849 252 130 21 42 chr1 34713609 34713657 -162481775 - MTEb LTR MaLR -120 259 213 4 849 245 152 21 42 chr1 34713724 34713772 -162481660 - MTEb LTR MaLR -120 259 213 4 849 616 290 187 4 chr1 34713833 34714058 -162481374 - MTE2b LTR MaLR -113 266 1 4 849 217 264 209 31 chr1 34714068 34714197 -162481235 - MIRb SINE MIR -29 239 88 4 849 405 0 0 0 chr1 34714726 34714771 -162480661 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 849 3150 58 27 12 chr1 34714821 34715222 -162480210 + MTB_Mm LTR MaLR 1 407 0 4 849 281 191 71 0 chr1 34715240 34715324 -162480108 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 849 891 231 103 57 chr1 34715416 34715678 -162479754 + MT2A LTR ERVL 1 274 -259 4 849 1952 98 0 196 chr1 34715748 34716156 -162479276 - ORR1A4 LTR MaLR 0 329 2 4 849 4495 168 64 125 chr1 34716156 34717581 -162477851 - ORR1A4-int LTR MaLR -6 1957 1 4 849 1473 156 134 10 chr1 34717581 34717872 -162477560 - ORR1A4 LTR MaLR 0 327 1 4 849 800 253 252 4 chr1 34717872 34718150 -162477282 - MTD LTR MaLR -65 354 8 4 849 740 293 51 2 chr1 34718156 34718387 -162477045 + MT2A LTR ERVL 269 601 0 4 849 1110 266 80 35 chr1 34718482 34718821 -162476611 + ORR1E LTR MaLR 6 359 0 4 849 260 296 114 0 chr1 34719013 34719101 -162476331 - PB1 SINE Alu -23 104 7 4 849 575 167 287 0 chr1 34719872 34720022 -162475410 - MTD LTR MaLR 0 419 227 4 849 302 269 0 0 chr1 34720129 34720196 -162475236 - RMER15 LTR ERVL -87 488 422 4 849 259 213 18 18 chr1 34720220 34720330 -162475102 + (CAGAGA)n Simple_repeat Simple_repeat 3 112 0 4 849 306 180 0 0 chr1 34720528 34720589 -162474843 + (GGATG)n Simple_repeat Simple_repeat 4 64 0 4 849 183 267 200 0 chr1 34721573 34721648 -162473784 + MIRc SINE MIR 58 147 -121 4 849 279 0 0 0 chr1 34722149 34722180 -162473252 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 849 1525 254 46 22 chr1 34723875 34724241 -162471191 - MTE2b LTR MaLR -3 376 2 4 849 504 344 66 6 chr1 34725025 34725206 -162470226 + B3A SINE B2 3 194 -4 4 849 183 42 0 0 chr1 34725433 34725457 -162469975 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 849 203 262 0 0 chr1 34725697 34725739 -162469693 + polypyrimidine Low_complexity Low_complexity 3 44 0 4 849 580 152 18 26 chr1 34726194 34726330 -162469102 - MTD-int LTR MaLR -970 128 1 4 849 1196 246 166 0 chr1 34726340 34726677 -162468755 - MTD LTR MaLR -26 393 1 4 849 1062 252 55 8 chr1 34726684 34726920 -162468512 + B4 SINE B4 44 290 -2 4 849 1166 252 56 22 chr1 34727646 34727914 -162467518 + B4A SINE B4 14 290 -2 4 849 652 206 7 49 chr1 34727936 34728079 -162467353 - B1_Mur1 SINE Alu -1 148 12 4 849 192 158 0 0 chr1 34728457 34728495 -162466937 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 849 690 202 65 41 chr1 34729073 34729243 -162466189 - RMER17C-int LTR ERVK -3064 174 1 4 849 910 218 71 56 chr1 34729243 34729481 -162465951 - RMER17B LTR ERVK -516 442 186 4 849 720 0 0 0 chr1 34729481 34729561 -162465871 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 849 910 183 76 40 chr1 34729561 34729680 -162465752 - RMER17B LTR ERVK -652 306 184 4 849 454 247 6 6 chr1 34729712 34729891 -162465541 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 849 538 226 0 17 chr1 34729928 34730108 -162465324 + (CATA)n Simple_repeat Simple_repeat 4 180 0 4 849 897 269 5 14 chr1 34730125 34730336 -162465096 - MTE2b LTR MaLR -170 209 1 4 849 374 274 50 77 chr1 34730435 34730617 -162464815 - RLTR11B LTR ERVK -31 422 246 4 849 198 0 0 0 chr1 34730658 34730680 -162464752 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 4 849 228 130 0 0 chr1 34730732 34730778 -162464654 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 849 804 231 70 53 chr1 34730780 34731064 -162464368 - RLTR11B LTR ERVK -164 289 1 4 849 243 286 93 51 chr1 34732665 34732783 -162462649 + MER5A DNA MER1_type 40 162 -27 4 849 492 282 51 22 chr1 34733128 34733306 -162462126 + RMER15 LTR ERVL 348 530 -45 4 849 240 100 0 0 chr1 34733931 34733971 -162461461 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 106 533 284 39 100 chr1 34734065 34734374 -162461058 + B4A SINE B4 1 290 -2 4 850 230 0 33 0 chr1 34735903 34735933 -162459499 + (TGGGGG)n Simple_repeat Simple_repeat 2 32 0 4 850 187 299 9 85 chr1 34736155 34736261 -162459171 + MIRb SINE MIR 60 157 -111 4 850 258 341 24 18 chr1 34737399 34737654 -162457778 + (CATATA)n Simple_repeat Simple_repeat 1 256 0 4 850 319 335 5 38 chr1 34737560 34737746 -162457686 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 850 398 333 9 29 chr1 34738087 34738192 -162457240 - RSINE1 SINE B4 -15 150 48 4 850 264 301 54 3 chr1 34738312 34738491 -162456941 - ERVL-B4-int LTR ERVL -3444 2223 2035 4 850 277 164 109 0 chr1 34739099 34739154 -162456278 - L2a LINE L2 -5 3421 3361 4 850 183 80 0 0 chr1 34739205 34739230 -162456202 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 850 746 332 60 0 chr1 34739237 34739469 -162455963 - B4A SINE B4 -3 289 44 4 850 330 296 0 0 chr1 34739536 34739607 -162455825 - RSINE1 SINE B4 0 165 95 4 850 326 203 0 30 chr1 34740219 34740285 -162455147 + ID4 SINE ID 12 75 -8 4 850 245 316 0 50 chr1 34740470 34740550 -162454882 + RMER30 DNA MER1_type 127 202 0 4 850 462 277 14 0 chr1 34742205 34742346 -162453086 + L1MB8 LINE L1 4435 4577 -1563 4 850 225 260 78 16 chr1 34742461 34742590 -162452842 + L1MB8 LINE L1 4574 4710 -1430 4 850 379 348 103 21 chr1 34742578 34743104 -162452328 + L1MB8 LINE L1 5032 5600 -584 4 850 541 308 98 26 chr1 34743419 34743818 -162451614 + L1MB8 LINE L1 5740 6166 -12 4 850 828 260 20 60 chr1 34743841 34744091 -162451341 + B4 SINE B4 2 241 -51 4 850 678 109 0 0 chr1 34744189 34744290 -162451142 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 4 850 989 138 0 26 chr1 34745826 34745982 -162449450 + URR1A DNA MER1_type 75 226 0 4 850 2205 140 74 22 chr1 34746153 34746518 -162448914 - ORR1C2 LTR MaLR 0 384 1 4 850 324 102 0 0 chr1 34747176 34747225 -162448207 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 850 2340 125 39 6 chr1 34747525 34747880 -162447552 - ORR1B2 LTR MaLR 0 367 1 4 850 784 168 0 64 chr1 34748313 34748453 -162446979 + B1_Mur2 SINE Alu 1 131 -18 4 850 226 214 0 0 chr1 34748460 34748502 -162446930 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 4 850 1518 276 84 93 chr1 34749709 34750774 -162444658 - L1MC LINE L1 -1762 4384 3310 4 850 615 284 18 24 chr1 34750810 34750976 -162444456 - RSINE1 SINE B4 0 165 1 4 850 328 148 16 16 chr1 34751138 34751200 -162444232 - L1MD2 LINE L1 -6452 95 34 4 850 1738 201 184 73 chr1 34751267 34751745 -162443687 - MT2A LTR ERVL 0 533 3 4 850 284 328 35 26 chr1 34751873 34751989 -162443443 - ORR1E LTR MaLR -166 193 77 4 850 392 37 19 0 chr1 34752061 34752115 -162443317 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 850 937 217 39 15 chr1 34752224 34752430 -162443002 - RMER15 LTR ERVL -1 574 364 5 850 234 0 0 0 chr1 34752781 34752807 -162442625 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 850 911 242 179 13 chr1 34752814 34753115 -162442317 - MTD LTR MaLR -66 353 3 5 850 231 189 0 0 chr1 34753161 34753214 -162442218 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 850 254 351 0 81 chr1 34754092 34754216 -162441216 - B4A SINE B4 -80 212 99 5 850 219 272 22 100 chr1 34754254 34754276 -162441156 - B4A SINE B4 -202 90 72 5 850 2253 99 45 0 chr1 34754276 34754589 -162440843 + ORR1A2 LTR MaLR 1 327 0 5 850 10690 130 70 14 chr1 34754589 34756447 -162438985 + ORR1A2-int LTR MaLR 1 1963 0 5 850 2200 92 76 0 chr1 34756447 34756751 -162438681 + ORR1A2 LTR MaLR 1 327 0 5 850 219 272 22 100 chr1 34756751 34756816 -162438616 - B4A SINE B4 -221 71 10 5 850 288 0 0 0 chr1 34756887 34756919 -162438513 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 850 193 248 95 76 chr1 34757220 34757325 -162438107 + L2b LINE L2 3230 3336 -39 5 850 714 243 75 75 chr1 34758377 34758604 -162436828 + B4A SINE B4 1 227 -65 5 850 234 315 0 0 chr1 34758691 34758745 -162436687 - ID4_ SINE ID 0 83 30 5 850 334 250 83 0 chr1 34758775 34758847 -162436585 - PB1D10 SINE Alu -7 110 33 5 850 487 283 105 56 chr1 34758930 34759296 -162436136 - L1M5 LINE L1 -1221 4922 4539 5 850 816 283 97 0 chr1 34759807 34760054 -162435378 + B4A SINE B4 2 272 -20 5 850 348 281 48 89 chr1 34760358 34760526 -162434906 - MLT1A LTR MaLR -203 171 11 5 850 275 318 23 23 chr1 34760550 34760637 -162434795 - MER58A DNA MER1_type -128 96 10 5 850 499 202 34 34 chr1 34760928 34761046 -162434386 + RSINE1 SINE B4 3 120 -45 5 850 189 0 0 0 chr1 34761191 34761212 -162434220 + (TTAG)n Simple_repeat Simple_repeat 3 23 0 5 850 811 213 14 0 chr1 34761220 34761361 -162434071 - B1_Mur3 SINE Alu -6 143 1 5 850 2074 130 114 9 chr1 34761486 34761828 -162433604 - ORR1C1 LTR MaLR 0 378 1 5 850 1179 237 120 0 chr1 34762858 34763141 -162432291 - MTE2b LTR MaLR -38 341 25 5 850 253 312 129 73 chr1 34763368 34763600 -162431832 + MLT1E LTR MaLR 110 354 -299 5 850 3129 68 10 0 chr1 34763878 34764274 -162431158 - MTB LTR MaLR 0 400 1 5 850 351 206 60 76 chr1 34764314 34764440 -162430992 - RMER12 LTR ERVK -107 1215 995 5 850 369 0 0 0 chr1 34764440 34764481 -162430951 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 850 1693 234 37 185 chr1 34764481 34765428 -162430004 - RMER12 LTR ERVK -515 807 1 5 850 852 246 45 25 chr1 34765428 34765627 -162429805 + MTE2b LTR MaLR 12 214 -165 5 850 252 262 0 0 chr1 34765637 34765740 -162429692 + C-rich Low_complexity Low_complexity 4 106 0 5 850 375 271 106 23 chr1 34765749 34765881 -162429551 - B4A SINE B4 -148 144 2 5 850 1171 77 0 0 chr1 34766383 34766526 -162428906 + B1_Mus1 SINE Alu 1 143 -5 5 850 234 0 0 0 chr1 34766540 34766566 -162428866 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 850 2345 148 81 0 chr1 34766590 34766974 -162428458 - MTD LTR MaLR -2 417 3 5 850 289 258 0 70 chr1 34767969 34768040 -162427392 + ID4_ SINE ID 2 67 -16 5 850 339 369 78 23 chr1 34768319 34768577 -162426855 + L1MC4a LINE L1 5708 5979 -1903 5 850 405 271 37 16 chr1 34768845 34769008 -162426424 + L1MDa LINE L1 1484 1677 -4956 5 850 459 0 0 0 chr1 34769092 34769143 -162426289 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 850 231 188 0 0 chr1 34769639 34769687 -162425745 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 850 938 289 66 0 chr1 34769776 34770032 -162425400 - B4 SINE B4 -19 273 1 5 850 482 263 119 9 chr1 34770208 34770478 -162424954 - L1MD LINE L1 -936 5423 5120 5 850 520 244 108 11 chr1 34770532 34770718 -162424714 + B4A SINE B4 1 204 -88 5 850 394 233 0 0 chr1 34770691 34770764 -162424668 + PB1D10 SINE Alu 33 105 -12 5 850 524 294 201 24 chr1 34770797 34771168 -162424264 - MLT1D LTR MaLR -4 501 67 5 850 1549 188 72 13 chr1 34771176 34771494 -162423938 - RLTR11B LTR ERVK 0 453 117 5 850 485 281 126 0 chr1 34771532 34771667 -162423765 + RSINE1 SINE B4 3 154 -11 5 850 359 314 22 14 chr1 34771789 34771928 -162423504 + L1M5 LINE L1 5642 5781 -383 5 850 833 282 55 5 chr1 34772308 34772525 -162422907 + B4A SINE B4 7 234 -58 5 850 449 261 75 84 chr1 34772507 34772528 -162422904 + B4 SINE B4 82 122 -170 5 850 585 156 36 18 chr1 34772528 34772639 -162422793 + B1_Mm SINE Alu 15 127 -20 5 850 449 261 75 84 chr1 34772639 34772720 -162422712 + B4 SINE B4 123 292 0 5 850 297 0 0 0 chr1 34772784 34772817 -162422615 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 850 225 237 181 19 chr1 34773610 34773765 -162421667 + L1M5 LINE L1 2746 2925 -3221 5 850 703 161 15 23 chr1 34774536 34774799 -162420633 + (TG)n Simple_repeat Simple_repeat 1 260 0 5 850 387 259 0 61 chr1 34774824 34774939 -162420493 - B4A SINE B4 0 292 185 5 850 691 329 79 0 chr1 34775025 34775277 -162420155 + B4 SINE B4 1 272 -20 5 850 345 47 0 0 chr1 34775281 34775324 -162420108 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 850 542 307 85 43 chr1 34775930 34776141 -162419291 + B4 SINE B4 55 274 -18 5 850 180 0 0 0 chr1 34776181 34776201 -162419231 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 850 736 221 27 14 chr1 34776800 34776947 -162418485 + B1_Mur1 SINE Alu 1 149 0 5 850 545 262 180 16 chr1 34776955 34777149 -162418283 + B4 SINE B4 11 236 -56 5 850 201 289 87 22 chr1 34777255 34777347 -162418085 + L4 LINE RTE 1775 1872 -157 5 850 395 259 8 4 chr1 34777577 34777820 -162417612 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 850 255 266 6 11 chr1 34777855 34778030 -162417402 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 850 551 298 46 88 chr1 34778078 34778366 -162417066 - B4A SINE B4 -1 291 2 5 850 245 307 67 11 chr1 34782112 34782201 -162413231 - RSINE1 SINE B4 -60 105 12 5 850 1006 221 5 14 chr1 34782216 34782423 -162413009 - ID_B1 SINE B4 -19 205 1 5 850 252 0 0 0 chr1 34782541 34782569 -162412863 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 850 737 265 11 5 chr1 34782853 34783043 -162412389 + B3A SINE B2 2 192 -6 5 850 1038 101 0 39 chr1 34783115 34783254 -162412178 + B1_Mur4 SINE Alu 3 140 -10 5 850 293 0 27 0 chr1 34783254 34783291 -162412141 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 850 1038 101 0 39 chr1 34783291 34783305 -162412127 + B1_Mur4 SINE Alu 141 150 0 5 850 477 318 126 0 chr1 34783641 34783864 -162411568 - L1MD2 LINE L1 -454 6296 6046 5 850 291 279 73 52 chr1 34783912 34784048 -162411384 + B4 SINE B4 2 140 -152 5 850 719 231 134 0 chr1 34784315 34784531 -162410901 - L1M2 LINE L1 -500 5800 5556 5 850 300 250 15 0 chr1 34784541 34784609 -162410823 - L1MD2 LINE L1 -1164 5373 5305 5 850 695 309 229 14 chr1 34784646 34785563 -162409869 - L1MD2 LINE L1 -1322 5215 4101 5 850 474 116 0 11 chr1 34785564 34785651 -162409781 + ORR1C2 LTR MaLR 36 121 -263 5 850 353 347 34 24 chr1 34785847 34786054 -162409378 - L1MD2 LINE L1 -4288 2345 2137 5 850 266 179 11 67 chr1 34786114 34786204 -162409228 + (CATAT)n Simple_repeat Simple_repeat 4 88 0 5 850 351 0 0 0 chr1 34786424 34786463 -162408969 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 850 475 234 110 24 chr1 34786467 34786594 -162408838 - B3A SINE B2 -60 138 1 5 850 225 217 71 79 chr1 34786652 34786792 -162408640 - Lx8 LINE L1 0 7473 7335 5 850 234 193 0 0 chr1 34786794 34786851 -162408581 + CT-rich Low_complexity Low_complexity 3 59 0 5 850 216 0 0 0 chr1 34786961 34786985 -162408447 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 5 850 723 47 80 0 chr1 34786988 34787138 -162408294 + (TC)n Simple_repeat Simple_repeat 1 162 0 5 850 3450 270 75 8 chr1 34787145 34788079 -162407353 - Lx8 LINE L1 -247 7226 6230 5 850 958 294 96 8 chr1 34788371 34788632 -162406800 + B4 SINE B4 3 286 -6 5 850 475 255 102 51 chr1 34789438 34789595 -162405837 + B4 SINE B4 1 165 -127 5 850 889 279 68 51 chr1 34789696 34790149 -162405283 + L1MA7 LINE L1 5600 6060 -231 5 850 251 274 7 8 chr1 34790229 34790346 -162405086 - RSINE1 SINE B4 -7 158 1 5 850 319 189 76 14 chr1 34790355 34790475 -162404957 + L1MA7 LINE L1 6117 6251 -61 5 850 314 204 174 0 chr1 34790479 34790577 -162404855 + PB1D7 SINE Alu 3 117 -3 5 850 1122 122 0 0 chr1 34790743 34790923 -162404509 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 850 764 232 7 0 chr1 34790924 34791079 -162404353 - B3A SINE B2 -42 156 1 5 850 22 0 0 0 chr1 34791237 34791259 -162404173 + AT_rich Low_complexity Low_complexity 1 22 0 5 850 8390 38 6 1 chr1 34791375 34792643 -162402789 - L1Md_F2 LINE L1 0 6582 5310 5 850 18412 68 0 0 chr1 34792641 34795010 -162400422 + L1Md_F2 LINE L1 2929 5298 -585 5 850 248 293 86 57 chr1 34795118 34795223 -162400209 - MER82 DNA MER2_type -533 120 13 5 850 367 220 378 5 chr1 34795542 34795743 -162399689 + B4A SINE B4 1 276 -16 5 850 391 179 0 19 chr1 34795801 34795909 -162399523 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 850 372 145 16 0 chr1 34795909 34795971 -162399461 + HAL1-3A_ME LINE L1 1972 2034 -824 5 850 192 277 29 58 chr1 34796069 34796138 -162399294 - MIR SINE MIR -182 80 14 5 850 1146 177 125 62 chr1 34796419 34796756 -162398676 - ORR1C2 LTR MaLR -22 362 5 5 850 410 227 51 10 chr1 34796964 34797062 -162398370 - MTB_Mm LTR MaLR -3 416 315 5 850 829 97 39 12 chr1 34797061 34797206 -162398226 - MTB_Mm LTR MaLR -253 168 3 5 850 231 308 31 71 chr1 34797206 34797263 -162398169 - LTR73 LTR ERV1 -80 492 440 5 850 342 0 0 0 chr1 34797640 34797678 -162397754 + (A)n Simple_repeat Simple_repeat 1 38 0 5 850 214 304 41 52 chr1 34798603 34798700 -162396732 + MIRm SINE MIR 27 122 -154 5 850 432 0 0 0 chr1 34798895 34798943 -162396489 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 850 546 235 0 0 chr1 34798947 34799096 -162396336 + (TA)n Simple_repeat Simple_repeat 2 150 0 5 850 310 28 0 0 chr1 34799096 34799132 -162396300 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 850 906 212 16 32 chr1 34800246 34800436 -162394996 + B3A SINE B2 1 187 -11 5 850 258 32 0 0 chr1 34800595 34800626 -162394806 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 850 288 212 93 52 chr1 34800629 34800847 -162394585 - Lx7 LINE L1 0 7696 7360 6 850 360 0 0 0 chr1 34800847 34800887 -162394545 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 850 288 228 161 48 chr1 34800887 34800911 -162394521 - Lx7 LINE L1 -229 7467 7441 6 850 1585 200 43 10 chr1 34800889 34801266 -162394166 - Lx8 LINE L1 -1558 5915 5534 6 850 826 302 70 67 chr1 34801308 34801638 -162393794 - MTEa LTR MaLR -8 371 41 6 850 690 262 73 45 chr1 34803529 34803749 -162391683 + B4 SINE B4 4 229 -63 6 850 975 188 0 11 chr1 34804230 34804413 -162391019 - B3 SINE B2 -6 210 30 6 850 543 43 0 0 chr1 34804663 34804733 -162390699 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 850 884 280 63 30 chr1 34804768 34805037 -162390395 - B4 SINE B4 -13 279 2 6 850 546 328 63 26 chr1 34805107 34805486 -162389946 + L1M2 LINE L1 2316 2708 -3435 6 850 25 102 0 0 chr1 34807392 34807480 -162387952 + GC_rich Low_complexity Low_complexity 1 88 0 6 850 22 35 0 0 chr1 34807530 34807559 -162387873 + GC_rich Low_complexity Low_complexity 1 29 0 6 850 585 0 0 0 chr1 34808883 34808948 -162386484 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 850 258 340 10 21 chr1 34810634 34810730 -162384702 + MER105 DNA DNA 110 204 0 6 850 390 21 0 0 chr1 34811035 34811082 -162384350 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 850 231 61 0 0 chr1 34811083 34811116 -162384316 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 850 405 317 139 47 chr1 34811499 34811837 -162383595 - ORR1D2 LTR MaLR 0 370 2 6 850 302 311 21 32 chr1 34812051 34812144 -162383288 + ID_B1 SINE B4 1 92 -132 6 850 189 0 0 0 chr1 34812199 34812220 -162383212 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 6 850 289 0 0 47 chr1 34812332 34812375 -162383057 + (ATTAG)n Simple_repeat Simple_repeat 5 45 0 6 850 211 254 0 45 chr1 34812402 34812468 -162382964 + C-rich Low_complexity Low_complexity 3 65 0 6 850 387 0 0 0 chr1 34812782 34812825 -162382607 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 850 375 23 0 0 chr1 34813465 34813509 -162381923 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 850 289 244 32 48 chr1 34813528 34813653 -162381779 - BC1_Mm scRNA scRNA -23 129 7 6 850 230 214 0 67 chr1 34813604 34813664 -162381768 - B4A SINE B4 -236 56 1 6 850 680 45 0 0 chr1 34813915 34814004 -162381428 + L1_Mus2 LINE L1 6477 6565 -1 6 850 753 279 91 109 chr1 34814072 34814402 -162381030 + ORR1E LTR MaLR 20 343 -16 6 850 342 303 137 27 chr1 34815114 34815260 -162380172 - B4A SINE B4 0 292 131 6 850 204 156 0 22 chr1 34815690 34815736 -162379696 + (TTTAA)n Simple_repeat Simple_repeat 5 49 0 6 850 328 308 9 36 chr1 34815803 34815914 -162379518 + PB1D10 SINE Alu 9 116 -1 6 850 461 304 72 0 chr1 34816422 34816547 -162378885 + B4A SINE B4 20 153 -139 6 850 2709 133 15 0 chr1 34816541 34816948 -162378484 - MTC LTR MaLR -8 413 1 6 850 493 285 27 34 chr1 34816949 34817098 -162378334 + B4A SINE B4 145 292 0 6 850 2246 302 15 19 chr1 34817867 34818596 -162376836 - Lx8 LINE L1 -314 7159 6434 6 850 226 232 253 66 chr1 34818604 34818625 -162376807 - Lx7 LINE L1 -1360 6336 6319 6 850 2105 144 43 61 chr1 34818625 34819016 -162376416 - ORR1C2 LTR MaLR 0 384 1 6 850 226 232 253 66 chr1 34819016 34819130 -162376302 - Lx7 LINE L1 -1378 6318 6169 6 850 345 47 0 0 chr1 34819130 34819173 -162376259 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 850 226 232 253 66 chr1 34819173 34819202 -162376230 - Lx7 LINE L1 -1528 6168 6140 6 850 1106 239 50 0 chr1 34819308 34819568 -162375864 - B4A SINE B4 -19 273 1 6 850 328 345 44 0 chr1 34819577 34819690 -162375742 - L1MCa LINE L1 -2996 3325 3208 6 850 2768 198 119 29 chr1 34819751 34820416 -162375016 + RMER19A LTR ERVK 1 725 -12 6 850 333 344 84 58 chr1 34820462 34820653 -162374779 + B3A SINE B2 3 198 0 6 850 572 244 0 0 chr1 34820660 34820779 -162374653 + Lx7 LINE L1 7190 7308 -388 6 850 297 0 0 0 chr1 34820794 34820827 -162374605 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 850 305 265 96 19 chr1 34820885 34820989 -162374443 - L1MCa LINE L1 -5249 1259 1148 6 850 366 215 0 0 chr1 34820991 34821121 -162374311 + GA-rich Low_complexity Low_complexity 1 130 0 6 850 24 0 0 0 chr1 34821202 34821226 -162374206 + AT_rich Low_complexity Low_complexity 1 24 0 6 850 302 294 70 42 chr1 34821267 34821409 -162374023 + B1F1 SINE Alu 2 147 -2 6 850 290 286 0 0 chr1 34821409 34821479 -162373953 + ID2 SINE ID 8 77 -6 6 850 408 265 125 93 chr1 34821948 34822164 -162373268 - RMER12 LTR ERVK 0 1322 1100 6 850 5569 102 19 10 chr1 34822318 34823139 -162372293 - RLTR22_Mur LTR ERVK -1018 830 2 6 850 842 237 230 30 chr1 34823146 34823416 -162372016 - MTE2b LTR MaLR -54 325 2 6 850 562 299 155 109 chr1 34823516 34824000 -162371432 - MER76 LTR ERVL -88 603 98 6 850 1446 215 94 15 chr1 34824250 34824590 -162370842 - ORR1D1 LTR MaLR -5 369 3 6 850 381 286 91 67 chr1 34824873 34825142 -162370290 - RMER12 LTR ERVK 0 1322 995 6 850 30 45 0 0 chr1 34825146 34825190 -162370242 + AT_rich Low_complexity Low_complexity 1 44 0 6 850 253 241 119 9 chr1 34825306 34825415 -162370017 + RMER12 LTR ERVK 736 856 -466 6 850 378 0 0 0 chr1 34825543 34825585 -162369847 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 850 668 322 82 22 chr1 34826553 34826823 -162368609 - B4A SINE B4 0 292 7 6 850 240 347 94 56 chr1 34826981 34827161 -162368271 + MIRm SINE MIR 5 191 -85 6 850 1763 282 115 58 chr1 34828180 34828393 -162367039 - Lx8 LINE L1 -20 7453 7240 6 850 609 83 321 27 chr1 34828393 34828505 -162366927 + B1_Mm SINE Alu 3 147 0 6 850 1763 282 115 58 chr1 34828505 34829064 -162366368 - Lx8 LINE L1 -234 7239 6637 6 850 882 287 32 0 chr1 34829086 34829302 -162366130 - Lx8 LINE L1 -892 6581 6359 6 850 559 296 0 43 chr1 34829649 34829790 -162365642 + RSINE1 SINE B4 21 155 -10 6 850 774 222 71 0 chr1 34829858 34830056 -162365376 + Lx8 LINE L1 6671 6882 -591 6 850 395 283 68 7 chr1 34830365 34830511 -162364921 - MER2 DNA MER2_type -41 304 150 6 850 342 182 71 0 chr1 34830536 34830635 -162364797 - Lx9 LINE L1 -6 7638 7533 6 850 614 117 0 68 chr1 34830655 34830847 -162364585 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 850 529 27 27 0 chr1 34830902 34830977 -162364455 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 850 5941 193 63 14 chr1 34830982 34832095 -162363337 - Lx9 LINE L1 -179 7465 6336 6 850 492 99 0 0 chr1 34832095 34832166 -162363266 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 850 5941 193 63 14 chr1 34832166 34832316 -162363116 - Lx9 LINE L1 -1309 6335 6141 6 850 277 320 13 0 chr1 34833130 34833208 -162362224 + ID2 SINE ID 1 79 -4 6 850 516 318 63 72 chr1 34833269 34833391 -162362041 - L1MEg LINE L1 -4318 1766 1649 6 850 1124 166 80 0 chr1 34833391 34833578 -162361854 - B3 SINE B2 -10 206 5 6 850 516 318 63 72 chr1 34833578 34833818 -162361614 - L1MEg LINE L1 -4436 1648 1408 6 850 330 320 80 58 chr1 34833830 34834153 -162361279 - ORR1E LTR MaLR 0 359 20 6 850 230 273 92 54 chr1 34834181 34834377 -162361055 - L1MEg LINE L1 -4763 1321 1117 6 850 4636 121 51 22 chr1 34834377 34835163 -162360269 + RMER17D2 LTR ERVK 1 809 0 6 850 230 273 92 54 chr1 34835163 34835206 -162360226 - L1MEg LINE L1 -4968 1116 1073 6 850 1052 230 54 129 chr1 34835263 34835673 -162359759 - MTE2a LTR MaLR 0 379 1 6 850 395 299 199 28 chr1 34835818 34835959 -162359473 - RSINE1 SINE B4 0 165 1 6 850 1056 129 0 0 chr1 34836116 34836263 -162359169 + B1_Mus2 SINE Alu 1 147 0 6 850 192 77 0 0 chr1 34836317 34836343 -162359089 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 850 447 255 108 25 chr1 34836349 34836506 -162358926 + L1MA4A LINE L1 5449 5618 -685 6 850 1920 280 25 13 chr1 34836506 34837034 -162358398 - RMER5 LTR ERV1 0 534 1 6 850 504 339 91 9 chr1 34837034 34837353 -162358079 + L1MA4A LINE L1 5615 5959 -344 6 850 342 365 25 43 chr1 34837581 34837744 -162357688 - L1MEg LINE L1 -5466 618 459 6 850 2364 244 85 53 chr1 34838002 34838789 -162356643 - RLTR40 LTR ERVK -5 812 1 6 850 815 246 18 0 chr1 34838882 34839053 -162356379 - ID_B1 SINE B4 -8 216 43 6 850 1159 132 39 0 chr1 34839083 34839265 -162356167 - B2_Mm2 SINE B2 -6 189 1 6 850 472 225 12 75 chr1 34839330 34839477 -162355955 - B1_Mur1 SINE Alu -2 147 21 6 850 249 33 0 0 chr1 34839715 34839745 -162355687 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 850 203 256 0 0 chr1 34839745 34839784 -162355648 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 850 183 80 0 0 chr1 34839805 34839830 -162355602 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 6 850 520 285 134 47 chr1 34839830 34840083 -162355349 - B4A SINE B4 -16 276 8 6 850 200 307 13 26 chr1 34840534 34840611 -162354821 - L2a LINE L2 -19 3407 3332 6 850 476 32 0 16 chr1 34840659 34840722 -162354710 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 850 295 277 158 0 chr1 34840960 34841061 -162354371 - PB1D10 SINE Alu 0 117 1 6 850 201 333 24 12 chr1 34841103 34841188 -162354244 - L2b LINE L2 -1 3374 3289 6 850 717 279 67 24 chr1 34841516 34841725 -162353707 - B4A SINE B4 -72 220 3 6 850 716 301 19 71 chr1 34842560 34842868 -162352564 - B4A SINE B4 0 292 1 6 850 254 208 0 19 chr1 34842917 34842971 -162352461 - PB1D7 SINE Alu -66 54 2 6 850 241 255 62 21 chr1 34843042 34843138 -162352294 - L1MEb LINE L1 -5408 662 563 6 850 634 269 128 9 chr1 34843175 34843393 -162352039 + B4A SINE B4 49 292 0 6 850 687 244 144 0 chr1 34844029 34844189 -162351243 - ID_B1 SINE B4 -1 223 41 6 850 264 236 11 67 chr1 34844631 34844732 -162350700 + L1MA4A LINE L1 5852 5947 -353 6 850 309 253 20 31 chr1 34844761 34844859 -162350573 + GA-rich Low_complexity Low_complexity 4 100 0 6 850 345 272 107 0 chr1 34844928 34845031 -162350401 + B1F1 SINE Alu 22 135 -14 6 850 324 0 0 0 chr1 34845161 34845197 -162350235 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 850 620 249 170 70 chr1 34845306 34845503 -162349929 + B4 SINE B4 41 270 -22 6 850 243 0 0 0 chr1 34845503 34845530 -162349902 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 6 850 620 249 170 70 chr1 34845530 34845561 -162349871 + B4 SINE B4 271 292 0 6 850 529 253 72 62 chr1 34846067 34846261 -162349171 - B3A SINE B2 0 198 3 6 850 561 299 75 118 chr1 34846391 34846881 -162348551 - RLTR12B LTR ERVK -34 494 26 7 850 701 284 37 6 chr1 34846880 34847043 -162348389 - B4A SINE B4 -123 169 2 7 850 418 229 218 16 chr1 34847325 34847449 -162347983 + B3A SINE B2 24 172 -26 7 850 192 40 0 0 chr1 34847453 34847478 -162347954 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 850 350 322 123 11 chr1 34847478 34847834 -162347598 - L1MB4 LINE L1 -150 6030 5635 7 850 717 286 131 28 chr1 34847835 34848158 -162347274 - MT2A LTR ERVL 0 601 156 7 850 306 259 174 9 chr1 34848162 34848271 -162347161 - MTE2a LTR MaLR -246 133 7 7 850 756 229 186 59 chr1 34848345 34848582 -162346850 - B4A SINE B4 0 292 26 7 850 474 220 32 63 chr1 34848741 34848867 -162346565 - B3A SINE B2 -14 184 63 7 850 2401 205 29 0 chr1 34848905 34849397 -162346035 + Lx9 LINE L1 7008 7513 -131 7 850 527 167 49 49 chr1 34849408 34849572 -162345860 + Lx9 LINE L1 7481 7644 0 7 850 263 177 0 16 chr1 34849659 34849722 -162345710 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 850 386 257 49 28 chr1 34850691 34850835 -162344597 - L1MA5 LINE L1 -4 6296 6150 7 850 984 256 0 19 chr1 34850885 34851092 -162344340 - B4 SINE B4 -5 287 85 7 850 468 35 0 0 chr1 34851097 34851155 -162344277 + (TCCC)n Simple_repeat Simple_repeat 2 59 0 7 850 939 124 0 14 chr1 34851158 34851297 -162344135 - B1_Mus2 SINE Alu -2 145 9 7 850 730 223 60 112 chr1 34851161 34851393 -162344039 - B4 SINE B4 -71 221 2 7 850 1434 75 37 0 chr1 34851968 34852156 -162343276 - B2_Mm2 SINE B2 0 195 1 7 850 569 310 87 76 chr1 34852624 34852955 -162342477 - ORR1E LTR MaLR -8 371 5 7 850 1033 309 29 0 chr1 34853105 34853316 -162342116 + B4 SINE B4 2 214 -78 7 850 180 0 0 0 chr1 34853316 34853336 -162342096 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 850 1033 309 29 0 chr1 34853336 34853370 -162342062 + B4 SINE B4 215 253 -39 7 850 1299 96 11 0 chr1 34853371 34853548 -162341884 + B2_Mm1t SINE B2 1 179 -14 7 850 482 18 0 0 chr1 34853571 34853627 -162341805 + B2_Mm2 SINE B2 47 102 -93 7 850 180 0 0 0 chr1 34853651 34853671 -162341761 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 850 1162 58 0 0 chr1 34853733 34853871 -162341561 - B1_Mus1 SINE Alu -9 139 2 7 850 279 306 18 101 chr1 34853878 34853987 -162341445 - B3 SINE B2 -112 104 5 7 850 591 294 11 27 chr1 34855576 34855761 -162339671 - B3A SINE B2 -15 183 2 7 850 216 0 0 0 chr1 34857399 34857423 -162338009 + (T)n Simple_repeat Simple_repeat 1 24 0 7 850 304 254 48 66 chr1 34857709 34857938 -162337494 - RMER15 LTR ERVL -159 416 72 7 850 489 281 49 49 chr1 34858046 34858188 -162337244 + ID_B1 SINE B4 60 201 -23 7 850 492 59 0 0 chr1 34860763 34860831 -162334601 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 850 216 0 0 0 chr1 34861964 34861988 -162333444 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 7 850 1233 89 50 11 chr1 34864923 34865105 -162330327 - B2_Mm1t SINE B2 -4 189 1 7 851 762 254 82 62 chr1 34865672 34866025 -162329407 + B4A SINE B4 1 259 -33 7 851 233 221 68 68 chr1 34866063 34866136 -162329296 + B4A SINE B4 220 292 0 7 851 240 194 194 0 chr1 34866185 34866288 -162329144 - MER33 DNA MER1_type -74 250 128 7 851 354 98 0 0 chr1 34872380 34872431 -162323001 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 851 200 59 0 29 chr1 34873617 34873652 -162321780 + (CTG)n Simple_repeat Simple_repeat 3 36 0 7 851 427 281 163 40 chr1 34874482 34874734 -162320698 + MTD LTR MaLR 121 403 -16 7 851 311 316 126 4 chr1 34875267 34875505 -162319927 + L1MB2 LINE L1 5810 6076 -95 7 851 608 226 92 52 chr1 34877369 34877542 -162317890 + B3A SINE B2 4 183 -15 7 851 314 346 133 59 chr1 34878238 34878628 -162316804 + L1ME2 LINE L1 5739 6157 -7 7 851 21 82 0 0 chr1 34878645 34878694 -162316738 + AT_rich Low_complexity Low_complexity 1 49 0 7 851 232 224 20 0 chr1 34879012 34879061 -162316371 + MTE2a LTR MaLR 272 321 -58 7 851 425 251 32 96 chr1 34879879 34879948 -162315484 + MT2B LTR ERVL 96 158 -426 7 851 979 164 0 0 chr1 34879948 34880094 -162315338 + B1_Mus1 SINE Alu 2 147 -1 7 851 930 144 144 0 chr1 34880589 34880762 -162314670 + B3 SINE B2 3 200 -16 7 851 297 75 0 0 chr1 34880783 34880823 -162314609 + (CAAG)n Simple_repeat Simple_repeat 4 43 0 7 851 429 225 25 0 chr1 34880831 34880911 -162314521 + ID4 SINE ID 2 83 0 7 851 365 244 217 44 chr1 34881630 34881810 -162313622 - ID_B1 SINE B4 -13 211 1 7 851 599 195 8 92 chr1 34882198 34882328 -162313104 + B1_Mur1 SINE Alu 2 120 -29 7 851 248 239 80 178 chr1 34882202 34882365 -162313067 + MT2B LTR ERVL 170 316 -285 7 851 820 185 143 0 chr1 34882711 34882900 -162312532 + B3 SINE B2 1 216 0 7 851 470 264 82 0 chr1 34883596 34883706 -162311726 - B3A SINE B2 -79 119 1 7 851 495 273 30 22 chr1 34883723 34883858 -162311574 - B1F1 SINE Alu -11 138 3 7 851 279 325 103 45 chr1 34883882 34884455 -162310977 + L1ME2 LINE L1 5365 5970 -194 7 851 385 269 45 18 chr1 34886052 34886162 -162309270 + PB1D9 SINE Alu 2 114 -6 7 851 282 264 92 0 chr1 34886722 34886809 -162308623 - RSINE1 SINE B4 -69 96 2 7 851 578 258 43 47 chr1 34886809 34886864 -162308568 + CYRA11_Mm Unknown Y-chromosome 116 169 -448 7 851 1084 157 11 26 chr1 34886864 34887054 -162308378 - URR1B DNA MER1_type -1 224 38 7 851 231 171 0 0 chr1 34887123 34887164 -162308268 - URR1B DNA MER1_type -184 41 1 7 851 523 275 90 42 chr1 34887165 34887332 -162308100 - 7SK RNA RNA -144 187 13 7 851 477 0 0 0 chr1 34887808 34887861 -162307571 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 851 216 0 0 0 chr1 34889909 34889933 -162305499 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 7 851 945 230 53 24 chr1 34890242 34890451 -162304981 + B3 SINE B2 2 216 0 7 851 797 209 14 38 chr1 34891124 34891328 -162304104 - B3A SINE B2 -25 191 1 7 851 892 135 269 6 chr1 34892378 34892549 -162302883 + B3 SINE B2 1 216 0 7 851 241 324 15 0 chr1 34892579 34892647 -162302785 + ID2 SINE ID 2 70 -13 7 851 1004 220 240 22 chr1 34893154 34893492 -162301940 - MTD LTR MaLR -22 397 7 7 851 359 316 148 44 chr1 34894035 34894217 -162301215 + ID_B1 SINE B4 22 222 -2 7 851 437 310 9 26 chr1 34894106 34894222 -162301210 + PB1D7 SINE Alu 7 120 0 7 851 658 227 43 0 chr1 34894258 34894399 -162301033 - B3A SINE B2 -51 147 1 7 851 256 295 238 0 chr1 34894416 34894538 -162300894 + B4 SINE B4 70 220 -72 7 851 585 148 50 0 chr1 34894438 34894539 -162300893 + PB1D9 SINE Alu 10 115 -5 7 851 251 209 9 28 chr1 34894540 34894648 -162300784 + (TA)n Simple_repeat Simple_repeat 1 106 0 7 851 194 207 17 0 chr1 34894689 34894747 -162300685 + (TATG)n Simple_repeat Simple_repeat 2 60 0 7 851 1790 181 93 14 chr1 34895216 34895581 -162299851 + ORR1B1 LTR MaLR 1 394 0 7 851 3471 23 5 0 chr1 34895626 34896020 -162299412 + MTA_Mm LTR MaLR 1 396 0 7 851 1854 103 21 19 chr1 34896913 34897244 -162298188 + ORR1A2 LTR MaLR 8 335 -11 7 851 183 42 0 0 chr1 34897699 34897723 -162297709 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 7 851 339 215 255 11 chr1 34897748 34897842 -162297590 + BC1_Mm scRNA scRNA 1 117 -35 7 851 420 278 57 24 chr1 34897867 34898044 -162297388 - B3A SINE B2 -8 187 2 7 851 23 33 0 0 chr1 34899211 34899241 -162296191 + AT_rich Low_complexity Low_complexity 1 30 0 7 851 27 0 0 0 chr1 34899527 34899554 -162295878 + GC_rich Low_complexity Low_complexity 1 27 0 7 851 27 0 0 0 chr1 34899615 34899642 -162295790 + GC_rich Low_complexity Low_complexity 1 27 0 7 851 21 71 0 0 chr1 34899791 34899833 -162295599 + GC_rich Low_complexity Low_complexity 1 42 0 7 851 28 29 0 0 chr1 34899868 34899903 -162295529 + GC_rich Low_complexity Low_complexity 1 35 0 7 851 292 268 12 12 chr1 34900090 34900173 -162295259 - ID_B1 SINE B4 -63 161 79 7 851 287 273 69 69 chr1 34900176 34900306 -162295126 - B3A SINE B2 -5 193 64 7 851 538 224 179 71 chr1 34900352 34900520 -162294912 - B3 SINE B2 -8 208 23 7 851 611 208 50 0 chr1 34900510 34900630 -162294802 + B1_Mus1 SINE Alu 22 147 -1 7 851 442 231 54 36 chr1 34901062 34901174 -162294258 - B1_Mus2 SINE Alu -33 114 1 7 851 297 167 141 77 chr1 34901107 34901185 -162294247 - MT2B LTR ERVL -376 225 143 7 851 251 270 87 29 chr1 34901763 34901866 -162293566 + B4 SINE B4 117 225 -67 7 851 304 265 79 71 chr1 34901866 34901879 -162293553 + B1F1 SINE Alu 72 150 0 7 851 1418 209 194 62 chr1 34902103 34902572 -162292860 - MT2A LTR ERVL -2 531 1 7 851 1146 268 44 116 chr1 34902984 34903163 -162292269 + MTE2a LTR MaLR 1 173 -206 7 851 1184 62 7 0 chr1 34903163 34903308 -162292124 - B1_Mus1 SINE Alu -1 147 2 7 851 1146 268 44 116 chr1 34903308 34903490 -162291942 + MTE2a LTR MaLR 174 344 -35 7 851 709 210 35 7 chr1 34903490 34903634 -162291798 - B1_Mur1 SINE Alu -1 148 1 7 851 1146 268 44 116 chr1 34903634 34903676 -162291756 + MTE2a LTR MaLR 345 376 -3 7 851 555 195 376 45 chr1 34903677 34903953 -162291479 - ORR1D2 LTR MaLR -2 368 1 7 851 237 246 18 0 chr1 34904183 34904240 -162291192 + L1MC LINE L1 5732 5789 -2093 7 851 277 243 40 26 chr1 34904534 34904610 -162290822 + L1M5 LINE L1 5542 5618 -826 8 851 288 0 0 0 chr1 34905021 34905053 -162290379 + (TATG)n Simple_repeat Simple_repeat 2 33 0 8 851 298 87 87 0 chr1 34905096 34905142 -162290290 + B3 SINE B2 5 54 -162 8 851 1276 216 212 18 chr1 34905263 34905602 -162289830 - MTD LTR MaLR -14 405 1 8 851 318 26 0 0 chr1 34905857 34905896 -162289536 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 851 395 327 9 37 chr1 34906238 34906346 -162289086 - ID_B1 SINE B4 -31 193 89 8 851 392 220 22 11 chr1 34906344 34906436 -162288996 - PB1D10 SINE Alu -24 93 1 8 851 421 269 116 58 chr1 34906447 34906672 -162288760 - L1MD3 LINE L1 -978 7017 6780 8 851 1241 54 0 0 chr1 34907817 34907964 -162287468 - B1_Mus1 SINE Alu 0 148 2 8 851 186 262 321 0 chr1 34908875 34908959 -162286473 + L2b LINE L2 3246 3356 -19 8 851 315 0 0 0 chr1 34909795 34909830 -162285602 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 851 212 111 0 22 chr1 34909845 34909891 -162285541 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 8 851 866 211 87 9 chr1 34910174 34910403 -162285029 - MTD LTR MaLR -157 222 2 8 851 420 310 131 6 chr1 34910539 34910647 -162284785 + MIRb SINE MIR 3 129 -139 8 851 219 36 0 0 chr1 34910647 34910675 -162284757 + (TTA)n Simple_repeat Simple_repeat 3 30 0 8 851 420 307 132 6 chr1 34910675 34910753 -162284679 + MIRb SINE MIR 130 216 -52 8 851 1235 278 81 14 chr1 34910842 34911189 -162284243 + MTE2b LTR MaLR 1 370 -9 8 851 818 248 12 49 chr1 34911391 34911637 -162283795 + MTD-int LTR MaLR 1022 1258 0 8 851 180 0 0 0 chr1 34911652 34911672 -162283760 + (T)n Simple_repeat Simple_repeat 1 20 0 8 851 819 258 58 72 chr1 34911673 34911915 -162283517 + MTD LTR MaLR 4 248 -171 8 851 186 43 0 0 chr1 34911915 34911938 -162283494 + (CCCCCT)n Simple_repeat Simple_repeat 2 24 0 8 851 819 258 58 72 chr1 34911938 34911987 -162283445 + MTD LTR MaLR 249 291 -128 8 851 527 201 63 80 chr1 34911989 34912222 -162283210 + MTD-int LTR MaLR 315 691 -567 8 851 245 330 55 28 chr1 34912256 34912365 -162283067 - RMER5 LTR ERV1 -11 523 412 8 851 477 288 112 11 chr1 34912448 34912627 -162282805 - RMER5 LTR ERV1 -297 237 41 8 851 257 0 30 0 chr1 34912661 34912694 -162282738 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 851 321 314 73 55 chr1 34912753 34912918 -162282514 - HAL1 LINE L1 -7 2500 2333 8 851 2860 128 61 18 chr1 34913267 34913760 -162281672 - RLTR28 LTR ERVL -10 514 1 8 851 861 209 69 10 chr1 34913929 34914132 -162281300 - B3 SINE B2 0 216 2 8 851 553 162 82 75 chr1 34914235 34914382 -162281050 - B1_Mur1 SINE Alu -1 148 1 8 851 454 284 103 0 chr1 34914427 34914582 -162280850 - B3A SINE B2 -27 171 1 8 851 25 31 0 0 chr1 34914696 34914728 -162280704 + AT_rich Low_complexity Low_complexity 1 32 0 8 851 628 226 14 43 chr1 34914793 34914932 -162280500 + B1_Mus1 SINE Alu 1 135 -13 8 851 677 266 11 34 chr1 34914988 34915167 -162280265 + B3A SINE B2 24 198 0 8 851 21 57 0 0 chr1 34915199 34915234 -162280198 + AT_rich Low_complexity Low_complexity 1 35 0 8 851 895 199 143 50 chr1 34916201 34916502 -162278930 + MTD LTR MaLR 89 417 -2 8 851 425 303 82 35 chr1 34916594 34916765 -162278667 - MTE2b LTR MaLR -200 179 1 8 851 21 57 0 0 chr1 34917427 34917462 -162277970 + AT_rich Low_complexity Low_complexity 1 35 0 8 851 447 342 0 0 chr1 34917483 34917641 -162277791 - RSINE1 SINE B4 -5 160 3 8 851 414 0 0 0 chr1 34917685 34917731 -162277701 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 851 225 0 0 0 chr1 34917731 34917755 -162277677 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 851 277 321 35 12 chr1 34917895 34917980 -162277452 - RSINE1 SINE B4 -16 149 63 8 851 635 225 119 0 chr1 34918026 34918059 -162277373 - B3 SINE B2 0 216 184 8 851 261 0 0 0 chr1 34918059 34918088 -162277344 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 851 635 225 119 0 chr1 34918088 34918214 -162277218 - B3 SINE B2 -33 183 39 8 851 238 172 15 30 chr1 34918580 34918646 -162276786 + G-rich Low_complexity Low_complexity 5 69 0 8 851 481 292 89 0 chr1 34919527 34919695 -162275737 - Lx8 LINE L1 -315 7158 6976 8 851 229 248 84 30 chr1 34920594 34920697 -162274735 - B4 SINE B4 -19 273 79 8 851 285 362 48 24 chr1 34920881 34921048 -162274384 - MLT1B LTR MaLR -215 175 5 8 851 228 250 0 0 chr1 34921154 34921198 -162274234 - B1F2 SINE Alu -80 69 26 8 851 229 347 0 78 chr1 34921160 34921263 -162274169 - B4A SINE B4 -144 148 54 8 851 815 269 58 121 chr1 34921551 34921932 -162273500 + ORR1E LTR MaLR 1 357 -2 8 851 802 112 95 22 chr1 34922085 34922222 -162273210 + B1_Mur3 SINE Alu 3 149 0 8 851 205 175 0 0 chr1 34922223 34922263 -162273169 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 8 851 535 282 85 28 chr1 34923280 34923492 -162271940 + ID_B1 SINE B4 1 224 0 8 851 880 152 6 6 chr1 34923495 34923661 -162271771 + (TA)n Simple_repeat Simple_repeat 2 167 0 8 851 786 241 18 6 chr1 34923670 34923833 -162271599 - RSINE1 SINE B4 0 165 1 8 851 281 293 71 64 chr1 34923840 34924106 -162271326 - L1MDa LINE L1 -1512 5025 4758 8 851 723 188 13 40 chr1 34924115 34924265 -162271167 - B3 SINE B2 -6 210 65 8 851 377 268 47 86 chr1 34924340 34924511 -162270921 - L1MDa LINE L1 -5195 1345 1173 8 851 900 162 0 0 chr1 34924513 34924655 -162270777 + B1_Mur3 SINE Alu 2 143 -6 8 851 557 252 0 0 chr1 34924666 34924769 -162270663 + B1_Mur2 SINE Alu 1 103 -46 8 851 262 276 133 8 chr1 34925100 34925228 -162270204 - L1MDa LINE L1 -5465 1168 1025 8 851 305 280 19 74 chr1 34925712 34925820 -162269612 - L1MDa LINE L1 -6312 321 220 8 851 366 80 0 0 chr1 34925855 34925905 -162269527 + (TATG)n Simple_repeat Simple_repeat 2 51 0 8 851 524 280 8 0 chr1 34925983 34926101 -162269331 - RSINE1 SINE B4 -45 120 2 8 851 528 288 103 0 chr1 34926499 34926645 -162268787 - RSINE1 SINE B4 -2 163 3 8 851 785 211 26 36 chr1 34926759 34926951 -162268481 - B3 SINE B2 -26 190 1 8 851 589 196 21 155 chr1 34927065 34927252 -162268180 + B4A SINE B4 1 162 -130 8 851 338 209 65 11 chr1 34927324 34927416 -162268016 - MER53 DNA hAT -96 97 1 8 851 1339 72 61 0 chr1 34927425 34927605 -162267827 - B2_Mm2 SINE B2 -3 192 2 8 851 204 136 68 0 chr1 34927901 34927945 -162267487 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 851 282 203 0 30 chr1 34928085 34928151 -162267281 - RSINE1 SINE B4 0 165 102 8 851 307 304 18 9 chr1 34928444 34928557 -162266875 - PB1D10 SINE Alu -2 115 2 8 851 1439 212 34 76 chr1 34928895 34929277 -162266155 + ORR1D2 LTR MaLR 1 366 -4 8 851 1057 226 59 47 chr1 34929279 34929688 -162265744 + ORR1D2-int LTR MaLR 12 366 -4 8 851 23 33 0 0 chr1 34929846 34929876 -162265556 + AT_rich Low_complexity Low_complexity 1 30 0 8 851 631 294 23 34 chr1 34930028 34930204 -162265228 - B3A SINE B2 -24 174 1 8 851 249 336 0 0 chr1 34930529 34930633 -162264799 + GA-rich Low_complexity Low_complexity 1 104 0 8 851 243 0 0 0 chr1 34930801 34930828 -162264604 + (A)n Simple_repeat Simple_repeat 1 27 0 8 851 421 271 75 0 chr1 34931310 34931443 -162263989 + B1_Mur1 SINE Alu 1 143 -6 8 851 300 53 0 0 chr1 34931444 34931482 -162263950 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 8 851 264 264 102 55 chr1 34932098 34932226 -162263206 - RLTR24 LTR ERV1 -44 485 352 8 851 407 241 0 0 chr1 34932429 34932516 -162262916 - RLTR24 LTR ERV1 -442 87 1 8 851 1513 191 63 84 chr1 34932745 34933127 -162262305 - ORR1D1 LTR MaLR 0 374 1 8 851 554 159 46 9 chr1 34933193 34933301 -162262131 - PB1D9 SINE Alu -7 113 2 8 851 702 278 84 0 chr1 34933310 34933501 -162261931 - B3 SINE B2 -9 207 1 8 851 785 337 32 18 chr1 34936467 34936745 -162258687 + B4A SINE B4 10 291 -1 8 851 507 207 164 0 chr1 34937705 34937821 -162257611 - B1_Mur1 SINE Alu -9 140 6 8 851 783 239 88 6 chr1 34937826 34938007 -162257425 - B3A SINE B2 -2 196 1 8 851 2387 169 33 12 chr1 34938094 34938504 -162256928 + RLTR25A LTR ERVK 103 523 -580 8 851 2222 54 7 0 chr1 34938504 34938781 -162256651 - L1Md_F2 LINE L1 -8 6574 6296 8 851 2387 169 33 12 chr1 34938781 34938794 -162256638 + RLTR25A LTR ERVK 524 535 -568 8 851 6448 52 2 6 chr1 34938794 34939598 -162255834 + L1_Mm LINE L1 4771 5571 -312 8 851 1036 178 26 5 chr1 34939598 34939790 -162255642 + RLTR25A LTR ERVK 481 676 -427 8 851 735 229 0 0 chr1 34940389 34940564 -162254868 + CT-rich Low_complexity Low_complexity 2 176 0 8 851 231 308 0 19 chr1 34940569 34940622 -162254810 - tRNA-Ala-GCY_ tRNA tRNA -9 66 15 8 851 22211 98 12 9 chr1 34941087 34943730 -162251702 + L1_Mus3 LINE L1 236 2869 -3017 8 851 861 10 0 0 chr1 34943730 34943828 -162251604 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 8 851 22211 161 9 45 chr1 34943828 34945382 -162250050 + L1_Mus3 LINE L1 2870 4439 -1447 8 851 988 69 0 0 chr1 34945382 34945512 -162249920 + B1_Mus1 SINE Alu 10 139 -9 8 851 207 0 0 0 chr1 34945512 34945535 -162249897 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 851 22211 161 9 45 chr1 34945535 34945878 -162249554 + L1_Mus3 LINE L1 4440 4749 -1137 8 851 3386 41 5 0 chr1 34945878 34946272 -162249160 + MTA_Mm LTR MaLR 1 396 0 8 851 22211 116 7 21 chr1 34946272 34948162 -162247270 + L1_Mus3 LINE L1 4750 6638 0 8 851 249 348 0 0 chr1 34950164 34950253 -162245179 + CT-rich Low_complexity Low_complexity 3 91 0 8 851 355 298 0 32 chr1 34952054 34952179 -162243253 + MTEa LTR MaLR 2 122 -257 8 851 731 283 68 65 chr1 34952578 34952945 -162242487 + MT2A LTR ERVL 166 533 0 8 851 939 225 22 38 chr1 34953534 34953719 -162241713 - B3A SINE B2 -16 182 1 8 851 234 282 13 13 chr1 34953720 34953799 -162241633 - B4 SINE B4 -199 93 15 8 851 502 328 52 33 chr1 34953882 34954093 -162241339 - Tigger5 DNA MER2_type -2170 236 22 8 851 266 143 20 0 chr1 34954144 34954193 -162241239 + MTE2b LTR MaLR 330 379 0 8 851 423 141 0 0 chr1 34954252 34954344 -162241088 + (GA)n Simple_repeat Simple_repeat 2 93 0 8 851 189 175 0 0 chr1 34954349 34954389 -162241043 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 851 342 107 0 0 chr1 34954467 34954523 -162240909 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 851 202 247 27 27 chr1 34954562 34954584 -162240848 + (TATG)n Simple_repeat Simple_repeat 4 24 0 9 851 2357 98 6 15 chr1 34954584 34954914 -162240518 - ORR1A2 LTR MaLR 0 327 1 9 851 202 247 27 27 chr1 34954914 34954966 -162240466 + (TATG)n Simple_repeat Simple_repeat 2 55 0 9 851 285 262 38 0 chr1 34955015 34955026 -162240406 - B4 SINE B4 -77 215 205 9 851 309 26 0 0 chr1 34955026 34955064 -162240368 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 9 851 285 262 38 0 chr1 34955064 34955132 -162240300 - B4 SINE B4 -88 204 135 9 851 1016 277 34 14 chr1 34955729 34956022 -162239410 - MTE2b LTR MaLR -63 316 18 9 851 495 0 0 0 chr1 34956022 34956077 -162239355 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 9 851 2342 73 38 3 chr1 34956077 34956393 -162239039 - ORR1A2 LTR MaLR 0 327 1 9 851 1880 149 19 3 chr1 34956406 34956715 -162238717 - Lx4A LINE L1 0 7058 6745 9 851 2701 73 80 8 chr1 34956715 34957103 -162238329 + Lx4A LINE L1 5779 6194 -864 9 851 356 226 42 34 chr1 34957110 34957229 -162238203 - Lx8 LINE L1 -2 7471 7352 9 851 258 219 0 0 chr1 34957400 34957464 -162237968 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 851 575 263 177 28 chr1 34957502 34957577 -162237855 - B4 SINE B4 0 292 218 9 851 285 29 0 0 chr1 34957577 34957611 -162237821 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 9 851 575 263 177 28 chr1 34957611 34957750 -162237682 - B4 SINE B4 -75 217 47 9 851 793 174 23 0 chr1 34957751 34957883 -162237549 + B1_Mus1 SINE Alu 2 136 -12 9 851 396 97 0 0 chr1 34957885 34957947 -162237485 + (CAA)n Simple_repeat Simple_repeat 2 63 0 9 851 223 263 12 50 chr1 34958609 34958689 -162236743 + AluG_3 SINE Alu 146 222 -89 9 851 282 237 76 76 chr1 34958892 34958997 -162236435 + Lx8 LINE L1 5768 5905 -1568 9 851 26142 128 16 16 chr1 34959878 34960852 -162234580 - Lx LINE L1 -650 6004 5028 9 851 186 43 0 0 chr1 34960852 34960875 -162234557 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 9 851 1288 85 11 11 chr1 34960879 34961057 -162234375 - B2_Mm1t SINE B2 -14 179 2 9 851 26142 146 22 18 chr1 34961057 34965692 -162229740 - Lx LINE L1 -859 5027 375 9 851 343 202 0 21 chr1 34966765 34966861 -162228571 + CT-rich Low_complexity Low_complexity 2 95 0 9 851 344 22 0 22 chr1 34966871 34966917 -162228515 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 851 680 268 141 34 chr1 34966926 34967189 -162228243 - B4A SINE B4 -1 291 1 9 851 274 279 0 0 chr1 34967862 34967930 -162227502 + (TATG)n Simple_repeat Simple_repeat 1 68 0 9 851 613 155 17 25 chr1 34967987 34968106 -162227326 - B1_Mus2 SINE Alu 0 147 30 9 851 245 224 67 58 chr1 34968032 34968136 -162227296 - MT2B LTR ERVL -344 257 153 9 851 222 257 108 0 chr1 34968196 34968270 -162227162 - B4 SINE B4 -207 85 4 9 851 24 85 0 0 chr1 34968388 34968447 -162226985 + AT_rich Low_complexity Low_complexity 1 59 0 9 851 821 282 10 0 chr1 34968469 34968678 -162226754 - B3 SINE B2 -5 211 1 9 851 1074 114 0 20 chr1 34969223 34969375 -162226057 - B1_Mur4 SINE Alu -1 149 1 9 851 1050 108 0 0 chr1 34969375 34969637 -162225795 + (TTC)n Simple_repeat Simple_repeat 1 262 0 9 851 278 253 75 12 chr1 34969637 34969717 -162225715 - RMER30 DNA MER1_type -111 91 7 9 851 21 82 0 0 chr1 34970291 34970340 -162225092 + AT_rich Low_complexity Low_complexity 1 49 0 9 851 1096 231 131 41 chr1 34970394 34970714 -162224718 - ORR1B2 LTR MaLR 0 367 19 9 851 240 48 0 45 chr1 34970853 34970897 -162224535 - L1_Mus2 LINE L1 0 6566 6525 9 851 256 312 117 99 chr1 34970907 34971249 -162224183 - Lx9 LINE L1 -218 7255 6908 9 851 2505 101 0 0 chr1 34971459 34971786 -162223646 + ORR1A2 LTR MaLR 1 327 0 9 851 2649 12 0 0 chr1 34971924 34972250 -162223182 + IAPLTR1a_Mm LTR ERVK 1 326 -11 9 851 4527 60 65 43 chr1 34972251 34972899 -162222533 + IAPEz-int LTR ERVK 1 662 -5819 9 851 454 66 0 32 chr1 34972899 34972962 -162222470 + IAPEz-int LTR ERVK 1359 1419 -5062 9 851 1863 115 4 4 chr1 34972951 34973213 -162222219 + IAPEz-int LTR ERVK 2236 2497 -5183 9 851 953 80 24 0 chr1 34973208 34973333 -162222099 + IAPEz-int LTR ERVK 4783 4910 -2770 9 851 21717 9 2 0 chr1 34973335 34975688 -162219744 + IAPEz-int LTR ERVK 4123 6481 0 9 851 3028 12 3 0 chr1 34975688 34976024 -162219408 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 851 1120 214 113 3 chr1 34976284 34976621 -162218811 - ORR1D1 LTR MaLR 0 374 1 9 851 23 78 0 0 chr1 34976908 34976959 -162218473 + AT_rich Low_complexity Low_complexity 1 51 0 9 851 340 251 0 76 chr1 34977132 34977248 -162218184 - Lx9 LINE L1 -594 7050 6820 9 851 1009 224 10 5 chr1 34977278 34977480 -162217952 - B3 SINE B2 -9 207 5 9 851 339 25 0 0 chr1 34977760 34977800 -162217632 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 851 897 237 72 68 chr1 34978539 34978615 -162216817 - B4 SINE B4 0 292 215 9 851 4264 51 2 2 chr1 34978615 34979129 -162216303 + L1_Mus1 LINE L1 6050 6563 -4 9 851 897 237 72 68 chr1 34979129 34979315 -162216117 - B4 SINE B4 -78 214 29 9 851 639 252 12 66 chr1 34979323 34979490 -162215942 - ORR1D1 LTR MaLR -1 373 212 9 851 291 171 50 17 chr1 34979506 34979625 -162215807 + GA-rich Low_complexity Low_complexity 5 127 0 9 851 831 167 86 35 chr1 34979625 34979799 -162215633 - ORR1D1 LTR MaLR -191 183 1 9 851 186 43 0 0 chr1 34980200 34980223 -162215209 + (T)n Simple_repeat Simple_repeat 1 23 0 9 851 896 186 4 93 chr1 34981249 34981474 -162213958 + ID_B1 SINE B4 5 209 -15 9 851 801 190 7 0 chr1 34981578 34981715 -162213717 - B1_Mur2 SINE Alu -11 138 1 9 851 297 179 14 43 chr1 34981763 34981833 -162213599 - B1F SINE Alu -61 88 21 9 851 752 182 44 0 chr1 34982152 34982289 -162213143 - B1_Mur2 SINE Alu -6 143 1 9 851 1151 28 16 38 chr1 34982829 34983013 -162212419 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 851 281 258 237 0 chr1 34983019 34983116 -162212316 - MTE2b LTR MaLR -41 338 219 9 851 1243 291 67 19 chr1 34983119 34983540 -162211892 - Lx8 LINE L1 -578 6895 6455 9 851 1711 217 29 57 chr1 34983582 34984060 -162211372 + RLTR20C LTR ERVK 70 534 0 9 851 267 31 0 0 chr1 34984629 34984661 -162210771 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 851 283 287 19 0 chr1 34987576 34987684 -162207748 + RLTR31_Mur LTR ERVK 5 114 -439 9 851 288 215 0 12 chr1 34987654 34987725 -162207707 + RLTR31_Mur LTR ERVK 52 121 -432 9 851 5411 70 31 15 chr1 34987725 34988209 -162207223 + RLTR22_Mus LTR ERVK 1 494 -1314 9 851 1039 58 65 0 chr1 34988209 34988347 -162207085 + B1_Mus1 SINE Alu 2 148 0 9 851 5411 70 31 15 chr1 34988347 34988672 -162206760 + RLTR22_Mus LTR ERVK 495 823 -985 9 851 1245 171 56 0 chr1 34988927 34989179 -162206253 + RLTR22_Mus LTR ERVK 1543 1808 0 9 851 524 275 12 62 chr1 34989182 34989426 -162206006 + RLTR31_Mur LTR ERVK 111 342 -211 9 851 477 0 0 0 chr1 34989426 34989479 -162205953 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 851 210 150 0 0 chr1 34989479 34989519 -162205913 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 9 851 2079 83 72 13 chr1 34989799 34990104 -162205328 - ORR1A2 LTR MaLR -4 323 1 9 851 588 307 30 25 chr1 34990431 34990628 -162204804 + B4 SINE B4 4 201 -91 9 851 1094 80 0 0 chr1 34990667 34990805 -162204627 - B1_Mus2 SINE Alu -8 139 2 9 851 247 384 0 34 chr1 34990805 34990894 -162204538 + B4 SINE B4 201 286 -6 9 851 522 277 87 40 chr1 34991162 34991335 -162204097 - MTEa LTR MaLR -198 181 1 9 851 240 86 0 0 chr1 34991354 34991389 -162204043 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 851 731 97 18 0 chr1 34991490 34991603 -162203829 + (TCCC)n Simple_repeat Simple_repeat 4 118 0 9 851 370 266 164 21 chr1 34991604 34991749 -162203683 - B4 SINE B4 -46 246 83 9 851 342 209 0 15 chr1 34991805 34991873 -162203559 - B4 SINE B4 -207 85 19 9 851 568 264 119 3 chr1 34992052 34992218 -162203214 + B3A SINE B2 28 212 -4 9 851 839 226 52 60 chr1 34992472 34992511 -162202921 - B4A SINE B4 -2 290 252 9 851 1408 181 244 74 chr1 34992511 34992782 -162202650 + RMER4B LTR ERVK 1 268 -317 9 851 351 0 0 0 chr1 34992782 34992821 -162202611 + (TGG)n Simple_repeat Simple_repeat 2 40 0 9 851 1408 181 244 74 chr1 34992821 34993049 -162202383 + RMER4B LTR ERVK 269 585 0 9 851 839 226 52 60 chr1 34993049 34993258 -162202174 - B4A SINE B4 -41 251 45 9 851 21 57 0 0 chr1 34994250 34994285 -162201147 + AT_rich Low_complexity Low_complexity 1 35 0 9 851 718 246 35 0 chr1 34994314 34994456 -162200976 - RSINE1 SINE B4 -16 149 3 9 851 245 326 118 44 chr1 34994479 34994614 -162200818 - B1F1 SINE Alu -1 148 4 9 851 851 252 96 30 chr1 34994706 34995070 -162200362 + L1MA5 LINE L1 5900 6287 -13 9 851 204 111 0 0 chr1 34995089 34995125 -162200307 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 851 1127 7 15 0 chr1 34995189 34995324 -162200108 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 9 851 485 298 28 0 chr1 34995328 34995469 -162199963 - B4A SINE B4 -81 211 67 9 851 318 333 33 0 chr1 34995642 34995792 -162199640 + L1M5 LINE L1 5285 5439 -734 9 851 2499 126 22 12 chr1 34995810 34996211 -162199221 + MTB_Mm LTR MaLR 3 407 0 9 852 953 187 14 23 chr1 34996388 34996602 -162198830 - L1_Rod LINE L1 -1927 3920 3709 9 852 435 268 120 17 chr1 34996651 34996826 -162198606 - L1_Rod LINE L1 -2417 3430 3238 9 852 201 39 0 0 chr1 34996840 34996866 -162198566 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 9 852 780 200 0 0 chr1 34996867 34997042 -162198390 + CT-rich Low_complexity Low_complexity 3 177 0 9 852 287 95 24 0 chr1 34997042 34997084 -162198348 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 9 852 429 223 0 19 chr1 34997084 34997208 -162198224 - L1_Mur2 LINE L1 -2645 3235 3118 9 852 1165 239 108 73 chr1 34998000 34998174 -162197258 - Lx8 LINE L1 -143 7330 7142 9 852 1293 122 0 11 chr1 34998174 34998365 -162197067 - B2_Mm2 SINE B2 -6 189 1 9 852 1165 239 108 73 chr1 34998365 34998587 -162196845 - Lx8 LINE L1 -332 7141 6920 9 852 192 214 0 0 chr1 34998902 34998958 -162196474 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 852 420 20 0 0 chr1 34998962 34999011 -162196421 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 852 1125 251 48 7 chr1 34999053 34999326 -162196106 - B4A SINE B4 -6 286 3 9 852 407 68 17 0 chr1 34999400 34999459 -162195973 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 852 487 303 128 20 chr1 34999467 34999716 -162195716 - B4A SINE B4 -16 276 1 9 852 642 89 0 0 chr1 35000388 35000478 -162194954 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 852 33 25 0 0 chr1 35001172 35001212 -162194220 + AT_rich Low_complexity Low_complexity 1 40 0 2 852 617 93 9 0 chr1 35001240 35001347 -162194085 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 3 852 35708 61 10 5 chr1 35001387 35003094 -162192338 - L1Md_F2 LINE L1 0 6582 4872 4 852 1564 59 0 0 chr1 35003094 35003280 -162192152 + B2_Mm1t SINE B2 1 186 -7 5 852 35708 77 13 2 chr1 35003280 35007582 -162187850 - L1Md_F2 LINE L1 -1012 4871 515 4 852 897 269 48 0 chr1 35007593 35007801 -162187631 - ID_B1 SINE B4 -5 219 2 6 852 297 0 0 0 chr1 35008276 35008309 -162187123 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 852 438 20 0 0 chr1 35008351 35008402 -162187030 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 852 617 308 68 42 chr1 35008437 35008627 -162186805 + B4 SINE B4 98 292 0 8 852 330 91 0 0 chr1 35008643 35008698 -162186734 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 852 948 271 8 47 chr1 35008844 35009080 -162186352 + B4 SINE B4 6 232 -60 1 852 896 140 0 13 chr1 35009085 35009244 -162186188 + ORR1A4 LTR MaLR 1 157 -172 1 852 1119 210 82 97 chr1 35009243 35009615 -162185817 + RLTR22_Mur LTR ERVK 174 555 -1293 1 852 3580 78 97 19 chr1 35009615 35010141 -162185291 + RMER2 LTR ERV1 1 567 0 1 852 1119 237 76 144 chr1 35010141 35010386 -162185046 + RLTR22_Mur LTR ERVK 556 749 -1099 1 852 898 274 92 84 chr1 35010480 35011089 -162184343 + RLTR22_Mur LTR ERVK 815 1573 -275 1 852 247 299 11 75 chr1 35011117 35011211 -162184221 - Tigger7 DNA MER2_type -2394 97 10 1 852 1669 203 18 54 chr1 35011473 35011864 -162183568 + ORR1C2 LTR MaLR 1 377 -7 1 852 387 0 0 0 chr1 35012024 35012067 -162183365 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 852 364 302 70 12 chr1 35012141 35012312 -162183120 - Lx8 LINE L1 -2 7471 7291 1 852 1179 228 69 22 chr1 35012495 35012769 -162182663 - Lx8 LINE L1 -196 7277 6991 1 852 2629 268 57 17 chr1 35012857 35013579 -162181853 - Lx8 LINE L1 -618 6855 6105 1 852 931 286 55 7 chr1 35014942 35015232 -162180200 - Lx8 LINE L1 -978 6666 6230 1 852 924 287 18 18 chr1 35015422 35015699 -162179733 - B4A SINE B4 -14 278 2 1 852 1037 233 10 10 chr1 35016181 35016389 -162179043 - B3 SINE B2 -7 209 2 2 852 670 263 61 35 chr1 35016869 35017066 -162178366 - ID_B1 SINE B4 -21 203 2 2 852 434 304 82 35 chr1 35017187 35017419 -162178013 - L1MA7 LINE L1 -104 6187 5945 2 852 709 166 6 39 chr1 35017930 35018112 -162177320 + GA-rich Low_complexity Low_complexity 4 179 0 2 852 1165 245 17 24 chr1 35018443 35018736 -162176696 - ORR1E LTR MaLR -44 315 25 2 852 297 51 0 0 chr1 35018737 35018776 -162176656 + (TGGGGG)n Simple_repeat Simple_repeat 1 39 0 2 852 241 282 75 25 chr1 35018811 35018891 -162176541 - L1MA7 LINE L1 -411 5889 5806 2 852 22 35 0 0 chr1 35019381 35019410 -162176022 + AT_rich Low_complexity Low_complexity 1 29 0 2 852 360 0 0 0 chr1 35020273 35020313 -162175119 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 852 1064 214 137 28 chr1 35020587 35020909 -162174523 - ORR1E LTR MaLR -2 357 1 2 852 366 80 0 0 chr1 35020912 35020962 -162174470 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 852 782 247 0 0 chr1 35020976 35021126 -162174306 - B3A SINE B2 -46 152 3 3 852 988 259 140 33 chr1 35021486 35021821 -162173611 - MTD LTR MaLR 0 419 49 3 852 413 297 135 31 chr1 35023868 35024195 -162171237 + L1ME2 LINE L1 5625 5985 -179 3 852 236 211 0 17 chr1 35025248 35025306 -162170126 - MLT1A1 LTR MaLR 0 408 352 3 852 533 195 132 9 chr1 35025312 35025426 -162170006 + Lx9 LINE L1 5800 5927 -1717 3 852 2814 199 80 18 chr1 35025408 35025924 -162169508 + Lx9 LINE L1 6950 7476 -168 3 852 360 0 0 0 chr1 35025924 35025964 -162169468 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 852 2814 199 80 18 chr1 35025964 35026099 -162169333 + Lx9 LINE L1 7477 7640 -4 3 852 569 40 0 0 chr1 35026838 35026913 -162168519 - B1_Mm SINE Alu 0 147 73 3 852 297 169 0 0 chr1 35027307 35027366 -162168066 + GA-rich Low_complexity Low_complexity 1 59 0 3 852 1986 196 43 41 chr1 35027904 35028367 -162167065 + Lx9 LINE L1 6998 7461 -183 3 852 1092 254 16 56 chr1 35028709 35029013 -162166419 - B4 SINE B4 0 292 1 3 852 1219 85 55 22 chr1 35029579 35029760 -162165672 - B2_Mm2 SINE B2 -8 187 1 4 852 425 263 0 57 chr1 35030279 35030384 -162165048 + RSINE1 SINE B4 38 136 -29 4 852 1461 277 49 7 chr1 35030763 35031192 -162164240 + Lx8 LINE L1 6309 6755 -718 4 852 1502 280 65 20 chr1 35031189 35031634 -162163798 + Lx8 LINE L1 7008 7472 -1 4 852 891 282 21 11 chr1 35031666 35031953 -162163479 + B4 SINE B4 1 290 -2 4 852 200 94 0 30 chr1 35031985 35032018 -162163414 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 852 344 269 0 21 chr1 35032040 35032135 -162163297 - L1MD2 LINE L1 -12 6230 6138 4 852 745 235 6 36 chr1 35032230 35032398 -162163034 - B3 SINE B2 -52 164 2 4 852 686 251 115 97 chr1 35032547 35033144 -162162288 - L1MD2 LINE L1 -367 5992 5372 4 852 338 239 0 0 chr1 35033307 35033374 -162162058 - B4 SINE B4 -222 70 4 4 852 207 245 20 0 chr1 35033552 35033601 -162161831 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 4 852 635 301 80 22 chr1 35033624 35033899 -162161533 - B4 SINE B4 -1 291 1 4 852 401 319 31 93 chr1 35034078 35034303 -162161129 - L1MD2 LINE L1 -1526 4620 4410 4 852 228 67 0 0 chr1 35034306 35034336 -162161096 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5 852 636 254 0 0 chr1 35034337 35034471 -162160961 - B1_Mur1 SINE Alu -8 141 8 5 852 337 351 0 0 chr1 35034680 35034854 -162160578 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 852 1249 179 12 8 chr1 35035016 35035269 -162160163 + RLTR1 LTR ERV1 371 624 0 5 852 937 348 73 7 chr1 35035297 35035723 -162159709 - RMER15-int LTR ERVL -4406 593 140 5 852 1257 225 117 0 chr1 35035734 35036041 -162159391 + ORR1E LTR MaLR 15 357 -2 5 852 265 289 12 50 chr1 35036065 35036145 -162159287 - RMER15-int LTR ERVL -4729 270 194 5 852 639 287 96 18 chr1 35036236 35036456 -162158976 - RMER15 LTR ERVL -40 535 299 5 852 1601 135 0 15 chr1 35036981 35037252 -162158180 - RMER6C LTR ERVK 0 690 424 5 852 402 209 0 0 chr1 35037643 35037782 -162157650 + (TG)n Simple_repeat Simple_repeat 2 140 0 5 852 354 311 86 4 chr1 35038350 35038469 -162156963 - B4A SINE B4 -2 290 166 5 852 246 127 99 0 chr1 35039589 35039660 -162155772 + T-rich Low_complexity Low_complexity 2 79 0 6 852 346 329 58 36 chr1 35039660 35039762 -162155670 - B4 SINE B4 -105 187 85 5 852 234 0 0 0 chr1 35039762 35039788 -162155644 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 852 346 320 54 39 chr1 35039788 35039831 -162155601 - B4 SINE B4 -208 84 38 5 852 243 0 0 0 chr1 35039856 35039883 -162155549 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 852 765 323 58 33 chr1 35040293 35040350 -162155082 - B4A SINE B4 -6 286 230 6 852 894 91 0 20 chr1 35040350 35040496 -162154936 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 6 852 765 323 58 33 chr1 35040496 35040713 -162154719 - B4A SINE B4 -63 229 6 6 852 421 258 305 9 chr1 35041353 35041576 -162153856 + RMER15 LTR ERVL 287 575 0 6 852 960 338 94 48 chr1 35041579 35042225 -162153207 + RMER15-int LTR ERVL 4 679 -4320 6 852 844 276 47 0 chr1 35042257 35042471 -162152961 + RMER15-int LTR ERVL 726 949 -4050 6 852 1246 262 203 25 chr1 35042762 35043272 -162152160 + RMER15-int LTR ERVL 947 1549 -3450 6 852 192 40 0 0 chr1 35043272 35043297 -162152135 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 852 1246 274 37 61 chr1 35043297 35043521 -162151911 + RMER15-int LTR ERVL 1550 1767 -3232 6 852 1157 61 0 13 chr1 35044229 35044378 -162151054 - B1_Mus1 SINE Alu -1 147 1 6 852 255 197 197 0 chr1 35044387 35044458 -162150974 - B4 SINE B4 -73 219 135 6 852 22 35 0 0 chr1 35045872 35045901 -162149531 + AT_rich Low_complexity Low_complexity 1 29 0 6 852 318 152 54 18 chr1 35045976 35046143 -162149289 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 7 852 2907 120 12 109 chr1 35046203 35046493 -162148939 + RLTR28 LTR ERVL 2 290 -234 7 852 207 0 0 0 chr1 35046493 35046516 -162148916 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 852 1212 41 7 0 chr1 35046519 35046665 -162148767 - B1_Mm SINE Alu 0 147 1 7 852 2907 120 12 109 chr1 35046665 35046949 -162148483 + RLTR28 LTR ERVL 291 524 0 7 852 180 200 0 0 chr1 35048065 35048120 -162147312 + (ATTG)n Simple_repeat Simple_repeat 4 58 0 7 852 499 248 14 14 chr1 35048377 35048524 -162146908 + L1M2 LINE L1 4620 4766 -1377 7 852 945 255 0 5 chr1 35048542 35048742 -162146690 + ID_B1 SINE B4 12 211 -13 7 852 243 0 0 0 chr1 35048742 35048769 -162146663 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 852 661 272 8 77 chr1 35048792 35049039 -162146393 + L1M2 LINE L1 4763 4992 -1151 7 852 370 335 48 43 chr1 35049434 35049643 -162145789 + Tigger7 DNA MER2_type 2278 2487 -4 7 852 577 256 96 72 chr1 35049644 35050074 -162145358 + L1M2 LINE L1 5271 5708 -583 7 852 335 278 16 80 chr1 35050103 35050127 -162145305 + PB1D10 SINE Alu 1 20 -97 7 852 1486 151 184 25 chr1 35050127 35050480 -162144952 + RLTR9E LTR ERVK 1 409 0 8 852 335 278 16 80 chr1 35050480 35050580 -162144852 + PB1D10 SINE Alu 21 117 0 7 852 586 283 69 31 chr1 35050681 35050969 -162144463 + L1MA4 LINE L1 4977 5275 -868 8 852 347 248 103 34 chr1 35050971 35051088 -162144344 + PB1 SINE Alu 1 125 -2 8 852 523 167 18 0 chr1 35051099 35051213 -162144219 + CT-rich Low_complexity Low_complexity 2 117 0 8 852 195 162 0 0 chr1 35051403 35051440 -162143992 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 8 852 1055 278 102 87 chr1 35051500 35052241 -162143191 + L1MA4 LINE L1 5270 6019 -278 8 852 4318 89 12 2 chr1 35052401 35052975 -162142457 + MT2B2 LTR ERVL 1 580 -4 8 852 807 276 161 8 chr1 35053032 35053404 -162142028 + L1MA7 LINE L1 5855 6283 -8 8 852 310 256 11 0 chr1 35054199 35054289 -162141143 - B4A SINE B4 -199 93 3 8 852 373 154 345 0 chr1 35054365 35054475 -162140957 + MTEa LTR MaLR 232 379 0 8 852 461 84 14 0 chr1 35054487 35054558 -162140874 + (TCTG)n Simple_repeat Simple_repeat 2 73 0 8 852 24 0 0 0 chr1 35055452 35055476 -162139956 + AT_rich Low_complexity Low_complexity 1 24 0 9 852 4557 122 82 43 chr1 35055476 35056271 -162139161 - Lx4A LINE L1 0 7058 6233 9 852 511 53 0 26 chr1 35056435 35056512 -162138920 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 9 852 324 158 0 0 chr1 35056510 35056567 -162138865 + C-rich Low_complexity Low_complexity 6 62 0 9 852 618 132 20 27 chr1 35056576 35056724 -162138708 + CT-rich Low_complexity Low_complexity 1 147 0 9 852 422 317 131 14 chr1 35056799 35057096 -162138336 - L1MEg LINE L1 -4873 1211 880 9 852 544 135 36 63 chr1 35057180 35057291 -162138141 - RLTR11B LTR ERVK -51 402 295 9 852 216 231 0 0 chr1 35057408 35057460 -162137972 + CT-rich Low_complexity Low_complexity 1 52 0 9 852 803 241 24 48 chr1 35057463 35057711 -162137721 - RLTR11B LTR ERVK -211 242 1 9 852 1053 260 18 18 chr1 35057711 35057997 -162137435 - B4A SINE B4 -2 290 5 9 852 5116 153 51 22 chr1 35058244 35058852 -162136580 + Lx5 LINE L1 6117 6737 -313 9 852 279 0 0 0 chr1 35058852 35058883 -162136549 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 852 5116 153 51 22 chr1 35058883 35059182 -162136250 + Lx5 LINE L1 6738 7050 0 9 852 232 253 52 26 chr1 35059241 35059318 -162136114 + MLT1A1 LTR MaLR 319 397 -11 1 852 1165 195 170 77 chr1 35059595 35059972 -162135460 + MTD LTR MaLR 8 419 0 1 852 501 233 41 8 chr1 35060673 35060794 -162134638 + B4A SINE B4 3 127 -165 1 852 210 115 38 19 chr1 35062245 35062298 -162133134 + GA-rich Low_complexity Low_complexity 1 54 0 1 852 879 101 36 12 chr1 35063372 35063623 -162131809 + (TCTA)n Simple_repeat Simple_repeat 1 256 0 1 852 35369 69 8 8 chr1 35063646 35068902 -162126530 - L1Md_F2 LINE L1 -6 6576 1317 1 852 2456 107 132 16 chr1 35068902 35069328 -162126104 + IAPLTR2_Mm LTR ERVK 1 475 0 1 852 35369 81 1 1 chr1 35069328 35070295 -162125137 - L1Md_F2 LINE L1 -4567 1316 350 1 852 495 102 42 17 chr1 35070297 35070417 -162125015 + (TCTA)n Simple_repeat Simple_repeat 3 125 0 1 852 277 297 66 2 chr1 35070595 35070718 -162124714 - MLT2C2 LTR ERVL -153 261 130 1 852 222 213 33 0 chr1 35070993 35071003 -162124429 + (CA)n Simple_repeat Simple_repeat 2 11 0 1 852 278 82 41 0 chr1 35071003 35071052 -162124380 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 1 852 222 213 33 0 chr1 35071052 35071102 -162124330 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 852 225 337 11 11 chr1 35071344 35071437 -162123995 + MIRb SINE MIR 64 156 -112 1 852 437 287 44 2 chr1 35072846 35073001 -162122431 + B4A SINE B4 2 172 -120 1 852 181 93 44 44 chr1 35073104 35073149 -162122283 + (CATA)n Simple_repeat Simple_repeat 1 45 0 1 852 1301 112 0 26 chr1 35073174 35073366 -162122066 - B2_Mm2 SINE B2 -7 188 2 1 852 335 313 13 20 chr1 35073690 35073843 -162121589 + (TATG)n Simple_repeat Simple_repeat 1 152 0 1 852 679 292 82 17 chr1 35075025 35075318 -162120114 + RMER5 LTR ERV1 49 360 -174 1 852 1217 247 74 38 chr1 35075327 35075693 -162119739 - MTE2a LTR MaLR 0 379 1 1 852 447 168 97 19 chr1 35075703 35075806 -162119626 + RMER5 LTR ERV1 421 531 -3 1 852 180 111 0 0 chr1 35076945 35076972 -162118460 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 852 556 291 52 93 chr1 35078313 35078677 -162116755 - MTE2b LTR MaLR -30 349 1 1 852 1595 105 78 18 chr1 35079492 35079773 -162115659 + RLTR9E LTR ERVK 1 298 -111 1 852 387 109 0 0 chr1 35079782 35079837 -162115595 + MTC LTR MaLR 367 421 0 1 852 3438 43 0 0 chr1 35079999 35080395 -162115037 + MTA_Mm LTR MaLR 1 396 0 1 852 2986 83 5 12 chr1 35080435 35080838 -162114594 + MTB LTR MaLR 1 400 0 1 852 556 153 18 18 chr1 35080910 35081023 -162114409 - RMER17C LTR ERVK 0 410 298 1 852 419 308 65 77 chr1 35081305 35081373 -162114059 + MER74A LTR ERVL 6 66 -492 1 852 2216 148 56 23 chr1 35081373 35081767 -162113665 - MTB_Mm LTR MaLR 0 407 1 1 852 419 308 65 77 chr1 35081767 35081944 -162113488 + MER74A LTR ERVL 67 248 -310 1 852 1539 166 223 9 chr1 35082127 35082450 -162112982 + ORR1B1 LTR MaLR 2 393 -1 1 852 253 217 14 42 chr1 35082650 35082722 -162112710 - MTE2a LTR MaLR 0 379 310 1 852 1992 78 0 60 chr1 35083267 35083670 -162111762 + ORR1A2 LTR MaLR 1 338 -8 1 852 628 297 86 9 chr1 35083676 35083897 -162111535 - B4 SINE B4 -54 238 1 1 852 191 95 48 0 chr1 35084162 35084204 -162111228 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 852 429 329 122 13 chr1 35085207 35085444 -162109988 - RMER15 LTR ERVL -14 561 299 1 852 444 274 0 24 chr1 35085769 35085896 -162109536 + ID_B1 SINE B4 2 125 -99 1 852 854 278 104 4 chr1 35085900 35086160 -162109272 + MTE-int LTR MaLR 916 1201 -379 1 852 225 259 150 9 chr1 35086261 35086374 -162109058 - L1M4 LINE L1 -1411 4735 4607 1 852 470 301 98 19 chr1 35086388 35086757 -162108675 - L1M4 LINE L1 -1586 4554 4157 1 852 338 104 0 0 chr1 35086782 35086830 -162108602 - ORR1A4 LTR MaLR -8 321 274 1 852 238 26 51 0 chr1 35086838 35086877 -162108555 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1 852 1064 78 28 0 chr1 35086878 35087019 -162108413 - B1_Mus1 SINE Alu -2 146 2 1 852 1832 92 18 18 chr1 35087019 35087305 -162108127 - ORR1A4 LTR MaLR -43 286 1 1 852 509 303 59 5 chr1 35087310 35087496 -162107936 - L1M4 LINE L1 -2001 4145 3950 1 852 21 0 0 0 chr1 35087506 35087527 -162107905 + AT_rich Low_complexity Low_complexity 1 21 0 1 852 631 244 18 36 chr1 35087544 35087710 -162107722 - RSINE1 SINE B4 0 165 3 1 852 256 308 94 6 chr1 35088231 35088391 -162107041 - MT2A LTR ERVL -7 526 353 1 852 244 111 22 22 chr1 35088460 35088506 -162106926 - MTE2b LTR MaLR -3 376 331 1 852 2258 155 53 0 chr1 35088927 35089301 -162106131 - ORR1B1 LTR MaLR 0 394 1 1 852 38 51 0 0 chr1 35090213 35090272 -162105160 + AT_rich Low_complexity Low_complexity 1 59 0 1 852 216 0 0 0 chr1 35090347 35090371 -162105061 + (T)n Simple_repeat Simple_repeat 1 24 0 1 852 618 294 106 4 chr1 35090894 35091150 -162104282 + B4A SINE B4 7 288 -4 1 852 326 299 37 0 chr1 35091348 35091455 -162103977 + PB1D9 SINE Alu 4 114 -6 1 852 716 62 0 0 chr1 35091618 35091714 -162103718 - B1_Mus2 SINE Alu 0 147 52 1 852 198 0 0 0 chr1 35091761 35091783 -162103649 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 852 873 185 13 0 chr1 35091783 35091940 -162103492 + MT2A LTR ERVL 8 166 -367 1 852 2692 182 51 10 chr1 35091940 35092529 -162102903 - ORR1B1-int LTR MaLR -757 613 1 1 852 1205 206 128 41 chr1 35092529 35092595 -162102837 - ORR1B1 LTR MaLR 0 374 282 1 852 209 33 0 32 chr1 35092595 35092626 -162102806 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1 852 1205 206 128 41 chr1 35092626 35092661 -162102771 - ORR1B1 LTR MaLR -93 281 245 1 852 216 0 0 0 chr1 35092661 35092685 -162102747 + (CAGG)n Simple_repeat Simple_repeat 4 27 0 1 852 1205 206 128 41 chr1 35092685 35092901 -162102531 - ORR1B1 LTR MaLR -130 244 30 1 852 262 302 75 9 chr1 35092939 35093046 -162102386 + L1M3 LINE L1 5006 5119 -1021 1 852 275 169 0 30 chr1 35093680 35093716 -162101716 + C-rich Low_complexity Low_complexity 34 69 0 1 852 414 0 0 0 chr1 35093716 35093762 -162101670 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1 852 275 169 0 30 chr1 35093762 35093792 -162101640 + C-rich Low_complexity Low_complexity 5 33 0 1 852 408 40 0 0 chr1 35094905 35094955 -162100477 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 852 370 237 58 25 chr1 35095426 35095547 -162099885 - MTC LTR MaLR 0 421 297 1 852 21 36 0 0 chr1 35096740 35096768 -162098664 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 443 96 12 0 chr1 35097489 35097572 -162097860 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 852 581 136 0 76 chr1 35097851 35097970 -162097462 + URR1B DNA MER1_type 116 225 0 1 852 24 0 0 0 chr1 35098016 35098040 -162097392 + AT_rich Low_complexity Low_complexity 1 24 0 1 852 576 295 75 26 chr1 35098359 35098624 -162096808 - RLTR42-int LTR ERVK -4121 1401 1124 1 852 37038 68 1 14 chr1 35099585 35105933 -162089499 - L1Md_F2 LINE L1 0 6582 321 1 852 2380 86 6 55 chr1 35105991 35106335 -162089097 + ORR1A2 LTR MaLR 1 327 0 1 852 1790 216 24 17 chr1 35106473 35106883 -162088549 + MTD LTR MaLR 7 419 0 1 852 2686 40 61 0 chr1 35106918 35107244 -162088188 + ORR1A1 LTR MaLR 1 346 0 1 852 197 180 213 0 chr1 35107470 35107531 -162087901 - L2c LINE L2 -208 3179 3106 1 852 387 0 0 0 chr1 35107880 35107923 -162087509 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 852 266 262 94 12 chr1 35108607 35108692 -162086740 - RLTR42-int LTR ERVK -3728 1794 1703 1 852 1348 134 39 0 chr1 35109223 35109455 -162085977 + RMER4B LTR ERVK 1 241 -344 1 852 669 274 57 14 chr1 35110033 35110232 -162085200 + ID_B1 SINE B4 5 214 -10 1 852 450 0 0 0 chr1 35110232 35110282 -162085150 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 852 669 274 57 14 chr1 35110282 35110293 -162085139 + ID_B1 SINE B4 215 224 0 1 852 2136 128 16 0 chr1 35110824 35111144 -162084288 - ORR1A2 LTR MaLR -2 325 1 1 852 740 243 50 17 chr1 35111382 35111562 -162083870 - B4 SINE B4 -12 280 95 1 852 540 254 70 41 chr1 35111608 35111842 -162083590 - Lx8 LINE L1 -1616 6028 5787 1 852 579 231 199 26 chr1 35111895 35112086 -162083346 - Lx6 LINE L1 -4 7456 7233 1 852 1003 301 0 0 chr1 35112086 35112358 -162083074 - Lx8 LINE L1 -147 5733 5462 1 852 647 100 11 0 chr1 35112380 35112470 -162082962 - L1_Mus1 LINE L1 -395 6172 6082 1 852 2754 40 9 0 chr1 35112449 35112777 -162082655 + L1_Mus1 LINE L1 6165 6495 -72 1 852 363 290 0 0 chr1 35112778 35112878 -162082554 + L1MD LINE L1 5637 5736 -506 1 852 564 246 14 14 chr1 35112903 35113043 -162082389 + ORR1E LTR MaLR 2 141 -218 1 852 474 65 0 0 chr1 35113053 35113115 -162082317 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 852 345 215 59 97 chr1 35113116 35113311 -162082121 + ORR1E LTR MaLR 141 351 -28 1 852 386 242 196 6 chr1 35113314 35113472 -162081960 - B3A SINE B2 -10 188 1 1 852 25 31 0 0 chr1 35114272 35114304 -162081128 + AT_rich Low_complexity Low_complexity 1 32 0 1 852 283 218 36 0 chr1 35114315 35114370 -162081062 - RSINE1 SINE B4 -16 149 93 1 852 1268 234 217 27 chr1 35114373 35114954 -162080478 + RMER19A LTR ERVK 3 606 -5 1 852 240 235 161 0 chr1 35114957 35115038 -162080394 - RSINE1 SINE B4 -66 99 6 1 852 334 111 56 0 chr1 35117636 35117708 -162077724 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 1 852 450 0 0 0 chr1 35117716 35117766 -162077666 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 852 405 0 0 0 chr1 35117766 35117810 -162077622 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 852 351 0 0 0 chr1 35117888 35117927 -162077505 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 1 852 1290 175 204 3 chr1 35118227 35118470 -162076962 + Lx9 LINE L1 7233 7498 -146 1 852 315 122 0 0 chr1 35118470 35118519 -162076913 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 852 1290 175 204 3 chr1 35118519 35118618 -162076814 + Lx9 LINE L1 7499 7643 -1 1 852 28176 94 43 4 chr1 35119385 35122204 -162073228 - L1_Mus2 LINE L1 -448 6119 3181 1 852 375 23 0 0 chr1 35122204 35122248 -162073184 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 852 28176 99 51 5 chr1 35122248 35123737 -162071695 - L1_Mus2 LINE L1 -2703 3180 1506 1 852 7771 84 4 17 chr1 35123745 35125247 -162070185 - L1_Mus1 LINE L1 -1 6566 5106 1 852 5499 39 2 0 chr1 35125247 35125887 -162069545 - L1Md_F2 LINE L1 -1 6581 5941 1 852 6544 110 4 47 chr1 35125887 35126110 -162069322 - L1_Mus1 LINE L1 -778 5105 4882 1 106 3055 179 52 60 chr1 35126107 35127422 -162068010 - L1_Mus2 LINE L1 -4365 1518 253 1 853 3157 56 5 8 chr1 35129147 35129544 -162065888 - MTA_Mm LTR MaLR 0 396 1 1 853 281 315 23 16 chr1 35129624 35129753 -162065679 + MER52-int LTR ERV1 6291 6420 -671 1 853 1208 38 6 0 chr1 35130982 35131141 -162064291 + B2_Mm1a SINE B2 1 160 -33 2 853 462 61 0 0 chr1 35131141 35131207 -162064225 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 2 853 369 0 0 0 chr1 35131583 35131624 -162063808 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 853 928 250 9 18 chr1 35131640 35131860 -162063572 - B4A SINE B4 -74 218 1 2 853 479 260 15 8 chr1 35132607 35132739 -162062693 + B1_Mur1 SINE Alu 2 134 -15 2 853 3330 227 105 39 chr1 35133380 35134269 -162061163 - RMER1A Other Other -10 1020 74 2 853 466 380 83 10 chr1 35134441 35134741 -162060691 + RMER13A LTR ERVK 539 860 0 2 853 773 246 40 53 chr1 35134741 35134966 -162060466 + MTEa LTR MaLR 151 372 -7 2 853 830 161 7 0 chr1 35135155 35135310 -162060122 + CT-rich Low_complexity Low_complexity 1 156 0 2 853 768 224 0 7 chr1 35135885 35136029 -162059403 + B1_Mur2 SINE Alu 2 144 -5 2 853 1660 28 9 5 chr1 35137642 35137859 -162057573 - MTA_Mm LTR MaLR 0 396 179 2 853 9111 48 3 1 chr1 35137894 35139687 -162055745 - L1Md_F2 LINE L1 0 6582 4784 2 853 8608 66 1 0 chr1 35139683 35140786 -162054646 + L1Md_F2 LINE L1 3675 4778 -1105 2 853 1355 62 0 15 chr1 35140786 35140981 -162054451 - MTA_Mm LTR MaLR -204 192 1 2 853 23 33 0 0 chr1 35141170 35141200 -162054232 + AT_rich Low_complexity Low_complexity 1 30 0 2 853 626 267 14 99 chr1 35141234 35141410 -162054022 + B3 SINE B2 6 166 -50 2 853 351 0 0 0 chr1 35141410 35141449 -162053983 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 853 626 267 14 99 chr1 35141449 35141484 -162053948 + B3 SINE B2 167 199 -17 2 853 207 162 0 0 chr1 35141491 35141528 -162053904 + CT-rich Low_complexity Low_complexity 1 37 0 2 853 522 139 0 0 chr1 35141535 35141621 -162053811 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 853 2966 43 0 0 chr1 35141727 35142073 -162053359 + ORR1A1 LTR MaLR 1 346 0 2 853 468 0 0 0 chr1 35142484 35142536 -162052896 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 853 261 0 0 0 chr1 35142536 35142564 -162052868 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 853 573 286 105 0 chr1 35142629 35142800 -162052632 - B4 SINE B4 -19 273 85 2 853 634 200 0 13 chr1 35142803 35142873 -162052559 + polypyrimidine Low_complexity Low_complexity 88 157 0 2 853 1371 62 0 0 chr1 35142873 35143051 -162052381 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 853 634 200 0 13 chr1 35143051 35143115 -162052317 + polypyrimidine Low_complexity Low_complexity 25 87 0 2 853 546 16 0 0 chr1 35143115 35143178 -162052254 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 2 853 634 200 0 13 chr1 35143178 35143199 -162052233 + polypyrimidine Low_complexity Low_complexity 4 24 0 2 853 366 256 1 0 chr1 35143200 35143286 -162052146 - B4 SINE B4 -205 87 1 2 853 278 399 35 12 chr1 35143688 35143858 -162051574 + MLT1H1 LTR MaLR 10 183 -372 2 853 247 258 15 15 chr1 35144163 35144230 -162051202 + MLT1H1 LTR MaLR 432 498 -57 2 853 683 294 26 13 chr1 35144739 35144973 -162050459 + L1MA5A LINE L1 5699 5935 -362 2 853 661 132 12 29 chr1 35144987 35145009 -162050423 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 853 243 61 0 0 chr1 35145009 35145042 -162050390 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 853 661 132 12 29 chr1 35145042 35145191 -162050241 + (TA)n Simple_repeat Simple_repeat 1 147 0 2 853 24 32 0 0 chr1 35146080 35146111 -162049321 + AT_rich Low_complexity Low_complexity 1 31 0 2 853 596 14 14 0 chr1 35146362 35146435 -162048997 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 853 402 21 0 0 chr1 35146811 35146858 -162048574 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 853 281 314 112 17 chr1 35147385 35147680 -162047752 + L1MDa LINE L1 1575 1897 -4736 2 853 353 360 26 20 chr1 35147740 35147893 -162047539 + Lx8 LINE L1 7153 7306 -167 2 853 961 255 82 26 chr1 35147911 35147938 -162047494 + MTD LTR MaLR 1 21 -398 2 853 451 0 34 0 chr1 35147938 35147997 -162047435 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 2 853 961 255 82 26 chr1 35147997 35148239 -162047193 + MTD LTR MaLR 22 284 -135 2 853 575 205 33 170 chr1 35148228 35148410 -162047022 + MTD LTR MaLR 185 341 -78 2 853 449 289 96 72 chr1 35148397 35148508 -162046924 - RMER10A LTR ERVL -4 438 329 2 853 1214 123 113 0 chr1 35148508 35148711 -162046721 - URR1A DNA MER1_type 0 226 1 2 853 449 289 96 72 chr1 35148711 35149016 -162046416 - RMER10A LTR ERVL -114 328 12 2 853 333 161 49 13 chr1 35149016 35149107 -162046325 + MTD LTR MaLR 282 421 0 2 853 890 274 9 14 chr1 35149195 35149417 -162046015 + MTD LTR MaLR 1 221 -198 2 853 7841 81 3 6 chr1 35149417 35151168 -162044264 + L1_Mus2 LINE L1 4819 6565 -1 2 853 1045 207 8 71 chr1 35151168 35151407 -162044025 + MTD LTR MaLR 196 419 0 2 853 573 15 0 0 chr1 35151747 35151813 -162043619 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2 853 768 59 0 0 chr1 35152048 35152150 -162043282 + (GAAAA)n Simple_repeat Simple_repeat 3 104 0 2 853 203 179 0 0 chr1 35153086 35153125 -162042307 + A-rich Low_complexity Low_complexity 1 39 0 2 853 1347 220 122 6 chr1 35153354 35153665 -162041767 + Lx5 LINE L1 6704 7050 0 2 853 23 0 0 0 chr1 35153740 35153763 -162041669 + AT_rich Low_complexity Low_complexity 1 23 0 2 853 1459 92 6 142 chr1 35153772 35154090 -162041342 - RLTR10A LTR ERVK 0 411 137 2 853 482 284 14 101 chr1 35154393 35154569 -162040863 - Lx8 LINE L1 -306 7167 7006 2 853 2973 35 3 0 chr1 35154569 35154914 -162040518 + ORR1A1 LTR MaLR 1 346 0 2 853 482 284 14 101 chr1 35154914 35154956 -162040476 - Lx8 LINE L1 -468 7005 6968 2 853 2029 115 14 96 chr1 35155066 35155422 -162040010 - ORR1A2 LTR MaLR 0 327 1 2 853 295 300 78 56 chr1 35155423 35155744 -162039688 + L1MDa LINE L1 2166 2493 -4140 2 853 315 312 102 0 chr1 35156560 35156688 -162038744 + MLT1A0 LTR MaLR 173 313 -52 2 853 404 194 141 10 chr1 35156751 35156850 -162038582 - B3 SINE B2 -100 116 5 2 853 5366 237 84 39 chr1 35157057 35158537 -162036895 - Lx6 LINE L1 -1 7459 5913 2 853 250 239 124 32 chr1 35158577 35158763 -162036669 + L1MDa LINE L1 2432 2634 -3999 2 853 4147 166 30 39 chr1 35158763 35159617 -162035815 + RLTR25A LTR ERVK 1 847 -256 2 853 6175 57 8 0 chr1 35159666 35160423 -162035009 - L1Md_F2 LINE L1 0 6582 5820 2 853 1966 42 0 81 chr1 35160442 35160725 -162034707 - L1Md_F3 LINE L1 -1 6583 6324 2 853 4758 35 5 0 chr1 35160725 35161288 -162034144 + L1Md_F3 LINE L1 5769 6334 -248 2 853 207 0 0 0 chr1 35161294 35161317 -162034115 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 853 396 203 121 8 chr1 35161393 35161517 -162033915 + RLTR25A LTR ERVK 891 1028 0 2 853 580 363 27 15 chr1 35161528 35161791 -162033641 + B4A SINE B4 1 266 -26 2 853 200 333 11 0 chr1 35162209 35162296 -162033136 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 853 1576 282 87 58 chr1 35162330 35163424 -162032008 + L1MDa LINE L1 2625 3750 -2787 2 853 820 158 8 4 chr1 35163541 35163807 -162031625 + (CA)n Simple_repeat Simple_repeat 1 267 0 2 853 516 328 62 26 chr1 35164128 35164545 -162030887 + L1MB7 LINE L1 5677 6108 -76 2 853 2595 158 44 28 chr1 35165929 35166431 -162029001 - RMER19B LTR ERVK 0 902 393 2 853 1490 158 169 6 chr1 35167673 35168010 -162027422 - ORR1B1-int LTR MaLR -887 622 231 2 853 858 222 134 25 chr1 35168001 35168278 -162027154 + ORR1D1 LTR MaLR 68 374 0 2 853 4382 228 122 14 chr1 35168278 35169511 -162025921 + ORR1D1-int LTR MaLR 1 1367 -3 2 853 1435 223 65 25 chr1 35169512 35169867 -162025565 + ORR1D1 LTR MaLR 6 374 0 2 853 1198 62 0 0 chr1 35173122 35173268 -162022164 + B1_Mm SINE Alu 2 147 0 2 853 3005 96 87 8 chr1 35173479 35173972 -162021460 + RLTR47_MM LTR ERV1 1 532 0 2 853 337 314 91 47 chr1 35174345 35174700 -162020732 + MuRRS4-int LTR ERV1 429 809 -6797 2 853 837 311 81 60 chr1 35175011 35175484 -162019948 + MuRRS4-int LTR ERV1 1008 1585 -6016 2 853 4306 129 16 76 chr1 35175529 35176333 -162019099 + RMER6A LTR ERVK 1 756 0 2 853 2208 125 25 0 chr1 35176618 35176937 -162018495 + ORR1A2 LTR MaLR 1 327 0 2 853 530 357 0 13 chr1 35177576 35177735 -162017697 - MTC-int LTR MaLR -339 919 763 2 853 410 186 35 11 chr1 35177775 35177862 -162017570 - RLTR19-int LTR ERVK -5160 977 889 2 853 444 281 48 7 chr1 35177916 35178063 -162017369 - RLTR42-int LTR ERVK -4262 1260 1108 2 853 477 0 0 0 chr1 35178154 35178207 -162017225 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 853 209 186 0 0 chr1 35178750 35178793 -162016639 + (CCA)n Simple_repeat Simple_repeat 1 43 0 2 853 1982 195 70 28 chr1 35181006 35181074 -162014358 - RLTR16 LTR ERVK -15 490 413 2 853 423 0 0 0 chr1 35181074 35181121 -162014311 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 853 375 23 0 0 chr1 35181121 35181164 -162014268 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 853 1982 195 70 28 chr1 35181164 35181242 -162014190 - RLTR16 LTR ERVK -93 412 325 2 853 297 0 0 0 chr1 35181242 35181275 -162014157 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 853 1982 195 70 28 chr1 35181275 35181310 -162014122 - RLTR16 LTR ERVK -181 324 287 2 853 2908 33 0 3 chr1 35181310 35181648 -162013784 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 853 1982 195 70 28 chr1 35181648 35181933 -162013499 - RLTR16 LTR ERVK -219 286 3 2 853 552 286 125 45 chr1 35186435 35186667 -162008765 - L1MA9 LINE L1 -3 6309 6048 2 853 1473 54 0 21 chr1 35186667 35186856 -162008576 - B2_Mm2 SINE B2 -9 186 2 2 853 552 286 125 45 chr1 35186856 35187136 -162008296 - L1MA9 LINE L1 -265 6047 5756 2 853 372 70 0 53 chr1 35187215 35187291 -162008141 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 2 853 1037 106 21 0 chr1 35187291 35187433 -162007999 - B1_Mus1 SINE Alu -3 145 1 2 853 225 183 267 0 chr1 35187433 35187493 -162007939 - L1MA9 LINE L1 -676 5615 5540 2 853 300 65 0 101 chr1 35187560 35187629 -162007803 - L1Md_F2 LINE L1 0 6582 6521 2 853 33015 100 14 16 chr1 35187629 35193051 -162002381 - L1Md_F2 LINE L1 -253 5630 208 2 853 405 0 0 0 chr1 35193077 35193122 -162002310 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 853 657 298 83 40 chr1 35193168 35193348 -162002084 - B4A SINE B4 -23 269 77 2 853 3844 27 67 0 chr1 35193348 35193793 -162001639 + MT2C_Mm LTR ERVL 1 475 0 2 853 657 298 83 40 chr1 35193793 35193864 -162001568 - B4A SINE B4 -216 76 7 2 853 567 0 0 0 chr1 35197180 35197243 -161998189 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 853 507 33 0 0 chr1 35197243 35197303 -161998129 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 853 505 270 166 57 chr1 35197328 35197575 -161997857 - B4 SINE B4 -18 274 1 2 853 409 231 0 0 chr1 35198501 35198592 -161996840 - L1MB3 LINE L1 -3 6180 6090 2 853 189 151 37 19 chr1 35198763 35198817 -161996615 + GA-rich Low_complexity Low_complexity 1 55 0 2 853 601 290 167 62 chr1 35199021 35199065 -161996367 + ORR1E LTR MaLR 1 43 -316 2 853 2845 176 24 27 chr1 35199065 35199649 -161995783 - Lx2B LINE L1 -4 6996 6415 2 853 601 290 167 62 chr1 35199649 35199927 -161995505 + ORR1E LTR MaLR 44 357 -2 2 853 1552 280 88 18 chr1 35200339 35200895 -161994537 + Lx8 LINE L1 6867 7461 -12 2 853 1452 246 43 60 chr1 35202200 35202608 -161992824 - MTD LTR MaLR -1 418 17 2 853 264 59 0 0 chr1 35202608 35202642 -161992790 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 853 1452 246 43 60 chr1 35202642 35202653 -161992779 - MTD LTR MaLR -403 16 6 2 853 324 304 16 8 chr1 35202653 35202779 -161992653 - L1MA6 LINE L1 -248 6052 5926 3 853 211 121 0 0 chr1 35202783 35202816 -161992616 + B4 SINE B4 11 43 -249 3 853 342 305 164 22 chr1 35202830 35203055 -161992377 - Ricksha_c DNA MuDR -1406 642 386 3 853 523 269 90 131 chr1 35203101 35203413 -161992019 + MTD LTR MaLR 3 301 -78 3 853 850 247 26 94 chr1 35203413 35203924 -161991508 + RLTR11B LTR ERVK 1 494 -34 3 853 226 152 217 17 chr1 35203960 35204020 -161991412 + MTD LTR MaLR 334 405 -14 3 853 1281 78 0 0 chr1 35204451 35204630 -161990802 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 853 222 217 22 0 chr1 35204631 35204677 -161990755 + CT-rich Low_complexity Low_complexity 2 48 0 3 853 366 327 106 16 chr1 35204717 35204972 -161990460 - B4A SINE B4 -14 278 1 3 853 261 0 0 0 chr1 35204982 35205011 -161990421 + (T)n Simple_repeat Simple_repeat 1 29 0 3 853 302 115 19 0 chr1 35205756 35205808 -161989624 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 853 698 211 176 42 chr1 35205812 35206005 -161989427 - ID_B1 SINE B4 -4 220 2 3 853 235 329 117 55 chr1 35207071 35207328 -161988104 + MLT1L LTR MaLR 319 591 -19 3 853 490 233 28 76 chr1 35207595 35207739 -161987693 - B3A SINE B2 -54 144 8 3 853 196 171 61 0 chr1 35208406 35208488 -161986944 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 853 586 271 24 54 chr1 35208571 35208739 -161986693 - RSINE1 SINE B4 0 165 3 3 853 424 0 0 35 chr1 35208816 35208874 -161986558 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 3 853 291 111 0 0 chr1 35209399 35209444 -161985988 + RMER17C LTR ERVK 286 330 -80 3 853 453 36 0 0 chr1 35209461 35209516 -161985916 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 853 243 290 29 0 chr1 35209534 35209603 -161985829 - RSINE1 SINE B4 -2 163 93 3 853 450 0 0 0 chr1 35209977 35210027 -161985405 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 853 650 282 110 8 chr1 35210161 35210397 -161985035 - RMER15 LTR ERVL -53 522 263 3 853 238 167 82 16 chr1 35210439 35210500 -161984932 - RMER15 LTR ERVL -448 127 63 3 853 398 296 7 94 chr1 35210563 35210634 -161984798 - B3A SINE B2 -34 164 98 3 853 1349 251 51 41 chr1 35210634 35211049 -161984383 + MTD LTR MaLR 1 419 0 3 853 398 296 7 94 chr1 35211049 35211115 -161984317 - B3A SINE B2 -101 97 39 3 853 1340 246 128 17 chr1 35211116 35211170 -161984262 - MT2A LTR ERVL 0 533 480 3 853 537 16 0 0 chr1 35211170 35211232 -161984200 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 853 1340 246 128 17 chr1 35211232 35211551 -161983881 - MT2A LTR ERVL -54 479 123 3 853 351 0 0 0 chr1 35211551 35211590 -161983842 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 853 1340 246 128 17 chr1 35211590 35211629 -161983803 - MT2A LTR ERVL -411 122 76 3 853 34587 4 0 0 chr1 35211630 35215470 -161979962 + L1Md_A LINE L1 1747 5586 -297 3 853 9239 1 0 0 chr1 35215470 35216466 -161978966 + L1Md_A LINE L1 5587 6582 0 3 853 293 316 0 0 chr1 35216476 35216555 -161978877 - MTE2b LTR MaLR -298 81 3 3 853 450 333 4 106 chr1 35216709 35216845 -161978587 - B4 SINE B4 -81 211 89 3 853 2130 182 71 88 chr1 35216845 35217382 -161978050 - RLTR11A LTR ERVK 0 528 1 3 853 450 333 4 106 chr1 35217382 35217480 -161977952 - B4 SINE B4 -204 88 1 3 853 274 208 101 25 chr1 35217609 35217688 -161977744 - B4A SINE B4 -207 85 1 3 853 339 178 20 10 chr1 35218003 35218105 -161977327 + GA-rich Low_complexity Low_complexity 2 104 0 3 853 474 229 158 15 chr1 35218888 35219021 -161976411 - B3A SINE B2 -36 162 11 3 853 196 175 16 16 chr1 35220233 35220297 -161975135 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 3 853 373 283 92 30 chr1 35220359 35220523 -161974909 - B4A SINE B4 -118 174 1 3 853 8895 54 1 2 chr1 35220550 35222324 -161973108 - L1Md_F2 LINE L1 -11 6571 4799 3 853 9449 50 0 0 chr1 35222324 35223487 -161971945 + L1Md_F2 LINE L1 3629 4791 -1092 3 853 226 316 0 0 chr1 35223562 35223619 -161971813 + (TATG)n Simple_repeat Simple_repeat 4 60 0 3 853 241 303 65 50 chr1 35223721 35223860 -161971572 - MLT1F-int LTR MaLR -1 1488 1348 3 853 2452 89 41 3 chr1 35224366 35224758 -161970674 - BGLII LTR ERVK 0 421 15 3 853 289 238 18 82 chr1 35225001 35225111 -161970321 - PB1D10 SINE Alu -6 111 9 3 853 258 192 0 0 chr1 35225587 35225639 -161969793 + MTE2a LTR MaLR 1 52 -327 3 853 235 283 34 102 chr1 35226373 35226491 -161968941 + MTE2a LTR MaLR 150 259 -120 3 853 709 209 106 10 chr1 35226769 35226977 -161968455 - RMER15 LTR ERVL 0 575 348 3 853 255 292 0 0 chr1 35227043 35227115 -161968317 - L1M5 LINE L1 -1611 4535 4464 3 853 693 0 0 0 chr1 35227365 35227442 -161967990 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 853 335 281 96 10 chr1 35227442 35227546 -161967886 - ID_B1 SINE B4 -32 192 80 3 853 22 0 0 0 chr1 35230087 35230109 -161965323 + AT_rich Low_complexity Low_complexity 1 22 0 3 853 427 297 92 43 chr1 35230141 35230489 -161964943 - L1M5 LINE L1 -3072 3074 2710 3 853 3102 84 7 0 chr1 35230902 35231306 -161964126 + MTB_Mm LTR MaLR 1 407 0 3 853 1991 158 29 0 chr1 35231635 35231984 -161963448 + ORR1C1 LTR MaLR 3 361 -17 3 853 1566 89 18 5 chr1 35232115 35232364 -161963068 + IAPEY2_LTR LTR ERVK 60 294 -63 3 853 237 259 49 12 chr1 35232375 35232457 -161962975 - L1M5 LINE L1 -3828 2318 2234 3 853 239 200 33 0 chr1 35232510 35232570 -161962862 - L1M5 LINE L1 -279 5894 5833 3 853 943 222 69 38 chr1 35232665 35232787 -161962645 - MTEa LTR MaLR -109 270 147 3 853 3578 15 2 0 chr1 35232787 35233182 -161962250 - MTA_Mm LTR MaLR 0 396 1 3 853 943 222 69 38 chr1 35233182 35233321 -161962111 - MTEa LTR MaLR -233 146 1 3 853 266 194 111 0 chr1 35233623 35233695 -161961737 - RMER1A Other Other -11 1019 940 3 853 1675 276 55 1 chr1 35233661 35234471 -161960961 - RMER1A Other Other -588 442 1 3 853 1058 265 124 45 chr1 35234688 35235107 -161960325 - RMER13A LTR ERVK -395 465 14 3 853 1244 277 77 64 chr1 35235170 35235637 -161959795 - RMER1B Other Other -549 517 45 3 853 735 256 93 9 chr1 35235971 35236196 -161959236 + Lx7 LINE L1 5660 5903 -1793 3 853 981 249 13 4 chr1 35236308 35236538 -161958894 + MTD LTR MaLR 1 232 -187 3 853 3236 58 0 2 chr1 35236545 35236942 -161958490 - MTA_Mm LTR MaLR 0 396 1 3 853 2487 301 134 25 chr1 35236990 35238245 -161957187 + Lx8 LINE L1 6047 7437 -36 3 853 2220 158 17 45 chr1 35238271 35238734 -161956698 + RCHARR1 DNA MER1_type 483 932 -42 3 853 1064 129 6 0 chr1 35238734 35238904 -161956528 - RMER6D LTR ERVK 0 690 520 3 853 204 40 0 0 chr1 35238917 35238942 -161956490 + (TTC)n Simple_repeat Simple_repeat 1 25 0 3 853 1210 87 0 6 chr1 35238942 35239115 -161956317 - B2_Mm2 SINE B2 -22 173 2 3 853 1679 152 129 89 chr1 35239115 35239625 -161955807 - RMER6D LTR ERVK -189 531 1 3 853 261 149 21 0 chr1 35239625 35239671 -161955761 + RCHARR1 DNA MER1_type 927 973 -1 3 853 479 256 0 49 chr1 35240099 35240222 -161955210 + ORR1E LTR MaLR 1 117 -242 3 853 260 228 53 32 chr1 35240284 35240379 -161955053 + ORR1E LTR MaLR 276 372 -7 3 853 319 98 33 0 chr1 35241566 35241627 -161953805 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 853 746 277 66 62 chr1 35241777 35242050 -161953382 + Lx8 LINE L1 7163 7436 -37 3 853 945 267 164 6 chr1 35242051 35242398 -161953034 + MTD LTR MaLR 18 419 0 3 853 3220 38 8 10 chr1 35242700 35243096 -161952336 - MTA_Mm LTR MaLR -1 395 1 3 853 462 313 86 50 chr1 35243442 35243825 -161951607 + L1ME3 LINE L1 5599 5995 -169 3 853 381 259 30 143 chr1 35243886 35244117 -161951315 + MTD LTR MaLR 1 297 -82 3 853 332 94 0 19 chr1 35244419 35244473 -161950959 - HAL1-3A_ME LINE L1 -831 2027 1975 3 853 492 232 0 38 chr1 35244493 35244677 -161950755 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 3 853 378 238 28 9 chr1 35245246 35245352 -161950080 - MTE2b LTR MaLR -271 108 1 3 853 2396 50 0 12 chr1 35245530 35245853 -161949579 - ORR1A2 LTR MaLR -8 319 1 3 853 32 26 0 0 chr1 35245889 35245928 -161949504 + AT_rich Low_complexity Low_complexity 1 39 0 3 853 477 312 21 14 chr1 35245972 35246112 -161949320 - RSINE1 SINE B4 -14 151 11 3 853 240 35 0 0 chr1 35246168 35246197 -161949235 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 853 809 258 35 25 chr1 35246210 35246409 -161949023 - B4 SINE B4 -4 288 88 3 853 1203 247 67 67 chr1 35246834 35247221 -161948211 - MTD LTR MaLR -12 407 21 3 853 22 35 0 0 chr1 35247696 35247725 -161947707 + AT_rich Low_complexity Low_complexity 1 29 0 3 853 1026 293 17 14 chr1 35248120 35248407 -161947025 + B4 SINE B4 5 292 0 3 853 446 338 7 28 chr1 35248469 35248532 -161946900 + ID SINE ID 18 77 -147 3 853 215 337 0 88 chr1 35248532 35248623 -161946809 + PB1D10 SINE Alu 1 83 -34 3 853 777 215 75 6 chr1 35249365 35249538 -161945894 - MTE2a LTR MaLR 0 379 195 3 853 243 0 0 0 chr1 35249707 35249734 -161945698 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 853 257 339 15 107 chr1 35250153 35250358 -161945074 - MTE2a LTR MaLR -235 186 1 3 853 4333 56 41 7 chr1 35250858 35251400 -161944032 - LTRIS2 LTR ERV1 0 564 5 3 853 1609 189 51 53 chr1 35251406 35251557 -161943875 + MTC LTR MaLR 40 197 -224 3 853 1385 94 21 0 chr1 35251557 35251748 -161943684 + B2_Mm2 SINE B2 1 195 0 3 853 1609 189 51 53 chr1 35251748 35251970 -161943462 + MTC LTR MaLR 198 412 -9 3 853 246 95 0 0 chr1 35252281 35252323 -161943109 + (A)n Simple_repeat Simple_repeat 1 42 0 3 853 360 193 34 11 chr1 35252902 35252991 -161942441 - MTE2a LTR MaLR -226 153 63 3 853 218 339 22 52 chr1 35253237 35253371 -161942061 - MIRb SINE MIR -36 232 103 3 853 526 188 0 0 chr1 35254150 35254246 -161941186 + B1_Mus2 SINE Alu 2 97 -50 3 853 1156 239 63 60 chr1 35256267 35256632 -161938800 + ORR1D2 LTR MaLR 5 370 0 3 853 427 236 39 39 chr1 35256870 35257021 -161938411 - MTD LTR MaLR 0 421 281 3 853 368 134 300 67 chr1 35257059 35257179 -161938253 - B2_Mm2 SINE B2 -1 194 47 3 853 1113 87 12 0 chr1 35257211 35257372 -161938060 - B2_Mm1t SINE B2 -14 179 17 3 853 407 224 0 39 chr1 35257500 35257602 -161937830 - PB1D10 SINE Alu -1 116 19 3 854 550 58 11 11 chr1 35259050 35259138 -161936294 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 854 630 263 119 15 chr1 35259898 35260099 -161935333 + ID_B1 SINE B4 1 222 -2 4 854 982 292 100 39 chr1 35260101 35260693 -161934739 - L1MC3 LINE L1 -16 7769 7142 4 854 360 0 0 0 chr1 35261243 35261283 -161934149 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 854 469 256 25 17 chr1 35261307 35261426 -161934006 - RSINE1 SINE B4 -43 122 3 4 854 982 321 31 20 chr1 35261544 35261894 -161933538 + Lx8 LINE L1 6962 7315 -158 4 854 195 218 0 0 chr1 35261907 35261962 -161933470 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 854 4145 66 4 0 chr1 35262133 35262634 -161932798 + RLTR1C LTR ERV1 1 503 0 4 854 2649 161 24 52 chr1 35262634 35263171 -161932261 + MMVL30-int LTR ERV1 1 522 -7034 4 854 5089 96 3 1 chr1 35263644 35264325 -161931107 + MMVL30-int LTR ERV1 772 1453 -2245 4 854 253 101 182 104 chr1 35264409 35264486 -161930946 + MMVL30-int LTR ERV1 960 1042 -2257 4 854 595 156 34 12 chr1 35264496 35264688 -161930744 + MMVL30-int LTR ERV1 1021 1184 -2115 4 854 2866 83 12 44 chr1 35264958 35265053 -161930379 + MMVL30-int LTR ERV1 1496 1590 -2108 4 854 3967 28 2 0 chr1 35265053 35265510 -161929922 + L1Md_T LINE L1 6125 6582 0 4 854 2866 130 116 30 chr1 35265510 35266349 -161929083 + MMVL30-int LTR ERV1 1591 2231 -1467 4 854 673 282 44 43 chr1 35266345 35266641 -161928791 + MMVL30-int LTR ERV1 4100 4563 -3215 4 854 1544 82 194 93 chr1 35266947 35267334 -161928098 + RLTR1B-int LTR ERV1 2874 3299 0 4 854 4350 38 6 0 chr1 35267334 35267834 -161927598 + RLTR1C LTR ERV1 1 503 0 4 854 329 285 59 75 chr1 35267840 35268026 -161927406 + L1MA7 LINE L1 6107 6289 -2 4 854 900 300 10 75 chr1 35268407 35268499 -161926933 + B4 SINE B4 5 87 -205 4 854 1087 109 106 28 chr1 35268499 35268679 -161926753 + B2_Mm2 SINE B2 2 195 0 4 854 900 300 10 75 chr1 35268679 35268892 -161926540 + B4 SINE B4 88 290 -2 4 854 756 0 0 0 chr1 35269683 35269767 -161925665 + (TTC)n Simple_repeat Simple_repeat 1 84 0 4 854 295 337 109 15 chr1 35270453 35270655 -161924777 - RMER15 LTR ERVL -8 567 347 4 854 234 0 0 0 chr1 35271011 35271037 -161924395 + (T)n Simple_repeat Simple_repeat 1 26 0 4 854 2100 211 139 59 chr1 35271109 35271941 -161923491 + RMER13B LTR ERVK 1 899 -9 4 854 498 288 88 63 chr1 35272686 35272971 -161922461 + MLT1B LTR MaLR 77 368 -22 4 854 514 141 40 0 chr1 35273799 35273898 -161921534 - URR1A DNA MER1_type -47 179 77 4 854 959 92 7 0 chr1 35274228 35274369 -161921063 - LTRIS2 LTR ERV1 0 564 423 4 854 216 91 64 64 chr1 35274507 35274554 -161920878 - PB1D10 SINE Alu 0 117 71 4 854 684 322 33 0 chr1 35274512 35274723 -161920709 - ID_B1 SINE B4 -2 222 5 4 854 1401 103 242 71 chr1 35275142 35275423 -161920009 + ORR1A4 LTR MaLR 1 329 0 4 854 4163 120 81 2 chr1 35275498 35276126 -161919306 + RLTR33 LTR ERVK 1 678 0 4 854 309 252 141 0 chr1 35276222 35276321 -161919111 - RLTR18 LTR ERVK -133 483 371 4 854 1746 203 69 25 chr1 35276583 35277018 -161918414 + RLTR20D LTR ERVK 51 568 0 4 854 329 208 89 118 chr1 35277018 35277044 -161918388 - RLTR18 LTR ERVK -430 186 159 4 854 4104 60 55 13 chr1 35277044 35277585 -161917847 - LTRIS2 LTR ERV1 0 564 1 4 854 329 208 89 118 chr1 35277585 35277727 -161917705 - RLTR18 LTR ERVK -458 158 23 4 854 369 0 0 0 chr1 35277908 35277949 -161917483 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 854 1144 237 55 76 chr1 35278812 35279132 -161916300 + MTEb LTR MaLR 2 329 -50 4 854 798 137 7 7 chr1 35279132 35279279 -161916153 + Lx4A LINE L1 6912 7058 0 4 854 1144 237 55 76 chr1 35279279 35279341 -161916091 + MTEb LTR MaLR 330 376 -3 4 854 2713 118 37 7 chr1 35280187 35280595 -161914837 + MTC LTR MaLR 1 420 -1 4 854 230 305 101 55 chr1 35280686 35281272 -161914160 - L1M5 LINE L1 -1314 4832 4220 4 854 238 359 7 59 chr1 35281527 35281663 -161913769 - B1F SINE Alu 0 149 21 4 854 408 127 0 0 chr1 35281852 35281915 -161913517 - ORR1C1 LTR MaLR -8 370 308 4 854 9162 50 0 28 chr1 35281915 35283096 -161912336 - L1Md_F2 LINE L1 -496 5387 4240 4 854 1937 36 0 0 chr1 35283074 35283296 -161912136 + L1Md_F2 LINE L1 5365 5586 -297 4 854 8208 52 1 1 chr1 35283296 35284292 -161911140 + L1Md_F2 LINE L1 5587 6582 0 4 854 1633 152 13 19 chr1 35284292 35284608 -161910824 - ORR1C1 LTR MaLR -63 315 2 4 854 305 284 25 0 chr1 35284643 35284724 -161910708 - MT2A LTR ERVL -108 425 343 4 854 895 298 19 51 chr1 35284718 35285089 -161910343 - MT2A LTR ERVL -98 435 77 4 854 228 289 88 11 chr1 35285343 35285434 -161909998 - L1MC LINE L1 -3396 2750 2653 4 854 426 297 27 29 chr1 35285448 35285609 -161909823 - ID_B1 SINE B4 -76 216 53 4 854 1582 218 65 0 chr1 35285705 35286091 -161909341 + MTD LTR MaLR 9 419 0 4 854 2148 113 0 112 chr1 35286191 35286558 -161908874 + ORR1A3 LTR MaLR 1 326 0 4 854 384 282 30 50 chr1 35286898 35287096 -161908336 - L1M2 LINE L1 -685 5615 5422 4 854 417 20 0 0 chr1 35287385 35287435 -161907997 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 854 471 35 0 0 chr1 35287436 35287493 -161907939 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 854 360 266 35 21 chr1 35288459 35288601 -161906831 - RMER15 LTR ERVL -67 508 365 4 854 1861 269 92 20 chr1 35289448 35290529 -161904903 - L1MC LINE L1 -666 5667 4518 4 854 772 179 15 96 chr1 35290560 35290758 -161904674 - RLTR40 LTR ERVK -492 325 144 4 854 3117 76 17 113 chr1 35290842 35291375 -161904057 + RLTR45 LTR ERVK 1 482 0 4 854 1391 232 23 30 chr1 35291578 35292204 -161903228 - RLTR18B LTR ERVK -89 527 1 4 854 3561 164 73 45 chr1 35292275 35293010 -161902422 - RMER6A LTR ERVK 0 756 1 4 854 732 231 5 84 chr1 35293123 35293336 -161902096 + B3A SINE B2 1 196 -2 4 854 626 231 51 60 chr1 35293668 35293884 -161901548 - RMER15 LTR ERVL 0 575 362 4 854 517 225 21 48 chr1 35293851 35293996 -161901436 - RMER15 LTR ERVL -376 199 59 4 854 32 0 0 0 chr1 35295604 35295636 -161899796 + AT_rich Low_complexity Low_complexity 1 32 0 4 854 737 261 23 41 chr1 35295644 35295834 -161899598 + B3 SINE B2 1 188 -28 4 854 198 0 0 0 chr1 35295834 35295856 -161899576 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 4 854 737 261 23 41 chr1 35295856 35295885 -161899547 + B3 SINE B2 189 216 0 4 854 964 296 49 24 chr1 35296305 35296675 -161898757 - MTE2a LTR MaLR 0 379 1 4 854 28 0 0 0 chr1 35297124 35297152 -161898280 + AT_rich Low_complexity Low_complexity 1 28 0 4 854 201 281 0 0 chr1 35297297 35297393 -161898039 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 854 543 319 25 64 chr1 35297427 35297631 -161897801 - B4A SINE B4 -87 205 10 4 854 342 234 32 11 chr1 35297800 35297895 -161897537 - Lx4B LINE L1 -4 7054 6958 4 854 335 213 40 0 chr1 35297948 35298023 -161897409 - ID4_ SINE ID -3 80 3 4 854 235 303 134 15 chr1 35298206 35298340 -161897092 - L1MA5 LINE L1 -6 6294 6145 4 854 394 298 41 8 chr1 35300903 35301025 -161894407 + B4A SINE B4 139 264 -28 4 854 216 0 0 0 chr1 35301124 35301148 -161894284 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 854 333 0 0 0 chr1 35301148 35301184 -161894248 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 854 423 0 0 0 chr1 35302329 35302376 -161893056 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 854 469 275 68 34 chr1 35303077 35303254 -161892178 + Lx8 LINE L1 6932 7114 -359 4 854 227 315 14 0 chr1 35303333 35303406 -161892026 + RMER15 LTR ERVL 389 462 -113 4 854 268 266 0 30 chr1 35303437 35303569 -161891863 + (CATA)n Simple_repeat Simple_repeat 4 131 0 4 854 317 181 13 77 chr1 35303573 35303651 -161891781 + HAL1-3A_ME LINE L1 1976 2048 -810 4 854 207 0 0 0 chr1 35303846 35303869 -161891563 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 854 216 228 0 0 chr1 35303869 35303926 -161891506 + (CG)n Simple_repeat Simple_repeat 1 57 0 4 854 518 259 29 71 chr1 35303963 35304133 -161891299 - B4 SINE B4 -42 250 88 4 854 693 289 64 26 chr1 35304438 35304705 -161890727 - MTE2a LTR MaLR 0 379 103 4 854 318 243 14 0 chr1 35304720 35304790 -161890642 - MTE2a LTR MaLR -249 130 60 4 854 2523 18 0 0 chr1 35304790 35305071 -161890361 + L1Md_F2 LINE L1 5306 5586 -297 4 854 8441 36 4 0 chr1 35305071 35306063 -161889369 + L1Md_F2 LINE L1 5587 6582 0 4 854 265 273 35 26 chr1 35306064 35306177 -161889255 - MTD LTR MaLR -305 114 1 4 854 602 243 0 20 chr1 35306734 35306881 -161888551 + B3A SINE B2 1 144 -54 4 854 315 222 42 0 chr1 35306957 35307029 -161888403 - RSINE1 SINE B4 -2 163 89 4 854 1357 235 57 153 chr1 35307109 35307722 -161887710 + RMER15 LTR ERVL 22 575 0 4 854 3899 86 29 0 chr1 35308400 35308923 -161886509 - L1_Mus4 LINE L1 -7 6629 6092 4 854 6704 193 52 36 chr1 35309562 35310135 -161885297 - Lx5 LINE L1 -5 7045 6438 4 854 912 44 0 0 chr1 35310135 35310248 -161885184 + (TC)n Simple_repeat Simple_repeat 1 113 0 4 854 6704 168 30 30 chr1 35310248 35311743 -161883689 - Lx5 LINE L1 -613 6437 4036 4 854 567 224 128 0 chr1 35311775 35311931 -161883501 - MTE2b LTR MaLR -60 319 144 4 854 466 221 71 0 chr1 35311957 35312027 -161883405 + RLTR20A2 LTR ERVK 411 488 -90 4 854 360 0 0 0 chr1 35312027 35312067 -161883365 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 854 466 221 71 0 chr1 35312067 35312109 -161883323 + RLTR20A2 LTR ERVK 489 530 -48 4 854 672 327 68 8 chr1 35312613 35312863 -161882569 + B4A SINE B4 14 278 -14 4 854 390 152 0 0 chr1 35313268 35313360 -161882072 + A-rich Low_complexity Low_complexity 1 92 0 4 854 686 239 138 60 chr1 35313763 35313995 -161881437 - MTD LTR MaLR -169 250 1 4 854 210 262 98 24 chr1 35313995 35314035 -161881397 - B1F SINE Alu -63 86 41 4 854 678 257 57 117 chr1 35314862 35315076 -161880356 + B4 SINE B4 1 217 -75 4 854 186 43 0 0 chr1 35315076 35315099 -161880333 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 854 678 257 57 117 chr1 35315099 35315166 -161880266 + B4 SINE B4 218 265 -27 4 854 258 81 0 0 chr1 35315166 35315203 -161880229 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 854 264 59 0 0 chr1 35315233 35315267 -161880165 + (GGA)n Simple_repeat Simple_repeat 3 36 0 4 854 1140 124 0 0 chr1 35315771 35315949 -161879483 + (TC)n Simple_repeat Simple_repeat 2 179 0 4 854 980 162 6 3 chr1 35315960 35316276 -161879156 + CT-rich Low_complexity Low_complexity 1 316 0 4 854 501 191 515 36 chr1 35316830 35316955 -161878477 + ORR1C2 LTR MaLR 1 180 -198 4 854 245 102 41 0 chr1 35316955 35317004 -161878428 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 854 369 185 64 156 chr1 35317004 35317090 -161878342 + ORR1C2 LTR MaLR 181 269 -115 4 854 1855 240 47 70 chr1 35317103 35318079 -161877353 + RMER13B LTR ERVK 2 899 -9 4 854 624 195 0 0 chr1 35318091 35318204 -161877228 + ORR1C2 LTR MaLR 272 384 0 4 854 720 259 86 19 chr1 35318759 35318968 -161876464 - ID_B1 SINE B4 0 224 2 4 854 3428 18 15 0 chr1 35319339 35319729 -161875703 + MTA_Mm LTR MaLR 1 396 0 4 854 277 283 10 29 chr1 35320195 35320297 -161875135 - RLTR42-int LTR ERVK -4122 1400 1301 5 854 1158 122 0 0 chr1 35320653 35320833 -161874599 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 854 804 282 85 11 chr1 35320837 35321109 -161874323 - B4 SINE B4 0 292 1 5 854 405 0 0 0 chr1 35322546 35322591 -161872841 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 854 279 0 0 0 chr1 35322591 35322621 -161872811 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 854 840 265 181 6 chr1 35322688 35323016 -161872416 + MTEa LTR MaLR 1 379 0 5 854 486 0 0 0 chr1 35323816 35323870 -161871562 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 854 630 193 227 0 chr1 35324001 35324177 -161871255 + B3 SINE B2 1 216 0 5 854 366 42 0 0 chr1 35325054 35325102 -161870330 + (TTG)n Simple_repeat Simple_repeat 2 49 0 5 854 21 0 0 0 chr1 35325161 35325182 -161870250 + AT_rich Low_complexity Low_complexity 1 21 0 5 854 667 257 37 64 chr1 35325414 35325601 -161869831 + B3A SINE B2 1 182 -16 5 854 378 309 0 9 chr1 35325817 35325928 -161869504 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 854 353 217 0 92 chr1 35326127 35326279 -161869153 + G-rich Low_complexity Low_complexity 18 155 0 5 854 233 325 70 0 chr1 35326279 35326393 -161869039 - RSINE1 SINE B4 -9 156 35 5 854 193 210 16 16 chr1 35326946 35327009 -161868423 + (CATA)n Simple_repeat Simple_repeat 4 66 0 5 854 1179 255 62 34 chr1 35327254 35327607 -161867825 - ERVL-B4-int LTR ERVL -1325 4389 4027 5 854 512 207 8 0 chr1 35327619 35327740 -161867692 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 854 3842 30 5 0 chr1 35327815 35328249 -161867183 + RLTR10C LTR ERVK 1 436 0 5 854 2081 64 11 4 chr1 35328249 35328514 -161866918 + MMERVK10C-int LTR ERVK 1 267 -7314 5 854 257 143 57 45 chr1 35328596 35328684 -161866748 + GA-rich Low_complexity Low_complexity 3 91 0 5 854 349 89 0 0 chr1 35328685 35328730 -161866702 + MMERVK10C-int LTR ERVK 93 137 -6405 5 854 1990 43 0 2 chr1 35328733 35329168 -161866264 + MMERVK10C-int LTR ERVK 652 887 -1100 5 854 8160 32 0 0 chr1 35329161 35330084 -161865348 + MMERVK10C-int LTR ERVK 4790 5712 -1869 5 854 7330 35 8 53 chr1 35330087 35331022 -161864410 + MMERVK10C-int LTR ERVK 6690 7581 0 5 854 3349 51 8 107 chr1 35331022 35331506 -161863926 + RLTR10C LTR ERVK 1 436 0 5 854 616 345 42 22 chr1 35332090 35332564 -161862868 - ERVL-B4-int LTR ERVL -4270 1487 963 5 854 1047 276 160 30 chr1 35332594 35333057 -161862375 + RMER5 LTR ERV1 1 523 -11 5 854 302 284 64 9 chr1 35333064 35333174 -161862258 - ERVL-B4-int LTR ERVL -4818 849 734 5 854 212 163 0 0 chr1 35333445 35333488 -161861944 + A-rich Low_complexity Low_complexity 1 43 0 5 854 228 35 0 0 chr1 35333494 35333523 -161861909 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 854 321 269 72 80 chr1 35333544 35333703 -161861729 + B4 SINE B4 121 292 0 5 854 256 31 0 0 chr1 35334008 35334040 -161861392 - U6 snRNA snRNA -71 36 5 5 854 1291 210 73 127 chr1 35334079 35334380 -161861052 - RMER4B LTR ERVK -147 438 160 5 854 207 0 0 0 chr1 35334380 35334403 -161861029 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 854 1291 210 73 127 chr1 35334403 35334564 -161860868 - RMER4B LTR ERVK -426 159 1 5 854 584 326 102 15 chr1 35334656 35334921 -161860511 + Lx8 LINE L1 7153 7440 -33 5 854 212 164 0 32 chr1 35335521 35335584 -161859848 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 5 854 362 298 11 11 chr1 35335585 35335680 -161859752 - RSINE1 SINE B4 0 165 71 5 854 270 317 0 12 chr1 35335839 35335922 -161859510 + CT-rich Low_complexity Low_complexity 2 83 0 5 854 620 317 70 22 chr1 35335959 35336317 -161859115 - L1MC3 LINE L1 -497 7288 6914 5 854 367 296 31 57 chr1 35336459 35336688 -161858744 - L1MC LINE L1 -1706 4440 4218 5 854 2285 97 22 3 chr1 35336718 35337039 -161858393 - ORR1A2 LTR MaLR 0 327 1 5 854 363 214 22 6 chr1 35337039 35337219 -161858213 + CT-rich Low_complexity Low_complexity 1 183 0 5 854 389 307 142 68 chr1 35337323 35337708 -161857724 - L1MC LINE L1 -2157 3989 3542 5 854 677 261 42 33 chr1 35337708 35337922 -161857510 + B3 SINE B2 1 216 0 5 854 510 308 74 25 chr1 35337922 35338304 -161857128 - L1MC LINE L1 -2598 3548 3161 5 854 321 89 0 0 chr1 35338484 35338529 -161856903 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 854 1321 264 41 43 chr1 35338626 35338810 -161856622 - RMER15 LTR ERVL -91 484 295 5 854 1350 141 22 9 chr1 35338810 35339032 -161856400 - URR1B DNA MER1_type 0 225 1 5 854 1321 264 41 43 chr1 35339032 35339089 -161856343 - RMER15 LTR ERVL -281 294 241 5 854 252 0 0 0 chr1 35339089 35339117 -161856315 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 854 1321 264 41 43 chr1 35339117 35339338 -161856094 - RMER15 LTR ERVL -335 240 22 5 854 251 254 17 0 chr1 35339384 35339443 -161855989 - RMER15 LTR ERVL -515 60 1 5 854 198 0 0 0 chr1 35339650 35339672 -161855760 + (CAAAC)n Simple_repeat Simple_repeat 1 22 0 5 854 651 327 42 10 chr1 35340071 35340383 -161855049 + L1MD2 LINE L1 1814 2135 -4498 5 854 322 337 36 136 chr1 35340423 35340732 -161854700 + B4A SINE B4 1 278 -14 5 854 541 288 92 49 chr1 35341186 35341632 -161853800 + L1MD2 LINE L1 2637 3101 -3436 5 854 1195 254 80 12 chr1 35341643 35341982 -161853450 + MTEa LTR MaLR 16 377 -2 5 854 849 167 32 27 chr1 35342031 35342216 -161853216 + B2_Mm2 SINE B2 2 187 -8 5 854 730 188 8 8 chr1 35342227 35342356 -161853076 + B3 SINE B2 2 130 -86 5 854 479 311 100 63 chr1 35342383 35342708 -161852724 + L1M5 LINE L1 2715 3040 -3106 5 854 710 179 0 82 chr1 35342708 35342854 -161852578 + B1_Mur2 SINE Alu 1 134 -15 5 854 2841 33 36 0 chr1 35342854 35343187 -161852245 - ORR1A1 LTR MaLR -1 345 1 5 854 479 311 100 63 chr1 35343187 35343357 -161852075 + L1M5 LINE L1 3041 3212 -2934 5 854 585 0 0 0 chr1 35343357 35343422 -161852010 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 854 479 311 100 63 chr1 35343422 35343524 -161851908 + L1M5 LINE L1 3213 3334 -2812 5 854 384 378 0 0 chr1 35343631 35343811 -161851621 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 854 228 381 0 7 chr1 35343828 35343963 -161851469 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 854 2695 77 12 30 chr1 35343994 35344256 -161851176 + BGLII LTR ERVK 1 259 -162 5 854 4423 58 29 2 chr1 35344256 35344805 -161850627 + LTRIS2 LTR ERV1 1 564 0 5 854 2695 77 12 30 chr1 35344805 35344971 -161850461 + BGLII LTR ERVK 260 421 0 5 854 1308 294 123 61 chr1 35345020 35346670 -161848762 + L1MD2 LINE L1 4112 5870 -880 5 854 640 88 28 55 chr1 35346678 35346859 -161848573 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 5 854 271 78 39 0 chr1 35346873 35346924 -161848508 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 854 995 102 0 0 chr1 35346989 35347126 -161848306 - L1_Mur2 LINE L1 -1045 4832 4696 5 854 4076 145 29 20 chr1 35347124 35347216 -161848216 + L1_Mm LINE L1 4838 4916 -967 5 854 3926 30 9 11 chr1 35347216 35347682 -161847750 + L1Md_F3 LINE L1 6119 6583 -1 5 854 4076 145 29 20 chr1 35347682 35348291 -161847141 + L1_Mm LINE L1 4917 5545 -338 5 854 6232 77 35 0 chr1 35348291 35349118 -161846314 + L1_Mus4 LINE L1 5774 6629 -7 5 854 329 173 67 29 chr1 35349123 35349362 -161846070 + (TAGA)n Simple_repeat Simple_repeat 1 248 0 5 854 721 322 47 21 chr1 35349367 35349792 -161845640 + L1MD2 LINE L1 5883 6318 -432 5 854 275 192 0 0 chr1 35350204 35350256 -161845176 - MT2A LTR ERVL -479 54 3 5 854 4507 132 82 1 chr1 35350269 35350951 -161844481 - RMER19A LTR ERVK 0 737 1 5 854 291 233 27 0 chr1 35352467 35352540 -161842892 + ORR1D2 LTR MaLR 1 75 -295 5 854 348 319 55 77 chr1 35352599 35352782 -161842650 - Tigger5 DNA MER2_type -2227 179 1 5 854 472 339 41 10 chr1 35353131 35353325 -161842107 + ID_B1 SINE B4 3 202 -22 5 854 303 28 0 0 chr1 35353636 35353672 -161841760 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 854 234 0 0 0 chr1 35353672 35353697 -161841735 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 854 2555 77 6 0 chr1 35353883 35354206 -161841226 + ORR1A2 LTR MaLR 3 327 0 5 854 1243 287 43 25 chr1 35355069 35355552 -161839880 + RMER5 LTR ERV1 43 534 0 5 854 459 0 0 0 chr1 35355588 35355639 -161839793 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 854 1204 297 35 23 chr1 35355965 35356313 -161839119 + RMER15-int LTR ERVL 2094 2445 -2554 5 854 611 361 90 20 chr1 35356364 35356760 -161838672 + RMER15-int LTR ERVL 4245 4665 -334 5 854 252 0 0 0 chr1 35356760 35356788 -161838644 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 854 611 361 90 20 chr1 35356788 35356880 -161838552 + RMER15-int LTR ERVL 4666 4766 -233 5 854 207 266 0 0 chr1 35357047 35357111 -161838321 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 854 519 17 0 0 chr1 35357442 35357502 -161837930 + (GAA)n Simple_repeat Simple_repeat 2 61 0 5 854 23 0 0 0 chr1 35357661 35357684 -161837748 + AT_rich Low_complexity Low_complexity 1 23 0 5 854 10453 54 9 0 chr1 35357893 35359176 -161836256 + L1Md_F2 LINE L1 4293 5586 -297 5 854 8220 47 7 1 chr1 35359177 35360166 -161835266 + L1Md_F2 LINE L1 5588 6582 0 5 854 258 56 0 0 chr1 35360211 35360247 -161835185 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 854 21 57 0 0 chr1 35360300 35360335 -161835097 + AT_rich Low_complexity Low_complexity 1 35 0 5 854 419 260 45 45 chr1 35360818 35360975 -161834457 + RLTR14 LTR ERV1 224 380 -2 5 854 627 258 158 5 chr1 35360976 35361198 -161834234 + MTEb LTR MaLR 68 323 -56 5 854 412 321 21 35 chr1 35362044 35362186 -161833246 - B1F1 SINE Alu -9 140 1 5 854 22 35 0 0 chr1 35362339 35362368 -161833064 + AT_rich Low_complexity Low_complexity 1 29 0 5 854 446 262 122 0 chr1 35362368 35362532 -161832900 - MER2 DNA MER2_type -160 185 2 5 854 1033 320 7 4 chr1 35362955 35363234 -161832198 + B4 SINE B4 12 291 -1 5 854 285 128 0 0 chr1 35363334 35363381 -161832051 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 5 854 2020 86 6 87 chr1 35363859 35363925 -161831507 + ORR1A4 LTR MaLR 1 47 -282 5 854 3516 25 2 0 chr1 35363925 35364320 -161831112 - MTA_Mm LTR MaLR 0 396 1 5 854 2020 86 6 87 chr1 35364320 35364611 -161830821 + ORR1A4 LTR MaLR 48 329 0 5 854 752 276 94 39 chr1 35365555 35365864 -161829568 - RMER15 LTR ERVL 0 575 250 5 854 2562 120 15 24 chr1 35366669 35367080 -161828352 - Lx2 LINE L1 0 6997 6591 5 854 768 122 0 0 chr1 35367082 35367205 -161828227 + (TCCC)n Simple_repeat Simple_repeat 4 126 0 5 854 688 281 19 19 chr1 35367259 35367473 -161827959 + B4A SINE B4 2 215 -77 5 854 270 288 103 41 chr1 35367572 35367717 -161827715 + B4 SINE B4 125 278 -14 5 854 411 288 50 38 chr1 35368718 35368877 -161826555 - RLTR19-int LTR ERVK -1739 4398 4238 5 854 781 263 47 126 chr1 35369005 35369536 -161825896 - RLTR19-int LTR ERVK -1967 4170 3682 5 854 495 306 190 14 chr1 35369890 35370169 -161825263 - RLTR42-int LTR ERVK -3658 1864 1537 5 854 1524 43 16 5 chr1 35370199 35370386 -161825046 - B2_Mm2 SINE B2 -5 190 2 5 854 374 202 64 9 chr1 35370471 35370581 -161824851 - MYSERV6-int LTR ERVK -1832 7127 7012 5 854 1116 269 18 14 chr1 35370579 35370865 -161824567 - RLTR42-int LTR ERVK -4123 1399 1113 5 854 3640 126 9 14 chr1 35371245 35371815 -161823617 + RMER2 LTR ERV1 1 567 0 5 854 3140 26 2 112 chr1 35373159 35373597 -161821835 + RLTR10 LTR ERVK 1 390 0 5 854 11826 87 64 51 chr1 35373597 35375555 -161819877 + RLTR10-int LTR ERVK 1 1984 -3 5 854 3122 28 2 112 chr1 35375557 35375995 -161819437 + RLTR10 LTR ERVK 1 390 0 5 854 3832 127 106 6 chr1 35376109 35376389 -161819043 + RMER6A LTR ERVK 1 310 -446 5 854 590 39 0 13 chr1 35376389 35376467 -161818965 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 854 3832 127 106 6 chr1 35376467 35376873 -161818559 + RMER6A LTR ERVK 311 756 0 5 854 597 248 99 37 chr1 35377227 35377549 -161817883 + RLTR15 LTR ERVK 2 343 -16 6 854 857 240 58 0 chr1 35377829 35378037 -161817395 - MT2A LTR ERVL -14 519 300 6 854 684 158 22 0 chr1 35378121 35378260 -161817172 + ORR1C2 LTR MaLR 1 142 -232 6 854 1129 43 14 0 chr1 35378284 35378422 -161817010 - B1_Mus1 SINE Alu -8 140 1 6 854 289 125 0 111 chr1 35378422 35378477 -161816955 + ORR1C2 LTR MaLR 137 185 -199 6 854 447 199 23 15 chr1 35378477 35378610 -161816822 + CT-rich Low_complexity Low_complexity 3 136 0 6 854 932 191 19 10 chr1 35378640 35378846 -161816586 + ORR1C2 LTR MaLR 177 384 0 6 854 737 240 6 16 chr1 35378901 35379083 -161816349 - ORR1E LTR MaLR -171 188 9 6 854 552 323 137 19 chr1 35380551 35380807 -161814625 + B4A SINE B4 7 292 0 6 854 405 102 0 0 chr1 35380820 35380879 -161814553 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 854 3874 34 0 0 chr1 35380961 35381408 -161814024 + L1Md_F2 LINE L1 6132 6578 -4 6 854 212 160 100 0 chr1 35381559 35381609 -161813823 + B2_Mm2 SINE B2 3 57 -138 6 854 1827 157 14 140 chr1 35383217 35383315 -161812117 - ORR1C2 LTR MaLR 0 384 291 6 854 2319 125 19 35 chr1 35383315 35383687 -161811745 + ORR1B2 LTR MaLR 2 367 0 6 854 1827 157 14 140 chr1 35383687 35383773 -161811659 - ORR1C2 LTR MaLR -94 290 202 6 854 258 32 0 0 chr1 35383773 35383804 -161811628 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 854 1827 157 14 140 chr1 35383804 35383821 -161811611 - ORR1C2 LTR MaLR -183 201 189 6 854 874 50 8 8 chr1 35383821 35383942 -161811490 + (GAA)n Simple_repeat Simple_repeat 3 123 0 6 854 1827 157 14 140 chr1 35383942 35383965 -161811467 - ORR1C2 LTR MaLR -196 188 180 6 854 186 43 0 0 chr1 35383965 35383988 -161811444 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 854 1827 157 14 140 chr1 35383988 35384197 -161811235 - ORR1C2 LTR MaLR -205 179 3 6 854 360 209 0 32 chr1 35384303 35384397 -161811035 - L1MB7 LINE L1 -10 6174 6084 6 854 764 31 20 0 chr1 35384654 35384752 -161810680 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 6 854 234 154 0 37 chr1 35384763 35384817 -161810615 + (TATAA)n Simple_repeat Simple_repeat 2 53 0 6 854 1728 239 99 19 chr1 35385003 35385516 -161809916 + RMER15 LTR ERVL 22 575 0 6 854 283 203 28 42 chr1 35386007 35386079 -161809353 - RMER15 LTR ERVL -445 130 60 6 854 326 105 79 0 chr1 35386190 35386266 -161809166 + G-rich Low_complexity Low_complexity 1 82 0 6 854 468 328 60 38 chr1 35386592 35387029 -161808403 - L1M4 LINE L1 -450 5728 5277 6 854 2995 66 34 10 chr1 35387180 35387591 -161807841 + BGLII LTR ERVK 1 421 0 6 854 425 177 112 81 chr1 35387993 35388153 -161807279 - RLTR15 LTR ERVK -194 165 1 6 854 858 308 73 56 chr1 35388401 35388993 -161806439 - L1M4 LINE L1 -951 5195 4594 6 854 374 286 28 66 chr1 35389095 35389308 -161806124 + MER44A DNA MER2_type 31 235 -104 6 106 936 277 24 78 chr1 35389373 35389745 -161805687 + ORR1E LTR MaLR 1 352 -7 6 855 330 115 0 0 chr1 35389770 35389831 -161805601 + (TCTCTG)n Simple_repeat Simple_repeat 4 64 0 6 855 407 202 25 0 chr1 35390367 35390446 -161804986 - ID4_ SINE ID -2 81 1 6 855 240 280 71 16 chr1 35390639 35390766 -161804666 - L1M4 LINE L1 -2329 3817 3684 6 855 192 200 0 0 chr1 35390847 35390887 -161804545 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 855 251 246 14 0 chr1 35390927 35390996 -161804436 - L1MD LINE L1 -645 5714 5645 6 855 210 71 0 0 chr1 35391236 35391264 -161804168 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 855 341 22 0 21 chr1 35391975 35392022 -161803410 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 6 855 453 320 56 45 chr1 35392040 35392328 -161803104 + B4A SINE B4 2 292 0 6 855 25 0 0 0 chr1 35392384 35392409 -161803023 + AT_rich Low_complexity Low_complexity 1 25 0 6 855 317 294 110 0 chr1 35392471 35392580 -161802852 - L1MD LINE L1 -1578 4568 4448 6 855 22 70 0 0 chr1 35392852 35392895 -161802537 + AT_rich Low_complexity Low_complexity 1 43 0 6 855 262 240 93 37 chr1 35392905 35393013 -161802419 - L1M3 LINE L1 -1988 4152 4039 6 855 589 294 19 86 chr1 35393013 35393270 -161802162 - B4 SINE B4 -4 288 49 6 855 432 303 65 28 chr1 35393653 35393901 -161801531 - L1MD LINE L1 -2535 3611 3355 6 855 1122 62 28 0 chr1 35394173 35394317 -161801115 + B1_Mus1 SINE Alu 1 148 0 6 855 261 0 0 0 chr1 35394317 35394346 -161801086 + (A)n Simple_repeat Simple_repeat 1 29 0 6 855 913 253 60 98 chr1 35394409 35394878 -161800554 + RLTR12B LTR ERVK 47 497 -31 6 855 2090 171 196 6 chr1 35395857 35396329 -161799103 + RMER19B LTR ERVK 308 873 -29 6 855 1407 49 16 5 chr1 35396329 35396513 -161798919 + L1Md_A LINE L1 6396 6581 -1 6 855 2090 171 196 6 chr1 35396513 35396540 -161798892 + RMER19B LTR ERVK 874 901 -1 6 855 459 282 97 22 chr1 35396689 35396874 -161798558 - B4A SINE B4 -39 253 55 6 855 228 299 0 33 chr1 35398126 35398165 -161797267 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 6 855 363 121 0 0 chr1 35398165 35398223 -161797209 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 855 228 299 0 33 chr1 35398223 35398273 -161797159 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 6 855 325 339 17 34 chr1 35398304 35398423 -161797009 - B4A SINE B4 -98 194 78 6 855 2960 175 159 29 chr1 35398512 35399164 -161796268 + RMER19A LTR ERVK 1 737 0 6 855 3240 48 36 0 chr1 35399394 35399787 -161795645 + MTB_Mm LTR MaLR 1 407 0 6 855 1493 197 51 27 chr1 35400735 35401110 -161794322 - ORR1C2 LTR MaLR 0 384 1 6 855 768 248 61 63 chr1 35401208 35401587 -161793845 - RMER17C LTR ERVK -32 378 1 6 855 1500 243 59 35 chr1 35401600 35402107 -161793325 + RMER15 LTR ERVL 52 570 -5 6 855 2511 93 30 19 chr1 35403093 35403454 -161791978 + RLTR8 LTR ERVK 1 365 0 6 855 248 231 31 0 chr1 35403997 35404062 -161791370 + MLT1B LTR MaLR 113 179 -211 6 855 365 277 101 67 chr1 35404063 35404241 -161791191 + B4A SINE B4 2 185 -107 6 855 207 0 0 0 chr1 35404399 35404422 -161791010 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 855 231 336 120 8 chr1 35404526 35404643 -161790789 + MLT1B LTR MaLR 255 384 -6 6 855 270 123 36 36 chr1 35405087 35405171 -161790261 + (TTTG)n Simple_repeat Simple_repeat 2 85 0 6 855 308 298 46 48 chr1 35405247 35405439 -161789993 + B4A SINE B4 3 202 -90 6 855 24 0 0 0 chr1 35405871 35405895 -161789537 + AT_rich Low_complexity Low_complexity 1 24 0 6 855 35 63 0 0 chr1 35405975 35406038 -161789394 + AT_rich Low_complexity Low_complexity 1 63 0 6 855 345 237 41 0 chr1 35406634 35406731 -161788701 - PB1D9 SINE Alu -1 119 19 6 855 1766 174 113 13 chr1 35406842 35407221 -161788211 - MTD LTR MaLR 0 419 3 6 855 482 228 0 10 chr1 35408069 35408171 -161787261 - B3 SINE B2 -102 114 14 6 855 371 280 45 27 chr1 35408449 35408559 -161786873 + Lx8 LINE L1 7216 7327 -146 6 855 315 65 0 0 chr1 35408561 35408607 -161786825 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 855 387 0 0 0 chr1 35409409 35409452 -161785980 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 855 445 276 258 18 chr1 35409478 35409699 -161785733 - B4A SINE B4 -18 274 1 6 855 337 268 93 14 chr1 35409701 35409841 -161785591 - L1MD3 LINE L1 -217 7778 7628 6 855 1475 229 155 89 chr1 35409848 35410691 -161784741 - RMER13B LTR ERVK -9 899 1 6 855 247 267 135 29 chr1 35410734 35410838 -161784594 - L1MD3 LINE L1 -461 7534 7420 6 855 252 256 50 25 chr1 35410990 35411070 -161784362 - RMER5 LTR ERV1 -99 435 354 6 855 746 144 19 9 chr1 35411120 35411347 -161784085 + (CA)n Simple_repeat Simple_repeat 1 229 0 6 855 303 252 86 19 chr1 35411375 35411480 -161783952 - RMER5 LTR ERV1 -294 240 129 6 855 504 288 55 0 chr1 35411747 35411910 -161783522 - L1MD3 LINE L1 -718 7277 7106 6 855 198 357 0 35 chr1 35412059 35412146 -161783286 - L2a LINE L2 0 3426 3343 6 855 382 291 0 0 chr1 35412362 35412448 -161782984 + RSINE1 SINE B4 4 89 -76 6 855 369 0 0 0 chr1 35412475 35412516 -161782916 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 855 545 344 18 28 chr1 35412607 35412825 -161782607 + B4A SINE B4 77 292 0 6 855 351 0 0 0 chr1 35412840 35412879 -161782553 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 855 2709 139 2 52 chr1 35413049 35413526 -161781906 - RLTR11B LTR ERVK 0 453 1 6 855 540 298 121 34 chr1 35413946 35414210 -161781222 - RMER15 LTR ERVL -16 559 273 6 855 271 246 46 69 chr1 35414236 35414367 -161781065 - RMER15 LTR ERVL -445 130 3 6 855 4161 55 2 0 chr1 35414766 35415438 -161779994 - L1_Mus1 LINE L1 0 6567 6060 6 855 864 247 70 50 chr1 35416650 35416952 -161778480 - MT2B LTR ERVL -48 553 246 6 855 226 233 0 91 chr1 35416940 35417006 -161778426 + RMER15 LTR ERVL 99 158 -417 6 855 1634 66 4 4 chr1 35417025 35417253 -161778179 + MTB LTR MaLR 172 399 -1 6 855 3004 98 54 22 chr1 35417258 35417706 -161777726 - Lx3B LINE L1 -68 6905 6444 6 855 496 298 137 51 chr1 35417874 35418075 -161777357 + B4 SINE B4 2 216 -76 6 855 375 23 0 0 chr1 35418075 35418119 -161777313 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 6 855 496 298 137 51 chr1 35418119 35418172 -161777260 + B4 SINE B4 217 277 -15 6 855 371 262 0 6 chr1 35418183 35418356 -161777076 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 855 398 303 111 12 chr1 35418723 35418967 -161776465 - L1MDa LINE L1 -1805 4732 4465 6 855 277 302 85 0 chr1 35419484 35419613 -161775819 + RMER15 LTR ERVL 418 557 -18 6 855 1696 242 94 27 chr1 35419993 35420469 -161774963 - RLTR18B LTR ERVK -4 508 1 6 855 295 308 119 29 chr1 35420585 35420829 -161774603 - L1MDa LINE L1 -2664 3873 3608 6 855 2020 251 126 16 chr1 35420880 35421500 -161773932 - Lx8 LINE L1 0 7473 6786 6 855 2622 73 3 9 chr1 35421502 35421833 -161773599 + ORR1A4 LTR MaLR 1 329 0 6 855 2801 158 64 9 chr1 35421834 35422301 -161773131 - MERVL-int LTR ERVL -1758 3727 3235 6 855 2547 112 50 0 chr1 35422301 35422704 -161772728 - MT2B LTR ERVL -178 423 1 6 855 437 152 3 348 chr1 35422510 35422803 -161772629 - ORR1A3-int LTR MaLR -1205 758 567 6 855 386 169 101 0 chr1 35422803 35422892 -161772540 - MERVL_2A-int LTR ERVL -133 5628 5531 6 855 4766 142 23 4 chr1 35422983 35423711 -161771721 - MERVL_2A-int LTR ERVL -352 5409 4668 6 855 378 230 180 64 chr1 35423908 35424080 -161771352 + MER76 LTR ERVL 28 219 -472 6 855 892 258 166 26 chr1 35424262 35424691 -161770741 + RMER5 LTR ERV1 43 531 -3 6 855 415 361 89 47 chr1 35424770 35425151 -161770281 + MER76-int LTR ERVL 2 398 -5791 6 855 337 317 3 9 chr1 35425413 35425751 -161769681 + (GGGTG)n Simple_repeat Simple_repeat 1 335 0 6 855 246 270 41 57 chr1 35425800 35425922 -161769510 + RMER15 LTR ERVL 299 418 -157 6 855 668 279 132 32 chr1 35426408 35426945 -161768487 - L1MDa LINE L1 -3128 3409 2819 6 855 317 322 76 11 chr1 35427017 35427202 -161768230 - L1MDa LINE L1 -4950 1683 1487 6 855 315 0 0 0 chr1 35427263 35427298 -161768134 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 855 1059 229 58 57 chr1 35427327 35427697 -161767735 + MT2B LTR ERVL 76 601 0 7 855 696 159 140 43 chr1 35427697 35427819 -161767613 - ORR1C1 LTR MaLR -31 353 227 7 855 2922 132 0 88 chr1 35427819 35428308 -161767124 + RLTR41 LTR ERV1 1 446 0 7 855 696 159 140 43 chr1 35428308 35428348 -161767084 - ORR1C1 LTR MaLR -158 226 175 7 855 387 0 0 0 chr1 35428361 35428404 -161767028 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 855 787 229 29 0 chr1 35428404 35428579 -161766853 - ORR1C1 LTR MaLR -198 180 1 7 855 565 298 94 56 chr1 35428665 35428932 -161766500 + B4 SINE B4 6 282 -10 7 855 345 302 38 0 chr1 35429124 35429230 -161766202 - PB1D10 SINE Alu -7 110 1 7 855 737 118 0 80 chr1 35430282 35430420 -161765012 + B2_Mm2 SINE B2 3 129 -66 7 855 2016 89 0 17 chr1 35430457 35430753 -161764679 - L1_Mus4 LINE L1 0 6636 6346 7 855 219 88 0 0 chr1 35432763 35432797 -161762635 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 855 380 323 23 23 chr1 35432801 35432934 -161762498 - B4 SINE B4 -10 282 150 7 855 385 305 68 8 chr1 35432970 35433102 -161762330 - RLTR42-int LTR ERVK -3744 1778 1639 7 855 1273 176 134 24 chr1 35433218 35433568 -161761864 - Lx7 LINE L1 -7 7689 7270 7 855 418 179 16 24 chr1 35433739 35433865 -161761567 - Lx4B LINE L1 -5 7053 6929 7 855 511 284 120 44 chr1 35435379 35435788 -161759644 - L1MD LINE L1 -813 5333 4894 7 855 494 266 50 97 chr1 35435878 35436178 -161759254 - RMER10A LTR ERVL -36 406 121 7 855 322 248 35 35 chr1 35436456 35436569 -161758863 - RMER5 LTR ERV1 -8 526 414 7 855 622 202 253 0 chr1 35436569 35436727 -161758705 + B3 SINE B2 2 199 -17 7 855 255 410 0 0 chr1 35436729 35436863 -161758569 + (TG)n Simple_repeat Simple_repeat 1 134 0 7 855 642 188 222 5 chr1 35436883 35437086 -161758346 - RMER4B LTR ERVK -338 247 1 7 855 279 233 17 0 chr1 35437331 35437391 -161758041 + ORR1B1 LTR MaLR 1 61 -318 7 855 1590 132 89 77 chr1 35438329 35438665 -161756767 + ORR1B1 LTR MaLR 47 386 -8 7 855 201 246 22 22 chr1 35438689 35438826 -161756606 + CT-rich Low_complexity Low_complexity 3 139 0 7 855 3703 50 0 0 chr1 35439663 35440104 -161755328 + L1Md_F3 LINE L1 5146 5586 -297 7 855 8329 36 4 1 chr1 35440104 35441085 -161754347 + L1Md_F3 LINE L1 5587 6570 -14 7 855 2393 158 40 0 chr1 35441372 35441776 -161753656 - MTC LTR MaLR 0 421 2 7 855 329 328 16 41 chr1 35442229 35442350 -161753082 + MLT2F LTR ERVL 40 157 -471 7 855 377 363 45 29 chr1 35442441 35442816 -161752616 + MLT2F LTR ERVL 281 661 -2 7 855 934 48 5 18 chr1 35442966 35443107 -161752325 + MTB_Mm LTR MaLR 1 142 -254 7 855 584 316 16 60 chr1 35443109 35443294 -161752138 - B3A SINE B2 -15 183 7 7 855 391 228 324 0 chr1 35443349 35443494 -161751938 + B4 SINE B4 26 217 -75 7 855 242 278 124 72 chr1 35443413 35443510 -161751922 + B1_Mur1 SINE Alu 48 149 0 7 855 390 311 28 49 chr1 35443523 35443665 -161751767 + B3A SINE B2 1 139 -59 7 855 1240 147 66 5 chr1 35445578 35445790 -161749642 - URR1B DNA MER1_type 0 225 1 7 855 648 194 0 0 chr1 35445796 35445930 -161749502 + (TA)n Simple_repeat Simple_repeat 2 135 0 7 855 1227 287 21 19 chr1 35446130 35446549 -161748883 + RMER5 LTR ERV1 106 525 -9 7 855 595 281 25 5 chr1 35446845 35447049 -161748383 + RMER5 LTR ERV1 252 459 -75 7 855 349 300 67 37 chr1 35448026 35448161 -161747271 - LTR16A1 LTR ERVL -259 197 59 7 855 335 236 7 0 chr1 35449220 35449360 -161746072 + (TG)n Simple_repeat Simple_repeat 2 142 0 7 855 676 297 102 11 chr1 35451155 35451421 -161744011 - B4A SINE B4 -1 291 2 7 855 1144 84 20 2 chr1 35451421 35451538 -161743894 + (GA)n Simple_repeat Simple_repeat 1 119 0 7 855 1382 17 0 27 chr1 35451538 35451723 -161743709 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 7 855 1144 23 40 6 chr1 35451723 35451861 -161743571 + (GA)n Simple_repeat Simple_repeat 1 140 0 7 855 355 244 43 86 chr1 35451965 35452104 -161743328 - B4A SINE B4 -159 133 1 7 855 535 321 101 32 chr1 35452374 35453661 -161741771 - L1M3c LINE L1 -2233 4143 2774 7 855 354 326 16 0 chr1 35453687 35453816 -161741616 - MLT1A0 LTR MaLR -24 341 211 7 855 252 0 0 0 chr1 35454182 35454210 -161741222 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 7 855 473 309 22 27 chr1 35454334 35454517 -161740915 - L1M3c LINE L1 -3843 2536 2355 7 855 351 316 101 57 chr1 35454793 35454859 -161740573 - L1M3c LINE L1 -4618 1766 1703 7 855 2084 170 5 58 chr1 35454859 35455258 -161740174 - ORR1C1 LTR MaLR 0 378 1 7 855 896 314 72 61 chr1 35455258 35456339 -161739093 - L1M3c LINE L1 -4682 1702 797 7 855 516 32 0 0 chr1 35457174 35457236 -161738196 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 855 780 299 18 70 chr1 35457241 35457525 -161737907 + B4 SINE B4 24 292 0 7 855 678 249 111 0 chr1 35458267 35458584 -161736848 - MTEb LTR MaLR 0 379 8 7 855 1487 250 52 10 chr1 35458716 35459104 -161736328 + MTD LTR MaLR 1 404 -15 7 855 361 202 162 0 chr1 35459541 35459640 -161735792 - MTEb LTR MaLR 0 379 265 7 855 414 0 0 0 chr1 35459674 35459720 -161735712 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 855 225 0 0 0 chr1 35459721 35459746 -161735686 + (CCA)n Simple_repeat Simple_repeat 2 26 0 7 855 426 231 166 14 chr1 35461796 35461913 -161733519 + B4 SINE B4 126 264 -28 7 855 216 0 0 0 chr1 35461913 35461937 -161733495 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 855 426 231 166 14 chr1 35461937 35461964 -161733468 + B4 SINE B4 265 291 -1 7 855 343 205 11 0 chr1 35461964 35462153 -161733279 + (CA)n Simple_repeat Simple_repeat 1 191 0 7 855 621 0 0 0 chr1 35462227 35462296 -161733136 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 855 222 37 0 0 chr1 35462936 35462963 -161732469 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 855 261 311 0 35 chr1 35463217 35463334 -161732098 + MLT1E3-int LTR MaLR 45 156 -1579 7 855 240 366 68 68 chr1 35463543 35463649 -161731783 + MLT1E3 LTR MaLR 231 335 -292 7 855 683 274 169 76 chr1 35463649 35463992 -161731440 - MTE2b LTR MaLR -4 375 1 7 855 314 328 129 45 chr1 35463992 35464206 -161731226 + MLT1E3 LTR MaLR 336 566 -58 7 855 345 283 11 0 chr1 35464277 35464369 -161731063 - RSINE1 SINE B4 -71 94 2 7 855 325 157 22 22 chr1 35464592 35464683 -161730749 + (CAGAGA)n Simple_repeat Simple_repeat 6 96 0 7 855 279 331 39 39 chr1 35464915 35465044 -161730388 - B4A SINE B4 -159 133 5 7 855 42170 4 0 0 chr1 35465061 35471380 -161724052 - L1Md_A LINE L1 0 6582 263 7 855 252 0 0 0 chr1 35471421 35471449 -161723983 + (TGG)n Simple_repeat Simple_repeat 1 28 0 7 855 216 0 0 0 chr1 35471449 35471473 -161723959 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 855 949 108 11 17 chr1 35472145 35472324 -161723108 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 855 722 276 45 25 chr1 35472344 35472419 -161723013 - B4 SINE B4 0 292 218 7 855 192 40 0 0 chr1 35472419 35472444 -161722988 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 855 722 276 45 25 chr1 35472444 35472569 -161722863 - B4 SINE B4 -75 217 88 7 855 282 106 0 0 chr1 35472573 35472620 -161722812 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 7 855 806 293 26 4 chr1 35473417 35473684 -161721748 + B4A SINE B4 12 284 -8 7 855 259 236 0 0 chr1 35473697 35473752 -161721680 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 855 655 306 43 4 chr1 35473835 35474114 -161721318 - L1MC2 LINE L1 -11 6333 6044 7 855 373 259 18 9 chr1 35474272 35474381 -161721051 + B3A SINE B2 1 110 -88 7 855 716 252 130 15 chr1 35474441 35474703 -161720729 - B4 SINE B4 0 292 1 7 855 725 313 52 30 chr1 35474725 35475166 -161720266 - L1MC2 LINE L1 -998 5148 4698 7 855 1998 187 49 15 chr1 35475172 35475579 -161719853 - MTC LTR MaLR 0 421 1 7 855 299 217 0 36 chr1 35475657 35475767 -161719665 + CT-rich Low_complexity Low_complexity 2 107 0 7 855 306 73 0 0 chr1 35475791 35475832 -161719600 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 855 541 250 119 76 chr1 35475840 35476117 -161719315 - B4 SINE B4 0 292 4 7 855 1683 184 260 6 chr1 35476153 35476619 -161718813 - L1_Mur3 LINE L1 -1435 4445 3862 7 855 392 232 28 21 chr1 35476621 35476766 -161718666 - L1_Mur3 LINE L1 -2732 3148 3003 7 855 210 191 0 0 chr1 35476790 35476832 -161718600 + CT-rich Low_complexity Low_complexity 4 45 0 7 855 468 51 0 0 chr1 35476856 35476915 -161718517 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 855 1885 126 16 9 chr1 35478308 35478628 -161716804 + ORR1A4 LTR MaLR 6 327 -2 7 855 1280 215 102 64 chr1 35478785 35479192 -161716240 + RLTR20B3 LTR ERVK 20 458 -119 7 855 1137 81 0 0 chr1 35479192 35479340 -161716092 + B1_Mus1 SINE Alu 1 148 0 7 855 1280 210 105 58 chr1 35479340 35479415 -161716017 + RLTR20B3 LTR ERVK 459 521 -56 7 855 4389 55 0 25 chr1 35479793 35480356 -161715076 + L1Md_F2 LINE L1 6034 6582 0 7 855 385 275 103 26 chr1 35480366 35480560 -161714872 - L1MB1 LINE L1 -9 6325 6117 7 855 1106 229 126 7 chr1 35480627 35480913 -161714519 + MTE2b LTR MaLR 60 379 0 7 855 469 265 97 6 chr1 35480931 35481135 -161714297 - L1MB1 LINE L1 -149 6040 5820 7 855 276 100 0 0 chr1 35481208 35481248 -161714184 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 855 357 266 192 8 chr1 35482171 35482296 -161713136 + RSINE1 SINE B4 4 151 -14 7 855 228 67 0 0 chr1 35482564 35482594 -161712838 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 855 1805 191 10 65 chr1 35483173 35483386 -161712046 - ORR1C1 LTR MaLR 0 378 163 7 855 210 37 0 0 chr1 35483386 35483413 -161712019 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 7 855 1805 191 10 65 chr1 35483413 35483532 -161711900 - ORR1C1 LTR MaLR -216 162 63 7 855 3296 33 13 8 chr1 35483532 35483926 -161711506 + MTA_Mm LTR MaLR 1 396 0 7 855 1805 191 10 65 chr1 35483926 35483989 -161711443 - ORR1C1 LTR MaLR -316 62 4 7 855 284 310 133 0 chr1 35484012 35484125 -161711307 - RSINE1 SINE B4 -23 142 15 7 855 1073 138 5 20 chr1 35484679 35484878 -161710554 + ORR1A4 LTR MaLR 1 196 -133 7 855 595 324 35 38 chr1 35485283 35485572 -161709860 + B4A SINE B4 1 288 -4 7 855 342 67 0 0 chr1 35486220 35486265 -161709167 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 855 371 302 190 41 chr1 35486579 35486800 -161708632 + B4 SINE B4 3 256 -36 7 855 540 89 0 0 chr1 35486816 35486895 -161708537 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 855 6515 113 122 2 chr1 35487293 35488288 -161707144 + RLTR13D3 LTR ERVK 1 1114 0 7 855 240 184 190 42 chr1 35488479 35488621 -161706811 + MER53 DNA hAT 16 178 -15 8 855 491 295 183 28 chr1 35488753 35489004 -161706428 - B4A SINE B4 -1 291 2 8 855 276 274 78 10 chr1 35489401 35489504 -161705928 + MER5A1 DNA MER1_type 28 137 -29 8 855 2282 126 6 3 chr1 35489999 35490325 -161705107 - ORR1A2 LTR MaLR 0 327 1 8 855 3205 60 5 2 chr1 35491228 35491627 -161703805 - MTB LTR MaLR 0 400 1 8 855 488 335 15 20 chr1 35491657 35491861 -161703571 + MER21B LTR ERV1 1 203 -660 8 855 234 292 47 9 chr1 35491910 35492017 -161703415 - RMER15 LTR ERVL -43 532 422 8 855 446 278 100 31 chr1 35492314 35492474 -161702958 - B4A SINE B4 -80 212 42 8 855 375 290 106 89 chr1 35492493 35492796 -161702636 + MER21B LTR ERV1 458 765 -98 8 855 587 331 89 56 chr1 35492865 35493326 -161702106 - RMER5 LTR ERV1 -3 531 56 8 855 301 173 0 0 chr1 35494204 35494256 -161701176 - HAL1-3A_ME LINE L1 -831 2027 1976 8 855 441 268 5 63 chr1 35494277 35494468 -161700964 + (TATG)n Simple_repeat Simple_repeat 1 180 0 8 855 259 113 0 36 chr1 35494508 35494563 -161700869 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 855 1191 242 24 12 chr1 35495535 35495790 -161699642 + Lx8 LINE L1 7072 7329 -144 8 855 869 250 45 8 chr1 35497729 35497971 -161697461 - ORR1D2 LTR MaLR -1 369 119 8 855 685 238 49 49 chr1 35497974 35498018 -161697414 - RMER5 LTR ERV1 -297 237 199 8 855 204 40 0 0 chr1 35498018 35498043 -161697389 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 8 855 685 238 49 49 chr1 35498043 35498223 -161697209 - RMER5 LTR ERV1 -336 198 13 8 855 456 222 54 124 chr1 35498228 35498413 -161697019 - ORR1D2-int LTR MaLR -28 1342 1171 8 855 324 0 0 0 chr1 35498605 35498641 -161696791 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 855 1929 245 63 66 chr1 35498792 35499442 -161695990 - ORR1D2-int LTR MaLR -200 1170 523 8 855 270 292 22 0 chr1 35499463 35499552 -161695880 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 8 855 21 36 0 0 chr1 35500242 35500270 -161695162 + AT_rich Low_complexity Low_complexity 1 28 0 1 855 1215 61 0 0 chr1 35500387 35500534 -161694898 - B1_Mus2 SINE Alu 0 147 1 2 855 8645 135 50 39 chr1 35500574 35502059 -161693373 - Lx4A LINE L1 0 7058 5531 3 855 5473 122 21 13 chr1 35502056 35502911 -161692521 + Lx4A LINE L1 4678 5539 -338 3 855 21 0 0 0 chr1 35503154 35503175 -161692257 + AT_rich Low_complexity Low_complexity 1 21 0 4 855 2351 153 76 5 chr1 35503562 35503955 -161691477 + MTC LTR MaLR 1 421 0 5 855 211 186 0 0 chr1 35504172 35504215 -161691217 + B1_Mus1 SINE Alu 9 51 -97 6 855 1189 204 0 13 chr1 35504557 35504786 -161690646 - URR1A DNA MER1_type 0 226 1 7 855 646 290 61 39 chr1 35504878 35505337 -161690095 + Lx7 LINE L1 855 1323 -6405 8 855 912 159 7 0 chr1 35505345 35505490 -161689942 + B1_Mur4 SINE Alu 5 150 0 9 855 545 324 53 19 chr1 35505531 35505739 -161689693 + B3 SINE B2 1 215 -1 1 855 1426 196 71 11 chr1 35505746 35506127 -161689305 + Lx7 LINE L1 1294 1697 -4183 8 855 8348 218 37 66 chr1 35506119 35507304 -161688128 + Lx7 LINE L1 3575 4757 -1123 8 855 1180 68 0 0 chr1 35507304 35507451 -161687981 + B1_Mus2 SINE Alu 1 147 0 1 855 8348 226 60 50 chr1 35507451 35509260 -161686172 + Lx7 LINE L1 4758 6578 -1118 8 855 534 232 101 0 chr1 35509261 35509399 -161686033 + Lx7 LINE L1 6764 6915 -781 8 855 470 262 237 6 chr1 35509407 35509580 -161685852 + Lx8 LINE L1 7068 7280 -193 1 855 321 341 0 22 chr1 35510509 35510692 -161684740 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 855 239 267 0 13 chr1 35510633 35510786 -161684646 + CT-rich Low_complexity Low_complexity 1 150 0 1 855 1879 79 4 0 chr1 35511448 35511713 -161683719 - ORR1A2 LTR MaLR 0 327 62 1 855 1229 41 0 0 chr1 35513238 35513384 -161682048 + B1_Mm SINE Alu 1 146 -1 1 855 300 83 0 0 chr1 35513385 35513433 -161681999 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 855 501 17 0 0 chr1 35515307 35515365 -161680067 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 855 261 118 0 0 chr1 35515365 35515416 -161680016 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 855 350 18 35 18 chr1 35515658 35515715 -161679717 - B1_Mus2 SINE Alu 0 147 90 2 855 302 277 105 42 chr1 35515707 35515850 -161679582 + RMER15 LTR ERVL 420 571 -4 2 855 878 311 95 37 chr1 35516267 35517326 -161678106 + L1ME1 LINE L1 4994 6101 -78 2 855 283 263 41 57 chr1 35517322 35517479 -161677953 + L1_Rod LINE L1 4153 4292 -1555 2 855 602 79 0 11 chr1 35518063 35518153 -161677279 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 2 855 556 271 29 92 chr1 35518184 35518197 -161677235 - B4 SINE B4 0 292 283 2 855 432 0 0 0 chr1 35518197 35518245 -161677187 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 855 556 271 29 92 chr1 35518245 35518438 -161676994 - B4 SINE B4 -10 282 99 2 855 297 0 0 0 chr1 35518439 35518472 -161676960 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 855 404 250 0 9 chr1 35518496 35518609 -161676823 + L1M2 LINE L1 4580 4691 -1452 2 855 337 285 29 0 chr1 35519223 35519360 -161676072 + HAL1-2a_MD LINE L1 2365 2505 -519 2 855 525 216 0 0 chr1 35519367 35519501 -161675931 + (CAA)n Simple_repeat Simple_repeat 1 134 0 3 855 353 352 7 20 chr1 35519502 35519801 -161675631 + L1_Mur3 LINE L1 903 1197 -6531 3 855 463 271 13 61 chr1 35519801 35519958 -161675474 + ORR1D2 LTR MaLR 1 147 -231 3 855 384 239 16 33 chr1 35519960 35520081 -161675351 + L1_Mur3 LINE L1 5325 5443 -437 3 106 2179 261 135 35 chr1 35520081 35521078 -161674354 - ERVL-int LTR ERVL -88 5673 4520 3 856 634 229 31 56 chr1 35521557 35521719 -161673713 - B3A SINE B2 -6 192 35 3 856 198 250 0 0 chr1 35521779 35521835 -161673597 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 856 857 308 3 32 chr1 35521837 35522122 -161673310 - B4 SINE B4 0 292 16 3 856 495 48 0 0 chr1 35522262 35522324 -161673108 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 856 247 333 0 0 chr1 35522348 35522432 -161673000 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 856 667 207 6 11 chr1 35522881 35523062 -161672370 + CT-rich Low_complexity Low_complexity 1 180 0 3 856 679 123 144 38 chr1 35523235 35523395 -161672037 + RMER4B LTR ERVK 1 177 -408 3 856 369 238 19 96 chr1 35523510 35523716 -161671716 + RMER4B LTR ERVK 416 561 -24 4 856 506 335 11 61 chr1 35523762 35523943 -161671489 - B4A SINE B4 -120 172 1 4 856 447 288 236 0 chr1 35524617 35524846 -161670586 + B4A SINE B4 4 286 -6 4 856 549 0 0 0 chr1 35525620 35525681 -161669751 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 856 497 263 156 84 chr1 35526247 35526484 -161668948 - ORR1E LTR MaLR -6 353 100 4 856 810 252 37 5 chr1 35526487 35526702 -161668730 + MTD LTR MaLR 8 229 -190 4 856 1314 245 24 6 chr1 35526716 35527045 -161668387 + MTD LTR MaLR 84 418 -1 4 856 2106 187 45 5 chr1 35527638 35528158 -161667274 - Lx4B LINE L1 -2 6998 6443 4 856 1130 253 38 7 chr1 35528254 35528541 -161666891 + MTEb LTR MaLR 14 309 -70 4 856 1157 56 7 0 chr1 35528568 35528711 -161666721 + B1_Mus2 SINE Alu 1 144 -3 4 856 351 278 45 39 chr1 35528773 35529001 -161666431 + MLT1E2 LTR MaLR 325 519 -135 5 856 675 260 77 0 chr1 35529258 35529466 -161665966 + ID_B1 SINE B4 1 224 0 5 856 473 200 9 48 chr1 35529558 35529663 -161665769 - B1_Mur2 SINE Alu -7 142 42 5 856 207 266 0 59 chr1 35529663 35529731 -161665701 + C-rich Low_complexity Low_complexity 4 67 0 5 856 3245 98 45 54 chr1 35529960 35530477 -161664955 + RLTR1B LTR ERV1 1 512 0 5 856 1402 207 58 26 chr1 35531137 35531430 -161664002 + ORR1D2 LTR MaLR 1 310 -60 5 856 5446 119 111 61 chr1 35531430 35532404 -161663028 - RLTR13D2 LTR ERVK 0 1023 1 5 856 1402 207 58 26 chr1 35532404 35532457 -161662975 + ORR1D2 LTR MaLR 311 358 -12 5 856 27 0 0 0 chr1 35532599 35532626 -161662806 + AT_rich Low_complexity Low_complexity 1 27 0 5 856 430 288 24 0 chr1 35532851 35532976 -161662456 - B3 SINE B2 0 216 89 5 856 347 326 56 46 chr1 35533105 35533410 -161662022 + L1M4 LINE L1 436 743 -5799 5 856 496 301 39 136 chr1 35533427 35533685 -161661747 + B4A SINE B4 58 290 -2 6 856 339 25 0 0 chr1 35533733 35533773 -161661659 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 856 577 318 43 12 chr1 35533805 35534133 -161661299 + L1M4 LINE L1 4773 5110 -1534 5 856 8293 41 4 6 chr1 35534182 35535203 -161660229 - L1Md_F2 LINE L1 -12 6570 5552 6 856 330 314 105 0 chr1 35535204 35535328 -161660104 + B3A SINE B2 33 169 -29 6 856 381 282 79 48 chr1 35535498 35535725 -161659707 + L1M4 LINE L1 5349 5582 -1062 5 856 2164 240 108 53 chr1 35536252 35536984 -161658448 - Lx9 LINE L1 -8 7636 6865 6 856 375 261 202 47 chr1 35537451 35537480 -161657952 + ID SINE ID 1 28 -196 6 856 2072 131 45 36 chr1 35537480 35537836 -161657596 - RLTR15 LTR ERVK 0 359 1 6 856 375 261 202 47 chr1 35537836 35537999 -161657433 + ID_B1 SINE B4 29 223 -1 6 856 5618 128 11 3 chr1 35538136 35538988 -161656444 - Lx LINE L1 -14 6640 5783 6 856 3786 67 2 2 chr1 35538987 35539469 -161655963 - L1_Mus2 LINE L1 0 6566 6085 6 856 2368 148 0 0 chr1 35539475 35539839 -161655593 - L1_Mm LINE L1 -96 5787 5424 6 856 385 139 40 0 chr1 35540011 35540112 -161655320 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 7 856 503 153 10 0 chr1 35540124 35540222 -161655210 + GA-rich Low_complexity Low_complexity 3 101 0 7 856 378 298 97 43 chr1 35540268 35540475 -161654957 + B4A SINE B4 66 283 -9 7 856 240 35 0 0 chr1 35540508 35540537 -161654895 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 856 425 293 83 38 chr1 35540542 35540914 -161654518 + L1M5 LINE L1 3559 3947 -2199 7 856 1003 259 169 40 chr1 35540927 35541052 -161654380 - Lx9 LINE L1 -9 7635 7496 7 856 342 0 0 0 chr1 35541052 35541090 -161654342 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 856 1003 259 169 40 chr1 35541090 35541462 -161653970 - Lx9 LINE L1 -149 7495 7075 7 856 468 0 0 0 chr1 35541554 35541606 -161653826 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 856 31474 86 13 62 chr1 35541650 35546595 -161648837 + L1Md_F2 LINE L1 238 4883 -1000 7 856 8150 45 2 2 chr1 35546595 35547578 -161647854 + L1Md_F2 LINE L1 5587 6569 -13 7 856 194 0 39 0 chr1 35547583 35547609 -161647823 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 856 31474 63 11 71 chr1 35547609 35548311 -161647121 + L1Md_F2 LINE L1 4884 5586 -297 7 856 8277 44 3 3 chr1 35548311 35549307 -161646125 + L1Md_F2 LINE L1 5587 6582 0 7 856 360 0 0 0 chr1 35549318 35549358 -161646074 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 8 856 497 201 27 113 chr1 35549364 35549549 -161645883 - L1_Rod LINE L1 -2297 3550 3382 8 856 452 259 262 29 chr1 35549548 35549880 -161645552 - L1_Rod LINE L1 -3079 2768 2335 8 856 2889 217 75 52 chr1 35549969 35550494 -161644938 + L1_Rod LINE L1 1203 1758 -4089 8 856 1299 74 17 0 chr1 35550494 35550670 -161644762 + L1Md_T LINE L1 6402 6580 -2 8 856 2889 217 75 52 chr1 35550670 35551111 -161644321 + L1_Rod LINE L1 1759 2191 -3656 8 856 1818 160 25 3 chr1 35552083 35552403 -161643029 - ORR1B1 LTR MaLR -20 374 48 8 856 606 275 19 12 chr1 35552392 35552554 -161642878 + B4A SINE B4 122 284 -8 8 856 417 39 0 0 chr1 35552636 35552687 -161642745 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 856 268 268 0 0 chr1 35553978 35554049 -161641383 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 856 420 71 0 0 chr1 35554138 35554194 -161641238 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 856 637 267 84 42 chr1 35555072 35555334 -161640098 + MTEa LTR MaLR 107 379 0 9 856 303 200 18 54 chr1 35556039 35556150 -161639282 + (TTTA)n Simple_repeat Simple_repeat 2 108 0 9 856 65 56 0 0 chr1 35556156 35556263 -161639169 + AT_rich Low_complexity Low_complexity 1 107 0 9 856 2063 290 85 100 chr1 35556458 35556578 -161638854 - Lx4B LINE L1 -26 7434 7316 9 856 414 79 0 0 chr1 35556578 35556641 -161638791 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 856 6004 189 42 15 chr1 35556641 35558443 -161636989 - Lx4B LINE L1 -145 7315 5536 9 856 5610 120 9 5 chr1 35558442 35559314 -161636118 + L1_Mur2 LINE L1 3224 4099 -1778 9 856 565 228 6 6 chr1 35559842 35560010 -161635422 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 9 856 1031 219 0 4 chr1 35560036 35560314 -161635118 + (TGGA)n Simple_repeat Simple_repeat 1 276 0 9 856 431 309 45 32 chr1 35560465 35560619 -161634813 - RSINE1 SINE B4 -7 158 3 9 856 6545 71 21 6 chr1 35560782 35561631 -161633801 - L1_Mus1 LINE L1 -12 6555 5694 9 856 10585 83 12 1 chr1 35561627 35563044 -161632388 + L1_Mus1 LINE L1 4304 5736 -147 9 856 774 0 0 0 chr1 35563052 35563138 -161632294 + (TTC)n Simple_repeat Simple_repeat 2 87 0 9 856 1753 82 85 8 chr1 35563192 35563451 -161631981 - L1Md_F2 LINE L1 -1 6581 6303 1 856 422 188 10 0 chr1 35564156 35564257 -161631175 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 856 2796 129 81 34 chr1 35564285 35564789 -161630643 - RLTR11A LTR ERVK 0 528 1 1 856 306 0 0 0 chr1 35564796 35564830 -161630602 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 856 292 229 29 0 chr1 35564926 35564996 -161630436 - B4 SINE B4 -218 74 3 1 856 3534 30 0 128 chr1 35565798 35566298 -161629134 + RLTR10C LTR ERVK 1 436 0 1 856 891 248 87 31 chr1 35566300 35566554 -161628878 + B4A SINE B4 25 292 0 1 856 545 178 8 0 chr1 35566555 35566673 -161628759 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 856 611 253 157 16 chr1 35567654 35567839 -161627593 + RMER15 LTR ERVL 365 575 0 1 856 2232 150 48 34 chr1 35568203 35568618 -161626814 - MTC LTR MaLR 0 421 1 1 856 658 263 130 11 chr1 35569535 35569712 -161625720 - B3A SINE B2 0 198 1 1 856 356 273 23 20 chr1 35569787 35570095 -161625337 + (CATA)n Simple_repeat Simple_repeat 1 309 0 1 856 283 282 26 0 chr1 35570112 35570190 -161625242 + (CATA)n Simple_repeat Simple_repeat 1 80 0 1 856 422 253 74 58 chr1 35570498 35570687 -161624745 - MTD LTR MaLR -19 360 169 1 856 2131 201 72 14 chr1 35570697 35571189 -161624243 + RMER19C LTR ERVK 1 611 0 1 856 525 284 61 22 chr1 35571193 35571373 -161624059 - MTD LTR MaLR -232 187 1 1 856 354 308 7 34 chr1 35571810 35571958 -161623474 + L1M4 LINE L1 5562 5705 -479 1 856 867 290 92 9 chr1 35572265 35572592 -161622840 + ORR1E LTR MaLR 6 359 0 1 856 446 268 31 0 chr1 35573099 35573226 -161622206 + Lx5 LINE L1 6917 7047 -3 1 856 2121 76 6 59 chr1 35573581 35573918 -161621514 + ORR1A2 LTR MaLR 1 319 -8 1 856 264 275 21 21 chr1 35574124 35574217 -161621215 - L1MB7 LINE L1 -9 6175 6083 1 856 366 310 13 13 chr1 35574251 35574408 -161621024 - L1MB7 LINE L1 -172 6012 5856 1 856 1068 73 7 0 chr1 35574413 35574550 -161620882 + B1_Mus1 SINE Alu 5 142 -6 1 856 234 91 0 0 chr1 35574567 35574600 -161620832 + (A)n Simple_repeat Simple_repeat 1 33 0 1 856 251 286 70 2 chr1 35574602 35574727 -161620705 - L1M5 LINE L1 -450 5714 5584 1 856 4950 197 61 61 chr1 35574730 35576041 -161619391 - RMER12 LTR ERVK -2 1320 10 1 856 386 127 14 0 chr1 35576228 35576299 -161619133 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 856 228 111 0 0 chr1 35576299 35576335 -161619097 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 856 700 355 16 0 chr1 35576335 35576577 -161618855 - B4 SINE B4 -22 270 25 1 856 237 359 52 24 chr1 35576872 35576940 -161618492 - L1M3 LINE L1 -1613 4527 4462 1 856 2945 49 0 0 chr1 35576940 35577286 -161618146 - ORR1A0 LTR MaLR 0 346 1 1 856 237 359 52 24 chr1 35577286 35577428 -161618004 - L1M3 LINE L1 -1679 4461 4311 1 856 515 299 140 34 chr1 35577758 35578166 -161617266 - L1MB3 LINE L1 -115 6068 5618 1 856 1189 54 14 0 chr1 35578616 35578764 -161616668 + B1_Mur4 SINE Alu 1 150 0 1 856 446 236 28 9 chr1 35578912 35579019 -161616413 - B1_Mur1 SINE Alu -19 130 22 1 856 850 268 93 36 chr1 35579503 35579805 -161615627 + MTE2a LTR MaLR 61 379 0 1 856 632 279 93 44 chr1 35580428 35580698 -161614734 - B4 SINE B4 -2 290 8 1 856 749 272 5 43 chr1 35581050 35581238 -161614194 + B3A SINE B2 2 182 -16 1 856 377 77 0 30 chr1 35581241 35581308 -161614124 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 856 212 280 0 0 chr1 35581635 35581685 -161613747 - B4A SINE B4 -242 50 1 1 856 601 82 0 43 chr1 35582172 35582287 -161613145 + (TCCC)n Simple_repeat Simple_repeat 1 110 0 1 856 373 364 80 38 chr1 35582419 35582656 -161612776 - B4A SINE B4 -41 251 5 1 856 853 258 135 27 chr1 35583503 35583762 -161611670 + B4 SINE B4 4 290 -2 1 856 423 0 0 0 chr1 35583912 35583959 -161611473 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 856 433 274 0 58 chr1 35584107 35584227 -161611205 + PB1D7 SINE Alu 3 115 -5 1 856 429 245 51 85 chr1 35584716 35584952 -161610480 + RMER15 LTR ERVL 337 564 -11 1 856 1058 207 4 40 chr1 35585892 35586118 -161609314 + URR1B DNA MER1_type 1 218 -7 1 856 2211 82 42 47 chr1 35586637 35586996 -161608436 - Lx LINE L1 -1 6653 6297 1 856 554 295 106 31 chr1 35587410 35587637 -161607795 + B4 SINE B4 30 273 -19 1 856 513 262 141 5 chr1 35588364 35588548 -161606884 + MTEb LTR MaLR 1 209 -170 1 856 563 157 9 0 chr1 35588548 35588656 -161606776 + CT-rich Low_complexity Low_complexity 1 109 0 1 856 452 296 28 11 chr1 35588657 35588807 -161606625 + MTEb LTR MaLR 163 335 -44 1 856 230 208 21 0 chr1 35588840 35588888 -161606544 + MTEa LTR MaLR 6 54 -325 1 856 4947 6 0 0 chr1 35588957 35589497 -161605935 - L1Md_A LINE L1 -2 6580 6041 1 856 888 280 76 45 chr1 35589590 35590008 -161605424 + RMER13A LTR ERVK 14 494 -414 1 856 604 201 99 17 chr1 35590375 35590547 -161604885 + MTEa LTR MaLR 194 379 0 1 856 741 266 195 9 chr1 35591714 35592032 -161603400 + MTD LTR MaLR 20 386 -14 1 856 1701 244 86 25 chr1 35592237 35592648 -161602784 + RMER15 LTR ERVL 33 442 -133 1 856 360 0 0 0 chr1 35592648 35592688 -161602744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 856 1701 244 86 25 chr1 35592688 35592788 -161602644 + RMER15 LTR ERVL 443 575 0 1 856 484 312 28 7 chr1 35592788 35592925 -161602507 - B4A SINE B4 -58 234 95 1 856 676 252 205 16 chr1 35593648 35593940 -161601492 - MTE2b LTR MaLR -24 355 1 1 856 741 291 91 11 chr1 35594468 35594732 -161600700 - B4A SINE B4 -2 290 6 1 856 648 294 92 39 chr1 35595717 35596015 -161599417 + ORR1E LTR MaLR 3 338 -41 1 856 856 203 16 37 chr1 35596325 35596514 -161598918 - ORR1D-int LTR MaLR -331 1039 855 1 856 352 208 118 16 chr1 35596509 35596636 -161598796 - ORR1D-int LTR MaLR -847 523 384 1 856 258 333 51 8 chr1 35596645 35596763 -161598669 + ORR1D2 LTR MaLR 252 374 0 1 856 4261 249 38 70 chr1 35596763 35597396 -161598036 + ORR1D2-int LTR MaLR 1 637 -733 1 856 2028 90 84 62 chr1 35597396 35597716 -161597716 + ORR1A2 LTR MaLR 1 327 0 1 856 4261 249 38 70 chr1 35597716 35598497 -161596935 + ORR1D2-int LTR MaLR 638 1369 -1 1 856 1166 269 33 25 chr1 35598499 35598861 -161596571 + ORR1D2 LTR MaLR 3 367 -3 1 856 562 270 306 5 chr1 35599311 35599527 -161595905 - MTD LTR MaLR -12 407 127 1 856 216 67 0 0 chr1 35599592 35599622 -161595810 + (CATG)n Simple_repeat Simple_repeat 1 30 0 1 856 489 17 0 0 chr1 35599624 35599682 -161595750 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 856 659 304 48 64 chr1 35599685 35599980 -161595452 - B4A SINE B4 -1 291 2 1 856 477 271 82 8 chr1 35599995 35600129 -161595303 + ORR1E LTR MaLR 47 190 -169 1 856 362 247 131 51 chr1 35600248 35600423 -161595009 + MLT1A0 LTR MaLR 5 193 -172 1 856 440 254 31 41 chr1 35600471 35600618 -161594814 - B1_Mm SINE Alu -2 148 1 1 856 4383 108 30 12 chr1 35600986 35601645 -161593787 - Lx3C LINE L1 -2 6974 6304 1 856 381 177 12 25 chr1 35601645 35601726 -161593706 - MTD LTR MaLR -290 80 1 1 856 644 283 40 0 chr1 35601728 35601901 -161593531 + ID_B1 SINE B4 39 218 -6 1 856 2053 165 18 25 chr1 35601920 35602317 -161593115 + ORR1B1 LTR MaLR 1 394 0 1 856 201 135 54 0 chr1 35602323 35602360 -161593072 + A-rich Low_complexity Low_complexity 4 42 0 1 856 24 0 0 0 chr1 35602590 35602614 -161592818 + AT_rich Low_complexity Low_complexity 1 24 0 1 856 1615 239 39 22 chr1 35603328 35603735 -161591697 - MTD LTR MaLR -3 416 3 1 856 338 91 18 0 chr1 35603831 35603886 -161591546 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 1 856 235 340 31 0 chr1 35603923 35604020 -161591412 + HAL1 LINE L1 668 767 -1740 1 856 276 30 0 0 chr1 35604432 35604465 -161590967 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 1 856 556 325 75 22 chr1 35606664 35606932 -161588500 - B4A SINE B4 -6 286 5 1 856 382 246 130 8 chr1 35607632 35607763 -161587669 + B4A SINE B4 7 153 -139 1 856 301 322 21 11 chr1 35607810 35607904 -161587528 + B4A SINE B4 91 185 -107 1 856 514 313 88 22 chr1 35608236 35608556 -161586876 - L1MD1 LINE L1 -48 6194 5854 1 856 20186 139 33 9 chr1 35608704 35609964 -161585468 - Lx4B LINE L1 -1023 6035 4726 1 856 212 0 0 35 chr1 35609964 35609993 -161585439 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 856 20186 137 37 9 chr1 35609993 35610650 -161584782 - Lx4B LINE L1 -1152 4725 4051 1 856 3045 39 7 54 chr1 35610650 35611057 -161584375 - RLTR10 LTR ERVK -2 388 1 1 856 20186 137 28 8 chr1 35611057 35612785 -161582647 - Lx4B LINE L1 -1827 4050 2289 1 856 4382 192 53 17 chr1 35612781 35613670 -161581762 + Lx4B LINE L1 6116 7036 -22 1 856 276 30 0 0 chr1 35613670 35613703 -161581729 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 856 837 99 0 0 chr1 35613708 35613829 -161581603 + (GAA)n Simple_repeat Simple_repeat 1 121 0 1 856 477 0 0 0 chr1 35613829 35613881 -161581551 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 1 856 282 259 0 0 chr1 35613890 35613948 -161581484 - L1MD1 LINE L1 -541 5701 5644 1 856 1388 222 47 52 chr1 35613991 35614372 -161581060 + MTE2a LTR MaLR 1 379 0 1 856 1113 83 14 0 chr1 35614515 35614660 -161580772 - B1_Mus2 SINE Alu 0 147 1 1 856 337 320 139 20 chr1 35615496 35615697 -161579735 - B4A SINE B4 -66 226 2 1 856 821 292 29 20 chr1 35616030 35616275 -161579157 - MTEa LTR MaLR -118 261 15 1 856 196 319 28 0 chr1 35616287 35616359 -161579073 + L2c LINE L2 2996 3069 -318 1 856 327 294 233 0 chr1 35616764 35616910 -161578522 + B3A SINE B2 3 182 -16 1 856 280 225 25 12 chr1 35616910 35616991 -161578441 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 856 183 114 0 0 chr1 35617370 35617405 -161578027 + (A)n Simple_repeat Simple_repeat 1 35 0 1 856 643 312 77 45 chr1 35618078 35618413 -161577019 - MTE2a LTR MaLR -70 349 1 1 856 3306 34 26 0 chr1 35618705 35619091 -161576341 - MTA_Mm LTR MaLR 0 396 1 1 856 325 357 7 40 chr1 35619941 35620090 -161575342 + B4A SINE B4 1 144 -148 1 856 1568 85 5 0 chr1 35620440 35620652 -161574780 + L1_Mur2 LINE L1 2169 2381 -3496 1 856 4681 169 32 1 chr1 35620649 35621616 -161573816 + Lx5 LINE L1 5059 6090 -968 1 856 576 0 0 0 chr1 35621616 35621680 -161573752 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 856 2568 219 138 2 chr1 35621680 35621832 -161573600 + Lx5 LINE L1 6091 6291 -767 1 856 2777 125 0 31 chr1 35622064 35622484 -161572948 - MTB_Mm LTR MaLR 0 407 1 2 856 837 83 8 15 chr1 35622848 35622982 -161572450 + (GGGGA)n Simple_repeat Simple_repeat 4 136 0 2 856 1586 164 89 34 chr1 35623056 35623383 -161572049 - ORR1B1 LTR MaLR 0 394 50 2 856 331 132 0 0 chr1 35623521 35623574 -161571858 - ORR1B1 LTR MaLR -2 392 340 2 856 7494 74 10 11 chr1 35623574 35625092 -161570340 - L1_Mus2 LINE L1 0 6566 5047 2 856 1658 167 87 0 chr1 35625093 35625416 -161570016 - ORR1B1 LTR MaLR -43 351 1 2 856 345 62 0 0 chr1 35625516 35625564 -161569868 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 856 838 276 53 38 chr1 35625567 35625831 -161569601 - B4A SINE B4 -23 269 2 2 856 847 262 58 63 chr1 35627545 35627603 -161567829 + RMER5 LTR ERV1 79 143 -391 2 856 1285 146 8 95 chr1 35627603 35627845 -161567587 - URR1B DNA MER1_type 0 225 5 2 856 847 262 58 63 chr1 35627845 35628165 -161567267 + RMER5 LTR ERV1 144 455 -79 2 856 743 353 11 11 chr1 35628197 35628469 -161566963 - B4 SINE B4 -16 276 5 2 856 581 293 33 26 chr1 35628576 35628849 -161566583 - B4A SINE B4 -13 279 5 2 856 2242 133 86 0 chr1 35629002 35629364 -161566068 + ORR1B1 LTR MaLR 2 394 0 2 856 1894 211 10 14 chr1 35629397 35629810 -161565622 - MTD LTR MaLR -8 411 1 2 856 359 356 118 43 chr1 35629871 35630403 -161565029 - L1MDb LINE L1 -5296 1113 542 2 856 233 29 29 0 chr1 35630924 35630958 -161564474 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 856 477 0 0 0 chr1 35631450 35631503 -161563929 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 856 485 286 71 6 chr1 35631503 35631686 -161563746 + RMER15 LTR ERVL 379 573 -2 2 856 408 198 18 43 chr1 35632398 35632511 -161562921 + MTD LTR MaLR 1 104 -315 2 856 1841 256 138 70 chr1 35632511 35633309 -161562123 - RMER13A LTR ERVK 0 860 9 2 856 1998 116 26 0 chr1 35633319 35633629 -161561803 - ORR1A2 LTR MaLR -9 318 1 2 856 940 250 97 25 chr1 35633632 35633911 -161561521 + MTD LTR MaLR 106 404 -15 2 856 1024 302 40 19 chr1 35634147 35634518 -161560914 + MTEa LTR MaLR 1 379 0 2 856 192 152 0 0 chr1 35635316 35635349 -161560083 + CT-rich Low_complexity Low_complexity 4 36 0 2 856 440 325 45 7 chr1 35635414 35635569 -161559863 - RSINE1 SINE B4 -2 163 3 2 856 427 26 65 0 chr1 35635752 35635829 -161559603 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2 856 445 242 0 0 chr1 35635858 35635953 -161559479 + B4A SINE B4 188 282 -10 2 856 198 0 0 0 chr1 35635956 35635978 -161559454 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 856 468 0 0 0 chr1 35636795 35636847 -161558585 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 856 432 0 0 0 chr1 35637573 35637621 -161557811 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 856 1835 231 53 90 chr1 35637664 35638311 -161557121 + RMER20B LTR ERVK 1 623 -4 2 856 911 227 43 14 chr1 35638377 35638587 -161556845 - B3 SINE B2 0 216 1 2 856 256 231 144 27 chr1 35639122 35639233 -161556199 + MER5A DNA MER1_type 61 184 -5 2 856 486 288 48 39 chr1 35639739 35639945 -161555487 - MLT1B LTR MaLR -4 386 179 2 856 216 0 0 0 chr1 35639945 35639969 -161555463 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 856 982 296 3 33 chr1 35640144 35640377 -161555055 + B4 SINE B4 1 227 -65 2 856 2527 169 47 21 chr1 35640377 35640891 -161554541 - RLTR11A2 LTR ERVK 0 527 1 2 856 982 296 3 33 chr1 35640891 35640958 -161554474 + B4 SINE B4 228 292 0 2 856 495 0 0 0 chr1 35641887 35641942 -161553490 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 856 758 262 118 20 chr1 35641942 35642187 -161553245 - B4 SINE B4 -23 269 1 2 856 3149 143 15 42 chr1 35643691 35644282 -161551150 - RLTR20B3 LTR ERVK -2 575 1 2 856 458 275 278 5 chr1 35645031 35645254 -161550178 + B4 SINE B4 5 288 -4 2 856 423 0 0 0 chr1 35645265 35645312 -161550120 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 856 236 300 56 40 chr1 35645795 35645920 -161549512 - MTE2a LTR MaLR -22 357 231 2 856 847 227 50 5 chr1 35647019 35647218 -161548214 - ORR1B2 LTR MaLR 0 367 160 2 856 240 224 0 0 chr1 35647222 35647289 -161548143 + GA-rich Low_complexity Low_complexity 1 67 0 2 856 268 310 50 0 chr1 35647291 35647391 -161548041 - ORR1B2 LTR MaLR -198 180 76 2 856 582 239 35 0 chr1 35647521 35647663 -161547769 + ORR1B1 LTR MaLR 1 147 -247 2 856 267 241 47 35 chr1 35647890 35647976 -161547456 - MTEb LTR MaLR -3 376 290 2 856 2588 77 3 0 chr1 35648390 35648716 -161546716 - ORR1A2 LTR MaLR 0 327 1 2 856 2124 101 0 12 chr1 35649315 35649637 -161545795 + ORR1A3 LTR MaLR 1 318 -8 2 856 27 73 0 0 chr1 35650369 35650424 -161545008 + AT_rich Low_complexity Low_complexity 1 55 0 2 856 579 286 43 26 chr1 35650426 35650656 -161544776 + RLTR42-int LTR ERVK 1167 1400 -4122 2 856 405 0 0 0 chr1 35650882 35650927 -161544505 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 856 1216 246 54 11 chr1 35650980 35651330 -161544102 + ORR1D2 LTR MaLR 1 365 -5 2 856 1142 56 14 0 chr1 35651432 35651576 -161543856 + B1_Mus2 SINE Alu 2 147 0 2 857 2406 78 6 14 chr1 35652376 35652727 -161542705 - Lx3_Mus LINE L1 -692 6317 5970 2 857 5033 72 7 8 chr1 35652724 35653437 -161541995 + L1_Mur1 LINE L1 3067 3778 -2108 2 857 198 0 0 0 chr1 35654695 35654717 -161540715 + (A)n Simple_repeat Simple_repeat 1 22 0 2 857 631 279 61 6 chr1 35654725 35654905 -161540527 + ID_B1 SINE B4 1 190 -34 2 857 193 89 44 0 chr1 35655114 35655159 -161540273 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 857 3140 3 0 8 chr1 35656239 35656590 -161538842 + L1Md_T LINE L1 6235 6582 0 2 857 1300 211 116 18 chr1 35656870 35657207 -161538225 - ORR1D1 LTR MaLR 0 374 5 2 857 1633 214 65 6 chr1 35657309 35657662 -161537770 + ORR1D1 LTR MaLR 1 374 0 2 857 309 51 0 0 chr1 35657666 35657705 -161537727 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 857 495 0 0 0 chr1 35657705 35657759 -161537673 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 857 609 83 0 0 chr1 35658440 35658524 -161536908 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 857 636 59 0 0 chr1 35658524 35658608 -161536824 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 857 214 261 43 0 chr1 35658852 35658921 -161536511 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 857 245 288 0 0 chr1 35658994 35659053 -161536379 + B4A SINE B4 88 146 -146 2 857 1586 235 25 11 chr1 35659380 35659742 -161535690 - ORR1D2 LTR MaLR -3 367 1 2 857 523 314 108 47 chr1 35661034 35661375 -161534057 + MTE2b LTR MaLR 6 367 -12 2 857 219 349 18 54 chr1 35661406 35661444 -161533988 - ID_B1 SINE B4 -116 108 20 2 857 264 273 0 29 chr1 35661444 35661512 -161533920 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 2 857 1586 230 36 3 chr1 35662294 35662652 -161532780 - ORR1D2 LTR MaLR 0 370 1 2 857 248 379 16 0 chr1 35663374 35663498 -161531934 - MER34A LTR ERV1 -398 173 48 2 857 225 244 39 157 chr1 35663950 35664052 -161531380 + B4 SINE B4 7 96 -196 2 857 1352 177 65 31 chr1 35664052 35664344 -161531088 + Lx5 LINE L1 6746 7047 -3 2 857 844 230 0 6 chr1 35664360 35664526 -161530906 + B4 SINE B4 93 257 -35 2 857 560 242 188 47 chr1 35664833 35665067 -161530365 - Lx9 LINE L1 -356 7288 7022 2 857 273 57 0 0 chr1 35665100 35665135 -161530297 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 857 325 103 0 0 chr1 35665135 35665193 -161530239 - Lx4A LINE L1 -19 7039 6982 2 857 887 104 8 0 chr1 35665193 35665327 -161530105 - RLTR27 LTR ERVK 0 309 175 2 857 1850 36 40 0 chr1 35665311 35665562 -161529870 - RLTR10A LTR ERVK -150 261 1 2 857 1117 140 17 6 chr1 35665565 35665745 -161529687 - Lx4A LINE L1 -69 6989 6808 2 857 1628 133 40 0 chr1 35665727 35665975 -161529457 + Lx4A LINE L1 6519 6776 -282 2 857 1748 227 13 24 chr1 35665969 35666348 -161529084 - Lx9 LINE L1 -610 7034 6660 2 857 2332 160 15 0 chr1 35666348 35666749 -161528683 - MTC LTR MaLR 0 421 15 2 857 1741 204 112 53 chr1 35666766 35667274 -161528158 - Lx9 LINE L1 -983 6661 6124 2 857 861 289 109 16 chr1 35667295 35667735 -161527697 + L1M3 LINE L1 4847 5327 -813 2 857 425 298 28 84 chr1 35667748 35667862 -161527570 + RSINE1 SINE B4 31 141 -24 2 857 388 0 39 0 chr1 35667862 35667914 -161527518 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 857 425 298 28 84 chr1 35667914 35667942 -161527490 + RSINE1 SINE B4 142 165 0 2 857 726 164 3 19 chr1 35667943 35668275 -161527157 + (CA)n Simple_repeat Simple_repeat 1 326 0 2 857 258 251 16 176 chr1 35668298 35668486 -161526946 + L1M3 LINE L1 5324 5481 -816 2 857 626 313 4 43 chr1 35668585 35668854 -161526578 + L1M3 LINE L1 5507 5756 -535 2 857 183 146 0 0 chr1 35669085 35669126 -161526306 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 857 256 311 136 22 chr1 35669126 35669399 -161526033 + L1MC3 LINE L1 3288 3591 -2555 2 857 185 154 0 25 chr1 35669476 35669516 -161525916 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 2 857 492 279 124 66 chr1 35669539 35669796 -161525636 + B4A SINE B4 3 274 -18 2 857 258 250 0 0 chr1 35669837 35669909 -161525523 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 857 276 344 60 32 chr1 35669962 35670211 -161525221 + L1MC3 LINE L1 5136 5391 -755 2 857 710 225 52 26 chr1 35670223 35670415 -161525017 + B3A SINE B2 2 198 0 2 857 506 276 49 0 chr1 35670433 35670556 -161524876 - B1_Mur2 SINE Alu -19 130 2 2 857 280 260 37 37 chr1 35670663 35670771 -161524661 - Lx8 LINE L1 -7 7466 7359 2 857 295 225 0 27 chr1 35670809 35670882 -161524550 - Lx8 LINE L1 -326 7147 7077 2 857 437 84 14 0 chr1 35670989 35671060 -161524372 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 857 374 246 123 0 chr1 35671104 35671234 -161524198 + L1MC3 LINE L1 5473 5618 -2167 2 857 392 324 74 74 chr1 35671365 35671595 -161523837 - B4 SINE B4 -12 280 51 2 857 229 281 33 22 chr1 35672808 35672899 -161522533 + L1MC3 LINE L1 6496 6587 -1198 2 857 677 290 13 44 chr1 35672935 35673162 -161522270 + B4A SINE B4 5 224 -68 2 857 1885 253 60 30 chr1 35673170 35673609 -161521823 + Lx9 LINE L1 7052 7485 -159 2 857 351 0 0 0 chr1 35673609 35673648 -161521784 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 857 1885 253 60 30 chr1 35673648 35673771 -161521661 + Lx9 LINE L1 7486 7631 -13 2 857 22 0 0 0 chr1 35673771 35673793 -161521639 + AT_rich Low_complexity Low_complexity 1 22 0 2 857 222 37 0 0 chr1 35673824 35673851 -161521581 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2 857 3538 199 63 43 chr1 35673852 35674694 -161520738 - Lx2B LINE L1 -17 6983 6125 3 857 743 301 70 51 chr1 35674710 35675330 -161520102 + L1M4 LINE L1 4198 4846 -1294 3 857 465 19 0 0 chr1 35675349 35675403 -161520029 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 857 401 295 47 0 chr1 35675534 35675683 -161519749 - MER2 DNA MER2_type -28 317 162 3 857 432 309 54 6 chr1 35676550 35676716 -161518716 + MER44B DNA MER2_type 66 239 -311 3 857 421 262 33 0 chr1 35676957 35677079 -161518353 + MER44B DNA MER2_type 391 516 -34 3 857 798 220 29 11 chr1 35677113 35677288 -161518144 - B3A SINE B2 -16 182 5 3 857 1175 273 84 6 chr1 35677292 35677638 -161517794 + MTE2b LTR MaLR 3 375 -4 3 857 736 223 6 29 chr1 35678225 35678396 -161517036 + B4A SINE B4 122 288 -4 3 857 2393 124 37 35 chr1 35678495 35678897 -161516535 + MTB_Mm LTR MaLR 3 405 -2 3 857 925 245 98 11 chr1 35679170 35679434 -161515998 + B4A SINE B4 5 291 -1 3 857 426 204 0 0 chr1 35679435 35679533 -161515899 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 857 465 19 0 0 chr1 35679808 35679862 -161515570 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 857 1162 206 102 35 chr1 35681447 35681779 -161513653 - Lx5 LINE L1 -21 7029 6709 3 857 317 193 18 0 chr1 35683439 35683496 -161511936 + B3 SINE B2 120 177 -39 3 857 302 222 27 14 chr1 35684806 35684879 -161510553 - ID4_ SINE ID -4 79 6 3 857 353 307 92 27 chr1 35685105 35685289 -161510143 - L1MC3 LINE L1 -264 7521 7326 3 857 269 68 0 22 chr1 35685322 35685367 -161510065 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 3 857 422 270 129 29 chr1 35685531 35685741 -161509691 + Lx8 LINE L1 7242 7472 -1 3 857 4390 39 6 0 chr1 35686378 35686887 -161508545 + RLTR1B LTR ERV1 1 512 0 3 857 864 211 118 11 chr1 35686970 35687157 -161508275 - B3 SINE B2 -8 208 2 3 857 355 314 59 0 chr1 35687180 35687282 -161508150 - ID_B1 SINE B4 -33 191 84 3 857 323 346 43 43 chr1 35689123 35689310 -161506122 - L1MEf LINE L1 -4272 1928 1742 3 857 273 29 0 0 chr1 35689370 35689404 -161506028 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 857 387 0 0 0 chr1 35689404 35689446 -161505986 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 857 2284 164 3 0 chr1 35689454 35689837 -161505595 - ORR1B1 LTR MaLR -8 386 3 3 857 595 321 41 38 chr1 35689899 35690190 -161505242 - B4A SINE B4 0 292 1 3 857 322 322 161 12 chr1 35690196 35690532 -161504900 - L1MEf LINE L1 -4576 1624 1239 3 857 2623 160 64 12 chr1 35690830 35691329 -161504103 - RLTR11A LTR ERVK -3 525 1 3 857 217 208 21 0 chr1 35691369 35691417 -161504015 - B4A SINE B4 -241 51 3 3 857 401 333 91 71 chr1 35691515 35691591 -161503841 - L1MEf LINE L1 -5250 950 875 3 857 800 259 93 63 chr1 35691591 35691958 -161503474 - MTE2a LTR MaLR -1 378 1 3 857 401 333 91 71 chr1 35691958 35692418 -161503014 - L1MEf LINE L1 -5326 874 403 3 857 562 292 45 13 chr1 35692578 35692734 -161502698 + B4A SINE B4 126 286 -6 3 857 239 247 0 11 chr1 35692788 35692878 -161502554 + (CA)n Simple_repeat Simple_repeat 1 89 0 3 857 252 0 0 0 chr1 35693141 35693169 -161502263 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 857 439 299 85 6 chr1 35693175 35693340 -161502092 - B4A SINE B4 -19 273 96 3 857 555 250 91 0 chr1 35693541 35693673 -161501759 - RSINE1 SINE B4 -17 148 5 3 857 214 297 0 15 chr1 35693786 35693851 -161501581 + L2a LINE L2 3363 3426 0 3 857 420 266 170 13 chr1 35693865 35694094 -161501338 - L1M5 LINE L1 -441 5683 5419 3 857 486 254 24 0 chr1 35694127 35694253 -161501179 - RSINE1 SINE B4 -26 139 11 3 857 642 215 98 60 chr1 35694576 35694759 -161500673 + B3A SINE B2 9 198 0 3 857 222 282 13 53 chr1 35695302 35695377 -161500055 + B4 SINE B4 1 72 -220 3 857 274 323 87 101 chr1 35695410 35695548 -161499884 + B4 SINE B4 157 292 0 3 857 296 265 7 0 chr1 35695566 35695713 -161499719 + (CA)n Simple_repeat Simple_repeat 1 148 0 3 857 533 15 15 0 chr1 35695740 35695806 -161499626 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 857 435 226 0 0 chr1 35696448 35696581 -161498851 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 3 857 222 37 0 0 chr1 35696753 35696780 -161498652 + (GAAAA)n Simple_repeat Simple_repeat 5 31 0 3 857 1221 106 0 0 chr1 35696780 35696960 -161498472 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 857 263 213 40 13 chr1 35697672 35697748 -161497684 - MTEb LTR MaLR -6 373 296 3 857 2294 93 12 56 chr1 35697754 35698096 -161497336 + ORR1A2 LTR MaLR 1 327 0 3 857 737 296 89 85 chr1 35698387 35698631 -161496801 + MT2A LTR ERVL 4 242 -291 3 857 223 50 75 0 chr1 35698631 35698671 -161496761 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 3 857 737 296 89 85 chr1 35698671 35698905 -161496527 + MT2A LTR ERVL 243 488 -45 3 857 255 61 0 0 chr1 35698905 35698938 -161496494 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 857 737 296 89 85 chr1 35698938 35698975 -161496457 + MT2A LTR ERVL 489 521 -12 3 857 320 352 41 37 chr1 35701468 35701710 -161493722 + RLTR42-int LTR ERVK 587 829 -4693 3 857 559 321 40 24 chr1 35702125 35702374 -161493058 + RLTR42-int LTR ERVK 1147 1399 -4123 3 857 180 0 0 0 chr1 35702979 35702999 -161492433 + (A)n Simple_repeat Simple_repeat 1 20 0 3 857 2700 133 130 38 chr1 35703134 35703742 -161491690 + MTC-int LTR MaLR 480 1143 -115 3 857 3021 67 34 0 chr1 35703770 35704157 -161491275 + MTB LTR MaLR 1 400 0 3 857 207 152 0 0 chr1 35704873 35704919 -161490513 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 3 857 254 392 35 30 chr1 35704926 35705126 -161490306 + RMER15 LTR ERVL 352 552 -23 3 857 429 20 0 0 chr1 35706117 35706167 -161489265 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 857 580 208 0 0 chr1 35706340 35706446 -161488986 + RLTR42-int LTR ERVK 2867 2972 -2550 3 857 279 0 0 0 chr1 35706468 35706499 -161488933 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 857 869 199 38 0 chr1 35706556 35706742 -161488690 + RLTR42-int LTR ERVK 4041 4233 -1289 3 857 1827 216 72 93 chr1 35707089 35707670 -161487762 + RLTR42-int LTR ERVK 4257 4825 -697 3 857 352 163 35 11 chr1 35707725 35707812 -161487620 + RLTR42-int LTR ERVK 4792 4880 -642 3 857 409 242 0 11 chr1 35707930 35708022 -161487410 + RLTR42-int LTR ERVK 5316 5406 -116 3 857 645 267 115 16 chr1 35708706 35709026 -161486406 - ORR1E LTR MaLR 0 359 8 3 857 389 20 20 0 chr1 35709413 35709463 -161485969 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 857 2739 106 11 3 chr1 35710099 35710478 -161484954 + RLTR14 LTR ERV1 1 382 0 3 857 584 224 22 78 chr1 35710558 35710737 -161484695 + ID_B1 SINE B4 7 175 -49 3 857 245 265 28 101 chr1 35710662 35710771 -161484661 + PB1D10 SINE Alu 17 117 0 3 857 206 85 60 60 chr1 35710794 35710844 -161484588 + A-rich Low_complexity Low_complexity 1 50 0 3 857 189 74 0 0 chr1 35710844 35710871 -161484561 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 3 857 269 292 0 33 chr1 35711060 35711212 -161484220 + G-rich Low_complexity Low_complexity 3 149 0 3 857 223 279 81 0 chr1 35711750 35711836 -161483596 + MER5B DNA MER1_type 41 133 -45 3 857 1527 142 168 18 chr1 35712158 35712444 -161482988 - ORR1A4 LTR MaLR 0 329 1 3 857 627 39 0 0 chr1 35713077 35713155 -161482277 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 857 855 194 92 20 chr1 35713284 35713479 -161481953 - MTD LTR MaLR -8 411 203 3 857 660 163 0 0 chr1 35713479 35713774 -161481658 + (TCTCTG)n Simple_repeat Simple_repeat 1 295 0 3 857 876 264 0 0 chr1 35713777 35713978 -161481454 - MTD LTR MaLR -218 201 1 3 857 1215 200 169 33 chr1 35714020 35714456 -161480976 - MT2A LTR ERVL 0 533 69 3 857 394 283 49 55 chr1 35715284 35715524 -161479908 - L1M5 LINE L1 -1199 4947 4705 3 857 1279 244 9 49 chr1 35715622 35715946 -161479486 + RMER15-int LTR ERVL 4526 4836 -163 3 857 479 302 45 1 chr1 35715946 35716083 -161479349 - B4A SINE B4 -141 151 7 3 857 277 331 52 21 chr1 35716256 35716447 -161478985 - RMER15 LTR ERVL -13 562 366 3 857 1032 105 0 0 chr1 35716967 35717119 -161478313 + (GAAA)n Simple_repeat Simple_repeat 4 155 0 3 857 414 0 0 0 chr1 35717119 35717164 -161478268 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 857 886 208 16 5 chr1 35717296 35717480 -161477952 - B3 SINE B2 0 216 31 3 857 263 93 23 0 chr1 35717788 35717831 -161477601 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 3 857 896 292 75 30 chr1 35718478 35718697 -161476735 - L1PB4 LINE L1 -215 7429 7190 3 857 477 0 0 0 chr1 35718697 35718750 -161476682 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 3 857 896 292 75 30 chr1 35718750 35718932 -161476500 - L1PB4 LINE L1 -455 7189 7010 3 857 546 189 0 0 chr1 35718938 35719049 -161476383 + GA-rich Low_complexity Low_complexity 2 112 0 3 857 515 272 24 36 chr1 35719052 35719220 -161476212 - L1PB4 LINE L1 -649 6995 6830 3 857 737 179 0 13 chr1 35719226 35719379 -161476053 + CT-rich Low_complexity Low_complexity 2 152 0 3 857 1095 52 15 0 chr1 35719391 35719525 -161475907 - B1_Mus2 SINE Alu -9 138 3 3 857 244 324 18 18 chr1 35719533 35719646 -161475786 - L1PB4 LINE L1 -820 6824 6712 3 857 6320 255 62 40 chr1 35719634 35721920 -161473512 - L1PB4 LINE L1 -101 6055 3657 3 857 207 0 0 0 chr1 35721920 35721943 -161473489 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 857 2178 101 0 9 chr1 35721953 35722274 -161473158 - ORR1A3 LTR MaLR -8 318 1 3 857 2538 246 154 133 chr1 35722278 35723007 -161472425 - L1PB4 LINE L1 -2189 3658 2913 3 857 186 43 0 0 chr1 35723007 35723030 -161472402 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 857 2538 246 154 133 chr1 35723030 35723512 -161471920 - L1PB4 LINE L1 -2935 2912 2365 3 857 1079 87 12 0 chr1 35723512 35723673 -161471759 - B2_Mm1t SINE B2 -22 171 9 3 857 2538 246 154 133 chr1 35723673 35724564 -161470868 - L1PB4 LINE L1 -2935 2364 1350 3 857 833 227 78 30 chr1 35724608 35724840 -161470592 + MTC-int LTR MaLR 67 309 -949 3 857 602 183 0 9 chr1 35724833 35724949 -161470483 - ORR1D1 LTR MaLR -259 115 1 3 857 782 289 34 45 chr1 35725672 35725940 -161469492 + B4 SINE B4 5 269 -23 3 857 432 0 0 0 chr1 35725941 35725989 -161469443 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 857 665 242 92 37 chr1 35727108 35727486 -161467946 - L1MD LINE L1 -669 5493 5094 3 857 237 97 16 0 chr1 35727537 35727599 -161467833 - MT2B LTR ERVL -2 531 469 3 857 36 62 0 0 chr1 35727633 35727697 -161467735 + AT_rich Low_complexity Low_complexity 1 64 0 3 857 935 237 118 60 chr1 35727700 35728167 -161467265 - MT2B LTR ERVL -61 540 1 3 857 228 305 99 54 chr1 35728392 35728614 -161466818 + L1MDb LINE L1 2 233 -6309 3 857 1003 244 78 44 chr1 35728645 35728941 -161466491 - Lx9 LINE L1 -970 6674 6369 3 857 233 308 98 15 chr1 35729634 35729766 -161465666 + B4A SINE B4 147 289 -3 3 857 212 0 0 35 chr1 35729862 35729891 -161465541 + (TAA)n Simple_repeat Simple_repeat 2 29 0 3 857 251 324 37 9 chr1 35729954 35730063 -161465369 - MER57E1 LTR ERV1 -233 139 28 4 857 227 300 38 0 chr1 35731000 35731080 -161464352 + L1MDb LINE L1 384 466 -6181 3 857 774 293 82 45 chr1 35731587 35732124 -161463308 + L1MDb LINE L1 1173 1744 -4996 3 857 956 252 64 21 chr1 35732124 35732404 -161463028 + B4 SINE B4 1 292 0 4 857 495 311 93 109 chr1 35732404 35732824 -161462608 + L1MDb LINE L1 1745 2096 -4644 3 857 982 286 92 17 chr1 35732824 35733173 -161462259 - MTE2b LTR MaLR -4 375 1 4 857 495 311 93 109 chr1 35733173 35733248 -161462184 + L1MDb LINE L1 2097 2174 -4566 3 857 204 214 0 0 chr1 35733416 35733430 -161462002 + (CATA)n Simple_repeat Simple_repeat 2 15 0 4 857 426 88 0 0 chr1 35733430 35733498 -161461934 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 4 857 204 214 0 0 chr1 35733498 35733525 -161461907 + (CATA)n Simple_repeat Simple_repeat 4 30 0 4 857 656 171 6 0 chr1 35733525 35733689 -161461743 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 4 857 278 258 34 101 chr1 35733698 35733935 -161461497 + L1MDb LINE L1 2455 2675 -4065 3 857 711 257 120 35 chr1 35734232 35734490 -161460942 + B4 SINE B4 2 281 -11 4 857 280 333 0 0 chr1 35734579 35734693 -161460739 + L1MDb LINE L1 5727 5840 -804 3 857 234 224 0 49 chr1 35734699 35734760 -161460672 + L1MD1 LINE L1 5945 6002 -240 4 857 268 273 113 24 chr1 35734791 35734915 -161460517 - MTD LTR MaLR -282 137 3 4 857 1285 88 33 16 chr1 35734916 35735100 -161460332 + B2_Mm2 SINE B2 1 187 -8 4 857 844 300 31 0 chr1 35735894 35736121 -161459311 - MTE2b LTR MaLR -133 246 13 4 857 616 265 25 30 chr1 35737479 35737678 -161457754 + MLT2D LTR ERVL 6 203 -211 4 857 213 309 72 24 chr1 35737678 35737761 -161457671 + B1F1 SINE Alu 1 87 -62 4 857 1169 251 124 15 chr1 35737774 35738262 -161457170 + Lx8 LINE L1 6887 7471 -2 4 857 260 86 0 0 chr1 35738397 35738432 -161457000 + PB1D10 SINE Alu 75 109 -8 4 857 761 239 133 34 chr1 35738580 35738844 -161456588 + B4A SINE B4 2 291 -1 4 857 1309 247 61 22 chr1 35739244 35739604 -161455828 - MTEa LTR MaLR 0 379 6 4 857 376 317 89 41 chr1 35739803 35740073 -161455359 - Kanga1 DNA Tc2 -1312 433 151 4 857 416 19 0 19 chr1 35740820 35740874 -161454558 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 857 1017 280 27 27 chr1 35740876 35741210 -161454222 + MTEa LTR MaLR 41 374 -5 4 857 765 48 0 0 chr1 35741302 35741407 -161454025 + B1_Mus2 SINE Alu 43 147 0 4 857 204 122 0 0 chr1 35741417 35741458 -161453974 + (GGA)n Simple_repeat Simple_repeat 2 42 0 4 857 625 283 81 42 chr1 35741852 35742088 -161453344 + B4A SINE B4 7 251 -41 4 857 259 138 17 33 chr1 35742115 35742175 -161453257 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 4 857 429 20 0 0 chr1 35742196 35742246 -161453186 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 857 414 0 0 0 chr1 35742247 35742293 -161453139 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 857 240 213 0 0 chr1 35742985 35743046 -161452386 + GA-rich Low_complexity Low_complexity 4 64 0 4 857 795 305 62 21 chr1 35743050 35743624 -161451808 + L1MA4 LINE L1 5325 5929 -362 4 857 237 178 0 0 chr1 35743656 35743701 -161451731 + (TATG)n Simple_repeat Simple_repeat 3 47 0 4 857 261 0 0 0 chr1 35744847 35744876 -161450556 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 857 264 205 54 43 chr1 35744946 35745038 -161450394 + ORR1E LTR MaLR 167 259 -100 4 857 255 215 165 0 chr1 35745135 35745214 -161450218 + ORR1E LTR MaLR 252 343 -36 4 857 244 143 24 0 chr1 35745381 35745423 -161450009 + Lx8 LINE L1 6903 6945 -528 4 857 338 268 70 28 chr1 35745665 35745807 -161449625 + RSINE1 SINE B4 1 148 -17 4 857 501 47 0 0 chr1 35746050 35746114 -161449318 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 857 550 314 47 33 chr1 35746151 35746362 -161449070 - B4 SINE B4 -77 215 2 4 857 243 0 0 0 chr1 35746485 35746512 -161448920 + (A)n Simple_repeat Simple_repeat 1 27 0 4 857 953 272 67 92 chr1 35747647 35748036 -161447396 + MTE2b LTR MaLR 1 379 0 4 857 387 60 0 0 chr1 35748909 35748959 -161446473 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 857 618 267 333 53 chr1 35748996 35749224 -161446208 - B4 SINE B4 0 292 1 4 857 2375 134 39 13 chr1 35749340 35749724 -161445708 + ORR1B1 LTR MaLR 1 394 0 4 857 873 299 32 25 chr1 35749991 35750272 -161445160 + B4 SINE B4 3 285 -7 4 857 560 53 13 0 chr1 35750272 35750348 -161445084 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 857 2532 140 29 26 chr1 35750475 35750893 -161444539 + MTC LTR MaLR 1 419 -2 4 857 241 284 0 80 chr1 35750965 35751053 -161444379 + MT2B LTR ERVL 42 122 -411 4 857 924 252 125 3 chr1 35750976 35751271 -161444161 + MTEa LTR MaLR 45 375 -4 4 857 188 135 0 26 chr1 35751798 35751836 -161443596 + GA-rich Low_complexity Low_complexity 3 39 0 4 857 294 311 46 30 chr1 35751839 35752062 -161443370 + L1M7 LINE L1 1166 1368 -4875 4 857 894 220 18 18 chr1 35752496 35752669 -161442763 + MT2B LTR ERVL 384 558 -43 4 857 444 37 0 0 chr1 35752669 35752723 -161442709 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 857 894 220 18 18 chr1 35752723 35752767 -161442665 + MT2B LTR ERVL 559 601 0 4 857 370 312 25 43 chr1 35752811 35752972 -161442460 + HAL1b LINE L1 1047 1204 -805 4 857 308 278 97 60 chr1 35752994 35753128 -161442304 + B4 SINE B4 3 141 -151 4 857 750 95 0 0 chr1 35753338 35753464 -161441968 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 857 437 172 0 11 chr1 35753633 35753727 -161441705 + GA-rich Low_complexity Low_complexity 1 93 0 4 857 1446 10 26 19 chr1 35753728 35754038 -161441394 + (GGAAA)n Simple_repeat Simple_repeat 1 312 0 4 857 717 73 0 0 chr1 35754038 35754133 -161441299 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 4 857 557 296 88 57 chr1 35754245 35754736 -161440696 + HAL1b LINE L1 1259 1764 -245 4 857 357 75 0 0 chr1 35755282 35755335 -161440097 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 857 771 251 144 35 chr1 35755339 35755770 -161439662 - RMER5 LTR ERV1 -26 508 31 4 857 455 288 246 6 chr1 35755871 35756050 -161439382 + B4 SINE B4 2 223 -69 4 857 267 31 0 0 chr1 35756050 35756082 -161439350 + (A)n Simple_repeat Simple_repeat 1 32 0 4 857 228 290 0 14 chr1 35756105 35756175 -161439257 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 857 764 169 0 15 chr1 35756319 35756451 -161438981 + B3 SINE B2 1 130 -86 4 857 801 331 43 19 chr1 35756520 35756893 -161438539 + Lx8 LINE L1 6917 7298 -175 4 857 2462 92 6 0 chr1 35756989 35757314 -161438118 - ORR1A2 LTR MaLR 0 327 1 4 857 517 253 122 163 chr1 35757940 35758228 -161437204 + B4A SINE B4 1 276 -16 4 857 403 338 91 15 chr1 35758466 35758730 -161436702 + Tigger7 DNA MER2_type 3 286 -2205 4 857 2129 146 66 18 chr1 35759161 35759553 -161435879 + MTC LTR MaLR 3 413 -8 4 857 2015 75 3 64 chr1 35759619 35759931 -161435501 + ORR1A2 LTR MaLR 33 325 -2 4 857 1444 152 98 37 chr1 35760010 35760161 -161435271 + ORR1D1 LTR MaLR 1 154 -220 4 857 868 68 22 38 chr1 35760161 35760344 -161435088 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 857 1444 152 98 37 chr1 35760344 35760540 -161434892 + ORR1D1 LTR MaLR 155 369 -5 4 857 297 0 0 0 chr1 35760560 35760593 -161434839 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 857 1627 21 16 0 chr1 35760828 35761016 -161434416 + B2_Mm1a SINE B2 2 192 -1 4 857 405 0 0 0 chr1 35761098 35761143 -161434289 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 857 494 306 91 25 chr1 35761147 35761345 -161434087 - B4 SINE B4 -12 280 70 4 857 288 0 0 0 chr1 35761715 35761747 -161433685 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 857 332 180 33 0 chr1 35762152 35762213 -161433219 + ORR1E LTR MaLR 1 63 -296 4 857 239 54 54 0 chr1 35762390 35762427 -161433005 + ORR1E LTR MaLR 25 63 -296 4 857 434 238 83 38 chr1 35762477 35762728 -161432704 + ORR1E LTR MaLR 24 322 -57 4 857 297 0 0 0 chr1 35762807 35762840 -161432592 + (TTA)n Simple_repeat Simple_repeat 3 35 0 4 857 5267 127 91 8 chr1 35763237 35764119 -161431313 - RMER17B LTR ERVK -3 955 1 4 857 2750 111 16 0 chr1 35764323 35764709 -161430723 - ORR1B1 LTR MaLR -2 392 1 4 857 2146 152 29 3 chr1 35765243 35765619 -161429813 - ORR1B1 LTR MaLR -8 386 1 4 857 1016 144 104 188 chr1 35765619 35766003 -161429429 - ORR1B1-int LTR MaLR 0 1509 1158 4 857 279 93 0 0 chr1 35765995 35766038 -161429394 - ORR1B1-int LTR MaLR -1466 43 1 4 857 2007 172 56 0 chr1 35766038 35766411 -161429021 - ORR1B1 LTR MaLR 0 394 1 4 857 351 272 0 0 chr1 35766412 35766493 -161428939 - B3A SINE B2 -109 89 9 4 857 637 130 16 16 chr1 35766760 35766885 -161428547 + CT-rich Low_complexity Low_complexity 4 128 0 4 857 3043 182 20 24 chr1 35766892 35767439 -161427993 - Lx5 LINE L1 -12 7038 6494 4 857 804 148 0 8 chr1 35767439 35767554 -161427878 + Lx5 LINE L1 6346 6460 -590 4 857 636 281 9 65 chr1 35769360 35769577 -161425855 + B4A SINE B4 88 292 0 4 857 207 250 15 30 chr1 35770165 35770231 -161425201 + (CATA)n Simple_repeat Simple_repeat 2 66 0 4 857 289 145 32 0 chr1 35771757 35771819 -161423613 + CT-rich Low_complexity Low_complexity 1 64 0 4 857 911 303 16 0 chr1 35771934 35772178 -161423254 + B4 SINE B4 3 250 -42 4 857 539 278 96 32 chr1 35772203 35772422 -161423010 + B4 SINE B4 10 242 -50 4 857 967 235 9 0 chr1 35773042 35773255 -161422177 - B3 SINE B2 -1 215 1 4 857 485 258 45 84 chr1 35773344 35773522 -161421910 + RMER30 DNA MER1_type 9 179 -23 4 857 189 0 0 0 chr1 35774112 35774133 -161421299 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 857 421 282 6 79 chr1 35774198 35774375 -161421057 + RSINE1 SINE B4 2 165 0 4 857 497 144 46 0 chr1 35774400 35774491 -161420941 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 857 189 0 0 0 chr1 35774491 35774512 -161420920 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 857 497 144 46 0 chr1 35774512 35774573 -161420859 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 857 267 230 53 13 chr1 35775527 35775602 -161419830 + ID_B1 SINE B4 146 223 -1 4 857 1581 201 105 5 chr1 35775701 35776082 -161419350 - MTD LTR MaLR 0 419 1 4 857 265 277 16 48 chr1 35776152 35776397 -161419035 + (CATA)n Simple_repeat Simple_repeat 1 237 0 4 857 211 229 6 44 chr1 35776398 35776581 -161418851 + (TAAA)n Simple_repeat Simple_repeat 2 177 0 4 857 220 168 0 78 chr1 35776625 35776754 -161418678 + (CATA)n Simple_repeat Simple_repeat 2 120 0 4 857 2480 185 26 42 chr1 35777205 35777747 -161417685 - MT2A LTR ERVL 0 533 1 4 857 22 0 0 0 chr1 35778078 35778100 -161417332 + AT_rich Low_complexity Low_complexity 1 22 0 5 857 1905 117 57 102 chr1 35778115 35778486 -161416946 - ORR1B1 LTR MaLR 0 394 41 5 857 2140 220 46 28 chr1 35779380 35779881 -161415551 + RMER5 LTR ERV1 13 522 -12 5 857 1176 162 36 106 chr1 35779880 35780354 -161415078 + RMER17C LTR ERVK 84 439 -519 5 857 206 182 0 83 chr1 35781060 35781108 -161414324 + C-rich Low_complexity Low_complexity 2 45 0 5 107 517 260 102 63 chr1 35782478 35782683 -161412749 - MER44A DNA MER2_type -25 314 102 5 858 551 251 189 89 chr1 35783167 35783469 -161411963 - RMER4B LTR ERVK -1 584 253 5 858 513 174 0 0 chr1 35783469 35783601 -161411831 + (CAAG)n Simple_repeat Simple_repeat 4 135 0 5 858 996 168 106 39 chr1 35783620 35783881 -161411551 - RMER4B LTR ERVK -292 293 1 5 858 395 119 0 15 chr1 35783893 35783961 -161411471 + (TCC)n Simple_repeat Simple_repeat 3 69 0 5 858 324 0 0 0 chr1 35785573 35785609 -161409823 + (TTA)n Simple_repeat Simple_repeat 3 38 0 5 858 903 149 191 0 chr1 35785719 35785907 -161409525 + URR1B DNA MER1_type 2 225 0 5 858 497 254 254 0 chr1 35786453 35786626 -161408806 - ID_B1 SINE B4 -6 218 2 5 858 258 352 62 39 chr1 35786653 35786783 -161408649 + MLT1A1 LTR MaLR 275 407 -1 5 858 234 374 85 24 chr1 35787394 35787605 -161407827 + L2a LINE L2 3202 3425 -1 5 858 470 285 62 23 chr1 35787834 35788010 -161407422 - RLTR41 LTR ERV1 0 446 264 5 858 249 158 0 0 chr1 35788711 35788749 -161406683 - ORR1B2 LTR MaLR -14 353 316 5 858 1153 102 84 6 chr1 35788749 35788927 -161406505 - B2_Mm2 SINE B2 -3 192 1 5 858 4234 65 20 0 chr1 35789139 35789681 -161405751 - L1Md_F3 LINE L1 0 6584 6032 5 858 7982 52 6 0 chr1 35789681 35790782 -161404650 + L1Md_F3 LINE L1 4889 5998 -586 5 858 693 283 43 14 chr1 35790834 35791042 -161404390 - B3 SINE B2 -2 214 1 5 858 440 249 104 29 chr1 35791261 35791497 -161403935 + RMER15 LTR ERVL 295 575 0 5 858 1628 235 35 35 chr1 35791539 35791849 -161403583 + MTD LTR MaLR 1 308 -111 5 858 3021 80 17 0 chr1 35791849 35792263 -161403169 - BGLII LTR ERVK 0 421 1 5 858 1628 235 35 35 chr1 35792263 35792357 -161403075 + MTD LTR MaLR 309 405 -14 5 858 3699 253 87 51 chr1 35792370 35793535 -161401897 + MTC-int LTR MaLR 51 1257 -1 5 858 623 253 58 64 chr1 35794272 35794406 -161401026 + RMER15 LTR ERVL 255 397 -178 5 858 2646 120 31 0 chr1 35794406 35794788 -161400644 - ORR1B1 LTR MaLR 0 394 1 5 858 623 253 58 64 chr1 35794788 35794826 -161400606 + RMER15 LTR ERVL 398 426 -149 5 858 6654 230 41 65 chr1 35795049 35797205 -161398227 + Lx7 LINE L1 1227 3331 -2549 5 858 1192 258 20 40 chr1 35797338 35797741 -161397691 + Lx7 LINE L1 3309 3703 -2177 5 858 544 222 31 5 chr1 35797723 35797872 -161397560 + Lx7 LINE L1 5462 5623 -677 5 858 696 230 53 43 chr1 35797874 35798082 -161397350 + ORR1D2 LTR MaLR 3 212 -158 5 858 770 289 20 53 chr1 35798082 35798437 -161396995 + RLTR15 LTR ERVK 1 343 -16 5 858 677 241 27 7 chr1 35798452 35798598 -161396834 + ORR1D2 LTR MaLR 226 374 0 5 858 1743 265 66 25 chr1 35798598 35799125 -161396307 + Lx7 LINE L1 5601 6149 -1547 5 858 396 0 0 0 chr1 35799126 35799170 -161396262 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 858 518 108 0 12 chr1 35799511 35799595 -161395837 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 858 201 311 0 0 chr1 35799605 35799650 -161395782 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 858 778 308 80 36 chr1 35799655 35799852 -161395580 - B4A SINE B4 0 292 90 5 858 342 0 0 0 chr1 35799852 35799890 -161395542 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 5 858 778 308 80 36 chr1 35799890 35799968 -161395464 - B4A SINE B4 -203 89 5 5 858 231 224 115 49 chr1 35800023 35800084 -161395348 - L1MC4 LINE L1 -1054 6988 6924 5 858 297 322 151 6 chr1 35800728 35800900 -161394532 - L1MC4 LINE L1 -1136 6906 6710 5 858 1496 275 53 89 chr1 35801135 35801685 -161393747 - MT2A LTR ERVL 0 533 4 5 858 431 345 81 42 chr1 35802127 35802363 -161393069 + MLT1B LTR MaLR 130 374 -16 5 858 1709 157 81 6 chr1 35802614 35802934 -161392498 + RMER16 LTR ERVK 190 533 0 5 858 328 330 82 52 chr1 35803041 35803274 -161392158 - L1ME3B LINE L1 -312 5928 5689 5 858 279 0 0 0 chr1 35803524 35803555 -161391877 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 858 501 97 0 0 chr1 35803555 35803627 -161391805 + (GGAAA)n Simple_repeat Simple_repeat 4 75 0 5 858 487 264 212 49 chr1 35804397 35804846 -161390586 - MT2A LTR ERVL -8 525 4 5 858 634 293 20 0 chr1 35804894 35805044 -161390388 + B3A SINE B2 2 154 -44 5 858 459 52 0 0 chr1 35805048 35805106 -161390326 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 858 23 33 0 0 chr1 35805106 35805136 -161390296 + AT_rich Low_complexity Low_complexity 1 30 0 5 858 825 148 0 0 chr1 35805140 35805262 -161390170 + B3 SINE B2 9 130 -86 5 858 216 0 0 0 chr1 35805306 35805330 -161390102 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 858 611 309 123 47 chr1 35806422 35806917 -161388515 - MT2A LTR ERVL 0 533 1 5 858 351 113 0 0 chr1 35807400 35807453 -161387979 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 5 858 397 195 26 0 chr1 35808003 35808080 -161387352 + Lx9 LINE L1 7385 7463 -181 5 858 405 95 0 0 chr1 35808090 35808153 -161387279 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 858 1852 179 31 6 chr1 35808159 35808519 -161386913 - ORR1C2 LTR MaLR -15 369 1 5 858 281 226 86 9 chr1 35808528 35808644 -161386788 + Lx9 LINE L1 7517 7641 -3 5 858 482 102 50 8 chr1 35808644 35808763 -161386669 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 858 21 0 0 0 chr1 35808966 35808987 -161386445 + AT_rich Low_complexity Low_complexity 1 21 0 5 858 1219 276 87 38 chr1 35809146 35809597 -161385835 - RMER5 LTR ERV1 -10 524 52 5 858 4831 42 50 3 chr1 35810111 35810714 -161384718 + L1Md_F2 LINE L1 5945 6575 -7 5 858 597 246 49 0 chr1 35810714 35810836 -161384596 + B1_Mur1 SINE Alu 21 148 -1 5 858 3210 132 33 98 chr1 35810865 35811569 -161383863 - RMER17B LTR ERVK 0 958 301 5 858 745 133 18 0 chr1 35811566 35811679 -161383753 - RMER17B LTR ERVK -843 115 1 5 858 255 337 19 38 chr1 35812487 35812592 -161382840 + MTE2b LTR MaLR 6 108 -271 5 858 461 293 93 32 chr1 35812676 35812923 -161382509 + RLTR15 LTR ERVK 82 343 -16 5 858 7760 72 5 1 chr1 35812995 35814115 -161381317 + L1_Mus1 LINE L1 5444 6567 0 5 858 507 206 83 9 chr1 35814128 35814236 -161381196 + MTE2b LTR MaLR 264 379 0 5 858 227 196 20 0 chr1 35814524 35814575 -161380857 + (CACCC)n Simple_repeat Simple_repeat 2 53 0 5 858 682 50 0 10 chr1 35814873 35814974 -161380458 - L1Md_F2 LINE L1 -12 6570 6471 5 858 1389 64 0 0 chr1 35814974 35815146 -161380286 + L1Md_F2 LINE L1 5961 6132 -450 5 858 1102 163 52 47 chr1 35815146 35815358 -161380074 + URR1B DNA MER1_type 13 225 0 5 858 231 211 0 0 chr1 35816539 35816591 -161378841 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 858 1132 90 62 87 chr1 35817057 35817252 -161378180 + B2_Mm2 SINE B2 2 191 -4 5 858 534 347 25 25 chr1 35817397 35817595 -161377837 - B4A SINE B4 -4 288 91 5 858 199 376 0 0 chr1 35817747 35817816 -161377616 - MIR SINE MIR -151 117 49 5 858 381 235 15 0 chr1 35817827 35817895 -161377537 - ID4_ SINE ID 0 83 15 5 858 852 261 98 70 chr1 35818056 35818456 -161376976 + RMER10A LTR ERVL 12 422 -20 5 858 656 126 29 10 chr1 35818446 35818550 -161376882 + U6 snRNA snRNA 1 106 -1 5 858 252 0 0 0 chr1 35818585 35818613 -161376819 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 858 2133 235 17 17 chr1 35819534 35820343 -161375089 + RMER1B Other Other 1 456 -574 5 858 4125 160 42 18 chr1 35820356 35821063 -161374369 + RMER1A Other Other 307 1030 0 5 858 992 318 104 29 chr1 35821164 35821644 -161373788 + MT2A LTR ERVL 1 516 -17 5 858 222 211 250 71 chr1 35822093 35822205 -161373227 - B3 SINE B2 0 216 85 5 858 1340 256 51 40 chr1 35822579 35822929 -161372503 + ORR1D2 LTR MaLR 9 362 -8 5 858 198 0 0 0 chr1 35823388 35823410 -161372022 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 858 180 0 0 0 chr1 35823410 35823429 -161372003 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 858 441 0 0 0 chr1 35823429 35823477 -161371955 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 858 189 178 0 0 chr1 35823485 35823530 -161371902 + GA-rich Low_complexity Low_complexity 1 45 0 5 858 264 243 162 0 chr1 35824159 35824233 -161371199 + LTR40b LTR ERVL 377 462 0 5 858 434 95 0 0 chr1 35824529 35824592 -161370840 - ORR1A2 LTR MaLR -264 63 1 5 858 1419 142 5 9 chr1 35824758 35824978 -161370454 + URR1B DNA MER1_type 6 224 -1 5 858 2779 128 28 72 chr1 35825213 35825716 -161369716 + RLTR28B LTR ERVL 1 481 0 5 858 231 133 0 0 chr1 35827744 35827789 -161367643 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 858 1084 245 70 51 chr1 35828091 35828461 -161366971 - MTE2b LTR MaLR -1 378 2 5 858 811 248 119 60 chr1 35829911 35830269 -161365163 + MTD LTR MaLR 1 379 0 5 858 2407 226 96 58 chr1 35830270 35831017 -161364415 + MTD-int LTR MaLR 2 777 -481 5 858 419 111 16 0 chr1 35831015 35831078 -161364354 + MTD LTR MaLR 344 407 -12 5 858 1059 251 146 15 chr1 35831103 35831438 -161363994 - MTEa LTR MaLR 0 379 1 5 858 252 0 0 0 chr1 35831933 35831961 -161363471 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 858 269 30 104 0 chr1 35831961 35832027 -161363405 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 858 198 143 0 0 chr1 35832027 35832062 -161363370 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 858 512 311 29 29 chr1 35832140 35832312 -161363120 - B4 SINE B4 -106 186 15 5 858 810 265 11 11 chr1 35832599 35832786 -161362646 + MT2A LTR ERVL 8 194 -339 5 858 786 216 140 5 chr1 35832961 35833147 -161362285 + MT2A LTR ERVL 194 404 -129 5 858 351 174 0 50 chr1 35833179 35833300 -161362132 + (TA)n Simple_repeat Simple_repeat 2 116 0 5 858 417 177 0 0 chr1 35833340 35833419 -161362013 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 858 281 60 0 162 chr1 35833419 35833499 -161361933 + MT2A LTR ERVL 467 533 0 5 858 294 287 153 5 chr1 35833647 35833843 -161361589 - L1M5 LINE L1 -450 5674 5450 5 858 702 0 0 0 chr1 35834096 35834174 -161361258 + (AGATG)n Simple_repeat Simple_repeat 3 80 0 5 858 257 216 20 0 chr1 35834676 35834727 -161360705 + MTE2b LTR MaLR 10 61 -318 5 858 216 204 0 20 chr1 35834931 35834981 -161360451 + CT-rich Low_complexity Low_complexity 1 49 0 5 858 285 362 20 0 chr1 35835107 35835256 -161360176 - L1MC4a LINE L1 -1 7881 7730 6 858 312 274 215 24 chr1 35835353 35835494 -161359938 - MTEa LTR MaLR -6 373 220 6 858 1444 138 0 18 chr1 35835494 35835723 -161359709 - URR1B DNA MER1_type 0 225 1 6 858 235 286 133 24 chr1 35835723 35835756 -161359676 - MTEa LTR MaLR -160 219 184 6 858 1058 278 59 31 chr1 35835880 35836236 -161359196 - MTEa LTR MaLR -11 368 3 6 858 1246 219 89 120 chr1 35836646 35837196 -161358236 + MT2A LTR ERVL 1 533 0 6 858 409 298 156 81 chr1 35837593 35837779 -161357653 - MTD LTR MaLR -35 386 187 6 858 1376 173 35 211 chr1 35838615 35838786 -161356646 + ORR1D1 LTR MaLR 1 177 -197 6 858 1262 50 6 16 chr1 35838786 35838968 -161356464 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 858 1376 173 35 211 chr1 35838968 35839250 -161356182 + ORR1D1 LTR MaLR 178 374 0 6 858 351 0 0 0 chr1 35839435 35839474 -161355958 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 858 776 266 136 18 chr1 35839555 35839834 -161355598 - MTD LTR MaLR -107 312 1 6 858 367 308 20 33 chr1 35839846 35839997 -161355435 + ORR1E LTR MaLR 7 155 -204 6 858 1036 283 114 27 chr1 35840255 35840702 -161354730 + RMER5 LTR ERV1 33 518 -16 6 858 351 208 0 40 chr1 35840835 35840910 -161354522 - ID4_ SINE ID -11 72 1 6 858 261 246 18 0 chr1 35841056 35841113 -161354319 + L2a LINE L2 3351 3408 -18 6 858 494 343 28 43 chr1 35841208 35841461 -161353971 + Lx8 LINE L1 7024 7272 -201 6 858 381 234 0 13 chr1 35842140 35842218 -161353214 + RSINE1 SINE B4 82 158 -7 6 858 518 294 20 7 chr1 35842660 35842807 -161352625 + MTE2b LTR MaLR 1 149 -230 6 858 540 265 101 6 chr1 35843237 35843412 -161352020 + MTE2b LTR MaLR 184 373 -6 6 858 392 322 60 27 chr1 35844312 35844497 -161350935 - B4A SINE B4 -101 191 1 6 858 31 26 0 0 chr1 35844693 35844731 -161350701 + AT_rich Low_complexity Low_complexity 1 38 0 6 858 568 308 55 64 chr1 35845099 35845335 -161350097 + MTEa LTR MaLR 14 247 -132 6 858 2920 24 0 43 chr1 35845349 35845701 -161349731 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 858 57431 17 17 1 chr1 35845701 35852074 -161343358 + IAPEz-int LTR ERVK 8 6481 0 6 858 2920 24 0 43 chr1 35852074 35852426 -161343006 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 858 198 0 0 0 chr1 35852475 35852497 -161342935 + (A)n Simple_repeat Simple_repeat 1 22 0 6 858 328 209 39 65 chr1 35852736 35852849 -161342583 + ID2 SINE ID 7 107 -45 6 858 490 344 160 41 chr1 35852881 35853288 -161342144 + L1MCa LINE L1 1036 1514 -4994 6 858 459 0 0 0 chr1 35853288 35853339 -161342093 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 858 490 344 160 41 chr1 35853339 35853589 -161341843 + L1MCa LINE L1 1515 1770 -4738 6 858 27 29 0 0 chr1 35853615 35853649 -161341783 + AT_rich Low_complexity Low_complexity 1 34 0 6 858 198 103 0 0 chr1 35853720 35853749 -161341683 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 858 436 333 153 20 chr1 35853751 35854005 -161341427 - B4A SINE B4 -4 288 1 6 858 549 296 33 28 chr1 35854123 35854335 -161341097 + L1MDa LINE L1 20 232 -6401 6 858 276 315 13 59 chr1 35854997 35855149 -161340283 + L1MDa LINE L1 1049 1193 -5440 6 858 681 106 0 0 chr1 35855218 35855322 -161340110 + (GGGA)n Simple_repeat Simple_repeat 1 104 0 6 858 211 217 66 16 chr1 35855369 35855430 -161340002 + (CATA)n Simple_repeat Simple_repeat 4 67 0 6 858 450 0 0 0 chr1 35855432 35855482 -161339950 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 6 858 22 0 0 0 chr1 35855490 35855512 -161339920 + AT_rich Low_complexity Low_complexity 1 22 0 6 858 504 361 7 33 chr1 35855642 35855854 -161339578 + B4A SINE B4 84 290 -2 6 858 222 301 27 0 chr1 35855909 35855982 -161339450 + GA-rich Low_complexity Low_complexity 4 78 0 6 858 499 316 102 28 chr1 35855985 35856036 -161339396 + L1MDa LINE L1 1540 1592 -5041 6 858 1005 123 0 0 chr1 35856036 35856215 -161339217 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 6 858 499 316 102 28 chr1 35856215 35856622 -161338810 + L1MDa LINE L1 1593 2031 -4602 6 858 802 228 48 0 chr1 35856685 35856852 -161338580 + B3A SINE B2 8 182 -16 6 858 284 229 35 35 chr1 35856943 35857029 -161338403 + Lx8 LINE L1 7386 7471 -2 6 858 836 261 79 56 chr1 35857054 35857364 -161338068 + L1MDa LINE L1 2102 2420 -4213 6 858 738 314 64 8 chr1 35857364 35857630 -161337802 + B4 SINE B4 2 282 -10 6 858 1067 282 97 26 chr1 35857630 35858318 -161337114 + L1MDa LINE L1 2421 3148 -3389 6 858 300 266 11 92 chr1 35858318 35858405 -161337027 - B3A SINE B2 -113 85 6 6 858 243 226 0 36 chr1 35858431 35858486 -161336946 - B4 SINE B4 -231 61 9 6 858 237 247 60 24 chr1 35858493 35858576 -161336856 - 4.5SRNA scRNA scRNA -4 90 5 6 858 781 203 0 13 chr1 35858587 35858742 -161336690 - ORR1D1 LTR MaLR -221 153 1 6 858 538 323 75 48 chr1 35858746 35858993 -161336439 + RMER5 LTR ERV1 134 391 -143 6 858 210 37 0 0 chr1 35858993 35859020 -161336412 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 6 858 538 323 75 48 chr1 35859020 35859065 -161336367 + RMER5 LTR ERV1 392 434 -100 6 858 424 311 16 8 chr1 35859095 35859218 -161336214 + RMER5 LTR ERV1 400 523 -11 6 858 1074 274 121 13 chr1 35859226 35859540 -161335892 + ORR1E LTR MaLR 9 356 -3 6 858 923 266 42 62 chr1 35860722 35860963 -161334469 - MTD LTR MaLR -14 405 170 6 858 1542 234 102 70 chr1 35861580 35862049 -161333383 + RMER5 LTR ERV1 49 532 -2 6 858 629 129 9 0 chr1 35862138 35862254 -161333178 + (GGA)n Simple_repeat Simple_repeat 1 117 0 6 858 236 344 16 0 chr1 35862343 35862407 -161333025 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 6 858 207 204 0 0 chr1 35862411 35862460 -161332972 + (TAA)n Simple_repeat Simple_repeat 2 50 0 6 858 390 74 0 0 chr1 35863347 35863401 -161332031 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 858 258 192 0 0 chr1 35863503 35863555 -161331877 + GA-rich Low_complexity Low_complexity 2 53 0 6 858 207 211 19 0 chr1 35863885 35863937 -161331495 + T-rich Low_complexity Low_complexity 3 55 0 6 858 260 275 58 65 chr1 35864932 35865208 -161330224 - RMER17C LTR ERVK -60 350 77 6 858 1238 75 11 0 chr1 35865208 35865382 -161330050 + (GAGAA)n Simple_repeat Simple_repeat 3 178 0 6 858 962 162 0 6 chr1 35865382 35865562 -161329870 + G-rich Low_complexity Low_complexity 2 180 0 6 858 788 190 0 6 chr1 35865598 35865767 -161329665 + G-rich Low_complexity Low_complexity 3 170 0 6 858 280 267 28 43 chr1 35867678 35867819 -161327613 + C-rich Low_complexity Low_complexity 1 139 0 6 858 225 0 0 0 chr1 35868162 35868187 -161327245 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 858 776 186 197 6 chr1 35868966 35869144 -161326288 + B3 SINE B2 1 212 -4 6 858 182 37 0 36 chr1 35869433 35869461 -161325971 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 858 288 0 0 0 chr1 35869781 35869813 -161325619 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 858 210 71 0 0 chr1 35869825 35869853 -161325579 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 6 858 4210 23 19 0 chr1 35869876 35870349 -161325083 + LTRIS_Mm LTR ERV1 1 482 0 6 858 890 262 242 80 chr1 35870427 35870754 -161324678 - MTD LTR MaLR -27 380 1 6 858 557 275 7 18 chr1 35870840 35871016 -161324416 + B4A SINE B4 84 250 -42 6 858 405 39 0 0 chr1 35871029 35871080 -161324352 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 858 885 277 72 0 chr1 35871102 35871351 -161324081 - B4 SINE B4 -22 270 4 6 858 508 262 165 16 chr1 35872206 35872400 -161323032 + B4 SINE B4 1 223 -69 6 858 295 264 120 114 chr1 35872434 35872569 -161322863 + B3A SINE B2 1 150 -45 6 858 201 121 0 0 chr1 35872569 35872602 -161322830 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 858 231 264 120 114 chr1 35872602 35872650 -161322782 + B2_Mm2 SINE B2 151 185 -10 6 858 432 285 7 74 chr1 35872659 35872807 -161322625 + RSINE1 SINE B4 6 143 -22 6 858 383 244 11 23 chr1 35873327 35873415 -161322017 - MTE2b LTR MaLR -281 98 12 6 858 366 123 0 0 chr1 35873656 35873713 -161321719 + (TTG)n Simple_repeat Simple_repeat 1 57 0 6 858 912 321 79 55 chr1 35873898 35874314 -161321118 + MT2A LTR ERVL 1 426 -107 6 858 276 241 12 60 chr1 35874862 35874946 -161320486 + B4 SINE B4 4 83 -209 6 858 615 306 30 20 chr1 35875860 35876060 -161319372 + RMER5 LTR ERV1 315 516 -18 6 858 1480 178 130 9 chr1 35876397 35876720 -161318712 + ORR1D1 LTR MaLR 5 366 -8 6 858 405 0 0 0 chr1 35876927 35876972 -161318460 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 858 650 248 30 48 chr1 35876975 35877140 -161318292 - B3A SINE B2 -36 162 1 6 858 381 111 0 0 chr1 35877511 35877565 -161317867 - URR1B DNA MER1_type -1 224 171 6 858 253 119 29 29 chr1 35877746 35877815 -161317617 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 6 858 319 209 72 62 chr1 35877965 35878062 -161317370 - RSINE1 SINE B4 -46 119 22 6 858 203 184 128 120 chr1 35878381 35878498 -161316934 + MIRc SINE MIR 30 147 -121 6 858 276 130 0 0 chr1 35878587 35878633 -161316799 + (ATG)n Simple_repeat Simple_repeat 1 46 0 6 858 226 180 0 32 chr1 35879265 35879328 -161316104 + (CAGCC)n Simple_repeat Simple_repeat 2 62 0 6 858 505 149 42 21 chr1 35880076 35880172 -161315260 - ID_B1 SINE B4 0 224 127 6 858 261 194 0 118 chr1 35880331 35880342 -161315090 - ZP3AR Satellite Satellite -109 103 68 6 858 376 172 0 0 chr1 35880342 35880400 -161315032 - ID SINE ID -166 58 1 6 858 261 0 0 0 chr1 35880720 35880749 -161314683 + (A)n Simple_repeat Simple_repeat 1 29 0 6 858 29 0 0 0 chr1 35880948 35880977 -161314455 + GC_rich Low_complexity Low_complexity 1 29 0 6 858 195 42 0 0 chr1 35882233 35882257 -161313175 + (CGGGG)n Simple_repeat Simple_repeat 1 24 0 6 858 252 0 0 0 chr1 35882677 35882705 -161312727 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 858 479 301 14 120 chr1 35882930 35883138 -161312294 - RMER30 DNA MER1_type -12 190 5 6 858 207 0 0 0 chr1 35883473 35883496 -161311936 + (CAGC)n Simple_repeat Simple_repeat 3 25 0 6 858 1837 158 172 0 chr1 35884487 35884842 -161310590 + MTD LTR MaLR 1 416 -3 6 858 972 293 50 21 chr1 35885491 35885685 -161309747 + B4 SINE B4 1 206 -86 6 858 2450 65 12 58 chr1 35885685 35886028 -161309404 - ORR1A2 LTR MaLR 0 327 1 6 858 972 293 50 21 chr1 35886028 35886112 -161309320 + B4 SINE B4 207 287 -5 6 858 1086 215 5 5 chr1 35886171 35886377 -161309055 + B3 SINE B2 1 206 -10 6 858 249 83 0 0 chr1 35886755 35886791 -161308641 + (TTA)n Simple_repeat Simple_repeat 2 37 0 6 858 475 303 124 15 chr1 35887072 35887401 -161308031 + L1MC LINE L1 4013 4378 -1768 6 858 329 328 135 4 chr1 35887474 35887704 -161307728 + L1MC LINE L1 4507 4766 -1380 6 858 775 244 100 130 chr1 35887759 35888150 -161307282 + MTE2a LTR MaLR 1 379 0 7 858 507 329 0 79 chr1 35888456 35888634 -161306798 - RSINE1 SINE B4 0 165 2 7 858 319 202 12 12 chr1 35888697 35888782 -161306650 + CT-rich Low_complexity Low_complexity 3 87 0 7 858 227 209 72 29 chr1 35888807 35888876 -161306556 - ID_B1 SINE B4 -39 185 114 7 858 315 0 0 0 chr1 35889465 35889500 -161305932 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 858 189 0 0 0 chr1 35889718 35889739 -161305693 + (A)n Simple_repeat Simple_repeat 1 21 0 7 858 1319 195 69 79 chr1 35890174 35890478 -161304954 + L1_Rod LINE L1 930 1241 -6367 7 858 1828 36 5 0 chr1 35890478 35890699 -161304733 + L1Md_T LINE L1 6361 6582 0 7 858 5528 251 97 79 chr1 35890699 35892433 -161302999 + L1_Rod LINE L1 1236 2938 -2909 7 858 239 0 32 0 chr1 35892433 35892464 -161302968 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 858 5528 255 98 79 chr1 35892464 35893026 -161302406 + L1_Rod LINE L1 2939 3585 -2262 7 858 186 43 0 0 chr1 35893026 35893049 -161302383 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 7 858 5528 255 98 79 chr1 35893049 35893392 -161302040 + L1_Rod LINE L1 3586 3922 -1925 7 858 635 253 23 17 chr1 35893445 35893622 -161301810 - Lx9 LINE L1 -1675 5969 5792 7 858 486 254 92 0 chr1 35893623 35893765 -161301667 - L1_Rod LINE L1 -3424 2423 2269 7 858 314 274 90 53 chr1 35893765 35893954 -161301478 - RLTR15 LTR ERVK -7 352 157 7 858 546 16 0 0 chr1 35893956 35894019 -161301413 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 858 238 185 17 69 chr1 35894030 35894088 -161301344 - RLTR11A2 LTR ERVK -360 167 113 7 858 3674 233 49 25 chr1 35894114 35895432 -161300000 - L1_Rod LINE L1 -3596 2251 901 7 858 692 358 74 27 chr1 35895645 35895986 -161299446 - RMER15-int LTR ERVL -4508 491 131 7 858 468 0 0 0 chr1 35895986 35896038 -161299394 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 858 692 358 74 27 chr1 35896038 35896141 -161299291 - RMER15-int LTR ERVL -4869 130 26 7 858 586 256 242 24 chr1 35896162 35896410 -161299022 - RMER15 LTR ERVL -1 574 273 7 858 597 333 5 21 chr1 35896696 35896886 -161298546 - B4A SINE B4 0 292 106 7 858 1162 270 76 32 chr1 35896890 35897231 -161298201 + MTE2a LTR MaLR 4 359 -20 7 858 523 7 0 136 chr1 35897361 35897538 -161297894 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 7 858 252 215 41 19 chr1 35898976 35899052 -161296380 - MIR SINE MIR -79 189 117 7 858 181 275 0 0 chr1 35899147 35899187 -161296245 - MIR SINE MIR -65 143 104 7 858 745 285 47 101 chr1 35899530 35899807 -161295625 + B4 SINE B4 18 279 -13 7 858 2823 177 35 19 chr1 35899810 35900328 -161295104 - MT2A LTR ERVL -7 526 1 7 858 785 311 37 88 chr1 35900950 35901246 -161294186 + B4 SINE B4 2 282 -10 7 858 339 155 24 12 chr1 35901608 35901693 -161293739 + CT-rich Low_complexity Low_complexity 1 86 0 7 858 384 111 0 0 chr1 35902285 35902348 -161293084 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 858 229 304 24 60 chr1 35902380 35902464 -161292968 - MIRb SINE MIR -123 145 65 7 858 240 262 66 0 chr1 35902507 35902568 -161292864 - MIRc SINE MIR -87 181 117 7 858 673 311 13 74 chr1 35902608 35902837 -161292595 + B4 SINE B4 72 286 -6 7 858 401 283 25 6 chr1 35903972 35904132 -161291300 + (TGGA)n Simple_repeat Simple_repeat 2 164 0 7 858 211 309 20 20 chr1 35904156 35904255 -161291177 + (TGAA)n Simple_repeat Simple_repeat 3 101 0 7 858 967 238 20 92 chr1 35904427 35904732 -161290700 + B4 SINE B4 10 292 0 7 858 270 319 0 0 chr1 35904732 35904870 -161290562 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 858 205 342 113 13 chr1 35905252 35905403 -161290029 - L3 LINE CR1 -1077 3412 3247 7 858 1192 270 40 27 chr1 35905801 35906174 -161289258 - MTEb LTR MaLR -1 378 1 7 858 671 254 58 129 chr1 35907306 35907600 -161287832 - B4 SINE B4 -18 274 2 7 858 230 81 27 0 chr1 35908445 35908482 -161286950 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 7 858 885 280 20 0 chr1 35908505 35908705 -161286727 - B4 SINE B4 -4 288 85 7 858 207 0 0 0 chr1 35909069 35909092 -161286340 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 858 753 12 0 0 chr1 35909244 35909330 -161286102 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 7 858 632 244 122 13 chr1 35910517 35910771 -161284661 + MTE2b LTR MaLR 31 379 0 7 858 766 270 107 133 chr1 35911072 35911130 -161284302 - MTE2a LTR MaLR 0 379 324 7 858 1379 82 16 5 chr1 35911130 35911315 -161284117 + B2_Mm2 SINE B2 2 188 -7 7 858 766 270 107 133 chr1 35911315 35911640 -161283792 - MTE2a LTR MaLR -56 323 6 7 858 717 301 25 22 chr1 35913312 35913587 -161281845 + B4A SINE B4 2 277 -15 7 859 188 245 0 39 chr1 35913759 35913810 -161281622 - L2 LINE L2 -665 2754 2706 7 859 288 0 0 0 chr1 35913958 35913990 -161281442 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 859 307 311 119 15 chr1 35913994 35914128 -161281304 - L2 LINE L2 -859 2560 2413 7 859 576 339 143 58 chr1 35914682 35914842 -161280590 - L1MC LINE L1 -750 5396 5230 7 859 1084 58 58 0 chr1 35914842 35914981 -161280451 - B1_Mm SINE Alu 0 147 1 7 859 576 339 143 58 chr1 35914981 35915212 -161280220 - L1MC LINE L1 -917 5229 4984 7 859 842 235 177 51 chr1 35915212 35915584 -161279848 - MTD LTR MaLR 0 419 1 7 859 576 339 143 58 chr1 35915584 35916058 -161279374 - L1MC LINE L1 -1163 4983 4457 7 859 201 147 0 0 chr1 35916171 35916205 -161279227 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 859 1893 156 76 25 chr1 35916687 35917055 -161278377 - MTC LTR MaLR -8 413 27 7 859 246 330 163 11 chr1 35917131 35917190 -161278242 - L1M5 LINE L1 -2402 3744 3683 7 859 216 0 0 0 chr1 35917190 35917214 -161278218 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 859 246 330 163 11 chr1 35917214 35917344 -161278088 - L1M5 LINE L1 -2464 3682 3526 7 859 725 262 89 26 chr1 35917450 35917720 -161277712 - B4A SINE B4 -4 288 2 7 859 234 309 19 9 chr1 35917725 35917833 -161277599 - L1M2 LINE L1 -2643 3500 3392 7 859 360 277 232 15 chr1 35917892 35918090 -161277342 - L1M5 LINE L1 -2976 3170 2930 7 859 393 22 0 0 chr1 35918264 35918310 -161277122 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 859 279 0 0 0 chr1 35918310 35918340 -161277092 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 859 577 322 63 25 chr1 35918367 35918606 -161276826 - B4A SINE B4 -16 276 29 7 859 953 242 125 0 chr1 35919461 35919717 -161275715 - B4 SINE B4 -4 288 1 7 859 1115 221 48 113 chr1 35920001 35920288 -161275144 + ORR1D2 LTR MaLR 1 264 -106 7 859 2831 69 67 3 chr1 35920288 35920664 -161274768 - MTB LTR MaLR 0 400 1 7 859 1115 221 48 113 chr1 35920664 35920713 -161274719 + ORR1D2 LTR MaLR 265 315 -55 7 859 760 265 0 57 chr1 35920690 35920854 -161274578 - MTEa LTR MaLR -181 198 43 7 859 1360 116 36 44 chr1 35920854 35921079 -161274353 - URR1A DNA MER1_type 0 226 4 7 859 760 265 0 57 chr1 35921079 35921106 -161274326 - MTEa LTR MaLR -337 42 18 7 859 561 307 20 171 chr1 35921445 35921802 -161273630 + MTE2b LTR MaLR 2 304 -75 7 859 525 196 29 19 chr1 35921808 35921912 -161273520 + MTE2b LTR MaLR 274 378 -1 7 859 310 308 11 21 chr1 35922383 35922476 -161272956 + MTEa LTR MaLR 288 379 0 7 859 1153 244 28 52 chr1 35922477 35922802 -161272630 + MTD LTR MaLR 1 317 -102 7 859 475 180 156 11 chr1 35922782 35922872 -161272560 + B4 SINE B4 167 269 -23 7 859 273 57 0 0 chr1 35922874 35922909 -161272523 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 859 21 0 0 0 chr1 35924003 35924024 -161271408 + AT_rich Low_complexity Low_complexity 1 21 0 7 859 665 269 26 118 chr1 35924061 35924254 -161271178 + B4A SINE B4 48 237 -55 7 859 3589 15 2 0 chr1 35924254 35924649 -161270783 - MTA_Mm LTR MaLR 0 396 1 7 859 9312 33 4 1 chr1 35924649 35925744 -161269688 - MTA_Mm-int LTR MaLR 0 1098 1 7 859 3571 18 2 0 chr1 35925744 35926139 -161269293 - MTA_Mm LTR MaLR 0 396 1 7 859 665 269 26 118 chr1 35926139 35926213 -161269219 + B4A SINE B4 238 290 -2 7 859 454 289 79 94 chr1 35927148 35927553 -161267879 - RMER10A LTR ERVL -25 417 19 7 859 529 294 17 50 chr1 35927966 35928083 -161267349 + MLT1B LTR MaLR 2 118 -272 7 859 7261 64 5 0 chr1 35928083 35928972 -161266460 + RLTR13B1 LTR ERVK 1 893 0 7 859 529 294 17 50 chr1 35928972 35929033 -161266399 + MLT1B LTR MaLR 119 174 -216 7 859 358 286 162 22 chr1 35929045 35929181 -161266251 + B4A SINE B4 21 175 -117 7 859 234 0 0 0 chr1 35929182 35929208 -161266224 + (TAA)n Simple_repeat Simple_repeat 2 27 0 7 859 214 217 29 0 chr1 35929326 35929395 -161266037 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 859 266 363 29 73 chr1 35929406 35929611 -161265821 + MLT1B LTR MaLR 163 358 -32 7 859 1084 264 100 10 chr1 35930745 35931083 -161264349 + MTE2a LTR MaLR 46 402 -17 7 859 201 155 34 17 chr1 35931178 35931237 -161264195 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 7 859 195 114 0 0 chr1 35931432 35931467 -161263965 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 859 571 215 12 0 chr1 35931484 35931656 -161263776 + CT-rich Low_complexity Low_complexity 1 174 0 7 859 323 291 12 12 chr1 35931701 35931781 -161263651 - B4 SINE B4 0 292 213 7 859 268 256 0 13 chr1 35932878 35932957 -161262475 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 859 183 42 0 0 chr1 35933178 35933202 -161262230 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 859 614 271 16 0 chr1 35933289 35933418 -161262014 - B4 SINE B4 -81 211 81 7 859 497 144 0 11 chr1 35933442 35933448 -161261984 + (TA)n Simple_repeat Simple_repeat 2 7 0 7 859 192 125 0 0 chr1 35933448 35933480 -161261952 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 7 859 497 144 0 11 chr1 35933480 35933564 -161261868 + (TA)n Simple_repeat Simple_repeat 2 85 0 7 859 320 275 43 60 chr1 35933663 35933779 -161261653 - PB1D10 SINE Alu -1 116 3 7 859 371 264 0 0 chr1 35933925 35933997 -161261435 - ID SINE ID -152 72 1 7 859 296 48 24 0 chr1 35934164 35934206 -161261226 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 859 1970 182 57 11 chr1 35934451 35934817 -161260615 + MTC LTR MaLR 3 385 -36 7 859 921 116 6 12 chr1 35934822 35934988 -161260444 + (TTC)n Simple_repeat Simple_repeat 3 167 0 7 859 1432 40 0 0 chr1 35934988 35935162 -161260270 - BGLII LTR ERVK -247 174 1 7 859 742 288 195 3 chr1 35935162 35935499 -161259933 - MLT2B4 LTR ERVL -127 429 28 7 859 1034 276 32 14 chr1 35935912 35935999 -161259433 - MTE2a LTR MaLR -95 284 195 7 859 243 88 0 0 chr1 35935999 35936033 -161259399 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 7 859 1034 276 32 14 chr1 35936033 35936224 -161259208 - MTE2a LTR MaLR -185 194 1 7 859 1930 172 80 3 chr1 35936895 35937245 -161258187 - ORR1C1 LTR MaLR 0 378 2 7 859 459 0 0 0 chr1 35937248 35937299 -161258133 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 859 420 20 0 0 chr1 35937299 35937347 -161258085 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 859 198 246 88 0 chr1 35937625 35937682 -161257750 + MIRb SINE MIR 134 195 -73 7 859 373 186 0 5 chr1 35937934 35938015 -161257417 + MTE2b LTR MaLR 298 375 -4 8 859 1186 61 0 0 chr1 35938017 35938164 -161257268 + B1_Mus1 SINE Alu 2 148 0 8 859 189 107 0 0 chr1 35938164 35938192 -161257240 + (A)n Simple_repeat Simple_repeat 1 28 0 8 859 2196 94 3 51 chr1 35938251 35938586 -161256846 - ORR1A2 LTR MaLR -8 319 1 8 859 890 243 99 5 chr1 35939613 35939824 -161255608 + B4A SINE B4 1 231 -61 8 859 316 188 60 0 chr1 35940080 35940213 -161255219 + (CA)n Simple_repeat Simple_repeat 2 142 0 8 859 294 193 72 0 chr1 35940239 35940405 -161255027 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 859 260 328 61 54 chr1 35941230 35941510 -161253922 + B4 SINE B4 1 282 -10 8 859 856 123 22 18 chr1 35941709 35941938 -161253494 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 8 859 474 299 107 42 chr1 35941955 35942217 -161253215 - B4A SINE B4 -6 286 8 8 859 342 212 0 0 chr1 35942253 35942319 -161253113 - MIR SINE MIR -124 138 73 8 859 1176 45 22 11 chr1 35943519 35943697 -161251735 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 8 859 279 330 104 0 chr1 35943739 35943845 -161251587 + MER63D DNA AcHobo 35 151 -910 8 859 311 208 76 30 chr1 35943862 35943961 -161251471 - ORR1E LTR MaLR 0 379 259 8 859 406 202 11 106 chr1 35943955 35943990 -161251442 + B4 SINE B4 191 223 -69 8 859 480 35 0 0 chr1 35943990 35944048 -161251384 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 8 859 406 202 11 106 chr1 35944048 35944106 -161251326 + B4 SINE B4 224 275 -17 8 859 413 267 151 0 chr1 35944643 35944789 -161250643 + MTEa LTR MaLR 1 168 -211 8 859 4372 133 58 79 chr1 35944844 35945652 -161249780 - RMER19B LTR ERVK -87 815 25 8 859 630 289 16 43 chr1 35945655 35945843 -161249589 + MTEa LTR MaLR 195 377 -2 8 859 1183 282 30 15 chr1 35946412 35946750 -161248682 - ORR1E LTR MaLR -15 344 2 8 859 237 243 0 91 chr1 35947577 35947654 -161247778 - L2b LINE L2 -17 3358 3289 8 859 218 56 28 0 chr1 35948063 35948099 -161247333 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 8 859 367 272 0 0 chr1 35948346 35948427 -161247005 + B4A SINE B4 2 82 -210 8 859 235 326 10 31 chr1 35948427 35948444 -161246988 + B3A SINE B2 2 97 -101 8 859 495 159 101 11 chr1 35948921 35949010 -161246422 + MTC LTR MaLR 325 421 0 8 859 207 163 47 0 chr1 35949719 35949762 -161245670 + CT-rich Low_complexity Low_complexity 4 48 0 8 859 395 320 91 14 chr1 35950345 35950554 -161244878 - RMER15 LTR ERVL -15 560 336 8 859 1696 185 229 48 chr1 35951629 35952213 -161243219 - RMER6C LTR ERVK 0 690 1 8 859 2345 94 3 0 chr1 35952398 35952716 -161242716 - ORR1A2 LTR MaLR -8 319 1 8 859 343 306 16 47 chr1 35952771 35952898 -161242534 + ID_B1 SINE B4 99 221 -3 8 859 270 295 0 1 chr1 35952912 35952965 -161242467 + ID4_ SINE ID 1 52 -100 8 859 2541 31 2 274 chr1 35952965 35953495 -161241937 + RLTR10 LTR ERVK 1 386 -4 8 859 236 329 0 38 chr1 35953495 35953528 -161241904 + BC1_Mm scRNA scRNA 53 84 -68 8 859 6793 47 56 55 chr1 35953528 35954468 -161240964 + RLTR10-int LTR ERVK 58 998 -989 8 859 336 256 62 39 chr1 35954532 35954662 -161240770 + RLTR10-int LTR ERVK 1462 1594 -5987 8 859 8972 13 7 1 chr1 35954744 35955731 -161239701 + RLTR10-int LTR ERVK 992 1984 -3 8 859 2625 28 2 271 chr1 35955733 35956267 -161239165 + RLTR10 LTR ERVK 1 390 0 8 859 1401 283 45 14 chr1 35956855 35957424 -161238008 - L1M4c LINE L1 -1873 5133 4542 8 859 935 164 7 0 chr1 35957424 35957570 -161237862 - B1_Mus1 SINE Alu -1 147 1 8 859 677 340 116 23 chr1 35957570 35957798 -161237634 - L1M4c LINE L1 -2465 4541 4276 8 859 532 235 23 11 chr1 35957803 35957931 -161237501 + ORR1E LTR MaLR 3 132 -252 8 859 819 157 30 7 chr1 35958433 35958568 -161236864 - B1_Mur1 SINE Alu -1 148 11 8 859 456 290 30 66 chr1 35958450 35958616 -161236816 - MT2B LTR ERVL -319 282 123 8 859 312 308 119 46 chr1 35958618 35958945 -161236487 - L1M4c LINE L1 -3552 3454 3104 8 859 339 305 138 0 chr1 35959485 35959659 -161235773 + RMER15 LTR ERVL 342 539 -36 8 859 721 274 100 37 chr1 35959682 35960090 -161235342 - L1M4c LINE L1 -4406 2696 2228 8 859 603 250 0 33 chr1 35960094 35960247 -161235185 - B1_Mur1 SINE Alu -1 148 1 8 859 201 139 0 0 chr1 35960290 35960333 -161235099 + (CCA)n Simple_repeat Simple_repeat 2 44 0 8 859 1604 45 5 0 chr1 35960342 35960540 -161234892 + L1Md_T LINE L1 6384 6582 0 8 859 722 256 94 29 chr1 35960940 35961185 -161234247 + RMER15 LTR ERVL 273 533 -42 8 859 329 320 73 27 chr1 35961211 35961687 -161233745 - L1M4c LINE L1 -5102 1802 1234 8 859 569 162 9 0 chr1 35961953 35962064 -161233368 + CT-rich Low_complexity Low_complexity 1 112 0 8 859 1741 118 26 8 chr1 35962115 35962380 -161233052 - ORR1A3 LTR MaLR -9 317 48 8 859 24 0 0 0 chr1 35962939 35962963 -161232469 + GC_rich Low_complexity Low_complexity 1 24 0 8 859 658 301 89 64 chr1 35963113 35963282 -161232150 - B4 SINE B4 -2 290 107 8 859 3174 155 43 21 chr1 35963282 35963842 -161231590 + RMER15 LTR ERVL 1 572 -3 8 859 658 301 89 64 chr1 35963842 35963952 -161231480 - B4 SINE B4 -186 106 4 8 859 225 269 61 98 chr1 35963952 35964080 -161231352 - MLT1E LTR MaLR -108 545 423 8 859 561 252 86 7 chr1 35964292 35964430 -161231002 - RMER15 LTR ERVL 0 575 426 8 859 1197 237 112 16 chr1 35964430 35964743 -161230689 - ORR1D2 LTR MaLR 0 370 28 8 859 1024 261 113 14 chr1 35964718 35965002 -161230430 - ORR1D2 LTR MaLR -58 312 1 8 859 1047 259 54 7 chr1 35965002 35965278 -161230154 - RMER15 LTR ERVL -146 429 141 8 859 432 147 0 0 chr1 35966150 35966225 -161229207 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 859 380 306 65 24 chr1 35966251 35966375 -161229057 - B4A SINE B4 -2 290 162 8 859 502 274 24 73 chr1 35966586 35966705 -161228727 - RSINE1 SINE B4 -1 164 52 8 859 2595 55 3 58 chr1 35966705 35967050 -161228382 + ORR1A2 LTR MaLR 2 327 0 8 859 502 274 24 73 chr1 35967050 35967095 -161228337 - RSINE1 SINE B4 -114 51 9 8 859 964 248 68 20 chr1 35967125 35967376 -161228056 - RMER5 LTR ERV1 0 534 272 8 859 1012 139 6 6 chr1 35967408 35967567 -161227865 + URR1A DNA MER1_type 68 226 0 8 859 435 264 16 24 chr1 35967634 35967758 -161227674 - RMER5 LTR ERV1 -363 171 49 8 859 384 22 0 0 chr1 35968061 35968106 -161227326 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 859 387 141 0 0 chr1 35968638 35968716 -161226716 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 859 3985 242 71 44 chr1 35968959 35969026 -161226406 + Lx9 LINE L1 6329 6395 -1249 8 859 234 0 0 0 chr1 35969026 35969052 -161226380 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 859 3985 242 71 44 chr1 35969052 35970217 -161225215 + Lx9 LINE L1 6396 7595 -49 8 859 490 283 40 120 chr1 35970282 35970607 -161224825 - RLTR23 LTR ERV1 -39 391 93 8 859 812 212 107 41 chr1 35970741 35970938 -161224494 + MTD LTR MaLR 196 405 -14 8 859 378 371 52 13 chr1 35970958 35971180 -161224252 - MLT1A LTR MaLR -131 234 1 8 859 1248 231 83 114 chr1 35971517 35971903 -161223529 - MTE2a LTR MaLR 0 379 6 8 859 1363 97 0 21 chr1 35971903 35972093 -161223339 + B2_Mm2 SINE B2 3 188 -7 8 859 529 208 66 16 chr1 35972202 35972324 -161223108 + RLTR18B LTR ERVK 1 128 -488 8 859 22 0 0 0 chr1 35972335 35972357 -161223075 + AT_rich Low_complexity Low_complexity 1 22 0 8 859 1625 209 107 68 chr1 35972359 35972827 -161222605 - RLTR11A LTR ERVK -41 487 2 8 859 1347 194 21 124 chr1 35972903 35973053 -161222379 + RLTR18B LTR ERVK 160 283 -333 8 859 1138 90 5 136 chr1 35973053 35973259 -161222173 + B2_Mm1a SINE B2 1 179 -14 8 859 1347 248 21 56 chr1 35973259 35973496 -161221936 + RLTR18B LTR ERVK 283 507 -5 8 859 2333 106 16 3 chr1 35974622 35974945 -161220487 + ORR1A2 LTR MaLR 1 327 0 8 859 218 32 32 0 chr1 35975488 35975519 -161219913 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 8 859 282 354 47 27 chr1 35975538 35975686 -161219746 - MER77 LTR ERVL -50 557 407 8 859 185 314 57 38 chr1 35975690 35975796 -161219636 + L3 LINE CR1 3514 3621 -868 8 859 521 284 36 36 chr1 35975979 35976118 -161219314 + B4A SINE B4 154 292 0 8 859 294 171 0 0 chr1 35976121 35976191 -161219241 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 859 27 49 0 0 chr1 35976194 35976235 -161219197 + AT_rich Low_complexity Low_complexity 1 41 0 8 859 702 113 0 0 chr1 35976306 35976412 -161219020 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 8 859 213 348 43 0 chr1 35976921 35976990 -161218442 + MIRb SINE MIR 108 179 -89 8 859 219 247 0 0 chr1 35977548 35977621 -161217811 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 859 730 228 212 30 chr1 35977640 35977871 -161217561 - B4A SINE B4 0 292 20 8 859 215 190 17 0 chr1 35979147 35979205 -161216227 + CT-rich Low_complexity Low_complexity 2 60 0 8 859 237 202 24 16 chr1 35979226 35979352 -161216080 + (TCTCTG)n Simple_repeat Simple_repeat 2 128 0 8 859 341 282 0 0 chr1 35979355 35979458 -161215974 + (TG)n Simple_repeat Simple_repeat 2 104 0 8 859 765 163 0 0 chr1 35979459 35979937 -161215495 + CT-rich Low_complexity Low_complexity 1 478 0 8 859 262 295 25 115 chr1 35979988 35980145 -161215287 + MTEa LTR MaLR 232 374 -5 8 859 953 255 128 32 chr1 35981554 35981866 -161213566 + RMER15 LTR ERVL 216 557 -18 8 859 649 240 169 15 chr1 35981894 35982089 -161213343 + ORR1D2 LTR MaLR 146 370 0 8 859 392 313 43 29 chr1 35982089 35982227 -161213205 - B4 SINE B4 -151 141 2 8 859 449 208 21 10 chr1 35983420 35983517 -161211915 - RMER30 DNA MER1_type 0 202 105 8 859 1046 182 112 10 chr1 35983855 35984060 -161211372 + URR1A DNA MER1_type 1 226 0 8 859 383 248 69 0 chr1 35984260 35984361 -161211071 + RSINE1 SINE B4 58 165 0 8 859 220 260 0 0 chr1 35984362 35984412 -161211020 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 859 366 143 0 0 chr1 35984412 35984475 -161210957 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 859 660 276 75 46 chr1 35984515 35984796 -161210636 + B4A SINE B4 3 291 -1 8 859 376 244 39 0 chr1 35984798 35984876 -161210556 - RMER30 DNA MER1_type -120 82 2 8 859 1082 241 154 9 chr1 35984890 35985208 -161210224 - MTD LTR MaLR -14 405 42 8 859 263 333 32 49 chr1 35985423 35985546 -161209886 + MIR SINE MIR 23 143 -119 8 859 733 263 93 0 chr1 35985759 35985964 -161209468 + ID_B1 SINE B4 1 224 0 8 859 261 286 16 0 chr1 35985974 35986037 -161209395 + polypurine Low_complexity Low_complexity 5 68 0 8 859 215 61 0 29 chr1 35986160 35986194 -161209238 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 8 859 262 347 29 39 chr1 35986258 35986360 -161209072 - PB1D10 SINE Alu -16 101 1 8 859 180 0 0 0 chr1 35986397 35986417 -161209015 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 859 863 226 26 0 chr1 35986510 35986700 -161208732 - B3A SINE B2 0 198 4 9 859 903 245 47 14 chr1 35986709 35986920 -161208512 - B4 SINE B4 -67 225 8 9 859 360 280 0 0 chr1 35986961 35987036 -161208396 - MER2 DNA MER2_type 0 345 271 9 859 286 328 148 0 chr1 35987121 35987243 -161208189 - MER2 DNA MER2_type -205 140 1 9 859 427 296 8 42 chr1 35987535 35987655 -161207777 + RSINE1 SINE B4 50 165 0 9 859 214 260 0 0 chr1 35987672 35987722 -161207710 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 859 196 53 53 0 chr1 35987796 35987834 -161207598 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 9 859 1085 62 0 0 chr1 35988341 35988470 -161206962 + B1_Mus1 SINE Alu 3 131 -17 9 859 642 227 78 26 chr1 35989257 35989411 -161206021 + RSINE1 SINE B4 2 163 -2 9 859 854 273 19 83 chr1 35989429 35989469 -161205963 + B4 SINE B4 16 55 -237 9 859 2207 103 51 13 chr1 35989469 35989784 -161205648 - ORR1A2 LTR MaLR 0 327 1 9 859 854 273 19 83 chr1 35989784 35990007 -161205425 + B4 SINE B4 56 262 -30 9 859 205 341 12 12 chr1 35990066 35990152 -161205280 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 9 859 236 228 35 0 chr1 35990073 35990130 -161205302 + (TATG)n Simple_repeat Simple_repeat 1 59 0 9 859 350 288 85 0 chr1 35991505 35991623 -161203809 - MLT1C LTR MaLR -9 458 331 9 859 505 245 104 168 chr1 35991656 35991965 -161203467 - B4A SINE B4 -1 291 3 9 859 298 272 79 16 chr1 35991975 35992102 -161203330 - MLT1C LTR MaLR -310 157 23 9 859 198 0 0 0 chr1 35992233 35992255 -161203177 + (A)n Simple_repeat Simple_repeat 1 22 0 9 859 309 389 55 5 chr1 35992593 35992792 -161202640 - MLT1H1 LTR MaLR -9 546 338 9 859 216 0 0 0 chr1 35992865 35992889 -161202543 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 859 363 73 0 0 chr1 35992918 35992973 -161202459 + (TC)n Simple_repeat Simple_repeat 1 55 0 9 859 321 26 0 0 chr1 35993016 35993054 -161202378 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 859 512 308 164 28 chr1 35993063 35993240 -161202192 - ID_B1 SINE B4 -15 209 9 9 859 352 231 70 5 chr1 35993887 35993998 -161201434 + L1MD LINE L1 4700 4848 -1298 9 859 288 0 0 0 chr1 35994013 35994045 -161201387 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 859 378 0 0 0 chr1 35994045 35994086 -161201346 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 859 537 16 0 0 chr1 35994093 35994155 -161201277 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 9 859 21 0 0 0 chr1 35994159 35994180 -161201252 + AT_rich Low_complexity Low_complexity 1 21 0 9 859 326 268 11 11 chr1 35994243 35994330 -161201102 + B4 SINE B4 5 91 -201 9 859 556 245 68 20 chr1 35994409 35994517 -161200915 + B4 SINE B4 108 213 -79 9 859 246 62 0 0 chr1 35994517 35994549 -161200883 + (CAG)n Simple_repeat Simple_repeat 1 32 0 9 859 556 245 68 20 chr1 35994549 35994586 -161200846 + B4 SINE B4 214 259 -33 9 859 315 49 0 0 chr1 35994594 35994635 -161200797 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 859 750 246 30 12 chr1 35994741 35994910 -161200522 - B3A SINE B2 0 198 27 9 859 250 100 60 0 chr1 35994910 35994960 -161200472 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 9 859 2174 143 6 20 chr1 35994960 35995316 -161200116 - Lx4A LINE L1 0 7058 6708 9 859 1012 237 78 95 chr1 35995357 35995716 -161199716 + MTE2a LTR MaLR 10 362 -17 9 859 421 277 88 50 chr1 35995727 35995989 -161199443 - L1MB1 LINE L1 -21 6147 5876 9 859 690 206 98 44 chr1 35996092 35996275 -161199157 + RMER30 DNA MER1_type 8 200 -2 9 859 419 310 23 15 chr1 35996455 35996586 -161198846 - ID_B1 SINE B4 0 224 93 9 859 722 164 12 12 chr1 35996964 35997131 -161198301 + (TG)n Simple_repeat Simple_repeat 2 168 0 9 859 520 309 116 23 chr1 35997138 35997353 -161198079 - B4 SINE B4 0 292 58 9 859 481 239 6 150 chr1 35997328 35997495 -161197937 - B1_Mur2 SINE Alu -5 144 2 9 859 508 304 18 76 chr1 35997495 35997586 -161197846 - B4A SINE B4 -205 87 7 9 859 303 253 39 26 chr1 35997707 35997784 -161197648 - L1MEf LINE L1 -4134 2066 1989 9 859 939 136 7 7 chr1 35997797 35997938 -161197494 - B1_Mur3 SINE Alu -7 142 2 9 859 379 284 21 10 chr1 35998051 35998147 -161197285 + B4 SINE B4 54 150 -142 9 859 195 42 0 0 chr1 35998158 35998182 -161197250 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 859 319 246 0 16 chr1 35998190 35998252 -161197180 + B4 SINE B4 232 292 0 9 859 356 259 0 0 chr1 35998344 35998425 -161197007 + ID2 SINE ID 1 81 -2 9 859 219 321 0 0 chr1 35999896 35999952 -161195480 + B4 SINE B4 12 67 -225 9 859 253 204 0 20 chr1 35999950 36000000 -161195432 - ORR1D2 LTR MaLR -246 124 76 9 859 461 176 0 0 chr1 36000000 36000074 -161195358 - ORR1D2 LTR MaLR -295 75 2 1 859 231 214 0 0 chr1 36000570 36000626 -161194806 + T-rich Low_complexity Low_complexity 1 56 0 2 859 770 270 59 15 chr1 36000723 36000994 -161194438 - B4 SINE B4 -5 287 5 3 859 537 16 0 0 chr1 36001085 36001147 -161194285 + (TTG)n Simple_repeat Simple_repeat 2 63 0 4 859 258 32 0 0 chr1 36001593 36001624 -161193808 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 859 697 317 68 44 chr1 36001633 36001884 -161193548 - B4A SINE B4 0 292 36 6 859 2287 167 48 107 chr1 36002449 36003222 -161192210 - RMER6C LTR ERVK -2 754 57 7 859 1435 182 98 103 chr1 36004086 36004454 -161190978 - MTEb LTR MaLR -13 366 1 8 859 260 285 64 16 chr1 36005242 36005367 -161190065 + HAL1 LINE L1 2075 2205 -302 9 859 225 65 0 0 chr1 36005603 36005634 -161189798 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 859 2532 137 40 21 chr1 36005805 36006231 -161189201 - MT2A LTR ERVL -92 441 8 1 859 992 208 34 1 chr1 36006239 36006440 -161188992 + ORR1D1-int LTR MaLR 220 428 -1152 1 859 333 0 0 0 chr1 36006443 36006480 -161188952 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 859 1004 47 0 0 chr1 36006480 36006607 -161188825 - B1_Mus1 SINE Alu 0 148 22 1 859 1639 226 19 108 chr1 36006614 36007076 -161188356 + ORR1D1-int LTR MaLR 395 815 -555 1 859 1357 79 0 11 chr1 36007078 36007258 -161188174 + B2_Mm2 SINE B2 2 179 -16 1 859 467 227 18 18 chr1 36007258 36007370 -161188062 + ORR1D1-int LTR MaLR 1259 1370 0 1 859 1450 177 177 16 chr1 36007370 36007692 -161187740 + ORR1D1 LTR MaLR 1 374 0 1 859 684 0 0 0 chr1 36008342 36008418 -161187014 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 859 405 0 0 0 chr1 36008418 36008463 -161186969 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 859 446 336 70 0 chr1 36008708 36008851 -161186581 - RSINE1 SINE B4 0 165 13 1 859 2733 40 0 0 chr1 36008930 36009255 -161186177 - L1_Mus1 LINE L1 -1 6566 6242 1 859 657 212 28 28 chr1 36009256 36009284 -161186148 - B4 SINE B4 -48 244 219 2 859 381 43 0 0 chr1 36009284 36009331 -161186101 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 2 859 657 212 28 28 chr1 36009331 36009443 -161185989 - B4 SINE B4 -74 218 104 2 859 474 203 273 0 chr1 36010911 36011036 -161184396 + B3 SINE B2 3 162 -54 2 859 1130 223 53 70 chr1 36011036 36011239 -161184193 + RMER17C LTR ERVK 1 184 -226 2 859 225 0 0 0 chr1 36011239 36011264 -161184168 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 859 348 24 0 0 chr1 36011264 36011304 -161184128 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 859 1130 223 53 70 chr1 36011304 36011513 -161183919 + RMER17C LTR ERVK 185 405 -5 2 859 1534 47 16 5 chr1 36011797 36011989 -161183443 + B2_Mm2 SINE B2 2 195 0 2 859 315 289 22 129 chr1 36013367 36013506 -161181926 - RMER5 LTR ERV1 -406 128 5 2 859 294 270 27 13 chr1 36013545 36013620 -161181812 - RMER5 LTR ERV1 0 534 459 2 859 21 0 0 0 chr1 36014878 36014899 -161180533 + AT_rich Low_complexity Low_complexity 1 21 0 2 859 795 230 7 0 chr1 36015106 36015258 -161180174 + ID_B1 SINE B4 67 219 -5 3 859 387 0 0 0 chr1 36015342 36015385 -161180047 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 859 196 53 26 26 chr1 36017156 36017195 -161178237 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 3 859 677 124 17 40 chr1 36017337 36017481 -161177951 - B1_Mur4 SINE Alu 0 150 9 3 859 403 316 37 31 chr1 36017902 36018065 -161177367 + B4A SINE B4 2 165 -127 3 859 1489 22 61 0 chr1 36018110 36018291 -161177141 + B2_Mm1a SINE B2 2 193 0 3 859 266 50 0 24 chr1 36018314 36018355 -161177077 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 859 21 0 0 0 chr1 36018427 36018448 -161176984 + AT_rich Low_complexity Low_complexity 1 21 0 3 859 608 231 81 7 chr1 36018484 36018632 -161176800 + RSINE1 SINE B4 5 163 -2 3 859 363 246 57 109 chr1 36018491 36018683 -161176749 + B2_Mm1t SINE B2 11 192 -1 3 859 392 216 59 67 chr1 36019060 36019179 -161176253 - PB1D9 SINE Alu -2 118 1 4 859 1029 242 85 93 chr1 36019584 36019948 -161175484 - MTE2a LTR MaLR 0 379 19 4 859 260 253 100 12 chr1 36020311 36020391 -161175041 + B4A SINE B4 5 91 -201 4 859 726 264 77 15 chr1 36020429 36020625 -161174807 - ID_B1 SINE B4 0 224 17 4 859 265 191 52 73 chr1 36020880 36020976 -161174456 - L1MA5 LINE L1 -124 6176 6083 4 859 465 225 78 96 chr1 36020998 36021165 -161174267 + RMER10A LTR ERVL 3 166 -276 4 859 864 230 225 67 chr1 36021685 36022345 -161173087 - RMER4B LTR ERVK -23 879 1 4 859 782 200 0 15 chr1 36022430 36022567 -161172865 + B1_Mur1 SINE Alu 1 135 -14 4 859 405 0 0 0 chr1 36022586 36022631 -161172801 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4 859 398 269 35 97 chr1 36022680 36022824 -161172608 - B3 SINE B2 0 216 82 4 859 1585 32 32 0 chr1 36022886 36023072 -161172360 + B2_Mm1a SINE B2 2 193 0 5 859 702 250 0 0 chr1 36023092 36023228 -161172204 + RSINE1 SINE B4 1 136 -29 5 859 252 0 0 0 chr1 36023232 36023260 -161172172 + (TATG)n Simple_repeat Simple_repeat 4 31 0 5 859 659 222 69 119 chr1 36023340 36023359 -161172073 - B4A SINE B4 -44 248 227 5 859 210 71 0 0 chr1 36023359 36023387 -161172045 + (TGG)n Simple_repeat Simple_repeat 2 29 0 5 859 657 183 22 22 chr1 36023387 36023521 -161171911 - B1_Mur1 SINE Alu -15 134 1 5 859 659 222 69 119 chr1 36023521 36023761 -161171671 - B4A SINE B4 -66 226 3 5 859 362 316 117 64 chr1 36023774 36024541 -161170891 + L1MD LINE L1 3776 4583 -1563 5 859 725 277 74 52 chr1 36024617 36024887 -161170545 - B4A SINE B4 -15 277 2 5 859 705 216 6 57 chr1 36024992 36025149 -161170283 + B1_Mur2 SINE Alu 1 149 0 5 859 300 265 0 0 chr1 36025220 36025318 -161170114 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 859 999 240 50 88 chr1 36025318 36025414 -161170018 - B4A SINE B4 0 292 212 6 859 4108 119 22 2 chr1 36025414 36026003 -161169429 - MT2B LTR ERVL 0 601 1 6 859 999 240 50 88 chr1 36026003 36026203 -161169229 - B4A SINE B4 -81 211 7 6 859 333 240 156 27 chr1 36026217 36026474 -161168958 + L1MD LINE L1 4851 5140 -1006 5 859 1032 258 49 42 chr1 36026474 36026761 -161168671 + B4 SINE B4 4 292 0 6 859 336 298 61 0 chr1 36026785 36026899 -161168533 + ORR1E LTR MaLR 4 124 -235 6 859 6277 135 36 103 chr1 36026932 36027992 -161167440 + RMER12 LTR ERVK 1 988 -334 6 859 201 94 0 0 chr1 36027992 36028024 -161167408 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 859 6277 135 36 103 chr1 36028024 36028209 -161167223 + RMER12 LTR ERVK 989 1163 -159 6 859 1436 224 71 28 chr1 36028388 36028742 -161166690 - ORR1D2 LTR MaLR 0 370 2 6 859 796 255 57 126 chr1 36029369 36029670 -161165762 + B4A SINE B4 5 284 -8 6 859 468 0 0 0 chr1 36029681 36029733 -161165699 + (CTA)n Simple_repeat Simple_repeat 3 54 0 6 859 691 153 137 0 chr1 36029929 36030060 -161165372 + B1_Mur1 SINE Alu 1 149 0 6 859 316 284 44 7 chr1 36030067 36030202 -161165230 + L1MD LINE L1 5264 5403 -743 5 859 229 188 14 28 chr1 36030742 36030813 -161164619 + T-rich Low_complexity Low_complexity 5 74 0 7 859 363 204 182 10 chr1 36030852 36030951 -161164481 - PB1D7 SINE Alu 0 120 5 7 859 1056 262 150 21 chr1 36031589 36031975 -161163457 + Lx8 LINE L1 6393 6828 -645 7 859 225 180 0 0 chr1 36031978 36032028 -161163404 + Lx8 LINE L1 7420 7469 -4 7 859 24 0 0 0 chr1 36032029 36032053 -161163379 + AT_rich Low_complexity Low_complexity 1 24 0 7 859 1299 101 6 6 chr1 36032066 36032245 -161163187 + B2_Mm1t SINE B2 1 179 -14 7 859 347 124 0 39 chr1 36032295 36032362 -161163070 + B2_Mm2 SINE B2 47 109 -107 7 859 393 75 0 0 chr1 36032374 36032427 -161163005 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 7 859 2033 262 104 23 chr1 36032475 36033136 -161162296 + Lx8 LINE L1 6705 7419 -54 7 859 431 213 7 26 chr1 36033136 36033290 -161162142 + GA-rich Low_complexity Low_complexity 1 151 0 7 859 465 296 113 26 chr1 36033364 36033558 -161161874 + RMER5 LTR ERV1 188 398 -136 7 859 667 220 19 32 chr1 36033559 36033714 -161161718 + B3A SINE B2 2 154 -44 8 859 1317 239 30 18 chr1 36034051 36034532 -161160900 + Lx9 LINE L1 7100 7621 -23 8 859 240 111 0 0 chr1 36034537 36034573 -161160859 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 859 2639 197 37 4 chr1 36034799 36035313 -161160119 - MT2A LTR ERVL 0 533 3 8 859 246 196 0 0 chr1 36035438 36035484 -161159948 + RMER5 LTR ERV1 478 523 -11 7 859 285 29 0 0 chr1 36036045 36036079 -161159353 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 859 468 213 41 5 chr1 36036218 36036326 -161159106 + B4 SINE B4 114 220 -72 8 859 186 128 0 0 chr1 36036334 36036373 -161159059 + (A)n Simple_repeat Simple_repeat 1 39 0 8 859 1264 41 0 0 chr1 36036459 36036605 -161158827 + B1_Mm SINE Alu 2 147 0 8 859 491 320 139 79 chr1 36036911 36037353 -161158079 + L1MEd LINE L1 373 837 -5282 8 859 1713 21 0 0 chr1 36037353 36037546 -161157886 + B2_Mm1a SINE B2 1 193 0 8 859 491 320 139 79 chr1 36037546 36037565 -161157867 + L1MEd LINE L1 838 863 -5256 8 859 1454 69 11 0 chr1 36037565 36037753 -161157679 + B2_Mm1t SINE B2 2 191 -2 9 859 491 320 139 79 chr1 36037753 36037772 -161157660 + L1MEd LINE L1 864 883 -5236 8 859 382 246 186 6 chr1 36037795 36037967 -161157465 - B3 SINE B2 -13 203 1 9 859 381 43 0 0 chr1 36038389 36038436 -161156996 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 859 2826 157 22 57 chr1 36038458 36039006 -161156426 - RLTR24 LTR ERV1 0 529 1 9 859 195 42 0 0 chr1 36039006 36039030 -161156402 + (GGAA)n Simple_repeat Simple_repeat 2 25 0 9 859 1954 257 59 21 chr1 36039303 36039863 -161155569 - RMER15-int LTR ERVL -3932 1067 487 9 859 1233 100 65 0 chr1 36040023 36040193 -161155239 + B2_Mm2 SINE B2 1 181 -14 9 859 1347 272 85 10 chr1 36040505 36040906 -161154526 - RMER15-int LTR ERVL -4533 466 36 9 859 713 235 24 112 chr1 36040934 36041183 -161154249 - RMER15 LTR ERVL -13 562 336 9 859 1284 283 14 20 chr1 36041539 36041896 -161153536 - MTEb LTR MaLR -1 378 24 9 859 1523 212 62 56 chr1 36041910 36042300 -161153132 + MTD LTR MaLR 14 405 -14 9 859 292 266 65 92 chr1 36043467 36043620 -161151812 + MER121 Unknown Unknown 164 312 -100 9 859 405 113 70 0 chr1 36043811 36043882 -161151550 - B1_Mur4 SINE Alu -66 84 9 1 859 764 279 40 32 chr1 36044022 36044270 -161151162 - B4 SINE B4 -41 251 2 1 859 728 234 19 81 chr1 36044359 36044568 -161150864 - B3A SINE B2 -1 197 2 1 859 500 89 13 0 chr1 36044569 36044648 -161150784 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 859 510 83 0 0 chr1 36044648 36044720 -161150712 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 859 267 31 0 0 chr1 36044720 36044751 -161150681 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 107 788 244 24 0 chr1 36044760 36044924 -161150508 - B3A SINE B2 -30 168 1 1 860 700 229 182 36 chr1 36045142 36045400 -161150032 + MTD LTR MaLR 1 344 -75 1 860 3262 30 5 57 chr1 36045400 36045624 -161149808 - MTA_Mm LTR MaLR 0 396 193 1 860 1474 27 31 46 chr1 36045624 36045819 -161149613 - B2_Mm1t SINE B2 0 193 2 1 860 3262 30 5 57 chr1 36045819 36046012 -161149420 - MTA_Mm LTR MaLR -204 192 1 1 860 700 215 176 24 chr1 36046012 36046086 -161149346 + MTD LTR MaLR 345 419 0 1 860 2167 246 81 79 chr1 36046086 36047171 -161148261 + MTD-int LTR MaLR 1 1098 0 1 860 1788 219 50 37 chr1 36047207 36047541 -161147891 + MTD LTR MaLR 12 363 -56 1 860 2058 118 9 64 chr1 36047541 36047886 -161147546 - ORR1A3 LTR MaLR 0 326 1 1 860 1788 219 50 37 chr1 36047886 36047954 -161147478 + MTD LTR MaLR 364 419 0 1 860 1247 34 0 13 chr1 36048018 36048167 -161147265 - B1_Mus2 SINE Alu 0 147 1 1 860 1387 66 0 16 chr1 36048167 36048351 -161147081 - B2_Mm2 SINE B2 -13 182 1 1 860 215 225 0 14 chr1 36048527 36048599 -161146833 + CT-rich Low_complexity Low_complexity 1 71 0 1 860 405 318 31 23 chr1 36048636 36048765 -161146667 + B4 SINE B4 2 131 -161 1 860 226 320 26 26 chr1 36048745 36048822 -161146610 - MLT1A LTR MaLR -230 144 68 1 860 1967 118 3 17 chr1 36048845 36049137 -161146295 + ORR1B2 LTR MaLR 80 367 0 1 860 1049 99 0 0 chr1 36050725 36050860 -161144572 + MTC LTR MaLR 3 137 -284 1 860 2108 152 38 53 chr1 36050860 36051257 -161144175 + ORR1B1 LTR MaLR 4 394 0 1 860 1715 141 30 4 chr1 36051270 36051534 -161143898 + MTC LTR MaLR 151 421 0 1 860 1549 256 48 5 chr1 36051976 36052360 -161143072 + MTD LTR MaLR 10 379 0 1 860 332 255 211 62 chr1 36053049 36053248 -161142184 + MLT1A1 LTR MaLR 60 274 -91 1 860 261 200 0 0 chr1 36053284 36053329 -161142103 - MER4B-int LTR ERV1 -5564 1194 1150 1 860 363 252 0 0 chr1 36053329 36053440 -161141992 + (CA)n Simple_repeat Simple_repeat 1 111 0 1 860 477 290 86 62 chr1 36054010 36054349 -161141083 - MLT1A1 LTR MaLR 0 408 12 1 860 230 283 0 62 chr1 36054829 36054852 -161140580 - RSINE1 SINE B4 0 165 144 1 860 201 39 0 0 chr1 36054852 36054878 -161140554 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1 860 230 283 0 62 chr1 36054878 36054918 -161140514 - RSINE1 SINE B4 -22 143 106 1 860 1105 62 21 0 chr1 36055932 36056076 -161139356 + B1_Mm SINE Alu 1 147 0 1 860 275 392 8 0 chr1 36056113 36056243 -161139189 + Lx8 LINE L1 7142 7272 -201 1 860 569 252 52 0 chr1 36056452 36056567 -161138865 + RSINE1 SINE B4 2 122 -43 1 860 354 123 0 0 chr1 36056593 36056650 -161138782 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 860 1705 230 62 5 chr1 36057632 36058004 -161137428 - MTD LTR MaLR -14 405 13 1 860 207 88 0 0 chr1 36058004 36058038 -161137394 + (A)n Simple_repeat Simple_repeat 1 34 0 1 860 2875 84 142 0 chr1 36058483 36058949 -161136483 - RLTR47_MM LTR ERV1 0 532 1 1 860 562 267 129 71 chr1 36059304 36059514 -161135918 + B4 SINE B4 1 222 -70 1 860 453 309 70 22 chr1 36059521 36059720 -161135712 + B4A SINE B4 4 204 -20 1 860 513 289 119 2 chr1 36061811 36061981 -161133451 + ID_B1 SINE B4 19 202 -22 1 860 2166 78 18 161 chr1 36062015 36062116 -161133316 - ORR1A2 LTR MaLR -1 326 286 1 860 1185 50 0 0 chr1 36062116 36062257 -161133175 - B1_Mus2 SINE Alu -5 142 2 1 860 2166 78 18 161 chr1 36062257 36062535 -161132897 - ORR1A2 LTR MaLR -42 285 1 1 860 2862 189 33 74 chr1 36062709 36063371 -161132061 - RMER1C Other Other 0 1342 708 1 860 352 303 0 0 chr1 36063499 36063588 -161131844 + MER117 DNA MER1_type 69 157 -40 1 860 569 279 37 25 chr1 36063855 36064017 -161131415 - RSINE1 SINE B4 0 165 2 1 860 375 305 79 113 chr1 36064192 36064367 -161131065 + B4 SINE B4 36 198 -94 1 860 273 286 47 94 chr1 36064367 36064512 -161130920 + RSINE1 SINE B4 4 141 -24 1 860 207 0 0 0 chr1 36064512 36064535 -161130897 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 1 860 273 286 47 94 chr1 36064535 36064559 -161130873 + RSINE1 SINE B4 142 165 0 1 860 375 305 79 113 chr1 36064559 36064649 -161130783 + B4 SINE B4 199 292 0 1 860 188 143 24 0 chr1 36064667 36064709 -161130723 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 860 1368 87 22 0 chr1 36064916 36065099 -161130333 - B2_Mm2 SINE B2 -7 188 2 1 860 183 139 0 0 chr1 36065194 36065209 -161130223 + (TTTTTG)n Simple_repeat Simple_repeat 4 18 0 1 860 264 91 0 0 chr1 36065209 36065253 -161130179 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 1 860 183 139 0 0 chr1 36065253 36065280 -161130152 + (TTTTTG)n Simple_repeat Simple_repeat 1 27 0 1 860 1170 82 0 0 chr1 36065280 36065427 -161130005 - B1_Mus1 SINE Alu 0 148 2 1 860 225 284 71 43 chr1 36065814 36065884 -161129548 - MLT1J1 LTR MaLR -279 165 94 1 860 577 200 17 17 chr1 36066620 36066798 -161128634 + CT-rich Low_complexity Low_complexity 2 179 0 1 860 240 111 0 0 chr1 36066798 36066834 -161128598 + (TTC)n Simple_repeat Simple_repeat 1 36 0 1 860 806 287 44 0 chr1 36067102 36067283 -161128149 + B3 SINE B2 27 215 -1 1 860 290 252 167 87 chr1 36067497 36067623 -161127809 + B1_Mur3 SINE Alu 2 137 -10 1 860 325 299 162 73 chr1 36067720 36068048 -161127384 + ORR1E LTR MaLR 1 357 -2 1 860 1166 123 21 38 chr1 36068271 36068457 -161126975 - URR1B DNA MER1_type 0 225 43 1 860 400 275 49 12 chr1 36068545 36068707 -161126725 + L1MA4 LINE L1 5763 5930 -370 1 860 1518 144 110 34 chr1 36068748 36069129 -161126303 - RMER17C LTR ERVK 0 410 1 1 860 512 274 166 45 chr1 36069709 36069999 -161125433 + RMER5 LTR ERV1 73 397 -137 1 860 180 0 0 0 chr1 36070019 36070039 -161125393 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 860 598 102 30 2 chr1 36070039 36070156 -161125276 - ORR1B1-int LTR MaLR -27 1482 1397 1 860 867 237 184 21 chr1 36070152 36070569 -161124863 + ORR1B1-int LTR MaLR 594 1040 -540 1 860 582 256 145 32 chr1 36070567 36070844 -161124588 - RMER20B LTR ERVK -103 413 124 1 860 2380 147 44 202 chr1 36070963 36071662 -161123770 + ORR1B1-int LTR MaLR 906 1509 0 1 860 253 209 26 130 chr1 36071662 36071739 -161123693 + ORR1B1 LTR MaLR 1 69 -298 1 860 452 108 23 62 chr1 36071708 36071811 -161123621 + ORR1B1 LTR MaLR 221 386 -8 1 860 1741 175 78 6 chr1 36071817 36072150 -161123282 + RLTR24 LTR ERV1 173 529 0 1 860 489 273 45 39 chr1 36072171 36072327 -161123105 + B4A SINE B4 95 251 -41 1 860 567 218 0 9 chr1 36072864 36072975 -161122457 + RMER5 LTR ERV1 386 495 -39 1 860 305 238 48 0 chr1 36073009 36073072 -161122360 - L1MEg LINE L1 -4137 1947 1882 1 860 1185 75 0 0 chr1 36073073 36073220 -161122212 - B1_Mm SINE Alu 0 147 1 1 860 222 150 0 0 chr1 36073268 36073308 -161122124 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 860 749 173 247 6 chr1 36074357 36074531 -161120901 + B3 SINE B2 1 216 0 1 860 2369 77 9 12 chr1 36075812 36076142 -161119290 - ORR1A4 LTR MaLR 0 329 1 1 860 453 277 27 47 chr1 36076578 36076633 -161118799 + RLTR14 LTR ERV1 224 278 -104 1 860 2702 113 15 15 chr1 36076633 36077037 -161118395 - MTB_Mm LTR MaLR -3 404 1 1 860 453 277 27 47 chr1 36077037 36077129 -161118303 + RLTR14 LTR ERV1 279 368 -14 1 860 1165 76 0 0 chr1 36077487 36077632 -161117800 + B1_Mm SINE Alu 3 147 0 1 860 2618 139 148 82 chr1 36077832 36078405 -161117027 + RMER19C LTR ERVK 1 611 0 1 860 2239 195 95 35 chr1 36078519 36078939 -161116493 + Lx9 LINE L1 6681 7117 -527 1 860 207 0 0 0 chr1 36078939 36078962 -161116470 + (GAA)n Simple_repeat Simple_repeat 1 23 0 1 860 2239 195 95 35 chr1 36078962 36079077 -161116355 + Lx9 LINE L1 7118 7248 -396 1 860 1196 48 0 26 chr1 36079099 36079250 -161116182 + B1_Mm SINE Alu 1 147 0 1 860 767 219 130 48 chr1 36079256 36079587 -161115845 + L1MA7 LINE L1 5205 5562 -285 1 860 1538 225 47 49 chr1 36079621 36080007 -161115425 + MTD LTR MaLR 3 391 -28 1 860 306 0 0 0 chr1 36080007 36080041 -161115391 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 860 1538 225 47 49 chr1 36080041 36080061 -161115371 + MTD LTR MaLR 392 408 -11 1 860 1341 212 24 14 chr1 36080070 36080403 -161115029 + L1MA7 LINE L1 5557 5963 -328 1 860 394 284 0 0 chr1 36080403 36080632 -161114800 + (CAGAGA)n Simple_repeat Simple_repeat 1 229 0 1 860 242 237 0 12 chr1 36080648 36080819 -161114613 + (CATATA)n Simple_repeat Simple_repeat 6 174 0 1 860 267 31 0 0 chr1 36081015 36081047 -161114385 + (CAG)n Simple_repeat Simple_repeat 2 33 0 1 860 183 156 0 0 chr1 36081368 36081400 -161114032 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 860 400 200 0 0 chr1 36081431 36081501 -161113931 + B4A SINE B4 3 72 -220 1 860 268 189 38 0 chr1 36081508 36081561 -161113871 + B3A SINE B2 1 55 -143 1 860 366 211 53 80 chr1 36082183 36082296 -161113136 - PB1D10 SINE Alu -7 110 1 1 860 991 237 96 112 chr1 36082476 36082842 -161112590 + MTE2a LTR MaLR 20 379 0 1 860 495 266 118 45 chr1 36082862 36083115 -161112317 + MLT1F1 LTR MaLR 355 680 0 1 860 341 75 19 0 chr1 36083160 36083213 -161112219 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 860 998 206 5 36 chr1 36083224 36083420 -161112012 - B4 SINE B4 -9 283 94 1 860 238 353 56 56 chr1 36083422 36083584 -161111848 - MLT1F LTR MaLR -295 253 92 1 860 530 276 25 76 chr1 36083590 36083747 -161111685 + B4A SINE B4 3 151 -141 1 860 283 309 5 5 chr1 36083834 36084039 -161111393 + (CA)n Simple_repeat Simple_repeat 1 204 0 1 860 446 291 82 31 chr1 36084145 36084503 -161110929 - L1M5 LINE L1 -730 5443 5066 1 860 252 271 68 0 chr1 36084538 36084597 -161110835 - ID_B1 SINE B4 0 224 162 1 860 3682 108 23 171 chr1 36084602 36085383 -161110049 - RLTR33 LTR ERVK 0 678 15 1 860 3110 27 11 0 chr1 36085383 36085752 -161109680 - L1Md_F2 LINE L1 -1 6581 6209 1 860 3682 108 23 171 chr1 36085752 36085766 -161109666 - RLTR33 LTR ERVK -664 14 1 1 860 657 69 0 0 chr1 36085771 36085858 -161109574 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 860 698 47 0 0 chr1 36085861 36085946 -161109486 - B1_Mm SINE Alu -3 144 60 2 860 1050 224 45 48 chr1 36086148 36086439 -161108993 + B4A SINE B4 1 290 -2 2 860 262 303 39 13 chr1 36086526 36086603 -161108829 - B4 SINE B4 -178 114 36 1 860 629 126 65 29 chr1 36086541 36086694 -161108738 + ORR1B1 LTR MaLR 175 394 0 2 860 197 275 58 99 chr1 36087836 36087957 -161107475 + MIRb SINE MIR 36 151 -117 2 860 4503 18 0 0 chr1 36088321 36088814 -161106618 + MT2_Mm LTR ERVL 1 493 0 2 860 48587 15 6 0 chr1 36088814 36094151 -161101281 + MERVL-int LTR ERVL 1 5371 -114 2 860 412 123 13 40 chr1 36094151 36094227 -161101205 + ORR1A3-int LTR MaLR 567 640 -1323 2 860 319 0 0 0 chr1 36094227 36094265 -161101167 + MERVL-int LTR ERVL 5448 5485 0 2 860 4486 20 0 0 chr1 36094265 36094758 -161100674 + MT2_Mm LTR ERVL 1 493 0 2 860 25 0 0 0 chr1 36096051 36096076 -161099356 + AT_rich Low_complexity Low_complexity 1 25 0 2 860 1265 263 80 12 chr1 36096677 36097016 -161098416 + MTEa LTR MaLR 18 379 0 2 860 1174 111 54 27 chr1 36097175 36097259 -161098173 + B2_Mm1a SINE B2 1 89 -104 2 860 3841 33 51 81 chr1 36097259 36097787 -161097645 + RLTR1B LTR ERV1 1 512 0 2 860 1174 111 54 27 chr1 36097787 36097887 -161097545 + B2_Mm1a SINE B2 90 190 -3 2 860 236 143 53 18 chr1 36098017 36098074 -161097358 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 860 710 240 27 0 chr1 36098436 36098586 -161096846 + RSINE1 SINE B4 4 157 -8 2 860 36 23 0 0 chr1 36098609 36098652 -161096780 + AT_rich Low_complexity Low_complexity 1 43 0 2 860 243 173 0 0 chr1 36098923 36098975 -161096457 + A-rich Low_complexity Low_complexity 1 52 0 2 860 253 299 67 61 chr1 36099245 36099409 -161096023 + L1MEd LINE L1 640 804 -5315 2 860 442 254 162 13 chr1 36099427 36099610 -161095822 + B4A SINE B4 3 228 -64 2 860 205 191 0 0 chr1 36100026 36100068 -161095364 + A-rich Low_complexity Low_complexity 1 42 0 2 860 272 288 94 0 chr1 36100267 36100427 -161095005 + L1_Rod LINE L1 746 920 -6252 2 860 4385 61 9 18 chr1 36100594 36101163 -161094269 - LTRIS2 LTR ERV1 0 564 1 2 860 1065 149 32 0 chr1 36101236 36101424 -161094008 + B2_Mm2 SINE B2 2 195 0 2 860 3714 272 70 37 chr1 36101427 36101810 -161093622 + Lx8 LINE L1 1488 1901 -3979 2 860 1109 94 0 0 chr1 36101810 36101948 -161093484 + B1_Mus1 SINE Alu 1 138 -10 2 860 188 0 74 0 chr1 36101948 36101975 -161093457 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 860 315 0 0 0 chr1 36101975 36102010 -161093422 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 860 3714 272 70 37 chr1 36102010 36103342 -161092090 + Lx8 LINE L1 1902 3260 -2620 2 860 4788 262 50 16 chr1 36103358 36104446 -161090986 + Lx8 LINE L1 4221 5337 -543 2 860 3866 28 5 0 chr1 36104446 36104880 -161090552 - RLTR10C LTR ERVK 0 436 1 2 860 4788 265 50 15 chr1 36104880 36105511 -161089921 + Lx8 LINE L1 5338 6002 -1642 2 860 2755 277 50 20 chr1 36105640 36106446 -161088986 + Lx8 LINE L1 6366 7195 -278 2 860 2175 77 48 19 chr1 36106446 36106762 -161088670 + IAPLTR2b LTR ERVK 1 325 -2 2 860 278 293 0 24 chr1 36106766 36106850 -161088582 + Lx8 LINE L1 7192 7273 -200 2 860 258 302 101 65 chr1 36107085 36107223 -161088209 - MT2B2 LTR ERVL -275 309 167 2 860 501 228 8 7 chr1 36107120 36107224 -161088208 - B1_Mur3 SINE Alu -11 106 2 2 860 248 373 70 23 chr1 36107286 36107415 -161088017 + RLTR16 LTR ERVK 164 298 -207 2 860 216 0 0 0 chr1 36107928 36107952 -161087480 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 860 1654 36 0 20 chr1 36108528 36108725 -161086707 + B2_Mm1t SINE B2 1 193 0 2 860 311 0 0 25 chr1 36108996 36109036 -161086396 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 860 1198 50 0 0 chr1 36109038 36109179 -161086253 - B1_Mus1 SINE Alu -6 142 2 2 860 1089 49 0 7 chr1 36109218 36109361 -161086071 - L1Md_F2 LINE L1 -12 6570 6429 2 860 316 238 81 23 chr1 36109374 36109460 -161085972 + B4A SINE B4 198 288 -4 2 860 403 335 40 63 chr1 36109523 36109775 -161085657 - ORR1E LTR MaLR -110 249 4 2 860 308 243 14 0 chr1 36109775 36109845 -161085587 + B4A SINE B4 2 72 -220 2 860 893 151 209 5 chr1 36109954 36110141 -161085291 + URR1A DNA MER1_type 2 226 0 2 860 351 105 0 0 chr1 36110292 36110349 -161085083 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 860 674 192 139 0 chr1 36110628 36110779 -161084653 - MTD LTR MaLR -1 418 247 2 860 243 231 108 0 chr1 36110761 36110826 -161084606 - PB1D10 SINE Alu -11 106 35 2 860 315 324 65 24 chr1 36111082 36111373 -161084059 - L1MCc LINE L1 -4887 1536 1234 2 860 375 125 0 0 chr1 36111374 36111446 -161083986 + (T)n Simple_repeat Simple_repeat 1 72 0 2 860 579 226 67 15 chr1 36111594 36111729 -161083703 + B1_Mur1 SINE Alu 8 149 0 2 860 369 351 82 45 chr1 36111895 36112163 -161083269 + B4 SINE B4 5 282 -10 2 860 252 273 0 35 chr1 36112136 36112193 -161083239 + RSINE1 SINE B4 111 165 0 2 860 243 88 0 0 chr1 36112594 36112628 -161082804 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 860 628 291 33 38 chr1 36112629 36112675 -161082757 - ID_B1 SINE B4 -13 211 172 2 860 270 0 0 0 chr1 36112675 36112705 -161082727 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 860 628 291 33 38 chr1 36112705 36112869 -161082563 - ID_B1 SINE B4 -53 171 2 2 860 25 0 0 0 chr1 36112991 36113016 -161082416 + AT_rich Low_complexity Low_complexity 1 25 0 2 860 428 245 29 29 chr1 36113170 36113275 -161082157 - RSINE1 SINE B4 -13 152 48 2 860 294 123 0 0 chr1 36113300 36113357 -161082075 + (G)n Simple_repeat Simple_repeat 1 57 0 2 860 288 0 0 0 chr1 36113432 36113464 -161081968 + (T)n Simple_repeat Simple_repeat 1 32 0 2 860 348 257 159 0 chr1 36113794 36113907 -161081525 + B4 SINE B4 10 140 -152 2 860 563 270 73 17 chr1 36113972 36114149 -161081283 + B3A SINE B2 7 193 -5 2 860 243 0 0 0 chr1 36114207 36114234 -161081198 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 860 324 236 26 77 chr1 36114289 36114367 -161081065 + ID4_ SINE ID 2 75 -8 2 860 1125 199 33 28 chr1 36114401 36114613 -161080819 + B3 SINE B2 1 213 -3 2 860 308 240 30 0 chr1 36114613 36114713 -161080719 - L1MD2 LINE L1 -421 5938 5836 2 860 290 45 23 0 chr1 36114715 36114759 -161080673 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 2 860 658 171 0 0 chr1 36114763 36114868 -161080564 - B1_Mm SINE Alu -9 138 34 2 860 250 191 0 113 chr1 36114812 36114883 -161080549 - 4.5SRNA scRNA scRNA -8 86 24 2 860 270 246 77 23 chr1 36114893 36114991 -161080441 - L1MD2 LINE L1 -339 5835 5729 2 860 2273 246 169 58 chr1 36115187 36115981 -161079451 - Lx7 LINE L1 -1 7695 6814 2 860 274 341 8 24 chr1 36115990 36116116 -161079316 - L1_Mur3 LINE L1 -6897 815 692 2 860 406 302 117 81 chr1 36116234 36116528 -161078904 - B4 SINE B4 -19 273 7 2 860 1053 271 24 75 chr1 36116536 36116987 -161078445 - L1MDb LINE L1 -5248 1161 734 2 860 551 189 54 0 chr1 36118748 36118859 -161076573 + MTD LTR MaLR 303 419 0 2 860 545 343 73 26 chr1 36119651 36119923 -161075509 + B4 SINE B4 4 288 -4 2 860 519 17 0 0 chr1 36120568 36120628 -161074804 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 860 587 298 85 22 chr1 36120673 36120944 -161074488 + B4A SINE B4 1 288 -4 2 860 227 305 24 0 chr1 36120948 36121030 -161074402 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 860 306 0 0 0 chr1 36123394 36123428 -161072004 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 860 369 0 0 0 chr1 36123428 36123468 -161071964 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 860 963 244 23 46 chr1 36123474 36123736 -161071696 - B4 SINE B4 -22 270 15 2 860 243 214 27 54 chr1 36123673 36123747 -161071685 - B3A SINE B2 -121 77 6 2 860 1092 72 0 7 chr1 36123858 36123998 -161071434 - B1_Mus1 SINE Alu -9 139 1 2 860 216 0 0 0 chr1 36124520 36124544 -161070888 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 860 224 241 0 87 chr1 36125104 36125231 -161070201 + (CGGGG)n Simple_repeat Simple_repeat 4 119 0 2 860 24 77 0 0 chr1 36125249 36125301 -161070131 + GC_rich Low_complexity Low_complexity 1 52 0 2 860 192 77 0 0 chr1 36125417 36125443 -161069989 + (CGG)n Simple_repeat Simple_repeat 2 27 0 2 860 23 54 0 0 chr1 36125450 36125487 -161069945 + GC_rich Low_complexity Low_complexity 1 37 0 2 860 22 0 0 0 chr1 36125504 36125526 -161069906 + GC_rich Low_complexity Low_complexity 1 22 0 2 860 760 225 125 5 chr1 36129168 36129360 -161066072 + ID_B1 SINE B4 2 216 -8 2 860 192 245 0 0 chr1 36129476 36129529 -161065903 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 860 448 282 48 60 chr1 36129535 36129701 -161065731 - RSINE1 SINE B4 0 165 2 2 860 376 290 150 61 chr1 36130002 36130296 -161065136 + MLT1A1 LTR MaLR 71 390 -18 2 860 183 80 0 0 chr1 36130947 36130972 -161064460 + (T)n Simple_repeat Simple_repeat 1 25 0 2 860 1253 48 0 0 chr1 36130972 36131118 -161064314 - B1_Mus2 SINE Alu 0 147 2 2 860 447 298 8 24 chr1 36133465 36133592 -161061840 - ID_B1 SINE B4 -98 126 2 2 860 301 264 163 44 chr1 36135609 36135744 -161059688 - MIR SINE MIR -106 156 6 2 860 688 241 9 116 chr1 36136076 36136292 -161059140 - B3A SINE B2 -5 193 1 2 860 560 227 42 0 chr1 36136321 36136440 -161058992 - RSINE1 SINE B4 -32 133 10 2 860 660 299 149 47 chr1 36137014 36137376 -161058056 - MT2A LTR ERVL -134 399 1 2 860 734 323 129 20 chr1 36138398 36138755 -161056677 - MLT2B2 LTR ERVL -13 502 107 2 860 396 0 0 0 chr1 36140719 36140763 -161054669 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 860 425 314 107 56 chr1 36141027 36141243 -161054189 - L1MB3 LINE L1 -78 6111 5885 2 860 712 318 19 27 chr1 36141349 36141608 -161053824 - B4A SINE B4 -35 257 1 2 860 279 338 68 20 chr1 36141610 36141758 -161053674 - L1MB3 LINE L1 -343 5828 5674 2 860 1141 75 7 13 chr1 36141758 36141907 -161053525 + B1_Mus1 SINE Alu 1 148 0 2 860 315 122 0 0 chr1 36141909 36141958 -161053474 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 2 860 272 243 41 22 chr1 36142138 36142293 -161053139 - FAM SINE Alu -81 230 12 3 860 369 0 0 0 chr1 36142297 36142338 -161053094 + (TTGG)n Simple_repeat Simple_repeat 1 41 0 3 860 230 315 0 14 chr1 36142401 36142475 -161052957 - B4A SINE B4 -2 290 218 3 860 725 217 28 7 chr1 36142502 36142646 -161052786 - B1_Mur1 SINE Alu -1 148 2 3 860 785 245 44 22 chr1 36142648 36142873 -161052559 - B4A SINE B4 -60 232 3 3 860 943 198 75 37 chr1 36142874 36143236 -161052196 - L1MB3 LINE L1 -729 5442 5041 2 860 1619 132 198 3 chr1 36143404 36143723 -161051709 - ORR1B1 LTR MaLR -5 389 9 3 860 290 253 91 11 chr1 36143870 36143958 -161051474 - L1MB3 LINE L1 -1353 4793 4699 2 860 661 286 179 9 chr1 36144159 36144494 -161050938 - L1MB3 LINE L1 -1684 4456 4065 2 860 770 91 8 0 chr1 36144834 36144955 -161050477 + (TG)n Simple_repeat Simple_repeat 2 123 0 3 860 283 269 38 13 chr1 36145724 36145803 -161049629 + RSINE1 SINE B4 85 165 0 3 860 480 272 0 0 chr1 36147444 36147547 -161047885 + RSINE1 SINE B4 3 105 -60 3 860 1247 243 35 95 chr1 36148210 36148610 -161046822 + MTEb LTR MaLR 1 376 -3 3 860 726 269 115 60 chr1 36148809 36148886 -161046546 + B4A SINE B4 9 76 -216 3 860 3371 52 8 0 chr1 36148886 36149288 -161046144 - MTB_Mm LTR MaLR -2 405 1 3 860 726 269 115 60 chr1 36149288 36149479 -161045953 + B4A SINE B4 77 292 0 3 860 216 167 0 0 chr1 36149746 36149782 -161045650 - B1_Mus1 SINE Alu -103 45 10 3 860 1335 192 0 139 chr1 36149860 36150081 -161045351 - B4 SINE B4 0 292 104 3 860 813 291 76 14 chr1 36150081 36150356 -161045076 - B4A SINE B4 0 292 1 3 860 1335 192 0 139 chr1 36150356 36150472 -161044960 - B4 SINE B4 -189 103 2 3 860 186 241 82 71 chr1 36150702 36150787 -161044645 - MIRc SINE MIR -116 152 67 3 860 360 0 0 0 chr1 36151564 36151604 -161043828 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 860 252 242 0 61 chr1 36153374 36153440 -161041992 - B4 SINE B4 -118 174 113 3 860 1059 94 0 0 chr1 36154172 36154404 -161041028 + (TGG)n Simple_repeat Simple_repeat 1 232 0 3 860 373 268 76 6 chr1 36154414 36154572 -161040860 - HAL1-2a_MD LINE L1 -519 2505 2337 3 860 421 336 86 21 chr1 36154817 36155051 -161040381 - MLT1J LTR MaLR -63 449 201 3 860 394 286 0 26 chr1 36155791 36155906 -161039526 + PB1D10 SINE Alu 3 114 -3 3 860 219 321 12 23 chr1 36156127 36156138 -161039294 - B2_Mm1t SINE B2 -108 85 1 3 860 360 243 0 13 chr1 36156138 36156213 -161039219 - RSINE1 SINE B4 -90 75 2 3 860 583 182 38 127 chr1 36156364 36156521 -161038911 + B1_Mur1 SINE Alu 1 143 -6 3 860 710 298 79 38 chr1 36156705 36156970 -161038462 - B4A SINE B4 -15 277 2 3 860 423 0 0 0 chr1 36158090 36158137 -161037295 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 860 474 243 33 93 chr1 36158204 36158354 -161037078 - B3A SINE B2 -57 141 1 3 860 595 262 37 12 chr1 36158369 36158531 -161036901 - B3A SINE B2 -6 192 27 3 860 498 71 0 0 chr1 36158903 36158973 -161036459 - ORR1A2 LTR MaLR 0 326 257 3 860 966 103 0 7 chr1 36158970 36159116 -161036316 - B2_Mm2 SINE B2 -5 190 46 3 860 1922 86 0 0 chr1 36159121 36159390 -161036042 - ORR1A2 LTR MaLR -58 269 1 3 860 262 197 216 7 chr1 36163603 36163746 -161031686 + ID_B1 SINE B4 2 219 -5 3 860 1306 88 61 0 chr1 36163778 36163959 -161031473 + B2_Mm2 SINE B2 1 192 -3 3 860 1376 69 0 74 chr1 36163963 36164129 -161031303 + B2_Mm1t SINE B2 1 160 -33 3 860 216 0 0 0 chr1 36164129 36164153 -161031279 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 3 860 1376 69 0 74 chr1 36164153 36164189 -161031243 + B2_Mm1t SINE B2 161 188 -5 3 860 351 274 13 10 chr1 36164479 36164581 -161030851 + PB1D10 SINE Alu 13 114 -3 3 860 788 259 131 46 chr1 36164588 36164847 -161030585 + B4 SINE B4 5 285 -7 3 860 728 136 8 0 chr1 36164856 36164981 -161030451 + (GGA)n Simple_repeat Simple_repeat 1 126 0 3 860 1010 80 0 0 chr1 36165596 36165721 -161029711 + B1_Mus1 SINE Alu 5 129 -19 3 860 534 268 157 0 chr1 36166026 36166224 -161029208 + B4A SINE B4 3 231 -61 3 860 318 238 49 12 chr1 36166226 36166307 -161029125 + RSINE1 SINE B4 47 130 -35 3 860 479 247 58 32 chr1 36167838 36167993 -161027439 + RLTR14 LTR ERV1 224 382 0 3 860 969 78 0 73 chr1 36168097 36168248 -161027184 - ORR1A2 LTR MaLR -8 319 180 3 860 5149 84 41 15 chr1 36168237 36169239 -161026193 + MTB-int LTR MaLR 329 1536 -427 3 860 2884 61 61 0 chr1 36169239 36169616 -161025816 + MTB LTR MaLR 1 400 0 3 860 751 285 57 48 chr1 36169629 36169905 -161025527 + RLTR14-int LTR ERV1 112 386 -4931 3 860 514 0 30 0 chr1 36169905 36169971 -161025461 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 860 751 285 57 48 chr1 36169971 36170029 -161025403 + RLTR14-int LTR ERV1 387 448 -4869 3 860 381 228 33 58 chr1 36170275 36170396 -161025036 + RLTR14-int LTR ERV1 447 564 -4753 3 860 561 88 0 0 chr1 36170448 36170528 -161024904 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 860 285 294 73 82 chr1 36170629 36170848 -161024584 + RLTR14-int LTR ERV1 699 915 -4402 3 860 287 278 53 45 chr1 36171263 36171395 -161024037 + RLTR14-int LTR ERV1 2274 2406 -2911 3 860 503 313 96 8 chr1 36171562 36171875 -161023557 + MURVY-int LTR ERV1 4018 4432 -3169 3 860 424 350 81 55 chr1 36172318 36172860 -161022572 + RLTR14-int LTR ERV1 3303 3858 -1459 3 860 395 273 56 79 chr1 36173132 36173474 -161021958 + RMER17C LTR ERVK 28 361 -49 3 860 674 287 138 27 chr1 36173915 36174291 -161021141 + RLTR14-int LTR ERV1 4895 5312 -5 3 860 259 229 270 24 chr1 36174489 36174615 -161020817 + RLTR14 LTR ERV1 226 382 0 3 860 237 33 0 0 chr1 36174797 36174827 -161020605 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 860 3061 166 95 7 chr1 36174845 36175453 -161019979 - RMER1B Other Other 0 1066 405 3 860 650 204 175 5 chr1 36175710 36175824 -161019608 - Lx9 LINE L1 -15 7629 7480 3 860 180 111 0 0 chr1 36175824 36175851 -161019581 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 107 650 204 175 5 chr1 36175851 36175953 -161019479 - Lx9 LINE L1 -165 7479 7377 3 861 2486 209 52 59 chr1 36175997 36176628 -161018804 - RMER20B LTR ERVK 0 627 1 3 861 2767 189 52 9 chr1 36176633 36177205 -161018227 - Lx9 LINE L1 -267 7377 6781 3 861 619 292 119 76 chr1 36177205 36177547 -161017885 + MTD LTR MaLR 6 370 -49 3 861 1543 141 203 14 chr1 36177547 36177892 -161017540 + RMER17C LTR ERVK 1 410 0 3 861 619 298 79 81 chr1 36177892 36177936 -161017496 + MTD LTR MaLR 359 392 -15 3 861 1696 137 190 40 chr1 36178275 36178649 -161016783 + RLTR23 LTR ERV1 1 430 0 3 861 213 219 0 0 chr1 36178754 36178795 -161016637 + PB1D7 SINE Alu 68 108 -12 3 861 249 259 74 0 chr1 36179028 36179082 -161016350 - RSINE1 SINE B4 0 165 108 3 861 605 280 155 78 chr1 36179114 36179552 -161015880 + RMER13A LTR ERVK 22 493 -367 3 861 423 0 0 0 chr1 36179712 36179759 -161015673 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 861 583 276 27 7 chr1 36179863 36180009 -161015423 - B4A SINE B4 -87 205 57 3 861 237 266 0 15 chr1 36180102 36180167 -161015265 - Lx5 LINE L1 -1311 5739 5676 3 861 330 243 222 9 chr1 36180408 36180516 -161014916 - B4 SINE B4 -14 278 148 3 861 21 0 0 0 chr1 36180897 36180918 -161014514 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 797 215 57 14 chr1 36180947 36181152 -161014280 - ORR1D1 LTR MaLR -7 367 158 3 861 353 180 98 20 chr1 36181156 36181309 -161014123 + (CAGG)n Simple_repeat Simple_repeat 4 168 0 3 861 223 0 82 82 chr1 36181324 36181397 -161014035 + (CAGG)n Simple_repeat Simple_repeat 4 76 0 3 861 1354 174 15 11 chr1 36181397 36181658 -161013774 - ORR1D1 LTR MaLR -112 262 1 3 861 238 327 101 18 chr1 36181658 36181767 -161013665 - B3 SINE B2 -18 198 81 3 861 461 214 70 18 chr1 36182240 36182354 -161013078 - B3 SINE B2 -95 121 2 3 861 242 280 74 21 chr1 36182397 36182492 -161012940 - B4A SINE B4 -144 148 49 3 861 300 260 191 9 chr1 36182500 36182605 -161012827 - L1MC LINE L1 -890 5256 5133 3 861 408 356 87 5 chr1 36182658 36182864 -161012568 + MLT1J LTR MaLR 191 413 -99 3 861 306 0 0 0 chr1 36182906 36182940 -161012492 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 861 813 196 6 51 chr1 36182945 36183101 -161012331 + B1_Mur3 SINE Alu 1 149 0 3 861 3123 61 5 8 chr1 36183236 36183633 -161011799 + MTA_Mm LTR MaLR 1 396 0 3 861 761 269 57 0 chr1 36183736 36183911 -161011521 - ID_B1 SINE B4 -2 222 38 3 861 767 255 47 33 chr1 36184241 36184456 -161010976 + B4 SINE B4 1 218 -74 3 861 626 302 0 6 chr1 36184456 36184616 -161010816 + RSINE1 SINE B4 7 165 0 3 861 763 260 207 26 chr1 36184791 36185095 -161010337 - ORR1E LTR MaLR 0 359 1 3 861 976 210 33 5 chr1 36185165 36185380 -161010052 - ID_B1 SINE B4 -1 223 3 3 861 240 35 0 0 chr1 36185546 36185575 -161009857 + (TCC)n Simple_repeat Simple_repeat 3 31 0 3 861 1110 88 14 0 chr1 36186444 36186591 -161008841 - B1_Mur4 SINE Alu 0 150 2 3 861 288 0 0 0 chr1 36186613 36186645 -161008787 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 861 1087 76 14 14 chr1 36186645 36186781 -161008651 - B1_Mus2 SINE Alu -9 138 1 3 861 1244 228 87 0 chr1 36186840 36187094 -161008338 - MTEa LTR MaLR -2 377 102 3 861 285 399 0 0 chr1 36187588 36187736 -161007696 + (TG)n Simple_repeat Simple_repeat 2 149 0 3 861 249 108 0 0 chr1 36189454 36189491 -161005941 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 861 524 296 40 53 chr1 36189501 36189651 -161005781 + RSINE1 SINE B4 9 156 -9 3 861 1078 213 19 0 chr1 36189697 36189904 -161005528 - B3 SINE B2 -4 212 2 3 861 231 324 56 35 chr1 36189993 36190137 -161005295 + RSINE1 SINE B4 18 164 -1 3 861 385 143 82 62 chr1 36190253 36190282 -161005150 + RMER15 LTR ERVL 477 509 -66 3 861 255 61 0 0 chr1 36190282 36190315 -161005117 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 861 385 143 82 62 chr1 36190315 36190382 -161005050 + RMER15 LTR ERVL 510 575 0 3 861 334 287 110 9 chr1 36190382 36190490 -161004942 + RSINE1 SINE B4 46 164 -1 3 861 687 265 91 94 chr1 36190703 36191077 -161004355 - MTE2a LTR MaLR -1 378 6 3 861 323 283 21 172 chr1 36191109 36191301 -161004131 - RSINE1 SINE B4 0 165 3 3 861 330 222 9 108 chr1 36191350 36191461 -161003971 - L1M4 LINE L1 -2629 3517 3418 3 861 576 252 26 33 chr1 36191519 36191671 -161003761 + B3A SINE B2 1 151 -47 3 861 888 118 0 0 chr1 36191752 36191888 -161003544 + (TC)n Simple_repeat Simple_repeat 1 136 0 3 861 336 243 123 14 chr1 36192113 36192251 -161003181 - L1M4 LINE L1 -3108 3038 2886 3 861 372 250 160 8 chr1 36192780 36192905 -161002527 + MTEa LTR MaLR 226 369 -10 3 861 210 74 0 0 chr1 36192995 36193022 -161002410 + B2_Mm2 SINE B2 47 73 -122 3 861 283 220 102 13 chr1 36193077 36193211 -161002221 + ID_B1 SINE B4 5 193 -31 3 861 341 301 125 26 chr1 36193280 36193561 -161001871 - MER74A LTR ERVL -170 388 4 3 861 212 289 0 0 chr1 36193579 36193617 -161001815 + RSINE1 SINE B4 37 74 -91 4 861 297 226 585 16 chr1 36193692 36193879 -161001553 + RCHARR1 DNA MER1_type 188 481 -493 4 861 426 244 181 15 chr1 36193897 36194056 -161001376 + B3A SINE B2 38 214 -2 4 861 415 315 83 61 chr1 36194107 36194337 -161001095 + B4A SINE B4 1 235 -57 4 861 441 0 0 0 chr1 36194375 36194424 -161001008 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 861 387 0 0 0 chr1 36194424 36194466 -161000966 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 861 345 171 65 13 chr1 36194474 36194551 -161000881 + RCHARR1 DNA MER1_type 551 631 -343 4 861 360 236 106 11 chr1 36194572 36194666 -161000766 + RCHARR1 DNA MER1_type 704 806 -168 4 861 1426 231 58 35 chr1 36194682 36195073 -161000359 + ORR1D2-int LTR MaLR 911 1370 0 4 861 975 265 130 7 chr1 36195073 36195373 -161000059 + ORR1D2 LTR MaLR 1 337 -33 4 861 548 53 0 26 chr1 36195383 36195461 -160999971 - B1_Mur4 SINE Alu 0 150 75 4 861 278 208 0 0 chr1 36195451 36195504 -160999928 + ORR1D2 LTR MaLR 318 370 0 4 861 594 199 94 58 chr1 36195504 36195619 -160999813 + RCHARR1 DNA MER1_type 805 928 -46 4 861 1352 96 16 5 chr1 36195619 36195808 -160999624 + B2_Mm2 SINE B2 1 191 -4 4 861 594 199 94 58 chr1 36195808 36195856 -160999576 + RCHARR1 DNA MER1_type 929 974 0 4 861 468 0 0 0 chr1 36196207 36196259 -160999173 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 861 291 28 0 0 chr1 36196755 36196791 -160998641 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 861 567 0 0 0 chr1 36196791 36196853 -160998579 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 861 190 81 54 0 chr1 36197954 36197991 -160997441 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 4 861 253 232 0 188 chr1 36199710 36199811 -160995621 - ID2 SINE ID 0 83 2 4 861 249 312 92 28 chr1 36201561 36201703 -160993729 - RSINE1 SINE B4 -12 153 3 4 861 337 250 17 92 chr1 36201843 36201962 -160993470 - L1M LINE L1 -701 5423 5314 4 861 643 190 32 24 chr1 36202000 36202124 -160993308 - B3 SINE B2 0 216 92 4 861 414 0 0 0 chr1 36202625 36202671 -160992761 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 861 288 228 47 81 chr1 36203109 36203195 -160992237 + PB1D10 SINE Alu 34 116 -1 4 861 768 224 51 45 chr1 36203677 36203855 -160991577 + B3A SINE B2 4 182 -16 4 861 545 273 43 0 chr1 36203922 36204061 -160991371 + B3 SINE B2 10 154 -62 4 861 285 109 0 0 chr1 36204062 36204108 -160991324 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 861 249 215 186 41 chr1 36204193 36204290 -160991142 - PB1D10 SINE Alu 0 117 7 4 861 338 252 45 45 chr1 36204517 36204629 -160990803 + PB1D7 SINE Alu 1 112 -8 4 861 1159 191 127 141 chr1 36204680 36205057 -160990375 + ORR1D1 LTR MaLR 3 374 0 4 861 1105 159 139 38 chr1 36205178 36205466 -160989966 + Lx7 LINE L1 7380 7696 0 4 861 719 182 66 0 chr1 36206182 36206319 -160989113 + B1_Mur1 SINE Alu 1 146 -3 4 861 589 204 37 22 chr1 36206402 36206537 -160988895 + B3 SINE B2 80 216 0 4 861 270 106 0 0 chr1 36206740 36206787 -160988645 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 861 1393 75 48 0 chr1 36207264 36207450 -160987982 + B2_Mm2 SINE B2 1 195 0 4 861 640 207 17 13 chr1 36207664 36207834 -160987598 + B3 SINE B2 1 209 -7 4 861 694 226 99 30 chr1 36207868 36208069 -160987363 - B3 SINE B2 0 216 2 4 861 697 149 30 0 chr1 36208175 36208302 -160987130 - PB1D9 SINE Alu 0 150 11 4 861 243 260 87 93 chr1 36208708 36208869 -160986563 - ORR1C1 LTR MaLR -190 188 29 4 861 275 287 89 141 chr1 36208830 36209021 -160986411 + MTE-int LTR MaLR 311 491 -1089 4 861 340 296 41 43 chr1 36210664 36211045 -160984387 + L1_Mur3 LINE L1 1218 1596 -4251 4 861 1868 232 143 21 chr1 36211084 36211743 -160983689 + Lx8 LINE L1 6594 7332 -141 4 861 306 0 0 0 chr1 36214137 36214171 -160981261 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 861 692 230 0 7 chr1 36215538 36215674 -160979758 - ID_B1 SINE B4 -3 221 87 4 861 747 284 0 75 chr1 36215780 36215993 -160979439 + B3A SINE B2 2 198 0 4 861 708 165 43 57 chr1 36216010 36216151 -160979281 + B1_Mur1 SINE Alu 1 139 -10 4 861 244 285 34 128 chr1 36216020 36216169 -160979263 + B4A SINE B4 99 233 -59 4 861 483 269 87 15 chr1 36216389 36216585 -160978847 - Tigger7 DNA MER2_type 0 2491 2282 4 861 384 220 115 39 chr1 36217212 36217316 -160978116 + PB1D7 SINE Alu 2 113 -36 4 861 393 218 64 0 chr1 36217756 36217834 -160977598 + PB1 SINE Alu 1 83 -44 4 861 697 249 48 21 chr1 36219484 36219673 -160975759 + MTEb LTR MaLR 28 221 -158 4 861 1543 67 0 5 chr1 36220610 36220805 -160974627 + B2_Mm2 SINE B2 1 194 -1 4 861 665 299 45 0 chr1 36221577 36221731 -160973701 + RSINE1 SINE B4 3 163 -2 4 861 267 31 0 0 chr1 36221735 36221767 -160973665 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 4 861 278 347 0 0 chr1 36221976 36222048 -160973384 + ID4_ SINE ID 2 73 -10 4 861 188 111 28 0 chr1 36222067 36222103 -160973329 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 861 442 214 39 0 chr1 36222810 36222913 -160972519 - PB1D10 SINE Alu -5 112 6 4 861 498 282 30 8 chr1 36223258 36223390 -160972042 + RSINE1 SINE B4 3 137 -28 4 861 329 397 14 14 chr1 36223863 36224011 -160971421 - RSINE1 SINE B4 -13 152 5 4 861 2661 30 131 0 chr1 36224234 36224570 -160970862 + MERVL-int LTR ERVL 1579 1958 -3527 4 861 661 242 70 16 chr1 36225873 36226058 -160969374 + B3A SINE B2 3 197 -1 4 861 251 317 41 24 chr1 36226147 36226270 -160969162 + L1MC4 LINE L1 7537 7661 -381 4 861 27 0 0 0 chr1 36226723 36226750 -160968682 + AT_rich Low_complexity Low_complexity 1 27 0 4 861 1373 202 130 61 chr1 36227660 36227823 -160967609 + RLTR40 LTR ERVK 25 173 -644 4 861 1123 57 14 0 chr1 36227823 36227963 -160967469 - B1_Mus2 SINE Alu -1 146 5 4 861 1373 202 130 61 chr1 36227963 36228079 -160967353 + RLTR40 LTR ERVK 174 308 -509 4 861 261 0 0 0 chr1 36228079 36228108 -160967324 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 861 1373 202 130 61 chr1 36228108 36228350 -160967082 + RLTR40 LTR ERVK 309 582 -235 4 861 278 26 26 0 chr1 36228373 36228412 -160967020 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 861 571 276 26 7 chr1 36228527 36228680 -160966752 - RSINE1 SINE B4 -6 159 4 4 861 233 282 14 40 chr1 36229055 36229129 -160966303 + ID4 SINE ID 5 76 -7 4 861 410 256 112 39 chr1 36229294 36229686 -160965746 + L1M2 LINE L1 5186 5603 -580 4 861 339 25 0 0 chr1 36229882 36229922 -160965510 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 4 861 453 186 10 58 chr1 36232011 36232114 -160963318 + B1_Mur3 SINE Alu 3 100 -49 4 861 567 235 43 22 chr1 36232482 36232621 -160962811 + RSINE1 SINE B4 4 145 -20 4 861 258 194 0 0 chr1 36232652 36232714 -160962718 + (TATG)n Simple_repeat Simple_repeat 2 63 0 4 861 186 43 0 0 chr1 36233656 36233679 -160961753 + (A)n Simple_repeat Simple_repeat 1 23 0 4 861 219 103 0 0 chr1 36234958 36234997 -160960435 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 4 861 210 71 0 0 chr1 36235417 36235445 -160959987 + (T)n Simple_repeat Simple_repeat 1 28 0 4 861 1206 54 0 0 chr1 36235445 36235592 -160959840 - B1_Mus2 SINE Alu 0 147 1 4 861 451 227 403 0 chr1 36236100 36236254 -160959178 - B3 SINE B2 0 216 1 4 861 256 185 0 69 chr1 36237109 36237167 -160958265 + tRNA-Ala-GCY_ tRNA tRNA 15 68 -7 4 861 422 323 90 46 chr1 36237275 36237752 -160957680 + L1M4 LINE L1 835 1332 -5210 4 861 399 255 9 19 chr1 36237756 36237864 -160957568 + PB1D10 SINE Alu 10 116 -1 4 861 209 254 0 14 chr1 36237953 36238025 -160957407 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 861 907 138 14 0 chr1 36238227 36238372 -160957060 - B1_Mur4 SINE Alu 0 150 4 4 861 339 130 0 0 chr1 36238391 36238445 -160956987 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 4 861 496 250 56 48 chr1 36238448 36238574 -160956858 - B1_Mur1 SINE Alu -18 131 5 4 861 393 22 0 0 chr1 36238636 36238682 -160956750 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 861 279 227 39 26 chr1 36239132 36239209 -160956223 + ID4_ SINE ID 6 83 0 4 861 280 333 125 9 chr1 36239604 36239716 -160955716 + RSINE1 SINE B4 12 136 -29 4 861 393 217 36 137 chr1 36239759 36239978 -160955454 + B3A SINE B2 2 198 0 4 861 228 175 123 31 chr1 36240653 36240665 -160954767 - ID_B1 SINE B4 -72 152 82 4 861 254 170 75 0 chr1 36240665 36240718 -160954714 - PB1D10 SINE Alu -60 57 1 4 861 512 198 9 18 chr1 36240964 36241077 -160954355 + PB1D9 SINE Alu 2 113 -7 4 861 264 130 0 0 chr1 36241517 36241563 -160953869 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 4 861 463 214 80 0 chr1 36241563 36241675 -160953757 - B1_Mur1 SINE Alu -6 143 23 4 861 293 245 57 29 chr1 36241842 36241947 -160953485 + PB1D10 SINE Alu 4 111 -6 4 861 209 312 16 0 chr1 36241947 36241978 -160953454 + polypurine Low_complexity Low_complexity 4 34 0 4 861 1495 77 0 15 chr1 36241978 36242175 -160953257 + B2_Mm2 SINE B2 1 194 -1 4 861 209 312 16 0 chr1 36242175 36242207 -160953225 + polypurine Low_complexity Low_complexity 35 67 0 4 861 544 286 43 24 chr1 36243095 36243306 -160952126 + B3 SINE B2 2 216 0 4 861 1061 44 0 56 chr1 36243329 36243473 -160951959 + B1_Mm SINE Alu 2 137 -10 4 861 180 0 0 0 chr1 36243473 36243493 -160951939 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 861 819 181 0 22 chr1 36243540 36243676 -160951756 + B1_Mur3 SINE Alu 1 133 -16 4 861 2063 130 53 19 chr1 36243679 36244055 -160951377 + ORR1B1 LTR MaLR 6 394 0 4 861 243 209 15 15 chr1 36244068 36244136 -160951296 + A-rich Low_complexity Low_complexity 2 69 0 4 861 563 162 20 0 chr1 36244181 36244280 -160951152 + B1_Mur4 SINE Alu 46 146 -4 5 861 617 218 52 8 chr1 36244438 36244572 -160950860 + B1F1 SINE Alu 2 141 -8 5 861 257 331 58 7 chr1 36244692 36244829 -160950603 + L1MC3 LINE L1 5491 5634 -710 5 861 396 59 0 0 chr1 36244892 36244943 -160950489 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 861 503 226 89 0 chr1 36244959 36245105 -160950327 + MTD-int LTR MaLR 1088 1246 -12 5 861 1422 183 104 16 chr1 36245116 36245494 -160949938 + MTD LTR MaLR 4 405 -14 5 861 339 225 25 0 chr1 36245498 36245578 -160949854 + L1MC3 LINE L1 5745 5826 -518 5 861 379 301 0 0 chr1 36245587 36245670 -160949762 + PB1D10 SINE Alu 9 91 -26 5 861 455 264 36 24 chr1 36245732 36245899 -160949533 + L1MC3 LINE L1 5865 6033 -1752 5 861 230 222 0 0 chr1 36246021 36246066 -160949366 - tRNA-Ala-GCA tRNA tRNA -21 54 10 5 861 987 79 237 7 chr1 36246090 36246242 -160949190 - B2_Mm2 SINE B2 -7 188 2 5 861 359 232 119 15 chr1 36246277 36246409 -160949023 - B1_Mus2 SINE Alu -4 145 1 5 861 616 222 22 0 chr1 36246439 36246574 -160948858 - B1_Mur2 SINE Alu -9 140 3 5 861 297 0 0 0 chr1 36246625 36246658 -160948774 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 861 895 270 43 7 chr1 36246697 36246957 -160948475 + MTD LTR MaLR 6 286 -133 5 861 616 227 79 83 chr1 36247513 36247729 -160947703 - B3A SINE B2 -1 215 1 5 861 446 208 31 0 chr1 36247757 36247853 -160947579 + B1_Mur1 SINE Alu 6 104 -45 5 861 36 23 0 0 chr1 36247874 36247917 -160947515 + AT_rich Low_complexity Low_complexity 1 43 0 5 861 438 308 33 0 chr1 36248911 36249031 -160946401 + ID_B1 SINE B4 2 125 -99 5 861 318 196 60 17 chr1 36249451 36249585 -160945847 + B1F2 SINE Alu 5 146 -3 5 861 2721 115 52 2 chr1 36250287 36250688 -160944744 + MTC LTR MaLR 1 421 0 5 861 1491 63 16 16 chr1 36250732 36250925 -160944507 - B2_Mm2 SINE B2 -2 193 1 5 861 873 161 36 0 chr1 36251145 36251282 -160944150 - B1_Mur2 SINE Alu -6 143 2 5 861 21 0 0 0 chr1 36252206 36252227 -160943205 + AT_rich Low_complexity Low_complexity 1 21 0 5 861 506 283 24 36 chr1 36252253 36252418 -160943014 - B3A SINE B2 -34 164 2 5 861 243 79 0 0 chr1 36252520 36252558 -160942874 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 861 239 213 43 0 chr1 36252875 36252922 -160942510 + ID SINE ID 25 73 -151 5 861 378 0 0 0 chr1 36252926 36252968 -160942464 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 861 811 232 149 8 chr1 36253187 36253435 -160941997 - B4A SINE B4 -8 284 2 5 861 1265 91 23 6 chr1 36253520 36253696 -160941736 + B2_Mm1t SINE B2 1 179 -14 5 861 326 84 324 18 chr1 36253743 36253854 -160941578 + B2_Mm2 SINE B2 47 191 -4 5 861 338 152 0 57 chr1 36253867 36253937 -160941495 - RSINE1 SINE B4 -57 108 43 5 861 248 250 12 0 chr1 36254289 36254369 -160941063 + GA-rich Low_complexity Low_complexity 4 84 0 5 861 1207 48 7 0 chr1 36254591 36254737 -160940695 + B1_Mm SINE Alu 1 147 0 5 861 777 278 37 54 chr1 36254956 36255253 -160940179 + B4A SINE B4 1 292 0 5 861 289 208 67 67 chr1 36255834 36256014 -160939418 + (CAGTG)n Simple_repeat Simple_repeat 1 180 0 5 861 286 147 211 0 chr1 36256351 36256446 -160938986 + Lx9 LINE L1 7527 7641 -3 5 861 232 282 24 71 chr1 36256732 36256816 -160938616 + RSINE1 SINE B4 85 164 -1 5 861 333 267 72 51 chr1 36257662 36257800 -160937632 - B1F SINE Alu 0 149 9 5 861 654 152 120 0 chr1 36257927 36258052 -160937380 + B1_Mus2 SINE Alu 2 141 -6 5 861 521 125 11 0 chr1 36258059 36258147 -160937285 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 5 861 238 361 0 35 chr1 36259244 36259269 -160936163 - BC1_Mm scRNA scRNA -54 98 16 5 861 261 295 0 0 chr1 36259269 36259330 -160936102 - tRNA-Ala-GCY_ tRNA tRNA -5 70 10 5 861 350 340 0 47 chr1 36260167 36260337 -160935095 + RSINE1 SINE B4 2 163 -2 5 861 238 246 66 0 chr1 36260371 36260432 -160935000 + ID4_ SINE ID 9 73 -10 5 861 21 0 0 0 chr1 36260432 36260453 -160934979 + AT_rich Low_complexity Low_complexity 1 21 0 5 861 5723 230 75 146 chr1 36260656 36262105 -160933327 + L1_Rod LINE L1 1490 3029 -2818 5 861 993 103 148 0 chr1 36262105 36262260 -160933172 + B2_Mm1t SINE B2 2 179 -14 5 861 5723 230 75 146 chr1 36262260 36262307 -160933125 + L1_Rod LINE L1 3030 3074 -2773 5 861 349 89 152 66 chr1 36262307 36262416 -160933016 + B2_Mm2 SINE B2 47 185 -8 5 861 5723 230 75 146 chr1 36262416 36263251 -160932181 + L1_Rod LINE L1 3075 3880 -1967 5 861 831 133 40 34 chr1 36263251 36263399 -160932033 + B1_Mur1 SINE Alu 1 149 0 5 861 5723 230 75 146 chr1 36263399 36263732 -160931700 + L1_Rod LINE L1 3881 4204 -1643 5 861 1441 58 0 50 chr1 36263732 36263890 -160931542 + B2_Mm1a SINE B2 3 160 -33 5 861 246 32 0 0 chr1 36263890 36263921 -160931511 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 861 1441 58 0 50 chr1 36263921 36263963 -160931469 + B2_Mm1a SINE B2 161 193 0 5 861 5723 230 75 146 chr1 36263963 36264093 -160931339 + L1_Rod LINE L1 4205 4327 -1520 5 861 385 271 18 18 chr1 36264101 36264210 -160931222 + Lx9 LINE L1 7361 7469 -175 5 861 336 48 0 0 chr1 36264210 36264252 -160931180 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 861 257 178 160 15 chr1 36264253 36264384 -160931048 + Lx9 LINE L1 7419 7568 -76 5 861 324 0 0 0 chr1 36264410 36264446 -160930986 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 861 605 199 187 33 chr1 36264537 36264719 -160930713 - ID_B1 SINE B4 -13 211 2 5 861 238 303 40 0 chr1 36265109 36265208 -160930224 + RSINE1 SINE B4 2 104 -61 5 861 23 0 0 0 chr1 36265252 36265275 -160930157 + AT_rich Low_complexity Low_complexity 1 23 0 5 861 21 0 0 0 chr1 36265441 36265462 -160929970 + AT_rich Low_complexity Low_complexity 1 21 0 5 861 2843 120 19 0 chr1 36265637 36266061 -160929371 + Lx4A LINE L1 6625 7056 -2 5 861 531 256 36 14 chr1 36266092 36266231 -160929201 + B1_Mur2 SINE Alu 2 143 -6 5 861 941 110 52 0 chr1 36266245 36266381 -160929051 + B1_Mur3 SINE Alu 2 144 -5 5 861 23 86 0 0 chr1 36267092 36267150 -160928282 + AT_rich Low_complexity Low_complexity 1 58 0 5 861 874 163 7 26 chr1 36267560 36267711 -160927721 + B1_Mur3 SINE Alu 2 149 0 5 861 755 224 140 4 chr1 36268449 36268678 -160926754 + Lx9 LINE L1 7369 7628 -16 5 861 26 0 0 0 chr1 36268694 36268720 -160926712 + AT_rich Low_complexity Low_complexity 1 26 0 5 861 368 269 41 77 chr1 36268737 36268906 -160926526 + Lx8 LINE L1 6565 6727 -746 5 861 254 345 25 50 chr1 36268938 36269057 -160926375 + PB1D10 SINE Alu 2 117 0 5 861 211 220 0 0 chr1 36269802 36269852 -160925580 + A-rich Low_complexity Low_complexity 1 50 0 5 861 1462 70 38 0 chr1 36270024 36270210 -160925222 - B2_Mm2 SINE B2 -1 194 2 5 861 198 0 0 0 chr1 36270229 36270251 -160925181 + (A)n Simple_repeat Simple_repeat 1 22 0 5 861 423 324 0 0 chr1 36272161 36272269 -160923163 - PB1D7 SINE Alu -12 108 1 5 861 343 231 158 79 chr1 36272420 36272622 -160922810 + B4A SINE B4 28 245 -47 5 861 657 186 48 0 chr1 36272659 36272783 -160922649 + B1_Mur1 SINE Alu 20 149 0 5 861 255 239 0 29 chr1 36272788 36272857 -160922575 + GA-rich Low_complexity Low_complexity 2 68 0 5 861 25 83 0 0 chr1 36273317 36273377 -160922055 + AT_rich Low_complexity Low_complexity 1 60 0 5 861 388 202 11 11 chr1 36273614 36273704 -160921728 - B1_Mur4 SINE Alu -56 94 5 5 861 336 258 10 41 chr1 36273620 36273717 -160921715 - B4 SINE B4 -119 173 80 5 861 1599 42 0 5 chr1 36273781 36273971 -160921461 + B2_Mm1a SINE B2 1 189 -4 5 861 837 221 82 37 chr1 36273999 36274267 -160921165 + ORR1E LTR MaLR 1 280 -79 5 861 1422 214 120 20 chr1 36274277 36274635 -160920797 + MTD LTR MaLR 12 405 -14 5 861 246 62 0 0 chr1 36275082 36275114 -160920318 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 861 375 132 0 29 chr1 36275114 36275184 -160920248 - B1_Mus2 SINE Alu 0 147 80 5 861 1415 47 5 5 chr1 36275174 36275365 -160920067 + MTA_Mm LTR MaLR 206 396 0 5 861 7933 68 9 69 chr1 36275365 36276534 -160918898 + MTA_Mm-int LTR MaLR 1 1098 0 5 861 3181 37 39 0 chr1 36276534 36276915 -160918517 + MTA_Mm LTR MaLR 1 396 0 5 861 608 81 0 0 chr1 36276918 36277005 -160918427 - B1_Mus1 SINE Alu -60 88 2 5 861 411 21 0 0 chr1 36277160 36277208 -160918224 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 861 489 204 78 35 chr1 36277821 36277963 -160917469 + B1_Mur2 SINE Alu 1 148 -1 5 861 255 122 0 0 chr1 36278474 36278523 -160916909 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 861 545 358 5 65 chr1 36278527 36278742 -160916690 - B4A SINE B4 0 292 91 5 861 442 207 23 0 chr1 36278793 36278880 -160916552 + RSINE1 SINE B4 41 129 -36 5 861 405 86 0 0 chr1 36278893 36278951 -160916481 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 861 21 57 0 0 chr1 36278968 36279003 -160916429 + AT_rich Low_complexity Low_complexity 1 35 0 5 861 1433 85 5 0 chr1 36279031 36279220 -160916212 + B2_Mm1a SINE B2 1 190 -3 5 861 488 313 12 35 chr1 36279437 36279606 -160915826 + Lx8 LINE L1 6234 6398 -1075 5 861 357 247 10 25 chr1 36279606 36279699 -160915733 + B3A SINE B2 1 96 -99 5 861 1173 100 0 0 chr1 36279727 36279897 -160915535 + (CA)n Simple_repeat Simple_repeat 1 170 0 5 861 1939 269 136 39 chr1 36279932 36280697 -160914735 + Lx8 LINE L1 6385 7223 -250 5 861 241 358 42 0 chr1 36280706 36280801 -160914631 + RMER15 LTR ERVL 371 469 -106 5 861 613 322 11 5 chr1 36280908 36281092 -160914340 + B3 SINE B2 26 210 -6 5 861 232 370 21 21 chr1 36281167 36281203 -160914229 + B4A SINE B4 52 87 -205 5 861 303 327 36 7 chr1 36281203 36281307 -160914125 + PB1D7 SINE Alu 1 104 -16 5 861 460 287 128 5 chr1 36281799 36281995 -160913437 + B4A SINE B4 43 262 -30 5 861 471 18 0 0 chr1 36282000 36282056 -160913376 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 861 356 269 58 0 chr1 36282198 36282302 -160913130 + MER3 DNA MER1_type 67 176 -33 6 861 327 183 0 32 chr1 36282408 36282470 -160912962 + B3A SINE B2 2 61 -137 6 861 350 267 56 20 chr1 36282559 36282735 -160912697 + L1M3 LINE L1 5413 5602 -757 6 861 219 289 19 0 chr1 36282740 36282792 -160912640 + ID4_ SINE ID 1 53 -30 6 861 321 286 119 73 chr1 36282831 36283008 -160912424 - ORR1D2 LTR MaLR -3 367 183 6 861 481 195 24 8 chr1 36283008 36283132 -160912300 + L1_Mur3 LINE L1 5163 5288 -592 6 861 707 200 8 24 chr1 36283134 36283257 -160912175 + B1_Mur4 SINE Alu 13 133 -17 6 861 180 0 0 0 chr1 36284045 36284065 -160911367 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 6 861 1115 83 0 14 chr1 36284065 36284204 -160911228 - B1_Mus1 SINE Alu -9 139 1 6 861 195 308 104 74 chr1 36284614 36284845 -160910587 + L2c LINE L2 3005 3242 -145 6 861 242 322 72 80 chr1 36285530 36285655 -160909777 - B4A SINE B4 -168 124 1 6 861 1270 109 11 0 chr1 36285870 36286053 -160909379 + B2_Mm1t SINE B2 2 186 -7 6 861 493 295 52 6 chr1 36286160 36286334 -160909098 - B3A SINE B2 -15 183 2 6 861 221 284 105 74 chr1 36287184 36287279 -160908153 + PB1D7 SINE Alu 22 119 -1 6 861 333 0 0 0 chr1 36287701 36287738 -160907694 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 861 374 295 0 71 chr1 36289450 36289563 -160905869 + PB1D10 SINE Alu 1 105 -12 6 861 982 239 4 18 chr1 36290383 36290609 -160904823 + ID_B1 SINE B4 1 223 -1 6 861 355 319 0 8 chr1 36290708 36290825 -160904607 - PB1D10 SINE Alu -1 116 1 6 861 277 250 39 65 chr1 36290852 36290929 -160904503 - BC1_Mm scRNA scRNA -77 75 1 6 861 675 253 13 19 chr1 36291045 36291202 -160904230 - ID_B1 SINE B4 -4 220 65 6 861 337 314 72 46 chr1 36292098 36292335 -160903097 + MLT1B LTR MaLR 8 250 -140 6 861 216 0 0 0 chr1 36292737 36292761 -160902671 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 6 861 217 263 17 17 chr1 36292875 36292933 -160902499 + B1F SINE Alu 1 58 -91 6 861 25 0 0 0 chr1 36292955 36292980 -160902452 + AT_rich Low_complexity Low_complexity 1 25 0 6 861 713 145 16 31 chr1 36292986 36293114 -160902318 + B1_Mur3 SINE Alu 11 136 -13 6 861 295 263 99 99 chr1 36293281 36293304 -160902128 + B4 SINE B4 77 223 -64 6 861 757 121 48 0 chr1 36293304 36293428 -160902004 + B1_Mus1 SINE Alu 18 147 -1 6 861 1565 42 16 0 chr1 36293513 36293702 -160901730 + B2_Mm2 SINE B2 3 194 -1 6 861 182 37 0 36 chr1 36293823 36293851 -160901581 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 6 861 1666 214 131 18 chr1 36293871 36294322 -160901110 + Lx7 LINE L1 6909 7410 -286 6 861 360 0 0 0 chr1 36294412 36294452 -160900980 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 6 861 1176 57 0 0 chr1 36294453 36294593 -160900839 - B1_Mus2 SINE Alu -7 140 1 6 861 370 240 23 46 chr1 36294596 36294727 -160900705 + Lx7 LINE L1 7569 7696 0 6 861 1418 302 114 35 chr1 36294731 36295028 -160900404 + L1_Rod LINE L1 4641 4970 -877 6 861 944 151 21 53 chr1 36295028 36295180 -160900252 + B2_Mm2 SINE B2 2 150 -45 6 861 261 0 0 0 chr1 36295180 36295209 -160900223 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 6 861 944 151 21 53 chr1 36295209 36295245 -160900187 + B2_Mm2 SINE B2 151 184 -11 6 861 1418 302 114 35 chr1 36295245 36295950 -160899482 + L1_Rod LINE L1 4971 5726 -121 6 861 285 29 0 0 chr1 36295950 36295984 -160899448 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 861 1418 302 114 35 chr1 36295984 36296089 -160899343 + L1_Rod LINE L1 5727 5834 -13 6 861 573 229 53 8 chr1 36296766 36296898 -160898534 + B1_Mm SINE Alu 1 138 -9 6 861 567 0 0 0 chr1 36296919 36296982 -160898450 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 6 861 1092 70 28 0 chr1 36297603 36297745 -160897687 + B1_Mus2 SINE Alu 2 147 0 6 861 495 188 0 12 chr1 36297797 36297883 -160897549 + B1_Mur1 SINE Alu 58 142 -7 6 861 182 91 30 0 chr1 36297934 36297967 -160897465 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 6 861 21 0 0 0 chr1 36297970 36297991 -160897441 + AT_rich Low_complexity Low_complexity 1 21 0 6 861 904 211 58 10 chr1 36297993 36298199 -160897233 - B3 SINE B2 0 216 1 6 861 252 0 0 0 chr1 36298274 36298302 -160897130 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 861 587 300 37 28 chr1 36298379 36298595 -160896837 - B3A SINE B2 0 216 1 6 861 322 270 0 83 chr1 36299112 36299233 -160896199 - PB1D10 SINE Alu -6 111 1 6 861 225 0 0 0 chr1 36299348 36299373 -160896059 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 861 637 230 16 0 chr1 36299651 36299777 -160895655 + RSINE1 SINE B4 2 129 -36 6 861 201 129 0 0 chr1 36299811 36299842 -160895590 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 6 861 511 202 0 76 chr1 36299918 36300036 -160895396 + RSINE1 SINE B4 9 117 -48 6 861 21 0 0 0 chr1 36300064 36300085 -160895347 + AT_rich Low_complexity Low_complexity 1 21 0 6 861 781 128 17 0 chr1 36301463 36301580 -160893852 + PB1D9 SINE Alu 2 120 0 6 861 225 156 0 0 chr1 36301589 36301621 -160893811 + B1F2 SINE Alu 47 78 -71 6 861 470 246 117 16 chr1 36301667 36301795 -160893637 + Lx8 LINE L1 6864 7004 -469 6 861 574 294 93 47 chr1 36301866 36302144 -160893288 + B4A SINE B4 2 292 0 6 861 246 192 0 0 chr1 36302144 36302196 -160893236 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 861 682 255 12 24 chr1 36302220 36302385 -160893047 + B4 SINE B4 126 288 -4 6 861 198 0 0 0 chr1 36302553 36302575 -160892857 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6 861 294 258 0 43 chr1 36302871 36302940 -160892492 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 6 861 1151 184 0 5 chr1 36302968 36303165 -160892267 + B3 SINE B2 1 196 -20 6 861 1539 109 28 29 chr1 36303169 36303468 -160891964 - MT2C_Mm LTR ERVL 0 475 209 6 861 792 286 54 0 chr1 36303469 36303693 -160891739 + Lx8 LINE L1 6868 7103 -370 6 861 1796 156 123 50 chr1 36303694 36304132 -160891300 + RLTR20B3 LTR ERVK 1 470 -107 6 861 470 263 234 23 chr1 36304133 36304308 -160891124 + B3 SINE B2 1 212 -4 6 861 311 224 185 20 chr1 36304317 36304373 -160891059 - MER33 DNA MER1_type -144 180 114 6 861 276 30 0 0 chr1 36304373 36304406 -160891026 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 861 311 224 185 20 chr1 36304406 36304495 -160890937 - MER33 DNA MER1_type -211 113 11 6 861 272 272 45 80 chr1 36304491 36304504 -160890928 + B1F SINE Alu 59 143 -6 6 861 313 233 40 27 chr1 36304504 36304579 -160890853 + ID_B1 SINE B4 145 220 -4 6 861 706 221 24 0 chr1 36304720 36304847 -160890585 - B1_Mur1 SINE Alu -10 139 10 6 861 341 311 37 92 chr1 36304737 36304900 -160890532 - MT2B LTR ERVL -323 278 125 6 861 1263 251 78 36 chr1 36305022 36305201 -160890231 + RMER6A LTR ERVK 201 517 -203 6 861 1006 131 22 49 chr1 36305201 36305385 -160890047 + B2_Mm2 SINE B2 1 179 -16 6 861 1263 247 87 41 chr1 36305385 36305762 -160889670 + RMER6A LTR ERVK 362 756 0 6 861 312 27 0 0 chr1 36305831 36305868 -160889564 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 861 228 118 0 0 chr1 36305885 36305919 -160889513 - B3 SINE B2 -182 34 1 6 861 1070 66 111 13 chr1 36306235 36306388 -160889044 + B2_Mm2 SINE B2 1 168 -27 6 861 294 207 68 110 chr1 36306437 36306600 -160888832 + RLTR25B LTR ERVK 347 502 -526 6 861 604 160 0 0 chr1 36306523 36306623 -160888809 + B1_Mur2 SINE Alu 29 128 -21 6 107 589 241 76 29 chr1 36306935 36307106 -160888326 + ID_B1 SINE B4 45 223 -1 6 862 365 222 51 210 chr1 36307109 36307366 -160888066 + B3 SINE B2 1 216 0 6 862 662 119 168 8 chr1 36307386 36307505 -160887927 + B1_Mur4 SINE Alu 1 138 -12 6 862 180 0 0 0 chr1 36307505 36307525 -160887907 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 862 2026 152 98 14 chr1 36307864 36308232 -160887200 - MTB_Mm LTR MaLR 0 407 9 6 862 323 206 16 0 chr1 36308230 36308293 -160887139 + ID_B1 SINE B4 122 185 -39 6 862 182 0 0 97 chr1 36308673 36308704 -160886728 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 6 862 410 169 0 67 chr1 36308756 36308845 -160886587 - RMER30 DNA MER1_type -35 167 85 6 862 621 248 20 7 chr1 36308853 36308999 -160886433 - RSINE1 SINE B4 -4 161 14 6 862 840 236 54 75 chr1 36309258 36309538 -160885894 + B4A SINE B4 3 276 -16 6 862 243 0 0 0 chr1 36309580 36309607 -160885825 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 6 862 291 71 0 0 chr1 36310261 36310303 -160885129 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 6 862 333 0 0 0 chr1 36310304 36310341 -160885091 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 862 252 77 0 0 chr1 36310342 36310381 -160885051 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 862 467 346 112 19 chr1 36310381 36310640 -160884792 - B4 SINE B4 -9 283 1 6 862 369 0 0 0 chr1 36310819 36310860 -160884572 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 862 699 253 16 42 chr1 36310870 36311060 -160884372 - B4A SINE B4 -82 210 26 6 862 682 175 8 62 chr1 36311072 36311200 -160884232 - B1_Mur1 SINE Alu 0 149 29 6 862 624 180 9 26 chr1 36313095 36313195 -160882237 + PB1D7 SINE Alu 9 109 -11 6 862 213 65 0 0 chr1 36313195 36313226 -160882206 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 862 824 183 51 17 chr1 36313226 36313404 -160882028 - B2_Mm2 SINE B2 -10 185 2 6 862 624 180 9 26 chr1 36313404 36313416 -160882016 + PB1D7 SINE Alu 110 119 -1 6 862 723 240 87 0 chr1 36313507 36313690 -160881742 - ID_B1 SINE B4 0 224 26 6 862 282 56 0 0 chr1 36313877 36313913 -160881519 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 862 650 267 46 30 chr1 36313914 36314111 -160881321 - B3 SINE B2 -16 200 1 6 862 365 219 270 25 chr1 36314112 36314271 -160881161 - B3A SINE B2 0 198 1 7 862 302 323 136 29 chr1 36314272 36314581 -160880851 - L1MB8 LINE L1 -273 5905 5564 7 862 412 244 24 50 chr1 36314781 36314912 -160880520 + PB1D10 SINE Alu 28 149 0 7 862 638 247 171 74 chr1 36315082 36315317 -160880115 - RMER4B LTR ERVK -12 573 307 7 862 1393 71 11 0 chr1 36315317 36315499 -160879933 - B2_Mm1t SINE B2 -9 184 1 7 862 638 247 171 74 chr1 36315499 36315521 -160879911 - RMER4B LTR ERVK -279 306 291 7 862 447 265 5 0 chr1 36315530 36315987 -160879445 + GA-rich Low_complexity Low_complexity 1 459 0 7 862 816 187 194 14 chr1 36315999 36316221 -160879211 - RMER4B LTR ERVK -323 262 1 7 862 669 231 38 19 chr1 36316503 36316662 -160878770 - RSINE1 SINE B4 -1 164 3 7 862 1688 31 0 0 chr1 36316681 36316873 -160878559 - B2_Mm1a SINE B2 0 193 2 7 862 1071 107 6 11 chr1 36316910 36317090 -160878342 + (GAA)n Simple_repeat Simple_repeat 1 179 0 7 862 407 52 0 17 chr1 36317090 36317149 -160878283 + (GGA)n Simple_repeat Simple_repeat 1 58 0 7 862 990 153 0 13 chr1 36317370 36317522 -160877910 + B1_Mur4 SINE Alu 1 150 0 7 862 373 305 169 9 chr1 36317979 36318204 -160877228 - L1MA6 LINE L1 -2 6310 6050 7 862 543 285 182 67 chr1 36318225 36318702 -160876730 - L1MA6 LINE L1 -409 5891 5360 7 862 342 336 16 16 chr1 36318863 36318987 -160876445 + Tigger5 DNA MER2_type 2282 2405 -1 7 862 315 304 88 0 chr1 36319076 36319178 -160876254 - PB1D7 SINE Alu -2 118 8 7 862 476 306 110 16 chr1 36319208 36319454 -160875978 - HAL1 LINE L1 -1611 896 628 7 862 509 230 234 6 chr1 36319489 36319664 -160875768 - B3 SINE B2 0 216 2 7 862 656 258 0 0 chr1 36319835 36319963 -160875469 - B1F SINE Alu -8 141 14 7 862 771 42 0 0 chr1 36320077 36320172 -160875260 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 7 862 1129 103 5 107 chr1 36320236 36320442 -160874990 - B2_Mm1t SINE B2 -7 186 2 7 862 523 174 9 9 chr1 36320531 36320647 -160874785 + (TA)n Simple_repeat Simple_repeat 2 117 0 7 862 367 301 0 28 chr1 36320647 36320753 -160874679 - RMER12 LTR ERVK -467 855 753 7 862 2289 110 3 57 chr1 36321450 36321816 -160873616 - ORR1A1 LTR MaLR 0 346 1 7 862 682 267 90 11 chr1 36321862 36322051 -160873381 - MTE2a LTR MaLR -23 356 153 7 862 1203 116 0 0 chr1 36322062 36322234 -160873198 + URR1A DNA MER1_type 55 226 0 7 862 537 247 22 168 chr1 36322235 36322420 -160873012 - MTE2a LTR MaLR -219 160 3 7 862 318 236 34 0 chr1 36323651 36323740 -160871692 + Tigger7 DNA MER2_type 2286 2377 -114 7 862 22 0 0 0 chr1 36323949 36323971 -160871461 + AT_rich Low_complexity Low_complexity 1 22 0 7 862 464 215 122 0 chr1 36323981 36324088 -160871344 - B1_Mur3 SINE Alu -21 128 9 7 862 225 300 18 83 chr1 36324011 36324120 -160871312 - B4 SINE B4 -123 169 68 7 862 290 236 51 60 chr1 36324114 36324231 -160871201 - BC1_Mm scRNA scRNA -31 121 6 7 862 665 245 144 15 chr1 36324256 36324451 -160870981 - ID_B1 SINE B4 -2 222 3 7 862 474 263 12 3 chr1 36324453 36324788 -160870644 + (TG)n Simple_repeat Simple_repeat 1 338 0 7 862 659 247 18 12 chr1 36324795 36324963 -160870469 - B4A SINE B4 -2 290 122 7 862 308 291 34 34 chr1 36325073 36325162 -160870270 + B3 SINE B2 1 89 -127 7 862 390 184 0 0 chr1 36325613 36325689 -160869743 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 862 202 143 0 23 chr1 36325776 36325819 -160869613 + T-rich Low_complexity Low_complexity 2 43 0 7 862 320 168 47 116 chr1 36326883 36326996 -160868436 + B1F SINE Alu 7 148 -1 7 862 534 276 13 19 chr1 36327050 36327205 -160868227 - RSINE1 SINE B4 -10 155 2 7 862 277 73 54 18 chr1 36329349 36329405 -160866027 + (TCTCCC)n Simple_repeat Simple_repeat 1 58 0 7 862 254 330 22 0 chr1 36330565 36330656 -160864776 - MER5B DNA MER1_type -68 110 18 7 862 1527 43 27 0 chr1 36330897 36331084 -160864348 + B2_Mm1a SINE B2 1 192 -1 7 862 185 0 40 0 chr1 36331136 36331161 -160864271 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 7 862 362 236 285 0 chr1 36332139 36332262 -160863170 + RSINE1 SINE B4 5 162 -3 7 862 285 163 0 0 chr1 36332295 36332344 -160863088 - ID SINE ID -171 53 5 7 862 443 244 168 17 chr1 36332440 36332619 -160862813 - B3 SINE B2 -1 215 10 7 862 496 315 29 65 chr1 36332632 36332907 -160862525 - Lx8 LINE L1 -59 7414 7150 7 862 350 296 35 49 chr1 36333051 36333193 -160862239 + L1MA4 LINE L1 5793 5932 -368 7 862 243 224 52 0 chr1 36333225 36333283 -160862149 + ID4 SINE ID 7 67 -16 7 862 529 254 8 0 chr1 36333339 36333457 -160861975 - PB1D7 SINE Alu -1 119 1 7 862 234 278 43 77 chr1 36333656 36333773 -160861659 - MIR SINE MIR -36 226 114 7 862 527 218 8 39 chr1 36333789 36333918 -160861514 + RSINE1 SINE B4 6 130 -35 7 862 1058 8 16 0 chr1 36333932 36334058 -160861374 + (GGAGAA)n Simple_repeat Simple_repeat 5 132 0 7 862 1422 79 11 0 chr1 36334862 36335052 -160860380 - B2_Mm1a SINE B2 0 193 2 7 862 1143 103 10 42 chr1 36335057 36335224 -160860208 - B2_Mm1t SINE B2 -6 187 22 7 862 4225 25 19 2 chr1 36335224 36335707 -160859725 + MT2_Mm LTR ERVL 3 493 0 7 862 1143 103 10 42 chr1 36335707 36335731 -160859701 - B2_Mm1t SINE B2 -172 21 2 7 862 252 257 43 0 chr1 36335779 36335849 -160859583 + MER2B DNA MER2_type 264 336 0 7 862 291 28 0 0 chr1 36335957 36335993 -160859439 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 862 815 254 65 10 chr1 36336481 36336680 -160858752 + B3 SINE B2 2 211 -5 7 862 3333 45 5 12 chr1 36336693 36337094 -160858338 + MTB LTR MaLR 3 400 0 7 862 216 0 0 0 chr1 36337097 36337121 -160858311 + (T)n Simple_repeat Simple_repeat 1 24 0 7 862 1153 245 45 53 chr1 36337176 36337205 -160858227 + ORR1D1 LTR MaLR 3 31 -343 7 862 1253 92 31 42 chr1 36337205 36337398 -160858034 + B2_Mm2 SINE B2 2 192 -3 7 862 1153 245 45 53 chr1 36337398 36337743 -160857689 + ORR1D1 LTR MaLR 32 374 0 7 862 232 200 33 16 chr1 36338094 36338155 -160857277 + 4.5SRNA scRNA scRNA 25 86 -8 7 862 586 113 18 45 chr1 36338102 36338213 -160857219 + B1_Mur2 SINE Alu 41 148 -1 7 862 450 282 0 49 chr1 36338241 36338349 -160857083 + PB1D7 SINE Alu 3 109 -11 7 862 306 0 0 0 chr1 36338349 36338383 -160857049 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 862 450 282 0 49 chr1 36338383 36338397 -160857035 + PB1D7 SINE Alu 110 119 -1 7 862 245 283 228 0 chr1 36338680 36338772 -160856660 + ORR1E LTR MaLR 1 113 -246 7 862 718 248 42 51 chr1 36338773 36338990 -160856442 + B3 SINE B2 2 216 0 7 862 467 319 66 85 chr1 36339084 36339452 -160855980 - ORR1E LTR MaLR -2 368 1 7 862 722 116 41 0 chr1 36339452 36339565 -160855867 + B1_Mur4 SINE Alu 32 149 -1 7 862 906 103 62 0 chr1 36339572 36339717 -160855715 + B2_Mm1t SINE B2 5 158 -35 7 862 302 139 0 39 chr1 36339787 36339854 -160855578 + B2_Mm2 SINE B2 47 109 -107 7 862 22 0 0 0 chr1 36339866 36339888 -160855544 + AT_rich Low_complexity Low_complexity 1 22 0 7 862 264 273 88 32 chr1 36339995 36340120 -160855312 + MLT1A1 LTR MaLR 247 378 -30 7 862 848 210 36 111 chr1 36340268 36340493 -160854939 - B3 SINE B2 -7 209 2 7 862 667 116 127 22 chr1 36340653 36340814 -160854618 + RLTR19 LTR ERVK 3 198 -301 7 862 1303 208 81 44 chr1 36340814 36341194 -160854238 - RLTR20B3 LTR ERVK -2 539 149 7 862 288 129 0 0 chr1 36341194 36341214 -160854218 + (A)n Simple_repeat Simple_repeat 1 20 0 7 862 1247 48 7 0 chr1 36341214 36341361 -160854071 + B1_Mus1 SINE Alu 1 148 0 7 862 288 129 0 0 chr1 36341361 36341402 -160854030 + (A)n Simple_repeat Simple_repeat 1 41 0 7 862 768 195 52 29 chr1 36341436 36341610 -160853822 - RLTR20B3 LTR ERVK -399 178 1 7 862 913 241 52 68 chr1 36341610 36341916 -160853516 + RLTR19 LTR ERVK 199 499 0 7 862 423 247 21 0 chr1 36342057 36342150 -160853282 + B4A SINE B4 1 95 -197 7 862 736 170 6 96 chr1 36342150 36342306 -160853126 + B1_Mur2 SINE Alu 2 143 -6 7 862 365 211 0 133 chr1 36342414 36342434 -160852998 + MT2B LTR ERVL 152 155 -446 7 862 729 106 18 9 chr1 36342434 36342548 -160852884 + B1_Mur3 SINE Alu 1 115 -34 7 862 2419 108 21 5 chr1 36342551 36342932 -160852500 - ORR1B1 LTR MaLR -7 387 1 7 862 1564 172 52 16 chr1 36342993 36343096 -160852336 - MTD LTR MaLR -91 328 229 7 862 4594 10 0 0 chr1 36343096 36343589 -160851843 + MT2_Mm LTR ERVL 1 493 0 7 862 1564 172 52 16 chr1 36343589 36343792 -160851640 - MTD LTR MaLR -191 228 12 7 862 952 170 0 0 chr1 36343797 36343944 -160851488 + B1_Mur4 SINE Alu 2 148 -2 7 862 464 0 0 18 chr1 36343944 36344001 -160851431 + (TAA)n Simple_repeat Simple_repeat 2 57 0 7 862 1134 112 5 38 chr1 36345109 36345276 -160850156 + B2_Mm2 SINE B2 2 168 -27 7 862 297 0 0 0 chr1 36345276 36345309 -160850123 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 862 1134 112 5 38 chr1 36345309 36345326 -160850106 + B2_Mm2 SINE B2 169 180 -15 7 862 21 36 0 0 chr1 36345338 36345366 -160850066 + AT_rich Low_complexity Low_complexity 1 28 0 7 862 663 155 92 8 chr1 36345656 36345786 -160849646 - B1_Mur4 SINE Alu 0 150 10 7 862 400 294 35 35 chr1 36345661 36345802 -160849630 - B4 SINE B4 -71 221 81 7 862 214 219 42 121 chr1 36345840 36345984 -160849448 + B4 SINE B4 33 165 0 7 862 286 210 32 8 chr1 36345984 36346109 -160849323 + (CA)n Simple_repeat Simple_repeat 1 128 0 7 862 189 107 0 0 chr1 36346114 36346142 -160849290 + (TTA)n Simple_repeat Simple_repeat 1 28 0 7 862 324 357 93 46 chr1 36346289 36346483 -160848949 + L1MEd LINE L1 1055 1257 -4862 7 862 863 233 47 37 chr1 36346580 36346794 -160848638 + B3 SINE B2 1 216 0 7 862 287 169 129 43 chr1 36347013 36347106 -160848326 + B1_Mm SINE Alu 47 147 0 7 862 875 178 0 7 chr1 36347333 36347480 -160847952 - B1_Mur2 SINE Alu -2 147 2 8 862 1103 94 27 53 chr1 36347506 36347708 -160847724 - B2_Mm2 SINE B2 -2 214 15 8 862 1180 82 0 0 chr1 36347807 36347954 -160847478 + B1_Mus1 SINE Alu 2 148 0 8 862 25 0 0 28 chr1 36347954 36347970 -160847462 + AT_rich Low_complexity Low_complexity 1 16 0 8 862 315 0 0 0 chr1 36347970 36348005 -160847427 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 8 862 25 0 0 28 chr1 36348005 36348024 -160847408 + AT_rich Low_complexity Low_complexity 1 19 0 8 862 608 214 144 27 chr1 36348042 36348229 -160847203 + B3 SINE B2 2 210 -6 8 862 241 267 0 0 chr1 36348294 36348354 -160847078 + ID_B1 SINE B4 94 153 -71 8 862 180 0 0 0 chr1 36348417 36348437 -160846995 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 8 862 1110 22 0 0 chr1 36348441 36348580 -160846852 - B1_Mus2 SINE Alu 0 147 9 8 862 716 277 35 42 chr1 36348585 36348845 -160846587 + RLTR18B LTR ERVK 53 310 -306 8 862 1217 283 16 39 chr1 36348824 36349222 -160846210 + RLTR18B LTR ERVK 144 512 0 8 862 219 278 106 44 chr1 36349199 36349244 -160846188 + PB1D7 SINE Alu 1 119 0 8 862 287 191 0 60 chr1 36349244 36349311 -160846121 + ID_B1 SINE B4 162 224 0 8 862 207 0 0 0 chr1 36349410 36349433 -160845999 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 8 862 1057 89 0 58 chr1 36349433 36349588 -160845844 - B1_Mus1 SINE Alu -2 146 1 8 862 1443 58 17 0 chr1 36349588 36349762 -160845670 - B2_Mm2 SINE B2 -18 177 1 8 862 357 281 141 31 chr1 36349915 36350106 -160845326 + YREP_Mm Unknown Unknown 96 307 -1505 8 862 816 175 7 0 chr1 36349977 36350114 -160845318 - ID_B1 SINE B4 -5 219 82 8 862 430 212 47 108 chr1 36350122 36350270 -160845162 - B1F SINE Alu -9 140 2 8 862 271 284 44 22 chr1 36350329 36350419 -160845013 - MLT1G LTR MaLR -195 396 305 8 862 268 325 167 0 chr1 36350444 36350650 -160844782 - MLT1G LTR MaLR -349 206 1 8 862 914 211 43 0 chr1 36351164 36351349 -160844083 + B3 SINE B2 3 195 -21 8 862 646 233 120 65 chr1 36351444 36351484 -160843948 + B4 SINE B4 2 38 -254 8 862 2266 164 30 73 chr1 36351484 36351877 -160843555 + MTC LTR MaLR 1 377 -44 8 862 1457 84 21 0 chr1 36351877 36352068 -160843364 - B2_Mm2 SINE B2 0 195 1 8 862 2266 164 30 73 chr1 36352068 36352114 -160843318 + MTC LTR MaLR 378 421 0 8 862 646 240 112 64 chr1 36352114 36352368 -160843064 + B4 SINE B4 38 292 0 8 862 274 297 22 0 chr1 36352786 36352877 -160842555 + PB1 SINE Alu 33 125 -2 8 862 344 284 84 7 chr1 36352914 36353056 -160842376 + HAL1-3A_ME LINE L1 2284 2436 -422 8 862 448 216 49 0 chr1 36353564 36353666 -160841766 - MIRb SINE MIR -91 177 71 8 862 216 67 0 0 chr1 36356501 36356531 -160838901 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 8 862 198 0 0 0 chr1 36356604 36356626 -160838806 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 862 341 244 51 4 chr1 36358256 36358347 -160837085 + PB1D10 SINE Alu 33 125 -24 8 862 197 149 43 0 chr1 36358678 36358725 -160836707 + (TCTCTG)n Simple_repeat Simple_repeat 1 49 0 8 862 396 0 0 0 chr1 36358738 36358782 -160836650 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 862 458 254 162 0 chr1 36359480 36359543 -160835889 + ID_B1 SINE B4 5 169 -55 8 862 320 227 111 22 chr1 36359543 36359622 -160835810 + PB1D10 SINE Alu 1 88 -29 8 862 257 0 0 29 chr1 36359622 36359656 -160835776 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 8 862 182 275 0 0 chr1 36360759 36360799 -160834633 + MIR SINE MIR 114 153 -109 8 862 480 77 0 0 chr1 36361215 36361280 -160834152 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 8 862 211 297 110 0 chr1 36362018 36362109 -160833323 + MIRc SINE MIR 24 124 -144 8 862 225 0 0 0 chr1 36362148 36362173 -160833259 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 862 1225 54 7 0 chr1 36362311 36362458 -160832974 + B1_Mus1 SINE Alu 1 148 0 8 862 1564 52 5 0 chr1 36362461 36362652 -160832780 + B2_Mm1a SINE B2 2 193 0 8 862 204 178 22 22 chr1 36365162 36365208 -160830224 + CT-rich Low_complexity Low_complexity 1 46 0 8 862 209 250 94 12 chr1 36365758 36365843 -160829589 - MIR3 SINE MIR -6 202 111 8 862 378 204 204 0 chr1 36367031 36367129 -160828303 + PB1D9 SINE Alu 1 118 -2 8 862 1448 74 21 5 chr1 36367566 36367757 -160827675 - B2_Mm2 SINE B2 0 195 2 8 862 394 277 8 48 chr1 36367895 36368020 -160827412 + MIRb SINE MIR 38 157 -111 8 862 1115 129 93 60 chr1 36368483 36368698 -160826734 - URR1A DNA MER1_type 0 226 5 8 862 1573 42 11 5 chr1 36369436 36369626 -160825806 + B2_Mm2 SINE B2 1 191 -4 8 862 337 123 31 0 chr1 36370820 36370885 -160824547 + CT-rich Low_complexity Low_complexity 3 69 0 8 862 1057 83 27 14 chr1 36370908 36371054 -160824378 - B1_Mus1 SINE Alu 0 148 1 8 862 244 206 80 15 chr1 36371063 36371155 -160824277 - B1F2 SINE Alu -1 116 14 8 862 251 129 28 127 chr1 36371414 36371485 -160823947 + B1_Mur3 SINE Alu 50 113 -36 8 862 3185 144 21 26 chr1 36371500 36372071 -160823361 - RLTR20D LTR ERVK 0 568 1 8 862 466 252 0 0 chr1 36372071 36372178 -160823254 + PB1D9 SINE Alu 12 118 -2 8 862 214 130 58 0 chr1 36372435 36372504 -160822928 + (CAGGA)n Simple_repeat Simple_repeat 3 75 0 8 862 288 0 0 0 chr1 36372854 36372886 -160822546 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 8 862 924 106 30 0 chr1 36373552 36373684 -160821748 - B1_Mur4 SINE Alu -12 138 3 8 862 431 238 48 0 chr1 36377741 36377846 -160817586 - PB1 SINE Alu -4 123 14 8 862 796 145 92 0 chr1 36379432 36379563 -160815869 - B1_Mur3 SINE Alu -5 144 2 8 862 317 214 43 0 chr1 36380766 36380836 -160814596 - ID4_ SINE ID -1 82 10 8 862 441 0 0 0 chr1 36381269 36381318 -160814114 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 862 2360 69 3 0 chr1 36381920 36382238 -160813194 - ORR1A2 LTR MaLR -8 319 1 8 862 188 167 21 0 chr1 36382338 36382386 -160813046 + GA-rich Low_complexity Low_complexity 1 49 0 8 862 281 330 28 0 chr1 36382982 36383088 -160812344 + MER117 DNA MER1_type 84 192 -5 8 862 490 300 40 0 chr1 36383316 36383466 -160811966 + RSINE1 SINE B4 10 165 0 8 862 1172 58 0 0 chr1 36385160 36385298 -160810134 + B1_Mus2 SINE Alu 3 140 -7 8 862 228 35 0 0 chr1 36385298 36385327 -160810105 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 862 1087 193 28 33 chr1 36385533 36385747 -160809685 - B3 SINE B2 -3 213 1 8 862 1051 88 7 0 chr1 36386049 36386186 -160809246 + B1_Mus1 SINE Alu 1 138 -10 8 862 195 42 0 0 chr1 36386186 36386210 -160809222 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 862 457 196 72 18 chr1 36386217 36386383 -160809049 + RMER17C LTR ERVK 101 275 -135 8 862 297 140 7 19 chr1 36386497 36386556 -160808876 + PB1D10 SINE Alu 59 120 0 8 862 1102 62 7 20 chr1 36386612 36386749 -160808683 + B1_Mus1 SINE Alu 2 139 -9 8 862 183 42 0 0 chr1 36386749 36386773 -160808659 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 862 515 248 172 0 chr1 36386952 36387097 -160808335 - ID_B1 SINE B4 -52 172 3 8 862 363 232 0 28 chr1 36387393 36387464 -160807968 - ID4_ SINE ID -13 70 2 8 862 234 247 273 0 chr1 36387475 36387552 -160807880 - PB1D10 SINE Alu -10 107 10 8 862 25 0 0 0 chr1 36387560 36387585 -160807847 + AT_rich Low_complexity Low_complexity 1 25 0 8 862 348 249 259 53 chr1 36387966 36388267 -160807165 + L1MDa LINE L1 839 1201 -5432 8 862 561 275 137 47 chr1 36388828 36389571 -160805861 + L1MDa LINE L1 2328 3143 -3394 8 862 369 337 23 17 chr1 36389617 36389792 -160805640 + L1M5 LINE L1 5480 5655 -524 8 862 527 280 186 26 chr1 36390088 36390433 -160804999 + L1MD2 LINE L1 5720 6119 -240 8 862 189 0 0 0 chr1 36390442 36390463 -160804969 + (A)n Simple_repeat Simple_repeat 1 21 0 8 862 546 219 97 86 chr1 36390493 36390762 -160804670 - B4 SINE B4 -19 273 2 8 862 1276 34 0 0 chr1 36390854 36391001 -160804431 - B1_Mm SINE Alu 0 147 1 8 862 236 61 0 0 chr1 36391188 36391221 -160804211 + B3 SINE B2 1 33 -183 8 862 301 199 0 40 chr1 36391422 36391489 -160803943 - B2_Mm2 SINE B2 -107 109 47 8 862 620 147 0 0 chr1 36391536 36391631 -160803801 - B2_Mm2 SINE B2 -87 108 14 8 862 243 315 0 0 chr1 36391716 36391770 -160803662 - B1F2 SINE Alu -95 54 1 8 862 1126 69 0 0 chr1 36391928 36392072 -160803360 - B1_Mus1 SINE Alu 0 148 5 8 862 385 268 52 0 chr1 36392352 36392449 -160802983 + B1F2 SINE Alu 6 107 -42 8 862 189 0 0 0 chr1 36394611 36394632 -160800800 + (CTCTG)n Simple_repeat Simple_repeat 1 21 0 8 862 240 317 82 84 chr1 36394680 36394831 -160800601 + MIRb SINE MIR 90 244 -18 8 862 348 127 0 0 chr1 36395498 36395553 -160799879 + (GGA)n Simple_repeat Simple_repeat 1 55 0 8 862 315 309 113 0 chr1 36395601 36395698 -160799734 - ID_B1 SINE B4 -94 130 23 8 862 612 190 45 90 chr1 36395733 36395779 -160799653 + B1_Mur1 SINE Alu 1 46 -103 8 862 1070 89 101 0 chr1 36395779 36395937 -160799495 + B2_Mm2 SINE B2 3 176 -19 8 862 612 190 45 90 chr1 36395937 36396046 -160799386 + B1_Mur1 SINE Alu 47 149 0 8 862 816 212 159 4 chr1 36396324 36396587 -160798845 + MTD LTR MaLR 4 414 -5 8 862 232 312 20 70 chr1 36396611 36396711 -160798721 - MIRc SINE MIR -130 138 44 8 862 447 19 0 0 chr1 36397152 36397204 -160798228 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 862 245 338 14 0 chr1 36397535 36397606 -160797826 + ID_B1 SINE B4 105 176 -48 8 862 243 277 157 0 chr1 36397606 36397618 -160797814 + PB1 SINE Alu 24 119 -8 8 862 261 176 20 0 chr1 36397979 36398030 -160797402 + PB1D7 SINE Alu 1 52 -68 9 862 198 0 0 0 chr1 36398128 36398150 -160797282 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 9 862 532 206 17 36 chr1 36398154 36398274 -160797158 + B1_Mur1 SINE Alu 2 147 -2 9 862 450 201 186 9 chr1 36398283 36398389 -160797043 + PB1 SINE Alu 17 120 -7 9 862 442 271 176 31 chr1 36398391 36398646 -160796786 + B4A SINE B4 1 292 0 9 862 1263 34 0 0 chr1 36398726 36398872 -160796560 + B1_Mm SINE Alu 2 147 0 9 862 198 71 0 0 chr1 36398872 36398900 -160796532 + (A)n Simple_repeat Simple_repeat 1 28 0 9 862 557 301 47 37 chr1 36398901 36399115 -160796317 + ID_B1 SINE B4 3 218 -6 9 862 809 246 54 20 chr1 36399130 36399333 -160796099 + B3 SINE B2 6 215 -1 9 862 618 262 113 16 chr1 36399513 36399707 -160795725 + MTD LTR MaLR 12 224 -195 9 862 292 241 112 90 chr1 36399838 36400005 -160795427 - MIRb SINE MIR -75 201 27 9 862 480 59 0 0 chr1 36406426 36406494 -160788938 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 862 232 111 65 22 chr1 36406495 36406541 -160788891 + GA-rich Low_complexity Low_complexity 2 49 0 9 862 378 283 22 0 chr1 36406750 36406842 -160788590 + RSINE1 SINE B4 68 161 -4 9 862 1324 94 33 0 chr1 36406869 36407049 -160788383 + B2_Mm1t SINE B2 1 186 -7 9 862 511 234 94 16 chr1 36407104 36407241 -160788191 + B1_Mm SINE Alu 1 149 0 9 862 644 172 33 49 chr1 36407319 36407441 -160787991 + B1_Mur2 SINE Alu 15 134 -15 9 862 860 267 77 16 chr1 36407662 36407974 -160787458 + L1MC4a LINE L1 7251 7581 -301 9 862 456 257 19 9 chr1 36407986 36408092 -160787340 + ID_B1 SINE B4 117 223 -1 9 862 189 147 0 0 chr1 36408129 36408163 -160787269 + (TCTCCC)n Simple_repeat Simple_repeat 2 35 0 9 862 215 286 24 72 chr1 36409187 36409270 -160786162 + ID4 SINE ID 3 81 -2 9 862 186 133 0 0 chr1 36409574 36409604 -160785828 + (A)n Simple_repeat Simple_repeat 1 30 0 9 862 451 51 0 0 chr1 36409744 36409803 -160785629 + L1Md_F3 LINE L1 6504 6562 -22 9 862 270 0 0 0 chr1 36409803 36409833 -160785599 + (TA)n Simple_repeat Simple_repeat 1 30 0 9 862 1216 42 0 0 chr1 36409856 36410000 -160785432 + B1_Mus1 SINE Alu 5 148 0 9 862 383 286 41 0 chr1 36410025 36410123 -160785309 - B1F1 SINE Alu -41 108 7 9 862 329 329 52 35 chr1 36410123 36410296 -160785136 + L1MC4a LINE L1 7757 7932 -29 9 862 668 231 22 50 chr1 36411168 36411350 -160784082 + B3A SINE B2 3 179 -19 9 862 200 167 21 0 chr1 36412285 36412333 -160783099 + GA-rich Low_complexity Low_complexity 6 54 0 9 862 262 254 18 0 chr1 36412374 36412429 -160783003 + ID4 SINE ID 28 83 0 9 862 332 184 118 0 chr1 36412533 36412609 -160782823 + PB1D10 SINE Alu 31 115 -2 9 862 205 152 0 0 chr1 36412804 36412837 -160782595 + G-rich Low_complexity Low_complexity 4 36 0 9 862 589 284 7 0 chr1 36413042 36413190 -160782242 + B1F2 SINE Alu 1 149 0 9 862 381 274 53 0 chr1 36414439 36414534 -160780898 - B1_Mur2 SINE Alu -48 101 2 9 862 288 273 31 0 chr1 36415589 36415693 -160779739 - B1F1 SINE Alu 0 120 9 9 862 1373 84 10 20 chr1 36416127 36416322 -160779110 + B2_Mm2 SINE B2 2 194 -1 9 862 251 192 0 0 chr1 36416323 36416375 -160779057 + GA-rich Low_complexity Low_complexity 2 53 0 9 862 458 221 63 78 chr1 36416404 36416546 -160778886 + B1_Mur4 SINE Alu 11 150 0 9 862 880 264 65 43 chr1 36416622 36416899 -160778533 + B4A SINE B4 2 284 -8 9 862 367 304 223 22 chr1 36417191 36417460 -160777972 + L2a LINE L2 3102 3424 -2 9 862 442 297 9 26 chr1 36418460 36418574 -160776858 - PB1D10 SINE Alu 0 117 6 9 862 689 190 176 16 chr1 36418670 36418852 -160776580 - B3 SINE B2 -5 211 1 9 862 21 36 0 0 chr1 36418854 36418882 -160776550 + AT_rich Low_complexity Low_complexity 1 28 0 9 862 240 355 86 29 chr1 36418934 36419073 -160776359 - RSINE1 SINE B4 -18 147 1 9 862 616 221 43 0 chr1 36419108 36419248 -160776184 - B1_Mm SINE Alu 0 147 2 9 862 1245 54 0 0 chr1 36419628 36419775 -160775657 + B1_Mus2 SINE Alu 1 147 0 9 862 222 222 67 0 chr1 36419923 36419968 -160775464 + B1_Mur4 SINE Alu 6 53 -97 9 862 261 0 0 0 chr1 36420341 36420370 -160775062 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 862 1096 88 0 0 chr1 36420370 36420507 -160774925 - B1_Mus1 SINE Alu -10 138 2 9 862 245 268 109 40 chr1 36420746 36420847 -160774585 + MamRep605 Unknown Unknown 507 614 -262 9 862 477 207 159 18 chr1 36420924 36421037 -160774395 + ID_B1 SINE B4 93 221 -3 9 862 641 261 48 59 chr1 36421051 36421238 -160774194 + B3A SINE B2 9 193 -5 9 862 708 200 160 11 chr1 36421393 36421580 -160773852 - B3 SINE B2 -1 215 1 9 862 456 104 0 0 chr1 36421605 36421672 -160773760 + (TTA)n Simple_repeat Simple_repeat 3 69 0 9 862 219 69 0 0 chr1 36421672 36421701 -160773731 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 862 245 274 0 0 chr1 36421701 36421752 -160773680 - B3A SINE B2 -16 182 132 9 862 316 169 200 0 chr1 36421989 36422054 -160773378 - ID4 SINE ID -3 80 3 9 862 221 348 0 0 chr1 36422087 36422156 -160773276 - PB1 SINE Alu -51 76 8 9 862 248 167 273 0 chr1 36422730 36422796 -160772636 - B1F1 SINE Alu 0 149 66 9 862 424 256 0 22 chr1 36422869 36422961 -160772471 - B3A SINE B2 -108 90 1 9 862 405 225 0 12 chr1 36422961 36423041 -160772391 - B1F SINE Alu -70 79 1 9 862 21 36 0 0 chr1 36423064 36423092 -160772340 + AT_rich Low_complexity Low_complexity 1 28 0 9 862 872 191 40 50 chr1 36423102 36423301 -160772131 + B3A SINE B2 2 198 0 9 862 598 151 85 0 chr1 36423586 36423692 -160771740 + B1_Mur3 SINE Alu 34 148 -1 9 862 279 196 0 0 chr1 36423741 36423797 -160771635 + B1_Mur1 SINE Alu 76 131 -18 9 862 305 220 17 0 chr1 36423807 36423866 -160771566 + ID_B1 SINE B4 92 151 -73 9 862 252 0 0 0 chr1 36423897 36423925 -160771507 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 862 903 141 14 0 chr1 36425094 36425236 -160770196 + B1_Mur2 SINE Alu 6 149 0 9 862 204 255 28 28 chr1 36425724 36425833 -160769599 + (CCCCG)n Simple_repeat Simple_repeat 3 111 0 9 862 470 188 0 68 chr1 36426308 36426411 -160769021 + PB1D7 SINE Alu 24 119 -1 9 862 4794 61 8 0 chr1 36426598 36427202 -160768230 + L1_Mm LINE L1 5190 5798 -85 9 862 374 206 0 27 chr1 36427425 36427500 -160767932 - ID_B1 SINE B4 -12 212 140 9 862 218 132 36 36 chr1 36427500 36427555 -160767877 + (GTTTG)n Simple_repeat Simple_repeat 2 56 0 9 862 576 117 53 42 chr1 36427559 36427682 -160767750 - B1_Mur3 SINE Alu 0 149 31 9 862 329 258 19 170 chr1 36427608 36427767 -160767665 - ID_B1 SINE B4 -11 213 79 9 862 2248 245 112 7 chr1 36427762 36428371 -160767061 + RCHARR1 DNA MER1_type 8 680 -294 9 862 447 200 9 95 chr1 36428369 36428474 -160766958 + ID_B1 SINE B4 129 224 0 9 862 1390 79 26 0 chr1 36428531 36428720 -160766712 + B2_Mm2 SINE B2 2 195 0 9 862 2534 172 20 5 chr1 36429559 36430003 -160765429 - Lx5 LINE L1 -283 6767 6317 9 862 1699 157 23 53 chr1 36430003 36430306 -160765126 + Lx5 LINE L1 6741 7034 -16 9 862 225 0 0 0 chr1 36430306 36430331 -160765101 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 9 862 584 234 22 7 chr1 36431158 36431296 -160764136 + B1F1 SINE Alu 2 141 -8 9 862 577 230 92 69 chr1 36432347 36432520 -160762912 - MER89 LTR ERV1 -111 448 272 9 862 432 222 20 0 chr1 36432516 36432615 -160762817 + RSINE1 SINE B4 44 144 -21 9 862 513 304 126 22 chr1 36432676 36432898 -160762534 - MER89 LTR ERV1 -314 245 1 9 862 498 96 0 0 chr1 36433399 36433472 -160761960 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 862 409 33 0 0 chr1 36433698 36433759 -160761673 - L1_Mus3 LINE L1 0 6638 6578 9 862 1244 41 0 13 chr1 36433836 36433985 -160761447 - B1_Mus1 SINE Alu -1 147 1 9 862 1614 201 132 5 chr1 36434041 36434411 -160761021 - MTD LTR MaLR 0 419 3 9 862 1144 42 74 62 chr1 36434832 36435008 -160760424 + B2_Mm2 SINE B2 2 179 -16 9 862 209 305 107 25 chr1 36436849 36436970 -160758462 + MIRc SINE MIR 92 222 -46 9 862 536 216 8 8 chr1 36437007 36437124 -160758308 + ID_B1 SINE B4 92 208 -16 9 862 705 195 0 0 chr1 36437613 36437731 -160757701 - B1F SINE Alu -31 118 1 9 862 22 80 0 0 chr1 36437741 36437791 -160757641 + AT_rich Low_complexity Low_complexity 1 50 0 9 862 228 111 0 0 chr1 36437796 36437832 -160757600 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 862 213 358 24 12 chr1 36437847 36437929 -160757503 - ID SINE ID -141 83 1 9 862 22 35 0 0 chr1 36437932 36437961 -160757471 + AT_rich Low_complexity Low_complexity 1 29 0 9 107 450 114 0 0 chr1 36437964 36438034 -160757398 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 863 311 331 66 8 chr1 36438049 36438171 -160757261 - RSINE1 SINE B4 -34 131 3 9 863 589 152 10 20 chr1 36438363 36438565 -160756867 + (TG)n Simple_repeat Simple_repeat 1 200 0 9 863 247 257 53 26 chr1 36439124 36439200 -160756232 - ORR1E LTR MaLR -11 348 271 9 863 509 197 113 8 chr1 36439447 36439580 -160755852 + B1_Mur2 SINE Alu 3 149 0 9 863 1142 61 0 26 chr1 36439960 36440111 -160755321 - B1_Mus2 SINE Alu 0 147 1 9 863 207 0 0 0 chr1 36440233 36440256 -160755176 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 9 863 396 0 0 0 chr1 36440288 36440332 -160755100 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 863 2454 132 70 15 chr1 36440401 36440800 -160754632 - MTC LTR MaLR 0 421 1 1 863 534 31 0 0 chr1 36440829 36440893 -160754539 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 863 665 356 48 30 chr1 36440893 36441293 -160754139 - Lx8 LINE L1 -145 7328 6922 1 863 312 167 0 18 chr1 36441325 36441380 -160754052 - ID_B1 SINE B4 0 224 171 1 863 264 266 113 31 chr1 36441381 36441575 -160753857 - L1MA5A LINE L1 -123 6174 5965 1 863 192 125 0 0 chr1 36441856 36441888 -160753544 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 863 812 174 0 8 chr1 36442454 36442587 -160752845 - B1_Mus1 SINE Alu -15 133 2 1 863 630 99 0 0 chr1 36442681 36442772 -160752660 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 863 543 131 7 31 chr1 36443047 36443160 -160752272 + B1F2 SINE Alu 40 149 0 1 863 374 250 31 20 chr1 36443193 36443291 -160752141 + PB1D7 SINE Alu 13 111 -9 1 863 463 202 19 39 chr1 36443419 36443522 -160751910 + B1F1 SINE Alu 48 148 -1 1 863 928 241 11 11 chr1 36443525 36443714 -160751718 + B3 SINE B2 9 197 -19 1 863 2029 189 84 17 chr1 36444359 36444762 -160750670 + Lx5 LINE L1 6621 7050 0 1 863 266 176 0 38 chr1 36444766 36444819 -160750613 + B3A SINE B2 27 77 -121 1 863 349 257 119 46 chr1 36444825 36444976 -160750456 - RSINE1 SINE B4 -2 163 2 1 863 579 302 94 0 chr1 36445030 36445222 -160750210 + B3 SINE B2 1 210 -6 1 863 448 259 37 37 chr1 36446279 36446443 -160748989 + RSINE1 SINE B4 2 165 0 1 863 1579 31 0 5 chr1 36446791 36446987 -160748445 - B2_Mm2 SINE B2 0 195 1 1 863 288 0 0 0 chr1 36447563 36447595 -160747837 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 863 227 297 11 21 chr1 36448108 36448138 -160747294 + polypurine Low_complexity Low_complexity 4 33 0 1 863 252 59 0 0 chr1 36448138 36448172 -160747260 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 863 274 164 24 37 chr1 36448172 36448262 -160747170 + (CAGAGA)n Simple_repeat Simple_repeat 1 88 0 1 863 426 20 0 0 chr1 36448266 36448317 -160747115 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 863 462 259 18 18 chr1 36448322 36448432 -160747000 + PB1D10 SINE Alu 5 114 -3 1 863 828 84 8 15 chr1 36448432 36448565 -160746867 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 1 863 238 155 33 49 chr1 36448566 36448627 -160746805 + GA-rich Low_complexity Low_complexity 1 60 0 1 863 309 125 0 0 chr1 36448790 36448846 -160746586 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 863 492 18 0 0 chr1 36449363 36449420 -160746012 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 863 427 271 0 0 chr1 36449466 36449562 -160745870 - PB1D10 SINE Alu -4 113 18 1 863 292 308 100 0 chr1 36449843 36449973 -160745459 - B4A SINE B4 -149 143 1 1 863 222 150 0 0 chr1 36450025 36450065 -160745367 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 1 863 385 305 149 19 chr1 36450096 36450250 -160745182 + MER5A DNA MER1_type 16 189 0 1 863 846 253 108 18 chr1 36450341 36450619 -160744813 - L1MB8 LINE L1 -5 6173 5871 1 863 189 94 0 0 chr1 36450649 36450681 -160744751 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 863 1174 61 0 0 chr1 36450682 36450829 -160744603 - B1_Mus1 SINE Alu 0 148 2 1 863 537 318 173 3 chr1 36451239 36451539 -160743893 - L1M5 LINE L1 -515 5725 5375 1 863 707 276 8 91 chr1 36451691 36451793 -160743639 - ID_B1 SINE B4 -1 223 132 1 863 1350 67 0 0 chr1 36451793 36451971 -160743461 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 1 863 621 0 0 0 chr1 36451972 36452041 -160743391 + (TTC)n Simple_repeat Simple_repeat 3 71 0 1 863 1069 86 79 11 chr1 36452042 36452219 -160743213 - L1Md_F2 LINE L1 -15 6567 6379 1 863 707 276 8 91 chr1 36452219 36452355 -160743077 - ID_B1 SINE B4 -93 131 1 1 863 239 167 83 0 chr1 36452380 36452428 -160743004 - PB1D10 SINE Alu -38 79 28 1 863 376 287 36 27 chr1 36452474 36452585 -160742847 - RSINE1 SINE B4 -29 136 25 1 863 421 278 62 34 chr1 36452594 36452773 -160742659 - L1M5 LINE L1 -1155 4991 4808 1 863 195 100 0 0 chr1 36452802 36452832 -160742600 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1 863 685 134 0 32 chr1 36453008 36453131 -160742301 - PB1D9 SINE Alu 0 120 2 1 863 346 329 27 42 chr1 36453136 36453332 -160742100 - L1M4 LINE L1 -984 5162 4970 1 863 1465 56 0 25 chr1 36453512 36453712 -160741720 - B2_Mm2 SINE B2 0 195 1 1 863 234 209 0 65 chr1 36453721 36453813 -160741619 - Lx4B LINE L1 -3 7055 6970 1 863 280 307 127 68 chr1 36454821 36455191 -160740241 - L1ME3A LINE L1 0 6173 5782 1 863 542 228 54 23 chr1 36455254 36455384 -160740048 + B1_Mur2 SINE Alu 1 134 -15 1 863 594 103 0 0 chr1 36455391 36455478 -160739954 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 863 244 290 184 36 chr1 36455589 36455756 -160739676 + B4 SINE B4 2 193 -99 1 863 980 198 15 25 chr1 36455756 36455953 -160739479 + B3 SINE B2 1 195 -21 1 863 248 292 29 128 chr1 36455962 36456064 -160739368 + B4A SINE B4 186 277 -15 1 863 468 0 0 0 chr1 36456118 36456170 -160739262 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 863 651 285 68 40 chr1 36456173 36456425 -160739007 + MER2 DNA MER2_type 87 345 0 1 863 343 289 67 34 chr1 36456427 36456635 -160738797 - L1ME3A LINE L1 -661 5783 5569 1 863 567 297 0 31 chr1 36456984 36457144 -160738288 + RSINE1 SINE B4 8 162 -3 1 863 329 235 0 184 chr1 36457183 36457308 -160738124 + MT2B LTR ERVL 155 256 -345 1 863 823 135 28 21 chr1 36457208 36457352 -160738080 + B1_Mur4 SINE Alu 6 150 0 1 863 454 369 20 28 chr1 36457431 36457679 -160737753 - MLT1C LTR MaLR -188 279 34 1 863 184 373 17 0 chr1 36458441 36458500 -160736932 - L2b LINE L2 -37 3338 3279 1 863 513 0 0 0 chr1 36461889 36461946 -160733486 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 863 245 329 0 0 chr1 36462029 36462102 -160733330 - Lx8 LINE L1 -368 7105 7033 1 863 324 230 128 56 chr1 36462188 36462296 -160733136 + B1F1 SINE Alu 13 127 -21 1 863 2012 153 12 3 chr1 36462447 36462782 -160732650 - ORR1A1 LTR MaLR -8 338 1 1 863 643 284 103 17 chr1 36462782 36463015 -160732417 + MER2 DNA MER2_type 93 345 0 1 863 275 305 27 54 chr1 36464088 36464199 -160731233 + PB1 SINE Alu 1 108 -19 1 863 640 269 22 85 chr1 36464128 36464419 -160731013 + B4A SINE B4 8 291 -1 1 863 180 291 0 18 chr1 36465098 36465154 -160730278 + MIR3 SINE MIR 5 59 -149 1 863 1999 162 98 13 chr1 36466403 36466791 -160728641 - MTC LTR MaLR 0 421 1 1 863 736 271 0 27 chr1 36467002 36467188 -160728244 + B3 SINE B2 8 188 -28 1 863 551 237 22 22 chr1 36470135 36470273 -160725159 - ID_B1 SINE B4 -9 215 78 1 863 189 0 0 0 chr1 36470315 36470336 -160725096 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 863 469 296 144 6 chr1 36470336 36470496 -160724936 - B4 SINE B4 -67 225 44 1 863 1135 246 130 6 chr1 36470504 36470835 -160724597 + MTEa LTR MaLR 1 372 -7 1 863 352 288 27 9 chr1 36471023 36471135 -160724297 + PB1D10 SINE Alu 2 115 -2 1 863 405 257 12 162 chr1 36471135 36471302 -160724130 + ID_B1 SINE B4 2 143 -81 1 863 332 184 152 54 chr1 36471245 36471322 -160724110 + PB1D10 SINE Alu 5 92 -25 1 863 432 0 0 0 chr1 36471322 36471370 -160724062 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 863 360 0 0 0 chr1 36471370 36471409 -160724023 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 863 332 184 152 54 chr1 36471409 36471422 -160724010 + PB1D10 SINE Alu 93 104 -13 1 863 505 333 0 7 chr1 36471948 36472093 -160723339 - ID_B1 SINE B4 0 224 81 1 863 207 0 0 0 chr1 36473478 36473501 -160721931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 863 2384 72 0 0 chr1 36475698 36476017 -160719415 - ORR1A2 LTR MaLR -8 319 1 1 863 222 37 0 0 chr1 36476067 36476094 -160719338 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 863 784 174 8 0 chr1 36479272 36479404 -160716028 - B1_Mus2 SINE Alu 0 147 15 1 863 307 287 78 85 chr1 36479278 36479419 -160716013 - B4 SINE B4 -72 220 81 1 863 426 298 76 8 chr1 36482219 36482351 -160713081 + B1F2 SINE Alu 1 141 -8 1 863 720 241 81 0 chr1 36482497 36482671 -160712761 + B3A SINE B2 8 195 -3 1 863 400 317 0 0 chr1 36482981 36483085 -160712347 - PB1D10 SINE Alu -11 106 3 1 863 292 321 18 27 chr1 36483107 36483219 -160712213 - PB1D10 SINE Alu -2 115 5 1 863 399 193 45 0 chr1 36483276 36483364 -160712068 - PB1D9 SINE Alu -5 115 24 1 863 607 187 67 7 chr1 36483640 36483775 -160711657 + B1F SINE Alu 2 144 -5 1 863 221 222 48 0 chr1 36483842 36483905 -160711527 - B1F SINE Alu -2 147 82 1 863 527 176 49 0 chr1 36483919 36484021 -160711411 - B1_Mm SINE Alu 0 147 41 1 863 312 206 109 40 chr1 36484161 36484262 -160711170 + PB1D10 SINE Alu 2 109 -8 1 863 205 219 61 30 chr1 36485659 36485725 -160709707 + L2a LINE L2 3347 3414 -12 1 863 204 40 0 0 chr1 36486450 36486475 -160708957 + (A)n Simple_repeat Simple_repeat 1 25 0 1 863 531 254 137 0 chr1 36487854 36488051 -160707381 - ID_B1 SINE B4 0 224 1 1 863 285 29 0 0 chr1 36488219 36488253 -160707179 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 863 1026 38 0 0 chr1 36488253 36488385 -160707047 - B1_Mus2 SINE Alu -9 138 7 1 863 484 185 45 123 chr1 36488385 36488407 -160707025 - B4A SINE B4 -74 218 77 1 863 417 39 0 0 chr1 36488521 36488572 -160706860 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 863 349 235 12 12 chr1 36488595 36488677 -160706755 + ID4 SINE ID 1 82 -1 1 863 1084 83 7 0 chr1 36488686 36488831 -160706601 + B1_Mm SINE Alu 2 147 0 1 863 189 0 0 0 chr1 36488831 36488852 -160706580 + (CAAAAA)n Simple_repeat Simple_repeat 6 26 0 1 863 26 50 0 0 chr1 36489384 36489424 -160706008 + AT_rich Low_complexity Low_complexity 1 40 0 1 863 492 211 96 0 chr1 36489846 36489950 -160705482 - RSINE1 SINE B4 -40 125 12 1 863 743 165 15 0 chr1 36490312 36490445 -160704987 + RSINE1 SINE B4 2 136 -29 1 863 234 227 60 30 chr1 36490603 36490703 -160704729 + L1MC4 LINE L1 7798 7900 -142 1 863 450 274 0 25 chr1 36490759 36490876 -160704556 + PB1 SINE Alu 5 105 -42 1 863 315 193 80 57 chr1 36491494 36491582 -160703850 + MT2B LTR ERVL 175 264 -337 1 863 713 108 18 0 chr1 36491506 36491617 -160703815 + B1_Mur3 SINE Alu 37 149 0 1 863 333 228 0 0 chr1 36491885 36491964 -160703468 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 1 863 317 273 92 46 chr1 36492404 36492577 -160702855 - L1MB7 LINE L1 -113 6071 5891 1 863 324 263 267 5 chr1 36492608 36492803 -160702629 - L1MB7 LINE L1 -410 5764 5519 1 863 537 223 70 90 chr1 36492828 36493104 -160702328 - L1MB7 LINE L1 -719 5465 5189 1 863 279 203 70 28 chr1 36493104 36493175 -160702257 - ID4_ SINE ID -8 75 2 1 863 537 219 64 112 chr1 36493175 36493220 -160702212 - L1MB7 LINE L1 -958 5188 5150 1 863 878 177 0 0 chr1 36493233 36493380 -160702052 + B1_Mus2 SINE Alu 1 147 0 1 863 743 246 77 0 chr1 36493394 36493589 -160701843 - B3 SINE B2 -6 210 1 1 863 253 286 0 0 chr1 36493599 36493669 -160701763 - L1MB7 LINE L1 -992 5154 5085 1 863 412 262 19 0 chr1 36494968 36495071 -160700361 + PB1D7 SINE Alu 1 105 -15 1 863 496 106 21 0 chr1 36495371 36495465 -160699967 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 863 1338 76 43 0 chr1 36496735 36496919 -160698513 + B2_Mm2 SINE B2 3 194 -1 1 863 1122 122 11 11 chr1 36497127 36497284 -160698148 + B2_Mm2 SINE B2 2 159 -36 1 863 192 77 0 0 chr1 36497284 36497310 -160698122 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 863 1122 122 11 11 chr1 36497310 36497342 -160698090 + B2_Mm2 SINE B2 160 191 -4 1 863 25 0 0 0 chr1 36497386 36497411 -160698021 + AT_rich Low_complexity Low_complexity 1 25 0 1 863 1116 48 7 0 chr1 36497662 36497807 -160697625 + B1_Mus2 SINE Alu 2 147 0 1 863 189 94 0 0 chr1 36497807 36497839 -160697593 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 1 863 465 103 0 0 chr1 36497836 36497904 -160697528 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1 863 714 190 14 14 chr1 36498495 36498639 -160696793 + B1_Mur4 SINE Alu 6 149 -1 1 863 186 133 0 0 chr1 36498689 36498719 -160696713 + (GAAAA)n Simple_repeat Simple_repeat 3 32 0 1 863 216 294 29 0 chr1 36498721 36498789 -160696643 + MER5B DNA MER1_type 53 122 -56 1 863 310 320 10 58 chr1 36499605 36499708 -160695724 - PB1 SINE Alu -27 100 3 1 863 292 240 52 4 chr1 36499714 36499801 -160695631 + B1F SINE Alu 42 129 -20 1 863 841 152 256 6 chr1 36500041 36500213 -160695219 - B3 SINE B2 0 216 2 1 863 1242 43 0 0 chr1 36500859 36501000 -160694432 + B1_Mus1 SINE Alu 2 142 -6 2 863 279 0 0 0 chr1 36501002 36501033 -160694399 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 863 21 0 0 0 chr1 36501033 36501054 -160694378 + AT_rich Low_complexity Low_complexity 1 21 0 4 863 303 204 0 0 chr1 36502542 36502596 -160692836 + PB1D10 SINE Alu 25 78 -39 5 863 301 270 99 22 chr1 36502596 36502633 -160692799 + ID_B1 SINE B4 106 203 -21 6 863 775 197 21 0 chr1 36502651 36502793 -160692639 + B1_Mur4 SINE Alu 5 149 -1 7 863 2451 102 2 77 chr1 36502977 36503393 -160692039 + RLTR11B LTR ERVK 69 453 0 8 863 379 275 12 0 chr1 36504192 36504272 -160691160 - ID4 SINE ID -1 82 2 9 863 548 205 98 0 chr1 36504381 36504503 -160690929 - B1F1 SINE Alu -15 134 1 1 863 288 0 0 0 chr1 36504740 36504772 -160690660 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 863 387 0 0 0 chr1 36504875 36504918 -160690514 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 863 416 200 0 0 chr1 36504918 36504983 -160690449 - ID4_ SINE ID -13 70 6 1 863 320 239 30 0 chr1 36504979 36505046 -160690386 - B1_Mur4 SINE Alu -80 70 2 1 863 335 167 0 236 chr1 36505046 36505152 -160690280 + B1_Mus2 SINE Alu 36 115 -32 1 863 354 80 0 0 chr1 36505156 36505206 -160690226 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 863 280 292 94 0 chr1 36505231 36505327 -160690105 - PB1D10 SINE Alu -12 105 1 1 863 401 236 9 78 chr1 36505360 36505475 -160689957 - PB1D10 SINE Alu -8 109 3 1 863 385 227 220 57 chr1 36505479 36505497 -160689935 - B2_Mm2 SINE B2 -9 186 169 1 863 1361 75 0 26 chr1 36505497 36505689 -160689743 + B2_Mm2 SINE B2 2 188 -7 2 863 436 227 220 57 chr1 36505689 36505829 -160689603 - B3 SINE B2 -27 168 2 1 863 207 114 0 0 chr1 36505829 36505864 -160689568 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 863 3717 141 144 81 chr1 36506040 36506872 -160688560 + RMER19B LTR ERVK 1 885 -17 2 863 1355 73 17 6 chr1 36506872 36507051 -160688381 + B2_Mm2 SINE B2 1 181 -14 2 863 944 306 75 57 chr1 36507159 36507381 -160688051 - Lx8 LINE L1 -3 7470 7219 2 863 2492 186 39 58 chr1 36507381 36507952 -160687480 - RLTR31_Mm LTR ERVK 0 561 2 2 863 944 306 72 56 chr1 36507952 36508408 -160687024 - Lx8 LINE L1 -255 7218 6759 2 863 1348 260 73 85 chr1 36508481 36508961 -160686471 + RMER19C LTR ERVK 138 611 0 2 863 262 333 0 0 chr1 36508982 36509060 -160686372 - ID_B1 SINE B4 -71 153 76 2 863 387 0 0 0 chr1 36509198 36509241 -160686191 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 863 295 266 117 18 chr1 36509357 36509468 -160685964 + MT2B LTR ERVL 157 278 -323 2 863 595 180 163 8 chr1 36509371 36509494 -160685938 + B1F2 SINE Alu 8 149 0 3 863 183 80 0 0 chr1 36509555 36509580 -160685852 + (CATA)n Simple_repeat Simple_repeat 4 28 0 3 863 498 33 0 0 chr1 36509615 36509675 -160685757 + (GGGAGA)n Simple_repeat Simple_repeat 2 61 0 3 863 456 19 0 0 chr1 36509712 36509765 -160685667 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 863 243 149 128 0 chr1 36509770 36509817 -160685615 - B1F1 SINE Alu -51 98 46 3 863 254 29 29 0 chr1 36509854 36509889 -160685543 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 863 730 90 216 0 chr1 36509889 36510000 -160685432 - B1_Mus1 SINE Alu -13 135 1 3 863 232 293 136 68 chr1 36510173 36510305 -160685127 + MIR SINE MIR 37 177 -91 3 863 663 213 73 0 chr1 36510395 36510531 -160684901 - B1F2 SINE Alu -1 148 3 3 863 354 98 0 0 chr1 36510587 36510638 -160684794 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 863 419 292 38 0 chr1 36510674 36510780 -160684652 - PB1D10 SINE Alu -1 116 7 4 863 556 260 45 8 chr1 36510821 36510840 -160684592 - RSINE1 SINE B4 -21 144 123 4 863 225 0 0 0 chr1 36510840 36510865 -160684567 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 863 556 260 45 8 chr1 36510865 36510977 -160684455 - RSINE1 SINE B4 -43 122 8 4 863 600 288 47 69 chr1 36511131 36511392 -160684040 - L2 LINE L2 -515 2904 2648 4 863 885 229 26 10 chr1 36511392 36511586 -160683846 - B3A SINE B2 0 198 2 4 863 600 288 47 69 chr1 36511586 36511600 -160683832 - L2 LINE L2 -772 2647 2635 4 863 328 275 25 0 chr1 36511629 36511709 -160683723 - ID4_ SINE ID -1 82 1 4 863 539 216 39 31 chr1 36511762 36511891 -160683541 - B1F SINE Alu -17 132 3 4 863 568 289 15 7 chr1 36511929 36512065 -160683367 + RSINE1 SINE B4 29 165 0 4 863 522 217 0 0 chr1 36512071 36512191 -160683241 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 863 641 211 144 7 chr1 36512195 36512348 -160683084 + B3 SINE B2 38 211 -5 4 863 371 276 103 19 chr1 36512373 36512480 -160682952 + B1F SINE Alu 3 118 -31 5 863 298 319 63 14 chr1 36512883 36513026 -160682406 - L2 LINE L2 -780 2639 2490 4 863 391 262 123 116 chr1 36513026 36513164 -160682268 + B1F1 SINE Alu 1 139 -10 5 863 204 125 0 0 chr1 36513164 36513196 -160682236 + (ATG)n Simple_repeat Simple_repeat 3 34 0 5 863 915 258 57 27 chr1 36513197 36513460 -160681972 + B4A SINE B4 3 273 -19 5 863 227 0 93 0 chr1 36513495 36513538 -160681894 + (CATA)n Simple_repeat Simple_repeat 4 50 0 5 863 442 239 181 39 chr1 36513809 36514056 -160681376 - ORR1E LTR MaLR -4 375 64 5 863 753 191 28 7 chr1 36514072 36514214 -160681218 + B1_Mur2 SINE Alu 3 147 -2 5 863 889 279 154 78 chr1 36514342 36514765 -160680667 + MLT1F LTR MaLR 94 548 0 5 863 390 42 0 0 chr1 36514795 36514843 -160680589 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 863 775 329 10 47 chr1 36515036 36515333 -160680099 - RMER15 LTR ERVL -15 560 275 5 863 464 97 279 10 chr1 36515437 36515541 -160679891 - B2_Mm2 SINE B2 -17 178 47 6 863 1185 107 11 11 chr1 36515591 36515770 -160679662 - B2_Mm1t SINE B2 -14 179 1 6 863 2116 107 5 16 chr1 36516004 36516359 -160679073 + ORR1A2 LTR MaLR 1 338 -8 6 863 651 242 0 31 chr1 36516363 36516491 -160678941 + RSINE1 SINE B4 38 161 -4 6 863 334 301 128 73 chr1 36516489 36516526 -160678906 + B4 SINE B4 42 193 -99 6 863 695 162 60 0 chr1 36516526 36516661 -160678771 + B1F1 SINE Alu 2 147 -2 6 863 330 26 0 0 chr1 36516877 36516916 -160678516 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 863 244 346 44 66 chr1 36517096 36517232 -160678200 - MLT1A LTR MaLR -240 134 2 6 863 2271 146 75 8 chr1 36517521 36517908 -160677524 - MTC LTR MaLR -8 413 1 6 863 812 186 0 0 chr1 36518042 36518171 -160677261 + B1_Mus1 SINE Alu 1 129 -19 6 863 1108 204 10 5 chr1 36518278 36518485 -160676947 + B3 SINE B2 2 209 -7 7 863 672 253 48 0 chr1 36518508 36518677 -160676755 + B3A SINE B2 2 179 -19 7 863 312 111 0 0 chr1 36518677 36518731 -160676701 + (CAGAGA)n Simple_repeat Simple_repeat 6 59 0 7 863 672 253 48 0 chr1 36518731 36518747 -160676685 + B3A SINE B2 180 195 -3 7 863 182 259 195 71 chr1 36519370 36519524 -160675908 + L3 LINE CR1 856 1028 -3461 7 863 698 186 9 23 chr1 36519678 36520038 -160675394 + (CA)n Simple_repeat Simple_repeat 1 354 0 7 863 688 223 168 6 chr1 36520072 36520239 -160675193 - B3A SINE B2 -4 194 1 7 863 3123 140 80 7 chr1 36520245 36520805 -160674627 - RMER1B Other Other 0 1066 466 7 863 1232 34 0 13 chr1 36520817 36520966 -160674466 - B1_Mm SINE Alu 0 147 1 7 863 462 268 22 66 chr1 36521000 36521136 -160674296 - B1_Mur1 SINE Alu -19 130 1 7 863 1665 266 112 75 chr1 36521136 36522007 -160673425 + RMER17B LTR ERVK 24 926 -32 7 863 362 279 1 12 chr1 36522291 36522380 -160673052 - ID4_ SINE ID -60 92 4 8 863 289 246 18 0 chr1 36522812 36522869 -160672563 + ID4 SINE ID 2 59 -24 8 863 511 214 9 26 chr1 36522886 36523001 -160672431 + PB1D10 SINE Alu 5 117 0 8 863 250 329 0 28 chr1 36523070 36523142 -160672290 + ID2 SINE ID 2 71 -12 8 863 229 232 0 18 chr1 36523399 36523438 -160671994 + polypyrimidine Low_complexity Low_complexity 21 59 0 8 863 585 28 0 0 chr1 36523443 36523514 -160671918 + (TTC)n Simple_repeat Simple_repeat 2 72 0 8 863 1198 55 0 20 chr1 36523514 36523656 -160671776 - B1_Mus2 SINE Alu -6 141 2 8 863 229 232 0 18 chr1 36523656 36523673 -160671759 + polypyrimidine Low_complexity Low_complexity 4 20 0 8 863 1670 236 95 55 chr1 36523946 36524525 -160670907 + Lx8 LINE L1 6729 7330 -143 8 863 369 0 0 0 chr1 36525664 36525705 -160669727 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 863 920 185 27 70 chr1 36526006 36526192 -160669240 - B3A SINE B2 -19 179 2 9 863 405 0 0 0 chr1 36526622 36526667 -160668765 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 863 683 255 14 0 chr1 36527390 36527535 -160667897 + ID_B1 SINE B4 78 224 0 9 863 270 115 0 0 chr1 36527535 36527587 -160667845 + (A)n Simple_repeat Simple_repeat 1 52 0 9 863 295 199 32 86 chr1 36528377 36528564 -160666868 + (CGGGG)n Simple_repeat Simple_repeat 3 179 0 9 863 225 282 189 9 chr1 36532422 36532533 -160662899 + L2b LINE L2 3245 3375 0 9 863 371 313 203 38 chr1 36532561 36532930 -160662502 + L2a LINE L2 2997 3426 0 9 863 369 0 0 0 chr1 36533054 36533095 -160662337 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 863 186 294 86 68 chr1 36534115 36534232 -160661200 - L2c LINE L2 -3 3384 3266 9 863 247 233 165 11 chr1 36534563 36534654 -160660778 - RSINE1 SINE B4 0 165 61 9 863 581 255 50 0 chr1 36534684 36534825 -160660607 - B1F SINE Alu 0 149 2 1 863 415 313 41 47 chr1 36534825 36534855 -160660577 - ID_B1 SINE B4 0 224 55 1 863 204 111 0 0 chr1 36537192 36537228 -160658204 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 863 226 356 29 9 chr1 36537494 36537599 -160657833 + MIRb SINE MIR 160 266 -2 1 863 617 267 14 109 chr1 36537763 36537973 -160657459 + B3A SINE B2 9 198 0 1 863 189 107 0 0 chr1 36538150 36538178 -160657254 + (CGTG)n Simple_repeat Simple_repeat 4 31 0 1 863 510 263 39 7 chr1 36538187 36538340 -160657092 - RSINE1 SINE B4 0 165 8 1 863 288 288 0 0 chr1 36538355 36538414 -160657018 - ID4 SINE ID -21 62 4 1 863 430 269 92 56 chr1 36538691 36538833 -160656599 - B1F SINE Alu -1 148 2 1 863 425 245 27 36 chr1 36538848 36538958 -160656474 + PB1D10 SINE Alu 8 116 -1 1 863 567 197 73 57 chr1 36539072 36539196 -160656236 + RSINE1 SINE B4 2 127 -38 1 863 21 0 0 0 chr1 36539249 36539270 -160656162 + AT_rich Low_complexity Low_complexity 1 21 0 1 863 366 164 68 14 chr1 36539458 36539532 -160655900 + PB1D10 SINE Alu 8 85 -32 1 863 283 341 30 37 chr1 36539536 36539670 -160655762 - RSINE1 SINE B4 -31 134 2 1 863 325 329 70 14 chr1 36539671 36539813 -160655619 - HAL1-3A_ME LINE L1 -420 2438 2289 1 863 810 181 43 0 chr1 36539813 36539951 -160655481 - B1_Mur4 SINE Alu -5 145 2 1 863 355 253 21 32 chr1 36539981 36540075 -160655357 - PB1D10 SINE Alu -20 97 5 1 863 406 218 200 55 chr1 36540085 36540250 -160655182 - L1MA8 LINE L1 -55 6236 6048 1 863 360 0 0 0 chr1 36540494 36540534 -160654898 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 863 864 129 0 0 chr1 36541465 36541635 -160653797 + (TC)n Simple_repeat Simple_repeat 1 170 0 1 863 314 281 35 21 chr1 36541793 36541935 -160653497 - L1M5 LINE L1 -2324 3822 3679 1 863 379 314 49 77 chr1 36542203 36542386 -160653046 + L3 LINE CR1 3223 3400 -1089 1 863 313 235 26 0 chr1 36542728 36542843 -160652589 + (TATG)n Simple_repeat Simple_repeat 2 119 0 1 863 766 270 93 5 chr1 36542888 36543093 -160652339 + ID_B1 SINE B4 1 223 -1 1 863 1539 198 104 21 chr1 36543132 36543518 -160651914 + MTC LTR MaLR 4 421 0 1 863 255 188 104 0 chr1 36543518 36543564 -160651868 + ID_B1 SINE B4 168 218 -6 1 863 616 252 13 39 chr1 36544137 36544290 -160651142 - RSINE1 SINE B4 -15 150 2 1 863 195 42 0 0 chr1 36544533 36544557 -160650875 + (CATA)n Simple_repeat Simple_repeat 4 27 0 1 863 453 236 151 0 chr1 36544622 36544728 -160650704 - RSINE1 SINE B4 -41 124 3 1 863 849 150 34 51 chr1 36544893 36545069 -160650363 - B2_Mm2 SINE B2 -19 176 4 1 863 862 222 17 94 chr1 36545564 36545798 -160649634 + B3 SINE B2 1 216 0 1 863 1248 48 7 0 chr1 36545798 36545944 -160649488 + B1_Mus2 SINE Alu 1 147 0 1 863 713 139 147 0 chr1 36545992 36546121 -160649311 + B1_Mur3 SINE Alu 1 148 -1 1 863 1424 65 37 5 chr1 36546167 36546354 -160649078 - B2_Mm2 SINE B2 -2 193 1 1 863 540 224 9 9 chr1 36546356 36546464 -160648968 + PB1D9 SINE Alu 12 119 -1 1 863 410 214 37 46 chr1 36546985 36547093 -160648339 - PB1D9 SINE Alu 0 120 14 1 863 337 258 182 0 chr1 36546988 36547120 -160648312 - B4A SINE B4 -68 224 69 1 863 623 276 0 0 chr1 36547339 36547466 -160647966 - B1F SINE Alu -22 127 1 1 863 247 253 135 38 chr1 36547566 36547751 -160647681 - L1M5 LINE L1 -389 5735 5533 1 863 389 239 43 0 chr1 36547941 36548033 -160647399 + B1F SINE Alu 49 144 -5 1 863 555 16 0 0 chr1 36548209 36548273 -160647159 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 863 262 164 177 31 chr1 36548300 36548387 -160647045 - B1F1 SINE Alu 0 149 27 1 863 292 296 113 75 chr1 36548445 36548551 -160646881 + PB1 SINE Alu 2 111 -16 1 863 330 247 19 70 chr1 36548587 36548727 -160646705 + RSINE1 SINE B4 33 164 -1 1 863 212 224 32 65 chr1 36549154 36549216 -160646216 - B4A SINE B4 -232 60 1 1 863 357 226 241 9 chr1 36550042 36550069 -160645363 + B1F2 SINE Alu 1 143 -6 1 863 535 180 0 0 chr1 36550069 36550158 -160645274 + ID_B1 SINE B4 130 218 -6 1 863 309 51 0 0 chr1 36550293 36550332 -160645100 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 1 863 417 278 58 32 chr1 36550598 36550754 -160644678 - RSINE1 SINE B4 -2 163 4 1 863 422 279 179 5 chr1 36550773 36550957 -160644475 - B3 SINE B2 0 216 1 1 863 271 273 39 0 chr1 36551081 36551158 -160644274 - MADE2 DNA Mariner 0 80 1 1 863 225 143 17 51 chr1 36551518 36551577 -160643855 - Lx8 LINE L1 -2 7471 7415 1 863 393 226 170 7 chr1 36551580 36551727 -160643705 - Lx8 LINE L1 -336 7137 6967 1 863 330 266 17 23 chr1 36551763 36551936 -160643496 + (GTGTG)n Simple_repeat Simple_repeat 2 173 0 1 863 189 197 0 0 chr1 36552008 36552074 -160643358 + (GGGTG)n Simple_repeat Simple_repeat 4 69 0 1 863 473 259 11 11 chr1 36552162 36552338 -160643094 + (GTGTG)n Simple_repeat Simple_repeat 4 179 0 1 863 222 194 20 34 chr1 36552372 36552521 -160642911 + (GTGTG)n Simple_repeat Simple_repeat 3 149 0 1 863 1666 230 50 20 chr1 36552574 36553013 -160642419 - Lx8 LINE L1 -518 6955 6504 1 863 199 269 82 55 chr1 36553116 36553226 -160642206 - L2 LINE L2 -814 2605 2493 1 863 396 293 117 46 chr1 36553337 36553534 -160641898 + ID_B1 SINE B4 5 215 -9 1 863 181 162 216 0 chr1 36553595 36553632 -160641800 - L2 LINE L2 -1169 2250 2206 1 863 274 267 20 91 chr1 36553658 36553757 -160641675 + PB1D10 SINE Alu 18 109 -8 1 863 514 188 24 64 chr1 36553744 36553869 -160641563 + B3 SINE B2 80 199 -17 1 863 254 101 116 0 chr1 36553881 36553950 -160641482 + GA-rich Low_complexity Low_complexity 3 79 0 1 863 182 282 0 0 chr1 36554065 36554104 -160641328 - L2 LINE L2 -1405 2014 1976 1 863 228 67 0 0 chr1 36554464 36554494 -160640938 + (TCC)n Simple_repeat Simple_repeat 2 31 0 1 863 537 319 7 0 chr1 36554514 36554655 -160640777 - B1F SINE Alu -7 142 1 1 863 302 212 101 0 chr1 36557800 36557894 -160637538 - PB1D10 SINE Alu 0 117 15 1 863 267 54 0 0 chr1 36559117 36559154 -160636278 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 863 222 154 26 0 chr1 36559154 36559193 -160636239 - ID4_ SINE ID -41 42 3 1 863 1132 87 52 11 chr1 36559257 36559277 -160636155 - B2_Mm2 SINE B2 0 195 176 1 863 209 33 33 0 chr1 36559277 36559307 -160636125 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 863 1099 51 14 14 chr1 36559307 36559446 -160635986 - B1_Mus1 SINE Alu -9 139 1 1 863 1132 87 52 11 chr1 36559446 36559598 -160635834 - B2_Mm2 SINE B2 -20 175 16 1 863 662 208 77 44 chr1 36559601 36559782 -160635650 - B2_Mm2 SINE B2 -7 188 2 1 863 384 299 37 18 chr1 36560050 36560159 -160635273 + RSINE1 SINE B4 55 165 0 1 863 458 146 310 0 chr1 36560187 36560304 -160635128 + B2_Mm2 SINE B2 1 160 -38 1 863 23 0 0 0 chr1 36560320 36560343 -160635089 + AT_rich Low_complexity Low_complexity 1 23 0 1 863 311 292 0 63 chr1 36560343 36560438 -160634994 + B2_Mm2 SINE B2 9 97 -98 1 863 395 197 0 0 chr1 36560440 36560529 -160634903 - B1F SINE Alu 0 149 61 1 863 610 185 23 8 chr1 36560726 36560857 -160634575 - RSINE1 SINE B4 0 165 33 1 863 327 370 19 0 chr1 36561598 36561706 -160633726 + PB1D10 SINE Alu 1 110 -7 1 863 962 150 0 28 chr1 36561728 36561872 -160633560 + B1_Mur4 SINE Alu 1 140 -10 1 863 265 238 57 129 chr1 36561872 36562056 -160633376 - B2_Mm1t SINE B2 -9 184 14 1 863 398 259 25 41 chr1 36562774 36562895 -160632537 - PB1D9 SINE Alu 0 120 2 1 863 528 30 0 0 chr1 36562935 36563001 -160632431 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 863 234 0 0 0 chr1 36563678 36563704 -160631728 + (T)n Simple_repeat Simple_repeat 1 26 0 1 863 24 0 0 0 chr1 36563793 36563817 -160631615 + AT_rich Low_complexity Low_complexity 1 24 0 1 863 338 280 16 25 chr1 36566185 36566298 -160629134 - PB1D9 SINE Alu 0 120 8 1 863 920 164 14 7 chr1 36566298 36566445 -160628987 - B1_Mur3 SINE Alu 0 149 2 1 863 436 206 36 45 chr1 36566515 36566627 -160628805 + PB1D10 SINE Alu 1 111 -6 1 863 183 320 82 0 chr1 36566836 36566933 -160628499 + L2a LINE L2 3038 3142 -284 1 863 1126 64 28 0 chr1 36567265 36567406 -160628026 + B1_Mus1 SINE Alu 2 146 -2 1 863 873 180 83 6 chr1 36567502 36567670 -160627762 + B3A SINE B2 1 181 -17 1 863 471 234 135 18 chr1 36568221 36568391 -160627041 + B3A SINE B2 9 198 0 1 863 207 250 0 15 chr1 36568531 36568596 -160626836 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 1 863 24 0 0 0 chr1 36568835 36568859 -160626573 + GC_rich Low_complexity Low_complexity 1 24 0 1 864 213 282 22 28 chr1 36569142 36569321 -160626111 + (CGG)n Simple_repeat Simple_repeat 2 179 0 1 864 346 212 153 0 chr1 36570174 36570259 -160625173 + ID_B1 SINE B4 4 101 -123 1 864 506 228 142 24 chr1 36570666 36570830 -160624602 - B3 SINE B2 -3 213 46 1 864 1072 63 7 21 chr1 36570959 36570970 -160624462 - B1_Mus2 SINE Alu -3 144 135 1 864 208 0 0 59 chr1 36570970 36571004 -160624428 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 864 1072 63 7 21 chr1 36571004 36571137 -160624295 - B1_Mus2 SINE Alu -13 134 2 1 864 962 187 0 0 chr1 36571168 36571339 -160624093 - B3 SINE B2 -7 209 39 1 864 379 205 24 12 chr1 36571417 36571501 -160623931 + PB1D9 SINE Alu 11 95 -25 1 864 261 0 0 0 chr1 36572639 36572668 -160622764 + (A)n Simple_repeat Simple_repeat 1 29 0 1 864 1227 61 0 0 chr1 36572668 36572815 -160622617 + B1_Mm SINE Alu 1 147 0 1 864 364 234 58 15 chr1 36572921 36573040 -160622392 - PB1D9 SINE Alu 0 120 3 1 864 246 274 0 16 chr1 36573579 36573642 -160621790 - ID4_ SINE ID 0 83 22 2 864 1281 34 0 0 chr1 36574162 36574309 -160621123 + B1_Mus1 SINE Alu 2 148 0 2 864 845 191 20 0 chr1 36574336 36574483 -160620949 + B1_Mur4 SINE Alu 1 150 0 2 864 198 71 0 0 chr1 36575055 36575083 -160620349 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 864 29 0 0 0 chr1 36576346 36576375 -160619057 + AT_rich Low_complexity Low_complexity 1 29 0 2 864 418 118 26 26 chr1 36576384 36576462 -160618970 + PB1D9 SINE Alu 43 120 0 2 864 803 120 17 0 chr1 36579460 36579577 -160615855 - PB1D9 SINE Alu 0 120 2 2 864 211 266 15 15 chr1 36579954 36580019 -160615413 + C-rich Low_complexity Low_complexity 5 69 0 2 864 274 260 13 40 chr1 36580024 36580100 -160615332 - ID4_ SINE ID -9 74 1 2 864 546 285 120 0 chr1 36580472 36580672 -160614760 + MER58A DNA MER1_type 1 224 0 2 864 207 176 0 0 chr1 36580986 36581020 -160614412 + CT-rich Low_complexity Low_complexity 1 34 0 2 864 312 261 235 44 chr1 36581276 36581301 -160614131 + ID_B1 SINE B4 63 224 0 2 864 480 226 0 45 chr1 36581301 36581412 -160614020 + PB1D7 SINE Alu 13 118 -2 2 864 538 254 123 0 chr1 36581412 36581542 -160613890 + RSINE1 SINE B4 3 148 -17 2 864 366 271 52 0 chr1 36581638 36581734 -160613698 + PB1D10 SINE Alu 7 107 -10 2 864 403 242 138 26 chr1 36583375 36583570 -160611862 - L1MD3 LINE L1 -66 7929 7713 2 864 273 280 97 0 chr1 36583580 36583673 -160611759 - L1MC4a LINE L1 -21 7861 7760 2 864 877 292 131 39 chr1 36583761 36584218 -160611214 - L1MD1 LINE L1 -238 6004 5506 2 864 320 221 11 75 chr1 36584370 36584463 -160610969 - L1MD1 LINE L1 -841 5305 5219 2 864 198 0 0 0 chr1 36584725 36584747 -160610685 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 864 567 200 26 9 chr1 36584747 36584863 -160610569 - PB1D9 SINE Alu -2 118 1 2 864 1201 55 7 0 chr1 36584912 36585058 -160610374 - B1_Mus1 SINE Alu 0 148 2 2 864 258 222 40 40 chr1 36585210 36585285 -160610147 - B3 SINE B2 -38 178 104 2 864 536 126 205 63 chr1 36585527 36585654 -160609778 + B1_Mur4 SINE Alu 3 147 -3 2 864 1138 96 0 0 chr1 36585656 36585802 -160609630 + B1_Mm SINE Alu 2 147 0 2 864 312 212 138 0 chr1 36585833 36585913 -160609519 - B1F SINE Alu -58 91 1 2 864 396 167 0 0 chr1 36585999 36586071 -160609361 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 864 342 204 125 31 chr1 36586116 36586212 -160609220 - L1MD1 LINE L1 -1493 4653 4549 2 864 1241 121 6 6 chr1 36586220 36586395 -160609037 - B2_Mm2 SINE B2 -19 176 2 2 864 193 398 35 9 chr1 36586573 36586631 -160608801 - MER5B DNA MER1_type -55 123 67 2 864 386 221 148 74 chr1 36586631 36586753 -160608679 - B1_Mur1 SINE Alu -17 132 2 2 864 193 398 35 9 chr1 36586753 36586808 -160608624 - MER5B DNA MER1_type -112 66 8 2 864 322 215 38 0 chr1 36589707 36589786 -160605646 + MLT1C LTR MaLR 33 114 -353 2 864 1175 81 0 0 chr1 36589895 36590043 -160605389 + B1_Mus1 SINE Alu 1 148 0 2 864 550 286 34 0 chr1 36590217 36590364 -160605068 + MTE2b LTR MaLR 34 185 -194 2 864 377 266 97 0 chr1 36590380 36590493 -160604939 + B2_Mm2 SINE B2 1 124 -71 2 864 430 241 76 53 chr1 36590483 36590653 -160604779 + MTE2b LTR MaLR 202 377 -2 2 864 210 143 0 0 chr1 36591469 36591504 -160603928 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 864 257 293 0 39 chr1 36592257 36592335 -160603097 + tRNA-Ala-GCG tRNA tRNA 1 75 0 2 864 1185 55 14 0 chr1 36593627 36593773 -160601659 + B1_Mus1 SINE Alu 1 148 0 2 864 395 119 15 0 chr1 36593773 36593840 -160601592 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 2 864 213 195 0 0 chr1 36593874 36593914 -160601518 + B1F2 SINE Alu 1 40 -109 2 864 531 232 57 14 chr1 36593914 36594018 -160601414 + B1_Mur4 SINE Alu 2 104 -46 2 864 194 0 0 37 chr1 36594018 36594045 -160601387 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2 864 531 232 57 14 chr1 36594045 36594080 -160601352 + B1_Mur4 SINE Alu 105 147 -3 2 864 1071 95 0 20 chr1 36594125 36594275 -160601157 + B1_Mus2 SINE Alu 1 147 0 2 864 216 0 0 0 chr1 36594327 36594351 -160601081 + (T)n Simple_repeat Simple_repeat 1 24 0 2 864 328 220 132 0 chr1 36594680 36594771 -160600661 - PB1D7 SINE Alu -15 105 3 2 864 411 250 0 40 chr1 36595151 36595251 -160600181 + PB1D10 SINE Alu 1 96 -21 2 864 410 189 124 21 chr1 36595362 36595459 -160599973 - PB1D9 SINE Alu -12 108 2 2 864 302 294 35 0 chr1 36595534 36595551 -160599881 - ID_B1 SINE B4 -130 94 7 2 864 333 250 15 0 chr1 36595551 36595619 -160599813 - ID4_ SINE ID -8 75 7 2 864 249 192 127 13 chr1 36595625 36595704 -160599728 - PB1D10 SINE Alu -29 88 1 2 864 363 44 0 0 chr1 36596402 36596447 -160598985 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 864 469 257 10 0 chr1 36596669 36596770 -160598662 - B1F2 SINE Alu -45 104 3 2 864 841 61 83 8 chr1 36596884 36597016 -160598416 - B1_Mur4 SINE Alu -1 149 8 2 864 353 257 66 17 chr1 36597235 36597394 -160598038 - MTC LTR MaLR -9 412 237 2 864 231 129 323 0 chr1 36597625 36597687 -160597745 - B1_Mm SINE Alu -46 101 20 2 864 201 147 0 0 chr1 36597847 36597881 -160597551 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 2 864 1648 36 0 10 chr1 36597947 36598141 -160597291 + B2_Mm1a SINE B2 2 193 0 2 864 340 270 7 96 chr1 36598447 36598582 -160596850 + MT2B LTR ERVL 154 276 -325 2 864 667 193 0 0 chr1 36598476 36598595 -160596837 + B1_Mur1 SINE Alu 17 135 -14 2 864 392 287 89 44 chr1 36599106 36599241 -160596191 + ID_B1 SINE B4 83 223 -1 2 864 225 0 0 0 chr1 36599325 36599350 -160596082 + (CCA)n Simple_repeat Simple_repeat 1 25 0 2 864 344 309 0 0 chr1 36599369 36599453 -160595979 + RSINE1 SINE B4 3 86 -79 2 864 215 390 0 0 chr1 36599453 36599464 -160595968 + B2_Mm2 SINE B2 2 96 -99 2 864 864 140 0 22 chr1 36599986 36600125 -160595307 + B1_Mm SINE Alu 4 139 -8 2 864 405 258 75 0 chr1 36600144 36600264 -160595168 + RSINE1 SINE B4 16 144 -21 2 864 794 182 14 14 chr1 36601169 36601314 -160594118 + B1_Mur2 SINE Alu 5 149 0 2 864 1324 98 5 30 chr1 36601318 36601518 -160593914 + B2_Mm2 SINE B2 1 195 0 2 864 685 202 127 37 chr1 36601544 36601735 -160593697 + B3 SINE B2 2 208 -8 2 864 315 289 13 13 chr1 36601735 36601886 -160593546 + (TA)n Simple_repeat Simple_repeat 2 152 0 2 864 252 86 0 0 chr1 36601898 36601933 -160593499 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 864 803 182 8 8 chr1 36601988 36602121 -160593311 + B1_Mur2 SINE Alu 2 134 -15 2 864 218 254 91 78 chr1 36602341 36602418 -160593014 - PB1D7 SINE Alu -7 113 36 2 864 229 243 40 79 chr1 36602498 36602574 -160592858 - MER20 DNA MER1_type 0 219 147 2 864 435 196 102 108 chr1 36602869 36602908 -160592524 + B3 SINE B2 1 26 -190 2 864 1218 41 0 14 chr1 36602908 36603055 -160592377 + B1_Mm SINE Alu 3 147 0 2 864 216 0 0 0 chr1 36603060 36603084 -160592348 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 864 435 196 102 108 chr1 36603084 36603204 -160592228 + B3 SINE B2 31 165 -51 2 864 207 0 0 0 chr1 36606032 36606055 -160589377 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 864 195 129 0 0 chr1 36608177 36608208 -160587224 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 864 1148 75 0 13 chr1 36617407 36617556 -160577876 - B1_Mus1 SINE Alu 0 148 2 2 864 212 182 83 77 chr1 36620451 36620544 -160574888 + MIRb SINE MIR 86 183 -85 2 864 232 200 0 0 chr1 36620683 36620723 -160574709 + tRNA-Ala-GCY_ tRNA tRNA 18 57 -18 2 864 225 0 0 0 chr1 36621329 36621354 -160574078 + (GGA)n Simple_repeat Simple_repeat 2 26 0 2 864 180 111 0 0 chr1 36621756 36621783 -160573649 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 864 276 247 31 41 chr1 36622373 36622470 -160572962 + PB1D10 SINE Alu 22 117 0 2 864 222 280 0 0 chr1 36622470 36622545 -160572887 + A-rich Low_complexity Low_complexity 1 75 0 2 864 308 242 45 0 chr1 36623891 36623957 -160571475 - ID4_ SINE ID -13 70 2 2 864 283 250 64 21 chr1 36624010 36624104 -160571328 + B3A SINE B2 62 159 -39 2 864 414 0 0 0 chr1 36624124 36624170 -160571262 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 864 301 254 0 0 chr1 36624192 36624263 -160571169 + PB1D9 SINE Alu 10 80 -40 2 864 27 0 0 0 chr1 36624396 36624423 -160571009 + AT_rich Low_complexity Low_complexity 1 27 0 2 864 21 0 0 0 chr1 36624429 36624450 -160570982 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 750 260 100 0 chr1 36624467 36624667 -160570765 + ID_B1 SINE B4 5 224 0 2 864 215 336 33 74 chr1 36625544 36625666 -160569766 + ID_B1 SINE B4 16 132 -92 2 864 359 246 91 0 chr1 36625728 36625838 -160569594 + ID_B1 SINE B4 105 224 0 2 864 745 127 16 23 chr1 36625856 36625985 -160569447 + B1_Mus2 SINE Alu 1 128 -19 2 864 429 20 0 0 chr1 36626456 36626506 -160568926 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 864 252 0 0 0 chr1 36627546 36627574 -160567858 + (CAGCC)n Simple_repeat Simple_repeat 3 30 0 2 864 21 0 0 0 chr1 36627732 36627753 -160567679 + AT_rich Low_complexity Low_complexity 1 21 0 2 864 248 368 0 0 chr1 36627920 36627996 -160567436 + (CG)n Simple_repeat Simple_repeat 2 77 0 2 864 387 0 0 0 chr1 36631414 36631457 -160563975 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 864 198 118 0 0 chr1 36631660 36631694 -160563738 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 2 864 312 244 0 0 chr1 36631983 36632073 -160563359 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 864 313 239 0 102 chr1 36632658 36632756 -160562676 - PB1 SINE Alu -5 122 35 2 864 447 92 0 0 chr1 36635702 36635767 -160559665 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 864 357 245 39 10 chr1 36636146 36636249 -160559183 - PB1D7 SINE Alu -9 111 6 3 864 330 255 35 73 chr1 36636175 36636349 -160559083 - RSINE1 SINE B4 -126 166 4 3 864 407 271 52 52 chr1 36636352 36636488 -160558944 - B1F1 SINE Alu 0 149 14 3 864 366 290 127 32 chr1 36638128 36638317 -160557115 + L2a LINE L2 3220 3426 0 3 864 706 186 82 37 chr1 36638422 36638556 -160556876 + B1_Mur3 SINE Alu 2 141 -8 3 864 189 0 0 0 chr1 36638558 36638579 -160556853 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 864 228 224 233 12 chr1 36638599 36638685 -160556747 + B1F2 SINE Alu 2 106 -43 3 864 510 244 8 31 chr1 36638687 36638814 -160556618 + RSINE1 SINE B4 13 136 -29 3 864 261 345 118 15 chr1 36639210 36639472 -160555960 + L2a LINE L2 2994 3282 -144 3 864 1222 68 0 0 chr1 36641711 36641858 -160553574 + B1_Mus2 SINE Alu 1 147 0 3 864 198 0 0 0 chr1 36641858 36641880 -160553552 + (A)n Simple_repeat Simple_repeat 1 22 0 3 864 446 147 13 0 chr1 36641909 36641984 -160553448 - B3A SINE B2 -121 77 2 3 864 359 242 60 10 chr1 36641985 36642085 -160553347 + Lx8 LINE L1 7226 7330 -143 3 864 215 135 0 0 chr1 36642205 36642242 -160553190 + B1F SINE Alu 26 62 -87 3 864 344 250 0 13 chr1 36642451 36642528 -160552904 - PB1 SINE Alu -30 97 22 3 864 287 253 0 0 chr1 36642534 36642606 -160552826 - ID4 SINE ID -11 72 1 3 864 291 54 0 0 chr1 36643346 36643383 -160552049 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 864 247 351 35 18 chr1 36644887 36645000 -160550432 + L1ME3A LINE L1 6045 6159 -14 3 864 230 0 33 0 chr1 36645527 36645557 -160549875 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 864 206 182 45 0 chr1 36645718 36645762 -160549670 + (CACG)n Simple_repeat Simple_repeat 1 46 0 3 864 201 74 0 0 chr1 36646166 36646193 -160549239 + (CAGGC)n Simple_repeat Simple_repeat 2 28 0 3 864 319 286 40 69 chr1 36646937 36647201 -160548231 + L1ME3A LINE L1 5792 6050 -123 3 864 205 176 0 0 chr1 36648250 36648284 -160547148 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 864 191 36 0 35 chr1 36648905 36648934 -160546498 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 3 864 640 242 113 21 chr1 36649234 36649428 -160546004 - B3 SINE B2 -4 212 1 3 864 249 108 0 0 chr1 36649979 36650016 -160545416 + (AGGGGG)n Simple_repeat Simple_repeat 4 40 0 3 864 691 224 7 27 chr1 36650341 36650488 -160544944 - B1_Mur4 SINE Alu -5 145 2 3 864 270 81 0 0 chr1 36650614 36650651 -160544781 + (CATA)n Simple_repeat Simple_repeat 3 39 0 3 864 369 291 140 15 chr1 36650819 36650955 -160544477 + RSINE1 SINE B4 2 154 -11 3 864 1137 53 0 0 chr1 36651004 36651137 -160544295 + B1_Mus2 SINE Alu 5 137 -10 3 864 207 0 0 0 chr1 36651137 36651160 -160544272 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 864 898 89 0 0 chr1 36651169 36651293 -160544139 + B1_Mus1 SINE Alu 1 124 -24 3 864 186 43 0 0 chr1 36651293 36651316 -160544116 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 864 488 304 30 0 chr1 36651504 36651639 -160543793 - ID_B1 SINE B4 -5 219 81 3 864 294 215 15 0 chr1 36651647 36651712 -160543720 - ID_B1 SINE B4 -54 170 105 3 864 216 313 15 0 chr1 36651830 36651897 -160543535 - ID SINE ID -156 68 1 3 864 862 167 28 7 chr1 36651914 36652059 -160543373 - B1_Mur1 SINE Alu 0 149 2 3 864 361 244 137 60 chr1 36652079 36652262 -160543170 - B3A SINE B2 0 198 2 3 864 463 132 24 0 chr1 36652715 36652798 -160542634 + URR1B DNA MER1_type 83 167 -58 3 864 681 169 5 33 chr1 36653406 36653590 -160541842 + CT-rich Low_complexity Low_complexity 1 179 0 3 864 213 39 0 0 chr1 36653587 36653613 -160541819 + (TCC)n Simple_repeat Simple_repeat 3 28 0 3 864 1055 52 0 0 chr1 36653615 36653751 -160541681 - B1_Mus1 SINE Alu 0 148 13 3 864 1150 201 115 7 chr1 36653798 36654068 -160541364 - MTD LTR MaLR -120 299 1 3 864 293 245 9 146 chr1 36654102 36654212 -160541220 - B4A SINE B4 -117 175 81 3 864 212 131 0 21 chr1 36654234 36654281 -160541151 + C-rich Low_complexity Low_complexity 2 47 0 3 864 418 254 77 20 chr1 36654298 36654435 -160540997 - B1F SINE Alu -1 148 4 3 864 324 328 0 17 chr1 36654436 36654447 -160540985 - PB1D10 SINE Alu -1 116 106 3 864 459 0 0 0 chr1 36654447 36654498 -160540934 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 864 324 328 0 17 chr1 36654498 36654604 -160540828 - PB1D10 SINE Alu -12 105 1 3 864 967 157 7 0 chr1 36654942 36655089 -160540343 - B1_Mur4 SINE Alu 0 150 3 3 864 1192 68 0 0 chr1 36655169 36655316 -160540116 + B1_Mus2 SINE Alu 1 147 0 3 864 1270 53 0 12 chr1 36655697 36655869 -160539563 + B2_Mm2 SINE B2 3 172 -23 3 864 761 194 64 7 chr1 36657978 36658118 -160537314 + B1_Mur4 SINE Alu 1 148 -2 3 864 232 263 188 49 chr1 36658129 36658273 -160537159 - MLT1F2 LTR MaLR -55 505 342 3 864 1241 21 7 7 chr1 36659464 36659609 -160535823 - B1_Mm SINE Alu -1 146 2 3 864 925 251 52 2 chr1 36659711 36659935 -160535497 - ID_B1 SINE B4 -47 245 10 3 864 239 328 0 0 chr1 36660740 36660807 -160534625 - ID2 SINE ID -7 76 10 3 864 527 285 0 53 chr1 36661092 36661244 -160534188 + ID_B1 SINE B4 80 223 -1 3 864 280 186 16 33 chr1 36661878 36661939 -160533493 + ORR1E LTR MaLR 258 317 -42 3 864 249 299 0 0 chr1 36662276 36662343 -160533089 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 864 590 177 18 0 chr1 36662447 36662560 -160532872 - B4A SINE B4 -61 231 117 3 864 1041 136 7 0 chr1 36662884 36663031 -160532401 + B1_Mur4 SINE Alu 3 150 0 3 864 645 76 0 0 chr1 36664422 36664514 -160530918 + (TC)n Simple_repeat Simple_repeat 2 93 0 3 864 587 219 8 31 chr1 36664562 36664689 -160530743 - B1_Mur1 SINE Alu -4 145 22 3 864 359 272 0 0 chr1 36664732 36664813 -160530619 + B1F2 SINE Alu 63 143 -6 3 864 310 247 0 52 chr1 36664822 36664899 -160530533 + ID SINE ID 8 80 -144 3 864 360 164 55 0 chr1 36666068 36666141 -160529291 + ID_B1 SINE B4 65 141 -83 3 864 426 280 19 0 chr1 36666087 36666194 -160529238 + PB1D7 SINE Alu 7 115 -5 3 864 1160 66 0 0 chr1 36666199 36666336 -160529096 + B1_Mus1 SINE Alu 1 137 -11 3 864 183 156 0 0 chr1 36666448 36666480 -160528952 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 3 864 310 214 76 67 chr1 36666818 36666923 -160528509 + PB1D7 SINE Alu 22 127 0 3 864 407 299 57 25 chr1 36666932 36667090 -160528342 + RSINE1 SINE B4 3 165 0 3 864 297 100 0 0 chr1 36669099 36669149 -160526283 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3 864 240 254 155 0 chr1 36670087 36670158 -160525274 - ID4_ SINE ID 0 83 2 3 864 475 211 28 19 chr1 36670325 36670431 -160525001 - PB1D7 SINE Alu -9 111 5 3 864 267 238 92 35 chr1 36670923 36671010 -160524422 - MLT1L LTR MaLR -176 434 343 3 864 319 265 19 0 chr1 36671133 36671238 -160524194 - L1MA4A LINE L1 -398 5905 5789 3 864 695 208 50 0 chr1 36671240 36671360 -160524072 - B1_Mur1 SINE Alu -21 128 3 3 864 235 237 43 92 chr1 36671361 36671471 -160523961 - L1_Mur2 LINE L1 -687 5491 5367 3 864 1331 263 74 36 chr1 36671537 36671927 -160523505 - MTD LTR MaLR -14 405 1 3 864 388 297 60 12 chr1 36672184 36672351 -160523081 + L1MC LINE L1 5563 5737 -607 3 864 881 143 0 52 chr1 36672354 36672509 -160522923 + B1_Mus1 SINE Alu 2 148 0 3 864 216 240 20 0 chr1 36672582 36672632 -160522800 - MER5B DNA MER1_type -126 52 2 3 864 934 233 0 11 chr1 36672887 36673065 -160522367 + B3A SINE B2 5 180 -18 3 864 1210 41 0 27 chr1 36673075 36673225 -160522207 - B1_Mm SINE Alu 0 147 2 3 864 1108 53 8 0 chr1 36673283 36673415 -160522017 + B1_Mus1 SINE Alu 3 135 -13 3 864 1999 301 87 119 chr1 36673445 36673610 -160521822 + Lx7 LINE L1 3744 3909 -1971 3 864 811 209 0 26 chr1 36673610 36673762 -160521670 - B1_Mur1 SINE Alu 0 149 2 3 864 2025 297 96 76 chr1 36673762 36674063 -160521369 + Lx7 LINE L1 3910 4224 -1656 3 864 651 194 72 8 chr1 36674063 36674188 -160521244 + B1_Mur1 SINE Alu 12 144 -5 3 864 2025 297 96 76 chr1 36674188 36675363 -160520069 + Lx7 LINE L1 4225 5455 -425 3 864 744 146 0 186 chr1 36675363 36675540 -160519892 + B1_Mur4 SINE Alu 2 145 -5 3 864 2025 274 123 39 chr1 36675540 36676065 -160519367 + Lx7 LINE L1 5418 5970 -1674 3 864 429 282 11 28 chr1 36676157 36676339 -160519093 + GA-rich Low_complexity Low_complexity 2 180 0 3 864 427 282 11 28 chr1 36676366 36676548 -160518884 + GA-rich Low_complexity Low_complexity 2 180 0 3 864 452 291 0 32 chr1 36676559 36676744 -160518688 + GA-rich Low_complexity Low_complexity 2 180 0 3 864 441 288 14 22 chr1 36676751 36677199 -160518233 + GA-rich Low_complexity Low_complexity 1 444 0 3 864 689 264 104 0 chr1 36677286 36677487 -160517945 + ID_B1 SINE B4 3 224 0 3 864 615 304 0 6 chr1 36678120 36678282 -160517150 + RSINE1 SINE B4 1 161 -4 3 864 561 256 7 43 chr1 36678300 36678439 -160516993 - B1_Mur1 SINE Alu -7 142 9 3 864 661 271 69 3 chr1 36678441 36678618 -160516814 + ID_B1 SINE B4 38 228 -64 3 864 769 150 8 0 chr1 36678700 36678820 -160516612 + B1_Mur4 SINE Alu 1 121 -29 3 864 264 226 11 116 chr1 36678742 36678837 -160516595 + RLTR25B LTR ERVK 444 528 -500 3 864 2556 81 12 0 chr1 36678839 36679162 -160516270 - ORR1A2 LTR MaLR 0 327 1 3 864 207 100 0 0 chr1 36679162 36679192 -160516240 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 864 1238 231 173 9 chr1 36679245 36679586 -160515846 - MTD LTR MaLR -13 406 10 3 864 205 100 20 20 chr1 36679588 36679639 -160515793 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 864 2161 214 61 162 chr1 36679678 36679811 -160515621 - MTD-int LTR MaLR 0 1258 1109 3 864 660 291 64 5 chr1 36679811 36679978 -160515454 + B3 SINE B2 1 178 -38 3 864 297 75 0 0 chr1 36679978 36680018 -160515414 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 864 660 291 64 5 chr1 36680018 36680054 -160515378 + B3 SINE B2 179 215 -1 3 864 2161 214 61 162 chr1 36680054 36680197 -160515235 - MTD-int LTR MaLR -150 1108 1051 3 864 444 211 254 0 chr1 36680197 36680311 -160515121 - B1_Mur4 SINE Alu -6 144 2 4 864 2161 216 59 154 chr1 36680311 36681020 -160514412 - MTD-int LTR MaLR -425 1538 291 3 864 300 53 0 0 chr1 36681020 36681058 -160514374 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 4 864 761 137 8 0 chr1 36681058 36681175 -160514257 - B1_Mus2 SINE Alu -1 146 29 4 864 1557 37 21 0 chr1 36681217 36681405 -160514027 + B2_Mm1a SINE B2 2 193 0 4 864 1320 153 40 27 chr1 36681418 36681640 -160513792 + URR1B DNA MER1_type 1 225 0 4 864 1226 41 7 0 chr1 36681702 36681849 -160513583 + B1_Mus1 SINE Alu 1 148 0 4 864 723 188 185 12 chr1 36681864 36682026 -160513406 - ID_B1 SINE B4 -27 197 8 4 864 520 296 57 36 chr1 36682738 36682931 -160512501 - B3A SINE B2 -1 197 1 4 864 276 152 88 0 chr1 36682931 36683030 -160512402 + L1M4 LINE L1 4409 4547 -1599 4 864 585 327 99 65 chr1 36683030 36683383 -160512049 + MLT1A0 LTR MaLR 1 365 0 4 864 1645 104 182 0 chr1 36683595 36683864 -160511568 + ORR1A3 LTR MaLR 1 318 -8 4 864 379 306 55 41 chr1 36683864 36684082 -160511350 + L1M4 LINE L1 4790 5010 -1136 4 864 706 145 18 9 chr1 36684088 36684199 -160511233 - PB1D9 SINE Alu 0 120 9 4 864 399 256 168 15 chr1 36684199 36684213 -160511219 - B4 SINE B4 -61 195 81 4 864 716 224 0 20 chr1 36684211 36684361 -160511071 - B1_Mur1 SINE Alu -1 148 2 4 864 308 297 94 94 chr1 36684361 36684521 -160510911 + L1M4 LINE L1 5001 5160 -986 4 864 368 253 0 12 chr1 36684539 36684619 -160510813 + B4A SINE B4 15 93 -199 4 864 748 194 27 20 chr1 36684804 36684951 -160510481 + B1_Mur1 SINE Alu 2 149 0 4 864 622 225 52 34 chr1 36685101 36685369 -160510063 + MTD LTR MaLR 120 405 -14 4 864 985 116 0 58 chr1 36685795 36685951 -160509481 - B1_Mus2 SINE Alu 0 147 1 4 864 226 312 151 34 chr1 36686048 36686194 -160509238 - MER2 DNA MER2_type -53 292 130 4 864 245 301 128 34 chr1 36686232 36686349 -160509083 - MLT1N2 LTR MaLR -423 139 12 4 864 756 174 26 53 chr1 36686399 36686551 -160508881 + B1_Mur3 SINE Alu 1 148 -1 4 864 781 256 6 0 chr1 36686577 36686737 -160508695 + RSINE1 SINE B4 5 165 0 4 864 468 313 0 74 chr1 36687859 36688090 -160507342 - L1MB3 LINE L1 -283 5900 5687 4 864 610 147 0 10 chr1 36689383 36689479 -160505953 - B1_Mur4 SINE Alu -4 146 52 4 864 441 0 0 0 chr1 36689532 36689581 -160505851 + (TATG)n Simple_repeat Simple_repeat 4 52 0 4 864 378 323 84 30 chr1 36689581 36689747 -160505685 - ID_B1 SINE B4 -1 223 49 4 864 221 242 25 175 chr1 36689786 36689906 -160505526 - MIRb SINE MIR -145 123 22 4 864 192 242 14 70 chr1 36690657 36690728 -160504704 - MIRc SINE MIR -160 108 42 4 864 21 0 0 0 chr1 36693213 36693234 -160502198 + AT_rich Low_complexity Low_complexity 1 21 0 4 864 678 263 39 0 chr1 36694060 36694216 -160501216 + RSINE1 SINE B4 3 164 -1 4 864 23 33 0 0 chr1 36694247 36694277 -160501155 + AT_rich Low_complexity Low_complexity 1 30 0 4 864 1242 100 0 0 chr1 36694642 36694822 -160500610 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 4 864 441 0 0 0 chr1 36694825 36694874 -160500558 + (GAGAA)n Simple_repeat Simple_repeat 1 49 0 4 864 192 77 0 0 chr1 36695567 36695593 -160499839 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 4 864 528 59 0 0 chr1 36695598 36695666 -160499766 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 864 342 67 0 0 chr1 36696165 36696210 -160499222 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 864 871 208 0 0 chr1 36696216 36696360 -160499072 + B1_Mur4 SINE Alu 2 145 -5 4 864 497 327 38 19 chr1 36696570 36696729 -160498703 - RSINE1 SINE B4 -1 164 3 4 864 878 124 260 0 chr1 36696799 36696976 -160498456 + URR1A DNA MER1_type 4 226 0 4 864 195 114 0 0 chr1 36697431 36697466 -160497966 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 864 595 260 31 8 chr1 36697876 36698004 -160497428 + RSINE1 SINE B4 4 134 -31 4 864 1040 173 56 30 chr1 36698212 36698409 -160497023 + B3 SINE B2 1 202 -14 4 864 280 284 54 18 chr1 36698646 36698757 -160496675 + Kanga2_a DNA Tc2 270 384 -504 4 864 255 263 68 30 chr1 36698956 36699069 -160496363 - B3 SINE B2 -28 170 49 4 864 694 335 86 49 chr1 36699096 36699482 -160495950 - Tigger7 DNA MER2_type -2081 410 11 4 864 1399 34 97 0 chr1 36699701 36699876 -160495556 - B2_Mm1a SINE B2 0 193 2 4 864 484 282 45 83 chr1 36699909 36700094 -160495338 + B3A SINE B2 1 180 -36 4 864 189 107 0 0 chr1 36700094 36700122 -160495310 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 864 425 327 47 70 chr1 36700122 36700150 -160495282 + B3 SINE B2 181 208 -8 4 865 1118 233 61 27 chr1 36700203 36700498 -160494934 + MTD LTR MaLR 1 305 -114 4 865 2423 133 78 0 chr1 36700661 36701044 -160494388 - MTD LTR MaLR -6 413 1 4 865 1475 270 137 6 chr1 36701795 36702283 -160493149 - Tigger7 DNA MER2_type -1934 557 6 4 865 186 221 74 49 chr1 36702945 36703026 -160492406 + MIRc SINE MIR 132 214 -54 4 865 303 267 132 11 chr1 36703049 36703140 -160492292 + LTR90A LTR LTR 1 102 -874 4 865 822 206 64 0 chr1 36703751 36703892 -160491540 + RSINE1 SINE B4 3 152 -13 4 865 248 317 85 0 chr1 36703972 36704054 -160491378 - B4 SINE B4 -1 291 203 4 865 435 233 44 33 chr1 36704079 36704205 -160491227 - PB1D9 SINE Alu -20 130 9 4 865 340 318 63 85 chr1 36704245 36704434 -160490998 - B4 SINE B4 -98 194 10 4 865 232 301 14 14 chr1 36704945 36705019 -160490413 + LTR31 LTR ERV1 269 342 -277 4 865 1097 178 88 67 chr1 36705021 36705304 -160490128 + RMER6B LTR ERVK 1 289 -172 4 865 904 44 0 0 chr1 36705264 36705377 -160490055 + B1_Mus2 SINE Alu 35 147 0 4 865 801 206 100 48 chr1 36705389 36705639 -160489793 + RMER6B LTR ERVK 199 461 0 4 865 267 246 248 24 chr1 36705639 36705764 -160489668 + LTR31 LTR ERV1 339 491 -128 4 865 510 17 0 0 chr1 36705774 36705833 -160489599 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 865 521 284 8 16 chr1 36705837 36705966 -160489466 - ID_B1 SINE B4 -16 208 81 4 865 325 295 81 52 chr1 36705945 36706081 -160489351 + LTR31 LTR ERV1 457 596 -23 4 865 304 295 25 59 chr1 36706227 36706346 -160489086 + MER58B DNA MER1_type 219 333 -8 4 865 1248 29 0 0 chr1 36706855 36706995 -160488437 - B1_Mus1 SINE Alu -8 140 1 4 865 1138 45 8 0 chr1 36706996 36707129 -160488303 - B1_Mus1 SINE Alu -13 135 2 4 865 204 243 117 72 chr1 36707140 36707251 -160488181 + L2a LINE L2 1910 2025 -1394 4 865 462 254 104 0 chr1 36707442 36707576 -160487856 - B1F1 SINE Alu -1 148 1 4 865 1563 181 109 31 chr1 36707754 36707881 -160487551 - ORR1C1 LTR MaLR 0 378 230 4 865 212 77 26 0 chr1 36707881 36707920 -160487512 + (CAGG)n Simple_repeat Simple_repeat 3 42 0 4 865 1563 181 109 31 chr1 36707920 36708141 -160487291 - ORR1C1 LTR MaLR -149 229 3 4 865 303 198 81 42 chr1 36708142 36708232 -160487200 + B1_Mus1 SINE Alu 18 120 0 4 865 202 217 48 32 chr1 36708241 36708303 -160487129 + L2a LINE L2 2525 2587 -832 4 865 22 0 0 0 chr1 36708589 36708611 -160486821 + GC_rich Low_complexity Low_complexity 1 22 0 4 865 951 263 181 33 chr1 36708673 36709094 -160486338 + MER21B LTR ERV1 370 852 -11 4 865 188 299 116 16 chr1 36709268 36709397 -160486035 + L2a LINE L2 3103 3244 -182 4 865 322 243 157 0 chr1 36709649 36709719 -160485713 + ID4_ SINE ID 3 83 0 4 865 230 249 68 58 chr1 36709786 36709869 -160485563 + MLT1A1 LTR MaLR 218 347 -61 4 865 849 163 31 0 chr1 36709872 36710001 -160485431 + B1_Mur3 SINE Alu 1 133 -16 4 865 254 86 0 0 chr1 36710114 36710149 -160485283 - ORR1C2 LTR MaLR -23 361 327 4 865 654 132 118 104 chr1 36710153 36710297 -160485135 - B1_Mus1 SINE Alu -1 147 2 4 865 1511 121 80 165 chr1 36710297 36710672 -160484760 - ORR1C2 LTR MaLR -41 343 1 4 865 1201 139 23 171 chr1 36710672 36710865 -160484567 - ORR1C2-int LTR MaLR 0 1509 1323 4 865 982 113 0 27 chr1 36710865 36711011 -160484421 + B1_Mur4 SINE Alu 2 143 -7 4 865 1201 139 23 171 chr1 36711011 36711116 -160484316 - ORR1C2-int LTR MaLR -187 1322 1256 4 865 1439 211 199 67 chr1 36711116 36711599 -160483833 + MT2B LTR ERVL 3 561 -40 4 865 207 0 0 0 chr1 36711599 36711622 -160483810 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 865 1439 211 199 67 chr1 36711622 36711660 -160483772 + MT2B LTR ERVL 562 593 -8 4 865 4260 238 63 19 chr1 36711661 36712742 -160482690 - ORR1C2-int LTR MaLR -241 1129 1 4 865 1605 137 197 0 chr1 36712743 36713058 -160482374 - ORR1C2 LTR MaLR -7 377 1 4 865 1136 55 0 20 chr1 36713428 36713577 -160481855 + B1_Mm SINE Alu 2 147 0 4 865 180 0 0 0 chr1 36713577 36713597 -160481835 + (A)n Simple_repeat Simple_repeat 1 20 0 4 865 24 0 0 0 chr1 36714335 36714359 -160481073 + GC_rich Low_complexity Low_complexity 1 24 0 4 865 416 283 86 40 chr1 36714553 36714704 -160480728 + MLT1A1 LTR MaLR 247 404 -4 4 865 187 54 71 119 chr1 36715433 36715475 -160479957 + L2 LINE L2 9 48 -3371 4 865 382 41 0 0 chr1 36716400 36716449 -160478983 - B1_Mm SINE Alu 0 147 99 4 865 267 234 18 26 chr1 36716703 36716817 -160478615 + (TATG)n Simple_repeat Simple_repeat 4 116 0 4 865 676 126 81 0 chr1 36716866 36716977 -160478455 - PB1D9 SINE Alu 0 120 1 4 865 183 80 0 0 chr1 36718399 36718424 -160477008 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 865 1278 28 0 0 chr1 36718512 36718654 -160476778 + B1_Mm SINE Alu 1 142 -5 4 865 261 75 0 0 chr1 36718655 36718695 -160476737 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 4 865 263 309 38 105 chr1 36719028 36719049 -160476383 + MT2B LTR ERVL 143 156 -445 4 865 572 161 11 0 chr1 36719049 36719142 -160476290 + B1_Mur3 SINE Alu 1 94 -55 4 865 455 356 6 63 chr1 36719269 36719443 -160475989 + RSINE1 SINE B4 2 165 0 4 865 389 20 20 0 chr1 36719451 36719501 -160475931 + (TAA)n Simple_repeat Simple_repeat 1 51 0 4 865 1495 73 5 0 chr1 36719523 36719715 -160475717 - B2_Mm1a SINE B2 0 193 1 4 865 887 133 15 15 chr1 36719721 36719858 -160475574 - B1_Mur2 SINE Alu -1 148 12 4 865 448 242 84 108 chr1 36719726 36719893 -160475539 - B4 SINE B4 -72 220 58 4 865 336 333 10 0 chr1 36720063 36720165 -160475267 + PB1 SINE Alu 1 103 -24 4 865 701 23 11 0 chr1 36720165 36720252 -160475180 + (GAGAA)n Simple_repeat Simple_repeat 4 91 0 4 865 757 201 15 122 chr1 36720252 36720456 -160474976 + B3A SINE B2 1 182 -16 5 865 24 32 0 0 chr1 36720462 36720493 -160474939 + AT_rich Low_complexity Low_complexity 1 31 0 5 865 581 188 111 15 chr1 36720505 36720640 -160474792 + B1_Mur1 SINE Alu 1 148 -1 5 865 1177 65 0 0 chr1 36720922 36721061 -160474371 + B1_Mus1 SINE Alu 1 139 -9 5 865 234 0 0 0 chr1 36721071 36721097 -160474335 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 5 865 491 243 19 19 chr1 36721582 36721687 -160473745 + RSINE1 SINE B4 3 107 -58 5 865 502 230 100 32 chr1 36721683 36721837 -160473595 - B3A SINE B2 -52 164 1 5 865 402 288 39 16 chr1 36721866 36721993 -160473439 + ID_B1 SINE B4 89 218 -6 5 865 219 254 34 0 chr1 36721940 36721999 -160473433 + PB1D10 SINE Alu 57 117 0 5 865 2039 117 101 14 chr1 36722650 36723005 -160472427 + ORR1B1 LTR MaLR 1 386 -8 5 865 445 273 202 37 chr1 36723013 36723250 -160472182 + B4A SINE B4 3 278 -14 5 865 1340 45 78 6 chr1 36723266 36723446 -160471986 + B2_Mm2 SINE B2 2 194 -1 5 865 1247 54 0 0 chr1 36723446 36723593 -160471839 + B1_Mus1 SINE Alu 1 148 0 5 865 297 0 0 0 chr1 36723701 36723734 -160471698 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 865 226 324 14 14 chr1 36723737 36723809 -160471623 + B4A SINE B4 215 286 -6 5 865 527 234 102 18 chr1 36724039 36724204 -160471228 + ORR1C2 LTR MaLR 169 348 -30 5 865 264 30 0 0 chr1 36724749 36724782 -160470650 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 865 231 114 0 0 chr1 36724782 36724826 -160470606 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 5 865 189 0 0 0 chr1 36724947 36724968 -160470464 + (A)n Simple_repeat Simple_repeat 1 21 0 5 865 1505 23 51 0 chr1 36725073 36725249 -160470183 + B2_Mm1a SINE B2 2 186 -7 5 865 323 219 0 14 chr1 36725250 36725324 -160470108 + MYSERV16_I-int LTR ERVK 1143 1215 -1111 5 865 342 195 22 44 chr1 36725355 36725446 -160469986 - B1_Mur4 SINE Alu 0 150 62 5 865 465 44 14 81 chr1 36725420 36725494 -160469938 + B1_Mus2 SINE Alu 72 140 -7 5 865 423 0 0 0 chr1 36725500 36725547 -160469885 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 865 520 316 16 92 chr1 36725748 36725933 -160469499 - ID_B1 SINE B4 0 224 54 5 865 296 194 326 0 chr1 36725934 36726063 -160469369 + ORR1A3 LTR MaLR 3 173 -153 5 865 1093 237 5 0 chr1 36726092 36726307 -160469125 - B3 SINE B2 0 216 1 5 865 860 34 223 16 chr1 36726376 36726497 -160468935 - B1_Mus2 SINE Alu 0 147 2 5 865 278 274 14 14 chr1 36726559 36726633 -160468799 + ID4_ SINE ID 8 81 -2 5 865 317 211 221 0 chr1 36726627 36726722 -160468710 - MTC LTR MaLR -59 362 247 5 865 508 204 88 0 chr1 36726716 36726829 -160468603 - MTC LTR MaLR -293 128 6 5 865 1376 77 16 0 chr1 36726886 36727069 -160468363 + B2_Mm2 SINE B2 1 186 -9 5 865 671 235 153 21 chr1 36727086 36727341 -160468091 - MTD LTR MaLR -45 374 22 5 865 348 236 62 39 chr1 36727468 36727596 -160467836 + L1M4 LINE L1 2418 2548 -3598 5 865 298 286 13 0 chr1 36727612 36727689 -160467743 + ID4 SINE ID 6 83 0 5 865 231 325 42 133 chr1 36727689 36727757 -160467675 + ID_B1 SINE B4 6 224 0 5 865 342 223 52 21 chr1 36727757 36727853 -160467579 + B1F SINE Alu 49 147 -2 5 865 1128 82 0 13 chr1 36727855 36728004 -160467428 + B1_Mus1 SINE Alu 1 147 -1 5 865 219 125 0 0 chr1 36728004 36728044 -160467388 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 865 272 288 132 36 chr1 36728068 36728151 -160467281 + B3A SINE B2 69 159 -39 5 865 912 254 76 90 chr1 36728153 36728390 -160467042 + ORR1D2 LTR MaLR 21 275 -95 5 865 216 0 0 0 chr1 36728390 36728414 -160467018 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 865 912 254 76 90 chr1 36728414 36728531 -160466901 + ORR1D2 LTR MaLR 276 370 0 5 865 189 0 0 0 chr1 36728546 36728567 -160466865 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 5 865 1148 49 0 40 chr1 36728568 36728717 -160466715 - B1_Mus1 SINE Alu -1 147 5 5 865 191 114 29 0 chr1 36728735 36728770 -160466662 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 5 865 182 67 65 22 chr1 36728769 36728815 -160466617 + GA-rich Low_complexity Low_complexity 2 49 0 5 865 215 111 0 0 chr1 36728911 36728947 -160466485 - B2_Mm2 SINE B2 -99 96 61 5 865 1242 63 6 0 chr1 36728981 36729140 -160466292 - B2_Mm1t SINE B2 -33 160 1 5 865 253 118 24 8 chr1 36729146 36729197 -160466235 - B1F SINE Alu -1 148 67 5 865 963 214 19 19 chr1 36729247 36729452 -160465980 + B3 SINE B2 2 206 -10 5 865 183 42 0 0 chr1 36729750 36729774 -160465658 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 5 865 288 238 80 45 chr1 36730334 36730422 -160465010 - RSINE1 SINE B4 -6 159 69 5 865 1224 238 164 16 chr1 36730426 36730573 -160464859 - MT2A LTR ERVL 0 533 376 5 865 884 81 163 0 chr1 36730573 36730696 -160464736 + B1_Mus1 SINE Alu 1 143 -5 5 865 261 0 0 0 chr1 36730701 36730730 -160464702 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 865 1224 238 164 16 chr1 36730730 36730961 -160464471 - MT2A LTR ERVL -169 364 93 5 865 13968 154 49 56 chr1 36731169 36731332 -160464100 - MERVL_2A-int LTR ERVL -155 5606 5426 5 865 1212 41 7 0 chr1 36731332 36731478 -160463954 - B1_Mus1 SINE Alu -1 147 1 5 865 13968 154 49 56 chr1 36731478 36731857 -160463575 - MERVL_2A-int LTR ERVL -336 5425 5037 5 865 421 199 115 42 chr1 36731857 36731965 -160463467 + PB1D9 SINE Alu 5 119 -1 5 865 13968 154 49 56 chr1 36731965 36734050 -160461382 - MERVL_2A-int LTR ERVL -336 5036 2890 5 865 3257 145 114 3 chr1 36734052 36734668 -160460764 - MERVL_2A-int LTR ERVL -4337 1424 741 5 865 278 203 46 15 chr1 36734679 36734744 -160460688 - MT2A LTR ERVL -382 151 85 5 865 1143 103 0 0 chr1 36734755 36734901 -160460531 + B1_Mus1 SINE Alu 3 148 0 5 865 1272 84 25 45 chr1 36734983 36735182 -160460250 - B2_Mm2 SINE B2 0 195 1 5 865 446 218 50 0 chr1 36735184 36735285 -160460147 - MT2A LTR ERVL -427 106 1 5 865 431 141 0 0 chr1 36735287 36735351 -160460081 - RSINE1 SINE B4 -99 66 3 5 865 24 32 0 0 chr1 36735506 36735537 -160459895 + AT_rich Low_complexity Low_complexity 1 31 0 5 865 738 156 102 0 chr1 36735556 36735684 -160459748 - B1_Mus2 SINE Alu -6 141 1 5 865 229 250 22 43 chr1 36735688 36735780 -160459652 - L1M5 LINE L1 -251 5913 5824 5 865 811 170 6 81 chr1 36736045 36736205 -160459227 - B1_Mur3 SINE Alu 0 149 2 5 865 1053 103 14 0 chr1 36736394 36736540 -160458892 + B1_Mus1 SINE Alu 1 148 0 5 865 227 246 35 0 chr1 36736563 36736620 -160458812 - B1F1 SINE Alu -90 59 1 5 865 395 338 53 27 chr1 36736738 36736991 -160458441 - L1MC4 LINE L1 -607 7435 7160 5 865 420 299 51 7 chr1 36737091 36737229 -160458203 + RSINE1 SINE B4 1 144 -21 5 865 618 172 19 99 chr1 36737357 36737518 -160457914 + B1_Mur2 SINE Alu 1 148 -1 5 865 681 287 12 23 chr1 36738005 36738176 -160457256 + B3A SINE B2 2 170 -28 5 865 498 17 0 0 chr1 36738204 36738263 -160457169 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 865 397 192 60 103 chr1 36740800 36740916 -160454516 - PB1 SINE Alu -7 120 3 5 865 331 167 152 0 chr1 36741507 36741573 -160453859 - B1F SINE Alu -33 116 41 5 865 927 123 0 7 chr1 36741587 36741726 -160453706 - B2_Mm2 SINE B2 -57 138 1 5 865 439 93 324 27 chr1 36742422 36742533 -160452899 - B2_Mm2 SINE B2 -5 190 47 5 865 1228 48 7 0 chr1 36742608 36742754 -160452678 - B1_Mus1 SINE Alu 0 148 2 5 865 1249 99 12 0 chr1 36742756 36742927 -160452505 - B2_Mm1t SINE B2 -19 174 2 5 865 1215 112 32 5 chr1 36743045 36743234 -160452198 - B2_Mm2 SINE B2 0 195 2 5 865 381 95 0 0 chr1 36743300 36743363 -160452069 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 865 4457 75 21 2 chr1 36743522 36744095 -160451337 - MT2B2 LTR ERVL 0 584 1 5 865 216 97 0 0 chr1 36744286 36744317 -160451115 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 5 865 518 196 33 0 chr1 36744339 36744431 -160451001 - RSINE1 SINE B4 -13 152 58 5 865 279 309 27 0 chr1 36744565 36744675 -160450757 + L1MA5 LINE L1 5830 5942 -358 5 865 1844 102 98 3 chr1 36744695 36744980 -160450452 + ORR1A3 LTR MaLR 7 318 -8 5 865 566 280 0 8 chr1 36745098 36745224 -160450208 - B1_Mur1 SINE Alu -16 133 9 5 865 22 0 0 0 chr1 36745237 36745259 -160450173 + AT_rich Low_complexity Low_complexity 1 22 0 5 865 338 248 89 0 chr1 36745590 36745691 -160449741 + PB1D7 SINE Alu 2 111 -9 5 865 924 123 243 32 chr1 36745693 36745878 -160449554 - URR1A DNA MER1_type -2 224 1 5 865 226 211 81 40 chr1 36745892 36745966 -160449466 + ID4_ SINE ID 2 78 -5 5 865 2234 148 8 0 chr1 36746505 36746856 -160448576 + ORR1C1 LTR MaLR 10 363 -15 5 865 586 184 111 8 chr1 36747769 36747895 -160447537 + B1_Mur1 SINE Alu 11 149 0 5 865 675 219 28 28 chr1 36749566 36749707 -160445725 - B3A SINE B2 -56 142 2 5 865 187 233 21 85 chr1 36749736 36749783 -160445649 - L2a LINE L2 -28 3398 3355 5 865 25 0 0 0 chr1 36750258 36750283 -160445149 + AT_rich Low_complexity Low_complexity 1 25 0 5 865 25 0 0 0 chr1 36750351 36750376 -160445056 + AT_rich Low_complexity Low_complexity 1 25 0 5 865 709 108 129 72 chr1 36750395 36750534 -160444898 - B1_Mus1 SINE Alu -1 147 1 5 865 1076 51 29 7 chr1 36751389 36751527 -160443905 + B1_Mm SINE Alu 1 141 -6 5 865 328 306 0 114 chr1 36751809 36751949 -160443483 + MLT1D LTR MaLR 1 124 -503 5 865 622 217 70 0 chr1 36751978 36752107 -160443325 + RSINE1 SINE B4 17 154 -11 5 865 610 249 161 30 chr1 36752113 36752312 -160443120 + MLT1D LTR MaLR 281 505 0 5 865 358 306 113 0 chr1 36752346 36752470 -160442962 + MER5B DNA MER1_type 16 153 -25 6 865 222 37 0 0 chr1 36752674 36752701 -160442731 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6 865 516 160 117 0 chr1 36752723 36752817 -160442615 - B1_Mur1 SINE Alu -36 113 9 6 865 241 226 15 46 chr1 36752765 36752830 -160442602 - B4 SINE B4 -147 145 83 6 865 417 310 60 27 chr1 36752867 36753016 -160442416 - RSINE1 SINE B4 0 165 12 6 865 409 275 33 0 chr1 36753182 36753273 -160442159 - PB1D10 SINE Alu -23 94 1 6 865 1287 259 109 23 chr1 36753388 36753867 -160441565 - Lx8 LINE L1 -137 7336 6817 6 865 941 215 112 4 chr1 36753963 36754239 -160441193 - Lx8 LINE L1 -828 6645 6340 6 865 218 239 22 0 chr1 36754297 36754343 -160441089 - B4 SINE B4 -243 49 3 6 865 335 299 51 0 chr1 36754508 36754625 -160440807 - L1MC4a LINE L1 -1101 6781 6659 6 865 435 278 18 27 chr1 36757741 36757852 -160437580 - PB1D10 SINE Alu -1 116 7 6 865 21 0 0 0 chr1 36758492 36758513 -160436919 + GC_rich Low_complexity Low_complexity 1 21 0 6 865 392 55 18 0 chr1 36759193 36759248 -160436184 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 865 937 201 151 105 chr1 36759828 36760200 -160435232 + RMER4A LTR ERVK 15 403 -63 6 865 898 173 0 0 chr1 36760785 36760924 -160434508 + B1_Mur3 SINE Alu 1 139 -10 6 865 719 255 56 45 chr1 36761490 36761757 -160433675 + RMER15-int LTR ERVL 2233 2502 -2497 6 865 523 207 81 0 chr1 36761762 36761873 -160433559 + MTC LTR MaLR 1 120 -301 6 865 650 266 59 36 chr1 36761972 36762225 -160433207 + RMER15-int LTR ERVL 4512 4770 -229 6 865 276 253 38 0 chr1 36762358 36762398 -160433034 + RMER15-int LTR ERVL 4898 4939 -60 6 865 396 0 0 0 chr1 36762398 36762442 -160432990 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 865 276 253 38 0 chr1 36762442 36762480 -160432952 + RMER15-int LTR ERVL 4940 4978 -21 6 865 269 202 141 12 chr1 36762735 36762820 -160432612 + RMER15 LTR ERVL 415 510 -65 6 865 354 253 9 112 chr1 36763351 36763458 -160431974 - ID_B1 SINE B4 -19 205 110 6 865 327 25 0 0 chr1 36763574 36763614 -160431818 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 865 235 319 50 83 chr1 36767117 36767298 -160428134 - MT2B LTR ERVL -257 344 170 6 865 505 250 74 0 chr1 36767194 36767302 -160428130 - PB1D10 SINE Alu 0 117 2 6 865 315 276 103 0 chr1 36767345 36767432 -160428000 - L1M4 LINE L1 -1094 5052 4957 6 865 356 257 84 19 chr1 36767614 36767721 -160427711 + PB1D9 SINE Alu 1 114 -6 6 865 503 53 13 0 chr1 36767722 36767797 -160427635 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 865 255 250 0 120 chr1 36767975 36768075 -160427357 - L1M4 LINE L1 -2582 3564 3477 6 865 189 107 0 0 chr1 36768126 36768154 -160427278 + (TCC)n Simple_repeat Simple_repeat 3 30 0 6 865 247 295 133 31 chr1 36768219 36768415 -160427017 - L1M4 LINE L1 -2695 3451 3236 6 865 885 173 144 11 chr1 36768423 36768604 -160426828 + URR1B DNA MER1_type 1 205 -20 6 865 1250 61 0 0 chr1 36768678 36768825 -160426607 - B1_Mm SINE Alu 0 147 1 6 865 345 312 86 0 chr1 36768825 36768953 -160426479 + MER58C DNA MER1_type 76 214 -1 6 865 617 263 44 0 chr1 36769015 36769152 -160426280 + RSINE1 SINE B4 3 145 -20 6 865 227 182 71 83 chr1 36769158 36769242 -160426190 + B2_Mm2 SINE B2 112 194 -1 6 865 287 353 19 38 chr1 36769309 36769415 -160426017 + B3A SINE B2 71 174 -24 6 865 21 36 0 0 chr1 36769555 36769583 -160425849 + AT_rich Low_complexity Low_complexity 1 28 0 6 865 190 27 79 26 chr1 36769625 36769663 -160425769 + (TTTTTA)n Simple_repeat Simple_repeat 4 43 0 6 865 1202 48 7 0 chr1 36769665 36769810 -160425622 - B1_Mus2 SINE Alu 0 147 2 6 865 25 83 0 0 chr1 36769839 36769899 -160425533 + AT_rich Low_complexity Low_complexity 1 60 0 6 865 626 112 0 0 chr1 36770255 36770344 -160425088 + B1_Mus1 SINE Alu 1 89 -59 6 865 260 341 109 85 chr1 36770347 36770497 -160424935 - ORR1E LTR MaLR -63 296 154 6 865 2275 126 16 39 chr1 36770497 36770878 -160424554 - ORR1C1 LTR MaLR -4 374 3 6 865 260 341 109 85 chr1 36770878 36770974 -160424458 - ORR1E LTR MaLR -206 153 44 6 865 272 284 24 36 chr1 36771035 36771119 -160424313 - ID2 SINE ID 0 83 1 6 865 296 321 78 83 chr1 36771818 36771872 -160423560 + MT2B LTR ERVL 101 254 -347 6 865 598 148 92 34 chr1 36771872 36771991 -160423441 + B1_Mur4 SINE Alu 1 126 -24 6 865 1960 295 70 18 chr1 36772018 36772901 -160422531 - Lx8 LINE L1 -11 7462 6534 6 865 617 264 16 0 chr1 36772905 36773071 -160422361 + B3 SINE B2 3 178 -20 6 865 500 257 23 142 chr1 36773078 36773218 -160422214 - Lx8 LINE L1 -950 6523 6379 6 865 1220 68 0 0 chr1 36773218 36773365 -160422067 + B1_Mus2 SINE Alu 1 147 0 6 865 500 257 23 142 chr1 36773365 36773442 -160421990 - Lx8 LINE L1 -1095 6378 6332 6 865 458 266 187 22 chr1 36773485 36773703 -160421729 - MER44C DNA MER2_type -11 722 469 6 865 525 338 37 19 chr1 36773694 36773908 -160421524 + MER44C DNA MER2_type 101 318 -415 6 865 498 215 72 36 chr1 36773928 36774039 -160421393 - RSINE1 SINE B4 -29 136 22 6 865 832 69 60 0 chr1 36774231 36774347 -160421085 + B1_Mm SINE Alu 2 124 -23 6 865 345 256 79 26 chr1 36774342 36774531 -160420901 - RMER17C LTR ERVK -211 199 1 6 865 417 285 179 0 chr1 36775270 36775449 -160419983 + MER44C DNA MER2_type 507 717 -16 6 865 221 216 98 0 chr1 36775480 36775531 -160419901 - PB1D10 SINE Alu 0 117 62 6 865 469 297 38 23 chr1 36775487 36775618 -160419814 - ID_B1 SINE B4 -7 217 85 6 865 385 291 0 0 chr1 36776095 36776174 -160419258 - ID2 SINE ID -3 80 2 6 865 710 155 17 25 chr1 36776189 36776308 -160419124 - PB1D9 SINE Alu -1 119 2 6 865 244 219 45 30 chr1 36776706 36776772 -160418660 - MLT1L LTR MaLR -207 403 337 6 865 31 0 0 0 chr1 36776811 36776842 -160418590 + AT_rich Low_complexity Low_complexity 1 31 0 6 865 479 246 103 0 chr1 36776844 36776970 -160418462 + B1_Mur1 SINE Alu 1 139 -10 6 865 6039 87 59 3 chr1 36777627 36778473 -160416959 - RLTR13B1 LTR ERVK 0 893 1 6 865 398 240 78 29 chr1 36778695 36778798 -160416634 - ORR1E LTR MaLR -72 287 180 6 865 581 219 0 17 chr1 36778798 36778979 -160416453 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 865 781 278 24 54 chr1 36778980 36779185 -160416247 - ORR1E LTR MaLR -156 203 5 6 865 261 289 12 0 chr1 36779300 36779383 -160416049 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 865 373 275 84 36 chr1 36779714 36779755 -160415677 + CYRA11_Mm Unknown Y-chromosome 127 175 -442 6 865 766 133 39 8 chr1 36779755 36779884 -160415548 - URR1B DNA MER1_type 0 225 93 6 865 1205 79 0 0 chr1 36779884 36780036 -160415396 + B2_Mm2 SINE B2 1 152 -43 6 865 415 257 135 35 chr1 36781379 36781520 -160413912 - RSINE1 SINE B4 -8 157 3 6 865 1236 243 101 42 chr1 36781590 36781947 -160413485 + MTE2a LTR MaLR 2 379 0 6 865 2258 16 8 0 chr1 36782859 36783114 -160412318 - L1Md_F2 LINE L1 -1 6581 6325 6 865 396 0 0 0 chr1 36783415 36783459 -160411973 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 865 314 294 0 0 chr1 36783467 36783552 -160411880 - Lx7 LINE L1 -395 7301 7217 6 865 293 122 0 0 chr1 36783553 36783602 -160411830 + B1_Mur4 SINE Alu 102 150 0 6 865 1113 89 0 0 chr1 36783607 36784083 -160411349 + (GGA)n Simple_repeat Simple_repeat 1 476 0 6 865 1089 64 43 0 chr1 36784125 36784266 -160411166 + B1_Mus1 SINE Alu 2 148 0 6 865 1339 282 40 106 chr1 36784280 36784676 -160410756 - Lx7 LINE L1 -472 7224 6838 6 865 1138 199 19 9 chr1 36784676 36784889 -160410543 + B3 SINE B2 2 216 0 6 865 1339 282 40 106 chr1 36784889 36785047 -160410385 - Lx7 LINE L1 -859 6837 6707 6 865 1059 180 11 0 chr1 36785050 36785228 -160410204 - URR1B DNA MER1_type -45 180 1 6 865 1438 302 30 22 chr1 36785236 36785744 -160409688 - Lx7 LINE L1 -976 6720 6209 6 865 403 317 101 30 chr1 36785963 36786132 -160409300 + B3A SINE B2 2 182 -16 6 865 735 206 0 0 chr1 36786132 36786312 -160409120 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 865 331 340 44 19 chr1 36786348 36786507 -160408925 + RSINE1 SINE B4 3 165 0 6 865 246 272 87 14 chr1 36786692 36786830 -160408602 + L1M4b LINE L1 1335 1482 -5526 6 865 431 267 69 55 chr1 36787169 36787219 -160408213 + L1M4b LINE L1 1613 1660 -5674 6 865 1006 133 0 26 chr1 36787219 36787364 -160408068 + B1_Mur4 SINE Alu 1 141 -9 6 865 234 0 0 0 chr1 36787364 36787390 -160408042 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 865 431 295 80 62 chr1 36787398 36787705 -160407727 + L1M4b LINE L1 1661 2015 -4993 6 865 284 183 127 0 chr1 36787727 36787798 -160407634 - Lx5 LINE L1 -347 6703 6624 6 865 4050 275 70 20 chr1 36787924 36789299 -160406133 + Lx7 LINE L1 5862 7306 -390 6 865 225 65 0 0 chr1 36789303 36789334 -160406098 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 865 24 32 0 0 chr1 36789390 36789421 -160406011 + AT_rich Low_complexity Low_complexity 1 31 0 6 865 966 96 89 0 chr1 36789570 36789705 -160405727 + B1_Mus2 SINE Alu 1 147 0 6 865 204 40 0 0 chr1 36789705 36789730 -160405702 + (A)n Simple_repeat Simple_repeat 1 25 0 6 865 351 100 28 14 chr1 36789766 36789837 -160405595 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 865 1271 184 14 0 chr1 36790027 36790239 -160405193 - B3 SINE B2 0 216 2 6 865 418 315 23 23 chr1 36791087 36791217 -160404215 + ID_B1 SINE B4 95 224 0 6 865 661 233 18 25 chr1 36791221 36791384 -160404048 + B3A SINE B2 2 163 -35 6 865 2398 110 11 9 chr1 36791440 36791788 -160403644 - ORR1C1 LTR MaLR -8 370 22 6 865 476 185 0 0 chr1 36791857 36791938 -160403494 - B1_Mus1 SINE Alu -67 81 1 6 865 348 338 107 74 chr1 36792203 36792539 -160402893 - L1M5 LINE L1 -1200 4946 4600 6 865 188 143 24 0 chr1 36792665 36792707 -160402725 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 6 865 267 213 0 0 chr1 36792704 36792779 -160402653 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 6 865 1355 79 10 10 chr1 36792876 36793038 -160402394 + B2_Mm1a SINE B2 1 160 -33 6 865 315 0 0 0 chr1 36793038 36793073 -160402359 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 865 1355 79 10 10 chr1 36793073 36793102 -160402330 + B2_Mm1a SINE B2 161 191 -2 6 865 1048 224 177 38 chr1 36793140 36793507 -160401925 + MTD LTR MaLR 1 418 -1 6 865 491 0 17 0 chr1 36793760 36793819 -160401613 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 865 664 301 110 14 chr1 36795000 36795209 -160400223 + B4A SINE B4 4 232 -60 6 865 393 291 0 0 chr1 36795210 36795289 -160400143 + B3A SINE B2 5 83 -115 6 865 1028 197 10 15 chr1 36795292 36795493 -160399939 - B3 SINE B2 -2 214 15 6 865 1201 214 0 0 chr1 36795524 36795734 -160399698 - B3 SINE B2 0 216 7 7 865 222 37 0 0 chr1 36795755 36795782 -160399650 + (TTATG)n Simple_repeat Simple_repeat 2 28 0 7 865 198 0 0 0 chr1 36795783 36795805 -160399627 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 865 366 23 0 0 chr1 36795805 36795847 -160399585 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 865 522 276 0 0 chr1 36795868 36795973 -160399459 - RSINE1 SINE B4 -59 106 2 7 865 567 270 104 30 chr1 36795980 36796182 -160399250 - B4 SINE B4 -70 222 6 7 865 1457 66 33 0 chr1 36796399 36796581 -160398851 + B2_Mm2 SINE B2 2 189 -6 7 865 194 244 143 71 chr1 36797005 36797089 -160398343 - MIRm SINE MIR -170 106 17 7 865 198 295 24 71 chr1 36797169 36797253 -160398179 - MIRc SINE MIR -79 189 110 7 865 359 252 154 0 chr1 36797273 36797396 -160398036 + MER5A DNA MER1_type 16 157 -32 7 865 370 299 54 122 chr1 36797545 36797766 -160397666 + B4A SINE B4 27 232 -60 7 865 255 271 0 0 chr1 36797763 36797811 -160397621 + RSINE1 SINE B4 108 155 -10 7 865 269 307 11 11 chr1 36797825 36797914 -160397518 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 865 918 166 8 0 chr1 36798145 36798378 -160397054 + GA-rich Low_complexity Low_complexity 1 234 0 7 865 1155 119 0 0 chr1 36798385 36798962 -160396470 + (GGA)n Simple_repeat Simple_repeat 1 577 0 7 865 449 99 56 0 chr1 36799372 36799443 -160395989 + PB1D10 SINE Alu 43 117 0 7 865 320 0 25 0 chr1 36799528 36799568 -160395864 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 865 383 312 61 23 chr1 36799807 36799938 -160395494 + RSINE1 SINE B4 30 165 0 7 865 381 285 78 113 chr1 36800488 36800683 -160394749 - MTEb LTR MaLR -111 268 77 7 865 258 32 0 0 chr1 36800683 36800714 -160394718 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 865 381 285 78 113 chr1 36800714 36800775 -160394657 - MTEb LTR MaLR -303 76 21 7 865 276 281 0 0 chr1 36800928 36800992 -160394440 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 7 865 466 273 132 7 chr1 36801560 36801704 -160393728 + B3 SINE B2 48 209 -7 7 865 1112 72 0 0 chr1 36801718 36801856 -160393576 + B1_Mus1 SINE Alu 2 139 -9 7 865 885 178 0 0 chr1 36802204 36802339 -160393093 - B1_Mus2 SINE Alu -12 135 1 7 865 328 200 15 15 chr1 36802489 36802555 -160392877 - MamRep38 DNA hAT -140 155 90 7 865 230 100 40 0 chr1 36802983 36803033 -160392399 + (TGGGGG)n Simple_repeat Simple_repeat 2 53 0 7 865 400 319 34 0 chr1 36805070 36805189 -160390243 + ORR1E LTR MaLR 33 155 -204 7 865 317 263 88 29 chr1 36805288 36805390 -160390042 - B3A SINE B2 -83 115 8 7 865 679 282 43 103 chr1 36805386 36805754 -160389678 - MTEa LTR MaLR -8 371 26 7 865 1199 126 115 5 chr1 36805755 36805955 -160389477 - URR1A DNA MER1_type 0 226 5 7 865 585 207 59 0 chr1 36805971 36806106 -160389326 - ORR1D2 LTR MaLR 0 370 228 7 865 916 303 81 45 chr1 36806101 36806436 -160388996 - ORR1D2 LTR MaLR -23 347 1 7 865 632 236 6 0 chr1 36806628 36806806 -160388626 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 865 235 193 24 24 chr1 36806817 36806847 -160388585 + (TATG)n Simple_repeat Simple_repeat 1 32 0 7 865 3516 23 2 5 chr1 36806847 36807244 -160388188 + MTA_Mm LTR MaLR 1 396 0 7 865 9367 33 2 1 chr1 36807244 36808341 -160387091 + MTA_Mm-int LTR MaLR 1 1098 0 7 865 3502 25 2 5 chr1 36808341 36808738 -160386694 + MTA_Mm LTR MaLR 1 396 0 7 865 764 164 5 39 chr1 36808738 36808981 -160386451 + (TATG)n Simple_repeat Simple_repeat 1 234 0 7 865 606 203 32 41 chr1 36809003 36809126 -160386306 + MER20 DNA MER1_type 98 219 0 7 865 399 244 0 12 chr1 36809566 36809625 -160385807 - ID4 SINE ID -1 82 24 7 865 441 0 0 0 chr1 36809625 36809674 -160385758 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 865 399 244 0 12 chr1 36809674 36809697 -160385735 - ID4 SINE ID -60 23 1 7 865 2299 123 93 3 chr1 36809780 36810147 -160385285 - MTC LTR MaLR -21 400 1 7 865 281 216 27 13 chr1 36810367 36810442 -160384990 - ERVL-B4-int LTR ERVL -2565 3149 3074 7 865 349 322 74 23 chr1 36810801 36810872 -160384560 + LTR33B LTR ERVL 3 73 -430 7 865 1888 165 51 35 chr1 36810872 36811243 -160384189 - ORR1C1 LTR MaLR 0 378 2 7 865 349 322 74 23 chr1 36811243 36811346 -160384086 + LTR33B LTR ERVL 74 186 -317 7 865 2121 157 185 5 chr1 36811680 36812058 -160383374 + RLTR41 LTR ERV1 1 446 0 7 865 1113 90 69 58 chr1 36812140 36812329 -160383103 + B2_Mm2 SINE B2 1 191 -4 7 865 1122 130 0 0 chr1 36812335 36812489 -160382943 + B2_Mm2 SINE B2 1 154 -41 7 865 249 33 0 0 chr1 36812490 36812520 -160382912 + (TAA)n Simple_repeat Simple_repeat 3 32 0 7 865 225 263 156 13 chr1 36813796 36813873 -160381559 - L2b LINE L2 -27 3348 3261 7 865 396 0 0 0 chr1 36814328 36814372 -160381060 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 865 288 0 0 0 chr1 36814372 36814404 -160381028 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 865 341 222 28 0 chr1 36814818 36814890 -160380542 - ID_B1 SINE B4 -2 222 149 7 865 716 263 18 71 chr1 36814900 36814940 -160380492 - B3 SINE B2 -2 214 176 7 865 1709 169 188 0 chr1 36814940 36815189 -160380243 - RLTR23 LTR ERV1 0 430 141 7 865 252 77 0 0 chr1 36815189 36815228 -160380204 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 865 1709 169 188 0 chr1 36815228 36815340 -160380092 - RLTR23 LTR ERV1 -290 140 2 7 865 716 263 18 71 chr1 36815340 36815524 -160379908 - B3 SINE B2 -41 175 2 7 865 542 254 79 36 chr1 36815528 36815667 -160379765 - ID_B1 SINE B4 -79 145 1 7 865 187 192 57 19 chr1 36815758 36815811 -160379621 + L2a LINE L2 3107 3161 -265 7 865 1218 246 179 47 chr1 36816326 36816682 -160378750 - MT2B LTR ERVL -70 531 134 7 865 189 0 0 0 chr1 36816682 36816703 -160378729 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 7 865 1218 246 179 47 chr1 36816703 36816815 -160378617 - MT2B LTR ERVL -468 133 1 7 865 414 39 0 0 chr1 36816928 36816980 -160378452 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 865 1769 165 199 0 chr1 36818030 36818381 -160377051 + MTC LTR MaLR 1 421 0 7 865 368 234 52 59 chr1 36819560 36819696 -160375736 + MIRb SINE MIR 8 142 -126 7 865 328 253 158 0 chr1 36819921 36820016 -160375416 + MER20 DNA MER1_type 31 140 -79 7 865 196 231 0 0 chr1 36820456 36820495 -160374937 + MIRm SINE MIR 112 150 -126 7 865 254 276 0 0 chr1 36821722 36821780 -160373652 + B1F2 SINE Alu 3 60 -89 7 865 750 93 0 0 chr1 36824053 36824161 -160371271 + (GA)n Simple_repeat Simple_repeat 1 108 0 7 865 300 337 11 11 chr1 36824746 36824839 -160370593 - L1MC LINE L1 -2018 5767 5675 7 865 893 209 99 25 chr1 36824946 36825147 -160370285 + B3 SINE B2 1 216 0 7 865 572 168 144 0 chr1 36825191 36825316 -160370116 - B1F1 SINE Alu -1 148 6 7 865 429 311 70 21 chr1 36825792 36825979 -160369453 - MER82 DNA MER2_type -3 650 455 7 865 405 0 0 0 chr1 36826079 36826124 -160369308 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 865 522 229 55 0 chr1 36826181 36826290 -160369142 + ID_B1 SINE B4 81 195 -29 7 865 283 268 62 0 chr1 36826326 36826423 -160369009 - L1ME2z LINE L1 -314 6130 6028 7 865 378 189 24 48 chr1 36826449 36826702 -160368730 + (TCTA)n Simple_repeat Simple_repeat 1 246 0 7 865 370 276 11 0 chr1 36826702 36826789 -160368643 - B1F1 SINE Alu -55 94 7 7 865 1016 142 0 0 chr1 36827076 36827224 -160368208 - B1_Mus1 SINE Alu 0 148 1 7 865 288 0 0 0 chr1 36827235 36827267 -160368165 + (T)n Simple_repeat Simple_repeat 1 32 0 7 865 217 216 39 0 chr1 36829766 36829817 -160365615 + B3A SINE B2 62 114 -84 7 865 1161 36 0 21 chr1 36829875 36830015 -160365417 + B1_Mus1 SINE Alu 1 137 -11 7 865 216 0 0 0 chr1 36830015 36830039 -160365393 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 865 230 242 32 0 chr1 36830176 36830238 -160365194 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 865 317 282 13 0 chr1 36830316 36830394 -160365038 - ID4_ SINE ID 0 83 5 7 865 357 233 14 0 chr1 36830439 36830512 -160364920 + ID4_ SINE ID 1 74 -9 7 865 477 247 218 7 chr1 36830613 36830760 -160364672 - B3A SINE B2 -18 180 3 7 865 313 281 76 72 chr1 36830833 36830988 -160364444 - MLT1H LTR MaLR 0 680 431 7 108 2324 138 59 10 chr1 36831013 36831400 -160364032 - MTC LTR MaLR -5 416 11 7 866 208 243 14 14 chr1 36831641 36831712 -160363720 + G-rich Low_complexity Low_complexity 5 75 0 7 866 2362 164 52 17 chr1 36831875 36832253 -160363179 - L1_Rod LINE L1 -3504 2343 1949 7 866 1091 176 5 5 chr1 36832253 36832447 -160362985 - B2_Mm2 SINE B2 0 195 2 7 866 2362 164 52 17 chr1 36832447 36832545 -160362887 - L1_Rod LINE L1 -3899 1948 1850 7 866 907 53 18 0 chr1 36832549 36832663 -160362769 - ORR1A3 LTR MaLR -8 318 203 7 866 3697 166 94 67 chr1 36832663 36833188 -160362244 - L1_Rod LINE L1 -4270 1577 1042 7 866 1346 134 37 5 chr1 36833188 36833405 -160362027 - URR1B DNA MER1_type -1 224 1 7 866 3697 171 117 20 chr1 36833405 36833952 -160361480 - L1_Rod LINE L1 -6567 1041 437 7 866 280 306 115 7 chr1 36833961 36834109 -160361323 - L1_Rod LINE L1 -6957 215 52 7 866 255 147 29 29 chr1 36834160 36834230 -160361202 - ORR1D1 LTR MaLR -248 98 29 7 866 637 144 44 65 chr1 36834199 36834353 -160361079 - ORR1D1 LTR MaLR -248 146 3 7 866 205 118 38 38 chr1 36836403 36836456 -160358976 + G-rich Low_complexity Low_complexity 2 54 0 7 866 209 59 0 56 chr1 36836757 36836793 -160358639 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 7 866 360 77 0 0 chr1 36836816 36836868 -160358564 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 866 466 195 23 0 chr1 36836857 36837031 -160358401 + (CAGA)n Simple_repeat Simple_repeat 1 178 0 7 866 365 136 76 13 chr1 36837065 36837222 -160358210 + (CAGA)n Simple_repeat Simple_repeat 4 170 0 7 866 503 124 41 14 chr1 36837237 36837384 -160358048 + (CAGA)n Simple_repeat Simple_repeat 4 154 0 7 866 202 300 137 20 chr1 36837473 36837575 -160357857 + MIRb SINE MIR 120 233 -35 7 866 24 0 0 0 chr1 36838313 36838337 -160357095 + GC_rich Low_complexity Low_complexity 1 24 0 7 866 192 208 84 72 chr1 36839936 36840019 -160355413 + MER5B DNA MER1_type 19 102 -76 7 866 239 286 109 104 chr1 36840257 36840440 -160354992 + MLT1K LTR MaLR 112 295 -300 7 866 309 109 0 0 chr1 36840679 36840725 -160354707 + (CCTG)n Simple_repeat Simple_repeat 4 49 0 7 866 412 281 21 0 chr1 36840773 36840869 -160354563 - B3A SINE B2 -84 114 17 8 866 277 278 14 14 chr1 36840912 36840985 -160354447 + PB1D10 SINE Alu 42 114 -3 8 866 221 155 17 0 chr1 36841001 36841059 -160354373 + A-rich Low_complexity Low_complexity 2 60 0 8 866 281 260 43 91 chr1 36841186 36841313 -160354119 + MER97b DNA MER1_type? 753 876 -177 8 866 1277 62 45 6 chr1 36841313 36841490 -160353942 - B2_Mm2 SINE B2 -10 185 2 8 866 281 260 43 91 chr1 36841490 36841548 -160353884 + MER97b DNA MER1_type? 877 929 -124 8 866 182 275 0 0 chr1 36841987 36842027 -160353405 + MIR SINE MIR 93 132 -130 8 866 684 253 13 13 chr1 36842498 36842650 -160352782 - B3 SINE B2 -6 210 59 8 866 874 254 20 5 chr1 36842695 36842897 -160352535 - ID_B1 SINE B4 0 224 20 8 866 283 195 7 0 chr1 36842899 36842960 -160352472 - PB1D10 SINE Alu -22 98 35 8 866 816 234 30 40 chr1 36843356 36843556 -160351876 - B3A SINE B2 0 198 1 8 866 289 212 47 12 chr1 36843677 36843763 -160351669 + L1MB2 LINE L1 5796 5884 -287 8 866 1220 32 201 0 chr1 36843936 36844090 -160351342 - B2_Mm2 SINE B2 -9 186 2 8 866 206 213 13 26 chr1 36844162 36844239 -160351193 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 8 866 265 322 0 8 chr1 36844326 36844448 -160350984 - Lx8 LINE L1 0 7473 7353 8 866 2118 54 0 18 chr1 36844599 36844880 -160350552 - L1_Mus1 LINE L1 -270 6297 6022 8 866 455 18 18 0 chr1 36844880 36844936 -160350496 + L1_Mus1 LINE L1 6406 6462 -105 8 866 335 117 0 0 chr1 36844918 36844978 -160350454 + L1_Mus2 LINE L1 6507 6566 0 8 866 519 231 0 9 chr1 36845110 36845215 -160350217 - B3 SINE B2 -90 126 23 8 866 454 229 46 0 chr1 36845228 36845337 -160350095 - PB1D9 SINE Alu -5 115 2 8 866 353 187 272 11 chr1 36845459 36845551 -160349881 + B3A SINE B2 1 116 -82 8 866 283 136 34 0 chr1 36845586 36845645 -160349787 + CT-rich Low_complexity Low_complexity 2 62 0 8 866 190 56 56 0 chr1 36845645 36845681 -160349751 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 866 834 129 89 0 chr1 36845716 36845840 -160349592 + B1_Mur4 SINE Alu 3 137 -13 8 866 647 273 121 19 chr1 36846199 36846476 -160348956 + MTD LTR MaLR 1 286 -110 8 866 264 245 235 0 chr1 36846454 36846556 -160348876 + MTE2a LTR MaLR 6 131 -248 8 866 234 0 0 0 chr1 36847070 36847096 -160348336 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 8 866 188 290 191 71 chr1 36847120 36847261 -160348171 + MIRc SINE MIR 45 202 -66 8 866 375 246 257 14 chr1 36847355 36847503 -160347929 - B3A SINE B2 -13 185 2 8 866 1492 44 0 0 chr1 36848128 36848311 -160347121 + B2_Mm1a SINE B2 11 193 0 8 866 351 0 0 0 chr1 36854051 36854090 -160341342 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 866 396 0 0 0 chr1 36854561 36854605 -160340827 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 866 843 218 327 0 chr1 36854869 36855182 -160340250 + MTD LTR MaLR 3 416 -3 8 866 236 353 0 0 chr1 36856802 36856870 -160338562 - ID4_ SINE ID 0 83 16 8 866 216 0 0 0 chr1 36856960 36856984 -160338448 + (A)n Simple_repeat Simple_repeat 1 24 0 8 866 198 0 0 0 chr1 36857836 36857858 -160337574 + (A)n Simple_repeat Simple_repeat 1 22 0 8 866 212 386 106 29 chr1 36858228 36858540 -160336892 + L4 LINE RTE 960 1295 -734 8 866 406 282 33 25 chr1 36858894 36859014 -160336418 - B1F2 SINE Alu -14 135 15 8 866 201 93 36 18 chr1 36860260 36860315 -160335117 + (TGGGGG)n Simple_repeat Simple_repeat 2 57 0 8 866 2423 163 41 45 chr1 36860452 36860915 -160334517 + RMER4A LTR ERVK 6 466 0 8 866 232 254 0 0 chr1 36861396 36861451 -160333981 + CT-rich Low_complexity Low_complexity 4 58 0 8 866 210 246 123 0 chr1 36862030 36862095 -160333337 - L2a LINE L2 -50 3376 3304 8 866 189 0 0 0 chr1 36862180 36862201 -160333231 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 866 1352 60 66 0 chr1 36862416 36862598 -160332834 + B2_Mm2 SINE B2 2 195 0 8 866 1566 171 42 0 chr1 36862900 36863186 -160332246 + ORR1D1-int LTR MaLR 1072 1369 -1 8 866 1016 174 318 24 chr1 36863186 36863475 -160331957 + ORR1D1 LTR MaLR 1 374 0 8 866 225 305 27 135 chr1 36863559 36863707 -160331725 + MER46C DNA MER2_type 3 134 -204 8 866 281 299 61 10 chr1 36864148 36864246 -160331186 - PB1D7 SINE Alu 0 120 18 8 866 941 152 7 0 chr1 36864325 36864470 -160330962 - B1_Mus1 SINE Alu -1 147 2 8 866 849 231 30 15 chr1 36866003 36866201 -160329231 - B3 SINE B2 -15 201 1 8 866 1264 86 17 0 chr1 36866231 36866405 -160329027 + B2_Mm1t SINE B2 3 179 -14 8 866 276 172 0 36 chr1 36866472 36866538 -160328894 + B2_Mm2 SINE B2 48 109 -107 8 866 186 43 0 0 chr1 36866548 36866571 -160328861 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 866 183 42 0 0 chr1 36867416 36867440 -160327992 + (CACAA)n Simple_repeat Simple_repeat 4 27 0 8 866 853 174 73 18 chr1 36867979 36868143 -160327289 - B3 SINE B2 -29 187 15 8 866 323 319 49 28 chr1 36868636 36868778 -160326654 - B1F1 SINE Alu -3 146 1 8 866 21 0 0 0 chr1 36869992 36870013 -160325419 + GC_rich Low_complexity Low_complexity 1 21 0 8 866 446 236 0 41 chr1 36870537 36870634 -160324798 - PB1D9 SINE Alu -21 99 7 8 866 1196 48 0 40 chr1 36871843 36871994 -160323438 - B1_Mus2 SINE Alu -2 145 1 8 866 370 205 39 0 chr1 36873367 36873445 -160321987 - ID2 SINE ID 0 83 3 8 866 654 295 65 100 chr1 36874227 36874688 -160320744 + L1_Mur3 LINE L1 5286 5728 -569 8 866 1659 32 0 0 chr1 36876486 36876673 -160318759 + B2_Mm1a SINE B2 2 188 -5 8 866 457 283 125 22 chr1 36876869 36877053 -160318379 - B3 SINE B2 -13 203 1 8 866 1054 102 7 26 chr1 36877152 36877303 -160318129 + B1_Mus1 SINE Alu 1 148 0 8 866 526 212 76 122 chr1 36878438 36878610 -160316822 - RSINE1 SINE B4 0 165 2 8 866 25 31 0 0 chr1 36878730 36878762 -160316670 + AT_rich Low_complexity Low_complexity 1 32 0 8 866 1396 60 11 16 chr1 36878884 36879071 -160316361 - B2_Mm1a SINE B2 -6 187 2 8 866 309 145 0 52 chr1 36879297 36879355 -160316077 - B3A SINE B2 -76 122 68 8 866 1095 199 43 14 chr1 36880510 36880719 -160314713 - B3 SINE B2 0 216 2 8 866 387 238 53 16 chr1 36881034 36881137 -160314295 + B1F SINE Alu 20 117 0 8 866 920 282 113 7 chr1 36883120 36883420 -160312012 + Tigger7 DNA MER2_type 80 411 -2080 8 866 246 116 0 0 chr1 36883716 36883759 -160311673 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 866 393 276 49 43 chr1 36885103 36885266 -160310166 - RSINE1 SINE B4 0 165 2 8 866 186 43 0 0 chr1 36887071 36887094 -160308338 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 8 866 1424 60 27 0 chr1 36887245 36887404 -160308028 + B2_Mm1a SINE B2 2 160 -33 8 866 417 39 0 0 chr1 36887404 36887455 -160307977 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 8 866 1424 60 27 0 chr1 36887455 36887479 -160307953 + B2_Mm1a SINE B2 161 189 -4 8 866 761 91 8 24 chr1 36889057 36889181 -160306251 + B2_Mm2 SINE B2 2 123 -72 8 866 367 184 184 0 chr1 36889244 36889331 -160306101 + PB1D9 SINE Alu 2 104 -16 8 866 189 74 0 0 chr1 36890292 36890319 -160305113 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 866 1341 99 5 25 chr1 36890732 36890929 -160304503 + B2_Mm2 SINE B2 1 193 -2 8 866 1237 169 203 41 chr1 36891113 36891433 -160303999 + ORR1D1 LTR MaLR 3 374 0 8 866 237 311 40 75 chr1 36891814 36891988 -160303444 - MER104 DNA Tc2 -6 175 8 8 866 284 250 49 24 chr1 36893768 36893850 -160301582 - B3A SINE B2 -114 84 1 8 866 912 216 48 10 chr1 36894126 36894332 -160301100 - B3 SINE B2 0 216 3 8 866 30 0 0 0 chr1 36895067 36895097 -160300335 + AT_rich Low_complexity Low_complexity 1 30 0 8 866 420 219 146 0 chr1 36895144 36895267 -160300165 + B1F SINE Alu 9 149 0 8 866 259 238 15 31 chr1 36895400 36895465 -160299967 + ID SINE ID 17 80 -144 8 866 226 224 0 108 chr1 36895408 36895473 -160299959 + ID4_ SINE ID 26 83 0 8 866 393 282 98 7 chr1 36895611 36895754 -160299678 + L1MA5 LINE L1 6139 6294 -6 8 866 705 303 23 19 chr1 36896009 36896224 -160299208 - B4A SINE B4 -76 216 1 8 866 242 270 76 34 chr1 36896226 36896345 -160299087 - L1MD2 LINE L1 -421 5938 5815 8 866 211 315 0 0 chr1 36898180 36898234 -160297198 + ID4_ SINE ID 20 73 -10 8 866 333 0 0 0 chr1 36898235 36898272 -160297160 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 866 558 307 89 9 chr1 36899591 36899929 -160295503 + L1M5 LINE L1 2876 3240 -2906 8 866 2511 322 58 51 chr1 36900122 36901480 -160293952 + Lx7 LINE L1 5932 7299 -397 8 866 327 283 70 76 chr1 36902783 36902955 -160292477 - B4A SINE B4 -75 217 47 8 866 968 175 106 0 chr1 36903142 36903331 -160292101 - B3 SINE B2 -7 209 1 8 866 320 304 112 40 chr1 36904009 36904430 -160291002 + L1M2 LINE L1 2147 2620 -3959 8 866 320 278 194 22 chr1 36904642 36904830 -160290602 + L1MCa LINE L1 2310 2529 -3792 8 866 237 313 54 13 chr1 36904835 36904984 -160290448 + L1M2 LINE L1 3109 3263 -3582 8 866 875 230 35 15 chr1 36904995 36905198 -160290234 - B3 SINE B2 -6 210 4 8 866 751 120 17 8 chr1 36905250 36905368 -160290064 - PB1D9 SINE Alu -1 119 1 8 866 527 231 134 7 chr1 36905372 36905570 -160289862 + L1M2 LINE L1 3229 3453 -3129 8 866 1192 68 0 0 chr1 36905592 36905738 -160289694 + B1_Mus2 SINE Alu 2 147 0 8 866 318 258 55 82 chr1 36905777 36905887 -160289545 - RSINE1 SINE B4 0 165 59 8 866 844 295 67 70 chr1 36905923 36906184 -160289248 + L1M2 LINE L1 3500 3743 -3102 8 866 643 218 66 47 chr1 36906184 36906396 -160289036 + B3 SINE B2 1 216 0 9 866 844 295 67 70 chr1 36906396 36906846 -160288586 + L1M2 LINE L1 3744 4209 -2636 8 866 846 280 149 37 chr1 36906846 36907107 -160288325 + L1M2 LINE L1 5758 6036 -806 8 866 558 0 0 0 chr1 36907107 36907169 -160288263 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 9 866 846 279 165 41 chr1 36907169 36907653 -160287779 + L1M2 LINE L1 5995 6549 0 8 866 1680 36 0 0 chr1 36910008 36910200 -160285232 + B2_Mm1a SINE B2 2 193 0 9 866 692 154 14 14 chr1 36911274 36911412 -160284020 + B1_Mus1 SINE Alu 11 148 0 9 866 759 295 82 41 chr1 36913162 36913601 -160281831 + Lx9 LINE L1 7055 7511 -133 9 866 691 281 68 8 chr1 36914593 36914841 -160280591 - L1M4 LINE L1 -1161 4985 4723 9 866 486 302 0 0 chr1 36914849 36914975 -160280457 + RSINE1 SINE B4 10 135 -30 9 866 587 283 137 74 chr1 36915018 36915366 -160280066 - L1M4 LINE L1 -1408 4738 4383 9 866 287 204 161 0 chr1 36915366 36915459 -160279973 - PB1D10 SINE Alu -9 108 1 9 866 587 283 137 74 chr1 36915459 36915850 -160279582 - L1M4 LINE L1 -1764 4382 3953 9 866 236 294 147 0 chr1 36915927 36916063 -160279369 - L1M4 LINE L1 -2344 3796 3641 9 866 342 115 0 0 chr1 36917102 36917154 -160278278 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 866 540 273 195 0 chr1 36918196 36918350 -160277082 + B3 SINE B2 23 206 -10 9 866 655 139 113 0 chr1 36919138 36919253 -160276179 - MTC LTR MaLR 0 421 294 9 866 319 203 24 60 chr1 36919292 36919376 -160276056 + LTR52 LTR ERVL 322 402 -19 9 866 621 0 0 0 chr1 36919553 36919622 -160275810 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 866 1126 79 0 0 chr1 36919622 36919762 -160275670 - B1_Mm SINE Alu -7 140 1 9 866 520 259 160 24 chr1 36920264 36920470 -160274962 + B4A SINE B4 1 234 -58 9 866 283 196 0 19 chr1 36920477 36920529 -160274903 + RSINE1 SINE B4 74 124 -41 9 866 309 89 0 0 chr1 36920535 36920580 -160274852 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 866 575 255 98 0 chr1 36920668 36920821 -160274611 + B3A SINE B2 5 172 -26 9 866 22 0 0 0 chr1 36921045 36921067 -160274365 + AT_rich Low_complexity Low_complexity 1 22 0 9 866 294 29 0 0 chr1 36921074 36921109 -160274323 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 866 704 184 16 0 chr1 36921144 36921269 -160274163 - RSINE1 SINE B4 -37 128 2 9 866 45 19 0 0 chr1 36922433 36922485 -160272947 + AT_rich Low_complexity Low_complexity 1 52 0 9 866 304 261 11 0 chr1 36923246 36923334 -160272098 + PB1D10 SINE Alu 27 115 -2 9 866 6167 66 29 16 chr1 36923474 36924377 -160271055 - MusHAL1 LINE L1 -1789 923 9 9 866 267 195 158 0 chr1 36924702 36924784 -160270648 + MLT1E3 LTR MaLR 54 148 -476 9 866 385 240 146 0 chr1 36926752 36926848 -160268584 + B4A SINE B4 63 172 -120 9 866 504 32 0 0 chr1 36926929 36926991 -160268441 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 866 21 0 0 0 chr1 36927214 36927235 -160268197 + AT_rich Low_complexity Low_complexity 1 21 0 9 866 396 0 0 0 chr1 36927444 36927488 -160267944 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 866 677 257 41 55 chr1 36927524 36927712 -160267720 + B3 SINE B2 2 188 -28 9 866 297 0 0 0 chr1 36927712 36927745 -160267687 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 866 677 257 41 55 chr1 36927745 36927774 -160267658 + B3 SINE B2 189 216 0 9 866 186 167 0 0 chr1 36928544 36928580 -160266852 + GA-rich Low_complexity Low_complexity 4 39 0 9 866 1082 61 0 70 chr1 36929608 36929750 -160265682 + B1_Mus2 SINE Alu 1 136 -11 9 866 318 26 0 0 chr1 36929750 36929789 -160265643 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 866 1082 61 0 70 chr1 36929789 36929804 -160265628 + B1_Mus2 SINE Alu 137 147 0 9 866 513 265 17 127 chr1 36929869 36930042 -160265390 + B4 SINE B4 139 292 0 9 866 379 271 0 10 chr1 36930134 36930231 -160265201 + PB1D10 SINE Alu 22 117 0 9 866 23 0 0 0 chr1 36930266 36930289 -160265143 + AT_rich Low_complexity Low_complexity 1 23 0 9 866 468 185 401 7 chr1 36931210 36931362 -160264070 - B3 SINE B2 -3 213 2 9 866 795 228 223 4 chr1 36931818 36932091 -160263341 + ORR1E LTR MaLR 22 354 -5 9 866 984 290 17 14 chr1 36933139 36933429 -160262003 + B4 SINE B4 2 292 0 9 866 228 231 0 0 chr1 36933447 36933499 -160261933 + CT-rich Low_complexity Low_complexity 2 53 0 9 866 337 284 11 11 chr1 36933760 36933849 -160261583 - PB1D7 SINE Alu -9 111 23 9 866 216 159 0 64 chr1 36933851 36933898 -160261534 + G-rich Low_complexity Low_complexity 4 47 0 9 866 210 71 0 0 chr1 36933922 36933950 -160261482 + (A)n Simple_repeat Simple_repeat 1 28 0 9 866 315 263 104 19 chr1 36934456 36934645 -160260787 - L1MEf LINE L1 -940 5206 5006 9 866 477 303 83 54 chr1 36934896 36935288 -160260144 + Lx7 LINE L1 6975 7388 -85 9 866 226 258 92 63 chr1 36935829 36936003 -160259429 - L1MEf LINE L1 -4532 1710 1532 9 866 211 114 29 0 chr1 36936077 36936112 -160259320 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 866 213 270 16 16 chr1 36936352 36936416 -160259016 + L2a LINE L2 3363 3426 0 9 866 730 151 17 0 chr1 36937045 36937164 -160258268 - B1_Mur3 SINE Alu 0 149 29 9 866 388 160 12 62 chr1 36937268 36937348 -160258084 - B3A SINE B2 -118 80 5 9 866 815 163 56 14 chr1 36937914 36938057 -160257375 + B1_Mur2 SINE Alu 1 149 0 9 866 288 103 0 0 chr1 36938877 36938916 -160256516 + Lx6 LINE L1 6828 6866 -594 9 866 364 264 64 14 chr1 36938960 36939123 -160256309 + L1MB3 LINE L1 6004 6180 0 9 866 265 295 99 29 chr1 36939098 36939269 -160256163 + L1ME1 LINE L1 4725 4907 -1239 9 866 477 301 73 5 chr1 36939395 36939615 -160255817 + L1ME1 LINE L1 5655 5889 -290 9 866 2189 128 50 13 chr1 36939969 36940349 -160255083 + ORR1B1 LTR MaLR 1 394 0 9 866 357 246 207 19 chr1 36940901 36941060 -160254372 + B3 SINE B2 1 189 -27 9 866 623 279 114 22 chr1 36941881 36942108 -160253324 - B4A SINE B4 -44 248 1 9 866 225 346 39 0 chr1 36942493 36942571 -160252861 + ID4 SINE ID 1 81 -2 9 866 252 342 45 9 chr1 36942839 36942951 -160252481 + MER58B DNA MER1_type 225 340 -1 9 866 367 301 136 30 chr1 36943083 36943319 -160252113 - MER21B LTR ERV1 -135 728 468 9 866 1112 237 39 21 chr1 36944384 36944669 -160250763 - B4 SINE B4 0 292 3 9 866 310 297 22 11 chr1 36945359 36945444 -160249988 + PB1D10 SINE Alu 5 91 -26 9 866 411 38 0 0 chr1 36945444 36945497 -160249935 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 9 866 279 224 17 0 chr1 36946879 36946937 -160248495 + L1MC3 LINE L1 6374 6432 -1353 9 866 1059 211 34 0 chr1 36947063 36947272 -160248160 + B3 SINE B2 1 216 0 9 866 490 286 82 67 chr1 36947374 36947704 -160247728 + L1MC3 LINE L1 6688 7022 -763 9 866 371 89 36 0 chr1 36947759 36947827 -160247605 - RLTR11A LTR ERVK -382 71 1 9 866 185 0 40 0 chr1 36948902 36948927 -160246505 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 9 866 269 305 0 12 chr1 36948929 36948998 -160246434 + PB1D10 SINE Alu 36 104 -13 9 866 370 0 40 0 chr1 36948998 36949048 -160246384 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 9 866 269 305 0 12 chr1 36949048 36949061 -160246371 + PB1D10 SINE Alu 105 117 0 9 866 331 284 189 0 chr1 36949082 36949177 -160246255 + B1_Mur1 SINE Alu 2 114 -35 9 866 604 306 122 19 chr1 36949275 36949332 -160246100 - MTEa LTR MaLR -2 377 325 9 866 369 43 0 0 chr1 36949332 36949379 -160246053 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 9 866 604 306 122 19 chr1 36949379 36949591 -160245841 - MTEa LTR MaLR -55 324 80 9 866 820 113 15 8 chr1 36949672 36949806 -160245626 - B1_Mus1 SINE Alu -3 145 11 9 866 526 228 6 70 chr1 36949806 36949819 -160245613 - ID_B1 SINE B4 0 173 79 9 866 1192 49 7 0 chr1 36950803 36950947 -160244485 + B1_Mus2 SINE Alu 3 147 0 9 866 228 35 0 0 chr1 36951784 36951813 -160243619 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 866 265 262 0 56 chr1 36951862 36951951 -160243481 + RMER16-int LTR ERVK 868 951 -4455 9 866 452 198 0 42 chr1 36952046 36952141 -160243291 + RLTR19-int LTR ERVK 799 889 -5248 9 866 370 232 52 10 chr1 36952194 36952290 -160243142 + RLTR19-int LTR ERVK 1162 1261 -4261 9 866 441 153 24 0 chr1 36952315 36952400 -160243032 + RLTR19-int LTR ERVK 890 976 -5161 9 866 379 209 70 0 chr1 36952578 36952664 -160242768 + RLTR19-int LTR ERVK 987 1078 -5059 9 866 363 251 153 18 chr1 36952709 36952879 -160242553 + MTC-int LTR MaLR 910 1102 -156 9 866 1216 42 0 0 chr1 36952907 36953050 -160242382 + B1_Mus1 SINE Alu 1 143 -5 9 866 730 242 26 81 chr1 36953176 36953410 -160242022 + URR1A DNA MER1_type 6 226 0 9 866 1609 234 92 25 chr1 36953528 36954043 -160241389 + RLTR19-int LTR ERVK 1870 2718 -3419 9 866 970 169 105 18 chr1 36954027 36954319 -160241113 + RLTR19-int LTR ERVK 2880 3044 -3093 9 866 3305 185 61 48 chr1 36954528 36955369 -160240063 + RLTR19-int LTR ERVK 3529 4380 -1757 9 866 1284 110 28 0 chr1 36955542 36955724 -160239708 + B2_Mm2 SINE B2 1 187 -8 9 866 388 290 0 10 chr1 36956355 36956456 -160238976 + RSINE1 SINE B4 52 151 -14 9 866 211 278 82 89 chr1 36956357 36956503 -160238929 + B3A SINE B2 53 197 -1 9 866 491 213 146 8 chr1 36956545 36956668 -160238764 + MTC LTR MaLR 282 421 0 9 866 433 252 48 10 chr1 36956669 36956773 -160238659 - B4 SINE B4 -184 108 1 9 866 360 312 0 84 chr1 36956777 36956896 -160238536 - PB1D10 SINE Alu -8 109 1 9 866 239 304 22 0 chr1 36957214 36957306 -160238126 + PB1D10 SINE Alu 15 108 -9 9 866 449 302 100 35 chr1 36957756 36958017 -160237415 + L1MB5 LINE L1 5860 6137 -37 9 866 282 290 37 9 chr1 36958086 36958194 -160237238 + L1MC LINE L1 3737 3847 -2299 9 866 372 231 217 43 chr1 36958442 36958700 -160236732 + L1MD LINE L1 4187 4489 -1657 9 866 229 314 58 0 chr1 36958709 36958795 -160236637 + Lx8 LINE L1 7237 7327 -146 9 866 933 39 138 8 chr1 36959025 36959145 -160236287 + B1_Mus1 SINE Alu 2 139 -9 9 866 297 0 0 0 chr1 36959145 36959178 -160236254 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 866 286 359 79 26 chr1 36959445 36959674 -160235758 + L1M4 LINE L1 181 421 -6121 9 866 320 219 233 50 chr1 36960415 36960535 -160234897 + B1F2 SINE Alu 5 146 -3 9 866 330 132 0 0 chr1 36960539 36960592 -160234840 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 866 442 238 9 47 chr1 36960909 36961015 -160234417 - PB1D10 SINE Alu 0 117 16 9 866 250 297 0 0 chr1 36961066 36961140 -160234292 - ID2 SINE ID -9 74 1 9 866 985 239 43 39 chr1 36961316 36961573 -160233859 - B4 SINE B4 0 292 35 1 866 256 273 14 57 chr1 36961747 36961817 -160233615 + PB1D10 SINE Alu 3 69 -48 1 108 3466 180 48 16 chr1 36962050 36962722 -160232710 + RMER1B Other Other 370 1062 -4 1 867 1348 69 16 26 chr1 36962724 36962917 -160232515 + B2_Mm1t SINE B2 1 191 -2 1 867 566 192 17 20 chr1 36962981 36963099 -160232333 + B1F2 SINE Alu 1 109 -11 1 867 180 0 0 0 chr1 36963099 36963119 -160232313 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 867 273 256 10 146 chr1 36963689 36963881 -160231551 + L1MC LINE L1 3394 3559 -2587 1 867 687 242 108 21 chr1 36963900 36964094 -160231338 - B3 SINE B2 -5 211 1 1 867 511 266 139 63 chr1 36964452 36965206 -160230226 + L1M4 LINE L1 4598 5410 -769 1 867 274 211 117 43 chr1 36965448 36965542 -160229890 + L1M4 LINE L1 5545 5645 -549 1 867 654 242 152 0 chr1 36966311 36966489 -160228943 + B3 SINE B2 4 208 -8 1 867 223 164 31 62 chr1 36967026 36967042 -160228390 + B4 SINE B4 77 139 -153 1 867 301 82 41 0 chr1 36967042 36967091 -160228341 + B1_Mur4 SINE Alu 5 55 -95 1 867 375 235 0 0 chr1 36967093 36967178 -160228254 + (CAGG)n Simple_repeat Simple_repeat 2 86 0 1 867 497 178 9 78 chr1 36967178 36967294 -160228138 + B1_Mus2 SINE Alu 40 147 0 1 867 960 178 11 0 chr1 36967772 36967946 -160227486 - B2_Mm2 SINE B2 -18 177 2 1 867 354 245 100 36 chr1 36968504 36968614 -160226818 + PB1D10 SINE Alu 1 117 0 1 867 421 314 64 43 chr1 36968717 36969090 -160226342 + L1ME1 LINE L1 4806 5186 -960 1 867 1149 191 5 23 chr1 36969196 36969416 -160226016 - B3 SINE B2 0 216 1 1 867 314 295 189 35 chr1 36969512 36970136 -160225296 + L1ME1 LINE L1 5268 5985 -179 1 867 1110 88 14 0 chr1 36970431 36970578 -160224854 - B1_Mur4 SINE Alu 0 150 2 1 867 261 182 0 0 chr1 36970807 36970862 -160224570 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 867 360 259 0 12 chr1 36970955 36971037 -160224395 + PB1D10 SINE Alu 10 90 -27 1 867 410 157 291 18 chr1 36972589 36972699 -160222733 + B1_Mur2 SINE Alu 4 143 -6 1 867 180 0 0 0 chr1 36972711 36972731 -160222701 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 867 469 232 93 88 chr1 36973092 36973286 -160222146 + B3A SINE B2 1 195 -3 1 867 180 0 0 0 chr1 36973297 36973317 -160222115 + (A)n Simple_repeat Simple_repeat 1 20 0 1 867 736 148 253 24 chr1 36973804 36973970 -160221462 + B3 SINE B2 5 208 -8 1 867 200 256 0 0 chr1 36973970 36974013 -160221419 + (TGGG)n Simple_repeat Simple_repeat 2 44 0 1 867 191 325 39 13 chr1 36974130 36974208 -160221224 + L2b LINE L2 3296 3375 0 1 867 363 280 43 0 chr1 36974634 36974727 -160220705 + PB1D10 SINE Alu 1 97 -20 1 867 773 231 8 24 chr1 36975019 36975230 -160220202 + B3A SINE B2 10 208 -8 1 867 728 269 71 19 chr1 36976033 36976245 -160219187 + ID_B1 SINE B4 2 224 0 1 867 540 281 36 7 chr1 36976337 36976477 -160218955 + RSINE1 SINE B4 3 146 -19 1 867 740 147 7 52 chr1 36979325 36979461 -160215971 + B1_Mus2 SINE Alu 1 130 -17 1 867 725 191 30 24 chr1 36980027 36980175 -160215257 + B3 SINE B2 9 150 -66 1 867 252 0 0 0 chr1 36980175 36980203 -160215229 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 867 459 246 53 74 chr1 36980203 36980243 -160215189 + B2_Mm2 SINE B2 150 192 -3 1 867 298 338 87 61 chr1 36980267 36980497 -160214935 + L1MEc LINE L1 405 640 -5760 1 867 3928 107 87 26 chr1 36980711 36981413 -160214019 + RMER6A LTR ERVK 1 745 -11 1 867 274 248 57 8 chr1 36981668 36981790 -160213642 + BC1_Mm scRNA scRNA 1 128 -24 1 867 425 297 62 9 chr1 36982313 36982524 -160212908 + L1MEc LINE L1 3488 3709 -2610 1 867 225 0 0 0 chr1 36982559 36982584 -160212848 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 867 1136 83 0 0 chr1 36982958 36983103 -160212329 + B1_Mus1 SINE Alu 4 148 0 1 867 206 121 0 0 chr1 36983106 36983139 -160212293 + (A)n Simple_repeat Simple_repeat 1 33 0 1 867 27 29 0 0 chr1 36984371 36984405 -160211027 + AT_rich Low_complexity Low_complexity 1 34 0 1 867 570 179 270 6 chr1 36984713 36984876 -160210556 + B3 SINE B2 1 206 -10 1 867 26 50 0 0 chr1 36984990 36985030 -160210402 + AT_rich Low_complexity Low_complexity 1 40 0 1 867 200 35 35 0 chr1 36985032 36985061 -160210371 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 867 841 159 8 0 chr1 36985061 36985193 -160210239 + B1_Mus1 SINE Alu 3 135 -13 1 867 415 220 54 11 chr1 36985975 36986067 -160209365 - B1F1 SINE Alu -51 98 3 1 867 637 231 58 12 chr1 36986952 36987123 -160208309 + B3A SINE B2 2 180 -18 1 867 206 224 20 0 chr1 36987149 36987198 -160208234 + CT-rich Low_complexity Low_complexity 2 51 0 1 867 237 33 0 0 chr1 36987229 36987259 -160208173 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 867 510 193 11 0 chr1 36987267 36987355 -160208077 - B1F1 SINE Alu -13 136 48 1 867 526 292 70 1 chr1 36987378 36987669 -160207763 + L1MB2 LINE L1 5162 5474 -697 1 867 285 98 0 0 chr1 36987673 36987714 -160207718 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 1 867 469 299 70 9 chr1 36987764 36987993 -160207439 + L1MB2 LINE L1 5587 5829 -342 1 867 772 133 52 0 chr1 36988030 36988165 -160207267 + B1_Mur2 SINE Alu 7 148 -1 1 867 201 296 0 0 chr1 36988231 36988285 -160207147 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 867 1262 105 11 0 chr1 36988568 36988749 -160206683 + B2_Mm1a SINE B2 2 184 -9 1 867 444 232 35 26 chr1 36988806 36988921 -160206511 + PB1D10 SINE Alu 2 117 0 1 867 269 319 20 59 chr1 36988925 36989078 -160206354 + B1F SINE Alu 1 147 -2 1 867 677 243 125 27 chr1 36989257 36989553 -160205879 + L1MB2 LINE L1 5818 6142 -29 1 867 1095 63 7 0 chr1 36989708 36989850 -160205582 + B1_Mus2 SINE Alu 5 147 0 1 867 209 33 33 0 chr1 36989850 36989880 -160205552 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 867 1319 93 50 0 chr1 36989986 36990168 -160205264 + B2_Mm2 SINE B2 2 192 -3 1 867 548 205 0 26 chr1 36990171 36990286 -160205146 + PB1D10 SINE Alu 3 114 -3 1 867 542 211 118 15 chr1 36990634 36990769 -160204663 + B1_Mur2 SINE Alu 1 149 0 1 867 401 273 74 37 chr1 36990998 36991188 -160204244 - B3A SINE B2 -1 197 1 1 867 24 0 0 0 chr1 36991358 36991382 -160204050 + AT_rich Low_complexity Low_complexity 1 24 0 1 867 984 23 0 30 chr1 36992787 36992919 -160202513 + B1_Mus1 SINE Alu 21 148 0 1 867 631 260 36 31 chr1 36992932 36993143 -160202289 + B3 SINE B2 2 216 0 1 867 986 45 0 15 chr1 36993207 36993342 -160202090 + B1_Mm SINE Alu 15 147 0 1 867 246 0 65 43 chr1 36993927 36993973 -160201459 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 1 867 21 0 0 0 chr1 36995981 36996002 -160199430 + GC_rich Low_complexity Low_complexity 1 21 0 1 867 189 0 0 0 chr1 36996145 36996166 -160199266 + (CGG)n Simple_repeat Simple_repeat 2 22 0 1 867 446 276 41 0 chr1 36997734 36997857 -160197575 - B1F1 SINE Alu -21 128 1 1 867 277 281 59 34 chr1 36998284 36998402 -160197030 + Arthur1A DNA Tip100 1 121 -56 1 867 423 0 0 0 chr1 36999684 36999731 -160195701 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 867 570 227 23 8 chr1 36999731 36999852 -160195580 - RSINE1 SINE B4 -40 125 2 1 867 238 309 78 52 chr1 36999884 37000000 -160195432 - RSINE1 SINE B4 -19 146 28 1 867 269 250 143 25 chr1 37000659 37000778 -160194654 + L2 LINE L2 2422 2554 -865 1 867 484 270 26 17 chr1 37001959 37002076 -160193356 - PB1D7 SINE Alu -2 118 1 2 867 231 242 43 43 chr1 37002283 37002352 -160193080 + 4.5SRNA scRNA scRNA 20 88 -6 3 867 502 241 9 18 chr1 37002292 37002402 -160193030 + B1F2 SINE Alu 34 142 -7 4 867 585 246 48 39 chr1 37002544 37002751 -160192681 - L1MA8 LINE L1 -5 6286 6078 5 867 1230 54 0 0 chr1 37003415 37003562 -160191870 + B1_Mus2 SINE Alu 1 147 0 6 867 214 191 0 0 chr1 37003565 37003607 -160191825 + A-rich Low_complexity Low_complexity 1 42 0 7 867 650 231 0 0 chr1 37003626 37003756 -160191676 + B3 SINE B2 1 130 -86 8 867 1628 205 105 13 chr1 37003945 37004326 -160191106 + MTD LTR MaLR 3 418 -1 9 867 2634 63 36 13 chr1 37004695 37005083 -160190349 + MTB_Mm LTR MaLR 11 407 0 1 867 29 0 0 0 chr1 37005180 37005209 -160190223 + AT_rich Low_complexity Low_complexity 1 29 0 1 867 494 294 81 50 chr1 37005219 37005380 -160190052 - B3A SINE B2 -5 193 28 1 867 207 0 0 0 chr1 37005413 37005436 -160189996 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 1 867 1264 34 0 0 chr1 37005436 37005583 -160189849 - B1_Mm SINE Alu 0 147 1 1 867 351 272 39 123 chr1 37005733 37005888 -160189544 - B1F SINE Alu -4 145 4 1 867 427 304 44 0 chr1 37005910 37006045 -160189387 - B1F SINE Alu -1 148 8 1 867 224 304 57 14 chr1 37005994 37006064 -160189368 - B4A SINE B4 -149 143 71 1 867 355 332 72 26 chr1 37006080 37006275 -160189157 + L1MC5 LINE L1 7710 7913 -48 1 867 376 259 116 22 chr1 37007121 37007259 -160188173 - MLT1A1 LTR MaLR 0 408 258 1 867 313 257 75 19 chr1 37007286 37007393 -160188039 - MLT1A1 LTR MaLR -181 193 81 1 867 465 34 0 0 chr1 37007512 37007571 -160187861 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 867 261 279 29 0 chr1 37007571 37007639 -160187793 - B3A SINE B2 -57 159 90 2 867 490 144 9 19 chr1 37007661 37007767 -160187665 + CT-rich Low_complexity Low_complexity 3 107 0 2 867 758 169 0 98 chr1 37007767 37007931 -160187501 - B1_Mur3 SINE Alu 0 149 2 2 867 213 286 0 0 chr1 37007950 37007999 -160187433 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 867 38781 30 0 0 chr1 37008033 37014311 -160181121 - L1Md_T LINE L1 0 6585 234 2 867 746 270 51 17 chr1 37014317 37014554 -160180878 - B4A SINE B4 -46 246 2 2 867 410 293 26 0 chr1 37014572 37014688 -160180744 - L1MD2 LINE L1 -218 6141 6023 2 867 31 26 0 0 chr1 37014693 37014731 -160180701 + AT_rich Low_complexity Low_complexity 1 38 0 2 867 277 225 155 0 chr1 37015436 37015507 -160179925 + PB1D10 SINE Alu 31 112 -5 2 867 187 237 118 0 chr1 37015588 37015664 -160179768 + MIR SINE MIR 44 128 -134 3 867 522 283 220 4 chr1 37015853 37016080 -160179352 - MER2 DNA MER2_type 0 345 70 3 867 21 36 0 0 chr1 37016085 37016113 -160179319 + AT_rich Low_complexity Low_complexity 1 28 0 3 867 1247 106 37 5 chr1 37016113 37016302 -160179130 - B2_Mm2 SINE B2 0 195 1 3 867 765 279 80 36 chr1 37016532 37016807 -160178625 - B4A SINE B4 -2 290 4 3 867 642 26 0 0 chr1 37016807 37016883 -160178549 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 3 867 619 220 0 25 chr1 37018211 37018332 -160177100 + B2_Mm2 SINE B2 2 119 -76 3 867 1235 48 0 0 chr1 37018332 37018477 -160176955 + B1_Mus1 SINE Alu 2 146 -2 3 867 579 274 64 86 chr1 37018477 37018575 -160176857 + B3 SINE B2 131 215 -1 3 867 385 248 82 9 chr1 37019485 37019595 -160175837 + PB1 SINE Alu 9 126 -1 3 867 191 348 14 28 chr1 37019922 37020064 -160175368 - L2c LINE L2 -223 3164 3025 4 867 324 315 0 18 chr1 37020165 37020275 -160175157 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 4 867 180 200 0 0 chr1 37020281 37020321 -160175111 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 867 297 383 0 0 chr1 37020333 37020440 -160174992 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 867 522 348 0 0 chr1 37020913 37021271 -160174161 + CT-rich Low_complexity Low_complexity 1 358 0 4 867 381 330 21 43 chr1 37022576 37022763 -160172669 - MIR SINE MIR -70 192 10 4 867 638 236 52 104 chr1 37023231 37023539 -160171893 - B4A SINE B4 0 292 1 4 867 236 330 19 29 chr1 37023975 37024078 -160171354 - L1MEf LINE L1 -5331 869 768 4 867 857 257 96 57 chr1 37024465 37024556 -160170876 + B4A SINE B4 1 100 -192 4 867 2402 102 3 58 chr1 37024556 37024920 -160170512 - ORR1A1 LTR MaLR 0 346 3 4 867 857 257 96 57 chr1 37024920 37025041 -160170391 + B4A SINE B4 101 214 -78 4 867 198 0 0 0 chr1 37025041 37025063 -160170369 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 867 857 257 96 57 chr1 37025063 37025130 -160170302 + B4A SINE B4 215 291 -1 4 867 908 150 0 22 chr1 37025130 37025498 -160169934 + (CA)n Simple_repeat Simple_repeat 1 359 0 5 867 212 167 21 0 chr1 37026112 37026160 -160169272 + (CAT)n Simple_repeat Simple_repeat 3 51 0 5 867 264 30 0 0 chr1 37026619 37026652 -160168780 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 5 867 275 171 0 28 chr1 37026984 37027056 -160168376 + CT-rich Low_complexity Low_complexity 3 72 0 5 867 216 24 73 0 chr1 37027701 37027742 -160167690 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 867 502 189 211 8 chr1 37028104 37028237 -160167195 + L1MDb LINE L1 933 1092 -5317 5 867 234 0 0 0 chr1 37028241 37028267 -160167165 + (CAGGG)n Simple_repeat Simple_repeat 3 28 0 5 867 601 208 25 123 chr1 37028271 37028474 -160166958 + B3A SINE B2 14 196 -2 5 867 580 272 0 7 chr1 37028484 37028632 -160166800 + B1_Mur1 SINE Alu 2 148 -1 5 867 653 251 102 6 chr1 37028650 37028826 -160166606 + B3A SINE B2 1 193 -5 5 867 1193 61 0 0 chr1 37029109 37029256 -160166176 + B1_Mm SINE Alu 1 147 0 6 867 360 125 0 0 chr1 37029257 37029321 -160166111 + (A)n Simple_repeat Simple_repeat 1 64 0 6 867 1942 152 67 9 chr1 37029433 37029798 -160165634 - ORR1C1 LTR MaLR 0 379 1 6 867 827 80 56 42 chr1 37030054 37030197 -160165235 + B2_Mm2 SINE B2 1 145 -50 6 867 393 22 0 0 chr1 37030197 37030243 -160165189 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 867 1263 257 23 20 chr1 37030308 37030705 -160164727 - Lx9 LINE L1 -21 7623 7226 6 867 554 132 37 9 chr1 37031239 37031346 -160164086 - RMER12 LTR ERVK -28 1294 1185 6 867 369 109 0 0 chr1 37031357 37031412 -160164020 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 6 867 234 0 0 0 chr1 37031416 37031442 -160163990 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 6 867 3675 97 59 3 chr1 37031442 37032031 -160163401 - RMER12 LTR ERVK -421 901 280 6 867 1549 162 19 13 chr1 37032046 37032358 -160163074 + ORR1D1 LTR MaLR 59 372 -2 6 867 565 289 61 52 chr1 37032535 37032765 -160162667 - B4A SINE B4 -59 233 2 7 867 232 239 0 0 chr1 37032844 37032890 -160162542 + CT-rich Low_complexity Low_complexity 3 48 0 7 867 441 220 76 48 chr1 37032895 37033000 -160162432 - PB1D10 SINE Alu -9 108 1 7 867 3195 53 8 2 chr1 37033045 37033439 -160161993 - MTA_Mm LTR MaLR 0 396 1 7 867 354 23 0 0 chr1 37033505 37033548 -160161884 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 867 275 305 65 65 chr1 37033776 37033990 -160161442 + L1MD2 LINE L1 5 218 -6324 7 867 619 127 17 0 chr1 37034187 37034305 -160161127 + (GA)n Simple_repeat Simple_repeat 1 120 0 7 867 401 256 0 0 chr1 37034457 37034539 -160160893 + ID2 SINE ID 1 82 -1 7 867 512 251 119 50 chr1 37034654 37034872 -160160560 + RMER5 LTR ERV1 302 534 0 7 867 236 254 60 0 chr1 37034989 37035056 -160160376 - B1F SINE Alu -60 89 19 7 867 275 206 40 27 chr1 37035306 37035381 -160160051 + L1MD2 LINE L1 3678 3753 -2891 7 867 2502 95 3 0 chr1 37035914 37036240 -160159192 - ORR1A2 LTR MaLR 0 327 1 8 867 1180 63 0 0 chr1 37036316 37036459 -160158973 + B1_Mus1 SINE Alu 1 143 -5 8 867 332 22 0 22 chr1 37036463 37036509 -160158923 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 8 867 751 251 140 72 chr1 37037619 37037740 -160157692 + L1MD2 LINE L1 5871 5986 -754 7 867 1051 101 0 0 chr1 37037740 37037878 -160157554 + B1_Mus1 SINE Alu 2 139 -9 8 867 461 16 33 0 chr1 37037878 37037939 -160157493 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 8 867 751 251 140 72 chr1 37037939 37038136 -160157296 + L1MD2 LINE L1 5987 6211 -529 7 867 270 0 0 0 chr1 37038136 37038166 -160157266 + (TTA)n Simple_repeat Simple_repeat 1 30 0 8 867 751 251 140 72 chr1 37038166 37038231 -160157201 + L1MD2 LINE L1 6212 6280 -460 7 867 312 212 0 70 chr1 37038248 37038319 -160157113 - Tigger7 DNA MER2_type -20 2471 2406 8 867 544 311 38 71 chr1 37038317 37038556 -160156876 - Tigger7 DNA MER2_type -2227 264 34 8 867 538 269 114 32 chr1 37038574 37038864 -160156568 + L1MD2 LINE L1 6280 6598 -79 7 867 531 0 0 0 chr1 37038931 37038990 -160156442 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 867 480 35 0 0 chr1 37039408 37039466 -160155966 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 8 867 336 158 57 68 chr1 37039476 37039564 -160155868 + RMER10A LTR ERVL 10 96 -346 8 867 232 197 0 43 chr1 37039983 37040035 -160155397 + T-rich Low_complexity Low_complexity 15 66 0 9 867 1200 55 0 0 chr1 37040035 37040181 -160155251 - B1_Mm SINE Alu 0 147 2 9 867 232 197 0 43 chr1 37040181 37040197 -160155235 + T-rich Low_complexity Low_complexity 1 14 0 9 867 308 24 24 0 chr1 37040222 37040263 -160155169 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 9 867 908 62 0 15 chr1 37040263 37040395 -160155037 - B1_Mus1 SINE Alu -9 139 10 9 867 411 274 8 8 chr1 37040466 37040584 -160154848 - MLT1C LTR MaLR -1 466 349 9 867 1658 142 126 17 chr1 37040649 37041007 -160154425 + RMER10B LTR ERVL 2 398 0 9 867 1291 206 79 24 chr1 37041370 37041739 -160153693 + RMER10A LTR ERVL 2 390 -52 9 867 367 110 55 0 chr1 37041739 37041812 -160153620 + CT-rich Low_complexity Low_complexity 3 79 0 9 867 364 252 20 29 chr1 37041840 37041942 -160153490 + PB1D10 SINE Alu 3 103 -14 9 867 1942 104 147 23 chr1 37042966 37043320 -160152112 + RMER10B LTR ERVL 1 398 0 1 867 620 235 45 13 chr1 37043552 37043707 -160151725 - B3 SINE B2 -1 215 56 1 867 360 331 91 25 chr1 37043779 37044176 -160151256 - L1M7 LINE L1 -5793 425 3 1 867 398 279 46 15 chr1 37044272 37044403 -160151029 - Kanga11a DNA Tc2 -745 225 91 1 867 748 270 117 30 chr1 37044517 37044883 -160150549 + MTE2a LTR MaLR 10 377 -2 1 867 1982 158 56 65 chr1 37045383 37045829 -160149603 - RMER10A LTR ERVL 0 442 1 1 867 25 0 0 0 chr1 37045883 37045908 -160149524 + AT_rich Low_complexity Low_complexity 1 25 0 1 867 347 263 61 33 chr1 37045911 37046026 -160149406 + Lx7 LINE L1 7514 7575 -121 1 867 225 0 0 0 chr1 37046026 37046051 -160149381 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 867 279 0 0 0 chr1 37046051 37046081 -160149351 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 867 347 260 55 50 chr1 37046081 37046193 -160149239 + Lx7 LINE L1 7576 7695 -1 1 867 1300 202 155 26 chr1 37046214 37046595 -160148837 - RMER10A LTR ERVL -12 430 1 1 867 182 37 37 0 chr1 37046600 37046627 -160148805 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 867 673 132 57 0 chr1 37046628 37046734 -160148698 - PB1D9 SINE Alu -7 113 2 1 867 319 374 27 6 chr1 37046841 37047024 -160148408 - MLT1C LTR MaLR -272 195 9 1 867 251 195 75 65 chr1 37047444 37047537 -160147895 + MLT1A1 LTR MaLR 315 408 0 1 867 22 56 0 0 chr1 37048339 37048375 -160147057 + AT_rich Low_complexity Low_complexity 1 36 0 1 867 1189 36 0 0 chr1 37048516 37048654 -160146778 + B1_Mus1 SINE Alu 2 139 -9 1 867 198 0 0 0 chr1 37048654 37048676 -160146756 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 867 327 250 11 0 chr1 37049459 37049547 -160145885 + PB1D10 SINE Alu 27 115 -2 1 867 5988 72 30 24 chr1 37049690 37050878 -160144554 - L1VL2 LINE L1 -1789 1826 658 1 867 1125 76 21 0 chr1 37050878 37051022 -160144410 - B1_Mus2 SINE Alu 0 147 1 1 867 5827 84 24 54 chr1 37051022 37051496 -160143936 - L1VL2 LINE L1 -5678 657 179 1 867 270 0 0 0 chr1 37051737 37051767 -160143665 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1 867 539 284 136 17 chr1 37051767 37052003 -160143429 - B4A SINE B4 -4 288 25 1 867 258 220 0 0 chr1 37052008 37052058 -160143374 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 1 867 730 203 0 17 chr1 37052059 37052239 -160143193 + (CATA)n Simple_repeat Simple_repeat 3 179 0 1 867 223 147 0 0 chr1 37052241 37052275 -160143157 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 867 727 254 141 28 chr1 37052666 37052957 -160142475 + L1ME1 LINE L1 5849 6172 -7 1 867 225 247 44 22 chr1 37053805 37053896 -160141536 - PB1D10 SINE Alu 0 117 25 1 867 1164 81 0 0 chr1 37054205 37054353 -160141079 - B1_Mus1 SINE Alu 0 148 1 1 867 1234 123 16 0 chr1 37054678 37054865 -160140567 - B2_Mm2 SINE B2 -1 194 5 1 867 362 172 40 58 chr1 37054914 37055087 -160140345 + (TTATA)n Simple_repeat Simple_repeat 4 173 0 1 867 408 243 45 9 chr1 37055646 37055758 -160139674 + L1MDa LINE L1 81 196 -6437 1 867 217 203 28 42 chr1 37055758 37055830 -160139602 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 1 867 487 216 12 18 chr1 37055830 37056000 -160139432 + (CATA)n Simple_repeat Simple_repeat 2 170 0 1 867 324 239 24 18 chr1 37056010 37056180 -160139252 + (CATATA)n Simple_repeat Simple_repeat 1 171 0 1 867 425 246 6 22 chr1 37056214 37056393 -160139039 + (CATA)n Simple_repeat Simple_repeat 3 178 0 1 867 306 236 31 19 chr1 37056369 37056529 -160138903 + (CATATA)n Simple_repeat Simple_repeat 1 162 0 1 867 211 266 94 0 chr1 37056644 37056708 -160138724 + ID SINE ID 15 84 -140 1 867 684 336 50 36 chr1 37056965 37057406 -160138026 + L1MDa LINE L1 848 1294 -5339 1 867 454 204 234 0 chr1 37057412 37057549 -160137883 + B3A SINE B2 1 169 -29 1 867 253 285 96 14 chr1 37057586 37057732 -160137700 + L1MDa LINE L1 1296 1453 -5180 1 867 225 0 0 0 chr1 37057772 37057797 -160137635 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 867 298 208 135 0 chr1 37057798 37057894 -160137538 + Lx9 LINE L1 7536 7644 0 1 867 22 0 0 0 chr1 37057979 37058001 -160137431 + AT_rich Low_complexity Low_complexity 1 22 0 1 867 508 174 0 40 chr1 37058167 37058317 -160137115 + GA-rich Low_complexity Low_complexity 3 146 0 1 867 1798 147 19 93 chr1 37058363 37058784 -160136648 - RMER10B LTR ERVL 0 398 9 1 867 784 276 114 33 chr1 37058791 37059119 -160136313 + L1MDa LINE L1 1726 2083 -4550 1 867 1003 124 0 7 chr1 37059119 37059265 -160136167 + B1_Mus1 SINE Alu 3 147 -1 1 867 784 276 114 33 chr1 37059265 37059390 -160136042 + L1MDa LINE L1 2084 2216 -4417 1 867 347 258 21 21 chr1 37059671 37059766 -160135666 - PB1D10 SINE Alu -18 99 5 1 867 887 179 6 0 chr1 37059777 37059956 -160135476 + CT-rich Low_complexity Low_complexity 1 180 0 1 867 1471 64 16 0 chr1 37059979 37060166 -160135266 - B2_Mm2 SINE B2 -4 191 2 1 867 419 218 35 0 chr1 37060170 37060257 -160135175 - BGLII_B LTR ERVK -10 431 342 1 867 552 154 22 0 chr1 37060288 37060379 -160135053 - B1_Mus1 SINE Alu -54 94 2 1 867 601 62 0 0 chr1 37060628 37060708 -160134724 + B2_Mm2 SINE B2 3 82 -113 1 867 270 348 0 0 chr1 37060708 37060720 -160134712 + RSINE1 SINE B4 4 95 -70 1 867 308 294 178 15 chr1 37060920 37061117 -160134315 + B4A SINE B4 1 229 -63 1 867 223 244 32 95 chr1 37062125 37062220 -160133212 + RSINE1 SINE B4 77 165 0 1 867 25 83 0 0 chr1 37062220 37062280 -160133152 + AT_rich Low_complexity Low_complexity 1 60 0 1 867 974 83 0 0 chr1 37062283 37062404 -160133028 + 5S rRNA rRNA 1 121 0 1 867 278 0 54 0 chr1 37062408 37062445 -160132987 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 867 21 36 0 0 chr1 37062531 37062559 -160132873 + AT_rich Low_complexity Low_complexity 1 28 0 1 867 678 258 22 38 chr1 37062811 37062996 -160132436 + B3A SINE B2 1 182 -16 1 867 283 128 21 75 chr1 37062996 37063089 -160132343 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 867 342 107 62 56 chr1 37063098 37063277 -160132155 + (CACAT)n Simple_repeat Simple_repeat 1 180 0 1 867 28 29 0 0 chr1 37063294 37063329 -160132103 + AT_rich Low_complexity Low_complexity 1 35 0 1 867 642 221 54 27 chr1 37063409 37063595 -160131837 - RMER5 LTR ERV1 0 534 344 1 867 1263 28 0 0 chr1 37063597 37063742 -160131690 + B1_Mus2 SINE Alu 1 145 -2 1 867 207 0 0 0 chr1 37063761 37063784 -160131648 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 867 1103 260 11 71 chr1 37063785 37064149 -160131283 - RMER5 LTR ERV1 -180 354 13 1 867 1996 204 36 42 chr1 37064321 37064818 -160130614 + Lx7 LINE L1 6919 7412 -284 1 867 2688 132 33 17 chr1 37064901 37065380 -160130052 - RLTR19 LTR ERVK 0 499 13 1 867 351 155 75 33 chr1 37065483 37065603 -160129829 + Lx9 LINE L1 7520 7644 0 1 867 280 299 51 8 chr1 37065688 37065806 -160129626 + MLT1B LTR MaLR 12 134 -333 1 867 287 290 59 53 chr1 37065848 37066137 -160129295 + MLT1B LTR MaLR 147 436 -31 1 867 1191 89 10 45 chr1 37066238 37066438 -160128994 + B2_Mm2 SINE B2 2 194 -1 1 867 586 167 230 50 chr1 37066442 37066581 -160128851 + RSINE1 SINE B4 1 164 -1 1 867 348 321 87 18 chr1 37066715 37066934 -160128498 + LTR82B Low_complexity ERVL 591 824 -6 1 867 614 161 82 30 chr1 37067399 37067533 -160127899 - B1_Mur2 SINE Alu 0 149 9 1 867 298 267 45 101 chr1 37067533 37067578 -160127854 - ID_B1 SINE B4 0 224 56 1 867 243 238 0 0 chr1 37067898 37067961 -160127471 + B4A SINE B4 5 67 -225 1 867 588 281 96 15 chr1 37068003 37068202 -160127230 + B4A SINE B4 63 277 -15 1 867 219 139 0 0 chr1 37068239 37068275 -160127157 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 867 242 29 29 0 chr1 37068528 37068563 -160126869 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 867 874 202 83 0 chr1 37068590 37068783 -160126649 + B3 SINE B2 1 209 -7 1 867 355 250 0 71 chr1 37068848 37068960 -160126472 - L1M4b LINE L1 -2321 4685 4582 1 867 407 172 4 37 chr1 37068985 37069266 -160126166 + (TG)n Simple_repeat Simple_repeat 1 271 0 1 867 502 257 106 19 chr1 37069576 37069816 -160125616 - L1M4b LINE L1 -4743 2265 2019 1 867 206 62 31 0 chr1 37070529 37070561 -160124871 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 1 867 1850 281 111 9 chr1 37071085 37071750 -160123682 - Lx8 LINE L1 -1 7472 6740 1 867 1393 236 93 21 chr1 37071764 37072149 -160123283 + MTC LTR MaLR 1 413 -8 1 867 408 317 8 0 chr1 37072154 37072277 -160123155 - Lx8 LINE L1 -755 6718 6595 1 867 180 0 0 0 chr1 37072540 37072560 -160122872 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 867 1131 82 0 0 chr1 37072743 37072890 -160122542 + B1_Mus2 SINE Alu 1 147 0 1 867 411 268 58 0 chr1 37073606 37073744 -160121688 - L1MD2 LINE L1 -14 6345 6200 1 867 300 224 15 15 chr1 37074036 37074104 -160121328 + Lx8 LINE L1 7021 7088 -385 1 867 242 278 56 0 chr1 37074159 37074249 -160121183 - L1MD3 LINE L1 -16 7979 7885 1 867 2196 126 0 18 chr1 37074296 37074628 -160120804 + ORR1A3 LTR MaLR 1 326 0 1 867 934 233 24 0 chr1 37074663 37074873 -160120559 + B4A SINE B4 2 216 -76 1 867 687 283 103 48 chr1 37075010 37075300 -160120132 - Lx8 LINE L1 0 7473 7168 1 867 625 234 87 12 chr1 37075310 37075483 -160119949 + Lx8 LINE L1 6939 7124 -349 1 867 1294 287 133 34 chr1 37075875 37076514 -160118918 + RCHARR1 DNA MER1_type 1 702 -272 1 867 350 271 135 32 chr1 37076514 37076640 -160118792 + ID_B1 SINE B4 82 220 -4 1 867 750 251 60 30 chr1 37076682 37076949 -160118483 + RCHARR1 DNA MER1_type 700 974 0 1 867 1227 55 0 0 chr1 37077149 37077295 -160118137 - B1_Mus2 SINE Alu 0 147 2 1 867 296 308 19 37 chr1 37077662 37077824 -160117608 + LTR37A LTR ERV1 264 422 -4 1 867 241 275 124 83 chr1 37077871 37078137 -160117295 + B4 SINE B4 2 278 -14 1 867 305 219 0 27 chr1 37078682 37078757 -160116675 + MLT1A1 LTR MaLR 316 388 -20 1 867 2433 165 38 26 chr1 37078833 37079338 -160116094 + RLTR11A2 LTR ERVK 17 527 0 1 867 378 305 66 7 chr1 37079553 37079705 -160115727 + MLT1J2 LTR MaLR 1 161 -287 1 867 292 261 68 34 chr1 37079879 37080026 -160115406 + CYRA11_Mm Unknown Y-chromosome 153 304 -313 1 867 790 133 8 0 chr1 37079901 37080029 -160115403 - URR1B DNA MER1_type -7 218 90 2 867 903 237 12 154 chr1 37080309 37080361 -160115071 + B4A SINE B4 1 52 -240 2 867 1120 95 0 0 chr1 37080361 37080509 -160114923 + B1_Mus1 SINE Alu 1 148 0 2 867 903 237 12 154 chr1 37080509 37080720 -160114712 + B4A SINE B4 53 231 -61 2 867 2083 174 103 0 chr1 37080720 37081100 -160114332 + MTC LTR MaLR 3 421 0 2 867 903 237 12 154 chr1 37081100 37081154 -160114278 + B4A SINE B4 232 274 -18 2 867 398 193 0 13 chr1 37081189 37081341 -160114091 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 2 867 606 175 0 0 chr1 37081359 37081536 -160113896 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 2 867 202 281 66 22 chr1 37081562 37081653 -160113779 - L2a LINE L2 -53 3373 3279 2 867 306 304 58 42 chr1 37082284 37082404 -160113028 + Tigger5 DNA MER2_type 1 122 -2284 2 867 276 275 53 44 chr1 37082490 37082604 -160112828 + Tigger5 DNA MER2_type 2288 2402 -4 2 867 1433 75 21 5 chr1 37083560 37083748 -160111684 - B2_Mm2 SINE B2 -3 192 2 2 867 491 289 28 102 chr1 37084286 37084463 -160110969 + RSINE1 SINE B4 2 165 0 2 867 827 155 5 102 chr1 37084578 37084765 -160110667 - MTC LTR MaLR -54 367 199 2 867 243 0 0 0 chr1 37084774 37084801 -160110631 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 867 769 137 32 0 chr1 37084822 37084946 -160110486 - B2_Mm2 SINE B2 -66 129 2 2 867 2297 156 94 38 chr1 37085118 37085617 -160109815 - RMER5 LTR ERV1 -7 527 1 2 867 279 0 0 0 chr1 37085620 37085651 -160109781 + (T)n Simple_repeat Simple_repeat 1 31 0 2 867 239 250 0 0 chr1 37087368 37087420 -160108012 - B1F SINE Alu -87 62 11 2 867 462 254 17 17 chr1 37087506 37087626 -160107806 + PB1D7 SINE Alu 1 120 0 2 867 238 300 336 0 chr1 37088046 37088186 -160107246 + B3 SINE B2 3 189 -27 2 867 933 285 22 0 chr1 37088964 37089231 -160106201 + B4A SINE B4 2 274 -18 2 867 447 112 0 0 chr1 37089233 37089313 -160106119 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 867 465 282 0 0 chr1 37089503 37089620 -160105812 - PB1D10 SINE Alu 0 117 1 2 867 272 318 49 31 chr1 37090077 37090239 -160105193 + MIRb SINE MIR 27 191 -77 2 867 29 0 0 0 chr1 37090239 37090268 -160105164 + AT_rich Low_complexity Low_complexity 1 29 0 2 867 2966 34 6 0 chr1 37090271 37090625 -160104807 + L1Md_F2 LINE L1 6223 6578 -4 2 867 714 226 13 6 chr1 37090670 37090826 -160104606 - B3A SINE B2 -36 162 6 2 867 1041 99 108 28 chr1 37091010 37091186 -160104246 - B2_Mm1t SINE B2 -2 191 2 2 867 1611 36 10 5 chr1 37091444 37091638 -160103794 - B2_Mm2 SINE B2 0 195 1 2 867 679 210 6 6 chr1 37092894 37093071 -160102361 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 867 300 228 9 82 chr1 37093231 37093341 -160102091 + MYSERV-int LTR ERVK 6439 6540 -10 2 868 570 29 0 0 chr1 37093417 37093485 -160101947 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 2 868 727 146 80 7 chr1 37093488 37093626 -160101806 + B1_Mur2 SINE Alu 2 149 0 2 868 437 318 32 0 chr1 37093700 37093826 -160101606 - RSINE1 SINE B4 -33 132 3 2 868 243 88 0 0 chr1 37093828 37093862 -160101570 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 868 1102 160 75 0 chr1 37093865 37094078 -160101354 + MYSERV16_I-int LTR ERVK 1866 2094 -232 2 868 4211 152 30 19 chr1 37094076 37094853 -160100579 - MYSERV16_I-int LTR ERVK -80 2246 1462 2 868 1723 63 0 56 chr1 37094854 37095022 -160100410 - MusHAL1 LINE L1 0 2712 2557 2 868 1080 82 0 0 chr1 37095022 37095157 -160100275 + B1_Mus1 SINE Alu 1 135 -13 2 868 219 36 0 0 chr1 37095157 37095185 -160100247 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 868 1723 63 0 56 chr1 37095185 37095283 -160100149 - MusHAL1 LINE L1 -156 2556 2461 2 868 2215 83 31 43 chr1 37095283 37095635 -160099797 - RLTR10D LTR ERVK 0 359 12 2 868 8524 52 18 43 chr1 37095635 37096288 -160099144 - MusHAL1 LINE L1 -265 2447 1809 2 868 1542 47 16 0 chr1 37096288 37096479 -160098953 - B2_Mm2 SINE B2 0 195 2 2 868 8524 52 18 43 chr1 37096479 37096507 -160098925 - MusHAL1 LINE L1 -904 1808 1808 2 868 1082 83 7 0 chr1 37096507 37096652 -160098780 - B1_Mm SINE Alu -1 146 1 2 868 8524 52 18 43 chr1 37096652 37097165 -160098267 - MusHAL1 LINE L1 -904 1808 1282 2 868 3189 147 40 12 chr1 37097166 37097563 -160097869 - MYSERV16_I-int LTR ERVK -852 1474 1060 2 868 1300 98 32 5 chr1 37097563 37097748 -160097684 - B2_Mm2 SINE B2 -5 190 1 2 868 3189 147 40 12 chr1 37097748 37097920 -160097512 - MYSERV16_I-int LTR ERVK -1267 1059 889 2 868 350 221 37 42 chr1 37098498 37098609 -160096823 - PB1D10 SINE Alu 0 120 7 2 868 374 69 17 0 chr1 37098684 37098742 -160096690 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 868 1089 91 7 0 chr1 37098742 37098885 -160096547 - B1_Mus1 SINE Alu -3 145 2 2 868 886 137 0 0 chr1 37099302 37099441 -160095991 + B1_Mus2 SINE Alu 9 147 0 2 868 2708 165 57 2 chr1 37099883 37100388 -160095044 - MT2A LTR ERVL 0 533 1 2 868 664 272 94 4 chr1 37100412 37100645 -160094787 - MER2 DNA MER2_type -91 254 1 2 868 306 237 26 13 chr1 37100998 37101075 -160094357 + ID4 SINE ID 1 78 -5 2 868 324 0 0 0 chr1 37101569 37101605 -160093827 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2 868 2382 148 83 101 chr1 37103158 37103701 -160091731 - RMER16 LTR ERVK 0 533 1 2 868 1188 42 0 0 chr1 37103736 37103880 -160091552 + B1_Mm SINE Alu 1 144 -3 2 868 459 0 0 0 chr1 37103880 37103931 -160091501 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2 868 946 246 64 35 chr1 37103994 37104276 -160091156 - B4A SINE B4 -2 290 1 2 868 821 111 22 7 chr1 37104290 37104426 -160091006 - RLTR17 LTR ERVK -553 139 2 2 868 3898 209 55 53 chr1 37104427 37105231 -160090201 - RMER3D-int LTR ERVK 0 2842 2055 2 868 1496 78 16 0 chr1 37105231 37105423 -160090009 - B2_Mm2 SINE B2 0 195 1 2 868 3898 209 55 53 chr1 37105423 37105702 -160089730 - RMER3D-int LTR ERVK -788 2054 1757 2 868 213 65 0 0 chr1 37106126 37106157 -160089275 + (T)n Simple_repeat Simple_repeat 1 31 0 2 868 2932 185 49 96 chr1 37106390 37107495 -160087937 - RMER3D-int LTR ERVK -1082 1760 188 2 868 210 24 22 67 chr1 37107567 37107612 -160087820 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 868 436 149 0 39 chr1 37107615 37107692 -160087740 - RMER3D-int LTR ERVK -2768 74 1 2 868 3270 135 7 33 chr1 37107692 37108267 -160087165 - RLTR17 LTR ERVK 0 692 133 2 868 703 207 27 60 chr1 37108865 37109050 -160086382 - MTE2a LTR MaLR 0 379 201 2 868 356 179 13 0 chr1 37109050 37109128 -160086304 + GA-rich Low_complexity Low_complexity 1 79 0 2 868 386 293 26 57 chr1 37109128 37109320 -160086112 - MTE2a LTR MaLR -233 186 1 2 868 1028 228 42 117 chr1 37109747 37110149 -160085283 + MTE2a LTR MaLR 1 372 -7 2 868 180 152 0 0 chr1 37110394 37110427 -160085005 + G-rich Low_complexity Low_complexity 3 35 0 2 868 197 108 27 0 chr1 37110521 37110558 -160084874 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 868 223 174 0 0 chr1 37111163 37111209 -160084223 + T-rich Low_complexity Low_complexity 1 46 0 2 868 216 0 0 0 chr1 37112142 37112166 -160083266 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 868 727 283 37 0 chr1 37112166 37112353 -160083079 - B4A SINE B4 -97 195 2 2 868 1317 92 43 0 chr1 37112359 37112544 -160082888 - B2_Mm2 SINE B2 -2 193 1 2 868 1226 49 0 0 chr1 37112987 37113130 -160082302 - B1_Mm SINE Alu 0 147 5 2 868 1374 200 22 28 chr1 37113328 37113642 -160081790 - ORR1B2 LTR MaLR -5 362 1 2 868 307 123 0 77 chr1 37113822 37113885 -160081547 - MTD LTR MaLR -5 414 292 2 868 2320 133 64 111 chr1 37114390 37114588 -160080844 + MTC LTR MaLR 3 209 -212 2 868 1136 61 0 57 chr1 37114588 37114745 -160080687 + B1_Mus1 SINE Alu 1 148 0 2 868 2320 133 64 111 chr1 37114745 37114986 -160080446 + MTC LTR MaLR 210 421 0 2 868 914 269 120 15 chr1 37115530 37115855 -160079577 - ORR1E LTR MaLR 0 359 1 2 868 323 166 43 43 chr1 37116001 37116310 -160079122 + (TG)n Simple_repeat Simple_repeat 1 309 0 2 868 302 170 21 21 chr1 37116508 37116604 -160078828 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 868 280 275 225 5 chr1 37117485 37117656 -160077776 + MER74B LTR ERVL 96 305 -253 2 868 303 93 0 0 chr1 37118656 37118699 -160076733 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 868 229 286 86 0 chr1 37119092 37119162 -160076270 + ID4_ SINE ID 1 76 -7 2 868 529 240 58 52 chr1 37119233 37119387 -160076045 - MER5A1 DNA MER1_type -10 156 2 2 868 1057 267 46 28 chr1 37119701 37119986 -160075446 - B4A SINE B4 0 292 3 2 868 275 278 43 106 chr1 37120049 37120077 -160075355 + B4A SINE B4 81 164 -128 2 868 471 273 9 26 chr1 37120077 37120190 -160075242 + PB1 SINE Alu 17 127 0 2 868 275 278 43 106 chr1 37120190 37120210 -160075222 + B4A SINE B4 165 231 -61 2 868 1370 197 117 20 chr1 37121095 37121436 -160073996 + ORR1D2 LTR MaLR 3 419 -2 2 868 2029 191 58 5 chr1 37121829 37122209 -160073223 + MTD LTR MaLR 6 405 -14 2 868 305 308 37 46 chr1 37122319 37122428 -160073004 - MLT1A1 LTR MaLR -1 407 300 2 868 195 42 0 0 chr1 37123272 37123296 -160072136 + (A)n Simple_repeat Simple_repeat 1 24 0 2 868 535 218 7 7 chr1 37123312 37123460 -160071972 + (TA)n Simple_repeat Simple_repeat 2 149 0 2 868 299 296 7 0 chr1 37123428 37123563 -160071869 + (CA)n Simple_repeat Simple_repeat 2 137 0 2 868 1119 234 27 12 chr1 37123690 37123949 -160071483 - MLT1A1 LTR MaLR 0 408 146 2 868 528 336 8 0 chr1 37123993 37124124 -160071308 - RSINE1 SINE B4 -6 159 28 2 868 291 371 7 70 chr1 37124111 37124253 -160071179 - MLT1A1 LTR MaLR -235 173 41 2 868 261 0 0 0 chr1 37124757 37124786 -160070646 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 868 225 312 95 88 chr1 37124840 37124977 -160070455 - B4A SINE B4 -51 241 104 2 868 945 296 50 45 chr1 37125223 37125654 -160069778 - L1MA5 LINE L1 -406 5894 5460 2 868 2225 162 47 5 chr1 37125654 37126056 -160069376 - MTC LTR MaLR 0 421 3 2 868 945 296 50 45 chr1 37126056 37126088 -160069344 - L1MA5 LINE L1 -841 5459 5429 2 868 23 0 0 0 chr1 37126091 37126114 -160069318 + AT_rich Low_complexity Low_complexity 1 23 0 2 868 1038 92 21 0 chr1 37126117 37126259 -160069173 - B1_Mus1 SINE Alu 0 148 4 2 868 774 290 36 16 chr1 37126295 37126622 -160068810 - L1M3 LINE L1 -382 5792 5463 2 868 419 157 22 44 chr1 37126874 37127054 -160068378 + (CACCC)n Simple_repeat Simple_repeat 5 180 0 2 868 210 302 0 0 chr1 37127180 37127243 -160068189 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 868 750 294 137 29 chr1 37127468 37127958 -160067474 - L1_Rod LINE L1 -500 5791 5181 2 868 451 240 10 0 chr1 37127965 37128065 -160067367 - L1_Mm LINE L1 -1313 4570 4470 3 868 1907 149 159 3 chr1 37128094 37128458 -160066974 + MTC LTR MaLR 1 421 0 3 868 319 219 128 12 chr1 37128490 37128596 -160066836 - ORR1B1 LTR MaLR -263 115 2 3 868 376 279 3 34 chr1 37128606 37128816 -160066616 + L1M3 LINE L1 4568 4776 -1367 3 868 261 376 97 13 chr1 37129245 37129638 -160065794 + L1M3 LINE L1 4786 5211 -932 3 868 241 250 15 15 chr1 37129734 37129799 -160065633 + CT-rich Low_complexity Low_complexity 3 67 0 3 868 1235 54 0 0 chr1 37130392 37130539 -160064893 - B1_Mm SINE Alu 0 147 1 3 868 442 300 68 79 chr1 37131180 37131459 -160063973 + ORR1E LTR MaLR 84 359 0 3 868 1952 73 11 4 chr1 37131487 37131749 -160063683 - L1_Mus4 LINE L1 -6 6630 6367 3 868 276 303 0 0 chr1 37132383 37132459 -160062973 - ID4_ SINE ID -6 77 2 3 868 305 215 148 8 chr1 37132485 37132607 -160062825 - B1F1 SINE Alu -10 139 1 3 868 323 331 23 23 chr1 37132737 37132867 -160062565 - MLT1H2 LTR MaLR -294 195 66 3 868 239 317 163 14 chr1 37132971 37133114 -160062318 + MIRb SINE MIR 2 168 -100 3 868 442 304 185 0 chr1 37134578 37134713 -160060719 + RSINE1 SINE B4 2 161 -4 3 868 267 242 16 16 chr1 37136072 37136135 -160059297 - MLT1A1 LTR MaLR 0 408 346 3 868 1944 96 85 0 chr1 37136405 37136687 -160058745 - ORR1A3 LTR MaLR 0 326 21 3 868 249 108 0 0 chr1 37137169 37137206 -160058226 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 868 348 274 122 80 chr1 37137216 37137454 -160057978 - RMER1C Other Other -19 1323 1076 3 868 585 266 73 37 chr1 37137341 37137532 -160057900 - Lx8 LINE L1 -153 7320 7123 3 868 1021 270 66 24 chr1 37137524 37137858 -160057574 - Lx8 LINE L1 -1031 6442 6095 3 868 1543 245 30 16 chr1 37139336 37139701 -160055731 - MTEa LTR MaLR 0 379 10 3 868 3402 33 5 5 chr1 37139719 37140115 -160055317 - MTA_Mm LTR MaLR 0 396 1 3 868 524 170 9 0 chr1 37140426 37140532 -160054900 + CT-rich Low_complexity Low_complexity 2 108 0 3 868 207 0 0 0 chr1 37140532 37140555 -160054877 + (T)n Simple_repeat Simple_repeat 1 23 0 3 868 1059 121 0 26 chr1 37140555 37140708 -160054724 - B1_Mur3 SINE Alu 0 149 1 3 868 422 226 147 27 chr1 37141741 37141891 -160053541 - Lx8 LINE L1 -718 6755 6588 3 868 288 0 0 0 chr1 37142365 37142397 -160053035 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 868 579 313 89 69 chr1 37142449 37142898 -160052534 - MER31B LTR ERV1 -4 462 5 3 868 822 219 0 14 chr1 37142924 37143072 -160052360 - B1_Mur2 SINE Alu -1 148 3 3 868 575 284 25 13 chr1 37143426 37143583 -160051849 - RMER15 LTR ERVL -162 413 255 3 868 308 257 27 0 chr1 37143613 37143687 -160051745 - RMER15 LTR ERVL -437 138 63 3 868 2617 70 25 3 chr1 37143693 37144054 -160051378 - L1_Mus3 LINE L1 0 6638 6270 3 868 253 330 11 21 chr1 37144170 37144263 -160051169 - MIR SINE MIR 0 262 171 3 868 200 354 24 24 chr1 37144325 37144409 -160051023 - MIR SINE MIR -116 146 63 3 868 254 29 29 0 chr1 37144940 37144975 -160050457 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 3 868 252 250 0 0 chr1 37145035 37145091 -160050341 - MIRm SINE MIR -161 115 60 3 868 336 319 95 33 chr1 37146021 37146326 -160049106 + L1MEc LINE L1 134 457 -5943 3 868 283 234 13 0 chr1 37146504 37146581 -160048851 + L1MEc LINE L1 768 845 -5555 3 868 509 0 16 0 chr1 37146605 37146666 -160048766 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 868 1360 259 44 29 chr1 37146743 37147153 -160048279 + MTD LTR MaLR 1 416 -3 3 868 285 276 38 9 chr1 37147186 37147292 -160048140 + L1M3e LINE L1 226 334 -6696 3 868 564 315 11 22 chr1 37148304 37148395 -160047037 + RMER30 DNA MER1_type 2 92 -110 3 868 306 0 0 0 chr1 37148395 37148429 -160047003 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 868 372 43 0 0 chr1 37148437 37148483 -160046949 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 868 817 261 53 0 chr1 37148487 37148675 -160046757 - B3 SINE B2 -18 198 1 3 868 564 315 11 22 chr1 37148675 37148751 -160046681 + RMER30 DNA MER1_type 98 175 -27 3 868 618 303 121 52 chr1 37148774 37149352 -160046080 + L1M3e LINE L1 3813 4430 -2673 3 868 261 217 78 107 chr1 37149460 37149511 -160045921 + PB1D7 SINE Alu 20 118 -1 3 868 274 125 0 59 chr1 37149511 37149562 -160045870 + B4A SINE B4 177 224 -68 3 868 216 135 0 0 chr1 37149563 37149600 -160045832 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 868 248 111 43 22 chr1 37150667 37150713 -160044719 + B3A SINE B2 2 48 -150 3 868 428 299 44 7 chr1 37150755 37150890 -160044542 + B1F1 SINE Alu 2 141 -8 3 868 254 303 81 18 chr1 37150890 37150993 -160044439 + L1MEc LINE L1 4960 5070 -1249 3 868 1752 172 78 11 chr1 37151155 37151502 -160043930 + ORR1D1 LTR MaLR 4 373 -1 3 868 1033 108 208 31 chr1 37151613 37151805 -160043627 - URR1A DNA MER1_type 0 226 1 3 868 790 143 38 0 chr1 37152041 37152174 -160043258 - B1_Mur4 SINE Alu -4 146 9 3 868 432 238 297 6 chr1 37152217 37152382 -160043050 - B3 SINE B2 -3 213 1 3 868 186 43 0 0 chr1 37152916 37152939 -160042493 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 868 255 31 0 0 chr1 37153530 37153562 -160041870 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 3 868 1470 53 0 64 chr1 37155383 37155425 -160040007 - B2_Mm2 SINE B2 -4 191 162 3 868 252 0 0 0 chr1 37155425 37155453 -160039979 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3 868 1470 53 0 64 chr1 37155453 37155613 -160039819 - B2_Mm2 SINE B2 -34 161 2 3 868 327 25 0 0 chr1 37155618 37155658 -160039774 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 3 868 1009 216 2 10 chr1 37155664 37155862 -160039570 - B3A SINE B2 -16 200 9 3 868 1474 215 133 3 chr1 37155874 37156228 -160039204 + MTD LTR MaLR 6 405 -14 3 868 341 198 8 57 chr1 37156248 37156366 -160039066 + B1_Mm SINE Alu 14 146 -1 3 868 238 26 51 0 chr1 37156367 37156406 -160039026 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 3 868 330 335 122 26 chr1 37156464 37156620 -160038812 + MER2B DNA MER2_type 155 325 -11 3 868 1140 51 0 7 chr1 37157049 37157187 -160038245 + B1_Mm SINE Alu 2 138 -9 3 868 261 0 0 0 chr1 37157187 37157216 -160038216 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 868 231 241 145 48 chr1 37157231 37157314 -160038118 - MIRc SINE MIR -157 111 21 3 868 3955 156 48 16 chr1 37158160 37158831 -160036601 - RLTR17 LTR ERVK 0 692 1 3 868 408 282 14 29 chr1 37159427 37159557 -160035875 - MLT1A1 LTR MaLR -5 403 227 3 868 1422 223 57 63 chr1 37159726 37160075 -160035357 + MTEa LTR MaLR 19 365 -14 3 868 380 245 95 11 chr1 37160166 37160261 -160035171 - MLT1A1 LTR MaLR -305 103 1 3 868 795 195 0 0 chr1 37160385 37160639 -160034793 + (TG)n Simple_repeat Simple_repeat 1 254 0 3 868 1098 196 148 15 chr1 37160642 37160906 -160034526 - RLTR25B LTR ERVK 0 1028 730 3 868 3212 161 22 11 chr1 37160906 37161440 -160033992 - RLTR25B LTR ERVK -487 541 2 3 868 401 284 6 0 chr1 37161441 37161610 -160033822 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 868 247 289 161 12 chr1 37163765 37163926 -160031506 + L2 LINE L2 1603 1787 -1632 3 868 789 180 0 0 chr1 37163926 37164155 -160031277 + (TG)n Simple_repeat Simple_repeat 1 229 0 3 868 898 249 37 70 chr1 37164196 37164494 -160030938 - B4A SINE B4 0 292 5 3 868 346 269 11 21 chr1 37164767 37164862 -160030570 + C-rich Low_complexity Low_complexity 5 98 0 3 868 782 299 49 42 chr1 37166226 37166512 -160028920 - B4A SINE B4 -4 288 1 3 868 286 343 82 17 chr1 37166918 37167092 -160028340 + MIR SINE MIR 38 221 -41 3 868 296 267 70 49 chr1 37167382 37167524 -160027908 - L1MEc LINE L1 -2505 3814 3670 3 868 362 335 66 35 chr1 37167804 37167869 -160027563 - L1MEc LINE L1 -4094 2306 2244 3 868 1270 113 32 0 chr1 37167869 37168054 -160027378 - B2_Mm1t SINE B2 -2 191 1 3 868 362 335 66 35 chr1 37168054 37168276 -160027156 - L1MEc LINE L1 -4157 2243 2010 3 868 246 307 42 6 chr1 37168356 37168486 -160026946 - L1MEc LINE L1 -4505 1910 1741 3 868 422 114 0 14 chr1 37168522 37168593 -160026839 + (TCC)n Simple_repeat Simple_repeat 3 72 0 3 868 402 194 49 12 chr1 37168845 37169007 -160026425 + CT-rich Low_complexity Low_complexity 3 170 0 3 868 23 0 0 0 chr1 37169292 37169315 -160026117 + AT_rich Low_complexity Low_complexity 1 23 0 3 868 1351 294 69 9 chr1 37169323 37169786 -160025646 - Lx8 LINE L1 -2 7471 6981 3 868 237 65 0 0 chr1 37170938 37170969 -160024463 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 868 603 292 0 19 chr1 37170975 37171132 -160024300 - B3A SINE B2 -44 154 1 3 868 788 271 59 8 chr1 37172831 37173069 -160022363 - MER2 DNA MER2_type -4 341 92 3 868 377 272 137 63 chr1 37173165 37173420 -160022012 - B4 SINE B4 -18 274 1 3 868 207 69 0 0 chr1 37173430 37173459 -160021973 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 868 318 318 23 23 chr1 37174466 37174595 -160020837 - L1MD3 LINE L1 -272 7723 7595 3 868 234 257 53 13 chr1 37174627 37174702 -160020730 - ID4 SINE ID -4 79 2 3 868 291 333 0 9 chr1 37174713 37174726 -160020706 - ID_B1 SINE B4 -33 191 82 3 868 363 278 0 10 chr1 37174726 37174824 -160020608 - PB1D10 SINE Alu -20 97 1 3 868 245 260 78 0 chr1 37174824 37174900 -160020532 - PB1D10 SINE Alu -6 111 30 3 868 311 369 68 48 chr1 37174958 37175311 -160020121 - L1MDa LINE L1 -2973 3564 3205 3 868 626 101 20 0 chr1 37175311 37175410 -160020022 + (TTTC)n Simple_repeat Simple_repeat 3 103 0 3 868 1192 55 7 0 chr1 37175411 37175556 -160019876 - B1_Mus1 SINE Alu -1 147 2 3 868 291 28 0 0 chr1 37175577 37175613 -160019819 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 868 1206 43 0 0 chr1 37175615 37175756 -160019676 - B1_Mus2 SINE Alu -6 141 1 3 868 1262 109 40 0 chr1 37175756 37175930 -160019502 - B2_Mm2 SINE B2 -12 183 2 3 868 502 263 34 54 chr1 37176114 37176319 -160019113 - L1MDa LINE L1 -3592 2945 2745 3 868 421 239 55 0 chr1 37176326 37176435 -160018997 + PB1D10 SINE Alu 3 117 0 3 868 457 279 31 131 chr1 37177161 37177512 -160017920 - L1MDa LINE L1 -4706 1927 1612 3 868 286 322 123 39 chr1 37177566 37177721 -160017711 - B3A SINE B2 -30 168 1 3 868 293 280 146 18 chr1 37177831 37178002 -160017430 - L1MDa LINE L1 -5388 1152 960 3 868 1145 88 0 0 chr1 37178308 37178455 -160016977 + B1_Mus1 SINE Alu 1 147 -1 3 868 237 330 54 31 chr1 37179235 37179457 -160015975 + MLT1N2 LTR MaLR 317 543 -19 3 868 656 297 65 36 chr1 37179806 37180115 -160015317 - MER2 DNA MER2_type 0 345 14 4 868 828 0 0 0 chr1 37180603 37180695 -160014737 + (TTCCC)n Simple_repeat Simple_repeat 3 94 0 4 868 384 291 44 7 chr1 37180986 37181121 -160014311 + B1F SINE Alu 1 140 -9 4 868 316 243 0 14 chr1 37181146 37181217 -160014215 + ID4_ SINE ID 1 70 -13 4 868 251 259 164 42 chr1 37182807 37182972 -160012460 + MIRc SINE MIR 19 203 -65 4 868 220 289 81 20 chr1 37183015 37183114 -160012318 - L2a LINE L2 -49 3377 3273 4 868 252 59 0 0 chr1 37184291 37184325 -160011107 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 868 982 38 8 0 chr1 37184325 37184458 -160010974 - B1_Mus1 SINE Alu -9 139 6 4 868 297 234 0 15 chr1 37184843 37184908 -160010524 - ORR1B2 LTR MaLR -2 376 313 4 868 830 160 0 64 chr1 37184915 37185102 -160010330 - ORR1B2 LTR MaLR -192 175 1 4 868 428 252 20 0 chr1 37185613 37185712 -160009720 - B3 SINE B2 -2 214 114 4 868 246 105 0 0 chr1 37185933 37185971 -160009461 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 4 868 381 277 121 0 chr1 37186231 37186372 -160009060 - B3 SINE B2 -4 212 55 4 868 784 55 0 27 chr1 37186372 37186484 -160008948 + B1_Mus1 SINE Alu 40 148 0 4 868 362 152 0 15 chr1 37186517 37186584 -160008848 - B3 SINE B2 -149 67 2 4 868 29 0 0 0 chr1 37186819 37186848 -160008584 + AT_rich Low_complexity Low_complexity 1 29 0 4 868 180 0 0 0 chr1 37187279 37187299 -160008133 + (T)n Simple_repeat Simple_repeat 1 20 0 4 868 1232 54 0 0 chr1 37187299 37187446 -160007986 - B1_Mus1 SINE Alu 0 148 2 4 868 314 234 103 94 chr1 37187661 37187864 -160007568 + L1MD LINE L1 4835 5039 -1107 4 868 281 250 12 24 chr1 37188019 37188101 -160007331 + ID4_ SINE ID 1 81 -2 4 868 416 202 88 12 chr1 37188180 37188340 -160007092 + (CAGGC)n Simple_repeat Simple_repeat 2 173 0 4 868 551 302 95 4 chr1 37188460 37188713 -160006719 + L1MD LINE L1 5406 5681 -678 4 868 379 306 37 24 chr1 37188954 37189118 -160006314 + L1ME1 LINE L1 3701 3866 -2280 4 868 732 178 85 8 chr1 37189154 37189327 -160006105 - B3 SINE B2 -6 210 2 4 868 313 257 0 0 chr1 37189433 37189503 -160005929 - Lx8 LINE L1 -141 7332 7263 4 868 764 211 114 0 chr1 37189553 37189728 -160005704 + B3 SINE B2 3 197 -19 4 868 315 212 0 0 chr1 37190103 37190183 -160005249 + (TAA)n Simple_repeat Simple_repeat 2 81 0 4 868 268 300 14 12 chr1 37190260 37190367 -160005065 + L1ME1 LINE L1 4530 4637 -1509 4 868 518 307 77 32 chr1 37190367 37190658 -160004774 + B4A SINE B4 8 292 0 4 868 252 200 0 0 chr1 37190660 37190715 -160004717 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 868 428 303 0 0 chr1 37190791 37190890 -160004542 - PB1D10 SINE Alu -13 104 6 4 868 355 341 68 4 chr1 37190901 37191151 -160004281 + L1ME1 LINE L1 5083 5348 -798 4 868 299 225 20 92 chr1 37191157 37191255 -160004177 + PB1D10 SINE Alu 27 117 0 4 868 830 286 107 65 chr1 37191257 37191886 -160003546 + L1ME1 LINE L1 5347 6001 -178 4 868 810 144 49 60 chr1 37192014 37192199 -160003233 - B2_Mm2 SINE B2 -4 191 9 4 868 220 253 13 39 chr1 37193483 37193561 -160001871 + MIRc SINE MIR 77 152 -116 4 868 180 125 0 0 chr1 37193735 37193767 -160001665 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 868 225 0 0 0 chr1 37193785 37193810 -160001622 + (T)n Simple_repeat Simple_repeat 1 25 0 4 868 892 320 95 66 chr1 37195021 37195855 -159999577 - L1MD2 LINE L1 -106 6253 5396 4 868 290 298 176 4 chr1 37195941 37196180 -159999252 - L1MD2 LINE L1 -856 5290 5011 4 868 456 165 17 9 chr1 37196225 37196341 -159999091 + CT-rich Low_complexity Low_complexity 2 118 0 4 868 46 54 0 0 chr1 37196401 37196475 -159998957 + AT_rich Low_complexity Low_complexity 1 74 0 4 868 1792 150 8 53 chr1 37196476 37196835 -159998597 - RLTR15 LTR ERVK -16 343 1 4 868 24 0 0 0 chr1 37196835 37196859 -159998573 + AT_rich Low_complexity Low_complexity 1 24 0 4 868 783 247 92 24 chr1 37197016 37197265 -159998167 - MTD LTR MaLR -148 271 6 4 868 229 254 17 0 chr1 37197339 37197398 -159998034 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 4 868 194 260 14 0 chr1 37197415 37197488 -159997944 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 868 192 125 0 0 chr1 37197556 37197588 -159997844 + (CATG)n Simple_repeat Simple_repeat 1 32 0 4 868 498 251 117 68 chr1 37197598 37197858 -159997574 - B4 SINE B4 -9 283 3 4 868 578 286 143 4 chr1 37200445 37200710 -159994722 + MER2 DNA MER2_type 1 302 -43 4 868 876 276 106 17 chr1 37200810 37201160 -159994272 + Lx8 LINE L1 7087 7467 -6 4 868 266 255 207 9 chr1 37201519 37201630 -159993802 + RSINE1 SINE B4 3 135 -30 4 868 1402 307 97 39 chr1 37201924 37202874 -159992558 + L1_Rod LINE L1 4843 5847 0 4 868 689 277 55 27 chr1 37202891 37203110 -159992322 - ORR1D2 LTR MaLR -2 368 144 4 868 23 33 0 0 chr1 37203110 37203140 -159992292 + AT_rich Low_complexity Low_complexity 1 30 0 4 868 1060 132 6 0 chr1 37203140 37203314 -159992118 + L1_Mur1 LINE L1 1989 2163 -3723 4 868 326 307 11 18 chr1 37203312 37203440 -159991992 - L1M1 LINE L1 -551 5605 5477 4 868 1429 98 0 5 chr1 37203485 37203680 -159991752 - B2_Mm2 SINE B2 -1 194 1 4 868 577 258 8 0 chr1 37203683 37203811 -159991621 - ORR1D2 LTR MaLR -221 149 21 4 868 2028 95 59 0 chr1 37204070 37204374 -159991058 + ORR1A2 LTR MaLR 1 322 -5 4 868 3219 127 9 26 chr1 37204762 37205296 -159990136 + RLTR11A LTR ERVK 1 525 -3 4 868 1268 105 39 0 chr1 37205297 37205478 -159989954 + B2_Mm2 SINE B2 1 188 -7 4 868 426 39 0 0 chr1 37205612 37205664 -159989768 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 868 344 236 42 0 chr1 37205700 37205772 -159989660 - B3A SINE B2 -121 77 3 4 868 549 226 85 64 chr1 37205783 37206019 -159989413 + L1MA7 LINE L1 5909 6149 -142 4 868 1233 64 36 36 chr1 37206096 37206130 -159989302 + B2_Mm2 SINE B2 1 34 -161 4 868 2473 70 35 0 chr1 37206130 37206446 -159988986 - ORR1A2 LTR MaLR 0 327 1 4 868 1233 64 36 36 chr1 37206446 37206605 -159988827 + B2_Mm2 SINE B2 35 194 -1 4 868 318 195 0 0 chr1 37207161 37207238 -159988194 + (CACCAT)n Simple_repeat Simple_repeat 5 81 0 4 868 456 259 22 22 chr1 37207548 37207562 -159987870 + ID_B1 SINE B4 91 221 0 4 868 551 179 68 0 chr1 37207562 37207679 -159987753 + B1F SINE Alu 24 148 -1 4 868 244 273 28 21 chr1 37207774 37207916 -159987516 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 4 868 472 250 11 0 chr1 37207917 37208093 -159987339 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 868 684 224 49 14 chr1 37208798 37209002 -159986430 + B3A SINE B2 1 206 -10 4 868 243 88 0 0 chr1 37209490 37209524 -159985908 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 868 267 304 17 26 chr1 37209561 37209676 -159985756 - RSINE1 SINE B4 -21 144 31 4 868 1225 186 5 5 chr1 37209715 37209926 -159985506 + B3 SINE B2 2 212 -4 4 868 237 132 0 0 chr1 37210074 37210112 -159985320 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4 868 414 0 0 0 chr1 37210534 37210580 -159984852 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 868 25 0 0 0 chr1 37210580 37210605 -159984827 + GC_rich Low_complexity Low_complexity 1 25 0 4 868 1046 109 0 7 chr1 37211524 37211671 -159983761 - B1_Mus1 SINE Alu -1 147 2 4 868 372 152 0 0 chr1 37212109 37212175 -159983257 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 868 332 60 0 20 chr1 37212251 37212302 -159983130 + HAL1-3A_ME LINE L1 1976 2025 -833 4 868 864 245 31 0 chr1 37213398 37213594 -159981838 + B3 SINE B2 2 203 -13 4 868 222 150 0 0 chr1 37213598 37213638 -159981794 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 868 206 61 82 0 chr1 37213837 37213886 -159981546 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 868 432 0 0 0 chr1 37215636 37215684 -159979748 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 868 763 118 15 7 chr1 37216080 37216203 -159979229 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 4 868 1223 41 0 7 chr1 37216203 37216351 -159979081 - B1_Mus2 SINE Alu 0 147 1 4 868 763 118 15 7 chr1 37216351 37216364 -159979068 + (TTTC)n Simple_repeat Simple_repeat 1 13 0 4 868 2853 89 18 3 chr1 37216702 37217094 -159978338 - MTB LTR MaLR 0 400 3 4 868 3572 111 38 14 chr1 37217699 37218250 -159977182 - LTRIS2 LTR ERV1 0 564 1 4 868 28 0 0 0 chr1 37218304 37218332 -159977100 + AT_rich Low_complexity Low_complexity 1 28 0 4 868 216 0 0 0 chr1 37218479 37218503 -159976929 + (T)n Simple_repeat Simple_repeat 1 24 0 4 868 424 118 0 34 chr1 37219510 37219598 -159975834 + G-rich Low_complexity Low_complexity 1 85 0 4 868 701 206 166 6 chr1 37219923 37220104 -159975328 - B3 SINE B2 -6 210 1 4 868 873 129 247 0 chr1 37221014 37221192 -159974240 + URR1A DNA MER1_type 5 226 0 4 868 399 321 109 54 chr1 37221432 37221745 -159973687 - L1MB5 LINE L1 -13 6161 5832 4 868 180 179 0 0 chr1 37223300 37223339 -159972093 + C-rich Low_complexity Low_complexity 1 39 0 4 868 513 0 0 0 chr1 37223750 37223807 -159971625 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 868 414 0 0 0 chr1 37223807 37223852 -159971580 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 869 228 86 0 0 chr1 37225825 37225860 -159969572 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 869 244 294 81 141 chr1 37226246 37226480 -159968952 - LTR33A LTR ERVL -275 245 26 4 869 201 267 17 0 chr1 37229063 37229123 -159966309 + (TATG)n Simple_repeat Simple_repeat 2 62 0 4 869 539 285 82 27 chr1 37229194 37229450 -159965982 - HAL1 LINE L1 -702 1805 1536 4 869 201 74 0 0 chr1 37229670 37229697 -159965735 + (T)n Simple_repeat Simple_repeat 1 27 0 4 869 1215 74 0 0 chr1 37229698 37229846 -159965586 - B1_Mus1 SINE Alu 0 148 1 4 869 342 0 0 0 chr1 37229985 37230023 -159965409 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 4 869 2041 197 49 7 chr1 37230055 37230460 -159964972 + Lx5 LINE L1 6614 7035 -15 5 869 303 85 0 0 chr1 37230461 37230508 -159964924 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 5 869 183 80 0 0 chr1 37230540 37230565 -159964867 + (GGA)n Simple_repeat Simple_repeat 1 25 0 5 869 234 360 27 0 chr1 37230899 37230974 -159964458 + Charlie22a DNA MER1_type 21 97 -394 5 869 225 108 0 0 chr1 37231161 37231198 -159964234 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 869 560 269 20 14 chr1 37231549 37231696 -159963736 + B1_Mur1 SINE Alu 2 149 0 5 869 839 61 9 0 chr1 37231766 37231880 -159963552 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 5 869 1350 135 13 63 chr1 37232500 37232737 -159962695 + URR1B DNA MER1_type 1 225 0 5 869 2587 68 12 0 chr1 37233404 37233727 -159961705 - ORR1A2 LTR MaLR 0 327 1 5 869 378 42 0 0 chr1 37234498 37234546 -159960886 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 869 459 258 43 50 chr1 37234598 37234737 -159960695 - B4A SINE B4 0 292 155 5 869 312 227 53 0 chr1 37234771 37234846 -159960586 - B4A SINE B4 -208 84 6 5 869 655 160 10 41 chr1 37235276 37235702 -159959730 + (TG)n Simple_repeat Simple_repeat 1 412 0 5 869 189 0 0 0 chr1 37235781 37235802 -159959630 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 869 593 214 94 0 chr1 37236735 37236852 -159958580 - B3 SINE B2 -86 130 3 5 869 300 323 44 29 chr1 37237169 37237306 -159958126 - MLT1A1 LTR MaLR -2 406 268 5 869 2292 88 82 0 chr1 37238064 37238394 -159957038 - IAPEY2_LTR LTR ERVK 0 357 1 5 869 304 188 100 0 chr1 37241013 37241093 -159954339 + B3 SINE B2 129 216 0 5 869 1270 172 5 0 chr1 37241404 37241608 -159953824 + B3 SINE B2 2 206 -10 5 869 528 30 0 0 chr1 37241608 37241674 -159953758 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 869 220 204 23 0 chr1 37244478 37244522 -159950910 + C-rich Low_complexity Low_complexity 3 47 0 5 869 292 197 0 16 chr1 37244530 37244592 -159950840 - PB1D9 SINE Alu -59 61 1 5 869 318 338 100 7 chr1 37246385 37246525 -159948907 - RLTR42-int LTR ERVK -3731 1791 1639 5 869 978 192 56 10 chr1 37246886 37247081 -159948351 - B3 SINE B2 -12 204 1 5 869 3163 56 8 8 chr1 37247101 37247497 -159947935 + MTA_Mm LTR MaLR 1 396 0 5 869 21 0 0 0 chr1 37248165 37248186 -159947246 + AT_rich Low_complexity Low_complexity 1 21 0 5 869 1134 267 76 36 chr1 37248475 37248832 -159946600 + MTD LTR MaLR 35 405 -14 5 869 237 79 0 95 chr1 37248799 37248841 -159946591 + ORR1D2 LTR MaLR 325 362 -8 5 869 3871 61 0 0 chr1 37249863 37250336 -159945096 + L1_Mus1 LINE L1 6095 6567 0 5 869 21 36 0 0 chr1 37250339 37250367 -159945065 + AT_rich Low_complexity Low_complexity 1 28 0 5 869 1155 211 0 0 chr1 37250415 37250609 -159944823 - B3 SINE B2 -11 205 12 5 869 949 247 107 18 chr1 37251002 37251295 -159944137 + MER2 DNA MER2_type 23 343 -2 5 869 294 73 0 0 chr1 37251751 37251792 -159943640 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 869 470 192 15 23 chr1 37252620 37252753 -159942679 + G-rich Low_complexity Low_complexity 2 133 0 5 869 255 31 0 0 chr1 37253384 37253416 -159942016 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 869 1120 57 43 0 chr1 37253430 37253571 -159941861 + B1_Mm SINE Alu 1 147 0 5 869 315 71 0 0 chr1 37253571 37253613 -159941819 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 5 869 291 28 0 0 chr1 37253613 37253649 -159941783 + (GAGAA)n Simple_repeat Simple_repeat 1 36 0 5 869 1094 178 28 14 chr1 37253929 37254140 -159941292 - URR1A DNA MER1_type -8 218 5 5 869 192 352 55 37 chr1 37254356 37254465 -159940967 - L2b LINE L2 -25 3350 3240 5 869 912 205 18 18 chr1 37255027 37255196 -159940236 + B3 SINE B2 1 169 -47 5 869 881 283 31 120 chr1 37255397 37255683 -159939749 + MTE2a LTR MaLR 1 262 -117 5 869 2093 125 111 0 chr1 37255683 37256034 -159939398 + ORR1B1 LTR MaLR 1 390 -4 5 869 881 283 31 120 chr1 37256034 37256064 -159939368 + MTE2a LTR MaLR 263 289 -90 5 869 619 280 6 0 chr1 37256066 37256234 -159939198 + L1MA5 LINE L1 5693 5861 -439 5 869 204 40 0 0 chr1 37256264 37256289 -159939143 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 869 585 236 95 0 chr1 37256317 37256465 -159938967 + Lx8 LINE L1 6772 6933 -540 5 869 459 245 67 55 chr1 37256465 37256629 -159938803 - RLTR23 LTR ERV1 0 430 265 5 869 696 231 58 6 chr1 37256942 37257116 -159938316 + Lx8 LINE L1 6930 7112 -361 5 869 1794 171 16 3 chr1 37257402 37257707 -159937725 - RLTR27 LTR ERVK 0 309 1 5 869 251 298 11 0 chr1 37258356 37258450 -159936982 - L1MC4 LINE L1 -11 8031 7937 5 869 483 259 17 33 chr1 37258515 37258635 -159936797 - PB1D7 SINE Alu -1 119 2 5 869 4188 143 103 80 chr1 37258683 37259562 -159935870 + RMER19B LTR ERVK 3 902 0 5 869 253 295 61 18 chr1 37259588 37259702 -159935730 - L1MC4 LINE L1 -246 7796 7678 5 869 423 310 33 93 chr1 37259980 37260201 -159935231 - MTE2a LTR MaLR -52 327 122 5 869 288 267 23 0 chr1 37260151 37260237 -159935195 + RLTR12B LTR ERVK 39 126 -442 5 869 1201 89 0 0 chr1 37260237 37260395 -159935037 + Lx3A LINE L1 5718 5875 -1134 5 869 4396 74 13 12 chr1 37260395 37260995 -159934437 + Lx3A LINE L1 6377 6977 -4 5 869 387 0 0 0 chr1 37261014 37261057 -159934375 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 869 558 205 35 52 chr1 37261065 37261254 -159934178 + RLTR12B LTR ERVK 102 304 -256 5 869 242 119 48 0 chr1 37261249 37261291 -159934141 + RLTR12B LTR ERVK 479 522 -6 5 869 1240 54 0 0 chr1 37261391 37261539 -159933893 + B1_Mus1 SINE Alu 1 148 0 5 869 271 152 0 145 chr1 37261547 37261616 -159933816 + B1_Mus2 SINE Alu 89 147 0 5 869 2238 286 129 12 chr1 37261626 37262468 -159932964 - Lx8 LINE L1 -32 7441 6501 5 869 573 260 137 50 chr1 37262496 37262537 -159932895 - B3A SINE B2 0 198 153 5 869 2905 94 7 7 chr1 37262537 37262946 -159932486 + RLTR9E LTR ERVK 1 409 0 5 869 573 260 137 50 chr1 37262946 37263086 -159932346 - B3A SINE B2 -46 152 1 5 869 394 180 123 62 chr1 37263215 37263239 -159932193 - MTD LTR MaLR -2 377 358 5 869 6882 71 20 1 chr1 37263239 37264115 -159931317 - RLTR13B1 LTR ERVK 0 893 1 5 869 1405 193 138 30 chr1 37264115 37264448 -159930984 - MTD LTR MaLR -23 396 23 5 869 432 336 85 4 chr1 37264520 37264792 -159930640 - L1M5 LINE L1 -1303 4843 4550 5 869 360 314 258 4 chr1 37264959 37265234 -159930198 - L1M5 LINE L1 -1840 4306 3962 5 869 297 0 0 0 chr1 37265329 37265362 -159930070 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 5 869 745 215 14 7 chr1 37265375 37265520 -159929912 + B3 SINE B2 2 147 -69 5 869 4362 52 7 33 chr1 37265524 37265980 -159929452 - LTRIS2 LTR ERV1 0 564 127 5 869 3373 30 22 0 chr1 37265980 37266382 -159929050 + IAPLTR2a LTR ERVK 1 411 0 5 869 4362 52 7 33 chr1 37266382 37266504 -159928928 - LTRIS2 LTR ERV1 -438 126 1 5 869 324 146 18 0 chr1 37266507 37266562 -159928870 + B3 SINE B2 153 208 -8 5 869 740 342 95 78 chr1 37266766 37267409 -159928023 - LTR41B LTR ERVL -91 667 14 5 869 189 171 0 0 chr1 37267507 37267542 -159927890 + CT-rich Low_complexity Low_complexity 2 36 0 5 869 563 261 33 60 chr1 37268274 37268309 -159927123 + B3A SINE B2 2 29 -169 5 869 1495 58 16 16 chr1 37268309 37268502 -159926930 - B2_Mm1a SINE B2 0 193 1 5 869 563 261 33 60 chr1 37268502 37268617 -159926815 + B3A SINE B2 30 148 -50 5 869 261 57 0 0 chr1 37268617 37268652 -159926780 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 869 878 186 16 47 chr1 37268683 37268875 -159926557 + B2_Mm2 SINE B2 1 186 -9 5 869 322 275 15 104 chr1 37269093 37269227 -159926205 - B1F SINE Alu -3 146 25 5 869 213 39 0 0 chr1 37269290 37269316 -159926116 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 869 549 194 0 0 chr1 37269325 37269423 -159926009 - B1_Mur2 SINE Alu -20 129 32 5 869 269 136 0 0 chr1 37269854 37269898 -159925534 + PB1D9 SINE Alu 66 109 -11 5 869 556 271 129 61 chr1 37269908 37270171 -159925261 + B4 SINE B4 2 282 -10 5 869 432 0 0 0 chr1 37271008 37271056 -159924376 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 869 628 322 85 4 chr1 37271519 37271778 -159923654 + B4A SINE B4 5 284 -8 5 869 209 167 32 48 chr1 37271837 37271900 -159923532 + (AAATG)n Simple_repeat Simple_repeat 3 64 0 5 869 301 350 90 35 chr1 37274017 37274162 -159921270 - HAL1-3A_ME LINE L1 -421 2437 2285 5 869 337 206 11 11 chr1 37274162 37274255 -159921177 + CT-rich Low_complexity Low_complexity 2 94 0 5 869 270 299 14 29 chr1 37274267 37274336 -159921096 - ID4_ SINE ID -12 71 4 5 869 554 265 58 31 chr1 37274501 37274522 -159920910 + CYRA11_Mm Unknown Y-chromosome 150 175 -442 5 869 1149 129 34 0 chr1 37274522 37274700 -159920732 - URR1A DNA MER1_type 0 226 43 5 869 249 139 0 0 chr1 37274989 37275032 -159920400 + (TCC)n Simple_repeat Simple_repeat 2 44 0 5 869 180 0 0 0 chr1 37275212 37275232 -159920200 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 869 23 33 0 0 chr1 37275903 37275933 -159919499 + AT_rich Low_complexity Low_complexity 1 30 0 5 869 450 0 0 0 chr1 37276177 37276227 -159919205 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 869 267 31 0 0 chr1 37277818 37277850 -159917582 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 869 387 0 0 0 chr1 37277936 37277979 -159917453 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 5 869 221 286 186 39 chr1 37278431 37278533 -159916899 + MIRb SINE MIR 17 133 -135 5 869 363 239 152 0 chr1 37278566 37278658 -159916774 - RSINE1 SINE B4 -56 109 4 5 869 352 299 47 16 chr1 37279583 37279712 -159915720 + MIR SINE MIR 112 244 -18 5 869 405 0 0 0 chr1 37279719 37279764 -159915668 + (TGG)n Simple_repeat Simple_repeat 1 45 0 5 869 395 239 288 31 chr1 37279791 37279951 -159915481 - ORR1D2 LTR MaLR -2 368 168 5 869 422 279 0 47 chr1 37279998 37280520 -159914912 + (CAG)n Simple_repeat Simple_repeat 1 497 0 5 869 763 287 43 51 chr1 37280520 37280777 -159914655 - ORR1D2 LTR MaLR -115 255 1 5 869 829 234 116 80 chr1 37280969 37281382 -159914050 - L1MB7 LINE L1 -16 6168 5741 5 869 345 159 0 0 chr1 37283049 37283112 -159912320 + GA-rich Low_complexity Low_complexity 1 63 0 5 869 271 363 141 24 chr1 37283786 37283992 -159911440 - LTR16E2 LTR ERVL -22 546 317 5 869 1337 234 47 36 chr1 37284582 37284778 -159910654 - MTD LTR MaLR -1 418 227 6 869 960 9 0 0 chr1 37284778 37284887 -159910545 + (TTC)n Simple_repeat Simple_repeat 1 109 0 6 869 1337 234 47 36 chr1 37284887 37285054 -159910378 - MTD LTR MaLR -193 226 53 6 869 1502 45 17 0 chr1 37285262 37285440 -159909992 + B2_Mm2 SINE B2 1 181 -14 6 869 1399 215 68 74 chr1 37285525 37285721 -159909711 + ORR1D2 LTR MaLR 1 204 -166 6 869 1030 103 14 0 chr1 37285721 37285867 -159909565 + B1_Mus1 SINE Alu 1 148 0 6 869 1399 215 68 74 chr1 37285867 37286037 -159909395 + ORR1D2 LTR MaLR 205 365 -5 6 869 1068 8 0 0 chr1 37286058 37286179 -159909253 + (TTC)n Simple_repeat Simple_repeat 2 122 0 6 869 1188 68 0 13 chr1 37286205 37286354 -159909078 - B1_Mus1 SINE Alu 0 148 2 6 869 212 361 33 8 chr1 37286557 37286677 -159908755 + L2 LINE L2 2685 2807 -612 6 869 1845 175 127 0 chr1 37286788 37287143 -159908289 + MTD LTR MaLR 1 400 -19 6 869 535 239 43 0 chr1 37287816 37287946 -159907486 - B1F1 SINE Alu -3 146 2 6 869 753 284 44 15 chr1 37288747 37288951 -159906481 + B3 SINE B2 1 210 -6 6 869 758 206 24 30 chr1 37289301 37289466 -159905966 - MTE2b LTR MaLR 0 379 216 6 869 341 23 0 161 chr1 37289510 37289721 -159905711 + (CACAT)n Simple_repeat Simple_repeat 4 180 0 6 869 327 18 0 162 chr1 37289818 37290022 -159905410 + (CACAT)n Simple_repeat Simple_repeat 1 171 0 6 869 632 268 70 39 chr1 37290026 37290255 -159905177 - MTE2b LTR MaLR -143 236 1 6 869 375 239 320 20 chr1 37290348 37290558 -159904874 + B4 SINE B4 7 277 -15 6 869 228 229 0 54 chr1 37290596 37290707 -159904725 + (CATATA)n Simple_repeat Simple_repeat 1 105 0 6 869 379 335 17 6 chr1 37290714 37290888 -159904544 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 869 388 286 123 31 chr1 37291368 37291498 -159903934 - RSINE1 SINE B4 -13 152 11 6 869 716 269 166 21 chr1 37291810 37292141 -159903291 + MTEa LTR MaLR 1 379 0 6 869 990 228 15 0 chr1 37292979 37293185 -159902247 + B3 SINE B2 1 209 -7 6 869 1426 68 5 40 chr1 37293204 37293403 -159902029 + B2_Mm1a SINE B2 2 193 0 6 869 366 291 58 0 chr1 37293869 37293972 -159901460 + PB1D10 SINE Alu 3 111 -6 6 869 480 35 0 0 chr1 37296499 37296557 -159898875 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 869 1070 170 70 142 chr1 37296633 37296715 -159898717 - RMER10B LTR ERVL 0 398 339 6 869 483 63 0 0 chr1 37296715 37296778 -159898654 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 869 1070 170 70 142 chr1 37296778 37297008 -159898424 - RMER10B LTR ERVL -60 338 109 6 869 3736 122 110 18 chr1 37297008 37297682 -159897750 + RMER17A LTR ERVK 1 736 -15 6 869 677 167 0 9 chr1 37297706 37297821 -159897611 - RMER10B LTR ERVL -284 114 1 6 869 616 230 6 69 chr1 37298311 37298470 -159896962 + RSINE1 SINE B4 3 151 -14 6 869 552 163 27 29 chr1 37299530 37299984 -159895448 + (TG)n Simple_repeat Simple_repeat 1 453 0 6 869 391 176 12 36 chr1 37300017 37300182 -159895250 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 869 191 202 33 11 chr1 37300197 37300287 -159895145 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 869 509 215 227 21 chr1 37300289 37300531 -159894901 - B4A SINE B4 0 292 1 6 869 468 224 12 0 chr1 37301006 37301091 -159894341 - ORR1E LTR MaLR -271 88 3 6 869 667 232 84 20 chr1 37301141 37301343 -159894089 - B3 SINE B2 0 216 2 6 869 486 270 123 35 chr1 37303112 37303147 -159892285 + B4 SINE B4 25 138 -154 6 869 247 321 116 54 chr1 37303147 37303259 -159892173 + B1_Mur1 SINE Alu 24 142 -7 6 869 486 270 123 35 chr1 37303259 37303291 -159892141 + B4 SINE B4 139 250 -42 6 869 358 206 44 0 chr1 37303265 37303333 -159892099 + B3 SINE B2 7 77 -139 6 869 480 130 0 38 chr1 37303355 37303435 -159891997 + ORR1B1 LTR MaLR 41 117 -277 6 869 1927 128 11 96 chr1 37303437 37303801 -159891631 + ORR1B1 LTR MaLR 62 394 0 6 869 1492 88 0 5 chr1 37304421 37304615 -159890817 + B2_Mm2 SINE B2 2 194 -1 6 869 405 0 0 0 chr1 37305309 37305354 -159890078 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 869 209 241 33 44 chr1 37305621 37305712 -159889720 + C-rich Low_complexity Low_complexity 3 92 0 6 869 816 88 0 0 chr1 37306012 37306126 -159889306 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 6 869 1479 45 17 0 chr1 37306131 37306308 -159889124 - B2_Mm2 SINE B2 -15 180 1 6 869 1258 29 0 0 chr1 37306851 37306991 -159888441 + B1_Mm SINE Alu 1 140 -7 6 869 582 118 9 26 chr1 37307001 37307114 -159888318 + GA-rich Low_complexity Low_complexity 5 115 0 6 869 21 0 0 0 chr1 37307795 37307816 -159887616 + AT_rich Low_complexity Low_complexity 1 21 0 6 869 728 178 0 7 chr1 37308284 37308431 -159887001 + CT-rich Low_complexity Low_complexity 2 147 0 6 869 526 281 106 21 chr1 37308436 37308625 -159886807 - MTD LTR MaLR -214 205 1 6 869 853 256 96 27 chr1 37308739 37309000 -159886432 - B4A SINE B4 -12 280 2 6 869 267 353 143 0 chr1 37309127 37309246 -159886186 + MLT1D LTR MaLR 325 460 -45 6 869 579 237 103 34 chr1 37309346 37309521 -159885911 + MTD LTR MaLR 1 187 -232 6 869 454 153 11 45 chr1 37309495 37309584 -159885848 + MTD LTR MaLR 303 388 -31 6 869 2377 97 0 3 chr1 37309587 37309907 -159885525 - ORR1A2 LTR MaLR -8 319 1 6 869 428 263 30 0 chr1 37309942 37310041 -159885391 - PB1D10 SINE Alu -14 103 2 6 869 693 90 554 27 chr1 37311021 37311169 -159884263 - URR1A DNA MER1_type 0 226 1 6 869 333 274 126 58 chr1 37312423 37312597 -159882835 - ORR1E LTR MaLR -188 186 1 6 869 216 86 0 0 chr1 37312965 37313000 -159882432 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 6 869 387 241 0 0 chr1 37313080 37313242 -159882190 + (TTGG)n Simple_repeat Simple_repeat 1 162 0 6 869 202 195 0 0 chr1 37313245 37313286 -159882146 + (TGGG)n Simple_repeat Simple_repeat 3 43 0 6 869 303 245 0 0 chr1 37313288 37313435 -159881997 + (TTGG)n Simple_repeat Simple_repeat 4 150 0 6 869 187 292 45 15 chr1 37313497 37313563 -159881869 + MIRc SINE MIR 57 124 -144 6 869 1692 190 142 19 chr1 37313581 37313608 -159881824 - RMER15 LTR ERVL 0 575 533 6 869 491 0 0 17 chr1 37313608 37313668 -159881764 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 869 1692 190 142 19 chr1 37313668 37314005 -159881427 - RMER15 LTR ERVL -43 532 166 6 869 1237 78 8 17 chr1 37314006 37314238 -159881194 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 6 869 1156 76 14 0 chr1 37314241 37314386 -159881046 - B1_Mus1 SINE Alu 0 148 2 6 869 180 0 0 0 chr1 37314427 37314447 -159880985 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 869 740 164 7 52 chr1 37314447 37314601 -159880831 - RMER15 LTR ERVL -391 184 38 6 869 649 232 107 24 chr1 37315439 37315607 -159879825 - B3A SINE B2 -16 182 1 6 869 733 66 274 0 chr1 37315939 37316045 -159879387 + B1_Mus2 SINE Alu 2 136 -11 6 869 306 0 0 0 chr1 37316045 37316079 -159879353 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 869 859 294 85 76 chr1 37316556 37316884 -159878548 + MER2 DNA MER2_type 14 344 -1 6 869 21 0 0 0 chr1 37317274 37317295 -159878137 + AT_rich Low_complexity Low_complexity 1 21 0 6 869 309 197 82 0 chr1 37317308 37317369 -159878063 + ID4 SINE ID 5 70 -13 6 869 22 0 0 0 chr1 37318967 37318989 -159876443 + GC_rich Low_complexity Low_complexity 1 22 0 6 869 227 296 0 0 chr1 37319088 37319142 -159876290 + MIRm SINE MIR 122 175 -101 6 869 461 277 23 0 chr1 37319228 37319358 -159876074 - B3A SINE B2 -3 195 63 6 869 2688 148 22 10 chr1 37319358 37319774 -159875658 - MTC LTR MaLR 0 421 1 6 869 425 287 17 25 chr1 37319804 37319922 -159875510 - PB1 SINE Alu -9 118 2 6 869 360 0 0 0 chr1 37319930 37319970 -159875462 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 869 984 145 38 22 chr1 37320032 37320215 -159875217 + B2_Mm2 SINE B2 1 186 -9 6 869 229 200 127 84 chr1 37320285 37320337 -159875095 + ID4_ SINE ID 7 66 -17 6 869 192 40 0 0 chr1 37320337 37320362 -159875070 + (CAA)n Simple_repeat Simple_repeat 2 26 0 6 869 229 200 127 84 chr1 37320362 37320380 -159875052 + ID4_ SINE ID 67 80 -3 6 869 225 317 31 70 chr1 37320382 37320511 -159874921 + MER99 DNA hAT? 470 593 -238 6 869 1325 170 0 0 chr1 37320950 37321156 -159874276 + B3 SINE B2 3 208 -8 6 869 295 267 13 0 chr1 37321428 37321503 -159873929 + CT-rich Low_complexity Low_complexity 4 79 0 6 869 241 346 105 77 chr1 37322298 37322661 -159872771 - LTR50 LTR ERVL -324 471 99 6 869 305 264 114 34 chr1 37322784 37322933 -159872499 + L1MC4a LINE L1 5686 5846 -598 6 869 283 333 77 55 chr1 37323107 37323131 -159872301 - YREP_Mm Unknown Unknown -1476 336 260 6 869 742 255 8 8 chr1 37323131 37323295 -159872137 + ID_B1 SINE B4 81 248 -44 6 869 283 333 77 55 chr1 37323295 37323342 -159872090 - YREP_Mm Unknown Unknown -1476 259 97 6 869 362 284 115 36 chr1 37323344 37323622 -159871810 + L1MC4a LINE L1 6193 6492 -1293 6 869 718 267 118 71 chr1 37323655 37323893 -159871539 - MTE2a LTR MaLR -61 318 70 6 869 391 281 193 62 chr1 37324101 37324552 -159870880 + L1MC4a LINE L1 6603 7112 -770 6 869 424 293 53 5 chr1 37324950 37325139 -159870293 - L1ME3 LINE L1 -55 6107 5910 6 869 192 328 86 36 chr1 37325309 37325448 -159869984 - L3 LINE CR1 -1009 3480 3335 6 869 229 273 0 57 chr1 37325515 37325585 -159869847 - L2 LINE L2 -521 2898 2833 6 869 562 284 35 126 chr1 37325670 37325956 -159869476 + MTD LTR MaLR 1 257 -162 6 869 317 334 167 45 chr1 37326031 37326385 -159869047 + MLT1M LTR MaLR 11 407 -265 6 869 537 30 0 0 chr1 37326594 37326661 -159868771 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 869 1060 261 119 41 chr1 37327102 37327445 -159867987 + ORR1D2 LTR MaLR 1 370 0 6 869 700 283 121 101 chr1 37327812 37328289 -159867143 + MT2A LTR ERVL 1 490 -43 6 869 198 0 0 0 chr1 37328289 37328311 -159867121 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 869 700 283 121 101 chr1 37328311 37328356 -159867076 + MT2A LTR ERVL 491 533 0 6 869 1330 179 74 24 chr1 37328623 37328920 -159866512 - Lx3C LINE L1 -4 6972 6661 6 869 255 246 18 0 chr1 37329489 37329546 -159865886 + Zaphod2 DNA Tip100 154 211 -3313 6 869 770 228 74 19 chr1 37329861 37330037 -159865395 + B3 SINE B2 47 216 0 6 869 244 281 18 0 chr1 37330133 37330190 -159865242 - Zaphod2 DNA Tip100 -3313 211 154 6 869 266 180 20 0 chr1 37330810 37330860 -159864572 + MLT1A1 LTR MaLR 299 349 -59 6 869 351 218 172 0 chr1 37330843 37330930 -159864502 - PB1D7 SINE Alu -11 109 8 7 869 2016 85 26 159 chr1 37331401 37331778 -159863654 - ORR1A2 LTR MaLR 0 327 1 7 869 679 199 0 54 chr1 37332393 37332542 -159862890 + B1_Mur1 SINE Alu 9 149 0 7 869 277 247 52 0 chr1 37332700 37332713 -159862719 + MLT1A1 LTR MaLR 269 281 -127 7 869 2292 93 18 33 chr1 37332713 37332994 -159862438 + ORR1A2 LTR MaLR 1 286 -41 7 869 1045 88 0 7 chr1 37332994 37333132 -159862300 + B1_Mus1 SINE Alu 1 137 -11 7 869 696 24 0 0 chr1 37333132 37333214 -159862218 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 869 2272 93 18 33 chr1 37333214 37333263 -159862169 + ORR1A2 LTR MaLR 287 326 -1 7 869 273 247 52 0 chr1 37333263 37333326 -159862106 + MLT1A1 LTR MaLR 282 348 -60 7 869 268 83 20 20 chr1 37333409 37333458 -159861974 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 7 869 367 263 7 145 chr1 37333470 37333522 -159861910 - PB1 SINE Alu 0 127 94 7 869 513 241 78 28 chr1 37333522 37333663 -159861769 - B1_Mur3 SINE Alu 0 149 2 7 869 367 263 7 145 chr1 37333663 37333748 -159861684 - PB1 SINE Alu -34 93 9 7 869 340 188 0 15 chr1 37333753 37333818 -159861614 + MLT1A1 LTR MaLR 344 407 -1 7 869 1272 235 48 37 chr1 37334242 37334618 -159860814 - RLTR14 LTR ERV1 -2 380 1 7 869 3097 69 35 2 chr1 37334687 37335081 -159860351 + MTB_Mm LTR MaLR 1 407 0 7 869 459 259 74 0 chr1 37335154 37335262 -159860170 + RSINE1 SINE B4 50 165 0 7 869 429 255 168 0 chr1 37335316 37335465 -159859967 - MTEa LTR MaLR -43 336 163 7 869 275 260 58 101 chr1 37335479 37335650 -159859782 - RLTR25B LTR ERVK 0 1028 868 7 869 2126 108 3 72 chr1 37335650 37336010 -159859422 - IAPLTR1a_Mm LTR ERVK -2 335 1 7 869 275 260 58 101 chr1 37336010 37336026 -159859406 - RLTR25B LTR ERVK -161 867 849 7 869 26280 16 10 0 chr1 37336026 37338938 -159856494 - IAPEz-int LTR ERVK -16 6465 3525 7 869 951 80 24 0 chr1 37338938 37339063 -159856369 - IAPEz-int LTR ERVK -2770 4910 4783 7 869 1831 119 4 4 chr1 37339058 37339320 -159856112 - IAPEz-int LTR ERVK -5183 2497 2236 7 869 460 66 0 32 chr1 37339309 37339372 -159856060 - IAPEz-int LTR ERVK -5062 1419 1359 7 869 3419 79 5 17 chr1 37339372 37339949 -159855483 - IAPEz-int LTR ERVK -5819 662 168 7 869 226 339 0 0 chr1 37339949 37340005 -159855427 - RLTR27 LTR ERVK -34 275 220 7 869 469 122 80 125 chr1 37340005 37340117 -159855315 - IAPEz-int LTR ERVK -6369 112 6 7 869 2105 103 3 73 chr1 37340117 37340474 -159854958 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 869 397 341 52 89 chr1 37340674 37340999 -159854433 - RLTR25A LTR ERVK -789 314 2 7 869 347 279 71 32 chr1 37340999 37341123 -159854309 - MTEa LTR MaLR -245 134 6 7 869 399 113 0 0 chr1 37341839 37341901 -159853531 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 869 3606 63 129 10 chr1 37342237 37342750 -159852682 - MT2B2 LTR ERVL -8 576 3 7 869 326 340 12 24 chr1 37343044 37343210 -159852222 + RSINE1 SINE B4 2 165 0 7 869 231 88 0 0 chr1 37343212 37343246 -159852186 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 869 396 326 0 7 chr1 37343426 37343562 -159851870 + L1MA10 LINE L1 6193 6327 -7 7 869 732 209 22 0 chr1 37343651 37343785 -159851647 + ID_B1 SINE B4 86 222 -2 7 869 821 221 75 5 chr1 37344420 37344620 -159850812 + B3 SINE B2 3 216 0 7 869 665 241 112 29 chr1 37344735 37344940 -159850492 + ID_B1 SINE B4 2 223 -1 7 869 218 175 0 0 chr1 37344994 37345034 -159850398 + C-rich Low_complexity Low_complexity 1 40 0 7 869 380 309 45 13 chr1 37345528 37345682 -159849750 - MER5A1 DNA MER1_type -3 163 5 7 869 704 234 98 79 chr1 37345840 37346105 -159849327 - RLTR28B LTR ERVL -144 337 68 7 869 1055 80 7 0 chr1 37346107 37346245 -159849187 + B1_Mus1 SINE Alu 2 140 -8 7 869 256 48 48 0 chr1 37346245 37346287 -159849145 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 869 393 176 13 13 chr1 37346306 37346381 -159849051 + MTC LTR MaLR 330 404 -17 7 869 1085 301 102 56 chr1 37346403 37347228 -159848204 - L1M4 LINE L1 -4824 1822 952 7 869 960 151 14 0 chr1 37347228 37347374 -159848058 - B1_Mur4 SINE Alu -1 149 2 7 869 736 262 21 136 chr1 37347504 37347835 -159847597 - ORR1E LTR MaLR 0 359 67 7 869 357 342 0 55 chr1 37347857 37347984 -159847448 + B1F SINE Alu 10 129 -20 7 869 619 219 34 74 chr1 37348029 37348131 -159847301 - B1_Mur1 SINE Alu -6 143 38 7 869 2309 77 56 15 chr1 37348131 37348472 -159846960 + RLTR15 LTR ERVK 1 355 -4 7 869 619 219 34 74 chr1 37348472 37348517 -159846915 - B1_Mur1 SINE Alu -112 37 2 7 869 3490 127 210 8 chr1 37349192 37349805 -159845627 + RMER19A LTR ERVK 1 737 0 7 869 1330 216 197 95 chr1 37349822 37350094 -159845338 + MT2A LTR ERVL 1 265 -268 7 869 3056 73 27 12 chr1 37350094 37350495 -159844937 + MTB_Mm LTR MaLR 1 407 0 7 869 7063 102 12 80 chr1 37350495 37351673 -159843759 + MTB_Mm-int LTR MaLR 1 1098 0 7 869 2971 88 20 12 chr1 37351673 37352075 -159843357 + MTB_Mm LTR MaLR 1 405 -2 7 869 1330 216 197 95 chr1 37352075 37352282 -159843150 + MT2A LTR ERVL 266 529 -4 7 869 1074 262 150 11 chr1 37352285 37352651 -159842781 + MTD LTR MaLR 1 417 -2 7 869 283 310 64 81 chr1 37353063 37353298 -159842134 - L1M4 LINE L1 -5750 792 562 7 869 1062 215 5 0 chr1 37353317 37353531 -159841901 - B3 SINE B2 -1 215 1 7 869 234 203 157 14 chr1 37353668 37353738 -159841694 - L1M4 LINE L1 -5987 555 476 7 869 234 0 0 0 chr1 37353746 37353772 -159841660 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 869 488 289 44 101 chr1 37354251 37354409 -159841023 - RSINE1 SINE B4 -1 164 16 7 108 1763 196 75 8 chr1 37355383 37355759 -159839673 + MTD LTR MaLR 18 418 -1 7 870 275 224 11 45 chr1 37355761 37355850 -159839582 - MER94 DNA AcHobo -5 129 44 7 870 248 281 0 0 chr1 37356020 37356077 -159839355 + B4 SINE B4 84 140 -152 7 870 334 254 189 0 chr1 37356026 37356148 -159839284 + B1F SINE Alu 5 149 0 7 870 209 213 0 0 chr1 37356148 37356195 -159839237 + A-rich Low_complexity Low_complexity 3 49 0 7 870 23 33 0 0 chr1 37356320 37356350 -159839082 + AT_rich Low_complexity Low_complexity 1 30 0 7 870 245 247 67 0 chr1 37356944 37357033 -159838399 + (CCGGG)n Simple_repeat Simple_repeat 1 95 0 7 870 213 289 11 117 chr1 37357850 37357944 -159837488 + MIRb SINE MIR 6 89 -179 7 870 957 116 7 0 chr1 37359271 37359409 -159836023 - B1_Mus1 SINE Alu -9 139 1 7 870 22 0 0 0 chr1 37359485 37359507 -159835925 + AT_rich Low_complexity Low_complexity 1 22 0 7 870 2240 161 57 62 chr1 37359507 37359995 -159835437 - RMER1C Other Other 0 1342 857 7 870 513 201 22 22 chr1 37360033 37360170 -159835262 + Lx2B LINE L1 6864 7000 0 7 870 471 291 201 18 chr1 37360167 37361081 -159834351 - L1MC4 LINE L1 -220 7822 6707 7 870 331 280 10 19 chr1 37361238 37361334 -159834098 + RSINE1 SINE B4 2 98 -194 7 870 198 0 0 0 chr1 37361806 37361828 -159833604 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 870 419 231 56 0 chr1 37363293 37363401 -159832031 + MER5A DNA MER1_type 18 131 -58 7 870 420 20 0 0 chr1 37365534 37365583 -159829849 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 870 446 0 19 0 chr1 37365583 37365636 -159829796 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 870 295 209 215 19 chr1 37366096 37366203 -159829229 - L1MA6 LINE L1 -69 6231 6104 7 870 816 215 60 5 chr1 37366325 37366526 -159828906 - B3 SINE B2 0 216 5 7 870 342 45 0 0 chr1 37366776 37366820 -159828612 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 870 795 164 75 0 chr1 37366892 37367038 -159828394 - L1MA6 LINE L1 -805 5492 5336 7 870 1009 257 102 4 chr1 37367060 37367326 -159828106 - B4A SINE B4 0 292 1 7 870 648 261 81 42 chr1 37367540 37367930 -159827502 - L1MA6 LINE L1 -1150 4990 4591 7 870 202 286 18 0 chr1 37372232 37372288 -159823144 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 870 559 172 129 16 chr1 37372572 37372696 -159822736 + B1_Mur1 SINE Alu 12 149 0 7 870 423 279 154 0 chr1 37373051 37373187 -159822245 + B4 SINE B4 119 275 -17 7 870 379 297 53 38 chr1 37375641 37375774 -159819658 - MLT1D LTR MaLR -33 472 338 7 870 213 39 0 0 chr1 37375815 37375841 -159819591 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 870 324 180 124 0 chr1 37375904 37375992 -159819440 - MER58C DNA MER1_type -2 213 127 7 870 190 146 41 20 chr1 37376127 37376137 -159819295 + (CGTG)n Simple_repeat Simple_repeat 1 10 0 7 870 1032 156 0 0 chr1 37376137 37376317 -159819115 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 870 190 146 41 20 chr1 37376317 37376355 -159819077 + (CGTG)n Simple_repeat Simple_repeat 1 40 0 7 870 595 201 173 0 chr1 37376361 37376500 -159818932 - RSINE1 SINE B4 0 165 3 7 870 335 286 56 21 chr1 37376603 37376746 -159818686 + L2a LINE L2 3027 3174 -252 7 870 712 162 43 0 chr1 37376769 37376886 -159818546 + B1_Mur1 SINE Alu 23 144 -5 7 870 903 223 19 33 chr1 37376891 37377104 -159818328 + B3 SINE B2 1 210 -6 7 870 940 117 7 0 chr1 37377140 37377277 -159818155 + B1_Mus1 SINE Alu 6 143 -5 7 870 234 0 0 0 chr1 37377279 37377305 -159818127 + (CAAAC)n Simple_repeat Simple_repeat 5 30 0 7 870 338 235 47 34 chr1 37377641 37377753 -159817679 - B1_Mur4 SINE Alu -6 144 28 7 870 267 146 0 0 chr1 37378408 37378463 -159816969 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 870 292 310 52 7 chr1 37379761 37379915 -159815517 - MIRc SINE MIR -89 179 9 7 870 29 47 0 0 chr1 37380037 37380080 -159815352 + AT_rich Low_complexity Low_complexity 1 43 0 7 870 595 318 79 36 chr1 37380498 37380832 -159814600 - MTD LTR MaLR -1 378 19 7 870 298 333 0 0 chr1 37380854 37380929 -159814503 - ID4_ SINE ID -2 81 7 7 870 930 259 24 0 chr1 37380972 37381177 -159814255 - B3 SINE B2 -6 210 1 7 870 401 214 24 12 chr1 37381186 37381271 -159814161 - PB1D10 SINE Alu -8 109 24 7 870 21 57 0 0 chr1 37382318 37382353 -159813079 + AT_rich Low_complexity Low_complexity 1 35 0 7 870 226 170 0 19 chr1 37382377 37382431 -159813001 + A-rich Low_complexity Low_complexity 2 54 0 7 870 430 294 24 8 chr1 37382471 37382583 -159812849 + RSINE1 SINE B4 37 151 -14 7 870 306 106 0 0 chr1 37382583 37382630 -159812802 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 870 430 294 24 8 chr1 37382630 37382644 -159812788 + RSINE1 SINE B4 152 165 0 7 870 2184 133 45 13 chr1 37383486 37383860 -159811572 - ORR1B1 LTR MaLR -8 386 1 7 870 201 74 0 0 chr1 37383868 37383895 -159811537 + (T)n Simple_repeat Simple_repeat 1 27 0 7 870 300 0 0 0 chr1 37383930 37383974 -159811458 - L1Md_T LINE L1 0 6582 6539 7 870 1148 82 0 7 chr1 37384773 37384921 -159810511 - B1_Mus1 SINE Alu 0 148 2 8 870 1115 183 45 20 chr1 37385246 37385447 -159809985 + B3 SINE B2 1 206 -10 8 870 330 26 0 0 chr1 37386114 37386153 -159809279 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 870 328 268 128 40 chr1 37386153 37386301 -159809131 - B3 SINE B2 -55 161 1 8 870 615 273 8 17 chr1 37387075 37387216 -159808216 + B3A SINE B2 21 157 -41 8 870 519 60 0 0 chr1 37387216 37387283 -159808149 + (TC)n Simple_repeat Simple_repeat 1 67 0 8 870 180 0 0 0 chr1 37387283 37387302 -159808130 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 870 277 298 70 117 chr1 37387302 37387330 -159808102 + B2_Mm1t SINE B2 155 182 -11 8 870 302 291 266 25 chr1 37387429 37387680 -159807752 - L1MC3 LINE L1 -168 7617 7289 8 870 866 188 133 0 chr1 37387680 37387861 -159807571 + B3 SINE B2 3 207 -9 8 870 302 291 266 25 chr1 37387861 37387936 -159807496 - L1MC3 LINE L1 -497 7288 7213 8 870 341 241 44 9 chr1 37388112 37388225 -159807207 - L1MC3 LINE L1 -802 6983 6867 8 870 479 149 0 39 chr1 37388225 37388302 -159807130 - B1_Mur4 SINE Alu -76 74 1 8 870 253 310 40 0 chr1 37388308 37388408 -159807024 - L1MC3 LINE L1 -924 6861 6758 8 870 1160 302 149 29 chr1 37389472 37390259 -159805173 - Lx8 LINE L1 -3 7470 6590 8 870 1022 258 125 67 chr1 37392076 37392499 -159802933 + MTD LTR MaLR 1 417 -2 8 870 447 19 0 0 chr1 37392519 37392571 -159802861 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 870 775 244 23 11 chr1 37392579 37392753 -159802679 - B3 SINE B2 -39 177 2 8 870 590 217 30 23 chr1 37392753 37392884 -159802548 - B4A SINE B4 -62 230 99 8 870 415 276 52 31 chr1 37394096 37394287 -159801145 + L1M4b LINE L1 77 271 -7063 8 870 439 390 69 28 chr1 37394301 37394591 -159800841 + L1M4b LINE L1 450 751 -6583 8 870 356 339 64 69 chr1 37394643 37394846 -159800586 + L1M4b LINE L1 1146 1347 -5987 8 870 249 252 207 36 chr1 37394899 37395121 -159800311 + L1M4b LINE L1 1457 1716 -5618 8 870 249 246 14 0 chr1 37395658 37395727 -159799705 + L1M4b LINE L1 1979 2048 -5286 8 870 359 325 27 59 chr1 37396048 37396267 -159799165 + L1M4b LINE L1 2583 2794 -4540 8 870 2698 131 63 91 chr1 37396313 37396343 -159799089 - RLTR28 LTR ERVL 0 524 496 8 870 3412 43 2 0 chr1 37396343 37396738 -159798694 - MTA_Mm LTR MaLR 0 396 1 8 870 2698 131 63 91 chr1 37396738 37397246 -159798186 - RLTR28 LTR ERVL -29 495 1 8 870 1104 73 7 0 chr1 37397559 37397695 -159797737 + B1_Mus2 SINE Alu 1 137 -10 8 870 944 244 30 0 chr1 37397730 37397931 -159797501 - B3 SINE B2 -9 207 1 8 870 353 264 179 0 chr1 37398436 37398576 -159796856 + MLT1B LTR MaLR 7 171 -219 8 870 236 269 60 0 chr1 37398663 37398730 -159796702 + MLT1B LTR MaLR 317 387 -3 8 870 302 226 155 0 chr1 37399928 37400012 -159795420 + MTEa LTR MaLR 16 112 -267 8 870 578 283 51 46 chr1 37400166 37400209 -159795223 - B3 SINE B2 -19 197 155 8 870 225 0 0 0 chr1 37400209 37400234 -159795198 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 870 578 283 51 46 chr1 37400234 37400386 -159795046 - B3 SINE B2 -62 154 1 8 870 767 149 97 0 chr1 37400612 37400746 -159794686 + B1_Mus1 SINE Alu 2 148 0 8 870 440 257 11 8 chr1 37400782 37400897 -159794535 + PB1D9 SINE Alu 1 117 0 8 870 357 175 118 15 chr1 37400899 37401085 -159794347 + Lx9 LINE L1 7400 7636 -8 8 870 899 164 29 0 chr1 37402015 37402155 -159793277 + B3A SINE B2 1 144 -54 8 870 357 24 0 0 chr1 37402156 37402198 -159793234 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 8 870 435 19 0 0 chr1 37402198 37402250 -159793182 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 870 1133 232 137 30 chr1 37403748 37404077 -159791355 - MTEb LTR MaLR -5 374 11 8 870 576 218 56 81 chr1 37404689 37404849 -159790583 + RSINE1 SINE B4 2 157 -8 8 870 775 263 29 43 chr1 37404889 37405096 -159790336 + B3 SINE B2 3 206 -10 8 870 1639 204 97 14 chr1 37405151 37405513 -159789919 - MTD LTR MaLR 0 419 28 8 870 504 265 101 50 chr1 37406791 37406990 -159788442 - Tigger7 DNA MER2_type -1 2490 2282 8 870 396 299 71 0 chr1 37406995 37407122 -159788310 - Tigger7 DNA MER2_type -2170 321 186 8 870 213 268 54 0 chr1 37408403 37408459 -159786973 - ID4 SINE ID -23 60 2 8 870 481 205 14 233 chr1 37408459 37408605 -159786827 - B1F SINE Alu -1 148 6 8 870 186 284 61 12 chr1 37408879 37408961 -159786471 - L2 LINE L2 -852 2567 2482 8 870 308 297 227 27 chr1 37409114 37409339 -159786093 - MLT1A1 LTR MaLR -53 312 43 8 870 315 298 0 0 chr1 37409514 37409638 -159785794 + (TG)n Simple_repeat Simple_repeat 1 124 0 8 870 186 103 0 0 chr1 37409734 37409763 -159785669 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 8 870 183 80 0 0 chr1 37410037 37410062 -159785370 + (G)n Simple_repeat Simple_repeat 1 25 0 8 870 267 309 71 8 chr1 37410114 37410241 -159785191 + RMER15 LTR ERVL 347 481 -94 8 870 333 338 91 9 chr1 37412068 37412298 -159783134 - L1ME3A LINE L1 -42 6131 5883 8 870 506 301 46 80 chr1 37413084 37413432 -159782000 - MTE2b LTR MaLR 0 419 82 8 870 243 23 68 0 chr1 37415140 37415184 -159780248 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 8 870 233 284 22 22 chr1 37415536 37415626 -159779806 - L1ME3A LINE L1 -410 5754 5665 8 870 438 309 110 18 chr1 37416582 37417032 -159778400 - L1M4b LINE L1 -5062 1842 1338 8 870 432 0 0 0 chr1 37417144 37417192 -159778240 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 870 339 25 0 0 chr1 37417192 37417231 -159778201 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 870 527 322 7 7 chr1 37417241 37417391 -159778041 - B3A SINE B2 -48 150 1 8 870 309 282 47 0 chr1 37417392 37417477 -159777955 - HAL1 LINE L1 -1054 1453 1365 8 870 276 152 86 25 chr1 37417484 37417565 -159777867 + L1M4b LINE L1 2020 2105 -5229 8 870 458 151 0 50 chr1 37417614 37417733 -159777699 + GA-rich Low_complexity Low_complexity 1 113 0 8 870 227 326 116 6 chr1 37417809 37417982 -159777450 + L1MD LINE L1 5648 5839 -403 8 870 4352 124 8 14 chr1 37417999 37418720 -159776712 + L1_Mur1 LINE L1 4866 5582 -304 8 870 370 265 66 114 chr1 37418739 37418905 -159776527 + L1M4 LINE L1 485 642 -5900 8 870 736 217 28 0 chr1 37419131 37419274 -159776158 + B1_Mur1 SINE Alu 2 148 -1 8 870 495 0 0 0 chr1 37419454 37419509 -159775923 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 870 250 256 192 6 chr1 37419517 37419678 -159775754 + L1M4 LINE L1 1917 2107 -4633 8 870 1212 254 103 6 chr1 37419916 37420237 -159775195 - ORR1D2 LTR MaLR -1 369 18 8 870 325 339 30 8 chr1 37420498 37420629 -159774803 - L1MB3 LINE L1 -17 6166 6033 8 870 251 114 23 0 chr1 37420686 37420730 -159774702 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 8 870 1186 37 0 0 chr1 37427023 37427158 -159768274 - B1_Mus1 SINE Alu -13 135 1 8 870 195 129 0 0 chr1 37427172 37427203 -159768229 + (T)n Simple_repeat Simple_repeat 1 31 0 8 870 839 203 42 31 chr1 37427288 37427481 -159767951 - B2_Mm2 SINE B2 0 195 1 8 870 401 246 78 28 chr1 37431572 37431714 -159763718 - B1F SINE Alu 0 149 1 8 870 22 0 0 0 chr1 37434957 37434979 -159760453 + AT_rich Low_complexity Low_complexity 1 22 0 8 870 215 286 0 0 chr1 37438130 37438179 -159757253 + ID4 SINE ID 2 50 -33 8 870 1639 200 68 12 chr1 37438346 37438685 -159756747 - MTD LTR MaLR 0 419 62 8 870 308 269 112 28 chr1 37438783 37438890 -159756542 + Charlie4z DNA MER1_type 52 167 0 8 870 384 235 163 45 chr1 37441548 37441685 -159753747 + B4A SINE B4 1 149 -75 8 870 230 122 0 39 chr1 37442612 37442663 -159752769 + T-rich Low_complexity Low_complexity 2 50 0 8 870 1197 68 0 0 chr1 37442670 37442816 -159752616 - B1_Mus2 SINE Alu 0 147 2 8 870 475 274 26 26 chr1 37443059 37443175 -159752257 - PB1D10 SINE Alu 0 117 2 8 870 202 272 133 74 chr1 37443340 37443475 -159751957 - MIRc SINE MIR -115 153 11 8 870 687 59 0 98 chr1 37444828 37444940 -159750492 - B1_Mus1 SINE Alu -8 140 40 8 870 1052 220 237 9 chr1 37448133 37448450 -159746982 - RMER16 LTR ERVK 0 533 145 8 870 241 179 110 94 chr1 37448927 37449011 -159746421 - MTEb LTR MaLR 0 379 295 8 870 488 188 79 55 chr1 37448981 37449110 -159746322 + RMER17B LTR ERVK 320 431 -527 8 870 573 55 0 0 chr1 37449110 37449183 -159746249 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 870 488 173 78 63 chr1 37449183 37449215 -159746217 + RMER17B LTR ERVK 432 463 -495 8 870 237 323 91 37 chr1 37449207 37449448 -159745984 - MTEb LTR MaLR -34 340 87 8 870 189 250 32 32 chr1 37449460 37449522 -159745910 - L2b LINE L2 -60 3315 3254 8 870 1705 176 34 28 chr1 37451112 37451434 -159743998 - MTC LTR MaLR 0 421 98 8 870 234 357 47 47 chr1 37456885 37457035 -159738397 - LTR89 LTR ERVL? -44 835 686 8 870 204 97 0 0 chr1 37457191 37457222 -159738210 + (T)n Simple_repeat Simple_repeat 1 31 0 8 870 276 330 646 0 chr1 37457326 37457470 -159737962 - MTE-int LTR MaLR -1263 317 81 8 870 506 294 34 20 chr1 37457928 37458077 -159737355 + RSINE1 SINE B4 3 153 -12 8 870 270 0 0 0 chr1 37458966 37458996 -159736436 + (CACG)n Simple_repeat Simple_repeat 4 33 0 8 870 228 357 78 14 chr1 37459027 37459169 -159736263 - MER63A DNA AcHobo -57 153 3 8 870 251 253 93 0 chr1 37459510 37459585 -159735847 - ID4_ SINE ID -1 82 1 8 870 217 105 53 0 chr1 37460026 37460064 -159735368 + CT-rich Low_complexity Low_complexity 3 42 0 8 870 199 135 18 55 chr1 37460216 37460271 -159735161 + T-rich Low_complexity Low_complexity 5 57 0 8 870 320 269 123 43 chr1 37466351 37466514 -159728918 - L1MD LINE L1 -2931 3215 3040 8 870 182 333 68 59 chr1 37467544 37467662 -159727770 - L3 LINE CR1 -2 4487 4369 8 870 324 184 31 0 chr1 37467989 37468087 -159727345 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 870 431 297 37 92 chr1 37468087 37468250 -159727182 - RSINE1 SINE B4 0 165 12 8 870 342 0 0 0 chr1 37468843 37468881 -159726551 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 8 870 207 0 0 0 chr1 37468917 37468940 -159726492 + (T)n Simple_repeat Simple_repeat 1 23 0 8 870 1243 48 0 0 chr1 37468940 37469087 -159726345 - B1_Mus1 SINE Alu 0 148 2 8 870 363 294 31 105 chr1 37469401 37469452 -159725980 - ERVL-B4-int LTR ERVL -4470 1244 1203 8 870 4987 126 130 8 chr1 37469452 37470071 -159725361 + RMER17B LTR ERVK 1 661 -297 8 870 306 0 0 0 chr1 37470071 37470105 -159725327 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 870 4987 126 130 8 chr1 37470105 37470339 -159725093 + RMER17B LTR ERVK 662 958 0 8 870 363 294 31 105 chr1 37470339 37470515 -159724917 - ERVL-B4-int LTR ERVL -4512 1202 1034 8 870 330 143 0 0 chr1 37470555 37470618 -159724814 + (T)n Simple_repeat Simple_repeat 1 63 0 9 870 1198 56 0 0 chr1 37470618 37470761 -159724671 - B1_Mus2 SINE Alu 0 147 5 9 870 1263 86 69 0 chr1 37470772 37470947 -159724485 - B2_Mm2 SINE B2 -8 187 1 9 870 282 213 146 23 chr1 37470951 37471081 -159724351 - ERVL-B4-int LTR ERVL -4678 1036 891 8 870 441 0 0 0 chr1 37471436 37471485 -159723947 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 870 1217 55 14 0 chr1 37472053 37472199 -159723233 - B1_Mus1 SINE Alu 0 148 1 9 870 515 280 72 0 chr1 37472379 37472504 -159722928 + RSINE1 SINE B4 2 135 -30 9 870 2398 127 89 10 chr1 37472744 37473127 -159722305 - MTC LTR MaLR -8 413 1 9 870 351 282 98 8 chr1 37473297 37473429 -159722003 + RSINE1 SINE B4 3 146 -19 9 870 397 271 180 88 chr1 37473451 37473539 -159721893 + L1MB2 LINE L1 4350 4439 -1701 9 870 1168 62 14 0 chr1 37473539 37473684 -159721748 + B1_Mus1 SINE Alu 2 148 0 9 870 397 273 178 84 chr1 37473684 37474289 -159721143 + L1MB2 LINE L1 4440 5118 -1028 9 870 687 281 136 26 chr1 37474463 37474793 -159720639 + L1MB2 LINE L1 5523 5882 -289 9 870 312 125 0 0 chr1 37474793 37474857 -159720575 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 870 687 281 136 26 chr1 37474857 37474954 -159720478 + L1MB2 LINE L1 5883 5996 -175 9 870 345 305 46 0 chr1 37475537 37475711 -159719721 + L1MB7 LINE L1 5296 5477 -701 9 870 261 308 98 11 chr1 37476059 37476233 -159719199 + L1MB7 LINE L1 5983 6171 -13 9 870 342 298 1 0 chr1 37477630 37477714 -159717718 - ID4_ SINE ID -59 93 9 9 870 431 304 57 14 chr1 37477727 37477867 -159717565 - B1F1 SINE Alu -3 146 1 9 870 4732 177 80 77 chr1 37478191 37480084 -159715348 + L1_Mur3 LINE L1 571 2479 -3401 9 870 6387 76 70 22 chr1 37480084 37480190 -159715242 + RLTR13C1 LTR ERVK 1 105 -878 9 870 3423 40 2 2 chr1 37480190 37480586 -159714846 + MTA_Mm LTR MaLR 1 396 0 9 870 6387 76 70 22 chr1 37480586 37481417 -159714015 + RLTR13C1 LTR ERVK 106 983 0 9 870 3955 152 195 109 chr1 37481420 37482807 -159712625 + L1_Mur3 LINE L1 2477 3983 -1897 9 870 3657 195 47 7 chr1 37482811 37483549 -159711883 + Lx6 LINE L1 6070 6837 -623 9 870 1719 201 101 14 chr1 37483560 37483918 -159711514 + Lx6 LINE L1 7051 7439 -21 9 870 22 0 0 0 chr1 37483952 37483974 -159711458 + AT_rich Low_complexity Low_complexity 1 22 0 9 870 253 268 0 0 chr1 37484011 37484067 -159711365 + ID_B1 SINE B4 116 171 -53 9 870 743 247 14 0 chr1 37484069 37484215 -159711217 + B1_Mur1 SINE Alu 2 149 0 9 870 319 278 11 0 chr1 37484215 37484305 -159711127 + GA-rich Low_complexity Low_complexity 3 93 0 9 870 804 225 52 21 chr1 37485472 37485663 -159709769 - B3 SINE B2 -19 197 1 9 870 417 287 125 13 chr1 37485799 37485873 -159709559 + B4A SINE B4 1 91 -201 9 870 264 240 140 40 chr1 37485873 37485973 -159709459 + PB1D9 SINE Alu 1 110 -10 9 870 230 169 102 0 chr1 37485986 37486045 -159709387 + B2_Mm2 SINE B2 1 65 -130 9 108 232 224 78 56 chr1 37486528 37486618 -159708814 - MIRb SINE MIR -84 184 93 9 871 285 327 59 29 chr1 37487260 37487430 -159708002 - MER53 DNA hAT 0 193 19 9 871 288 291 27 18 chr1 37487321 37487433 -159707999 + MER53 DNA hAT 75 187 -6 9 871 30 0 0 0 chr1 37487459 37487489 -159707943 + GC_rich Low_complexity Low_complexity 1 30 0 9 871 369 266 18 0 chr1 37488692 37488801 -159706631 - PB1D10 SINE Alu -6 111 1 9 871 376 194 83 9 chr1 37492286 37492395 -159703037 - L1MA5 LINE L1 -34 6266 6150 9 871 242 286 0 60 chr1 37492739 37492806 -159702626 - ID_B1 SINE B4 -9 215 153 9 871 274 275 33 32 chr1 37492806 37492839 -159702593 - B1F SINE Alu -9 140 14 9 871 243 217 325 0 chr1 37492871 37492954 -159702478 + RSINE1 SINE B4 16 125 -40 9 871 21 0 0 0 chr1 37492974 37492995 -159702437 + AT_rich Low_complexity Low_complexity 1 21 0 9 871 225 241 33 49 chr1 37494163 37494224 -159701208 - MER54A LTR ERVL -87 814 755 9 871 580 250 172 6 chr1 37497451 37497620 -159697812 - RMER30 DNA MER1_type -1 201 5 9 871 294 218 264 0 chr1 37497907 37497994 -159697438 + PB1D10 SINE Alu 1 110 -7 9 871 440 286 192 40 chr1 37498043 37498386 -159697046 - MLT1E3 LTR MaLR -10 643 270 9 871 320 352 19 0 chr1 37498997 37499105 -159696327 + MER3 DNA MER1_type 9 118 -91 9 871 363 105 0 0 chr1 37501047 37501104 -159694328 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 871 260 224 131 71 chr1 37502274 37502442 -159692990 + L1M3 LINE L1 5258 5435 -745 2 871 1026 215 5 14 chr1 37502448 37502660 -159692772 + B3 SINE B2 2 211 -5 3 871 262 266 0 0 chr1 37503363 37503405 -159692027 + A-rich Low_complexity Low_complexity 1 42 0 4 871 1181 61 0 13 chr1 37503405 37503555 -159691877 + B1_Mus1 SINE Alu 1 148 0 5 871 262 266 0 0 chr1 37503555 37503591 -159691841 + A-rich Low_complexity Low_complexity 43 78 0 6 871 534 16 0 0 chr1 37503591 37503654 -159691778 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 7 871 574 280 33 7 chr1 37504116 37504267 -159691165 - RSINE1 SINE B4 0 165 11 8 871 610 270 146 90 chr1 37506501 37506823 -159688609 + MTE2a LTR MaLR 25 364 -55 9 871 312 0 62 0 chr1 37506825 37506873 -159688559 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 871 369 0 0 0 chr1 37506874 37506915 -159688517 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 871 1186 64 0 0 chr1 37506915 37507071 -159688361 - B2_Mm2 SINE B2 -38 157 2 1 871 315 200 0 0 chr1 37507073 37507133 -159688299 + MTE2a LTR MaLR 296 355 -4 9 871 284 268 0 0 chr1 37507617 37507688 -159687744 + BC1_Mm scRNA scRNA 2 72 -80 1 871 236 242 0 46 chr1 37507637 37507702 -159687730 + ID SINE ID 23 84 -140 1 871 709 186 54 54 chr1 37507714 37507862 -159687570 + B1_Mur1 SINE Alu 1 148 -1 1 871 382 277 86 20 chr1 37507863 37508014 -159687418 + L1MD LINE L1 3776 3936 -2210 1 871 403 251 11 47 chr1 37508028 37508233 -159687199 + B4 SINE B4 11 284 -8 1 871 397 328 28 28 chr1 37508727 37508868 -159686564 + RSINE1 SINE B4 4 144 -21 1 871 654 162 0 84 chr1 37509821 37509976 -159685456 + B1_Mur3 SINE Alu 6 147 -2 1 871 185 65 0 31 chr1 37509977 37510009 -159685423 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 2 871 260 49 49 0 chr1 37510120 37510161 -159685271 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 2 871 530 67 13 0 chr1 37510162 37510237 -159685195 + (GGA)n Simple_repeat Simple_repeat 1 76 0 2 871 2633 25 25 3 chr1 37510372 37510696 -159684736 - L1Md_F3 LINE L1 0 6584 6254 2 871 5799 23 16 0 chr1 37510696 37511402 -159684030 + L1Md_F3 LINE L1 5542 6258 -326 2 871 510 207 0 35 chr1 37511438 37511553 -159683879 + PB1D10 SINE Alu 2 112 -5 2 871 248 293 35 0 chr1 37512018 37512076 -159683356 + ID4 SINE ID 2 61 -22 2 871 222 174 0 0 chr1 37512087 37512133 -159683299 + G-rich Low_complexity Low_complexity 4 49 0 2 871 198 0 0 0 chr1 37512193 37512215 -159683217 + (GGA)n Simple_repeat Simple_repeat 3 24 0 2 871 1814 162 202 10 chr1 37512843 37513230 -159682202 + RMER6B LTR ERVK 1 461 0 2 871 238 109 36 18 chr1 37513867 37513923 -159681509 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 2 871 336 191 0 0 chr1 37513924 37514018 -159681414 + CT-rich Low_complexity Low_complexity 1 94 0 3 871 317 197 0 0 chr1 37514031 37514097 -159681335 - ID4 SINE ID -13 70 5 3 871 359 284 52 15 chr1 37514113 37514249 -159681183 - B3 SINE B2 -2 214 74 3 871 760 70 130 0 chr1 37514759 37514874 -159680558 + B1_Mm SINE Alu 9 138 -9 3 871 900 83 0 0 chr1 37516666 37516786 -159678646 + Lx2 LINE L1 6569 6688 -309 3 871 1404 76 11 0 chr1 37516994 37517178 -159678254 + B2_Mm1t SINE B2 1 186 -7 3 871 271 249 101 51 chr1 37517407 37517585 -159677847 + L1M3 LINE L1 3255 3441 -2699 3 871 1049 61 0 13 chr1 37517618 37517767 -159677665 + B2_Mm2 SINE B2 1 147 -48 3 871 748 261 103 0 chr1 37517820 37518004 -159677428 + ID_B1 SINE B4 8 210 -14 3 871 269 235 99 0 chr1 37518058 37518139 -159677293 + L1M3 LINE L1 3510 3598 -2542 3 871 474 18 0 0 chr1 37518308 37518363 -159677069 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 871 340 232 121 0 chr1 37518382 37518481 -159676951 - B1F SINE Alu -11 138 28 4 871 870 86 0 97 chr1 37518617 37518771 -159676661 + B1_Mus2 SINE Alu 9 147 0 4 871 1144 79 0 0 chr1 37518775 37518915 -159676517 + B1_Mus1 SINE Alu 1 140 -8 4 871 213 65 0 0 chr1 37518915 37518946 -159676486 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 871 201 74 0 0 chr1 37519022 37519049 -159676383 + (A)n Simple_repeat Simple_repeat 1 27 0 4 871 635 261 6 54 chr1 37519237 37519403 -159676029 + B4A SINE B4 135 292 0 4 871 25 51 0 0 chr1 37519630 37519669 -159675763 + AT_rich Low_complexity Low_complexity 1 39 0 4 871 231 88 0 0 chr1 37520765 37520799 -159674633 + (A)n Simple_repeat Simple_repeat 1 34 0 4 871 264 238 63 0 chr1 37520941 37521004 -159674428 - ID SINE ID -146 78 12 4 871 482 295 45 32 chr1 37521637 37521791 -159673641 + RSINE1 SINE B4 3 158 -7 4 871 527 291 75 5 chr1 37521890 37522090 -159673342 + MER20 DNA MER1_type 5 218 -1 5 871 948 85 169 12 chr1 37522504 37522670 -159672762 - B2_Mm1t SINE B2 0 193 2 5 871 295 250 0 0 chr1 37522790 37522858 -159672574 - B3A SINE B2 -130 68 1 5 871 188 67 0 32 chr1 37523523 37523554 -159671878 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 871 754 221 9 108 chr1 37523555 37523778 -159671654 - B3 SINE B2 -15 201 1 5 871 6069 40 1 16 chr1 37523987 37524728 -159670704 + L1Md_F2 LINE L1 5851 6580 -2 5 871 426 202 0 12 chr1 37525076 37525156 -159670276 + ID4 SINE ID 3 81 -2 5 871 2212 153 53 2 chr1 37525194 37525587 -159669845 - MTC LTR MaLR -8 413 1 5 871 327 291 144 24 chr1 37526562 37526766 -159668666 + B4A SINE B4 2 230 -62 5 871 811 126 8 28 chr1 37526766 37526916 -159668516 + B2_Mm2 SINE B2 2 159 -57 5 871 378 100 0 0 chr1 37526927 37526987 -159668445 + (CAT)n Simple_repeat Simple_repeat 2 61 0 6 871 285 186 17 0 chr1 37526988 37527047 -159668385 + B4A SINE B4 217 276 -16 6 871 477 224 41 0 chr1 37527048 37527146 -159668286 + B1_Mur1 SINE Alu 22 123 -26 6 871 216 0 0 0 chr1 37527150 37527174 -159668258 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 871 948 165 0 0 chr1 37527560 37527833 -159667599 + (CA)n Simple_repeat Simple_repeat 1 273 0 6 871 534 278 192 21 chr1 37528020 37528406 -159667026 + L1M3b LINE L1 325 776 -5537 6 871 326 287 118 10 chr1 37528960 37529062 -159666370 + PB1D10 SINE Alu 3 115 -2 6 871 422 293 82 10 chr1 37529128 37529335 -159666097 + L1M3b LINE L1 1437 1658 -4726 6 871 254 333 97 45 chr1 37529335 37529489 -159665943 + RSINE1 SINE B4 1 162 -3 6 871 921 213 20 5 chr1 37529610 37529808 -159665624 + B3 SINE B2 2 202 -14 6 871 1412 79 0 26 chr1 37529808 37530001 -159665431 - B2_Mm2 SINE B2 -6 189 1 6 871 412 266 148 15 chr1 37530354 37530509 -159664923 + L1M3b LINE L1 2271 2446 -3933 6 871 486 33 0 0 chr1 37530509 37530569 -159664863 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 871 423 0 0 0 chr1 37530569 37530615 -159664817 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 871 412 254 168 25 chr1 37530615 37530723 -159664709 + L1M3b LINE L1 2447 2575 -3804 6 871 446 167 73 0 chr1 37530786 37530882 -159664550 + B1F2 SINE Alu 42 144 -5 7 871 261 22 65 0 chr1 37531484 37531530 -159663902 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 871 26 0 0 0 chr1 37531700 37531726 -159663706 + AT_rich Low_complexity Low_complexity 1 26 0 7 871 220 270 122 11 chr1 37532195 37532207 -159663225 + B4 SINE B4 74 95 -197 7 871 463 202 83 0 chr1 37532207 37532316 -159663116 + PB1D9 SINE Alu 3 120 0 7 871 450 53 0 0 chr1 37532418 37532475 -159662957 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 871 291 71 0 0 chr1 37532568 37532610 -159662822 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 871 323 270 63 0 chr1 37532631 37532742 -159662690 + B3 SINE B2 95 212 -4 7 871 295 302 56 28 chr1 37532853 37532996 -159662436 + MER58B DNA MER1_type 187 333 -8 8 871 551 273 83 56 chr1 37534201 37534539 -159660893 + L1M4 LINE L1 2606 2952 -3194 8 871 777 173 48 36 chr1 37534561 37534729 -159660703 + B3 SINE B2 1 170 -46 8 871 225 287 39 62 chr1 37534792 37534922 -159660510 + L1MC LINE L1 2971 3097 -3049 8 871 304 307 129 52 chr1 37536008 37536389 -159659043 + L1M4 LINE L1 4637 5046 -1100 8 871 480 236 20 20 chr1 37536390 37536541 -159658891 - MTD LTR MaLR -262 157 7 8 871 2809 73 78 0 chr1 37537143 37537514 -159657918 - MTB LTR MaLR 0 400 1 8 871 596 176 126 16 chr1 37537818 37537945 -159657487 + B1_Mur1 SINE Alu 1 141 -8 8 871 2190 96 9 64 chr1 37538394 37538739 -159656693 + ORR1A3 LTR MaLR 1 326 0 8 871 1638 26 5 10 chr1 37539132 37539326 -159656106 + B2_Mm1t SINE B2 1 193 0 8 871 874 222 36 5 chr1 37539504 37539699 -159655733 + B3 SINE B2 6 206 -10 8 871 2446 210 59 21 chr1 37539720 37540327 -159655105 + Lx9 LINE L1 6966 7595 -49 9 871 21 0 0 0 chr1 37540339 37540360 -159655072 + AT_rich Low_complexity Low_complexity 1 21 0 9 871 373 277 5 5 chr1 37540487 37540593 -159654839 - B1F SINE Alu -9 108 3 9 871 228 310 11 44 chr1 37540512 37540603 -159654829 - B4A SINE B4 -124 168 81 9 871 1924 178 36 3 chr1 37540957 37541317 -159654115 - ORR1C2 LTR MaLR 0 384 13 9 871 1576 27 0 26 chr1 37541353 37541546 -159653886 - B2_Mm1a SINE B2 -5 188 1 9 871 945 103 7 46 chr1 37543003 37543156 -159652276 + B1_Mus2 SINE Alu 1 147 0 9 871 834 232 228 13 chr1 37543167 37543487 -159651945 - MTD LTR MaLR -30 389 1 9 871 312 137 0 0 chr1 37545826 37545877 -159649555 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 871 1117 105 168 5 chr1 37546824 37547015 -159648417 - URR1A DNA MER1_type -4 222 1 9 871 269 323 121 7 chr1 37547531 37547828 -159647604 + L1MC4 LINE L1 7459 7800 -82 1 871 589 320 113 70 chr1 37547867 37548264 -159647168 + Tigger9b DNA MER2_type 8 421 -203 1 871 459 158 99 0 chr1 37548493 37548591 -159646841 + B1_Mus2 SINE Alu 1 109 -11 1 871 551 209 129 0 chr1 37548943 37549082 -159646350 + B3A SINE B2 9 165 -33 1 871 307 285 76 15 chr1 37549399 37549531 -159645901 - B1F1 SINE Alu -9 140 1 1 871 1378 95 16 0 chr1 37550419 37550608 -159644824 + B2_Mm2 SINE B2 1 192 -3 1 871 1183 68 0 0 chr1 37550619 37550765 -159644667 + B1_Mus2 SINE Alu 2 147 0 1 871 249 33 0 0 chr1 37550765 37550795 -159644637 + (A)n Simple_repeat Simple_repeat 1 30 0 1 871 334 209 0 0 chr1 37550844 37550911 -159644521 - PB1D9 SINE Alu -12 108 42 1 871 259 242 0 0 chr1 37551426 37551488 -159643944 + ID4_ SINE ID 2 63 -20 1 871 224 300 12 0 chr1 37551488 37551506 -159643926 + ID SINE ID 2 82 -142 1 871 641 233 7 0 chr1 37551530 37551680 -159643752 + B3 SINE B2 2 152 -64 1 871 31 26 0 0 chr1 37552381 37552419 -159643013 + AT_rich Low_complexity Low_complexity 1 38 0 1 871 22 80 0 0 chr1 37552453 37552503 -159642929 + AT_rich Low_complexity Low_complexity 1 50 0 1 871 31 88 0 0 chr1 37552533 37552613 -159642819 + AT_rich Low_complexity Low_complexity 1 80 0 1 871 383 213 303 13 chr1 37553449 37553601 -159641831 + B3 SINE B2 2 197 -19 1 871 421 291 21 21 chr1 37554091 37554235 -159641197 + B1F1 SINE Alu 6 149 0 1 871 612 259 0 20 chr1 37554269 37554419 -159641013 + B1_Mur2 SINE Alu 2 148 -1 1 871 21 36 0 0 chr1 37554964 37554992 -159640440 + AT_rich Low_complexity Low_complexity 1 28 0 1 871 507 227 82 34 chr1 37555004 37555150 -159640282 - RSINE1 SINE B4 -11 154 2 1 871 244 273 52 0 chr1 37555754 37555831 -159639601 + Lx9 LINE L1 6970 7050 -594 1 871 519 314 48 58 chr1 37555847 37556141 -159639291 + Lx9 LINE L1 7131 7421 -223 1 871 1217 153 55 23 chr1 37556158 37556378 -159639054 + RLTR18B LTR ERVK 9 235 -277 1 871 329 256 23 47 chr1 37556387 37556473 -159638959 + RLTR18B LTR ERVK 189 272 -240 1 871 1357 241 27 43 chr1 37556474 37556706 -159638726 + RLTR18B LTR ERVK 159 338 -174 1 871 1822 126 109 0 chr1 37556706 37556999 -159638433 - ORR1A3 LTR MaLR -1 325 1 1 871 1357 239 28 48 chr1 37556999 37557170 -159638262 + RLTR18B LTR ERVK 339 507 -5 1 871 21 71 0 0 chr1 37557360 37557402 -159638030 + AT_rich Low_complexity Low_complexity 1 42 0 1 871 309 253 76 11 chr1 37558072 37558164 -159637268 + PB1 SINE Alu 29 126 -1 1 871 311 246 0 0 chr1 37558595 37558660 -159636772 + L1MC4 LINE L1 6768 6832 -1210 1 871 557 268 12 77 chr1 37558699 37558869 -159636563 + RSINE1 SINE B4 5 163 -2 1 871 1112 275 132 32 chr1 37558901 37559529 -159635903 + L1MC4 LINE L1 6935 7625 -417 1 871 268 24 0 0 chr1 37560354 37560395 -159635037 + L1Md_T LINE L1 6542 6582 0 1 871 222 37 0 0 chr1 37560511 37560538 -159634894 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 1 871 398 267 181 19 chr1 37560540 37560849 -159634583 - RMER10A LTR ERVL -25 417 59 1 871 23 0 0 0 chr1 37561015 37561038 -159634394 + AT_rich Low_complexity Low_complexity 1 23 0 1 871 364 216 20 0 chr1 37561161 37561263 -159634169 + GA-rich Low_complexity Low_complexity 1 104 0 1 871 181 383 17 9 chr1 37562045 37562161 -159633271 - MER5A DNA MER1_type -6 183 67 1 871 183 80 0 0 chr1 37562546 37562571 -159632861 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 1 871 1319 83 33 0 chr1 37562571 37562752 -159632680 - B2_Mm2 SINE B2 -1 194 8 1 871 738 84 0 0 chr1 37562869 37562976 -159632456 + (TC)n Simple_repeat Simple_repeat 1 107 0 1 871 387 169 277 0 chr1 37563288 37563371 -159632061 + B3 SINE B2 1 106 -110 1 871 2706 128 50 30 chr1 37563375 37564026 -159631406 + RMER6A LTR ERVK 44 756 0 1 871 363 171 13 13 chr1 37564026 37564103 -159631329 + RMER1B Other Other 976 1052 -14 1 871 615 292 101 112 chr1 37564174 37564721 -159630711 + MLT1E2 LTR MaLR 10 601 -26 1 871 665 178 9 0 chr1 37565051 37565158 -159630274 + B3A SINE B2 2 109 -89 1 871 230 264 13 40 chr1 37565326 37565401 -159630031 + B3 SINE B2 89 161 -55 1 871 241 167 0 20 chr1 37565404 37565453 -159629979 + G-rich Low_complexity Low_complexity 2 49 0 1 871 1455 181 92 54 chr1 37565960 37566386 -159629046 + RMER10A LTR ERVL 1 442 0 1 871 300 280 30 10 chr1 37566848 37566949 -159628483 + RMER15 LTR ERVL 379 481 -94 1 871 372 275 192 13 chr1 37567420 37567571 -159627861 - MER68 LTR ERVL -385 178 1 1 871 391 219 0 14 chr1 37567686 37567760 -159627672 + ID4_ SINE ID 11 83 0 1 871 648 219 16 16 chr1 37567921 37568046 -159627386 + RSINE1 SINE B4 12 136 -29 1 871 357 24 0 0 chr1 37568053 37568095 -159627337 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 871 312 250 219 124 chr1 37568136 37568401 -159627031 - B4A SINE B4 0 292 3 1 871 327 256 128 0 chr1 37568553 37568639 -159626793 + B1F SINE Alu 1 97 -52 1 871 330 284 76 106 chr1 37569590 37569826 -159625606 + L1M4b LINE L1 373 601 -6303 1 871 324 0 0 0 chr1 37570220 37570256 -159625176 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 871 1625 144 67 37 chr1 37570367 37570782 -159624650 - RMER17C LTR ERVK -519 439 16 1 871 412 219 171 0 chr1 37571056 37571161 -159624271 + RSINE1 SINE B4 3 125 -40 1 871 226 0 0 56 chr1 37571161 37571197 -159624235 + (CACAG)n Simple_repeat Simple_repeat 1 34 0 1 871 574 302 99 58 chr1 37571202 37571362 -159624070 + L1M4b LINE L1 1376 1539 -5795 1 871 813 128 88 0 chr1 37571362 37571487 -159623945 + B1_Mus1 SINE Alu 2 137 -11 1 871 207 0 0 0 chr1 37571488 37571511 -159623921 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 871 574 302 99 58 chr1 37571511 37571763 -159623669 + L1M4b LINE L1 1540 1807 -5527 1 871 1139 83 0 0 chr1 37571936 37572080 -159623352 + B1_Mus1 SINE Alu 1 144 -4 1 871 495 0 0 0 chr1 37572081 37572136 -159623296 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1 871 414 0 0 0 chr1 37572136 37572182 -159623250 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 871 339 130 0 0 chr1 37572494 37572548 -159622884 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 871 236 258 135 0 chr1 37572925 37573014 -159622418 + L1M4b LINE L1 4932 5032 -1974 1 871 238 325 0 91 chr1 37573042 37573130 -159622302 + ID2 SINE ID 2 81 -2 1 871 311 208 54 27 chr1 37573242 37573316 -159622116 + PB1D10 SINE Alu 5 80 -37 1 871 418 243 61 79 chr1 37573313 37573478 -159621954 + B3A SINE B2 42 203 -13 1 871 343 295 124 62 chr1 37573509 37573796 -159621636 + B4A SINE B4 1 280 -12 1 871 181 286 88 39 chr1 37574523 37574625 -159620807 + MIRm SINE MIR 166 272 -4 1 871 190 175 65 81 chr1 37574861 37574923 -159620509 - MIRm SINE MIR -92 184 124 1 871 485 279 129 58 chr1 37574989 37575229 -159620203 - MTE2b-int LTR MaLR -761 819 563 1 871 1325 256 35 47 chr1 37575247 37575652 -159619780 - MTE2b-int LTR MaLR -1179 401 2 1 871 1252 232 103 53 chr1 37575660 37576020 -159619412 - MTE2b LTR MaLR -1 378 1 1 871 317 191 66 54 chr1 37576334 37576345 -159619087 + (CTATA)n Simple_repeat Simple_repeat 3 11 0 1 871 2851 46 40 8 chr1 37576345 37576699 -159618733 + RLTR10B2 LTR ERVK 1 365 0 1 871 317 191 66 54 chr1 37576699 37576853 -159618579 + (CTATA)n Simple_repeat Simple_repeat 2 160 0 1 871 623 279 46 56 chr1 37577349 37577565 -159617867 + B3 SINE B2 3 216 0 1 871 540 174 0 0 chr1 37577653 37577774 -159617658 + (CA)n Simple_repeat Simple_repeat 2 122 0 1 871 303 197 66 0 chr1 37577775 37577836 -159617596 + HAL1-3A_ME LINE L1 1963 2027 -831 1 871 270 222 0 0 chr1 37577836 37577926 -159617506 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 871 310 299 94 0 chr1 37577927 37578054 -159617378 + HAL1-3A_ME LINE L1 1976 2114 -744 1 871 510 96 0 0 chr1 37578955 37579028 -159616404 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 871 659 259 56 19 chr1 37579043 37579259 -159616173 + ID_B1 SINE B4 1 224 0 1 871 27 0 0 0 chr1 37579453 37579480 -159615952 + AT_rich Low_complexity Low_complexity 1 27 0 1 871 333 333 8 58 chr1 37580145 37580266 -159615166 + B1F SINE Alu 1 115 -34 1 871 431 293 65 54 chr1 37580268 37580371 -159615061 + B3A SINE B2 2 103 -95 1 871 2257 199 27 142 chr1 37580371 37580848 -159614584 - RMER6A LTR ERVK -3 753 321 1 871 558 95 0 0 chr1 37580848 37580943 -159614489 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 871 2257 199 27 142 chr1 37580943 37581316 -159614116 - RMER6A LTR ERVK -436 320 1 1 871 431 293 65 54 chr1 37581316 37581396 -159614036 + B3A SINE B2 104 187 -11 1 871 33 0 0 0 chr1 37581410 37581443 -159613989 + AT_rich Low_complexity Low_complexity 1 33 0 1 871 563 226 75 0 chr1 37582555 37582701 -159612731 + RSINE1 SINE B4 2 158 -7 1 871 462 263 235 76 chr1 37583095 37583321 -159612111 + B4 SINE B4 2 269 -23 1 871 300 27 0 0 chr1 37583321 37583358 -159612074 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 871 207 0 0 0 chr1 37583358 37583380 -159612052 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 871 462 263 235 76 chr1 37583380 37583403 -159612029 + B4 SINE B4 270 291 -1 1 871 1195 74 0 0 chr1 37583506 37583654 -159611778 + B1_Mus1 SINE Alu 1 148 0 1 871 308 12 0 110 chr1 37583654 37583745 -159611687 + (GAA)n Simple_repeat Simple_repeat 1 81 0 1 871 472 262 97 21 chr1 37583756 37583790 -159611642 + B3 SINE B2 56 96 -120 1 871 315 0 0 0 chr1 37583790 37583825 -159611607 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 871 472 262 97 21 chr1 37583825 37583934 -159611498 + B3 SINE B2 97 210 -6 1 871 272 279 69 75 chr1 37584368 37584527 -159610905 + L1MB8 LINE L1 1314 1471 -5863 1 871 786 257 18 37 chr1 37584565 37584783 -159610649 + B3 SINE B2 1 214 -2 1 871 691 212 21 64 chr1 37584802 37584943 -159610489 + B1_Mur1 SINE Alu 7 141 -8 1 871 745 274 132 80 chr1 37585100 37585262 -159610170 + MLT2B1 LTR ERVL 13 173 -347 1 871 2016 137 42 32 chr1 37585262 37585668 -159609764 + RMER17C LTR ERVK 1 410 0 1 871 745 274 132 80 chr1 37585668 37585930 -159609502 + MLT2B1 LTR ERVL 174 459 -61 1 871 425 224 55 18 chr1 37586121 37586230 -159609202 - PB1D10 SINE Alu 0 117 5 1 871 325 249 47 50 chr1 37586468 37586599 -159608833 + L1MB8 LINE L1 1695 1924 -5085 1 871 21 36 0 0 chr1 37586697 37586725 -159608707 + AT_rich Low_complexity Low_complexity 1 28 0 1 871 399 21 0 0 chr1 37586817 37586865 -159608567 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 871 834 20 0 0 chr1 37586921 37587021 -159608411 + (CA)n Simple_repeat Simple_repeat 2 101 0 2 871 887 244 29 0 chr1 37587110 37587315 -159608117 + B3 SINE B2 2 212 -4 2 871 590 246 17 0 chr1 37587330 37587448 -159607984 + B3A SINE B2 38 157 -41 2 871 363 23 0 0 chr1 37587463 37587507 -159607925 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 871 342 243 236 51 chr1 37587522 37587895 -159607537 + L1MB8 LINE L1 2313 2754 -4580 1 871 252 209 189 9 chr1 37587949 37588060 -159607372 + L1MB8 LINE L1 2916 3046 -4288 1 871 467 314 18 42 chr1 37588060 37588226 -159607206 - RSINE1 SINE B4 0 165 4 2 871 411 316 132 37 chr1 37588230 37588526 -159606906 + L1MB8 LINE L1 3016 3339 -3995 1 871 386 266 190 0 chr1 37588571 37588755 -159606677 + L1MB8 LINE L1 6406 6624 -414 1 871 441 247 174 14 chr1 37588791 37588990 -159606442 + B4A SINE B4 3 233 -59 2 871 398 309 45 78 chr1 37588983 37589162 -159606270 + B3A SINE B2 6 178 -20 2 871 261 0 0 0 chr1 37589165 37589194 -159606238 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 871 234 128 0 0 chr1 37589283 37589322 -159606110 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 871 433 282 60 23 chr1 37589323 37589541 -159605891 + L1MB8 LINE L1 6664 6889 -149 1 871 28 0 0 0 chr1 37590032 37590060 -159605372 + AT_rich Low_complexity Low_complexity 1 28 0 2 871 482 283 13 27 chr1 37591692 37591841 -159603591 + RSINE1 SINE B4 5 151 -14 2 871 216 0 0 0 chr1 37593080 37593104 -159602328 + (A)n Simple_repeat Simple_repeat 1 24 0 2 871 234 0 0 0 chr1 37593425 37593451 -159601981 + (A)n Simple_repeat Simple_repeat 1 26 0 2 871 192 343 15 0 chr1 37594003 37594070 -159601362 + MIRb SINE MIR 199 266 -2 2 871 588 163 45 123 chr1 37594609 37594763 -159600669 - B1_Mur4 SINE Alu -7 143 2 2 871 1267 95 11 11 chr1 37595614 37595805 -159599627 + B2_Mm2 SINE B2 1 191 -4 2 871 951 155 0 13 chr1 37595815 37595965 -159599467 + B1_Mur4 SINE Alu 1 148 -2 2 871 441 0 0 0 chr1 37595968 37596017 -159599415 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 871 23 33 0 0 chr1 37597639 37597669 -159597763 + GC_rich Low_complexity Low_complexity 1 30 0 2 871 302 258 19 32 chr1 37597777 37597981 -159597451 + (CCG)n Simple_repeat Simple_repeat 1 201 0 2 871 225 249 148 43 chr1 37598590 37598727 -159596705 - MIR SINE MIR -56 212 73 2 871 502 344 40 58 chr1 37598798 37599076 -159596356 - LTR83 LTR ERVL -22 758 486 2 871 376 306 96 7 chr1 37599897 37600032 -159595400 - RSINE1 SINE B4 -5 160 14 2 871 437 214 123 51 chr1 37600457 37600595 -159594837 + B1F SINE Alu 2 149 0 2 871 1205 193 32 0 chr1 37600812 37601030 -159594402 - URR1B DNA MER1_type 0 225 1 2 871 191 36 36 0 chr1 37601098 37601126 -159594306 + (CCCCCG)n Simple_repeat Simple_repeat 3 31 0 2 871 231 248 220 33 chr1 37601145 37601295 -159594137 - L2b LINE L2 -82 3293 3116 2 871 1349 269 34 167 chr1 37601645 37602202 -159593230 + RCHARR1 DNA MER1_type 17 499 -475 2 871 224 254 18 0 chr1 37602270 37602325 -159593107 + B1_Mur3 SINE Alu 42 97 -52 2 871 2037 208 69 5 chr1 37602336 37602785 -159592647 + RCHARR1 DNA MER1_type 482 959 -15 2 871 1110 82 7 7 chr1 37602797 37602945 -159592487 - B1_Mus1 SINE Alu 0 148 1 2 871 508 241 35 28 chr1 37603029 37603174 -159592258 + B1F SINE Alu 1 146 -3 2 871 222 186 237 0 chr1 37603184 37603243 -159592189 + ID4_ SINE ID 2 74 -9 2 871 429 81 0 0 chr1 37603277 37603339 -159592093 + (GGGAGA)n Simple_repeat Simple_repeat 4 65 0 2 871 245 178 22 22 chr1 37603409 37603455 -159591977 - ID_B1 SINE B4 -101 123 78 2 871 259 318 71 26 chr1 37603710 37603823 -159591609 - LTR33A_ LTR ERVL -321 210 93 2 871 222 309 18 0 chr1 37606742 37606797 -159588635 - PB1 SINE Alu -71 56 1 2 871 357 67 0 16 chr1 37607321 37607382 -159588050 + L1Md_F2 LINE L1 6523 6582 0 2 871 517 300 71 54 chr1 37607526 37607786 -159587646 + B4A SINE B4 2 262 -30 2 871 234 0 0 0 chr1 37607811 37607837 -159587595 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 871 405 0 0 0 chr1 37607837 37607881 -159587551 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 871 554 126 129 43 chr1 37607903 37608019 -159587413 + B4 SINE B4 98 223 -69 2 871 611 208 8 16 chr1 37609655 37609777 -159585655 + ID_B1 SINE B4 95 215 -9 2 871 369 0 0 0 chr1 37609905 37609946 -159585486 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 871 871 46 0 30 chr1 37609946 37610081 -159585351 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 2 871 426 222 100 0 chr1 37610086 37610176 -159585256 - RSINE1 SINE B4 -48 117 19 2 871 972 151 15 171 chr1 37610178 37610282 -159585150 - URR1A DNA MER1_type 0 226 133 2 871 1413 63 5 45 chr1 37610282 37610482 -159584950 + B2_Mm1a SINE B2 2 193 0 2 871 972 151 15 171 chr1 37610482 37610496 -159584936 - URR1A DNA MER1_type -94 132 132 2 871 1475 60 11 0 chr1 37610496 37610681 -159584751 + B2_Mm1t SINE B2 2 188 -5 2 871 972 151 15 171 chr1 37610681 37610824 -159584608 - URR1A DNA MER1_type -94 132 5 2 871 359 232 17 67 chr1 37611212 37611332 -159584100 - HAL1-3A_ME LINE L1 -770 2088 1975 2 871 569 258 4 3 chr1 37611332 37611619 -159583813 + (TG)n Simple_repeat Simple_repeat 1 287 0 2 871 794 306 34 61 chr1 37611626 37611919 -159583513 - B4 SINE B4 -2 290 6 2 871 7257 49 1 3 chr1 37612786 37613675 -159581757 + L1Md_F2 LINE L1 5696 6582 0 2 871 225 298 83 21 chr1 37613907 37614003 -159581429 - PB1 SINE Alu -25 102 1 2 871 290 328 26 29 chr1 37615811 37615954 -159579478 + MLT1A1 LTR MaLR 3 141 -233 2 871 457 210 84 0 chr1 37615950 37616069 -159579363 - B1F SINE Alu -12 137 9 2 871 928 166 0 27 chr1 37616162 37616311 -159579121 - B1_Mur4 SINE Alu 0 150 6 2 871 189 0 0 0 chr1 37616336 37616357 -159579075 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2 871 805 258 14 20 chr1 37616749 37616960 -159578472 + B3A SINE B2 15 206 -10 2 872 279 41 40 20 chr1 37617746 37617796 -159577636 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 872 564 15 0 0 chr1 37617805 37617870 -159577562 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 872 1092 239 51 134 chr1 37617959 37618370 -159577062 - MTE2a LTR MaLR -2 377 1 2 872 850 204 0 7 chr1 37618423 37618571 -159576861 + B1_Mur1 SINE Alu 2 148 -1 2 872 1137 290 114 48 chr1 37619151 37619667 -159575765 + L1MA8 LINE L1 5548 6102 -189 2 872 1810 119 137 40 chr1 37619667 37620017 -159575415 + ORR1C2 LTR MaLR 1 384 0 2 872 1137 290 114 48 chr1 37620017 37620062 -159575370 + L1MA8 LINE L1 6103 6146 -145 2 872 962 285 87 42 chr1 37620277 37620920 -159574512 + Lx7 LINE L1 5462 6149 -1547 2 872 571 303 101 58 chr1 37621377 37621654 -159573778 + B4A SINE B4 2 290 -2 2 872 734 134 6 0 chr1 37621673 37621837 -159573595 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 2 872 297 0 0 0 chr1 37622851 37622884 -159572548 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 872 553 220 51 0 chr1 37622963 37623081 -159572351 - RSINE1 SINE B4 -40 125 2 2 872 567 0 0 0 chr1 37623250 37623313 -159572119 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 872 409 290 90 32 chr1 37623545 37623734 -159571698 + RMER2 LTR ERV1 368 567 0 2 872 640 262 55 55 chr1 37623732 37623934 -159571498 - Tigger1 DNA MER2_type 0 2418 2217 2 872 289 275 0 0 chr1 37623946 37624015 -159571417 + ID2 SINE ID 15 83 0 2 872 1515 28 0 0 chr1 37624285 37624465 -159570967 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 872 474 294 82 78 chr1 37624605 37624860 -159570572 + B4 SINE B4 2 257 -35 2 872 205 256 0 0 chr1 37624921 37624960 -159570472 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 872 261 229 36 27 chr1 37625236 37625331 -159570101 + MIR SINE MIR 79 176 -92 2 872 1184 49 7 0 chr1 37625936 37626080 -159569352 + B1_Mm SINE Alu 2 146 -1 2 872 194 0 39 0 chr1 37626080 37626106 -159569326 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 872 619 197 70 16 chr1 37626237 37626366 -159569066 - B1_Mur3 SINE Alu -13 136 1 2 872 1291 266 48 7 chr1 37626437 37626930 -159568502 - Lx7 LINE L1 -1589 6055 5528 2 872 1440 303 35 32 chr1 37626932 37627433 -159567999 + Lx8 LINE L1 6061 6573 -900 2 872 298 113 42 0 chr1 37627431 37627502 -159567930 + Lx4A LINE L1 6983 7056 -2 2 872 498 304 53 60 chr1 37627514 37627772 -159567660 + Lx8 LINE L1 6976 7259 -214 2 872 526 302 32 39 chr1 37628010 37628165 -159567267 - RSINE1 SINE B4 0 165 12 2 872 813 219 111 10 chr1 37628160 37628367 -159567065 - B4A SINE B4 -64 228 1 2 872 832 237 103 32 chr1 37628768 37629205 -159566227 + MT2A LTR ERVL 6 516 -85 2 872 275 72 0 23 chr1 37629206 37629249 -159566183 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 2 872 189 0 0 0 chr1 37631077 37631098 -159564334 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 872 367 225 49 12 chr1 37631105 37631186 -159564246 - B3A SINE B2 -113 85 2 2 872 2741 161 143 35 chr1 37631922 37632726 -159562706 - RMER19B LTR ERVK -12 890 1 2 872 1309 246 19 74 chr1 37632980 37633526 -159561906 + RMER1B Other Other 185 750 -316 2 872 315 0 0 0 chr1 37633784 37633819 -159561613 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 872 444 19 0 0 chr1 37633819 37633871 -159561561 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 872 2517 187 33 45 chr1 37633934 37634447 -159560985 + RLTR18B LTR ERVK 1 614 -2 2 872 360 360 90 26 chr1 37634447 37634493 -159560939 - MLT1B LTR MaLR -194 196 141 2 872 623 294 21 5 chr1 37634493 37634519 -159560913 - B3A SINE B2 -5 193 167 2 872 441 0 0 0 chr1 37634519 37634568 -159560864 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 872 623 294 21 5 chr1 37634568 37634729 -159560703 - B3A SINE B2 -32 166 3 2 872 360 360 90 26 chr1 37634729 37634844 -159560588 - MLT1B LTR MaLR -250 140 21 2 872 184 309 119 0 chr1 37635794 37635878 -159559554 + L2 LINE L2 2194 2287 -1132 2 872 338 200 239 17 chr1 37636727 37636844 -159558588 + MER5A1 DNA MER1_type 18 160 -6 2 872 302 339 37 0 chr1 37637524 37637633 -159557799 + ORR1E LTR MaLR 1 113 -246 3 872 183 156 0 0 chr1 37637686 37637718 -159557714 + CT-rich Low_complexity Low_complexity 1 32 0 3 872 277 282 0 90 chr1 37638079 37638157 -159557275 - MER63D DNA AcHobo -685 376 306 3 872 1056 108 0 20 chr1 37638259 37638410 -159557022 + B1_Mus1 SINE Alu 1 148 0 3 872 22 56 0 0 chr1 37638410 37638446 -159556986 + AT_rich Low_complexity Low_complexity 1 36 0 3 872 216 186 0 0 chr1 37638548 37638607 -159556825 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 872 268 324 40 0 chr1 37638608 37638682 -159556750 + MER2B DNA MER2_type 82 158 -178 3 872 602 336 31 36 chr1 37638817 37639042 -159556390 + MER2 DNA MER2_type 122 345 0 3 872 732 313 82 31 chr1 37639042 37639328 -159556104 - MER21B LTR ERV1 -336 527 226 3 872 744 253 83 16 chr1 37639864 37640057 -159555375 - MLT1A0 LTR MaLR 0 365 160 3 872 355 254 43 107 chr1 37640079 37640313 -159555119 - RMER12 LTR ERVK -334 988 770 3 872 201 156 0 0 chr1 37640314 37640346 -159555086 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 872 363 333 17 17 chr1 37640346 37640465 -159554967 - MLT1A0 LTR MaLR -238 127 9 3 872 453 213 0 0 chr1 37641520 37641628 -159553804 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 872 749 223 0 3 chr1 37641643 37641964 -159553468 + (TG)n Simple_repeat Simple_repeat 1 320 0 3 872 547 351 91 8 chr1 37642390 37642741 -159552691 - Tigger5 DNA MER2_type -6 2400 2021 3 872 322 364 23 8 chr1 37642768 37642901 -159552531 - Tigger5 DNA MER2_type -2271 135 1 3 872 333 317 146 27 chr1 37642934 37643119 -159552313 - MLT2B2 LTR ERVL -80 435 229 3 872 14413 93 15 51 chr1 37643325 37644308 -159551124 + L1_Mus2 LINE L1 3739 4729 -1154 3 872 225 0 0 0 chr1 37644308 37644333 -159551099 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 872 14413 95 14 50 chr1 37644333 37645607 -159549825 + L1_Mus2 LINE L1 4730 5915 -1135 3 872 412 138 12 0 chr1 37645742 37645822 -159549610 - L1_Mus3 LINE L1 -1 6637 6557 3 872 282 100 0 0 chr1 37645823 37645863 -159549569 - L1_Mm LINE L1 -390 5493 5454 3 872 5220 57 3 28 chr1 37645866 37646540 -159548892 + L1_Mus2 LINE L1 5910 6566 0 3 872 344 340 143 0 chr1 37647142 37647289 -159548143 + ID_B1 SINE B4 3 170 -54 3 872 420 205 40 0 chr1 37647297 37647448 -159547984 + GA-rich Low_complexity Low_complexity 2 158 0 3 872 478 279 57 16 chr1 37647814 37647938 -159547494 - RSINE1 SINE B4 -35 130 2 3 872 288 295 51 0 chr1 37647959 37648037 -159547395 - ID4_ SINE ID -1 82 1 3 872 541 304 0 0 chr1 37648073 37648208 -159547224 + B1F SINE Alu 15 149 0 3 872 305 244 8 70 chr1 37648326 37648454 -159546978 - Lx6 LINE L1 -164 7296 7177 3 872 2134 109 94 0 chr1 37648452 37648791 -159546641 + RMER1B Other Other 696 1066 0 3 872 292 250 11 21 chr1 37648761 37648855 -159546577 - Lx7 LINE L1 -221 7475 7383 3 872 33 43 0 0 chr1 37648856 37648903 -159546529 + AT_rich Low_complexity Low_complexity 1 47 0 3 872 1246 183 72 25 chr1 37648958 37649194 -159546238 - Lx6 LINE L1 -331 7129 6883 3 872 207 0 0 0 chr1 37649574 37649597 -159545835 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 872 474 135 14 0 chr1 37649609 37649683 -159545749 + RLTR16 LTR ERVK 7 81 -424 3 872 182 37 0 36 chr1 37649968 37649996 -159545436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 872 1378 95 11 5 chr1 37650006 37650197 -159545235 + B2_Mm2 SINE B2 1 192 -3 3 872 930 221 83 116 chr1 37650373 37650551 -159544881 + B4A SINE B4 1 203 -89 3 872 1629 155 155 21 chr1 37650551 37650880 -159544552 - ORR1D1 LTR MaLR 0 374 2 3 872 930 221 83 116 chr1 37650880 37651003 -159544429 + B4A SINE B4 204 292 0 3 872 222 271 17 0 chr1 37651013 37651072 -159544360 + (CATG)n Simple_repeat Simple_repeat 3 62 0 3 872 227 281 236 0 chr1 37651207 37651296 -159544136 + B1F SINE Alu 35 144 -5 3 872 307 352 0 0 chr1 37651412 37651500 -159543932 - PB1D10 SINE Alu -16 101 14 3 872 394 305 140 6 chr1 37651527 37651705 -159543727 + MER58A DNA MER1_type 7 208 -16 3 872 1158 89 0 0 chr1 37651899 37652045 -159543387 - B1_Mus1 SINE Alu -1 147 2 3 872 538 60 0 24 chr1 37652621 37652706 -159542726 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 3 872 357 278 44 22 chr1 37653341 37653477 -159541955 + Lx7 LINE L1 5718 5856 -1840 3 872 308 246 83 107 chr1 37653758 37654106 -159541326 - RMER17A2 LTR ERVK -505 401 136 3 872 222 246 0 81 chr1 37654244 37654306 -159541126 + PB1 SINE Alu 63 134 -15 3 872 339 299 20 20 chr1 37654322 37654469 -159540963 + L1MEf LINE L1 2042 2188 -4054 3 872 282 206 0 0 chr1 37654490 37654558 -159540874 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 872 342 197 7 36 chr1 37654625 37654762 -159540670 + (TA)n Simple_repeat Simple_repeat 1 133 0 3 872 340 174 14 68 chr1 37654814 37654888 -159540544 + ID4_ SINE ID 1 70 -13 3 872 646 207 43 22 chr1 37655585 37655723 -159539709 + B1F SINE Alu 9 149 0 3 872 260 364 15 36 chr1 37655885 37656022 -159539410 + L1MEf LINE L1 2346 2479 -3667 3 872 552 89 0 0 chr1 37656413 37656492 -159538940 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 872 241 252 199 92 chr1 37656989 37657120 -159538312 - MLT1B LTR MaLR -46 344 200 3 872 243 286 30 90 chr1 37657151 37657251 -159538181 - MLT1B LTR MaLR -289 101 8 3 872 322 276 86 43 chr1 37658269 37658409 -159537023 - HAL1-3A_ME LINE L1 -738 2120 1975 3 872 643 290 74 97 chr1 37658411 37658709 -159536723 - B4A SINE B4 0 292 2 3 872 275 261 43 0 chr1 37659708 37659777 -159535655 + PB1D10 SINE Alu 22 93 -24 3 872 245 279 111 92 chr1 37659756 37659973 -159535459 - ORR1D2 LTR MaLR -128 242 22 3 872 448 290 111 128 chr1 37660022 37660390 -159535042 - MLT1F1 LTR MaLR -2 567 206 3 872 373 276 86 0 chr1 37660425 37660530 -159534902 + B3A SINE B2 2 115 -83 3 872 297 0 0 0 chr1 37660554 37660587 -159534845 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 872 646 244 21 131 chr1 37660612 37660806 -159534626 - B4 SINE B4 -81 211 38 3 872 3530 25 2 0 chr1 37660806 37661201 -159534231 + MTA_Mm LTR MaLR 1 396 0 3 872 9820 17 0 0 chr1 37661201 37662299 -159533133 + MTA_Mm-int LTR MaLR 1 1098 0 3 872 3530 25 2 0 chr1 37662299 37662694 -159532738 + MTA_Mm LTR MaLR 1 396 0 3 872 646 244 21 131 chr1 37662694 37662733 -159532699 - B4 SINE B4 -255 37 4 3 872 718 298 23 151 chr1 37662756 37662853 -159532579 + Tigger7 DNA MER2_type 24 114 -2377 3 872 198 0 0 0 chr1 37662853 37662875 -159532557 + (TTA)n Simple_repeat Simple_repeat 2 23 0 3 872 718 298 23 151 chr1 37662875 37663215 -159532217 + Tigger7 DNA MER2_type 115 405 -2086 3 872 229 191 64 0 chr1 37663349 37663396 -159532036 - MLT1F1 LTR MaLR -510 59 10 3 872 24 0 0 0 chr1 37663701 37663725 -159531707 + GC_rich Low_complexity Low_complexity 1 24 0 3 872 238 240 41 68 chr1 37664360 37664461 -159530971 + B4 SINE B4 87 178 -114 3 872 225 65 0 0 chr1 37664566 37664597 -159530835 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 872 1142 204 44 48 chr1 37664844 37665224 -159530208 + RLTR24 LTR ERV1 1 451 -78 3 872 1138 81 0 33 chr1 37665436 37665589 -159529843 - B1_Mus1 SINE Alu 0 148 1 3 872 348 208 91 0 chr1 37666435 37666512 -159528920 + BC1_Mm scRNA scRNA 2 85 -67 3 872 2252 72 23 75 chr1 37666526 37666871 -159528561 + ORR1A2 LTR MaLR 1 327 0 3 872 1266 225 173 14 chr1 37667890 37668242 -159527190 + MTD LTR MaLR 12 419 0 3 872 24 0 0 0 chr1 37669592 37669616 -159525816 + AT_rich Low_complexity Low_complexity 1 24 0 3 872 348 309 130 72 chr1 37669728 37670004 -159525428 + L1MB5 LINE L1 5883 6174 0 3 872 267 290 0 0 chr1 37670085 37670147 -159525285 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 872 185 203 46 92 chr1 37672418 37672483 -159522949 + L3 LINE CR1 2133 2194 -2295 3 872 623 200 90 43 chr1 37672550 37672738 -159522694 + B3 SINE B2 2 198 -18 3 872 182 300 14 28 chr1 37674030 37674102 -159521330 + MIRb SINE MIR 163 233 -35 3 872 222 302 0 0 chr1 37674739 37674868 -159520564 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 872 857 233 142 31 chr1 37674969 37675230 -159520202 - B4A SINE B4 -2 290 1 3 872 459 228 143 45 chr1 37675960 37676093 -159519339 + B4A SINE B4 147 292 0 3 872 508 255 21 165 chr1 37676682 37676870 -159518562 + RSINE1 SINE B4 3 163 -2 3 872 397 336 84 50 chr1 37676921 37677159 -159518273 - ORR1E LTR MaLR -106 253 8 3 872 463 256 27 82 chr1 37677258 37677441 -159517991 + MTD LTR MaLR 6 178 -241 3 872 479 277 48 28 chr1 37677354 37677499 -159517933 + MT2A LTR ERVL 63 210 -323 3 872 378 0 0 0 chr1 37677967 37678009 -159517423 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 872 1249 245 65 27 chr1 37678010 37678406 -159517026 + MTD LTR MaLR 1 405 -14 3 872 324 286 55 37 chr1 37678443 37678552 -159516880 - PB1D9 SINE Alu -9 111 1 3 872 471 63 0 0 chr1 37678838 37678901 -159516531 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 872 565 249 54 48 chr1 37680174 37680360 -159515072 - B3A SINE B2 -11 187 1 3 872 406 239 24 57 chr1 37683176 37683236 -159512196 + PB1D9 SINE Alu 1 61 -59 3 872 180 77 0 0 chr1 37683236 37683262 -159512170 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 3 872 406 239 24 57 chr1 37683262 37683325 -159512107 + PB1D9 SINE Alu 62 120 0 3 872 353 227 13 0 chr1 37683791 37683866 -159511566 - ID4 SINE ID -4 79 4 3 872 2701 120 50 5 chr1 37685948 37686351 -159509081 - MTC LTR MaLR 0 421 1 3 872 738 149 72 29 chr1 37686504 37686642 -159508790 - B1_Mur4 SINE Alu -1 149 6 3 872 343 252 25 67 chr1 37686541 37686660 -159508772 - MT2B LTR ERVL -337 264 151 3 872 214 195 24 0 chr1 37689606 37689647 -159505785 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 872 368 345 114 25 chr1 37690424 37690752 -159504680 + L1MC4a LINE L1 6670 7050 -992 3 872 871 302 19 0 chr1 37690769 37690984 -159504448 + ID_B1 SINE B4 6 224 0 3 872 237 347 41 14 chr1 37690865 37691011 -159504421 - YREP_Mm Unknown Unknown -1516 296 147 3 872 27 29 0 0 chr1 37691188 37691222 -159504210 + AT_rich Low_complexity Low_complexity 1 34 0 3 872 1018 206 42 0 chr1 37691228 37691417 -159504015 - B3 SINE B2 -19 197 1 3 872 672 143 67 15 chr1 37691608 37691743 -159503689 + B2_Mm2 SINE B2 38 179 -16 4 872 1047 147 167 5 chr1 37691803 37691995 -159503437 - URR1A DNA MER1_type 0 226 4 4 872 206 156 0 72 chr1 37692310 37692357 -159503075 + T-rich Low_complexity Low_complexity 19 64 0 4 872 1213 48 7 0 chr1 37692357 37692503 -159502929 - B1_Mus2 SINE Alu 0 147 1 4 872 206 156 0 72 chr1 37692503 37692524 -159502908 + T-rich Low_complexity Low_complexity 1 18 0 4 872 504 0 0 0 chr1 37692544 37692600 -159502832 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 872 423 0 0 0 chr1 37692600 37692646 -159502786 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 872 457 231 47 19 chr1 37692691 37692797 -159502635 - B3A SINE B2 -82 116 8 4 872 219 88 0 0 chr1 37693135 37693169 -159502263 + (G)n Simple_repeat Simple_repeat 1 34 0 4 872 245 321 24 0 chr1 37693721 37693805 -159501627 - RSINE1 SINE B4 -2 163 78 4 872 1497 39 28 0 chr1 37694031 37694211 -159501221 - B2_Mm2 SINE B2 -8 187 3 4 872 713 223 147 0 chr1 37694246 37694430 -159501002 - B3 SINE B2 -5 211 1 4 872 22 0 0 0 chr1 37695008 37695030 -159500402 + AT_rich Low_complexity Low_complexity 1 22 0 4 872 713 249 75 16 chr1 37695032 37695220 -159500212 - B3 SINE B2 -14 202 4 4 872 21 0 0 0 chr1 37695416 37695437 -159499995 + AT_rich Low_complexity Low_complexity 1 21 0 4 872 338 344 108 22 chr1 37696299 37696522 -159498910 - L1MEg LINE L1 -2658 3724 3483 4 872 392 326 98 28 chr1 37696645 37696970 -159498462 - L1MEg LINE L1 -3097 3285 2938 4 872 23 0 0 0 chr1 37697064 37697087 -159498345 + AT_rich Low_complexity Low_complexity 1 23 0 4 872 180 0 0 0 chr1 37697167 37697187 -159498245 + (T)n Simple_repeat Simple_repeat 1 20 0 4 872 1156 75 0 7 chr1 37697187 37697334 -159498098 - B1_Mm SINE Alu 0 147 2 4 872 362 346 93 25 chr1 37697481 37697723 -159497709 - L1MEg LINE L1 -4783 1695 1284 4 872 821 188 159 0 chr1 37697729 37697899 -159497533 - B3A SINE B2 0 198 2 4 872 282 294 21 11 chr1 37698402 37698495 -159496937 - L1MD LINE L1 -525 5834 5741 4 872 255 140 20 20 chr1 37698567 37698618 -159496814 - L1MD LINE L1 -2400 5595 5545 4 872 26 0 0 0 chr1 37698687 37698713 -159496719 + AT_rich Low_complexity Low_complexity 1 26 0 4 872 346 283 91 36 chr1 37698727 37698892 -159496540 - L1M4 LINE L1 -774 5372 5199 4 872 919 133 54 12 chr1 37698892 37698910 -159496522 - B2_Mm2 SINE B2 -19 176 159 4 872 315 0 0 0 chr1 37698910 37698945 -159496487 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 872 919 133 54 12 chr1 37698945 37699094 -159496338 - B2_Mm2 SINE B2 -37 158 3 4 872 385 314 117 35 chr1 37699096 37699327 -159496105 - L1MD LINE L1 -946 5200 4951 4 872 222 37 0 0 chr1 37699416 37699443 -159495989 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 872 207 100 0 0 chr1 37699477 37699507 -159495925 + (TATG)n Simple_repeat Simple_repeat 2 31 0 4 872 360 0 0 0 chr1 37699507 37699547 -159495885 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 872 595 216 192 30 chr1 37699548 37699715 -159495717 - B3 SINE B2 -21 195 2 4 872 424 200 104 10 chr1 37699730 37699826 -159495606 - ID_B1 SINE B4 -5 219 115 4 872 310 182 0 35 chr1 37701748 37701805 -159493627 - L1ME4a LINE L1 -65 6059 6005 4 872 216 0 0 0 chr1 37702271 37702295 -159493137 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 872 370 228 16 0 chr1 37702563 37702690 -159492742 + (CAT)n Simple_repeat Simple_repeat 3 131 0 4 872 362 259 41 135 chr1 37702690 37702703 -159492729 - B4A SINE B4 -60 232 126 4 872 783 157 0 63 chr1 37702703 37702803 -159492629 - B1_Mur1 SINE Alu -10 139 40 4 872 2259 178 29 10 chr1 37702803 37703211 -159492221 - MTD LTR MaLR 0 419 4 4 872 783 157 0 63 chr1 37703211 37703253 -159492179 - B1_Mur1 SINE Alu -110 39 6 4 872 362 259 41 135 chr1 37703253 37703267 -159492165 - B4A SINE B4 -167 125 79 4 872 369 0 0 0 chr1 37703275 37703316 -159492116 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 872 342 0 0 0 chr1 37703316 37703353 -159492079 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 872 183 100 0 0 chr1 37703360 37703390 -159492042 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 872 247 263 39 13 chr1 37703392 37703469 -159491963 - B3A SINE B2 -95 103 25 4 872 3214 73 20 0 chr1 37704735 37705134 -159490298 + MTB_Mm LTR MaLR 1 407 0 4 872 270 0 0 0 chr1 37705210 37705240 -159490192 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 872 7138 84 36 7 chr1 37705240 37706472 -159488960 - Lx LINE L1 -11 6643 5372 4 872 2747 155 8 4 chr1 37706467 37706966 -159488466 + L1_Mur2 LINE L1 4856 5356 -521 4 872 801 295 205 31 chr1 37707018 37707340 -159488092 - MTEb LTR MaLR 0 379 2 4 872 230 143 24 0 chr1 37709124 37709166 -159486266 + L1M4b LINE L1 1481 1523 -5473 4 872 448 317 166 50 chr1 37709188 37709550 -159485882 + L1M4b LINE L1 1549 1952 -5150 4 872 1100 210 5 14 chr1 37709733 37709946 -159485486 + B3 SINE B2 1 211 -5 4 872 213 264 0 0 chr1 37709977 37710049 -159485383 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 872 326 355 57 21 chr1 37710077 37710218 -159485214 + L1M4b LINE L1 2402 2547 -4555 4 872 431 338 153 50 chr1 37710360 37710915 -159484517 + L1MEf LINE L1 1280 1891 -4309 4 872 1264 166 19 0 chr1 37710922 37711133 -159484299 + B3 SINE B2 1 215 -1 4 872 451 237 70 0 chr1 37711338 37711452 -159483980 + L1M4b LINE L1 2581 2702 -4632 4 872 1016 108 36 83 chr1 37711474 37711666 -159483766 + B2_Mm2 SINE B2 3 185 -10 4 872 861 220 35 30 chr1 37711671 37711868 -159483564 + B3A SINE B2 1 198 0 4 872 661 274 98 15 chr1 37711870 37712074 -159483358 + MER88 LTR ERVL 13 233 -231 4 872 445 104 26 0 chr1 37712306 37712383 -159483049 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 872 1350 224 87 49 chr1 37712519 37712945 -159482487 + RLTR11A LTR ERVK 27 528 0 4 872 512 374 20 43 chr1 37713394 37713693 -159481739 + B4A SINE B4 1 292 0 4 872 276 28 0 0 chr1 37713776 37713812 -159481620 + B2_Mm2 SINE B2 2 37 -158 4 872 1345 150 24 0 chr1 37713979 37714186 -159481246 + B3 SINE B2 2 213 -3 4 872 230 293 26 8 chr1 37714262 37714379 -159481053 + L1M4b LINE L1 3187 3305 -3701 4 872 507 96 102 39 chr1 37714542 37714646 -159480786 - B1_Mur3 SINE Alu -20 129 1 4 872 279 214 298 57 chr1 37714646 37714677 -159480755 - MT2B LTR ERVL -416 185 125 4 872 234 256 0 0 chr1 37714795 37714838 -159480594 - B4A SINE B4 -146 146 104 4 872 285 315 0 0 chr1 37714963 37715128 -159480304 + (CA)n Simple_repeat Simple_repeat 2 166 0 4 872 408 294 64 46 chr1 37715191 37715519 -159479913 + L1M4b LINE L1 3403 3736 -3270 4 872 267 251 70 40 chr1 37715513 37715712 -159479720 + L1M4 LINE L1 2334 2538 -3608 4 872 313 289 72 67 chr1 37715867 37716060 -159479372 + B3A SINE B2 1 194 -4 4 872 753 293 127 22 chr1 37716065 37716554 -159478878 + L1M4b LINE L1 5604 6143 -863 4 872 1773 279 116 36 chr1 37716866 37718140 -159477292 + L1M4c LINE L1 19 1488 -4896 4 872 689 237 76 12 chr1 37718599 37718770 -159476662 + B3A SINE B2 1 182 -16 4 872 657 0 0 0 chr1 37718780 37718853 -159476579 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 4 872 354 45 0 0 chr1 37718859 37718903 -159476529 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 872 202 278 117 45 chr1 37719074 37719295 -159476137 + L2c LINE L2 2959 3184 -191 4 872 368 307 42 91 chr1 37719398 37719663 -159475769 + LTR84b LTR ERVL 29 280 -477 4 872 321 68 0 0 chr1 37720120 37720164 -159475268 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 4 872 342 0 0 0 chr1 37720829 37720867 -159474565 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 872 23 33 0 0 chr1 37720898 37720928 -159474504 + AT_rich Low_complexity Low_complexity 1 30 0 4 872 189 0 0 0 chr1 37720952 37720973 -159474459 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 872 306 107 0 0 chr1 37724592 37724648 -159470784 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 872 279 0 0 0 chr1 37724658 37724689 -159470743 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 872 810 278 38 45 chr1 37724691 37724958 -159470474 - B4A SINE B4 -23 269 5 4 872 192 376 55 37 chr1 37725112 37725275 -159470157 - MIRb SINE MIR -71 197 32 4 872 236 301 12 12 chr1 37725356 37725440 -159469992 + L1M5 LINE L1 5574 5657 -467 4 872 546 292 93 5 chr1 37726186 37726333 -159469099 + B3 SINE B2 2 163 -53 4 872 312 70 0 0 chr1 37726333 37726376 -159469056 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 872 546 292 93 5 chr1 37726376 37726421 -159469011 + B3 SINE B2 164 211 -5 4 872 775 174 11 0 chr1 37726490 37726668 -159468764 + GA-rich Low_complexity Low_complexity 1 180 0 4 872 277 240 247 10 chr1 37728360 37728457 -159466975 - MER117 DNA MER1_type -28 169 50 4 872 880 268 78 46 chr1 37728752 37728820 -159466612 - B4 SINE B4 0 292 225 4 872 378 0 0 0 chr1 37728820 37728862 -159466570 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 872 880 268 78 46 chr1 37728862 37729075 -159466357 - B4 SINE B4 -68 224 3 4 872 1308 78 62 0 chr1 37729524 37729703 -159465729 + B2_Mm2 SINE B2 2 191 -4 4 872 3271 273 109 14 chr1 37729706 37730930 -159464502 - Lx8 LINE L1 -4 7469 6129 4 872 621 217 0 0 chr1 37731902 37732077 -159463355 + (CA)n Simple_repeat Simple_repeat 1 175 0 4 872 396 72 0 18 chr1 37736362 37736419 -159459013 - B1_Mus1 SINE Alu -91 57 2 4 872 314 253 0 0 chr1 37736448 37736535 -159458897 + (ATG)n Simple_repeat Simple_repeat 1 87 0 4 872 348 305 221 35 chr1 37736586 37736817 -159458615 + L1M4 LINE L1 781 1054 -5850 4 872 537 290 136 70 chr1 37737155 37737483 -159457949 + L1M4 LINE L1 977 1307 -5597 4 872 1204 54 0 0 chr1 37737483 37737630 -159457802 + B1_Mus1 SINE Alu 1 147 -1 4 872 537 290 136 70 chr1 37737630 37737943 -159457489 + L1M4 LINE L1 1308 1659 -5245 4 872 479 286 9 0 chr1 37737945 37738057 -159457375 + RSINE1 SINE B4 8 120 -45 4 872 243 362 53 0 chr1 37738080 37738174 -159457258 - MTD LTR MaLR -284 135 37 4 872 418 215 76 0 chr1 37738194 37738273 -159457159 - ID_B1 SINE B4 -56 168 84 4 872 520 286 113 57 chr1 37738276 37738699 -159456733 + L1M4 LINE L1 1659 2144 -4864 4 872 304 242 32 16 chr1 37738915 37738978 -159456454 + L1M4 LINE L1 2264 2327 -4681 4 872 1511 268 120 49 chr1 37739159 37740729 -159454703 + L1M4 LINE L1 2652 4326 -2680 4 872 260 175 17 34 chr1 37740849 37740908 -159454524 + L1MB7 LINE L1 6036 6093 -91 4 872 1151 219 59 8 chr1 37741132 37741385 -159454047 - B4A SINE B4 0 292 27 4 872 882 49 19 0 chr1 37741420 37741550 -159453882 - B1_Mm SINE Alu 0 149 5 4 872 1709 214 137 104 chr1 37741613 37742307 -159453125 + RMER6D LTR ERVK 3 719 -1 4 872 564 257 88 0 chr1 37742554 37742702 -159452730 - ID_B1 SINE B4 0 224 64 5 872 360 0 0 0 chr1 37743404 37743444 -159451988 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 872 364 294 20 29 chr1 37743943 37744235 -159451197 - L1MD1 LINE L1 -61 6118 5831 5 872 210 355 0 0 chr1 37745695 37745757 -159449675 + B3A SINE B2 86 147 -51 5 872 378 0 0 0 chr1 37745765 37745807 -159449625 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 872 261 0 0 0 chr1 37745883 37745912 -159449520 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 5 872 333 309 0 0 chr1 37746645 37746726 -159448706 - ID4 SINE ID 0 83 3 5 872 702 286 16 64 chr1 37747651 37747838 -159447594 - B3A SINE B2 -20 178 1 5 872 378 301 149 9 chr1 37747988 37748203 -159447229 - L2a LINE L2 -2 3424 3180 5 873 321 26 0 0 chr1 37749274 37749312 -159446120 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 873 189 0 0 0 chr1 37750234 37750255 -159445177 + (A)n Simple_repeat Simple_repeat 1 21 0 5 873 235 266 24 135 chr1 37751121 37751247 -159444185 - MLT1I LTR MaLR -257 154 43 5 873 876 211 22 17 chr1 37751844 37752022 -159443410 - URR1B DNA MER1_type -1 224 46 5 873 345 154 92 0 chr1 37752262 37752327 -159443105 + ID4 SINE ID 3 73 -10 5 873 207 160 40 0 chr1 37752331 37752381 -159443051 + (TAA)n Simple_repeat Simple_repeat 2 53 0 5 873 495 0 0 0 chr1 37755091 37755146 -159440286 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 873 1699 148 19 4 chr1 37756876 37757147 -159438285 - ORR1B2 LTR MaLR -9 358 84 5 873 397 343 20 15 chr1 37757350 37757551 -159437881 - L1M5 LINE L1 -381 5743 5542 5 873 725 167 9 0 chr1 37757768 37757882 -159437550 + PB1D10 SINE Alu 1 115 -2 5 873 306 234 16 0 chr1 37758083 37758147 -159437285 - L1M2 LINE L1 -1092 5051 4987 5 873 236 53 26 0 chr1 37758176 37758214 -159437218 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 873 643 229 31 108 chr1 37760001 37760260 -159435172 - ORSL DNA Tip100 -8 267 29 5 873 4123 89 100 9 chr1 37761161 37761838 -159433594 + L1_Mur2 LINE L1 4425 5163 -714 5 873 36 40 0 0 chr1 37762005 37762055 -159433377 + AT_rich Low_complexity Low_complexity 1 50 0 5 873 373 308 64 17 chr1 37762330 37762502 -159432930 + Charlie23a DNA MER1_type 121 300 -39 5 873 422 330 219 21 chr1 37762546 37762784 -159432648 + B4A SINE B4 8 292 0 5 873 361 284 99 103 chr1 37762901 37763164 -159432268 + ORR1E LTR MaLR 39 300 -59 5 873 1086 199 23 19 chr1 37763679 37763894 -159431538 - B3 SINE B2 0 216 1 5 873 263 315 24 70 chr1 37764037 37764191 -159431241 + MLT1A LTR MaLR 7 152 -222 5 873 930 180 14 81 chr1 37765190 37765401 -159430031 + B3A SINE B2 1 197 -1 5 873 214 310 137 20 chr1 37765436 37765538 -159429894 + MIRm SINE MIR 67 180 -96 5 873 183 319 75 8 chr1 37765605 37765725 -159429707 + MIR3 SINE MIR 2 129 -79 5 873 288 0 0 0 chr1 37765922 37765954 -159429478 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 873 251 284 13 13 chr1 37766143 37766218 -159429214 + GA-rich Low_complexity Low_complexity 1 75 0 5 873 229 200 11 130 chr1 37766366 37766458 -159428974 - RMER21A LTR ERV1 -236 711 631 5 873 445 286 33 8 chr1 37767884 37768004 -159427428 + ORR1E LTR MaLR 24 146 -213 5 873 192 143 0 0 chr1 37768004 37768046 -159427386 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 873 381 281 105 24 chr1 37768059 37768258 -159427174 + ORR1E LTR MaLR 152 379 0 5 873 768 205 123 6 chr1 37768276 37768438 -159426994 + B3A SINE B2 2 182 -16 5 873 1068 242 72 20 chr1 37768471 37768720 -159426712 - MER2 DNA MER2_type -83 262 1 5 873 3611 72 8 25 chr1 37769426 37769909 -159425523 - MT2C_Mm LTR ERVL 0 475 1 5 873 556 257 76 32 chr1 37770024 37770181 -159425251 + B3A SINE B2 2 165 -33 5 873 578 89 11 0 chr1 37770224 37770314 -159425118 + (TATG)n Simple_repeat Simple_repeat 1 91 0 5 873 288 290 158 18 chr1 37771510 37771541 -159423891 - B2_Mm1a SINE B2 -5 188 1 5 873 701 226 15 8 chr1 37771541 37771675 -159423757 - RSINE1 SINE B4 -29 136 2 5 873 345 305 0 0 chr1 37771793 37771967 -159423465 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 873 609 232 25 19 chr1 37773274 37773458 -159421974 - L1MA4 LINE L1 -46 6254 6071 5 873 554 261 76 14 chr1 37774496 37774640 -159420792 - MLT1A0 LTR MaLR -12 353 201 5 873 491 273 24 29 chr1 37775074 37775244 -159420188 + MER96B DNA hAT 66 234 -183 5 873 251 85 21 0 chr1 37775678 37775725 -159419707 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 5 873 22 0 0 0 chr1 37776673 37776695 -159418737 + GC_rich Low_complexity Low_complexity 1 22 0 5 873 236 231 31 0 chr1 37776701 37776766 -159418666 + (CTCCG)n Simple_repeat Simple_repeat 2 68 0 5 873 225 0 0 0 chr1 37777175 37777200 -159418232 + (C)n Simple_repeat Simple_repeat 1 25 0 5 873 646 69 721 0 chr1 37778394 37778516 -159416916 - L1_Mus1 LINE L1 0 6567 6358 5 873 421 98 0 0 chr1 37778964 37779025 -159416407 - Lx LINE L1 -12 6642 6582 5 873 498 239 77 26 chr1 37779222 37779377 -159416055 + MTD LTR MaLR 1 163 -256 5 873 519 353 28 40 chr1 37779407 37779655 -159415777 + B4A SINE B4 44 288 -4 5 873 636 231 0 29 chr1 37779711 37779849 -159415583 + RSINE1 SINE B4 4 137 -28 5 873 28 91 0 0 chr1 37779868 37779945 -159415487 + AT_rich Low_complexity Low_complexity 1 77 0 5 873 252 0 0 0 chr1 37780265 37780293 -159415139 + (C)n Simple_repeat Simple_repeat 1 28 0 5 873 224 122 0 39 chr1 37780526 37780577 -159414855 + T-rich Low_complexity Low_complexity 3 51 0 5 873 280 292 107 36 chr1 37781228 37781452 -159413980 + MLT1D LTR MaLR 120 359 -146 5 873 226 250 14 14 chr1 37781792 37781861 -159413571 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 873 208 217 0 0 chr1 37784046 37784092 -159411340 + G-rich Low_complexity Low_complexity 1 46 0 5 873 287 25 25 0 chr1 37784856 37784896 -159410536 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 873 294 361 35 13 chr1 37785000 37785230 -159410202 + L1MEc LINE L1 152 386 -6014 5 873 271 375 35 7 chr1 37785427 37785572 -159409860 + MLT1C LTR MaLR 2 150 -317 5 873 1887 112 61 6 chr1 37785585 37785898 -159409534 - MTC LTR MaLR -25 396 67 5 873 446 47 0 30 chr1 37785900 37785966 -159409466 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 5 873 1270 79 89 6 chr1 37785966 37786145 -159409287 - B2_Mm2 SINE B2 -1 194 1 5 873 468 188 0 0 chr1 37786147 37786227 -159409205 - MTC LTR MaLR -341 80 1 5 873 722 265 85 10 chr1 37786229 37786523 -159408909 + MLT1C LTR MaLR 152 467 0 5 873 539 243 33 26 chr1 37786795 37786947 -159408485 + Lx9 LINE L1 6318 6470 -1174 5 873 912 183 95 9 chr1 37786948 37787158 -159408274 + ORR1D1-int LTR MaLR 1143 1370 0 5 873 1007 217 52 117 chr1 37787158 37787541 -159407891 + ORR1D1 LTR MaLR 15 372 -2 5 873 309 96 0 37 chr1 37787661 37787715 -159407717 + B3 SINE B2 2 53 -163 5 873 680 226 117 17 chr1 37787777 37787957 -159407475 - B3A SINE B2 0 198 1 5 873 3359 53 2 0 chr1 37788274 37788673 -159406759 - MTB LTR MaLR 0 400 1 5 873 303 28 0 0 chr1 37788826 37788862 -159406570 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 5 873 673 154 73 12 chr1 37788862 37789026 -159406406 + ORR1D1 LTR MaLR 25 198 -176 5 873 2320 85 321 2 chr1 37789476 37789887 -159405545 + Lx2 LINE L1 6450 6991 -6 5 873 291 302 12 0 chr1 37789924 37790010 -159405422 + ID_B1 SINE B4 82 168 -56 5 873 2736 128 110 25 chr1 37790208 37790736 -159404696 + RMER4B LTR ERVK 1 573 -12 5 873 1341 294 52 83 chr1 37790751 37791427 -159404005 + Lx9 LINE L1 6882 7530 -114 5 873 273 29 0 0 chr1 37791427 37791461 -159403971 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 5 873 1341 294 52 83 chr1 37791461 37791553 -159403879 + Lx9 LINE L1 7531 7626 -18 5 873 29 28 0 0 chr1 37791568 37791604 -159403828 + AT_rich Low_complexity Low_complexity 1 36 0 5 873 249 108 0 0 chr1 37792277 37792314 -159403118 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 873 1280 241 40 87 chr1 37792316 37792720 -159402712 + Lx6 LINE L1 6987 7371 -89 5 873 186 43 0 0 chr1 37793109 37793132 -159402300 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 873 1196 49 0 14 chr1 37793179 37793315 -159402117 + B1_Mm SINE Alu 2 137 -10 5 873 252 0 0 0 chr1 37793315 37793343 -159402089 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 873 456 216 41 0 chr1 37793688 37793785 -159401647 + ORR1D1 LTR MaLR 1 101 -273 5 873 871 92 131 0 chr1 37793785 37793915 -159401517 + B1_Mus1 SINE Alu 2 148 0 5 873 526 26 38 25 chr1 37793915 37793994 -159401438 + (GAAAA)n Simple_repeat Simple_repeat 5 84 0 5 873 1091 171 80 57 chr1 37794031 37794351 -159401081 + ORR1D1 LTR MaLR 39 374 0 5 873 1087 271 114 19 chr1 37794360 37794884 -159400548 + L1M4 LINE L1 4147 4720 -1426 5 873 762 204 0 7 chr1 37794899 37795052 -159400380 + B3A SINE B2 3 154 -44 5 873 423 0 0 0 chr1 37795052 37795099 -159400333 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 873 253 43 21 42 chr1 37795101 37795149 -159400283 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 5 873 1062 297 107 18 chr1 37795184 37795743 -159399689 + L1M4 LINE L1 4748 5356 -790 5 873 254 227 30 0 chr1 37796170 37796236 -159399196 + L1M4 LINE L1 5362 5429 -749 5 873 287 220 0 0 chr1 37796548 37796607 -159398825 - PB1D9 SINE Alu -19 101 43 5 873 2466 158 40 6 chr1 37796832 37797330 -159398102 - RLTR28 LTR ERVL 0 524 10 5 873 1417 193 100 9 chr1 37797332 37797651 -159397781 + L1_Rod LINE L1 2277 2624 -3223 5 873 2095 181 35 33 chr1 37797651 37798152 -159397280 - RLTR11A2 LTR ERVK 0 527 1 5 873 1177 217 46 16 chr1 37798190 37798495 -159396937 + L1_Rod LINE L1 2641 2954 -2893 5 873 532 188 9 3 chr1 37798496 37798612 -159396820 + B1_Mur4 SINE Alu 30 144 -6 5 873 1292 236 67 25 chr1 37798612 37798969 -159396463 + Lx9 LINE L1 5657 6028 -1616 5 873 522 0 0 0 chr1 37798988 37799046 -159396386 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 873 285 260 67 9 chr1 37799049 37799154 -159396278 - B3A SINE B2 -18 180 70 6 873 306 67 0 0 chr1 37800363 37800408 -159395024 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 873 989 222 162 20 chr1 37800801 37800926 -159394506 + Lx5 LINE L1 6762 6924 -126 6 873 189 0 0 0 chr1 37800926 37800947 -159394485 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 873 989 222 162 20 chr1 37800947 37801074 -159394358 + Lx5 LINE L1 6925 7050 0 6 873 726 173 19 0 chr1 37801078 37801240 -159394192 + GA-rich Low_complexity Low_complexity 3 167 0 6 873 201 39 0 0 chr1 37801585 37801611 -159393821 + (T)n Simple_repeat Simple_repeat 1 26 0 6 873 1809 118 109 0 chr1 37802153 37802474 -159392958 + ORR1B1 LTR MaLR 1 356 -38 6 873 292 236 28 0 chr1 37802464 37802536 -159392896 + RMER6A LTR ERVK 683 756 0 6 873 2234 94 3 0 chr1 37802856 37803174 -159392258 - ORR1A2 LTR MaLR -8 319 1 6 873 730 237 53 12 chr1 37803439 37803610 -159391822 + B3A SINE B2 3 180 -18 6 873 23 33 0 0 chr1 37803629 37803659 -159391773 + AT_rich Low_complexity Low_complexity 1 30 0 6 873 277 331 24 0 chr1 37803714 37803838 -159391594 + L1M4b LINE L1 1470 1596 -5308 6 873 683 221 0 0 chr1 37804009 37804145 -159391287 + RMER1B Other Other 45 180 -886 6 873 503 306 63 26 chr1 37804402 37804932 -159390500 + L1M4b LINE L1 2133 2792 -4542 6 873 955 311 48 12 chr1 37804971 37805385 -159390047 - L1M4 LINE L1 -1252 4894 4466 6 873 243 331 87 0 chr1 37805563 37805690 -159389742 - L2 LINE L2 -993 2426 2289 6 873 272 333 0 56 chr1 37807152 37807295 -159388137 - MLT1A LTR MaLR -180 194 60 6 873 183 42 0 0 chr1 37807442 37807466 -159387966 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 873 415 271 85 91 chr1 37807891 37808090 -159387342 + B3A SINE B2 19 216 0 6 873 352 213 80 0 chr1 37808103 37808178 -159387254 + B3 SINE B2 131 211 -5 6 873 530 242 42 0 chr1 37810372 37810492 -159384940 - B1F SINE Alu -7 142 18 6 873 189 0 0 0 chr1 37812270 37812291 -159383141 + (A)n Simple_repeat Simple_repeat 1 21 0 6 873 353 323 46 26 chr1 37812521 37812715 -159382717 + L1MD2 LINE L1 5775 5972 -387 6 873 3362 67 25 0 chr1 37813293 37813724 -159381708 + L1Md_F2 LINE L1 6138 6579 -3 6 873 240 214 66 22 chr1 37813760 37813851 -159381581 + L1MC3 LINE L1 5883 5977 -1808 6 873 243 264 75 94 chr1 37813931 37814198 -159381234 + L1MC4 LINE L1 2049 2310 -3905 6 873 183 129 0 0 chr1 37814599 37814630 -159380802 + (CAGTT)n Simple_repeat Simple_repeat 2 32 0 6 873 740 247 101 62 chr1 37814718 37814994 -159380438 + B4 SINE B4 3 289 -3 6 873 333 0 0 0 chr1 37815458 37815495 -159379937 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 873 1144 58 0 0 chr1 37815495 37815633 -159379799 - B1_Mus1 SINE Alu -9 139 2 6 873 331 327 142 28 chr1 37815884 37816312 -159379120 + L1MC4 LINE L1 2760 3236 -2978 6 873 880 221 67 16 chr1 37816345 37816538 -159378894 + B3 SINE B2 1 203 -13 6 873 524 228 7 0 chr1 37816539 37816684 -159378748 + (TA)n Simple_repeat Simple_repeat 2 147 0 6 873 231 241 165 44 chr1 37818078 37818169 -159377263 + PB1D7 SINE Alu 19 120 0 6 873 513 108 52 35 chr1 37818539 37818712 -159376720 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 873 234 45 68 0 chr1 37818726 37818770 -159376662 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 873 635 274 35 12 chr1 37818863 37819033 -159376399 - B4A SINE B4 -102 190 17 6 873 464 214 78 17 chr1 37821073 37821248 -159374184 - MTD LTR MaLR 0 419 196 6 873 35277 70 17 8 chr1 37821258 37827385 -159368047 - L1Md_F2 LINE L1 -1 6581 392 6 873 692 258 66 13 chr1 37827385 37827613 -159367819 - MTD LTR MaLR -175 244 5 6 873 1845 268 196 66 chr1 37827612 37828569 -159366863 + MTD-int LTR MaLR 174 1254 -4 6 873 638 284 65 10 chr1 37828573 37828772 -159366660 + MTD LTR MaLR 1 210 -209 6 873 1016 199 14 36 chr1 37828773 37828964 -159366468 + B3 SINE B2 2 193 -23 6 873 1615 201 56 17 chr1 37828964 37829324 -159366108 - ORR1D1 LTR MaLR 0 374 1 6 873 1016 199 14 36 chr1 37829324 37829351 -159366081 + B3 SINE B2 194 215 -1 6 873 583 227 127 34 chr1 37829371 37829576 -159365856 + MTD LTR MaLR 196 419 0 6 873 337 270 22 22 chr1 37829705 37829796 -159365636 - MER20 DNA MER1_type -96 123 33 6 873 393 297 0 9 chr1 37830083 37830195 -159365237 + Lx9 LINE L1 7208 7318 -326 6 873 574 253 53 33 chr1 37830213 37830321 -159365111 + Lx9 LINE L1 7368 7472 -172 6 873 306 125 0 0 chr1 37830321 37830369 -159365063 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 873 574 253 53 33 chr1 37830369 37830505 -159364927 + Lx9 LINE L1 7473 7616 -28 6 873 796 274 46 0 chr1 37830554 37830729 -159364703 + B3 SINE B2 1 183 -33 6 873 2891 30 3 0 chr1 37830729 37831063 -159364369 + IAPLTR1a_Mm LTR ERVK 1 335 -2 6 873 5174 61 6 15 chr1 37831063 37831726 -159363706 + IAPEz-int LTR ERVK 6 662 -5819 6 873 454 66 0 32 chr1 37831726 37831789 -159363643 + IAPEz-int LTR ERVK 1359 1419 -5062 6 873 1875 111 4 4 chr1 37831778 37832040 -159363392 + IAPEz-int LTR ERVK 2236 2497 -5183 6 873 967 72 24 0 chr1 37832035 37832160 -159363272 + IAPEz-int LTR ERVK 4783 4910 -2770 6 873 25218 13 2 2 chr1 37832160 37835116 -159360316 + IAPEz-int LTR ERVK 3525 6481 0 6 873 2691 25 0 0 chr1 37835116 37835442 -159359990 + IAPLTR1a_Mm LTR ERVK 1 326 -11 6 873 327 265 71 0 chr1 37835816 37835914 -159359518 - L1M4 LINE L1 -1630 4516 4412 6 873 428 280 33 59 chr1 37835918 37836070 -159359362 + RSINE1 SINE B4 12 159 -6 6 873 25 0 0 0 chr1 37836094 37836119 -159359313 + AT_rich Low_complexity Low_complexity 1 25 0 6 873 722 256 141 23 chr1 37836290 37836774 -159358658 - L1M4 LINE L1 -1835 4311 3771 6 873 890 251 56 52 chr1 37836846 37837115 -159358317 - B4A SINE B4 -1 291 22 6 873 6990 60 4 9 chr1 37837254 37838157 -159357275 + Lx3_Mus LINE L1 6103 7001 -8 6 873 232 152 0 0 chr1 37838181 37838227 -159357205 - L1M4 LINE L1 -2423 3723 3678 6 873 317 314 0 10 chr1 37838249 37838352 -159357080 + L1M4 LINE L1 3962 4063 -2083 6 873 365 291 38 16 chr1 37838422 37838607 -159356825 - L1M4 LINE L1 -2532 3614 3426 6 873 703 294 50 73 chr1 37838615 37839275 -159356157 + L1MD1 LINE L1 5299 5943 -299 6 873 515 282 61 35 chr1 37839357 37839585 -159355847 + L1MD1 LINE L1 5931 6164 -78 6 873 1650 150 100 3 chr1 37839640 37839981 -159355451 - ORR1D1 LTR MaLR 0 374 1 6 873 27 62 0 0 chr1 37840509 37840557 -159354875 + AT_rich Low_complexity Low_complexity 1 48 0 6 873 316 381 68 0 chr1 37841965 37842141 -159353291 - L2b LINE L2 -266 3109 2922 6 873 631 131 25 93 chr1 37842271 37842389 -159353043 - B1F2 SINE Alu 0 149 40 6 873 244 182 0 68 chr1 37842339 37842398 -159353034 - 4.5SRNA scRNA scRNA -10 84 30 6 873 396 0 0 0 chr1 37842542 37842586 -159352846 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 873 2229 157 71 24 chr1 37842586 37843149 -159352283 - RMER12 LTR ERVK 0 1572 456 6 873 35482 41 9 1 chr1 37843180 37848746 -159346686 - L1Md_F3 LINE L1 0 6584 974 6 873 247 57 0 0 chr1 37848750 37848785 -159346647 + L1Md_F3 LINE L1 950 984 -5632 6 873 2685 138 10 99 chr1 37848785 37849011 -159346421 - RMER12 LTR ERVK -854 468 288 6 873 1304 86 40 0 chr1 37849011 37849185 -159346247 - B2_Mm2 SINE B2 -14 181 1 6 873 2685 138 10 99 chr1 37849185 37849472 -159345960 - RMER12 LTR ERVK -1035 287 1 6 873 803 268 10 30 chr1 37850402 37850602 -159344830 - B3A SINE B2 -2 196 1 6 873 255 253 51 19 chr1 37850610 37850716 -159344716 + L1MEe LINE L1 1498 1644 -863 6 873 780 11 0 0 chr1 37851746 37851835 -159343597 + (TTC)n Simple_repeat Simple_repeat 3 91 0 6 873 650 100 10 0 chr1 37851837 37851937 -159343495 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 6 873 429 20 0 0 chr1 37851939 37851989 -159343443 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 873 440 265 216 0 chr1 37851989 37852091 -159343341 - B4A SINE B4 -26 266 143 6 873 370 279 87 69 chr1 37852855 37853028 -159342404 + L1M4c LINE L1 1176 1351 -5033 6 873 705 275 109 35 chr1 37853078 37853500 -159341932 + L1M4c LINE L1 3610 4062 -2320 6 873 303 236 147 13 chr1 37853571 37853721 -159341711 + L1MB8 LINE L1 6009 6178 0 6 873 252 261 239 0 chr1 37853745 37853833 -159341599 + PB1D9 SINE Alu 3 111 -9 6 873 1229 251 85 6 chr1 37853849 37854201 -159341231 + Lx8 LINE L1 6383 6762 -711 6 873 948 125 28 0 chr1 37854873 37854996 -159340436 + B1_Mur4 SINE Alu 1 127 -23 6 873 207 0 0 0 chr1 37854996 37855019 -159340413 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 873 948 125 28 0 chr1 37855019 37855039 -159340393 + B1_Mur4 SINE Alu 128 147 -3 6 873 860 203 91 10 chr1 37855098 37855297 -159340135 + B3 SINE B2 2 216 0 6 873 2999 138 52 54 chr1 37855350 37855544 -159339888 + RLTR20B2 LTR ERVK 1 183 -377 6 873 3266 43 2 5 chr1 37855544 37855941 -159339491 + MTA_Mm LTR MaLR 1 396 0 6 873 2999 138 52 54 chr1 37855941 37856216 -159339216 + RLTR20B2 LTR ERVK 184 466 -94 6 873 726 12 0 0 chr1 37856216 37856299 -159339133 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 873 189 0 0 0 chr1 37856299 37856319 -159339113 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 873 2999 138 52 54 chr1 37856319 37856406 -159339026 + RLTR20B2 LTR ERVK 467 557 -3 6 873 23 54 0 0 chr1 37857197 37857234 -159338198 + AT_rich Low_complexity Low_complexity 1 37 0 6 873 592 275 20 40 chr1 37857325 37857507 -159337925 + B3A SINE B2 2 179 -19 6 873 366 23 0 0 chr1 37857507 37857550 -159337882 + (CATA)n Simple_repeat Simple_repeat 4 46 0 6 873 592 275 20 40 chr1 37857550 37857568 -159337864 + B3A SINE B2 180 198 0 6 873 1154 91 89 17 chr1 37857578 37857757 -159337675 + B2_Mm2 SINE B2 1 192 -3 6 873 433 32 16 16 chr1 37857769 37857833 -159337599 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 873 449 234 50 80 chr1 37858014 37858047 -159337385 - B2_Mm2 SINE B2 -1 194 158 6 873 204 40 0 0 chr1 37858047 37858072 -159337360 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 873 641 234 50 80 chr1 37858072 37858238 -159337194 - B3A SINE B2 -38 160 1 6 873 22 0 0 0 chr1 37858326 37858348 -159337084 + AT_rich Low_complexity Low_complexity 1 22 0 6 873 2136 57 75 0 chr1 37858984 37859263 -159336169 - L1_Mus1 LINE L1 0 6567 6268 6 873 21 0 0 0 chr1 37859450 37859471 -159335961 + AT_rich Low_complexity Low_complexity 1 21 0 6 873 243 0 0 0 chr1 37859487 37859514 -159335918 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 873 329 241 310 0 chr1 37859528 37859644 -159335788 - B3 SINE B2 -64 152 1 6 873 293 294 22 45 chr1 37859789 37859804 -159335628 - ID SINE ID -135 89 3 6 873 341 274 14 14 chr1 37859804 37859878 -159335554 - ID4_ SINE ID -7 76 3 6 873 1164 69 7 0 chr1 37859915 37860060 -159335372 - B1_Mus2 SINE Alu -1 146 1 6 873 599 34 11 0 chr1 37860070 37860158 -159335274 - L1Md_F3 LINE L1 -14 6570 6482 6 873 553 259 175 25 chr1 37860282 37860468 -159334964 + B3A SINE B2 1 212 -4 6 873 369 0 0 0 chr1 37861016 37861057 -159334375 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 873 1136 212 130 61 chr1 37862635 37862854 -159332578 + ORR1D1 LTR MaLR 1 228 -146 6 873 216 0 0 0 chr1 37862854 37862878 -159332554 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 6 873 1136 212 130 61 chr1 37862878 37863004 -159332428 + ORR1D1 LTR MaLR 229 369 -5 6 873 685 286 51 15 chr1 37863072 37863267 -159332165 - ID_B1 SINE B4 -22 202 1 6 873 470 306 87 29 chr1 37864327 37864569 -159330863 + MTEa LTR MaLR 11 266 -113 7 873 442 312 150 56 chr1 37864411 37864805 -159330627 + MT2A LTR ERVL 101 531 -2 7 873 3715 264 79 33 chr1 37864894 37865172 -159330260 + ERVL-B4-int LTR ERVL 4302 4598 -1116 7 873 1028 59 13 13 chr1 37865172 37865327 -159330105 + (TTC)n Simple_repeat Simple_repeat 2 156 0 7 873 1163 68 7 0 chr1 37865329 37865476 -159329956 - B1_Mus1 SINE Alu 0 148 1 7 873 3715 264 79 33 chr1 37865476 37866543 -159328889 + ERVL-B4-int LTR ERVL 4599 5712 -2 7 873 692 299 141 36 chr1 37866545 37866934 -159328498 + MT2A LTR ERVL 1 430 -103 7 873 305 115 19 0 chr1 37867511 37867563 -159327869 - B3A SINE B2 -145 53 1 7 873 25 51 0 0 chr1 37867873 37867912 -159327520 + AT_rich Low_complexity Low_complexity 1 39 0 7 873 298 212 37 12 chr1 37868250 37868331 -159327101 + MERVL_2A-int LTR ERVL 5677 5759 -2 7 873 226 268 83 14 chr1 37868333 37868405 -159327027 + MTEb LTR MaLR 1 77 -302 7 873 21 0 0 0 chr1 37868459 37868480 -159326952 + AT_rich Low_complexity Low_complexity 1 21 0 7 873 465 19 0 0 chr1 37868483 37868537 -159326895 + (TATAA)n Simple_repeat Simple_repeat 4 57 0 7 873 929 157 116 0 chr1 37868543 37868759 -159326673 - Lx9 LINE L1 -36 7608 7368 7 873 547 244 184 17 chr1 37869203 37869382 -159326050 + B4A SINE B4 1 209 -83 7 873 787 255 5 35 chr1 37870004 37870207 -159325225 + B3A SINE B2 2 198 0 7 873 574 231 35 14 chr1 37870394 37870539 -159324893 - B1F2 SINE Alu 0 149 2 7 873 347 187 37 0 chr1 37870644 37870751 -159324681 + (CA)n Simple_repeat Simple_repeat 2 112 0 7 873 790 179 28 0 chr1 37871903 37872048 -159323384 + B1_Mur3 SINE Alu 1 149 0 7 873 297 320 110 16 chr1 37873068 37873195 -159322237 + MER5A DNA MER1_type 8 146 -43 7 873 188 287 135 83 chr1 37873239 37873372 -159322060 + MER5A DNA MER1_type 49 188 -1 7 873 1072 270 86 33 chr1 37873602 37873939 -159321493 + MTE2b LTR MaLR 20 374 -5 7 873 379 229 8 121 chr1 37874062 37874186 -159321246 - PB1D10 SINE Alu 0 117 8 7 873 319 161 0 0 chr1 37874346 37874402 -159321030 + Lx9 LINE L1 7350 7405 -239 7 873 255 229 0 0 chr1 37874435 37874496 -159320936 + (TATG)n Simple_repeat Simple_repeat 3 63 0 7 873 403 292 58 16 chr1 37874517 37874643 -159320789 - MTC-int LTR MaLR -435 823 707 7 873 812 175 0 6 chr1 37874700 37874861 -159320571 + (TA)n Simple_repeat Simple_repeat 1 160 0 7 873 301 296 40 72 chr1 37874876 37875127 -159320305 + L2 LINE L2 1909 2151 -1268 7 873 1000 180 128 8 chr1 37875375 37875632 -159319800 - Lx9 LINE L1 -7 7637 7350 7 873 808 188 14 0 chr1 37875663 37875807 -159319625 - B1_Mus1 SINE Alu 0 148 3 7 873 833 288 69 39 chr1 37876647 37876907 -159318525 + B4A SINE B4 2 269 -23 7 873 354 23 0 0 chr1 37876907 37876950 -159318482 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 873 846 212 0 0 chr1 37877445 37877591 -159317841 - B1_Mus1 SINE Alu -1 147 2 7 873 486 325 184 33 chr1 37877913 37878461 -159316971 + L1MEd LINE L1 615 1245 -4874 7 873 826 245 72 5 chr1 37878599 37878792 -159316640 + B3 SINE B2 1 206 -10 7 873 1496 248 144 14 chr1 37878896 37879408 -159316024 + Lx8 LINE L1 6750 7328 -145 7 109 3644 193 109 10 chr1 37879729 37880620 -159314812 + Lx9 LINE L1 6618 7596 -48 7 874 249 185 31 0 chr1 37880655 37880720 -159314712 + L1M5 LINE L1 5753 5819 -625 7 874 1152 108 195 0 chr1 37880798 37880983 -159314449 - URR1B DNA MER1_type 0 225 5 7 874 305 290 133 14 chr1 37881581 37881791 -159313641 + L1MD2 LINE L1 5907 6141 -218 7 874 364 280 106 0 chr1 37881792 37881924 -159313508 + L1MC4a LINE L1 7724 7869 -13 7 874 1803 147 14 0 chr1 37882044 37882337 -159313095 + MTC LTR MaLR 1 297 -124 7 874 540 216 14 94 chr1 37882339 37882477 -159312955 + B3 SINE B2 84 210 -6 7 874 1838 133 59 23 chr1 37882938 37883245 -159312187 - Lx4A LINE L1 -2 7056 6739 7 874 224 179 0 0 chr1 37883294 37883333 -159312099 + RSINE1 SINE B4 8 46 -119 7 874 6626 49 5 7 chr1 37883934 37884779 -159310653 + L1Md_F2 LINE L1 5739 6581 -1 7 874 396 318 105 28 chr1 37884827 37885008 -159310424 + B3 SINE B2 10 204 -12 7 874 422 214 71 0 chr1 37885020 37885104 -159310328 - PB1D9 SINE Alu -10 110 21 7 874 275 263 209 9 chr1 37885141 37885153 -159310279 + B4 SINE B4 80 217 -75 7 874 599 176 10 10 chr1 37885153 37885256 -159310176 + PB1D9 SINE Alu 9 111 -9 7 874 308 250 18 18 chr1 37885526 37885636 -159309796 + L1MA4 LINE L1 5285 5394 -770 7 874 323 24 48 0 chr1 37885773 37885815 -159309617 - MTB LTR MaLR 0 400 357 7 874 634 235 40 40 chr1 37885840 37886085 -159309347 + L1MA4 LINE L1 5696 5912 -388 7 874 288 0 0 0 chr1 37886232 37886264 -159309168 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 874 496 274 56 9 chr1 37886434 37886648 -159308784 + L1M3 LINE L1 5351 5574 -609 7 874 324 301 66 12 chr1 37887650 37887892 -159307540 + L1M3c LINE L1 1122 1376 -4765 7 874 3112 207 35 7 chr1 37888223 37888822 -159306610 - Lx6 LINE L1 -63 7397 6782 7 874 323 171 114 0 chr1 37889204 37889292 -159306140 + L1MA9 LINE L1 6214 6311 -1 7 874 21 0 0 0 chr1 37889292 37889313 -159306119 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 746 260 60 8 chr1 37889341 37889593 -159305839 + L1M5 LINE L1 5474 5738 -426 7 874 399 276 10 20 chr1 37891694 37891794 -159303638 + PB1D10 SINE Alu 1 99 -18 7 874 342 0 0 0 chr1 37892587 37892625 -159302807 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 874 3374 38 2 2 chr1 37892659 37893055 -159302377 - MTA_Mm LTR MaLR 0 396 1 7 874 2332 96 12 3 chr1 37893395 37893719 -159301713 + ORR1A2 LTR MaLR 1 327 0 7 874 11348 119 34 76 chr1 37893719 37895769 -159299663 + ORR1A2-int LTR MaLR 1 1963 0 7 874 2277 50 3 62 chr1 37895769 37896108 -159299324 + ORR1A2 LTR MaLR 1 319 -8 7 874 3616 171 21 67 chr1 37896160 37896742 -159298690 + Lx5 LINE L1 6334 6912 -138 7 874 1189 41 7 7 chr1 37896742 37896889 -159298543 - B1_Mm SINE Alu 0 147 1 7 874 3616 171 21 67 chr1 37896889 37897057 -159298375 + Lx5 LINE L1 6913 7050 0 7 874 490 171 0 12 chr1 37897105 37897188 -159298244 + ID4 SINE ID 2 83 0 7 874 529 253 68 104 chr1 37897524 37897687 -159297745 - ID_B1 SINE B4 -51 241 81 7 874 23 86 0 0 chr1 37898272 37898330 -159297102 + AT_rich Low_complexity Low_complexity 1 58 0 7 874 312 111 0 0 chr1 37898469 37898523 -159296909 + (CATA)n Simple_repeat Simple_repeat 4 57 0 7 874 1505 196 179 75 chr1 37900223 37900704 -159294728 + MT2A LTR ERVL 1 531 -2 7 874 222 252 80 44 chr1 37901295 37901452 -159293980 - L2b LINE L2 -60 3366 3252 7 874 721 159 79 101 chr1 37901519 37901708 -159293724 - B2_Mm2 SINE B2 -10 185 1 7 874 1850 144 75 83 chr1 37901790 37902177 -159293255 + ORR1C2 LTR MaLR 1 384 0 7 874 208 349 114 6 chr1 37902299 37902466 -159292966 - L2b LINE L2 -284 3142 2958 7 874 749 198 220 0 chr1 37902499 37902676 -159292756 + B3 SINE B2 1 216 0 7 874 506 243 9 0 chr1 37902866 37902977 -159292455 + Lx9 LINE L1 7362 7473 -171 7 874 186 43 0 0 chr1 37902984 37903007 -159292425 + (TATG)n Simple_repeat Simple_repeat 3 25 0 7 874 765 255 94 0 chr1 37903154 37903346 -159292086 + B3 SINE B2 1 210 -6 7 874 441 0 0 0 chr1 37903605 37903654 -159291778 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 874 479 177 31 10 chr1 37903895 37903992 -159291440 - PB1D10 SINE Alu -17 100 2 7 874 299 0 0 0 chr1 37904091 37904127 -159291305 + U2 snRNA snRNA 1 36 -152 7 874 285 325 133 6 chr1 37904132 37904290 -159291142 + MLT1F LTR MaLR 250 427 -121 7 874 22 35 0 0 chr1 37904910 37904939 -159290493 + AT_rich Low_complexity Low_complexity 1 29 0 7 874 327 262 63 36 chr1 37905665 37905776 -159289656 + PB1D10 SINE Alu 1 114 -3 7 874 22 0 0 0 chr1 37905899 37905921 -159289511 + AT_rich Low_complexity Low_complexity 1 22 0 7 874 885 177 0 41 chr1 37906643 37906790 -159288642 + B1_Mus1 SINE Alu 2 142 -6 7 874 232 208 54 98 chr1 37906827 37906939 -159288493 - RMER1C Other Other -3 1339 1233 7 874 373 314 9 0 chr1 37906998 37907103 -159288329 + PB1D10 SINE Alu 2 107 -10 7 874 428 186 0 0 chr1 37907194 37907280 -159288152 + Lx2 LINE L1 6911 6996 -1 7 874 578 249 174 32 chr1 37907538 37907791 -159287641 - B4A SINE B4 0 292 4 7 874 817 239 181 17 chr1 37907838 37908076 -159287356 - B4 SINE B4 -14 278 2 7 874 1738 294 99 17 chr1 37908330 37908350 -159287082 - MTE-int LTR MaLR -363 1217 1198 7 874 252 0 0 0 chr1 37908350 37908378 -159287054 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 874 1738 296 97 16 chr1 37908378 37909165 -159286267 - MTE-int LTR MaLR -383 1197 316 7 874 238 288 27 14 chr1 37909153 37909227 -159286205 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 7 874 447 162 12 0 chr1 37909234 37909314 -159286118 - MTE-int LTR MaLR -1200 380 300 7 874 443 283 112 25 chr1 37909306 37909506 -159285926 - ORR1E LTR MaLR -151 219 3 7 874 520 297 108 5 chr1 37909528 37909714 -159285718 - L1MDa LINE L1 -5848 785 581 7 874 658 275 19 51 chr1 37909931 37910045 -159285387 + Lx6 LINE L1 5875 5980 -1480 7 874 465 62 0 0 chr1 37910045 37910110 -159285322 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 874 658 275 19 51 chr1 37910110 37910252 -159285180 + Lx6 LINE L1 5981 6122 -1338 7 874 1462 219 83 10 chr1 37910252 37910821 -159284611 + Lx6 LINE L1 6756 7456 -4 7 874 965 197 20 10 chr1 37910942 37911142 -159284290 - ID_B1 SINE B4 -13 211 10 7 874 1327 87 66 0 chr1 37911391 37911574 -159283858 + B2_Mm2 SINE B2 1 195 0 7 874 326 313 40 0 chr1 37911587 37911686 -159283746 + PB1D7 SINE Alu 2 104 -16 7 874 799 192 0 7 chr1 37911772 37911919 -159283513 + B1_Mur4 SINE Alu 1 146 -4 7 874 21 57 0 0 chr1 37912043 37912078 -159283354 + AT_rich Low_complexity Low_complexity 1 35 0 7 874 214 301 161 50 chr1 37912387 37912548 -159282884 + B3A SINE B2 20 198 0 8 874 2421 192 11 11 chr1 37912562 37913031 -159282401 + Lx9 LINE L1 6806 7274 -370 8 874 234 292 86 49 chr1 37913420 37913582 -159281850 - B4 SINE B4 0 292 125 8 874 1259 256 116 16 chr1 37913612 37913907 -159281525 + MTD LTR MaLR 1 331 -88 8 874 1598 202 61 28 chr1 37913907 37914269 -159281163 + ORR1D1 LTR MaLR 1 374 0 8 874 1259 256 116 16 chr1 37914269 37914354 -159281078 + MTD LTR MaLR 332 418 -1 8 874 21 0 0 0 chr1 37914954 37914975 -159280457 + AT_rich Low_complexity Low_complexity 1 21 0 8 874 292 139 68 19 chr1 37915066 37915168 -159280264 + ORR1B2 LTR MaLR 1 140 -227 8 874 1274 115 29 5 chr1 37915609 37915819 -159279613 + ORR1B2 LTR MaLR 140 354 -13 8 874 7213 172 71 11 chr1 37915829 37917252 -159278180 + ORR1B2-int LTR MaLR 2 1509 0 8 874 1650 155 76 6 chr1 37917258 37917588 -159277844 + ORR1B2 LTR MaLR 7 359 -8 8 874 252 314 188 14 chr1 37917622 37917829 -159277603 + L2a LINE L2 2684 2926 -493 8 874 245 298 0 0 chr1 37917993 37918050 -159277382 + ID SINE ID 19 75 -149 8 874 406 283 0 0 chr1 37918176 37918282 -159277150 + MLT1A0 LTR MaLR 260 365 0 8 874 197 359 28 0 chr1 37918454 37918560 -159276872 + L2a LINE L2 3236 3344 -82 8 874 550 311 27 13 chr1 37919297 37919447 -159275985 + RSINE1 SINE B4 1 152 -13 8 874 231 36 0 0 chr1 37919517 37919545 -159275887 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 874 247 167 241 0 chr1 37920183 37920237 -159275195 + L1ME3B LINE L1 5746 5812 -367 8 874 303 250 105 9 chr1 37920290 37920395 -159275037 + L1ME3B LINE L1 5897 6011 -229 8 874 258 233 0 72 chr1 37921682 37921779 -159273653 + C-rich Low_complexity Low_complexity 6 95 0 8 874 1212 264 125 29 chr1 37923020 37923641 -159271791 - Lx7 LINE L1 -1785 5911 5261 8 874 623 180 43 0 chr1 37923788 37923949 -159271483 + GA-rich Low_complexity Low_complexity 3 170 0 8 874 183 42 0 0 chr1 37923961 37923985 -159271447 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 8 874 1147 155 69 15 chr1 37923987 37924190 -159271242 + B3 SINE B2 1 214 -2 8 874 934 150 0 0 chr1 37924278 37924411 -159271021 + B1_Mur4 SINE Alu 2 134 -16 8 874 343 143 13 25 chr1 37924412 37924491 -159270941 + (TATG)n Simple_repeat Simple_repeat 2 79 0 8 874 225 0 0 0 chr1 37924491 37924516 -159270916 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 874 243 247 0 64 chr1 37925006 37925084 -159270348 - ID4_ SINE ID -3 80 8 8 874 494 225 43 21 chr1 37925324 37925465 -159269967 - B3 SINE B2 0 216 73 8 874 728 258 102 38 chr1 37925461 37925727 -159269705 + MTEa LTR MaLR 93 375 -4 8 874 458 273 41 16 chr1 37926448 37926571 -159268861 + RSINE1 SINE B4 2 127 -38 8 874 3699 90 121 2 chr1 37927109 37927631 -159267801 + MT2B2 LTR ERVL 1 584 0 8 874 279 0 0 0 chr1 37927638 37927669 -159267763 + (CATA)n Simple_repeat Simple_repeat 4 34 0 8 874 577 175 53 0 chr1 37927739 37927853 -159267579 + B1_Mur1 SINE Alu 19 138 -11 8 874 984 132 0 0 chr1 37927886 37928022 -159267410 + B1_Mur3 SINE Alu 1 136 -13 8 874 231 45 43 22 chr1 37928223 37928269 -159267163 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 8 874 278 342 23 8 chr1 37928604 37928745 -159266687 + MLT1H1 LTR MaLR 1 144 -447 8 874 326 262 130 30 chr1 37929730 37929899 -159265533 + Lx7 LINE L1 7227 7412 -284 8 874 348 136 99 72 chr1 37930119 37930133 -159265299 + MT2B LTR ERVL 166 278 -322 8 874 500 146 94 0 chr1 37930133 37930229 -159265203 + B1_Mur4 SINE Alu 19 123 -27 8 874 438 272 60 7 chr1 37930956 37931096 -159264336 + B4A SINE B4 78 280 -12 8 874 1849 142 113 16 chr1 37933182 37933554 -159261878 - MTD LTR MaLR -7 412 5 8 874 587 239 15 0 chr1 37933555 37933685 -159261747 - B1_Mur1 SINE Alu -15 134 3 8 874 969 255 87 32 chr1 37933934 37934303 -159261129 + RLTR12B LTR ERVK 131 519 -9 8 874 368 269 46 9 chr1 37934349 37934458 -159260974 + PB1D7 SINE Alu 1 113 -7 8 874 370 289 11 201 chr1 37934988 37935252 -159260180 - ID_B1 SINE B4 -8 216 3 8 874 1496 73 5 15 chr1 37935309 37935504 -159259928 - B2_Mm2 SINE B2 -2 193 1 8 874 294 215 96 11 chr1 37935826 37935920 -159259512 + MLT1A1 LTR MaLR 1 102 -306 8 874 1060 216 238 29 chr1 37936781 37937166 -159258266 + MT2A LTR ERVL 1 526 -28 8 874 342 0 0 0 chr1 37937166 37937204 -159258228 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 8 874 232 277 226 34 chr1 37937204 37937232 -159258200 + MT2A LTR ERVL 527 554 0 8 874 232 276 0 0 chr1 37938108 37938166 -159257266 - B1F1 SINE Alu -91 58 1 8 874 554 294 164 35 chr1 37939079 37939365 -159256067 - MER2 DNA MER2_type -22 323 1 8 874 33 73 0 0 chr1 37939918 37939986 -159255446 + AT_rich Low_complexity Low_complexity 1 68 0 8 874 591 269 147 11 chr1 37939986 37940170 -159255262 - B3 SINE B2 -6 210 2 8 874 791 190 35 0 chr1 37940201 37940343 -159255089 + B1_Mus1 SINE Alu 1 147 -1 8 874 198 167 0 0 chr1 37940345 37940381 -159255051 + GA-rich Low_complexity Low_complexity 3 38 0 8 874 2099 105 47 9 chr1 37940385 37940702 -159254730 + ORR1A4 LTR MaLR 1 329 0 8 874 581 248 14 14 chr1 37940885 37941024 -159254408 - ID_B1 SINE B4 -8 216 78 8 874 272 250 0 13 chr1 37941025 37941102 -159254330 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 8 874 247 204 0 0 chr1 37941107 37941151 -159254281 - ID4_ SINE ID -9 74 31 8 874 279 0 0 0 chr1 37942663 37942694 -159252738 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 874 306 305 38 0 chr1 37942865 37942970 -159252462 - L1MC4a LINE L1 -362 7520 7412 8 874 1256 34 0 0 chr1 37942993 37943140 -159252292 - B1_Mus1 SINE Alu 0 148 2 8 874 367 219 58 116 chr1 37943381 37943536 -159251896 - B1F1 SINE Alu -2 147 2 8 874 639 239 279 17 chr1 37943538 37943946 -159251486 - L1MC4a LINE L1 -1000 6882 6368 8 874 777 263 82 0 chr1 37944002 37944196 -159251236 - ID_B1 SINE B4 -10 214 5 8 874 311 273 56 35 chr1 37944236 37944380 -159251052 - L1MC4a LINE L1 -1775 6107 5961 8 874 2415 119 0 3 chr1 37944616 37944962 -159250470 + ORR1A1 LTR MaLR 1 345 -1 8 874 492 136 0 0 chr1 37945114 37945195 -159250237 - MTC LTR MaLR -333 88 8 8 874 2666 119 18 51 chr1 37945251 37945331 -159250101 + MTC LTR MaLR 2 78 -343 8 874 621 185 116 16 chr1 37945331 37945452 -159249980 + B1_Mur3 SINE Alu 1 133 -16 8 874 2666 119 18 51 chr1 37945452 37945805 -159249627 + MTC LTR MaLR 79 421 0 8 874 207 0 0 0 chr1 37945823 37945846 -159249586 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 874 2067 255 103 35 chr1 37945857 37945933 -159249499 + Lx8 LINE L1 6200 6267 -1206 8 874 258 32 0 0 chr1 37945933 37945964 -159249468 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 8 874 2067 255 103 35 chr1 37945964 37946569 -159248863 + Lx8 LINE L1 6268 6927 -546 8 874 21 0 0 0 chr1 37947633 37947654 -159247778 + AT_rich Low_complexity Low_complexity 1 21 0 8 874 1010 174 43 34 chr1 37948195 37948403 -159247029 - B3 SINE B2 -6 210 1 8 874 282 314 0 0 chr1 37948983 37949053 -159246379 - ID4 SINE ID -13 70 1 8 874 506 269 82 88 chr1 37949076 37949430 -159246002 - L1MC2 LINE L1 0 7785 7434 8 874 682 108 7 139 chr1 37949467 37949618 -159245814 - MTC LTR MaLR -6 415 285 8 874 218 136 0 43 chr1 37949766 37949812 -159245620 - PB1D9 SINE Alu 0 120 77 8 874 320 275 237 12 chr1 37950044 37950292 -159245140 - L1MC2 LINE L1 -1059 6983 6626 8 874 213 224 20 20 chr1 37950347 37950397 -159245035 - B1F1 SINE Alu -90 59 10 8 874 213 239 70 0 chr1 37950419 37950490 -159244942 + MIR SINE MIR 74 149 -59 8 874 548 215 221 0 chr1 37950884 37951047 -159244385 - ID_B1 SINE B4 -21 203 5 8 874 210 250 147 0 chr1 37951161 37951229 -159244203 - ID4_ SINE ID -4 79 2 8 874 32 67 0 0 chr1 37952269 37952329 -159243103 + AT_rich Low_complexity Low_complexity 1 60 0 8 874 305 281 23 69 chr1 37952370 37952500 -159242932 - RSINE1 SINE B4 -10 155 32 8 874 620 300 173 13 chr1 37952971 37953346 -159242086 - L1MC2 LINE L1 -9 6335 5901 8 874 1318 80 11 11 chr1 37953553 37953731 -159241701 + B2_Mm1t SINE B2 2 179 -14 8 874 430 139 153 15 chr1 37953778 37953909 -159241523 + B2_Mm2 SINE B2 47 195 0 8 874 959 213 35 0 chr1 37954026 37954228 -159241204 - B3 SINE B2 -3 213 5 8 874 228 306 122 16 chr1 37955386 37955509 -159239923 - MLT1A1 LTR MaLR -5 403 268 8 874 584 155 54 18 chr1 37955613 37955725 -159239707 + B1_Mur1 SINE Alu 25 140 -9 8 874 717 251 71 14 chr1 37955737 37955947 -159239485 - Lx9 LINE L1 -610 7034 6813 8 874 1300 20 0 0 chr1 37956050 37956197 -159239235 + B1_Mm SINE Alu 1 147 0 8 874 954 261 60 51 chr1 37956214 37956565 -159238867 + Lx9 LINE L1 7120 7473 -171 8 874 1628 131 67 96 chr1 37957271 37957627 -159237805 + ORR1B1 LTR MaLR 41 386 -8 8 874 480 291 99 50 chr1 37957636 37957857 -159237575 + B4 SINE B4 51 282 -10 8 874 1351 101 11 0 chr1 37957891 37958079 -159237353 - B2_Mm1t SINE B2 -2 191 2 8 874 1431 74 16 5 chr1 37958079 37958269 -159237163 - B2_Mm2 SINE B2 -1 194 3 8 874 306 0 0 0 chr1 37958292 37958326 -159237106 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 8 874 1403 74 26 5 chr1 37958455 37958646 -159236786 + B2_Mm2 SINE B2 1 195 0 8 874 492 18 0 0 chr1 37958662 37958719 -159236713 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 874 250 295 105 0 chr1 37958731 37958867 -159236565 - B3 SINE B2 -31 167 16 8 874 325 294 26 110 chr1 37959601 37959659 -159235773 - MLT1E1A LTR MaLR -72 608 558 8 874 1370 165 5 0 chr1 37959659 37959883 -159235549 - URR1B DNA MER1_type 0 225 1 8 874 325 302 24 105 chr1 37959883 37960039 -159235393 - MLT1E1A LTR MaLR -123 557 382 8 874 1381 94 11 0 chr1 37961569 37961760 -159233672 + B2_Mm1t SINE B2 1 193 0 8 874 277 326 0 11 chr1 37962232 37962325 -159233107 + PB1D10 SINE Alu 6 97 -20 8 874 264 301 75 37 chr1 37962538 37962645 -159232787 - ORR1E LTR MaLR -248 111 1 8 874 450 256 1 3 chr1 37963758 37963865 -159231567 + PB1D7 SINE Alu 5 112 -8 8 874 189 107 0 0 chr1 37964231 37964259 -159231173 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 9 874 675 99 0 0 chr1 37964704 37964805 -159230627 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 9 874 187 95 0 67 chr1 37965211 37965256 -159230176 + A-rich Low_complexity Low_complexity 5 46 0 9 874 210 175 0 24 chr1 37966053 37966094 -159229338 + GA-rich Low_complexity Low_complexity 6 45 0 9 874 311 248 197 8 chr1 37966181 37966303 -159229129 + B1F1 SINE Alu 3 147 -2 9 874 21 57 0 0 chr1 37966465 37966500 -159228932 + AT_rich Low_complexity Low_complexity 1 35 0 9 874 378 244 8 70 chr1 37967428 37967493 -159227939 - PB1D9 SINE Alu 0 120 63 9 874 1044 120 170 40 chr1 37967493 37967693 -159227739 - URR1A DNA MER1_type 0 226 1 9 874 378 244 8 70 chr1 37967693 37967755 -159227677 - PB1D9 SINE Alu -58 62 1 9 874 333 0 0 0 chr1 37968103 37968140 -159227292 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 874 180 0 0 0 chr1 37968327 37968347 -159227085 + (T)n Simple_repeat Simple_repeat 1 20 0 9 874 225 300 25 0 chr1 37968383 37968398 -159227034 - ID4 SINE ID 0 83 7 9 874 233 283 0 0 chr1 37968398 37968458 -159226974 - tRNA-Ala-GCA tRNA tRNA -14 61 2 9 874 737 258 18 70 chr1 37968666 37968950 -159226482 + RLTR11B LTR ERVK 1 269 -184 9 874 605 199 27 14 chr1 37969026 37969174 -159226258 + RLTR11B LTR ERVK 285 434 -19 9 874 691 227 12 115 chr1 37969629 37969858 -159225574 + ID_B1 SINE B4 6 213 -11 9 874 1172 56 7 0 chr1 37969858 37970002 -159225430 + B1_Mm SINE Alu 3 147 0 9 874 691 227 12 115 chr1 37970002 37970016 -159225416 + ID_B1 SINE B4 214 224 0 9 874 215 140 39 20 chr1 37970046 37970097 -159225335 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 874 180 283 0 48 chr1 37970387 37970450 -159224982 + MER5A DNA MER1_type 47 106 -83 9 874 428 271 119 0 chr1 37970846 37970964 -159224468 - B1F SINE Alu -17 132 1 9 874 958 146 8 4 chr1 37970972 37971219 -159224213 + CT-rich Low_complexity Low_complexity 1 247 0 9 874 486 185 107 16 chr1 37971271 37971392 -159224040 + B3 SINE B2 80 211 -5 9 874 573 55 0 0 chr1 37971525 37971598 -159223834 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 9 874 1150 61 7 13 chr1 37971623 37971772 -159223660 - B1_Mus1 SINE Alu 0 148 1 9 874 958 99 41 34 chr1 37972105 37972251 -159223181 + B1_Mur4 SINE Alu 4 150 0 9 874 293 186 0 14 chr1 37972363 37972434 -159222998 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 874 690 259 55 122 chr1 37973870 37974182 -159221250 - B4A SINE B4 0 292 2 9 874 429 307 97 0 chr1 37975159 37975369 -159220063 - MIRb SINE MIR -10 252 21 9 874 282 328 50 8 chr1 37975778 37975898 -159219534 - MamRep1879 DNA hAT? -1 215 91 9 874 993 141 223 0 chr1 37976531 37976715 -159218717 + URR1B DNA MER1_type 1 225 0 9 874 2426 180 157 18 chr1 37977241 37977760 -159217672 + Lx9 LINE L1 6856 7449 -195 9 874 3002 71 38 13 chr1 37977760 37978157 -159217275 + MTB_Mm LTR MaLR 1 407 0 9 874 2426 180 157 18 chr1 37978157 37978203 -159217229 + Lx9 LINE L1 7450 7500 -144 9 874 315 0 0 0 chr1 37978248 37978283 -159217149 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 874 609 271 0 15 chr1 37978849 37978984 -159216448 + ID_B1 SINE B4 92 224 0 9 874 376 250 111 37 chr1 37979218 37979380 -159216052 + MIRc SINE MIR 90 263 -5 9 874 365 266 15 52 chr1 37980483 37980618 -159214814 + L1M5 LINE L1 5616 5745 -419 9 874 963 208 0 20 chr1 37981513 37981714 -159213718 - B3 SINE B2 -19 197 1 9 874 309 109 0 0 chr1 37981721 37981767 -159213665 + (CAT)n Simple_repeat Simple_repeat 2 47 0 9 874 21 36 0 0 chr1 37981838 37981866 -159213566 + AT_rich Low_complexity Low_complexity 1 28 0 9 874 370 308 39 83 chr1 37981888 37982044 -159213388 - RSINE1 SINE B4 -1 164 16 9 874 219 69 0 0 chr1 37982946 37982975 -159212457 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 9 874 1191 55 14 0 chr1 37983205 37983350 -159212082 - B1_Mus1 SINE Alu 0 148 2 9 874 720 233 127 0 chr1 37983679 37983868 -159211564 + B3 SINE B2 1 213 -3 9 874 183 129 0 0 chr1 37985898 37985929 -159209503 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 874 273 331 8 0 chr1 37985947 37986071 -159209361 + (CA)n Simple_repeat Simple_repeat 1 125 0 9 874 306 167 0 0 chr1 37986088 37986148 -159209284 + CT-rich Low_complexity Low_complexity 1 60 0 9 874 734 168 14 7 chr1 37986148 37986286 -159209146 - B1_Mur1 SINE Alu -1 148 10 9 874 431 175 160 4 chr1 37986289 37986443 -159208989 - MTD LTR MaLR -26 393 178 9 874 836 195 0 20 chr1 37986450 37986602 -159208830 - B1_Mur3 SINE Alu 0 149 1 9 874 650 245 13 19 chr1 37986625 37986779 -159208653 - B3 SINE B2 0 216 64 9 874 246 208 0 0 chr1 37986839 37986892 -159208540 + GA-rich Low_complexity Low_complexity 1 53 0 9 874 645 241 29 92 chr1 37986899 37987105 -159208327 + B3A SINE B2 3 195 -3 9 874 623 82 0 83 chr1 37987172 37987292 -159208140 + B1_Mur3 SINE Alu 40 149 0 9 874 1218 34 7 0 chr1 37987308 37987454 -159207978 + B1_Mm SINE Alu 1 147 0 9 874 198 0 0 0 chr1 37987460 37987482 -159207950 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 9 874 5722 54 3 6 chr1 37987795 37988516 -159206916 + L1Md_F2 LINE L1 5864 6582 0 9 874 212 143 0 23 chr1 37989158 37989201 -159206231 + CT-rich Low_complexity Low_complexity 4 45 0 9 874 460 301 90 62 chr1 37989314 37989491 -159205941 - B3A SINE B2 -15 183 2 9 874 556 280 0 0 chr1 37989741 37989866 -159205566 - ID_B1 SINE B4 -1 223 99 9 874 500 16 0 0 chr1 37990416 37990476 -159204956 + RMER17A2 LTR ERVK 209 268 -638 9 874 1580 38 5 32 chr1 37990476 37990695 -159204737 - MTA_Mm LTR MaLR 0 396 184 9 874 342 0 0 0 chr1 37990696 37990734 -159204698 + (TC)n Simple_repeat Simple_repeat 2 39 0 9 874 738 67 10 0 chr1 37990734 37990838 -159204594 - B1_Mus2 SINE Alu -1 146 42 9 874 253 186 55 78 chr1 37990754 37990882 -159204550 - RLTR25B LTR ERVK -507 521 397 9 874 234 0 0 158 chr1 37990883 37990997 -159204435 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 9 874 355 102 0 33 chr1 37990998 37991059 -159204373 - B1_Mus2 SINE Alu -88 59 1 9 874 1461 36 5 0 chr1 37991059 37991249 -159204183 - MTA_Mm LTR MaLR -205 191 1 9 874 380 131 168 8 chr1 37991249 37991355 -159204077 + RMER17A2 LTR ERVK 279 407 -551 9 874 1408 76 16 21 chr1 37991791 37991980 -159203452 + B2_Mm2 SINE B2 1 188 -7 9 874 30 0 0 44 chr1 37991984 37992008 -159203424 + AT_rich Low_complexity Low_complexity 1 23 0 9 874 1211 27 7 13 chr1 37992008 37992157 -159203275 + B1_Mus1 SINE Alu 1 148 0 9 874 30 0 0 44 chr1 37992157 37992177 -159203255 + AT_rich Low_complexity Low_complexity 1 20 0 9 874 536 257 192 16 chr1 37992614 37992878 -159202554 + MLT1A0 LTR MaLR 1 309 -65 9 874 32310 116 13 17 chr1 37993707 38000000 -159195432 - Lx2B LINE L1 -6 6994 719 9 874 307 222 261 12 chr1 38000000 38000112 -159195320 - L1Md_F LINE L1 -6353 166 85 1 874 591 15 0 0 chr1 38001269 38001337 -159194095 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 874 1075 240 47 108 chr1 38001617 38002042 -159193390 - RMER10A LTR ERVL -42 400 2 3 874 1023 221 14 14 chr1 38003093 38003309 -159192123 + B3 SINE B2 1 216 0 4 874 28 0 0 0 chr1 38003317 38003345 -159192087 + AT_rich Low_complexity Low_complexity 1 28 0 5 874 705 284 24 19 chr1 38004277 38004489 -159190943 + L1MB1 LINE L1 5449 5661 -510 6 874 441 36 0 0 chr1 38004493 38004548 -159190884 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 874 643 310 44 56 chr1 38004551 38004964 -159190468 + L1MB1 LINE L1 5739 6146 -22 6 874 378 152 0 0 chr1 38006219 38006311 -159189121 + CT-rich Low_complexity Low_complexity 2 93 0 8 874 360 333 194 81 chr1 38006353 38006611 -159188821 - B4A SINE B4 -3 289 3 9 874 267 133 0 0 chr1 38008162 38008207 -159187225 + (TTAA)n Simple_repeat Simple_repeat 4 48 0 1 874 1675 158 73 10 chr1 38008223 38008523 -159186909 + ORR1A2 LTR MaLR 1 319 -8 1 874 432 282 78 0 chr1 38008520 38008623 -159186809 - ID_B1 SINE B4 -11 213 103 1 874 296 314 118 47 chr1 38008623 38008647 -159186785 - B1F SINE Alu -11 138 3 1 874 1371 276 30 19 chr1 38008949 38009315 -159186117 + MTEa LTR MaLR 3 372 -7 1 874 369 209 64 37 chr1 38009843 38009952 -159185480 + PB1D9 SINE Alu 4 115 -5 1 874 291 247 139 12 chr1 38010022 38010108 -159185324 + PB1D10 SINE Alu 1 97 -20 1 874 405 0 0 0 chr1 38010443 38010488 -159184944 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 874 314 98 0 19 chr1 38010488 38010540 -159184892 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 1 875 186 43 0 0 chr1 38010981 38011004 -159184428 + (A)n Simple_repeat Simple_repeat 1 23 0 1 875 1271 241 52 64 chr1 38011036 38011440 -159183992 - MTD LTR MaLR -2 417 19 2 875 1206 61 7 0 chr1 38012583 38012730 -159182702 - B1_Mus1 SINE Alu 0 148 1 2 875 426 284 74 7 chr1 38012937 38013072 -159182360 - B1F2 SINE Alu -5 144 1 2 875 402 238 19 38 chr1 38013076 38013181 -159182251 - PB1D10 SINE Alu -7 110 8 2 875 430 219 30 35 chr1 38014899 38015134 -159180298 + GA-rich Low_complexity Low_complexity 1 233 0 2 875 932 146 7 20 chr1 38015722 38015869 -159179563 - B1_Mm SINE Alu 0 147 3 2 875 471 223 70 55 chr1 38015966 38016174 -159179258 - MTD LTR MaLR -4 415 132 2 875 513 252 8 0 chr1 38016762 38016881 -159178551 + PB1 SINE Alu 1 120 -7 2 875 721 148 20 7 chr1 38016902 38017052 -159178380 + G-rich Low_complexity Low_complexity 4 155 0 2 875 263 313 99 20 chr1 38017062 38017163 -159178269 + PB1D10 SINE Alu 2 110 -7 2 875 361 169 30 30 chr1 38017546 38017613 -159177819 - B1F2 SINE Alu -81 68 2 3 875 351 165 35 0 chr1 38017757 38017842 -159177590 + GA-rich Low_complexity Low_complexity 4 91 0 3 875 1371 74 11 3 chr1 38017845 38018196 -159177236 + (GGAGA)n Simple_repeat Simple_repeat 1 353 0 3 875 1389 89 16 0 chr1 38018658 38018848 -159176584 + B2_Mm2 SINE B2 1 193 -2 3 875 629 142 75 0 chr1 38018874 38018980 -159176452 + PB1D9 SINE Alu 1 114 -6 3 875 1102 115 97 6 chr1 38018990 38019165 -159176267 + B2_Mm2 SINE B2 2 192 -3 3 875 290 298 16 58 chr1 38019563 38019684 -159175748 + MER58A DNA MER1_type 52 167 -57 3 875 247 369 8 24 chr1 38019993 38020118 -159175314 - L2b LINE L2 -1 3374 3252 3 875 328 331 95 40 chr1 38020182 38020560 -159174872 - L2b LINE L2 -1042 2377 1979 3 875 445 358 85 63 chr1 38020737 38021194 -159174238 - MLT1L LTR MaLR -70 540 74 3 875 456 177 22 49 chr1 38021645 38021829 -159173603 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 875 516 167 198 85 chr1 38022457 38022634 -159172798 - B3A SINE B2 0 198 2 4 875 486 75 0 0 chr1 38023181 38023248 -159172184 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 875 514 290 27 27 chr1 38023252 38023401 -159172031 - RSINE1 SINE B4 -14 151 3 4 875 453 21 0 87 chr1 38023713 38023817 -159171615 + (TTCTC)n Simple_repeat Simple_repeat 4 98 0 4 875 892 114 8 8 chr1 38023823 38023956 -159171476 - B1_Mur4 SINE Alu 0 150 18 4 875 359 297 14 48 chr1 38023830 38023975 -159171457 - B4A SINE B4 -71 221 82 4 875 266 0 0 29 chr1 38024015 38024050 -159171382 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 875 507 241 28 0 chr1 38024096 38024204 -159171228 - PB1D7 SINE Alu -9 111 1 4 875 1412 60 22 0 chr1 38024494 38024678 -159170754 + B2_Mm1t SINE B2 1 188 -5 4 875 944 285 44 44 chr1 38024848 38025102 -159170330 + Lx8 LINE L1 7096 7349 -124 4 875 1213 105 66 0 chr1 38025102 38025259 -159170173 + B2_Mm1a SINE B2 1 158 -35 5 875 360 0 0 0 chr1 38025259 38025299 -159170133 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 5 875 1213 105 66 0 chr1 38025299 38025322 -159170110 + B2_Mm1a SINE B2 159 192 -1 5 875 944 285 44 44 chr1 38025322 38025408 -159170024 + Lx8 LINE L1 7350 7436 -37 4 875 22 0 0 0 chr1 38025408 38025430 -159170002 + AT_rich Low_complexity Low_complexity 1 22 0 5 875 251 368 0 22 chr1 38025534 38025623 -159169809 - L2c LINE L2 -12 3375 3289 5 875 294 200 15 44 chr1 38026610 38026678 -159168754 - MLT2C2 LTR ERVL 0 559 494 5 875 336 243 7 45 chr1 38026708 38026805 -159168627 - PB1D10 SINE Alu -36 112 23 5 875 252 290 59 20 chr1 38026987 38027089 -159168343 - MLT2B2 LTR ERVL -365 150 45 5 875 271 212 27 29 chr1 38027559 38027639 -159167793 - MTE2a LTR MaLR -14 365 287 5 875 482 335 29 14 chr1 38028079 38028288 -159167144 - LTR52-int LTR ERVL -3073 483 272 5 875 250 278 122 38 chr1 38028491 38028622 -159166810 - LTR52 LTR ERVL -11 410 269 5 875 420 341 112 46 chr1 38029024 38029347 -159166085 + Lx8 LINE L1 6951 7294 -179 5 875 305 111 32 0 chr1 38029382 38029445 -159165987 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 6 875 351 0 0 0 chr1 38029571 38029610 -159165822 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 875 186 103 0 0 chr1 38029653 38029682 -159165750 + (TATG)n Simple_repeat Simple_repeat 2 30 0 6 875 266 312 18 0 chr1 38029721 38029830 -159165602 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 6 875 351 282 117 47 chr1 38029878 38030049 -159165383 + L1ME4a LINE L1 5936 6118 -6 6 875 1204 78 16 53 chr1 38030444 38030634 -159164798 - B2_Mm2 SINE B2 -11 184 2 6 875 898 276 117 8 chr1 38030782 38031048 -159164384 + 7SK RNA RNA 35 329 -2 6 875 226 278 125 0 chr1 38031305 38031377 -159164055 - PB1D9 SINE Alu -37 83 3 6 875 2614 158 63 28 chr1 38031455 38031964 -159163468 + RLTR11A LTR ERVK 1 527 -1 6 875 1274 288 84 86 chr1 38031995 38032655 -159162777 - Lx9 LINE L1 -25 7619 6938 6 875 1067 169 0 26 chr1 38032655 38032849 -159162583 + B2_Mm2 SINE B2 2 190 -5 7 875 1274 288 84 86 chr1 38032849 38032924 -159162508 - Lx9 LINE L1 -707 6937 6885 6 875 325 256 96 51 chr1 38032925 38033097 -159162335 - RLTR13D6 LTR ERVK -39 863 667 7 875 3352 32 25 0 chr1 38033301 38033702 -159161730 - RLTR10A LTR ERVK 0 411 1 7 875 980 271 110 0 chr1 38034277 38034576 -159160856 - Lx9 LINE L1 -758 6886 6555 6 875 458 222 0 12 chr1 38034962 38035044 -159160388 + RSINE1 SINE B4 60 140 -25 7 875 25 65 0 0 chr1 38035101 38035147 -159160285 + AT_rich Low_complexity Low_complexity 1 46 0 7 875 260 300 12 0 chr1 38035236 38035406 -159160026 + (TATATG)n Simple_repeat Simple_repeat 6 177 0 7 875 838 298 50 29 chr1 38035421 38035701 -159159731 - B4A SINE B4 -4 288 3 7 875 403 40 68 0 chr1 38035711 38035785 -159159647 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 875 709 163 11 38 chr1 38035819 38035837 -159159595 + (TCTA)n Simple_repeat Simple_repeat 4 20 0 7 875 3517 23 5 0 chr1 38035837 38036231 -159159201 - MTA_Mm LTR MaLR 0 396 1 7 875 8890 45 16 2 chr1 38036231 38037314 -159158118 - MTA_Mm-int LTR MaLR 0 1098 1 7 875 3459 33 5 0 chr1 38037314 38037708 -159157724 - MTA_Mm LTR MaLR 0 396 1 7 875 709 163 11 38 chr1 38037708 38037872 -159157560 + (TCTA)n Simple_repeat Simple_repeat 3 163 0 8 875 2038 141 85 8 chr1 38038046 38038255 -159157177 - ORR1B1 LTR MaLR 0 394 179 8 875 396 0 0 0 chr1 38038255 38038299 -159157133 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 875 2038 141 85 8 chr1 38038299 38038454 -159156978 - ORR1B1 LTR MaLR -216 178 2 8 875 540 87 21 11 chr1 38038455 38038548 -159156884 + (TTC)n Simple_repeat Simple_repeat 3 96 0 8 875 306 0 0 0 chr1 38038545 38038579 -159156853 + (TC)n Simple_repeat Simple_repeat 1 34 0 8 875 232 278 90 28 chr1 38038638 38038816 -159156616 - L1M7 LINE L1 -4911 1307 1119 8 875 344 262 23 16 chr1 38038911 38039039 -159156393 - L1_Mur3 LINE L1 -444 5436 5308 8 875 912 288 155 11 chr1 38039031 38039638 -159155794 - L1M4b LINE L1 -857 6143 5450 8 875 1191 74 0 0 chr1 38039680 38039828 -159155604 - B1_Mus1 SINE Alu 0 148 1 8 875 753 244 143 12 chr1 38039924 38040181 -159155251 - L1M4b LINE L1 -1876 5130 4844 8 875 3468 28 5 0 chr1 38040181 38040575 -159154857 - MTA_Mm LTR MaLR 0 396 1 8 875 753 239 144 13 chr1 38040575 38040667 -159154765 - L1M4b LINE L1 -2157 4843 4729 8 875 198 0 0 0 chr1 38040674 38040696 -159154736 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 875 762 255 15 68 chr1 38040713 38040919 -159154513 - B3A SINE B2 -3 195 1 9 875 341 254 133 5 chr1 38040939 38041129 -159154303 - L1M4b LINE L1 -2294 4706 4507 8 875 313 239 0 15 chr1 38041352 38041420 -159154012 - RSINE1 SINE B4 -95 70 4 9 875 253 289 0 0 chr1 38041420 38041453 -159153979 + RSINE1 SINE B4 57 89 -76 9 875 1082 121 36 6 chr1 38041453 38041619 -159153813 + B2_Mm2 SINE B2 1 171 -24 9 875 245 312 12 38 chr1 38041610 38041690 -159153742 + RSINE1 SINE B4 88 165 0 9 875 324 290 63 95 chr1 38042032 38042281 -159153151 + L1MEg LINE L1 1789 2021 -3987 9 875 233 158 83 50 chr1 38042303 38042363 -159153069 + MT2B LTR ERVL 186 247 -354 9 875 267 119 46 62 chr1 38042324 38042389 -159153043 + B1_Mur4 SINE Alu 53 107 -10 9 875 345 180 180 99 chr1 38043466 38043577 -159151855 - B2_Mm2 SINE B2 -75 120 1 9 875 401 233 155 0 chr1 38043646 38043749 -159151683 - RSINE1 SINE B4 -36 129 11 9 875 368 286 157 30 chr1 38043801 38043967 -159151465 - L1M4b LINE L1 -7135 199 13 8 875 222 37 0 0 chr1 38044457 38044484 -159150948 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 875 343 250 68 0 chr1 38045070 38045158 -159150274 + PB1D7 SINE Alu 24 117 -3 1 875 1013 62 8 8 chr1 38045321 38045452 -159149980 + B1_Mus1 SINE Alu 3 133 -15 1 875 426 230 150 0 chr1 38045863 38045963 -159149469 - PB1D7 SINE Alu 0 120 6 1 875 225 125 49 24 chr1 38046129 38046170 -159149262 + ID4_ SINE ID 37 78 -5 1 875 249 314 0 0 chr1 38046268 38046338 -159149094 + ID4_ SINE ID 3 72 -11 1 875 761 188 21 7 chr1 38046601 38046746 -159148686 + B1_Mus2 SINE Alu 1 147 0 1 875 1447 78 16 0 chr1 38046750 38046941 -159148491 + B2_Mm2 SINE B2 2 195 0 1 875 438 20 0 0 chr1 38047843 38047894 -159147538 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 875 698 227 28 0 chr1 38047902 38048043 -159147389 - B1_Mur4 SINE Alu -1 149 5 1 875 653 229 20 27 chr1 38048248 38048396 -159147036 + B1_Mur3 SINE Alu 3 149 0 1 875 295 311 44 11 chr1 38048692 38048783 -159146649 + B4 SINE B4 75 168 -124 1 875 538 241 0 36 chr1 38048712 38048824 -159146608 + PB1D9 SINE Alu 13 120 0 1 875 872 216 50 30 chr1 38048984 38049184 -159146248 + B3 SINE B2 2 205 -11 1 875 1203 48 0 7 chr1 38049973 38050120 -159145312 + B1_Mm SINE Alu 2 147 0 1 875 216 0 0 0 chr1 38050197 38050221 -159145211 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 875 283 294 23 12 chr1 38050262 38050348 -159145084 + ID SINE ID 2 88 -136 1 875 874 142 21 0 chr1 38051414 38051555 -159143877 + Lx9 LINE L1 7322 7465 -179 1 875 379 204 86 0 chr1 38052042 38052135 -159143297 + PB1D9 SINE Alu 4 104 -16 1 875 21 0 0 0 chr1 38052742 38052763 -159142669 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 712 241 6 71 chr1 38052772 38052955 -159142477 + RLTR14 LTR ERV1 1 171 -211 1 875 367 239 28 91 chr1 38053114 38053257 -159142175 - MTD LTR MaLR -285 134 1 1 875 301 261 10 61 chr1 38053268 38053366 -159142066 + B1F SINE Alu 1 93 -56 1 875 269 278 217 0 chr1 38053366 38053380 -159142052 + ID_B1 SINE B4 81 217 -7 1 875 21 0 0 0 chr1 38056352 38056373 -159139059 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 278 277 109 70 chr1 38056693 38056821 -159138611 - ID_B1 SINE B4 -1 223 91 1 875 234 0 0 0 chr1 38057376 38057402 -159138030 + (T)n Simple_repeat Simple_repeat 1 26 0 1 875 1300 41 0 0 chr1 38057402 38057549 -159137883 - B1_Mm SINE Alu 0 147 1 1 875 1297 35 7 0 chr1 38057554 38057699 -159137733 - B1_Mus1 SINE Alu 0 148 3 1 875 736 71 43 0 chr1 38058393 38058508 -159136924 - B1_Mus2 SINE Alu -12 138 1 1 875 732 203 26 92 chr1 38058953 38059148 -159136284 + B3A SINE B2 1 182 -16 1 875 1319 27 0 0 chr1 38059178 38059325 -159136107 + B1_Mm SINE Alu 1 147 0 1 875 180 0 0 0 chr1 38059325 38059345 -159136087 + (A)n Simple_repeat Simple_repeat 1 20 0 1 875 857 184 14 34 chr1 38059539 38059685 -159135747 + B1_Mus1 SINE Alu 1 143 -5 1 875 594 272 18 6 chr1 38059962 38060125 -159135307 - B3A SINE B2 -33 165 1 1 875 535 271 30 0 chr1 38060203 38060336 -159135096 + B1_Mur1 SINE Alu 6 142 -7 1 875 264 59 0 0 chr1 38060700 38060734 -159134698 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 875 749 146 433 45 chr1 38060818 38061086 -159134346 - ORR1D1 LTR MaLR -2 372 1 1 875 445 329 43 0 chr1 38061201 38061341 -159134091 - B1F2 SINE Alu -3 146 1 1 875 421 280 88 11 chr1 38061603 38061793 -159133639 - L1M4 LINE L1 -434 5728 5508 1 875 3141 70 31 0 chr1 38061796 38062179 -159133253 - L1_Mus1 LINE L1 0 6567 6173 1 875 391 219 45 45 chr1 38062284 38062394 -159133038 - PB1D10 SINE Alu 0 117 8 1 875 313 276 10 58 chr1 38062309 38062413 -159133019 - ID_B1 SINE B4 -53 171 73 1 875 747 276 114 28 chr1 38062418 38062961 -159132471 - L1M4 LINE L1 -758 5388 4799 1 875 823 178 243 0 chr1 38063003 38063172 -159132260 - B3 SINE B2 -5 211 2 1 875 341 301 0 0 chr1 38063399 38063472 -159131960 - ID4 SINE ID -1 82 10 1 875 693 194 80 22 chr1 38063680 38063817 -159131615 - B1_Mm SINE Alu -1 146 2 1 875 782 150 52 8 chr1 38064323 38064457 -159130975 - B1_Mur4 SINE Alu 0 150 11 1 875 276 231 19 9 chr1 38064460 38064565 -159130867 + CT-rich Low_complexity Low_complexity 4 109 0 1 875 830 146 36 21 chr1 38065044 38065184 -159130248 - B1_Mur4 SINE Alu 0 150 9 1 875 427 276 31 31 chr1 38065358 38065485 -159129947 - PB1 SINE Alu 0 127 1 1 875 2394 162 182 36 chr1 38066253 38066752 -159128680 - RMER15 LTR ERVL -3 572 1 1 875 500 297 144 0 chr1 38066920 38067122 -159128310 - MLT1G3 LTR MaLR -229 366 136 1 875 1679 201 59 80 chr1 38067139 38067529 -159127903 - ORR1C2 LTR MaLR 0 384 3 1 875 382 181 0 0 chr1 38067781 38067853 -159127579 + ORR1D-int LTR MaLR 379 450 -920 1 875 866 162 256 6 chr1 38067902 38068070 -159127362 + B3 SINE B2 1 210 -6 1 875 1104 52 0 0 chr1 38068101 38068236 -159127196 + B1_Mm SINE Alu 13 147 0 1 875 255 203 40 68 chr1 38068588 38068662 -159126770 - tRNA-Ala-GCA tRNA tRNA -2 73 2 1 875 495 263 93 13 chr1 38068727 38069000 -159126432 - L1ME1 LINE L1 -275 5904 5609 1 875 273 197 0 0 chr1 38069013 38069084 -159126348 + G-rich Low_complexity Low_complexity 2 72 0 1 875 386 327 85 16 chr1 38069438 38069696 -159125736 - L1MD2 LINE L1 -17 6342 6067 1 875 345 277 45 50 chr1 38069936 38070134 -159125298 - L1MD2 LINE L1 -815 5331 5135 1 875 460 241 143 98 chr1 38070197 38070667 -159124765 - L1MD2 LINE L1 -1199 4947 4457 1 875 1094 82 0 40 chr1 38070680 38070832 -159124600 - B1_Mus1 SINE Alu -1 147 2 1 875 1390 86 16 16 chr1 38070841 38071031 -159124401 - B2_Mm1t SINE B2 0 193 4 1 875 21 0 0 0 chr1 38071066 38071087 -159124345 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 502 345 53 0 chr1 38071154 38071325 -159124107 + B3A SINE B2 1 180 -18 1 875 508 209 299 8 chr1 38071382 38071669 -159123763 - ORR1D1 LTR MaLR 0 370 1 1 875 301 218 39 167 chr1 38072073 38072277 -159123155 - L1MC3 LINE L1 -799 6986 6809 1 875 486 269 162 30 chr1 38072301 38072692 -159122740 - L1MC3 LINE L1 -2280 5505 5067 1 875 875 208 142 0 chr1 38073139 38073322 -159122110 - B3 SINE B2 -5 211 3 1 875 315 250 16 72 chr1 38073367 38073492 -159121940 + RLTR15 LTR ERVK 49 166 -193 1 875 1532 37 25 69 chr1 38073583 38073785 -159121647 + B2_Mm1a SINE B2 1 193 0 1 875 1053 222 29 10 chr1 38075352 38075561 -159119871 - B3 SINE B2 -3 213 1 1 875 273 331 8 8 chr1 38076154 38076279 -159119153 + GA-rich Low_complexity Low_complexity 3 127 0 1 875 577 251 110 6 chr1 38076626 38076790 -159118642 + Lx9 LINE L1 7166 7346 -298 1 875 282 216 160 13 chr1 38076802 38076877 -159118555 - B4A SINE B4 -54 238 153 1 875 1272 78 78 0 chr1 38076897 38077077 -159118355 - B2_Mm2 SINE B2 0 195 2 1 875 378 318 0 0 chr1 38077077 38077165 -159118267 - B4A SINE B4 -197 95 8 1 875 254 400 64 6 chr1 38077429 38077585 -159117847 - RSINE1 SINE B4 0 165 1 1 875 829 150 0 0 chr1 38077676 38077809 -159117623 - B1_Mur4 SINE Alu -2 148 16 1 875 199 203 15 15 chr1 38078455 38078520 -159116912 + GA-rich Low_complexity Low_complexity 2 66 0 1 875 181 114 21 64 chr1 38079021 38079068 -159116364 + A-rich Low_complexity Low_complexity 4 48 0 1 875 698 231 101 111 chr1 38079612 38079652 -159115780 - B4A SINE B4 -6 286 245 1 875 1437 70 10 31 chr1 38079652 38079845 -159115587 - B2_Mm2 SINE B2 -6 189 1 1 875 698 231 101 111 chr1 38079845 38080092 -159115340 - B4A SINE B4 -48 244 2 1 875 228 250 58 35 chr1 38080635 38080722 -159114710 - L1MC5 LINE L1 -873 7088 7000 1 875 235 269 50 25 chr1 38080952 38081032 -159114400 - L1MC5 LINE L1 -1181 6780 6699 1 875 6807 142 15 7 chr1 38081145 38082382 -159113050 - Lx LINE L1 -2 6652 5441 1 875 525 304 124 82 chr1 38084263 38084729 -159110703 - MLT1D LTR MaLR -19 486 1 1 875 1293 48 0 0 chr1 38084777 38084924 -159110508 - B1_Mus2 SINE Alu 0 147 1 1 875 354 58 19 0 chr1 38085912 38085964 -159109468 - RLTR24 LTR ERV1 -37 492 440 1 875 549 0 0 0 chr1 38086006 38086067 -159109365 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 875 286 247 33 12 chr1 38086125 38086222 -159109210 + L1MD LINE L1 3777 3880 -2266 1 875 620 262 62 34 chr1 38086371 38086517 -159108915 + RSINE1 SINE B4 12 161 -4 1 875 425 154 302 19 chr1 38087161 38087267 -159108165 + B1_Mur2 SINE Alu 1 136 -13 1 875 360 0 0 0 chr1 38087270 38087310 -159108122 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 875 903 227 20 15 chr1 38087311 38087508 -159107924 - B3 SINE B2 -16 200 3 1 875 279 273 201 29 chr1 38087717 38087921 -159107511 + L1MD LINE L1 4878 5116 -1030 1 875 735 245 22 0 chr1 38087924 38088063 -159107369 + RSINE1 SINE B4 2 143 -22 1 875 346 264 44 26 chr1 38088497 38088610 -159106822 + PB1D9 SINE Alu 4 118 -2 1 875 372 265 8 57 chr1 38088914 38089033 -159106399 - B1F SINE Alu 0 127 6 1 875 239 291 0 140 chr1 38088947 38089047 -159106385 - MT2B2 LTR ERVL -343 241 156 1 875 422 289 87 60 chr1 38089476 38089660 -159105772 + B3A SINE B2 1 189 -9 1 875 307 286 0 41 chr1 38091570 38091643 -159103789 - ID2 SINE ID -4 79 10 1 875 24 0 0 0 chr1 38092154 38092178 -159103254 + AT_rich Low_complexity Low_complexity 1 24 0 1 875 321 172 0 0 chr1 38092875 38092939 -159102493 + GA-rich Low_complexity Low_complexity 1 64 0 1 875 245 222 146 62 chr1 38093530 38093626 -159101806 - PB1D10 SINE Alu 0 117 14 1 875 519 269 43 92 chr1 38093697 38093938 -159101494 + ID_B1 SINE B4 2 221 -71 2 875 589 221 93 7 chr1 38094554 38094704 -159100728 - RMER5 LTR ERV1 -52 482 320 2 875 276 253 92 13 chr1 38095120 38095196 -159100236 + B1F SINE Alu 46 127 -22 2 875 533 213 55 39 chr1 38095871 38095998 -159099434 - B3 SINE B2 -84 132 4 2 875 369 295 67 0 chr1 38096326 38096431 -159099001 + PB1D10 SINE Alu 2 113 -4 2 875 468 218 139 76 chr1 38096711 38096855 -159098577 - RSINE1 SINE B4 0 165 13 2 875 531 113 245 0 chr1 38096902 38097008 -159098424 - B1_Mus2 SINE Alu 0 147 16 2 875 198 0 0 0 chr1 38097015 38097037 -159098395 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 875 634 251 91 0 chr1 38097166 38097341 -159098091 - B3A SINE B2 -7 191 1 2 875 225 0 0 0 chr1 38097867 38097892 -159097540 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 875 300 214 83 46 chr1 38098788 38098896 -159096536 - B3A SINE B2 -84 114 3 2 875 624 62 0 0 chr1 38098940 38099021 -159096411 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 875 231 288 85 0 chr1 38099104 38099163 -159096269 + ID4_ SINE ID 2 65 -18 2 875 21 0 0 0 chr1 38099431 38099452 -159095980 + AT_rich Low_complexity Low_complexity 1 21 0 2 875 1211 56 0 0 chr1 38099935 38100079 -159095353 - B1_Mus2 SINE Alu -2 145 2 2 875 261 283 59 65 chr1 38100169 38100339 -159095093 - L1MEf LINE L1 -4585 1615 1447 2 875 288 0 0 0 chr1 38101432 38101464 -159093968 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 875 304 221 85 19 chr1 38101772 38101878 -159093554 - PB1 SINE Alu 0 127 15 2 875 794 249 90 46 chr1 38103732 38104077 -159091355 - Lx9 LINE L1 -373 7271 6912 2 875 656 221 79 34 chr1 38104096 38104274 -159091158 - Lx9 LINE L1 -786 6858 6673 2 875 618 269 90 0 chr1 38104388 38104544 -159090888 + B3 SINE B2 36 205 -11 2 875 222 121 0 0 chr1 38104949 38104982 -159090450 + B3 SINE B2 2 34 -182 2 875 312 200 0 0 chr1 38106323 38106393 -159089039 + GA-rich Low_complexity Low_complexity 3 72 0 2 875 744 51 256 0 chr1 38112676 38112793 -159082639 - B1_Mus1 SINE Alu -1 147 1 2 875 1241 179 9 18 chr1 38116580 38116807 -159078625 + URR1B DNA MER1_type 1 225 0 2 875 1346 273 51 70 chr1 38116876 38117679 -159077753 + L1_Rod LINE L1 3838 4625 -1222 2 875 7352 87 19 6 chr1 38117773 38119704 -159075728 - L1VL2 LINE L1 -1586 2029 70 2 875 1313 74 34 0 chr1 38120353 38120529 -159074903 + B2_Mm1t SINE B2 2 183 -10 2 875 235 296 163 78 chr1 38121623 38121868 -159073564 + MLT1B LTR MaLR 15 280 -110 2 875 1332 71 16 0 chr1 38122048 38122231 -159073201 + B2_Mm1a SINE B2 1 186 -7 2 875 261 83 0 0 chr1 38122245 38122281 -159073151 + (A)n Simple_repeat Simple_repeat 1 36 0 2 875 468 274 35 0 chr1 38122967 38123080 -159072352 - PB1D10 SINE Alu 0 117 1 2 875 773 183 74 34 chr1 38123126 38123301 -159072131 + B3A SINE B2 1 182 -16 2 875 497 296 45 26 chr1 38123560 38123716 -159071716 + RSINE1 SINE B4 3 161 -4 2 875 297 299 51 57 chr1 38123842 38124019 -159071413 - ID_B1 SINE B4 -28 196 21 2 875 218 311 82 64 chr1 38124176 38124286 -159071146 + PB1D10 SINE Alu 1 112 -5 2 875 277 360 0 0 chr1 38124734 38124809 -159070623 + B1F SINE Alu 3 77 -72 2 875 1001 286 128 28 chr1 38125641 38126148 -159069284 + Lx8 LINE L1 6750 7307 -166 2 875 229 306 88 26 chr1 38126379 38126416 -159069016 + MER74B LTR ERVL 226 263 -359 2 875 897 245 87 36 chr1 38126416 38126772 -159068660 + ORR1D1 LTR MaLR 1 374 0 2 875 229 306 88 26 chr1 38126772 38126848 -159068584 + MER74B LTR ERVL 264 346 -276 2 875 180 0 0 0 chr1 38129028 38129048 -159066384 + (T)n Simple_repeat Simple_repeat 1 20 0 2 875 1664 21 5 0 chr1 38129048 38129239 -159066193 - B2_Mm1t SINE B2 0 193 2 2 875 547 227 78 31 chr1 38129734 38129925 -159065507 + Lx6 LINE L1 7072 7271 -189 2 875 1150 116 0 0 chr1 38130231 38130395 -159065037 + B2_Mm2 SINE B2 1 164 -31 2 875 1140 49 21 7 chr1 38130445 38130589 -159064843 + B1_Mus1 SINE Alu 2 147 -1 2 875 236 192 0 0 chr1 38130590 38130642 -159064790 + A-rich Low_complexity Low_complexity 1 52 0 2 875 589 261 50 19 chr1 38132916 38133076 -159062356 - ID_B1 SINE B4 -57 167 3 2 875 333 265 79 29 chr1 38133252 38133392 -159062040 + B1F SINE Alu 2 148 -1 2 875 32 26 0 0 chr1 38134806 38134845 -159060587 + AT_rich Low_complexity Low_complexity 1 39 0 2 875 515 257 112 39 chr1 38135380 38135558 -159059874 - B3 SINE B2 -24 192 2 2 875 1404 63 10 68 chr1 38135588 38135793 -159059639 + B2_Mm2 SINE B2 1 193 -2 2 875 21 0 0 0 chr1 38135955 38135976 -159059456 + AT_rich Low_complexity Low_complexity 1 21 0 2 875 191 204 20 0 chr1 38136762 38136811 -159058621 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 875 553 200 142 30 chr1 38140869 38141003 -159054429 - B1_Mur2 SINE Alu 0 149 1 2 875 1395 63 15 26 chr1 38141082 38141277 -159054155 - B2_Mm2 SINE B2 0 195 3 2 875 21 0 0 0 chr1 38141473 38141494 -159053938 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 261 0 0 0 chr1 38146730 38146759 -159048673 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 2 876 525 71 0 0 chr1 38146945 38147015 -159048417 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 876 540 124 0 0 chr1 38147015 38147052 -159048380 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 876 2737 56 6 0 chr1 38147052 38147394 -159048038 + ORR1A1 LTR MaLR 3 346 0 2 876 540 124 0 0 chr1 38147394 38147445 -159047987 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 876 738 149 7 29 chr1 38147457 38147595 -159047837 + B1_Mur4 SINE Alu 16 150 0 2 876 204 135 0 0 chr1 38148393 38148430 -159047002 + (T)n Simple_repeat Simple_repeat 1 37 0 2 876 960 65 0 35 chr1 38148433 38148576 -159046856 - B1_Mus1 SINE Alu 0 148 11 2 876 1193 56 0 0 chr1 38149538 38149681 -159045751 + B1_Mus2 SINE Alu 1 143 -4 2 876 2889 49 0 0 chr1 38150062 38150408 -159045024 + ORR1A1 LTR MaLR 1 346 0 2 876 13754 49 26 1 chr1 38150408 38152156 -159043276 + ORR1A1-int LTR MaLR 1 1792 0 2 876 2476 62 40 0 chr1 38152156 38152481 -159042951 + ORR1A1 LTR MaLR 1 338 -8 2 876 313 349 23 16 chr1 38153198 38153326 -159042106 - RSINE1 SINE B4 -31 134 6 2 876 295 253 14 72 chr1 38153601 38153739 -159041693 + B3A SINE B2 1 197 -1 2 876 424 308 11 0 chr1 38153717 38153808 -159041624 + RSINE1 SINE B4 74 165 0 2 876 307 326 92 64 chr1 38153896 38154161 -159041271 - B4A SINE B4 -1 291 13 2 876 254 125 0 20 chr1 38154253 38154302 -159041130 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 876 1081 76 21 0 chr1 38154447 38154591 -159040841 + B1_Mus2 SINE Alu 1 147 0 2 876 198 143 0 0 chr1 38154591 38154626 -159040806 + (A)n Simple_repeat Simple_repeat 1 35 0 2 876 624 244 199 47 chr1 38154977 38155312 -159040120 - MTD LTR MaLR -14 405 1 2 876 181 224 153 69 chr1 38155517 38155589 -159039843 - L4 LINE RTE -215 1814 1737 2 876 686 176 0 16 chr1 38156390 38156511 -159038921 - PB1D9 SINE Alu 0 120 2 2 876 261 272 128 37 chr1 38156971 38157041 -159038391 + RMER15 LTR ERVL 397 474 -101 2 876 1160 166 8 47 chr1 38157041 38157275 -159038157 + URR1B DNA MER1_type 1 225 0 2 876 261 272 128 37 chr1 38157275 38157368 -159038064 + RMER15 LTR ERVL 475 574 -1 2 876 440 310 26 52 chr1 38157368 38157518 -159037914 - RSINE1 SINE B4 -18 147 2 2 876 569 161 179 0 chr1 38158208 38158320 -159037112 - B1_Mur4 SINE Alu -17 133 2 2 876 705 236 153 6 chr1 38158344 38158527 -159036905 - B3 SINE B2 -6 210 1 2 876 245 334 106 3 chr1 38158624 38158784 -159036648 - MIRb SINE MIR -57 205 32 2 876 23 33 0 0 chr1 38158796 38158826 -159036606 + AT_rich Low_complexity Low_complexity 1 30 0 2 876 309 89 0 0 chr1 38158887 38158932 -159036500 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 2 876 225 0 0 0 chr1 38159105 38159130 -159036302 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 876 340 314 183 17 chr1 38159145 38159265 -159036167 - RSINE1 SINE B4 -21 144 5 2 876 528 174 36 9 chr1 38159531 38159641 -159035791 + PB1D9 SINE Alu 2 114 -6 2 876 438 36 0 0 chr1 38159642 38159698 -159035734 + (CATA)n Simple_repeat Simple_repeat 1 56 0 2 876 256 204 20 0 chr1 38160216 38160265 -159035167 - B1F SINE Alu -32 117 68 2 876 296 250 0 40 chr1 38160603 38160678 -159034754 + PB1D10 SINE Alu 46 117 0 2 876 920 235 179 25 chr1 38160683 38161046 -159034386 + MTD LTR MaLR 1 419 0 2 876 381 315 120 70 chr1 38161442 38161806 -159033626 + ORR1E LTR MaLR 1 356 -23 2 876 262 205 44 33 chr1 38162542 38162633 -159032799 + L1MD LINE L1 4540 4631 -1515 2 876 328 270 90 0 chr1 38162800 38162889 -159032543 + PB1D10 SINE Alu 12 108 -9 2 876 438 280 19 39 chr1 38162981 38163137 -159032295 - RSINE1 SINE B4 -11 154 2 2 876 519 288 0 60 chr1 38163305 38163438 -159031994 + RSINE1 SINE B4 3 127 -38 2 876 948 185 22 0 chr1 38163610 38163788 -159031644 - URR1B DNA MER1_type 0 225 44 2 876 674 192 289 12 chr1 38163788 38164041 -159031391 + ORR1D2-int LTR MaLR 1048 1370 0 2 876 231 139 0 0 chr1 38164041 38164077 -159031355 + ORR1D2 LTR MaLR 1 36 -338 2 876 729 244 199 20 chr1 38164100 38164326 -159031106 + ORR1D2 LTR MaLR 104 375 -4 2 876 22 0 0 0 chr1 38165052 38165074 -159030358 + AT_rich Low_complexity Low_complexity 1 22 0 2 876 357 186 0 0 chr1 38165505 38165575 -159029857 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 876 627 170 9 0 chr1 38166862 38166968 -159028464 - MTC LTR MaLR -314 107 1 2 876 328 122 4 0 chr1 38167083 38167139 -159028293 + B1_Mur1 SINE Alu 91 148 -2 3 876 426 310 29 0 chr1 38167157 38167331 -159028101 + B3A SINE B2 5 183 -15 3 876 27700 91 44 26 chr1 38167901 38169022 -159026410 + L1MB2 LINE L1 689 1835 -4042 3 876 225 0 0 0 chr1 38169022 38169047 -159026385 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 876 27700 90 38 38 chr1 38169047 38170251 -159025181 + L1MB2 LINE L1 1836 2999 -2878 3 876 1169 47 0 51 chr1 38170251 38170407 -159025025 + B1_Mus1 SINE Alu 1 148 0 3 876 27700 115 39 53 chr1 38170407 38173403 -159022029 + L1MB2 LINE L1 3000 5974 -197 3 876 828 266 0 32 chr1 38173531 38173752 -159021680 + B3 SINE B2 3 216 0 3 876 846 85 139 0 chr1 38174111 38174240 -159021192 + B1_Mus2 SINE Alu 1 147 0 3 876 211 213 0 0 chr1 38174853 38174900 -159020532 - Alu SINE Alu -118 57 11 3 876 477 248 23 76 chr1 38175208 38175339 -159020093 - B1_Mur1 SINE Alu -25 124 1 3 876 1195 48 0 7 chr1 38175367 38175513 -159019919 + B1_Mm SINE Alu 3 147 0 3 876 926 150 114 0 chr1 38175678 38175871 -159019561 + URR1A DNA MER1_type 12 226 0 3 876 873 93 0 0 chr1 38176105 38176234 -159019198 + B1_Mus1 SINE Alu 20 148 0 3 876 210 143 0 0 chr1 38176246 38176281 -159019151 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 876 721 250 19 57 chr1 38176485 38176697 -159018735 + B3 SINE B2 3 206 -10 3 876 1454 68 5 16 chr1 38176759 38176952 -159018480 + B2_Mm1t SINE B2 2 192 -1 3 876 314 98 0 19 chr1 38177010 38177062 -159018370 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 3 876 692 329 19 0 chr1 38177653 38177860 -159017572 + MTD LTR MaLR 2 212 -207 3 876 198 0 0 0 chr1 38177894 38177916 -159017516 + (A)n Simple_repeat Simple_repeat 1 22 0 3 876 341 288 40 73 chr1 38178119 38178269 -159017163 - MER5A DNA MER1_type -2 187 43 3 876 740 262 87 33 chr1 38179063 38179339 -159016093 + B4A SINE B4 1 291 -1 3 876 449 277 15 15 chr1 38179641 38179773 -159015659 - ID_B1 SINE B4 -3 221 90 3 876 561 202 74 16 chr1 38180121 38180242 -159015190 + B3 SINE B2 1 128 -88 3 876 192 40 0 0 chr1 38180339 38180364 -159015068 + (A)n Simple_repeat Simple_repeat 1 25 0 3 876 442 241 112 152 chr1 38180981 38181145 -159014287 + B4 SINE B4 53 215 -77 3 876 198 0 0 0 chr1 38181145 38181167 -159014265 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 876 442 241 112 152 chr1 38181167 38181252 -159014180 + B4 SINE B4 216 292 0 3 876 486 321 0 0 chr1 38181291 38181425 -159014007 + RSINE1 SINE B4 3 136 -29 3 876 345 416 44 0 chr1 38181449 38181586 -159013846 + RSINE1 SINE B4 21 163 -2 3 876 307 257 152 42 chr1 38181940 38182058 -159013374 + B3A SINE B2 1 131 -67 3 876 629 141 77 15 chr1 38183102 38183232 -159012200 + B1_Mur4 SINE Alu 13 150 0 3 876 564 253 257 5 chr1 38183306 38183528 -159011904 + B4A SINE B4 5 282 -10 3 876 323 257 113 14 chr1 38183547 38183689 -159011743 - MIR SINE MIR -55 207 52 3 876 257 312 103 29 chr1 38183733 38183908 -159011524 - L2a LINE L2 -15 3411 3224 3 876 464 242 0 30 chr1 38184340 38184472 -159010960 - B1_Mur1 SINE Alu 0 149 22 3 876 28 99 0 0 chr1 38186598 38186689 -159008743 + GC_rich Low_complexity Low_complexity 1 91 0 3 876 264 77 0 0 chr1 38186815 38186854 -159008578 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 3 876 1491 198 96 21 chr1 38187968 38188344 -159007088 - MTD LTR MaLR -2 417 14 3 876 23 33 0 0 chr1 38188655 38188685 -159006747 + AT_rich Low_complexity Low_complexity 1 30 0 3 876 252 284 114 47 chr1 38189445 38189656 -159005776 - L2 LINE L2 -2186 1233 1009 3 876 233 247 87 33 chr1 38189894 38189986 -159005446 + RLTR20A LTR ERVK 90 186 -355 3 876 283 316 10 0 chr1 38190154 38190252 -159005180 - L2 LINE L2 -2541 878 780 3 876 449 311 46 23 chr1 38190254 38190471 -159004961 + B4A SINE B4 1 222 -70 3 876 245 256 38 25 chr1 38190552 38190632 -159004800 - MER119 DNA MER1_type -2 581 501 3 876 264 299 41 0 chr1 38190725 38190822 -159004610 - MER119 DNA MER1_type -227 356 256 3 876 21 0 0 0 chr1 38190941 38190962 -159004470 + AT_rich Low_complexity Low_complexity 1 21 0 3 876 338 264 40 26 chr1 38191003 38191155 -159004277 - L1MC4 LINE L1 -780 7262 7109 3 876 273 119 0 0 chr1 38191158 38191200 -159004232 + B1_Mus2 SINE Alu 7 48 -99 3 876 1098 88 0 13 chr1 38191232 38191382 -159004050 - B1_Mus1 SINE Alu 0 148 1 3 876 4155 170 80 68 chr1 38191406 38192298 -159003134 - RMER19B LTR ERVK 0 902 1 3 876 287 294 88 40 chr1 38192368 38192595 -159002837 - L2 LINE L2 -1180 2239 2002 3 876 504 229 15 22 chr1 38192679 38192813 -159002619 + Lx7 LINE L1 7257 7389 -307 3 876 222 37 0 0 chr1 38192817 38192844 -159002588 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 876 279 0 0 0 chr1 38192844 38192874 -159002558 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 876 186 323 103 16 chr1 38193096 38193222 -159002210 - L2 LINE L2 -783 2636 2500 3 876 297 282 0 0 chr1 38193332 38193349 -159002083 - RMER1A Other Other 0 1030 1014 3 876 306 0 0 0 chr1 38193349 38193383 -159002049 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 876 2669 255 127 14 chr1 38193383 38193454 -159001978 - RMER1C Other Other -21 1321 1238 3 876 351 0 0 0 chr1 38193454 38193493 -159001939 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 876 2669 254 87 66 chr1 38193493 38194484 -159000948 - RMER1C Other Other -105 1237 45 3 876 621 219 76 76 chr1 38194779 38194977 -159000455 + B3A SINE B2 1 198 0 3 876 1010 102 0 0 chr1 38195004 38195141 -159000291 + B1_Mus1 SINE Alu 5 141 -7 3 876 935 250 113 60 chr1 38195281 38195597 -158999835 + MTEa LTR MaLR 11 343 -36 3 876 2585 90 26 3 chr1 38195597 38195985 -158999447 + MT2C_Mm LTR ERVL 1 397 -78 3 876 1518 78 0 0 chr1 38196760 38196964 -158998468 + MTB LTR MaLR 197 400 0 3 876 234 0 0 0 chr1 38196978 38197004 -158998428 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 3 876 267 225 0 0 chr1 38197009 38197080 -158998352 + (CATA)n Simple_repeat Simple_repeat 1 71 0 3 876 569 259 217 14 chr1 38197358 38197580 -158997852 + B4A SINE B4 3 269 -23 3 876 546 54 0 0 chr1 38197580 38197654 -158997778 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 876 2248 97 71 16 chr1 38197711 38198077 -158997355 - ORR1B1 LTR MaLR 0 394 9 3 876 330 129 0 0 chr1 38198143 38198205 -158997227 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 876 328 233 50 2 chr1 38198287 38198381 -158997051 + B4 SINE B4 4 103 -62 3 876 630 39 0 0 chr1 38198990 38199067 -158996365 + (GGA)n Simple_repeat Simple_repeat 2 78 0 3 876 349 321 34 56 chr1 38199549 38199744 -158995688 + MIR3 SINE MIR 4 197 -11 3 876 1093 38 0 43 chr1 38200596 38200735 -158994697 - L1_Mus1 LINE L1 -196 6371 6239 3 876 919 267 9 4 chr1 38201371 38201597 -158993835 - ORR1D2 LTR MaLR -141 229 3 3 876 542 335 128 28 chr1 38201881 38202237 -158993195 - MER90a LTR ERV1 0 614 211 3 876 2958 62 38 30 chr1 38202237 38202634 -158992798 + MTB LTR MaLR 1 400 0 3 876 542 335 128 28 chr1 38202634 38202738 -158992694 - MER90a LTR ERV1 -404 210 108 3 876 220 213 0 21 chr1 38202914 38202962 -158992470 - B1F SINE Alu -3 146 100 3 876 902 256 165 18 chr1 38203462 38203855 -158991577 - MLT1C LTR MaLR -7 460 10 3 876 623 322 45 59 chr1 38204181 38204471 -158990961 + B4A SINE B4 3 288 -4 3 876 339 96 0 0 chr1 38204487 38204539 -158990893 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 876 82 36 0 0 chr1 38204555 38204665 -158990767 + AT_rich Low_complexity Low_complexity 1 110 0 3 876 399 350 33 42 chr1 38204681 38204893 -158990539 - MER110-int LTR ERV1 -2440 2207 1998 3 876 245 157 13 79 chr1 38205305 38205381 -158990051 + GA-rich Low_complexity Low_complexity 1 71 0 3 876 640 250 14 7 chr1 38205384 38205529 -158989903 - RSINE1 SINE B4 -17 148 3 3 876 549 224 73 103 chr1 38205567 38205771 -158989661 - B3A SINE B2 0 198 1 3 876 518 287 167 38 chr1 38205845 38206084 -158989348 + B4 SINE B4 20 289 -3 3 876 396 181 20 60 chr1 38206179 38206279 -158989153 + MT2B LTR ERVL 160 255 -346 3 876 820 106 30 0 chr1 38206192 38206324 -158989108 + B1_Mus2 SINE Alu 11 146 -1 3 876 678 119 0 0 chr1 38206336 38206470 -158988962 + (GA)n Simple_repeat Simple_repeat 1 134 0 3 876 621 40 0 0 chr1 38206473 38206549 -158988883 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 3 876 461 261 19 14 chr1 38206604 38206717 -158988715 + B1F SINE Alu 2 92 -57 3 876 240 35 0 0 chr1 38206717 38206746 -158988686 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 876 253 348 103 28 chr1 38206746 38206777 -158988655 + FAM SINE Alu 262 292 -19 3 876 243 0 0 0 chr1 38206780 38206807 -158988625 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 876 1387 94 16 0 chr1 38207237 38207428 -158988004 + B2_Mm2 SINE B2 1 194 -1 3 876 530 270 82 43 chr1 38207572 38207804 -158987628 + L1MA6 LINE L1 5939 6179 -121 3 876 422 187 10 52 chr1 38207804 38207900 -158987532 + B3A SINE B2 1 92 -106 3 876 366 186 108 46 chr1 38208008 38208138 -158987294 + L1MA5 LINE L1 6162 6299 -1 3 876 353 254 144 27 chr1 38209702 38209848 -158985584 + MTEb LTR MaLR 122 284 -95 3 876 777 104 0 0 chr1 38209852 38209967 -158985465 + RMER15 LTR ERVL 6 120 -455 3 876 685 141 0 8 chr1 38209993 38210115 -158985317 + URR1B DNA MER1_type 105 225 0 3 876 709 310 66 8 chr1 38210115 38210356 -158985076 - MER45B DNA Tip100 -694 346 92 3 876 1502 78 5 0 chr1 38210356 38210548 -158984884 + B2_Mm1a SINE B2 1 193 0 3 876 764 101 188 0 chr1 38210565 38210703 -158984729 + B2_Mm2 SINE B2 7 170 -25 3 876 311 107 346 19 chr1 38211426 38211530 -158983902 + B2_Mm2 SINE B2 58 195 0 4 876 374 336 0 9 chr1 38211531 38211639 -158983793 - MER45B DNA Tip100 -933 107 1 3 876 236 167 0 0 chr1 38211640 38211682 -158983750 + MER20 DNA MER1_type 177 218 -1 4 876 330 316 101 30 chr1 38211949 38212148 -158983284 + MamRep137 DNA TcMar? 184 396 -48 4 876 408 88 0 0 chr1 38212785 38212842 -158982590 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 876 806 339 66 42 chr1 38213212 38213730 -158981702 + MLT1E3 LTR MaLR 95 624 0 4 876 182 37 0 36 chr1 38213937 38213965 -158981467 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 876 1010 263 61 40 chr1 38214422 38214785 -158980647 - MTC LTR MaLR 0 421 2 4 876 3910 126 11 2 chr1 38214811 38215374 -158980058 - MERVL-int LTR ERVL -1066 4419 3852 4 876 278 324 35 14 chr1 38215563 38215704 -158979728 + L1MC1 LINE L1 6160 6303 -30 4 876 1993 165 59 0 chr1 38216429 38216786 -158978646 + ORR1C1 LTR MaLR 1 378 0 4 876 357 24 0 0 chr1 38216796 38216838 -158978594 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 876 444 256 194 40 chr1 38219088 38219340 -158976092 - B4A SINE B4 0 292 2 4 876 378 261 40 68 chr1 38220040 38220217 -158975215 + MLT1A1 LTR MaLR 20 191 -217 4 876 810 208 143 148 chr1 38220694 38221072 -158974360 - MTEa LTR MaLR -3 376 1 4 876 391 243 9 26 chr1 38222161 38222275 -158973157 + PB1 SINE Alu 7 118 -9 4 876 855 317 82 40 chr1 38222493 38223094 -158972338 - L1MB7 LINE L1 -21 6163 5538 4 876 456 277 22 50 chr1 38223700 38223882 -158971550 - MLT1B LTR MaLR -13 454 278 4 876 371 330 86 94 chr1 38224049 38224293 -158971139 + B4A SINE B4 49 290 -2 4 876 535 278 40 27 chr1 38224291 38224439 -158970993 - MLT1B LTR MaLR -237 153 4 4 876 285 305 139 17 chr1 38225551 38225788 -158969644 + L1M4 LINE L1 4851 5116 -1030 4 876 675 97 0 0 chr1 38225830 38225944 -158969488 + (CA)n Simple_repeat Simple_repeat 1 114 0 4 876 1179 245 75 72 chr1 38226103 38226477 -158968955 + MTE2b LTR MaLR 1 375 -4 4 876 308 267 27 0 chr1 38227151 38227226 -158968206 + L1MEg LINE L1 1882 1958 -4126 4 876 489 297 34 0 chr1 38229440 38229558 -158965874 - B1F SINE Alu -21 128 7 4 876 374 326 88 17 chr1 38229447 38229628 -158965804 - ID_B1 SINE B4 -25 199 6 4 876 240 280 67 108 chr1 38231349 38231469 -158963963 - LTR48 LTR ERV1 -626 161 47 4 876 260 222 0 36 chr1 38231673 38231699 -158963733 + G-rich Low_complexity Low_complexity 2 26 0 4 876 270 0 0 0 chr1 38231699 38231729 -158963703 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 876 260 222 0 36 chr1 38231729 38231758 -158963674 + G-rich Low_complexity Low_complexity 27 55 0 4 876 297 305 0 0 chr1 38231899 38231981 -158963451 + ID4_ SINE ID 2 83 0 4 876 444 135 0 0 chr1 38231982 38232056 -158963376 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 4 876 719 130 19 0 chr1 38233376 38233484 -158961948 + B2_Mm2 SINE B2 1 110 -85 4 876 376 131 10 2 chr1 38233514 38233618 -158961814 + B2_Mm2 SINE B2 47 187 -8 4 876 251 200 0 76 chr1 38235058 38235150 -158960282 + A-rich Low_complexity Low_complexity 2 86 0 4 876 368 288 144 0 chr1 38237320 38237438 -158957994 - RSINE1 SINE B4 -29 136 2 4 876 535 272 14 7 chr1 38237569 38237717 -158957715 - B1F SINE Alu 0 149 1 4 876 560 167 59 0 chr1 38238973 38239075 -158956357 + PB1D9 SINE Alu 2 109 -11 4 876 351 0 0 0 chr1 38239075 38239114 -158956318 + (CAA)n Simple_repeat Simple_repeat 2 40 0 4 876 1294 34 0 0 chr1 38239186 38239334 -158956098 - B1_Mus1 SINE Alu 0 148 1 4 876 229 288 96 0 chr1 38239429 38239502 -158955930 - ID4 SINE ID -3 80 1 4 876 236 299 26 0 chr1 38239580 38239657 -158955775 + ID4_ SINE ID 4 82 -1 4 876 227 54 0 26 chr1 38239704 38239742 -158955690 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 876 678 207 32 32 chr1 38239747 38239902 -158955530 - RSINE1 SINE B4 -8 157 3 4 876 421 183 3 74 chr1 38241009 38241104 -158954328 - PB1D9 SINE Alu 0 120 31 4 876 234 260 0 0 chr1 38241250 38241323 -158954109 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 876 789 194 0 0 chr1 38241340 38241520 -158953912 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 876 275 200 136 15 chr1 38243554 38243620 -158951812 - B4A SINE B4 -12 280 207 4 876 597 270 63 87 chr1 38243956 38244163 -158951269 - B3A SINE B2 0 216 15 4 876 373 245 146 12 chr1 38244658 38244823 -158950609 - L1MEf LINE L1 -4451 2182 1996 4 876 29 28 0 0 chr1 38244823 38244859 -158950573 + AT_rich Low_complexity Low_complexity 1 36 0 4 876 399 210 209 70 chr1 38245108 38245323 -158950109 - L1MEf LINE L1 -4868 1765 1521 4 876 271 157 44 11 chr1 38245323 38245413 -158950019 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 876 844 171 8 12 chr1 38245424 38245693 -158949739 + (CA)n Simple_repeat Simple_repeat 1 267 0 4 876 1210 41 0 20 chr1 38245803 38245952 -158949480 + B1_Mus1 SINE Alu 2 147 -1 4 876 197 132 0 26 chr1 38245953 38245992 -158949440 + GA-rich Low_complexity Low_complexity 2 39 0 4 876 310 236 70 84 chr1 38246205 38246428 -158949004 - L1MA5 LINE L1 -22 6278 6072 4 876 899 249 4 63 chr1 38247102 38247355 -158948077 + RLTR11B LTR ERVK 3 240 -213 4 876 244 288 24 63 chr1 38247475 38247601 -158947831 + RLTR11B LTR ERVK 275 395 -58 4 876 1576 27 27 0 chr1 38247622 38247809 -158947623 + B2_Mm1a SINE B2 2 193 0 4 876 342 152 0 0 chr1 38248266 38248325 -158947107 + GA-rich Low_complexity Low_complexity 1 59 0 4 876 467 333 106 68 chr1 38248344 38248666 -158946766 + MER44A DNA MER2_type 3 336 -3 4 876 1101 95 0 0 chr1 38249472 38249619 -158945813 + B1_Mus2 SINE Alu 1 147 0 4 876 183 164 102 68 chr1 38249927 38249986 -158945446 + L3 LINE CR1 776 836 -3653 4 876 285 29 0 0 chr1 38251628 38251662 -158943770 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 876 5427 87 4 18 chr1 38251662 38252431 -158943001 + Lx3B LINE L1 6214 6971 -2 4 876 390 325 22 91 chr1 38252822 38253025 -158942407 - L1MC1 LINE L1 -19 6314 6129 4 876 762 228 166 6 chr1 38253025 38253206 -158942226 - B3 SINE B2 -6 210 1 4 876 390 325 22 91 chr1 38253206 38253276 -158942156 - L1MC1 LINE L1 -205 6128 6060 4 876 1406 88 0 35 chr1 38253468 38253669 -158941763 - B2_Mm2 SINE B2 -1 194 1 4 876 382 221 65 16 chr1 38257661 38257785 -158937647 + Lx5 LINE L1 6921 7050 0 4 876 281 360 0 0 chr1 38258029 38258129 -158937303 + GA-rich Low_complexity Low_complexity 3 102 0 4 876 656 254 108 6 chr1 38258138 38258304 -158937128 - MTD LTR MaLR -236 183 1 4 876 184 115 0 0 chr1 38258528 38258554 -158936878 + L2c LINE L2 3335 3360 -27 4 876 198 173 0 0 chr1 38258531 38258569 -158936863 + MIRm SINE MIR 223 260 -8 4 876 187 255 39 19 chr1 38259767 38259819 -158935613 + L2b LINE L2 3231 3283 -92 4 876 392 247 12 0 chr1 38260284 38260369 -158935063 + B3A SINE B2 1 86 -112 4 876 311 245 160 20 chr1 38261378 38261478 -158933954 - MER5A DNA MER1_type -6 183 70 4 876 252 200 0 0 chr1 38261478 38261553 -158933879 + CT-rich Low_complexity Low_complexity 1 75 0 4 876 340 286 141 12 chr1 38261554 38261639 -158933793 - PB1D10 SINE Alu -13 104 9 4 876 602 336 81 38 chr1 38262534 38262952 -158932480 + Kanga2_a DNA Tc2 34 469 -419 4 876 321 343 93 36 chr1 38262971 38263219 -158932213 + Kanga2_a DNA Tc2 531 792 -96 4 876 459 259 112 22 chr1 38263638 38263816 -158931616 + Charlie4a DNA MER1_type 151 344 -164 4 876 541 212 0 20 chr1 38265703 38265804 -158929628 + RSINE1 SINE B4 25 123 -42 4 876 210 143 0 0 chr1 38266711 38266746 -158928686 + (CTG)n Simple_repeat Simple_repeat 1 35 0 4 876 315 214 0 0 chr1 38267901 38267971 -158927461 + CT-rich Low_complexity Low_complexity 2 71 0 4 876 1134 144 155 0 chr1 38268650 38268844 -158926588 - URR1B DNA MER1_type -1 224 1 4 876 296 174 32 11 chr1 38268883 38268976 -158926456 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 4 876 237 139 0 0 chr1 38269627 38269670 -158925762 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 876 337 269 97 98 chr1 38269712 38269985 -158925447 - B4A SINE B4 -11 281 1 4 876 270 0 0 0 chr1 38270155 38270185 -158925247 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 4 876 189 315 193 26 chr1 38270670 38270784 -158924648 - MIRb SINE MIR -55 213 81 4 876 1603 105 78 19 chr1 38272075 38272346 -158923086 + RLTR31_Mm LTR ERVK 1 287 -274 4 876 1206 159 17 30 chr1 38272326 38272660 -158922772 + RLTR31_Mm LTR ERVK 168 485 -99 4 877 335 277 10 4 chr1 38273501 38273603 -158921829 - ID4_ SINE ID -46 106 4 4 877 198 308 64 70 chr1 38273691 38273848 -158921584 + L2a LINE L2 3264 3419 -7 4 877 231 114 0 0 chr1 38275215 38275250 -158920182 + (CTG)n Simple_repeat Simple_repeat 3 37 0 4 877 540 30 0 0 chr1 38276956 38277022 -158918410 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 877 358 288 122 89 chr1 38277170 38277529 -158917903 + RMER13A LTR ERVK 195 615 -12 4 877 213 108 0 0 chr1 38277687 38277724 -158917708 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 877 618 202 0 0 chr1 38277751 38277924 -158917508 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 877 803 169 195 38 chr1 38278042 38278227 -158917205 + URR1B DNA MER1_type 1 214 -11 4 877 437 300 170 29 chr1 38278753 38278959 -158916473 + Tigger5 DNA MER2_type 1 235 -2171 4 877 307 330 10 10 chr1 38278949 38279050 -158916382 + Tigger5 DNA MER2_type 2306 2406 0 4 877 1186 56 0 0 chr1 38279503 38279645 -158915787 + B1_Mus1 SINE Alu 1 142 -6 4 877 222 222 44 0 chr1 38279777 38279822 -158915610 + PB1D7 SINE Alu 4 50 -70 4 877 236 396 33 33 chr1 38281052 38281232 -158914200 + L2c LINE L2 3040 3219 -168 4 877 255 211 207 73 chr1 38281959 38282041 -158913391 - B3A SINE B2 -105 93 1 4 877 330 281 35 28 chr1 38282070 38282213 -158913219 - L1MD2 LINE L1 -19 6223 6080 4 877 616 282 134 0 chr1 38282536 38282580 -158912852 - L1MD2 LINE L1 -499 5860 5797 4 877 2743 25 9 30 chr1 38282580 38282914 -158912518 - IAPLTR2b LTR ERVK 0 327 1 4 877 616 289 52 0 chr1 38282914 38283092 -158912340 - L1MD2 LINE L1 -446 5796 5610 4 877 1151 173 44 19 chr1 38283124 38283330 -158912102 - B3 SINE B2 -1 215 5 4 877 326 245 10 21 chr1 38283519 38283615 -158911817 - L1MA6 LINE L1 -5 6295 6201 5 877 421 281 224 7 chr1 38283749 38284043 -158911389 - L1MDa LINE L1 -4487 2146 1789 5 877 309 51 0 0 chr1 38284102 38284141 -158911291 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 5 877 975 192 16 16 chr1 38284141 38284326 -158911106 - ID_B1 SINE B4 -8 216 32 5 877 509 244 16 166 chr1 38284324 38284511 -158910921 + MTEa LTR MaLR 218 376 -3 5 877 525 261 0 93 chr1 38284522 38284704 -158910728 - L1MDa LINE L1 -4943 1690 1526 5 877 216 0 0 0 chr1 38285249 38285273 -158910159 + (ATG)n Simple_repeat Simple_repeat 2 25 0 5 877 243 0 0 0 chr1 38286214 38286241 -158909191 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 5 877 424 303 81 53 chr1 38288057 38288266 -158907166 + MIRb SINE MIR 31 245 -23 5 877 241 247 50 38 chr1 38288374 38288454 -158906978 - ID4 SINE ID 0 83 3 5 877 3452 137 46 11 chr1 38289372 38289934 -158905498 + RMER13B LTR ERVK 1 582 -326 5 877 270 230 154 39 chr1 38290247 38290351 -158905081 + MLT1A LTR MaLR 259 374 0 5 877 224 274 48 0 chr1 38290457 38290519 -158904913 + MIR3 SINE MIR 103 167 -41 5 877 247 303 60 10 chr1 38291824 38291924 -158903508 - MER45C DNA Tip100 -26 927 823 5 877 335 380 29 0 chr1 38291973 38292110 -158903322 - MER45C DNA Tip100 -403 550 410 5 877 253 296 306 6 chr1 38292164 38292344 -158903088 - MER45C DNA Tip100 -642 311 78 5 877 432 0 0 0 chr1 38293240 38293288 -158902144 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 877 423 0 0 0 chr1 38293288 38293334 -158902098 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 877 198 103 0 0 chr1 38293546 38293575 -158901857 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 5 877 581 275 76 0 chr1 38293611 38293782 -158901650 - B3A SINE B2 -14 184 1 5 877 341 190 37 25 chr1 38294815 38294896 -158900536 - ID2 SINE ID 0 83 2 5 877 630 286 40 0 chr1 38295000 38295175 -158900257 - MLT1A LTR MaLR 0 374 193 5 877 325 307 9 65 chr1 38295212 38295320 -158900112 - MLT1A LTR MaLR -254 120 19 5 877 297 68 0 0 chr1 38295676 38295720 -158899712 + (T)n Simple_repeat Simple_repeat 1 44 0 5 877 268 178 0 0 chr1 38295773 38295818 -158899614 - L1M4 LINE L1 -641 5537 5493 5 877 351 60 0 0 chr1 38296466 38296516 -158898916 + (CACG)n Simple_repeat Simple_repeat 2 51 0 5 877 200 286 8 110 chr1 38296853 38296971 -158898461 - L2c LINE L2 -230 3157 3052 5 877 369 0 0 0 chr1 38296973 38297014 -158898418 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 877 303 324 21 35 chr1 38297794 38297938 -158897494 + MIRb SINE MIR 93 234 -34 5 877 655 268 139 16 chr1 38299371 38299629 -158895803 + B4 SINE B4 2 291 -1 5 877 287 49 24 0 chr1 38300633 38300674 -158894758 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 877 196 324 97 26 chr1 38302985 38303099 -158892333 - L3 LINE CR1 -145 4344 4223 5 877 693 164 0 0 chr1 38303099 38303258 -158892174 + (TTCA)n Simple_repeat Simple_repeat 3 161 0 5 877 241 308 102 42 chr1 38303419 38303513 -158891919 + MIRb SINE MIR 46 140 -128 5 877 180 0 0 0 chr1 38303513 38303533 -158891899 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 877 241 308 102 42 chr1 38303533 38303604 -158891828 + MIRb SINE MIR 141 220 -48 5 877 225 196 0 0 chr1 38304732 38304778 -158890654 + T-rich Low_complexity Low_complexity 2 47 0 5 877 264 30 0 0 chr1 38305516 38305549 -158889883 + (CAAAT)n Simple_repeat Simple_repeat 2 34 0 5 877 381 117 0 0 chr1 38306047 38306107 -158889325 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 877 965 275 159 9 chr1 38306366 38306693 -158888739 + MTEa LTR MaLR 1 376 -3 5 877 406 83 0 32 chr1 38307027 38307089 -158888343 - B1F1 SINE Alu 0 149 90 5 877 684 183 38 0 chr1 38307091 38307222 -158888210 + B1_Mur1 SINE Alu 1 136 -13 5 877 279 329 46 23 chr1 38307463 38307550 -158887882 - RMER30 DNA MER1_type -107 95 7 5 877 390 222 0 0 chr1 38308654 38308780 -158886652 + CT-rich Low_complexity Low_complexity 2 127 0 5 877 687 97 0 0 chr1 38308780 38308894 -158886538 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 877 634 325 35 49 chr1 38309982 38310270 -158885162 - B4A SINE B4 -6 286 3 5 877 239 29 0 54 chr1 38310312 38310349 -158885083 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 877 481 338 45 54 chr1 38310474 38310696 -158884736 + B4A SINE B4 5 224 -68 5 877 827 195 4 0 chr1 38313766 38314036 -158881396 + GA-rich Low_complexity Low_complexity 1 271 0 5 877 216 0 0 0 chr1 38315719 38315743 -158879689 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 877 767 11 0 11 chr1 38316172 38316265 -158879167 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 877 584 295 48 26 chr1 38316276 38316544 -158878888 - L1MA4 LINE L1 -48 6252 5979 5 877 21 36 0 0 chr1 38318387 38318415 -158877017 + AT_rich Low_complexity Low_complexity 1 28 0 5 877 743 246 34 15 chr1 38321518 38321729 -158873703 + B3A SINE B2 1 216 0 5 877 300 290 11 54 chr1 38322323 38322509 -158872923 + G-rich Low_complexity Low_complexity 2 179 0 5 877 230 338 0 0 chr1 38322860 38322931 -158872501 + PB1D7 SINE Alu 33 103 -17 5 877 413 263 0 32 chr1 38323094 38323279 -158872153 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 877 310 223 104 21 chr1 38323332 38323428 -158872004 - B4A SINE B4 0 292 189 5 877 325 226 115 31 chr1 38323413 38323509 -158871923 + MTE2a LTR MaLR 268 371 -8 5 877 273 151 0 0 chr1 38323773 38323826 -158871606 + CT-rich Low_complexity Low_complexity 3 55 0 5 877 461 342 26 30 chr1 38324077 38324342 -158871090 + Lx8 LINE L1 6962 7225 -248 5 877 222 241 19 0 chr1 38325837 38325891 -158869541 + MamSINE1 SINE tRNA 37 91 -199 5 877 1236 96 0 0 chr1 38325921 38326098 -158869334 + (GGA)n Simple_repeat Simple_repeat 2 178 0 5 877 836 169 9 0 chr1 38326100 38326309 -158869123 + GA-rich Low_complexity Low_complexity 1 210 0 5 877 438 261 58 16 chr1 38327777 38327898 -158867534 + MER2 DNA MER2_type 166 291 -54 5 877 358 261 11 22 chr1 38327953 38328043 -158867389 + MER2 DNA MER2_type 257 345 0 5 877 543 245 84 28 chr1 38328344 38328487 -158866945 - RSINE1 SINE B4 0 165 15 5 877 778 92 296 7 chr1 38328962 38329104 -158866328 - B2_Mm2 SINE B2 -12 183 1 5 877 2001 237 22 0 chr1 38329619 38330020 -158865412 - MTD LTR MaLR -8 411 2 5 877 456 297 16 21 chr1 38330026 38330212 -158865220 + Lx7 LINE L1 7187 7371 -325 5 877 272 27 27 0 chr1 38330218 38330255 -158865177 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 877 1125 298 66 62 chr1 38330490 38331015 -158864417 + MLT1F2 LTR MaLR 32 544 -5 5 877 1242 48 0 0 chr1 38331155 38331302 -158864130 + B1_Mm SINE Alu 1 147 0 5 877 560 285 24 18 chr1 38333123 38333291 -158862141 - MER5B DNA MER1_type -9 169 1 5 877 193 319 63 11 chr1 38333491 38333586 -158861846 - MER5B DNA MER1_type -36 142 43 5 877 308 308 101 139 chr1 38333734 38333804 -158861628 + MLT1A0 LTR MaLR 87 153 -212 5 877 308 261 0 0 chr1 38333804 38333873 -158861559 + ID4_ SINE ID 2 70 -13 5 877 308 308 101 139 chr1 38333873 38334089 -158861343 + MLT1A0 LTR MaLR 154 362 -3 5 877 1210 54 0 0 chr1 38334429 38334576 -158860856 - B1_Mm SINE Alu 0 147 1 5 877 873 347 26 53 chr1 38334824 38335277 -158860155 + LTR33B LTR ERVL 56 496 -7 5 877 275 314 41 36 chr1 38335334 38335532 -158859900 + MIR SINE MIR 58 262 -6 5 877 298 331 78 19 chr1 38336011 38336200 -158859232 + ORR1E LTR MaLR 1 203 -167 5 877 256 167 50 0 chr1 38336256 38336316 -158859116 + MTEb LTR MaLR 317 379 0 5 877 263 250 0 30 chr1 38336465 38336531 -158858901 + B4A SINE B4 79 142 -150 5 877 365 70 0 17 chr1 38336562 38336620 -158858812 + (AGGGGG)n Simple_repeat Simple_repeat 3 59 0 5 877 418 216 0 49 chr1 38336620 38336722 -158858710 + ID_B1 SINE B4 120 216 -8 5 877 243 152 65 0 chr1 38336682 38336728 -158858704 + PB1D7 SINE Alu 70 118 -2 5 877 183 80 0 0 chr1 38337186 38337211 -158858221 + (A)n Simple_repeat Simple_repeat 1 25 0 5 877 350 326 119 5 chr1 38338558 38338752 -158856680 - B4A SINE B4 -76 216 1 5 877 255 300 152 6 chr1 38339507 38339678 -158855754 + Tigger5 DNA MER2_type 2144 2339 -67 5 877 242 277 121 0 chr1 38339839 38339922 -158855510 - PB1D7 SINE Alu -14 106 14 5 877 739 316 78 35 chr1 38339923 38340411 -158855021 - L1MC3 LINE L1 -203 7582 7074 5 877 232 250 65 13 chr1 38340499 38340576 -158854856 - ID4 SINE ID -2 81 1 5 877 703 322 37 73 chr1 38340666 38341075 -158854357 + Lx8 LINE L1 6894 7287 -186 5 877 387 0 0 0 chr1 38344695 38344738 -158850694 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 877 376 190 7 55 chr1 38345211 38345356 -158850076 + A-rich Low_complexity Low_complexity 4 141 0 5 877 634 278 66 9 chr1 38345830 38346041 -158849391 + ID_B1 SINE B4 2 224 0 5 877 297 128 0 0 chr1 38346041 38346088 -158849344 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 5 877 272 250 83 0 chr1 38346182 38346278 -158849154 - Charlie5 DNA MER1_type 0 2624 2521 5 877 488 320 101 4 chr1 38346292 38346549 -158848883 + MER2 DNA MER2_type 17 298 -47 5 877 21 36 0 0 chr1 38346581 38346609 -158848823 + AT_rich Low_complexity Low_complexity 1 28 0 5 877 307 307 137 38 chr1 38346725 38346908 -158848524 - ID_B1 SINE B4 -8 216 16 5 877 236 259 17 0 chr1 38346925 38346983 -158848449 - Charlie5 DNA MER1_type -2567 57 1 5 877 1021 274 40 4 chr1 38348029 38348304 -158847128 - B4 SINE B4 -2 290 6 5 877 553 292 54 39 chr1 38350299 38350517 -158844915 - B3A SINE B2 -12 204 1 5 877 975 237 76 45 chr1 38351843 38352235 -158843197 - Lx3B LINE L1 -2042 5743 5357 5 877 897 34 0 0 chr1 38353091 38353209 -158842223 + B1_Mus2 SINE Alu 29 146 -1 5 877 378 0 0 0 chr1 38353209 38353251 -158842181 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 877 1648 180 26 124 chr1 38353342 38353768 -158841664 - ORR1C2 LTR MaLR 0 384 1 5 877 253 382 108 33 chr1 38353970 38354083 -158841349 + Tigger7 DNA MER2_type 5 115 -2376 6 877 1105 50 28 7 chr1 38354083 38354225 -158841207 - B1_Mus2 SINE Alu -1 146 2 6 877 709 311 42 26 chr1 38354225 38354617 -158840815 + Tigger7 DNA MER2_type 2229 2483 -8 6 877 545 223 5 0 chr1 38355780 38356012 -158839420 + (CA)n Simple_repeat Simple_repeat 1 233 0 6 877 335 248 82 9 chr1 38356039 38356149 -158839283 - Lx9 LINE L1 -1755 5889 5772 6 877 22894 14 0 14 chr1 38356163 38359585 -158835847 + L1Md_A LINE L1 440 3819 -2064 6 877 2789 19 3 0 chr1 38359585 38359904 -158835528 + L1Md_A LINE L1 6262 6581 -1 6 877 22894 13 0 4 chr1 38359904 38359932 -158835500 + L1Md_A LINE L1 3820 3838 -2045 6 877 304 241 25 0 chr1 38359914 38359993 -158835439 - Lx8 LINE L1 -1702 5771 5691 6 877 235 326 79 0 chr1 38360001 38360090 -158835342 - ID_B1 SINE B4 0 224 129 6 877 276 284 52 10 chr1 38360021 38360117 -158835315 - B1F SINE Alu -28 121 22 6 877 428 217 45 36 chr1 38360194 38360304 -158835128 - PB1 SINE Alu -8 119 9 6 877 234 128 0 0 chr1 38360338 38360377 -158835055 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 6 877 843 251 82 30 chr1 38360438 38360705 -158834727 - B4A SINE B4 -6 286 6 6 877 741 122 0 0 chr1 38362088 38362203 -158833229 + (TC)n Simple_repeat Simple_repeat 2 116 0 6 877 216 0 0 0 chr1 38362286 38362310 -158833122 + (T)n Simple_repeat Simple_repeat 1 24 0 6 877 232 234 0 0 chr1 38362357 38362404 -158833028 + CT-rich Low_complexity Low_complexity 1 47 0 6 877 821 199 32 16 chr1 38362475 38362664 -158832768 + MER53 DNA hAT 2 193 0 6 877 773 208 84 25 chr1 38364155 38364357 -158831075 + B3 SINE B2 3 216 0 6 877 1319 137 0 5 chr1 38365887 38366100 -158829332 + URR1B DNA MER1_type 12 223 -2 6 877 399 271 38 83 chr1 38366364 38366521 -158828911 + B4 SINE B4 2 151 -141 6 877 240 35 0 0 chr1 38367239 38367268 -158828164 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6 877 396 288 88 35 chr1 38368582 38368947 -158826485 - L1M5 LINE L1 -633 5540 5166 6 877 233 115 130 37 chr1 38369360 38369414 -158826018 - L1M5 LINE L1 -1362 4784 4726 6 877 308 330 80 63 chr1 38369484 38369785 -158825647 - L1MC LINE L1 -1958 4188 3883 6 877 253 221 39 0 chr1 38369808 38369885 -158825547 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 877 836 179 0 28 chr1 38369888 38370032 -158825400 - B1_Mus1 SINE Alu -6 142 3 6 877 239 204 0 0 chr1 38370199 38370243 -158825189 - L1M4 LINE L1 -2476 3664 3621 6 877 1476 60 16 0 chr1 38370317 38370502 -158824930 - B2_Mm2 SINE B2 -7 188 1 6 877 424 325 166 23 chr1 38370537 38370934 -158824498 - L1MD LINE L1 -2610 3536 3083 6 877 616 232 61 22 chr1 38371015 38371197 -158824235 - B3A SINE B2 -6 210 22 6 877 278 317 96 67 chr1 38371738 38372113 -158823319 - L1M4 LINE L1 -3648 2498 2113 6 877 334 186 0 0 chr1 38372591 38372661 -158822771 - MTC LTR MaLR -351 70 1 6 877 580 164 52 0 chr1 38372666 38372782 -158822650 - B3A SINE B2 -76 122 1 6 877 380 271 66 22 chr1 38373540 38373676 -158821756 - B1_Mur3 SINE Alu -2 147 6 6 877 502 305 84 81 chr1 38373916 38374273 -158821159 - ORR1E LTR MaLR 0 359 2 6 877 512 304 115 71 chr1 38374273 38374654 -158820778 + MLT1C LTR MaLR 55 452 -15 6 877 201 279 14 14 chr1 38374865 38374934 -158820498 + (TATG)n Simple_repeat Simple_repeat 3 71 0 6 877 604 204 0 55 chr1 38376150 38376295 -158819137 - B4 SINE B4 -66 226 90 6 877 225 0 0 0 chr1 38377163 38377188 -158818244 + (A)n Simple_repeat Simple_repeat 1 25 0 6 877 203 189 0 0 chr1 38379066 38379103 -158816329 + T-rich Low_complexity Low_complexity 1 37 0 6 877 315 0 0 0 chr1 38379555 38379590 -158815842 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 877 432 318 43 65 chr1 38379605 38379743 -158815689 - RSINE1 SINE B4 -15 150 16 6 877 507 163 50 19 chr1 38379743 38380009 -158815423 + (TCTA)n Simple_repeat Simple_repeat 1 274 0 6 877 502 243 182 0 chr1 38381113 38381294 -158814138 - B3 SINE B2 -2 214 1 6 877 391 310 67 45 chr1 38382752 38383083 -158812349 - L1M5 LINE L1 -2167 3979 3642 6 877 40 0 0 0 chr1 38383227 38383267 -158812165 + AT_rich Low_complexity Low_complexity 1 40 0 6 877 28 61 0 0 chr1 38383299 38383348 -158812084 + AT_rich Low_complexity Low_complexity 1 49 0 6 877 1030 163 20 31 chr1 38383941 38384137 -158811295 - B2_Mm2 SINE B2 -1 194 1 6 877 32 0 0 0 chr1 38384211 38384243 -158811189 + AT_rich Low_complexity Low_complexity 1 32 0 6 877 530 327 45 30 chr1 38386962 38387296 -158808136 - L1MB5 LINE L1 -8 6166 5828 6 877 254 348 0 33 chr1 38387384 38387476 -158807956 - PB1D10 SINE Alu -16 101 13 6 877 4153 118 43 1 chr1 38387477 38388190 -158807242 + RMER6A LTR ERVK 1 743 -13 6 877 557 301 130 59 chr1 38388269 38388937 -158806495 - L1MB5 LINE L1 -455 5719 5008 6 877 234 310 141 76 chr1 38390581 38390843 -158804589 - B4 SINE B4 -12 280 2 6 877 261 283 17 78 chr1 38392067 38392182 -158803250 + MTEa LTR MaLR 1 108 -271 6 877 29 28 0 0 chr1 38392284 38392320 -158803112 + AT_rich Low_complexity Low_complexity 1 36 0 6 877 472 255 17 69 chr1 38392324 38392497 -158802935 - RSINE1 SINE B4 0 165 2 6 877 276 326 106 40 chr1 38393664 38393862 -158801570 + MLT1D LTR MaLR 1 211 -294 6 877 372 231 33 101 chr1 38394444 38394591 -158800841 - L1MA9 LINE L1 -284 6007 5873 6 877 268 95 0 0 chr1 38394923 38394965 -158800467 + RMER16-int LTR ERVK 2068 2109 -3297 6 877 4158 65 6 0 chr1 38395000 38395520 -158799912 - L1_Mus1 LINE L1 0 6567 6045 6 877 3264 47 44 2 chr1 38395520 38395929 -158799503 + L1_Mus1 LINE L1 5597 6022 -545 6 877 385 255 48 10 chr1 38395929 38396032 -158799400 - RSINE1 SINE B4 -45 120 14 6 877 317 320 0 10 chr1 38396564 38396668 -158798764 - PB1 SINE Alu 0 127 25 6 877 273 183 49 16 chr1 38397131 38397192 -158798240 + L1M5 LINE L1 5406 5468 -726 6 877 315 236 0 0 chr1 38397528 38397600 -158797832 + ID2 SINE ID 1 72 -11 6 877 345 47 0 0 chr1 38397637 38397680 -158797752 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 6 877 922 184 117 19 chr1 38398139 38398344 -158797088 + URR1B DNA MER1_type 1 225 0 6 877 344 141 58 52 chr1 38399810 38400026 -158795406 + (TA)n Simple_repeat Simple_repeat 1 217 0 6 877 3179 252 79 31 chr1 38402474 38403422 -158792010 + Lx7 LINE L1 6317 7327 -146 6 877 453 90 0 0 chr1 38403422 38403489 -158791943 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 877 2037 322 102 25 chr1 38403489 38403588 -158791844 + Lx7 LINE L1 7328 7445 -28 6 877 440 248 16 16 chr1 38403809 38403932 -158791500 - Tigger7 DNA MER2_type 0 2491 2369 6 877 376 288 23 23 chr1 38403940 38404068 -158791364 + Lx8 LINE L1 7059 7186 -287 6 878 30 45 0 0 chr1 38406009 38406053 -158789379 + AT_rich Low_complexity Low_complexity 1 44 0 6 878 25 0 0 0 chr1 38406331 38406356 -158789076 + AT_rich Low_complexity Low_complexity 1 25 0 6 878 211 260 61 61 chr1 38406972 38407054 -158788378 + MIRb SINE MIR 184 265 -3 6 878 714 285 129 20 chr1 38407868 38408162 -158787270 - MER44C DNA MER2_type -2165 326 1 6 878 798 176 71 0 chr1 38408759 38408929 -158786503 + Lx5 LINE L1 6861 7042 -8 6 878 693 265 174 0 chr1 38409400 38409687 -158785745 + L1M2 LINE L1 3823 4159 -1984 6 878 21 0 0 0 chr1 38410257 38410278 -158785154 + AT_rich Low_complexity Low_complexity 1 21 0 6 878 620 296 52 24 chr1 38410550 38410799 -158784633 - B4A SINE B4 -8 284 29 6 878 387 105 0 0 chr1 38411879 38411936 -158783496 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 878 1197 71 0 0 chr1 38413660 38413829 -158781603 + (GGGAA)n Simple_repeat Simple_repeat 5 173 0 6 878 318 241 0 0 chr1 38414438 38414546 -158780886 + GA-rich Low_complexity Low_complexity 2 109 0 6 878 189 0 0 0 chr1 38415481 38415502 -158779930 + (GA)n Simple_repeat Simple_repeat 1 21 0 6 878 799 229 96 5 chr1 38416848 38417046 -158778386 + B3 SINE B2 1 216 0 6 878 261 0 0 0 chr1 38417069 38417098 -158778334 + (CATA)n Simple_repeat Simple_repeat 1 29 0 6 878 267 31 0 0 chr1 38417176 38417208 -158778224 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 6 878 313 287 19 19 chr1 38417346 38417506 -158777926 - L1M4 LINE L1 -2132 4014 3855 6 878 300 222 0 0 chr1 38417661 38417733 -158777699 + L1MA5 LINE L1 6207 6278 -22 6 878 196 258 120 30 chr1 38418255 38418355 -158777077 + L2b LINE L2 1818 1926 -1493 6 878 585 331 106 25 chr1 38418762 38419209 -158776223 + L2b LINE L2 2656 3148 -227 6 878 405 265 50 50 chr1 38419426 38419605 -158775827 - L1M1 LINE L1 -516 5784 5606 6 878 321 221 9 103 chr1 38422130 38422246 -158773186 + MT2B LTR ERVL 160 264 -337 6 878 820 89 8 0 chr1 38422146 38422270 -158773162 + B1_Mus1 SINE Alu 13 137 -11 6 878 243 0 0 0 chr1 38422270 38422297 -158773135 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 878 941 168 6 0 chr1 38422534 38422713 -158772719 + CT-rich Low_complexity Low_complexity 1 180 0 6 878 233 234 84 11 chr1 38423717 38423812 -158771620 + MIRb SINE MIR 60 161 -107 6 878 396 0 0 0 chr1 38423917 38423961 -158771471 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 878 470 260 119 35 chr1 38423999 38424226 -158771206 + MER44A DNA MER2_type 29 274 -65 6 878 428 292 46 75 chr1 38426730 38426904 -158768528 + MER20 DNA MER1_type 42 210 -9 6 878 402 272 142 47 chr1 38426916 38427190 -158768242 + L1ME2z LINE L1 5615 5914 -264 6 878 310 335 73 9 chr1 38427386 38427606 -158767826 - L1M5 LINE L1 -3227 2919 2686 6 878 292 247 151 24 chr1 38427665 38427831 -158767601 - L1MD LINE L1 -3469 2677 2491 6 878 21 0 0 0 chr1 38428454 38428475 -158766957 + AT_rich Low_complexity Low_complexity 1 21 0 6 878 225 65 0 0 chr1 38428722 38428753 -158766679 + (CAA)n Simple_repeat Simple_repeat 1 31 0 6 878 2413 201 49 12 chr1 38430625 38431133 -158764299 + Lx9 LINE L1 6527 7053 -591 6 878 358 308 50 12 chr1 38431290 38431451 -158763981 + L1MEc LINE L1 100 266 -6134 7 878 455 288 93 60 chr1 38431711 38431959 -158763473 + L1MA4 LINE L1 5676 5931 -360 7 878 422 189 9 0 chr1 38431983 38432089 -158763343 + (TA)n Simple_repeat Simple_repeat 2 108 0 7 878 192 125 0 0 chr1 38432089 38432121 -158763311 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 878 310 278 25 50 chr1 38432328 38432449 -158762983 + L1MEc LINE L1 635 752 -5648 7 878 461 236 71 22 chr1 38432844 38433026 -158762406 + L1MEc LINE L1 1294 1484 -4916 7 878 298 253 147 40 chr1 38433039 38433216 -158762216 + L1MD LINE L1 5488 5683 -559 7 878 276 30 0 0 chr1 38433218 38433251 -158762181 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 878 229 255 0 0 chr1 38433251 38433298 -158762134 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 878 236 156 22 0 chr1 38433303 38433348 -158762084 + L1M5 LINE L1 5787 5832 -347 7 878 232 182 0 0 chr1 38434110 38434154 -158761278 + L1MA10 LINE L1 6278 6321 -13 7 878 4765 112 18 35 chr1 38434729 38435552 -158759880 + RMER17D2 LTR ERVK 1 809 0 7 878 534 193 101 0 chr1 38436587 38436696 -158758736 + B3A SINE B2 1 120 -78 7 878 304 315 120 33 chr1 38437176 38437360 -158758072 + Lx8 LINE L1 7178 7377 -96 7 878 249 146 0 0 chr1 38438108 38438156 -158757276 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 878 443 270 130 82 chr1 38438787 38439057 -158756375 - L1MA5 LINE L1 -31 6269 5987 7 878 413 250 6 119 chr1 38439092 38439172 -158756260 - L1MA5 LINE L1 -284 6013 5952 7 878 741 142 46 72 chr1 38439172 38439324 -158756108 - B1_Mus1 SINE Alu 0 148 1 7 878 413 250 6 119 chr1 38439324 38439420 -158756012 - L1MA5 LINE L1 -346 5951 5857 7 878 438 20 0 0 chr1 38439420 38439471 -158755961 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 878 378 0 0 0 chr1 38439471 38439512 -158755920 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 878 516 279 60 15 chr1 38439513 38439713 -158755719 - L1MA5 LINE L1 -621 5679 5471 7 878 897 306 48 0 chr1 38440265 38440513 -158754919 - B4 SINE B4 -6 286 27 7 878 402 332 237 8 chr1 38440788 38441166 -158754266 + LTR53 LTR ERVL 28 492 -27 7 878 672 13 0 0 chr1 38442045 38442122 -158753310 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 7 878 315 290 206 16 chr1 38444657 38444858 -158750574 - MLT1D LTR MaLR -6 499 261 7 878 393 342 114 26 chr1 38445185 38445413 -158750019 - MIRc SINE MIR -3 265 18 7 878 439 196 46 119 chr1 38445779 38445930 -158749502 + MT2B LTR ERVL 139 278 -323 7 878 1069 92 0 0 chr1 38445814 38445956 -158749476 + B1_Mus1 SINE Alu 6 147 -1 7 878 452 73 29 0 chr1 38445958 38446026 -158749406 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 7 878 369 0 0 0 chr1 38448053 38448094 -158747338 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 878 216 0 0 0 chr1 38448094 38448117 -158747315 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 878 1161 77 0 0 chr1 38448299 38448442 -158746990 + B1_Mus2 SINE Alu 5 147 0 7 878 22 0 0 0 chr1 38448547 38448569 -158746863 + AT_rich Low_complexity Low_complexity 1 22 0 7 878 273 57 0 0 chr1 38450819 38450854 -158744578 + (A)n Simple_repeat Simple_repeat 1 35 0 7 878 617 305 55 0 chr1 38451181 38451345 -158744087 - MER2B DNA MER2_type 0 336 164 7 878 333 47 0 0 chr1 38453975 38454018 -158741414 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 7 878 237 288 15 0 chr1 38454573 38454639 -158740793 + GA-rich Low_complexity Low_complexity 3 69 0 7 878 261 0 0 0 chr1 38455222 38455251 -158740181 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 878 763 209 153 16 chr1 38456527 38456582 -158738850 - B3 SINE B2 0 216 163 7 878 288 0 0 0 chr1 38456582 38456614 -158738818 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 878 763 209 153 16 chr1 38456614 38456748 -158738684 - B3 SINE B2 -54 162 3 7 878 405 247 0 0 chr1 38456849 38456930 -158738502 + ID4_ SINE ID 1 81 -2 7 878 343 271 143 8 chr1 38457111 38457230 -158738202 - L1MA6 LINE L1 -114 6186 6052 7 878 594 0 0 0 chr1 38457270 38457336 -158738096 + (GAA)n Simple_repeat Simple_repeat 2 67 0 7 878 245 51 26 0 chr1 38462364 38462403 -158733029 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 7 878 226 320 59 10 chr1 38464599 38464700 -158730732 - PB1D10 SINE Alu -9 108 3 7 878 1160 257 44 31 chr1 38465449 38465770 -158729662 + Lx9 LINE L1 7141 7465 -179 7 878 468 0 0 0 chr1 38465777 38465829 -158729603 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 878 208 373 46 25 chr1 38466380 38466582 -158728850 - MIRc SINE MIR -4 204 3 7 878 504 372 43 0 chr1 38468626 38468814 -158726618 + B4A SINE B4 47 242 -50 7 878 1085 25 0 0 chr1 38468814 38468936 -158726496 - L1Md_A LINE L1 -476 6106 5985 7 878 4005 13 7 0 chr1 38468936 38469386 -158726046 + L1Md_A LINE L1 6130 6582 0 7 878 186 43 0 0 chr1 38469392 38469415 -158726017 + (A)n Simple_repeat Simple_repeat 1 23 0 7 878 1045 252 46 63 chr1 38471099 38471383 -158724049 - MTD LTR MaLR 0 419 141 7 878 189 0 0 0 chr1 38471492 38471513 -158723919 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 878 746 262 0 7 chr1 38471515 38471665 -158723767 - B3A SINE B2 -49 149 1 7 878 268 317 103 17 chr1 38471848 38471996 -158723436 + MIR SINE MIR 106 268 0 7 878 186 348 69 21 chr1 38472245 38472389 -158723043 - L2a LINE L2 -50 3376 3226 7 878 1407 244 116 6 chr1 38472476 38472831 -158722601 + MTD LTR MaLR 18 411 -8 7 878 210 37 0 0 chr1 38473574 38473601 -158721831 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 878 183 235 167 36 chr1 38475704 38475788 -158719644 - MIRb SINE MIR -39 229 135 7 878 2174 197 57 8 chr1 38476165 38476636 -158718796 + L1_Mur3 LINE L1 5297 5790 -90 7 878 291 218 163 15 chr1 38476641 38476776 -158718656 + Lx7 LINE L1 7537 7691 -5 7 878 405 254 21 113 chr1 38477016 38477158 -158718274 - Lx7 LINE L1 -1010 6686 6558 7 878 228 365 48 0 chr1 38477388 38477492 -158717940 + PB1 SINE Alu 2 110 -17 7 878 405 0 0 0 chr1 38478118 38478163 -158717269 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 878 244 281 56 46 chr1 38479070 38479178 -158716254 + MER5B DNA MER1_type 30 138 -40 7 878 225 0 0 0 chr1 38479399 38479424 -158716008 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 878 513 242 157 96 chr1 38479425 38479622 -158715810 + B3 SINE B2 8 216 0 7 878 250 269 90 0 chr1 38483957 38484035 -158711397 + L3 LINE CR1 3631 3715 -774 7 878 1058 260 53 70 chr1 38484289 38484648 -158710784 + MTEa LTR MaLR 1 353 -26 7 878 21 0 0 0 chr1 38486130 38486151 -158709281 + AT_rich Low_complexity Low_complexity 1 21 0 7 878 309 247 25 25 chr1 38486876 38486955 -158708477 - RSINE1 SINE B4 -30 135 57 7 878 180 259 18 36 chr1 38487935 38487991 -158707441 + L3 LINE CR1 3379 3433 -1056 7 878 21 0 0 0 chr1 38488552 38488573 -158706859 + AT_rich Low_complexity Low_complexity 1 21 0 7 878 389 183 0 21 chr1 38488950 38489045 -158706387 + GA-rich Low_complexity Low_complexity 3 95 0 7 878 351 304 118 0 chr1 38489182 38489317 -158706115 + MER2 DNA MER2_type 113 263 -82 7 878 250 352 172 27 chr1 38490117 38490639 -158704793 + L2 LINE L2 1956 2553 -866 7 878 304 339 120 39 chr1 38490710 38490968 -158704464 + L2 LINE L2 2777 3055 -364 7 878 471 18 0 0 chr1 38491827 38491883 -158703549 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 878 35 0 0 0 chr1 38492594 38492629 -158702803 + AT_rich Low_complexity Low_complexity 1 35 0 7 878 201 267 75 75 chr1 38492643 38492789 -158702643 - L4 LINE RTE -1572 457 312 7 878 381 265 141 47 chr1 38494822 38495098 -158700334 - RMER12 LTR ERVK -334 988 770 7 878 522 231 0 0 chr1 38495098 38495241 -158700191 + (CA)n Simple_repeat Simple_repeat 2 144 0 7 878 276 30 0 0 chr1 38496877 38496910 -158698522 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 878 334 269 0 21 chr1 38498875 38498970 -158696462 + L1MA6 LINE L1 6180 6272 -28 7 878 387 0 0 0 chr1 38500969 38501012 -158694420 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 878 1072 215 0 22 chr1 38501600 38501824 -158693608 - URR1A DNA MER1_type -1 225 7 2 878 228 67 0 0 chr1 38501907 38501937 -158693495 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 878 1037 141 0 0 chr1 38501948 38502097 -158693335 - B1_Mur4 SINE Alu 0 150 2 4 878 314 312 52 10 chr1 38503307 38503404 -158692028 - Arthur1A DNA Tip100 -72 105 5 5 878 243 268 180 50 chr1 38503801 38504001 -158691431 + MER2 DNA MER2_type 120 345 0 6 878 536 308 124 40 chr1 38504653 38505079 -158690353 - MER74A LTR ERVL -69 489 28 7 878 190 283 33 0 chr1 38505336 38505396 -158690036 - MIRb SINE MIR -156 112 51 8 878 486 241 103 20 chr1 38505539 38505734 -158689698 - Lx9 LINE L1 -215 7429 7219 9 878 286 265 57 89 chr1 38508093 38508217 -158687215 - Lx8 LINE L1 -680 6793 6674 1 878 1060 241 134 50 chr1 38508202 38508679 -158686753 + Lx8 LINE L1 6777 7293 -180 1 878 23 0 0 0 chr1 38508787 38508810 -158686622 + AT_rich Low_complexity Low_complexity 1 23 0 1 878 265 171 57 0 chr1 38509084 38509172 -158686260 + CT-rich Low_complexity Low_complexity 1 93 0 1 878 669 67 0 62 chr1 38509942 38510047 -158685385 + B1_Mus2 SINE Alu 38 137 -10 1 878 225 0 0 0 chr1 38510047 38510072 -158685360 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 878 288 0 0 0 chr1 38510852 38510884 -158684548 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 878 300 27 0 0 chr1 38510884 38510920 -158684512 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 878 3519 35 136 0 chr1 38512917 38513351 -158682081 - MT2_Mm LTR ERVL 0 493 1 1 878 243 264 74 19 chr1 38514708 38514816 -158680616 - MIRc SINE MIR -109 159 46 1 878 569 317 22 11 chr1 38516085 38516267 -158679165 - B3 SINE B2 0 216 33 1 878 389 340 129 11 chr1 38516841 38517221 -158678211 + L1MC4 LINE L1 6720 7144 -898 2 878 423 0 0 0 chr1 38518834 38518881 -158676551 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 878 283 252 50 58 chr1 38520338 38520477 -158674955 + L1ME2 LINE L1 3153 3290 -2856 2 878 290 26 26 0 chr1 38520581 38520620 -158674812 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 878 362 300 121 22 chr1 38521071 38521344 -158674088 + L1MD3 LINE L1 7609 7908 -87 2 878 345 259 67 33 chr1 38521369 38521489 -158673943 + Tigger5 DNA MER2_type 14 137 -2269 2 878 354 138 0 0 chr1 38521535 38521593 -158673839 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 878 183 100 0 0 chr1 38521794 38521824 -158673608 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 878 310 299 184 29 chr1 38521921 38522400 -158673032 + L1ME2 LINE L1 5440 5992 -172 2 878 650 292 212 29 chr1 38523752 38524101 -158671331 - Lx8 LINE L1 -11 7462 7050 2 878 342 215 0 0 chr1 38525304 38525383 -158670049 + (TATG)n Simple_repeat Simple_repeat 2 80 0 2 878 393 304 17 69 chr1 38526629 38526802 -158668630 - RSINE1 SINE B4 0 165 2 3 878 247 80 60 0 chr1 38526857 38526907 -158668525 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 3 878 213 240 20 0 chr1 38527980 38528030 -158667402 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 878 2988 63 8 0 chr1 38528097 38528478 -158666954 + L1Md_F2 LINE L1 6199 6582 0 3 878 1084 187 59 30 chr1 38531465 38531735 -158663697 - MER44A DNA MER2_type -39 300 23 3 879 245 183 0 16 chr1 38536147 38536208 -158659224 + GA-rich Low_complexity Low_complexity 2 61 0 3 879 721 331 52 52 chr1 38536218 38536291 -158659141 + MLT2D LTR ERVL 14 86 -328 3 879 306 125 0 0 chr1 38536291 38536339 -158659093 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 879 721 331 52 52 chr1 38536339 38536609 -158658823 + MLT2D LTR ERVL 87 356 -58 3 879 1667 37 0 0 chr1 38536805 38536995 -158658437 - B2_Mm1a SINE B2 -2 191 2 3 879 432 0 0 0 chr1 38537838 38537886 -158657546 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 879 1155 259 104 13 chr1 38539297 38539681 -158655751 - MTD LTR MaLR 0 419 1 4 879 345 218 42 125 chr1 38539896 38540064 -158655368 + Lx7 LINE L1 6123 6276 -1197 4 879 478 285 46 0 chr1 38542916 38543067 -158652365 + RSINE1 SINE B4 3 160 -5 4 879 248 186 0 17 chr1 38543081 38543141 -158652291 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 879 387 0 0 0 chr1 38545377 38545420 -158650012 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 879 193 351 35 26 chr1 38547216 38547330 -158648102 - MIRm SINE MIR -3 273 159 4 879 25 0 0 0 chr1 38547474 38547499 -158647933 + AT_rich Low_complexity Low_complexity 1 25 0 4 879 243 235 0 14 chr1 38548069 38548138 -158647294 - B3A SINE B2 -125 73 6 4 879 286 247 43 33 chr1 38548276 38548368 -158647064 - B1F1 SINE Alu -56 93 1 4 879 245 130 22 0 chr1 38549329 38549375 -158646057 + RLTR16 LTR ERVK 1 47 -458 4 879 351 304 106 55 chr1 38549411 38549759 -158645673 + L1MDa LINE L1 1588 1953 -4680 5 879 485 224 8 25 chr1 38549943 38550062 -158645370 + B1_Mur1 SINE Alu 32 148 -1 5 879 335 298 59 7 chr1 38551074 38551226 -158644206 + L1MD1 LINE L1 6027 6186 -56 5 879 359 228 38 26 chr1 38551543 38551637 -158643795 + B1F SINE Alu 33 116 -1 5 879 29 0 0 0 chr1 38551898 38551927 -158643505 + AT_rich Low_complexity Low_complexity 1 29 0 5 879 378 0 0 0 chr1 38552059 38552101 -158643331 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 879 689 266 19 72 chr1 38552162 38552369 -158643063 - B3A SINE B2 -2 196 1 5 879 345 299 41 0 chr1 38552371 38552468 -158642964 - PB1D10 SINE Alu -8 109 9 5 879 280 289 19 37 chr1 38552387 38552495 -158642937 - ID_B1 SINE B4 -53 171 66 5 879 246 364 72 43 chr1 38552579 38552717 -158642715 + MER63A DNA AcHobo 13 154 -56 5 879 210 37 0 0 chr1 38553949 38553976 -158641456 + (CTCG)n Simple_repeat Simple_repeat 2 28 0 6 879 1012 134 6 11 chr1 38554283 38554464 -158640968 + CT-rich Low_complexity Low_complexity 1 180 0 6 879 587 280 151 51 chr1 38555176 38555568 -158639864 - L1MA5 LINE L1 -12 6288 5858 6 879 299 270 22 0 chr1 38556210 38556299 -158639133 + ID_B1 SINE B4 80 170 -54 6 879 305 280 32 0 chr1 38556220 38556313 -158639119 + PB1D10 SINE Alu 10 105 -12 6 879 456 91 0 0 chr1 38557450 38557516 -158637916 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 879 1790 101 76 166 chr1 38560613 38560993 -158634439 + ORR1A1 LTR MaLR 1 346 0 6 879 1295 20 0 0 chr1 38562879 38563026 -158632406 - B1_Mm SINE Alu 0 147 1 6 879 342 312 62 14 chr1 38564274 38564420 -158631012 + MLT1A0 LTR MaLR 213 365 0 6 879 251 211 19 0 chr1 38564849 38564901 -158630531 + C-rich Low_complexity Low_complexity 1 53 0 6 879 314 23 0 23 chr1 38565342 38565386 -158630046 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 7 879 588 258 105 5 chr1 38566214 38566405 -158629027 - B3 SINE B2 -6 210 1 7 879 195 42 0 0 chr1 38568745 38568769 -158626663 + (A)n Simple_repeat Simple_repeat 1 24 0 7 879 237 33 0 0 chr1 38570624 38570654 -158624778 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 7 879 204 150 25 0 chr1 38572408 38572448 -158622984 + CT-rich Low_complexity Low_complexity 3 43 0 7 879 243 152 0 0 chr1 38572501 38572547 -158622885 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 7 879 24 0 0 0 chr1 38574011 38574035 -158621397 + AT_rich Low_complexity Low_complexity 1 24 0 7 879 3147 51 3 0 chr1 38574356 38574746 -158620686 - L1_Mm LINE L1 -491 5392 5002 7 879 466 35 0 49 chr1 38574746 38574798 -158620634 + L1_Mm LINE L1 5520 5569 -314 7 879 8710 19 7 0 chr1 38574798 38575789 -158619643 + L1Md_F3 LINE L1 5587 6584 0 7 879 380 200 11 0 chr1 38576129 38576219 -158619213 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 7 879 28 0 0 0 chr1 38576590 38576618 -158618814 + AT_rich Low_complexity Low_complexity 1 28 0 8 879 7392 102 18 4 chr1 38576735 38577802 -158617630 - L1_Mm LINE L1 -649 5234 4153 8 879 315 0 0 0 chr1 38577850 38577885 -158617547 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 879 2215 153 51 5 chr1 38577939 38578333 -158617099 + MTC LTR MaLR 1 412 -9 8 879 768 294 114 46 chr1 38578546 38579265 -158616167 + L1MA6 LINE L1 5532 6299 -1 8 879 774 128 32 0 chr1 38580081 38580206 -158615226 - B1_Mus2 SINE Alu 0 147 19 8 879 226 303 167 0 chr1 38581347 38581479 -158613953 + L2 LINE L2 2503 2656 -763 8 879 305 300 71 99 chr1 38581577 38581788 -158613644 + ORR1E LTR MaLR 35 239 -120 8 879 204 276 183 14 chr1 38581982 38582195 -158613237 + L2 LINE L2 2743 2991 -428 8 879 1221 116 12 0 chr1 38582352 38582525 -158612907 - B2_Mm2 SINE B2 -19 176 2 8 879 424 252 92 85 chr1 38582570 38582791 -158612641 - B3A SINE B2 0 216 6 8 879 273 128 0 0 chr1 38583893 38583940 -158611492 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 879 288 304 0 21 chr1 38583960 38584054 -158611378 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 879 321 271 0 0 chr1 38584074 38584207 -158611225 + (CA)n Simple_repeat Simple_repeat 2 134 0 9 879 313 237 113 80 chr1 38584225 38584376 -158611056 + HAL1-3A_ME LINE L1 1981 2136 -722 9 879 234 0 0 0 chr1 38585545 38585571 -158609861 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 879 1125 88 0 7 chr1 38586301 38586449 -158608983 - B1_Mus1 SINE Alu 0 148 2 9 879 198 0 0 0 chr1 38587288 38587310 -158608122 + (T)n Simple_repeat Simple_repeat 1 22 0 9 879 258 105 0 0 chr1 38588741 38588779 -158606653 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 9 879 377 228 7 0 chr1 38588998 38589134 -158606298 + (CA)n Simple_repeat Simple_repeat 2 138 0 9 879 261 326 120 0 chr1 38590132 38590224 -158605208 + B3A SINE B2 58 160 -38 9 879 294 73 0 0 chr1 38590229 38590270 -158605162 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 879 699 99 0 0 chr1 38590270 38590370 -158605062 + (GA)n Simple_repeat Simple_repeat 2 102 0 9 879 26 30 0 0 chr1 38590370 38590403 -158605029 + AT_rich Low_complexity Low_complexity 1 33 0 1 879 459 0 0 0 chr1 38592816 38592867 -158602565 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 879 429 36 0 0 chr1 38593242 38593297 -158602135 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 879 308 43 0 21 chr1 38594173 38594220 -158601212 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 879 454 204 17 69 chr1 38597654 38598002 -158597430 + GA-rich Low_complexity Low_complexity 1 329 0 1 879 408 20 0 0 chr1 38598338 38598387 -158597045 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 879 245 271 10 68 chr1 38598776 38598879 -158596553 - MLT1A1 LTR MaLR -10 398 302 1 879 313 289 201 121 chr1 38600280 38600544 -158594888 + MTD LTR MaLR 21 307 -72 1 879 717 176 17 0 chr1 38600638 38600814 -158594618 + (TGG)n Simple_repeat Simple_repeat 1 179 0 1 879 210 354 71 10 chr1 38601372 38601569 -158593863 - MIRb SINE MIR -59 209 1 1 879 190 51 0 71 chr1 38601753 38601795 -158593637 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 1 879 630 0 0 0 chr1 38602120 38602190 -158593242 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 879 227 268 69 49 chr1 38604187 38604289 -158591143 + ORR1E LTR MaLR 6 109 -250 1 879 227 294 23 12 chr1 38607412 38607498 -158587934 + L1M5 LINE L1 5730 5816 -308 1 879 22 35 0 0 chr1 38608406 38608435 -158586997 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 1247 27 0 14 chr1 38608435 38608583 -158586849 - B1_Mm SINE Alu 0 147 2 1 879 403 258 204 32 chr1 38609543 38609763 -158585669 + L1MB2 LINE L1 5448 5705 -466 1 879 788 289 84 49 chr1 38609871 38610217 -158585215 + MLT1B LTR MaLR 2 359 -31 1 879 236 311 162 10 chr1 38610241 38610439 -158584993 + L1MB2 LINE L1 5846 6073 -98 1 879 789 259 121 42 chr1 38610737 38611044 -158584388 - MTEb LTR MaLR -15 364 34 1 879 23 0 0 0 chr1 38611109 38611132 -158584300 + AT_rich Low_complexity Low_complexity 1 23 0 1 879 243 272 111 0 chr1 38611331 38611412 -158584020 + L1ME3B LINE L1 6031 6120 -120 1 879 315 49 0 0 chr1 38611667 38611708 -158583724 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 879 266 318 32 4 chr1 38612100 38612214 -158583218 + B1F1 SINE Alu 6 120 0 1 879 561 294 30 30 chr1 38612322 38612487 -158582945 + ID_B1 SINE B4 60 224 0 1 879 455 276 16 0 chr1 38612491 38612618 -158582814 + B1F SINE Alu 12 140 -9 1 879 306 125 0 0 chr1 38612650 38612698 -158582734 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 879 355 324 28 42 chr1 38615763 38615905 -158579527 + ID_B1 SINE B4 81 220 -4 1 879 883 208 29 24 chr1 38616341 38616548 -158578884 + B3 SINE B2 1 208 -8 1 879 243 190 17 17 chr1 38617009 38617068 -158578364 + GA-rich Low_complexity Low_complexity 1 59 0 1 879 286 323 80 35 chr1 38619494 38619693 -158575739 + L2a LINE L2 3032 3239 -187 1 879 3562 96 56 30 chr1 38619754 38620323 -158575109 + Lx4A LINE L1 6472 7055 -3 1 879 579 29 0 0 chr1 38620766 38620835 -158574597 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 879 219 36 0 0 chr1 38622587 38622615 -158572817 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 1 879 270 0 0 0 chr1 38623251 38623281 -158572151 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 1 879 21 0 0 0 chr1 38624047 38624068 -158571364 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 21 0 0 0 chr1 38624335 38624356 -158571076 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 868 161 32 21 chr1 38624399 38624589 -158570843 + L1MA5 LINE L1 6102 6293 -7 1 879 609 287 130 38 chr1 38626047 38626308 -158569124 - Lx8 LINE L1 -928 6545 6261 1 879 816 306 47 12 chr1 38627191 38627512 -158567920 - MER2 DNA MER2_type -13 332 1 1 879 543 56 0 0 chr1 38627653 38627724 -158567708 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 879 502 276 35 7 chr1 38628047 38628189 -158567243 + B1_Mur3 SINE Alu 1 146 -3 1 879 409 242 11 11 chr1 38628313 38628405 -158567027 + RSINE1 SINE B4 57 148 -17 1 879 423 0 0 0 chr1 38628893 38628940 -158566492 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 879 8483 41 3 2 chr1 38629486 38630600 -158564832 - L1Md_F2 LINE L1 -1 6581 5468 1 879 295 200 15 15 chr1 38632393 38632459 -158562973 + MLT2B4 LTR ERVL 404 469 -87 1 879 425 273 14 34 chr1 38633317 38633446 -158561986 - MER58A DNA MER1_type -4 220 95 1 879 3404 179 9 146 chr1 38633446 38634495 -158560937 + RMER17A2 LTR ERVK 1 906 0 1 879 303 297 0 0 chr1 38634511 38634585 -158560847 - MER58A DNA MER1_type -144 80 7 1 879 311 136 17 0 chr1 38634747 38634806 -158560626 + CT-rich Low_complexity Low_complexity 2 61 0 1 879 430 273 33 0 chr1 38635178 38635328 -158560104 - L3 LINE CR1 -1561 2928 2774 1 879 200 271 0 33 chr1 38635577 38635638 -158559794 + MIR SINE MIR 52 110 -152 1 879 267 181 56 0 chr1 38636706 38636778 -158558654 + (CATG)n Simple_repeat Simple_repeat 2 77 0 1 879 255 270 189 6 chr1 38637383 38637547 -158557885 + L1M4 LINE L1 4967 5160 -986 1 879 268 304 68 88 chr1 38637585 38637733 -158557699 + B4 SINE B4 1 145 -147 1 879 441 179 0 0 chr1 38637749 38637833 -158557599 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 879 434 209 47 19 chr1 38637910 38638017 -158557415 - PB1D9 SINE Alu -9 111 2 1 879 1039 222 9 19 chr1 38638059 38638275 -158557157 - B3 SINE B2 0 216 3 1 879 721 249 33 22 chr1 38638281 38638462 -158556970 - B3 SINE B2 0 216 34 1 879 734 257 65 22 chr1 38638464 38638742 -158556690 + L1M4 LINE L1 5263 5552 -626 1 879 231 208 38 38 chr1 38638789 38638869 -158556563 + L1MB7 LINE L1 6105 6184 0 1 879 268 324 67 0 chr1 38639464 38639569 -158555863 - MIR SINE MIR -135 127 16 1 879 749 287 189 13 chr1 38640302 38640609 -158554823 + Lx8 LINE L1 7109 7469 -4 1 879 601 241 77 58 chr1 38640771 38640978 -158554454 + B3 SINE B2 2 212 -4 1 879 264 330 25 8 chr1 38641676 38641795 -158553637 + L1MEd LINE L1 604 724 -5395 1 879 737 278 98 20 chr1 38641969 38642266 -158553166 + L1MA6 LINE L1 5977 6296 -4 1 879 335 288 44 36 chr1 38642298 38642435 -158552997 + L1MB2 LINE L1 6033 6170 -1 1 879 767 166 20 20 chr1 38644031 38644179 -158551253 - B1_Mur2 SINE Alu -1 148 1 1 879 353 266 26 88 chr1 38646736 38646930 -158548502 + MTEb LTR MaLR 198 379 0 1 879 218 32 32 0 chr1 38647141 38647172 -158548260 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1 879 1008 89 0 0 chr1 38647174 38647320 -158548112 - B1_Mus1 SINE Alu 0 148 3 1 879 216 321 53 18 chr1 38648672 38648786 -158546646 + L3 LINE CR1 4121 4238 -251 1 879 3839 58 19 0 chr1 38649197 38649663 -158545769 - MT2C_Mm LTR ERVL 0 475 1 1 879 396 0 0 0 chr1 38650158 38650202 -158545230 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 879 245 98 24 0 chr1 38650501 38650542 -158544890 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 879 207 0 0 0 chr1 38650728 38650751 -158544681 + (T)n Simple_repeat Simple_repeat 1 23 0 1 879 209 220 20 0 chr1 38651047 38651097 -158544335 + L2a LINE L2 3371 3421 -5 1 879 244 266 16 0 chr1 38651980 38652044 -158543388 + B4A SINE B4 220 284 -8 1 879 963 316 51 25 chr1 38653181 38653652 -158541780 + Lx8 LINE L1 6966 7448 -25 1 879 741 267 86 29 chr1 38653703 38653946 -158541486 + MLT1C LTR MaLR 204 460 -7 1 879 944 262 66 24 chr1 38654357 38654646 -158540786 - MER2 DNA MER2_type -20 325 25 1 879 230 255 0 0 chr1 38655586 38655633 -158539799 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 879 311 335 41 88 chr1 38655729 38655753 -158539679 + B4 SINE B4 64 222 -67 1 879 686 259 0 0 chr1 38655753 38655896 -158539536 + B1_Mur1 SINE Alu 2 144 -5 1 879 409 269 127 33 chr1 38657685 38657866 -158537566 + MLT1D LTR MaLR 1 198 -307 1 879 2868 114 46 43 chr1 38657930 38658469 -158536963 + RLTR20A LTR ERVK 1 541 0 1 879 426 277 23 15 chr1 38658509 38658641 -158536791 + MLT1D LTR MaLR 371 503 -2 1 879 192 83 41 20 chr1 38659591 38659640 -158535792 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 879 333 329 146 0 chr1 38659645 38659809 -158535623 - MER2 DNA MER2_type -5 340 153 1 879 297 311 0 0 chr1 38660486 38660560 -158534872 + PB1D7 SINE Alu 26 99 -21 1 879 244 48 23 23 chr1 38660560 38660603 -158534829 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 879 1060 72 0 42 chr1 38660603 38660747 -158534685 - B1_Mus1 SINE Alu -9 139 2 1 879 3641 77 4 6 chr1 38660794 38661266 -158534166 + MT2C_Mm LTR ERVL 5 475 0 1 879 247 269 0 0 chr1 38661945 38662012 -158533420 + Lx6 LINE L1 7374 7440 -20 1 879 452 98 110 0 chr1 38662029 38662111 -158533321 + B3 SINE B2 1 91 -125 1 879 377 336 28 49 chr1 38662516 38662660 -158532772 - B1F SINE Alu -8 141 1 1 879 248 231 0 82 chr1 38663955 38664040 -158531392 - Charlie24 DNA MER1_type -21 2429 2352 1 879 190 336 8 74 chr1 38665245 38665367 -158530065 - MIR SINE MIR -46 216 103 1 109 643 304 126 24 chr1 38666046 38666514 -158528918 + L1M4 LINE L1 3737 4252 -1894 1 880 792 59 0 0 chr1 38666532 38666634 -158528798 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 880 22 0 0 0 chr1 38666734 38666756 -158528676 + AT_rich Low_complexity Low_complexity 1 22 0 1 880 300 154 0 0 chr1 38668167 38668219 -158527213 + (TGG)n Simple_repeat Simple_repeat 1 52 0 1 880 246 32 0 0 chr1 38668224 38668255 -158527177 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 880 426 297 116 44 chr1 38668980 38669230 -158526202 - MIRb SINE MIR 0 268 1 1 880 21 0 0 0 chr1 38669247 38669268 -158526164 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 390 135 10 73 chr1 38671023 38671215 -158524217 + CT-rich Low_complexity Low_complexity 1 180 0 2 880 270 191 22 22 chr1 38671230 38671369 -158524063 + CT-rich Low_complexity Low_complexity 3 141 0 2 880 227 31 31 0 chr1 38672732 38672764 -158522668 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 2 880 872 79 286 0 chr1 38673724 38673864 -158521568 + B2_Mm2 SINE B2 1 180 -15 2 880 513 285 68 20 chr1 38674994 38675141 -158520291 + MER5A1 DNA MER1_type 1 154 -12 2 880 279 0 0 0 chr1 38675232 38675263 -158520169 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 880 203 140 0 20 chr1 38675269 38675320 -158520112 + A-rich Low_complexity Low_complexity 5 54 0 2 880 1341 222 108 19 chr1 38675884 38676256 -158519176 - MTD LTR MaLR -13 406 2 2 880 1559 185 121 74 chr1 38678496 38678917 -158516515 - BGLII_B LTR ERVK 0 441 1 2 880 373 303 62 6 chr1 38679008 38679184 -158516248 + MER112 DNA MER1_type 73 258 -3 2 880 613 301 10 30 chr1 38679266 38679465 -158515967 - B3A SINE B2 -3 195 1 2 880 190 304 73 37 chr1 38679837 38679919 -158515513 + L2c LINE L2 3069 3153 -234 2 880 227 200 0 0 chr1 38679921 38679971 -158515461 + A-rich Low_complexity Low_complexity 3 52 0 2 880 388 325 35 20 chr1 38681022 38681221 -158514211 + MIR SINE MIR 9 205 -57 2 880 326 300 80 26 chr1 38681426 38681539 -158513893 + PB1D7 SINE Alu 2 120 0 2 880 245 185 15 0 chr1 38681543 38681608 -158513824 + GA-rich Low_complexity Low_complexity 1 66 0 2 880 445 241 86 8 chr1 38681956 38682073 -158513359 + B1_Mur1 SINE Alu 3 128 -21 2 880 297 0 0 0 chr1 38682080 38682113 -158513319 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 880 309 162 0 0 chr1 38684001 38684069 -158511363 + (CCG)n Simple_repeat Simple_repeat 1 68 0 2 880 183 80 0 0 chr1 38684141 38684166 -158511266 + (CCCG)n Simple_repeat Simple_repeat 3 27 0 2 880 209 252 21 56 chr1 38684221 38684364 -158511068 + (CCCG)n Simple_repeat Simple_repeat 4 141 0 2 880 195 42 0 0 chr1 38684388 38684412 -158511020 + (CCCG)n Simple_repeat Simple_repeat 3 26 0 2 880 31 76 0 0 chr1 38684437 38684503 -158510929 + GC_rich Low_complexity Low_complexity 1 66 0 2 880 31 58 0 0 chr1 38686892 38686944 -158508488 + AT_rich Low_complexity Low_complexity 1 52 0 2 880 234 150 0 0 chr1 38687019 38687059 -158508373 + (GAA)n Simple_repeat Simple_repeat 2 41 0 2 880 315 0 0 0 chr1 38687261 38687296 -158508136 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 2 880 653 126 0 44 chr1 38687299 38687482 -158507950 + (CATA)n Simple_repeat Simple_repeat 2 176 0 2 880 419 35 0 17 chr1 38687507 38687565 -158507867 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 880 180 179 0 0 chr1 38687984 38688023 -158507409 + CT-rich Low_complexity Low_complexity 4 42 0 2 880 192 40 0 0 chr1 38689220 38689245 -158506187 + (A)n Simple_repeat Simple_repeat 1 25 0 2 880 277 394 36 47 chr1 38690778 38691079 -158504353 + MLT1J LTR MaLR 111 408 -104 2 880 234 301 215 0 chr1 38693775 38693868 -158501564 - MER45R DNA Tip100 -1466 115 3 2 880 234 225 0 0 chr1 38694449 38694489 -158500943 + tRNA-Ala-GCA tRNA tRNA 33 72 -3 2 880 21 0 0 0 chr1 38694498 38694519 -158500913 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 396 0 0 0 chr1 38694575 38694619 -158500813 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 880 188 330 82 0 chr1 38694627 38694724 -158500708 - MER5B DNA MER1_type -2 176 72 2 880 2403 155 128 29 chr1 38694844 38695247 -158500185 + RLTR20C LTR ERVK 3 434 -100 2 880 396 0 0 0 chr1 38695247 38695291 -158500141 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 880 2403 155 128 29 chr1 38695291 38695371 -158500061 + RLTR20C LTR ERVK 435 533 -1 2 880 247 316 36 7 chr1 38695599 38695736 -158499696 - L1MEg LINE L1 -1601 4545 4405 2 880 270 0 0 0 chr1 38695843 38695873 -158499559 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 880 2488 291 67 19 chr1 38695929 38696749 -158498683 + Lx8 LINE L1 6260 7118 -355 2 880 749 267 39 15 chr1 38697409 38697614 -158497818 - B3 SINE B2 -6 210 1 2 880 396 308 78 29 chr1 38697621 38697902 -158497530 - L1MEg LINE L1 -3178 2968 2674 2 880 368 243 66 66 chr1 38698056 38698237 -158497195 - L1MEg LINE L1 -5433 809 629 2 880 252 0 0 0 chr1 38698384 38698412 -158497020 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2 880 813 271 60 26 chr1 38699357 38699626 -158495806 - L4 LINE RTE -1472 557 280 2 880 223 349 28 9 chr1 38699663 38699770 -158495662 - MIR SINE MIR -84 178 70 2 880 420 239 96 7 chr1 38700179 38700314 -158495118 - L1M2 LINE L1 -863 5280 5134 2 880 333 68 0 0 chr1 38700327 38700371 -158495061 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 880 211 245 20 0 chr1 38700371 38700420 -158495012 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2 880 640 239 69 26 chr1 38700582 38700771 -158494661 + B3A SINE B2 1 197 -1 2 880 229 259 37 0 chr1 38700795 38700849 -158494583 + B1_Mus1 SINE Alu 1 56 -92 2 880 261 288 0 121 chr1 38700882 38700973 -158494459 + PB1D9 SINE Alu 40 119 -1 2 880 668 118 0 30 chr1 38700976 38701107 -158494325 + (GGAAA)n Simple_repeat Simple_repeat 5 131 0 2 880 901 203 109 5 chr1 38702268 38702461 -158492971 - B3 SINE B2 0 216 4 2 880 205 88 0 29 chr1 38703038 38703073 -158492359 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 880 266 297 60 108 chr1 38704460 38704709 -158490723 + RMER15 LTR ERVL 325 561 -14 2 880 243 0 0 0 chr1 38705708 38705735 -158489697 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 880 2061 181 80 16 chr1 38705852 38706240 -158489192 - MTC LTR MaLR -8 413 1 2 880 243 0 0 0 chr1 38707534 38707561 -158487871 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 880 349 304 68 31 chr1 38707818 38707981 -158487451 - MIRb SINE MIR -6 262 94 2 880 779 281 94 15 chr1 38708237 38708504 -158486928 - B4 SINE B4 -4 288 1 2 880 256 329 38 0 chr1 38709776 38709855 -158485577 - MIRb SINE MIR -5 263 182 2 880 230 200 0 48 chr1 38710087 38710150 -158485282 + L1MA8 LINE L1 6095 6154 -137 2 880 483 202 0 0 chr1 38710150 38710259 -158485173 + (CACCAT)n Simple_repeat Simple_repeat 1 109 0 2 880 1047 147 0 0 chr1 38710260 38710437 -158484995 + (CCA)n Simple_repeat Simple_repeat 1 177 0 2 880 966 162 0 0 chr1 38710439 38710618 -158484814 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 2 880 363 256 22 0 chr1 38710626 38710716 -158484716 + HAL1-2a_MD LINE L1 2419 2510 -514 2 880 2616 28 2 260 chr1 38710764 38711287 -158484145 - RLTR10 LTR ERVK -2 388 1 2 880 1530 38 38 0 chr1 38711569 38711752 -158483680 + B2_Mm2 SINE B2 2 191 -4 2 880 355 252 24 98 chr1 38711938 38712061 -158483371 - B2_Mm2 SINE B2 -1 194 81 2 880 448 261 14 55 chr1 38713266 38713437 -158481995 + ID_B1 SINE B4 79 243 -49 2 880 273 29 0 0 chr1 38713671 38713705 -158481727 + (CCA)n Simple_repeat Simple_repeat 1 34 0 2 880 787 105 50 4 chr1 38713894 38714153 -158481279 + (TAGA)n Simple_repeat Simple_repeat 1 271 0 2 880 528 237 102 45 chr1 38714203 38714427 -158481005 - B3A SINE B2 0 216 1 2 880 333 280 107 75 chr1 38714690 38715065 -158480367 - L2 LINE L2 -564 2855 2469 2 880 1010 226 20 0 chr1 38715697 38715892 -158479540 - B3 SINE B2 -1 215 17 2 880 21 0 0 0 chr1 38715908 38715929 -158479503 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 301 170 19 0 chr1 38716240 38716293 -158479139 + Charlie22a DNA MER1_type 411 464 -27 2 880 441 326 17 0 chr1 38716533 38716813 -158478619 + (CA)n Simple_repeat Simple_repeat 1 284 0 2 880 585 264 41 46 chr1 38717652 38717847 -158477585 - B3A SINE B2 -3 195 2 2 880 843 288 64 60 chr1 38719068 38719349 -158476083 + B4A SINE B4 9 290 -2 2 880 198 0 0 0 chr1 38719374 38719396 -158476036 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 880 420 321 114 12 chr1 38720290 38720457 -158474975 - MIR SINE MIR -32 230 47 2 880 213 94 0 0 chr1 38721118 38721150 -158474282 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 880 486 49 0 0 chr1 38721456 38721517 -158473915 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 880 369 109 0 0 chr1 38722156 38722211 -158473221 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 880 1782 114 26 22 chr1 38722253 38722629 -158472803 - ORR1A4 LTR MaLR -18 376 1 2 880 659 299 53 30 chr1 38722648 38722910 -158472522 - B4A SINE B4 -22 270 3 2 880 234 268 12 12 chr1 38724142 38724225 -158471207 - L1MB5 LINE L1 -26 6148 6066 2 880 330 87 0 0 chr1 38724404 38724450 -158470982 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 880 231 250 58 70 chr1 38725548 38725706 -158469726 + MIRb SINE MIR 53 222 -54 2 880 313 266 122 39 chr1 38725917 38726097 -158469335 + ORR1E LTR MaLR 60 254 -105 2 880 342 91 0 0 chr1 38726150 38726205 -158469227 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 2 880 810 228 71 15 chr1 38726226 38726422 -158469010 + B3 SINE B2 1 207 -9 2 880 494 247 28 0 chr1 38726849 38726972 -158468460 - B1F2 SINE Alu -20 129 3 2 880 260 284 81 0 chr1 38726914 38726988 -158468444 - B4A SINE B4 -146 146 67 2 880 186 361 39 47 chr1 38727365 38727493 -158467939 - MIR3 SINE MIR -78 130 4 2 880 1209 276 75 18 chr1 38728504 38728946 -158466486 + Lx6 LINE L1 64 530 -7198 2 880 12413 169 44 38 chr1 38728957 38730136 -158465296 + Lx6 LINE L1 859 2061 -3819 2 880 774 83 0 0 chr1 38730136 38730256 -158465176 + (CA)n Simple_repeat Simple_repeat 1 120 0 2 880 12413 159 50 48 chr1 38730256 38730632 -158464800 + Lx6 LINE L1 2062 2417 -3463 2 880 648 221 21 14 chr1 38730632 38730774 -158464658 - B1_Mus2 SINE Alu -1 146 4 2 880 12413 159 50 48 chr1 38730774 38731062 -158464370 + Lx6 LINE L1 2418 2699 -3181 2 880 1134 82 0 0 chr1 38731062 38731208 -158464224 + B1_Mus2 SINE Alu 2 147 0 2 880 12413 159 50 48 chr1 38731208 38731542 -158463890 + Lx6 LINE L1 2700 2998 -2882 2 880 1259 27 0 0 chr1 38731542 38731688 -158463744 + B1_Mm SINE Alu 2 147 0 2 880 12413 159 50 48 chr1 38731688 38732559 -158462873 + Lx6 LINE L1 2999 3924 -1956 2 880 3599 183 128 14 chr1 38732553 38732777 -158462655 + Lx6 LINE L1 4953 5172 -708 2 880 1035 116 7 0 chr1 38732777 38732924 -158462508 + B1_Mus1 SINE Alu 1 148 0 2 880 7524 199 111 17 chr1 38732924 38734927 -158460505 + Lx6 LINE L1 5173 7379 -81 2 880 25 0 0 0 chr1 38734959 38734984 -158460448 + AT_rich Low_complexity Low_complexity 1 25 0 3 880 759 266 5 41 chr1 38735183 38735379 -158460053 + B3A SINE B2 2 190 -8 3 880 540 231 40 59 chr1 38736357 38736509 -158458923 + MTEb LTR MaLR 4 152 -227 3 880 963 219 23 39 chr1 38736610 38736867 -158458565 + MTEb LTR MaLR 127 379 0 3 880 408 364 34 0 chr1 38737856 38738032 -158457400 - LTR33 LTR ERVL -328 187 6 3 880 363 289 10 10 chr1 38738835 38738933 -158456499 - B4A SINE B4 -193 99 2 3 880 456 135 0 0 chr1 38738940 38739014 -158456418 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 3 880 1116 189 48 5 chr1 38739351 38739558 -158455874 - B3 SINE B2 0 216 1 3 880 351 0 0 0 chr1 38739570 38739609 -158455823 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 3 880 189 0 0 0 chr1 38739609 38739630 -158455802 + (T)n Simple_repeat Simple_repeat 1 21 0 3 880 771 191 43 0 chr1 38739640 38739781 -158455651 - B1_Mur3 SINE Alu 0 149 3 3 880 1733 263 108 32 chr1 38739891 38740650 -158454782 + L1ME1 LINE L1 5255 6071 -108 3 880 529 352 36 40 chr1 38740925 38741594 -158453838 + L1M5 LINE L1 3732 4397 -1749 3 880 769 260 28 0 chr1 38741596 38741773 -158453659 + B3A SINE B2 1 182 -16 3 880 361 290 0 17 chr1 38741773 38742018 -158453414 + (CATATA)n Simple_repeat Simple_repeat 1 240 0 3 880 212 304 0 0 chr1 38742019 38742075 -158453357 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 880 272 228 159 24 chr1 38742078 38742204 -158453228 + L1M5 LINE L1 4446 4588 -1558 3 880 361 311 80 25 chr1 38742423 38742624 -158452808 + L1M5 LINE L1 4980 5191 -955 3 880 260 270 48 48 chr1 38743048 38743153 -158452279 + L1M5 LINE L1 5598 5702 -471 3 880 392 324 0 0 chr1 38743556 38743664 -158451768 + PB1D10 SINE Alu 4 111 -6 3 880 792 55 0 0 chr1 38743759 38743869 -158451563 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 880 441 175 0 0 chr1 38743869 38743972 -158451460 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 880 1630 207 62 23 chr1 38743972 38744362 -158451070 - MTD LTR MaLR -14 405 1 3 880 735 181 0 0 chr1 38744365 38744600 -158450832 + (CA)n Simple_repeat Simple_repeat 1 235 0 3 880 626 179 6 0 chr1 38744611 38744779 -158450653 + (CA)n Simple_repeat Simple_repeat 2 170 0 3 880 252 0 0 0 chr1 38744840 38744868 -158450564 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 880 3267 129 114 35 chr1 38745441 38746097 -158449335 - RMER1A Other Other 0 1030 323 3 880 492 18 0 0 chr1 38747038 38747095 -158448337 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 880 221 225 0 0 chr1 38747114 38747154 -158448278 + polypurine Low_complexity Low_complexity 2 41 0 3 880 229 313 40 63 chr1 38747643 38747817 -158447615 - MLT1C LTR MaLR -37 430 261 3 880 420 20 0 0 chr1 38749194 38749243 -158446189 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 880 384 320 47 51 chr1 38750177 38750391 -158445041 + LTR33 LTR ERVL 3 215 -300 3 880 1368 67 0 0 chr1 38750598 38750778 -158444654 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 3 880 639 268 87 0 chr1 38752032 38752215 -158443217 + B3 SINE B2 9 207 -9 3 880 400 250 78 31 chr1 38752252 38752380 -158443052 - B1F SINE Alu -13 136 3 3 880 477 0 0 0 chr1 38752625 38752678 -158442754 + (TAA)n Simple_repeat Simple_repeat 3 55 0 3 880 459 285 73 28 chr1 38754617 38754794 -158440638 + Tigger5 DNA MER2_type 1 185 -2221 3 880 198 303 73 29 chr1 38755614 38755750 -158439682 - L2b LINE L2 -209 3166 3025 3 880 314 292 36 84 chr1 38757028 38757241 -158438191 - L1MB4 LINE L1 -405 6039 5837 3 880 252 327 94 19 chr1 38757590 38757696 -158437736 - PB1D10 SINE Alu -1 116 3 3 880 635 271 0 0 chr1 38757752 38757885 -158437547 + RSINE1 SINE B4 9 141 -24 3 880 267 104 0 0 chr1 38757890 38757938 -158437494 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 880 387 234 0 0 chr1 38758036 38758207 -158437225 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 880 359 265 15 8 chr1 38758214 38758347 -158437085 + (CAGA)n Simple_repeat Simple_repeat 3 136 0 3 880 751 288 83 120 chr1 38758756 38759438 -158435994 - L1MB3 LINE L1 -48 6135 5468 3 880 258 32 0 0 chr1 38759547 38759578 -158435854 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 880 1095 67 0 0 chr1 38759582 38759732 -158435700 - B2_Mm2 SINE B2 -45 150 1 3 880 672 247 32 25 chr1 38759849 38760007 -158435425 + B3A SINE B2 2 160 -38 3 880 270 0 0 0 chr1 38760024 38760054 -158435378 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 880 580 381 56 0 chr1 38760090 38760413 -158435019 - Kanga1b DNA Tc2 -412 367 27 3 880 2793 68 0 21 chr1 38760417 38760790 -158434642 + L1Md_F2 LINE L1 6218 6582 0 3 880 374 231 242 39 chr1 38761482 38761635 -158433797 + Lx8 LINE L1 6323 6506 -967 3 880 2911 14 5 103 chr1 38761644 38762051 -158433381 + IAPLTR1_Mm LTR ERVK 1 367 0 3 880 8387 79 75 23 chr1 38762051 38763292 -158432140 + IAPEz-int LTR ERVK 8 1313 -5168 3 880 4854 4 0 0 chr1 38763291 38763811 -158431621 + IAPEz-int LTR ERVK 3210 3729 -2752 3 880 14728 25 2 1 chr1 38763797 38765450 -158429982 + IAPEz-int LTR ERVK 4827 6481 0 3 880 2911 14 5 103 chr1 38765450 38765857 -158429575 + IAPLTR1_Mm LTR ERVK 1 367 0 3 880 317 298 17 42 chr1 38765862 38765981 -158429451 + Lx8 LINE L1 6519 6634 -839 3 880 434 267 43 29 chr1 38765990 38766129 -158429303 + Lx8 LINE L1 6973 7113 -360 3 880 181 0 0 65 chr1 38766177 38766208 -158429224 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 880 909 293 55 127 chr1 38766346 38767043 -158428389 + Tigger7 DNA MER2_type 2 665 -40 3 880 207 275 35 60 chr1 38767612 38767728 -158427704 + L2a LINE L2 3282 3394 -32 3 880 301 63 24 71 chr1 38767996 38768081 -158427351 + T-rich Low_complexity Low_complexity 2 82 0 3 880 371 358 68 35 chr1 38768109 38768419 -158427013 - ORR1E LTR MaLR 0 359 40 3 880 811 233 211 14 chr1 38768377 38768656 -158426776 + ORR1E LTR MaLR 6 339 -20 3 880 369 0 0 0 chr1 38768657 38768698 -158426734 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 880 537 92 0 0 chr1 38769475 38769551 -158425881 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 880 1180 203 9 0 chr1 38770016 38770238 -158425194 + L1_Mur3 LINE L1 4995 5218 -662 3 880 422 215 21 21 chr1 38770237 38770332 -158425100 + Lx7 LINE L1 6805 6899 -797 3 880 3137 66 10 2 chr1 38770338 38770735 -158424697 - MTB LTR MaLR 0 400 1 3 880 223 174 22 0 chr1 38770735 38770781 -158424651 + GA-rich Low_complexity Low_complexity 1 47 0 3 880 1523 221 184 19 chr1 38770781 38771265 -158424167 + Lx7 LINE L1 6866 7429 -267 3 880 501 225 8 4 chr1 38772294 38772555 -158422877 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 880 806 134 112 0 chr1 38773119 38773253 -158422179 + B1_Mur2 SINE Alu 1 149 0 3 880 304 246 73 48 chr1 38774565 38774689 -158420743 - MTEa LTR MaLR -13 366 240 3 880 237 244 181 43 chr1 38774855 38774949 -158420483 - ORR1E-int LTR MaLR -28 1552 1446 3 880 1354 176 130 9 chr1 38774959 38775275 -158420157 - ORR1B1 LTR MaLR 0 394 41 3 880 1299 321 111 16 chr1 38775289 38775855 -158419577 - ORR1E-int LTR MaLR -188 1392 773 3 880 1328 291 66 32 chr1 38776091 38776591 -158418841 - ORR1E-int LTR MaLR -923 657 141 3 880 21 0 0 0 chr1 38776591 38776612 -158418820 + AT_rich Low_complexity Low_complexity 1 21 0 3 880 762 172 182 5 chr1 38776632 38776819 -158418613 - URR1B DNA MER1_type -5 220 1 3 880 360 330 26 0 chr1 38776820 38776935 -158418497 - ORR1E-int LTR MaLR -1453 127 10 3 880 712 216 105 164 chr1 38776935 38777306 -158418126 - ORR1E LTR MaLR -10 349 1 3 880 251 272 0 7 chr1 38778095 38778232 -158417200 + (TA)n Simple_repeat Simple_repeat 2 137 0 3 880 343 279 104 37 chr1 38779264 38779398 -158416034 + MER74A LTR ERVL 219 361 -197 3 880 360 0 0 0 chr1 38780438 38780478 -158414954 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 880 322 224 26 26 chr1 38780632 38780710 -158414722 + MER74A LTR ERVL 481 558 0 3 880 3422 38 5 0 chr1 38781010 38781408 -158414024 + MTB LTR MaLR 1 400 0 3 880 571 324 69 6 chr1 38783390 38783564 -158411868 + Tigger7 DNA MER2_type 3 187 -2304 3 880 2969 99 72 15 chr1 38783580 38784040 -158411392 - Lx2A1 LINE L1 -14 6994 6509 3 880 1131 210 10 10 chr1 38784718 38784915 -158410517 + B3 SINE B2 3 199 -17 3 880 394 294 126 0 chr1 38784931 38785050 -158410382 + B3A SINE B2 36 169 -29 3 880 896 155 21 0 chr1 38785081 38785223 -158410209 + B1_Mus1 SINE Alu 4 148 0 3 880 285 208 0 0 chr1 38785237 38785314 -158410118 + (TGG)n Simple_repeat Simple_repeat 1 77 0 3 880 376 340 0 9 chr1 38786775 38786885 -158408547 + (CACG)n Simple_repeat Simple_repeat 4 112 0 3 880 1226 61 0 0 chr1 38788411 38788558 -158406874 + B1_Mus1 SINE Alu 2 148 0 3 880 303 373 88 12 chr1 38788836 38789007 -158406425 - L1MC4 LINE L1 -58 7984 7801 3 880 550 292 112 87 chr1 38789036 38789367 -158406065 - MLT1E LTR MaLR -32 621 162 3 880 225 319 17 17 chr1 38789821 38789936 -158405496 - L1MC4 LINE L1 -484 7398 7284 3 880 1958 228 37 13 chr1 38790034 38790368 -158405064 - MT2A LTR ERVL -1 532 188 3 880 1086 86 0 0 chr1 38790368 38790519 -158404913 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 3 880 1958 228 37 13 chr1 38790519 38790641 -158404791 - MT2A LTR ERVL -346 187 65 3 880 312 283 106 38 chr1 38790525 38790657 -158404775 - MTEa LTR MaLR -194 185 45 3 880 1407 80 32 0 chr1 38790904 38791092 -158404340 + B2_Mm2 SINE B2 1 194 -1 3 880 585 274 94 33 chr1 38791216 38791461 -158403971 - L1MC4 LINE L1 -1005 7037 6778 3 880 220 348 74 50 chr1 38793525 38793646 -158401786 + MER5B DNA MER1_type 51 174 -4 3 880 2686 195 27 13 chr1 38793885 38794410 -158401022 - RMER15 LTR ERVL -5 570 39 3 880 250 311 88 50 chr1 38794520 38794679 -158400753 - MIR3 SINE MIR -26 182 18 3 880 1027 97 0 24 chr1 38795105 38795274 -158400158 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 3 880 289 286 71 63 chr1 38796031 38796158 -158399274 - LTR16A LTR ERVL -73 378 251 3 880 342 322 73 41 chr1 38796957 38797177 -158398255 - MIR SINE MIR -6 256 30 3 881 283 289 26 0 chr1 38797395 38797471 -158397961 - MIR3 SINE MIR -45 163 86 3 881 1796 177 120 24 chr1 38798677 38799059 -158396373 - MTD LTR MaLR 0 419 1 3 881 466 307 92 60 chr1 38799290 38799636 -158395796 + ORR1E LTR MaLR 10 358 -12 3 881 1336 278 100 18 chr1 38800049 38800599 -158394833 - L1M4 LINE L1 -1752 4394 3800 3 881 915 273 93 56 chr1 38800609 38800985 -158394447 + MLT2B4 LTR ERVL 6 395 -161 3 881 249 351 54 0 chr1 38801157 38801268 -158394164 + L2a LINE L2 2683 2799 -620 3 881 246 366 83 25 chr1 38801303 38801460 -158393972 + L2a LINE L2 3004 3169 -257 3 881 196 362 29 0 chr1 38801482 38801551 -158393881 + L2a LINE L2 3209 3279 -96 3 881 188 302 235 27 chr1 38801788 38801975 -158393457 + L2a LINE L2 1111 1336 -2083 3 881 412 333 99 44 chr1 38802188 38802662 -158392770 + L2a LINE L2 1455 1954 -1465 3 881 220 292 173 12 chr1 38802693 38802866 -158392566 + L2a LINE L2 2087 2287 -1132 3 881 217 146 24 0 chr1 38803179 38803220 -158392212 + (CAAAG)n Simple_repeat Simple_repeat 3 44 0 3 881 281 286 230 41 chr1 38803298 38803448 -158391984 + L2a LINE L2 2692 2880 -539 3 881 2851 27 62 3 chr1 38803448 38803785 -158391647 + IAPEY2_LTR LTR ERVK 1 357 0 3 881 281 349 163 27 chr1 38803785 38804239 -158391193 + L2a LINE L2 2881 3382 -44 3 881 679 244 65 10 chr1 38805054 38805339 -158390093 - L1MA4 LINE L1 -176 6008 5714 3 881 180 250 0 0 chr1 38806007 38806071 -158389361 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 881 315 0 0 0 chr1 38806208 38806243 -158389189 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 881 814 309 64 46 chr1 38806256 38806737 -158388695 - L1MD2 LINE L1 -229 6130 5641 4 881 484 238 111 0 chr1 38806826 38806952 -158388480 - ID_B1 SINE B4 -6 218 79 4 881 913 246 77 22 chr1 38806954 38807228 -158388204 - L1MD2 LINE L1 -651 5591 5303 4 881 754 332 19 32 chr1 38807255 38807628 -158387804 - L1MC1 LINE L1 0 6333 5966 4 881 794 265 123 24 chr1 38807667 38807918 -158387514 - B4 SINE B4 -8 284 9 4 881 551 296 128 47 chr1 38807919 38808341 -158387091 - L1MC1 LINE L1 -376 5968 5513 4 881 805 206 7 0 chr1 38808504 38808650 -158386782 - B1_Mm SINE Alu 0 147 1 4 881 724 243 20 60 chr1 38809212 38809462 -158385970 + L1MDa LINE L1 1043 1282 -5258 4 881 294 29 0 0 chr1 38809462 38809497 -158385935 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 881 231 113 37 19 chr1 38809644 38809698 -158385734 + G-rich Low_complexity Low_complexity 2 56 0 4 881 920 288 102 48 chr1 38809709 38810267 -158385165 + L1MDa LINE L1 1490 2077 -4556 4 881 537 186 0 38 chr1 38810268 38810452 -158384980 + GA-rich Low_complexity Low_complexity 1 177 0 4 881 1125 58 7 0 chr1 38810526 38810663 -158384769 + B1_Mm SINE Alu 1 138 -9 4 881 261 0 0 0 chr1 38810663 38810692 -158384740 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 881 237 272 23 0 chr1 38810733 38810807 -158384625 + L1MDa LINE L1 2251 2331 -4302 4 881 646 283 96 64 chr1 38810917 38811166 -158384266 + MTD LTR MaLR 149 405 -14 4 881 616 280 70 17 chr1 38811232 38811624 -158383808 + L1MDa LINE L1 2465 2873 -3664 4 881 562 296 101 0 chr1 38811641 38811810 -158383622 + ID_B1 SINE B4 1 186 -38 4 881 252 0 0 0 chr1 38811924 38811952 -158383480 + (A)n Simple_repeat Simple_repeat 1 28 0 4 881 308 279 48 80 chr1 38811963 38812275 -158383157 + L1MDa LINE L1 2972 3273 -3264 4 881 21 0 0 0 chr1 38812446 38812467 -158382965 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 1644 216 79 8 chr1 38813438 38813829 -158381603 - MTD LTR MaLR 0 419 1 4 881 201 121 0 0 chr1 38814965 38814998 -158380434 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 4 881 764 181 23 0 chr1 38816371 38816504 -158378928 + B1_Mur3 SINE Alu 1 136 -13 4 881 1170 76 0 0 chr1 38816524 38816682 -158378750 + (GAA)n Simple_repeat Simple_repeat 3 160 0 4 881 648 120 0 0 chr1 38816682 38816782 -158378650 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 4 881 483 87 0 0 chr1 38817139 38817208 -158378224 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 4 881 276 323 0 20 chr1 38817773 38817871 -158377561 - MIR SINE MIR -127 135 40 4 881 1246 82 60 11 chr1 38818473 38818657 -158376775 + B2_Mm1t SINE B2 1 193 0 4 881 1830 187 71 39 chr1 38818927 38819061 -158376371 + MTD LTR MaLR 1 128 -291 4 881 6361 53 1 8 chr1 38819061 38819853 -158375579 - L1Md_F2 LINE L1 0 6582 5796 4 881 1830 187 71 39 chr1 38819853 38820124 -158375308 + MTD LTR MaLR 129 419 0 4 881 237 216 0 56 chr1 38820517 38820571 -158374861 + Zaphod DNA Tip100 54 104 -3927 4 881 848 296 27 39 chr1 38820536 38820793 -158374639 + B4 SINE B4 39 292 0 4 881 497 89 0 25 chr1 38820804 38820885 -158374547 + (CATA)n Simple_repeat Simple_repeat 4 82 0 4 881 219 36 0 0 chr1 38822304 38822332 -158373100 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 881 259 0 0 133 chr1 38822341 38822446 -158372986 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 4 881 789 189 0 0 chr1 38822446 38822578 -158372854 - B1_Mur4 SINE Alu -12 138 7 4 881 983 133 6 0 chr1 38822931 38823096 -158372336 + (TTTC)n Simple_repeat Simple_repeat 2 167 0 4 881 429 20 0 0 chr1 38823375 38823425 -158372007 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 881 198 0 0 0 chr1 38823519 38823541 -158371891 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 881 560 120 0 10 chr1 38826318 38826419 -158369013 + (TA)n Simple_repeat Simple_repeat 1 100 0 4 881 444 37 0 0 chr1 38826466 38826520 -158368912 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 881 785 261 91 70 chr1 38828185 38828484 -158366948 + Lx9 LINE L1 7065 7377 -267 4 881 180 0 0 0 chr1 38828484 38828504 -158366928 + (G)n Simple_repeat Simple_repeat 1 20 0 4 881 785 261 91 70 chr1 38828504 38828645 -158366787 + Lx9 LINE L1 7378 7514 -130 4 881 226 273 36 0 chr1 38828656 38828766 -158366666 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 4 881 405 90 0 0 chr1 38829333 38829400 -158366032 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 4 881 676 266 57 0 chr1 38829400 38829558 -158365874 - B3A SINE B2 -31 167 1 4 881 228 241 102 125 chr1 38829630 38829758 -158365674 - MER34 LTR ERV1 -241 301 177 4 881 2268 149 62 17 chr1 38830114 38830619 -158364813 + RMER4B LTR ERVK 34 585 0 4 881 315 340 59 10 chr1 38831156 38831358 -158364074 - L1MC3 LINE L1 -17 7768 7557 4 881 1488 289 99 48 chr1 38831375 38831695 -158363737 - L1MC3 LINE L1 -279 7506 7169 4 881 1388 225 97 18 chr1 38831695 38832035 -158363397 - ORR1D2 LTR MaLR -3 367 1 4 881 1488 289 99 48 chr1 38832035 38832418 -158363014 - L1MC3 LINE L1 -617 7168 6756 4 881 1254 84 45 0 chr1 38832418 38832597 -158362835 - B2_Mm2 SINE B2 -7 188 2 4 881 1488 289 99 48 chr1 38832597 38832649 -158362783 - L1MC3 LINE L1 -1030 6755 6711 4 881 406 278 0 17 chr1 38833304 38833553 -158361879 + (TG)n Simple_repeat Simple_repeat 1 244 0 4 881 770 278 86 34 chr1 38834710 38835093 -158360339 - L1MC3 LINE L1 -1 6332 5930 4 881 44 0 0 0 chr1 38835128 38835172 -158360260 + AT_rich Low_complexity Low_complexity 1 44 0 4 881 722 258 19 0 chr1 38835209 38835368 -158360064 + B3A SINE B2 11 172 -26 4 881 405 70 0 0 chr1 38835432 38835489 -158359943 + (TCC)n Simple_repeat Simple_repeat 1 57 0 4 881 359 315 98 6 chr1 38835489 38835682 -158359750 - L1MC3 LINE L1 -524 5820 5612 4 881 402 281 84 122 chr1 38835761 38836087 -158359345 + B4 SINE B4 1 281 -11 4 881 302 125 0 35 chr1 38836775 38836833 -158358599 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 4 881 195 69 0 0 chr1 38837173 38837202 -158358230 + (TTGGGG)n Simple_repeat Simple_repeat 1 29 0 4 881 341 312 58 133 chr1 38837869 38838109 -158357323 - MLT2B4 LTR ERVL -265 291 70 4 881 835 200 58 58 chr1 38838857 38839048 -158356384 + B3 SINE B2 1 191 -25 4 881 312 27 0 0 chr1 38839057 38839094 -158356338 + (TAA)n Simple_repeat Simple_repeat 3 39 0 4 881 410 127 14 0 chr1 38840225 38840296 -158355136 + (GGA)n Simple_repeat Simple_repeat 3 74 0 4 881 1334 51 6 0 chr1 38840296 38840471 -158354961 + (GAA)n Simple_repeat Simple_repeat 3 178 0 4 881 810 141 14 21 chr1 38840754 38840899 -158354533 - URR1B DNA MER1_type 0 225 82 4 881 700 270 91 86 chr1 38841282 38841643 -158353789 + RMER15 LTR ERVL 198 560 -15 4 881 190 259 18 18 chr1 38843389 38843444 -158351988 - MER5A DNA MER1_type -133 56 2 4 881 273 195 21 84 chr1 38845054 38845149 -158350283 + MER57C2 LTR ERV1 266 354 -80 4 881 207 151 0 36 chr1 38846111 38846166 -158349266 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 4 881 752 214 104 16 chr1 38846601 38846804 -158348628 - MTD LTR MaLR -14 405 156 4 881 336 323 89 19 chr1 38846900 38847058 -158348374 - LTR16A LTR ERVL -35 416 248 4 881 396 302 95 27 chr1 38848608 38848829 -158346603 - ERVL-E-int LTR ERVL -1795 3872 3637 4 881 2765 162 8 20 chr1 38849225 38849723 -158345709 + Lx LINE L1 6163 6654 0 4 881 388 323 134 75 chr1 38849766 38850034 -158345398 + LTR16A LTR ERVL 54 337 -114 4 881 416 221 0 0 chr1 38850060 38850146 -158345286 - MTD LTR MaLR -316 103 18 4 881 201 39 0 0 chr1 38850148 38850174 -158345258 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 881 250 327 73 30 chr1 38850326 38850490 -158344942 + MLT1C LTR MaLR 294 464 -3 4 881 927 8 25 0 chr1 38851304 38851424 -158344008 + (GA)n Simple_repeat Simple_repeat 1 123 0 4 881 998 218 55 59 chr1 38851434 38851707 -158343725 - ORR1D2 LTR MaLR -98 272 1 4 881 556 311 185 12 chr1 38856061 38856226 -158339206 + MLT1D LTR MaLR 8 199 -306 4 881 270 0 0 0 chr1 38856226 38856256 -158339176 + (TGGGGG)n Simple_repeat Simple_repeat 2 31 0 4 881 556 311 185 12 chr1 38856256 38856507 -158338925 + MLT1D LTR MaLR 200 495 -10 4 881 1656 247 52 17 chr1 38856641 38857103 -158338329 - RCHARR1 DNA MER1_type 0 974 497 4 881 376 324 83 22 chr1 38857106 38857286 -158338146 + MTC LTR MaLR 5 195 -226 4 881 360 275 0 24 chr1 38858039 38858121 -158337311 + RSINE1 SINE B4 57 136 -29 4 881 2211 86 12 63 chr1 38859197 38859532 -158335900 + ORR1A3 LTR MaLR 1 318 -8 4 881 529 268 139 21 chr1 38860070 38860257 -158335175 - B3 SINE B2 -4 212 4 4 881 374 318 23 23 chr1 38860268 38860400 -158335032 + MER58A DNA MER1_type 48 179 -45 4 881 380 259 88 29 chr1 38860446 38860600 -158334832 - MER2 DNA MER2_type -59 286 116 4 881 332 270 44 18 chr1 38860570 38860683 -158334749 - PB1 SINE Alu 0 127 12 4 881 272 304 42 42 chr1 38863178 38863274 -158332158 + MLT1J1 LTR MaLR 3 98 -346 4 881 185 196 63 111 chr1 38863274 38863337 -158332095 - L4 LINE RTE -1349 680 621 4 881 236 280 85 111 chr1 38865005 38865042 -158330390 - YREP_Mm Unknown Unknown -1442 370 278 4 881 325 262 17 127 chr1 38865042 38865058 -158330374 + MT2B LTR ERVL 153 155 -446 4 881 863 174 7 7 chr1 38865058 38865203 -158330229 + B1_Mus1 SINE Alu 2 146 -2 4 881 236 280 85 111 chr1 38865160 38865194 -158330238 - YREP_Mm Unknown Unknown -1442 277 187 4 881 1384 89 5 0 chr1 38867576 38867766 -158327666 + B2_Mm1a SINE B2 2 192 -1 4 881 2201 128 88 13 chr1 38868853 38869241 -158326191 + MTC LTR MaLR 3 419 -2 4 881 315 0 0 0 chr1 38869242 38869277 -158326155 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 881 209 170 0 36 chr1 38869600 38869655 -158325777 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 881 1181 41 14 0 chr1 38869743 38869888 -158325544 - B1_Mus2 SINE Alu 0 147 1 4 881 180 77 0 0 chr1 38870319 38870345 -158325087 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 4 881 271 301 17 169 chr1 38870375 38870547 -158324885 + B4A SINE B4 1 146 -146 4 881 8014 70 16 6 chr1 38870547 38872328 -158323104 + L1_Mus1 LINE L1 4773 6567 0 4 881 281 312 26 0 chr1 38872333 38872410 -158323022 + B4A SINE B4 202 280 -12 4 881 23 68 0 0 chr1 38875289 38875333 -158320099 + AT_rich Low_complexity Low_complexity 1 44 0 4 881 228 272 75 11 chr1 38875531 38875624 -158319808 - L1MDa LINE L1 -784 6238 6140 4 881 301 307 88 78 chr1 38875789 38875998 -158319434 - B3A SINE B2 0 195 1 4 881 300 285 127 24 chr1 38876001 38876339 -158319093 - L1MDa LINE L1 -3037 3969 3597 4 881 291 222 30 0 chr1 38876619 38876699 -158318733 - L1MDa LINE L1 -4765 2337 2272 4 881 487 272 246 41 chr1 38876757 38877204 -158318228 - L1MDa LINE L1 -4784 2318 1808 4 881 253 312 13 25 chr1 38877871 38877950 -158317482 + B4A SINE B4 24 101 -191 5 881 444 304 8 60 chr1 38878656 38878789 -158316643 + B4A SINE B4 10 135 -157 5 881 2593 154 98 10 chr1 38878908 38879387 -158316045 + RLTR28 LTR ERVL 2 522 -2 5 881 848 172 56 82 chr1 38879444 38879602 -158315830 + RMER15 LTR ERVL 385 531 -44 5 881 387 0 0 0 chr1 38879602 38879645 -158315787 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 881 848 172 56 82 chr1 38879645 38879682 -158315750 + RMER15 LTR ERVL 532 575 0 5 881 522 244 153 38 chr1 38879700 38879909 -158315523 - Cheshire DNA MER1_type -178 2242 2010 5 881 1060 189 36 0 chr1 38879920 38880116 -158315316 - B3 SINE B2 -13 203 1 5 881 1469 190 138 30 chr1 38880223 38880586 -158314846 + RodERV21-int LTR ERV1 629 1030 -3961 5 881 1333 212 102 41 chr1 38880585 38880929 -158314503 + RodERV21-int LTR ERV1 3524 3888 -1103 5 881 2644 202 84 9 chr1 38880934 38881494 -158313938 + RodERV21-int LTR ERV1 4055 4656 -335 5 881 258 56 0 0 chr1 38881498 38881534 -158313898 + (A)n Simple_repeat Simple_repeat 1 36 0 5 881 269 269 0 0 chr1 38881561 38881628 -158313804 + Lx8 LINE L1 7290 7356 -117 5 881 417 303 65 110 chr1 38881660 38881905 -158313527 - Cheshire DNA MER1_type -404 2016 1783 5 881 915 224 0 12 chr1 38882167 38882339 -158313093 + B3 SINE B2 2 171 -45 5 881 339 262 177 30 chr1 38884213 38884512 -158310920 - L1M4 LINE L1 -1764 4382 4040 5 881 222 62 0 0 chr1 38884774 38884806 -158310626 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 881 252 197 51 26 chr1 38884813 38884891 -158310541 - L1M4 LINE L1 -2992 3154 3075 5 881 294 401 27 7 chr1 38884997 38885145 -158310287 - RSINE1 SINE B4 -12 153 3 5 881 387 292 86 89 chr1 38885276 38885568 -158309864 + MLT1A1 LTR MaLR 67 389 -19 5 881 229 309 90 56 chr1 38886319 38886408 -158309024 - RSINE1 SINE B4 -72 93 2 5 881 296 269 13 0 chr1 38886894 38886972 -158308460 - L1MEg LINE L1 -4735 1349 1271 5 881 1494 205 158 3 chr1 38887201 38887564 -158307868 - MTD LTR MaLR -14 405 1 5 881 435 258 0 0 chr1 38887679 38887834 -158307598 + (TG)n Simple_repeat Simple_repeat 2 156 0 5 881 809 157 27 15 chr1 38887797 38888133 -158307299 + (TATG)n Simple_repeat Simple_repeat 1 339 0 5 881 344 289 0 0 chr1 38888426 38888509 -158306923 - ID4_ SINE ID 0 83 1 5 881 381 282 116 86 chr1 38888653 38888921 -158306511 - L1ME3 LINE L1 -9 6153 5878 5 881 2411 78 3 58 chr1 38889027 38889369 -158306063 + ORR1A2 LTR MaLR 1 323 -4 5 881 10467 141 67 12 chr1 38889377 38891238 -158304194 + ORR1A2-int LTR MaLR 1 1963 0 5 881 2421 77 3 58 chr1 38891238 38891584 -158303848 + ORR1A2 LTR MaLR 1 327 0 5 881 577 238 112 36 chr1 38891852 38892048 -158303384 - B3 SINE B2 -4 212 2 5 881 27 0 0 0 chr1 38892282 38892309 -158303123 + AT_rich Low_complexity Low_complexity 1 27 0 5 881 23 33 0 0 chr1 38892879 38892909 -158302523 + GC_rich Low_complexity Low_complexity 1 30 0 5 881 23 0 0 0 chr1 38894275 38894298 -158301134 + AT_rich Low_complexity Low_complexity 1 23 0 5 881 232 178 27 0 chr1 38894947 38895020 -158300412 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 881 498 236 10 2 chr1 38895033 38895648 -158299784 + (CA)n Simple_repeat Simple_repeat 1 620 0 5 881 250 260 58 86 chr1 38895661 38895800 -158299632 + Charlie10 DNA MER1_type 939 1073 -1749 5 881 467 194 53 11 chr1 38895800 38895894 -158299538 - MTE2b LTR MaLR 0 379 282 5 881 778 289 43 62 chr1 38896390 38896666 -158298766 - MTE2b LTR MaLR -94 285 15 5 881 473 337 83 7 chr1 38897008 38897286 -158298146 + Charlie10 DNA MER1_type 1522 1820 -1002 5 881 229 279 76 65 chr1 38897247 38897339 -158298093 + Zaphod DNA Tip100 2779 2871 -1160 5 881 233 305 92 34 chr1 38897372 38897579 -158297853 + RLTR21 LTR ERVK 1088 1306 -266 5 881 357 145 0 0 chr1 38897606 38897668 -158297764 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 881 665 299 75 30 chr1 38897695 38897961 -158297471 - B4A SINE B4 -13 279 2 5 881 305 272 0 0 chr1 38897961 38898028 -158297404 - ID4 SINE ID -62 90 24 5 881 360 277 50 71 chr1 38898039 38898089 -158297343 + Charlie10 DNA MER1_type 1984 2035 -787 5 881 1076 95 0 0 chr1 38898089 38898236 -158297196 + B1_Mus1 SINE Alu 2 148 0 5 881 360 277 50 71 chr1 38898236 38898325 -158297107 + Charlie10 DNA MER1_type 2036 2120 -702 5 881 1130 163 61 34 chr1 38898343 38898620 -158296812 - MTD LTR MaLR -14 405 15 5 881 330 26 0 0 chr1 38898620 38898659 -158296773 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5 881 370 206 83 56 chr1 38898659 38898672 -158296760 - MTD LTR MaLR -407 14 4 5 881 336 245 17 121 chr1 38898672 38898788 -158296644 + Charlie10 DNA MER1_type 2124 2227 -595 5 881 1100 101 0 7 chr1 38899178 38899327 -158296105 - B1_Mus1 SINE Alu 0 148 1 5 881 888 286 37 31 chr1 38899465 38899776 -158295656 + RLTR16 LTR ERVK 1 372 -320 5 881 315 0 0 0 chr1 38899811 38899846 -158295586 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 881 211 146 24 0 chr1 38900518 38900559 -158294873 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 881 336 315 95 36 chr1 38900592 38900760 -158294672 - MLT1A1 LTR MaLR -216 192 15 5 881 623 254 58 37 chr1 38900840 38901028 -158294404 - B3A SINE B2 -5 193 2 5 881 269 362 38 50 chr1 38901153 38901313 -158294119 + MER5A1 DNA MER1_type 2 159 -7 5 881 4794 38 6 0 chr1 38901550 38902331 -158293101 - L1Md_F2 LINE L1 -498 6084 5299 5 881 3802 62 0 14 chr1 38902333 38902825 -158292607 + L1Md_F2 LINE L1 6098 6582 0 5 881 191 361 0 16 chr1 38902900 38902962 -158292470 + MIR3 SINE MIR 12 72 -136 5 881 348 236 28 0 chr1 38903565 38903637 -158291795 + ID4_ SINE ID 2 75 -8 5 881 838 214 35 76 chr1 38904229 38904426 -158291006 - B3A SINE B2 -1 197 9 5 881 251 225 0 14 chr1 38904551 38904623 -158290809 + GA-rich Low_complexity Low_complexity 3 73 0 5 881 321 208 34 17 chr1 38905287 38905463 -158289969 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 881 273 290 96 11 chr1 38905479 38905573 -158289859 - RMER12 LTR ERVK -474 848 747 5 881 500 296 222 29 chr1 38905781 38906107 -158289325 + L1MEg LINE L1 975 1377 -5957 5 881 378 0 0 0 chr1 38906107 38906149 -158289283 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 881 500 296 222 29 chr1 38906149 38906312 -158289120 + L1MEg LINE L1 1378 1559 -5775 5 881 1349 228 82 15 chr1 38906596 38906926 -158288506 - ORR1E LTR MaLR -5 354 3 5 881 267 31 0 0 chr1 38907091 38907123 -158288309 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 881 556 328 70 26 chr1 38907200 38907748 -158287684 + L1MEg LINE L1 1906 2483 -4619 5 881 386 326 39 135 chr1 38907781 38908136 -158287296 + L1MEg LINE L1 2539 2859 -4475 5 881 252 260 52 52 chr1 38908236 38908313 -158287119 - MLT1C LTR MaLR -131 336 260 5 881 436 309 27 0 chr1 38909993 38910103 -158285329 - ID_B1 SINE B4 -31 193 81 5 881 215 301 26 13 chr1 38910674 38910829 -158284603 + GA-rich Low_complexity Low_complexity 1 157 0 5 881 227 330 10 62 chr1 38910895 38910992 -158284440 - MLT1C LTR MaLR -257 117 26 5 881 2138 99 0 62 chr1 38911921 38912244 -158283188 + ORR1A2 LTR MaLR 25 327 0 5 881 21 36 0 0 chr1 38913657 38913685 -158281747 + AT_rich Low_complexity Low_complexity 1 28 0 5 881 210 200 0 0 chr1 38913725 38913771 -158281661 + T-rich Low_complexity Low_complexity 10 55 0 5 881 914 191 138 0 chr1 38913771 38913960 -158281472 - B3 SINE B2 0 216 2 5 881 189 0 0 0 chr1 38914024 38914045 -158281387 + (T)n Simple_repeat Simple_repeat 1 21 0 5 881 984 82 82 0 chr1 38914051 38914186 -158281246 - B1_Mus1 SINE Alu -1 147 2 5 881 358 203 27 0 chr1 38914351 38914425 -158281007 + ID4_ SINE ID 2 77 -6 5 881 366 320 111 52 chr1 38914426 38914795 -158280637 + L1MB7 LINE L1 5603 5993 -191 5 881 508 125 0 0 chr1 38915057 38915129 -158280303 - ORR1C1 LTR MaLR -7 377 306 5 881 549 184 10 0 chr1 38915127 38915225 -158280207 - ORR1C1 LTR MaLR -279 99 1 5 881 287 300 0 0 chr1 38915903 38915973 -158279459 + RSINE1 SINE B4 3 72 -93 5 881 1364 134 133 12 chr1 38915969 38916225 -158279207 - ORR1B2 LTR MaLR -80 287 1 5 881 231 372 25 0 chr1 38916576 38916697 -158278735 + MLT1A LTR MaLR 242 365 -9 5 881 5218 138 63 12 chr1 38916697 38917555 -158277877 + RMER19B LTR ERVK 1 902 0 5 881 340 261 198 6 chr1 38917590 38917752 -158277680 + MLT-int LTR MaLR 22 214 -1521 5 881 454 254 0 35 chr1 38917767 38917881 -158277551 + B3A SINE B2 2 111 -87 5 881 444 238 46 28 chr1 38918128 38918236 -158277196 + B3 SINE B2 68 177 -39 5 881 342 0 0 0 chr1 38918276 38918314 -158277118 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 881 551 290 157 14 chr1 38918318 38918528 -158276904 + MLT-int LTR MaLR 244 483 -1252 5 881 441 286 209 11 chr1 38918576 38918753 -158276679 + Tigger5 DNA MER2_type 31 242 -2164 5 881 354 241 58 0 chr1 38918749 38918836 -158276596 + Tigger5 DNA MER2_type 2291 2382 -24 5 881 1008 214 200 120 chr1 38919084 38919462 -158275970 + MT2A LTR ERVL 5 461 -72 5 881 3322 31 20 2 chr1 38919462 38919855 -158275577 + MTB LTR MaLR 1 400 0 5 881 1008 213 204 123 chr1 38919855 38919966 -158275466 + MT2A LTR ERVL 462 533 0 5 881 217 129 20 0 chr1 38923031 38923071 -158272361 - MIRc SINE MIR -55 153 114 5 881 396 0 0 0 chr1 38923873 38923917 -158271515 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 881 848 278 234 31 chr1 38925408 38925532 -158269900 + RLTR16 LTR ERVK 24 155 -413 5 881 573 15 0 0 chr1 38925532 38925598 -158269834 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 881 1292 151 68 55 chr1 38925598 38925892 -158269540 + RLTR16 LTR ERVK 156 526 -42 5 881 267 295 52 120 chr1 38926407 38926808 -158268624 + RMER10A LTR ERVL 42 415 -27 5 881 230 196 0 38 chr1 38927235 38927288 -158268144 + Lx9 LINE L1 7157 7207 -437 5 881 338 242 0 0 chr1 38928193 38928274 -158267158 + BC1_Mm scRNA scRNA 6 86 -66 5 882 339 25 0 0 chr1 38929331 38929371 -158266061 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 882 241 213 46 62 chr1 38930283 38930348 -158265084 - MER46C DNA MER2_type -11 327 264 5 882 254 250 80 40 chr1 38930442 38930517 -158264915 - ID4_ SINE ID -3 80 3 5 882 910 301 150 16 chr1 38931031 38931736 -158263696 + L1MD2 LINE L1 5157 5956 -403 5 882 393 261 36 26 chr1 38931784 38931901 -158263531 + B1F1 SINE Alu 4 116 -1 5 882 831 212 79 5 chr1 38932069 38932259 -158263173 - B3 SINE B2 -12 204 1 5 882 228 246 0 0 chr1 38932266 38932327 -158263105 + L1MD2 LINE L1 6297 6357 -2 5 882 2571 77 3 0 chr1 38932413 38932737 -158262695 + ORR1A2 LTR MaLR 3 327 0 5 882 1198 119 45 0 chr1 38932912 38933089 -158262343 + B2_Mm2 SINE B2 1 185 -10 5 882 22 0 0 0 chr1 38933207 38933229 -158262203 + AT_rich Low_complexity Low_complexity 1 22 0 5 882 725 243 134 26 chr1 38933230 38933424 -158262008 - B3 SINE B2 0 216 2 5 882 296 273 15 0 chr1 38933806 38933872 -158261560 - MamRep1161 DNA TcMar -871 86 20 5 882 187 197 43 116 chr1 38933968 38934037 -158261395 - L3 LINE CR1 -4393 96 33 5 882 6129 114 12 0 chr1 38934896 38936315 -158259117 + L1_Mus2 LINE L1 678 2114 -3769 5 882 7728 73 7 5 chr1 38936315 38937770 -158257662 + L1_Mus2 LINE L1 5109 6566 0 5 882 243 88 0 0 chr1 38938168 38938202 -158257230 + (T)n Simple_repeat Simple_repeat 1 34 0 5 882 5240 34 0 19 chr1 38938529 38939163 -158256269 + L1Md_F2 LINE L1 5961 6582 0 6 882 553 279 16 0 chr1 38939176 38939298 -158256134 + RSINE1 SINE B4 4 127 -38 6 882 270 295 78 26 chr1 38939526 38939641 -158255791 - PB1 SINE Alu 0 127 7 6 882 209 295 64 0 chr1 38942251 38942329 -158253103 - L3 LINE CR1 -73 4416 4334 6 882 343 310 152 0 chr1 38942569 38942673 -158252759 + MER53 DNA hAT 2 117 -76 6 882 486 0 0 0 chr1 38942673 38942727 -158252705 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 882 343 310 152 0 chr1 38942727 38942780 -158252652 + MER53 DNA hAT 118 182 -11 6 882 660 150 0 0 chr1 38943328 38943441 -158251991 + CT-rich Low_complexity Low_complexity 1 113 0 6 882 1796 78 141 4 chr1 38943441 38943710 -158251722 - Lx2 LINE L1 -4 6993 6688 6 882 279 0 0 0 chr1 38944257 38944288 -158251144 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 882 651 13 0 0 chr1 38944368 38944444 -158250988 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 882 195 69 0 0 chr1 38944508 38944537 -158250895 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 6 882 204 40 0 0 chr1 38945333 38945358 -158250074 + (A)n Simple_repeat Simple_repeat 1 25 0 6 882 794 216 15 73 chr1 38945448 38945653 -158249779 + B3A SINE B2 6 198 0 6 882 33 0 0 0 chr1 38946391 38946424 -158249008 + AT_rich Low_complexity Low_complexity 1 33 0 6 882 783 84 33 8 chr1 38946424 38946544 -158248888 - B1_Mus1 SINE Alu 0 148 26 6 882 807 253 0 11 chr1 38947024 38947208 -158248224 + B3A SINE B2 1 182 -16 6 882 372 278 225 4 chr1 38947352 38947583 -158247849 + RMER5 LTR ERV1 222 503 -31 6 882 776 145 35 28 chr1 38947570 38947766 -158247666 - B3 SINE B2 -1 194 1 6 882 735 311 30 66 chr1 38948466 38948704 -158246728 + B4 SINE B4 1 227 -65 6 882 758 238 70 0 chr1 38948704 38948889 -158246543 + B3A SINE B2 1 198 0 6 882 735 311 30 66 chr1 38948889 38948953 -158246479 + B4 SINE B4 228 291 -1 6 882 1552 43 5 0 chr1 38949021 38949209 -158246223 + B2_Mm1t SINE B2 2 190 -3 6 882 271 224 0 0 chr1 38949505 38949563 -158245869 - MER5A1 DNA MER1_type -6 160 103 6 882 602 262 34 7 chr1 38951535 38951681 -158243751 + RSINE1 SINE B4 3 152 -13 6 882 306 0 0 0 chr1 38951689 38951723 -158243709 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 882 278 230 68 0 chr1 38952917 38952991 -158242441 + ID_B1 SINE B4 146 224 0 6 882 25 31 0 0 chr1 38953197 38953229 -158242203 + AT_rich Low_complexity Low_complexity 1 32 0 6 882 207 0 0 0 chr1 38953721 38953744 -158241688 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 882 22 0 0 0 chr1 38955222 38955244 -158240188 + AT_rich Low_complexity Low_complexity 1 22 0 6 882 384 310 14 21 chr1 38955341 38955486 -158239946 - B1F SINE Alu 0 149 6 6 882 625 266 25 25 chr1 38955521 38955718 -158239714 - B3A SINE B2 -1 197 1 6 882 597 142 88 0 chr1 38955751 38955864 -158239568 + B1_Mus2 SINE Alu 3 125 -22 6 882 378 0 0 0 chr1 38955866 38955908 -158239524 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 882 306 0 0 0 chr1 38955908 38955942 -158239490 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 882 369 0 0 0 chr1 38955942 38955982 -158239450 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 882 396 0 0 0 chr1 38957093 38957137 -158238295 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 882 1503 176 50 10 chr1 38957796 38958095 -158237337 + ORR1D1 LTR MaLR 64 374 0 6 882 418 276 60 164 chr1 38958095 38958393 -158237039 - MTE2a LTR MaLR -56 323 57 6 882 355 256 60 113 chr1 38958679 38958864 -158236568 + Charlie1a DNA MER1_type 557 731 -724 6 882 347 0 23 0 chr1 38958867 38958910 -158236522 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 6 882 938 0 33 0 chr1 38959297 38959419 -158236013 + (CA)n Simple_repeat Simple_repeat 1 126 0 6 882 297 298 73 0 chr1 38959541 38959665 -158235767 + ORR1E LTR MaLR 1 133 -226 6 882 328 287 43 17 chr1 38959662 38959779 -158235653 + MER21B LTR ERV1 620 739 -124 6 882 592 316 126 14 chr1 38959834 38960347 -158235085 + Charlie1a DNA MER1_type 882 1451 -4 6 882 23 0 0 0 chr1 38960387 38960410 -158235022 + AT_rich Low_complexity Low_complexity 1 23 0 6 882 375 211 174 0 chr1 38961382 38961491 -158233941 + B3A SINE B2 1 128 -70 6 882 895 107 0 12 chr1 38961503 38961674 -158233758 + (TC)n Simple_repeat Simple_repeat 1 169 0 6 882 342 0 0 0 chr1 38961674 38961711 -158233721 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 882 229 289 86 0 chr1 38961762 38961890 -158233542 - L1MD LINE L1 -1860 4286 4148 6 882 386 173 26 13 chr1 38961949 38962025 -158233407 + PB1D10 SINE Alu 15 91 -26 6 882 252 219 15 15 chr1 38962049 38962114 -158233318 + L1MB8 LINE L1 5072 5136 -1010 6 882 252 250 14 27 chr1 38962362 38962436 -158232996 + RLTR25B LTR ERVK 427 499 -529 6 882 604 162 0 0 chr1 38962379 38962484 -158232948 + B1_Mm SINE Alu 43 147 0 6 882 180 97 0 0 chr1 38962487 38962518 -158232914 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 882 915 109 35 0 chr1 38962726 38962900 -158232532 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 882 504 132 0 0 chr1 38963426 38963509 -158231923 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 882 243 317 32 8 chr1 38963572 38963696 -158231736 - ORR1E LTR MaLR -232 127 1 6 882 1212 281 75 68 chr1 38963702 38964408 -158231024 + L1MB8 LINE L1 5258 5968 -210 6 882 31 68 0 0 chr1 38965570 38965629 -158229803 + AT_rich Low_complexity Low_complexity 1 59 0 6 882 824 252 123 43 chr1 38965810 38966074 -158229358 + MTD LTR MaLR 52 313 -66 6 882 1321 105 15 25 chr1 38966074 38966270 -158229162 - B2_Mm2 SINE B2 -1 194 1 6 882 653 251 136 47 chr1 38966270 38966338 -158229094 + MTD LTR MaLR 314 379 0 6 882 228 261 193 26 chr1 38966535 38966649 -158228783 + L1MB8 LINE L1 6033 6165 -13 6 882 565 339 83 27 chr1 38966694 38966816 -158228616 + MLT2B1 LTR ERVL 3 141 -379 6 882 486 0 0 0 chr1 38966816 38966870 -158228562 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 882 565 345 102 22 chr1 38966870 38967115 -158228317 + MLT2B1 LTR ERVL 142 446 -69 6 882 288 0 0 0 chr1 38967138 38967170 -158228262 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 882 290 265 0 0 chr1 38967553 38967621 -158227811 + PB1D10 SINE Alu 50 117 0 6 882 459 0 0 0 chr1 38967635 38967686 -158227746 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 882 387 41 0 0 chr1 38967686 38967734 -158227698 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 882 284 298 17 50 chr1 38968878 38968998 -158226434 - Kanga11a DNA Tc2 -793 177 62 6 882 3370 116 25 12 chr1 38969480 38969996 -158225436 - L1_Mur2 LINE L1 -5985 727 205 6 882 1622 26 21 0 chr1 38970242 38970431 -158225001 - B2_Mm1t SINE B2 0 193 1 6 882 285 323 68 34 chr1 38970733 38970996 -158224436 + L1M5 LINE L1 3677 3948 -2198 6 882 843 301 50 28 chr1 38971374 38971733 -158223699 - MTEa LTR MaLR -12 367 1 6 882 2361 236 95 15 chr1 38971739 38972136 -158223296 - MTEa-int LTR MaLR -7 1573 1138 6 882 612 0 0 0 chr1 38972136 38972204 -158223228 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 882 2361 236 95 15 chr1 38972204 38972481 -158222951 - MTEa-int LTR MaLR -443 1137 845 6 882 225 315 0 0 chr1 38972770 38972862 -158222570 + (TGAG)n Simple_repeat Simple_repeat 4 95 0 6 882 262 364 9 0 chr1 38973027 38973147 -158222285 - B4 SINE B4 -170 122 2 6 882 234 0 0 0 chr1 38973208 38973234 -158222198 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 882 562 36 0 68 chr1 38973374 38973492 -158221940 + (TTAGG)n Simple_repeat Simple_repeat 1 110 0 6 882 539 211 20 36 chr1 38973776 38973936 -158221496 + B3 SINE B2 63 216 0 6 882 800 325 16 53 chr1 38973947 38974398 -158221034 - L1MD LINE L1 -1908 4238 3805 6 882 279 0 0 0 chr1 38974413 38974444 -158220988 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 6 882 248 0 31 0 chr1 38975225 38975257 -158220175 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 882 843 172 35 0 chr1 38976188 38976333 -158219099 + B1_Mur4 SINE Alu 1 150 0 6 882 985 215 14 10 chr1 38976726 38976933 -158218499 + B3 SINE B2 8 215 -1 6 882 33 56 0 0 chr1 38976934 38976988 -158218444 + AT_rich Low_complexity Low_complexity 1 54 0 6 882 358 353 17 0 chr1 38977016 38977135 -158218297 + MTEa LTR MaLR 63 183 -196 6 882 426 252 25 16 chr1 38977149 38977270 -158218162 + MTEa LTR MaLR 256 377 -2 6 882 1375 273 59 12 chr1 38977270 38977693 -158217739 + MTEa-int LTR MaLR 1 443 -1137 6 882 276 297 0 0 chr1 38977693 38977757 -158217675 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 882 483 228 6 24 chr1 38977769 38977935 -158217497 + (TATG)n Simple_repeat Simple_repeat 4 166 0 6 882 517 325 124 26 chr1 38977962 38978269 -158217163 + MTEa-int LTR MaLR 443 779 -801 6 882 10587 218 51 113 chr1 38978338 38981887 -158213545 + Lx7 LINE L1 897 4053 -1827 6 882 1960 122 117 44 chr1 38981887 38982254 -158213178 + ORR1B1 LTR MaLR 1 394 0 6 882 10587 219 47 113 chr1 38982254 38984273 -158211159 + Lx7 LINE L1 4054 6081 -1615 6 882 1729 235 147 80 chr1 38984270 38984609 -158210823 + Lx7 LINE L1 6647 7248 -448 6 882 4196 42 0 0 chr1 38984609 38985091 -158210341 - LTRIS_Mm LTR ERV1 0 482 1 6 882 1729 191 155 79 chr1 38985091 38985511 -158209921 + Lx7 LINE L1 6982 7696 0 6 882 183 80 0 0 chr1 38985686 38985711 -158209721 + (T)n Simple_repeat Simple_repeat 1 25 0 6 882 450 0 0 0 chr1 38986371 38986421 -158209011 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 882 279 330 10 0 chr1 38986576 38986676 -158208756 + MER34A LTR ERV1 1 101 -470 6 882 419 242 294 27 chr1 38986885 38987106 -158208326 - MLT1A1 LTR MaLR 0 408 129 6 882 246 275 29 0 chr1 38987517 38987586 -158207846 + MTE2b LTR MaLR 309 379 0 6 882 249 371 23 31 chr1 38987602 38987730 -158207702 + MLT1H LTR MaLR 177 303 -246 6 882 470 293 15 15 chr1 38988322 38988457 -158206975 + B3A SINE B2 16 150 -48 6 882 573 55 0 0 chr1 38988748 38988821 -158206611 + (TTCTC)n Simple_repeat Simple_repeat 2 74 0 6 882 218 211 0 0 chr1 38988821 38988859 -158206573 + polypyrimidine Low_complexity Low_complexity 2 39 0 6 882 650 250 47 0 chr1 38989004 38989152 -158206280 + RSINE1 SINE B4 5 159 -6 6 882 423 118 23 12 chr1 38989171 38989257 -158206175 + CT-rich Low_complexity Low_complexity 4 90 0 6 882 216 0 0 0 chr1 38989257 38989281 -158206151 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 882 256 300 211 13 chr1 38989326 38989478 -158205954 + Tigger5 DNA MER2_type 29 210 -2196 6 882 285 277 0 0 chr1 38989490 38989555 -158205877 + Tigger5 DNA MER2_type 2291 2355 -51 6 882 295 331 112 48 chr1 38989590 38989901 -158205531 - MER74A LTR ERVL -96 462 132 7 882 1370 245 74 68 chr1 38989932 38990432 -158205000 - RLTR16 LTR ERVK 0 505 3 7 882 245 340 20 20 chr1 38990601 38990700 -158204732 - ORR1E LTR MaLR -210 149 51 7 882 22 0 0 0 chr1 38990820 38990842 -158204590 + AT_rich Low_complexity Low_complexity 1 22 0 7 882 228 143 0 0 chr1 38990942 38990984 -158204448 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 882 582 248 6 25 chr1 38991599 38991756 -158203676 + B3A SINE B2 4 157 -41 7 882 1668 16 5 5 chr1 38992671 38992864 -158202568 + B2_Mm1a SINE B2 1 193 0 7 882 419 0 20 0 chr1 38993169 38993220 -158202212 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 7 882 239 154 10 90 chr1 38993276 38993376 -158202056 + (TATAA)n Simple_repeat Simple_repeat 5 96 0 7 882 503 241 9 0 chr1 38993382 38993494 -158201938 - MT2A LTR ERVL -74 459 347 7 882 609 240 0 30 chr1 38993506 38993639 -158201793 - MT2A LTR ERVL -404 129 1 7 882 1157 249 191 17 chr1 38993644 38994125 -158201307 - Lx8 LINE L1 -93 7380 6816 7 882 267 31 0 0 chr1 38994300 38994332 -158201100 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 882 213 325 35 11 chr1 38994525 38994612 -158200820 + MIRm SINE MIR 87 175 -101 7 882 470 204 18 36 chr1 38994831 38994943 -158200489 - PB1D9 SINE Alu -2 118 9 7 882 825 87 0 0 chr1 38994999 38995114 -158200318 - B1_Mus1 SINE Alu 0 148 34 7 882 447 68 0 0 chr1 38995238 38995297 -158200135 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 882 1095 192 18 22 chr1 38995325 38995549 -158199883 - Lx9 LINE L1 -205 7439 7217 7 882 442 176 28 0 chr1 38997561 38997669 -158197763 + (TATG)n Simple_repeat Simple_repeat 4 114 0 7 882 194 361 58 6 chr1 38999364 38999520 -158195912 + MIR SINE MIR 76 239 -23 7 882 647 25 12 0 chr1 38999572 38999653 -158195779 + (TC)n Simple_repeat Simple_repeat 1 82 0 7 882 207 280 79 13 chr1 39000390 39000466 -158194966 - L2a LINE L2 -56 3370 3290 1 882 1631 159 65 42 chr1 39001198 39001406 -158194026 - RMER17C LTR ERVK 0 410 196 2 882 197 65 0 31 chr1 39001406 39001438 -158193994 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 882 1631 159 65 42 chr1 39001438 39001630 -158193802 - RMER17C LTR ERVK -215 195 1 2 882 312 244 244 0 chr1 39001904 39001994 -158193438 - PB1D10 SINE Alu -5 112 1 4 882 278 49 24 0 chr1 39002603 39002644 -158192788 + B1_Mm SINE Alu 106 147 0 5 882 200 111 22 0 chr1 39002644 39002689 -158192743 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 6 882 349 299 78 16 chr1 39004226 39004355 -158191077 - MER5A DNA MER1_type -47 142 6 7 882 306 0 0 0 chr1 39004944 39004978 -158190454 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 882 229 291 142 28 chr1 39005005 39005111 -158190321 - MER103 DNA DNA -46 120 3 9 882 694 186 19 26 chr1 39006040 39006187 -158189245 - RMER20B LTR ERVK -369 147 1 1 882 2151 45 0 128 chr1 39008538 39008873 -158186559 - RLTR10B LTR ERVK 0 292 1 1 882 25808 63 6 1 chr1 39009134 39012459 -158182973 - Lx3B LINE L1 -1071 5902 2543 1 882 663 279 34 47 chr1 39012468 39012701 -158182731 - B4 SINE B4 -55 237 8 1 882 239 268 13 53 chr1 39012949 39013024 -158182408 + MIR SINE MIR 60 131 -131 1 882 225 0 0 0 chr1 39013463 39013488 -158181944 + (CAGGT)n Simple_repeat Simple_repeat 3 27 0 1 882 334 283 43 26 chr1 39013490 39013606 -158181826 - MLT1J1 LTR MaLR -322 122 5 1 882 387 0 0 0 chr1 39014108 39014151 -158181281 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 882 965 191 0 21 chr1 39015784 39015971 -158179461 + RMER19A LTR ERVK 1 183 -554 1 882 373 236 92 23 chr1 39016013 39016143 -158179289 + L1M4b LINE L1 1321 1459 -5875 1 882 782 287 93 15 chr1 39016251 39016520 -158178912 + B4A SINE B4 1 290 -2 2 882 315 269 0 0 chr1 39016539 39016669 -158178763 + (CA)n Simple_repeat Simple_repeat 1 130 0 2 882 302 253 13 13 chr1 39016677 39016753 -158178679 + HAL1-3A_ME LINE L1 1975 2050 -808 2 882 336 285 223 14 chr1 39016754 39017167 -158178265 + L1M4b LINE L1 1527 2025 -5309 1 882 845 91 8 0 chr1 39017181 39017302 -158178130 + ORR1A2 LTR MaLR 1 122 -205 2 882 573 15 0 0 chr1 39017302 39017368 -158178064 + (TTTTC)n Simple_repeat Simple_repeat 1 66 0 2 882 1208 94 0 11 chr1 39017368 39017550 -158177882 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 882 796 157 7 28 chr1 39017550 39017571 -158177861 + ORR1A2 LTR MaLR 123 140 -186 2 882 1124 58 0 0 chr1 39017578 39017716 -158177716 - B1_Mus1 SINE Alu 0 148 11 2 882 559 243 51 77 chr1 39017581 39017737 -158177695 - B4 SINE B4 -69 223 72 2 882 4834 71 0 5 chr1 39017737 39018377 -158177055 - L1_Mm LINE L1 -2041 3842 3206 2 882 253 224 60 0 chr1 39018375 39018442 -158176990 - L1MEf LINE L1 -4026 2174 2104 2 882 626 289 50 73 chr1 39018846 39019066 -158176366 + B3A SINE B2 1 215 -1 3 882 4311 111 74 2 chr1 39019072 39019704 -158175728 - RLTR33 LTR ERVK 0 678 1 3 882 313 281 107 34 chr1 39020118 39020359 -158175073 + B4A SINE B4 1 291 -1 3 882 1197 273 39 26 chr1 39022458 39022770 -158172662 + ORR1D2 LTR MaLR 42 357 -13 3 882 3018 201 130 35 chr1 39022894 39023619 -158171813 + RLTR40 LTR ERVK 1 794 -23 3 882 3456 223 43 16 chr1 39023634 39024382 -158171050 - Lx5 LINE L1 -17 7033 6266 3 882 2724 192 49 7 chr1 39024372 39024928 -158170504 + Lx5 LINE L1 5697 6275 -775 3 882 423 294 73 16 chr1 39024958 39025294 -158170138 + L1MCa LINE L1 2257 2610 -3711 3 882 785 278 55 6 chr1 39025464 39025669 -158169763 + B4A SINE B4 66 279 -13 3 882 192 77 0 0 chr1 39025673 39025699 -158169733 + (CG)n Simple_repeat Simple_repeat 2 27 0 3 882 243 0 0 0 chr1 39025699 39025725 -158169707 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 882 482 143 0 62 chr1 39026058 39026155 -158169277 + ORR1A2 LTR MaLR 1 91 -236 4 882 1952 115 24 11 chr1 39026125 39026459 -158168973 + ORR1A2 LTR MaLR 12 346 0 4 882 1659 94 0 0 chr1 39026459 39026683 -158168749 + ORR1A2-int LTR MaLR 1 224 -1739 4 882 5166 113 46 25 chr1 39026681 39027487 -158167945 + ORR1A2-int LTR MaLR 1141 1963 0 4 882 2602 68 6 0 chr1 39027487 39027812 -158167620 + ORR1A2 LTR MaLR 1 327 0 4 882 294 223 94 21 chr1 39027835 39027931 -158167501 - ORR1E LTR MaLR -237 122 20 4 882 438 296 58 100 chr1 39027959 39028115 -158167317 + L1MCa LINE L1 3170 3312 -3009 3 882 324 70 0 0 chr1 39028115 39028158 -158167274 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 882 438 288 63 131 chr1 39028158 39028439 -158166993 + L1MCa LINE L1 3313 3583 -2738 3 882 1053 122 23 28 chr1 39028494 39028671 -158166761 - B2_Mm2 SINE B2 -18 177 2 4 882 451 291 63 11 chr1 39028671 39028862 -158166570 + L1MCa LINE L1 3569 3769 -2552 3 882 184 122 0 47 chr1 39028959 39029002 -158166430 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 882 383 144 33 2 chr1 39029002 39029078 -158166354 + MTD LTR MaLR 289 410 -9 4 882 312 172 0 0 chr1 39029157 39029215 -158166217 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 4 882 501 302 138 43 chr1 39029219 39029544 -158165888 + L1MCa LINE L1 4280 4635 -1686 3 882 550 282 51 0 chr1 39029563 39029740 -158165692 + MTEb LTR MaLR 40 225 -154 4 882 1189 176 4 22 chr1 39030651 39030877 -158164555 - URR1B DNA MER1_type -2 223 2 4 882 180 0 0 0 chr1 39031083 39031103 -158164329 + (A)n Simple_repeat Simple_repeat 1 20 0 4 882 2451 154 29 10 chr1 39031280 39031693 -158163739 + MTC LTR MaLR 1 421 0 5 882 234 0 0 0 chr1 39032244 39032270 -158163162 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 882 362 341 29 29 chr1 39033231 39033370 -158162062 - MER3 DNA MER1_type -1 208 70 5 882 1012 120 0 20 chr1 39033368 39033521 -158161911 + ORR1A2-int LTR MaLR 1814 1963 0 5 882 2101 61 25 0 chr1 39033521 39033798 -158161634 + ORR1A2 LTR MaLR 1 284 -43 5 882 1257 108 11 0 chr1 39033813 39033989 -158161443 + B2_Mm1t SINE B2 2 179 -14 5 882 276 150 17 78 chr1 39034021 39034090 -158161342 + B2_Mm2 SINE B2 47 109 -107 5 882 872 325 82 45 chr1 39034446 39034848 -158160584 - RLTR26 LTR ERVK -225 417 1 5 882 597 293 70 122 chr1 39035602 39036002 -158159430 + MTEa LTR MaLR 1 379 0 5 882 24 0 0 0 chr1 39036576 39036600 -158158832 + AT_rich Low_complexity Low_complexity 1 24 0 5 882 302 295 101 0 chr1 39036611 39036750 -158158682 - L1M2 LINE L1 -5063 1786 1634 5 882 549 286 64 0 chr1 39036949 39037089 -158158343 + RSINE1 SINE B4 2 150 -15 6 882 222 231 0 0 chr1 39037089 39037154 -158158278 + CT-rich Low_complexity Low_complexity 4 68 0 6 882 2041 158 94 3 chr1 39037571 39037932 -158157500 - ORR1B1 LTR MaLR 0 394 1 6 882 480 72 0 0 chr1 39037956 39038025 -158157407 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 882 295 173 0 0 chr1 39038718 39038770 -158156662 + RMER10B LTR ERVL 1 52 -346 6 882 1384 45 0 11 chr1 39038760 39038939 -158156493 + MTB LTR MaLR 224 400 0 6 882 358 284 79 0 chr1 39039236 39039363 -158156069 + Lx9 LINE L1 7302 7438 -206 6 882 30 27 0 0 chr1 39039456 39039493 -158155939 + AT_rich Low_complexity Low_complexity 1 37 0 6 882 520 320 22 40 chr1 39039520 39039797 -158155635 - L1M2 LINE L1 -1136 5007 4736 6 882 1268 199 171 10 chr1 39039873 39039926 -158155506 - MTD LTR MaLR -58 361 303 6 882 1931 119 79 7 chr1 39039926 39040231 -158155201 - ORR1A2 LTR MaLR 0 327 1 7 882 1268 199 171 10 chr1 39040231 39040487 -158154945 - MTD LTR MaLR -117 302 3 6 882 229 256 11 34 chr1 39041351 39041440 -158153992 + Charlie22a DNA MER1_type 287 373 -118 7 882 336 277 16 111 chr1 39041361 39041487 -158153945 + Arthur1B DNA Tip100 1093 1206 -19 7 882 549 229 17 17 chr1 39041503 39041623 -158153809 - ORR1D2 LTR MaLR 0 370 251 7 882 2886 84 0 37 chr1 39041625 39042033 -158153399 + MTB LTR MaLR 1 393 -7 7 882 855 263 83 17 chr1 39042030 39042270 -158153162 - ORR1D2 LTR MaLR -114 256 1 7 882 1287 172 127 44 chr1 39042661 39042990 -158152442 - RMER16 LTR ERVK 0 533 1 7 882 328 158 70 0 chr1 39042990 39043045 -158152387 + PB1D10 SINE Alu 54 112 -5 7 882 233 330 10 20 chr1 39043089 39043191 -158152241 - L1M3 LINE L1 -1161 4979 4879 7 882 226 143 24 0 chr1 39043806 39043848 -158151584 - PB1D9 SINE Alu -1 119 77 7 882 296 264 0 0 chr1 39043839 39043892 -158151540 - PB1D7 SINE Alu -65 55 3 7 882 246 250 18 0 chr1 39043892 39043942 -158151490 + MER5B DNA MER1_type 116 166 -12 8 882 193 240 0 20 chr1 39045576 39045627 -158149805 + L2 LINE L2 3030 3079 -340 8 882 1486 163 65 14 chr1 39046132 39046424 -158149008 - MTC LTR MaLR -8 413 107 8 882 1505 68 0 5 chr1 39046424 39046616 -158148816 + B2_Mm2 SINE B2 2 192 -3 8 882 466 300 112 82 chr1 39046616 39046671 -158148761 - MTC LTR MaLR -319 60 4 8 882 2023 62 4 0 chr1 39046999 39047259 -158148173 - L1Md_A LINE L1 0 6582 6322 8 882 1182 266 23 13 chr1 39047317 39047622 -158147810 - MTD LTR MaLR -109 310 3 8 882 198 71 0 0 chr1 39048170 39048198 -158147234 + (GGA)n Simple_repeat Simple_repeat 1 28 0 8 882 190 378 0 11 chr1 39048828 39048919 -158146513 - L2a LINE L2 -19 3407 3318 8 882 188 245 176 0 chr1 39048950 39049052 -158146380 - L2a LINE L2 -207 3219 3100 8 882 597 311 219 21 chr1 39049119 39049576 -158145856 - L2a LINE L2 -456 2963 2436 8 882 744 196 52 52 chr1 39049576 39049770 -158145662 - B3A SINE B2 -3 195 2 8 882 597 311 219 21 chr1 39049770 39049920 -158145512 - L2a LINE L2 -984 2435 2237 8 882 360 214 14 7 chr1 39049948 39050033 -158145399 - B1_Mur4 SINE Alu -9 141 22 8 882 879 240 33 38 chr1 39050239 39050451 -158144981 + B3 SINE B2 1 211 -5 9 882 551 241 7 27 chr1 39050453 39050602 -158144830 - B1_Mm SINE Alu 0 147 2 9 882 765 121 26 96 chr1 39051107 39051263 -158144169 + URR1A DNA MER1_type 82 226 0 9 882 260 346 18 30 chr1 39051310 39051477 -158143955 - RLTR42-int LTR ERVK -4205 1317 1153 9 882 25 0 0 0 chr1 39053227 39053252 -158142180 + AT_rich Low_complexity Low_complexity 1 25 0 9 882 645 189 47 8 chr1 39053722 39053850 -158141582 + B1_Mur1 SINE Alu 9 141 -8 9 882 746 136 380 6 chr1 39054357 39054520 -158140912 + URR1A DNA MER1_type 1 224 -2 9 882 369 317 84 0 chr1 39054989 39055156 -158140276 - B3A SINE B2 -16 182 2 9 882 459 0 0 0 chr1 39055465 39055516 -158139916 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 882 432 216 48 29 chr1 39055554 39055659 -158139773 + L1MC3 LINE L1 7257 7363 -422 9 882 313 279 39 47 chr1 39055918 39056046 -158139386 - LTR16E1 LTR ERVL -2 536 410 1 882 346 255 125 43 chr1 39056241 39056406 -158139026 - LTR16E1 LTR ERVL -219 319 84 1 882 4261 241 86 75 chr1 39056568 39057957 -158137475 - Lx5 LINE L1 -18 7032 5629 1 882 764 150 17 0 chr1 39057939 39058059 -158137373 + L1_Mur3 LINE L1 5496 5617 -263 1 882 278 280 0 130 chr1 39058059 39058174 -158137258 - Kanga1a DNA Tc2 -376 378 279 1 882 180 49 0 89 chr1 39058845 39058890 -158136542 + (CCCCCA)n Simple_repeat Simple_repeat 3 43 0 1 882 284 218 101 13 chr1 39059071 39059150 -158136282 + MER119 DNA MER1_type 148 233 -350 1 110 2519 188 22 20 chr1 39059169 39059658 -158135774 + RMER5 LTR ERV1 43 532 -2 1 883 1159 62 14 0 chr1 39059778 39059923 -158135509 + B1_Mm SINE Alu 1 147 0 1 883 188 149 0 21 chr1 39059923 39059971 -158135461 + A-rich Low_complexity Low_complexity 2 48 0 1 883 309 205 34 43 chr1 39060004 39060121 -158135311 + MER119 DNA MER1_type 382 497 -86 1 883 212 256 131 24 chr1 39060573 39060657 -158134775 + MIRb SINE MIR 112 204 -64 1 883 2223 117 133 5 chr1 39061642 39062011 -158133421 + MTC LTR MaLR 6 421 0 1 883 522 0 0 0 chr1 39062087 39062145 -158133287 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 883 1577 147 6 148 chr1 39063454 39063932 -158131500 - RMER17C LTR ERVK 0 410 1 1 883 3238 58 0 2 chr1 39065433 39065828 -158129604 + MTA_Mm LTR MaLR 3 396 0 1 883 255 240 15 96 chr1 39066056 39066216 -158129216 - L1_Mur3 LINE L1 -500 5668 5530 1 883 2297 119 14 30 chr1 39066230 39066595 -158128837 - ORR1B2 LTR MaLR -8 359 1 1 883 399 289 69 39 chr1 39066609 39066910 -158128522 - L1_Mur3 LINE L1 -652 5504 5158 1 883 1167 62 14 0 chr1 39067111 39067256 -158128176 - B1_Mus1 SINE Alu 0 148 2 1 883 216 268 35 18 chr1 39067329 39067386 -158128046 - ID2 SINE ID -9 74 17 1 883 460 265 98 8 chr1 39068136 39068269 -158127163 + B1F1 SINE Alu 3 147 -2 1 883 255 301 0 24 chr1 39068304 39068389 -158127043 + ID4 SINE ID 1 83 0 1 883 340 82 34 45 chr1 39068642 39068731 -158126701 + A-rich Low_complexity Low_complexity 3 90 0 1 883 32 0 0 0 chr1 39068891 39068923 -158126509 + AT_rich Low_complexity Low_complexity 1 32 0 1 883 366 277 109 0 chr1 39069008 39069109 -158126323 - ID_B1 SINE B4 -16 208 97 1 883 644 130 9 0 chr1 39070654 39070769 -158124663 + (CA)n Simple_repeat Simple_repeat 2 117 0 1 883 261 352 21 21 chr1 39071877 39071970 -158123462 + MTEb LTR MaLR 273 365 -14 1 883 231 286 32 42 chr1 39072579 39072674 -158122758 + L2 LINE L2 2744 2837 -582 1 883 288 0 0 0 chr1 39073141 39073173 -158122259 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 883 735 265 165 30 chr1 39073173 39073222 -158122210 - B4 SINE B4 -23 269 216 1 883 183 42 0 0 chr1 39073222 39073246 -158122186 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 883 735 265 165 30 chr1 39073246 39073433 -158121999 - B4 SINE B4 -77 215 1 1 883 340 215 145 43 chr1 39073480 39073642 -158121790 + MTE2b LTR MaLR 166 379 0 1 883 2283 150 40 0 chr1 39074345 39074724 -158120708 + ORR1B1 LTR MaLR 1 394 0 1 883 1199 162 40 274 chr1 39075611 39076111 -158119321 - ORR1C2 LTR MaLR -1 383 1 1 883 240 0 75 0 chr1 39078884 39078924 -158116508 + (CTGGGG)n Simple_repeat Simple_repeat 5 47 0 1 883 751 259 83 0 chr1 39078925 39079118 -158116314 + B3 SINE B2 8 216 0 1 883 228 67 0 0 chr1 39079415 39079445 -158115987 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1 883 215 287 174 41 chr1 39079616 39079834 -158115598 - L2 LINE L2 -604 2815 2569 1 883 336 167 0 0 chr1 39080125 39080185 -158115247 + HAL1-3A_ME LINE L1 1959 2018 -840 1 883 297 295 0 0 chr1 39080208 39080357 -158115075 + (CA)n Simple_repeat Simple_repeat 2 150 0 1 883 329 333 102 62 chr1 39080719 39080975 -158114457 + RMER15 LTR ERVL 289 554 -21 1 883 895 206 152 22 chr1 39080986 39081209 -158114223 + ORR1E LTR MaLR 106 357 -2 1 883 642 117 0 0 chr1 39081704 39081815 -158113617 + (CA)n Simple_repeat Simple_repeat 1 111 0 1 883 180 0 0 0 chr1 39083164 39083184 -158112248 + (A)n Simple_repeat Simple_repeat 1 20 0 1 883 2951 82 25 5 chr1 39084159 39084551 -158110881 + MTB LTR MaLR 1 400 0 1 883 327 230 22 44 chr1 39084867 39084958 -158110474 + MLT1A1 LTR MaLR 320 408 0 1 883 961 163 81 109 chr1 39085084 39085332 -158110100 + Lx4A LINE L1 6818 7058 0 1 883 1584 33 6 0 chr1 39085354 39085537 -158109895 + B2_Mm1t SINE B2 2 185 -8 1 883 212 295 0 128 chr1 39085876 39085985 -158109447 + L2c LINE L2 3293 3387 0 1 883 450 251 6 11 chr1 39086281 39086462 -158108970 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 883 488 317 118 45 chr1 39086791 39087388 -158108044 - L1MD1 LINE L1 -299 6334 5671 1 883 288 0 0 0 chr1 39087388 39087420 -158108012 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 883 488 217 162 63 chr1 39087420 39087618 -158107814 - L1MD1 LINE L1 -867 5670 5476 1 883 339 185 11 21 chr1 39087751 39087845 -158107587 + CT-rich Low_complexity Low_complexity 2 94 0 1 883 1302 296 117 13 chr1 39087845 39088520 -158106912 - L1MD1 LINE L1 -1790 4747 4003 1 883 437 312 48 27 chr1 39088500 39088768 -158106664 - L1MD1 LINE L1 -3282 3255 2979 1 883 325 328 171 5 chr1 39088822 39089027 -158106405 - L1MD1 LINE L1 -3653 2884 2646 1 883 213 39 0 0 chr1 39089548 39089574 -158105858 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 883 889 129 45 0 chr1 39089574 39089706 -158105726 - B1_Mus1 SINE Alu -10 138 1 1 883 281 305 121 79 chr1 39089888 39090393 -158105039 - L1MD1 LINE L1 -4556 2077 1552 1 883 299 252 19 9 chr1 39090565 39090673 -158104759 + (TTTG)n Simple_repeat Simple_repeat 4 112 0 1 883 325 297 0 0 chr1 39090684 39090758 -158104674 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 1 883 331 275 0 0 chr1 39090694 39090763 -158104669 - ID4_ SINE ID -13 70 2 1 883 229 303 29 48 chr1 39090771 39090875 -158104557 - PB1D10 SINE Alu 0 117 16 1 883 273 317 71 51 chr1 39090891 39091144 -158104288 - L1MD1 LINE L1 -5240 1300 1043 1 883 1375 210 114 34 chr1 39091184 39091287 -158104145 + MTD LTR MaLR 4 125 -294 1 883 2615 129 21 35 chr1 39091287 39091714 -158103718 - MTC LTR MaLR 0 421 1 1 883 1375 210 114 34 chr1 39091714 39091995 -158103437 + MTD LTR MaLR 126 419 0 1 883 285 355 87 0 chr1 39091998 39092181 -158103251 - L1MD1 LINE L1 -5538 1002 804 1 883 642 250 0 0 chr1 39093319 39093459 -158101973 - B1F SINE Alu -9 140 1 1 883 1229 61 0 0 chr1 39093732 39093879 -158101553 + B1_Mus1 SINE Alu 2 148 0 1 883 270 325 17 51 chr1 39093971 39094149 -158101283 + Lx8 LINE L1 7300 7471 -2 1 883 788 299 45 24 chr1 39094213 39094546 -158100886 + L1M3 LINE L1 4850 5189 -951 1 883 1118 248 31 74 chr1 39094547 39094798 -158100634 - Lx8 LINE L1 -982 6491 6257 1 883 3073 42 58 23 chr1 39094798 39095191 -158100241 + MTB_Mm LTR MaLR 1 407 0 1 883 1118 248 31 74 chr1 39095191 39095265 -158100167 - Lx8 LINE L1 -1217 6256 6180 1 883 275 0 0 28 chr1 39095277 39095313 -158100119 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 883 1399 297 63 33 chr1 39095337 39095942 -158099490 - Lx8 LINE L1 -65 5815 5193 1 883 921 210 0 28 chr1 39097410 39097591 -158097841 - RLTR14 LTR ERV1 -34 348 173 1 883 335 348 29 58 chr1 39097678 39097849 -158097583 + MLT1A LTR MaLR 3 168 -206 1 883 446 303 104 22 chr1 39099190 39099372 -158096060 - MLT1B LTR MaLR -2 388 192 1 883 486 136 51 0 chr1 39099500 39099618 -158095814 + CT-rich Low_complexity Low_complexity 2 125 0 1 883 3391 92 15 4 chr1 39099803 39100273 -158095159 - MT2C_Mm LTR ERVL 0 475 1 1 883 204 97 0 0 chr1 39100635 39100666 -158094766 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 883 313 292 50 114 chr1 39100671 39100734 -158094698 - ORR1E LTR MaLR -154 205 151 1 883 6102 32 6 0 chr1 39100734 39101447 -158093985 - L1Md_F3 LINE L1 -2 6582 5866 1 883 313 292 50 114 chr1 39101447 39101584 -158093848 - ORR1E LTR MaLR -209 150 18 1 883 320 0 0 24 chr1 39101604 39101645 -158093787 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 883 295 238 94 68 chr1 39102367 39102606 -158092826 - MLT1B LTR MaLR -5 385 5 1 883 2403 69 82 55 chr1 39104563 39104929 -158090503 + L1_Mus2 LINE L1 6191 6566 0 1 883 413 340 124 14 chr1 39105000 39105218 -158090214 + MLT1K LTR MaLR 351 592 -3 1 883 1035 223 14 14 chr1 39105541 39105750 -158089682 + B3 SINE B2 2 210 -6 1 883 275 293 84 0 chr1 39105765 39105915 -158089517 - L1MD2 LINE L1 -22 6337 6141 1 883 767 273 139 7 chr1 39106051 39106463 -158088969 - L1MD2 LINE L1 -2082 5960 5482 1 883 1050 229 67 26 chr1 39106464 39106733 -158088699 + RLTR18 LTR ERVK 2 281 -335 1 883 284 237 24 73 chr1 39106748 39106830 -158088602 + RLTR18B LTR ERVK 189 266 -350 1 883 1153 244 43 97 chr1 39106828 39107278 -158088154 - RMER19C LTR ERVK -341 396 1 1 883 659 269 40 12 chr1 39107278 39107432 -158088000 + RLTR18B LTR ERVK 353 511 -1 1 883 710 245 0 0 chr1 39107524 39107667 -158087765 - B1_Mur1 SINE Alu -5 144 2 1 883 589 259 172 11 chr1 39107668 39108055 -158087377 - L1MD2 LINE L1 -918 5441 4950 1 883 444 37 0 0 chr1 39108055 39108109 -158087323 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1 883 586 254 264 22 chr1 39108109 39108538 -158086894 - L1MD2 LINE L1 -1197 4949 4401 1 883 3321 80 54 17 chr1 39108839 39109320 -158086112 + Lx3_Mus LINE L1 5864 6362 -647 1 883 243 214 0 18 chr1 39109320 39109377 -158086055 - MLT1A1 LTR MaLR -31 377 322 1 883 1530 239 44 11 chr1 39110486 39110849 -158084583 + Lx8 LINE L1 6572 6946 -527 1 883 282 265 12 6 chr1 39110873 39111040 -158084392 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 883 420 238 0 0 chr1 39111063 39111189 -158084243 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 883 732 280 273 32 chr1 39111189 39111599 -158083833 + Lx8 LINE L1 6964 7471 -2 1 883 352 331 96 24 chr1 39111676 39111967 -158083465 + L1M2 LINE L1 2252 2563 -4286 1 883 690 13 0 0 chr1 39112009 39112088 -158083344 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 883 1810 130 73 45 chr1 39112090 39112434 -158082998 - ORR1C1 LTR MaLR -14 364 10 1 883 297 0 0 0 chr1 39112434 39112467 -158082965 + (CCA)n Simple_repeat Simple_repeat 2 34 0 1 883 224 221 0 38 chr1 39112609 39112689 -158082743 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 1 883 288 301 8 42 chr1 39112691 39112809 -158082623 + L1M2 LINE L1 3089 3202 -3640 1 883 273 147 44 35 chr1 39112831 39112944 -158082488 + (TA)n Simple_repeat Simple_repeat 1 114 0 1 883 383 325 120 21 chr1 39112986 39113269 -158082163 + L1M2 LINE L1 3227 3537 -3308 1 883 248 339 38 38 chr1 39113767 39113899 -158081533 - MLT2B3 LTR ERVL -168 386 255 1 883 309 258 0 0 chr1 39114111 39114177 -158081255 - ID4_ SINE ID -16 67 2 1 883 296 259 134 36 chr1 39114185 39114297 -158081135 - ID_B1 SINE B4 -3 221 99 1 883 10325 21 0 0 chr1 39114813 39116668 -158078764 - L1Md_T LINE L1 0 6582 4728 1 883 8257 21 0 0 chr1 39116664 39117619 -158077813 + L1Md_T LINE L1 3765 4719 -1164 1 883 549 280 44 28 chr1 39117626 39117806 -158077626 + MIRb SINE MIR 36 218 -50 1 883 248 356 79 17 chr1 39118253 39118430 -158077002 + ORR1E LTR MaLR 68 255 -104 2 883 2157 152 15 46 chr1 39118485 39118877 -158076555 - RMER19B LTR ERVK -301 601 222 2 883 310 325 0 12 chr1 39119083 39119167 -158076265 - ORR1E LTR MaLR -268 91 9 2 883 274 360 32 70 chr1 39119169 39119327 -158076105 - MER115 DNA Tip100 -138 555 404 2 883 271 335 153 15 chr1 39119904 39120107 -158075325 - MER58B DNA MER1_type -65 276 46 2 883 194 296 33 120 chr1 39121667 39121759 -158073673 - MER5B DNA MER1_type -65 113 30 2 883 189 310 13 78 chr1 39121974 39122051 -158073381 - L2c LINE L2 -27 3360 3289 2 883 293 295 0 0 chr1 39122683 39122761 -158072671 - MIR SINE MIR -10 252 175 2 883 821 238 188 38 chr1 39123602 39123890 -158071542 - MLT1A0 LTR MaLR -7 358 28 2 883 265 367 87 20 chr1 39123909 39124059 -158071373 + MLT1K LTR MaLR 231 390 -205 2 883 273 261 0 0 chr1 39124163 39124251 -158071181 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 883 533 331 85 22 chr1 39124304 39124576 -158070856 - B4A SINE B4 -2 290 2 2 883 265 290 14 0 chr1 39124659 39124728 -158070704 + MIRb SINE MIR 122 191 -77 2 883 360 200 9 19 chr1 39125743 39125850 -158069582 + GA-rich Low_complexity Low_complexity 4 109 0 2 883 8022 102 5 8 chr1 39127367 39129192 -158066240 + L1_Mus4 LINE L1 4798 6617 -19 2 883 198 0 0 0 chr1 39129192 39129214 -158066218 + (TAA)n Simple_repeat Simple_repeat 3 24 0 2 883 2462 81 0 127 chr1 39129338 39129749 -158065683 - RLTR10D LTR ERVK 0 359 1 2 883 344 354 93 17 chr1 39130087 39130323 -158065109 + L1ME2 LINE L1 760 1013 -5402 2 883 383 352 74 31 chr1 39130369 39130627 -158064805 + L1ME2 LINE L1 1307 1575 -4840 2 883 1266 41 0 0 chr1 39130631 39130778 -158064654 + B1_Mm SINE Alu 1 147 0 2 883 587 135 0 10 chr1 39130874 39130971 -158064461 - Lx4B LINE L1 -568 6490 6395 2 883 3004 164 87 13 chr1 39130966 39131515 -158063917 + Lx5 LINE L1 6461 7050 0 2 883 368 288 208 11 chr1 39131535 39131819 -158063613 + L1ME2 LINE L1 1776 2115 -4285 2 883 189 0 0 0 chr1 39131826 39131847 -158063585 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 883 278 343 19 39 chr1 39131865 39131968 -158063464 - RSINE1 SINE B4 -61 104 4 2 883 644 286 127 4 chr1 39132007 39132381 -158063051 + L1ME2 LINE L1 2169 2589 -3730 2 883 188 273 0 13 chr1 39132556 39132634 -158062798 + GA-rich Low_complexity Low_complexity 4 80 0 2 883 373 266 137 50 chr1 39132694 39132876 -158062556 + L1ME2 LINE L1 2899 3096 -3223 2 883 323 328 17 17 chr1 39132884 39133002 -158062430 + B4A SINE B4 1 118 -174 2 883 389 341 21 21 chr1 39133046 39133187 -158062245 + B4A SINE B4 68 208 -84 2 883 541 287 0 71 chr1 39133204 39133358 -158062074 + RSINE1 SINE B4 3 145 -20 2 883 203 61 0 29 chr1 39133366 39133400 -158062032 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 883 315 71 0 0 chr1 39133400 39133442 -158061990 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2 883 525 356 119 5 chr1 39133649 39134036 -158061396 + L1ME2 LINE L1 3255 3685 -2634 2 883 643 286 101 47 chr1 39134058 39134443 -158060989 + L1ME2 LINE L1 5713 6118 -219 2 883 553 236 53 8 chr1 39134482 39134635 -158060797 - MLT1A0 LTR MaLR -16 374 213 2 883 1212 260 103 45 chr1 39134642 39135021 -158060411 - MTD LTR MaLR -15 404 4 2 883 482 342 85 11 chr1 39135021 39135204 -158060228 - MLT1A0 LTR MaLR -165 200 4 2 883 474 18 0 0 chr1 39135829 39135884 -158059548 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 883 229 265 47 47 chr1 39135884 39135991 -158059441 + RMER15 LTR ERVL 281 387 -188 2 883 423 0 0 0 chr1 39136046 39136093 -158059339 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 883 504 0 0 0 chr1 39136093 39136148 -158059284 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 883 180 278 103 72 chr1 39136361 39136458 -158058974 + MIRb SINE MIR 101 200 -68 2 883 586 172 32 0 chr1 39136637 39136794 -158058638 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 2 883 245 382 20 0 chr1 39136794 39136896 -158058536 - PB1D10 SINE Alu -13 104 1 2 883 642 136 0 0 chr1 39136897 39137015 -158058417 + (TG)n Simple_repeat Simple_repeat 1 118 0 2 883 538 324 95 57 chr1 39137221 39137591 -158057841 - MLT1C LTR MaLR -7 460 77 2 883 572 291 65 83 chr1 39137746 39137975 -158057457 + ORR1E LTR MaLR 45 269 -90 2 883 3866 25 5 0 chr1 39138030 39138464 -158056968 + RLTR10C LTR ERVK 1 436 0 2 883 2769 70 3 0 chr1 39138464 39138806 -158056626 + MMERVK10C-int LTR ERVK 1 343 -7238 2 883 783 189 5 16 chr1 39138804 39138997 -158056435 + MMERVK10C-int LTR ERVK 729 919 -6662 2 883 477 122 0 43 chr1 39139002 39139096 -158056336 + MMERVK10C-int LTR ERVK 863 952 -6629 2 883 781 176 279 29 chr1 39139188 39139428 -158056004 + MMERVK10C-int LTR ERVK 312 611 -4795 2 883 377 229 147 40 chr1 39139422 39139572 -158055860 + MMERVK10C-int LTR ERVK 523 688 -5449 2 883 322 158 0 0 chr1 39139559 39139616 -158055816 + MMERVK10C-int LTR ERVK 1089 1145 -4261 2 883 387 95 0 0 chr1 39139621 39139684 -158055748 + MMERVK10C-int LTR ERVK 1885 1947 -5634 2 883 6444 31 0 0 chr1 39139690 39140421 -158055011 + MMERVK10C-int LTR ERVK 2552 3282 -4299 2 883 1860 47 4 13 chr1 39140421 39140660 -158054772 + RLTR10C LTR ERVK 200 436 0 2 883 271 341 23 12 chr1 39141880 39141966 -158053466 - MTEa LTR MaLR -15 364 278 2 883 603 276 184 20 chr1 39142392 39142691 -158052741 + ORR1D1 LTR MaLR 1 348 -26 2 883 183 28 83 0 chr1 39143864 39143900 -158051532 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 883 224 250 194 0 chr1 39143900 39143972 -158051460 - B4A SINE B4 -206 86 1 2 883 4210 137 66 6 chr1 39144210 39144880 -158050552 + RMER19A LTR ERVK 1 710 -27 2 883 218 270 92 26 chr1 39145158 39145234 -158050198 - MIR SINE MIR -100 162 82 2 883 1271 119 90 0 chr1 39145268 39145469 -158049963 - URR1B DNA MER1_type 0 225 7 2 883 515 164 4 12 chr1 39145739 39145842 -158049590 + ORR1C1 LTR MaLR 291 394 0 2 883 396 0 0 0 chr1 39145872 39145916 -158049516 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 883 1430 244 63 42 chr1 39146479 39146889 -158048543 - MTD LTR MaLR 0 419 1 2 883 265 279 0 0 chr1 39147087 39147148 -158048284 + B3 SINE B2 24 84 -132 2 883 447 100 0 0 chr1 39147337 39147407 -158048025 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 883 754 248 20 0 chr1 39147412 39147561 -158047871 - B3A SINE B2 -45 153 2 2 883 259 296 16 23 chr1 39147561 39147689 -158047743 + L1M4 LINE L1 1164 1290 -5252 2 883 662 160 106 62 chr1 39147784 39147944 -158047488 + ORR1C1 LTR MaLR 1 167 -211 2 883 435 360 63 36 chr1 39147922 39148225 -158047207 - MT2A LTR ERVL -146 387 77 2 883 353 294 100 8 chr1 39148167 39148287 -158047145 - MTE2a LTR MaLR -244 135 5 2 883 620 213 8 38 chr1 39148302 39148434 -158046998 + RSINE1 SINE B4 10 137 -28 2 883 402 21 0 0 chr1 39148443 39148490 -158046942 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 883 559 260 97 81 chr1 39149374 39149621 -158045811 - MTE2a LTR MaLR 0 379 129 2 883 344 242 0 11 chr1 39149719 39149899 -158045533 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 883 492 18 0 0 chr1 39150601 39150658 -158044774 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 883 281 312 68 62 chr1 39151071 39151286 -158044146 + MLT1B LTR MaLR 132 347 -61 2 883 1021 56 0 0 chr1 39151281 39151407 -158044025 + B1_Mus1 SINE Alu 23 148 0 2 883 1318 256 63 9 chr1 39152927 39153258 -158042174 + MTE2a LTR MaLR 30 378 -1 2 883 585 254 56 0 chr1 39155629 39155771 -158039661 + Lx7 LINE L1 7176 7325 -371 2 883 369 0 0 0 chr1 39156466 39156507 -158038925 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 883 414 0 0 0 chr1 39156507 39156552 -158038880 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 883 1131 243 13 72 chr1 39156739 39157045 -158038387 + B4 SINE B4 5 292 0 2 883 270 81 0 0 chr1 39157045 39157082 -158038350 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 883 241 276 75 33 chr1 39157364 39157484 -158037948 + L1ME1 LINE L1 5877 6001 -178 2 883 541 136 0 0 chr1 39157488 39157576 -158037856 + ORR1A2 LTR MaLR 1 88 -239 2 883 2080 92 8 11 chr1 39157574 39157906 -158037526 + ORR1A2 LTR MaLR 7 338 -8 2 883 770 219 27 21 chr1 39158303 39158490 -158036942 - B3A SINE B2 -10 188 1 2 883 530 311 65 106 chr1 39159842 39160350 -158035082 - L1M7 LINE L1 -4397 1821 1335 2 883 381 22 0 0 chr1 39161550 39161596 -158033836 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 883 242 241 216 11 chr1 39161899 39161987 -158033445 + MER57C2 LTR ERV1 329 434 0 2 883 203 311 0 0 chr1 39163520 39163581 -158031851 + MIRm SINE MIR 199 259 -17 2 883 2855 133 4 42 chr1 39164593 39165072 -158030360 + RMER6B LTR ERVK 1 461 0 2 883 405 0 0 0 chr1 39165380 39165425 -158030007 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 883 2511 69 22 0 chr1 39165810 39166130 -158029302 - ORR1A2 LTR MaLR 0 327 1 2 883 222 62 0 0 chr1 39166503 39166535 -158028897 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2 883 198 167 0 0 chr1 39166551 39166587 -158028845 + (TGG)n Simple_repeat Simple_repeat 3 38 0 2 883 234 196 0 0 chr1 39166587 39166633 -158028799 + (CATG)n Simple_repeat Simple_repeat 1 46 0 2 883 444 104 0 0 chr1 39166634 39166701 -158028731 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 883 192 152 0 0 chr1 39167978 39168011 -158027421 + (CATA)n Simple_repeat Simple_repeat 3 35 0 2 883 1067 92 26 19 chr1 39168020 39168284 -158027148 + (TCTA)n Simple_repeat Simple_repeat 1 265 0 2 883 298 258 0 16 chr1 39169196 39169259 -158026173 - B1F2 SINE Alu -49 100 39 2 883 913 249 181 37 chr1 39169266 39169437 -158025995 + MTD LTR MaLR 1 193 -226 2 883 2453 101 3 0 chr1 39169437 39169763 -158025669 + ORR1A2 LTR MaLR 1 327 0 2 883 913 249 181 37 chr1 39169763 39169945 -158025487 + MTD LTR MaLR 194 405 -14 2 883 221 192 54 71 chr1 39169960 39170016 -158025416 - B4 SINE B4 -169 123 69 2 883 850 326 31 22 chr1 39170407 39170855 -158024577 + L1MD LINE L1 3347 3798 -2348 2 883 239 304 19 124 chr1 39170877 39170951 -158024481 - RMER30 DNA MER1_type -107 95 33 2 883 3588 67 28 2 chr1 39170951 39171414 -158024018 + MT2C_Mm LTR ERVL 1 475 0 2 883 239 304 19 124 chr1 39171414 39171444 -158023988 - RMER30 DNA MER1_type -170 32 2 2 883 2796 162 51 2 chr1 39171776 39172284 -158023148 - MT2A LTR ERVL 0 533 1 2 883 700 235 53 6 chr1 39173056 39173227 -158022205 - RLTR14 LTR ERV1 -193 189 11 2 883 697 286 5 38 chr1 39174063 39174225 -158021207 + B3 SINE B2 5 166 -50 3 883 522 46 0 0 chr1 39174225 39174290 -158021142 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 883 363 44 0 0 chr1 39174290 39174334 -158021098 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 883 2703 137 27 7 chr1 39174339 39174752 -158020680 - MTC LTR MaLR 0 421 1 3 883 697 286 5 38 chr1 39174752 39174767 -158020665 + B3 SINE B2 169 181 -35 3 883 235 254 0 27 chr1 39174938 39175011 -158020421 + L1MDa LINE L1 2484 2554 -4079 3 883 227 262 83 0 chr1 39175372 39175456 -158019976 + L1MDa LINE L1 2742 2832 -3705 3 883 549 317 36 39 chr1 39176117 39176449 -158018983 + L1MB1 LINE L1 3392 3722 -2424 3 883 2637 178 81 10 chr1 39176450 39176552 -158018880 - RMER19B LTR ERVK 0 902 802 3 883 435 38 0 0 chr1 39176552 39176605 -158018827 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 883 2637 178 81 10 chr1 39176605 39177018 -158018414 - RMER19B LTR ERVK -101 801 350 3 883 252 274 31 24 chr1 39177024 39177151 -158018281 + L1MB1 LINE L1 5767 5894 -289 3 883 324 253 210 6 chr1 39177182 39177349 -158018083 + L1MB1 LINE L1 5963 6163 -5 3 883 273 119 0 0 chr1 39177355 39177397 -158018035 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 883 587 271 110 17 chr1 39177419 39177592 -158017840 - B4A SINE B4 -95 197 9 3 883 736 253 54 11 chr1 39177632 39177816 -158017616 - B3 SINE B2 0 216 25 3 883 387 291 34 0 chr1 39177870 39177987 -158017445 - B3 SINE B2 -1 215 95 3 883 3283 137 63 4 chr1 39178398 39178960 -158016472 + Lx4B LINE L1 5170 5771 -1287 3 883 268 363 50 59 chr1 39179099 39179301 -158016131 + MLT1J LTR MaLR 276 475 -37 3 883 710 226 66 134 chr1 39179795 39180184 -158015248 - RMER16 LTR ERVK 0 533 5 3 883 384 298 73 56 chr1 39180814 39180992 -158014440 - MLT1J LTR MaLR -331 181 1 3 883 1352 153 160 4 chr1 39181351 39181586 -158013846 - MTC LTR MaLR 0 421 148 3 883 1146 269 21 82 chr1 39181586 39181962 -158013470 - ORR1E LTR MaLR -2 357 5 3 883 234 325 114 0 chr1 39182112 39182235 -158013197 + L1MDb LINE L1 490 626 -5783 3 883 1070 255 62 71 chr1 39182260 39182585 -158012847 + MTE2b LTR MaLR 1 322 -57 3 883 938 272 126 8 chr1 39182643 39183032 -158012400 + L1MDb LINE L1 716 1150 -5259 3 883 249 108 0 0 chr1 39183654 39183691 -158011741 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 883 798 200 6 43 chr1 39183983 39184145 -158011287 + B3A SINE B2 2 157 -41 3 883 360 0 0 0 chr1 39184149 39184189 -158011243 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 883 370 265 20 10 chr1 39184403 39184502 -158010930 + MLT1A1 LTR MaLR 291 390 -18 3 883 203 274 77 64 chr1 39185081 39185159 -158010273 - MIR SINE MIR -66 196 118 3 883 339 267 0 0 chr1 39185568 39185809 -158009623 + CT-rich Low_complexity Low_complexity 1 241 0 3 883 3657 122 31 55 chr1 39185951 39187265 -158008167 + L1Md_F LINE L1 523 1770 -2144 3 883 3353 69 11 9 chr1 39187288 39187739 -158007693 - RLTR13C2 LTR ERVK -26 782 331 3 883 1425 51 0 22 chr1 39187738 39187918 -158007514 - RLTR13C2 LTR ERVK -632 176 1 3 883 5642 98 1 20 chr1 39187918 39188768 -158006664 + L1Md_F LINE L1 1780 2613 -3270 3 883 5074 59 1 12 chr1 39188768 39189415 -158006017 + L1_Mus2 LINE L1 5927 6566 0 3 883 767 244 38 114 chr1 39189458 39189694 -158005738 - MTE2a LTR MaLR -104 275 58 3 883 534 235 0 0 chr1 39189694 39189792 -158005640 - MTE2a LTR MaLR -281 98 1 3 883 247 344 0 0 chr1 39189794 39189855 -158005577 - MLT1A1 LTR MaLR -271 137 77 3 883 391 231 6 51 chr1 39189873 39190051 -158005381 + (CAAT)n Simple_repeat Simple_repeat 3 172 0 3 883 254 246 16 0 chr1 39190089 39190150 -158005282 - MLT1A1 LTR MaLR -326 82 21 3 110 1186 259 69 12 chr1 39190380 39190712 -158004720 - ORR1E LTR MaLR -8 351 1 3 884 1316 220 47 13 chr1 39190973 39191273 -158004159 - Lx5 LINE L1 0 7050 6741 3 884 853 224 27 16 chr1 39191289 39191475 -158003957 - Lx5 LINE L1 -369 6681 6494 3 884 2500 118 62 10 chr1 39191565 39191934 -158003498 - MT2B LTR ERVL 0 601 211 3 884 549 0 0 0 chr1 39191934 39191995 -158003437 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 884 1230 34 0 20 chr1 39191996 39192146 -158003286 - B1_Mus2 SINE Alu 0 147 1 3 884 2500 118 62 10 chr1 39192146 39192159 -158003273 - MT2B LTR ERVL -391 210 197 3 884 4404 170 49 35 chr1 39192165 39193057 -158002375 - RMER13B LTR ERVK -3 905 1 3 884 1213 113 68 54 chr1 39193057 39193257 -158002175 - MT2B LTR ERVL -398 203 1 3 884 367 240 127 40 chr1 39193257 39193291 -158002141 - ORR1E-int LTR MaLR -1350 613 569 3 884 283 205 36 71 chr1 39193719 39193803 -158001629 + ID4 SINE ID 1 81 -2 3 884 561 300 65 0 chr1 39193817 39194017 -158001415 + ID_B1 SINE B4 1 213 -11 3 884 225 0 0 0 chr1 39194017 39194042 -158001390 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 3 884 1045 269 206 44 chr1 39194472 39194843 -158000589 - RMER4B LTR ERVK -3 582 143 3 884 207 0 0 0 chr1 39194843 39194866 -158000566 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 884 1045 266 110 13 chr1 39194866 39194988 -158000444 - RMER4B LTR ERVK -443 142 19 3 884 2106 84 10 161 chr1 39195315 39195699 -157999733 + ORR1A3 LTR MaLR 1 326 0 3 884 396 59 0 0 chr1 39195974 39196025 -157999407 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 884 376 298 35 35 chr1 39196034 39196208 -157999224 - RMER15 LTR ERVL -65 510 337 3 884 305 349 96 0 chr1 39196637 39196783 -157998649 - MER5A1 DNA MER1_type -5 161 2 3 884 525 104 0 0 chr1 39197753 39197830 -157997602 + (TTCTCC)n Simple_repeat Simple_repeat 3 79 0 3 884 4145 119 8 88 chr1 39197832 39198613 -157996819 + MTB-int LTR MaLR 381 1098 0 3 884 3303 50 0 7 chr1 39198613 39199016 -157996416 + MTB LTR MaLR 1 400 0 3 884 2029 147 67 11 chr1 39199202 39199560 -157995872 - ORR1C1 LTR MaLR 0 378 1 3 884 277 278 44 53 chr1 39200816 39200930 -157994502 + MIR SINE MIR 113 225 -37 3 884 1569 179 26 142 chr1 39200930 39201352 -157994080 + ORR1D1 LTR MaLR 1 373 -1 3 884 828 326 55 24 chr1 39201375 39201667 -157993765 + Tigger7 DNA MER2_type 8 308 -2183 3 884 440 289 45 30 chr1 39201773 39202028 -157993404 + L1_Rod LINE L1 5078 5370 -773 3 884 515 246 31 58 chr1 39202151 39202411 -157993021 - Lx7 LINE L1 -1670 5974 5721 3 884 580 173 0 24 chr1 39202648 39202904 -157992528 + (CA)n Simple_repeat Simple_repeat 1 249 0 3 884 725 157 0 21 chr1 39202919 39203168 -157992264 + (CA)n Simple_repeat Simple_repeat 1 243 0 3 884 245 250 0 100 chr1 39203173 39203253 -157992179 + 4.5SRNA scRNA scRNA 15 86 -8 3 884 735 109 0 0 chr1 39203201 39203299 -157992133 + B1_Mus1 SINE Alu 39 136 -12 3 884 1133 35 7 0 chr1 39203299 39203441 -157991991 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 3 884 735 109 0 0 chr1 39203441 39203452 -157991980 + B1_Mus1 SINE Alu 137 147 -1 3 884 553 13 53 0 chr1 39203452 39203528 -157991904 + (GGAAA)n Simple_repeat Simple_repeat 1 80 0 3 884 1012 26 0 0 chr1 39203621 39203737 -157991695 + L1Md_A LINE L1 5888 6003 -579 3 884 251 362 0 0 chr1 39203865 39203934 -157991498 + C-rich Low_complexity Low_complexity 46 114 0 3 884 686 230 164 27 chr1 39204090 39204252 -157991180 + MLT2B2 LTR ERVL 2 190 -325 3 884 2581 132 50 2 chr1 39204252 39204653 -157990779 - MTC LTR MaLR 0 421 2 3 884 686 230 164 27 chr1 39204653 39204709 -157990723 + MLT2B2 LTR ERVL 191 250 -265 3 884 418 364 11 5 chr1 39204742 39204927 -157990505 + MTC LTR MaLR 45 230 -191 3 884 312 252 45 0 chr1 39205036 39205147 -157990285 - L1M2 LINE L1 -2709 3434 3319 3 884 418 307 8 30 chr1 39205205 39205577 -157989855 + (TATG)n Simple_repeat Simple_repeat 1 363 0 3 884 288 328 11 33 chr1 39205502 39205682 -157989750 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 3 884 653 275 179 20 chr1 39205684 39205936 -157989496 - B4 SINE B4 0 292 1 3 884 627 201 0 0 chr1 39206090 39206229 -157989203 + (CA)n Simple_repeat Simple_repeat 1 139 0 3 884 631 243 109 119 chr1 39206231 39206349 -157989083 + B4A SINE B4 94 229 -63 3 884 1094 185 19 23 chr1 39206349 39206565 -157988867 + B3 SINE B2 2 216 0 3 884 631 243 109 119 chr1 39206565 39206647 -157988785 + B4A SINE B4 230 292 0 3 884 215 215 0 15 chr1 39206656 39206722 -157988710 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 884 222 171 54 47 chr1 39206744 39206873 -157988559 + (TATAA)n Simple_repeat Simple_repeat 3 132 0 3 884 232 165 11 56 chr1 39206773 39206863 -157988569 + (TAAA)n Simple_repeat Simple_repeat 1 86 0 3 884 2043 98 11 100 chr1 39206970 39207320 -157988112 - ORR1A2 LTR MaLR -8 319 1 3 884 276 303 26 0 chr1 39207382 39207458 -157987974 - B1F2 SINE Alu -15 134 57 3 884 189 0 0 0 chr1 39207528 39207549 -157987883 + (GTTTG)n Simple_repeat Simple_repeat 5 25 0 3 884 1233 41 7 0 chr1 39207559 39207704 -157987728 - B1_Mus2 SINE Alu -1 146 1 3 884 593 195 7 26 chr1 39208068 39208221 -157987211 - Lx9 LINE L1 -7 7637 7488 3 884 767 280 62 0 chr1 39208566 39208759 -157986673 - ID_B1 SINE B4 -19 205 1 3 884 1108 156 155 32 chr1 39208781 39209059 -157986373 - Lx9 LINE L1 -7 7637 7326 3 884 1313 214 102 35 chr1 39210195 39210450 -157984982 - ORR1D2 LTR MaLR 0 370 87 3 884 315 0 0 0 chr1 39210450 39210485 -157984947 + (TTA)n Simple_repeat Simple_repeat 1 35 0 3 884 414 79 16 0 chr1 39210489 39210552 -157984880 - L1_Mus1 LINE L1 -16 6551 6488 3 884 1313 214 102 35 chr1 39210552 39210634 -157984798 - ORR1D2 LTR MaLR -284 86 5 3 884 222 331 20 20 chr1 39210640 39210741 -157984691 - MIRb SINE MIR -63 145 53 3 884 4861 62 5 3 chr1 39210887 39211500 -157983932 + L1_Mus2 LINE L1 5952 6565 -1 3 884 423 0 0 0 chr1 39211503 39211550 -157983882 + (TAA)n Simple_repeat Simple_repeat 3 49 0 3 884 229 311 11 43 chr1 39211971 39212065 -157983367 + MLT1A1 LTR MaLR 313 403 -5 3 884 668 284 206 9 chr1 39212687 39212741 -157982691 - MTEb LTR MaLR 0 379 323 3 884 291 71 0 0 chr1 39212741 39212783 -157982649 + (CAGG)n Simple_repeat Simple_repeat 3 44 0 3 884 668 284 206 9 chr1 39212783 39213044 -157982388 - MTEb LTR MaLR -57 322 3 3 884 1391 222 110 45 chr1 39213070 39213470 -157981962 + RLTR20B1 LTR ERVK 49 474 -89 3 884 228 122 0 0 chr1 39213472 39213513 -157981919 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 884 378 0 0 0 chr1 39213521 39213563 -157981869 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 884 353 148 45 90 chr1 39213563 39213652 -157981780 + RLTR20B1 LTR ERVK 452 536 -5 3 884 208 187 61 68 chr1 39213660 39213765 -157981667 - MIR SINE MIR -58 150 50 3 884 647 321 103 42 chr1 39213806 39214215 -157981217 + MER68 LTR ERVL 124 557 -6 3 884 257 218 71 0 chr1 39214471 39214541 -157980891 - MLT1A1 LTR MaLR -67 341 217 3 884 643 327 52 20 chr1 39214701 39214948 -157980484 - B4A SINE B4 -8 284 32 3 884 327 215 100 12 chr1 39214956 39215036 -157980396 - MLT1A1 LTR MaLR -321 87 1 3 884 946 153 6 6 chr1 39215076 39215254 -157980178 + GA-rich Low_complexity Low_complexity 2 179 0 3 884 271 306 12 12 chr1 39216351 39216437 -157978995 + PB1D10 SINE Alu 5 90 -27 3 884 309 151 0 0 chr1 39216874 39216927 -157978505 + CT-rich Low_complexity Low_complexity 4 56 0 4 884 781 265 11 16 chr1 39218228 39218412 -157977020 + B3A SINE B2 1 183 -15 4 884 860 189 23 12 chr1 39218418 39218589 -157976843 - MTD LTR MaLR -7 412 240 4 884 30 27 0 0 chr1 39218607 39218644 -157976788 + AT_rich Low_complexity Low_complexity 1 37 0 4 884 529 259 184 6 chr1 39218782 39218945 -157976487 - MTD LTR MaLR 0 419 228 4 884 1390 284 99 15 chr1 39218954 39219154 -157976278 + L1MB3 LINE L1 5546 5769 -414 4 884 436 246 57 21 chr1 39219154 39219295 -157976137 + B1F SINE Alu 1 146 -3 4 884 1390 284 99 15 chr1 39219295 39219680 -157975752 + L1MB3 LINE L1 5770 6180 -3 4 884 254 250 3 88 chr1 39220341 39220446 -157974986 - PB1D10 SINE Alu -10 110 12 4 884 939 303 25 18 chr1 39220496 39220778 -157974654 + B4A SINE B4 7 290 -2 4 884 186 192 0 0 chr1 39221077 39221129 -157974303 + (TCTCTG)n Simple_repeat Simple_repeat 1 52 0 4 884 837 317 57 35 chr1 39222848 39223214 -157972218 - MLT1B LTR MaLR -7 383 10 4 884 286 301 26 97 chr1 39223371 39223485 -157971947 - ID4_ SINE ID -41 111 6 4 884 498 273 38 8 chr1 39223487 39223620 -157971812 - B1F SINE Alu -1 148 12 4 884 268 289 122 0 chr1 39224537 39224627 -157970805 - MER3 DNA MER1_type -5 204 104 4 884 3030 158 104 2 chr1 39224691 39225222 -157970210 - RMER4B LTR ERVK 0 585 1 4 884 213 282 93 39 chr1 39225804 39225824 -157969608 - B4A SINE B4 -156 136 1 4 884 549 222 0 9 chr1 39225824 39225933 -157969499 - B3A SINE B2 -90 108 1 4 884 243 91 0 0 chr1 39225933 39225966 -157969466 - L1MB3 LINE L1 -42 6141 6109 4 884 399 41 0 0 chr1 39226021 39226070 -157969362 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 884 1078 78 0 0 chr1 39226568 39226709 -157968723 - B1_Mus1 SINE Alu 0 148 8 4 884 465 274 26 116 chr1 39226603 39226793 -157968639 - MT2B LTR ERVL -337 264 92 4 884 498 252 10 45 chr1 39227357 39227503 -157967929 + MLT1A0 LTR MaLR 256 365 0 4 884 481 338 159 7 chr1 39227503 39227802 -157967630 - MLT1A0 LTR MaLR -16 349 5 4 884 635 268 0 34 chr1 39228300 39228447 -157966985 + B3A SINE B2 10 151 -47 4 884 285 75 0 0 chr1 39228461 39228501 -157966931 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 884 301 285 90 68 chr1 39228579 39228638 -157966794 + L1MC LINE L1 3031 3086 -3060 4 884 787 190 56 7 chr1 39228638 39228781 -157966651 + B1_Mur4 SINE Alu 1 150 0 4 884 301 285 90 68 chr1 39228781 39228898 -157966534 + L1MC LINE L1 3087 3211 -2935 4 884 412 311 60 107 chr1 39229377 39229543 -157965889 + MLT1C LTR MaLR 3 153 -314 4 884 909 239 14 36 chr1 39229543 39229764 -157965668 - B3 SINE B2 0 216 1 4 884 412 311 60 107 chr1 39229764 39229914 -157965518 + MLT1C LTR MaLR 154 304 -163 4 884 795 88 0 34 chr1 39230167 39230178 -157965254 - B1_Mm SINE Alu 0 147 139 4 884 194 0 39 0 chr1 39230178 39230204 -157965228 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 884 795 88 0 34 chr1 39230204 39230310 -157965122 - B1_Mm SINE Alu -9 138 34 4 884 452 304 13 9 chr1 39230587 39230719 -157964713 + MLT1B LTR MaLR 230 386 -4 4 884 396 0 0 0 chr1 39231113 39231157 -157964275 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 884 270 0 0 0 chr1 39231157 39231186 -157964246 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 884 448 286 72 33 chr1 39231599 39231739 -157963693 + RSINE1 SINE B4 4 150 -15 4 884 297 0 0 0 chr1 39231739 39231772 -157963660 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 884 448 286 72 33 chr1 39231772 39231783 -157963649 + RSINE1 SINE B4 151 161 -4 4 884 342 229 0 0 chr1 39231911 39232007 -157963425 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 884 535 289 5 104 chr1 39232084 39232277 -157963155 - B3A SINE B2 -16 182 9 4 884 1370 178 97 20 chr1 39232427 39232769 -157962663 - ORR1C2 LTR MaLR 0 384 27 4 884 552 156 0 0 chr1 39232773 39232863 -157962569 - ORR1C2 LTR MaLR -252 122 33 4 884 592 292 62 81 chr1 39233394 39233778 -157961654 + MTEa LTR MaLR 1 377 -2 4 884 369 282 126 24 chr1 39234481 39234648 -157960784 - MLT1A LTR MaLR -2 372 189 4 884 323 247 206 0 chr1 39234815 39234912 -157960520 - PB1D10 SINE Alu 0 117 1 4 884 25 51 0 0 chr1 39234926 39234965 -157960467 + AT_rich Low_complexity Low_complexity 1 39 0 4 884 324 0 0 0 chr1 39235598 39235634 -157959798 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 884 213 287 11 54 chr1 39235727 39235819 -157959613 - B1F SINE Alu -61 88 1 4 884 610 258 12 25 chr1 39235819 39235902 -157959530 - B4A SINE B4 -210 82 2 4 884 202 264 110 14 chr1 39237029 39237102 -157958330 + MIR SINE MIR 109 188 -74 4 884 198 0 0 0 chr1 39237394 39237416 -157958016 + (A)n Simple_repeat Simple_repeat 1 22 0 4 884 744 268 16 16 chr1 39237437 39237623 -157957809 + B3A SINE B2 12 197 -1 4 884 362 229 40 16 chr1 39239052 39239176 -157956256 - L1MB7 LINE L1 -1 6177 6051 4 884 725 321 106 22 chr1 39239239 39239700 -157955732 - L1MB7 LINE L1 -223 5961 5462 4 884 557 190 0 6 chr1 39239941 39240121 -157955311 + CT-rich Low_complexity Low_complexity 2 180 0 4 884 284 169 13 0 chr1 39240136 39240213 -157955219 + CT-rich Low_complexity Low_complexity 1 78 0 4 884 273 275 35 94 chr1 39240215 39240413 -157955019 + MTEa LTR MaLR 197 370 -9 4 884 739 283 19 0 chr1 39240418 39240630 -157954802 - L1MB7 LINE L1 -713 5471 5256 4 884 511 292 126 55 chr1 39240704 39240997 -157954435 + MER44A DNA MER2_type 16 329 -10 4 884 493 305 73 45 chr1 39241015 39241437 -157953995 - L1MB7 LINE L1 -914 5232 4799 4 884 244 333 0 60 chr1 39241642 39241725 -157953707 - ID4 SINE ID -3 80 3 4 884 421 230 62 0 chr1 39242029 39242142 -157953290 + PB1D9 SINE Alu 1 120 0 4 884 297 308 39 0 chr1 39242352 39242430 -157953002 - MER5A DNA MER1_type -105 84 4 4 884 413 275 6 0 chr1 39243094 39243272 -157952160 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 884 298 350 29 19 chr1 39244222 39244327 -157951105 + B4 SINE B4 39 144 -148 4 884 264 0 0 159 chr1 39244328 39244460 -157950972 + (CAGAG)n Simple_repeat Simple_repeat 5 115 0 4 884 751 102 0 27 chr1 39244463 39244574 -157950858 + B1_Mur1 SINE Alu 42 149 0 4 884 579 250 100 20 chr1 39244592 39244792 -157950640 + B3 SINE B2 1 216 0 4 884 195 42 0 0 chr1 39244995 39245019 -157950413 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 884 514 304 82 48 chr1 39245251 39245483 -157949949 + L1MC1 LINE L1 5785 6019 -314 4 884 287 0 53 0 chr1 39245483 39245521 -157949911 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 4 884 514 304 82 48 chr1 39245521 39245582 -157949850 + L1MC1 LINE L1 6020 6088 -245 4 884 660 290 5 58 chr1 39245682 39245854 -157949578 + B3A SINE B2 5 172 -26 4 884 201 39 0 0 chr1 39245854 39245880 -157949552 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 884 660 290 5 58 chr1 39245880 39245912 -157949520 + B3A SINE B2 173 198 0 4 884 3445 43 50 2 chr1 39246143 39246353 -157949079 + RLTR10C LTR ERVK 1 222 -214 4 884 483 18 0 0 chr1 39246353 39246409 -157949023 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 884 3445 43 50 2 chr1 39246409 39246614 -157948818 + RLTR10C LTR ERVK 223 434 -2 4 884 202 116 23 23 chr1 39248359 39248403 -157947029 + GA-rich Low_complexity Low_complexity 3 46 0 4 884 447 19 0 0 chr1 39248954 39249006 -157946426 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 884 663 94 71 7 chr1 39249007 39249147 -157946285 + GA-rich Low_complexity Low_complexity 1 149 0 4 884 180 0 0 0 chr1 39249349 39249369 -157946063 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 4 884 435 137 0 0 chr1 39250504 39250577 -157944855 + (GGA)n Simple_repeat Simple_repeat 2 74 0 4 884 28 99 0 0 chr1 39250757 39250848 -157944584 + GC_rich Low_complexity Low_complexity 1 91 0 4 884 297 0 0 0 chr1 39252909 39252942 -157942490 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 884 199 298 0 34 chr1 39253358 39253417 -157942015 + L2b LINE L2 3319 3375 0 4 884 968 193 0 52 chr1 39254278 39254469 -157940963 + RMER15 LTR ERVL 395 575 0 4 884 531 256 170 4 chr1 39254661 39254930 -157940502 - MTEa LTR MaLR -2 377 16 4 884 363 301 50 22 chr1 39255095 39255234 -157940198 + MLT1L LTR MaLR 158 300 -310 4 884 783 119 151 0 chr1 39255475 39255601 -157939831 - B1_Mus1 SINE Alu -1 147 3 4 884 328 206 115 94 chr1 39256301 39256407 -157939025 - PB1D9 SINE Alu -42 107 1 4 884 282 289 11 22 chr1 39257145 39257237 -157938195 - ORR1E LTR MaLR 0 359 269 4 884 1733 154 102 3 chr1 39257751 39258083 -157937349 - ORR1D1 LTR MaLR -9 365 1 4 884 364 249 18 8 chr1 39259093 39259206 -157936226 - B1F1 SINE Alu 0 149 2 4 884 1029 174 114 0 chr1 39260002 39260203 -157935229 - URR1A DNA MER1_type -2 224 1 4 884 207 0 0 0 chr1 39260603 39260626 -157934806 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 884 276 30 0 0 chr1 39260626 39260659 -157934773 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 884 1670 212 63 96 chr1 39260669 39261191 -157934241 + RLTR11A LTR ERVK 7 511 -17 4 884 663 263 29 0 chr1 39261307 39261444 -157933988 - RSINE1 SINE B4 -24 141 1 4 884 1479 227 102 19 chr1 39262945 39263318 -157932114 + MTD LTR MaLR 2 405 -14 4 884 434 286 43 12 chr1 39263344 39263507 -157931925 - L1MA6 LINE L1 -10 6290 6123 4 884 414 220 272 41 chr1 39263526 39263673 -157931759 + B3A SINE B2 3 183 -15 4 884 210 143 0 0 chr1 39264488 39264523 -157930909 + (A)n Simple_repeat Simple_repeat 1 35 0 4 884 2235 104 25 3 chr1 39264552 39264871 -157930561 + ORR1A3 LTR MaLR 1 326 0 4 884 785 234 6 44 chr1 39265094 39265277 -157930155 - B3A SINE B2 -18 180 5 4 884 276 315 14 14 chr1 39265831 39265905 -157929527 + ID4 SINE ID 10 83 0 4 884 537 186 11 11 chr1 39265936 39266115 -157929317 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 884 330 306 118 90 chr1 39266272 39266527 -157928905 - ORR1E LTR MaLR -11 348 87 4 884 185 274 91 40 chr1 39267842 39267941 -157927491 + L2c LINE L2 3194 3297 -90 4 884 270 355 47 6 chr1 39268266 39268436 -157926996 + MIR SINE MIR 30 206 -56 4 884 3198 264 64 19 chr1 39268750 39269772 -157925660 - Lx9 LINE L1 -255 7389 6322 5 884 932 230 5 24 chr1 39269932 39270137 -157925295 + ID_B1 SINE B4 5 205 -19 5 884 340 345 47 33 chr1 39270376 39270589 -157924843 - RMER15 LTR ERVL -23 552 337 5 884 740 335 56 69 chr1 39271089 39271464 -157923968 - MER89 LTR ERV1 -4 555 186 5 884 354 268 93 116 chr1 39272967 39273182 -157922250 - MLT1A1 LTR MaLR -194 214 5 5 884 273 29 0 0 chr1 39273856 39273890 -157921542 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 884 927 212 51 10 chr1 39274532 39274727 -157920705 - B3 SINE B2 0 216 14 5 884 380 289 0 11 chr1 39275201 39275292 -157920140 + ID_B1 SINE B4 81 170 -54 5 884 231 336 58 58 chr1 39275261 39275381 -157920051 - MTEa LTR MaLR -254 125 6 5 884 518 294 33 111 chr1 39277012 39277264 -157918168 + MER33 DNA MER1_type 35 272 -52 5 884 277 347 77 52 chr1 39277264 39277419 -157918013 - RSINE1 SINE B4 -2 163 5 5 884 406 292 30 119 chr1 39277419 39277479 -157917953 + Charlie5 DNA MER1_type 2563 2623 -1 5 884 204 182 29 29 chr1 39277857 39277925 -157917507 + (TCTG)n Simple_repeat Simple_repeat 1 68 0 5 884 367 209 18 0 chr1 39277925 39278035 -157917397 + CT-rich Low_complexity Low_complexity 3 114 0 5 884 386 224 9 0 chr1 39278171 39278287 -157917145 + (TCCA)n Simple_repeat Simple_repeat 4 120 0 5 884 1149 89 0 0 chr1 39279560 39279964 -157915468 + (CA)n Simple_repeat Simple_repeat 1 404 0 5 884 1495 138 4 13 chr1 39280305 39280532 -157914900 + URR1B DNA MER1_type 1 225 0 5 884 602 276 105 90 chr1 39280626 39280949 -157914483 + MTC LTR MaLR 5 331 -76 5 884 481 227 124 8 chr1 39280948 39281077 -157914355 + MTC LTR MaLR 276 419 0 5 884 2541 64 18 0 chr1 39281243 39281569 -157913863 + L1_Mus1 LINE L1 6233 6564 -3 5 884 1179 242 75 50 chr1 39281639 39282000 -157913432 + ORR1D2 LTR MaLR 1 370 0 5 884 452 292 89 93 chr1 39282000 39282257 -157913175 + B4 SINE B4 37 292 0 5 884 662 170 6 165 chr1 39282531 39282707 -157912725 - URR1A DNA MER1_type 0 226 79 5 884 595 187 11 39 chr1 39282770 39282948 -157912484 + (CATA)n Simple_repeat Simple_repeat 1 173 0 5 884 207 204 0 0 chr1 39282960 39283004 -157912428 + (CATA)n Simple_repeat Simple_repeat 1 44 0 5 884 277 330 11 11 chr1 39283025 39283114 -157912318 - MT2A LTR ERVL -158 375 287 5 884 563 225 201 0 chr1 39284245 39284414 -157911018 - URR1A DNA MER1_type -12 214 12 5 884 474 273 52 47 chr1 39284591 39284783 -157910649 + B3A SINE B2 2 194 -4 5 884 625 300 163 25 chr1 39285250 39285698 -157909734 - L1MC4 LINE L1 -450 7592 7088 5 884 240 35 0 0 chr1 39285698 39285727 -157909705 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 5 884 625 300 163 25 chr1 39285727 39285848 -157909584 - L1MC4 LINE L1 -955 7087 6945 5 884 709 199 212 17 chr1 39286744 39286923 -157908509 + B3 SINE B2 3 216 0 5 884 810 269 12 8 chr1 39286954 39287157 -157908275 + B3A SINE B2 3 212 -4 5 884 698 245 32 59 chr1 39287170 39287391 -157908041 + B3 SINE B2 2 216 0 5 884 466 288 34 20 chr1 39287835 39287984 -157907448 + MLT1A1 LTR MaLR 258 408 0 5 884 322 198 11 23 chr1 39289040 39289128 -157906304 + GA-rich Low_complexity Low_complexity 2 88 0 5 884 1388 161 4 18 chr1 39290137 39290364 -157905068 + URR1B DNA MER1_type 1 224 -1 5 884 850 221 107 5 chr1 39290925 39291121 -157904311 - B3 SINE B2 0 216 1 5 884 248 319 79 9 chr1 39291220 39291272 -157904160 + ID_B1 SINE B4 55 150 -74 5 884 273 122 20 20 chr1 39291272 39291322 -157904110 + MT2B2 LTR ERVL 192 241 -343 5 884 337 196 0 0 chr1 39291279 39291335 -157904097 + PB1D10 SINE Alu 41 96 -21 5 884 248 319 79 9 chr1 39291322 39291334 -157904098 + ID_B1 SINE B4 151 176 -48 5 884 186 209 0 0 chr1 39291363 39291406 -157904026 + GA-rich Low_complexity Low_complexity 1 43 0 5 884 311 228 148 29 chr1 39291454 39291619 -157903813 - Charlie1 DNA MER1_type -97 2684 2485 5 884 334 256 98 121 chr1 39291632 39291805 -157903627 - Charlie1 DNA MER1_type -2608 173 5 5 884 191 284 0 24 chr1 39294169 39294252 -157901180 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 5 884 182 220 0 17 chr1 39294304 39294364 -157901068 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 884 259 370 92 54 chr1 39295487 39295856 -157899576 + MLT1B LTR MaLR 1 383 -7 5 884 1023 198 22 36 chr1 39296338 39296563 -157898869 - URR1A DNA MER1_type -3 223 2 5 884 472 296 6 0 chr1 39297488 39297714 -157897718 + (CA)n Simple_repeat Simple_repeat 1 227 0 5 884 308 276 0 13 chr1 39297732 39297809 -157897623 + HAL1-3A_ME LINE L1 1975 2050 -808 5 884 709 328 122 41 chr1 39298198 39298491 -157896941 - L1MA9 LINE L1 -38 6274 5943 5 884 3018 79 13 0 chr1 39298491 39298885 -157896547 - MTB LTR MaLR -1 399 1 5 884 709 315 64 38 chr1 39298885 39299153 -157896279 - L1MA9 LINE L1 -370 5942 5677 5 884 288 207 27 0 chr1 39299156 39299267 -157896165 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 884 437 209 0 7 chr1 39299285 39299434 -157895998 + (TG)n Simple_repeat Simple_repeat 2 149 0 5 884 1864 161 67 11 chr1 39299706 39300064 -157895368 + ORR1C1 LTR MaLR 1 378 0 5 884 639 253 171 50 chr1 39300241 39300719 -157894713 + L1MB5 LINE L1 5608 6143 -31 5 884 387 0 0 0 chr1 39301225 39301268 -157894164 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 884 313 250 138 43 chr1 39301346 39301484 -157893948 - B4A SINE B4 -139 153 3 5 884 415 256 41 16 chr1 39302991 39303114 -157892318 - B3A SINE B2 -72 126 1 5 884 207 0 0 0 chr1 39303348 39303371 -157892061 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 884 383 260 6 0 chr1 39303871 39304048 -157891384 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 884 240 222 0 0 chr1 39304060 39304132 -157891300 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 884 236 280 7 0 chr1 39304150 39304300 -157891132 + (CA)n Simple_repeat Simple_repeat 2 152 0 5 884 368 253 6 0 chr1 39304322 39304488 -157890944 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 884 332 295 0 10 chr1 39304535 39304631 -157890801 + HAL1-3A_ME LINE L1 1973 2067 -791 5 884 793 300 106 16 chr1 39305965 39306334 -157889098 - L1MA4 LINE L1 -364 5936 5535 5 884 243 0 0 0 chr1 39306824 39306851 -157888581 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5 884 299 294 12 0 chr1 39307405 39307490 -157887942 + RCHARR1 DNA MER1_type 639 724 -250 5 884 2713 62 27 22 chr1 39308060 39308425 -157887007 - L1_Mus1 LINE L1 0 6567 6201 5 884 227 207 99 12 chr1 39309069 39309153 -157886279 - MIR SINE MIR -150 126 27 5 884 2231 113 3 58 chr1 39309702 39310048 -157885384 + ORR1A2 LTR MaLR 1 327 0 5 884 309 209 60 0 chr1 39310141 39310208 -157885224 - ID4 SINE ID -10 73 3 5 884 207 0 0 0 chr1 39310572 39310595 -157884837 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 884 441 0 0 0 chr1 39310635 39310684 -157884748 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 884 241 97 0 0 chr1 39311212 39311243 -157884189 - Lx3B LINE L1 -420 6553 6523 5 884 552 152 11 0 chr1 39311842 39311934 -157883498 + B4A SINE B4 124 216 -76 5 884 481 278 37 22 chr1 39311958 39312094 -157883338 + RSINE1 SINE B4 11 148 -17 5 884 441 84 0 0 chr1 39312700 39312771 -157882661 + (CTG)n Simple_repeat Simple_repeat 1 71 0 5 884 441 311 54 7 chr1 39314786 39314935 -157880497 + MER58A DNA MER1_type 37 192 -32 5 884 1866 255 5 14 chr1 39315644 39316077 -157879355 + Lx6 LINE L1 7006 7434 -26 5 884 226 304 95 45 chr1 39317068 39317268 -157878164 - MIRb SINE MIR -16 252 43 5 884 338 264 27 18 chr1 39317301 39317413 -157878019 - L1MA5 LINE L1 -336 5964 5852 5 884 396 315 136 45 chr1 39317420 39317706 -157877726 + L1M2 LINE L1 5365 5676 -615 5 884 619 264 8 0 chr1 39317726 39317851 -157877581 + RSINE1 SINE B4 16 141 -24 5 884 402 21 0 0 chr1 39317853 39317900 -157877532 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 884 227 128 0 0 chr1 39318129 39318168 -157877264 + L1MB3 LINE L1 6054 6092 -91 5 884 25 0 0 0 chr1 39319363 39319388 -157876044 + AT_rich Low_complexity Low_complexity 1 25 0 5 884 259 196 0 18 chr1 39319465 39319522 -157875910 - RMER30 DNA MER1_type -44 158 103 5 884 598 259 124 69 chr1 39319548 39319822 -157875610 - B4A SINE B4 0 292 4 5 884 225 372 23 0 chr1 39319966 39320052 -157875380 + Charlie1a DNA MER1_type 1368 1455 0 5 884 180 283 22 0 chr1 39320759 39320805 -157874627 - L2b LINE L2 0 3375 3329 5 110 4182 72 2 7 chr1 39321585 39322131 -157873301 - L1Md_F2 LINE L1 0 6582 6040 5 885 933 113 81 12 chr1 39322285 39322446 -157872986 + RMER4A LTR ERVK 1 172 -294 5 885 2026 123 19 15 chr1 39323165 39323525 -157871907 + ORR1A3 LTR MaLR 1 394 0 5 885 881 236 150 12 chr1 39325401 39325654 -157869778 - B4A SINE B4 -4 288 1 5 885 228 218 111 37 chr1 39325944 39325987 -157869445 - L1M2c LINE L1 -5312 1477 1429 5 885 348 24 0 0 chr1 39325987 39326028 -157869404 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 885 228 218 111 37 chr1 39326028 39326065 -157869367 - L1M2c LINE L1 -5361 1428 1391 5 885 258 259 0 17 chr1 39326229 39326288 -157869144 + GA-rich Low_complexity Low_complexity 6 63 0 5 885 302 226 56 67 chr1 39326288 39326378 -157869054 + L1MD2 LINE L1 2044 2132 -4110 5 885 474 253 69 46 chr1 39326552 39326726 -157868706 - B3A SINE B2 -16 182 5 5 885 411 21 0 0 chr1 39326734 39326782 -157868650 + (TAG)n Simple_repeat Simple_repeat 1 48 0 5 885 742 260 115 26 chr1 39326786 39326995 -157868437 - Lx8 LINE L1 -1 7472 7242 5 885 1939 167 149 5 chr1 39326995 39327363 -157868069 - MTC LTR MaLR 0 421 1 5 885 742 260 115 26 chr1 39327363 39327457 -157867975 - Lx8 LINE L1 -232 7241 7144 5 885 1860 271 101 38 chr1 39327457 39328086 -157867346 - Lx8 LINE L1 -436 7024 6376 5 885 232 264 54 11 chr1 39328124 39328216 -157867216 + L1MD2 LINE L1 2203 2298 -3848 5 885 315 0 0 0 chr1 39328227 39328262 -157867170 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 885 368 279 153 75 chr1 39328510 39328804 -157866628 + L1MD2 LINE L1 2638 2954 -3192 5 885 456 263 95 101 chr1 39328894 39329063 -157866369 + B3A SINE B2 1 168 -30 5 885 285 128 0 0 chr1 39329094 39329141 -157866291 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 885 787 267 99 46 chr1 39329146 39329409 -157866023 + B4A SINE B4 2 278 -14 5 885 560 257 28 7 chr1 39329502 39329643 -157865789 + B1_Mur1 SINE Alu 1 144 -5 5 885 279 0 0 0 chr1 39329722 39329753 -157865679 + (T)n Simple_repeat Simple_repeat 1 31 0 5 885 450 314 119 31 chr1 39329782 39330203 -157865229 + L1MD2 LINE L1 3269 3726 -2420 5 885 422 289 75 69 chr1 39330210 39330370 -157865062 + B4 SINE B4 65 225 -67 6 885 798 149 37 0 chr1 39330237 39330371 -157865061 + B1_Mus1 SINE Alu 10 148 0 6 885 423 274 29 0 chr1 39330390 39330492 -157864940 + PB1D10 SINE Alu 1 105 -12 6 885 459 59 71 0 chr1 39330536 39330621 -157864811 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 6 885 246 32 0 0 chr1 39330621 39330652 -157864780 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 885 299 291 72 28 chr1 39330659 39330839 -157864593 + L1MD2 LINE L1 3790 3977 -2169 5 885 355 68 0 33 chr1 39330967 39331028 -157864404 + (GGGGA)n Simple_repeat Simple_repeat 3 61 0 6 885 283 252 118 30 chr1 39331141 39331276 -157864156 + RSINE1 SINE B4 5 151 -14 6 885 180 0 0 0 chr1 39331280 39331300 -157864132 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 885 463 350 81 31 chr1 39331412 39331771 -157863661 + L1MD2 LINE L1 5513 5889 -470 5 885 491 267 70 54 chr1 39331794 39331980 -157863452 + B3A SINE B2 1 189 -6 6 885 327 25 0 0 chr1 39332094 39332134 -157863298 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 885 903 293 27 15 chr1 39332135 39332464 -157862968 - Lx9 LINE L1 -162 7482 7150 6 885 300 111 0 0 chr1 39332579 39332633 -157862799 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 885 587 240 54 59 chr1 39333546 39333732 -157861700 - Lx9 LINE L1 -533 7111 6927 6 885 1329 87 11 4 chr1 39333740 39333973 -157861459 + ORR1A2 LTR MaLR 1 319 -8 6 885 350 307 26 0 chr1 39334061 39334175 -157861257 - Tigger5 DNA MER2_type 0 2406 2290 6 885 521 341 82 0 chr1 39334204 39334386 -157861046 - Tigger5 DNA MER2_type -2209 197 1 6 885 1889 181 37 21 chr1 39334563 39334718 -157860714 + ORR1C2 LTR MaLR 1 153 -231 6 885 243 0 0 0 chr1 39334718 39334745 -157860687 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 885 1889 181 37 21 chr1 39334745 39334967 -157860465 + ORR1C2 LTR MaLR 154 383 -1 6 885 363 312 27 18 chr1 39338999 39339110 -157856322 + MIR SINE MIR 81 192 -70 6 885 290 173 0 13 chr1 39339267 39339343 -157856089 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 885 379 119 29 43 chr1 39339344 39339414 -157856018 - HAL1-3A_ME LINE L1 -831 2027 1959 6 885 308 330 129 22 chr1 39340171 39340462 -157854970 + L1ME1 LINE L1 5336 5657 -522 6 885 579 15 0 0 chr1 39340517 39340585 -157854847 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 885 339 130 0 0 chr1 39340586 39340640 -157854792 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 6 885 368 240 150 0 chr1 39340646 39340746 -157854686 - PB1D10 SINE Alu 0 117 3 6 885 23 0 0 0 chr1 39340759 39340782 -157854650 + AT_rich Low_complexity Low_complexity 1 23 0 6 885 2241 101 3 51 chr1 39340783 39341118 -157854314 + ORR1A2 LTR MaLR 1 319 -8 6 885 257 333 121 24 chr1 39341125 39341168 -157854264 - B3 SINE B2 -34 182 1 6 885 644 236 8 0 chr1 39341168 39341291 -157854141 - RSINE1 SINE B4 -40 125 2 6 885 285 216 173 19 chr1 39341327 39341483 -157853949 + L1ME1 LINE L1 5778 5957 -222 6 885 909 245 10 0 chr1 39342776 39342976 -157852456 - B3 SINE B2 -10 206 5 6 885 1098 303 69 13 chr1 39343228 39343689 -157851743 - L1MC1 LINE L1 -5 6328 5842 6 885 1310 91 23 6 chr1 39345095 39345272 -157850160 + B2_Mm2 SINE B2 2 181 -14 6 885 210 167 0 23 chr1 39345633 39345676 -157849756 + (CCTG)n Simple_repeat Simple_repeat 4 45 0 6 885 267 31 0 0 chr1 39345808 39345840 -157849592 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 885 208 278 163 10 chr1 39346025 39346123 -157849309 - MIR SINE MIR -149 113 1 6 885 301 253 154 0 chr1 39346207 39346298 -157849134 + MER5B DNA MER1_type 4 108 -70 6 885 974 286 47 24 chr1 39346406 39346616 -157848816 - B4 SINE B4 0 292 82 6 885 393 22 0 0 chr1 39346616 39346662 -157848770 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 885 974 286 47 24 chr1 39346662 39346705 -157848727 - B4 SINE B4 -211 81 34 6 885 1385 176 106 45 chr1 39346733 39347025 -157848407 - MTC LTR MaLR -4 417 108 6 885 2052 129 78 12 chr1 39346998 39347344 -157848088 + MTC LTR MaLR 53 421 0 6 885 942 80 4 47 chr1 39347537 39347772 -157847660 + (TCTCCC)n Simple_repeat Simple_repeat 1 224 0 6 885 224 338 25 0 chr1 39347804 39347884 -157847548 + ID4_ SINE ID 2 83 0 6 885 285 29 0 0 chr1 39347986 39348020 -157847412 + (TGG)n Simple_repeat Simple_repeat 1 34 0 6 885 180 0 0 0 chr1 39348022 39348042 -157847390 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 885 1189 57 0 0 chr1 39348065 39348205 -157847227 - B1_Mus1 SINE Alu -8 140 1 6 885 1350 97 0 30 chr1 39348294 39348495 -157846937 + B2_Mm2 SINE B2 1 195 0 6 885 214 281 0 79 chr1 39348938 39349027 -157846405 - ID4_ SINE ID 0 83 2 6 885 588 223 171 47 chr1 39349652 39349845 -157845587 + ID_B1 SINE B4 3 219 -5 6 885 891 279 52 59 chr1 39349880 39350166 -157845266 + B4 SINE B4 9 292 0 6 885 204 381 0 0 chr1 39350173 39350278 -157845154 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 885 1119 72 0 0 chr1 39351549 39351687 -157843745 + B1_Mus2 SINE Alu 2 139 -8 6 885 309 51 0 0 chr1 39351687 39351726 -157843706 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 885 2282 91 26 0 chr1 39352074 39352383 -157843049 + ORR1A2 LTR MaLR 3 319 -8 6 885 428 179 67 13 chr1 39352387 39352491 -157842941 - B3A SINE B2 -87 108 1 6 885 405 0 0 0 chr1 39352943 39352988 -157842444 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 6 885 229 176 141 51 chr1 39352989 39353067 -157842365 + L1M3b LINE L1 272 356 -5925 6 885 671 301 62 14 chr1 39353136 39353426 -157842006 + L1MA6 LINE L1 5980 6283 -17 6 885 429 306 55 31 chr1 39353597 39353793 -157841639 - MER20 DNA MER1_type -554 229 37 6 885 4962 59 0 16 chr1 39353854 39354494 -157840938 + L1Md_F2 LINE L1 5941 6570 -12 6 885 773 266 145 40 chr1 39354503 39355000 -157840432 + L1_Mur3 LINE L1 4915 5488 -392 6 885 591 292 114 15 chr1 39355013 39355277 -157840155 + L1_Rod LINE L1 780 1069 -6539 6 885 1124 222 195 9 chr1 39355265 39355701 -157839731 + L1_Rod LINE L1 1228 1744 -4103 6 885 229 135 0 25 chr1 39356390 39356434 -157838998 - PB1D7 SINE Alu -52 65 23 6 885 2648 29 0 6 chr1 39359595 39359907 -157835525 - L1Md_F2 LINE L1 0 6582 6273 6 885 206 305 63 108 chr1 39360340 39360498 -157834934 - MIR SINE MIR -11 251 101 6 885 420 20 0 0 chr1 39361168 39361217 -157834215 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 6 885 627 188 17 0 chr1 39361311 39361487 -157833945 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 885 281 188 12 0 chr1 39361500 39361580 -157833852 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 885 934 234 83 0 chr1 39362120 39362312 -157833120 + B3 SINE B2 1 208 -8 6 885 326 267 0 13 chr1 39362430 39362506 -157832926 + RSINE1 SINE B4 2 76 -89 6 885 233 381 0 0 chr1 39362636 39362720 -157832712 - LTR53 LTR ERVL -71 448 365 6 885 266 243 107 80 chr1 39362811 39362923 -157832509 - LTR53 LTR ERVL -267 252 138 6 885 248 318 22 22 chr1 39364668 39364758 -157830674 - Tigger5 DNA MER2_type -1 2405 2316 6 885 382 376 12 6 chr1 39364810 39364973 -157830459 - Tigger5 DNA MER2_type -2203 203 40 6 885 441 0 0 0 chr1 39365110 39365159 -157830273 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 885 2126 172 17 17 chr1 39366279 39366681 -157828751 + MTC LTR MaLR 12 413 -8 6 885 207 100 0 0 chr1 39367715 39367745 -157827687 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 6 885 312 27 0 0 chr1 39367746 39367783 -157827649 + (CATA)n Simple_repeat Simple_repeat 4 40 0 6 885 228 276 123 75 chr1 39368071 39368177 -157827255 - RMER15 LTR ERVL -105 470 360 6 885 351 233 0 0 chr1 39368244 39368317 -157827115 - Lx8 LINE L1 -356 7117 7045 6 885 343 215 0 0 chr1 39368431 39368496 -157826936 - ID4 SINE ID -18 65 1 6 885 594 0 0 0 chr1 39370032 39370098 -157825334 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 885 345 93 0 0 chr1 39370098 39370151 -157825281 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 885 672 13 0 0 chr1 39372329 39372406 -157823026 + (GAA)n Simple_repeat Simple_repeat 2 78 0 6 885 1294 281 60 14 chr1 39372414 39372901 -157822531 + L1MB2 LINE L1 5609 6117 -54 6 885 214 108 13 51 chr1 39373293 39373371 -157822061 + (TTTG)n Simple_repeat Simple_repeat 3 77 0 6 885 591 249 62 73 chr1 39373659 39373919 -157821513 + L1MA6 LINE L1 6042 6298 -2 6 885 184 286 81 73 chr1 39375463 39375599 -157819833 + L4 LINE RTE 236 372 -1657 6 885 414 0 0 0 chr1 39377404 39377450 -157817982 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 885 1128 136 11 6 chr1 39377580 39377758 -157817674 + B2_Mm1t SINE B2 1 179 -14 6 885 337 142 0 39 chr1 39377845 39377912 -157817520 + B2_Mm2 SINE B2 47 109 -107 6 885 240 59 0 0 chr1 39377920 39377954 -157817478 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 6 885 1150 95 65 0 chr1 39378225 39378394 -157817038 + B2_Mm2 SINE B2 2 181 -14 6 885 411 66 359 0 chr1 39378422 39378531 -157816901 + B2_Mm2 SINE B2 47 194 -1 6 885 800 351 48 18 chr1 39379376 39379710 -157815722 - MER2 DNA MER2_type -1 344 1 6 885 258 358 85 36 chr1 39380311 39380534 -157814898 - ORR1E LTR MaLR -105 254 21 6 885 1030 188 77 10 chr1 39380750 39380959 -157814473 + URR1A DNA MER1_type 3 225 -1 6 885 222 343 29 39 chr1 39381109 39381212 -157814220 + MIR SINE MIR 115 216 -46 6 885 195 129 0 0 chr1 39382101 39382132 -157813300 + (TTC)n Simple_repeat Simple_repeat 1 31 0 6 885 226 243 122 0 chr1 39384004 39384078 -157811354 + MER5A1 DNA MER1_type 1 83 -83 6 885 247 277 46 0 chr1 39384901 39384966 -157810466 + B4 SINE B4 9 76 -216 6 885 273 89 0 0 chr1 39385704 39385749 -157809683 + (A)n Simple_repeat Simple_repeat 1 45 0 6 885 487 223 54 0 chr1 39386020 39386132 -157809300 + PB1D7 SINE Alu 2 119 -1 6 885 510 270 127 27 chr1 39386190 39386411 -157809021 + MER2 DNA MER2_type 45 287 -58 6 885 750 192 4 13 chr1 39386417 39386650 -157808782 + (TATATG)n Simple_repeat Simple_repeat 1 230 0 6 885 195 42 0 0 chr1 39387201 39387225 -157808207 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 885 316 0 45 0 chr1 39387250 39387294 -157808138 + (TTTTTG)n Simple_repeat Simple_repeat 6 51 0 7 885 1159 69 7 0 chr1 39387294 39387439 -157807993 - B1_Mm SINE Alu 0 147 2 7 885 250 251 123 80 chr1 39389641 39389853 -157805579 - RMER12 LTR ERVK -365 957 737 7 885 1573 161 138 23 chr1 39390928 39391277 -157804155 - MTD LTR MaLR -30 389 1 7 885 421 235 108 108 chr1 39394250 39394280 -157801152 - B2_Mm2 SINE B2 -8 187 159 7 885 293 47 23 0 chr1 39394280 39394323 -157801109 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 885 611 235 108 108 chr1 39394323 39394478 -157800954 - B3A SINE B2 -34 164 2 7 885 2175 168 58 3 chr1 39398153 39398530 -157796902 + MTC LTR MaLR 5 402 -19 7 885 3672 156 48 11 chr1 39398537 39398950 -157796482 + MTC-int LTR MaLR 7 445 -813 7 885 576 0 0 0 chr1 39398950 39399014 -157796418 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 885 390 129 0 0 chr1 39399014 39399075 -157796357 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 885 3672 170 42 19 chr1 39399075 39399399 -157796033 + MTC-int LTR MaLR 446 723 -535 7 885 310 154 0 0 chr1 39399396 39399448 -157795984 + MTD LTR MaLR 368 419 0 7 885 407 172 312 0 chr1 39399822 39399915 -157795517 + B1F2 SINE Alu 16 137 -12 7 885 236 53 0 26 chr1 39400096 39400135 -157795297 + (CCCCCA)n Simple_repeat Simple_repeat 2 39 0 7 885 386 319 29 7 chr1 39400834 39400970 -157794462 - MER2 DNA MER2_type -1 344 206 7 885 271 149 128 0 chr1 39401042 39401089 -157794343 - RMER30 DNA MER1_type -116 86 34 7 885 250 279 14 56 chr1 39401125 39401197 -157794235 + Charlie12 DNA MER1_type 2803 2871 -2 7 885 412 264 54 8 chr1 39401197 39401325 -157794107 - MER2 DNA MER2_type -131 214 81 7 885 1099 162 53 10 chr1 39403028 39403234 -157792198 - B3 SINE B2 0 216 2 7 885 232 321 98 69 chr1 39403782 39403986 -157791446 - L2a LINE L2 -223 3203 2994 7 885 183 292 87 33 chr1 39404094 39404186 -157791246 - L2c LINE L2 -85 3302 3206 7 885 513 115 0 0 chr1 39404238 39404316 -157791116 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 885 1011 274 53 82 chr1 39404725 39405175 -157790257 - MTE2a LTR MaLR 0 419 6 7 885 630 0 0 0 chr1 39405202 39405272 -157790160 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 885 693 278 111 67 chr1 39405929 39406226 -157789206 - MLT1A LTR MaLR -64 310 1 7 885 1840 61 248 0 chr1 39407412 39407674 -157787758 - ORR1A2 LTR MaLR 0 327 1 7 885 904 231 247 32 chr1 39407771 39408240 -157787192 - L1MB3 LINE L1 -21 6162 5593 7 885 2454 308 81 105 chr1 39408378 39409672 -157785760 - L1M2 LINE L1 -973 5170 3885 7 885 1037 112 43 38 chr1 39409672 39409858 -157785574 + B2_Mm2 SINE B2 1 187 -8 7 885 2454 308 81 105 chr1 39409858 39410092 -157785340 - L1M2 LINE L1 -2259 3884 3666 7 885 360 0 0 0 chr1 39410092 39410132 -157785300 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 885 2454 308 81 105 chr1 39410132 39410627 -157784805 - L1M2 LINE L1 -2478 3665 3271 7 885 266 0 29 0 chr1 39410627 39410661 -157784771 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 885 2454 308 81 105 chr1 39410661 39411215 -157784217 - L1M2 LINE L1 -2873 3270 2654 7 885 619 179 18 0 chr1 39411246 39411358 -157784074 - PB1D9 SINE Alu -5 115 2 7 885 219 36 0 0 chr1 39411372 39411400 -157784032 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 885 1165 43 0 7 chr1 39411400 39411539 -157783893 - B1_Mm SINE Alu -9 138 1 7 885 837 45 0 0 chr1 39411555 39411665 -157783767 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 885 567 195 24 63 chr1 39411699 39411825 -157783607 - B3A SINE B2 -75 123 3 7 885 693 310 69 34 chr1 39411833 39412270 -157783162 - L1_Mur3 LINE L1 -3291 2589 2138 7 885 538 97 29 0 chr1 39412298 39412401 -157783031 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 7 885 625 162 7 105 chr1 39412406 39412426 -157783006 - ID_B1 SINE B4 -1 223 87 7 885 1050 53 0 0 chr1 39412426 39412558 -157782874 - B1_Mus2 SINE Alu -10 137 6 7 885 275 217 52 0 chr1 39412456 39412571 -157782861 - ORR1B1-int LTR MaLR -755 754 634 7 885 979 257 45 144 chr1 39412756 39413160 -157782272 + MTE2a LTR MaLR 1 364 -15 7 885 1152 71 106 12 chr1 39413192 39413214 -157782218 - B2_Mm2 SINE B2 -8 187 161 7 885 191 36 36 0 chr1 39413214 39413242 -157782190 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 7 885 1152 71 106 12 chr1 39413242 39413389 -157782043 - B2_Mm2 SINE B2 -35 160 2 7 885 442 214 11 22 chr1 39413539 39413630 -157781802 - B3A SINE B2 -107 91 2 7 885 225 378 0 27 chr1 39413836 39413983 -157781449 + G-rich Low_complexity Low_complexity 2 144 0 7 885 21 36 0 0 chr1 39414004 39414032 -157781400 + AT_rich Low_complexity Low_complexity 1 28 0 7 885 315 119 0 43 chr1 39414081 39414151 -157781281 + G-rich Low_complexity Low_complexity 5 71 0 7 885 417 267 66 81 chr1 39415217 39415520 -157779912 - L1_Mm LINE L1 -573 5605 5334 7 885 744 75 0 0 chr1 39415520 39415614 -157779818 + B2_Mm2 SINE B2 1 94 -101 7 885 315 0 0 0 chr1 39415649 39415684 -157779748 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 885 1224 65 0 0 chr1 39415685 39415838 -157779594 - B2_Mm2 SINE B2 -41 154 2 7 885 825 239 94 30 chr1 39415918 39416003 -157779429 - B3 SINE B2 0 216 121 7 885 2470 67 41 0 chr1 39416003 39416317 -157779115 + ORR1A2 LTR MaLR 1 327 0 7 885 825 239 94 30 chr1 39416317 39416434 -157778998 - B3 SINE B2 -96 120 1 7 885 200 200 17 0 chr1 39416688 39416748 -157778684 + G-rich Low_complexity Low_complexity 4 64 0 7 885 240 35 0 0 chr1 39416950 39416979 -157778453 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 885 1097 66 0 21 chr1 39416979 39417119 -157778313 - B1_Mus2 SINE Alu -10 137 1 7 885 230 298 194 21 chr1 39420352 39420496 -157774936 - ORR1E LTR MaLR -166 193 25 7 885 941 96 0 7 chr1 39420578 39420714 -157774718 - B1_Mus1 SINE Alu 0 148 14 7 885 1088 75 0 0 chr1 39421347 39421481 -157773951 + B1_Mm SINE Alu 1 134 -13 7 885 1246 48 0 0 chr1 39421796 39421943 -157773489 - B1_Mus1 SINE Alu 0 148 2 7 885 824 174 14 0 chr1 39422964 39423108 -157772324 - B1_Mur1 SINE Alu -2 147 2 7 885 248 210 48 0 chr1 39423625 39423687 -157771745 + CT-rich Low_complexity Low_complexity 3 67 0 7 885 245 179 231 0 chr1 39423696 39423774 -157771658 - B1F SINE Alu -20 129 34 7 885 254 260 128 83 chr1 39423961 39424070 -157771362 - FAM SINE Alu -61 250 137 7 885 336 269 43 0 chr1 39423978 39424071 -157771361 - ID_B1 SINE B4 -46 178 82 7 885 354 238 62 0 chr1 39426542 39426622 -157768810 - B3 SINE B2 -120 96 12 7 885 489 183 143 9 chr1 39428382 39428487 -157766945 - B1_Mus2 SINE Alu -8 139 21 7 885 252 265 77 148 chr1 39428410 39428565 -157766867 - MT2B LTR ERVL -350 251 108 7 885 1034 59 15 0 chr1 39429841 39429976 -157765456 - B1_Mus1 SINE Alu 0 148 12 7 885 510 165 46 76 chr1 39429866 39429997 -157765435 - MT2B LTR ERVL -323 278 152 7 885 386 145 127 14 chr1 39432101 39432195 -157763237 - B1_Mus1 SINE Alu 0 120 2 7 885 358 238 58 35 chr1 39432425 39432512 -157762920 + B3 SINE B2 101 189 -27 7 885 22 0 0 0 chr1 39432512 39432534 -157762898 + AT_rich Low_complexity Low_complexity 1 22 0 7 885 220 346 0 36 chr1 39432914 39432998 -157762434 + B4A SINE B4 50 130 -162 7 885 296 162 275 14 chr1 39432967 39433036 -157762396 + B1_Mus1 SINE Alu 16 102 -46 7 885 871 246 58 151 chr1 39434449 39434861 -157760571 + MTE2a LTR MaLR 1 374 -5 7 885 354 277 181 7 chr1 39434930 39435068 -157760364 - RSINE1 SINE B4 -2 163 2 7 885 286 295 13 69 chr1 39435070 39435185 -157760247 - PB1D10 SINE Alu -33 116 5 7 885 406 174 105 0 chr1 39435378 39435464 -157759968 + PB1D9 SINE Alu 26 120 0 7 885 274 280 95 78 chr1 39435614 39435730 -157759702 + PB1D9 SINE Alu 1 118 -2 7 885 197 206 0 0 chr1 39436645 39436679 -157758753 - MIRc SINE MIR -116 152 119 7 885 606 190 324 12 chr1 39437569 39437739 -157757693 - URR1A DNA MER1_type -3 223 1 7 885 229 247 60 30 chr1 39438627 39438727 -157756705 + L1M4 LINE L1 4958 5060 -1086 7 885 789 153 0 77 chr1 39438792 39438948 -157756484 + B1_Mur4 SINE Alu 5 148 -2 7 885 24 0 0 0 chr1 39439087 39439111 -157756321 + AT_rich Low_complexity Low_complexity 1 24 0 7 885 240 289 89 32 chr1 39439126 39439283 -157756149 + L1M4 LINE L1 5367 5532 -647 7 885 589 298 148 31 chr1 39439540 39439867 -157755565 + MT2A LTR ERVL 159 601 0 7 885 216 67 0 0 chr1 39440099 39440129 -157755303 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 885 284 143 0 18 chr1 39440129 39440186 -157755246 + GA-rich Low_complexity Low_complexity 2 57 0 7 885 21 0 0 0 chr1 39440571 39440592 -157754840 + AT_rich Low_complexity Low_complexity 1 21 0 7 885 505 304 6 18 chr1 39440610 39440631 -157754801 - RSINE1 SINE B4 0 165 145 7 885 296 60 40 0 chr1 39440631 39440681 -157754751 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 7 885 505 304 6 18 chr1 39440681 39440823 -157754609 - RSINE1 SINE B4 -21 144 4 7 885 780 182 0 8 chr1 39440876 39441009 -157754423 - B1_Mur1 SINE Alu -17 132 1 7 885 189 0 0 0 chr1 39441803 39441824 -157753608 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 885 230 146 0 40 chr1 39441904 39441954 -157753478 + GA-rich Low_complexity Low_complexity 1 48 0 7 885 3409 124 91 100 chr1 39444014 39444810 -157750622 + RMER6A LTR ERVK 1 756 0 7 885 578 151 72 48 chr1 39445086 39445211 -157750221 + ORR1D1 LTR MaLR 1 128 -246 7 885 1281 52 103 11 chr1 39445490 39445511 -157749921 - B2_Mm2 SINE B2 -4 191 161 7 885 339 25 0 0 chr1 39445511 39445551 -157749881 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 885 1281 52 103 11 chr1 39445551 39445704 -157749728 - B2_Mm2 SINE B2 -35 160 1 7 885 604 203 34 8 chr1 39445704 39445815 -157749617 - ID_B1 SINE B4 -26 198 84 7 885 370 324 9 9 chr1 39445856 39445962 -157749470 - PB1D10 SINE Alu -11 106 1 7 885 264 336 48 72 chr1 39445962 39446010 -157749422 - B4A SINE B4 -205 87 43 7 885 22 35 0 0 chr1 39446726 39446755 -157748677 + AT_rich Low_complexity Low_complexity 1 29 0 7 885 292 173 19 0 chr1 39446846 39446898 -157748534 - B3A SINE B2 -140 58 6 8 885 237 98 0 0 chr1 39447187 39447228 -157748204 + (CCTG)n Simple_repeat Simple_repeat 3 43 0 8 885 1272 97 0 84 chr1 39447300 39447503 -157747929 + B2_Mm2 SINE B2 1 186 -9 8 885 549 291 72 21 chr1 39447526 39447719 -157747713 + B4A SINE B4 1 203 -89 8 885 297 0 0 0 chr1 39448774 39448807 -157746625 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 885 493 263 39 7 chr1 39449460 39449613 -157745819 + L1MB3 LINE L1 6010 6167 -16 8 885 755 186 0 2 chr1 39449625 39449760 -157745672 - B1_Mur1 SINE Alu 0 149 18 8 885 1265 27 0 0 chr1 39449881 39450028 -157745404 - B2_Mm2 SINE B2 -47 148 2 8 885 969 212 0 42 chr1 39451346 39451558 -157743874 + B3 SINE B2 1 203 -13 8 885 2262 125 60 19 chr1 39451643 39452044 -157743388 + ORR1B1 LTR MaLR 5 386 -8 8 885 671 273 126 29 chr1 39452051 39452425 -157743007 + L1MB8 LINE L1 5495 5904 -274 8 886 2522 93 12 0 chr1 39453823 39454146 -157741286 + ORR1A2 LTR MaLR 1 327 0 8 886 971 123 21 9 chr1 39454152 39454336 -157741096 + ORR1B2 LTR MaLR 133 367 0 8 886 975 33 0 8 chr1 39454519 39454641 -157740791 - B1_Mm SINE Alu 0 147 27 8 886 1011 147 60 98 chr1 39454948 39455182 -157740250 + URR1B DNA MER1_type 1 225 0 8 886 319 196 175 0 chr1 39456721 39456818 -157738614 - MTE2b LTR MaLR -265 114 1 8 886 295 161 15 61 chr1 39456979 39457006 -157738426 - B2_Mm2 SINE B2 -131 64 40 8 886 1352 81 38 5 chr1 39457006 39457192 -157738240 - B2_Mm2 SINE B2 -3 192 1 8 886 295 161 15 61 chr1 39457192 39457230 -157738202 - B2_Mm2 SINE B2 -156 39 2 8 886 405 288 18 9 chr1 39457652 39457764 -157737668 + B4 SINE B4 8 120 -172 8 886 505 232 71 14 chr1 39457822 39457962 -157737470 + B4 SINE B4 145 292 0 8 886 1326 112 0 5 chr1 39458535 39458724 -157736708 + B2_Mm2 SINE B2 4 191 -4 8 886 498 209 113 0 chr1 39458909 39459024 -157736408 + RSINE1 SINE B4 1 128 -37 8 886 802 325 86 6 chr1 39459120 39459433 -157735999 + MER2 DNA MER2_type 6 343 -2 8 886 309 51 0 0 chr1 39460276 39460315 -157735117 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 886 180 330 0 81 chr1 39460737 39460836 -157734596 - L2c LINE L2 -230 3157 3067 8 886 739 237 62 0 chr1 39461077 39461254 -157734178 - MTE2b LTR MaLR -21 358 171 8 886 284 83 0 20 chr1 39461258 39461307 -157734125 + (TCTCCC)n Simple_repeat Simple_repeat 3 50 0 8 886 320 97 130 101 chr1 39461343 39461371 -157734061 + B3 SINE B2 6 39 -177 8 886 2517 54 45 3 chr1 39461371 39461685 -157733747 + ORR1A2 LTR MaLR 1 327 0 8 886 320 136 116 115 chr1 39461685 39461780 -157733652 + B3 SINE B2 40 194 -4 8 886 421 192 14 0 chr1 39462573 39462646 -157732786 + RSINE1 SINE B4 3 76 -89 8 886 213 178 0 0 chr1 39463042 39463087 -157732345 + (TTG)n Simple_repeat Simple_repeat 1 45 0 8 886 505 213 73 0 chr1 39463087 39463223 -157732209 - B1F1 SINE Alu -2 147 2 8 886 290 277 0 0 chr1 39463263 39463328 -157732104 + MER34A LTR ERV1 5 69 -502 8 886 231 287 81 73 chr1 39464539 39464663 -157730769 - MIRm SINE MIR -86 190 66 8 886 198 103 0 0 chr1 39465727 39465756 -157729676 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 8 886 548 279 29 73 chr1 39466059 39466264 -157729168 - B3A SINE B2 -2 196 1 8 886 1113 218 0 27 chr1 39466411 39466633 -157728799 + B3 SINE B2 1 216 0 8 886 853 146 7 20 chr1 39466659 39466806 -157728626 + B1_Mur3 SINE Alu 5 149 0 8 886 451 216 62 0 chr1 39467515 39467612 -157727820 + RSINE1 SINE B4 2 104 -61 8 886 847 82 0 0 chr1 39467668 39467778 -157727654 + B1_Mus2 SINE Alu 38 147 0 8 886 300 323 60 75 chr1 39467792 39467819 -157727613 + RMER30 DNA MER1_type 71 94 -108 8 886 180 0 0 0 chr1 39467819 39467839 -157727593 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 886 300 323 60 75 chr1 39467839 39467945 -157727487 + RMER30 DNA MER1_type 95 202 0 8 886 646 327 56 28 chr1 39468022 39468377 -157727055 + MLT1B LTR MaLR 10 386 -4 8 886 180 111 0 0 chr1 39468710 39468737 -157726695 + (GAA)n Simple_repeat Simple_repeat 2 28 0 8 886 621 229 49 0 chr1 39469225 39469279 -157726153 + ID SINE ID 25 84 -140 8 886 312 289 35 35 chr1 39469279 39469359 -157726073 + B1_Mur3 SINE Alu 4 83 -66 8 886 972 188 286 11 chr1 39469359 39469628 -157725804 - MTD LTR MaLR -1 418 76 8 886 255 281 24 24 chr1 39469657 39469741 -157725691 - MTD LTR MaLR -328 91 8 8 886 263 246 33 0 chr1 39469745 39469806 -157725626 + ID_B1 SINE B4 161 223 -1 8 886 721 193 70 29 chr1 39470069 39470240 -157725192 + B2_Mm2 SINE B2 8 185 -10 8 886 907 124 47 0 chr1 39470449 39470578 -157724854 + B1_Mus2 SINE Alu 1 135 -12 8 886 204 125 0 0 chr1 39470962 39470994 -157724438 + (T)n Simple_repeat Simple_repeat 1 32 0 8 886 1293 76 58 21 chr1 39470996 39471184 -157724248 - B2_Mm2 SINE B2 0 195 1 8 886 941 215 17 0 chr1 39471327 39471504 -157723928 + B3A SINE B2 1 180 -18 8 886 261 0 0 0 chr1 39471511 39471540 -157723892 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 886 243 0 0 0 chr1 39471566 39471593 -157723839 + (TA)n Simple_repeat Simple_repeat 1 27 0 8 886 249 33 0 0 chr1 39471593 39471622 -157723810 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 886 1228 321 56 7 chr1 39471633 39472222 -157723210 + Lx8 LINE L1 6689 7306 -167 8 886 1288 79 90 0 chr1 39472667 39472845 -157722587 + B2_Mm2 SINE B2 2 195 0 8 886 752 172 208 62 chr1 39473238 39473345 -157722087 - URR1A DNA MER1_type -6 220 124 8 886 1417 61 33 0 chr1 39473345 39473525 -157721907 - B2_Mm2 SINE B2 -8 187 2 8 886 752 172 208 62 chr1 39473525 39473609 -157721823 - URR1A DNA MER1_type -103 123 1 8 886 1289 92 43 5 chr1 39473858 39474044 -157721388 - B2_Mm2 SINE B2 -2 193 1 8 886 535 257 0 0 chr1 39474188 39474289 -157721143 - PB1 SINE Alu -26 101 1 8 886 249 276 0 190 chr1 39474289 39474317 -157721115 - MT2B2 LTR ERVL -437 147 143 8 886 576 319 70 0 chr1 39475213 39475426 -157720006 - MER2 DNA MER2_type -32 313 86 8 886 1023 144 164 5 chr1 39476210 39476405 -157719027 + URR1A DNA MER1_type 1 226 0 8 886 386 252 39 10 chr1 39476976 39477080 -157718352 - PB1D10 SINE Alu -8 109 3 8 886 2410 138 37 7 chr1 39477176 39477584 -157717848 - MTC LTR MaLR -1 420 1 8 886 1210 210 25 18 chr1 39477616 39477893 -157717539 + RLTR16 LTR ERVK 1 279 -226 8 886 232 131 21 21 chr1 39477862 39477909 -157717523 + RLTR16 LTR ERVK 459 505 0 8 886 346 311 119 20 chr1 39477926 39478077 -157717355 - Tigger5 DNA MER2_type -8 2398 2233 8 886 226 326 35 64 chr1 39480816 39480854 -157714578 + MT2B LTR ERVL 127 160 -441 8 886 532 199 31 43 chr1 39480854 39480992 -157714440 + B1_Mur1 SINE Alu 1 147 0 8 886 446 319 171 29 chr1 39481133 39481378 -157714054 + B4A SINE B4 7 286 -6 8 886 399 250 118 12 chr1 39481620 39481790 -157713642 + HAL1b LINE L1 1626 1813 -196 8 886 964 163 106 6 chr1 39483139 39483318 -157712114 - MTC LTR MaLR -2 419 223 8 886 1760 163 251 15 chr1 39483304 39483758 -157711674 - MTC-int LTR MaLR -638 620 60 8 886 1563 179 119 3 chr1 39483749 39484051 -157711381 + ORR1D1 LTR MaLR 20 356 -18 8 886 298 333 128 11 chr1 39484139 39484327 -157711105 + MIR SINE MIR 20 229 -33 8 886 324 152 0 0 chr1 39484468 39484534 -157710898 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 886 265 223 0 21 chr1 39484523 39484619 -157710813 + (TA)n Simple_repeat Simple_repeat 1 94 0 8 886 302 203 0 33 chr1 39484623 39484684 -157710748 + HAL1-3A_ME LINE L1 1975 2033 -825 8 886 337 299 108 10 chr1 39484811 39484956 -157710476 - Tigger5 DNA MER2_type -2163 243 87 8 886 248 273 13 0 chr1 39485113 39485190 -157710242 - L1MC4 LINE L1 -320 7562 7485 8 886 548 253 88 6 chr1 39485329 39485488 -157709944 + B3A SINE B2 1 172 -26 8 886 231 36 0 0 chr1 39485492 39485520 -157709912 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 886 260 289 205 37 chr1 39485643 39485916 -157709516 - L1MC4 LINE L1 -967 7075 6757 8 886 548 215 155 22 chr1 39485960 39486141 -157709291 + B3 SINE B2 4 208 -8 8 886 25 0 0 0 chr1 39486146 39486171 -157709261 + AT_rich Low_complexity Low_complexity 1 25 0 8 886 751 207 7 35 chr1 39486177 39486322 -157709110 + B1_Mur2 SINE Alu 6 146 -3 8 886 1282 69 103 0 chr1 39486329 39486485 -157708947 + B2_Mm2 SINE B2 2 157 -38 8 886 243 0 0 0 chr1 39486485 39486512 -157708920 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 8 886 1282 69 103 0 chr1 39486512 39486530 -157708902 + B2_Mm2 SINE B2 158 192 -3 8 886 218 263 11 0 chr1 39486539 39486634 -157708798 + (TA)n Simple_repeat Simple_repeat 2 97 0 8 886 254 284 15 45 chr1 39486634 39486767 -157708665 - L1MC4 LINE L1 -1339 6703 6575 8 886 256 313 23 46 chr1 39486836 39486923 -157708509 - PB1D10 SINE Alu -32 85 1 8 886 266 311 14 0 chr1 39487412 39487486 -157707946 - ID4_ SINE ID -8 75 1 8 886 268 327 113 34 chr1 39487704 39488030 -157707402 + L1MCb LINE L1 12 363 -5682 8 886 391 331 131 18 chr1 39488097 39488371 -157707061 + L1MCb LINE L1 476 780 -5265 8 886 307 307 131 20 chr1 39488503 39488759 -157706673 + L1MCb LINE L1 1000 1261 -5490 8 886 1191 161 19 10 chr1 39489041 39489248 -157706184 + B3 SINE B2 1 209 -7 8 886 328 160 26 13 chr1 39489255 39489331 -157706101 + (TATG)n Simple_repeat Simple_repeat 3 79 0 8 886 601 285 0 14 chr1 39489759 39489898 -157705534 - ID_B1 SINE B4 -2 222 86 8 886 600 119 267 17 chr1 39490080 39490200 -157705232 + B1_Mur4 SINE Alu 1 150 0 8 886 270 200 114 0 chr1 39490207 39490277 -157705155 + L1M1 LINE L1 5817 5894 -406 8 886 312 257 0 0 chr1 39490286 39490399 -157705033 + (TG)n Simple_repeat Simple_repeat 1 113 0 8 886 443 247 0 6 chr1 39490435 39490594 -157704838 + (TG)n Simple_repeat Simple_repeat 1 158 0 8 886 490 288 177 30 chr1 39490648 39491495 -157703937 + L1MCb LINE L1 2752 3723 -2841 8 886 691 314 142 48 chr1 39491693 39492258 -157703174 + L1MCb LINE L1 3751 4368 -2196 8 886 248 268 69 48 chr1 39492371 39492516 -157702916 + L1M5 LINE L1 4082 4229 -1917 8 886 347 353 153 35 chr1 39492537 39492910 -157702522 + L1MCb LINE L1 4684 5100 -1464 8 886 270 291 133 19 chr1 39493036 39493246 -157702186 + L1MCb LINE L1 5267 5500 -1064 8 886 483 142 19 9 chr1 39493371 39493478 -157701954 + (TATG)n Simple_repeat Simple_repeat 4 111 0 8 886 308 369 116 0 chr1 39493485 39493683 -157701749 + L1MC3 LINE L1 6370 6590 -1195 8 886 659 313 68 58 chr1 39493700 39493995 -157701437 + MLT2B3 LTR ERVL 38 335 -219 8 886 228 184 0 0 chr1 39494148 39494197 -157701235 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 886 406 75 0 29 chr1 39494329 39494398 -157701034 + (TA)n Simple_repeat Simple_repeat 1 67 0 9 886 1071 206 22 31 chr1 39494747 39494973 -157700459 + URR1B DNA MER1_type 2 225 0 9 886 475 260 32 0 chr1 39494991 39495114 -157700318 - HAL1-2a_MD LINE L1 -553 2471 2345 9 886 216 186 0 23 chr1 39495346 39495390 -157700042 + CT-rich Low_complexity Low_complexity 5 47 0 9 886 1911 193 157 11 chr1 39495506 39495977 -157699455 + RMER15 LTR ERVL 35 574 -1 9 886 254 286 20 108 chr1 39496364 39496466 -157698966 + PB1D10 SINE Alu 3 95 -22 9 886 412 165 17 0 chr1 39496774 39496889 -157698543 + (CA)n Simple_repeat Simple_repeat 2 118 0 9 886 2074 199 39 50 chr1 39497499 39498056 -157697376 + RLTR11A2 LTR ERVK 6 527 0 9 886 403 280 0 45 chr1 39498259 39498371 -157697061 + PB1D10 SINE Alu 6 112 -5 9 886 589 265 65 22 chr1 39498365 39498550 -157696882 + B3A SINE B2 6 198 0 9 886 1027 108 7 0 chr1 39499534 39499682 -157695750 + B1_Mur4 SINE Alu 2 150 0 9 886 615 189 0 0 chr1 39501580 39501707 -157693725 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 886 401 297 52 170 chr1 39501945 39502274 -157693158 + B4 SINE B4 2 291 -1 2 886 205 196 21 21 chr1 39502801 39502848 -157692584 - L2b LINE L2 -12 3363 3317 3 886 201 325 39 13 chr1 39504583 39504661 -157690771 + MIRc SINE MIR 39 118 -150 4 886 278 278 0 14 chr1 39504852 39504925 -157690507 + ID4_ SINE ID 2 73 -10 5 886 420 372 90 40 chr1 39504962 39505284 -157690148 + MLT1C LTR MaLR 124 461 -6 6 886 203 61 0 29 chr1 39507440 39507474 -157687958 + (GGGGA)n Simple_repeat Simple_repeat 1 33 0 7 886 633 289 105 0 chr1 39508284 39508474 -157686958 + ID_B1 SINE B4 10 219 -5 8 886 440 287 82 0 chr1 39508586 39508708 -157686724 - B1F2 SINE Alu -17 132 1 9 886 290 321 54 27 chr1 39509091 39509203 -157686229 + PB1D10 SINE Alu 2 116 -1 1 886 1498 254 70 52 chr1 39509208 39509805 -157685627 + Lx8 LINE L1 6552 7159 -314 1 886 588 188 0 0 chr1 39509887 39510020 -157685412 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 886 344 309 115 22 chr1 39510022 39510113 -157685319 + HAL1-3A_ME LINE L1 1975 2071 -787 1 886 722 197 15 15 chr1 39510113 39510247 -157685185 + B1_Mus1 SINE Alu 1 134 -14 1 886 344 309 115 22 chr1 39510247 39510294 -157685138 + HAL1-3A_ME LINE L1 2072 2125 -733 1 886 1130 103 0 0 chr1 39510466 39510612 -157684820 - B1_Mus1 SINE Alu -2 146 1 1 886 583 291 148 12 chr1 39511012 39511269 -157684163 + B4 SINE B4 1 292 0 1 886 571 161 15 0 chr1 39511269 39511406 -157684026 + (CA)n Simple_repeat Simple_repeat 1 139 0 1 886 208 154 19 19 chr1 39511408 39511461 -157683971 + CT-rich Low_complexity Low_complexity 4 56 0 1 886 554 210 0 10 chr1 39512819 39512920 -157682512 + B1F1 SINE Alu 42 141 -8 1 886 457 214 108 31 chr1 39512921 39513051 -157682381 + B1F2 SINE Alu 2 141 -8 2 886 391 260 0 0 chr1 39513028 39513105 -157682327 + ID4 SINE ID 7 83 0 2 886 251 315 29 65 chr1 39513105 39513165 -157682267 + B4 SINE B4 8 139 -153 2 886 192 426 36 7 chr1 39513691 39513828 -157681604 - MIRb SINE MIR -36 232 92 2 886 405 293 181 43 chr1 39514061 39514364 -157681068 + L1MB3 LINE L1 5607 5951 -232 2 886 410 340 44 32 chr1 39514505 39514663 -157680769 + ID_B1 SINE B4 63 222 -2 2 886 320 275 55 0 chr1 39515978 39516087 -157679345 - PB1D10 SINE Alu 0 117 3 2 886 1367 68 11 0 chr1 39516448 39516624 -157678808 + B2_Mm1a SINE B2 2 179 -14 2 886 2275 128 21 11 chr1 39516908 39517280 -157678152 + Lx4A LINE L1 6683 7058 0 2 886 281 326 44 142 chr1 39517441 39517645 -157677787 - MER57C2 LTR ERV1 0 434 251 2 886 429 290 19 65 chr1 39517808 39517963 -157677469 + ID_B1 SINE B4 77 224 0 3 886 402 167 39 19 chr1 39518030 39518134 -157677298 + Lx4B LINE L1 6953 7058 0 3 886 2784 62 83 11 chr1 39518303 39518675 -157676757 - MTB LTR MaLR 0 400 2 3 886 1848 102 89 31 chr1 39519702 39520059 -157675373 - ORR1A2 LTR MaLR 0 346 1 3 886 411 280 17 8 chr1 39520595 39520714 -157674718 + RSINE1 SINE B4 11 130 -35 3 886 387 261 49 25 chr1 39521417 39521539 -157673893 - MER57-int LTR ERV1 -7287 250 126 3 886 198 0 0 0 chr1 39521992 39522014 -157673418 + (T)n Simple_repeat Simple_repeat 1 22 0 3 886 648 20 441 0 chr1 39522014 39522116 -157673316 - B1_Mm SINE Alu 0 147 1 3 886 30 0 0 0 chr1 39523777 39523807 -157671625 + AT_rich Low_complexity Low_complexity 1 30 0 3 886 654 308 143 52 chr1 39524174 39524537 -157670895 - MER21B LTR ERV1 -186 677 282 3 886 302 312 32 0 chr1 39524636 39524729 -157670703 - MER21B LTR ERV1 -749 114 19 3 886 273 326 76 35 chr1 39525292 39525489 -157669943 + L2b LINE L2 2934 3138 -237 4 886 659 192 13 0 chr1 39526220 39526371 -157669061 + C-rich Low_complexity Low_complexity 5 157 0 4 886 332 289 9 37 chr1 39526566 39526674 -157668758 - PB1D10 SINE Alu -11 106 2 4 886 342 321 93 39 chr1 39526781 39526985 -157668447 + MLT1I LTR MaLR 116 330 -81 4 886 228 238 0 0 chr1 39526992 39527034 -157668398 + ID4_ SINE ID 26 67 -16 4 886 463 270 70 103 chr1 39527114 39527188 -157668244 + L1ME3B LINE L1 5622 5691 -549 4 886 1173 195 0 5 chr1 39527188 39527399 -157668033 + B3 SINE B2 1 210 -6 4 886 463 270 70 103 chr1 39527399 39527778 -157667654 + L1ME3B LINE L1 5692 6060 -180 4 886 192 103 0 0 chr1 39528228 39528257 -157667175 - MIRm SINE MIR 0 276 248 4 886 461 249 144 12 chr1 39529341 39529508 -157665924 - MTE2a LTR MaLR 0 379 191 4 886 1495 170 74 13 chr1 39529508 39529806 -157665626 + Lx4A LINE L1 6743 7058 0 4 886 492 230 51 29 chr1 39529967 39530158 -157665274 + B3 SINE B2 3 195 0 5 886 21 0 0 0 chr1 39530238 39530259 -157665173 + AT_rich Low_complexity Low_complexity 1 21 0 5 886 279 68 33 17 chr1 39530271 39530331 -157665101 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 5 886 462 291 22 15 chr1 39530494 39530630 -157664802 - B1F SINE Alu -1 148 12 5 886 452 260 42 13 chr1 39530719 39530845 -157664587 + B1F SINE Alu 1 124 -3 5 886 795 199 0 37 chr1 39532175 39532384 -157663048 + B3 SINE B2 1 194 -1 5 886 1161 168 76 171 chr1 39532426 39532835 -157662597 + ORR1D1 LTR MaLR 5 374 0 5 886 386 121 0 15 chr1 39532881 39532948 -157662484 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 886 28 0 0 0 chr1 39535252 39535280 -157660152 + GC_rich Low_complexity Low_complexity 1 28 0 5 886 21 57 0 0 chr1 39535290 39535325 -157660107 + GC_rich Low_complexity Low_complexity 1 35 0 5 886 554 221 10 0 chr1 39536204 39536308 -157659124 - RSINE1 SINE B4 -33 132 28 6 886 192 215 185 0 chr1 39536645 39536710 -157658722 + L3 LINE CR1 4141 4217 -272 6 886 570 67 0 0 chr1 39537017 39537092 -157658340 + (GAA)n Simple_repeat Simple_repeat 3 77 0 6 886 3240 128 41 71 chr1 39537312 39537769 -157657663 - RMER15 LTR ERVL -2 573 119 6 886 185 0 0 39 chr1 39537769 39537795 -157657637 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 6 886 3240 128 41 71 chr1 39537795 39537885 -157657547 - RMER15 LTR ERVL -457 118 43 6 886 1668 11 22 0 chr1 39537885 39538070 -157657362 - B2_Mm1t SINE B2 -4 189 1 6 886 3240 128 41 71 chr1 39538070 39538109 -157657323 - RMER15 LTR ERVL -533 42 4 6 886 395 299 84 66 chr1 39538127 39538405 -157657027 + MLT1A1 LTR MaLR 214 490 -15 6 886 306 211 293 14 chr1 39538531 39538673 -157656759 + B3A SINE B2 1 182 -16 6 886 226 317 113 73 chr1 39538712 39538916 -157656516 - LTR33 LTR ERVL -303 212 1 6 886 594 314 58 84 chr1 39538966 39539275 -157656157 + MLT1B LTR MaLR 1 301 -89 6 886 279 114 0 0 chr1 39539559 39539603 -157655829 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 886 756 258 50 18 chr1 39540297 39540518 -157654914 + B4 SINE B4 5 232 -60 7 886 543 226 0 19 chr1 39540761 39540865 -157654567 + PB1D9 SINE Alu 10 111 -9 7 886 499 247 26 101 chr1 39540932 39541093 -157654339 + LTR37A LTR ERV1 236 402 -66 7 886 1251 61 0 0 chr1 39541093 39541240 -157654192 + B1_Mus1 SINE Alu 2 148 0 7 886 1009 96 13 0 chr1 39541246 39541402 -157654030 + (GAA)n Simple_repeat Simple_repeat 2 159 0 7 886 499 243 15 104 chr1 39541402 39541473 -157653959 + LTR37A LTR ERV1 363 426 0 7 886 790 251 28 96 chr1 39541514 39541718 -157653714 + B4 SINE B4 26 229 -63 7 886 765 220 42 31 chr1 39541718 39541910 -157653522 + B3A SINE B2 1 194 -4 7 886 790 251 28 96 chr1 39541910 39541987 -157653445 + B4 SINE B4 230 287 -5 7 886 262 238 0 16 chr1 39542005 39542069 -157653363 + (CATA)n Simple_repeat Simple_repeat 1 63 0 7 886 1081 67 0 7 chr1 39542425 39542561 -157652871 + B1_Mm SINE Alu 4 138 -9 7 886 195 100 0 0 chr1 39542572 39542602 -157652830 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 8 886 2031 50 54 0 chr1 39543015 39543274 -157652158 - ORR1A2 LTR MaLR 0 327 55 8 886 225 0 0 0 chr1 39543928 39543953 -157651479 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 886 369 284 17 25 chr1 39544351 39544470 -157650962 + MIRb SINE MIR 29 146 -122 8 886 378 0 0 0 chr1 39544804 39544846 -157650586 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 886 3504 20 2 8 chr1 39545220 39545618 -157649814 + MTA_Mm LTR MaLR 1 396 0 8 886 255 103 0 0 chr1 39545625 39545664 -157649768 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 8 886 264 154 261 0 chr1 39545697 39545762 -157649670 + PB1D10 SINE Alu 23 104 -13 8 886 261 213 0 0 chr1 39545897 39545944 -157649488 - ID SINE ID -150 74 28 8 886 254 276 0 0 chr1 39545944 39545955 -157649477 - ID4 SINE ID -10 73 16 8 886 580 232 65 7 chr1 39546080 39546219 -157649213 - B1_Mur1 SINE Alu -2 147 1 9 886 266 67 22 0 chr1 39546261 39546306 -157649126 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 9 886 1219 105 38 27 chr1 39546333 39546519 -157648913 - B2_Mm1a SINE B2 -5 188 1 9 886 576 125 20 40 chr1 39546559 39546659 -157648773 - B1_Mur4 SINE Alu 0 150 53 9 886 266 315 54 0 chr1 39546679 39546771 -157648661 - Lx7 LINE L1 -1978 5718 5622 9 886 305 298 117 0 chr1 39546778 39546872 -157648560 - ID_B1 SINE B4 -16 208 104 9 886 229 272 194 11 chr1 39546790 39546883 -157648549 - B1_Mus1 SINE Alu -31 117 8 9 886 522 297 45 52 chr1 39546931 39547219 -157648213 + B4A SINE B4 5 290 -2 9 886 317 243 9 97 chr1 39547224 39547256 -157648176 + PB1D9 SINE Alu 17 42 -78 9 886 297 75 0 0 chr1 39547256 39547296 -157648136 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 886 317 243 9 97 chr1 39547296 39547377 -157648055 + PB1D9 SINE Alu 43 120 0 9 886 876 148 0 0 chr1 39547467 39547595 -157647837 + B1_Mus2 SINE Alu 2 129 -18 1 886 273 29 0 0 chr1 39547608 39547642 -157647790 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 1 886 441 0 0 0 chr1 39547642 39547690 -157647742 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1 886 1047 144 186 5 chr1 39548331 39548519 -157646913 - URR1A DNA MER1_type 0 226 5 1 886 22 0 0 30 chr1 39548744 39548764 -157646668 + AT_rich Low_complexity Low_complexity 1 20 0 1 886 6432 154 57 28 chr1 39548764 39549919 -157645513 + Lx5 LINE L1 5862 7050 0 1 886 22 0 0 30 chr1 39549919 39549931 -157645501 + AT_rich Low_complexity Low_complexity 1 12 0 1 886 261 317 34 40 chr1 39550151 39550299 -157645133 + HAL1 LINE L1 693 839 -1668 1 886 312 27 0 0 chr1 39550352 39550389 -157645043 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 886 459 0 0 0 chr1 39550389 39550439 -157644993 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 886 704 292 114 104 chr1 39550578 39551124 -157644308 + HAL1 LINE L1 943 1493 -1014 1 886 1193 132 16 10 chr1 39551133 39551325 -157644107 + B2_Mm2 SINE B2 1 193 -2 1 886 336 269 53 15 chr1 39551327 39551459 -157643973 - MTD LTR MaLR -275 144 8 1 886 271 212 77 66 chr1 39551489 39551580 -157643852 + HAL1 LINE L1 1510 1601 -906 1 886 623 262 218 27 chr1 39551588 39551882 -157643550 - ORR1E LTR MaLR -9 350 1 1 886 876 209 35 135 chr1 39551882 39551981 -157643451 - ORR1E-int LTR MaLR -55 1525 1455 1 886 1045 162 129 16 chr1 39551981 39552015 -157643417 - B3 SINE B2 0 216 185 1 886 591 53 0 0 chr1 39552015 39552090 -157643342 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 886 1045 162 129 16 chr1 39552090 39552249 -157643183 - B3 SINE B2 -32 184 1 1 886 876 209 35 135 chr1 39552249 39552409 -157643023 - ORR1E-int LTR MaLR -126 1454 1295 1 886 2410 261 36 56 chr1 39552409 39553122 -157642310 + Lx7 LINE L1 6315 7013 -683 1 886 270 229 148 0 chr1 39553471 39553532 -157641900 + ID2 SINE ID 12 81 -2 1 886 482 231 39 0 chr1 39553791 39553895 -157641537 + PB1D10 SINE Alu 10 117 0 1 886 893 221 16 48 chr1 39553921 39554130 -157641302 + B3A SINE B2 7 203 -13 1 886 474 209 33 0 chr1 39554336 39554427 -157641005 - ORR1D2 LTR MaLR 0 370 277 1 886 360 219 0 0 chr1 39554426 39554490 -157640942 - ORR1D2 LTR MaLR -306 64 1 1 886 413 236 53 11 chr1 39554493 39554587 -157640845 - MLT1B LTR MaLR -281 109 12 1 886 235 259 0 0 chr1 39555159 39555213 -157640219 - L1M4 LINE L1 -841 5305 5252 1 886 495 321 79 24 chr1 39555228 39555480 -157639952 - MLT1B LTR MaLR -17 373 108 1 886 525 44 0 0 chr1 39555601 39555669 -157639763 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 886 334 268 20 49 chr1 39555853 39555955 -157639477 + PB1D10 SINE Alu 2 100 -17 1 886 257 240 0 0 chr1 39556065 39556115 -157639317 + Lx8 LINE L1 7240 7289 -184 1 886 245 292 0 89 chr1 39556203 39556282 -157639150 - MLT1A0 LTR MaLR 0 408 337 1 886 226 205 11 64 chr1 39556325 39556513 -157638919 + (CACTG)n Simple_repeat Simple_repeat 3 180 0 1 886 359 229 0 23 chr1 39556546 39556720 -157638712 + (TACTG)n Simple_repeat Simple_repeat 5 174 0 1 886 351 261 117 78 chr1 39556801 39556980 -157638452 - MLT1A0 LTR MaLR -179 186 1 1 886 452 306 75 52 chr1 39557095 39557443 -157637989 - Lx9 LINE L1 -4 7469 7114 1 886 371 258 47 70 chr1 39558454 39558480 -157636952 - B1_Mur3 SINE Alu -22 127 4 1 886 410 240 20 50 chr1 39558480 39558581 -157636851 - ID_B1 SINE B4 -42 182 85 1 886 207 0 0 0 chr1 39558699 39558722 -157636710 + (T)n Simple_repeat Simple_repeat 1 23 0 1 886 230 261 29 14 chr1 39558962 39559032 -157636400 - LTR86C LTR ERVL -148 473 403 1 886 488 215 130 65 chr1 39559125 39559309 -157636123 - B3A SINE B2 -1 197 2 1 886 498 96 0 0 chr1 39560508 39560581 -157634851 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 886 477 234 37 0 chr1 39560800 39560907 -157634525 + B1_Mur2 SINE Alu 2 112 -37 1 886 426 39 0 0 chr1 39561024 39561076 -157634356 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 886 223 189 30 67 chr1 39561211 39561225 -157634207 + (TTAAA)n Simple_repeat Simple_repeat 3 15 0 1 886 482 188 327 31 chr1 39561225 39561384 -157634048 + B3 SINE B2 2 207 -9 1 886 223 189 30 67 chr1 39561384 39561533 -157633899 + (TTAAA)n Simple_repeat Simple_repeat 1 144 0 1 886 739 261 67 5 chr1 39561852 39562060 -157633372 + B4A SINE B4 4 224 -68 1 886 1120 229 0 0 chr1 39562075 39562280 -157633152 + B3 SINE B2 4 208 -8 1 886 267 257 0 0 chr1 39562342 39562457 -157632975 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 886 507 216 102 16 chr1 39563140 39563267 -157632165 + RSINE1 SINE B4 2 139 -26 1 886 27 0 0 0 chr1 39563290 39563317 -157632115 + AT_rich Low_complexity Low_complexity 1 27 0 1 886 298 185 0 58 chr1 39563365 39563434 -157631998 - ID2 SINE ID -15 68 4 1 886 232 281 48 12 chr1 39563764 39563847 -157631585 + MLT1K LTR MaLR 510 595 0 1 886 269 281 0 0 chr1 39563916 39563973 -157631459 + B1F1 SINE Alu 1 57 -92 1 886 337 337 32 0 chr1 39564059 39564154 -157631278 + B4A SINE B4 3 100 -192 1 886 267 299 0 22 chr1 39564185 39564274 -157631158 + (CATA)n Simple_repeat Simple_repeat 4 90 0 1 886 355 281 12 0 chr1 39564274 39564445 -157630987 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 886 634 226 83 0 chr1 39564447 39564580 -157630852 - B1_Mur2 SINE Alu -4 145 2 1 886 624 191 47 8 chr1 39564696 39564823 -157630609 - B1_Mur2 SINE Alu 0 149 18 1 886 221 83 28 0 chr1 39564823 39564859 -157630573 + (CCA)n Simple_repeat Simple_repeat 2 38 0 1 886 1170 251 153 8 chr1 39564896 39565261 -157630171 + MTD LTR MaLR 2 419 0 1 886 2975 134 38 8 chr1 39565504 39565890 -157629542 - RLTR28 LTR ERVL -11 513 120 1 886 266 0 29 0 chr1 39565890 39565924 -157629508 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 1 886 2975 134 38 8 chr1 39565924 39566035 -157629397 - RLTR28 LTR ERVL -405 119 2 1 886 263 340 29 39 chr1 39566071 39566175 -157629257 + Tigger7 DNA MER2_type 2380 2482 -9 1 886 387 0 0 0 chr1 39567118 39567161 -157628271 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 886 312 260 192 13 chr1 39567185 39567341 -157628091 - B2_Mm2 SINE B2 -8 187 4 1 886 475 243 45 0 chr1 39567805 39567916 -157627516 - PB1D10 SINE Alu -1 116 1 1 886 1396 94 0 6 chr1 39567947 39568129 -157627303 - B2_Mm2 SINE B2 -13 182 2 1 886 665 210 116 43 chr1 39568135 39568299 -157627133 - B3 SINE B2 0 216 41 1 886 974 63 0 0 chr1 39568310 39568437 -157626995 + B1_Mus1 SINE Alu 2 128 -20 1 886 1069 300 89 50 chr1 39569062 39569381 -157626051 + RMER5 LTR ERV1 32 372 -162 1 886 1345 55 61 6 chr1 39569381 39569562 -157625870 - B2_Mm2 SINE B2 0 195 5 1 886 1069 300 89 50 chr1 39569562 39569726 -157625706 + RMER5 LTR ERV1 373 534 0 1 886 686 310 34 29 chr1 39569763 39570002 -157625430 + Tigger5 DNA MER2_type 3 242 -2164 1 886 316 102 164 33 chr1 39570070 39570131 -157625301 + MTC LTR MaLR 10 78 -343 1 886 538 183 0 0 chr1 39570135 39570228 -157625204 + PB1D9 SINE Alu 2 94 -26 1 886 4236 124 49 11 chr1 39570228 39570881 -157624551 - RLTR33 LTR ERVK 0 678 1 1 886 524 230 43 29 chr1 39570881 39570926 -157624506 + B1_Mur2 SINE Alu 95 142 -7 1 886 3847 145 76 20 chr1 39571099 39571781 -157623651 - RMER6D LTR ERVK 0 720 1 1 886 288 159 0 0 chr1 39571786 39571830 -157623602 + MTC LTR MaLR 82 125 -296 1 886 6563 192 52 28 chr1 39573176 39574568 -157620864 + Lx7 LINE L1 6030 7455 -241 1 886 1206 40 0 33 chr1 39574628 39574641 -157620791 - B1_Mus1 SINE Alu 0 148 140 1 886 401 0 45 30 chr1 39574641 39574707 -157620725 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1 886 1206 40 0 33 chr1 39574707 39574846 -157620586 - B1_Mus1 SINE Alu -9 139 1 1 886 898 168 35 39 chr1 39574951 39575180 -157620252 - Lx7 LINE L1 0 7696 7469 1 886 247 65 43 0 chr1 39575199 39575245 -157620187 + (CAA)n Simple_repeat Simple_repeat 2 49 0 1 886 276 123 381 10 chr1 39575372 39575469 -157619963 - B2_Mm2 SINE B2 -5 190 58 1 886 1250 114 11 0 chr1 39575522 39575698 -157619734 - B2_Mm1t SINE B2 -14 179 2 1 886 220 221 59 0 chr1 39575745 39575813 -157619619 + (CAGA)n Simple_repeat Simple_repeat 1 72 0 1 886 823 176 147 40 chr1 39575961 39576138 -157619294 + B3 SINE B2 1 196 -20 1 886 530 152 95 35 chr1 39576138 39576254 -157619178 + ORR1A4 LTR MaLR 1 123 -206 1 886 1343 132 19 9 chr1 39576377 39576591 -157618841 + U3 snRNA snRNA 1 216 -1 1 886 204 40 0 0 chr1 39576781 39576806 -157618626 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1 886 213 353 79 29 chr1 39577102 39577242 -157618190 + B4 SINE B4 33 179 -113 1 886 369 237 32 21 chr1 39577157 39577252 -157618180 + PB1D7 SINE Alu 5 100 -20 1 886 2636 109 41 17 chr1 39577326 39577386 -157618046 + MTC LTR MaLR 1 60 -361 1 886 7514 44 10 1 chr1 39577386 39578271 -157617161 - RLTR13B1 LTR ERVK 0 893 1 1 886 2636 109 41 17 chr1 39578271 39578621 -157616811 + MTC LTR MaLR 61 421 0 1 886 227 345 81 0 chr1 39578887 39578974 -157616458 - PB1 SINE Alu -11 116 23 1 886 533 129 97 0 chr1 39579718 39579811 -157615621 - B1_Mur3 SINE Alu -6 143 42 1 886 354 183 0 32 chr1 39579887 39579949 -157615483 - B1_Mus1 SINE Alu -88 60 1 1 886 1371 75 21 5 chr1 39579987 39580174 -157615258 + B2_Mm2 SINE B2 2 191 -4 1 886 1243 34 0 0 chr1 39580185 39580332 -157615100 + B1_Mus2 SINE Alu 1 147 0 1 886 332 261 127 77 chr1 39580884 39581147 -157614285 + L1_Mur1 LINE L1 5208 5502 -795 1 886 1129 64 7 0 chr1 39581167 39581308 -157614124 + B1_Mus1 SINE Alu 1 142 -6 1 886 204 40 0 0 chr1 39581312 39581337 -157614095 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 886 310 127 0 52 chr1 39581403 39581461 -157613971 + ID_B1 SINE B4 170 224 0 1 886 290 250 16 0 chr1 39581576 39581640 -157613792 + ID4_ SINE ID 16 80 -3 1 886 317 365 60 74 chr1 39581642 39581892 -157613540 - RMER5 LTR ERV1 -175 359 105 2 886 1108 96 7 0 chr1 39581892 39582038 -157613394 - B1_Mus1 SINE Alu 0 148 2 2 886 317 365 60 74 chr1 39582038 39582151 -157613281 - RMER5 LTR ERV1 -430 104 1 2 886 806 216 37 52 chr1 39582359 39582550 -157612882 + B3 SINE B2 5 192 -24 2 886 246 210 88 48 chr1 39582488 39582613 -157612819 - RMER17C LTR ERVK -100 310 181 2 886 1463 64 0 16 chr1 39583056 39583246 -157612186 - B2_Mm2 SINE B2 -8 187 1 2 110 768 226 24 0 chr1 39583659 39583823 -157611609 + ID_B1 SINE B4 2 169 -55 2 887 339 25 0 0 chr1 39583932 39583972 -157611460 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 887 549 269 20 33 chr1 39585010 39585160 -157610272 + RSINE1 SINE B4 14 161 -4 2 887 515 198 38 0 chr1 39585599 39585705 -157609727 + B1_Mur1 SINE Alu 40 149 0 2 887 247 315 58 86 chr1 39585872 39586011 -157609421 + RLTR40 LTR ERVK 62 196 -621 2 887 427 149 19 0 chr1 39586116 39586223 -157609209 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 887 278 219 16 0 chr1 39586549 39586613 -157608819 + L1_Mur2 LINE L1 3534 3598 -2279 2 887 218 304 25 25 chr1 39586743 39586824 -157608608 - RSINE1 SINE B4 -2 163 83 2 887 386 287 0 11 chr1 39586827 39586922 -157608510 + B3 SINE B2 117 210 -6 2 887 25 0 0 0 chr1 39586934 39586959 -157608473 + AT_rich Low_complexity Low_complexity 1 25 0 2 887 361 303 14 126 chr1 39587033 39587234 -157608198 - ORR1E LTR MaLR -74 322 61 2 887 535 286 33 39 chr1 39587249 39587402 -157608030 + B3 SINE B2 64 215 -1 2 887 246 263 117 0 chr1 39587734 39587871 -157607561 + L1M5 LINE L1 5183 5335 -811 2 887 2035 109 102 43 chr1 39587937 39588309 -157607123 + ORR1B1 LTR MaLR 1 394 0 2 887 207 0 0 0 chr1 39588320 39588343 -157607089 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 887 946 207 4 25 chr1 39588378 39588616 -157606816 + RMER17C LTR ERVK 1 233 -177 2 887 387 0 0 0 chr1 39588623 39588666 -157606766 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 887 1361 25 0 0 chr1 39588666 39588825 -157606607 - B2_Mm1a SINE B2 -33 160 2 2 887 817 146 11 68 chr1 39588813 39588828 -157606604 + RMER17C LTR ERVK 219 231 -179 2 887 1403 79 31 11 chr1 39588828 39589019 -157606413 - B2_Mm2 SINE B2 0 195 1 2 887 817 146 11 68 chr1 39589019 39589179 -157606253 + RMER17C LTR ERVK 232 383 -27 2 887 2267 84 3 25 chr1 39589179 39589496 -157605936 + L1_Mus1 LINE L1 6214 6523 -44 2 887 460 328 74 21 chr1 39589504 39589694 -157605738 - RMER15 LTR ERVL -17 558 359 2 887 319 175 100 0 chr1 39589912 39589989 -157605443 - RMER10A LTR ERVL 0 442 358 2 887 1341 132 65 34 chr1 39589989 39590178 -157605254 + RMER17C LTR ERVK 1 181 -229 2 887 991 95 0 32 chr1 39590178 39590363 -157605069 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 2 887 1341 132 65 34 chr1 39590363 39590464 -157604968 + RMER17C LTR ERVK 182 300 -110 2 887 1200 222 117 40 chr1 39590487 39590638 -157604794 - RMER10A LTR ERVL -63 379 204 2 887 1508 58 11 11 chr1 39590638 39590828 -157604604 + B2_Mm2 SINE B2 2 191 -4 2 887 1200 222 117 40 chr1 39590828 39591028 -157604404 - RMER10A LTR ERVL -239 203 1 2 887 278 379 43 19 chr1 39591041 39591251 -157604181 + MLT1C LTR MaLR 244 458 -9 2 887 432 0 0 0 chr1 39591494 39591542 -157603890 + (TAG)n Simple_repeat Simple_repeat 1 48 0 2 887 386 178 36 7 chr1 39592004 39592106 -157603326 - B1_Mur3 SINE Alu -6 141 31 2 887 26 0 0 0 chr1 39593129 39593155 -157602277 + GC_rich Low_complexity Low_complexity 1 26 0 2 887 284 173 0 24 chr1 39593871 39593954 -157601478 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 2 887 446 204 113 8 chr1 39594595 39594728 -157600704 - B1_Mur3 SINE Alu -1 148 2 2 887 262 233 33 0 chr1 39595009 39595069 -157600363 - PB1D10 SINE Alu -34 83 22 2 887 368 239 22 11 chr1 39595506 39595595 -157599837 - ID_B1 SINE B4 -1 223 134 2 887 703 202 52 0 chr1 39596240 39596373 -157599059 + B1_Mur4 SINE Alu 9 148 -2 2 887 234 0 0 0 chr1 39596920 39596946 -157598486 + (TATG)n Simple_repeat Simple_repeat 4 29 0 2 887 1245 152 29 0 chr1 39597538 39597742 -157597690 - B3 SINE B2 -6 210 1 2 887 1156 43 0 0 chr1 39598009 39598150 -157597282 - B1_Mus2 SINE Alu 0 147 7 2 887 3486 25 5 0 chr1 39598226 39598620 -157596812 - MTA_Mm LTR MaLR 0 396 1 2 887 287 250 173 120 chr1 39598797 39598947 -157596485 - ID_B1 SINE B4 0 224 67 2 887 790 194 0 0 chr1 39599755 39599884 -157595548 - B1_Mur3 SINE Alu -20 129 1 2 887 386 284 59 0 chr1 39600056 39600158 -157595274 - PB1D7 SINE Alu 0 120 13 2 887 1190 41 14 14 chr1 39600425 39600572 -157594860 - B1_Mus1 SINE Alu 0 148 2 2 887 995 41 0 0 chr1 39600754 39600875 -157594557 - B1_Mm SINE Alu 0 147 27 2 887 216 208 29 44 chr1 39600862 39600943 -157594489 - B4 SINE B4 -215 77 2 2 887 620 163 146 8 chr1 39602772 39602902 -157592530 - B1F2 SINE Alu 0 149 2 2 887 228 293 13 39 chr1 39603274 39603352 -157592080 - RMER30 DNA MER1_type -15 187 112 2 887 1589 177 117 8 chr1 39603352 39603726 -157591706 + Lx3C LINE L1 6551 7057 -1 2 887 279 281 62 0 chr1 39603918 39604014 -157591418 + MER82 DNA MER2_type 263 364 -289 2 887 330 289 60 0 chr1 39605940 39606023 -157589409 + PB1D10 SINE Alu 25 112 -5 2 887 1511 58 0 0 chr1 39606032 39606221 -157589211 + L1_Mus1 LINE L1 6379 6567 0 2 887 1162 51 0 0 chr1 39606228 39606366 -157589066 + B1_Mm SINE Alu 1 138 -9 2 887 231 125 0 0 chr1 39606384 39606424 -157589008 + (A)n Simple_repeat Simple_repeat 1 40 0 2 887 973 254 5 0 chr1 39607759 39607964 -157587468 + B3 SINE B2 2 207 -9 2 887 180 0 0 0 chr1 39608537 39608557 -157586875 + (T)n Simple_repeat Simple_repeat 1 20 0 2 887 321 68 0 0 chr1 39608756 39608800 -157586632 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 887 534 297 80 55 chr1 39609886 39610104 -157585328 + B4 SINE B4 1 225 -67 2 887 414 0 0 0 chr1 39610104 39610150 -157585282 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 887 534 297 80 55 chr1 39610150 39610205 -157585227 + B4 SINE B4 226 281 -11 2 887 27 87 0 0 chr1 39610366 39610435 -157584997 + AT_rich Low_complexity Low_complexity 1 69 0 2 887 810 275 10 20 chr1 39610463 39610667 -157584765 - B3 SINE B2 -14 202 1 2 887 703 231 7 14 chr1 39610669 39610814 -157584618 - B1_Mur1 SINE Alu -5 144 1 2 887 524 210 66 16 chr1 39610856 39610977 -157584455 + RSINE1 SINE B4 3 129 -36 2 887 1155 219 25 5 chr1 39611045 39611287 -157584145 + ID_B1 SINE B4 6 254 -38 2 887 22 0 0 0 chr1 39611552 39611574 -157583858 + AT_rich Low_complexity Low_complexity 1 22 0 2 887 290 109 36 0 chr1 39611680 39611735 -157583697 + ORR1D1 LTR MaLR 3 59 -315 2 887 782 166 141 21 chr1 39611752 39611943 -157583489 + ORR1D1 LTR MaLR 159 372 -2 2 887 339 164 0 0 chr1 39615516 39615577 -157579855 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 887 463 244 45 15 chr1 39615592 39615725 -157579707 - B1F2 SINE Alu -8 141 5 2 887 737 155 9 0 chr1 39616902 39617039 -157578393 - B1_Mus1 SINE Alu -3 145 1 2 887 515 307 43 14 chr1 39617904 39618112 -157577320 - ID_B1 SINE B4 -8 216 3 2 887 330 158 0 0 chr1 39618810 39618867 -157576565 - B3A SINE B2 -141 57 1 2 887 1159 121 40 11 chr1 39618883 39619058 -157576374 + B2_Mm2 SINE B2 2 181 -14 2 887 23 97 0 0 chr1 39619123 39619195 -157576237 + AT_rich Low_complexity Low_complexity 1 72 0 2 887 868 138 7 33 chr1 39619807 39619957 -157575475 + B1_Mur3 SINE Alu 2 147 -2 2 887 248 203 44 59 chr1 39620605 39620673 -157574759 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 2 887 241 267 15 134 chr1 39621166 39621300 -157574132 - B4 SINE B4 -173 119 2 2 887 368 169 0 0 chr1 39622832 39622897 -157572535 + B1_Mur4 SINE Alu 86 150 0 2 887 661 200 0 70 chr1 39622932 39623088 -157572344 - B1_Mur2 SINE Alu -4 145 1 2 887 386 216 172 76 chr1 39623922 39624067 -157571365 - B3 SINE B2 -57 159 1 2 887 216 97 0 0 chr1 39624467 39624498 -157570934 + (A)n Simple_repeat Simple_repeat 1 31 0 2 887 231 232 72 0 chr1 39624860 39624929 -157570503 + ID4_ SINE ID 1 74 -9 2 887 2679 30 0 0 chr1 39625777 39626115 -157569317 + ORR1A0 LTR MaLR 1 338 -8 2 887 550 206 263 55 chr1 39626180 39626545 -157568887 + RMER10A LTR ERVL 2 442 0 2 887 460 154 83 46 chr1 39626875 39626984 -157568448 - B1_Mur3 SINE Alu 0 149 37 2 887 363 23 0 0 chr1 39627194 39627238 -157568194 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 887 796 226 84 15 chr1 39627754 39627956 -157567476 + B3 SINE B2 1 216 0 2 887 223 254 16 16 chr1 39628259 39628323 -157567109 + PB1 SINE Alu 11 74 -53 2 887 407 243 46 46 chr1 39629296 39629447 -157565985 - B3A SINE B2 -47 151 1 2 887 22 35 0 0 chr1 39629753 39629782 -157565650 + AT_rich Low_complexity Low_complexity 1 29 0 2 887 621 187 222 28 chr1 39629823 39629999 -157565433 + B3 SINE B2 6 215 -1 2 887 284 302 92 15 chr1 39631767 39631898 -157563534 + MER20 DNA MER1_type 1 141 -78 2 887 181 305 178 8 chr1 39632904 39633033 -157562399 + L3 LINE CR1 3771 3921 -568 2 887 21 57 0 0 chr1 39633629 39633664 -157561768 + GC_rich Low_complexity Low_complexity 1 35 0 2 887 24 53 0 0 chr1 39633848 39633886 -157561546 + GC_rich Low_complexity Low_complexity 1 38 0 2 887 33 43 0 0 chr1 39634088 39634135 -157561297 + GC_rich Low_complexity Low_complexity 1 47 0 2 887 692 201 241 0 chr1 39635844 39636018 -157559414 - B3 SINE B2 0 216 1 2 887 611 152 75 67 chr1 39636486 39636620 -157558812 - RMER17C-int LTR ERVK -3095 143 9 2 887 2070 116 9 77 chr1 39636625 39637065 -157558367 - RMER17C LTR ERVK 0 410 1 2 887 672 13 0 0 chr1 39637239 39637316 -157558116 + (TTCTC)n Simple_repeat Simple_repeat 5 81 0 3 887 794 156 0 0 chr1 39637329 39637457 -157557975 - B1_Mur4 SINE Alu -14 136 9 3 887 254 296 78 61 chr1 39637675 39637855 -157557577 - L1MC5 LINE L1 -55 7906 7724 3 887 909 271 72 20 chr1 39637877 39638182 -157557250 + MTEb LTR MaLR 20 340 -39 3 887 613 184 31 0 chr1 39638281 39638444 -157556988 + CT-rich Low_complexity Low_complexity 1 168 0 3 887 2764 279 126 49 chr1 39638728 39639300 -157556132 + MTEb-int LTR MaLR 1 690 -890 3 887 1818 215 15 27 chr1 39639300 39639702 -157555730 + RMER10B LTR ERVL 2 398 0 3 887 2764 279 126 49 chr1 39639702 39640356 -157555076 + MTEb-int LTR MaLR 691 1321 -259 3 887 3417 256 62 57 chr1 39640522 39641692 -157553740 - Lx7 LINE L1 -286 7410 6235 3 887 766 41 0 0 chr1 39641693 39641791 -157553641 + B2_Mm2 SINE B2 1 98 -97 3 887 751 208 67 49 chr1 39641789 39642012 -157553420 - RLTR11A LTR ERVK -286 242 16 3 887 5425 240 103 22 chr1 39642021 39643723 -157551709 - Lx7 LINE L1 -1743 5953 4113 3 887 631 242 79 21 chr1 39643741 39643931 -157551501 - Lx7 LINE L1 -2089 3791 3591 3 887 618 148 0 0 chr1 39643955 39644056 -157551376 + B1_Mur4 SINE Alu 42 142 -8 3 887 450 0 0 0 chr1 39644056 39644106 -157551326 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 887 535 168 104 69 chr1 39644112 39644285 -157551147 - Lx7 LINE L1 -2284 3596 3418 3 887 808 188 42 31 chr1 39644285 39644375 -157551057 - URR1A DNA MER1_type 0 226 139 3 887 2554 83 3 9 chr1 39644375 39644704 -157550728 + ORR1A2 LTR MaLR 1 327 0 3 887 808 188 42 31 chr1 39644704 39644805 -157550627 - URR1A DNA MER1_type -88 138 33 3 887 589 142 31 115 chr1 39644830 39645021 -157550411 + L1_Mur3 LINE L1 3088 3262 -2618 3 887 2118 237 49 68 chr1 39645021 39645740 -157549692 - Lx7 LINE L1 -2818 3062 2358 3 887 238 342 72 48 chr1 39645740 39645906 -157549526 + MTEb-int LTR MaLR 1410 1579 -1 3 887 1197 297 24 8 chr1 39645908 39646281 -157549151 + MTEb LTR MaLR 1 379 0 3 887 1154 83 0 12 chr1 39646305 39646475 -157548957 + B2_Mm2 SINE B2 4 171 -24 3 887 235 344 0 0 chr1 39646518 39646582 -157548850 + PB1 SINE Alu 4 67 -60 3 887 287 289 75 19 chr1 39646677 39646863 -157548569 - B3A SINE B2 0 216 16 3 887 290 91 0 18 chr1 39647097 39647153 -157548279 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 887 213 39 0 0 chr1 39647973 39647999 -157547433 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 3 887 1197 54 0 13 chr1 39648376 39648525 -157546907 - B1_Mus1 SINE Alu 0 148 2 3 887 324 0 0 0 chr1 39649529 39649565 -157545867 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 887 371 302 62 0 chr1 39649635 39649764 -157545668 + B4 SINE B4 68 204 -88 3 887 822 123 7 61 chr1 39649659 39649806 -157545626 + B1_Mus1 SINE Alu 10 148 0 3 887 466 235 33 79 chr1 39649875 39650028 -157545404 + B1_Mur1 SINE Alu 1 144 -5 3 887 391 303 188 15 chr1 39650204 39650475 -157544957 - MER33 DNA MER1_type -6 318 1 3 887 468 172 23 0 chr1 39651267 39651354 -157544078 + B1_Mur2 SINE Alu 31 119 -30 3 887 465 19 0 0 chr1 39651356 39651410 -157544022 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 887 495 96 0 0 chr1 39651410 39651493 -157543939 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 3 887 243 283 130 18 chr1 39651671 39651840 -157543592 - L1M4 LINE L1 -2730 3416 3229 3 887 23 0 0 0 chr1 39651893 39651916 -157543516 + AT_rich Low_complexity Low_complexity 1 23 0 3 887 714 153 43 14 chr1 39651926 39652065 -157543367 - B1_Mus1 SINE Alu -5 143 1 3 887 225 0 0 0 chr1 39652088 39652113 -157543319 + (T)n Simple_repeat Simple_repeat 1 25 0 3 887 989 122 12 0 chr1 39652136 39652300 -157543132 + (TCTCCC)n Simple_repeat Simple_repeat 3 168 0 3 887 655 197 17 0 chr1 39652307 39652424 -157543008 - B1_Mur2 SINE Alu -30 119 1 3 887 381 329 70 19 chr1 39652424 39652459 -157542973 - B4 SINE B4 -80 192 47 3 887 516 273 15 0 chr1 39652526 39652658 -157542774 - ID_B1 SINE B4 -4 220 87 3 887 273 272 97 0 chr1 39652661 39652764 -157542668 - L1M4 LINE L1 -3207 2939 2827 3 887 206 246 46 0 chr1 39652765 39652830 -157542602 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 887 597 243 25 55 chr1 39653154 39653354 -157542078 + L1MC1 LINE L1 6129 6322 -11 3 887 358 159 43 13 chr1 39653417 39653531 -157541901 + B1_Mur4 SINE Alu 1 119 -1 3 887 1096 59 0 0 chr1 39653542 39653678 -157541754 + B1_Mus2 SINE Alu 2 137 -10 3 887 216 0 0 0 chr1 39653678 39653702 -157541730 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 887 477 97 0 0 chr1 39653765 39653837 -157541595 + (T)n Simple_repeat Simple_repeat 1 72 0 3 887 2570 41 64 93 chr1 39653875 39654251 -157541181 - RLTR10B2 LTR ERVK 0 365 1 3 887 1102 98 68 0 chr1 39655301 39655464 -157539968 - B2_Mm1t SINE B2 -17 176 3 3 887 247 99 71 47 chr1 39656656 39656741 -157538691 + (TTATA)n Simple_repeat Simple_repeat 4 90 0 3 887 275 329 91 21 chr1 39656870 39657013 -157538419 - B4 SINE B4 -10 282 130 3 887 242 250 0 0 chr1 39657058 39657114 -157538318 - MTEb LTR MaLR -119 260 205 3 887 606 254 25 55 chr1 39658427 39658627 -157536805 - L1MC1 LINE L1 -11 6322 6129 3 887 469 291 20 60 chr1 39658639 39658928 -157536504 + B4 SINE B4 11 286 -6 3 887 232 288 55 0 chr1 39659490 39659563 -157535869 - MIRb SINE MIR -162 106 27 3 887 255 93 0 0 chr1 39659760 39659803 -157535629 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 887 195 215 0 0 chr1 39659802 39659867 -157535565 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 887 204 221 0 0 chr1 39659915 39659992 -157535440 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 887 207 157 0 0 chr1 39660039 39660090 -157535342 + CT-rich Low_complexity Low_complexity 1 51 0 3 887 260 323 0 6 chr1 39660090 39660246 -157535186 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 887 352 270 142 8 chr1 39660295 39660422 -157535010 + B1F SINE Alu 1 144 -5 3 887 239 54 0 26 chr1 39660422 39660460 -157534972 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 3 887 294 214 0 0 chr1 39660505 39660594 -157534838 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 887 217 376 43 3 chr1 39660596 39660761 -157534671 - MIR SINE MIR -31 237 63 3 887 516 281 85 25 chr1 39661143 39661344 -157534088 + ERVL-E-int LTR ERVL 3831 4043 -1624 3 887 584 178 0 6 chr1 39661396 39661577 -157533855 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 887 669 181 0 0 chr1 39661600 39661777 -157533655 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 887 667 117 0 0 chr1 39662363 39662466 -157532966 + B1_Mur4 SINE Alu 2 104 -46 3 887 341 200 17 110 chr1 39662364 39662482 -157532950 + MT2B LTR ERVL 167 273 -328 3 887 269 264 30 53 chr1 39663013 39663145 -157532287 + L1MB5 LINE L1 6046 6174 0 3 887 846 300 87 49 chr1 39663232 39663705 -157531727 + RMER5 LTR ERV1 33 523 -11 3 887 21 82 0 0 chr1 39664275 39664324 -157531108 + AT_rich Low_complexity Low_complexity 1 49 0 3 887 1104 49 27 27 chr1 39664326 39664473 -157530959 - B1_Mus1 SINE Alu 0 148 2 3 887 234 316 0 25 chr1 39664525 39664606 -157530826 - ID4 SINE ID -4 79 1 3 887 24 32 0 0 chr1 39664924 39664955 -157530477 + AT_rich Low_complexity Low_complexity 1 31 0 3 887 878 41 131 0 chr1 39664958 39665080 -157530352 + L1_Mus1 LINE L1 6430 6567 0 3 887 209 143 0 45 chr1 39665356 39665400 -157530032 + GA-rich Low_complexity Low_complexity 5 46 0 3 887 380 338 52 60 chr1 39665599 39665848 -157529584 - MLT1D LTR MaLR -5 500 254 3 887 268 296 28 0 chr1 39666396 39666467 -157528965 + polypurine Low_complexity Low_complexity 3 75 0 3 887 314 45 0 22 chr1 39666483 39666528 -157528904 + (CCCCCT)n Simple_repeat Simple_repeat 3 46 0 3 887 296 320 14 105 chr1 39667155 39667298 -157528134 + ORR1D2 LTR MaLR 4 134 -236 3 887 303 49 0 0 chr1 39667395 39667436 -157527996 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 887 230 288 27 27 chr1 39667455 39667530 -157527902 + ORR1D2 LTR MaLR 305 379 0 3 887 189 0 0 0 chr1 39667929 39667950 -157527482 + (T)n Simple_repeat Simple_repeat 1 21 0 3 887 429 191 21 35 chr1 39668111 39668239 -157527193 - L1M2 LINE L1 -1526 4620 4503 3 887 480 325 8 16 chr1 39668318 39668443 -157526989 - PB1 SINE Alu -3 124 1 3 887 257 253 58 0 chr1 39668460 39668547 -157526885 - B3A SINE B2 -5 193 102 3 887 540 0 0 0 chr1 39668565 39668625 -157526807 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 3 887 404 299 9 0 chr1 39668683 39668790 -157526642 - PB1D10 SINE Alu -9 108 1 3 887 287 49 24 0 chr1 39669187 39669228 -157526204 + (TCC)n Simple_repeat Simple_repeat 1 42 0 3 887 606 135 67 0 chr1 39669237 39669341 -157526091 - PB1D9 SINE Alu -8 112 2 3 887 554 202 253 43 chr1 39669624 39669810 -157525622 - URR1B DNA MER1_type 0 225 1 3 887 362 309 150 39 chr1 39669912 39670192 -157525240 - LTR65 LTR ERV1 -354 315 5 3 887 585 250 14 96 chr1 39670419 39670627 -157524805 + B3A SINE B2 2 192 -6 3 887 312 48 0 0 chr1 39672417 39672459 -157522973 + (GGA)n Simple_repeat Simple_repeat 2 43 0 3 887 324 0 0 0 chr1 39672534 39672570 -157522862 + (A)n Simple_repeat Simple_repeat 1 36 0 3 887 489 290 50 55 chr1 39672645 39672864 -157522568 - ORR1E LTR MaLR -141 218 1 3 887 402 260 0 61 chr1 39672906 39673037 -157522395 - MER57A-int LTR ERV1 -272 5915 5793 3 887 587 302 21 62 chr1 39673046 39673240 -157522192 + ID_B1 SINE B4 1 186 -38 3 887 1191 55 0 7 chr1 39674163 39674311 -157521121 + B1_Mus1 SINE Alu 2 148 0 3 887 470 261 44 16 chr1 39674343 39674522 -157520910 + B4 SINE B4 1 231 -61 3 887 592 258 106 78 chr1 39674522 39674804 -157520628 + B4A SINE B4 1 290 -2 3 887 430 299 44 33 chr1 39674804 39674867 -157520565 + B4A SINE B4 232 291 -1 3 887 701 172 7 0 chr1 39674871 39675022 -157520410 + (CA)n Simple_repeat Simple_repeat 2 153 0 3 887 297 309 18 18 chr1 39675080 39675192 -157520240 + (CATA)n Simple_repeat Simple_repeat 3 114 0 3 887 336 273 66 66 chr1 39675281 39675477 -157519955 - Lx8 LINE L1 0 7473 7278 3 887 252 240 165 29 chr1 39675602 39675705 -157519727 + PB1 SINE Alu 1 117 -10 3 887 900 271 177 24 chr1 39676806 39677229 -157518203 - L1MD1 LINE L1 -25 6217 5730 3 887 504 45 0 0 chr1 39677231 39677298 -157518134 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 887 751 152 48 0 chr1 39677318 39677443 -157517989 - B1_Mur2 SINE Alu -18 131 1 4 887 577 261 17 69 chr1 39677507 39677680 -157517752 - RSINE1 SINE B4 0 165 2 4 887 882 129 0 0 chr1 39677705 39677829 -157517603 - B3 SINE B2 -92 124 1 4 887 522 204 8 15 chr1 39677838 39677972 -157517460 - L1MD1 LINE L1 -1886 4260 4128 3 887 1704 156 80 50 chr1 39680381 39680779 -157514653 - RMER17C LTR ERVK 0 410 1 4 887 306 0 0 0 chr1 39681107 39681141 -157514291 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 887 411 21 0 0 chr1 39681141 39681188 -157514244 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 887 773 242 100 10 chr1 39681340 39681540 -157513892 + MTD LTR MaLR 1 218 -201 4 887 226 273 18 0 chr1 39681615 39681670 -157513762 - AluF_3 SINE Alu -115 196 141 4 887 222 333 73 58 chr1 39681670 39681752 -157513680 - B4A SINE B4 -147 145 7 4 887 774 144 45 8 chr1 39682147 39682280 -157513152 + B1_Mus2 SINE Alu 3 140 -7 4 887 239 0 32 0 chr1 39682280 39682311 -157513121 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 887 441 0 0 0 chr1 39682697 39682746 -157512686 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 887 405 0 0 0 chr1 39682851 39682896 -157512536 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 4 887 453 227 17 22 chr1 39682908 39683088 -157512344 + CT-rich Low_complexity Low_complexity 2 180 0 4 887 1149 185 91 125 chr1 39684240 39684660 -157510772 + MT2A LTR ERVL 6 548 -53 4 887 405 0 0 0 chr1 39684660 39684705 -157510727 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 887 884 225 108 51 chr1 39684705 39684741 -157510691 + MT2A LTR ERVL 549 596 -5 4 887 282 343 85 9 chr1 39684771 39684877 -157510555 - ORR1E LTR MaLR -240 119 6 4 887 2189 302 64 131 chr1 39684863 39684918 -157510514 - MTE-int LTR MaLR -34 1546 1505 4 887 1264 101 32 5 chr1 39684918 39685107 -157510325 - B2_Mm2 SINE B2 0 195 2 4 887 2189 302 64 131 chr1 39685107 39686244 -157509188 - MTE-int LTR MaLR -76 1504 434 4 887 288 0 0 0 chr1 39686299 39686331 -157509101 + (A)n Simple_repeat Simple_repeat 1 32 0 4 887 2268 152 37 11 chr1 39686331 39686711 -157508721 - MTC LTR MaLR -31 390 1 4 887 467 269 211 42 chr1 39686747 39687007 -157508425 - MTE-int LTR MaLR -1246 334 31 4 887 2143 183 50 48 chr1 39687594 39687686 -157507746 - RLTR16 LTR ERVK 0 505 400 4 887 381 43 0 0 chr1 39687686 39687733 -157507699 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 887 2143 183 50 48 chr1 39687733 39688144 -157507288 - RLTR16 LTR ERVK -106 399 2 4 887 830 191 0 0 chr1 39688335 39688466 -157506966 + B1_Mur2 SINE Alu 1 131 -18 4 887 2128 157 6 3 chr1 39688559 39688917 -157506515 - RLTR15 LTR ERVK 0 359 1 4 887 737 190 0 0 chr1 39688973 39689089 -157506343 - B3 SINE B2 -100 116 1 4 887 1018 250 22 15 chr1 39689167 39689435 -157505997 + B4A SINE B4 5 274 -18 4 887 374 200 129 0 chr1 39689489 39689574 -157505858 - PB1D9 SINE Alu -24 96 1 4 887 248 298 76 5 chr1 39689609 39689686 -157505746 + B1_Mur4 SINE Alu 7 85 -35 4 887 336 161 0 75 chr1 39690460 39690527 -157504905 - B3 SINE B2 -148 68 7 4 887 823 336 98 21 chr1 39691146 39691523 -157503909 + MER77 LTR ERVL 194 599 -8 4 887 22 0 0 0 chr1 39692171 39692193 -157503239 + AT_rich Low_complexity Low_complexity 1 22 0 4 887 1352 148 26 18 chr1 39692199 39692426 -157503006 - Lx4A LINE L1 -1 7057 6829 4 887 503 287 0 0 chr1 39692771 39692886 -157502546 - PB1D10 SINE Alu -2 115 1 4 887 234 330 32 42 chr1 39692807 39692902 -157502530 - B4 SINE B4 -125 167 74 4 887 231 301 41 0 chr1 39693005 39693078 -157502354 + MLT1D LTR MaLR 364 439 -66 4 887 387 279 165 31 chr1 39693881 39694136 -157501296 - B4A SINE B4 -2 290 2 4 887 912 294 146 31 chr1 39694316 39694931 -157500501 + L1MB7 LINE L1 5263 5948 -236 4 887 309 197 0 0 chr1 39695190 39695256 -157500176 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 887 611 214 103 0 chr1 39695568 39695694 -157499738 - B1F1 SINE Alu 0 149 11 4 887 183 184 0 0 chr1 39695845 39695883 -157499549 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 887 426 257 0 0 chr1 39695901 39696049 -157499383 + (CA)n Simple_repeat Simple_repeat 2 149 0 4 887 313 305 48 71 chr1 39696071 39696339 -157499093 - RMER12 LTR ERVK -334 988 727 4 887 295 289 46 15 chr1 39697418 39697548 -157497884 - L1MA8 LINE L1 -284 6007 5874 4 887 258 32 0 0 chr1 39697974 39698005 -157497427 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 887 484 328 38 0 chr1 39698006 39698137 -157497295 - RSINE1 SINE B4 -19 146 11 4 887 544 272 173 0 chr1 39698165 39698367 -157497065 - MER2 DNA MER2_type -92 253 17 4 887 754 236 58 19 chr1 39698612 39698819 -157496613 - B3 SINE B2 0 216 2 4 887 195 114 0 0 chr1 39698928 39698963 -157496469 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 887 510 291 19 104 chr1 39699042 39699253 -157496179 + B3A SINE B2 6 198 0 4 887 774 247 26 10 chr1 39699479 39699671 -157495761 - B3A SINE B2 -3 195 1 4 887 270 289 72 79 chr1 39700100 39700239 -157495193 + MLT1A1 LTR MaLR 1 138 -270 4 887 749 253 85 70 chr1 39700299 39700691 -157494741 + RLTR11A2 LTR ERVK 2 418 -27 4 887 285 291 11 11 chr1 39700869 39700956 -157494476 + MLT1A1 LTR MaLR 318 404 -4 4 887 452 216 5 0 chr1 39702329 39702524 -157492908 + (CA)n Simple_repeat Simple_repeat 1 196 0 4 887 792 156 0 0 chr1 39702544 39702724 -157492708 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 887 201 197 0 0 chr1 39702764 39702825 -157492607 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 887 378 0 0 0 chr1 39703621 39703663 -157491769 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 887 312 136 147 29 chr1 39703889 39703957 -157491475 + ID4_ SINE ID 2 77 -6 4 887 310 246 0 0 chr1 39703972 39704033 -157491399 + ID_B1 SINE B4 156 216 -8 4 887 484 314 98 16 chr1 39704206 39704452 -157490980 + Tigger5 DNA MER2_type 2131 2396 -10 4 887 321 271 0 0 chr1 39705850 39705920 -157489512 - PB1D10 SINE Alu -3 114 45 4 887 616 296 0 0 chr1 39706085 39706227 -157489205 - B4 SINE B4 -69 223 82 4 887 235 271 0 124 chr1 39706894 39706991 -157488441 + MER67C LTR ERV1 204 288 -423 4 887 191 278 19 0 chr1 39708104 39708158 -157487274 + MIRm SINE MIR 72 126 -150 4 887 252 120 0 0 chr1 39708310 39708360 -157487072 + (T)n Simple_repeat Simple_repeat 1 50 0 4 887 1194 54 0 13 chr1 39708362 39708512 -157486920 - B1_Mus1 SINE Alu 0 148 1 4 887 283 233 31 169 chr1 39709059 39709219 -157486213 + MT2B2 LTR ERVL 126 263 -321 4 887 678 220 27 34 chr1 39709102 39709248 -157486184 + ID_B1 SINE B4 72 216 -8 4 887 308 282 62 141 chr1 39709787 39710014 -157485418 - L1M5 LINE L1 -629 5611 5403 4 887 620 230 385 46 chr1 39710014 39710296 -157485136 - MTEa LTR MaLR 0 379 2 4 887 745 290 127 0 chr1 39710458 39710758 -157484674 - L1MB2 LINE L1 -153 6254 5917 4 887 345 24 0 0 chr1 39710785 39710827 -157484605 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 4 887 2156 199 34 30 chr1 39710831 39711272 -157484160 + RMER19A LTR ERVK 32 474 -263 4 887 228 310 63 79 chr1 39711303 39711492 -157483940 - RLTR41 LTR ERV1 -62 384 199 4 887 2110 67 30 23 chr1 39711838 39712143 -157483289 - IAPLTR2b LTR ERVK -20 307 1 4 887 915 233 60 0 chr1 39712260 39712475 -157482957 + RMER19A LTR ERVK 510 737 0 4 887 340 219 19 26 chr1 39712486 39712605 -157482827 - L1MB2 LINE L1 -509 5895 5779 4 887 22 56 0 0 chr1 39712613 39712649 -157482783 + AT_rich Low_complexity Low_complexity 1 36 0 4 887 240 349 98 64 chr1 39712683 39712764 -157482668 - Lx9 LINE L1 -59 7414 7333 4 887 261 0 0 0 chr1 39712764 39712793 -157482639 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4 887 816 293 70 22 chr1 39712793 39713108 -157482324 - Lx9 LINE L1 -180 7464 7108 4 887 575 263 33 75 chr1 39713111 39713395 -157482037 - L1MB2 LINE L1 -662 5754 5480 4 887 301 208 0 0 chr1 39713399 39713452 -157481980 - ORR1E LTR MaLR -4 355 303 4 887 1427 237 164 24 chr1 39713455 39714136 -157481296 - MTD LTR MaLR -13 406 1 4 887 875 272 127 17 chr1 39714136 39714498 -157480934 - L1MB2 LINE L1 -893 5483 5082 4 887 445 230 145 32 chr1 39714647 39714765 -157480667 - B1F SINE Alu -6 143 11 4 110 259 236 34 0 chr1 39714765 39714854 -157480578 - L1MB2 LINE L1 -3100 3276 3185 4 888 186 43 0 0 chr1 39714857 39714880 -157480552 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 888 1587 209 91 19 chr1 39714881 39715259 -157480173 + MTD LTR MaLR 12 405 -14 4 888 422 247 95 30 chr1 39715259 39715444 -157479988 - L1MB2 LINE L1 -3180 3199 3005 4 888 1315 206 121 15 chr1 39715446 39715776 -157479656 - RMER4B LTR ERVK -204 381 17 4 888 385 217 16 0 chr1 39715919 39716048 -157479384 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 888 1039 128 6 0 chr1 39716104 39716260 -157479172 - B2_Mm2 SINE B2 -38 157 1 4 888 263 300 91 0 chr1 39716373 39716483 -157478949 - L1MB2 LINE L1 -3962 2422 2303 4 888 3513 8 15 0 chr1 39716503 39716893 -157478539 + MTA_Mm LTR MaLR 1 396 0 4 888 528 218 191 46 chr1 39717179 39717352 -157478080 - B3A SINE B2 0 198 1 4 888 2214 158 11 16 chr1 39717439 39717813 -157477619 - ORR1C1 LTR MaLR 0 378 7 4 888 380 307 170 23 chr1 39717839 39718523 -157476909 - L1MB2 LINE L1 -4596 1788 1005 4 888 693 286 29 12 chr1 39718608 39718956 -157476476 + L1M4 LINE L1 5223 5577 -601 4 888 404 126 51 51 chr1 39719114 39719290 -157476142 + (TCTG)n Simple_repeat Simple_repeat 3 178 0 4 888 307 270 56 11 chr1 39720471 39720561 -157474871 + MLT1H2 LTR MaLR 38 131 -358 4 888 251 338 14 0 chr1 39720768 39720842 -157474590 - ID4 SINE ID -4 79 5 4 888 624 219 24 16 chr1 39720916 39721041 -157474391 - RSINE1 SINE B4 -29 136 11 4 888 322 281 102 92 chr1 39721268 39721464 -157473968 - B3A SINE B2 0 198 1 4 888 432 0 0 0 chr1 39721838 39721886 -157473546 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 888 621 192 72 0 chr1 39723257 39723382 -157472050 + RSINE1 SINE B4 3 136 -29 4 888 666 286 172 31 chr1 39724551 39724976 -157470456 + MER31A LTR ERV1 1 485 0 4 888 243 0 0 0 chr1 39726005 39726032 -157469400 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 888 465 217 268 16 chr1 39726286 39726469 -157468963 + B4 SINE B4 2 230 -62 4 888 283 272 0 32 chr1 39726473 39726659 -157468773 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 888 368 201 0 14 chr1 39726817 39726958 -157468474 + (TCTCTG)n Simple_repeat Simple_repeat 2 140 0 4 888 389 126 12 62 chr1 39726939 39727100 -157468332 + (TCTG)n Simple_repeat Simple_repeat 4 156 0 5 888 228 231 62 37 chr1 39728113 39728194 -157467238 - MTEa LTR MaLR -43 336 254 5 888 402 293 67 60 chr1 39728229 39728378 -157467054 - MTEa LTR MaLR -209 170 21 5 888 636 303 25 0 chr1 39729297 39729495 -157465937 + Lx6 LINE L1 7241 7443 -17 5 888 309 255 140 20 chr1 39729622 39729863 -157465569 + B4 SINE B4 2 279 -13 5 888 672 175 0 0 chr1 39730040 39730166 -157465266 + CT-rich Low_complexity Low_complexity 4 129 0 5 888 459 0 0 0 chr1 39730357 39730408 -157465024 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 888 653 221 33 7 chr1 39730411 39730561 -157464871 - B3A SINE B2 -44 154 1 5 888 1602 140 40 103 chr1 39730884 39731235 -157464197 + ORR1A4 LTR MaLR 1 329 0 5 888 361 289 88 44 chr1 39731388 39731547 -157463885 + MER57C2 LTR ERV1 264 429 -5 5 888 1113 62 0 27 chr1 39731911 39732060 -157463372 - B1_Mus2 SINE Alu -2 145 1 5 888 452 165 0 11 chr1 39732357 39732449 -157462983 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 888 610 161 29 0 chr1 39732485 39732659 -157462773 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 888 1047 114 21 11 chr1 39732673 39732956 -157462476 + (TCTA)n Simple_repeat Simple_repeat 1 285 0 5 888 691 249 132 0 chr1 39732958 39733155 -157462277 - ID_B1 SINE B4 0 224 2 5 888 338 0 24 0 chr1 39733724 39733766 -157461666 + (TTA)n Simple_repeat Simple_repeat 1 43 0 5 888 358 213 13 0 chr1 39733767 39733842 -157461590 - PB1D10 SINE Alu 0 117 42 5 888 258 198 47 0 chr1 39734573 39734659 -157460773 + CT-rich Low_complexity Low_complexity 3 92 0 5 888 675 192 69 0 chr1 39734663 39734793 -157460639 - B1_Mur3 SINE Alu -6 143 5 5 888 297 172 0 0 chr1 39735107 39735171 -157460261 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 888 1043 165 95 24 chr1 39737333 39737544 -157457888 + URR1A DNA MER1_type 1 226 0 5 888 658 335 63 4 chr1 39738853 39739105 -157456327 - MER2 DNA MER2_type -47 298 32 5 888 955 116 0 0 chr1 39739155 39739301 -157456131 - URR1A DNA MER1_type 0 226 81 5 888 511 326 53 16 chr1 39740067 39740313 -157455119 + MLT1A0 LTR MaLR 17 271 -94 5 888 1005 141 99 5 chr1 39741219 39741411 -157454021 - B3 SINE B2 -6 210 1 5 888 226 220 68 0 chr1 39741427 39741486 -157453946 + B4A SINE B4 83 145 -147 5 888 488 245 0 0 chr1 39741444 39741538 -157453894 + PB1D10 SINE Alu 19 112 -5 5 888 639 37 0 0 chr1 39741550 39741632 -157453800 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 888 428 281 7 0 chr1 39742051 39742197 -157453235 + (CTGTG)n Simple_repeat Simple_repeat 3 149 0 5 888 758 179 0 0 chr1 39742655 39742778 -157452654 - B3 SINE B2 -89 127 5 5 888 183 80 0 0 chr1 39742958 39742983 -157452449 + (ACTG)n Simple_repeat Simple_repeat 4 28 0 5 888 795 211 51 6 chr1 39743233 39743409 -157452023 - B3A SINE B2 -11 187 4 5 888 233 268 23 47 chr1 39743859 39743945 -157451487 + MLT1A1 LTR MaLR 306 389 -19 5 888 306 318 63 11 chr1 39743947 39744122 -157451310 + ORR1E LTR MaLR 1 184 -175 5 888 333 250 116 0 chr1 39744727 39744839 -157450593 + RSINE1 SINE B4 13 137 -28 5 888 225 244 81 11 chr1 39745755 39745842 -157449590 - B3 SINE B2 -2 214 122 5 888 253 317 35 35 chr1 39745807 39745892 -157449540 - B4A SINE B4 -6 286 202 5 888 327 259 129 0 chr1 39746196 39746281 -157449151 - RSINE1 SINE B4 -68 97 2 5 888 468 77 0 0 chr1 39746295 39746360 -157449072 + (TGG)n Simple_repeat Simple_repeat 1 65 0 5 888 530 277 112 38 chr1 39746360 39746600 -157448832 - B4A SINE B4 0 292 35 5 888 1148 48 7 0 chr1 39747224 39747369 -157448063 + B1_Mus2 SINE Alu 1 146 -1 5 888 193 0 61 30 chr1 39747699 39747732 -157447700 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 888 396 0 0 0 chr1 39748605 39748649 -157446783 + (CTG)n Simple_repeat Simple_repeat 3 46 0 5 888 770 273 35 22 chr1 39748859 39749091 -157446341 - B4A SINE B4 -17 275 41 5 888 551 85 12 0 chr1 39749128 39749210 -157446222 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 5 888 570 98 0 0 chr1 39749203 39749285 -157446147 + (TTCTC)n Simple_repeat Simple_repeat 5 86 0 5 888 1281 279 92 11 chr1 39749386 39749766 -157445666 + Lx8 LINE L1 6916 7326 -147 5 888 299 282 12 12 chr1 39750081 39750167 -157445265 + MTEb LTR MaLR 291 376 -3 5 888 621 278 186 16 chr1 39750620 39750942 -157444490 + MLT1D LTR MaLR 112 488 -17 5 888 1119 54 0 13 chr1 39751125 39751274 -157444158 + B1_Mus1 SINE Alu 2 148 0 5 888 766 214 127 11 chr1 39751357 39751546 -157443886 - B3 SINE B2 -5 211 1 5 888 407 19 19 0 chr1 39753983 39754035 -157441397 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 888 454 261 196 6 chr1 39754053 39754211 -157441221 + MTEb-int LTR MaLR 1390 1577 -3 5 888 581 277 89 68 chr1 39754214 39754551 -157440881 + MTEb LTR MaLR 1 344 -35 5 888 212 315 21 11 chr1 39754663 39754732 -157440700 + (TCCA)n Simple_repeat Simple_repeat 3 72 0 5 888 183 80 0 0 chr1 39754732 39754757 -157440675 + (CCCA)n Simple_repeat Simple_repeat 2 26 0 5 888 212 315 21 11 chr1 39754757 39754780 -157440652 + (TCCA)n Simple_repeat Simple_repeat 4 26 0 5 888 203 250 0 0 chr1 39754899 39754947 -157440485 + (CAT)n Simple_repeat Simple_repeat 3 50 0 5 888 986 133 0 13 chr1 39754966 39755118 -157440314 - B1_Mur4 SINE Alu 0 150 1 5 888 198 71 0 0 chr1 39755130 39755158 -157440274 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 888 1186 48 0 0 chr1 39755961 39756106 -157439326 + B1_Mm SINE Alu 3 147 0 5 888 243 146 0 0 chr1 39756370 39756411 -157439021 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 888 272 225 28 0 chr1 39757176 39757247 -157438185 + ID4 SINE ID 1 73 -10 5 888 447 63 0 0 chr1 39757251 39757314 -157438118 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 888 310 21 43 0 chr1 39757823 39757870 -157437562 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 888 414 253 0 22 chr1 39758413 39758595 -157436837 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 888 231 88 0 0 chr1 39758829 39758863 -157436569 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 888 348 283 15 23 chr1 39760189 39760319 -157435113 - L1MD2 LINE L1 0 6633 6505 5 888 623 296 54 82 chr1 39760319 39760636 -157434796 - MER2 DNA MER2_type 0 345 38 5 888 314 267 28 0 chr1 39760748 39760969 -157434463 + (TG)n Simple_repeat Simple_repeat 1 227 0 5 888 242 231 0 0 chr1 39761048 39761126 -157434306 + L1MD LINE L1 5191 5268 -878 5 888 1142 305 176 19 chr1 39761176 39762026 -157433406 - L1MD2 LINE L1 -325 6425 5433 5 888 1021 116 0 0 chr1 39762026 39762173 -157433259 - B1_Mm SINE Alu 0 147 1 5 888 287 319 92 41 chr1 39762173 39762287 -157433145 - L1MD2 LINE L1 -1105 5432 5315 5 888 465 316 77 45 chr1 39762345 39762501 -157432931 + RSINE1 SINE B4 3 163 -2 5 888 225 317 204 9 chr1 39762518 39762744 -157432688 - L1MD2 LINE L1 -1277 5260 4991 5 888 706 276 92 36 chr1 39762868 39763173 -157432259 + MER68 LTR ERVL 24 345 -218 5 888 393 246 0 0 chr1 39763247 39763418 -157432014 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 888 291 255 0 0 chr1 39763431 39763580 -157431852 + (TG)n Simple_repeat Simple_repeat 2 150 0 5 888 321 231 37 0 chr1 39763583 39763691 -157431741 + (TCTG)n Simple_repeat Simple_repeat 1 112 0 5 888 751 240 23 95 chr1 39763691 39763747 -157431685 - B3 SINE B2 -11 205 163 5 888 489 17 0 0 chr1 39763747 39763805 -157431627 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 888 842 201 25 10 chr1 39763805 39763969 -157431463 - B3A SINE B2 -54 162 1 5 888 382 292 46 49 chr1 39764006 39764290 -157431142 - L1MD2 LINE L1 -3871 2666 2383 5 888 261 253 58 35 chr1 39764734 39764820 -157430612 - MLT1A0 LTR MaLR -277 88 1 5 888 273 57 0 0 chr1 39765364 39765399 -157430033 + (ATGGTG)n Simple_repeat Simple_repeat 1 35 0 5 888 381 276 77 77 chr1 39765984 39766192 -157429240 - MER2 DNA MER2_type -5 340 133 5 888 287 264 58 0 chr1 39767227 39767314 -157428118 + Tigger5 DNA MER2_type 93 184 -2222 5 888 1237 138 32 14 chr1 39768511 39768732 -157426700 + URR1B DNA MER1_type 1 225 0 5 888 254 227 13 0 chr1 39769426 39769501 -157425931 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 5 888 774 180 11 6 chr1 39769598 39769777 -157425655 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 5 888 595 133 0 0 chr1 39770453 39770543 -157424889 + B1_Mur3 SINE Alu 25 114 -35 5 888 259 234 26 13 chr1 39771438 39771516 -157423916 - BC1_Mm scRNA scRNA -63 89 11 5 888 573 275 70 0 chr1 39772628 39772799 -157422633 - B4A SINE B4 -103 189 7 5 888 234 219 0 0 chr1 39772856 39772920 -157422512 + GA-rich Low_complexity Low_complexity 3 66 0 5 888 2755 158 28 14 chr1 39773098 39773605 -157421827 - RLTR28 LTR ERVL -10 514 1 5 888 242 75 0 48 chr1 39773916 39773958 -157421474 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 888 3148 29 39 0 chr1 39774612 39774993 -157420439 + MTA_Mm LTR MaLR 1 396 0 5 888 22 0 0 0 chr1 39777845 39777867 -157417565 + GC_rich Low_complexity Low_complexity 1 22 0 5 888 258 105 0 0 chr1 39778748 39778786 -157416646 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 5 888 38980 39 3 3 chr1 39778786 39785031 -157410401 - L1Md_T LINE L1 -2 6583 242 5 888 1112 112 18 6 chr1 39785032 39785203 -157410229 - B2_Mm2 SINE B2 -21 174 2 5 888 549 319 94 45 chr1 39785226 39785607 -157409825 + L1MB5 LINE L1 5491 5890 -284 5 888 269 296 79 36 chr1 39785729 39785772 -157409660 - CYRA11_Mm Unknown Y-chromosome -225 392 249 5 888 533 137 116 0 chr1 39785772 39785867 -157409565 + URR1B DNA MER1_type 48 153 -72 5 888 515 225 0 0 chr1 39788243 39788332 -157407100 - PB1 SINE Alu -14 113 25 5 888 965 76 114 0 chr1 39789607 39789739 -157405693 - B1_Mus1 SINE Alu 0 148 2 5 888 2454 136 31 36 chr1 39790159 39790578 -157404854 - MTC LTR MaLR 0 421 5 5 888 253 302 129 23 chr1 39790600 39790732 -157404700 - MIRm SINE MIR 0 276 131 5 888 513 84 0 0 chr1 39792085 39792156 -157403276 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 6 888 413 208 62 0 chr1 39792161 39792257 -157403175 - PB1D7 SINE Alu -14 106 5 6 888 198 0 0 0 chr1 39792745 39792767 -157402665 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 888 334 345 113 28 chr1 39793834 39794286 -157401146 - L1MEg LINE L1 -4474 1534 1044 6 888 245 182 0 0 chr1 39794984 39795028 -157400404 - L1M5 LINE L1 -2228 3918 3875 6 888 791 194 70 27 chr1 39795059 39795252 -157400180 + ORR1D2 LTR MaLR 182 384 0 6 888 1312 240 88 18 chr1 39795425 39795764 -157399668 + MTE2b LTR MaLR 3 365 -14 6 888 29 70 0 0 chr1 39796108 39796165 -157399267 + AT_rich Low_complexity Low_complexity 1 57 0 6 888 267 239 22 33 chr1 39796254 39796345 -157399087 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 888 229 225 39 13 chr1 39796364 39796517 -157398915 + (TG)n Simple_repeat Simple_repeat 1 157 0 6 888 192 261 19 19 chr1 39796533 39796693 -157398739 + (TG)n Simple_repeat Simple_repeat 1 160 0 6 888 320 267 19 19 chr1 39796705 39796812 -157398620 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 888 565 264 12 42 chr1 39796821 39796987 -157398445 - RSINE1 SINE B4 -1 164 4 6 888 522 261 67 67 chr1 39796995 39797188 -157398244 + B3A SINE B2 1 193 -5 6 888 25 31 0 0 chr1 39797663 39797695 -157397737 + AT_rich Low_complexity Low_complexity 1 32 0 6 888 201 204 0 53 chr1 39798536 39798593 -157396839 + T-rich Low_complexity Low_complexity 2 55 0 6 888 451 253 33 0 chr1 39798605 39798696 -157396736 - PB1D7 SINE Alu -12 108 15 6 888 263 300 71 18 chr1 39798696 39798717 -157396715 - B4A SINE B4 -95 197 80 6 888 422 256 25 8 chr1 39798739 39798857 -157396575 - Lx9 LINE L1 -123 7521 7402 6 888 2570 177 141 7 chr1 39798859 39799405 -157396027 + Lx9 LINE L1 6816 7434 -210 6 888 1970 136 0 79 chr1 39799499 39799842 -157395590 - ORR1B1 LTR MaLR 0 394 79 6 888 527 289 92 99 chr1 39799986 39800205 -157395227 - MLT1B LTR MaLR -1 389 175 6 888 1215 28 21 0 chr1 39800205 39800350 -157395082 - B1_Mus1 SINE Alu 0 148 1 6 888 527 289 92 99 chr1 39800350 39800522 -157394910 - MLT1B LTR MaLR -216 174 1 6 888 846 223 47 16 chr1 39800596 39800787 -157394645 - B3A SINE B2 0 198 2 6 888 237 309 95 81 chr1 39800855 39801003 -157394429 - LTR37B LTR ERV1 -300 168 19 6 888 357 245 86 94 chr1 39801249 39801366 -157394066 + B3A SINE B2 83 198 0 6 888 626 231 11 81 chr1 39801939 39802113 -157393319 - B3A SINE B2 0 198 37 6 888 305 100 20 0 chr1 39802622 39802672 -157392760 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 888 851 183 6 0 chr1 39802722 39802897 -157392535 + (TA)n Simple_repeat Simple_repeat 2 177 0 6 888 1054 99 12 0 chr1 39803910 39804081 -157391351 + (TCCC)n Simple_repeat Simple_repeat 4 176 0 6 888 418 325 110 18 chr1 39804098 39804265 -157391167 - B3A SINE B2 -7 191 10 6 888 579 261 18 36 chr1 39804325 39804492 -157390940 - RSINE1 SINE B4 -1 164 1 6 888 26 30 0 0 chr1 39804570 39804603 -157390829 + AT_rich Low_complexity Low_complexity 1 33 0 6 888 939 130 29 7 chr1 39804617 39804756 -157390676 - B1_Mur4 SINE Alu -7 143 2 6 888 1405 65 27 0 chr1 39804769 39804953 -157390479 - B2_Mm1a SINE B2 -3 190 2 6 888 2409 225 81 20 chr1 39805073 39805712 -157389720 - Lx7 LINE L1 -202 7494 6817 6 888 260 348 18 48 chr1 39805872 39806038 -157389394 + RMER4A LTR ERVK 26 186 -280 6 888 476 248 29 22 chr1 39807161 39807297 -157388135 - MLT1A1 LTR MaLR 0 408 272 6 888 475 314 97 75 chr1 39808364 39808635 -157386797 + Charlie1b DNA MER1_type 1 274 -249 6 888 706 257 86 19 chr1 39808635 39808845 -157386587 - ID_B1 SINE B4 0 224 1 6 888 475 314 97 75 chr1 39808845 39808935 -157386497 + Charlie1b DNA MER1_type 275 370 -153 6 888 634 230 40 85 chr1 39808919 39809095 -157386337 - B3A SINE B2 -3 195 28 6 888 966 146 7 0 chr1 39809131 39809275 -157386157 + B1_Mus2 SINE Alu 2 146 -1 6 888 261 163 0 0 chr1 39809401 39809450 -157385982 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 888 570 136 48 10 chr1 39809457 39809561 -157385871 - B1F2 SINE Alu 0 149 42 6 888 204 0 0 156 chr1 39809564 39809660 -157385772 + (CTCTG)n Simple_repeat Simple_repeat 5 85 0 6 888 276 241 0 33 chr1 39809661 39809721 -157385711 - PB1D9 SINE Alu -61 59 2 6 888 1181 257 63 47 chr1 39809724 39809828 -157385604 + ORR1D2 LTR MaLR 42 148 -222 6 888 725 171 123 50 chr1 39809828 39810007 -157385425 - B2_Mm2 SINE B2 -3 192 1 6 888 1181 257 63 47 chr1 39810007 39810221 -157385211 + ORR1D2 LTR MaLR 149 365 -5 6 888 268 292 61 70 chr1 39810416 39810530 -157384902 - ORR1E LTR MaLR -17 362 250 6 888 284 327 59 0 chr1 39810543 39810644 -157384788 - ORR1E LTR MaLR -252 107 1 6 888 456 330 56 10 chr1 39810670 39810866 -157384566 - MER2 DNA MER2_type -55 290 86 6 888 353 310 40 57 chr1 39811021 39811227 -157384205 + ORR1E LTR MaLR 3 204 -166 6 888 286 225 165 35 chr1 39811280 39811395 -157384037 + ORR1E LTR MaLR 236 365 -14 6 888 712 220 29 70 chr1 39811795 39811966 -157383466 + RSINE1 SINE B4 2 165 0 6 888 522 172 0 0 chr1 39812003 39812102 -157383330 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 888 310 270 0 31 chr1 39812105 39812170 -157383262 - ID4_ SINE ID -13 70 8 6 888 183 235 0 0 chr1 39812181 39812215 -157383217 + L3 LINE CR1 4446 4479 -10 6 888 1414 29 16 0 chr1 39812519 39812906 -157382526 + (CTGTG)n Simple_repeat Simple_repeat 1 393 0 6 888 1370 24 30 0 chr1 39812931 39813773 -157381659 + (CTGTG)n Simple_repeat Simple_repeat 1 867 0 6 888 313 277 67 103 chr1 39814021 39814186 -157381246 + MER97c DNA MER1_type? 62 220 -870 6 888 532 308 218 12 chr1 39814223 39814558 -157380874 - MLT1E2 LTR MaLR 0 627 224 6 888 1167 233 94 7 chr1 39814614 39814891 -157380541 - Lx8 LINE L1 -97 7376 7076 6 888 1341 85 16 5 chr1 39815471 39815660 -157379772 - B2_Mm1a SINE B2 0 193 3 6 888 341 366 129 14 chr1 39815690 39816034 -157379398 + MLT1I LTR MaLR 28 411 0 6 888 22 0 0 0 chr1 39816672 39816694 -157378738 + GC_rich Low_complexity Low_complexity 1 22 0 6 888 235 246 31 0 chr1 39816920 39816985 -157378447 + CT-rich Low_complexity Low_complexity 2 68 0 6 888 276 280 18 83 chr1 39817139 39817248 -157378184 + MER2B DNA MER2_type 162 263 -73 6 888 318 106 0 0 chr1 39817639 39817686 -157377746 + (T)n Simple_repeat Simple_repeat 1 47 0 6 888 1199 61 0 0 chr1 39817686 39817833 -157377599 - B1_Mus1 SINE Alu 0 148 2 6 888 21 0 0 0 chr1 39817854 39817875 -157377557 + AT_rich Low_complexity Low_complexity 1 21 0 6 888 326 159 38 16 chr1 39819237 39819304 -157376128 + PB1D10 SINE Alu 27 97 -52 6 888 2344 281 155 22 chr1 39820108 39820208 -157375224 - Lx8 LINE L1 -6 7467 7342 6 888 236 53 26 0 chr1 39820208 39820246 -157375186 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 888 871 122 23 0 chr1 39820247 39820378 -157375054 - B1_Mus2 SINE Alu -12 135 2 6 888 2344 281 155 22 chr1 39820378 39821295 -157374137 - Lx8 LINE L1 -132 7341 6314 6 888 976 257 38 45 chr1 39821574 39821839 -157373593 + B4 SINE B4 2 264 -28 6 888 327 49 0 0 chr1 39821844 39821885 -157373547 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 888 270 229 153 48 chr1 39821963 39822087 -157373345 - MLT1A1 LTR MaLR -4 404 268 6 888 330 26 0 0 chr1 39823023 39823062 -157372370 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 888 245 232 67 79 chr1 39823216 39823293 -157372139 + PB1D10 SINE Alu 36 111 -38 6 888 277 121 30 17 chr1 39823293 39823349 -157372083 + B3A SINE B2 1 55 -161 6 888 315 71 0 0 chr1 39823435 39823477 -157371955 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 888 2788 170 134 14 chr1 39823919 39824782 -157370650 + MurERV4-int LTR ERVK 1159 2125 -3135 6 888 660 126 153 0 chr1 39824771 39824882 -157370550 + MurERV4-int LTR ERVK 5133 5260 0 6 888 2827 115 47 5 chr1 39824882 39825329 -157370103 + RMER4A LTR ERVK 1 466 0 6 888 412 280 118 8 chr1 39825933 39826052 -157369380 - MER2 DNA MER2_type -3 342 211 6 888 1695 26 0 0 chr1 39826154 39826346 -157369086 - B2_Mm1a SINE B2 0 193 2 6 888 796 138 62 48 chr1 39826349 39826494 -157368938 - B1_Mur2 SINE Alu 0 149 3 6 888 676 290 52 81 chr1 39826507 39826717 -157368715 - B3 SINE B2 -12 204 1 6 888 370 313 0 0 chr1 39826917 39827000 -157368432 + RSINE1 SINE B4 83 165 0 6 888 183 42 0 0 chr1 39827271 39827295 -157368137 + (CAAGA)n Simple_repeat Simple_repeat 2 25 0 6 888 3040 83 5 2 chr1 39827831 39828230 -157367202 - MTB LTR MaLR 0 400 1 6 888 2039 78 13 66 chr1 39828388 39828690 -157366742 - ORR1A2 LTR MaLR -41 286 1 6 888 780 283 122 45 chr1 39829982 39830293 -157365139 + MER2 DNA MER2_type 11 345 0 6 888 219 69 0 0 chr1 39830865 39830894 -157364538 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 6 888 351 0 0 0 chr1 39831243 39831282 -157364150 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 888 44 20 0 0 chr1 39831967 39832018 -157363414 + AT_rich Low_complexity Low_complexity 1 51 0 6 888 240 254 109 42 chr1 39832254 39832373 -157363059 - B4A SINE B4 -163 129 3 6 888 475 153 68 0 chr1 39832542 39832779 -157362653 + (TG)n Simple_repeat Simple_repeat 1 253 0 6 888 417 314 118 20 chr1 39832985 39833180 -157362252 - MER2 DNA MER2_type -103 242 29 6 888 2047 141 141 21 chr1 39833593 39833969 -157361463 + MTC LTR MaLR 1 421 0 6 888 347 238 19 19 chr1 39834185 39834292 -157361140 + ORR1D2 LTR MaLR 20 126 -244 6 888 222 37 0 0 chr1 39834572 39834599 -157360833 + (T)n Simple_repeat Simple_repeat 1 27 0 6 888 622 249 176 41 chr1 39834707 39835061 -157360371 + MTD LTR MaLR 18 419 0 6 888 472 200 27 7 chr1 39835151 39835297 -157360135 + CT-rich Low_complexity Low_complexity 1 149 0 6 888 228 67 0 0 chr1 39835297 39835327 -157360105 + (TTA)n Simple_repeat Simple_repeat 3 32 0 6 888 305 293 74 39 chr1 39835327 39835583 -157359849 - L1MEc LINE L1 -773 5546 5282 6 888 311 264 23 76 chr1 39837071 39837202 -157358230 - L1MB7 LINE L1 -245 5939 5816 6 888 216 0 0 0 chr1 39837298 39837322 -157358110 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 888 406 305 190 13 chr1 39837356 39837582 -157357850 - B4A SINE B4 -11 281 16 6 888 631 182 14 2 chr1 39837635 39837768 -157357664 - B1_Mus2 SINE Alu -9 140 1 6 888 1230 302 97 59 chr1 39837843 39839093 -157356339 - L1MEc LINE L1 -2173 4146 2850 6 888 180 176 0 0 chr1 39840155 39840189 -157355243 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 7 888 213 224 0 0 chr1 39840266 39840324 -157355108 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 888 301 204 0 0 chr1 39840324 39840378 -157355054 - B4A SINE B4 0 292 239 7 888 493 328 133 49 chr1 39840641 39841189 -157354243 + MER21B LTR ERV1 149 742 -121 7 888 336 291 56 56 chr1 39842075 39842217 -157353215 + RSINE1 SINE B4 23 164 -1 7 888 261 330 182 0 chr1 39842325 39842534 -157352898 - L1MEc LINE L1 -4300 2100 1854 6 888 465 279 82 317 chr1 39842944 39842987 -157352445 - B3 SINE B2 -4 191 139 7 888 258 32 0 0 chr1 39842987 39843018 -157352414 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 888 465 283 69 0 chr1 39843018 39843157 -157352275 - B3 SINE B2 -66 150 2 7 888 337 305 86 28 chr1 39843260 39843587 -157351845 - L1MEc LINE L1 -5224 1176 831 6 888 946 275 63 15 chr1 39843588 39843894 -157351538 - MTE2b LTR MaLR 0 370 58 7 888 1325 299 89 19 chr1 39843953 39844423 -157351009 - MTE-int LTR MaLR -592 988 486 7 888 812 236 67 0 chr1 39844518 39844726 -157350706 - MTEa LTR MaLR 0 379 158 7 889 752 247 16 11 chr1 39846245 39846433 -157348999 - B3 SINE B2 -1 215 27 7 889 24 85 0 0 chr1 39846477 39846536 -157348896 + AT_rich Low_complexity Low_complexity 1 59 0 7 889 392 291 47 0 chr1 39846728 39846855 -157348577 - Lx7 LINE L1 -375 7321 7189 7 889 213 132 0 0 chr1 39846881 39846919 -157348513 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 7 889 704 212 112 0 chr1 39846920 39847091 -157348341 - Lx6 LINE L1 -221 7239 7096 7 889 4625 228 100 67 chr1 39847275 39847341 -157348091 - L1_Mur3 LINE L1 -672 5208 5150 7 889 2413 99 9 0 chr1 39847341 39847663 -157347769 + ORR1A2 LTR MaLR 3 327 0 7 889 4625 228 100 67 chr1 39847663 39849069 -157346363 - L1_Mur3 LINE L1 -731 5149 3688 7 889 5918 197 128 9 chr1 39849069 39849239 -157346193 + Lx7 LINE L1 4115 4298 -1582 7 889 3964 21 32 8 chr1 39849239 39849709 -157345723 - L1Md_F2 LINE L1 0 6582 6102 7 889 5918 197 128 9 chr1 39849709 39849991 -157345441 + Lx7 LINE L1 4299 4624 -1256 7 889 431 95 14 0 chr1 39849991 39850065 -157345367 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 889 6986 201 113 17 chr1 39850065 39851423 -157344009 + Lx7 LINE L1 4625 6154 -1542 7 889 2359 104 3 0 chr1 39851423 39851749 -157343683 + ORR1A2 LTR MaLR 1 327 0 7 889 6986 209 79 35 chr1 39851749 39852946 -157342486 + Lx7 LINE L1 6155 7366 -330 7 889 308 273 67 41 chr1 39852917 39852958 -157342474 + Lx7 LINE L1 7481 7528 -168 7 889 3643 28 28 2 chr1 39852958 39853383 -157342049 - RLTR10C LTR ERVK 0 436 1 7 889 308 273 67 41 chr1 39853383 39853477 -157341955 + Lx7 LINE L1 7529 7618 -78 7 889 2871 130 182 21 chr1 39853477 39854003 -157341429 - RMER19C LTR ERVK 0 611 1 7 889 308 278 48 48 chr1 39854003 39854092 -157341340 + Lx7 LINE L1 7619 7679 -17 7 889 415 250 167 86 chr1 39854096 39854341 -157341091 - L1_Mur1 LINE L1 -2186 3700 3436 7 889 1545 166 23 37 chr1 39854347 39854612 -157340820 + RLTR14-int LTR ERV1 2293 2561 -2756 7 889 4291 43 14 4 chr1 39854612 39855126 -157340306 - MURVY-LTR LTR ERV1 0 519 1 7 889 1545 166 23 37 chr1 39855126 39855160 -157340272 + RLTR14-int LTR ERV1 2562 2588 -2729 7 889 591 308 4 17 chr1 39855160 39855391 -157340041 - L1_Mur1 LINE L1 -4135 1751 1524 7 889 213 250 0 16 chr1 39855761 39855822 -157339610 - L2c LINE L2 -1 3386 3327 7 889 227 291 49 56 chr1 39856476 39856544 -157338888 - L1MA10 LINE L1 0 6334 6271 7 889 838 301 70 24 chr1 39856544 39856874 -157338558 + MER2 DNA MER2_type 1 345 0 7 889 227 291 49 56 chr1 39856874 39856947 -157338485 - L1MA10 LINE L1 -64 6270 6194 7 889 882 80 37 0 chr1 39857025 39857188 -157338244 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 7 889 893 92 40 0 chr1 39857201 39857374 -157338058 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 889 254 256 39 0 chr1 39858825 39858903 -157336529 - MLT1H LTR MaLR -405 144 64 7 889 228 100 0 0 chr1 39858955 39858995 -157336437 + (TGGGGG)n Simple_repeat Simple_repeat 1 40 0 7 889 6931 7 0 0 chr1 39859086 39859842 -157335590 + L1Md_A LINE L1 5827 6582 0 7 889 693 117 0 0 chr1 39860272 39860400 -157335032 + (TC)n Simple_repeat Simple_repeat 1 128 0 7 889 607 263 64 77 chr1 39860472 39860568 -157334864 - MER2 DNA MER2_type -109 236 139 7 889 1056 169 118 15 chr1 39860568 39860772 -157334660 + URR1B DNA MER1_type 1 225 0 7 889 607 263 64 77 chr1 39860772 39860800 -157334632 - MER2 DNA MER2_type -207 138 120 7 889 1158 51 0 0 chr1 39860800 39860937 -157334495 + B1_Mus2 SINE Alu 2 138 -9 7 889 260 27 27 0 chr1 39860937 39860974 -157334458 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 889 607 263 64 77 chr1 39860974 39861082 -157334350 - MER2 DNA MER2_type -226 119 6 7 889 192 40 0 0 chr1 39861249 39861274 -157334158 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 889 279 0 0 0 chr1 39861274 39861304 -157334128 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 889 516 275 38 0 chr1 39861305 39861465 -157333967 - B3A SINE B2 -17 181 16 7 889 1281 219 159 99 chr1 39862734 39862772 -157332660 - MT2A LTR ERVL 0 533 494 7 889 360 0 0 0 chr1 39862772 39862812 -157332620 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 7 889 1281 219 159 99 chr1 39862812 39863276 -157332156 - MT2A LTR ERVL -40 493 1 7 889 215 234 44 59 chr1 39863473 39863541 -157331891 + B3A SINE B2 16 82 -116 7 889 310 287 94 17 chr1 39863507 39863624 -157331808 + B4A SINE B4 49 174 -118 7 889 332 207 107 43 chr1 39864899 39864966 -157330466 - RMER17C LTR ERVK -135 275 206 7 889 824 55 0 9 chr1 39864966 39865077 -157330355 + (GGAGA)n Simple_repeat Simple_repeat 4 113 0 7 889 332 207 107 43 chr1 39865077 39865196 -157330236 - RMER17C LTR ERVK -205 205 77 7 889 450 0 0 0 chr1 39865865 39865915 -157329517 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 889 229 182 0 0 chr1 39866296 39866340 -157329092 + C-rich Low_complexity Low_complexity 1 44 0 7 889 384 22 0 0 chr1 39866433 39866478 -157328954 + (CAT)n Simple_repeat Simple_repeat 1 45 0 7 889 5302 107 25 27 chr1 39866807 39867282 -157328150 + Lx2 LINE L1 6172 6660 -337 7 889 3056 37 3 235 chr1 39867282 39867849 -157327583 + RLTR10C LTR ERVK 1 436 0 7 889 5302 107 25 27 chr1 39867849 39868200 -157327232 + Lx2 LINE L1 6661 6997 0 7 889 273 310 165 45 chr1 39868425 39868668 -157326764 + B4 SINE B4 2 273 -19 7 889 21 0 0 0 chr1 39868781 39868802 -157326630 + AT_rich Low_complexity Low_complexity 1 21 0 7 889 933 130 29 0 chr1 39868924 39869062 -157326370 - B1_Mur4 SINE Alu -8 142 1 7 889 325 239 68 0 chr1 39869674 39869762 -157325670 - PB1D7 SINE Alu -8 112 19 7 889 27 0 0 0 chr1 39870393 39870420 -157325012 + AT_rich Low_complexity Low_complexity 1 27 0 7 889 225 321 28 0 chr1 39870668 39870774 -157324658 + Charlie2b DNA MER1_type 2377 2485 -297 7 889 248 259 9 0 chr1 39870915 39871023 -157324409 + (TG)n Simple_repeat Simple_repeat 1 109 0 7 889 198 295 0 0 chr1 39871079 39871184 -157324248 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 889 230 333 235 0 chr1 39871368 39871449 -157323983 - B4A SINE B4 -184 108 9 7 889 25 75 0 0 chr1 39871493 39871546 -157323886 + AT_rich Low_complexity Low_complexity 1 53 0 7 889 45 34 0 0 chr1 39871896 39871955 -157323477 + AT_rich Low_complexity Low_complexity 1 59 0 7 889 288 0 0 0 chr1 39872026 39872058 -157323374 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 889 180 0 0 0 chr1 39872058 39872077 -157323355 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 889 29 90 0 0 chr1 39872077 39872155 -157323277 + AT_rich Low_complexity Low_complexity 1 78 0 7 889 4231 97 32 15 chr1 39872597 39873309 -157322123 + RMER6A LTR ERVK 33 756 0 7 889 346 295 112 24 chr1 39873876 39874081 -157321351 - ID_B1 SINE B4 -1 223 1 7 889 593 275 65 66 chr1 39874152 39874619 -157320813 - L1M3 LINE L1 -2409 3737 3290 7 889 261 0 0 0 chr1 39874621 39874650 -157320782 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 889 296 270 0 0 chr1 39874668 39874742 -157320690 - RSINE1 SINE B4 -47 118 45 7 889 564 248 59 51 chr1 39874757 39874988 -157320444 - B4A SINE B4 -42 250 1 7 889 301 272 24 14 chr1 39875056 39875162 -157320270 + ORR1D2 LTR MaLR 279 396 -12 7 889 285 51 0 0 chr1 39875315 39875354 -157320078 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 889 252 143 0 0 chr1 39875614 39875656 -157319776 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 7 889 1083 90 12 12 chr1 39877166 39877335 -157318097 + B2_Mm2 SINE B2 2 170 -25 7 889 198 91 0 0 chr1 39877883 39877916 -157317516 + (A)n Simple_repeat Simple_repeat 1 33 0 7 889 3217 31 34 0 chr1 39878250 39878633 -157316799 - MTA_Mm LTR MaLR 0 396 1 7 889 329 225 102 109 chr1 39878867 39879059 -157316373 - MTE2a LTR MaLR -199 180 18 7 889 1630 52 0 0 chr1 39879488 39879680 -157315752 + B2_Mm1a SINE B2 2 193 0 7 889 300 27 0 0 chr1 39879925 39879962 -157315470 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 889 225 302 74 41 chr1 39880001 39880122 -157315310 + MLT1A1 LTR MaLR 268 392 -16 7 889 971 257 120 21 chr1 39880691 39881017 -157314415 + MTD LTR MaLR 7 364 -55 7 889 335 349 17 51 chr1 39881323 39881498 -157313934 - MT2A LTR ERVL -173 360 192 7 889 824 135 0 7 chr1 39881551 39881700 -157313732 + (TG)n Simple_repeat Simple_repeat 2 149 0 7 889 307 311 134 0 chr1 39881705 39881824 -157313608 - MTEa LTR MaLR -244 135 1 7 889 617 315 54 62 chr1 39882385 39882757 -157312675 - MT2A LTR ERVL -105 428 60 7 889 617 244 130 14 chr1 39883655 39883863 -157311569 + L1MB4 LINE L1 5519 5750 -430 7 889 583 239 6 11 chr1 39883918 39884096 -157311336 + (TATG)n Simple_repeat Simple_repeat 3 179 0 7 889 739 191 11 17 chr1 39884129 39884310 -157311122 + (TATG)n Simple_repeat Simple_repeat 1 180 0 7 889 198 191 0 0 chr1 39884330 39884372 -157311060 + (TATG)n Simple_repeat Simple_repeat 2 43 0 7 889 578 298 170 44 chr1 39884377 39884766 -157310666 - MLT2B1 LTR ERVL -82 438 1 7 889 329 334 87 39 chr1 39884786 39885097 -157310335 + L1MB4 LINE L1 5788 6113 -61 7 889 21 0 0 0 chr1 39885124 39885145 -157310287 + AT_rich Low_complexity Low_complexity 1 21 0 7 889 445 286 21 0 chr1 39885711 39885851 -157309581 - L1M5 LINE L1 -2010 4136 3994 7 889 201 396 0 0 chr1 39886561 39886657 -157308775 - MIR SINE MIR -133 129 34 7 889 377 223 21 57 chr1 39887215 39887359 -157308073 + MLT1A1 LTR MaLR 234 408 0 7 889 198 319 62 52 chr1 39888566 39888662 -157306770 - MIRc SINE MIR -120 148 52 7 889 270 183 16 32 chr1 39889252 39889314 -157306118 + B2_Mm2 SINE B2 28 88 -107 7 889 226 303 55 41 chr1 39890264 39890362 -157305070 - MIRm SINE MIR -84 184 76 7 889 693 247 306 11 chr1 39890389 39890673 -157304759 - MTD LTR MaLR -20 399 32 7 889 306 0 0 0 chr1 39892402 39892436 -157302996 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 889 534 296 97 9 chr1 39892788 39893085 -157302347 + MLT1B LTR MaLR 29 361 -29 7 889 186 43 0 0 chr1 39893161 39893184 -157302248 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 7 889 514 306 84 72 chr1 39893270 39893605 -157301827 - ORR1E LTR MaLR -20 339 1 8 889 483 18 0 0 chr1 39893710 39893766 -157301666 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 889 361 311 107 36 chr1 39894277 39894417 -157301015 - MLT1K LTR MaLR -285 310 161 8 889 1083 8 0 8 chr1 39894449 39894578 -157300854 + B1_Mm SINE Alu 20 147 0 8 889 546 143 0 0 chr1 39894694 39894785 -157300647 + (GGA)n Simple_repeat Simple_repeat 3 93 0 8 889 633 211 23 0 chr1 39894824 39894952 -157300480 - B1_Mur3 SINE Alu -8 141 11 8 889 264 202 73 37 chr1 39894879 39894961 -157300471 - B4A SINE B4 -120 172 88 8 889 715 287 138 36 chr1 39895420 39895839 -157299593 - L1ME3A LINE L1 -27 6146 5685 8 889 243 0 0 0 chr1 39896031 39896058 -157299374 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 8 889 775 165 219 52 chr1 39896420 39896612 -157298820 + URR1B DNA MER1_type 2 225 0 8 889 232 317 72 63 chr1 39897070 39897181 -157298251 - ORR1E LTR MaLR -221 138 27 8 889 585 0 0 0 chr1 39897292 39897357 -157298075 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 8 889 672 128 0 0 chr1 39898103 39898205 -157297227 + B1_Mur4 SINE Alu 42 143 -7 8 889 336 143 0 0 chr1 39898207 39898263 -157297169 + (GGA)n Simple_repeat Simple_repeat 3 58 0 8 889 437 300 56 65 chr1 39898342 39898556 -157296876 - MIR SINE MIR -43 219 8 8 889 288 333 0 0 chr1 39898672 39898741 -157296691 - RSINE1 SINE B4 -95 70 2 8 889 399 21 0 0 chr1 39899130 39899178 -157296254 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 889 207 88 0 0 chr1 39899751 39899785 -157295647 + (T)n Simple_repeat Simple_repeat 1 34 0 8 889 1259 54 0 0 chr1 39899788 39899935 -157295497 - B1_Mus1 SINE Alu 0 148 2 8 889 576 274 132 35 chr1 39900177 39900434 -157294998 + B4A SINE B4 3 284 -8 8 889 180 152 0 0 chr1 39900462 39900495 -157294937 + (CATG)n Simple_repeat Simple_repeat 1 33 0 8 889 276 153 30 10 chr1 39900540 39900639 -157294793 + (CAGA)n Simple_repeat Simple_repeat 2 102 0 8 889 355 319 0 41 chr1 39901101 39901222 -157294210 + PB1D10 SINE Alu 1 116 -1 8 889 650 220 38 8 chr1 39901642 39901775 -157293657 + B3A SINE B2 1 137 -61 8 889 414 0 0 0 chr1 39901784 39901830 -157293602 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 889 184 292 43 58 chr1 39902159 39902228 -157293204 + L2b LINE L2 3297 3364 -11 8 889 624 224 13 26 chr1 39902258 39902409 -157293023 - B1_Mur1 SINE Alu 0 149 1 8 889 262 225 12 12 chr1 39903522 39903603 -157291829 + CT-rich Low_complexity Low_complexity 3 83 0 8 889 1260 163 5 36 chr1 39904300 39904523 -157290909 + URR1A DNA MER1_type 1 216 -10 8 889 243 261 111 51 chr1 39904696 39904813 -157290619 - MLT1B LTR MaLR -26 382 259 8 889 319 259 68 51 chr1 39904952 39905070 -157290362 - ORR1E LTR MaLR -239 120 1 8 889 823 280 50 12 chr1 39905070 39905312 -157290120 - MLT1B LTR MaLR -118 272 22 8 889 287 262 16 0 chr1 39906642 39906703 -157288729 - B4A SINE B4 -14 278 217 8 889 399 340 0 0 chr1 39906719 39906822 -157288610 - RSINE1 SINE B4 -15 150 48 8 889 1471 235 73 72 chr1 39907101 39907673 -157287759 - RLTR20B3 LTR ERVK 0 577 5 8 889 229 239 0 0 chr1 39908591 39908637 -157286795 + tRNA-Ala-GCY_ tRNA tRNA 1 46 -29 8 889 1786 222 94 0 chr1 39908778 39909160 -157286272 - MTD LTR MaLR -1 418 1 8 889 301 279 81 11 chr1 39909790 39909877 -157285555 + PB1D10 SINE Alu 3 95 -22 8 889 444 19 0 0 chr1 39910378 39910431 -157285001 + (TAA)n Simple_repeat Simple_repeat 2 54 0 8 889 660 259 21 60 chr1 39910616 39910818 -157284614 + B3A SINE B2 19 190 -5 8 889 232 198 58 58 chr1 39910847 39910933 -157284499 - Charlie5 DNA MER1_type -299 2325 2240 8 889 234 0 0 0 chr1 39912051 39912077 -157283355 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 889 420 20 0 0 chr1 39912077 39912125 -157283307 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 889 713 158 2 7 chr1 39912353 39912476 -157282956 - B1_Mus1 SINE Alu -2 118 2 8 889 1086 140 0 0 chr1 39912492 39912671 -157282761 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 889 450 53 0 0 chr1 39912688 39912745 -157282687 + (GAAAA)n Simple_repeat Simple_repeat 5 61 0 8 889 672 323 52 19 chr1 39912868 39913139 -157282293 + B4A SINE B4 12 291 -1 8 889 1228 54 0 0 chr1 39913339 39913487 -157281945 - B1_Mus1 SINE Alu 0 148 1 8 889 254 326 31 0 chr1 39914536 39914634 -157280798 - L2c LINE L2 -15 3372 3272 8 889 357 24 0 0 chr1 39915836 39915878 -157279554 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 8 889 684 36 0 0 chr1 39915878 39915961 -157279471 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 8 889 194 296 37 0 chr1 39916273 39916327 -157279105 - MIR SINE MIR -68 140 85 8 889 588 332 99 26 chr1 39916925 39917149 -157278283 + B4A SINE B4 28 269 -23 8 889 486 0 0 0 chr1 39917149 39917203 -157278229 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 889 355 333 0 72 chr1 39917710 39917862 -157277570 - MIRc SINE MIR -125 143 3 8 889 371 194 9 27 chr1 39918262 39918373 -157277059 + CT-rich Low_complexity Low_complexity 3 111 0 8 889 644 283 28 17 chr1 39918912 39919088 -157276344 + B3A SINE B2 1 178 -20 8 889 360 268 62 50 chr1 39919119 39919280 -157276152 + RSINE1 SINE B4 3 165 0 8 889 232 263 51 38 chr1 39919497 39919576 -157275856 + MLT1A1 LTR MaLR 322 401 -7 8 889 286 271 78 63 chr1 39920156 39920298 -157275134 - L1ME2 LINE L1 0 6164 6021 8 889 242 324 14 0 chr1 39920745 39920819 -157274613 + PB1 SINE Alu 20 94 -33 8 889 1359 67 0 0 chr1 39920824 39921003 -157274429 + (GGGAGA)n Simple_repeat Simple_repeat 1 179 0 8 889 318 206 0 0 chr1 39921003 39921071 -157274361 + GA-rich Low_complexity Low_complexity 3 70 0 8 889 910 245 0 5 chr1 39921126 39921335 -157274097 + B3 SINE B2 5 212 -4 8 889 269 233 81 72 chr1 39922025 39922136 -157273296 - PB1D10 SINE Alu -1 116 5 8 889 575 220 48 41 chr1 39922490 39922637 -157272795 + B1F SINE Alu 1 148 -1 8 889 718 173 204 0 chr1 39922907 39923069 -157272363 + B3 SINE B2 3 197 -19 8 889 5171 137 28 49 chr1 39923069 39924033 -157271399 - RMER17B LTR ERVK 0 958 15 8 889 443 265 109 84 chr1 39924084 39924368 -157271064 + B4A SINE B4 2 292 0 8 889 468 143 0 0 chr1 39924418 39924502 -157270930 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 889 353 154 15 0 chr1 39924514 39924579 -157270853 + HAL1-3A_ME LINE L1 1975 2040 -818 8 889 352 94 18 54 chr1 39924621 39924677 -157270755 + HAL1-3A_ME LINE L1 1976 2029 -829 8 889 399 309 51 32 chr1 39925968 39926125 -157269307 + MLT1D LTR MaLR 341 500 -5 8 889 345 328 49 0 chr1 39926261 39926383 -157269049 - MER3 DNA MER1_type -79 130 3 8 889 390 302 9 0 chr1 39926422 39926528 -157268904 + RSINE1 SINE B4 38 144 -21 8 889 302 349 104 14 chr1 39927021 39927233 -157268199 - L1MEe LINE L1 -1415 4731 4501 8 889 536 173 45 9 chr1 39927859 39927970 -157267462 - PB1D9 SINE Alu -1 119 5 8 889 276 291 105 55 chr1 39928145 39928345 -157267087 + L1MB4 LINE L1 5876 6085 -95 8 889 1086 121 0 0 chr1 39928390 39928649 -157266783 + (TG)n Simple_repeat Simple_repeat 1 259 0 8 889 682 236 68 10 chr1 39928673 39928878 -157266554 - B4 SINE B4 -73 219 3 8 889 614 304 0 0 chr1 39929204 39929339 -157266093 - RSINE1 SINE B4 -28 137 3 8 889 241 301 0 0 chr1 39929385 39929458 -157265974 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 8 889 256 287 70 0 chr1 39929659 39929774 -157265658 - L1MEe LINE L1 -3716 2450 2328 8 889 441 323 182 27 chr1 39929814 39930227 -157265205 - HAL1 LINE L1 -30 2477 2001 8 889 435 268 176 21 chr1 39930292 39930666 -157264766 - HAL1 LINE L1 -702 1805 1374 8 889 248 184 0 75 chr1 39930704 39930810 -157264622 + (TTGG)n Simple_repeat Simple_repeat 2 99 0 8 889 282 116 0 0 chr1 39930892 39930935 -157264497 + (T)n Simple_repeat Simple_repeat 1 43 0 8 889 1179 75 0 0 chr1 39930935 39931082 -157264350 - B1_Mus1 SINE Alu 0 148 2 8 889 269 258 30 0 chr1 39931301 39931367 -157264065 - ID4_ SINE ID -15 68 1 8 889 1604 205 62 87 chr1 39931376 39931792 -157263640 - MTD LTR MaLR 0 419 14 8 889 400 393 70 55 chr1 39931937 39932352 -157263080 - HAL1 LINE L1 -1593 914 494 8 889 295 261 143 52 chr1 39932638 39932868 -157262564 - RMER12 LTR ERVK -334 988 738 8 889 736 201 36 42 chr1 39933034 39933206 -157262226 - B3 SINE B2 -9 186 8 8 889 246 128 0 0 chr1 39933394 39933433 -157261999 + (T)n Simple_repeat Simple_repeat 1 39 0 8 889 1217 55 0 0 chr1 39933433 39933579 -157261853 - B1_Mus2 SINE Alu 0 147 2 8 889 210 128 0 0 chr1 39934041 39934080 -157261352 + (G)n Simple_repeat Simple_repeat 1 39 0 8 889 2607 151 22 7 chr1 39934085 39934499 -157260933 - MTC LTR MaLR 0 421 2 8 889 1037 264 169 7 chr1 39934813 39935244 -157260188 + L1MA9 LINE L1 5413 5913 -399 8 889 362 100 0 16 chr1 39935426 39935487 -157259945 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 889 667 155 19 49 chr1 39935476 39935852 -157259580 + (TATATG)n Simple_repeat Simple_repeat 1 364 0 8 889 203 88 0 29 chr1 39935867 39935902 -157259530 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 8 889 875 156 0 0 chr1 39936153 39936281 -157259151 + B1_Mur2 SINE Alu 14 141 -8 8 889 189 0 0 0 chr1 39936283 39936304 -157259128 + (CAGAA)n Simple_repeat Simple_repeat 4 24 0 8 889 900 215 34 14 chr1 39936314 39936522 -157258910 + B3 SINE B2 1 212 -4 8 889 191 316 59 30 chr1 39936950 39937051 -157258381 + MIR SINE MIR 126 229 -33 8 889 342 0 0 0 chr1 39937418 39937456 -157257976 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 9 889 832 150 0 0 chr1 39937457 39937584 -157257848 - B1_Mus1 SINE Alu -17 131 5 9 889 276 30 0 0 chr1 39937641 39937674 -157257758 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 889 4541 214 72 20 chr1 39937677 39938811 -157256621 + L1_Mur3 LINE L1 4637 5829 -51 9 889 725 177 92 0 chr1 39938834 39938964 -157256468 - B1_Mur2 SINE Alu -6 143 2 9 889 259 296 12 0 chr1 39939317 39939398 -157256034 - ID4_ SINE ID 0 83 2 9 889 1357 224 130 12 chr1 39939604 39939943 -157255489 + MTD LTR MaLR 41 419 0 9 889 36 91 0 0 chr1 39940031 39940130 -157255302 + AT_rich Low_complexity Low_complexity 1 99 0 9 889 2149 120 46 20 chr1 39940135 39940591 -157254841 + ORR1A3 LTR MaLR 3 378 -6 9 889 360 225 23 15 chr1 39940591 39940777 -157254655 + (TA)n Simple_repeat Simple_repeat 1 187 0 9 889 1519 202 10 94 chr1 39940906 39941311 -157254121 - ORR1D1 LTR MaLR 0 374 4 9 889 540 259 41 14 chr1 39942119 39942264 -157253168 + B1F2 SINE Alu 1 149 0 9 889 233 372 26 52 chr1 39942244 39942397 -157253035 + RMER12 LTR ERVK 694 842 -480 9 889 291 224 184 0 chr1 39942875 39942951 -157252481 - Tigger7 DNA MER2_type -26 2465 2376 9 889 797 159 4 22 chr1 39942954 39943437 -157251995 + (TG)n Simple_repeat Simple_repeat 1 474 0 9 889 531 330 67 43 chr1 39943442 39943651 -157251781 - Tigger7 DNA MER2_type -2269 222 9 9 889 666 190 71 28 chr1 39944093 39944234 -157251198 + RSINE1 SINE B4 19 165 0 9 889 234 397 31 23 chr1 39944351 39944480 -157250952 + MIRb SINE MIR 123 252 -16 9 889 624 288 126 44 chr1 39944555 39944803 -157250629 - MER2 DNA MER2_type -8 337 64 9 889 2580 134 7 10 chr1 39944803 39945211 -157250221 + MTB_Mm LTR MaLR 1 407 0 9 889 624 288 126 44 chr1 39945211 39945256 -157250176 - MER2 DNA MER2_type -282 63 20 9 889 382 185 306 0 chr1 39946249 39946408 -157249024 + B3 SINE B2 4 211 -5 9 889 255 103 0 0 chr1 39946663 39946702 -157248730 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 9 889 579 287 78 82 chr1 39946745 39947130 -157248302 + MLT1C LTR MaLR 3 388 -2 9 889 1167 68 0 0 chr1 39947328 39947474 -157247958 - B1_Mus2 SINE Alu 0 147 2 9 889 1142 289 85 14 chr1 39947736 39948090 -157247342 + MTEa LTR MaLR 1 379 0 9 889 232 333 37 44 chr1 39948141 39948276 -157247156 - MLT1A LTR MaLR -3 371 238 9 889 583 308 192 13 chr1 39948374 39948769 -157246663 - Lx8 LINE L1 -1 7472 7007 9 889 327 113 0 0 chr1 39948879 39948932 -157246500 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 9 889 673 180 7 83 chr1 39948944 39949089 -157246343 - B1_Mur1 SINE Alu -15 134 1 9 889 253 291 64 102 chr1 39949442 39949510 -157245922 + MT2B2 LTR ERVL 105 254 -329 9 889 415 206 18 0 chr1 39949510 39949598 -157245834 + PB1D9 SINE Alu 16 107 -42 9 889 215 384 0 25 chr1 39950061 39950224 -157245208 + C-rich Low_complexity Low_complexity 2 160 0 9 889 234 0 0 0 chr1 39950910 39950936 -157244496 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 889 837 285 72 36 chr1 39950945 39951222 -157244210 - B4A SINE B4 0 292 6 9 889 476 274 10 0 chr1 39951520 39951622 -157243810 + PB1D10 SINE Alu 7 109 -8 9 889 329 221 38 25 chr1 39952158 39952237 -157243195 + MLT1A1 LTR MaLR 291 370 -38 9 889 404 284 25 18 chr1 39952323 39952467 -157242965 + LTR16E1 LTR ERVL 313 537 -1 9 889 276 238 45 54 chr1 39952690 39952801 -157242631 - PB1D7 SINE Alu -6 114 5 9 889 303 247 78 11 chr1 39953536 39953626 -157241806 + MLT1A1 LTR MaLR 1 96 -312 9 889 237 288 122 61 chr1 39953669 39953898 -157241534 + ORR1E LTR MaLR 8 250 -109 9 889 1642 164 60 9 chr1 39954163 39954482 -157240950 - ORR1D1 LTR MaLR 0 374 40 9 889 580 253 122 12 chr1 39954590 39954750 -157240682 + B3A SINE B2 2 181 -17 9 889 297 0 0 0 chr1 39954750 39954783 -157240649 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 889 580 253 122 12 chr1 39954783 39954794 -157240638 + B3A SINE B2 182 192 -6 9 889 554 212 142 148 chr1 39954953 39955291 -157240141 - MER44A DNA MER2_type -1 338 3 9 889 404 300 36 0 chr1 39955698 39955808 -157239624 - MIRc SINE MIR -134 134 21 9 889 188 67 0 32 chr1 39957714 39957745 -157237687 + (CCCCCG)n Simple_repeat Simple_repeat 2 31 0 9 889 38 61 0 0 chr1 39957822 39957888 -157237544 + GC_rich Low_complexity Low_complexity 1 66 0 9 889 31 58 0 0 chr1 39957966 39958018 -157237414 + GC_rich Low_complexity Low_complexity 1 52 0 9 889 219 114 0 0 chr1 39958550 39958585 -157236847 + (T)n Simple_repeat Simple_repeat 1 35 0 9 889 205 88 0 29 chr1 39959303 39959338 -157236094 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 889 468 72 0 0 chr1 39960426 39960495 -157234937 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 889 279 0 0 0 chr1 39960495 39960526 -157234906 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 889 912 157 0 0 chr1 39961015 39961181 -157234251 + (CA)n Simple_repeat Simple_repeat 1 166 0 9 889 783 158 35 0 chr1 39961174 39961345 -157234087 + (CATA)n Simple_repeat Simple_repeat 4 180 0 9 889 418 299 194 16 chr1 39961390 39961638 -157233794 - B4A SINE B4 0 292 1 9 889 677 245 113 20 chr1 39961841 39962045 -157233387 + B4A SINE B4 4 226 -66 9 889 438 79 0 0 chr1 39962046 39962109 -157233323 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 889 195 42 0 0 chr1 39962770 39962794 -157232638 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 9 889 777 162 23 136 chr1 39963231 39963360 -157232072 + URR1B DNA MER1_type 36 156 -69 9 889 1188 69 0 0 chr1 39963360 39963505 -157231927 + B1_Mus1 SINE Alu 4 148 0 9 889 777 162 23 136 chr1 39963505 39963589 -157231843 + URR1B DNA MER1_type 157 225 0 9 889 441 0 0 0 chr1 39965375 39965424 -157230008 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 9 889 1145 72 7 0 chr1 39965439 39965591 -157229841 - B2_Mm1a SINE B2 -40 153 1 9 889 234 0 0 0 chr1 39965818 39965844 -157229588 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 889 694 190 28 7 chr1 39965924 39966067 -157229365 - B1_Mur1 SINE Alu -2 147 2 9 889 4481 186 39 19 chr1 39966816 39967695 -157227737 - RMER19B LTR ERVK -6 896 1 9 889 180 0 0 0 chr1 39968279 39968299 -157227133 + (G)n Simple_repeat Simple_repeat 1 20 0 9 889 351 150 0 0 chr1 39969545 39969605 -157225827 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 889 396 310 50 25 chr1 39971196 39971355 -157224077 - RSINE1 SINE B4 0 165 3 9 889 461 214 0 0 chr1 39971787 39971876 -157223556 - PB1D7 SINE Alu -6 114 26 9 889 897 269 90 12 chr1 39971951 39972295 -157223137 - MTE2b LTR MaLR -13 366 2 9 889 1197 148 243 0 chr1 39972300 39972564 -157222868 - ORR1B2 LTR MaLR 0 378 41 9 889 2931 179 47 21 chr1 39972606 39973307 -157222125 - ORR1B2-int LTR MaLR -4 1576 949 9 889 418 229 60 65 chr1 39973582 39973729 -157221703 - B3A SINE B2 -21 174 9 9 889 338 293 135 87 chr1 39973764 39973841 -157221591 - L1MEc LINE L1 -5302 1098 1029 9 889 399 89 0 0 chr1 39973841 39973897 -157221535 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 889 338 293 135 87 chr1 39973897 39974152 -157221280 - L1MEc LINE L1 -5372 1028 750 9 889 225 268 31 47 chr1 39974160 39974289 -157221143 - L1MEc LINE L1 -5624 776 650 9 889 463 259 140 16 chr1 39974339 39974582 -157220850 - L1MEc LINE L1 -5868 532 260 9 889 189 0 0 0 chr1 39974726 39974747 -157220685 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 889 259 204 0 0 chr1 39974787 39974831 -157220601 + URR1A DNA MER1_type 64 107 -119 9 889 275 260 14 0 chr1 39974816 39974889 -157220543 + URR1B DNA MER1_type 152 225 0 9 889 217 305 158 0 chr1 39975078 39975173 -157220259 - PB1D10 SINE Alu -5 112 3 9 889 238 231 163 8 chr1 39975173 39975262 -157220170 - B1_Mus2 SINE Alu -21 99 2 9 889 446 211 0 21 chr1 39975341 39975438 -157219994 - B1_Mur4 SINE Alu -1 149 55 9 889 425 278 162 25 chr1 39975470 39975772 -157219660 - L1MB8 LINE L1 -177 6006 5666 9 889 575 283 133 50 chr1 39975795 39976616 -157218816 - L1MB8 LINE L1 -577 5601 4712 9 890 386 184 83 15 chr1 39977443 39977544 -157217888 - B1_Mur2 SINE Alu -12 137 1 9 890 268 320 68 29 chr1 39978203 39978306 -157217126 - PB1D10 SINE Alu -9 108 2 9 890 226 299 56 22 chr1 39978666 39978755 -157216677 - MLT1C LTR MaLR -375 92 1 9 890 252 0 0 0 chr1 39978757 39978785 -157216647 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 890 1059 40 60 0 chr1 39979326 39979477 -157215955 + L1_Mus3 LINE L1 6472 6631 -7 9 890 256 98 24 0 chr1 39979794 39979835 -157215597 - MER5A1 DNA MER1_type -55 111 70 9 890 21 36 0 0 chr1 39981234 39981262 -157214170 + AT_rich Low_complexity Low_complexity 1 28 0 9 890 216 0 0 0 chr1 39981367 39981391 -157214041 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9 890 990 101 29 0 chr1 39981395 39981533 -157213899 - B1_Mus1 SINE Alu -6 142 1 9 890 338 154 77 0 chr1 39981552 39981617 -157213815 - B3 SINE B2 -6 210 141 9 890 278 262 114 19 chr1 39981611 39981716 -157213716 + B3 SINE B2 54 168 -48 9 890 1379 123 0 23 chr1 39981696 39981913 -157213519 + MTC LTR MaLR 208 419 -2 9 890 1103 237 80 50 chr1 39982113 39982477 -157212955 + MTE2a LTR MaLR 5 379 0 9 890 3270 149 37 21 chr1 39984013 39984581 -157210851 - RLTR20A2 LTR ERVK -1 577 1 9 890 660 133 161 15 chr1 39984614 39984744 -157210688 - MTC LTR MaLR -269 152 4 9 890 584 80 0 11 chr1 39984937 39985025 -157210407 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 9 890 313 218 141 0 chr1 39985273 39985351 -157210081 - B2_Mm2 SINE B2 0 195 107 9 890 186 261 31 0 chr1 39986034 39986099 -157209333 + MIR3 SINE MIR 106 172 -36 9 890 515 224 116 30 chr1 39986250 39986448 -157208984 - B3 SINE B2 -1 215 1 9 890 441 270 102 84 chr1 39986554 39986720 -157208712 - B4 SINE B4 -82 210 42 9 890 362 244 107 39 chr1 39986782 39986886 -157208546 + B1F SINE Alu 6 114 -35 9 890 299 270 95 149 chr1 39987027 39987249 -157208183 - B3 SINE B2 -5 211 2 1 890 204 346 82 15 chr1 39992330 39992465 -157202967 + MIRb SINE MIR 36 179 -89 1 890 287 217 106 0 chr1 39992850 39993011 -157202421 + (CCCCG)n Simple_repeat Simple_repeat 1 178 0 1 890 344 349 0 11 chr1 39992974 39993191 -157202241 + C-rich Low_complexity Low_complexity 1 214 0 1 890 203 0 0 36 chr1 39993681 39993709 -157201723 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 890 269 233 30 15 chr1 39995460 39995591 -157199841 + (TATG)n Simple_repeat Simple_repeat 2 134 0 1 890 323 288 75 17 chr1 39995601 39995766 -157199666 - B4A SINE B4 0 292 121 1 890 2808 159 89 13 chr1 39997024 39997553 -157197879 + RMER4B LTR ERVK 17 585 0 1 890 229 342 29 88 chr1 39997553 39997597 -157197835 - LTR78 LTR ERV1 -471 833 800 1 890 372 43 0 0 chr1 39999222 39999268 -157196164 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 890 378 0 0 0 chr1 40001561 40001603 -157193829 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 890 33 0 0 0 chr1 40002615 40002648 -157192784 + AT_rich Low_complexity Low_complexity 1 33 0 2 890 539 44 0 0 chr1 40002651 40002719 -157192713 - B1_Mus1 SINE Alu -79 69 2 3 890 238 322 0 25 chr1 40007063 40007184 -157188248 + (CGGGG)n Simple_repeat Simple_repeat 5 122 0 4 890 255 213 38 70 chr1 40008527 40008627 -157186805 - B1F1 SINE Alu -9 111 10 5 890 378 0 0 0 chr1 40010075 40010117 -157185315 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 6 890 276 215 31 0 chr1 40010767 40010832 -157184600 + CT-rich Low_complexity Low_complexity 4 70 0 7 890 405 0 0 0 chr1 40011766 40011811 -157183621 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 890 826 269 35 39 chr1 40011880 40012112 -157183320 - B4A SINE B4 -6 286 56 9 890 397 58 0 74 chr1 40012214 40012280 -157183152 - B2_Mm2 SINE B2 -107 109 50 1 890 1274 76 58 0 chr1 40012335 40012506 -157182926 - B2_Mm2 SINE B2 -13 182 2 1 890 1324 140 173 0 chr1 40012507 40012750 -157182682 - ORR1A2 LTR MaLR -42 285 1 1 890 228 259 17 0 chr1 40012750 40012808 -157182624 - RCHARR1 DNA MER1_type -915 59 1 1 890 1068 209 85 0 chr1 40014024 40014307 -157181125 - Lx9 LINE L1 -7 7637 7331 1 890 339 85 0 0 chr1 40014512 40014559 -157180873 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 890 870 239 34 0 chr1 40014585 40014761 -157180671 - B3 SINE B2 -34 182 1 1 890 395 323 96 107 chr1 40014818 40015099 -157180333 - B4 SINE B4 0 292 15 1 890 379 226 176 0 chr1 40016459 40016561 -157178871 + PB1D7 SINE Alu 1 120 0 1 890 183 114 0 0 chr1 40018249 40018284 -157177148 + (T)n Simple_repeat Simple_repeat 1 35 0 1 890 252 282 70 97 chr1 40018646 40018760 -157176672 + B3 SINE B2 103 213 -3 2 890 321 187 0 0 chr1 40019679 40019754 -157175678 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 890 232 204 103 69 chr1 40022128 40022145 -157173287 - B3A SINE B2 -22 176 160 2 890 198 0 0 0 chr1 40022145 40022167 -157173265 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 890 232 204 103 69 chr1 40022167 40022207 -157173225 - B3A SINE B2 -39 159 117 2 890 202 121 0 29 chr1 40022614 40022648 -157172784 + GA-rich Low_complexity Low_complexity 5 37 0 2 890 864 97 0 0 chr1 40022923 40023047 -157172385 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 2 890 1133 97 0 0 chr1 40023048 40023192 -157172240 - B1_Mus1 SINE Alu -4 144 1 2 890 7764 49 1 1 chr1 40023374 40024788 -157170644 + L1Md_F2 LINE L1 4952 6365 -217 2 890 223 72 23 23 chr1 40025818 40025861 -157169571 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 2 890 841 194 73 19 chr1 40027431 40027636 -157167796 - B3 SINE B2 0 216 1 2 890 324 0 0 0 chr1 40028494 40028530 -157166902 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 3 890 1087 53 8 0 chr1 40028530 40028663 -157166769 - B1_Mus2 SINE Alu -13 134 1 3 890 1112 144 21 26 chr1 40029029 40029222 -157166210 - B2_Mm2 SINE B2 -3 192 1 3 890 510 250 52 0 chr1 40029230 40029366 -157166066 - B1_Mur1 SINE Alu -6 143 1 3 890 312 27 0 0 chr1 40029952 40029989 -157165443 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 890 222 270 68 0 chr1 40030527 40030601 -157164831 - MIRc SINE MIR -130 138 60 3 890 648 299 143 47 chr1 40031322 40031799 -157163633 + L1MA4A LINE L1 4749 5285 -858 3 890 1502 48 32 0 chr1 40031799 40031986 -157163446 + B2_Mm1t SINE B2 1 193 0 3 890 648 299 143 47 chr1 40031986 40032102 -157163330 + L1MA4A LINE L1 5286 5398 -745 3 890 580 272 189 46 chr1 40032126 40032492 -157162940 + L1MA4A LINE L1 5492 5909 -394 3 890 272 137 20 0 chr1 40032582 40032633 -157162799 + A-rich Low_complexity Low_complexity 2 53 0 3 890 239 394 0 0 chr1 40032647 40032718 -157162714 + B4 SINE B4 222 292 0 3 890 244 198 161 11 chr1 40032815 40032902 -157162530 - MTE2b LTR MaLR -32 347 248 4 890 258 379 0 10 chr1 40036447 40036551 -157158881 + PB1D10 SINE Alu 2 104 -13 4 890 198 176 0 0 chr1 40037980 40038031 -157157401 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 4 890 21 0 0 0 chr1 40038456 40038477 -157156955 + AT_rich Low_complexity Low_complexity 1 21 0 4 890 486 124 0 0 chr1 40039392 40039481 -157155951 + (TCTG)n Simple_repeat Simple_repeat 2 90 0 4 890 243 0 0 0 chr1 40039485 40039512 -157155920 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 890 312 304 87 81 chr1 40039512 40039673 -157155759 - RSINE1 SINE B4 0 165 4 4 890 198 0 0 0 chr1 40040621 40040643 -157154789 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 890 218 333 0 23 chr1 40042116 40042202 -157153230 + CT-rich Low_complexity Low_complexity 4 87 0 4 890 299 279 15 0 chr1 40042532 40042600 -157152832 + PB1 SINE Alu 45 113 -14 4 890 356 203 0 0 chr1 40044126 40044200 -157151232 - L1M2 LINE L1 -1780 4363 4290 5 890 236 300 39 20 chr1 40044309 40044411 -157151021 - L1M2 LINE L1 -2061 4082 3979 5 890 222 266 173 0 chr1 40044446 40044535 -157150897 - B1F1 SINE Alu -5 115 12 5 890 213 121 0 0 chr1 40044545 40044578 -157150854 + (T)n Simple_repeat Simple_repeat 1 33 0 5 890 1283 34 0 0 chr1 40044578 40044725 -157150707 - B1_Mm SINE Alu 0 147 1 5 890 600 279 149 18 chr1 40044745 40045327 -157150105 - L1_Mur2 LINE L1 -2029 3851 3170 5 890 401 274 40 27 chr1 40047538 40047662 -157147770 + RSINE1 SINE B4 4 128 -37 5 890 333 47 0 0 chr1 40047662 40047705 -157147727 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 890 401 274 40 27 chr1 40047705 40047730 -157147702 + RSINE1 SINE B4 129 155 -10 5 890 442 192 70 10 chr1 40048699 40048799 -157146633 + B3A SINE B2 4 109 -89 5 890 503 259 43 43 chr1 40049280 40049421 -157146011 + RSINE1 SINE B4 10 150 -15 5 890 714 326 132 6 chr1 40049662 40049848 -157145584 - RMER5 LTR ERV1 0 534 332 5 890 741 65 0 0 chr1 40049848 40049956 -157145476 + (TG)n Simple_repeat Simple_repeat 2 109 0 6 890 714 326 132 6 chr1 40049956 40050133 -157145299 - RMER5 LTR ERV1 -203 331 126 5 890 3308 51 5 0 chr1 40051872 40052266 -157143166 - MTA_Mm LTR MaLR 0 396 1 6 890 185 268 71 0 chr1 40053252 40053308 -157142124 + MIRc SINE MIR 91 150 -118 6 890 231 189 37 19 chr1 40053967 40054021 -157141411 + GA-rich Low_complexity Low_complexity 3 57 0 6 890 216 0 0 0 chr1 40054102 40054126 -157141306 + (CATG)n Simple_repeat Simple_repeat 2 25 0 6 890 1176 175 15 0 chr1 40054994 40055194 -157140238 + B3 SINE B2 4 206 -10 6 890 192 97 0 0 chr1 40055278 40055309 -157140123 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 890 180 97 0 0 chr1 40056334 40056365 -157139067 + (T)n Simple_repeat Simple_repeat 1 31 0 6 890 21 0 0 0 chr1 40057275 40057296 -157138136 + AT_rich Low_complexity Low_complexity 1 21 0 6 890 21 36 0 0 chr1 40058641 40058669 -157136763 + AT_rich Low_complexity Low_complexity 1 28 0 6 890 198 0 0 0 chr1 40058858 40058880 -157136552 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7 890 303 85 0 0 chr1 40061884 40061931 -157133501 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 890 319 173 62 62 chr1 40062985 40063164 -157132268 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 7 890 231 178 58 64 chr1 40063262 40063418 -157132014 + (CTGTG)n Simple_repeat Simple_repeat 5 159 0 7 890 227 301 41 51 chr1 40063887 40063985 -157131447 - MIRc SINE MIR -146 122 26 7 890 229 289 45 45 chr1 40064171 40064305 -157131127 + LTR50 LTR ERVL 135 268 -527 7 890 222 118 0 0 chr1 40064789 40064823 -157130609 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 890 1267 98 0 30 chr1 40065989 40066188 -157129244 + B2_Mm2 SINE B2 2 194 -1 7 890 288 0 0 0 chr1 40066809 40066841 -157128591 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 890 328 182 52 32 chr1 40066857 40067109 -157128323 + (CA)n Simple_repeat Simple_repeat 1 257 0 7 890 189 154 0 0 chr1 40068587 40068626 -157126806 + CT-rich Low_complexity Low_complexity 1 39 0 7 890 24 32 0 0 chr1 40068933 40068964 -157126468 + AT_rich Low_complexity Low_complexity 1 31 0 8 890 186 43 0 0 chr1 40070034 40070057 -157125375 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 890 1020 188 87 0 chr1 40072480 40072687 -157122745 + URR1B DNA MER1_type 1 225 0 8 890 1108 287 93 111 chr1 40074252 40076241 -157119191 - L1MC2 LINE L1 -116 6228 4275 8 890 180 244 22 0 chr1 40077817 40077862 -157117570 + L3 LINE CR1 3572 3617 -872 8 890 274 224 54 0 chr1 40078328 40078411 -157117021 + B1F SINE Alu 3 100 -20 8 890 234 81 0 0 chr1 40080588 40080625 -157114807 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 890 420 20 0 0 chr1 40081101 40081150 -157114282 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 890 207 0 0 0 chr1 40081912 40081935 -157113497 + (CGAG)n Simple_repeat Simple_repeat 1 23 0 8 890 183 80 0 0 chr1 40082503 40082528 -157112904 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 890 222 208 0 0 chr1 40084764 40084812 -157110620 + CT-rich Low_complexity Low_complexity 54 101 0 9 890 306 0 0 0 chr1 40085604 40085638 -157109794 + (T)n Simple_repeat Simple_repeat 1 34 0 9 890 622 218 112 22 chr1 40085914 40086092 -157109340 + MTD LTR MaLR 205 398 -21 9 890 1348 58 35 0 chr1 40086166 40086340 -157109092 - B2_Mm2 SINE B2 -14 181 2 9 890 24 0 0 0 chr1 40086350 40086374 -157109058 + AT_rich Low_complexity Low_complexity 1 24 0 9 890 627 284 107 23 chr1 40087613 40087829 -157107603 - B4A SINE B4 -58 234 1 9 890 570 98 0 0 chr1 40089554 40089636 -157105796 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 9 890 814 166 130 43 chr1 40089683 40089891 -157105541 + URR1A DNA MER1_type 1 226 0 9 890 471 90 0 0 chr1 40089921 40089999 -157105433 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 890 267 31 0 0 chr1 40090227 40090259 -157105173 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 890 303 264 83 0 chr1 40091259 40091331 -157104101 - L1MEe LINE L1 -4029 825 748 1 890 907 319 124 26 chr1 40091336 40091805 -157103627 - Lx8 LINE L1 -6 7467 6953 1 890 21 0 0 0 chr1 40092134 40092155 -157103277 + AT_rich Low_complexity Low_complexity 1 21 0 1 890 600 281 83 17 chr1 40092195 40092376 -157103056 + B3A SINE B2 5 197 -1 1 890 481 187 274 8 chr1 40092432 40092556 -157102876 - B3 SINE B2 -12 204 48 1 890 441 277 30 0 chr1 40093213 40093314 -157102118 + U6 snRNA snRNA 1 104 -3 1 890 369 239 43 11 chr1 40093307 40093400 -157102032 - PB1D10 SINE Alu -21 96 1 1 890 469 261 58 0 chr1 40093976 40094114 -157101318 + B1F1 SINE Alu 2 147 -2 1 890 257 0 0 29 chr1 40094287 40094321 -157101111 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 890 473 268 107 14 chr1 40094787 40095003 -157100429 - HAL1 LINE L1 -646 1861 1626 1 890 1289 248 32 93 chr1 40095023 40095401 -157100031 - MTE2a LTR MaLR -24 355 1 1 890 319 315 60 49 chr1 40096102 40096369 -157099063 + L1MEg LINE L1 239 508 -5576 1 890 1265 139 85 19 chr1 40096605 40096817 -157098615 + URR1A DNA MER1_type 1 226 0 1 890 419 219 108 40 chr1 40097474 40097650 -157097782 + L1MB3 LINE L1 5216 5403 -743 1 890 461 282 58 26 chr1 40097694 40097895 -157097537 + L1MB3 LINE L1 5505 5702 -469 1 890 251 211 35 0 chr1 40098253 40098310 -157097122 + RMER15 LTR ERVL 445 503 -72 1 890 432 257 111 53 chr1 40098376 40098565 -157096867 + L1MB3 LINE L1 5798 5997 -186 1 890 946 269 43 12 chr1 40098679 40099006 -157096426 + ERVL-B4-int LTR ERVL 5371 5707 -7 1 890 870 307 87 81 chr1 40099014 40099542 -157095890 + MT2A LTR ERVL 3 533 0 1 890 1996 123 3 0 chr1 40100295 40100580 -157094852 + Lx4A LINE L1 6772 7057 -1 1 890 1158 282 102 43 chr1 40100739 40101129 -157094303 + L1_Rod LINE L1 1674 2085 -3762 1 890 1612 184 65 20 chr1 40101129 40101483 -157093949 - ORR1D1 LTR MaLR 0 374 5 1 890 1158 282 102 43 chr1 40101483 40101829 -157093603 + L1_Rod LINE L1 2086 2453 -3394 1 890 244 245 206 78 chr1 40101835 40101937 -157093495 + MTE2b LTR MaLR 6 120 -259 1 890 260 229 34 8 chr1 40103094 40103213 -157092219 + GA-rich Low_complexity Low_complexity 3 124 0 1 890 312 304 121 21 chr1 40103260 40103401 -157092031 + HAL1-3A_ME LINE L1 2284 2438 -420 1 890 3571 18 2 0 chr1 40103784 40104179 -157091253 - MTA_Mm LTR MaLR 0 396 1 1 890 9261 36 4 1 chr1 40104179 40105274 -157090158 - MTA_Mm-int LTR MaLR 0 1098 1 1 890 3571 18 2 0 chr1 40105274 40105669 -157089763 - MTA_Mm LTR MaLR 0 396 1 1 890 198 0 0 0 chr1 40105681 40105703 -157089729 + (A)n Simple_repeat Simple_repeat 1 22 0 1 890 279 0 0 0 chr1 40105868 40105899 -157089533 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 890 680 158 33 0 chr1 40106308 40106428 -157089004 + URR1A DNA MER1_type 83 206 -20 1 890 284 231 305 8 chr1 40107308 40107439 -157087993 - MTC LTR MaLR -251 170 1 1 890 740 230 69 6 chr1 40107600 40107775 -157087657 + B3A SINE B2 2 187 -11 1 111 327 292 0 33 chr1 40108014 40108106 -157087326 - MTEa LTR MaLR -13 366 278 1 891 302 258 0 0 chr1 40108776 40108838 -157086594 + L1MA8 LINE L1 5835 5896 -416 1 891 487 274 110 107 chr1 40108871 40109060 -157086372 + B4A SINE B4 1 198 -94 1 891 1136 250 91 29 chr1 40109060 40109402 -157086030 + ORR1D2 LTR MaLR 5 367 -3 1 891 487 274 110 107 chr1 40109402 40109502 -157085930 + B4A SINE B4 199 291 -1 1 891 793 76 212 0 chr1 40109544 40109662 -157085770 - B1_Mur4 SINE Alu -6 144 2 1 891 423 255 72 65 chr1 40109775 40109986 -157085446 + L1MA8 LINE L1 6048 6250 -41 1 891 322 293 8 39 chr1 40110017 40110145 -157085287 - L1MB7 LINE L1 -206 5978 5855 1 891 802 221 55 6 chr1 40110152 40110334 -157085098 - MTE2a LTR MaLR -18 361 171 1 891 588 259 86 55 chr1 40110864 40111087 -157084345 - MLT2B1 LTR ERVL -46 521 318 1 891 256 241 170 41 chr1 40111126 40111273 -157084159 - MLT2B1 LTR ERVL -349 166 1 1 891 232 286 0 0 chr1 40111538 40111587 -157083845 + Tigger5 DNA MER2_type 142 190 -2216 1 891 2547 217 87 95 chr1 40111665 40112631 -157082801 + RMER17B LTR ERVK 1 885 -23 1 891 242 312 94 43 chr1 40112903 40113020 -157082412 - MLT1A1 LTR MaLR -9 551 429 1 891 333 289 0 24 chr1 40113578 40113663 -157081769 - MLT1A1 LTR MaLR -16 392 310 1 891 180 120 0 57 chr1 40113748 40113801 -157081631 + (GGGTG)n Simple_repeat Simple_repeat 3 52 0 1 891 403 227 0 64 chr1 40115613 40115707 -157079725 - ID_B1 SINE B4 -7 217 130 1 891 191 280 133 0 chr1 40116130 40116205 -157079227 + MIRc SINE MIR 96 180 -88 1 891 330 45 0 0 chr1 40116906 40116950 -157078482 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 891 256 321 71 88 chr1 40117006 40117300 -157078132 - ORR1E LTR MaLR 0 359 71 1 891 1120 291 105 46 chr1 40117410 40117953 -157077479 - MER67C LTR ERV1 0 711 137 1 891 351 0 0 0 chr1 40118087 40118126 -157077306 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 891 363 315 104 87 chr1 40118346 40118645 -157076787 - ORR1E LTR MaLR -2 357 54 1 891 445 212 135 106 chr1 40118761 40118998 -157076434 + RMER17C LTR ERVK 1 244 -166 1 891 1062 282 91 38 chr1 40119103 40119215 -157076217 - Lx8 LINE L1 -6 7467 7352 1 891 243 0 0 0 chr1 40119215 40119242 -157076190 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 891 1062 282 91 38 chr1 40119242 40119601 -157075831 - Lx8 LINE L1 -122 7351 6972 1 891 1094 159 325 19 chr1 40120016 40120330 -157075102 + RMER17C LTR ERVK 1 410 0 1 891 2234 133 32 32 chr1 40120566 40120976 -157074456 + RMER17C LTR ERVK 1 410 0 1 891 387 0 0 0 chr1 40121008 40121051 -157074381 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 891 430 288 188 61 chr1 40122872 40123041 -157072391 + MER89 LTR ERV1 152 322 -237 1 891 441 0 0 0 chr1 40123041 40123090 -157072342 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 891 430 288 188 61 chr1 40123090 40123282 -157072150 + MER89 LTR ERV1 323 558 -1 1 891 333 0 0 0 chr1 40123483 40123520 -157071912 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 891 432 0 0 0 chr1 40124180 40124228 -157071204 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 891 245 302 25 25 chr1 40124354 40124476 -157070956 - L1MC4 LINE L1 -3 8039 7918 1 891 300 281 121 12 chr1 40124663 40124836 -157070596 - L1MC4 LINE L1 -396 7646 7455 1 891 328 186 71 0 chr1 40124858 40124928 -157070504 - MTEa LTR MaLR -12 367 293 1 891 323 278 10 20 chr1 40125031 40125130 -157070302 + GA-rich Low_complexity Low_complexity 5 102 0 1 891 342 0 0 0 chr1 40125141 40125179 -157070253 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 891 304 309 230 32 chr1 40125210 40125584 -157069848 + HAL1-3A_ME LINE L1 1990 2437 -421 1 891 533 204 0 22 chr1 40125587 40125819 -157069613 + GA-rich Low_complexity Low_complexity 1 226 0 1 891 406 353 170 37 chr1 40126114 40126685 -157068747 + LTR82A LTR ERVL 172 818 -54 1 891 1313 90 11 0 chr1 40127069 40127246 -157068186 + B2_Mm1t SINE B2 1 179 -14 1 891 428 139 330 9 chr1 40127330 40127439 -157067993 + B2_Mm2 SINE B2 47 190 -5 1 891 415 296 70 62 chr1 40127591 40127946 -157067486 + ORR1E LTR MaLR 1 379 0 1 891 685 268 38 0 chr1 40127983 40128140 -157067292 + B3A SINE B2 2 164 -34 1 891 252 0 0 0 chr1 40128146 40128174 -157067258 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 891 883 203 66 52 chr1 40128282 40128495 -157066937 + B3 SINE B2 1 216 0 1 891 259 269 124 16 chr1 40130993 40131114 -157064318 - MIR SINE MIR -44 218 85 1 891 595 250 169 0 chr1 40131188 40131336 -157064096 + B3A SINE B2 1 173 -25 1 891 447 100 0 0 chr1 40131340 40131410 -157064022 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 891 472 281 90 42 chr1 40131410 40131577 -157063855 + B3 SINE B2 39 213 -3 1 891 260 271 188 0 chr1 40132492 40132588 -157062844 - MLT1C LTR MaLR -333 134 21 1 891 188 289 34 25 chr1 40132591 40132678 -157062754 + MIRm SINE MIR 77 162 -46 1 891 801 110 17 8 chr1 40132953 40133072 -157062360 - PB1D9 SINE Alu 0 120 1 1 891 186 167 16 156 chr1 40133178 40133242 -157062190 - MIRb SINE MIR -187 81 27 1 891 810 192 142 5 chr1 40133304 40133508 -157061924 + MTD LTR MaLR 188 419 0 1 891 188 349 164 15 chr1 40133616 40133750 -157061682 - MER5A DNA MER1_type -27 162 9 1 891 503 313 86 66 chr1 40133963 40134312 -157061120 - MLT1A LTR MaLR -18 356 1 1 891 1012 171 31 0 chr1 40134562 40134755 -157060677 + Lx LINE L1 6443 6641 -13 1 891 331 295 59 75 chr1 40135018 40135460 -157059972 - RLTR40 LTR ERVK -47 770 231 1 891 303 237 40 30 chr1 40135531 40135631 -157059801 - MamRep4096 DNA hAT? -282 144 44 1 891 3584 18 2 0 chr1 40135673 40136068 -157059364 - MTA_Mm LTR MaLR 0 396 1 1 891 261 119 0 0 chr1 40136085 40136127 -157059305 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 891 339 25 0 0 chr1 40136563 40136603 -157058829 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 891 24 0 0 0 chr1 40137138 40137162 -157058270 + AT_rich Low_complexity Low_complexity 1 24 0 1 891 391 283 9 9 chr1 40137405 40137512 -157057920 + MLT1D LTR MaLR 24 130 -375 1 891 298 219 112 105 chr1 40137553 40137696 -157057736 + B3A SINE B2 55 198 0 1 891 1194 216 189 51 chr1 40137927 40138234 -157057198 - MTC LTR MaLR 0 421 48 1 891 3530 98 24 16 chr1 40138234 40138744 -157056688 + Lx3B LINE L1 6457 6970 -3 1 891 414 0 0 0 chr1 40138752 40138798 -157056634 + (CAA)n Simple_repeat Simple_repeat 3 48 0 1 891 1194 216 189 51 chr1 40138798 40138851 -157056581 - MTC LTR MaLR -379 42 1 1 891 1000 265 127 42 chr1 40139320 40139706 -157055726 + MTD LTR MaLR 1 419 0 1 891 598 171 9 9 chr1 40139768 40139874 -157055558 + B1_Mur1 SINE Alu 27 132 -17 1 891 499 173 18 0 chr1 40139884 40139994 -157055438 + GA-rich Low_complexity Low_complexity 3 114 0 1 891 183 80 0 0 chr1 40140000 40140025 -157055407 + (CTA)n Simple_repeat Simple_repeat 1 25 0 1 891 351 250 114 34 chr1 40140731 40140880 -157054552 - MLT1D LTR MaLR -66 439 279 1 891 238 314 70 0 chr1 40140959 40141045 -157054387 - MLT1D LTR MaLR -375 130 39 1 891 212 93 0 44 chr1 40141055 40141100 -157054332 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 891 324 0 0 0 chr1 40141352 40141388 -157054044 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 891 502 301 153 105 chr1 40143364 40143946 -157051486 + MLT1E LTR MaLR 41 650 -3 2 891 509 209 6 0 chr1 40144166 40144324 -157051108 + CT-rich Low_complexity Low_complexity 2 160 0 2 891 231 266 55 110 chr1 40144324 40144376 -157051056 + LTR48 LTR ERV1 103 154 -633 2 891 252 100 0 0 chr1 40144376 40144416 -157051016 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 891 231 266 55 110 chr1 40144416 40144472 -157050960 + LTR48 LTR ERV1 155 204 -583 2 891 389 326 0 0 chr1 40144472 40144570 -157050862 + MER5A DNA MER1_type 2 99 -90 2 891 789 190 0 0 chr1 40144951 40145130 -157050302 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 891 204 200 0 0 chr1 40145144 40145189 -157050243 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 891 198 0 0 0 chr1 40146790 40146812 -157048620 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 2 891 865 309 129 35 chr1 40147085 40147625 -157047807 - MLT1H1 LTR MaLR -8 547 5 2 891 376 277 36 70 chr1 40148138 40148292 -157047140 - MIR3 SINE MIR -50 158 13 2 891 192 231 250 0 chr1 40148648 40148752 -157046680 - MIRb SINE MIR -13 255 126 2 891 202 348 35 35 chr1 40148842 40148958 -157046474 + L3 LINE CR1 4208 4323 -166 2 891 405 0 0 0 chr1 40149058 40149103 -157046329 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 891 2173 35 0 4 chr1 40149738 40149996 -157045436 + L1_Mus1 LINE L1 6311 6567 0 2 891 2062 242 75 18 chr1 40150068 40150681 -157044751 - Lx8 LINE L1 -94 7379 6732 2 891 471 100 0 0 chr1 40150841 40150911 -157044521 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 891 1177 74 0 13 chr1 40150971 40151121 -157044311 - B1_Mus1 SINE Alu 0 148 1 2 891 360 0 0 0 chr1 40151757 40151797 -157043635 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 891 1426 228 86 9 chr1 40152008 40152335 -157043097 - ORR1E LTR MaLR -4 355 4 2 891 471 35 0 0 chr1 40152668 40152725 -157042707 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2 891 998 284 124 72 chr1 40152955 40153419 -157042013 - L1MA6 LINE L1 -20 6280 5807 2 891 261 0 0 0 chr1 40153419 40153448 -157041984 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 891 998 284 124 72 chr1 40153448 40153605 -157041827 - L1MA6 LINE L1 -494 5806 5627 2 891 373 374 33 24 chr1 40153623 40153834 -157041598 - MLT1J LTR MaLR -299 213 1 2 891 291 303 161 28 chr1 40153849 40154029 -157041403 + MIRb SINE MIR 26 229 -39 2 891 544 316 123 0 chr1 40155240 40155468 -157039964 - MER2 DNA MER2_type -3 342 87 2 891 204 289 39 0 chr1 40156009 40156061 -157039371 - MER5B DNA MER1_type -124 54 1 2 891 188 366 12 44 chr1 40158680 40158840 -157036592 - L2a LINE L2 -180 3246 3092 2 891 660 13 0 0 chr1 40159029 40159106 -157036326 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 891 6466 178 55 26 chr1 40159753 40161232 -157034200 - Lx5 LINE L1 -4 7046 5489 2 891 438 289 26 30 chr1 40161661 40161834 -157033598 - B3A SINE B2 -3 213 48 2 891 699 259 7 0 chr1 40162575 40162715 -157032717 + MTD LTR MaLR 13 153 -266 2 891 1775 157 28 32 chr1 40162715 40163177 -157032255 - ORR1B2 LTR MaLR 0 394 1 2 891 954 206 139 0 chr1 40163177 40163386 -157032046 + MTD LTR MaLR 149 386 -33 2 891 188 275 56 28 chr1 40163561 40163632 -157031800 + MIR3 SINE MIR 121 193 -15 2 891 335 336 106 29 chr1 40163678 40163923 -157031509 - L2a LINE L2 -71 3355 3092 2 891 424 285 12 26 chr1 40163959 40164207 -157031225 - L1MB3 LINE L1 -112 6071 5754 2 891 361 365 51 28 chr1 40164576 40164928 -157030504 - L1MB3 LINE L1 -896 5250 4891 2 891 1048 136 0 36 chr1 40165251 40165419 -157030013 + B2_Mm2 SINE B2 1 162 -33 2 891 222 171 0 0 chr1 40165514 40165555 -157029877 + A-rich Low_complexity Low_complexity 1 41 0 2 891 276 122 20 20 chr1 40165564 40165614 -157029818 + B3A SINE B2 4 53 -145 2 891 4138 71 40 4 chr1 40166016 40166568 -157028864 + L1_Mus3 LINE L1 6066 6637 -1 2 891 251 290 0 0 chr1 40166822 40166884 -157028548 - MLT1I LTR MaLR -2 409 348 2 891 1400 268 188 2 chr1 40167384 40167885 -157027547 - Lx8 LINE L1 -284 7189 6596 2 891 222 159 23 0 chr1 40168055 40168099 -157027333 + T-rich Low_complexity Low_complexity 2 46 0 2 891 234 0 0 0 chr1 40168238 40168264 -157027168 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 891 34 0 0 0 chr1 40168435 40168469 -157026963 + AT_rich Low_complexity Low_complexity 1 34 0 2 891 384 306 155 11 chr1 40169480 40169744 -157025688 + MER58B DNA MER1_type 40 341 0 2 891 1296 77 77 6 chr1 40170529 40170711 -157024721 - B2_Mm2 SINE B2 0 195 1 2 891 244 219 6 61 chr1 40170727 40170892 -157024540 + CT-rich Low_complexity Low_complexity 3 158 0 2 891 490 238 30 0 chr1 40170924 40171025 -157024407 - PB1D7 SINE Alu -14 106 3 2 891 319 316 25 42 chr1 40171025 40171052 -157024380 - ID SINE ID -141 83 59 2 891 494 181 8 38 chr1 40171322 40171454 -157023978 - L1Md_F2 LINE L1 -1 6581 6454 2 891 370 311 0 0 chr1 40171580 40171683 -157023749 + PB1D10 SINE Alu 5 107 -10 2 891 801 159 179 31 chr1 40172424 40172619 -157022813 + URR1A DNA MER1_type 1 224 -2 2 891 943 137 0 66 chr1 40173521 40173717 -157021715 + Lx4A LINE L1 6865 7047 -11 2 891 195 42 0 0 chr1 40173717 40173741 -157021691 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2 891 210 105 0 0 chr1 40173921 40173959 -157021473 + (C)n Simple_repeat Simple_repeat 1 38 0 2 891 210 118 0 0 chr1 40174392 40174426 -157021006 + (C)n Simple_repeat Simple_repeat 1 34 0 2 891 5816 30 4 1 chr1 40175785 40176464 -157018968 - L1Md_F2 LINE L1 -6 6576 5896 2 891 1045 98 110 6 chr1 40176477 40176641 -157018791 - B2_Mm2 SINE B2 -14 181 1 2 891 201 113 83 28 chr1 40177974 40178083 -157017349 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 2 891 201 254 0 0 chr1 40178232 40178291 -157017141 + T-rich Low_complexity Low_complexity 1 59 0 2 891 477 0 0 0 chr1 40178450 40178503 -157016929 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 891 191 36 36 0 chr1 40178590 40178618 -157016814 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 891 1213 35 0 0 chr1 40178618 40178759 -157016673 - B1_Mus1 SINE Alu -6 142 2 2 891 240 198 32 85 chr1 40179498 40179686 -157015746 + (CATA)n Simple_repeat Simple_repeat 2 179 0 2 891 319 211 40 40 chr1 40179764 40179937 -157015495 + (CATA)n Simple_repeat Simple_repeat 3 175 0 2 891 945 287 40 11 chr1 40180336 40180611 -157014821 - B4A SINE B4 -5 287 5 2 891 222 91 0 0 chr1 40180614 40180647 -157014785 + (TCC)n Simple_repeat Simple_repeat 2 34 0 2 891 791 277 55 22 chr1 40180738 40181011 -157014421 - B4A SINE B4 -2 290 9 2 891 267 31 0 0 chr1 40182099 40182131 -157013301 + (GGGTG)n Simple_repeat Simple_repeat 5 36 0 2 891 943 303 79 38 chr1 40182653 40183072 -157012360 + Lx9 LINE L1 6995 7430 -214 2 891 267 103 0 0 chr1 40183073 40183112 -157012320 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 891 440 248 0 13 chr1 40183167 40183322 -157012110 + (CATA)n Simple_repeat Simple_repeat 4 156 0 2 891 741 202 104 0 chr1 40183361 40183524 -157011908 + MTD LTR MaLR 1 180 -239 2 891 258 322 45 39 chr1 40183596 40183774 -157011658 + Lx8 LINE L1 7290 7468 -5 2 891 1062 223 104 61 chr1 40183900 40184283 -157011149 - MTD LTR MaLR 0 379 1 2 891 612 0 0 0 chr1 40184332 40184400 -157011032 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 2 891 4456 55 58 2 chr1 40184416 40184985 -157010447 - L1_Mus4 LINE L1 0 6636 6036 2 891 293 313 0 0 chr1 40185081 40185148 -157010284 - MLT1A LTR MaLR -289 85 19 2 891 1140 56 6 12 chr1 40189340 40189503 -157005929 + (TCTCCC)n Simple_repeat Simple_repeat 1 162 0 2 891 650 286 16 78 chr1 40189524 40189782 -157005650 - B4A SINE B4 -41 251 10 2 891 276 317 88 15 chr1 40190367 40190572 -157004860 - MER74A LTR ERVL 0 558 339 2 891 431 254 66 15 chr1 40190679 40190815 -157004617 - MER74A LTR ERVL -375 183 41 2 891 274 232 36 24 chr1 40190899 40190983 -157004449 + BC1_Mm scRNA scRNA 1 85 -67 2 891 1110 102 0 0 chr1 40192354 40192530 -157002902 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 2 891 1228 179 32 0 chr1 40193689 40193907 -157001525 + URR1A DNA MER1_type 1 225 -1 2 891 245 327 96 0 chr1 40194896 40195000 -157000432 - ORR1E LTR MaLR -226 133 20 2 891 378 134 0 0 chr1 40195095 40195162 -157000270 + (TCC)n Simple_repeat Simple_repeat 3 69 0 2 891 793 79 0 23 chr1 40195148 40195277 -157000155 + (TTCTC)n Simple_repeat Simple_repeat 1 126 0 2 891 246 253 143 44 chr1 40195279 40195370 -157000062 - PB1D10 SINE Alu 0 117 18 2 891 309 304 0 0 chr1 40195391 40195483 -156999949 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 2 891 327 288 0 0 chr1 40195494 40195567 -156999865 - B4 SINE B4 0 292 220 2 891 321 207 0 0 chr1 40195567 40195649 -156999783 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 891 713 267 59 89 chr1 40195654 40195925 -156999507 - B4A SINE B4 0 292 30 2 891 360 0 0 0 chr1 40195939 40195979 -156999453 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 891 301 308 95 9 chr1 40195984 40196089 -156999343 - B4A SINE B4 -67 225 112 2 891 319 239 23 0 chr1 40198035 40198123 -156997309 + MER2 DNA MER2_type 120 209 -136 2 891 189 175 0 0 chr1 40198491 40198531 -156996901 + GA-rich Low_complexity Low_complexity 1 40 0 2 891 1085 54 0 13 chr1 40198590 40198740 -156996692 + (GGGAGA)n Simple_repeat Simple_repeat 4 151 0 2 891 37646 51 1 4 chr1 40199066 40204775 -156990657 - L1Md_F2 LINE L1 -4 6581 792 2 891 258 163 0 0 chr1 40204773 40204816 -156990616 - L1Md_F LINE L1 -6191 328 286 2 891 615 200 48 158 chr1 40204814 40205087 -156990345 - L1Md_F2 LINE L1 -5987 632 309 2 891 266 192 51 64 chr1 40205789 40205867 -156989565 + ID4 SINE ID 1 77 -6 2 891 269 206 11 0 chr1 40205886 40205978 -156989454 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 891 432 334 103 52 chr1 40205987 40206375 -156989057 + MLT1H1 LTR MaLR 65 472 -83 2 891 1094 23 8 0 chr1 40206502 40206635 -156988797 + (TTCTC)n Simple_repeat Simple_repeat 3 136 0 3 891 414 0 0 0 chr1 40206636 40206682 -156988750 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 3 891 1036 102 7 0 chr1 40206683 40206830 -156988602 - B1_Mus1 SINE Alu 0 148 1 3 891 748 163 49 12 chr1 40207604 40207943 -156987489 + (TA)n Simple_repeat Simple_repeat 1 351 0 3 891 441 0 0 0 chr1 40208110 40208159 -156987273 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 3 891 579 29 0 0 chr1 40208159 40208227 -156987205 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 891 315 226 59 48 chr1 40208430 40208616 -156986816 - Lx9 LINE L1 0 7644 7457 3 891 225 269 0 0 chr1 40208616 40208683 -156986749 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 891 248 218 133 33 chr1 40209229 40209319 -156986113 - CR1_Mam LINE CR1 -614 1590 1492 3 891 183 80 0 0 chr1 40209564 40209589 -156985843 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 891 398 296 83 70 chr1 40209889 40210160 -156985272 + L1MA7 LINE L1 5746 6017 -274 3 891 3473 53 0 9 chr1 40210160 40210598 -156984834 + L1Md_F2 LINE L1 6149 6582 0 3 891 322 296 83 70 chr1 40210598 40210639 -156984793 + L1MA7 LINE L1 6018 6061 -230 3 891 1942 122 14 113 chr1 40211014 40211376 -156984056 + ORR1A3 LTR MaLR 1 326 0 3 891 2641 154 71 25 chr1 40211447 40211999 -156983433 + RLTR20B3 LTR ERVK 1 577 0 3 891 1785 51 8 29 chr1 40212135 40212377 -156983055 - L1_Mus1 LINE L1 -1 6566 6330 3 891 186 43 0 0 chr1 40212761 40212784 -156982648 + (T)n Simple_repeat Simple_repeat 1 23 0 3 891 1093 69 28 0 chr1 40212784 40212928 -156982504 - B1_Mus1 SINE Alu 0 148 1 3 891 1402 226 49 49 chr1 40213153 40213558 -156981874 - MTD LTR MaLR -14 405 1 3 891 219 267 67 38 chr1 40213947 40214052 -156981380 + MIRb SINE MIR 111 218 -50 3 891 870 219 85 5 chr1 40215803 40215991 -156979441 - B3 SINE B2 -13 203 1 3 891 599 291 80 61 chr1 40216339 40216650 -156978782 - ORR1E LTR MaLR -42 317 1 3 891 251 303 11 33 chr1 40216919 40217011 -156978421 - MLT1A1 LTR MaLR -12 396 307 3 891 320 240 0 10 chr1 40217478 40217579 -156977853 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 891 358 244 51 0 chr1 40217695 40217773 -156977659 + ID4 SINE ID 2 83 0 3 891 28 0 0 0 chr1 40218859 40218887 -156976545 + AT_rich Low_complexity Low_complexity 1 28 0 3 891 363 175 118 73 chr1 40220862 40220998 -156974434 - RLTR28 LTR ERVL -14 510 369 3 891 1420 192 202 12 chr1 40221293 40221705 -156973727 - Lx9 LINE L1 -1617 6027 5538 3 891 2545 169 31 11 chr1 40221708 40222229 -156973203 - L1_Rod LINE L1 -3667 2180 1650 3 891 952 163 33 71 chr1 40222241 40222452 -156972980 - Lx4B LINE L1 -1 7057 6855 3 891 3512 202 90 3 chr1 40222443 40223463 -156971969 - L1_Rod LINE L1 -4181 1666 550 3 891 1311 85 0 65 chr1 40223517 40223718 -156971714 - B2_Mm2 SINE B2 -5 190 3 3 891 2385 138 59 20 chr1 40223718 40224123 -156971309 + MTC LTR MaLR 1 421 0 3 891 309 232 134 0 chr1 40224128 40224210 -156971222 - L1_Rod LINE L1 -7061 111 19 3 891 426 276 42 47 chr1 40224209 40224399 -156971033 - L1_Rod LINE L1 -6956 652 464 3 891 1759 138 53 42 chr1 40224584 40224939 -156970493 + RLTR18 LTR ERVK 1 359 -257 3 891 7153 56 0 0 chr1 40224946 40225816 -156969616 - L1Md_T LINE L1 0 6582 5713 3 891 1242 167 18 0 chr1 40225816 40226043 -156969389 + RLTR18 LTR ERVK 343 573 -43 3 891 792 188 172 0 chr1 40226355 40226547 -156968885 + URR1B DNA MER1_type 1 225 0 3 891 302 343 70 14 chr1 40226597 40226810 -156968622 + RMER15 LTR ERVL 336 560 -15 3 891 239 241 12 0 chr1 40227072 40227155 -156968277 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 891 270 81 0 0 chr1 40227173 40227210 -156968222 + (CACG)n Simple_repeat Simple_repeat 1 37 0 3 891 318 26 0 0 chr1 40227211 40227250 -156968182 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 891 225 0 0 0 chr1 40227350 40227375 -156968057 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 891 207 167 0 0 chr1 40227375 40227417 -156968015 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 891 2981 165 43 34 chr1 40227602 40228229 -156967203 - RLTR26 LTR ERVK 0 642 10 3 891 848 295 146 49 chr1 40229203 40230011 -156965421 - Lx7 LINE L1 -5 7468 6587 3 891 515 238 8 8 chr1 40230311 40230434 -156964998 + MTD LTR MaLR 297 419 0 3 891 266 234 149 30 chr1 40230500 40230612 -156964820 - MIR3 SINE MIR -98 178 45 3 891 1708 219 70 39 chr1 40231495 40232007 -156963425 - RLTR11A LTR ERVK 0 528 1 3 891 650 257 110 59 chr1 40233401 40233743 -156961689 - L1ME2z LINE L1 -557 5887 5509 3 891 3129 145 74 18 chr1 40233743 40234297 -156961135 - RMER4B LTR ERVK 0 585 1 3 891 650 251 90 64 chr1 40234297 40234381 -156961051 - L1ME2z LINE L1 -656 5508 5418 3 891 23 0 0 0 chr1 40234397 40234420 -156961012 + AT_rich Low_complexity Low_complexity 1 23 0 3 891 271 345 12 0 chr1 40234555 40234639 -156960793 - MER81 DNA AcHobo 0 114 30 3 891 769 296 57 68 chr1 40234786 40235210 -156960222 - MTD LTR MaLR 0 419 1 3 891 206 347 13 0 chr1 40235283 40235358 -156960074 + CT-rich Low_complexity Low_complexity 2 77 0 3 891 2197 91 3 0 chr1 40235593 40235911 -156959521 - ORR1A2 LTR MaLR -8 319 1 3 891 232 322 0 0 chr1 40235925 40235984 -156959448 - MamGypLTR2c LTR Gypsy -657 411 353 3 891 642 293 68 8 chr1 40236884 40237135 -156958297 + Lx8 LINE L1 7171 7436 -37 3 891 326 338 21 0 chr1 40237512 40237654 -156957778 + MER2 DNA MER2_type 164 308 -37 3 891 216 300 0 0 chr1 40237777 40237837 -156957595 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 891 719 197 0 21 chr1 40238157 40238297 -156957135 - MTC LTR MaLR -279 142 6 3 891 276 227 61 0 chr1 40238527 40238593 -156956839 + Lx9 LINE L1 6358 6427 -1217 3 892 339 164 49 25 chr1 40239193 40239356 -156956076 + (CAGA)n Simple_repeat Simple_repeat 4 170 0 3 892 264 91 0 0 chr1 40239831 40239875 -156955557 + (T)n Simple_repeat Simple_repeat 1 44 0 3 892 552 30 0 0 chr1 40239919 40239985 -156955447 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 892 566 179 18 0 chr1 40239987 40240219 -156955213 + (CAGA)n Simple_repeat Simple_repeat 1 236 0 3 892 297 0 0 0 chr1 40240219 40240252 -156955180 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 892 564 221 0 0 chr1 40240782 40240895 -156954537 + RSINE1 SINE B4 8 120 -45 3 892 278 186 54 102 chr1 40241455 40241465 -156953967 + (CATG)n Simple_repeat Simple_repeat 4 12 0 3 892 363 23 0 0 chr1 40241465 40241509 -156953923 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 892 278 186 54 102 chr1 40241509 40241585 -156953847 + (CATG)n Simple_repeat Simple_repeat 4 79 0 3 892 216 0 0 0 chr1 40241585 40241609 -156953823 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 892 278 186 54 102 chr1 40241609 40241707 -156953725 + (CATG)n Simple_repeat Simple_repeat 4 95 0 3 892 225 246 78 9 chr1 40241674 40241789 -156953643 + (CATA)n Simple_repeat Simple_repeat 4 126 0 3 892 231 206 156 16 chr1 40242541 40242669 -156952763 + Lx9 LINE L1 6090 6235 -1409 3 892 1419 224 170 5 chr1 40242722 40243117 -156952315 + Lx9 LINE L1 6353 6812 -832 3 892 246 128 0 0 chr1 40243631 40243670 -156951762 + (T)n Simple_repeat Simple_repeat 1 39 0 3 892 765 0 0 0 chr1 40243869 40243954 -156951478 + (TTC)n Simple_repeat Simple_repeat 1 85 0 3 892 4586 62 2 43 chr1 40243954 40244581 -156950851 - L1_Mus2 LINE L1 -6 6560 5960 3 892 306 125 0 0 chr1 40245429 40245477 -156949955 + (TTAGGG)n Simple_repeat Simple_repeat 1 48 0 3 892 333 118 0 0 chr1 40247130 40247181 -156948251 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 892 799 234 30 0 chr1 40247192 40247359 -156948073 - B3A SINE B2 -26 172 1 3 892 258 317 41 16 chr1 40247677 40247799 -156947633 - RSINE1 SINE B4 -33 132 8 3 892 1104 213 26 101 chr1 40247889 40248331 -156947101 + RMER16 LTR ERVK 1 533 0 3 892 208 324 0 10 chr1 40248409 40248512 -156946920 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 892 208 146 18 35 chr1 40248514 40248571 -156946861 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 3 892 205 286 24 0 chr1 40248573 40248657 -156946775 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 892 265 215 40 61 chr1 40248736 40248835 -156946597 + L1ME1 LINE L1 5887 5983 -196 3 892 2524 207 105 37 chr1 40249108 40249696 -156945736 + RMER1B Other Other 341 948 -118 3 892 330 26 0 0 chr1 40249696 40249735 -156945697 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 892 2524 202 109 25 chr1 40249735 40249840 -156945592 + RMER1B Other Other 949 1054 -12 3 892 4241 126 67 22 chr1 40250476 40250892 -156944540 - RMER6A LTR ERVK 0 756 324 3 892 537 16 0 0 chr1 40250892 40250954 -156944478 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 892 1177 64 0 0 chr1 40250955 40251095 -156944337 - B1_Mus1 SINE Alu -6 142 3 3 892 4241 126 67 22 chr1 40251095 40251398 -156944034 - RMER6A LTR ERVK -433 323 3 3 892 36125 35 0 0 chr1 40251960 40257452 -156937980 + L1Md_T LINE L1 1 5589 -297 3 892 9112 8 0 0 chr1 40257452 40258448 -156936984 + L1Md_T LINE L1 5590 6585 0 3 892 1210 147 71 5 chr1 40259682 40259894 -156935538 - URR1A DNA MER1_type 0 226 1 3 892 357 252 44 61 chr1 40260104 40260218 -156935214 - Lx8 LINE L1 -469 7004 6893 3 892 369 196 8 84 chr1 40260738 40260869 -156934563 + L1VL2 LINE L1 168 276 -6142 3 892 2928 181 28 51 chr1 40260861 40261404 -156934028 + L1Md_F LINE L1 129 1121 -5495 3 892 6505 55 1 1 chr1 40261404 40262205 -156933227 + L1Md_F2 LINE L1 5782 6582 0 3 892 20857 107 8 13 chr1 40262205 40265469 -156929963 + L1Md_F LINE L1 1122 4306 -1577 3 892 7506 62 23 4 chr1 40265492 40266453 -156928979 + L1_Mus2 LINE L1 5587 6565 -1 3 892 264 284 84 152 chr1 40266866 40267057 -156928375 - B4 SINE B4 0 292 115 3 892 779 80 0 9 chr1 40267075 40267188 -156928244 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 3 892 1427 90 0 5 chr1 40267200 40267390 -156928042 - B2_Mm2 SINE B2 -6 189 1 3 892 450 260 40 20 chr1 40267413 40267562 -156927870 - B3A SINE B2 -1 197 46 3 892 502 209 0 0 chr1 40267580 40267666 -156927766 - B4 SINE B4 -197 95 10 3 892 2121 70 23 3 chr1 40268353 40268655 -156926777 - IAPLTR2b LTR ERVK -19 308 1 4 892 1026 77 42 7 chr1 40269383 40269526 -156925906 - B1_Mus1 SINE Alu 0 148 1 4 892 625 252 69 6 chr1 40270042 40270202 -156925230 + B3A SINE B2 2 171 -27 4 892 495 0 0 0 chr1 40270202 40270257 -156925175 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 892 1427 208 76 15 chr1 40270424 40270765 -156924667 + MTD LTR MaLR 35 396 -23 4 892 1606 287 91 14 chr1 40271921 40272490 -156922942 - Lx8 LINE L1 -91 7382 6770 4 892 486 194 31 8 chr1 40272501 40272631 -156922801 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 4 892 993 107 0 0 chr1 40272660 40272809 -156922623 + (CATA)n Simple_repeat Simple_repeat 2 150 0 4 892 182 159 0 43 chr1 40272811 40272857 -156922575 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 4 892 1243 240 59 10 chr1 40272878 40273168 -156922264 - Lx8 LINE L1 -819 6654 6351 4 892 373 308 48 21 chr1 40273606 40273792 -156921640 + RMER15 LTR ERVL 334 524 -51 4 892 355 127 42 0 chr1 40275332 40275403 -156920029 + CT-rich Low_complexity Low_complexity 4 77 0 4 892 260 186 13 91 chr1 40276502 40276579 -156918853 - MLT1A1 LTR MaLR -12 396 326 4 892 1638 177 84 73 chr1 40277973 40278400 -156917032 + RMER19B LTR ERVK 1 432 -470 4 892 1312 112 211 0 chr1 40278398 40278658 -156916774 + RMER19B LTR ERVK 576 890 -12 4 892 545 176 14 22 chr1 40279158 40279297 -156916135 + CT-rich Low_complexity Low_complexity 2 139 0 4 892 285 310 11 45 chr1 40279534 40279713 -156915719 + GA-rich Low_complexity Low_complexity 3 175 0 4 892 1329 100 16 21 chr1 40281032 40281226 -156914206 + B2_Mm2 SINE B2 2 194 -1 4 892 378 0 0 0 chr1 40282782 40282824 -156912608 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 892 296 19 0 70 chr1 40283047 40283104 -156912328 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 892 1194 132 16 21 chr1 40283498 40283692 -156911740 - B2_Mm2 SINE B2 -2 193 1 4 892 451 221 15 59 chr1 40284333 40284468 -156910964 + B4A SINE B4 121 249 -43 4 892 387 187 0 13 chr1 40286869 40286945 -156908487 - ID4_ SINE ID -7 76 2 4 892 478 183 24 6 chr1 40287511 40287676 -156907756 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 892 241 156 41 10 chr1 40287711 40287808 -156907624 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 892 397 185 40 6 chr1 40287852 40288026 -156907406 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 892 903 311 8 4 chr1 40288038 40288306 -156907126 - B4A SINE B4 -12 280 12 4 892 365 287 29 38 chr1 40288728 40288833 -156906599 + PB1D7 SINE Alu 8 111 -9 4 892 246 279 40 16 chr1 40290499 40290623 -156904809 - MER2 DNA MER2_type -129 216 90 4 892 631 328 79 10 chr1 40290790 40291095 -156904337 + MLT1A0 LTR MaLR 40 365 0 4 892 194 0 39 0 chr1 40291143 40291169 -156904263 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 892 183 80 0 0 chr1 40291998 40292023 -156903409 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 892 446 303 40 47 chr1 40292024 40292173 -156903259 - B3 SINE B2 -54 162 15 4 892 425 318 130 9 chr1 40292293 40292509 -156902923 - Tigger5 DNA MER2_type -2162 244 3 4 892 334 313 80 7 chr1 40293554 40293705 -156901727 - MER5B DNA MER1_type 0 178 17 4 892 254 194 15 0 chr1 40294251 40294318 -156901114 + GA-rich Low_complexity Low_complexity 1 68 0 4 892 334 250 86 111 chr1 40294441 40294720 -156900712 + B4A SINE B4 2 273 -19 4 892 1710 50 66 0 chr1 40294804 40295046 -156900386 + MTA_Mm LTR MaLR 139 396 0 4 892 9473 20 15 0 chr1 40295046 40296128 -156899304 + MTA_Mm-int LTR MaLR 1 1098 0 4 892 3241 34 39 0 chr1 40296128 40296509 -156898923 + MTA_Mm LTR MaLR 1 396 0 4 892 293 297 86 0 chr1 40298781 40298909 -156896523 + MER21B LTR ERV1 139 277 -586 4 892 543 321 140 9 chr1 40298984 40299333 -156896099 + MER21B LTR ERV1 404 798 -65 4 892 256 330 0 60 chr1 40299916 40300100 -156895332 - L1MA9 LINE L1 -1 6311 6139 4 892 759 304 57 23 chr1 40300292 40300555 -156894877 - B4A SINE B4 -13 279 8 4 892 299 270 62 62 chr1 40300745 40300891 -156894541 + MTEb LTR MaLR 234 379 0 4 892 459 0 0 0 chr1 40300921 40300972 -156894460 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 892 189 0 0 0 chr1 40301255 40301276 -156894156 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 892 14092 75 34 6 chr1 40301339 40301736 -156893696 - L1VL2 LINE L1 -627 2988 2567 4 892 1023 120 0 0 chr1 40301736 40301894 -156893538 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 4 892 14092 82 28 12 chr1 40301894 40304317 -156891115 - L1VL2 LINE L1 -1049 2566 120 4 892 698 319 54 42 chr1 40306069 40306328 -156889104 + B4A SINE B4 21 282 -10 4 892 22 88 0 0 chr1 40306738 40306795 -156888637 + AT_rich Low_complexity Low_complexity 1 57 0 4 892 1430 257 38 79 chr1 40307265 40307798 -156887634 + RLTR11A LTR ERVK 18 528 0 4 892 1137 83 0 0 chr1 40307851 40308031 -156887401 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 892 2200 101 3 0 chr1 40308644 40308962 -156886470 - ORR1A2 LTR MaLR -8 319 1 4 892 223 344 98 0 chr1 40309297 40309419 -156886013 - L2a LINE L2 0 3426 3293 4 892 279 0 0 0 chr1 40309670 40309701 -156885731 + (A)n Simple_repeat Simple_repeat 1 31 0 4 892 233 280 19 39 chr1 40311098 40311202 -156884230 + MTEa LTR MaLR 48 149 -210 4 892 258 192 19 0 chr1 40311358 40311410 -156884022 + MTEa LTR MaLR 327 379 0 4 892 577 324 61 52 chr1 40311755 40312195 -156883237 - Charlie1b DNA MER1_type -43 480 37 4 892 233 188 62 15 chr1 40312245 40312310 -156883122 - L1MA5 LINE L1 -1 6299 6232 4 892 512 302 111 17 chr1 40312360 40312667 -156882765 - L1MA7 LINE L1 -166 6125 5789 4 892 369 0 0 0 chr1 40312667 40312708 -156882724 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 892 512 286 76 25 chr1 40312708 40312786 -156882646 - L1MA7 LINE L1 -401 5788 5708 4 892 206 263 0 34 chr1 40313000 40313059 -156882373 + CT-rich Low_complexity Low_complexity 1 57 0 4 892 566 308 224 21 chr1 40313319 40313993 -156881439 + L1MEc LINE L1 45 855 -5545 4 892 236 239 56 0 chr1 40314025 40314096 -156881336 + L1MEc LINE L1 927 1001 -5399 4 892 803 316 136 46 chr1 40314129 40314992 -156880440 + L1MEc LINE L1 3674 4613 -1706 4 892 280 217 8 48 chr1 40315212 40315242 -156880190 + polypyrimidine Low_complexity Low_complexity 96 125 0 4 892 1368 67 0 0 chr1 40315242 40315422 -156880010 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 892 1059 40 33 44 chr1 40315424 40315606 -156879826 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 892 280 217 8 48 chr1 40315606 40315698 -156879734 + CT-rich Low_complexity Low_complexity 6 95 0 4 892 1295 85 26 16 chr1 40315735 40315926 -156879506 + B2_Mm2 SINE B2 2 194 -1 4 892 288 247 133 10 chr1 40315926 40316024 -156879408 - B1F1 SINE Alu -38 111 2 4 892 28 0 0 0 chr1 40316149 40316177 -156879255 + AT_rich Low_complexity Low_complexity 1 28 0 4 892 451 361 0 0 chr1 40316301 40316445 -156878987 + (TG)n Simple_repeat Simple_repeat 1 144 0 4 892 366 313 147 31 chr1 40318547 40318724 -156876708 - MLT1G LTR MaLR -271 320 123 4 892 180 0 0 0 chr1 40318724 40318744 -156876688 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 4 892 366 313 147 31 chr1 40318744 40318790 -156876642 - MLT1G LTR MaLR -469 122 72 4 892 550 257 14 7 chr1 40319093 40319234 -156876198 + B4 SINE B4 2 143 -149 4 892 495 33 0 0 chr1 40319289 40319350 -156876082 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 892 297 75 0 0 chr1 40319917 40319957 -156875475 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 4 892 290 295 22 11 chr1 40321163 40321252 -156874180 + PB1 SINE Alu 24 113 -14 4 892 278 306 0 0 chr1 40321394 40321466 -156873966 - ID4 SINE ID 0 83 12 4 892 324 319 55 3 chr1 40321613 40321757 -156873675 + L1_Rod LINE L1 5610 5828 -472 4 892 188 224 52 0 chr1 40322055 40322113 -156873319 + MER5B DNA MER1_type 19 79 -99 4 892 288 0 0 0 chr1 40323887 40323919 -156871513 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 892 204 307 58 29 chr1 40325004 40325108 -156870324 - L2a LINE L2 -2 3424 3318 4 892 632 45 11 0 chr1 40329509 40329597 -156865835 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 892 355 209 97 21 chr1 40329604 40329697 -156865735 + MLT1A1 LTR MaLR 291 390 -18 4 892 409 112 66 30 chr1 40329744 40329910 -156865522 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 4 892 226 285 151 0 chr1 40332354 40332540 -156862892 + ORSL-2a DNA Tip100 46 259 -83 4 892 4046 82 58 2 chr1 40333695 40334248 -156861184 - MT2B2 LTR ERVL 0 584 1 4 892 590 104 0 10 chr1 40334562 40334659 -156860773 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 892 354 215 72 36 chr1 40335183 40335294 -156860138 - PB1D10 SINE Alu -1 116 2 4 892 2028 80 20 7 chr1 40335396 40335697 -156859735 - ORR1A2 LTR MaLR -22 305 1 4 892 475 235 49 56 chr1 40337790 40337947 -156857485 + L1MA4 LINE L1 5650 5856 -444 4 892 188 303 79 0 chr1 40339543 40339619 -156855813 - L2b LINE L2 -1 3374 3293 4 892 342 298 37 37 chr1 40340094 40340230 -156855202 + B4A SINE B4 32 167 -125 4 892 598 155 0 29 chr1 40340263 40340436 -156854996 + (CCA)n Simple_repeat Simple_repeat 1 168 0 4 892 225 119 0 0 chr1 40340453 40340495 -156854937 + (CCA)n Simple_repeat Simple_repeat 1 42 0 4 892 272 328 84 65 chr1 40340633 40340894 -156854538 - L2b LINE L2 -654 2765 2500 4 892 486 0 0 0 chr1 40341204 40341258 -156854174 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 892 276 244 50 77 chr1 40342016 40342290 -156853142 - RLTR11B LTR ERVK -37 491 206 4 892 650 161 15 0 chr1 40342300 40342430 -156853002 + (TCTCTG)n Simple_repeat Simple_repeat 1 132 0 4 892 565 227 92 57 chr1 40342430 40342679 -156852753 - RLTR11B LTR ERVK -272 255 1 4 892 543 277 135 46 chr1 40342710 40343220 -156852212 - Lx9 LINE L1 -141 7503 6947 4 892 396 59 0 0 chr1 40343220 40343271 -156852161 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 892 543 280 93 70 chr1 40343271 40343289 -156852143 - Lx9 LINE L1 -698 6946 6929 4 892 247 143 21 0 chr1 40343539 40343599 -156851833 - L1M4 LINE L1 -4975 2359 2312 4 892 22 0 0 0 chr1 40343795 40343817 -156851615 + AT_rich Low_complexity Low_complexity 1 22 0 4 892 363 133 13 0 chr1 40343817 40343892 -156851540 - Lx3A LINE L1 -4 6977 6902 4 892 276 235 95 29 chr1 40344052 40344157 -156851275 - L1M4 LINE L1 -5592 1742 1631 4 892 326 195 12 0 chr1 40344216 40344298 -156851134 + CT-rich Low_complexity Low_complexity 2 84 0 4 892 317 320 43 13 chr1 40344298 40344529 -156850903 - L1M4 LINE L1 -5250 1654 1417 4 892 188 122 41 0 chr1 40344661 40344710 -156850722 + (TCTG)n Simple_repeat Simple_repeat 3 53 0 4 892 381 43 0 0 chr1 40344716 40344763 -156850669 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 892 1555 168 124 13 chr1 40344811 40345198 -156850234 - BGLII_B LTR ERVK 0 441 12 4 892 516 193 28 0 chr1 40345194 40345303 -156850129 - B3A SINE B2 -85 113 2 4 892 266 238 210 16 chr1 40345322 40345446 -156849986 - L1M4 LINE L1 -5546 1358 1211 4 892 288 218 200 50 chr1 40345495 40345635 -156849797 - L1M4 LINE L1 -5790 1114 954 4 892 192 231 0 0 chr1 40345958 40346010 -156849422 + CT-rich Low_complexity Low_complexity 3 54 0 5 892 517 287 169 35 chr1 40346626 40347286 -156848146 - L1M5 LINE L1 -2178 3968 3218 5 892 558 330 27 19 chr1 40347798 40348061 -156847371 + MTE-int LTR MaLR 258 522 -1058 5 892 254 273 56 11 chr1 40348218 40348307 -156847125 + MTE-int LTR MaLR 769 861 -719 5 892 545 281 14 52 chr1 40348476 40348686 -156846746 + MTE-int LTR MaLR 1343 1544 -36 5 892 874 200 0 0 chr1 40348999 40349144 -156846288 + B1_Mur4 SINE Alu 1 145 -5 5 892 672 228 23 115 chr1 40350825 40351043 -156844389 + B3A SINE B2 1 198 0 5 892 280 280 93 31 chr1 40351905 40352034 -156843398 - ORR1E LTR MaLR -40 339 203 5 892 340 171 18 37 chr1 40352072 40352181 -156843251 + G-rich Low_complexity Low_complexity 1 107 0 5 892 358 171 11 22 chr1 40352265 40352355 -156843077 + GA-rich Low_complexity Low_complexity 2 90 0 5 892 224 147 51 51 chr1 40352387 40352466 -156842966 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 5 892 631 220 5 138 chr1 40352469 40352664 -156842768 - ORR1E LTR MaLR -188 171 3 5 892 291 342 0 0 chr1 40352914 40352987 -156842445 + ID4 SINE ID 6 78 -5 5 892 2130 88 0 56 chr1 40353370 40353708 -156841724 - ORR1A2 LTR MaLR -8 319 1 5 892 217 351 0 0 chr1 40354453 40354530 -156840902 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 892 180 219 0 0 chr1 40355321 40355362 -156840070 + G-rich Low_complexity Low_complexity 1 41 0 5 892 1065 45 16 33 chr1 40355362 40355545 -156839887 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 892 406 307 102 0 chr1 40355675 40355841 -156839591 + B4 SINE B4 10 192 -100 5 892 265 300 0 0 chr1 40355867 40356027 -156839405 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 892 234 229 0 0 chr1 40356040 40356110 -156839322 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 892 882 169 142 5 chr1 40356606 40356796 -156838636 + B3 SINE B2 1 216 0 5 892 417 70 0 0 chr1 40358134 40358191 -156837241 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 892 377 306 0 0 chr1 40358203 40358337 -156837095 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 892 264 209 0 0 chr1 40358382 40358473 -156836959 + (TG)n Simple_repeat Simple_repeat 1 91 0 5 892 305 250 6 0 chr1 40358533 40358689 -156836743 + (TG)n Simple_repeat Simple_repeat 1 157 0 5 892 207 146 0 0 chr1 40358722 40358763 -156836669 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 892 280 0 50 0 chr1 40358817 40358857 -156836575 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 892 736 105 8 16 chr1 40359536 40359662 -156835770 + (TCC)n Simple_repeat Simple_repeat 3 127 0 5 892 2895 170 19 8 chr1 40359873 40360388 -156835044 + RLTR17 LTR ERVK 172 692 0 5 892 7845 205 59 75 chr1 40360388 40361377 -156834055 + RMER3D-int LTR ERVK 1 1281 -1561 5 892 1064 79 43 0 chr1 40361377 40361516 -156833916 + B1_Mus2 SINE Alu 2 146 -1 5 892 7845 190 55 82 chr1 40361516 40363099 -156832333 + RMER3D-int LTR ERVK 1282 2842 0 5 892 1753 157 16 6 chr1 40363099 40363419 -156832013 + RLTR17 LTR ERVK 10 332 -360 5 892 1102 46 0 79 chr1 40363424 40363588 -156831844 + L1_Mus1 LINE L1 6417 6567 0 5 892 341 130 0 0 chr1 40363606 40363660 -156831772 + RLTR17 LTR ERVK 315 368 -324 5 892 180 0 0 0 chr1 40363660 40363680 -156831752 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 5 892 3001 21 2 144 chr1 40363720 40364172 -156831260 + RLTR10 LTR ERVK 1 388 -2 5 892 17201 26 2 3 chr1 40364184 40366129 -156829303 + RLTR10-int LTR ERVK 41 1984 -3 5 892 3010 23 2 143 chr1 40366131 40366585 -156828847 + RLTR10 LTR ERVK 1 390 0 5 892 270 116 0 0 chr1 40366633 40366676 -156828756 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 5 892 733 261 101 73 chr1 40368082 40368409 -156827023 + Lx8 LINE L1 7136 7471 -2 5 892 1130 206 70 22 chr1 40368686 40368959 -156826473 - MTD LTR MaLR -124 295 10 5 893 216 97 0 0 chr1 40371896 40371927 -156823505 + (T)n Simple_repeat Simple_repeat 1 31 0 5 893 25 0 0 0 chr1 40372843 40372868 -156822564 + AT_rich Low_complexity Low_complexity 1 25 0 5 893 2260 151 77 3 chr1 40373147 40373539 -156821893 + MTC LTR MaLR 1 421 0 5 893 251 227 91 0 chr1 40373631 40373697 -156821735 + ID2 SINE ID 2 73 -10 5 893 216 282 90 0 chr1 40373697 40373709 -156821723 + ID SINE ID 2 86 -138 5 893 603 282 47 44 chr1 40375056 40375394 -156820038 + L1_Mur3 LINE L1 5207 5545 -335 5 893 958 235 98 16 chr1 40375396 40375711 -156819721 - RMER17C LTR ERVK -69 341 1 5 893 454 202 8 102 chr1 40375874 40375895 -156819537 + MT2B LTR ERVL 149 157 -444 5 893 827 78 0 0 chr1 40375895 40376011 -156819421 + B1_Mm SINE Alu 2 117 -30 5 893 530 15 15 0 chr1 40376013 40376080 -156819352 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 893 195 242 0 0 chr1 40376935 40376997 -156818435 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 893 459 290 28 42 chr1 40377547 40377691 -156817741 + RSINE1 SINE B4 6 147 -18 5 893 439 325 6 12 chr1 40377730 40377895 -156817537 + (CA)n Simple_repeat Simple_repeat 1 164 0 5 893 747 33 0 0 chr1 40379827 40379917 -156815515 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 893 661 224 3 68 chr1 40380462 40380648 -156814784 + B3A SINE B2 35 212 -4 5 893 369 0 0 0 chr1 40384155 40384196 -156811236 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 5 893 223 47 0 85 chr1 40385105 40385152 -156810280 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 5 893 180 125 0 0 chr1 40385779 40385811 -156809621 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 893 220 27 0 51 chr1 40386017 40386056 -156809376 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 5 893 750 78 0 0 chr1 40386314 40386416 -156809016 + (TC)n Simple_repeat Simple_repeat 1 102 0 5 893 839 125 226 6 chr1 40386757 40386934 -156808498 - URR1A DNA MER1_type -10 216 1 5 893 759 293 94 42 chr1 40387608 40388160 -156807272 - L1MEg LINE L1 -2911 3235 2655 5 893 350 335 68 92 chr1 40388368 40388923 -156806509 - L1MEg LINE L1 -4635 1607 1066 5 893 449 213 0 0 chr1 40388976 40389051 -156806381 - ID4 SINE ID -5 78 4 5 893 20696 99 12 11 chr1 40389079 40392844 -156802588 - L1_Mus3 LINE L1 -1 6637 2889 5 893 1062 82 0 0 chr1 40392844 40392990 -156802442 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 5 893 20696 104 14 13 chr1 40392990 40393039 -156802393 - L1_Mus3 LINE L1 -2995 2888 2820 5 893 6230 93 9 29 chr1 40393037 40394529 -156800903 - L1VL1 LINE L1 -2048 1650 193 5 893 525 289 36 70 chr1 40394603 40394904 -156800528 - B4A SINE B4 0 292 2 5 893 2310 230 57 60 chr1 40395339 40396149 -156799283 - RLTR40 LTR ERVK -10 807 1 5 893 365 309 45 13 chr1 40396558 40396712 -156798720 + RLTR40 LTR ERVK 649 807 -10 5 893 180 286 0 0 chr1 40397153 40397195 -156798237 + MIRm SINE MIR 155 196 -80 5 893 1247 27 0 13 chr1 40397265 40397414 -156798018 + B1_Mus2 SINE Alu 1 147 0 5 893 366 143 0 0 chr1 40397415 40397478 -156797954 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 893 590 251 200 41 chr1 40397617 40397862 -156797570 + B4 SINE B4 9 292 0 5 893 777 131 22 11 chr1 40397905 40398083 -156797349 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 893 394 151 19 0 chr1 40398099 40398205 -156797227 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 893 405 0 0 0 chr1 40398705 40398750 -156796682 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 893 234 0 0 0 chr1 40398750 40398775 -156796657 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 893 570 15 0 0 chr1 40398827 40398894 -156796538 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 893 375 23 0 0 chr1 40398894 40398937 -156796495 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 893 586 272 28 43 chr1 40398972 40399183 -156796249 + MTEa LTR MaLR 12 219 -160 5 893 415 178 30 24 chr1 40399348 40399515 -156795917 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 5 893 772 152 7 33 chr1 40399587 40399737 -156795695 - URR1A DNA MER1_type 0 226 81 5 893 1024 181 42 33 chr1 40400837 40401049 -156794383 - B3 SINE B2 0 216 3 5 893 1242 87 0 0 chr1 40401058 40401231 -156794201 + (TTC)n Simple_repeat Simple_repeat 3 175 0 5 893 941 149 0 11 chr1 40401231 40401407 -156794025 + C-rich Low_complexity Low_complexity 1 174 0 5 893 478 69 0 0 chr1 40401409 40401497 -156793935 + (TTC)n Simple_repeat Simple_repeat 1 88 0 5 893 220 299 0 49 chr1 40403513 40403594 -156791838 - PB1D10 SINE Alu -5 112 36 5 893 270 246 0 0 chr1 40403697 40403758 -156791674 - MTC LTR MaLR -360 61 1 5 893 749 175 185 55 chr1 40404460 40404660 -156790772 + URR1A DNA MER1_type 1 226 0 5 893 414 0 0 0 chr1 40404663 40404709 -156790723 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 893 687 286 95 22 chr1 40404728 40404894 -156790538 + B4 SINE B4 41 214 -78 5 893 423 0 0 0 chr1 40404894 40404941 -156790491 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 5 893 687 286 95 22 chr1 40404941 40404996 -156790436 + B4 SINE B4 215 277 -15 5 893 324 70 0 0 chr1 40404998 40405041 -156790391 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 893 436 269 9 9 chr1 40405899 40406004 -156789428 - PB1D10 SINE Alu -12 105 1 5 893 243 315 116 16 chr1 40406020 40406323 -156789109 + L1M5 LINE L1 4903 5235 -911 5 893 324 158 0 0 chr1 40406665 40406722 -156788710 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 5 893 207 0 0 0 chr1 40407341 40407364 -156788068 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 5 893 629 236 27 161 chr1 40409844 40410004 -156785428 - RMER2 LTR ERV1 -139 428 288 5 893 204 40 0 0 chr1 40410004 40410029 -156785403 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 893 629 191 134 99 chr1 40410029 40410219 -156785213 - RMER2 LTR ERV1 -280 287 1 5 893 445 207 0 157 chr1 40410406 40410578 -156784854 - RMER10B LTR ERVL -60 338 194 5 893 338 39 39 0 chr1 40410579 40410630 -156784802 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 893 333 140 0 17 chr1 40410641 40410699 -156784733 - B2_Mm2 SINE B2 -22 173 117 5 893 258 106 0 0 chr1 40410758 40410805 -156784627 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 893 821 248 108 5 chr1 40411942 40412137 -156783295 - B3 SINE B2 0 216 2 5 893 243 266 0 48 chr1 40414459 40414542 -156780890 + GA-rich Low_complexity Low_complexity 3 81 0 5 893 1103 180 209 67 chr1 40415177 40415564 -156779868 - RMER10A LTR ERVL 0 442 1 5 893 603 51 0 0 chr1 40417401 40417480 -156777952 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 893 263 230 149 0 chr1 40418032 40418106 -156777326 + B3 SINE B2 1 85 -131 5 893 255 103 0 0 chr1 40418938 40418977 -156776455 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 893 295 289 10 20 chr1 40420262 40420361 -156775071 + PB1D10 SINE Alu 18 115 -2 5 893 523 192 75 0 chr1 40420403 40420523 -156774909 - ORR1E LTR MaLR -223 136 8 5 893 213 39 0 0 chr1 40420860 40420886 -156774546 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 893 2083 129 70 13 chr1 40421287 40421673 -156773759 - RMER17C LTR ERVK -2 408 1 5 893 240 288 0 119 chr1 40423328 40423462 -156771970 - L1MB3 LINE L1 -219 5964 5847 6 893 21 36 0 0 chr1 40424372 40424400 -156771032 + AT_rich Low_complexity Low_complexity 1 28 0 6 893 339 332 107 39 chr1 40424962 40425272 -156770160 - MER44A DNA MER2_type -8 331 1 6 893 193 190 16 65 chr1 40425368 40425430 -156770002 - MIRm SINE MIR -139 137 79 6 893 4103 90 35 9 chr1 40426640 40427209 -156768223 - MT2B2 LTR ERVL 0 584 1 6 893 243 0 0 0 chr1 40427665 40427692 -156767740 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 893 644 287 193 4 chr1 40428436 40428696 -156766736 + Tigger7 DNA MER2_type 54 361 -2130 6 893 3295 21 50 0 chr1 40428696 40429073 -156766359 + MTA_Mm LTR MaLR 1 396 0 6 893 622 311 65 137 chr1 40429073 40429267 -156766165 + MER44B DNA MER2_type 299 469 -81 6 893 384 59 0 0 chr1 40429267 40429318 -156766114 + (TATG)n Simple_repeat Simple_repeat 2 52 0 6 893 622 311 65 137 chr1 40429318 40429388 -156766044 + MER44B DNA MER2_type 470 540 -10 6 893 727 292 46 86 chr1 40429581 40430012 -156765420 + L1MA4 LINE L1 5510 5923 -377 6 893 2220 142 256 24 chr1 40430368 40430864 -156764568 - RMER19C LTR ERVK 0 611 1 6 893 546 91 0 0 chr1 40430958 40431035 -156764397 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 893 1002 110 0 0 chr1 40431052 40431207 -156764225 + (CA)n Simple_repeat Simple_repeat 1 155 0 6 893 436 247 11 22 chr1 40431456 40431638 -156763794 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 893 533 90 11 0 chr1 40431639 40431728 -156763704 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 6 893 240 324 71 36 chr1 40431735 40431847 -156763585 + PB1D10 SINE Alu 1 116 -1 6 893 311 258 112 40 chr1 40433202 40433327 -156762105 + L1MA4A LINE L1 5794 5927 -376 6 893 257 292 0 27 chr1 40434964 40435038 -156760394 - Lx9 LINE L1 -452 7192 7121 6 893 278 261 34 47 chr1 40437144 40437242 -156758190 + Lx8 LINE L1 6473 6541 -932 6 893 310 289 97 21 chr1 40440789 40440934 -156754498 - B3A SINE B2 -26 172 17 6 893 1227 123 39 0 chr1 40441048 40441227 -156754205 + B2_Mm2 SINE B2 2 187 -8 6 893 347 198 34 34 chr1 40443423 40443601 -156751831 + (CATA)n Simple_repeat Simple_repeat 1 178 0 6 893 683 153 11 32 chr1 40443576 40443865 -156751567 + (CA)n Simple_repeat Simple_repeat 1 282 0 6 893 255 275 220 54 chr1 40444047 40444270 -156751162 - Lx8 LINE L1 -35 7438 7179 6 893 1258 98 40 0 chr1 40444674 40444848 -156750584 - B2_Mm2 SINE B2 -14 181 1 6 893 812 254 32 54 chr1 40445492 40445670 -156749762 - B3 SINE B2 0 216 38 6 893 2481 98 3 0 chr1 40445670 40445996 -156749436 + ORR1A2 LTR MaLR 1 327 0 6 893 812 254 32 54 chr1 40445996 40446038 -156749394 - B3 SINE B2 -179 37 1 6 893 583 303 98 3 chr1 40446057 40446251 -156749181 + MER2 DNA MER2_type 1 223 -122 6 893 477 34 0 0 chr1 40446251 40446310 -156749122 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 893 583 303 98 3 chr1 40446310 40446430 -156749002 + MER2 DNA MER2_type 224 345 0 6 893 507 33 0 0 chr1 40446985 40447046 -156748386 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 893 351 221 0 0 chr1 40447046 40447132 -156748300 + (CATA)n Simple_repeat Simple_repeat 2 87 0 6 893 434 315 50 91 chr1 40450599 40450840 -156744592 - MLT1B LTR MaLR -9 381 151 6 893 600 302 53 19 chr1 40450916 40451125 -156744307 - B3 SINE B2 0 216 1 6 893 421 268 79 6 chr1 40451189 40451354 -156744078 - Tigger7 DNA MER2_type -2020 471 295 6 893 686 224 49 0 chr1 40451519 40451662 -156743770 - Lx8 LINE L1 -514 6959 6810 6 893 419 0 0 19 chr1 40451662 40451707 -156743725 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 893 1455 39 0 0 chr1 40451707 40451885 -156743547 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 6 893 419 0 0 19 chr1 40451885 40451891 -156743541 + (GA)n Simple_repeat Simple_repeat 1 6 0 6 893 2841 127 4 22 chr1 40452758 40453218 -156742214 + RLTR11B LTR ERVK 1 452 -1 6 893 426 39 0 0 chr1 40453339 40453391 -156742041 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 893 346 226 69 0 chr1 40453428 40453530 -156741902 + ERVL-B4-int LTR ERVL 1 109 -5605 6 893 249 282 28 14 chr1 40453627 40453699 -156741733 + ORR1D2 LTR MaLR 1 73 -297 6 893 234 232 81 40 chr1 40453771 40453870 -156741562 + MLT1A1 LTR MaLR 1 103 -262 6 893 276 270 56 0 chr1 40453978 40454067 -156741365 + MLT1A1 LTR MaLR 302 395 -13 6 893 229 306 59 30 chr1 40454172 40454273 -156741159 - MIRb SINE MIR -58 210 107 6 893 2445 110 3 6 chr1 40455091 40455438 -156739994 - ORR1A1 LTR MaLR 0 346 1 6 893 687 257 84 65 chr1 40456092 40456354 -156739078 - B4 SINE B4 -14 278 12 6 893 252 0 0 0 chr1 40456489 40456517 -156738915 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 893 396 319 157 25 chr1 40457490 40457770 -156737662 - MER82 DNA MER2_type 0 653 337 6 893 280 328 184 21 chr1 40457797 40457987 -156737445 - MER82 DNA MER2_type -408 245 25 6 893 24 0 0 0 chr1 40459680 40459704 -156735728 + AT_rich Low_complexity Low_complexity 1 24 0 6 893 7532 61 15 8 chr1 40459769 40460721 -156734711 + L1_Mus1 LINE L1 5610 6567 0 6 893 189 213 0 0 chr1 40460859 40460906 -156734526 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 893 279 0 0 0 chr1 40462499 40462530 -156732902 + (T)n Simple_repeat Simple_repeat 1 31 0 6 893 198 0 0 0 chr1 40463514 40463536 -156731896 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 893 725 138 138 0 chr1 40463543 40463666 -156731766 - B1_Mur4 SINE Alu -8 142 3 6 893 519 318 68 19 chr1 40464327 40464593 -156730839 - MT2A LTR ERVL -24 509 231 6 893 369 174 0 0 chr1 40464593 40464662 -156730770 + (CCA)n Simple_repeat Simple_repeat 1 69 0 6 893 312 27 0 0 chr1 40464660 40464697 -156730735 + (CAG)n Simple_repeat Simple_repeat 1 37 0 6 893 477 0 0 0 chr1 40465017 40465070 -156730362 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 893 488 306 21 37 chr1 40465083 40465270 -156730162 - B3 SINE B2 -31 185 2 6 893 1439 258 88 48 chr1 40465277 40465819 -156729613 - MERVL_2A-int LTR ERVL -163 5594 5005 6 893 697 210 16 0 chr1 40466444 40466568 -156728864 - ETnERV2-int LTR ERVK -211 7195 7070 6 893 1368 281 30 53 chr1 40466660 40467152 -156728280 - MERVL_2A-int LTR ERVL -1007 4750 4270 6 893 503 240 32 0 chr1 40467255 40467380 -156728052 - MERVL_2A-int LTR ERVL -1658 4103 3975 6 893 242 361 8 16 chr1 40468018 40468139 -156727293 - MIR SINE MIR -89 173 54 6 893 8194 70 17 1 chr1 40468604 40469695 -156725737 + L1_Mus3 LINE L1 5530 6637 -1 6 893 253 324 6 33 chr1 40470117 40470359 -156725073 + (CATA)n Simple_repeat Simple_repeat 1 235 0 6 893 859 214 43 24 chr1 40472576 40472787 -156722645 + B3 SINE B2 2 216 0 6 893 237 98 0 0 chr1 40473209 40473250 -156722182 + (T)n Simple_repeat Simple_repeat 1 41 0 6 893 422 294 86 22 chr1 40473294 40473433 -156721999 + B3 SINE B2 37 184 -32 6 893 290 276 50 10 chr1 40473781 40473880 -156721552 + PB1D10 SINE Alu 14 116 -1 6 893 217 220 17 17 chr1 40475772 40475832 -156719600 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 893 202 143 24 0 chr1 40476186 40476228 -156719204 + T-rich Low_complexity Low_complexity 4 46 0 6 893 324 0 0 0 chr1 40476394 40476430 -156719002 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 893 877 99 0 7 chr1 40476431 40476573 -156718859 - Lx2 LINE L1 -20 6977 6837 6 893 1914 74 59 0 chr1 40476571 40476827 -156718605 + Lx2 LINE L1 6461 6731 -266 6 893 249 57 0 0 chr1 40476893 40476928 -156718504 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 6 893 705 225 171 20 chr1 40476949 40477194 -156718238 + B4 SINE B4 7 288 -4 6 893 712 172 8 0 chr1 40477293 40477415 -156718017 + B3 SINE B2 1 123 -93 6 893 546 189 0 0 chr1 40477993 40478173 -156717259 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 6 893 237 98 0 0 chr1 40478173 40478214 -156717218 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 893 1109 88 0 7 chr1 40478894 40479042 -156716390 - B1_Mus2 SINE Alu 0 147 1 6 893 3323 47 0 2 chr1 40479068 40479472 -156715960 - L1Md_F2 LINE L1 -3 6579 6177 6 893 210 231 0 0 chr1 40479494 40479533 -156715899 + C-rich Low_complexity Low_complexity 2 40 0 6 893 408 319 91 49 chr1 40479651 40480057 -156715375 - L1MD LINE L1 -2805 3341 2919 6 893 287 318 62 40 chr1 40480123 40480398 -156715034 - L1MD LINE L1 -3488 2658 2378 6 893 411 155 45 13 chr1 40480398 40480555 -156714877 + (TA)n Simple_repeat Simple_repeat 2 163 0 6 893 27 49 0 0 chr1 40480562 40480603 -156714829 + AT_rich Low_complexity Low_complexity 1 41 0 6 893 233 186 0 78 chr1 40481308 40481351 -156714081 + C-rich Low_complexity Low_complexity 21 60 0 6 893 1289 73 0 6 chr1 40481351 40481530 -156713902 + (TCTCC)n Simple_repeat Simple_repeat 2 179 0 6 893 233 186 0 78 chr1 40481530 40481550 -156713882 + C-rich Low_complexity Low_complexity 2 20 0 6 893 256 241 0 0 chr1 40482048 40482102 -156713330 - RMER12B LTR ERVK -194 1210 1157 6 893 369 0 0 0 chr1 40482102 40482143 -156713289 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 893 5874 129 54 101 chr1 40482143 40483396 -156712036 - RMER12B LTR ERVK -209 1195 1 6 893 414 296 113 0 chr1 40483650 40483792 -156711640 - RSINE1 SINE B4 -6 159 2 6 893 1821 207 22 25 chr1 40484385 40484791 -156710641 - MTD LTR MaLR -12 407 3 6 893 248 161 32 16 chr1 40485263 40485326 -156710106 + A-rich Low_complexity Low_complexity 5 68 0 6 893 261 303 0 0 chr1 40487345 40487411 -156708021 - ID4 SINE ID -15 68 3 6 893 468 153 0 0 chr1 40488010 40488095 -156707337 + CT-rich Low_complexity Low_complexity 2 86 0 6 893 401 239 0 11 chr1 40488117 40488210 -156707222 - PB1D10 SINE Alu 0 117 26 6 893 241 265 204 10 chr1 40489328 40489431 -156706001 - MTE2b LTR MaLR -256 123 1 6 893 316 263 129 53 chr1 40489872 40490081 -156705351 - MLT2C2 LTR ERVL -96 368 144 6 893 458 329 33 26 chr1 40490265 40490418 -156705014 + RSINE1 SINE B4 2 155 -10 6 893 425 318 122 48 chr1 40491362 40491921 -156703511 - L1ME2 LINE L1 -252 5912 5313 6 893 325 309 60 32 chr1 40492216 40492416 -156703016 - L1MD LINE L1 -1201 4945 4739 6 893 3209 11 8 0 chr1 40492416 40492780 -156702652 - L1Md_F3 LINE L1 -1 6583 6217 6 893 325 309 60 32 chr1 40492780 40492830 -156702602 - L1MD LINE L1 -1408 4738 4689 6 893 514 115 13 0 chr1 40493380 40493458 -156701974 + Lx5 LINE L1 6808 6886 -164 6 893 778 249 42 32 chr1 40493458 40493674 -156701758 + MTD LTR MaLR 202 419 0 7 893 282 239 159 35 chr1 40495673 40495786 -156699646 + MIR SINE MIR 31 157 -105 7 893 222 116 0 0 chr1 40497181 40497224 -156698208 + (T)n Simple_repeat Simple_repeat 1 43 0 7 893 243 322 8 48 chr1 40498925 40499049 -156696383 + MIRb SINE MIR 112 230 -38 7 893 372 126 11 22 chr1 40499874 40499963 -156695469 + CT-rich Low_complexity Low_complexity 3 90 0 7 894 2962 113 22 7 chr1 40502092 40502536 -156692896 - Lx2 LINE L1 0 6997 6547 1 894 613 0 13 13 chr1 40503080 40503158 -156692274 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 2 894 298 218 299 0 chr1 40503158 40503245 -156692187 - B1_Mur2 SINE Alu -11 138 26 3 894 281 315 0 22 chr1 40504386 40504477 -156690955 - B1_Mus1 SINE Alu -52 96 8 4 894 869 298 123 35 chr1 40507671 40508151 -156687281 + MER44B DNA MER2_type 29 550 0 5 894 522 0 0 0 chr1 40508284 40508342 -156687090 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 6 894 31 0 0 0 chr1 40508938 40508969 -156686463 + AT_rich Low_complexity Low_complexity 1 31 0 7 894 218 56 0 27 chr1 40509161 40509198 -156686234 + (TTATA)n Simple_repeat Simple_repeat 2 37 0 8 894 38329 62 4 8 chr1 40509203 40515419 -156680013 - L1Md_F3 LINE L1 -12 6575 226 9 894 230 253 0 39 chr1 40515424 40515502 -156679930 + (TTATA)n Simple_repeat Simple_repeat 3 77 0 1 894 427 171 12 0 chr1 40515659 40515741 -156679691 - B1F2 SINE Alu -3 146 64 1 894 516 247 85 20 chr1 40515805 40515958 -156679474 - RSINE1 SINE B4 0 165 3 1 894 226 247 117 31 chr1 40516151 40516314 -156679118 - Lx9 LINE L1 -8 7636 7460 1 894 372 214 17 8 chr1 40516317 40516435 -156678997 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 894 351 0 0 0 chr1 40516472 40516511 -156678921 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 894 25 0 0 0 chr1 40516588 40516613 -156678819 + AT_rich Low_complexity Low_complexity 1 25 0 1 894 1037 225 82 55 chr1 40516703 40517032 -156678400 - Lx9 LINE L1 -303 7341 7004 1 894 1163 68 0 0 chr1 40517234 40517381 -156678051 - B1_Mus1 SINE Alu 0 148 2 1 894 982 174 39 15 chr1 40519255 40519459 -156675973 - Lx2 LINE L1 -1 6996 6788 1 894 1171 55 0 7 chr1 40519504 40519652 -156675780 - B1_Mus2 SINE Alu 0 147 1 1 894 27 0 0 0 chr1 40520235 40520262 -156675170 + AT_rich Low_complexity Low_complexity 1 27 0 2 894 686 108 9 9 chr1 40521562 40521674 -156673758 + B1_Mur4 SINE Alu 36 147 -3 2 894 199 203 0 33 chr1 40521704 40521765 -156673667 + GA-rich Low_complexity Low_complexity 2 60 0 2 894 241 213 103 40 chr1 40522004 40522145 -156673287 - L1M3 LINE L1 -2131 4015 3873 2 894 207 100 0 0 chr1 40522885 40522915 -156672517 + (TTC)n Simple_repeat Simple_repeat 2 31 0 2 894 393 22 0 0 chr1 40523216 40523262 -156672170 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 894 498 17 0 0 chr1 40523642 40523701 -156671731 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 894 249 119 0 0 chr1 40524411 40524453 -156670979 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 894 213 65 0 0 chr1 40525527 40525558 -156669874 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 894 185 341 53 30 chr1 40526055 40526188 -156669244 - MIR SINE MIR -97 165 30 2 894 237 33 0 0 chr1 40527772 40527802 -156667630 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 894 318 149 23 11 chr1 40527940 40528028 -156667404 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 894 535 125 19 0 chr1 40528093 40528197 -156667235 + (CA)n Simple_repeat Simple_repeat 2 107 0 3 894 1214 68 0 0 chr1 40529028 40529175 -156666257 - B1_Mm SINE Alu 0 147 1 3 894 878 152 0 6 chr1 40531958 40532117 -156663315 + (TA)n Simple_repeat Simple_repeat 1 158 0 3 894 516 136 0 0 chr1 40532406 40532494 -156662938 + (GA)n Simple_repeat Simple_repeat 2 89 0 3 894 549 299 44 3 chr1 40533146 40533338 -156662094 + B3A SINE B2 8 207 -9 3 894 235 248 9 18 chr1 40533474 40533585 -156661847 + CT-rich Low_complexity Low_complexity 1 110 0 3 894 214 263 18 0 chr1 40533599 40533656 -156661776 - ID SINE ID -151 73 16 3 894 360 0 0 0 chr1 40534222 40534262 -156661170 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 894 813 30 0 0 chr1 40537419 40537519 -156657913 + (TC)n Simple_repeat Simple_repeat 2 101 0 4 894 499 286 52 31 chr1 40538847 40539038 -156656394 - MLT1D LTR MaLR -13 492 298 4 894 573 55 0 0 chr1 40539095 40539168 -156656264 + (TCC)n Simple_repeat Simple_repeat 2 74 0 4 894 1200 111 0 0 chr1 40539168 40539348 -156656084 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 894 600 303 65 25 chr1 40539615 40539893 -156655539 - B4A SINE B4 -1 291 3 4 894 765 276 129 19 chr1 40540571 40540896 -156654536 - MER44B DNA MER2_type -36 514 154 4 894 1304 127 51 5 chr1 40541575 40541789 -156653643 - URR1A DNA MER1_type -2 224 1 4 894 699 309 36 12 chr1 40542125 40542374 -156653058 + RCHARR1 DNA MER1_type 1 255 -719 4 894 337 256 0 86 chr1 40542398 40542595 -156652837 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 894 2168 250 57 54 chr1 40542608 40543348 -156652084 + RCHARR1 DNA MER1_type 212 953 -21 4 894 283 206 59 0 chr1 40544542 40544610 -156650822 - ORR1C1 LTR MaLR 0 394 323 4 894 2721 88 8 11 chr1 40544613 40544992 -156650440 - Lx LINE L1 -610 6044 5667 5 894 3618 82 58 15 chr1 40544992 40545513 -156649919 + Lx LINE L1 6105 6647 -7 5 894 1334 180 101 7 chr1 40545515 40545614 -156649818 - ORR1C1 LTR MaLR -65 313 214 4 894 1289 51 6 0 chr1 40545614 40545792 -156649640 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 894 1334 180 101 7 chr1 40545792 40545978 -156649454 - ORR1C1 LTR MaLR -165 213 1 4 894 686 224 49 12 chr1 40547382 40547545 -156647887 - B3 SINE B2 -46 170 2 5 894 198 0 0 0 chr1 40547876 40547898 -156647534 + (T)n Simple_repeat Simple_repeat 1 22 0 5 894 271 0 25 25 chr1 40548341 40548381 -156647051 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 894 273 57 0 0 chr1 40548622 40548657 -156646775 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 894 419 208 0 14 chr1 40548956 40549102 -156646330 + (TCTG)n Simple_repeat Simple_repeat 3 146 0 5 894 428 206 93 0 chr1 40549102 40549209 -156646223 - PB1 SINE Alu -8 119 3 5 894 216 0 0 0 chr1 40549658 40549682 -156645750 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 894 865 232 66 0 chr1 40550261 40550459 -156644973 - B3 SINE B2 -5 211 1 5 894 399 21 0 0 chr1 40551997 40552045 -156643387 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 894 267 183 67 0 chr1 40552069 40552129 -156643303 - Lx9 LINE L1 -65 7579 7516 6 894 426 39 0 0 chr1 40552361 40552413 -156643019 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 894 293 326 0 0 chr1 40553042 40553128 -156642304 + B4A SINE B4 203 288 -4 6 894 487 263 3 12 chr1 40553169 40553504 -156641928 + GA-rich Low_complexity Low_complexity 1 331 0 6 894 403 257 17 17 chr1 40553518 40553692 -156641740 + GA-rich Low_complexity Low_complexity 3 176 0 6 894 669 249 0 4 chr1 40553708 40553954 -156641478 + GA-rich Low_complexity Low_complexity 1 244 0 6 894 327 203 0 0 chr1 40554016 40554090 -156641342 + GA-rich Low_complexity Low_complexity 1 74 0 6 894 27 29 0 0 chr1 40554511 40554545 -156640887 + AT_rich Low_complexity Low_complexity 1 34 0 6 894 184 298 18 0 chr1 40554840 40554897 -156640535 + MIR SINE MIR 66 123 -139 6 894 973 160 158 10 chr1 40555777 40555973 -156639459 + URR1B DNA MER1_type 1 225 0 6 894 705 169 0 0 chr1 40556901 40557061 -156638371 + (CA)n Simple_repeat Simple_repeat 1 160 0 6 894 456 86 0 0 chr1 40557192 40557262 -156638170 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 894 1411 265 181 42 chr1 40557884 40558653 -156636779 - Lx8 LINE L1 -2 7471 6596 7 894 354 235 117 10 chr1 40559472 40559575 -156635857 + B1F SINE Alu 18 131 -18 7 894 439 277 63 46 chr1 40560238 40560412 -156635020 + B4A SINE B4 84 260 -32 7 894 238 269 15 15 chr1 40560412 40560507 -156634925 + (CA)n Simple_repeat Simple_repeat 1 95 0 7 894 249 258 0 16 chr1 40561818 40561881 -156633551 + G-rich Low_complexity Low_complexity 1 62 0 7 894 3516 62 24 4 chr1 40562129 40562580 -156632852 + L1Md_F2 LINE L1 6111 6570 -12 7 894 545 163 0 0 chr1 40562589 40562675 -156632757 + L1Md_F2 LINE L1 168 253 -6363 7 894 33201 75 8 4 chr1 40562675 40567488 -156627944 + L1Md_F2 LINE L1 766 5585 -298 7 894 7821 65 2 6 chr1 40567489 40568488 -156626944 + L1Md_F2 LINE L1 5587 6581 -1 7 894 322 328 106 28 chr1 40568868 40569188 -156626244 - L1MC4a LINE L1 -2018 5864 5520 7 894 4929 147 50 8 chr1 40569512 40570771 -156624661 + Lx5 LINE L1 5086 6406 -644 7 894 28 0 0 0 chr1 40570858 40570886 -156624546 + AT_rich Low_complexity Low_complexity 1 28 0 7 894 249 33 0 0 chr1 40571620 40571650 -156623782 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 8 894 222 118 0 0 chr1 40572098 40572132 -156623300 + (GGA)n Simple_repeat Simple_repeat 3 36 0 8 894 500 305 119 19 chr1 40573762 40574133 -156621299 - L1M2 LINE L1 -3438 2705 2298 8 894 584 242 335 8 chr1 40574199 40574465 -156620967 + ORR1D2 LTR MaLR 4 356 -14 8 894 221 0 0 33 chr1 40574486 40574516 -156620916 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 894 238 356 17 0 chr1 40574534 40574649 -156620783 - L1M2 LINE L1 -3897 2246 2130 8 894 399 110 0 0 chr1 40574848 40574921 -156620511 - L1_Mus3 LINE L1 0 6638 6566 8 894 243 0 0 0 chr1 40575100 40575127 -156620305 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 894 329 322 47 6 chr1 40575127 40575291 -156620141 - L1_Mur1 LINE L1 -4130 1756 1586 8 894 276 55 0 69 chr1 40575751 40575809 -156619623 + (TTAA)n Simple_repeat Simple_repeat 3 56 0 8 894 365 58 0 19 chr1 40575834 40575887 -156619545 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 8 894 961 150 0 11 chr1 40575887 40576069 -156619363 + CT-rich Low_complexity Low_complexity 1 180 0 9 894 1131 124 0 0 chr1 40576084 40576261 -156619171 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 9 894 324 0 0 0 chr1 40576263 40576299 -156619133 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 9 894 11777 31 0 1 chr1 40576441 40578473 -156616959 - L1Md_T LINE L1 0 6582 4552 9 894 257 111 0 0 chr1 40578735 40578771 -156616661 + U2 snRNA snRNA 1 36 -152 9 894 330 213 27 54 chr1 40579834 40580018 -156615414 + (CTG)n Simple_repeat Simple_repeat 2 180 0 9 894 692 124 8 0 chr1 40582841 40582962 -156612470 - ORR1D1 LTR MaLR -252 122 1 9 894 1691 98 104 66 chr1 40583037 40583354 -156612078 + ORR1A4 LTR MaLR 1 329 0 9 894 3235 127 37 9 chr1 40583354 40583924 -156611508 + ORR1A4-int LTR MaLR 1 586 -1377 9 894 1680 107 0 132 chr1 40583910 40584265 -156611167 - ORR1A4 LTR MaLR -20 309 2 9 894 185 301 24 103 chr1 40584354 40584480 -156610952 - L3 LINE CR1 -751 3738 3623 9 894 613 199 45 34 chr1 40584538 40584715 -156610717 - Lx7 LINE L1 0 7696 7518 1 894 321 363 45 32 chr1 40584897 40585210 -156610222 - L3 LINE CR1 -1017 3472 3156 9 894 184 325 78 9 chr1 40586691 40586806 -156608626 + MIRc SINE MIR 33 155 -113 1 894 987 129 12 0 chr1 40588903 40589066 -156606366 - URR1B DNA MER1_type -9 216 52 1 894 4127 136 89 103 chr1 40589336 40590255 -156605177 - RMER17A2 LTR ERVK 0 906 1 1 894 2391 105 3 3 chr1 40591032 40591358 -156604074 - ORR1A2 LTR MaLR -1 326 1 1 894 444 271 50 0 chr1 40591666 40591806 -156603626 - B1F SINE Alu -1 148 2 1 894 222 233 0 0 chr1 40593085 40593145 -156602287 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 894 731 289 26 63 chr1 40593149 40593452 -156601980 - B4 SINE B4 0 292 1 1 894 345 100 0 0 chr1 40593513 40593563 -156601869 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 1 894 1726 42 5 0 chr1 40593587 40593802 -156601630 - L1Md_T LINE L1 0 6582 6367 1 894 519 60 0 0 chr1 40594873 40594940 -156600492 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 1 894 228 284 22 33 chr1 40595012 40595103 -156600329 + RMER5 LTR ERV1 33 122 -412 1 894 1296 275 50 27 chr1 40595129 40595611 -156599821 - RMER5 LTR ERV1 -9 525 33 1 894 396 0 0 0 chr1 40595624 40595668 -156599764 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 894 300 131 39 39 chr1 40596328 40596431 -156599001 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 1 894 216 0 0 0 chr1 40596640 40596664 -156598768 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1 894 498 249 254 0 chr1 40596664 40596833 -156598599 - ID_B1 SINE B4 -9 215 4 1 894 420 104 0 0 chr1 40598123 40598190 -156597242 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 894 735 325 46 27 chr1 40598195 40598457 -156596975 - B4 SINE B4 -4 288 22 1 894 649 219 6 12 chr1 40600167 40600499 -156594933 + CT-rich Low_complexity Low_complexity 1 329 0 1 894 573 28 0 0 chr1 40601334 40601405 -156594027 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 894 7250 45 0 0 chr1 40601865 40602726 -156592706 - L1Md_T LINE L1 0 6582 5722 1 894 234 389 35 21 chr1 40606533 40606675 -156588757 - Tigger5 DNA MER2_type -2174 232 89 1 894 1798 201 58 15 chr1 40608208 40608608 -156586824 + MTD LTR MaLR 3 419 0 1 894 229 298 159 34 chr1 40609282 40609515 -156585917 + L1MD2 LINE L1 614 875 -5672 1 894 708 204 0 14 chr1 40609524 40609663 -156585769 + B1_Mur2 SINE Alu 13 149 0 1 894 3505 15 2 10 chr1 40609710 40610109 -156585323 - MTA_Mm LTR MaLR 0 396 1 1 894 9191 36 5 1 chr1 40610109 40611203 -156584229 - MTA_Mm-int LTR MaLR 0 1098 1 1 894 3512 15 2 10 chr1 40611203 40611602 -156583830 - MTA_Mm LTR MaLR 0 396 1 1 894 299 301 119 65 chr1 40611744 40611799 -156583633 + B4A SINE B4 1 53 -239 1 894 2152 188 39 5 chr1 40611799 40612206 -156583226 + MTC LTR MaLR 1 421 0 1 894 299 301 119 65 chr1 40612206 40612335 -156583097 + B4A SINE B4 54 195 -97 1 894 417 66 0 0 chr1 40612361 40612422 -156583010 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 894 208 231 0 37 chr1 40612488 40612542 -156582890 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 894 317 268 163 79 chr1 40612823 40613017 -156582415 + L1MB1 LINE L1 5788 5998 -170 1 894 369 147 0 138 chr1 40613615 40613702 -156581730 - MTC LTR MaLR -243 178 104 1 894 2806 63 8 0 chr1 40613705 40614068 -156581364 + L1_Mur1 LINE L1 4246 4611 -1275 1 894 2087 73 3 20 chr1 40614065 40614328 -156581104 - L1_Mur1 LINE L1 -981 4905 4645 1 894 207 0 0 0 chr1 40614328 40614351 -156581081 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 894 2087 73 3 20 chr1 40614351 40614380 -156581052 - L1_Mur1 LINE L1 -1242 4644 4618 1 894 894 178 118 5 chr1 40614380 40614566 -156580866 + MT2B LTR ERVL 53 259 -342 1 894 270 227 67 11 chr1 40614504 40614593 -156580839 + RLTR25B LTR ERVK 442 535 -493 1 894 5817 79 12 35 chr1 40615045 40615872 -156579560 + L1_Mus3 LINE L1 5824 6631 -7 1 894 369 104 39 0 chr1 40616159 40616236 -156579196 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 894 2137 162 58 42 chr1 40616236 40617002 -156578430 + ORR1A4-int LTR MaLR 724 1509 0 1 894 1660 152 15 68 chr1 40617002 40617341 -156578091 + ORR1A4 LTR MaLR 1 321 -8 1 894 1078 152 95 26 chr1 40617355 40617611 -156577821 + ORR1A4 LTR MaLR 10 378 0 1 894 292 237 122 29 chr1 40617621 40617760 -156577672 + L1MD LINE L1 3811 3962 -2184 1 894 1742 142 14 0 chr1 40617865 40618154 -156577278 + ORR1A3 LTR MaLR 1 293 -33 1 894 666 95 0 0 chr1 40618148 40618243 -156577189 + B1_Mus2 SINE Alu 52 146 -1 1 894 207 0 0 0 chr1 40618256 40618279 -156577153 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 894 375 91 0 0 chr1 40618279 40618334 -156577098 + ORR1A3 LTR MaLR 340 394 0 1 894 253 289 22 11 chr1 40618798 40618889 -156576543 + L1MC LINE L1 5077 5168 -978 1 894 286 174 0 30 chr1 40618988 40619089 -156576343 + CT-rich Low_complexity Low_complexity 2 99 0 1 894 1050 144 0 0 chr1 40619093 40619273 -156576159 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 894 662 316 0 15 chr1 40619631 40619827 -156575605 + MTD LTR MaLR 5 197 -222 1 894 447 152 51 25 chr1 40619848 40619971 -156575461 - ORR1A4 LTR MaLR -219 175 6 1 894 896 209 11 5 chr1 40619968 40620176 -156575256 + MTD LTR MaLR 208 405 -14 1 894 689 269 44 78 chr1 40620357 40620769 -156574663 + RMER2 LTR ERV1 1 540 -27 1 894 639 178 0 0 chr1 40621400 40621535 -156573897 + (TG)n Simple_repeat Simple_repeat 1 135 0 1 894 1366 95 21 0 chr1 40621578 40621768 -156573664 + B2_Mm2 SINE B2 1 194 -1 1 894 242 319 56 72 chr1 40622076 40622201 -156573231 + MLT1A0 LTR MaLR 5 127 -281 1 894 723 228 0 0 chr1 40622249 40622429 -156573003 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 894 209 163 20 0 chr1 40622442 40622491 -156572941 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 894 356 268 36 0 chr1 40622600 40622712 -156572720 - B4A SINE B4 -174 118 3 1 894 404 300 66 13 chr1 40622776 40622928 -156572504 + MLT1A0 LTR MaLR 206 365 0 1 894 9923 52 0 1 chr1 40623681 40624890 -156570542 + L1_Mm LINE L1 4380 5616 -2169 1 894 8318 40 3 4 chr1 40624890 40625886 -156569546 + L1Md_F2 LINE L1 5588 6582 0 1 894 1220 257 35 18 chr1 40625886 40625926 -156569506 + L1_Mm LINE L1 5617 5664 -2121 1 894 180 0 0 0 chr1 40627029 40627049 -156568383 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 894 650 284 29 55 chr1 40627071 40627316 -156568116 + MTEa LTR MaLR 9 249 -130 1 894 253 338 0 0 chr1 40627489 40627569 -156567863 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 894 1491 156 114 71 chr1 40627571 40627992 -156567440 + RMER17B LTR ERVK 1 439 -519 1 894 1463 210 183 47 chr1 40628017 40628569 -156566863 + RMER13B LTR ERVK 278 904 -4 1 894 662 317 16 24 chr1 40628637 40628883 -156566549 + B4A SINE B4 29 272 -20 1 894 23 54 0 0 chr1 40629320 40629357 -156566075 + AT_rich Low_complexity Low_complexity 1 37 0 1 894 792 228 11 26 chr1 40629800 40629989 -156565443 + B3 SINE B2 2 187 -29 1 894 25 31 0 0 chr1 40630070 40630102 -156565330 + AT_rich Low_complexity Low_complexity 1 32 0 1 894 579 238 8 8 chr1 40630193 40630316 -156565116 - B1_Mur1 SINE Alu -1 148 26 1 894 1311 82 386 0 chr1 40630455 40630678 -156564754 - Lx3_Mus LINE L1 -669 6340 6032 1 894 4318 81 59 16 chr1 40630678 40631291 -156564141 + Lx3_Mus LINE L1 6353 6989 -20 1 894 282 29 0 0 chr1 40631291 40631326 -156564106 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 894 4318 81 59 16 chr1 40631326 40631342 -156564090 + Lx3_Mus LINE L1 6990 7008 -1 1 894 2766 139 19 12 chr1 40631538 40632018 -156563414 + RLTR19A LTR ERVK 14 496 0 1 111 1754 129 34 0 chr1 40632088 40632383 -156563049 - RMER6C LTR ERVK -385 305 1 1 895 215 103 26 0 chr1 40632663 40632702 -156562730 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 1 895 2175 91 3 10 chr1 40633570 40633882 -156561550 + L1Md_F2 LINE L1 6273 6582 0 1 895 194 81 27 0 chr1 40633956 40633993 -156561439 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 895 385 308 53 12 chr1 40634873 40635044 -156560388 - L1M4 LINE L1 -1863 4283 4106 1 895 247 83 0 0 chr1 40635166 40635202 -156560230 - Lx4A LINE L1 -2 7056 7021 1 895 360 0 0 0 chr1 40635204 40635244 -156560188 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 895 1330 137 29 70 chr1 40635245 40635488 -156559944 - Lx4A LINE L1 -6 7052 6820 1 895 1451 55 22 0 chr1 40635852 40636034 -156559398 + B2_Mm2 SINE B2 3 188 -7 1 895 284 120 0 20 chr1 40636226 40636277 -156559155 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 895 238 297 77 0 chr1 40636650 40636741 -156558691 + MER94 DNA AcHobo 20 117 -17 1 895 909 66 0 0 chr1 40637959 40638081 -156557351 - L1_Mus1 LINE L1 -1 6566 6445 1 895 2027 152 84 40 chr1 40639683 40640086 -156555346 - MTC LTR MaLR 0 421 1 1 895 381 286 26 43 chr1 40640352 40640469 -156554963 + RCHARR1 DNA MER1_type 40 154 -820 1 895 703 119 32 0 chr1 40640509 40640635 -156554797 + URR1B DNA MER1_type 88 217 -8 1 895 261 0 0 0 chr1 40641489 40641518 -156553914 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 895 328 301 0 0 chr1 40642377 40642460 -156552972 - LTR53 LTR ERVL 0 519 437 1 895 1020 210 26 15 chr1 40642524 40642764 -156552668 - ORR1D1 LTR MaLR -113 246 1 1 895 459 0 0 0 chr1 40643356 40643407 -156552025 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 895 28 0 0 0 chr1 40644306 40644334 -156551098 + AT_rich Low_complexity Low_complexity 1 28 0 1 895 218 172 105 82 chr1 40644688 40644859 -156550573 + (CTCTG)n Simple_repeat Simple_repeat 1 175 0 1 895 476 122 37 18 chr1 40648228 40648337 -156547095 + (TATATG)n Simple_repeat Simple_repeat 1 111 0 1 895 2505 302 46 59 chr1 40648340 40648497 -156546935 - Lx9 LINE L1 -127 7517 7345 1 895 584 50 12 0 chr1 40648497 40648577 -156546855 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 895 2505 302 46 59 chr1 40648577 40649534 -156545898 - Lx9 LINE L1 -300 7344 6418 1 895 2733 78 53 23 chr1 40649534 40649929 -156545503 - MTB_Mm LTR MaLR 0 407 1 1 895 510 294 12 30 chr1 40650049 40650214 -156545218 - B3A SINE B2 -36 162 1 1 895 453 103 0 0 chr1 40650281 40650349 -156545083 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 1 895 389 320 122 46 chr1 40651274 40651399 -156544033 + L1M5 LINE L1 2317 2452 -3694 1 895 1092 70 0 34 chr1 40651399 40651546 -156543886 + B1_Mm SINE Alu 1 142 -5 1 895 389 320 122 46 chr1 40651546 40652094 -156543338 + L1M5 LINE L1 2453 3041 -3105 1 895 1170 56 0 7 chr1 40652098 40652243 -156543189 + B1_Mus1 SINE Alu 5 148 0 2 895 182 33 0 62 chr1 40652243 40652275 -156543157 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 2 895 23 33 0 0 chr1 40652367 40652397 -156543035 + AT_rich Low_complexity Low_complexity 1 30 0 2 895 578 299 21 9 chr1 40652412 40652645 -156542787 + L1MD LINE L1 3562 3797 -2349 2 895 22 0 0 0 chr1 40652796 40652818 -156542614 + AT_rich Low_complexity Low_complexity 1 22 0 2 895 616 262 128 0 chr1 40652818 40653005 -156542427 - B3 SINE B2 -3 213 3 2 895 1122 62 0 14 chr1 40653447 40653595 -156541837 + B1_Mm SINE Alu 2 147 0 2 895 225 138 0 65 chr1 40653595 40653648 -156541784 + A-rich Low_complexity Low_complexity 9 59 0 2 895 21 0 0 0 chr1 40654583 40654604 -156540828 + AT_rich Low_complexity Low_complexity 1 21 0 2 895 270 0 0 0 chr1 40655159 40655189 -156540243 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 895 3598 15 2 0 chr1 40655277 40655672 -156539760 + MTA_Mm LTR MaLR 1 396 0 2 895 412 232 220 23 chr1 40655899 40656072 -156539360 - MTEa LTR MaLR -172 207 1 2 895 609 27 0 0 chr1 40656125 40656200 -156539232 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 2 895 239 233 0 143 chr1 40656202 40656272 -156539160 + ID4_ SINE ID 2 61 -22 2 895 2766 60 184 3 chr1 40656758 40657127 -156538305 + RLTR10C LTR ERVK 1 436 0 2 895 261 253 108 0 chr1 40657128 40657211 -156538221 - LTR41B LTR ERVL -579 179 88 2 895 425 172 162 0 chr1 40658181 40658280 -156537152 + B1_Mur2 SINE Alu 1 115 -34 2 895 390 42 0 0 chr1 40658291 40658339 -156537093 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 895 351 187 52 35 chr1 40658445 40658617 -156536815 + (CACAC)n Simple_repeat Simple_repeat 2 176 0 2 895 216 97 0 0 chr1 40659069 40659100 -156536332 + (T)n Simple_repeat Simple_repeat 1 31 0 2 895 332 172 22 43 chr1 40659254 40659492 -156535940 + (TG)n Simple_repeat Simple_repeat 1 232 0 2 895 741 269 42 4 chr1 40660415 40660654 -156534778 + B4A SINE B4 1 248 -44 2 895 588 29 0 0 chr1 40660687 40660757 -156534675 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 895 486 124 0 0 chr1 40660757 40660845 -156534587 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 895 258 32 0 0 chr1 40660910 40660941 -156534491 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 2 895 382 161 411 0 chr1 40660941 40661065 -156534367 - Lx5 LINE L1 -10 7040 6866 2 895 252 0 0 0 chr1 40661239 40661267 -156534165 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 895 255 61 0 0 chr1 40661267 40661299 -156534133 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 895 21 36 0 0 chr1 40661301 40661329 -156534103 + AT_rich Low_complexity Low_complexity 1 28 0 2 895 22 35 0 0 chr1 40661347 40661376 -156534056 + AT_rich Low_complexity Low_complexity 1 29 0 2 895 577 170 0 0 chr1 40661415 40661521 -156533911 + B3 SINE B2 21 126 -90 2 895 251 114 23 0 chr1 40661548 40661592 -156533840 + (CATA)n Simple_repeat Simple_repeat 4 48 0 2 895 21 36 0 0 chr1 40661615 40661643 -156533789 + AT_rich Low_complexity Low_complexity 1 28 0 2 895 392 130 14 0 chr1 40662083 40662152 -156533280 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 2 895 203 158 0 0 chr1 40662152 40662190 -156533242 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 895 183 114 0 0 chr1 40663249 40663284 -156532148 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 895 710 186 6 3 chr1 40663303 40663661 -156531771 + (CA)n Simple_repeat Simple_repeat 1 359 0 2 895 21 0 0 0 chr1 40664816 40664837 -156530595 + AT_rich Low_complexity Low_complexity 1 21 0 2 895 277 275 12 0 chr1 40664837 40664917 -156530515 - MLT1D LTR MaLR -12 493 413 2 895 478 288 35 6 chr1 40665144 40665315 -156530117 - MLT2C1 LTR ERVL -209 188 13 2 895 470 356 0 6 chr1 40665493 40665758 -156529674 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 895 386 242 40 0 chr1 40666221 40666320 -156529112 + PB1D9 SINE Alu 12 114 -6 2 895 283 214 141 33 chr1 40666590 40666682 -156528750 + U13_ snRNA snRNA 6 107 -1 2 895 336 48 0 0 chr1 40667054 40667096 -156528336 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 895 383 0 21 0 chr1 40668391 40668438 -156526994 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 895 216 0 0 0 chr1 40668782 40668806 -156526626 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 895 265 316 0 10 chr1 40670890 40670986 -156524446 - MER96B DNA hAT -182 235 141 2 895 357 138 55 0 chr1 40670990 40671099 -156524333 + (TCTG)n Simple_repeat Simple_repeat 4 118 0 2 895 634 281 6 24 chr1 40672340 40672504 -156522928 + RSINE1 SINE B4 3 163 -2 2 895 692 267 56 0 chr1 40672562 40672723 -156522709 + ID_B1 SINE B4 2 171 -53 2 895 453 208 73 0 chr1 40672642 40672738 -156522694 + PB1D10 SINE Alu 6 108 -9 2 895 207 69 0 0 chr1 40674162 40674191 -156521241 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 895 909 267 52 52 chr1 40674988 40675336 -156520096 - MTE2a LTR MaLR -31 348 1 2 895 25 31 0 0 chr1 40675592 40675624 -156519808 + AT_rich Low_complexity Low_complexity 1 32 0 2 895 445 308 14 7 chr1 40677100 40677244 -156518188 + MTD LTR MaLR 1 145 -274 2 895 1551 203 60 21 chr1 40677475 40677860 -156517572 - MTD LTR MaLR -31 388 18 2 895 846 148 148 0 chr1 40678454 40678616 -156516816 - URR1A DNA MER1_type 0 226 41 2 895 207 0 0 0 chr1 40678994 40679017 -156516415 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 895 1169 63 0 0 chr1 40679020 40679162 -156516270 - B1_Mus1 SINE Alu -6 142 1 2 895 423 217 0 0 chr1 40679403 40679509 -156515923 + (CA)n Simple_repeat Simple_repeat 1 106 0 2 895 351 254 0 0 chr1 40679749 40679871 -156515561 + C-rich Low_complexity Low_complexity 4 125 0 2 895 799 240 172 0 chr1 40683050 40683271 -156512161 + Lx8 LINE L1 7075 7333 -140 2 895 200 35 35 0 chr1 40683301 40683330 -156512102 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 895 238 289 22 22 chr1 40683755 40683847 -156511585 + L1MB3 LINE L1 6061 6152 -31 2 895 408 40 0 0 chr1 40683848 40683898 -156511534 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 895 727 250 42 0 chr1 40685039 40685231 -156510201 + MER2 DNA MER2_type 97 296 -49 2 895 420 228 139 0 chr1 40685642 40685743 -156509689 + PB1D7 SINE Alu 1 115 -5 2 895 561 309 101 24 chr1 40688818 40689116 -156506316 - MER44A DNA MER2_type -8 331 11 2 895 1855 197 80 3 chr1 40693272 40693659 -156501773 - MTC LTR MaLR 0 421 5 2 895 1009 261 126 16 chr1 40693661 40694098 -156501334 - MER31A LTR ERV1 0 485 1 2 895 258 324 67 10 chr1 40694149 40694358 -156501074 - LTR37A LTR ERV1 -17 409 189 2 895 674 248 142 28 chr1 40695220 40695473 -156499959 + RMER15 LTR ERVL 294 575 0 2 895 1017 271 129 4 chr1 40695552 40696086 -156499346 + RMER15-int LTR ERVL 1013 1613 -3386 2 895 365 256 0 0 chr1 40696101 40696191 -156499241 + PB1D10 SINE Alu 28 117 0 2 895 582 265 132 5 chr1 40696924 40697121 -156498311 - ID_B1 SINE B4 -1 223 2 2 895 1799 311 8 27 chr1 40697337 40697939 -156497493 - Lx8 LINE L1 -530 6943 6353 2 895 225 0 0 0 chr1 40698067 40698092 -156497340 + (T)n Simple_repeat Simple_repeat 1 25 0 2 895 501 17 0 0 chr1 40698299 40698357 -156497075 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 895 225 0 0 0 chr1 40698357 40698381 -156497051 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 895 21 71 0 0 chr1 40699077 40699119 -156496313 + AT_rich Low_complexity Low_complexity 1 42 0 2 895 1182 229 143 16 chr1 40699314 40699678 -156495754 - MTD LTR MaLR 0 419 10 2 895 450 0 0 0 chr1 40699993 40700043 -156495389 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 895 482 301 80 11 chr1 40700076 40700251 -156495181 - B3A SINE B2 -11 187 1 2 895 547 249 50 102 chr1 40700379 40700607 -156494825 - ORR1D2 LTR MaLR -13 366 128 2 895 542 204 58 0 chr1 40700714 40700817 -156494615 - ORR1D2 LTR MaLR -226 144 36 2 895 7422 72 6 1 chr1 40701497 40702440 -156492992 + L1_Mus1 LINE L1 5619 6566 -1 2 895 784 294 79 32 chr1 40702626 40703097 -156492335 - L1MA5 LINE L1 -331 5969 5477 2 895 225 211 25 38 chr1 40703117 40703196 -156492236 - Lx8 LINE L1 -3 7470 7393 2 895 661 300 0 0 chr1 40703249 40703409 -156492023 - Lx8 LINE L1 -765 6708 6549 2 895 787 356 36 29 chr1 40703500 40703914 -156491518 + MTD LTR MaLR 3 419 0 2 895 465 330 65 22 chr1 40703930 40704333 -156491099 - L1MA5 LINE L1 -766 5377 4958 2 895 189 132 0 0 chr1 40704457 40704495 -156490937 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 2 895 229 88 0 0 chr1 40704683 40704717 -156490715 - URR1B DNA MER1_type 0 225 192 2 895 297 0 0 0 chr1 40706178 40706211 -156489221 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 895 1147 62 7 0 chr1 40706211 40706355 -156489077 - B1_Mm SINE Alu -2 145 1 2 895 674 244 39 130 chr1 40706391 40706598 -156488834 - B3 SINE B2 -28 188 1 2 895 393 261 26 18 chr1 40706805 40706918 -156488514 - PB1D10 SINE Alu 0 117 4 2 895 247 287 9 53 chr1 40706921 40707035 -156488397 + Tigger5 DNA MER2_type 29 137 -2269 2 895 456 240 171 28 chr1 40707142 40707318 -156488114 + Tigger5 DNA MER2_type 2206 2406 0 2 895 498 17 0 0 chr1 40707953 40708012 -156487420 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 895 853 311 58 46 chr1 40709086 40709500 -156485932 - MTD LTR MaLR 0 419 1 2 895 389 316 25 34 chr1 40711338 40711456 -156483976 - B1F1 SINE Alu 0 117 1 2 895 2438 154 39 29 chr1 40712377 40712791 -156482641 - MTC LTR MaLR -3 418 1 2 895 279 0 0 0 chr1 40712823 40712854 -156482578 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 895 448 269 0 18 chr1 40712854 40712973 -156482459 - B1F SINE Alu -8 141 1 2 895 21 0 0 0 chr1 40712979 40713000 -156482432 + AT_rich Low_complexity Low_complexity 1 21 0 3 895 222 150 0 0 chr1 40713325 40713365 -156482067 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 895 603 102 0 0 chr1 40713472 40713560 -156481872 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 3 895 227 317 12 24 chr1 40713567 40713651 -156481781 - B1F1 SINE Alu 0 149 67 3 895 21 82 0 0 chr1 40713651 40713700 -156481732 + AT_rich Low_complexity Low_complexity 1 49 0 3 895 890 242 17 35 chr1 40713709 40713940 -156481492 - B4A SINE B4 -61 231 5 3 895 317 117 0 16 chr1 40715390 40715451 -156479981 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 895 393 314 211 29 chr1 40715453 40715699 -156479733 - B4A SINE B4 0 292 2 3 895 250 253 60 0 chr1 40717093 40717176 -156478256 - MER53 DNA hAT -104 89 2 3 895 229 281 44 22 chr1 40717522 40717613 -156477819 + B4A SINE B4 1 93 -199 3 895 459 0 0 0 chr1 40717745 40717796 -156477636 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 895 201 175 0 0 chr1 40718636 40718676 -156476756 + CT-rich Low_complexity Low_complexity 1 40 0 3 895 300 311 95 70 chr1 40720999 40721160 -156474272 - L1MB1 LINE L1 -200 5968 5791 3 895 201 121 0 0 chr1 40721160 40721193 -156474239 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 895 300 311 95 70 chr1 40721193 40721235 -156474197 - L1MB1 LINE L1 -378 5790 5762 3 895 654 13 0 0 chr1 40721235 40721310 -156474122 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 895 300 311 95 70 chr1 40721310 40721389 -156474043 - L1MB1 LINE L1 -407 5761 5678 3 895 691 262 12 6 chr1 40721391 40721556 -156473876 + B3A SINE B2 2 167 -31 3 895 286 250 44 0 chr1 40721783 40721851 -156473581 - L1MB1 LINE L1 -778 5405 5335 3 895 209 77 51 0 chr1 40723649 40723688 -156471744 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 895 227 79 26 0 chr1 40723935 40723973 -156471459 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 895 1530 0 0 0 chr1 40724553 40724723 -156470709 + (TCTCCC)n Simple_repeat Simple_repeat 6 175 0 3 895 265 192 38 13 chr1 40724728 40724807 -156470625 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 3 895 668 104 32 0 chr1 40724809 40724934 -156470498 + (TC)n Simple_repeat Simple_repeat 2 130 0 3 895 252 0 0 0 chr1 40725123 40725151 -156470281 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 895 247 340 162 19 chr1 40725301 40725517 -156469915 - MER2 DNA MER2_type -98 247 1 3 895 201 175 0 0 chr1 40725911 40725951 -156469481 + CT-rich Low_complexity Low_complexity 2 41 0 3 895 833 145 106 24 chr1 40725955 40726125 -156469307 + MurERV4_19-int LTR ERVK 5597 5780 0 3 895 4061 123 130 6 chr1 40726125 40726779 -156468653 + RMER19A LTR ERVK 1 735 -2 3 895 406 169 29 29 chr1 40727341 40727555 -156467877 + (TG)n Simple_repeat Simple_repeat 1 214 0 3 895 260 312 50 21 chr1 40727590 40727731 -156467701 - B4A SINE B4 -10 282 138 3 895 437 213 31 39 chr1 40728376 40728503 -156466929 + ORR1C1 LTR MaLR 1 126 -248 3 895 1164 216 49 62 chr1 40728541 40728870 -156466562 + ORR1C2 LTR MaLR 41 383 -1 3 895 244 143 0 49 chr1 40728940 40729021 -156466411 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 895 569 186 274 6 chr1 40729024 40729192 -156466240 + ORR1C1 LTR MaLR 166 378 0 3 895 417 277 132 20 chr1 40729583 40729734 -156465698 + B3A SINE B2 1 168 -30 3 895 496 42 0 27 chr1 40730179 40730252 -156465180 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 895 476 162 6 35 chr1 40730563 40730736 -156464696 + (TTCA)n Simple_repeat Simple_repeat 1 168 0 3 895 521 223 3 0 chr1 40731707 40732003 -156463429 + (TG)n Simple_repeat Simple_repeat 1 297 0 3 895 276 297 0 0 chr1 40732014 40732078 -156463354 - ID4_ SINE ID -14 69 6 3 895 21 0 0 0 chr1 40732151 40732172 -156463260 + GC_rich Low_complexity Low_complexity 1 21 0 3 895 307 286 4 10 chr1 40733548 40733650 -156461782 + PB1D10 SINE Alu 10 110 -7 3 895 540 0 0 0 chr1 40733662 40733722 -156461710 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 895 387 0 0 0 chr1 40733722 40733764 -156461668 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 895 252 320 58 90 chr1 40735766 40736044 -156459388 - ORR1E LTR MaLR -8 351 83 3 895 411 73 0 0 chr1 40736166 40736221 -156459211 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 895 281 256 127 7 chr1 40736314 40736464 -156458968 - B4 SINE B4 -127 165 1 3 895 205 75 50 0 chr1 40738365 40738405 -156457027 + (CCCCCG)n Simple_repeat Simple_repeat 4 45 0 3 895 252 0 0 0 chr1 40740892 40740920 -156454512 + (T)n Simple_repeat Simple_repeat 1 28 0 3 895 317 24 0 23 chr1 40742970 40743013 -156452419 + (TTA)n Simple_repeat Simple_repeat 3 44 0 3 895 486 0 0 0 chr1 40743617 40743671 -156451761 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 895 845 225 50 5 chr1 40744763 40744964 -156450468 - B3 SINE B2 -6 210 1 3 895 1155 96 0 4 chr1 40745188 40745430 -156450002 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 895 524 251 0 6 chr1 40746517 40746689 -156448743 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 895 229 135 19 19 chr1 40746703 40746756 -156448676 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 895 26 0 0 0 chr1 40747200 40747226 -156448206 + AT_rich Low_complexity Low_complexity 1 26 0 3 895 24 0 0 0 chr1 40747477 40747501 -156447931 + AT_rich Low_complexity Low_complexity 1 24 0 3 895 473 32 0 16 chr1 40747845 40747909 -156447523 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 895 249 304 57 113 chr1 40747921 40748062 -156447370 - RSINE1 SINE B4 -25 140 8 3 895 234 0 0 0 chr1 40748886 40748912 -156446520 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 3 895 303 315 120 0 chr1 40749008 40749116 -156446316 - ID_B1 SINE B4 -18 206 86 3 895 213 288 35 49 chr1 40749418 40749592 -156445840 - MIRb SINE MIR -84 192 15 3 895 429 54 0 0 chr1 40749744 40749800 -156445632 + (TATAG)n Simple_repeat Simple_repeat 5 60 0 3 895 320 253 12 0 chr1 40749821 40749904 -156445528 + MER2B DNA MER2_type 187 270 -66 3 895 402 289 74 8 chr1 40752104 40752226 -156443206 - Lx8 LINE L1 -208 7265 7136 3 895 339 179 71 12 chr1 40752285 40752370 -156443062 - PB1D10 SINE Alu 0 117 28 3 895 870 174 99 5 chr1 40752821 40753012 -156442420 - URR1A DNA MER1_type 0 226 18 3 895 307 178 68 0 chr1 40753008 40753081 -156442351 - ORR1D1 LTR MaLR -295 79 2 3 895 340 305 30 52 chr1 40754677 40754812 -156440620 - MTEa LTR MaLR -37 342 211 3 895 2217 102 12 38 chr1 40754843 40755189 -156440243 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 895 22704 44 79 20 chr1 40755191 40758104 -156437328 + IAPEz-int LTR ERVK 3 3076 -3405 3 895 7049 42 3 16 chr1 40758090 40758951 -156436481 + IAPEz-int LTR ERVK 5630 6479 -2 3 895 2217 102 12 38 chr1 40758953 40759299 -156436133 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 895 827 226 6 0 chr1 40759320 40759488 -156435944 - MTEa LTR MaLR -202 177 9 3 895 594 268 27 49 chr1 40759498 40759722 -156435710 - MTEa-int LTR MaLR -2 1578 1360 3 895 959 233 89 46 chr1 40759741 40760043 -156435389 - MTEa LTR MaLR -62 317 3 3 895 286 284 46 0 chr1 40761803 40761912 -156433520 - Tigger5 DNA MER2_type 0 2406 2293 3 895 915 95 7 0 chr1 40761932 40762069 -156433363 - URR1B DNA MER1_type -2 223 86 3 895 370 252 157 18 chr1 40762114 40762280 -156433152 - Tigger5 DNA MER2_type -2182 224 36 3 895 188 56 83 0 chr1 40762873 40762909 -156432523 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 896 642 307 37 14 chr1 40763399 40763617 -156431815 - L1MDa LINE L1 -6221 412 190 3 896 232 213 33 0 chr1 40763630 40763691 -156431741 + B3 SINE B2 1 63 -153 3 896 34 55 0 0 chr1 40763975 40764030 -156431402 + AT_rich Low_complexity Low_complexity 1 55 0 3 896 389 302 119 13 chr1 40764158 40764207 -156431225 + RMER30 DNA MER1_type 35 83 -119 3 896 315 0 0 0 chr1 40764207 40764242 -156431190 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 896 389 302 119 13 chr1 40764242 40764343 -156431089 + RMER30 DNA MER1_type 84 200 -2 3 896 612 73 0 0 chr1 40764517 40764599 -156430833 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 3 896 1078 123 89 0 chr1 40764600 40764779 -156430653 - B2_Mm2 SINE B2 0 195 1 3 896 180 97 0 0 chr1 40764797 40764828 -156430604 + (A)n Simple_repeat Simple_repeat 1 31 0 3 896 270 293 0 0 chr1 40765024 40765106 -156430326 + L1MDa LINE L1 233 314 -6319 3 896 556 278 22 74 chr1 40765176 40765473 -156429959 - L1_Rod LINE L1 -643 5657 5341 3 896 504 341 11 34 chr1 40765669 40765936 -156429496 - L1_Mur2 LINE L1 -879 4998 4738 3 896 638 202 15 8 chr1 40766037 40766167 -156429265 - ID_B1 SINE B4 -8 216 86 3 896 255 372 39 14 chr1 40766776 40766983 -156428449 + L2 LINE L2 2784 2995 -424 3 896 3484 3 0 0 chr1 40767900 40768281 -156427151 - L1Md_A LINE L1 0 6582 6202 3 896 35 105 0 0 chr1 40768883 40769016 -156426416 + AT_rich Low_complexity Low_complexity 1 133 0 3 896 351 89 0 0 chr1 40769638 40769694 -156425738 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 896 21 36 0 0 chr1 40770065 40770093 -156425339 + AT_rich Low_complexity Low_complexity 1 28 0 3 896 459 292 115 31 chr1 40770210 40770493 -156424939 + MER58B DNA MER1_type 5 325 -16 3 896 259 219 256 0 chr1 40772357 40772439 -156422993 - MLT1B LTR MaLR -12 378 276 3 896 267 31 0 0 chr1 40772762 40772794 -156422638 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 896 593 132 90 30 chr1 40774159 40774292 -156421140 - B1_Mur4 SINE Alu 0 150 10 3 896 415 297 94 0 chr1 40774649 40774787 -156420645 + B4 SINE B4 1 151 -141 3 896 180 77 0 0 chr1 40774825 40774851 -156420581 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 3 896 225 0 0 0 chr1 40774852 40774877 -156420555 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 896 720 323 98 36 chr1 40776064 40776453 -156418979 - MER21B LTR ERV1 -448 415 3 3 896 522 0 0 0 chr1 40776954 40777012 -156418420 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 896 324 0 0 0 chr1 40777489 40777525 -156417907 + (T)n Simple_repeat Simple_repeat 1 36 0 3 896 286 174 292 35 chr1 40778624 40778737 -156416695 - Lx3B LINE L1 -55 6918 6777 3 896 290 213 0 0 chr1 40778732 40778807 -156416625 + Lx3C LINE L1 6898 6972 -4 3 896 219 185 0 18 chr1 40778809 40778864 -156416568 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 896 243 190 0 0 chr1 40780595 40780653 -156414779 + GA-rich Low_complexity Low_complexity 1 58 0 3 896 1368 45 0 5 chr1 40781545 40781973 -156413459 + (CA)n Simple_repeat Simple_repeat 1 425 0 3 896 482 108 12 0 chr1 40782688 40782771 -156412661 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 896 520 305 126 29 chr1 40782771 40783017 -156412415 - B4A SINE B4 -22 270 1 4 896 49 80 0 0 chr1 40783869 40783981 -156411451 + AT_rich Low_complexity Low_complexity 1 112 0 4 896 306 205 83 12 chr1 40784895 40784979 -156410453 - ORR1D2 LTR MaLR -280 90 1 4 896 207 114 0 0 chr1 40785838 40785873 -156409559 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 896 405 250 0 0 chr1 40786195 40786209 -156409223 + (TG)n Simple_repeat Simple_repeat 1 14 0 4 896 444 19 0 0 chr1 40786209 40786262 -156409170 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 896 405 250 0 0 chr1 40786262 40786427 -156409005 + (TG)n Simple_repeat Simple_repeat 2 166 0 4 896 360 282 68 21 chr1 40788209 40788401 -156407031 + MER33 DNA MER1_type 6 206 -118 4 896 955 241 8 37 chr1 40788435 40788676 -156406756 + MTD LTR MaLR 34 267 -152 4 896 286 175 0 17 chr1 40788900 40788958 -156406474 + PB1D7 SINE Alu 56 112 -8 4 896 366 297 45 0 chr1 40794115 40794226 -156401206 + MER2B DNA MER2_type 180 295 -41 4 896 765 284 105 58 chr1 40794395 40794806 -156400626 - Lx8 LINE L1 0 7473 7044 4 896 1171 35 14 0 chr1 40795123 40795267 -156400165 - B1_Mm SINE Alu 0 147 2 4 896 250 374 0 0 chr1 40795300 40795317 -156400115 - RSINE1 SINE B4 -65 100 2 4 896 575 98 0 0 chr1 40795317 40795399 -156400033 - B2_Mm2 SINE B2 -113 82 1 4 896 339 252 69 30 chr1 40796713 40796844 -156398588 + B1F SINE Alu 1 136 -13 4 896 325 272 19 0 chr1 40797003 40797106 -156398326 + MLT1D LTR MaLR 24 128 -377 4 896 1027 15 0 30 chr1 40797149 40797284 -156398148 + (GGGAGA)n Simple_repeat Simple_repeat 3 133 0 4 896 250 368 28 9 chr1 40797330 40797437 -156397995 + MLT1D LTR MaLR 277 385 -120 4 896 317 314 100 6 chr1 40797622 40797792 -156397640 + MIR SINE MIR 42 227 -35 4 896 1004 86 17 6 chr1 40799749 40799925 -156395507 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 896 647 202 11 17 chr1 40799929 40800110 -156395322 + CT-rich Low_complexity Low_complexity 1 180 0 4 896 422 231 20 13 chr1 40800128 40800277 -156395155 + CT-rich Low_complexity Low_complexity 3 152 0 4 896 396 0 0 0 chr1 40801908 40801952 -156393480 + (GGA)n Simple_repeat Simple_repeat 1 44 0 4 896 191 259 165 26 chr1 40802364 40802479 -156392953 - MIRc SINE MIR -46 222 92 4 896 558 240 0 8 chr1 40804064 40804194 -156391238 - B1_Mur1 SINE Alu 0 149 21 4 896 867 236 35 10 chr1 40805454 40805651 -156389781 - B3 SINE B2 -11 205 4 4 896 368 289 78 31 chr1 40806421 40806598 -156388834 - LTR40c LTR ERVL -74 391 191 4 896 620 67 0 22 chr1 40806931 40807022 -156388410 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 4 896 428 222 9 0 chr1 40807288 40807396 -156388036 + GA-rich Low_complexity Low_complexity 1 109 0 4 896 741 268 17 81 chr1 40807769 40808065 -156387367 - B4A SINE B4 -11 281 5 4 896 1174 68 0 0 chr1 40808232 40808379 -156387053 + B1_Mus1 SINE Alu 2 148 0 4 896 334 48 47 31 chr1 40808381 40808445 -156386987 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 4 896 266 0 29 0 chr1 40808478 40808512 -156386920 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 896 255 333 41 18 chr1 40809534 40809705 -156385727 - Helitron2Na_Mam RC Helitron? -27 297 123 4 896 39 22 0 0 chr1 40809849 40809895 -156385537 + AT_rich Low_complexity Low_complexity 1 46 0 4 896 214 81 0 88 chr1 40809900 40809968 -156385464 + (TTATA)n Simple_repeat Simple_repeat 4 65 0 4 896 48 18 0 0 chr1 40809968 40810023 -156385409 + AT_rich Low_complexity Low_complexity 1 55 0 4 896 3045 231 30 24 chr1 40810023 40810242 -156385190 - Lx5 LINE L1 -3 7047 6824 4 896 240 35 0 0 chr1 40810242 40810271 -156385161 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 896 3045 231 30 24 chr1 40810271 40810721 -156384711 - Lx5 LINE L1 -227 6823 6374 4 896 300 307 0 11 chr1 40810761 40810863 -156384569 + B1F SINE Alu 17 117 -32 4 896 424 258 0 0 chr1 40813337 40813434 -156381998 + B1F1 SINE Alu 1 97 -52 4 896 360 0 0 0 chr1 40813936 40813976 -156381456 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 896 274 71 17 51 chr1 40813986 40814045 -156381387 + (TTTTTG)n Simple_repeat Simple_repeat 3 59 0 4 896 991 128 0 32 chr1 40814046 40814200 -156381232 - B1_Mur4 SINE Alu 0 150 2 4 896 195 42 0 0 chr1 40814510 40814534 -156380898 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 896 218 81 27 0 chr1 40814838 40814875 -156380557 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 896 1108 253 117 11 chr1 40815484 40815843 -156379589 - MTD LTR MaLR -2 417 17 4 896 285 29 0 0 chr1 40815843 40815877 -156379555 + (CAG)n Simple_repeat Simple_repeat 2 35 0 4 896 1108 253 117 11 chr1 40815877 40815893 -156379539 - MTD LTR MaLR -403 16 2 4 896 237 83 0 0 chr1 40817058 40817094 -156378338 + (GGCTG)n Simple_repeat Simple_repeat 2 37 0 4 896 217 284 79 124 chr1 40817905 40818082 -156377350 - L2 LINE L2 -622 2797 2629 4 896 506 324 32 64 chr1 40818106 40818479 -156376953 - MLT1B LTR MaLR -2 388 28 4 896 213 200 50 42 chr1 40818998 40819118 -156376314 + (CATATA)n Simple_repeat Simple_repeat 3 123 0 4 896 210 113 67 53 chr1 40819136 40819286 -156376146 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 896 241 200 26 26 chr1 40819294 40819371 -156376061 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 4 896 270 0 0 0 chr1 40819379 40819409 -156376023 + (TAA)n Simple_repeat Simple_repeat 3 32 0 4 896 224 337 0 0 chr1 40819781 40819864 -156375568 - MER5B DNA MER1_type 0 178 96 4 896 336 268 26 59 chr1 40820774 40820935 -156374497 + B3A SINE B2 1 159 -57 4 896 1051 107 39 11 chr1 40820969 40821149 -156374283 + B2_Mm2 SINE B2 2 186 -9 4 896 231 191 0 0 chr1 40821325 40821367 -156374065 - MIR SINE MIR -105 157 116 4 896 300 283 72 15 chr1 40822700 40822813 -156372619 + B1F1 SINE Alu 3 117 0 4 896 297 247 59 40 chr1 40822851 40822868 -156372564 - B1F SINE Alu 0 149 48 4 896 372 241 0 48 chr1 40822868 40822951 -156372481 - ID_B1 SINE B4 -17 207 129 4 896 294 82 26 52 chr1 40823650 40823727 -156371705 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 4 896 397 251 188 28 chr1 40826345 40826521 -156368911 + MTD LTR MaLR 123 326 -93 4 896 430 233 10 10 chr1 40826530 40826634 -156368798 - MTD LTR MaLR -315 104 1 4 896 225 279 192 54 chr1 40827462 40827629 -156367803 + Tigger7 DNA MER2_type 231 420 -2071 4 896 22 0 0 0 chr1 40828088 40828110 -156367322 + AT_rich Low_complexity Low_complexity 1 22 0 4 896 335 288 80 56 chr1 40828212 40828374 -156367058 - Lx8 LINE L1 -159 7314 7149 4 896 266 235 29 14 chr1 40832012 40832081 -156363351 + ID_B1 SINE B4 129 198 -26 4 896 29 28 0 0 chr1 40832813 40832849 -156362583 + AT_rich Low_complexity Low_complexity 1 36 0 4 896 3306 28 15 5 chr1 40833250 40833641 -156361791 + MTA_Mm LTR MaLR 1 395 -1 4 896 561 280 53 19 chr1 40834543 40834876 -156360556 + L1M3 LINE L1 4917 5257 -886 4 896 307 295 113 16 chr1 40834899 40835023 -156360409 + Lx8 LINE L1 7144 7279 -194 4 896 180 0 0 0 chr1 40835044 40835064 -156360368 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 896 265 256 185 17 chr1 40835335 40835537 -156359895 + L1M3 LINE L1 5216 5451 -732 4 896 3216 148 169 26 chr1 40835644 40836403 -156359029 + RLTR25B LTR ERVK 15 1038 -65 4 896 202 29 0 54 chr1 40836403 40836440 -156358992 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 896 576 165 7 119 chr1 40836440 40836505 -156358927 + RLTR25B LTR ERVK 1039 1103 0 4 896 2943 250 87 141 chr1 40836642 40836964 -156358468 + RMER1A Other Other 15 515 -551 4 896 1688 155 14 111 chr1 40836964 40837326 -156358106 + ORR1A4 LTR MaLR 1 327 -2 4 896 3102 204 102 50 chr1 40837326 40838170 -156357262 + RMER1B Other Other 199 1063 -3 4 896 717 110 22 46 chr1 40839054 40839377 -156356055 + CT-rich Low_complexity Low_complexity 1 315 0 4 896 203 0 0 36 chr1 40839433 40839461 -156355971 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 896 255 79 0 0 chr1 40839758 40839796 -156355636 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 896 189 121 0 0 chr1 40841995 40842028 -156353404 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 4 896 558 210 23 39 chr1 40842029 40842158 -156353274 - B3A SINE B2 -67 131 5 4 896 455 209 9 0 chr1 40843646 40843756 -156351676 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 896 241 269 183 0 chr1 40844849 40844942 -156350490 - PB1D10 SINE Alu -7 110 1 4 896 423 0 0 0 chr1 40848846 40848893 -156346539 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 896 296 322 83 51 chr1 40848900 40849116 -156346316 + ERVL-E-int LTR ERVL 1503 1725 -3942 4 896 510 31 0 0 chr1 40849764 40849828 -156345604 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 896 344 284 25 0 chr1 40850119 40850200 -156345232 + ERVL-E-int LTR ERVL 1871 1953 -3714 4 896 312 204 125 0 chr1 40850296 40850384 -156345048 - MTD LTR MaLR 0 419 321 4 896 1172 75 69 6 chr1 40850380 40850553 -156344879 + MTB LTR MaLR 217 400 0 4 896 550 242 189 67 chr1 40850800 40851070 -156344362 + MTD LTR MaLR 18 320 -99 4 896 834 86 0 0 chr1 40851070 40851187 -156344245 - MT2B LTR ERVL 0 601 485 4 896 549 135 0 0 chr1 40851297 40851386 -156344046 + (GAA)n Simple_repeat Simple_repeat 3 91 0 4 896 1368 67 0 0 chr1 40851388 40851568 -156343864 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 896 243 0 0 0 chr1 40851568 40851594 -156343838 + (CAG)n Simple_repeat Simple_repeat 2 28 0 4 896 2404 102 163 16 chr1 40851800 40852229 -156343203 - MT2B LTR ERVL -103 498 7 4 896 330 200 0 0 chr1 40852231 40852291 -156343141 + MTD LTR MaLR 319 378 -41 4 896 708 278 75 4 chr1 40852734 40852987 -156342445 + B4 SINE B4 2 272 -20 4 896 224 100 0 24 chr1 40853012 40853053 -156342379 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 896 254 250 31 60 chr1 40853866 40853950 -156341482 + B4A SINE B4 81 158 -66 4 896 315 281 0 0 chr1 40854134 40854216 -156341216 + ID_B1 SINE B4 143 224 0 4 896 232 205 85 49 chr1 40854537 40854619 -156340813 + LTR40c LTR ERVL 329 413 -52 4 896 267 273 119 20 chr1 40854653 40854754 -156340678 - PB1D7 SINE Alu -7 113 3 4 896 25 31 0 0 chr1 40854835 40854867 -156340565 + AT_rich Low_complexity Low_complexity 1 32 0 5 896 654 270 67 42 chr1 40854923 40855116 -156340316 - B3A SINE B2 0 198 1 5 896 742 295 42 40 chr1 40855212 40855590 -156339842 + L1ME1 LINE L1 5538 5916 -263 5 896 3538 93 130 0 chr1 40855630 40856146 -156339286 - MT2B2 LTR ERVL 0 584 2 5 896 262 191 163 33 chr1 40856262 40856354 -156339078 + L1MCa LINE L1 93 196 -5849 5 896 1692 233 98 43 chr1 40856413 40856686 -156338746 + Lx9 LINE L1 6883 7159 -485 5 896 2493 172 2 42 chr1 40856686 40857164 -156338268 + RMER6B LTR ERVK 1 459 -2 5 896 1692 233 98 43 chr1 40857164 40857419 -156338013 + Lx9 LINE L1 7160 7440 -204 5 896 519 45 0 0 chr1 40857421 40857487 -156337945 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 896 206 128 0 25 chr1 40857575 40857615 -156337817 + GA-rich Low_complexity Low_complexity 2 40 0 5 896 415 222 53 11 chr1 40857653 40857761 -156337671 + L1MCa LINE L1 587 681 -6070 5 896 448 162 87 48 chr1 40857769 40857873 -156337559 + B3A SINE B2 3 110 -88 5 896 1137 109 0 4 chr1 40858279 40858741 -156336691 + (CCA)n Simple_repeat Simple_repeat 1 460 0 5 896 626 349 43 14 chr1 40858815 40859097 -156336335 - Lx8 LINE L1 -705 6768 6479 5 896 26 0 0 0 chr1 40860373 40860399 -156335033 + AT_rich Low_complexity Low_complexity 1 26 0 5 896 225 295 0 0 chr1 40860690 40860751 -156334681 - Lx9 LINE L1 -887 6757 6697 5 896 1315 276 38 20 chr1 40860751 40861199 -156334233 + Lx8 LINE L1 6678 7133 -340 5 896 186 43 0 0 chr1 40865192 40865215 -156330217 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 896 204 97 0 0 chr1 40865363 40865394 -156330038 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 896 779 246 118 11 chr1 40865394 40865705 -156329727 - MLT2C2 LTR ERVL -56 341 1 5 896 246 208 41 0 chr1 40867690 40867750 -156327682 + ID4 SINE ID 5 66 -17 5 896 487 179 27 35 chr1 40867883 40868149 -156327283 + CT-rich Low_complexity Low_complexity 1 263 0 5 896 224 167 0 45 chr1 40868149 40868193 -156327239 + C-rich Low_complexity Low_complexity 4 45 0 5 896 471 205 6 45 chr1 40868202 40868381 -156327051 + CT-rich Low_complexity Low_complexity 4 175 0 5 896 195 125 70 18 chr1 40869926 40869983 -156325449 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 5 896 35 24 0 0 chr1 40870045 40870087 -156325345 + AT_rich Low_complexity Low_complexity 1 42 0 5 896 8093 50 10 6 chr1 40870087 40871243 -156324189 - L1_Mus1 LINE L1 -2 6565 5406 5 896 298 77 0 0 chr1 40871232 40871271 -156324161 + L1_Mus1 LINE L1 5377 5415 -468 5 896 374 154 63 29 chr1 40871273 40871447 -156323985 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 896 27 73 0 0 chr1 40871467 40871522 -156323910 + AT_rich Low_complexity Low_complexity 1 55 0 5 896 21 0 0 0 chr1 40872860 40872881 -156322551 + AT_rich Low_complexity Low_complexity 1 21 0 5 896 366 330 68 6 chr1 40873503 40873680 -156321752 - MER20 DNA MER1_type 0 219 32 5 896 331 266 26 103 chr1 40873797 40873952 -156321480 - MER2 DNA MER2_type -3 342 200 5 896 1169 94 50 0 chr1 40873962 40874142 -156321290 - B2_Mm2 SINE B2 -5 190 2 5 896 1124 101 6 0 chr1 40874471 40874649 -156320783 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 896 203 256 0 0 chr1 40875155 40875198 -156320234 + (CATG)n Simple_repeat Simple_repeat 4 46 0 5 896 358 342 61 32 chr1 40876111 40876389 -156319043 - L1MDa LINE L1 -5384 1249 964 5 896 4508 135 40 3 chr1 40876499 40877206 -156318226 - RMER19A LTR ERVK -2 735 3 5 896 244 362 12 36 chr1 40877328 40877494 -156317938 - L1MDa LINE L1 -5696 937 776 5 896 662 302 22 9 chr1 40877688 40877915 -156317517 - L1MDa LINE L1 -6389 244 15 5 896 292 328 60 15 chr1 40877931 40878064 -156317368 - L2 LINE L2 -784 2635 2497 5 896 324 48 0 0 chr1 40878383 40878425 -156317007 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 896 3262 60 57 0 chr1 40878425 40878845 -156316587 - L1_Mus3 LINE L1 -16 6622 6179 5 896 1059 138 103 94 chr1 40879537 40879761 -156315671 - URR1A DNA MER1_type 0 226 1 5 896 24 0 0 0 chr1 40880002 40880026 -156315406 + AT_rich Low_complexity Low_complexity 1 24 0 5 896 423 307 163 37 chr1 40880291 40880697 -156314735 - RMER5 LTR ERV1 -18 516 60 5 896 2271 117 0 58 chr1 40880772 40881118 -156314314 + ORR1A3 LTR MaLR 1 326 0 5 896 256 314 88 82 chr1 40882067 40882369 -156313063 - LTR48B LTR ERV1 0 787 399 5 896 193 330 77 0 chr1 40884901 40884992 -156310440 - MIR SINE MIR -98 164 67 5 896 291 161 0 0 chr1 40886735 40886791 -156308641 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 896 684 183 0 62 chr1 40886811 40887069 -156308363 + (CA)n Simple_repeat Simple_repeat 1 242 0 5 896 3623 137 130 3 chr1 40888114 40888716 -156306716 + RLTR33 LTR ERVK 1 678 0 5 896 3332 98 6 27 chr1 40888794 40889275 -156306157 - MT2C_Mm LTR ERVL 0 475 5 5 896 1769 254 116 71 chr1 40889692 40890113 -156305319 + RCHARR1 DNA MER1_type 90 554 -420 5 896 1454 202 145 101 chr1 40890113 40890670 -156304762 + RLTR31A_Mm LTR ERVK 1 582 -2 5 896 1769 254 116 71 chr1 40890670 40890953 -156304479 + RCHARR1 DNA MER1_type 555 826 -148 5 896 694 294 24 10 chr1 40890978 40891184 -156304248 - ID_B1 SINE B4 -6 218 10 5 896 417 266 86 0 chr1 40891184 40891323 -156304109 + RCHARR1 DNA MER1_type 821 971 -3 5 896 3088 147 19 4 chr1 40891325 40891844 -156303588 + Lx4A LINE L1 6521 7047 -11 5 896 207 0 0 0 chr1 40891844 40891867 -156303565 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 5 896 441 0 0 0 chr1 40892044 40892093 -156303339 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 896 388 230 74 11 chr1 40892122 40892274 -156303158 - B3 SINE B2 -21 177 11 5 896 369 0 0 0 chr1 40892608 40892649 -156302783 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 897 1566 236 83 18 chr1 40895652 40896037 -156299395 - MTC LTR MaLR 0 421 12 5 897 180 125 0 0 chr1 40896043 40896075 -156299357 + (CAA)n Simple_repeat Simple_repeat 3 34 0 5 897 592 243 27 13 chr1 40896499 40896649 -156298783 - L1MB7 LINE L1 -12 6172 6021 5 897 216 0 0 0 chr1 40897808 40897832 -156297600 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 897 3055 206 23 9 chr1 40898852 40899415 -156296017 - Lx5 LINE L1 -10 7040 6470 5 897 4345 160 43 7 chr1 40899415 40900581 -156294851 - Lx5 LINE L1 -699 6351 5138 5 897 26 0 0 0 chr1 40900585 40900611 -156294821 + AT_rich Low_complexity Low_complexity 1 26 0 5 897 549 0 0 0 chr1 40900634 40900695 -156294737 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 897 1123 135 50 5 chr1 40901733 40901934 -156293498 + URR1B DNA MER1_type 16 225 0 5 897 448 281 102 51 chr1 40901934 40901983 -156293449 - CYRA11_Mm Unknown Y-chromosome -227 385 123 5 897 408 155 0 0 chr1 40902079 40902150 -156293282 + (ATG)n Simple_repeat Simple_repeat 1 71 0 5 897 357 82 0 0 chr1 40904411 40904460 -156290972 + (A)n Simple_repeat Simple_repeat 1 49 0 5 897 272 221 13 0 chr1 40904844 40904921 -156290511 + CT-rich Low_complexity Low_complexity 1 78 0 5 897 253 317 97 19 chr1 40904960 40905063 -156290369 - B1F1 SINE Alu -19 130 20 5 897 301 321 50 65 chr1 40905532 40905732 -156289700 - ORR1D2 LTR MaLR 0 359 163 5 897 672 223 14 0 chr1 40905732 40905952 -156289480 + GA-rich Low_complexity Low_complexity 1 222 0 5 897 613 275 28 11 chr1 40905952 40906132 -156289300 - ORR1D2 LTR MaLR -187 183 1 5 897 381 93 0 0 chr1 40906885 40906939 -156288493 + (CAT)n Simple_repeat Simple_repeat 1 54 0 5 897 392 282 164 30 chr1 40907018 40907383 -156288049 - L1MC4 LINE L1 -320 7722 7309 5 897 1972 132 24 0 chr1 40908405 40908700 -156286732 - Lx4A LINE L1 -283 6775 6474 5 897 1304 185 85 23 chr1 40908696 40908956 -156286476 + Lx4A LINE L1 6781 7056 -2 5 897 295 346 61 43 chr1 40909391 40909554 -156285878 + ORR1E LTR MaLR 1 166 -193 5 897 256 184 51 14 chr1 40909968 40910106 -156285326 + CT-rich Low_complexity Low_complexity 3 145 0 5 897 401 274 23 35 chr1 40910123 40910297 -156285135 + CT-rich Low_complexity Low_complexity 4 175 0 5 897 184 209 11 44 chr1 40910327 40910417 -156285015 + CT-rich Low_complexity Low_complexity 4 90 0 5 897 706 201 170 16 chr1 40910628 40910810 -156284622 + B3 SINE B2 4 213 -3 5 897 193 225 0 0 chr1 40911134 40911174 -156284258 + MIRb SINE MIR 214 253 -15 5 897 1257 149 17 52 chr1 40911265 40911498 -156283934 - URR1B DNA MER1_type 0 225 1 5 897 318 50 0 0 chr1 40914505 40914545 -156280887 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 897 564 132 0 0 chr1 40914545 40914651 -156280781 + (GA)n Simple_repeat Simple_repeat 2 107 0 5 897 3694 118 4 4 chr1 40915237 40915783 -156279649 - Lx3A LINE L1 -13 6968 6423 5 897 227 333 35 9 chr1 40915915 40916030 -156279402 + B1_Mur1 SINE Alu 31 148 -1 5 897 3415 33 0 8 chr1 40916040 40916439 -156278993 + MTA_Mm LTR MaLR 1 396 0 5 897 215 209 43 43 chr1 40916442 40916512 -156278920 + ID4_ SINE ID 1 70 -13 5 897 2445 89 0 6 chr1 40916615 40916943 -156278489 + ORR1A3 LTR MaLR 1 326 0 5 897 1120 187 14 0 chr1 40917201 40917410 -156278022 + ORR1B1 LTR MaLR 175 386 -8 5 897 2910 216 61 52 chr1 40917714 40918388 -156277044 - RMER1C Other Other -13 1329 650 5 897 198 250 0 0 chr1 40918749 40918805 -156276627 + CT-rich Low_complexity Low_complexity 2 57 0 5 897 305 172 16 0 chr1 40919137 40919201 -156276231 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 897 1774 202 41 6 chr1 40919226 40919570 -156275862 - MTC LTR MaLR -65 356 1 5 897 475 287 6 17 chr1 40919678 40919859 -156275573 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 897 222 205 228 13 chr1 40921631 40921710 -156273722 + PB1D10 SINE Alu 17 112 -5 5 897 293 196 53 0 chr1 40922546 40922741 -156272691 + (TG)n Simple_repeat Simple_repeat 1 205 0 5 897 466 250 40 23 chr1 40922780 40922956 -156272476 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 897 407 288 78 14 chr1 40922981 40923122 -156272310 - B3 SINE B2 -1 215 66 5 897 186 174 43 0 chr1 40923144 40923190 -156272242 - MIR SINE MIR -132 130 83 5 897 1040 50 0 7 chr1 40923542 40923683 -156271749 - B1_Mus1 SINE Alu -1 147 8 5 897 320 237 154 26 chr1 40925328 40925347 -156270085 + B1F SINE Alu 18 144 0 5 897 406 202 0 43 chr1 40925347 40925440 -156269992 + ID_B1 SINE B4 132 220 -4 5 897 292 159 0 0 chr1 40926575 40926644 -156268788 - MT2A LTR ERVL 0 533 465 5 897 525 235 0 0 chr1 40926672 40926851 -156268581 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 897 469 215 71 9 chr1 40926863 40927052 -156268380 - MT2A LTR ERVL -48 553 228 5 897 724 183 7 14 chr1 40927079 40927223 -156268209 - MT2A LTR ERVL -390 143 1 5 897 728 274 102 55 chr1 40927453 40927797 -156267635 - Lx8 LINE L1 0 7473 7114 6 897 471 318 41 15 chr1 40927983 40928178 -156267254 + Lx8 LINE L1 6132 6331 -1142 6 897 321 26 0 0 chr1 40928704 40928742 -156266690 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 897 288 0 0 0 chr1 40928742 40928773 -156266659 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 897 237 234 0 0 chr1 40930209 40930273 -156265159 + GA-rich Low_complexity Low_complexity 3 66 0 6 897 200 333 0 0 chr1 40930274 40930325 -156265107 + polypurine Low_complexity Low_complexity 5 55 0 6 897 774 191 8 20 chr1 40930327 40930686 -156264746 + GA-rich Low_complexity Low_complexity 1 354 0 6 897 203 240 0 13 chr1 40932702 40932767 -156262665 + GA-rich Low_complexity Low_complexity 1 64 0 6 897 390 42 0 0 chr1 40932767 40932815 -156262617 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 6 897 1847 179 59 28 chr1 40932973 40933433 -156261999 + RLTR28 LTR ERVL 37 510 -14 6 897 605 275 96 0 chr1 40933452 40933630 -156261802 + B3 SINE B2 3 197 -19 6 897 26 0 0 0 chr1 40933695 40933721 -156261711 + AT_rich Low_complexity Low_complexity 1 26 0 6 897 393 176 0 0 chr1 40934264 40934338 -156261094 + (CACCAT)n Simple_repeat Simple_repeat 6 79 0 6 897 315 266 16 24 chr1 40934487 40934614 -156260818 - L1MC1 LINE L1 -470 5863 5738 6 897 306 50 0 0 chr1 40934885 40934925 -156260507 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 897 260 299 85 75 chr1 40935374 40935573 -156259859 - RMER2 LTR ERV1 0 567 367 6 897 362 114 0 14 chr1 40936719 40936790 -156258642 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 897 717 175 0 0 chr1 40936856 40936993 -156258439 + (TG)n Simple_repeat Simple_repeat 1 137 0 6 897 360 252 226 0 chr1 40937729 40937844 -156257588 + B1F1 SINE Alu 2 142 -7 6 897 513 0 0 0 chr1 40938950 40939007 -156256425 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 6 897 887 138 6 22 chr1 40939007 40939052 -156256380 + polypyrimidine Low_complexity Low_complexity 133 177 0 6 897 1487 17 0 16 chr1 40939052 40939235 -156256197 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 897 887 138 6 22 chr1 40939235 40939367 -156256065 + polypyrimidine Low_complexity Low_complexity 3 132 0 6 897 423 88 15 0 chr1 40939379 40939447 -156255985 - B2_Mm1t SINE B2 -112 81 13 6 897 405 0 0 0 chr1 40940496 40940541 -156254891 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 897 1288 208 93 33 chr1 40941366 40941699 -156253733 + MTB LTR MaLR 1 353 -47 6 897 1347 7 0 0 chr1 40942182 40942334 -156253098 + (TCTCCC)n Simple_repeat Simple_repeat 4 155 0 6 897 468 0 0 0 chr1 40942342 40942394 -156253038 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 897 2537 166 80 93 chr1 40942467 40943092 -156252340 - RMER19B LTR ERVK -283 619 3 6 897 414 267 96 14 chr1 40943445 40943618 -156251814 + B3A SINE B2 16 204 -12 6 897 324 0 0 0 chr1 40943622 40943658 -156251774 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 897 409 190 10 10 chr1 40944090 40944191 -156251241 + (CATA)n Simple_repeat Simple_repeat 2 102 0 6 897 247 25 24 24 chr1 40945960 40946001 -156249431 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 897 225 338 40 60 chr1 40947737 40947888 -156247544 - MER5B DNA MER1_type -13 165 18 6 897 437 205 42 25 chr1 40948203 40948323 -156247109 + Lx7 LINE L1 7575 7696 0 6 897 298 298 29 9 chr1 40948344 40948449 -156246983 + ID_B1 SINE B4 84 190 -34 6 897 267 312 49 7 chr1 40948449 40948485 -156246947 + B1F SINE Alu 3 149 0 6 897 351 0 0 0 chr1 40948486 40948525 -156246907 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 897 228 270 80 13 chr1 40948632 40948707 -156246725 - MER5A DNA MER1_type -1 188 109 6 897 185 0 40 0 chr1 40949437 40949462 -156245970 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 897 611 312 73 21 chr1 40950126 40950453 -156244979 + ORR1D2 LTR MaLR 5 348 -22 6 897 771 212 14 68 chr1 40951110 40951317 -156244115 + B3A SINE B2 3 198 0 6 897 251 314 0 64 chr1 40951509 40951618 -156243814 - Tigger7 DNA MER2_type -15 2476 2375 6 897 541 215 57 57 chr1 40951649 40951861 -156243571 - Tigger7 DNA MER2_type -79 2412 2201 6 897 354 375 109 36 chr1 40951920 40952194 -156243238 - Tigger7 DNA MER2_type -2169 322 29 6 897 270 265 29 0 chr1 40952308 40952376 -156243056 - MLT1F2 LTR MaLR -116 444 375 6 897 230 312 116 8 chr1 40952535 40952664 -156242768 - MLT1F2-int LTR MaLR 0 1489 1347 6 897 235 49 49 0 chr1 40953894 40953935 -156241497 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 897 22 0 0 0 chr1 40953946 40953968 -156241464 + AT_rich Low_complexity Low_complexity 1 22 0 6 897 368 229 176 24 chr1 40953968 40954178 -156241254 + L1M5 LINE L1 2775 3016 -3130 6 897 22 0 0 0 chr1 40954301 40954323 -156241109 + AT_rich Low_complexity Low_complexity 1 22 0 6 897 298 267 147 0 chr1 40954324 40954440 -156240992 + B1_Mus1 SINE Alu 2 134 -14 6 897 362 252 19 0 chr1 40954731 40954838 -156240594 + L1M5 LINE L1 3427 3535 -2611 6 897 183 80 0 0 chr1 40954933 40954958 -156240474 + (CAT)n Simple_repeat Simple_repeat 2 26 0 6 897 632 305 48 62 chr1 40955093 40955527 -156239905 + L1M5 LINE L1 3699 4126 -2020 6 897 450 317 139 21 chr1 40955677 40955964 -156239468 - MLT1A LTR MaLR -17 357 37 6 897 3731 155 83 62 chr1 40956227 40956492 -156238940 + RMER19B LTR ERVK 1 237 -665 6 897 396 0 0 0 chr1 40956492 40956536 -156238896 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 897 222 37 0 0 chr1 40956546 40956573 -156238859 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 897 3731 155 83 62 chr1 40956573 40957168 -156238264 + RMER19B LTR ERVK 244 890 -12 6 897 22 0 0 0 chr1 40958607 40958629 -156236803 + GC_rich Low_complexity Low_complexity 1 22 0 6 897 463 242 123 8 chr1 40959388 40959557 -156235875 - B3A SINE B2 -30 186 1 6 897 269 275 57 16 chr1 40959631 40959753 -156235679 - MLT1A1 LTR MaLR -263 145 19 6 897 532 319 118 34 chr1 40960093 40960166 -156235266 - B4A SINE B4 0 292 225 6 897 387 0 0 0 chr1 40960166 40960209 -156235223 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 897 532 319 118 34 chr1 40960209 40960398 -156235034 - B4A SINE B4 -68 224 8 6 897 644 117 27 0 chr1 40960398 40960509 -156234923 + (TTCTCC)n Simple_repeat Simple_repeat 4 117 0 6 897 308 178 14 0 chr1 40960572 40960645 -156234787 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 897 239 337 30 0 chr1 40960830 40960931 -156234501 + MLT1F2 LTR MaLR 457 560 0 6 897 230 271 42 14 chr1 40960995 40961066 -156234366 + ID4_ SINE ID 1 73 -10 6 897 668 257 22 6 chr1 40961240 40961420 -156234012 + B3A SINE B2 1 183 -15 6 897 725 61 10 0 chr1 40962204 40962303 -156233129 + (TA)n Simple_repeat Simple_repeat 2 101 0 6 897 722 30 75 0 chr1 40963129 40963263 -156232169 + (TC)n Simple_repeat Simple_repeat 2 145 0 6 897 3174 12 0 0 chr1 40963943 40964289 -156231143 + ORR1A0 LTR MaLR 1 346 0 6 897 198 0 0 0 chr1 40964820 40964842 -156230590 + (A)n Simple_repeat Simple_repeat 1 22 0 6 897 225 0 0 0 chr1 40966233 40966258 -156229174 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 897 279 79 0 0 chr1 40966372 40966410 -156229022 + (A)n Simple_repeat Simple_repeat 1 38 0 6 897 543 107 0 0 chr1 40966717 40966801 -156228631 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 897 628 259 33 24 chr1 40968141 40968351 -156227081 + B3 SINE B2 1 212 -4 6 897 1795 157 25 55 chr1 40969084 40969449 -156225983 - ORR1B1 LTR MaLR 0 394 41 6 897 673 298 5 0 chr1 40971184 40971372 -156224060 + B3 SINE B2 1 189 -27 6 897 276 30 0 0 chr1 40971373 40971406 -156224026 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 897 3456 28 2 0 chr1 40972044 40972439 -156222993 - MTA_Mm LTR MaLR 0 396 1 6 897 9732 18 2 0 chr1 40972439 40973535 -156221897 - MTA_Mm-int LTR MaLR 0 1098 1 6 897 3494 25 2 0 chr1 40973535 40973930 -156221502 - MTA_Mm LTR MaLR 0 396 1 6 897 231 190 0 0 chr1 40974027 40974085 -156221347 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 897 480 296 0 53 chr1 40975222 40975393 -156220039 - Lx6 LINE L1 -40 7420 7259 6 897 357 24 0 0 chr1 40976589 40976631 -156218801 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 897 297 0 0 0 chr1 40976631 40976663 -156218769 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 897 399 21 0 0 chr1 40976950 40976998 -156218434 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 897 3264 245 29 16 chr1 40977002 40977917 -156217515 - Lx2B LINE L1 -11 6965 6030 6 897 7543 106 32 37 chr1 40977922 40979147 -156216285 + L1_Mur2 LINE L1 3934 5152 -725 6 897 391 259 36 27 chr1 40979414 40979525 -156215907 - PB1D10 SINE Alu 0 117 6 6 897 240 259 93 12 chr1 40979449 40979535 -156215897 - B4A SINE B4 -119 173 81 6 897 666 185 212 6 chr1 40982264 40982443 -156212989 - B3 SINE B2 0 216 1 6 897 571 268 36 24 chr1 40982598 40982766 -156212666 - MTD LTR MaLR -249 170 1 6 897 1731 182 209 30 chr1 40982812 40983305 -156212127 - Lx9 LINE L1 -944 6700 6120 6 897 2259 201 40 11 chr1 40983315 40983787 -156211645 + Lx9 LINE L1 6706 7191 -453 6 897 279 339 63 17 chr1 40983835 40984009 -156211423 - MLT1B LTR MaLR -15 375 194 6 897 783 0 0 0 chr1 40984850 40984937 -156210495 + (CAG)n Simple_repeat Simple_repeat 1 87 0 6 897 1742 168 37 84 chr1 40986048 40986451 -156208981 - ORR1C2 LTR MaLR 0 384 1 6 897 270 314 107 0 chr1 40986478 40986599 -156208833 + MTE2a LTR MaLR 7 140 -239 6 897 515 195 26 26 chr1 40986964 40987080 -156208352 - B3 SINE B2 -99 117 2 6 897 3679 130 194 8 chr1 40987265 40987885 -156207547 + RMER19A LTR ERVK 1 735 -2 6 897 1949 183 16 21 chr1 40988691 40989071 -156206361 - ORR1C1 LTR MaLR 0 378 1 6 897 390 245 9 28 chr1 40989079 40989188 -156206244 - Lx7 LINE L1 -7 7689 7583 6 897 1455 238 22 110 chr1 40989197 40989426 -156206006 + Lx7 LINE L1 7036 7246 -450 6 897 234 0 0 0 chr1 40989435 40989461 -156205971 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 897 951 123 0 7 chr1 40989461 40989598 -156205834 - B1_Mus1 SINE Alu -11 137 1 6 897 1455 238 22 110 chr1 40989598 40989614 -156205818 + Lx7 LINE L1 7247 7249 -447 6 897 2485 48 13 6 chr1 40989614 40989931 -156205501 - L1_Mus2 LINE L1 0 6566 6248 6 897 1455 238 22 110 chr1 40989931 40990147 -156205285 + Lx7 LINE L1 7250 7457 -239 6 897 21 0 0 0 chr1 40990840 40990861 -156204571 + AT_rich Low_complexity Low_complexity 1 21 0 7 897 5430 56 0 3 chr1 40991263 40991931 -156203501 + L1_Mus1 LINE L1 5899 6564 -3 7 897 3737 48 0 14 chr1 40992672 40993175 -156202257 + LTRIS2 LTR ERV1 69 564 0 7 897 2370 105 6 0 chr1 40994654 40994979 -156200453 - ORR1A2 LTR MaLR 0 327 1 7 897 1285 256 58 0 chr1 40995587 40995900 -156199532 + Lx9 LINE L1 6668 6998 -646 7 897 334 155 127 0 chr1 40995904 40995975 -156199457 + PB1D9 SINE Alu 2 81 -39 7 897 213 39 0 0 chr1 40996618 40996644 -156198788 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 897 620 278 67 30 chr1 40996880 40996929 -156198503 - Tigger7 DNA MER2_type -1982 509 461 7 897 2107 140 9 6 chr1 40996929 40997253 -156198179 - ORR1A3 LTR MaLR 0 326 2 7 897 620 278 67 30 chr1 40997253 40997470 -156197962 - Tigger7 DNA MER2_type -2031 460 234 7 897 468 322 0 0 chr1 40997500 40997646 -156197786 - Tigger7 DNA MER2_type -2336 155 10 7 897 257 298 26 17 chr1 40999003 40999119 -156196313 - L2a LINE L2 -14 3412 3296 7 897 315 0 0 0 chr1 41001278 41001313 -156194119 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 897 480 35 0 0 chr1 41001313 41001370 -156194062 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 897 346 213 41 8 chr1 41002968 41003091 -156192341 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 897 367 271 55 27 chr1 41003110 41003220 -156192212 - PB1D9 SINE Alu -1 119 7 4 897 264 59 0 0 chr1 41003552 41003586 -156191846 + (A)n Simple_repeat Simple_repeat 1 34 0 5 897 811 267 53 39 chr1 41003757 41004038 -156191394 - Lx7 LINE L1 0 7696 7412 6 897 402 173 0 0 chr1 41004105 41004186 -156191246 + ORR1A1 LTR MaLR 28 108 -238 7 897 2008 130 16 9 chr1 41004175 41004536 -156190896 + ORR1A2 LTR MaLR 8 386 -8 8 897 27 0 0 0 chr1 41004597 41004624 -156190808 + AT_rich Low_complexity Low_complexity 1 27 0 9 897 5700 232 38 30 chr1 41004666 41005092 -156190340 - Lx7 LINE L1 -354 7342 6919 6 897 967 148 208 0 chr1 41005092 41005275 -156190157 + URR1B DNA MER1_type 1 221 -4 1 897 5700 232 38 30 chr1 41005275 41005620 -156189812 - Lx7 LINE L1 -778 6918 6570 6 897 2199 123 71 68 chr1 41005620 41006029 -156189403 + RMER17C LTR ERVK 1 410 0 1 897 5700 232 38 30 chr1 41006029 41006573 -156188859 - Lx7 LINE L1 -1127 6569 6015 6 897 236 328 90 38 chr1 41006574 41006707 -156188725 - MLT1F2 LTR MaLR -66 503 364 1 897 253 350 73 24 chr1 41006767 41006931 -156188501 - MLT1F2 LTR MaLR -315 245 74 1 897 228 86 0 0 chr1 41007029 41007064 -156188368 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 897 216 158 0 0 chr1 41007089 41007127 -156188305 + G-rich Low_complexity Low_complexity 3 40 0 1 897 1239 45 0 0 chr1 41009763 41009917 -156185515 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1 897 243 88 0 0 chr1 41010266 41010300 -156185132 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 897 302 254 0 0 chr1 41010330 41010393 -156185039 - MER46C DNA MER2_type -12 326 264 1 897 220 216 0 0 chr1 41010937 41010988 -156184444 + A-rich Low_complexity Low_complexity 1 51 0 1 897 276 306 0 0 chr1 41012466 41012539 -156182893 + ID4_ SINE ID 8 80 -72 1 897 270 0 0 0 chr1 41012735 41012765 -156182667 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 897 528 16 0 0 chr1 41012765 41012825 -156182607 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 897 654 13 0 0 chr1 41014451 41014526 -156180906 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 897 974 157 6 0 chr1 41016763 41016941 -156178491 + CT-rich Low_complexity Low_complexity 2 180 0 2 897 186 43 0 0 chr1 41016941 41016964 -156178468 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 897 356 209 0 11 chr1 41017344 41017436 -156177996 + GA-rich Low_complexity Low_complexity 1 91 0 2 897 387 0 0 0 chr1 41017947 41017990 -156177442 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 897 23 33 0 0 chr1 41018531 41018561 -156176871 + AT_rich Low_complexity Low_complexity 1 30 0 2 897 275 184 0 11 chr1 41018568 41018656 -156176776 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 897 496 200 8 32 chr1 41018700 41018952 -156176480 + (TA)n Simple_repeat Simple_repeat 1 245 0 2 897 345 232 12 6 chr1 41018971 41019140 -156176292 + (TA)n Simple_repeat Simple_repeat 2 171 0 2 897 303 250 106 42 chr1 41019164 41019496 -156175936 + L1MEc LINE L1 1906 2264 -5070 2 897 434 88 0 14 chr1 41019765 41019834 -156175598 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 897 211 0 0 81 chr1 41020169 41020206 -156175226 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 3 897 738 317 17 37 chr1 41020341 41020639 -156174793 - B4A SINE B4 0 292 1 3 897 950 203 84 76 chr1 41021701 41021952 -156173480 - MTE2a LTR MaLR -1 378 126 3 897 230 312 127 40 chr1 41022366 41022516 -156172916 - MTD LTR MaLR -231 188 26 3 898 189 184 136 62 chr1 41026527 41026608 -156168824 + L2 LINE L2 2369 2455 -964 3 898 405 0 0 0 chr1 41027500 41027545 -156167887 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 898 207 200 0 0 chr1 41029189 41029224 -156166208 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3 898 248 410 83 10 chr1 41030540 41030732 -156164700 + LTR16A LTR ERVL 160 365 -86 3 898 330 87 0 0 chr1 41030946 41030992 -156164440 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 898 2101 79 127 3 chr1 41032059 41032350 -156163082 - ORR1A2 LTR MaLR 0 327 1 4 898 794 258 42 108 chr1 41032400 41032735 -156162697 - Lx8 LINE L1 -25 7448 7136 4 898 1809 174 15 88 chr1 41032855 41033264 -156162168 + ORR1C2 LTR MaLR 6 384 0 4 898 583 291 63 37 chr1 41033375 41033564 -156161868 - MER21B LTR ERV1 -15 848 655 4 898 926 302 87 49 chr1 41033717 41034142 -156161290 - MER21B LTR ERV1 -422 441 1 4 898 207 0 0 0 chr1 41034366 41034389 -156161043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 898 378 61 0 0 chr1 41034465 41034514 -156160918 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 898 1161 89 7 0 chr1 41035201 41035347 -156160085 - B1_Mus2 SINE Alu 0 147 1 4 898 2142 113 23 0 chr1 41035405 41035715 -156159717 - ORR1A2 LTR MaLR 0 327 11 4 898 805 309 64 40 chr1 41035728 41036150 -156159282 + Lx8 LINE L1 6856 7287 -186 4 898 209 0 98 0 chr1 41036712 41036753 -156158679 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 898 236 306 10 48 chr1 41037040 41037061 -156158371 - PB1D10 SINE Alu -8 109 11 5 898 248 269 12 49 chr1 41037061 41037143 -156158289 - ID_B1 SINE B4 -54 170 92 5 898 223 370 19 0 chr1 41037349 41037457 -156157975 + MIR SINE MIR 45 154 -108 5 898 22 0 0 0 chr1 41037564 41037586 -156157846 + AT_rich Low_complexity Low_complexity 1 22 0 5 898 442 295 54 68 chr1 41037892 41038172 -156157260 - Lx8 LINE L1 -2 7471 7196 5 898 2713 287 66 24 chr1 41038216 41038592 -156156840 - Lx8 LINE L1 -409 7064 6686 5 898 2630 113 103 22 chr1 41038592 41039000 -156156432 + BGLII_B LTR ERVK 1 441 0 5 898 2713 287 66 24 chr1 41039000 41039603 -156155829 - Lx8 LINE L1 -788 6685 6043 5 898 311 258 5 157 chr1 41040287 41040356 -156155076 - Tigger7 DNA MER2_type -16 2475 2420 5 898 480 81 47 0 chr1 41040356 41040442 -156154990 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 5 898 311 258 5 157 chr1 41040442 41040476 -156154956 - Tigger7 DNA MER2_type -72 2419 2401 5 898 594 41 0 0 chr1 41040476 41040549 -156154883 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 898 311 258 5 157 chr1 41040549 41040642 -156154790 - Tigger7 DNA MER2_type -91 2400 2308 5 898 409 253 234 15 chr1 41041807 41042008 -156153424 - ORR1D2 LTR MaLR -4 366 122 5 898 348 227 0 20 chr1 41042075 41042228 -156153204 + (TG)n Simple_repeat Simple_repeat 1 150 0 6 898 502 173 8 8 chr1 41042253 41042387 -156153045 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 898 374 300 118 68 chr1 41042404 41042744 -156152688 + ORR1E LTR MaLR 1 357 -2 6 898 309 149 0 0 chr1 41044102 41044169 -156151263 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 898 493 148 47 12 chr1 41044170 41044341 -156151091 + (TCTG)n Simple_repeat Simple_repeat 2 178 0 6 898 199 164 55 0 chr1 41044362 41044435 -156150997 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 6 898 459 304 104 60 chr1 41044441 41044720 -156150712 - B4A SINE B4 -1 291 1 6 898 366 23 0 0 chr1 41046343 41046386 -156149046 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 898 488 93 0 2 chr1 41046490 41046561 -156148871 - tRNA-Lys-AAG tRNA tRNA -6 70 1 6 898 1485 210 152 3 chr1 41046683 41047046 -156148386 + MTD LTR MaLR 3 419 0 6 898 1010 235 95 47 chr1 41047503 41047910 -156147522 - RMER17C LTR ERVK -376 433 3 6 898 445 328 17 0 chr1 41047988 41048107 -156147325 - ID_B1 SINE B4 -102 122 2 6 898 393 395 0 0 chr1 41050901 41051073 -156144359 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 898 2231 89 41 82 chr1 41052846 41053187 -156142245 - ORR1A2 LTR MaLR 0 327 1 7 898 892 146 218 16 chr1 41054185 41054373 -156141059 - URR1A DNA MER1_type 0 226 1 7 898 327 331 50 61 chr1 41054629 41054809 -156140623 + MER5A DNA MER1_type 7 184 -5 7 898 441 0 0 0 chr1 41058474 41058523 -156136909 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 898 486 0 0 0 chr1 41061126 41061180 -156134252 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 7 898 330 248 83 28 chr1 41061211 41061319 -156134113 - PB1D10 SINE Alu 0 117 4 7 898 718 61 35 0 chr1 41061628 41061743 -156133689 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 7 898 452 340 18 36 chr1 41061760 41061925 -156133507 - RSINE1 SINE B4 -2 163 2 7 898 1279 27 7 7 chr1 41062271 41062418 -156133014 + B1_Mus2 SINE Alu 1 147 0 7 898 365 20 41 0 chr1 41062912 41062961 -156132471 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 898 378 298 0 37 chr1 41065352 41065460 -156129972 - PB1D10 SINE Alu -10 107 4 8 898 204 200 0 24 chr1 41067079 41067120 -156128312 - L3 LINE CR1 -1896 2593 2554 8 898 186 43 0 0 chr1 41069232 41069255 -156126177 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 898 448 274 0 9 chr1 41070055 41070169 -156125263 + Lx6 LINE L1 7049 7161 -299 8 898 207 0 0 0 chr1 41070178 41070201 -156125231 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 898 419 250 16 111 chr1 41070203 41070462 -156124970 - RMER4B LTR ERVK -18 567 343 8 898 237 329 0 0 chr1 41070467 41070537 -156124895 + (CAG)n Simple_repeat Simple_repeat 3 72 0 8 898 996 182 79 5 chr1 41070560 41070775 -156124657 - RMER4B LTR ERVK -338 247 17 8 898 574 240 39 0 chr1 41070775 41070904 -156124528 + Lx6 LINE L1 7157 7290 -170 8 898 2101 115 16 0 chr1 41070911 41071225 -156124207 - ORR1A2 LTR MaLR -8 319 1 8 898 1656 39 5 0 chr1 41071230 41071438 -156123994 - MTB LTR MaLR -191 209 1 8 898 806 217 163 0 chr1 41071677 41071861 -156123571 - B3 SINE B2 -2 214 1 9 898 708 106 53 0 chr1 41071986 41072156 -156123276 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 898 245 326 10 0 chr1 41072163 41072261 -156123171 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 9 898 429 29 72 0 chr1 41072816 41072885 -156122547 + (CTAAA)n Simple_repeat Simple_repeat 3 76 0 9 898 756 33 0 0 chr1 41074650 41074741 -156120691 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 898 684 291 56 51 chr1 41075060 41075415 -156120017 - L1MCa LINE L1 -567 5941 5585 9 898 523 289 157 77 chr1 41075469 41075806 -156119626 - Lx8 LINE L1 -29 7444 7081 9 898 739 264 138 37 chr1 41075990 41076481 -156118951 - L1MCa LINE L1 -1560 4761 4221 9 898 251 287 62 47 chr1 41076538 41076666 -156118766 - L1MCa LINE L1 -2102 4219 4090 9 898 197 33 33 0 chr1 41076694 41076724 -156118708 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 9 898 703 272 40 71 chr1 41076902 41077380 -156118052 - L1MCa LINE L1 -2798 3523 3061 9 898 534 80 13 0 chr1 41077386 41077461 -156117971 + RLTR20D LTR ERVK 1 76 -492 9 898 237 202 102 63 chr1 41077477 41077604 -156117828 - Lx LINE L1 -4 7456 7325 9 898 6390 134 51 14 chr1 41077609 41078961 -156116471 - Lx LINE L1 -9 6645 5253 9 898 2310 148 32 5 chr1 41078961 41079367 -156116065 + Lx LINE L1 4848 5264 -619 9 898 2082 177 128 30 chr1 41079367 41079728 -156115704 + RLTR20D LTR ERVK 63 466 -102 1 898 4316 78 0 0 chr1 41079728 41080256 -156115176 + L1Md_T LINE L1 6055 6582 0 1 898 2082 177 128 30 chr1 41080256 41080269 -156115163 + RLTR20D LTR ERVK 467 475 -93 1 898 423 0 0 0 chr1 41080269 41080316 -156115116 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 898 2082 177 128 30 chr1 41080316 41080401 -156115031 + RLTR20D LTR ERVK 476 567 -1 1 898 694 269 49 14 chr1 41080412 41080723 -156114709 - L1MCa LINE L1 -4625 1777 1394 9 898 188 111 28 0 chr1 41080773 41080809 -156114623 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 1 898 618 104 0 0 chr1 41080810 41080906 -156114526 + (TATG)n Simple_repeat Simple_repeat 2 97 0 1 898 400 302 75 21 chr1 41080908 41081231 -156114201 - L1MCa LINE L1 -5290 1218 849 9 898 386 265 208 5 chr1 41081434 41081631 -156113801 - L1MCa LINE L1 -6178 330 94 9 898 345 326 49 22 chr1 41081801 41082068 -156113364 - L1M5 LINE L1 -444 5796 5523 1 898 2316 148 34 44 chr1 41082261 41082671 -156112761 + Lx4B LINE L1 6646 7051 -7 1 898 540 0 0 0 chr1 41083291 41083351 -156112081 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 898 224 50 0 70 chr1 41084894 41084937 -156110495 + (T)n Simple_repeat Simple_repeat 1 40 0 1 898 386 315 14 0 chr1 41085293 41085436 -156109996 + GA-rich Low_complexity Low_complexity 1 145 0 1 898 897 60 0 0 chr1 41087466 41087582 -156107850 + (GAAA)n Simple_repeat Simple_repeat 3 118 0 1 898 2577 86 3 3 chr1 41088119 41088446 -156106986 - ORR1A2 LTR MaLR 0 327 1 1 898 1159 195 28 5 chr1 41088446 41088657 -156106775 + B3 SINE B2 1 216 0 1 898 272 340 11 11 chr1 41088844 41088939 -156106493 + ID_B1 SINE B4 92 186 -38 1 898 1263 55 0 0 chr1 41089064 41089209 -156106223 + B1_Mus2 SINE Alu 2 146 -1 1 898 186 128 0 0 chr1 41089224 41089263 -156106169 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 898 1892 207 106 44 chr1 41089347 41089847 -156105585 - Lx9 LINE L1 0 7644 7114 1 898 186 43 0 0 chr1 41090945 41090968 -156104464 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 898 875 142 6 0 chr1 41092939 41093101 -156102331 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1 898 188 143 24 0 chr1 41093118 41093160 -156102272 + CT-rich Low_complexity Low_complexity 2 44 0 1 898 862 259 18 32 chr1 41094627 41094846 -156100586 + B3 SINE B2 1 216 0 1 898 938 68 27 0 chr1 41095623 41095771 -156099661 + (TA)n Simple_repeat Simple_repeat 2 153 0 1 898 233 211 17 17 chr1 41095796 41095854 -156099578 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 898 345 24 0 0 chr1 41096725 41096767 -156098665 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 898 216 0 0 0 chr1 41096767 41096790 -156098642 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 898 230 318 59 0 chr1 41096925 41097010 -156098422 - LTR85b LTR Gypsy? -10 774 685 1 898 662 237 155 44 chr1 41097381 41097562 -156097870 - B3 SINE B2 -11 205 5 1 898 432 0 0 0 chr1 41097619 41097667 -156097765 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 898 26 30 0 0 chr1 41098383 41098416 -156097016 + AT_rich Low_complexity Low_complexity 1 33 0 1 898 3673 172 76 16 chr1 41100669 41101407 -156094025 + RLTR40 LTR ERVK 26 807 -10 1 898 1174 82 7 0 chr1 41101763 41101909 -156093523 - B1_Mus2 SINE Alu 0 147 1 1 898 1639 181 44 80 chr1 41101950 41102311 -156093121 - ORR1B1 LTR MaLR -8 386 39 1 898 1108 162 49 21 chr1 41102365 41102578 -156092854 + ORR1B1 LTR MaLR 183 386 -8 1 898 542 186 52 0 chr1 41102764 41102861 -156092571 + B1_Mus2 SINE Alu 41 142 -5 1 898 285 29 0 0 chr1 41102870 41102904 -156092528 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 898 24 32 0 0 chr1 41103026 41103057 -156092375 + AT_rich Low_complexity Low_complexity 1 31 0 1 898 1175 67 0 0 chr1 41103133 41103268 -156092164 + B1_Mus1 SINE Alu 1 135 -13 1 898 405 0 0 0 chr1 41103268 41103313 -156092119 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 898 9194 177 39 42 chr1 41103627 41105959 -156089473 + L1_Mur2 LINE L1 889 3212 -2665 1 898 221 352 47 61 chr1 41106416 41106628 -156088804 + L2 LINE L2 2474 2682 -737 1 898 699 12 0 0 chr1 41106654 41106734 -156088698 + (CGA)n Simple_repeat Simple_repeat 3 82 0 1 898 408 269 19 9 chr1 41106825 41106930 -156088502 - B1F2 SINE Alu -10 139 34 1 898 21 0 0 0 chr1 41107753 41107774 -156087658 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 2746 94 0 0 chr1 41108040 41108411 -156087021 - L1_Mur1 LINE L1 -825 5061 4691 1 898 9577 62 20 74 chr1 41108412 41109757 -156085675 + Lx3_Mus LINE L1 5737 7009 0 1 898 718 238 117 20 chr1 41110377 41110574 -156084858 + B3 SINE B2 1 216 0 1 898 182 116 0 23 chr1 41111329 41111373 -156084059 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 898 204 342 25 41 chr1 41113624 41113746 -156081686 + MIRc SINE MIR 37 156 -112 1 898 29 0 0 0 chr1 41113890 41113919 -156081513 + AT_rich Low_complexity Low_complexity 1 29 0 1 898 249 33 0 0 chr1 41114083 41114113 -156081319 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 898 180 0 0 0 chr1 41114113 41114133 -156081299 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 898 2438 213 29 18 chr1 41114184 41114696 -156080736 + Lx6 LINE L1 6468 6985 -475 1 898 582 186 0 0 chr1 41114728 41114868 -156080564 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 898 546 340 25 32 chr1 41114888 41115165 -156080267 - MLT-int LTR MaLR -1174 561 287 1 898 933 209 47 24 chr1 41115166 41115208 -156080224 + B3 SINE B2 1 43 -173 1 898 207 0 0 0 chr1 41115208 41115231 -156080201 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 898 933 209 47 24 chr1 41115231 41115399 -156080033 + B3 SINE B2 44 216 0 1 898 399 292 0 0 chr1 41116579 41116747 -156078685 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 898 658 331 115 13 chr1 41116801 41117183 -156078249 - MT2A LTR ERVL -112 421 1 1 898 341 276 325 0 chr1 41118614 41118777 -156076655 - B3 SINE B2 0 216 1 1 898 258 56 0 0 chr1 41120592 41120628 -156074804 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 898 227 304 103 47 chr1 41121084 41121191 -156074241 + MER44B DNA MER2_type 3 115 -435 1 898 231 272 22 0 chr1 41121215 41121307 -156074125 + MER44B DNA MER2_type 365 458 -92 1 898 1177 158 113 0 chr1 41121679 41121882 -156073550 + URR1A DNA MER1_type 1 226 0 1 898 12165 62 1 5 chr1 41123607 41125855 -156069577 - L1Md_F2 LINE L1 0 6582 4346 1 898 200 328 0 29 chr1 41126420 41126489 -156068943 + CT-rich Low_complexity Low_complexity 4 70 0 1 898 645 22 33 0 chr1 41126566 41126657 -156068775 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1 898 497 204 138 30 chr1 41126657 41126815 -156068617 - B2_Mm2 SINE B2 -18 177 1 1 898 258 56 0 0 chr1 41127140 41127176 -156068256 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 898 359 127 48 0 chr1 41127764 41127827 -156067605 + LTRIS5 LTR ERV1 1 66 -381 1 898 1127 181 16 48 chr1 41127812 41128061 -156067371 + LTRIS5 LTR ERV1 168 408 -39 1 898 5870 235 38 46 chr1 41128066 41130540 -156064892 + MuRRS4-int LTR ERV1 47 2434 -2256 1 898 4546 255 20 10 chr1 41130536 41131798 -156063634 + MuRRS4-int LTR ERV1 3381 5613 -1943 1 898 1128 187 78 0 chr1 41131919 41132138 -156063294 + MuRRS4-int LTR ERV1 4455 4690 0 1 898 1140 194 50 40 chr1 41132138 41132467 -156062965 + LTRIS5 LTR ERV1 1 447 0 1 898 9578 23 0 6 chr1 41132576 41133687 -156061745 - L1Md_T LINE L1 -553 5330 4227 1 898 2509 11 0 0 chr1 41133674 41133951 -156061481 + L1Md_T LINE L1 5310 5586 -297 1 898 8962 33 1 0 chr1 41133952 41134946 -156060486 + L1Md_T LINE L1 5588 6582 0 1 898 2598 140 47 8 chr1 41135478 41135880 -156059552 + MTC LTR MaLR 1 418 -3 1 898 2347 184 56 44 chr1 41136130 41136680 -156058752 + RLTR20B3 LTR ERVK 21 577 0 1 898 1580 318 67 40 chr1 41137475 41137595 -156057837 - Lx9 LINE L1 -8 7465 7338 1 898 585 64 0 0 chr1 41137595 41137673 -156057759 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 898 2037 281 47 49 chr1 41137673 41138431 -156057001 - Lx9 LINE L1 -183 7461 6564 1 898 887 248 78 36 chr1 41138431 41138762 -156056670 - RLTR15 LTR ERVK -12 347 3 1 898 1335 278 9 14 chr1 41138764 41139114 -156056318 - Lx9 LINE L1 -926 6718 6371 1 898 2291 179 62 7 chr1 41139114 41139536 -156055896 + MT2A LTR ERVL 12 456 -77 1 898 438 36 0 0 chr1 41139537 41139593 -156055839 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 898 441 113 0 0 chr1 41139602 41139664 -156055768 - MTC LTR MaLR -6 413 352 1 898 562 172 0 32 chr1 41139666 41139852 -156055580 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 898 1529 221 38 29 chr1 41139852 41140193 -156055239 - MTC LTR MaLR -77 344 1 1 898 238 119 0 0 chr1 41140215 41140257 -156055175 + MT2A LTR ERVL 490 531 -2 1 898 1818 219 68 11 chr1 41140427 41140880 -156054552 - RLTR11A2 LTR ERVK -48 479 1 1 898 269 169 0 25 chr1 41140894 41140973 -156054459 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1 898 401 317 116 21 chr1 41141628 41141912 -156053520 + L1MCa LINE L1 23 333 -6175 1 898 275 302 23 0 chr1 41141976 41142062 -156053370 + L1MCa LINE L1 3962 4049 -2272 1 898 251 274 20 31 chr1 41142158 41142256 -156053176 + Lx7 LINE L1 7581 7677 -19 1 898 2480 80 101 0 chr1 41142265 41142591 -156052841 + RLTR10D LTR ERVK 1 359 0 1 898 342 241 209 62 chr1 41142672 41142849 -156052583 + RMER4B LTR ERVK 17 219 -247 1 898 508 233 284 14 chr1 41142875 41143093 -156052339 + RMER4B LTR ERVK 267 543 -42 1 898 1634 289 96 51 chr1 41143460 41144124 -156051308 + Lx8 LINE L1 6634 7327 -146 1 898 598 282 37 122 chr1 41144150 41144184 -156051248 + B3A SINE B2 2 20 -178 1 898 1076 56 14 0 chr1 41144184 41144327 -156051105 + L1Md_F2 LINE L1 6438 6582 0 1 898 598 282 37 122 chr1 41144327 41144506 -156050926 + B3A SINE B2 21 197 -1 1 898 243 237 13 26 chr1 41144553 41144631 -156050801 + Lx8 LINE L1 7394 7470 -3 1 898 825 116 91 0 chr1 41144857 41144978 -156050454 + B1_Mus1 SINE Alu 2 133 -15 1 898 3730 49 16 68 chr1 41144978 41145479 -156049953 + IAPLTR2_Mm LTR ERVK 1 475 0 1 898 497 139 0 196 chr1 41145480 41145623 -156049809 + IAPEz-int LTR ERVK 9 123 -6358 1 898 232 219 0 0 chr1 41145623 41145664 -156049768 + RLTR27 LTR ERVK 231 271 -38 1 898 235 321 0 0 chr1 41145693 41145746 -156049686 + RLTR27 LTR ERVK 223 275 -34 1 898 3640 82 20 39 chr1 41145746 41146399 -156049033 + IAPEz-int LTR ERVK 168 662 -5819 1 898 2732 64 0 3 chr1 41146399 41146742 -156048690 + IAPEz-int LTR ERVK 1359 1700 -4781 1 898 6516 62 11 6 chr1 41146737 41147560 -156047872 + IAPEz-int LTR ERVK 5653 6479 -2 1 898 3301 53 83 72 chr1 41147562 41148032 -156047400 + IAPLTR2_Mm LTR ERVK 1 475 0 1 898 306 67 0 0 chr1 41148051 41148096 -156047336 + (TAAAAA)n Simple_repeat Simple_repeat 2 46 0 1 898 487 306 108 14 chr1 41148158 41148437 -156046995 + L1MDa LINE L1 49 353 -6280 1 898 295 324 74 100 chr1 41149071 41149710 -156045722 + L1MDa LINE L1 1119 1740 -4893 1 898 2293 182 46 9 chr1 41149910 41150343 -156045089 - Lx5 LINE L1 -494 6556 6108 1 898 506 284 21 74 chr1 41150331 41150521 -156044911 - Lx8 LINE L1 -557 6916 6737 1 898 1538 152 12 0 chr1 41150515 41150771 -156044661 - Lx5 LINE L1 -951 6099 5841 1 898 501 17 0 0 chr1 41150946 41151004 -156044428 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 898 377 327 55 36 chr1 41151183 41151402 -156044030 + L1MDa LINE L1 2428 2650 -3983 1 898 581 274 33 95 chr1 41151557 41151767 -156043665 + B3A SINE B2 2 198 0 1 898 266 200 358 0 chr1 41151794 41151914 -156043518 + L1MDa LINE L1 4005 4167 -2370 1 898 347 271 168 34 chr1 41152011 41152284 -156043148 + L1MDa LINE L1 4331 4640 -1897 1 898 243 0 0 0 chr1 41152284 41152311 -156043121 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 898 357 174 0 0 chr1 41152312 41152410 -156043022 + GA-rich Low_complexity Low_complexity 1 98 0 1 898 1628 305 48 13 chr1 41152719 41153263 -156042169 + Lx8 LINE L1 6453 7015 -458 1 898 664 294 73 43 chr1 41153266 41153483 -156041949 + Lx8 LINE L1 7137 7357 -116 1 898 2283 150 49 5 chr1 41153483 41153851 -156041581 - ORR1C2 LTR MaLR 0 384 1 1 898 664 294 73 43 chr1 41153851 41153960 -156041472 + Lx8 LINE L1 7358 7473 0 1 898 810 159 11 17 chr1 41153996 41154175 -156041257 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 2 898 305 285 54 128 chr1 41154244 41154634 -156040798 + L1ME2 LINE L1 5618 5978 -186 2 898 1923 133 14 0 chr1 41154641 41154934 -156040498 + ORR1A3 LTR MaLR 22 318 -8 2 898 317 268 90 23 chr1 41154939 41155132 -156040300 + L1_Mur2 LINE L1 4970 5174 -673 2 898 333 0 0 0 chr1 41155132 41155169 -156040263 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 898 305 315 142 22 chr1 41155169 41155342 -156040090 + L1_Mur2 LINE L1 5175 5380 -467 2 898 477 265 56 56 chr1 41155342 41155502 -156039930 + RSINE1 SINE B4 2 161 -4 2 898 888 87 0 0 chr1 41155691 41155818 -156039614 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 898 554 252 8 8 chr1 41155830 41155950 -156039482 - RSINE1 SINE B4 -41 124 5 2 898 231 36 0 0 chr1 41155956 41155984 -156039448 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 898 927 51 0 0 chr1 41156255 41156372 -156039060 + (TTCTC)n Simple_repeat Simple_repeat 4 120 0 2 898 1170 84 0 0 chr1 41156383 41156526 -156038906 - B1_Mus1 SINE Alu -1 147 5 2 899 1197 317 110 44 chr1 41156617 41157618 -156037814 - L1M2 LINE L1 -863 5280 4214 2 899 259 78 19 19 chr1 41157696 41157748 -156037684 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 899 531 43 0 0 chr1 41157903 41157973 -156037459 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 899 327 317 19 65 chr1 41157975 41158130 -156037302 - B4A SINE B4 -144 148 1 2 899 394 154 22 11 chr1 41158200 41158292 -156037140 + (TATG)n Simple_repeat Simple_repeat 4 96 0 2 899 3224 155 11 30 chr1 41158728 41159261 -156036171 - Lx LINE L1 -1 6653 6131 2 899 529 288 18 54 chr1 41160049 41160273 -156035159 - L1M5 LINE L1 -843 5303 5088 2 899 246 250 37 24 chr1 41160389 41160471 -156034961 - PB1 SINE Alu -3 124 42 2 899 708 298 0 22 chr1 41161363 41161548 -156033884 - B3A SINE B2 -17 181 1 2 899 441 236 24 12 chr1 41162062 41162229 -156033203 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2 899 969 220 16 11 chr1 41162408 41162592 -156032840 - B3 SINE B2 -31 185 1 2 899 207 0 0 0 chr1 41164401 41164424 -156031008 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 899 405 337 6 11 chr1 41164489 41164666 -156030766 + GA-rich Low_complexity Low_complexity 5 180 0 2 899 1179 130 48 11 chr1 41164685 41164872 -156030560 + B2_Mm2 SINE B2 1 194 -1 2 899 290 298 9 19 chr1 41164887 41164993 -156030439 + CT-rich Low_complexity Low_complexity 2 106 0 2 899 297 75 0 0 chr1 41165872 41165912 -156029520 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 899 22 35 0 0 chr1 41167210 41167239 -156028193 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 263 373 67 27 chr1 41167559 41167782 -156027650 - MER2 DNA MER2_type -27 318 87 2 899 523 193 13 73 chr1 41168872 41169023 -156026409 + L1MA6 LINE L1 3690 3831 -2312 2 899 249 230 80 13 chr1 41169019 41169094 -156026338 + L1MA6 LINE L1 4019 4098 -2045 2 899 1311 252 194 49 chr1 41169111 41169759 -156025673 + L1MA6 LINE L1 4984 5757 -543 2 899 1233 77 0 0 chr1 41169759 41169929 -156025503 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 2 899 1311 291 147 21 chr1 41169929 41170250 -156025182 + L1MA6 LINE L1 5758 6082 -218 2 899 195 42 0 0 chr1 41170250 41170274 -156025158 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2 899 1311 291 147 21 chr1 41170274 41170441 -156024991 + L1MA6 LINE L1 6083 6277 -23 2 899 411 21 0 0 chr1 41171190 41171238 -156024194 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 899 228 308 0 13 chr1 41172322 41172401 -156023031 + CT-rich Low_complexity Low_complexity 4 81 0 2 899 180 152 0 0 chr1 41173907 41173940 -156021492 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 2 899 588 277 95 162 chr1 41174111 41174615 -156020817 - RLTR11B LTR ERVK -37 491 1 2 899 927 250 115 26 chr1 41174976 41175295 -156020137 + ORR1E LTR MaLR 10 419 -2 2 899 183 114 0 0 chr1 41175457 41175492 -156019940 + (T)n Simple_repeat Simple_repeat 1 35 0 2 899 23 0 0 0 chr1 41176460 41176483 -156018949 + AT_rich Low_complexity Low_complexity 1 23 0 2 899 367 44 0 0 chr1 41176650 41176695 -156018737 - HAL1-3A_ME LINE L1 -838 2020 1976 2 899 300 240 0 0 chr1 41176698 41176798 -156018634 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 899 25 75 0 0 chr1 41179757 41179810 -156015622 + AT_rich Low_complexity Low_complexity 1 53 0 2 899 21 0 0 0 chr1 41180010 41180031 -156015401 + AT_rich Low_complexity Low_complexity 1 21 0 2 899 27 0 0 0 chr1 41181418 41181445 -156013987 + AT_rich Low_complexity Low_complexity 1 27 0 2 899 647 279 19 99 chr1 41182363 41182574 -156012858 + B3A SINE B2 1 194 -4 2 899 1272 106 56 0 chr1 41184319 41184498 -156010934 + B2_Mm1t SINE B2 1 189 -4 2 899 1833 116 68 78 chr1 41185955 41186146 -156009286 + RMER17C LTR ERVK 3 187 -223 2 899 1022 24 23 40 chr1 41186146 41186322 -156009110 + (TTCTC)n Simple_repeat Simple_repeat 5 177 0 2 899 1833 116 68 78 chr1 41186322 41186542 -156008890 + RMER17C LTR ERVK 188 410 0 2 899 249 333 72 90 chr1 41186776 41186998 -156008434 - RSINE1 SINE B4 -13 279 87 2 899 748 261 34 25 chr1 41187244 41187448 -156007984 - B3 SINE B2 -6 210 5 2 899 951 180 279 62 chr1 41189566 41189903 -156005529 - RMER17C LTR ERVK 0 410 1 2 899 250 91 36 0 chr1 41190025 41190080 -156005352 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 2 899 567 53 0 0 chr1 41190217 41190292 -156005140 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 899 974 167 25 30 chr1 41190292 41190483 -156004949 + RMER17C LTR ERVK 220 410 0 2 899 803 272 59 123 chr1 41190861 41191234 -156004198 + MER89 LTR ERV1 2 350 -209 2 899 355 318 105 38 chr1 41192112 41192321 -156003111 - MER2 DNA MER2_type -119 226 4 2 899 192 77 0 0 chr1 41192446 41192472 -156002960 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 2 899 341 265 7 93 chr1 41192474 41192624 -156002808 - Lx6 LINE L1 -43 7417 7281 2 899 1373 231 0 0 chr1 41192633 41192875 -156002557 + Lx5 LINE L1 6594 6835 -215 2 899 2026 193 69 54 chr1 41193037 41193590 -156001842 + RLTR31_Mm LTR ERVK 1 561 0 2 899 22 35 0 0 chr1 41194292 41194321 -156001111 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 22 56 0 0 chr1 41194399 41194435 -156000997 + AT_rich Low_complexity Low_complexity 1 36 0 2 899 269 242 50 168 chr1 41195409 41195528 -155999904 - B1F SINE Alu -29 120 16 2 899 218 345 80 11 chr1 41195860 41195948 -155999484 + B4 SINE B4 7 100 -192 2 899 299 291 58 0 chr1 41195960 41196017 -155999415 + B4A SINE B4 131 221 -71 2 899 569 224 171 64 chr1 41196017 41196046 -155999386 + MTC LTR MaLR 57 85 -311 2 899 396 0 0 0 chr1 41196046 41196090 -155999342 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 899 872 172 214 6 chr1 41196090 41196294 -155999138 + MTC LTR MaLR 86 340 -81 2 899 362 140 0 0 chr1 41196606 41196663 -155998769 - URR1B DNA MER1_type 0 225 169 2 899 413 305 85 0 chr1 41196973 41197114 -155998318 + MER46C DNA MER2_type 164 316 -22 2 899 321 232 186 29 chr1 41198193 41198295 -155997137 + ID_B1 SINE B4 78 195 -29 2 899 346 180 34 0 chr1 41198318 41198407 -155997025 + GA-rich Low_complexity Low_complexity 2 93 0 2 899 1046 89 24 0 chr1 41198407 41198576 -155996856 + (GGA)n Simple_repeat Simple_repeat 3 175 0 2 899 335 267 65 48 chr1 41198624 41198765 -155996667 + B1F SINE Alu 3 145 -4 2 899 1977 208 89 30 chr1 41199890 41200362 -155995070 - RMER15 LTR ERVL -49 526 27 2 899 275 232 14 42 chr1 41200372 41200444 -155994988 - RMER15 LTR ERVL -505 70 1 2 899 315 274 47 47 chr1 41200707 41200814 -155994618 + PB1D10 SINE Alu 11 117 0 2 899 195 382 0 22 chr1 41201033 41201124 -155994308 - MIRb SINE MIR -68 200 112 2 899 307 240 30 10 chr1 41202717 41202818 -155992614 + GA-rich Low_complexity Low_complexity 3 105 0 2 899 902 76 0 8 chr1 41202979 41203112 -155992320 + (GA)n Simple_repeat Simple_repeat 1 132 0 2 899 450 0 0 0 chr1 41205121 41205171 -155990261 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 899 871 143 0 0 chr1 41205220 41205346 -155990086 - B3 SINE B2 -89 127 2 2 899 2565 84 6 0 chr1 41205639 41205960 -155989472 - ORR1A2 LTR MaLR 0 327 5 2 899 1403 152 42 0 chr1 41207161 41207378 -155988054 + URR1A DNA MER1_type 1 226 0 2 899 336 103 0 0 chr1 41207426 41207484 -155987948 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 899 599 45 17 43 chr1 41209941 41210058 -155985374 + (GAGAA)n Simple_repeat Simple_repeat 5 118 0 2 899 459 0 0 0 chr1 41210789 41210840 -155984592 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 899 252 226 60 70 chr1 41211600 41211718 -155983714 - MIRc SINE MIR -104 158 42 2 899 360 0 0 0 chr1 41211956 41211996 -155983436 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 899 23 0 0 0 chr1 41212117 41212140 -155983292 + AT_rich Low_complexity Low_complexity 1 23 0 2 899 867 57 0 0 chr1 41214259 41214381 -155981051 + (GGAA)n Simple_repeat Simple_repeat 1 122 0 2 899 201 121 0 0 chr1 41214544 41214577 -155980855 + (C)n Simple_repeat Simple_repeat 1 33 0 2 899 207 0 0 0 chr1 41217232 41217255 -155978177 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 899 1380 50 0 22 chr1 41217317 41217501 -155977931 - L1Md_F2 LINE L1 0 6582 6403 2 899 2299 125 22 9 chr1 41221094 41221416 -155974016 - ORR1A3 LTR MaLR 0 326 1 2 899 380 235 29 58 chr1 41221865 41221969 -155973463 - PB1D7 SINE Alu -1 119 19 2 899 450 0 0 0 chr1 41223774 41223824 -155971608 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 899 208 135 0 0 chr1 41226276 41226313 -155969119 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2 899 460 381 6 12 chr1 41226518 41226680 -155968752 + RSINE1 SINE B4 3 163 -2 2 899 216 275 111 81 chr1 41226529 41226727 -155968705 + B3 SINE B2 13 216 0 2 899 1166 185 98 51 chr1 41227259 41227555 -155967877 + RLTR20C LTR ERVK 1 310 -224 2 899 551 270 66 0 chr1 41227550 41227615 -155967817 + RLTR20C LTR ERVK 417 482 -96 2 899 222 37 0 0 chr1 41227615 41227642 -155967790 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 899 551 270 66 0 chr1 41227642 41227728 -155967704 + RLTR20C LTR ERVK 483 577 -1 2 899 512 65 32 21 chr1 41228619 41228714 -155966718 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 2 899 26 0 0 0 chr1 41228902 41228928 -155966504 + AT_rich Low_complexity Low_complexity 1 26 0 3 899 473 0 18 0 chr1 41230445 41230502 -155964930 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 899 233 276 83 28 chr1 41230684 41230792 -155964640 + PB1D10 SINE Alu 1 114 -3 3 899 384 161 0 67 chr1 41231082 41231275 -155964157 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 899 382 185 0 36 chr1 41231303 41231443 -155963989 + (CA)n Simple_repeat Simple_repeat 1 135 0 3 899 366 127 0 0 chr1 41231443 41231498 -155963934 + HAL1-3A_ME LINE L1 1973 2027 -831 3 899 237 243 0 41 chr1 41231686 41231759 -155963673 + L1MDa LINE L1 1556 1625 -5008 3 899 1764 155 140 2 chr1 41232113 41232520 -155962912 + L1_Mur3 LINE L1 4929 5391 -489 3 899 1487 230 154 47 chr1 41232520 41232948 -155962484 + RMER15 LTR ERVL 42 515 -60 3 899 23057 132 33 64 chr1 41233431 41238474 -155956958 + Lx4A LINE L1 587 5439 -438 3 899 198 0 0 0 chr1 41238474 41238496 -155956936 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 899 23057 130 42 42 chr1 41238496 41239317 -155956115 + Lx4A LINE L1 5440 6297 -761 3 899 491 264 49 16 chr1 41239317 41239440 -155955992 + ETnERV2-int LTR ERVK 7075 7201 -205 3 899 512 163 0 0 chr1 41240108 41240194 -155955238 + Lx4A LINE L1 6287 6372 -686 3 899 1105 123 154 24 chr1 41240194 41240427 -155955005 - ORR1A2 LTR MaLR -135 284 1 3 899 5296 164 65 78 chr1 41240429 41241702 -155953730 - ORR1A2-int LTR MaLR -1 1257 1 3 899 2037 93 20 88 chr1 41241707 41241990 -155953442 - ORR1A2 LTR MaLR -8 319 45 3 899 1134 90 11 6 chr1 41241990 41242169 -155953263 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 899 1138 102 72 0 chr1 41242169 41242336 -155953096 - B2_Mm2 SINE B2 -15 180 2 3 899 2037 93 20 88 chr1 41242336 41242393 -155953039 - ORR1A2 LTR MaLR -283 44 2 3 899 2226 175 15 29 chr1 41242394 41242848 -155952584 + Lx4A LINE L1 6600 7047 -11 3 899 842 308 67 36 chr1 41243109 41243439 -155951993 - MER2 DNA MER2_type -1 344 5 3 899 208 125 0 48 chr1 41246122 41246164 -155949268 + A-rich Low_complexity Low_complexity 1 40 0 3 899 225 94 0 0 chr1 41248067 41248099 -155947333 + (T)n Simple_repeat Simple_repeat 1 32 0 3 899 574 213 218 0 chr1 41248312 41248363 -155947069 - B3 SINE B2 -4 212 157 3 899 281 26 26 0 chr1 41248363 41248401 -155947031 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 899 574 213 218 0 chr1 41248401 41248523 -155946909 - B3 SINE B2 -60 156 2 3 899 574 280 63 26 chr1 41248609 41248800 -155946632 + B3A SINE B2 1 198 0 3 899 309 323 30 0 chr1 41249082 41249181 -155946251 - L1M5 LINE L1 -658 5582 5481 3 899 523 243 98 56 chr1 41249761 41249815 -155945617 - CYRA11_Mm Unknown Y-chromosome -242 375 214 3 899 865 141 7 0 chr1 41249815 41249957 -155945475 + URR1B DNA MER1_type 83 225 0 3 899 523 243 98 56 chr1 41249957 41249975 -155945457 - CYRA11_Mm Unknown Y-chromosome -242 213 153 3 899 369 93 0 0 chr1 41250772 41250826 -155944606 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 899 189 288 99 12 chr1 41251776 41251857 -155943575 + MIR SINE MIR 110 197 -65 3 899 303 0 74 37 chr1 41252454 41252508 -155942924 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 3 899 6387 136 20 7 chr1 41252508 41254327 -155941105 - Lx LINE L1 -33 6621 4777 3 899 687 25 0 0 chr1 41254987 41255068 -155940364 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 899 1002 115 11 57 chr1 41255141 41255316 -155940116 - URR1A DNA MER1_type -1 225 59 3 899 303 71 0 0 chr1 41255710 41255752 -155939680 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 899 432 0 0 0 chr1 41256756 41256804 -155938628 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 899 236 212 25 0 chr1 41257251 41257331 -155938101 + (CATA)n Simple_repeat Simple_repeat 2 83 0 3 899 375 23 0 0 chr1 41257349 41257393 -155938039 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 899 287 295 132 18 chr1 41257402 41257516 -155937916 + MER90a LTR ERV1 67 193 -421 3 899 181 57 57 0 chr1 41257624 41257659 -155937773 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 3 899 22 0 0 0 chr1 41257723 41257745 -155937687 + AT_rich Low_complexity Low_complexity 1 22 0 3 899 363 274 40 92 chr1 41262049 41262298 -155933134 + L1MA9 LINE L1 5812 6047 -265 3 899 2612 77 3 0 chr1 41262501 41262853 -155932579 + L1_Mus4 LINE L1 6283 6635 -1 3 899 1353 148 23 0 chr1 41263567 41263784 -155931648 - URR1B DNA MER1_type -2 223 2 3 899 1838 202 60 10 chr1 41263985 41264384 -155931048 + MTD LTR MaLR 1 419 0 3 899 216 0 0 0 chr1 41264467 41264491 -155930941 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 899 339 315 28 9 chr1 41264675 41264784 -155930648 - B3 SINE B2 0 216 106 3 899 513 269 31 20 chr1 41265044 41265228 -155930204 - B3A SINE B2 -32 184 1 3 899 636 306 7 0 chr1 41266714 41266861 -155928571 + B1_Mur2 SINE Alu 1 148 -1 3 899 5358 91 35 12 chr1 41267109 41267903 -155927529 + RLTR13C2 LTR ERVK 1 1033 0 3 899 26 50 0 0 chr1 41268624 41268664 -155926768 + AT_rich Low_complexity Low_complexity 1 40 0 3 899 287 309 69 11 chr1 41268697 41268810 -155926622 + B1F1 SINE Alu 3 108 -41 3 899 210 343 60 0 chr1 41268845 41268912 -155926520 + ID4_ SINE ID 2 72 -11 3 899 760 290 142 39 chr1 41269726 41270056 -155925376 + MTE2b LTR MaLR 16 379 0 3 899 202 118 39 19 chr1 41270063 41270115 -155925317 + A-rich Low_complexity Low_complexity 4 56 0 3 899 2850 57 141 137 chr1 41270436 41270946 -155924486 + RLTR1B LTR ERV1 1 512 0 3 899 488 323 121 18 chr1 41272010 41272234 -155923198 - MLT1E1 LTR MaLR -2 652 406 3 899 222 91 0 0 chr1 41274469 41274502 -155920930 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 899 210 71 0 0 chr1 41274514 41274542 -155920890 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 899 216 262 0 0 chr1 41275171 41275213 -155920219 + (CATG)n Simple_repeat Simple_repeat 3 44 0 3 899 2097 108 12 60 chr1 41276155 41276490 -155918942 - ORR1A2 LTR MaLR -8 319 1 3 899 928 109 23 6 chr1 41277573 41277749 -155917683 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 899 2095 94 24 51 chr1 41278910 41279245 -155916187 - Lx2 LINE L1 0 6997 6672 3 899 3905 168 12 81 chr1 41280960 41281235 -155914197 + L1_Mus4 LINE L1 5062 5321 -562 3 899 1042 109 0 39 chr1 41281235 41281388 -155914044 - B1_Mm SINE Alu 0 147 1 3 899 7333 101 3 19 chr1 41281388 41282709 -155912723 + L1_Mus4 LINE L1 5322 6630 -6 3 899 6881 78 2 7 chr1 41283012 41283976 -155911456 + L1_Mus1 LINE L1 5609 6567 0 3 899 332 314 45 28 chr1 41285354 41285476 -155909956 - PB1D7 SINE Alu -18 131 1 3 899 295 248 84 92 chr1 41285726 41285868 -155909564 - Lx9 LINE L1 -1204 6440 6300 3 899 398 102 0 14 chr1 41285917 41285987 -155909445 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 899 2852 260 82 42 chr1 41286142 41286810 -155908622 - Lx9 LINE L1 -1671 5973 5238 3 899 3686 81 8 0 chr1 41286810 41287330 -155908102 - L1_Mus3 LINE L1 0 6638 6132 3 112 2852 258 87 45 chr1 41287330 41287949 -155907483 - Lx9 LINE L1 -610 5237 4593 3 900 581 241 160 30 chr1 41287957 41288325 -155907107 - Lx9 LINE L1 -2606 3241 2826 3 900 1823 274 49 43 chr1 41288321 41288424 -155907008 + L1_Rod LINE L1 1996 2093 -3754 3 900 614 233 204 0 chr1 41288424 41288600 -155906832 + B3 SINE B2 1 212 -4 3 900 1823 274 49 43 chr1 41288600 41289310 -155906122 + L1_Rod LINE L1 2094 2814 -3033 3 900 300 322 86 73 chr1 41289367 41289612 -155905820 - L1M5 LINE L1 -2199 3947 3700 3 900 339 25 0 0 chr1 41289982 41290022 -155905410 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 900 311 329 63 66 chr1 41290025 41290328 -155905104 - L1M5 LINE L1 -3128 3018 2717 3 900 298 172 16 0 chr1 41290795 41290859 -155904573 - Lx8 LINE L1 -2 7471 7407 3 900 189 0 0 0 chr1 41293686 41293707 -155901725 + (T)n Simple_repeat Simple_repeat 1 21 0 3 900 337 318 136 4 chr1 41294061 41294326 -155901106 + L1M3 LINE L1 4927 5226 -914 3 900 953 286 67 36 chr1 41294425 41294784 -155900648 + MTEb LTR MaLR 1 370 -9 3 900 237 372 8 34 chr1 41295167 41295284 -155900148 + LTR86B2 LTR ERVL 4 117 -370 3 900 1143 68 0 0 chr1 41295353 41295499 -155899933 - B1_Mus1 SINE Alu -1 147 2 3 900 389 250 26 18 chr1 41295748 41295862 -155899570 + HAL1-2a_MD LINE L1 2399 2513 -511 3 900 21 57 0 0 chr1 41295865 41295900 -155899532 + AT_rich Low_complexity Low_complexity 1 35 0 3 900 887 279 81 64 chr1 41296382 41296742 -155898690 + MTEa LTR MaLR 6 371 -8 3 900 22 0 0 0 chr1 41297832 41297854 -155897578 + GC_rich Low_complexity Low_complexity 1 22 0 3 900 205 195 0 0 chr1 41299247 41299288 -155896144 + T-rich Low_complexity Low_complexity 1 41 0 3 900 770 204 0 0 chr1 41299289 41299436 -155895996 - B1_Mur2 SINE Alu -1 148 2 3 900 256 401 47 7 chr1 41299832 41299980 -155895452 - MIR SINE MIR -100 162 9 3 900 383 265 0 0 chr1 41300012 41300110 -155895322 - MamSINE1 SINE tRNA -163 127 30 3 900 441 0 0 0 chr1 41300321 41300370 -155895062 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 900 675 326 97 38 chr1 41300722 41301012 -155894420 - MER44B DNA MER2_type -243 307 1 3 900 231 303 13 0 chr1 41301777 41301853 -155893579 + GA-rich Low_complexity Low_complexity 3 79 0 3 900 233 189 75 0 chr1 41302139 41302192 -155893240 - B1F SINE Alu -2 147 91 3 900 652 243 154 29 chr1 41302489 41302735 -155892697 + B4A SINE B4 4 280 -12 3 900 438 69 0 0 chr1 41302735 41302793 -155892639 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 900 308 307 183 63 chr1 41302806 41302997 -155892435 - B3 SINE B2 0 216 3 3 900 4588 150 72 53 chr1 41303312 41304184 -155891248 + RMER19B LTR ERVK 10 898 -4 3 900 523 212 25 17 chr1 41304320 41304440 -155890992 - B3 SINE B2 -94 122 2 3 900 21 36 0 0 chr1 41304651 41304679 -155890753 + AT_rich Low_complexity Low_complexity 1 28 0 3 900 386 20 20 0 chr1 41305590 41305641 -155889791 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3 900 564 186 0 0 chr1 41305679 41305792 -155889640 + (TA)n Simple_repeat Simple_repeat 2 114 0 3 900 301 301 44 78 chr1 41305792 41305997 -155889435 - L1MEg LINE L1 -5103 981 784 3 900 228 88 35 17 chr1 41306722 41306780 -155888652 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 3 900 1153 69 0 0 chr1 41306782 41306927 -155888505 - B1_Mus2 SINE Alu -2 145 1 3 900 604 236 61 58 chr1 41307258 41307604 -155887828 + Lx9 LINE L1 7298 7644 0 4 900 1687 155 62 7 chr1 41307733 41308039 -155887393 - RLTR17 LTR ERVK -16 676 354 4 900 238 333 0 0 chr1 41308040 41308100 -155887332 - PB1D10 SINE Alu -57 60 1 4 900 23 33 0 0 chr1 41308109 41308139 -155887293 + AT_rich Low_complexity Low_complexity 1 30 0 4 900 831 139 24 0 chr1 41308237 41308402 -155887030 + (CATA)n Simple_repeat Simple_repeat 3 171 0 4 900 210 171 0 0 chr1 41308401 41308442 -155886990 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 900 874 292 64 51 chr1 41308442 41308483 -155886949 - Lx7 LINE L1 -439 7257 7218 4 900 180 0 0 0 chr1 41308483 41308503 -155886929 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 900 874 292 64 51 chr1 41308503 41308915 -155886517 - Lx7 LINE L1 -479 7217 6800 4 900 600 305 39 0 chr1 41309318 41309521 -155885911 - B3 SINE B2 -4 212 2 4 900 737 348 40 29 chr1 41309980 41310252 -155885180 - MTEa LTR MaLR -11 368 94 4 900 440 297 74 30 chr1 41310304 41310527 -155884905 - MLT1B LTR MaLR -227 240 5 4 900 718 323 38 17 chr1 41310539 41310775 -155884657 + Tigger5 DNA MER2_type 4 244 -2162 4 900 450 291 9 0 chr1 41310772 41310882 -155884550 + Tigger5 DNA MER2_type 2295 2405 -1 4 900 432 179 9 8 chr1 41310941 41311042 -155884390 - ORR1B1 LTR MaLR 0 421 269 4 900 423 0 0 0 chr1 41311188 41311235 -155884197 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 900 871 263 5 28 chr1 41311293 41311504 -155883928 + B3 SINE B2 1 206 -10 4 900 252 0 0 0 chr1 41311588 41311616 -155883816 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 900 332 283 117 34 chr1 41312694 41313090 -155882342 + L1MCc LINE L1 1321 1830 -5298 4 900 1070 328 31 50 chr1 41313415 41313797 -155881635 + MER21B LTR ERV1 3 377 -486 4 900 247 314 57 21 chr1 41313889 41314029 -155881403 + MER21B LTR ERV1 589 733 -130 4 900 384 119 0 0 chr1 41314335 41314394 -155881038 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 900 342 346 63 5 chr1 41314403 41314609 -155880823 + L1M4 LINE L1 598 815 -5727 4 900 272 210 108 24 chr1 41315003 41315086 -155880346 - MTE2a LTR MaLR 0 379 290 4 900 290 195 12 0 chr1 41315175 41315257 -155880175 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 900 811 214 5 5 chr1 41315275 41315713 -155879719 + (TG)n Simple_repeat Simple_repeat 1 438 0 4 900 249 337 10 29 chr1 41315846 41315950 -155879482 - MLT1A1 LTR MaLR -279 129 28 4 900 374 347 90 69 chr1 41315976 41316555 -155878877 + L1M4 LINE L1 4324 4914 -1730 4 900 3949 118 35 2 chr1 41316591 41317210 -155878222 - Lx2A LINE L1 -1 7007 6368 4 900 249 143 105 18 chr1 41317210 41317267 -155878165 - MTEa LTR MaLR -17 362 301 4 900 656 294 0 0 chr1 41318284 41318427 -155877005 + RSINE1 SINE B4 4 146 -19 4 900 211 229 0 0 chr1 41318511 41318559 -155876873 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 4 900 1128 256 114 3 chr1 41318862 41319203 -155876229 - MTE2a LTR MaLR 0 379 1 4 900 1586 160 58 7 chr1 41319249 41319526 -155875906 + Lx4A LINE L1 6766 7056 -2 4 900 259 266 13 0 chr1 41319569 41319648 -155875784 + L1ME1 LINE L1 5855 5934 -245 4 900 186 276 51 17 chr1 41319705 41319764 -155875668 - L2c LINE L2 -31 3356 3296 4 900 317 290 53 40 chr1 41319815 41320041 -155875391 + L1MD3 LINE L1 7640 7948 -47 4 900 747 97 0 0 chr1 41320850 41320964 -155874468 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 900 483 322 164 30 chr1 41321174 41321478 -155873954 + LTR41 LTR ERVL 65 409 -359 4 900 726 329 4 17 chr1 41321899 41322131 -155873301 - Tigger5 DNA MER2_type -2176 230 2 4 900 640 303 11 27 chr1 41322852 41323035 -155872397 + B3 SINE B2 1 180 -36 4 900 360 0 0 0 chr1 41323049 41323089 -155872343 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 4 900 405 0 0 0 chr1 41324978 41325023 -155870409 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 900 200 86 0 28 chr1 41325362 41325398 -155870034 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 900 414 0 0 0 chr1 41327102 41327148 -155868284 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 900 407 225 0 18 chr1 41328287 41328400 -155867032 + GA-rich Low_complexity Low_complexity 2 112 0 4 900 295 275 9 31 chr1 41330940 41331059 -155864373 - ID4_ SINE ID -17 135 22 4 900 289 270 0 31 chr1 41330996 41331061 -155864371 - ID SINE ID -141 83 21 4 900 346 172 40 197 chr1 41331464 41331616 -155863816 - MER106A DNA MER1_type -108 128 1 4 900 549 80 0 0 chr1 41332931 41333006 -155862426 + (A)n Simple_repeat Simple_repeat 1 75 0 4 900 234 191 0 0 chr1 41333099 41333146 -155862286 + T-rich Low_complexity Low_complexity 1 47 0 4 900 294 125 0 0 chr1 41334956 41335004 -155860428 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 900 342 0 0 0 chr1 41335719 41335757 -155859675 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 900 960 126 0 0 chr1 41335757 41335979 -155859453 + (CA)n Simple_repeat Simple_repeat 1 222 0 4 900 272 345 43 0 chr1 41336217 41336356 -155859076 + RSINE1 SINE B4 5 149 -16 4 900 279 0 0 0 chr1 41336570 41336601 -155858831 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 900 2426 148 48 55 chr1 41336779 41337564 -155857868 + RMER6C LTR ERVK 1 744 -12 4 900 27 29 0 0 chr1 41339238 41339272 -155856160 + AT_rich Low_complexity Low_complexity 1 34 0 4 900 285 29 0 0 chr1 41339902 41339936 -155855496 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 900 199 191 32 53 chr1 41340483 41340577 -155854855 + CT-rich Low_complexity Low_complexity 6 97 0 4 900 714 105 0 0 chr1 41340571 41340676 -155854756 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 4 900 409 309 148 5 chr1 41342855 41343044 -155852388 + ID_B1 SINE B4 1 216 -8 4 900 324 148 0 0 chr1 41343045 41343106 -155852326 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 4 900 34 24 0 0 chr1 41343147 41343188 -155852244 + AT_rich Low_complexity Low_complexity 1 41 0 4 900 500 30 15 0 chr1 41344340 41344406 -155851026 + (TTTTA)n Simple_repeat Simple_repeat 1 67 0 4 900 26 0 0 0 chr1 41344829 41344855 -155850577 + AT_rich Low_complexity Low_complexity 1 26 0 4 900 1009 264 53 36 chr1 41344868 41345126 -155850306 - MT2B LTR ERVL 0 601 339 4 900 279 0 0 0 chr1 41345126 41345157 -155850275 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 900 1009 201 152 167 chr1 41345157 41345332 -155850100 - MT2B LTR ERVL -263 338 39 4 900 326 61 20 0 chr1 41345350 41345399 -155850033 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 900 1754 158 16 13 chr1 41345399 41345713 -155849719 - Lx4A LINE L1 -19 7039 6725 4 900 315 125 0 0 chr1 41345710 41345758 -155849674 - Lx4A LINE L1 -286 6772 6725 4 900 303 146 0 0 chr1 41345755 41345803 -155849629 - Lx4A LINE L1 -286 6772 6725 4 900 291 146 0 0 chr1 41345800 41345848 -155849584 - Lx4A LINE L1 -286 6772 6725 4 900 281 136 0 0 chr1 41345845 41345889 -155849543 - Lx4B LINE L1 -286 6772 6729 4 900 3163 130 71 9 chr1 41345890 41346456 -155848976 - Lx4A LINE L1 -286 6772 6172 4 900 1124 228 174 116 chr1 41346476 41346908 -155848524 - MT2A LTR ERVL -64 469 13 4 900 400 281 141 0 chr1 41347743 41347864 -155847568 - B3A SINE B2 -60 138 1 4 900 269 263 13 0 chr1 41348203 41348279 -155847153 + CT-rich Low_complexity Low_complexity 2 78 0 4 900 552 329 100 18 chr1 41348283 41348512 -155846920 - B4A SINE B4 -43 249 2 4 900 306 275 31 71 chr1 41348550 41348566 -155846866 + RLTR16 LTR ERVK 404 415 -90 4 900 369 0 0 0 chr1 41348566 41348607 -155846825 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 900 415 235 12 0 chr1 41348607 41348688 -155846744 + RLTR20D LTR ERVK 479 560 -8 4 900 2156 126 3 0 chr1 41348818 41349136 -155846296 + ORR1A2 LTR MaLR 1 319 -8 4 900 200 149 21 0 chr1 41350045 41350092 -155845340 + T-rich Low_complexity Low_complexity 2 49 0 4 900 26 64 0 0 chr1 41350231 41350278 -155845154 + AT_rich Low_complexity Low_complexity 1 47 0 4 900 358 158 59 15 chr1 41350531 41350666 -155844766 + (TA)n Simple_repeat Simple_repeat 1 141 0 4 900 241 298 130 14 chr1 41350851 41351059 -155844373 - L1MCa LINE L1 -1345 5219 4988 4 900 1267 262 51 23 chr1 41351261 41351652 -155843780 - Lx6 LINE L1 -26 7434 7033 4 900 2281 217 31 2 chr1 41351660 41352172 -155843260 + L1_Mur2 LINE L1 5276 5802 -75 4 900 438 296 47 54 chr1 41352167 41352553 -155842879 - L1MCa LINE L1 -3029 3535 3153 4 900 298 224 15 0 chr1 41352929 41352996 -155842436 + CT-rich Low_complexity Low_complexity 4 71 0 4 900 1049 97 11 11 chr1 41352997 41353063 -155842369 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 4 900 994 125 0 11 chr1 41353063 41353241 -155842191 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 4 900 1049 97 11 11 chr1 41353241 41353352 -155842080 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 4 900 367 258 105 52 chr1 41353599 41353885 -155841547 - L1MCa LINE L1 -4131 2620 2320 4 900 359 331 68 38 chr1 41353911 41354250 -155841182 - L1MCa LINE L1 -4849 1196 848 4 900 1393 188 166 9 chr1 41354289 41354627 -155840805 - ORR1B1 LTR MaLR -3 391 1 4 900 479 328 73 30 chr1 41354792 41355161 -155840271 + MER57D LTR ERV1 20 406 -5 4 900 225 0 0 0 chr1 41355196 41355221 -155840211 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 900 192 152 0 0 chr1 41355221 41355254 -155840178 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 900 257 318 142 26 chr1 41357129 41357284 -155838148 - MIR SINE MIR -67 195 23 4 900 225 0 0 0 chr1 41357553 41357578 -155837854 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 900 441 0 0 0 chr1 41357605 41357654 -155837778 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 900 252 0 0 0 chr1 41357654 41357681 -155837751 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 900 257 301 0 88 chr1 41357838 41357929 -155837503 + RSINE1 SINE B4 67 149 -16 4 900 218 189 0 0 chr1 41357994 41358031 -155837401 + (CAT)n Simple_repeat Simple_repeat 3 39 0 4 900 423 0 0 0 chr1 41359492 41359539 -155835893 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 900 288 0 0 0 chr1 41359539 41359570 -155835862 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 900 26 30 0 0 chr1 41361347 41361380 -155834052 + AT_rich Low_complexity Low_complexity 1 33 0 4 900 231 114 0 0 chr1 41362397 41362432 -155833000 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 4 900 258 207 0 0 chr1 41362448 41362506 -155832926 + GA-rich Low_complexity Low_complexity 2 59 0 5 900 1890 152 9 30 chr1 41362651 41362984 -155832448 + ORR1A3 LTR MaLR 1 326 0 5 900 311 315 92 31 chr1 41363071 41363789 -155831643 - L1MCb LINE L1 -2260 4304 3543 5 900 23 0 0 0 chr1 41363894 41363917 -155831515 + AT_rich Low_complexity Low_complexity 1 23 0 5 900 682 298 81 11 chr1 41363989 41364424 -155831008 - L1MCb LINE L1 -3286 3278 2814 5 900 343 322 93 0 chr1 41364750 41364868 -155830564 + MTEa LTR MaLR 5 133 -246 5 900 413 299 51 29 chr1 41365519 41365657 -155829775 + RMER15 LTR ERVL 275 415 -160 5 900 1615 223 17 0 chr1 41365657 41366007 -155829425 - Lx6 LINE L1 -585 6875 6520 5 900 405 248 78 39 chr1 41366106 41366312 -155829120 + ERVL-int LTR ERVL 5417 5630 -127 5 900 464 320 43 49 chr1 41366415 41366579 -155828853 + MTEa LTR MaLR 45 207 -172 5 900 7202 73 28 2 chr1 41367171 41368773 -155826659 + L1_Mus1 LINE L1 4920 6566 -1 5 900 315 340 133 36 chr1 41368984 41369344 -155826088 - L1MCb LINE L1 -5555 490 96 5 900 741 326 11 5 chr1 41369381 41369569 -155825863 - B3A SINE B2 -9 189 1 5 900 737 291 61 6 chr1 41369746 41370088 -155825344 - L1MA4 LINE L1 -371 5929 5569 5 900 224 211 0 0 chr1 41370178 41370230 -155825202 + T-rich Low_complexity Low_complexity 2 53 0 5 900 1211 89 6 0 chr1 41370234 41370413 -155825019 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 900 286 338 0 0 chr1 41370420 41370500 -155824932 - PB1D7 SINE Alu 0 120 41 5 900 540 277 55 22 chr1 41370531 41370881 -155824551 - L1MA4 LINE L1 -734 5430 5053 5 900 641 122 9 0 chr1 41371392 41371507 -155823925 + (TG)n Simple_repeat Simple_repeat 1 116 0 5 900 450 0 0 0 chr1 41371507 41371556 -155823876 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 900 264 30 0 0 chr1 41374124 41374157 -155821275 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 900 5333 119 26 4 chr1 41374530 41375346 -155820086 - L1_Mus4 LINE L1 -3 6633 5800 5 900 33471 68 2 6 chr1 41375349 41376575 -155818857 - L1Md_F2 LINE L1 -12 6570 5354 5 900 2990 32 174 7 chr1 41376575 41376982 -155818450 - IAPLTR2_Mm LTR ERVK 0 475 1 5 900 33471 73 16 8 chr1 41376982 41381722 -155813710 - L1Md_F2 LINE L1 -530 5353 566 5 900 1866 150 0 0 chr1 41381715 41382021 -155813411 - L1_Mm LINE L1 -71 5812 5507 5 900 1737 299 108 21 chr1 41382051 41384682 -155810750 + Lx8 LINE L1 3075 6026 -1618 5 900 250 244 6 6 chr1 41384721 41384878 -155810554 + GA-rich Low_complexity Low_complexity 2 158 0 5 900 284 353 120 12 chr1 41384883 41385141 -155810291 + Lx8 LINE L1 6426 6711 -762 5 900 517 103 0 3 chr1 41385142 41385230 -155810202 + L1_Mus1 LINE L1 6487 6572 -10 5 900 528 59 0 0 chr1 41385240 41385308 -155810124 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 900 1328 309 62 31 chr1 41385373 41386050 -155809382 + Lx8 LINE L1 6774 7471 -2 5 900 2491 20 3 0 chr1 41386869 41387161 -155808271 - L1Md_A LINE L1 -1 6581 6289 5 900 1611 16 5 0 chr1 41387173 41387367 -155808065 - L1Md_A LINE L1 0 6582 6388 5 900 3274 16 0 0 chr1 41387367 41387751 -155807681 + L1Md_T LINE L1 5997 6380 -202 5 900 10464 10 1 0 chr1 41387748 41389401 -155806031 - L1Md_A LINE L1 -278 6304 4651 5 900 2245 73 6 60 chr1 41389422 41389756 -155805676 - L1_Mus2 LINE L1 0 6566 6251 5 900 461 338 237 35 chr1 41390278 41390848 -155804584 - L1MCa LINE L1 -5022 1486 803 5 900 238 355 64 39 chr1 41391466 41391777 -155803655 - Lx8 LINE L1 -29 7444 7126 5 900 456 247 19 0 chr1 41391789 41391943 -155803489 + T-rich Low_complexity Low_complexity 4 160 0 5 900 907 110 26 0 chr1 41391905 41392059 -155803373 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 5 900 611 112 10 0 chr1 41393307 41393405 -155802027 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 5 900 616 248 8 0 chr1 41393406 41393531 -155801901 + B3A SINE B2 2 127 -71 5 900 459 87 0 0 chr1 41393565 41393634 -155801798 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 900 21 0 0 0 chr1 41393639 41393660 -155801772 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 292 92 15 30 chr1 41396838 41396905 -155798527 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 5 900 2311 81 9 33 chr1 41397282 41397613 -155797819 + ORR1A2 LTR MaLR 5 327 0 5 900 786 286 40 143 chr1 41397911 41398331 -155797101 + MTE2b LTR MaLR 3 379 0 5 900 527 314 97 32 chr1 41398359 41398760 -155796672 - MLT1F1 LTR MaLR -3 566 128 5 900 235 250 94 0 chr1 41398823 41398887 -155796545 - PB1D10 SINE Alu -37 80 11 5 900 370 318 61 72 chr1 41399024 41399321 -155796111 + L1MA4 LINE L1 5662 5955 -357 5 900 231 114 0 0 chr1 41399504 41399539 -155795893 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 5 900 372 277 81 109 chr1 41399871 41400045 -155795387 - B3A SINE B2 -13 203 35 5 900 334 259 25 67 chr1 41400227 41400347 -155795085 + B1F1 SINE Alu 1 115 -34 5 900 270 309 49 0 chr1 41400376 41400499 -155794933 - MLT1F1-int LTR MaLR -676 813 685 5 900 326 279 42 7 chr1 41400749 41400870 -155794562 - B1F SINE Alu -7 113 1 5 900 276 333 123 0 chr1 41400870 41400887 -155794545 - B4A SINE B4 -72 220 66 5 900 225 94 0 0 chr1 41400932 41400964 -155794468 + (T)n Simple_repeat Simple_repeat 1 32 0 5 900 681 190 11 11 chr1 41401245 41401531 -155793901 + (TATG)n Simple_repeat Simple_repeat 1 286 0 5 900 501 168 47 18 chr1 41401572 41401742 -155793690 + (TATG)n Simple_repeat Simple_repeat 2 176 0 5 900 297 0 0 0 chr1 41401800 41401833 -155793599 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 900 183 42 0 0 chr1 41402752 41402776 -155792656 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 900 231 241 57 11 chr1 41402895 41402983 -155792449 - HAL1b LINE L1 -839 1170 1079 5 900 382 322 52 0 chr1 41403522 41403637 -155791795 - PB1 SINE Alu 0 127 7 5 900 369 62 0 0 chr1 41404083 41404131 -155791301 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 900 214 299 27 65 chr1 41404760 41404946 -155790486 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 5 900 240 282 8 46 chr1 41405168 41405298 -155790134 - L1M5 LINE L1 -1811 4335 4211 5 900 271 393 22 0 chr1 41405477 41405612 -155789820 - B4A SINE B4 -154 138 1 5 900 204 222 0 0 chr1 41407506 41407551 -155787881 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 900 1586 92 18 9 chr1 41408804 41409033 -155786399 + L1Md_F2 LINE L1 6339 6569 -13 5 900 21 0 0 0 chr1 41409084 41409105 -155786327 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 1591 291 100 14 chr1 41409238 41409877 -155785555 - Lx7 LINE L1 -330 7366 6673 5 900 533 288 5 49 chr1 41411963 41412186 -155783246 + RLTR12A LTR ERVK 237 449 -119 5 900 422 212 35 0 chr1 41412205 41412290 -155783142 + RLTR23 LTR ERV1 6 93 -337 5 900 502 265 36 51 chr1 41412315 41412510 -155782922 + RLTR23 LTR ERV1 239 430 0 5 900 710 154 16 0 chr1 41412510 41412633 -155782799 + RLTR12A LTR ERVK 444 568 0 5 900 500 0 17 0 chr1 41412770 41412830 -155782602 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 900 860 154 6 0 chr1 41412831 41412987 -155782445 + GA-rich Low_complexity Low_complexity 2 158 0 5 900 516 323 106 35 chr1 41413240 41413580 -155781852 - MLT1A0 LTR MaLR -1 364 1 5 900 293 286 45 45 chr1 41414119 41414229 -155781203 + PB1D10 SINE Alu 6 115 -2 5 900 701 276 19 5 chr1 41414498 41414709 -155780723 + B3 SINE B2 3 216 0 5 900 459 0 0 0 chr1 41415024 41415075 -155780357 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 900 351 352 8 30 chr1 41415088 41415220 -155780212 + ID_B1 SINE B4 93 221 -3 5 900 396 0 0 0 chr1 41416731 41416775 -155778657 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 900 680 57 0 0 chr1 41417570 41417658 -155777774 - L1_Mus4 LINE L1 -171 6465 6378 5 900 894 68 0 8 chr1 41417658 41417791 -155777641 + L1_Mus4 LINE L1 6500 6631 -5 5 112 701 329 35 57 chr1 41418568 41418935 -155776497 - MLT1A0 LTR MaLR -6 359 1 5 901 234 62 0 0 chr1 41419218 41419250 -155776182 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 901 252 245 28 0 chr1 41419245 41419351 -155776081 + (TA)n Simple_repeat Simple_repeat 2 110 0 5 901 327 316 103 26 chr1 41419416 41419832 -155775600 - L1M3 LINE L1 -561 5730 5283 5 901 280 268 21 28 chr1 41420057 41420199 -155775233 + A-rich Low_complexity Low_complexity 4 144 0 5 901 3136 44 0 15 chr1 41420249 41420642 -155774790 - L1_Mus1 LINE L1 0 6567 6181 5 901 238 308 13 0 chr1 41420643 41420721 -155774711 - Lx7 LINE L1 -387 7309 7231 5 901 590 151 0 0 chr1 41420746 41420851 -155774581 + B2_Mm2 SINE B2 4 108 -108 5 901 468 0 0 0 chr1 41420851 41420903 -155774529 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 901 24 91 0 0 chr1 41420903 41420969 -155774463 + AT_rich Low_complexity Low_complexity 1 66 0 5 901 692 267 8 23 chr1 41421133 41421390 -155774042 - L1M3 LINE L1 -2283 3857 3605 5 901 580 304 98 38 chr1 41421512 41421932 -155773500 - L1M3 LINE L1 -2538 3605 3161 5 901 1275 62 0 10 chr1 41421932 41422240 -155773192 + (TCC)n Simple_repeat Simple_repeat 1 304 0 5 901 590 178 0 8 chr1 41422241 41422257 -155773175 + polypyrimidine Low_complexity Low_complexity 115 130 0 5 901 1182 78 0 0 chr1 41422257 41422437 -155772995 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 901 590 178 0 8 chr1 41422437 41422550 -155772882 + CT-rich Low_complexity Low_complexity 2 114 0 5 901 9082 93 15 42 chr1 41423257 41424343 -155771089 - Lx3_Mus LINE L1 0 7009 5921 5 901 456 19 0 0 chr1 41424343 41424396 -155771036 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 5 901 12251 78 5 32 chr1 41424396 41426352 -155769080 - Lx3_Mus LINE L1 -1089 5920 4061 5 901 4456 91 10 7 chr1 41426352 41427053 -155768379 + L1_Mur1 LINE L1 3186 3888 -1998 5 901 2051 78 3 56 chr1 41427071 41427395 -155768037 - IAPLTR2b LTR ERVK -20 307 1 5 901 1547 62 0 0 chr1 41427398 41427607 -155767825 + L1_Mur1 LINE L1 3887 4095 -1791 5 901 533 323 142 13 chr1 41427614 41427846 -155767586 + ORR1E LTR MaLR 93 354 -5 5 901 249 345 54 9 chr1 41428139 41428250 -155767182 - PB1D10 SINE Alu -1 116 1 5 901 278 265 16 57 chr1 41428412 41428536 -155766896 + CT-rich Low_complexity Low_complexity 3 121 0 5 901 296 133 17 0 chr1 41429097 41429157 -155766275 + (TATG)n Simple_repeat Simple_repeat 2 62 0 5 901 22 56 0 0 chr1 41429890 41429926 -155765506 + AT_rich Low_complexity Low_complexity 1 36 0 5 901 676 244 21 83 chr1 41430420 41430612 -155764820 - B3 SINE B2 -15 180 1 5 901 259 62 42 0 chr1 41431402 41431416 -155764016 + (TG)n Simple_repeat Simple_repeat 2 16 0 5 901 243 0 0 0 chr1 41431416 41431443 -155763989 + (TGG)n Simple_repeat Simple_repeat 3 29 0 5 901 259 62 42 0 chr1 41431443 41431476 -155763956 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 901 633 288 145 18 chr1 41432219 41432560 -155762872 + MLT2C1 LTR ERVL 2 387 -77 6 901 429 289 178 43 chr1 41432682 41432935 -155762497 + ORR1E LTR MaLR 62 348 -11 6 901 316 206 50 40 chr1 41433023 41433124 -155762308 + ERVL-B4-int LTR ERVL 1 102 -5612 6 901 317 309 27 75 chr1 41433739 41433886 -155761546 - L1MEc LINE L1 -5991 409 270 6 901 180 373 0 0 chr1 41433903 41433970 -155761462 + L2 LINE L2 551 617 -2802 6 901 1021 175 20 99 chr1 41434137 41434429 -155761003 - Lx4B LINE L1 -4 7054 6786 6 901 234 268 12 12 chr1 41435225 41435346 -155760086 + (TATG)n Simple_repeat Simple_repeat 1 121 0 6 901 411 363 28 18 chr1 41435512 41435798 -155759634 + B4A SINE B4 2 290 -2 6 901 333 0 0 0 chr1 41435818 41435855 -155759577 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 901 448 309 60 60 chr1 41436669 41436869 -155758563 - Tigger5 DNA MER2_type -2196 210 11 6 901 243 326 44 73 chr1 41437780 41437841 -155757591 - ORR1C2 LTR MaLR -165 219 166 6 901 333 0 0 0 chr1 41437841 41437878 -155757554 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 901 990 107 0 0 chr1 41437878 41438054 -155757378 + (GA)n Simple_repeat Simple_repeat 2 178 0 6 901 243 326 44 73 chr1 41438054 41438196 -155757236 - ORR1C2 LTR MaLR -219 165 22 6 901 252 59 59 0 chr1 41439348 41439399 -155756033 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 6 901 951 91 21 14 chr1 41439407 41439552 -155755880 - B1_Mm SINE Alu 0 147 2 6 901 21 36 0 0 chr1 41439773 41439801 -155755631 + AT_rich Low_complexity Low_complexity 1 28 0 6 901 335 382 23 6 chr1 41440409 41440580 -155754852 - MER47B DNA MER2_type -174 244 71 6 901 244 280 0 26 chr1 41441477 41441554 -155753878 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 901 880 272 5 0 chr1 41442556 41442769 -155752663 + B3 SINE B2 2 215 -1 6 901 396 0 0 0 chr1 41442834 41442878 -155752554 + (TTG)n Simple_repeat Simple_repeat 1 44 0 6 901 483 322 45 33 chr1 41443072 41443244 -155752188 + MLT1A0 LTR MaLR 99 271 -103 6 901 468 0 0 0 chr1 41443571 41443623 -155751809 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 901 2311 95 3 58 chr1 41444843 41445189 -155750243 - ORR1A2 LTR MaLR 0 327 1 6 901 220 157 39 0 chr1 41445318 41445369 -155750063 + CT-rich Low_complexity Low_complexity 2 54 0 6 901 403 202 18 0 chr1 41446216 41446325 -155749107 + CT-rich Low_complexity Low_complexity 2 112 0 6 901 189 147 0 0 chr1 41448265 41448299 -155747133 + (TTC)n Simple_repeat Simple_repeat 3 36 0 6 901 356 174 43 0 chr1 41448296 41448434 -155746998 + (TCTCTG)n Simple_repeat Simple_repeat 1 144 0 6 901 444 37 0 0 chr1 41448434 41448488 -155746944 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 6 901 2912 126 10 37 chr1 41448714 41449199 -155746233 + MT2C_Mm LTR ERVL 1 472 -3 6 901 229 200 44 0 chr1 41449229 41449274 -155746158 - MER45B DNA Tip100 -2 1038 992 6 901 203 188 0 20 chr1 41449301 41449350 -155746082 + GA-rich Low_complexity Low_complexity 1 48 0 6 901 203 178 67 0 chr1 41449368 41449413 -155746019 + GA-rich Low_complexity Low_complexity 6 53 0 6 901 390 111 49 29 chr1 41449434 41449536 -155745896 + GA-rich Low_complexity Low_complexity 4 107 0 6 901 1325 179 16 0 chr1 41449536 41449793 -155745639 + Lx LINE L1 6385 6645 -9 6 901 696 131 22 49 chr1 41449978 41450163 -155745269 + GA-rich Low_complexity Low_complexity 1 180 0 6 901 1021 141 167 0 chr1 41451576 41451768 -155743664 + URR1B DNA MER1_type 2 225 0 6 901 212 0 36 0 chr1 41451785 41451813 -155743619 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 901 200 69 67 33 chr1 41451932 41451992 -155743440 + (TTATA)n Simple_repeat Simple_repeat 4 65 0 6 901 1534 233 138 55 chr1 41452420 41452897 -155742535 + RLTR11A2 LTR ERVK 1 517 -10 6 901 261 318 9 53 chr1 41452993 41453106 -155742326 + MTEa LTR MaLR 256 363 -16 6 901 1982 360 93 43 chr1 41453166 41454556 -155740876 + ORR1E-int LTR MaLR 48 1396 -184 6 901 362 360 61 65 chr1 41454561 41454925 -155740507 + ORR1E LTR MaLR 1 416 -3 6 901 221 146 0 20 chr1 41455166 41455215 -155740217 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 901 1434 7 0 17 chr1 41455223 41455522 -155739910 + (TCTA)n Simple_repeat Simple_repeat 1 293 0 6 901 368 383 19 0 chr1 41456366 41456528 -155738904 + MIR SINE MIR 80 244 -18 6 901 237 33 0 0 chr1 41457191 41457221 -155738211 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 901 1274 340 131 48 chr1 41457430 41458653 -155736779 + MTE-int LTR MaLR 227 1551 -29 6 901 270 354 10 0 chr1 41458862 41458958 -155736474 + MTEa LTR MaLR 268 364 -15 6 901 1529 192 96 138 chr1 41460929 41461019 -155734413 - RLTR20B2 LTR ERVK 0 560 465 6 901 567 81 0 0 chr1 41461019 41461105 -155734327 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 901 1529 192 96 138 chr1 41461105 41461587 -155733845 - RLTR20B2 LTR ERVK -96 464 12 6 901 376 309 18 9 chr1 41462503 41462614 -155732818 - ID_B1 SINE B4 -2 222 111 6 901 616 305 28 20 chr1 41462961 41463212 -155732220 + MLT1B LTR MaLR 76 328 -62 6 901 672 326 0 20 chr1 41463293 41463490 -155731942 + B3 SINE B2 22 214 -2 6 901 471 109 43 0 chr1 41463512 41463604 -155731828 + GA-rich Low_complexity Low_complexity 4 99 0 6 901 387 0 0 0 chr1 41463696 41463739 -155731693 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 901 201 273 0 0 chr1 41464584 41464639 -155730793 + A-rich Low_complexity Low_complexity 1 55 0 6 901 579 284 18 91 chr1 41466002 41466223 -155729209 + B3A SINE B2 6 210 -6 6 901 384 341 106 21 chr1 41466271 41466792 -155728640 - L1MB7 LINE L1 -38 6146 5582 6 901 207 133 0 0 chr1 41467382 41467427 -155728005 + (A)n Simple_repeat Simple_repeat 1 45 0 6 901 25 0 0 0 chr1 41467674 41467699 -155727733 + AT_rich Low_complexity Low_complexity 1 25 0 6 901 425 346 0 16 chr1 41470175 41470357 -155725075 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 6 901 362 308 8 8 chr1 41470597 41470715 -155724717 + Lx8 LINE L1 7158 7275 -198 6 901 230 224 0 0 chr1 41471522 41471571 -155723861 + CT-rich Low_complexity Low_complexity 2 50 0 6 901 825 202 3 3 chr1 41471572 41471897 -155723535 + (CA)n Simple_repeat Simple_repeat 1 325 0 6 901 316 311 0 0 chr1 41471914 41472020 -155723412 - Lx8 LINE L1 -1728 5745 5640 6 901 4724 70 33 5 chr1 41472475 41473116 -155722316 + L1Md_F2 LINE L1 5924 6582 0 6 901 225 297 28 4 chr1 41474471 41474567 -155720865 + MIR SINE MIR 79 179 -89 6 901 33 0 0 0 chr1 41475062 41475095 -155720337 + AT_rich Low_complexity Low_complexity 1 33 0 6 901 189 0 0 0 chr1 41475965 41475986 -155719446 + (A)n Simple_repeat Simple_repeat 1 21 0 6 901 371 315 82 27 chr1 41476540 41476723 -155718709 - B3A SINE B2 -5 193 1 6 901 3925 133 34 20 chr1 41477552 41478198 -155717234 + ORR1A2-int LTR MaLR 1308 1962 -1 6 901 944 137 65 0 chr1 41478198 41478351 -155717081 + ORR1A2 LTR MaLR 1 163 -164 6 901 269 328 94 29 chr1 41478976 41479114 -155716318 + L3 LINE CR1 4332 4478 -11 6 901 183 267 33 0 chr1 41479384 41479444 -155715988 + L2 LINE L2 2341 2402 -1017 6 901 237 256 43 94 chr1 41480395 41480533 -155714899 - L1MC4a LINE L1 -1923 5959 5829 6 901 220 161 0 51 chr1 41483844 41483903 -155711529 + CT-rich Low_complexity Low_complexity 6 61 0 6 901 321 172 0 0 chr1 41484242 41484306 -155711126 + CT-rich Low_complexity Low_complexity 3 66 0 6 901 309 109 0 0 chr1 41484429 41484475 -155710957 + (T)n Simple_repeat Simple_repeat 1 46 0 6 901 25 31 0 0 chr1 41485795 41485827 -155709605 + AT_rich Low_complexity Low_complexity 1 32 0 6 901 245 0 65 22 chr1 41486619 41486665 -155708767 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 6 901 459 0 0 0 chr1 41487388 41487439 -155707993 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 901 412 103 22 22 chr1 41487440 41487529 -155707903 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 6 901 297 176 0 0 chr1 41487591 41487665 -155707767 + GA-rich Low_complexity Low_complexity 1 74 0 6 901 387 92 0 0 chr1 41487734 41487799 -155707633 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 901 279 0 0 0 chr1 41487799 41487829 -155707603 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 901 378 0 0 0 chr1 41488845 41488887 -155706545 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 901 366 23 0 0 chr1 41488887 41488929 -155706503 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 901 357 109 0 0 chr1 41488994 41489049 -155706383 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 901 225 315 117 21 chr1 41490514 41490608 -155704824 - B4 SINE B4 -93 199 97 6 901 450 187 193 7 chr1 41490677 41490817 -155704615 + Lx7 LINE L1 7531 7696 0 6 901 276 261 0 0 chr1 41491523 41491615 -155703817 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 901 281 232 11 0 chr1 41491697 41491792 -155703640 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 901 366 302 86 7 chr1 41491800 41491940 -155703492 + B4A SINE B4 126 276 -16 6 901 372 22 0 0 chr1 41492025 41492070 -155703362 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 901 207 0 0 0 chr1 41492070 41492092 -155703340 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 901 575 297 13 13 chr1 41492714 41492886 -155702546 + B3A SINE B2 3 163 -53 6 901 321 26 0 0 chr1 41492886 41492924 -155702508 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 901 417 66 0 0 chr1 41493050 41493111 -155702321 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 901 772 244 13 13 chr1 41493117 41493271 -155702161 - B3 SINE B2 -61 155 2 6 901 2843 91 33 12 chr1 41493352 41493751 -155701681 - MTB_Mm LTR MaLR 0 407 1 6 901 225 0 0 0 chr1 41493837 41493862 -155701570 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 901 261 139 0 0 chr1 41495287 41495330 -155700102 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 901 234 0 0 0 chr1 41495330 41495356 -155700076 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 901 7216 72 4 4 chr1 41497101 41498255 -155697177 + L1_Mus2 LINE L1 5391 6552 -14 7 901 222 37 0 0 chr1 41498261 41498288 -155697144 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 901 375 328 39 16 chr1 41498467 41498594 -155696838 + LTR16C LTR ERVL 353 482 -7 7 901 593 245 67 160 chr1 41500037 41500057 -155695375 - B3 SINE B2 0 216 196 1 901 1241 203 159 18 chr1 41500057 41500383 -155695049 - ORR1D1 LTR MaLR -2 372 1 2 901 593 245 67 160 chr1 41500383 41500600 -155694832 - B3 SINE B2 -21 195 1 1 901 465 54 14 0 chr1 41500627 41500701 -155694731 + L1Md_F3 LINE L1 6508 6582 -2 3 901 244 188 0 28 chr1 41500797 41500834 -155694598 + polypyrimidine Low_complexity Low_complexity 34 69 0 4 901 525 32 0 0 chr1 41500834 41500897 -155694535 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 901 244 188 0 28 chr1 41500897 41500930 -155694502 + polypyrimidine Low_complexity Low_complexity 1 33 0 6 901 603 226 87 7 chr1 41500930 41501068 -155694364 - B1_Mur3 SINE Alu 0 149 1 7 901 242 143 20 0 chr1 41501287 41501336 -155694096 + GA-rich Low_complexity Low_complexity 3 52 0 8 901 2164 110 31 3 chr1 41501369 41501687 -155693745 + ORR1A2 LTR MaLR 1 327 0 9 901 3038 82 10 15 chr1 41502270 41502679 -155692753 + MTB_Mm LTR MaLR 1 407 0 1 901 33 56 0 0 chr1 41502825 41502879 -155692553 + AT_rich Low_complexity Low_complexity 1 54 0 1 901 473 314 94 44 chr1 41504529 41504709 -155690723 - B3A SINE B2 -8 190 2 1 901 570 86 0 0 chr1 41505432 41505513 -155689919 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 901 260 229 168 35 chr1 41505533 41505646 -155689786 - B3A SINE B2 -57 141 14 1 901 518 294 186 65 chr1 41506852 41507315 -155688117 + RMER20B LTR ERVK 1 516 0 1 901 213 130 21 42 chr1 41507386 41507434 -155687998 + A-rich Low_complexity Low_complexity 2 48 0 1 901 351 222 11 226 chr1 41507625 41507718 -155687714 - PB1 SINE Alu -26 101 21 1 901 21 36 0 0 chr1 41508207 41508235 -155687197 + AT_rich Low_complexity Low_complexity 1 28 0 1 901 668 121 33 39 chr1 41508711 41508892 -155686540 + CT-rich Low_complexity Low_complexity 1 180 0 1 901 322 111 0 0 chr1 41508893 41508938 -155686494 - B1_Mus2 SINE Alu -10 137 93 2 901 1610 306 66 10 chr1 41509055 41509647 -155685785 - Lx8 LINE L1 -736 6737 6113 2 901 741 100 0 0 chr1 41509676 41509806 -155685626 + (TA)n Simple_repeat Simple_repeat 1 130 0 2 901 321 82 0 0 chr1 41509856 41509905 -155685527 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2 901 360 0 0 0 chr1 41509907 41509947 -155685485 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 901 1406 210 75 14 chr1 41509947 41510295 -155685137 + ORR1D1 LTR MaLR 6 374 0 2 901 285 268 73 93 chr1 41510295 41510455 -155684977 - B2_Mm2 SINE B2 -41 157 3 2 901 180 0 0 0 chr1 41510731 41510751 -155684681 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 2 901 406 108 24 0 chr1 41510775 41510858 -155684574 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 901 403 270 206 16 chr1 41511063 41511560 -155683872 - L1M4 LINE L1 -1607 4539 3944 2 901 5552 247 54 15 chr1 41511640 41511887 -155683545 - Lx6 LINE L1 0 7460 7183 3 901 315 0 0 0 chr1 41511887 41511922 -155683510 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 901 5552 247 54 15 chr1 41511922 41512978 -155682454 - Lx6 LINE L1 -278 7182 6107 3 901 4725 186 68 60 chr1 41513001 41514062 -155681370 + L1_Mur3 LINE L1 1808 2884 -2996 3 901 1095 102 11 6 chr1 41514062 41514240 -155681192 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 901 4725 186 68 60 chr1 41514240 41514437 -155680995 + L1_Mur3 LINE L1 2885 3075 -2805 3 901 628 300 190 12 chr1 41514540 41514793 -155680639 + MTD LTR MaLR 20 317 -102 3 901 278 26 26 0 chr1 41514843 41514882 -155680550 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 901 22 0 0 0 chr1 41514987 41515009 -155680423 + AT_rich Low_complexity Low_complexity 1 22 0 3 901 1620 230 58 37 chr1 41515026 41515436 -155679996 - MTD LTR MaLR 0 419 1 3 901 310 336 176 4 chr1 41515671 41515910 -155679522 + L1ME2z LINE L1 5567 5846 -316 3 901 284 279 102 14 chr1 41515986 41516180 -155679252 + L1ME2z LINE L1 5844 6066 -96 3 901 204 40 0 0 chr1 41516844 41516869 -155678563 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 901 913 239 0 25 chr1 41517564 41517766 -155677666 - B3A SINE B2 -1 197 1 4 901 334 281 28 46 chr1 41518235 41518343 -155677089 - RSINE1 SINE B4 -4 161 56 4 901 23 54 0 0 chr1 41518631 41518668 -155676764 + AT_rich Low_complexity Low_complexity 1 37 0 4 901 2703 34 0 3 chr1 41519658 41519981 -155675451 - RLTRETN_Mm LTR ERVK 0 322 1 4 901 13930 52 2 3 chr1 41520323 41522801 -155672631 - L1Md_F2 LINE L1 -1 6581 4105 4 901 3285 48 2 9 chr1 41522801 41523222 -155672210 + L1Md_F2 LINE L1 6165 6582 0 4 901 305 293 73 22 chr1 41523281 41523417 -155672015 + RSINE1 SINE B4 3 145 -20 4 901 548 269 8 0 chr1 41523566 41523685 -155671747 - ORR1D2 LTR MaLR -234 136 17 4 901 234 353 0 56 chr1 41524001 41524127 -155671305 - MIRc SINE MIR -113 155 37 4 901 785 308 14 9 chr1 41524210 41524420 -155671012 - B3 SINE B2 -4 212 2 4 901 36575 13 14 20 chr1 41524646 41529146 -155666286 + L1Md_A LINE L1 404 4927 -956 5 901 230 183 46 77 chr1 41529146 41529211 -155666221 - RMER20A LTR ERVK -268 248 186 5 901 36575 13 14 20 chr1 41529211 41529865 -155665567 + L1Md_A LINE L1 4928 5586 -297 5 901 8642 20 1 0 chr1 41529865 41530858 -155664574 + L1Md_A LINE L1 5587 6580 -2 5 901 4461 80 24 16 chr1 41531552 41532177 -155663255 + L1Md_F2 LINE L1 5941 6570 -12 5 901 337 342 71 56 chr1 41532263 41532672 -155662760 - L1ME1 LINE L1 -162 6017 5603 5 901 303 305 12 78 chr1 41532713 41532880 -155662552 - RLTR22_Mur LTR ERVK -387 1461 1306 5 901 268 352 0 18 chr1 41532880 41532990 -155662442 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 5 901 360 64 0 0 chr1 41532995 41533042 -155662390 + (TATG)n Simple_repeat Simple_repeat 1 47 0 5 901 480 310 34 28 chr1 41533099 41533278 -155662154 + MLT2B1 LTR ERVL 83 262 -258 5 901 515 275 34 41 chr1 41533368 41533634 -155661798 - L1MD LINE L1 -1231 4915 4652 5 901 427 338 81 70 chr1 41533672 41534229 -155661203 - L1MD LINE L1 -1504 4642 4080 5 901 300 289 56 0 chr1 41534579 41534669 -155660763 + B1F2 SINE Alu 26 120 -29 6 901 381 164 0 0 chr1 41534685 41534758 -155660674 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 901 2483 299 87 31 chr1 41535300 41536311 -155659121 + Lx8 LINE L1 6191 7270 -203 6 901 2442 95 6 0 chr1 41536311 41536636 -155658796 - ORR1A2 LTR MaLR 0 327 1 6 901 2483 299 87 31 chr1 41536636 41536839 -155658593 + Lx8 LINE L1 7271 7473 0 6 901 612 294 18 72 chr1 41537086 41537530 -155657902 - Lx7 LINE L1 -1622 6022 5590 6 901 2987 300 43 22 chr1 41537666 41538746 -155656686 + Lx8 LINE L1 6145 7246 -227 6 901 1697 207 88 0 chr1 41538746 41539108 -155656324 + ORR1B1 LTR MaLR 1 394 0 6 901 746 312 46 81 chr1 41539298 41539667 -155655765 - MTE2a LTR MaLR -17 402 50 6 901 4680 226 79 43 chr1 41540384 41541603 -155653829 + Lx7 LINE L1 6433 7694 -2 6 901 903 252 43 43 chr1 41542013 41542266 -155653166 + B4 SINE B4 40 292 0 6 901 279 0 0 0 chr1 41542641 41542672 -155652760 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 7 901 373 280 44 49 chr1 41542686 41542911 -155652521 - L1M4 LINE L1 -797 5349 5126 7 901 559 287 144 19 chr1 41543120 41543376 -155652056 - B4A SINE B4 0 292 5 7 901 423 309 39 47 chr1 41543438 41543552 -155651880 + CYRA11_Mm Unknown Y-chromosome 65 176 -441 7 901 869 177 18 0 chr1 41543552 41543716 -155651716 - URR1A DNA MER1_type -2 224 58 7 901 616 140 11 0 chr1 41543763 41543856 -155651576 + Lx4B LINE L1 6456 6549 -509 7 901 183 42 0 0 chr1 41543961 41543985 -155651447 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 7 901 516 228 118 0 chr1 41544660 41544787 -155650645 - B1_Mur2 SINE Alu -6 143 2 7 901 2983 229 61 38 chr1 41544792 41545469 -155649963 + Lx6 LINE L1 6765 7456 -4 7 901 511 126 10 10 chr1 41545513 41545609 -155649823 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 7 901 688 195 0 12 chr1 41545612 41545783 -155649649 + GA-rich Low_complexity Low_complexity 2 170 0 8 901 435 38 0 0 chr1 41545785 41545838 -155649594 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 8 901 4927 45 0 2 chr1 41548999 41549600 -155645832 - L1Md_F2 LINE L1 -13 6569 5970 8 901 401 88 0 0 chr1 41549600 41549657 -155645775 + L1_Mm LINE L1 3285 3341 -2542 8 112 2401 104 126 21 chr1 41549745 41550175 -155645257 - IAPLTR2_Mm LTR ERVK 0 475 1 8 902 2507 164 27 2 chr1 41550630 41551075 -155644357 + Lx4A LINE L1 6600 7055 -3 8 902 1865 302 117 12 chr1 41551255 41552059 -155643373 + Lx8 LINE L1 6338 7225 -248 8 902 560 290 0 15 chr1 41552503 41552636 -155642796 - ORR1D2 LTR MaLR -230 140 10 8 902 21 0 0 0 chr1 41552896 41552917 -155642515 + AT_rich Low_complexity Low_complexity 1 21 0 8 902 293 325 17 26 chr1 41552931 41553048 -155642384 - Lx9 LINE L1 -536 7108 6993 8 902 365 247 9 13 chr1 41553101 41553260 -155642172 - L1M2 LINE L1 -2948 3192 3038 9 902 1353 296 56 29 chr1 41553444 41554336 -155641096 - L1M2 LINE L1 -872 5271 4356 9 902 23 0 0 0 chr1 41554931 41554954 -155640478 + AT_rich Low_complexity Low_complexity 1 23 0 9 902 573 170 0 0 chr1 41554955 41555067 -155640365 + GA-rich Low_complexity Low_complexity 1 112 0 9 902 4230 242 149 28 chr1 41555067 41556731 -155638701 + Lx7 LINE L1 5826 7691 -5 9 902 1221 114 11 0 chr1 41557602 41557778 -155637654 + B2_Mm1t SINE B2 2 179 -14 9 902 327 100 353 29 chr1 41557844 41557946 -155637486 + B2_Mm2 SINE B2 47 181 -14 9 902 270 0 0 0 chr1 41557973 41558003 -155637429 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 902 4046 125 220 16 chr1 41559205 41560001 -155635431 - RMER17B LTR ERVK 0 958 1 9 902 330 26 0 0 chr1 41560464 41560503 -155634929 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 902 256 267 63 54 chr1 41560634 41560745 -155634687 - Looper DNA PiggyBac -16 1542 1431 1 902 296 315 76 21 chr1 41561295 41561532 -155633900 - Looper DNA PiggyBac -1237 321 72 1 902 324 23 0 0 chr1 41561890 41561933 -155633499 - L1_Mus4 LINE L1 -566 6070 6028 1 902 1552 86 79 3 chr1 41561933 41562219 -155633213 - RLTR10A LTR ERVK 0 309 60 1 902 330 239 0 0 chr1 41562221 41562313 -155633119 + CT-rich Low_complexity Low_complexity 1 92 0 1 902 306 0 0 0 chr1 41562532 41562566 -155632866 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 902 26 0 0 0 chr1 41562789 41562815 -155632617 + AT_rich Low_complexity Low_complexity 1 26 0 1 902 231 114 0 0 chr1 41563246 41563281 -155632151 + (A)n Simple_repeat Simple_repeat 1 35 0 1 902 692 43 0 11 chr1 41563850 41563943 -155631489 + (TTCTC)n Simple_repeat Simple_repeat 4 95 0 1 902 382 123 0 125 chr1 41563948 41564124 -155631308 + CT-rich Low_complexity Low_complexity 2 155 0 1 902 2482 125 13 0 chr1 41564124 41564507 -155630925 - Lx2 LINE L1 0 6997 6610 1 902 243 322 56 0 chr1 41565236 41565326 -155630106 + PB1D10 SINE Alu 14 108 -9 1 902 317 147 0 68 chr1 41565568 41565685 -155629747 + (TCTCTG)n Simple_repeat Simple_repeat 6 114 0 1 902 483 268 50 44 chr1 41565688 41565868 -155629564 - B3A SINE B2 -16 182 2 1 902 527 256 76 29 chr1 41566576 41566847 -155628585 - L1M4 LINE L1 -757 5389 5094 1 902 450 0 0 0 chr1 41566927 41566977 -155628455 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 1 902 312 27 0 0 chr1 41568975 41569012 -155626420 + (A)n Simple_repeat Simple_repeat 1 37 0 1 902 212 132 0 50 chr1 41569289 41569329 -155626103 + T-rich Low_complexity Low_complexity 1 38 0 1 902 399 207 6 18 chr1 41571643 41571810 -155623622 + CT-rich Low_complexity Low_complexity 2 166 0 1 902 894 229 70 102 chr1 41572215 41572604 -155622828 + MT2A LTR ERVL 1 464 -69 1 902 220 157 23 57 chr1 41572636 41572724 -155622708 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 902 616 297 54 33 chr1 41572792 41573126 -155622306 - RLTR15 LTR ERVK -18 341 1 1 902 2375 154 19 6 chr1 41573126 41573603 -155621829 - MYSERV6-int LTR ERVK -56 8903 8498 1 902 1458 210 32 143 chr1 41573606 41574045 -155621387 + Lx4B LINE L1 6170 6559 -499 1 902 1274 178 4 34 chr1 41574053 41574321 -155621111 - MYSERV6-int LTR ERVK -732 8227 7968 1 902 36030 65 7 5 chr1 41574321 41580487 -155614945 - L1Md_F3 LINE L1 -3 6581 406 1 902 795 174 20 30 chr1 41580489 41580691 -155614741 - MYSERV-int LTR ERVK -1037 5513 5314 1 902 598 285 30 18 chr1 41580692 41580860 -155614572 - RMER4A LTR ERVK -30 436 267 1 902 3586 255 74 52 chr1 41580860 41582182 -155613250 - MYSERV-int LTR ERVK -1405 5145 3795 1 902 242 268 60 84 chr1 41582690 41582857 -155612575 - RLTR15 LTR ERVK -149 210 48 1 902 336 64 0 0 chr1 41583299 41583346 -155612086 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 902 432 172 43 0 chr1 41583393 41583486 -155611946 - Lx4A LINE L1 -5 7053 6957 1 902 226 98 39 0 chr1 41583730 41583781 -155611651 + (TTTTTG)n Simple_repeat Simple_repeat 5 57 0 1 902 235 381 57 0 chr1 41583784 41583889 -155611543 - RMER12 LTR ERVK -117 1205 1095 1 902 2263 183 53 41 chr1 41584088 41584795 -155610637 - RLTR22_Mur LTR ERVK -889 919 218 1 902 714 339 35 24 chr1 41584828 41585082 -155610350 + ORR1E LTR MaLR 4 260 -99 1 902 930 319 28 40 chr1 41585096 41585378 -155610054 + Lx7 LINE L1 6366 6639 -1057 1 902 219 69 0 0 chr1 41585378 41585407 -155610025 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 902 930 319 28 40 chr1 41585407 41585552 -155609880 + Lx7 LINE L1 6640 6787 -909 1 902 870 298 95 19 chr1 41585556 41585915 -155609517 + Lx7 LINE L1 6921 7306 -390 1 902 180 97 0 0 chr1 41586131 41586162 -155609270 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 902 75 57 0 0 chr1 41586169 41586293 -155609139 + AT_rich Low_complexity Low_complexity 1 124 0 1 902 295 262 12 0 chr1 41586293 41586373 -155609059 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 902 1651 189 105 3 chr1 41586388 41586732 -155608700 - ORR1C2 LTR MaLR -1 383 5 1 902 1173 140 21 0 chr1 41586819 41587005 -155608427 + B2_Mm2 SINE B2 1 190 -5 1 902 2971 215 101 29 chr1 41587651 41588404 -155607028 - RLTR40 LTR ERVK -10 807 1 1 902 303 316 151 10 chr1 41590989 41591181 -155604251 + HAL1-3A_ME LINE L1 2272 2490 -368 1 902 378 0 0 0 chr1 41591212 41591254 -155604178 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 902 203 146 0 24 chr1 41591496 41591538 -155603894 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 902 455 199 149 20 chr1 41592042 41592237 -155603195 - Lx9 LINE L1 -6 7638 7419 1 902 398 189 0 0 chr1 41592252 41592347 -155603085 - Lx9 LINE L1 -127 7517 7423 1 902 498 251 73 21 chr1 41592662 41592853 -155602579 + L1ME2z LINE L1 5963 6163 -281 1 902 1069 300 46 3 chr1 41593080 41593384 -155602048 - MTD LTR MaLR -102 317 1 1 902 229 0 83 0 chr1 41593420 41593456 -155601976 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 902 1167 57 0 0 chr1 41593456 41593597 -155601835 + B1_Mus2 SINE Alu 2 142 -5 1 902 189 0 0 0 chr1 41593601 41593622 -155601810 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1 902 280 345 133 34 chr1 41593652 41593916 -155601516 + MLT1D LTR MaLR 99 388 -117 1 902 244 348 27 47 chr1 41594175 41594323 -155601109 - MIRb SINE MIR -2 266 122 1 902 395 79 0 0 chr1 41594537 41594600 -155600832 + L1_Mus3 LINE L1 6569 6631 -7 1 902 21 57 0 0 chr1 41595009 41595044 -155600388 + AT_rich Low_complexity Low_complexity 1 35 0 1 902 332 210 12 0 chr1 41596095 41596176 -155599256 + GA-rich Low_complexity Low_complexity 3 84 0 1 902 1083 312 95 3 chr1 41596299 41596636 -155598796 - MTEa LTR MaLR -4 375 8 1 902 1212 250 52 46 chr1 41596693 41597062 -155598370 + ORR1D1 LTR MaLR 4 374 0 1 902 303 28 0 0 chr1 41597096 41597132 -155598300 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 902 180 111 0 0 chr1 41597496 41597523 -155597909 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 902 605 237 32 53 chr1 41597709 41597896 -155597536 - Lx6 LINE L1 -175 7285 7103 1 902 331 239 71 77 chr1 41597892 41598060 -155597372 + L1MA8 LINE L1 5850 6016 -275 1 902 306 0 0 0 chr1 41599146 41599180 -155596252 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 902 391 335 73 53 chr1 41599241 41599487 -155595945 - LTR52 LTR ERVL -153 268 18 1 902 1683 307 30 129 chr1 41600937 41601336 -155594096 + Lx5 LINE L1 6117 6454 -596 1 902 441 0 0 0 chr1 41601336 41601385 -155594047 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 1 902 1683 307 30 129 chr1 41601385 41601980 -155593452 + Lx5 LINE L1 6455 7013 -37 1 902 245 363 17 30 chr1 41602330 41602631 -155592801 + L1_Mur1 LINE L1 1635 1931 -3955 1 902 1143 22 0 0 chr1 41602972 41603106 -155592326 + (GGGAGA)n Simple_repeat Simple_repeat 4 137 0 1 902 186 43 0 0 chr1 41603255 41603278 -155592154 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1 902 346 304 110 70 chr1 41603278 41604057 -155591375 + L1MA4 LINE L1 2203 2972 -3171 1 902 249 33 0 0 chr1 41604057 41604087 -155591345 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 902 258 32 0 0 chr1 41604093 41604124 -155591308 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 902 572 312 121 78 chr1 41604124 41605009 -155590423 + L1MA4 LINE L1 2979 3933 -1947 1 902 255 253 40 13 chr1 41605040 41605192 -155590240 + (TA)n Simple_repeat Simple_repeat 2 157 0 1 902 984 327 60 59 chr1 41605192 41606261 -155589171 + L1MA4 LINE L1 4003 5072 -1071 1 902 2337 107 0 0 chr1 41606272 41606599 -155588833 - ORR1A2 LTR MaLR 0 327 1 1 902 249 335 72 19 chr1 41606675 41606882 -155588550 + L1_Mur1 LINE L1 5220 5437 -449 1 902 595 318 16 79 chr1 41606891 41607102 -155588330 + L1MA4 LINE L1 5587 5792 -508 1 902 1445 84 5 0 chr1 41607102 41607304 -155588128 + L1_Mus2 LINE L1 6362 6564 -2 1 902 595 286 84 41 chr1 41607304 41607547 -155587885 + L1MA4 LINE L1 5786 6004 -296 1 902 298 355 56 0 chr1 41607684 41607791 -155587641 + B3A SINE B2 82 194 -4 1 902 21 57 0 0 chr1 41607836 41607871 -155587561 + AT_rich Low_complexity Low_complexity 1 35 0 1 902 461 335 16 16 chr1 41609028 41609210 -155586222 + B3A SINE B2 1 182 -16 1 902 27 0 0 0 chr1 41609594 41609621 -155585811 + AT_rich Low_complexity Low_complexity 1 27 0 1 902 325 324 82 14 chr1 41609824 41609871 -155585561 + Lx9 LINE L1 7307 7354 -290 1 902 1950 128 21 59 chr1 41609871 41610210 -155585222 - ORR1A3 LTR MaLR 0 326 1 1 902 325 324 82 14 chr1 41610210 41610453 -155584979 + Lx9 LINE L1 7355 7617 -27 1 902 31 44 0 0 chr1 41610508 41610553 -155584879 + AT_rich Low_complexity Low_complexity 1 45 0 1 902 2245 155 15 5 chr1 41611012 41611408 -155584024 + Lx2B LINE L1 6596 6995 -5 1 902 360 88 0 0 chr1 41613543 41613600 -155581832 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 902 786 255 82 10 chr1 41613706 41613900 -155581532 - B3 SINE B2 -8 208 1 1 902 28 0 0 0 chr1 41614809 41614837 -155580595 + AT_rich Low_complexity Low_complexity 1 28 0 1 902 347 263 13 26 chr1 41615170 41615326 -155580106 + (TA)n Simple_repeat Simple_repeat 2 155 0 1 902 22 35 0 0 chr1 41616597 41616626 -155578806 + AT_rich Low_complexity Low_complexity 1 29 0 1 902 195 129 0 0 chr1 41616628 41616659 -155578773 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 902 191 32 65 0 chr1 41616832 41616863 -155578569 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 1 902 522 0 0 0 chr1 41618544 41618602 -155576830 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 902 366 363 72 11 chr1 41619049 41619325 -155576107 + HAL1 LINE L1 1358 1650 -857 1 902 483 18 0 0 chr1 41619409 41619465 -155575967 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 902 231 204 0 0 chr1 41619860 41619909 -155575523 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 1 902 1793 251 59 41 chr1 41620064 41620671 -155574761 - Lx7 LINE L1 -1246 6450 5833 1 902 968 140 0 6 chr1 41620701 41620779 -155574653 + (GGA)n Simple_repeat Simple_repeat 2 78 0 1 902 3143 78 0 2 chr1 41620779 41621201 -155574231 - BGLII LTR ERVK 0 421 1 1 902 968 140 0 6 chr1 41621201 41621302 -155574130 + (GGA)n Simple_repeat Simple_repeat 1 101 0 1 902 4907 47 3 0 chr1 41621368 41621964 -155573468 - L1_Mus1 LINE L1 0 6567 5970 1 902 995 53 0 0 chr1 41621964 41622095 -155573337 + L1_Mus1 LINE L1 5829 5959 -608 1 902 559 216 0 159 chr1 41622102 41622328 -155573104 - Lx7 LINE L1 -53 5827 5638 1 902 712 130 0 0 chr1 41622326 41622434 -155572998 - L1_Mus3 LINE L1 -132 6506 6399 1 902 781 189 0 0 chr1 41622427 41622570 -155572862 - Lx7 LINE L1 -252 5628 5486 1 902 4316 204 61 92 chr1 41622572 41623483 -155571949 + Lx7 LINE L1 6451 7367 -329 2 902 2502 113 77 12 chr1 41623483 41623887 -155571545 - L1_Mus3 LINE L1 -5 6633 6204 2 902 1318 99 0 90 chr1 41623889 41624122 -155571310 - L1Md_F2 LINE L1 -3 6579 6368 2 902 4316 204 61 92 chr1 41624122 41624193 -155571239 + Lx7 LINE L1 7368 7368 -328 2 902 930 115 0 0 chr1 41624193 41624367 -155571065 + (TC)n Simple_repeat Simple_repeat 1 174 0 2 902 4316 209 58 87 chr1 41624367 41624684 -155570748 + Lx7 LINE L1 7332 7675 -21 2 902 210 37 0 0 chr1 41624792 41624819 -155570613 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 902 408 368 36 36 chr1 41626324 41626516 -155568916 - B3A SINE B2 -3 195 4 2 902 24 32 0 0 chr1 41627006 41627037 -155568395 + AT_rich Low_complexity Low_complexity 1 31 0 2 902 2173 111 46 38 chr1 41628217 41628590 -155566842 + Lx LINE L1 6275 6650 -4 2 902 180 122 39 39 chr1 41628802 41628853 -155566579 + CT-rich Low_complexity Low_complexity 3 53 0 2 902 281 298 115 87 chr1 41629005 41629673 -155565759 - Charlie2a DNA MER1_type -300 2561 1875 2 902 384 77 0 0 chr1 41630178 41630230 -155565202 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 902 388 256 171 0 chr1 41630645 41630762 -155564670 - MLT1E1A LTR MaLR 0 680 544 2 902 790 281 33 22 chr1 41631059 41631335 -155564097 + B4A SINE B4 4 282 -10 2 902 357 116 0 0 chr1 41631348 41631417 -155564015 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 2 902 23 0 0 0 chr1 41631450 41631473 -155563959 + AT_rich Low_complexity Low_complexity 1 23 0 2 902 906 60 0 0 chr1 41632438 41632555 -155562877 + (CATATA)n Simple_repeat Simple_repeat 4 120 0 2 902 312 311 57 37 chr1 41632751 41632901 -155562531 + L1M5 LINE L1 3686 3844 -2302 2 902 2314 92 6 12 chr1 41632901 41633230 -155562202 - ORR1A2 LTR MaLR 0 327 1 2 902 312 311 57 37 chr1 41633230 41633379 -155562053 + L1M5 LINE L1 3845 3990 -2156 2 902 1077 136 0 0 chr1 41633448 41633625 -155561807 + (GGA)n Simple_repeat Simple_repeat 1 177 0 2 902 400 137 9 38 chr1 41633634 41633740 -155561692 + GA-rich Low_complexity Low_complexity 4 106 0 2 902 1220 61 0 22 chr1 41633740 41633923 -155561509 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 902 986 278 77 80 chr1 41634003 41634215 -155561217 - RMER4B LTR ERVK 0 466 247 2 902 752 61 0 82 chr1 41634215 41634411 -155561021 + (CAG)n Simple_repeat Simple_repeat 1 180 0 2 902 986 236 46 23 chr1 41634411 41634646 -155560786 - RMER4B LTR ERVK -321 264 22 2 902 282 159 0 0 chr1 41634665 41634734 -155560698 + T-rich Low_complexity Low_complexity 1 69 0 2 902 1212 61 0 0 chr1 41634734 41634881 -155560551 - B1_Mm SINE Alu 0 147 1 2 902 514 318 126 35 chr1 41635858 41636424 -155559008 + L1MCb LINE L1 703 1190 -4855 2 902 329 269 177 38 chr1 41637399 41637608 -155557824 + Lx7 LINE L1 5595 5832 -1864 2 902 365 351 48 5 chr1 41637611 41637817 -155557615 - Lx8 LINE L1 -1023 6450 6236 2 902 2072 124 12 58 chr1 41638119 41638462 -155556970 + ORR1A2 LTR MaLR 1 327 0 2 902 1390 292 27 0 chr1 41638660 41639099 -155556333 - RMER15-int LTR ERVL -3367 1632 1182 2 902 618 221 73 44 chr1 41639329 41639533 -155555899 - B3 SINE B2 -5 211 2 2 902 1265 256 118 8 chr1 41639866 41640224 -155555208 - MTD LTR MaLR -14 405 18 2 902 243 0 0 0 chr1 41640226 41640253 -155555179 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 902 839 245 176 13 chr1 41640334 41640652 -155554780 + ORR1D2 LTR MaLR 1 370 0 2 902 359 373 32 5 chr1 41640748 41640934 -155554498 - RMER15 LTR ERVL -13 562 372 2 902 2975 89 2 5 chr1 41641007 41641415 -155554017 + MTB_Mm LTR MaLR 1 407 0 2 902 315 0 0 0 chr1 41641549 41641584 -155553848 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 902 384 345 107 19 chr1 41641607 41642018 -155553414 + L1MC LINE L1 2399 2845 -3301 2 902 2096 168 62 30 chr1 41642045 41642451 -155552981 - MTC LTR MaLR -2 419 1 2 902 288 250 52 19 chr1 41642494 41642649 -155552783 + L1MC LINE L1 2916 3075 -3071 2 902 1179 280 55 44 chr1 41642854 41643168 -155552264 + MTEb LTR MaLR 1 321 -58 2 902 2327 177 30 0 chr1 41643168 41643574 -155551858 - MTC LTR MaLR -1 420 3 2 902 1179 280 55 44 chr1 41643574 41643621 -155551811 + MTEb LTR MaLR 322 366 -13 2 902 263 252 69 23 chr1 41643726 41643856 -155551576 + L1M5 LINE L1 4518 4653 -1493 2 902 344 235 220 40 chr1 41644025 41644198 -155551234 + L1MD LINE L1 4855 5058 -1088 2 902 324 0 0 0 chr1 41644377 41644413 -155551019 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 902 403 328 52 56 chr1 41644750 41644868 -155550564 - MLT1B LTR MaLR -112 278 161 2 902 6190 156 21 14 chr1 41644868 41645982 -155549450 + Lx2 LINE L1 5876 6997 0 2 902 403 328 52 56 chr1 41645982 41646115 -155549317 - MLT1B LTR MaLR -230 160 28 2 902 210 191 0 0 chr1 41646589 41646636 -155548796 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 902 22 35 0 0 chr1 41646785 41646814 -155548618 + AT_rich Low_complexity Low_complexity 1 29 0 2 902 487 260 22 33 chr1 41646944 41647127 -155548305 + L1MC4a LINE L1 6226 6406 -1476 2 902 10142 70 2 1 chr1 41647519 41648921 -155546511 + L1Md_F2 LINE L1 4183 5586 -297 2 902 7537 77 0 9 chr1 41648922 41649921 -155545511 + L1Md_F2 LINE L1 5588 6577 -5 2 902 312 27 0 0 chr1 41649966 41650003 -155545429 + (TCC)n Simple_repeat Simple_repeat 1 37 0 2 902 1003 124 0 11 chr1 41650003 41650182 -155545250 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 902 255 152 0 0 chr1 41650679 41650725 -155544707 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2 902 322 295 75 30 chr1 41650729 41650862 -155544570 + L1MC4a LINE L1 6756 6894 -891 2 902 244 164 15 15 chr1 41650924 41650992 -155544440 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 902 309 321 59 7 chr1 41651239 41651374 -155544058 + L1MC4a LINE L1 6187 6328 -1554 2 902 325 320 20 13 chr1 41651745 41651897 -155543535 + L1MC4a LINE L1 7366 7518 -477 2 902 391 309 117 45 chr1 41652023 41652332 -155543100 - L1ME3A LINE L1 0 6173 5843 2 902 471 314 84 25 chr1 41652986 41653270 -155542162 + L1MC4a LINE L1 5650 5950 -1932 2 902 362 269 19 19 chr1 41654159 41654265 -155541167 - B3A SINE B2 0 198 93 2 902 310 186 33 55 chr1 41654392 41654483 -155540949 + L1M4 LINE L1 5086 5174 -972 2 902 701 268 27 11 chr1 41654538 41654723 -155540709 + B3 SINE B2 29 216 0 2 902 545 306 206 42 chr1 41654948 41655258 -155540174 + ORR1E LTR MaLR 1 361 -9 2 902 360 264 335 32 chr1 41655306 41655491 -155539941 + ORR1E-int LTR MaLR 45 285 -1085 2 902 7509 104 9 15 chr1 41655516 41656782 -155538650 + L1_Mus1 LINE L1 4732 6011 -556 2 902 1163 82 0 0 chr1 41656782 41656929 -155538503 + B1_Mm SINE Alu 1 147 0 2 902 5184 94 9 44 chr1 41656929 41657324 -155538108 + L1_Mus1 LINE L1 6012 6373 -194 2 902 1016 284 40 79 chr1 41657324 41657703 -155537729 + ORR1E-int LTR MaLR 999 1362 -8 2 902 1019 300 72 38 chr1 41657712 41658058 -155537374 + ORR1E LTR MaLR 2 359 0 2 902 291 292 57 32 chr1 41659423 41659547 -155535885 + Lx8 LINE L1 7130 7256 -217 2 902 386 311 32 32 chr1 41659767 41659983 -155535449 + Lx9 LINE L1 7222 7437 -207 2 902 767 52 0 0 chr1 41660169 41660265 -155535167 + B1_Mus2 SINE Alu 43 138 -9 2 902 261 247 0 11 chr1 41660286 41660376 -155535056 + A-rich Low_complexity Low_complexity 2 90 0 2 902 255 254 0 0 chr1 41660443 41660514 -155534918 + CT-rich Low_complexity Low_complexity 2 72 0 2 902 294 286 75 19 chr1 41663229 41663336 -155532096 + PB1D10 SINE Alu 2 114 -3 2 902 217 311 39 39 chr1 41663337 41663414 -155532018 + ID SINE ID 7 83 -141 2 902 1222 251 66 34 chr1 41663571 41663932 -155531500 - MTE2b LTR MaLR -4 370 1 2 902 334 319 48 9 chr1 41664273 41664418 -155531014 - B1F SINE Alu 0 149 1 2 902 207 0 0 0 chr1 41665064 41665087 -155530345 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 902 704 244 0 8 chr1 41665133 41665261 -155530171 - B1_Mur3 SINE Alu -20 129 3 2 902 226 114 0 79 chr1 41665233 41665271 -155530161 - MT2B LTR ERVL -314 287 253 2 902 450 0 0 0 chr1 41665700 41665750 -155529682 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 902 251 259 19 0 chr1 41665751 41665805 -155529627 - ID4_ SINE ID -11 72 18 2 902 643 150 0 53 chr1 41666227 41666417 -155529015 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 902 737 283 45 35 chr1 41666423 41666712 -155528720 - B4A SINE B4 0 292 1 2 902 324 304 31 90 chr1 41668694 41668900 -155526532 - MIRc SINE MIR -32 236 35 2 902 2639 153 7 18 chr1 41669480 41669931 -155525501 - Lx3C LINE L1 -8 6968 6523 2 902 463 172 11 0 chr1 41669932 41670019 -155525413 - L1_Mur1 LINE L1 -6223 759 672 2 902 325 249 48 68 chr1 41670812 41671062 -155524370 - RMER17C LTR ERVK -154 256 12 2 902 1105 90 0 0 chr1 41671381 41671525 -155523907 + B1_Mm SINE Alu 2 145 -2 2 902 198 118 0 0 chr1 41673757 41673791 -155521641 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 902 488 68 14 0 chr1 41674739 41674812 -155520620 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 902 33 25 0 0 chr1 41675283 41675323 -155520109 + AT_rich Low_complexity Low_complexity 1 40 0 2 902 2960 235 57 70 chr1 41675395 41676312 -155519120 + MTD-int LTR MaLR 331 1235 -23 2 902 1611 220 108 8 chr1 41676312 41676692 -155518740 + MTD LTR MaLR 2 419 0 2 902 711 259 87 61 chr1 41676692 41677004 -155518428 - Lx8 LINE L1 -492 6981 6662 2 902 4187 115 2 0 chr1 41677000 41677598 -155517834 + Lx2 LINE L1 6047 6645 -352 2 902 1151 129 115 0 chr1 41677587 41677796 -155517636 + Lx2 LINE L1 6765 6997 0 2 902 35 24 0 0 chr1 41677798 41677840 -155517592 + AT_rich Low_complexity Low_complexity 1 42 0 2 902 1549 270 18 35 chr1 41677861 41678260 -155517172 - MTD LTR MaLR -27 392 1 2 902 296 282 0 0 chr1 41678261 41678332 -155517100 - Lx8 LINE L1 -814 6659 6589 2 902 818 246 17 0 chr1 41678345 41678520 -155516912 - Lx8 LINE L1 -952 6521 6344 2 902 1983 186 39 10 chr1 41679223 41679629 -155515803 + MTC LTR MaLR 2 419 -2 2 902 235 268 61 0 chr1 41680281 41680355 -155515077 + MLT2B3 LTR ERVL 11 88 -427 2 902 233 313 54 104 chr1 41680427 41680736 -155514696 + MTEb LTR MaLR 77 374 -5 2 112 404 282 223 0 chr1 41680770 41681142 -155514290 + L1M4b LINE L1 2381 2835 -4499 2 903 24 32 0 0 chr1 41681193 41681224 -155514208 + AT_rich Low_complexity Low_complexity 1 31 0 2 903 325 231 89 20 chr1 41681239 41681385 -155514047 + L1M4b LINE L1 2968 3123 -4211 2 903 358 254 122 34 chr1 41681527 41681674 -155513758 + L1MEf LINE L1 2058 2217 -3983 2 903 270 279 18 55 chr1 41681745 41681855 -155513577 - MLT1C LTR MaLR 0 467 362 2 903 283 354 45 71 chr1 41682123 41682278 -155513154 - MLT1C-int LTR MaLR -174 1197 1047 2 903 2566 121 10 12 chr1 41682514 41682916 -155512516 - L1_Mus4 LINE L1 0 6636 6236 2 903 783 271 107 14 chr1 41683128 41683390 -155512042 + ORR1E LTR MaLR 1 313 -66 3 903 213 94 0 0 chr1 41683394 41683426 -155512006 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 3 903 597 124 0 0 chr1 41683477 41683574 -155511858 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 903 682 257 21 43 chr1 41684146 41684465 -155510967 + L1_Mur3 LINE L1 2660 2980 -2900 3 903 186 43 0 0 chr1 41684864 41684887 -155510545 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 3 903 433 174 72 19 chr1 41684894 41685012 -155510420 - B1_Mur2 SINE Alu 0 149 2 3 903 617 101 0 10 chr1 41685776 41685876 -155509556 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 903 382 354 21 34 chr1 41685916 41686153 -155509279 - RMER15 LTR ERVL -126 449 216 3 903 207 100 0 0 chr1 41686944 41686974 -155508458 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 903 678 13 0 0 chr1 41688147 41688226 -155507206 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 903 2122 159 26 20 chr1 41688746 41689137 -155506295 + MTB_Mm LTR MaLR 5 397 -10 3 903 244 345 24 0 chr1 41690295 41690379 -155505053 + (CATG)n Simple_repeat Simple_repeat 2 87 0 3 903 21 36 0 0 chr1 41690390 41690418 -155505014 + AT_rich Low_complexity Low_complexity 1 28 0 3 903 1848 242 110 38 chr1 41690434 41691015 -155504417 - Lx9 LINE L1 -356 7288 6666 3 903 1238 59 0 0 chr1 41693681 41693833 -155501599 + L1_Mm LINE L1 5555 5706 -177 3 903 598 288 17 58 chr1 41694010 41694183 -155501249 + B3A SINE B2 8 173 -25 3 903 2820 235 39 102 chr1 41694721 41695852 -155499580 + L1_Rod LINE L1 3889 4948 -899 3 903 974 299 122 25 chr1 41696763 41696786 -155498646 - MTD LTR MaLR -14 405 388 3 903 3150 75 0 2 chr1 41696786 41697187 -155498245 + MTB LTR MaLR 1 400 0 3 903 974 299 122 25 chr1 41697187 41697517 -155497915 - MTD LTR MaLR -32 387 18 3 903 22 35 0 0 chr1 41697574 41697603 -155497829 + AT_rich Low_complexity Low_complexity 1 29 0 3 903 914 210 70 14 chr1 41697858 41698071 -155497361 + URR1A DNA MER1_type 2 226 0 3 903 229 209 0 0 chr1 41698361 41698404 -155497028 + GA-rich Low_complexity Low_complexity 4 46 0 3 903 638 314 61 24 chr1 41699689 41699901 -155495531 + B4A SINE B4 21 240 -52 3 903 387 0 0 0 chr1 41699934 41699977 -155495455 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 903 767 75 8 0 chr1 41699977 41700096 -155495336 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 903 181 333 0 16 chr1 41701158 41701219 -155494213 - L2 LINE L2 -366 3053 2994 3 903 1322 257 90 13 chr1 41701314 41701692 -155493740 - MTD LTR MaLR -12 407 1 3 903 193 333 85 8 chr1 41701851 41701981 -155493451 + MIR SINE MIR 64 203 -59 3 903 1359 274 0 0 chr1 41702314 41702602 -155492830 - MTE2b LTR MaLR -90 289 2 3 903 319 233 19 0 chr1 41703281 41703384 -155492048 + GA-rich Low_complexity Low_complexity 2 106 0 3 903 1194 82 0 0 chr1 41703384 41703717 -155491715 + (TAGA)n Simple_repeat Simple_repeat 1 333 0 3 903 202 116 47 0 chr1 41703733 41703776 -155491656 + GA-rich Low_complexity Low_complexity 2 46 0 3 903 520 257 35 7 chr1 41705197 41705338 -155490094 - B1_Mur1 SINE Alu -1 148 4 3 903 862 168 0 16 chr1 41706657 41706839 -155488593 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 903 1091 226 79 11 chr1 41709154 41709431 -155486001 - AmnSINE1 SINE SINE -62 513 218 3 903 451 328 119 15 chr1 41711108 41711368 -155484064 - MER74B LTR ERVL -4 618 332 3 903 474 268 103 49 chr1 41711856 41712060 -155483372 - B3 SINE B2 0 216 2 3 903 2686 228 83 44 chr1 41712624 41712794 -155482638 - Lx9 LINE L1 0 7644 7457 3 903 315 0 0 0 chr1 41712794 41712829 -155482603 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 903 405 0 0 0 chr1 41712829 41712873 -155482559 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 903 2686 228 83 44 chr1 41712873 41713567 -155481865 - Lx9 LINE L1 -188 7456 6746 3 903 725 212 5 32 chr1 41713569 41713754 -155481678 + L1_Rod LINE L1 5066 5245 -602 3 903 495 102 0 0 chr1 41713754 41713842 -155481590 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 903 275 297 95 42 chr1 41714387 41714482 -155480950 - PB1D10 SINE Alu -8 109 10 3 903 1125 66 0 0 chr1 41714494 41714631 -155480801 + B1_Mm SINE Alu 1 137 -10 3 903 186 43 0 0 chr1 41714631 41714654 -155480778 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 903 458 319 71 43 chr1 41714687 41714897 -155480535 - B3 SINE B2 0 216 1 3 903 1272 211 89 34 chr1 41715703 41716061 -155479371 + RMER16 LTR ERVK 156 533 0 3 903 442 280 201 33 chr1 41716998 41717390 -155478042 - L1MEg LINE L1 -4990 1094 637 3 903 250 339 25 67 chr1 41717431 41717551 -155477881 - B1F SINE Alu 0 149 35 3 903 216 135 0 0 chr1 41717928 41717965 -155477467 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 3 903 233 75 25 0 chr1 41718564 41718604 -155476828 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 903 239 71 24 0 chr1 41719373 41719415 -155476017 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 903 423 0 0 0 chr1 41719826 41719873 -155475559 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 903 464 0 18 0 chr1 41721020 41721076 -155474356 + (TTA)n Simple_repeat Simple_repeat 3 59 0 3 903 350 315 19 0 chr1 41721533 41721641 -155473791 + MLT1E2 LTR MaLR 7 116 -511 3 903 365 317 77 39 chr1 41721685 41721952 -155473480 - L1MA5 LINE L1 -6 6294 6019 3 903 378 370 93 30 chr1 41721968 41722364 -155473068 + MLT1E2 LTR MaLR 205 625 -2 3 903 359 311 123 24 chr1 41722481 41722676 -155472756 - MLT1A LTR MaLR -8 497 196 3 903 189 74 0 0 chr1 41723762 41723789 -155471643 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 903 584 244 6 6 chr1 41724374 41724386 -155471046 + (CA)n Simple_repeat Simple_repeat 2 13 0 3 903 729 76 0 0 chr1 41724386 41724491 -155470941 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 903 584 244 6 6 chr1 41724491 41724655 -155470777 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 903 425 154 19 0 chr1 41724657 41724761 -155470671 + (CAGA)n Simple_repeat Simple_repeat 4 109 0 3 903 204 231 0 0 chr1 41725551 41725590 -155469842 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 3 903 925 290 92 31 chr1 41725590 41725845 -155469587 - MLT2D LTR ERVL -43 371 95 3 903 180 0 0 0 chr1 41725845 41725865 -155469567 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 903 925 290 92 31 chr1 41725865 41725958 -155469474 - MLT2D LTR ERVL -320 94 2 3 903 224 327 19 19 chr1 41726478 41726581 -155468851 + GA-rich Low_complexity Low_complexity 6 108 0 3 903 297 283 30 20 chr1 41727980 41728016 -155467416 + PB1D10 SINE Alu 13 49 -68 3 903 900 74 0 0 chr1 41728016 41728137 -155467295 + (GGA)n Simple_repeat Simple_repeat 3 123 0 3 903 297 283 30 20 chr1 41728137 41728201 -155467231 + PB1D10 SINE Alu 50 112 -5 3 903 284 297 0 13 chr1 41729328 41729403 -155466029 - ID4 SINE ID -6 77 4 3 903 242 143 52 0 chr1 41730296 41730373 -155465059 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 903 460 134 21 0 chr1 41730389 41730486 -155464946 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 903 213 81 54 0 chr1 41731024 41731061 -155464371 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 3 903 225 326 11 23 chr1 41732079 41732167 -155463265 + LTR48 LTR ERV1 72 158 -629 3 903 7225 2 0 0 chr1 41735016 41735815 -155459617 - L1Md_A LINE L1 0 6582 5784 3 903 3931 2 0 2 chr1 41735815 41736263 -155459169 - L1_Mm LINE L1 -2167 3716 3269 3 903 14896 7 0 0 chr1 41736261 41737989 -155457443 + L1_Mm LINE L1 1532 3259 -2624 3 903 586 263 66 31 chr1 41738076 41738381 -155457051 - Lx7 LINE L1 -1889 5807 5511 3 903 1401 162 4 8 chr1 41738390 41738645 -155456787 - Lx2 LINE L1 0 6997 6744 3 903 1173 128 0 0 chr1 41738645 41738824 -155456608 + Lx2B LINE L1 6544 6722 -278 3 903 1445 318 99 22 chr1 41738913 41740294 -155455138 - Lx7 LINE L1 -745 5398 3911 3 903 359 240 30 67 chr1 41740710 41740844 -155454588 - HAL1-3A_ME LINE L1 -765 2093 1965 3 903 431 314 56 34 chr1 41740865 41741043 -155454389 - B3A SINE B2 -16 182 1 3 903 249 262 80 88 chr1 41741440 41741553 -155453879 - PB1D9 SINE Alu -7 113 2 3 903 287 323 37 110 chr1 41741557 41741656 -155453776 - Lx7 LINE L1 -3252 2891 2804 3 903 5312 65 30 7 chr1 41741656 41742366 -155453066 - L1_Mus1 LINE L1 -1 6566 5841 3 903 287 323 37 110 chr1 41742366 41742507 -155452925 - Lx7 LINE L1 -3340 2803 2670 3 903 970 217 50 5 chr1 41742507 41742706 -155452726 + B3 SINE B2 2 209 -7 3 903 313 324 37 97 chr1 41742706 41742941 -155452491 - Lx7 LINE L1 -3474 2669 2437 3 903 2041 143 138 42 chr1 41743374 41743803 -155451629 - RMER16 LTR ERVK 0 533 64 3 903 540 0 0 0 chr1 41744263 41744323 -155451109 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 903 210 71 0 0 chr1 41744324 41744352 -155451080 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 903 944 155 165 0 chr1 41745918 41746112 -155449320 + URR1A DNA MER1_type 1 226 0 3 903 822 11 0 0 chr1 41746339 41746434 -155448998 + (TTTTG)n Simple_repeat Simple_repeat 2 96 0 3 903 233 289 81 46 chr1 41746507 41746594 -155448838 + PB1D10 SINE Alu 2 91 -26 3 903 230 222 0 53 chr1 41746808 41746865 -155448567 + C-rich Low_complexity Low_complexity 2 55 0 3 903 714 265 44 0 chr1 41746975 41747179 -155448253 + B3 SINE B2 4 216 0 3 903 277 226 136 13 chr1 41747742 41747844 -155447588 - MLT1H1 LTR MaLR -31 524 411 3 903 313 215 0 21 chr1 41748660 41748755 -155446677 + GA-rich Low_complexity Low_complexity 1 93 0 3 903 25 31 0 0 chr1 41749116 41749148 -155446284 + AT_rich Low_complexity Low_complexity 1 32 0 3 903 7536 73 38 2 chr1 41749171 41750217 -155445215 - L1_Mus3 LINE L1 0 6638 5556 3 903 1030 289 133 28 chr1 41750221 41750784 -155444648 - Lx8 LINE L1 -38 7435 6814 3 903 1328 286 24 45 chr1 41750811 41751236 -155444196 + MTD LTR MaLR 1 416 -3 3 903 1044 279 17 24 chr1 41751324 41751621 -155443811 - Lx8 LINE L1 -807 6666 6372 3 903 624 247 0 0 chr1 41751694 41751864 -155443568 + (TA)n Simple_repeat Simple_repeat 2 171 0 3 903 240 246 0 0 chr1 41751887 41751956 -155443476 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 903 670 193 6 6 chr1 41751971 41752143 -155443289 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 903 210 71 0 0 chr1 41752195 41752223 -155443209 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 3 903 918 256 109 3 chr1 41752223 41752525 -155442907 - L1_Mur3 LINE L1 -606 5274 4941 3 903 1482 98 0 113 chr1 41752613 41752878 -155442554 - L1_Mus2 LINE L1 -1 6565 6331 4 903 510 17 0 0 chr1 41753541 41753600 -155441832 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 903 453 19 0 0 chr1 41753600 41753653 -155441779 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 903 465 34 0 0 chr1 41754611 41754670 -155440762 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 903 384 119 0 0 chr1 41754670 41754728 -155440704 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 903 270 282 23 12 chr1 41755279 41755365 -155440067 + CT-rich Low_complexity Low_complexity 3 89 0 4 903 723 312 34 21 chr1 41755642 41755881 -155439551 - Tigger5 DNA MER2_type -2164 242 1 4 903 393 367 18 28 chr1 41756516 41756802 -155438630 + B4A SINE B4 3 285 -7 4 903 405 175 0 0 chr1 41756817 41756920 -155438512 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 903 1185 239 96 33 chr1 41757814 41758177 -155437255 - ORR1B1 LTR MaLR -8 386 1 4 903 459 0 0 0 chr1 41758221 41758272 -155437160 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 903 230 262 24 36 chr1 41758349 41758432 -155437000 + MTE2a LTR MaLR 284 365 -14 4 903 351 65 0 0 chr1 41758474 41758520 -155436912 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 903 766 308 52 85 chr1 41759231 41759282 -155436150 - MTE2a LTR MaLR -2 377 325 4 903 1742 155 127 14 chr1 41759282 41759629 -155435803 + ORR1B1 LTR MaLR 5 390 -4 4 903 766 308 52 85 chr1 41759629 41759964 -155435468 - MTE2a LTR MaLR -55 324 4 4 903 21 36 0 0 chr1 41760558 41760586 -155434846 + AT_rich Low_complexity Low_complexity 1 28 0 4 903 814 326 40 8 chr1 41761149 41761520 -155433912 + Lx9 LINE L1 7054 7436 -208 4 903 606 267 13 32 chr1 41761800 41761955 -155433477 - ID_B1 SINE B4 -69 155 4 4 903 896 218 86 0 chr1 41762180 41762377 -155433055 - B3 SINE B2 -2 214 1 4 903 25 31 0 0 chr1 41763301 41763333 -155432099 + AT_rich Low_complexity Low_complexity 1 32 0 4 903 2168 255 24 9 chr1 41763484 41764035 -155431397 + Lx7 LINE L1 6763 7321 -375 4 903 307 236 0 38 chr1 41764035 41764167 -155431265 + T-rich Low_complexity Low_complexity 2 128 0 4 903 489 284 67 58 chr1 41764740 41764753 -155430679 + CYRA11_Mm Unknown Y-chromosome 163 271 -346 4 903 997 200 75 0 chr1 41764753 41764953 -155430479 - URR1A DNA MER1_type -5 221 7 4 903 489 284 67 58 chr1 41764953 41764964 -155430468 + CYRA11_Mm Unknown Y-chromosome 272 388 -229 4 903 307 157 0 19 chr1 41765307 41765359 -155430073 - HAL1-3A_ME LINE L1 -835 2023 1973 4 903 195 191 14 29 chr1 41765359 41765429 -155430003 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 903 372 197 49 8 chr1 41765455 41765709 -155429723 + (TG)n Simple_repeat Simple_repeat 1 264 0 4 903 444 98 59 0 chr1 41765724 41765826 -155429606 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 903 226 321 50 109 chr1 41765972 41766091 -155429341 - B4A SINE B4 -145 147 36 4 903 4715 72 46 0 chr1 41766505 41767133 -155428299 + L1_Mus1 LINE L1 5911 6567 0 4 903 186 43 0 0 chr1 41767283 41767306 -155428126 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 903 330 26 0 0 chr1 41767747 41767786 -155427646 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 903 539 0 30 0 chr1 41768042 41768108 -155427324 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 4 903 401 0 20 0 chr1 41768114 41768163 -155427269 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 903 239 329 0 41 chr1 41768704 41768777 -155426655 + ID4_ SINE ID 10 79 -4 4 903 222 37 0 0 chr1 41769198 41769225 -155426207 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 903 1589 276 53 55 chr1 41770428 41770976 -155424456 - MMAR1 DNA Mariner -5 1281 735 4 903 1454 176 72 36 chr1 41770976 41771075 -155424357 - Lx LINE L1 -17 6637 6538 4 903 249 108 0 0 chr1 41771075 41771112 -155424320 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 903 1454 176 72 36 chr1 41771112 41771318 -155424114 - Lx LINE L1 -117 6537 6322 4 903 1417 145 25 4 chr1 41771321 41771556 -155423876 - Lx LINE L1 -510 6144 5905 4 903 1543 288 35 54 chr1 41771556 41772050 -155423382 - MMAR1 DNA Mariner -560 726 230 4 903 1147 68 0 0 chr1 41772050 41772196 -155423236 + B1_Mm SINE Alu 1 146 -1 4 903 1543 288 35 54 chr1 41772196 41772296 -155423136 - MMAR1 DNA Mariner -1057 229 144 4 903 1218 288 83 25 chr1 41772301 41772697 -155422735 + MTD LTR MaLR 1 419 0 4 903 378 0 0 0 chr1 41772724 41772766 -155422666 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 903 472 274 16 0 chr1 41772781 41772905 -155422527 - MMAR1 DNA Mariner -1148 138 13 4 903 190 132 38 0 chr1 41773101 41773154 -155422278 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 903 414 0 0 0 chr1 41773556 41773602 -155421830 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 903 2746 99 7 17 chr1 41774399 41774810 -155420622 - MTB_Mm LTR MaLR 0 407 1 4 903 564 299 73 0 chr1 41774911 41775088 -155420344 + B3A SINE B2 5 194 -4 4 903 755 281 59 11 chr1 41775368 41775641 -155419791 + Lx7 LINE L1 6553 6838 -858 4 903 6239 117 19 31 chr1 41777204 41778201 -155417231 - Lx LINE L1 0 6654 5670 4 903 728 134 63 0 chr1 41778203 41778330 -155417102 + L1VL2 LINE L1 80 214 -6121 4 903 207 0 0 0 chr1 41782790 41782813 -155412619 + (T)n Simple_repeat Simple_repeat 1 23 0 4 903 5862 52 1 3 chr1 41782857 41783592 -155411840 - L1Md_F2 LINE L1 -3 6579 5846 4 903 674 296 65 77 chr1 41783599 41783903 -155411529 + MTD LTR MaLR 12 334 -85 4 903 334 253 91 11 chr1 41784661 41784749 -155410683 + B3 SINE B2 1 95 -121 4 903 183 42 0 0 chr1 41785167 41785191 -155410241 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 903 650 284 0 0 chr1 41785191 41785325 -155410107 - B1_Mur1 SINE Alu -15 134 1 4 903 542 131 0 0 chr1 41785333 41785417 -155410015 - B1_Mus2 SINE Alu -63 84 1 4 903 1453 132 13 0 chr1 41785717 41785945 -155409487 + Lx5 LINE L1 5851 6081 -969 4 903 2218 177 35 84 chr1 41785970 41786483 -155408949 + Lx5 LINE L1 6278 6765 -285 4 903 486 300 300 0 chr1 41786483 41786720 -155408712 - MTEb LTR MaLR -3 376 69 4 903 1228 160 138 12 chr1 41786724 41786971 -155408461 + Lx5 LINE L1 6772 7049 -1 4 903 444 317 6 0 chr1 41787120 41787338 -155408094 + (CA)n Simple_repeat Simple_repeat 1 219 0 4 903 301 297 171 0 chr1 41787372 41787483 -155407949 + MT2A LTR ERVL 393 522 -11 4 903 1815 169 0 7 chr1 41787942 41788252 -155407180 - RLTR10E LTR ERVK -3 308 1 4 903 536 290 84 21 chr1 41788288 41788643 -155406789 - MTC LTR MaLR -14 405 1 4 903 583 253 33 29 chr1 41788644 41788885 -155406547 + MTEa LTR MaLR 67 379 0 4 903 823 178 176 10 chr1 41789368 41789561 -155405871 - URR1B DNA MER1_type 0 225 1 4 903 429 36 0 0 chr1 41791212 41791267 -155404165 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 903 468 0 0 0 chr1 41791267 41791318 -155404114 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 903 22 0 0 0 chr1 41791830 41791852 -155403580 + AT_rich Low_complexity Low_complexity 1 22 0 4 903 276 282 66 12 chr1 41791901 41792030 -155403402 + BC1_Mm scRNA scRNA 8 142 -10 4 903 428 297 0 35 chr1 41792045 41792150 -155403282 + PB1D10 SINE Alu 5 106 -11 4 903 240 86 0 0 chr1 41792150 41792185 -155403247 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 903 926 175 11 5 chr1 41793278 41793468 -155401964 - Lx2B LINE L1 -17 6983 6793 4 903 765 186 271 6 chr1 41793871 41794090 -155401342 - ORR1D1 LTR MaLR -59 325 51 4 903 271 278 0 0 chr1 41794313 41794367 -155401065 + URR1B DNA MER1_type 1 54 -171 4 903 1404 65 0 0 chr1 41794716 41794900 -155400532 - L1Md_T LINE L1 0 6582 6399 4 903 890 160 0 89 chr1 41794900 41795079 -155400353 + URR1B DNA MER1_type 60 222 -3 4 903 485 286 46 92 chr1 41795079 41795163 -155400269 - CYRA11_Mm Unknown Y-chromosome -460 157 86 4 903 296 295 55 147 chr1 41795189 41795515 -155399917 + L2 LINE L2 2326 2621 -798 4 903 310 351 44 0 chr1 41795705 41795819 -155399613 + MER20 DNA MER1_type 7 125 -94 4 903 354 326 56 14 chr1 41796269 41796412 -155399020 - MLT1A LTR MaLR -52 322 174 4 903 189 0 0 0 chr1 41796432 41796453 -155398979 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 903 569 34 34 11 chr1 41796453 41796542 -155398890 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 903 208 348 0 0 chr1 41796955 41797024 -155398408 + MIRm SINE MIR 105 173 -103 4 903 201 178 0 0 chr1 41797276 41797321 -155398111 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4 903 33 0 0 0 chr1 41798075 41798108 -155397324 + AT_rich Low_complexity Low_complexity 1 33 0 4 903 238 244 147 96 chr1 41798261 41798397 -155397035 - B4A SINE B4 -2 290 148 4 903 207 186 0 0 chr1 41798430 41798473 -155396959 + CT-rich Low_complexity Low_complexity 2 44 0 4 903 240 100 0 0 chr1 41798476 41798516 -155396916 + (CAT)n Simple_repeat Simple_repeat 2 41 0 4 903 373 290 90 0 chr1 41798563 41798663 -155396769 - B1F SINE Alu -39 110 2 4 903 260 19 36 55 chr1 41800743 41800798 -155394634 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 903 217 250 0 0 chr1 41802274 41802318 -155393114 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 4 903 261 75 0 0 chr1 41803483 41803523 -155391909 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 903 299 25 25 0 chr1 41803524 41803564 -155391868 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 903 25 90 0 0 chr1 41803566 41803633 -155391799 + AT_rich Low_complexity Low_complexity 1 67 0 4 903 38 22 0 0 chr1 41804137 41804182 -155391250 + AT_rich Low_complexity Low_complexity 1 45 0 4 903 35 24 0 0 chr1 41805836 41805878 -155389554 + AT_rich Low_complexity Low_complexity 1 42 0 4 903 188 333 18 0 chr1 41807311 41807368 -155388064 + L2a LINE L2 3367 3424 -2 4 903 21 0 0 0 chr1 41808021 41808042 -155387390 + AT_rich Low_complexity Low_complexity 1 21 0 4 903 267 31 0 0 chr1 41809697 41809729 -155385703 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 903 335 298 112 0 chr1 41810089 41810195 -155385237 + B1F1 SINE Alu 1 117 -32 4 903 273 57 0 0 chr1 41810286 41810321 -155385111 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 4 903 369 281 190 0 chr1 41811200 41811321 -155384111 + B1_Mur1 SINE Alu 1 144 -5 4 903 505 232 6 6 chr1 41811343 41811512 -155383920 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 903 186 208 0 0 chr1 41811528 41811576 -155383856 + (TATG)n Simple_repeat Simple_repeat 2 49 0 5 903 495 0 0 0 chr1 41811585 41811640 -155383792 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 904 23 54 0 0 chr1 41812198 41812235 -155383197 + AT_rich Low_complexity Low_complexity 1 37 0 5 904 240 308 10 62 chr1 41812332 41812429 -155383003 - MER31A LTR ERV1 -14 471 380 5 904 827 343 74 21 chr1 41812473 41812812 -155382620 + MTEa-int LTR MaLR 1048 1404 -176 5 904 1090 22 7 7 chr1 41812908 41813046 -155382386 + (TCTCCC)n Simple_repeat Simple_repeat 5 142 0 5 904 477 287 119 11 chr1 41813087 41813263 -155382169 + MTEa-int LTR MaLR 1386 1580 0 5 904 698 256 38 47 chr1 41813266 41813479 -155381953 + MTEa LTR MaLR 4 214 -165 5 904 812 61 61 3 chr1 41813553 41813868 -155381564 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 5 904 805 123 0 32 chr1 41813964 41814149 -155381283 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 904 384 22 0 0 chr1 41815223 41815268 -155380164 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 904 477 0 0 0 chr1 41816618 41816671 -155378761 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 904 6237 44 5 0 chr1 41817637 41818407 -155377025 + L1Md_F2 LINE L1 5809 6582 0 5 904 236 303 56 0 chr1 41820159 41820248 -155375184 - PB1D7 SINE Alu -17 103 10 5 904 189 272 84 24 chr1 41821234 41821317 -155374115 - L3 LINE CR1 -3661 828 741 5 904 21 0 0 0 chr1 41821466 41821487 -155373945 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 459 0 0 0 chr1 41821598 41821649 -155373783 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 904 724 195 11 0 chr1 41822335 41822509 -155372923 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 904 29 0 0 0 chr1 41822625 41822654 -155372778 + AT_rich Low_complexity Low_complexity 1 29 0 5 904 21 0 0 0 chr1 41822786 41822807 -155372625 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 459 219 6 27 chr1 41823678 41823861 -155371571 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 904 639 0 0 0 chr1 41824143 41824214 -155371218 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 5 904 546 57 0 0 chr1 41824221 41824291 -155371141 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 904 328 305 123 19 chr1 41824297 41824605 -155370827 - L1MCa LINE L1 -4776 1732 1393 5 904 231 276 97 89 chr1 41824605 41824864 -155370568 + RMER12 LTR ERVK 771 1031 -291 5 904 186 209 0 0 chr1 41825084 41825127 -155370305 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 904 444 104 0 0 chr1 41825152 41825219 -155370213 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 904 584 314 87 17 chr1 41825235 41825591 -155369841 - L1MCa LINE L1 -5400 1108 728 5 904 467 201 0 6 chr1 41825594 41825774 -155369658 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 904 186 103 0 0 chr1 41825813 41825842 -155369590 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 5 904 300 125 0 0 chr1 41825842 41825890 -155369542 - HAL1-3A_ME LINE L1 -835 2023 1976 5 904 347 342 15 49 chr1 41825905 41826108 -155369324 - L1MCa LINE L1 -5801 707 512 5 904 627 268 28 59 chr1 41826371 41826657 -155368775 + BGLII_B LTR ERVK 1 277 -164 5 904 747 302 12 39 chr1 41826644 41826902 -155368530 + BGLII_B LTR ERVK 191 441 0 5 904 250 220 0 20 chr1 41826926 41826977 -155368455 - L1MCa LINE L1 -6435 73 24 5 904 310 293 86 0 chr1 41827350 41827466 -155367966 + RSINE1 SINE B4 3 128 -37 5 904 352 326 101 0 chr1 41828101 41828239 -155367193 + RSINE1 SINE B4 3 154 -11 5 904 990 141 0 0 chr1 41828239 41828409 -155367023 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 5 904 180 200 34 68 chr1 41828812 41828871 -155366561 + L3 LINE CR1 793 849 -3640 5 904 21 36 0 0 chr1 41831214 41831242 -155364190 + AT_rich Low_complexity Low_complexity 1 28 0 5 904 282 250 63 38 chr1 41832693 41832772 -155362660 + B1F SINE Alu 20 100 -49 5 904 207 162 0 0 chr1 41833145 41833182 -155362250 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 904 28 48 0 0 chr1 41833326 41833368 -155362064 + AT_rich Low_complexity Low_complexity 1 42 0 5 904 670 247 42 12 chr1 41833392 41833560 -155361872 + B3 SINE B2 8 180 -36 5 904 537 30 0 0 chr1 41833560 41833627 -155361805 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 904 246 62 0 0 chr1 41833627 41833658 -155361774 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 904 212 398 0 12 chr1 41833803 41833887 -155361545 + RSINE1 SINE B4 5 87 -78 5 904 522 298 89 0 chr1 41833817 41833975 -155361457 + B3 SINE B2 17 188 -28 5 904 24 0 0 0 chr1 41833987 41834011 -155361421 + AT_rich Low_complexity Low_complexity 1 24 0 5 904 339 232 18 49 chr1 41834028 41834135 -155361297 - Lx9 LINE L1 -26 7618 7517 5 904 405 123 0 0 chr1 41834135 41834200 -155361232 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 904 339 232 18 49 chr1 41834200 41834255 -155361177 - Lx9 LINE L1 -128 7516 7462 5 904 218 247 0 24 chr1 41834261 41834344 -155361088 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 5 904 232 210 9 65 chr1 41834345 41834452 -155360980 + L1MCa LINE L1 1854 1954 -4554 5 904 387 56 0 0 chr1 41834452 41834506 -155360926 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 904 3642 268 71 29 chr1 41834506 41835734 -155359698 - Lx9 LINE L1 -189 7455 6168 5 904 339 65 22 0 chr1 41836546 41836592 -155358840 - HAL1-3A_ME LINE L1 -836 2022 1976 5 904 281 231 8 0 chr1 41836593 41836714 -155358718 + (TG)n Simple_repeat Simple_repeat 1 122 0 5 904 712 129 26 0 chr1 41837619 41837735 -155357697 + PB1D9 SINE Alu 1 119 -1 5 904 1224 101 0 0 chr1 41837748 41837926 -155357506 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 904 221 145 0 52 chr1 41838353 41838411 -155357021 + T-rich Low_complexity Low_complexity 1 55 0 5 904 782 223 10 3 chr1 41839026 41839324 -155356108 + (TA)n Simple_repeat Simple_repeat 1 299 0 5 904 627 238 58 78 chr1 41839324 41839521 -155355911 + ID_B1 SINE B4 11 208 -84 5 904 271 335 124 35 chr1 41840512 41840713 -155354719 + Tigger5 DNA MER2_type 4 222 -2184 5 904 399 21 0 0 chr1 41842872 41842920 -155352512 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 904 214 167 0 0 chr1 41843420 41843456 -155351976 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 904 985 279 35 42 chr1 41843456 41843744 -155351688 + MTE2b LTR MaLR 67 352 -27 5 904 436 278 98 40 chr1 41843822 41844219 -155351213 + Lx4A LINE L1 5325 5744 -556 5 904 229 259 0 0 chr1 41844219 41844273 -155351159 + MTE2b LTR MaLR 199 252 -127 5 904 273 219 29 7 chr1 41844288 41844374 -155351058 + Lx4A LINE L1 5750 5856 -444 5 904 239 272 61 0 chr1 41844502 41844616 -155350816 + Lx4A LINE L1 6048 6168 -132 5 904 273 75 0 0 chr1 41845241 41845281 -155350151 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 904 449 240 40 0 chr1 41845363 41845463 -155349969 - RSINE1 SINE B4 -41 124 21 5 904 257 208 62 38 chr1 41846171 41846251 -155349181 - L1_Mur3 LINE L1 -461 5419 5338 5 904 22 0 0 0 chr1 41846405 41846427 -155349005 + AT_rich Low_complexity Low_complexity 1 22 0 5 904 182 211 56 37 chr1 41846653 41846707 -155348725 + L3 LINE CR1 2189 2243 -2246 5 904 232 158 103 126 chr1 41847966 41848053 -155347379 + L1M5 LINE L1 5700 5784 -389 5 904 362 231 59 28 chr1 41848092 41848241 -155347191 + L1MA6 LINE L1 5831 5984 -316 5 904 180 152 0 0 chr1 41848592 41848625 -155346807 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 904 413 412 47 15 chr1 41849003 41849343 -155346089 + L1MDa LINE L1 91 441 -6192 5 904 276 290 21 21 chr1 41849364 41849459 -155345973 + PB1D10 SINE Alu 23 117 0 5 904 690 65 0 0 chr1 41849471 41849563 -155345869 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 5 904 1054 68 0 33 chr1 41849563 41849746 -155345686 + (GGGA)n Simple_repeat Simple_repeat 2 178 0 5 904 273 271 44 29 chr1 41850343 41850480 -155344952 - L1MDa LINE L1 -4010 2623 2485 5 904 480 348 41 35 chr1 41850530 41850700 -155344732 - B3A SINE B2 -15 183 13 5 904 260 191 29 0 chr1 41851001 41851069 -155344363 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 5 904 259 303 88 18 chr1 41851075 41851347 -155344085 - L1MDa LINE L1 -4469 2164 1874 5 904 1590 32 0 11 chr1 41851559 41851747 -155343685 - B2_Mm1a SINE B2 -7 186 1 5 904 433 316 75 15 chr1 41851787 41851986 -155343446 + Lx8 LINE L1 7256 7466 -7 5 904 291 229 12 0 chr1 41852035 41852118 -155343314 + L1MDa LINE L1 2664 2747 -3790 5 904 226 310 139 27 chr1 41852447 41852815 -155342617 + L1MDa LINE L1 4823 5231 -1306 5 904 283 272 66 50 chr1 41852951 41853133 -155342299 + L1MDa LINE L1 5440 5624 -913 5 904 240 59 0 0 chr1 41853135 41853169 -155342263 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 904 306 236 12 0 chr1 41853169 41853339 -155342093 + (TCTA)n Simple_repeat Simple_repeat 1 172 0 5 904 492 290 66 36 chr1 41853503 41853804 -155341628 + L1MDa LINE L1 5900 6209 -424 5 904 186 71 0 0 chr1 41853996 41854024 -155341408 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 904 557 82 2 0 chr1 41854088 41854170 -155341262 - L1Md_F2 LINE L1 -351 5532 5420 5 904 276 59 0 0 chr1 41854159 41854193 -155341239 + L1Md_F2 LINE L1 5553 5586 -297 5 904 8128 38 7 2 chr1 41854193 41855179 -155340253 + L1Md_F2 LINE L1 5587 6577 -5 5 904 183 139 0 0 chr1 41855188 41855224 -155340208 + (A)n Simple_repeat Simple_repeat 1 36 0 5 904 883 123 22 0 chr1 41855224 41855362 -155340070 + B2_Mm2 SINE B2 39 179 -16 5 904 548 136 52 17 chr1 41855565 41855737 -155339695 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 5 904 374 178 11 0 chr1 41855828 41855918 -155339514 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 904 445 155 54 0 chr1 41855907 41856055 -155339377 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 5 904 240 86 0 0 chr1 41856079 41856114 -155339318 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 904 25 31 0 0 chr1 41856568 41856600 -155338832 + AT_rich Low_complexity Low_complexity 1 32 0 5 904 189 74 0 0 chr1 41856642 41856669 -155338763 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 904 532 317 70 46 chr1 41857720 41858004 -155337428 - B4A SINE B4 0 292 2 5 904 270 323 76 7 chr1 41858361 41858510 -155336922 - ID_B1 SINE B4 -33 191 2 5 904 385 349 20 7 chr1 41858587 41858737 -155336695 - ORR1E LTR MaLR -205 154 3 5 904 464 337 149 5 chr1 41861038 41861426 -155334006 + L1MC4 LINE L1 7458 7901 -141 5 904 253 102 17 17 chr1 41863394 41863454 -155331978 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 5 904 927 66 0 0 chr1 41863458 41863580 -155331852 - B1_Mm SINE Alu 0 147 26 5 904 315 0 0 0 chr1 41867242 41867277 -155328155 + (A)n Simple_repeat Simple_repeat 1 35 0 5 904 252 77 0 0 chr1 41868617 41868656 -155326776 + (T)n Simple_repeat Simple_repeat 1 39 0 5 904 999 87 0 0 chr1 41869644 41869805 -155325627 + (TG)n Simple_repeat Simple_repeat 2 162 0 5 904 552 68 0 0 chr1 41870004 41870077 -155325355 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 6 904 322 265 0 24 chr1 41871792 41871877 -155323555 + CT-rich Low_complexity Low_complexity 2 84 0 6 904 486 33 0 0 chr1 41872309 41872369 -155323063 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 904 457 308 65 40 chr1 41874018 41874265 -155321167 + MER2 DNA MER2_type 91 343 -2 6 904 24 0 0 0 chr1 41874350 41874374 -155321058 + AT_rich Low_complexity Low_complexity 1 24 0 6 904 313 254 34 34 chr1 41874834 41874981 -155320451 - L1MC3 LINE L1 -1867 5918 5772 6 904 244 247 65 0 chr1 41875000 41875093 -155320339 - L1MC3 LINE L1 -2103 5682 5584 6 904 406 308 31 82 chr1 41875983 41876238 -155319194 - L1MC3 LINE L1 -1651 4495 4254 6 904 455 316 149 0 chr1 41876267 41876441 -155318991 - B3 SINE B2 -12 204 5 6 904 342 346 55 36 chr1 41876467 41876797 -155318635 - L1MD LINE L1 -1899 4247 3912 6 904 378 170 0 0 chr1 41878421 41878515 -155316917 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 904 186 43 0 0 chr1 41879044 41879067 -155316365 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 904 350 289 92 15 chr1 41879140 41879270 -155316162 + B1F1 SINE Alu 3 142 -7 6 904 193 29 59 0 chr1 41880786 41880820 -155314612 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 6 904 695 283 49 34 chr1 41881618 41882078 -155313354 - L1MA9 LINE L1 -165 6009 5547 6 904 225 265 0 0 chr1 41882775 41882843 -155312589 + T-rich Low_complexity Low_complexity 1 68 0 6 904 720 145 0 0 chr1 41883580 41883725 -155311707 + (TG)n Simple_repeat Simple_repeat 2 146 0 6 904 405 0 0 0 chr1 41884065 41884110 -155311322 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 6 904 2514 114 54 3 chr1 41885596 41885983 -155309449 + MTB_Mm LTR MaLR 1 407 0 6 904 21 0 0 0 chr1 41886442 41886463 -155308969 + AT_rich Low_complexity Low_complexity 1 21 0 6 904 722 241 22 18 chr1 41886753 41887005 -155308427 - L1_Mur3 LINE L1 -2083 3797 3574 6 904 189 0 0 0 chr1 41887005 41887026 -155308406 + (GA)n Simple_repeat Simple_repeat 1 21 0 6 904 263 87 0 42 chr1 41887909 41887957 -155307475 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 6 904 506 284 113 44 chr1 41888307 41888510 -155306922 + ORR1D2 LTR MaLR 15 231 -139 6 904 259 258 0 16 chr1 41888543 41888606 -155306826 + ORR1D2 LTR MaLR 311 372 -2 6 904 824 276 76 87 chr1 41888869 41889028 -155306404 - MTE2a LTR MaLR -2 377 210 6 904 450 0 0 0 chr1 41889028 41889078 -155306354 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 904 824 276 76 87 chr1 41889078 41889299 -155306133 - MTE2a LTR MaLR -170 209 1 6 904 615 316 26 0 chr1 41889534 41889689 -155305743 + RSINE1 SINE B4 3 161 -4 6 904 186 43 0 0 chr1 41889696 41889719 -155305713 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 904 978 246 0 11 chr1 41890823 41891043 -155304389 - B3 SINE B2 0 216 1 6 904 210 162 0 0 chr1 41891776 41891813 -155303619 + A-rich Low_complexity Low_complexity 1 37 0 6 904 338 107 18 0 chr1 41891889 41891945 -155303487 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 904 1620 0 0 0 chr1 41891953 41892133 -155303299 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 904 393 317 20 40 chr1 41892542 41892693 -155302739 - L3 LINE CR1 -1081 3408 3261 6 904 284 0 0 27 chr1 41893355 41893392 -155302040 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 6 904 568 210 97 0 chr1 41893451 41893627 -155301805 - L1MA4 LINE L1 -394 5906 5714 6 904 792 352 125 18 chr1 41893946 41894443 -155300989 + MLT2B3 LTR ERVL 1 550 -4 6 904 1069 306 24 50 chr1 41894616 41895170 -155300262 - Lx9 LINE L1 -249 7395 6857 6 904 333 104 21 0 chr1 41895242 41895290 -155300142 + HAL1-3A_ME LINE L1 1964 2012 -846 6 904 206 136 23 0 chr1 41895291 41895335 -155300097 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 904 620 216 0 7 chr1 41895432 41895586 -155299846 + CT-rich Low_complexity Low_complexity 3 155 0 6 904 387 0 0 0 chr1 41896230 41896273 -155299159 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 904 211 295 62 25 chr1 41896728 41896808 -155298624 - B2_Mm2 SINE B2 -110 85 3 6 904 1014 249 75 16 chr1 41897709 41898096 -155297336 + Lx8 LINE L1 903 1312 -6296 6 904 1772 167 22 0 chr1 41898099 41898416 -155297016 + ORR1A2 LTR MaLR 3 326 0 6 904 10181 160 51 5 chr1 41898421 41900292 -155295140 + ORR1A2-int LTR MaLR 6 1963 0 6 904 1845 145 25 31 chr1 41900292 41900613 -155294819 + ORR1A2 LTR MaLR 1 319 -8 6 904 405 296 72 43 chr1 41900852 41901198 -155294234 - L1MD LINE L1 -597 5762 5407 6 904 297 324 35 18 chr1 41901218 41901331 -155294101 - PB1D10 SINE Alu -2 115 1 6 904 4529 140 127 64 chr1 41901670 41902633 -155292799 + RLTR13D2 LTR ERVK 1 1023 0 6 904 248 86 0 0 chr1 41902635 41902670 -155292762 - tRNA-Lys-AAA tRNA tRNA 0 76 42 6 904 236 376 63 89 chr1 41902677 41903024 -155292408 + ORR1E LTR MaLR 22 359 0 6 904 324 345 14 21 chr1 41903050 41903192 -155292240 - L1MD LINE L1 -1001 5145 5005 6 904 1100 259 115 30 chr1 41903472 41903966 -155291466 + Lx8 LINE L1 6133 6668 -805 6 904 885 194 0 0 chr1 41904118 41904298 -155291134 + CT-rich Low_complexity Low_complexity 1 180 0 6 904 503 263 75 29 chr1 41904298 41904576 -155290856 - L1MDb LINE L1 -5251 1158 868 6 904 1768 113 24 159 chr1 41905244 41905622 -155289810 - ORR1A2 LTR MaLR 0 327 1 6 904 2530 222 29 131 chr1 41905941 41906728 -155288704 + RMER17B LTR ERVK 1 726 -232 6 904 498 70 0 95 chr1 41906728 41906823 -155288609 + L1_Mus1 LINE L1 6482 6567 0 6 904 2530 302 26 117 chr1 41906823 41907086 -155288346 + RMER17B LTR ERVK 666 881 -27 6 904 2591 118 42 0 chr1 41907122 41907502 -155287930 + MTB LTR MaLR 1 396 -4 6 904 281 255 25 68 chr1 41908840 41908958 -155286474 - MLT1A1 LTR MaLR 0 408 296 6 904 22 0 0 0 chr1 41909134 41909156 -155286276 + AT_rich Low_complexity Low_complexity 1 22 0 6 904 749 92 17 0 chr1 41910609 41910728 -155284704 + (TTTC)n Simple_repeat Simple_repeat 3 123 0 6 904 1081 97 7 0 chr1 41910750 41910895 -155284537 - B1_Mus1 SINE Alu 0 148 3 6 904 207 0 0 0 chr1 41910978 41911001 -155284431 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 904 2208 107 6 0 chr1 41911020 41911337 -155284095 - ORR1A2 LTR MaLR -8 319 1 6 904 641 141 22 22 chr1 41911350 41911627 -155283805 + (TATATG)n Simple_repeat Simple_repeat 1 277 0 6 904 334 184 11 44 chr1 41911628 41911719 -155283713 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 904 258 32 0 0 chr1 41911724 41911755 -155283677 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 904 393 22 0 0 chr1 41912195 41912241 -155283191 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 904 565 271 17 0 chr1 41912322 41912440 -155282992 + B1_Mur1 SINE Alu 22 141 -8 6 904 996 75 0 0 chr1 41912899 41913033 -155282399 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 904 331 333 148 28 chr1 41913656 41913798 -155281634 + RSINE1 SINE B4 1 159 -6 6 904 414 79 0 0 chr1 41913820 41913883 -155281549 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 6 904 369 0 0 0 chr1 41913894 41913935 -155281497 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 904 372 94 0 0 chr1 41915156 41915209 -155280223 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 904 26 50 0 0 chr1 41915391 41915431 -155280001 + AT_rich Low_complexity Low_complexity 1 40 0 6 904 398 381 33 28 chr1 41915698 41915846 -155279586 + B3A SINE B2 1 153 -45 6 904 306 0 0 0 chr1 41915846 41915880 -155279552 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 904 398 352 32 93 chr1 41915880 41915947 -155279485 + B3A SINE B2 142 202 -14 6 904 234 153 13 40 chr1 41915967 41916042 -155279390 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 6 904 2151 49 11 0 chr1 41916406 41916671 -155278761 - L1Md_F2 LINE L1 -9 6573 6306 6 904 2734 107 9 11 chr1 41916687 41917124 -155278308 - Lx3A LINE L1 -883 6098 5663 6 904 565 385 68 26 chr1 41918070 41918422 -155277010 - MLT2B3 LTR ERVL -11 543 177 6 904 277 253 141 24 chr1 41918506 41918591 -155276841 - MLT2B3 LTR ERVL -400 154 60 6 904 207 0 0 0 chr1 41918989 41919012 -155276420 + (T)n Simple_repeat Simple_repeat 1 23 0 6 904 1165 75 0 0 chr1 41919012 41919159 -155276273 - B1_Mus1 SINE Alu 0 148 2 6 904 529 310 14 38 chr1 41919214 41919425 -155276007 + B3 SINE B2 4 209 -7 6 904 1134 276 43 7 chr1 41919929 41920228 -155275204 - MTD LTR MaLR 0 419 110 6 904 1113 66 0 0 chr1 41920232 41920369 -155275063 + B1_Mm SINE Alu 1 137 -10 6 904 861 120 0 0 chr1 41920403 41920536 -155274896 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 6 904 13218 106 18 8 chr1 41920545 41923302 -155272130 + L1VL2 LINE L1 191 2983 -632 6 904 27 0 0 0 chr1 41923750 41923777 -155271655 + AT_rich Low_complexity Low_complexity 1 27 0 6 904 4446 61 0 5 chr1 41923846 41924422 -155271010 - L1Md_F2 LINE L1 -11 6571 5999 6 904 21 0 0 0 chr1 41924456 41924477 -155270955 + AT_rich Low_complexity Low_complexity 1 21 0 6 904 857 37 9 0 chr1 41924501 41924610 -155270822 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 6 904 1082 109 0 0 chr1 41924868 41925015 -155270417 - B1_Mus2 SINE Alu 0 147 1 6 904 22 0 0 0 chr1 41925019 41925041 -155270391 + AT_rich Low_complexity Low_complexity 1 22 0 6 904 635 268 36 48 chr1 41925710 41925875 -155269557 - RSINE1 SINE B4 0 165 3 6 904 2825 158 35 14 chr1 41926029 41926536 -155268896 + RLTR11A LTR ERVK 10 527 -1 6 904 519 354 74 9 chr1 41926756 41927106 -155268326 + Lx8 LINE L1 6900 7272 -201 6 904 449 326 28 21 chr1 41930050 41930191 -155265241 + B1_Mur2 SINE Alu 3 144 -5 6 904 372 306 53 18 chr1 41930658 41930771 -155264661 + MTE2a LTR MaLR 100 216 -163 6 904 491 215 131 0 chr1 41930784 41930891 -155264541 + MTE2a LTR MaLR 259 379 0 6 904 369 236 98 31 chr1 41930990 41931155 -155264277 - MER77 LTR ERVL -13 594 359 6 904 788 289 20 0 chr1 41931464 41931668 -155263764 - B3 SINE B2 -8 208 1 6 904 2457 92 19 24 chr1 41932378 41932755 -155262677 - L1_Mus2 LINE L1 -1 6565 6191 6 904 237 300 98 24 chr1 41933619 41933701 -155261731 - PB1D7 SINE Alu -5 115 28 6 904 399 246 0 17 chr1 41933693 41933790 -155261642 - B3 SINE B2 -105 93 5 6 904 387 60 0 0 chr1 41934175 41934225 -155261207 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 904 202 198 58 11 chr1 41934232 41934319 -155261113 + (TA)n Simple_repeat Simple_repeat 1 91 0 7 904 685 340 107 13 chr1 41936056 41936506 -155258926 - Lx8 LINE L1 -363 7110 6619 7 904 4355 79 7 13 chr1 41936925 41937528 -155257904 - L1Md_F2 LINE L1 -2 6580 5982 7 904 957 64 0 0 chr1 41937594 41937719 -155257713 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 7 904 5096 110 7 0 chr1 41937722 41938434 -155256998 - L1_Mus4 LINE L1 -13 6623 5907 7 904 5658 125 46 28 chr1 41938434 41939684 -155255748 - L1VL4 LINE L1 -4113 1773 405 7 904 24 32 0 0 chr1 41939735 41939766 -155255666 + AT_rich Low_complexity Low_complexity 1 31 0 7 904 453 161 0 0 chr1 41940095 41940182 -155255250 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 904 955 204 0 47 chr1 41940862 41941098 -155254334 + URR1A DNA MER1_type 1 225 -1 7 904 185 0 0 39 chr1 41941400 41941426 -155254006 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 904 480 35 0 0 chr1 41941671 41941729 -155253703 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 904 246 62 0 0 chr1 41941841 41941873 -155253559 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 905 734 50 0 10 chr1 41943452 41943552 -155251880 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 7 905 211 200 0 0 chr1 41943602 41943642 -155251790 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 7 905 249 159 0 0 chr1 41943727 41943771 -155251661 + (CAA)n Simple_repeat Simple_repeat 1 44 0 7 905 204 224 29 43 chr1 41943771 41943841 -155251591 - L2a LINE L2 -69 3357 3289 7 905 28 0 0 0 chr1 41945669 41945697 -155249735 + AT_rich Low_complexity Low_complexity 1 28 0 7 905 21 0 0 0 chr1 41947530 41947551 -155247881 + AT_rich Low_complexity Low_complexity 1 21 0 7 905 204 125 0 0 chr1 41948993 41949025 -155246407 + (A)n Simple_repeat Simple_repeat 1 32 0 7 905 745 200 7 14 chr1 41952401 41952548 -155242884 - B1_Mur3 SINE Alu -1 148 3 7 905 23 33 0 0 chr1 41954598 41954628 -155240804 + AT_rich Low_complexity Low_complexity 1 30 0 7 905 1303 259 68 100 chr1 41956167 41956874 -155238558 - L1MA7 LINE L1 -12 6279 5596 7 905 199 87 21 42 chr1 41958109 41958157 -155237275 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 7 905 820 281 5 0 chr1 41958164 41958367 -155237065 - B3 SINE B2 -12 204 1 7 905 225 204 115 0 chr1 41960332 41960445 -155234987 + (CTATA)n Simple_repeat Simple_repeat 3 128 0 7 905 599 268 48 45 chr1 41960679 41960845 -155234587 + B3 SINE B2 4 173 -25 7 905 441 36 0 0 chr1 41960845 41960900 -155234532 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 905 758 279 169 17 chr1 41961698 41962172 -155233260 + Charlie2b DNA MER1_type 2220 2765 -17 7 905 220 341 91 9 chr1 41963841 41964051 -155231381 - MIRb SINE MIR -6 262 36 7 905 222 345 23 0 chr1 41964267 41964354 -155231078 + B4 SINE B4 2 90 -202 7 905 448 287 0 15 chr1 41964369 41964500 -155230932 + B1F2 SINE Alu 3 131 -18 7 905 372 312 0 0 chr1 41966060 41966153 -155229279 + B1F SINE Alu 20 112 -37 7 905 215 224 39 13 chr1 41967570 41967647 -155227785 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 7 905 880 139 29 4 chr1 41967802 41968081 -155227351 + (TAGA)n Simple_repeat Simple_repeat 1 285 0 7 905 668 141 17 6 chr1 41968081 41968259 -155227173 + GA-rich Low_complexity Low_complexity 1 180 0 7 905 847 91 28 39 chr1 41968296 41968478 -155226954 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 905 423 68 0 0 chr1 41969898 41969957 -155225475 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 905 21 36 0 0 chr1 41970469 41970497 -155224935 + AT_rich Low_complexity Low_complexity 1 28 0 7 905 364 210 0 29 chr1 41971076 41971179 -155224253 + CT-rich Low_complexity Low_complexity 3 102 0 7 905 6321 71 7 1 chr1 41971437 41972284 -155223148 - L1_Mus3 LINE L1 -3 6635 5784 7 905 424 284 84 59 chr1 41972880 41973119 -155222313 + MER121 Unknown Unknown 93 337 -75 7 905 464 302 41 0 chr1 41974757 41974773 -155220659 + L1Md_F2 LINE L1 6361 6378 -619 7 905 1306 56 0 11 chr1 41974773 41974953 -155220479 - L1Md_F2 LINE L1 -12 6570 6393 7 905 1217 56 15 0 chr1 41974953 41975108 -155220324 + L1Md_F2 LINE L1 6039 6186 -396 7 905 435 38 0 0 chr1 41976544 41976597 -155218835 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 905 351 0 0 0 chr1 41976597 41976635 -155218797 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 905 318 271 29 0 chr1 41978116 41978186 -155217246 - PB1D10 SINE Alu -1 116 45 7 905 21 0 0 0 chr1 41978603 41978624 -155216808 + AT_rich Low_complexity Low_complexity 1 21 0 7 905 219 312 44 44 chr1 41979657 41979771 -155215661 + PB1D7 SINE Alu 7 120 0 7 905 321 68 0 0 chr1 41979817 41979861 -155215571 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 905 337 339 36 36 chr1 41979880 41980128 -155215304 + L1MB4 LINE L1 1113 1360 -5182 7 905 339 203 29 0 chr1 41980205 41980274 -155215158 + Lx4B LINE L1 6416 6486 -572 7 905 714 273 24 14 chr1 41980355 41980563 -155214869 + B3 SINE B2 1 210 -6 7 905 468 309 93 28 chr1 41980728 41981124 -155214308 + L1MB4 LINE L1 1729 2150 -4496 7 905 293 296 62 7 chr1 41981320 41981466 -155213966 + L1MB4 LINE L1 2524 2677 -3969 7 905 356 320 21 84 chr1 41981485 41981676 -155213756 + B3A SINE B2 1 179 -19 7 905 668 315 105 22 chr1 41981745 41982515 -155212917 + L1MB4 LINE L1 2672 3505 -3139 7 905 306 161 31 31 chr1 41982551 41982615 -155212817 + B1_Mur1 SINE Alu 81 144 -5 7 905 303 347 69 28 chr1 41982624 41982944 -155212488 + L1MB4 LINE L1 4332 4664 -1980 7 905 186 133 0 0 chr1 41983161 41983191 -155212241 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 7 905 388 319 42 49 chr1 41983192 41983479 -155211953 + L1MB4 LINE L1 5155 5439 -1199 7 905 2346 259 60 28 chr1 41983507 41983894 -155211538 + Lx7 LINE L1 6941 7327 -369 7 905 306 0 0 0 chr1 41983894 41983928 -155211504 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 905 2346 259 60 28 chr1 41983928 41983958 -155211474 + Lx7 LINE L1 7328 7354 -342 7 905 429 70 0 0 chr1 41983958 41984015 -155211417 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 7 905 2346 259 59 28 chr1 41984015 41984340 -155211092 + Lx7 LINE L1 7311 7692 -4 7 905 438 217 76 122 chr1 41984366 41984497 -155210935 + RSINE1 SINE B4 5 129 -36 7 905 450 114 0 0 chr1 41984853 41984923 -155210509 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 7 905 242 292 162 9 chr1 41984943 41985046 -155210386 + L1MB4 LINE L1 5794 5926 -755 7 905 293 0 27 0 chr1 41985046 41985083 -155210349 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 7 905 242 292 162 9 chr1 41985083 41985207 -155210225 + L1MB4 LINE L1 5927 6055 -626 7 905 460 299 69 30 chr1 41985286 41985489 -155209943 + B3 SINE B2 5 215 -1 7 905 786 311 26 36 chr1 41985559 41985979 -155209453 + L1MB4 LINE L1 6222 6637 -41 7 905 781 304 67 26 chr1 41985996 41986266 -155209166 + B4 SINE B4 4 284 -8 7 905 207 100 0 0 chr1 41986266 41986296 -155209136 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 7 905 353 309 102 53 chr1 41986603 41986644 -155208788 + L1MD LINE L1 3904 3942 -2204 7 905 752 327 98 38 chr1 41986644 41987143 -155208289 - MT2A LTR ERVL 0 533 5 7 905 353 309 102 53 chr1 41987143 41987385 -155208047 + L1MD LINE L1 3943 4201 -1945 7 905 277 213 56 14 chr1 41987400 41987543 -155207889 + (TA)n Simple_repeat Simple_repeat 1 149 0 7 905 6974 102 8 0 chr1 41987595 41988615 -155206817 + L1_Mus2 LINE L1 5537 6564 -2 7 905 360 284 178 43 chr1 41988655 41989116 -155206316 + L1M5 LINE L1 4345 4867 -1279 7 905 1734 326 43 23 chr1 41989162 41990108 -155205324 + Lx8 LINE L1 6140 7112 -584 7 905 489 199 30 6 chr1 41990156 41990323 -155205109 + GA-rich Low_complexity Low_complexity 2 172 0 7 905 399 155 0 12 chr1 41990564 41990649 -155204783 + L1Md_F2 LINE L1 6499 6582 0 7 905 276 53 0 0 chr1 41990659 41990697 -155204735 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 905 225 0 0 0 chr1 41990697 41990722 -155204710 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 905 25 0 0 0 chr1 41991091 41991116 -155204316 + AT_rich Low_complexity Low_complexity 1 25 0 7 905 341 191 14 71 chr1 41991197 41991338 -155204094 + (TTTG)n Simple_repeat Simple_repeat 3 135 0 7 905 294 158 193 0 chr1 41991344 41991401 -155204031 - B1_Mur4 SINE Alu -5 145 78 7 905 216 97 0 0 chr1 41991428 41991459 -155203973 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 905 1785 143 55 10 chr1 41991476 41991786 -155203646 - Lx2 LINE L1 -6 6991 6668 7 905 339 44 0 0 chr1 41992437 41992482 -155202950 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 905 22 56 0 0 chr1 41993516 41993552 -155201880 + AT_rich Low_complexity Low_complexity 1 36 0 7 905 183 80 0 0 chr1 41996009 41996034 -155199398 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 905 578 82 10 0 chr1 41996238 41996336 -155199096 + (ATATG)n Simple_repeat Simple_repeat 1 99 0 7 905 940 228 24 5 chr1 41996719 41996931 -155198501 + RLTR15 LTR ERVK 1 216 -143 7 905 205 120 0 74 chr1 41996970 41997009 -155198423 + T-rich Low_complexity Low_complexity 15 50 0 7 905 198 0 0 0 chr1 41997009 41997031 -155198401 + (TGG)n Simple_repeat Simple_repeat 1 22 0 7 905 205 120 0 74 chr1 41997031 41997045 -155198387 + T-rich Low_complexity Low_complexity 1 14 0 7 905 207 0 0 0 chr1 41997046 41997069 -155198363 + (T)n Simple_repeat Simple_repeat 1 23 0 7 905 2226 186 110 45 chr1 41997125 41997403 -155198029 + RMER6D LTR ERVK 1 313 -407 7 905 7248 45 12 22 chr1 41997403 41998330 -155197102 + L1Md_F2 LINE L1 5653 6570 -12 7 905 2226 186 110 45 chr1 41998330 41998579 -155196853 + RMER6D LTR ERVK 314 562 -158 7 905 236 154 19 0 chr1 41998590 41998642 -155196790 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 905 2497 170 12 73 chr1 41998642 41999149 -155196283 + RLTR19A LTR ERVK 19 494 -2 7 905 806 219 0 0 chr1 41999150 41999314 -155196118 + RMER6D LTR ERVK 557 720 0 7 905 329 146 0 0 chr1 41999316 41999364 -155196068 - tRNA-Lys-AAG tRNA tRNA 0 76 29 7 905 24 53 0 0 chr1 41999678 41999716 -155195716 + AT_rich Low_complexity Low_complexity 1 38 0 7 905 280 267 56 49 chr1 41999728 41999870 -155195562 - Lx7 LINE L1 0 7696 7554 7 905 205 133 44 0 chr1 41999874 41999933 -155195499 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 7 905 3094 255 70 14 chr1 42000003 42000865 -155194567 - Lx7 LINE L1 -369 7327 6418 1 905 1796 327 52 45 chr1 42001699 42002672 -155192760 + Lx8 LINE L1 6419 7398 -75 2 905 414 0 0 0 chr1 42002879 42002925 -155192507 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 905 206 211 51 26 chr1 42002968 42003124 -155192308 + (CATATA)n Simple_repeat Simple_repeat 2 161 0 4 905 1746 262 91 18 chr1 42003200 42003995 -155191437 - L1MC LINE L1 -2475 3671 2819 5 905 225 333 12 12 chr1 42004067 42004149 -155191283 - ID2 SINE ID 0 83 2 6 905 314 216 40 0 chr1 42004170 42004244 -155191188 + B3 SINE B2 2 78 -138 7 905 1395 297 47 39 chr1 42004245 42004803 -155190629 - Lx8 LINE L1 -71 7402 6841 8 905 2375 37 17 7 chr1 42004803 42005101 -155190331 + L1Md_F3 LINE L1 6282 6582 -2 9 905 284 245 193 28 chr1 42005616 42005725 -155189707 - L1_Mur3 LINE L1 -14 5866 5740 1 905 257 221 21 43 chr1 42005793 42005899 -155189533 - L1M5 LINE L1 -851 5449 5347 1 905 300 299 94 21 chr1 42005956 42006147 -155189285 - L1M5 LINE L1 -705 5459 5255 1 905 610 91 20 0 chr1 42006154 42006253 -155189179 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 905 1948 140 135 11 chr1 42006525 42006887 -155188545 + MTB_Mm LTR MaLR 1 407 0 1 905 345 47 0 0 chr1 42007199 42007242 -155188190 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 905 262 283 0 0 chr1 42007252 42007312 -155188120 + A-rich Low_complexity Low_complexity 4 63 0 1 905 680 273 59 16 chr1 42007980 42008166 -155187266 - ID_B1 SINE B4 -2 222 29 1 905 186 43 0 0 chr1 42008169 42008192 -155187240 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 905 14713 79 66 3 chr1 42008195 42009973 -155185459 - L1_Mus2 LINE L1 0 6566 4671 1 905 264 30 0 0 chr1 42009973 42010006 -155185426 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 905 14713 100 12 1 chr1 42010006 42011024 -155184408 - L1_Mus2 LINE L1 -1213 4670 3645 1 905 522 217 0 0 chr1 42011767 42011928 -155183504 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 905 373 311 148 18 chr1 42012084 42012415 -155183017 - L1M4 LINE L1 -464 5720 5347 2 905 254 193 18 0 chr1 42013237 42013294 -155182138 + ID2 SINE ID 2 59 -24 2 905 798 266 5 11 chr1 42013983 42014169 -155181263 - B3A SINE B2 -13 185 1 2 905 515 319 63 57 chr1 42014248 42014900 -155180532 - L1MD1 LINE L1 -262 5980 5325 2 905 472 305 21 34 chr1 42014880 42015159 -155180273 - L1MD1 LINE L1 -773 5373 5101 2 905 408 40 0 0 chr1 42015197 42015247 -155180185 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 2 905 1197 96 0 0 chr1 42015248 42015426 -155180006 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 905 539 247 50 62 chr1 42016295 42016455 -155178977 + RSINE1 SINE B4 8 165 0 2 905 684 208 0 0 chr1 42016471 42016702 -155178730 + (CA)n Simple_repeat Simple_repeat 1 231 0 2 905 213 132 0 0 chr1 42016722 42016760 -155178672 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 905 911 260 0 14 chr1 42017914 42018121 -155177311 + B3 SINE B2 9 212 -4 3 905 237 203 79 86 chr1 42018946 42019041 -155176391 - L1MA6 LINE L1 -18 6282 6187 3 905 1131 198 207 19 chr1 42019041 42019350 -155176082 + ORR1B2 LTR MaLR 1 367 0 3 905 237 203 79 86 chr1 42019350 42019394 -155176038 - L1MA6 LINE L1 -114 6186 6144 3 905 4294 175 46 29 chr1 42019397 42020369 -155175063 + RMER12 LTR ERVK 1 1522 -50 3 905 983 158 133 0 chr1 42020954 42021150 -155174282 + URR1A DNA MER1_type 5 226 0 3 905 238 290 84 35 chr1 42021184 42021327 -155174105 - Kanga1a DNA Tc2 -29 725 576 3 905 245 27 54 0 chr1 42022329 42022366 -155173066 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 905 779 233 64 60 chr1 42022585 42022836 -155172596 + MER96B DNA hAT 149 400 -17 3 905 250 338 44 94 chr1 42024036 42024196 -155171236 + Tigger7 DNA MER2_type 22 173 -2318 3 905 1432 251 99 22 chr1 42024295 42024830 -155170602 + Tigger7 DNA MER2_type 326 901 -1590 3 905 526 249 11 82 chr1 42024881 42025065 -155170367 + Tigger7 DNA MER2_type 2295 2465 -26 3 905 393 39 0 0 chr1 42026597 42026648 -155168784 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 905 333 217 0 0 chr1 42026648 42026731 -155168701 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 905 680 296 101 22 chr1 42026938 42027265 -155168167 + ORR1E LTR MaLR 13 370 0 4 905 555 292 75 13 chr1 42027488 42027793 -155167639 + L1MC3 LINE L1 7445 7768 -17 4 905 280 98 28 47 chr1 42028044 42028151 -155167281 + A-rich Low_complexity Low_complexity 2 106 0 4 905 421 283 14 48 chr1 42028322 42028467 -155166965 - ORR1D2 LTR MaLR -2 368 229 4 905 822 130 0 0 chr1 42028756 42028887 -155166545 + (TCC)n Simple_repeat Simple_repeat 3 133 0 4 905 452 314 33 0 chr1 42030086 42030239 -155165193 - RSINE1 SINE B4 -7 158 1 4 905 821 45 27 0 chr1 42030334 42030446 -155164986 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 4 905 274 265 103 26 chr1 42030502 42030657 -155164775 - L1MD LINE L1 -2278 3868 3702 4 905 265 302 77 8 chr1 42030739 42030856 -155164576 - L1M4 LINE L1 -2503 3643 3519 4 905 315 0 0 0 chr1 42030873 42030908 -155164524 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 905 1797 330 53 116 chr1 42031066 42032059 -155163373 + MTE-int LTR MaLR 546 1476 -104 5 905 2197 199 104 10 chr1 42032071 42032579 -155162853 + RMER4B LTR ERVK 18 573 -12 5 905 386 20 20 0 chr1 42032812 42032863 -155162569 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5 905 7902 60 0 0 chr1 42033559 42034538 -155160894 - L1_Mus1 LINE L1 -1 6566 5588 5 905 287 261 4 0 chr1 42034675 42034923 -155160509 + (TG)n Simple_repeat Simple_repeat 1 249 0 5 905 180 158 0 0 chr1 42034935 42034973 -155160459 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 905 665 24 12 0 chr1 42035084 42035167 -155160265 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 905 307 311 0 10 chr1 42036267 42036371 -155159061 + CT-rich Low_complexity Low_complexity 2 104 0 5 905 327 52 17 33 chr1 42040250 42040310 -155155122 + (TTG)n Simple_repeat Simple_repeat 2 60 0 5 905 650 237 142 15 chr1 42040642 42040723 -155154709 + RMER1B Other Other 845 950 -116 5 905 249 33 0 0 chr1 42040723 42040753 -155154679 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 905 650 237 142 15 chr1 42040753 42040868 -155154564 + RMER1B Other Other 951 1066 0 5 905 231 88 0 0 chr1 42041976 42042010 -155153422 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 905 321 148 91 18 chr1 42042010 42042065 -155153367 - ID4 SINE ID -11 72 14 6 905 502 264 29 0 chr1 42042095 42042235 -155153197 + L1MA6 LINE L1 6150 6293 -7 6 905 230 350 23 47 chr1 42042418 42042547 -155152885 - MTEa LTR MaLR 0 379 254 6 905 207 100 0 0 chr1 42042851 42042881 -155152551 + (A)n Simple_repeat Simple_repeat 1 30 0 6 905 344 241 22 22 chr1 42042990 42043085 -155152347 + PB1D10 SINE Alu 10 104 -45 6 905 714 160 0 0 chr1 42043148 42043279 -155152153 + (TA)n Simple_repeat Simple_repeat 1 131 0 6 905 329 255 7 0 chr1 42043296 42043437 -155151995 + (TA)n Simple_repeat Simple_repeat 2 143 0 6 905 667 274 33 44 chr1 42043437 42043620 -155151812 + B3A SINE B2 13 193 -5 6 905 401 279 127 42 chr1 42044205 42044489 -155150943 + L1MDa LINE L1 1036 1343 -5290 6 905 695 268 65 10 chr1 42045299 42045499 -155149933 + B3 SINE B2 2 212 -4 7 905 281 343 76 8 chr1 42045992 42046230 -155149202 + L1MDa LINE L1 5471 5724 -813 6 905 441 338 109 49 chr1 42046327 42046759 -155148673 - L1MD2 LINE L1 -496 5863 5406 7 905 400 323 72 0 chr1 42046846 42047013 -155148419 + Lx9 LINE L1 7224 7402 -242 7 905 450 0 0 0 chr1 42047055 42047105 -155148327 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 905 373 110 0 24 chr1 42047132 42047216 -155148216 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 905 5561 86 23 3 chr1 42047229 42048010 -155147422 - L1_Mus3 LINE L1 -8 6630 5834 7 905 1569 66 19 3 chr1 42048010 42048243 -155147189 + L1_Mus3 LINE L1 5594 5832 -1226 7 905 1303 88 16 0 chr1 42048345 42048527 -155146905 + B2_Mm2 SINE B2 2 186 -9 7 905 739 327 58 23 chr1 42049069 42049326 -155146106 + B4A SINE B4 17 282 -10 7 905 225 254 30 0 chr1 42049335 42049402 -155146030 + GA-rich Low_complexity Low_complexity 2 70 0 7 905 2905 84 23 0 chr1 42049421 42049812 -155145620 + MTB LTR MaLR 1 400 0 7 905 943 87 35 42 chr1 42050054 42050198 -155145234 + B1_Mm SINE Alu 4 146 -1 8 905 504 171 0 0 chr1 42050399 42050510 -155144922 + (TG)n Simple_repeat Simple_repeat 2 112 0 8 905 392 282 65 32 chr1 42051943 42052097 -155143335 + B3A SINE B2 34 192 -6 8 905 558 169 0 0 chr1 42052415 42052533 -155142899 + (TA)n Simple_repeat Simple_repeat 2 119 0 8 905 2484 238 36 6 chr1 42052706 42053231 -155142201 + Lx6 LINE L1 6918 7458 -2 8 905 21 0 0 0 chr1 42053284 42053305 -155142127 + AT_rich Low_complexity Low_complexity 1 21 0 8 905 232 331 16 32 chr1 42055606 42055703 -155139729 - RMER12 LTR ERVK -471 851 758 8 905 456 51 0 0 chr1 42055703 42055762 -155139670 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 905 232 331 16 32 chr1 42055762 42055789 -155139643 - RMER12 LTR ERVK -565 757 729 8 905 257 305 105 50 chr1 42055943 42056181 -155139251 + L1MCb LINE L1 245 495 -6256 8 905 414 0 0 0 chr1 42056385 42056431 -155139001 + (CAA)n Simple_repeat Simple_repeat 2 47 0 8 905 314 331 69 8 chr1 42056657 42056904 -155138528 + L1MCb LINE L1 713 974 -5071 8 905 271 0 25 25 chr1 42058379 42058419 -155137013 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 9 905 441 185 37 0 chr1 42059197 42059305 -155136127 - Lx9 LINE L1 -10 7634 7523 9 905 555 74 0 0 chr1 42059305 42059386 -155136046 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 905 1633 171 208 3 chr1 42059388 42059735 -155135697 + MTC LTR MaLR 3 420 -1 9 905 1083 192 105 4 chr1 42059737 42060014 -155135418 - Lx9 LINE L1 -153 7491 7187 9 905 6241 88 25 38 chr1 42060612 42061553 -155133879 - RLTR13B3 LTR ERVK 0 929 1 9 905 325 93 0 0 chr1 42061579 42061622 -155133810 + HAL1-3A_ME LINE L1 1975 2017 -841 9 905 226 387 78 62 chr1 42061760 42061953 -155133479 - B4 SINE B4 0 292 97 9 905 303 233 0 0 chr1 42061953 42062013 -155133419 + RMER15 LTR ERVL 1 60 -515 9 905 921 160 28 155 chr1 42062033 42062285 -155133147 + URR1B DNA MER1_type 5 224 -1 9 905 2369 228 3 76 chr1 42062302 42062882 -155132550 + RMER15 LTR ERVL 38 575 0 9 905 510 176 21 4 chr1 42062882 42062985 -155132447 - B4A SINE B4 -191 101 1 9 905 249 139 0 0 chr1 42063039 42063082 -155132350 + (T)n Simple_repeat Simple_repeat 1 43 0 1 905 381 43 0 0 chr1 42064189 42064236 -155131196 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 905 265 0 75 0 chr1 42064301 42064341 -155131091 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 905 397 331 66 7 chr1 42064505 42064657 -155130775 + MLT1A0 LTR MaLR 1 161 -204 1 905 288 318 37 29 chr1 42064670 42064806 -155130626 - MLT1A1 LTR MaLR 0 408 272 1 905 3069 191 73 10 chr1 42064830 42065450 -155129982 + RMER19B LTR ERVK 244 902 0 1 905 263 208 18 70 chr1 42067939 42068016 -155127416 - MTE2a LTR MaLR -17 402 278 1 905 21 0 0 0 chr1 42068350 42068371 -155127061 + AT_rich Low_complexity Low_complexity 1 21 0 1 905 393 332 42 24 chr1 42068732 42069065 -155126367 + MER58B DNA MER1_type 3 341 0 1 905 902 81 29 11 chr1 42070688 42070862 -155124570 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 1 905 10298 18 0 0 chr1 42070883 42072119 -155123313 + L1Md_A LINE L1 4351 5586 -297 1 905 8606 26 0 0 chr1 42072119 42073114 -155122318 + L1Md_A LINE L1 5587 6581 -1 1 905 273 140 64 11 chr1 42073138 42073232 -155122200 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 1 113 7086 98 0 21 chr1 42073581 42074769 -155120663 - L1_Mus4 LINE L1 -1 6635 5471 1 906 1326 78 0 0 chr1 42075313 42075493 -155119939 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 906 309 155 0 0 chr1 42075493 42075551 -155119881 + CT-rich Low_complexity Low_complexity 3 60 0 1 906 28 79 0 0 chr1 42076910 42076973 -155118459 + AT_rich Low_complexity Low_complexity 1 63 0 1 906 351 89 0 0 chr1 42077559 42077615 -155117817 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 906 1167 263 96 92 chr1 42077617 42078056 -155117376 + RLTR11A LTR ERVK 8 446 -82 1 906 1496 23 0 4 chr1 42078056 42078319 -155117113 + (TG)n Simple_repeat Simple_repeat 1 262 0 1 906 1167 263 96 92 chr1 42078319 42078394 -155117038 + RLTR11A LTR ERVK 447 525 -3 1 906 329 145 16 0 chr1 42078484 42078546 -155116886 + GA-rich Low_complexity Low_complexity 4 66 0 1 906 583 358 18 49 chr1 42078547 42078773 -155116659 - MLT2B2 LTR ERVL -44 471 253 1 906 379 316 49 25 chr1 42078812 42078974 -155116458 - MLT2B2 LTR ERVL -336 179 14 1 906 3441 153 79 16 chr1 42079103 42079648 -155115784 - Lx5 LINE L1 -603 6447 5859 1 906 2431 109 114 0 chr1 42079648 42080025 -155115407 + RLTR9B2 LTR ERVK 1 420 0 1 906 3441 153 79 16 chr1 42080025 42080174 -155115258 - Lx5 LINE L1 -1192 5858 5709 1 906 1073 162 22 0 chr1 42080171 42080356 -155115076 + Lx5 LINE L1 6404 6592 -458 1 906 891 179 66 144 chr1 42080354 42080673 -155114759 + Lx5 LINE L1 6754 7047 -3 1 906 387 0 0 0 chr1 42081144 42081187 -155114245 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 906 3624 60 2 0 chr1 42081513 42081965 -155113467 + L1_Mus2 LINE L1 6113 6565 -1 1 906 565 305 0 8 chr1 42084309 42084441 -155110991 - RSINE1 SINE B4 0 165 35 1 906 361 340 42 112 chr1 42084613 42084898 -155110534 + B4A SINE B4 26 290 -2 1 906 279 54 0 0 chr1 42084903 42084940 -155110492 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 906 288 120 0 0 chr1 42085884 42085934 -155109498 + (T)n Simple_repeat Simple_repeat 1 50 0 1 906 1142 68 0 26 chr1 42085993 42086145 -155109287 - B1_Mus1 SINE Alu 0 148 1 1 906 283 349 144 11 chr1 42086657 42086831 -155108601 + MER20 DNA MER1_type 23 219 0 1 906 442 261 0 0 chr1 42087075 42087163 -155108269 + RSINE1 SINE B4 2 89 -76 1 906 260 263 99 88 chr1 42087163 42087267 -155108165 + B2_Mm2 SINE B2 1 194 -1 1 906 7312 46 0 1 chr1 42087494 42088385 -155107047 + L1Md_F2 LINE L1 5691 6580 -2 1 906 292 292 33 22 chr1 42088616 42088707 -155106725 - MTEb LTR MaLR -16 363 272 1 906 514 361 31 28 chr1 42088842 42089130 -155106302 + B4A SINE B4 2 290 -2 1 906 897 157 129 20 chr1 42089609 42089811 -155105621 - URR1A DNA MER1_type 0 226 3 1 906 1433 45 0 0 chr1 42091114 42091292 -155104140 + MTB LTR MaLR 169 346 -54 1 906 499 247 27 91 chr1 42092063 42092142 -155103290 + MT2B LTR ERVL 88 259 -339 1 906 827 57 0 0 chr1 42092142 42092247 -155103185 + B1_Mm SINE Alu 1 105 -42 1 906 373 250 20 1 chr1 42092922 42093047 -155102385 - L1MA5 LINE L1 -63 6234 6105 1 906 233 278 54 22 chr1 42093363 42093455 -155101977 - Lx9 LINE L1 -1182 6462 6368 1 906 637 279 128 21 chr1 42093502 42093887 -155101545 - Lx9 LINE L1 -1540 6156 5743 1 906 549 0 0 0 chr1 42093899 42093960 -155101472 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 906 28 48 0 0 chr1 42094413 42094455 -155100977 + AT_rich Low_complexity Low_complexity 1 42 0 1 906 364 366 71 64 chr1 42094546 42094984 -155100448 + LTR82B Low_complexity ERVL 136 576 -254 1 906 491 239 42 66 chr1 42095089 42095255 -155100177 + RSINE1 SINE B4 4 165 0 1 906 210 26 0 141 chr1 42095373 42095508 -155099924 + (GTTTG)n Simple_repeat Simple_repeat 4 119 0 1 906 380 37 19 0 chr1 42095512 42095566 -155099866 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 1 906 490 304 18 31 chr1 42095748 42095911 -155099521 - B3A SINE B2 0 198 38 1 906 225 226 109 73 chr1 42096059 42096169 -155099263 - L1M3 LINE L1 -2600 3543 3430 1 906 544 295 37 65 chr1 42096468 42096823 -155098609 - L1M3 LINE L1 -3108 3032 2688 1 906 215 238 0 0 chr1 42097177 42097219 -155098213 - PB1D7 SINE Alu -60 60 19 1 906 306 346 30 18 chr1 42097234 42097399 -155098033 + MLT2B4 LTR ERVL 315 481 -75 1 906 254 265 59 0 chr1 42097666 42097734 -155097698 - ID4 SINE ID -10 73 2 1 906 24 32 0 0 chr1 42097805 42097836 -155097596 + AT_rich Low_complexity Low_complexity 1 31 0 1 906 550 259 105 24 chr1 42097853 42098063 -155097369 - MTEa LTR MaLR 0 379 153 1 906 549 0 0 0 chr1 42098654 42098715 -155096717 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 906 333 0 0 0 chr1 42098715 42098751 -155096681 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 906 575 286 59 31 chr1 42098814 42099070 -155096362 - L1MEc LINE L1 -6099 301 39 1 906 219 286 0 0 chr1 42099983 42100039 -155095393 + L2a LINE L2 3371 3426 0 1 906 21 36 0 0 chr1 42100170 42100198 -155095234 + AT_rich Low_complexity Low_complexity 1 28 0 1 906 561 105 0 0 chr1 42100319 42100405 -155095027 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 906 1446 75 16 0 chr1 42100480 42100667 -155094765 - B2_Mm2 SINE B2 -5 190 1 1 906 240 238 0 77 chr1 42100889 42100980 -155094452 + GA-rich Low_complexity Low_complexity 2 85 0 1 906 502 342 35 25 chr1 42101240 42101441 -155093991 + B4A SINE B4 2 204 -88 1 906 1126 215 87 121 chr1 42102391 42102772 -155092660 - ORR1D1 LTR MaLR 0 374 7 1 906 23 33 0 0 chr1 42103495 42103525 -155091907 + AT_rich Low_complexity Low_complexity 1 30 0 1 906 806 247 80 58 chr1 42103708 42103983 -155091449 + B4A SINE B4 2 282 -10 1 906 234 0 0 0 chr1 42104007 42104033 -155091399 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 906 697 272 33 19 chr1 42104168 42104378 -155091054 - B3 SINE B2 -3 213 1 1 906 1541 276 14 30 chr1 42104853 42105184 -155090248 - MTD LTR MaLR 0 419 90 1 906 228 67 0 0 chr1 42105184 42105214 -155090218 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 906 1228 62 5 32 chr1 42105214 42105399 -155090033 - L1_Mus4 LINE L1 -17 6619 6440 1 906 1541 276 14 30 chr1 42105399 42105492 -155089940 - MTD LTR MaLR -330 89 2 1 906 1463 335 43 20 chr1 42105635 42106336 -155089096 - Lx8 LINE L1 -498 6975 6259 1 906 725 296 29 20 chr1 42106579 42106924 -155088508 - Lx8 LINE L1 -1794 5902 5547 1 906 6358 285 67 60 chr1 42106926 42110964 -155084468 - Lx8 LINE L1 -596 5284 1219 1 906 2628 177 62 4 chr1 42114629 42115145 -155080287 - Lx3C LINE L1 -4 6972 6427 1 906 1144 257 44 35 chr1 42115194 42115561 -155079871 - ORR1D2 LTR MaLR 0 370 1 1 906 718 282 44 85 chr1 42117879 42118407 -155077025 - L1MA6 LINE L1 -106 6194 5689 1 906 351 301 9 0 chr1 42118422 42118535 -155076897 + L1M2 LINE L1 5488 5601 -696 1 906 22 35 0 0 chr1 42119257 42119286 -155076146 + AT_rich Low_complexity Low_complexity 1 29 0 1 906 350 305 42 53 chr1 42119387 42119671 -155075761 - CR1_Mam LINE CR1 -350 1854 1574 1 906 192 179 0 0 chr1 42119693 42119732 -155075700 + T-rich Low_complexity Low_complexity 1 39 0 1 906 242 236 0 0 chr1 42122434 42122489 -155072943 + T-rich Low_complexity Low_complexity 1 55 0 1 906 909 255 29 0 chr1 42122568 42122776 -155072656 - B3 SINE B2 0 216 3 1 906 23 33 0 0 chr1 42124739 42124769 -155070663 + AT_rich Low_complexity Low_complexity 1 30 0 1 906 21 0 0 0 chr1 42125087 42125108 -155070324 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 371 252 0 0 chr1 42125328 42125435 -155069997 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 1 906 222 186 139 0 chr1 42125522 42125565 -155069867 - B3 SINE B2 -163 53 5 1 906 23 78 0 0 chr1 42125647 42125698 -155069734 + AT_rich Low_complexity Low_complexity 1 51 0 1 906 24 0 0 0 chr1 42127553 42127577 -155067855 + AT_rich Low_complexity Low_complexity 1 24 0 1 906 7371 88 8 4 chr1 42127664 42128761 -155066671 - Lx LINE L1 -4 6650 5557 1 906 417 39 0 0 chr1 42129599 42129650 -155065782 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 906 198 0 0 0 chr1 42130231 42130253 -155065179 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 906 858 197 0 0 chr1 42130888 42131035 -155064397 + B1_Mus1 SINE Alu 2 148 0 1 906 661 131 39 19 chr1 42131954 42132110 -155063322 + (CATATA)n Simple_repeat Simple_repeat 1 159 0 1 906 768 296 0 0 chr1 42132444 42132623 -155062809 + B3 SINE B2 26 204 -12 1 906 303 284 195 17 chr1 42133328 42133446 -155061986 - MER5B DNA MER1_type -11 167 29 1 906 2633 183 51 29 chr1 42134161 42134707 -155060725 + RLTR20B2 LTR ERVK 3 560 0 1 906 2206 102 0 58 chr1 42135032 42135374 -155060058 - ORR1A3 LTR MaLR -4 322 1 1 906 458 322 31 62 chr1 42135610 42135805 -155059627 - B3A SINE B2 -1 197 9 1 906 225 0 0 0 chr1 42136714 42136739 -155058693 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 906 3609 71 20 4 chr1 42136934 42137428 -155058004 - L1Md_F2 LINE L1 -12 6570 6069 2 906 625 49 0 0 chr1 42137428 42137510 -155057922 + L1Md_F2 LINE L1 5995 6076 -506 2 906 4797 135 73 19 chr1 42137911 42138741 -155056691 + Lx3C LINE L1 6095 6969 -7 2 906 678 85 0 0 chr1 42138778 42138872 -155056560 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 2 906 180 313 47 24 chr1 42141843 42141928 -155053504 + L2a LINE L2 3340 3426 0 2 906 312 224 94 0 chr1 42142416 42142501 -155052931 + PB1D10 SINE Alu 25 117 0 2 906 327 146 0 0 chr1 42142521 42142576 -155052856 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 2 906 201 74 0 0 chr1 42142573 42142600 -155052832 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 906 2153 169 79 8 chr1 42144796 42145189 -155050243 - MTC LTR MaLR 0 421 1 2 906 22 35 0 0 chr1 42145641 42145670 -155049762 + AT_rich Low_complexity Low_complexity 1 29 0 2 906 378 334 51 89 chr1 42146406 42146471 -155048961 + MLT1C LTR MaLR 110 172 -295 2 906 5156 48 0 0 chr1 42146471 42147097 -155048335 + L1Md_F2 LINE L1 5957 6582 0 2 906 378 334 51 89 chr1 42147097 42147361 -155048071 + MLT1C LTR MaLR 173 427 -40 2 906 207 0 0 0 chr1 42147361 42147384 -155048048 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 906 378 334 51 89 chr1 42147384 42147424 -155048008 + MLT1C LTR MaLR 428 466 -1 2 906 21 0 0 0 chr1 42147862 42147883 -155047549 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 1671 179 66 9 chr1 42149078 42149428 -155046004 + ORR1D1 LTR MaLR 3 372 -2 2 906 411 274 110 79 chr1 42150509 42150809 -155044623 + B4 SINE B4 2 281 -11 2 906 219 69 0 0 chr1 42150843 42150872 -155044560 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 906 227 319 33 0 chr1 42151233 42151324 -155044108 - LTR33 LTR ERVL -4 511 418 2 906 948 220 62 6 chr1 42151836 42152084 -155043348 - MTD LTR MaLR -118 301 40 2 906 423 0 0 0 chr1 42152124 42152171 -155043261 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 906 432 238 0 0 chr1 42152347 42152431 -155043001 + BC1_Mm scRNA scRNA 1 84 -68 2 906 393 44 44 0 chr1 42152660 42152728 -155042704 + (TTG)n Simple_repeat Simple_repeat 2 72 0 2 906 275 0 29 0 chr1 42154765 42154800 -155040632 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 906 518 289 116 32 chr1 42157116 42157564 -155037868 + L1MC3 LINE L1 5576 6069 -1716 2 906 227 204 41 0 chr1 42158448 42158497 -155036935 + L1M3c LINE L1 2 52 -6089 2 906 244 173 23 0 chr1 42159434 42159483 -155035949 + PB1D10 SINE Alu 65 122 -5 2 906 281 339 0 0 chr1 42160793 42160911 -155034521 + (TGG)n Simple_repeat Simple_repeat 1 118 0 2 906 2797 122 8 14 chr1 42160967 42161450 -155033982 + RLTR19-int LTR ERVK 1429 1908 -4229 2 906 23 0 0 0 chr1 42161450 42161473 -155033959 + AT_rich Low_complexity Low_complexity 1 23 0 2 906 444 319 115 27 chr1 42161476 42161737 -155033695 + B4 SINE B4 1 284 -8 2 906 195 167 0 0 chr1 42161750 42161792 -155033640 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 906 3437 146 51 22 chr1 42162243 42162868 -155032564 - Lx2B LINE L1 0 7000 6358 2 906 288 335 61 18 chr1 42163659 42163936 -155031496 + L1MC LINE L1 3662 3950 -2196 2 906 236 229 111 28 chr1 42163957 42164029 -155031403 + RSINE1 SINE B4 50 127 -38 2 906 263 49 0 24 chr1 42164077 42164119 -155031313 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 2 906 696 286 91 5 chr1 42166519 42166716 -155028716 - B3 SINE B2 0 216 3 2 906 408 216 0 0 chr1 42166980 42167082 -155028350 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 906 319 25 25 0 chr1 42167082 42167122 -155028310 + HAL1-3A_ME LINE L1 1974 2014 -844 2 906 327 222 12 25 chr1 42167848 42167934 -155027498 - MTEa LTR MaLR -15 364 280 2 906 248 293 37 0 chr1 42168139 42168221 -155027211 - MLT2B3 LTR ERVL -442 112 28 2 906 320 368 118 29 chr1 42168366 42168604 -155026828 + L1MC4 LINE L1 6713 6971 -1071 2 906 495 90 0 0 chr1 42168670 42168748 -155026684 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 906 957 127 6 25 chr1 42169304 42169465 -155025967 - URR1A DNA MER1_type 0 226 69 2 906 697 275 22 33 chr1 42169786 42169970 -155025462 + B3A SINE B2 1 182 -16 2 906 348 147 0 0 chr1 42170961 42171036 -155024396 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 906 373 77 0 19 chr1 42171063 42171116 -155024316 + HAL1-3A_ME LINE L1 1976 2027 -831 2 906 603 0 0 0 chr1 42171420 42171487 -155023945 + (TGG)n Simple_repeat Simple_repeat 2 68 0 2 906 303 49 0 0 chr1 42171488 42171529 -155023903 + (CTG)n Simple_repeat Simple_repeat 1 41 0 2 906 346 320 52 39 chr1 42172732 42172885 -155022547 - HAL1-3A_ME LINE L1 -420 2438 2284 2 906 186 189 0 0 chr1 42172941 42172978 -155022454 + CT-rich Low_complexity Low_complexity 3 39 0 2 906 318 316 13 0 chr1 42172993 42173069 -155022363 - PB1D10 SINE Alu -26 91 15 2 906 342 315 108 30 chr1 42173073 42173240 -155022192 - MLT1I LTR MaLR -231 180 1 2 906 301 279 65 65 chr1 42174118 42174287 -155021145 + L2a LINE L2 3254 3422 -4 2 906 1456 274 25 11 chr1 42175292 42175657 -155019775 + MTE2b LTR MaLR 2 371 -8 2 906 405 0 0 0 chr1 42175821 42175866 -155019566 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 906 495 33 0 0 chr1 42176815 42176876 -155018556 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 906 21 0 0 0 chr1 42176986 42177007 -155018425 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 1160 248 98 123 chr1 42177108 42177743 -155017689 - Lx8 LINE L1 -652 6821 6203 2 906 404 261 70 49 chr1 42178381 42178566 -155016866 + Lx7 LINE L1 5721 5909 -1787 2 906 460 345 52 11 chr1 42179421 42179688 -155015744 - L1MEf LINE L1 -4000 2200 1923 2 906 219 150 0 0 chr1 42179791 42179831 -155015601 + (A)n Simple_repeat Simple_repeat 1 40 0 2 906 324 376 74 12 chr1 42180307 42180714 -155014718 - L1MEf LINE L1 -4926 1274 843 2 906 232 341 106 49 chr1 42180858 42181206 -155014226 - L1MEf LINE L1 -5432 662 295 2 906 22 0 0 0 chr1 42182200 42182222 -155013210 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 21 57 0 0 chr1 42182719 42182754 -155012678 + AT_rich Low_complexity Low_complexity 1 35 0 2 906 2017 97 6 40 chr1 42183892 42184214 -155011218 - Lx2 LINE L1 0 6997 6687 2 906 557 96 0 0 chr1 42184600 42184683 -155010749 - Lx2 LINE L1 -326 6671 6589 2 906 206 93 93 0 chr1 42184857 42184911 -155010521 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 2 906 207 211 35 52 chr1 42184911 42185026 -155010406 + (TTATA)n Simple_repeat Simple_repeat 1 113 0 2 906 359 343 72 29 chr1 42185196 42185403 -155010029 + MIR SINE MIR 47 262 0 2 906 447 190 0 35 chr1 42186748 42186917 -155008515 + (TCTCTG)n Simple_repeat Simple_repeat 2 164 0 2 906 234 0 0 0 chr1 42187941 42187967 -155007465 + (T)n Simple_repeat Simple_repeat 1 26 0 2 906 384 97 0 0 chr1 42188188 42188250 -155007182 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 906 1026 239 62 51 chr1 42188315 42188685 -155006747 + ORR1D1 LTR MaLR 1 374 0 2 906 447 245 44 35 chr1 42188705 42188819 -155006613 - PB1D7 SINE Alu 0 120 6 2 906 214 381 41 0 chr1 42188846 42188943 -155006489 - MIRm SINE MIR -21 255 155 2 906 219 414 0 10 chr1 42188873 42188973 -155006459 - L2c LINE L2 -38 3349 3251 2 906 1023 53 0 15 chr1 42189725 42189860 -155005572 - L1Md_F2 LINE L1 -216 6366 6234 2 906 1578 71 0 5 chr1 42189862 42190074 -155005358 + L1Md_F2 LINE L1 6360 6570 -12 2 906 21 36 0 0 chr1 42190075 42190103 -155005329 + AT_rich Low_complexity Low_complexity 1 28 0 2 906 3086 133 24 50 chr1 42190121 42190697 -155004735 - RLTR31_Mm LTR ERVK 0 561 1 2 906 22 0 0 0 chr1 42191526 42191548 -155003884 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 219 89 21 62 chr1 42191628 42191676 -155003756 + T-rich Low_complexity Low_complexity 4 49 0 2 906 228 287 134 31 chr1 42193236 42193333 -155002099 - MLT1A1 LTR MaLR -30 378 272 2 906 24 53 0 0 chr1 42193796 42193834 -155001598 + AT_rich Low_complexity Low_complexity 1 38 0 2 906 183 80 0 0 chr1 42193917 42193942 -155001490 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2 906 36980 4 0 0 chr1 42194273 42199645 -154995787 + L1Md_A LINE L1 214 5586 -297 2 906 9093 1 0 0 chr1 42199645 42200641 -154994791 + L1Md_A LINE L1 5587 6582 0 2 906 496 305 15 23 chr1 42201069 42201200 -154994232 + RSINE1 SINE B4 3 132 -33 2 906 23 33 0 0 chr1 42202023 42202053 -154993379 + AT_rich Low_complexity Low_complexity 1 30 0 2 906 494 352 56 32 chr1 42202467 42202808 -154992624 + L1MC4a LINE L1 7231 7579 -303 2 906 550 257 14 27 chr1 42202885 42203033 -154992399 - RSINE1 SINE B4 -17 148 3 2 906 320 292 0 94 chr1 42203068 42203227 -154992205 + L1MC4a LINE L1 7739 7882 0 2 906 1078 103 0 0 chr1 42203948 42204094 -154991338 - B1_Mus2 SINE Alu 0 147 2 2 906 232 293 24 24 chr1 42204208 42204292 -154991140 + MER5A1 DNA MER1_type 5 88 -78 2 113 582 327 127 23 chr1 42204683 42205271 -154990161 + L1ME1 LINE L1 5527 6168 -11 2 907 2003 117 9 84 chr1 42205376 42205721 -154989711 - ORR1A2 LTR MaLR 0 327 9 2 907 309 51 0 0 chr1 42208562 42208601 -154986831 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 907 205 304 0 0 chr1 42209691 42209747 -154985685 + GA-rich Low_complexity Low_complexity 3 58 0 2 907 965 108 18 6 chr1 42209749 42209917 -154985515 + (GA)n Simple_repeat Simple_repeat 1 170 0 2 907 236 288 0 0 chr1 42212061 42212120 -154983312 + ID4_ SINE ID 15 73 -10 2 907 216 0 0 0 chr1 42212701 42212725 -154982707 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 907 245 259 0 0 chr1 42212842 42212896 -154982536 + B3A SINE B2 2 55 -143 2 907 444 51 0 0 chr1 42212928 42212987 -154982445 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 907 473 312 96 48 chr1 42213004 42213253 -154982179 + MLT1B LTR MaLR 12 272 -118 2 907 723 264 6 29 chr1 42213233 42213405 -154982027 + B3 SINE B2 44 211 -5 2 907 526 350 76 65 chr1 42214288 42214642 -154980790 - ORR1E LTR MaLR 0 359 2 2 907 720 111 0 0 chr1 42214695 42214803 -154980629 + (TC)n Simple_repeat Simple_repeat 2 109 0 2 907 22 0 0 0 chr1 42215362 42215384 -154980048 + AT_rich Low_complexity Low_complexity 1 22 0 3 907 226 143 89 0 chr1 42215408 42215464 -154979968 + L1MC5 LINE L1 6769 6829 -1132 3 907 233 302 57 55 chr1 42215620 42215743 -154979689 - PB1D10 SINE Alu -12 137 18 3 907 339 238 103 20 chr1 42215872 42216018 -154979414 + L1MC3 LINE L1 7221 7378 -407 3 907 592 289 46 7 chr1 42216714 42216867 -154978565 + B3A SINE B2 2 160 -38 3 907 204 40 0 0 chr1 42216867 42216892 -154978540 + (CACAC)n Simple_repeat Simple_repeat 1 25 0 3 907 909 236 25 5 chr1 42217741 42217945 -154977487 - B3 SINE B2 -7 209 2 3 907 232 277 53 106 chr1 42218135 42218248 -154977184 + MIR3 SINE MIR 50 156 -52 3 907 186 227 0 0 chr1 42218694 42218738 -154976694 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 907 27 29 0 0 chr1 42218739 42218773 -154976659 + AT_rich Low_complexity Low_complexity 1 34 0 3 907 410 293 47 31 chr1 42218857 42218984 -154976448 + B4A SINE B4 158 286 -6 3 907 238 228 18 0 chr1 42220167 42220224 -154975208 - MIRm SINE MIR -4 272 215 3 907 2360 40 0 48 chr1 42221014 42221327 -154974105 - IAPLTR2b LTR ERVK -29 298 1 3 907 2148 183 41 11 chr1 42221567 42222143 -154973289 - Lx4B LINE L1 -864 6186 5649 3 907 1175 203 12 12 chr1 42222138 42222392 -154973040 + Lx4B LINE L1 6789 7042 -16 3 907 974 157 0 6 chr1 42222393 42222572 -154972860 + GA-rich Low_complexity Low_complexity 3 180 0 3 907 4494 192 128 17 chr1 42222863 42223898 -154971534 - Lx5 LINE L1 -3 7047 5899 3 907 1631 132 17 46 chr1 42223895 42224197 -154971235 + Lx5 LINE L1 5662 5954 -1096 3 907 539 278 44 78 chr1 42227901 42228194 -154967238 + RLTR15 LTR ERVK 1 283 -76 3 907 276 180 60 0 chr1 42228264 42228314 -154967118 - Lx7 LINE L1 -1069 6404 6352 3 907 2286 64 81 0 chr1 42228326 42228609 -154966823 + L1_Mus1 LINE L1 6262 6567 0 3 907 25 0 0 0 chr1 42228609 42228634 -154966798 + AT_rich Low_complexity Low_complexity 1 25 0 3 907 585 314 137 68 chr1 42228700 42228830 -154966602 - Lx7 LINE L1 -1201 6272 6123 3 907 2289 106 15 61 chr1 42228830 42229172 -154966260 - ORR1A2 LTR MaLR 0 327 2 3 907 660 282 152 42 chr1 42229172 42229631 -154965801 - Lx7 LINE L1 -1351 6122 5642 3 907 478 152 32 8 chr1 42229799 42229925 -154965507 + (CA)n Simple_repeat Simple_repeat 2 130 0 3 907 369 192 164 0 chr1 42229926 42229999 -154965433 + MTD LTR MaLR 207 291 -128 3 907 283 405 34 7 chr1 42230010 42230159 -154965273 + B3 SINE B2 51 203 -13 3 907 219 254 0 0 chr1 42230202 42230265 -154965167 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 3 907 23 68 0 0 chr1 42230266 42230310 -154965122 + AT_rich Low_complexity Low_complexity 1 44 0 3 907 669 297 77 101 chr1 42230313 42230848 -154964584 - Lx8 LINE L1 -29 7444 6923 3 907 406 289 165 11 chr1 42230854 42231127 -154964305 + L1MD1 LINE L1 5919 6233 -9 3 907 194 286 0 20 chr1 42233298 42233348 -154962084 + L3 LINE CR1 4414 4462 -27 3 907 589 268 195 12 chr1 42233484 42233704 -154961728 + L1MA7 LINE L1 5335 5612 -679 3 907 285 29 0 0 chr1 42233704 42233738 -154961694 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 907 589 268 195 12 chr1 42233738 42233850 -154961582 + L1MA7 LINE L1 5613 5727 -564 3 907 288 0 0 0 chr1 42233871 42233903 -154961529 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 907 484 291 127 42 chr1 42233907 42234191 -154961241 + L1MA7 LINE L1 5821 6128 -163 3 907 759 22 0 0 chr1 42234506 42234595 -154960837 + (TC)n Simple_repeat Simple_repeat 1 89 0 3 907 568 310 138 29 chr1 42234674 42234950 -154960482 - MTD LTR MaLR 0 419 114 3 907 1082 282 69 12 chr1 42234967 42235088 -154960344 + ORR1E LTR MaLR 1 122 -237 3 907 1005 40 0 0 chr1 42235088 42235214 -154960218 + (TC)n Simple_repeat Simple_repeat 2 127 0 3 907 1082 282 69 12 chr1 42235214 42235426 -154960006 + ORR1E LTR MaLR 123 353 -6 3 907 1616 178 16 3 chr1 42235523 42235844 -154959588 + L1_Mur3 LINE L1 2421 2745 -3135 3 907 1212 196 57 36 chr1 42235855 42236136 -154959296 + Lx7 LINE L1 5647 5933 -1763 3 907 531 0 0 0 chr1 42236356 42236415 -154959017 + (TCC)n Simple_repeat Simple_repeat 3 61 0 3 907 484 89 0 62 chr1 42237015 42237111 -154958321 - L1Md_F2 LINE L1 0 6582 6493 3 907 2353 118 17 27 chr1 42237230 42237648 -154957784 - MT2B2 LTR ERVL -73 402 2 3 907 678 150 62 8 chr1 42237648 42237776 -154957656 - B1_Mus1 SINE Alu -13 135 1 3 907 541 99 0 98 chr1 42237899 42238022 -154957410 + L1Md_F3 LINE L1 6471 6581 -3 3 907 591 274 147 11 chr1 42238030 42238207 -154957225 - B3 SINE B2 -13 203 3 3 907 513 268 34 40 chr1 42238216 42238364 -154957068 - B1_Mur3 SINE Alu 0 149 3 3 907 256 356 118 29 chr1 42238364 42238404 -154957028 - B4 SINE B4 -197 95 44 3 907 386 273 203 28 chr1 42238380 42238523 -154956909 - B4A SINE B4 -71 221 54 3 907 312 327 43 34 chr1 42238678 42238795 -154956637 + B3A SINE B2 1 118 -80 3 907 470 330 32 58 chr1 42238859 42239049 -154956383 + MER44D DNA MER2_type 11 195 -510 3 907 241 330 85 17 chr1 42239126 42239275 -154956157 + MER44D DNA MER2_type 378 538 -167 3 907 1287 27 0 7 chr1 42239275 42239422 -154956010 - B1_Mus2 SINE Alu -1 146 1 3 907 241 330 85 17 chr1 42239422 42239448 -154955984 + MER44D DNA MER2_type 539 565 -140 3 907 1590 233 41 51 chr1 42239450 42239861 -154955571 - MTD LTR MaLR 0 419 13 3 907 386 313 47 35 chr1 42239884 42240053 -154955379 + MER44D DNA MER2_type 503 673 -32 3 907 786 117 0 0 chr1 42240460 42240580 -154954852 + (TTTC)n Simple_repeat Simple_repeat 3 122 0 3 907 1200 84 0 0 chr1 42240583 42240726 -154954706 - B1_Mus1 SINE Alu -5 143 1 3 907 208 220 16 33 chr1 42240997 42241058 -154954374 + GA-rich Low_complexity Low_complexity 6 65 0 3 907 21 36 0 0 chr1 42242080 42242108 -154953324 + AT_rich Low_complexity Low_complexity 1 28 0 3 907 7494 75 16 11 chr1 42243442 42244537 -154950895 - L1_Mus2 LINE L1 -1 6565 5465 3 907 205 324 116 9 chr1 42244668 42244780 -154950652 + MIRc SINE MIR 96 219 -49 3 907 526 357 70 26 chr1 42245856 42246126 -154949306 - B4 SINE B4 0 292 11 3 907 594 263 20 40 chr1 42246219 42246235 -154949197 - B3A SINE B2 0 198 183 3 907 369 0 0 0 chr1 42246235 42246276 -154949156 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 907 594 263 20 40 chr1 42246276 42246461 -154948971 - B3A SINE B2 -16 182 2 3 907 180 0 0 0 chr1 42246903 42246923 -154948509 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 3 907 669 70 0 0 chr1 42246925 42247025 -154948407 + (T)n Simple_repeat Simple_repeat 1 100 0 3 907 464 338 110 18 chr1 42248473 42248636 -154946796 - B3A SINE B2 -20 178 1 3 907 656 245 72 52 chr1 42249855 42250248 -154945184 + MT2B LTR ERVL 15 500 -101 3 907 2935 79 44 18 chr1 42251643 42252029 -154943403 + MTA_Mm LTR MaLR 1 396 0 3 907 502 261 0 0 chr1 42252029 42252144 -154943288 + RMER1B Other Other 597 711 -355 3 907 3685 248 41 148 chr1 42252297 42253785 -154941647 + RMER1C Other Other 12 1340 -2 3 907 626 326 65 29 chr1 42253951 42254226 -154941206 + B4A SINE B4 2 286 -6 3 907 549 83 0 0 chr1 42254226 42254310 -154941122 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 907 348 161 0 0 chr1 42255458 42255520 -154939912 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 907 521 278 139 23 chr1 42256856 42257029 -154938403 - RMER30 DNA MER1_type -2 200 8 3 907 375 193 103 26 chr1 42257073 42257190 -154938242 + BC1_Mm scRNA scRNA 1 126 -26 3 907 382 218 0 24 chr1 42257256 42257383 -154938049 + G-rich Low_complexity Low_complexity 2 125 0 3 907 3660 45 30 9 chr1 42257413 42257840 -154937592 + RLTR10C LTR ERVK 1 436 0 3 907 196 178 32 43 chr1 42257845 42257939 -154937493 + GA-rich Low_complexity Low_complexity 4 96 0 3 907 861 127 23 6 chr1 42257962 42258136 -154937296 + GA-rich Low_complexity Low_complexity 4 180 0 3 907 226 299 20 10 chr1 42258147 42258245 -154937187 + GA-rich Low_complexity Low_complexity 1 99 0 3 907 261 0 0 0 chr1 42259360 42259389 -154936043 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 3 907 2353 197 105 0 chr1 42259390 42259846 -154935586 - Lx5 LINE L1 -15 7035 6532 3 907 5159 226 55 35 chr1 42259836 42259870 -154935562 - Lx9 LINE L1 -101 7543 7511 3 907 261 57 0 0 chr1 42259870 42259905 -154935527 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 907 5159 255 59 37 chr1 42259905 42261616 -154933816 - Lx9 LINE L1 -134 7510 5636 3 907 385 276 88 159 chr1 42261614 42261998 -154933434 - Lx9 LINE L1 -6732 876 520 3 907 528 56 0 0 chr1 42262011 42262083 -154933349 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 907 724 331 104 11 chr1 42262083 42262440 -154932992 + L1MB3 LINE L1 5659 6048 -135 3 907 267 243 14 14 chr1 42264201 42264272 -154931160 + (CATA)n Simple_repeat Simple_repeat 4 74 0 3 907 24 0 0 0 chr1 42265688 42265712 -154929720 + AT_rich Low_complexity Low_complexity 1 24 0 3 907 183 100 0 0 chr1 42266156 42266186 -154929246 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 907 280 218 10 19 chr1 42267309 42267412 -154928020 + CT-rich Low_complexity Low_complexity 3 104 0 3 907 696 393 50 17 chr1 42267821 42268240 -154927192 - MER70B LTR ERVL -75 503 71 3 907 536 112 22 0 chr1 42268276 42268365 -154927067 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 3 907 217 171 0 24 chr1 42268366 42268408 -154927024 + GA-rich Low_complexity Low_complexity 2 42 0 3 907 233 232 0 14 chr1 42268409 42268479 -154926953 + G-rich Low_complexity Low_complexity 1 69 0 3 907 663 256 71 57 chr1 42268670 42268881 -154926551 + B3A SINE B2 2 215 -1 3 907 331 327 30 6 chr1 42269941 42270080 -154925352 + LTR33A LTR ERVL 49 188 -343 3 907 222 37 0 0 chr1 42270126 42270153 -154925279 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 907 320 249 101 47 chr1 42271577 42271746 -154923686 - L1M2 LINE L1 -809 5491 5314 3 907 23 0 0 0 chr1 42272673 42272696 -154922736 + AT_rich Low_complexity Low_complexity 1 23 0 3 907 270 330 96 104 chr1 42273073 42273198 -154922234 + B1F SINE Alu 3 126 -23 3 907 217 288 17 0 chr1 42273216 42273275 -154922157 + GA-rich Low_complexity Low_complexity 6 65 0 3 907 752 310 110 21 chr1 42273711 42274037 -154921395 + MER82 DNA MER2_type 295 649 -4 3 907 486 0 0 0 chr1 42274069 42274123 -154921309 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 907 241 254 123 55 chr1 42274824 42274970 -154920462 - MER74C LTR ERVL -4 456 301 4 907 4615 94 10 30 chr1 42275115 42275726 -154919706 - MT2B LTR ERVL -2 599 1 4 907 370 307 113 21 chr1 42275726 42275958 -154919474 + MER2 DNA MER2_type 88 340 -5 4 907 463 278 113 36 chr1 42275971 42276139 -154919293 - MER74C LTR ERVL -279 181 1 4 907 231 241 35 0 chr1 42277359 42277417 -154918015 - ID_B1 SINE B4 -9 215 156 4 907 2440 205 15 77 chr1 42277419 42278073 -154917359 - Lx9 LINE L1 -227 7417 6804 4 907 1022 281 144 21 chr1 42278072 42278730 -154916702 + L1MA6 LINE L1 5373 6111 -189 4 907 454 75 25 0 chr1 42278834 42278914 -154916518 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 907 450 0 0 0 chr1 42282577 42282627 -154912805 + (TTA)n Simple_repeat Simple_repeat 1 50 0 4 907 189 269 0 0 chr1 42282835 42282913 -154912519 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 907 227 192 14 0 chr1 42282959 42283032 -154912400 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 907 304 276 93 64 chr1 42283254 42283406 -154912026 + PB1 SINE Alu 1 149 0 4 907 276 277 181 0 chr1 42284116 42284210 -154911222 - ORR1E LTR MaLR -230 129 19 4 907 345 324 134 14 chr1 42284832 42285048 -154910384 + MER2 DNA MER2_type 87 328 -17 4 907 557 297 0 39 chr1 42285070 42285224 -154910208 + B4A SINE B4 1 148 -144 4 907 273 270 122 93 chr1 42285288 42285427 -154910005 + B4A SINE B4 149 291 -1 4 907 270 244 0 0 chr1 42285507 42285589 -154909843 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 907 543 212 0 0 chr1 42285604 42285755 -154909677 + (CA)n Simple_repeat Simple_repeat 2 152 0 4 907 24 0 0 0 chr1 42286266 42286290 -154909142 + AT_rich Low_complexity Low_complexity 1 24 0 4 907 364 247 25 0 chr1 42287103 42287184 -154908248 - MIR SINE MIR -178 84 2 4 907 567 29 0 0 chr1 42288217 42288286 -154907146 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 907 21 0 0 0 chr1 42289528 42289549 -154905883 + AT_rich Low_complexity Low_complexity 1 21 0 4 907 186 43 0 0 chr1 42290092 42290115 -154905317 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 907 673 264 17 120 chr1 42291722 42291963 -154903469 - B3 SINE B2 0 216 1 4 907 2301 63 0 0 chr1 42294163 42294465 -154900967 - L1_Mm LINE L1 -2641 3242 2941 4 907 4512 52 6 4 chr1 42294465 42295000 -154900432 + L1Md_F2 LINE L1 6047 6582 0 4 907 1023 73 0 0 chr1 42296314 42296451 -154898981 + (CA)n Simple_repeat Simple_repeat 1 137 0 4 907 342 0 0 0 chr1 42296457 42296495 -154898937 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 907 491 0 17 0 chr1 42296883 42296942 -154898490 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 907 311 113 56 0 chr1 42297706 42297777 -154897655 + GA-rich Low_complexity Low_complexity 1 75 0 4 907 200 239 132 15 chr1 42298522 42298590 -154896842 - L2b LINE L2 -24 3351 3276 4 907 241 364 30 0 chr1 42299048 42299147 -154896285 - B1F SINE Alu -26 123 22 4 907 557 158 8 0 chr1 42300087 42300207 -154895225 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 907 621 0 0 0 chr1 42300211 42300280 -154895152 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 907 252 0 0 0 chr1 42300500 42300528 -154894904 + (T)n Simple_repeat Simple_repeat 1 28 0 4 907 390 21 0 0 chr1 42300677 42300724 -154894708 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 907 21 0 0 0 chr1 42301252 42301273 -154894159 + AT_rich Low_complexity Low_complexity 1 21 0 4 907 24 85 0 0 chr1 42301579 42301638 -154893794 + AT_rich Low_complexity Low_complexity 1 59 0 4 907 975 333 32 24 chr1 42301925 42302263 -154893169 + Tigger7 DNA MER2_type 14 354 -2137 4 907 649 261 9 84 chr1 42304506 42304719 -154890713 + B3A SINE B2 2 198 0 4 907 303 93 0 0 chr1 42305195 42305238 -154890194 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 907 459 82 0 0 chr1 42305241 42305314 -154890118 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 4 907 237 65 0 0 chr1 42305637 42305668 -154889764 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 907 1188 58 0 0 chr1 42305672 42305810 -154889622 - B1_Mus1 SINE Alu -10 138 1 4 907 1923 305 114 46 chr1 42307723 42307931 -154887501 - Lx8 LINE L1 -3 7470 7230 4 907 774 41 0 0 chr1 42307931 42308029 -154887403 + (TC)n Simple_repeat Simple_repeat 2 99 0 4 907 1923 305 114 46 chr1 42308029 42309047 -154886385 - Lx8 LINE L1 -244 7229 6158 4 907 459 113 0 0 chr1 42309047 42309118 -154886314 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 907 1923 305 114 46 chr1 42309118 42309149 -154886283 - Lx8 LINE L1 -1316 6157 6127 4 907 180 125 0 0 chr1 42309528 42309560 -154885872 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 907 486 295 35 94 chr1 42309569 42309771 -154885661 + B4A SINE B4 5 194 -98 4 907 849 137 70 21 chr1 42309949 42310091 -154885341 - B1_Mur4 SINE Alu -1 149 1 4 907 279 122 0 0 chr1 42312484 42312533 -154882899 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 907 288 0 0 0 chr1 42312535 42312567 -154882865 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 907 204 125 0 0 chr1 42315859 42315891 -154879541 + (A)n Simple_repeat Simple_repeat 1 32 0 4 907 393 22 0 0 chr1 42316774 42316820 -154878612 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 907 21 36 0 0 chr1 42317914 42317942 -154877490 + AT_rich Low_complexity Low_complexity 1 28 0 4 907 367 111 29 48 chr1 42319085 42319189 -154876243 + T-rich Low_complexity Low_complexity 6 107 0 4 907 203 61 30 0 chr1 42319484 42319517 -154875915 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 907 28 29 0 0 chr1 42320654 42320689 -154874743 + AT_rich Low_complexity Low_complexity 1 35 0 4 907 387 118 0 0 chr1 42321661 42321737 -154873695 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 4 907 342 0 0 0 chr1 42321739 42321777 -154873655 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 907 644 236 0 125 chr1 42322899 42323083 -154872349 + B3 SINE B2 7 167 -49 4 907 254 50 25 0 chr1 42323127 42323167 -154872265 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 4 907 255 296 100 104 chr1 42323217 42323477 -154871955 + LTR81B LTR ERV1? 1049 1307 -86 4 907 234 0 0 0 chr1 42323619 42323645 -154871787 + (A)n Simple_repeat Simple_repeat 1 26 0 4 907 938 158 206 0 chr1 42324458 42324642 -154870790 + URR1A DNA MER1_type 5 226 0 4 907 189 94 0 0 chr1 42326700 42326732 -154868700 + (A)n Simple_repeat Simple_repeat 1 32 0 4 907 244 272 24 36 chr1 42327011 42327095 -154868337 + MLT1A1 LTR MaLR 302 384 -24 4 907 228 311 34 86 chr1 42327370 42327637 -154867795 + RMER12 LTR ERVK 706 958 -364 4 907 402 253 0 0 chr1 42327677 42327851 -154867581 + (TG)n Simple_repeat Simple_repeat 2 175 0 4 907 317 261 9 0 chr1 42327871 42327986 -154867446 + (TG)n Simple_repeat Simple_repeat 2 117 0 4 907 281 274 0 64 chr1 42328264 42328342 -154867090 - ID4 SINE ID -9 74 2 4 907 22 0 0 0 chr1 42328923 42328945 -154866487 + AT_rich Low_complexity Low_complexity 1 22 0 4 907 240 59 0 0 chr1 42329816 42329850 -154865582 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 907 25 0 0 0 chr1 42330181 42330206 -154865226 + AT_rich Low_complexity Low_complexity 1 25 0 4 907 1184 248 72 15 chr1 42330359 42330715 -154864717 + MTD LTR MaLR 21 379 0 4 907 960 169 0 0 chr1 42332809 42332987 -154862445 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 907 267 79 0 0 chr1 42333026 42333064 -154862368 + (GGA)n Simple_repeat Simple_repeat 1 38 0 4 907 407 35 18 0 chr1 42333758 42333815 -154861617 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 4 907 234 91 0 0 chr1 42334560 42334593 -154860839 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 4 907 276 318 88 29 chr1 42335625 42335763 -154859669 - MIR SINE MIR -99 169 18 4 907 231 36 0 0 chr1 42335956 42335984 -154859448 + (A)n Simple_repeat Simple_repeat 1 28 0 4 908 243 0 0 0 chr1 42336338 42336365 -154859067 + (T)n Simple_repeat Simple_repeat 1 27 0 4 908 671 24 0 12 chr1 42337265 42337351 -154858081 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 908 448 350 77 0 chr1 42338052 42338235 -154857197 + B3 SINE B2 10 206 -10 4 908 351 192 0 0 chr1 42338636 42338709 -154856723 + (ATG)n Simple_repeat Simple_repeat 3 75 0 4 908 249 98 0 0 chr1 42338884 42338925 -154856507 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 908 321 390 19 14 chr1 42339252 42339460 -154855972 - L1ME2 LINE L1 -304 5860 5652 4 908 542 154 68 34 chr1 42339991 42340139 -154855293 + Lx3C LINE L1 6820 6972 -4 4 908 270 0 0 0 chr1 42340463 42340493 -154854939 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 908 457 350 107 38 chr1 42340504 42340870 -154854562 - L1MDa LINE L1 -896 5641 5251 4 908 335 258 51 19 chr1 42340880 42341038 -154854394 + Lx7 LINE L1 7200 7362 -334 4 908 309 26 0 0 chr1 42341071 42341109 -154854323 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 908 22 35 0 0 chr1 42341158 42341187 -154854245 + AT_rich Low_complexity Low_complexity 1 29 0 4 908 915 315 91 29 chr1 42341374 42342280 -154853152 - L1MDa LINE L1 -1487 5050 4089 4 908 216 233 33 0 chr1 42342600 42342660 -154852772 + T-rich Low_complexity Low_complexity 2 63 0 4 908 486 312 82 31 chr1 42342822 42343140 -154852292 - L1MDa LINE L1 -2917 3620 3287 4 908 998 92 43 0 chr1 42343154 42343295 -154852137 - B1_Mus1 SINE Alu 0 148 2 4 908 226 279 45 9 chr1 42343455 42343567 -154851865 + L1MD LINE L1 2492 2607 -3539 4 908 416 306 26 96 chr1 42343734 42344053 -154851379 - L1MDa LINE L1 -3753 2784 2475 4 908 26 82 0 0 chr1 42344464 42344525 -154850907 + AT_rich Low_complexity Low_complexity 1 61 0 4 908 22 35 0 0 chr1 42344897 42344926 -154850506 + AT_rich Low_complexity Low_complexity 1 29 0 4 908 411 171 0 0 chr1 42345501 42345577 -154849855 + (TTA)n Simple_repeat Simple_repeat 3 78 0 4 908 1485 307 61 63 chr1 42345584 42346324 -154849108 - Lx5 LINE L1 -15 7035 6298 4 908 825 146 0 0 chr1 42346375 42346526 -154848906 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 4 908 1161 76 0 0 chr1 42346528 42346673 -154848759 - B1_Mus2 SINE Alu 0 147 3 4 908 557 264 105 34 chr1 42346835 42347101 -154848331 + RMER20B LTR ERVK 131 415 -212 4 908 200 213 0 0 chr1 42347620 42347667 -154847765 + T-rich Low_complexity Low_complexity 1 47 0 4 908 232 274 65 0 chr1 42347786 42347848 -154847584 - ID4_ SINE ID -16 67 2 4 908 279 241 79 53 chr1 42349147 42349261 -154846171 - MIR3 SINE MIR -1 207 91 5 908 1836 58 8 0 chr1 42350970 42351211 -154844221 - MTB LTR MaLR -157 243 1 5 908 234 0 0 0 chr1 42353898 42353924 -154841508 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 908 501 62 0 0 chr1 42354202 42354267 -154841165 + (TTTCC)n Simple_repeat Simple_repeat 1 65 0 5 908 1117 88 0 7 chr1 42354267 42354415 -154841017 - B1_Mus2 SINE Alu 0 147 1 5 908 660 11 34 0 chr1 42355927 42356016 -154839416 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 908 508 365 27 5 chr1 42356442 42356665 -154838767 - L3b LINE CR1 -202 280 53 5 908 309 217 14 0 chr1 42357088 42357157 -154838275 - L1MC1 LINE L1 -17 6316 6247 5 908 339 354 52 5 chr1 42357270 42357480 -154837952 - L1MC1 LINE L1 -216 6117 5898 5 908 25 0 0 0 chr1 42357577 42357602 -154837830 + AT_rich Low_complexity Low_complexity 1 25 0 5 908 519 82 0 0 chr1 42357619 42357692 -154837740 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 908 348 322 64 17 chr1 42357698 42357932 -154837500 - Lx8 LINE L1 -39 7434 7190 5 908 1336 275 43 14 chr1 42358694 42359136 -154836296 + Lx8 LINE L1 7017 7471 -2 5 908 288 0 0 0 chr1 42359415 42359447 -154835985 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 908 394 342 31 0 chr1 42359515 42359676 -154835756 + MLT1G3 LTR MaLR 427 592 -3 5 908 33 56 0 0 chr1 42360146 42360200 -154835232 + AT_rich Low_complexity Low_complexity 1 54 0 5 908 529 249 72 29 chr1 42363437 42363596 -154831836 + RMER17C LTR ERVK 1 204 -206 5 908 876 20 0 0 chr1 42363596 42363698 -154831734 + (TTC)n Simple_repeat Simple_repeat 1 102 0 5 908 529 262 89 37 chr1 42363698 42363860 -154831572 + RMER17C LTR ERVK 205 381 -29 5 908 192 231 0 0 chr1 42363986 42364038 -154831394 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 908 415 268 174 0 chr1 42364038 42364176 -154831256 - RSINE1 SINE B4 0 165 4 5 908 385 133 27 0 chr1 42364393 42364468 -154830964 + CT-rich Low_complexity Low_complexity 2 78 0 5 908 1300 247 134 17 chr1 42365273 42365631 -154829801 + MTD LTR MaLR 20 419 0 5 908 313 321 128 12 chr1 42365631 42365779 -154829653 + Tigger5 DNA MER2_type 76 242 -2164 5 908 740 325 102 14 chr1 42366742 42367095 -154828337 - Tigger7 DNA MER2_type -2083 408 25 5 908 271 274 46 64 chr1 42367215 42367324 -154828108 + PB1D7 SINE Alu 1 107 -13 5 908 884 189 173 0 chr1 42367463 42367654 -154827778 + URR1B DNA MER1_type 1 224 -1 5 908 360 0 0 0 chr1 42367787 42367827 -154827605 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 908 555 231 11 124 chr1 42367925 42368103 -154827329 - B3A SINE B2 -16 182 25 5 908 1744 206 197 0 chr1 42368107 42368538 -154826894 + Lx7 LINE L1 6432 6947 -749 5 908 195 252 0 26 chr1 42368615 42368729 -154826703 + (CATA)n Simple_repeat Simple_repeat 4 114 0 5 908 291 281 10 68 chr1 42368839 42368942 -154826490 + MLT1A0 LTR MaLR 1 97 -268 5 908 180 265 0 0 chr1 42369806 42369855 -154825577 + L2 LINE L2 2505 2553 -866 5 908 5239 142 52 3 chr1 42370039 42370891 -154824541 - Lx4A LINE L1 -3 7055 6163 5 908 373 218 0 0 chr1 42370892 42370970 -154824462 + Lx4B LINE L1 6108 6185 -873 5 908 2066 249 67 42 chr1 42371164 42372014 -154823418 + L1_Rod LINE L1 743 1583 -4264 5 908 3027 98 0 0 chr1 42372014 42372420 -154823012 + MTB_Mm LTR MaLR 2 407 0 5 908 2066 250 50 93 chr1 42372420 42373132 -154822300 + L1_Rod LINE L1 1584 2286 -3561 5 908 249 108 0 0 chr1 42373217 42373254 -154822178 + (CAG)n Simple_repeat Simple_repeat 3 39 0 5 908 611 224 94 30 chr1 42373297 42373534 -154821898 + Lx4B LINE L1 6727 7056 -2 5 908 2245 204 55 31 chr1 42373541 42373750 -154821682 + Lx9 LINE L1 5192 5412 -435 5 908 258 32 0 0 chr1 42373750 42373781 -154821651 + (CCA)n Simple_repeat Simple_repeat 1 31 0 5 908 2245 222 59 31 chr1 42373781 42374273 -154821159 + Lx9 LINE L1 5413 5940 -1533 5 908 236 30 30 0 chr1 42374273 42374306 -154821126 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 908 2110 334 90 30 chr1 42374306 42374546 -154820886 + Lx9 LINE L1 5941 6335 -1309 5 908 324 70 0 0 chr1 42374546 42374589 -154820843 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 908 339 78 0 0 chr1 42374589 42374639 -154820793 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 908 2110 244 91 10 chr1 42374639 42375193 -154820239 + Lx9 LINE L1 6336 6938 -706 5 908 693 236 38 48 chr1 42375205 42375414 -154820018 + Lx9 LINE L1 6993 7199 -445 5 908 245 202 60 10 chr1 42375471 42375571 -154819861 + (TA)n Simple_repeat Simple_repeat 1 105 0 5 908 245 204 69 85 chr1 42375573 42375761 -154819671 + Lx9 LINE L1 7460 7644 0 5 908 367 256 94 40 chr1 42375768 42375976 -154819456 + L1_Rod LINE L1 4733 4959 -1184 5 908 1263 96 10 34 chr1 42376033 42376238 -154819194 + L1_Mus3 LINE L1 6437 6636 -2 5 908 230 219 125 0 chr1 42376261 42376325 -154819107 - Lx9 LINE L1 -8 7636 7565 5 908 388 308 25 8 chr1 42376323 42376444 -154818988 - Lx8 LINE L1 -150 7323 7201 5 908 959 263 41 38 chr1 42376459 42376803 -154818629 - Lx8 LINE L1 -452 7021 6677 5 908 579 157 0 0 chr1 42377208 42377316 -154818116 + GA-rich Low_complexity Low_complexity 2 109 0 5 908 971 245 78 28 chr1 42378709 42379096 -154816336 + L1M4 LINE L1 4957 5362 -784 5 908 328 363 67 26 chr1 42379156 42379255 -154816177 + L1M4 LINE L1 5431 5535 -649 5 908 411 21 0 0 chr1 42379255 42379303 -154816129 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 908 328 363 67 26 chr1 42379303 42379398 -154816034 + L1M4 LINE L1 5536 5633 -551 5 908 27 0 0 0 chr1 42379440 42379467 -154815965 + AT_rich Low_complexity Low_complexity 1 27 0 5 908 1853 275 58 32 chr1 42379468 42380121 -154815311 + Lx8 LINE L1 6203 6872 -601 5 908 304 347 42 70 chr1 42380279 42380493 -154814939 + RMER15 LTR ERVL 253 460 -115 5 908 310 301 88 0 chr1 42380650 42380763 -154814669 + L1M4 LINE L1 5655 5777 -401 5 908 1108 66 0 0 chr1 42380912 42381048 -154814384 + B1_Mus1 SINE Alu 1 136 -12 5 908 207 0 0 0 chr1 42381049 42381072 -154814360 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 908 237 324 0 0 chr1 42381244 42381315 -154814117 + L2b LINE L2 3287 3357 -18 5 908 21 0 0 0 chr1 42382090 42382111 -154813321 + AT_rich Low_complexity Low_complexity 1 21 0 5 908 568 301 108 88 chr1 42383044 42383295 -154812137 + B4A SINE B4 37 292 0 5 908 190 221 0 42 chr1 42383340 42383411 -154812021 + (CATA)n Simple_repeat Simple_repeat 4 71 0 5 908 333 282 0 0 chr1 42383456 42383580 -154811852 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 908 3555 84 42 4 chr1 42384975 42385478 -154809954 - L1_Mus2 LINE L1 -2 6564 6043 5 908 6213 98 10 5 chr1 42385478 42386974 -154808458 + L1_Mus3 LINE L1 4966 6467 -171 5 908 193 212 0 88 chr1 42386991 42387048 -154808384 - MIRc SINE MIR -40 228 177 5 908 233 120 40 0 chr1 42387694 42387744 -154807688 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 5 908 257 345 0 0 chr1 42389692 42389779 -154805653 + Tigger5 DNA MER2_type 2319 2405 -1 5 908 344 268 81 138 chr1 42390442 42390590 -154804842 + MTD LTR MaLR 1 136 -283 5 908 6327 86 21 2 chr1 42390590 42391416 -154804016 - L1_Mus4 LINE L1 -1 6635 5795 5 908 344 268 81 138 chr1 42391416 42391514 -154803918 + MTD LTR MaLR 137 233 -186 5 908 36264 34 0 0 chr1 42391514 42396878 -154798554 + L1Md_T LINE L1 128 5589 -297 5 908 9573 4 1 0 chr1 42396878 42397873 -154797559 + L1Md_T LINE L1 5590 6585 0 5 908 3283 84 0 2 chr1 42398041 42398471 -154796961 - L1_Mm LINE L1 -75 5808 5380 5 908 1085 219 113 4 chr1 42398473 42398748 -154796684 + MTD LTR MaLR 115 419 0 5 908 416 315 37 21 chr1 42398919 42399107 -154796325 + MTC LTR MaLR 1 191 -230 5 908 235 259 166 23 chr1 42399108 42399325 -154796107 - L1MEf LINE L1 -5174 1026 779 5 908 2274 158 70 13 chr1 42399326 42399724 -154795708 - MTC LTR MaLR 0 421 1 5 908 239 188 99 0 chr1 42399904 42399982 -154795450 - L1MEf LINE L1 -5124 1616 1543 5 908 2452 107 3 6 chr1 42400845 42401173 -154794259 - ORR1A2 LTR MaLR 0 327 1 5 908 352 315 140 23 chr1 42401223 42401444 -154793988 - MER2 DNA MER2_type -69 276 30 5 908 444 337 15 40 chr1 42401960 42402161 -154793271 + MER3 DNA MER1_type 14 209 0 5 908 768 180 0 0 chr1 42402306 42402592 -154792840 + (CA)n Simple_repeat Simple_repeat 1 286 0 5 908 669 269 121 62 chr1 42403249 42403522 -154791910 + B4A SINE B4 4 292 0 5 908 421 275 94 38 chr1 42404940 42405099 -154790333 + B3A SINE B2 1 168 -30 5 908 22 88 0 0 chr1 42405283 42405340 -154790092 + AT_rich Low_complexity Low_complexity 1 57 0 5 908 216 173 0 37 chr1 42405416 42405470 -154789962 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 908 438 308 52 69 chr1 42406172 42406461 -154788971 - MLT1A1 LTR MaLR 0 408 91 5 908 270 0 0 0 chr1 42408396 42408426 -154787006 + (A)n Simple_repeat Simple_repeat 1 30 0 5 908 219 114 0 0 chr1 42409898 42409933 -154785499 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 908 408 117 0 0 chr1 42411830 42411907 -154783525 + (TTTA)n Simple_repeat Simple_repeat 3 79 0 5 908 262 305 112 62 chr1 42414199 42414377 -154781055 - MIRb SINE MIR -81 187 1 5 908 1618 226 39 115 chr1 42414737 42415302 -154780130 - RLTR11A LTR ERVK 0 528 7 5 908 625 327 100 39 chr1 42415711 42416122 -154779310 - LTR16A LTR ERVL -15 436 1 5 908 7068 114 32 5 chr1 42416224 42417341 -154778091 + Lx LINE L1 5502 6648 -6 5 908 1206 82 0 0 chr1 42417465 42417764 -154777668 + (TG)n Simple_repeat Simple_repeat 1 299 0 5 908 416 311 22 50 chr1 42417784 42417923 -154777509 - B3A SINE B2 -63 135 1 5 908 474 157 0 0 chr1 42418319 42418402 -154777030 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 908 506 275 143 15 chr1 42418506 42418709 -154776723 - MER2 DNA MER2_type -115 230 2 5 908 240 364 50 0 chr1 42419071 42419170 -154776262 + MIRm SINE MIR 165 268 -8 5 908 270 0 0 0 chr1 42420138 42420168 -154775264 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 908 222 270 63 0 chr1 42420177 42420240 -154775192 - B1F SINE Alu -60 89 23 5 908 531 0 0 0 chr1 42421025 42421084 -154774348 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 5 908 229 294 67 29 chr1 42421143 42421248 -154774184 + MER103 DNA DNA 14 122 -44 5 908 293 0 0 26 chr1 42421508 42421546 -154773886 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 5 908 21 0 0 0 chr1 42422165 42422186 -154773246 + AT_rich Low_complexity Low_complexity 1 21 0 6 908 780 21 0 0 chr1 42422248 42422342 -154773090 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 908 198 0 0 0 chr1 42423621 42423643 -154771789 + (T)n Simple_repeat Simple_repeat 1 22 0 6 908 327 174 40 10 chr1 42425208 42425307 -154770125 + CT-rich Low_complexity Low_complexity 6 107 0 6 908 717 45 0 0 chr1 42427033 42427122 -154768310 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 908 760 226 18 12 chr1 42427126 42427296 -154768136 - RMER5 LTR ERV1 -15 519 349 6 908 477 244 92 42 chr1 42427294 42427414 -154768018 - MTE2b LTR MaLR -216 163 38 6 908 399 21 0 0 chr1 42427482 42427530 -154767902 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 908 226 269 30 0 chr1 42428040 42428107 -154767325 + LTR33A LTR ERVL 417 485 -35 6 908 332 363 16 0 chr1 42428335 42428459 -154766973 - MER5A DNA MER1_type -61 128 3 6 908 632 211 0 16 chr1 42428799 42428982 -154766450 + (TTG)n Simple_repeat Simple_repeat 1 180 0 6 908 318 359 19 65 chr1 42430142 42430297 -154765135 + MER45A DNA Tip100 8 155 -23 6 908 186 329 125 31 chr1 42430503 42430663 -154764769 + MIRc SINE MIR 82 256 -12 6 908 353 269 32 21 chr1 42430748 42430843 -154764589 - PB1 SINE Alu -17 110 15 6 908 282 39 78 0 chr1 42431069 42431120 -154764312 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 908 294 29 0 0 chr1 42431225 42431260 -154764172 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 908 319 299 13 0 chr1 42431355 42431432 -154764000 + ID4 SINE ID 4 81 -2 6 908 776 219 7 7 chr1 42431543 42431695 -154763737 + Lx8 LINE L1 7062 7213 -260 6 908 261 0 0 0 chr1 42431695 42431724 -154763708 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 908 461 266 83 35 chr1 42431724 42431899 -154763533 + Lx8 LINE L1 7233 7419 -54 6 908 2303 178 68 2 chr1 42431899 42432294 -154763138 - MTC LTR MaLR 0 421 1 6 908 461 266 83 35 chr1 42432294 42432348 -154763084 + Lx8 LINE L1 7420 7473 0 6 908 450 282 128 40 chr1 42432493 42432641 -154762791 + RSINE1 SINE B4 3 163 -2 6 908 482 303 56 33 chr1 42432891 42433106 -154762326 + MamSINE1 SINE tRNA 1 220 -70 6 908 218 255 106 0 chr1 42433346 42433393 -154762039 + B1F1 SINE Alu 5 56 -93 6 908 714 235 0 0 chr1 42434386 42434518 -154760914 + B1_Mur2 SINE Alu 10 141 -8 6 908 1419 187 63 4 chr1 42434519 42434787 -154760645 + Lx4B LINE L1 6465 6748 -310 6 908 276 30 0 0 chr1 42434787 42434820 -154760612 + (CCTG)n Simple_repeat Simple_repeat 1 33 0 6 908 961 332 67 51 chr1 42434820 42435065 -154760367 + Lx2B LINE L1 6745 6985 -15 6 908 414 73 0 0 chr1 42435237 42435292 -154760140 - ORR1B1 LTR MaLR 0 394 340 6 908 35247 23 3 1 chr1 42435292 42440075 -154755357 - L1Md_T LINE L1 -2 6580 1790 6 908 1828 157 6 25 chr1 42440075 42440396 -154755036 - ORR1B1 LTR MaLR -39 355 41 6 908 398 304 74 48 chr1 42440434 42440704 -154754728 + L1MEg LINE L1 1051 1327 -4757 6 908 463 277 47 73 chr1 42440924 42441115 -154754317 + Lx8 LINE L1 7131 7316 -157 6 908 805 323 45 38 chr1 42441797 42442061 -154753371 + B4 SINE B4 4 269 -23 6 908 387 60 0 0 chr1 42442061 42442111 -154753321 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 908 461 340 71 36 chr1 42442551 42442832 -154752600 + B4A SINE B4 2 292 0 6 908 222 172 16 49 chr1 42443042 42443103 -154752329 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 908 3146 78 0 0 chr1 42443127 42443521 -154751911 - L1_Mus1 LINE L1 -127 6440 6047 6 908 972 89 30 0 chr1 42443521 42443656 -154751776 + L1Md_F2 LINE L1 6432 6570 -12 6 908 227 263 230 5 chr1 42445696 42445883 -154749549 + ORR1E LTR MaLR 24 252 -107 6 908 883 26 0 0 chr1 42446537 42446651 -154748781 - B1_Mus1 SINE Alu -1 147 34 6 908 440 295 85 69 chr1 42446972 42447133 -154748299 - L1MDa LINE L1 -3652 2885 2732 6 908 1642 228 27 24 chr1 42447133 42447506 -154747926 + ORR1D1 LTR MaLR 1 374 0 6 908 452 273 86 50 chr1 42447506 42447870 -154747562 - L1MDa LINE L1 -3806 2731 2339 6 908 1155 75 0 13 chr1 42447919 42448068 -154747364 + B1_Mus1 SINE Alu 2 148 0 6 908 458 203 8 0 chr1 42448384 42448512 -154746920 + (TG)n Simple_repeat Simple_repeat 1 129 0 6 908 503 319 135 25 chr1 42448642 42449085 -154746347 - L1MDa LINE L1 -5276 1357 866 6 908 252 306 19 48 chr1 42449457 42449560 -154745872 - L1MDa LINE L1 -6220 413 314 6 908 278 301 103 41 chr1 42449622 42449816 -154745616 - L1MDa LINE L1 -6413 220 15 6 908 535 273 0 53 chr1 42449821 42449972 -154745460 - ID_B1 SINE B4 -1 223 81 6 908 434 176 35 0 chr1 42450931 42451016 -154744416 - B1_Mur1 SINE Alu -15 134 47 6 908 252 59 0 0 chr1 42451028 42451062 -154744370 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 908 2067 142 3 3 chr1 42451241 42451552 -154743880 - RLTR10E LTR ERVK 0 311 1 6 908 1662 102 8 0 chr1 42454446 42454702 -154740730 - MTB LTR MaLR -142 258 1 6 908 21 0 0 0 chr1 42454746 42454767 -154740665 + AT_rich Low_complexity Low_complexity 1 21 0 6 908 409 330 88 10 chr1 42456434 42456639 -154738793 - MER58A DNA MER1_type -3 221 1 6 908 286 214 43 0 chr1 42457788 42457858 -154737574 - L1M3 LINE L1 -1491 4649 4577 6 908 1309 253 115 47 chr1 42457882 42458563 -154736869 + RMER19C LTR ERVK 3 726 -11 6 908 1453 242 110 6 chr1 42458616 42459114 -154736318 - L1_Rod LINE L1 -1399 4448 3899 6 908 865 280 141 48 chr1 42459446 42459986 -154735446 + Lx9 LINE L1 7051 7640 -4 6 908 249 211 57 9 chr1 42460179 42460284 -154735148 + (TA)n Simple_repeat Simple_repeat 2 111 0 6 908 533 208 6 0 chr1 42460397 42460565 -154734867 + (TG)n Simple_repeat Simple_repeat 2 170 0 6 908 253 342 13 0 chr1 42460596 42460675 -154734757 - ID SINE ID -144 80 1 6 908 1103 78 0 0 chr1 42460886 42461028 -154734404 + B1_Mm SINE Alu 5 146 -1 6 908 489 92 20 10 chr1 42461031 42461130 -154734302 + (CAAAA)n Simple_repeat Simple_repeat 1 100 0 6 908 2689 279 105 17 chr1 42461767 42462893 -154732539 - Lx8 LINE L1 -4 7469 6224 6 908 272 300 116 48 chr1 42463210 42463399 -154732033 - Lx8 LINE L1 -1236 6237 6036 6 908 1032 194 19 19 chr1 42464893 42465103 -154730329 - B3 SINE B2 -5 211 2 6 908 188 135 27 0 chr1 42465533 42465570 -154729862 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 6 908 288 281 76 30 chr1 42465579 42465711 -154729721 - B2_Mm2 SINE B2 -57 138 1 6 908 342 0 0 0 chr1 42466032 42466070 -154729362 + (CAGT)n Simple_repeat Simple_repeat 2 39 0 6 908 510 61 0 0 chr1 42466891 42466957 -154728475 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 113 1115 258 102 6 chr1 42467031 42467366 -154728066 + ORR1D2 LTR MaLR 1 367 -3 6 909 333 198 21 21 chr1 42468435 42468528 -154726904 + MLT1A1 LTR MaLR 307 399 -9 6 909 1357 188 90 19 chr1 42470371 42470681 -154724751 - Lx7 LINE L1 0 7696 7365 6 909 337 191 26 17 chr1 42470690 42470807 -154724625 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 909 1865 177 10 0 chr1 42470809 42471108 -154724324 - Lx6 LINE L1 -741 6719 6418 6 909 574 307 46 28 chr1 42471412 42471630 -154723802 + ID_B1 SINE B4 1 222 -2 6 909 201 138 0 0 chr1 42471630 42471659 -154723773 + (GGA)n Simple_repeat Simple_repeat 1 29 0 6 909 932 189 1 4 chr1 42471661 42472357 -154723075 + GA-rich Low_complexity Low_complexity 1 693 0 6 909 393 188 0 65 chr1 42474064 42474218 -154721214 + CT-rich Low_complexity Low_complexity 5 148 0 6 909 324 0 0 0 chr1 42475070 42475106 -154720326 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 909 423 0 0 0 chr1 42475106 42475152 -154720280 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 909 303 318 9 35 chr1 42475583 42475697 -154719735 - MLT2B4 LTR ERVL -376 180 70 6 909 330 239 22 11 chr1 42475870 42475959 -154719473 + MER44D DNA MER2_type 34 123 -582 6 909 700 251 5 33 chr1 42477062 42477272 -154718160 - MER2 DNA MER2_type -55 290 87 6 909 299 177 38 0 chr1 42478067 42478146 -154717286 + Zaphod DNA Tip100 895 976 -3055 6 909 283 273 45 0 chr1 42478152 42478240 -154717192 + Zaphod DNA Tip100 3595 3686 -345 6 909 387 105 0 0 chr1 42478272 42478329 -154717103 + (T)n Simple_repeat Simple_repeat 1 57 0 6 909 1171 62 7 0 chr1 42479439 42479584 -154715848 + B1_Mm SINE Alu 2 147 0 6 909 180 0 0 0 chr1 42479595 42479615 -154715817 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 909 250 333 44 0 chr1 42479669 42479759 -154715673 + PB1D10 SINE Alu 19 112 -5 6 909 196 232 30 20 chr1 42479841 42479942 -154715490 + GA-rich Low_complexity Low_complexity 3 104 0 6 909 636 261 51 36 chr1 42481373 42481568 -154713864 - B3A SINE B2 0 198 1 6 909 396 91 0 0 chr1 42482414 42482480 -154712952 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 909 544 301 51 28 chr1 42482495 42482605 -154712827 - Lx8 LINE L1 -127 7346 7230 6 909 441 0 0 0 chr1 42482605 42482654 -154712778 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 909 544 301 51 28 chr1 42482654 42482721 -154712711 - Lx8 LINE L1 -244 7229 7165 6 909 277 55 0 69 chr1 42483371 42483429 -154712003 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 909 303 28 0 0 chr1 42483507 42483543 -154711889 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 909 243 0 0 0 chr1 42483543 42483569 -154711863 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 909 288 254 16 58 chr1 42483600 42483788 -154711644 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 909 291 181 7 48 chr1 42483851 42483996 -154711436 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 909 227 269 119 0 chr1 42484132 42484199 -154711233 + L1MA6 LINE L1 6192 6266 -34 6 909 189 156 0 0 chr1 42484985 42485017 -154710415 + MER5B DNA MER1_type 18 49 -129 6 909 188 0 74 0 chr1 42485523 42485550 -154709882 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 909 338 214 0 12 chr1 42485699 42485784 -154709648 + GA-rich Low_complexity Low_complexity 5 88 0 6 909 259 268 0 40 chr1 42486836 42486910 -154708522 + (CATG)n Simple_repeat Simple_repeat 3 73 0 6 909 853 66 8 0 chr1 42487228 42487349 -154708083 - L1_Mus1 LINE L1 0 6567 6446 6 909 448 345 108 26 chr1 42488055 42488287 -154707145 - MLT1C LTR MaLR -164 303 53 6 909 1967 166 91 162 chr1 42489101 42489705 -154705727 + RLTR31_Mm LTR ERVK 1 561 0 7 909 213 132 0 0 chr1 42489746 42489784 -154705648 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 909 254 296 51 17 chr1 42489914 42490031 -154705401 - MIR SINE MIR -56 206 86 7 909 471 211 9 19 chr1 42490147 42490253 -154705179 - MTD LTR MaLR -311 108 4 7 909 396 0 0 0 chr1 42490490 42490534 -154704898 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 909 237 98 0 0 chr1 42490539 42490580 -154704852 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 7 909 460 280 8 8 chr1 42490581 42490707 -154704725 + RSINE1 SINE B4 8 133 -32 7 909 372 22 0 0 chr1 42490707 42490752 -154704680 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 909 204 40 0 0 chr1 42490764 42490789 -154704643 + (CCA)n Simple_repeat Simple_repeat 1 25 0 7 909 216 97 0 0 chr1 42490812 42490843 -154704589 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 909 243 0 0 0 chr1 42490870 42490897 -154704535 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 909 976 40 111 0 chr1 42490900 42491026 -154704406 - B1_Mm SINE Alu -6 141 2 7 909 216 140 34 34 chr1 42491909 42491968 -154703464 + (CAAAC)n Simple_repeat Simple_repeat 4 62 0 7 909 262 263 13 0 chr1 42492240 42492316 -154703116 + B2_Mm2 SINE B2 5 81 -114 7 909 1918 211 35 46 chr1 42492304 42492765 -154702667 + RMER19C LTR ERVK 156 611 0 7 909 2253 121 12 0 chr1 42493000 42493323 -154702109 + ORR1A2 LTR MaLR 1 327 0 7 909 212 277 89 0 chr1 42493390 42493491 -154701941 - MER5A DNA MER1_type 0 189 80 7 909 2604 93 27 39 chr1 42493513 42493927 -154701505 + RLTR9E LTR ERVK 1 409 0 7 909 25 51 0 0 chr1 42494521 42494560 -154700872 + AT_rich Low_complexity Low_complexity 1 39 0 7 909 378 0 0 0 chr1 42494560 42494602 -154700830 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 909 218 306 13 65 chr1 42494611 42494688 -154700744 - RSINE1 SINE B4 -91 74 2 7 909 257 270 0 26 chr1 42494694 42494770 -154700662 - PB1D10 SINE Alu -1 116 43 7 909 7162 53 3 2 chr1 42494787 42495667 -154699765 - L1Md_F2 LINE L1 -1 6581 5701 7 909 473 162 182 0 chr1 42495859 42495958 -154699474 - B1F2 SINE Alu 0 149 33 7 909 932 292 84 24 chr1 42496197 42496579 -154698853 - Lx7 LINE L1 -377 7319 6915 7 909 715 223 45 0 chr1 42496566 42496723 -154698709 + Lx8 LINE L1 6651 6814 -659 7 909 339 25 0 0 chr1 42497856 42497896 -154697536 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 909 494 173 21 28 chr1 42498834 42498977 -154696455 + GA-rich Low_complexity Low_complexity 1 142 0 7 909 234 146 0 40 chr1 42498984 42499034 -154696398 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 7 909 486 33 0 0 chr1 42499035 42499095 -154696337 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 909 1310 67 0 6 chr1 42499292 42499471 -154695961 + (TTTTC)n Simple_repeat Simple_repeat 1 178 0 7 909 3686 88 38 9 chr1 42499473 42500000 -154695432 - L1_Mus3 LINE L1 0 6638 6097 7 909 3538 85 3 1 chr1 42500019 42500609 -154694823 + L1_Mus2 LINE L1 5406 6002 -971 1 909 544 266 143 94 chr1 42500693 42500959 -154694473 - B4 SINE B4 -12 280 2 2 909 278 288 47 100 chr1 42501055 42501225 -154694207 + RSINE1 SINE B4 5 165 0 3 909 192 77 0 0 chr1 42501227 42501253 -154694179 + (CATG)n Simple_repeat Simple_repeat 3 28 0 4 909 28 29 0 0 chr1 42501254 42501289 -154694143 + AT_rich Low_complexity Low_complexity 1 35 0 5 909 243 0 0 0 chr1 42501843 42501870 -154693562 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 909 22 0 0 0 chr1 42502025 42502047 -154693385 + AT_rich Low_complexity Low_complexity 1 22 0 7 909 351 60 0 0 chr1 42502079 42502129 -154693303 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 909 2094 298 91 26 chr1 42502439 42502509 -154692923 - Lx8 LINE L1 -446 7027 6954 9 909 2401 175 2 17 chr1 42502509 42502922 -154692510 - MTB_Mm LTR MaLR 0 407 1 1 909 2094 298 91 26 chr1 42502922 42503698 -154691734 - Lx8 LINE L1 -520 6953 6126 9 909 226 290 59 20 chr1 42504102 42504204 -154691228 - MER21B LTR ERV1 -150 713 608 1 909 721 332 41 44 chr1 42504434 42504705 -154690727 - MER21B LTR ERV1 -575 288 19 1 909 2616 203 184 24 chr1 42504751 42505386 -154690046 + RMER19A LTR ERVK 1 737 0 1 909 260 253 67 0 chr1 42506550 42506625 -154688807 - MIRb SINE MIR -54 214 135 1 909 296 323 30 12 chr1 42507464 42507630 -154687802 + L1MDa LINE L1 112 280 -6353 1 909 505 359 51 34 chr1 42507684 42508050 -154687382 + L1MDa LINE L1 380 834 -5799 1 909 871 152 40 0 chr1 42508366 42508517 -154686915 - ORR1C2 LTR MaLR 0 384 228 1 909 343 70 0 0 chr1 42508503 42508546 -154686886 + ORR1C1 LTR MaLR 334 376 -2 1 909 336 312 54 41 chr1 42508548 42508695 -154686737 + L1MDa LINE L1 1667 1815 -4818 1 909 2096 46 0 0 chr1 42508747 42508986 -154686446 + L1Md_T LINE L1 6344 6582 0 1 909 876 243 148 34 chr1 42508996 42509320 -154686112 - ORR1D1 LTR MaLR 0 374 14 1 909 513 0 0 0 chr1 42509419 42509476 -154685956 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 909 414 273 121 6 chr1 42509587 42509760 -154685672 + L1MDa LINE L1 1996 2188 -4445 1 909 358 289 111 19 chr1 42509886 42510094 -154685338 + L1MDa LINE L1 2383 2609 -4024 1 909 484 305 80 10 chr1 42510100 42510299 -154685133 - MLT1D LTR MaLR -6 499 287 2 909 391 322 51 0 chr1 42510474 42510592 -154684840 - B4A SINE B4 -138 154 31 2 909 445 249 101 37 chr1 42510602 42510819 -154684613 + RLTR42-int LTR ERVK 1175 1405 -4117 2 909 290 360 77 27 chr1 42511300 42511520 -154683912 - MLT1D LTR MaLR -269 236 6 2 909 180 152 0 0 chr1 42512730 42512763 -154682669 + T-rich Low_complexity Low_complexity 2 34 0 2 909 590 200 72 65 chr1 42512782 42512921 -154682511 + B1_Mur1 SINE Alu 4 143 -6 2 909 302 321 152 29 chr1 42512945 42513083 -154682349 + HAL1-3A_ME LINE L1 2284 2438 -420 2 909 1038 62 16 43 chr1 42513092 42513276 -154682156 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 2 909 404 275 64 0 chr1 42513300 42513409 -154682023 + B2_Mm2 SINE B2 10 125 -70 2 909 208 135 0 0 chr1 42513755 42513792 -154681640 + (A)n Simple_repeat Simple_repeat 1 37 0 2 909 983 274 77 12 chr1 42513981 42514317 -154681115 - MER47A DNA MER2_type -8 358 1 2 909 242 328 119 70 chr1 42514403 42514849 -154680583 + L2a LINE L2 2957 3424 -2 3 909 429 280 69 94 chr1 42515221 42515509 -154679923 + L1MB2 LINE L1 5602 5882 -289 3 909 330 260 93 10 chr1 42515516 42515613 -154679819 + ID_B1 SINE B4 91 195 -29 3 909 6015 71 22 1 chr1 42515692 42516429 -154679003 - L1_Mus2 LINE L1 0 6566 5815 3 909 387 0 0 0 chr1 42516430 42516473 -154678959 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 909 237 103 26 0 chr1 42516473 42516512 -154678920 + MT2A LTR ERVL 494 533 0 3 909 376 311 109 56 chr1 42516522 42516574 -154678858 + Lx8 LINE L1 5500 5549 -331 3 909 4806 59 0 5 chr1 42516574 42517138 -154678294 + L1_Mus1 LINE L1 6005 6565 -2 3 909 415 284 74 57 chr1 42517138 42517351 -154678081 + Lx8 LINE L1 5550 5782 -1914 3 909 8374 148 13 29 chr1 42517496 42518918 -154676514 + L1_Mm LINE L1 4485 5883 0 3 909 2171 169 134 61 chr1 42518949 42519472 -154675960 + Lx LINE L1 6094 6654 0 3 909 536 267 135 132 chr1 42519813 42520089 -154675343 + B4A SINE B4 3 283 -9 4 909 3378 63 5 0 chr1 42520089 42520483 -154674949 - MTB LTR MaLR -4 396 1 4 909 536 267 135 132 chr1 42520483 42520495 -154674937 + B4A SINE B4 284 292 0 4 909 225 395 96 15 chr1 42521615 42521751 -154673681 - MLT1H1 LTR MaLR -353 202 56 4 909 801 190 196 21 chr1 42521801 42521957 -154673475 + Lx9 LINE L1 7313 7497 -147 4 909 396 0 0 0 chr1 42521957 42522001 -154673431 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 909 801 190 196 21 chr1 42522001 42522124 -154673308 + Lx9 LINE L1 7498 7640 -4 4 909 434 316 325 27 chr1 42526948 42527240 -154668192 - MER47B DNA MER2_type -1 417 39 4 909 25 0 0 0 chr1 42528620 42528645 -154666787 + AT_rich Low_complexity Low_complexity 1 25 0 4 909 198 0 0 0 chr1 42529784 42529806 -154665626 + (T)n Simple_repeat Simple_repeat 1 22 0 4 909 411 21 0 0 chr1 42531051 42531099 -154664333 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 909 233 306 27 40 chr1 42531315 42531390 -154664042 - MIRm SINE MIR -11 265 192 4 909 188 143 0 23 chr1 42531648 42531691 -154663741 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5 909 182 62 31 0 chr1 42532060 42532092 -154663340 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 5 909 375 23 0 0 chr1 42533091 42533135 -154662297 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 909 210 71 0 0 chr1 42534212 42534240 -154661192 + (T)n Simple_repeat Simple_repeat 1 28 0 5 909 1210 95 0 0 chr1 42534242 42534389 -154661043 - B1_Mus2 SINE Alu 0 147 1 5 909 570 159 9 26 chr1 42534963 42535079 -154660353 - MER2 DNA MER2_type -136 209 96 5 909 228 258 62 46 chr1 42535344 42535409 -154660023 + MTE2a LTR MaLR 262 327 -52 5 909 547 109 10 19 chr1 42535421 42535524 -154659908 + (CAGA)n Simple_repeat Simple_repeat 3 104 0 5 909 180 250 16 82 chr1 42535587 42535648 -154659784 - L2 LINE L2 -985 2434 2378 5 909 242 252 144 36 chr1 42535722 42535833 -154659599 + MER2 DNA MER2_type 86 208 -137 5 909 393 229 39 0 chr1 42535939 42536092 -154659340 + (TATG)n Simple_repeat Simple_repeat 1 159 0 6 909 234 0 0 0 chr1 42536896 42536922 -154658510 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 909 282 116 0 0 chr1 42538566 42538609 -154656823 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 6 909 267 299 149 0 chr1 42539401 42539468 -154655964 + B4 SINE B4 2 78 -214 6 909 392 325 0 50 chr1 42539769 42539889 -154655543 - B3A SINE B2 -79 119 6 6 909 229 316 25 0 chr1 42540430 42540509 -154654923 + ID4_ SINE ID 3 83 0 6 909 876 246 121 67 chr1 42540531 42541150 -154654282 + L1MB3 LINE L1 5458 6175 -8 6 909 621 253 22 87 chr1 42541365 42541536 -154653896 - RSINE1 SINE B4 0 165 2 6 909 219 25 75 0 chr1 42542013 42542053 -154653379 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 909 241 353 15 0 chr1 42543031 42543099 -154652333 - ID SINE ID -146 78 10 6 909 311 300 0 43 chr1 42543109 42543224 -154652208 - PB1 SINE Alu 0 127 18 7 909 182 362 83 37 chr1 42543448 42543689 -154651743 + L2 LINE L2 2618 2869 -550 7 909 1926 284 58 13 chr1 42551109 42551725 -154643707 + RCHARR1 DNA MER1_type 14 657 -317 7 909 377 235 16 57 chr1 42552421 42552543 -154642889 + MIRb SINE MIR 68 184 -84 7 909 483 275 119 0 chr1 42553622 42553782 -154641650 + B3A SINE B2 2 180 -18 7 909 384 103 0 0 chr1 42553795 42553853 -154641579 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 909 198 0 0 0 chr1 42554671 42554693 -154640739 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 909 189 0 0 0 chr1 42554952 42554973 -154640459 + (TA)n Simple_repeat Simple_repeat 2 22 0 7 909 787 152 18 0 chr1 42555012 42555176 -154640256 + Lx9 LINE L1 7477 7643 -1 7 909 280 183 117 0 chr1 42555362 42555422 -154640010 + Helitron3Na_Mam RC Helitron 360 426 -60 7 909 213 39 0 0 chr1 42555428 42555454 -154639978 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 8 909 225 0 0 0 chr1 42557041 42557066 -154638366 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 8 909 240 169 15 15 chr1 42557094 42557160 -154638272 + T-rich Low_complexity Low_complexity 5 70 0 8 909 495 274 64 6 chr1 42557646 42557779 -154637653 + B3A SINE B2 32 173 -25 8 909 424 0 36 0 chr1 42557779 42557835 -154637597 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 909 495 276 50 35 chr1 42557835 42557871 -154637561 + B3A SINE B2 154 197 -1 8 909 279 0 0 0 chr1 42557943 42557974 -154637458 + (TA)n Simple_repeat Simple_repeat 1 31 0 8 909 231 175 0 0 chr1 42558461 42558518 -154636914 + CT-rich Low_complexity Low_complexity 1 57 0 8 909 387 311 29 29 chr1 42559977 42560116 -154635316 + RSINE1 SINE B4 5 143 -22 8 909 204 37 111 0 chr1 42560947 42561001 -154634431 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 909 767 82 202 16 chr1 42562734 42562858 -154632574 + B1_Mus1 SINE Alu 1 147 -1 8 909 782 149 46 66 chr1 42562972 42563123 -154632309 + B1_Mur4 SINE Alu 3 150 0 9 909 649 235 0 0 chr1 42563397 42563529 -154631903 + L1M5 LINE L1 5595 5726 -398 9 909 1167 109 0 0 chr1 42563529 42563703 -154631729 + (GAA)n Simple_repeat Simple_repeat 3 176 0 9 909 708 213 8 4 chr1 42563703 42563939 -154631493 + GA-rich Low_complexity Low_complexity 1 237 0 9 909 603 0 0 0 chr1 42564669 42564736 -154630696 + (TA)n Simple_repeat Simple_repeat 2 68 0 9 909 378 0 0 0 chr1 42565611 42565653 -154629779 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 909 1307 84 4 114 chr1 42565653 42565881 -154629551 - L1_Mus2 LINE L1 -9 6557 6355 9 909 1696 65 5 0 chr1 42565881 42566097 -154629335 + L1_Mus2 LINE L1 6121 6337 -229 9 909 228 338 106 14 chr1 42567151 42567292 -154628140 - MLT1A0 LTR MaLR -193 172 19 9 909 299 185 25 0 chr1 42567293 42567374 -154628058 + (CATA)n Simple_repeat Simple_repeat 2 84 0 9 909 684 195 3 6 chr1 42567416 42567743 -154627689 + (CATA)n Simple_repeat Simple_repeat 1 326 0 9 909 324 293 50 41 chr1 42567767 42567888 -154627544 - B4A SINE B4 -160 132 11 9 909 222 309 44 0 chr1 42568691 42568759 -154626673 + ID4 SINE ID 11 81 -2 1 909 1342 94 0 59 chr1 42570260 42570464 -154624968 + B2_Mm2 SINE B2 1 192 -3 1 909 3345 58 0 2 chr1 42570896 42571297 -154624135 + MTB LTR MaLR 1 400 0 1 909 840 205 14 72 chr1 42571323 42571544 -154623888 + B3 SINE B2 1 208 -8 1 909 406 245 61 35 chr1 42571905 42572019 -154623413 + PB1D10 SINE Alu 1 117 0 1 909 204 97 0 0 chr1 42572022 42572053 -154623379 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1 909 1203 54 0 0 chr1 42572711 42572858 -154622574 - B1_Mus2 SINE Alu 0 147 1 1 909 2191 138 0 15 chr1 42573134 42573466 -154621966 + ORR1A2 LTR MaLR 1 327 0 1 909 239 268 18 0 chr1 42573587 42573643 -154621789 - MT2A LTR ERVL -73 460 404 1 909 3283 34 26 0 chr1 42573666 42574052 -154621380 + MTA_Mm LTR MaLR 1 396 0 1 909 902 169 42 0 chr1 42574060 42574226 -154621206 - MT2A LTR ERVL -230 303 131 1 909 1807 133 36 13 chr1 42574226 42574531 -154620901 + Lx LINE L1 6343 6654 0 1 909 376 214 12 0 chr1 42574533 42574617 -154620815 - MT2A LTR ERVL -445 88 4 1 909 7846 135 5 1 chr1 42574628 42576213 -154619219 - L1_Mus4 LINE L1 -445 6191 4598 1 909 2558 107 60 18 chr1 42576213 42576614 -154618818 + Lx LINE L1 6224 6641 -13 1 909 2056 130 6 3 chr1 42576898 42577223 -154618209 - Lx2 LINE L1 0 6997 6672 1 909 311 119 149 0 chr1 42577547 42577614 -154617818 + Lx LINE L1 6574 6650 -4 1 909 2069 78 51 3 chr1 42577775 42578071 -154617361 + L1_Mus3 LINE L1 6322 6631 -7 1 909 250 268 0 16 chr1 42578449 42578574 -154616858 + (TG)n Simple_repeat Simple_repeat 1 123 0 1 909 860 206 3 0 chr1 42578647 42578933 -154616499 + (TG)n Simple_repeat Simple_repeat 1 287 0 1 909 542 324 57 72 chr1 42579039 42579458 -154615974 - MT2A LTR ERVL -101 432 20 1 909 298 345 8 41 chr1 42580362 42580483 -154614949 + B3A SINE B2 63 179 -19 1 909 2612 223 39 9 chr1 42582592 42583131 -154612301 + Lx6 LINE L1 6906 7460 0 1 909 458 293 8 8 chr1 42583214 42583331 -154612101 - PB1D7 SINE Alu 0 120 4 1 909 3397 33 5 2 chr1 42583351 42583746 -154611686 + MTA_Mm LTR MaLR 1 396 0 1 909 615 247 53 90 chr1 42584124 42584369 -154611063 - ORSL DNA Tip100 -16 259 24 1 909 453 256 8 16 chr1 42585741 42585864 -154609568 + L1MB3 LINE L1 6050 6171 -12 1 909 764 293 97 34 chr1 42586460 42586905 -154608527 - L1MB4 LINE L1 -8 6172 5700 1 909 1064 265 122 26 chr1 42587046 42587538 -154607894 + L1MA6 LINE L1 5713 6251 -49 1 909 21 0 0 0 chr1 42588153 42588174 -154607258 + AT_rich Low_complexity Low_complexity 1 21 0 1 909 270 0 0 0 chr1 42588542 42588572 -154606860 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 1 909 461 218 18 6 chr1 42588575 42588746 -154606686 + (TA)n Simple_repeat Simple_repeat 1 173 0 1 909 272 155 0 14 chr1 42590789 42590861 -154604571 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1 909 303 340 61 49 chr1 42590947 42591293 -154604139 - L1MC LINE L1 -2075 5807 5458 1 909 774 288 103 52 chr1 42591339 42591428 -154604004 - B4A SINE B4 0 292 215 1 909 1855 174 43 60 chr1 42591428 42591825 -154603607 - ORR1B1 LTR MaLR 0 394 5 1 909 774 288 103 52 chr1 42591825 42592006 -154603426 - B4A SINE B4 -78 214 8 1 909 305 292 83 15 chr1 42593024 42593156 -154602276 + MER45A DNA Tip100 14 154 -24 1 909 324 221 29 0 chr1 42593402 42593470 -154601962 - ID4_ SINE ID -7 76 7 1 909 363 286 39 31 chr1 42593491 42593621 -154601811 - B1F SINE Alu -8 141 11 1 909 180 0 0 0 chr1 42594630 42594650 -154600782 + (T)n Simple_repeat Simple_repeat 1 20 0 1 909 21 36 0 0 chr1 42594995 42595023 -154600409 + AT_rich Low_complexity Low_complexity 1 28 0 1 909 417 255 133 33 chr1 42595049 42595199 -154600233 - B3A SINE B2 -33 165 1 1 909 203 81 81 0 chr1 42595782 42595819 -154599613 + T-rich Low_complexity Low_complexity 2 41 0 1 910 294 171 0 0 chr1 42598408 42598478 -154596954 + GA-rich Low_complexity Low_complexity 1 70 0 1 910 192 77 0 0 chr1 42601132 42601158 -154594274 + (T)n Simple_repeat Simple_repeat 1 26 0 1 910 631 220 27 46 chr1 42601231 42601450 -154593982 - Lx9 LINE L1 -5 7639 7425 1 910 195 237 0 0 chr1 42601897 42601935 -154593497 + L2a LINE L2 3380 3417 -9 1 910 364 271 20 50 chr1 42601981 42602082 -154593350 + RSINE1 SINE B4 44 141 -24 1 910 342 0 0 0 chr1 42602082 42602120 -154593312 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 910 282 56 0 0 chr1 42602120 42602155 -154593277 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 910 385 300 14 7 chr1 42602382 42602523 -154592909 - HAL1-2a_MD LINE L1 -538 2486 2345 1 910 742 94 17 0 chr1 42602544 42602661 -154592771 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 910 626 191 0 7 chr1 42602766 42602903 -154592529 + (ATG)n Simple_repeat Simple_repeat 1 136 0 1 910 822 202 0 0 chr1 42602917 42603095 -154592337 + (ATG)n Simple_repeat Simple_repeat 1 178 0 1 910 230 280 0 0 chr1 42603095 42603145 -154592287 + (ATGGTG)n Simple_repeat Simple_repeat 2 51 0 1 910 513 277 48 41 chr1 42604075 42604222 -154591210 + RSINE1 SINE B4 4 151 -14 1 910 335 41 0 20 chr1 42604229 42604279 -154591153 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 910 546 16 0 0 chr1 42604279 42604341 -154591091 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 910 214 288 135 0 chr1 42604980 42605091 -154590341 - L2a LINE L2 0 3426 3301 1 910 3466 178 27 31 chr1 42605378 42606080 -154589352 + Lx4B LINE L1 6353 7051 -7 1 910 23 0 0 0 chr1 42606080 42606103 -154589329 + AT_rich Low_complexity Low_complexity 1 23 0 1 910 2172 176 30 0 chr1 42606164 42606561 -154588871 - MTC LTR MaLR -8 413 5 1 910 381 22 0 0 chr1 42606813 42606859 -154588573 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 910 28 29 0 0 chr1 42606962 42606997 -154588435 + AT_rich Low_complexity Low_complexity 1 35 0 1 910 377 262 74 1 chr1 42607321 42607444 -154587988 - B1_Mur1 SINE Alu -6 143 12 1 910 4510 64 22 7 chr1 42607453 42608035 -154587397 - L1Md_F2 LINE L1 0 6582 5992 1 910 935 276 9 0 chr1 42609024 42609238 -154586194 + B3 SINE B2 1 216 0 1 910 340 281 10 0 chr1 42609539 42609635 -154585797 + B4 SINE B4 1 97 -195 1 910 1537 279 84 12 chr1 42609635 42610121 -154585311 + Lx7 LINE L1 6758 7278 -418 1 910 660 237 0 0 chr1 42610165 42610542 -154584890 + (TG)n Simple_repeat Simple_repeat 1 377 0 1 910 242 284 91 9 chr1 42610641 42610751 -154584681 + Lx7 LINE L1 7578 7696 0 1 910 386 359 65 11 chr1 42610794 42610980 -154584452 + B4 SINE B4 82 277 -15 1 910 357 97 42 0 chr1 42611322 42611394 -154584038 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 910 259 378 45 29 chr1 42611430 42611675 -154583757 + ERVL-E-int LTR ERVL 511 759 -4908 1 910 255 268 108 12 chr1 42611849 42611932 -154583500 + PB1D7 SINE Alu 22 112 -8 1 910 234 245 19 19 chr1 42611929 42611983 -154583449 + ID4 SINE ID 26 79 -4 1 910 247 146 32 53 chr1 42612537 42612631 -154582801 + GA-rich Low_complexity Low_complexity 1 92 0 1 910 2417 99 6 19 chr1 42612756 42613115 -154582317 - L1_Mus3 LINE L1 -12 6626 6273 1 910 1824 156 6 58 chr1 42613125 42613472 -154581960 - ORR1A4 LTR MaLR 0 329 1 1 910 23 0 0 0 chr1 42613483 42613506 -154581926 + AT_rich Low_complexity Low_complexity 1 23 0 1 910 216 0 0 0 chr1 42613680 42613704 -154581728 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 910 654 13 0 0 chr1 42613717 42613792 -154581640 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1 910 25 31 0 0 chr1 42613873 42613905 -154581527 + AT_rich Low_complexity Low_complexity 1 32 0 1 910 212 308 0 0 chr1 42613905 42613957 -154581475 + ID4 SINE ID 3 54 -29 1 910 2002 152 29 3 chr1 42614117 42614467 -154580965 - RLTR15 LTR ERVK 0 359 1 1 910 316 317 67 0 chr1 42614587 42614707 -154580725 + ERVL-E-int LTR ERVL 1898 2025 -3689 1 910 446 348 96 13 chr1 42614859 42615173 -154580259 + ERVL-E-int LTR ERVL 2244 2583 -3084 1 910 658 330 79 36 chr1 42615365 42615833 -154579599 + ERVL-E-int LTR ERVL 2886 3373 -2294 1 910 256 312 27 9 chr1 42617595 42617705 -154577727 + L1MD LINE L1 5538 5649 -593 1 910 408 136 0 0 chr1 42617717 42617798 -154577634 - Lx4A LINE L1 -1 7057 6977 1 910 392 246 57 48 chr1 42617822 42617946 -154577486 + Lx9 LINE L1 5781 5905 -1739 1 910 1492 146 95 7 chr1 42619333 42619616 -154575816 - MTC LTR MaLR -8 413 106 1 910 1218 255 57 39 chr1 42619618 42619844 -154575588 + Lx6 LINE L1 7094 7314 -146 1 910 423 0 0 0 chr1 42619844 42619891 -154575541 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 910 369 0 0 0 chr1 42619891 42619931 -154575501 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 910 1218 255 57 39 chr1 42619931 42620037 -154575395 + Lx6 LINE L1 7315 7432 -28 1 910 213 94 0 0 chr1 42620071 42620103 -154575329 + (GAA)n Simple_repeat Simple_repeat 1 32 0 1 910 1170 77 0 0 chr1 42620145 42620288 -154575144 - B1_Mus1 SINE Alu -5 143 1 1 910 466 189 11 0 chr1 42620289 42620384 -154575048 - MTC LTR MaLR -323 98 3 1 910 280 246 66 66 chr1 42621708 42621830 -154573602 + MLT1A LTR MaLR 240 361 -13 1 910 531 288 27 69 chr1 42622386 42622647 -154572785 + MLT1B LTR MaLR 73 322 -68 1 910 229 247 58 23 chr1 42623171 42623258 -154572174 - Lx9 LINE L1 -6 7638 7549 1 910 345 269 21 11 chr1 42623259 42623353 -154572079 - Lx9 LINE L1 -221 7423 7329 1 910 1039 205 15 0 chr1 42623390 42623585 -154571847 + Lx9 LINE L1 7066 7263 -381 1 910 380 213 0 13 chr1 42624323 42624399 -154571033 + B1_Mur1 SINE Alu 75 149 0 1 910 453 19 0 0 chr1 42624904 42624958 -154570474 + (TTG)n Simple_repeat Simple_repeat 2 55 0 1 910 869 93 8 0 chr1 42625399 42625528 -154569904 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 1 910 2751 91 0 5 chr1 42625541 42625940 -154569492 - MTB_Mm LTR MaLR -1 406 10 1 910 278 347 129 45 chr1 42626224 42626426 -154569006 + MLT1D LTR MaLR 278 496 -9 1 910 21 36 0 0 chr1 42630382 42630410 -154565022 + AT_rich Low_complexity Low_complexity 1 28 0 1 910 9096 144 101 29 chr1 42630810 42632925 -154562507 + L1_Mur2 LINE L1 558 2881 -2996 1 910 372 301 154 18 chr1 42633090 42633418 -154562014 + Lx6 LINE L1 6566 7160 -300 2 910 1031 227 62 21 chr1 42633633 42633876 -154561556 + Lx6 LINE L1 7182 7434 -26 2 910 380 341 57 45 chr1 42634212 42634476 -154560956 + B4A SINE B4 10 276 -16 2 910 249 33 0 0 chr1 42634490 42634520 -154560912 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 910 351 113 0 0 chr1 42634516 42634569 -154560863 + (GGA)n Simple_repeat Simple_repeat 2 54 0 2 910 486 241 108 92 chr1 42635665 42635991 -154559441 + MLT1A LTR MaLR 5 376 -32 2 910 1038 233 23 5 chr1 42637075 42637295 -154558137 - Lx9 LINE L1 -269 7375 7152 2 910 413 139 25 0 chr1 42637296 42637375 -154558057 + Lx9 LINE L1 7378 7458 -186 2 910 243 0 0 0 chr1 42637382 42637409 -154558023 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 910 620 127 8 17 chr1 42637413 42637533 -154557899 + Lx9 LINE L1 7520 7638 -6 2 910 327 234 0 13 chr1 42638939 42639017 -154556415 + MTC LTR MaLR 49 125 -296 2 910 556 257 183 16 chr1 42639375 42639632 -154555800 - RMER15 LTR ERVL -1 574 275 2 910 459 0 0 0 chr1 42642512 42642563 -154552869 + (TTA)n Simple_repeat Simple_repeat 3 53 0 2 910 447 19 0 0 chr1 42643453 42643505 -154551927 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 910 2962 38 5 11 chr1 42643623 42643991 -154551441 - L1Md_F3 LINE L1 0 6584 6219 2 910 815 11 0 0 chr1 42643992 42644084 -154551348 - L1Md_F3 LINE L1 -564 6020 5929 2 910 211 286 54 0 chr1 42644202 42644258 -154551174 - MIRm SINE MIR -99 177 119 2 910 203 102 82 0 chr1 42644370 42644419 -154551013 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 910 3252 43 8 0 chr1 42644469 42644862 -154550570 + MTA_Mm LTR MaLR 1 396 0 2 910 261 0 0 0 chr1 42645332 42645361 -154550071 + (A)n Simple_repeat Simple_repeat 1 29 0 2 910 22 0 0 0 chr1 42645788 42645810 -154549622 + GC_rich Low_complexity Low_complexity 1 22 0 2 910 205 237 51 0 chr1 42646719 42646778 -154548654 + CT-rich Low_complexity Low_complexity 3 64 0 2 910 221 274 0 0 chr1 42647307 42647358 -154548074 - PB1D9 SINE Alu -65 55 5 2 910 1310 252 145 61 chr1 42647907 42648431 -154547001 - Lx8 LINE L1 -248 7225 6658 2 910 276 232 42 28 chr1 42649098 42649169 -154546263 + B4 SINE B4 7 78 -214 2 910 409 331 14 35 chr1 42649404 42649548 -154545884 + RSINE1 SINE B4 3 143 -22 2 910 268 295 0 60 chr1 42651172 42651255 -154544177 - B4 SINE B4 0 292 215 2 910 343 292 78 45 chr1 42651249 42651298 -154544134 - B2_Mm1a SINE B2 -6 187 142 2 910 369 0 0 0 chr1 42651298 42651339 -154544093 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 910 595 255 9 1 chr1 42651339 42651468 -154543964 - B3A SINE B2 -52 141 3 2 910 373 310 9 0 chr1 42651476 42651589 -154543843 - B4A SINE B4 -73 219 106 2 910 1348 188 0 70 chr1 42651674 42651760 -154543672 - ORR1D1 LTR MaLR -61 313 214 2 910 207 0 0 0 chr1 42651760 42651783 -154543649 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 2 910 1348 192 60 30 chr1 42651783 42652010 -154543422 - ORR1D1 LTR MaLR -131 243 6 2 910 337 318 14 64 chr1 42652099 42652240 -154543192 + MER2B DNA MER2_type 186 319 -17 2 910 1711 201 242 11 chr1 42652472 42652897 -154542535 + RMER15 LTR ERVL 1 516 -59 2 910 414 0 0 0 chr1 42652897 42652943 -154542489 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 910 243 0 0 0 chr1 42652949 42652976 -154542456 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 910 1711 201 242 11 chr1 42652976 42653010 -154542422 + RMER15 LTR ERVL 542 575 0 2 910 533 144 25 8 chr1 42654940 42655059 -154540373 + CT-rich Low_complexity Low_complexity 1 121 0 2 910 513 0 0 0 chr1 42655250 42655307 -154540125 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 910 441 54 0 0 chr1 42655581 42655637 -154539795 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 910 21 0 0 0 chr1 42655967 42655988 -154539444 + AT_rich Low_complexity Low_complexity 1 21 0 2 910 357 322 67 14 chr1 42657051 42657259 -154538173 + L1MA5 LINE L1 6044 6262 -38 2 910 312 247 0 0 chr1 42657672 42657757 -154537675 + GA-rich Low_complexity Low_complexity 2 86 0 2 910 237 36 0 0 chr1 42658547 42658575 -154536857 + L1_Mur2 LINE L1 3499 3526 -2351 2 910 8390 32 0 1 chr1 42658575 42659545 -154535887 - L1Md_A LINE L1 0 6582 5614 2 910 642 180 6 27 chr1 42659823 42660006 -154535426 + CT-rich Low_complexity Low_complexity 2 180 0 2 910 489 143 33 0 chr1 42660062 42660153 -154535279 - ORR1A1 LTR MaLR -244 102 9 2 910 405 0 0 0 chr1 42660415 42660460 -154534972 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 910 210 333 0 0 chr1 42661369 42661435 -154533997 + T-rich Low_complexity Low_complexity 1 66 0 2 910 231 277 0 0 chr1 42661381 42661428 -154534004 + polypyrimidine Low_complexity Low_complexity 2 48 0 2 910 457 277 0 6 chr1 42662893 42663049 -154532383 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 910 258 193 132 33 chr1 42663213 42663304 -154532128 + MLT1I LTR MaLR 287 386 -25 2 910 513 289 352 11 chr1 42663426 42663696 -154531736 + MLT1A LTR MaLR 1 362 -12 2 910 325 257 51 77 chr1 42664045 42664201 -154531231 - ORR1E LTR MaLR -169 190 39 2 910 465 129 0 0 chr1 42664328 42664421 -154531011 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 910 288 0 0 0 chr1 42664532 42664564 -154530868 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 910 270 0 0 0 chr1 42664755 42664785 -154530647 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 910 185 180 0 20 chr1 42664880 42664931 -154530501 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 910 696 300 71 35 chr1 42666380 42666663 -154528769 + MTD LTR MaLR 18 310 -109 2 910 443 246 199 81 chr1 42667055 42667316 -154528116 + B4A SINE B4 1 292 0 2 910 372 22 0 0 chr1 42667316 42667361 -154528071 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 910 243 0 0 0 chr1 42667361 42667387 -154528045 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 910 712 74 19 0 chr1 42667735 42667843 -154527589 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 910 3222 60 19 5 chr1 42668256 42668671 -154526761 + L1Md_F2 LINE L1 6162 6582 0 2 910 539 286 154 0 chr1 42668873 42669055 -154526377 - MER2 DNA MER2_type -9 336 127 2 910 589 296 202 16 chr1 42669431 42670242 -154525190 + L1MB3 LINE L1 3961 4931 -1215 2 910 318 322 9 0 chr1 42670279 42670394 -154525038 + (CA)n Simple_repeat Simple_repeat 2 117 0 2 910 1076 262 133 55 chr1 42670413 42670998 -154524434 + L1MB3 LINE L1 5380 6010 -173 2 910 383 0 0 21 chr1 42671094 42671142 -154524290 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 910 427 324 33 33 chr1 42671142 42671292 -154524140 - RSINE1 SINE B4 -14 151 2 2 910 189 0 0 0 chr1 42672090 42672111 -154523321 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 910 254 290 0 0 chr1 42672455 42672524 -154522908 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 910 1126 281 38 0 chr1 42672714 42673027 -154522405 - Lx9 LINE L1 -157 7487 7163 2 910 195 139 0 0 chr1 42673148 42673184 -154522248 + (TATG)n Simple_repeat Simple_repeat 4 39 0 2 910 704 303 28 69 chr1 42673191 42673482 -154521950 - B4A SINE B4 0 292 14 2 910 2413 161 42 10 chr1 42674085 42674493 -154520939 - MTC LTR MaLR 0 421 1 2 910 286 298 126 16 chr1 42675182 42675373 -154520059 + L1MB8 LINE L1 5791 6002 -176 2 910 331 248 111 1 chr1 42675401 42675490 -154519942 + B1_Mur4 SINE Alu 2 96 -31 2 910 227 244 122 0 chr1 42675540 42675622 -154519810 - MLT1J2 LTR MaLR -7 441 350 2 910 315 355 57 16 chr1 42676135 42676327 -154519105 - MER2 DNA MER2_type -39 306 107 2 910 246 289 12 12 chr1 42676919 42677003 -154518429 + L1MB1 LINE L1 4856 4939 -1204 2 910 252 312 101 35 chr1 42677061 42677260 -154518172 + L1MB1 LINE L1 5083 5294 -846 2 910 553 313 58 13 chr1 42677319 42677631 -154517801 + L1MB1 LINE L1 5553 5883 -285 2 910 243 0 0 0 chr1 42677631 42677658 -154517774 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 910 553 313 58 13 chr1 42677658 42677727 -154517705 + L1MB1 LINE L1 5884 5951 -217 2 910 1106 235 64 22 chr1 42678081 42678234 -154517198 + ORR1A2 LTR MaLR 1 154 -173 2 910 1590 86 5 0 chr1 42678234 42678454 -154516978 + L1_Mus2 LINE L1 6346 6566 0 2 910 1106 235 64 22 chr1 42678454 42678613 -154516819 + ORR1A2 LTR MaLR 155 326 -1 2 910 972 297 78 30 chr1 42678631 42679030 -154516402 + L1_Rod LINE L1 5428 5845 -2 2 910 228 67 0 0 chr1 42679265 42679295 -154516137 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 910 22 0 0 0 chr1 42679303 42679325 -154516107 + AT_rich Low_complexity Low_complexity 1 22 0 2 910 1104 167 46 5 chr1 42679527 42679744 -154515688 - URR1A DNA MER1_type 0 226 1 2 910 1055 278 0 0 chr1 42679744 42679997 -154515435 - MTD LTR MaLR -165 254 2 2 910 23 33 0 0 chr1 42681165 42681195 -154514237 + AT_rich Low_complexity Low_complexity 1 30 0 2 910 292 308 94 45 chr1 42681218 42681463 -154513969 - Lx8 LINE L1 -9 7464 7208 2 910 243 0 0 0 chr1 42682207 42682234 -154513198 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 910 387 0 0 0 chr1 42682234 42682276 -154513156 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 910 238 217 0 40 chr1 42683106 42683231 -154512201 + C-rich Low_complexity Low_complexity 1 120 0 2 910 531 0 0 0 chr1 42684464 42684523 -154510909 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 910 471 78 0 0 chr1 42685621 42685685 -154509747 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 910 546 16 0 0 chr1 42686184 42686247 -154509185 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 910 1168 137 99 33 chr1 42687234 42687445 -154507987 + URR1B DNA MER1_type 1 225 0 2 910 22 0 0 0 chr1 42687497 42687519 -154507913 + AT_rich Low_complexity Low_complexity 1 22 0 2 910 598 284 29 39 chr1 42687660 42687865 -154507567 - B3A SINE B2 0 216 14 2 910 245 295 12 49 chr1 42687912 42687994 -154507438 + BC1_Mm scRNA scRNA 5 83 -69 2 910 956 259 65 39 chr1 42688580 42688917 -154506515 - ORR1E LTR MaLR -11 348 3 2 910 3077 163 31 9 chr1 42689056 42689518 -154505914 + RLTR20D LTR ERVK 1 463 -105 2 910 1314 47 0 0 chr1 42689518 42689755 -154505677 + (TG)n Simple_repeat Simple_repeat 1 237 0 2 910 3077 163 31 9 chr1 42689755 42689846 -154505586 + RLTR20D LTR ERVK 464 562 -6 2 910 182 37 37 0 chr1 42690852 42690879 -154504553 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 910 21 0 0 0 chr1 42691556 42691577 -154503855 + AT_rich Low_complexity Low_complexity 1 21 0 2 910 402 21 0 0 chr1 42691714 42691761 -154503671 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 910 249 33 0 0 chr1 42692342 42692372 -154503060 + (CTGTG)n Simple_repeat Simple_repeat 1 30 0 3 910 441 240 9 28 chr1 42692880 42692987 -154502445 + PB1D10 SINE Alu 13 117 0 3 910 317 198 79 50 chr1 42695620 42695721 -154499711 - PB1D10 SINE Alu 0 117 14 3 910 369 0 0 0 chr1 42695879 42695920 -154499512 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 910 351 0 0 0 chr1 42695920 42695958 -154499474 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 910 1175 228 41 186 chr1 42696209 42696586 -154498846 - MTD LTR MaLR 0 419 114 3 910 1137 128 0 0 chr1 42696586 42696766 -154498666 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 910 1326 78 0 0 chr1 42696766 42696946 -154498486 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 910 1175 228 41 186 chr1 42696946 42697057 -154498375 - MTD LTR MaLR -306 113 2 3 910 950 245 201 30 chr1 42697635 42698129 -154497303 + RCHARR1 DNA MER1_type 325 908 -66 3 910 279 0 0 0 chr1 42698129 42698160 -154497272 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 3 910 950 263 105 40 chr1 42698160 42698222 -154497210 + RCHARR1 DNA MER1_type 909 969 -5 3 910 220 276 92 0 chr1 42698265 42698341 -154497091 + MIRb SINE MIR 125 207 -61 3 910 1905 111 0 14 chr1 42698362 42698654 -154496778 + L1_Mus4 LINE L1 6349 6636 0 3 910 26 0 0 0 chr1 42699270 42699296 -154496136 + AT_rich Low_complexity Low_complexity 1 26 0 3 910 309 218 45 22 chr1 42699647 42699736 -154495696 + RMER17C LTR ERVK 57 147 -263 3 910 354 45 0 0 chr1 42700077 42700121 -154495311 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 910 1195 144 0 0 chr1 42700200 42700387 -154495045 - ORR1A3 LTR MaLR -138 188 2 3 910 1076 189 144 0 chr1 42700388 42700631 -154494801 + ORR1D1 LTR MaLR 95 372 -2 3 910 233 300 0 17 chr1 42702116 42702183 -154493249 - ID2 SINE ID -71 81 16 3 910 3530 20 2 0 chr1 42702947 42703342 -154492090 - MTA_Mm LTR MaLR 0 396 1 3 910 9254 33 4 2 chr1 42703342 42704438 -154490994 - MTA_Mm-int LTR MaLR 0 1098 1 3 910 3530 20 2 0 chr1 42704438 42704833 -154490599 - MTA_Mm LTR MaLR 0 396 1 3 910 379 331 60 6 chr1 42704951 42705118 -154490314 - MER58A DNA MER1_type -48 176 1 3 910 1080 223 136 58 chr1 42706906 42706937 -154488495 - MTD LTR MaLR -12 407 388 3 910 638 232 134 21 chr1 42706937 42707131 -154488301 + B3 SINE B2 1 216 0 3 910 1080 223 136 58 chr1 42707131 42707475 -154487957 - MTD LTR MaLR -32 387 3 3 910 553 288 112 62 chr1 42707497 42707584 -154487848 + MLT1A0 LTR MaLR 60 150 -215 3 910 207 0 0 0 chr1 42707584 42707607 -154487825 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 910 553 288 112 62 chr1 42707607 42707776 -154487656 + MLT1A0 LTR MaLR 151 329 -36 3 910 273 300 12 0 chr1 42707776 42707856 -154487576 + ID2 SINE ID 3 83 0 3 910 261 0 0 0 chr1 42708172 42708201 -154487231 + (A)n Simple_repeat Simple_repeat 1 29 0 3 910 255 297 83 24 chr1 42708654 42708823 -154486609 + L1M5 LINE L1 3670 3848 -2298 3 910 518 337 49 8 chr1 42709588 42709854 -154485578 + B4A SINE B4 2 278 -14 3 910 405 0 0 0 chr1 42709866 42709911 -154485521 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 910 304 246 14 132 chr1 42710367 42710535 -154484897 + L1ME3A LINE L1 5844 5991 -453 3 910 216 135 0 0 chr1 42710843 42710880 -154484552 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 910 1087 289 147 56 chr1 42710917 42711467 -154483965 + Lx8 LINE L1 6865 7464 -9 3 910 198 0 0 0 chr1 42712513 42712535 -154482897 + (A)n Simple_repeat Simple_repeat 1 22 0 3 910 181 0 69 0 chr1 42713259 42713288 -154482144 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 910 1191 49 0 0 chr1 42713288 42713430 -154482002 - B1_Mus1 SINE Alu -5 143 2 3 910 242 267 92 13 chr1 42715269 42715345 -154480087 + PB1D10 SINE Alu 24 105 -12 3 910 4199 46 27 2 chr1 42715349 42715867 -154479565 - L1Md_F2 LINE L1 -12 6570 6040 3 910 472 42 14 14 chr1 42716061 42716133 -154479299 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 910 279 173 0 0 chr1 42717031 42717083 -154478349 + CT-rich Low_complexity Low_complexity 2 53 0 3 910 25 0 0 0 chr1 42717488 42717513 -154477919 + AT_rich Low_complexity Low_complexity 1 25 0 3 910 312 241 92 0 chr1 42718294 42718381 -154477051 - MamSINE1 SINE tRNA -192 98 4 3 910 272 263 52 13 chr1 42719732 42719809 -154475623 + ID4 SINE ID 2 81 -2 3 910 1373 98 0 15 chr1 42721098 42721295 -154474137 + B2_Mm2 SINE B2 2 195 0 3 910 249 324 19 38 chr1 42721446 42721552 -154473880 + ID_B1 SINE B4 70 173 -51 3 910 216 163 0 0 chr1 42721687 42721730 -154473702 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 3 910 440 340 0 0 chr1 42721745 42721904 -154473528 + (TGG)n Simple_repeat Simple_repeat 2 160 0 3 910 2146 62 36 4 chr1 42721904 42722178 -154473254 + L1_Mus1 LINE L1 6284 6566 -1 3 910 1860 111 19 4 chr1 42722186 42722457 -154472975 - ORR1A1 LTR MaLR -71 275 1 3 910 306 0 0 0 chr1 42722620 42722654 -154472778 + (TGG)n Simple_repeat Simple_repeat 2 35 0 3 910 233 204 0 0 chr1 42722930 42722979 -154472453 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 910 205 198 22 0 chr1 42722990 42723081 -154472351 + (TCTCTG)n Simple_repeat Simple_repeat 6 98 0 3 910 664 224 137 0 chr1 42723134 42723295 -154472137 - B3A SINE B2 -15 183 1 3 910 456 349 106 25 chr1 42723675 42723995 -154471437 + MLT1I LTR MaLR 20 365 -46 3 910 237 108 0 0 chr1 42724229 42724266 -154471166 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 910 593 61 0 12 chr1 42725505 42725588 -154469844 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 3 910 409 174 10 10 chr1 42725589 42725688 -154469744 + GA-rich Low_complexity Low_complexity 3 101 0 3 910 1278 249 33 25 chr1 42726422 42726788 -154468644 - ORR1D2 LTR MaLR 0 370 2 3 910 1215 97 0 0 chr1 42727648 42727824 -154467608 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 3 910 207 69 0 0 chr1 42727825 42727854 -154467578 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 3 910 252 0 0 0 chr1 42728131 42728159 -154467273 + (A)n Simple_repeat Simple_repeat 1 28 0 3 910 608 249 82 44 chr1 42728915 42729121 -154466311 + B3 SINE B2 3 216 0 3 910 500 209 0 28 chr1 42729142 42729250 -154466182 + B1F2 SINE Alu 2 106 -43 3 910 242 29 0 28 chr1 42729340 42729376 -154466056 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 911 198 0 0 0 chr1 42729651 42729673 -154465759 + (CTAG)n Simple_repeat Simple_repeat 3 24 0 3 911 207 100 0 0 chr1 42729673 42729703 -154465729 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 3 911 193 128 43 0 chr1 42729703 42729750 -154465682 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 3 911 195 114 0 0 chr1 42729765 42729800 -154465632 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 911 279 0 0 0 chr1 42730714 42730745 -154464687 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 911 495 0 0 0 chr1 42730745 42730799 -154464633 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 911 414 0 0 0 chr1 42731280 42731326 -154464106 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 911 280 241 19 179 chr1 42731327 42731433 -154463999 - Charlie4z DNA MER1_type -78 89 1 3 911 216 211 95 76 chr1 42732054 42732218 -154463214 - MIRc SINE MIR -43 165 2 3 911 212 134 43 29 chr1 42732490 42732559 -154462873 + (TTATA)n Simple_repeat Simple_repeat 4 73 0 3 911 279 173 0 0 chr1 42732569 42732621 -154462811 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 911 506 99 25 0 chr1 42735472 42735553 -154459879 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 3 911 184 185 121 15 chr1 42738083 42738149 -154457283 - L3 LINE CR1 -875 3614 3542 3 911 270 0 0 0 chr1 42738280 42738310 -154457122 + (A)n Simple_repeat Simple_repeat 1 30 0 3 911 218 213 0 0 chr1 42738340 42738387 -154457045 + T-rich Low_complexity Low_complexity 1 47 0 3 911 181 30 59 29 chr1 42740881 42740915 -154454517 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 911 267 146 0 0 chr1 42741286 42741341 -154454091 + (CCCTG)n Simple_repeat Simple_repeat 5 59 0 3 911 180 111 0 0 chr1 42741958 42741985 -154453447 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 911 227 281 0 92 chr1 42742276 42742374 -154453058 + LTR84a LTR ERVL 402 490 -267 3 911 215 160 0 20 chr1 42743396 42743447 -154451985 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 3 911 198 0 0 0 chr1 42743882 42743904 -154451528 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 911 450 0 0 0 chr1 42744929 42744979 -154450453 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 911 279 0 0 0 chr1 42745210 42745241 -154450191 + (CAA)n Simple_repeat Simple_repeat 3 33 0 3 911 375 78 0 0 chr1 42745498 42745549 -154449883 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 911 459 0 0 0 chr1 42746589 42746640 -154448792 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 911 684 0 0 0 chr1 42747890 42747966 -154447466 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 911 477 0 0 0 chr1 42749475 42749528 -154445904 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 911 214 204 31 41 chr1 42749683 42749780 -154445652 + A-rich Low_complexity Low_complexity 2 97 0 3 911 204 0 0 77 chr1 42749831 42749870 -154445562 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 3 911 420 97 0 0 chr1 42751411 42751473 -154443959 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 911 213 132 0 0 chr1 42751705 42751743 -154443689 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 3 911 382 286 0 0 chr1 42752299 42752404 -154443028 + G-rich Low_complexity Low_complexity 1 105 0 3 911 387 132 0 0 chr1 42752683 42752751 -154442681 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 911 482 162 5 38 chr1 42753781 42753967 -154441465 + (CGG)n Simple_repeat Simple_repeat 1 180 0 3 911 354 33 50 0 chr1 42754077 42754137 -154441295 + (CGG)n Simple_repeat Simple_repeat 2 64 0 3 911 237 132 0 0 chr1 42754295 42754333 -154441099 + (CCG)n Simple_repeat Simple_repeat 1 38 0 3 911 189 74 0 0 chr1 42754391 42754418 -154441014 + (CCG)n Simple_repeat Simple_repeat 2 28 0 3 911 21 0 0 0 chr1 42754502 42754523 -154440909 + GC_rich Low_complexity Low_complexity 1 21 0 3 911 315 85 0 0 chr1 42754551 42754598 -154440834 + (CCG)n Simple_repeat Simple_repeat 3 49 0 4 911 24 32 0 0 chr1 42754690 42754721 -154440711 + GC_rich Low_complexity Low_complexity 1 31 0 4 911 21 0 0 0 chr1 42754868 42754889 -154440543 + GC_rich Low_complexity Low_complexity 1 21 0 4 911 610 164 0 40 chr1 42755508 42755660 -154439772 + (CCG)n Simple_repeat Simple_repeat 3 148 0 4 911 30 27 0 0 chr1 42756539 42756576 -154438856 + AT_rich Low_complexity Low_complexity 1 37 0 4 911 525 96 10 21 chr1 42757467 42757563 -154437869 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 4 911 21 0 0 0 chr1 42757992 42758013 -154437419 + AT_rich Low_complexity Low_complexity 1 21 0 4 911 320 0 25 0 chr1 42758449 42758489 -154436943 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 911 246 0 21 83 chr1 42758638 42758686 -154436746 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 911 570 15 0 0 chr1 42759441 42759508 -154435924 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 911 38 39 0 0 chr1 42759667 42759719 -154435713 + AT_rich Low_complexity Low_complexity 1 52 0 4 911 455 0 18 0 chr1 42760980 42761035 -154434397 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 911 629 101 10 0 chr1 42763035 42763134 -154432298 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 4 911 183 100 0 0 chr1 42763910 42763940 -154431492 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 911 252 0 0 0 chr1 42765948 42765976 -154429456 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 911 360 0 0 0 chr1 42768186 42768226 -154427206 + (A)n Simple_repeat Simple_repeat 1 40 0 4 911 528 16 0 0 chr1 42769785 42769846 -154425586 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 911 189 0 0 0 chr1 42770744 42770765 -154424667 + (GGGAA)n Simple_repeat Simple_repeat 5 25 0 4 911 213 65 0 0 chr1 42771443 42771474 -154423958 + (C)n Simple_repeat Simple_repeat 1 31 0 4 911 595 277 44 118 chr1 42772246 42772561 -154422871 - RMER15 LTR ERVL -27 548 257 4 911 1190 304 123 41 chr1 42773287 42773776 -154421656 - L1MB2 LINE L1 -65 6106 5556 4 911 1255 100 38 16 chr1 42773776 42773959 -154421473 - B2_Mm2 SINE B2 -8 187 1 4 911 1190 304 123 41 chr1 42773959 42774079 -154421353 - L1MB2 LINE L1 -616 5555 5447 4 911 182 178 44 0 chr1 42774143 42774188 -154421244 + T-rich Low_complexity Low_complexity 2 48 0 4 911 372 245 89 54 chr1 42774291 42774403 -154421029 + PB1D9 SINE Alu 2 117 0 4 911 514 233 50 8 chr1 42774546 42774667 -154420765 - B1F SINE Alu -11 138 13 4 911 609 171 0 9 chr1 42777347 42777453 -154417979 - B1_Mm SINE Alu -1 146 42 4 911 249 200 69 59 chr1 42777396 42777497 -154417935 - RLTR25B LTR ERVK -530 498 397 4 911 293 193 34 34 chr1 42777571 42777630 -154417802 - PB1D9 SINE Alu -61 59 1 4 911 468 0 0 0 chr1 42778813 42778865 -154416567 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 911 386 245 128 32 chr1 42781160 42781316 -154414116 + MER2 DNA MER2_type 173 343 -2 4 911 1112 29 0 0 chr1 42782085 42782225 -154413207 + B1_Mus1 SINE Alu 9 148 0 4 911 669 213 0 0 chr1 42782268 42782390 -154413042 + B1_Mur4 SINE Alu 13 134 -16 4 911 897 181 0 0 chr1 42782403 42782580 -154412852 + GA-rich Low_complexity Low_complexity 2 178 0 4 911 245 196 0 0 chr1 42783776 42783827 -154411605 - BGLII_A LTR ERVK 0 445 395 4 911 862 250 11 66 chr1 42783828 42784115 -154411317 - BGLII_B LTR ERVK 0 441 171 4 911 913 171 90 11 chr1 42785096 42785285 -154410147 + B3 SINE B2 3 206 -10 4 911 204 125 0 0 chr1 42786356 42786388 -154409044 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 911 254 284 37 0 chr1 42787747 42787828 -154407604 - ORR1E LTR MaLR 0 379 296 4 911 1026 246 40 4 chr1 42787960 42788209 -154407223 + MTD LTR MaLR 1 258 -161 4 911 279 313 45 22 chr1 42788274 42788408 -154407024 - ORR1E LTR MaLR -222 137 1 4 911 230 348 0 0 chr1 42788554 42788643 -154406789 + Lx7 LINE L1 5703 5791 -1905 4 911 763 164 35 7 chr1 42788659 42788800 -154406632 + B1_Mm SINE Alu 3 147 0 4 911 246 136 0 0 chr1 42788818 42788862 -154406570 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 911 567 144 0 0 chr1 42788930 42789041 -154406391 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 911 1488 50 22 0 chr1 42789056 42789238 -154406194 + B2_Mm2 SINE B2 2 187 -8 4 911 2255 104 0 12 chr1 42789896 42790226 -154405206 + ORR1A3 LTR MaLR 1 326 0 4 911 276 30 0 0 chr1 42790440 42790473 -154404959 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 911 443 18 18 0 chr1 42790473 42790528 -154404904 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 911 3728 140 43 18 chr1 42790785 42791138 -154404294 - RMER6D LTR ERVK -33 687 342 4 911 519 56 0 0 chr1 42791138 42791209 -154404223 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 911 3728 140 43 18 chr1 42791209 42791525 -154403907 - RMER6D LTR ERVK -379 341 1 4 911 650 209 26 19 chr1 42792204 42792360 -154403072 + MTE2b LTR MaLR 189 345 -34 4 911 418 286 64 69 chr1 42792439 42792693 -154402739 + B4A SINE B4 2 265 -27 4 911 515 315 74 32 chr1 42793621 42793959 -154401473 + MLT1A0 LTR MaLR 10 361 -4 4 911 536 279 44 16 chr1 42793970 42794152 -154401280 + ORR1E LTR MaLR 9 195 -164 4 911 642 37 0 0 chr1 42794177 42794258 -154401174 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 911 359 221 104 0 chr1 42794486 42794563 -154400869 - PB1D7 SINE Alu -7 113 29 4 911 814 149 122 24 chr1 42794793 42794966 -154400466 + B3 SINE B2 1 189 -27 4 911 279 0 0 0 chr1 42794966 42794997 -154400435 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 911 505 208 57 108 chr1 42794997 42795017 -154400415 + B2_Mm2 SINE B2 170 184 -11 4 911 716 230 6 44 chr1 42795045 42795227 -154400205 + B3A SINE B2 17 191 -7 4 911 408 20 0 0 chr1 42795233 42795282 -154400150 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 911 644 173 62 16 chr1 42795290 42795419 -154400013 - B1_Mus2 SINE Alu -8 139 5 4 911 788 224 140 16 chr1 42795470 42795656 -154399776 - B3 SINE B2 -5 211 3 4 911 22 0 0 0 chr1 42795670 42795692 -154399740 + AT_rich Low_complexity Low_complexity 1 22 0 4 911 1621 154 21 0 chr1 42801642 42801928 -154393504 + MTB_Mm LTR MaLR 1 292 -115 4 911 419 279 88 6 chr1 42801932 42802091 -154393341 + Tigger7 DNA MER2_type 2319 2490 -1 4 911 567 103 0 33 chr1 42802113 42802203 -154393229 - MTC LTR MaLR -1 420 334 4 911 293 262 0 0 chr1 42802831 42802911 -154392521 + MER44D DNA MER2_type 58 137 -568 4 911 561 178 0 116 chr1 42802928 42803074 -154392358 + MT2A LTR ERVL 1 129 -404 4 911 1107 205 22 55 chr1 42803075 42803372 -154392060 + MT2A LTR ERVL 100 529 -72 4 911 444 136 62 26 chr1 42803379 42803492 -154391940 - Lx3_Mus LINE L1 0 7009 6893 4 911 6050 68 14 1 chr1 42803494 42804291 -154391141 + Lx3_Mus LINE L1 5934 6740 -269 4 911 560 229 0 85 chr1 42804604 42804757 -154390675 + B1_Mur4 SINE Alu 1 140 -10 4 911 278 180 16 0 chr1 42804776 42804837 -154390595 + GA-rich Low_complexity Low_complexity 3 64 0 4 911 286 215 54 45 chr1 42804942 42805054 -154390378 - MTEb LTR MaLR -8 371 259 4 911 253 293 98 0 chr1 42805130 42805212 -154390220 - MTEb LTR MaLR -261 98 9 4 911 864 305 75 12 chr1 42805339 42805567 -154389865 - MLT1C LTR MaLR -24 443 209 4 911 243 0 0 0 chr1 42805567 42805594 -154389838 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 911 864 305 75 12 chr1 42805594 42805776 -154389656 - MLT1C LTR MaLR -259 208 8 4 911 611 216 125 6 chr1 42806112 42806129 -154389303 - B3A SINE B2 -7 191 174 4 911 369 0 0 0 chr1 42806129 42806170 -154389262 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 911 611 216 125 6 chr1 42806170 42806320 -154389112 - B3A SINE B2 -25 173 4 4 911 801 73 0 0 chr1 42807286 42807395 -154388037 + (GA)n Simple_repeat Simple_repeat 1 109 0 4 911 448 171 0 0 chr1 42807430 42807506 -154387926 - B1_Mus2 SINE Alu -25 122 47 4 911 966 233 0 67 chr1 42807585 42807810 -154387622 + B3 SINE B2 6 215 -1 4 911 541 188 0 0 chr1 42807868 42807969 -154387463 + MTD LTR MaLR 10 110 -309 4 911 1033 149 15 25 chr1 42807954 42808153 -154387279 + MTD LTR MaLR 223 419 0 4 911 214 328 16 0 chr1 42808681 42808745 -154386687 - B1F2 SINE Alu -70 79 15 4 911 27 0 0 0 chr1 42808883 42808910 -154386522 + AT_rich Low_complexity Low_complexity 1 27 0 4 911 2261 99 12 58 chr1 42810693 42811035 -154384397 + ORR1A3 LTR MaLR 1 326 0 4 911 495 257 119 46 chr1 42811035 42811186 -154384246 + ORR1D2 LTR MaLR 3 164 -206 4 911 496 266 117 32 chr1 42811273 42811522 -154383910 + Lx8 LINE L1 7204 7473 0 4 911 425 168 68 19 chr1 42813274 42813377 -154382055 - Tigger5 DNA MER2_type -49 2357 2250 4 911 1043 190 190 0 chr1 42813442 42813674 -154381758 - Lx5 LINE L1 -2 7048 6773 4 911 239 369 68 39 chr1 42814104 42814338 -154381094 - LTR82B Low_complexity ERVL -21 809 569 4 911 261 187 40 0 chr1 42814484 42814559 -154380873 - LTR82B Low_complexity ERVL -506 324 247 4 911 796 219 0 0 chr1 42814863 42815009 -154380423 - B1_Mus2 SINE Alu 0 147 2 4 911 278 364 105 46 chr1 42815222 42815527 -154379905 - MLT1J-int LTR MaLR -551 836 514 4 911 224 301 24 12 chr1 42815561 42815645 -154379787 + CT-rich Low_complexity Low_complexity 1 85 0 4 911 234 374 54 34 chr1 42815860 42815938 -154379494 - MLT1J-int LTR MaLR -1045 342 269 4 911 315 0 0 0 chr1 42815938 42815973 -154379459 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 911 234 374 54 34 chr1 42815973 42816099 -154379333 - MLT1J-int LTR MaLR -1119 268 135 4 911 1588 97 258 8 chr1 42816229 42816489 -154378943 - ORR1A3 LTR MaLR -1 325 1 4 911 453 241 11 0 chr1 42816914 42817001 -154378431 + B3A SINE B2 46 133 -65 4 911 375 23 0 0 chr1 42817006 42817050 -154378382 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 911 315 0 0 0 chr1 42817050 42817084 -154378348 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 911 261 0 0 0 chr1 42817084 42817112 -154378320 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 911 528 184 62 45 chr1 42817115 42817291 -154378141 + L1M4c LINE L1 686 864 -5520 4 911 383 283 14 14 chr1 42817272 42817470 -154377962 + Lx8 LINE L1 5714 5930 -370 4 911 1251 92 5 36 chr1 42817632 42817824 -154377608 + B2_Mm2 SINE B2 1 186 -9 5 911 430 336 81 56 chr1 42817828 42818112 -154377320 + L1M4c LINE L1 925 1215 -5169 4 911 622 324 116 17 chr1 42818517 42818818 -154376614 - MLT1A0 LTR MaLR -1 364 34 5 911 667 193 35 14 chr1 42818954 42819096 -154376336 - B1_Mus2 SINE Alu 0 147 3 5 911 363 195 12 35 chr1 42819133 42819218 -154376214 - Lx7 LINE L1 -4 7692 7610 5 911 25 31 0 0 chr1 42819562 42819594 -154375838 + AT_rich Low_complexity Low_complexity 1 32 0 5 911 23 33 0 0 chr1 42819822 42819852 -154375580 + AT_rich Low_complexity Low_complexity 1 30 0 5 911 466 331 25 0 chr1 42819891 42820048 -154375384 - RSINE1 SINE B4 -2 163 3 5 911 527 29 14 0 chr1 42820283 42820352 -154375080 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 911 278 0 54 0 chr1 42820676 42820713 -154374719 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 911 324 0 0 0 chr1 42821108 42821144 -154374288 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 911 369 161 57 48 chr1 42821927 42822051 -154373381 - Lx6 LINE L1 -8 7452 7328 5 911 389 216 0 45 chr1 42822079 42822258 -154373174 + C-rich Low_complexity Low_complexity 1 171 0 5 911 288 0 0 0 chr1 42822455 42822487 -154372945 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 911 288 53 0 0 chr1 42822634 42822672 -154372760 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 911 23 0 0 0 chr1 42822698 42822721 -154372711 + AT_rich Low_complexity Low_complexity 1 23 0 5 911 674 260 64 35 chr1 42823222 42823425 -154372007 - ID_B1 SINE B4 -2 222 14 5 911 5043 67 3 16 chr1 42823566 42824233 -154371199 + L1_Mus3 LINE L1 5981 6638 0 5 911 5843 47 6 3 chr1 42824831 42825538 -154369894 + L1Md_F2 LINE L1 5874 6582 0 5 911 1164 41 0 20 chr1 42826673 42826822 -154368610 - B1_Mm SINE Alu -1 146 1 5 911 186 43 0 0 chr1 42826928 42826951 -154368481 + (TTA)n Simple_repeat Simple_repeat 1 23 0 5 911 300 27 0 0 chr1 42827242 42827279 -154368153 + (TTG)n Simple_repeat Simple_repeat 2 38 0 5 911 261 0 0 0 chr1 42827814 42827843 -154367589 + (A)n Simple_repeat Simple_repeat 1 29 0 5 911 206 238 0 0 chr1 42828029 42828071 -154367361 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 911 192 77 0 0 chr1 42830969 42830995 -154364437 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 5 911 360 219 0 0 chr1 42831561 42831643 -154363789 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 5 911 480 18 0 0 chr1 42831643 42831700 -154363732 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 911 653 174 0 4 chr1 42832583 42832816 -154362616 + (CA)n Simple_repeat Simple_repeat 1 231 0 5 911 975 251 10 5 chr1 42833218 42833426 -154362006 - B3 SINE B2 -6 210 2 5 911 282 164 0 0 chr1 42833913 42833968 -154361464 + CT-rich Low_complexity Low_complexity 3 57 0 5 911 332 323 61 35 chr1 42835455 42835686 -154359746 - MLT1B LTR MaLR -84 306 70 5 911 255 61 0 0 chr1 42836947 42836980 -154358452 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 5 911 265 292 29 59 chr1 42839559 42839661 -154355771 + MLT1A1 LTR MaLR 300 398 -10 5 911 388 161 135 22 chr1 42840834 42840923 -154354509 + PB1D10 SINE Alu 19 117 0 5 911 1179 76 0 0 chr1 42841226 42841371 -154354061 + B1_Mus1 SINE Alu 2 146 -2 5 911 197 65 0 31 chr1 42841371 42841403 -154354029 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 911 2149 128 0 58 chr1 42841518 42841865 -154353567 - ORR1A2 LTR MaLR 0 327 1 5 911 436 285 154 5 chr1 42841955 42842105 -154353327 + B4 SINE B4 46 223 -69 5 911 257 0 30 0 chr1 42842105 42842138 -154353294 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 911 436 285 154 5 chr1 42842138 42842195 -154353237 + B4 SINE B4 224 283 -9 5 911 450 226 51 127 chr1 42842350 42842377 -154353055 - B3A SINE B2 -16 182 160 5 911 393 22 0 0 chr1 42842377 42842423 -154353009 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 911 393 22 0 0 chr1 42842423 42842468 -154352964 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 911 450 226 51 127 chr1 42842468 42842596 -154352836 - B3A SINE B2 -39 159 39 5 911 187 106 0 60 chr1 42842600 42842650 -154352782 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 911 1008 229 160 69 chr1 42842650 42842787 -154352645 - MTD LTR MaLR -24 395 210 5 911 306 0 0 0 chr1 42842787 42842821 -154352611 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 911 468 0 0 0 chr1 42842821 42842872 -154352560 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 911 1008 229 160 69 chr1 42842872 42843095 -154352337 - MTD LTR MaLR -210 209 2 5 911 260 291 25 12 chr1 42843642 42843722 -154351710 + B4A SINE B4 4 84 -208 5 911 428 250 162 27 chr1 42843723 42843871 -154351561 + RMER1B Other Other 247 414 -652 5 911 3238 171 92 30 chr1 42843943 42844634 -154350798 + RMER1B Other Other 14 1064 -2 5 911 215 263 19 6 chr1 42844698 42844855 -154350577 + (CA)n Simple_repeat Simple_repeat 1 159 0 5 911 416 256 6 0 chr1 42844873 42845045 -154350387 + (CA)n Simple_repeat Simple_repeat 2 174 0 5 911 359 318 144 0 chr1 42845723 42845797 -154349635 + RMER30 DNA MER1_type 5 84 -118 5 911 258 32 0 0 chr1 42845797 42845828 -154349604 + (ATGGTG)n Simple_repeat Simple_repeat 3 33 0 5 911 359 318 144 0 chr1 42845828 42845926 -154349506 + RMER30 DNA MER1_type 85 201 -1 5 911 1492 47 0 77 chr1 42846099 42846307 -154349125 + B2_Mm1a SINE B2 2 193 0 5 911 2012 306 163 31 chr1 42846322 42847396 -154348036 + Lx8 LINE L1 6234 7449 -24 5 911 1794 129 15 59 chr1 42847699 42848036 -154347396 - RLTRETN_Mm LTR ERVK 0 322 1 5 911 832 277 160 23 chr1 42848529 42848713 -154346719 - L1MB1 LINE L1 -72 6353 6133 5 911 459 0 0 0 chr1 42848713 42848764 -154346668 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 911 832 277 160 23 chr1 42848764 42848967 -154346465 - L1MB1 LINE L1 -293 6132 5915 5 911 198 103 0 0 chr1 42849009 42849038 -154346394 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 5 911 1688 155 42 56 chr1 42849041 42849396 -154346036 + ORR1D1 LTR MaLR 25 374 0 5 911 441 36 0 0 chr1 42849493 42849548 -154345884 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 911 315 71 0 0 chr1 42849548 42849589 -154345843 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 911 319 376 22 8 chr1 42849638 42849772 -154345660 - B1_Mur4 SINE Alu -9 141 6 5 911 1437 297 70 9 chr1 42849778 42850559 -154344873 - L1MB1 LINE L1 -676 5728 4886 5 911 1179 271 103 25 chr1 42850589 42851179 -154344253 - L1MB1 LINE L1 -3255 3121 2486 5 911 742 225 59 20 chr1 42851180 42851384 -154344048 - B3A SINE B2 -1 215 4 5 911 21 0 0 0 chr1 42851418 42851439 -154343993 + AT_rich Low_complexity Low_complexity 1 21 0 5 911 356 259 89 14 chr1 42851439 42851611 -154343821 - L1MB1 LINE L1 -3926 2458 2282 5 911 315 0 0 0 chr1 42851611 42851646 -154343786 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 911 316 309 135 21 chr1 42851646 42851813 -154343619 - L1MB1 LINE L1 -4103 2281 2081 5 911 826 180 208 0 chr1 42852021 42852199 -154343233 - B3 SINE B2 0 216 2 5 911 875 308 75 52 chr1 42852199 42852909 -154342523 - L1MB1 LINE L1 -4584 1800 1073 5 911 337 242 152 11 chr1 42853238 42853330 -154342102 - PB1D10 SINE Alu -1 116 12 5 911 587 185 83 0 chr1 42853566 42853674 -154341758 - B1_Mur1 SINE Alu -13 136 20 5 911 467 183 0 0 chr1 42853694 42853776 -154341656 - ID_B1 SINE B4 -2 222 141 5 911 349 233 14 14 chr1 42853963 42854037 -154341395 + RSINE1 SINE B4 31 104 -61 5 911 288 0 0 0 chr1 42854046 42854078 -154341354 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 911 1187 25 25 0 chr1 42854090 42854249 -154341183 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 5 911 786 59 244 0 chr1 42854417 42854536 -154340896 - B1_Mus1 SINE Alu 0 148 1 5 911 355 325 35 0 chr1 42854676 42854790 -154340642 - B1F SINE Alu -25 124 7 5 911 908 288 14 45 chr1 42855078 42855365 -154340067 + B4A SINE B4 9 286 -6 5 911 353 125 0 30 chr1 42855459 42855525 -154339907 + (TATG)n Simple_repeat Simple_repeat 4 67 0 5 911 531 297 60 7 chr1 42855528 42855677 -154339755 - RSINE1 SINE B4 0 165 9 5 911 261 266 35 26 chr1 42855711 42855827 -154339605 - Lx7 LINE L1 -5 7691 7575 5 911 229 219 14 14 chr1 42855827 42855901 -154339531 + CT-rich Low_complexity Low_complexity 2 75 0 5 911 2784 292 65 39 chr1 42855945 42856139 -154339293 - Lx7 LINE L1 -335 7361 7185 5 911 739 193 227 0 chr1 42856139 42856315 -154339117 - B3 SINE B2 0 216 1 5 911 2784 292 65 39 chr1 42856315 42857105 -154338327 - Lx7 LINE L1 -512 7184 6351 5 911 328 203 46 15 chr1 42857191 42857321 -154338111 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 5 911 1165 288 65 12 chr1 42857321 42857733 -154337699 - Lx7 LINE L1 -1332 6364 5931 5 911 184 304 18 0 chr1 42857785 42857841 -154337591 + MIRc SINE MIR 138 194 -74 5 911 450 280 0 8 chr1 42858201 42858320 -154337112 + PB1D9 SINE Alu 3 120 0 5 911 228 248 100 113 chr1 42859064 42859156 -154336276 - ORR1B1 LTR MaLR -244 150 59 5 911 2256 132 6 3 chr1 42859156 42859482 -154335950 - ORR1A2 LTR MaLR 0 327 1 5 911 228 248 100 113 chr1 42859482 42859539 -154335893 - ORR1B1 LTR MaLR -336 58 3 5 113 1613 208 257 32 chr1 42860405 42860868 -154334564 - RMER2 LTR ERV1 0 567 1 5 912 227 298 0 17 chr1 42861270 42861328 -154334104 + polypyrimidine Low_complexity Low_complexity 48 104 0 5 912 1711 174 34 109 chr1 42862220 42862634 -154332798 - ORR1C2 LTR MaLR -1 383 1 5 912 744 261 110 11 chr1 42862807 42863071 -154332361 - B4 SINE B4 0 292 3 5 912 736 249 0 77 chr1 42863092 42863301 -154332131 - B3A SINE B2 0 198 6 5 912 180 0 0 0 chr1 42863315 42863335 -154332097 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 912 261 0 0 0 chr1 42863464 42863493 -154331939 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 5 912 1334 132 171 23 chr1 42864130 42864440 -154330992 - RMER6C LTR ERVK 0 690 335 5 912 323 159 29 0 chr1 42864440 42864509 -154330923 + C-rich Low_complexity Low_complexity 1 71 0 5 912 408 223 48 10 chr1 42864522 42864626 -154330806 + RMER5 LTR ERV1 1 108 -426 5 912 816 282 28 8 chr1 42864638 42864892 -154330540 + RMER5 LTR ERV1 198 456 -78 5 912 793 251 85 36 chr1 42864900 42865148 -154330284 + MTEa LTR MaLR 120 379 0 5 912 410 290 62 0 chr1 42865148 42865293 -154330139 + MTEa-int LTR MaLR 1 154 -1426 5 912 1150 255 88 3 chr1 42865314 42865668 -154329764 + MTEa-int LTR MaLR 236 619 -961 5 912 471 255 117 12 chr1 42865666 42865829 -154329603 + MTEa-int LTR MaLR 1394 1573 -7 5 912 403 162 0 14 chr1 42865844 42865913 -154329519 + MTEa LTR MaLR 20 87 -292 5 912 1687 154 124 0 chr1 42865916 42866246 -154329186 - RMER1A Other Other -2 1028 658 5 912 893 204 201 32 chr1 42866678 42867026 -154328406 - MTD LTR MaLR 0 419 13 5 912 789 243 34 92 chr1 42867351 42867645 -154327787 + RMER5 LTR ERV1 31 307 -227 5 912 582 146 0 0 chr1 42867816 42867926 -154327506 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 912 180 289 0 0 chr1 42867963 42868053 -154327379 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 912 274 253 219 35 chr1 42868346 42868547 -154326885 - LTR50 LTR ERVL -557 238 1 5 912 503 139 10 0 chr1 42869171 42869272 -154326160 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 912 244 279 0 29 chr1 42869272 42869342 -154326090 + MLT2B3 LTR ERVL 70 137 -417 6 912 246 239 0 0 chr1 42869837 42869908 -154325524 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 912 331 233 0 0 chr1 42869922 42869995 -154325437 + MLT2B3 LTR ERVL 83 155 -399 6 912 1044 317 60 18 chr1 42870065 42870502 -154324930 - MLT2B1 LTR ERVL -59 461 7 6 912 181 291 62 25 chr1 42870600 42870681 -154324751 + L2b LINE L2 2841 2924 -495 6 912 182 294 20 0 chr1 42870802 42870853 -154324579 + L2b LINE L2 3095 3146 -229 6 912 1008 294 42 17 chr1 42872102 42872455 -154322977 - MLT1A0 LTR MaLR 0 365 4 6 912 447 63 0 0 chr1 42872763 42872826 -154322606 + (TTTTG)n Simple_repeat Simple_repeat 1 63 0 6 912 278 91 0 203 chr1 42872837 42872906 -154322526 - B1_Mus2 SINE Alu -34 113 59 6 912 236 53 26 0 chr1 42873104 42873142 -154322290 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 912 345 312 69 19 chr1 42874135 42874295 -154321137 + HAL1-2a_MD LINE L1 2341 2508 -516 6 912 22 0 0 0 chr1 42875048 42875070 -154320362 + AT_rich Low_complexity Low_complexity 1 22 0 6 912 245 299 181 28 chr1 42875468 42875650 -154319782 - L2a LINE L2 -1 3425 3216 6 912 1038 39 0 0 chr1 42875664 42875791 -154319641 + (TG)n Simple_repeat Simple_repeat 2 128 0 6 912 21 36 0 0 chr1 42875874 42875902 -154319530 + AT_rich Low_complexity Low_complexity 1 28 0 6 912 270 312 0 61 chr1 42876180 42876262 -154319170 - Lx8 LINE L1 -183 7290 7214 6 912 958 243 48 4 chr1 42876315 42876546 -154318886 - Lx8 LINE L1 -450 7023 6783 6 912 2750 173 39 58 chr1 42876764 42877348 -154318084 - RMER15 LTR ERVL 0 575 3 6 912 190 304 259 21 chr1 42877403 42877692 -154317740 - L2a LINE L2 -546 2873 2516 6 912 2043 145 152 2 chr1 42877762 42878125 -154317307 - RLTR28 LTR ERVL -24 500 85 6 912 576 42 0 0 chr1 42878125 42878196 -154317236 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 912 2043 145 152 2 chr1 42878196 42878267 -154317165 - RLTR28 LTR ERVL -440 84 2 6 912 581 282 77 62 chr1 42878511 42878787 -154316645 + MTD LTR MaLR 17 287 -120 6 912 493 186 85 0 chr1 42878825 42878943 -154316489 + MTD LTR MaLR 272 399 -20 6 912 939 169 54 10 chr1 42880409 42880612 -154314820 + URR1B DNA MER1_type 8 219 -6 6 912 786 124 20 33 chr1 42880953 42881103 -154314329 - Lx2 LINE L1 0 6997 6850 6 912 231 184 0 0 chr1 42881105 42881143 -154314289 + Lx LINE L1 6475 6512 -142 6 912 234 91 0 0 chr1 42881221 42881254 -154314178 + (GAA)n Simple_repeat Simple_repeat 1 33 0 6 912 207 0 0 0 chr1 42881302 42881325 -154314107 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 912 350 224 62 73 chr1 42881331 42881509 -154313923 + RMER21B LTR ERV1 317 492 -350 6 912 747 196 68 23 chr1 42881866 42882043 -154313389 + Lx9 LINE L1 7124 7308 -336 6 912 2289 134 27 8 chr1 42882388 42882763 -154312669 + RLTR14 LTR ERV1 1 382 0 6 912 297 100 0 0 chr1 42883031 42883081 -154312351 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 6 912 402 21 0 0 chr1 42884696 42884743 -154310689 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 912 1861 116 175 41 chr1 42884863 42885257 -154310175 + LTRIS5 LTR ERV1 1 447 0 6 912 494 323 79 5 chr1 42885717 42885907 -154309525 - MLT1B LTR MaLR -41 349 146 6 912 1178 271 81 8 chr1 42885953 42886310 -154309122 + MTD LTR MaLR 21 403 -16 6 912 412 236 17 94 chr1 42886323 42886440 -154308992 - MLT1B LTR MaLR -281 109 2 6 912 327 346 14 65 chr1 42886765 42886904 -154308528 + MER77 LTR ERVL 256 387 -220 6 912 903 159 0 0 chr1 42886940 42886960 -154308472 + polypyrimidine Low_complexity Low_complexity 144 163 0 6 912 1079 120 0 11 chr1 42886960 42887137 -154308295 + (TCTCCC)n Simple_repeat Simple_repeat 5 179 0 6 912 903 159 0 0 chr1 42887137 42887279 -154308153 + CT-rich Low_complexity Low_complexity 2 143 0 6 912 610 316 39 16 chr1 42887482 42887736 -154307696 + RMER15 LTR ERVL 302 561 -14 6 912 642 302 48 51 chr1 42887767 42888123 -154307309 - RMER5 LTR ERV1 -71 463 109 6 912 333 350 68 17 chr1 42888205 42888382 -154307050 + MER77 LTR ERVL 417 602 -5 6 912 814 234 6 0 chr1 42888767 42888925 -154306507 + ORR1E LTR MaLR 3 161 -198 6 912 2250 107 35 78 chr1 42888930 42889327 -154306105 - RMER20B LTR ERVK -7 620 241 6 912 542 219 0 9 chr1 42889320 42889426 -154306006 - RMER20B LTR ERVK -512 115 11 6 912 265 167 21 0 chr1 42889565 42889613 -154305819 + ORR1E LTR MaLR 329 377 -2 6 912 384 309 74 30 chr1 42889791 42890061 -154305371 + L1ME1 LINE L1 5886 6167 -12 6 912 353 282 56 8 chr1 42891902 42892027 -154303405 + ORR1E LTR MaLR 6 136 -223 6 912 285 224 0 0 chr1 42892379 42892446 -154302986 + L1M4c LINE L1 89 155 -6229 6 912 654 314 80 28 chr1 42892492 42892856 -154302576 + L1M4c LINE L1 252 634 -5750 6 912 724 147 93 0 chr1 42892957 42893086 -154302346 + B1_Mus2 SINE Alu 1 141 -6 6 912 460 199 78 52 chr1 42893152 42893343 -154302089 + L1M4c LINE L1 1875 2070 -4314 6 912 267 263 51 34 chr1 42893382 42893559 -154301873 + L1M4c LINE L1 2157 2336 -4048 6 912 312 292 55 28 chr1 42893603 42893712 -154301720 + L1M4c LINE L1 2440 2551 -3831 6 912 386 225 0 43 chr1 42893902 42893995 -154301437 + L1MB2 LINE L1 5807 5895 -276 6 912 390 91 0 0 chr1 42894029 42894084 -154301348 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 912 348 119 0 0 chr1 42894086 42894145 -154301287 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6 912 601 266 64 12 chr1 42894152 42894323 -154301109 - B3A SINE B2 -18 180 1 6 912 614 265 102 94 chr1 42894405 42894680 -154300752 + B4 SINE B4 2 278 -14 6 912 339 25 0 0 chr1 42894704 42894744 -154300688 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 912 705 282 0 18 chr1 42895203 42895369 -154300063 - RSINE1 SINE B4 0 165 3 6 912 387 0 0 0 chr1 42896880 42896923 -154298509 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 912 841 290 5 0 chr1 42897377 42897577 -154297855 - B3 SINE B2 -15 201 1 6 912 315 0 0 0 chr1 42897605 42897640 -154297792 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 912 262 261 17 17 chr1 42897661 42897778 -154297654 + (TA)n Simple_repeat Simple_repeat 2 118 0 6 912 258 304 14 0 chr1 42898326 42898395 -154297037 + ID4 SINE ID 1 70 -13 6 912 405 0 0 0 chr1 42898397 42898442 -154296990 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 912 990 316 10 21 chr1 42898482 42898770 -154296662 - B4A SINE B4 -6 286 2 6 912 200 135 0 26 chr1 42899219 42899257 -154296175 + A-rich Low_complexity Low_complexity 5 41 0 6 912 899 299 60 38 chr1 42899622 42900126 -154295306 + L1MB3 LINE L1 5642 6156 -27 6 912 280 304 214 43 chr1 42900253 42900487 -154294945 - MLT1F2 LTR MaLR -6 554 281 6 912 430 352 52 55 chr1 42900699 42900970 -154294462 - MLT1C LTR MaLR -8 459 190 6 912 218 161 20 61 chr1 42901007 42901106 -154294326 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 6 912 491 124 34 45 chr1 42901136 42901313 -154294119 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 6 912 12588 158 52 73 chr1 42901422 42902303 -154293129 - L1_Mur3 LINE L1 -1544 4336 3473 6 912 225 0 0 0 chr1 42902303 42902328 -154293104 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 912 12588 158 52 73 chr1 42902328 42903705 -154291727 - L1_Mur3 LINE L1 -2408 3472 2039 6 912 3165 56 2 5 chr1 42903705 42904102 -154291330 - MTA_Mm LTR MaLR 0 396 1 6 912 7721 72 9 69 chr1 42904102 42905270 -154290162 - MTA_Mm-int LTR MaLR 0 1098 1 6 912 405 39 0 0 chr1 42905270 42905321 -154290111 + MTB_Mm LTR MaLR 357 407 0 6 912 12588 149 55 42 chr1 42905321 42906836 -154288596 - L1_Mur3 LINE L1 -3842 2038 543 6 912 665 314 57 26 chr1 42907096 42907212 -154288220 - B3 SINE B2 -3 213 91 6 912 905 38 0 30 chr1 42907212 42907346 -154288086 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 6 912 665 314 57 26 chr1 42907346 42907422 -154288010 - B3 SINE B2 -126 90 15 6 912 414 0 0 0 chr1 42908626 42908672 -154286760 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 912 246 152 22 0 chr1 42909581 42909627 -154285805 - ORR1C2 LTR MaLR 0 374 328 6 912 350 258 20 10 chr1 42909611 42909709 -154285723 - ORR1C2 LTR MaLR -190 194 96 6 912 411 337 69 15 chr1 42910706 42910908 -154284524 - LTR31 LTR ERV1 -15 604 392 6 912 430 206 64 18 chr1 42910974 42911083 -154284349 - MTD LTR MaLR -14 405 292 6 912 611 192 123 0 chr1 42911079 42911209 -154284223 - MTD LTR MaLR -273 146 1 6 912 261 0 0 0 chr1 42912142 42912171 -154283261 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 912 696 176 0 0 chr1 42912174 42912305 -154283127 + (TA)n Simple_repeat Simple_repeat 2 132 0 6 912 1105 126 6 17 chr1 42912982 42913159 -154282273 - B2_Mm2 SINE B2 -19 176 2 6 912 590 314 23 6 chr1 42913313 42913489 -154281943 + B3A SINE B2 10 188 -10 6 912 529 221 161 20 chr1 42914909 42915108 -154280324 + Tigger7 DNA MER2_type 2263 2489 -2 6 912 213 39 0 0 chr1 42915135 42915161 -154280271 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 912 375 121 0 0 chr1 42915609 42915667 -154279765 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 912 206 32 32 0 chr1 42916144 42916175 -154279257 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 912 502 266 34 20 chr1 42916274 42916420 -154279012 - B3A SINE B2 -6 192 45 6 912 256 255 0 0 chr1 42916831 42916882 -154278550 - B3 SINE B2 -164 52 2 6 912 613 263 123 25 chr1 42917616 42917893 -154277539 - MER44A DNA MER2_type -7 332 29 6 912 382 200 90 132 chr1 42918827 42918971 -154276461 - B1_Mur3 SINE Alu -11 138 1 6 912 44 0 0 0 chr1 42920013 42920057 -154275375 + AT_rich Low_complexity Low_complexity 1 44 0 6 912 197 71 34 51 chr1 42920057 42920116 -154275316 + (TTAA)n Simple_repeat Simple_repeat 3 60 0 6 912 41 0 0 0 chr1 42920116 42920157 -154275275 + AT_rich Low_complexity Low_complexity 1 41 0 6 912 863 255 57 0 chr1 42920166 42920192 -154275240 - B3 SINE B2 -12 204 170 6 912 282 29 0 0 chr1 42920192 42920227 -154275205 + (TATG)n Simple_repeat Simple_repeat 4 38 0 6 912 863 255 57 0 chr1 42920227 42920392 -154275040 - B3 SINE B2 -47 169 3 6 912 288 0 0 0 chr1 42920515 42920547 -154274885 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 912 807 274 42 122 chr1 42920547 42921053 -154274379 - Lx9 LINE L1 -188 7456 6988 6 912 1102 128 37 0 chr1 42921053 42921240 -154274192 + B2_Mm2 SINE B2 2 195 0 6 912 807 274 42 122 chr1 42921240 42921282 -154274150 - Lx9 LINE L1 -657 6987 6952 6 912 1918 215 105 131 chr1 42921454 42922762 -154272670 - RMER1A Other Other -10 1020 43 6 912 630 241 151 105 chr1 42922978 42923330 -154272102 + RLTR9A LTR ERVK 1 368 0 6 912 324 0 0 0 chr1 42923949 42923985 -154271447 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 912 390 185 0 0 chr1 42924020 42924085 -154271347 - B3A SINE B2 -132 66 2 6 912 396 246 222 4 chr1 42924091 42924316 -154271116 - L1MB8 LINE L1 -209 5969 5696 6 912 304 299 149 42 chr1 42924382 42924644 -154270788 - L1MB8 LINE L1 -1071 5075 4786 6 912 201 154 0 0 chr1 42924646 42924685 -154270747 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 6 912 364 176 379 10 chr1 42924700 42924803 -154270629 - B1_Mus1 SINE Alu -7 141 1 6 912 403 320 112 41 chr1 42924803 42925807 -154269625 - L1MB8 LINE L1 -1341 4805 3730 6 912 277 270 120 0 chr1 42925845 42925856 -154269576 - PB1D10 SINE Alu -1 116 5 7 912 366 207 34 22 chr1 42925856 42925945 -154269487 - ID_B1 SINE B4 -49 175 86 7 912 21 36 0 0 chr1 42926220 42926248 -154269184 + AT_rich Low_complexity Low_complexity 1 28 0 7 912 238 80 0 39 chr1 42926694 42926746 -154268686 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 912 906 0 198 16 chr1 42926752 42926873 -154268559 - B1_Mus2 SINE Alu 0 147 5 7 912 188 200 14 0 chr1 42927751 42927821 -154267611 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 912 421 256 107 0 chr1 42928822 42928943 -154266489 + ID_B1 SINE B4 91 224 0 7 912 903 184 69 30 chr1 42929033 42929235 -154266197 - B3 SINE B2 -4 212 3 7 912 240 154 0 44 chr1 42929427 42929488 -154265944 - B1_Mur2 SINE Alu -12 135 81 7 912 438 69 0 0 chr1 42930773 42930831 -154264601 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 912 333 0 0 0 chr1 42930831 42930868 -154264564 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 912 372 205 226 26 chr1 42931905 42932020 -154263412 + ORR1D2 LTR MaLR 208 345 -25 7 912 2795 115 20 16 chr1 42932838 42933290 -154262142 - Lx2A LINE L1 0 7008 6555 7 912 1194 229 83 17 chr1 42934976 42935327 -154260105 + ORR1D1 LTR MaLR 1 374 0 7 912 285 325 110 56 chr1 42935929 42936231 -154259201 + ORR1E LTR MaLR 13 364 -15 7 912 246 257 43 0 chr1 42936475 42936545 -154258887 + MIRb SINE MIR 186 258 -4 7 912 564 304 11 80 chr1 42937246 42937421 -154258011 - RSINE1 SINE B4 0 165 3 7 912 306 299 50 17 chr1 42939105 42939224 -154256208 - MIR SINE MIR 0 262 140 7 912 225 0 0 0 chr1 42939532 42939557 -154255875 + (CCA)n Simple_repeat Simple_repeat 1 25 0 7 912 480 262 0 10 chr1 42939661 42939765 -154255667 - B1_Mur1 SINE Alu -12 137 35 7 912 303 234 109 0 chr1 42940116 42940180 -154255252 + ID4_ SINE ID 11 81 -2 7 912 233 241 37 0 chr1 42940271 42940325 -154255107 + ID4_ SINE ID 4 59 -24 7 912 248 260 82 0 chr1 42940589 42940662 -154254770 + ID4_ SINE ID 5 83 0 7 912 207 0 0 0 chr1 42941004 42941027 -154254405 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 912 405 327 0 0 chr1 42941136 42941246 -154254186 + PB1D7 SINE Alu 1 110 -10 7 912 651 88 0 0 chr1 42941268 42941359 -154254073 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 7 912 668 215 107 6 chr1 42941416 42941575 -154253857 - B3 SINE B2 -5 211 37 7 912 336 317 19 0 chr1 42942203 42942307 -154253125 + RSINE1 SINE B4 3 108 -57 7 912 471 288 6 50 chr1 42946862 42946880 -154248552 + ID_B1 SINE B4 70 223 -1 7 912 702 211 21 7 chr1 42946880 42947023 -154248409 + B1_Mus2 SINE Alu 3 147 0 7 912 442 276 9 0 chr1 42947055 42947171 -154248261 + B1F2 SINE Alu 24 140 -9 7 912 815 197 208 0 chr1 42949008 42949186 -154246246 + B3 SINE B2 2 216 0 7 912 256 337 9 106 chr1 42950915 42951028 -154244404 + RSINE1 SINE B4 56 157 -8 7 912 1022 144 118 15 chr1 42951474 42951678 -154243754 - URR1B DNA MER1_type 0 225 1 7 912 22 0 0 0 chr1 42952572 42952594 -154242838 + AT_rich Low_complexity Low_complexity 1 22 0 7 912 28 0 0 0 chr1 42954991 42955019 -154240413 + AT_rich Low_complexity Low_complexity 1 28 0 7 912 513 204 45 15 chr1 42957536 42957670 -154237762 - B1_Mur2 SINE Alu -10 139 2 7 912 214 250 0 0 chr1 42959342 42959390 -154236042 + ID4_ SINE ID 12 59 -24 7 912 21 36 0 0 chr1 42959390 42959418 -154236014 + AT_rich Low_complexity Low_complexity 1 28 0 7 912 300 70 0 0 chr1 42960313 42960356 -154235076 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 912 345 274 40 43 chr1 42961327 42961351 -154234081 + ID_B1 SINE B4 79 166 -58 7 912 679 159 0 0 chr1 42961351 42961464 -154233968 + B1_Mur1 SINE Alu 17 129 -20 7 912 345 274 40 43 chr1 42961464 42961477 -154233955 + ID_B1 SINE B4 167 222 -2 7 912 280 333 0 0 chr1 42961850 42961928 -154233504 + PB1D10 SINE Alu 3 80 -37 7 912 328 284 78 0 chr1 42962920 42963036 -154232396 - L1MA7 LINE L1 -43 6269 6145 7 912 472 253 143 40 chr1 42963052 42963303 -154232129 - L1MA7 LINE L1 -211 6080 5804 7 912 2721 146 110 24 chr1 42963321 42963940 -154231492 + RMER6A LTR ERVK 84 755 -1 7 912 433 229 19 88 chr1 42964738 42964894 -154230538 - L1MA4A LINE L1 -355 5942 5802 7 912 31 58 0 0 chr1 42967027 42967079 -154228353 + AT_rich Low_complexity Low_complexity 1 52 0 7 912 193 328 61 9 chr1 42969782 42969896 -154225536 - L2 LINE L2 -652 2767 2648 7 912 788 246 33 28 chr1 42970756 42970969 -154224463 + B3 SINE B2 1 214 -2 7 912 850 231 0 0 chr1 42971177 42971346 -154224086 - ID_B1 SINE B4 -4 220 52 7 912 636 307 52 44 chr1 42971407 42971770 -154223662 + Tigger7 DNA MER2_type 12 362 -2129 7 912 214 255 20 0 chr1 42971786 42971837 -154223595 + GA-rich Low_complexity Low_complexity 2 53 0 7 912 266 225 141 33 chr1 42971907 42971999 -154223433 + Tigger7 DNA MER2_type 2390 2491 0 7 912 396 59 0 0 chr1 42972639 42972690 -154222742 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 7 912 970 145 0 0 chr1 42972712 42972850 -154222582 - B1_Mus2 SINE Alu -9 138 1 7 912 227 261 0 0 chr1 42972908 42972954 -154222478 + polypyrimidine Low_complexity Low_complexity 4 49 0 7 912 811 258 61 33 chr1 42973031 42973360 -154222072 - L1MA6 LINE L1 -115 6185 5848 7 912 1120 160 5 5 chr1 42973363 42973558 -154221874 + URR1A DNA MER1_type 1 195 -31 7 912 1627 156 13 93 chr1 42973675 42974051 -154221381 + ORR1B1 LTR MaLR 41 386 -8 7 912 197 33 33 0 chr1 42974632 42974662 -154220770 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 7 912 2010 113 7 114 chr1 42976060 42976490 -154218942 - RMER10B LTR ERVL 0 398 15 7 912 383 0 21 0 chr1 42976645 42976692 -154218740 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 912 259 184 61 0 chr1 42977132 42977181 -154218251 + RLTR23 LTR ERV1 379 430 0 7 912 333 318 73 51 chr1 42977225 42977500 -154217932 - L1_Mur3 LINE L1 -2922 3221 2941 7 912 979 232 97 90 chr1 42977524 42977946 -154217486 + MT2A LTR ERVL 1 521 -12 7 912 647 299 188 49 chr1 42977973 42978926 -154216506 - L1_Mur3 LINE L1 -3264 2876 1771 7 912 534 31 0 0 chr1 42978940 42979004 -154216428 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 912 851 285 103 21 chr1 42979041 42979421 -154216011 + RMER15-int LTR ERVL 595 1005 -3994 7 912 627 250 54 0 chr1 42979456 42979604 -154215828 + RMER15-int LTR ERVL 1118 1273 -3726 7 912 753 306 48 59 chr1 42979609 42980085 -154215347 - MT2A LTR ERVL -3 530 60 7 912 313 272 87 16 chr1 42980006 42980133 -154215299 - MTE2a LTR MaLR -242 137 2 7 912 476 270 0 75 chr1 42980135 42980295 -154215137 + RMER15-int LTR ERVL 1272 1419 -3580 7 912 340 214 0 0 chr1 42980325 42980395 -154215037 - MTC LTR MaLR -351 70 1 7 912 3661 201 119 79 chr1 42980395 42981569 -154213863 - MTC-int LTR MaLR 0 1258 38 7 912 773 305 18 0 chr1 42981632 42981858 -154213574 + RMER15-int LTR ERVL 4167 4396 -603 7 912 921 263 66 15 chr1 42981874 42982133 -154213299 + RMER15-int LTR ERVL 4441 4712 -287 7 912 353 259 12 12 chr1 42982210 42982296 -154213136 + RMER15-int LTR ERVL 4888 4973 -26 7 912 345 205 13 186 chr1 42982296 42982452 -154212980 + RMER15 LTR ERVL 1 129 -446 7 912 534 177 40 16 chr1 42982564 42982690 -154212742 + RMER15 LTR ERVL 355 483 -92 7 912 468 0 0 0 chr1 42982951 42983003 -154212429 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 912 226 307 22 80 chr1 42983284 42983422 -154212010 + MIR SINE MIR 108 237 -25 7 912 235 0 0 54 chr1 42983763 42983800 -154211632 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 912 292 216 75 33 chr1 42984150 42984270 -154211162 - Lx8 LINE L1 0 7473 7349 7 912 1125 167 173 7 chr1 42984261 42984533 -154210899 - Lx9 LINE L1 0 7644 7328 7 912 225 276 179 8 chr1 42984625 42984742 -154210690 - L1MD LINE L1 -688 5671 5535 7 912 279 235 129 52 chr1 42984775 42985008 -154210424 + L1ME1 LINE L1 5647 5897 -282 7 912 1324 235 99 20 chr1 42985036 42985379 -154210053 + ORR1D1 LTR MaLR 3 372 -2 7 912 1497 269 54 71 chr1 42985431 42986222 -154209210 + MYSERV16_I-int LTR ERVK 105 774 -1552 7 912 421 293 26 20 chr1 42986238 42986391 -154209041 + RMER4A LTR ERVK 273 426 -40 7 912 4458 199 52 56 chr1 42986391 42987661 -154207771 + MYSERV6-int LTR ERVK 7982 8959 0 7 912 293 283 38 55 chr1 42987769 42987952 -154207480 + RLTR11A2 LTR ERVK 116 295 -232 7 912 686 246 15 56 chr1 42988182 42988380 -154207052 + B3A SINE B2 4 193 -5 7 912 2625 191 203 5 chr1 42990609 42991232 -154204200 + RMER1B Other Other 2 1066 0 7 912 609 185 0 0 chr1 42991264 42991383 -154204049 + (TA)n Simple_repeat Simple_repeat 1 119 0 7 912 954 231 211 50 chr1 42991383 42991501 -154203931 - Lx8 LINE L1 -3 7470 7333 7 912 204 40 0 0 chr1 42991501 42991526 -154203906 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7 14 954 231 211 50 chr1 42991526 42991767 -154203665 - Lx8 LINE L1 -141 7332 7053 7 913 455 286 24 24 chr1 42992056 42992221 -154203211 + GA-rich Low_complexity Low_complexity 6 170 0 7 913 22 0 0 0 chr1 42992952 42992974 -154202458 + AT_rich Low_complexity Low_complexity 1 22 0 7 913 381 319 15 7 chr1 42993243 42993379 -154202053 + MLT1B LTR MaLR 24 160 -230 7 913 1099 126 145 21 chr1 42993380 42993615 -154201817 - RLTR24 LTR ERV1 0 529 266 7 913 235 218 18 0 chr1 42994152 42994207 -154201225 + L1MA5 LINE L1 6192 6247 -53 7 913 1092 308 126 11 chr1 42994506 42994959 -154200473 - MER74A LTR ERVL -12 546 42 7 913 235 237 200 17 chr1 42995312 42995432 -154200000 - MTEb LTR MaLR -36 343 202 7 913 1137 260 69 23 chr1 42995684 42995985 -154199447 + Lx8 LINE L1 6751 7068 -405 7 913 1996 99 79 3 chr1 42995985 42996288 -154199144 - ORR1A3 LTR MaLR 0 326 1 7 913 1137 260 69 23 chr1 42996288 42996333 -154199099 + Lx8 LINE L1 7069 7113 -360 7 913 2941 185 36 8 chr1 42996695 42997284 -154198148 - RMER19C LTR ERVK -4 607 3 7 913 202 179 36 0 chr1 42997597 42997653 -154197779 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 913 959 251 29 40 chr1 42997669 42997947 -154197485 - Lx8 LINE L1 -44 7429 7155 7 913 195 129 0 0 chr1 42998452 42998483 -154196949 + (TCC)n Simple_repeat Simple_repeat 1 31 0 7 913 381 252 14 97 chr1 42998483 42998550 -154196882 - MLT1A LTR MaLR -218 156 93 7 913 1512 220 69 44 chr1 42998550 42998911 -154196521 - ORR1D2 LTR MaLR 0 370 1 8 913 381 246 18 165 chr1 42998911 42999013 -154196419 - MLT1A LTR MaLR -282 92 1 7 913 287 289 113 0 chr1 42999245 42999342 -154196090 - PB1D10 SINE Alu -9 108 1 8 913 298 302 101 86 chr1 42999439 42999747 -154195685 - MLT1A1 LTR MaLR -8 357 44 8 913 1247 129 124 5 chr1 43000482 43000684 -154194748 + URR1A DNA MER1_type 1 226 0 1 913 564 330 0 11 chr1 43000800 43000975 -154194457 + MTEa LTR MaLR 1 173 -206 2 913 3570 15 2 0 chr1 43001032 43001427 -154194005 + MTA_Mm LTR MaLR 1 396 0 3 913 564 284 30 41 chr1 43001500 43001669 -154193763 + MTEa LTR MaLR 213 379 0 2 913 253 263 92 28 chr1 43001878 43002019 -154193413 + ERVL-E-int LTR ERVL 4544 4693 -974 4 913 458 289 62 9 chr1 43003859 43004158 -154191274 - MLT2B1 LTR ERVL -28 539 128 5 913 558 156 19 19 chr1 43004168 43004325 -154191107 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 913 257 275 0 0 chr1 43004325 43004418 -154191014 - MLT2B1 LTR ERVL -461 93 1 5 913 408 333 80 25 chr1 43005003 43005277 -154190155 - MLT1G3 LTR MaLR -28 567 279 7 913 2057 126 28 0 chr1 43005358 43005676 -154189756 - ORR1A2 LTR MaLR 0 327 1 8 913 421 271 44 59 chr1 43006757 43006961 -154188471 - RLTR11B LTR ERVK -20 433 233 9 913 834 225 0 77 chr1 43007036 43007296 -154188136 - RLTR11B LTR ERVK -213 240 1 9 913 239 278 52 8 chr1 43008472 43008592 -154186840 - MIR SINE MIR -54 154 29 1 913 513 0 0 0 chr1 43009238 43009295 -154186137 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 913 289 227 26 13 chr1 43009907 43009983 -154185449 + C-rich Low_complexity Low_complexity 1 77 0 1 913 21 36 0 0 chr1 43010086 43010114 -154185318 + GC_rich Low_complexity Low_complexity 1 28 0 1 913 24 96 0 0 chr1 43010205 43010278 -154185154 + GC_rich Low_complexity Low_complexity 1 73 0 1 913 243 146 0 0 chr1 43010389 43010430 -154185002 + (CCA)n Simple_repeat Simple_repeat 1 41 0 1 913 252 86 0 0 chr1 43010947 43010982 -154184450 + (T)n Simple_repeat Simple_repeat 1 35 0 1 913 216 0 0 0 chr1 43011545 43011569 -154183863 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 913 279 0 0 0 chr1 43012440 43012471 -154182961 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 913 263 250 125 0 chr1 43012515 43012579 -154182853 - ID4_ SINE ID -4 79 8 1 913 198 143 0 0 chr1 43013246 43013281 -154182151 + (CTTA)n Simple_repeat Simple_repeat 1 35 0 2 913 203 0 37 0 chr1 43013407 43013434 -154181998 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 2 913 587 229 28 35 chr1 43013453 43013598 -154181834 - B1_Mur1 SINE Alu 0 149 6 2 913 380 275 43 60 chr1 43013599 43013715 -154181717 - PB1D10 SINE Alu -2 115 2 2 913 213 121 0 0 chr1 43014763 43014796 -154180636 + (ATGGTG)n Simple_repeat Simple_repeat 3 35 0 2 913 378 0 0 0 chr1 43014797 43014839 -154180593 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 913 341 206 0 11 chr1 43015056 43015149 -154180283 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 2 913 576 24 24 12 chr1 43015197 43015280 -154180152 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 913 396 208 0 0 chr1 43016320 43016426 -154179006 + CT-rich Low_complexity Low_complexity 2 107 0 2 913 234 200 0 0 chr1 43017589 43017629 -154177803 + MIR SINE MIR 108 147 -115 2 913 231 167 0 0 chr1 43018080 43018122 -154177310 + GA-rich Low_complexity Low_complexity 1 42 0 3 913 210 343 0 0 chr1 43018533 43018603 -154176829 + ID2 SINE ID 2 71 -12 3 913 235 278 10 40 chr1 43019545 43019646 -154175786 - MLT1A LTR MaLR -212 162 65 3 913 601 262 43 0 chr1 43020011 43020046 -154175386 + L1MDa LINE L1 2456 2493 -4140 3 913 749 11 0 11 chr1 43020046 43020137 -154175295 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 3 913 1500 256 144 55 chr1 43020137 43020561 -154174871 + L1MDa LINE L1 2494 2920 -3617 3 913 442 320 89 6 chr1 43020561 43020740 -154174692 - B3A SINE B2 -2 196 3 3 913 1500 256 145 56 chr1 43020740 43021265 -154174167 + L1MDa LINE L1 2921 3528 -3009 3 913 590 297 76 4 chr1 43021280 43021544 -154173888 + B4A SINE B4 4 286 -6 3 913 396 0 0 0 chr1 43021639 43021683 -154173749 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 913 290 250 63 38 chr1 43021711 43021790 -154173642 - B3 SINE B2 -66 150 70 3 913 503 266 7 59 chr1 43021823 43021975 -154173457 - RSINE1 SINE B4 0 165 22 3 913 537 254 6 70 chr1 43022658 43022815 -154172617 + RLTR33 LTR ERVK 447 593 -85 4 913 1146 232 158 0 chr1 43022899 43023222 -154172210 + MTD LTR MaLR 30 403 -16 4 913 627 272 105 37 chr1 43023234 43023825 -154171607 + L1MDa LINE L1 3826 4456 -2081 3 913 1963 193 56 3 chr1 43023831 43024221 -154171211 + MTC LTR MaLR 3 413 -8 4 913 372 247 106 11 chr1 43024461 43024555 -154170877 + RSINE1 SINE B4 43 145 -20 4 913 598 288 67 12 chr1 43024615 43024946 -154170486 + L1MDa LINE L1 4736 5084 -1453 3 913 1597 157 7 172 chr1 43025118 43025572 -154169860 + ORR1B1 LTR MaLR 1 379 -15 4 913 620 171 164 0 chr1 43025581 43025733 -154169699 - Lx9 LINE L1 -29 7615 7439 4 913 411 211 116 0 chr1 43025760 43025855 -154169577 + B1_Mur4 SINE Alu 44 149 -1 4 913 319 233 123 16 chr1 43026013 43026135 -154169297 + L1MDa LINE L1 5326 5460 -1077 3 913 1061 222 19 23 chr1 43026457 43026715 -154168717 - MTC LTR MaLR -2 419 163 4 913 21 0 0 0 chr1 43026969 43026990 -154168442 + AT_rich Low_complexity Low_complexity 1 21 0 4 913 449 227 22 68 chr1 43027044 43027196 -154168236 - L1MB3 LINE L1 -192 5982 5838 4 913 246 323 53 23 chr1 43027196 43027329 -154168103 + ORR1E LTR MaLR 1 137 -222 5 913 627 332 65 54 chr1 43027542 43027988 -154167444 + MTE-int LTR MaLR 21 471 -1109 5 913 441 225 0 0 chr1 43028070 43028150 -154167282 + B1F SINE Alu 6 85 -64 5 913 1766 133 11 91 chr1 43028152 43028525 -154166907 - RLTR24 LTR ERV1 -168 361 19 5 913 1185 256 31 86 chr1 43028523 43028979 -154166453 - RMER5 LTR ERV1 -91 443 13 5 913 652 23 23 0 chr1 43029088 43029174 -154166258 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 913 1030 271 89 25 chr1 43029174 43029488 -154165944 - MER2 DNA MER2_type -11 334 1 5 913 348 254 19 19 chr1 43029732 43029845 -154165587 - L1MB3 LINE L1 -739 5439 5327 4 913 207 0 0 0 chr1 43029849 43029872 -154165560 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 913 31620 48 6 1 chr1 43029903 43034536 -154160896 - L1Md_F3 LINE L1 -14 6570 1916 5 913 429 286 92 5 chr1 43034532 43034739 -154160693 - L1MB3 LINE L1 -811 5335 5111 4 913 417 238 0 38 chr1 43036089 43036194 -154159238 - PB1D9 SINE Alu -19 101 1 5 913 492 128 0 0 chr1 43037667 43037745 -154157687 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 913 273 75 0 0 chr1 43037745 43037785 -154157647 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 913 242 274 0 10 chr1 43037791 43037887 -154157545 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 913 405 0 0 0 chr1 43037889 43037934 -154157498 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 913 674 188 7 35 chr1 43037935 43038078 -154157354 - MT2A LTR ERVL -71 462 324 6 913 311 306 0 0 chr1 43038102 43038200 -154157232 + MER34 LTR ERV1 374 471 -71 6 913 411 286 46 50 chr1 43038587 43038848 -154156584 - L1MC5 LINE L1 -60 7901 7642 6 913 557 257 92 17 chr1 43038854 43039028 -154156404 - MTE2a LTR MaLR 0 379 193 6 913 265 250 11 91 chr1 43039181 43039269 -154156163 - ID4 SINE ID -1 82 2 6 913 416 321 176 7 chr1 43040222 43040544 -154154888 + MLT1A LTR MaLR 1 374 0 6 913 198 0 0 0 chr1 43041382 43041404 -154154028 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 7 913 264 199 50 116 chr1 43041425 43041539 -154153893 - B1F SINE Alu 0 149 24 7 913 507 33 0 0 chr1 43041694 43041755 -154153677 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 913 413 277 52 86 chr1 43042015 43042189 -154153243 - MLT1A LTR MaLR -206 168 1 7 913 1107 312 93 29 chr1 43042393 43042986 -154152446 - MTE-int LTR MaLR -949 631 1 7 913 960 259 0 5 chr1 43043047 43043260 -154152172 + B3 SINE B2 5 216 0 7 913 512 276 28 22 chr1 43043399 43043577 -154151855 - ORR1E LTR MaLR -162 197 19 7 913 325 271 103 32 chr1 43043796 43043922 -154151510 - L1MC5 LINE L1 -100 7861 7727 7 913 353 102 17 0 chr1 43043944 43044003 -154151429 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 913 4773 88 25 16 chr1 43044131 43044837 -154150595 - L1_Mur1 LINE L1 -2579 3307 2595 7 913 6666 99 7 9 chr1 43044837 43045795 -154149637 + Lx3_Mus LINE L1 6046 7001 -8 8 913 498 33 0 0 chr1 43046262 43046322 -154149110 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 913 531 242 52 22 chr1 43046670 43046805 -154148627 - Lx9 LINE L1 -198 7275 7137 8 913 372 227 68 0 chr1 43046857 43046945 -154148487 - Lx9 LINE L1 -460 7013 6920 8 913 1402 251 72 60 chr1 43047367 43047917 -154147515 - Lx8 LINE L1 -1568 5905 5315 8 913 2798 242 55 31 chr1 43047935 43049390 -154146042 - Lx9 LINE L1 -680 6964 5295 8 913 561 36 24 12 chr1 43049777 43049862 -154145570 + (CA)n Simple_repeat Simple_repeat 2 87 0 8 913 1117 112 41 41 chr1 43050717 43050912 -154144520 + B2_Mm2 SINE B2 1 195 0 8 913 5809 58 8 6 chr1 43050976 43051764 -154143668 - RLTR13C2 LTR ERVK -19 789 1 8 913 898 202 119 0 chr1 43051903 43052096 -154143336 - B3 SINE B2 0 216 1 8 913 2206 113 15 77 chr1 43052227 43052630 -154142802 - RLTR1B LTR ERV1 0 512 135 8 913 668 308 22 5 chr1 43052952 43053174 -154142258 + MER57E1 LTR ERV1 147 372 0 8 913 318 167 0 0 chr1 43053432 43053492 -154141940 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 913 210 71 0 0 chr1 43053491 43053519 -154141913 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 913 1996 234 59 0 chr1 43053607 43054098 -154141334 - MT2A LTR ERVL -8 525 6 9 913 278 29 0 0 chr1 43055682 43055717 -154139715 - U2 snRNA snRNA -153 35 1 9 913 272 317 47 19 chr1 43056433 43056539 -154138893 + MLT1H2 LTR MaLR 44 152 -337 9 913 1752 208 16 65 chr1 43057073 43057444 -154137988 - ORR1E LTR MaLR -6 353 1 9 913 357 371 107 32 chr1 43057597 43057878 -154137554 - MER21B LTR ERV1 -261 602 301 9 913 417 147 14 209 chr1 43057886 43058101 -154137331 - Lx9 LINE L1 -8 7636 7464 9 913 2210 213 11 7 chr1 43058127 43058567 -154136865 - Lx9 LINE L1 -290 7354 6913 9 913 2964 194 17 37 chr1 43058550 43058810 -154136622 - L1_Mur3 LINE L1 -3967 1913 1664 9 913 1917 139 95 0 chr1 43058810 43059126 -154136306 - ORR1A1 LTR MaLR 0 346 1 9 913 2964 215 33 52 chr1 43059126 43059936 -154135496 - L1_Mur3 LINE L1 -4217 1663 855 9 913 344 342 25 0 chr1 43060323 43060443 -154134989 - L1_Mur3 LINE L1 -6898 830 708 9 913 318 269 234 0 chr1 43060643 43060784 -154134648 + L1MEd LINE L1 916 1089 -5030 1 913 374 0 22 0 chr1 43060915 43060961 -154134471 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 913 482 295 15 126 chr1 43061332 43061530 -154133902 + MTE2a LTR MaLR 3 178 -201 1 913 225 265 0 0 chr1 43061530 43061579 -154133853 + GA-rich Low_complexity Low_complexity 4 52 0 1 913 661 217 27 34 chr1 43061998 43062085 -154133347 + MTE2a LTR MaLR 233 321 -58 1 913 3073 96 0 12 chr1 43062085 43062496 -154132936 - MTB_Mm LTR MaLR -1 406 1 1 913 661 217 27 34 chr1 43062496 43062556 -154132876 + MTE2a LTR MaLR 322 379 0 1 913 1108 245 54 12 chr1 43063611 43063851 -154131581 + B4A SINE B4 1 250 -42 1 913 33 56 0 0 chr1 43065327 43065381 -154130051 + AT_rich Low_complexity Low_complexity 1 54 0 1 913 1324 110 16 0 chr1 43065507 43065698 -154129734 - B2_Mm2 SINE B2 0 195 2 1 913 1923 134 91 12 chr1 43065999 43066339 -154129093 - ORR1B2 LTR MaLR 0 367 1 1 913 384 240 28 98 chr1 43066934 43067077 -154128355 - MLT2C2 LTR ERVL -38 521 389 1 913 227 263 115 26 chr1 43069007 43069085 -154126347 - BC1_Mm scRNA scRNA -64 88 4 1 913 392 257 28 0 chr1 43069090 43069199 -154126233 - PB1D10 SINE Alu -5 112 1 1 913 1065 144 23 6 chr1 43069389 43069564 -154125868 - URR1A DNA MER1_type 0 226 49 1 913 243 0 0 0 chr1 43070477 43070504 -154124928 + (T)n Simple_repeat Simple_repeat 1 27 0 1 913 247 333 0 0 chr1 43070635 43070710 -154124722 - L2a LINE L2 0 3426 3352 1 913 249 22 21 62 chr1 43070918 43070966 -154124466 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 913 1658 26 11 0 chr1 43071201 43071392 -154124040 + B2_Mm1a SINE B2 1 193 0 1 913 1159 187 22 35 chr1 43072452 43072679 -154122753 - URR1A DNA MER1_type 0 226 3 1 913 225 0 0 0 chr1 43073479 43073504 -154121928 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 913 320 244 12 47 chr1 43073608 43073694 -154121738 - ID4 SINE ID 0 83 1 1 913 406 289 8 73 chr1 43073778 43073901 -154121531 - MTEa LTR MaLR -8 371 257 1 913 1089 234 109 30 chr1 43074598 43074937 -154120495 - ORR1D2 LTR MaLR -2 368 3 1 913 565 273 43 0 chr1 43074942 43075081 -154120351 - B1_Mur1 SINE Alu 0 149 5 1 913 468 0 0 0 chr1 43075560 43075612 -154119820 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 913 2001 124 31 13 chr1 43075923 43076296 -154119136 + ORR1A2 LTR MaLR 1 386 -8 1 913 466 226 7 101 chr1 43077286 43077424 -154118008 - ORR1A4 LTR MaLR -204 125 1 1 913 348 308 30 15 chr1 43077736 43077871 -154117561 + ORR1E LTR MaLR 1 137 -222 1 913 1414 241 81 32 chr1 43077914 43078261 -154117171 - ORR1D2 LTR MaLR -6 364 1 1 913 4595 235 62 67 chr1 43078261 43078483 -154116949 - ORR1D2-int LTR MaLR 0 1370 1152 1 913 3130 54 20 0 chr1 43078483 43078873 -154116559 - MTB LTR MaLR 0 400 3 1 913 4595 235 62 67 chr1 43078873 43080026 -154115406 - ORR1D2-int LTR MaLR -219 1151 1 1 913 1221 227 71 17 chr1 43080051 43080347 -154115085 - ORR1D2 LTR MaLR -56 314 3 1 913 225 266 14 72 chr1 43080917 43080986 -154114446 - MER2 DNA MER2_type -61 284 220 1 913 429 300 76 15 chr1 43081018 43081150 -154114282 - MER2 DNA MER2_type -200 145 6 1 913 295 248 182 53 chr1 43081269 43081401 -154114031 - MER5A DNA MER1_type -35 154 6 1 913 342 0 0 0 chr1 43082010 43082048 -154113384 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 913 500 247 28 127 chr1 43082107 43082288 -154113144 + RSINE1 SINE B4 3 165 0 1 913 320 339 17 9 chr1 43082650 43082766 -154112666 + RMER15-int LTR ERVL 1997 2113 -2886 1 913 1741 136 147 13 chr1 43082857 43083121 -154112311 + ORR1B2 LTR MaLR 1 283 -84 1 913 2814 64 3 0 chr1 43083121 43083466 -154111966 - ORR1A1 LTR MaLR 0 346 1 1 913 1741 136 147 13 chr1 43083466 43083514 -154111918 + ORR1B2 LTR MaLR 284 354 -13 1 913 2318 295 23 30 chr1 43083682 43084422 -154111010 + RMER15-int LTR ERVL 4155 4889 -110 1 913 333 209 59 108 chr1 43084661 43084763 -154110669 - ORR1D1 LTR MaLR -2 372 276 1 913 6881 119 28 2 chr1 43084763 43085909 -154109523 - Lx4A LINE L1 -379 6679 5488 1 913 332 340 114 66 chr1 43086119 43086805 -154108627 + HAL1 LINE L1 1442 2160 -347 1 913 3564 18 2 0 chr1 43087645 43088040 -154107392 + MTA_Mm LTR MaLR 1 396 0 1 913 290 256 51 0 chr1 43088127 43088205 -154107227 - L2a LINE L2 -41 3385 3304 1 913 395 282 210 37 chr1 43088426 43088698 -154106734 - MER2 DNA MER2_type -5 340 22 1 913 260 333 113 38 chr1 43091361 43091520 -154103912 + MIR3 SINE MIR 21 191 -17 1 913 211 214 24 0 chr1 43091630 43091672 -154103760 - MIRb SINE MIR -14 254 212 1 913 21 36 0 0 chr1 43092246 43092274 -154103158 + AT_rich Low_complexity Low_complexity 1 28 0 1 913 623 309 62 26 chr1 43092384 43092577 -154102855 - MLT1A0 LTR MaLR -4 361 162 1 913 258 32 0 0 chr1 43092612 43092643 -154102789 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 913 372 232 0 0 chr1 43092647 43092716 -154102716 - B4A SINE B4 -2 290 222 1 913 270 0 0 0 chr1 43092717 43092747 -154102685 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 913 384 289 53 23 chr1 43092749 43092880 -154102552 - MLT1A0 LTR MaLR -273 135 1 1 913 542 300 121 9 chr1 43093391 43093623 -154101809 - MER2 DNA MER2_type -73 272 15 1 913 217 128 21 21 chr1 43093691 43093739 -154101693 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 913 347 211 0 0 chr1 43093840 43093897 -154101535 - RSINE1 SINE B4 -89 76 20 1 913 222 255 0 21 chr1 43093969 43094017 -154101415 + B4A SINE B4 1 47 -245 1 913 677 269 8 57 chr1 43094024 43094217 -154101215 + B3 SINE B2 20 205 -11 1 913 1290 304 65 40 chr1 43094885 43095365 -154100067 - MER21B LTR ERV1 -128 735 244 1 913 959 48 8 0 chr1 43095431 43095556 -154099876 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 1 913 1837 128 3 155 chr1 43096050 43096438 -154098994 + ORR1A4 LTR MaLR 1 329 0 1 913 948 228 169 6 chr1 43097518 43097844 -154097588 + MTEa LTR MaLR 1 379 0 1 913 789 11 0 0 chr1 43099462 43099552 -154095880 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 913 294 29 0 0 chr1 43100247 43100282 -154095150 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 913 2455 144 47 15 chr1 43100298 43100706 -154094726 - MTC LTR MaLR 0 421 1 1 913 312 295 112 52 chr1 43100786 43101027 -154094405 + L1MB3 LINE L1 5879 6136 -47 1 913 1044 187 65 5 chr1 43101027 43101226 -154094206 + B3 SINE B2 1 211 -5 1 913 422 289 61 0 chr1 43101253 43101367 -154094065 + RSINE1 SINE B4 4 124 -41 1 913 23 0 0 0 chr1 43103033 43103056 -154092376 + AT_rich Low_complexity Low_complexity 1 23 0 1 913 347 277 218 34 chr1 43103469 43103713 -154091719 - B4A SINE B4 -2 290 2 1 913 210 143 0 0 chr1 43105829 43105864 -154089568 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 913 478 185 3 4 chr1 43105868 43105950 -154089482 - RSINE1 SINE B4 -210 82 2 1 913 525 206 273 0 chr1 43106875 43107040 -154088392 - B3 SINE B2 -6 210 1 1 913 201 307 202 0 chr1 43107139 43107253 -154088179 - MIR3 SINE MIR -3 205 69 1 913 422 209 152 23 chr1 43108037 43108169 -154087263 - B1F1 SINE Alu 0 149 1 1 913 277 291 0 0 chr1 43109306 43109361 -154086071 - MER2 DNA MER2_type -276 69 15 1 913 523 269 92 0 chr1 43112399 43112540 -154082892 + RSINE1 SINE B4 2 155 -10 1 913 1041 168 32 0 chr1 43112793 43112983 -154082449 + URR1A DNA MER1_type 30 225 -1 1 913 246 325 55 18 chr1 43115016 43115179 -154080253 + L1MA5 LINE L1 5931 6099 -201 1 913 368 250 140 39 chr1 43115333 43115512 -154079920 - B3 SINE B2 -12 204 8 1 913 354 267 55 94 chr1 43117474 43117602 -154077830 + MER20 DNA MER1_type 93 215 -4 1 913 820 269 67 0 chr1 43119589 43119842 -154075590 - MER2 DNA MER2_type -1 344 75 1 913 201 241 0 0 chr1 43119909 43119963 -154075469 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 913 986 134 201 0 chr1 43120411 43120590 -154074842 + B3 SINE B2 2 216 0 1 913 779 161 15 0 chr1 43120621 43120758 -154074674 + B1_Mur4 SINE Alu 6 144 -6 1 913 3623 18 0 0 chr1 43121020 43121416 -154074016 - MTA_Mm LTR MaLR 0 396 1 1 913 351 0 0 0 chr1 43121680 43121719 -154073713 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 913 277 233 55 0 chr1 43121725 43121798 -154073634 - ID4 SINE ID -4 79 3 1 913 227 238 49 12 chr1 43122259 43122340 -154073092 + MLT1A LTR MaLR 48 131 -243 1 913 555 16 0 0 chr1 43122583 43122647 -154072785 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 914 369 301 28 7 chr1 43123298 43123442 -154071990 - B1F SINE Alu -2 147 1 1 914 1197 149 50 32 chr1 43125031 43125252 -154070180 + URR1B DNA MER1_type 1 225 0 1 914 6841 52 24 20 chr1 43125460 43126342 -154069090 - L1Md_F2 LINE L1 0 6582 5698 1 914 433 330 61 18 chr1 43126586 43126814 -154068618 + MER2 DNA MER2_type 78 315 -30 1 914 468 0 0 0 chr1 43126913 43126965 -154068467 + (CATA)n Simple_repeat Simple_repeat 4 55 0 1 914 2026 140 95 9 chr1 43127098 43127436 -154067996 + ORR1B2 LTR MaLR 1 367 0 1 914 209 216 20 0 chr1 43128023 43128074 -154067358 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 914 296 175 200 0 chr1 43128101 43128181 -154067251 - B3A SINE B2 -101 97 2 1 914 1403 48 10 31 chr1 43128599 43128792 -154066640 - B2_Mm2 SINE B2 -6 189 1 1 914 195 269 39 0 chr1 43129057 43129109 -154066323 - MIRm SINE MIR -1 275 222 1 914 1177 148 41 14 chr1 43129643 43129862 -154065570 + URR1B DNA MER1_type 1 225 0 1 914 1003 269 85 14 chr1 43131361 43131726 -154063706 + L1MC1 LINE L1 5827 6217 -116 1 914 495 0 0 0 chr1 43133084 43133139 -154062293 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 914 280 338 52 15 chr1 43133798 43133933 -154061499 + MLT1A0 LTR MaLR 20 159 -206 1 914 283 276 28 19 chr1 43134409 43134516 -154060916 + PB1D10 SINE Alu 10 117 0 2 914 21 36 0 0 chr1 43135225 43135253 -154060179 + AT_rich Low_complexity Low_complexity 1 28 0 2 914 964 215 44 0 chr1 43135363 43135568 -154059864 + B3 SINE B2 2 215 -1 2 914 180 0 0 0 chr1 43135573 43135593 -154059839 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 914 310 244 66 11 chr1 43135629 43135720 -154059712 - PB1D10 SINE Alu -9 108 13 2 914 342 0 0 0 chr1 43136293 43136331 -154059101 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 914 431 242 0 29 chr1 43136421 43136523 -154058909 + Lx8 LINE L1 6408 6506 -967 2 914 451 321 22 0 chr1 43136601 43136738 -154058694 + RSINE1 SINE B4 3 142 -23 2 914 402 267 95 18 chr1 43137585 43137611 -154057821 - B2_Mm2 SINE B2 -9 186 162 2 914 219 114 0 0 chr1 43137611 43137646 -154057786 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 914 568 220 158 7 chr1 43137646 43137787 -154057645 - B3A SINE B2 -34 164 6 2 914 606 167 10 0 chr1 43138018 43138120 -154057312 - MT2B LTR ERVL -342 259 157 2 914 1136 165 5 14 chr1 43138113 43138334 -154057098 - ORR1A3-int LTR MaLR -1403 560 342 2 914 445 286 42 21 chr1 43138556 43138745 -154056687 + L1ME3A LINE L1 4575 4767 -1379 2 914 354 287 10 19 chr1 43138752 43138855 -154056577 + PB1 SINE Alu 1 102 -25 2 914 330 273 55 68 chr1 43138985 43139205 -154056227 + L1ME3A LINE L1 5272 5488 -676 2 914 1090 82 0 33 chr1 43139207 43139359 -154056073 + B1_Mus2 SINE Alu 1 147 0 2 914 581 195 17 50 chr1 43139389 43139508 -154055924 + PB1D9 SINE Alu 1 115 -5 2 914 201 74 0 0 chr1 43139515 43139542 -154055890 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 2 914 225 374 0 0 chr1 43139662 43139745 -154055687 + L1ME3A LINE L1 5492 5574 -666 2 914 256 235 93 93 chr1 43139822 43139840 -154055592 - PB1D9 SINE Alu -1 119 12 2 914 456 200 11 0 chr1 43139840 43139930 -154055502 - ID_B1 SINE B4 -41 183 93 2 914 402 317 90 21 chr1 43140144 43140289 -154055143 + RSINE1 SINE B4 11 165 0 2 914 298 300 47 52 chr1 43140324 43140509 -154054923 + L1ME3A LINE L1 5904 6091 -82 2 914 945 255 191 3 chr1 43140509 43140824 -154054608 - ORR1D1 LTR MaLR 0 374 1 2 914 298 300 47 52 chr1 43140824 43140849 -154054583 + L1ME3A LINE L1 6092 6113 -60 2 914 23 68 0 0 chr1 43141611 43141655 -154053777 + AT_rich Low_complexity Low_complexity 1 44 0 2 914 3536 59 11 0 chr1 43141701 43142143 -154053289 + LTRIS5 LTR ERV1 1 447 0 2 914 540 282 114 43 chr1 43142179 43142302 -154053130 - B4 SINE B4 -18 274 75 2 914 4380 88 7 3 chr1 43142302 43142884 -154052548 - MT2B2 LTR ERVL 0 584 1 2 914 542 247 18 83 chr1 43142884 43143045 -154052387 - B4A SINE B4 -134 158 2 2 914 317 183 16 16 chr1 43143082 43143143 -154052289 + Lx8 LINE L1 6595 6655 -818 2 914 240 35 0 0 chr1 43143445 43143474 -154051958 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 914 224 133 0 43 chr1 43143701 43143748 -154051684 + G-rich Low_complexity Low_complexity 5 49 0 2 914 287 289 44 0 chr1 43144004 43144094 -154051338 + PB1 SINE Alu 1 94 -33 2 914 462 222 155 13 chr1 43144231 43144386 -154051046 - B3A SINE B2 -17 181 5 2 914 267 31 0 0 chr1 43145012 43145044 -154050388 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 914 423 0 0 0 chr1 43145044 43145090 -154050342 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 914 413 289 84 28 chr1 43145102 43145209 -154050223 - PB1D7 SINE Alu -2 115 3 2 914 395 264 11 0 chr1 43145217 43145308 -154050124 - PB1D10 SINE Alu -1 116 25 2 914 247 314 68 48 chr1 43146138 43146285 -154049147 + MER2B DNA MER2_type 187 336 0 2 914 228 35 0 0 chr1 43146679 43146708 -154048724 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 914 693 65 0 0 chr1 43146708 43146800 -154048632 - B1_Mus2 SINE Alu -9 138 47 2 914 243 0 0 0 chr1 43147239 43147266 -154048166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 914 775 241 45 10 chr1 43147273 43147474 -154047958 - ID_B1 SINE B4 -16 208 1 2 914 40 105 0 0 chr1 43149242 43149394 -154046038 + GC_rich Low_complexity Low_complexity 1 152 0 2 914 267 229 29 0 chr1 43150259 43150329 -154045103 - MIRc SINE MIR -140 128 57 2 914 672 211 55 24 chr1 43150699 43150864 -154044568 - B3 SINE B2 0 216 47 2 914 400 20 0 0 chr1 43151291 43151341 -154044091 + B1_Mur4 SINE Alu 90 139 -11 2 914 210 71 0 0 chr1 43151341 43151369 -154044063 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 914 1220 54 0 0 chr1 43151480 43151627 -154043805 - B1_Mus1 SINE Alu 0 148 2 2 914 742 253 6 6 chr1 43152546 43152713 -154042719 + B3 SINE B2 34 200 -16 2 914 210 37 0 0 chr1 43152716 43152743 -154042689 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 914 276 196 0 2 chr1 43152863 43152920 -154042512 - PB1 SINE Alu -2 147 75 2 914 222 128 0 0 chr1 43153545 43153584 -154041848 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 914 24 0 0 0 chr1 43156150 43156174 -154039258 + GC_rich Low_complexity Low_complexity 1 24 0 2 914 225 326 154 8 chr1 43156407 43156537 -154038895 - MER5A DNA MER1_type -40 149 1 2 914 22 0 0 0 chr1 43156854 43156876 -154038556 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 441 0 0 0 chr1 43156989 43157038 -154038394 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 914 198 0 0 0 chr1 43158152 43158174 -154037258 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2 914 33169 75 23 56 chr1 43158205 43158920 -154036512 - Lx3_Mus LINE L1 -529 6480 5801 2 914 243 0 0 0 chr1 43158920 43158947 -154036485 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 914 1216 54 0 0 chr1 43158949 43159096 -154036336 - B1_Mus2 SINE Alu 0 147 1 2 914 33169 84 49 17 chr1 43159096 43164397 -154031035 - Lx3_Mus LINE L1 -83 5803 14 2 914 3164 146 105 19 chr1 43164477 43165057 -154030375 + RMER1B Other Other 435 1064 -2 2 914 236 300 133 0 chr1 43165159 43165249 -154030183 - L2 LINE L2 -771 2648 2547 2 914 521 303 80 58 chr1 43166178 43166402 -154029030 - ORR1D2 LTR MaLR -2 368 140 2 914 1150 153 104 0 chr1 43166404 43166606 -154028826 + URR1B DNA MER1_type 3 225 0 2 914 1256 224 88 47 chr1 43167314 43167656 -154027776 - ORR1D2 LTR MaLR -2 368 13 2 914 1098 117 25 65 chr1 43169265 43169420 -154026012 + B2_Mm2 SINE B2 3 153 -42 2 914 362 57 0 19 chr1 43169420 43169474 -154025958 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 914 1098 117 25 65 chr1 43169474 43169519 -154025913 + B2_Mm2 SINE B2 154 195 0 2 914 360 0 0 0 chr1 43169780 43169820 -154025612 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 914 201 184 0 26 chr1 43170217 43170256 -154025176 + CT-rich Low_complexity Low_complexity 3 40 0 2 914 187 219 188 0 chr1 43170352 43170416 -154025016 + L4 LINE RTE 847 922 -1107 2 914 835 244 79 43 chr1 43173581 43173821 -154021611 - ORR1D1 LTR MaLR -3 371 119 2 914 251 0 0 56 chr1 43173821 43173857 -154021575 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 2 914 835 244 79 43 chr1 43173857 43173894 -154021538 - ORR1D1 LTR MaLR -256 118 84 2 914 663 165 293 9 chr1 43173899 43174183 -154021249 - ORR1D1 LTR MaLR 0 384 1 2 914 5729 200 96 11 chr1 43174183 43175442 -154019990 - ORR1D1-int LTR MaLR 0 1370 5 2 914 319 84 11 0 chr1 43175447 43175495 -154019937 - MT2A LTR ERVL -2 552 489 2 914 316 242 125 10 chr1 43175495 43175591 -154019841 - MT2A LTR ERVL -191 342 236 2 914 543 281 24 47 chr1 43175593 43175769 -154019663 + L1M2 LINE L1 2627 2796 -3347 2 914 3865 28 5 0 chr1 43175769 43176203 -154019229 - RLTR10C LTR ERVK 0 436 1 2 914 543 281 24 47 chr1 43176203 43176239 -154019193 + L1M2 LINE L1 2797 2834 -3309 2 914 35 78 0 0 chr1 43176263 43176340 -154019092 + AT_rich Low_complexity Low_complexity 1 77 0 2 914 559 300 29 75 chr1 43176380 43176621 -154018811 + Lx8 LINE L1 6791 7020 -453 2 914 402 250 25 9 chr1 43176695 43176824 -154018608 + L1M2 LINE L1 3491 3657 -2486 2 914 270 0 0 0 chr1 43176831 43176861 -154018571 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 914 684 215 133 9 chr1 43176893 43177096 -154018336 + ORR1D1 LTR MaLR 68 337 -57 2 914 258 176 122 0 chr1 43177104 43177178 -154018254 - Lx9 LINE L1 -2 7642 7560 2 914 409 223 52 10 chr1 43177178 43177288 -154018144 + ORR1D1 LTR MaLR 254 374 0 2 914 1470 254 45 0 chr1 43177338 43177672 -154017760 - ORR1E LTR MaLR -4 355 7 2 914 1634 268 154 25 chr1 43177727 43178065 -154017367 + Lx8 LINE L1 6704 7108 -365 2 914 2793 69 31 119 chr1 43178065 43178262 -154017170 + MTB_Mm LTR MaLR 1 195 -212 2 914 1619 32 11 0 chr1 43178262 43178452 -154016980 + B2_Mm1a SINE B2 2 193 0 2 914 2793 69 31 119 chr1 43178452 43178699 -154016733 + MTB_Mm LTR MaLR 196 406 -1 2 914 1634 268 154 25 chr1 43178699 43179042 -154016390 + Lx8 LINE L1 7109 7473 0 2 914 243 324 13 13 chr1 43179338 43179413 -154016019 + B1F SINE Alu 1 75 -74 2 914 411 264 0 0 chr1 43179456 43179634 -154015798 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 914 251 306 0 0 chr1 43180790 43180862 -154014570 + ID4 SINE ID 12 83 0 2 914 225 0 0 0 chr1 43181300 43181325 -154014107 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 914 413 241 0 0 chr1 43181835 43181914 -154013518 + ID4 SINE ID 1 79 -4 2 914 181 304 18 0 chr1 43182033 43182089 -154013343 - MER5B DNA MER1_type -11 167 111 2 914 736 206 83 49 chr1 43182183 43182387 -154013045 - B3 SINE B2 -5 211 1 2 914 342 0 0 0 chr1 43182499 43182537 -154012895 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 914 297 298 43 0 chr1 43182710 43182804 -154012628 + MER82 DNA MER2_type 4 101 -552 2 914 795 156 0 0 chr1 43183075 43183203 -154012229 + B1_Mur4 SINE Alu 2 129 -21 2 914 301 394 43 7 chr1 43183204 43183342 -154012090 + MER82 DNA MER2_type 448 590 -63 2 914 1584 200 132 2 chr1 43184109 43184480 -154010952 + MTD LTR MaLR 1 399 -20 2 914 1669 102 27 8 chr1 43185394 43185640 -154009792 + L1_Mus4 LINE L1 6376 6628 -8 2 914 1350 67 0 0 chr1 43185640 43185818 -154009614 + (GAGAA)n Simple_repeat Simple_repeat 2 179 0 2 914 268 291 144 47 chr1 43186519 43186683 -154008749 - MIRc SINE MIR -91 185 8 2 914 427 299 15 26 chr1 43186895 43187241 -154008191 + C-rich Low_complexity Low_complexity 1 341 0 2 914 214 224 0 69 chr1 43188044 43188116 -154007316 + G-rich Low_complexity Low_complexity 3 69 0 2 914 45 55 0 0 chr1 43188926 43188999 -154006433 + AT_rich Low_complexity Low_complexity 1 73 0 2 914 497 284 40 69 chr1 43189086 43189260 -154006172 + Tigger7 DNA MER2_type 1 169 -2322 3 914 1253 119 11 0 chr1 43189279 43189455 -154005977 + B2_Mm1t SINE B2 1 178 -15 3 914 327 102 324 36 chr1 43189488 43189599 -154005833 + B2_Mm2 SINE B2 47 189 -6 3 914 326 292 167 0 chr1 43189599 43189719 -154005713 + Tigger7 DNA MER2_type 177 316 -2175 3 914 441 318 57 19 chr1 43189895 43190052 -154005380 + RSINE1 SINE B4 2 164 -1 3 914 237 108 0 0 chr1 43190057 43190094 -154005338 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 914 215 188 125 0 chr1 43190620 43190668 -154004764 - ID4_ SINE ID -28 55 2 3 914 328 232 52 10 chr1 43190811 43190907 -154004525 - PB1D10 SINE Alu -17 100 1 3 914 589 299 0 0 chr1 43191579 43191716 -154003716 - B1F2 SINE Alu -6 143 7 3 914 282 369 13 51 chr1 43191716 43191733 -154003699 - B4A SINE B4 -68 221 74 3 914 447 245 19 19 chr1 43192253 43192357 -154003075 + PB1 SINE Alu 17 120 -7 3 914 513 314 41 25 chr1 43192376 43192572 -154002860 + MLT2C2 LTR ERVL 58 256 -208 3 914 354 155 6 120 chr1 43193372 43193742 -154001690 + (GCTG)n Simple_repeat Simple_repeat 1 327 0 3 914 595 239 116 0 chr1 43193967 43194105 -154001327 + MTD LTR MaLR 12 165 -254 3 914 222 304 58 0 chr1 43194498 43194567 -154000865 + ID4_ SINE ID 6 78 -5 3 914 441 0 0 0 chr1 43194726 43194775 -154000657 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 914 207 333 0 0 chr1 43194775 43194832 -154000600 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 914 346 280 96 56 chr1 43194836 43194961 -154000471 - B4 SINE B4 0 292 163 3 914 285 29 0 0 chr1 43195693 43195727 -153999705 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 3 914 412 242 22 11 chr1 43195801 43195893 -153999539 - B1_Mm SINE Alu -51 96 4 3 914 225 333 29 29 chr1 43196316 43196384 -153999048 + RMER30 DNA MER1_type 135 202 0 3 914 341 312 18 9 chr1 43196480 43196590 -153998842 - PB1D10 SINE Alu 0 117 7 3 914 406 274 0 0 chr1 43197219 43197303 -153998129 - B1_Mur3 SINE Alu -63 86 3 3 914 192 40 0 0 chr1 43197318 43197343 -153998089 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 914 917 79 135 0 chr1 43197346 43197472 -153997960 - B1_Mus2 SINE Alu 0 147 5 3 914 335 145 12 0 chr1 43197529 43197612 -153997820 + GA-rich Low_complexity Low_complexity 1 84 0 3 914 285 320 173 22 chr1 43197961 43198140 -153997292 + MER2 DNA MER2_type 31 236 -109 3 914 317 231 141 33 chr1 43198258 43198283 -153997149 - ID_B1 SINE B4 -8 216 127 3 914 467 116 233 0 chr1 43198283 43198369 -153997063 - B1_Mur3 SINE Alu -33 116 11 3 914 1329 199 96 19 chr1 43198858 43199171 -153996261 + MTD LTR MaLR 83 419 0 3 914 210 258 46 46 chr1 43199758 43199823 -153995609 - MIRc SINE MIR -140 128 64 3 914 503 241 211 6 chr1 43200120 43200295 -153995137 - ORR1D1 LTR MaLR -4 370 160 3 914 2842 129 26 5 chr1 43200746 43201167 -153994265 + RLTR23 LTR ERV1 1 430 0 3 914 239 297 98 9 chr1 43201808 43201829 -153993603 - B1_Mus2 SINE Alu -21 126 103 3 914 265 24 48 0 chr1 43201829 43201871 -153993561 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 914 239 297 98 9 chr1 43201871 43201961 -153993471 - B1_Mus2 SINE Alu -45 102 5 3 914 771 313 62 0 chr1 43202924 43203167 -153992265 + MER2 DNA MER2_type 19 276 -69 3 914 247 264 14 0 chr1 43203320 43203392 -153992040 + GA-rich Low_complexity Low_complexity 2 74 0 3 914 830 315 5 0 chr1 43204302 43204521 -153990911 + MER44B DNA MER2_type 1 220 -330 3 914 764 217 0 7 chr1 43204978 43205122 -153990310 - B1_Mur1 SINE Alu -2 147 5 3 914 248 279 121 64 chr1 43205707 43205864 -153989568 + LTR31 LTR ERV1 454 619 0 3 914 229 213 43 0 chr1 43207792 43207839 -153987593 - MIR SINE MIR -116 146 98 3 914 265 300 125 54 chr1 43209033 43209296 -153986136 + MTEb LTR MaLR 87 379 0 3 914 185 361 29 49 chr1 43211726 43211828 -153983604 - MIR3 SINE MIR -1 207 108 3 914 330 256 100 69 chr1 43212966 43213096 -153982336 - ORR1E LTR MaLR -40 339 181 3 914 285 51 0 0 chr1 43213142 43213181 -153982251 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 914 401 242 54 70 chr1 43213204 43213333 -153982099 - ORR1E LTR MaLR -168 191 65 3 914 2006 187 21 8 chr1 43214157 43214535 -153980897 + ORR1C2 LTR MaLR 1 383 -1 3 914 227 270 0 43 chr1 43215082 43215175 -153980257 + GA-rich Low_complexity Low_complexity 2 90 0 3 914 402 289 9 9 chr1 43215608 43215723 -153979709 - PB1D10 SINE Alu -1 116 2 3 914 364 206 29 0 chr1 43216128 43216196 -153979236 + B3 SINE B2 147 216 0 3 914 257 317 192 0 chr1 43217978 43218139 -153977293 - B3A SINE B2 -6 192 1 3 914 256 330 10 21 chr1 43218147 43218243 -153977189 - MLT1A1 LTR MaLR -312 96 2 3 914 1658 181 79 6 chr1 43218269 43218586 -153976846 + ORR1C2 LTR MaLR 7 346 -38 3 914 432 0 0 0 chr1 43218720 43218768 -153976664 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 914 292 290 115 46 chr1 43219383 43219513 -153975919 + B1F SINE Alu 9 147 -2 3 914 22 0 0 0 chr1 43220080 43220102 -153975330 + GC_rich Low_complexity Low_complexity 1 22 0 3 914 1075 245 124 24 chr1 43221615 43221954 -153973478 - MTEa LTR MaLR -5 374 2 3 914 180 261 28 42 chr1 43222211 43222283 -153973149 - L2b LINE L2 -224 3151 3081 3 914 1371 65 54 5 chr1 43222783 43222969 -153972463 - B2_Mm2 SINE B2 0 195 1 3 914 325 276 58 74 chr1 43223184 43223548 -153971884 + L1MC5 LINE L1 7553 7910 -51 3 914 480 285 58 36 chr1 43223558 43223835 -153971597 + L1MC4a LINE L1 5582 5864 -2018 3 914 201 74 0 0 chr1 43226342 43226369 -153969063 + (A)n Simple_repeat Simple_repeat 1 27 0 3 914 261 0 0 0 chr1 43227072 43227101 -153968331 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 914 223 281 47 0 chr1 43227104 43227168 -153968264 - ID4 SINE ID -3 80 14 3 914 249 289 11 0 chr1 43228312 43228402 -153967030 + CT-rich Low_complexity Low_complexity 2 92 0 3 914 378 0 0 0 chr1 43228543 43228585 -153966847 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 914 504 0 0 0 chr1 43230046 43230102 -153965330 + (TTA)n Simple_repeat Simple_repeat 2 57 0 3 914 275 296 0 0 chr1 43231725 43231796 -153963636 + ID4 SINE ID 3 73 -10 3 914 736 269 78 48 chr1 43231993 43232262 -153963170 + L1MB2 LINE L1 5629 5905 -266 3 914 266 293 0 0 chr1 43232518 43232600 -153962832 + MLT2B4 LTR ERVL 6 87 -469 3 914 251 253 70 50 chr1 43232622 43232722 -153962710 - ORR1E LTR MaLR -12 347 246 3 914 432 302 68 5 chr1 43233034 43233240 -153962192 + MLT2B4 LTR ERVL 107 325 -231 3 914 243 295 16 0 chr1 43233300 43233361 -153962071 + MLT2B4 LTR ERVL 426 487 -72 3 914 754 245 68 28 chr1 43233381 43233629 -153961803 - MER2 DNA MER2_type -1 344 87 3 914 189 107 0 0 chr1 43233633 43233661 -153961771 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 3 914 2639 293 36 54 chr1 43233883 43234832 -153960600 + Lx8 LINE L1 6347 7278 -195 3 914 506 109 11 0 chr1 43234886 43234978 -153960454 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 3 914 393 216 0 0 chr1 43234988 43235076 -153960356 + GA-rich Low_complexity Low_complexity 1 88 0 3 914 537 272 6 66 chr1 43235750 43235931 -153959501 + MER34A LTR ERV1 4 173 -398 3 914 254 286 45 64 chr1 43236056 43236213 -153959219 + MER34A LTR ERV1 370 523 -48 3 914 954 285 119 16 chr1 43236404 43236792 -153958640 - MLT1C LTR MaLR -33 434 7 3 914 704 266 188 0 chr1 43237117 43237388 -153958044 + MER2B DNA MER2_type 1 322 -14 3 914 298 278 14 27 chr1 43239090 43239164 -153956268 - RSINE1 SINE B4 0 165 93 3 914 216 158 0 0 chr1 43239264 43239302 -153956130 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 914 761 213 0 4 chr1 43240213 43240454 -153954978 + CT-rich Low_complexity Low_complexity 1 240 0 3 914 1626 108 15 201 chr1 43240480 43240884 -153954548 - ORR1A4 LTR MaLR 0 329 1 3 914 257 260 27 0 chr1 43242121 43242194 -153953238 - L1MC4 LINE L1 -1312 6730 6656 3 914 987 32 0 0 chr1 43242743 43242866 -153952566 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 914 368 306 75 53 chr1 43242891 43243157 -153952275 - B4 SINE B4 -16 276 5 3 914 362 234 124 52 chr1 43243482 43243635 -153951797 + RMER10A LTR ERVL 11 174 -268 3 914 309 135 0 0 chr1 43243637 43243689 -153951743 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 3 914 340 271 30 112 chr1 43243689 43243984 -153951448 + RMER10A LTR ERVL 164 434 -8 3 914 976 137 17 0 chr1 43244182 43244357 -153951075 + CT-rich Low_complexity Low_complexity 2 179 0 3 914 352 314 56 56 chr1 43245178 43245357 -153950075 + MLT1D LTR MaLR 265 443 -62 3 914 485 297 69 37 chr1 43245492 43245681 -153949751 + MER2 DNA MER2_type 151 345 0 3 914 254 307 30 0 chr1 43245697 43245798 -153949634 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 914 1254 108 38 0 chr1 43247040 43247226 -153948206 + B2_Mm1t SINE B2 1 193 0 3 914 335 217 112 0 chr1 43248839 43249012 -153946420 + MTD LTR MaLR 203 421 0 3 914 22 0 0 0 chr1 43249035 43249057 -153946375 + AT_rich Low_complexity Low_complexity 1 22 0 3 914 401 340 6 24 chr1 43249508 43249674 -153945758 + RSINE1 SINE B4 2 164 -1 3 914 26 50 0 0 chr1 43250036 43250076 -153945356 + AT_rich Low_complexity Low_complexity 1 40 0 3 914 587 269 133 27 chr1 43250237 43250493 -153944939 + B4A SINE B4 1 283 -9 3 914 7258 109 22 8 chr1 43250737 43251841 -153943591 + Lx LINE L1 5539 6654 0 3 914 201 121 0 0 chr1 43252292 43252325 -153943107 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 914 449 276 160 0 chr1 43252349 43252505 -153942927 - B3A SINE B2 -17 181 1 3 914 207 108 27 0 chr1 43253441 43253478 -153941954 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 915 589 191 26 0 chr1 43254442 43254557 -153940875 + ORR1C2 LTR MaLR 52 169 -198 4 915 852 193 3 0 chr1 43254572 43254911 -153940521 + CT-rich Low_complexity Low_complexity 1 340 0 4 915 872 186 45 15 chr1 43254917 43255165 -153940267 + ORR1C2 LTR MaLR 174 384 0 4 915 255 270 0 0 chr1 43256094 43256157 -153939275 + MER34 LTR ERV1 408 470 -72 4 915 946 61 49 0 chr1 43257192 43257356 -153938076 + (GGAA)n Simple_repeat Simple_repeat 4 175 0 4 915 220 188 29 0 chr1 43257368 43257383 -153938049 + polypurine Low_complexity Low_complexity 4 19 0 4 915 1124 79 17 11 chr1 43257383 43257562 -153937870 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 915 220 188 29 0 chr1 43257562 43257596 -153937836 + polypurine Low_complexity Low_complexity 20 54 0 4 915 1058 58 41 0 chr1 43257596 43257768 -153937664 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 4 915 220 188 29 0 chr1 43257768 43257786 -153937646 + polypurine Low_complexity Low_complexity 55 72 0 4 915 1049 83 28 9 chr1 43257788 43258139 -153937293 + (GGAA)n Simple_repeat Simple_repeat 1 357 0 4 915 234 279 154 21 chr1 43259269 43259412 -153936020 + LTR48 LTR ERV1 1 162 -625 4 915 1773 139 189 0 chr1 43260652 43260975 -153934457 + ORR1C2 LTR MaLR 1 384 0 4 915 420 20 0 0 chr1 43261856 43261905 -153933527 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 915 342 0 0 0 chr1 43261905 43261943 -153933489 + (CCA)n Simple_repeat Simple_repeat 1 38 0 4 915 180 0 0 0 chr1 43261943 43261963 -153933469 + (CAG)n Simple_repeat Simple_repeat 1 20 0 4 915 2171 291 72 16 chr1 43262161 43262892 -153932540 - Lx8 LINE L1 -1 7472 6701 4 915 219 133 0 0 chr1 43262907 43262952 -153932480 + (T)n Simple_repeat Simple_repeat 1 45 0 4 915 296 243 14 0 chr1 43263141 43263215 -153932217 + GA-rich Low_complexity Low_complexity 3 77 0 4 915 388 172 11 11 chr1 43263227 43263315 -153932117 + GA-rich Low_complexity Low_complexity 6 93 0 4 915 381 318 47 57 chr1 43263716 43264037 -153931395 + MLT1A1 LTR MaLR 28 348 -17 4 915 547 253 36 64 chr1 43264274 43264434 -153930998 - L1MB3 LINE L1 -1 6182 6030 4 915 2981 20 9 6 chr1 43264434 43264779 -153930653 - ORR1A0 LTR MaLR 0 346 1 4 915 547 253 36 64 chr1 43264779 43264867 -153930565 - L1MB3 LINE L1 -154 6029 5941 4 915 270 81 0 0 chr1 43264942 43264979 -153930453 + (AGGGGG)n Simple_repeat Simple_repeat 5 41 0 4 915 1250 232 47 30 chr1 43264982 43265320 -153930112 + RLTR20B3 LTR ERVK 188 531 -46 4 915 213 119 0 0 chr1 43265374 43265416 -153930016 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 915 197 159 0 22 chr1 43266052 43266097 -153929335 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 4 915 268 78 0 56 chr1 43266127 43266181 -153929251 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 4 915 268 306 128 8 chr1 43266457 43266582 -153928850 + MER2 DNA MER2_type 11 150 -195 4 915 1134 283 18 29 chr1 43266582 43267070 -153928362 + L1MA5 LINE L1 5469 5909 -1564 4 915 429 20 0 0 chr1 43267072 43267122 -153928310 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 915 958 201 42 0 chr1 43267460 43267649 -153927783 - B3 SINE B2 -9 207 11 4 915 380 203 81 0 chr1 43267917 43267991 -153927441 + ID4 SINE ID 2 81 -2 4 915 1102 261 60 25 chr1 43270616 43270982 -153924450 - MTE2a LTR MaLR 0 379 1 4 915 473 331 82 13 chr1 43271136 43271525 -153923907 + L1M2 LINE L1 2165 2580 -4269 4 915 477 181 117 78 chr1 43271703 43271883 -153923549 - Lx7 LINE L1 -203 7493 7307 4 915 446 332 51 79 chr1 43272275 43272667 -153922765 - MER121 Unknown Unknown -11 401 21 4 915 422 318 113 19 chr1 43273338 43273619 -153921813 - MLT1A0 LTR MaLR -76 332 7 4 915 33 0 0 0 chr1 43273670 43273703 -153921729 + AT_rich Low_complexity Low_complexity 1 33 0 4 915 285 305 123 70 chr1 43274119 43274362 -153921070 + B4 SINE B4 36 291 -1 4 915 396 0 0 0 chr1 43274370 43274414 -153921018 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 915 333 0 0 0 chr1 43274416 43274453 -153920979 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 915 252 226 0 0 chr1 43274518 43274580 -153920852 + CT-rich Low_complexity Low_complexity 3 64 0 4 915 249 268 14 0 chr1 43276307 43276378 -153919054 - L1ME4a LINE L1 -78 6046 5975 4 915 329 47 0 0 chr1 43276660 43276703 -153918729 - HAL1-3A_ME LINE L1 -840 2018 1976 4 915 655 188 21 4 chr1 43276742 43276984 -153918448 + (TG)n Simple_repeat Simple_repeat 1 246 0 4 915 715 269 69 20 chr1 43276984 43277231 -153918201 + MTE2b LTR MaLR 83 341 -38 4 915 449 189 29 7 chr1 43277519 43277658 -153917774 + CT-rich Low_complexity Low_complexity 3 144 0 4 915 253 244 124 50 chr1 43279236 43279357 -153916075 + MLT1A1 LTR MaLR 1 130 -278 4 915 528 289 108 25 chr1 43279606 43279883 -153915549 - L1_Mur3 LINE L1 -377 5503 5204 4 915 1249 234 118 54 chr1 43279888 43280342 -153915090 - RMER19A LTR ERVK 0 611 184 4 915 723 54 0 0 chr1 43280342 43280434 -153914998 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 915 1249 228 145 16 chr1 43280434 43280525 -153914907 - RMER19A LTR ERVK -554 183 96 4 915 1063 283 97 16 chr1 43280564 43281006 -153914426 - L1M2 LINE L1 -915 5228 4751 4 915 226 314 0 14 chr1 43281041 43281112 -153914320 + Tigger7 DNA MER2_type 2421 2490 -1 4 915 299 276 73 8 chr1 43282235 43282359 -153913073 - L1MB3 LINE L1 -16 6167 6036 4 915 645 276 70 7 chr1 43282380 43282650 -153912782 - L1MB3 LINE L1 -433 5747 5461 4 915 340 343 0 29 chr1 43282854 43282992 -153912440 + ID_B1 SINE B4 82 215 -9 4 915 38618 14 1 8 chr1 43283029 43288297 -153907135 + L1Md_A LINE L1 359 5586 -297 4 915 8931 17 0 0 chr1 43288297 43289293 -153906139 + L1Md_A LINE L1 5587 6582 0 4 915 579 15 0 0 chr1 43289357 43289425 -153906007 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 915 489 17 0 0 chr1 43289425 43289482 -153905950 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 915 736 203 15 22 chr1 43289853 43289989 -153905443 - B1_Mur1 SINE Alu -14 135 1 4 915 22 56 0 0 chr1 43290492 43290528 -153904904 + AT_rich Low_complexity Low_complexity 1 36 0 4 915 2976 35 0 3 chr1 43290619 43290964 -153904468 + ORR1A1 LTR MaLR 3 346 0 4 915 526 320 82 11 chr1 43290972 43291241 -153904191 + L1M2 LINE L1 5507 5794 -497 4 915 326 45 0 0 chr1 43291374 43291418 -153904014 + L1_Mus2 LINE L1 6521 6564 -2 4 915 732 156 0 0 chr1 43291442 43291570 -153903862 + GA-rich Low_complexity Low_complexity 2 129 0 4 915 241 327 0 0 chr1 43291951 43292006 -153903426 + ID_B1 SINE B4 108 162 -62 4 915 195 69 0 0 chr1 43293342 43293371 -153902061 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 915 462 165 8 16 chr1 43293451 43293580 -153901852 + (TG)n Simple_repeat Simple_repeat 2 129 0 4 915 534 169 24 12 chr1 43293619 43293787 -153901645 + (TG)n Simple_repeat Simple_repeat 1 170 0 4 915 582 268 0 94 chr1 43293825 43294006 -153901426 - RSINE1 SINE B4 0 165 2 4 915 732 54 0 0 chr1 43295059 43295152 -153900280 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 915 39 68 0 0 chr1 43296241 43296315 -153899117 + AT_rich Low_complexity Low_complexity 1 74 0 4 915 561 315 0 0 chr1 43297553 43297699 -153897733 + MER2 DNA MER2_type 189 334 -11 4 915 21 0 0 0 chr1 43298115 43298136 -153897296 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 501 172 55 47 chr1 43299208 43299336 -153896096 - RMER10A LTR ERVL 0 442 314 4 915 5315 143 5 8 chr1 43299336 43299548 -153895884 + Lx5 LINE L1 5038 5249 -628 4 915 5030 64 8 6 chr1 43299548 43300190 -153895242 + L1Md_F2 LINE L1 5940 6582 0 4 915 5355 182 99 19 chr1 43300190 43301834 -153893598 + Lx5 LINE L1 5250 7039 -19 4 915 213 39 0 0 chr1 43301834 43301860 -153893572 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4 915 302 339 55 0 chr1 43303161 43303270 -153892162 + B1F SINE Alu 14 128 -21 4 915 238 305 0 0 chr1 43303324 43303383 -153892049 - ID4 SINE ID 0 83 25 4 915 199 239 43 43 chr1 43303563 43303633 -153891799 - MIRb SINE MIR -17 251 182 4 915 542 276 0 0 chr1 43303724 43303847 -153891585 - RSINE1 SINE B4 -40 125 3 4 915 249 268 82 10 chr1 43303871 43303969 -153891463 - MIRb SINE MIR -133 135 31 4 915 974 248 78 30 chr1 43304068 43304338 -153891094 + ORR1D2 LTR MaLR 82 364 -6 4 915 1690 160 88 26 chr1 43306383 43306735 -153888697 - ORR1D1 LTR MaLR 0 374 1 4 915 503 231 47 89 chr1 43308718 43308908 -153886524 + B3A SINE B2 1 182 -16 4 915 521 288 81 38 chr1 43310097 43310412 -153885020 - L1MA7 LINE L1 0 6300 5989 4 915 240 311 27 0 chr1 43310414 43310488 -153884944 + CT-rich Low_complexity Low_complexity 2 77 0 4 915 946 243 19 14 chr1 43310906 43311119 -153884313 - B3 SINE B2 0 216 3 4 915 464 32 16 0 chr1 43311472 43311534 -153883898 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 915 699 294 75 16 chr1 43311566 43311818 -153883614 - B4A SINE B4 -18 274 8 4 915 343 269 65 36 chr1 43313931 43314070 -153881362 - MER47B DNA MER2_type -133 285 143 4 915 423 250 57 24 chr1 43314113 43314236 -153881196 + B1F1 SINE Alu 2 128 -21 4 915 240 306 16 0 chr1 43314246 43314308 -153881124 - MER47B DNA MER2_type -355 63 1 4 915 348 233 69 11 chr1 43314422 43314509 -153880923 + PB1D10 SINE Alu 21 112 -5 4 915 396 0 0 0 chr1 43316479 43316523 -153878909 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 915 332 267 0 0 chr1 43317880 43317955 -153877477 + PB1 SINE Alu 17 91 -36 4 915 183 247 0 0 chr1 43317976 43318049 -153877383 + A-rich Low_complexity Low_complexity 1 73 0 4 915 494 242 157 8 chr1 43318076 43318197 -153877235 + RSINE1 SINE B4 4 142 -23 4 915 1121 167 57 9 chr1 43318349 43318561 -153876871 - ORR1D1 LTR MaLR -152 222 1 4 915 267 31 0 0 chr1 43318595 43318627 -153876805 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 915 315 0 0 0 chr1 43318628 43318663 -153876769 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 915 1094 312 136 80 chr1 43318674 43320390 -153875042 + L1_Mur3 LINE L1 4018 5828 -52 4 915 234 170 18 36 chr1 43320444 43320499 -153874933 + (CAGAGA)n Simple_repeat Simple_repeat 3 56 0 4 915 329 319 43 0 chr1 43320706 43320822 -153874610 + Lx8 LINE L1 7173 7293 -180 4 915 471 244 122 0 chr1 43322352 43322483 -153872949 - B1_Mur2 SINE Alu -1 148 2 4 915 252 291 0 0 chr1 43323284 43323339 -153872093 + tRNA-Ala-GCY_ tRNA tRNA 2 56 -19 5 915 315 0 0 0 chr1 43323939 43323974 -153871458 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 915 240 219 33 66 chr1 43323996 43324056 -153871376 - Lx7 LINE L1 -19 7677 7618 5 915 2260 11 114 0 chr1 43324056 43324318 -153871114 + RLTR10B LTR ERVK 1 292 0 5 915 240 219 33 66 chr1 43324318 43324379 -153871053 - Lx7 LINE L1 -79 7617 7560 5 915 1640 238 52 49 chr1 43324456 43324881 -153870551 - Lx7 LINE L1 -405 7291 6866 5 915 244 57 0 0 chr1 43324913 43324948 -153870484 + B3A SINE B2 1 35 -163 5 915 766 155 20 34 chr1 43325221 43325368 -153870064 - B1_Mur4 SINE Alu -3 147 3 5 915 4192 46 5 1 chr1 43326814 43327482 -153867950 - L1Md_F3 LINE L1 -490 6094 5425 5 915 343 111 0 18 chr1 43327482 43327537 -153867895 + L1Md_F2 LINE L1 5914 5967 -615 5 915 4234 217 23 84 chr1 43327987 43329307 -153866125 + L1_Rod LINE L1 2320 3558 -2289 5 915 2337 49 7 7 chr1 43329334 43329644 -153865788 - MusHAL1 LINE L1 -1 2711 2402 5 915 384 290 72 64 chr1 43329886 43330009 -153865423 - RLTR12B LTR ERVK -244 284 155 5 915 1196 173 567 8 chr1 43330009 43330482 -153864950 - RMER19A LTR ERVK 0 737 1 5 915 384 290 72 64 chr1 43330482 43330594 -153864838 - RLTR12B LTR ERVK -374 154 47 5 915 3265 234 84 79 chr1 43330627 43331001 -153864431 + L1_Rod LINE L1 3619 3946 -1901 5 915 2032 145 66 18 chr1 43331001 43331381 -153864051 - RMER10B LTR ERVL 0 398 1 5 915 3265 234 84 79 chr1 43331381 43332203 -153863229 + L1_Rod LINE L1 3947 4821 -1026 5 915 268 209 0 43 chr1 43332209 43332279 -153863153 + L1_Rod LINE L1 5264 5330 -517 5 915 3859 213 131 40 chr1 43332274 43333353 -153862079 + Lx9 LINE L1 6289 7465 -179 5 915 405 0 0 0 chr1 43333355 43333400 -153862032 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 915 367 184 44 33 chr1 43333407 43333497 -153861935 + MTD LTR MaLR 208 298 -121 5 915 1351 147 169 67 chr1 43333564 43333852 -153861580 + ORR1C2 LTR MaLR 1 339 -45 5 915 1159 117 11 38 chr1 43333852 43334038 -153861394 + B2_Mm2 SINE B2 1 181 -14 5 915 1351 147 169 67 chr1 43334038 43334092 -153861340 + ORR1C2 LTR MaLR 340 378 -6 5 915 772 318 75 27 chr1 43334195 43334606 -153860826 + L1M4 LINE L1 3980 4410 -1736 5 915 274 305 32 0 chr1 43334609 43334704 -153860728 + MLT1A LTR MaLR 226 323 -51 5 915 440 40 0 51 chr1 43334708 43334787 -153860645 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 915 264 30 0 0 chr1 43334822 43334855 -153860577 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 915 279 263 105 0 chr1 43335185 43335280 -153860152 + L1MC LINE L1 4511 4615 -1531 5 915 798 256 40 25 chr1 43335686 43335886 -153859546 + B3 SINE B2 2 204 -12 5 915 219 36 0 0 chr1 43335922 43335950 -153859482 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 915 243 0 0 0 chr1 43335952 43335979 -153859453 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 915 344 299 43 25 chr1 43335979 43336140 -153859292 + L1MD3 LINE L1 7088 7251 -744 5 915 21 0 0 0 chr1 43336140 43336161 -153859271 + AT_rich Low_complexity Low_complexity 1 21 0 5 915 953 313 126 7 chr1 43336473 43336911 -153858521 - MER45B DNA Tip100 -18 1022 533 5 915 586 230 45 26 chr1 43337071 43337227 -153858205 - B3 SINE B2 -28 188 30 5 915 292 357 25 25 chr1 43337221 43337382 -153858050 - MER45B DNA Tip100 -777 263 103 5 915 907 196 103 0 chr1 43337458 43337652 -153857780 + B3 SINE B2 3 216 0 5 915 937 135 7 45 chr1 43338529 43338684 -153856748 + B1_Mur4 SINE Alu 2 150 0 5 915 243 254 14 27 chr1 43338778 43338851 -153856581 + RLTR25A LTR ERVK 501 572 -531 5 915 611 186 9 0 chr1 43338786 43338899 -153856533 + B1_Mus2 SINE Alu 34 147 0 5 915 637 185 0 0 chr1 43338930 43339038 -153856394 + Lx7 LINE L1 6340 6447 -1249 5 915 1227 113 11 26 chr1 43339133 43339324 -153856108 + B2_Mm2 SINE B2 1 188 -7 5 915 471 256 70 25 chr1 43339337 43339522 -153855910 + Lx7 LINE L1 7482 7650 -46 5 915 208 53 0 50 chr1 43339522 43339562 -153855870 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 915 422 294 0 96 chr1 43339562 43339598 -153855834 + Lx7 LINE L1 7413 7448 -12 5 915 365 291 43 39 chr1 43341037 43341294 -153854138 + RLTR15 LTR ERVK 46 303 -56 5 915 2871 73 63 2 chr1 43341323 43341720 -153853712 - BGLII LTR ERVK 0 421 1 5 915 192 40 0 0 chr1 43343159 43343184 -153852248 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 5 915 946 129 58 17 chr1 43343220 43343393 -153852039 + ORR1C1 LTR MaLR 1 180 -198 5 915 633 128 0 0 chr1 43343393 43343495 -153851937 + (TC)n Simple_repeat Simple_repeat 2 103 0 5 915 291 283 4 0 chr1 43343516 43343597 -153851835 + ORR1C1 LTR MaLR 166 248 -126 5 915 4514 50 3 39 chr1 43343597 43344237 -153851195 + RLTR13B2 LTR ERVK 1 617 -205 5 915 2286 186 43 37 chr1 43344448 43345214 -153850218 + RMER6A LTR ERVK 1 756 0 5 915 302 275 138 38 chr1 43345314 43345473 -153849959 + LTR65 LTR ERV1 375 549 -120 5 915 600 238 7 26 chr1 43345699 43345850 -153849582 + B1_Mur2 SINE Alu 1 148 -1 5 915 1438 202 184 0 chr1 43346418 43346734 -153848698 - ORR1D1 LTR MaLR 0 374 1 5 915 504 45 0 0 chr1 43347011 43347078 -153848354 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 915 267 93 0 0 chr1 43348386 43348429 -153847003 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 5 915 400 202 7 157 chr1 43348533 43348707 -153846725 - MTEa LTR MaLR -2 377 215 5 915 274 216 22 22 chr1 43348735 43348863 -153846569 + GA-rich Low_complexity Low_complexity 1 128 0 5 915 235 222 0 18 chr1 43349248 43349303 -153846129 + MIRc SINE MIR 83 136 -132 5 915 270 261 104 42 chr1 43350438 43350534 -153844898 - PB1D7 SINE Alu -11 109 8 5 915 384 264 48 32 chr1 43351329 43351454 -153843978 + MER3 DNA MER1_type 64 190 -19 5 915 1244 35 0 0 chr1 43351964 43352109 -153843323 + B1_Mm SINE Alu 3 147 0 5 915 852 128 7 7 chr1 43352957 43353106 -153842326 - L1_Mus4 LINE L1 -12 6624 6476 5 915 901 273 97 15 chr1 43354120 43354521 -153840911 - L1MB2 LINE L1 -12 6159 5726 5 915 238 188 21 0 chr1 43355519 43355567 -153839865 + ZP3AR Satellite Satellite 37 85 -127 5 915 561 277 74 69 chr1 43355525 43355727 -153839705 + ID_B1 SINE B4 2 204 -20 5 915 2821 73 44 8 chr1 43355980 43356366 -153839066 - MTB LTR MaLR 0 400 1 5 915 282 29 0 0 chr1 43358646 43358681 -153836751 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 915 241 247 42 31 chr1 43359234 43359330 -153836102 + MLT1A1 LTR MaLR 310 406 -2 5 915 202 358 88 15 chr1 43359571 43359707 -153835725 - MER5A DNA MER1_type -35 154 9 5 915 240 330 26 9 chr1 43360108 43360221 -153835211 - LTR40a LTR ERVL -354 165 51 5 915 465 321 101 103 chr1 43360326 43360366 -153835066 - MLT1C LTR MaLR -12 455 403 5 915 270 0 0 0 chr1 43360366 43360396 -153835036 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 915 465 321 101 103 chr1 43360396 43360793 -153834639 - MLT1C LTR MaLR -65 402 19 5 915 648 312 77 54 chr1 43360840 43360913 -153834519 + MLT1D LTR MaLR 113 192 -313 5 915 1069 66 7 0 chr1 43360913 43361049 -153834383 + B1_Mus1 SINE Alu 1 137 -11 5 915 648 312 77 54 chr1 43361049 43361315 -153834117 + MLT1D LTR MaLR 193 460 -45 5 915 613 299 35 41 chr1 43361315 43361693 -153833739 - ORR1E LTR MaLR 0 370 3 5 915 624 14 0 0 chr1 43361997 43362070 -153833362 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 915 228 35 0 0 chr1 43362070 43362098 -153833334 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 915 518 233 93 0 chr1 43362099 43362228 -153833204 - B3A SINE B2 -56 142 2 5 915 335 246 107 0 chr1 43362648 43362770 -153832662 - Tigger1 DNA MER2_type -2279 139 5 5 915 611 95 9 0 chr1 43363100 43363205 -153832227 + (TC)n Simple_repeat Simple_repeat 2 107 0 5 915 351 0 0 0 chr1 43363205 43363244 -153832188 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 915 350 274 25 25 chr1 43364353 43364510 -153830922 - MER96B DNA hAT -194 223 67 5 915 918 199 6 22 chr1 43365334 43365514 -153829918 + B3 SINE B2 2 178 -38 5 915 2740 200 75 14 chr1 43365901 43365928 -153829504 - Lx5 LINE L1 0 7050 7010 5 915 342 0 0 0 chr1 43365928 43365966 -153829466 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 915 315 0 0 0 chr1 43365966 43366000 -153829432 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 915 2740 200 75 14 chr1 43366000 43366535 -153828897 - Lx5 LINE L1 -41 7009 6454 5 915 283 261 136 0 chr1 43366704 43366792 -153828640 + HAL1 LINE L1 1567 1666 -841 5 915 1086 159 53 5 chr1 43366806 43367015 -153828417 - ORR1C1 LTR MaLR 0 378 160 5 915 289 243 28 46 chr1 43367437 43367545 -153827887 + HAL1 LINE L1 2402 2507 0 5 915 189 175 0 0 chr1 43368482 43368522 -153826910 + (TTG)n Simple_repeat Simple_repeat 2 41 0 5 915 426 301 95 14 chr1 43369119 43369225 -153826207 - B4A SINE B4 -55 237 119 5 915 414 0 0 0 chr1 43369225 43369271 -153826161 + (CCA)n Simple_repeat Simple_repeat 3 48 0 5 915 426 301 95 14 chr1 43369271 43369312 -153826120 - B4A SINE B4 -174 118 78 5 915 886 221 6 0 chr1 43369871 43370052 -153825380 + B3 SINE B2 25 206 -10 5 915 483 18 0 0 chr1 43370299 43370355 -153825077 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 915 291 295 113 16 chr1 43370605 43370729 -153824703 + MLT1A LTR MaLR 239 374 0 5 915 602 60 12 0 chr1 43372014 43372097 -153823335 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 5 915 341 314 145 38 chr1 43372390 43372549 -153822883 - B3A SINE B2 -16 182 7 5 915 4215 33 2 89 chr1 43373076 43373637 -153821795 + RLTR1B LTR ERV1 1 512 0 5 915 256 263 0 0 chr1 43373716 43373773 -153821659 + ID4 SINE ID 3 59 -24 5 915 719 137 8 0 chr1 43374648 43374772 -153820660 + (TCCCC)n Simple_repeat Simple_repeat 3 127 0 5 915 1135 158 11 0 chr1 43375283 43375473 -153819959 - URR1A DNA MER1_type -34 192 1 5 915 1173 242 101 39 chr1 43375762 43376149 -153819283 + MTD LTR MaLR 9 419 0 5 915 21 0 0 0 chr1 43376199 43376220 -153819212 + AT_rich Low_complexity Low_complexity 1 21 0 5 915 202 83 38 89 chr1 43376228 43376307 -153819125 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 915 902 50 0 0 chr1 43376722 43376841 -153818591 + B1_Mus1 SINE Alu 29 147 -1 5 915 1325 248 82 35 chr1 43376933 43377338 -153818094 - Lx8 LINE L1 -144 7329 6906 5 915 403 315 20 47 chr1 43378572 43378722 -153816710 + RSINE1 SINE B4 3 148 -17 5 915 7774 62 1 36 chr1 43379045 43380244 -153815188 - L1_Mus2 LINE L1 0 6566 5403 6 915 263 368 0 0 chr1 43381805 43381881 -153813551 + ID4_ SINE ID 2 77 -6 6 915 626 316 52 19 chr1 43381886 43382157 -153813275 - L1MA6 LINE L1 -155 6145 5866 6 915 246 286 11 42 chr1 43382360 43382455 -153812977 + B4A SINE B4 76 167 -125 6 915 392 195 0 13 chr1 43382381 43382459 -153812973 + B1_Mur4 SINE Alu 11 87 -63 6 915 327 78 0 0 chr1 43382562 43382613 -153812819 + (TAGG)n Simple_repeat Simple_repeat 4 54 0 6 915 246 306 24 0 chr1 43383686 43383771 -153811661 + MER63D DNA AcHobo 2 88 -973 6 915 1288 244 38 36 chr1 43383780 43384201 -153811231 + L1MC1 LINE L1 5628 6049 -284 6 916 317 306 33 40 chr1 43385293 43385443 -153809989 - ORR1E LTR MaLR -210 149 1 6 916 665 247 100 30 chr1 43386515 43386745 -153808687 - MTD LTR MaLR 0 419 174 6 916 1275 268 90 34 chr1 43386790 43387469 -153807963 + L1M2 LINE L1 2896 3612 -2531 6 916 767 278 90 0 chr1 43387479 43387713 -153807719 + MTE2b LTR MaLR 10 264 -115 6 916 452 190 17 17 chr1 43387784 43387902 -153807530 + L1M2 LINE L1 3624 3741 -2402 6 916 1093 288 42 14 chr1 43387873 43388306 -153807126 + L1M2 LINE L1 3859 4303 -1837 6 916 342 0 0 0 chr1 43388306 43388344 -153807088 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 916 2467 164 61 14 chr1 43388346 43388790 -153806642 + RMER4A LTR ERVK 2 466 0 6 916 3148 177 84 20 chr1 43388822 43388969 -153806463 + MurERV4-int LTR ERVK 38 184 -5076 6 916 351 0 0 0 chr1 43388969 43389008 -153806424 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 6 916 3148 177 84 20 chr1 43389008 43389470 -153805962 + MurERV4-int LTR ERVK 185 685 -4575 6 916 1630 189 20 84 chr1 43390240 43390644 -153804788 + RLTR1B LTR ERV1 135 512 0 6 916 233 281 16 0 chr1 43390647 43390711 -153804721 - MER2B DNA MER2_type -259 77 13 6 916 190 0 67 0 chr1 43390947 43390977 -153804455 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 6 916 360 191 96 0 chr1 43391286 43391380 -153804052 + MER58D DNA MER1_type 276 378 -8 6 916 444 191 0 0 chr1 43391578 43391667 -153803765 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 916 6618 75 63 0 chr1 43392113 43393032 -153802400 + Lx3_Mus LINE L1 6033 7009 0 6 916 1225 48 0 23 chr1 43395712 43395883 -153799549 + (TCTCCC)n Simple_repeat Simple_repeat 6 172 0 6 916 33 25 0 0 chr1 43396077 43396117 -153799315 + AT_rich Low_complexity Low_complexity 1 40 0 6 916 267 56 56 0 chr1 43396528 43396582 -153798850 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 6 916 496 286 61 73 chr1 43396597 43396867 -153798565 - B4A SINE B4 -6 286 3 6 916 564 237 0 36 chr1 43397379 43397519 -153797913 - MTC LTR MaLR 0 421 287 6 916 1181 225 11 14 chr1 43397656 43397935 -153797497 + MT2A LTR ERVL 185 462 -71 6 916 410 273 55 91 chr1 43399475 43399640 -153795792 - MLT1D LTR MaLR -107 398 240 6 916 242 143 40 20 chr1 43399661 43399711 -153795721 + ORR1C1 LTR MaLR 254 304 -74 6 916 1524 198 72 11 chr1 43400199 43400561 -153794871 - ORR1C2 LTR MaLR 0 384 1 6 916 624 67 114 0 chr1 43400753 43400858 -153794574 - L1Md_F3 LINE L1 0 6584 6468 6 916 732 205 46 13 chr1 43401227 43401380 -153794052 + RSINE1 SINE B4 2 159 -6 6 916 534 270 228 39 chr1 43402322 43402681 -153792751 - MLT1D LTR MaLR -2 503 77 6 916 818 226 74 42 chr1 43402685 43402896 -153792536 + RLTR15 LTR ERVK 1 210 -149 6 916 225 0 0 0 chr1 43402896 43402921 -153792511 + (AATAG)n Simple_repeat Simple_repeat 4 28 0 6 916 818 226 74 42 chr1 43402921 43403019 -153792413 + RLTR15 LTR ERVK 211 319 -40 6 916 1326 147 24 24 chr1 43403136 43403387 -153792045 + RMER15 LTR ERVL 1 251 -324 6 916 1146 290 40 16 chr1 43403417 43403795 -153791637 - MER82 DNA MER2_type -263 390 4 6 916 275 267 33 11 chr1 43405313 43405404 -153790028 + L1M5 LINE L1 5622 5714 -526 6 916 1192 48 14 0 chr1 43405565 43405710 -153789722 + B1_Mm SINE Alu 1 147 0 6 916 285 333 10 0 chr1 43405792 43405894 -153789538 - PB1D10 SINE Alu -5 112 10 6 916 593 236 8 16 chr1 43405925 43406054 -153789378 + RSINE1 SINE B4 2 129 -36 6 916 226 376 119 17 chr1 43406313 43406489 -153788943 - B4A SINE B4 -4 288 95 6 916 716 231 41 71 chr1 43408578 43408774 -153786658 + B3A SINE B2 8 197 -1 6 916 1317 29 40 0 chr1 43409250 43409423 -153786009 - B2_Mm2 SINE B2 -4 191 12 6 916 263 72 0 23 chr1 43409437 43409480 -153785952 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 6 916 666 0 0 0 chr1 43409926 43410000 -153785432 + (CAG)n Simple_repeat Simple_repeat 1 74 0 6 916 579 313 15 0 chr1 43410222 43410420 -153785012 - MER2 DNA MER2_type -46 299 99 6 916 182 62 31 0 chr1 43411566 43411598 -153783834 + (TATG)n Simple_repeat Simple_repeat 4 36 0 6 916 1097 208 9 0 chr1 43411610 43411822 -153783610 - B3 SINE B2 -1 215 2 6 916 350 250 0 11 chr1 43412431 43412524 -153782908 + L1M5 LINE L1 5577 5668 -456 6 916 225 233 0 0 chr1 43412646 43412689 -153782743 + ID4_ SINE ID 2 44 -39 6 916 755 267 23 6 chr1 43412703 43412880 -153782552 - B3 SINE B2 -34 182 3 6 916 180 152 0 0 chr1 43412938 43412971 -153782461 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 916 720 264 90 71 chr1 43413060 43413142 -153782290 + MER2 DNA MER2_type 3 70 -275 6 916 236 200 43 58 chr1 43413142 43413211 -153782221 - ID4 SINE ID -14 69 2 6 916 720 264 90 71 chr1 43413211 43413450 -153781982 + MER2 DNA MER2_type 71 330 -15 6 916 251 122 20 0 chr1 43413821 43413870 -153781562 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 916 1381 76 32 0 chr1 43414618 43414803 -153780629 - B2_Mm1a SINE B2 -1 192 2 6 916 22 0 0 0 chr1 43414971 43414993 -153780439 + AT_rich Low_complexity Low_complexity 1 22 0 6 916 227 362 7 41 chr1 43415039 43415186 -153780246 + L3 LINE CR1 3812 3953 -536 6 916 363 340 78 16 chr1 43415286 43415477 -153779955 - MER2 DNA MER2_type -22 323 121 6 916 762 252 123 39 chr1 43415952 43416261 -153779171 + MER44A DNA MER2_type 5 339 0 6 916 29 28 0 0 chr1 43417514 43417550 -153777882 + AT_rich Low_complexity Low_complexity 1 36 0 6 916 243 0 0 0 chr1 43418588 43418615 -153776817 + (CCCTG)n Simple_repeat Simple_repeat 4 30 0 6 916 270 136 0 0 chr1 43419061 43419105 -153776327 + (T)n Simple_repeat Simple_repeat 1 44 0 6 916 1031 130 0 11 chr1 43419378 43419557 -153775875 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 6 916 357 251 87 82 chr1 43420914 43421122 -153774310 - ORR1E LTR MaLR -9 350 142 6 916 396 0 0 0 chr1 43422027 43422071 -153773361 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 916 2873 141 45 29 chr1 43422495 43423012 -153772420 + RLTR11A LTR ERVK 1 525 -3 6 916 1504 128 53 0 chr1 43423148 43423429 -153772003 - ORR1B1 LTR MaLR -96 298 3 6 916 396 40 0 0 chr1 43423617 43423667 -153771765 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 916 1104 275 84 54 chr1 43423735 43424270 -153771162 + L1MC1 LINE L1 5779 6329 -4 6 916 335 244 0 24 chr1 43424863 43424947 -153770485 + B3A SINE B2 8 89 -109 6 916 937 69 122 0 chr1 43425822 43425953 -153769479 + B1_Mm SINE Alu 1 147 0 6 916 8496 35 0 4 chr1 43426052 43427355 -153768077 - L1Md_F2 LINE L1 -1 6581 5286 6 916 439 253 0 0 chr1 43427762 43427857 -153767575 + B3A SINE B2 2 96 -102 6 916 303 28 0 0 chr1 43427932 43427968 -153767464 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 916 495 0 0 0 chr1 43428578 43428633 -153766799 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 916 321 312 156 11 chr1 43429076 43429699 -153765733 - L1M5 LINE L1 -1263 4883 4151 6 916 233 256 120 58 chr1 43430057 43430298 -153765134 - L1MEf LINE L1 -3078 3068 2813 6 916 1892 195 65 3 chr1 43430568 43430953 -153764479 - MTD LTR MaLR -8 411 3 6 916 2051 197 37 10 chr1 43431209 43431619 -153763813 + MTC LTR MaLR 1 421 0 6 916 502 343 113 62 chr1 43431916 43432346 -153763086 - L1MEf LINE L1 -4477 1765 1299 6 916 312 48 0 0 chr1 43432346 43432388 -153763044 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 6 916 502 306 188 63 chr1 43432388 43433057 -153762375 - L1MEf LINE L1 -4944 1298 561 6 916 4006 55 0 2 chr1 43433070 43433558 -153761874 - L1Md_F2 LINE L1 -15 6567 6081 6 916 558 99 0 0 chr1 43433839 43433930 -153761502 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 916 1014 209 282 0 chr1 43434063 43434350 -153761082 + ORR1D2 LTR MaLR 3 370 0 6 916 567 43 0 0 chr1 43434679 43434749 -153760683 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 6 916 1987 209 72 145 chr1 43435227 43436199 -153759233 + RMER13B LTR ERVK 4 904 -4 6 916 821 270 112 44 chr1 43437125 43437446 -153757986 + MER2 DNA MER2_type 2 344 -1 6 916 22 0 0 0 chr1 43437501 43437523 -153757909 + AT_rich Low_complexity Low_complexity 1 22 0 6 916 1386 89 16 21 chr1 43437536 43437730 -153757702 + B2_Mm2 SINE B2 1 193 -2 6 916 10966 47 0 1 chr1 43439283 43441306 -153754126 - L1Md_F2 LINE L1 -12 6570 4550 6 916 317 306 80 42 chr1 43441318 43441530 -153753902 - FordPrefect DNA Tip100 -425 1258 1039 6 916 322 248 69 0 chr1 43442439 43442522 -153752910 - MER47A DNA MER2_type -177 189 100 6 916 1192 51 0 0 chr1 43442522 43442680 -153752752 + B2_Mm2 SINE B2 1 158 -37 6 916 406 151 8 124 chr1 43443159 43443288 -153752144 - Lx5 LINE L1 0 7058 6933 6 916 1004 266 118 14 chr1 43443385 43443732 -153751700 + MLT1A1 LTR MaLR 19 401 -7 6 916 309 325 39 16 chr1 43444143 43444271 -153751161 - MER46C DNA MER2_type -1 337 207 6 916 229 207 57 5 chr1 43444424 43444507 -153750925 - MIR SINE MIR -44 164 84 6 916 419 302 111 36 chr1 43444579 43444940 -153750492 + ORSL-2b DNA Tip100 114 501 -7 6 916 428 270 79 54 chr1 43445059 43445337 -153750095 + L1MA9 LINE L1 5945 6229 -83 7 916 546 16 0 0 chr1 43446329 43446392 -153749040 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 916 1785 138 22 82 chr1 43446947 43447311 -153748121 - ORR1B1 LTR MaLR -13 381 40 7 916 35 24 0 0 chr1 43447311 43447353 -153748079 + AT_rich Low_complexity Low_complexity 1 42 0 7 916 439 223 19 0 chr1 43447367 43447470 -153747962 - ORR1D1 LTR MaLR -117 257 153 7 916 6474 32 8 42 chr1 43447494 43448318 -153747114 - L1_Mus2 LINE L1 0 6566 5771 7 916 3496 89 60 10 chr1 43448319 43448820 -153746612 + L1_Mus2 LINE L1 5243 5768 -115 7 916 826 174 0 7 chr1 43448820 43448970 -153746462 - ORR1D1 LTR MaLR -225 149 1 7 916 221 281 10 30 chr1 43448994 43449093 -153746339 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 916 362 124 45 0 chr1 43449104 43449193 -153746239 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 916 294 276 55 99 chr1 43449910 43450111 -153745321 + Tigger7 DNA MER2_type 2290 2481 -10 7 916 4286 104 20 7 chr1 43450966 43451576 -153743856 + Lx4A LINE L1 6440 7057 -1 7 916 624 126 65 40 chr1 43451656 43451780 -153743652 - RMER1B Other Other -19 1047 921 7 916 948 281 37 27 chr1 43454555 43454855 -153740577 - MTEa LTR MaLR 0 379 77 7 916 273 264 76 138 chr1 43454939 43455027 -153740405 - MLT1C LTR MaLR -256 211 131 7 916 718 230 0 13 chr1 43455027 43455177 -153740255 + B1_Mur1 SINE Alu 2 149 0 7 916 273 264 76 138 chr1 43455177 43455312 -153740120 - MLT1C LTR MaLR -337 130 3 7 916 285 336 49 21 chr1 43455343 43455486 -153739946 - L3 LINE CR1 -71 4418 4272 7 916 1657 239 29 78 chr1 43456259 43456380 -153739052 + Lx9 LINE L1 6620 6742 -902 7 916 1159 61 0 7 chr1 43456380 43456528 -153738904 + B1_Mus1 SINE Alu 2 148 0 7 916 1657 239 29 78 chr1 43456528 43456956 -153738476 + Lx9 LINE L1 6743 7142 -502 7 916 672 221 0 24 chr1 43456954 43457121 -153738311 + Lx9 LINE L1 7300 7462 -182 7 916 198 103 0 0 chr1 43457121 43457150 -153738282 + (CATG)n Simple_repeat Simple_repeat 2 30 0 7 916 198 0 0 0 chr1 43457163 43457185 -153738247 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 916 349 250 113 0 chr1 43457383 43457507 -153737925 + MER2 DNA MER2_type 86 223 -122 7 916 423 0 0 0 chr1 43460220 43460267 -153735165 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 916 213 119 0 0 chr1 43460564 43460606 -153734826 + (T)n Simple_repeat Simple_repeat 1 42 0 7 916 204 327 0 0 chr1 43461086 43461138 -153734294 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 7 916 1465 241 104 73 chr1 43461581 43462033 -153733399 - Lx6 LINE L1 -4 7456 6991 7 916 1272 248 127 19 chr1 43462034 43462396 -153733036 + Lx6 LINE L1 6597 6997 -463 7 916 202 158 0 26 chr1 43463330 43463369 -153732063 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 916 315 85 0 0 chr1 43463375 43463422 -153732010 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 916 492 326 7 14 chr1 43463424 43463570 -153731862 - RSINE1 SINE B4 -18 147 3 7 916 757 244 91 0 chr1 43463593 43463790 -153731642 - B3 SINE B2 -1 215 1 7 916 284 310 8 87 chr1 43463798 43463925 -153731507 - PB1D10 SINE Alu 0 117 1 7 916 510 149 0 0 chr1 43464059 43464146 -153731286 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 916 1248 103 37 26 chr1 43464306 43464495 -153730937 - B2_Mm2 SINE B2 -4 191 1 7 916 495 0 0 0 chr1 43465007 43465062 -153730370 + (TTTCC)n Simple_repeat Simple_repeat 1 55 0 7 916 331 346 0 0 chr1 43465090 43465191 -153730241 + B1F SINE Alu 1 101 -48 7 916 279 265 180 46 chr1 43465735 43465929 -153729503 + RLTR28 LTR ERVL 123 342 -182 7 916 274 224 0 29 chr1 43465949 43466018 -153729414 + RLTR28 LTR ERVL 444 510 -14 7 916 24 0 0 0 chr1 43468103 43468127 -153727305 + AT_rich Low_complexity Low_complexity 1 24 0 7 916 241 215 9 147 chr1 43468204 43468272 -153727160 - L1M5 LINE L1 -380 5799 5745 7 916 2468 160 34 2 chr1 43468272 43468680 -153726752 - MTC LTR MaLR 0 421 1 7 916 241 215 9 147 chr1 43468680 43468720 -153726712 - L1M5 LINE L1 -435 5744 5706 7 916 229 352 39 16 chr1 43469480 43469607 -153725825 - MIRc SINE MIR -121 147 18 7 916 639 202 108 0 chr1 43469667 43469796 -153725636 - B1_Mus1 SINE Alu -3 145 3 7 916 210 350 43 12 chr1 43469825 43469987 -153725445 + MER5A DNA MER1_type 16 182 -7 7 916 441 0 0 0 chr1 43470938 43470987 -153724445 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 916 513 0 0 0 chr1 43470987 43471043 -153724389 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 916 321 26 0 0 chr1 43472159 43472197 -153723235 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 916 519 17 0 0 chr1 43472200 43472260 -153723172 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 916 319 295 21 79 chr1 43472297 43472437 -153722995 + MLT1A1 LTR MaLR 268 399 -9 7 916 407 239 25 66 chr1 43472677 43472798 -153722634 + PB1D10 SINE Alu 2 117 0 7 916 205 312 167 0 chr1 43472900 43473038 -153722394 + L2 LINE L2 2509 2669 -750 7 916 2297 90 12 3 chr1 43473861 43474185 -153721247 - ORR1A2 LTR MaLR 0 327 1 7 916 221 242 0 29 chr1 43474397 43474448 -153720984 + T-rich Low_complexity Low_complexity 17 66 0 7 916 1252 35 0 0 chr1 43474448 43474593 -153720839 - B1_Mm SINE Alu -2 145 1 7 916 221 242 0 29 chr1 43474593 43474609 -153720823 + T-rich Low_complexity Low_complexity 1 16 0 7 916 372 185 12 12 chr1 43474705 43474787 -153720645 + B4A SINE B4 10 91 -201 7 916 12272 83 25 20 chr1 43475221 43477708 -153717724 + L1VL2 LINE L1 194 2695 -920 7 916 213 39 0 0 chr1 43477708 43477734 -153717698 + (CCCTAA)n Simple_repeat Simple_repeat 5 30 0 7 916 1263 97 0 0 chr1 43477734 43478012 -153717420 + (CCCTAG)n Simple_repeat Simple_repeat 1 278 0 7 916 202 316 83 58 chr1 43478465 43478586 -153716846 - L3b LINE CR1 -23 459 336 7 916 369 0 0 0 chr1 43479020 43479061 -153716371 + (CATA)n Simple_repeat Simple_repeat 2 42 0 7 916 955 283 45 105 chr1 43480603 43480768 -153714664 - MTD LTR MaLR 0 419 285 7 916 1041 89 0 0 chr1 43480768 43480914 -153714518 + (GGGA)n Simple_repeat Simple_repeat 4 149 0 7 916 955 283 45 105 chr1 43480914 43481194 -153714238 - MTD LTR MaLR -135 284 1 7 916 1167 48 0 20 chr1 43481693 43481841 -153713591 + B1_Mm SINE Alu 1 145 -2 7 916 475 213 79 93 chr1 43481872 43481949 -153713483 + B1_Mur1 SINE Alu 12 94 -55 7 916 1051 181 61 19 chr1 43481949 43482163 -153713269 - URR1B DNA MER1_type -2 223 1 7 916 475 213 79 93 chr1 43482163 43482225 -153713207 + B1_Mur1 SINE Alu 95 149 0 7 916 464 273 95 86 chr1 43482275 43482600 -153712832 - MLT1D LTR MaLR -137 368 41 7 916 442 193 15 7 chr1 43482624 43482743 -153712689 + MTE2a LTR MaLR 303 421 0 7 916 186 43 0 0 chr1 43484738 43484761 -153710671 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 7 916 2292 182 117 32 chr1 43485244 43485772 -153709660 - RMER15 LTR ERVL -2 573 1 7 916 435 314 21 28 chr1 43486275 43486419 -153709013 - B1F SINE Alu -6 143 1 7 916 515 180 0 9 chr1 43487382 43487494 -153707938 + GA-rich Low_complexity Low_complexity 3 113 0 7 916 578 353 75 35 chr1 43487665 43488144 -153707288 - LTR40a LTR ERVL -20 442 1 7 916 1381 170 5 0 chr1 43488278 43488502 -153706930 - URR1B DNA MER1_type 0 225 1 7 916 564 15 0 0 chr1 43489172 43489237 -153706195 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 916 369 0 0 0 chr1 43489237 43489277 -153706155 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 916 566 255 81 81 chr1 43489366 43489441 -153705991 - B4A SINE B4 -83 209 125 7 916 378 0 0 0 chr1 43489441 43489483 -153705949 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 916 566 255 81 81 chr1 43489483 43489616 -153705816 - B4A SINE B4 -168 124 1 7 916 321 247 0 43 chr1 43490693 43490786 -153704646 - MTEa LTR MaLR -43 336 248 7 916 349 258 130 52 chr1 43491044 43491302 -153704130 + MLT1B LTR MaLR 37 401 -66 7 916 1344 84 28 0 chr1 43492271 43492450 -153702982 - B2_Mm2 SINE B2 -10 185 2 7 916 207 0 0 0 chr1 43492527 43492550 -153702882 + (T)n Simple_repeat Simple_repeat 1 23 0 7 916 419 262 80 18 chr1 43493560 43493723 -153701709 + MLT1D LTR MaLR 17 189 -316 7 916 1372 184 81 56 chr1 43493728 43494085 -153701347 - ORR1D1 LTR MaLR 0 374 9 7 916 384 300 11 0 chr1 43494272 43494362 -153701070 + PB1D10 SINE Alu 2 92 -25 7 916 649 181 44 22 chr1 43495063 43495199 -153700233 - B1F SINE Alu -1 148 10 7 916 231 293 0 0 chr1 43495148 43495206 -153700226 - B4A SINE B4 -147 145 88 7 916 250 253 23 92 chr1 43495984 43496071 -153699361 - ID4 SINE ID 0 83 3 7 916 449 156 16 0 chr1 43496698 43496826 -153698606 + (CAGAGA)n Simple_repeat Simple_repeat 1 130 0 7 916 351 269 30 0 chr1 43496845 43496979 -153698453 + (CAGAGA)n Simple_repeat Simple_repeat 4 141 0 7 916 415 346 5 20 chr1 43497724 43497919 -153697513 + MER2 DNA MER2_type 116 307 -38 7 916 269 305 66 41 chr1 43498504 43498721 -153696711 + MLT1C LTR MaLR 53 273 -194 7 916 249 57 0 0 chr1 43498973 43499008 -153696424 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 916 1147 22 7 0 chr1 43499008 43499143 -153696289 - B1_Mm SINE Alu -8 139 4 7 916 242 294 0 67 chr1 43499531 43499666 -153695766 - CYRA11_Mm Unknown Y-chromosome -262 355 230 7 916 691 145 0 156 chr1 43499567 43499747 -153695685 + URR1A DNA MER1_type 75 226 0 7 916 256 269 25 25 chr1 43499911 43499991 -153695441 + B3A SINE B2 1 80 -118 7 916 316 135 19 0 chr1 43500140 43500192 -153695240 - ORR1C2 LTR MaLR 0 384 332 1 916 348 24 0 0 chr1 43500193 43500234 -153695198 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 916 189 0 0 0 chr1 43500234 43500254 -153695178 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 916 2153 132 95 3 chr1 43500284 43500641 -153694791 + ORR1B1 LTR MaLR 1 390 -4 4 916 1814 32 0 0 chr1 43500651 43500871 -153694561 + L1Md_F3 LINE L1 6364 6583 -1 5 916 351 0 0 0 chr1 43500881 43500920 -153694512 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 916 369 0 0 0 chr1 43500920 43500960 -153694472 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 916 1165 225 105 7 chr1 43500977 43501263 -153694169 - ORR1C2 LTR MaLR -67 317 4 1 916 23 68 0 0 chr1 43502511 43502555 -153692877 + GC_rich Low_complexity Low_complexity 1 44 0 8 916 26 104 0 0 chr1 43502574 43502670 -153692762 + GC_rich Low_complexity Low_complexity 1 96 0 9 916 23 33 0 0 chr1 43502797 43502827 -153692605 + GC_rich Low_complexity Low_complexity 1 30 0 1 916 21 0 0 0 chr1 43502933 43502954 -153692478 + GC_rich Low_complexity Low_complexity 1 21 0 1 916 207 0 0 0 chr1 43504038 43504061 -153691371 + (T)n Simple_repeat Simple_repeat 1 23 0 1 916 269 26 26 0 chr1 43505367 43505405 -153690027 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 916 1187 35 0 7 chr1 43505405 43505543 -153689889 - B1_Mus2 SINE Alu -8 139 2 1 916 325 200 143 11 chr1 43506439 43506530 -153688902 - PB1D7 SINE Alu 0 120 18 1 916 1619 190 144 20 chr1 43506749 43507151 -153688281 - L1_Rod LINE L1 -73 5774 5323 1 916 683 136 369 14 chr1 43507829 43508042 -153687390 - MTC LTR MaLR 0 421 134 1 916 309 325 64 47 chr1 43508205 43508493 -153686939 - MLT1C LTR MaLR 0 467 100 1 916 766 232 28 22 chr1 43508549 43508730 -153686702 - B3A SINE B2 -16 182 1 1 916 225 0 0 0 chr1 43508769 43508794 -153686638 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 916 1635 27 11 0 chr1 43508794 43508981 -153686451 - B2_Mm1a SINE B2 -4 189 1 2 916 502 169 138 41 chr1 43508982 43509105 -153686327 - B1_Mur1 SINE Alu -14 135 1 2 916 242 321 82 63 chr1 43509172 43509378 -153686054 + MER2 DNA MER2_type 108 317 -28 2 916 410 309 127 5 chr1 43510865 43511020 -153684412 - Charlie5 DNA MER1_type -22 2602 2422 2 916 183 42 0 0 chr1 43511020 43511044 -153684388 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 916 410 309 127 5 chr1 43511044 43511093 -153684339 - Charlie5 DNA MER1_type -203 2421 2374 2 916 240 217 0 0 chr1 43511298 43511344 -153684088 - MIR SINE MIR -42 220 175 2 916 310 288 172 15 chr1 43513074 43513208 -153682224 + MER20 DNA MER1_type 39 193 -26 2 916 212 309 135 21 chr1 43514974 43515070 -153680362 - L2c LINE L2 -5 3382 3276 2 916 533 160 85 0 chr1 43515581 43515675 -153679757 - PB1D9 SINE Alu -8 112 11 2 917 446 115 26 0 chr1 43516418 43516496 -153678936 + (TCCC)n Simple_repeat Simple_repeat 4 83 0 3 917 280 261 0 0 chr1 43516532 43516597 -153678835 - ID2 SINE ID -18 65 1 3 917 262 303 106 35 chr1 43516733 43516846 -153678586 - B1F2 SINE Alu -19 130 10 3 917 331 318 15 8 chr1 43516918 43517048 -153678384 - L1MC3 LINE L1 -112 7673 7543 3 917 822 267 82 119 chr1 43517225 43517603 -153677829 - MTE2a LTR MaLR 0 379 16 3 917 344 235 132 16 chr1 43517603 43517724 -153677708 - L1MC3 LINE L1 -490 7295 7161 3 917 1243 109 49 5 chr1 43517746 43517930 -153677502 - B2_Mm2 SINE B2 -2 193 2 3 917 182 390 39 20 chr1 43518110 43518212 -153677220 + MER5A DNA MER1_type 61 164 -25 3 917 1786 178 144 11 chr1 43518347 43518716 -153676716 + MTC LTR MaLR 1 418 -3 3 917 312 27 0 0 chr1 43519116 43519153 -153676279 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 917 291 336 136 0 chr1 43519201 43519311 -153676121 - PB1 SINE Alu -2 125 1 3 917 206 121 0 0 chr1 43519323 43519356 -153676076 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4 917 474 213 25 107 chr1 43519357 43519478 -153675954 - PB1D9 SINE Alu -9 111 1 4 917 235 257 40 135 chr1 43520199 43520325 -153675107 + Charlie4a DNA MER1_type 272 385 -123 4 917 385 340 125 0 chr1 43521065 43521209 -153674223 - MIRb SINE MIR -9 259 98 4 917 310 167 0 0 chr1 43521674 43521728 -153673704 - ID4 SINE ID -28 55 2 4 917 213 39 0 0 chr1 43522501 43522527 -153672905 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 917 276 292 73 0 chr1 43522869 43522965 -153672467 + MLT1E1A LTR MaLR 578 680 0 4 917 418 223 117 0 chr1 43524367 43524470 -153670962 + PB1D10 SINE Alu 2 116 -1 4 917 334 313 61 91 chr1 43525270 43525435 -153669997 - MER21B LTR ERV1 -200 663 504 4 917 270 281 0 45 chr1 43526438 43526505 -153668927 - ID4 SINE ID -11 72 9 4 917 249 140 0 0 chr1 43527332 43527389 -153668043 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 917 625 298 171 35 chr1 43527391 43527648 -153667784 - B4A SINE B4 0 292 1 5 917 524 221 240 48 chr1 43529259 43529572 -153665860 + MTE2b LTR MaLR 26 375 -4 5 917 462 279 102 74 chr1 43529650 43529906 -153665526 + MER2 DNA MER2_type 18 280 -65 5 917 279 0 0 0 chr1 43530796 43530827 -153664605 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 917 352 340 130 45 chr1 43531616 43532016 -153663416 - LTR33B LTR ERVL -15 488 55 5 917 266 0 0 29 chr1 43533031 43533066 -153662366 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 917 1061 103 7 0 chr1 43534167 43534313 -153661119 - B1_Mus2 SINE Alu 0 147 1 5 917 473 283 212 17 chr1 43534517 43534758 -153660674 + MLT1A0 LTR MaLR 11 298 -67 5 917 228 192 62 37 chr1 43536155 43536236 -153659196 - B2_Mm2 SINE B2 -9 186 104 5 917 640 339 13 25 chr1 43536187 43536423 -153659009 - B4A SINE B4 0 292 60 6 917 1261 204 12 16 chr1 43536462 43536711 -153658721 - MTD LTR MaLR -10 409 162 6 917 329 289 120 32 chr1 43536691 43536816 -153658616 - MLT1-int LTR MaLR -67 1304 1169 6 917 308 279 25 0 chr1 43538259 43538338 -153657094 - ID4_ SINE ID 0 83 3 6 917 269 284 47 47 chr1 43538343 43538450 -153656982 - PB1D10 SINE Alu -1 116 10 6 917 198 0 0 0 chr1 43539049 43539071 -153656361 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 917 3020 78 20 0 chr1 43540583 43540992 -153654440 - MT2B2 LTR ERVL 0 584 168 6 917 21 0 0 0 chr1 43542854 43542875 -153652557 + GC_rich Low_complexity Low_complexity 1 21 0 6 917 428 300 75 73 chr1 43543311 43543386 -153652046 + MLT1A LTR MaLR 75 166 -208 6 917 537 246 17 0 chr1 43543386 43543504 -153651928 + PB1D9 SINE Alu 1 120 0 6 917 428 297 67 75 chr1 43543504 43543714 -153651718 + MLT1A LTR MaLR 167 374 0 6 917 770 244 66 40 chr1 43544479 43544705 -153650727 - Tigger5 DNA MER2_type 0 2406 2175 7 917 22 0 0 0 chr1 43544705 43544727 -153650705 + AT_rich Low_complexity Low_complexity 1 22 0 7 917 332 293 71 0 chr1 43544791 43544890 -153650542 - Tigger5 DNA MER2_type -2241 165 60 7 917 660 26 0 0 chr1 43546005 43546083 -153649349 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 7 917 491 286 31 55 chr1 43546141 43546304 -153649128 - RSINE1 SINE B4 -4 161 3 7 917 236 299 122 10 chr1 43546309 43546407 -153649025 - MER5A DNA MER1_type -39 150 42 7 917 2597 209 50 116 chr1 43546782 43547054 -153648378 + Lx7 LINE L1 6900 7164 -532 7 917 3036 59 22 17 chr1 43547054 43547465 -153647967 - L1_Mus3 LINE L1 -2 6636 6224 7 917 2597 209 50 116 chr1 43547465 43547676 -153647756 + Lx7 LINE L1 7165 7354 -342 7 917 225 0 0 0 chr1 43547676 43547701 -153647731 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 917 2597 209 50 116 chr1 43547701 43547935 -153647497 + Lx7 LINE L1 7355 7558 -138 7 917 1238 179 4 9 chr1 43547935 43548161 -153647271 - URR1B DNA MER1_type 0 225 1 7 917 2597 209 50 116 chr1 43548161 43548216 -153647216 + Lx7 LINE L1 7559 7606 -90 7 917 189 0 0 0 chr1 43548216 43548237 -153647195 + (GGGA)n Simple_repeat Simple_repeat 2 22 0 7 917 2597 209 50 116 chr1 43548237 43548314 -153647118 + Lx7 LINE L1 7607 7695 -1 7 917 458 0 0 34 chr1 43548348 43548407 -153647025 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 8 917 416 51 17 0 chr1 43550768 43550827 -153644605 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 917 374 253 41 21 chr1 43551043 43551140 -153644292 + Tigger5 DNA MER2_type 3 101 -2305 8 917 195 42 0 0 chr1 43551590 43551614 -153643818 + (T)n Simple_repeat Simple_repeat 1 24 0 8 917 325 353 109 41 chr1 43552063 43552230 -153643202 + MER2 DNA MER2_type 1 166 -179 8 917 381 75 0 0 chr1 43552230 43552283 -153643149 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 917 325 353 109 41 chr1 43552283 43552381 -153643051 + MER2 DNA MER2_type 167 283 -62 8 917 313 250 22 33 chr1 43552429 43552520 -153642912 - L1MC1 LINE L1 -156 6177 6088 8 917 23 0 0 0 chr1 43552637 43552660 -153642772 + AT_rich Low_complexity Low_complexity 1 23 0 8 917 396 294 78 21 chr1 43552908 43553086 -153642346 + MER20 DNA MER1_type 1 214 -5 8 917 689 233 20 14 chr1 43555565 43555713 -153639719 - B1_Mur2 SINE Alu 0 149 1 8 917 649 207 44 7 chr1 43556589 43556725 -153638707 - B1_Mur2 SINE Alu 0 149 9 9 917 262 293 167 57 chr1 43556794 43556986 -153638446 - Lx8 LINE L1 -257 7216 7004 9 917 946 192 116 62 chr1 43557379 43557768 -153637664 - RMER17C LTR ERVK 0 410 1 9 917 534 256 157 25 chr1 43557770 43558006 -153637426 - MER44A DNA MER2_type -63 276 10 9 917 1953 165 88 3 chr1 43558351 43558739 -153636693 + MTC LTR MaLR 1 421 0 9 917 1628 203 96 3 chr1 43559272 43559647 -153635785 + MTD LTR MaLR 1 410 -9 9 917 302 0 26 0 chr1 43561431 43561469 -153633963 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 9 917 423 290 104 8 chr1 43561571 43561696 -153633736 + B1F SINE Alu 5 141 -8 9 917 750 167 53 0 chr1 43561737 43561869 -153633563 + B1_Mur2 SINE Alu 2 140 -9 9 917 401 220 100 0 chr1 43562144 43562244 -153633188 + B1F SINE Alu 32 141 -8 9 917 430 285 53 7 chr1 43562900 43563079 -153632353 - L1MA9 LINE L1 -392 5911 5720 1 917 350 293 81 0 chr1 43563561 43563684 -153631748 + B1F SINE Alu 4 136 -13 1 917 773 123 43 0 chr1 43564711 43564849 -153630583 + URR1B DNA MER1_type 82 225 0 1 917 311 248 9 56 chr1 43565019 43565126 -153630306 + MTEa LTR MaLR 278 379 0 1 917 23 33 0 0 chr1 43565239 43565269 -153630163 + AT_rich Low_complexity Low_complexity 1 30 0 1 917 736 213 32 14 chr1 43566178 43566358 -153629074 - B3A SINE B2 -18 198 16 1 917 227 83 0 62 chr1 43566668 43566732 -153628700 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 1 917 938 250 0 24 chr1 43566782 43566995 -153628437 - B3 SINE B2 -4 212 5 1 917 259 238 0 12 chr1 43567505 43567586 -153627846 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 1 917 2816 78 86 86 chr1 43570087 43570562 -153624870 - IAPLTR2_Mm LTR ERVK 0 475 1 1 917 4664 95 23 1 chr1 43571461 43572125 -153623307 - Lx3_Mus LINE L1 -187 6822 6145 1 917 1006 82 7 0 chr1 43572121 43572256 -153623176 + L1_Mur1 LINE L1 4963 5098 -788 1 917 11749 70 20 8 chr1 43572262 43573900 -153621532 - L1_Mur1 LINE L1 -1533 4353 2696 1 917 2124 154 65 23 chr1 43573902 43574474 -153620958 - L1_Mur1 LINE L1 -5969 1015 115 1 917 5634 63 1 6 chr1 43574568 43575282 -153620150 - L1_Mus2 LINE L1 0 6566 5856 1 917 265 226 33 16 chr1 43576788 43576874 -153618558 + ORR1C2 LTR MaLR 2 85 -282 1 917 515 212 26 0 chr1 43576906 43577057 -153618375 + CT-rich Low_complexity Low_complexity 2 156 0 1 917 683 166 123 7 chr1 43577058 43577204 -153618228 + ORR1C2 LTR MaLR 222 384 0 1 917 362 246 119 0 chr1 43577855 43577973 -153617459 + ORR1E LTR MaLR 15 146 -213 1 917 227 316 66 33 chr1 43578723 43578844 -153616588 + MIRc SINE MIR 24 148 -120 1 917 289 294 163 16 chr1 43579241 43579493 -153615939 - L1MC3 LINE L1 -142 7643 7355 1 917 394 102 14 14 chr1 43579856 43579926 -153615506 + (TCC)n Simple_repeat Simple_repeat 1 70 0 1 917 274 56 0 0 chr1 43579928 43579964 -153615468 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 1 917 520 254 45 35 chr1 43580619 43580784 -153614648 + B3A SINE B2 37 205 -11 1 917 234 314 70 0 chr1 43580828 43580914 -153614518 - RMER30 DNA MER1_type -101 101 10 1 917 214 270 75 53 chr1 43581313 43581446 -153613986 - L2 LINE L2 -741 2678 2543 1 917 192 100 66 16 chr1 43581514 43581575 -153613857 + T-rich Low_complexity Low_complexity 2 65 0 1 917 500 283 264 3 chr1 43582614 43582958 -153612474 + L1MC3 LINE L1 7247 7680 -105 1 917 263 358 83 57 chr1 43584807 43585029 -153610403 + MIRb SINE MIR 3 223 -45 1 917 297 151 0 0 chr1 43586519 43586572 -153608860 + CT-rich Low_complexity Low_complexity 2 54 0 1 917 864 246 218 30 chr1 43586812 43587248 -153608184 - RCHARR1 DNA MER1_type -182 792 276 1 917 291 308 77 0 chr1 43587312 43587429 -153608003 - RCHARR1 DNA MER1_type -846 128 3 1 917 189 0 0 0 chr1 43587592 43587613 -153607819 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 1 917 677 261 81 99 chr1 43587613 43587933 -153607499 - MTEb LTR MaLR -66 313 1 1 917 773 255 374 3 chr1 43587934 43588316 -153607116 - MTEb-int LTR MaLR -20 1560 1037 1 917 389 290 15 8 chr1 43589332 43589464 -153605968 - MER31B LTR ERV1 -207 259 127 1 917 368 190 35 12 chr1 43589633 43589730 -153605702 - L1MD LINE L1 -554 5779 5681 1 917 405 268 121 35 chr1 43589727 43589959 -153605473 - L1MD3 LINE L1 -15 7980 7729 1 917 394 149 11 11 chr1 43590688 43590776 -153604656 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 917 494 327 91 5 chr1 43592629 43592838 -153602594 - L3 LINE CR1 -89 4400 4174 1 917 528 319 35 21 chr1 43593050 43593194 -153602238 - RSINE1 SINE B4 -13 152 7 1 917 262 247 62 55 chr1 43593603 43593859 -153601573 - RLTR15 LTR ERVK -82 277 45 1 917 396 59 0 0 chr1 43594812 43594863 -153600569 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 917 383 290 7 82 chr1 43595241 43595376 -153600056 - B1F SINE Alu -13 136 12 1 917 189 107 0 0 chr1 43596700 43596728 -153598704 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 917 980 157 216 0 chr1 43597321 43597506 -153597926 - URR1A DNA MER1_type 0 226 2 1 917 741 292 60 32 chr1 43597532 43597780 -153597652 + B4A SINE B4 28 282 -10 1 917 23 33 0 0 chr1 43597784 43597814 -153597618 + AT_rich Low_complexity Low_complexity 1 30 0 1 917 24 32 0 0 chr1 43598333 43598364 -153597068 + AT_rich Low_complexity Low_complexity 1 31 0 1 917 455 219 144 34 chr1 43598551 43598669 -153596763 + ID_B1 SINE B4 86 216 -8 1 917 504 329 100 39 chr1 43598676 43598935 -153596497 + B4A SINE B4 7 281 -11 1 917 250 340 53 33 chr1 43599550 43599702 -153595730 - MIRb SINE MIR -72 196 42 1 917 515 291 134 32 chr1 43600742 43601019 -153594413 + MER2 DNA MER2_type 11 315 -30 1 917 748 187 228 37 chr1 43601564 43601753 -153593679 + URR1A DNA MER1_type 2 226 0 1 917 360 0 0 0 chr1 43601815 43601855 -153593577 + (TGG)n Simple_repeat Simple_repeat 2 41 0 1 917 21 36 0 0 chr1 43602691 43602719 -153592713 + AT_rich Low_complexity Low_complexity 1 28 0 1 917 3501 30 2 0 chr1 43603694 43604089 -153591343 - MTA_Mm LTR MaLR 0 396 1 1 917 697 223 51 11 chr1 43606587 43606764 -153588668 - MTD LTR MaLR -235 184 1 1 917 198 0 0 0 chr1 43608534 43608556 -153586876 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1 917 1073 76 0 0 chr1 43608572 43608717 -153586715 - B2_Mm2 SINE B2 -46 149 5 1 917 683 171 26 0 chr1 43609492 43609609 -153585823 + Lx5 LINE L1 6164 6283 -767 1 917 285 29 0 0 chr1 43609618 43609652 -153585780 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 917 1598 132 83 35 chr1 43609655 43609945 -153585487 + Lx5 LINE L1 6743 7046 -4 1 917 236 277 117 0 chr1 43611596 43611690 -153583742 + Tigger7 DNA MER2_type 2357 2461 -30 1 917 859 250 29 10 chr1 43614619 43614825 -153580607 - B3 SINE B2 -5 211 2 1 917 1637 204 90 5 chr1 43615184 43615563 -153579869 - MTD LTR MaLR -8 411 1 1 917 22 0 0 0 chr1 43615759 43615781 -153579651 + AT_rich Low_complexity Low_complexity 1 22 0 1 917 4173 225 43 51 chr1 43615792 43616836 -153578596 - Lx7 LINE L1 -281 7415 6380 1 917 180 0 0 0 chr1 43618197 43618217 -153577215 + (T)n Simple_repeat Simple_repeat 1 20 0 1 917 1503 58 16 10 chr1 43618549 43618742 -153576690 + B2_Mm2 SINE B2 2 195 0 1 917 189 0 0 0 chr1 43619216 43619237 -153576195 + (A)n Simple_repeat Simple_repeat 1 21 0 1 917 1072 269 121 24 chr1 43619465 43620003 -153575429 - L1MB3 LINE L1 -9 6174 5585 1 917 189 371 0 0 chr1 43620260 43620330 -153575102 + MER5A DNA MER1_type 17 86 -103 1 917 541 237 137 0 chr1 43620426 43620557 -153574875 + B1F SINE Alu 1 149 0 1 917 261 263 40 0 chr1 43622375 43622451 -153572981 - ID_B1 SINE B4 -133 91 13 1 917 474 272 59 0 chr1 43624130 43624266 -153571166 + Tigger7 DNA MER2_type 245 388 -2103 1 917 205 331 8 24 chr1 43625109 43625236 -153570196 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 917 222 194 0 0 chr1 43626667 43626729 -153568703 + T-rich Low_complexity Low_complexity 1 62 0 1 917 237 82 40 20 chr1 43627079 43627129 -153568303 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 917 288 261 77 33 chr1 43627468 43627559 -153567873 + B4A SINE B4 30 124 -168 1 917 407 229 8 2 chr1 43627788 43627896 -153567536 - B4 SINE B4 -53 112 1 1 917 1050 66 73 0 chr1 43628665 43628802 -153566630 - B1_Mus1 SINE Alu 0 148 2 1 917 377 164 82 0 chr1 43629452 43629525 -153565907 - PB1D10 SINE Alu -7 110 32 1 917 1684 199 96 5 chr1 43629768 43630152 -153565280 + MTD LTR MaLR 1 419 0 1 917 708 218 54 39 chr1 43630243 43630448 -153564984 + B3 SINE B2 1 208 -8 1 917 607 112 19 0 chr1 43631021 43631128 -153564304 + (TAGA)n Simple_repeat Simple_repeat 3 111 0 1 917 990 251 67 84 chr1 43632812 43632865 -153562567 - MTEb LTR MaLR 0 379 333 1 917 634 303 78 19 chr1 43632865 43633134 -153562298 + B4A SINE B4 2 286 -6 1 917 990 251 67 84 chr1 43633134 43633147 -153562285 - MTEb LTR MaLR -47 332 332 1 917 285 75 0 0 chr1 43633147 43633187 -153562245 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 917 990 251 67 84 chr1 43633187 43633463 -153561969 - MTEb LTR MaLR -47 332 42 1 917 1143 108 27 5 chr1 43633454 43633640 -153561792 + B2_Mm2 SINE B2 6 195 0 1 917 189 0 0 0 chr1 43633718 43633739 -153561693 + (A)n Simple_repeat Simple_repeat 1 21 0 1 917 1231 272 276 12 chr1 43633804 43634542 -153560890 - MTE-int LTR MaLR -9 1571 639 1 917 278 232 92 38 chr1 43634639 43634760 -153560672 - MLT1A1 LTR MaLR -281 127 1 1 917 7791 67 5 40 chr1 43635457 43636518 -153558914 - L1_Mus4 LINE L1 -2 6634 5611 1 917 9996 108 18 6 chr1 43637505 43639883 -153555549 + Lx4A LINE L1 4635 7056 -2 1 917 1107 199 40 0 chr1 43641298 43641524 -153553908 - MTD LTR MaLR -18 401 167 1 917 635 287 79 16 chr1 43641610 43641915 -153553517 + MER33 DNA MER1_type 1 324 0 1 917 297 200 14 14 chr1 43642679 43642750 -153552682 + PB1 SINE Alu 54 124 -3 1 917 1778 160 6 22 chr1 43643107 43643427 -153552005 + Lx LINE L1 6339 6653 -1 1 917 798 244 17 6 chr1 43643514 43643695 -153551737 - B3 SINE B2 -1 215 33 1 917 971 70 41 0 chr1 43643771 43643942 -153551490 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 917 723 312 95 14 chr1 43643985 43644281 -153551151 + MER2 DNA MER2_type 26 345 0 1 917 576 152 0 0 chr1 43644302 43644401 -153551031 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 917 253 287 43 50 chr1 43644403 43644565 -153550867 + L1M5 LINE L1 5634 5790 -383 1 917 774 293 45 0 chr1 43645021 43645243 -153550189 - B4A SINE B4 -60 232 1 2 917 237 282 104 22 chr1 43645352 43645486 -153549946 - RMER30 DNA MER1_type -55 147 3 2 114 956 251 0 5 chr1 43646831 43647039 -153548393 + B3 SINE B2 5 211 -5 2 918 899 169 6 0 chr1 43647046 43647218 -153548214 + GA-rich Low_complexity Low_complexity 2 174 0 2 918 512 358 90 13 chr1 43648449 43648837 -153546595 + LTR31 LTR ERV1 153 570 -49 2 918 615 250 138 0 chr1 43649184 43649344 -153546088 - B3 SINE B2 -15 201 20 2 918 2075 138 68 16 chr1 43649740 43650122 -153545310 - MTB_Mm LTR MaLR 0 407 6 2 918 180 0 0 0 chr1 43650262 43650282 -153545150 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2 918 396 0 0 0 chr1 43650282 43650326 -153545106 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 918 699 306 11 0 chr1 43652932 43653115 -153542317 - Tigger7 DNA MER2_type -2274 217 33 2 918 228 163 20 39 chr1 43653786 43653837 -153541595 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2 918 799 308 72 41 chr1 43654231 43654576 -153540856 - MTEa LTR MaLR -7 372 17 2 918 22 56 0 0 chr1 43655056 43655092 -153540340 + AT_rich Low_complexity Low_complexity 1 36 0 2 918 364 264 68 60 chr1 43655153 43655217 -153540215 - ID_B1 SINE B4 0 224 153 2 918 4844 98 38 0 chr1 43655217 43655903 -153539529 + Lx3B LINE L1 6261 6972 -1 2 918 364 264 68 60 chr1 43655903 43655914 -153539518 - ID_B1 SINE B4 -72 152 147 2 918 186 71 0 0 chr1 43655914 43655942 -153539490 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2 918 364 264 68 60 chr1 43655942 43655998 -153539434 - ID_B1 SINE B4 -78 146 91 2 918 278 115 0 16 chr1 43657431 43657493 -153537939 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 918 893 35 0 0 chr1 43657497 43657612 -153537820 + B1_Mus1 SINE Alu 25 139 -9 2 918 239 71 24 0 chr1 43657612 43657654 -153537778 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 918 185 0 0 39 chr1 43657665 43657691 -153537741 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 2 918 500 267 0 0 chr1 43657800 43657916 -153537516 + B3A SINE B2 2 117 -81 2 918 23 33 0 0 chr1 43658715 43658745 -153536687 + AT_rich Low_complexity Low_complexity 1 30 0 2 918 1648 186 21 33 chr1 43658936 43659270 -153536162 - ORR1D2 LTR MaLR -33 337 8 2 918 363 82 0 0 chr1 43659278 43659327 -153536105 - ORR1D2 LTR MaLR -314 56 8 2 918 3138 60 36 3 chr1 43660065 43660452 -153534980 - MTB LTR MaLR 0 400 1 2 918 6712 108 36 74 chr1 43660452 43661594 -153533838 - MTB-int LTR MaLR 0 1098 1 2 918 2508 82 85 26 chr1 43661594 43661972 -153533460 - MTB LTR MaLR 0 400 1 2 918 416 221 0 0 chr1 43662734 43662811 -153532621 - B4 SINE B4 -214 78 2 2 918 242 299 22 15 chr1 43663782 43663918 -153531514 + (CATA)n Simple_repeat Simple_repeat 4 140 0 2 918 807 286 29 61 chr1 43665273 43665586 -153529846 - MLT1A0 LTR MaLR -12 353 51 2 918 519 31 0 0 chr1 43665632 43665697 -153529735 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 918 530 310 16 81 chr1 43665772 43665958 -153529474 - B4 SINE B4 -69 223 50 2 918 2382 124 50 162 chr1 43665987 43666603 -153528829 + ORR1A4-int LTR MaLR 1415 1961 -2 2 918 1689 136 17 103 chr1 43666605 43666965 -153528467 + ORR1A4 LTR MaLR 1 329 0 2 918 252 149 0 60 chr1 43666969 43667019 -153528413 - L1_Rod LINE L1 -296 5551 5505 2 918 250 357 0 20 chr1 43667033 43667133 -153528299 - MTE2b LTR MaLR -281 98 1 2 918 2038 261 48 24 chr1 43667136 43667891 -153527541 + L1M2 LINE L1 4668 5436 -867 2 918 738 285 119 27 chr1 43667912 43668315 -153527117 + Lx9 LINE L1 5508 5976 -1668 2 918 466 297 18 49 chr1 43668493 43668656 -153526776 + RSINE1 SINE B4 3 160 -5 2 918 8218 132 26 6 chr1 43668708 43670806 -153524626 + Lx LINE L1 4524 6654 0 2 918 3948 287 72 10 chr1 43670823 43672025 -153523407 + Lx8 LINE L1 6196 7472 -1 2 918 426 270 36 0 chr1 43672046 43672183 -153523249 + L1MB3 LINE L1 5989 6130 -53 2 918 182 200 0 0 chr1 43672486 43672526 -153522906 + MIR SINE MIR 82 121 -87 2 918 233 231 0 25 chr1 43673342 43673422 -153522010 + CT-rich Low_complexity Low_complexity 4 81 0 2 918 388 202 11 27 chr1 43673457 43673640 -153521792 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 918 328 357 101 83 chr1 43673844 43674122 -153521310 - LTR16A LTR ERVL -157 294 12 2 918 26 64 0 0 chr1 43674689 43674736 -153520696 + AT_rich Low_complexity Low_complexity 1 47 0 2 918 430 274 33 33 chr1 43674894 43675015 -153520417 - MER5A DNA MER1_type -55 134 14 2 918 432 247 174 60 chr1 43675065 43675407 -153520025 + MLT2B4 LTR ERVL 11 495 -61 2 918 3153 24 0 0 chr1 43675423 43675760 -153519672 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 918 270 158 140 0 chr1 43675772 43675829 -153519603 - PB1D10 SINE Alu -10 107 43 2 918 2676 85 3 14 chr1 43675916 43676274 -153519158 - L1Md_F2 LINE L1 -12 6570 6217 2 918 6612 45 0 0 chr1 43676659 43677455 -153517977 - L1_Mm LINE L1 -1437 4446 3651 2 918 9717 62 1 2 chr1 43677444 43678648 -153516784 + L1_Mm LINE L1 4382 5586 -297 2 918 8672 44 0 11 chr1 43678648 43679643 -153515789 + L1Md_F2 LINE L1 5587 6570 -12 2 918 232 322 45 70 chr1 43680590 43680747 -153514685 + MLT1J2 LTR MaLR 205 357 -91 2 918 22 0 0 0 chr1 43681043 43681065 -153514367 + AT_rich Low_complexity Low_complexity 1 22 0 2 918 228 324 0 0 chr1 43681131 43681195 -153514237 - ID4_ SINE ID -14 69 6 2 918 1440 135 13 26 chr1 43681409 43681637 -153513795 - URR1A DNA MER1_type 0 226 2 2 918 281 298 145 50 chr1 43681905 43682064 -153513368 + MLT1A0 LTR MaLR 60 233 -132 2 918 3042 117 9 2 chr1 43682394 43682821 -153512611 + L1_Mus3 LINE L1 6197 6626 -12 2 918 26216 65 142 4 chr1 43682821 43687393 -153508039 + L1Md_F2 LINE L1 389 5586 -297 2 918 8336 47 29 0 chr1 43687393 43688361 -153507071 + L1Md_F2 LINE L1 5587 6582 0 2 918 246 62 0 0 chr1 43688384 43688416 -153507016 + (A)n Simple_repeat Simple_repeat 1 32 0 2 918 5844 46 24 0 chr1 43688417 43689118 -153506314 + L1Md_F2 LINE L1 5784 6501 -81 2 918 370 292 0 71 chr1 43689631 43689771 -153505661 - L1MA6 LINE L1 -77 6223 6094 2 918 3262 58 14 50 chr1 43691285 43691706 -153503726 - L1_Mus2 LINE L1 0 6566 6161 2 918 198 0 0 0 chr1 43691970 43691992 -153503440 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 918 431 287 0 0 chr1 43691993 43692101 -153503331 + MLT1A1 LTR MaLR 301 408 0 2 918 333 323 72 65 chr1 43692204 43692343 -153503089 + RSINE1 SINE B4 2 141 -24 2 918 316 200 153 73 chr1 43692687 43692811 -153502621 - ORR1E LTR MaLR -220 139 6 2 918 282 269 177 59 chr1 43692883 43692925 -153502507 - LTR37B LTR ERV1 -255 213 169 2 918 2024 198 55 5 chr1 43692925 43693326 -153502106 + MTC LTR MaLR 1 421 0 2 918 282 269 177 59 chr1 43693326 43693469 -153501963 - LTR37B LTR ERV1 -300 168 6 2 918 805 239 11 52 chr1 43693619 43693817 -153501615 - B3 SINE B2 -28 188 14 2 918 646 286 105 71 chr1 43693938 43694825 -153500607 + L1_Mur3 LINE L1 510 1437 -4443 2 918 547 206 0 8 chr1 43695094 43695237 -153500195 + L1_Mur3 LINE L1 1404 1544 -4336 2 918 14794 62 12 13 chr1 43695247 43697069 -153498363 - L1_Mus2 LINE L1 0 6566 4734 2 918 279 0 0 0 chr1 43697069 43697100 -153498332 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 918 14794 89 15 5 chr1 43697100 43697585 -153497847 - L1_Mus2 LINE L1 -1150 4733 4246 2 918 3925 18 121 0 chr1 43697585 43698025 -153497407 - MT2_Mm LTR ERVL 0 493 1 2 918 14794 89 15 5 chr1 43698025 43698452 -153496980 - L1_Mus2 LINE L1 -1638 4245 3820 2 918 4409 221 82 28 chr1 43698452 43699763 -153495669 + L1_Mur3 LINE L1 1542 2922 -2958 2 918 5426 201 34 19 chr1 43699761 43700941 -153494491 + L1_Mur3 LINE L1 4035 5231 -649 2 918 2305 266 47 37 chr1 43700958 43701599 -153493833 + Lx7 LINE L1 6465 7111 -585 2 918 800 111 8 0 chr1 43701652 43701778 -153493654 + (TCCC)n Simple_repeat Simple_repeat 2 128 0 2 918 291 250 20 20 chr1 43701808 43701906 -153493526 + Lx7 LINE L1 7579 7676 -20 2 918 7101 87 22 2 chr1 43701915 43702869 -153492563 - Lx3_Mus LINE L1 -8 7001 6029 2 918 278 186 0 0 chr1 43702904 43702947 -153492485 - B3A SINE B2 -153 45 3 2 918 2847 292 38 18 chr1 43703492 43704410 -153491022 + Lx7 LINE L1 6376 7330 -366 2 918 299 302 58 39 chr1 43705169 43705324 -153490108 - MLT1A1 LTR MaLR -4 404 247 2 918 2063 138 6 6 chr1 43705441 43705761 -153489671 + ORR1A4 LTR MaLR 1 320 -9 2 918 226 288 61 24 chr1 43706061 43706143 -153489289 + MLT1J LTR MaLR 114 198 -314 2 918 241 375 29 9 chr1 43706367 43706472 -153488960 - Tigger7 DNA MER2_type 0 2491 2385 2 918 262 275 12 0 chr1 43706464 43706544 -153488888 - Tigger7 DNA MER2_type -1459 1032 952 2 918 770 301 65 61 chr1 43706546 43706840 -153488592 - Tigger7 DNA MER2_type -2169 322 28 2 918 501 17 0 0 chr1 43707848 43707906 -153487526 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 918 293 314 84 40 chr1 43707964 43708166 -153487266 + L2b LINE L2 2197 2407 -1012 2 918 1909 169 58 84 chr1 43708462 43708889 -153486543 + MTC LTR MaLR 6 421 0 2 918 268 314 174 65 chr1 43708971 43709384 -153486048 + L2b LINE L2 2917 3374 -1 2 918 227 349 126 14 chr1 43709415 43709630 -153485802 - MIRb SINE MIR -21 247 9 2 918 1100 203 157 13 chr1 43710675 43711000 -153484432 - MTD LTR MaLR -14 405 49 2 918 999 148 94 12 chr1 43711599 43711735 -153483697 + B2_Mm2 SINE B2 3 138 -57 2 918 207 0 0 0 chr1 43711735 43711758 -153483674 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 918 999 148 94 12 chr1 43711758 43711792 -153483640 + B2_Mm2 SINE B2 139 187 -8 2 918 509 278 83 38 chr1 43711802 43711959 -153483473 + B4A SINE B4 2 165 -127 2 918 227 31 31 0 chr1 43711965 43711997 -153483435 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 918 195 42 0 0 chr1 43712055 43712079 -153483353 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 918 238 275 25 12 chr1 43713194 43713275 -153482157 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 918 255 305 42 0 chr1 43713339 43713434 -153481998 + L1MD2 LINE L1 6243 6341 -18 2 918 326 164 0 0 chr1 43713766 43713821 -153481611 + RMER19C LTR ERVK 557 611 0 2 918 393 297 116 0 chr1 43714556 43714694 -153480738 - RMER15 LTR ERVL 0 575 422 2 918 436 288 50 14 chr1 43714786 43714927 -153480505 - Lx8 LINE L1 -283 7190 7045 2 918 1140 164 190 9 chr1 43714953 43715169 -153480263 - MTC LTR MaLR 0 421 167 2 918 378 103 10 134 chr1 43715191 43715392 -153480040 + CT-rich Low_complexity Low_complexity 1 176 0 2 918 735 44 0 0 chr1 43715403 43715494 -153479938 + (TTTCC)n Simple_repeat Simple_repeat 2 92 0 2 918 809 179 49 14 chr1 43715494 43715636 -153479796 - B1_Mur3 SINE Alu -1 148 2 2 918 473 175 12 0 chr1 43715638 43715718 -153479714 - MTC LTR MaLR -340 81 1 2 918 2136 170 30 11 chr1 43717131 43717500 -153477932 + ORR1C1 LTR MaLR 1 376 -2 3 918 190 224 39 39 chr1 43717515 43717566 -153477866 + MIR SINE MIR 106 156 -106 3 918 258 164 44 15 chr1 43718315 43718383 -153477049 + T-rich Low_complexity Low_complexity 5 74 0 3 918 1029 214 188 19 chr1 43718833 43719148 -153476284 - ORR1D2 LTR MaLR -1 369 1 3 918 838 151 0 48 chr1 43719179 43719325 -153476107 - B1_Mus1 SINE Alu -4 144 6 3 918 1540 228 97 14 chr1 43719340 43719711 -153475721 - MTD LTR MaLR -14 405 18 3 918 25 83 0 0 chr1 43719797 43719857 -153475575 + AT_rich Low_complexity Low_complexity 1 60 0 3 918 1356 252 83 3 chr1 43720042 43720380 -153475052 + MTEa LTR MaLR 1 365 -14 3 918 8279 150 89 22 chr1 43722254 43723564 -153471868 - L1_Mur3 LINE L1 -2412 3468 2058 3 918 306 0 0 0 chr1 43723564 43723598 -153471834 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 918 8279 150 89 22 chr1 43723598 43724001 -153471431 - L1_Mur3 LINE L1 -3823 2057 1641 3 918 5289 216 93 11 chr1 43723993 43725130 -153470302 - Lx6 LINE L1 -1 7459 6229 3 918 912 259 93 22 chr1 43726355 43726667 -153468765 + RCHARR1 DNA MER1_type 56 389 -585 3 918 1834 140 48 0 chr1 43726679 43727014 -153468418 - RLTR15 LTR ERVK -8 351 1 3 918 716 222 130 0 chr1 43727047 43727393 -153468039 + RCHARR1 DNA MER1_type 439 829 -145 3 918 478 206 39 0 chr1 43727394 43727496 -153467936 + RMER6C LTR ERVK 2 107 -583 3 918 545 117 35 88 chr1 43727484 43727569 -153467863 + MT2B LTR ERVL 181 259 -342 3 918 341 157 0 0 chr1 43727569 43727620 -153467812 + PB1D9 SINE Alu 3 53 -67 3 918 307 325 83 19 chr1 43727620 43727721 -153467711 + B4A SINE B4 88 249 -43 3 918 2206 142 9 17 chr1 43727661 43728082 -153467350 + RMER6A LTR ERVK 339 756 0 3 918 456 215 8 8 chr1 43728082 43728188 -153467244 + RCHARR1 DNA MER1_type 824 929 -45 3 918 305 62 0 20 chr1 43729499 43729548 -153465884 + (TGGGGG)n Simple_repeat Simple_repeat 2 49 0 3 918 249 57 0 0 chr1 43729612 43729647 -153465785 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 3 918 820 128 12 24 chr1 43729653 43729821 -153465611 + CT-rich Low_complexity Low_complexity 2 167 0 3 918 770 197 0 0 chr1 43729823 43729965 -153465467 - B1_Mus2 SINE Alu 0 147 6 3 918 2807 253 118 77 chr1 43729965 43731020 -153464412 + Lx5 LINE L1 5946 7043 -7 3 918 292 208 101 28 chr1 43731198 43731307 -153464125 - L1MB8 LINE L1 -148 6030 5914 3 918 2302 194 27 18 chr1 43731340 43731853 -153463579 - L1_Rod LINE L1 -626 5221 4704 3 918 405 300 53 88 chr1 43731878 43732163 -153463269 - L1M4 LINE L1 -917 5229 4955 3 918 407 288 52 13 chr1 43732348 43732503 -153462929 - L1M4 LINE L1 -1424 4722 4562 3 918 921 94 0 0 chr1 43732856 43732994 -153462438 + (TG)n Simple_repeat Simple_repeat 2 139 0 3 918 382 273 46 63 chr1 43733078 43733322 -153462110 - L1M4 LINE L1 -1613 4527 4276 3 918 407 264 133 49 chr1 43733325 43733442 -153461990 - L1M4 LINE L1 -2096 4050 3938 3 918 1468 53 16 11 chr1 43733442 43733631 -153461801 - B2_Mm2 SINE B2 -4 191 2 3 918 407 276 172 44 chr1 43733631 43733910 -153461522 - L1M4 LINE L1 -2209 3937 3584 3 918 404 299 78 56 chr1 43734026 43734351 -153461081 - L1M4 LINE L1 -3311 2835 2492 3 918 1049 216 20 0 chr1 43734351 43734555 -153460877 - B3 SINE B2 -8 208 1 3 918 404 299 78 56 chr1 43734555 43734728 -153460704 - L1M4 LINE L1 -3655 2491 2326 3 918 3276 52 2 0 chr1 43734728 43735132 -153460300 - L1Md_F2 LINE L1 -1 6581 6177 3 918 725 153 7 0 chr1 43736089 43736226 -153459206 + Lx9 LINE L1 7506 7643 -1 3 918 602 326 78 50 chr1 43736504 43737085 -153458347 - L1M2 LINE L1 -2972 3171 2575 3 918 829 157 29 0 chr1 43737099 43737239 -153458193 + B1_Mur4 SINE Alu 1 144 -6 3 918 257 255 176 3 chr1 43737962 43738085 -153457347 - L1_Rod LINE L1 -3611 2236 2074 3 918 1222 182 11 74 chr1 43738184 43738464 -153456968 - RMER6B LTR ERVK 0 461 200 3 918 1788 106 86 0 chr1 43738464 43738765 -153456667 + IAPEY3_LTR LTR ERVK 1 327 -5 3 918 1399 75 25 0 chr1 43738768 43738968 -153456464 - RMER6B LTR ERVK -256 205 1 3 918 4443 136 22 21 chr1 43738972 43739695 -153455737 - MYSERV6-int LTR ERVK -1197 7762 7039 3 918 362 252 26 97 chr1 43740594 43740748 -153454684 + RLTR23 LTR ERV1 288 430 0 3 918 3087 127 78 26 chr1 43740753 43741295 -153454137 - MYSERV6-int LTR ERVK -1915 7044 6475 3 918 279 0 0 0 chr1 43741295 43741326 -153454106 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 918 681 13 0 0 chr1 43741326 43741403 -153454029 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 918 397 0 0 0 chr1 43741403 43741450 -153453982 - MYSERV6-int LTR ERVK -8578 381 335 3 918 486 132 22 4 chr1 43741505 43741603 -153453829 - ORR1C1 LTR MaLR -286 98 3 3 918 1512 78 10 0 chr1 43742169 43742362 -153453070 - B2_Mm2 SINE B2 0 195 1 3 918 1520 211 44 17 chr1 43743589 43743951 -153451481 + ORR1D1 LTR MaLR 3 374 0 3 918 328 257 26 85 chr1 43744157 43744310 -153451122 - L1MA9 LINE L1 -1 6311 6168 3 918 1903 123 169 3 chr1 43744323 43744691 -153450741 - RLTR44B LTR ERVK 0 449 21 3 918 6702 54 28 4 chr1 43744692 43745539 -153449893 - RLTR44-int LTR ERVK 0 2812 1896 3 918 5412 191 124 25 chr1 43745622 43747144 -153448288 - RLTR44-int LTR ERVK -1322 1490 1 3 918 1787 129 164 0 chr1 43747158 43747279 -153448153 - RLTR44B LTR ERVK -16 433 311 3 918 1032 8 0 0 chr1 43747279 43747396 -153448036 + (TTC)n Simple_repeat Simple_repeat 2 118 0 3 918 1787 129 164 0 chr1 43747396 43747646 -153447786 - RLTR44B LTR ERVK -139 310 2 3 918 1121 286 53 0 chr1 43747685 43748073 -153447359 - L1MA9 LINE L1 -222 6090 5648 3 918 416 193 24 12 chr1 43749034 43749118 -153446314 - PB1D10 SINE Alu -27 90 6 3 918 183 100 0 0 chr1 43749222 43749252 -153446180 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 918 231 307 78 28 chr1 43749875 43750016 -153445416 + MIRb SINE MIR 20 167 -101 3 918 401 169 12 0 chr1 43750532 43750615 -153444817 + CT-rich Low_complexity Low_complexity 2 85 0 3 918 540 275 131 20 chr1 43750814 43751066 -153444366 - MER2 DNA MER2_type -49 296 17 3 918 228 265 11 46 chr1 43752379 43752466 -153442966 + CT-rich Low_complexity Low_complexity 3 86 0 3 918 21 36 0 0 chr1 43752678 43752706 -153442726 + AT_rich Low_complexity Low_complexity 1 28 0 3 918 768 201 53 0 chr1 43752706 43752875 -153442557 + ORR1D2 LTR MaLR 193 370 0 3 918 389 223 17 59 chr1 43752875 43752994 -153442438 + ORR1D2-int LTR MaLR 1 114 -1256 3 918 297 332 36 68 chr1 43753185 43753434 -153441998 - RLTR15 LTR ERVK -36 323 83 3 918 1158 68 0 7 chr1 43753451 43753599 -153441833 - B1_Mus1 SINE Alu 0 148 2 3 918 280 247 103 13 chr1 43754031 43754109 -153441323 - L1ME2z LINE L1 -484 5960 5876 3 918 672 318 137 74 chr1 43754127 43754403 -153441029 + MER44B DNA MER2_type 16 349 -201 3 918 1430 58 10 45 chr1 43754403 43754603 -153440829 + B2_Mm1t SINE B2 1 193 0 3 918 672 318 137 74 chr1 43754603 43754668 -153440764 + MER44B DNA MER2_type 350 394 -156 3 918 911 261 19 0 chr1 43754668 43754879 -153440553 + B3 SINE B2 2 216 0 3 918 672 318 137 74 chr1 43754879 43755039 -153440393 + MER44B DNA MER2_type 395 550 0 3 918 307 194 12 122 chr1 43755631 43755713 -153439719 + L1MD3 LINE L1 6305 6377 -1618 3 918 252 0 0 0 chr1 43756135 43756163 -153439269 + (T)n Simple_repeat Simple_repeat 1 28 0 3 918 1269 240 146 88 chr1 43756425 43757069 -153438363 + L1MC3 LINE L1 5461 6141 -1644 3 918 482 156 0 20 chr1 43757074 43757172 -153438260 + GA-rich Low_complexity Low_complexity 3 98 0 3 918 199 140 40 0 chr1 43757506 43757556 -153437876 + T-rich Low_complexity Low_complexity 5 56 0 3 918 744 216 12 3 chr1 43757610 43757935 -153437497 + GA-rich Low_complexity Low_complexity 1 327 0 3 918 1474 156 276 0 chr1 43757981 43758282 -153437150 + ORR1C2 LTR MaLR 1 384 0 3 918 1091 272 92 95 chr1 43758284 43758696 -153436736 + L1MC3 LINE L1 6209 6620 -1165 3 918 374 295 139 81 chr1 43758696 43758969 -153436463 - B4A SINE B4 -1 291 3 3 918 1091 272 92 95 chr1 43758969 43759106 -153436326 + L1MC3 LINE L1 6621 6760 -1025 3 918 770 196 257 23 chr1 43759106 43759409 -153436023 + ORR1D1 LTR MaLR 1 374 0 3 918 1091 272 92 95 chr1 43759409 43759512 -153435920 + L1MC3 LINE L1 6761 6860 -925 3 918 263 253 176 60 chr1 43759524 43759598 -153435834 + MTEb LTR MaLR 12 90 -289 3 918 2713 47 0 173 chr1 43759598 43760038 -153435394 - RLTR10B2 LTR ERVK -1 364 1 3 918 263 241 167 49 chr1 43760038 43760130 -153435302 + MTEb LTR MaLR 91 196 -183 3 918 238 340 49 20 chr1 43760923 43760956 -153434476 - B4A SINE B4 -15 277 245 3 918 4396 29 8 4 chr1 43760956 43761474 -153433958 - L1Md_F2 LINE L1 -1 6581 6062 3 918 238 340 49 20 chr1 43761474 43761542 -153433890 - B4A SINE B4 -48 244 173 3 918 1432 289 80 50 chr1 43761715 43762249 -153433183 + Lx8 LINE L1 6722 7286 -187 3 918 2683 166 20 144 chr1 43762249 43762945 -153432487 - RMER19C LTR ERVK -1 610 1 3 918 1432 289 80 50 chr1 43762945 43763087 -153432345 + Lx8 LINE L1 7287 7418 -55 3 918 335 305 52 33 chr1 43763256 43763466 -153431966 + Charlie1a DNA MER1_type 960 1173 -282 3 918 597 291 21 55 chr1 43764124 43764360 -153431072 - ORR1E LTR MaLR -128 231 4 3 918 408 278 20 51 chr1 43764705 43764737 -153430695 - L1MA5 LINE L1 -1 6299 6271 3 918 270 0 0 0 chr1 43764737 43764767 -153430665 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3 918 408 278 20 51 chr1 43764767 43764931 -153430501 - L1MA5 LINE L1 -30 6270 6109 3 918 1491 265 87 7 chr1 43764925 43765350 -153430082 - Lx8 LINE L1 -792 6681 6223 3 918 237 67 178 0 chr1 43765379 43765424 -153430008 + MTD LTR MaLR 351 403 -16 3 918 508 160 19 9 chr1 43765440 43765547 -153429885 + MTD-int LTR MaLR 1 108 -1150 3 918 1633 174 47 3 chr1 43767745 43768045 -153427387 + ORR1C2 LTR MaLR 12 324 -60 3 918 396 304 126 85 chr1 43768383 43768796 -153426636 - Lx8 LINE L1 0 7473 7044 3 918 771 97 81 15 chr1 43769255 43769391 -153426041 + Lx LINE L1 6510 6654 0 3 918 23 0 0 0 chr1 43769652 43769675 -153425757 + AT_rich Low_complexity Low_complexity 1 23 0 3 918 3431 28 5 0 chr1 43770785 43771179 -153424253 - MTA_Mm LTR MaLR 0 396 1 3 918 355 319 97 73 chr1 43772772 43773107 -153422325 - ORR1E LTR MaLR -5 374 10 3 918 378 0 0 0 chr1 43773795 43773837 -153421595 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 918 569 342 0 27 chr1 43773926 43774151 -153421281 + ID_B1 SINE B4 1 219 -5 3 918 558 281 15 7 chr1 43774188 43774324 -153421108 + RSINE1 SINE B4 19 155 -10 3 918 325 293 59 70 chr1 43775255 43775442 -153419990 - MER58A DNA MER1_type 0 224 40 3 918 359 229 106 35 chr1 43776067 43776180 -153419252 + L1MD LINE L1 5600 5720 -2275 3 918 249 276 81 10 chr1 43776260 43776359 -153419073 + L1MB5 LINE L1 5842 5947 -227 3 918 3369 62 2 2 chr1 43777082 43777502 -153417930 - L1_Mus1 LINE L1 -1 6566 6147 3 919 720 311 72 59 chr1 43778288 43778677 -153416755 + Tigger7 DNA MER2_type 26 419 -2072 3 919 416 328 77 11 chr1 43780207 43780389 -153415043 + MLT1H1 LTR MaLR 316 509 -46 3 919 732 293 4 0 chr1 43780647 43780876 -153414556 - MLT1A0 LTR MaLR 0 365 136 3 919 22 0 0 0 chr1 43781003 43781025 -153414407 + AT_rich Low_complexity Low_complexity 1 22 0 3 919 1014 171 0 0 chr1 43781122 43781300 -153414132 - ORR1A4 LTR MaLR 0 367 154 3 919 342 45 0 0 chr1 43781300 43781344 -153414088 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 919 844 227 24 10 chr1 43781344 43781370 -153414062 - ORR1A4 LTR MaLR -180 187 160 3 919 447 246 62 0 chr1 43781360 43781490 -153413942 - MTD LTR MaLR -56 363 226 4 919 7750 181 35 59 chr1 43781508 43783319 -153412113 - RMER3D-int LTR ERVK -62 2780 1014 4 919 450 157 11 63 chr1 43783389 43783484 -153411948 - RMER3D-int LTR ERVK -1731 1111 1022 4 919 686 145 42 8 chr1 43783519 43783637 -153411795 - RMER3D-int LTR ERVK -2232 610 489 4 919 7051 62 17 10 chr1 43783804 43784890 -153410542 - MusHAL1 LINE L1 -1740 1613 540 4 919 1190 61 0 0 chr1 43784890 43785037 -153410395 - B1_Mus2 SINE Alu 0 147 1 4 919 4749 79 3 85 chr1 43785037 43785538 -153409894 - MusHAL1 LINE L1 -2815 539 72 4 919 828 255 38 9 chr1 43785562 43785772 -153409660 - B3 SINE B2 0 216 1 4 919 780 194 102 30 chr1 43789036 43789233 -153406199 - B3 SINE B2 -5 211 1 4 919 542 225 45 23 chr1 43790116 43790248 -153405184 - ORR1D2 LTR MaLR -2 368 234 4 919 1457 12 0 6 chr1 43790373 43790545 -153404887 - L1Md_A LINE L1 0 6582 6412 4 919 280 246 31 0 chr1 43790805 43790870 -153404562 - BLACKJACK DNA AcHobo 0 2944 2878 4 919 183 162 0 0 chr1 43791115 43791152 -153404280 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 919 234 226 97 0 chr1 43791308 43791370 -153404062 - tRNA-Ala-GCY_ tRNA tRNA -5 70 3 4 919 24 0 0 0 chr1 43791399 43791423 -153404009 + AT_rich Low_complexity Low_complexity 1 24 0 4 919 2146 169 21 19 chr1 43791583 43791956 -153403476 + ORR1D1 LTR MaLR 1 374 0 4 919 958 263 90 45 chr1 43792187 43792541 -153402891 + MTD LTR MaLR 50 419 0 4 919 569 234 140 11 chr1 43792547 43792673 -153402759 - L1MA4A LINE L1 -414 5889 5740 4 919 360 0 0 0 chr1 43792673 43792713 -153402719 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 919 569 234 140 11 chr1 43792713 43792772 -153402660 - L1MA4A LINE L1 -564 5739 5681 4 919 860 300 22 7 chr1 43792785 43793054 -153402378 + L1MA5 LINE L1 5388 5660 -640 4 919 205 88 29 0 chr1 43794512 43794546 -153400886 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 919 385 316 57 6 chr1 43794858 43795017 -153400415 + L1MA5 LINE L1 6069 6235 -65 4 919 963 224 34 14 chr1 43795096 43795304 -153400128 + B3 SINE B2 1 212 -4 4 919 33 25 0 0 chr1 43795845 43795885 -153399547 + AT_rich Low_complexity Low_complexity 1 40 0 4 919 454 212 204 0 chr1 43795889 43796002 -153399430 - ID_B1 SINE B4 -3 221 86 4 919 292 313 92 0 chr1 43797940 43798071 -153397361 - Tigger5 DNA MER2_type -2204 202 60 4 919 331 235 70 0 chr1 43800298 43800402 -153395030 + B1F SINE Alu 1 120 0 4 919 429 282 101 6 chr1 43800410 43800588 -153394844 - L1MB3 LINE L1 -44 6139 5945 4 919 389 226 88 3 chr1 43800829 43800974 -153394458 - L1MA4 LINE L1 -365 5932 5779 4 919 1634 193 31 22 chr1 43801086 43801125 -153394307 - ORR1D1 LTR MaLR 0 374 340 4 919 2286 134 51 10 chr1 43801125 43801516 -153393916 + MTB_Mm LTR MaLR 1 407 0 4 919 1634 193 31 22 chr1 43801516 43801654 -153393778 - ORR1D1 LTR MaLR -35 339 198 4 919 216 0 0 0 chr1 43801654 43801678 -153393754 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 919 459 0 0 0 chr1 43801678 43801728 -153393704 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 919 1634 193 31 22 chr1 43801728 43801903 -153393529 - ORR1D1 LTR MaLR -177 197 18 4 919 555 270 43 104 chr1 43801901 43802112 -153393320 - B4A SINE B4 -93 199 2 4 919 1767 256 72 24 chr1 43802165 43802793 -153392639 - RLTR40 LTR ERVK -72 745 88 4 919 334 229 62 159 chr1 43802840 43802985 -153392447 + MTEb LTR MaLR 215 361 -18 4 919 261 83 28 0 chr1 43803428 43803464 -153391968 - Ricksha_c DNA MuDR -1145 903 867 4 919 974 131 57 0 chr1 43803763 43803939 -153391493 - ORR1B1 LTR MaLR 0 394 209 4 919 584 296 32 16 chr1 43804656 43804845 -153390587 - MLT1A0 LTR MaLR -12 353 162 4 919 22 0 0 0 chr1 43806994 43807016 -153388416 + AT_rich Low_complexity Low_complexity 1 22 0 4 919 327 268 26 9 chr1 43807750 43807863 -153387569 + L1MA10 LINE L1 6196 6310 -24 4 919 710 218 192 8 chr1 43807853 43808173 -153387259 + L1M2 LINE L1 5084 5464 -836 4 919 451 233 205 47 chr1 43808515 43808686 -153386746 + B3A SINE B2 1 198 0 4 919 485 160 116 16 chr1 43809330 43809451 -153385981 - URR1A DNA MER1_type -18 208 76 4 919 572 218 33 71 chr1 43809790 43809973 -153385459 + MTEa LTR MaLR 204 379 0 4 919 926 256 150 29 chr1 43810059 43810373 -153385059 + MTD LTR MaLR 53 404 -15 4 919 224 95 0 67 chr1 43810676 43810721 -153384711 + A-rich Low_complexity Low_complexity 1 42 0 4 919 1301 74 6 17 chr1 43812219 43812378 -153383054 + B2_Mm2 SINE B2 1 158 -37 4 919 351 0 0 0 chr1 43812378 43812417 -153383015 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 919 1301 74 6 17 chr1 43812417 43812435 -153382997 + B2_Mm2 SINE B2 159 176 -19 4 919 229 271 0 33 chr1 43813188 43813249 -153382183 - ID SINE ID -143 81 23 4 919 198 0 0 0 chr1 43816341 43816363 -153379069 + (T)n Simple_repeat Simple_repeat 1 22 0 4 919 980 75 0 0 chr1 43816363 43816496 -153378936 - B1_Mm SINE Alu 0 147 15 4 919 1676 227 82 81 chr1 43817562 43818218 -153377214 + Lx9 LINE L1 6973 7629 -15 4 919 284 272 67 42 chr1 43818858 43818977 -153376455 - MER5B DNA MER1_type -49 129 8 4 919 516 277 42 18 chr1 43819776 43819993 -153375439 + MER31A LTR ERV1 149 370 -115 4 919 487 252 24 0 chr1 43820546 43820673 -153374759 - MER2 DNA MER2_type -1 344 215 4 919 197 238 189 54 chr1 43820902 43821013 -153374419 - L2a LINE L2 -3 3423 3298 4 919 306 248 158 9 chr1 43822190 43822304 -153373128 + Tigger7 DNA MER2_type 475 605 -1886 4 919 282 89 386 30 chr1 43823589 43823690 -153371742 - B2_Mm2 SINE B2 -1 194 58 4 919 1080 80 0 0 chr1 43823698 43823849 -153371583 - B2_Mm2 SINE B2 -43 152 2 4 919 341 231 9 28 chr1 43823874 43823981 -153371451 + Lx7 LINE L1 7305 7409 -287 4 919 309 160 20 0 chr1 43823983 43824033 -153371399 - HAL1-3A_ME LINE L1 -833 2025 1975 4 919 380 240 0 8 chr1 43824033 43824155 -153371277 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 919 484 178 101 8 chr1 43824210 43824329 -153371103 + Lx7 LINE L1 7563 7692 -4 4 919 775 261 129 14 chr1 43825030 43825317 -153370115 + MER44A DNA MER2_type 20 339 0 4 919 2095 136 6 3 chr1 43826400 43826725 -153368707 + ORR1A3 LTR MaLR 1 326 0 4 919 4561 85 64 25 chr1 43828747 43829467 -153365965 + RMER17A LTR ERVK 1 748 -3 4 919 672 269 10 48 chr1 43830160 43830367 -153365065 + B4 SINE B4 10 208 -84 4 919 409 301 52 0 chr1 43830500 43830636 -153364796 + ID_B1 SINE B4 81 223 -1 4 919 1323 241 85 43 chr1 43832062 43832642 -153362790 - Lx7 LINE L1 0 7696 7002 4 919 203 179 0 0 chr1 43833533 43833572 -153361860 + T-rich Low_complexity Low_complexity 1 39 0 4 919 252 235 119 30 chr1 43833574 43833675 -153361757 - L1MD2 LINE L1 0 6359 6250 4 919 1086 173 55 4 chr1 43833734 43833997 -153361435 + MTC LTR MaLR 103 400 0 4 919 403 288 82 0 chr1 43834045 43834191 -153361241 + MLT2B1 LTR ERVL 406 563 -4 4 919 709 340 106 34 chr1 43836260 43836705 -153358727 + Tigger7 DNA MER2_type 55 531 -1960 4 919 205 176 0 0 chr1 43836866 43836900 -153358532 + A-rich Low_complexity Low_complexity 2 35 0 4 919 416 249 340 0 chr1 43837185 43837450 -153357982 - RCHARR1 DNA MER1_type -90 884 530 4 919 219 264 14 0 chr1 43837450 43837522 -153357910 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 919 488 234 15 61 chr1 43837675 43837807 -153357625 - RCHARR1 DNA MER1_type -725 249 124 4 919 180 0 0 0 chr1 43837836 43837856 -153357576 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 4 919 228 265 81 35 chr1 43837856 43837868 -153357564 - PB1D10 SINE Alu -15 102 13 4 919 262 236 40 27 chr1 43837868 43837942 -153357490 - ID_B1 SINE B4 -56 168 94 4 919 253 222 63 0 chr1 43839713 43839774 -153355658 + MER2 DNA MER2_type 268 332 -13 4 919 2078 188 7 19 chr1 43839774 43840191 -153355241 - MTD LTR MaLR 0 419 8 4 919 404 262 202 25 chr1 43841543 43841786 -153353646 - B4A SINE B4 -6 286 1 4 919 239 196 0 0 chr1 43841892 43841938 -153353494 - L1MC LINE L1 -3445 2701 2656 4 919 346 254 14 65 chr1 43844478 43844596 -153350836 - PB1D10 SINE Alu -1 119 3 4 919 245 256 11 65 chr1 43844818 43844910 -153350522 + RMER10A LTR ERVL 18 104 -338 4 919 639 98 0 0 chr1 43845010 43845102 -153350330 + (TC)n Simple_repeat Simple_repeat 2 93 0 4 919 405 0 0 0 chr1 43845103 43845148 -153350284 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 919 1038 89 7 0 chr1 43845511 43845657 -153349775 + B1_Mus1 SINE Alu 2 148 0 4 919 252 278 79 106 chr1 43845788 43845977 -153349455 - MLT1B LTR MaLR -52 338 155 4 919 1211 152 103 0 chr1 43846448 43846652 -153348780 - URR1B DNA MER1_type 0 225 1 4 919 672 265 221 45 chr1 43846836 43847144 -153348288 - MLT1A0 LTR MaLR 0 365 4 4 919 313 306 180 35 chr1 43847795 43847995 -153347437 + MER2 DNA MER2_type 8 236 -109 4 919 297 230 14 0 chr1 43848564 43848638 -153346794 + PB1D10 SINE Alu 22 96 -21 4 919 515 117 26 18 chr1 43848647 43848760 -153346672 + (AGGTG)n Simple_repeat Simple_repeat 4 117 0 4 919 204 162 0 0 chr1 43849472 43849553 -153345879 + (TAG)n Simple_repeat Simple_repeat 1 81 0 4 919 246 299 30 0 chr1 43849680 43849747 -153345685 - tRNA-Ala-GCY_ tRNA tRNA -3 72 4 4 919 346 225 179 12 chr1 43849799 43849922 -153345510 - B1F SINE Alu -119 192 9 4 919 22 0 0 0 chr1 43850299 43850321 -153345111 + AT_rich Low_complexity Low_complexity 1 22 0 4 919 826 216 145 32 chr1 43851191 43851334 -153344098 + L1MB4 LINE L1 4545 4695 -1451 4 919 519 17 0 0 chr1 43851334 43851394 -153344038 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 919 826 216 145 32 chr1 43851394 43851532 -153343900 + L1MB4 LINE L1 4696 4858 -1288 4 919 203 259 17 17 chr1 43851827 43851886 -153343546 + CT-rich Low_complexity Low_complexity 5 63 0 4 919 416 212 100 21 chr1 43852012 43852152 -153343280 + L1MB4 LINE L1 5001 5151 -995 4 919 297 201 77 77 chr1 43852872 43853028 -153342404 + L1MB4 LINE L1 5159 5314 -832 4 919 259 223 142 0 chr1 43853064 43853144 -153342288 + L1MB4 LINE L1 5818 5906 -274 4 919 189 0 0 0 chr1 43853225 43853246 -153342186 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 919 844 238 71 56 chr1 43853598 43853943 -153341489 + L1MB5 LINE L1 5690 6035 -149 5 919 274 192 87 39 chr1 43854422 43854525 -153340907 + PB1D7 SINE Alu 6 113 -7 5 919 375 23 0 0 chr1 43854592 43854636 -153340796 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 919 588 50 0 0 chr1 43854653 43854733 -153340699 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 919 249 317 0 12 chr1 43855833 43855916 -153339516 - ID SINE ID -141 83 2 5 919 1082 178 80 24 chr1 43857755 43857968 -153337464 - URR1B DNA MER1_type 0 225 1 5 919 2643 236 164 47 chr1 43858282 43859396 -153336036 + L1_Mur3 LINE L1 3716 4960 -920 5 919 4396 229 60 77 chr1 43859396 43861010 -153334422 + ORR1D2-int LTR MaLR 1 1562 -18 5 919 528 302 63 5 chr1 43861018 43861208 -153334224 + Lx8 LINE L1 6832 7032 -441 5 919 293 118 0 19 chr1 43861211 43861263 -153334169 + (GGA)n Simple_repeat Simple_repeat 1 51 0 5 919 385 317 25 0 chr1 43861263 43861424 -153334008 + Lx8 LINE L1 6988 7152 -321 5 919 338 309 51 7 chr1 43861853 43861990 -153333442 + B1F SINE Alu 3 145 -4 5 919 22 35 0 0 chr1 43863251 43863280 -153332152 + AT_rich Low_complexity Low_complexity 1 29 0 5 919 1044 97 0 0 chr1 43865017 43865156 -153330276 + B1_Mus1 SINE Alu 1 139 -9 5 919 226 0 29 29 chr1 43865156 43865191 -153330241 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 919 211 136 0 22 chr1 43865382 43865427 -153330005 + T-rich Low_complexity Low_complexity 3 46 0 5 919 443 164 210 16 chr1 43865428 43865552 -153329880 - B1_Mur1 SINE Alu -1 148 1 5 919 372 315 46 0 chr1 43865559 43865667 -153329765 - PB1D7 SINE Alu -1 119 7 5 919 1360 57 45 0 chr1 43865923 43866099 -153329333 + B2_Mm1t SINE B2 1 184 -9 5 919 1754 158 98 22 chr1 43866306 43866663 -153328769 - ORR1C2 LTR MaLR 0 384 1 5 919 792 167 73 88 chr1 43866663 43866867 -153328565 - ORR1D1 LTR MaLR -46 328 128 5 919 342 155 168 47 chr1 43866880 43867029 -153328403 + L1M3 LINE L1 4366 4532 -1608 5 919 343 253 83 13 chr1 43867028 43867184 -153328248 - L1M2 LINE L1 -1797 4346 4180 5 919 893 279 136 0 chr1 43868623 43868931 -153326501 - ORR1D2 LTR MaLR -8 362 13 5 919 289 289 0 57 chr1 43869274 43869362 -153326070 + MTE2a LTR MaLR 60 142 -237 5 919 825 300 93 30 chr1 43869293 43869657 -153325775 + MT2A LTR ERVL 75 461 -72 5 919 1074 75 7 13 chr1 43870159 43870308 -153325124 + B1_Mus1 SINE Alu 1 148 0 5 919 421 291 97 0 chr1 43870761 43870895 -153324537 + B1F SINE Alu 1 147 -2 5 919 22 0 0 0 chr1 43871461 43871483 -153323949 + GC_rich Low_complexity Low_complexity 1 22 0 5 919 198 0 0 0 chr1 43871732 43871754 -153323678 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 5 919 695 202 224 0 chr1 43872100 43872283 -153323149 + URR1B DNA MER1_type 2 225 0 5 919 351 0 0 0 chr1 43872329 43872368 -153323064 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 919 21 36 0 0 chr1 43872667 43872695 -153322737 + AT_rich Low_complexity Low_complexity 1 28 0 5 919 1117 68 0 7 chr1 43873112 43873260 -153322172 + B1_Mm SINE Alu 1 147 0 5 919 211 132 26 0 chr1 43873275 43873313 -153322119 + A-rich Low_complexity Low_complexity 2 40 0 5 919 407 262 229 4 chr1 43873341 43873621 -153321811 - MER2 DNA MER2_type -1 344 2 5 919 359 261 189 41 chr1 43873873 43874117 -153321315 + B4 SINE B4 2 281 -11 5 919 746 301 47 24 chr1 43874239 43874687 -153320745 + L1MB2 LINE L1 5676 6128 -43 5 919 241 245 0 0 chr1 43874858 43874911 -153320521 + MIR SINE MIR 93 145 -117 5 919 459 312 136 4 chr1 43876124 43876381 -153319051 - MLT1A0 LTR MaLR -6 359 69 5 919 236 309 10 41 chr1 43876931 43877029 -153318403 - MER21B LTR ERV1 -768 95 1 5 919 1432 178 156 18 chr1 43877207 43877534 -153317898 - ORR1D1 LTR MaLR 0 374 3 5 919 1262 47 0 0 chr1 43878256 43878404 -153317028 + B1_Mus1 SINE Alu 1 148 0 5 919 220 219 0 0 chr1 43879114 43879155 -153316277 - ID4_ SINE ID -41 42 2 5 919 363 60 0 0 chr1 43879305 43879355 -153316077 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 919 485 245 20 0 chr1 43880847 43880949 -153314483 + Lx8 LINE L1 6365 6468 -1005 5 919 999 65 0 7 chr1 43880958 43881097 -153314335 + B1_Mus1 SINE Alu 11 148 0 5 919 180 0 0 0 chr1 43881097 43881117 -153314315 + (A)n Simple_repeat Simple_repeat 1 20 0 5 919 1025 265 116 35 chr1 43881127 43881498 -153313934 + Lx8 LINE L1 6455 6855 -618 5 919 1213 62 28 17 chr1 43881499 43881679 -153313753 + B2_Mm2 SINE B2 14 195 0 5 919 516 279 134 24 chr1 43881684 43881893 -153313539 + Lx8 LINE L1 6894 7125 -348 5 919 240 194 287 15 chr1 43881891 43882027 -153313405 + Lx8 LINE L1 7300 7472 -1 5 919 188 306 184 0 chr1 43882334 43882432 -153313000 + L2b LINE L2 3033 3148 -227 5 919 251 229 214 27 chr1 43882662 43882774 -153312658 + MER5A DNA MER1_type 57 189 0 5 919 360 0 0 0 chr1 43883383 43883423 -153312009 + (CTG)n Simple_repeat Simple_repeat 1 40 0 5 919 588 14 0 0 chr1 43883423 43883492 -153311940 + (TCC)n Simple_repeat Simple_repeat 2 70 0 5 919 358 258 41 0 chr1 43885925 43886022 -153309410 - MER91B DNA Tip100 -8 182 82 5 919 291 28 0 0 chr1 43886607 43886643 -153308789 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 919 229 345 70 9 chr1 43887164 43887278 -153308154 + Lx8 LINE L1 6878 6998 -475 5 919 612 240 95 77 chr1 43887875 43888302 -153307130 + L1_Mur3 LINE L1 1533 1987 -3893 5 919 350 246 126 60 chr1 43888316 43888338 -153307094 + ID_B1 SINE B4 64 224 0 5 919 587 174 21 27 chr1 43888338 43888467 -153306965 + B1F2 SINE Alu 9 150 0 5 919 1823 284 80 109 chr1 43888494 43890731 -153304701 + L1_Mur3 LINE L1 2046 4217 -1663 5 919 557 217 7 35 chr1 43890731 43890743 -153304689 + ID_B1 SINE B4 83 218 -3 5 919 989 70 0 0 chr1 43890743 43890871 -153304561 + B1_Mus1 SINE Alu 15 142 -6 5 919 189 0 0 0 chr1 43890874 43890895 -153304537 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 919 724 249 91 39 chr1 43890896 43891226 -153304206 + L1_Mur3 LINE L1 4215 4561 -1319 5 919 237 135 0 0 chr1 43891376 43891428 -153304004 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 919 702 281 33 57 chr1 43891448 43891659 -153303773 + B4 SINE B4 86 291 -1 5 919 1014 261 52 52 chr1 43891661 43892061 -153303371 + L1MB3 LINE L1 5784 6183 0 5 919 234 0 0 0 chr1 43892558 43892584 -153302848 + (T)n Simple_repeat Simple_repeat 1 26 0 5 919 787 216 91 0 chr1 43893354 43893530 -153301902 - B3A SINE B2 -6 192 1 5 919 1113 57 43 0 chr1 43893569 43893710 -153301722 + B1_Mus2 SINE Alu 1 147 0 5 919 1736 248 30 12 chr1 43894048 43894448 -153300984 - MTD LTR MaLR 0 419 13 5 919 342 222 68 12 chr1 43894569 43894681 -153300751 + LTR48 LTR ERV1 691 785 -2 5 919 1397 301 91 58 chr1 43894683 43894883 -153300549 + Cheshire DNA MER1_type 1400 1571 -849 5 919 1276 67 39 11 chr1 43894883 43895063 -153300369 - B2_Mm2 SINE B2 -9 186 2 5 919 1397 301 91 58 chr1 43895063 43895565 -153299867 + Cheshire DNA MER1_type 1572 2125 -295 5 919 771 222 7 0 chr1 43895620 43895764 -153299668 + B1_Mur4 SINE Alu 1 145 -5 5 919 583 271 64 6 chr1 43895794 43895950 -153299482 + RSINE1 SINE B4 1 165 0 5 919 507 56 0 0 chr1 43895951 43896022 -153299410 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 5 919 334 312 160 23 chr1 43896435 43896566 -153298866 - RSINE1 SINE B4 -14 151 3 5 919 234 191 0 0 chr1 43896588 43896630 -153298802 + Kanga2_a DNA Tc2 768 809 -79 5 919 656 298 52 12 chr1 43897472 43897723 -153297709 - MER2 DNA MER2_type 0 345 85 5 919 256 304 33 0 chr1 43897736 43897828 -153297604 + CT-rich Low_complexity Low_complexity 1 95 0 5 919 365 330 19 0 chr1 43897845 43897948 -153297484 - PB1D10 SINE Alu -10 107 3 5 919 1637 26 0 20 chr1 43898622 43898818 -153296614 - B2_Mm1a SINE B2 -1 192 1 5 919 86 47 0 0 chr1 43899968 43900096 -153295336 + AT_rich Low_complexity Low_complexity 1 128 0 5 919 1903 143 109 9 chr1 43901096 43901427 -153294005 + ORR1B2 LTR MaLR 1 364 -3 5 919 498 266 0 0 chr1 43901540 43901649 -153293783 - PB1D10 SINE Alu -6 111 3 5 919 519 351 108 28 chr1 43901736 43902135 -153293297 + Tigger15a DNA TcMar 197 627 -88 5 919 322 287 73 16 chr1 43902170 43902294 -153293138 + Tigger15a DNA TcMar 575 705 -10 5 919 580 303 194 32 chr1 43902389 43902699 -153292733 - Tigger7 DNA MER2_type 0 2491 2132 5 919 393 349 59 0 chr1 43902700 43902852 -153292580 - Tigger7 DNA MER2_type -2186 305 145 5 919 350 292 11 115 chr1 43903335 43903406 -153292026 - RSINE1 SINE B4 0 165 104 5 919 1111 158 22 0 chr1 43903406 43903590 -153291842 - B2_Mm2 SINE B2 -7 188 1 5 919 350 292 11 115 chr1 43903590 43903700 -153291732 - RSINE1 SINE B4 -62 103 3 5 919 623 324 64 19 chr1 43903895 43904159 -153291273 + MLT1A0 LTR MaLR 1 276 -89 5 919 2783 36 3 0 chr1 43904462 43904797 -153290635 - L1Md_T LINE L1 -2 6580 6245 5 919 2759 13 0 3 chr1 43904822 43905140 -153290292 - L1Md_A LINE L1 0 6582 6266 5 919 7425 17 0 0 chr1 43905140 43906013 -153289419 + MERVL-int LTR ERVL 1863 2735 -2750 5 114 39188 10 0 6 chr1 43906030 43912109 -153283323 - L1Md_A LINE L1 -320 6262 227 5 920 1389 67 0 11 chr1 43912111 43912291 -153283141 - B2_Mm2 SINE B2 -17 178 1 5 920 483 252 0 0 chr1 43912815 43912934 -153282498 - PB1D10 SINE Alu 0 117 6 5 920 34 24 0 0 chr1 43913021 43913062 -153282370 + AT_rich Low_complexity Low_complexity 1 41 0 5 920 1654 178 84 5 chr1 43913449 43913836 -153281596 + BGLII_B LTR ERVK 1 441 0 5 920 186 43 0 0 chr1 43914297 43914320 -153281112 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 920 236 188 86 148 chr1 43915862 43915943 -153279489 + MLT1H2 LTR MaLR 228 303 -186 5 920 462 165 0 0 chr1 43916199 43916302 -153279130 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 920 669 249 21 58 chr1 43916327 43916415 -153279017 - B4A SINE B4 -111 181 100 5 920 1522 179 79 33 chr1 43916415 43916616 -153278816 + RMER17C LTR ERVK 1 218 -192 6 920 396 0 0 0 chr1 43916616 43916660 -153278772 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 920 1522 179 79 33 chr1 43916660 43916850 -153278582 + RMER17C LTR ERVK 219 410 0 6 920 669 249 21 58 chr1 43916850 43916949 -153278483 - B4A SINE B4 -193 99 1 5 920 1007 187 137 0 chr1 43917102 43917321 -153278111 - MTC LTR MaLR -172 249 1 6 920 1220 82 7 22 chr1 43917386 43917579 -153277853 - B2_Mm1a SINE B2 -9 186 2 6 920 234 0 0 0 chr1 43918011 43918037 -153277395 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 920 547 165 56 37 chr1 43918037 43918144 -153277288 + RMER10B LTR ERVL 239 347 -51 6 920 27 29 0 0 chr1 43918216 43918250 -153277182 + AT_rich Low_complexity Low_complexity 1 34 0 6 920 246 297 73 42 chr1 43918364 43918529 -153276903 + L1MEc LINE L1 1507 1676 -4739 6 920 437 262 144 108 chr1 43918605 43918686 -153276746 + L1MEc LINE L1 1748 1835 -4565 6 920 318 26 0 0 chr1 43918686 43918725 -153276707 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 920 437 262 144 108 chr1 43918725 43918961 -153276471 + L1MEc LINE L1 1836 2097 -4303 6 920 3259 76 0 0 chr1 43918961 43919381 -153276051 + Lx3_Mus LINE L1 6590 7009 0 6 920 437 262 144 108 chr1 43919381 43919443 -153275989 + L1MEc LINE L1 2098 2141 -4259 6 920 1581 178 6 98 chr1 43919828 43920153 -153275279 + ORR1B1 LTR MaLR 41 335 -59 6 920 369 231 37 30 chr1 43920153 43920287 -153275145 + L1MA4 LINE L1 5793 5927 -373 6 920 2630 102 25 37 chr1 43920383 43920865 -153274567 + MT2B2 LTR ERVL 1 565 -19 6 920 24 0 0 0 chr1 43921411 43921435 -153273997 + AT_rich Low_complexity Low_complexity 1 24 0 6 920 422 252 92 74 chr1 43921474 43921637 -153273795 - RMER12 LTR ERVK 0 1322 1157 6 920 651 209 56 123 chr1 43921745 43922054 -153273378 - RMER12 LTR ERVK -194 1128 645 6 920 4721 137 43 57 chr1 43922097 43922680 -153272752 - RMER12 LTR ERVK -420 902 321 6 920 4145 76 48 7 chr1 43922680 43923247 -153272185 + L1_Mus1 LINE L1 5975 6564 -3 6 920 4721 137 43 57 chr1 43923247 43923578 -153271854 - RMER12 LTR ERVK -1002 320 1 6 920 322 300 9 48 chr1 43923796 43923901 -153271531 - RSINE1 SINE B4 -62 103 3 6 920 333 0 0 0 chr1 43924001 43924038 -153271394 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 6 920 386 281 50 151 chr1 43924223 43924304 -153271128 + MER20 DNA MER1_type 1 60 -159 6 920 521 300 87 30 chr1 43924304 43924569 -153270863 - B4A SINE B4 -12 280 1 6 920 386 281 50 151 chr1 43924569 43924726 -153270706 + MER20 DNA MER1_type 61 215 -4 6 920 324 0 0 0 chr1 43924952 43924988 -153270444 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 920 712 104 0 19 chr1 43925780 43925888 -153269544 + RMER2 LTR ERV1 462 567 0 6 920 4214 39 2 4 chr1 43926449 43926961 -153268471 + L1_Mus1 LINE L1 6057 6567 0 6 920 195 184 0 0 chr1 43926965 43927003 -153268429 + A-rich Low_complexity Low_complexity 1 38 0 6 920 390 289 12 18 chr1 43927318 43927487 -153267945 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 6 920 628 244 18 53 chr1 43927495 43927664 -153267768 - RMER30 DNA MER1_type -2 200 38 6 920 1101 95 7 0 chr1 43927671 43927818 -153267614 + B1_Mus1 SINE Alu 1 148 0 6 920 261 0 0 0 chr1 43927886 43927915 -153267517 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 920 414 0 0 0 chr1 43927915 43927960 -153267472 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 920 489 236 128 6 chr1 43929353 43929532 -153265900 - B3 SINE B2 -14 202 2 6 920 1200 68 0 0 chr1 43930127 43930274 -153265158 - B1_Mus2 SINE Alu 0 147 1 6 920 1088 227 141 24 chr1 43930432 43930766 -153264666 - ORR1D1 LTR MaLR 0 374 2 6 920 834 206 0 14 chr1 43931213 43931361 -153264071 - B1_Mus2 SINE Alu -1 146 1 6 920 27 23 0 22 chr1 43931846 43931864 -153263568 + AT_rich Low_complexity Low_complexity 1 18 0 6 920 1202 54 0 7 chr1 43931864 43932013 -153263419 - B1_Mus1 SINE Alu 0 148 1 6 920 27 23 0 22 chr1 43932013 43932039 -153263393 + AT_rich Low_complexity Low_complexity 1 26 0 6 920 319 283 63 48 chr1 43932080 43932206 -153263226 - MLT1A1 LTR MaLR -271 137 10 6 920 679 289 129 7 chr1 43932310 43932684 -153262748 + Charlie1a DNA MER1_type 455 922 -533 6 920 1246 304 56 27 chr1 43932814 43933402 -153262030 + Lx9 LINE L1 6832 7436 -208 6 920 422 65 16 0 chr1 43933435 43933497 -153261935 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 920 263 250 210 0 chr1 43933612 43933712 -153261720 + Charlie1a DNA MER1_type 1127 1247 -208 6 920 28 91 0 0 chr1 43933713 43933790 -153261642 + AT_rich Low_complexity Low_complexity 1 77 0 6 920 389 283 63 32 chr1 43933889 43934079 -153261353 + Charlie1a DNA MER1_type 1260 1455 0 6 920 276 254 45 0 chr1 43934397 43934464 -153260968 + RMER30 DNA MER1_type 18 87 -115 6 920 218 304 0 0 chr1 43934469 43934515 -153260917 + (CG)n Simple_repeat Simple_repeat 2 47 0 6 920 425 291 159 67 chr1 43936416 43936832 -153258600 + RLTR40 LTR ERVK 50 503 -314 6 920 450 0 0 0 chr1 43937019 43937069 -153258363 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 920 375 297 10 0 chr1 43937160 43937261 -153258171 + Tigger5 DNA MER2_type 30 131 -2275 6 920 527 315 73 49 chr1 43937604 43937851 -153257581 - ORR1E LTR MaLR -11 348 96 6 920 1918 242 75 84 chr1 43938995 43939978 -153255454 + RMER17B LTR ERVK 1 908 0 6 920 210 143 0 0 chr1 43940402 43940437 -153254995 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 6 920 277 226 23 87 chr1 43940574 43940812 -153254620 + RMER17D LTR ERVK 225 446 -443 6 920 207 0 0 0 chr1 43940812 43940835 -153254597 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 920 277 226 23 87 chr1 43940835 43940862 -153254570 + RMER17D LTR ERVK 447 472 -417 6 920 269 108 0 0 chr1 43940960 43940997 -153254435 + URR1B DNA MER1_type 1 37 -188 6 920 1149 192 10 5 chr1 43940997 43941201 -153254231 - URR1B DNA MER1_type 0 225 21 6 920 1363 79 16 5 chr1 43941478 43941668 -153253764 + B2_Mm1a SINE B2 2 193 0 6 920 1444 201 29 30 chr1 43943205 43943618 -153251814 - L1VL2 LINE L1 -5828 590 258 6 920 777 182 0 0 chr1 43943731 43943868 -153251564 + MTB_Mm LTR MaLR 1 137 -270 6 920 1394 149 57 59 chr1 43946684 43947012 -153248420 - L1VL2 LINE L1 -5712 623 81 6 920 2566 168 25 0 chr1 43947570 43948047 -153247385 + L1VL4 LINE L1 501 989 -5313 6 920 494 43 0 14 chr1 43948069 43948139 -153247293 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 920 6511 168 31 102 chr1 43948140 43948574 -153246858 + Lx2 LINE L1 4378 4815 -1068 6 920 1676 38 0 0 chr1 43948574 43948759 -153246673 - B2_Mm1t SINE B2 -7 186 2 6 920 6511 159 27 132 chr1 43948759 43949095 -153246337 + Lx2 LINE L1 4816 5153 -730 6 920 964 42 0 0 chr1 43949095 43949214 -153246218 + B1_Mus1 SINE Alu 30 148 0 6 920 6511 159 27 132 chr1 43949214 43949850 -153245582 + Lx2 LINE L1 5154 5796 -87 6 920 1599 68 0 0 chr1 43949850 43950042 -153245390 + B2_Mm1t SINE B2 2 193 0 6 920 1359 124 9 265 chr1 43950042 43950121 -153245311 + Lx2 LINE L1 5773 5782 -1215 6 920 808 50 227 0 chr1 43950121 43950240 -153245192 + B1_Mus2 SINE Alu 2 147 0 6 920 1359 130 12 239 chr1 43950240 43950407 -153245025 + Lx2 LINE L1 5783 5932 -1077 6 920 284 269 75 0 chr1 43950746 43950839 -153244593 - MMTV-int LTR ERVK -6874 379 280 6 920 458 343 38 60 chr1 43951933 43952252 -153243180 - RLTR25B LTR ERVK -716 312 1 6 920 243 0 0 0 chr1 43957312 43957339 -153238093 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 6 920 721 231 74 17 chr1 43960107 43960178 -153235254 + RMER1B Other Other 51 120 -946 6 920 192 40 0 0 chr1 43960178 43960203 -153235229 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 920 721 231 74 17 chr1 43960203 43960307 -153235125 + RMER1B Other Other 121 236 -830 6 920 6311 135 10 0 chr1 43960308 43961314 -153234118 - L1_Mur2 LINE L1 -1275 4602 3587 6 920 445 167 0 0 chr1 43961334 43961406 -153234026 + L1Md_A LINE L1 266 337 -6282 6 920 36914 39 0 1 chr1 43961399 43966330 -153229102 + L1Md_A LINE L1 563 5589 -297 6 920 9226 22 1 0 chr1 43966330 43967325 -153228107 + L1Md_A LINE L1 5590 6585 0 6 920 6067 100 70 21 chr1 43967329 43968324 -153227108 - MusHAL1 LINE L1 -301 2411 1368 6 920 189 154 0 0 chr1 43968369 43968408 -153227024 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 6 920 270 306 0 0 chr1 43968408 43968470 -153226962 - tRNA-Ala-GCY_ tRNA tRNA -5 70 9 6 920 869 240 58 5 chr1 43968494 43968699 -153226733 - B3 SINE B2 0 216 1 6 920 264 355 82 12 chr1 43969028 43969199 -153226233 - L2 LINE L2 -507 2912 2730 6 920 842 258 99 46 chr1 43969352 43969636 -153225796 - MER82 DNA MER2_type -153 500 202 6 920 2802 179 51 4 chr1 43969859 43970614 -153224818 + Lx5 LINE L1 6165 7008 -42 6 920 362 338 81 14 chr1 43970775 43970997 -153224435 - L2 LINE L2 -790 2629 2393 6 920 268 180 3 0 chr1 43972835 43972893 -153222539 - LTR41B LTR ERVL -709 59 1 6 920 1002 298 38 35 chr1 43972925 43973214 -153222218 + B4 SINE B4 2 291 -1 6 920 834 83 0 0 chr1 43973223 43973343 -153222089 + (CA)n Simple_repeat Simple_repeat 2 121 0 6 920 583 315 86 14 chr1 43973659 43973881 -153221551 - B4A SINE B4 -54 238 1 6 920 522 0 0 0 chr1 43974287 43974345 -153221087 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 920 237 33 0 0 chr1 43974345 43974374 -153221058 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 920 638 261 142 11 chr1 43974415 43974605 -153220827 - B3 SINE B2 0 216 2 6 920 220 276 176 52 chr1 43974933 43975082 -153220350 - MIRc SINE MIR -105 163 1 6 920 29 47 0 0 chr1 43976511 43976554 -153218878 + AT_rich Low_complexity Low_complexity 1 43 0 6 920 1074 290 120 32 chr1 43976628 43977127 -153218305 + Lx9 LINE L1 7102 7644 0 6 920 669 265 175 58 chr1 43977856 43978181 -153217251 + MLT1A0 LTR MaLR 1 363 -2 6 920 316 379 0 0 chr1 43978183 43978278 -153217154 + MLT1I LTR MaLR 44 138 -273 6 920 447 326 66 15 chr1 43978315 43978511 -153216921 + MLT1I LTR MaLR 202 407 -4 6 920 1254 158 8 64 chr1 43978710 43978960 -153216472 + ORR1A4 LTR MaLR 1 236 -93 6 920 1613 185 3 35 chr1 43979760 43980079 -153215353 + L1VL4 LINE L1 406 714 -5588 6 920 4455 60 5 0 chr1 43980073 43980637 -153214795 - L1Md_F2 LINE L1 -1003 4880 4314 6 920 5782 62 1 0 chr1 43980632 43981346 -153214086 + L1Md_F2 LINE L1 4871 5585 -298 6 920 8297 62 1 6 chr1 43981347 43982337 -153213095 + L1Md_F2 LINE L1 5587 6571 -11 6 920 22747 111 16 128 chr1 43982338 43982548 -153212884 + Lx2 LINE L1 1062 1256 -2659 6 920 1456 89 16 0 chr1 43982548 43982738 -153212694 + B2_Mm1t SINE B2 1 193 0 6 920 22747 170 35 47 chr1 43982738 43983026 -153212406 + Lx2 LINE L1 1256 1517 -4369 6 920 2876 70 9 0 chr1 43983026 43983369 -153212063 + ORR1A1 LTR MaLR 1 346 0 6 920 22747 170 35 47 chr1 43983369 43987746 -153207686 + Lx2 LINE L1 1518 5859 -27 6 920 274 0 0 68 chr1 43987746 43987790 -153207642 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 6 920 22747 112 60 42 chr1 43987790 43988258 -153207174 + Lx2 LINE L1 5860 6388 -609 6 920 1309 34 0 0 chr1 43988258 43988405 -153207027 + B1_Mus2 SINE Alu 1 147 0 6 920 7910 112 60 42 chr1 43988405 43988981 -153206451 + Lx2 LINE L1 6389 6933 -64 6 920 1557 64 16 0 chr1 43989063 43989250 -153206182 - B2_Mm2 SINE B2 -4 191 2 6 920 24 0 0 0 chr1 43989463 43989487 -153205945 + AT_rich Low_complexity Low_complexity 1 24 0 7 920 368 269 39 86 chr1 43989674 43989930 -153205502 + Charlie4a DNA MER1_type 206 449 -59 7 920 297 0 0 0 chr1 43993871 43993904 -153201528 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 920 1096 98 0 0 chr1 43994247 43994390 -153201042 - B1_Mus2 SINE Alu 0 147 5 7 920 192 77 0 0 chr1 43994700 43994726 -153200706 + (T)n Simple_repeat Simple_repeat 1 26 0 7 920 213 39 0 0 chr1 43994812 43994838 -153200594 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 920 620 307 12 30 chr1 43994929 43995097 -153200335 + RSINE1 SINE B4 1 165 0 7 920 500 291 91 24 chr1 43995135 43995343 -153200089 + L1M1 LINE L1 5373 5594 -706 7 920 1433 243 53 44 chr1 43995795 43996230 -153199202 - RCHARR1 DNA MER1_type -533 441 3 7 920 294 248 188 21 chr1 43996543 43996687 -153198745 + L2a LINE L2 3105 3272 -154 7 920 247 381 103 16 chr1 43997197 43997381 -153198051 - MLT1F2 LTR MaLR -1 547 348 7 920 234 0 0 0 chr1 43997416 43997442 -153197990 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 920 635 221 68 8 chr1 43997442 43997574 -153197858 - B1_Mur2 SINE Alu -9 140 1 7 920 517 331 100 46 chr1 43997574 43997833 -153197599 - MLT1F2 LTR MaLR -281 279 7 7 920 2007 144 67 77 chr1 43998304 43998709 -153196723 - RLTR9D LTR ERVK -2 401 1 7 920 364 251 147 35 chr1 43999002 43999200 -153196232 - Charlie13a DNA Charlie -893 621 402 7 920 180 0 0 0 chr1 43999329 43999349 -153196083 + (T)n Simple_repeat Simple_repeat 1 20 0 7 920 1107 84 28 0 chr1 43999349 43999492 -153195940 - B1_Mus2 SINE Alu 0 147 1 7 920 21 36 0 0 chr1 43999546 43999574 -153195858 + AT_rich Low_complexity Low_complexity 1 28 0 7 920 253 288 139 65 chr1 43999643 43999873 -153195559 - L1M5 LINE L1 -580 5864 5618 7 920 284 337 35 16 chr1 43999874 43999920 -153195512 - PB1D10 SINE Alu -12 137 6 7 920 306 268 0 27 chr1 43999920 43999993 -153195439 - ID_B1 SINE B4 -67 157 87 7 920 1094 85 0 0 chr1 44000236 44000377 -153195055 + B1_Mus2 SINE Alu 2 142 -5 1 920 296 27 0 0 chr1 44000377 44000414 -153195018 - U5 snRNA snRNA -77 39 3 2 920 1170 62 107 11 chr1 44000415 44000593 -153194839 + L1_Mus1 LINE L1 6373 6567 0 3 920 267 293 146 22 chr1 44000986 44001164 -153194268 - RMER30 DNA MER1_type -1 201 2 4 920 2495 187 234 63 chr1 44001166 44001926 -153193506 + RMER19B LTR ERVK 1 890 -12 5 920 721 300 65 128 chr1 44002406 44002696 -153192736 + B4A SINE B4 1 272 -20 6 920 3388 25 2 2 chr1 44002990 44003386 -153192046 - MTA_Mm LTR MaLR 0 396 1 7 920 21 57 0 0 chr1 44003428 44003463 -153191969 + AT_rich Low_complexity Low_complexity 1 35 0 8 920 735 163 36 22 chr1 44003882 44004020 -153191412 - B1_Mur2 SINE Alu 0 149 10 9 920 3006 150 15 30 chr1 44004747 44005290 -153190142 - Lx2 LINE L1 0 6997 6463 1 920 696 295 14 28 chr1 44006666 44006882 -153188550 + B3 SINE B2 1 213 -3 1 920 245 322 89 38 chr1 44008247 44008405 -153187027 - L1ME3A LINE L1 -132 6041 5876 1 920 600 181 240 23 chr1 44008556 44008731 -153186701 + B3 SINE B2 1 213 -3 1 920 582 253 127 0 chr1 44008859 44009009 -153186423 - B3 SINE B2 0 216 48 1 920 260 297 47 64 chr1 44009191 44009346 -153186086 + MER99 DNA hAT? 2 155 -676 1 920 1115 82 0 13 chr1 44009346 44009495 -153185937 - B1_Mus2 SINE Alu 0 147 1 1 920 360 320 174 80 chr1 44009495 44009787 -153185645 + MER99 DNA hAT? 156 474 -357 1 920 282 338 0 12 chr1 44009884 44009965 -153185467 + ID4_ SINE ID 2 81 -2 1 920 233 324 189 0 chr1 44010667 44010778 -153184654 + B1F SINE Alu 4 135 -14 1 920 284 297 42 0 chr1 44012583 44012701 -153182731 - L1M5 LINE L1 -404 5769 5647 1 920 293 291 15 88 chr1 44012785 44013105 -153182327 - L1M5 LINE L1 -682 5491 5187 1 920 600 227 41 34 chr1 44013636 44013782 -153181650 + B1_Mur4 SINE Alu 2 148 -2 2 920 2226 170 131 79 chr1 44014883 44015427 -153180005 - RMER15 LTR ERVL 0 575 4 2 920 216 0 0 0 chr1 44015828 44015852 -153179580 + (TCTCTG)n Simple_repeat Simple_repeat 1 24 0 2 920 372 22 0 0 chr1 44015856 44015901 -153179531 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 920 378 0 0 0 chr1 44015944 44015986 -153179446 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 920 454 276 9 37 chr1 44016004 44016113 -153179319 - B3A SINE B2 -51 147 42 2 920 557 255 21 14 chr1 44016523 44016666 -153178766 - B1_Mur1 SINE Alu -5 144 1 2 920 300 243 384 14 chr1 44017227 44017373 -153178059 + RMER30 DNA MER1_type 1 200 -2 2 920 21 0 0 0 chr1 44018372 44018393 -153177039 + AT_rich Low_complexity Low_complexity 1 21 0 2 920 13086 88 28 18 chr1 44018565 44020316 -153175116 - L1VL2 LINE L1 -627 2988 1228 2 920 1369 66 49 0 chr1 44020316 44020499 -153174933 - B2_Mm2 SINE B2 -2 193 2 2 920 13086 98 44 6 chr1 44020499 44021648 -153173784 - L1VL2 LINE L1 -2388 1227 28 2 920 378 328 57 50 chr1 44022106 44022247 -153173185 + B3A SINE B2 2 143 -55 3 920 477 0 0 0 chr1 44022259 44022312 -153173120 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 920 267 388 0 0 chr1 44022573 44022640 -153172792 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 3 920 556 328 168 33 chr1 44022894 44023168 -153172264 - MTE-int LTR MaLR -539 1041 731 3 920 3220 224 96 7 chr1 44023208 44024038 -153171394 - Lx2B LINE L1 -10 6990 6087 3 920 572 254 173 68 chr1 44024038 44024304 -153171128 - MTE2a LTR MaLR -80 299 6 3 920 372 352 87 16 chr1 44024958 44025085 -153170347 + RSINE1 SINE B4 5 140 -25 3 920 231 310 0 0 chr1 44025118 44025176 -153170256 + CT-rich Low_complexity Low_complexity 4 61 0 3 920 854 140 29 22 chr1 44025224 44025363 -153170069 + B1_Mur4 SINE Alu 2 141 -9 3 920 188 283 64 76 chr1 44026011 44026168 -153169264 - L2a LINE L2 0 3426 3272 3 920 309 255 20 30 chr1 44026625 44026726 -153168706 - L1M4b LINE L1 -5034 2300 2201 4 920 192 40 0 0 chr1 44027749 44027774 -153167658 + (TTG)n Simple_repeat Simple_repeat 1 25 0 4 920 749 170 67 0 chr1 44027775 44027910 -153167522 - B1_Mur4 SINE Alu -6 144 1 4 920 2307 84 9 9 chr1 44028020 44028343 -153167089 - Lx3_Mus LINE L1 0 7009 6687 4 920 894 150 125 6 chr1 44028678 44028846 -153166586 - URR1B DNA MER1_type -1 224 37 4 920 189 0 0 0 chr1 44029738 44029759 -153165673 + (T)n Simple_repeat Simple_repeat 1 21 0 4 920 1135 75 0 7 chr1 44029759 44029907 -153165525 - B1_Mm SINE Alu 0 147 1 4 920 209 402 0 19 chr1 44031502 44031606 -153163826 + L2b LINE L2 3272 3373 -2 4 920 813 155 7 14 chr1 44031805 44031949 -153163483 + B1_Mur3 SINE Alu 1 143 -6 4 920 24 0 0 0 chr1 44032233 44032257 -153163175 + AT_rich Low_complexity Low_complexity 1 24 0 4 920 623 174 290 12 chr1 44033760 44033929 -153161503 + B3 SINE B2 1 216 0 5 920 647 207 29 7 chr1 44034350 44034486 -153160946 + B3A SINE B2 3 141 -57 5 920 23 78 0 0 chr1 44035519 44035570 -153159862 + AT_rich Low_complexity Low_complexity 1 51 0 5 920 213 191 64 0 chr1 44035909 44035956 -153159476 + PB1D10 SINE Alu 33 82 -35 5 920 3377 38 2 0 chr1 44036359 44036754 -153158678 - MTA_Mm LTR MaLR 0 396 1 5 920 1085 64 57 0 chr1 44036966 44037106 -153158326 + B1_Mus1 SINE Alu 1 148 0 5 920 419 356 38 32 chr1 44037917 44038103 -153157329 - ORR1E LTR MaLR -172 187 1 5 920 441 0 0 0 chr1 44038360 44038409 -153157023 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 920 247 334 0 6 chr1 44038925 44039000 -153156432 - ID4_ SINE ID -80 72 2 5 920 26 30 0 0 chr1 44039282 44039315 -153156117 + AT_rich Low_complexity Low_complexity 1 33 0 5 921 309 125 0 0 chr1 44041832 44041888 -153153544 + (T)n Simple_repeat Simple_repeat 1 56 0 6 921 553 277 123 0 chr1 44042707 44042837 -153152595 + RSINE1 SINE B4 3 148 -17 6 921 360 0 0 0 chr1 44042845 44042885 -153152547 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 921 21 0 0 0 chr1 44042885 44042906 -153152526 + AT_rich Low_complexity Low_complexity 1 21 0 6 921 300 309 1 119 chr1 44045020 44045143 -153150289 + PB1D10 SINE Alu 1 112 -37 6 921 381 317 10 0 chr1 44046064 44046165 -153149267 - RSINE1 SINE B4 -60 105 4 6 921 530 302 5 53 chr1 44047669 44047858 -153147574 + B3A SINE B2 4 183 -15 6 921 7600 52 3 7 chr1 44049321 44050295 -153145137 - L1Md_F2 LINE L1 -12 6570 5627 6 921 20819 162 79 32 chr1 44050369 44054814 -153140618 - Lx5 LINE L1 -341 6709 2052 6 921 351 0 0 0 chr1 44054814 44054853 -153140579 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 921 20819 167 96 30 chr1 44054853 44055929 -153139503 - Lx5 LINE L1 -3826 2051 889 6 921 648 276 172 39 chr1 44057812 44058068 -153137364 + B4A SINE B4 1 290 -2 7 921 24 0 0 0 chr1 44058335 44058359 -153137073 + GC_rich Low_complexity Low_complexity 1 24 0 7 921 28 29 0 0 chr1 44059806 44059841 -153135591 + AT_rich Low_complexity Low_complexity 1 35 0 7 921 363 208 28 73 chr1 44061917 44062026 -153133406 + MT2B LTR ERVL 154 257 -344 7 921 748 145 81 0 chr1 44061941 44062065 -153133367 + B1_Mur3 SINE Alu 10 143 -6 7 921 216 355 85 0 chr1 44062569 44062710 -153132722 - RSINE1 SINE B4 -12 153 1 7 921 300 243 167 81 chr1 44063019 44063391 -153132041 - L1M5 LINE L1 -520 5659 5256 7 921 24 0 0 0 chr1 44063488 44063512 -153131920 + AT_rich Low_complexity Low_complexity 1 24 0 7 921 637 219 78 0 chr1 44063512 44063640 -153131792 - B1F2 SINE Alu 0 149 12 7 921 198 0 0 0 chr1 44063652 44063674 -153131758 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 7 921 441 0 0 0 chr1 44064291 44064340 -153131092 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 921 725 255 50 30 chr1 44064355 44064557 -153130875 - B3 SINE B2 -9 207 2 8 921 403 241 263 24 chr1 44064569 44064688 -153130744 - Lx7 LINE L1 0 7473 7322 8 921 447 68 0 0 chr1 44064688 44064747 -153130685 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 921 413 241 263 24 chr1 44064747 44064878 -153130554 - Lx7 LINE L1 -152 7321 7154 8 921 237 315 111 36 chr1 44064884 44065164 -153130268 - L1M5 LINE L1 -1421 4725 4425 7 921 888 278 36 64 chr1 44065639 44065889 -153129543 - B4A SINE B4 -2 290 48 8 921 264 295 35 88 chr1 44065850 44066021 -153129411 - B2_Mm2 SINE B2 -27 168 7 8 921 235 167 70 53 chr1 44066131 44066188 -153129244 + PB1D9 SINE Alu 49 106 -14 8 921 582 227 0 0 chr1 44068229 44068339 -153127093 + B1_Mur2 SINE Alu 7 116 -33 8 921 346 279 71 45 chr1 44068339 44068383 -153127049 + B4A SINE B4 92 249 -43 8 921 842 230 32 83 chr1 44072270 44072488 -153122944 - B3 SINE B2 -6 210 4 8 921 1254 55 7 0 chr1 44072987 44073132 -153122300 + B1_Mus2 SINE Alu 2 147 0 9 921 252 100 0 0 chr1 44073133 44073173 -153122259 + (A)n Simple_repeat Simple_repeat 1 40 0 9 921 309 290 0 80 chr1 44073173 44073248 -153122184 + RSINE1 SINE B4 91 159 -6 9 921 576 281 20 14 chr1 44073289 44073437 -153121995 + RSINE1 SINE B4 11 159 -6 9 921 231 350 106 32 chr1 44073437 44073470 -153121962 + B3 SINE B2 37 205 -11 9 921 331 207 136 11 chr1 44074779 44074867 -153120565 + PB1 SINE Alu 29 127 0 9 921 242 219 16 0 chr1 44076924 44076988 -153118444 + CT-rich Low_complexity Low_complexity 1 65 0 9 921 253 289 129 40 chr1 44077975 44078076 -153117356 + PB1D10 SINE Alu 7 116 -1 9 921 198 0 0 0 chr1 44078077 44078099 -153117333 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 9 921 3889 191 169 5 chr1 44078442 44078657 -153116775 - Lx5 LINE L1 0 7050 6790 9 921 189 0 0 0 chr1 44078657 44078678 -153116754 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 921 3889 191 169 5 chr1 44078678 44079343 -153116089 - Lx5 LINE L1 -261 6789 6026 9 921 457 318 46 20 chr1 44079950 44080146 -153115286 + MER20 DNA MER1_type 4 204 -15 1 921 202 288 81 14 chr1 44080217 44080291 -153115141 + MIR SINE MIR 69 147 -115 1 921 233 170 43 0 chr1 44080501 44080548 -153114884 + MTE-int LTR MaLR 1 49 -1531 1 921 321 328 11 0 chr1 44080551 44080648 -153114784 - MTE-int LTR MaLR -722 858 772 1 921 228 227 0 0 chr1 44080637 44080681 -153114751 + ORR1E LTR MaLR 309 352 -7 1 921 661 241 12 31 chr1 44080686 44080903 -153114529 - L1M2 LINE L1 -1448 4695 4457 1 921 354 267 81 94 chr1 44081101 44081250 -153114182 + RSINE1 SINE B4 7 153 -12 1 921 31 58 0 0 chr1 44081354 44081406 -153114026 + AT_rich Low_complexity Low_complexity 1 52 0 1 921 1355 284 21 32 chr1 44082963 44083341 -153112091 + MTE2b LTR MaLR 1 374 -5 1 921 393 246 55 39 chr1 44083576 44083703 -153111729 + MTE2a LTR MaLR 247 375 -4 1 921 534 280 55 27 chr1 44083813 44084033 -153111399 + L1MC1 LINE L1 5896 6121 -212 1 921 1913 39 0 0 chr1 44084043 44084275 -153111157 + IAPEY2_LTR LTR ERVK 32 263 -94 1 921 1758 114 81 4 chr1 44085524 44085797 -153109635 - L1_Mus3 LINE L1 -4 6634 6341 1 921 2701 151 25 0 chr1 44085801 44086246 -153109186 - L1_Mm LINE L1 -760 5123 4668 1 921 1472 84 37 14 chr1 44086248 44086466 -153108966 - L1_Mus3 LINE L1 0 6638 6416 1 921 298 152 0 0 chr1 44086484 44086530 -153108902 - Lx LINE L1 -529 6125 6080 1 921 1060 170 62 19 chr1 44086664 44086874 -153108558 + MYSERV-int LTR ERVK 6326 6544 -6 1 921 776 219 99 76 chr1 44086882 44086970 -153108462 + RLTR11B LTR ERVK 7 101 -352 1 921 324 0 0 0 chr1 44086970 44087006 -153108426 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 921 776 245 92 61 chr1 44087006 44087324 -153108108 + RLTR11B LTR ERVK 102 431 -10 1 921 254 273 110 69 chr1 44087417 44087612 -153107820 - MLT2B3 LTR ERVL -383 334 135 1 921 347 318 57 38 chr1 44087995 44088024 -153107408 + ID_B1 SINE B4 64 223 -1 1 921 743 188 0 0 chr1 44088024 44088152 -153107280 + B1_Mus2 SINE Alu 19 146 -1 1 921 2211 105 9 0 chr1 44088241 44088575 -153106857 + MusHAL1 LINE L1 1804 2140 -572 1 921 3647 172 26 3 chr1 44088571 44089265 -153106167 + L1MC4 LINE L1 4764 5514 -2368 1 921 247 280 77 79 chr1 44089252 44089542 -153105890 + L1MC4 LINE L1 7233 7472 -570 1 921 230 234 29 72 chr1 44089621 44089690 -153105742 - RLTR14 LTR ERV1 -55 327 262 1 921 725 286 28 37 chr1 44090236 44090450 -153104982 + ID_B1 SINE B4 6 217 -7 1 921 858 222 89 30 chr1 44090719 44090984 -153104448 + RMER21B LTR ERV1 322 684 -263 1 921 256 211 58 0 chr1 44091066 44091118 -153104314 + B1_Mur1 SINE Alu 95 149 0 1 921 245 330 71 80 chr1 44091242 44091354 -153104078 + RSINE1 SINE B4 2 112 -53 1 921 2356 209 85 81 chr1 44091753 44092651 -153102781 - RMER17B LTR ERVK -3 857 3 1 921 524 321 64 36 chr1 44092653 44092873 -153102559 - B4A SINE B4 -65 227 2 1 921 180 0 0 0 chr1 44093085 44093105 -153102327 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 921 321 299 10 10 chr1 44093706 44093804 -153101628 + MTE2b LTR MaLR 1 98 -281 1 921 798 277 63 63 chr1 44093817 44094148 -153101284 - MTD LTR MaLR -83 336 6 1 921 706 242 55 22 chr1 44094153 44094335 -153101097 + MTE2b LTR MaLR 66 253 -126 1 921 267 234 0 0 chr1 44094404 44094451 -153100981 + ID4_ SINE ID 31 77 -6 1 921 236 356 26 0 chr1 44094848 44094963 -153100469 - L1MDa LINE L1 -6237 396 279 1 921 3293 87 29 0 chr1 44095049 44095496 -153099936 + Lx2 LINE L1 6416 6875 -122 1 921 2858 80 13 5 chr1 44095496 44095884 -153099548 + MTA_Mm LTR MaLR 6 396 0 1 921 639 151 0 0 chr1 44095889 44095995 -153099437 + Lx2 LINE L1 6892 6997 0 1 921 3008 63 5 24 chr1 44096058 44096434 -153098998 + L1_Mus1 LINE L1 6199 6567 0 1 921 224 226 19 19 chr1 44096516 44096570 -153098862 + B4A SINE B4 7 60 -232 1 921 427 216 119 59 chr1 44096567 44096685 -153098747 + B4A SINE B4 168 292 0 1 921 325 366 171 20 chr1 44096790 44097281 -153098151 - L2 LINE L2 -860 2559 1995 1 921 1450 294 72 20 chr1 44097351 44097809 -153097623 - Lx6 LINE L1 -42 7418 6937 1 921 598 296 81 32 chr1 44098072 44098355 -153097077 + MLT1A0 LTR MaLR 2 298 -67 1 921 286 216 202 61 chr1 44098914 44099077 -153096355 + MER119 DNA MER1_type 262 447 -136 1 921 240 323 63 95 chr1 44099105 44099420 -153096012 + MT2A LTR ERVL 67 371 -162 1 921 198 0 0 0 chr1 44099672 44099694 -153095738 + (T)n Simple_repeat Simple_repeat 1 22 0 1 921 516 16 0 0 chr1 44099892 44099953 -153095479 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 921 607 196 0 0 chr1 44100448 44100560 -153094872 - Lx2A1 LINE L1 -125 6883 6772 1 921 225 175 39 49 chr1 44101605 44101707 -153093725 + (TGAG)n Simple_repeat Simple_repeat 3 103 0 1 921 387 0 0 0 chr1 44101725 44101768 -153093664 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 921 245 310 67 114 chr1 44101830 44102085 -153093347 + RLTR25A LTR ERVK 861 1103 0 1 921 546 302 77 58 chr1 44102194 44102590 -153092842 + MMERGLN-int LTR ERV1 2094 2466 -5140 1 921 567 281 52 100 chr1 44102596 44103075 -153092357 + MMERGLN-int LTR ERV1 4021 4421 -3135 1 921 421 319 65 40 chr1 44104105 44104458 -153090974 + MMERGLN-int LTR ERV1 4662 5023 -40 1 921 1375 87 171 60 chr1 44104458 44104739 -153090693 + RLTR47_MM LTR ERV1 2 313 -219 1 921 25935 128 19 33 chr1 44104739 44107028 -153088404 + L1_Mus4 LINE L1 588 2799 -3084 1 921 929 53 8 0 chr1 44107028 44107160 -153088272 + (CAAAC)n Simple_repeat Simple_repeat 2 134 0 1 921 25935 135 16 35 chr1 44107160 44111034 -153084398 + L1_Mus4 LINE L1 2800 6629 -7 1 921 1790 16 0 0 chr1 44111155 44111342 -153084090 + B2_Mm1t SINE B2 1 187 -6 1 921 923 238 91 75 chr1 44111424 44111908 -153083524 - MT2B LTR ERVL -41 560 1 1 921 251 217 112 40 chr1 44112063 44112188 -153083244 + L1MC5 LINE L1 7643 7776 -185 1 921 21 36 0 0 chr1 44125134 44125162 -153070270 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 456 19 0 0 chr1 44132556 44132609 -153062823 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 921 229 321 0 0 chr1 44133053 44133106 -153062326 + MLT2C2 LTR ERVL 437 489 -70 1 921 342 191 0 14 chr1 44133179 44133248 -153062184 + PB1D10 SINE Alu 37 104 -13 1 921 306 0 0 0 chr1 44133248 44133282 -153062150 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 921 235 322 157 0 chr1 44133420 44133535 -153061897 - Tigger7 DNA MER2_type -7 2484 2352 1 921 314 269 0 15 chr1 44133543 44133611 -153061821 - ID4_ SINE ID -2 81 15 1 921 465 284 47 0 chr1 44133722 44133849 -153061583 - Tigger7 DNA MER2_type -2078 413 281 1 921 1891 165 35 8 chr1 44133834 44134200 -153061232 + RMER6A LTR ERVK 381 756 0 1 921 566 138 11 0 chr1 44134200 44134291 -153061141 - ORR1D1 LTR MaLR -282 92 1 1 921 679 265 7 0 chr1 44134295 44134442 -153060990 - Tigger7 DNA MER2_type -2343 148 1 1 921 253 302 32 0 chr1 44134920 44134932 -153060500 + ID_B1 SINE B4 70 134 -90 1 921 270 176 39 0 chr1 44134932 44134983 -153060449 + B1_Mus2 SINE Alu 1 53 -94 1 921 180 394 45 0 chr1 44135036 44135102 -153060330 + L2b LINE L2 3113 3181 -194 1 921 814 158 7 22 chr1 44135872 44136008 -153059424 + B1_Mur3 SINE Alu 9 142 -7 1 921 204 163 0 0 chr1 44136512 44136555 -153058877 + A-rich Low_complexity Low_complexity 1 43 0 1 921 223 297 25 42 chr1 44136734 44136844 -153058588 - B1F SINE Alu -16 133 26 1 921 542 15 0 15 chr1 44136854 44136922 -153058510 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 1 921 506 158 28 65 chr1 44136951 44137059 -153058373 - B1F SINE Alu -45 104 1 1 921 25 65 0 0 chr1 44137059 44137105 -153058327 + AT_rich Low_complexity Low_complexity 1 46 0 1 921 2094 169 116 13 chr1 44137498 44137961 -153057471 - RLTR11A LTR ERVK -2 526 16 1 921 853 221 42 99 chr1 44138065 44138468 -153056964 + RLTR20A LTR ERVK 21 472 -79 1 921 387 0 0 0 chr1 44138468 44138511 -153056921 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 1 921 282 293 27 109 chr1 44138511 44138598 -153056834 + RLTR20A LTR ERVK 473 551 0 1 921 252 0 0 0 chr1 44139298 44139326 -153056106 + (T)n Simple_repeat Simple_repeat 1 28 0 1 921 4416 104 46 3 chr1 44139389 44140044 -153055388 + Lx3A LINE L1 6299 6981 0 1 921 488 31 31 0 chr1 44140058 44140123 -153055309 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 1 921 784 101 0 15 chr1 44140123 44140254 -153055178 + (GGGA)n Simple_repeat Simple_repeat 3 131 0 1 921 24 0 0 0 chr1 44140310 44140334 -153055098 + AT_rich Low_complexity Low_complexity 1 24 0 1 921 2877 140 69 10 chr1 44140342 44140861 -153054571 - Lx3B LINE L1 -3 6970 6421 1 921 486 210 97 0 chr1 44141150 44141274 -153054158 + ORR1B1 LTR MaLR 1 136 -258 1 921 1164 173 92 4 chr1 44141505 44141743 -153053689 - MTC LTR MaLR -9 412 154 1 921 1106 90 0 0 chr1 44141786 44141930 -153053502 + B1_Mm SINE Alu 1 144 -3 1 921 264 59 0 0 chr1 44141930 44141964 -153053468 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 921 32 0 0 0 chr1 44141964 44141996 -153053436 + AT_rich Low_complexity Low_complexity 1 32 0 1 921 387 246 30 6 chr1 44142064 44142163 -153053269 - ID4 SINE ID -48 104 8 1 921 1506 33 33 5 chr1 44142487 44142671 -153052761 + B2_Mm2 SINE B2 2 190 -5 1 921 25 0 0 0 chr1 44142789 44142814 -153052618 + AT_rich Low_complexity Low_complexity 1 25 0 1 921 430 284 139 16 chr1 44143005 44143134 -153052298 - B4A SINE B4 0 292 148 1 921 622 232 35 21 chr1 44144466 44144611 -153050821 - B1_Mur2 SINE Alu 0 149 3 1 921 230 298 47 12 chr1 44145666 44145751 -153049681 + RMER4A LTR ERVK 8 95 -371 1 921 1083 45 0 8 chr1 44146823 44146957 -153048475 - B1_Mm SINE Alu -14 133 1 1 921 192 77 0 0 chr1 44148493 44148519 -153046913 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 921 10849 103 51 25 chr1 44148592 44151035 -153044397 + Lx3A LINE L1 4 2842 -3044 1 921 19467 73 40 15 chr1 44151702 44154707 -153040725 + Lx3A LINE L1 2836 5912 -1069 1 921 332 22 0 22 chr1 44154707 44154753 -153040679 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1 921 6973 132 67 16 chr1 44154753 44155805 -153039627 + Lx3A LINE L1 5913 6977 -4 1 921 4458 41 8 0 chr1 44155851 44156387 -153039045 + L1Md_F2 LINE L1 6042 6581 -1 2 921 380 267 140 27 chr1 44156395 44156593 -153038839 - MIR SINE MIR -46 222 16 2 921 212 171 24 0 chr1 44157688 44157729 -153037703 + CT-rich Low_complexity Low_complexity 4 45 0 2 921 357 234 90 36 chr1 44158054 44158165 -153037267 + PB1D10 SINE Alu 1 117 0 2 921 216 0 0 0 chr1 44158835 44158859 -153036573 + (A)n Simple_repeat Simple_repeat 1 24 0 2 921 240 143 0 0 chr1 44159608 44159650 -153035782 - RMER30 DNA MER1_type -42 160 119 2 921 1229 14 7 0 chr1 44159654 44159801 -153035631 + (TC)n Simple_repeat Simple_repeat 1 148 0 2 921 360 0 0 0 chr1 44160212 44160252 -153035180 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 921 619 277 40 91 chr1 44161406 44161704 -153033728 + MLT1D LTR MaLR 223 505 0 2 921 3052 51 7 37 chr1 44161741 44162149 -153033283 + MTA_Mm LTR MaLR 1 396 0 2 921 330 229 107 12 chr1 44162164 44162248 -153033184 - MER58B DNA MER1_type -238 103 12 2 921 796 209 0 0 chr1 44162266 44162414 -153033018 + B1_Mur1 SINE Alu 2 149 0 2 921 233 29 29 0 chr1 44162691 44162725 -153032707 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 921 515 232 101 7 chr1 44162828 44162967 -153032465 + MLT2D LTR ERVL 21 172 -242 2 921 601 230 119 0 chr1 44163490 44163616 -153031816 - B1F SINE Alu -8 141 1 2 921 23 0 0 0 chr1 44163744 44163767 -153031665 + AT_rich Low_complexity Low_complexity 1 23 0 2 921 820 283 122 48 chr1 44164936 44165207 -153030225 - B4A SINE B4 0 292 2 2 921 303 352 156 0 chr1 44165214 44165342 -153030090 - B1F2 SINE Alu 0 149 2 2 921 615 285 51 17 chr1 44165361 44165536 -153029896 - B3A SINE B2 -1 197 17 2 921 1487 48 21 0 chr1 44166109 44166295 -153029137 - B2_Mm2 SINE B2 -5 190 1 2 921 293 278 20 91 chr1 44166342 44166441 -153028991 - 5S rRNA rRNA -28 93 2 2 921 314 273 13 13 chr1 44166581 44166659 -153028773 - ID4_ SINE ID -5 78 1 2 921 270 169 13 145 chr1 44168296 44168348 -153027084 + B4A SINE B4 1 45 -247 2 921 1015 70 78 0 chr1 44168348 44168477 -153026955 + B1_Mus1 SINE Alu 1 139 -9 2 921 290 45 23 0 chr1 44168477 44168521 -153026911 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 2 921 686 261 297 42 chr1 44168521 44168717 -153026715 + B4 SINE B4 46 292 0 2 921 245 333 59 17 chr1 44170103 44170222 -153025210 + B1F SINE Alu 1 124 -25 2 921 747 271 36 113 chr1 44170709 44171084 -153024348 + MLT1C LTR MaLR 1 312 -78 2 922 371 307 45 3 chr1 44171982 44172147 -153023285 + B3A SINE B2 1 170 -25 2 922 491 193 16 66 chr1 44172824 44172946 -153022486 - B1F2 SINE Alu -32 117 2 2 922 656 200 0 0 chr1 44173033 44173138 -153022294 - B3 SINE B2 -110 106 2 2 922 490 254 98 60 chr1 44173396 44173580 -153021852 - B3A SINE B2 -4 194 4 2 922 216 0 0 0 chr1 44173580 44173604 -153021828 + (T)n Simple_repeat Simple_repeat 1 24 0 2 922 670 298 41 36 chr1 44174486 44174681 -153020751 + B3A SINE B2 1 196 -2 2 922 261 279 0 0 chr1 44175851 44175912 -153019520 + CT-rich Low_complexity Low_complexity 3 63 0 2 922 207 0 0 0 chr1 44176298 44176321 -153019111 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 2 922 180 268 24 0 chr1 44177584 44177625 -153017807 + L2a LINE L2 3373 3414 -12 2 922 333 0 0 0 chr1 44177702 44177739 -153017693 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 922 356 345 14 27 chr1 44178803 44178949 -153016483 - B1F SINE Alu -1 148 5 2 922 9359 138 63 14 chr1 44179885 44181611 -153013821 + ORR1A2-int LTR MaLR 154 1963 0 2 922 2327 132 3 0 chr1 44181611 44181937 -153013495 + ORR1A2 LTR MaLR 1 327 0 2 922 758 283 179 31 chr1 44182064 44182407 -153013025 - L1MB8 LINE L1 -287 5891 5480 2 922 1232 74 0 0 chr1 44182407 44182555 -153012877 - B1_Mus1 SINE Alu 0 148 1 2 922 758 283 179 31 chr1 44182555 44182729 -153012703 - L1MB8 LINE L1 -699 5479 5297 2 922 432 314 14 48 chr1 44182793 44182940 -153012492 - B4A SINE B4 -148 144 3 2 922 830 201 15 0 chr1 44185726 44185860 -153009572 + B1_Mur3 SINE Alu 1 136 -13 2 922 492 32 0 0 chr1 44186534 44186596 -153008836 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 922 180 111 0 0 chr1 44186849 44186876 -153008556 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 922 227 353 112 0 chr1 44187162 44187278 -153008154 - MER31B LTR ERV1 0 466 338 2 922 21 36 0 0 chr1 44187371 44187399 -153008033 + AT_rich Low_complexity Low_complexity 1 28 0 2 922 387 274 127 8 chr1 44187811 44187929 -153007503 - RSINE1 SINE B4 -32 133 2 2 922 374 278 97 60 chr1 44189675 44189809 -153005623 + MER5A DNA MER1_type 6 144 -45 2 922 225 147 0 0 chr1 44190244 44190278 -153005154 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 2 922 536 213 0 8 chr1 44190278 44190406 -153005026 + CT-rich Low_complexity Low_complexity 2 128 0 2 922 352 82 0 0 chr1 44190414 44190463 -153004969 - B1_Mus2 SINE Alu -1 146 98 2 922 630 0 0 0 chr1 44190502 44190572 -153004860 + (TTCTC)n Simple_repeat Simple_repeat 2 71 0 2 922 831 175 0 27 chr1 44190617 44190764 -153004668 - B1_Mur3 SINE Alu -5 144 2 2 922 358 253 0 12 chr1 44190797 44190881 -153004551 + B1F SINE Alu 4 86 -63 2 922 6140 53 8 7 chr1 44190966 44191711 -153003721 - Lx3_Mus LINE L1 0 7009 6264 2 922 256 254 143 0 chr1 44191711 44191774 -153003658 + 5S rRNA rRNA 19 90 -31 2 922 2221 185 35 5 chr1 44192724 44193125 -153002307 - MTC LTR MaLR -8 413 1 2 922 210 118 0 0 chr1 44193191 44193225 -153002207 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 922 287 274 46 35 chr1 44195082 44195169 -153000263 + MER5B DNA MER1_type 46 133 -45 2 922 207 0 0 0 chr1 44195732 44195755 -152999677 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 922 422 347 49 0 chr1 44195863 44196007 -152999425 + RSINE1 SINE B4 3 153 -12 2 922 431 327 54 50 chr1 44196074 44196296 -152999136 - RMER12 LTR ERVK 0 1322 1100 2 922 6309 129 183 8 chr1 44196494 44196670 -152998762 - RLTR22_Mus LTR ERVK -331 1477 1300 2 922 423 0 0 0 chr1 44196670 44196717 -152998715 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 922 6309 129 183 8 chr1 44196717 44197797 -152997635 - RLTR22_Mus LTR ERVK -509 1299 1 2 922 245 276 149 30 chr1 44197874 44198143 -152997289 - L1M5 LINE L1 -1581 4565 4265 2 922 256 304 14 0 chr1 44198239 44198308 -152997124 + PB1 SINE Alu 48 117 -10 2 922 277 224 155 0 chr1 44199176 44199234 -152996198 + B1F2 SINE Alu 1 67 -82 2 922 402 21 0 0 chr1 44199278 44199325 -152996107 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 922 21 0 0 0 chr1 44201590 44201611 -152993821 + AT_rich Low_complexity Low_complexity 1 21 0 2 922 252 0 0 0 chr1 44201899 44201927 -152993505 + (T)n Simple_repeat Simple_repeat 1 28 0 2 922 952 144 8 173 chr1 44202221 44202464 -152992968 - ORR1A4 LTR MaLR -126 203 1 2 922 535 232 137 114 chr1 44202834 44203097 -152992335 - MLT1B LTR MaLR -4 386 118 2 922 231 233 151 32 chr1 44203233 44203326 -152992106 - MLT1B LTR MaLR -261 129 26 2 922 216 86 0 0 chr1 44206756 44206791 -152988641 + (T)n Simple_repeat Simple_repeat 1 35 0 2 922 516 46 0 0 chr1 44207236 44207301 -152988131 - L1_Mus1 LINE L1 -2 6565 6501 2 922 423 0 0 0 chr1 44207708 44207755 -152987677 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 922 1689 158 152 14 chr1 44207758 44208106 -152987326 + MTC LTR MaLR 18 413 -8 2 922 29 0 0 62 chr1 44208168 44208216 -152987216 + AT_rich Low_complexity Low_complexity 1 45 0 2 922 13789 84 31 6 chr1 44208766 44211308 -152984124 - L1VL2 LINE L1 -626 2989 388 2 922 245 154 154 49 chr1 44211313 44211436 -152983996 - L1VL2 LINE L1 -5812 523 388 2 922 2163 174 59 25 chr1 44211687 44212177 -152983255 - L1VL2 LINE L1 -5766 569 63 2 922 1305 77 71 0 chr1 44212674 44212842 -152982590 + B2_Mm2 SINE B2 2 181 -14 2 922 180 0 0 0 chr1 44212852 44212872 -152982560 + (T)n Simple_repeat Simple_repeat 1 20 0 2 922 565 263 55 50 chr1 44212891 44213091 -152982341 - RMER30 DNA MER1_type 0 202 2 2 922 453 229 41 14 chr1 44214003 44214149 -152981283 - Lx9 LINE L1 -8 7636 7487 2 922 586 191 94 16 chr1 44214211 44214339 -152981093 - B1_Mus2 SINE Alu -9 138 1 2 922 261 201 27 7 chr1 44214345 44214431 -152981001 - Lx2 LINE L1 -1 6996 6934 2 922 852 185 14 0 chr1 44214522 44214668 -152980764 - B1_Mur1 SINE Alu -1 148 1 2 922 530 283 15 23 chr1 44215769 44215899 -152979533 + B4A SINE B4 1 129 -163 2 922 338 348 12 69 chr1 44215899 44215942 -152979490 + B3A SINE B2 1 163 -35 2 922 604 178 100 36 chr1 44216713 44216853 -152978579 - B1_Mur3 SINE Alu 0 149 1 2 922 496 303 21 14 chr1 44216869 44217013 -152978419 - B1F SINE Alu -3 146 2 2 922 1204 241 128 27 chr1 44217259 44217596 -152977836 - ORR1D1 LTR MaLR 0 374 4 2 922 390 245 89 30 chr1 44218214 44218315 -152977117 - PB1D9 SINE Alu -13 107 1 2 922 299 316 26 26 chr1 44218413 44218491 -152976941 + ID4_ SINE ID 1 78 -5 2 922 181 302 44 44 chr1 44219075 44219165 -152976267 + L2b LINE L2 3275 3364 -11 2 922 580 246 0 15 chr1 44220438 44220570 -152974862 + B1F2 SINE Alu 18 147 -2 2 922 241 218 70 35 chr1 44220986 44221043 -152974389 + MTEb LTR MaLR 250 308 -71 2 922 2470 296 92 29 chr1 44221099 44221444 -152973988 - Lx8 LINE L1 -359 7114 6755 2 922 1174 82 0 7 chr1 44221444 44221583 -152973849 + B1_Mus2 SINE Alu 1 139 -8 2 922 282 29 0 0 chr1 44221583 44221618 -152973814 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 922 2470 296 92 29 chr1 44221626 44222285 -152973147 - Lx8 LINE L1 -719 6754 6046 2 922 547 272 51 23 chr1 44222751 44222928 -152972504 + B3A SINE B2 1 182 -16 2 922 201 129 0 0 chr1 44222930 44222961 -152972471 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 922 23 33 0 0 chr1 44222961 44222991 -152972441 + AT_rich Low_complexity Low_complexity 1 30 0 3 922 261 0 0 0 chr1 44224801 44224830 -152970602 + (T)n Simple_repeat Simple_repeat 1 29 0 3 922 1007 229 14 10 chr1 44224937 44225144 -152970288 - B3 SINE B2 0 216 9 3 922 252 0 0 0 chr1 44225325 44225353 -152970079 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 3 922 182 91 0 29 chr1 44225359 44225393 -152970039 + (TCTCCC)n Simple_repeat Simple_repeat 3 35 0 3 922 256 275 56 56 chr1 44225611 44225719 -152969713 + MIRc SINE MIR 24 131 -137 3 922 309 140 0 0 chr1 44225734 44225791 -152969641 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 922 276 286 106 32 chr1 44225900 44225952 -152969480 + YREP_Mm Unknown Unknown 125 185 -1627 3 922 813 50 17 8 chr1 44225952 44226072 -152969360 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 3 922 276 286 106 32 chr1 44226072 44226207 -152969225 + YREP_Mm Unknown Unknown 186 325 -1487 3 922 345 273 253 8 chr1 44226283 44226674 -152968758 - L1MC4 LINE L1 -797 7245 6759 3 922 234 81 0 0 chr1 44226722 44226759 -152968673 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 922 2076 171 77 10 chr1 44226966 44227474 -152967958 - L1_Mur3 LINE L1 -1805 4075 3534 3 922 231 167 0 0 chr1 44227478 44227520 -152967912 + RLTR11A2 LTR ERVK 281 322 -205 3 922 1748 162 35 18 chr1 44227521 44227598 -152967834 - L1_Mur3 LINE L1 -2808 3072 2993 3 922 387 0 0 0 chr1 44227598 44227641 -152967791 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 922 1748 162 35 18 chr1 44227641 44227958 -152967474 - L1_Mur3 LINE L1 -2888 2992 2671 3 922 3734 153 52 29 chr1 44227964 44228697 -152966735 - RMER6A LTR ERVK 0 756 7 3 922 2375 142 37 4 chr1 44228697 44228799 -152966633 - L1_Mur3 LINE L1 -3230 2650 2544 3 922 2157 167 17 8 chr1 44228799 44229161 -152966271 + ORR1B2 LTR MaLR 3 367 0 3 922 2375 142 37 4 chr1 44229161 44229518 -152965914 - L1_Mur3 LINE L1 -3337 2543 2177 3 922 1227 229 41 15 chr1 44229514 44229855 -152965577 - L1_Mur3 LINE L1 -7077 651 302 3 922 272 380 103 30 chr1 44231644 44231986 -152963446 - L2a LINE L2 -165 3261 2896 3 922 75 22 0 0 chr1 44232327 44232416 -152963016 + AT_rich Low_complexity Low_complexity 1 89 0 3 922 857 179 7 7 chr1 44232420 44232561 -152962871 + B1_Mur4 SINE Alu 10 150 0 3 922 391 48 16 16 chr1 44232571 44232634 -152962798 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 3 922 346 315 83 30 chr1 44232865 44232999 -152962433 - PB1 SINE Alu -4 123 9 3 922 279 238 63 0 chr1 44233626 44233689 -152961743 + B3A SINE B2 22 88 -110 3 922 412 159 16 4 chr1 44235261 44235357 -152960075 - ORR1A2 LTR MaLR -229 97 1 3 922 279 0 0 0 chr1 44235400 44235431 -152960001 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 3 922 224 345 0 0 chr1 44235432 44235487 -152959945 - ID4_ SINE ID -3 80 26 3 922 239 0 32 0 chr1 44235908 44235939 -152959493 + (TTA)n Simple_repeat Simple_repeat 1 32 0 3 922 1811 108 74 7 chr1 44238387 44238686 -152956746 - ORR1A2 LTR MaLR -8 319 1 3 922 1378 369 31 14 chr1 44238954 44239937 -152955495 - RodERV21-int LTR ERV1 -198 4793 3794 3 922 646 334 64 64 chr1 44240047 44240953 -152954479 - RodERV21-int LTR ERV1 -1330 3661 2756 3 922 1263 97 43 0 chr1 44241031 44241216 -152954216 + B2_Mm2 SINE B2 3 195 0 3 922 276 179 0 0 chr1 44241517 44241573 -152953859 - MuLV-int LTR ERV1 -2660 4946 4891 3 922 5457 98 41 23 chr1 44241781 44243237 -152952195 + L1VL4 LINE L1 255 1736 -1823 3 922 2601 272 61 36 chr1 44243234 44243897 -152951535 - Lx7 LINE L1 -601 7095 6411 3 922 937 99 13 0 chr1 44243897 44244049 -152951383 + (TATAG)n Simple_repeat Simple_repeat 2 155 0 3 922 2601 272 61 36 chr1 44244049 44244215 -152951217 - Lx7 LINE L1 -1286 6410 6239 3 922 243 0 0 0 chr1 44244215 44244242 -152951190 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 922 2601 272 61 36 chr1 44244242 44244372 -152951060 - Lx7 LINE L1 -1458 6238 6111 3 922 2552 46 64 6 chr1 44244691 44245018 -152950414 + ORR1A1 LTR MaLR 1 346 0 3 922 7710 133 51 6 chr1 44246189 44247757 -152947675 + Lx2 LINE L1 5357 6995 -2 3 922 6621 101 14 3 chr1 44248559 44249622 -152945810 - L1_Mur1 LINE L1 -886 5000 3926 3 922 4529 103 21 65 chr1 44249623 44250493 -152944939 - L1_Mur1 LINE L1 -2350 3536 2706 3 922 8241 108 36 20 chr1 44250490 44252490 -152942942 + Lx3A LINE L1 4960 6974 -7 3 922 39 38 0 0 chr1 44252491 44252544 -152942888 + AT_rich Low_complexity Low_complexity 1 53 0 3 922 332 353 73 0 chr1 44253025 44253175 -152942257 + MER5A DNA MER1_type 11 171 -18 3 922 704 279 94 73 chr1 44253207 44253493 -152941939 + B4A SINE B4 1 292 0 3 922 2629 108 45 0 chr1 44253506 44253905 -152941527 - BGLII LTR ERVK -1 420 4 3 922 441 0 0 0 chr1 44253905 44253954 -152941478 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 922 561 174 0 0 chr1 44253954 44254115 -152941317 + GA-rich Low_complexity Low_complexity 1 161 0 3 922 562 202 0 161 chr1 44255502 44255720 -152939712 + FordPrefect DNA Tip100 773 955 -728 3 922 216 0 0 0 chr1 44256030 44256054 -152939378 + (T)n Simple_repeat Simple_repeat 1 24 0 3 922 236 157 39 0 chr1 44256995 44257046 -152938386 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 3 922 1512 139 91 4 chr1 44257116 44257369 -152938063 + RLTR25B LTR ERVK 1 275 -828 3 922 7045 96 3 17 chr1 44257369 44258106 -152937326 + Lx LINE L1 5629 6356 -298 3 922 552 15 0 0 chr1 44258106 44258171 -152937261 + (CCCTAA)n Simple_repeat Simple_repeat 5 69 0 3 922 7045 96 3 17 chr1 44258171 44258473 -152936959 + Lx LINE L1 6357 6653 -1 3 922 1974 170 16 27 chr1 44259175 44259550 -152935882 + RLTR25B LTR ERVK 282 652 -376 3 922 5241 76 5 9 chr1 44259553 44259814 -152935618 - L1_Mus3 LINE L1 -110 6528 6268 3 922 1884 133 16 6 chr1 44259814 44260131 -152935301 + RLTR46 LTR ERVK 1 320 0 3 922 5241 79 6 10 chr1 44260131 44260627 -152934805 - L1_Mus3 LINE L1 -371 6267 5773 3 922 182 247 276 51 chr1 44261645 44261743 -152933689 + MIRc SINE MIR 48 167 -101 3 922 603 173 9 19 chr1 44262310 44262416 -152933016 - B1_Mur3 SINE Alu -3 146 42 3 922 312 200 0 32 chr1 44262456 44262518 -152932914 - B1_Mus1 SINE Alu -88 60 1 3 922 251 241 35 71 chr1 44262518 44262541 -152932891 - B4 SINE B4 -148 144 63 3 922 393 272 37 12 chr1 44262805 44262887 -152932545 + PB1D10 SINE Alu 5 88 -29 3 922 1572 246 17 8 chr1 44264053 44264406 -152931026 + MTD LTR MaLR 61 416 -3 3 922 3554 97 22 2 chr1 44265492 44266001 -152929431 - L1_Mus3 LINE L1 -7 6631 6113 3 922 295 83 33 0 chr1 44267180 44267240 -152928192 + (TTTAA)n Simple_repeat Simple_repeat 4 65 0 3 922 183 42 0 0 chr1 44267693 44267717 -152927715 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 922 741 102 0 0 chr1 44268046 44268154 -152927278 + (GAAAA)n Simple_repeat Simple_repeat 3 110 0 3 922 237 220 34 0 chr1 44268171 44268230 -152927202 + L1MA6 LINE L1 5874 5934 -366 3 922 216 0 0 0 chr1 44271281 44271305 -152924127 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 922 535 112 0 17 chr1 44272092 44272210 -152923222 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 3 922 242 320 37 37 chr1 44273201 44273308 -152922124 + LTR16B LTR ERVL 345 451 -12 3 922 224 54 54 0 chr1 44276895 44276932 -152918500 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3 922 391 315 7 0 chr1 44277039 44277185 -152918247 + Lx6 LINE L1 7288 7434 -26 3 922 774 192 0 0 chr1 44277195 44277351 -152918081 + A-rich Low_complexity Low_complexity 5 160 0 3 922 468 259 26 9 chr1 44277516 44277629 -152917803 + B3 SINE B2 1 115 -101 3 922 7618 118 9 14 chr1 44278066 44279243 -152916189 - Lx2 LINE L1 0 6997 5827 3 922 6578 76 3 2 chr1 44279256 44280118 -152915314 - L1_Mus3 LINE L1 -6 6632 5770 3 922 2896 132 0 17 chr1 44280137 44280653 -152914779 - L1_Mm LINE L1 -950 4933 4427 3 922 1751 76 4 4 chr1 44280667 44280918 -152914514 - L1_Mus2 LINE L1 0 6566 6316 3 922 13445 157 13 78 chr1 44280921 44281963 -152913469 - L1VL4 LINE L1 -1453 4433 3428 3 922 299 311 45 32 chr1 44281963 44282119 -152913313 - LTRIS2 LTR ERV1 -53 511 354 3 922 13445 157 13 78 chr1 44282119 44285141 -152910291 - L1VL4 LINE L1 -1453 3427 506 3 922 381 257 17 103 chr1 44285441 44285558 -152909874 + MT2B LTR ERVL 149 255 -346 3 922 637 248 0 0 chr1 44285463 44285580 -152909852 + B1_Mus2 SINE Alu 6 122 -25 3 922 29 28 0 0 chr1 44285953 44285989 -152909443 + AT_rich Low_complexity Low_complexity 1 36 0 3 922 961 310 16 0 chr1 44286279 44286521 -152908911 - B4A SINE B4 -44 248 3 3 922 25 0 0 0 chr1 44286533 44286558 -152908874 + AT_rich Low_complexity Low_complexity 1 25 0 3 922 267 31 0 0 chr1 44286652 44286684 -152908748 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 922 380 163 54 0 chr1 44286712 44286804 -152908628 - Lx2A LINE L1 -11 6997 6901 3 922 6457 120 9 2 chr1 44286804 44287823 -152907609 - Lx2A LINE L1 -57 6951 5926 3 922 1066 212 26 98 chr1 44287823 44288169 -152907263 - MERVL-int LTR ERVL -5164 321 1 3 922 1800 113 4 15 chr1 44288169 44288439 -152906993 - MT2B2 LTR ERVL 0 584 318 3 922 6202 111 62 5 chr1 44288441 44290000 -152905432 - L1_Mus4 LINE L1 -8 6628 4985 3 922 6146 135 3 0 chr1 44289999 44291036 -152904396 + L1_Mm LINE L1 3669 4708 -1175 3 922 4090 158 69 40 chr1 44291036 44292024 -152903408 - RLTR13D6 LTR ERVK -39 944 1 3 922 1628 124 4 0 chr1 44292024 44292283 -152903149 + L1_Mm LINE L1 4703 4962 -921 3 922 2006 108 102 0 chr1 44292284 44292599 -152902833 - MT2B2 LTR ERVL -236 348 2 3 922 24 32 0 0 chr1 44292911 44292942 -152902490 + AT_rich Low_complexity Low_complexity 1 31 0 3 922 283 23 0 0 chr1 44292942 44292985 -152902447 - L1_Mus1 LINE L1 -1 6566 6524 3 922 663 78 0 0 chr1 44293104 44293194 -152902238 + (GAA)n Simple_repeat Simple_repeat 1 90 0 3 922 459 0 0 0 chr1 44293941 44293992 -152901440 + (TTTTA)n Simple_repeat Simple_repeat 3 53 0 3 922 753 335 44 33 chr1 44295152 44296032 -152899400 + RLTR4_MM-int LTR ERV1 1159 2110 -5446 3 922 861 168 0 16 chr1 44296034 44296216 -152899216 + GA-rich Low_complexity Low_complexity 2 180 0 3 922 549 299 52 22 chr1 44296261 44296547 -152898885 + RLTR4_MM-int LTR ERV1 1909 2371 -5230 3 922 477 316 6 0 chr1 44296820 44296997 -152898435 + RLTR4_MM-int LTR ERV1 2503 2680 -2010 3 922 5652 83 17 14 chr1 44297042 44297870 -152897562 + RLTR22_Mur LTR ERVK 2 831 -1017 3 922 1649 138 16 4 chr1 44298028 44298283 -152897149 + RLTR22_Mur LTR ERVK 1591 1848 0 3 922 795 332 58 37 chr1 44298299 44299035 -152896397 + RLTR4_MM-int LTR ERV1 3088 3866 -3912 3 922 228 216 0 0 chr1 44299742 44299793 -152895639 + B3A SINE B2 2 52 -146 3 922 373 320 73 118 chr1 44299795 44300177 -152895255 + RLTR40 LTR ERVK 203 567 -250 3 922 225 280 80 0 chr1 44300220 44300295 -152895137 + RLTR40 LTR ERVK 694 774 -43 3 922 313 253 13 0 chr1 44300824 44300899 -152894533 + RLTR18B LTR ERVK 1 76 -436 4 922 21 57 0 0 chr1 44301209 44301244 -152894188 + AT_rich Low_complexity Low_complexity 1 35 0 4 922 40 0 0 0 chr1 44301409 44301449 -152893983 + AT_rich Low_complexity Low_complexity 1 40 0 4 922 1165 255 17 56 chr1 44301504 44301912 -152893520 + L1_Mus1 LINE L1 554 945 -5712 4 115 36201 15 2 7 chr1 44301917 44307115 -152888317 + L1Md_A LINE L1 422 5586 -297 4 923 8737 19 0 0 chr1 44307115 44308111 -152887321 + L1Md_A LINE L1 5587 6582 0 4 923 10075 134 7 31 chr1 44308118 44308850 -152886582 + L1_Mus1 LINE L1 951 1682 -4201 4 923 197 33 33 0 chr1 44308850 44308880 -152886552 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 923 10075 163 15 67 chr1 44308880 44310802 -152884630 + L1_Mus1 LINE L1 1683 3481 -2402 4 923 9477 81 6 7 chr1 44310802 44312819 -152882613 + L1_Mus1 LINE L1 4549 6566 -1 4 923 12628 159 17 2 chr1 44312834 44314433 -152880999 + L1_Mus4 LINE L1 3470 5096 -787 4 923 3122 41 8 8 chr1 44314433 44314824 -152880608 + L1Md_F3 LINE L1 6194 6584 0 4 923 12628 119 18 6 chr1 44314824 44316047 -152879385 + L1_Mus4 LINE L1 5097 6327 -309 4 923 3113 73 0 5 chr1 44316047 44316445 -152878987 - MTA_Mm LTR MaLR 0 396 1 4 923 6909 93 19 9 chr1 44316445 44316740 -152878692 + L1_Mus4 LINE L1 6328 6633 -3 4 923 3797 132 27 74 chr1 44316809 44317580 -152877852 - RMER17A LTR ERVK -16 735 1 4 923 2712 120 133 17 chr1 44318243 44318784 -152876648 + L1_Mur1 LINE L1 4419 5022 -864 4 923 24 53 0 0 chr1 44319022 44319060 -152876372 + AT_rich Low_complexity Low_complexity 1 38 0 4 923 255 125 0 0 chr1 44319138 44319178 -152876254 + (TCC)n Simple_repeat Simple_repeat 3 42 0 4 923 1095 88 0 0 chr1 44319583 44319720 -152875712 - B1_Mus1 SINE Alu -10 138 2 4 923 10089 170 14 28 chr1 44320110 44322403 -152873029 + L1VL4 LINE L1 200 2815 -744 4 923 7308 164 22 14 chr1 44322402 44323409 -152872023 + Lx2 LINE L1 3902 4920 -957 4 923 243 0 0 0 chr1 44323409 44323436 -152871996 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 923 1057 93 0 0 chr1 44323436 44323575 -152871857 - B1_Mus2 SINE Alu -8 139 1 4 923 7308 164 22 14 chr1 44323575 44324016 -152871416 + Lx2 LINE L1 4921 5361 -516 4 923 35135 31 1 7 chr1 44324017 44329197 -152866235 + L1Md_A LINE L1 445 5586 -297 4 923 8846 13 0 0 chr1 44329197 44330192 -152865240 + L1Md_A LINE L1 5587 6581 -1 4 923 9893 25 2 0 chr1 44330192 44331405 -152864027 + L1_Mm LINE L1 4372 5586 -297 4 923 8353 37 0 0 chr1 44331405 44332401 -152863031 + L1Md_A LINE L1 5587 6582 0 4 923 6718 174 61 3 chr1 44332434 44333985 -152861447 + Lx2 LINE L1 5359 6997 0 4 923 810 212 71 34 chr1 44334436 44334613 -152860819 - L1_Rod LINE L1 -249 5598 5420 4 923 183 42 0 0 chr1 44334613 44334637 -152860795 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 923 810 212 71 34 chr1 44334637 44334698 -152860734 - L1_Rod LINE L1 -428 5419 5351 4 923 319 323 140 10 chr1 44334846 44335116 -152860316 + L1MC4a LINE L1 6699 7037 -1005 4 923 320 272 102 53 chr1 44335492 44335698 -152859734 + L3 LINE CR1 2089 2304 -2185 4 923 39305 6 1 0 chr1 44336139 44342485 -152852947 - L1Md_A LINE L1 0 6582 235 4 923 237 290 40 0 chr1 44343159 44343259 -152852173 - L1MA7 LINE L1 -84 6207 6104 4 923 309 89 0 0 chr1 44343734 44343779 -152851653 + (CAA)n Simple_repeat Simple_repeat 2 46 0 4 923 2311 60 44 19 chr1 44343996 44344317 -152851115 - L1_Mus2 LINE L1 0 6566 6238 4 923 5451 86 10 14 chr1 44344339 44345557 -152849875 + L1_Mus2 LINE L1 5021 6236 -330 4 923 1252 67 22 0 chr1 44345673 44345851 -152849581 - L1Md_F2 LINE L1 -509 5374 5193 4 923 1752 50 0 0 chr1 44345850 44346070 -152849362 + L1Md_F2 LINE L1 5367 5586 -297 4 923 7760 52 20 2 chr1 44346070 44347046 -152848386 + L1Md_F2 LINE L1 5587 6580 -2 4 923 2692 94 92 22 chr1 44347549 44347993 -152847439 + IAPLTR2_Mm LTR ERVK 1 475 0 4 923 1234 70 10 75 chr1 44347994 44348194 -152847238 + IAPEz-int LTR ERVK 9 195 -6286 4 923 227 321 0 0 chr1 44348194 44348247 -152847185 + RLTR27 LTR ERVK 223 275 -34 4 923 3715 51 6 18 chr1 44348247 44348748 -152846684 + IAPEz-int LTR ERVK 168 662 -5819 4 923 424 38 0 0 chr1 44348748 44348801 -152846631 + IAPEz-int LTR ERVK 1359 1411 -5070 4 923 1716 119 4 4 chr1 44348800 44349062 -152846370 + IAPEz-int LTR ERVK 2236 2497 -5183 4 923 886 73 24 0 chr1 44349059 44349182 -152846250 + IAPEz-int LTR ERVK 4785 4910 -2770 4 923 25117 17 2 0 chr1 44349182 44352132 -152843300 + IAPEz-int LTR ERVK 3525 6481 0 4 923 2619 102 70 56 chr1 44352132 44352600 -152842832 + IAPLTR2_Mm LTR ERVK 1 475 0 4 923 181 268 49 0 chr1 44353139 44353180 -152842252 + MIR SINE MIR 202 244 -18 4 923 741 281 42 15 chr1 44353408 44353668 -152841764 - Lx6 LINE L1 0 7460 7194 4 923 383 152 65 0 chr1 44353656 44353748 -152841684 + MusHAL1 LINE L1 1566 1663 -1049 4 923 1014 93 29 0 chr1 44353938 44354078 -152841354 - B1_Mus1 SINE Alu 0 148 5 4 923 180 0 0 0 chr1 44354207 44354227 -152841205 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 923 1880 337 98 27 chr1 44354636 44356010 -152839422 - Lx8 LINE L1 -277 7196 5726 4 923 667 321 44 24 chr1 44356009 44356503 -152838929 + L1_Mur3 LINE L1 4730 5246 -631 4 923 26 0 0 0 chr1 44357318 44357344 -152838088 + AT_rich Low_complexity Low_complexity 1 26 0 4 923 25 90 0 0 chr1 44357490 44357557 -152837875 + AT_rich Low_complexity Low_complexity 1 67 0 4 923 8175 130 16 5 chr1 44358454 44359880 -152835552 + Lx3B LINE L1 5532 6969 -4 4 923 1504 143 34 8 chr1 44360110 44360378 -152835054 + RMER6-int LTR ERVK 2243 2517 -660 4 923 230 246 0 32 chr1 44360378 44360441 -152834991 + LSU-rRNA_Hsa rRNA rRNA 1777 1837 -3198 4 923 608 96 250 0 chr1 44360454 44360590 -152834842 + RMER6-int LTR ERVK 2593 2762 -415 4 923 7738 52 2 2 chr1 44360590 44361609 -152833823 - L1Md_F2 LINE L1 0 6582 5587 4 923 33532 68 2 0 chr1 44361635 44367099 -152828333 - L1Md_F2 LINE L1 0 6582 1108 4 923 7703 95 8 0 chr1 44367067 44368210 -152827222 - L1Md_F2 LINE L1 -5411 1205 98 4 923 861 192 13 0 chr1 44368584 44368735 -152826697 + URR1B DNA MER1_type 3 155 -70 4 923 30 45 0 0 chr1 44368735 44368779 -152826653 + AT_rich Low_complexity Low_complexity 1 44 0 4 923 335 231 86 0 chr1 44368783 44368900 -152826532 + Lx7 LINE L1 5682 5808 -1888 4 923 3348 122 9 2 chr1 44368903 44369452 -152825980 + L1_Mm LINE L1 4168 4720 -1163 4 923 252 347 29 68 chr1 44369678 44369885 -152825547 + RLTR41 LTR ERV1 186 384 -62 4 923 812 116 52 52 chr1 44369939 44370094 -152825338 + L1_Mm LINE L1 4715 4869 -1014 4 923 14353 179 35 24 chr1 44370098 44372718 -152822714 + Lx2A1 LINE L1 2555 5211 -675 4 923 2918 27 0 0 chr1 44372718 44373050 -152822382 + IAPEY3_LTR LTR ERVK 1 332 0 4 923 14353 179 35 24 chr1 44373050 44373113 -152822319 + Lx2A1 LINE L1 5212 5267 -619 4 923 1549 42 21 0 chr1 44373113 44373302 -152822130 + B2_Mm1a SINE B2 1 193 0 4 923 14353 152 32 12 chr1 44373302 44374350 -152821082 + Lx2A1 LINE L1 5268 6335 -673 4 923 1803 168 38 6 chr1 44374351 44374716 -152820716 - MYSERV16_I-int LTR ERVK -403 1923 1547 4 923 5097 43 29 1 chr1 44374716 44375371 -152820061 + L1_Mus1 LINE L1 5874 6546 -21 4 923 430 68 100 22 chr1 44375374 44375464 -152819968 - MYSERV16_I-int LTR ERVK -761 1565 1469 4 923 417 39 0 0 chr1 44375468 44375519 -152819913 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 4 923 1001 139 0 16 chr1 44375519 44375702 -152819730 + CT-rich Low_complexity Low_complexity 1 180 0 4 923 932 96 0 0 chr1 44375704 44375839 -152819593 - L1_Mus2 LINE L1 -7 6559 6425 4 923 1161 168 69 38 chr1 44375893 44376251 -152819181 - MYSERV16_I-int LTR ERVK -1015 1311 1067 4 923 285 131 0 0 chr1 44376273 44376334 -152819098 + (T)n Simple_repeat Simple_repeat 1 61 0 4 923 1015 83 27 14 chr1 44376336 44376482 -152818950 - B1_Mus1 SINE Alu 0 148 1 4 923 832 204 47 24 chr1 44376484 44376695 -152818737 - MYSERV16_I-int LTR ERVK -1526 800 585 4 923 1919 215 66 8 chr1 44376706 44377218 -152818214 - MYSERV16_I-int LTR ERVK -1784 542 1 4 923 5130 148 20 11 chr1 44377356 44377777 -152817655 - Lx3B LINE L1 -1244 4633 4197 4 923 3101 12 3 0 chr1 44377777 44378122 -152817310 - ORR1A0 LTR MaLR 0 346 1 4 923 5130 152 17 10 chr1 44378122 44378953 -152816479 - Lx3B LINE L1 -1681 4196 3645 4 923 225 0 0 0 chr1 44379882 44379907 -152815525 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 923 195 151 42 21 chr1 44381592 44381687 -152813745 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 923 2188 173 27 4 chr1 44382392 44382889 -152812543 + Lx3B LINE L1 651 1041 -5943 4 923 11332 131 67 30 chr1 44382905 44385136 -152810296 + Lx3B LINE L1 2931 5243 -643 4 923 4516 126 30 50 chr1 44385118 44385679 -152809753 + Lx3B LINE L1 5612 6141 -832 4 923 4321 141 147 56 chr1 44385679 44386615 -152808817 - RLTR13D2 LTR ERVK -1 1022 1 4 923 4516 126 30 50 chr1 44386615 44386896 -152808536 + Lx3B LINE L1 6142 6437 -536 4 923 4069 115 2 0 chr1 44388137 44388737 -152806695 - Lx LINE L1 -146 6508 5908 4 923 348 175 0 0 chr1 44388737 44388794 -152806638 - RLTR9E LTR ERVK 0 393 337 4 923 1211 94 0 6 chr1 44388787 44388958 -152806474 - RLTR9E LTR ERVK -239 170 1 4 923 2500 145 12 2 chr1 44388990 44389412 -152806020 - Lx LINE L1 -2 5881 5456 4 923 913 176 4 111 chr1 44389410 44389610 -152805822 - L1_Mur1 LINE L1 -1204 4682 4509 4 923 3025 66 10 20 chr1 44389610 44390014 -152805418 + MTB LTR MaLR 1 400 0 4 923 913 176 4 111 chr1 44390014 44390075 -152805357 - L1_Mur1 LINE L1 -1378 4508 4449 4 923 663 48 0 0 chr1 44390076 44390159 -152805273 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 923 1568 143 0 67 chr1 44390174 44390459 -152804973 - ORR1A4 LTR MaLR -63 266 1 4 923 5272 143 75 100 chr1 44390459 44391602 -152803830 - ORR1A4-int LTR MaLR 0 1963 849 4 923 7406 153 56 66 chr1 44391605 44393405 -152802027 - L1_Mur1 LINE L1 -1430 4456 2675 4 923 1834 168 107 9 chr1 44393413 44393841 -152801591 + Lx4B LINE L1 6548 7010 -48 4 923 461 306 56 0 chr1 44393973 44394081 -152801351 + RSINE1 SINE B4 7 120 -45 4 923 1241 156 32 14 chr1 44395182 44395403 -152800029 - URR1B DNA MER1_type 0 225 1 4 923 1055 230 9 9 chr1 44396005 44396216 -152799216 - B3 SINE B2 0 216 6 4 923 181 352 90 27 chr1 44396560 44396671 -152798761 - L2b LINE L2 -17 3358 3241 4 923 279 118 20 0 chr1 44396744 44396795 -152798637 - L1_Mur2 LINE L1 -1100 4777 4726 4 923 216 130 0 0 chr1 44396795 44396841 -152798591 + (T)n Simple_repeat Simple_repeat 1 46 0 4 923 1188 109 0 0 chr1 44396841 44397025 -152798407 - L1_Mus2 LINE L1 -1147 4736 4553 4 923 7454 86 5 1 chr1 44397025 44398782 -152796650 + L1_Mus2 LINE L1 4781 6545 -21 4 923 225 0 0 0 chr1 44399064 44399089 -152796343 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 923 4562 52 18 0 chr1 44399864 44400436 -152794996 + L1Md_F3 LINE L1 5989 6570 -14 4 923 2609 146 2 24 chr1 44401148 44401611 -152793821 - RLTR11B LTR ERVK 0 453 1 4 923 463 321 110 29 chr1 44403013 44403321 -152792111 + Lx8 LINE L1 6114 6446 -1027 4 923 274 288 127 70 chr1 44403329 44403542 -152791890 + MLT1D LTR MaLR 267 491 -14 4 923 223 330 77 39 chr1 44403550 44403654 -152791778 + L2a LINE L2 3082 3189 -237 4 923 600 277 12 55 chr1 44403766 44403930 -152791502 - B3A SINE B2 -33 165 9 4 923 611 220 133 0 chr1 44404444 44404617 -152790815 - ORR1D-int LTR MaLR -17 1353 1158 4 923 35116 33 2 7 chr1 44405394 44410739 -152784693 + L1Md_T LINE L1 273 5586 -297 4 923 8331 40 0 0 chr1 44410740 44411735 -152783697 + L1Md_T LINE L1 5588 6582 0 4 923 1172 119 251 22 chr1 44411871 44412150 -152783282 + RMER16-int LTR ERVK 2999 3340 -2066 4 923 4724 51 0 2 chr1 44412150 44412737 -152782695 - L1Md_F2 LINE L1 0 6582 5997 4 923 321 233 7 89 chr1 44412737 44412759 -152782673 + RMER16-int LTR ERVK 5503 5524 -1882 4 923 5221 167 26 3 chr1 44412762 44413673 -152781759 + Lx4A LINE L1 6127 7058 0 4 923 24 0 0 0 chr1 44413695 44413719 -152781713 + AT_rich Low_complexity Low_complexity 1 24 0 4 923 280 312 0 0 chr1 44413766 44413846 -152781586 - Lx9 LINE L1 -612 7032 6953 4 923 321 152 52 58 chr1 44413945 44414192 -152781240 + (TA)n Simple_repeat Simple_repeat 1 245 0 4 923 275 225 57 34 chr1 44414200 44414375 -152781057 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 4 923 1129 268 50 30 chr1 44414403 44414849 -152780583 + RLTR20B3 LTR ERVK 21 512 -65 5 923 4664 159 25 34 chr1 44415682 44416653 -152778779 + MYSERV16_I-int LTR ERVK 1 1349 -1493 5 923 264 243 70 50 chr1 44416665 44416767 -152778665 + RMER4A LTR ERVK 335 422 -44 5 923 999 201 48 7 chr1 44416768 44417038 -152778394 + MYSERV16_I-int LTR ERVK 1056 1336 -990 5 923 2320 116 52 70 chr1 44417038 44417522 -152777910 + IAPLTR2_Mm LTR ERVK 1 475 0 5 923 299 151 82 0 chr1 44417524 44417597 -152777835 + IAPEz-int LTR ERVK 3 81 -1906 5 923 428 67 129 119 chr1 44417596 44417697 -152777735 + IAPEz-int LTR ERVK 22 123 -6358 5 923 248 244 0 0 chr1 44417697 44417742 -152777690 + RLTR27 LTR ERVK 231 275 -34 5 923 226 321 0 0 chr1 44417770 44417823 -152777609 + RLTR27 LTR ERVK 223 275 -34 5 923 3344 64 4 16 chr1 44417823 44418401 -152777031 + IAPEz-int LTR ERVK 168 662 -5819 5 923 2065 75 0 0 chr1 44418401 44418679 -152776753 + IAPEz-int LTR ERVK 1359 1636 -4845 5 923 5700 47 3 29 chr1 44418678 44419444 -152775988 + IAPEz-int LTR ERVK 5736 6481 0 5 923 2339 113 52 70 chr1 44419444 44419928 -152775504 + IAPLTR2_Mm LTR ERVK 1 475 0 5 923 4076 182 30 13 chr1 44419931 44420856 -152774576 + MYSERV16_I-int LTR ERVK 1333 2841 -1 5 923 1941 228 47 49 chr1 44420861 44421326 -152774106 + RLTR20B3 LTR ERVK 21 482 -95 5 923 330 67 0 0 chr1 44421326 44421371 -152774061 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 923 1941 228 47 49 chr1 44421371 44421418 -152774014 + RLTR20B3 LTR ERVK 483 532 -45 5 923 362 209 39 34 chr1 44421436 44421614 -152773818 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 5 923 494 254 54 13 chr1 44421717 44421867 -152773565 - MT2A LTR ERVL -74 527 349 5 923 304 167 0 0 chr1 44421902 44421950 -152773482 - ORR1C2 LTR MaLR -336 48 1 5 923 541 313 52 9 chr1 44422030 44422259 -152773173 + Lx9 LINE L1 7052 7290 -354 5 923 25 31 0 0 chr1 44422400 44422432 -152773000 + AT_rich Low_complexity Low_complexity 1 32 0 5 923 5872 217 42 15 chr1 44422537 44423960 -152771472 - Lx5 LINE L1 0 7050 5589 5 923 3701 33 14 0 chr1 44423960 44424390 -152771042 - RLTR10C LTR ERVK 0 436 1 5 923 5833 27 0 0 chr1 44424390 44425085 -152770347 - MMERVK10C-int LTR ERVK 0 7581 6887 5 923 456 19 0 0 chr1 44425360 44425413 -152770019 + (CTTTG)n Simple_repeat Simple_repeat 2 54 0 5 923 752 112 0 0 chr1 44425424 44425531 -152769901 - B2_Mm2 SINE B2 -88 107 1 5 923 39333 7 0 1 chr1 44425687 44432477 -152762955 - L1Md_A LINE L1 0 6582 1 5 923 1913 71 0 0 chr1 44432488 44432743 -152762689 - MMERVK10C-int LTR ERVK -681 6900 6646 5 115 40099 40 0 1 chr1 44432729 44437673 -152757759 - MMERVK10C-int LTR ERVK -1771 5810 870 5 924 2451 100 53 3 chr1 44437671 44438051 -152757381 - MMERVK10C-int LTR ERVK -7182 399 1 5 924 3698 35 7 0 chr1 44438051 44438484 -152756948 - RLTR10C LTR ERVK 0 436 1 5 924 770 113 9 0 chr1 44438484 44438599 -152756833 - Lx5 LINE L1 -289 5588 5473 5 924 568 174 114 0 chr1 44438597 44438729 -152756703 + Lx5 LINE L1 5333 5479 -398 5 924 426 39 0 0 chr1 44439785 44439837 -152755595 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 924 31674 25 0 0 chr1 44439970 44444557 -152750875 - L1Md_T LINE L1 0 6582 1996 5 924 705 101 13 86 chr1 44444566 44444717 -152750715 - RMER16-int LTR ERVK -2424 2982 2843 5 924 989 186 10 20 chr1 44444741 44444939 -152750493 - RMER16-int LTR ERVK -2541 2865 2670 5 924 1447 236 121 36 chr1 44444940 44445395 -152750037 + RMER16 LTR ERVK 2 533 0 5 924 2207 124 13 16 chr1 44445396 44445772 -152749660 - RMER16-int LTR ERVK -2732 2674 2300 5 924 3804 102 27 4 chr1 44445811 44446362 -152749070 + LTRIS2 LTR ERV1 1 564 0 5 924 874 148 100 6 chr1 44446911 44447081 -152748351 + RMER16-int LTR ERVK 141 326 -5080 5 924 3850 123 40 17 chr1 44447084 44447735 -152747697 + RMER16-int LTR ERVK 780 1445 -3961 5 924 1594 209 102 6 chr1 44447721 44448355 -152747077 + MuRRS4-int LTR ERV1 750 1444 -3619 5 924 510 17 0 0 chr1 44448362 44448421 -152747011 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 924 2277 102 12 29 chr1 44448421 44448893 -152746539 + MuRRS4-int LTR ERV1 1710 2263 -2800 5 924 5412 105 19 3 chr1 44448869 44450361 -152745071 + MuRRS4-int LTR ERV1 2389 3997 -1066 5 924 311 373 4 18 chr1 44450382 44450611 -152744821 + MuRRS4-int LTR ERV1 4046 4271 -792 5 924 839 234 31 4 chr1 44450602 44450830 -152744602 + MuRRS4-int LTR ERV1 4788 5021 -42 5 924 3710 110 37 2 chr1 44450831 44451376 -152744056 + LTRIS2 LTR ERV1 1 564 0 5 924 2439 194 81 63 chr1 44451376 44452413 -152743019 - RMER16-int LTR ERVK -3660 3584 1570 5 924 464 297 92 11 chr1 44452523 44452707 -152742725 - RLTR41 LTR ERV1 -247 199 1 5 924 891 192 0 48 chr1 44452712 44452898 -152742534 - RMER16-int LTR ERVK -3894 1512 1336 5 924 7052 107 80 10 chr1 44452969 44454208 -152741224 - RMER16-int LTR ERVK -3992 1414 89 5 924 884 72 0 8 chr1 44454234 44454360 -152741072 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 5 924 1149 68 0 0 chr1 44454360 44454506 -152740926 - B1_Mus1 SINE Alu -2 146 1 5 924 1058 160 14 9 chr1 44455328 44455542 -152739890 - L1_Mm LINE L1 -803 5080 4866 5 924 6583 89 11 3 chr1 44455540 44456491 -152738941 + Lx LINE L1 5690 6647 -7 5 924 3263 234 136 26 chr1 44457335 44458383 -152737049 - Lx7 LINE L1 0 7696 6534 5 924 2910 211 44 10 chr1 44458390 44459122 -152736310 - L1_Mur3 LINE L1 -1692 4188 3432 5 924 1583 219 74 3 chr1 44459186 44459552 -152735880 - ORR1B1 LTR MaLR -2 392 1 5 924 1759 304 91 26 chr1 44459557 44460401 -152735031 + Lx8 LINE L1 6355 7253 -220 5 924 1300 214 38 12 chr1 44460428 44460554 -152734878 - L1_Mur3 LINE L1 -3694 2183 2053 5 924 441 0 0 0 chr1 44460554 44460603 -152734829 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 924 1300 214 38 12 chr1 44460603 44460817 -152734615 - L1_Mur3 LINE L1 -3825 2052 1834 5 924 11235 96 38 31 chr1 44460884 44462962 -152732470 + L1VL4 LINE L1 409 2513 -1046 5 924 384 22 0 0 chr1 44462962 44463007 -152732425 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 5 924 11235 87 49 30 chr1 44463007 44463323 -152732109 + L1VL4 LINE L1 2514 2819 -740 5 924 341 294 101 3 chr1 44463371 44463518 -152731914 + ID_B1 SINE B4 66 222 -2 5 924 224 100 25 0 chr1 44463791 44463831 -152731601 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 924 410 236 132 64 chr1 44464226 44464461 -152730971 - RMER21B LTR ERV1 -275 567 317 5 924 231 300 86 12 chr1 44464983 44465145 -152730287 - L1MD2 LINE L1 -10 6349 6176 5 924 180 77 0 0 chr1 44465153 44465179 -152730253 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 924 690 275 129 71 chr1 44465221 44465486 -152729946 + RLTR28B LTR ERVL 1 303 -178 5 924 230 0 0 32 chr1 44465486 44465517 -152729915 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 924 3473 23 2 5 chr1 44465523 44465920 -152729512 - MTA_Mm LTR MaLR 0 396 1 5 924 690 216 134 53 chr1 44465920 44466061 -152729371 + RLTR28B LTR ERVL 304 508 -16 5 924 1865 119 9 59 chr1 44466349 44466688 -152728744 + RLTRETN_Mm LTR ERVK 1 322 0 5 924 226 176 19 19 chr1 44467509 44467561 -152727871 + CT-rich Low_complexity Low_complexity 2 53 0 5 924 547 257 21 86 chr1 44468038 44468272 -152727160 + MYSERV6-int LTR ERVK 7269 7487 -1472 5 924 377 228 100 24 chr1 44469718 44469859 -152725573 + RLTR19-int LTR ERVK 3859 3969 -2168 5 924 714 196 67 11 chr1 44469859 44470120 -152725312 + RMER6C LTR ERVK 1 322 -368 5 924 36317 41 0 3 chr1 44470120 44476093 -152719339 - L1Md_T LINE L1 -248 6337 285 5 924 204 67 0 0 chr1 44476127 44476157 -152719275 + (T)n Simple_repeat Simple_repeat 1 30 0 5 924 296 305 49 13 chr1 44476199 44476425 -152719007 - L1M4 LINE L1 -2116 4528 4295 5 924 378 329 59 70 chr1 44476526 44477069 -152718363 - Lx9 LINE L1 -35 7609 7073 5 924 1365 19 0 0 chr1 44477072 44477234 -152718198 + L1Md_F3 LINE L1 5425 5586 -297 5 924 8384 26 3 3 chr1 44477234 44478218 -152717214 + L1Md_F3 LINE L1 5587 6570 -14 5 924 404 265 70 60 chr1 44478355 44478556 -152716876 - L1M4 LINE L1 -2569 4075 3873 5 924 651 319 44 36 chr1 44478573 44478880 -152716552 + RLTR20D LTR ERVK 51 463 -105 5 924 441 0 0 0 chr1 44478880 44478929 -152716503 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 924 651 277 60 33 chr1 44478929 44479024 -152716408 + RLTR20D LTR ERVK 464 568 0 5 924 243 283 0 16 chr1 44479224 44479285 -152716147 - B1F2 SINE Alu -88 61 2 5 924 276 100 0 0 chr1 44479342 44479382 -152716050 + (T)n Simple_repeat Simple_repeat 1 40 0 5 924 438 280 81 48 chr1 44479492 44479889 -152715543 - L1M4 LINE L1 -2997 3647 3238 5 924 682 249 144 94 chr1 44479931 44480260 -152715172 - RLTR12B LTR ERVK -43 485 164 5 924 1362 82 6 0 chr1 44480260 44480443 -152714989 - B2_Mm1t SINE B2 -9 184 1 5 924 682 249 144 94 chr1 44480443 44480508 -152714924 - RLTR12B LTR ERVK -365 163 71 5 924 330 222 121 11 chr1 44480982 44481113 -152714319 - L1MA8 LINE L1 -362 5929 5715 5 924 290 234 0 61 chr1 44481316 44481345 -152714087 - Lx7 LINE L1 -388 7308 7281 5 924 3467 25 2 132 chr1 44481345 44481846 -152713586 + RLTR10C LTR ERVK 1 436 0 5 924 290 234 0 61 chr1 44481846 44481898 -152713534 - Lx7 LINE L1 -416 7280 7232 5 924 311 292 0 0 chr1 44481897 44482003 -152713429 - L1MA8 LINE L1 -823 5477 5372 5 924 263 296 24 8 chr1 44482004 44482130 -152713302 - L1M4 LINE L1 -6377 165 38 5 924 406 274 231 0 chr1 44482331 44482448 -152712984 - RSINE1 SINE B4 -19 146 3 5 924 689 193 19 26 chr1 44482979 44483133 -152712299 - Lx7 LINE L1 -406 7290 7138 5 924 623 255 70 40 chr1 44483251 44483451 -152711981 - ID_B1 SINE B4 -5 219 14 5 924 302 250 83 0 chr1 44483494 44483602 -152711830 - Lx7 LINE L1 -20 7676 7560 5 924 214 286 19 0 chr1 44483605 44483710 -152711722 + A-rich Low_complexity Low_complexity 3 109 0 5 924 28995 74 5 2 chr1 44483793 44487942 -152707490 + L1Md_F2 LINE L1 1425 5585 -298 5 924 7162 85 9 9 chr1 44487943 44488939 -152706493 + L1Md_F2 LINE L1 5587 6582 0 5 924 662 251 0 33 chr1 44488939 44489120 -152706312 - Lx7 LINE L1 -378 7318 7144 5 924 1255 248 98 32 chr1 44489479 44489856 -152705576 + RLTR28B LTR ERVL 4 406 -75 5 924 6755 66 33 7 chr1 44489856 44490761 -152704671 + RLTR13B3 LTR ERVK 1 929 0 5 924 1255 248 98 32 chr1 44490761 44490821 -152704611 + RLTR28B LTR ERVL 407 470 -11 5 924 3350 82 28 2 chr1 44491755 44492219 -152703213 + Lx3_Mus LINE L1 6526 7001 -8 5 924 22 0 0 0 chr1 44492252 44492274 -152703158 + AT_rich Low_complexity Low_complexity 1 22 0 5 924 181 364 43 54 chr1 44492547 44492640 -152702792 + L2a LINE L2 3326 3417 -9 5 924 21 36 0 0 chr1 44493418 44493446 -152701986 + AT_rich Low_complexity Low_complexity 1 28 0 5 924 926 79 13 7 chr1 44493563 44493715 -152701717 - L1_Mus3 LINE L1 0 6638 6486 5 924 231 36 0 0 chr1 44494605 44494633 -152700799 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 924 750 296 49 10 chr1 44495184 44495389 -152700043 + B3 SINE B2 1 213 -3 5 924 21 0 0 0 chr1 44495535 44495556 -152699876 + AT_rich Low_complexity Low_complexity 1 21 0 5 924 3215 35 30 0 chr1 44495638 44496037 -152699395 + IAPLTR2a LTR ERVK 1 411 0 5 924 405 200 20 10 chr1 44496038 44496139 -152699293 + IAPEz-int LTR ERVK 9 110 -6371 5 924 714 86 0 0 chr1 44496796 44496847 -152698585 + (GGA)n Simple_repeat Simple_repeat 3 53 0 5 924 1238 46 23 0 chr1 44496847 44497021 -152698411 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 924 714 86 0 0 chr1 44497021 44497074 -152698358 + (GGA)n Simple_repeat Simple_repeat 3 55 0 5 924 1422 175 21 149 chr1 44497081 44497511 -152697921 - RMER17C LTR ERVK -34 376 2 5 924 1165 188 209 10 chr1 44497651 44497957 -152697475 - ORR1B2 LTR MaLR 0 367 1 5 924 577 287 78 21 chr1 44498935 44499127 -152696305 + RLTR18 LTR ERVK 383 585 -31 5 924 676 115 8 0 chr1 44499129 44499251 -152696181 - MusHAL1 LINE L1 -5 2707 2585 5 924 3048 102 142 47 chr1 44499249 44499462 -152695970 - MusHAL1 LINE L1 -816 1896 1619 5 924 1091 116 0 0 chr1 44499462 44499609 -152695823 - B1_Mus1 SINE Alu 0 148 2 5 924 3048 102 142 47 chr1 44499609 44499994 -152695438 - MusHAL1 LINE L1 -1094 1618 1241 5 924 7245 96 58 4 chr1 44500000 44501809 -152693623 - L1VL4 LINE L1 -1475 2084 194 1 924 266 250 15 45 chr1 44501810 44501877 -152693555 + RLTR18 LTR ERVK 544 608 -8 2 924 309 51 0 0 chr1 44501904 44501943 -152693489 + (TAAG)n Simple_repeat Simple_repeat 2 40 0 3 924 4317 101 24 3 chr1 44503337 44504333 -152691099 + Lx3A LINE L1 5258 6268 -713 4 924 12886 165 16 14 chr1 44504342 44507781 -152687651 + Lx LINE L1 3210 6654 0 5 924 209 173 0 19 chr1 44507783 44507821 -152687611 + GA-rich Low_complexity Low_complexity 4 40 0 6 924 285 51 0 0 chr1 44507821 44507860 -152687572 + (TAGG)n Simple_repeat Simple_repeat 2 40 0 7 924 209 173 0 19 chr1 44507860 44507874 -152687558 + polypurine Low_complexity Low_complexity 41 54 0 8 924 192 125 0 0 chr1 44509502 44509534 -152685898 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 924 364 337 46 10 chr1 44509887 44510082 -152685350 - L1MC1 LINE L1 -9 6324 6123 1 924 344 321 52 30 chr1 44510089 44510224 -152685208 + ORR1D1 LTR MaLR 1 138 -241 1 924 350 188 59 50 chr1 44510226 44510252 -152685180 + ORR1D1 LTR MaLR 269 298 -72 1 924 1443 192 117 37 chr1 44510252 44510604 -152684828 + ORR1C2 LTR MaLR 5 384 0 1 924 376 138 23 8 chr1 44510604 44510678 -152684754 + ORR1D1 LTR MaLR 299 374 0 1 924 503 309 12 24 chr1 44510680 44510849 -152684583 + MTE2b LTR MaLR 213 379 0 1 924 516 239 169 28 chr1 44510912 44511196 -152684236 - L1MC1 LINE L1 -276 6057 5734 1 924 272 271 21 10 chr1 44511219 44511316 -152684116 - L1MC1 LINE L1 -2383 5612 5515 1 924 395 220 8 0 chr1 44511548 44511666 -152683766 - Lx9 LINE L1 0 7644 7526 1 924 605 230 0 0 chr1 44511716 44511851 -152683581 - Lx9 LINE L1 -731 6913 6779 1 924 294 73 0 0 chr1 44511873 44511914 -152683518 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 924 3226 250 77 95 chr1 44511917 44513313 -152682119 - Lx9 LINE L1 -161 7483 6113 1 924 271 299 86 32 chr1 44513323 44513544 -152681888 - L1MC1 LINE L1 -888 5258 5026 1 924 324 0 0 0 chr1 44513599 44513635 -152681797 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 924 684 77 0 0 chr1 44513635 44513738 -152681694 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 924 752 279 80 29 chr1 44513738 44514325 -152681107 - L1MC1 LINE L1 -1214 4932 4316 1 924 526 311 198 18 chr1 44516251 44516579 -152678853 - LTR40a LTR ERVL -132 387 1 1 924 253 325 26 0 chr1 44516859 44516936 -152678496 - PB1D9 SINE Alu -10 110 32 2 924 1022 17 0 72 chr1 44517776 44517970 -152677462 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 924 427 0 96 0 chr1 44517973 44518056 -152677376 + (TTCCC)n Simple_repeat Simple_repeat 2 92 0 2 924 953 0 0 83 chr1 44518059 44518252 -152677180 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2 924 312 299 100 17 chr1 44518937 44519117 -152676315 + MLT1B LTR MaLR 59 253 -137 2 924 426 20 0 0 chr1 44519335 44519386 -152676046 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 924 2325 174 49 19 chr1 44519912 44520608 -152674824 - RMER19B LTR ERVK -106 796 55 2 924 356 211 133 0 chr1 44521136 44521226 -152674206 - RMER19B LTR ERVK -800 102 1 2 924 437 348 18 36 chr1 44521588 44521755 -152673677 + RSINE1 SINE B4 2 165 0 2 924 208 239 0 0 chr1 44521757 44521803 -152673629 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 2 924 752 53 0 0 chr1 44522004 44522099 -152673333 + B1_Mm SINE Alu 43 137 -10 2 924 342 61 0 0 chr1 44522099 44522148 -152673284 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 3 924 554 252 0 22 chr1 44522187 44522321 -152673111 + B1_Mur2 SINE Alu 17 147 -2 3 924 207 167 0 0 chr1 44522744 44522786 -152672646 + CT-rich Low_complexity Low_complexity 2 43 0 3 924 29 28 0 0 chr1 44523105 44523141 -152672291 + AT_rich Low_complexity Low_complexity 1 36 0 3 924 521 157 0 24 chr1 44523466 44523551 -152671881 - B1_Mur4 SINE Alu -2 148 66 3 924 609 83 0 0 chr1 44524665 44524749 -152670683 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 924 1025 318 93 38 chr1 44525456 44525930 -152669502 - MLT1D LTR MaLR -5 500 1 3 924 3441 20 8 0 chr1 44526103 44526496 -152668936 - MTA_Mm LTR MaLR 0 396 1 3 924 21 36 0 0 chr1 44527036 44527064 -152668368 + AT_rich Low_complexity Low_complexity 1 28 0 3 924 405 299 126 0 chr1 44527136 44527263 -152668169 + RSINE1 SINE B4 3 145 -20 3 924 4263 146 41 3 chr1 44527286 44527988 -152667444 + Lx4A LINE L1 6330 7058 0 4 924 261 0 0 0 chr1 44528089 44528118 -152667314 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 924 423 0 0 0 chr1 44528118 44528164 -152667268 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 924 186 143 0 0 chr1 44528180 44528215 -152667217 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 924 1560 66 0 0 chr1 44528483 44528749 -152666683 - L1_Mus1 LINE L1 0 6567 6361 4 924 311 238 74 67 chr1 44528818 44528953 -152666479 + RNLTR23 LTR ERVK 479 614 -28 4 924 293 336 9 0 chr1 44529037 44529153 -152666279 - PB1D10 SINE Alu 0 117 1 4 924 373 138 100 0 chr1 44529171 44529251 -152666181 + Lx LINE L1 6509 6596 -58 4 924 2347 48 0 0 chr1 44529251 44529546 -152665886 + L1Md_F2 LINE L1 5291 5585 -298 4 924 8037 50 1 1 chr1 44529547 44530532 -152664900 + L1Md_F2 LINE L1 5587 6571 -11 4 924 550 262 34 7 chr1 44530594 44530740 -152664692 + B3 SINE B2 61 210 -6 4 924 29 0 0 0 chr1 44530748 44530777 -152664655 + AT_rich Low_complexity Low_complexity 1 29 0 5 924 386 322 20 6 chr1 44530781 44530927 -152664505 + B1F1 SINE Alu 2 149 0 5 924 660 26 0 0 chr1 44531155 44531233 -152664199 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 924 1048 264 74 7 chr1 44531403 44531712 -152663720 - Lx8 LINE L1 -723 6750 6421 5 924 10517 6 2 0 chr1 44531725 44533678 -152661754 - L1Md_A LINE L1 0 6582 4625 5 924 24315 12 0 0 chr1 44533666 44537300 -152658132 - L1Md_T LINE L1 0 6582 2949 5 924 33773 37 1 0 chr1 44537300 44543593 -152651839 + L1Md_T LINE L1 1 5589 -297 5 924 9017 6 0 0 chr1 44543593 44544623 -152650809 + L1Md_T LINE L1 5590 6585 0 5 924 4284 54 41 9 chr1 44544623 44545193 -152650239 + L1Md_F2 LINE L1 6005 6582 0 5 924 1068 115 0 0 chr1 44545193 44545341 -152650091 + B1_Mus1 SINE Alu 1 148 0 5 924 522 159 0 0 chr1 44545341 44545400 -152650032 + A-rich Low_complexity Low_complexity 47 105 0 5 924 270 0 0 0 chr1 44545477 44545507 -152649925 + (A)n Simple_repeat Simple_repeat 1 30 0 6 924 14644 9 0 1 chr1 44545507 44548650 -152646782 - L1Md_A LINE L1 -2919 2964 1 6 924 229 26 53 0 chr1 44548654 44548692 -152646740 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 924 425 303 88 28 chr1 44548705 44548897 -152646535 - Lx8 LINE L1 -1076 6397 6196 5 924 279 0 0 0 chr1 44548897 44548928 -152646504 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 924 425 303 88 28 chr1 44548928 44548952 -152646480 - Lx8 LINE L1 -1278 6195 6169 5 924 23 78 0 0 chr1 44548982 44549033 -152646399 + AT_rich Low_complexity Low_complexity 1 51 0 6 924 1026 69 0 0 chr1 44549915 44550046 -152645386 + BGLII_B LTR ERVK 10 140 -301 6 924 3048 110 10 2 chr1 44550046 44550545 -152644887 + L1_Mur1 LINE L1 2134 2636 -3250 6 924 1831 220 20 45 chr1 44550551 44551027 -152644405 + RLTR26 LTR ERVK 2 502 -140 6 924 273 217 17 0 chr1 44551180 44551240 -152644192 + RLTR26 LTR ERVK 563 623 -19 6 924 14015 143 30 45 chr1 44551244 44554153 -152641279 + Lx3C LINE L1 2631 5496 -390 6 924 28063 72 12 33 chr1 44554149 44559596 -152635836 + L1Md_F2 LINE L1 206 5586 -297 6 924 8155 38 8 5 chr1 44559596 44560589 -152634843 + L1Md_F2 LINE L1 5587 6582 0 6 924 6940 134 66 19 chr1 44560589 44561932 -152633500 + Lx3C LINE L1 5561 6941 -109 6 924 351 0 0 0 chr1 44562024 44562063 -152633369 + (CAA)n Simple_repeat Simple_repeat 1 39 0 7 924 240 86 0 0 chr1 44562065 44562100 -152633332 + (A)n Simple_repeat Simple_repeat 1 35 0 7 924 263 308 68 98 chr1 44562926 44563059 -152632373 + LTR16A LTR ERVL 7 135 -316 7 924 255 31 0 0 chr1 44563700 44563732 -152631700 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 924 366 85 0 0 chr1 44563732 44563791 -152631641 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 924 485 224 20 0 chr1 44563837 44563935 -152631497 - PB1D7 SINE Alu -11 109 10 7 925 255 284 62 0 chr1 44564747 44564828 -152630604 + ORR1E LTR MaLR 6 91 -268 7 925 684 291 127 50 chr1 44565092 44565417 -152630015 - ORR1D2 LTR MaLR 0 370 1 7 925 2477 87 46 3 chr1 44565471 44565842 -152629590 + MT-int LTR MaLR 4 390 -708 7 925 3883 65 0 2 chr1 44565842 44566354 -152629078 - L1_Mus1 LINE L1 -194 6373 5863 7 925 1218 216 30 58 chr1 44566376 44566773 -152628659 + Lx7 LINE L1 7311 7696 0 8 925 451 303 16 0 chr1 44567031 44567153 -152628279 - ID_B1 SINE B4 -99 125 2 8 925 874 272 37 37 chr1 44567312 44567526 -152627906 + MTD LTR MaLR 20 233 -186 8 925 481 200 71 8 chr1 44567526 44567652 -152627780 + Lx7 LINE L1 7121 7254 -442 8 925 269 276 93 33 chr1 44567875 44568025 -152627407 + Lx7 LINE L1 7536 7694 -2 8 925 297 286 0 0 chr1 44568039 44568116 -152627316 + GA-rich Low_complexity Low_complexity 1 77 0 8 925 1109 118 0 6 chr1 44568116 44568295 -152627137 + (GAA)n Simple_repeat Simple_repeat 3 180 0 8 925 711 202 11 11 chr1 44568298 44568478 -152626954 + GA-rich Low_complexity Low_complexity 1 180 0 8 925 1473 12 0 0 chr1 44568479 44568650 -152626782 + (GAA)n Simple_repeat Simple_repeat 1 171 0 8 925 632 216 232 6 chr1 44568667 44568835 -152626597 + MTD LTR MaLR 200 405 -14 8 925 3332 26 5 0 chr1 44568909 44569326 -152626106 - L1Md_F3 LINE L1 -514 6070 5652 8 925 3574 37 0 2 chr1 44569326 44569796 -152625636 + L1Md_F3 LINE L1 6141 6584 0 8 925 963 270 82 11 chr1 44570064 44570416 -152625016 + MTE2a LTR MaLR 1 377 -2 8 925 426 276 103 0 chr1 44570672 44570788 -152624644 + B1_Mur2 SINE Alu 7 134 -15 9 925 2668 108 13 0 chr1 44571143 44571530 -152623902 - MTB LTR MaLR -8 392 1 9 925 2337 57 0 7 chr1 44572132 44572432 -152623000 - L1Md_F2 LINE L1 0 6582 6285 9 925 3558 44 0 2 chr1 44572433 44572887 -152622545 + L1_Mm LINE L1 5250 5702 -181 9 925 4796 198 34 34 chr1 44573461 44574525 -152620907 - RMER1B Other Other -1 1065 2 9 925 217 368 16 0 chr1 44574694 44574819 -152620613 + (TATATG)n Simple_repeat Simple_repeat 6 132 0 9 925 239 250 8 51 chr1 44574907 44575025 -152620407 + A-rich Low_complexity Low_complexity 4 116 0 9 925 2105 173 39 76 chr1 44575140 44575602 -152619830 - RLTR21 LTR ERVK 0 1572 1128 9 925 396 0 0 0 chr1 44575602 44575646 -152619786 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 925 232 206 143 29 chr1 44575646 44575670 -152619762 - RMER12B LTR ERVK -205 1199 1177 9 925 387 0 0 0 chr1 44575714 44575757 -152619675 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 925 261 0 0 0 chr1 44575757 44575785 -152619647 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 925 3602 107 15 0 chr1 44575785 44576358 -152619074 - RLTR21 LTR ERVK -150 1254 566 1 925 5565 53 0 0 chr1 44576361 44577081 -152618351 + L1Md_F3 LINE L1 4867 5586 -297 1 925 7991 44 4 0 chr1 44577081 44578061 -152617371 + L1Md_F3 LINE L1 5587 6570 -14 1 925 2300 88 75 3 chr1 44578081 44578445 -152616987 - RMER16 LTR ERVK -61 472 1 1 925 412 319 136 40 chr1 44578687 44578938 -152616494 + MLT2B1 LTR ERVL 282 567 0 1 925 3765 140 12 16 chr1 44579139 44579718 -152615714 - RLTR21 LTR ERVK -995 577 1 1 925 221 307 0 51 chr1 44579774 44579853 -152615579 - RSINE1 SINE B4 0 165 91 1 925 265 392 96 11 chr1 44579833 44580011 -152615421 - B4A SINE B4 -71 221 29 1 925 261 0 0 0 chr1 44580735 44580764 -152614668 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 925 343 368 110 30 chr1 44580769 44581195 -152614237 - Lx8 LINE L1 -141 7332 6873 1 925 3040 90 9 0 chr1 44581230 44581654 -152613778 - L1_Mus4 LINE L1 -2 6634 6207 1 925 4593 159 2 1 chr1 44581662 44582485 -152612947 - L1_Mm LINE L1 -279 5604 4781 1 925 18532 152 9 94 chr1 44582491 44586159 -152609273 - L1_Mus1 LINE L1 0 6654 3483 1 925 1635 26 0 5 chr1 44586159 44586352 -152609080 - B2_Mm1a SINE B2 0 193 2 1 925 18532 181 6 127 chr1 44586352 44587965 -152607467 - L1_Mus1 LINE L1 -2395 3482 1919 1 925 180 0 0 0 chr1 44587965 44587985 -152607447 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 925 18532 181 6 127 chr1 44587985 44588693 -152606739 - L1_Mus1 LINE L1 -3959 1918 1204 1 925 2362 231 22 14 chr1 44588687 44589275 -152606157 - L1VL4 LINE L1 -5513 789 197 1 925 243 204 0 0 chr1 44589399 44589443 -152605989 + B1F SINE Alu 21 64 -85 1 925 198 0 0 0 chr1 44589609 44589631 -152605801 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 925 829 132 21 0 chr1 44589921 44590065 -152605367 + URR1A DNA MER1_type 80 226 0 1 925 628 264 65 15 chr1 44591124 44591324 -152604108 + B3 SINE B2 4 213 -3 1 925 485 296 14 9 chr1 44591369 44591517 -152603915 + B1F SINE Alu 6 150 0 1 925 468 0 0 0 chr1 44592099 44592151 -152603281 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 925 2308 209 75 22 chr1 44592190 44592856 -152602576 - Lx9 LINE L1 -9 7635 6935 1 925 6057 154 24 38 chr1 44592983 44594002 -152601430 - L1_Mur2 LINE L1 -1592 4285 3267 1 925 185 0 40 0 chr1 44594002 44594027 -152601405 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 925 1100 80 0 0 chr1 44594035 44594173 -152601259 - B1_Mus2 SINE Alu -7 140 3 1 925 6057 154 24 38 chr1 44594173 44594402 -152601030 - L1_Mur2 LINE L1 -2611 3266 3046 1 925 9017 146 35 22 chr1 44594400 44597300 -152598132 + Lx2 LINE L1 4063 6997 0 1 925 22 80 0 0 chr1 44597385 44597435 -152597997 + AT_rich Low_complexity Low_complexity 1 50 0 1 925 712 335 28 5 chr1 44597697 44597913 -152597519 + ID_B1 SINE B4 3 223 -1 1 925 642 281 78 6 chr1 44598073 44598252 -152597180 + B3 SINE B2 1 192 -24 1 925 396 199 98 273 chr1 44598308 44598428 -152597004 - B3 SINE B2 -5 211 98 1 925 1174 68 0 0 chr1 44598428 44598575 -152596857 + B1_Mus2 SINE Alu 1 147 0 1 925 396 199 98 273 chr1 44598575 44598625 -152596807 - B3 SINE B2 -119 97 94 1 925 1086 76 14 0 chr1 44598625 44598769 -152596663 + B1_Mus2 SINE Alu 2 147 0 1 925 207 0 0 0 chr1 44598771 44598794 -152596638 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 925 396 199 98 273 chr1 44598794 44598875 -152596557 - B3 SINE B2 -123 93 1 1 925 395 95 0 13 chr1 44600358 44600433 -152594999 + (TTTTTG)n Simple_repeat Simple_repeat 2 75 0 1 925 901 243 96 10 chr1 44600897 44601283 -152594149 + L1MC4a LINE L1 7091 7509 -373 1 925 1491 38 0 0 chr1 44601933 44602117 -152593315 + L1Md_A LINE L1 6399 6582 0 1 925 378 0 0 0 chr1 44603116 44603158 -152592274 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 925 454 136 0 12 chr1 44603426 44603508 -152591924 - 4.5SRNA scRNA scRNA 0 94 14 1 925 820 53 0 26 chr1 44603508 44603624 -152591808 + L1_Mus1 LINE L1 6455 6567 0 1 925 237 241 19 0 chr1 44603927 44603981 -152591451 + CT-rich Low_complexity Low_complexity 1 55 0 1 925 258 250 125 0 chr1 44603981 44604049 -152591383 - B1F SINE Alu -8 141 65 1 925 1087 293 34 31 chr1 44604049 44604405 -152591027 - MTEa LTR MaLR 0 379 23 1 925 533 58 0 11 chr1 44604533 44604620 -152590812 - L1Md_F3 LINE L1 0 6584 6499 1 925 25 0 0 0 chr1 44604664 44604689 -152590743 + AT_rich Low_complexity Low_complexity 1 25 0 1 925 216 0 0 0 chr1 44605747 44605771 -152589661 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 1 925 399 41 0 0 chr1 44605771 44605820 -152589612 + (T)n Simple_repeat Simple_repeat 1 49 0 1 925 427 288 108 0 chr1 44605820 44605959 -152589473 - ID_B1 SINE B4 0 224 71 1 925 504 59 0 0 chr1 44606049 44606117 -152589315 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 1 925 622 89 0 62 chr1 44606836 44606932 -152588500 + B1_Mus2 SINE Alu 2 91 -56 1 925 4447 153 98 22 chr1 44607083 44607926 -152587506 - RMER13B LTR ERVK 0 908 2 1 925 510 61 0 0 chr1 44607965 44608031 -152587401 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 1 925 582 54 0 0 chr1 44608031 44608104 -152587328 + (GAGAA)n Simple_repeat Simple_repeat 2 75 0 1 925 417 39 0 0 chr1 44609630 44609681 -152585751 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 925 378 0 0 0 chr1 44611392 44611434 -152583998 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 925 333 324 102 34 chr1 44611536 44611899 -152583533 - Lx9 LINE L1 -250 7223 6892 1 925 412 255 13 90 chr1 44612314 44612469 -152582963 - B1F SINE Alu 0 149 7 1 925 585 246 0 21 chr1 44614324 44614465 -152580967 - B1_Mur1 SINE Alu -10 139 2 1 925 284 288 35 89 chr1 44614476 44614669 -152580763 - B3A SINE B2 -9 186 9 1 925 1741 181 191 16 chr1 44614905 44615178 -152580254 - RLTR11A LTR ERVK 0 528 207 1 925 582 71 0 0 chr1 44615178 44615262 -152580170 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 925 1741 181 191 16 chr1 44615262 44615437 -152579995 - RLTR11A LTR ERVK -322 206 1 1 925 25 65 0 0 chr1 44615440 44615486 -152579946 + AT_rich Low_complexity Low_complexity 1 46 0 1 925 1979 110 0 0 chr1 44615824 44616106 -152579326 + Lx LINE L1 5818 6099 -555 1 925 3553 82 0 10 chr1 44616129 44616619 -152578813 - L1Md_F2 LINE L1 0 6582 6098 1 925 6162 119 12 6 chr1 44616620 44617826 -152577606 + Lx LINE L1 5439 6654 0 1 925 379 321 47 0 chr1 44617892 44617998 -152577434 + PB1D10 SINE Alu 7 117 0 1 925 26 0 0 0 chr1 44618873 44618899 -152576533 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 183 219 48 24 chr1 44618935 44618977 -152576455 - L3 LINE CR1 -4338 151 109 1 925 1513 116 181 15 chr1 44619019 44619290 -152576142 + Lx LINE L1 6333 6648 -6 1 925 30 45 0 0 chr1 44620154 44620198 -152575234 + AT_rich Low_complexity Low_complexity 1 44 0 1 925 24 0 0 0 chr1 44620384 44620408 -152575024 + AT_rich Low_complexity Low_complexity 1 24 0 1 925 282 314 148 21 chr1 44620719 44620908 -152574524 + LTR48 LTR ERV1 249 461 -326 1 925 251 240 69 138 chr1 44620960 44621105 -152574327 + LTR48 LTR ERV1 605 739 -48 1 925 713 269 148 46 chr1 44622366 44622717 -152572715 + MER31A LTR ERV1 1 387 -98 1 925 31 26 0 0 chr1 44622795 44622833 -152572599 + AT_rich Low_complexity Low_complexity 1 38 0 1 925 338 280 22 118 chr1 44623346 44623524 -152571908 - RSINE1 SINE B4 -2 163 3 1 925 304 327 82 29 chr1 44623628 44623798 -152571634 - B3A SINE B2 -12 186 8 1 925 666 132 0 0 chr1 44624803 44624939 -152570493 + (GA)n Simple_repeat Simple_repeat 1 136 0 1 925 1689 142 154 3 chr1 44625263 44625581 -152569851 + ORR1B2 LTR MaLR 2 367 0 1 925 485 256 140 90 chr1 44625960 44626282 -152569150 + ORR1E LTR MaLR 20 357 -2 1 925 235 368 22 22 chr1 44626894 44627033 -152568399 - B1_Mur2 SINE Alu -10 139 1 1 925 278 313 51 17 chr1 44627476 44627593 -152567839 + MIR SINE MIR 78 198 -64 1 925 1326 239 85 57 chr1 44628026 44628267 -152567165 - Lx9 LINE L1 -2 7642 7377 1 925 210 71 0 0 chr1 44628267 44628295 -152567137 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 1 925 449 84 0 14 chr1 44628295 44628367 -152567065 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 925 1326 239 85 57 chr1 44628367 44628687 -152566745 - Lx9 LINE L1 -268 7376 7065 1 925 255 122 0 0 chr1 44628734 44628783 -152566649 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 925 229 196 20 0 chr1 44628806 44628857 -152566575 + MT2B2 LTR ERVL 533 584 0 1 925 401 275 8 0 chr1 44629061 44629181 -152566251 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 925 191 255 39 0 chr1 44629194 44629245 -152566187 + L2 LINE L2 2827 2879 -540 1 925 183 42 0 0 chr1 44629423 44629447 -152565985 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1 925 1338 88 0 11 chr1 44629453 44629636 -152565796 - B2_Mm2 SINE B2 -14 181 1 1 925 1066 108 17 0 chr1 44630311 44630487 -152564945 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 925 233 338 0 0 chr1 44630520 44630588 -152564844 - RMER15 LTR ERVL -105 470 403 1 925 27 73 0 0 chr1 44631203 44631258 -152564174 + AT_rich Low_complexity Low_complexity 1 55 0 1 925 735 339 13 81 chr1 44631861 44632159 -152563273 + B4A SINE B4 6 283 -9 1 925 205 170 43 0 chr1 44632338 44632385 -152563047 + (TTATA)n Simple_repeat Simple_repeat 1 49 0 1 925 470 331 23 8 chr1 44632401 44632532 -152562900 + RSINE1 SINE B4 24 156 -9 1 925 332 331 47 16 chr1 44633488 44633617 -152561815 - MER20 DNA MER1_type -47 172 40 1 925 9553 123 41 20 chr1 44634041 44636733 -152558699 - Lx3C LINE L1 0 6976 4236 1 925 2298 129 18 12 chr1 44636735 44637134 -152558298 + L1_Mur1 LINE L1 2781 3181 -2705 1 925 181 314 0 28 chr1 44641295 44641367 -152554065 - MIRb SINE MIR -72 196 127 2 925 263 329 0 0 chr1 44642590 44642672 -152552760 + Arthur1B DNA Tip100 220 301 -924 2 925 225 238 48 0 chr1 44642686 44642749 -152552683 - MADE2 DNA Mariner -6 74 9 2 925 2603 178 23 34 chr1 44644090 44644655 -152550777 + RLTR31_Mm LTR ERVK 3 561 0 2 925 247 375 82 14 chr1 44644801 44645020 -152550412 - L2a LINE L2 0 3426 3193 2 925 423 324 70 25 chr1 44645207 44645451 -152549981 + LTR33 LTR ERVL 261 515 0 2 925 378 302 234 15 chr1 44645688 44646159 -152549273 - L2a LINE L2 -556 2863 2290 2 925 198 320 123 32 chr1 44647039 44647194 -152548238 - L3 LINE CR1 -7 4482 4314 2 925 408 135 0 0 chr1 44647397 44647471 -152547961 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 925 369 43 0 0 chr1 44647466 44647513 -152547919 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 925 753 278 93 9 chr1 44647526 44647740 -152547692 - B4 SINE B4 -34 258 27 2 925 623 237 21 7 chr1 44647847 44647980 -152547452 + B1_Mur1 SINE Alu 1 136 -13 2 925 281 82 20 0 chr1 44647980 44648029 -152547403 + (CAA)n Simple_repeat Simple_repeat 1 50 0 2 925 257 203 0 68 chr1 44649340 44649414 -152546018 + L1MC4a LINE L1 7812 7880 -2 2 925 3243 38 5 10 chr1 44650604 44651002 -152544430 + MTA_Mm LTR MaLR 1 396 0 2 925 689 272 118 32 chr1 44651246 44651626 -152543806 + L1MA6 LINE L1 5339 5751 -549 2 925 508 297 89 54 chr1 44651660 44652085 -152543347 + L1MA6 LINE L1 5864 6297 -3 2 925 208 370 78 28 chr1 44652209 44652351 -152543081 - L2a LINE L2 -4 3422 3274 2 925 406 362 173 40 chr1 44652747 44653193 -152542239 + MLT1N2 LTR MaLR 49 553 -9 2 925 23 33 0 0 chr1 44653326 44653356 -152542076 + AT_rich Low_complexity Low_complexity 1 30 0 2 925 2139 164 109 74 chr1 44654098 44654612 -152540820 - RMER16 LTR ERVK -1 532 1 2 925 658 332 68 28 chr1 44656127 44656452 -152538980 - MLT1C LTR MaLR -15 452 115 2 925 335 39 0 56 chr1 44656461 44656515 -152538917 - B1_Mus2 SINE Alu 0 147 97 2 925 306 183 21 128 chr1 44656989 44657083 -152538349 + B1_Mur4 SINE Alu 67 150 0 2 925 285 235 118 0 chr1 44657662 44657747 -152537685 - Tigger13a DNA MER2_type -303 468 374 2 925 244 331 8 23 chr1 44658111 44658241 -152537191 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 2 925 674 354 14 0 chr1 44658243 44658455 -152536977 - B3 SINE B2 -1 215 1 2 925 413 378 30 49 chr1 44658549 44658713 -152536719 + RSINE1 SINE B4 3 163 -2 2 925 41132 9 0 1 chr1 44658942 44666099 -152529333 - L1Md_A LINE L1 0 6582 1 2 925 3078 118 20 27 chr1 44666120 44666607 -152528825 - Lx2 LINE L1 -2 6995 6512 2 925 2161 142 3 0 chr1 44666609 44666975 -152528457 + L1_Mur1 LINE L1 3678 4044 -1842 2 925 627 130 0 0 chr1 44668479 44668579 -152526853 + (CTA)n Simple_repeat Simple_repeat 2 101 0 2 925 3622 87 21 9 chr1 44669489 44670049 -152525383 - Lx3B LINE L1 -523 6450 5884 2 925 3452 187 29 92 chr1 44670049 44670885 -152524547 - RLTR25B LTR ERVK -244 784 2 2 925 1805 235 99 92 chr1 44671457 44672250 -152523182 - RMER17B LTR ERVK -28 878 1 2 925 26 30 0 0 chr1 44673596 44673629 -152521803 + AT_rich Low_complexity Low_complexity 1 33 0 2 925 21 36 0 0 chr1 44673649 44673677 -152521755 + AT_rich Low_complexity Low_complexity 1 28 0 2 925 24 0 0 0 chr1 44674686 44674710 -152520722 + AT_rich Low_complexity Low_complexity 1 24 0 2 925 1931 223 67 34 chr1 44674914 44675434 -152519998 + RLTR20A LTR ERVK 13 551 0 2 925 377 291 80 29 chr1 44675441 44675579 -152519853 - RSINE1 SINE B4 -17 148 4 2 925 417 129 0 0 chr1 44675942 44676012 -152519420 + (TCC)n Simple_repeat Simple_repeat 3 72 0 2 925 2369 141 78 14 chr1 44676056 44676489 -152518943 - RMER6B LTR ERVK 0 461 1 2 925 3102 101 11 0 chr1 44676748 44677316 -152518116 - Lx LINE L1 -723 5931 5357 2 925 8079 89 59 5 chr1 44677314 44679423 -152516009 - L1Md_F2 LINE L1 -1 6581 4330 2 925 3397 146 39 12 chr1 44679423 44680062 -152515370 + Lx LINE L1 5963 6618 -36 2 925 338 42 21 0 chr1 44680062 44680110 -152515322 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 2 925 725 112 0 0 chr1 44680527 44680634 -152514798 - RMER21B LTR ERV1 -427 415 309 2 925 364 202 0 25 chr1 44680632 44680713 -152514719 - ORR1C2 LTR MaLR -305 79 1 2 925 228 376 43 43 chr1 44680733 44680872 -152514560 - MTD LTR MaLR -219 200 62 2 925 3815 116 105 3 chr1 44680903 44681493 -152513939 - Lx2 LINE L1 -5 6992 6343 2 925 482 314 56 43 chr1 44682194 44682497 -152512935 - RLTR15 LTR ERVK -15 344 38 2 925 193 289 186 49 chr1 44682659 44682761 -152512671 + L2a LINE L2 3307 3422 -4 2 925 213 39 0 0 chr1 44683115 44683141 -152512291 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2 925 180 0 0 0 chr1 44683141 44683161 -152512271 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 925 327 241 26 26 chr1 44683605 44683720 -152511712 + CT-rich Low_complexity Low_complexity 3 117 0 2 925 705 297 49 85 chr1 44683724 44684215 -152511217 - RLTR11A2 LTR ERVK -52 476 1 2 925 279 0 0 0 chr1 44684754 44684785 -152510647 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 925 285 146 0 0 chr1 44684853 44684901 -152510531 + (TCC)n Simple_repeat Simple_repeat 2 49 0 2 925 351 119 0 0 chr1 44684897 44684964 -152510468 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 925 471 35 0 0 chr1 44685212 44685269 -152510163 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 925 380 37 19 0 chr1 44685359 44685413 -152510019 + (CTG)n Simple_repeat Simple_repeat 3 57 0 2 925 1387 241 78 48 chr1 44685420 44685918 -152509514 - RLTR26 LTR ERVK -108 534 1 2 925 186 417 0 0 chr1 44687007 44687079 -152508353 + L2b LINE L2 3303 3374 -1 2 925 7076 72 11 5 chr1 44688567 44689804 -152505628 - L1_Mus2 LINE L1 -1 6565 5321 2 925 581 228 53 0 chr1 44690014 44690128 -152505304 - B3A SINE B2 -78 120 1 2 925 1120 295 31 39 chr1 44690549 44690909 -152504523 + ORR1E LTR MaLR 1 357 -2 2 925 1669 176 56 92 chr1 44691108 44691501 -152503931 + ORR1C2 LTR MaLR 6 384 0 2 925 3426 113 30 6 chr1 44691911 44692443 -152502989 + Lx3_Mus LINE L1 6446 6990 -19 2 925 23 0 0 0 chr1 44692443 44692466 -152502966 + AT_rich Low_complexity Low_complexity 1 23 0 2 925 1267 98 27 0 chr1 44692816 44692999 -152502433 + B2_Mm2 SINE B2 3 190 -5 2 925 758 122 0 0 chr1 44693373 44693488 -152501944 - B1_Mus2 SINE Alu -23 124 10 2 925 545 279 19 29 chr1 44693969 44694169 -152501263 - B3 SINE B2 -4 189 1 2 925 21 71 0 0 chr1 44694348 44694390 -152501042 + AT_rich Low_complexity Low_complexity 1 42 0 2 925 28 29 0 0 chr1 44694449 44694484 -152500948 + AT_rich Low_complexity Low_complexity 1 35 0 2 925 1939 173 13 37 chr1 44694954 44695332 -152500100 - RLTR11A2 LTR ERVK -158 369 1 2 926 266 211 0 136 chr1 44695991 44696079 -152499353 + MT2B LTR ERVL 152 227 -374 2 926 356 218 38 13 chr1 44696008 44696087 -152499345 + B4 SINE B4 86 166 -126 2 926 530 126 8 8 chr1 44696087 44696104 -152499328 + B1_Mus1 SINE Alu 1 95 -219 2 926 360 0 0 0 chr1 44696196 44696236 -152499196 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2 926 992 223 66 4 chr1 44696661 44696904 -152498528 - RLTR11A2 LTR ERVK -18 509 252 2 926 459 35 0 0 chr1 44697512 44697569 -152497863 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 926 377 309 21 14 chr1 44697663 44697804 -152497628 - MLT1B LTR MaLR -4 386 245 2 926 245 388 60 9 chr1 44698029 44698245 -152497187 - L2 LINE L2 -542 2877 2651 2 926 209 98 24 0 chr1 44698617 44698658 -152496774 + (CAA)n Simple_repeat Simple_repeat 2 43 0 2 926 426 312 60 45 chr1 44698861 44699263 -152496169 + L1M3e LINE L1 1706 2113 -4917 2 926 1390 41 0 0 chr1 44699439 44699610 -152495822 + L1Md_F2 LINE L1 5416 5586 -297 2 926 8007 36 20 8 chr1 44699611 44700594 -152494838 + L1Md_F2 LINE L1 5588 6582 0 2 926 443 354 81 32 chr1 44702306 44702650 -152492782 + L1M4c LINE L1 1186 1546 -4838 2 926 321 229 162 32 chr1 44703053 44703238 -152492194 + L1M4c LINE L1 2091 2299 -4085 2 926 564 214 0 10 chr1 44703306 44703410 -152492022 - B3 SINE B2 -112 104 2 2 926 768 307 111 25 chr1 44703429 44704044 -152491388 + L1M4c LINE L1 2446 3116 -3266 2 926 496 262 117 35 chr1 44704166 44704423 -152491009 + L1M4c LINE L1 3695 3972 -2407 2 926 23 33 0 0 chr1 44705776 44705806 -152489626 + AT_rich Low_complexity Low_complexity 1 30 0 2 926 2905 116 40 9 chr1 44705810 44706261 -152489171 - Lx3_Mus LINE L1 -17 6992 6528 2 926 2375 116 0 0 chr1 44706261 44706622 -152488810 + Lx3_Mus LINE L1 6164 6524 -485 2 926 813 225 54 24 chr1 44707533 44707738 -152487694 - URR1B DNA MER1_type -10 215 5 2 926 733 211 109 35 chr1 44707988 44708189 -152487243 + B3 SINE B2 1 216 0 2 926 198 0 0 0 chr1 44709276 44709298 -152486134 + (T)n Simple_repeat Simple_repeat 1 22 0 2 926 519 336 35 7 chr1 44709396 44709540 -152485892 - RSINE1 SINE B4 -6 159 12 2 926 290 325 0 0 chr1 44710324 44710404 -152485028 + RSINE1 SINE B4 82 161 -4 2 926 333 0 0 0 chr1 44710502 44710539 -152484893 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 926 277 228 63 0 chr1 44710963 44711042 -152484390 + Lx7 LINE L1 7613 7696 0 2 926 3791 186 8 24 chr1 44711696 44712534 -152482898 - L1_Mur2 LINE L1 -488 5389 4565 2 926 13340 16 1 0 chr1 44712544 44714316 -152481116 + L1Md_A LINE L1 4287 6059 -523 2 926 5908 109 8 6 chr1 44714305 44715283 -152480149 - L1VL4 LINE L1 -431 3128 2149 2 926 3214 112 8 40 chr1 44715282 44716295 -152479137 - L1VL4 LINE L1 -2168 1391 414 2 926 264 328 48 72 chr1 44716599 44716806 -152478626 - MLT1E1 LTR MaLR -64 590 389 2 926 592 267 78 26 chr1 44718342 44718534 -152476898 + B3 SINE B2 8 209 -7 2 926 1101 171 38 0 chr1 44719060 44719270 -152476162 + URR1B DNA MER1_type 8 225 0 3 926 25 0 0 0 chr1 44720146 44720171 -152475261 + AT_rich Low_complexity Low_complexity 1 25 0 3 926 1044 89 0 0 chr1 44720407 44720542 -152474890 + B1_Mus2 SINE Alu 1 135 -12 3 926 369 0 0 0 chr1 44721912 44721953 -152473479 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 926 6911 119 11 6 chr1 44721954 44723006 -152472426 - Lx3A LINE L1 -16 6965 5909 3 926 694 171 54 0 chr1 44723022 44723151 -152472281 - Lx LINE L1 -168 6486 6351 3 926 721 203 33 22 chr1 44723153 44723334 -152472098 - L1_Mur1 LINE L1 -6738 244 62 3 926 420 37 0 0 chr1 44723582 44723636 -152471796 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 926 1615 172 38 124 chr1 44724240 44724550 -152470882 + ORR1A1 LTR MaLR 1 287 -72 3 926 5685 125 11 2 chr1 44724550 44725435 -152469997 + Lx LINE L1 5762 6654 0 3 926 1615 156 34 128 chr1 44725435 44725540 -152469892 + ORR1A1 LTR MaLR 285 346 0 3 926 1216 285 80 15 chr1 44725622 44726011 -152469421 - MTD LTR MaLR -5 414 1 3 926 22 35 0 0 chr1 44726360 44726389 -152469043 + AT_rich Low_complexity Low_complexity 1 29 0 3 926 4108 164 10 7 chr1 44727004 44727728 -152467704 - Lx LINE L1 -7 6647 5922 3 926 11469 102 25 4 chr1 44727730 44729220 -152466212 - L1_Mur1 LINE L1 -1246 4640 3115 3 926 3438 30 2 0 chr1 44729220 44729615 -152465817 + MTA_Mm LTR MaLR 1 396 0 3 926 11469 169 104 7 chr1 44729615 44730604 -152464828 - L1_Mur1 LINE L1 -2772 3114 1802 3 926 3611 166 96 15 chr1 44730584 44731685 -152463747 - L1_Mur1 LINE L1 -4434 1452 30 3 926 219 353 59 0 chr1 44732272 44732357 -152463075 + ID_B1 SINE B4 84 173 -51 3 926 538 272 8 16 chr1 44735356 44735483 -152459949 - ID_B1 SINE B4 -8 216 91 3 926 26 0 0 0 chr1 44736179 44736205 -152459227 + AT_rich Low_complexity Low_complexity 1 26 0 3 926 6623 138 32 3 chr1 44736718 44738337 -152457095 + Lx2 LINE L1 4956 6645 -352 3 926 1254 140 5 9 chr1 44738335 44738558 -152456874 + Lx2 LINE L1 6775 6996 -1 3 926 558 332 55 55 chr1 44738868 44739158 -152456274 + B4A SINE B4 2 291 -1 3 926 251 128 0 0 chr1 44739184 44739223 -152456209 - U2 snRNA snRNA -149 39 1 3 926 1140 63 0 12 chr1 44739831 44739992 -152455440 - L1Md_A LINE L1 0 6582 6424 3 926 223 159 45 0 chr1 44740216 44740260 -152455172 + A-rich Low_complexity Low_complexity 5 50 0 3 926 1974 224 42 55 chr1 44740510 44741034 -152454398 + RLTR20B3 LTR ERVK 1 517 -60 3 926 414 0 0 0 chr1 44741474 44741520 -152453912 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 926 252 59 0 0 chr1 44742347 44742381 -152453051 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 926 1758 158 39 0 chr1 44742455 44742766 -152452666 - L1_Mm LINE L1 -54 5829 5507 3 926 1803 163 18 63 chr1 44742767 44743147 -152452285 + Lx3C LINE L1 6606 6968 -8 3 926 779 72 0 9 chr1 44743424 44743536 -152451896 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 3 926 812 206 115 14 chr1 44745020 44745237 -152450195 + Lx5 LINE L1 6805 7043 -7 3 926 515 241 26 0 chr1 44745813 44745929 -152449503 + PB1D7 SINE Alu 1 119 -1 3 926 635 308 22 16 chr1 44746702 44746887 -152448545 - ID_B1 SINE B4 -25 199 14 3 926 185 395 12 0 chr1 44747192 44747273 -152448159 + L3 LINE CR1 4398 4479 -10 3 926 222 143 0 0 chr1 44748135 44748184 -152447248 + (T)n Simple_repeat Simple_repeat 1 49 0 3 926 240 338 99 46 chr1 44748230 44748382 -152447050 - LTR78 LTR ERV1 -302 1002 843 3 926 186 133 0 0 chr1 44748456 44748486 -152446946 + (CAT)n Simple_repeat Simple_repeat 3 32 0 3 926 604 36 0 24 chr1 44748751 44748836 -152446596 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 926 36899 6 0 1 chr1 44749409 44755184 -152440248 + L1Md_A LINE L1 1 5586 -297 3 926 8951 8 0 0 chr1 44755184 44756179 -152439253 + L1Md_A LINE L1 5587 6581 -1 3 926 703 309 65 38 chr1 44756854 44757221 -152438211 - MTEb LTR MaLR 0 379 3 3 926 406 292 100 0 chr1 44757541 44757671 -152437761 - B1F SINE Alu -6 143 1 3 926 729 99 0 0 chr1 44757680 44757801 -152437631 + (TC)n Simple_repeat Simple_repeat 2 122 0 3 926 243 0 0 0 chr1 44757801 44757827 -152437605 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 926 618 345 28 14 chr1 44757852 44758134 -152437298 - B4A SINE B4 -6 286 1 3 926 2195 132 116 0 chr1 44758212 44758599 -152436833 + BGLII_A LTR ERVK 14 445 0 3 926 801 254 35 10 chr1 44758696 44758895 -152436537 - B3 SINE B2 -11 205 2 3 926 635 301 0 0 chr1 44759272 44759408 -152436024 + B1_Mur1 SINE Alu 13 148 -1 3 926 9195 128 12 5 chr1 44759552 44762125 -152433307 + L1VL4 LINE L1 1 2384 -1175 3 926 4583 157 4 12 chr1 44762131 44762444 -152432988 + Lx2 LINE L1 4952 5257 -626 3 926 1232 113 11 0 chr1 44762444 44762629 -152432803 + B2_Mm1t SINE B2 1 187 -6 3 926 5627 134 60 11 chr1 44762629 44763946 -152431486 + Lx2 LINE L1 5258 6643 -354 3 926 1352 114 5 5 chr1 44763946 44764157 -152431275 + Lx2 LINE L1 6775 6985 -12 3 926 343 130 0 25 chr1 44764203 44764282 -152431150 + A-rich Low_complexity Low_complexity 4 80 0 3 926 563 309 60 39 chr1 44764493 44764776 -152430656 - B4A SINE B4 -2 290 2 3 926 733 196 36 14 chr1 44765948 44766088 -152429344 + B1_Mus2 SINE Alu 2 144 -3 3 926 542 40 0 0 chr1 44766450 44766526 -152428906 + L1Md_F2 LINE L1 6499 6574 -8 3 926 189 0 0 0 chr1 44766526 44766547 -152428885 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 926 284 127 18 0 chr1 44766547 44766602 -152428830 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 926 393 75 0 0 chr1 44766944 44766997 -152428435 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 926 189 0 0 0 chr1 44766997 44767018 -152428414 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 926 426 39 0 0 chr1 44767044 44767096 -152428336 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 926 195 377 68 23 chr1 44768073 44768206 -152427226 - MIRb SINE MIR -104 164 26 3 926 1146 228 89 26 chr1 44768387 44768755 -152426677 - MTD LTR MaLR -12 384 1 3 926 229 283 83 42 chr1 44769192 44769288 -152426144 - PB1D7 SINE Alu -3 117 18 3 926 242 340 96 10 chr1 44769353 44769457 -152425975 - L2 LINE L2 -705 2714 2602 3 926 25 31 0 0 chr1 44769689 44769721 -152425711 + AT_rich Low_complexity Low_complexity 1 32 0 3 926 189 74 0 0 chr1 44769922 44769949 -152425483 + (TATAA)n Simple_repeat Simple_repeat 3 29 0 3 926 273 98 0 0 chr1 44770426 44770467 -152424965 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 926 236 154 19 0 chr1 44770920 44770972 -152424460 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 926 393 75 0 0 chr1 44770981 44771034 -152424398 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 926 405 0 0 0 chr1 44771250 44771295 -152424137 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 926 774 60 0 0 chr1 44772236 44772336 -152423096 + (GGAGA)n Simple_repeat Simple_repeat 5 104 0 3 926 1816 196 59 40 chr1 44772337 44772741 -152422691 - RMER10A LTR ERVL -30 412 1 3 926 366 308 148 0 chr1 44773561 44773730 -152421702 + MER2 DNA MER2_type 9 202 -143 3 926 4792 70 32 0 chr1 44774035 44774665 -152420767 - L1_Mus1 LINE L1 -1 6566 5917 3 926 8481 79 22 0 chr1 44774667 44776658 -152418774 - L1Md_F2 LINE L1 -12 6570 4526 3 926 4689 66 10 3 chr1 44776658 44777277 -152418155 + L1_Mus2 LINE L1 5944 6566 0 3 926 890 19 9 0 chr1 44777375 44777483 -152417949 + (TTCTC)n Simple_repeat Simple_repeat 4 112 0 3 926 1514 174 89 46 chr1 44777695 44778086 -152417346 - RMER17C LTR ERVK 0 410 3 3 926 25 75 0 0 chr1 44778464 44778517 -152416915 + AT_rich Low_complexity Low_complexity 1 53 0 3 926 232 228 168 0 chr1 44778576 44778677 -152416755 - HAL1b LINE L1 -221 1788 1671 3 926 38112 41 3 3 chr1 44779233 44785696 -152409736 - L1Md_T LINE L1 0 6585 24 3 926 198 0 0 0 chr1 44785712 44785734 -152409698 + (T)n Simple_repeat Simple_repeat 1 22 0 3 926 290 62 0 0 chr1 44785740 44785788 -152409644 - L1Md_T LINE L1 0 6582 6535 3 926 3860 35 3 2 chr1 44785784 44786805 -152408627 + L1Md_T LINE L1 5438 6502 -80 3 926 21 0 0 0 chr1 44786884 44786905 -152408527 + AT_rich Low_complexity Low_complexity 1 21 0 3 926 237 269 64 0 chr1 44787113 44787191 -152408241 - Lx9 LINE L1 -178 7466 7384 3 926 327 300 75 75 chr1 44788857 44789084 -152406348 - Lx8 LINE L1 -2 7471 7245 3 926 25 65 0 0 chr1 44789267 44789313 -152406119 + AT_rich Low_complexity Low_complexity 1 46 0 3 926 1489 237 55 14 chr1 44790978 44791411 -152404021 + Lx9 LINE L1 7191 7641 -3 3 926 969 47 0 0 chr1 44791756 44791883 -152403549 + (GAA)n Simple_repeat Simple_repeat 2 128 0 3 926 33 56 0 0 chr1 44792427 44792481 -152402951 + AT_rich Low_complexity Low_complexity 1 54 0 3 926 288 0 0 0 chr1 44792744 44792776 -152402656 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 926 1278 177 9 14 chr1 44793498 44793721 -152401711 + URR1B DNA MER1_type 1 222 -3 3 926 220 298 34 45 chr1 44794873 44794961 -152400471 - MIR SINE MIR -108 154 68 3 926 298 287 211 8 chr1 44795745 44795868 -152399564 - RSINE1 SINE B4 -2 163 16 3 926 191 114 29 0 chr1 44796350 44796385 -152399047 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 926 23 54 0 0 chr1 44798115 44798152 -152397280 + AT_rich Low_complexity Low_complexity 1 37 0 3 926 572 188 7 0 chr1 44799099 44799237 -152396195 + CT-rich Low_complexity Low_complexity 2 140 0 3 926 333 0 0 0 chr1 44799237 44799274 -152396158 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 926 442 170 16 51 chr1 44799833 44800095 -152395337 + (TATG)n Simple_repeat Simple_repeat 1 252 0 3 926 429 233 94 8 chr1 44800099 44800216 -152395216 - B1F SINE Alu -22 127 1 3 926 195 191 44 73 chr1 44800631 44800699 -152394733 + L3 LINE CR1 2196 2261 -2228 3 926 5822 196 53 131 chr1 44803658 44803774 -152391658 + Lx6 LINE L1 4172 4291 -1589 3 926 693 0 0 0 chr1 44803774 44803851 -152391581 + (GAA)n Simple_repeat Simple_repeat 2 78 0 4 926 5822 196 53 131 chr1 44803851 44804177 -152391255 + Lx6 LINE L1 4292 4585 -1295 3 926 216 0 0 0 chr1 44804177 44804201 -152391231 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 926 5822 196 53 131 chr1 44804201 44804421 -152391011 + Lx6 LINE L1 4586 4629 -1251 3 926 198 0 0 0 chr1 44804421 44804443 -152390989 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 926 5822 196 53 131 chr1 44804443 44805487 -152389945 + Lx6 LINE L1 4630 5740 -140 3 926 237 33 0 0 chr1 44805487 44805517 -152389915 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 926 5822 224 75 133 chr1 44805517 44806439 -152388993 + Lx6 LINE L1 5741 6572 -888 3 926 491 236 23 191 chr1 44806575 44806748 -152388684 + B1_Mus1 SINE Alu 3 146 -2 4 926 260 72 27 80 chr1 44806758 44806833 -152388599 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 926 2016 82 0 14 chr1 44807070 44807356 -152388076 - L1Md_F2 LINE L1 -11 6571 6290 4 926 214 233 0 0 chr1 44807636 44807679 -152387753 + CT-rich Low_complexity Low_complexity 4 46 0 4 926 458 290 29 7 chr1 44809769 44809908 -152385524 + B1F SINE Alu 1 142 -7 4 926 6564 91 22 16 chr1 44809909 44810843 -152384589 + Lx LINE L1 5703 6642 -12 4 926 449 117 26 0 chr1 44810877 44810954 -152384478 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 4 926 378 0 0 0 chr1 44811549 44811591 -152383841 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 926 4200 207 77 35 chr1 44811591 44812566 -152382866 - Lx5 LINE L1 -11 7039 6024 4 926 539 285 65 62 chr1 44812688 44813010 -152382422 - MLT1B LTR MaLR -7 383 61 4 926 236 255 26 20 chr1 44813022 44813174 -152382258 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 926 3375 16 21 0 chr1 44813386 44813774 -152381658 - MTA_Mm LTR MaLR 0 396 1 4 926 9121 33 4 1 chr1 44813774 44814869 -152380563 - MTA_Mm-int LTR MaLR 0 1098 1 4 926 3475 18 2 0 chr1 44814869 44815263 -152380169 - MTA_Mm LTR MaLR 0 396 2 4 926 2221 279 45 17 chr1 44815372 44816020 -152379412 - Lx8 LINE L1 -610 6863 6198 4 926 596 311 131 4 chr1 44816262 44816530 -152378902 - MER57D LTR ERV1 -109 302 1 4 926 196 354 35 47 chr1 44816579 44816665 -152378767 + MER5A DNA MER1_type 13 97 -92 4 926 243 0 0 0 chr1 44816702 44816729 -152378703 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 926 950 84 0 0 chr1 44816729 44816851 -152378581 - B1_Mm SINE Alu -8 139 18 4 926 657 284 23 14 chr1 44816857 44817071 -152378361 - B3 SINE B2 0 216 1 4 926 360 0 0 0 chr1 44818106 44818146 -152377286 + (CAA)n Simple_repeat Simple_repeat 3 42 0 4 926 193 128 43 0 chr1 44819031 44819078 -152376354 + GA-rich Low_complexity Low_complexity 5 53 0 4 926 1421 157 113 14 chr1 44819660 44819713 -152375719 + RLTR20B1 LTR ERVK 240 304 -259 4 926 492 32 0 0 chr1 44819713 44819775 -152375657 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 926 1421 157 113 14 chr1 44819775 44819920 -152375512 + RLTR20B1 LTR ERVK 305 467 -96 4 926 336 48 0 0 chr1 44819920 44819962 -152375470 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 926 1421 157 113 14 chr1 44819962 44820046 -152375386 + RLTR20B1 LTR ERVK 468 549 -14 4 926 1144 273 40 29 chr1 44820062 44820436 -152374996 - MTE2a LTR MaLR -1 378 1 4 926 1172 47 14 0 chr1 44821287 44821435 -152373997 + B1_Mur4 SINE Alu 1 150 0 4 926 234 0 0 0 chr1 44821435 44821461 -152373971 + (A)n Simple_repeat Simple_repeat 1 26 0 4 926 570 51 0 0 chr1 44821908 44821986 -152373446 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 926 234 0 0 0 chr1 44822020 44822046 -152373386 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 926 1141 68 0 0 chr1 44822062 44822210 -152373222 - B1_Mus1 SINE Alu 0 148 1 4 926 180 97 0 0 chr1 44822567 44822598 -152372834 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 926 252 86 0 0 chr1 44823501 44823536 -152371896 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 926 23 54 0 0 chr1 44824006 44824043 -152371389 + AT_rich Low_complexity Low_complexity 1 37 0 4 926 21 0 0 0 chr1 44824358 44824379 -152371053 + AT_rich Low_complexity Low_complexity 1 21 0 4 926 22 0 0 0 chr1 44824487 44824509 -152370923 + AT_rich Low_complexity Low_complexity 1 22 0 4 926 185 248 89 89 chr1 44824664 44824788 -152370644 + L3 LINE CR1 4289 4412 -77 4 926 22 0 0 0 chr1 44826144 44826166 -152369266 + AT_rich Low_complexity Low_complexity 1 22 0 4 926 387 0 0 0 chr1 44826231 44826274 -152369158 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 4 927 28 79 0 0 chr1 44826903 44826966 -152368466 + AT_rich Low_complexity Low_complexity 1 63 0 4 927 299 339 98 0 chr1 44827404 44827516 -152367916 + ID_B1 SINE B4 12 134 -90 4 927 554 264 161 0 chr1 44828188 44828362 -152367070 + B3 SINE B2 5 206 -10 4 927 188 86 0 28 chr1 44828702 44828738 -152366694 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 927 487 339 8 0 chr1 44828740 44828867 -152366565 - RSINE1 SINE B4 -13 152 25 4 927 219 103 0 0 chr1 44828893 44828932 -152366500 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 927 30 0 0 0 chr1 44831561 44831591 -152363841 + AT_rich Low_complexity Low_complexity 1 30 0 4 927 4413 129 21 26 chr1 44831596 44832321 -152363111 - Lx2 LINE L1 -1 6996 6276 4 927 1955 77 44 0 chr1 44832338 44832612 -152362820 + Lx LINE L1 5587 5872 -782 4 927 302 140 0 0 chr1 44832607 44832657 -152362775 + Lx2 LINE L1 6222 6271 -726 4 927 215 174 22 0 chr1 44832856 44832902 -152362530 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 927 729 229 0 28 chr1 44833728 44833872 -152361560 - URR1A DNA MER1_type -85 141 2 4 927 534 129 0 0 chr1 44834254 44834339 -152361093 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 927 23 0 0 0 chr1 44834966 44834989 -152360443 + AT_rich Low_complexity Low_complexity 1 23 0 4 927 234 0 0 0 chr1 44836108 44836134 -152359298 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 927 267 279 157 6 chr1 44836323 44836489 -152358943 + Lx9 LINE L1 7313 7503 -141 4 927 24 0 0 0 chr1 44836587 44836611 -152358821 + AT_rich Low_complexity Low_complexity 1 24 0 4 927 215 114 0 22 chr1 44836981 44837026 -152358406 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 927 2437 41 127 0 chr1 44838528 44838866 -152356566 - MTB LTR MaLR 0 400 20 4 927 282 135 0 55 chr1 44838853 44838908 -152356524 - MTB-int LTR MaLR -10 1088 1037 4 927 530 254 252 14 chr1 44839030 44839341 -152356091 - MTD LTR MaLR -14 405 34 4 927 321 28 0 0 chr1 44839509 44839545 -152355887 + L1Md_T LINE L1 5551 5586 -297 4 927 8386 30 0 0 chr1 44839545 44840530 -152354902 + L1Md_T LINE L1 5587 6571 -11 4 927 257 236 78 11 chr1 44840633 44840723 -152354709 + L1M2 LINE L1 5377 5472 -717 4 927 237 65 0 0 chr1 44840724 44840755 -152354677 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 927 477 0 0 0 chr1 44840764 44840817 -152354615 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 927 853 79 32 0 chr1 44840819 44840945 -152354487 - MTB LTR MaLR -218 182 53 4 927 260 310 30 83 chr1 44840952 44841121 -152354311 + L1M2 LINE L1 5514 5673 -618 4 927 220 96 26 64 chr1 44841170 44841248 -152354184 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 4 927 523 188 152 48 chr1 44841258 44841403 -152354029 - Lx9 LINE L1 -496 7148 6989 4 927 508 250 14 14 chr1 44841404 44841546 -152353886 + Lx9 LINE L1 6836 6977 -667 4 927 2350 321 45 19 chr1 44841682 44842559 -152352873 - Lx8 LINE L1 -220 7253 6355 4 927 1704 183 93 19 chr1 44842564 44842931 -152352501 + ORR1B1 LTR MaLR 1 394 0 4 927 4224 218 43 9 chr1 44842931 44843691 -152351741 + ORR1B1-int LTR MaLR 1 781 -728 4 927 486 0 0 0 chr1 44843691 44843745 -152351687 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 927 351 0 0 0 chr1 44843745 44843783 -152351649 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 927 4224 218 43 9 chr1 44843783 44843997 -152351435 + ORR1B1-int LTR MaLR 782 1007 -502 4 927 998 163 36 67 chr1 44843992 44844216 -152351216 + ORR1B1-int LTR MaLR 1293 1509 0 4 927 1633 196 79 0 chr1 44844235 44844551 -152350881 + ORR1B1 LTR MaLR 44 384 -10 4 927 24 0 0 0 chr1 44845183 44845207 -152350225 + AT_rich Low_complexity Low_complexity 1 24 0 4 927 492 99 0 0 chr1 44845549 44845620 -152349812 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 927 1928 78 84 39 chr1 44845789 44846121 -152349311 - L1_Mus3 LINE L1 -1 6637 6291 4 927 198 0 0 0 chr1 44846221 44846243 -152349189 + (T)n Simple_repeat Simple_repeat 1 22 0 4 927 37 39 0 0 chr1 44846876 44846927 -152348505 + AT_rich Low_complexity Low_complexity 1 51 0 4 927 336 0 35 53 chr1 44847777 44847834 -152347598 + (CTTA)n Simple_repeat Simple_repeat 1 56 0 4 927 599 331 120 23 chr1 44848274 44848540 -152346892 + B4 SINE B4 1 292 0 4 927 244 360 52 26 chr1 44848748 44848825 -152346607 + B4 SINE B4 210 288 -4 4 927 21 0 0 0 chr1 44848995 44849016 -152346416 + AT_rich Low_complexity Low_complexity 1 21 0 4 927 21 0 0 0 chr1 44849402 44849423 -152346009 + AT_rich Low_complexity Low_complexity 1 21 0 4 927 747 230 0 0 chr1 44850519 44850658 -152344774 + B1_Mm SINE Alu 4 142 -5 4 927 402 21 0 0 chr1 44850834 44850881 -152344551 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 927 241 68 45 0 chr1 44850903 44850947 -152344485 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 927 469 179 8 8 chr1 44850947 44851065 -152344367 + Lx9 LINE L1 7519 7636 -8 4 927 270 273 182 0 chr1 44851272 44851349 -152344083 + B3A SINE B2 1 91 -107 4 927 258 81 0 0 chr1 44851428 44851465 -152343967 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 927 21 71 0 0 chr1 44852762 44852804 -152342628 + AT_rich Low_complexity Low_complexity 1 42 0 4 927 300 111 0 0 chr1 44854232 44854277 -152341155 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 927 22 56 0 0 chr1 44854665 44854701 -152340731 + AT_rich Low_complexity Low_complexity 1 36 0 4 927 947 224 125 30 chr1 44855379 44855519 -152339913 - Lx9 LINE L1 -2 7642 7480 4 927 985 103 0 18 chr1 44855519 44855687 -152339745 + (TATATG)n Simple_repeat Simple_repeat 2 166 0 4 927 947 224 125 30 chr1 44855687 44855850 -152339582 - Lx9 LINE L1 -165 7479 7311 4 927 2077 73 0 0 chr1 44855968 44856243 -152339189 + L1_Mm LINE L1 4602 4876 -1007 4 927 26 0 0 0 chr1 44856718 44856744 -152338688 + AT_rich Low_complexity Low_complexity 1 26 0 4 927 258 227 23 0 chr1 44856864 44856952 -152338480 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 927 537 30 0 0 chr1 44856952 44857019 -152338413 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 4 927 863 226 82 53 chr1 44857213 44857516 -152337916 - Lx9 LINE L1 -1 7643 7332 4 927 6741 51 6 3 chr1 44857497 44858351 -152337081 - L1Md_F3 LINE L1 0 6584 5729 4 927 5658 57 1 4 chr1 44858351 44859076 -152336356 + L1Md_F3 LINE L1 4863 5585 -298 4 927 7589 46 32 3 chr1 44859077 44860044 -152335388 + L1Md_F2 LINE L1 5587 6581 -1 4 927 339 242 63 69 chr1 44860046 44860146 -152335286 - PB1D9 SINE Alu -11 109 8 4 927 456 19 0 0 chr1 44862060 44862113 -152333319 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 927 21 0 0 0 chr1 44862908 44862929 -152332503 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 3529 142 16 5 chr1 44863759 44864340 -152331092 - Lx2 LINE L1 -13 6984 6398 5 927 408 305 115 80 chr1 44864341 44864690 -152330742 - RLTR9A LTR ERVK 0 368 8 5 927 3943 144 89 37 chr1 44864714 44865149 -152330283 - Lx2B LINE L1 -595 6405 5961 5 927 970 130 0 85 chr1 44865149 44865350 -152330082 - L1Md_F2 LINE L1 -1 6581 6398 5 927 3943 144 89 37 chr1 44865350 44865666 -152329766 - Lx2B LINE L1 -1040 5960 5615 5 927 233 329 106 0 chr1 44866252 44866422 -152329010 + L1MC3 LINE L1 7590 7777 -8 5 927 845 80 24 0 chr1 44867925 44868050 -152327382 + (TTTTC)n Simple_repeat Simple_repeat 4 131 0 5 927 42 0 0 0 chr1 44868064 44868106 -152327326 + AT_rich Low_complexity Low_complexity 1 42 0 5 927 22 0 0 0 chr1 44868236 44868258 -152327174 + AT_rich Low_complexity Low_complexity 1 22 0 5 927 3442 13 10 0 chr1 44868917 44869309 -152326123 + MTA_Mm LTR MaLR 1 396 0 5 927 7052 125 20 2 chr1 44871137 44872323 -152323109 - L1_Mus3 LINE L1 -7 6631 5402 5 927 32787 80 8 7 chr1 44872318 44877640 -152317792 - L1Md_F2 LINE L1 -12 6570 1248 5 927 2047 80 28 16 chr1 44877640 44877958 -152317474 - RLTRETN_Mm LTR ERVK 0 322 1 5 927 24988 34 11 9 chr1 44877958 44882858 -152312574 - MMETn-int LTR ERVK 0 4844 1 5 927 2047 80 28 16 chr1 44882858 44883176 -152312256 - RLTRETN_Mm LTR ERVK 0 322 1 5 927 1790 108 95 0 chr1 44883176 44883493 -152311939 - L1Md_F2 LINE L1 -4630 1253 907 5 927 1614 199 9 20 chr1 44883493 44883837 -152311595 + RLTR24 LTR ERV1 190 529 0 5 927 198 103 0 0 chr1 44883935 44883964 -152311468 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 5 927 653 324 78 12 chr1 44884070 44884326 -152311106 + MLT1E1A LTR MaLR 405 677 -3 5 927 416 223 220 14 chr1 44884365 44884384 -152311048 + RMER17C LTR ERVK 195 213 -197 5 927 732 83 0 0 chr1 44884384 44884493 -152310939 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 927 416 223 220 14 chr1 44884493 44884614 -152310818 + RMER17C LTR ERVK 214 363 -47 5 927 426 298 64 32 chr1 44885035 44885191 -152310241 + RSINE1 SINE B4 3 163 -2 5 927 660 250 42 67 chr1 44885285 44885675 -152309757 - RMER17C LTR ERVK 0 410 79 5 927 546 16 0 0 chr1 44885675 44885738 -152309694 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 927 550 279 28 59 chr1 44885738 44885856 -152309576 - RMER17C LTR ERVK -288 122 5 5 927 892 75 90 0 chr1 44885856 44885989 -152309443 + B1_Mm SINE Alu 2 146 -1 5 927 428 162 0 35 chr1 44886005 44886120 -152309312 + A-rich Low_complexity Low_complexity 1 111 0 5 927 285 244 70 70 chr1 44886318 44886446 -152308986 + RMER21A LTR ERV1 623 750 -197 5 927 2094 225 97 33 chr1 44886571 44887146 -152308286 - RMER17C-int LTR ERVK 0 3238 2627 5 927 4072 59 19 4 chr1 44887261 44887786 -152307646 - L1Md_F2 LINE L1 -19 6563 6031 5 927 3093 51 5 15 chr1 44888161 44888561 -152306871 + MTA_Mm LTR MaLR 1 396 0 5 927 1598 100 8 4 chr1 44889279 44889520 -152305912 + L1_Mus3 LINE L1 6395 6636 -2 5 927 7737 122 30 7 chr1 44889538 44890750 -152304682 + Lx2 LINE L1 5748 6988 -9 5 927 4934 87 1 20 chr1 44891609 44892310 -152303122 + L1_Mus1 LINE L1 5880 6567 0 5 927 216 97 0 0 chr1 44892317 44892348 -152303084 + (A)n Simple_repeat Simple_repeat 1 31 0 5 927 28 71 0 0 chr1 44893129 44893185 -152302247 + AT_rich Low_complexity Low_complexity 1 56 0 5 927 411 56 0 0 chr1 44893281 44893335 -152302097 + (TATG)n Simple_repeat Simple_repeat 4 57 0 5 927 235 241 0 36 chr1 44893519 44893575 -152301857 - MTC LTR MaLR -367 54 1 5 927 353 246 74 33 chr1 44893575 44893697 -152301735 - MTC-int LTR MaLR 0 1258 1132 5 927 22 0 0 0 chr1 44893698 44893720 -152301712 + AT_rich Low_complexity Low_complexity 1 22 0 5 927 5153 42 5 8 chr1 44893741 44894385 -152301047 - L1Md_F3 LINE L1 -1 6583 5942 5 927 3745 26 0 0 chr1 44894385 44894924 -152300508 + L1Md_F3 LINE L1 5429 5967 -617 5 927 239 133 0 22 chr1 44895015 44895061 -152300371 + GA-rich Low_complexity Low_complexity 1 45 0 5 927 834 334 93 30 chr1 44895061 44895616 -152299816 - MTC-int LTR MaLR -251 1007 318 5 927 558 0 0 0 chr1 44896558 44896620 -152298812 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 927 579 319 19 33 chr1 44896650 44896861 -152298571 - MTC-int LTR MaLR -1008 250 43 5 927 557 14 14 0 chr1 44896923 44896993 -152298439 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 927 374 309 7 22 chr1 44897042 44897181 -152298251 - MTD LTR MaLR -282 137 1 5 927 270 125 0 0 chr1 44898702 44898750 -152296682 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 927 255 282 13 0 chr1 44899873 44899951 -152295481 + GA-rich Low_complexity Low_complexity 2 80 0 5 927 771 21 0 0 chr1 44899976 44900069 -152295363 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 927 326 312 21 41 chr1 44900828 44900925 -152294507 - RSINE1 SINE B4 -69 96 2 5 927 4114 241 118 6 chr1 44901389 44902361 -152293071 + Lx6 LINE L1 6191 7271 -189 5 927 263 324 27 0 chr1 44902431 44902542 -152292890 + Lx7 LINE L1 7208 7321 -375 5 927 438 75 0 0 chr1 44902588 44902655 -152292777 + (TTTTC)n Simple_repeat Simple_repeat 2 68 0 5 927 244 267 13 13 chr1 44902750 44902826 -152292606 + MTEb LTR MaLR 304 379 0 5 927 3020 145 21 2 chr1 44903009 44903487 -152291945 - Lx4A LINE L1 -73 6985 6499 5 927 984 256 98 18 chr1 44903857 44904184 -152291248 + Lx9 LINE L1 7088 7440 -204 5 927 441 202 0 0 chr1 44904204 44904293 -152291139 + L1_Mur3 LINE L1 3682 3770 -2110 5 927 232 211 28 14 chr1 44904288 44904360 -152291072 + L1_Rod LINE L1 5160 5232 -615 5 927 2352 294 70 51 chr1 44904354 44905251 -152290181 + Lx7 LINE L1 6398 7311 -385 5 927 28 86 0 0 chr1 44905437 44905507 -152289925 + AT_rich Low_complexity Low_complexity 1 70 0 5 927 24 0 0 0 chr1 44905633 44905657 -152289775 + AT_rich Low_complexity Low_complexity 1 24 0 5 927 240 86 0 0 chr1 44905785 44905820 -152289612 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 927 27 81 0 0 chr1 44906861 44906923 -152288509 + AT_rich Low_complexity Low_complexity 1 62 0 5 927 26 0 0 0 chr1 44907178 44907204 -152288228 + AT_rich Low_complexity Low_complexity 1 26 0 5 927 329 47 0 0 chr1 44907205 44907248 -152288184 - Lx3A LINE L1 -10 6971 6929 5 927 250 350 35 114 chr1 44908554 44908809 -152286623 + ORR1E LTR MaLR 96 330 -29 5 927 657 341 60 8 chr1 44908846 44909112 -152286320 - RMER15 LTR ERVL 0 575 296 5 927 867 280 59 0 chr1 44909117 44909356 -152286076 + Lx6 LINE L1 7190 7442 -18 5 927 1594 258 92 50 chr1 44909543 44910447 -152284985 + Lx7 LINE L1 3530 4063 -1817 5 927 728 304 4 25 chr1 44910765 44911008 -152284424 + L1_Mur3 LINE L1 829 1066 -6646 5 927 544 200 111 6 chr1 44911024 44911092 -152284340 + Lx7 LINE L1 4553 4622 -1258 5 927 549 105 0 0 chr1 44911092 44911187 -152284245 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 927 544 200 111 6 chr1 44911187 44911289 -152284143 + Lx7 LINE L1 4623 4740 -1140 5 927 4152 108 16 0 chr1 44911336 44911956 -152283476 - Lx3A LINE L1 -373 5513 4884 5 927 9153 119 7 14 chr1 44911949 44913432 -152282000 + Lx3A LINE L1 5504 6973 -8 5 927 933 256 79 4 chr1 44913514 44913792 -152281640 + Lx7 LINE L1 4937 5235 -645 5 927 1890 226 52 72 chr1 44913819 44914334 -152281098 + RLTR20D LTR ERVK 51 555 -13 5 927 1814 223 120 42 chr1 44914359 44915211 -152280221 + Lx7 LINE L1 5246 6187 -1509 5 927 2804 167 28 79 chr1 44915212 44915599 -152279833 + L1VL4 LINE L1 194 550 -5752 5 927 2470 90 161 143 chr1 44915599 44916102 -152279330 - RLTR1B LTR ERV1 0 512 1 5 927 2804 167 28 79 chr1 44916102 44916151 -152279281 + L1VL4 LINE L1 551 595 -5707 5 927 2717 55 0 25 chr1 44916151 44916213 -152279219 - ORR1A0 LTR MaLR 0 346 287 5 927 180 0 0 0 chr1 44916213 44916233 -152279199 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 927 2717 55 0 25 chr1 44916233 44916525 -152278907 - ORR1A0 LTR MaLR -60 286 1 5 927 13419 56 25 1 chr1 44916525 44918274 -152277158 - ORR1A0-int LTR MaLR 0 1792 1 5 927 2563 58 0 111 chr1 44918274 44918663 -152276769 - ORR1A0 LTR MaLR 0 346 1 5 927 2804 167 28 79 chr1 44918663 44918868 -152276564 + L1VL4 LINE L1 596 803 -5499 5 927 4887 112 20 1 chr1 44918858 44919623 -152275809 + L1_Mur1 LINE L1 3588 4366 -1520 5 927 27 0 0 0 chr1 44919654 44919681 -152275751 + AT_rich Low_complexity Low_complexity 1 27 0 5 927 488 275 166 79 chr1 44919820 44920061 -152275371 + ORR1D2 LTR MaLR 107 368 -2 5 927 287 91 23 0 chr1 44921071 44921115 -152274317 - Lx LINE L1 -30 6624 6580 5 927 1203 84 3 11 chr1 44921405 44921602 -152273830 - L1Md_F2 LINE L1 0 6584 6385 5 927 1624 145 27 27 chr1 44921792 44922089 -152273343 - RLTR11A LTR ERVK 0 528 232 5 927 346 203 0 0 chr1 44922088 44922152 -152273280 + tRNA-Lys-AAG tRNA tRNA 13 76 0 5 927 1130 163 19 5 chr1 44922155 44922365 -152273067 - RLTR11A LTR ERVK 0 528 316 5 927 772 311 9 23 chr1 44922822 44923039 -152272393 - B4A SINE B4 -74 218 5 5 927 288 265 76 29 chr1 44923058 44923163 -152272269 + MIR SINE MIR 84 193 -69 5 927 501 17 0 0 chr1 44923531 44923589 -152271843 + (AATAG)n Simple_repeat Simple_repeat 2 59 0 5 927 225 0 0 0 chr1 44923808 44923833 -152271599 + (TTA)n Simple_repeat Simple_repeat 2 26 0 5 927 3534 228 147 43 chr1 44923837 44925771 -152269661 - Lx3B LINE L1 -2 6971 4841 5 927 393 269 92 51 chr1 44925841 44926037 -152269395 - MYSERV16_I-int LTR ERVK -1623 703 500 5 927 338 0 24 0 chr1 44926297 44926339 -152269093 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 5 927 7097 69 23 5 chr1 44926355 44927297 -152268135 - L1Md_F2 LINE L1 -13 6569 5611 5 927 220 191 98 128 chr1 44927297 44927399 -152268033 + B1_Mur4 SINE Alu 44 142 -8 5 927 244 262 16 0 chr1 44927438 44927499 -152267933 - Lx8 LINE L1 -198 7275 7214 5 927 501 71 0 0 chr1 44927499 44927569 -152267863 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 5 927 1142 288 135 2 chr1 44927570 44927991 -152267441 - Lx8 LINE L1 -248 7225 6749 5 927 514 262 275 18 chr1 44928030 44928253 -152267179 + B4A SINE B4 2 282 -10 5 927 268 288 97 26 chr1 44928253 44928367 -152267065 + B1F SINE Alu 10 131 -18 5 927 962 270 108 19 chr1 44928857 44929218 -152266214 + MTD LTR MaLR 18 379 0 5 927 775 174 0 45 chr1 44929264 44929420 -152266012 + B1_Mur4 SINE Alu 1 149 -1 5 927 229 25 73 24 chr1 44929717 44929758 -152265674 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 927 2034 199 15 31 chr1 44931012 44931261 -152264171 - Lx3B LINE L1 -1033 4844 4600 5 927 4562 94 40 39 chr1 44931261 44931632 -152263800 + RMER17A LTR ERVK 1 370 -381 5 927 810 0 0 0 chr1 44931632 44931722 -152263710 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 5 927 4562 94 40 39 chr1 44931722 44932100 -152263332 + RMER17A LTR ERVK 371 750 -1 5 927 2034 199 15 31 chr1 44932100 44932307 -152263125 - Lx3B LINE L1 -1278 4599 4395 5 927 2585 203 20 3 chr1 44932747 44933351 -152262081 - Lx3B LINE L1 -2126 3754 3141 5 927 62 92 0 0 chr1 44933578 44933752 -152261680 + AT_rich Low_complexity Low_complexity 1 174 0 5 927 2714 98 29 24 chr1 44934459 44934876 -152260556 + Lx2 LINE L1 6579 6997 0 5 927 732 340 60 22 chr1 44936729 44936997 -152258435 - MTE2b LTR MaLR -13 366 89 5 927 972 326 112 21 chr1 44937267 44938557 -152256875 + L1M2 LINE L1 2637 4044 -2099 6 927 291 246 53 45 chr1 44938559 44938691 -152256741 + L1MD LINE L1 4134 4266 -1880 6 927 246 312 89 6 chr1 44938657 44938973 -152256459 + L1M2 LINE L1 4342 4683 -1457 6 927 16955 154 33 25 chr1 44938975 44940710 -152254722 + L1Md_F2 LINE L1 407 2160 -3723 6 927 1070 72 7 0 chr1 44940710 44940848 -152254584 + B1_Mus2 SINE Alu 3 141 -6 6 927 431 18 18 0 chr1 44940853 44940909 -152254523 + (CATA)n Simple_repeat Simple_repeat 2 58 0 6 927 16955 148 17 21 chr1 44940909 44943045 -152252387 + L1Md_F2 LINE L1 2161 4294 -1589 6 927 5332 54 3 6 chr1 44943042 44943714 -152251718 + L1Md_F LINE L1 272 941 -5578 6 927 7954 79 3 1 chr1 44944107 44945172 -152250260 + L1Md_F2 LINE L1 4520 5586 -297 6 927 7366 69 12 9 chr1 44945172 44946154 -152249278 + L1Md_F2 LINE L1 5587 6571 -11 6 927 26 0 0 0 chr1 44947803 44947829 -152247603 + AT_rich Low_complexity Low_complexity 1 26 0 6 927 22 0 0 0 chr1 44948005 44948027 -152247405 + AT_rich Low_complexity Low_complexity 1 22 0 6 927 2052 223 34 34 chr1 44948107 44948632 -152246800 - RLTR11A2 LTR ERVK 0 527 3 6 927 793 127 0 0 chr1 44948633 44948759 -152246673 - RLTR11B LTR ERVK -327 126 1 6 927 238 375 60 42 chr1 44949264 44949481 -152245951 + LTR16B1 LTR ERVL 91 311 -169 6 927 266 333 12 111 chr1 44950103 44950200 -152245232 - B1F2 SINE Alu -2 147 56 6 927 207 0 0 0 chr1 44950200 44950223 -152245209 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 927 266 333 12 111 chr1 44950223 44950287 -152245145 - B1F2 SINE Alu -94 55 2 6 927 277 276 0 0 chr1 44950571 44950629 -152244803 + PB1D10 SINE Alu 46 103 -14 6 927 3713 87 2 13 chr1 44951425 44951947 -152243485 - L1Md_F2 LINE L1 0 6582 6067 6 927 1269 209 170 15 chr1 44952209 44952539 -152242893 - RLTR24 LTR ERV1 -56 473 93 6 927 21 0 0 0 chr1 44952752 44952773 -152242659 + AT_rich Low_complexity Low_complexity 1 21 0 6 927 3034 173 26 54 chr1 44952951 44953563 -152241869 + RLTR17 LTR ERVK 98 692 0 6 115 33367 73 0 17 chr1 44953894 44959058 -152236374 + L1Md_F2 LINE L1 511 5586 -297 6 928 7937 49 7 1 chr1 44959058 44960046 -152235386 + L1Md_F2 LINE L1 5587 6580 -2 6 928 1217 38 6 0 chr1 44960153 44960312 -152235120 + L1Md_T LINE L1 171 330 -6192 6 928 4640 0 0 0 chr1 44960302 44960828 -152234604 + L1Md_Gf LINE L1 617 1142 -5380 6 928 35362 41 0 0 chr1 44960794 44965178 -152230254 + L1Md_T LINE L1 1206 5589 -297 6 928 8924 7 0 0 chr1 44965178 44966174 -152229258 + L1Md_T LINE L1 5590 6585 0 6 928 13480 155 15 27 chr1 44966853 44970103 -152225329 - L1_Mus4 LINE L1 -269 6367 3150 6 928 2362 176 19 0 chr1 44970099 44970514 -152224918 + L1_Mm LINE L1 5286 5708 -175 6 928 37 0 0 0 chr1 44970818 44970855 -152224577 + AT_rich Low_complexity Low_complexity 1 37 0 6 928 881 144 203 0 chr1 44971190 44971377 -152224055 + URR1B DNA MER1_type 1 225 0 6 928 278 324 146 10 chr1 44971632 44971735 -152223697 + B4A SINE B4 2 118 -174 6 928 364 293 31 26 chr1 44971807 44972000 -152223432 - L1_Mur3 LINE L1 -430 5450 5257 6 928 27 56 0 40 chr1 44972210 44972284 -152223148 + AT_rich Low_complexity Low_complexity 1 71 0 6 928 5154 97 207 19 chr1 44972655 44973581 -152221851 + L1VL4 LINE L1 217 1400 -2159 6 928 2859 89 7 2 chr1 44973581 44973985 -152221447 + L1_Mus3 LINE L1 6227 6632 -6 6 928 5154 88 12 32 chr1 44973985 44974271 -152221161 + L1VL4 LINE L1 1401 1663 -1896 6 928 363 323 60 35 chr1 44974331 44974474 -152220958 - B1F SINE Alu -1 148 2 6 928 3596 88 12 0 chr1 44974837 44975429 -152220003 - L1_Mus3 LINE L1 -495 6071 5473 6 928 3039 114 90 14 chr1 44975429 44975917 -152219515 + L1_Mus3 LINE L1 6114 6638 0 6 928 273 163 0 0 chr1 44977112 44977161 -152218271 + A-rich Low_complexity Low_complexity 1 49 0 6 928 2597 180 80 89 chr1 44977367 44978082 -152217350 + RMER17B LTR ERVK 251 958 0 6 928 579 287 66 10 chr1 44978082 44978279 -152217153 - Lx6 LINE L1 -1252 6208 6001 6 928 378 0 0 0 chr1 44978383 44978425 -152217007 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 928 414 0 0 0 chr1 44979157 44979203 -152216229 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 928 4169 186 105 33 chr1 44979411 44979550 -152215882 - RLTR25B LTR ERVK -19 1009 807 6 928 477 0 0 0 chr1 44979550 44979603 -152215829 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 928 4169 186 105 33 chr1 44979603 44980077 -152215355 - RLTR25B LTR ERVK -222 806 329 6 928 387 0 0 0 chr1 44980077 44980120 -152215312 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 928 4169 186 105 33 chr1 44980120 44980446 -152214986 - RLTR25B LTR ERVK -700 328 2 6 928 21 36 0 0 chr1 44980492 44980520 -152214912 + AT_rich Low_complexity Low_complexity 1 28 0 6 928 183 204 0 0 chr1 44981124 44981168 -152214264 + CT-rich Low_complexity Low_complexity 1 44 0 6 928 4150 194 40 91 chr1 44981914 44982684 -152212748 - L1_Mur2 LINE L1 -1405 4472 3739 6 928 4520 48 12 43 chr1 44982684 44983288 -152212144 - L1_Mus2 LINE L1 0 6566 5982 6 928 4150 194 40 91 chr1 44983288 44983733 -152211699 - L1_Mur2 LINE L1 -2139 3738 3319 6 928 9405 210 73 18 chr1 44983728 44985614 -152209818 - L1_Mur3 LINE L1 -1831 4049 2057 6 928 312 91 0 0 chr1 44985614 44985658 -152209774 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 928 9405 210 73 18 chr1 44985658 44986299 -152209133 - L1_Mur3 LINE L1 -3824 2056 1383 6 928 9244 138 22 5 chr1 44986299 44988667 -152206765 - L1_Mus3 LINE L1 -6 6632 4222 6 928 3038 82 7 0 chr1 44988642 44989054 -152206378 - L1Md_F2 LINE L1 -449 6133 5719 6 928 3331 88 0 19 chr1 44989061 44989535 -152205897 + L1Md_F2 LINE L1 6115 6579 -3 6 928 2099 140 20 0 chr1 44989537 44989895 -152205537 - L1_Mus3 LINE L1 -1649 4234 3870 6 928 2921 136 112 26 chr1 44989911 44990453 -152204979 - RLTR1D LTR ERV1 -16 589 1 6 928 13946 187 20 10 chr1 44990453 44991184 -152204248 - L1VL4 LINE L1 -2245 3898 3137 6 928 205 29 29 29 chr1 44991184 44991219 -152204213 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 928 13946 148 35 15 chr1 44991219 44993856 -152201576 - L1VL4 LINE L1 -778 3136 455 6 928 646 264 5 25 chr1 44993853 44994051 -152201381 - L1_Mur2 LINE L1 -6004 708 515 6 928 1835 191 48 30 chr1 44994312 44994889 -152200543 - L1_Mur2 LINE L1 -4202 1675 1091 6 928 216 0 0 0 chr1 44994889 44994913 -152200519 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 928 1175 225 49 104 chr1 44994913 44995166 -152200266 - L1_Mur2 LINE L1 -6572 1156 892 6 928 372 326 64 39 chr1 44995775 44996181 -152199251 - RNERVK23-int LTR ERVK -4487 3730 3315 6 928 274 23 47 0 chr1 44996250 44996293 -152199139 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 6 928 2839 209 26 19 chr1 44996926 44997502 -152197930 + RLTR33 LTR ERVK 99 678 0 6 928 1293 87 11 26 chr1 44998362 44998552 -152196880 - B2_Mm2 SINE B2 -5 190 4 6 928 2216 194 48 18 chr1 44998877 44999318 -152196114 + RLTR28 LTR ERVL 1 454 -70 6 928 210 37 0 0 chr1 44999803 44999830 -152195602 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 928 342 0 0 0 chr1 45001332 45001370 -152194062 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 928 204 125 0 0 chr1 45002133 45002165 -152193267 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 928 224 258 29 29 chr1 45002238 45002306 -152193126 - B4 SINE B4 -211 81 14 3 928 8150 47 2 0 chr1 45002614 45003832 -152191600 - L1Md_F2 LINE L1 -12 6570 5351 4 928 2082 171 33 0 chr1 45003968 45004336 -152191096 - L1_Mur2 LINE L1 -215 5662 5283 5 928 7710 75 16 7 chr1 45004406 45006032 -152189400 - L1_Mus2 LINE L1 0 6566 4916 6 928 902 188 16 10 chr1 45006044 45006238 -152189194 - Lx2 LINE L1 -18 6979 6785 7 928 1052 101 31 12 chr1 45006216 45006377 -152189055 - Lx2 LINE L1 -116 6881 6718 7 928 764 106 49 0 chr1 45006370 45006493 -152188939 - L1_Mur2 LINE L1 -598 5279 5151 5 928 528 167 39 0 chr1 45006513 45006615 -152188817 + Lx4A LINE L1 6953 7058 0 8 928 222 37 0 0 chr1 45007158 45007185 -152188247 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 9 928 1923 199 65 71 chr1 45007199 45007723 -152187709 - RLTR20B3 LTR ERVK -56 521 1 1 928 936 163 0 0 chr1 45007989 45008161 -152187271 + (CTATT)n Simple_repeat Simple_repeat 5 176 0 1 928 411 21 0 0 chr1 45008161 45008209 -152187223 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 928 320 43 0 21 chr1 45008829 45008876 -152186556 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 928 657 275 65 21 chr1 45008878 45009064 -152186368 - B3 SINE B2 -17 199 6 1 928 339 58 68 23 chr1 45009381 45009469 -152185963 + (TTTTTG)n Simple_repeat Simple_repeat 1 92 0 1 928 1152 75 0 0 chr1 45009471 45009618 -152185814 - B1_Mm SINE Alu 0 147 1 1 928 216 0 0 0 chr1 45009620 45009644 -152185788 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 928 2828 124 33 0 chr1 45010172 45010630 -152184802 - Lx4A LINE L1 -831 6227 5755 1 928 3931 163 42 13 chr1 45010631 45011341 -152184091 + Lx4A LINE L1 6328 7058 0 1 928 25 90 0 0 chr1 45011402 45011469 -152183963 + AT_rich Low_complexity Low_complexity 1 67 0 1 928 5887 160 54 17 chr1 45012131 45013613 -152181819 - Lx LINE L1 -1 6653 5141 2 928 868 254 0 98 chr1 45015169 45015474 -152179958 + L1VL1 LINE L1 229 503 -5919 2 928 2342 180 65 0 chr1 45015610 45016104 -152179328 + L1_Mus2 LINE L1 2768 3293 -2590 2 928 35322 36 1 1 chr1 45016105 45022380 -152173052 + L1Md_T LINE L1 1 5589 -297 2 928 8941 8 0 0 chr1 45022380 45023376 -152172056 + L1Md_T LINE L1 5590 6585 0 2 928 16738 122 7 14 chr1 45023382 45025235 -152170197 + L1_Mus2 LINE L1 3251 5111 -772 2 928 836 81 145 0 chr1 45025235 45025359 -152170073 + B1_Mus1 SINE Alu 2 143 -5 2 928 16738 108 3 17 chr1 45025359 45026856 -152168576 + L1_Mus2 LINE L1 5112 6565 -1 2 928 279 0 0 0 chr1 45027015 45027046 -152168386 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 928 1664 237 141 95 chr1 45027112 45027294 -152168138 - RMER19B LTR ERVK 0 902 716 2 928 1893 130 78 86 chr1 45027294 45027690 -152167742 - RLTR9C LTR ERVK 0 393 1 2 928 1664 237 141 95 chr1 45027690 45027992 -152167440 - RMER19B LTR ERVK -187 715 366 2 928 1065 99 0 0 chr1 45027992 45028134 -152167298 + B1_Mus1 SINE Alu 1 142 -6 2 928 539 29 0 14 chr1 45028135 45028205 -152167227 + (TAA)n Simple_repeat Simple_repeat 1 69 0 2 928 1664 237 141 95 chr1 45028205 45028245 -152167187 - RMER19B LTR ERVK -537 365 343 2 928 4435 58 9 2 chr1 45028245 45028801 -152166631 + LTRIS2 LTR ERV1 5 564 0 3 928 1664 237 141 95 chr1 45028801 45028841 -152166591 - RMER19B LTR ERVK -560 342 308 2 928 702 310 57 4 chr1 45028882 45029144 -152166288 - Lx8 LINE L1 -780 6693 6418 3 928 1039 198 58 133 chr1 45029181 45029542 -152165890 + RMER16 LTR ERVK 198 531 -2 3 928 302 362 8 0 chr1 45029545 45029672 -152165760 - Lx8 LINE L1 -1065 6408 6281 3 928 225 160 26 39 chr1 45029857 45029935 -152165497 + (TTATA)n Simple_repeat Simple_repeat 4 80 0 3 928 26 64 0 0 chr1 45030070 45030117 -152165315 + AT_rich Low_complexity Low_complexity 1 47 0 3 928 28 71 0 0 chr1 45030462 45030518 -152164914 + AT_rich Low_complexity Low_complexity 1 56 0 3 928 752 282 15 0 chr1 45030681 45030887 -152164545 - B3 SINE B2 -7 209 1 3 928 195 189 0 0 chr1 45031155 45031208 -152164224 + A-rich Low_complexity Low_complexity 1 53 0 3 928 2645 66 19 30 chr1 45031264 45031625 -152163807 + L1_Mus1 LINE L1 6205 6561 -6 3 928 241 286 36 0 chr1 45031996 45032080 -152163352 + GA-rich Low_complexity Low_complexity 2 88 0 3 928 306 347 119 10 chr1 45032436 45032637 -152162795 + L1MEf LINE L1 1122 1344 -5079 4 928 22 35 0 0 chr1 45032780 45032809 -152162623 + AT_rich Low_complexity Low_complexity 1 29 0 4 928 573 317 115 72 chr1 45032896 45033524 -152161908 + L1MEf LINE L1 1796 2450 -4587 4 928 667 308 35 5 chr1 45033786 45033985 -152161447 + B3 SINE B2 6 210 -6 4 928 1006 243 71 79 chr1 45034179 45034546 -152160886 + Lx3_Mus LINE L1 4 367 -6617 4 928 30198 103 30 12 chr1 45034548 45040806 -152154626 + Lx3_Mus LINE L1 676 7004 -5 4 928 819 186 0 0 chr1 45041609 45041770 -152153662 + CT-rich Low_complexity Low_complexity 3 163 0 4 928 271 86 0 0 chr1 45042815 45042850 -152152582 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 928 858 167 0 0 chr1 45042850 45043030 -152152402 + GA-rich Low_complexity Low_complexity 1 180 0 4 928 228 313 12 12 chr1 45043408 45043492 -152151940 + Lx5 LINE L1 5808 5891 -1159 4 928 27 0 0 0 chr1 45043727 45043754 -152151678 + AT_rich Low_complexity Low_complexity 1 27 0 4 928 2844 309 68 12 chr1 45043801 45044677 -152150755 + MTE-int LTR MaLR 602 1527 -53 4 928 264 330 10 52 chr1 45044677 45044773 -152150659 + ORR1E LTR MaLR 1 92 -267 5 928 716 122 8 0 chr1 45044830 45044953 -152150479 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 5 928 465 19 0 0 chr1 45044964 45045018 -152150414 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 928 613 329 62 5 chr1 45045161 45045369 -152150063 + ORR1E LTR MaLR 140 359 0 5 928 6498 151 19 11 chr1 45045890 45047537 -152147895 - Lx LINE L1 -2 6652 4992 5 928 778 127 0 0 chr1 45047539 45047649 -152147783 - B1_Mus1 SINE Alu -34 114 5 5 928 456 171 8 125 chr1 45047553 45047673 -152147759 - ID_B1 SINE B4 -45 179 74 5 928 520 257 113 99 chr1 45047691 45048054 -152147378 - RLTR9A LTR ERVK 0 368 1 5 928 4925 160 65 29 chr1 45048580 45049133 -152146299 - RMER16-int LTR ERVK -1583 3823 3429 5 928 3073 61 0 8 chr1 45049133 45049530 -152145902 - MTA_Mm LTR MaLR -2 394 1 5 928 4925 108 46 22 chr1 45049530 45049953 -152145479 - RMER16-int LTR ERVK -1978 3428 3001 5 928 6677 78 5 0 chr1 45049953 45050839 -152144593 - L1Md_F2 LINE L1 -1 6581 5692 5 928 15671 101 6 10 chr1 45050836 45053834 -152141598 - L1Md_A LINE L1 -2483 3400 418 6 928 4760 184 70 74 chr1 45053835 45056393 -152139039 - RMER16-int LTR ERVK -2646 4598 610 5 928 195 42 0 0 chr1 45056393 45056417 -152139015 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 928 3263 39 23 0 chr1 45056862 45057248 -152138184 + MTA_Mm LTR MaLR 2 396 0 6 928 330 125 0 0 chr1 45057343 45057407 -152138025 - L1Md_F2 LINE L1 -1 6581 6518 6 928 787 169 124 91 chr1 45057408 45057692 -152137740 - RMER16-int LTR ERVK -4982 424 255 6 928 22 70 0 0 chr1 45057823 45057866 -152137566 + AT_rich Low_complexity Low_complexity 1 43 0 6 928 500 281 29 77 chr1 45058113 45058436 -152136996 - RLTR9A LTR ERVK -2 407 78 6 928 2469 18 0 0 chr1 45058439 45058720 -152136712 + L1Md_T LINE L1 5306 5586 -297 6 928 8474 32 0 0 chr1 45058720 45059716 -152135716 + L1Md_T LINE L1 5587 6582 0 6 928 7488 169 19 11 chr1 45059761 45061207 -152134225 - L1_Mur2 LINE L1 -915 4962 3505 6 928 6430 126 37 11 chr1 45061204 45063023 -152132409 - L1VL2 LINE L1 -1680 1935 65 6 928 33 25 0 0 chr1 45063347 45063387 -152132045 + AT_rich Low_complexity Low_complexity 1 40 0 7 928 21 36 0 0 chr1 45063957 45063985 -152131447 + AT_rich Low_complexity Low_complexity 1 28 0 7 928 884 208 174 43 chr1 45063986 45064246 -152131186 + Lx5 LINE L1 6691 7010 -48 7 928 23 54 0 0 chr1 45064330 45064367 -152131065 + AT_rich Low_complexity Low_complexity 1 37 0 7 928 1645 184 29 0 chr1 45064737 45065080 -152130352 - L1_Mur3 LINE L1 -1878 4002 3650 7 928 239 350 8 8 chr1 45065087 45065208 -152130224 - Lx5 LINE L1 -3 7047 6927 7 928 3072 171 28 5 chr1 45065205 45065322 -152130110 + L1_Mur1 LINE L1 2496 2609 -3277 7 928 351 0 0 0 chr1 45065322 45065361 -152130071 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 928 3072 171 28 5 chr1 45065361 45065854 -152129578 + L1_Mur1 LINE L1 2610 3118 -2768 7 928 2081 147 24 3 chr1 45065855 45066053 -152129379 + L1_Mur1 LINE L1 3486 3683 -2203 7 928 780 94 0 0 chr1 45066053 45066181 -152129251 + (CA)n Simple_repeat Simple_repeat 1 128 0 7 928 2081 147 24 3 chr1 45066181 45066363 -152129069 + L1_Mur1 LINE L1 3684 3873 -2013 7 928 4475 158 12 25 chr1 45066366 45067375 -152128057 + L1Md_F2 LINE L1 420 1414 -4469 7 928 13840 69 5 1 chr1 45067360 45069201 -152126231 + L1Md_F2 LINE L1 3738 5585 -298 7 928 7332 81 6 5 chr1 45069202 45070197 -152125235 + L1Md_F2 LINE L1 5587 6582 0 7 928 535 179 0 10 chr1 45070198 45070294 -152125138 - L1VL1 LINE L1 -6304 118 24 8 928 5917 179 26 68 chr1 45070339 45070817 -152124615 - L1_Mur3 LINE L1 -3258 2622 2142 7 928 336 127 0 0 chr1 45070817 45070872 -152124560 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 928 5917 180 28 66 chr1 45070872 45071951 -152123481 - L1_Mur3 LINE L1 -3739 2141 1143 7 928 3389 134 27 176 chr1 45071951 45072901 -152122531 + RMER17D2 LTR ERVK 1 809 0 8 928 3298 186 55 34 chr1 45072901 45073453 -152121979 - L1_Mur3 LINE L1 -6586 1142 559 7 928 781 282 10 5 chr1 45073488 45073695 -152121737 - B3 SINE B2 -7 209 2 8 928 508 273 13 109 chr1 45073697 45074000 -152121432 - L1_Mur3 LINE L1 -812 5485 5141 8 928 711 280 74 5 chr1 45074022 45074212 -152121220 + ORR1D1 LTR MaLR 172 374 0 8 928 25 0 0 0 chr1 45074225 45074250 -152121182 + AT_rich Low_complexity Low_complexity 1 25 0 8 928 430 345 73 81 chr1 45076379 45076638 -152118794 - MTE2a LTR MaLR -122 257 1 8 928 516 59 0 0 chr1 45078689 45078757 -152116675 + (GA)n Simple_repeat Simple_repeat 1 68 0 8 928 3086 289 27 18 chr1 45079359 45080298 -152115134 + Lx8 LINE L1 6380 7326 -147 8 928 472 305 44 39 chr1 45080321 45080502 -152114930 + B3A SINE B2 1 182 -16 9 928 198 103 0 0 chr1 45080516 45080545 -152114887 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 928 23 54 0 0 chr1 45080822 45080859 -152114573 + AT_rich Low_complexity Low_complexity 1 37 0 9 928 31 82 0 0 chr1 45081408 45081481 -152113951 + AT_rich Low_complexity Low_complexity 1 73 0 9 928 1126 302 37 9 chr1 45081827 45082154 -152113278 - ORR1D2 LTR MaLR 0 370 35 9 928 306 0 0 0 chr1 45082252 45082286 -152113146 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 9 928 6456 102 10 4 chr1 45082401 45084022 -152111410 + L1VL4 LINE L1 210 1841 -1718 9 928 488 125 0 0 chr1 45084016 45084088 -152111344 - MusHAL1 LINE L1 -1639 1073 1002 9 928 4278 99 68 40 chr1 45084088 45084702 -152110730 + L1VL4 LINE L1 2155 2780 -779 9 928 336 24 0 0 chr1 45084702 45084743 -152110689 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 928 4278 99 68 40 chr1 45084743 45084897 -152110535 + L1VL4 LINE L1 2781 2944 -615 9 928 4650 60 22 3 chr1 45084900 45085502 -152109930 + L1_Mus1 LINE L1 5954 6566 -1 9 928 231 61 0 0 chr1 45085679 45085712 -152109720 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 1 928 288 0 0 0 chr1 45085896 45085928 -152109504 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 928 2416 152 64 13 chr1 45087890 45088342 -152107090 + Lx3C LINE L1 6500 6974 -2 1 928 216 0 0 0 chr1 45088626 45088650 -152106782 + (T)n Simple_repeat Simple_repeat 1 24 0 1 929 462 301 56 18 chr1 45089275 45089489 -152105943 + ID_B1 SINE B4 4 208 -16 1 929 338 326 0 22 chr1 45089483 45089574 -152105858 + B4A SINE B4 128 216 -76 1 929 225 242 32 0 chr1 45089628 45089690 -152105742 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1 929 232 190 84 48 chr1 45089799 45089882 -152105550 + L1MA7 LINE L1 6124 6209 -82 1 929 1133 55 7 0 chr1 45090161 45090306 -152105126 - B1_Mm SINE Alu 0 147 2 1 929 2261 167 45 2 chr1 45090332 45090734 -152104698 - MTC LTR MaLR 0 421 3 1 929 412 256 99 68 chr1 45091161 45091455 -152103977 + L1MC5 LINE L1 7614 7916 -45 1 929 320 59 20 0 chr1 45091845 45091896 -152103536 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1 929 1018 66 14 21 chr1 45092592 45092732 -152102700 + B1_Mus2 SINE Alu 1 139 -8 1 929 648 0 0 0 chr1 45093236 45093308 -152102124 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 929 1151 51 32 0 chr1 45093436 45093594 -152101838 - L1Md_F2 LINE L1 -1 6581 6419 1 929 574 106 4 3 chr1 45094309 45094406 -152101026 + L1_Mm LINE L1 4842 4957 -1183 1 929 12221 63 0 5 chr1 45094408 45096685 -152098747 - L1Md_F2 LINE L1 -15 6567 4302 1 929 849 121 0 22 chr1 45096682 45096817 -152098615 + L1_Mus3 LINE L1 3688 3819 -2064 1 929 7215 110 104 1 chr1 45096805 45098314 -152097118 + L1_Mus3 LINE L1 4923 6631 -7 1 929 481 299 29 35 chr1 45098314 45098487 -152096945 + B3A SINE B2 27 198 0 1 929 2212 208 40 15 chr1 45098617 45099086 -152096346 - Lx5 LINE L1 0 7058 6578 1 929 346 194 160 35 chr1 45099091 45099235 -152096197 + MTC-int LTR MaLR 1071 1232 -26 1 929 842 275 32 77 chr1 45099237 45099548 -152095884 + MTD LTR MaLR 115 411 -8 1 929 2680 179 20 45 chr1 45100563 45101024 -152094408 - Lx5 LINE L1 -938 6112 5655 1 929 518 52 0 0 chr1 45101024 45101101 -152094331 + L1Md_F2 LINE L1 6502 6578 -4 1 929 2680 189 7 42 chr1 45101101 45101315 -152094117 - Lx5 LINE L1 -223 5654 5446 1 929 327 49 0 0 chr1 45101315 45101356 -152094076 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 929 2680 189 7 42 chr1 45101356 45101444 -152093988 - Lx5 LINE L1 -432 5445 5354 1 929 1642 233 36 19 chr1 45101446 45101805 -152093627 + Lx5 LINE L1 6127 6491 -559 1 929 949 149 122 18 chr1 45101805 45102026 -152093406 - ORR1A2 LTR MaLR 0 346 131 1 929 1165 62 7 0 chr1 45102078 45102224 -152093208 - B1_Mus2 SINE Alu 0 147 1 1 929 1223 264 43 7 chr1 45102226 45102508 -152092924 + Lx5 LINE L1 6754 7045 -5 1 929 22 80 0 0 chr1 45102601 45102651 -152092781 + AT_rich Low_complexity Low_complexity 1 50 0 1 929 638 292 24 21 chr1 45102849 45103041 -152092391 - B3A SINE B2 -6 189 1 1 929 262 71 86 0 chr1 45103985 45104055 -152091377 + A-rich Low_complexity Low_complexity 3 78 0 1 929 16609 77 6 19 chr1 45104291 45106400 -152089032 + L1Md_Gf LINE L1 483 2641 -3245 1 929 4860 57 7 0 chr1 45106400 45107020 -152088412 - L1Md_F2 LINE L1 0 6582 5959 1 929 16609 83 7 15 chr1 45107020 45107961 -152087471 + L1Md_Gf LINE L1 2642 3595 -2291 1 929 352 42 21 0 chr1 45107951 45107999 -152087433 + L1_Mm LINE L1 5574 5622 -261 1 929 234 146 42 0 chr1 45107993 45108041 -152087391 + L1Md_Gf LINE L1 3546 3595 -2291 1 929 8050 51 3 0 chr1 45108045 45109037 -152086395 + L1Md_F2 LINE L1 5588 6582 0 1 929 6307 50 3 3 chr1 45109045 45109828 -152085604 + L1Md_F2 LINE L1 5800 6582 0 1 929 1036 89 0 7 chr1 45109850 45109997 -152085435 + B1_Mus2 SINE Alu 2 147 0 1 929 384 111 0 0 chr1 45109997 45110069 -152085363 + (A)n Simple_repeat Simple_repeat 1 72 0 1 929 756 136 0 0 chr1 45110115 45110240 -152085192 + (GGAA)n Simple_repeat Simple_repeat 3 127 0 1 929 3358 43 0 0 chr1 45110428 45110824 -152084608 - MTA_Mm LTR MaLR 0 396 1 1 929 9541 24 0 0 chr1 45110824 45111922 -152083510 - MTA_Mm-int LTR MaLR 0 1098 1 1 929 3394 40 0 0 chr1 45111922 45112318 -152083114 - MTA_Mm LTR MaLR 0 396 1 1 929 357 189 0 0 chr1 45112707 45112802 -152082630 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 929 696 12 0 0 chr1 45112802 45112883 -152082549 + (GA)n Simple_repeat Simple_repeat 1 81 0 1 929 600 332 62 17 chr1 45112956 45113314 -152082118 - Lx8 LINE L1 -6 7467 7094 1 929 375 286 57 9 chr1 45113332 45113438 -152081994 + B3 SINE B2 104 214 -2 1 929 1416 158 11 15 chr1 45113534 45113797 -152081635 - Lx2 LINE L1 0 6997 6736 1 929 16719 184 30 10 chr1 45113798 45114202 -152081230 - L1VL4 LINE L1 -861 5025 4616 1 929 2411 136 26 17 chr1 45114202 45114620 -152080812 + BGLII_Mus LTR ERVK 1 422 0 1 929 16719 179 29 9 chr1 45114620 45118109 -152077323 - L1VL4 LINE L1 -1271 4615 1052 1 929 1025 80 7 0 chr1 45118109 45118247 -152077185 - B1_Mus1 SINE Alu 0 148 10 1 929 5194 54 3 1 chr1 45118247 45118928 -152076504 - L1Md_F3 LINE L1 -266 6318 5637 1 929 3162 107 6 6 chr1 45118947 45119476 -152075956 - L1Md_F LINE L1 -5454 1270 740 1 929 1138 82 0 0 chr1 45119476 45119623 -152075809 + B1_Mm SINE Alu 1 147 0 1 929 2534 160 0 95 chr1 45119623 45119714 -152075718 - L1Md_F LINE L1 -5943 781 709 1 929 2782 18 3 0 chr1 45119715 45120058 -152075374 - L1Md_A LINE L1 -508 5375 5032 1 929 1852 5 0 0 chr1 45120044 45120257 -152075175 + L1Md_A LINE L1 5374 5586 -297 1 929 9093 1 0 0 chr1 45120257 45121253 -152074179 + L1Md_A LINE L1 5587 6582 0 1 929 1047 207 8 24 chr1 45121257 45121509 -152073923 - L1VL1 LINE L1 -6141 281 34 1 929 3658 129 0 7 chr1 45121849 45122512 -152072920 + Lx3A LINE L1 5292 5947 -1034 1 929 974 168 71 14 chr1 45122537 45122748 -152072684 - Lx9 LINE L1 -167 7477 7255 1 929 1171 245 210 22 chr1 45122768 45123416 -152072016 - Lx9 LINE L1 -589 7055 6286 1 929 2749 224 85 65 chr1 45123461 45124830 -152070602 - Lx9 LINE L1 -1553 6091 4664 1 929 239 382 8 15 chr1 45125135 45125268 -152070164 - Lx8 LINE L1 -236 7237 7106 1 929 953 163 0 6 chr1 45126965 45127144 -152068288 + CT-rich Low_complexity Low_complexity 1 178 0 1 929 5803 167 16 44 chr1 45127156 45128328 -152067104 - Lx2B LINE L1 -22 6978 5840 1 929 7002 168 16 164 chr1 45128319 45130200 -152065232 - L1_Mur1 LINE L1 -661 5225 3683 1 929 432 0 0 0 chr1 45130200 45130248 -152065184 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 929 7002 168 16 164 chr1 45130248 45130592 -152064840 - L1_Mur1 LINE L1 -2204 3682 3331 1 929 778 288 39 47 chr1 45130600 45130855 -152064577 + MTE2a LTR MaLR 127 379 0 1 929 498 324 69 23 chr1 45131118 45131336 -152064096 - RLTR16 LTR ERVK -254 251 24 1 929 288 254 124 21 chr1 45132120 45132313 -152063119 + Lx9 LINE L1 7395 7607 -37 1 929 1945 135 42 3 chr1 45132758 45133071 -152062361 - ORR1A2 LTR MaLR 0 327 3 1 929 247 304 0 0 chr1 45133968 45134047 -152061385 + L1MD LINE L1 2484 2562 -3584 1 929 5792 150 54 30 chr1 45134200 45135377 -152060055 + Lx2 LINE L1 5768 6973 -24 1 929 3272 181 26 84 chr1 45135379 45136137 -152059295 - RLTR13D6 LTR ERVK 0 902 189 1 929 32004 89 5 13 chr1 45136137 45142296 -152053136 - L1Md_F2 LINE L1 -30 6552 446 1 929 1348 147 0 5 chr1 45142301 45142513 -152052919 - RLTR13D6 LTR ERVK -691 211 1 1 929 207 162 0 0 chr1 45142541 45142578 -152052854 + A-rich Low_complexity Low_complexity 1 37 0 1 929 693 248 89 59 chr1 45142703 45143032 -152052400 + RLTR1 LTR ERV1 77 511 -113 1 929 1246 158 111 89 chr1 45143032 45143392 -152052040 + Lx2 LINE L1 6606 6973 -24 1 929 4546 171 21 64 chr1 45143394 45144336 -152051096 - RLTR13D6 LTR ERVK 0 902 1 1 929 303 252 121 7 chr1 45144373 45144513 -152050919 + L1MD LINE L1 3073 3228 -2918 1 929 958 244 121 84 chr1 45144549 45144930 -152050502 + RLTR1B LTR ERV1 1 395 -117 1 929 1241 167 108 89 chr1 45144930 45145291 -152050141 + Lx2 LINE L1 6606 6973 -24 1 929 4419 185 20 50 chr1 45145293 45146222 -152049210 - RLTR13D6 LTR ERVK 0 902 1 1 929 315 122 0 0 chr1 45146241 45146290 -152049142 + (A)n Simple_repeat Simple_repeat 1 49 0 1 929 1306 237 80 21 chr1 45146361 45146855 -152048577 + RLTR1 LTR ERV1 1 624 0 1 929 15351 253 30 14 chr1 45146855 45150885 -152044547 + MMERGLN-int LTR ERV1 1 4093 -3463 1 929 6796 54 1 0 chr1 45151021 45152185 -152043247 - L1Md_F3 LINE L1 -140 6444 5281 1 929 7753 59 2 0 chr1 45152185 45153232 -152042200 + L1Md_F3 LINE L1 4249 5297 -586 1 929 1441 215 62 23 chr1 45153262 45153674 -152041758 + RLTR1 LTR ERV1 126 624 0 1 929 7516 52 3 1 chr1 45153893 45155309 -152040123 - L1Md_F2 LINE L1 -2 6580 5164 1 929 3654 96 42 18 chr1 45155655 45156206 -152039226 + LTRIS2 LTR ERV1 1 564 0 1 929 2294 161 86 2 chr1 45156305 45156735 -152038697 + RMER4A LTR ERVK 1 466 0 1 929 664 145 51 39 chr1 45156772 45156920 -152038512 + RMER4A LTR ERVK 349 585 0 1 929 321 353 48 31 chr1 45157040 45157268 -152038164 + RMER5 LTR ERV1 267 498 -36 1 929 343 367 42 56 chr1 45157387 45157742 -152037690 + L1ME3A LINE L1 5817 6166 -7 1 929 264 213 0 0 chr1 45158220 45158281 -152037151 + (CAT)n Simple_repeat Simple_repeat 2 62 0 1 929 13132 139 20 17 chr1 45158292 45161813 -152033619 - Lx3B LINE L1 -6 6967 3434 1 929 35652 44 10 1 chr1 45162527 45168428 -152027004 - L1Md_F2 LINE L1 0 6582 643 1 929 208 264 0 0 chr1 45168466 45168519 -152026913 + T-rich Low_complexity Low_complexity 1 53 0 1 929 309 51 0 0 chr1 45168656 45168695 -152026737 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 929 329 271 16 32 chr1 45168703 45168850 -152026582 + MIRc SINE MIR 102 248 -20 1 929 842 45 18 0 chr1 45169157 45169269 -152026163 + B1_Mm SINE Alu 34 147 0 1 929 26 0 0 0 chr1 45169987 45170013 -152025419 + AT_rich Low_complexity Low_complexity 1 26 0 1 929 2285 188 82 16 chr1 45170145 45170633 -152024799 - RLTR28 LTR ERVL -4 520 1 1 929 1031 190 118 7 chr1 45172025 45172295 -152023137 - Lx9 LINE L1 -32 7612 7313 1 929 2015 171 99 8 chr1 45172369 45172771 -152022661 - MTC-int LTR MaLR -817 441 3 1 929 2452 186 2 2 chr1 45172771 45173192 -152022240 - MTC LTR MaLR 0 421 1 1 929 457 316 178 11 chr1 45173346 45173621 -152021811 + Lx8 LINE L1 7131 7451 -22 1 929 258 136 0 0 chr1 45174318 45174362 -152021070 + (TAA)n Simple_repeat Simple_repeat 1 44 0 1 929 379 314 62 31 chr1 45175325 45175453 -152019979 + RSINE1 SINE B4 3 134 -31 1 929 2298 226 69 50 chr1 45175892 45176456 -152018976 - RMER15 LTR ERVL 0 575 1 1 929 2068 234 34 20 chr1 45176732 45177320 -152018112 + L1VL4 LINE L1 194 789 -5513 1 929 12013 177 32 14 chr1 45177313 45180112 -152015320 + Lx2 LINE L1 1203 4235 -1651 1 929 400 71 0 0 chr1 45180112 45180168 -152015264 + L1_Mm LINE L1 4348 4403 -1480 2 929 2776 126 32 29 chr1 45180163 45180679 -152014753 + Lx2 LINE L1 5526 6047 -950 1 929 27530 142 19 10 chr1 45180675 45186459 -152008973 + L1_Mus3 LINE L1 222 6095 -543 2 929 3595 20 119 14 chr1 45186459 45186905 -152008527 - MT2_Mm LTR ERVL 0 493 1 2 929 6235 102 86 6 chr1 45186905 45187428 -152008004 + L1_Mus3 LINE L1 6096 6625 -13 2 929 5043 179 42 0 chr1 45187429 45188379 -152007053 + Lx2 LINE L1 6007 6996 -1 2 929 22 35 0 0 chr1 45188543 45188572 -152006860 + AT_rich Low_complexity Low_complexity 1 29 0 2 929 566 28 14 0 chr1 45188782 45188854 -152006578 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 929 2208 211 5 2 chr1 45190195 45190613 -152004819 - MTC LTR MaLR 0 421 3 2 929 1512 240 25 22 chr1 45191365 45191723 -152003709 - ORR1B2 LTR MaLR -8 359 1 2 929 2793 169 18 48 chr1 45191779 45191892 -152003540 - RLTR20A LTR ERVK 0 541 424 2 929 1611 4 0 0 chr1 45191892 45192144 -152003288 + (GGGAGA)n Simple_repeat Simple_repeat 1 252 0 2 929 2793 169 18 48 chr1 45192144 45192586 -152002846 - RLTR20A LTR ERVK -118 423 1 2 929 1790 171 139 0 chr1 45192808 45193154 -152002278 + ORR1B1 LTR MaLR 1 394 0 2 929 348 352 112 17 chr1 45193814 45194285 -152001147 + L1M4 LINE L1 3609 4124 -2022 2 929 641 297 15 67 chr1 45194310 45194505 -152000927 - B3 SINE B2 0 216 32 2 929 4263 83 0 2 chr1 45194506 45195167 -152000265 - L1_Mus2 LINE L1 -622 5944 5287 2 929 6886 50 123 2 chr1 45195161 45196506 -151998926 - L1Md_F2 LINE L1 -4 6578 5042 2 929 4171 101 2 2 chr1 45196506 45197091 -151998341 + L1_Mus2 LINE L1 5981 6565 -1 2 929 675 0 0 0 chr1 45197152 45197227 -151998205 + (GAA)n Simple_repeat Simple_repeat 2 76 0 2 929 217 154 0 25 chr1 45197227 45197267 -151998165 - B3A SINE B2 -158 40 2 2 929 278 240 36 55 chr1 45197270 45197380 -151998052 + L1M4 LINE L1 4121 4228 -1918 2 929 800 311 43 58 chr1 45197413 45197738 -151997694 + Lx8 LINE L1 7004 7323 -150 2 929 3226 244 43 29 chr1 45198087 45198373 -151997059 - Lx6 LINE L1 0 7460 7184 2 929 5500 48 0 0 chr1 45198373 45199044 -151996388 + L1Md_T LINE L1 5910 6580 -2 2 929 3226 244 43 29 chr1 45199044 45199543 -151995889 - Lx6 LINE L1 -277 7183 6664 2 929 4342 134 6 4 chr1 45199547 45200236 -151995196 + L1_Mus4 LINE L1 5936 6625 -11 2 929 769 229 62 128 chr1 45200245 45200535 -151994897 - RLTR9C LTR ERVK 0 393 123 2 929 270 0 0 0 chr1 45200535 45200565 -151994867 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 929 555 16 0 0 chr1 45200565 45200628 -151994804 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 929 4601 231 30 11 chr1 45200630 45201903 -151993529 - Lx6 LINE L1 -794 6666 5376 2 929 281 47 0 23 chr1 45202323 45202367 -151993065 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 929 24 67 0 0 chr1 45202378 45202423 -151993009 + AT_rich Low_complexity Low_complexity 1 45 0 2 929 1458 126 0 0 chr1 45202427 45202650 -151992782 - Lx3B LINE L1 -625 6348 6126 2 929 450 194 32 0 chr1 45202685 45202778 -151992654 + Lx3B LINE L1 6877 6972 -1 2 929 252 122 0 0 chr1 45202784 45202825 -151992607 + (ATG)n Simple_repeat Simple_repeat 2 42 0 2 929 361 162 0 0 chr1 45203302 45203370 -151992062 + L1_Mur2 LINE L1 4191 4258 -1619 2 929 949 296 50 0 chr1 45204188 45204468 -151990964 - Lx8 LINE L1 -797 6676 6383 2 929 637 270 62 36 chr1 45204494 45204677 -151990755 + ORR1E LTR MaLR 1 188 -171 2 929 867 125 0 0 chr1 45204677 45204845 -151990587 + (TC)n Simple_repeat Simple_repeat 1 168 0 2 929 637 269 45 432 chr1 45204845 45204985 -151990447 + ORR1E LTR MaLR 189 370 0 2 929 473 322 13 7 chr1 45204985 45205135 -151990297 - Lx8 LINE L1 -1107 6366 6216 2 929 21 36 0 0 chr1 45205135 45205163 -151990269 + AT_rich Low_complexity Low_complexity 1 28 0 2 929 317 358 18 0 chr1 45205453 45205562 -151989870 + MIR3 SINE MIR 83 193 -15 2 929 21 36 0 0 chr1 45205591 45205619 -151989813 + AT_rich Low_complexity Low_complexity 1 28 0 2 929 23 0 0 0 chr1 45206596 45206619 -151988813 + AT_rich Low_complexity Low_complexity 1 23 0 2 929 24 0 0 0 chr1 45207338 45207362 -151988070 + AT_rich Low_complexity Low_complexity 1 24 0 2 929 216 398 8 50 chr1 45207485 45207604 -151987828 - L2b LINE L2 -20 3355 3242 2 929 385 333 201 14 chr1 45208045 45208288 -151987144 - MLT1F2 LTR MaLR -63 590 298 2 929 709 51 0 87 chr1 45208314 45208509 -151986923 + (TCC)n Simple_repeat Simple_repeat 3 180 0 2 929 629 93 242 17 chr1 45208799 45208907 -151986525 + B1_Mus1 SINE Alu 1 137 -11 2 929 213 65 0 0 chr1 45208907 45208938 -151986494 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 929 629 93 242 17 chr1 45208938 45208949 -151986483 + B1_Mus1 SINE Alu 138 147 -1 2 929 546 289 22 137 chr1 45209016 45209140 -151986292 + MLT1B LTR MaLR 5 118 -272 2 929 276 30 0 0 chr1 45209140 45209173 -151986259 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 929 537 16 0 0 chr1 45209173 45209234 -151986198 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 929 546 289 22 137 chr1 45209234 45209385 -151986047 + MLT1B LTR MaLR 119 248 -142 2 929 847 177 33 33 chr1 45209391 45209571 -151985861 + RMER6C LTR ERVK 1 177 -579 2 929 1376 194 72 42 chr1 45209591 45209924 -151985508 + RMER6C LTR ERVK 348 690 0 2 929 203 356 43 17 chr1 45210154 45210271 -151985161 - L2a LINE L2 -1 3425 3306 2 929 872 148 6 17 chr1 45210295 45210467 -151984965 - Lx2 LINE L1 -1 6996 6827 2 929 462 410 68 20 chr1 45210467 45210716 -151984716 - MLT2B3 LTR ERVL -147 407 147 2 929 3988 233 70 124 chr1 45210753 45211370 -151984062 + L1_Mur2 LINE L1 3947 4561 -1316 2 929 427 151 11 23 chr1 45211370 45211458 -151983974 + RMER4B LTR ERVK 17 103 -482 2 929 3988 233 70 124 chr1 45211458 45212448 -151982984 + L1_Mur2 LINE L1 4562 5549 -328 2 929 3979 279 40 34 chr1 45212443 45213726 -151981706 + Lx6 LINE L1 5914 7205 -255 2 929 3740 45 4 2 chr1 45213732 45214195 -151981237 - L1Md_F2 LINE L1 -6 6576 6113 2 929 25 0 0 0 chr1 45214386 45214411 -151981021 + AT_rich Low_complexity Low_complexity 1 25 0 2 929 845 303 32 41 chr1 45214583 45214831 -151980601 + B4A SINE B4 2 246 -46 2 929 1229 65 0 0 chr1 45214831 45214984 -151980448 + L1Md_F2 LINE L1 6048 6200 -382 2 929 1659 76 88 42 chr1 45214985 45215246 -151980186 + L1Md_F2 LINE L1 6301 6573 -9 2 929 540 106 0 0 chr1 45215342 45215427 -151980005 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 929 2660 273 119 30 chr1 45215553 45216588 -151978844 + Lx9 LINE L1 6466 7592 -52 2 929 415 227 44 50 chr1 45217448 45217629 -151977803 - Lx9 LINE L1 -1 7643 7464 2 929 236 257 14 0 chr1 45218074 45218144 -151977288 - L1MEe LINE L1 -3906 948 878 2 116 19418 82 1 24 chr1 45218846 45222263 -151973169 + L1Md_F2 LINE L1 538 3872 -2011 2 930 36260 14 2 7 chr1 45222268 45228096 -151967336 + L1Md_A LINE L1 1 5586 -297 2 930 8712 20 0 0 chr1 45228096 45229092 -151966340 + L1Md_A LINE L1 5587 6582 0 2 930 12629 69 0 1 chr1 45229092 45230822 -151964610 + L1Md_F2 LINE L1 3858 5586 -297 2 930 7961 50 2 4 chr1 45230822 45231820 -151963612 + L1Md_F2 LINE L1 5587 6582 0 2 930 15056 105 42 8 chr1 45232046 45234619 -151960813 + L1_Mur1 LINE L1 809 3479 -2407 2 930 849 20 0 0 chr1 45234619 45234718 -151960714 + (GAA)n Simple_repeat Simple_repeat 2 100 0 2 930 15056 100 18 8 chr1 45234718 45234921 -151960511 + L1_Mur1 LINE L1 3480 3676 -2210 2 930 691 253 221 3 chr1 45238173 45238554 -151956878 + L1_Mur3 LINE L1 5086 5549 -331 2 930 22 35 0 0 chr1 45238557 45238586 -151956846 + AT_rich Low_complexity Low_complexity 1 29 0 2 930 1332 321 83 25 chr1 45238630 45238902 -151956530 + Lx8 LINE L1 6573 6847 -626 2 930 303 28 0 0 chr1 45238902 45238938 -151956494 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 930 1332 321 83 25 chr1 45238938 45239512 -151955920 + Lx8 LINE L1 6848 7467 -6 2 930 1823 199 77 9 chr1 45240320 45240892 -151954540 - RLTR18 LTR ERVK 0 616 6 2 930 230 270 33 22 chr1 45240951 45241042 -151954390 + CT-rich Low_complexity Low_complexity 4 95 0 2 930 241 350 10 10 chr1 45241042 45241140 -151954292 - PB1D10 SINE Alu 0 117 20 2 930 29498 98 13 10 chr1 45243305 45248673 -151946759 + L1Md_F2 LINE L1 203 5585 -298 2 930 7244 86 1 7 chr1 45248674 45249662 -151945770 + L1Md_F2 LINE L1 5587 6568 -14 2 930 619 193 7 7 chr1 45249785 45249884 -151945548 + A-rich Low_complexity Low_complexity 3 101 0 2 930 1565 0 0 11 chr1 45249884 45250066 -151945366 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 930 619 193 7 7 chr1 45250066 45250112 -151945320 + A-rich Low_complexity Low_complexity 102 147 0 2 930 6477 137 34 11 chr1 45250938 45252977 -151942455 - Lx LINE L1 0 6654 4571 2 930 188 189 35 70 chr1 45253042 45253099 -151942333 + L2 LINE L2 2797 2851 -568 2 930 635 329 57 18 chr1 45253102 45253381 -151942051 + B4A SINE B4 1 290 -2 2 930 597 14 0 0 chr1 45253415 45253485 -151941947 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 930 477 0 0 0 chr1 45253668 45253721 -151941711 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2 930 495 0 0 0 chr1 45253939 45253994 -151941438 + (TTCTC)n Simple_repeat Simple_repeat 1 55 0 2 930 645 88 26 17 chr1 45253997 45254112 -151941320 + (TTTC)n Simple_repeat Simple_repeat 3 118 0 2 930 22 0 0 0 chr1 45254436 45254458 -151940974 + AT_rich Low_complexity Low_complexity 1 22 0 2 930 544 326 15 64 chr1 45254473 45254676 -151940756 - B3A SINE B2 -1 197 5 2 930 39303 8 0 1 chr1 45255859 45262858 -151932574 - L1Md_A LINE L1 0 6582 1 2 930 742 329 71 34 chr1 45263711 45264064 -151931368 - MTEa LTR MaLR -11 368 3 2 930 586 297 42 50 chr1 45264206 45264553 -151930879 + Lx8 LINE L1 5430 5763 -84 2 930 2686 195 54 51 chr1 45264553 45265239 -151930193 - RMER6C LTR ERVK 0 690 3 2 930 586 294 26 63 chr1 45265239 45265314 -151930118 + Lx8 LINE L1 5764 5836 -11 2 930 673 74 28 0 chr1 45265381 45265489 -151929943 + (TCTCCC)n Simple_repeat Simple_repeat 6 116 0 2 930 240 35 0 0 chr1 45265534 45265563 -151929869 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 930 242 377 72 7 chr1 45265734 45265873 -151929559 + RMER12 LTR ERVK 703 850 -472 2 930 788 325 66 24 chr1 45265877 45266424 -151929008 + Lx8 LINE L1 6177 6756 -940 2 930 627 345 23 0 chr1 45266471 45266735 -151928697 + Lx8 LINE L1 6900 7169 -304 2 930 1805 207 42 3 chr1 45266739 45267092 -151928340 - ORR1D1 LTR MaLR 0 374 8 2 930 4026 208 12 157 chr1 45267501 45267659 -151927773 + Lx4B LINE L1 4580 4742 -1138 2 930 1931 140 22 3 chr1 45267659 45267982 -151927450 - ORR1A4 LTR MaLR 0 329 1 2 930 4671 220 38 61 chr1 45267982 45270408 -151925024 + Lx4B LINE L1 4743 6986 -11 2 930 6863 232 42 29 chr1 45270392 45272272 -151923160 + Lx7 LINE L1 5436 7353 -343 2 930 351 65 0 0 chr1 45272272 45272318 -151923114 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2 930 6863 231 43 31 chr1 45272318 45272477 -151922955 + Lx7 LINE L1 7354 7502 -194 2 930 534 43 0 0 chr1 45273712 45273781 -151921651 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 930 26 82 0 0 chr1 45274407 45274468 -151920964 + AT_rich Low_complexity Low_complexity 1 61 0 2 930 729 275 135 20 chr1 45274719 45274964 -151920468 - MTEa LTR MaLR -3 376 104 3 930 2944 113 11 38 chr1 45275169 45275646 -151919786 - Lx3A LINE L1 -14 6967 6504 3 930 1758 67 4 0 chr1 45275655 45275880 -151919552 - L1_Mus1 LINE L1 0 6567 6342 3 930 5475 106 30 5 chr1 45275881 45276738 -151918694 - Lx3_Mus LINE L1 -488 6521 5643 3 930 210 37 0 0 chr1 45276738 45276765 -151918667 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 930 205 100 0 39 chr1 45276754 45276806 -151918626 + (TTTTG)n Simple_repeat Simple_repeat 5 54 0 3 930 2469 119 133 0 chr1 45276806 45277241 -151918191 - Lx3_Mus LINE L1 -1147 4739 4247 3 930 368 359 52 30 chr1 45277399 45277534 -151917898 + RSINE1 SINE B4 6 143 -22 3 930 41 48 0 0 chr1 45278478 45278540 -151916892 + AT_rich Low_complexity Low_complexity 1 62 0 3 930 3775 219 22 22 chr1 45279808 45280642 -151914790 - Lx2B LINE L1 -6 6994 6161 3 930 1591 211 12 21 chr1 45280643 45280968 -151914464 + ORR1D1-int LTR MaLR 839 1160 -210 3 930 986 202 0 39 chr1 45280968 45281174 -151914258 + Lx2B LINE L1 6337 6534 -466 3 930 273 109 0 0 chr1 45281282 45281328 -151914104 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 930 732 192 109 11 chr1 45281336 45281520 -151913912 + ORR1D1-int LTR MaLR 1169 1370 0 3 930 665 298 90 71 chr1 45281522 45281887 -151913545 + ORR1D1 LTR MaLR 3 374 0 3 930 479 274 0 17 chr1 45281887 45282002 -151913430 - MTE2b LTR MaLR -265 114 2 3 930 6999 133 20 12 chr1 45282451 45283616 -151911816 + Lx2A1 LINE L1 5829 7002 -6 3 930 201 47 22 44 chr1 45283654 45283699 -151911733 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 3 930 13379 145 25 34 chr1 45283783 45286789 -151908643 + L1VL2 LINE L1 1 2875 -740 3 930 373 0 58 0 chr1 45286789 45286841 -151908591 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 930 13379 113 17 10 chr1 45286841 45287103 -151908329 + L1VL2 LINE L1 2876 3128 -487 3 930 1961 157 18 3 chr1 45287106 45287444 -151907988 + RMER17C-int LTR ERVK 2895 3237 -1 3 930 815 205 38 32 chr1 45287450 45287740 -151907692 + RMER17B LTR ERVK 16 439 -519 3 930 37732 43 0 3 chr1 45287806 45294045 -151901387 - L1Md_T LINE L1 0 6585 265 3 930 4085 166 13 1 chr1 45294079 45294787 -151900645 + Lx2 LINE L1 5925 6640 -357 3 930 1234 187 9 0 chr1 45294792 45295011 -151900421 + Lx2 LINE L1 6777 6997 0 3 930 2424 154 2 52 chr1 45295021 45295465 -151899967 + L1_Mm LINE L1 5357 5778 -105 3 930 1623 134 56 10 chr1 45295465 45295823 -151899609 + IAPLTR2a LTR ERVK 1 393 -82 3 930 291 265 0 0 chr1 45295824 45295892 -151899540 + CT-rich Low_complexity Low_complexity 3 70 0 3 930 752 114 54 56 chr1 45295898 45296111 -151899321 + IAPLTR1_Mm LTR ERVK 211 459 -16 3 930 6002 119 60 13 chr1 45296111 45297063 -151898369 + Lx LINE L1 5657 6653 -1 3 930 650 231 157 17 chr1 45297077 45297364 -151898068 - Lx9 LINE L1 -5 7639 7313 3 930 2254 34 0 0 chr1 45297405 45297673 -151897759 + L1Md_A LINE L1 6315 6582 0 3 930 609 79 0 0 chr1 45297682 45297771 -151897661 + L1_Mus2 LINE L1 6477 6565 -1 3 930 212 179 0 0 chr1 45297777 45297816 -151897616 + A-rich Low_complexity Low_complexity 1 39 0 3 930 1027 101 0 39 chr1 45297953 45298107 -151897325 - B1_Mus1 SINE Alu 0 148 1 3 930 390 350 25 25 chr1 45298153 45298314 -151897118 - RSINE1 SINE B4 -2 163 3 3 930 1635 197 19 100 chr1 45298480 45298891 -151896541 - ORR1C1 LTR MaLR 0 378 1 3 930 219 69 0 0 chr1 45299606 45299635 -151895797 + (T)n Simple_repeat Simple_repeat 1 29 0 3 930 25 0 0 0 chr1 45299673 45299698 -151895734 + AT_rich Low_complexity Low_complexity 1 25 0 3 930 25 31 0 0 chr1 45300120 45300152 -151895280 + AT_rich Low_complexity Low_complexity 1 32 0 3 930 2581 66 0 6 chr1 45300165 45300501 -151894931 - L1Md_F2 LINE L1 -13 6569 6236 3 930 3912 191 12 37 chr1 45301590 45302395 -151893037 - RMER16-int LTR ERVK -3678 1728 944 3 930 1617 108 20 20 chr1 45302396 45302641 -151892791 + RLTR13D5 LTR ERVK 2 246 -777 3 930 317 186 28 14 chr1 45302954 45303025 -151892407 + RLTR19-int LTR ERVK 896 967 -5170 3 930 310 167 15 29 chr1 45303057 45303125 -151892307 + RLTR19-int LTR ERVK 1541 1607 -3915 3 930 458 230 7 22 chr1 45303469 45303607 -151891825 + RLTR19-int LTR ERVK 1869 2004 -3518 3 930 35249 72 7 4 chr1 45303660 45309915 -151885517 - L1Md_F2 LINE L1 0 7003 278 3 930 340 262 46 9 chr1 45309972 45310080 -151885352 + RLTR19-int LTR ERVK 2337 2448 -3689 3 930 680 177 7 7 chr1 45310166 45310308 -151885124 - MERVL_2A-int LTR ERVL 0 5761 5620 3 930 1086 153 43 0 chr1 45310309 45310518 -151884914 - MERVL_2A-int LTR ERVL -73 5688 5471 3 930 3971 171 108 20 chr1 45310536 45311352 -151884080 - Lx2B LINE L1 0 7000 6113 3 930 3119 199 19 2 chr1 45311352 45311930 -151883502 - MERVL_2A-int LTR ERVL -289 5472 4885 3 930 2938 182 74 11 chr1 45311908 45312772 -151882660 - MERVL_2A-int LTR ERVL -2244 3517 2600 3 930 1391 220 35 35 chr1 45312829 45313142 -151882290 - ORR1B2 LTR MaLR -8 359 47 3 930 4478 240 68 47 chr1 45313142 45314591 -151880841 - ORR1B2-int LTR MaLR 0 1509 30 3 930 1032 254 64 115 chr1 45314602 45315097 -151880335 - MT2B LTR ERVL -2 599 1 3 930 538 248 82 115 chr1 45315103 45315468 -151879964 + RLTR19-int LTR ERVK 2534 2886 -3251 3 930 22095 176 31 14 chr1 45315596 45321701 -151873731 + Lx2 LINE L1 782 6989 -8 3 930 222 216 0 0 chr1 45321980 45322054 -151873378 + CT-rich Low_complexity Low_complexity 1 74 0 3 930 4377 222 19 5 chr1 45322586 45323452 -151871980 + Lx5 LINE L1 6172 7049 -1 3 930 1254 321 69 17 chr1 45323499 45324034 -151871398 - Lx8 LINE L1 -455 7018 6456 3 930 1604 291 110 19 chr1 45324030 45324178 -151871254 + L1PB4 LINE L1 5055 5203 -677 3 930 414 0 0 0 chr1 45324178 45324224 -151871208 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 930 1604 274 94 24 chr1 45324224 45324846 -151870586 + L1PB4 LINE L1 5204 5928 -228 3 930 275 104 0 20 chr1 45325276 45325325 -151870107 + L1_Mur1 LINE L1 1893 1940 -3946 3 930 974 105 51 39 chr1 45325321 45325390 -151870042 + L1_Mur1 LINE L1 2640 2709 -3177 3 930 4120 55 60 9 chr1 45325390 45325923 -151869509 + LTRIS2 LTR ERV1 5 564 0 3 930 974 105 51 39 chr1 45325923 45326031 -151869401 + L1_Mur1 LINE L1 2710 2819 -3067 3 930 522 343 164 60 chr1 45326159 45326708 -151868724 + MLT1J-int LTR MaLR 670 1275 -112 3 930 2374 164 22 37 chr1 45328077 45328540 -151866892 + L1_Mm LINE L1 4599 5054 -829 3 930 12797 187 105 28 chr1 45328539 45329145 -151866287 - L1VL4 LINE L1 -1302 4575 3949 3 930 360 0 0 0 chr1 45329145 45329185 -151866247 + (TATG)n Simple_repeat Simple_repeat 1 40 0 3 930 12797 187 105 28 chr1 45329185 45330480 -151864952 - L1VL4 LINE L1 -1929 3948 2707 3 930 333 0 0 0 chr1 45330480 45330517 -151864915 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 930 12797 190 67 28 chr1 45330517 45332562 -151862870 - L1VL4 LINE L1 -3171 2706 406 3 930 286 232 0 0 chr1 45335192 45335261 -151860171 + Lx7 LINE L1 7239 7307 -389 3 930 407 262 181 31 chr1 45335477 45335831 -151859601 + L1MA8 LINE L1 5879 6285 -6 3 930 28 0 0 0 chr1 45335933 45335961 -151859471 + AT_rich Low_complexity Low_complexity 1 28 0 3 930 212 360 0 0 chr1 45336077 45336127 -151859305 + ID4_ SINE ID 28 77 -6 3 930 31 26 0 0 chr1 45336551 45336589 -151858843 + AT_rich Low_complexity Low_complexity 1 38 0 3 930 4985 109 30 13 chr1 45336590 45337364 -151858068 - Lx3A LINE L1 -5 6976 6190 3 930 288 136 0 0 chr1 45337364 45337408 -151858024 + B2_Mm2 SINE B2 81 124 -71 3 930 243 0 0 0 chr1 45337425 45337452 -151857980 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 930 808 244 109 36 chr1 45338333 45338716 -151856716 + L1MA6 LINE L1 5612 6019 -281 3 930 313 315 44 135 chr1 45339550 45339957 -151855475 - Zaphod DNA Tip100 -6 4025 3656 3 930 23 33 0 0 chr1 45339982 45340012 -151855420 + AT_rich Low_complexity Low_complexity 1 30 0 3 930 3292 242 16 50 chr1 45340029 45340621 -151854811 - Lx6 LINE L1 -2 7458 6884 3 930 303 28 0 0 chr1 45340621 45340657 -151854775 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 930 3292 242 16 50 chr1 45340657 45340850 -151854582 - Lx6 LINE L1 -577 6883 6700 3 930 364 298 28 28 chr1 45340852 45340959 -151854473 - RLTR18 LTR ERVK 0 616 510 3 930 247 311 45 36 chr1 45341241 45341351 -151854081 - RLTR18 LTR ERVK -314 198 88 3 930 748 189 0 0 chr1 45341403 45341530 -151853902 - Lx6 LINE L1 -758 6702 6576 3 930 30 45 0 0 chr1 45341530 45341574 -151853858 + AT_rich Low_complexity Low_complexity 1 44 0 3 930 628 266 67 11 chr1 45341657 45341836 -151853596 + Lx7 LINE L1 7068 7256 -440 3 930 388 340 102 39 chr1 45341939 45342273 -151853159 - Zaphod DNA Tip100 -3432 599 245 3 930 1418 137 7 81 chr1 45342401 45342710 -151852722 - Lx3A LINE L1 -6 6975 6690 3 930 2143 122 3 3 chr1 45342710 45343032 -151852400 + Lx3_Mus LINE L1 6409 6730 -279 3 930 282 29 0 0 chr1 45343146 45343181 -151852251 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 930 613 310 53 70 chr1 45343184 45343670 -151851762 - Lx9 LINE L1 -190 7454 6977 3 930 422 298 0 0 chr1 45343693 45343787 -151851645 + PB1D10 SINE Alu 17 110 -7 3 930 28 0 0 0 chr1 45344067 45344095 -151851337 + AT_rich Low_complexity Low_complexity 1 28 0 3 930 416 206 146 66 chr1 45344315 45344466 -151850966 - RMER15 LTR ERVL -54 521 359 3 930 230 303 115 13 chr1 45344684 45344841 -151850591 - L1M4 LINE L1 -753 5426 5254 3 930 902 246 15 5 chr1 45344864 45345060 -151850372 + B3 SINE B2 3 200 -16 3 930 354 315 44 48 chr1 45345086 45345313 -151850119 - L1M4 LINE L1 -915 5231 5006 3 930 316 308 18 18 chr1 45345775 45345884 -151849548 + GA-rich Low_complexity Low_complexity 3 111 0 3 930 241 302 80 58 chr1 45348027 45348164 -151847268 + MER2 DNA MER2_type 87 226 -119 3 930 512 324 77 62 chr1 45348247 45348507 -151846925 + B4A SINE B4 1 264 -28 3 930 21 0 0 0 chr1 45348625 45348646 -151846786 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 1658 308 29 21 chr1 45348747 45349284 -151846148 + Lx5 LINE L1 6502 7056 -2 3 930 517 286 8 0 chr1 45349313 45349446 -151845986 + Lx6 LINE L1 7184 7317 -143 3 930 204 227 0 22 chr1 45349700 45349745 -151845687 + GA-rich Low_complexity Low_complexity 1 44 0 3 930 1932 317 112 15 chr1 45349783 45350532 -151844900 + Tigger7 DNA MER2_type 3 824 -1667 3 930 509 332 42 14 chr1 45350557 45350774 -151844658 + Tigger7 DNA MER2_type 879 1101 -1390 3 116 427 257 174 5 chr1 45350779 45350963 -151844469 + Tigger7 DNA MER2_type 2262 2476 -15 3 931 230 128 45 34 chr1 45351259 45351348 -151844084 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 3 931 28 0 0 0 chr1 45351365 45351393 -151844039 + AT_rich Low_complexity Low_complexity 1 28 0 3 931 1144 63 0 0 chr1 45352138 45352280 -151843152 + B1_Mus2 SINE Alu 1 142 -5 3 931 615 27 0 0 chr1 45352282 45352355 -151843077 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 931 180 0 0 0 chr1 45353787 45353807 -151841625 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 931 307 280 151 92 chr1 45353906 45353990 -151841442 + MIR SINE MIR 8 85 -177 3 931 403 0 29 43 chr1 45353990 45354060 -151841372 + (TTG)n Simple_repeat Simple_repeat 1 69 0 3 931 1042 83 0 0 chr1 45354060 45354193 -151841239 - B1_Mm SINE Alu -13 134 2 3 931 307 280 151 92 chr1 45354193 45354292 -151841140 + MIR SINE MIR 86 202 -60 3 931 216 169 56 0 chr1 45354292 45354363 -151841069 + (TATATG)n Simple_repeat Simple_repeat 5 79 0 3 931 358 308 60 70 chr1 45354506 45354705 -151840727 + B3 SINE B2 1 197 -19 3 931 1167 187 101 40 chr1 45354725 45355021 -151840411 + RLTR46 LTR ERVK 1 314 -6 4 931 218 262 0 15 chr1 45355374 45355440 -151839992 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 931 379 235 76 81 chr1 45358718 45358903 -151836529 - Lx9 LINE L1 -1598 6046 5863 4 931 279 122 0 0 chr1 45359060 45359109 -151836323 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 931 4207 205 76 5 chr1 45359353 45360194 -151835238 + Lx9 LINE L1 6620 7513 -131 4 931 434 18 18 0 chr1 45360194 45360249 -151835183 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 4 931 4207 205 76 5 chr1 45360249 45360362 -151835070 + Lx9 LINE L1 7514 7641 -3 4 931 206 197 0 32 chr1 45360635 45360698 -151834734 + A-rich Low_complexity Low_complexity 2 62 0 4 931 846 180 169 0 chr1 45360741 45360930 -151834502 + URR1A DNA MER1_type 2 222 -4 4 931 255 192 26 40 chr1 45361072 45361148 -151834284 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 4 931 4319 80 19 2 chr1 45362280 45362866 -151832566 - L1_Mus2 LINE L1 0 6566 5971 4 931 2937 43 5 0 chr1 45362949 45363319 -151832113 - L1Md_F3 LINE L1 -15 6569 6198 4 931 8126 53 0 0 chr1 45363319 45364325 -151831107 + L1_Mm LINE L1 4811 5816 -67 4 931 333 327 75 57 chr1 45364325 45364484 -151830948 + RSINE1 SINE B4 2 163 -2 4 931 890 127 28 0 chr1 45365185 45365327 -151830105 - B1_Mus1 SINE Alu -1 147 2 4 931 27 0 0 0 chr1 45365387 45365414 -151830018 + AT_rich Low_complexity Low_complexity 1 27 0 4 931 233 336 0 26 chr1 45365811 45365924 -151829508 + GA-rich Low_complexity Low_complexity 2 111 0 4 931 23 0 0 0 chr1 45367240 45367263 -151828169 + AT_rich Low_complexity Low_complexity 1 23 0 4 931 315 255 92 78 chr1 45369812 45369965 -151825467 - HAL1-3A_ME LINE L1 -411 2447 2293 4 931 219 103 0 0 chr1 45370262 45370301 -151825131 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 931 696 56 0 0 chr1 45370302 45370391 -151825041 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 4 931 570 29 0 0 chr1 45371053 45371121 -151824311 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 931 192 40 0 0 chr1 45371148 45371173 -151824259 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 931 296 267 38 98 chr1 45371309 45371442 -151823990 + PB1 SINE Alu 1 125 -2 4 931 276 304 0 12 chr1 45371455 45371535 -151823897 + ID4_ SINE ID 5 83 0 4 931 22 35 0 0 chr1 45372204 45372233 -151823199 + AT_rich Low_complexity Low_complexity 1 29 0 4 931 223 262 32 16 chr1 45374281 45374343 -151821089 + PB1D10 SINE Alu 20 82 -35 4 931 25 31 0 0 chr1 45374545 45374577 -151820855 + AT_rich Low_complexity Low_complexity 1 32 0 4 931 252 292 0 0 chr1 45374865 45374937 -151820495 + B3A SINE B2 4 75 -123 4 931 448 292 87 47 chr1 45375590 45375888 -151819544 + L1MA6 LINE L1 5962 6271 -29 4 931 75 39 0 0 chr1 45376268 45376371 -151819061 + AT_rich Low_complexity Low_complexity 1 103 0 4 931 551 40 14 0 chr1 45376934 45377008 -151818424 + (GTTTG)n Simple_repeat Simple_repeat 1 75 0 4 931 194 0 39 0 chr1 45380114 45380140 -151815292 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 931 24 0 0 0 chr1 45384017 45384041 -151811391 + AT_rich Low_complexity Low_complexity 1 24 0 4 931 315 299 10 10 chr1 45384215 45384313 -151811119 + PB1D10 SINE Alu 14 111 -6 4 931 1066 126 11 0 chr1 45385067 45385249 -151810183 + L1_Mus3 LINE L1 6454 6637 -1 4 931 304 0 0 116 chr1 45386328 45386397 -151809035 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 4 931 362 17 15 108 chr1 45386397 45386462 -151808970 - B1_Mm SINE Alu 0 147 89 4 931 304 0 0 116 chr1 45386465 45386534 -151808898 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 4 931 780 29 9 9 chr1 45386534 45386640 -151808792 - B1_Mm SINE Alu 0 147 42 4 931 444 321 0 0 chr1 45386642 45386804 -151808628 + C-rich Low_complexity Low_complexity 4 165 0 4 931 219 69 0 0 chr1 45387053 45387082 -151808350 + (TTATA)n Simple_repeat Simple_repeat 2 30 0 4 931 182 143 37 49 chr1 45387606 45387687 -151807745 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 931 577 257 7 28 chr1 45389136 45389150 -151806282 - B1F SINE Alu 0 149 138 4 931 219 36 0 0 chr1 45389150 45389178 -151806254 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 931 577 257 7 28 chr1 45389178 45389307 -151806125 - B1F SINE Alu -12 137 9 4 931 291 261 54 0 chr1 45389576 45389668 -151805764 - BC1_Mm scRNA scRNA -48 104 8 4 931 2970 70 3 0 chr1 45392648 45393031 -151802401 + L1_Mus1 LINE L1 6184 6567 0 4 931 558 266 125 21 chr1 45393120 45393312 -151802120 + ID_B1 SINE B4 12 223 -1 4 931 1755 41 0 5 chr1 45394385 45394604 -151800828 + L1Md_T LINE L1 6365 6582 0 4 931 498 96 0 0 chr1 45396461 45396534 -151798898 + (TCC)n Simple_repeat Simple_repeat 3 75 0 4 931 183 42 0 0 chr1 45397272 45397296 -151798136 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 931 485 329 0 30 chr1 45399171 45399337 -151796095 - RSINE1 SINE B4 -1 164 4 4 931 247 349 77 50 chr1 45399754 45399935 -151795497 - MER106A DNA MER1_type -16 220 35 4 931 41 82 0 0 chr1 45400579 45400676 -151794756 + AT_rich Low_complexity Low_complexity 1 97 0 4 931 24 32 0 0 chr1 45401179 45401210 -151794222 + AT_rich Low_complexity Low_complexity 1 31 0 4 931 378 0 0 0 chr1 45402067 45402109 -151793323 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 931 186 43 0 0 chr1 45403231 45403254 -151792178 + (A)n Simple_repeat Simple_repeat 1 23 0 4 931 26 98 0 0 chr1 45403365 45403447 -151791985 + AT_rich Low_complexity Low_complexity 1 82 0 4 931 31 88 0 0 chr1 45403507 45403587 -151791845 + AT_rich Low_complexity Low_complexity 1 80 0 4 931 244 254 84 0 chr1 45407462 45407533 -151787899 + ID4_ SINE ID 4 80 -3 4 931 25 0 0 0 chr1 45407705 45407730 -151787702 + AT_rich Low_complexity Low_complexity 1 25 0 4 931 269 318 156 39 chr1 45408235 45408415 -151787017 - MLT1E2 LTR MaLR -299 328 128 4 931 679 291 64 45 chr1 45408927 45409277 -151786155 - MTE2b LTR MaLR -5 374 11 4 931 514 328 34 5 chr1 45409449 45409654 -151785778 - L2 LINE L2 -688 2731 2521 4 931 409 295 0 21 chr1 45409659 45409756 -151785676 + PB1D10 SINE Alu 14 108 -9 4 931 533 332 15 10 chr1 45410130 45410334 -151785098 + RMER15 LTR ERVL 299 503 -72 4 931 4930 104 22 6 chr1 45410344 45411071 -151784361 - Lx LINE L1 -25 6629 5891 4 931 23 0 0 0 chr1 45411379 45411402 -151784030 + AT_rich Low_complexity Low_complexity 1 23 0 4 931 485 259 153 21 chr1 45411561 45411750 -151783682 + RMER15-int LTR ERVL 464 677 -4322 4 931 1649 309 72 9 chr1 45411800 45412449 -151782983 + RMER15-int LTR ERVL 747 1436 -3563 4 931 702 109 16 25 chr1 45412453 45412575 -151782857 + URR1B DNA MER1_type 105 225 0 4 931 224 291 62 12 chr1 45413315 45413395 -151782037 + B1_Mur3 SINE Alu 47 130 -19 4 931 5143 145 27 9 chr1 45413623 45414526 -151780906 - Lx2 LINE L1 -3 6994 6076 4 931 1954 142 36 22 chr1 45414528 45414793 -151780639 - Lx2 LINE L1 -967 5687 5402 4 931 2345 107 106 3 chr1 45414793 45415169 -151780263 - RLTR9B2 LTR ERVK -3 417 3 4 931 1954 160 45 35 chr1 45415169 45415290 -151780142 - Lx2 LINE L1 -476 5401 5289 4 931 7538 113 16 12 chr1 45415285 45416439 -151778993 - Lx3A LINE L1 -40 6941 5783 4 931 1966 143 45 50 chr1 45416440 45416822 -151778610 - Lx LINE L1 0 6654 6275 4 931 485 101 0 0 chr1 45416839 45416908 -151778524 - RLTR13C2 LTR ERVK -739 69 1 4 931 1445 157 64 0 chr1 45416908 45417143 -151778289 - Lx LINE L1 -376 6278 6029 4 931 1486 94 33 0 chr1 45417142 45417354 -151778078 - Lx2 LINE L1 -782 5104 4886 4 931 1241 155 5 0 chr1 45417346 45417553 -151777879 + Lx2 LINE L1 4690 4897 -989 4 931 7562 82 3 0 chr1 45417572 45419026 -151776406 - L1_Mus1 LINE L1 0 6567 5109 4 931 7236 130 12 6 chr1 45419025 45420209 -151775223 - L1VL2 LINE L1 -451 3164 1974 4 931 2621 183 15 63 chr1 45420209 45420798 -151774634 - RLTR31_Mm LTR ERVK 0 561 1 4 931 6009 167 51 30 chr1 45420802 45422894 -151772538 - L1VL2 LINE L1 -1639 1976 22 4 931 1388 154 0 0 chr1 45423118 45423338 -151772094 + Lx2B LINE L1 5792 6011 -989 4 931 1606 50 0 5 chr1 45423339 45423542 -151771890 - L1_Mm LINE L1 -1803 4080 3879 4 931 738 37 47 0 chr1 45423542 45423649 -151771783 + L1Md_F2 LINE L1 6469 6580 -2 4 931 3915 199 65 73 chr1 45423649 45424094 -151771338 + Lx2B LINE L1 5999 6475 -525 4 931 240 35 0 0 chr1 45424094 45424123 -151771309 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 931 3915 199 65 73 chr1 45424123 45424156 -151771276 + Lx2B LINE L1 6476 6481 -519 4 931 1092 76 14 0 chr1 45424156 45424300 -151771132 - B1_Mm SINE Alu 0 147 2 4 931 3915 199 65 73 chr1 45424300 45424810 -151770622 + Lx2B LINE L1 6482 6980 -20 4 931 287 249 7 11 chr1 45425044 45425132 -151770300 + L1_Mur1 LINE L1 694 833 -6151 4 931 12039 186 83 8 chr1 45425293 45428503 -151766929 + L1_Mur1 LINE L1 709 4145 -1732 4 931 2759 149 124 4 chr1 45428503 45428995 -151766437 + Lx2 LINE L1 6447 6997 0 4 931 1684 228 94 5 chr1 45429837 45430220 -151765212 + MTC LTR MaLR 5 421 0 4 931 24 32 0 0 chr1 45430258 45430289 -151765143 + AT_rich Low_complexity Low_complexity 1 31 0 4 931 1663 48 17 25 chr1 45430787 45431005 -151764427 + L1Md_F3 LINE L1 6351 6562 -22 4 931 513 0 0 0 chr1 45431005 45431062 -151764370 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 931 1663 48 17 25 chr1 45431062 45431079 -151764353 + L1Md_F3 LINE L1 6563 6583 -1 4 931 726 116 8 0 chr1 45433167 45433288 -151762144 - Lx LINE L1 -5 6649 6528 4 931 33 25 0 0 chr1 45433985 45434025 -151761407 + AT_rich Low_complexity Low_complexity 1 40 0 4 931 360 0 0 0 chr1 45434732 45434772 -151760660 + (T)n Simple_repeat Simple_repeat 1 40 0 4 931 1185 55 0 0 chr1 45434772 45434918 -151760514 - B1_Mus2 SINE Alu 0 147 2 4 931 30 59 0 0 chr1 45435078 45435129 -151760303 + AT_rich Low_complexity Low_complexity 1 51 0 4 931 709 316 28 28 chr1 45435450 45435521 -151759911 + B4A SINE B4 1 72 -220 4 931 480 18 0 0 chr1 45435521 45435578 -151759854 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 931 709 316 28 28 chr1 45435578 45435796 -151759636 + B4A SINE B4 73 290 -2 4 931 207 69 0 0 chr1 45435822 45435851 -151759581 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 931 23 0 0 0 chr1 45436106 45436129 -151759303 + AT_rich Low_complexity Low_complexity 1 23 0 4 931 21 0 0 0 chr1 45436285 45436306 -151759126 + AT_rich Low_complexity Low_complexity 1 21 0 4 931 306 0 0 0 chr1 45436574 45436608 -151758824 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 931 191 88 29 0 chr1 45438052 45438086 -151757346 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 4 931 574 149 131 8 chr1 45438541 45438663 -151756769 + MTE2b LTR MaLR 241 377 -2 5 931 22 0 0 0 chr1 45440606 45440628 -151754804 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 26 30 0 0 chr1 45441919 45441952 -151753480 + AT_rich Low_complexity Low_complexity 1 33 0 5 931 33 80 0 0 chr1 45441982 45442057 -151753375 + AT_rich Low_complexity Low_complexity 1 75 0 5 931 229 350 49 16 chr1 45442337 45442459 -151752973 + Charlie2b DNA MER1_type 175 300 -2482 5 931 2336 88 29 56 chr1 45443904 45444278 -151751154 - L1_Mus2 LINE L1 0 6566 6203 5 931 261 0 0 0 chr1 45446150 45446179 -151749253 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 931 595 326 36 10 chr1 45447404 45447596 -151747836 + B3 SINE B2 7 203 -13 5 931 457 58 29 0 chr1 45449524 45449593 -151745839 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 5 931 1698 11 0 0 chr1 45453895 45454084 -151741348 - B2_Mm1a SINE B2 -4 189 1 5 931 6467 164 11 26 chr1 45454108 45455303 -151740129 - L1_Mm LINE L1 -162 5721 4545 5 931 6548 90 28 1 chr1 45455294 45456203 -151739229 + L1_Mus4 LINE L1 5696 6628 -8 5 931 1532 275 33 5 chr1 45456232 45456623 -151738809 + Lx6 LINE L1 6948 7349 -111 5 931 217 312 197 38 chr1 45456818 45457031 -151738401 + L2c LINE L2 2915 3161 -226 5 931 1193 218 407 34 chr1 45458174 45458205 -151737227 - B2_Mm2 SINE B2 -2 196 161 5 931 312 27 0 0 chr1 45458205 45458242 -151737190 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 5 931 1193 101 0 0 chr1 45458242 45458400 -151737032 - B2_Mm2 SINE B2 -35 160 3 5 931 904 32 0 16 chr1 45458438 45458564 -151736868 + (GTTTG)n Simple_repeat Simple_repeat 2 125 0 5 931 275 368 0 45 chr1 45458724 45458835 -151736597 - B1F SINE Alu -43 106 1 5 931 306 0 0 0 chr1 45459787 45459821 -151735611 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 931 23 33 0 0 chr1 45462350 45462380 -151733052 + AT_rich Low_complexity Low_complexity 1 30 0 5 931 25 31 0 0 chr1 45463349 45463381 -151732051 + AT_rich Low_complexity Low_complexity 1 32 0 5 931 508 197 26 60 chr1 45463686 45463837 -151731595 + Lx9 LINE L1 7491 7636 -8 5 931 315 0 0 0 chr1 45464232 45464267 -151731165 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 931 420 143 0 0 chr1 45464267 45464337 -151731095 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 931 758 94 8 0 chr1 45464963 45465080 -151730352 + (TA)n Simple_repeat Simple_repeat 1 118 0 5 931 2091 100 0 0 chr1 45465171 45465452 -151729980 - L1_Mus3 LINE L1 -152 6486 6206 5 931 675 109 21 35 chr1 45465452 45465595 -151729837 + L1_Mus3 LINE L1 6498 6638 0 5 931 251 203 0 15 chr1 45466688 45466753 -151728679 + GA-rich Low_complexity Low_complexity 3 66 0 5 931 3324 119 8 27 chr1 45467063 45467579 -151727853 - Lx LINE L1 -7 6647 6142 5 931 423 263 20 59 chr1 45468548 45468649 -151726783 + B3A SINE B2 5 101 -97 5 931 22 35 0 0 chr1 45470033 45470062 -151725370 + AT_rich Low_complexity Low_complexity 1 29 0 5 931 181 219 14 14 chr1 45470214 45470288 -151725144 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 5 931 4685 87 120 3 chr1 45471926 45472626 -151722806 - L1_Mus3 LINE L1 0 6638 5857 5 931 4180 61 7 0 chr1 45472626 45473164 -151722268 + L1_Mus2 LINE L1 5665 6206 -360 5 931 1884 65 4 12 chr1 45473161 45473411 -151722021 + L1_Mus2 LINE L1 6319 6566 0 5 931 1033 74 20 0 chr1 45473410 45473558 -151721874 + L1_Mus3 LINE L1 5739 5889 -749 5 931 22 35 0 0 chr1 45474691 45474720 -151720712 + AT_rich Low_complexity Low_complexity 1 29 0 5 931 226 282 39 0 chr1 45478366 45478444 -151716988 + ID4 SINE ID 2 82 -1 5 931 216 97 0 0 chr1 45478854 45478885 -151716547 + (A)n Simple_repeat Simple_repeat 1 31 0 5 931 380 336 25 75 chr1 45479982 45480143 -151715289 + B4A SINE B4 2 154 -138 5 931 207 0 0 0 chr1 45480203 45480226 -151715206 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 931 852 10 0 0 chr1 45480226 45480322 -151715110 + (GA)n Simple_repeat Simple_repeat 2 98 0 5 931 873 264 19 0 chr1 45480638 45480850 -151714582 - B3 SINE B2 0 216 1 5 931 1065 76 0 33 chr1 45481643 45481793 -151713639 + L1_Mus4 LINE L1 6290 6434 -202 5 116 4381 53 20 0 chr1 45481796 45482345 -151713087 - L1Md_F2 LINE L1 0 6582 6023 5 932 1409 77 5 9 chr1 45482344 45482554 -151712878 + L1_Mus4 LINE L1 6421 6629 -7 5 932 21 57 0 0 chr1 45482610 45482645 -151712787 + AT_rich Low_complexity Low_complexity 1 35 0 5 932 348 293 0 0 chr1 45483393 45483630 -151711802 + (TG)n Simple_repeat Simple_repeat 1 237 0 5 932 399 285 182 0 chr1 45483635 45483772 -151711660 - RSINE1 SINE B4 0 165 4 5 932 3324 134 13 6 chr1 45484845 45485372 -151710060 + Lx4A LINE L1 5650 6180 -878 5 932 30 0 0 0 chr1 45485372 45485402 -151710030 + AT_rich Low_complexity Low_complexity 1 30 0 5 932 299 330 68 83 chr1 45485489 45485782 -151709650 + MTEa LTR MaLR 79 365 -14 5 932 189 94 0 0 chr1 45485943 45485975 -151709457 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 932 545 260 47 8 chr1 45485981 45486109 -151709323 + ETnERV2-int LTR ERVK 7070 7202 -204 5 932 234 128 0 0 chr1 45487594 45487633 -151707799 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 932 1608 32 0 5 chr1 45488240 45488431 -151707001 + B2_Mm1t SINE B2 1 190 -3 5 932 23 0 0 0 chr1 45488472 45488495 -151706937 + AT_rich Low_complexity Low_complexity 1 23 0 5 932 431 266 223 34 chr1 45489322 45489497 -151705935 + MER20 DNA MER1_type 9 216 -3 5 932 282 218 91 82 chr1 45489613 45489723 -151705709 + MER63A DNA AcHobo 43 153 -57 5 932 1220 267 56 79 chr1 45489769 45489872 -151705560 + Lx6 LINE L1 6966 7062 -398 5 932 1189 107 16 22 chr1 45489872 45490054 -151705378 - B2_Mm2 SINE B2 -13 182 2 5 932 1220 267 56 79 chr1 45490054 45490393 -151705039 + Lx6 LINE L1 7063 7398 -62 5 932 260 53 26 0 chr1 45490393 45490431 -151705001 + (GGA)n Simple_repeat Simple_repeat 2 40 0 5 932 1214 95 6 0 chr1 45490431 45490610 -151704822 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 932 746 50 10 0 chr1 45490872 45490971 -151704461 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 5 932 252 0 0 0 chr1 45490972 45491000 -151704432 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 932 224 30 30 0 chr1 45492131 45492164 -151703268 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 932 305 289 29 58 chr1 45492481 45492584 -151702848 - PB1 SINE Alu -2 125 26 5 932 545 0 0 15 chr1 45493325 45493391 -151702041 + (TAA)n Simple_repeat Simple_repeat 2 66 0 5 932 22 35 0 0 chr1 45494170 45494199 -151701233 + AT_rich Low_complexity Low_complexity 1 29 0 5 932 207 69 0 0 chr1 45494251 45494280 -151701152 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 932 2201 153 15 72 chr1 45495832 45496304 -151699128 + RLTR31B_Mm LTR ERVK 1 445 -112 5 932 1057 270 4 0 chr1 45496694 45496946 -151698486 - Lx6 LINE L1 -5 7455 7203 5 932 219 195 12 47 chr1 45497121 45497186 -151698246 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 5 932 213 39 0 0 chr1 45497186 45497212 -151698220 + (CTG)n Simple_repeat Simple_repeat 1 26 0 5 932 219 195 12 47 chr1 45497212 45497232 -151698200 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 5 932 329 250 40 0 chr1 45497765 45497841 -151697591 + ID_B1 SINE B4 145 223 -1 5 932 408 111 0 0 chr1 45497842 45497905 -151697527 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 5 932 846 109 0 0 chr1 45497912 45498040 -151697392 + (GGAAA)n Simple_repeat Simple_repeat 3 130 0 5 932 342 276 120 16 chr1 45498087 45498212 -151697220 - B1F1 SINE Alu 0 149 12 5 932 277 291 25 12 chr1 45498148 45498228 -151697204 - MT2B2 LTR ERVL -345 239 159 5 932 234 403 30 30 chr1 45499820 45499953 -151695479 + B4A SINE B4 2 134 -158 5 932 1897 30 0 0 chr1 45500630 45500862 -151694570 + MTA_Mm-int LTR MaLR 1 232 -866 1 932 8216 50 1 0 chr1 45500862 45502410 -151693022 - L1Md_F2 LINE L1 -1 6581 5032 2 932 7149 35 3 0 chr1 45502410 45503296 -151692136 + MTA_Mm-int LTR MaLR 210 1098 0 1 932 3273 38 13 0 chr1 45503296 45503687 -151691745 + MTA_Mm LTR MaLR 1 396 0 1 932 462 268 32 8 chr1 45503797 45503921 -151691511 + RSINE1 SINE B4 3 129 -36 3 932 25 65 0 0 chr1 45503980 45504026 -151691406 + AT_rich Low_complexity Low_complexity 1 46 0 4 932 24 0 0 0 chr1 45504374 45504398 -151691034 + AT_rich Low_complexity Low_complexity 1 24 0 5 932 29 0 0 0 chr1 45504488 45504517 -151690915 + AT_rich Low_complexity Low_complexity 1 29 0 6 932 229 288 51 0 chr1 45506020 45506079 -151689353 + PB1D9 SINE Alu 59 120 0 7 932 408 302 79 7 chr1 45506100 45506240 -151689192 + B3A SINE B2 3 152 -46 8 932 494 31 0 15 chr1 45506242 45506307 -151689125 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 932 246 194 0 0 chr1 45506310 45506377 -151689055 + GA-rich Low_complexity Low_complexity 2 68 0 1 932 819 163 0 0 chr1 45507504 45507651 -151687781 + (TA)n Simple_repeat Simple_repeat 2 148 0 1 932 1601 190 100 8 chr1 45508566 45508927 -151686505 - ORR1B1 LTR MaLR 0 394 1 1 932 892 249 21 16 chr1 45509563 45509755 -151685677 + ID_B1 SINE B4 3 195 -29 1 932 328 342 17 0 chr1 45509650 45509767 -151685665 + B1_Mur4 SINE Alu 13 131 -19 1 932 1474 199 102 32 chr1 45511509 45511851 -151683581 - ORR1D1 LTR MaLR 0 374 9 1 932 21 36 0 0 chr1 45511851 45511879 -151683553 + AT_rich Low_complexity Low_complexity 1 28 0 1 932 654 131 0 76 chr1 45511886 45512018 -151683414 + Lx LINE L1 6527 6648 -6 1 932 23 0 0 0 chr1 45513529 45513552 -151681880 + AT_rich Low_complexity Low_complexity 1 23 0 1 932 429 352 94 43 chr1 45513628 45514097 -151681335 + Lx8 LINE L1 6979 7471 -2 1 932 21 36 0 0 chr1 45515024 45515052 -151680380 + AT_rich Low_complexity Low_complexity 1 28 0 2 932 573 229 14 58 chr1 45515375 45515514 -151679918 + B1_Mur4 SINE Alu 3 135 -15 2 932 984 53 0 8 chr1 45515667 45515792 -151679640 + B1_Mm SINE Alu 14 137 -10 2 932 207 0 0 0 chr1 45515792 45515815 -151679617 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 932 1863 72 125 4 chr1 45517080 45517359 -151678073 - L1Md_F2 LINE L1 0 6582 6270 2 932 628 294 42 9 chr1 45517985 45518201 -151677231 + ID_B1 SINE B4 1 223 -1 2 932 22 56 0 0 chr1 45518201 45518237 -151677195 + AT_rich Low_complexity Low_complexity 1 36 0 2 932 26 30 0 0 chr1 45518614 45518647 -151676785 + AT_rich Low_complexity Low_complexity 1 33 0 2 932 1449 245 92 13 chr1 45520004 45520384 -151675048 - MTD LTR MaLR -9 410 1 2 932 21 0 0 0 chr1 45521256 45521277 -151674155 + AT_rich Low_complexity Low_complexity 1 21 0 2 932 26 0 0 0 chr1 45521601 45521627 -151673805 + AT_rich Low_complexity Low_complexity 1 26 0 3 932 22 111 0 0 chr1 45523118 45523217 -151672215 + AT_rich Low_complexity Low_complexity 1 99 0 3 932 543 271 94 76 chr1 45523247 45523458 -151671974 - B3A SINE B2 0 216 2 3 932 243 328 57 0 chr1 45524404 45524526 -151670906 - RMER12 LTR ERVK -455 867 739 3 932 267 309 86 22 chr1 45524542 45524681 -151670751 + L1MC3 LINE L1 6702 6849 -936 3 932 802 289 148 16 chr1 45524866 45525415 -151670017 + L1MC3 LINE L1 7076 7696 -89 3 932 3941 52 32 4 chr1 45525625 45526148 -151669284 + L1Md_F2 LINE L1 6045 6582 0 3 932 277 300 50 0 chr1 45526850 45526930 -151668502 + PB1D9 SINE Alu 36 119 -1 3 932 199 270 168 10 chr1 45527256 45527357 -151668075 - MIRb SINE MIR -54 214 98 3 932 749 201 8 0 chr1 45527840 45527974 -151667458 - B1_Mus2 SINE Alu 0 147 13 3 932 363 106 0 0 chr1 45529059 45529125 -151666307 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 3 932 194 343 33 73 chr1 45529270 45529421 -151666011 - L2c LINE L2 -8 3379 3235 4 932 945 100 6 56 chr1 45532240 45532420 -151663012 + Lx3A LINE L1 6801 6971 -10 4 932 329 0 24 0 chr1 45532421 45532462 -151662970 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 4 932 303 309 44 33 chr1 45533005 45533186 -151662246 + CR1_Mam LINE CR1 1251 1433 -771 4 932 2960 110 10 64 chr1 45533895 45534417 -151661015 - Lx2 LINE L1 -860 6137 5662 4 932 528 16 0 0 chr1 45534433 45534494 -151660938 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 932 224 333 159 0 chr1 45534501 45534570 -151660862 - RSINE1 SINE B4 -29 136 57 4 932 718 76 0 0 chr1 45534949 45535046 -151660386 + L1Md_F2 LINE L1 5502 5614 -683 4 932 7512 63 24 4 chr1 45535047 45536024 -151659408 + L1Md_F2 LINE L1 5587 6582 0 4 932 360 236 0 53 chr1 45536104 45536180 -151659252 - RSINE1 SINE B4 -90 75 4 4 932 225 0 0 0 chr1 45537707 45537732 -151657700 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 932 207 0 0 0 chr1 45538496 45538519 -151656913 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 932 386 20 20 0 chr1 45540301 45540352 -151655080 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 932 679 238 0 0 chr1 45541048 45541174 -151654258 - B3 SINE B2 -86 130 5 5 932 25 0 0 0 chr1 45541428 45541453 -151653979 + AT_rich Low_complexity Low_complexity 1 25 0 5 932 534 286 174 23 chr1 45541596 45541854 -151653578 - MLT1D LTR MaLR -5 500 204 5 932 909 185 0 0 chr1 45541854 45542032 -151653400 + GA-rich Low_complexity Low_complexity 2 179 0 5 932 231 255 170 54 chr1 45542271 45542383 -151653049 + L2a LINE L2 3302 3426 0 5 932 213 39 0 0 chr1 45542633 45542659 -151652773 + (TTATA)n Simple_repeat Simple_repeat 4 29 0 5 932 319 307 57 38 chr1 45542763 45542922 -151652510 - B4A SINE B4 -130 162 1 5 932 238 340 0 67 chr1 45542996 45543100 -151652332 + PB1D10 SINE Alu 21 117 0 5 932 270 291 38 19 chr1 45543058 45543163 -151652269 + B4A SINE B4 186 292 0 5 932 188 368 0 54 chr1 45543765 45543857 -151651575 + L2c LINE L2 3293 3379 -8 6 932 220 360 0 0 chr1 45544670 45544745 -151650687 + CT-rich Low_complexity Low_complexity 3 77 0 6 932 261 313 20 29 chr1 45545067 45545169 -151650263 - MIR SINE MIR -78 130 30 6 932 198 71 0 0 chr1 45545619 45545647 -151649785 + (T)n Simple_repeat Simple_repeat 1 28 0 6 932 425 304 33 13 chr1 45546440 45546590 -151648842 + ID_B1 SINE B4 71 223 -1 6 932 740 144 44 29 chr1 45546459 45546595 -151648837 + B1_Mur2 SINE Alu 12 149 0 6 932 186 103 0 0 chr1 45546731 45546760 -151648672 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 6 932 318 26 0 0 chr1 45546761 45546800 -151648632 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 932 1218 177 22 14 chr1 45546837 45547060 -151648372 + URR1B DNA MER1_type 1 225 0 6 932 1011 272 152 19 chr1 45547384 45547804 -151647628 + Lx8 LINE L1 6996 7471 -2 6 932 1002 248 107 20 chr1 45547900 45548223 -151647209 + MTD LTR MaLR 20 379 0 7 932 196 28 54 27 chr1 45548309 45548346 -151647086 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 932 35 0 0 0 chr1 45550408 45550443 -151644989 + AT_rich Low_complexity Low_complexity 1 35 0 7 932 1988 155 200 30 chr1 45550556 45551056 -151644376 - RMER4B LTR ERVK 0 585 1 7 932 181 232 29 0 chr1 45551134 45551203 -151644229 + (TATG)n Simple_repeat Simple_repeat 4 74 0 7 932 964 175 0 0 chr1 45551715 45551875 -151643557 + RMER6C LTR ERVK 1 160 -560 7 932 232 264 106 26 chr1 45551877 45551990 -151643442 - RMER4B LTR ERVK -207 378 257 7 932 1981 172 167 0 chr1 45551985 45552427 -151643005 + RMER6C LTR ERVK 158 673 -17 7 932 368 310 0 0 chr1 45553906 45553993 -151641439 + B4A SINE B4 1 87 -205 7 932 631 268 113 0 chr1 45554100 45554294 -151641138 + B3 SINE B2 1 216 0 7 932 296 325 8 84 chr1 45554349 45554480 -151640952 + RSINE1 SINE B4 44 164 -1 7 932 335 297 0 13 chr1 45554518 45554593 -151640839 + B4A SINE B4 218 291 -1 7 932 234 0 0 0 chr1 45555648 45555674 -151639758 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 932 379 373 84 32 chr1 45555840 45556186 -151639246 + MLT1J LTR MaLR 82 445 -67 8 932 1049 116 7 0 chr1 45556976 45557122 -151638310 + B1_Mus2 SINE Alu 1 147 0 8 932 255 61 0 0 chr1 45557126 45557159 -151638273 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 8 932 234 254 18 0 chr1 45558876 45558931 -151636501 + GA-rich Low_complexity Low_complexity 3 58 0 8 932 235 357 73 36 chr1 45560609 45560856 -151634576 + MIRc SINE MIR 9 264 -4 8 932 2077 205 86 16 chr1 45561590 45562096 -151633336 + Lx9 LINE L1 6975 7513 -131 8 932 222 37 0 0 chr1 45562096 45562123 -151633309 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 932 2077 205 86 16 chr1 45562123 45562162 -151633270 + Lx9 LINE L1 7514 7557 -87 8 932 22 0 0 0 chr1 45563238 45563260 -151632172 + AT_rich Low_complexity Low_complexity 1 22 0 8 932 2149 219 13 49 chr1 45563350 45563830 -151631602 + MT2A LTR ERVL 3 464 -69 8 932 330 67 0 0 chr1 45563830 45563875 -151631557 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 932 2149 219 13 49 chr1 45563875 45563945 -151631487 + MT2A LTR ERVL 465 533 0 8 932 853 319 23 38 chr1 45564077 45564338 -151631094 - B4A SINE B4 -35 257 1 9 932 414 299 155 41 chr1 45564669 45564945 -151630487 - MT2A LTR ERVL -52 503 192 9 932 269 269 63 21 chr1 45565001 45565096 -151630336 - MTEa LTR MaLR -276 103 5 9 932 629 318 74 41 chr1 45565160 45565428 -151630004 - ORR1E LTR MaLR -98 272 1 9 932 739 296 10 48 chr1 45565724 45565930 -151629502 + B3A SINE B2 1 198 0 9 932 402 115 0 0 chr1 45565994 45566055 -151629377 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 932 509 230 26 6 chr1 45566324 45566485 -151628947 - L1MA4 LINE L1 -372 5928 5748 9 932 421 97 0 27 chr1 45566493 45566567 -151628865 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 932 354 45 0 0 chr1 45566566 45566610 -151628822 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 932 1290 56 0 0 chr1 45566610 45566790 -151628642 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 932 233 315 9 53 chr1 45567583 45567697 -151627735 - MIR SINE MIR -58 204 96 1 932 330 247 169 0 chr1 45568451 45568540 -151626892 - RSINE1 SINE B4 -53 112 9 1 932 425 163 196 0 chr1 45569630 45569722 -151625710 - B1_Mus2 SINE Alu -36 111 2 1 932 343 259 107 36 chr1 45570962 45571102 -151624330 + RMER15 LTR ERVL 426 575 0 1 932 23 0 0 0 chr1 45571209 45571232 -151624200 + AT_rich Low_complexity Low_complexity 1 23 0 1 932 410 344 49 0 chr1 45571278 45571441 -151623991 + MIR SINE MIR 37 207 -55 1 932 2077 122 0 0 chr1 45571447 45571758 -151623674 - L1_Mm LINE L1 -165 5718 5408 1 932 763 11 0 11 chr1 45571753 45571847 -151623585 + Lx LINE L1 5708 5800 -1197 1 932 3177 63 0 2 chr1 45571847 45572266 -151623166 - L1_Mus1 LINE L1 0 6567 6168 1 932 5641 107 33 6 chr1 45572258 45573115 -151622317 + Lx LINE L1 5775 6654 0 1 932 2514 123 37 7 chr1 45574539 45574925 -151620507 + L1_Mus3 LINE L1 6214 6614 -24 1 932 994 83 13 27 chr1 45574925 45575074 -151620358 + B1_Mm SINE Alu 1 147 0 1 932 2514 123 37 7 chr1 45575074 45575096 -151620336 + L1_Mus3 LINE L1 6615 6634 -4 1 932 192 40 0 0 chr1 45575122 45575147 -151620285 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 932 22 0 0 0 chr1 45575178 45575200 -151620232 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 3410 97 39 4 chr1 45575669 45576154 -151619278 + L1_Mus3 LINE L1 6130 6631 -7 1 932 24 0 0 0 chr1 45576162 45576186 -151619246 + AT_rich Low_complexity Low_complexity 1 24 0 1 932 201 143 0 45 chr1 45576318 45576362 -151619070 + A-rich Low_complexity Low_complexity 5 46 0 1 932 336 102 0 0 chr1 45576404 45576453 -151618979 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 932 216 0 0 0 chr1 45577063 45577087 -151618345 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 932 26 0 0 0 chr1 45578009 45578035 -151617397 + AT_rich Low_complexity Low_complexity 1 26 0 1 932 347 235 0 10 chr1 45578061 45578160 -151617272 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 932 360 0 0 0 chr1 45578160 45578200 -151617232 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 932 482 254 18 35 chr1 45578337 45578451 -151616981 + RLTR23 LTR ERV1 8 119 -311 1 932 784 293 59 32 chr1 45578505 45578844 -151616588 + RLTR23 LTR ERV1 81 428 -2 1 932 418 296 92 9 chr1 45578845 45578954 -151616478 + RLTR21 LTR ERVK 16 133 -1439 1 932 1902 153 129 3 chr1 45578931 45579310 -151616122 - BGLII_B LTR ERVK -11 430 4 1 932 5603 134 17 34 chr1 45579310 45580254 -151615178 + RLTR21 LTR ERVK 106 1033 -539 1 932 751 311 48 36 chr1 45580254 45580591 -151614841 - RLTR23 LTR ERV1 0 430 90 1 932 555 206 6 181 chr1 45580619 45580779 -151614653 - RLTR23 LTR ERV1 -291 139 8 1 932 1117 229 53 9 chr1 45581705 45582026 -151613406 - Lx7 LINE L1 0 7696 7362 1 932 606 14 0 0 chr1 45582115 45582186 -151613246 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1 932 8677 79 7 33 chr1 45582271 45582337 -151613095 + Lx3_Mus LINE L1 4609 4659 -1227 1 932 1449 55 0 6 chr1 45582337 45582519 -151612913 - B2_Mm2 SINE B2 -14 181 1 1 932 8677 94 23 45 chr1 45582519 45584893 -151610539 + Lx3_Mus LINE L1 4660 6986 -23 1 932 252 0 0 0 chr1 45584893 45584921 -151610511 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1 932 4147 218 46 27 chr1 45584929 45586003 -151609429 + Lx9 LINE L1 6548 7641 -3 1 932 3242 109 6 0 chr1 45586065 45586580 -151608852 - L1_Mm LINE L1 -2145 3738 3221 1 932 5575 82 3 7 chr1 45586582 45587329 -151608103 + L1_Mus1 LINE L1 5823 6566 -1 1 932 1109 83 0 7 chr1 45587353 45587499 -151607933 + B1_Mus1 SINE Alu 1 145 -3 1 932 1543 87 0 0 chr1 45587845 45588053 -151607379 + L1_Mus2 LINE L1 6359 6566 0 1 932 741 279 13 6 chr1 45590065 45590224 -151605208 + B3 SINE B2 1 160 -56 1 932 847 283 195 18 chr1 45590247 45590578 -151604854 + MTD LTR MaLR 20 419 0 1 932 1059 128 0 6 chr1 45591146 45591303 -151604129 + B2_Mm2 SINE B2 2 157 -38 1 932 330 26 0 0 chr1 45591303 45591342 -151604090 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1 932 219 69 0 0 chr1 45591991 45592020 -151603412 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 932 21 0 0 0 chr1 45592448 45592469 -151602963 + AT_rich Low_complexity Low_complexity 1 21 0 1 932 1145 75 0 0 chr1 45592702 45592849 -151602583 + B1_Mm SINE Alu 1 147 0 1 932 4644 94 11 0 chr1 45592860 45593582 -151601850 - MusHAL1 LINE L1 -632 2080 1351 1 932 281 105 0 0 chr1 45594136 45594174 -151601258 + B1_Mur4 SINE Alu 2 39 -111 1 932 779 208 68 17 chr1 45594235 45594411 -151601021 + ORR1D1 LTR MaLR 3 187 -187 1 932 847 115 0 13 chr1 45594443 45594602 -151600830 + (TC)n Simple_repeat Simple_repeat 2 158 0 1 932 320 278 10 20 chr1 45594602 45594690 -151600742 + ORR1D1 LTR MaLR 177 264 -110 1 932 3151 51 10 0 chr1 45594921 45595313 -151600119 + MTA_Mm LTR MaLR 1 396 0 1 932 1453 280 90 22 chr1 45595615 45596266 -151599166 + RMER1B Other Other 1 512 -554 1 932 3560 221 57 125 chr1 45596340 45597325 -151598107 + RMER1A Other Other 1 884 -146 1 932 354 45 0 0 chr1 45597325 45597369 -151598063 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 932 3560 221 57 125 chr1 45597369 45597481 -151597951 + RMER1A Other Other 885 1022 -8 1 932 402 134 0 0 chr1 45597481 45597548 -151597884 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 932 231 271 0 0 chr1 45598458 45598504 -151596928 + A-rich Low_complexity Low_complexity 1 46 0 1 932 213 65 0 0 chr1 45598504 45598535 -151596897 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1 932 231 271 0 0 chr1 45598535 45598558 -151596874 + A-rich Low_complexity Low_complexity 47 69 0 1 932 378 0 0 0 chr1 45599412 45599454 -151595978 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 932 910 264 5 68 chr1 45599473 45599680 -151595752 - B3A SINE B2 -22 194 1 1 932 542 282 47 0 chr1 45600156 45600326 -151595106 - Lx8 LINE L1 -235 7238 7061 1 932 23 54 0 0 chr1 45600396 45600433 -151594999 + AT_rich Low_complexity Low_complexity 1 37 0 1 932 345 47 0 0 chr1 45600506 45600549 -151594883 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 932 611 275 14 28 chr1 45600551 45600785 -151594647 - MTE2b LTR MaLR -189 230 2 1 932 6002 218 51 26 chr1 45601108 45601747 -151593685 + L1_Mur2 LINE L1 886 1474 -4403 1 932 396 0 0 0 chr1 45601747 45601791 -151593641 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 932 6002 191 56 28 chr1 45601791 45603057 -151592375 + L1_Mur2 LINE L1 1475 2786 -3091 1 932 1483 247 109 13 chr1 45603057 45603505 -151591927 + RLTR16 LTR ERVK 3 493 -12 1 932 1066 156 54 4 chr1 45603660 45603747 -151591685 + L1_Mur2 LINE L1 2786 2881 -2996 1 932 849 110 0 0 chr1 45603747 45603874 -151591558 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 1 932 1066 156 54 4 chr1 45603874 45604025 -151591407 + L1_Mur2 LINE L1 2882 3036 -2841 1 932 1461 162 72 29 chr1 45604023 45604398 -151591034 + L1_Mur2 LINE L1 3312 3702 -2175 1 932 467 275 131 0 chr1 45604398 45604558 -151590874 + Lx5 LINE L1 6839 7019 -31 1 932 1325 265 60 65 chr1 45604570 45605074 -151590358 + RLTR20B3 LTR ERVK 21 521 -56 1 932 2028 110 9 51 chr1 45605194 45605530 -151589902 - RLTRETN_Mm LTR ERVK 0 322 1 1 932 1300 270 50 14 chr1 45605532 45605896 -151589536 - MTE2a LTR MaLR -2 377 1 1 932 821 148 23 0 chr1 45606553 45606681 -151588751 + B1_Mus1 SINE Alu 18 148 0 1 932 423 98 0 0 chr1 45607163 45607224 -151588208 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 932 247 183 0 40 chr1 45608667 45608741 -151586691 + A-rich Low_complexity Low_complexity 2 72 0 1 932 195 404 60 36 chr1 45608789 45608956 -151586476 + MIRb SINE MIR 24 194 -74 1 932 1112 57 0 54 chr1 45609239 45609388 -151586044 - B1_Mus1 SINE Alu -7 141 1 1 932 3440 77 2 7 chr1 45609414 45609874 -151585558 - L1Md_F2 LINE L1 -10 6572 6115 1 932 2740 50 6 0 chr1 45609874 45610232 -151585200 + L1Md_F2 LINE L1 5758 6117 -465 1 932 2872 184 54 26 chr1 45610306 45610719 -151584713 + Lx5 LINE L1 6427 6835 -215 1 932 4799 128 26 94 chr1 45610719 45611686 -151583746 + RLTR13D6 LTR ERVK 2 902 0 1 932 1018 181 117 36 chr1 45611686 45611879 -151583553 + Lx5 LINE L1 6836 7050 0 1 932 192 125 0 0 chr1 45611881 45611913 -151583519 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 932 396 0 0 0 chr1 45612133 45612177 -151583255 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 933 374 258 14 7 chr1 45613799 45613972 -151581460 + L1M3 LINE L1 3778 3956 -2190 1 933 3515 73 32 2 chr1 45613991 45614459 -151580973 + RLTR45 LTR ERVK 1 482 0 1 933 4080 69 110 19 chr1 45614459 45615093 -151580339 + RLTR45-int LTR ERVK 1 692 -6552 1 933 1079 51 0 0 chr1 45615382 45615520 -151579912 + RLTR45-int LTR ERVK 681 818 -6426 1 933 10857 45 56 7 chr1 45616319 45618121 -151577311 + RLTR45-int LTR ERVK 1322 3212 -4032 1 933 3727 80 33 36 chr1 45618091 45618700 -151576732 + RLTR45-int LTR ERVK 3380 3986 -3258 1 933 7478 45 17 19 chr1 45618693 45619703 -151575729 + RLTR45-int LTR ERVK 5065 6072 -1172 1 933 1995 107 13 3 chr1 45619725 45620024 -151575408 + RLTR13B1 LTR ERVK 207 508 -385 1 933 7313 43 3 0 chr1 45620024 45620923 -151574509 + RLTR45-int LTR ERVK 6333 7234 -10 1 933 3216 79 55 28 chr1 45620933 45621402 -151574030 + RLTR45 LTR ERVK 1 482 0 1 933 521 298 201 34 chr1 45621402 45621646 -151573786 + MTD LTR MaLR 143 419 0 1 933 409 267 131 56 chr1 45621660 45622033 -151573399 + L1M3 LINE L1 4273 4673 -1467 1 933 673 248 184 17 chr1 45622167 45622401 -151573031 - B4 SINE B4 -18 274 2 1 933 2806 203 78 28 chr1 45623876 45623992 -151571440 + Lx6 LINE L1 6356 6507 -953 1 933 345 47 0 0 chr1 45623992 45624035 -151571397 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 933 2806 203 78 28 chr1 45624035 45624622 -151570810 + Lx6 LINE L1 6508 7093 -367 1 933 2243 149 54 2 chr1 45624627 45625050 -151570382 - BGLII_A LTR ERVK 0 445 1 1 933 180 0 0 0 chr1 45625078 45625098 -151570334 + (T)n Simple_repeat Simple_repeat 1 20 0 1 933 360 121 0 0 chr1 45625101 45625159 -151570273 - MYSERV6-int LTR ERVK -36 2806 2749 1 933 1046 81 0 26 chr1 45625159 45625299 -151570133 + B1_Mus1 SINE Alu 1 138 -10 1 933 258 32 0 0 chr1 45625299 45625330 -151570102 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 933 1046 81 0 26 chr1 45625330 45625341 -151570091 + B1_Mus1 SINE Alu 139 148 0 1 933 1014 159 0 16 chr1 45625378 45625563 -151569869 - MYSERV6-int LTR ERVK -416 2426 2245 1 933 636 211 25 0 chr1 45625581 45625742 -151569690 - MYSERV6-int LTR ERVK -700 1626 1462 1 933 7839 45 1 1 chr1 45625745 45627105 -151568327 - L1Md_F2 LINE L1 0 6582 5222 1 933 2059 106 25 25 chr1 45627121 45627487 -151567945 - MYSERV6-int LTR ERVK -924 1402 1037 1 933 242 247 101 45 chr1 45627487 45627576 -151567856 - RMER4B LTR ERVK -49 536 443 1 933 12134 251 43 38 chr1 45627602 45629587 -151565845 - MYSERV6-int LTR ERVK -4346 4613 3381 1 933 4698 112 27 72 chr1 45629587 45630428 -151565004 + RLTR13B4 LTR ERVK 1 803 0 1 933 12134 219 23 25 chr1 45630428 45631119 -151564313 - MYSERV6-int LTR ERVK -5579 3380 2691 1 933 282 29 0 0 chr1 45631119 45631154 -151564278 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 933 12134 219 23 25 chr1 45631154 45631923 -151563509 - MYSERV6-int LTR ERVK -6269 2690 1965 1 933 1395 212 60 15 chr1 45631923 45632320 -151563112 - RLTR9F LTR ERVK 0 415 1 1 933 12134 219 23 25 chr1 45632320 45632637 -151562795 - MYSERV6-int LTR ERVK -6995 1964 1650 1 933 1258 282 64 4 chr1 45633010 45633465 -151561967 - RLTR6-int LTR ERV1 -2398 5380 4899 1 933 281 241 12 12 chr1 45633872 45633956 -151561476 - RLTR6-int LTR ERV1 -3190 4416 4333 1 933 348 282 8 8 chr1 45633962 45634080 -151561352 - RLTR14-int LTR ERV1 -2719 2598 2481 1 933 325 329 26 21 chr1 45635482 45635791 -151559641 + MURVY-int LTR ERV1 7052 7165 -287 1 933 1305 203 17 0 chr1 45635793 45636093 -151559339 - L1Md_F LINE L1 -5587 932 628 2 933 463 244 16 8 chr1 45636101 45636229 -151559203 - L1Md_F LINE L1 -5813 706 578 2 933 439 247 6 95 chr1 45636358 45636537 -151558895 - L1VL1 LINE L1 -6023 399 237 2 933 362 276 0 0 chr1 45636972 45637070 -151558362 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 933 1195 196 40 117 chr1 45637829 45638273 -151557159 - RMER17C LTR ERVK 0 410 1 2 933 2238 151 21 59 chr1 45638350 45638823 -151556609 - RMER17C-int LTR ERVK -1653 1585 1131 2 933 2635 114 47 14 chr1 45638866 45639293 -151556139 - BGLII_B LTR ERVK 0 441 1 2 933 207 0 0 0 chr1 45639587 45639610 -151555822 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 933 1178 209 24 100 chr1 45639612 45640021 -151555411 - RMER17C-int LTR ERVK -2636 602 225 2 933 365 193 86 60 chr1 45640152 45640268 -151555164 - RMER17C LTR ERVK -2 408 290 2 933 485 229 38 67 chr1 45640268 45640538 -151554894 - L1M3 LINE L1 -781 5519 5254 2 933 21 0 0 0 chr1 45641638 45641659 -151553773 + AT_rich Low_complexity Low_complexity 1 21 0 2 933 304 335 58 12 chr1 45642015 45642187 -151553245 - MIR SINE MIR -68 194 15 2 933 388 272 50 35 chr1 45643177 45643357 -151552075 + Lx8 LINE L1 6198 6379 -1317 2 933 2006 171 43 90 chr1 45644066 45644534 -151550898 - RLTR41 LTR ERV1 0 446 1 2 933 215 348 146 38 chr1 45647160 45647345 -151548087 - B4A SINE B4 0 292 88 2 933 1005 176 128 48 chr1 45647338 45647399 -151548033 - RLTR25B LTR ERVK -17 1011 954 2 933 2614 70 169 19 chr1 45647399 45647862 -151547570 + RLTR47_MM LTR ERV1 1 532 0 2 933 1005 176 128 48 chr1 45647862 45647981 -151547451 - RLTR25B LTR ERVK -75 953 815 2 933 201 39 0 0 chr1 45647981 45648007 -151547425 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 933 615 14 0 0 chr1 45648007 45648078 -151547354 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 933 1005 176 128 48 chr1 45648078 45648146 -151547286 - RLTR25B LTR ERVK -214 814 744 2 933 624 206 14 22 chr1 45648361 45648500 -151546932 + Lx7 LINE L1 6844 6981 -715 2 933 1087 197 0 129 chr1 45648510 45648579 -151546853 + Lx7 LINE L1 7372 7434 -262 2 933 1133 73 0 0 chr1 45648579 45648716 -151546716 + B1_Mus2 SINE Alu 2 138 -9 2 933 261 0 0 0 chr1 45648716 45648745 -151546687 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 933 1087 197 0 129 chr1 45648745 45649047 -151546385 + Lx7 LINE L1 7435 7695 -1 2 933 381 349 26 33 chr1 45649052 45649203 -151546229 + B3A SINE B2 27 176 -22 2 933 21 36 0 0 chr1 45649289 45649317 -151546115 + AT_rich Low_complexity Low_complexity 1 28 0 2 933 313 152 71 26 chr1 45650035 45650190 -151545242 + (TA)n Simple_repeat Simple_repeat 1 162 0 2 933 41 66 0 0 chr1 45650213 45650289 -151545143 + AT_rich Low_complexity Low_complexity 1 76 0 2 933 1142 260 68 87 chr1 45650915 45651034 -151544398 + MTD LTR MaLR 1 127 -292 2 933 6370 62 6 22 chr1 45651034 45651869 -151543563 - RLTR13B2 LTR ERVK 0 822 1 2 933 1142 260 68 87 chr1 45651869 45652174 -151543258 + MTD LTR MaLR 128 417 -2 2 933 237 125 0 0 chr1 45652280 45652320 -151543112 - B1_Mur4 SINE Alu -3 147 108 2 933 225 0 0 0 chr1 45654139 45654164 -151541268 + (CAGT)n Simple_repeat Simple_repeat 3 27 0 2 933 669 144 9 0 chr1 45654886 45654997 -151540435 - L1VL2 LINE L1 -5937 398 287 2 933 22 0 0 0 chr1 45655002 45655024 -151540408 + AT_rich Low_complexity Low_complexity 1 22 0 2 933 299 235 12 0 chr1 45655076 45655157 -151540275 - Lx9 LINE L1 -169 7475 7394 2 933 1123 243 51 46 chr1 45655157 45655546 -151539886 + Lx9 LINE L1 6974 7364 -280 2 933 217 382 9 35 chr1 45655585 45655699 -151539733 - B3A SINE B2 0 198 88 2 933 180 0 0 0 chr1 45656099 45656119 -151539313 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 933 25 0 0 0 chr1 45656265 45656290 -151539142 + AT_rich Low_complexity Low_complexity 1 25 0 2 933 281 340 115 41 chr1 45657096 45657366 -151538066 - L3b LINE CR1 -171 311 22 2 933 470 139 58 27 chr1 45658235 45658496 -151536936 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 2 933 21 57 0 0 chr1 45658499 45658534 -151536898 + AT_rich Low_complexity Low_complexity 1 35 0 2 933 535 239 93 5 chr1 45658645 45658859 -151536573 + L1MA8 LINE L1 6048 6280 -11 2 933 909 94 58 0 chr1 45659158 45659296 -151536136 + B1_Mm SINE Alu 2 147 0 2 933 23 0 0 0 chr1 45660328 45660351 -151535081 + AT_rich Low_complexity Low_complexity 1 23 0 2 933 252 0 0 0 chr1 45660642 45660670 -151534762 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 933 261 0 0 0 chr1 45660670 45660698 -151534734 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 933 2788 209 76 9 chr1 45660708 45661458 -151533974 + Lx9 LINE L1 6838 7637 -7 2 933 24 32 0 0 chr1 45662281 45662312 -151533120 + AT_rich Low_complexity Low_complexity 1 31 0 2 933 3072 188 46 34 chr1 45662391 45662518 -151532914 + Lx2 LINE L1 5179 5294 -592 2 933 1256 100 0 27 chr1 45662518 45662703 -151532729 + B2_Mm2 SINE B2 2 181 -14 2 933 7467 145 60 13 chr1 45662703 45664214 -151531218 + Lx2 LINE L1 5295 6864 -133 2 933 204 40 0 0 chr1 45664214 45664239 -151531193 + (TGGG)n Simple_repeat Simple_repeat 3 27 0 2 933 7467 135 64 8 chr1 45664239 45664352 -151531080 + Lx2 LINE L1 6865 6996 -1 2 933 2047 197 40 7 chr1 45665623 45666027 -151529405 - MTC LTR MaLR 0 421 5 2 933 6742 98 21 7 chr1 45666090 45667444 -151527988 - L1_Mus1 LINE L1 0 6567 5178 2 933 2329 72 119 11 chr1 45667449 45667801 -151527631 + RLTR10 LTR ERVK 1 390 0 2 933 5514 31 13 0 chr1 45667801 45668483 -151526949 + RLTR10-int LTR ERVK 302 992 -995 2 933 1695 24 0 0 chr1 45668765 45668971 -151526461 + RLTR10-int LTR ERVK 992 1197 -790 2 933 395 0 0 0 chr1 45668967 45669015 -151526417 - IAPEz-int LTR ERVK -5075 1406 1359 2 933 3674 59 2 18 chr1 45669015 45669518 -151525914 - IAPEz-int LTR ERVK -5819 662 168 2 933 226 327 0 0 chr1 45669518 45669573 -151525859 - RLTR27 LTR ERVK -34 275 221 2 933 966 75 76 70 chr1 45669573 45669744 -151525688 - IAPEz-int LTR ERVK -6288 193 22 2 933 261 149 56 69 chr1 45669749 45669821 -151525611 - IAPEz-int LTR ERVK -1914 73 3 2 933 2478 109 94 29 chr1 45669823 45670269 -151525163 - IAPLTR2_Mm LTR ERVK 0 475 1 2 933 24955 112 14 15 chr1 45670271 45674917 -151520515 - L1Md_F LINE L1 -707 5176 527 2 933 207 69 0 0 chr1 45675033 45675062 -151520370 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 933 1655 334 65 25 chr1 45675137 45675984 -151519448 + Lx7 LINE L1 6231 7111 -585 2 933 385 273 170 5 chr1 45676317 45676505 -151518927 + L1M2 LINE L1 5154 5372 -771 2 933 280 294 35 12 chr1 45676526 45676612 -151518820 + RSINE1 SINE B4 78 165 0 2 933 332 273 10 10 chr1 45676612 45676712 -151518720 + (CATATA)n Simple_repeat Simple_repeat 5 104 0 2 933 678 288 90 27 chr1 45677143 45677511 -151517921 + Lx8 LINE L1 6684 7074 -399 2 933 7607 58 0 5 chr1 45677592 45678773 -151516659 - L1Md_F2 LINE L1 0 6582 5407 2 933 288 0 0 0 chr1 45679088 45679120 -151516312 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 933 679 278 68 28 chr1 45679122 45679444 -151515988 + L1MC3 LINE L1 7332 7666 -119 2 933 809 262 58 124 chr1 45679449 45679845 -151515587 + ORR1D1 LTR MaLR 5 374 0 2 933 312 333 45 45 chr1 45680745 45680825 -151514607 + MLT1I LTR MaLR 6 80 -331 2 933 216 0 0 0 chr1 45680825 45680849 -151514583 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 933 312 333 45 45 chr1 45680849 45680922 -151514510 + MLT1I LTR MaLR 81 158 -253 2 933 305 230 13 26 chr1 45681062 45681138 -151514294 + B4 SINE B4 10 84 -208 2 933 275 65 22 0 chr1 45681138 45681184 -151514248 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 2 933 580 352 59 15 chr1 45681185 45681387 -151514045 + B4A SINE B4 82 292 0 2 933 228 64 64 0 chr1 45681410 45681457 -151513975 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 933 767 218 27 49 chr1 45681473 45681656 -151513776 + B3A SINE B2 4 182 -16 2 933 2566 50 0 9 chr1 45681913 45682236 -151513196 + L1_Mus1 LINE L1 6248 6567 0 2 933 216 309 83 49 chr1 45682801 45683005 -151512427 - MIRc SINE MIR -53 215 5 2 933 276 322 108 27 chr1 45685439 45685624 -151509808 + MIR SINE MIR 3 202 -60 2 933 929 202 24 9 chr1 45685746 45685956 -151509476 + B3 SINE B2 1 213 -3 2 933 7670 42 11 5 chr1 45686592 45687714 -151507718 - L1Md_F3 LINE L1 -2 6582 5455 2 933 8652 1 0 0 chr1 45687726 45688893 -151506539 - L1Md_A LINE L1 0 6582 5416 2 933 596 273 62 56 chr1 45689017 45689374 -151506058 - RLTR10D LTR ERVK 0 359 1 2 933 1450 164 18 25 chr1 45689374 45689656 -151505776 - IAP-d-int LTR ERVK 0 6542 6263 2 933 3966 286 50 57 chr1 45689719 45691136 -151504296 - IAP-d-int LTR ERVK -452 6090 4616 2 933 216 302 118 36 chr1 45691136 45691246 -151504186 - B4 SINE B4 -169 123 5 2 933 3966 286 50 57 chr1 45691246 45692107 -151503325 - IAP-d-int LTR ERVK -452 4615 3718 2 933 681 315 19 30 chr1 45692189 45692559 -151502873 - IAP-d-int LTR ERVK -2848 3694 3329 2 933 4253 257 61 33 chr1 45692548 45694057 -151501375 - IAP-d-int LTR ERVK -4953 1589 39 2 933 773 28 0 0 chr1 45694065 45694171 -151501261 + L1Md_T LINE L1 6475 6580 -2 2 933 718 287 50 55 chr1 45694241 45694602 -151500830 - RLTR10D LTR ERVK 0 359 1 2 933 6938 29 0 4 chr1 45695298 45696120 -151499312 - L1Md_A LINE L1 0 6582 5764 2 933 13583 81 17 1 chr1 45696449 45699123 -151496309 - L1_Mus1 LINE L1 0 6567 3869 2 933 878 160 187 0 chr1 45699285 45699472 -151495960 - URR1A DNA MER1_type 0 226 5 2 933 1758 176 25 9 chr1 45699639 45699955 -151495477 + ORR1A4 LTR MaLR 1 321 -8 2 933 236 303 60 15 chr1 45700005 45700050 -151495382 + MER73 LTR ERVL 383 430 -214 2 933 405 39 0 0 chr1 45700050 45700101 -151495331 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 933 236 303 60 15 chr1 45700101 45700122 -151495310 + MER73 LTR ERVL 431 451 -193 2 933 263 314 68 74 chr1 45700415 45700563 -151494869 - RLTR42-int LTR ERVK -3727 1795 1649 2 933 496 261 9 0 chr1 45700659 45700774 -151494658 + PB1D9 SINE Alu 1 116 -4 2 933 180 0 0 0 chr1 45701760 45701780 -151493652 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 933 1224 287 95 54 chr1 45701932 45702263 -151493169 + RLTR26 LTR ERVK 5 377 -265 2 933 2474 95 34 20 chr1 45702263 45702617 -151492815 + RLTR10D LTR ERVK 1 359 0 2 933 1224 293 118 61 chr1 45702617 45702696 -151492736 + RLTR26 LTR ERVK 378 465 -177 2 933 186 43 0 0 chr1 45702696 45702719 -151492713 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 933 1224 293 118 61 chr1 45702719 45702888 -151492544 + RLTR26 LTR ERVK 466 638 -4 2 933 3312 153 37 28 chr1 45702913 45703586 -151491846 + Lx9 LINE L1 5184 5834 -1810 2 933 455 337 58 46 chr1 45703646 45703820 -151491612 + MLT1A0 LTR MaLR 184 359 -6 2 933 240 200 0 0 chr1 45705292 45705347 -151490085 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 2 933 548 230 0 0 chr1 45705355 45705455 -151489977 - B1_Mus1 SINE Alu -31 117 18 2 933 354 242 0 139 chr1 45705369 45705484 -151489948 - MT2B LTR ERVL -344 257 159 2 933 630 200 125 0 chr1 45705480 45705600 -151489832 + MTD LTR MaLR 200 334 -85 2 933 5684 80 3 1 chr1 45705758 45706512 -151488920 + L1_Mus2 LINE L1 5812 6566 0 2 933 1365 291 55 29 chr1 45706524 45707034 -151488398 - Lx8 LINE L1 -782 6691 6169 2 933 1280 47 35 0 chr1 45707044 45707213 -151488219 - L1Md_F3 LINE L1 -15 6569 6395 2 933 492 18 0 0 chr1 45707415 45707472 -151487960 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 933 522 0 0 0 chr1 45707504 45707562 -151487870 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 933 252 244 33 0 chr1 45707565 45707655 -151487777 - Lx8 LINE L1 -12 5868 5776 2 933 6248 136 25 13 chr1 45707671 45708719 -151486713 - Lx3C LINE L1 -7 6969 5910 3 933 4730 161 50 15 chr1 45708720 45710074 -151485358 - L1VL4 LINE L1 -1657 1902 510 3 933 34 79 0 0 chr1 45710556 45710632 -151484800 + AT_rich Low_complexity Low_complexity 1 76 0 3 933 448 239 216 31 chr1 45710943 45711202 -151484230 + RLTR11A LTR ERVK 2 300 -227 3 933 33930 42 0 3 chr1 45711202 45716321 -151479111 + L1Md_T LINE L1 387 5589 -297 3 933 8441 35 0 0 chr1 45716321 45717317 -151478115 + L1Md_T LINE L1 5590 6585 0 3 933 1507 220 14 77 chr1 45717329 45717743 -151477689 + RLTR11A LTR ERVK 141 528 0 3 933 3476 23 2 0 chr1 45718150 45718545 -151476887 + MTA_Mm LTR MaLR 1 396 0 3 933 3317 99 4 10 chr1 45718875 45719373 -151476059 - L1Md_F2 LINE L1 -10 6572 6078 3 933 2366 70 14 8 chr1 45719370 45719795 -151475637 - L1Md_F2 LINE L1 -144 6423 5763 3 933 23 54 0 0 chr1 45719859 45719896 -151475536 + AT_rich Low_complexity Low_complexity 1 37 0 3 933 31 44 0 0 chr1 45720150 45720195 -151475237 + AT_rich Low_complexity Low_complexity 1 45 0 3 933 16652 189 41 11 chr1 45721291 45723332 -151472100 + L1VL4 LINE L1 357 2583 -3303 3 933 531 0 0 0 chr1 45723332 45723391 -151472041 + (TAA)n Simple_repeat Simple_repeat 2 60 0 3 933 16652 170 45 6 chr1 45723391 45725310 -151470122 + L1VL4 LINE L1 2584 4628 -1258 3 933 34 65 0 0 chr1 45725534 45725596 -151469836 + AT_rich Low_complexity Low_complexity 1 62 0 3 933 1429 175 333 1 chr1 45725707 45725817 -151469615 - Lx9 LINE L1 -15 7629 7484 3 933 1582 52 0 0 chr1 45725817 45726010 -151469422 - B2_Mm1t SINE B2 0 193 1 3 933 1429 192 36 10 chr1 45726010 45726306 -151469126 - Lx9 LINE L1 -161 7483 7180 3 933 948 111 107 32 chr1 45726350 45726537 -151468895 - Lx2 LINE L1 -22 6975 6775 3 933 696 127 45 0 chr1 45726535 45726645 -151468787 - Lx2 LINE L1 -352 6645 6531 3 933 748 149 136 7 chr1 45726639 45726794 -151468638 + Lx4B LINE L1 6880 7054 -4 3 933 396 291 43 52 chr1 45727126 45727336 -151468096 - Lx9 LINE L1 -215 7429 7222 3 933 4817 102 19 0 chr1 45727335 45728019 -151467413 + Lx LINE L1 5601 6297 -357 3 933 1276 132 33 0 chr1 45728014 45728227 -151467205 + Lx2 LINE L1 6770 6989 -8 3 933 1124 106 33 6 chr1 45728236 45728416 -151467016 + Lx3C LINE L1 5783 5967 -1009 3 933 207 0 0 0 chr1 45728453 45728476 -151466956 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 933 1342 81 32 0 chr1 45729145 45729330 -151466102 + B2_Mm2 SINE B2 1 191 -4 3 933 367 260 99 10 chr1 45729404 45729505 -151465927 + PB1D10 SINE Alu 6 115 -2 3 933 277 293 13 18 chr1 45729505 45729604 -151465828 + ID4 SINE ID 2 98 -54 3 933 189 0 0 0 chr1 45730277 45730298 -151465134 + (T)n Simple_repeat Simple_repeat 1 21 0 3 933 310 286 62 33 chr1 45730495 45730657 -151464775 + MIR3 SINE MIR 34 200 -76 3 933 658 220 220 0 chr1 45732033 45732210 -151463222 + B3 SINE B2 1 216 0 3 933 23 33 0 0 chr1 45733192 45733222 -151462210 + AT_rich Low_complexity Low_complexity 1 30 0 3 933 2605 43 9 3 chr1 45733235 45733560 -151461872 - L1Md_F3 LINE L1 -2 6582 6256 3 933 192 40 0 0 chr1 45734214 45734239 -151461193 + (ACATG)n Simple_repeat Simple_repeat 3 27 0 3 933 350 74 19 0 chr1 45734685 45734739 -151460693 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 933 6565 48 2 2 chr1 45734830 45735649 -151459783 - L1Md_F2 LINE L1 -2 6580 5762 3 933 243 0 0 0 chr1 45735847 45735874 -151459558 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 3 933 200 34 0 33 chr1 45736478 45736508 -151458924 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3 933 210 278 7 46 chr1 45738138 45738289 -151457143 + A-rich Low_complexity Low_complexity 2 146 0 3 933 342 186 102 0 chr1 45738332 45738450 -151456982 - Lx9 LINE L1 -1 7643 7514 3 933 225 94 0 0 chr1 45738455 45738487 -151456945 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 933 198 0 0 0 chr1 45738906 45738928 -151456504 + (ATG)n Simple_repeat Simple_repeat 2 23 0 3 933 206 222 0 0 chr1 45738930 45738966 -151456466 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 933 989 8 0 23 chr1 45740106 45740279 -151455153 + L1Md_T LINE L1 6454 6582 0 3 933 2283 185 4 43 chr1 45740297 45740784 -151454648 + Lx4A LINE L1 5977 6444 -614 3 933 578 150 22 43 chr1 45740785 45740924 -151454508 + Lx4A LINE L1 6921 7056 -2 3 933 378 0 0 0 chr1 45741085 45741127 -151454305 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 933 358 300 83 15 chr1 45741290 45741422 -151454010 + B1F1 SINE Alu 1 141 -8 3 933 25 75 0 0 chr1 45741573 45741626 -151453806 + AT_rich Low_complexity Low_complexity 1 53 0 3 933 2660 171 54 54 chr1 45741726 45742300 -151453132 - Lx4B LINE L1 -4 7054 6481 3 933 576 206 0 0 chr1 45742300 45742407 -151453025 - U6 snRNA snRNA 0 107 1 3 116 3993 122 63 1 chr1 45743512 45744214 -151451218 + Lx LINE L1 5782 6565 -1 3 934 765 134 30 0 chr1 45744219 45744353 -151451079 + L1_Mur2 LINE L1 1665 1802 -4078 3 934 6997 192 37 30 chr1 45744364 45745971 -151449461 + L1_Mur2 LINE L1 2067 3684 -2193 3 934 3104 54 7 31 chr1 45746268 45746689 -151448743 - RLTR10A LTR ERVK 0 411 1 3 934 764 128 0 16 chr1 45746852 45746979 -151448453 - RLTR25B LTR ERVK -582 446 322 3 934 1119 151 11 16 chr1 45747003 45747192 -151448240 - RLTR25B LTR ERVK -700 328 141 3 934 933 172 129 0 chr1 45747192 45747401 -151448031 - L1_Mur3 LINE L1 -683 5197 4962 3 934 233 250 86 54 chr1 45747401 45747494 -151447938 - L1_Mur3 LINE L1 -7389 339 244 3 934 703 132 171 16 chr1 45750653 45750776 -151444656 + B1_Mus2 SINE Alu 5 146 -1 3 934 200 167 0 20 chr1 45750824 45750873 -151444559 + GA-rich Low_complexity Low_complexity 2 49 0 3 934 455 260 23 16 chr1 45750886 45751015 -151444417 + L1_Mur3 LINE L1 686 815 -6897 3 934 225 83 0 0 chr1 45751080 45751116 -151444316 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 934 478 182 74 55 chr1 45751237 45751400 -151444032 - L1_Mur3 LINE L1 -6694 1018 853 3 934 180 0 0 0 chr1 45751434 45751454 -151443978 + (A)n Simple_repeat Simple_repeat 1 20 0 3 934 227 306 87 20 chr1 45751652 45751802 -151443630 - L1_Mur3 LINE L1 -7534 178 19 3 934 443 287 97 24 chr1 45751788 45751995 -151443437 - L1_Mur3 LINE L1 -6911 801 580 3 934 1878 214 33 37 chr1 45751979 45752134 -151443298 - L1_Rod LINE L1 -3630 2217 2068 3 934 1868 186 63 11 chr1 45752134 45752499 -151442933 + ORR1C2 LTR MaLR 1 384 0 3 934 1878 214 33 37 chr1 45752499 45752858 -151442574 - L1_Rod LINE L1 -3780 2067 1705 3 934 8475 32 1 2 chr1 45752921 45754106 -151441326 - L1Md_F2 LINE L1 -1 6581 5399 3 934 989 92 177 0 chr1 45754132 45754296 -151441136 - B2_Mm2 SINE B2 0 195 3 3 934 774 204 20 0 chr1 45754301 45754448 -151440984 - B1_Mur4 SINE Alu 0 150 1 3 934 1544 185 147 29 chr1 45754448 45754710 -151440722 - L1_Rod LINE L1 -4140 1707 1457 3 934 997 44 15 0 chr1 45754710 45754845 -151440587 + (TC)n Simple_repeat Simple_repeat 2 138 0 3 934 3702 220 60 22 chr1 45754845 45755760 -151439672 - L1_Rod LINE L1 -4391 1456 462 3 934 31 68 0 0 chr1 45755920 45755979 -151439453 + AT_rich Low_complexity Low_complexity 1 59 0 3 934 4090 189 42 39 chr1 45756005 45756820 -151438612 - Lx5 LINE L1 -3 7047 6231 3 934 459 351 69 69 chr1 45757131 45757583 -151437849 + Arthur1B DNA Tip100 512 963 -262 3 934 1087 328 55 40 chr1 45757599 45758374 -151437058 + L1MCb LINE L1 1 787 -5258 3 934 393 240 67 0 chr1 45758419 45758523 -151436909 + L1MCb LINE L1 1104 1214 -5537 3 934 386 317 64 11 chr1 45758554 45758742 -151436690 + L1MCb LINE L1 4962 5159 -1405 3 934 373 284 63 0 chr1 45758887 45758982 -151436450 + B1F1 SINE Alu 2 102 -47 3 934 1042 83 7 58 chr1 45759058 45759212 -151436220 + B1_Mus1 SINE Alu 3 148 0 3 934 243 140 0 0 chr1 45759221 45759271 -151436161 + (A)n Simple_repeat Simple_repeat 1 50 0 3 934 282 116 0 0 chr1 45759304 45759347 -151436085 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 934 227 175 48 0 chr1 45759347 45759405 -151436027 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 934 336 250 11 0 chr1 45759540 45759628 -151435804 + L1MCb LINE L1 5224 5312 -1252 3 934 23166 172 32 13 chr1 45760353 45763410 -151432022 + Lx2A LINE L1 854 3961 -1925 3 934 543 37 12 24 chr1 45763410 45763494 -151431938 + (TAAAA)n Simple_repeat Simple_repeat 5 87 0 3 934 23166 158 36 29 chr1 45763494 45765888 -151429544 + Lx2A LINE L1 3962 6430 -578 3 934 2566 98 159 0 chr1 45765888 45766347 -151429085 - RLTR47_MM LTR ERV1 0 532 1 3 934 7799 132 53 58 chr1 45766347 45766962 -151428470 + Lx2A LINE L1 6431 7007 -1 3 934 329 290 12 66 chr1 45767176 45767318 -151428114 + B1F SINE Alu 13 149 0 3 934 252 257 0 0 chr1 45767325 45767395 -151428037 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 3 934 219 36 0 0 chr1 45767489 45767517 -151427915 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 934 310 190 35 0 chr1 45767877 45767935 -151427497 - MTC LTR MaLR -361 60 1 3 934 3149 185 92 28 chr1 45767939 45767982 -151427450 + Lx9 LINE L1 6883 6925 -719 3 934 5253 52 1 1 chr1 45767982 45768634 -151426798 + L1Md_F2 LINE L1 5931 6582 0 3 934 3149 185 92 28 chr1 45768634 45769189 -151426243 + Lx9 LINE L1 6926 7477 -167 3 934 426 20 0 0 chr1 45769189 45769240 -151426192 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 934 3149 185 92 28 chr1 45769240 45769356 -151426076 + Lx9 LINE L1 7478 7644 0 3 934 238 200 20 0 chr1 45770047 45770097 -151425335 + B1F2 SINE Alu 11 61 -88 3 934 315 316 39 6 chr1 45770703 45770859 -151424573 - L1M2 LINE L1 -1118 5025 4865 3 934 1246 257 155 4 chr1 45771022 45771499 -151423933 + Lx6 LINE L1 641 1189 -6539 3 934 2001 96 3 0 chr1 45771484 45771796 -151423636 + MusHAL1 LINE L1 240 552 -2160 3 934 2160 189 28 32 chr1 45771785 45772250 -151423182 + Lx9 LINE L1 7012 7474 -170 3 934 696 222 55 12 chr1 45772264 45772428 -151423004 + Lx9 LINE L1 7052 7222 -422 3 934 3100 112 0 16 chr1 45772402 45772910 -151422522 + MusHAL1 LINE L1 538 1037 -1675 3 934 2337 168 11 17 chr1 45772922 45773388 -151422044 + L1_Mur1 LINE L1 4198 4660 -1226 3 934 634 148 0 0 chr1 45773384 45773492 -151421940 + Lx6 LINE L1 3957 4064 -1816 3 934 4156 108 158 1 chr1 45773497 45774185 -151421247 + L1_Mus3 LINE L1 5843 6638 0 3 934 1629 139 3 24 chr1 45774194 45774410 -151421022 + Lx6 LINE L1 4082 4296 -1584 3 934 3139 61 2 5 chr1 45774410 45774807 -151420625 - MTA_Mm LTR MaLR 0 396 1 3 934 1629 139 3 24 chr1 45774807 45774878 -151420554 + Lx6 LINE L1 4297 4363 -1517 3 934 3680 166 24 59 chr1 45774870 45775009 -151420423 + Lx6 LINE L1 5125 5272 -608 3 934 489 34 0 0 chr1 45775009 45775068 -151420364 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 934 3680 177 24 68 chr1 45775068 45775845 -151419587 + Lx6 LINE L1 5273 6019 -1031 3 934 243 0 0 0 chr1 45775847 45775874 -151419558 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 3 934 3888 225 22 9 chr1 45775938 45776713 -151418719 + Lx6 LINE L1 6413 7197 -263 3 934 1437 227 60 38 chr1 45776713 45777079 -151418353 - ORR1D1 LTR MaLR 0 374 1 3 934 660 220 28 0 chr1 45777086 45777227 -151418205 - B1_Mur1 SINE Alu 0 149 5 3 934 328 271 0 0 chr1 45777235 45777305 -151418127 + RSINE1 SINE B4 3 72 -93 4 934 189 107 0 0 chr1 45777349 45777377 -151418055 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 934 708 71 27 0 chr1 45777418 45777530 -151417902 + (GA)n Simple_repeat Simple_repeat 2 116 0 4 934 180 0 0 0 chr1 45779937 45779957 -151415475 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 934 691 234 72 7 chr1 45779982 45780120 -151415312 + B1_Mur2 SINE Alu 2 148 -1 4 934 207 0 0 0 chr1 45780137 45780160 -151415272 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 934 555 189 0 154 chr1 45780300 45780456 -151414976 + RLTR23 LTR ERV1 8 139 -291 4 934 399 329 78 31 chr1 45780487 45780744 -151414688 + RLTR23 LTR ERV1 113 381 -49 4 934 480 316 7 0 chr1 45783053 45783208 -151412224 + MERVK26-int LTR ERVK 3264 3419 -4261 4 934 387 0 0 0 chr1 45784315 45784358 -151411074 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 934 619 343 40 48 chr1 45784681 45784741 -151410691 + MERVK26-int LTR ERVK 4549 4608 -2311 4 934 2321 170 35 54 chr1 45784741 45785169 -151410263 + RLTR9B2 LTR ERVK 1 420 0 4 934 619 343 40 48 chr1 45785169 45785709 -151409723 + MERVK26-int LTR ERVK 4609 5144 -1775 4 934 213 94 0 0 chr1 45786082 45786114 -151409318 + (A)n Simple_repeat Simple_repeat 1 32 0 4 934 205 182 0 22 chr1 45786362 45786407 -151409025 + L2b LINE L2 3053 3096 -279 4 934 1293 159 18 35 chr1 45787028 45787256 -151408176 - RLTR23 LTR ERV1 -17 413 190 4 934 428 189 156 0 chr1 45787283 45787373 -151408059 - RLTR23 LTR ERV1 -326 104 1 4 934 1111 98 74 11 chr1 45787787 45787963 -151407469 + B2_Mm2 SINE B2 9 195 0 4 934 1403 326 76 69 chr1 45788226 45790745 -151404687 - MuRRS4-int LTR ERV1 -2378 5178 2997 4 934 282 256 22 11 chr1 45790799 45790908 -151404524 - MuRRS4-int LTR ERV1 -5936 1842 1746 4 934 2280 96 65 20 chr1 45790920 45791271 -151404161 + IAPLTR1_Mm LTR ERVK 1 367 0 4 934 8638 75 49 49 chr1 45791271 45792577 -151402855 + IAPEz-int LTR ERVK 8 1313 -5168 4 934 29497 20 1 0 chr1 45792576 45795842 -151399590 + IAPEz-int LTR ERVK 3210 6478 -3 4 934 2330 90 65 20 chr1 45795846 45796197 -151399235 + IAPLTR1_Mm LTR ERVK 1 367 0 4 934 740 339 27 30 chr1 45796200 45796701 -151398731 - MuRRS4-int LTR ERV1 -5941 1615 1058 4 934 684 233 38 54 chr1 45797558 45797744 -151397688 - RLTR23 LTR ERV1 -53 377 195 4 934 603 27 0 0 chr1 45798042 45798115 -151397317 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 934 300 107 400 0 chr1 45798269 45798344 -151397088 - RLTR23 LTR ERV1 -325 105 1 4 934 323 83 83 0 chr1 45798345 45798393 -151397039 + RLTR23 LTR ERV1 379 430 0 4 934 8675 137 11 8 chr1 45798697 45800883 -151394549 - Lx LINE L1 -4 6650 4462 4 934 383 43 0 0 chr1 45800873 45800919 -151394513 + L1_Mur2 LINE L1 4404 4449 -1428 4 934 378 0 0 0 chr1 45801622 45801664 -151393768 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 934 267 319 149 12 chr1 45802285 45802454 -151392978 - MIRb SINE MIR -66 202 6 4 934 3785 230 77 107 chr1 45802657 45804267 -151391165 - Lx7 LINE L1 -1687 6009 4438 4 934 2381 131 44 85 chr1 45804268 45804678 -151390754 - RLTR9C LTR ERVK 0 393 1 4 934 479 120 0 0 chr1 45804679 45804754 -151390678 - ETnERV2-int LTR ERVK -1 7405 7331 4 934 1243 184 22 2 chr1 45804966 45805204 -151390228 - ETnERV2-int LTR ERVK -981 6425 6222 4 934 3853 187 30 67 chr1 45805196 45806373 -151389059 - ETnERV2-int LTR ERVK -1703 3141 2356 4 934 3883 122 17 3 chr1 45806367 45806949 -151388483 - ETnERV2-int LTR ERVK -3376 4030 3441 4 934 638 188 0 25 chr1 45807200 45807320 -151388112 - MMETn-int LTR ERVK -2654 2190 2074 4 934 2550 89 49 8 chr1 45807320 45807706 -151387726 - RLTR13D1 LTR ERVK -156 650 249 4 934 675 156 5 51 chr1 45807706 45807910 -151387522 - MMETn-int LTR ERVK -2768 2076 1946 4 934 574 300 48 29 chr1 45807928 45808134 -151387298 - Lx8 LINE L1 -132 7341 7132 4 934 1026 171 27 123 chr1 45808369 45808583 -151386849 - Lx7 LINE L1 0 7696 7494 4 934 1189 58 0 7 chr1 45808583 45808722 -151386710 + B1_Mm SINE Alu 1 138 -9 4 934 207 0 0 0 chr1 45808722 45808745 -151386687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 934 1026 171 27 123 chr1 45808745 45808822 -151386610 - Lx7 LINE L1 -203 7493 7433 4 934 1269 244 74 84 chr1 45808820 45808897 -151386535 - Lx7 LINE L1 -7033 695 628 4 934 1082 98 0 0 chr1 45808897 45809030 -151386402 + B1_Mm SINE Alu 2 134 -13 4 934 369 0 0 0 chr1 45809030 45809071 -151386361 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 934 1269 244 74 84 chr1 45809071 45809385 -151386047 - Lx7 LINE L1 -7101 627 308 4 934 553 360 32 57 chr1 45809863 45810143 -151385289 + B4A SINE B4 20 292 0 4 934 1296 126 39 0 chr1 45810249 45810431 -151385001 + B2_Mm2 SINE B2 5 193 -2 4 934 23 0 0 0 chr1 45810863 45810886 -151384546 + AT_rich Low_complexity Low_complexity 1 23 0 4 934 785 268 5 26 chr1 45810893 45811088 -151384344 + B3A SINE B2 2 192 -6 4 934 647 285 41 48 chr1 45811112 45811403 -151384029 + Lx8 LINE L1 7185 7473 0 4 934 1422 178 91 28 chr1 45811642 45812022 -151383410 - RMER16 LTR ERVK 0 533 1 4 934 5089 156 114 15 chr1 45813688 45814539 -151380893 + RLTR25A LTR ERVK 1 899 -204 4 934 306 0 0 0 chr1 45814539 45814573 -151380859 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 934 5089 156 114 15 chr1 45814573 45814723 -151380709 + RLTR25A LTR ERVK 900 1101 -2 4 934 567 249 157 22 chr1 45815279 45815464 -151379968 + MLT2B2 LTR ERVL 351 560 -2 4 934 1952 162 20 17 chr1 45815939 45816296 -151379136 + RLTR15 LTR ERVK 1 358 -1 4 934 306 0 0 0 chr1 45816665 45816699 -151378733 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 934 180 0 0 0 chr1 45816732 45816752 -151378680 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 934 252 0 0 0 chr1 45816779 45816807 -151378625 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 934 195 42 0 0 chr1 45816834 45816858 -151378574 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 934 798 280 5 10 chr1 45817139 45817334 -151378098 + B3 SINE B2 20 213 -3 4 934 253 202 171 9 chr1 45818649 45818754 -151376678 - RMER12 LTR ERVK -478 844 723 4 934 755 90 0 0 chr1 45819626 45819726 -151375706 + B1_Mus1 SINE Alu 1 100 -48 4 934 282 87 0 0 chr1 45819815 45819861 -151375571 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 4 934 270 0 0 0 chr1 45821373 45821403 -151374029 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 934 417 39 0 0 chr1 45821403 45821453 -151373979 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 934 225 237 0 0 chr1 45821481 45821540 -151373892 + (CATG)n Simple_repeat Simple_repeat 4 62 0 4 934 222 327 18 0 chr1 45821685 45821740 -151373692 - ID2 SINE ID -11 72 17 4 934 241 299 72 24 chr1 45821744 45821850 -151373582 - PB1D10 SINE Alu -3 124 5 4 934 308 313 29 72 chr1 45821934 45822072 -151373360 + B1F SINE Alu 13 144 -5 4 934 259 292 139 0 chr1 45822083 45822155 -151373277 + ID4_ SINE ID 2 83 0 4 934 782 241 58 14 chr1 45824566 45824789 -151370643 + Lx7 LINE L1 7097 7329 -367 4 934 296 14 96 27 chr1 45824854 45824927 -151370505 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 4 934 21 0 0 0 chr1 45827114 45827135 -151368297 + AT_rich Low_complexity Low_complexity 1 21 0 4 934 224 62 0 0 chr1 45827138 45827170 -151368262 - PB1 SINE Alu -55 72 41 4 934 2857 250 93 32 chr1 45827709 45828557 -151366875 - ORR1C1-int LTR MaLR -470 900 1 4 934 702 171 8 16 chr1 45828562 45828687 -151366745 - ORR1C1 LTR MaLR -5 373 250 4 934 1623 94 0 0 chr1 45828693 45828916 -151366516 - MT2B2 LTR ERVL -361 223 1 4 934 500 176 104 0 chr1 45828916 45829039 -151366393 + ORR1A3-int LTR MaLR 1823 1958 -5 4 934 422 212 0 0 chr1 45829650 45829735 -151365697 + B2_Mm2 SINE B2 3 87 -108 4 934 309 143 24 146 chr1 45829878 45829960 -151365472 - MMVL30-int LTR ERV1 -2333 1365 1294 4 934 268 319 76 89 chr1 45830223 45830618 -151364814 + MuRRS4-int LTR ERV1 1318 1707 -3356 4 934 1912 341 52 27 chr1 45830714 45832382 -151363050 + RLTR4_MM-int LTR ERV1 3575 5309 -2297 4 934 360 302 14 8 chr1 45832537 45832690 -151362742 + RLTR4_MM-int LTR ERV1 5381 5587 -2014 4 934 400 293 44 35 chr1 45833540 45833886 -151361546 + RLTR6-int LTR ERV1 7341 7649 -129 4 934 2260 123 6 0 chr1 45834249 45834574 -151360858 - ORR1A2 LTR MaLR 0 327 1 4 934 1604 159 0 4 chr1 45834832 45835110 -151360322 - MERVK26-int LTR ERVK -1397 5522 5246 4 934 671 137 120 0 chr1 45835099 45835216 -151360216 - MERVK26-int LTR ERVK -3624 3295 3165 4 934 472 216 115 18 chr1 45836014 45836127 -151359305 + RLTR47_MM LTR ERV1 391 514 -18 4 934 2074 144 59 8 chr1 45836127 45836484 -151358948 - MERVK26-int LTR ERVK -4220 2699 2325 4 934 3810 73 8 2 chr1 45836484 45837002 -151358430 - MTA_Mm-int LTR MaLR -577 521 1 4 934 3273 41 8 0 chr1 45837002 45837395 -151358037 - MTA_Mm LTR MaLR 0 396 1 4 934 3959 183 121 22 chr1 45838094 45838941 -151356491 - Lx7 LINE L1 0 7696 6758 4 934 792 195 88 101 chr1 45838941 45839169 -151356263 + URR1A DNA MER1_type 1 225 -1 4 934 3959 183 121 22 chr1 45839169 45839299 -151356133 - Lx7 LINE L1 -939 6757 6623 4 934 1411 134 22 0 chr1 45839309 45839578 -151355854 + MYSERV16_I-int LTR ERVK 1959 2233 -93 4 934 671 263 118 62 chr1 45839641 45839913 -151355519 + RLTR20D LTR ERVK 1 287 -281 4 934 643 227 6 49 chr1 45839888 45840050 -151355382 + RLTR20D LTR ERVK 411 565 -13 4 934 1124 177 106 0 chr1 45840053 45840279 -151355153 - Lx7 LINE L1 -1078 6618 6369 4 934 345 274 125 44 chr1 45840728 45841232 -151354200 - L1MC5 LINE L1 -379 7582 7038 4 934 323 247 0 0 chr1 45841384 45841465 -151353967 + Lx9 LINE L1 6694 6774 -870 4 934 574 265 42 103 chr1 45841926 45842237 -151353195 - RMER10A LTR ERVL -21 421 130 4 934 34457 34 3 21 chr1 45842793 45848046 -151347386 + L1Md_F2 LINE L1 440 5586 -297 4 934 7891 52 2 23 chr1 45848046 45849061 -151346371 + L1Md_F2 LINE L1 5587 6580 -2 4 934 26 50 0 0 chr1 45849118 45849158 -151346274 + AT_rich Low_complexity Low_complexity 1 40 0 4 934 1150 49 21 0 chr1 45849194 45849337 -151346095 - B1_Mm SINE Alu -1 146 1 4 934 3406 83 126 15 chr1 45849875 45850399 -151345033 + MT2B2 LTR ERVL 3 584 0 4 934 324 127 0 0 chr1 45850481 45850536 -151344896 + (GGA)n Simple_repeat Simple_repeat 3 57 0 4 934 504 0 0 0 chr1 45851031 45851087 -151344345 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 934 2586 56 28 11 chr1 45851332 45851691 -151343741 + L1Md_F2 LINE L1 6217 6581 -1 4 934 731 244 183 8 chr1 45853050 45853218 -151342214 + ORR1D1 LTR MaLR 30 223 -151 4 934 615 27 0 0 chr1 45853218 45853291 -151342141 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 934 279 0 0 0 chr1 45853291 45853321 -151342111 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 934 731 244 183 8 chr1 45853321 45853391 -151342041 + ORR1D1 LTR MaLR 224 309 -65 4 934 1122 263 73 84 chr1 45853842 45854211 -151341221 - ORR1D1 LTR MaLR -9 365 1 4 934 252 236 37 20 chr1 45854295 45854393 -151341039 - ID4_ SINE ID -50 102 1 4 934 300 281 93 36 chr1 45854425 45854565 -151340867 - B1F1 SINE Alu -1 148 1 4 934 200 140 23 23 chr1 45854619 45854663 -151340769 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 934 390 21 0 0 chr1 45855458 45855505 -151339927 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 934 1610 26 0 20 chr1 45855535 45855732 -151339700 - B2_Mm2 SINE B2 0 195 3 4 934 621 193 41 24 chr1 45859665 45859835 -151335597 + RCHARR1 DNA MER1_type 725 897 -77 4 934 490 258 193 0 chr1 45859900 45860133 -151335299 - B4A SINE B4 -12 280 3 4 934 501 193 29 186 chr1 45860235 45860407 -151335025 - B1_Mur4 SINE Alu -5 145 1 4 934 350 260 0 0 chr1 45860526 45860603 -151334829 + B3 SINE B2 1 77 -139 4 934 348 269 108 20 chr1 45861894 45862042 -151333390 + L1ME2 LINE L1 5938 6098 -66 4 934 1225 238 98 18 chr1 45862587 45862973 -151332459 - MTD LTR MaLR 0 419 3 4 934 191 167 28 0 chr1 45863035 45863071 -151332361 - L2c LINE L2 -247 3140 3104 5 934 848 19 28 0 chr1 45863980 45864086 -151331346 + BC1_Mm scRNA scRNA 2 110 -42 5 934 189 0 0 0 chr1 45864299 45864320 -151331112 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 934 370 213 98 51 chr1 45864320 45864483 -151330949 + Lx7 LINE L1 7494 7628 -68 5 934 384 22 0 0 chr1 45864612 45864657 -151330775 + (TTTTC)n Simple_repeat Simple_repeat 4 48 0 5 934 12758 86 31 20 chr1 45864734 45867327 -151328105 - L1VL2 LINE L1 -632 2983 364 5 934 408 240 13 39 chr1 45868052 45868208 -151327224 - L1M2 LINE L1 -837 5463 5312 5 934 200 35 35 0 chr1 45868210 45868239 -151327193 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 934 1286 66 0 6 chr1 45868246 45868413 -151327019 - B2_Mm2 SINE B2 -28 167 2 5 934 278 238 0 0 chr1 45868415 45868495 -151326937 - L1M2 LINE L1 -846 5297 5218 5 934 411 241 105 6 chr1 45868523 45868719 -151326713 + L1MA6 LINE L1 6065 6299 -1 5 934 544 250 123 12 chr1 45869486 45869648 -151325784 + B3A SINE B2 1 180 -18 5 934 718 98 0 0 chr1 45870606 45870708 -151324724 - B1_Mus2 SINE Alu 0 147 46 5 934 1034 38 0 8 chr1 45870707 45870839 -151324593 + B1_Mus2 SINE Alu 17 147 0 5 934 698 176 37 22 chr1 45871939 45872073 -151323359 - B1_Mur3 SINE Alu 0 149 14 5 934 3510 111 158 17 chr1 45872111 45872763 -151322669 + RMER6A LTR ERVK 1 744 -12 5 934 225 153 97 48 chr1 45872771 45872833 -151322599 - MIRm SINE MIR -110 166 102 5 934 1011 40 0 0 chr1 45873531 45873655 -151321777 + B1_Mm SINE Alu 3 126 -21 5 934 189 0 0 0 chr1 45873657 45873678 -151321754 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 935 287 261 165 93 chr1 45878233 45878302 -151317130 - L2a LINE L2 -35 3391 3317 5 935 1492 33 5 16 chr1 45878302 45878489 -151316943 - B2_Mm1a SINE B2 -7 186 2 5 935 287 261 165 93 chr1 45878489 45878656 -151316776 - L2a LINE L2 -110 3316 3138 5 935 263 372 0 0 chr1 45880499 45880577 -151314855 - PB1D10 SINE Alu -22 95 18 5 935 614 248 28 7 chr1 45880616 45880758 -151314674 - B3 SINE B2 -4 212 68 5 935 236 248 93 62 chr1 45881125 45881254 -151314178 - L1MB8 LINE L1 -9 6169 6037 5 935 1130 82 0 0 chr1 45881968 45882115 -151313317 + B1_Mus2 SINE Alu 1 147 0 5 935 563 303 55 33 chr1 45882126 45882307 -151313125 - B3A SINE B2 -12 186 2 5 935 381 277 27 13 chr1 45882309 45882459 -151312973 - L1MC1 LINE L1 -16 6317 6166 5 935 368 228 26 9 chr1 45882915 45883030 -151312402 + L1MA6 LINE L1 6184 6300 0 5 935 21 0 0 0 chr1 45883470 45883491 -151311941 + AT_rich Low_complexity Low_complexity 1 21 0 5 935 195 42 0 0 chr1 45883666 45883690 -151311742 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 5 935 333 0 0 0 chr1 45884873 45884910 -151310522 + (A)n Simple_repeat Simple_repeat 1 37 0 5 935 1068 181 62 83 chr1 45884941 45885280 -151310152 + ORR1B2 LTR MaLR 27 370 -24 5 935 792 266 27 5 chr1 45885594 45885779 -151309653 + B3 SINE B2 1 189 -27 5 935 221 308 0 15 chr1 45885803 45885869 -151309563 - MIR SINE MIR -62 146 82 5 935 2636 164 94 2 chr1 45886183 45886661 -151308771 + RMER19B LTR ERVK 1 522 -380 5 935 488 234 186 0 chr1 45886768 45886913 -151308519 - MTD LTR MaLR -247 172 1 5 935 27 0 0 0 chr1 45887108 45887135 -151308297 + AT_rich Low_complexity Low_complexity 1 27 0 5 935 676 299 81 94 chr1 45887233 45887400 -151308032 + LTR68 LTR ERV1 6 142 -598 5 935 270 0 0 0 chr1 45887400 45887430 -151308002 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 935 676 299 81 94 chr1 45887430 45887668 -151307764 + LTR68 LTR ERV1 143 405 -335 5 935 818 228 11 48 chr1 45887757 45887946 -151307486 + RMER13A LTR ERVK 679 860 0 5 935 368 306 115 29 chr1 45887946 45888155 -151307277 + L1M4c LINE L1 1532 1758 -4626 5 935 1218 21 14 0 chr1 45888238 45888382 -151307050 + B1_Mm SINE Alu 2 147 0 5 935 558 278 92 66 chr1 45888387 45889054 -151306378 + L1_Rod LINE L1 2075 2758 -3089 5 935 195 42 0 0 chr1 45889757 45889781 -151305651 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 935 378 246 67 67 chr1 45889784 45889919 -151305513 - B1F SINE Alu -14 135 1 5 935 195 69 0 0 chr1 45891024 45891053 -151304379 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 5 935 460 267 143 68 chr1 45891227 45891520 -151303912 + Lx8 LINE L1 7155 7469 -4 5 935 986 85 46 0 chr1 45891541 45891671 -151303761 + B1_Mm SINE Alu 2 137 -10 5 935 328 52 52 0 chr1 45891671 45891729 -151303703 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 5 935 718 256 0 0 chr1 45891735 45891872 -151303560 + B1_Mur4 SINE Alu 1 137 -13 5 935 988 233 14 0 chr1 45891923 45892133 -151303299 + B3 SINE B2 1 213 -3 5 935 582 41 0 0 chr1 45892989 45893062 -151302370 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 935 239 54 27 0 chr1 45893261 45893298 -151302134 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 935 1221 42 0 0 chr1 45893300 45893443 -151301989 - B1_Mus2 SINE Alu -4 143 1 5 935 1173 40 9 26 chr1 45893726 45893957 -151301475 + (TG)n Simple_repeat Simple_repeat 1 226 0 5 935 578 234 8 53 chr1 45894084 45894215 -151301217 + B1_Mur2 SINE Alu 19 143 -6 5 935 216 196 39 0 chr1 45894218 45894269 -151301163 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 5 935 450 0 0 0 chr1 45894463 45894513 -151300919 + (A)n Simple_repeat Simple_repeat 1 50 0 5 935 227 195 0 0 chr1 45894649 45894690 -151300742 - MLT1L LTR MaLR -449 161 121 5 935 287 130 0 18 chr1 45895002 45895057 -151300375 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 935 37 52 0 0 chr1 45895090 45895148 -151300284 + AT_rich Low_complexity Low_complexity 1 58 0 5 935 180 77 0 0 chr1 45895512 45895538 -151299894 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 935 544 344 114 25 chr1 45895581 45896036 -151299396 + MLT1F LTR MaLR 2 528 -41 5 935 752 280 6 0 chr1 45896909 45897066 -151298366 + B3 SINE B2 2 159 -57 5 935 185 94 0 30 chr1 45897072 45897105 -151298327 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 5 935 898 206 51 6 chr1 45897294 45897470 -151297962 + ORR1A3 LTR MaLR 79 262 -64 5 935 2343 160 50 23 chr1 45897480 45897965 -151297467 + RMER1C Other Other 841 1338 -4 5 935 236 77 0 25 chr1 45897969 45898009 -151297423 + (TTATA)n Simple_repeat Simple_repeat 4 42 0 5 935 26 0 0 0 chr1 45898147 45898173 -151297259 + AT_rich Low_complexity Low_complexity 1 26 0 5 935 22 56 0 0 chr1 45898995 45899031 -151296401 + AT_rich Low_complexity Low_complexity 1 36 0 5 935 23 0 0 0 chr1 45899142 45899165 -151296267 + AT_rich Low_complexity Low_complexity 1 23 0 5 935 1704 179 192 36 chr1 45899405 45899825 -151295607 - RLTR19A LTR ERVK -10 486 1 5 935 273 261 0 0 chr1 45900258 45900323 -151295109 + B1F SINE Alu 83 147 -2 5 935 841 252 4 25 chr1 45900326 45900570 -151294862 + L1_Rod LINE L1 5475 5713 -134 5 935 1132 240 4 139 chr1 45900568 45900821 -151294611 + L1_Mur3 LINE L1 278 471 -7241 5 935 297 0 0 0 chr1 45900821 45900854 -151294578 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 935 3088 195 47 18 chr1 45900854 45901748 -151293684 + L1_Mur3 LINE L1 229 1202 -6510 5 935 1071 265 62 104 chr1 45901774 45902245 -151293187 + RLTR12B LTR ERVK 47 497 -31 5 935 2206 130 19 14 chr1 45902370 45902557 -151292875 + L1_Mur3 LINE L1 1306 1497 -4383 5 935 3719 66 11 2 chr1 45902557 45903028 -151292404 + MT2C_Mm LTR ERVL 1 475 0 5 935 2206 130 19 14 chr1 45903028 45903268 -151292164 + L1_Mur3 LINE L1 1498 1735 -4145 5 935 4228 145 11 77 chr1 45903703 45903957 -151291475 + L1_Mur3 LINE L1 1731 1970 -3910 5 935 216 0 0 0 chr1 45903957 45903981 -151291451 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 935 4228 145 11 77 chr1 45903981 45904711 -151290721 + L1_Mur3 LINE L1 1971 2650 -3230 5 935 5419 156 39 14 chr1 45904711 45905819 -151289613 - L1_Mur3 LINE L1 -1586 4294 3159 5 935 1685 237 106 52 chr1 45905819 45906284 -151289148 + RMER6D LTR ERVK 1 487 -233 5 935 2232 173 17 155 chr1 45906284 45906298 -151289134 + RLTR19C LTR ERVK 1 14 -492 5 935 203 0 37 0 chr1 45906298 45906325 -151289107 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 935 2232 173 17 155 chr1 45906325 45906636 -151288796 + RLTR19C LTR ERVK 15 324 -182 5 935 1315 103 16 11 chr1 45906636 45906823 -151288609 - B2_Mm2 SINE B2 -7 188 1 5 935 2232 173 17 155 chr1 45906823 45906869 -151288563 + RLTR19C LTR ERVK 325 348 -158 5 935 1145 82 0 0 chr1 45906869 45907016 -151288416 + B1_Mus1 SINE Alu 2 148 0 5 935 2232 173 17 155 chr1 45907016 45907229 -151288203 + RLTR19C LTR ERVK 349 506 0 5 935 1685 237 106 52 chr1 45907229 45907341 -151288091 + RMER6D LTR ERVK 488 608 -112 5 935 1437 116 35 9 chr1 45907339 45907566 -151287866 - RMER6C LTR ERVK -399 291 59 5 935 947 208 14 78 chr1 45907550 45907837 -151287595 + RMER6D LTR ERVK 299 576 -114 5 935 1985 301 33 21 chr1 45907903 45908623 -151286809 + Lx8 LINE L1 6131 6859 -614 5 935 277 370 0 0 chr1 45908685 45908785 -151286647 + Lx8 LINE L1 7144 7243 -230 5 935 495 311 113 45 chr1 45908885 45909151 -151286281 + B4A SINE B4 3 286 -6 5 935 205 105 17 50 chr1 45909345 45909405 -151286027 + T-rich Low_complexity Low_complexity 1 58 0 5 935 853 29 0 0 chr1 45909414 45909518 -151285914 - B1_Mm SINE Alu -9 138 35 5 935 180 0 0 0 chr1 45910133 45910153 -151285279 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 935 1151 62 0 7 chr1 45910153 45910290 -151285142 - B1_Mus1 SINE Alu -10 138 2 5 935 21 0 0 0 chr1 45910949 45910970 -151284462 + AT_rich Low_complexity Low_complexity 1 21 0 5 935 294 307 52 17 chr1 45910993 45911109 -151284323 + PB1D7 SINE Alu 1 120 0 5 935 4849 63 23 0 chr1 45911497 45912117 -151283315 + L1_Mus1 LINE L1 5933 6566 -1 5 935 238 217 159 0 chr1 45912209 45912278 -151283154 - ID2 SINE ID 0 83 4 5 935 22 35 0 0 chr1 45912555 45912584 -151282848 + AT_rich Low_complexity Low_complexity 1 29 0 5 935 288 0 0 0 chr1 45912824 45912856 -151282576 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 935 195 129 0 0 chr1 45913243 45913274 -151282158 + (TTG)n Simple_repeat Simple_repeat 3 33 0 6 935 1077 95 0 0 chr1 45913679 45913826 -151281606 + B1_Mus2 SINE Alu 1 147 0 6 935 195 69 0 0 chr1 45915352 45915381 -151280051 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 935 877 141 35 21 chr1 45915382 45915527 -151279905 - B1_Mus2 SINE Alu 0 147 1 6 935 382 264 54 54 chr1 45915610 45915722 -151279710 + B1F1 SINE Alu 1 112 -5 6 935 25 0 0 0 chr1 45915931 45915956 -151279476 + AT_rich Low_complexity Low_complexity 1 25 0 6 935 403 214 19 28 chr1 45917761 45917867 -151277565 - B3 SINE B2 0 216 112 6 935 321 296 154 46 chr1 45918870 45919065 -151276367 - CYRA11_Mm Unknown Y-chromosome -230 387 172 6 935 800 162 7 14 chr1 45918922 45919066 -151276366 + URR1B DNA MER1_type 83 225 0 6 935 236 372 23 0 chr1 45919584 45919670 -151275762 - ID SINE ID -136 88 1 6 935 368 45 0 0 chr1 45919681 45919725 -151275707 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 6 935 708 119 0 0 chr1 45919725 45919834 -151275598 + (TC)n Simple_repeat Simple_repeat 1 109 0 6 935 967 167 42 16 chr1 45919834 45920023 -151275409 - B2_Mm2 SINE B2 -1 194 1 6 935 273 250 0 15 chr1 45920177 45920242 -151275190 - PB1D10 SINE Alu -3 114 51 6 935 263 241 103 0 chr1 45923196 45923283 -151272149 - MamRep434 DNA TcMar -174 252 157 6 935 309 51 0 0 chr1 45923530 45923569 -151271863 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 935 189 339 163 39 chr1 45924411 45924540 -151270892 - MIRb SINE MIR -102 166 22 6 935 288 236 247 0 chr1 45924542 45924631 -151270801 - PB1D7 SINE Alu -2 118 8 6 935 312 327 19 9 chr1 45924930 45925038 -151270394 - L3 LINE CR1 -137 4352 4244 6 935 191 244 128 47 chr1 45926396 45926482 -151268950 + MIR3 SINE MIR 110 202 -6 6 935 364 331 44 19 chr1 45926745 45926905 -151268527 - MER5B DNA MER1_type -5 173 10 6 935 447 106 0 0 chr1 45927476 45927542 -151267890 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 935 275 333 119 0 chr1 45927762 45927888 -151267544 + Arthur1B DNA Tip100 4 144 -1081 6 935 1226 230 196 42 chr1 45928126 45928697 -151266735 + Lx7 LINE L1 7038 7696 0 6 935 218 217 14 0 chr1 45928956 45929025 -151266407 + CT-rich Low_complexity Low_complexity 1 70 0 6 935 669 191 46 0 chr1 45930847 45930978 -151264454 + B1_Mur3 SINE Alu 6 142 -7 6 935 263 26 51 0 chr1 45930991 45931030 -151264402 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 6 935 400 240 48 39 chr1 45931068 45931172 -151264260 + RSINE1 SINE B4 32 136 -29 6 935 396 0 0 0 chr1 45931179 45931223 -151264209 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 935 191 287 0 41 chr1 45932220 45932322 -151263110 + MIRb SINE MIR 41 138 -130 6 935 1081 223 0 0 chr1 45932485 45932691 -151262741 + B3 SINE B2 1 206 -10 6 935 605 284 14 0 chr1 45934217 45934358 -151261074 + B3 SINE B2 73 215 -1 6 935 1421 236 68 11 chr1 45934988 45935339 -151260093 - RMER10A LTR ERVL -53 389 19 6 935 4913 161 50 96 chr1 45935801 45936300 -151259132 + L1_Mur3 LINE L1 3149 3655 -2225 6 935 1088 124 0 6 chr1 45936300 45936479 -151258953 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 935 4913 161 50 96 chr1 45936479 45937343 -151258089 + L1_Mur3 LINE L1 3656 4449 -1431 6 935 2618 226 78 20 chr1 45937333 45938015 -151257417 + Lx6 LINE L1 6739 7459 -1 6 935 614 257 7 14 chr1 45938026 45938172 -151257260 + B1_Mur1 SINE Alu 5 149 0 6 935 222 329 26 26 chr1 45939469 45939547 -151255885 - L2a LINE L2 -1 3425 3348 6 935 3906 175 15 18 chr1 45939627 45940365 -151255067 - Lx LINE L1 -1 6653 5918 6 935 3594 178 26 14 chr1 45941021 45941718 -151253714 + Lx2B LINE L1 6283 6987 -13 6 935 21 0 0 0 chr1 45941718 45941739 -151253693 + AT_rich Low_complexity Low_complexity 1 21 0 6 935 187 333 149 27 chr1 45941909 45942057 -151253375 + L2 LINE L2 1687 1852 -1567 6 935 228 270 54 43 chr1 45942099 45942192 -151253240 + L2 LINE L2 1944 2037 -1382 6 935 2804 73 13 3 chr1 45942199 45942585 -151252847 - L1_Mus3 LINE L1 -143 6495 6106 6 935 294 291 44 75 chr1 45942671 45942831 -151252601 + Lx7 LINE L1 7524 7678 -18 6 935 1170 75 0 0 chr1 45942839 45942986 -151252446 + B1_Mus2 SINE Alu 1 147 0 6 935 39 22 0 0 chr1 45943000 45943046 -151252386 + AT_rich Low_complexity Low_complexity 1 46 0 6 935 290 161 71 47 chr1 45943047 45943132 -151252300 - MT2A LTR ERVL -445 88 2 6 935 377 346 42 33 chr1 45943642 45943857 -151251575 + MIRb SINE MIR 6 222 -46 6 935 334 312 34 61 chr1 45944257 45944404 -151251028 - HAL1 LINE L1 -86 2421 2279 6 935 243 0 0 0 chr1 45945451 45945478 -151249954 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 935 332 208 78 19 chr1 45946460 45946563 -151248869 - RLTR19-int LTR ERVK -4547 1590 1482 6 935 215 369 8 0 chr1 45946604 45946726 -151248706 + (CCA)n Simple_repeat Simple_repeat 1 123 0 6 935 837 203 0 0 chr1 45947535 45947712 -151247720 + CT-rich Low_complexity Low_complexity 2 178 0 6 935 287 251 3 7 chr1 45948339 45948424 -151247008 - MLT1C LTR MaLR -56 411 256 6 935 697 293 62 39 chr1 45948474 45948733 -151246699 - MLT1C LTR MaLR -199 268 4 6 935 216 0 0 0 chr1 45949828 45949852 -151245580 + (T)n Simple_repeat Simple_repeat 1 24 0 6 935 472 329 21 14 chr1 45949852 45949994 -151245438 - RSINE1 SINE B4 -22 143 1 6 935 464 158 80 35 chr1 45950624 45950749 -151244683 - L1MB7 LINE L1 -4 6175 6049 6 935 564 254 8 0 chr1 45950800 45950918 -151244514 - PB1D9 SINE Alu 0 120 2 6 935 321 326 27 68 chr1 45951830 45951978 -151243454 + RSINE1 SINE B4 2 143 -22 6 935 252 0 0 0 chr1 45952102 45952130 -151243302 + (A)n Simple_repeat Simple_repeat 1 28 0 6 935 765 250 91 39 chr1 45952243 45952626 -151242806 + L1MB3 LINE L1 5728 6130 -53 6 935 865 211 214 13 chr1 45952756 45953064 -151242368 - ORR1D2 LTR MaLR 0 370 1 6 935 181 412 12 0 chr1 45953437 45953517 -151241915 - MIR SINE MIR -169 93 13 6 935 744 217 0 0 chr1 45953958 45954096 -151241336 + B1_Mur1 SINE Alu 1 138 -11 6 935 744 128 0 0 chr1 45954096 45954252 -151241180 + (GA)n Simple_repeat Simple_repeat 1 156 0 6 935 208 159 0 55 chr1 45954267 45954340 -151241092 + (CAGAGA)n Simple_repeat Simple_repeat 6 74 0 6 935 28 29 0 0 chr1 45954503 45954538 -151240894 + AT_rich Low_complexity Low_complexity 1 35 0 6 935 1236 96 0 0 chr1 45955328 45955505 -151239927 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 6 935 570 184 20 13 chr1 45955675 45955824 -151239608 + C-rich Low_complexity Low_complexity 3 152 0 6 935 496 249 62 78 chr1 45956050 45956372 -151239060 + Helitron1Nb_Mam RC Helitron 186 502 -614 6 935 264 190 154 16 chr1 45956552 45956675 -151238757 - Lx8 LINE L1 -32 7441 7302 6 935 293 294 33 0 chr1 45956686 45956778 -151238654 - Lx8 LINE L1 -213 7260 7166 6 935 249 108 0 0 chr1 45957044 45957081 -151238351 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 935 221 333 64 77 chr1 45957369 45957383 -151238049 + B4A SINE B4 78 147 -145 6 935 446 328 23 0 chr1 45957383 45957511 -151237921 + B1F SINE Alu 8 138 -11 6 935 221 333 64 77 chr1 45957511 45957525 -151237907 + B4A SINE B4 148 231 -61 6 935 229 258 61 0 chr1 45957843 45957909 -151237523 - HAL1 LINE L1 -1638 869 800 6 935 1111 96 7 0 chr1 45958177 45958323 -151237109 + B1_Mus2 SINE Alu 1 147 0 6 935 207 0 0 0 chr1 45958323 45958346 -151237086 + (A)n Simple_repeat Simple_repeat 1 23 0 6 935 1096 95 0 0 chr1 45958346 45958494 -151236938 + B1_Mus1 SINE Alu 1 148 0 6 935 180 300 210 0 chr1 45958884 45958984 -151236448 - MIRb SINE MIR -93 175 55 6 935 217 352 97 14 chr1 45959262 45959406 -151236026 + MIR SINE MIR 51 206 -56 6 935 471 222 192 37 chr1 45960230 45960417 -151235015 - B3 SINE B2 0 216 1 6 935 23 0 0 0 chr1 45960643 45960666 -151234766 + AT_rich Low_complexity Low_complexity 1 23 0 6 935 934 291 79 27 chr1 45963976 45963993 -151231439 + L1_Rod LINE L1 5291 5307 -540 6 935 1400 89 16 0 chr1 45963993 45964183 -151231249 + B2_Mm2 SINE B2 2 194 -1 6 935 934 291 79 27 chr1 45964183 45964685 -151230747 + L1_Rod LINE L1 5308 5837 -10 6 935 262 245 0 0 chr1 45967267 45967316 -151228116 + ID4 SINE ID 24 72 -11 6 935 282 29 0 0 chr1 45967316 45967351 -151228081 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 935 282 324 0 13 chr1 45967383 45967458 -151227974 + ID4 SINE ID 6 79 -4 6 935 396 59 0 0 chr1 45967498 45967549 -151227883 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 935 200 224 39 13 chr1 45969529 45969606 -151225826 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 935 1107 165 60 19 chr1 45969647 45969863 -151225569 - URR1A DNA MER1_type 0 226 2 6 935 579 355 135 35 chr1 45969870 45970269 -151225163 - L2 LINE L2 -799 2620 2191 6 935 1574 126 111 59 chr1 45970269 45970439 -151224993 + RMER17C LTR ERVK 1 205 -205 6 935 279 0 0 0 chr1 45970439 45970470 -151224962 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 935 1574 126 111 59 chr1 45970470 45970686 -151224746 + RMER17C LTR ERVK 206 407 -3 6 935 579 355 135 35 chr1 45970686 45970910 -151224522 - L2 LINE L2 -1229 2190 1935 6 935 201 309 270 18 chr1 45971029 45971303 -151224129 - L2 LINE L2 -1957 1462 1120 6 935 342 0 0 0 chr1 45971303 45971341 -151224091 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 935 201 39 0 0 chr1 45972853 45972879 -151222553 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 935 363 295 83 39 chr1 45973521 45973701 -151221731 - B3A SINE B2 -10 188 1 6 935 271 337 74 0 chr1 45974413 45974508 -151220924 + 7SK RNA RNA 1 102 -229 6 935 240 0 0 70 chr1 45974836 45974879 -151220553 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 935 258 318 0 0 chr1 45975621 45975684 -151219748 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 6 935 242 369 99 6 chr1 45976466 45976627 -151218805 + MIRc SINE MIR 69 244 -24 6 935 181 250 40 105 chr1 45978385 45978461 -151216971 + L3b LINE CR1 388 458 -24 7 935 240 327 0 186 chr1 45979056 45979180 -151216252 + MER20 DNA MER1_type 7 107 -112 7 935 736 156 0 0 chr1 45979282 45979391 -151216041 - URR1B DNA MER1_type -116 109 1 7 935 48 32 0 0 chr1 45979887 45979949 -151215483 + AT_rich Low_complexity Low_complexity 1 62 0 7 935 497 121 12 0 chr1 45979949 45980032 -151215400 + (TA)n Simple_repeat Simple_repeat 1 84 0 7 935 249 33 0 0 chr1 45982405 45982435 -151212997 + (CCG)n Simple_repeat Simple_repeat 3 32 0 7 935 291 113 0 0 chr1 45983696 45983749 -151211683 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 935 452 258 41 0 chr1 45984510 45984607 -151210825 - PB1D10 SINE Alu -7 110 10 7 935 380 182 78 6 chr1 45985217 45985383 -151210049 + (TA)n Simple_repeat Simple_repeat 1 178 0 7 935 252 0 0 0 chr1 45985424 45985452 -151209980 + (TAA)n Simple_repeat Simple_repeat 2 29 0 7 935 365 213 172 52 chr1 45987131 45987265 -151208167 - B1_Mur4 SINE Alu 0 150 1 7 935 202 89 33 67 chr1 45987390 45987450 -151207982 + (GTTTG)n Simple_repeat Simple_repeat 5 62 0 7 935 922 137 14 14 chr1 45987451 45987599 -151207833 - B1_Mus1 SINE Alu 0 148 1 7 935 21 36 0 0 chr1 45987926 45987954 -151207478 + AT_rich Low_complexity Low_complexity 1 28 0 7 935 291 164 0 0 chr1 45988085 45988146 -151207286 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 935 24 67 0 0 chr1 45990421 45990466 -151204966 + AT_rich Low_complexity Low_complexity 1 45 0 7 935 186 43 0 0 chr1 45991226 45991249 -151204183 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 935 40 59 0 0 chr1 45991261 45991329 -151204103 + AT_rich Low_complexity Low_complexity 1 68 0 7 935 832 214 100 16 chr1 45991329 45991519 -151203913 - B3 SINE B2 -5 211 6 7 935 322 194 0 0 chr1 45991613 45991675 -151203757 + MLT1C LTR MaLR 54 115 -352 7 935 1269 274 43 43 chr1 45991684 45992622 -151202810 + L1_Mur3 LINE L1 1 663 -7049 7 935 216 86 0 0 chr1 45992730 45992765 -151202667 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 935 252 250 0 0 chr1 45993316 45993376 -151202056 - RLTR42-int LTR ERVK -4359 1163 1104 7 935 315 0 0 0 chr1 45993378 45993413 -151202019 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 935 342 261 68 0 chr1 45993511 45993599 -151201833 + RLTR42-int LTR ERVK 1700 1793 -3729 7 935 271 201 47 107 chr1 45993585 45993735 -151201697 + RLTR19-int LTR ERVK 988 1128 -5009 7 935 2208 175 21 8 chr1 45993735 45994116 -151201316 + ORR1B1 LTR MaLR 1 386 -8 7 935 266 244 58 47 chr1 45994157 45994243 -151201189 + MTC-int LTR MaLR 466 552 -706 7 935 1149 259 104 88 chr1 45994237 45994681 -151200751 + MTC-int LTR MaLR 736 1186 -72 7 935 2361 209 94 87 chr1 45994894 45995903 -151199529 + RLTR19-int LTR ERVK 2175 3190 -2947 7 935 270 226 24 12 chr1 45995966 45996051 -151199381 + RLTR19-int LTR ERVK 3190 3275 -2862 7 935 827 207 4 86 chr1 45996069 45996312 -151199120 + RLTR19-int LTR ERVK 3475 3697 -2440 7 935 25 0 0 0 chr1 45996803 45996828 -151198604 + AT_rich Low_complexity Low_complexity 1 25 0 7 935 755 260 29 19 chr1 45998550 45998758 -151196674 - ID_B1 SINE B4 -14 210 1 7 935 241 186 0 33 chr1 45998765 45998826 -151196606 + C-rich Low_complexity Low_complexity 1 59 0 7 935 266 260 28 83 chr1 45999339 45999448 -151195984 + B1F SINE Alu 10 112 -37 7 935 366 257 41 81 chr1 45999351 45999474 -151195958 + ID_B1 SINE B4 104 221 -3 7 935 881 214 33 24 chr1 45999551 45999762 -151195670 - B3 SINE B2 -3 213 1 7 935 635 303 65 5 chr1 45999763 45999962 -151195470 - B4A SINE B4 -60 232 22 7 935 216 185 0 0 chr1 46000000 46000054 -151195378 + T-rich Low_complexity Low_complexity 1 54 0 1 935 1167 42 14 0 chr1 46000055 46000199 -151195233 - B1_Mus2 SINE Alu -1 146 1 2 935 5891 93 4 0 chr1 46000202 46001007 -151194425 - L1_Mus3 LINE L1 0 6638 5831 3 935 1554 161 13 13 chr1 46001007 46001309 -151194123 + L1_Mm LINE L1 4814 5115 -768 4 935 8164 17 0 0 chr1 46001297 46002281 -151193151 - L1Md_A LINE L1 -451 5432 4449 5 935 1299 25 0 0 chr1 46002280 46002437 -151192995 + L1Md_A LINE L1 5430 5586 -297 5 935 8376 36 0 1 chr1 46002437 46003434 -151191998 + L1Md_A LINE L1 5587 6582 0 5 935 4647 124 1 3 chr1 46003434 46004161 -151191271 + L1_Mm LINE L1 5100 5825 -58 4 935 21 0 0 0 chr1 46004599 46004620 -151190812 + AT_rich Low_complexity Low_complexity 1 21 0 6 935 212 0 0 35 chr1 46005122 46005151 -151190281 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 935 2408 161 81 8 chr1 46005504 46005975 -151189457 + RLTR28 LTR ERVL 1 505 -19 8 935 485 257 17 17 chr1 46006117 46006232 -151189200 + B4A SINE B4 4 118 -174 9 936 264 367 0 8 chr1 46006776 46006897 -151188535 + CT-rich Low_complexity Low_complexity 3 122 0 1 936 22 0 0 0 chr1 46007318 46007340 -151188092 + AT_rich Low_complexity Low_complexity 1 22 0 1 936 29994 91 13 8 chr1 46007449 46012786 -151182646 + L1Md_F2 LINE L1 276 5589 -294 1 936 6490 91 55 2 chr1 46012786 46013712 -151181720 + L1Md_F2 LINE L1 5597 6571 -11 1 936 16732 144 35 18 chr1 46014357 46018448 -151176984 + L1VL4 LINE L1 564 4736 -1147 1 936 406 94 35 0 chr1 46018448 46018533 -151176899 + (CAAAA)n Simple_repeat Simple_repeat 2 89 0 1 936 198 0 0 0 chr1 46018543 46018565 -151176867 + (CCTTG)n Simple_repeat Simple_repeat 2 23 0 1 936 564 219 18 84 chr1 46018584 46018603 -151176829 - ID_B1 SINE B4 -46 246 187 1 936 980 115 0 7 chr1 46018603 46018752 -151176680 - B1_Mus1 SINE Alu 0 148 1 1 936 564 219 18 84 chr1 46018752 46018792 -151176640 - ID_B1 SINE B4 -46 186 49 1 936 965 65 0 0 chr1 46018777 46018901 -151176531 - B1_Mus1 SINE Alu -10 138 15 1 936 940 96 7 7 chr1 46018902 46019049 -151176383 + (TTCC)n Simple_repeat Simple_repeat 3 149 0 1 936 5109 147 81 18 chr1 46019052 46019273 -151176159 - Lx LINE L1 -12 6642 6425 2 936 1442 172 224 16 chr1 46019273 46019639 -151175793 + BGLII_A LTR ERVK 4 445 0 2 936 6308 157 37 23 chr1 46019639 46021367 -151174065 - Lx LINE L1 -230 6424 4660 2 936 391 210 115 39 chr1 46021888 46021992 -151173440 + B1F2 SINE Alu 3 114 -6 2 936 207 69 0 0 chr1 46022038 46022067 -151173365 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 936 267 31 0 0 chr1 46022229 46022261 -151173171 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 936 410 321 28 34 chr1 46022300 46022504 -151172928 + B3A SINE B2 1 193 -2 2 936 795 216 75 28 chr1 46022880 46023094 -151172338 + MER2 DNA MER2_type 121 344 -1 2 936 258 167 0 0 chr1 46023177 46023237 -151172195 + T-rich Low_complexity Low_complexity 1 60 0 2 936 219 125 0 0 chr1 46023418 46023458 -151171974 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 936 885 238 34 29 chr1 46023461 46023669 -151171763 - B4A SINE B4 -2 290 82 2 936 1674 243 100 18 chr1 46023696 46024208 -151171224 - Lx9 LINE L1 -2 7642 7089 3 936 181 253 160 0 chr1 46025602 46025677 -151169755 + MIR SINE MIR 174 260 -2 3 936 230 250 62 0 chr1 46025901 46025965 -151169467 - MLT1K LTR MaLR -522 73 6 3 936 1082 43 58 0 chr1 46026567 46026706 -151168726 - B1_Mus2 SINE Alu 0 147 1 3 936 245 294 14 178 chr1 46026707 46026926 -151168506 - LTR37B LTR ERV1 -150 318 136 3 936 189 107 0 0 chr1 46027100 46027128 -151168304 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 3 936 226 143 0 0 chr1 46027171 46027206 -151168226 - U2 snRNA snRNA -153 35 1 3 936 1345 98 0 10 chr1 46027694 46027932 -151167500 + L1Md_F2 LINE L1 6357 6582 0 3 936 547 174 20 0 chr1 46027933 46028031 -151167401 + ORR1A4 LTR MaLR 148 247 -82 3 936 360 0 125 18 chr1 46029440 46029496 -151165936 + L1Md_A LINE L1 1 62 -6662 3 936 25644 14 0 0 chr1 46029490 46032592 -151162840 + L1Md_A LINE L1 2485 5586 -297 4 936 8700 20 1 0 chr1 46032592 46033622 -151161810 + L1Md_A LINE L1 5587 6582 0 4 936 261 91 45 15 chr1 46034677 46034744 -151160688 + A-rich Low_complexity Low_complexity 1 69 0 4 936 510 267 8 16 chr1 46035176 46035298 -151160134 - ID_B1 SINE B4 -2 222 102 4 936 290 244 110 0 chr1 46035230 46035312 -151160120 - PB1D7 SINE Alu -29 91 1 4 936 252 232 10 69 chr1 46035341 46035443 -151159989 - MER33 DNA MER1_type -110 214 119 4 936 22 0 0 0 chr1 46035638 46035660 -151159772 + AT_rich Low_complexity Low_complexity 1 22 0 4 936 379 292 128 28 chr1 46035750 46035891 -151159541 - RSINE1 SINE B4 -8 157 3 4 936 180 77 0 0 chr1 46036389 46036415 -151159017 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 936 460 291 31 16 chr1 46036415 46036544 -151158888 - B1F SINE Alu -10 139 9 4 936 5780 87 22 20 chr1 46036800 46038132 -151157300 + L1VL4 LINE L1 455 1787 -1772 4 936 21 36 0 0 chr1 46038192 46038220 -151157212 + AT_rich Low_complexity Low_complexity 1 28 0 5 936 606 207 20 88 chr1 46039051 46039199 -151156233 - B1_Mur3 SINE Alu 0 149 12 5 936 280 140 17 17 chr1 46039181 46039239 -151156193 - U2 snRNA snRNA -130 58 1 5 936 27 29 0 0 chr1 46039530 46039564 -151155868 + AT_rich Low_complexity Low_complexity 1 34 0 5 936 600 101 0 0 chr1 46039716 46039805 -151155627 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 5 936 3346 99 2 2 chr1 46040101 46040601 -151154831 - L1_Mus4 LINE L1 0 6636 6156 5 936 335 279 82 0 chr1 46040601 46040723 -151154709 + MTE2a LTR MaLR 4 135 -244 5 936 785 297 80 45 chr1 46041505 46041819 -151153613 - LTR40b LTR ERVL -15 447 123 5 936 289 234 32 0 chr1 46041851 46041946 -151153486 - L1M5 LINE L1 -497 5687 5587 5 936 237 281 61 0 chr1 46042478 46042592 -151152840 - L1ME1 LINE L1 -7 6172 6052 5 936 256 244 45 0 chr1 46042593 46042701 -151152731 - L1ME1 LINE L1 -335 5844 5728 5 936 244 360 0 0 chr1 46042754 46042843 -151152589 + MLT1E1A LTR MaLR 151 239 -441 6 936 509 297 112 48 chr1 46043267 46043536 -151151896 - B4A SINE B4 -5 287 2 6 936 358 305 127 99 chr1 46044593 46044877 -151150555 - B4A SINE B4 0 292 1 6 936 28 0 0 0 chr1 46044891 46044919 -151150513 + AT_rich Low_complexity Low_complexity 1 28 0 6 936 5445 50 7 1 chr1 46045162 46045848 -151149584 - L1Md_F2 LINE L1 0 6582 5893 6 936 21 36 0 0 chr1 46046755 46046783 -151148649 + AT_rich Low_complexity Low_complexity 1 28 0 6 936 207 309 78 88 chr1 46047538 46047730 -151147702 + L2c LINE L2 3170 3359 -28 6 936 219 188 0 0 chr1 46048235 46048283 -151147149 + A-rich Low_complexity Low_complexity 1 48 0 6 936 3289 64 9 7 chr1 46048515 46048973 -151146459 - L1Md_F2 LINE L1 -1650 4233 3775 6 936 9928 72 16 2 chr1 46048967 46050350 -151145082 + L1Md_F2 LINE L1 4185 5586 -297 6 936 7740 64 0 9 chr1 46050351 46051355 -151144077 + L1Md_F2 LINE L1 5588 6582 0 6 936 1133 219 201 6 chr1 46051453 46051766 -151143666 - ORR1D1 LTR MaLR 0 374 1 6 936 1620 140 90 0 chr1 46051766 46052044 -151143388 - ORR1D1-int LTR MaLR 0 1370 1068 6 936 4413 206 43 9 chr1 46052038 46052960 -151142472 - ORR1D1-int LTR MaLR -416 954 1 6 936 1151 237 115 18 chr1 46052960 46053133 -151142299 - ORR1D1 LTR MaLR 0 374 177 6 936 414 0 0 0 chr1 46053133 46053179 -151142253 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 936 1151 237 115 18 chr1 46053179 46053345 -151142087 - ORR1D1 LTR MaLR -198 176 3 6 936 759 204 42 0 chr1 46053382 46053524 -151141908 + MT2A LTR ERVL 1 148 -385 7 936 417 215 13 0 chr1 46053511 46053590 -151141842 + MT2A LTR ERVL 95 174 -359 7 936 508 182 182 0 chr1 46053589 46053698 -151141734 + URR1B DNA MER1_type 6 134 -91 7 936 2243 215 73 31 chr1 46053698 46054113 -151141319 + RLTR20A LTR ERVK 1 439 -102 7 936 183 42 0 0 chr1 46054113 46054137 -151141295 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 936 2243 215 73 31 chr1 46054137 46054240 -151141192 + RLTR20A LTR ERVK 440 541 0 7 936 670 94 0 0 chr1 46054240 46054336 -151141096 + URR1B DNA MER1_type 129 224 -1 7 936 434 241 171 8 chr1 46054337 46054454 -151140978 + MT2A LTR ERVL 163 298 -235 7 936 1225 131 11 0 chr1 46054655 46054846 -151140586 + RLTR33 LTR ERVK 1 193 -485 7 936 7537 84 3 1 chr1 46054846 46056231 -151139201 + L1_Mus4 LINE L1 5218 6606 -30 7 936 1989 165 229 14 chr1 46056231 46056668 -151138764 + RLTR33 LTR ERVK 148 678 0 7 936 652 208 119 5 chr1 46056668 46056846 -151138586 + MT2A LTR ERVL 334 533 0 7 936 764 206 0 7 chr1 46057237 46057379 -151138053 + B1_Mus2 SINE Alu 7 147 0 7 936 182 91 30 0 chr1 46057450 46057483 -151137949 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 936 190 324 81 23 chr1 46057652 46057826 -151137606 - L2a LINE L2 -4 3422 3239 7 936 386 350 0 27 chr1 46058397 46058544 -151136888 + B1F2 SINE Alu 6 148 -1 8 936 582 161 65 41 chr1 46058595 46058718 -151136714 + B1_Mur4 SINE Alu 12 137 -13 8 936 364 192 176 29 chr1 46059470 46059572 -151135860 - PB1D10 SINE Alu 0 117 1 8 936 1028 109 0 0 chr1 46059687 46059824 -151135608 + B1_Mus2 SINE Alu 1 137 -10 8 936 489 337 21 5 chr1 46060106 46060300 -151135132 + MER20 DNA MER1_type 2 198 -21 8 936 368 253 13 0 chr1 46060847 46060926 -151134506 + PB1D10 SINE Alu 8 87 -30 8 936 207 0 0 0 chr1 46060947 46060970 -151134462 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 936 419 311 0 0 chr1 46061413 46061519 -151133913 - PB1D10 SINE Alu -11 106 1 8 936 342 0 0 0 chr1 46062560 46062598 -151132834 + (TATG)n Simple_repeat Simple_repeat 2 39 0 8 936 1377 89 0 0 chr1 46062890 46063070 -151132362 - B2_Mm2 SINE B2 -14 181 2 8 936 1119 196 122 21 chr1 46064412 46064558 -151130874 + ORR1D1 LTR MaLR 1 170 -204 9 936 1179 34 0 0 chr1 46064558 46064706 -151130726 + (TCTCCC)n Simple_repeat Simple_repeat 4 151 0 9 936 1119 205 122 26 chr1 46064706 46064883 -151130549 + ORR1D1 LTR MaLR 151 315 -59 9 936 3189 133 40 2 chr1 46064884 46065382 -151130050 + Lx2A1 LINE L1 6469 6985 -23 9 936 2580 104 28 15 chr1 46065545 46065935 -151129497 - L1_Mus3 LINE L1 -1 6637 6243 9 936 5841 85 69 14 chr1 46066191 46067073 -151128359 - L1_Mur1 LINE L1 -2807 3079 2149 9 936 302 194 14 0 chr1 46067655 46067727 -151127705 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 936 4224 105 27 20 chr1 46069109 46069816 -151125616 - L1_Mur1 LINE L1 -3723 2163 1452 9 936 10376 157 106 7 chr1 46069816 46071227 -151124205 + L1_Mur2 LINE L1 3071 4534 -1343 9 936 1073 96 0 0 chr1 46071227 46071373 -151124059 + B1_Mm SINE Alu 1 146 -1 9 936 10376 157 106 7 chr1 46071373 46072117 -151123315 + L1_Mur2 LINE L1 4535 5437 -440 9 936 706 289 89 7 chr1 46072156 46072438 -151122994 - MTC LTR MaLR -99 322 18 9 936 698 201 7 14 chr1 46073266 46073412 -151122020 - B1_Mur4 SINE Alu 0 150 6 9 936 232 286 0 0 chr1 46073942 46074012 -151121420 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 936 305 300 73 9 chr1 46074777 46075001 -151120431 - L1MB1 LINE L1 -364 5936 5693 1 936 229 248 37 19 chr1 46083056 46083152 -151112280 + (CAGAGA)n Simple_repeat Simple_repeat 6 103 0 1 936 600 14 0 0 chr1 46083152 46083221 -151112211 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 936 229 248 37 19 chr1 46083221 46083231 -151112201 + (CAGAGA)n Simple_repeat Simple_repeat 2 11 0 1 936 21 0 0 0 chr1 46084351 46084372 -151111060 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 1179 75 0 18 chr1 46084376 46084539 -151110893 - L1_Mus1 LINE L1 0 6567 6408 1 936 235 35 0 0 chr1 46085828 46085857 -151109575 - U6 snRNA snRNA -78 29 1 1 936 230 179 0 0 chr1 46087693 46087732 -151107700 + L1M7 LINE L1 1611 1649 -4569 1 936 563 282 38 58 chr1 46088949 46089295 -151106137 - RLTR15 LTR ERVK -20 339 1 1 936 750 224 27 11 chr1 46089977 46090162 -151105270 - RMER6A LTR ERVK 0 756 569 1 936 1133 189 115 35 chr1 46090156 46090407 -151105025 - RMER6A LTR ERVK -387 369 92 1 936 5751 50 0 6 chr1 46090407 46091105 -151104327 + L1Md_F2 LINE L1 5877 6570 -12 1 936 1133 189 115 35 chr1 46091105 46091193 -151104239 - RMER6A LTR ERVK -665 91 4 1 936 968 265 93 26 chr1 46091235 46091622 -151103810 - MTD LTR MaLR 0 419 7 1 936 1369 158 127 30 chr1 46091786 46092086 -151103346 - ORR1A4 LTR MaLR 0 329 1 1 936 525 340 20 20 chr1 46092223 46092517 -151102915 + MTEa LTR MaLR 31 324 -55 1 936 195 246 0 0 chr1 46093341 46093398 -151102034 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 936 217 237 0 0 chr1 46094125 46094184 -151101248 + T-rich Low_complexity Low_complexity 1 59 0 1 936 1915 147 9 6 chr1 46094184 46094499 -151100933 - Lx3B LINE L1 0 6973 6658 1 936 13893 165 69 24 chr1 46094499 46095236 -151100196 - L1_Mur2 LINE L1 -501 5376 4648 1 936 2652 77 29 3 chr1 46095236 46095612 -151099820 + L1_Mus3 LINE L1 6253 6638 0 1 936 13893 165 69 24 chr1 46095612 46095625 -151099807 - L1_Mur2 LINE L1 -1230 4647 4624 1 936 230 0 33 0 chr1 46095625 46095655 -151099777 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 936 13893 165 69 24 chr1 46095655 46096347 -151099085 - L1_Mur2 LINE L1 -1254 4623 3817 1 936 231 36 0 0 chr1 46096347 46096375 -151099057 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 936 1210 54 0 0 chr1 46096376 46096523 -151098909 - B1_Mus2 SINE Alu 0 147 1 1 936 13893 165 69 24 chr1 46096523 46096834 -151098598 - L1_Mur2 LINE L1 -2061 3816 3485 1 936 233 29 29 0 chr1 46096834 46096868 -151098564 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 936 13893 165 69 24 chr1 46096868 46097782 -151097650 - L1_Mur2 LINE L1 -2393 3484 2577 1 936 3870 80 16 4 chr1 46097782 46098295 -151097137 + MURVY-LTR LTR ERV1 1 519 0 1 936 13893 165 69 24 chr1 46098295 46098460 -151096972 - L1_Mur2 LINE L1 -3301 2576 2409 1 936 216 86 0 0 chr1 46098469 46098504 -151096928 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 936 472 342 19 6 chr1 46098667 46098829 -151096603 + B3A SINE B2 5 168 -30 1 936 3328 98 15 0 chr1 46098967 46099434 -151095998 + L1_Mus3 LINE L1 5950 6423 -215 1 936 15015 143 194 18 chr1 46099426 46104317 -151091115 - L1_Mus4 LINE L1 -441 6195 356 1 936 1208 61 0 0 chr1 46104514 46104661 -151090771 - B1_Mus2 SINE Alu 0 147 1 1 936 180 292 27 14 chr1 46105816 46105889 -151089543 - MIR SINE MIR -25 237 164 1 936 15412 13 0 1 chr1 46106159 46107886 -151087546 + L1_Mm LINE L1 3861 5586 -297 1 936 8902 19 0 0 chr1 46107886 46108882 -151086550 + L1Md_A LINE L1 5587 6582 0 1 936 1082 137 71 0 chr1 46109390 46109572 -151085860 + B2_Mm2 SINE B2 1 195 0 1 936 197 132 26 0 chr1 46109578 46109616 -151085816 + GA-rich Low_complexity Low_complexity 4 42 0 1 936 3097 71 5 2 chr1 46110279 46110674 -151084758 - MTA_Mm LTR MaLR 0 396 1 1 936 213 65 0 0 chr1 46111286 46111317 -151084115 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 936 1137 95 0 7 chr1 46111320 46111469 -151083963 - B1_Mus1 SINE Alu 0 148 1 1 936 866 149 0 15 chr1 46112911 46113047 -151082385 - B1_Mus1 SINE Alu -9 139 6 1 936 191 74 35 53 chr1 46113994 46114051 -151081381 + T-rich Low_complexity Low_complexity 5 60 0 1 936 243 61 0 0 chr1 46114167 46114200 -151081232 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 936 392 244 0 0 chr1 46114419 46114501 -151080931 + PB1D10 SINE Alu 35 116 -1 1 936 1225 41 0 0 chr1 46114507 46114652 -151080780 + B1_Mm SINE Alu 3 147 0 1 936 257 192 24 60 chr1 46116193 46116276 -151079156 + MER21B LTR ERV1 382 461 -402 1 936 249 274 171 34 chr1 46116698 46116815 -151078617 + MER5A DNA MER1_type 33 188 -1 1 936 19465 101 26 17 chr1 46116852 46119090 -151076342 + L1_Mus3 LINE L1 2610 4905 -1733 1 936 235 136 62 92 chr1 46119090 46119155 -151076277 - RMER20A LTR ERVK -268 248 186 1 936 19465 101 26 17 chr1 46119155 46120840 -151074592 + L1_Mus3 LINE L1 4906 6635 -3 1 936 1082 93 0 0 chr1 46120981 46121120 -151074312 + B1_Mus2 SINE Alu 2 140 -7 1 936 558 29 0 0 chr1 46121124 46121192 -151074240 + (GAA)n Simple_repeat Simple_repeat 2 69 0 1 936 269 294 72 20 chr1 46121551 46121730 -151073702 + L1M4 LINE L1 4892 5073 -1067 1 936 969 179 26 10 chr1 46121737 46121929 -151073503 - B2_Mm2 SINE B2 0 195 1 1 936 683 269 0 15 chr1 46121964 46122096 -151073336 - RSINE1 SINE B4 -33 132 3 1 936 429 36 0 0 chr1 46122202 46122257 -151073175 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 1 936 318 316 74 15 chr1 46122349 46122484 -151072948 + L1M4 LINE L1 5483 5625 -549 1 936 2878 163 23 23 chr1 46122832 46123360 -151072072 + RLTR12B LTR ERVK 1 528 0 1 936 365 302 19 9 chr1 46123408 46123515 -151071917 + RLTR16 LTR ERVK 32 139 -366 1 936 360 242 49 37 chr1 46124082 46124207 -151071225 - B1F SINE Alu -12 137 22 1 936 220 301 107 0 chr1 46124117 46124220 -151071212 - ID_B1 SINE B4 -31 193 80 1 936 636 253 77 94 chr1 46124476 46124773 -151070659 + B4A SINE B4 1 292 0 1 936 228 304 27 89 chr1 46124966 46125078 -151070354 - ORR1E LTR MaLR -173 186 82 1 936 252 0 0 0 chr1 46125281 46125309 -151070123 + (T)n Simple_repeat Simple_repeat 1 28 0 1 936 249 108 0 0 chr1 46126460 46126497 -151068935 + (ATG)n Simple_repeat Simple_repeat 1 37 0 1 936 823 190 0 0 chr1 46126497 46126639 -151068793 - B1_Mur3 SINE Alu -6 143 2 1 936 33 0 0 0 chr1 46126640 46126673 -151068759 + AT_rich Low_complexity Low_complexity 1 33 0 1 936 729 251 84 0 chr1 46126675 46126854 -151068578 - B3 SINE B2 -17 199 6 1 936 475 306 9 18 chr1 46126985 46127095 -151068337 - PB1D10 SINE Alu -7 110 2 1 936 31394 78 9 48 chr1 46127904 46134327 -151061105 - L1Md_F2 LINE L1 -12 6570 419 1 936 388 206 136 10 chr1 46134410 46134513 -151060919 - RSINE1 SINE B4 -38 127 12 1 936 1161 245 122 71 chr1 46134550 46134649 -151060783 + MTD LTR MaLR 5 81 -338 1 936 640 118 17 0 chr1 46134649 46134768 -151060664 - L1_Mus3 LINE L1 -2 6636 6516 1 936 1161 245 122 71 chr1 46134768 46135063 -151060369 + MTD LTR MaLR 82 419 0 1 936 232 284 32 0 chr1 46135161 46135256 -151060176 - L1M2 LINE L1 -1830 4313 4216 1 936 229 368 73 22 chr1 46137088 46137295 -151058137 + L2b LINE L2 3202 3424 -2 1 937 36 40 0 0 chr1 46137625 46137675 -151057757 + AT_rich Low_complexity Low_complexity 1 50 0 1 937 308 322 61 52 chr1 46137677 46137890 -151057542 - MER33 DNA MER1_type -109 215 1 1 937 1942 249 40 31 chr1 46138378 46138900 -151056532 - RMER19C LTR ERVK 0 611 85 1 937 199 236 134 90 chr1 46139115 46139226 -151056206 + MIR3 SINE MIR 83 194 -14 1 937 425 293 93 11 chr1 46139423 46139606 -151055826 + L1M2 LINE L1 2769 2966 -3177 1 937 267 154 20 71 chr1 46139785 46139883 -151055549 + A-rich Low_complexity Low_complexity 3 95 0 1 937 328 308 8 8 chr1 46139889 46140007 -151055425 + L1M2 LINE L1 3288 3405 -2738 1 937 232 303 53 0 chr1 46140034 46140166 -151055266 + L1MA6 LINE L1 6031 6169 -131 1 937 3385 39 0 21 chr1 46140764 46141188 -151054244 + L1Md_F2 LINE L1 6168 6582 0 1 937 317 93 0 18 chr1 46141338 46141393 -151054039 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 937 846 0 0 0 chr1 46141396 46141490 -151053942 + (TTC)n Simple_repeat Simple_repeat 3 96 0 1 937 430 322 100 17 chr1 46141754 46141934 -151053498 + B4A SINE B4 1 195 -97 1 937 242 73 24 0 chr1 46143225 46143266 -151052166 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1 937 317 281 69 16 chr1 46143282 46143383 -151052049 - PB1D9 SINE Alu -16 104 3 1 937 266 333 181 0 chr1 46143658 46143763 -151051669 - PB1 SINE Alu -2 125 2 1 937 381 319 48 10 chr1 46145126 46145335 -151050097 - L1M5 LINE L1 -2479 3667 3451 1 937 279 0 0 0 chr1 46145335 46145366 -151050066 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 937 326 111 0 45 chr1 46145634 46145700 -151049732 + G-rich Low_complexity Low_complexity 2 64 0 1 937 439 211 3 71 chr1 46145843 46146128 -151049304 + G-rich Low_complexity Low_complexity 1 265 0 1 937 787 97 0 29 chr1 46146445 46146583 -151048849 + (GA)n Simple_repeat Simple_repeat 2 135 0 1 937 214 235 0 0 chr1 46146769 46146824 -151048608 + MIRc SINE MIR 99 157 -111 1 937 19275 17 0 0 chr1 46146831 46149838 -151045594 - L1Md_A LINE L1 0 6582 3576 1 937 19287 11 0 0 chr1 46150413 46153420 -151042012 - L1Md_A LINE L1 0 6582 3576 1 937 724 242 94 10 chr1 46155320 46155512 -151039920 + B3 SINE B2 3 210 -6 1 937 801 164 75 0 chr1 46155683 46155842 -151039590 - ORR1C2 LTR MaLR -213 171 1 1 937 302 266 21 11 chr1 46156852 46156947 -151038485 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 937 712 302 19 14 chr1 46157046 46157261 -151038171 + MER58A DNA MER1_type 9 224 0 1 937 18508 171 50 53 chr1 46157308 46163453 -151031979 - Lx4B LINE L1 -6 7044 890 1 937 566 82 0 12 chr1 46163626 46163712 -151031720 + (TCC)n Simple_repeat Simple_repeat 3 87 0 1 937 1060 115 0 0 chr1 46163713 46163861 -151031571 - B1_Mus1 SINE Alu 0 148 1 1 937 418 274 8 34 chr1 46164122 46164239 -151031193 - ID_B1 SINE B4 -11 213 100 2 937 403 298 53 8 chr1 46164239 46164254 -151031178 - B1F2 SINE Alu -11 138 1 2 937 8227 47 0 0 chr1 46164865 46165860 -151029572 + L1Md_T LINE L1 5587 6581 -1 2 937 360 64 0 0 chr1 46165879 46165926 -151029506 + (A)n Simple_repeat Simple_repeat 1 47 0 2 937 247 239 26 26 chr1 46166276 46166392 -151029040 + (TTTA)n Simple_repeat Simple_repeat 2 117 0 2 937 960 163 0 0 chr1 46166606 46166753 -151028679 + B1_Mur4 SINE Alu 1 147 -3 2 937 480 111 0 0 chr1 46167317 46167389 -151028043 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 937 452 111 12 0 chr1 46167394 46167475 -151027957 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 937 342 0 0 0 chr1 46167483 46167521 -151027911 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 937 1799 146 9 68 chr1 46167689 46168027 -151027405 - ORR1A4 LTR MaLR -8 321 4 2 937 1673 228 141 99 chr1 46168165 46168874 -151026558 - RLTR40 LTR ERVK -28 789 51 2 937 484 15 0 30 chr1 46169144 46169211 -151026221 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 2 937 254 274 16 0 chr1 46169551 46169613 -151025819 - Tigger5 DNA MER2_type -52 2354 2292 2 937 754 308 101 87 chr1 46169906 46170272 -151025160 + MTE2a LTR MaLR 3 373 -6 2 937 1104 142 35 10 chr1 46170516 46170712 -151024720 - Lx5 LINE L1 -138 6912 6728 2 937 8525 69 15 1 chr1 46170796 46172650 -151022782 - L1Md_F2 LINE L1 -1 6581 4700 2 937 378 250 0 0 chr1 46172731 46172811 -151022621 - BC1_Mm scRNA scRNA -71 81 2 2 937 847 153 18 0 chr1 46172847 46173010 -151022422 + CT-rich Low_complexity Low_complexity 3 168 0 2 937 498 283 104 11 chr1 46173178 46173360 -151022072 - B3 SINE B2 -6 210 12 2 937 35 24 0 0 chr1 46173417 46173459 -151021973 + AT_rich Low_complexity Low_complexity 1 42 0 2 937 1892 118 46 31 chr1 46174191 46174515 -151020917 + ORR1A4 LTR MaLR 1 329 0 2 937 3337 72 7 0 chr1 46174824 46175256 -151020176 + L1_Mus2 LINE L1 6132 6566 0 2 937 238 297 31 71 chr1 46175424 46175551 -151019881 + MLT1A1 LTR MaLR 1 122 -286 2 937 298 261 65 21 chr1 46175843 46175949 -151019483 + MTEb LTR MaLR 276 379 0 2 937 306 0 0 0 chr1 46176324 46176358 -151019074 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 937 27 106 0 0 chr1 46176953 46177057 -151018375 + AT_rich Low_complexity Low_complexity 1 104 0 2 937 196 235 62 124 chr1 46177372 46177469 -151017963 - MIRm SINE MIR -184 92 2 2 937 504 295 74 10 chr1 46177838 46178149 -151017283 - L1MB7 LINE L1 -16 6168 5838 2 937 497 186 31 0 chr1 46178150 46178247 -151017185 + MTD LTR MaLR 1 100 -319 2 937 232 249 166 11 chr1 46178274 46178558 -151016874 - L1M4 LINE L1 -3010 3136 2809 2 937 806 306 33 4 chr1 46178758 46178998 -151016434 - B4A SINE B4 -42 250 4 2 937 1222 137 68 41 chr1 46179025 46179245 -151016187 - URR1A DNA MER1_type 0 226 1 2 937 21 0 0 0 chr1 46181969 46181990 -151013442 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 206 367 43 92 chr1 46182074 46182281 -151013151 - L4 LINE RTE -373 1656 1460 2 937 324 264 53 35 chr1 46184270 46184384 -151011048 + PB1D10 SINE Alu 2 117 0 2 937 456 77 0 0 chr1 46184469 46184534 -151010898 + (ATGGTG)n Simple_repeat Simple_repeat 4 68 0 2 937 501 272 13 20 chr1 46184650 46184800 -151010632 - B1F SINE Alu 0 149 1 2 937 5202 181 88 45 chr1 46185488 46186715 -151008717 - RMER12 LTR ERVK -38 1810 1 2 937 795 189 21 32 chr1 46186762 46186948 -151008484 - B2_Mm2 SINE B2 -9 186 3 2 937 290 279 54 71 chr1 46187156 46187268 -151008164 - PB1D7 SINE Alu -7 113 4 2 937 22 80 0 0 chr1 46189265 46189315 -151006117 + AT_rich Low_complexity Low_complexity 1 50 0 2 937 351 260 164 0 chr1 46190143 46190247 -151005185 + B3A SINE B2 40 160 -38 2 937 27 0 0 0 chr1 46190738 46190765 -151004667 + AT_rich Low_complexity Low_complexity 1 27 0 2 937 504 258 0 0 chr1 46190974 46191141 -151004291 + (TG)n Simple_repeat Simple_repeat 2 168 0 2 937 198 0 0 0 chr1 46191977 46191999 -151003433 + (T)n Simple_repeat Simple_repeat 1 22 0 2 937 1165 69 0 0 chr1 46191999 46192144 -151003288 - B1_Mus2 SINE Alu 0 147 3 2 937 528 238 24 8 chr1 46192574 46192697 -151002735 - MLT1A1 LTR MaLR 0 408 284 2 937 21 0 0 0 chr1 46193655 46193676 -151001756 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 375 280 30 0 chr1 46194492 46194592 -151000840 + PB1D10 SINE Alu 3 105 -12 2 937 313 155 0 17 chr1 46195105 46195164 -151000268 - B1_Mm SINE Alu 0 147 90 2 937 555 269 182 36 chr1 46195786 46196175 -150999257 + L1MA8 LINE L1 5783 6228 -63 2 937 285 297 0 98 chr1 46197187 46197269 -150998163 - B3A SINE B2 -16 182 109 2 937 235 296 234 13 chr1 46198273 46198427 -150997005 + MIRc SINE MIR 48 235 -33 2 937 32341 82 17 2 chr1 46199567 46205687 -150989745 - L1Md_F2 LINE L1 -1 6581 371 2 937 1091 102 0 0 chr1 46205814 46205961 -150989471 - B1_Mus2 SINE Alu 0 147 1 2 937 323 123 35 17 chr1 46206336 46206394 -150989038 + B1_Mus1 SINE Alu 1 59 -89 2 937 232 214 28 28 chr1 46206394 46206405 -150989027 + B4A SINE B4 86 154 -138 2 937 660 137 20 0 chr1 46206446 46206548 -150988884 + B1_Mur3 SINE Alu 40 143 -6 2 937 26 0 0 0 chr1 46206690 46206716 -150988716 + AT_rich Low_complexity Low_complexity 1 26 0 2 937 324 161 92 46 chr1 46206739 46206804 -150988628 - B1_Mur1 SINE Alu -17 132 65 2 937 1992 174 122 112 chr1 46206806 46207518 -150987914 - RLTR45-int LTR ERVK -1854 5390 4672 2 937 15308 100 20 15 chr1 46207506 46209809 -150985623 - ETnERV2-int LTR ERVK -1644 5762 3448 2 937 353 87 0 0 chr1 46209809 46209855 -150985577 - RLTR9D LTR ERVK -357 46 1 2 937 368 280 118 12 chr1 46210057 46210303 -150985129 - L1MA6 LINE L1 -107 6193 5922 2 937 482 234 129 5 chr1 46210368 46210561 -150984871 - L1MA6 LINE L1 -559 5741 5525 2 937 342 266 167 14 chr1 46210595 46210809 -150984623 - L1MEg LINE L1 -4651 1827 1529 2 937 7108 87 4 6 chr1 46211217 46212921 -150982511 - L1_Mus2 LINE L1 0 6566 4866 2 937 551 156 0 0 chr1 46212919 46213015 -150982417 - L1_Mm LINE L1 -904 4979 4884 2 937 230 257 29 10 chr1 46213017 46213119 -150982313 - L1MEg LINE L1 -4263 1119 1016 2 937 2855 176 59 15 chr1 46213780 46214439 -150980993 - MYSERV16_I-int LTR ERVK -1714 612 1 2 937 31 0 0 0 chr1 46214695 46214726 -150980706 + AT_rich Low_complexity Low_complexity 1 31 0 2 937 1180 131 72 72 chr1 46215342 46215606 -150979826 + Lx3B LINE L1 6706 6969 -4 2 937 534 104 0 0 chr1 46215620 46215716 -150979716 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 937 1882 183 114 26 chr1 46215717 46215891 -150979541 - RLTR20B1 LTR ERVK -105 458 259 2 937 324 0 0 0 chr1 46215891 46215927 -150979505 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 937 1882 183 114 26 chr1 46215927 46216173 -150979259 - RLTR20B1 LTR ERVK -305 258 2 2 937 238 268 125 134 chr1 46217071 46217399 -150978033 - RLTR12B LTR ERVK -197 331 7 2 937 336 316 35 6 chr1 46218019 46218188 -150977244 + ERVL-B4-int LTR ERVL 4378 4551 -1163 2 937 334 289 0 19 chr1 46218617 46218779 -150976653 + C-rich Low_complexity Low_complexity 3 161 0 2 937 224 222 18 18 chr1 46218784 46218839 -150976593 + CT-rich Low_complexity Low_complexity 5 59 0 2 937 21 0 0 0 chr1 46219152 46219173 -150976259 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 337 239 0 50 chr1 46219433 46219552 -150975880 + L1MA4 LINE L1 5790 5902 -398 2 937 210 118 0 0 chr1 46219590 46219624 -150975808 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 937 1506 273 110 53 chr1 46219997 46220643 -150974789 - Tigger1 DNA MER2_type -247 2171 1489 2 937 251 372 81 0 chr1 46220703 46220789 -150974643 - B4 SINE B4 -4 288 196 2 937 590 290 12 55 chr1 46221106 46221270 -150974162 - B4A SINE B4 -98 194 38 2 937 1713 251 128 35 chr1 46221332 46221608 -150973824 - Tigger1 DNA MER2_type -994 1424 1142 2 937 3312 159 75 21 chr1 46221608 46221949 -150973483 + RMER6C LTR ERVK 1 337 -353 2 937 612 40 0 0 chr1 46221949 46222024 -150973408 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 937 3312 159 75 21 chr1 46222024 46222337 -150973095 + RMER6C LTR ERVK 338 690 0 2 937 1713 265 166 19 chr1 46222337 46223213 -150972219 - Tigger1 DNA MER2_type -1277 1141 67 2 937 274 258 81 20 chr1 46223311 46223410 -150972022 + L2a LINE L2 3316 3420 -6 2 937 468 0 0 0 chr1 46223891 46223943 -150971489 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 937 202 29 28 28 chr1 46224633 46224669 -150970763 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2 937 3255 59 2 23 chr1 46224776 46225209 -150970223 - L1_Mus1 LINE L1 0 6567 6144 2 937 5885 132 46 15 chr1 46225600 46226608 -150968824 - Lx LINE L1 -29 6625 5587 2 937 10987 93 5 7 chr1 46226610 46228280 -150967152 + L1Md_F2 LINE L1 3453 5118 -765 2 937 1840 96 57 7 chr1 46228287 46228570 -150966862 - RLTR27 LTR ERVK -12 297 1 2 937 3388 59 2 23 chr1 46228570 46228708 -150966724 + L1Md_F2 LINE L1 5113 5239 -644 2 937 385 0 45 30 chr1 46228708 46228775 -150966657 + (TAA)n Simple_repeat Simple_repeat 2 69 0 2 937 3388 59 2 23 chr1 46228775 46229120 -150966312 + L1Md_F2 LINE L1 5240 5585 -298 2 937 8289 40 1 0 chr1 46229120 46230112 -150965320 + L1Md_F2 LINE L1 5587 6579 -3 2 937 6622 102 9 2 chr1 46230112 46231382 -150964050 + L1_Mus2 LINE L1 5294 6654 0 2 937 530 230 78 16 chr1 46231399 46231527 -150963905 + B1F2 SINE Alu 7 142 -7 2 937 24 0 0 0 chr1 46231617 46231641 -150963791 + AT_rich Low_complexity Low_complexity 1 24 0 2 937 1561 224 69 3 chr1 46231666 46231825 -150963607 + MTD LTR MaLR 5 163 -256 2 937 468 0 0 0 chr1 46231825 46231877 -150963555 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 937 1561 224 69 3 chr1 46231877 46232106 -150963326 + MTD LTR MaLR 164 419 0 2 937 24 32 0 0 chr1 46232959 46232990 -150962442 + AT_rich Low_complexity Low_complexity 1 31 0 2 937 26 0 0 0 chr1 46233021 46233047 -150962385 + AT_rich Low_complexity Low_complexity 1 26 0 2 937 767 163 14 0 chr1 46233047 46233188 -150962244 + URR1A DNA MER1_type 84 226 0 2 937 742 259 92 28 chr1 46234409 46234720 -150960712 - MTEb LTR MaLR 0 379 1 3 937 2622 113 21 66 chr1 46235352 46235835 -150959597 + RMER6B LTR ERVK 1 461 0 3 937 4482 93 31 6 chr1 46235956 46236602 -150958830 - L1_Mus3 LINE L1 -3 6635 5974 3 937 468 0 0 0 chr1 46236656 46236708 -150958724 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 937 2846 221 152 38 chr1 46236903 46237726 -150957706 - Lx9 LINE L1 0 7644 6727 3 937 2194 89 53 20 chr1 46237726 46238081 -150957351 + IAPLTR1_Mm LTR ERVK 1 367 0 3 937 2846 221 152 38 chr1 46238081 46238249 -150957183 - Lx9 LINE L1 -918 6726 6540 3 937 300 337 71 15 chr1 46240274 46240470 -150954962 - Lx8 LINE L1 -132 7341 7135 3 937 926 289 24 3 chr1 46240464 46240506 -150954926 - Lx8 LINE L1 -465 7008 6967 3 937 450 0 0 0 chr1 46240506 46240556 -150954876 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 937 926 289 24 3 chr1 46240556 46240808 -150954624 - Lx8 LINE L1 -507 6966 6709 3 937 322 265 43 57 chr1 46242583 46242723 -150952709 - MLT1A1 LTR MaLR -3 405 268 3 937 283 226 9 19 chr1 46242923 46243031 -150952401 + GA-rich Low_complexity Low_complexity 1 107 0 3 937 222 91 0 0 chr1 46243027 46243060 -150952372 + (GGA)n Simple_repeat Simple_repeat 3 35 0 3 937 209 89 43 22 chr1 46243885 46243931 -150951501 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 937 1435 158 77 23 chr1 46244906 46245227 -150950205 + ORR1B2 LTR MaLR 33 374 0 3 937 342 0 0 0 chr1 46245564 46245602 -150949830 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 937 342 284 159 26 chr1 46246887 46247082 -150948350 - L1MEg LINE L1 -4840 1244 1024 3 937 351 0 0 0 chr1 46247274 46247313 -150948119 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 937 465 19 0 0 chr1 46247315 46247369 -150948063 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 937 228 35 0 0 chr1 46247622 46247651 -150947781 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 937 196 212 30 0 chr1 46248251 46248317 -150947115 + (TCCA)n Simple_repeat Simple_repeat 4 71 0 3 937 21 0 0 0 chr1 46248341 46248362 -150947070 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 13650 62 8 1 chr1 46248883 46251511 -150943921 + L1Md_F LINE L1 562 3206 -2677 3 937 276 74 0 12 chr1 46252882 46252939 -150942493 + L1_Mus2 LINE L1 6522 6565 -1 3 937 473 246 68 95 chr1 46253255 46253403 -150942029 + RSINE1 SINE B4 3 146 -19 3 937 744 22 0 0 chr1 46253685 46253775 -150941657 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 937 383 222 80 36 chr1 46253945 46254057 -150941375 + PB1D10 SINE Alu 1 117 0 3 937 849 150 0 0 chr1 46254103 46254250 -150941182 + (GGGA)n Simple_repeat Simple_repeat 4 150 0 3 937 604 262 37 56 chr1 46254533 46254747 -150940685 + B3 SINE B2 1 210 -6 3 937 201 200 22 0 chr1 46254877 46254922 -150940510 + L2c LINE L2 3029 3074 -313 3 937 434 306 17 86 chr1 46256696 46256871 -150938561 - RSINE1 SINE B4 0 165 3 3 937 219 88 0 0 chr1 46257206 46257240 -150938192 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 937 25 65 0 0 chr1 46257362 46257408 -150938024 + AT_rich Low_complexity Low_complexity 1 46 0 3 937 24 0 0 0 chr1 46257443 46257467 -150937965 + AT_rich Low_complexity Low_complexity 1 24 0 3 937 3627 120 106 36 chr1 46258585 46259286 -150936146 - RMER6A LTR ERVK -6 750 1 3 937 846 156 11 6 chr1 46260133 46260307 -150935125 + CT-rich Low_complexity Low_complexity 2 176 0 3 937 450 0 0 0 chr1 46260301 46260351 -150935081 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 937 21 71 0 0 chr1 46261373 46261415 -150934017 + AT_rich Low_complexity Low_complexity 1 42 0 3 937 232 291 75 48 chr1 46262436 46262559 -150932873 + B1F SINE Alu 16 136 -13 3 937 228 349 74 99 chr1 46262986 46263112 -150932320 - MLT1C LTR MaLR 0 467 344 3 937 1603 143 140 24 chr1 46263112 46263441 -150931991 - ORR1B2 LTR MaLR 0 367 1 3 937 228 349 74 99 chr1 46263441 46263597 -150931835 - MLT1C LTR MaLR -124 343 192 3 937 556 157 0 0 chr1 46263905 46263988 -150931444 - ORR1B2 LTR MaLR -216 151 69 3 937 363 193 0 0 chr1 46265023 46265106 -150930326 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 937 584 275 90 0 chr1 46265107 46265274 -150930158 - B3A SINE B2 -16 182 1 3 937 21 0 0 0 chr1 46265663 46265684 -150929748 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 227 294 94 35 chr1 46265684 46265786 -150929646 - Lx7 LINE L1 -19 7677 7572 3 937 2338 42 0 0 chr1 46265786 46266069 -150929363 + L1Md_A LINE L1 6297 6579 -3 3 937 227 294 94 35 chr1 46266069 46266167 -150929265 - Lx7 LINE L1 -125 7571 7465 3 937 192 77 0 0 chr1 46266167 46266193 -150929239 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 3 937 475 310 12 0 chr1 46266225 46266396 -150929036 - Lx7 LINE L1 -376 7320 7148 3 937 291 306 73 0 chr1 46267103 46267227 -150928205 + L1MC2 LINE L1 6017 6149 -195 3 937 420 271 17 8 chr1 46267576 46267674 -150927758 + MER58C DNA MER1_type 2 99 -116 3 937 279 0 0 0 chr1 46267674 46267705 -150927727 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 937 420 271 17 8 chr1 46267705 46267725 -150927707 + MER58C DNA MER1_type 100 119 -96 3 937 332 336 31 13 chr1 46267822 46268048 -150927384 - L1M4 LINE L1 -1720 4426 4197 3 938 303 342 100 12 chr1 46268727 46268887 -150926545 - LTR80B LTR ERVL -176 408 235 3 938 1154 215 5 0 chr1 46269438 46269661 -150925771 + URR1B DNA MER1_type 2 225 0 3 938 249 119 0 0 chr1 46269976 46270018 -150925414 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 938 23 54 0 0 chr1 46270098 46270135 -150925297 + AT_rich Low_complexity Low_complexity 1 37 0 3 938 382 246 21 9 chr1 46271461 46271580 -150923852 - B1_Mus1 SINE Alu 0 117 1 3 938 356 287 0 85 chr1 46271796 46271937 -150923495 - RMER10B LTR ERVL -34 364 236 3 938 306 211 0 0 chr1 46273264 46273316 -150922116 - ID SINE ID -144 80 29 3 938 263 303 30 0 chr1 46273273 46273339 -150922093 - BC1_Mm scRNA scRNA -82 70 3 3 938 317 329 78 46 chr1 46273470 46273623 -150921809 + B4A SINE B4 12 169 -123 3 938 2274 161 166 48 chr1 46274167 46274728 -150920704 - RMER20B LTR ERVK 0 627 1 3 938 255 300 0 41 chr1 46275110 46275183 -150920249 - ID4 SINE ID -3 80 11 3 938 473 225 2 11 chr1 46275216 46275331 -150920101 + B3A SINE B2 2 111 -84 3 938 22 0 0 0 chr1 46275373 46275395 -150920037 + AT_rich Low_complexity Low_complexity 1 22 0 3 938 27 87 0 0 chr1 46277927 46277996 -150917436 + AT_rich Low_complexity Low_complexity 1 69 0 3 938 456 307 74 54 chr1 46280213 46280361 -150915071 - RSINE1 SINE B4 -12 153 3 3 938 648 281 57 5 chr1 46280402 46280613 -150914819 + ID_B1 SINE B4 3 224 0 3 938 366 129 0 0 chr1 46280613 46280675 -150914757 + (A)n Simple_repeat Simple_repeat 1 62 0 3 938 581 120 26 53 chr1 46281294 46281408 -150914024 - PB1D9 SINE Alu -1 119 9 3 938 201 274 48 16 chr1 46281891 46281954 -150913478 - L3 LINE CR1 -3459 1030 966 3 938 24 0 0 0 chr1 46283276 46283300 -150912132 + AT_rich Low_complexity Low_complexity 1 24 0 3 938 577 302 43 0 chr1 46285646 46285808 -150909624 - MLT1A0 LTR MaLR -191 174 6 3 938 253 326 122 30 chr1 46286556 46286793 -150908639 + L2a LINE L2 3134 3392 -34 3 938 2430 74 65 0 chr1 46287072 46287397 -150908035 + ORR1A1 LTR MaLR 1 346 0 3 938 2045 99 0 16 chr1 46287397 46287714 -150907718 + ORR1A1-int LTR MaLR 1 312 -1480 3 938 2132 77 20 0 chr1 46287688 46287988 -150907444 + ORR1A1-int LTR MaLR 1487 1792 0 3 938 2444 71 65 0 chr1 46287988 46288313 -150907119 + ORR1A1 LTR MaLR 1 346 0 3 938 285 239 41 48 chr1 46288314 46288459 -150906973 + L1M4 LINE L1 5107 5250 -896 3 938 295 299 40 30 chr1 46288604 46288704 -150906728 - MLT1B LTR MaLR -217 173 73 3 938 3686 218 48 11 chr1 46289175 46290072 -150905360 - Lx9 LINE L1 -2 7642 6713 3 938 437 0 19 0 chr1 46292017 46292070 -150903362 + (CAGAA)n Simple_repeat Simple_repeat 4 57 0 3 938 3307 43 5 0 chr1 46292787 46293181 -150902251 - MTA_Mm LTR MaLR 0 396 1 3 938 484 255 292 44 chr1 46293895 46294121 -150901311 + B4 SINE B4 5 286 -6 3 938 1390 250 107 31 chr1 46295679 46296297 -150899135 - Lx9 LINE L1 0 7644 6980 3 938 21 0 0 0 chr1 46296932 46296953 -150898479 + AT_rich Low_complexity Low_complexity 1 21 0 3 938 241 317 0 0 chr1 46298148 46298230 -150897202 + (CCA)n Simple_repeat Simple_repeat 2 83 0 3 938 742 200 0 0 chr1 46298372 46298532 -150896900 + L1_Mus2 LINE L1 6407 6566 0 3 938 504 140 0 0 chr1 46298539 46298632 -150896800 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 3 938 333 217 14 0 chr1 46299564 46299633 -150895799 + ID4 SINE ID 4 73 -10 3 938 725 283 18 64 chr1 46299651 46299870 -150895562 + B4 SINE B4 2 210 -82 3 938 2771 163 24 57 chr1 46300899 46301440 -150893992 + RLTR11A2 LTR ERVK 5 527 0 3 938 420 290 25 82 chr1 46301462 46301620 -150893812 - RSINE1 SINE B4 -14 151 3 3 938 200 111 22 0 chr1 46301620 46301665 -150893767 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 938 2289 83 149 0 chr1 46302019 46302367 -150893065 - MTB LTR MaLR 0 400 1 3 938 4691 119 66 73 chr1 46302811 46302972 -150892460 - RMER17A2 LTR ERVK 0 906 746 3 938 204 40 0 0 chr1 46302972 46302997 -150892435 + (G)n Simple_repeat Simple_repeat 1 25 0 3 938 4691 119 66 73 chr1 46302997 46303324 -150892108 - RMER17A2 LTR ERVK -161 745 449 3 938 414 0 0 0 chr1 46303324 46303370 -150892062 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 938 4691 119 66 73 chr1 46303370 46303793 -150891639 - RMER17A2 LTR ERVK -458 448 4 3 938 4724 122 48 8 chr1 46303810 46304635 -150890797 - RMER17A-int LTR ERVK -30 1698 841 3 938 1959 75 56 30 chr1 46304638 46304941 -150890491 - RMER17A2 LTR ERVK -595 311 1 3 938 960 191 29 0 chr1 46305099 46305309 -150890123 - L1_Rod LINE L1 -12 5835 5620 3 938 433 268 238 0 chr1 46305314 46305545 -150889887 + Lx9 LINE L1 7145 7430 -214 3 938 608 46 0 22 chr1 46305597 46305686 -150889746 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 3 938 234 128 0 0 chr1 46307134 46307173 -150888259 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 938 555 90 0 0 chr1 46307918 46307996 -150887436 + (CACCG)n Simple_repeat Simple_repeat 2 79 0 3 938 328 332 152 17 chr1 46308381 46308617 -150886815 + MER74C LTR ERVL 64 331 -129 3 938 227 289 115 8 chr1 46308737 46308859 -150886573 + L1MC4 LINE L1 7337 7471 -571 3 938 344 169 13 0 chr1 46309055 46309132 -150886300 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 938 21 0 0 0 chr1 46309510 46309531 -150885901 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 866 234 122 117 chr1 46309549 46309917 -150885515 + MTE2a LTR MaLR 10 379 0 4 938 6682 103 6 3 chr1 46310538 46311946 -150883486 - L1_Mus2 LINE L1 0 6566 5156 4 938 1117 177 33 137 chr1 46311946 46312305 -150883127 - RLTRETN_Mm LTR ERVK 0 322 1 4 938 514 214 49 14 chr1 46312305 46312447 -150882985 - MMETn-int LTR ERVK 0 4844 4698 4 938 520 254 178 8 chr1 46312447 46312689 -150882743 - RLTR13D6 LTR ERVK -462 440 158 4 938 6367 131 9 4 chr1 46312689 46313637 -150881795 - ETnERV2-int LTR ERVK -198 7208 6256 4 938 247 25 50 0 chr1 46313637 46313677 -150881755 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 4 938 457 204 9 18 chr1 46313679 46313789 -150881643 - MMETn-int LTR ERVK -1250 3594 3486 4 938 5073 162 39 18 chr1 46313808 46315493 -150879939 - MMETn-int LTR ERVK -3321 4085 2356 4 938 2664 116 33 51 chr1 46315720 46316382 -150879050 - MMETn-int LTR ERVK -2657 2187 1729 4 938 5982 124 19 71 chr1 46316405 46317595 -150877837 - MMETn-int LTR ERVK -3714 1130 3 4 938 1025 157 63 140 chr1 46317599 46317688 -150877744 - RLTRETN_Mm LTR ERVK 0 322 235 4 938 500 0 17 0 chr1 46317688 46317748 -150877684 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 938 1025 157 63 140 chr1 46317748 46318007 -150877425 - RLTRETN_Mm LTR ERVK -88 234 1 4 938 5475 101 19 1 chr1 46318009 46318858 -150876574 - L1_Mm LINE L1 -724 5159 4296 4 938 24117 132 19 4 chr1 46318856 46323750 -150871682 + L1_Mus3 LINE L1 1673 6638 0 4 938 353 302 34 17 chr1 46323841 46323959 -150871473 - L2c LINE L2 -221 3166 3047 4 938 409 273 19 32 chr1 46324833 46324988 -150870444 + GA-rich Low_complexity Low_complexity 4 156 0 4 938 240 35 0 0 chr1 46324994 46325023 -150870409 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 938 696 194 13 53 chr1 46325734 46325886 -150869546 - B1_Mur4 SINE Alu -4 146 1 4 938 252 219 174 16 chr1 46326668 46326858 -150868574 - L1MA6 LINE L1 -10 6290 6071 4 938 234 0 0 0 chr1 46327391 46327417 -150868015 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4 938 1011 128 0 0 chr1 46327816 46327964 -150867468 + B1_Mus1 SINE Alu 1 148 0 4 938 948 141 0 23 chr1 46327971 46328191 -150867241 + GA-rich Low_complexity Low_complexity 1 214 0 4 938 809 156 17 30 chr1 46328233 46328676 -150866756 + GA-rich Low_complexity Low_complexity 1 437 0 4 938 19762 41 34 9 chr1 46328683 46331539 -150863893 + RLTR1B-int LTR ERV1 216 3222 -77 4 938 634 126 6 67 chr1 46331543 46331695 -150863737 + RLTR1B-int LTR ERV1 3222 3299 0 4 938 446 48 0 16 chr1 46331695 46331754 -150863678 + RLTR1B LTR ERV1 1 59 -453 4 938 1029 149 0 0 chr1 46331754 46331929 -150863503 + (GGA)n Simple_repeat Simple_repeat 3 177 0 4 938 254 288 58 83 chr1 46332082 46332203 -150863229 + Charlie15a DNA MER1_type 102 219 -5 4 938 210 91 0 0 chr1 46334945 46334978 -150860454 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 938 189 0 0 0 chr1 46334973 46334994 -150860438 + (CAAAC)n Simple_repeat Simple_repeat 1 21 0 4 938 1661 193 73 109 chr1 46335999 46336547 -150858885 - RLTR11A LTR ERVK 0 528 1 4 938 180 211 28 14 chr1 46337146 46337218 -150858214 + CT-rich Low_complexity Low_complexity 3 75 0 4 938 824 295 54 65 chr1 46337240 46338209 -150857223 - L1MA5A LINE L1 -470 5827 4862 4 938 189 0 0 0 chr1 46338209 46338230 -150857202 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 4 938 2566 147 26 32 chr1 46338475 46338939 -150856493 + RMER6B LTR ERVK 1 461 0 4 938 23 0 0 0 chr1 46339670 46339693 -150855739 + AT_rich Low_complexity Low_complexity 1 23 0 4 938 32913 61 1 5 chr1 46339693 46341320 -150854112 - L1Md_F2 LINE L1 -2 6580 4988 4 938 1266 20 0 0 chr1 46341320 46341467 -150853965 - B1_Mm SINE Alu 0 147 1 4 938 32913 80 3 25 chr1 46341467 46346113 -150849319 - L1Md_F2 LINE L1 -896 4987 415 4 938 333 0 0 0 chr1 46346656 46346693 -150848739 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 938 690 169 27 75 chr1 46346694 46346841 -150848591 - B3 SINE B2 -76 140 1 4 938 2946 142 33 27 chr1 46347911 46348432 -150847000 + RLTR28 LTR ERVL 1 524 0 4 938 2167 136 22 44 chr1 46348742 46349149 -150846283 - RMER10B LTR ERVL 0 398 1 4 938 525 270 77 26 chr1 46349511 46349729 -150845703 - B4A SINE B4 -51 241 8 4 938 494 157 12 12 chr1 46349811 46349895 -150845537 + B1_Mur2 SINE Alu 45 128 -21 4 938 524 255 15 43 chr1 46349895 46350313 -150845119 + GA-rich Low_complexity Low_complexity 1 406 0 4 938 319 333 59 33 chr1 46350335 46350487 -150844945 + HAL1-3A_ME LINE L1 2284 2439 -419 4 938 641 76 0 11 chr1 46350492 46350585 -150844847 + (GAGAA)n Simple_repeat Simple_repeat 4 95 0 4 938 384 345 117 16 chr1 46351061 46351317 -150844115 - L1ME3 LINE L1 -47 6115 5834 4 938 789 271 232 20 chr1 46351348 46351812 -150843620 - MER67C LTR ERV1 0 711 150 4 938 555 223 56 28 chr1 46351880 46352023 -150843409 + RSINE1 SINE B4 19 165 0 4 938 318 205 60 90 chr1 46352035 46352201 -150843231 - MER67C LTR ERV1 -550 161 1 4 938 369 328 85 13 chr1 46352220 46352455 -150842977 - L1ME3 LINE L1 -406 5767 5516 4 938 1641 208 128 68 chr1 46353218 46353718 -150841714 + RLTR20B3 LTR ERVK 21 550 -27 4 938 652 143 109 16 chr1 46354142 46354270 -150841162 + MTC LTR MaLR 1 140 -281 4 938 191 103 0 25 chr1 46354467 46354507 -150840925 + (TTATA)n Simple_repeat Simple_repeat 3 41 0 4 938 378 287 93 29 chr1 46355831 46355957 -150839475 + B1F SINE Alu 1 138 -11 4 938 213 39 0 0 chr1 46355957 46355983 -150839449 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 938 378 287 93 29 chr1 46355983 46355996 -150839436 + B1F SINE Alu 139 149 0 4 938 373 149 0 51 chr1 46356950 46357027 -150838405 - RMER10A LTR ERVL 0 442 370 4 938 1595 154 111 0 chr1 46357027 46357306 -150838126 + ORR1A4 LTR MaLR 1 310 -19 4 938 4238 148 62 19 chr1 46357342 46358115 -150837317 + ORR1A4-int LTR MaLR 1 806 -1157 4 938 866 181 0 81 chr1 46358008 46358182 -150837250 + MT2B LTR ERVL 133 292 -309 4 938 7428 133 3 72 chr1 46358136 46359475 -150835957 + ORR1A4-int LTR MaLR 718 1963 0 4 938 1849 171 3 49 chr1 46359475 46359819 -150835613 + ORR1A4 LTR MaLR 1 328 -1 4 938 333 275 83 0 chr1 46361427 46361536 -150833896 + ORSL DNA Tip100 158 275 0 4 938 207 310 201 14 chr1 46362017 46362161 -150833271 - MIRb SINE MIR -16 252 82 4 938 31087 65 1 1 chr1 46362444 46367444 -150827988 - L1Md_F2 LINE L1 -12 6570 1567 4 938 1311 164 4 22 chr1 46368238 46368468 -150826964 + URR1A DNA MER1_type 1 226 0 4 938 192 231 0 0 chr1 46369520 46369572 -150825860 + (TATG)n Simple_repeat Simple_repeat 4 55 0 4 938 471 35 0 0 chr1 46369674 46369731 -150825701 + (GAAAA)n Simple_repeat Simple_repeat 3 59 0 4 938 513 261 62 14 chr1 46369740 46369884 -150825548 + RSINE1 SINE B4 4 154 -11 4 938 204 158 0 0 chr1 46369899 46369937 -150825495 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 938 35005 28 6 7 chr1 46370195 46375578 -150819854 + L1Md_T LINE L1 214 5585 -298 4 938 8119 46 0 9 chr1 46375579 46376584 -150818848 + L1Md_T LINE L1 5587 6582 0 4 938 3661 109 8 0 chr1 46377248 46377773 -150817659 + L1_Mus2 LINE L1 6038 6566 0 4 938 373 169 0 0 chr1 46378705 46378776 -150816656 + Lx9 LINE L1 7293 7363 -281 4 938 253 306 71 0 chr1 46378919 46379017 -150816415 - PB1D10 SINE Alu -8 109 5 4 938 454 197 0 0 chr1 46379499 46379575 -150815857 + 4.5SRNA scRNA scRNA 4 79 -15 4 938 1936 143 29 38 chr1 46380668 46381009 -150814423 + ORR1A1 LTR MaLR 1 338 -8 4 938 21 0 0 0 chr1 46381366 46381387 -150814045 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 29 0 0 0 chr1 46382913 46382942 -150812490 + AT_rich Low_complexity Low_complexity 1 29 0 4 938 6394 34 0 0 chr1 46383444 46384231 -150811201 - L1Md_A LINE L1 -53 6529 5743 4 938 195 129 0 0 chr1 46384292 46384323 -150811109 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 938 309 271 35 61 chr1 46384625 46384739 -150810693 - L1MC3 LINE L1 -2 7880 7770 4 938 246 271 0 0 chr1 46384803 46384873 -150810559 + CT-rich Low_complexity Low_complexity 1 70 0 4 938 387 0 0 0 chr1 46384878 46384921 -150810511 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 938 471 343 130 0 chr1 46384953 46385122 -150810310 + RMER30 DNA MER1_type 10 200 -2 4 938 217 197 33 0 chr1 46385326 46385387 -150810045 - ID4 SINE ID -6 77 15 4 938 996 33 0 0 chr1 46385545 46385665 -150809767 + (TTTTC)n Simple_repeat Simple_repeat 2 121 0 4 938 333 316 51 19 chr1 46386002 46386248 -150809184 - L1MC3 LINE L1 -1041 7001 6692 4 938 692 231 28 0 chr1 46386261 46386404 -150809028 + B1_Mur2 SINE Alu 1 147 -2 4 938 182 143 20 0 chr1 46386849 46386898 -150808534 + T-rich Low_complexity Low_complexity 2 51 0 4 938 34369 68 2 6 chr1 46386910 46393079 -150802353 - L1Md_F3 LINE L1 -2 6582 441 4 938 297 351 39 59 chr1 46393088 46393291 -150802141 - LTR78 LTR ERV1 -159 1145 947 4 938 500 210 70 0 chr1 46394966 46395066 -150800366 - PB1D9 SINE Alu -8 112 6 4 938 262 262 263 61 chr1 46395066 46395080 -150800352 - B4A SINE B4 -73 219 83 4 938 208 135 0 0 chr1 46395081 46395118 -150800314 + (T)n Simple_repeat Simple_repeat 1 37 0 4 938 343 274 32 81 chr1 46395118 46395241 -150800191 - B1F SINE Alu 0 149 33 4 938 232 327 10 19 chr1 46395251 46395354 -150800078 + CT-rich Low_complexity Low_complexity 3 104 0 4 938 345 277 66 83 chr1 46395421 46395602 -150799830 + BLACKJACK DNA AcHobo 1748 1925 -1019 4 938 489 247 47 36 chr1 46395883 46396076 -150799356 + L1MC LINE L1 3813 4007 -2139 4 938 1080 140 96 0 chr1 46396078 46396257 -150799175 - ORR1C2 LTR MaLR -2 382 152 4 938 363 23 0 0 chr1 46396257 46396301 -150799131 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 938 722 261 67 9 chr1 46396301 46396345 -150799087 - ORR1C2 LTR MaLR -195 151 109 4 938 1114 88 0 0 chr1 46397948 46398095 -150797337 + B1_Mus2 SINE Alu 1 147 0 4 938 709 242 62 10 chr1 46398146 46398338 -150797094 - B3 SINE B2 -10 206 5 4 938 756 173 7 22 chr1 46398590 46398726 -150796706 + B1_Mus2 SINE Alu 14 147 0 4 938 267 133 0 0 chr1 46398741 46398786 -150796646 + (A)n Simple_repeat Simple_repeat 1 45 0 4 938 218 229 8 56 chr1 46398790 46398915 -150796517 + A-rich Low_complexity Low_complexity 4 122 0 4 938 354 74 0 0 chr1 46399114 46399168 -150796264 + (T)n Simple_repeat Simple_repeat 1 54 0 4 117 3660 62 20 4 chr1 46399353 46399841 -150795591 - LTRIS2 LTR ERV1 0 564 69 4 939 265 310 125 97 chr1 46400902 46401048 -150794384 - Tigger13a DNA MER2_type -145 626 484 4 939 1010 89 132 6 chr1 46401048 46401207 -150794225 - B2_Mm2 SINE B2 -14 181 3 4 939 265 310 125 97 chr1 46401207 46401371 -150794061 - Tigger13a DNA MER2_type -288 483 307 4 939 353 337 11 60 chr1 46401786 46401969 -150793463 - MIR SINE MIR -86 176 3 4 939 38491 17 1 6 chr1 46402589 46408768 -150786664 - L1Md_A LINE L1 -3 6579 440 4 939 1721 148 28 0 chr1 46408893 46409184 -150786248 + Lx3C LINE L1 6574 6872 -104 5 939 215 321 168 21 chr1 46409938 46410129 -150785303 - L2a LINE L2 -1 3425 3207 5 939 462 172 0 0 chr1 46410232 46410331 -150785101 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 939 316 305 292 7 chr1 46410346 46410788 -150784644 - L2a LINE L2 -510 2909 2342 5 939 24 53 0 0 chr1 46411232 46411270 -150784162 + AT_rich Low_complexity Low_complexity 1 38 0 5 939 295 255 9 28 chr1 46412608 46412717 -150782715 + L1M5 LINE L1 2779 2885 -3261 5 939 784 182 109 0 chr1 46412743 46412963 -150782469 + Lx9 LINE L1 7372 7615 -29 5 939 663 13 0 0 chr1 46413037 46413113 -150782319 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 5 939 369 0 0 0 chr1 46413653 46413694 -150781738 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 939 340 277 70 114 chr1 46414041 46414155 -150781277 + B1F SINE Alu 1 109 -40 5 939 269 119 34 0 chr1 46415576 46415635 -150779797 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 5 939 722 235 171 48 chr1 46415688 46415916 -150779516 - B4A SINE B4 -20 272 17 5 939 677 248 13 7 chr1 46416030 46416180 -150779252 + RSINE1 SINE B4 2 152 -13 5 939 426 356 129 17 chr1 46416835 46417353 -150778079 + L2 LINE L2 1755 2330 -1089 5 939 195 100 0 0 chr1 46417486 46417516 -150777916 + (TCC)n Simple_repeat Simple_repeat 1 30 0 5 939 208 305 200 0 chr1 46418309 46418404 -150777028 - MIRc SINE MIR -70 198 85 5 939 25 0 0 0 chr1 46419044 46419069 -150776363 + AT_rich Low_complexity Low_complexity 1 25 0 5 939 647 290 197 37 chr1 46420009 46420427 -150775005 + MER82 DNA MER2_type 116 600 -53 5 939 591 181 31 6 chr1 46421607 46421768 -150773664 + CT-rich Low_complexity Low_complexity 2 166 0 5 939 371 69 35 0 chr1 46421871 46421929 -150773503 + (TATG)n Simple_repeat Simple_repeat 1 60 0 5 939 436 221 57 19 chr1 46421953 46422110 -150773322 - L1M2 LINE L1 -587 6415 6253 5 939 400 369 63 7 chr1 46422131 46422418 -150773014 - L1M2 LINE L1 -1240 5605 5303 5 939 203 233 0 62 chr1 46422505 46422569 -150772863 + (CATA)n Simple_repeat Simple_repeat 1 60 0 5 939 285 311 67 19 chr1 46422709 46422814 -150772618 + Lx8 LINE L1 7219 7328 -145 5 939 775 279 74 7 chr1 46423138 46423582 -150771850 - L1M2 LINE L1 -3464 3381 2908 5 939 246 32 0 0 chr1 46423582 46423613 -150771819 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 939 7503 59 7 8 chr1 46423617 46425324 -150770108 - L1Md_F2 LINE L1 -20 6562 4862 5 939 239 344 37 11 chr1 46425452 46425640 -150769792 - L1M2 LINE L1 -4096 2753 2561 5 939 353 198 78 10 chr1 46425990 46426092 -150769340 - L1M2 LINE L1 -4341 2508 2400 5 939 463 299 112 76 chr1 46426167 46426417 -150769015 + B4A SINE B4 8 266 -26 5 939 187 215 31 0 chr1 46426685 46426750 -150768682 + CT-rich Low_complexity Low_complexity 2 68 0 5 939 737 113 0 0 chr1 46426789 46426895 -150768537 - B2_Mm2 SINE B2 -88 107 2 5 939 567 0 0 0 chr1 46426907 46426970 -150768462 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 939 1107 62 21 0 chr1 46426971 46427115 -150768317 - B1_Mm SINE Alu 0 147 1 5 939 355 239 0 0 chr1 46427171 46427241 -150768191 - PB1D7 SINE Alu -8 112 43 5 939 271 275 65 104 chr1 46427241 46427334 -150768098 - L1M2 LINE L1 -4972 1877 1803 5 939 780 297 22 27 chr1 46427334 46427559 -150767873 - ID_B1 SINE B4 0 224 1 5 939 271 275 65 104 chr1 46427559 46427802 -150767630 - L1M2 LINE L1 -5047 1802 1554 5 939 991 66 0 0 chr1 46431041 46431162 -150764270 + 5S rRNA rRNA 1 121 0 5 939 2116 39 0 28 chr1 46431163 46431450 -150763982 + L1Md_F3 LINE L1 5676 5954 -630 5 939 717 45 0 0 chr1 46431450 46431539 -150763893 + (TC)n Simple_repeat Simple_repeat 1 89 0 5 939 231 88 0 0 chr1 46431550 46431584 -150763848 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 939 25 31 0 0 chr1 46432084 46432116 -150763316 + AT_rich Low_complexity Low_complexity 1 32 0 5 939 5495 3 2 0 chr1 46432151 46432758 -150762674 - L1Md_A LINE L1 0 6582 5975 5 939 27 108 0 0 chr1 46432778 46432889 -150762543 + AT_rich Low_complexity Low_complexity 1 111 0 5 939 23 0 0 0 chr1 46432962 46432985 -150762447 + AT_rich Low_complexity Low_complexity 1 23 0 5 939 389 240 121 67 chr1 46433158 46433299 -150762133 + B3A SINE B2 19 172 -26 5 939 576 0 0 0 chr1 46433299 46433363 -150762069 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 939 207 0 0 0 chr1 46433363 46433385 -150762047 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 939 389 240 121 67 chr1 46433385 46433407 -150762025 + B3A SINE B2 173 191 -7 5 939 183 129 0 0 chr1 46433452 46433483 -150761949 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 5 939 357 305 9 9 chr1 46433483 46433589 -150761843 - PB1D7 SINE Alu -14 106 1 5 939 348 282 49 3 chr1 46433628 46433725 -150761707 + PB1D10 SINE Alu 9 108 -9 5 939 2841 118 7 39 chr1 46434682 46435116 -150760316 - RLTR9B2 LTR ERVK 0 420 1 5 939 4148 91 5 69 chr1 46436340 46437002 -150758430 - L1VL4 LINE L1 -3966 1917 1304 5 939 1191 41 0 13 chr1 46437002 46437151 -150758281 - B1_Mm SINE Alu 0 147 1 5 939 4148 138 6 21 chr1 46437151 46437726 -150757706 - L1VL4 LINE L1 -5354 1303 725 5 939 344 289 25 6 chr1 46437705 46437865 -150757567 - L1VL4 LINE L1 -5783 833 671 5 939 240 206 69 56 chr1 46437928 46438000 -150757432 - L1VL1 LINE L1 -6065 357 285 5 939 2059 145 6 6 chr1 46438061 46438387 -150757045 - Lx4A LINE L1 -17 7041 6716 5 939 844 196 50 44 chr1 46439300 46439481 -150755951 + B3A SINE B2 1 182 -16 5 939 641 258 115 22 chr1 46439766 46439948 -150755484 + B3A SINE B2 3 201 -15 5 939 4412 151 28 34 chr1 46439948 46440878 -150754554 + L1Md_T LINE L1 282 1205 -5411 5 939 20588 50 14 1 chr1 46440884 46445005 -150750427 + L1Md_T LINE L1 1170 5586 -297 5 939 8270 59 9 8 chr1 46445005 46445999 -150749433 + L1Md_T LINE L1 5587 6581 -1 5 939 569 254 47 16 chr1 46446331 46446459 -150748973 + ETnERV2-int LTR ERVK 7070 7201 -205 5 939 4583 102 50 0 chr1 46447042 46447659 -150747773 - L1_Mus3 LINE L1 0 6638 5991 5 939 554 28 0 14 chr1 46447903 46447976 -150747456 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 939 252 276 198 9 chr1 46447978 46448084 -150747348 - Lx7 LINE L1 -374 7322 7197 5 939 21 0 0 0 chr1 46448612 46448633 -150746799 + AT_rich Low_complexity Low_complexity 1 21 0 5 939 984 93 0 48 chr1 46448798 46448945 -150746487 - L1_Mus1 LINE L1 -1 6566 6427 5 939 635 234 222 53 chr1 46449876 46450178 -150745254 - ORR1E LTR MaLR -3 356 4 5 939 958 146 0 0 chr1 46450930 46451074 -150744358 + B1_Mm SINE Alu 4 147 0 5 939 263 28 0 27 chr1 46451074 46451111 -150744321 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 5 939 258 261 116 50 chr1 46452186 46452307 -150743125 - MIRb SINE MIR -127 141 13 5 939 2570 123 48 14 chr1 46454108 46454546 -150740886 + RLTR28 LTR ERVL 1 453 -71 5 939 365 286 72 68 chr1 46454671 46454892 -150740540 - L1MB7 LINE L1 -8 6176 5955 5 939 281 303 66 51 chr1 46455620 46455805 -150739627 - ORR1C1 LTR MaLR -119 265 64 5 939 352 316 107 39 chr1 46455916 46456094 -150739338 - RMER15 LTR ERVL -15 560 371 5 939 296 74 0 53 chr1 46457313 46457370 -150738062 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 939 352 292 66 0 chr1 46457844 46457950 -150737482 - MLT1A LTR MaLR -18 356 244 5 939 353 380 37 9 chr1 46458671 46458889 -150736543 - L1ME4a LINE L1 -297 5827 5604 5 939 21 36 0 0 chr1 46458939 46458967 -150736465 + AT_rich Low_complexity Low_complexity 1 28 0 5 939 7219 138 38 17 chr1 46461216 46461356 -150734076 + Lx2 LINE L1 5720 5875 -1122 5 939 405 0 0 0 chr1 46461356 46461401 -150734031 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 939 7219 138 38 17 chr1 46461401 46462511 -150732921 + Lx2 LINE L1 5876 6997 0 5 939 12577 107 14 3 chr1 46462516 46464890 -150730542 + L1_Mus3 LINE L1 3985 6389 -249 5 939 275 311 76 22 chr1 46465227 46465319 -150730113 - MER21B LTR ERV1 -207 656 560 5 939 7282 112 20 22 chr1 46465779 46466804 -150728628 + RLTR13D5 LTR ERVK 1 1023 0 5 939 2007 228 19 44 chr1 46466896 46467415 -150728017 + L1_Rod LINE L1 3852 4357 -1490 5 939 242 279 16 0 chr1 46467707 46467768 -150727664 + CT-rich Low_complexity Low_complexity 3 64 0 5 939 576 182 84 42 chr1 46467845 46467988 -150727444 - B1F SINE Alu 0 149 1 5 939 246 325 97 31 chr1 46468072 46468329 -150727103 - L1MC2 LINE L1 -2 6342 6069 5 939 248 358 0 0 chr1 46468600 46468674 -150726758 - L2b LINE L2 -217 3170 3094 5 939 375 121 0 0 chr1 46468884 46468942 -150726490 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 939 1332 19 0 0 chr1 46468942 46469097 -150726335 + (GGGAGA)n Simple_repeat Simple_repeat 3 157 0 5 939 2700 81 5 5 chr1 46470152 46470523 -150724909 - RLTR1C LTR ERV1 -16 487 117 5 939 3335 87 27 31 chr1 46471649 46472133 -150723299 - RLTR45 LTR ERVK 0 482 1 5 939 563 0 15 0 chr1 46473866 46473933 -150721499 + (TAA)n Simple_repeat Simple_repeat 2 69 0 5 939 227 281 16 0 chr1 46474417 46474481 -150720951 + CT-rich Low_complexity Low_complexity 2 66 0 5 939 750 240 19 0 chr1 46475010 46475164 -150720268 - RSINE1 SINE B4 -6 159 3 5 939 189 107 0 0 chr1 46475302 46475330 -150720102 + (A)n Simple_repeat Simple_repeat 1 28 0 5 939 768 223 0 33 chr1 46476851 46477004 -150718428 + B1_Mur1 SINE Alu 2 149 0 5 939 389 141 0 14 chr1 46477093 46477165 -150718267 + GA-rich Low_complexity Low_complexity 2 72 0 5 939 783 286 82 13 chr1 46477167 46477472 -150717960 + L1MA4 LINE L1 5599 5924 -376 5 939 576 293 40 42 chr1 46479132 46479360 -150716072 - RLTR16 LTR ERVK -245 283 32 5 939 3374 153 11 13 chr1 46479382 46479911 -150715521 - RLTR12B LTR ERVK 0 528 1 5 939 247 314 38 16 chr1 46480261 46480396 -150715036 - L1M4 LINE L1 -555 5625 5483 5 939 281 333 66 10 chr1 46480376 46480573 -150714859 - L1M4 LINE L1 -866 5280 5073 5 939 658 289 0 15 chr1 46480581 46480718 -150714714 + RSINE1 SINE B4 3 137 -28 5 939 951 166 25 56 chr1 46480755 46480953 -150714479 + B2_Mm2 SINE B2 1 192 -3 5 939 397 278 95 17 chr1 46480967 46481146 -150714286 - L1M4 LINE L1 -1073 5067 4875 5 939 400 253 44 51 chr1 46481128 46481286 -150714146 - L1M4 LINE L1 -1375 4771 4615 5 939 396 304 17 26 chr1 46481296 46481411 -150714021 + PB1D10 SINE Alu 4 117 0 5 939 369 247 56 11 chr1 46482800 46482890 -150712542 - B1F2 SINE Alu -34 115 22 5 939 701 239 81 101 chr1 46483155 46483453 -150711979 + B4A SINE B4 1 292 0 5 939 237 208 89 13 chr1 46483502 46483580 -150711852 - MTEa LTR MaLR -9 361 279 6 939 270 0 0 0 chr1 46483963 46483993 -150711439 + (T)n Simple_repeat Simple_repeat 1 30 0 6 939 925 169 7 0 chr1 46485191 46485333 -150710099 - B1_Mur4 SINE Alu -6 144 2 6 939 762 251 82 0 chr1 46485344 46485527 -150709905 - B3 SINE B2 -13 203 6 6 939 466 306 9 18 chr1 46485659 46485769 -150709663 - PB1D10 SINE Alu -7 110 2 6 939 225 273 64 13 chr1 46485968 46486046 -150709386 - LTR33 LTR ERVL -13 502 421 6 939 379 207 34 11 chr1 46486661 46486749 -150708683 - RSINE1 SINE B4 -64 101 12 6 939 31 44 0 0 chr1 46486765 46486810 -150708622 + AT_rich Low_complexity Low_complexity 1 45 0 6 939 1282 230 103 57 chr1 46486810 46486892 -150708540 + MTD LTR MaLR 15 79 -340 6 939 490 134 98 0 chr1 46486892 46487004 -150708428 - L1_Mus3 LINE L1 0 6638 6516 6 939 1282 230 103 57 chr1 46487004 46487308 -150708124 + MTD LTR MaLR 80 419 0 6 939 356 306 19 0 chr1 46487404 46487512 -150707920 - L1M3 LINE L1 -1830 4310 4201 6 939 1261 32 6 6 chr1 46488751 46488962 -150706470 + L1Md_A LINE L1 6427 6582 0 6 939 263 336 101 32 chr1 46490000 46490218 -150705214 + L2a LINE L2 3192 3424 -2 6 939 37 39 0 0 chr1 46490537 46490588 -150704844 + AT_rich Low_complexity Low_complexity 1 51 0 6 939 31352 106 30 4 chr1 46490657 46496666 -150698766 + L1_Mus1 LINE L1 384 6541 -26 6 939 368 276 44 39 chr1 46496666 46496686 -150698746 - MER33 DNA MER1_type -125 199 179 6 939 186 43 0 0 chr1 46496686 46496709 -150698723 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 939 368 276 44 39 chr1 46496709 46496869 -150698563 - MER33 DNA MER1_type -146 178 18 6 939 639 40 0 0 chr1 46497026 46497101 -150698331 + L1_Mus1 LINE L1 5590 5664 -903 6 939 1980 239 19 35 chr1 46497416 46497898 -150697534 - RMER19C LTR ERVK 0 611 138 6 939 195 204 148 0 chr1 46498162 46498216 -150697216 + MIRc SINE MIR 91 152 -116 6 939 7347 84 16 2 chr1 46498284 46499819 -150695613 - L1_Mus1 LINE L1 -27 6540 4987 6 939 1333 0 0 0 chr1 46499819 46500000 -150695432 - L1Md_T LINE L1 0 6582 6428 6 939 36151 31 1 0 chr1 46500000 46506903 -150688529 - L1Md_T LINE L1 -155 6430 1 1 939 21736 124 14 7 chr1 46506898 46507171 -150688261 - L1VL4 LINE L1 -875 5008 4733 2 939 198 0 0 0 chr1 46507171 46507193 -150688239 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 3 939 21736 124 14 7 chr1 46507193 46507713 -150687719 - L1VL4 LINE L1 -1151 4732 4207 2 939 261 0 0 0 chr1 46507713 46507742 -150687690 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 939 21736 131 12 21 chr1 46507742 46511275 -150684157 - L1VL4 LINE L1 -1677 4206 716 2 939 267 154 20 71 chr1 46511754 46511852 -150683580 + A-rich Low_complexity Low_complexity 3 95 0 5 939 328 308 8 8 chr1 46511858 46511976 -150683456 + L1M2 LINE L1 3288 3405 -2738 6 939 250 254 120 31 chr1 46512003 46512194 -150683238 + L1MA6 LINE L1 6031 6238 -62 7 939 237 75 57 0 chr1 46512489 46512542 -150682890 + (TA)n Simple_repeat Simple_repeat 1 56 0 8 939 207 0 0 0 chr1 46512722 46512745 -150682687 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 939 617 25 13 0 chr1 46513002 46513081 -150682351 + (TTC)n Simple_repeat Simple_repeat 3 82 0 1 939 434 312 106 0 chr1 46513349 46513519 -150681913 + B4A SINE B4 8 195 -97 1 939 237 33 0 0 chr1 46514898 46514928 -150680504 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 1 939 370 302 61 30 chr1 46514933 46515032 -150680400 - PB1D9 SINE Alu -16 104 3 1 939 257 333 181 0 chr1 46515298 46515403 -150680029 - PB1 SINE Alu -2 125 2 1 939 189 0 0 0 chr1 46516109 46516130 -150679302 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 939 3887 236 94 16 chr1 46516130 46517310 -150678122 - Lx9 LINE L1 -130 7514 6093 1 939 475 251 46 71 chr1 46517377 46517574 -150677858 - Lx9 LINE L1 -1618 6026 5835 1 939 322 246 125 15 chr1 46517957 46518124 -150677308 - L1M5 LINE L1 -2152 3994 3813 1 939 463 304 68 9 chr1 46519001 46519220 -150676212 - L1M5 LINE L1 -2479 3667 3436 1 939 264 30 0 0 chr1 46519731 46519764 -150675668 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 939 637 141 8 16 chr1 46519766 46519889 -150675543 + GA-rich Low_complexity Low_complexity 2 123 0 1 939 450 116 14 42 chr1 46520183 46520335 -150675097 + GA-rich Low_complexity Low_complexity 1 147 0 2 939 304 286 142 57 chr1 46520341 46520482 -150674950 + HAL1-3A_ME LINE L1 2285 2437 -421 2 939 780 145 29 4 chr1 46520486 46520733 -150674699 + GA-rich Low_complexity Low_complexity 1 253 0 2 939 548 187 30 18 chr1 46520753 46520922 -150674510 + GA-rich Low_complexity Low_complexity 4 174 0 2 939 446 0 0 18 chr1 46520923 46520978 -150674454 + (GAGAA)n Simple_repeat Simple_repeat 1 54 0 2 939 337 283 77 50 chr1 46521069 46521251 -150674181 + MIRb SINE MIR 24 210 -58 2 939 585 264 146 16 chr1 46523165 46523350 -150672082 + B3 SINE B2 3 211 -5 2 939 824 173 44 19 chr1 46523516 46523675 -150671757 - ORR1D1 LTR MaLR -211 163 1 2 939 207 0 0 0 chr1 46524329 46524352 -150671080 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 939 32582 74 2 1 chr1 46524354 46530548 -150664884 - L1Md_F2 LINE L1 -1 6581 380 2 940 307 261 21 11 chr1 46530919 46531012 -150664420 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 940 694 307 19 9 chr1 46531111 46531325 -150664107 + MER58A DNA MER1_type 9 224 0 3 940 647 216 279 27 chr1 46531374 46531707 -150663725 - Lx4B LINE L1 0 7050 6634 3 940 20048 158 52 61 chr1 46531713 46537172 -150658260 - Lx4B LINE L1 -744 6314 890 3 940 673 147 41 6 chr1 46537359 46537530 -150657902 + CT-rich Low_complexity Low_complexity 2 178 0 3 940 937 153 0 0 chr1 46537551 46537695 -150657737 - B1_Mus1 SINE Alu 0 148 5 3 940 393 338 32 45 chr1 46537960 46538115 -150657317 - ID_B1 SINE B4 -11 213 61 3 940 231 272 0 11 chr1 46539000 46539093 -150656339 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 940 324 0 0 0 chr1 46539193 46539229 -150656203 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 940 796 204 0 0 chr1 46539330 46539477 -150655955 + B1_Mur4 SINE Alu 1 147 -3 3 940 30 0 0 0 chr1 46539619 46539649 -150655783 + AT_rich Low_complexity Low_complexity 1 30 0 3 940 207 243 0 0 chr1 46540069 46540106 -150655326 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 940 396 59 0 0 chr1 46540106 46540157 -150655275 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 940 405 0 0 0 chr1 46540157 46540202 -150655230 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 940 1759 172 3 66 chr1 46540363 46540711 -150654721 - ORR1A4 LTR MaLR 0 329 4 4 940 1026 211 44 122 chr1 46540836 46541158 -150654274 - RLTR40 LTR ERVK 0 817 555 4 940 564 15 0 0 chr1 46541158 46541223 -150654209 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 940 540 203 133 44 chr1 46541223 46541326 -150654106 - RLTR40 LTR ERVK -216 601 480 4 940 985 167 123 66 chr1 46541301 46541545 -150653887 - RLTR40 LTR ERVK -449 368 111 4 940 3254 19 45 0 chr1 46541546 46541924 -150653508 + MTA_Mm LTR MaLR 2 396 0 4 940 8820 14 2 0 chr1 46541924 46542972 -150652460 + MTA_Mm-int LTR MaLR 1 1050 -48 4 940 34631 5 0 0 chr1 46542972 46547093 -150648339 + L1Md_A LINE L1 1465 5586 -297 4 940 9080 2 0 0 chr1 46547093 46548089 -150647343 + L1Md_A LINE L1 5587 6582 0 4 940 484 45 0 0 chr1 46548090 46548156 -150647276 + MTA_Mm-int LTR MaLR 1033 1098 0 4 940 3507 18 2 0 chr1 46548156 46548551 -150646881 + MTA_Mm LTR MaLR 1 396 0 4 940 425 206 10 20 chr1 46548551 46548650 -150646782 - RLTR40 LTR ERVK -702 115 18 4 940 1068 52 26 7 chr1 46548902 46549057 -150646375 + (TTTC)n Simple_repeat Simple_repeat 4 161 0 4 940 351 0 0 0 chr1 46549098 46549137 -150646295 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 940 387 0 0 0 chr1 46549180 46549223 -150646209 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 940 369 0 0 0 chr1 46549266 46549307 -150646125 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 4 940 318 210 16 0 chr1 46549647 46549709 -150645723 - Tigger5 DNA MER2_type -52 2354 2292 4 940 591 308 97 123 chr1 46550000 46550073 -150645359 + MTE2a LTR MaLR 3 54 -325 5 940 3276 49 2 0 chr1 46550073 46550479 -150644953 + L1Md_F2 LINE L1 6176 6582 0 5 940 591 308 97 123 chr1 46550479 46550786 -150644646 + MTE2a LTR MaLR 55 373 -6 5 940 1011 163 40 10 chr1 46551034 46551227 -150644205 - Lx5 LINE L1 -138 6912 6730 5 940 291 266 12 12 chr1 46551308 46551388 -150644044 - BC1_Mm scRNA scRNA -71 81 2 5 940 524 294 24 67 chr1 46551610 46551818 -150643614 - B3 SINE B2 -6 210 12 5 940 25 31 0 0 chr1 46551881 46551913 -150643519 + AT_rich Low_complexity Low_complexity 1 32 0 5 940 28935 89 7 11 chr1 46552424 46558574 -150636858 - L1Md_F2 LINE L1 -11 6571 450 5 940 1575 154 77 26 chr1 46558812 46559125 -150636307 + ORR1A4 LTR MaLR 1 329 0 5 940 3101 103 0 0 chr1 46559436 46559865 -150635567 + L1_Mus2 LINE L1 6132 6560 -6 5 940 830 10 0 10 chr1 46559867 46559967 -150635465 + (GAA)n Simple_repeat Simple_repeat 2 100 0 5 940 299 269 61 21 chr1 46560615 46560710 -150634722 + MTEb LTR MaLR 278 405 -14 6 940 29696 83 4 4 chr1 46561418 46566621 -150628811 + L1Md_F2 LINE L1 387 5586 -297 6 940 7878 53 8 1 chr1 46566621 46567609 -150627823 + L1Md_F2 LINE L1 5587 6581 -1 6 940 21 82 0 0 chr1 46567763 46567812 -150627620 + AT_rich Low_complexity Low_complexity 1 49 0 6 940 26 88 0 0 chr1 46567911 46567979 -150627453 + AT_rich Low_complexity Low_complexity 1 68 0 6 940 210 235 62 124 chr1 46568295 46568392 -150627040 - MIRm SINE MIR -184 92 2 6 940 434 290 77 13 chr1 46568767 46569078 -150626354 - L1MB7 LINE L1 -16 6168 5838 6 940 497 186 31 0 chr1 46569079 46569176 -150626256 + MTD LTR MaLR 1 100 -319 6 940 556 271 170 11 chr1 46569203 46569486 -150625946 - L1M4 LINE L1 -3010 3136 2809 6 940 208 359 0 0 chr1 46569607 46569685 -150625747 + (CATG)n Simple_repeat Simple_repeat 1 78 0 6 940 812 301 33 4 chr1 46569686 46569926 -150625506 - B4A SINE B4 -42 250 4 6 940 1317 144 13 39 chr1 46569954 46570185 -150625247 - URR1A DNA MER1_type -1 225 1 7 940 22 0 0 0 chr1 46572417 46572439 -150622993 + AT_rich Low_complexity Low_complexity 1 22 0 7 940 1948 182 111 3 chr1 46572528 46572908 -150622524 + MTC LTR MaLR 1 421 0 7 940 658 226 0 0 chr1 46572950 46573096 -150622336 + Lx6 LINE L1 7313 7458 -2 7 940 22 56 0 0 chr1 46573148 46573184 -150622248 + AT_rich Low_complexity Low_complexity 1 36 0 7 940 231 360 56 56 chr1 46574513 46574710 -150620722 - L4 LINE RTE -373 1656 1460 7 940 263 275 62 35 chr1 46576698 46576811 -150618621 + PB1D10 SINE Alu 2 117 0 7 940 21 36 0 0 chr1 46576817 46576845 -150618587 + AT_rich Low_complexity Low_complexity 1 28 0 7 940 387 60 0 0 chr1 46576888 46576938 -150618494 + (ATG)n Simple_repeat Simple_repeat 2 51 0 7 940 501 272 13 20 chr1 46577052 46577202 -150618230 - B1F SINE Alu 0 149 1 7 940 301 223 67 10 chr1 46577897 46578001 -150617431 - RLTR22_Mur LTR ERVK -47 1801 1692 8 940 5011 181 84 44 chr1 46577977 46578885 -150616547 - RMER12 LTR ERVK -127 1195 241 8 940 2375 31 0 49 chr1 46578885 46579192 -150616240 + RLTR10B LTR ERVK 1 292 0 8 940 5011 181 84 44 chr1 46579192 46579432 -150616000 - RMER12 LTR ERVK -1082 240 1 8 940 795 189 21 32 chr1 46579479 46579665 -150615767 - B2_Mm2 SINE B2 -9 186 3 8 940 290 279 54 71 chr1 46579873 46579985 -150615447 - PB1D7 SINE Alu -7 113 4 8 940 659 274 19 0 chr1 46582848 46582875 -150612557 + B3A SINE B2 1 27 -171 8 940 2293 103 16 27 chr1 46582875 46583244 -150612188 + L1_Mus3 LINE L1 6274 6638 0 8 940 659 282 31 10 chr1 46583244 46583425 -150612007 + B3A SINE B2 28 214 -2 8 940 225 346 58 19 chr1 46583648 46583804 -150611628 + L2a LINE L2 3264 3425 -1 8 940 641 211 0 43 chr1 46583906 46584094 -150611338 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 940 563 229 0 8 chr1 46585361 46585480 -150609952 - MLT1A1 LTR MaLR 0 408 291 8 940 21 0 0 0 chr1 46586431 46586452 -150608980 + AT_rich Low_complexity Low_complexity 1 21 0 9 940 203 189 19 0 chr1 46586850 46586903 -150608529 + T-rich Low_complexity Low_complexity 2 55 0 9 940 2316 40 7 0 chr1 46587002 46587280 -150608152 + L1Md_F2 LINE L1 6302 6581 -1 9 940 423 336 18 0 chr1 46587577 46587690 -150607742 + PB1D10 SINE Alu 3 117 0 9 940 219 36 0 0 chr1 46588155 46588183 -150607249 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 940 301 161 0 18 chr1 46588183 46588240 -150607192 - B1_Mm SINE Alu -2 145 90 9 940 436 274 201 30 chr1 46588905 46589243 -150606189 + L1MA8 LINE L1 5833 6228 -63 9 940 267 276 43 9 chr1 46590259 46590353 -150605079 - B3A SINE B2 -13 203 107 9 940 236 286 242 13 chr1 46591359 46591508 -150603924 + MIR SINE MIR 49 235 -33 9 940 320 138 34 17 chr1 46593111 46593170 -150602262 + B1_Mur4 SINE Alu 1 60 -90 9 940 333 363 0 0 chr1 46593176 46593311 -150602121 + G-rich Low_complexity Low_complexity 4 138 0 1 940 620 183 0 0 chr1 46593318 46593422 -150602010 + B1_Mus2 SINE Alu 44 147 0 1 940 27011 83 48 3 chr1 46593426 46598414 -150597018 + L1Md_F2 LINE L1 371 5586 -297 1 940 7925 42 17 1 chr1 46598415 46599394 -150596038 + L1Md_F2 LINE L1 5588 6582 0 1 940 21 36 0 0 chr1 46599541 46599569 -150595863 + AT_rich Low_complexity Low_complexity 1 28 0 1 940 591 272 48 0 chr1 46599589 46599714 -150595718 - B1_Mur1 SINE Alu -16 133 3 1 940 235 0 0 54 chr1 46599715 46599752 -150595680 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 940 557 247 116 22 chr1 46600699 46601018 -150594414 - L1MA6 LINE L1 -107 6895 6547 1 940 507 224 129 5 chr1 46601026 46601219 -150594213 - L1MA6 LINE L1 -559 6443 6227 1 940 249 221 29 78 chr1 46601294 46601333 -150594099 - L1MA6 LINE L1 -4246 2603 2565 1 940 4717 120 20 28 chr1 46601333 46602149 -150593283 - RMER17D2 LTR ERVK 0 809 1 1 940 249 221 29 78 chr1 46602149 46602212 -150593220 - L1MA6 LINE L1 -4285 2564 2506 1 940 354 23 0 0 chr1 46602684 46602727 -150592705 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 940 7125 91 17 8 chr1 46602793 46604442 -150590990 - L1_Mus2 LINE L1 -10 6556 4884 1 940 35578 49 14 18 chr1 46604471 46606118 -150589314 - L1Md_A LINE L1 -2 6580 4922 1 940 227 167 46 77 chr1 46606118 46606183 -150589249 + RMER20A LTR ERVK 186 248 -268 1 940 35578 49 14 18 chr1 46606183 46610712 -150584720 - L1Md_A LINE L1 -2 4921 358 1 940 12720 119 7 7 chr1 46610708 46613257 -150582175 - L1VL4 LINE L1 -2606 3277 725 1 940 426 244 16 8 chr1 46613265 46613393 -150582039 - L1VL4 LINE L1 -5813 803 675 1 940 585 289 20 30 chr1 46613424 46613726 -150581706 - L1VL1 LINE L1 -5941 477 5 1 940 183 205 0 0 chr1 46614412 46614451 -150580981 + (TGG)n Simple_repeat Simple_repeat 1 39 0 1 940 1267 153 25 69 chr1 46614474 46614748 -150580684 + Lx3B LINE L1 6708 6969 -4 1 940 276 111 0 0 chr1 46614754 46614799 -150580633 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 940 2111 201 67 5 chr1 46614800 46614988 -150580444 - RLTR20B1 LTR ERVK -106 457 268 1 940 594 0 0 0 chr1 46614988 46615054 -150580378 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 940 2111 201 67 5 chr1 46615054 46615295 -150580137 - RLTR20B1 LTR ERVK -296 267 2 1 940 1603 37 0 20 chr1 46616725 46616920 -150578512 - B2_Mm1t SINE B2 -1 192 2 1 940 335 274 40 3 chr1 46617349 46617518 -150577914 + ERVL-E-int LTR ERVL 4378 4551 -1163 1 940 207 139 0 0 chr1 46617841 46617877 -150577555 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 940 360 214 1 83 chr1 46617890 46618046 -150577386 - L1MA4 LINE L1 -381 5931 5786 1 940 291 229 15 30 chr1 46618383 46618587 -150576845 + CT-rich Low_complexity Low_complexity 1 200 0 1 940 21 0 0 0 chr1 46618901 46618922 -150576510 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 335 221 1 83 chr1 46619177 46619333 -150576099 + L1MA4 LINE L1 5786 5931 -381 1 940 180 152 0 0 chr1 46619346 46619379 -150576053 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 940 36596 7 1 0 chr1 46619664 46625027 -150570405 + L1Md_A LINE L1 223 5586 -297 1 940 8997 6 0 0 chr1 46625027 46626023 -150569409 + L1Md_A LINE L1 5587 6582 0 1 940 1540 274 111 50 chr1 46626188 46626864 -150568568 - Tigger1 DNA MER2_type -241 2177 1461 1 940 555 299 6 55 chr1 46627277 46627440 -150567992 - B4 SINE B4 -98 194 40 1 940 1631 268 120 31 chr1 46627455 46627767 -150567665 - Tigger1 DNA MER2_type -932 1486 1142 1 940 2957 160 46 85 chr1 46627767 46628485 -150566947 + RMER6C LTR ERVK 1 690 0 1 940 1631 272 216 17 chr1 46628485 46629388 -150566044 - Tigger1 DNA MER2_type -1277 1141 64 1 940 295 265 71 10 chr1 46629484 46629583 -150565849 + L2a LINE L2 3316 3420 -6 1 940 31559 103 21 10 chr1 46630250 46636578 -150558854 - L1Md_F2 LINE L1 -1 6581 276 1 940 7554 102 33 19 chr1 46637961 46639681 -150555751 + L1VL4 LINE L1 364 2088 -1471 1 940 2868 124 38 30 chr1 46639681 46640206 -150555226 + RMER17D LTR ERVK 1 529 -360 1 940 33802 36 0 0 chr1 46640206 46645438 -150549994 + L1Md_T LINE L1 260 5589 -297 1 940 9056 4 0 0 chr1 46645438 46646434 -150548998 + L1Md_T LINE L1 5590 6585 0 1 940 1629 99 50 22 chr1 46646446 46646724 -150548708 + RMER17A LTR ERVK 466 751 0 1 940 12218 154 20 10 chr1 46646724 46647075 -150548357 + Lx LINE L1 2443 2797 -3089 1 940 201 39 0 0 chr1 46647075 46647101 -150548331 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 940 12218 154 20 10 chr1 46647101 46649147 -150546285 + Lx LINE L1 2798 4866 -1020 1 940 351 65 0 0 chr1 46649162 46649208 -150546224 + (T)n Simple_repeat Simple_repeat 1 46 0 1 940 1211 41 0 0 chr1 46649208 46649354 -150546078 - B1_Mm SINE Alu 0 147 2 1 940 330 273 0 0 chr1 46649358 46649446 -150545986 + Lx LINE L1 4875 4962 -924 1 940 6306 124 32 17 chr1 46649450 46650778 -150544654 + Lx LINE L1 5306 6654 0 1 940 1393 235 83 5 chr1 46651287 46651442 -150543990 + MTD LTR MaLR 5 164 -255 1 940 672 56 0 0 chr1 46651442 46651531 -150543901 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 940 1393 235 83 5 chr1 46651531 46651760 -150543672 + MTD LTR MaLR 165 419 0 1 940 34 89 0 0 chr1 46652612 46652702 -150542730 + AT_rich Low_complexity Low_complexity 1 90 0 1 940 804 156 14 0 chr1 46652705 46652846 -150542586 + URR1A DNA MER1_type 84 226 0 1 940 865 235 247 32 chr1 46654075 46654387 -150541045 - MTEb LTR MaLR 0 379 1 1 940 1158 75 0 0 chr1 46654642 46654788 -150540644 - B1_Mm SINE Alu 0 147 2 1 940 2403 139 14 90 chr1 46655197 46655501 -150539931 + RMER6B LTR ERVK 1 291 -170 1 940 222 37 0 0 chr1 46655501 46655528 -150539904 + (CTTTG)n Simple_repeat Simple_repeat 3 29 0 1 940 2403 139 14 90 chr1 46655528 46655722 -150539710 + RMER6B LTR ERVK 292 461 0 1 940 4504 88 24 2 chr1 46655841 46656463 -150538969 - L1_Mus3 LINE L1 -5 6633 5998 1 940 5359 74 15 10 chr1 46656469 46657193 -150538239 - L1Md_F2 LINE L1 0 6582 5855 1 940 243 132 0 0 chr1 46657193 46657231 -150538201 - L1_Mus3 LINE L1 -627 6011 5974 1 940 570 98 0 0 chr1 46657284 46657366 -150538066 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 940 30 0 0 0 chr1 46657570 46657600 -150537832 + AT_rich Low_complexity Low_complexity 1 30 0 1 940 3122 211 141 14 chr1 46657750 46658585 -150536847 - Lx9 LINE L1 -164 7480 6540 1 940 276 328 50 20 chr1 46660613 46660812 -150534620 - Lx8 LINE L1 -134 7339 7135 1 940 844 266 62 48 chr1 46660806 46661158 -150534274 - Lx8 LINE L1 -465 7008 6652 1 941 335 295 30 55 chr1 46662858 46663023 -150532409 - MLT1A1 LTR MaLR -2 406 246 1 941 279 200 0 9 chr1 46663192 46663311 -150532121 + GA-rich Low_complexity Low_complexity 1 117 0 1 941 180 0 0 0 chr1 46664135 46664155 -150531277 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 941 1489 147 166 16 chr1 46665216 46665535 -150529897 + ORR1B2 LTR MaLR 1 367 0 1 941 753 302 27 85 chr1 46666361 46666808 -150528624 - Lx8 LINE L1 -18 7455 7026 1 941 324 0 0 0 chr1 46667763 46667799 -150527633 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1 941 21 0 0 0 chr1 46667916 46667937 -150527495 + AT_rich Low_complexity Low_complexity 1 21 0 1 941 489 17 0 0 chr1 46668124 46668182 -150527250 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 941 612 70 0 0 chr1 46668182 46668268 -150527164 + (TTGG)n Simple_repeat Simple_repeat 2 87 0 1 941 244 45 21 43 chr1 46668507 46668554 -150526878 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 941 332 208 10 0 chr1 46669142 46669238 -150526194 + (TCCA)n Simple_repeat Simple_repeat 3 99 0 1 941 639 303 21 126 chr1 46670132 46670457 -150524975 - B4 SINE B4 -1 291 1 1 941 333 0 0 0 chr1 46670631 46670668 -150524764 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 1 941 25 31 0 0 chr1 46670767 46670799 -150524633 + AT_rich Low_complexity Low_complexity 1 32 0 1 941 483 288 65 0 chr1 46673222 46673361 -150522071 + RSINE1 SINE B4 3 150 -15 1 941 251 280 89 45 chr1 46673836 46673948 -150521484 + PB1D10 SINE Alu 1 117 0 1 941 432 130 0 0 chr1 46674002 46674071 -150521361 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 1 941 481 292 28 17 chr1 46674360 46674541 -150520891 + B3A SINE B2 1 183 -15 1 941 201 200 22 0 chr1 46674708 46674753 -150520679 + L2c LINE L2 3029 3074 -313 1 941 1831 144 107 29 chr1 46676471 46676856 -150518576 - RLTR9F LTR ERVK 0 415 1 1 941 340 127 41 27 chr1 46676857 46676930 -150518502 - ETnERV2-int LTR ERVK -2 7404 7331 1 941 3797 164 28 22 chr1 46677147 46678030 -150517402 - ETnERV2-int LTR ERVK -1179 6227 5579 1 941 9180 159 59 32 chr1 46678020 46680602 -150514830 - ETnERV2-int LTR ERVK -3308 4098 466 1 941 782 230 52 62 chr1 46680615 46680939 -150514493 - ETnERV-int LTR ERVK -2991 323 3 1 941 1868 157 88 16 chr1 46680941 46681328 -150514104 - RLTR9F LTR ERVK 0 415 1 1 941 441 0 0 0 chr1 46681392 46681441 -150513991 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 941 390 336 26 13 chr1 46681454 46681608 -150513824 - RSINE1 SINE B4 -7 158 3 1 941 219 88 0 0 chr1 46681943 46681977 -150513455 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 1 941 25 65 0 0 chr1 46682099 46682145 -150513287 + AT_rich Low_complexity Low_complexity 1 46 0 1 941 26 30 0 0 chr1 46682171 46682204 -150513228 + AT_rich Low_complexity Low_complexity 1 33 0 1 941 3611 123 118 28 chr1 46683327 46684015 -150511417 - RMER6A LTR ERVK -6 750 1 1 941 576 0 0 0 chr1 46684872 46684936 -150510496 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 941 717 12 0 0 chr1 46684936 46685018 -150510414 + (TTC)n Simple_repeat Simple_repeat 2 83 0 1 941 183 139 0 0 chr1 46687009 46687045 -150508387 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 941 1438 142 172 28 chr1 46687783 46688103 -150507329 - ORR1B2 LTR MaLR 0 367 2 1 941 544 169 0 0 chr1 46688564 46688647 -150506785 - ORR1B2 LTR MaLR -216 151 69 1 941 3209 86 7 19 chr1 46689503 46689967 -150505465 - L1_Mus1 LINE L1 -1 6566 6109 1 941 225 250 0 0 chr1 46690123 46690199 -150505233 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 941 627 280 95 1 chr1 46690201 46690378 -150505054 - B3A SINE B2 -15 201 9 1 941 22 0 0 0 chr1 46690763 46690785 -150504647 + AT_rich Low_complexity Low_complexity 1 22 0 1 941 269 275 212 0 chr1 46690787 46690976 -150504456 - Lx7 LINE L1 -19 7677 7449 1 941 249 33 0 0 chr1 46690984 46691014 -150504418 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 941 484 296 13 0 chr1 46691056 46691215 -150504217 - Lx7 LINE L1 -388 7308 7148 1 941 3500 18 2 0 chr1 46691737 46692132 -150503300 - MTA_Mm LTR MaLR 0 396 1 1 941 343 305 28 0 chr1 46692311 46692452 -150502980 + L1MC1 LINE L1 6004 6148 -185 1 941 230 268 91 78 chr1 46692627 46692704 -150502728 + LTR87 LTR ERVL? 278 355 -269 1 941 313 300 11 11 chr1 46692796 46692887 -150502545 + MER58C DNA MER1_type 2 92 -123 1 941 270 329 35 22 chr1 46693019 46693246 -150502186 - L1M4 LINE L1 -1720 4426 4197 1 941 288 323 113 25 chr1 46693925 46694084 -150501348 - LTR80B LTR ERVL -177 407 235 1 941 1222 202 5 0 chr1 46694639 46694862 -150500570 + URR1B DNA MER1_type 2 225 0 1 941 306 0 0 0 chr1 46694882 46694916 -150500516 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 941 219 152 0 0 chr1 46695201 46695247 -150500185 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 941 38 0 0 0 chr1 46695327 46695365 -150500067 + AT_rich Low_complexity Low_complexity 1 38 0 2 941 203 189 0 0 chr1 46696665 46696702 -150498730 + T-rich Low_complexity Low_complexity 1 37 0 2 941 387 226 25 1 chr1 46696713 46696809 -150498623 - B1_Mus1 SINE Alu -21 99 1 2 941 364 310 6 55 chr1 46697001 46697165 -150498267 - RMER10B LTR ERVL -7 391 236 2 941 21179 112 14 2 chr1 46698026 46702111 -150493321 - L1_Mus2 LINE L1 0 6566 2426 2 941 641 209 13 0 chr1 46702107 46702260 -150493172 - L1_Mus2 LINE L1 -5737 879 725 2 941 294 294 19 10 chr1 46702279 46702382 -150493050 - L1_Mus2 LINE L1 -5838 778 675 2 941 512 247 7 120 chr1 46702451 46702686 -150492746 - L1VL1 LINE L1 -6027 395 29 2 941 250 289 0 0 chr1 46703184 46703236 -150492196 - ID SINE ID -144 80 29 2 941 246 356 27 0 chr1 46703186 46703259 -150492173 - ID4 SINE ID -6 77 3 2 941 357 331 75 38 chr1 46703380 46703540 -150491892 + B4A SINE B4 4 169 -123 2 941 2445 192 60 74 chr1 46704082 46704716 -150490716 - RMER20B LTR ERVK 0 627 3 2 941 217 333 14 55 chr1 46705004 46705077 -150490355 - ID4_ SINE ID -3 80 11 2 941 431 251 1 8 chr1 46705110 46705216 -150490216 + B3A SINE B2 2 102 -114 2 941 2750 112 5 2 chr1 46706588 46706990 -150488442 - RLTR9D LTR ERVK 0 403 1 2 941 349 167 27 14 chr1 46706991 46707064 -150488368 - ETnERV2-int LTR ERVK -2 7404 7331 2 941 3756 188 24 35 chr1 46707279 46709327 -150486105 - ETnERV2-int LTR ERVK -3321 4085 2356 2 941 2559 148 38 12 chr1 46709343 46709823 -150485609 - ETnERV2-int LTR ERVK -4419 2987 2496 2 941 2131 156 33 12 chr1 46709848 46710270 -150485162 - ETnERV2-int LTR ERVK -5321 2085 1655 2 941 27 87 0 0 chr1 46710339 46710408 -150485024 + AT_rich Low_complexity Low_complexity 1 69 0 2 941 1110 61 0 0 chr1 46712620 46712767 -150482665 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 941 640 281 57 5 chr1 46712901 46713112 -150482320 + ID_B1 SINE B4 3 224 0 2 941 588 120 26 53 chr1 46713762 46713876 -150481556 - PB1D9 SINE Alu -1 119 9 2 941 32 0 0 0 chr1 46715722 46715754 -150479678 + AT_rich Low_complexity Low_complexity 1 32 0 2 941 255 286 110 52 chr1 46718011 46718166 -150477266 - MLT1B LTR MaLR -16 374 211 2 941 217 377 89 21 chr1 46719089 46719325 -150476107 + L2a LINE L2 3141 3392 -34 2 941 321 266 36 7 chr1 46719607 46719747 -150475685 + L1M4 LINE L1 5107 5250 -896 2 941 2226 179 57 0 chr1 46720472 46720890 -150474542 + Lx2B LINE L1 6559 7000 0 2 941 3666 212 44 11 chr1 46721149 46722049 -150473383 - Lx9 LINE L1 -2 7642 6713 2 941 24 32 0 0 chr1 46722119 46722150 -150473282 + AT_rich Low_complexity Low_complexity 1 31 0 2 941 228 35 0 0 chr1 46723993 46724022 -150471410 + (CAGAA)n Simple_repeat Simple_repeat 4 32 0 2 941 537 280 212 51 chr1 46725472 46725689 -150469743 + B4 SINE B4 35 286 -6 2 941 187 271 28 28 chr1 46726092 46726164 -150469268 - L4 LINE RTE -1206 823 752 2 941 25 0 0 0 chr1 46726189 46726214 -150469218 + AT_rich Low_complexity Low_complexity 1 25 0 2 941 1366 250 110 32 chr1 46727246 46727863 -150467569 - Lx9 LINE L1 0 7644 6980 2 941 21 0 0 0 chr1 46728499 46728520 -150466912 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 237 317 0 12 chr1 46729717 46729800 -150465632 + (CCA)n Simple_repeat Simple_repeat 2 83 0 2 941 857 61 164 22 chr1 46729938 46730116 -150465316 + L1_Mus2 LINE L1 6407 6566 0 2 941 28183 130 25 7 chr1 46730139 46733095 -150462337 + L1_Mus1 LINE L1 380 3402 -2481 2 941 5602 95 97 6 chr1 46733095 46733914 -150461518 + RLTR13B1 LTR ERVK 1 893 0 2 941 28183 120 7 6 chr1 46733914 46735246 -150460186 + L1_Mus1 LINE L1 3403 4733 -1150 2 941 207 0 0 0 chr1 46735246 46735269 -150460163 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2 941 28183 95 4 3 chr1 46735269 46737110 -150458322 + L1_Mus1 LINE L1 4734 6567 0 2 941 333 217 14 0 chr1 46738040 46738109 -150457323 + ID4 SINE ID 4 73 -10 2 941 709 268 18 85 chr1 46738127 46738351 -150457081 + B4 SINE B4 2 210 -82 2 941 1809 187 24 78 chr1 46739366 46739749 -150455683 + RLTR11A2 LTR ERVK 1 362 -165 2 941 26 0 0 0 chr1 46739755 46739781 -150455651 + AT_rich Low_complexity Low_complexity 1 26 0 2 941 840 152 11 17 chr1 46739788 46739968 -150455464 + G-rich Low_complexity Low_complexity 1 179 0 2 941 403 231 0 13 chr1 46739968 46740047 -150455385 + polypurine Low_complexity Low_complexity 2 79 0 2 941 556 218 14 34 chr1 46740050 46740197 -150455235 - RMER17A-int LTR ERVK -1580 148 5 2 941 1968 113 57 21 chr1 46740216 46740551 -150454881 - RMER17A2 LTR ERVK -559 347 1 2 941 985 194 35 3 chr1 46740671 46740921 -150454511 - L1MA5 LINE L1 -351 5949 5620 2 941 312 223 331 0 chr1 46740924 46741063 -150454369 + Lx9 LINE L1 7145 7329 -315 2 941 919 32 8 16 chr1 46741201 46741329 -150454103 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 2 941 21 0 0 0 chr1 46741811 46741832 -150453600 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 221 237 34 0 chr1 46741844 46741903 -150453529 - ID SINE ID -162 62 2 2 941 420 20 0 0 chr1 46743328 46743377 -150452055 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 941 573 124 0 0 chr1 46743540 46743637 -150451795 + (CATAC)n Simple_repeat Simple_repeat 5 101 0 2 941 340 306 115 29 chr1 46743666 46743875 -150451557 + L1MC4 LINE L1 6871 7097 -945 2 941 250 235 131 25 chr1 46744356 46744478 -150450954 + L1MC4 LINE L1 7337 7471 -571 2 941 275 85 21 0 chr1 46744679 46744726 -150450706 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 941 657 244 137 121 chr1 46745099 46745472 -150449960 + MTE2a LTR MaLR 1 379 0 2 941 2317 163 0 0 chr1 46748142 46748578 -150446854 - L1_Mur1 LINE L1 -854 5032 4597 2 941 501 351 0 0 chr1 46748980 46749114 -150446318 + RSINE1 SINE B4 3 136 -29 2 941 3648 42 9 4 chr1 46749195 46749655 -150445777 - L1Md_F2 LINE L1 -1 6581 6120 2 941 2426 17 0 0 chr1 46749657 46749948 -150445484 - L1Md_F2 LINE L1 -638 5944 5654 2 941 379 387 21 10 chr1 46750365 46750558 -150444874 - L1MC LINE L1 -1219 4927 4733 2 941 3561 193 34 13 chr1 46750575 46751274 -150444158 - RMER6D LTR ERVK -6 714 1 2 941 23 33 0 0 chr1 46751330 46751360 -150444072 + AT_rich Low_complexity Low_complexity 1 30 0 2 941 1497 58 0 0 chr1 46751541 46751732 -150443700 + L1_Mus1 LINE L1 6377 6567 0 2 941 652 212 5 40 chr1 46751829 46752118 -150443314 + A-rich Low_complexity Low_complexity 1 278 0 2 941 1015 55 0 67 chr1 46752118 46752311 -150443121 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 941 376 240 5 63 chr1 46752311 46752398 -150443034 + A-rich Low_complexity Low_complexity 95 180 0 2 941 222 333 0 0 chr1 46752450 46752561 -150442871 + A-rich Low_complexity Low_complexity 61 171 0 2 941 212 131 84 69 chr1 46752547 46752678 -150442754 + GA-rich Low_complexity Low_complexity 3 135 0 2 941 829 170 34 28 chr1 46752745 46753431 -150442001 + GA-rich Low_complexity Low_complexity 1 690 0 2 941 1323 23 17 11 chr1 46753453 46753628 -150441804 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 2 941 390 254 65 11 chr1 46753695 46753892 -150441540 - L1MC LINE L1 -1824 4322 4109 2 941 616 179 130 0 chr1 46754024 46754147 -150441285 + MTC LTR MaLR 21 159 -262 2 941 584 202 65 0 chr1 46754151 46754275 -150441157 + MTC LTR MaLR 288 419 0 2 941 756 197 7 0 chr1 46754275 46754412 -150441020 + MTC-int LTR MaLR 1 138 -1120 2 941 1871 171 43 6 chr1 46754392 46754740 -150440692 - ORR1A4-int LTR MaLR -1602 361 1 2 941 1557 161 52 106 chr1 46754740 46755088 -150440344 - ORR1A4 LTR MaLR 0 329 1 2 941 2913 200 27 24 chr1 46755431 46755516 -150439916 - RLTR20B1 LTR ERVK -8 555 472 2 941 339 25 0 0 chr1 46755516 46755556 -150439876 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 941 2913 200 27 24 chr1 46755556 46756023 -150439409 - RLTR20B1 LTR ERVK -92 471 2 2 941 2185 117 6 44 chr1 46756041 46756381 -150439051 - ORR1A2 LTR MaLR 0 327 1 2 941 1113 269 151 82 chr1 46756391 46756871 -150438561 - RMER4B LTR ERVK -9 576 58 2 941 423 0 0 0 chr1 46756871 46756918 -150438514 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 941 1113 269 151 82 chr1 46756918 46756947 -150438485 - RMER4B LTR ERVK -528 57 32 2 941 7982 24 1 0 chr1 46756947 46758526 -150436906 - L1Md_T LINE L1 -19 6563 4983 2 941 37083 33 10 6 chr1 46758526 46765084 -150430348 - L1Md_T LINE L1 0 6582 34 2 941 309 167 0 0 chr1 46765127 46765205 -150430227 + A-rich Low_complexity Low_complexity 1 78 0 2 941 238 111 114 100 chr1 46765206 46765276 -150430156 - RMER4B LTR ERVK -514 71 1 2 941 14882 139 29 16 chr1 46765421 46767257 -150428175 - L1_Mur2 LINE L1 -578 5299 3473 2 941 219 103 0 0 chr1 46767257 46767296 -150428136 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 941 14882 139 29 16 chr1 46767296 46767947 -150427485 - L1_Mur2 LINE L1 -2405 3472 2786 2 941 230 56 28 0 chr1 46767947 46767983 -150427449 + (TTG)n Simple_repeat Simple_repeat 1 37 0 2 941 14882 139 29 16 chr1 46767983 46768322 -150427110 - L1_Mur2 LINE L1 -3092 2785 2435 2 941 3339 138 116 8 chr1 46768335 46768417 -150427015 + L1_Mus3 LINE L1 5156 5238 -645 2 941 4520 86 13 11 chr1 46768417 46769041 -150426391 + L1_Mus1 LINE L1 5943 6567 0 2 941 4216 123 115 11 chr1 46769041 46770306 -150425126 + L1_Mus3 LINE L1 5239 6638 0 2 941 287 300 61 43 chr1 46770397 46770512 -150424920 - L2c LINE L2 -224 3163 3047 2 941 359 259 29 51 chr1 46771378 46771553 -150423879 + GA-rich Low_complexity Low_complexity 4 174 0 2 941 1984 236 67 37 chr1 46771692 46772592 -150422840 + L1Md_F LINE L1 153 1026 -5511 2 941 5044 132 37 2 chr1 46772595 46773454 -150421978 + L1_Mus2 LINE L1 279 1167 -5449 2 941 16055 100 7 0 chr1 46773444 46774082 -150421350 + L1_Mus2 LINE L1 1336 1981 -3902 2 941 666 68 0 0 chr1 46774082 46774170 -150421262 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 941 16055 100 7 0 chr1 46774170 46776039 -150419393 + L1_Mus2 LINE L1 1982 3860 -2023 2 941 2527 97 10 0 chr1 46776039 46776429 -150419003 + L1_Mus2 LINE L1 4910 5303 -580 2 941 24106 70 3 4 chr1 46776431 46780636 -150414796 + L1Md_Gf LINE L1 285 4578 -1308 2 941 6365 91 4 2 chr1 46780634 46781546 -150413886 + L1_Mus2 LINE L1 5653 6566 0 2 941 736 158 14 61 chr1 46782162 46782310 -150413122 - B1_Mur4 SINE Alu -9 141 1 2 941 338 223 168 16 chr1 46783109 46783300 -150412132 - L1MA6 LINE L1 -10 6290 6071 2 941 30 0 0 0 chr1 46783833 46783863 -150411569 + AT_rich Low_complexity Low_complexity 1 30 0 2 941 882 145 14 0 chr1 46784242 46784387 -150411045 + B1_Mm SINE Alu 1 147 0 2 941 934 33 8 8 chr1 46784499 46784622 -150410810 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 941 267 259 43 167 chr1 46784841 46785003 -150410429 + Charlie15a DNA MER1_type 78 219 -5 2 941 8134 33 1 0 chr1 46785541 46786563 -150408869 - L1Md_T LINE L1 -2 6580 5553 2 941 27 0 0 0 chr1 46787251 46787278 -150408154 + AT_rich Low_complexity Low_complexity 1 27 0 2 941 180 122 119 24 chr1 46787924 46787966 -150407466 - L3 LINE CR1 -196 4293 4248 2 941 7230 69 11 1 chr1 46788013 46789389 -150406043 - L1_Mus1 LINE L1 -1 6566 5177 2 941 513 0 0 0 chr1 46789417 46789474 -150405958 + (TTAGGG)n Simple_repeat Simple_repeat 2 58 0 2 941 242 73 0 24 chr1 46790266 46790308 -150405124 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 2 941 1642 201 66 97 chr1 46791343 46791888 -150403544 - RLTR11A LTR ERVK 0 528 1 3 941 206 293 17 0 chr1 46792487 46792545 -150402887 + CT-rich Low_complexity Low_complexity 3 61 0 3 941 189 107 0 0 chr1 46792552 46792580 -150402852 + (TCC)n Simple_repeat Simple_repeat 3 30 0 3 117 621 274 91 81 chr1 46792598 46793534 -150401898 - L1MA4A LINE L1 -476 5827 4834 3 942 198 0 0 0 chr1 46793534 46793556 -150401876 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 942 349 300 115 62 chr1 46793556 46793634 -150401798 - L1MA4A LINE L1 -1270 4873 4783 3 942 308 299 118 15 chr1 46794267 46794403 -150401029 + MER5B DNA MER1_type 2 151 -27 3 942 2319 144 55 35 chr1 46794916 46795368 -150400064 + RMER6B LTR ERVK 1 461 0 3 942 294 29 0 0 chr1 46796668 46796703 -150398729 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 942 690 169 27 75 chr1 46796704 46796851 -150398581 - B3 SINE B2 -76 140 1 3 942 2915 142 30 32 chr1 46797921 46798327 -150397105 + RLTR28 LTR ERVL 1 402 -122 3 942 198 0 0 0 chr1 46798327 46798349 -150397083 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 942 2915 142 30 32 chr1 46798349 46798467 -150396965 + RLTR28 LTR ERVL 403 524 0 3 942 2186 133 20 44 chr1 46798771 46799179 -150396253 - RMER10B LTR ERVL 0 398 1 3 942 204 366 42 0 chr1 46799394 46799465 -150395967 + L2b LINE L2 3235 3308 -67 3 942 527 263 115 41 chr1 46799552 46799770 -150395662 - B4A SINE B4 -51 241 8 3 942 445 130 90 13 chr1 46799853 46799931 -150395501 + B1_Mur2 SINE Alu 45 128 -21 3 942 606 63 0 0 chr1 46799932 46800011 -150395421 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 3 942 518 109 73 0 chr1 46800014 46800151 -150395281 + GA-rich Low_complexity Low_complexity 4 150 0 3 942 332 269 470 27 chr1 46800187 46800463 -150394969 + HAL1-3A_ME LINE L1 2073 2439 -419 3 942 219 36 0 0 chr1 46800485 46800513 -150394919 + (GAGAA)n Simple_repeat Simple_repeat 5 32 0 3 942 240 35 0 0 chr1 46800707 46800736 -150394696 + (T)n Simple_repeat Simple_repeat 1 29 0 3 942 378 304 112 4 chr1 46801013 46801290 -150394142 - L1ME3A LINE L1 -54 6119 5813 3 942 760 262 223 42 chr1 46801303 46801790 -150393642 - MER67C LTR ERV1 0 711 137 3 942 567 212 60 8 chr1 46801832 46801965 -150393467 + RSINE1 SINE B4 19 158 -7 3 942 441 0 0 0 chr1 46801968 46802017 -150393415 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 942 316 197 118 66 chr1 46802033 46802169 -150393263 - MER67C LTR ERV1 -568 143 1 3 942 1619 212 115 62 chr1 46803208 46803742 -150391690 + RLTR20B3 LTR ERVK 14 550 -27 3 942 670 139 107 15 chr1 46804164 46804295 -150391137 + MTC LTR MaLR 1 143 -278 3 942 273 75 0 0 chr1 46804923 46804963 -150390469 + (T)n Simple_repeat Simple_repeat 1 40 0 3 942 382 295 67 0 chr1 46806131 46806236 -150389196 + B1F SINE Alu 1 112 -37 3 942 213 65 0 0 chr1 46806257 46806288 -150389144 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 942 335 189 0 51 chr1 46807243 46807320 -150388112 - RMER10A LTR ERVL 0 442 370 3 942 1829 145 47 0 chr1 46807320 46807616 -150387816 + ORR1A4 LTR MaLR 1 310 -19 3 942 2916 154 12 12 chr1 46807652 46808137 -150387295 + ORR1A4-int LTR MaLR 1 485 -1478 3 942 829 47 315 0 chr1 46808137 46808286 -150387146 + L1Md_F2 LINE L1 6365 6560 -22 3 942 35154 30 2 8 chr1 46808287 46813485 -150381947 + L1Md_A LINE L1 422 5585 -298 3 942 8425 34 0 0 chr1 46813486 46814482 -150380950 + L1Md_A LINE L1 5587 6582 0 3 942 7661 138 35 129 chr1 46814483 46816176 -150379256 + ORR1A4-int LTR MaLR 429 1962 -1 3 942 1876 165 3 49 chr1 46816177 46816522 -150378910 + ORR1A4 LTR MaLR 1 329 0 3 942 376 222 91 18 chr1 46818134 46818244 -150377188 + ORSL DNA Tip100 158 275 0 3 942 21 57 0 0 chr1 46818517 46818552 -150376880 + AT_rich Low_complexity Low_complexity 1 35 0 3 942 857 27 18 0 chr1 46819408 46819519 -150375913 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 3 942 1369 151 4 22 chr1 46819617 46819847 -150375585 + URR1A DNA MER1_type 1 226 0 3 942 339 25 0 0 chr1 46820916 46820956 -150374476 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 942 254 95 24 0 chr1 46821056 46821098 -150374334 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 3 942 294 254 59 76 chr1 46821129 46821248 -150374184 + RSINE1 SINE B4 48 164 -1 3 942 186 167 0 0 chr1 46821248 46821284 -150374148 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 942 405 155 0 0 chr1 46823024 46823095 -150372337 + Lx9 LINE L1 7293 7363 -281 3 942 253 337 69 0 chr1 46823235 46823336 -150372096 - PB1D10 SINE Alu -5 112 5 3 942 455 147 13 0 chr1 46823818 46823893 -150371539 + 4.5SRNA scRNA scRNA 4 79 -15 3 942 192 329 83 26 chr1 46824627 46824783 -150370649 - L2 LINE L2 -589 2830 2666 3 942 1952 140 29 38 chr1 46824985 46825326 -150370106 + ORR1A1 LTR MaLR 1 338 -8 3 942 21 0 0 0 chr1 46825683 46825704 -150369728 + AT_rich Low_complexity Low_complexity 1 21 0 3 942 261 0 0 0 chr1 46826191 46826220 -150369212 + (A)n Simple_repeat Simple_repeat 1 29 0 3 942 29 0 0 0 chr1 46827244 46827273 -150368159 + AT_rich Low_complexity Low_complexity 1 29 0 3 942 180 0 0 0 chr1 46827808 46827828 -150367604 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 942 414 0 0 0 chr1 46827828 46827873 -150367559 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 942 216 229 33 0 chr1 46828387 46828448 -150366984 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 3 942 297 0 0 0 chr1 46828456 46828489 -150366943 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 942 609 299 36 50 chr1 46828492 46828714 -150366718 - MER2 DNA MER2_type 0 345 127 3 942 462 18 0 0 chr1 46828811 46828866 -150366566 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 942 338 299 231 0 chr1 46828957 46829091 -150366341 - Charlie12 DNA MER1_type -2700 173 9 3 942 211 213 33 0 chr1 46829302 46829363 -150366069 - ID4 SINE ID -6 77 15 3 942 314 45 23 0 chr1 46829521 46829565 -150365867 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 3 942 355 338 155 24 chr1 46829882 46830151 -150365281 - L1MC4 LINE L1 -1005 7037 6700 3 942 577 252 0 52 chr1 46830151 46830306 -150365126 + B1_Mur2 SINE Alu 1 147 -2 3 942 342 348 190 23 chr1 46830306 46830545 -150364887 - L1MC4 LINE L1 -1183 6699 6421 3 942 233 385 40 53 chr1 46830733 46830958 -150364474 - LTR78 LTR ERV1 -136 1168 947 3 942 533 190 70 0 chr1 46832642 46832742 -150362690 - PB1D9 SINE Alu -8 112 6 3 942 261 273 242 24 chr1 46832742 46832766 -150362666 - B4 SINE B4 -74 218 68 3 942 292 327 35 17 chr1 46832772 46832808 -150362624 - B1F SINE Alu 0 149 33 3 942 292 291 13 0 chr1 46832808 46832887 -150362545 - ID_B1 SINE B4 -31 193 114 3 942 409 294 94 64 chr1 46833016 46833249 -150362183 + BLACKJACK DNA AcHobo 1686 1925 -1019 3 942 513 243 42 26 chr1 46833527 46833717 -150361715 + L1MC LINE L1 3812 4004 -2142 3 942 1100 131 91 0 chr1 46833723 46833898 -150361534 - ORR1C2 LTR MaLR -3 381 191 3 942 22 56 0 0 chr1 46835511 46835547 -150359885 + AT_rich Low_complexity Low_complexity 1 36 0 3 942 617 230 222 12 chr1 46835612 46835779 -150359653 - B3 SINE B2 -10 206 5 3 942 848 121 15 0 chr1 46836031 46836163 -150359269 + B1_Mus2 SINE Alu 14 147 0 3 942 231 103 0 0 chr1 46836178 46836217 -150359215 + (A)n Simple_repeat Simple_repeat 1 39 0 3 942 270 0 0 0 chr1 46836313 46836343 -150359089 + (A)n Simple_repeat Simple_repeat 1 30 0 3 942 225 0 0 0 chr1 46836576 46836601 -150358831 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 3 942 302 307 112 42 chr1 46836730 46836971 -150358461 + Tigger13a DNA MER2_type 311 568 -203 3 942 25 0 0 0 chr1 46837288 46837313 -150358119 + AT_rich Low_complexity Low_complexity 1 25 0 3 942 1018 94 132 0 chr1 46837979 46838138 -150357294 - B2_Mm2 SINE B2 -14 181 2 3 942 220 143 40 20 chr1 46838738 46838788 -150356644 - MIR SINE MIR -124 138 88 3 942 1492 136 98 7 chr1 46839563 46839837 -150355595 + Lx3C LINE L1 6574 6872 -104 3 942 540 56 0 0 chr1 46839890 46839962 -150355470 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 942 1011 161 0 0 chr1 46840199 46840379 -150355053 + CT-rich Low_complexity Low_complexity 1 180 0 3 942 188 286 105 53 chr1 46841569 46841702 -150353730 - L2a LINE L2 -80 3346 3207 3 942 234 303 0 0 chr1 46841805 46841871 -150353561 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 942 750 273 13 23 chr1 46841880 46842078 -150353354 - B3A SINE B2 -12 204 8 3 942 267 332 215 29 chr1 46842310 46842326 -150353106 - L2a LINE L2 -471 2948 2927 3 942 644 0 13 0 chr1 46842326 46842402 -150353030 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 942 267 332 215 29 chr1 46842402 46842766 -150352666 - L2a LINE L2 -493 2926 2494 3 942 1644 31 0 0 chr1 46842766 46842959 -150352473 + B2_Mm1t SINE B2 1 193 0 3 942 267 332 215 29 chr1 46842959 46843089 -150352343 - L2a LINE L2 -926 2493 2343 3 942 21 71 0 0 chr1 46843546 46843588 -150351844 + AT_rich Low_complexity Low_complexity 1 42 0 3 942 2222 19 0 0 chr1 46843739 46844002 -150351430 + L1Md_F2 LINE L1 5324 5586 -297 3 942 7754 57 8 3 chr1 46844002 46844993 -150350439 + L1Md_F2 LINE L1 5587 6582 0 3 942 253 278 10 20 chr1 46846127 46846226 -150349206 + L1M5 LINE L1 2779 2876 -3270 3 942 788 164 114 0 chr1 46846261 46846480 -150348952 + Lx9 LINE L1 7372 7615 -29 3 942 651 60 0 0 chr1 46846552 46846636 -150348796 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 3 942 236 100 25 0 chr1 46847564 46847604 -150347828 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 942 180 0 0 0 chr1 46848044 46848064 -150347368 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 942 22 35 0 0 chr1 46848106 46848135 -150347297 + AT_rich Low_complexity Low_complexity 1 29 0 3 942 411 21 0 0 chr1 46848905 46848953 -150346479 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 942 372 267 70 114 chr1 46849335 46849449 -150345983 + B1F SINE Alu 1 109 -40 3 942 222 160 0 0 chr1 46850870 46850920 -150344512 + GA-rich Low_complexity Low_complexity 2 51 0 3 942 623 272 158 50 chr1 46850952 46851192 -150344240 - B4A SINE B4 -3 289 24 3 942 613 267 18 12 chr1 46851317 46851480 -150343952 + RSINE1 SINE B4 2 165 0 3 942 522 340 147 16 chr1 46852117 46852682 -150342750 + L2 LINE L2 1754 2392 -1027 3 942 498 33 0 0 chr1 46852768 46852828 -150342604 + (TCC)n Simple_repeat Simple_repeat 1 60 0 4 942 216 67 0 0 chr1 46852828 46852858 -150342574 + (CCA)n Simple_repeat Simple_repeat 2 31 0 4 942 204 303 126 18 chr1 46853622 46853733 -150341699 - MIRb SINE MIR -76 192 70 4 942 25 0 0 0 chr1 46854335 46854360 -150341072 + AT_rich Low_complexity Low_complexity 1 25 0 4 942 663 306 101 40 chr1 46855198 46855717 -150339715 + MER82 DNA MER2_type 1 600 -53 4 942 788 126 0 0 chr1 46856794 46856913 -150338519 - L1Md_F2 LINE L1 -377 6205 6087 4 942 4998 70 0 19 chr1 46857002 46857672 -150337760 + L1Md_F2 LINE L1 5913 6569 -13 4 942 256 360 54 0 chr1 46857704 46857982 -150337450 - L1M2 LINE L1 -1240 5924 5632 4 942 277 257 98 10 chr1 46858284 46858386 -150337046 + Lx8 LINE L1 7219 7329 -144 4 942 3160 56 2 12 chr1 46858617 46859017 -150336415 - MTA_Mm LTR MaLR 0 396 1 4 942 994 277 58 6 chr1 46859130 46859610 -150335822 - L1M2 LINE L1 -3475 3689 3185 4 942 230 333 60 14 chr1 46859706 46859922 -150335510 - L1M2 LINE L1 -4096 3072 2847 4 942 369 272 57 11 chr1 46860248 46860423 -150335009 - L1M2 LINE L1 -4341 2827 2645 4 942 325 293 180 55 chr1 46860423 46860679 -150334753 + B4A SINE B4 5 292 0 4 942 183 80 0 0 chr1 46860913 46860938 -150334494 + (T)n Simple_repeat Simple_repeat 1 25 0 4 942 482 176 35 0 chr1 46861028 46861113 -150334319 - B2_Mm1t SINE B2 -85 108 21 4 942 363 210 0 37 chr1 46861114 46861195 -150334237 - PB1D7 SINE Alu 0 120 43 4 942 325 284 68 86 chr1 46861200 46861281 -150334151 - L1M2 LINE L1 -4978 2190 2124 4 942 834 248 50 41 chr1 46861281 46861500 -150333932 - ID_B1 SINE B4 -3 221 1 4 942 325 292 65 86 chr1 46861500 46861819 -150333613 - L1M2 LINE L1 -5045 2123 1802 4 942 21 0 0 0 chr1 46864496 46864517 -150330915 + AT_rich Low_complexity Low_complexity 1 21 0 4 942 21 57 0 0 chr1 46866450 46866485 -150328947 + AT_rich Low_complexity Low_complexity 1 35 0 4 942 222 128 0 0 chr1 46867375 46867414 -150328018 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 942 230 245 20 0 chr1 46867426 46867475 -150327957 - MamRep38 DNA hAT -57 238 189 4 942 485 244 89 0 chr1 46869244 46869379 -150326053 + B1_Mus2 SINE Alu 1 147 0 4 942 180 97 0 0 chr1 46869579 46869610 -150325822 + (A)n Simple_repeat Simple_repeat 1 31 0 4 942 860 242 101 56 chr1 46870236 46870503 -150324929 - MTD LTR MaLR -9 410 132 4 942 495 187 44 0 chr1 46870504 46870595 -150324837 + B1_Mus2 SINE Alu 48 142 -5 4 942 349 218 188 0 chr1 46870611 46870712 -150324720 - MTD LTR MaLR -301 120 1 4 942 2642 55 0 0 chr1 46871399 46871727 -150323705 - L1Md_T LINE L1 0 6582 6255 4 942 231 325 89 36 chr1 46871944 46871993 -150323439 - L1ME1 LINE L1 -239 5940 5896 4 942 1184 110 10 45 chr1 46871993 46872193 -150323239 - B2_Mm2 SINE B2 -1 194 2 4 942 231 325 89 36 chr1 46872193 46872424 -150323008 - L1ME1 LINE L1 -284 5895 5645 4 942 828 264 14 0 chr1 46873171 46873383 -150322049 + B3 SINE B2 2 216 0 4 942 450 268 42 14 chr1 46873612 46873756 -150321676 + B1_Mur2 SINE Alu 2 149 0 4 942 197 33 33 0 chr1 46874476 46874506 -150320926 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 942 1137 70 0 48 chr1 46874507 46874673 -150320759 - B2_Mm2 SINE B2 -37 158 1 4 942 780 94 145 0 chr1 46875281 46875398 -150320034 + B1_Mus1 SINE Alu 1 134 -14 4 942 210 139 0 0 chr1 46875400 46875436 -150319996 + (G)n Simple_repeat Simple_repeat 1 36 0 4 942 275 293 69 29 chr1 46876872 46876883 -150318549 + ID_B1 SINE B4 70 92 -200 4 942 302 273 15 0 chr1 46876883 46876949 -150318483 + PB1D10 SINE Alu 3 69 -48 4 942 275 293 69 29 chr1 46876949 46876994 -150318438 + ID_B1 SINE B4 93 200 -92 4 942 559 209 0 28 chr1 46877040 46877148 -150318284 - PB1D10 SINE Alu -11 106 2 4 942 231 36 0 0 chr1 46877501 46877529 -150317903 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 942 325 221 118 0 chr1 46877651 46877719 -150317713 - RSINE1 SINE B4 -87 78 3 4 942 180 254 16 33 chr1 46878399 46878460 -150316972 + L3 LINE CR1 53 112 -4377 4 942 384 233 289 55 chr1 46878673 46878889 -150316543 - B4 SINE B4 -21 271 5 4 942 529 292 201 11 chr1 46878947 46879590 -150315842 - L1MA5 LINE L1 -27 6273 5509 4 942 215 354 46 0 chr1 46879670 46879735 -150315697 - ID4_ SINE ID -7 76 9 4 942 267 279 112 10 chr1 46879831 46880037 -150315395 - L1MA6 LINE L1 -10 6290 6064 4 942 906 243 101 17 chr1 46880041 46880389 -150315043 - L1MA6 LINE L1 -439 5861 5485 4 942 259 247 202 27 chr1 46880426 46880609 -150314823 - L1MA6 LINE L1 -825 5318 5104 4 942 32 0 0 0 chr1 46880620 46880652 -150314780 + AT_rich Low_complexity Low_complexity 1 32 0 4 942 454 272 52 30 chr1 46880753 46880984 -150314448 - L1MA6 LINE L1 -1379 4761 4526 4 942 402 338 110 28 chr1 46881079 46881405 -150314027 - L1MA6 LINE L1 -1827 4316 3964 4 942 186 280 133 0 chr1 46882023 46882098 -150313334 - MIR3 SINE MIR -118 90 6 4 942 302 249 96 10 chr1 46883244 46883385 -150312047 - L1MA4 LINE L1 -12 6291 6142 4 942 994 244 92 33 chr1 46884526 46885069 -150310363 + L1M4c LINE L1 982 1556 -4828 4 942 313 271 46 18 chr1 46885079 46885188 -150310244 - L1MA6 LINE L1 -2398 3742 3631 4 942 444 267 24 29 chr1 46885213 46885383 -150310049 + L1MB2 LINE L1 5976 6144 -27 4 942 272 182 107 18 chr1 46885834 46885890 -150309542 + 4.5SRNA scRNA scRNA 26 86 -8 4 942 806 67 0 0 chr1 46885844 46885948 -150309484 + B1_Mus2 SINE Alu 44 147 0 4 942 859 191 79 5 chr1 46886085 46886274 -150309158 + B3 SINE B2 4 206 -10 4 942 364 287 18 18 chr1 46887902 46888012 -150307420 - PB1D10 SINE Alu -7 110 1 4 942 270 125 0 0 chr1 46890041 46890089 -150305343 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 942 195 129 0 0 chr1 46890210 46890241 -150305191 + (A)n Simple_repeat Simple_repeat 1 31 0 4 942 1235 101 21 16 chr1 46890343 46890534 -150304898 + B2_Mm2 SINE B2 4 195 0 4 942 528 214 0 0 chr1 46890534 46890651 -150304781 + GA-rich Low_complexity Low_complexity 2 118 0 4 942 1749 53 0 13 chr1 46893394 46893622 -150301810 + L1Md_F2 LINE L1 6356 6580 -2 4 942 25 0 0 0 chr1 46893622 46893647 -150301785 + AT_rich Low_complexity Low_complexity 1 25 0 4 942 480 349 7 32 chr1 46893647 46893801 -150301631 + B3A SINE B2 36 185 -13 4 942 321 270 216 3 chr1 46893937 46894247 -150301185 + L1M5 LINE L1 4317 4692 -1454 4 942 22 35 0 0 chr1 46894277 46894306 -150301126 + AT_rich Low_complexity Low_complexity 1 29 0 4 942 595 293 32 5 chr1 46894500 46894689 -150300743 - MER3 DNA MER1_type -10 199 6 4 942 420 266 23 24 chr1 46894815 46894943 -150300489 - MER33 DNA MER1_type -204 120 1 4 942 599 185 83 15 chr1 46895309 46895441 -150299991 + B1_Mur4 SINE Alu 2 142 -8 4 942 232 301 126 49 chr1 46895750 46895893 -150299539 + MER5A DNA MER1_type 28 181 -8 4 942 468 272 163 55 chr1 46896128 46896330 -150299102 + MLT1C LTR MaLR 242 465 -2 4 942 3223 47 2 2 chr1 46897649 46898056 -150297376 + L1Md_F2 LINE L1 6174 6580 -2 4 942 249 200 0 0 chr1 46898732 46898787 -150296645 + A-rich Low_complexity Low_complexity 1 55 0 4 942 332 302 100 7 chr1 46898816 46898966 -150296466 - L1MC4a LINE L1 0 7882 7719 4 942 363 78 0 0 chr1 46900586 46900637 -150294795 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 942 26 0 0 0 chr1 46900663 46900689 -150294743 + AT_rich Low_complexity Low_complexity 1 26 0 4 942 302 286 57 64 chr1 46901323 46901480 -150293952 - Tigger10 DNA Tigger -1185 658 503 4 942 558 256 25 8 chr1 46903502 46903620 -150291812 + B1F SINE Alu 17 136 -13 4 942 388 197 66 0 chr1 46903635 46903711 -150291721 + ID4 SINE ID 1 81 -2 4 942 25 31 0 0 chr1 46903998 46904030 -150291402 + AT_rich Low_complexity Low_complexity 1 32 0 4 942 234 165 45 45 chr1 46904091 46904180 -150291252 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 942 228 200 0 0 chr1 46904188 46904238 -150291194 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 4 942 441 179 0 0 chr1 46905739 46905823 -150289609 + GA-rich Low_complexity Low_complexity 2 85 0 4 942 181 325 49 12 chr1 46907617 46907698 -150287734 - MIRb SINE MIR -151 117 34 4 942 486 0 0 0 chr1 46907827 46907881 -150287551 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 942 203 324 232 6 chr1 46911538 46911715 -150283717 - MIR SINE MIR -24 238 22 4 942 480 18 0 0 chr1 46912067 46912124 -150283308 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 942 246 407 44 44 chr1 46912191 46912371 -150283061 - MamRep38 DNA hAT 0 295 116 4 942 664 291 15 33 chr1 46914033 46914245 -150281187 + B3 SINE B2 10 209 -7 4 942 207 250 33 16 chr1 46914742 46914803 -150280629 - MIRb SINE MIR -189 79 18 4 942 842 294 79 15 chr1 46914825 46915091 -150280341 + B4 SINE B4 1 283 -9 4 942 2378 163 68 66 chr1 46915405 46915932 -150279500 + RLTR11A LTR ERVK 1 528 0 4 942 329 326 166 24 chr1 46916234 46916497 -150278935 - L2c LINE L2 -24 3402 3078 4 942 247 183 39 0 chr1 46916581 46916685 -150278747 + (TCTG)n Simple_repeat Simple_repeat 1 108 0 4 942 250 284 27 81 chr1 46916855 46916966 -150278466 + MLT1E2 LTR MaLR 1 105 -522 4 942 574 246 55 8 chr1 46917049 46917176 -150278256 + RSINE1 SINE B4 9 141 -24 4 942 310 247 0 85 chr1 46917349 46917455 -150277977 + MLT1E2 LTR MaLR 527 623 -4 4 942 552 258 54 59 chr1 46917649 46917871 -150277561 + L1MB4 LINE L1 5832 6052 -128 4 942 421 223 85 0 chr1 46918019 46918113 -150277319 - B1F SINE Alu -2 147 46 4 942 400 312 120 31 chr1 46918113 46918211 -150277221 - ID_B1 SINE B4 -2 222 14 4 942 246 105 0 0 chr1 46918237 46918275 -150277157 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 942 510 270 29 0 chr1 46918285 46918422 -150277010 + B1_Mur2 SINE Alu 2 142 -7 4 942 822 123 0 0 chr1 46918426 46918556 -150276876 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 4 942 622 35 12 12 chr1 46918740 46918826 -150276606 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 942 499 299 136 0 chr1 46918826 46918980 -150276452 - B4 SINE B4 -22 270 96 4 942 541 277 0 0 chr1 46919012 46919131 -150276301 - B4 SINE B4 -163 129 11 4 942 243 261 15 0 chr1 46920713 46920778 -150274654 + ID4_ SINE ID 1 66 -17 4 942 297 293 26 23 chr1 46920861 46920987 -150274445 - MLT1A1 LTR MaLR -21 353 227 4 942 212 297 0 119 chr1 46921444 46921528 -150273904 - AluG_3 SINE Alu -94 217 144 5 942 549 238 137 18 chr1 46921781 46922019 -150273413 + MER33 DNA MER1_type 8 251 -73 5 942 702 290 93 5 chr1 46923286 46923705 -150271727 + L1MC3 LINE L1 6873 7328 -457 5 943 1047 45 0 0 chr1 46923790 46923923 -150271509 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 943 478 264 18 9 chr1 46924084 46924195 -150271237 + B1_Mur1 SINE Alu 38 149 0 5 943 323 345 0 0 chr1 46924212 46924296 -150271136 + AluG_3 SINE Alu 137 220 -91 5 943 597 85 28 0 chr1 46924338 46924444 -150270988 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 5 943 573 55 0 0 chr1 46924532 46924605 -150270827 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 943 189 0 0 0 chr1 46924605 46924625 -150270807 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 943 1114 52 0 0 chr1 46924625 46924759 -150270673 - B1_Mm SINE Alu -9 138 5 5 943 24 32 0 0 chr1 46924859 46924890 -150270542 + AT_rich Low_complexity Low_complexity 1 31 0 5 943 338 339 0 0 chr1 46925957 46926066 -150269366 - Charlie1a DNA MER1_type -1 1454 1346 5 943 459 266 38 30 chr1 46926114 46926246 -150269186 + B1F SINE Alu 14 146 -3 5 943 280 176 0 29 chr1 46926255 46926325 -150269107 + GA-rich Low_complexity Low_complexity 3 70 0 5 943 2044 276 63 20 chr1 46926413 46927116 -150268316 - Charlie1a DNA MER1_type -296 1159 427 5 943 241 376 146 5 chr1 46927167 46927373 -150268059 - Charlie1a DNA MER1_type -1204 251 17 5 943 234 367 134 32 chr1 46927568 46927754 -150267678 + MLT1L LTR MaLR 394 598 -12 5 943 324 289 47 40 chr1 46928134 46928282 -150267150 + B1F1 SINE Alu 1 149 0 5 943 267 236 0 0 chr1 46928285 46928340 -150267092 + ID4 SINE ID 2 56 -27 5 943 200 61 61 0 chr1 46928654 46928687 -150266745 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 943 1273 94 11 0 chr1 46928753 46928944 -150266488 + L1_Mus3 LINE L1 6444 6636 -2 5 943 294 87 0 0 chr1 46929788 46929834 -150265598 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 943 450 0 0 0 chr1 46929835 46929885 -150265547 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 943 519 196 0 0 chr1 46929933 46930091 -150265341 + (CA)n Simple_repeat Simple_repeat 1 158 0 5 943 325 328 56 39 chr1 46930856 46931034 -150264398 - ORR1E LTR MaLR -178 181 1 5 943 249 83 0 0 chr1 46931233 46931269 -150264163 + (T)n Simple_repeat Simple_repeat 1 36 0 5 943 260 336 85 15 chr1 46931376 46931506 -150263926 + L2a LINE L2 3287 3425 -1 5 943 22 0 0 0 chr1 46932890 46932912 -150262520 + AT_rich Low_complexity Low_complexity 1 22 0 5 943 270 0 0 0 chr1 46933469 46933499 -150261933 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 5 943 687 215 0 0 chr1 46933499 46933629 -150261803 - B1_Mur2 SINE Alu -15 134 5 5 943 351 0 0 0 chr1 46934204 46934243 -150261189 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 943 403 225 0 0 chr1 46934269 46934340 -150261092 - ID4 SINE ID -11 72 2 5 943 386 278 16 134 chr1 46936495 46936594 -150258838 + ID_B1 SINE B4 9 171 -51 5 943 427 224 12 12 chr1 46936594 46936680 -150258752 + B1F1 SINE Alu 8 93 -56 5 943 246 310 14 0 chr1 46937044 46937115 -150258317 - ID4 SINE ID -11 72 1 5 943 261 0 0 0 chr1 46937289 46937318 -150258114 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 943 235 259 0 33 chr1 46937883 46937943 -150257489 + ID4_ SINE ID 12 69 -14 5 943 363 23 0 0 chr1 46937954 46937998 -150257434 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 943 186 103 0 0 chr1 46938604 46938633 -150256799 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 5 943 1503 62 5 0 chr1 46939698 46939890 -150255542 + B2_Mm1t SINE B2 1 193 0 5 943 230 176 39 19 chr1 46939927 46939979 -150255453 + CT-rich Low_complexity Low_complexity 3 55 0 5 943 480 111 0 0 chr1 46939979 46940051 -150255381 + (TCCCC)n Simple_repeat Simple_repeat 5 76 0 5 943 296 320 0 0 chr1 46940071 46940149 -150255283 - ID2 SINE ID -4 79 2 5 943 630 304 97 10 chr1 46940416 46940808 -150254624 + L1MC LINE L1 5314 5739 -2143 5 943 819 177 47 30 chr1 46940906 46941075 -150254357 + B2_Mm2 SINE B2 1 172 -23 5 943 280 371 41 27 chr1 46941168 46941315 -150254117 + B1F1 SINE Alu 1 149 0 5 943 342 0 0 0 chr1 46941369 46941407 -150254025 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 943 358 297 0 67 chr1 46942574 46942693 -150252739 - PB1D10 SINE Alu -6 111 1 5 943 822 242 6 0 chr1 46942693 46942762 -150252670 - ID SINE ID -143 81 12 5 943 22 0 0 0 chr1 46942775 46942797 -150252635 + AT_rich Low_complexity Low_complexity 1 22 0 5 943 627 57 0 0 chr1 46943390 46943478 -150251954 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 5 943 198 250 0 0 chr1 46943537 46943581 -150251851 - L2c LINE L2 -5 3382 3339 5 943 252 0 0 0 chr1 46943782 46943810 -150251622 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 5 943 387 0 0 0 chr1 46944032 46944075 -150251357 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 943 315 0 0 0 chr1 46944075 46944109 -150251323 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 943 225 244 0 0 chr1 46944768 46944813 -150250619 + G-rich Low_complexity Low_complexity 1 45 0 5 943 447 19 0 0 chr1 46945648 46945700 -150249732 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 943 1099 291 3 31 chr1 46945720 46946011 -150249421 - B4A SINE B4 -7 285 3 5 943 263 200 39 26 chr1 46946151 46946228 -150249204 + L1M2 LINE L1 5156 5233 -910 5 943 376 242 0 0 chr1 46946231 46946297 -150249135 - PB1D10 SINE Alu -6 111 46 5 943 2132 56 0 0 chr1 46946494 46946778 -150248654 - L1_Mus3 LINE L1 -768 5870 5587 5 943 524 74 0 78 chr1 46946782 46946884 -150248548 + L1_Mus3 LINE L1 6535 6628 -10 5 943 225 273 104 15 chr1 46947315 46947382 -150248050 - MIRb SINE MIR -187 81 9 5 943 550 283 0 0 chr1 46947394 46947532 -150247900 + B1_Mur1 SINE Alu 5 142 -7 5 943 207 0 0 0 chr1 46947546 46947569 -150247863 + (A)n Simple_repeat Simple_repeat 1 23 0 5 943 342 0 0 0 chr1 46947779 46947817 -150247615 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 943 852 163 13 20 chr1 46947915 46948065 -150247367 + B1_Mur4 SINE Alu 2 150 0 5 943 180 0 0 0 chr1 46948480 46948500 -150246932 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 943 447 273 48 81 chr1 46950626 46950897 -150244535 + L1MA7 LINE L1 5328 5589 -711 5 943 340 139 42 34 chr1 46950980 46951099 -150244333 + GA-rich Low_complexity Low_complexity 2 121 0 5 943 210 109 35 35 chr1 46951200 46951257 -150244175 + G-rich Low_complexity Low_complexity 4 60 0 5 943 442 292 48 40 chr1 46951354 46951572 -150243860 + ORR1D2 LTR MaLR 85 328 -31 5 943 924 189 114 26 chr1 46951572 46951843 -150243589 + RMER4B LTR ERVK 1 295 -290 5 943 312 247 10 40 chr1 46951938 46952039 -150243393 + RMER4B LTR ERVK 472 569 -16 5 943 987 276 85 45 chr1 46952114 46952441 -150242991 + L1MA7 LINE L1 5712 6038 -253 5 943 453 193 176 0 chr1 46952441 46952560 -150242872 + B1_Mur3 SINE Alu 1 140 -9 5 943 987 276 85 45 chr1 46952560 46952787 -150242645 + L1MA7 LINE L1 6039 6288 -3 5 943 1064 60 15 0 chr1 46952806 46952940 -150242492 + B1_Mur4 SINE Alu 5 140 -10 5 943 258 32 0 0 chr1 46952942 46952973 -150242459 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 943 8050 44 0 7 chr1 46953742 46954733 -150240699 + L1Md_F2 LINE L1 5587 6570 -12 5 943 463 0 0 0 chr1 46954797 46954852 -150240580 - L1Md_F2 LINE L1 -16 6566 6512 5 943 315 0 0 0 chr1 46954907 46954942 -150240490 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 943 2845 138 19 61 chr1 46955428 46955953 -150239479 + L1_Mus3 LINE L1 6136 6638 0 5 943 250 203 0 28 chr1 46956221 46956292 -150239140 + (CAAA)n Simple_repeat Simple_repeat 1 69 0 5 943 465 19 0 0 chr1 46956388 46956442 -150238990 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 943 26 0 0 0 chr1 46956566 46956592 -150238840 + AT_rich Low_complexity Low_complexity 1 26 0 5 943 257 274 189 0 chr1 46957544 46957639 -150237793 + B1F SINE Alu 1 113 -36 5 943 268 250 18 0 chr1 46957838 46957894 -150237538 + B1F SINE Alu 86 142 -7 5 943 275 345 39 63 chr1 46957872 46957918 -150237514 + ID_B1 SINE B4 45 168 -56 5 943 309 286 0 49 chr1 46957918 46957999 -150237433 + B1F2 SINE Alu 14 90 -59 5 943 202 231 29 71 chr1 46958077 46958147 -150237285 - L2a LINE L2 -250 3176 3110 5 943 342 0 0 0 chr1 46959873 46959911 -150235521 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 943 276 266 12 48 chr1 46959912 46959995 -150235437 - ID4 SINE ID -3 80 1 5 943 237 322 0 0 chr1 46959995 46960082 -150235350 + (CAG)n Simple_repeat Simple_repeat 2 88 0 5 943 255 333 12 0 chr1 46960568 46960649 -150234783 + L1M5 LINE L1 2630 2711 -3435 5 943 260 353 26 8 chr1 46960665 46960782 -150234650 + PB1D7 SINE Alu 1 119 -1 5 943 2575 94 35 99 chr1 46961172 46961656 -150233776 + RLTR11B LTR ERVK 1 453 0 5 943 272 350 0 0 chr1 46961736 46961836 -150233596 - ORR1E-int LTR MaLR -1479 101 2 5 943 962 263 36 56 chr1 46961839 46962197 -150233235 - ORR1E LTR MaLR -7 352 2 5 943 281 268 23 125 chr1 46962239 46962367 -150233065 + PB1D7 SINE Alu 6 120 0 5 943 180 0 0 0 chr1 46962453 46962473 -150232959 + (A)n Simple_repeat Simple_repeat 1 20 0 5 943 1990 195 21 43 chr1 46962967 46963386 -150232046 - MTC LTR MaLR -11 410 1 5 943 380 313 78 0 chr1 46963937 46964052 -150231380 - ID_B1 SINE B4 -94 130 7 5 943 914 306 115 16 chr1 46964072 46964839 -150230593 + MER54A LTR ERVL 17 900 -1 5 943 362 317 35 104 chr1 46965877 46966078 -150229354 - Cheshire DNA MER1_type -2186 234 48 5 943 235 371 56 8 chr1 46966328 46966453 -150228979 - ID_B1 SINE B4 -4 220 90 5 943 436 283 31 58 chr1 46966598 46966789 -150228643 - L1MA9 LINE L1 -378 5934 5749 5 943 186 71 0 0 chr1 46966935 46966963 -150228469 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 6 943 1015 228 5 23 chr1 46966974 46967194 -150228238 - B3 SINE B2 0 216 1 6 943 186 143 0 0 chr1 46967199 46967234 -150228198 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 943 639 323 12 6 chr1 46967236 46967401 -150228031 - ID_B1 SINE B4 -7 217 52 6 943 693 261 35 4 chr1 46967516 46967743 -150227689 - L1MD LINE L1 -1853 4293 4060 6 943 216 0 0 0 chr1 46967804 46967828 -150227604 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 943 748 182 0 21 chr1 46967886 46968026 -150227406 - B1_Mus2 SINE Alu -9 138 2 6 943 366 260 50 10 chr1 46968400 46968501 -150226931 + B1F1 SINE Alu 6 110 -39 6 943 514 278 27 49 chr1 46968503 46968688 -150226744 + B3A SINE B2 2 182 -16 6 943 24 53 0 0 chr1 46968709 46968747 -150226685 + AT_rich Low_complexity Low_complexity 1 38 0 6 943 323 316 13 0 chr1 46968755 46968834 -150226598 + ID4 SINE ID 2 81 -2 6 943 180 111 0 0 chr1 46969584 46969611 -150225821 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 6 943 246 32 0 0 chr1 46970276 46970307 -150225125 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 943 1075 72 0 0 chr1 46970307 46970445 -150224987 - B1_Mus2 SINE Alu -8 139 2 6 943 602 293 58 79 chr1 46970452 46970730 -150224702 + MTE2a LTR MaLR 10 281 -98 6 943 1173 61 0 0 chr1 46970937 46971084 -150224348 + B1_Mus2 SINE Alu 1 147 0 6 943 261 98 0 0 chr1 46971084 46971125 -150224307 + (A)n Simple_repeat Simple_repeat 1 41 0 6 943 890 263 5 28 chr1 46971172 46971383 -150224049 + B3 SINE B2 6 211 -5 6 943 858 155 35 79 chr1 46971385 46971588 -150223844 + B2_Mm2 SINE B2 1 194 -1 6 943 569 165 17 0 chr1 46972043 46972158 -150223274 + CT-rich Low_complexity Low_complexity 4 120 0 6 943 1333 101 37 0 chr1 46972158 46972346 -150223086 - B2_Mm2 SINE B2 0 195 1 6 943 644 214 113 50 chr1 46972352 46972573 -150222859 - ORR1D2-int LTR MaLR -27 1553 1319 6 943 318 167 0 0 chr1 46972573 46972633 -150222799 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 943 2040 317 104 82 chr1 46972633 46973911 -150221521 - ORR1D2-int LTR MaLR -233 1347 17 6 943 931 274 96 45 chr1 46973986 46974299 -150221133 - ORR1D2 LTR MaLR 0 370 42 6 943 553 269 124 54 chr1 46974303 46974562 -150220870 - B4 SINE B4 -12 280 4 6 943 423 202 0 45 chr1 46974588 46974676 -150220756 - PB1D10 SINE Alu -6 111 28 6 943 241 268 44 142 chr1 46974682 46974714 -150220718 - B1F SINE Alu -6 143 113 6 943 306 0 0 0 chr1 46974714 46974748 -150220684 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 943 1082 84 0 0 chr1 46974748 46974891 -150220541 - B1_Mus2 SINE Alu -3 144 2 6 943 241 268 44 142 chr1 46974891 46974970 -150220462 - B1F SINE Alu -37 112 43 6 943 275 250 47 0 chr1 46975007 46975071 -150220361 + ID2 SINE ID 1 67 -16 6 943 441 0 0 0 chr1 46975086 46975135 -150220297 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 943 3915 42 34 4 chr1 46975432 46975910 -150219522 + L1Md_F2 LINE L1 6079 6570 -12 6 943 402 21 0 0 chr1 46975924 46975971 -150219461 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 6 943 186 43 0 0 chr1 46976228 46976251 -150219181 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 943 359 21 21 0 chr1 46976473 46976521 -150218911 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 943 434 269 117 32 chr1 46976553 46976741 -150218691 - B4 SINE B4 -8 284 81 6 943 256 160 20 20 chr1 46976813 46976864 -150218568 - RSINE1 SINE B4 -97 68 18 6 943 1342 105 0 5 chr1 46976869 46977060 -150218372 - B2_Mm2 SINE B2 -4 191 2 6 943 35 0 0 0 chr1 46978174 46978209 -150217223 + AT_rich Low_complexity Low_complexity 1 35 0 6 943 1053 76 0 14 chr1 46980007 46980154 -150215278 - B1_Mus1 SINE Alu -1 147 3 6 943 477 170 69 52 chr1 46980310 46980484 -150214948 + RMER17C LTR ERVK 95 271 -139 6 943 25 0 0 0 chr1 46980886 46980911 -150214521 + AT_rich Low_complexity Low_complexity 1 25 0 6 943 21 57 0 0 chr1 46981215 46981250 -150214182 + AT_rich Low_complexity Low_complexity 1 35 0 6 943 429 20 0 0 chr1 46981811 46981861 -150213571 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 943 23 33 0 0 chr1 46983584 46983614 -150211818 + AT_rich Low_complexity Low_complexity 1 30 0 6 943 261 297 120 11 chr1 46984078 46984170 -150211262 - ID_B1 SINE B4 -2 222 121 6 943 211 0 28 56 chr1 46985350 46985386 -150210046 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 943 747 265 195 19 chr1 46985529 46985837 -150209595 - ORR1D1 LTR MaLR -8 366 5 6 943 523 172 207 7 chr1 46986098 46986233 -150209199 - ORR1D2 LTR MaLR 0 370 209 6 943 787 260 101 22 chr1 46986241 46986559 -150208873 - RLTR15 LTR ERVK -16 343 1 6 943 3254 189 34 38 chr1 46986560 46987351 -150208081 - MYSERV6-int LTR ERVK 0 8959 8172 6 943 450 0 0 0 chr1 46987351 46987401 -150208031 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 6 943 300 352 56 7 chr1 46987401 46987544 -150207888 - MYSERV-int LTR ERVK -1431 5119 4970 6 943 647 313 59 47 chr1 46987559 46987881 -150207551 + RLTR9A LTR ERVK 43 368 0 6 943 288 240 30 10 chr1 46987881 46987982 -150207450 - MYSERV-int LTR ERVK -5127 1423 1321 6 943 604 246 30 59 chr1 46988271 46988569 -150206863 - RLTR15 LTR ERVK -13 346 1 6 943 539 351 7 7 chr1 46988569 46988722 -150206710 - ORR1D2 LTR MaLR -154 216 64 6 943 276 270 100 0 chr1 46988732 46988832 -150206600 - MIR SINE MIR -61 201 92 6 943 645 312 28 28 chr1 46988845 46989023 -150206409 + ID_B1 SINE B4 1 178 -46 6 943 181 300 56 0 chr1 46991357 46991447 -150203985 + MIRc SINE MIR 167 261 -7 6 943 270 87 0 42 chr1 46991718 46991766 -150203666 - RMER1B Other Other -9 1057 1012 6 943 1896 221 146 31 chr1 46991781 46992586 -150202846 - RMER1B Other Other -124 942 46 6 943 291 242 57 86 chr1 46992902 46993042 -150202390 + RMER15 LTR ERVL 422 557 -18 6 943 394 315 211 11 chr1 46993189 46993459 -150201973 + L1MC4a LINE L1 5568 5891 -1991 6 943 1245 34 0 0 chr1 46993659 46993806 -150201626 - B1_Mus1 SINE Alu 0 148 2 6 943 207 0 0 0 chr1 46993811 46993834 -150201598 + (T)n Simple_repeat Simple_repeat 1 23 0 6 943 399 246 0 0 chr1 46995142 46995321 -150200111 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 943 217 377 43 0 chr1 46995323 46995392 -150200040 - ID4_ SINE ID -10 73 2 6 943 345 214 0 35 chr1 46995922 46996038 -150199394 + CT-rich Low_complexity Low_complexity 3 114 0 6 943 378 283 114 0 chr1 46996050 46996216 -150199216 + L1M5 LINE L1 4194 4378 -1768 6 943 978 151 42 21 chr1 46996223 46996413 -150199019 + B2_Mm2 SINE B2 2 195 0 6 943 491 301 28 14 chr1 46996448 46996593 -150198839 + RSINE1 SINE B4 2 148 -17 6 943 369 0 0 0 chr1 46996604 46996645 -150198787 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 6 943 719 214 87 15 chr1 46996792 46996987 -150198445 - B3 SINE B2 -6 210 2 6 943 1007 229 94 34 chr1 46997150 46997417 -150198015 + Lx8 LINE L1 7080 7362 -111 6 943 1848 139 69 3 chr1 46998303 46998621 -150196811 + RMER6C LTR ERVK 1 339 -351 6 943 5122 94 24 13 chr1 46998622 47000000 -150195432 + L1Md_F LINE L1 370 1764 -4119 6 943 15569 72 5 5 chr1 47000000 47001711 -150193721 + L1_Mm LINE L1 1765 3481 -2402 1 943 4505 102 99 117 chr1 47001711 47002620 -150192812 + RLTR13B1 LTR ERVK 1 893 0 2 943 15569 72 5 5 chr1 47002620 47003145 -150192287 + L1_Mm LINE L1 3482 4002 -1881 1 943 21708 87 23 14 chr1 47003145 47003361 -150192071 - L1_Mur1 LINE L1 -385 5501 5273 3 943 183 42 0 0 chr1 47003361 47003385 -150192047 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 943 21708 87 23 14 chr1 47003385 47006573 -150188859 - L1_Mur1 LINE L1 -614 5272 2066 3 943 47 37 0 24 chr1 47006841 47006876 -150188556 + AT_rich Low_complexity Low_complexity 1 35 0 5 943 1275 93 52 0 chr1 47006876 47007070 -150188362 + L1Md_F2 LINE L1 6378 6581 -1 6 943 47 37 0 24 chr1 47007070 47007117 -150188315 + AT_rich Low_complexity Low_complexity 1 46 0 7 943 22 0 0 0 chr1 47007286 47007308 -150188124 + AT_rich Low_complexity Low_complexity 1 22 0 8 943 24 32 0 0 chr1 47007363 47007394 -150188038 + AT_rich Low_complexity Low_complexity 1 31 0 9 943 1900 219 5 68 chr1 47007431 47007795 -150187637 - MTC LTR MaLR 0 421 82 1 943 1249 57 0 0 chr1 47007795 47007953 -150187479 - L1_Mus2 LINE L1 -2 6564 6407 1 943 1900 219 5 68 chr1 47007953 47007999 -150187433 - MTC LTR MaLR -340 81 37 1 943 36256 30 0 0 chr1 47008002 47014213 -150181219 - L1Md_T LINE L1 0 6585 278 1 943 1493 68 10 0 chr1 47014301 47014493 -150180939 - B2_Mm2 SINE B2 0 195 2 1 943 824 97 21 0 chr1 47014683 47014827 -150180605 + RMER17B LTR ERVK 312 458 -500 1 943 333 306 71 36 chr1 47015637 47015749 -150179683 - B1F1 SINE Alu 0 117 2 1 943 298 219 0 14 chr1 47016172 47016246 -150179186 + L1_Mur1 LINE L1 674 746 -6238 1 943 1972 114 6 22 chr1 47016231 47016533 -150178899 + L1_Mur1 LINE L1 993 1295 -5689 1 943 3756 102 77 60 chr1 47016533 47017271 -150178161 + RMER17A LTR ERVK 1 751 0 1 943 1972 140 15 23 chr1 47017271 47017524 -150177908 + L1_Mur1 LINE L1 1296 1547 -4339 1 943 497 320 45 5 chr1 47017544 47017764 -150177668 - Lx6 LINE L1 -26 7434 7206 1 943 863 236 61 57 chr1 47017826 47018055 -150177377 - RMER12 LTR ERVK -105 1217 988 1 943 263 161 0 18 chr1 47018055 47018112 -150177320 + A-rich Low_complexity Low_complexity 3 58 0 2 943 493 249 69 99 chr1 47018120 47018352 -150177080 - RLTR22_Mur LTR ERVK -1030 818 594 2 943 1439 283 25 0 chr1 47018880 47019247 -150176185 - MTEa LTR MaLR 0 379 4 2 943 523 286 73 29 chr1 47019351 47019488 -150175944 + B3A SINE B2 2 144 -54 2 943 318 273 8 0 chr1 47019504 47019601 -150175831 - MLT1A0 LTR MaLR -69 339 208 2 943 338 289 49 66 chr1 47019622 47019744 -150175688 - MLT1A0 LTR MaLR -235 130 11 2 943 275 293 31 108 chr1 47020050 47020180 -150175252 - L2c LINE L2 -4 3383 3264 2 943 279 325 85 43 chr1 47020248 47020412 -150175020 + RMER17D LTR ERVK 410 580 -309 2 943 246 205 22 143 chr1 47020442 47020533 -150174899 + PB1D7 SINE Alu 40 119 -1 2 943 369 162 0 0 chr1 47020537 47020605 -150174827 + GA-rich Low_complexity Low_complexity 3 70 0 2 943 216 0 0 0 chr1 47021138 47021162 -150174270 + (A)n Simple_repeat Simple_repeat 1 24 0 2 943 864 251 24 0 chr1 47021215 47021422 -150174010 - B3 SINE B2 -3 213 2 3 943 465 287 14 7 chr1 47021511 47021655 -150173777 + B1F SINE Alu 3 147 -2 3 943 374 331 108 4 chr1 47022169 47022409 -150173023 - L1MEc LINE L1 -6030 370 106 3 943 517 285 34 14 chr1 47022409 47022555 -150172877 + B1F SINE Alu 1 149 0 3 943 243 0 0 0 chr1 47022565 47022592 -150172840 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 943 1154 186 72 5 chr1 47024536 47024758 -150170674 + MTD LTR MaLR 183 419 0 3 943 390 302 24 48 chr1 47024764 47024889 -150170543 + RSINE1 SINE B4 44 165 0 3 943 185 94 31 0 chr1 47024930 47024962 -150170470 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 943 306 0 0 0 chr1 47025638 47025672 -150169760 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 943 275 71 24 0 chr1 47027033 47027075 -150168357 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 943 239 114 0 22 chr1 47027077 47027122 -150168310 + (GGA)n Simple_repeat Simple_repeat 2 45 0 4 943 223 189 0 54 chr1 47027377 47027433 -150167999 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 4 943 3180 242 356 1 chr1 47027633 47027767 -150167665 - Lx9 LINE L1 -6 7638 7458 4 943 306 0 0 0 chr1 47027767 47027801 -150167631 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 943 3180 171 43 5 chr1 47027801 47028410 -150167022 - Lx9 LINE L1 -187 7457 6825 4 943 330 329 41 48 chr1 47028477 47028624 -150166808 - B4A SINE B4 -134 158 13 4 943 488 351 79 0 chr1 47028642 47028844 -150166588 - ID_B1 SINE B4 -4 220 3 4 943 10832 67 3 1 chr1 47029857 47031358 -150164074 + L1_Mm LINE L1 3098 4602 -1281 4 943 28644 67 5 5 chr1 47031367 47036184 -150159248 - L1Md_F LINE L1 -969 4914 144 4 943 744 290 28 0 chr1 47036535 47036752 -150158680 + ID_B1 SINE B4 1 223 -1 4 943 369 264 77 44 chr1 47036808 47036990 -150158442 - RLTR14 LTR ERV1 -40 342 155 4 943 4603 122 21 61 chr1 47037132 47037900 -150157532 + RMER19A LTR ERVK 1 737 0 5 943 596 307 14 0 chr1 47038146 47038286 -150157146 - RSINE1 SINE B4 -21 144 3 5 943 656 243 7 29 chr1 47038299 47038439 -150156993 - B1_Mur3 SINE Alu -3 146 10 5 943 414 0 0 0 chr1 47038684 47038730 -150156702 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 943 429 20 0 0 chr1 47038730 47038779 -150156653 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 943 602 265 29 11 chr1 47038785 47039025 -150156407 - L1MA4 LINE L1 -368 5932 5692 5 943 295 329 24 0 chr1 47040351 47040436 -150154996 - PB1D10 SINE Alu -10 107 21 5 943 404 308 0 0 chr1 47040502 47040593 -150154839 + B1_Mur2 SINE Alu 3 93 -56 5 943 1623 216 108 8 chr1 47040611 47040998 -150154434 - Lx5 LINE L1 0 7050 6625 5 943 375 171 118 0 chr1 47040998 47041074 -150154358 - RLTR11A LTR ERVK -2 526 442 5 943 1294 119 0 0 chr1 47041069 47041246 -150154186 - RLTR11A LTR ERVK -351 177 1 5 943 1216 188 42 0 chr1 47041246 47041486 -150153946 - Lx5 LINE L1 -418 6632 6383 5 943 3156 178 60 14 chr1 47041486 47042051 -150153381 - RMER19B LTR ERVK -311 591 1 6 943 1181 213 35 27 chr1 47042051 47042311 -150153121 - Lx5 LINE L1 -670 6380 6119 5 943 265 238 100 26 chr1 47042518 47042654 -150152778 + MIRc SINE MIR 1 133 -143 6 943 903 67 0 0 chr1 47043992 47044111 -150151321 + (TTTTC)n Simple_repeat Simple_repeat 1 119 0 6 943 1371 62 0 0 chr1 47044114 47044292 -150151140 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 6 943 612 40 0 0 chr1 47044295 47044370 -150151062 + (TCCCC)n Simple_repeat Simple_repeat 3 77 0 6 943 198 103 0 0 chr1 47044370 47044399 -150151033 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6 943 988 84 0 0 chr1 47044399 47044530 -150150902 - B1_Mm SINE Alu 0 147 17 6 943 218 349 73 0 chr1 47045616 47045725 -150149707 - MER5B DNA MER1_type -6 172 56 6 943 1263 195 157 21 chr1 47045766 47046149 -150149283 - Lx9 LINE L1 -2 7642 7208 6 943 943 234 60 30 chr1 47046167 47046432 -150149000 + ORR1E LTR MaLR 79 351 -8 6 943 1188 48 7 0 chr1 47046432 47046578 -150148854 + B1_Mm SINE Alu 1 147 0 7 943 283 345 11 0 chr1 47046849 47046936 -150148496 - LTR16A LTR ERVL -98 353 266 7 117 37394 57 1 23 chr1 47048148 47054951 -150140481 - L1Md_T LINE L1 0 6582 99 7 944 647 177 97 0 chr1 47054954 47055078 -150140354 - B1_Mus2 SINE Alu 0 147 12 7 944 280 175 33 66 chr1 47055166 47055227 -150140205 - ID4_ SINE ID -5 78 20 7 944 268 203 15 59 chr1 47055171 47055239 -150140193 - tRNA-Ala-GCY_ tRNA tRNA -10 65 1 7 944 352 223 20 41 chr1 47056238 47056336 -150139096 - MER34 LTR ERV1 0 542 447 7 944 628 291 126 14 chr1 47056391 47056614 -150138818 + RMER21B LTR ERV1 322 569 -273 7 944 520 307 70 25 chr1 47056783 47056888 -150138544 - MER34 LTR ERV1 -277 265 155 7 944 324 0 0 0 chr1 47056888 47056924 -150138508 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 944 520 307 70 25 chr1 47056924 47057062 -150138370 - MER34 LTR ERV1 -388 154 11 7 944 300 293 143 25 chr1 47057158 47057319 -150138113 - MER3 DNA MER1_type 0 209 30 7 944 24 32 0 0 chr1 47058964 47058995 -150136437 + AT_rich Low_complexity Low_complexity 1 31 0 8 944 3158 171 41 4 chr1 47059005 47059567 -150135865 - Lx LINE L1 -2 6652 6070 8 944 2427 170 38 53 chr1 47059589 47060042 -150135390 + RLTR41 LTR ERV1 1 446 0 8 944 725 221 7 0 chr1 47060056 47060201 -150135231 + B1_Mus2 SINE Alu 1 146 -1 8 944 1236 277 58 0 chr1 47060460 47060908 -150134524 - L1MA4 LINE L1 -373 5927 5454 8 944 248 312 25 12 chr1 47061639 47061720 -150133712 + BC1_Mm scRNA scRNA 6 87 -65 8 944 368 259 119 17 chr1 47061787 47061964 -150133468 - L1MD2 LINE L1 -3 6356 6162 8 944 232 253 114 0 chr1 47062078 47062157 -150133275 - L1MD2 LINE L1 -685 5674 5587 8 944 483 330 70 39 chr1 47062228 47062268 -150133164 - L1M4b LINE L1 -6922 412 377 8 944 423 0 0 0 chr1 47062268 47062315 -150133117 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 944 483 330 70 39 chr1 47062315 47062504 -150132928 - L1M4b LINE L1 -6958 376 176 8 944 199 219 0 86 chr1 47062505 47062575 -150132857 - L2c LINE L2 -269 3118 3055 8 944 295 264 110 0 chr1 47062705 47062796 -150132636 + PB1D10 SINE Alu 2 102 -15 9 944 218 319 44 0 chr1 47062953 47063044 -150132388 + MIR3 SINE MIR 113 207 -1 9 944 212 312 160 23 chr1 47063443 47063574 -150131858 - L2a LINE L2 -3 3423 3275 9 944 391 314 68 98 chr1 47063693 47064114 -150131318 - L2a LINE L2 -267 3159 2745 9 944 3118 64 177 2 chr1 47065269 47065705 -150129727 - RLTR1B LTR ERV1 0 512 1 9 944 2225 120 25 22 chr1 47065977 47066344 -150129088 - RLTR9A LTR ERVK 0 368 1 9 944 253 322 39 47 chr1 47066567 47066694 -150128738 + RSINE1 SINE B4 8 133 -32 9 944 441 0 0 0 chr1 47066756 47066805 -150128627 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 944 250 319 10 61 chr1 47067547 47067672 -150127760 + ID_B1 SINE B4 76 194 -98 9 944 582 15 0 0 chr1 47068186 47068253 -150127179 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9 944 442 60 12 0 chr1 47068253 47068336 -150127096 - L1Md_F2 LINE L1 -28 6554 6471 9 944 881 168 36 42 chr1 47069716 47069909 -150125523 + B2_Mm2 SINE B2 4 195 0 1 944 208 139 0 0 chr1 47069913 47069949 -150125483 + (A)n Simple_repeat Simple_repeat 1 36 0 1 944 247 167 52 143 chr1 47069986 47070063 -150125369 + RLTR42 LTR ERVK 23 92 -147 1 944 285 170 0 0 chr1 47070341 47070388 -150125044 + RMER21A LTR ERV1 418 464 -483 1 944 644 221 206 31 chr1 47070384 47070641 -150124791 + RMER21B LTR ERV1 266 567 -275 1 944 247 354 12 24 chr1 47070648 47070732 -150124700 + RMER21B LTR ERV1 753 835 -112 1 944 737 264 57 49 chr1 47071688 47072005 -150123427 + LTRIS4 LTR ERV1 207 512 0 1 944 21 0 0 0 chr1 47072089 47072110 -150123322 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 198 103 0 0 chr1 47072577 47072606 -150122826 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 1 944 805 292 64 55 chr1 47072717 47073470 -150121962 + RMER1A Other Other 35 567 -499 1 944 8219 131 23 11 chr1 47073465 47075727 -150119705 + Lx2 LINE L1 4351 6641 -356 1 944 1412 118 14 0 chr1 47075729 47075949 -150119483 + Lx2 LINE L1 6775 6997 0 1 944 581 179 43 0 chr1 47075949 47076089 -150119343 - Lx7 LINE L1 -194 7502 7357 1 944 212 179 0 25 chr1 47076134 47076174 -150119258 + GA-rich Low_complexity Low_complexity 4 42 0 1 944 438 20 0 0 chr1 47076430 47076481 -150118951 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 944 2495 149 147 20 chr1 47076698 47077302 -150118130 - L1_Mur3 LINE L1 -2707 3173 2493 1 944 2150 166 46 15 chr1 47077306 47077697 -150117735 - MTC LTR MaLR -8 413 11 1 944 3379 144 23 93 chr1 47077705 47078481 -150116951 - MTC-int LTR MaLR 0 1258 409 1 944 1763 156 70 17 chr1 47078486 47078845 -150116587 + RMER17C LTR ERVK 1 378 -32 1 944 802 116 0 46 chr1 47078871 47078887 -150116545 + polypyrimidine Low_complexity Low_complexity 133 148 0 1 944 1347 72 0 0 chr1 47078887 47079067 -150116365 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 944 802 116 0 46 chr1 47079067 47079125 -150116307 + polypyrimidine Low_complexity Low_complexity 79 132 0 1 944 3961 52 2 0 chr1 47079125 47079606 -150115826 - L1Md_F2 LINE L1 -13 6569 6088 1 944 802 116 0 46 chr1 47079606 47079683 -150115749 + polypyrimidine Low_complexity Low_complexity 3 78 0 1 944 1418 34 0 6 chr1 47079683 47079860 -150115572 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 1 944 2113 170 46 13 chr1 47079861 47080254 -150115178 - MTC-int LTR MaLR -851 407 2 1 944 1809 172 32 5 chr1 47080258 47080606 -150114826 - MTC LTR MaLR -42 365 1 1 944 1719 157 11 36 chr1 47080606 47080963 -150114469 - L1_Mur3 LINE L1 -3383 2497 2150 1 944 428 97 14 0 chr1 47081073 47081145 -150114287 - L1_Mus2 LINE L1 0 6566 6494 1 944 2307 182 9 9 chr1 47081162 47081589 -150113843 - RLTR11A2 LTR ERVK -100 427 1 1 944 817 133 7 0 chr1 47081590 47081733 -150113699 - L1_Mur3 LINE L1 -3886 1994 1851 1 944 2742 27 6 3 chr1 47081737 47082073 -150113359 - ORR1A0 LTR MaLR -9 337 1 1 944 3207 147 32 11 chr1 47082073 47082901 -150112531 - L1_Mur3 LINE L1 -4024 1856 1021 1 944 1360 85 27 0 chr1 47082901 47083089 -150112343 - B2_Mm1t SINE B2 0 193 1 1 944 1819 160 62 21 chr1 47083089 47083189 -150112243 - L1_Mur3 LINE L1 -6708 1020 907 1 944 284 137 0 0 chr1 47083189 47083240 -150112192 + (T)n Simple_repeat Simple_repeat 1 51 0 1 944 954 108 12 12 chr1 47083241 47083409 -150112023 - L1_Mur3 LINE L1 -6805 923 756 1 944 400 345 112 66 chr1 47083660 47083946 -150111486 + LTR16A LTR ERVL 1 299 -152 1 944 850 290 0 5 chr1 47084020 47084204 -150111228 + B3 SINE B2 2 184 -32 1 944 62 72 0 0 chr1 47084204 47084329 -150111103 + AT_rich Low_complexity Low_complexity 1 125 0 1 944 1157 247 140 28 chr1 47084886 47085344 -150110088 - RMER5 LTR ERV1 0 534 26 1 944 228 229 40 54 chr1 47086047 47086121 -150109311 + Tigger7 DNA MER2_type 2176 2248 -243 1 944 410 217 9 0 chr1 47086217 47086332 -150109100 + CT-rich Low_complexity Low_complexity 2 117 0 1 944 244 207 145 12 chr1 47086852 47086935 -150108497 - Lx9 LINE L1 -444 7200 7107 1 944 1495 203 21 42 chr1 47086958 47087188 -150108244 + Lx9 LINE L1 7260 7487 -157 1 944 2324 63 72 16 chr1 47087188 47087509 -150107923 + L1_Mus2 LINE L1 6228 6566 0 1 944 1495 203 21 42 chr1 47087509 47087664 -150107768 + Lx9 LINE L1 7488 7637 -7 1 944 228 321 9 18 chr1 47088359 47088473 -150106959 + L1MCa LINE L1 1165 1277 -5146 1 944 357 284 244 21 chr1 47088479 47088770 -150106662 + L1MCa LINE L1 1409 1764 -5364 1 944 663 250 7 0 chr1 47088831 47088967 -150106465 + RSINE1 SINE B4 3 139 -26 1 944 475 231 96 13 chr1 47089317 47089461 -150105971 + ORR1D1 LTR MaLR 108 308 -66 1 944 468 0 0 0 chr1 47089484 47089536 -150105896 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1 944 1217 16 19 39 chr1 47089560 47089820 -150105612 + (TCTA)n Simple_repeat Simple_repeat 1 254 0 1 944 270 265 83 12 chr1 47089873 47089957 -150105475 + MLT1D LTR MaLR 1 90 -415 1 944 927 173 68 6 chr1 47090322 47090485 -150104947 - B3 SINE B2 -5 211 39 1 944 8641 203 34 14 chr1 47090499 47092310 -150103122 - Lx6 LINE L1 -12 7448 5602 1 944 3520 138 68 10 chr1 47092310 47092985 -150102447 - Lx6 LINE L1 -762 5118 4405 1 944 277 279 73 16 chr1 47093106 47093230 -150102202 - MER3 DNA MER1_type -1 208 78 1 944 221 374 65 39 chr1 47093508 47093661 -150101771 - MIRb SINE MIR -24 244 88 1 944 295 208 39 39 chr1 47094920 47095075 -150100357 + (TTATA)n Simple_repeat Simple_repeat 4 158 0 1 944 32 57 0 0 chr1 47095663 47095716 -150099716 + AT_rich Low_complexity Low_complexity 1 53 0 1 944 531 0 0 0 chr1 47096327 47096386 -150099046 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 944 262 390 0 0 chr1 47096454 47096531 -150098901 - ID2 SINE ID -5 78 2 1 944 294 29 0 0 chr1 47097074 47097109 -150098323 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 944 1594 222 94 59 chr1 47097558 47098013 -150097419 - RMER19C LTR ERVK -6 605 135 1 944 799 281 29 5 chr1 47098185 47098389 -150097043 - B3 SINE B2 0 216 8 1 944 321 363 193 0 chr1 47098414 47098549 -150096883 - RSINE1 SINE B4 -4 161 1 1 944 484 15 31 0 chr1 47099223 47099288 -150096144 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 944 414 0 0 0 chr1 47099288 47099333 -150096099 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 944 258 247 41 0 chr1 47099362 47099435 -150095997 - ID2 SINE ID -6 77 2 1 944 389 281 222 13 chr1 47099501 47099807 -150095625 - L1MA6 LINE L1 -162 6138 5769 1 944 240 214 0 0 chr1 47099907 47099963 -150095469 + CT-rich Low_complexity Low_complexity 3 58 0 1 944 667 182 0 0 chr1 47099969 47100079 -150095353 - B1_Mur4 SINE Alu -6 144 35 1 944 450 0 0 0 chr1 47100940 47100990 -150094442 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1 944 333 0 0 0 chr1 47101071 47101108 -150094324 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 944 636 267 27 7 chr1 47101128 47101275 -150094157 - RSINE1 SINE B4 -14 151 2 1 944 273 281 174 0 chr1 47102176 47102297 -150093135 - MLT1B LTR MaLR -218 172 31 1 944 559 221 31 38 chr1 47102339 47102499 -150092933 - RLTR14 LTR ERV1 0 382 224 1 944 2652 143 46 78 chr1 47103942 47104465 -150090967 - RLTR24 LTR ERV1 -23 506 1 1 944 248 273 54 96 chr1 47104643 47104809 -150090623 + RMER15 LTR ERVL 1 159 -416 1 944 267 273 118 29 chr1 47105511 47105613 -150089819 + LTR48 LTR ERV1 676 786 -1 1 944 390 91 0 0 chr1 47105666 47105721 -150089711 + (GGA)n Simple_repeat Simple_repeat 1 55 0 1 944 1120 7 27 7 chr1 47105721 47105871 -150089561 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 944 556 315 0 0 chr1 47106036 47106166 -150089266 + ID_B1 SINE B4 87 216 -8 1 944 188 35 35 0 chr1 47106169 47106198 -150089234 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 944 446 258 8 8 chr1 47106376 47106501 -150088931 + MER63D DNA AcHobo 24 148 -913 1 944 1136 51 0 0 chr1 47106503 47106640 -150088792 + B1_Mm SINE Alu 1 137 -10 1 944 365 296 89 56 chr1 47106686 47106955 -150088477 + MER63D DNA AcHobo 45 398 -663 1 944 459 0 0 0 chr1 47107286 47107337 -150088095 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1 944 522 46 0 0 chr1 47107338 47107403 -150088029 + (CAGC)n Simple_repeat Simple_repeat 4 68 0 1 944 271 316 77 4 chr1 47109403 47109651 -150085781 + L1MC4a LINE L1 6314 6579 -1303 1 944 369 319 165 45 chr1 47109655 47109921 -150085511 + MLT1E2 LTR MaLR 1 298 -329 1 944 261 275 141 44 chr1 47109921 47109986 -150085446 + L1MC4a LINE L1 6924 6981 -901 1 944 1174 224 243 57 chr1 47109986 47110464 -150084968 - RMER2 LTR ERV1 0 567 1 1 944 261 275 141 44 chr1 47110464 47110717 -150084715 + L1MC4a LINE L1 6982 7273 -609 1 944 785 172 16 8 chr1 47110724 47110853 -150084579 + B1_Mur4 SINE Alu 6 135 -15 1 944 717 298 49 22 chr1 47110870 47111279 -150084153 + L1MC4a LINE L1 7274 7693 -189 1 944 3229 199 33 5 chr1 47111308 47111974 -150083458 - Lx5 LINE L1 -57 6993 6309 1 944 22 56 0 0 chr1 47112092 47112128 -150083304 + AT_rich Low_complexity Low_complexity 1 36 0 1 944 592 262 68 19 chr1 47112170 47112376 -150083056 + B3 SINE B2 1 216 0 1 944 351 303 91 46 chr1 47112660 47113033 -150082399 - MLT1B LTR MaLR 0 390 1 1 944 2506 54 51 0 chr1 47113468 47113804 -150081628 + L1_Mus3 LINE L1 6275 6627 -11 1 944 26 0 0 0 chr1 47114756 47114782 -150080650 + AT_rich Low_complexity Low_complexity 1 26 0 1 944 253 301 14 14 chr1 47115553 47115627 -150079805 - B4A SINE B4 -199 93 20 1 944 476 304 44 112 chr1 47115793 47116178 -150079254 - ORR1E LTR MaLR 0 359 1 1 944 491 211 0 40 chr1 47118025 47118124 -150077308 + B1_Mur1 SINE Alu 34 128 -21 1 944 1502 46 4 169 chr1 47118255 47118516 -150076916 - L1Md_T LINE L1 0 6582 6365 1 944 560 53 13 0 chr1 47118516 47118591 -150076841 + L1Md_F2 LINE L1 6264 6339 -243 1 944 3186 138 133 22 chr1 47118706 47119343 -150076089 - Lx2B LINE L1 0 7000 6293 1 944 10050 137 47 31 chr1 47119337 47121366 -150074066 - L1_Mur1 LINE L1 -662 5224 3164 1 944 1838 163 3 10 chr1 47121370 47121680 -150073752 - RLTR10E LTR ERVK -3 308 1 1 944 11583 169 59 58 chr1 47121680 47124635 -150070797 - MMERVK10C-int LTR ERVK 0 7581 4623 1 944 275 45 44 22 chr1 47125384 47125429 -150070003 - MMERVK10C-int LTR ERVK -2934 4647 4602 1 944 1944 150 44 3 chr1 47125428 47126021 -150069411 - MMERVK10C-int LTR ERVK -3169 4237 3569 1 944 1100 234 62 21 chr1 47126047 47126335 -150069097 - MMERVK10C-int LTR ERVK -4653 2753 2454 1 944 512 195 88 0 chr1 47126348 47126461 -150068971 - RMER16-int LTR ERVK -5077 1060 938 1 944 1412 159 113 50 chr1 47126466 47126904 -150068528 - RMER16-int LTR ERVK -4750 656 313 1 944 2887 181 67 69 chr1 47126883 47127753 -150067679 - MMERVK10C-int LTR ERVK -6713 868 1 1 944 1962 145 0 10 chr1 47127754 47128068 -150067364 - RLTR10E LTR ERVK 0 311 1 1 944 8478 150 64 29 chr1 47128068 47128750 -150066682 - L1_Mur1 LINE L1 -2717 3169 2456 1 944 215 31 0 30 chr1 47128750 47128783 -150066649 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1 944 8478 157 59 29 chr1 47128783 47130430 -150065002 - L1_Mur1 LINE L1 -3431 2455 760 1 944 1254 58 115 0 chr1 47130745 47130919 -150064513 + B2_Mm2 SINE B2 2 195 0 1 944 357 82 0 0 chr1 47130957 47131006 -150064426 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1 944 366 0 0 53 chr1 47131114 47131171 -150064261 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 944 181 370 128 20 chr1 47131942 47132091 -150063341 + L2a LINE L2 3028 3192 -234 1 944 493 15 30 0 chr1 47132118 47132184 -150063248 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 2 944 24 53 0 0 chr1 47132193 47132231 -150063201 + AT_rich Low_complexity Low_complexity 1 38 0 2 944 207 0 0 0 chr1 47132924 47132947 -150062485 + (CTAA)n Simple_repeat Simple_repeat 3 25 0 2 944 2002 123 70 55 chr1 47133363 47133766 -150061666 + RLTR9E LTR ERVK 1 409 0 2 944 720 326 33 8 chr1 47134508 47134752 -150060680 - B4A SINE B4 -42 250 1 2 944 931 276 24 21 chr1 47136941 47137230 -150058202 - B4 SINE B4 0 292 3 2 944 396 0 0 0 chr1 47137346 47137390 -150058042 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 944 1087 80 0 0 chr1 47137390 47137528 -150057904 - B1_Mus1 SINE Alu -10 138 1 2 944 36218 31 1 0 chr1 47137559 47143666 -150051766 - L1Md_T LINE L1 0 6585 377 2 944 32 43 0 0 chr1 47143751 47143797 -150051635 + AT_rich Low_complexity Low_complexity 1 46 0 2 944 1814 193 80 13 chr1 47143916 47144314 -150051118 - RMER1B Other Other 0 1066 642 2 944 511 258 42 18 chr1 47144394 47144560 -150050872 - RLTR12B LTR ERVK -42 486 317 2 944 2111 88 0 25 chr1 47144561 47144927 -150050505 - L1Md_F2 LINE L1 0 6582 6265 2 944 720 277 63 48 chr1 47144934 47145237 -150050195 - RLTR12B LTR ERVK -232 336 42 2 944 229 132 0 0 chr1 47145412 47145450 -150049982 - L1M5 LINE L1 -1014 5430 5393 2 944 221 209 0 0 chr1 47145548 47145591 -150049841 + B3A SINE B2 1 43 -155 2 944 304 291 92 40 chr1 47145963 47146087 -150049345 + MLT1H1 LTR MaLR 32 204 -345 2 944 212 261 220 59 chr1 47146387 47146402 -150049030 + B4 SINE B4 81 217 -75 2 944 460 274 10 10 chr1 47146402 47146505 -150048927 + PB1D10 SINE Alu 6 108 -9 2 944 983 179 47 44 chr1 47146524 47146798 -150048634 + Lx9 LINE L1 5826 6100 -1544 2 944 767 199 0 0 chr1 47146806 47146941 -150048491 + ORR1B2 LTR MaLR 1 135 -259 2 944 2000 231 70 179 chr1 47146941 47147962 -150047470 + RMER17B LTR ERVK 1 910 -48 2 944 1483 146 56 8 chr1 47147968 47148217 -150047215 + ORR1B2 LTR MaLR 106 366 -1 2 944 4779 220 82 2 chr1 47148290 47149475 -150045957 + Lx9 LINE L1 6306 7584 -60 2 944 478 214 19 0 chr1 47149501 47149604 -150045828 + Lx9 LINE L1 6407 6511 -1133 2 944 444 289 18 0 chr1 47150742 47150856 -150044576 + PB1D10 SINE Alu 2 117 0 2 944 212 370 34 82 chr1 47151344 47151491 -150043941 - L3 LINE CR1 -50 4439 4300 2 944 387 0 0 0 chr1 47151911 47151954 -150043478 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 944 238 329 24 35 chr1 47152580 47152665 -150042767 + B4A SINE B4 208 291 -1 2 944 230 73 0 24 chr1 47153449 47153491 -150041941 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 2 944 441 0 0 0 chr1 47153700 47153749 -150041683 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 944 231 167 0 0 chr1 47153775 47153811 -150041621 - tRNA-Leu-CTG tRNA tRNA -48 38 3 2 944 21 0 0 0 chr1 47154802 47154823 -150040609 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 9272 84 192 30 chr1 47155867 47157060 -150038372 - L1VL2 LINE L1 -632 2983 1494 2 944 1424 28 90 0 chr1 47157060 47157237 -150038195 - B2_Mm1t SINE B2 0 193 1 2 944 9272 90 108 18 chr1 47157237 47158415 -150037017 - L1VL2 LINE L1 -2122 1493 310 2 944 354 108 0 0 chr1 47158425 47158490 -150036942 + (T)n Simple_repeat Simple_repeat 1 65 0 2 944 1125 102 0 0 chr1 47158490 47158637 -150036795 - B1_Mus1 SINE Alu 0 148 2 2 944 253 215 0 0 chr1 47158907 47158972 -150036460 + A-rich Low_complexity Low_complexity 1 65 0 2 944 480 296 23 0 chr1 47158994 47159126 -150036306 - B1F SINE Alu -14 135 1 2 944 234 62 0 0 chr1 47159848 47159880 -150035552 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 944 2415 62 0 3 chr1 47161344 47161650 -150033782 - L1_Mus1 LINE L1 0 6567 6263 2 944 952 267 74 11 chr1 47161889 47162158 -150033274 - B4A SINE B4 -6 286 1 2 944 32738 30 0 0 chr1 47162672 47168117 -150027315 + L1Md_T LINE L1 48 5589 -297 2 944 8907 6 0 0 chr1 47168117 47169101 -150026331 + L1Md_T LINE L1 5590 6573 -12 2 944 189 361 144 6 chr1 47170293 47170474 -150024958 + L3b LINE CR1 2 207 -275 2 944 32 0 0 0 chr1 47170574 47170606 -150024826 + AT_rich Low_complexity Low_complexity 1 32 0 2 944 3299 170 64 9 chr1 47170760 47171460 -150023972 - L1_Mur2 LINE L1 -517 5360 4622 2 944 511 176 139 25 chr1 47171469 47171591 -150023841 - RLTR9E LTR ERVK 0 393 258 2 944 15390 75 6 84 chr1 47171591 47173564 -150021868 - L1Md_T LINE L1 -5 6577 4615 2 944 2056 101 3 13 chr1 47173564 47173866 -150021566 - RLTR9E LTR ERVK -110 299 1 2 944 15390 75 6 84 chr1 47173866 47175227 -150020205 - L1Md_T LINE L1 -5 4614 3259 2 944 4855 116 3 13 chr1 47175215 47175260 -150020172 - L1VL4 LINE L1 -1849 1710 1667 2 944 429 20 0 0 chr1 47175260 47175310 -150020122 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 944 4855 166 12 16 chr1 47175310 47176971 -150018461 - L1VL4 LINE L1 -1893 1666 11 2 944 668 41 58 0 chr1 47176978 47177099 -150018333 + (TG)n Simple_repeat Simple_repeat 2 129 0 2 944 29 28 0 0 chr1 47178098 47178134 -150017298 + AT_rich Low_complexity Low_complexity 1 36 0 2 944 35 0 0 0 chr1 47178170 47178205 -150017227 + AT_rich Low_complexity Low_complexity 1 35 0 2 944 1091 38 0 0 chr1 47178926 47179058 -150016374 - B1_Mus1 SINE Alu -5 143 12 2 944 404 317 20 0 chr1 47179068 47179169 -150016263 - PB1D10 SINE Alu -5 112 10 2 944 25 0 0 0 chr1 47179213 47179238 -150016194 + AT_rich Low_complexity Low_complexity 1 25 0 2 944 1292 49 0 0 chr1 47179247 47179410 -150016022 - L1Md_T LINE L1 0 6582 6420 2 944 1956 183 13 43 chr1 47179447 47179823 -150015609 - ORR1D1 LTR MaLR -5 369 5 2 944 269 242 0 139 chr1 47179898 47179970 -150015462 + B1F SINE Alu 1 62 -87 2 944 1623 276 102 12 chr1 47180039 47180714 -150014718 + L1MC1 LINE L1 5341 6076 -1709 2 944 7815 44 0 0 chr1 47181798 47182891 -150012541 - L1Md_F2 LINE L1 -13 6569 5477 2 944 2902 52 0 0 chr1 47182890 47183272 -150012160 + L1Md_F2 LINE L1 5032 5413 -470 2 944 904 286 44 54 chr1 47183272 47183642 -150011790 - MLT2D LTR ERVL -165 391 31 2 944 24 77 0 0 chr1 47184179 47184231 -150011201 + AT_rich Low_complexity Low_complexity 1 52 0 2 944 919 203 21 55 chr1 47184276 47184511 -150010921 + RLTR31_Mm LTR ERVK 251 477 -84 2 944 312 91 0 0 chr1 47184544 47184588 -150010844 + (T)n Simple_repeat Simple_repeat 1 44 0 2 944 201 154 0 0 chr1 47184766 47184805 -150010627 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 944 297 0 0 0 chr1 47185145 47185178 -150010254 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 945 1139 148 29 5 chr1 47186773 47186983 -150008449 - Lx2 LINE L1 -8 6989 6775 2 945 7019 123 4 2 chr1 47186981 47188361 -150007071 - Lx2 LINE L1 -352 6645 5262 2 945 5881 94 26 11 chr1 47188359 47189961 -150005471 - L1VL4 LINE L1 -1742 1817 188 2 945 4213 161 67 13 chr1 47190188 47190514 -150004918 + Lx4A LINE L1 6237 6571 -487 2 945 3525 18 2 0 chr1 47190514 47190909 -150004523 + MTA_Mm LTR MaLR 1 396 0 2 945 8784 35 24 2 chr1 47190909 47191983 -150003449 + MTA_Mm-int LTR MaLR 1 1098 0 2 945 3477 23 2 0 chr1 47191983 47192378 -150003054 + MTA_Mm LTR MaLR 1 396 0 2 945 4213 161 67 13 chr1 47192378 47192827 -150002605 + Lx4A LINE L1 6572 7054 -4 2 945 605 152 86 22 chr1 47193688 47193864 -150001568 + MT2A LTR ERVL 1 351 -250 2 945 348 24 0 0 chr1 47193865 47193906 -150001526 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 945 289 196 0 0 chr1 47193923 47193974 -150001458 + MT2A LTR ERVL 551 601 0 2 945 370 292 89 58 chr1 47194788 47194972 -150000460 - B4 SINE B4 -18 274 78 2 945 25 31 0 0 chr1 47195205 47195237 -150000195 + AT_rich Low_complexity Low_complexity 1 32 0 2 945 2972 138 14 2 chr1 47195237 47195722 -149999710 - Lx3A LINE L1 -9 6972 6482 2 945 4154 108 32 12 chr1 47195902 47196579 -149998853 - Lx3A LINE L1 -508 6473 5783 2 945 2746 64 227 0 chr1 47196592 47197015 -149998417 - L1_Mus1 LINE L1 -6 6561 6043 2 945 4786 107 24 28 chr1 47197014 47197815 -149997617 - Lx3A LINE L1 -104 5782 4985 2 945 26 30 0 0 chr1 47198108 47198141 -149997291 + AT_rich Low_complexity Low_complexity 1 33 0 2 945 355 319 78 41 chr1 47198992 47199260 -149996172 + L1MC5 LINE L1 7617 7894 -67 2 945 470 239 69 58 chr1 47199282 47199449 -149995983 + B3A SINE B2 15 184 -11 2 945 21 57 0 0 chr1 47199492 47199527 -149995905 + AT_rich Low_complexity Low_complexity 1 35 0 2 945 26 0 0 0 chr1 47199794 47199820 -149995612 + AT_rich Low_complexity Low_complexity 1 26 0 2 945 35940 44 1 3 chr1 47200081 47206540 -149988892 - L1Md_T LINE L1 0 6585 43 2 945 366 309 110 113 chr1 47206676 47206968 -149988464 - B4 SINE B4 0 292 2 2 945 838 149 21 0 chr1 47207417 47207558 -149987874 + L1VL4 LINE L1 17 160 -6142 2 945 11553 161 34 5 chr1 47207554 47209981 -149985451 + Lx LINE L1 3580 6083 -571 2 945 4354 20 0 2 chr1 47209981 47210475 -149984957 + MT2_Mm LTR ERVL 1 493 0 2 945 5786 157 33 9 chr1 47210475 47211039 -149984393 + Lx LINE L1 6084 6654 0 2 945 5234 97 11 3 chr1 47211861 47212599 -149982833 - Lx LINE L1 -3 6651 5908 2 945 798 255 53 84 chr1 47212780 47212972 -149982460 + L1MA6 LINE L1 5857 6050 -250 2 945 2650 124 126 23 chr1 47212972 47213442 -149981990 - MURVY-LTR LTR ERV1 -1 518 1 2 945 798 255 53 84 chr1 47213442 47213702 -149981730 + L1MA6 LINE L1 6051 6295 -5 2 945 393 245 9 64 chr1 47214417 47214526 -149980906 - ORR1E LTR MaLR 0 359 257 2 945 893 129 24 12 chr1 47214527 47214692 -149980740 - Lx2 LINE L1 -226 6771 6605 2 945 22103 167 25 12 chr1 47214766 47220184 -149975248 - Lx2 LINE L1 -731 6266 770 2 945 726 274 35 19 chr1 47222077 47222341 -149973091 + MTE2b LTR MaLR 117 377 -2 2 945 219 36 0 0 chr1 47222384 47222412 -149973020 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 945 1148 90 0 0 chr1 47222412 47222556 -149972876 - B1_Mus1 SINE Alu -4 144 1 2 945 404 296 101 27 chr1 47223620 47223769 -149971663 + B3 SINE B2 4 163 -53 2 945 969 192 239 108 chr1 47224119 47224517 -149970915 - RMER6B LTR ERVK -11 450 1 2 945 1570 47 0 10 chr1 47225146 47225340 -149970092 - B2_Mm1t SINE B2 0 193 2 2 945 940 247 72 17 chr1 47225344 47225579 -149969853 - B4 SINE B4 -43 249 2 2 945 216 0 0 0 chr1 47225581 47225605 -149969827 + (T)n Simple_repeat Simple_repeat 1 24 0 2 945 304 378 67 35 chr1 47226274 47226529 -149968903 - L1ME1 LINE L1 -99 6080 5818 2 945 274 245 74 122 chr1 47226629 47226899 -149968533 - L1MD LINE L1 -1248 4898 4642 2 945 311 263 88 0 chr1 47227033 47227171 -149968261 - L1M4 LINE L1 -1656 4490 4339 2 945 225 156 91 125 chr1 47227504 47227592 -149967840 - YREP_Mm Unknown Unknown -1471 341 257 3 945 327 390 0 24 chr1 47227529 47227655 -149967777 + ID_B1 SINE B4 79 201 -23 3 945 465 312 9 9 chr1 47227544 47227657 -149967775 + B1F SINE Alu 13 125 -24 3 945 237 65 0 0 chr1 47227659 47227690 -149967742 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 3 945 247 280 53 21 chr1 47228261 47228356 -149967076 + BLACKJACK DNA AcHobo 84 181 -2763 3 945 1770 176 90 22 chr1 47228467 47228869 -149966563 - RLTR11A2 LTR ERVK 0 527 99 3 945 257 0 30 0 chr1 47228891 47228924 -149966508 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 945 732 291 124 118 chr1 47228956 47229594 -149965838 + BLACKJACK DNA AcHobo 788 1427 -1517 3 945 1099 82 0 13 chr1 47229594 47229743 -149965689 - B1_Mus1 SINE Alu 0 148 2 3 945 732 291 124 118 chr1 47229743 47229781 -149965651 + BLACKJACK DNA AcHobo 1428 1443 -1501 3 945 1710 81 51 4 chr1 47229781 47230016 -149965416 - L1_Mus2 LINE L1 -2 6564 6319 3 945 732 291 124 118 chr1 47230016 47230266 -149965166 + BLACKJACK DNA AcHobo 1444 1721 -1223 3 945 275 234 0 13 chr1 47230281 47230359 -149965073 + CT-rich Low_complexity Low_complexity 2 78 0 3 945 483 336 22 7 chr1 47230361 47230499 -149964933 - B1F2 SINE Alu -8 141 2 3 945 1002 189 62 13 chr1 47230602 47230908 -149964524 - L1_Mur3 LINE L1 -4323 1557 1237 3 945 1388 226 78 20 chr1 47230919 47231111 -149964321 - ORR1B2 LTR MaLR -3 364 153 3 945 894 88 0 0 chr1 47231111 47231236 -149964196 + (GA)n Simple_repeat Simple_repeat 2 126 0 3 945 1388 245 67 15 chr1 47231236 47231439 -149963993 - ORR1B2 LTR MaLR -215 152 2 3 945 655 201 48 83 chr1 47231449 47231677 -149963755 - Lx5 LINE L1 -3 7047 6828 3 945 278 184 0 28 chr1 47231781 47231887 -149963545 + T-rich Low_complexity Low_complexity 1 103 0 3 945 37163 52 12 3 chr1 47231991 47238457 -149956975 - L1Md_T LINE L1 0 6582 101 3 945 4601 57 13 0 chr1 47238458 47239056 -149956376 - L1_Mus1 LINE L1 -20 6547 5942 3 945 2158 53 7 0 chr1 47239050 47239331 -149956101 + L1_Mus1 LINE L1 5662 5944 -623 3 945 1381 249 85 35 chr1 47239334 47240198 -149955234 - L1_Mur3 LINE L1 -6569 1159 21 3 945 2061 272 95 22 chr1 47240331 47241316 -149954116 + BLACKJACK DNA AcHobo 1826 2882 -62 3 945 234 0 0 0 chr1 47241706 47241732 -149953700 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 945 477 0 0 0 chr1 47241733 47241786 -149953646 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 945 463 289 88 0 chr1 47241811 47241925 -149953507 - RSINE1 SINE B4 -5 160 37 3 945 279 331 52 0 chr1 47242099 47242192 -149953240 - PB1D10 SINE Alu -49 100 1 3 945 253 0 54 0 chr1 47243113 47243150 -149952282 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 3 945 394 331 69 69 chr1 47244186 47244205 -149951227 - B4A SINE B4 -47 245 150 3 945 524 241 84 42 chr1 47244205 47244348 -149951084 - B1_Mur3 SINE Alu 0 149 1 3 945 394 331 69 69 chr1 47244348 47244361 -149951071 - B4A SINE B4 -47 149 71 3 945 3238 53 0 10 chr1 47244417 47244817 -149950615 + MTA_Mm LTR MaLR 1 396 0 3 945 326 319 107 49 chr1 47244824 47245421 -149950011 - L1ME1 LINE L1 -227 5952 5321 3 945 2313 203 25 45 chr1 47245620 47245664 -149949768 - RLTR28 LTR ERVL -14 510 469 3 945 1087 88 0 0 chr1 47245664 47245801 -149949631 + B1_Mus2 SINE Alu 2 138 -9 3 945 411 21 0 0 chr1 47245801 47245849 -149949583 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 945 2313 203 25 45 chr1 47245849 47246319 -149949113 - RLTR28 LTR ERVL -56 468 6 3 945 231 88 0 0 chr1 47246320 47246354 -149949078 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 945 1094 264 40 17 chr1 47246364 47246661 -149948771 - Lx5 LINE L1 -9 7041 6738 3 945 1871 193 19 17 chr1 47246660 47247077 -149948355 + L1_Mur2 LINE L1 4550 4967 -910 3 945 1088 198 100 4 chr1 47247080 47247319 -149948113 + L1_Mur2 LINE L1 5271 5532 -345 3 945 183 366 66 39 chr1 47248732 47248914 -149946518 + MIR3 SINE MIR 17 203 -5 3 945 30 0 0 0 chr1 47248961 47248991 -149946441 + AT_rich Low_complexity Low_complexity 1 30 0 3 945 351 210 19 56 chr1 47249108 47249198 -149946234 + MTE2b LTR MaLR 1 92 -287 3 945 948 240 121 22 chr1 47249577 47249850 -149945582 + MTE2b LTR MaLR 80 379 0 3 945 3220 18 56 5 chr1 47250957 47251348 -149944084 - IAPLTR2a LTR ERVK 0 411 1 3 945 22 0 0 0 chr1 47251976 47251998 -149943434 + AT_rich Low_complexity Low_complexity 1 22 0 3 945 291 302 0 94 chr1 47252245 47252362 -149943070 + PB1D10 SINE Alu 12 117 0 3 945 318 106 0 0 chr1 47252580 47252627 -149942805 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 945 387 0 0 0 chr1 47252627 47252669 -149942763 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 945 473 295 9 0 chr1 47252674 47252779 -149942653 - RSINE1 SINE B4 -57 108 3 3 945 2163 142 27 54 chr1 47253175 47253585 -149941847 + RMER4A LTR ERVK 16 414 -52 3 945 200 132 0 26 chr1 47253585 47253624 -149941808 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 945 2516 215 26 30 chr1 47254849 47255564 -149939868 - Lx4B LINE L1 -26 6974 6253 3 945 4187 184 19 15 chr1 47255560 47256676 -149938756 - L1_Mur1 LINE L1 -3671 2206 1087 3 945 2167 125 22 0 chr1 47256677 47256997 -149938435 + ORR1A2 LTR MaLR 1 327 0 3 945 5509 159 87 6 chr1 47256997 47258072 -149937360 + ORR1A2-int LTR MaLR 1 1163 -800 3 945 1878 139 4 0 chr1 47258059 47258340 -149937092 + ORR1A2 LTR MaLR 65 346 0 3 945 875 229 1 1 chr1 47258340 47258555 -149936877 - L1_Mur1 LINE L1 -5894 1090 876 3 945 2588 249 70 76 chr1 47259019 47259183 -149936249 + Lx6 LINE L1 6560 6723 -737 3 945 245 29 0 29 chr1 47259183 47259218 -149936214 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 945 2588 249 70 76 chr1 47259218 47259652 -149935780 + Lx6 LINE L1 6724 7161 -299 3 945 4396 114 90 6 chr1 47259652 47260341 -149935091 + Lx LINE L1 5908 6654 0 3 945 2588 249 70 76 chr1 47260341 47260634 -149934798 + Lx6 LINE L1 7162 7446 -14 3 945 198 387 20 53 chr1 47260852 47261002 -149934430 - MER5A DNA MER1_type -30 159 15 3 945 224 213 16 0 chr1 47261103 47261164 -149934268 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 3 945 224 204 0 22 chr1 47262581 47262626 -149932806 + CT-rich Low_complexity Low_complexity 4 47 0 3 945 28 48 0 0 chr1 47263808 47263850 -149931582 + AT_rich Low_complexity Low_complexity 1 42 0 3 945 1638 198 42 68 chr1 47263868 47264252 -149931180 - ORR1D1 LTR MaLR 0 374 1 3 945 1868 134 112 22 chr1 47264338 47264705 -149930727 + RLTR9D LTR ERVK 1 400 -3 3 945 375 317 0 16 chr1 47264751 47264876 -149930556 - Lx8 LINE L1 -149 7324 7202 3 945 4234 184 96 26 chr1 47264876 47265804 -149929628 + RMER19B LTR ERVK 1 902 0 3 945 1002 272 24 17 chr1 47265812 47266104 -149929328 - Lx8 LINE L1 -285 7188 6895 3 945 279 312 79 33 chr1 47266465 47266680 -149928752 + Lx8 LINE L1 5696 5920 -1553 3 945 2088 4 0 0 chr1 47266776 47267018 -149928414 - L1Md_T LINE L1 -819 5064 4823 3 945 4332 15 0 0 chr1 47267016 47267537 -149927895 + L1Md_T LINE L1 5066 5586 -297 3 945 8051 54 0 0 chr1 47267537 47268533 -149926899 + L1Md_T LINE L1 5587 6582 0 3 945 24 0 0 0 chr1 47270905 47270929 -149924503 + AT_rich Low_complexity Low_complexity 1 24 0 3 945 518 391 84 46 chr1 47271705 47272247 -149923185 + MLT1G3 LTR MaLR 36 591 0 3 945 23 0 0 0 chr1 47273347 47273370 -149922062 + AT_rich Low_complexity Low_complexity 1 23 0 3 945 2515 214 146 66 chr1 47274038 47274813 -149920619 - RMER13B LTR ERVK -70 838 2 3 945 444 348 99 14 chr1 47276137 47276444 -149918988 + ORR1E LTR MaLR 2 348 -11 3 945 327 285 53 97 chr1 47277386 47277592 -149917840 - MLT1A LTR MaLR -5 369 173 3 945 366 23 0 0 chr1 47278499 47278542 -149916890 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 945 930 43 0 0 chr1 47278552 47278667 -149916765 + (GGGAGA)n Simple_repeat Simple_repeat 1 115 0 3 945 1082 318 51 16 chr1 47278704 47279132 -149916300 + Lx8 LINE L1 6239 6681 -792 3 945 25 0 0 0 chr1 47279218 47279243 -149916189 + AT_rich Low_complexity Low_complexity 1 25 0 3 945 21 0 0 0 chr1 47279735 47279756 -149915676 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 695 267 44 48 chr1 47280040 47280292 -149915140 - RLTR16 LTR ERVK -231 274 24 3 945 2137 123 15 6 chr1 47280299 47280633 -149914799 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 945 5516 64 13 18 chr1 47280635 47281410 -149914022 - IAPEz-int LTR ERVK -2 6479 5709 3 945 2974 20 0 0 chr1 47281401 47281758 -149913674 - IAPEz-int LTR ERVK -2124 4357 4001 3 945 19833 55 40 19 chr1 47281756 47284467 -149910965 - IAPEz-int LTR ERVK -3707 2774 8 3 945 2191 118 15 6 chr1 47284467 47284801 -149910631 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 945 280 244 269 41 chr1 47284813 47284984 -149910448 - MER2 DNA MER2_type -64 281 72 3 945 315 0 0 0 chr1 47284999 47285034 -149910398 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3 945 1201 36 0 0 chr1 47285036 47285176 -149910256 - B1_Mm SINE Alu -6 141 2 3 945 712 267 10 23 chr1 47286019 47286209 -149909223 - B3A SINE B2 -27 189 3 3 945 233 234 75 0 chr1 47286459 47286553 -149908879 + (GGGTG)n Simple_repeat Simple_repeat 1 101 0 3 945 3879 208 19 4 chr1 47287077 47287803 -149907629 + Lx5 LINE L1 6307 7043 -7 3 945 212 86 29 0 chr1 47287811 47287846 -149907586 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 3 945 50 51 0 0 chr1 47287945 47288023 -149907409 + AT_rich Low_complexity Low_complexity 1 78 0 3 945 2299 132 93 7 chr1 47288097 47288624 -149906808 + L1VL4 LINE L1 204 775 -5527 3 945 3434 28 5 0 chr1 47288624 47289018 -149906414 - MTA_Mm LTR MaLR 0 396 1 3 945 461 33 0 0 chr1 47289018 47289079 -149906353 - MTA_Mm-int LTR MaLR 0 1098 1038 3 945 11667 146 41 5 chr1 47289079 47291284 -149904148 + L1_Mm LINE L1 1872 4155 -1728 3 945 4704 140 38 2 chr1 47291295 47292113 -149903319 + Lx2 LINE L1 5795 6641 -356 3 945 1223 145 72 5 chr1 47292114 47292322 -149903110 + Lx2 LINE L1 6775 6996 -1 3 945 1197 58 0 0 chr1 47292509 47292663 -149902769 + (TCTA)n Simple_repeat Simple_repeat 2 155 0 3 945 34 55 0 0 chr1 47292711 47292766 -149902666 + AT_rich Low_complexity Low_complexity 1 55 0 3 945 239 280 53 53 chr1 47292847 47292960 -149902472 + RMER12 LTR ERVK 748 860 -462 3 945 321 26 0 0 chr1 47292968 47293006 -149902426 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 945 333 0 0 0 chr1 47293006 47293043 -149902389 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 945 467 329 48 12 chr1 47293047 47293213 -149902219 - ORR1E LTR MaLR -187 172 1 3 945 404 303 142 43 chr1 47293278 47293695 -149901737 - L1M5 LINE L1 -370 5754 5297 3 945 3232 221 63 35 chr1 47293824 47294730 -149900702 - Lx6 LINE L1 -543 6917 5987 3 945 761 159 58 0 chr1 47294734 47294872 -149900560 - Lx6 LINE L1 -196 5684 5539 3 945 3008 100 2 11 chr1 47294876 47295330 -149900102 - Lx LINE L1 -117 6537 6088 3 945 2812 176 122 3 chr1 47295332 47296043 -149899389 - Lx6 LINE L1 -330 5550 4755 3 945 324 70 0 0 chr1 47296043 47296086 -149899346 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 945 7522 61 1 0 chr1 47296090 47297122 -149898310 - L1_Mus1 LINE L1 0 6567 5535 3 945 363 235 136 10 chr1 47297122 47297225 -149898207 - ID_B1 SINE B4 -27 197 82 3 945 511 129 0 0 chr1 47297155 47297225 -149898207 - B1_Mus2 SINE Alu -77 70 1 3 945 302 241 21 84 chr1 47297225 47297250 -149898182 - MT2B LTR ERVL -374 227 139 3 945 323 241 13 0 chr1 47297255 47297334 -149898098 - Lx6 LINE L1 -1151 4729 4650 3 945 29050 23 0 1 chr1 47297360 47301635 -149893797 - L1Md_A LINE L1 0 6582 2311 3 945 37746 33 1 15 chr1 47301633 47307828 -149887604 - L1Md_A LINE L1 0 6582 478 4 945 898 17 0 0 chr1 47307857 47307972 -149887460 - L1Md_T LINE L1 0 6582 6468 4 945 1848 187 31 2 chr1 47307972 47308391 -149887041 - Lx6 LINE L1 -1339 4541 4111 3 945 1214 159 124 3 chr1 47308412 47308703 -149886729 - Lx6 LINE L1 -2326 3554 3229 3 945 567 181 17 0 chr1 47308706 47308822 -149886610 + L1_Mur3 LINE L1 2183 2300 -3580 4 945 743 197 31 76 chr1 47308849 47309140 -149886292 + L1_Mur3 LINE L1 2796 3073 -2807 4 945 2195 196 70 18 chr1 47309149 47309243 -149886189 - Lx6 LINE L1 -3694 2186 2092 3 945 192 97 0 0 chr1 47309243 47309274 -149886158 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 945 2195 196 70 18 chr1 47309274 47309791 -149885641 - Lx6 LINE L1 -3789 2091 1545 3 945 883 287 90 3 chr1 47309782 47310114 -149885318 + Lx3C LINE L1 6612 6972 -4 4 945 1183 218 36 12 chr1 47310127 47310462 -149884970 - Lx6 LINE L1 -4331 1549 1207 3 945 219 69 0 0 chr1 47310472 47310501 -149884931 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 945 830 180 12 0 chr1 47310505 47310677 -149884755 + CT-rich Low_complexity Low_complexity 3 176 0 4 945 450 0 0 0 chr1 47310677 47310727 -149884705 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 4 945 688 258 86 40 chr1 47310733 47311011 -149884421 - Lx6 LINE L1 -7334 394 104 3 945 216 0 0 0 chr1 47311491 47311515 -149883917 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 945 1155 55 0 20 chr1 47311568 47311717 -149883715 - B1_Mm SINE Alu 0 147 2 4 945 481 234 35 18 chr1 47311931 47312044 -149883388 - PB1D10 SINE Alu -2 115 1 4 945 213 204 0 22 chr1 47312265 47312310 -149883122 + CT-rich Low_complexity Low_complexity 1 44 0 4 945 242 314 69 11 chr1 47312312 47312399 -149883033 - BC1_Mm scRNA scRNA -46 106 15 4 945 228 340 65 39 chr1 47312925 47313078 -149882354 + MLT1B LTR MaLR 8 164 -210 4 945 270 300 81 9 chr1 47313122 47313234 -149882198 + MLT1B LTR MaLR 288 442 -25 4 945 1782 108 0 0 chr1 47314297 47314556 -149880876 + Lx2 LINE L1 6385 6643 -354 4 945 1349 143 23 0 chr1 47314556 47314773 -149880659 + Lx2 LINE L1 6775 6996 -1 4 945 317 313 62 17 chr1 47315267 47315446 -149879986 - L1MD3 LINE L1 -16 7979 7793 4 945 898 282 107 40 chr1 47315550 47315897 -149879535 - MTE2b LTR MaLR 0 379 10 4 945 322 308 107 8 chr1 47315914 47316035 -149879397 - MLT1D LTR MaLR 0 505 373 4 945 235 225 84 0 chr1 47316043 47316114 -149879318 - MLT1D-int LTR MaLR -572 917 841 4 945 232 326 20 31 chr1 47316120 47316218 -149879214 + MLT1B LTR MaLR 531 627 0 4 946 564 315 57 74 chr1 47318643 47318996 -149876436 - L3 LINE CR1 -607 3882 3536 4 946 419 253 11 0 chr1 47319356 47319447 -149875985 - U6 snRNA snRNA -3 104 13 4 946 546 253 58 42 chr1 47319629 47319819 -149875613 - B3A SINE B2 -4 194 2 4 946 461 17 0 17 chr1 47319861 47319920 -149875512 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 946 545 253 121 5 chr1 47320609 47320808 -149874624 + L3b LINE CR1 118 339 -143 4 946 347 277 216 17 chr1 47320906 47321082 -149874350 - B3 SINE B2 -5 211 1 4 946 931 321 22 44 chr1 47321315 47321768 -149873664 - Lx8 LINE L1 -147 7326 6884 4 946 544 291 96 63 chr1 47321768 47322194 -149873238 - Lx8 LINE L1 -1167 6306 5867 4 946 2792 78 44 0 chr1 47322203 47322586 -149872846 - MTB LTR MaLR 0 400 1 4 946 6275 135 96 18 chr1 47322586 47322762 -149872670 - MTB-int LTR MaLR 0 1258 1038 4 946 2279 71 9 16 chr1 47322762 47323077 -149872355 - L1_Mus1 LINE L1 0 6567 6255 4 946 6275 135 96 18 chr1 47323077 47324065 -149871367 - MTB-int LTR MaLR -221 1037 3 4 946 2882 84 8 2 chr1 47324067 47324461 -149870971 - MTB LTR MaLR -2 398 3 4 946 856 210 109 0 chr1 47324461 47324699 -149870733 - Lx7 LINE L1 -1834 5862 5599 4 946 343 295 96 23 chr1 47325158 47325335 -149870097 + L1M5 LINE L1 2963 3152 -2994 4 946 27 0 0 0 chr1 47325544 47325571 -149869861 + AT_rich Low_complexity Low_complexity 1 27 0 4 946 2283 226 100 46 chr1 47325741 47326503 -149868929 - Lx9 LINE L1 0 7644 6842 4 946 543 53 0 0 chr1 47327553 47327628 -149867804 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 946 225 239 29 43 chr1 47329152 47329222 -149866210 + ID4_ SINE ID 4 72 -11 4 946 256 118 191 45 chr1 47329374 47329463 -149865969 - Lx4A LINE L1 -1 7057 6956 4 946 1260 128 60 0 chr1 47329464 47329682 -149865750 + Lx4A LINE L1 6578 6808 -250 4 946 263 294 113 0 chr1 47330037 47330134 -149865298 - PB1D10 SINE Alu -31 118 10 4 946 406 284 19 45 chr1 47332491 47332646 -149862786 - MIRc SINE MIR -92 176 26 4 946 291 215 63 36 chr1 47332897 47333008 -149862424 + Kanga1d DNA Tc2 371 484 -125 4 946 217 297 26 10 chr1 47333195 47333321 -149862111 + CT-rich Low_complexity Low_complexity 1 127 0 4 946 279 303 10 48 chr1 47333438 47333542 -149861890 - MARNA DNA Mariner -419 167 68 4 946 392 0 0 20 chr1 47334230 47334279 -149861153 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 946 258 207 0 0 chr1 47334678 47334736 -149860696 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 4 946 254 354 38 12 chr1 47336500 47336580 -149858852 + ID4_ SINE ID 2 83 0 4 946 673 123 0 26 chr1 47338380 47338497 -149856935 - L1_Mus1 LINE L1 -1 6566 6453 4 946 714 226 0 0 chr1 47338544 47338712 -149856720 + CT-rich Low_complexity Low_complexity 3 170 0 4 946 629 218 0 70 chr1 47338714 47338872 -149856560 - B1_Mur2 SINE Alu 0 149 3 4 946 742 185 0 15 chr1 47338872 47339004 -149856428 + B1_Mur4 SINE Alu 15 144 -6 4 946 348 35 0 17 chr1 47340192 47340251 -149855181 + L1Md_F2 LINE L1 6525 6582 0 4 946 252 0 0 0 chr1 47340377 47340405 -149855027 + (T)n Simple_repeat Simple_repeat 1 28 0 4 946 192 40 0 0 chr1 47341827 47341852 -149853580 + (T)n Simple_repeat Simple_repeat 1 25 0 4 946 22 35 0 0 chr1 47343129 47343158 -149852274 + AT_rich Low_complexity Low_complexity 1 29 0 4 946 388 112 50 10 chr1 47343282 47343381 -149852051 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 4 946 279 0 0 0 chr1 47343383 47343414 -149852018 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 946 298 310 45 37 chr1 47343593 47343727 -149851705 + B1F SINE Alu 1 135 -14 4 946 224 251 16 56 chr1 47344141 47344212 -149851220 - B1F1 SINE Alu -70 79 1 4 946 278 26 26 0 chr1 47344982 47345021 -149850411 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 4 946 52 17 0 0 chr1 47346802 47346861 -149848571 + AT_rich Low_complexity Low_complexity 1 59 0 4 946 241 263 48 78 chr1 47349659 47349762 -149845670 + RMER15 LTR ERVL 62 161 -414 4 946 296 345 16 25 chr1 47349786 47349908 -149845524 + RMER15 LTR ERVL 361 481 -94 4 946 22 0 0 0 chr1 47350044 47350066 -149845366 + AT_rich Low_complexity Low_complexity 1 22 0 4 946 282 321 58 35 chr1 47350125 47350212 -149845220 - RSINE1 SINE B4 -2 163 75 4 946 21 0 0 0 chr1 47353839 47353860 -149841572 + AT_rich Low_complexity Low_complexity 1 21 0 4 946 1074 75 7 0 chr1 47353953 47354099 -149841333 + B1_Mm SINE Alu 1 147 0 4 946 330 0 60 0 chr1 47354104 47354154 -149841278 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 4 946 22 0 0 0 chr1 47354668 47354690 -149840742 + AT_rich Low_complexity Low_complexity 1 22 0 4 946 324 314 12 82 chr1 47354802 47354972 -149840460 + RSINE1 SINE B4 3 160 -5 4 946 1386 53 5 11 chr1 47355974 47356163 -149839269 + B2_Mm2 SINE B2 7 194 -1 4 946 337 282 55 31 chr1 47356445 47356573 -149838859 + Lx8 LINE L1 6629 6759 -937 4 946 625 256 166 48 chr1 47356828 47357099 -149838333 + RMER15 LTR ERVL 273 575 0 4 946 181 373 51 0 chr1 47357416 47357534 -149837898 + MIRb SINE MIR 74 197 -71 4 946 700 309 10 63 chr1 47358126 47358333 -149837099 - ID_B1 SINE B4 -25 199 4 4 946 265 242 137 0 chr1 47359640 47359735 -149835697 + LTR50 LTR ERVL 62 169 -626 4 946 1721 280 36 5 chr1 47359904 47360353 -149835079 - Lx6 LINE L1 -17 7443 6981 4 946 249 321 101 62 chr1 47360355 47360534 -149834898 + LTR50 LTR ERVL 356 541 -254 4 946 786 97 0 0 chr1 47360637 47360750 -149834682 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 4 946 2425 187 37 23 chr1 47361107 47361621 -149833811 - RLTR12B LTR ERVK -7 521 1 4 946 1004 285 14 14 chr1 47361850 47362128 -149833304 - B4A SINE B4 0 292 15 4 946 498 301 56 42 chr1 47362154 47362277 -149833155 - B3A SINE B2 -30 168 43 4 946 813 265 62 57 chr1 47362277 47362649 -149832783 + ORR1D1 LTR MaLR 1 374 0 4 946 498 301 56 42 chr1 47362649 47362667 -149832765 - B3A SINE B2 -156 42 25 4 946 30 59 0 0 chr1 47362909 47362960 -149832472 + AT_rich Low_complexity Low_complexity 1 51 0 4 946 29 47 0 0 chr1 47362979 47363022 -149832410 + AT_rich Low_complexity Low_complexity 1 43 0 4 946 341 305 31 62 chr1 47363205 47363366 -149832066 - MLT2B3 LTR ERVL 0 554 399 4 946 385 244 136 6 chr1 47363413 47363531 -149831901 - Lx9 LINE L1 -8 7636 7501 4 946 282 73 0 0 chr1 47363531 47363572 -149831860 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 946 385 244 136 6 chr1 47363572 47363622 -149831810 - Lx9 LINE L1 -144 7500 7446 4 946 2653 93 62 10 chr1 47363687 47364087 -149831345 - BGLII LTR ERVK 0 421 1 4 946 27 0 0 0 chr1 47365445 47365472 -149829960 + AT_rich Low_complexity Low_complexity 1 27 0 4 946 346 317 62 53 chr1 47366062 47366342 -149829090 + ORR1E LTR MaLR 84 379 0 4 946 696 132 141 0 chr1 47366892 47367013 -149828419 + B1_Mus1 SINE Alu 10 147 -1 4 946 237 397 0 66 chr1 47367540 47367691 -149827741 - AmnSINE1 SINE SINE -8 567 427 4 946 21 36 0 0 chr1 47368073 47368101 -149827331 + AT_rich Low_complexity Low_complexity 1 28 0 4 946 525 170 0 0 chr1 47368734 47368877 -149826555 + CT-rich Low_complexity Low_complexity 1 143 0 4 946 396 0 0 0 chr1 47369817 47369861 -149825571 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 946 448 305 56 21 chr1 47369863 47370007 -149825425 - RSINE1 SINE B4 -14 151 3 4 946 231 61 0 0 chr1 47370098 47370131 -149825301 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 946 909 105 7 57 chr1 47370131 47370272 -149825160 - B1_Mus2 SINE Alu -12 135 2 4 946 383 281 35 0 chr1 47371533 47371647 -149823785 + MLT1-int LTR MaLR 510 627 -1108 4 946 723 332 58 47 chr1 47371989 47372369 -149823063 + MLT1-int LTR MaLR 958 1630 -105 4 946 428 354 50 22 chr1 47372404 47372586 -149822846 + ORR1E LTR MaLR 4 190 -169 4 946 246 32 0 0 chr1 47373092 47373123 -149822309 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 946 261 0 0 0 chr1 47373123 47373151 -149822281 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 946 367 400 54 40 chr1 47373980 47374329 -149821103 - ORR1E LTR MaLR -4 355 2 4 946 255 61 0 0 chr1 47374828 47374861 -149820571 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 946 1947 125 7 24 chr1 47375781 47376118 -149819314 + ORR1A2 LTR MaLR 23 359 -8 4 946 5694 158 41 14 chr1 47376122 47377773 -149817659 + ORR1A2-int LTR MaLR 1 1765 -198 4 946 1198 127 45 40 chr1 47377773 47377995 -149817437 - Lx2 LINE L1 0 6997 6775 4 946 855 260 42 53 chr1 47377995 47378033 -149817399 + ORR1A2-int LTR MaLR 1097 1130 -240 4 946 17386 185 57 47 chr1 47378033 47384196 -149811236 - Lx2 LINE L1 -392 6605 276 5 946 1402 174 48 107 chr1 47384240 47384632 -149810800 - L1_Mur2 LINE L1 -1536 4341 3973 5 946 6406 209 33 164 chr1 47385051 47385536 -149809896 - L1_Mur2 LINE L1 -1904 3976 3489 5 946 242 29 29 0 chr1 47385536 47385571 -149809861 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 5 946 6883 183 43 73 chr1 47385571 47387693 -149807739 - L1_Mur2 LINE L1 -2392 3488 1708 5 946 1438 232 106 47 chr1 47387699 47388211 -149807221 + RLTR20B2 LTR ERVK 19 560 0 5 946 2055 208 41 13 chr1 47388213 47389130 -149806302 - L1_Mur2 LINE L1 -4168 1709 768 5 946 4545 219 37 34 chr1 47389434 47389828 -149805604 - L1_Mur3 LINE L1 -3386 2494 2086 5 946 246 62 0 0 chr1 47389828 47389860 -149805572 + (TTG)n Simple_repeat Simple_repeat 1 32 0 5 946 4545 219 37 34 chr1 47389860 47389872 -149805560 - L1_Mur3 LINE L1 -3795 2085 2076 5 946 369 0 0 0 chr1 47389872 47389913 -149805519 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 946 4545 224 49 29 chr1 47389913 47391107 -149804325 - L1_Mur3 LINE L1 -3805 2075 859 5 946 183 42 0 0 chr1 47391344 47391368 -149804064 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 946 757 64 16 23 chr1 47391368 47391496 -149803936 + (GAGAA)n Simple_repeat Simple_repeat 5 131 0 5 946 204 143 0 0 chr1 47392246 47392288 -149803144 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 946 229 250 0 0 chr1 47392289 47392333 -149803099 + polypyrimidine Low_complexity Low_complexity 4 47 0 5 946 256 238 52 0 chr1 47392337 47392404 -149803028 - B1F SINE Alu -7 142 36 5 946 563 224 94 14 chr1 47392451 47392664 -149802768 - L1ME2 LINE L1 -286 5878 5649 5 946 515 297 103 23 chr1 47392677 47392891 -149802541 + MLT1A LTR MaLR 131 361 -13 5 946 1173 113 0 0 chr1 47392932 47393109 -149802323 + (TTC)n Simple_repeat Simple_repeat 3 179 0 5 946 228 77 38 19 chr1 47393449 47393502 -149801930 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 946 648 26 0 0 chr1 47393873 47393951 -149801481 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 946 3828 103 31 3 chr1 47395402 47395986 -149799446 - L1_Mus3 LINE L1 -4 6634 6035 5 946 572 257 144 52 chr1 47396191 47396553 -149798879 - L1MA6 LINE L1 -1 6299 5905 5 946 228 281 0 0 chr1 47396577 47396634 -149798798 - B3A SINE B2 -139 59 3 5 946 22 0 0 0 chr1 47397584 47397606 -149797826 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 211 258 288 0 chr1 47399272 47399338 -149796094 - B1F SINE Alu -56 93 9 5 946 2921 58 39 5 chr1 47399700 47400083 -149795349 - MTA_Mm LTR MaLR 0 396 1 5 946 372 297 64 107 chr1 47400176 47400410 -149795022 + MLT1A1 LTR MaLR 172 395 -13 5 946 1910 38 29 0 chr1 47400561 47400800 -149794632 - L1Md_A LINE L1 0 6582 6337 5 946 450 0 0 0 chr1 47400858 47400908 -149794524 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 946 4509 26 4 0 chr1 47401117 47401650 -149793782 + L1Md_A LINE L1 6048 6582 0 5 946 25 0 0 0 chr1 47402187 47402212 -149793220 + AT_rich Low_complexity Low_complexity 1 25 0 5 946 1052 305 170 21 chr1 47403130 47403972 -149791460 - Charlie2b DNA MER1_type -466 2316 1350 5 946 458 297 0 55 chr1 47404309 47404473 -149790959 + Lx7 LINE L1 7144 7298 -398 5 946 666 118 0 0 chr1 47404555 47404657 -149790775 + (GGGA)n Simple_repeat Simple_repeat 3 104 0 5 946 906 82 0 0 chr1 47404702 47404824 -149790608 + B1_Mus1 SINE Alu 26 147 -1 5 946 26 64 0 0 chr1 47404950 47404997 -149790435 + AT_rich Low_complexity Low_complexity 1 47 0 5 946 267 54 0 0 chr1 47406067 47406104 -149789328 + (T)n Simple_repeat Simple_repeat 1 37 0 5 946 1166 283 94 58 chr1 47406402 47407006 -149788426 + L1MC1 LINE L1 5396 6021 -312 5 946 340 310 160 0 chr1 47407032 47407232 -149788200 + L1MC1 LINE L1 6083 6314 -19 5 946 491 138 11 0 chr1 47407320 47407407 -149788025 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 946 22 0 0 0 chr1 47408113 47408135 -149787297 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 9611 86 20 10 chr1 47408347 47410301 -149785131 - MusHAL1 LINE L1 -1171 2182 207 5 946 3384 222 57 21 chr1 47410295 47411071 -149784361 - Lx6 LINE L1 -676 6784 5981 5 946 200 250 16 16 chr1 47412184 47412245 -149783187 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 5 946 22 0 0 0 chr1 47414589 47414611 -149780821 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 473 342 13 33 chr1 47414665 47414816 -149780616 + RSINE1 SINE B4 15 162 -3 5 946 198 143 0 0 chr1 47414846 47414881 -149780551 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 946 325 326 49 7 chr1 47415950 47416092 -149779340 + Lx9 LINE L1 6301 6448 -1196 5 946 1656 202 49 35 chr1 47416677 47417046 -149778386 - ORR1D1 LTR MaLR 0 374 1 5 946 471 338 32 26 chr1 47417522 47417677 -149777755 + RSINE1 SINE B4 8 163 -2 5 946 444 127 0 0 chr1 47418008 47418087 -149777345 - L1Md_F2 LINE L1 -2 6580 6502 5 946 2105 61 14 0 chr1 47418092 47418387 -149777045 + L1_Mm LINE L1 3008 3306 -2577 5 946 432 0 0 0 chr1 47418805 47418853 -149776579 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 5 946 331 389 31 15 chr1 47418958 47419154 -149776278 - MLT1D LTR MaLR -55 450 252 5 946 280 246 0 0 chr1 47419334 47419395 -149776037 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 946 24 0 0 0 chr1 47419846 47419870 -149775562 + AT_rich Low_complexity Low_complexity 1 24 0 5 946 252 0 0 0 chr1 47420883 47420911 -149774521 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 5 946 218 281 18 0 chr1 47424046 47424103 -149771329 + GA-rich Low_complexity Low_complexity 1 58 0 5 946 6279 207 37 51 chr1 47424939 47426357 -149769075 - Lx5 LINE L1 -3 7047 5650 5 946 1148 178 9 18 chr1 47426358 47426587 -149768845 + L1_Mur2 LINE L1 4468 4694 -1183 5 946 255 61 0 0 chr1 47426655 47426688 -149768744 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 5 946 5122 104 16 32 chr1 47426830 47427616 -149767816 + Lx3_Mus LINE L1 6228 7001 -8 5 946 201 221 0 0 chr1 47427945 47428013 -149767419 + A-rich Low_complexity Low_complexity 1 68 0 5 946 1214 189 40 0 chr1 47428167 47428394 -149767038 + ORR1C1 LTR MaLR 3 238 -140 5 946 254 207 52 0 chr1 47428394 47428452 -149766980 + CT-rich Low_complexity Low_complexity 3 63 0 5 946 32 67 0 0 chr1 47429043 47429103 -149766329 + AT_rich Low_complexity Low_complexity 1 60 0 5 946 353 98 0 32 chr1 47429514 47429577 -149765855 - L1Md_F2 LINE L1 -12 6570 6510 5 946 762 283 5 9 chr1 47429779 47430000 -149765432 + L1VL4 LINE L1 158 377 -5925 5 946 600 137 0 0 chr1 47430005 47430107 -149765325 + MusHAL1 LINE L1 491 592 -2120 5 946 16474 173 58 13 chr1 47430085 47433376 -149762056 + L1_Mur1 LINE L1 2164 5602 -284 5 946 575 180 109 0 chr1 47433384 47433512 -149761920 - ORR1B1 LTR MaLR -246 148 7 5 946 612 336 27 62 chr1 47433529 47433758 -149761674 + Lx8 LINE L1 7084 7305 -168 5 946 2540 106 88 90 chr1 47433758 47434162 -149761270 - RLTR47_MM LTR ERV1 -2 530 121 5 946 1087 90 7 0 chr1 47434162 47434307 -149761125 + B1_Mm SINE Alu 2 147 0 5 946 2540 106 88 90 chr1 47434307 47434433 -149760999 - RLTR47_MM LTR ERV1 -412 120 1 5 946 612 336 27 62 chr1 47434433 47434571 -149760861 + Lx8 LINE L1 7306 7438 -35 5 946 315 71 0 0 chr1 47434634 47434676 -149760756 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 946 22 0 0 0 chr1 47434684 47434706 -149760726 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 812 97 214 0 chr1 47434966 47435111 -149760321 - B2_Mm2 SINE B2 -19 176 1 5 946 1213 298 82 79 chr1 47435358 47435905 -149759527 + MER68 LTR ERVL 15 563 0 5 946 1631 190 69 0 chr1 47436211 47436516 -149758916 - Lx5 LINE L1 0 7050 6725 5 946 1666 213 12 29 chr1 47436517 47436861 -149758571 + Lx5 LINE L1 6348 6685 -365 5 946 677 284 36 43 chr1 47437157 47437437 -149757995 - RLTR15 LTR ERVK -37 322 45 5 946 209 109 0 21 chr1 47437594 47437641 -149757791 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 5 946 5349 111 83 15 chr1 47437653 47438520 -149756912 - Lx LINE L1 -7 6647 5722 5 946 239 286 0 28 chr1 47438850 47438922 -149756510 - RLTR13A2 LTR ERVK -884 74 5 5 946 1943 206 73 20 chr1 47439709 47440200 -149755232 - Lx9 LINE L1 -7 7637 7121 5 946 5579 56 1 3 chr1 47440203 47440897 -149754535 - L1_Mus1 LINE L1 -1 6566 5874 5 946 4141 88 0 11 chr1 47440901 47441466 -149753966 + L1_Mus1 LINE L1 5301 5859 -24 5 946 649 210 29 0 chr1 47441517 47441655 -149753777 + Lx9 LINE L1 6942 7083 -561 5 946 28 0 0 0 chr1 47441658 47441686 -149753746 + AT_rich Low_complexity Low_complexity 1 28 0 5 946 4651 170 44 22 chr1 47441686 47442565 -149752867 - Lx4A LINE L1 -1 7057 6159 5 946 234 0 0 0 chr1 47442663 47442689 -149752743 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 946 457 286 90 58 chr1 47442815 47443004 -149752428 - B3A SINE B2 -1 197 3 5 946 396 0 0 0 chr1 47443013 47443057 -149752375 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 946 6416 109 24 31 chr1 47444211 47445824 -149749608 - Lx3_Mus LINE L1 -465 6544 4929 5 946 369 0 0 0 chr1 47445871 47445912 -149749520 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 947 221 365 19 0 chr1 47448549 47448653 -149746779 - MER5A DNA MER1_type -30 159 54 5 947 183 129 0 0 chr1 47448943 47448974 -149746458 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 947 413 50 17 0 chr1 47449069 47449129 -149746303 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 947 227 278 156 0 chr1 47449177 47449267 -149746165 + Tigger7 DNA MER2_type 12 115 -2376 5 947 914 214 104 9 chr1 47449312 47449534 -149745898 - ORR1E LTR MaLR -6 353 111 5 947 902 70 124 0 chr1 47449967 47450096 -149745336 + B1_Mus1 SINE Alu 2 146 -2 5 947 716 61 0 10 chr1 47450096 47450195 -149745237 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 5 947 234 0 0 0 chr1 47450257 47450283 -149745149 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 947 302 279 55 24 chr1 47450295 47450460 -149744972 - L1MC3 LINE L1 -13 7772 7603 5 947 2384 208 40 60 chr1 47450571 47451140 -149744292 - RLTR20B3 LTR ERVK -19 558 1 5 947 182 37 0 36 chr1 47451206 47451234 -149744198 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 5 947 662 296 64 51 chr1 47451235 47451722 -149743710 - L1MC3 LINE L1 -401 7384 6892 5 947 1356 91 34 9 chr1 47451723 47452162 -149743270 + (TCTA)n Simple_repeat Simple_repeat 1 450 0 6 947 414 0 0 0 chr1 47452201 47452247 -149743185 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 947 251 269 121 69 chr1 47452250 47452366 -149743066 - L1MC3 LINE L1 -923 6862 6741 5 947 393 161 0 0 chr1 47452501 47452588 -149742844 + (TA)n Simple_repeat Simple_repeat 1 87 0 6 947 375 211 218 17 chr1 47453097 47453271 -149742161 + Lx9 LINE L1 7436 7644 0 6 947 1651 196 99 13 chr1 47453801 47454174 -149741258 + Lx6 LINE L1 6451 6855 -605 6 947 1888 233 123 74 chr1 47454458 47454488 -149740944 + Lx6 LINE L1 6849 6877 -583 6 947 585 0 0 0 chr1 47454488 47454553 -149740879 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 947 1888 233 123 74 chr1 47454553 47454983 -149740449 + Lx6 LINE L1 6878 7321 -139 6 947 572 246 104 0 chr1 47454983 47455117 -149740315 - B1_Mur2 SINE Alu 0 149 2 6 947 1888 233 123 74 chr1 47455117 47455238 -149740194 + Lx6 LINE L1 7322 7460 0 6 947 483 205 0 211 chr1 47455791 47455952 -149739480 + RLTR23 LTR ERV1 13 139 -291 6 947 239 148 185 0 chr1 47456208 47456262 -149739170 - ORR1C1 LTR MaLR -314 64 1 6 947 314 350 40 0 chr1 47456332 47456509 -149738923 - L1MD3 LINE L1 -1201 6584 6401 6 947 263 418 0 0 chr1 47456587 47456697 -149738735 - Tigger5 DNA MER2_type -2167 239 130 6 947 620 243 27 11 chr1 47456807 47456990 -149738442 - L1MD3 LINE L1 -1572 6423 6238 6 947 213 65 0 0 chr1 47458503 47458534 -149736898 + (A)n Simple_repeat Simple_repeat 1 31 0 6 947 1710 172 52 41 chr1 47459203 47459566 -149735866 - ORR1B2 LTR MaLR 0 367 1 6 947 1345 303 117 31 chr1 47459624 47460638 -149734794 - Lx8 LINE L1 -817 6656 5532 6 947 562 249 29 11 chr1 47460653 47460828 -149734604 - Lx8 LINE L1 -902 4978 4801 6 947 242 266 202 0 chr1 47460829 47460953 -149734479 - Lx8 LINE L1 -1298 4582 4434 6 947 1588 238 30 51 chr1 47461059 47461488 -149733944 - MTC LTR MaLR -1 420 1 6 947 276 59 0 56 chr1 47461538 47461592 -149733840 + (TCC)n Simple_repeat Simple_repeat 2 52 0 6 947 489 233 100 27 chr1 47461667 47461817 -149733615 + Lx8 LINE L1 6983 7143 -330 6 947 21 0 0 0 chr1 47462455 47462476 -149732956 + AT_rich Low_complexity Low_complexity 1 21 0 6 947 238 119 48 0 chr1 47463212 47463254 -149732178 - L1_Mur1 LINE L1 -338 5548 5505 6 947 495 112 0 0 chr1 47463789 47463878 -149731554 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 947 25 31 0 0 chr1 47463976 47464008 -149731424 + AT_rich Low_complexity Low_complexity 1 32 0 6 947 6080 121 77 3 chr1 47464630 47465620 -149729812 - Lx3B LINE L1 -1 6972 5910 6 947 529 300 0 26 chr1 47465667 47465821 -149729611 - RSINE1 SINE B4 -13 152 3 6 947 262 330 0 0 chr1 47466057 47466151 -149729281 - L1MEf LINE L1 -4637 1563 1470 6 947 23 92 0 0 chr1 47466437 47466502 -149728930 + AT_rich Low_complexity Low_complexity 1 65 0 6 947 891 230 54 0 chr1 47466604 47466808 -149728624 - B3 SINE B2 0 216 2 6 947 2283 22 4 0 chr1 47467275 47467545 -149727887 - L1Md_F3 LINE L1 -545 6039 5769 6 947 4167 40 6 2 chr1 47467544 47468050 -149727382 + L1Md_F3 LINE L1 6057 6564 -20 6 947 397 259 0 0 chr1 47468424 47468505 -149726927 - B1F SINE Alu -2 147 67 6 947 24 103 0 0 chr1 47469811 47469898 -149725534 + AT_rich Low_complexity Low_complexity 1 87 0 6 947 395 68 17 0 chr1 47470846 47470905 -149724527 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 947 495 0 0 0 chr1 47471389 47471444 -149723988 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 947 22 35 0 0 chr1 47473020 47473049 -149722383 + AT_rich Low_complexity Low_complexity 1 29 0 6 947 558 43 0 0 chr1 47473616 47473685 -149721747 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 947 227 321 27 27 chr1 47473810 47473922 -149721510 + LTR86C LTR ERVL 433 544 -77 6 947 243 0 0 0 chr1 47474277 47474304 -149721128 + (T)n Simple_repeat Simple_repeat 1 27 0 6 947 752 103 0 8 chr1 47474397 47474514 -149720918 + (TCTCCC)n Simple_repeat Simple_repeat 3 118 0 6 947 1154 68 7 0 chr1 47474518 47474665 -149720767 - B1_Mus1 SINE Alu 0 148 1 6 947 558 193 34 14 chr1 47475825 47475972 -149719460 - Lx9 LINE L1 -1 7643 7494 6 947 199 314 123 9 chr1 47476072 47476178 -149719254 - L3 LINE CR1 -2294 2195 2078 6 947 287 274 144 8 chr1 47476372 47476497 -149718935 - MER67C LTR ERV1 -70 641 500 6 947 367 281 158 50 chr1 47476538 47476740 -149718692 + ID_B1 SINE B4 1 224 0 6 947 345 47 0 0 chr1 47477041 47477084 -149718348 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 947 662 276 110 14 chr1 47477109 47477473 -149717959 + L1M2 LINE L1 4269 4667 -1476 6 947 785 209 107 46 chr1 47477481 47477661 -149717771 - ORR1C2 LTR MaLR 0 384 192 6 947 996 92 0 0 chr1 47477661 47477824 -149717608 + (GA)n Simple_repeat Simple_repeat 1 163 0 6 947 785 209 107 46 chr1 47477824 47477839 -149717593 - ORR1C2 LTR MaLR -193 191 177 6 947 263 132 0 36 chr1 47477840 47477866 -149717566 + polypurine Low_complexity Low_complexity 3 28 0 6 947 336 64 0 0 chr1 47477866 47477913 -149717519 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 947 263 132 0 36 chr1 47477913 47477941 -149717491 + polypurine Low_complexity Low_complexity 29 55 0 6 947 393 75 0 0 chr1 47477938 47477991 -149717441 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 947 488 193 41 54 chr1 47477991 47478127 -149717305 - ORR1C2 LTR MaLR -190 194 9 6 947 2528 54 75 54 chr1 47478141 47478529 -149716903 + MTA_Mm LTR MaLR 1 396 0 6 947 3245 75 37 37 chr1 47478560 47479045 -149716387 + L1Md_F2 LINE L1 6098 6582 0 6 947 291 114 0 0 chr1 47479382 47479426 -149716006 + (TATG)n Simple_repeat Simple_repeat 4 47 0 6 947 529 289 9 33 chr1 47479791 47480006 -149715426 + L1M2 LINE L1 4737 4946 -1197 6 947 451 0 34 0 chr1 47480080 47480139 -149715293 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 947 237 65 0 0 chr1 47480139 47480170 -149715262 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 6 947 207 146 0 0 chr1 47480160 47480201 -149715231 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 947 536 303 24 0 chr1 47480201 47480366 -149715066 - B3A SINE B2 -28 170 2 6 947 558 321 58 4 chr1 47480410 47480651 -149714781 - MER67C LTR ERV1 -457 254 1 6 947 444 238 111 72 chr1 47481125 47481306 -149714126 + RMER5 LTR ERV1 33 220 -314 6 947 901 56 8 16 chr1 47481326 47481453 -149713979 - B1_Mm SINE Alu 0 147 22 6 947 496 253 32 26 chr1 47481455 47481609 -149713823 + RMER5 LTR ERV1 224 378 -156 6 947 216 0 0 0 chr1 47481724 47481748 -149713684 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 947 640 208 20 20 chr1 47482676 47482823 -149712609 + RMER5 LTR ERV1 388 534 0 6 947 2584 38 47 3 chr1 47483294 47483635 -149711797 - L1Md_F2 LINE L1 0 6582 6227 6 947 3079 73 0 0 chr1 47483637 47484036 -149711396 - L1_Mm LINE L1 -693 5190 4792 6 947 6445 67 5 0 chr1 47484035 47484877 -149710555 + L1_Mm LINE L1 3906 4751 -1132 6 947 251 341 84 18 chr1 47485569 47485736 -149709696 - L2 LINE L2 -550 2869 2692 6 947 1153 299 23 60 chr1 47486069 47486453 -149708979 - ORR1D2 LTR MaLR 0 370 1 6 947 23 33 0 0 chr1 47486698 47486728 -149708704 + AT_rich Low_complexity Low_complexity 1 30 0 6 947 2341 185 42 13 chr1 47487300 47487755 -149707677 - RLTR19-int LTR ERVK -1736 4401 3934 6 947 275 70 23 0 chr1 47487755 47487798 -149707634 + 5S rRNA rRNA 5 48 -73 6 947 23 54 0 0 chr1 47488359 47488396 -149707036 + AT_rich Low_complexity Low_complexity 1 37 0 6 947 207 0 0 95 chr1 47489377 47489419 -149706013 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 947 898 290 93 28 chr1 47490647 47491002 -149704430 - MTE2b LTR MaLR -1 378 1 6 947 426 347 229 4 chr1 47491364 47491630 -149703802 - LTR16A LTR ERVL -33 418 93 6 947 210 100 50 0 chr1 47492441 47492481 -149702951 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 947 180 224 75 86 chr1 47492927 47493020 -149702412 + L3 LINE CR1 2032 2123 -2366 6 947 266 182 15 0 chr1 47493209 47493275 -149702157 + GA-rich Low_complexity Low_complexity 3 69 0 6 947 647 330 22 15 chr1 47494357 47494631 -149700801 - L1MD2 LINE L1 -44 6315 6040 6 947 448 337 71 41 chr1 47494984 47495278 -149700154 - MER90a LTR ERV1 -203 411 109 6 947 608 307 22 17 chr1 47495412 47495591 -149699841 - B3A SINE B2 -18 180 1 6 947 28 61 0 0 chr1 47495620 47495669 -149699763 + AT_rich Low_complexity Low_complexity 1 49 0 6 947 1162 235 64 24 chr1 47496914 47497210 -149698222 + MTE2b LTR MaLR 72 379 0 6 947 803 272 104 49 chr1 47499079 47499465 -149695967 + MT2A LTR ERVL 127 533 0 6 947 252 143 0 0 chr1 47500705 47500747 -149694685 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 947 24 32 0 0 chr1 47502350 47502381 -149693051 + AT_rich Low_complexity Low_complexity 1 31 0 2 947 393 22 0 0 chr1 47504195 47504241 -149691191 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 947 190 0 67 0 chr1 47504620 47504650 -149690782 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 947 23 0 0 0 chr1 47505000 47505023 -149690409 + AT_rich Low_complexity Low_complexity 1 23 0 5 947 23 33 0 0 chr1 47506630 47506660 -149688772 + AT_rich Low_complexity Low_complexity 1 30 0 6 947 1072 65 0 7 chr1 47507431 47507564 -149687868 + B1_Mus2 SINE Alu 3 135 -12 7 947 279 0 0 0 chr1 47507564 47507595 -149687837 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 8 947 21 57 0 0 chr1 47507632 47507667 -149687765 + AT_rich Low_complexity Low_complexity 1 35 0 9 947 225 325 94 39 chr1 47507808 47507936 -149687496 + MIR SINE MIR 7 141 -121 1 947 1855 69 0 26 chr1 47508777 47509044 -149686388 - MusHAL1 LINE L1 -754 1958 1699 1 947 5391 29 0 0 chr1 47509044 47509674 -149685758 - L1Md_A LINE L1 -1 6581 5952 1 947 3228 19 0 2 chr1 47509674 47510118 -149685314 + L1Md_A LINE L1 5516 5954 -628 1 947 2964 75 31 0 chr1 47510115 47510528 -149684904 - MusHAL1 LINE L1 -998 1714 1289 1 947 6711 123 21 15 chr1 47510526 47512022 -149683410 + Lx2 LINE L1 5132 6643 -354 1 947 1266 158 9 0 chr1 47512022 47512237 -149683195 + Lx2 LINE L1 6775 6991 -6 1 947 414 311 10 48 chr1 47512294 47512500 -149682932 - B3A SINE B2 0 198 1 1 947 438 20 0 0 chr1 47512926 47512977 -149682455 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 947 3249 42 3 0 chr1 47513245 47513629 -149681803 + IAPEY_LTR LTR ERVK 1 385 0 1 947 243 0 0 0 chr1 47514476 47514503 -149680929 + (A)n Simple_repeat Simple_repeat 1 27 0 1 947 288 0 0 0 chr1 47514504 47514536 -149680896 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 947 357 352 252 8 chr1 47514540 47514794 -149680638 - MLT1A0 LTR MaLR -49 316 1 1 947 477 270 11 51 chr1 47514831 47515007 -149680425 + Lx7 LINE L1 5641 5811 -1239 2 947 354 61 0 0 chr1 47515065 47515114 -149680318 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 947 523 297 14 41 chr1 47515459 47515677 -149679755 + B3 SINE B2 2 213 -3 2 947 24 32 0 0 chr1 47515685 47515716 -149679716 + AT_rich Low_complexity Low_complexity 1 31 0 2 947 373 350 56 21 chr1 47515804 47515947 -149679485 - RSINE1 SINE B4 -2 163 16 2 947 5420 190 16 7 chr1 47516795 47518010 -149677422 + Lx4B LINE L1 5456 6688 -370 2 947 28 0 0 0 chr1 47518077 47518105 -149677327 + AT_rich Low_complexity Low_complexity 1 28 0 2 947 25 31 0 0 chr1 47518625 47518657 -149676775 + AT_rich Low_complexity Low_complexity 1 32 0 2 947 503 293 40 17 chr1 47518944 47519121 -149676311 + RMER15 LTR ERVL 383 563 -12 2 947 501 306 121 48 chr1 47519593 47519923 -149675509 + RMER15-int LTR ERVL 427 780 -4219 2 947 1362 283 66 24 chr1 47519970 47520470 -149674962 + RMER15-int LTR ERVL 861 1381 -3618 2 947 1240 309 139 49 chr1 47520508 47521263 -149674169 + Lx8 LINE L1 6249 7071 -402 2 947 202 358 41 8 chr1 47521684 47521805 -149673627 + L2b LINE L2 3049 3173 -202 3 947 318 26 0 0 chr1 47521884 47521923 -149673509 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 947 230 394 98 29 chr1 47522323 47522527 -149672905 - LTR79 LTR ERVL -185 342 125 3 947 22 0 0 0 chr1 47523098 47523120 -149672312 + AT_rich Low_complexity Low_complexity 1 22 0 3 947 183 275 88 0 chr1 47523200 47523280 -149672152 + MIRc SINE MIR 69 155 -113 3 947 204 125 0 0 chr1 47524174 47524206 -149671226 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 3 947 3011 32 0 0 chr1 47524345 47524691 -149670741 + ORR1A0 LTR MaLR 1 346 0 3 947 246 308 118 18 chr1 47525244 47525369 -149670063 + B1F SINE Alu 8 143 -6 3 947 236 178 0 0 chr1 47525369 47525414 -149670018 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 947 955 100 7 7 chr1 47525418 47525569 -149669863 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 3 947 329 268 0 0 chr1 47526064 47526135 -149669297 + ID2 SINE ID 2 72 -11 4 947 1139 168 29 1 chr1 47526252 47526487 -149668945 - ORR1B1 LTR MaLR -8 386 96 4 947 4391 141 81 16 chr1 47526487 47527263 -149668169 - Lx4A LINE L1 -221 6837 6011 4 947 662 125 0 0 chr1 47527263 47527367 -149668065 + Lx4A LINE L1 5917 6020 -1038 4 947 21 36 0 0 chr1 47527488 47527516 -149667916 + AT_rich Low_complexity Low_complexity 1 28 0 4 947 356 296 137 16 chr1 47531210 47531392 -149664040 - RMER15 LTR ERVL -14 561 358 4 947 656 80 0 0 chr1 47531657 47531745 -149663687 - B1_Mus2 SINE Alu 0 147 60 4 947 254 268 120 43 chr1 47531702 47531819 -149663613 - MT2B LTR ERVL -344 257 132 4 947 4973 171 106 14 chr1 47533239 47534245 -149661187 - RLTR25A LTR ERVK 0 1103 5 4 947 3064 62 30 2 chr1 47534530 47534934 -149660498 - L1_Mus2 LINE L1 -1 6565 6151 4 947 1675 188 59 55 chr1 47534999 47535427 -149660005 + RLTR41 LTR ERV1 38 446 0 4 947 25 0 0 0 chr1 47535518 47535543 -149659889 + AT_rich Low_complexity Low_complexity 1 25 0 5 947 463 224 62 37 chr1 47535833 47535995 -149659437 - RLTR23 LTR ERV1 0 430 265 5 947 714 55 0 0 chr1 47537567 47537658 -149657774 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 947 423 152 6 113 chr1 47538138 47538235 -149657197 + ORR1C1 LTR MaLR 27 116 -262 5 947 210 105 0 0 chr1 47538670 47538708 -149656724 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 5 947 284 48 24 0 chr1 47539758 47539800 -149655632 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 947 550 308 43 11 chr1 47539804 47539991 -149655441 - Lx5 LINE L1 -23 7027 6835 5 947 1893 243 5 8 chr1 47540512 47540890 -149654542 - Lx6 LINE L1 -15 7445 7069 5 947 525 216 109 23 chr1 47540897 47541025 -149654407 + Lx6 LINE L1 6942 7080 -380 5 947 905 243 104 9 chr1 47541190 47541410 -149654022 + B4 SINE B4 8 248 -44 5 947 1592 16 16 0 chr1 47543668 47543857 -149651575 + B2_Mm1a SINE B2 2 193 0 5 947 189 0 0 0 chr1 47543857 47543878 -149651554 + (A)n Simple_repeat Simple_repeat 1 21 0 6 947 26 0 0 0 chr1 47544067 47544093 -149651339 + AT_rich Low_complexity Low_complexity 1 26 0 6 947 231 103 0 0 chr1 47544820 47544859 -149650573 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 6 947 1127 68 7 0 chr1 47544866 47545012 -149650420 - B1_Mm SINE Alu 0 147 1 6 947 258 32 0 0 chr1 47545081 47545112 -149650320 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 947 1786 195 75 30 chr1 47545470 47545872 -149649560 + RLTR9B2 LTR ERVK 1 420 0 6 947 244 303 0 38 chr1 47546734 47546813 -149648619 + ID4 SINE ID 4 79 -4 6 947 1502 225 122 97 chr1 47548523 47548877 -149646555 + RLTR20B1 LTR ERVK 1 441 -122 6 947 261 0 0 0 chr1 47548877 47548906 -149646526 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 947 1502 216 121 97 chr1 47548906 47549066 -149646366 + RLTR20B1 LTR ERVK 442 563 0 6 947 670 283 48 145 chr1 47549797 47550260 -149645172 + RLTR23 LTR ERV1 8 425 -5 6 947 1601 179 49 26 chr1 47550266 47550657 -149644775 + RMER17C LTR ERVK 3 402 -8 7 947 615 259 14 0 chr1 47551671 47551818 -149643614 - B1_Mur3 SINE Alu 0 149 1 7 947 243 0 0 0 chr1 47552277 47552304 -149643128 + (T)n Simple_repeat Simple_repeat 1 27 0 7 947 237 294 231 25 chr1 47553327 47553488 -149641944 + L1MA9 LINE L1 5599 5780 -520 7 947 234 80 39 20 chr1 47553488 47553539 -149641893 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 947 251 266 97 23 chr1 47553539 47553670 -149641762 + L1MA9 LINE L1 5781 5947 -365 7 947 444 326 14 7 chr1 47553841 47553980 -149641452 - B1F SINE Alu -8 141 2 7 947 26 101 0 0 chr1 47554096 47554185 -149641247 + AT_rich Low_complexity Low_complexity 1 89 0 7 947 830 173 135 15 chr1 47554267 47554467 -149640965 + RMER1C Other Other 962 1185 -157 7 947 380 247 34 0 chr1 47554467 47554556 -149640876 + MTE2a LTR MaLR 245 336 -43 7 947 7707 82 1 1 chr1 47555314 47556638 -149638794 - L1_Mus2 LINE L1 -2 6564 5240 7 947 5545 151 25 5 chr1 47556636 47558159 -149637273 - L1_Mus2 LINE L1 -3770 2113 559 7 947 315 0 0 0 chr1 47558581 47558616 -149636816 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 947 237 320 19 65 chr1 47558654 47558761 -149636671 + PB1D10 SINE Alu 3 104 -13 8 947 579 29 0 0 chr1 47558762 47558831 -149636601 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 947 228 189 19 0 chr1 47558877 47558930 -149636502 + T-rich Low_complexity Low_complexity 1 54 0 8 947 33 0 0 0 chr1 47558930 47558963 -149636469 + AT_rich Low_complexity Low_complexity 1 33 0 8 947 25943 65 9 1 chr1 47559525 47562951 -149632481 + L1Md_F2 LINE L1 2132 5586 -297 8 947 7777 59 3 0 chr1 47562952 47563929 -149631503 + L1Md_F2 LINE L1 5588 6567 -15 8 947 353 271 222 2 chr1 47564152 47564286 -149631146 + B3A SINE B2 1 149 -46 8 947 821 90 8 0 chr1 47564301 47564434 -149630998 + (CA)n Simple_repeat Simple_repeat 1 134 0 8 947 585 42 0 0 chr1 47564434 47564506 -149630926 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 8 947 684 279 20 40 chr1 47564710 47564887 -149630545 - ORR1E LTR MaLR -186 173 6 8 947 227 278 69 0 chr1 47565645 47565717 -149629715 + L1MCa LINE L1 50 126 -6382 9 947 300 339 124 50 chr1 47567284 47567330 -149628102 + L1MCa LINE L1 976 1027 -5481 9 947 331 0 82 0 chr1 47567330 47567379 -149628053 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 9 947 330 335 130 32 chr1 47567379 47567896 -149627536 + L1MCa LINE L1 1028 1626 -4791 9 947 404 247 48 18 chr1 47567960 47568125 -149627307 + L1MCa LINE L1 1691 1860 -4648 9 947 633 236 36 22 chr1 47569081 47569297 -149626135 - L1MA4 LINE L1 -268 5888 5673 9 947 352 345 51 57 chr1 47569945 47570102 -149625330 - RSINE1 SINE B4 -2 163 8 9 947 21 0 0 0 chr1 47571234 47571255 -149624177 + AT_rich Low_complexity Low_complexity 1 21 0 9 947 249 289 0 35 chr1 47571465 47571551 -149623881 + (TTGTG)n Simple_repeat Simple_repeat 5 87 0 9 947 1546 203 68 9 chr1 47571625 47571948 -149623484 - ORR1C1 LTR MaLR 0 378 37 9 947 2639 239 66 2 chr1 47572085 47572694 -149622738 - ORR1C1-int LTR MaLR -78 1431 784 9 947 4806 130 40 8 chr1 47572717 47573516 -149621916 - Lx3B LINE L1 0 6973 6149 9 947 2226 118 0 30 chr1 47573518 47573884 -149621548 + Lx3B LINE L1 5785 6139 -834 9 947 3193 177 30 16 chr1 47573909 47574542 -149620890 - ORR1C1-int LTR MaLR -867 642 1 9 947 1403 177 98 17 chr1 47574542 47574829 -149620603 - ORR1C1 LTR MaLR 0 378 69 9 118 39021 30 3 7 chr1 47575187 47581358 -149614074 - L1Md_T LINE L1 0 6582 440 9 948 272 338 44 44 chr1 47582302 47582460 -149612972 - Charlie1a DNA MER1_type -659 796 639 9 948 21 0 0 0 chr1 47582522 47582543 -149612889 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 423 0 0 0 chr1 47583293 47583340 -149612092 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 948 558 43 0 0 chr1 47583837 47583906 -149611526 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 948 32 0 0 0 chr1 47584268 47584300 -149611132 + AT_rich Low_complexity Low_complexity 1 32 0 1 948 408 121 0 0 chr1 47584585 47584643 -149610789 + B1_Mus2 SINE Alu 1 58 -89 1 948 348 206 0 14 chr1 47584643 47584654 -149610778 + ID_B1 SINE B4 82 149 -75 1 948 2330 197 48 34 chr1 47585686 47586191 -149609241 + RMER20A LTR ERVK 5 516 0 1 948 1070 104 98 0 chr1 47586668 47586832 -149608600 - B2_Mm2 SINE B2 -14 181 2 1 948 25 75 0 0 chr1 47587013 47587066 -149608366 + AT_rich Low_complexity Low_complexity 1 53 0 1 948 22 0 0 0 chr1 47587167 47587189 -149608243 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 296 318 80 68 chr1 47587315 47587477 -149607955 - B4A SINE B4 -41 251 88 1 948 341 338 38 47 chr1 47587529 47587765 -149607667 - L1M5 LINE L1 -875 5271 5038 1 948 1433 262 87 0 chr1 47587765 47588135 -149607297 - Lx6 LINE L1 -9 7451 7050 1 948 345 131 0 0 chr1 47588348 47588409 -149607023 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 948 1510 194 21 3 chr1 47588655 47588944 -149606488 - ORR1B1 LTR MaLR -29 365 72 1 948 230 216 58 58 chr1 47590697 47590800 -149604632 + L1MA8 LINE L1 5839 5941 -350 1 948 245 369 49 0 chr1 47591211 47591333 -149604099 + RMER5 LTR ERV1 45 172 -362 1 948 999 189 60 51 chr1 47591445 47591679 -149603753 + Lx4A LINE L1 6822 7057 -1 1 948 260 294 102 18 chr1 47591722 47591888 -149603544 + L1MC4 LINE L1 7703 7882 -160 1 948 25 0 0 0 chr1 47593045 47593070 -149602362 + AT_rich Low_complexity Low_complexity 1 25 0 1 948 313 374 25 25 chr1 47593113 47593231 -149602201 - B1F SINE Alu -27 122 5 1 948 657 0 0 0 chr1 47593328 47593401 -149602031 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 948 432 0 0 0 chr1 47593762 47593810 -149601622 + (TAA)n Simple_repeat Simple_repeat 1 48 0 1 948 342 0 0 0 chr1 47594090 47594128 -149601304 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 948 310 293 167 70 chr1 47594381 47594865 -149600567 - MT2A LTR ERVL 0 533 3 1 948 5260 29 0 16 chr1 47597456 47598090 -149597342 - L1Md_T LINE L1 -2 6580 5957 1 948 1925 227 45 102 chr1 47598356 47598870 -149596562 - RMER19C LTR ERVK 0 611 132 1 948 222 37 0 0 chr1 47598870 47598897 -149596535 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 948 1925 227 45 102 chr1 47598897 47599030 -149596402 - RMER19C LTR ERVK -480 131 1 1 948 234 207 0 17 chr1 47599033 47599092 -149596340 + A-rich Low_complexity Low_complexity 4 61 0 1 948 216 135 0 0 chr1 47599356 47599393 -149596039 + (CATA)n Simple_repeat Simple_repeat 4 40 0 1 948 510 17 0 0 chr1 47599571 47599630 -149595802 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 948 485 282 171 37 chr1 47599951 47600249 -149595183 - Tigger10 DNA Tigger -1010 833 496 1 948 602 319 34 51 chr1 47601534 47601682 -149593750 - RMER15-int LTR ERVL -515 4484 4348 1 948 5261 170 30 4 chr1 47601682 47602626 -149592806 - Lx4A LINE L1 -11 7047 6080 1 948 602 319 34 51 chr1 47602626 47602771 -149592661 - RMER15-int LTR ERVL -652 4347 4196 1 948 22 35 0 0 chr1 47603796 47603825 -149591607 + AT_rich Low_complexity Low_complexity 1 29 0 1 948 34 65 0 0 chr1 47604090 47604152 -149591280 + AT_rich Low_complexity Low_complexity 1 62 0 1 948 349 312 45 0 chr1 47605527 47605639 -149589793 - MLT1B LTR MaLR -2 388 272 1 948 299 315 114 5 chr1 47605644 47605850 -149589582 + B4A SINE B4 39 290 -2 1 948 383 225 5 9 chr1 47605852 47606082 -149589350 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 948 22 35 0 0 chr1 47606575 47606604 -149588828 + AT_rich Low_complexity Low_complexity 1 29 0 1 948 229 189 57 0 chr1 47606604 47606657 -149588775 - L1MA8 LINE L1 -171 6120 6065 1 948 7359 74 7 3 chr1 47606662 47607638 -149587794 + L1_Mus2 LINE L1 5587 6566 0 1 948 220 234 31 21 chr1 47608077 47608173 -149587259 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 948 542 286 77 56 chr1 47608466 47608751 -149586681 - B4A SINE B4 0 292 2 1 948 21 36 0 0 chr1 47609425 47609453 -149585979 + AT_rich Low_complexity Low_complexity 1 28 0 1 948 5091 151 56 20 chr1 47610194 47611154 -149584278 - Lx2A1 LINE L1 0 7008 6014 1 948 446 81 0 0 chr1 47611746 47611888 -149583544 - L1Md_F2 LINE L1 0 6582 6509 1 948 17830 86 2 1 chr1 47611889 47615167 -149580265 - L1Md_F LINE L1 -2190 3693 478 1 948 5768 135 69 0 chr1 47615210 47616180 -149579252 + Lx3C LINE L1 5928 6964 -12 1 948 435 52 0 0 chr1 47616180 47616238 -149579194 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1 948 27 29 0 0 chr1 47616431 47616465 -149578967 + AT_rich Low_complexity Low_complexity 1 34 0 1 948 180 229 239 62 chr1 47618126 47618256 -149577176 - L2 LINE L2 -939 2480 2328 1 948 409 310 36 27 chr1 47621107 47621326 -149574106 + IAPEz-int LTR ERVK 2966 3186 -3295 1 948 3029 64 8 8 chr1 47621596 47621992 -149573440 - MTA_Mm LTR MaLR 0 396 1 1 948 7634 67 11 74 chr1 47621994 47623163 -149572269 - MTA_Mm-int LTR MaLR -2 1096 1 1 948 3044 66 5 8 chr1 47623163 47623560 -149571872 - MTA_Mm LTR MaLR 0 396 1 1 948 9730 220 26 22 chr1 47623684 47626604 -149568828 - Lx6 LINE L1 -886 6574 3655 1 948 1131 209 14 14 chr1 47626595 47626891 -149568541 - Lx6 LINE L1 -2469 3411 3116 1 948 2677 196 41 71 chr1 47626891 47627292 -149568140 - Lx6 LINE L1 -3071 2809 2412 1 948 1089 108 0 0 chr1 47627292 47627440 -149567992 + B1_Mus1 SINE Alu 1 148 0 1 948 2677 196 41 71 chr1 47627440 47627814 -149567618 - Lx6 LINE L1 -3469 2411 2057 1 948 341 131 0 16 chr1 47627814 47627876 -149567556 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 948 553 259 28 11 chr1 47627906 47628082 -149567350 - Lx6 LINE L1 -3811 2069 1891 1 948 249 167 0 0 chr1 47628081 47628123 -149567309 - L1_Mur3 LINE L1 -711 5166 5125 1 948 203 165 11 34 chr1 47628124 47628212 -149567220 + (TTTG)n Simple_repeat Simple_repeat 2 87 0 1 948 274 206 0 0 chr1 47628215 47628278 -149567154 - Lx5 LINE L1 -766 5114 5052 1 948 2956 232 73 16 chr1 47628277 47629737 -149565695 + Lx5 LINE L1 5166 6902 -558 1 948 567 280 36 10 chr1 47629738 47629933 -149565499 - Lx6 LINE L1 -6694 1034 835 1 948 1091 301 86 21 chr1 47629928 47630407 -149565025 - Lx6 LINE L1 -7168 560 51 1 948 1340 226 63 16 chr1 47630409 47630724 -149564708 - ORR1D1 LTR MaLR -40 334 5 1 948 258 240 93 0 chr1 47630904 47631033 -149564399 - Lx9 LINE L1 -5 7639 7499 1 948 300 310 114 48 chr1 47631369 47631474 -149563958 + RSINE1 SINE B4 54 165 0 1 948 211 271 0 17 chr1 47631519 47631579 -149563853 + CT-rich Low_complexity Low_complexity 1 59 0 1 948 498 61 0 0 chr1 47631739 47631805 -149563627 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 1 948 505 127 10 10 chr1 47631871 47631974 -149563458 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 1 948 483 323 42 5 chr1 47632177 47632367 -149563065 + B3A SINE B2 1 197 -1 1 948 1565 212 92 50 chr1 47632444 47632529 -149562903 - RLTR20C LTR ERVK -6 528 446 1 948 459 0 0 0 chr1 47632529 47632580 -149562852 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 948 1565 212 92 50 chr1 47632580 47632747 -149562685 - RLTR20C LTR ERVK -89 445 266 1 948 2691 64 29 13 chr1 47632747 47633128 -149562304 - L1_Mus3 LINE L1 -3 6635 6249 1 948 1565 218 106 52 chr1 47633128 47633399 -149562033 - RLTR20C LTR ERVK -271 306 6 1 948 6626 136 56 2 chr1 47633403 47634175 -149561257 - MYSERV16_I-int LTR ERVK 0 2842 1527 1 948 286 28 111 0 chr1 47634175 47634247 -149561185 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 948 6626 171 61 48 chr1 47634247 47635171 -149560261 - MYSERV16_I-int LTR ERVK -735 2107 431 1 948 546 191 0 19 chr1 47635207 47635314 -149560118 - Lx LINE L1 -445 6209 6105 1 948 3935 133 2 6 chr1 47635312 47636191 -149559241 + Lx LINE L1 5195 6066 -588 1 948 464 206 51 93 chr1 47636687 47636805 -149558627 - RLTR20C LTR ERVK 0 534 422 1 948 931 207 216 26 chr1 47636944 47637212 -149558220 - RMER19C LTR ERVK -292 319 1 1 948 416 290 80 0 chr1 47637495 47637595 -149557837 + PB1D10 SINE Alu 6 113 -4 1 948 17762 161 17 111 chr1 47637952 47641888 -149553544 + Lx3C LINE L1 507 3825 -2058 1 948 3842 54 0 2 chr1 47641888 47642372 -149553060 + L1Md_F2 LINE L1 6100 6582 0 1 948 17762 176 20 130 chr1 47642372 47644211 -149551221 + Lx3C LINE L1 3826 5725 -158 1 948 1412 63 32 55 chr1 47644211 47644429 -149551003 + L1Md_F3 LINE L1 6371 6583 -1 1 948 17762 126 9 58 chr1 47644429 47644536 -149550896 + Lx3C LINE L1 5726 5797 -1212 1 948 35414 35 0 0 chr1 47644535 47649769 -149545663 + L1Md_T LINE L1 259 5589 -297 1 948 8877 10 0 0 chr1 47649769 47650765 -149544667 + L1Md_T LINE L1 5590 6585 0 1 948 1200 86 6 0 chr1 47650775 47650949 -149544483 + Lx3C LINE L1 5783 5957 -1019 1 948 240 35 0 0 chr1 47651068 47651097 -149544335 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 1 948 1062 112 0 17 chr1 47651099 47651280 -149544152 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 1 948 243 322 8 0 chr1 47652275 47652396 -149543036 + L1M2 LINE L1 5667 5788 -524 1 948 454 312 56 13 chr1 47652413 47652647 -149542785 + L1MB1 LINE L1 5822 6065 -103 1 948 426 295 69 15 chr1 47652851 47652982 -149542450 + RSINE1 SINE B4 9 146 -19 1 948 614 58 11 0 chr1 47654961 47655048 -149540384 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 948 266 257 145 0 chr1 47655537 47655684 -149539748 - Lx9 LINE L1 -1737 5907 5708 1 948 510 17 0 0 chr1 47655782 47655841 -149539591 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 948 498 271 93 19 chr1 47655841 47656055 -149539377 - L1M2 LINE L1 -530 5782 5553 1 948 763 282 42 42 chr1 47656145 47656618 -149538814 + L1_Mur1 LINE L1 5058 5557 -740 1 948 497 301 78 7 chr1 47656662 47656816 -149538616 + B4A SINE B4 72 236 -56 1 948 2820 288 35 57 chr1 47656817 47657754 -149537678 + Lx5 LINE L1 6134 7050 0 1 948 242 95 0 23 chr1 47657787 47657830 -149537602 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 1 948 2466 178 9 61 chr1 47657977 47658503 -149536929 + RLTR28 LTR ERVL 1 499 -25 1 948 2545 246 98 41 chr1 47658669 47659659 -149535773 + RMER1B Other Other 14 1055 -11 1 948 23 33 0 0 chr1 47661475 47661505 -149533927 + AT_rich Low_complexity Low_complexity 1 30 0 1 948 570 321 37 48 chr1 47665019 47665313 -149530119 - B4A SINE B4 0 292 2 1 948 223 205 0 0 chr1 47665525 47665564 -149529868 + PB1 SINE Alu 22 60 -67 1 948 462 274 170 52 chr1 47665631 47665901 -149529531 + RMER5 LTR ERV1 42 343 -191 1 948 392 259 194 33 chr1 47666121 47666301 -149529131 + RMER5 LTR ERV1 322 530 -4 1 948 232 318 15 0 chr1 47667762 47667828 -149527604 + B3 SINE B2 3 69 -147 1 948 306 336 40 14 chr1 47668116 47668264 -149527168 + RMER15 LTR ERVL 422 573 -2 1 948 266 279 22 55 chr1 47670256 47670347 -149525085 + RMER21B LTR ERV1 93 180 -662 2 948 245 39 38 38 chr1 47671941 47671994 -149523438 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 948 1568 68 0 5 chr1 47672205 47672456 -149522976 - L1Md_T LINE L1 0 6582 6375 2 948 6890 21 0 0 chr1 47672456 47673436 -149521996 + L1Md_T LINE L1 5407 6386 -196 2 948 21 0 0 0 chr1 47674604 47674625 -149520807 + AT_rich Low_complexity Low_complexity 1 21 0 2 948 1010 330 14 0 chr1 47674834 47675119 -149520313 + MTE2b LTR MaLR 1 289 -90 2 948 662 231 15 7 chr1 47675324 47675459 -149519973 + B1_Mur2 SINE Alu 12 147 -2 2 948 244 250 42 67 chr1 47676657 47676777 -149518655 - Lx7 LINE L1 -2 7694 7578 2 948 330 98 0 0 chr1 47676777 47676828 -149518604 + (TCTCCC)n Simple_repeat Simple_repeat 4 54 0 2 948 3755 256 45 8 chr1 47676856 47677793 -149517639 - Lx7 LINE L1 -333 7363 6393 2 948 378 0 0 0 chr1 47677857 47677899 -149517533 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 948 496 289 19 6 chr1 47679155 47679315 -149516117 + RSINE1 SINE B4 4 165 0 2 948 285 318 0 0 chr1 47679319 47679407 -149516025 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 948 21401 85 5 1 chr1 47680722 47684434 -149510998 - L1Md_F2 LINE L1 0 6582 2858 2 948 529 278 34 56 chr1 47684530 47684709 -149510723 - RLTR18 LTR ERVK -381 235 61 2 948 1639 98 4 34 chr1 47684764 47685027 -149510405 + Lx LINE L1 6397 6651 -3 2 948 327 197 16 0 chr1 47685027 47685088 -149510344 - RLTR18 LTR ERVK -442 70 9 2 948 379 328 30 23 chr1 47685091 47685222 -149510210 + RSINE1 SINE B4 34 165 0 2 948 645 246 20 45 chr1 47685586 47685763 -149509669 - B3 SINE B2 0 193 2 2 948 2206 217 17 21 chr1 47685799 47686604 -149508828 + L1Md_F LINE L1 2 696 -5823 2 948 36445 55 1 24 chr1 47686618 47692302 -149503130 + L1Md_T LINE L1 99 5586 -297 2 948 7960 58 0 0 chr1 47692302 47693298 -149502134 + L1Md_T LINE L1 5587 6582 0 2 948 2897 38 0 0 chr1 47693301 47693645 -149501787 + L1Md_F2 LINE L1 5243 5586 -297 2 948 8380 28 4 7 chr1 47693645 47694644 -149500788 + L1Md_F2 LINE L1 5587 6582 0 2 948 638 282 72 0 chr1 47694682 47694877 -149500555 + MT2A LTR ERVL 1 209 -324 2 948 1835 172 40 0 chr1 47694898 47695276 -149500156 - Lx9 LINE L1 -8 7636 7244 2 948 468 0 0 0 chr1 47695375 47695427 -149500005 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 2 948 2455 121 40 8 chr1 47695429 47695829 -149499603 - Lx3A LINE L1 -16 6965 6553 2 948 2740 129 17 7 chr1 47695829 47695922 -149499510 - Lx2 LINE L1 -207 6790 6691 2 948 408 20 0 0 chr1 47695922 47695971 -149499461 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 948 2740 129 17 7 chr1 47695971 47696290 -149499142 - Lx2 LINE L1 -307 6690 6375 2 948 1038 276 11 16 chr1 47696306 47696635 -149498797 - L1VL4 LINE L1 -3049 511 193 2 948 653 257 99 0 chr1 47696677 47696829 -149498603 + Lx9 LINE L1 6717 6883 -761 2 948 233 28 0 0 chr1 47696893 47696929 -149498503 + L1_Mus2 LINE L1 6531 6566 0 2 948 944 246 10 10 chr1 47696943 47697148 -149498284 + MT2A LTR ERVL 260 464 -69 2 948 204 97 0 0 chr1 47697148 47697179 -149498253 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 948 29 60 0 0 chr1 47697215 47697265 -149498167 + AT_rich Low_complexity Low_complexity 1 50 0 2 948 2110 85 3 0 chr1 47697360 47697642 -149497790 + L1_Mus1 LINE L1 6285 6567 0 2 948 411 288 95 23 chr1 47697927 47698306 -149497126 - L1M2 LINE L1 -830 5461 5052 2 948 486 0 0 0 chr1 47700463 47700517 -149494915 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 948 623 83 0 0 chr1 47700656 47700752 -149494680 - L1_Mus2 LINE L1 -2 6564 6469 2 948 369 62 0 0 chr1 47702514 47702562 -149492870 + (A)n Simple_repeat Simple_repeat 1 48 0 2 948 7944 50 1 7 chr1 47704237 47705426 -149490006 - L1Md_F2 LINE L1 -1 6581 5397 2 948 645 37 28 9 chr1 47705690 47705799 -149489633 + L1Md_F3 LINE L1 6473 6583 -1 2 948 29328 159 25 48 chr1 47706922 47708657 -149486775 + L1_Mus2 LINE L1 300 2070 -3813 2 948 375 23 0 0 chr1 47708657 47708701 -149486731 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 948 29328 120 12 4 chr1 47708701 47709609 -149485823 + L1_Mus2 LINE L1 2071 3001 -2882 2 948 243 0 0 0 chr1 47709609 47709636 -149485796 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 118 29328 112 15 7 chr1 47709636 47713195 -149482237 + L1_Mus2 LINE L1 3002 6565 -1 2 949 303 252 52 22 chr1 47713325 47713459 -149481973 - L1M4 LINE L1 -1625 4521 4384 2 949 5639 55 0 3 chr1 47713514 47714224 -149481208 - L1_Mm LINE L1 -190 5693 4986 2 949 867 75 15 0 chr1 47714224 47714357 -149481075 + L1Md_F3 LINE L1 6450 6584 0 2 949 600 245 13 0 chr1 47716638 47716793 -149478639 - Lx9 LINE L1 -171 7473 7317 2 949 551 282 37 43 chr1 47716852 47717015 -149478417 - Lx9 LINE L1 -333 7311 7150 2 949 14674 120 37 11 chr1 47717051 47719240 -149476192 - Lx3A LINE L1 -7 6974 4738 2 949 212 0 36 0 chr1 47719240 47719268 -149476164 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 949 14674 110 25 7 chr1 47719268 47720438 -149474994 - Lx3A LINE L1 -1149 4737 3534 2 949 908 245 48 30 chr1 47720428 47720723 -149474709 - Lx9 LINE L1 -517 7127 6828 2 949 1700 293 41 4 chr1 47720807 47721297 -149474135 + Lx9 LINE L1 6322 6829 -815 2 949 311 296 92 0 chr1 47721300 47721398 -149474034 + MER44C DNA MER2_type 1 107 -626 2 949 275 250 155 99 chr1 47721398 47721540 -149473892 + B1_Mur4 SINE Alu 1 150 0 2 949 185 0 0 39 chr1 47721548 47721574 -149473858 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 2 949 245 356 58 0 chr1 47721590 47721677 -149473755 + MER44C DNA MER2_type 112 203 -530 2 949 605 204 0 7 chr1 47721691 47721829 -149473603 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 949 735 283 153 15 chr1 47721848 47722141 -149473291 + MER44C DNA MER2_type 235 565 -168 2 949 450 0 0 0 chr1 47722141 47722191 -149473241 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 949 735 283 153 15 chr1 47722191 47722224 -149473208 + MER44C DNA MER2_type 566 605 -128 2 949 660 293 45 5 chr1 47722953 47723152 -149472280 - B3 SINE B2 -4 212 6 2 949 23 33 0 0 chr1 47723467 47723497 -149471935 + AT_rich Low_complexity Low_complexity 1 30 0 2 949 23 86 0 0 chr1 47723559 47723617 -149471815 + AT_rich Low_complexity Low_complexity 1 58 0 2 949 689 314 10 0 chr1 47723645 47723849 -149471583 - B3 SINE B2 -9 207 2 2 949 23 0 0 0 chr1 47724593 47724616 -149470816 + AT_rich Low_complexity Low_complexity 1 23 0 2 949 762 335 25 25 chr1 47724807 47725092 -149470340 - B4A SINE B4 -2 290 6 2 949 272 202 28 19 chr1 47725822 47725928 -149469504 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2 949 1027 307 53 25 chr1 47725977 47726261 -149469171 + B4A SINE B4 1 292 0 2 949 1855 191 12 39 chr1 47726369 47726784 -149468648 - Lx5 LINE L1 -1060 5990 5587 2 949 1045 269 130 19 chr1 47726775 47727143 -149468289 + Lx5 LINE L1 5980 6388 -662 2 949 232 156 0 0 chr1 47727160 47727230 -149468202 - L1_Mus3 LINE L1 0 6638 6579 2 949 3518 60 2 2 chr1 47727379 47727828 -149467604 + L1Md_F3 LINE L1 6135 6583 -1 2 949 2123 241 36 2 chr1 47727873 47728347 -149467085 + Lx5 LINE L1 6358 6847 -203 2 949 200 262 24 12 chr1 47728401 47728486 -149466946 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 949 867 93 14 7 chr1 47728837 47728978 -149466454 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 2 949 585 0 0 0 chr1 47728996 47729061 -149466371 + (GGGAA)n Simple_repeat Simple_repeat 1 65 0 2 949 25 0 0 0 chr1 47729367 47729392 -149466040 + AT_rich Low_complexity Low_complexity 1 25 0 2 949 24 32 0 0 chr1 47729419 47729450 -149465982 + AT_rich Low_complexity Low_complexity 1 31 0 2 949 29 0 0 0 chr1 47729508 47729537 -149465895 + AT_rich Low_complexity Low_complexity 1 29 0 2 949 1046 115 0 6 chr1 47729552 47729718 -149465714 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 2 949 22 0 0 0 chr1 47730389 47730411 -149465021 + AT_rich Low_complexity Low_complexity 1 22 0 2 949 392 220 33 0 chr1 47731094 47731167 -149464265 + ORR1A2 LTR MaLR 1 76 -253 2 949 758 142 0 0 chr1 47731167 47731280 -149464152 + RLTR20D LTR ERVK 1 113 -455 2 949 1832 181 108 13 chr1 47731269 47731667 -149463765 - RLTR20D LTR ERVK -132 436 1 2 949 1934 129 81 12 chr1 47731669 47732078 -149463354 - MYSERV16_I-int LTR ERVK -2 2324 1888 2 949 39748 18 4 6 chr1 47732126 47738268 -149457164 - L1Md_A LINE L1 -2 6580 468 2 949 4286 147 56 2 chr1 47738269 47739061 -149456371 - MYSERV16_I-int LTR ERVK -426 1900 1067 2 949 2562 187 93 46 chr1 47739042 47739697 -149455735 - MYSERV16_I-int LTR ERVK -1364 962 277 2 949 506 267 27 73 chr1 47739705 47739964 -149455468 - RMER3D-int LTR ERVK -1463 1379 1133 2 949 7049 138 13 2 chr1 47740226 47741755 -149453677 - Lx LINE L1 -6 6648 5101 2 949 403 48 32 0 chr1 47742013 47742075 -149453357 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 949 500 245 0 0 chr1 47742075 47742164 -149453268 + RLTR20D LTR ERVK 472 560 -8 2 949 1475 159 16 0 chr1 47742170 47742422 -149453010 + ORR1A2 LTR MaLR 72 327 0 2 949 30901 41 0 1 chr1 47742453 47746275 -149449157 + L1Md_T LINE L1 1766 5586 -297 2 949 8425 33 0 0 chr1 47746276 47747271 -149448161 + L1Md_T LINE L1 5588 6582 0 2 949 301 337 68 57 chr1 47748011 47748203 -149447229 - B3A SINE B2 -2 196 3 2 949 522 0 0 0 chr1 47748454 47748512 -149446920 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 949 315 0 0 0 chr1 47748512 47748546 -149446886 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 949 871 329 100 43 chr1 47749872 47750124 -149445308 - Lx8 LINE L1 -179 7294 7042 2 949 982 117 0 0 chr1 47750124 47750269 -149445163 - B1_Mus2 SINE Alu -1 146 2 2 949 871 329 100 43 chr1 47750269 47750293 -149445139 - Lx8 LINE L1 -432 7041 7025 2 949 5191 98 7 1 chr1 47750293 47751027 -149444405 - L1_Mus3 LINE L1 -6 6632 5895 2 949 871 329 100 43 chr1 47751027 47751260 -149444172 - Lx8 LINE L1 -449 7024 6755 2 949 338 345 18 0 chr1 47751420 47751530 -149443902 + Lx8 LINE L1 6195 6306 -1167 2 949 3921 119 16 2 chr1 47752252 47752817 -149442615 + Lx2A LINE L1 6430 7002 -6 2 949 1503 246 59 11 chr1 47752980 47753436 -149441996 + Lx9 LINE L1 6925 7402 -242 2 949 11217 175 81 19 chr1 47753435 47756467 -149438965 - L1_Mus4 LINE L1 -482 6154 2941 2 949 745 204 0 12 chr1 47756461 47756625 -149438807 - L1_Mus4 LINE L1 -3231 2649 2488 2 949 26 30 0 0 chr1 47756658 47756691 -149438741 + AT_rich Low_complexity Low_complexity 1 33 0 2 949 677 259 128 36 chr1 47756740 47756936 -149438496 + B3 SINE B2 3 216 0 2 949 900 244 58 37 chr1 47757108 47757444 -149437988 + ORR1D1 LTR MaLR 9 384 0 2 949 236 365 88 88 chr1 47757463 47757622 -149437810 - MER77 LTR ERVL -256 351 193 2 949 546 339 40 76 chr1 47757502 47757805 -149437627 - MER21B LTR ERV1 -563 300 9 2 949 477 0 0 0 chr1 47760234 47760287 -149435145 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 949 202 128 26 0 chr1 47760668 47760707 -149434725 + T-rich Low_complexity Low_complexity 1 40 0 2 949 1128 62 7 0 chr1 47760722 47760867 -149434565 - B1_Mus1 SINE Alu 0 148 3 2 949 23 97 0 0 chr1 47761813 47761885 -149433547 + AT_rich Low_complexity Low_complexity 1 72 0 2 949 28 48 0 0 chr1 47761948 47761990 -149433442 + AT_rich Low_complexity Low_complexity 1 42 0 2 949 37 52 0 0 chr1 47762447 47762505 -149432927 + AT_rich Low_complexity Low_complexity 1 58 0 3 949 602 353 67 25 chr1 47762918 47763232 -149432200 + MLT1A0 LTR MaLR 1 327 -38 3 949 243 122 0 0 chr1 47763454 47763503 -149431929 + (A)n Simple_repeat Simple_repeat 1 49 0 3 949 243 292 96 17 chr1 47764019 47764134 -149431298 + B1F SINE Alu 18 141 -8 3 949 423 317 43 58 chr1 47764530 47764808 -149430624 + Lx9 LINE L1 7099 7372 -272 3 949 432 0 0 0 chr1 47764865 47764913 -149430519 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 949 2648 61 6 11 chr1 47765022 47765370 -149430062 - ORR1A0 LTR MaLR 0 346 1 3 949 4214 245 44 11 chr1 47765384 47766484 -149428948 - Lx9 LINE L1 0 7644 6509 3 949 26 0 0 0 chr1 47766677 47766703 -149428729 + AT_rich Low_complexity Low_complexity 1 26 0 3 949 736 292 19 5 chr1 47766800 47767013 -149428419 - B3 SINE B2 0 216 1 3 949 5959 241 92 25 chr1 47767586 47769255 -149426177 - Lx7 LINE L1 0 7696 5916 3 949 6635 208 53 19 chr1 47769275 47771013 -149424419 - L1_Mur3 LINE L1 -656 5224 3428 3 949 800 243 40 18 chr1 47770996 47771222 -149424210 - L1_Mur3 LINE L1 -6905 823 593 3 949 1096 300 165 5 chr1 47771241 47771648 -149423784 - Lx7 LINE L1 -458 7238 6767 3 949 37766 50 0 3 chr1 47771681 47778353 -149417079 - L1Md_T LINE L1 0 6585 1 3 949 1484 334 38 18 chr1 47778356 47778914 -149416518 - Lx7 LINE L1 -921 6775 6207 3 949 256 351 94 45 chr1 47779409 47779812 -149415620 - L1MCa LINE L1 -5973 535 113 3 949 3956 125 37 101 chr1 47781940 47782804 -149412628 + RMER17D2 LTR ERVK 1 809 0 3 949 21 0 0 0 chr1 47782817 47782838 -149412594 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 2954 86 10 0 chr1 47782865 47783261 -149412171 - MTB LTR MaLR 0 400 1 3 949 382 181 9 9 chr1 47783501 47783607 -149411825 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 949 2445 61 0 3 chr1 47785199 47785511 -149409921 + L1_Mus1 LINE L1 6256 6566 -1 3 949 219 69 0 0 chr1 47785683 47785712 -149409720 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 949 997 106 50 0 chr1 47785715 47785856 -149409576 - B1_Mus1 SINE Alu 0 148 1 3 949 647 259 12 29 chr1 47786341 47786447 -149408985 - RLTR20D LTR ERVK 0 568 465 3 949 486 33 0 0 chr1 47786447 47786507 -149408925 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 949 647 259 12 29 chr1 47786507 47786571 -149408861 - RLTR20D LTR ERVK -104 464 401 3 949 437 264 23 69 chr1 47786609 47786770 -149408662 - RLTR20D LTR ERVK -388 180 1 3 949 414 239 0 32 chr1 47786977 47787072 -149408360 + PB1D10 SINE Alu 25 116 -1 3 949 1487 257 54 10 chr1 47787217 47787603 -149407829 - MTD LTR MaLR -16 403 1 3 949 877 317 146 26 chr1 47787982 47789231 -149406201 + L1MC3 LINE L1 5449 6846 -939 3 949 1119 64 7 0 chr1 47789287 47789427 -149406005 - B1_Mm SINE Alu -6 141 1 3 949 4174 75 29 2 chr1 47789455 47790042 -149405390 - Lx2A1 LINE L1 -1087 5921 5319 3 949 1202 104 15 20 chr1 47790046 47790243 -149405189 + L1Md_F2 LINE L1 6387 6582 0 3 949 961 279 113 36 chr1 47792974 47793390 -149402042 + RMER5 LTR ERV1 20 467 -67 3 949 191 200 25 0 chr1 47793947 47793987 -149401445 - MIR3 SINE MIR -17 191 151 3 949 282 240 170 26 chr1 47794332 47794449 -149400983 - Lx6 LINE L1 -6 7690 7571 3 949 8326 121 10 14 chr1 47794446 47795485 -149399947 + Lx2A LINE L1 5733 6769 -239 3 949 8144 21 0 4 chr1 47795485 47796418 -149399014 + RLTR13B3 LTR ERVK 1 929 0 3 949 8326 121 10 14 chr1 47796418 47796658 -149398774 + Lx2A LINE L1 6770 7007 -1 3 949 580 222 67 26 chr1 47796657 47796678 -149398754 - Lx6 LINE L1 -122 7574 7554 3 949 200 35 35 0 chr1 47796678 47796707 -149398725 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 949 4691 242 49 46 chr1 47796707 47797095 -149398337 - Lx6 LINE L1 -143 7553 6902 3 949 2302 103 0 0 chr1 47797095 47797414 -149398018 + L1_Mus2 LINE L1 6248 6566 0 3 949 4691 258 34 62 chr1 47797414 47797904 -149397528 - Lx6 LINE L1 -559 6901 6463 3 949 2271 230 52 35 chr1 47797904 47798498 -149396934 + RMER19C LTR ERVK 4 607 -4 3 949 4691 258 34 62 chr1 47798498 47798979 -149396453 - Lx6 LINE L1 -998 6462 5974 3 949 23 0 0 0 chr1 47799383 47799406 -149396026 + AT_rich Low_complexity Low_complexity 1 23 0 3 949 1567 218 123 5 chr1 47799406 47799788 -149395644 - Lx3C LINE L1 -5 6971 6545 3 949 4585 172 25 76 chr1 47799866 47800192 -149395240 - RMER13B LTR ERVK 0 908 580 3 949 2516 146 77 72 chr1 47800192 47800722 -149394710 + RMER16 LTR ERVK 1 533 0 3 949 4585 172 25 76 chr1 47800722 47801352 -149394080 - RMER13B LTR ERVK -329 579 1 3 949 370 327 118 28 chr1 47801380 47801635 -149393797 - Lx8 LINE L1 -2 7471 7194 3 949 584 300 55 0 chr1 47802551 47802751 -149392681 - B3 SINE B2 -5 211 1 3 949 2694 173 4 2 chr1 47802923 47803421 -149392011 - L1_Mur2 LINE L1 -616 5261 4763 3 949 6999 130 15 6 chr1 47803429 47804814 -149390618 + Lx LINE L1 5243 6649 -5 3 949 2127 130 29 6 chr1 47804814 47805162 -149390270 - Lx3_Mus LINE L1 -740 6269 5914 3 949 743 180 120 4 chr1 47805165 47805404 -149390028 - Lx2B LINE L1 -893 6088 5799 3 949 4908 81 40 9 chr1 47805404 47806009 -149389423 + Lx3_Mus LINE L1 6291 6913 -96 3 949 4261 20 12 0 chr1 47806009 47806496 -149388936 - MT2_Mm LTR ERVL 0 493 1 3 949 4908 81 40 9 chr1 47806496 47806587 -149388845 + Lx3_Mus LINE L1 6914 7009 0 3 949 3130 49 0 0 chr1 47807539 47807926 -149387506 + L1Md_F2 LINE L1 6184 6570 -12 3 949 454 308 68 22 chr1 47807955 47808177 -149387255 - MLT1A0 LTR MaLR 0 390 136 3 949 719 333 12 41 chr1 47808169 47808413 -149387019 - 7SK RNA RNA -93 238 2 3 949 309 252 250 9 chr1 47808419 47808535 -149386897 - MLT1A0 LTR MaLR -226 148 5 3 949 602 264 52 56 chr1 47808639 47808888 -149386544 - Lx9 LINE L1 -462 7182 6935 3 949 35760 50 9 8 chr1 47809317 47814607 -149380825 + L1Md_A LINE L1 331 5586 -297 3 949 8726 18 0 0 chr1 47814607 47815603 -149379829 + L1Md_A LINE L1 5587 6582 0 3 949 861 246 10 5 chr1 47815605 47815805 -149379627 - L1_Mur3 LINE L1 -214 5666 5466 3 949 391 306 14 7 chr1 47815809 47815947 -149379485 + ORR1C1 LTR MaLR 1 139 -239 3 949 3060 9 0 0 chr1 47816192 47816536 -149378896 + L1Md_T LINE L1 5243 5586 -297 3 949 8389 36 0 0 chr1 47816536 47817532 -149377900 + L1Md_T LINE L1 5587 6582 0 3 949 354 265 47 6 chr1 47817612 47817783 -149377649 + Lx9 LINE L1 7465 7642 -2 3 949 4402 107 11 87 chr1 47819004 47819817 -149375615 - RMER17A LTR ERVK 0 751 1 3 949 26 0 0 0 chr1 47820194 47820220 -149375212 + AT_rich Low_complexity Low_complexity 1 26 0 3 949 450 296 174 16 chr1 47820733 47821104 -149374328 - Lx9 LINE L1 -174 7470 7042 3 949 326 290 0 84 chr1 47822322 47822465 -149372967 + MLT2B4 LTR ERVL 1 131 -425 3 949 1726 160 39 39 chr1 47822471 47822802 -149372630 + RMER20B LTR ERVK 10 340 -287 3 949 536 260 16 70 chr1 47822861 47823047 -149372385 - Lx9 LINE L1 -457 7187 7012 3 949 570 282 75 62 chr1 47823042 47823269 -149372163 + Lx9 LINE L1 6615 6844 -800 3 949 324 341 65 70 chr1 47823543 47823773 -149371659 - LTR40a LTR ERVL -15 504 276 3 949 566 268 30 18 chr1 47824272 47824439 -149370993 + Lx7 LINE L1 6866 7034 -662 3 949 253 82 26 64 chr1 47824439 47824517 -149370915 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 3 949 1051 282 7 11 chr1 47824518 47824794 -149370638 + Lx6 LINE L1 7014 7288 -172 3 949 275 130 39 13 chr1 47825321 47825399 -149370033 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 949 258 289 36 29 chr1 47825399 47825538 -149369894 + Lx9 LINE L1 7477 7616 -28 3 949 189 339 26 52 chr1 47825624 47825739 -149369693 - L2c LINE L2 0 3387 3276 3 949 484 332 21 11 chr1 47826512 47826698 -149368734 + RMER15 LTR ERVL 288 475 -100 3 949 318 362 31 31 chr1 47827107 47827301 -149368131 - L2c LINE L2 -448 2971 2778 3 949 344 347 16 8 chr1 47827318 47827440 -149367992 + Tigger1 DNA MER2_type 2 124 -2294 3 949 255 337 104 33 chr1 47827432 47827644 -149367788 + Tigger1 DNA MER2_type 2184 2410 -8 3 949 378 0 0 0 chr1 47828742 47828784 -149366648 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 949 27 0 0 0 chr1 47828800 47828827 -149366605 + AT_rich Low_complexity Low_complexity 1 27 0 3 949 1894 175 27 32 chr1 47828830 47829202 -149366230 - Lx4A LINE L1 -5 7053 6684 3 949 2138 172 24 3 chr1 47829202 47829574 -149365858 + Lx4A LINE L1 6303 6682 -376 3 949 21 0 0 0 chr1 47829728 47829749 -149365683 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 1581 42 5 0 chr1 47830942 47831134 -149364298 - B2_Mm1t SINE B2 0 193 1 3 949 1561 208 101 16 chr1 47831909 47832353 -149363079 + Lx9 LINE L1 7162 7643 -1 3 949 289 301 14 76 chr1 47832550 47832694 -149362738 + RMER4B LTR ERVK 26 160 -425 3 949 3020 57 8 0 chr1 47833259 47833688 -149361744 + L1Md_F3 LINE L1 6192 6584 0 3 949 609 52 0 0 chr1 47833771 47833848 -149361584 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 949 1417 221 22 0 chr1 47835497 47835768 -149359664 + ORR1B2 LTR MaLR 83 359 -8 3 949 34 0 0 0 chr1 47836178 47836212 -149359220 + AT_rich Low_complexity Low_complexity 1 34 0 3 949 334 233 39 0 chr1 47836687 47836790 -149358642 + Lx9 LINE L1 7389 7495 -149 3 118 32262 94 15 8 chr1 47837058 47841691 -149353741 + L1Md_F2 LINE L1 217 5277 -606 3 950 6735 68 38 2 chr1 47841691 47842588 -149352844 + RLTR13B3 LTR ERVK 1 929 0 3 950 32262 74 6 2 chr1 47842588 47843511 -149351921 + L1Md_F2 LINE L1 5278 6201 -381 3 950 3149 68 75 24 chr1 47843512 47843964 -149351468 + IAPLTR2_Mm LTR ERVK 1 475 0 3 950 1213 132 66 21 chr1 47843966 47844361 -149351071 + IAPEz-int LTR ERVK 3 269 -7312 3 950 227 267 0 0 chr1 47844363 47844408 -149351024 + RLTR27 LTR ERVK 231 275 -34 3 950 4936 82 89 55 chr1 47844410 47845275 -149350157 + IAPEz-int LTR ERVK 170 995 -5486 3 950 388 123 0 0 chr1 47845275 47845332 -149350100 + B1_Mus1 SINE Alu 1 57 -91 3 950 1858 88 0 0 chr1 47845337 47845577 -149349855 + IAPEY3-int LTR ERVK 2258 2497 -5183 3 950 13645 74 19 6 chr1 47845576 47847378 -149348054 + IAPEz-int LTR ERVK 4656 6481 0 3 950 3139 52 77 26 chr1 47847378 47847830 -149347602 + IAPLTR2_Mm LTR ERVK 1 475 0 3 950 2879 62 0 5 chr1 47847830 47848204 -149347228 + L1Md_F2 LINE L1 6197 6568 -14 3 950 413 0 0 37 chr1 47848771 47848825 -149346607 + (TAA)n Simple_repeat Simple_repeat 1 52 0 3 950 624 335 0 19 chr1 47850433 47850594 -149344838 - RSINE1 SINE B4 0 165 8 3 950 31 44 0 0 chr1 47850768 47850813 -149344619 + AT_rich Low_complexity Low_complexity 1 45 0 3 950 4148 163 24 11 chr1 47850962 47851683 -149343749 + RMER19A LTR ERVK 1 730 -7 3 950 937 351 211 19 chr1 47851754 47852491 -149342941 - Lx8 LINE L1 -247 7226 6348 3 950 218 395 0 12 chr1 47852644 47852726 -149342706 - RSINE1 SINE B4 -82 83 3 3 950 278 50 0 24 chr1 47852830 47852871 -149342561 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 950 327 49 0 0 chr1 47853644 47853685 -149341747 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 950 381 86 0 0 chr1 47854035 47854093 -149341339 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 950 2122 110 0 0 chr1 47855648 47855940 -149339492 - L1_Mm LINE L1 -46 5837 5546 4 950 3783 73 8 0 chr1 47855941 47856434 -149338998 + L1_Mus1 LINE L1 6071 6567 0 4 950 218 217 0 0 chr1 47856437 47856483 -149338949 + A-rich Low_complexity Low_complexity 1 46 0 4 950 28 95 0 0 chr1 47856864 47856948 -149338484 + AT_rich Low_complexity Low_complexity 1 84 0 4 950 765 228 0 0 chr1 47856956 47857092 -149338340 + B1_Mur2 SINE Alu 1 136 -13 4 950 21 0 0 0 chr1 47857750 47857771 -149337661 + AT_rich Low_complexity Low_complexity 1 21 0 4 950 1353 158 385 0 chr1 47858974 47859296 -149336136 - RLTR41 LTR ERV1 0 446 1 4 950 936 325 28 23 chr1 47859669 47860245 -149335187 + RMER16-int LTR ERVK 4444 5022 -384 4 950 1393 210 40 20 chr1 47861069 47861366 -149334066 - ORR1B1 LTR MaLR -51 343 41 4 950 224 349 17 61 chr1 47861667 47861688 -149333744 - B2_Mm2 SINE B2 -18 177 55 4 950 591 305 13 13 chr1 47861688 47861841 -149333591 - RSINE1 SINE B4 0 165 13 4 950 4576 130 27 8 chr1 47861853 47862970 -149332462 - Lx LINE L1 -386 6268 5123 4 950 267 335 84 114 chr1 47863139 47863473 -149331959 - RLTR17 LTR ERVK -254 438 115 4 950 33 25 0 0 chr1 47865312 47865352 -149330080 + AT_rich Low_complexity Low_complexity 1 40 0 4 950 28 0 0 0 chr1 47867304 47867332 -149328100 + AT_rich Low_complexity Low_complexity 1 28 0 4 950 341 324 93 40 chr1 47868542 47868693 -149326739 - B3A SINE B2 -6 192 34 4 950 1647 230 127 81 chr1 47868841 47869518 -149325914 + RMER6D LTR ERVK 3 710 -10 4 950 1352 189 296 16 chr1 47869720 47870102 -149325330 - RLTR19A LTR ERVK -1 495 7 4 950 783 281 39 24 chr1 47870619 47870827 -149324605 - B3 SINE B2 -4 212 2 4 950 338 269 172 0 chr1 47870907 47871041 -149324391 + Lx9 LINE L1 6985 7141 -503 4 950 205 336 61 14 chr1 47871458 47871606 -149323826 - L2 LINE L2 -1159 2260 2106 4 950 591 262 26 46 chr1 47871933 47872085 -149323347 + B3 SINE B2 1 149 -67 4 950 455 299 49 49 chr1 47872150 47872333 -149323099 + B3A SINE B2 1 183 -15 4 950 980 145 251 8 chr1 47872343 47872603 -149322829 - L1_Mur2 LINE L1 -4446 1431 1108 4 950 3657 201 55 7 chr1 47872620 47873383 -149322049 - Lx3C LINE L1 -2 6974 6175 4 950 1682 185 13 0 chr1 47873379 47873687 -149321745 - Lx3C LINE L1 -951 6025 5714 4 950 1152 141 15 20 chr1 47873687 47873890 -149321542 + Lx3C LINE L1 5515 5716 -170 4 950 1924 224 5 5 chr1 47873892 47874301 -149321131 - L1_Mur2 LINE L1 -6251 835 427 4 950 738 134 90 0 chr1 47875990 47876124 -149319308 - URR1A DNA MER1_type 0 226 81 4 950 252 243 0 0 chr1 47876887 47876961 -149318471 + GA-rich Low_complexity Low_complexity 3 76 0 4 950 537 332 14 43 chr1 47877068 47877279 -149318153 - B3 SINE B2 -3 213 9 4 950 399 339 75 45 chr1 47877333 47877534 -149317898 + MTEa LTR MaLR 1 207 -172 4 950 225 0 0 0 chr1 47877554 47877579 -149317853 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 950 2217 112 82 3 chr1 47877823 47878164 -149317268 + RLTR9A LTR ERVK 1 368 0 4 950 7752 38 4 11 chr1 47878255 47879218 -149316214 - L1Md_F3 LINE L1 -14 6570 5615 4 950 312 186 65 85 chr1 47879629 47879782 -149315650 - L1M5 LINE L1 -918 5228 5079 4 950 306 0 0 0 chr1 47879841 47879875 -149315557 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 950 316 324 58 21 chr1 47880134 47880323 -149315109 + L1MA8 LINE L1 5902 6097 -194 4 950 228 255 135 45 chr1 47881021 47881132 -149314300 - MamGypLTR1a LTR Gypsy -620 164 44 4 950 844 95 15 0 chr1 47882865 47883002 -149312430 + (GA)n Simple_repeat Simple_repeat 1 139 0 4 950 800 319 36 24 chr1 47883018 47883352 -149312080 - Lx7 LINE L1 -432 7264 6927 4 950 1331 233 239 30 chr1 47883352 47883821 -149311611 - RMER2 LTR ERV1 0 567 1 4 950 230 250 36 0 chr1 47883826 47883882 -149311550 - Lx7 LINE L1 -771 6925 6868 4 950 1927 129 99 29 chr1 47883964 47884346 -149311086 - RLTR9E LTR ERVK 0 409 1 4 950 211 184 0 0 chr1 47884534 47884571 -149310861 + T-rich Low_complexity Low_complexity 13 49 0 4 950 234 0 0 0 chr1 47884571 47884597 -149310835 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 950 2453 78 3 11 chr1 47884597 47884957 -149310475 - L1Md_F2 LINE L1 0 6582 6235 4 950 22 35 0 0 chr1 47885390 47885419 -149310013 + AT_rich Low_complexity Low_complexity 1 29 0 4 950 22 0 0 0 chr1 47885620 47885642 -149309790 + AT_rich Low_complexity Low_complexity 1 22 0 4 950 180 176 0 0 chr1 47886123 47886157 -149309275 + A-rich Low_complexity Low_complexity 1 34 0 4 950 721 233 22 102 chr1 47886220 47886445 -149308987 + B3 SINE B2 5 211 -5 4 950 33 25 0 0 chr1 47887544 47887584 -149307848 + AT_rich Low_complexity Low_complexity 1 40 0 4 950 474 221 37 0 chr1 47887597 47887733 -149307699 + Lx9 LINE L1 7503 7643 -1 4 950 22 0 0 0 chr1 47887733 47887755 -149307677 + AT_rich Low_complexity Low_complexity 1 22 0 4 950 395 311 172 8 chr1 47887793 47888049 -149307383 + MTEb LTR MaLR 82 379 0 4 950 224 291 24 60 chr1 47888380 47888464 -149306968 - B1F1 SINE Alu -50 99 19 4 950 201 108 0 0 chr1 47888957 47888994 -149306438 + (T)n Simple_repeat Simple_repeat 1 37 0 4 950 1218 61 0 0 chr1 47888996 47889143 -149306289 - B1_Mus2 SINE Alu 0 147 1 4 950 234 300 0 0 chr1 47889236 47889296 -149306136 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 950 246 329 26 0 chr1 47889511 47889587 -149305845 + ID4_ SINE ID 6 83 0 4 950 235 163 54 94 chr1 47889616 47889765 -149305667 + (TTATA)n Simple_repeat Simple_repeat 5 147 0 4 950 225 167 0 0 chr1 47889860 47889896 -149305536 - L1MD LINE L1 -576 5666 5631 4 950 1529 221 79 8 chr1 47889916 47890272 -149305160 + ORR1C2 LTR MaLR 1 381 -3 4 950 3297 266 52 41 chr1 47890275 47891438 -149303994 + ORR1C2-int LTR MaLR 1 1175 -334 4 950 21 36 0 0 chr1 47891438 47891466 -149303966 + AT_rich Low_complexity Low_complexity 1 28 0 4 950 271 78 39 0 chr1 47891580 47891631 -149303801 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 950 180 0 0 0 chr1 47891631 47891651 -149303781 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 950 3230 43 0 0 chr1 47891729 47892122 -149303310 + L1_Mm LINE L1 4815 5207 -676 4 950 353 189 12 46 chr1 47892123 47892250 -149303182 + ORR1C2-int LTR MaLR 1163 1311 -269 4 950 244 254 14 0 chr1 47892295 47892366 -149303066 + L1M5 LINE L1 5367 5438 -686 4 950 1575 57 5 0 chr1 47892555 47892764 -149302668 - L1Md_F2 LINE L1 -2 6580 6371 4 950 378 331 15 45 chr1 47892822 47892955 -149302477 + B1_Mm SINE Alu 5 133 -14 4 950 225 65 0 0 chr1 47892955 47892986 -149302446 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 950 656 159 6 0 chr1 47894155 47894331 -149301101 + CT-rich Low_complexity Low_complexity 1 177 0 4 950 24 53 0 0 chr1 47894435 47894473 -149300959 + AT_rich Low_complexity Low_complexity 1 38 0 4 950 21 36 0 0 chr1 47894665 47894693 -149300739 + AT_rich Low_complexity Low_complexity 1 28 0 4 950 423 0 0 0 chr1 47895385 47895432 -149300000 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 950 418 315 16 8 chr1 47895487 47895615 -149299817 - RSINE1 SINE B4 -1 164 36 4 950 400 283 13 46 chr1 47895676 47895828 -149299604 - B1F SINE Alu -2 147 1 4 950 204 158 0 0 chr1 47895922 47895960 -149299472 + A-rich Low_complexity Low_complexity 2 39 0 4 950 491 345 9 50 chr1 47895970 47896190 -149299242 - ID_B1 SINE B4 -7 217 7 4 950 236 241 91 57 chr1 47897650 47897738 -149297694 - MTC-int LTR MaLR -703 555 465 4 950 1796 345 59 5 chr1 47897738 47898556 -149296876 - Lx8 LINE L1 -237 7236 6375 4 950 531 0 0 0 chr1 47898798 47898857 -149296575 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 4 950 325 352 87 8 chr1 47898859 47898985 -149296447 - B1F SINE Alu -8 141 6 4 950 2676 25 35 0 chr1 47899006 47899322 -149296110 - IAPLTR2b LTR ERVK 0 327 1 4 950 1758 239 33 70 chr1 47899416 47899934 -149295498 - RLTR20B3 LTR ERVK -58 519 21 4 950 1057 172 113 0 chr1 47900229 47900432 -149295000 - URR1A DNA MER1_type 0 226 1 4 950 344 216 6 162 chr1 47900559 47900719 -149294713 - Lx7 LINE L1 0 7696 7562 4 950 380 203 0 0 chr1 47900719 47900783 -149294649 + B1_Mm SINE Alu 78 141 -6 4 950 712 206 38 42 chr1 47900819 47901032 -149294400 - Lx7 LINE L1 -129 7567 7356 4 950 13659 137 42 24 chr1 47901056 47904810 -149290622 + Lx3B LINE L1 3142 6970 -3 4 950 24 77 0 0 chr1 47904811 47904863 -149290569 + AT_rich Low_complexity Low_complexity 1 52 0 4 950 3957 273 74 35 chr1 47904881 47906232 -149289200 - Lx7 LINE L1 -354 7342 5939 4 950 236 289 35 69 chr1 47906255 47906400 -149289032 - Charlie7 DNA MER1_type -2168 444 305 4 950 612 0 0 0 chr1 47908211 47908279 -149287153 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 950 378 0 0 0 chr1 47910174 47910216 -149285216 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 950 24 0 0 0 chr1 47910507 47910531 -149284901 + AT_rich Low_complexity Low_complexity 1 24 0 4 950 319 301 148 17 chr1 47911742 47911857 -149283575 - RSINE1 SINE B4 -31 134 5 4 950 183 349 91 0 chr1 47913052 47913118 -149282314 - L2 LINE L2 -2855 564 493 4 950 398 244 62 64 chr1 47913120 47913363 -149282069 + L1MA7 LINE L1 6043 6273 -39 4 950 248 314 0 40 chr1 47915762 47915888 -149279544 - L1M2 LINE L1 -2607 3536 3416 4 950 306 319 62 77 chr1 47915937 47915974 -149279458 - L1M2 LINE L1 -2677 3466 3421 4 950 1158 62 7 0 chr1 47915974 47916118 -149279314 - B1_Mm SINE Alu -1 146 2 4 950 306 319 62 77 chr1 47916118 47916433 -149278999 - L1M2 LINE L1 -2723 3420 3120 4 950 22 35 0 0 chr1 47916579 47916608 -149278824 + AT_rich Low_complexity Low_complexity 1 29 0 4 950 27 0 0 0 chr1 47916635 47916662 -149278770 + AT_rich Low_complexity Low_complexity 1 27 0 4 950 23 0 0 0 chr1 47917046 47917069 -149278363 + AT_rich Low_complexity Low_complexity 1 23 0 4 950 948 155 0 0 chr1 47917089 47917231 -149278201 - B1_Mus2 SINE Alu -2 145 4 4 950 330 267 9 71 chr1 47917255 47917368 -149278064 - Lx7 LINE L1 -37 7659 7554 5 950 961 239 0 10 chr1 47917378 47917585 -149277847 + ORR1B2 LTR MaLR 171 375 -3 5 950 3793 242 160 32 chr1 47917588 47918924 -149276508 + ORR1B2-int LTR MaLR 1 1507 -2 5 950 1561 212 51 11 chr1 47918926 47919279 -149276153 + ORR1B2 LTR MaLR 1 367 0 5 950 257 280 40 0 chr1 47919509 47919584 -149275848 - B4A SINE B4 -16 276 199 5 950 248 241 43 141 chr1 47919867 47919959 -149275473 - B4A SINE B4 -208 84 2 5 950 251 350 62 0 chr1 47919959 47920051 -149275381 - MTEa LTR MaLR -199 180 83 5 950 238 308 162 0 chr1 47920179 47920296 -149275136 - B1F1 SINE Alu -13 136 1 5 950 258 56 0 0 chr1 47922024 47922060 -149273372 + (A)n Simple_repeat Simple_repeat 1 36 0 5 950 2153 200 127 8 chr1 47922413 47922500 -149272932 - RLTR20B1 LTR ERVK 0 563 472 5 950 180 0 0 0 chr1 47922500 47922520 -149272912 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 950 2153 200 127 8 chr1 47922520 47922935 -149272497 - RLTR20B1 LTR ERVK -92 471 2 5 950 219 146 0 0 chr1 47922942 47922983 -149272449 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 950 26 0 0 0 chr1 47923362 47923388 -149272044 + AT_rich Low_complexity Low_complexity 1 26 0 5 950 699 316 18 37 chr1 47923388 47923605 -149271827 - B3A SINE B2 -3 213 1 5 950 1193 107 38 33 chr1 47924359 47924571 -149270861 - L1Md_F3 LINE L1 0 6584 6372 5 950 35378 69 4 19 chr1 47924571 47930941 -149264491 - L1Md_F2 LINE L1 -13 6569 301 5 950 214 271 81 23 chr1 47931601 47931688 -149263744 + L2a LINE L2 3235 3326 -100 5 950 1017 144 61 0 chr1 47931729 47931909 -149263523 - B2_Mm1a SINE B2 -2 191 1 5 950 373 364 83 34 chr1 47933065 47933270 -149262162 + B4A SINE B4 1 215 -77 5 950 23 33 0 0 chr1 47933525 47933555 -149261877 + AT_rich Low_complexity Low_complexity 1 30 0 5 950 4341 162 17 32 chr1 47934365 47935262 -149260170 + L1Md_A LINE L1 217 1313 -5411 5 950 33200 78 6 1 chr1 47935263 47940444 -149254988 + L1Md_F2 LINE L1 285 5589 -297 5 950 7528 65 20 0 chr1 47940444 47941419 -149254013 + L1Md_F2 LINE L1 5590 6584 -1 5 950 23377 78 6 1 chr1 47941419 47945647 -149249785 + L1Md_F2 LINE L1 1309 5585 -298 5 950 7619 66 2 4 chr1 47945648 47946634 -149248798 + L1Md_F2 LINE L1 5587 6570 -12 5 950 377 19 0 0 chr1 47947020 47947073 -149248359 - L1Md_T LINE L1 -1 6581 6529 5 950 380 339 46 0 chr1 47947439 47947569 -149247863 + RSINE1 SINE B4 7 142 -23 5 950 21 0 0 0 chr1 47948108 47948129 -149247303 + AT_rich Low_complexity Low_complexity 1 21 0 5 950 248 158 18 0 chr1 47948164 47948221 -149247211 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 950 3005 56 0 0 chr1 47948310 47948688 -149246744 + L1Md_T LINE L1 6204 6581 -1 5 950 33 43 0 0 chr1 47948875 47948922 -149246510 + AT_rich Low_complexity Low_complexity 1 47 0 5 950 225 0 0 0 chr1 47949377 47949402 -149246030 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 950 303 361 53 18 chr1 47949529 47949673 -149245759 - MLT1E2 LTR MaLR -160 520 308 5 950 1061 292 101 22 chr1 47949856 47950203 -149245229 - MTE2b LTR MaLR 0 370 5 5 950 454 306 12 31 chr1 47950218 47950380 -149245052 - Lx5 LINE L1 -5 7045 6887 5 950 1623 180 21 27 chr1 47950555 47950978 -149244454 - RMER17C LTR ERVK -519 439 16 5 950 27 0 0 0 chr1 47951903 47951930 -149243502 + AT_rich Low_complexity Low_complexity 1 27 0 5 950 312 120 0 0 chr1 47952090 47952140 -149243292 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 950 1755 197 75 45 chr1 47952533 47953043 -149242389 + RLTR11A2 LTR ERVK 1 525 -2 5 950 736 282 174 15 chr1 47953300 47953628 -149241804 + RLTR45 LTR ERVK 103 482 0 5 950 195 42 0 0 chr1 47953957 47953981 -149241451 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 950 340 289 50 12 chr1 47954672 47954833 -149240599 - L1M3 LINE L1 -1137 5003 4837 5 950 369 280 103 28 chr1 47955100 47955118 -149240314 - CYRA11_Mm Unknown Y-chromosome -228 389 260 5 950 909 185 33 0 chr1 47955118 47955302 -149240130 + URR1A DNA MER1_type 37 226 0 5 950 369 280 103 28 chr1 47955302 47955313 -149240119 - CYRA11_Mm Unknown Y-chromosome -228 259 161 5 950 2266 187 45 19 chr1 47956472 47956940 -149238492 - RMER6D LTR ERVK -240 480 1 5 950 29 108 0 0 chr1 47956944 47957064 -149238368 + AT_rich Low_complexity Low_complexity 1 120 0 5 950 447 382 36 0 chr1 47957090 47957255 -149238177 - B3A SINE B2 -22 176 6 5 950 276 365 56 0 chr1 47957341 47957467 -149237965 + ID_B1 SINE B4 90 222 -2 5 950 27 73 0 0 chr1 47957482 47957537 -149237895 + AT_rich Low_complexity Low_complexity 1 55 0 5 950 434 374 50 31 chr1 47958600 47958760 -149236672 - RSINE1 SINE B4 0 165 3 5 950 6311 61 0 0 chr1 47959694 47960739 -149234693 - L1Md_F2 LINE L1 -221 6361 5317 5 950 692 264 32 38 chr1 47960813 47960998 -149234434 + 7SLRNA srpRNA srpRNA 16 199 -115 5 950 210 37 0 0 chr1 47961540 47961567 -149233865 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 950 387 56 0 0 chr1 47962043 47962097 -149233335 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 950 589 266 63 29 chr1 47962253 47962458 -149232974 + B3 SINE B2 5 216 0 5 950 185 65 0 31 chr1 47962662 47962694 -149232738 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 5 950 2049 200 48 48 chr1 47964400 47964878 -149230554 - Lx3C LINE L1 -2 6974 6497 5 950 7116 152 28 6 chr1 47964874 47966141 -149229291 - L1_Mur1 LINE L1 -373 5513 4218 5 950 205 170 0 41 chr1 47966238 47966287 -149229145 + A-rich Low_complexity Low_complexity 3 49 0 5 950 474 304 108 30 chr1 47966353 47966584 -149228848 - B4A SINE B4 -42 250 2 5 950 1677 185 48 3 chr1 47968494 47968782 -149226650 + RLTR31A_Mm LTR ERVK 1 298 -286 5 950 5727 104 7 8 chr1 47968782 47969624 -149225808 + L1_Mus4 LINE L1 5791 6631 -5 5 950 1677 185 48 3 chr1 47969624 47969672 -149225760 + RLTR31A_Mm LTR ERVK 299 351 -233 5 950 1298 310 73 20 chr1 47969791 47970297 -149225135 + MER89 LTR ERV1 27 559 0 5 951 22 35 0 0 chr1 47973926 47973955 -149221477 + AT_rich Low_complexity Low_complexity 1 29 0 5 951 21 0 0 0 chr1 47974641 47974662 -149220770 + AT_rich Low_complexity Low_complexity 1 21 0 5 951 359 339 0 0 chr1 47974996 47975108 -149220324 + MER5A1 DNA MER1_type 49 160 -6 5 951 22 0 0 0 chr1 47975476 47975498 -149219934 + AT_rich Low_complexity Low_complexity 1 22 0 5 951 1178 189 0 16 chr1 47978675 47978933 -149216499 - Lx2 LINE L1 -1 6996 6743 5 951 336 261 0 0 chr1 47979294 47979372 -149216060 - B2_Mm2 SINE B2 -117 81 4 5 951 297 0 0 0 chr1 47980880 47980913 -149214519 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 951 183 304 0 0 chr1 47981622 47981668 -149213764 + L2a LINE L2 3340 3385 -41 5 951 22 70 0 0 chr1 47982051 47982094 -149213338 + AT_rich Low_complexity Low_complexity 1 43 0 5 951 380 209 7 21 chr1 47982269 47982393 -149213039 + (TA)n Simple_repeat Simple_repeat 2 123 0 5 951 258 81 0 0 chr1 47982393 47982430 -149213002 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 951 380 209 7 21 chr1 47982430 47982447 -149212985 + (TA)n Simple_repeat Simple_repeat 1 17 0 5 951 222 198 40 50 chr1 47983390 47983491 -149211941 + (TG)n Simple_repeat Simple_repeat 1 100 0 5 951 183 136 33 17 chr1 47983506 47983566 -149211866 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 951 263 71 24 0 chr1 47983658 47983700 -149211732 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 951 1394 207 107 16 chr1 47983802 47984176 -149211256 - RMER16 LTR ERVK 0 533 3 5 951 1776 178 167 24 chr1 47984674 47985129 -149210303 + RLTR28 LTR ERVL 1 520 -4 5 951 216 97 0 0 chr1 47985618 47985649 -149209783 + (A)n Simple_repeat Simple_repeat 1 31 0 5 951 351 225 132 42 chr1 47985710 47985877 -149209555 - Lx7 LINE L1 0 7696 7515 5 951 225 0 0 0 chr1 47985910 47985935 -149209497 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 951 624 237 44 17 chr1 47985935 47986115 -149209317 - Lx7 LINE L1 -281 7415 7231 5 951 468 219 19 19 chr1 47986096 47986203 -149209229 + Lx7 LINE L1 5613 5719 -1977 5 951 215 408 16 31 chr1 47986575 47986704 -149208728 + RSINE1 SINE B4 3 129 -36 5 951 994 182 26 140 chr1 47986715 47987066 -149208366 + RLTRETN_Mm LTR ERVK 12 322 0 5 951 49 43 0 0 chr1 47987263 47987333 -149208099 + AT_rich Low_complexity Low_complexity 1 70 0 5 951 210 150 0 0 chr1 47989273 47989313 -149206119 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 951 237 65 0 0 chr1 47990924 47990955 -149204477 + (T)n Simple_repeat Simple_repeat 1 31 0 5 951 27 49 0 0 chr1 47990990 47991031 -149204401 + AT_rich Low_complexity Low_complexity 1 41 0 5 951 330 26 0 0 chr1 47991189 47991228 -149204204 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 951 1141 229 5 0 chr1 47991494 47991712 -149203720 - URR1B DNA MER1_type 0 225 7 5 951 390 314 37 65 chr1 47991712 47991732 -149203700 + CYRA11_Mm Unknown Y-chromosome 216 401 -216 5 951 276 376 50 19 chr1 47992130 47992290 -149203142 - MER2B DNA MER2_type -6 330 166 5 951 297 349 47 0 chr1 47992546 47992632 -149202800 + RSINE1 SINE B4 72 161 -4 5 951 534 148 0 0 chr1 47993208 47993309 -149202123 + (CA)n Simple_repeat Simple_repeat 1 101 0 5 951 6632 4 0 1 chr1 47993445 47994191 -149201241 + L1Md_A LINE L1 4842 5586 -297 5 951 9002 3 0 0 chr1 47994191 47995187 -149200245 + L1Md_A LINE L1 5587 6582 0 5 951 180 0 0 0 chr1 47995332 47995352 -149200080 + (A)n Simple_repeat Simple_repeat 1 20 0 5 951 34 65 0 0 chr1 47995739 47995801 -149199631 + AT_rich Low_complexity Low_complexity 1 62 0 5 951 307 308 8 17 chr1 47996403 47996522 -149198910 + CT-rich Low_complexity Low_complexity 2 119 0 5 951 257 351 0 25 chr1 47996524 47996603 -149198829 - ID4_ SINE ID -1 82 6 5 951 352 244 179 0 chr1 47997090 47997213 -149198219 - L1MC3 LINE L1 -439 7346 7202 5 951 418 314 70 6 chr1 47997296 47997453 -149197979 - B3A SINE B2 -30 168 2 5 951 561 183 41 8 chr1 47997792 47997913 -149197519 - RLTR22_Mur LTR ERVK -113 1735 1611 5 951 1951 194 66 51 chr1 47997976 47998448 -149196984 - RLTR22_Mur LTR ERVK -1039 809 331 5 951 243 244 30 100 chr1 47998447 47998547 -149196885 + RLTR23 LTR ERV1 300 392 -38 5 951 2171 175 30 36 chr1 47998549 47999112 -149196320 - RMER17A2 LTR ERVK -306 583 1 5 951 346 304 83 140 chr1 47999112 47999356 -149196076 + MTD LTR MaLR 163 391 -28 6 951 2467 256 76 91 chr1 48000478 48001351 -149194081 + RMER13A LTR ERVK 1 860 0 1 951 303 117 375 19 chr1 48001751 48001855 -149193577 - B2_Mm2 SINE B2 -8 187 47 2 951 997 132 72 0 chr1 48001902 48002068 -149193364 - B2_Mm1a SINE B2 -14 179 2 3 951 1660 194 196 5 chr1 48002975 48003348 -149192084 + RLTR41 LTR ERV1 3 446 0 4 951 22 0 0 0 chr1 48004635 48004657 -149190775 + AT_rich Low_complexity Low_complexity 1 22 0 5 951 24 0 0 0 chr1 48007163 48007187 -149188245 + AT_rich Low_complexity Low_complexity 1 24 0 6 951 28747 28 0 1 chr1 48008555 48012663 -149182769 - L1Md_A LINE L1 -1 6581 2475 7 951 2396 95 80 21 chr1 48012663 48013051 -149182381 - IAPLTR2a LTR ERVK 0 411 1 8 951 5994 49 4 7 chr1 48013053 48013799 -149181633 - IAPEz-int LTR ERVK -2 6479 5736 8 951 2162 83 0 0 chr1 48013798 48014076 -149181356 - IAPEz-int LTR ERVK -4845 1636 1359 8 951 3512 71 4 21 chr1 48014076 48014732 -149180700 - IAPEz-int LTR ERVK -5819 662 94 8 951 227 267 0 0 chr1 48014735 48014780 -149180652 - RLTR27 LTR ERVK -34 275 231 9 951 566 133 16 124 chr1 48014780 48014909 -149180523 - IAPEz-int LTR ERVK -6358 123 9 8 951 2396 95 80 21 chr1 48014910 48015298 -149180134 - IAPLTR2a LTR ERVK 0 411 1 8 951 10340 39 2 18 chr1 48015298 48017357 -149178075 - L1Md_A LINE L1 -3403 2480 462 1 951 2096 60 0 0 chr1 48017410 48017676 -149177756 - L1Md_T LINE L1 0 6582 6317 1 951 294 50 0 0 chr1 48018045 48018085 -149177347 + (A)n Simple_repeat Simple_repeat 1 40 0 1 951 320 391 35 46 chr1 48020289 48020635 -149174797 - L1MC1 LINE L1 -45 6288 5947 1 951 23 0 0 0 chr1 48020664 48020687 -149174745 + AT_rich Low_complexity Low_complexity 1 23 0 1 951 1691 206 36 14 chr1 48022347 48022786 -149172646 + L1_Mur2 LINE L1 865 1313 -5773 1 951 8494 219 99 59 chr1 48022775 48025972 -149169460 + L1_Mur2 LINE L1 2344 5668 -209 1 951 3138 42 20 12 chr1 48025972 48026380 -149169052 + IAPLTR2a LTR ERVK 1 411 0 1 951 1077 112 47 63 chr1 48026381 48026657 -149168775 + IAPEz-int LTR ERVK 9 252 -7329 1 951 244 302 0 0 chr1 48026657 48026710 -149168722 + RLTR27 LTR ERVK 223 275 -34 1 951 3444 65 20 16 chr1 48026710 48027275 -149168157 + IAPEz-int LTR ERVK 168 662 -5819 1 951 2664 67 0 3 chr1 48027275 48027618 -149167814 + IAPEz-int LTR ERVK 1359 1700 -4781 1 951 6791 38 7 11 chr1 48027613 48028445 -149166987 + IAPEz-int LTR ERVK 5653 6481 0 1 951 3174 40 20 12 chr1 48028445 48028853 -149166579 + IAPLTR2a LTR ERVK 1 411 0 1 951 1276 20 0 0 chr1 48028853 48029002 -149166430 + L1Md_F2 LINE L1 5669 5817 -765 1 951 509 15 0 14 chr1 48029002 48029071 -149166361 + L1Md_F2 LINE L1 6500 6567 -15 1 951 3615 169 2 16 chr1 48029608 48030240 -149165192 + Lx2 LINE L1 6021 6643 -354 1 951 1277 111 19 28 chr1 48030240 48030453 -149164979 + Lx2 LINE L1 6775 6985 -12 1 951 23 33 0 0 chr1 48030522 48030552 -149164880 + AT_rich Low_complexity Low_complexity 1 30 0 2 951 518 29 15 0 chr1 48031151 48031219 -149164213 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 951 255 242 0 120 chr1 48031227 48031302 -149164130 - ORR1D2 LTR MaLR -70 300 235 2 951 456 19 0 0 chr1 48031459 48031512 -149163920 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 951 592 210 6 77 chr1 48031512 48031682 -149163750 - RLTR9A LTR ERVK -2 366 209 2 951 23 54 0 0 chr1 48033039 48033076 -149162356 + AT_rich Low_complexity Low_complexity 1 37 0 2 951 469 139 0 95 chr1 48033537 48033632 -149161800 - B1_Mus2 SINE Alu 0 147 62 2 951 407 316 63 50 chr1 48033836 48034208 -149161224 + Lx8 LINE L1 5506 5919 -1725 2 951 4938 158 31 21 chr1 48034318 48035253 -149160179 - L1_Mur2 LINE L1 -1221 4656 3713 2 951 5756 172 88 1 chr1 48035253 48035774 -149159658 + Lx LINE L1 4670 5229 -654 2 951 384 22 0 0 chr1 48035774 48035819 -149159613 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 951 7013 130 32 6 chr1 48035819 48037177 -149158255 + Lx LINE L1 5230 6654 0 2 951 546 304 16 16 chr1 48037506 48037693 -149157739 + Lx8 LINE L1 6200 6386 -1087 2 951 380 326 20 20 chr1 48037691 48037838 -149157594 + Lx8 LINE L1 6522 6668 -805 2 951 241 314 51 22 chr1 48037915 48038052 -149157380 - L1M2 LINE L1 -643 5657 5517 3 951 26 30 0 0 chr1 48038096 48038129 -149157303 + AT_rich Low_complexity Low_complexity 1 33 0 3 951 412 214 68 0 chr1 48040334 48040451 -149154981 + Lx9 LINE L1 7520 7644 0 3 951 503 312 106 9 chr1 48040511 48040712 -149154720 + B3A SINE B2 1 206 -10 3 951 186 71 0 0 chr1 48041064 48041092 -149154340 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 3 951 1210 141 114 7 chr1 48041110 48041382 -149154050 - Lx2 LINE L1 0 6997 6697 3 951 1017 60 0 0 chr1 48042787 48042920 -149152512 + (TC)n Simple_repeat Simple_repeat 2 134 0 3 951 450 0 0 0 chr1 48042920 48042969 -149152463 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 951 350 380 7 7 chr1 48042976 48043127 -149152305 - B3A SINE B2 -47 151 1 3 951 304 218 27 53 chr1 48044389 48044539 -149150893 + (TTTA)n Simple_repeat Simple_repeat 4 149 0 4 951 479 335 18 94 chr1 48044544 48044715 -149150717 - RSINE1 SINE B4 -6 159 2 4 951 22 0 0 0 chr1 48045310 48045332 -149150100 + AT_rich Low_complexity Low_complexity 1 22 0 4 951 207 324 0 0 chr1 48045812 48045883 -149149549 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 4 951 493 90 258 0 chr1 48046380 48046469 -149148963 - BC1_Mm scRNA scRNA -40 112 1 4 951 1106 148 0 41 chr1 48047558 48047755 -149147677 + B2_Mm2 SINE B2 7 195 0 4 951 28 29 0 0 chr1 48047799 48047834 -149147598 + AT_rich Low_complexity Low_complexity 1 35 0 4 951 290 365 8 17 chr1 48048509 48048626 -149146806 - B3A SINE B2 -82 116 1 4 951 231 366 82 41 chr1 48049043 48049237 -149146195 + MTD LTR MaLR 20 221 -198 4 951 326 321 9 0 chr1 48049301 48049407 -149146025 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 951 1676 16 0 0 chr1 48050027 48050216 -149145216 + B2_Mm1a SINE B2 1 189 -4 5 951 2873 263 79 9 chr1 48050595 48051390 -149144042 - Lx6 LINE L1 0 7460 6610 5 951 22 56 0 0 chr1 48052138 48052174 -149143258 + AT_rich Low_complexity Low_complexity 1 36 0 5 951 7920 181 34 23 chr1 48052432 48054102 -149141330 - MYSERV16_I-int LTR ERVK -177 2149 463 5 951 2779 200 38 11 chr1 48054109 48054656 -149140776 - RLTR20B1 LTR ERVK -1 562 1 5 951 1019 136 0 17 chr1 48054657 48054836 -149140596 - MYSERV16_I-int LTR ERVK -1859 467 292 5 951 5147 152 35 39 chr1 48054836 48055054 -149140378 + L1_Mur2 LINE L1 1836 2052 -3825 5 951 513 0 0 0 chr1 48055054 48055111 -149140321 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 951 5147 152 35 39 chr1 48055111 48055918 -149139514 + L1_Mur2 LINE L1 2053 2857 -3020 5 951 302 152 17 17 chr1 48055911 48055971 -149139461 - L1_Mur2 LINE L1 -1552 4325 4266 5 951 3052 156 92 81 chr1 48055995 48056392 -149139040 - L1_Mur2 LINE L1 -2422 3455 3050 5 951 1143 107 0 0 chr1 48056392 48056561 -149138871 + (TTC)n Simple_repeat Simple_repeat 2 170 0 5 951 3052 156 92 81 chr1 48056561 48056979 -149138453 - L1_Mur2 LINE L1 -2828 3049 2631 5 951 1977 181 91 5 chr1 48056979 48057407 -149138025 - L1_Mur2 LINE L1 -5943 1143 679 5 951 328 412 41 6 chr1 48057528 48057711 -149137721 + MTEb LTR MaLR 68 264 -115 5 951 529 172 76 5 chr1 48058153 48058270 -149137162 - ORR1D1 LTR MaLR 0 394 269 6 951 3075 62 0 5 chr1 48058502 48058905 -149136527 - L1_Mm LINE L1 -959 4924 4524 6 951 2658 60 0 0 chr1 48058905 48059241 -149136191 - L1Md_T LINE L1 -1 6581 6246 6 951 610 42 0 31 chr1 48059241 48059339 -149136093 + L1Md_F2 LINE L1 6476 6570 -12 6 951 258 105 0 0 chr1 48059381 48059419 -149136013 + (A)n Simple_repeat Simple_repeat 1 38 0 6 951 2896 283 90 32 chr1 48059426 48060553 -149134879 - Lx7 LINE L1 -284 7412 6221 6 951 846 34 25 0 chr1 48060566 48060684 -149134748 + (TC)n Simple_repeat Simple_repeat 1 121 0 6 951 1196 206 28 43 chr1 48060720 48061078 -149134354 - Lx7 LINE L1 -1787 5909 5524 6 951 667 273 6 17 chr1 48061084 48061259 -149134173 - ORR1D1 LTR MaLR -196 178 6 6 951 1101 101 0 0 chr1 48061287 48061466 -149133966 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 951 232 80 80 0 chr1 48061469 48061519 -149133913 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 6 951 22 0 0 0 chr1 48061646 48061668 -149133764 + AT_rich Low_complexity Low_complexity 1 22 0 6 951 29 47 0 0 chr1 48061765 48061808 -149133624 + AT_rich Low_complexity Low_complexity 1 43 0 7 951 282 115 0 0 chr1 48061924 48061976 -149133456 + (T)n Simple_repeat Simple_repeat 1 52 0 7 951 222 37 0 0 chr1 48063143 48063170 -149132262 + (TTA)n Simple_repeat Simple_repeat 3 29 0 7 951 302 115 16 0 chr1 48063170 48063231 -149132201 + (TAG)n Simple_repeat Simple_repeat 1 62 0 7 951 288 133 0 0 chr1 48064576 48064636 -149130796 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 951 200 227 0 0 chr1 48065898 48065942 -149129490 + T-rich Low_complexity Low_complexity 1 44 0 7 951 5335 123 24 0 chr1 48065950 48066772 -149128660 - Lx LINE L1 0 6654 5813 7 951 802 241 154 161 chr1 48066776 48066909 -149128523 - MT2A LTR ERVL -108 425 247 7 951 1419 143 67 4 chr1 48066909 48067162 -149128270 + Lx3A LINE L1 6710 6978 -3 7 951 802 241 154 161 chr1 48067162 48067230 -149128202 - MT2A LTR ERVL -287 246 179 7 951 446 33 17 0 chr1 48067230 48067290 -149128142 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 951 432 0 0 0 chr1 48067290 48067337 -149128095 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 951 802 241 149 154 chr1 48067337 48067559 -149127873 - MT2A LTR ERVL -355 178 3 7 951 228 67 0 0 chr1 48068343 48068373 -149127059 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 8 951 503 268 156 75 chr1 48068373 48068592 -149126840 - Lx5 LINE L1 -19 7031 6824 8 951 555 16 0 0 chr1 48068592 48068656 -149126776 + (CAGG)n Simple_repeat Simple_repeat 1 64 0 8 951 503 268 156 75 chr1 48068656 48068783 -149126649 - Lx5 LINE L1 -227 6823 6658 8 951 261 140 0 0 chr1 48068807 48068864 -149126568 + (T)n Simple_repeat Simple_repeat 1 57 0 8 951 299 185 0 0 chr1 48068962 48069016 -149126416 - Lx4B LINE L1 -568 6490 6437 8 951 5339 203 42 30 chr1 48071447 48072349 -149123083 + Lx6 LINE L1 4544 5448 -432 8 951 231 36 0 0 chr1 48072349 48072377 -149123055 + (CAA)n Simple_repeat Simple_repeat 3 30 0 8 951 5339 203 42 30 chr1 48072377 48072590 -149122842 + Lx6 LINE L1 5449 5663 -217 8 951 3941 130 14 6 chr1 48072590 48073216 -149122216 - Lx LINE L1 0 6654 6024 8 951 5339 279 132 31 chr1 48073216 48074570 -149120862 + Lx6 LINE L1 5664 7434 -26 8 951 21 0 0 0 chr1 48074570 48074591 -149120841 + AT_rich Low_complexity Low_complexity 1 21 0 8 951 1303 148 20 80 chr1 48074605 48074855 -149120577 + RLTR41 LTR ERV1 212 446 0 9 951 23 54 0 0 chr1 48075803 48075840 -149119592 + AT_rich Low_complexity Low_complexity 1 37 0 9 951 219 191 0 0 chr1 48076658 48076721 -149118711 + GA-rich Low_complexity Low_complexity 2 64 0 9 951 282 328 0 15 chr1 48077113 48077249 -149118183 + T-rich Low_complexity Low_complexity 1 134 0 9 951 611 316 161 35 chr1 48077337 48077852 -149117580 + Lx9 LINE L1 6840 7419 -225 9 951 31 44 0 0 chr1 48078006 48078051 -149117381 + AT_rich Low_complexity Low_complexity 1 45 0 9 951 371 332 50 63 chr1 48078095 48078494 -149116938 - L1_Rod LINE L1 -29 5818 5425 9 951 591 15 0 0 chr1 48078498 48078566 -149116866 + (TTA)n Simple_repeat Simple_repeat 3 70 0 9 951 449 48 32 0 chr1 48078574 48078636 -149116796 - B1_Mm SINE Alu -10 137 74 9 951 228 317 12 12 chr1 48078779 48078862 -149116570 + (CA)n Simple_repeat Simple_repeat 2 84 0 9 951 1598 311 41 32 chr1 48078915 48079718 -149115714 - Lx9 LINE L1 -467 7177 6368 1 951 1068 258 67 26 chr1 48079761 48080179 -149115253 - L1_Rod LINE L1 -348 5499 5065 1 951 387 41 0 0 chr1 48080332 48080381 -149115051 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 951 300 351 58 16 chr1 48080415 48080728 -149114704 - L1M2 LINE L1 -886 5257 4932 1 951 307 292 21 18 chr1 48080737 48080919 -149114513 + L1M3 LINE L1 3517 3730 -2416 1 951 674 219 107 4 chr1 48080917 48081151 -149114281 + Lx9 LINE L1 7372 7629 -15 1 951 390 392 53 29 chr1 48081168 48081412 -149114020 + MLT1A0 LTR MaLR 30 279 -86 1 951 7102 56 0 0 chr1 48081497 48082383 -149113049 + L1Md_F2 LINE L1 4701 5586 -297 1 951 7910 44 13 7 chr1 48082383 48083373 -149112059 + L1Md_F2 LINE L1 5587 6582 0 1 951 769 293 89 16 chr1 48083387 48083825 -149111607 + L1M3 LINE L1 3768 4256 -1884 1 951 516 84 14 0 chr1 48084085 48084156 -149111276 - B2_Mm1t SINE B2 -120 73 2 1 951 336 200 0 0 chr1 48084160 48084230 -149111202 - L1_Mur2 LINE L1 -426 5451 5382 1 951 3414 45 20 7 chr1 48084230 48084694 -149110738 - L1Md_F3 LINE L1 0 6584 6134 1 951 694 11 0 32 chr1 48084723 48084816 -149110616 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 1 951 1131 114 0 0 chr1 48084816 48084991 -149110441 + (TCC)n Simple_repeat Simple_repeat 3 177 0 1 951 30 45 0 0 chr1 48085498 48085542 -149109890 + AT_rich Low_complexity Low_complexity 1 44 0 1 951 1246 184 87 90 chr1 48085561 48085896 -149109536 - Lx2B LINE L1 -5 6995 6662 1 951 21 71 0 0 chr1 48085995 48086037 -149109395 + AT_rich Low_complexity Low_complexity 1 42 0 1 951 351 136 0 0 chr1 48087377 48087436 -149107996 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 1 951 258 366 42 37 chr1 48088763 48088953 -149106479 - LTR41 LTR ERVL -559 209 19 1 951 423 0 0 0 chr1 48089196 48089243 -149106189 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 951 5153 118 61 0 chr1 48089876 48090663 -149104769 - Lx LINE L1 -7 6647 5813 1 951 511 231 57 0 chr1 48090666 48090796 -149104636 - MT2B LTR ERVL -94 507 399 1 951 1100 125 15 11 chr1 48090799 48090996 -149104436 + Lx3A LINE L1 6710 6909 -100 1 951 225 303 38 57 chr1 48091331 48091436 -149103996 + L1MA9 LINE L1 5942 6044 -268 1 951 1506 215 17 45 chr1 48091852 48092208 -149103224 - MTC LTR MaLR -8 413 68 1 951 459 0 0 0 chr1 48092753 48092804 -149102628 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 951 225 0 0 0 chr1 48093371 48093396 -149102036 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 951 523 208 0 0 chr1 48093399 48093519 -149101913 + Lx9 LINE L1 7513 7632 -12 1 951 31 0 0 0 chr1 48093519 48093550 -149101882 + AT_rich Low_complexity Low_complexity 1 31 0 1 951 717 276 5 32 chr1 48093869 48094086 -149101346 - Lx5 LINE L1 -317 6733 6523 1 951 527 134 19 39 chr1 48094094 48094249 -149101183 + (TTTA)n Simple_repeat Simple_repeat 1 152 0 1 951 2747 236 68 22 chr1 48094250 48095209 -149100223 - Lx5 LINE L1 -710 6750 5505 1 951 2112 253 29 9 chr1 48095194 48095847 -149099585 - L1_Mur3 LINE L1 -2578 3299 2634 1 951 2602 218 71 63 chr1 48095825 48095991 -149099441 - L1_Mur3 LINE L1 -3661 2216 2061 1 951 234 81 0 0 chr1 48095991 48096028 -149099404 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 951 2602 218 71 63 chr1 48096028 48096806 -149098626 - L1_Mur3 LINE L1 -3817 2060 1265 1 951 1704 179 16 115 chr1 48096806 48097190 -149098242 + ORR1B1 LTR MaLR 41 386 -8 1 951 1041 263 18 43 chr1 48097195 48097592 -149097840 - L1_Mur3 LINE L1 -6454 1274 888 1 951 1052 329 128 5 chr1 48097803 48098225 -149097207 - Lx6 LINE L1 -95 7365 6892 1 951 531 0 0 0 chr1 48098225 48098284 -149097148 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 951 315 0 0 0 chr1 48098284 48098318 -149097114 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 951 198 0 0 0 chr1 48098398 48098420 -149097012 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 951 569 318 57 30 chr1 48098967 48099265 -149096167 - Lx9 LINE L1 -717 6927 6622 1 951 249 253 86 74 chr1 48099289 48099451 -149095981 + Lx9 LINE L1 7299 7462 -182 1 951 303 167 0 0 chr1 48099456 48099522 -149095910 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 951 441 0 0 0 chr1 48099522 48099571 -149095861 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 951 904 241 27 54 chr1 48100318 48100665 -149094767 + L1VL4 LINE L1 801 1130 -5852 1 118 35984 33 1 8 chr1 48100656 48105643 -149089789 + L1Md_T LINE L1 643 5586 -297 1 952 8206 42 1 0 chr1 48105644 48106638 -149088794 + L1Md_T LINE L1 5588 6582 0 1 952 324 203 0 0 chr1 48106638 48106712 -149088720 + L1VL2 LINE L1 878 951 -5384 1 952 7121 187 40 3 chr1 48106709 48108204 -149087228 + MusHAL1 LINE L1 102 1651 -1061 1 952 2539 214 32 0 chr1 48108202 48108729 -149086703 + Lx3C LINE L1 5816 6359 -617 1 952 1719 96 0 0 chr1 48108729 48108959 -149086473 - L1_Mur1 LINE L1 -96 5790 5561 1 952 4870 99 7 14 chr1 48108954 48109663 -149085769 + Lx3_Mus LINE L1 6266 6969 -40 1 952 2679 193 59 4 chr1 48109671 48110233 -149085199 + Lx3C LINE L1 6382 6974 -2 1 952 903 112 94 6 chr1 48110768 48110938 -149084494 + Lx3A LINE L1 6796 6980 -1 1 952 21 0 0 0 chr1 48110940 48110961 -149084471 + AT_rich Low_complexity Low_complexity 1 21 0 1 952 1198 279 9 0 chr1 48110961 48111302 -149084130 + L1_Mur2 LINE L1 5007 5350 -527 1 952 378 143 0 14 chr1 48111302 48111373 -149084059 + Lx3A LINE L1 6906 6975 -6 1 952 237 333 74 0 chr1 48112611 48112719 -149082713 - MLT1E LTR MaLR -417 236 121 1 952 534 319 58 12 chr1 48112949 48113190 -149082242 + Lx8 LINE L1 6703 6954 -519 1 952 418 331 92 48 chr1 48113384 48113627 -149081805 + Lx8 LINE L1 6991 7254 -219 1 952 231 203 0 0 chr1 48116867 48116931 -149078501 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 952 296 42 62 0 chr1 48116957 48117005 -149078427 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 1 952 864 298 171 37 chr1 48117892 48118373 -149077059 - RMER20B LTR ERVK -55 572 28 1 952 22 35 0 0 chr1 48118414 48118443 -149076989 + AT_rich Low_complexity Low_complexity 1 29 0 1 952 668 66 33 0 chr1 48118478 48118569 -149076863 + RMER17D LTR ERVK 1 94 -795 1 952 2811 118 11 9 chr1 48118570 48119014 -149076418 + RMER17D LTR ERVK 443 887 -2 1 952 399 279 47 56 chr1 48119142 48119374 -149076058 - L1MD3 LINE L1 -285 7710 7481 1 952 1007 52 73 7 chr1 48119411 48119548 -149075884 - B1_Mm SINE Alu 0 147 2 1 952 268 43 43 0 chr1 48119587 48119633 -149075799 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 1 952 16251 78 12 8 chr1 48119748 48122703 -149072729 - L1Md_F2 LINE L1 -6 6576 3609 1 952 4450 156 55 36 chr1 48122691 48123878 -149071554 - L1Md_F2 LINE L1 -4463 1420 217 1 952 264 130 0 0 chr1 48123985 48124031 -149071401 + (ATG)n Simple_repeat Simple_repeat 1 46 0 1 952 281 286 0 109 chr1 48124073 48124320 -149071112 - L1M2 LINE L1 -2414 3729 3510 1 952 275 312 223 39 chr1 48124345 48124558 -149070874 - L1_Rod LINE L1 -2425 3422 3183 1 952 195 69 0 0 chr1 48124558 48124587 -149070845 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 1 952 275 312 223 39 chr1 48124587 48125040 -149070392 - L1_Rod LINE L1 -2665 3182 2633 1 952 298 214 81 49 chr1 48125151 48125274 -149070158 - Lx9 LINE L1 -11 7633 7507 1 952 2447 279 62 20 chr1 48125622 48126430 -149069002 - Lx6 LINE L1 0 7460 6619 1 952 3203 193 36 37 chr1 48126769 48127490 -149067942 + RMER6D LTR ERVK 1 720 0 1 952 1024 271 48 59 chr1 48127628 48127985 -149067447 - Lx9 LINE L1 -684 6960 6608 1 952 1418 241 153 19 chr1 48127976 48128033 -149067399 + Lx9 LINE L1 7089 7143 -501 1 952 1115 242 144 57 chr1 48128033 48128492 -149066940 + RLTR19 LTR ERVK 1 499 0 1 952 1418 241 153 19 chr1 48128492 48128917 -149066515 + Lx9 LINE L1 7144 7636 -8 1 952 619 234 58 12 chr1 48128970 48129143 -149066289 + RMER6C LTR ERVK 418 598 -92 1 952 649 0 25 0 chr1 48129157 48129238 -149066194 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1 952 2034 206 102 67 chr1 48129354 48129952 -149065480 - RMER6C LTR ERVK 0 690 72 1 952 1943 199 145 0 chr1 48129951 48130453 -149064979 - RMER6C LTR ERVK -5 685 111 1 952 329 321 105 81 chr1 48130486 48131106 -149064326 + L1ME3B LINE L1 5318 5952 -288 1 952 24 0 0 0 chr1 48131189 48131213 -149064219 + AT_rich Low_complexity Low_complexity 1 24 0 1 952 23 33 0 0 chr1 48131255 48131285 -149064147 + AT_rich Low_complexity Low_complexity 1 30 0 1 952 245 124 40 30 chr1 48131403 48131503 -149063929 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 952 6676 28 2 0 chr1 48131665 48132452 -149062980 + L1Md_A LINE L1 5794 6582 0 1 952 22 0 0 0 chr1 48133579 48133601 -149061831 + AT_rich Low_complexity Low_complexity 1 22 0 1 952 216 255 20 0 chr1 48133802 48133853 -149061579 + CT-rich Low_complexity Low_complexity 4 55 0 1 952 786 320 37 24 chr1 48134188 48134562 -149060870 + MTEa LTR MaLR 1 379 0 1 952 444 37 0 0 chr1 48135550 48135604 -149059828 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1 952 24 0 0 0 chr1 48136798 48136822 -149058610 + AT_rich Low_complexity Low_complexity 1 24 0 1 952 944 298 39 41 chr1 48136859 48137223 -149058209 - Lx6 LINE L1 0 7460 7098 1 952 407 161 0 11 chr1 48137221 48137309 -149058123 + L1_Mur3 LINE L1 3138 3224 -2656 1 952 31508 90 2 10 chr1 48137309 48142315 -149053117 + L1Md_F2 LINE L1 625 5585 -298 1 952 7504 70 3 11 chr1 48142316 48143307 -149052125 + L1Md_F2 LINE L1 5587 6569 -13 1 952 1807 221 25 119 chr1 48143330 48143736 -149051696 + L1_Mur3 LINE L1 3217 3608 -2272 1 952 1085 83 7 0 chr1 48143736 48143881 -149051551 + B1_Mus2 SINE Alu 1 146 -1 1 952 1807 221 25 119 chr1 48143881 48144248 -149051184 + L1_Mur3 LINE L1 3609 3917 -1963 1 952 289 123 18 0 chr1 48144691 48144748 -149050684 + L1Md_F2 LINE L1 6521 6578 -4 1 952 1019 353 78 27 chr1 48144774 48145543 -149049889 - Lx8 LINE L1 -182 7291 6484 1 952 2470 16 4 230 chr1 48145844 48146318 -149049114 + IAPLTR1_Mm LTR ERVK 1 367 0 1 952 7272 94 111 16 chr1 48146318 48147511 -149047921 + IAPEz-int LTR ERVK 8 1313 -5168 1 952 28716 22 1 1 chr1 48147510 48150778 -149044654 + IAPEz-int LTR ERVK 3210 6479 -2 1 952 2874 23 42 3 chr1 48150780 48151133 -149044299 + IAPLTR1_Mm LTR ERVK 1 367 0 1 952 937 66 0 8 chr1 48151663 48151785 -149043647 + MTB_Mm LTR MaLR 1 121 -286 1 952 769 316 81 37 chr1 48151816 48152247 -149043185 + RLTR17 LTR ERVK 116 565 -127 1 952 1542 170 40 35 chr1 48152319 48152587 -149042845 + MTB_Mm LTR MaLR 69 348 -59 1 952 189 0 0 0 chr1 48152587 48152608 -149042824 + (C)n Simple_repeat Simple_repeat 1 21 0 1 952 1542 158 31 21 chr1 48152608 48152668 -149042764 + MTB_Mm LTR MaLR 349 407 0 1 952 315 390 94 15 chr1 48152714 48152917 -149042515 + B4A SINE B4 74 292 0 1 952 22 0 0 0 chr1 48153794 48153816 -149041616 + AT_rich Low_complexity Low_complexity 1 22 0 1 952 2057 129 115 6 chr1 48154133 48154207 -149041225 - L1_Mus3 LINE L1 -2 6636 6563 1 952 216 0 0 0 chr1 48154207 48154231 -149041201 + (CCCCCT)n Simple_repeat Simple_repeat 6 29 0 2 952 2057 129 115 6 chr1 48154231 48154521 -149040911 - L1_Mus3 LINE L1 -76 6562 6232 1 952 804 303 92 87 chr1 48154559 48154762 -149040670 + MTD LTR MaLR 1 206 -213 2 952 1047 92 14 0 chr1 48154762 48154904 -149040528 + B1_Mus1 SINE Alu 5 148 0 2 952 804 303 92 87 chr1 48154904 48155115 -149040317 + MTD LTR MaLR 207 417 -2 2 952 320 306 81 0 chr1 48155152 48155276 -149040156 + MTC-int LTR MaLR 38 171 -1087 2 952 351 356 62 28 chr1 48155308 48155487 -149039945 + B3 SINE B2 32 216 0 2 952 418 296 47 144 chr1 48155678 48156019 -149039413 + MTC-int LTR MaLR 980 1215 -748 2 952 1245 229 42 13 chr1 48156026 48156086 -149039346 - MT2B LTR ERVL 0 601 541 2 952 355 38 19 19 chr1 48156086 48156140 -149039292 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 952 1245 263 82 23 chr1 48156140 48156560 -149038872 - MT2B LTR ERVL -61 540 4 2 952 787 322 88 44 chr1 48156560 48157007 -149038425 + MTC-int LTR MaLR 727 1193 -65 2 952 282 320 65 74 chr1 48157254 48157470 -149037962 + RMER2 LTR ERV1 349 562 -5 2 952 13301 176 38 32 chr1 48157499 48161136 -149034296 + L1VL2 LINE L1 310 3957 -1929 2 952 702 178 0 0 chr1 48161134 48161263 -149034169 - L1_Mur1 LINE L1 -831 5055 4927 2 952 2249 137 13 72 chr1 48161293 48161820 -149033612 + RMER17A LTR ERVK 256 751 0 2 952 603 140 17 34 chr1 48161820 48161938 -149033494 + Lx2 LINE L1 6882 6997 0 2 952 291 361 0 10 chr1 48162080 48162178 -149033254 + MTD LTR MaLR 103 199 -220 2 952 459 0 0 0 chr1 48162203 48162254 -149033178 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 952 8942 142 9 2 chr1 48162260 48163769 -149031663 - L1_Mm LINE L1 -581 5302 3783 2 952 6848 100 45 5 chr1 48163767 48164863 -149030569 + L1_Mus3 LINE L1 5468 6633 -5 2 952 387 0 0 0 chr1 48165654 48165697 -149029735 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 952 2277 263 94 10 chr1 48166489 48167181 -149028251 + Lx9 LINE L1 6353 7102 -542 2 952 294 350 55 28 chr1 48167176 48167239 -149028193 - Lx7 LINE L1 -891 6582 6512 2 952 1133 75 0 13 chr1 48167239 48167388 -149028044 - B1_Mus1 SINE Alu -1 147 1 2 952 299 308 49 38 chr1 48167388 48167650 -149027782 - Lx7 LINE L1 -962 6511 6248 2 952 1142 217 229 5 chr1 48167650 48168048 -149027384 - RMER6C LTR ERVK 0 690 204 2 952 520 236 50 82 chr1 48168290 48168572 -149026860 + Lx4B LINE L1 892 1164 -5820 2 952 11808 62 2 2 chr1 48168570 48170140 -149025292 - L1Md_F2 LINE L1 -1521 4362 2793 2 952 9654 53 0 7 chr1 48170120 48171343 -149024089 + L1Md_F2 LINE L1 4373 5586 -297 2 952 7838 58 2 1 chr1 48171343 48172338 -149023094 + L1Md_F2 LINE L1 5587 6582 0 2 952 20070 193 37 17 chr1 48172340 48172928 -149022504 + Lx4B LINE L1 1152 1751 -4126 2 952 518 0 16 0 chr1 48172928 48172990 -149022442 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 952 20070 190 40 18 chr1 48172990 48173496 -149021936 + Lx4B LINE L1 1752 2268 -3609 2 952 357 43 0 0 chr1 48173496 48173543 -149021889 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 952 20070 195 49 19 chr1 48173543 48178088 -149017344 + Lx4B LINE L1 2269 6978 -80 2 952 233 314 33 25 chr1 48178449 48178570 -149016862 + L1MC4 LINE L1 7107 7228 -814 2 952 16616 67 4 2 chr1 48179010 48181214 -149014218 + L1Md_F3 LINE L1 3378 5585 -298 2 952 8052 44 6 0 chr1 48181215 48182205 -149013227 + L1Md_F3 LINE L1 5587 6582 -2 2 952 369 280 0 0 chr1 48182470 48182545 -149012887 - B3 SINE B2 -141 75 1 2 952 320 169 0 13 chr1 48182864 48182942 -149012490 + GA-rich Low_complexity Low_complexity 3 79 0 2 952 485 328 63 16 chr1 48183219 48183712 -149011720 + L1M4 LINE L1 1020 1535 -5007 2 952 22 0 0 0 chr1 48184113 48184135 -149011297 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 581 215 22 37 chr1 48184424 48184559 -149010873 + B1_Mur3 SINE Alu 10 142 -7 2 952 212 0 0 35 chr1 48184561 48184590 -149010842 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 2 952 21 0 0 0 chr1 48184795 48184816 -149010616 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 534 133 0 0 chr1 48185312 48185402 -149010030 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 952 682 293 37 86 chr1 48187015 48187366 -149008066 + RLTR11A2 LTR ERVK 3 336 -191 2 952 273 349 31 62 chr1 48187337 48187499 -149007933 + BGLII_B LTR ERVK 267 423 -18 2 952 4387 47 7 2 chr1 48187769 48188308 -149007124 - L1Md_F2 LINE L1 -25 6557 6016 2 952 25 31 0 0 chr1 48188541 48188573 -149006859 + AT_rich Low_complexity Low_complexity 1 32 0 2 952 1972 221 41 0 chr1 48188689 48189128 -149006304 + ORR1A2-int LTR MaLR 736 1192 -317 2 952 572 133 6 4 chr1 48189132 48189238 -149006194 + ORR1A2 LTR MaLR 1 107 -239 2 952 1837 73 4 0 chr1 48189262 48189508 -149005924 + L1Md_F2 LINE L1 6324 6570 -12 2 952 2416 272 91 28 chr1 48189509 48190353 -149005079 - Lx7 LINE L1 -437 7259 6363 2 952 17322 185 11 44 chr1 48190354 48190864 -149004568 + L1_Mur1 LINE L1 1650 2163 -3723 2 952 3475 44 9 7 chr1 48190864 48191301 -149004131 + L1Md_F2 LINE L1 6145 6582 0 2 952 17322 185 11 44 chr1 48191301 48192198 -149003234 + L1_Mur1 LINE L1 2164 3055 -2831 2 952 1103 117 0 11 chr1 48192198 48192379 -149003053 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 952 17322 185 11 44 chr1 48192379 48194818 -149000614 + L1_Mur1 LINE L1 3056 5370 -516 2 952 407 319 73 38 chr1 48195056 48195317 -149000115 + L1M4 LINE L1 2265 2534 -3612 2 952 21 0 0 0 chr1 48195573 48195594 -148999838 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 7861 158 61 14 chr1 48195945 48197396 -148998036 - L1_Mur2 LINE L1 -853 5024 3484 2 952 438 79 0 0 chr1 48197396 48197459 -148997973 + (TTCTG)n Simple_repeat Simple_repeat 4 66 0 2 952 7861 158 61 14 chr1 48197459 48197540 -148997892 - L1_Mur2 LINE L1 -2394 3483 3422 2 952 7653 144 75 16 chr1 48197679 48199315 -148996117 + Lx2A1 LINE L1 5288 7006 -2 2 952 1075 316 14 0 chr1 48199878 48200163 -148995269 + MTD LTR MaLR 2 290 -129 2 952 21 57 0 0 chr1 48201843 48201878 -148993554 + AT_rich Low_complexity Low_complexity 1 35 0 2 952 189 175 0 0 chr1 48202325 48202365 -148993067 + CT-rich Low_complexity Low_complexity 1 40 0 2 952 189 0 0 0 chr1 48202402 48202423 -148993009 + (A)n Simple_repeat Simple_repeat 1 21 0 2 952 13577 117 21 14 chr1 48202874 48203051 -148992381 + Lx3B LINE L1 3645 3817 -2069 2 952 1143 75 0 0 chr1 48203051 48203197 -148992235 + B1_Mus2 SINE Alu 2 147 0 2 952 13577 117 21 14 chr1 48203197 48204025 -148991407 + Lx3B LINE L1 3818 4638 -1248 2 952 342 0 0 0 chr1 48204025 48204063 -148991369 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 952 13577 118 27 13 chr1 48204063 48205627 -148989805 + Lx3B LINE L1 4639 6234 -739 2 952 3030 78 0 8 chr1 48205628 48206027 -148989405 - MTA_Mm LTR MaLR 0 396 1 2 952 7430 84 8 69 chr1 48206027 48207197 -148988235 - MTA_Mm-int LTR MaLR 0 1098 1 2 952 2507 83 24 85 chr1 48207197 48207398 -148988034 - MTA_Mm LTR MaLR 0 396 227 2 952 4076 56 0 21 chr1 48207398 48207927 -148987505 - L1Md_F2 LINE L1 -2 6580 6063 2 952 2507 83 24 85 chr1 48207927 48208147 -148987285 - MTA_Mm LTR MaLR -170 226 1 2 952 724 149 0 0 chr1 48208147 48208254 -148987178 + Lx3B LINE L1 6235 6341 -632 2 952 350 277 75 68 chr1 48208262 48208409 -148987023 - RLTR9E LTR ERVK -26 383 236 2 952 1364 126 0 5 chr1 48208565 48208773 -148986659 + Lx3A LINE L1 6330 6536 -445 2 952 1042 144 99 5 chr1 48208774 48208976 -148986456 + Lx3A LINE L1 6754 6974 -7 2 952 226 194 30 0 chr1 48210740 48210807 -148984625 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 952 425 308 14 7 chr1 48211376 48211523 -148983909 - B1_Mus1 SINE Alu 0 148 1 2 952 220 250 0 18 chr1 48211914 48211971 -148983461 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2 952 758 31 10 0 chr1 48211981 48212078 -148983354 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 2 952 1053 122 0 0 chr1 48212349 48212496 -148982936 + B1_Mus2 SINE Alu 1 147 0 2 952 313 53 89 38 chr1 48212510 48212589 -148982843 + A-rich Low_complexity Low_complexity 3 85 0 2 952 643 200 0 25 chr1 48212832 48212950 -148982482 + B1_Mur4 SINE Alu 15 129 -21 2 952 571 241 0 29 chr1 48213143 48213280 -148982152 - RMER19C LTR ERVK -3 608 476 2 952 982 67 0 0 chr1 48213280 48213399 -148982033 + L1Md_F2 LINE L1 5467 5585 -298 2 952 7476 66 10 19 chr1 48213400 48214428 -148981004 + L1Md_F2 LINE L1 5587 6582 0 2 952 1185 194 129 184 chr1 48214430 48214941 -148980491 - RMER19C LTR ERVK -128 483 1 2 952 4267 117 62 13 chr1 48216513 48217187 -148978245 + Lx LINE L1 5591 6297 -357 2 952 966 100 0 0 chr1 48217199 48217339 -148978093 + (GGAGAA)n Simple_repeat Simple_repeat 3 142 0 2 952 323 340 87 68 chr1 48218645 48218897 -148976535 - MTE2a LTR MaLR -56 323 67 2 952 50 42 0 0 chr1 48219056 48219127 -148976305 + AT_rich Low_complexity Low_complexity 1 71 0 2 952 21 0 0 0 chr1 48219612 48219633 -148975799 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 1039 111 7 0 chr1 48219691 48219835 -148975597 - B1_Mus1 SINE Alu -3 145 1 2 952 1469 175 8 0 chr1 48220649 48220912 -148974520 - L1_Mus4 LINE L1 -870 5013 4749 2 952 7239 130 14 1 chr1 48220913 48222517 -148972915 + L1_Mus4 LINE L1 5006 6633 -3 2 952 22 0 0 0 chr1 48222667 48222689 -148972743 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 216 354 36 24 chr1 48222701 48222785 -148972647 - PB1D10 SINE Alu -23 94 10 2 952 26 74 0 0 chr1 48222883 48222937 -148972495 + AT_rich Low_complexity Low_complexity 1 54 0 2 952 2161 97 157 3 chr1 48223451 48223834 -148971598 - RLTR47_MM LTR ERV1 -90 442 1 2 952 488 337 8 12 chr1 48223942 48224197 -148971235 - RLTR6-int LTR ERV1 -78 7700 7447 2 952 1704 279 18 25 chr1 48225010 48225498 -148969934 - MuRRS4-int LTR ERV1 -1043 4020 3536 2 952 271 330 147 33 chr1 48225853 48226126 -148969306 - RLTR4_MM-int LTR ERV1 -3170 4431 4128 2 952 723 319 49 39 chr1 48226364 48227186 -148968246 - MuRRS4-int LTR ERV1 -5191 2415 1555 2 952 228 162 101 101 chr1 48227318 48227407 -148968025 + LTRIS5 LTR ERV1 328 416 -31 2 952 496 293 75 53 chr1 48227824 48228175 -148967257 - MuRRS4-int LTR ERV1 -6798 808 444 2 952 585 167 180 0 chr1 48228567 48228717 -148966715 - RLTR47_MM LTR ERV1 0 532 356 2 952 264 343 74 0 chr1 48228955 48229063 -148966369 + MamRep605 Unknown Unknown 696 811 -65 2 952 405 0 0 0 chr1 48229154 48229199 -148966233 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 952 881 171 6 0 chr1 48229555 48229725 -148965707 + GA-rich Low_complexity Low_complexity 3 173 0 2 952 303 49 0 0 chr1 48229729 48229770 -148965662 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 2 952 2750 106 10 2 chr1 48230890 48231287 -148964145 + MTB LTR MaLR 1 400 0 2 952 576 0 0 0 chr1 48231781 48231845 -148963587 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 952 28 48 0 0 chr1 48232042 48232084 -148963348 + AT_rich Low_complexity Low_complexity 1 42 0 2 952 3400 123 38 0 chr1 48232549 48233070 -148962362 - Lx3_Mus LINE L1 -10 6999 6459 2 952 1823 47 8 4 chr1 48233129 48233364 -148962068 - L1Md_F3 LINE L1 0 6584 6349 2 952 207 196 35 149 chr1 48233424 48233538 -148961894 + L4 LINE RTE 334 434 -1595 2 952 225 171 28 14 chr1 48233829 48233900 -148961532 + (TTATA)n Simple_repeat Simple_repeat 4 75 0 2 953 357 109 0 0 chr1 48234571 48234626 -148960806 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 953 249 33 0 0 chr1 48234627 48234657 -148960775 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 953 633 273 39 39 chr1 48235141 48235347 -148960085 + RLTR18 LTR ERVK 1 206 -410 2 953 584 328 22 57 chr1 48235458 48235825 -148959607 + RLTR18B LTR ERVK 144 584 -32 3 953 270 0 0 0 chr1 48235825 48235855 -148959577 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 953 326 346 29 96 chr1 48235855 48235878 -148959554 + RLTR18B LTR ERVK 585 606 -10 3 953 212 333 0 53 chr1 48236339 48236376 -148959056 - BC1_Mm scRNA scRNA -48 104 15 3 953 218 295 82 0 chr1 48236367 48236428 -148959004 - ID SINE ID -137 87 22 3 953 228 293 0 0 chr1 48236376 48236434 -148958998 - tRNA-Ala-GCY_ tRNA tRNA -9 66 9 3 953 19378 63 0 2 chr1 48236585 48239793 -148955639 - L1Md_F2 LINE L1 0 6582 3380 3 953 2925 267 170 12 chr1 48240274 48241394 -148954038 + Lx7 LINE L1 6400 7696 0 3 953 24 0 0 0 chr1 48241874 48241898 -148953534 + AT_rich Low_complexity Low_complexity 1 24 0 3 953 26 50 0 0 chr1 48242137 48242177 -148953255 + AT_rich Low_complexity Low_complexity 1 40 0 3 953 837 222 33 6 chr1 48242295 48242476 -148952956 + B2_Mm2 SINE B2 2 187 -8 3 953 219 336 14 14 chr1 48243486 48243628 -148951804 + (TATG)n Simple_repeat Simple_repeat 1 142 0 3 953 868 323 25 34 chr1 48244160 48244370 -148951062 - MTEb LTR MaLR -55 324 116 3 953 3106 61 5 8 chr1 48244370 48244767 -148950665 - MTA_Mm LTR MaLR 0 396 1 3 953 868 323 25 34 chr1 48244767 48244883 -148950549 - MTEb LTR MaLR -264 115 1 3 953 1201 113 16 21 chr1 48244954 48245143 -148950289 + B2_Mm2 SINE B2 1 188 -7 3 953 430 17 17 17 chr1 48245603 48245663 -148949769 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 953 608 248 30 0 chr1 48245791 48245924 -148949508 + B1_Mus1 SINE Alu 3 139 -9 3 953 330 225 0 0 chr1 48245934 48246014 -148949418 + GA-rich Low_complexity Low_complexity 4 83 0 3 953 374 276 19 6 chr1 48246170 48246285 -148949147 + B3A SINE B2 3 121 -74 3 953 193 238 24 0 chr1 48246766 48246808 -148948624 + MIRm SINE MIR 69 111 -165 3 953 689 339 121 9 chr1 48247725 48248064 -148947368 + MTEb LTR MaLR 3 379 0 3 953 517 345 0 0 chr1 48248336 48248478 -148946954 - B1_Mur1 SINE Alu -7 142 1 3 953 34209 79 3 5 chr1 48249173 48255351 -148940081 - L1Md_F2 LINE L1 -3 6582 318 3 953 21 57 0 0 chr1 48255376 48255411 -148940021 + AT_rich Low_complexity Low_complexity 1 35 0 3 953 279 289 41 31 chr1 48255683 48255789 -148939643 + PB1D7 SINE Alu 12 117 -3 3 953 839 311 115 8 chr1 48256931 48257361 -148938071 + Lx7 LINE L1 6766 7257 -216 3 953 22 0 0 0 chr1 48257868 48257890 -148937542 + AT_rich Low_complexity Low_complexity 1 22 0 3 953 8168 126 16 35 chr1 48257891 48259484 -148935948 - Lx3A LINE L1 -5 6976 5426 3 953 7044 14 0 0 chr1 48259484 48260283 -148935149 + L1Md_A LINE L1 5784 6582 0 3 953 4001 112 12 3 chr1 48260283 48260435 -148934997 - Lx3A LINE L1 -461 5425 5273 3 953 21 82 0 0 chr1 48260452 48260501 -148934931 + AT_rich Low_complexity Low_complexity 1 49 0 3 953 25 51 0 0 chr1 48260774 48260813 -148934619 + AT_rich Low_complexity Low_complexity 1 39 0 3 953 292 291 35 0 chr1 48260825 48260966 -148934466 + L1MA9 LINE L1 6022 6167 -145 3 953 186 43 0 0 chr1 48261071 48261094 -148934338 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 953 21 0 0 0 chr1 48261365 48261386 -148934046 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 22 35 0 0 chr1 48261416 48261445 -148933987 + AT_rich Low_complexity Low_complexity 1 29 0 3 953 26 50 0 0 chr1 48262395 48262435 -148932997 + AT_rich Low_complexity Low_complexity 1 40 0 3 953 6232 105 29 0 chr1 48262909 48263812 -148931620 + L1_Mus4 LINE L1 5707 6635 -1 3 953 459 316 17 0 chr1 48263979 48264096 -148931336 - RSINE1 SINE B4 -24 141 23 3 953 848 349 59 18 chr1 48264609 48265166 -148930266 - Lx8 LINE L1 -482 6991 6412 3 953 202 0 59 29 chr1 48265262 48265296 -148930136 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 953 2081 159 3 0 chr1 48265358 48265684 -148929748 - ORR1A2 LTR MaLR 0 327 1 3 953 499 310 0 75 chr1 48265808 48265996 -148929436 + B3A SINE B2 9 182 -16 3 953 297 164 0 0 chr1 48265999 48266072 -148929360 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 953 30201 131 24 8 chr1 48266203 48270008 -148925424 + L1_Mus1 LINE L1 262 4123 -1760 3 953 531 0 0 0 chr1 48270008 48270067 -148925365 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 3 953 30201 106 8 5 chr1 48270067 48272494 -148922938 + L1_Mus1 LINE L1 4124 6563 -4 3 953 480 35 0 0 chr1 48272498 48272556 -148922876 + (CAA)n Simple_repeat Simple_repeat 2 59 0 3 953 194 0 39 0 chr1 48272579 48272605 -148922827 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 953 225 0 0 0 chr1 48273199 48273224 -148922208 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 953 183 71 71 0 chr1 48273378 48273420 -148922012 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 953 214 146 0 68 chr1 48273432 48273520 -148921912 + A-rich Low_complexity Low_complexity 1 82 0 3 953 879 237 78 50 chr1 48273818 48273937 -148921495 + L1_Mur3 LINE L1 834 1008 -6720 3 953 495 129 0 31 chr1 48273937 48274033 -148921399 + Lx LINE L1 6562 6654 0 3 953 1814 216 107 31 chr1 48274033 48274783 -148920649 + L1_Mur3 LINE L1 1009 1813 -4064 3 953 228 67 0 0 chr1 48274785 48274815 -148920617 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3 953 6713 174 16 39 chr1 48274819 48276501 -148918931 - Lx2B LINE L1 -17 6983 5354 3 953 186 71 0 0 chr1 48276597 48276625 -148918807 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 953 1154 112 10 34 chr1 48276765 48276969 -148918463 - L1_Mus3 LINE L1 -12 6626 6428 3 953 909 309 22 4 chr1 48276987 48277257 -148918175 - Lx6 LINE L1 -4 7456 7182 3 953 2811 264 93 28 chr1 48277274 48278163 -148917269 - Lx6 LINE L1 -739 6721 5775 3 953 6628 188 62 29 chr1 48278146 48280697 -148914735 - L1_Mus3 LINE L1 0 6638 3981 3 953 3573 29 0 0 chr1 48280697 48281118 -148914314 - L1Md_T LINE L1 0 6582 6162 3 953 6628 215 77 32 chr1 48281118 48281198 -148914234 - L1_Mus3 LINE L1 -1900 3980 3902 3 953 288 77 0 0 chr1 48281436 48281475 -148913957 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 953 342 45 0 0 chr1 48281478 48281522 -148913910 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 953 697 153 110 24 chr1 48281606 48281733 -148913699 - B1_Mm SINE Alu -1 146 9 3 953 25 31 0 0 chr1 48281814 48281846 -148913586 + AT_rich Low_complexity Low_complexity 1 32 0 3 953 50 65 0 0 chr1 48281961 48282053 -148913379 + AT_rich Low_complexity Low_complexity 1 92 0 3 953 37903 32 0 0 chr1 48282055 48288733 -148906699 - L1Md_T LINE L1 0 6585 1 3 953 735 313 128 3 chr1 48288956 48289283 -148906149 + Lx8 LINE L1 6304 6671 -802 3 953 288 232 161 0 chr1 48289392 48289504 -148905928 + L1M3 LINE L1 4395 4524 -1616 3 953 888 249 18 81 chr1 48289934 48290218 -148905214 - Lx6 LINE L1 -16 7444 7179 3 953 22 0 0 0 chr1 48291587 48291609 -148903823 + AT_rich Low_complexity Low_complexity 1 22 0 3 953 1394 210 69 135 chr1 48291797 48292292 -148903140 + RMER4A LTR ERVK 3 464 -2 3 953 3742 120 21 9 chr1 48292715 48293296 -148902136 + Lx LINE L1 6064 6651 -3 3 953 3502 142 11 39 chr1 48294186 48294800 -148900632 + Lx LINE L1 6058 6654 0 3 953 23 0 0 0 chr1 48294810 48294833 -148900599 + AT_rich Low_complexity Low_complexity 1 23 0 3 953 407 336 31 35 chr1 48294860 48295088 -148900344 - MER45B DNA Tip100 -248 792 566 3 953 795 215 152 12 chr1 48295106 48295356 -148900076 + Lx3C LINE L1 6690 6974 -2 3 953 281 294 108 0 chr1 48295852 48295954 -148899478 + MTC LTR MaLR 309 421 0 3 953 545 119 0 71 chr1 48296017 48296144 -148899288 + Lx3A LINE L1 6864 6981 0 3 953 331 355 79 51 chr1 48296384 48296562 -148898870 - MER45B DNA Tip100 -844 196 14 3 953 32 57 0 0 chr1 48296696 48296749 -148898683 + AT_rich Low_complexity Low_complexity 1 53 0 3 953 22 94 0 0 chr1 48299114 48299178 -148896254 + AT_rich Low_complexity Low_complexity 1 64 0 3 953 1141 328 31 42 chr1 48299876 48300490 -148894942 + Lx9 LINE L1 6612 7218 -426 3 953 24 0 0 0 chr1 48300496 48300520 -148894912 + AT_rich Low_complexity Low_complexity 1 24 0 3 953 396 0 0 0 chr1 48300663 48300707 -148894725 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 953 23 0 0 0 chr1 48300773 48300796 -148894636 + AT_rich Low_complexity Low_complexity 1 23 0 3 953 24 0 0 0 chr1 48300900 48300924 -148894508 + AT_rich Low_complexity Low_complexity 1 24 0 3 953 26 0 0 0 chr1 48301005 48301031 -148894401 + AT_rich Low_complexity Low_complexity 1 26 0 3 953 1057 235 5 5 chr1 48301822 48302036 -148893396 - Lx5 LINE L1 -102 6948 6735 3 953 405 0 0 0 chr1 48302321 48302366 -148893066 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 953 518 349 96 15 chr1 48302643 48302973 -148892459 - MTE2b LTR MaLR -25 354 1 3 953 312 370 16 0 chr1 48302982 48303109 -148892323 - MTE2b-int LTR MaLR -7 1573 1445 3 953 305 333 91 59 chr1 48303186 48303406 -148892026 + B4 SINE B4 55 281 -11 3 953 1417 323 142 21 chr1 48303436 48304106 -148891326 - MTE2b-int LTR MaLR -178 1402 652 3 953 29495 127 11 12 chr1 48304162 48310433 -148884999 + L1_Mus1 LINE L1 261 6565 -2 3 953 2635 73 193 2 chr1 48310912 48311165 -148884267 + MT2C_Mm LTR ERVL 1 282 -193 3 953 513 0 0 0 chr1 48311165 48311222 -148884210 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 953 2635 73 193 2 chr1 48311222 48311367 -148884065 + MT2C_Mm LTR ERVL 283 473 -2 3 953 1275 297 42 8 chr1 48311437 48311790 -148883642 + MTE2a LTR MaLR 15 379 0 3 953 1016 317 62 18 chr1 48311925 48311936 -148883496 - MTE2b-int LTR MaLR -1129 451 442 3 953 1046 78 0 43 chr1 48311936 48312124 -148883308 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 953 1016 317 62 18 chr1 48312124 48312498 -148882934 - MTE2b-int LTR MaLR -1139 441 49 3 953 589 282 118 19 chr1 48312548 48312769 -148882663 - MTEa LTR MaLR -129 250 1 3 953 1593 316 42 11 chr1 48313089 48313717 -148881715 - Lx9 LINE L1 -678 6966 6174 3 953 306 0 0 0 chr1 48313717 48313751 -148881681 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 953 1160 281 52 11 chr1 48313751 48314337 -148881095 - Lx9 LINE L1 -1300 6173 5532 3 953 979 233 42 19 chr1 48314365 48314685 -148880747 + BGLII_B LTR ERVK 110 441 0 3 953 746 276 137 19 chr1 48314690 48315055 -148880377 - Lx9 LINE L1 -349 5498 5091 3 953 27 49 0 0 chr1 48317186 48317227 -148878205 + AT_rich Low_complexity Low_complexity 1 41 0 3 953 423 306 166 6 chr1 48317411 48317592 -148877840 + B3 SINE B2 1 210 -6 3 953 22 80 0 0 chr1 48318112 48318162 -148877270 + AT_rich Low_complexity Low_complexity 1 50 0 3 953 1591 311 99 47 chr1 48318196 48318519 -148876913 + Lx8 LINE L1 6134 6464 -1009 4 953 438 20 0 0 chr1 48318519 48318570 -148876862 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 953 1591 311 99 47 chr1 48318570 48319073 -148876359 + Lx8 LINE L1 6465 7003 -470 4 953 1058 290 140 3 chr1 48319085 48319414 -148876018 - MTD LTR MaLR -14 405 32 4 953 458 303 36 31 chr1 48319453 48319647 -148875785 + Lx8 LINE L1 6999 7193 -280 4 953 226 393 154 7 chr1 48320013 48320149 -148875283 + RSINE1 SINE B4 10 165 0 4 953 228 267 107 80 chr1 48320084 48320271 -148875161 - RLTR21 LTR ERVK -291 1281 1090 4 953 345 47 0 0 chr1 48320321 48320364 -148875068 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 953 1093 70 14 7 chr1 48320364 48320509 -148874923 - B1_Mus1 SINE Alu -2 146 1 4 953 204 40 0 0 chr1 48320529 48320554 -148874878 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 4 953 8856 70 12 12 chr1 48320559 48322188 -148873244 - L1Md_T LINE L1 -31 6978 5356 4 953 8151 25 1 0 chr1 48322187 48323149 -148872283 + L1Md_T LINE L1 4395 5357 -526 4 953 9031 110 18 49 chr1 48323146 48324097 -148871335 - Lx3_Mus LINE L1 -312 6697 5782 4 953 2928 89 17 5 chr1 48324097 48324513 -148870919 - L1_Mus3 LINE L1 -10 6628 6208 4 953 9031 87 5 32 chr1 48324513 48325048 -148870384 - Lx3_Mus LINE L1 -102 5784 5269 4 953 363 17 50 17 chr1 48325048 48325108 -148870324 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 4 953 9031 87 5 32 chr1 48325108 48325821 -148869611 - Lx3_Mus LINE L1 -618 5268 4564 4 953 270 0 0 0 chr1 48325930 48325960 -148869472 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 953 729 61 10 0 chr1 48325961 48326060 -148869372 - B1_Mus2 SINE Alu 0 147 48 4 953 298 213 0 62 chr1 48326004 48326084 -148869348 - RLTR25B LTR ERVK -526 502 428 4 953 242 350 0 0 chr1 48328069 48328149 -148867283 - B1F1 SINE Alu -5 144 65 4 953 3182 18 2 78 chr1 48329388 48329810 -148865622 + RLTR10 LTR ERVK 1 390 0 4 953 448 303 85 78 chr1 48329817 48330277 -148865155 + L1_Rod LINE L1 1476 1938 -3909 4 953 213 39 0 0 chr1 48330277 48330303 -148865129 + (GAA)n Simple_repeat Simple_repeat 2 27 0 4 953 448 303 85 78 chr1 48330303 48330568 -148864864 + L1_Rod LINE L1 1939 2206 -3641 4 953 388 199 146 0 chr1 48330592 48330688 -148864744 + B1_Mus2 SINE Alu 18 127 -20 4 953 395 330 78 10 chr1 48331385 48331578 -148863854 + L1M2 LINE L1 5077 5282 -861 4 953 1060 96 7 0 chr1 48331707 48331853 -148863579 + B1_Mus1 SINE Alu 2 148 0 4 953 300 83 0 0 chr1 48332499 48332547 -148862885 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 953 396 0 0 0 chr1 48332547 48332590 -148862842 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 953 626 329 56 24 chr1 48332599 48332851 -148862581 - B4A SINE B4 -25 267 8 4 953 189 147 0 0 chr1 48333662 48333696 -148861736 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 4 953 234 0 0 0 chr1 48333869 48333895 -148861537 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 953 291 391 106 26 chr1 48334204 48334469 -148860963 - B4A SINE B4 -4 288 3 4 953 1762 225 84 49 chr1 48334957 48335444 -148859988 + RLTR20B3 LTR ERVK 5 508 -69 4 953 22 35 0 0 chr1 48336145 48336174 -148859258 + AT_rich Low_complexity Low_complexity 1 29 0 4 953 441 259 37 0 chr1 48336524 48336632 -148858800 + ID_B1 SINE B4 113 224 0 4 953 26 30 0 0 chr1 48337842 48337875 -148857557 + AT_rich Low_complexity Low_complexity 1 33 0 4 953 17493 88 3 9 chr1 48337933 48341093 -148854339 - L1Md_F2 LINE L1 0 6582 3446 4 953 35689 42 1 16 chr1 48341096 48344822 -148850610 - L1Md_T LINE L1 0 6582 2934 4 953 4169 13 38 0 chr1 48344822 48345297 -148850135 + MT2_Mm LTR ERVL 1 493 0 4 953 35689 82 13 22 chr1 48345297 48347831 -148847601 - L1Md_T LINE L1 -2950 2933 410 4 953 219 345 42 50 chr1 48347840 48347959 -148847473 - ID_B1 SINE B4 -8 216 99 4 953 27 29 0 0 chr1 48348294 48348328 -148847104 + AT_rich Low_complexity Low_complexity 1 34 0 4 953 899 286 11 11 chr1 48348337 48348599 -148846833 + MTC-int LTR MaLR 308 569 -689 4 953 180 0 0 0 chr1 48348805 48348825 -148846607 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 953 11162 153 30 113 chr1 48348847 48351492 -148843940 - L1_Mur2 LINE L1 -386 5491 3068 4 953 6565 139 11 4 chr1 48351490 48352636 -148842796 + L1_Mus4 LINE L1 5483 6636 0 4 953 182 91 30 0 chr1 48352646 48352679 -148842753 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 4 953 22 35 0 0 chr1 48352798 48352827 -148842605 + AT_rich Low_complexity Low_complexity 1 29 0 4 953 4064 183 32 30 chr1 48353218 48354079 -148841353 + Lx3C LINE L1 6108 6970 -6 4 953 26 40 0 20 chr1 48354087 48354108 -148841324 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 290 26 0 25 chr1 48354114 48354154 -148841278 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 953 1070 90 7 7 chr1 48354154 48354292 -148841140 - B1_Mus1 SINE Alu -9 139 1 4 953 26 40 0 20 chr1 48354292 48354321 -148841111 + AT_rich Low_complexity Low_complexity 1 29 0 4 953 666 340 109 28 chr1 48354362 48355074 -148840358 - Lx8 LINE L1 -45 7428 6654 4 953 529 302 104 5 chr1 48355071 48355328 -148840104 - Lx8 LINE L1 -1182 6514 6229 4 953 3651 10 0 0 chr1 48356079 48356490 -148838942 + L1Md_A LINE L1 5176 5586 -297 4 953 8693 19 0 1 chr1 48356490 48357487 -148837945 + L1Md_A LINE L1 5587 6582 0 4 953 27 0 0 0 chr1 48357793 48357820 -148837612 + AT_rich Low_complexity Low_complexity 1 27 0 4 953 21 0 0 0 chr1 48358030 48358051 -148837381 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 1223 238 110 60 chr1 48358791 48359278 -148836154 - RLTR20B3 LTR ERVK -32 545 28 4 953 2240 181 40 6 chr1 48359278 48359756 -148835676 + MYSERV16_I-int LTR ERVK 1833 2326 0 4 953 697 206 340 78 chr1 48359760 48360099 -148835333 + RLTR20B3 LTR ERVK 21 448 -129 4 953 508 196 57 127 chr1 48360079 48360237 -148835195 - RLTR20B3 LTR ERVK -423 154 8 4 953 252 86 0 0 chr1 48360390 48360425 -148835007 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 953 517 293 96 31 chr1 48360666 48360895 -148834537 + Lx7 LINE L1 7096 7339 -357 4 953 511 15 14 14 chr1 48361496 48361565 -148833867 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 4 953 5659 102 13 13 chr1 48362554 48362738 -148832694 - L1_Mus3 LINE L1 0 6638 6459 4 953 3056 40 42 0 chr1 48362738 48363116 -148832316 + MTA_Mm LTR MaLR 3 396 0 4 953 5659 102 13 13 chr1 48363116 48363787 -148831645 - L1_Mus3 LINE L1 -180 6458 5783 4 953 6253 83 19 2 chr1 48363790 48364632 -148830800 - L1_Mus1 LINE L1 -6 6561 5706 4 119 10132 122 5 1 chr1 48364629 48366105 -148829327 + L1_Mus1 LINE L1 4163 5642 -241 4 954 3551 65 23 6 chr1 48366105 48366582 -148828850 + L1Md_F3 LINE L1 6100 6584 0 4 954 10132 122 5 1 chr1 48366582 48366649 -148828783 + L1_Mm LINE L1 5643 5713 -170 4 954 207 0 0 0 chr1 48366690 48366713 -148828719 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 954 1121 90 0 0 chr1 48366713 48366858 -148828574 - B1_Mus2 SINE Alu -2 145 1 4 954 17171 155 13 5 chr1 48366858 48369903 -148825529 - L1_Mm LINE L1 -91 5792 2725 4 954 725 247 16 0 chr1 48369899 48370085 -148825347 - Lx9 LINE L1 -587 7057 6869 4 954 22 56 0 0 chr1 48372106 48372142 -148823290 + AT_rich Low_complexity Low_complexity 1 36 0 4 954 22 35 0 0 chr1 48372412 48372441 -148822991 + AT_rich Low_complexity Low_complexity 1 29 0 4 954 292 368 5 25 chr1 48373242 48373440 -148821992 + Lx9 LINE L1 7171 7364 -280 4 954 633 38 0 0 chr1 48373483 48373563 -148821869 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 954 318 148 0 0 chr1 48373591 48373645 -148821787 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 954 235 235 14 14 chr1 48373653 48373722 -148821710 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 954 1709 190 94 31 chr1 48373846 48374534 -148820898 + L1_Mur1 LINE L1 1 1021 -5961 4 954 2516 142 62 2 chr1 48374514 48374946 -148820486 + Lx3_Mus LINE L1 6259 6716 -293 4 954 4052 101 16 5 chr1 48374941 48375559 -148819873 + MusHAL1 LINE L1 2087 2711 -1 4 954 1493 242 71 20 chr1 48375555 48375963 -148819469 + Lx9 LINE L1 7040 7468 -176 4 954 3621 135 8 14 chr1 48376299 48376884 -148818548 - Lx3B LINE L1 -443 6530 5949 4 954 1325 184 38 4 chr1 48376884 48377146 -148818286 + Lx3_Mus LINE L1 6704 6974 -7 4 954 218 183 14 0 chr1 48377150 48377221 -148818211 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 4 954 207 333 11 35 chr1 48377642 48377729 -148817703 - L3 LINE CR1 -3518 971 887 4 954 743 309 24 0 chr1 48377789 48377996 -148817436 + Lx5 LINE L1 6169 6380 -670 4 954 2967 62 5 0 chr1 48378012 48378402 -148817030 + L1_Mus1 LINE L1 6174 6565 -2 4 954 952 295 93 13 chr1 48378466 48378854 -148816578 + Lx6 LINE L1 6945 7363 -97 4 954 459 132 18 54 chr1 48378929 48379041 -148816391 + RMER6B LTR ERVK 138 245 -216 4 954 2018 41 0 0 chr1 48379042 48379287 -148816145 + L1Md_F3 LINE L1 6319 6563 -21 4 954 1038 231 5 9 chr1 48379295 48379513 -148815919 + RMER6B LTR ERVK 245 461 0 4 954 360 301 12 133 chr1 48379724 48379965 -148815467 - B3 SINE B2 -4 212 1 4 954 527 191 53 45 chr1 48380179 48380311 -148815121 - RMER19C LTR ERVK 0 611 479 4 954 3433 53 0 2 chr1 48380311 48380742 -148814690 + L1Md_F2 LINE L1 5706 6471 -526 4 954 2025 123 0 3 chr1 48380742 48381035 -148814397 + IAPEy-int LTR ERVK 19 310 -7203 4 954 3698 128 13 14 chr1 48381428 48382055 -148813377 + IAPEy-int LTR ERVK 433 1058 -6455 4 954 20674 69 5 4 chr1 48382055 48384764 -148810668 + IAPEy-int LTR ERVK 4804 7513 0 4 954 2597 58 12 0 chr1 48384764 48385091 -148810341 + IAPEY_LTR LTR ERVK 55 385 0 4 954 5973 164 9 6 chr1 48385091 48386430 -148809002 - Lx2 LINE L1 -398 6599 5254 4 954 3373 186 30 3 chr1 48386427 48387119 -148808313 + Lx2 LINE L1 4547 5257 -620 4 954 25 65 0 0 chr1 48387788 48387834 -148807598 + AT_rich Low_complexity Low_complexity 1 46 0 4 954 5390 45 6 19 chr1 48388563 48389250 -148806182 + L1Md_F3 LINE L1 5896 6573 -11 4 954 269 355 40 16 chr1 48389565 48389691 -148805741 - B4A SINE B4 0 292 164 4 954 415 296 139 159 chr1 48389691 48389872 -148805560 - MTD LTR MaLR -26 353 168 4 954 2719 59 75 0 chr1 48389872 48390230 -148805202 - IAPEY_LTR LTR ERVK 0 385 1 4 954 440 296 135 154 chr1 48390230 48390400 -148805032 - MTD LTR MaLR -212 167 7 4 954 28 48 0 0 chr1 48390774 48390816 -148804616 + AT_rich Low_complexity Low_complexity 1 42 0 4 954 235 393 0 0 chr1 48391159 48391220 -148804212 - ID4_ SINE ID -7 76 16 4 954 306 259 49 90 chr1 48391286 48391430 -148804002 + B3A SINE B2 6 143 -55 4 954 1911 114 37 61 chr1 48391592 48391920 -148803512 - ORR1A2 LTR MaLR 0 327 8 4 954 417 39 0 0 chr1 48392058 48392109 -148803323 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 954 267 31 0 0 chr1 48392689 48392721 -148802711 + (TTA)n Simple_repeat Simple_repeat 1 32 0 5 954 519 330 42 25 chr1 48392754 48392990 -148802442 - Lx6 LINE L1 -61 7399 7160 5 954 276 314 128 34 chr1 48392991 48393311 -148802121 + MLT-int LTR MaLR 1345 1694 -41 5 954 234 246 16 32 chr1 48393869 48393932 -148801500 - ID4 SINE ID -13 70 9 5 954 258 250 0 12 chr1 48394021 48394106 -148801326 - Lx9 LINE L1 -3 7641 7558 5 954 5343 93 27 8 chr1 48394129 48394912 -148800520 - L1_Mus3 LINE L1 0 6638 5841 5 954 318 224 52 15 chr1 48394913 48395049 -148800383 - Lx9 LINE L1 -68 7576 7436 5 954 3277 75 7 0 chr1 48395112 48395541 -148799891 - L1_Mus1 LINE L1 -6 6561 6130 5 954 2747 77 0 0 chr1 48395541 48395892 -148799540 + L1_Mm LINE L1 5396 5746 -137 5 954 2453 257 77 12 chr1 48395908 48396637 -148798795 - Lx9 LINE L1 -248 7396 6621 5 954 1838 43 26 4 chr1 48396634 48396867 -148798565 + L1Md_F3 LINE L1 6326 6563 -21 5 954 777 272 65 76 chr1 48396879 48397228 -148798204 - Lx9 LINE L1 -1021 6623 6269 5 954 441 66 0 0 chr1 48397228 48397289 -148798143 + (CATA)n Simple_repeat Simple_repeat 4 64 0 5 954 777 272 65 76 chr1 48397289 48397428 -148798004 - Lx9 LINE L1 -1376 6268 6140 5 954 336 339 74 22 chr1 48397860 48398089 -148797343 + BLACKJACK DNA AcHobo 105 345 -2599 5 954 621 243 158 16 chr1 48398836 48399020 -148796412 + Lx4A LINE L1 6849 7058 0 5 954 2251 281 101 107 chr1 48400206 48400534 -148794898 - Lx9 LINE L1 -1 7643 7290 5 954 1712 145 49 43 chr1 48400534 48400859 -148794573 + ORR1A2 LTR MaLR 1 327 0 5 954 2251 281 101 107 chr1 48400859 48401028 -148794404 - Lx9 LINE L1 -355 7289 7121 5 954 462 36 0 0 chr1 48401028 48401084 -148794348 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 5 954 2251 281 101 107 chr1 48401084 48401096 -148794336 - Lx9 LINE L1 -524 7120 7120 5 954 1022 93 0 21 chr1 48401096 48401238 -148794194 - B1_Mus1 SINE Alu -9 139 1 5 954 2251 281 101 107 chr1 48401238 48401837 -148793595 - Lx9 LINE L1 -524 7120 6547 5 954 2020 55 0 0 chr1 48401837 48402090 -148793342 - L1Md_A LINE L1 -1 6581 6329 5 954 2251 281 101 107 chr1 48402090 48402313 -148793119 - Lx9 LINE L1 -1098 6546 6318 5 954 816 309 32 16 chr1 48402353 48402853 -148792579 + L1_Mur3 LINE L1 2543 3050 -2830 5 954 4441 198 104 27 chr1 48402903 48404209 -148791223 - L1_Mur3 LINE L1 -1335 4545 3139 5 954 326 232 137 0 chr1 48404211 48404306 -148791126 + L1_Mur3 LINE L1 4558 4665 -1215 5 954 480 145 0 0 chr1 48404306 48404382 -148791050 + B1_Mus2 SINE Alu 59 134 -13 5 954 498 109 0 0 chr1 48404384 48404476 -148790956 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 5 954 1130 243 35 16 chr1 48404477 48404795 -148790637 + L1_Mur3 LINE L1 4669 4992 -888 5 954 384 294 0 0 chr1 48404814 48404923 -148790509 + Lx7 LINE L1 7236 7344 -352 5 954 621 241 34 163 chr1 48405001 48405387 -148790045 + Lx7 LINE L1 7356 7691 -5 5 954 422 310 62 23 chr1 48405404 48405790 -148789642 + L1_Mur3 LINE L1 3073 3473 -2407 5 954 3967 162 42 0 chr1 48405784 48406444 -148788988 + L1VL4 LINE L1 1 688 -5614 5 954 383 279 98 22 chr1 48406430 48406555 -148788877 + L1_Mur3 LINE L1 4146 4279 -1601 5 954 368 55 18 0 chr1 48406555 48406610 -148788822 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 5 954 383 279 98 22 chr1 48406610 48406759 -148788673 + L1_Mur3 LINE L1 4280 4440 -1440 5 954 24 32 0 0 chr1 48406929 48406960 -148788472 + AT_rich Low_complexity Low_complexity 1 31 0 5 954 323 281 118 12 chr1 48407066 48407235 -148788197 + MER90 LTR ERV1 2 188 -387 5 954 551 15 0 14 chr1 48407667 48407736 -148787696 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 954 288 0 0 0 chr1 48407736 48407767 -148787665 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 954 2803 278 120 9 chr1 48408763 48409654 -148785778 + Lx7 LINE L1 6237 7226 -470 5 954 1510 223 96 84 chr1 48409654 48410167 -148785265 - RLTR11A LTR ERVK 0 528 10 5 954 629 220 84 6 chr1 48410171 48410349 -148785083 + Lx7 LINE L1 7221 7412 -284 5 954 7011 35 2 0 chr1 48410359 48411194 -148784238 - L1Md_T LINE L1 0 6582 5746 5 954 2874 27 3 0 chr1 48411194 48411530 -148783902 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 954 55750 21 12 6 chr1 48411530 48413116 -148782316 - IAPEz-int LTR ERVK 0 6481 4895 5 954 3302 16 39 0 chr1 48413116 48413497 -148781935 + MTA_Mm LTR MaLR 1 396 0 5 954 9504 17 2 3 chr1 48413497 48414596 -148780836 + MTA_Mm-int LTR MaLR 1 1098 0 5 954 3302 16 39 0 chr1 48414596 48414977 -148780455 + MTA_Mm LTR MaLR 1 396 0 5 954 55750 21 12 6 chr1 48414977 48419819 -148775613 - IAPEz-int LTR ERVK -1587 4894 10 5 954 2899 24 3 0 chr1 48419819 48420155 -148775277 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 954 36404 47 1 4 chr1 48420155 48425713 -148769719 - L1Md_Gf LINE L1 -132 5754 116 5 954 384 22 0 0 chr1 48425733 48425778 -148769654 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 954 21 36 0 0 chr1 48425781 48425809 -148769623 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 188 286 77 31 chr1 48426076 48426141 -148769291 + L2b LINE L2 3001 3068 -307 5 954 2884 175 12 4 chr1 48426348 48426864 -148768568 - Lx LINE L1 -1 6653 6134 5 954 923 207 15 15 chr1 48426881 48427082 -148768350 - Lx LINE L1 -44 6610 6410 5 954 6906 157 164 0 chr1 48427070 48428893 -148766539 - L1_Mus4 LINE L1 -523 6113 3921 5 954 543 304 44 42 chr1 48429819 48430203 -148765229 - L1MC4 LINE L1 -443 7599 7215 5 954 188 122 77 11 chr1 48430218 48430309 -148765123 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 5 954 1737 290 58 14 chr1 48431387 48431874 -148763558 + Lx5 LINE L1 6532 7039 -11 5 954 31 26 0 0 chr1 48431950 48431988 -148763444 + AT_rich Low_complexity Low_complexity 1 38 0 5 954 409 212 31 117 chr1 48433149 48433277 -148762155 + RLTR19-int LTR ERVK 4223 4339 -1798 5 954 1317 236 29 172 chr1 48433519 48434134 -148761298 + RLTR24 LTR ERV1 1 527 -2 5 954 201 266 0 31 chr1 48434569 48434666 -148760766 + (CAAA)n Simple_repeat Simple_repeat 2 95 0 5 954 1167 62 0 0 chr1 48435626 48435770 -148759662 - B1_Mus1 SINE Alu 0 148 5 5 954 306 331 29 12 chr1 48435771 48435942 -148759490 + L1_Mur3 LINE L1 2298 2471 -3409 5 954 622 349 82 44 chr1 48435977 48436588 -148758844 + L1M2 LINE L1 2545 3178 -2965 5 954 2394 265 58 107 chr1 48436691 48437956 -148757476 + RMER1B Other Other 73 1065 -1 5 954 269 319 12 21 chr1 48438014 48438221 -148757211 + L1_Mur3 LINE L1 4753 4985 -1155 5 954 3310 28 15 0 chr1 48438444 48438834 -148756598 + MTA_Mm LTR MaLR 1 396 0 5 954 801 172 6 41 chr1 48439110 48439280 -148756152 - Lx3C LINE L1 -7 6969 6806 5 954 395 363 31 26 chr1 48439286 48439481 -148755951 - B3A SINE B2 0 198 3 5 954 1889 239 31 15 chr1 48439678 48440197 -148755235 + RLTR11A2 LTR ERVK 1 527 0 5 954 24 0 0 0 chr1 48441167 48441191 -148754241 + AT_rich Low_complexity Low_complexity 1 24 0 5 954 231 214 61 67 chr1 48441614 48441779 -148753653 - Lx9 LINE L1 0 7644 7481 5 954 607 281 48 15 chr1 48441812 48442083 -148753349 - Lx9 LINE L1 -127 7517 7238 5 954 664 69 50 0 chr1 48442689 48442790 -148752642 - MusHAL1 LINE L1 -1890 822 717 5 954 31 76 0 0 chr1 48443393 48443459 -148751973 + AT_rich Low_complexity Low_complexity 1 66 0 5 954 6114 116 47 5 chr1 48443517 48444494 -148750938 - Lx3_Mus LINE L1 0 7009 5992 5 954 6337 90 5 6 chr1 48444494 48445458 -148749974 + Lx3A LINE L1 4996 5955 -1026 5 954 330 67 0 0 chr1 48445495 48445540 -148749892 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 954 294 291 113 43 chr1 48445570 48445685 -148749747 - RSINE1 SINE B4 -37 128 6 5 954 489 213 6 11 chr1 48446208 48446384 -148749048 + (TA)n Simple_repeat Simple_repeat 1 175 0 5 954 22 35 0 0 chr1 48446588 48446617 -148748815 + AT_rich Low_complexity Low_complexity 1 29 0 5 954 430 326 0 30 chr1 48446638 48446771 -148748661 + RMER15-int LTR ERVL 1094 1222 -3777 5 954 1019 85 0 0 chr1 48446950 48447080 -148748352 + B1_Mus1 SINE Alu 1 130 -18 5 954 315 0 0 0 chr1 48447081 48447116 -148748316 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 954 1383 209 68 16 chr1 48447245 48447629 -148747803 + Lx2 LINE L1 1669 2072 -3808 5 954 2262 233 38 20 chr1 48447630 48448181 -148747251 + RLTR20B1 LTR ERVK 3 563 0 5 954 3025 184 52 8 chr1 48448202 48448850 -148746582 + Lx2 LINE L1 2061 2737 -3140 5 954 4878 162 46 18 chr1 48448850 48449766 -148745666 + Lx3B LINE L1 6022 6963 -10 5 954 288 143 145 72 chr1 48449803 48449886 -148745546 + Lx2 LINE L1 2738 2826 -3054 5 954 235 241 62 12 chr1 48449871 48449951 -148745481 + L1_Mur2 LINE L1 2362 2445 -3432 5 954 2145 214 58 50 chr1 48449955 48450169 -148745263 + RLTR20B3 LTR ERVK 22 243 -334 5 954 603 0 0 0 chr1 48450169 48450236 -148745196 + (GGA)n Simple_repeat Simple_repeat 1 67 0 5 954 2145 214 58 50 chr1 48450236 48450557 -148744875 + RLTR20B3 LTR ERVK 244 561 -16 5 954 2960 211 20 204 chr1 48450561 48451290 -148744142 + Lx2 LINE L1 2814 3331 -2546 5 954 3058 45 0 8 chr1 48451290 48451669 -148743763 + L1Md_F2 LINE L1 6194 6569 -13 5 954 2960 211 20 204 chr1 48451669 48452086 -148743346 + Lx2 LINE L1 3332 3665 -2212 5 954 504 32 0 0 chr1 48452086 48452148 -148743284 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 954 2960 211 20 204 chr1 48452148 48452628 -148742804 + Lx2 LINE L1 3666 4142 -1735 5 954 7519 167 40 4 chr1 48452625 48454686 -148740746 + Lx2 LINE L1 4860 6996 -1 5 954 2261 227 57 13 chr1 48454679 48454888 -148740544 + Lx5 LINE L1 5235 5445 -432 5 954 2102 147 35 32 chr1 48454888 48455290 -148740142 + Lx LINE L1 6250 6652 -2 5 954 2600 246 50 12 chr1 48455290 48456139 -148739293 + Lx5 LINE L1 5446 6353 -697 5 954 605 267 42 110 chr1 48456756 48456838 -148738594 + MT2A LTR ERVL 1 81 -452 5 954 424 128 32 11 chr1 48456838 48456933 -148738499 - Lx LINE L1 -4 6650 6554 5 954 605 303 45 80 chr1 48456933 48457258 -148738174 + MT2A LTR ERVL 82 540 -61 5 954 21 0 0 0 chr1 48457277 48457298 -148738134 + AT_rich Low_complexity Low_complexity 1 21 0 5 954 252 0 0 0 chr1 48457508 48457536 -148737896 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 954 2194 203 118 6 chr1 48457621 48458102 -148737330 - RLTR12A LTR ERVK -25 543 9 5 954 704 221 110 0 chr1 48459197 48459342 -148736090 + Lx5 LINE L1 6895 7055 -3 5 954 570 292 6 29 chr1 48459495 48459668 -148735764 - MTEa LTR MaLR 0 379 211 5 954 1555 27 0 21 chr1 48459674 48459862 -148735570 - L1Md_F2 LINE L1 -295 6287 6104 5 954 1792 92 27 53 chr1 48459862 48460161 -148735271 + L1Md_F2 LINE L1 6280 6570 -12 5 954 529 311 31 0 chr1 48460183 48460344 -148735088 - MTEa LTR MaLR -182 197 32 5 954 466 258 144 35 chr1 48460382 48460622 -148734810 - MTEa-int LTR MaLR -8 1572 1153 5 954 3268 266 70 11 chr1 48460624 48461118 -148734314 - Lx6 LINE L1 -59 7401 6882 5 954 606 28 0 0 chr1 48461118 48461190 -148734242 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 954 3268 266 70 11 chr1 48461190 48461575 -148733857 - Lx6 LINE L1 -579 6881 6471 5 954 844 194 45 6 chr1 48461578 48461754 -148733678 - URR1A DNA MER1_type 0 226 44 5 954 810 275 26 0 chr1 48461771 48461960 -148733472 - Lx6 LINE L1 -1083 6377 6184 5 954 315 312 28 0 chr1 48461964 48461998 -148733434 - MTE-int LTR MaLR -188 1392 1357 5 954 309 51 0 0 chr1 48461998 48462037 -148733395 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 954 315 312 28 0 chr1 48462037 48462111 -148733321 - MTE-int LTR MaLR -224 1356 1282 5 954 1180 226 72 11 chr1 48462115 48462202 -148733230 - RLTR20B3 LTR ERVK -4 573 470 5 954 369 0 0 0 chr1 48462202 48462243 -148733189 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 954 1180 226 72 11 chr1 48462243 48462419 -148733013 - RLTR20B3 LTR ERVK -108 469 295 5 954 21 36 0 0 chr1 48462813 48462841 -148732591 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 1143 63 0 0 chr1 48464417 48464560 -148730872 + B1_Mus1 SINE Alu 1 143 -5 5 954 183 114 0 0 chr1 48464607 48464642 -148730790 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 954 312 70 0 0 chr1 48465205 48465248 -148730184 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 954 21 0 0 0 chr1 48465398 48465419 -148730013 + AT_rich Low_complexity Low_complexity 1 21 0 5 954 583 258 57 31 chr1 48465428 48465620 -148729812 - B3 SINE B2 -19 197 1 5 954 299 304 83 49 chr1 48465995 48466199 -148729233 - L1MB1 LINE L1 -121 6068 5858 6 954 230 373 75 32 chr1 48466662 48466942 -148728490 + MamRep605 Unknown Unknown 370 661 -215 6 954 23 0 0 0 chr1 48467286 48467309 -148728123 + AT_rich Low_complexity Low_complexity 1 23 0 6 954 791 190 16 38 chr1 48467459 48467645 -148727787 - B2_Mm2 SINE B2 -13 182 1 6 954 243 299 40 83 chr1 48467672 48467869 -148727563 - Lx7 LINE L1 0 7696 7511 6 954 351 0 0 0 chr1 48467869 48467908 -148727524 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 954 216 0 0 0 chr1 48467908 48467931 -148727501 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 954 243 299 40 83 chr1 48467931 48467984 -148727448 - Lx7 LINE L1 -186 7510 7457 6 954 23 33 0 0 chr1 48469380 48469410 -148726022 + AT_rich Low_complexity Low_complexity 1 30 0 6 954 8813 46 2 23 chr1 48470263 48472202 -148723230 + L1Md_T LINE L1 449 2340 -3543 6 954 6888 26 1 1 chr1 48472198 48473014 -148722418 + L1Md_T LINE L1 4771 5586 -297 6 954 8290 36 5 0 chr1 48473014 48474005 -148721427 + L1Md_T LINE L1 5587 6582 0 6 954 274 286 11 35 chr1 48474367 48474454 -148720978 - MLT1A1 LTR MaLR -33 375 291 6 954 232 291 0 37 chr1 48474464 48474497 -148720935 + polypyrimidine Low_complexity Low_complexity 50 80 0 6 954 411 21 0 0 chr1 48474497 48474545 -148720887 + (TTA)n Simple_repeat Simple_repeat 1 48 0 6 954 232 291 0 37 chr1 48474545 48474593 -148720839 + polypyrimidine Low_complexity Low_complexity 2 49 0 6 954 192 158 0 0 chr1 48474596 48474634 -148720798 + CT-rich Low_complexity Low_complexity 2 39 0 6 954 41127 5 1 0 chr1 48474644 48481200 -148714232 - L1Md_A LINE L1 0 6582 23 6 954 1167 198 9 5 chr1 48481411 48481629 -148713803 + URR1A DNA MER1_type 8 226 0 6 954 2822 152 184 0 chr1 48481900 48482727 -148712705 - L1_Mus4 LINE L1 -616 6020 4931 6 954 2390 222 4 27 chr1 48482728 48483247 -148712185 + Lx LINE L1 6058 6564 -90 6 954 4520 88 3 8 chr1 48483320 48483940 -148711492 - L1_Mus1 LINE L1 0 6567 5951 6 954 1184 172 38 0 chr1 48485273 48485482 -148709950 - L1_Mm LINE L1 -220 5663 5447 6 954 186 103 0 0 chr1 48485482 48485511 -148709921 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 6 954 2989 30 16 0 chr1 48485613 48485978 -148709454 - MT2_Mm LTR ERVL -122 371 1 6 954 290 26 0 0 chr1 48485978 48486016 -148709416 - MERVL-int LTR ERVL 0 5485 5448 6 954 392 167 46 35 chr1 48486016 48486103 -148709329 - ORR1A3-int LTR MaLR -1323 640 553 6 954 2758 150 20 2 chr1 48486477 48486964 -148708468 - L1_Mur2 LINE L1 -428 5449 4954 6 954 928 102 44 0 chr1 48486966 48487103 -148708329 + L1_Mus4 LINE L1 5666 5808 -828 6 954 207 0 0 0 chr1 48487172 48487195 -148708237 + (A)n Simple_repeat Simple_repeat 1 23 0 6 954 388 255 78 32 chr1 48487251 48487405 -148708027 + L1M5 LINE L1 5316 5476 -697 6 954 1284 35 95 0 chr1 48487465 48487634 -148707798 - L1Md_A LINE L1 -1 6581 6397 6 954 4866 141 24 22 chr1 48487635 48488478 -148706954 + Lx LINE L1 5811 6654 0 6 954 496 318 101 33 chr1 48488634 48488940 -148706492 + Lx8 LINE L1 7144 7470 -3 6 954 362 298 8 24 chr1 48489555 48489682 -148705750 - Lx9 LINE L1 -707 6937 6813 6 954 877 315 94 47 chr1 48489813 48489891 -148705541 + Lx9 LINE L1 6469 6562 -1082 6 954 249 33 0 0 chr1 48489891 48489921 -148705511 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 954 877 315 94 47 chr1 48489921 48490111 -148705321 + Lx9 LINE L1 6563 6768 -876 6 954 459 52 0 0 chr1 48490111 48490169 -148705263 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 954 333 0 0 0 chr1 48490169 48490205 -148705227 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 954 877 315 94 47 chr1 48490205 48490421 -148705011 + Lx9 LINE L1 6769 6976 -668 6 954 1128 37 53 35 chr1 48490544 48490713 -148704719 + L1Md_F3 LINE L1 6413 6584 0 6 954 396 121 33 0 chr1 48490731 48490822 -148704610 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 954 617 331 40 16 chr1 48490822 48491144 -148704288 + Lx9 LINE L1 7139 7468 -176 6 954 28 29 0 0 chr1 48493103 48493138 -148702294 + AT_rich Low_complexity Low_complexity 1 35 0 6 954 1370 242 159 36 chr1 48493333 48493749 -148701683 - RMER13A LTR ERVK -393 467 1 6 954 30 0 0 0 chr1 48494083 48494113 -148701319 + AT_rich Low_complexity Low_complexity 1 30 0 6 954 23 0 0 0 chr1 48494153 48494176 -148701256 + AT_rich Low_complexity Low_complexity 1 23 0 6 954 573 15 0 0 chr1 48495284 48495350 -148700082 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 954 467 122 0 9 chr1 48495486 48495572 -148699860 - L1Md_F LINE L1 -5486 1051 970 6 119 15277 155 59 25 chr1 48495594 48498395 -148697037 + L1Md_F LINE L1 332 3191 -2692 6 955 985 130 7 0 chr1 48498395 48498541 -148696891 + B1_Mus1 SINE Alu 2 148 0 6 955 15277 136 45 20 chr1 48498541 48499057 -148696375 + L1Md_F LINE L1 3192 3712 -2171 6 955 4468 89 10 8 chr1 48499057 48499682 -148695750 + L1Md_F2 LINE L1 5957 6582 0 6 955 15277 136 45 20 chr1 48499682 48500000 -148695432 + L1Md_F LINE L1 3713 4086 -1797 6 955 10675 125 27 22 chr1 48500002 48501076 -148694356 + L1_Mus2 LINE L1 4089 5150 -733 1 955 306 0 0 0 chr1 48501076 48501110 -148694322 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 2 955 10675 92 12 35 chr1 48501110 48502542 -148692890 + L1_Mus2 LINE L1 5151 6566 0 1 955 181 318 91 0 chr1 48503060 48503126 -148692306 + L2a LINE L2 3340 3411 -15 3 955 366 107 0 0 chr1 48504172 48504228 -148691204 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 955 28 48 0 0 chr1 48504229 48504271 -148691161 + AT_rich Low_complexity Low_complexity 1 42 0 5 955 9385 204 75 17 chr1 48504855 48506479 -148688953 - Lx4B LINE L1 0 7000 5276 6 955 353 22 0 21 chr1 48506479 48506526 -148688906 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 7 955 9385 184 72 9 chr1 48506526 48507833 -148687599 - Lx4B LINE L1 -602 5275 3878 6 955 1071 128 0 0 chr1 48507833 48507981 -148687451 - B1_Mus1 SINE Alu 0 148 1 8 955 9385 184 72 9 chr1 48507981 48508243 -148687189 - Lx4B LINE L1 -2000 3877 3617 6 955 3453 215 34 10 chr1 48508241 48509429 -148686003 - Lx4B LINE L1 -3751 2135 917 6 955 208 224 0 0 chr1 48509776 48509825 -148685607 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 9 955 261 0 0 0 chr1 48511671 48511700 -148683732 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 955 23 33 0 0 chr1 48512353 48512383 -148683049 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 986 171 15 10 chr1 48512489 48512690 -148682742 - Lx3B LINE L1 -3 6970 6769 1 955 1058 192 228 27 chr1 48512690 48512871 -148682561 - Lx7 LINE L1 -1301 6395 6164 1 955 531 0 0 0 chr1 48512871 48512930 -148682502 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 955 1058 192 228 27 chr1 48512930 48513117 -148682315 - Lx7 LINE L1 -1533 6163 5953 1 955 285 197 0 0 chr1 48514327 48514388 -148681044 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 1 955 23 68 0 0 chr1 48514426 48514470 -148680962 + AT_rich Low_complexity Low_complexity 1 44 0 1 955 192 152 0 0 chr1 48514505 48514538 -148680894 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 955 192 365 41 7 chr1 48515879 48516025 -148679407 - MIRb SINE MIR -39 229 79 1 955 351 0 0 0 chr1 48517532 48517571 -148677861 + (T)n Simple_repeat Simple_repeat 1 39 0 1 955 473 290 136 0 chr1 48518860 48519036 -148676396 + Lx8 LINE L1 6785 6984 -489 2 955 643 76 21 11 chr1 48519043 48519136 -148676296 - U1 snRNA snRNA -70 95 2 2 955 30573 75 3 9 chr1 48519136 48523312 -148672120 + L1_Mm LINE L1 1732 5883 0 2 955 2658 72 5 68 chr1 48523320 48523734 -148671698 + RLTR10 LTR ERVK 1 388 -2 2 955 4201 55 22 1 chr1 48523746 48524604 -148670828 + RLTR10-int LTR ERVK 41 992 -995 2 955 534 332 32 21 chr1 48524629 48525048 -148670384 + RLTR10-int LTR ERVK 738 1061 -5481 2 955 8498 29 0 2 chr1 48525132 48526124 -148669308 + RLTR10-int LTR ERVK 997 1986 -1 2 955 2444 72 2 221 chr1 48526124 48526621 -148668811 + RLTR10 LTR ERVK 1 388 -2 2 955 5670 37 3 4 chr1 48526623 48527321 -148668111 + L1Md_F2 LINE L1 5886 6582 0 2 955 22 0 0 0 chr1 48527721 48527743 -148667689 + AT_rich Low_complexity Low_complexity 1 22 0 2 955 44 56 0 0 chr1 48527759 48527831 -148667601 + AT_rich Low_complexity Low_complexity 1 72 0 2 955 188 282 98 18 chr1 48528039 48528151 -148667281 - MIR SINE MIR -132 130 10 2 955 8089 242 76 28 chr1 48528279 48530338 -148665094 - Lx6 LINE L1 -11 7449 5278 2 955 4086 58 0 2 chr1 48530338 48530856 -148664576 - L1Md_F2 LINE L1 -1 6581 6065 2 955 8089 215 43 14 chr1 48530856 48531489 -148663943 - Lx6 LINE L1 -603 5277 4633 2 955 189 94 0 0 chr1 48531489 48531521 -148663911 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 955 8089 264 42 115 chr1 48531521 48532485 -148662947 - Lx6 LINE L1 -1243 4640 3750 2 955 310 331 60 99 chr1 48532485 48532787 -148662645 + RMER20B LTR ERVK 282 571 -56 3 955 8089 264 42 115 chr1 48532787 48534091 -148661341 - Lx6 LINE L1 -1243 3749 2543 2 955 5128 215 24 78 chr1 48534513 48536496 -148658936 + Lx3C LINE L1 794 2655 -3222 3 955 5461 136 18 12 chr1 48536496 48537393 -148658039 + RMER17B LTR ERVK 57 958 0 3 955 2096 169 71 4 chr1 48537393 48537857 -148657575 + MusHAL1 LINE L1 1654 2148 -564 3 955 1691 211 49 36 chr1 48537834 48538281 -148657151 + Lx3C LINE L1 4976 5428 -458 3 955 2107 108 16 3 chr1 48538283 48538598 -148656834 - ORR1A2 LTR MaLR -8 319 1 3 955 2343 179 19 1 chr1 48538598 48539098 -148656334 + Lx3C LINE L1 5427 5943 -1033 3 955 3083 185 18 29 chr1 48539103 48539837 -148655595 - Lx6 LINE L1 -3950 1930 1205 2 955 594 175 0 28 chr1 48539837 48539978 -148655454 + CT-rich Low_complexity Low_complexity 1 137 0 3 955 1188 221 64 17 chr1 48540001 48540347 -148655085 - Lx6 LINE L1 -6508 1220 859 2 955 527 303 18 6 chr1 48540372 48540538 -148654894 - Lx6 LINE L1 -7440 288 121 2 955 1101 45 0 0 chr1 48540909 48541043 -148654389 + L1Md_T LINE L1 5453 5586 -297 3 955 8421 32 0 0 chr1 48541044 48542039 -148653393 + L1Md_T LINE L1 5588 6582 0 3 955 27 0 0 0 chr1 48542494 48542521 -148652911 + AT_rich Low_complexity Low_complexity 1 27 0 3 955 21 36 0 0 chr1 48543354 48543382 -148652050 + AT_rich Low_complexity Low_complexity 1 28 0 3 955 1854 103 7 0 chr1 48544458 48544731 -148650701 - L1_Mus3 LINE L1 -7 6631 6357 4 955 1073 137 0 0 chr1 48544738 48544891 -148650541 - L1_Mus3 LINE L1 -406 6230 6078 4 955 464 181 262 7 chr1 48546727 48546872 -148648560 - URR1B DNA MER1_type -43 182 1 4 955 353 336 19 0 chr1 48547203 48547310 -148648122 - RSINE1 SINE B4 -32 133 25 4 955 396 0 0 0 chr1 48547816 48547860 -148647572 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 955 966 243 57 16 chr1 48547860 48548016 -148647416 - RMER1A Other Other -158 872 706 4 955 2959 104 21 9 chr1 48548016 48548483 -148646949 - L1_Mus4 LINE L1 -8 6628 6156 4 955 966 243 57 16 chr1 48548483 48548573 -148646859 - RMER1A Other Other -325 705 616 4 955 741 330 101 22 chr1 48548576 48548933 -148646499 - RMER1A Other Other -551 479 95 4 955 766 124 37 0 chr1 48549205 48549366 -148646066 + CT-rich Low_complexity Low_complexity 2 168 0 4 955 861 76 112 22 chr1 48549366 48549500 -148645932 - B1_Mus1 SINE Alu 0 148 3 4 955 2036 121 9 62 chr1 48549960 48550296 -148645136 + ORR1A2 LTR MaLR 1 318 -9 4 955 390 330 11 0 chr1 48550298 48550389 -148645043 - B1F1 SINE Alu -57 92 1 4 955 23 33 0 0 chr1 48550547 48550577 -148644855 + AT_rich Low_complexity Low_complexity 1 30 0 5 955 407 163 8 0 chr1 48550655 48550778 -148644654 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 955 216 283 32 32 chr1 48550950 48551012 -148644420 - ID_B1 SINE B4 -67 157 96 5 955 280 350 8 8 chr1 48551500 48551621 -148643811 + MTEa LTR MaLR 258 378 -1 5 955 8950 30 1 38 chr1 48551621 48552766 -148642666 + L1Md_A LINE L1 242 1344 -5380 5 955 14555 11 2 1 chr1 48555333 48557001 -148638431 + L1Md_A LINE L1 3916 5586 -297 5 955 8659 18 1 0 chr1 48557001 48557996 -148637436 + L1Md_A LINE L1 5587 6582 0 5 955 1582 145 4 8 chr1 48558687 48558938 -148636494 - L1_Mur1 LINE L1 -70 5816 5567 5 955 4641 148 33 17 chr1 48558938 48559721 -148635711 + Lx3C LINE L1 6174 6969 -7 5 955 21 0 0 0 chr1 48559793 48559814 -148635618 + AT_rich Low_complexity Low_complexity 1 21 0 5 955 587 207 13 65 chr1 48560349 48560581 -148634851 - Lx9 LINE L1 -2 7642 7423 5 955 794 276 19 11 chr1 48560588 48560848 -148634584 + Lx9 LINE L1 7132 7393 -251 5 955 432 200 0 0 chr1 48561008 48561133 -148634299 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 6 955 4121 149 18 19 chr1 48561424 48562155 -148633277 + Lx2 LINE L1 6268 6997 0 6 955 213 159 0 0 chr1 48562675 48562719 -148632713 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 955 639 264 66 27 chr1 48562719 48562902 -148632530 - B3A SINE B2 -8 190 1 6 955 4475 10 0 0 chr1 48564120 48564613 -148630819 - MT2_Mm LTR ERVL 0 493 1 6 955 23 54 0 0 chr1 48565056 48565093 -148630339 + AT_rich Low_complexity Low_complexity 1 37 0 6 955 397 338 0 43 chr1 48565865 48565888 -148629544 + ID_B1 SINE B4 67 223 -1 6 955 753 207 0 7 chr1 48565888 48566029 -148629403 + B1_Mur3 SINE Alu 9 148 -1 6 955 539 29 14 0 chr1 48566036 48566105 -148629327 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 955 621 0 0 0 chr1 48566322 48566391 -148629041 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 6 955 215 116 47 0 chr1 48566476 48566519 -148628913 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 7 955 660 111 0 0 chr1 48566900 48566999 -148628433 + (TTTC)n Simple_repeat Simple_repeat 4 102 0 7 955 3352 166 62 8 chr1 48567710 48568283 -148627149 - MusHAL1 LINE L1 -1313 1399 804 7 955 387 0 0 0 chr1 48568283 48568326 -148627106 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 955 3352 166 62 8 chr1 48568326 48568481 -148626951 - MusHAL1 LINE L1 -1909 803 634 7 955 4651 146 8 66 chr1 48568481 48569389 -148626043 + Lx2A LINE L1 6153 7007 -1 7 955 433 343 129 16 chr1 48569545 48570117 -148625315 - Lx8 LINE L1 -6 7467 6831 7 955 695 324 66 10 chr1 48570114 48570416 -148625016 - Lx8 LINE L1 -928 6545 6227 7 955 666 0 0 0 chr1 48570446 48570520 -148624912 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 955 189 0 0 0 chr1 48571145 48571166 -148624266 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 7 955 21 0 0 0 chr1 48571505 48571526 -148623906 + AT_rich Low_complexity Low_complexity 1 21 0 7 955 1608 215 34 6 chr1 48571629 48571985 -148623447 + ORR1B2 LTR MaLR 1 366 -1 7 955 917 188 65 33 chr1 48572387 48572601 -148622831 - URR1B DNA MER1_type 0 225 5 8 955 360 306 119 0 chr1 48573939 48574099 -148621333 + MER73 LTR ERVL 11 189 -455 8 955 525 344 95 76 chr1 48574296 48574664 -148620768 + MER54A LTR ERVL 527 901 0 8 955 528 283 103 50 chr1 48575109 48575564 -148619868 + L1M2 LINE L1 2836 3333 -2813 8 955 3406 60 11 0 chr1 48575820 48576271 -148619161 + L1Md_F2 LINE L1 3993 4448 -1435 8 955 1046 76 0 0 chr1 48576268 48576400 -148619032 + L1Md_F2 LINE L1 5455 5586 -297 8 955 7993 43 6 0 chr1 48576400 48577378 -148618054 + L1Md_F2 LINE L1 5587 6570 -12 8 955 24 0 0 0 chr1 48577457 48577481 -148617951 + AT_rich Low_complexity Low_complexity 1 24 0 8 955 328 329 69 32 chr1 48577526 48577743 -148617689 + L1M2 LINE L1 3760 3984 -2162 8 955 262 324 19 0 chr1 48578439 48578547 -148616885 - Lx9 LINE L1 -608 7036 6927 8 955 217 341 0 11 chr1 48578597 48578686 -148616746 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 8 955 2380 313 65 85 chr1 48578831 48579432 -148616000 + Lx5 LINE L1 5864 6451 -599 8 955 537 16 0 0 chr1 48579432 48579494 -148615938 + (GA)n Simple_repeat Simple_repeat 2 63 0 8 955 2380 313 65 85 chr1 48579494 48580101 -148615331 + Lx5 LINE L1 6452 7048 -2 8 955 245 239 0 0 chr1 48580118 48580185 -148615247 + L1MB1 LINE L1 6101 6167 -1 9 955 225 0 0 0 chr1 48580353 48580378 -148615054 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 9 955 645 14 0 0 chr1 48581402 48581476 -148613956 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 955 399 73 0 0 chr1 48582462 48582517 -148612915 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 955 275 163 0 0 chr1 48584229 48584278 -148611154 - Lx6 LINE L1 -230 7230 7182 9 955 994 110 0 0 chr1 48584712 48584848 -148610584 - B1_Mus2 SINE Alu -10 137 2 9 955 1548 222 67 61 chr1 48585063 48585463 -148609969 + RLTR20B3 LTR ERVK 87 470 -107 9 955 647 25 12 0 chr1 48585463 48585544 -148609888 + (TG)n Simple_repeat Simple_repeat 2 83 0 9 955 1548 222 67 61 chr1 48585544 48585618 -148609814 + RLTR20B3 LTR ERVK 471 563 -14 9 955 5803 59 0 3 chr1 48586383 48587118 -148608314 + L1Md_F2 LINE L1 5850 6582 0 9 955 314 280 0 0 chr1 48587213 48587288 -148608144 - Lx8 LINE L1 -232 7241 7167 9 955 249 256 26 0 chr1 48588816 48588894 -148606538 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 955 351 275 45 9 chr1 48588894 48589004 -148606428 - RMER12 LTR ERVK -472 850 737 1 955 969 188 6 0 chr1 48589019 48589195 -148606237 + Lx9 LINE L1 7280 7456 -188 1 955 281 272 0 24 chr1 48589531 48589614 -148605818 + CT-rich Low_complexity Low_complexity 2 82 0 1 955 336 342 60 7 chr1 48589898 48590048 -148605384 - MLT1L LTR MaLR -336 274 117 1 955 200 236 11 0 chr1 48590642 48590731 -148604701 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 955 1432 238 77 21 chr1 48590873 48591251 -148604181 + MTD LTR MaLR 1 399 -20 1 955 336 369 45 25 chr1 48591248 48591448 -148603984 + B4A SINE B4 62 265 -27 1 955 461 307 7 0 chr1 48591679 48591832 -148603600 - Lx5 LINE L1 -410 6640 6487 1 955 1600 245 127 64 chr1 48591861 48592420 -148603012 + RMER19B LTR ERVK 309 902 0 1 955 4055 230 72 27 chr1 48592420 48594124 -148601308 - Lx6 LINE L1 -660 6800 4752 1 955 231 161 0 0 chr1 48594131 48594187 -148601245 + T-rich Low_complexity Low_complexity 1 56 0 1 955 6869 184 19 21 chr1 48594187 48596371 -148599061 + Lx LINE L1 4462 6654 0 1 955 24 32 0 0 chr1 48596888 48596919 -148598513 + AT_rich Low_complexity Low_complexity 1 31 0 1 955 28 48 0 0 chr1 48597032 48597074 -148598358 + AT_rich Low_complexity Low_complexity 1 42 0 1 955 4845 42 20 2 chr1 48597298 48597894 -148597538 - L1Md_F2 LINE L1 -12 6570 5964 1 955 3063 205 63 25 chr1 48597894 48598575 -148596857 - Lx4B LINE L1 -387 6671 5965 1 955 2273 148 13 3 chr1 48598579 48598959 -148596473 + Lx4B LINE L1 5587 5970 -1088 1 955 184 77 25 25 chr1 48599251 48599291 -148596141 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 955 1982 220 39 72 chr1 48599923 48600463 -148594969 - RLTR11A LTR ERVK 0 528 7 1 955 2330 200 87 8 chr1 48600469 48601055 -148594377 - MYSERV16_I-int LTR ERVK 0 2326 1695 1 955 2957 222 26 49 chr1 48601107 48601903 -148593529 - MYSERV16_I-int LTR ERVK -1492 1350 1 1 955 21 36 0 0 chr1 48602063 48602091 -148593341 + AT_rich Low_complexity Low_complexity 1 28 0 1 955 341 250 28 0 chr1 48602105 48602177 -148593255 - B1_Mur3 SINE Alu -12 137 64 1 955 35268 38 2 1 chr1 48602392 48609088 -148586344 + L1Md_T LINE L1 1 5589 -297 1 955 8953 7 0 0 chr1 48609088 48610084 -148585348 + L1Md_T LINE L1 5590 6585 0 1 955 270 235 14 29 chr1 48610648 48610718 -148584714 - RLTR11A LTR ERVK -5 523 455 1 955 462 272 50 102 chr1 48610721 48610971 -148584461 - RLTR11A LTR ERVK -205 323 62 1 955 318 50 0 0 chr1 48611943 48611983 -148583449 + (T)n Simple_repeat Simple_repeat 1 40 0 1 955 1181 68 0 0 chr1 48611993 48612140 -148583292 - B1_Mus2 SINE Alu 0 147 1 1 955 1083 109 56 28 chr1 48612140 48612318 -148583114 - B2_Mm2 SINE B2 -9 186 3 1 955 2086 202 67 28 chr1 48612735 48613198 -148582234 - RLTR16 LTR ERVK 0 505 25 1 955 254 344 134 50 chr1 48613267 48613506 -148581926 + B4A SINE B4 21 279 -13 1 955 315 0 0 0 chr1 48613603 48613638 -148581794 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 955 567 0 0 0 chr1 48613862 48613925 -148581507 + (GAAAA)n Simple_repeat Simple_repeat 4 66 0 1 955 1104 50 0 0 chr1 48614520 48614659 -148580773 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 955 447 92 0 0 chr1 48614699 48614764 -148580668 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 955 251 351 144 33 chr1 48614982 48615135 -148580297 - B3A SINE B2 -25 173 4 1 955 29 60 0 0 chr1 48615340 48615390 -148580042 + AT_rich Low_complexity Low_complexity 1 50 0 1 955 21 36 0 0 chr1 48615435 48615463 -148579969 + AT_rich Low_complexity Low_complexity 1 28 0 1 955 365 342 76 10 chr1 48615930 48616128 -148579304 - RLTR42-int LTR ERVK -116 5406 5196 1 955 456 157 29 0 chr1 48616191 48616261 -148579171 + L1VL4 LINE L1 4 75 -6227 1 955 2260 125 39 22 chr1 48616260 48616718 -148578714 + MusHAL1 LINE L1 171 636 -2076 1 955 5547 102 18 7 chr1 48616713 48617559 -148577873 + MusHAL1 LINE L1 1710 2564 -148 1 955 270 56 0 0 chr1 48618050 48618086 -148577346 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 955 314 371 51 57 chr1 48618151 48618328 -148577104 - B3 SINE B2 -39 177 2 1 955 1348 241 56 35 chr1 48619547 48619887 -148575545 - ORR1B2 LTR MaLR -10 357 11 1 955 378 222 99 19 chr1 48621747 48621958 -148573474 + Lx9 LINE L1 7407 7634 -10 1 955 359 291 130 30 chr1 48622071 48622202 -148573230 + MTE2b LTR MaLR 1 144 -235 1 955 312 217 0 0 chr1 48622208 48622268 -148573164 + MTE2b LTR MaLR 320 379 0 1 955 958 282 75 35 chr1 48622276 48622595 -148572837 + ORR1D1 LTR MaLR 1 332 -42 1 955 206 75 0 48 chr1 48622596 48622638 -148572794 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 955 778 83 190 0 chr1 48622664 48622785 -148572647 + B1_Mus1 SINE Alu 1 144 -4 1 955 573 55 0 0 chr1 48622788 48622861 -148572571 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 955 401 110 14 0 chr1 48623522 48623595 -148571837 + (TCTCCC)n Simple_repeat Simple_repeat 4 77 0 1 955 250 26 25 25 chr1 48624155 48624195 -148571237 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 955 1449 206 47 65 chr1 48624298 48624683 -148570749 - ORR1C1 LTR MaLR 0 378 1 1 955 21 0 0 0 chr1 48624901 48624922 -148570510 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 1180 270 115 8 chr1 48625357 48625723 -148569709 - MTD LTR MaLR -14 405 1 1 955 390 358 66 15 chr1 48625794 48625990 -148569442 + B3 SINE B2 11 216 0 1 955 234 0 0 0 chr1 48626189 48626215 -148569217 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 955 2808 161 46 31 chr1 48626215 48626760 -148568672 - Lx4A LINE L1 -4 7054 6502 1 955 33 0 0 0 chr1 48627271 48627304 -148568128 + AT_rich Low_complexity Low_complexity 1 33 0 1 119 609 304 103 59 chr1 48627654 48628361 -148567071 + BLACKJACK DNA AcHobo 1201 1938 -1006 1 956 4422 168 51 41 chr1 48628511 48629456 -148565976 + RMER17B LTR ERVK 5 958 0 1 956 5231 38 0 0 chr1 48629749 48630381 -148565051 + L1Md_F3 LINE L1 4955 5586 -297 1 956 8285 36 0 3 chr1 48630381 48631368 -148564064 + L1Md_F3 LINE L1 5587 6570 -14 1 956 239 29 57 0 chr1 48632061 48632096 -148563336 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 956 23 0 0 0 chr1 48632140 48632163 -148563269 + AT_rich Low_complexity Low_complexity 1 23 0 1 956 282 331 226 0 chr1 48632163 48632287 -148563145 + B4 SINE B4 71 222 -70 1 956 441 252 8 2 chr1 48632183 48632292 -148563140 + B1_Mus2 SINE Alu 9 120 0 1 956 673 204 74 22 chr1 48633224 48633359 -148562073 + B1_Mur3 SINE Alu 6 147 -2 1 956 459 0 0 0 chr1 48633384 48633435 -148561997 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 956 322 345 45 68 chr1 48633542 48633719 -148561713 + B4A SINE B4 5 177 -115 1 956 1281 263 51 15 chr1 48633745 48634021 -148561411 + ORR1B2 LTR MaLR 19 307 -60 1 956 240 59 0 0 chr1 48634021 48634055 -148561377 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 956 1281 263 51 15 chr1 48634055 48634114 -148561318 + ORR1B2 LTR MaLR 308 366 -1 1 956 248 250 35 70 chr1 48634114 48634200 -148561232 + B4A SINE B4 196 278 -14 1 956 24 67 0 0 chr1 48634322 48634367 -148561065 + AT_rich Low_complexity Low_complexity 1 45 0 1 956 5770 33 22 0 chr1 48634837 48635530 -148559902 + L1Md_T LINE L1 5875 6582 0 1 956 330 179 44 15 chr1 48635530 48635598 -148559834 - URR1B DNA MER1_type 0 225 156 1 956 396 0 0 0 chr1 48635758 48635802 -148559630 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 956 489 58 0 0 chr1 48636774 48636843 -148558589 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 956 237 83 0 0 chr1 48636843 48636879 -148558553 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 956 1004 90 0 0 chr1 48637394 48637528 -148557904 + B1_Mm SINE Alu 1 134 -13 1 956 218 56 0 27 chr1 48637529 48637566 -148557866 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 956 1358 237 26 7 chr1 48637951 48638253 -148557179 - Lx5 LINE L1 0 7050 6743 1 956 3284 38 5 5 chr1 48639025 48639421 -148556011 - MTA_Mm LTR MaLR 0 396 1 1 956 359 183 0 12 chr1 48639549 48639632 -148555800 + CT-rich Low_complexity Low_complexity 2 83 0 1 956 366 333 190 0 chr1 48639668 48639884 -148555548 + Lx8 LINE L1 6864 7120 -353 1 956 321 26 0 0 chr1 48639918 48639956 -148555476 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 956 2037 184 78 2 chr1 48640190 48640588 -148554844 + RLTR25A LTR ERVK 7 434 -669 1 956 2345 116 177 2 chr1 48640929 48641380 -148554052 - RLTR47_MM LTR ERV1 -2 530 1 1 956 1645 281 93 70 chr1 48641387 48641678 -148553754 + RCHARR1 DNA MER1_type 136 414 -560 1 956 739 224 0 7 chr1 48641678 48641826 -148553606 - B1_Mus1 SINE Alu -1 147 1 1 956 1645 281 93 70 chr1 48641826 48642288 -148553144 + RCHARR1 DNA MER1_type 415 906 -68 1 956 2772 241 75 18 chr1 48642715 48643006 -148552426 - RLTR40 LTR ERVK -10 807 500 1 956 201 74 0 0 chr1 48643006 48643033 -148552399 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 956 2772 241 75 18 chr1 48643033 48643505 -148551927 - RLTR40 LTR ERVK -318 499 1 1 956 218 116 0 23 chr1 48643873 48643917 -148551515 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 956 225 0 0 0 chr1 48644170 48644195 -148551237 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 956 426 205 29 78 chr1 48644195 48644401 -148551031 - RMER17C LTR ERVK -135 275 80 1 956 710 272 138 75 chr1 48644430 48644792 -148550640 - RMER10A LTR ERVL -57 385 1 1 956 2101 271 75 44 chr1 48644813 48645476 -148549956 + Lx6 LINE L1 6612 7295 -165 1 956 753 209 169 13 chr1 48645476 48645749 -148549683 + RLTR20A2 LTR ERVK 1 303 -231 1 956 589 262 0 42 chr1 48645742 48645909 -148549523 + RLTR20A2 LTR ERVK 418 577 -1 1 956 1848 78 0 15 chr1 48646044 48646305 -148549127 + L1Md_F2 LINE L1 6316 6572 -10 1 956 247 271 174 18 chr1 48647138 48647247 -148548185 + B4 SINE B4 8 133 -159 1 956 417 39 0 0 chr1 48647386 48647437 -148547995 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 956 569 304 9 80 chr1 48647518 48647743 -148547689 + B3 SINE B2 3 211 -5 1 956 492 18 0 0 chr1 48648400 48648457 -148546975 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 956 306 0 0 0 chr1 48648457 48648490 -148546942 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 956 376 320 28 42 chr1 48648495 48648707 -148546725 - L1MB1 LINE L1 -23 6145 5937 1 956 315 226 32 0 chr1 48648750 48648843 -148546589 - Lx5 LINE L1 -4 7046 6951 2 956 5304 215 41 19 chr1 48648843 48650138 -148545294 - Lx5 LINE L1 -219 6831 5495 2 956 9083 176 45 6 chr1 48650159 48650329 -148545103 - MurERV4_19-int LTR ERVK -2372 3408 3237 2 956 210 37 0 0 chr1 48650329 48650356 -148545076 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 956 9083 176 45 6 chr1 48650356 48651947 -148543485 - MurERV4_19-int LTR ERVK -2544 3236 1579 2 956 473 92 18 35 chr1 48651956 48652069 -148543363 + (TTTTTG)n Simple_repeat Simple_repeat 2 112 0 2 956 339 85 0 0 chr1 48652106 48652153 -148543279 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 2 956 513 107 0 0 chr1 48652153 48652228 -148543204 - B1_Mus2 SINE Alu -2 145 71 2 956 229 284 48 36 chr1 48652157 48652241 -148543191 - ID_B1 SINE B4 -6 218 134 2 956 717 186 19 0 chr1 48652242 48652403 -148543029 - L1_Mur2 LINE L1 -3846 2031 1868 2 956 1854 147 6 48 chr1 48652404 48652734 -148542698 + RMER6A LTR ERVK 1 316 -440 2 956 624 74 0 0 chr1 48652800 48652895 -148542537 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 2 956 893 185 160 5 chr1 48652919 48652968 -148542464 + RMER6A LTR ERVK 516 573 -183 2 956 1739 88 7 55 chr1 48652968 48653243 -148542189 + L1_Mus2 LINE L1 6304 6565 -1 2 956 893 185 160 5 chr1 48653243 48653399 -148542033 + RMER6A LTR ERVK 574 753 -3 2 956 182 105 26 0 chr1 48653410 48653448 -148541984 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 956 483 241 0 0 chr1 48653462 48653570 -148541862 - L1_Mur2 LINE L1 -4008 1872 1765 2 956 378 0 0 0 chr1 48653571 48653613 -148541819 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 956 1153 62 0 0 chr1 48653623 48653769 -148541663 - B1_Mm SINE Alu -1 146 1 2 956 595 93 0 0 chr1 48653770 48653856 -148541576 - 4.5SRNA scRNA scRNA -1 93 8 2 956 2176 206 144 1 chr1 48653863 48654633 -148540799 - L1_Mur2 LINE L1 -4108 1769 890 2 956 222 420 49 0 chr1 48655755 48655836 -148539596 - PB1D10 SINE Alu -30 87 3 2 956 27 29 0 0 chr1 48656598 48656632 -148538800 + AT_rich Low_complexity Low_complexity 1 34 0 2 956 198 0 0 0 chr1 48657168 48657190 -148538242 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 956 204 125 0 0 chr1 48657692 48657724 -148537708 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2 956 2068 204 22 24 chr1 48658183 48658644 -148536788 - RLTR31_Mm LTR ERVK 0 561 102 2 956 7827 176 57 9 chr1 48658667 48661287 -148534145 - Lx2 LINE L1 -4 6993 4217 2 956 522 0 0 0 chr1 48661527 48661585 -148533847 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 956 498 17 0 0 chr1 48661585 48661643 -148533789 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 956 1380 70 0 3 chr1 48663564 48663884 -148531548 + (TCC)n Simple_repeat Simple_repeat 1 319 0 2 956 4081 169 21 12 chr1 48666180 48667016 -148528416 - L1_Mur2 LINE L1 -1723 4154 3311 2 956 2449 176 26 40 chr1 48667029 48667599 -148527833 - MusHAL1 LINE L1 -1352 1360 799 2 956 7161 92 9 6 chr1 48668090 48669487 -148525945 - L1_Mus2 LINE L1 -1 6565 5162 2 956 1109 49 0 0 chr1 48669633 48669777 -148525655 - L1Md_T LINE L1 -1 6581 6438 2 956 8887 175 43 15 chr1 48669867 48672395 -148523037 - L1_Mus2 LINE L1 -2977 2906 306 2 956 335 23 0 22 chr1 48672522 48672567 -148522865 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 956 269 363 55 44 chr1 48672573 48672844 -148522588 + L1MB1 LINE L1 5888 6161 -7 2 956 207 0 0 0 chr1 48672981 48673004 -148522428 + (TAA)n Simple_repeat Simple_repeat 3 25 0 2 956 998 86 0 28 chr1 48673024 48673168 -148522264 - B1_Mm SINE Alu -2 145 6 2 956 27 100 0 0 chr1 48673424 48673514 -148521918 + AT_rich Low_complexity Low_complexity 1 90 0 2 956 187 29 27 54 chr1 48673856 48673893 -148521539 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2 956 2029 60 11 15 chr1 48674864 48675135 -148520297 + L1_Mus1 LINE L1 6297 6566 -1 2 956 1086 74 0 0 chr1 48675193 48675328 -148520104 + B1_Mm SINE Alu 1 135 -12 2 956 1054 78 13 0 chr1 48675328 48675482 -148519950 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 2 956 3324 48 2 0 chr1 48675483 48675895 -148519537 + L1Md_F3 LINE L1 5174 5586 -297 2 956 7583 52 24 0 chr1 48675895 48676856 -148518576 + L1Md_F3 LINE L1 5587 6570 -14 2 956 212 103 0 49 chr1 48676864 48676905 -148518527 + GA-rich Low_complexity Low_complexity 1 39 0 2 956 222 37 0 0 chr1 48678014 48678041 -148517391 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2 956 243 284 0 13 chr1 48678041 48678116 -148517316 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 2 956 247 339 33 42 chr1 48678143 48678263 -148517169 - B3 SINE B2 -97 119 1 2 956 189 0 0 0 chr1 48678492 48678513 -148516919 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 956 469 291 102 38 chr1 48678616 48678909 -148516523 - Lx8 LINE L1 -25 7448 7137 2 956 2344 235 13 29 chr1 48678917 48679443 -148515989 - RMER1B Other Other -3 1063 546 2 956 793 355 61 42 chr1 48679613 48680207 -148515225 + Lx7 LINE L1 6508 7112 -584 2 956 1177 244 40 0 chr1 48680291 48680541 -148514891 + RMER1B Other Other 47 306 -760 2 956 590 200 44 74 chr1 48680563 48680698 -148514734 - RMER21B LTR ERV1 -8 834 704 2 956 2794 216 18 20 chr1 48680702 48681250 -148514182 - RMER21A LTR ERV1 -7 940 394 2 956 353 183 121 12 chr1 48681257 48681340 -148514092 - RMER21A LTR ERV1 -508 439 348 2 956 232 263 113 71 chr1 48681545 48681713 -148513719 + Zaphod2 DNA Tip100 1996 2170 -1354 2 956 911 268 75 124 chr1 48681918 48682110 -148513322 + ORR1D1 LTR MaLR 6 184 -190 2 956 914 117 0 6 chr1 48682110 48682290 -148513142 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 956 911 268 75 124 chr1 48682290 48682485 -148512947 + ORR1D1 LTR MaLR 185 374 0 2 956 355 259 45 18 chr1 48682485 48682595 -148512837 + ORR1D1-int LTR MaLR 2 114 -1256 2 956 1357 247 57 34 chr1 48682589 48682941 -148512491 - ORR1B2 LTR MaLR -7 360 1 2 956 662 272 29 11 chr1 48682945 48683120 -148512312 + ORR1D1-int LTR MaLR 108 285 -1085 2 956 1236 229 141 14 chr1 48683137 48683500 -148511932 + RMER10A LTR ERVL 34 442 0 2 956 1921 285 70 35 chr1 48683500 48684178 -148511254 + ORR1D1-int LTR MaLR 286 987 -383 2 956 1342 211 42 16 chr1 48684194 48684502 -148510930 + ORR1D1-int LTR MaLR 1055 1370 0 2 956 891 226 78 123 chr1 48684506 48684904 -148510528 + ORR1D1 LTR MaLR 5 384 0 2 956 1081 314 42 46 chr1 48684905 48685475 -148509957 + Lx7 LINE L1 6862 7429 -267 2 956 21 57 0 0 chr1 48685622 48685657 -148509775 + AT_rich Low_complexity Low_complexity 1 35 0 2 956 447 254 146 0 chr1 48685795 48685960 -148509472 - RMER1C Other Other -1 1341 1153 2 956 2606 266 109 25 chr1 48686610 48687547 -148507885 - RMER1C Other Other 0 1342 390 2 956 1852 203 98 49 chr1 48687829 48688341 -148507091 - Lx LINE L1 -4 6650 6096 2 956 14719 178 24 12 chr1 48688367 48689567 -148505865 - L1_Mur2 LINE L1 -4 5873 4657 2 956 231 103 0 0 chr1 48689567 48689606 -148505826 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 956 14719 178 24 12 chr1 48689606 48691390 -148504042 - L1_Mur2 LINE L1 -1221 4656 2854 2 956 1544 188 26 10 chr1 48691392 48691698 -148503734 + RMER17D2 LTR ERVK 499 809 0 2 956 1034 142 11 5 chr1 48691698 48691889 -148503543 - L1MD LINE L1 -676 3238 3047 2 956 2338 117 15 0 chr1 48692116 48692459 -148502973 + RLTR1 LTR ERV1 277 624 0 2 956 753 222 0 0 chr1 48692491 48692667 -148502765 + CT-rich Low_complexity Low_complexity 2 177 0 2 956 574 179 22 5 chr1 48692667 48692801 -148502631 - L1MD LINE L1 -3106 3040 2876 2 956 30485 78 6 72 chr1 48692794 48698167 -148497265 - L1Md_F3 LINE L1 0 6584 1628 2 956 2243 136 23 62 chr1 48698167 48698599 -148496833 + RLTR9F LTR ERVK 1 415 0 2 956 30485 93 7 91 chr1 48698599 48699059 -148496373 - L1Md_F3 LINE L1 -4256 1627 1167 2 956 459 0 0 0 chr1 48699059 48699110 -148496322 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 956 2260 195 9 89 chr1 48699110 48699665 -148495767 - L1Md_F3 LINE L1 -5411 1205 668 2 956 5291 115 13 5 chr1 48699751 48701049 -148494383 - L1VL4 LINE L1 -1838 1721 413 2 956 25 51 0 0 chr1 48701081 48701120 -148494312 + AT_rich Low_complexity Low_complexity 1 39 0 2 956 1298 161 4 47 chr1 48701494 48701729 -148493703 + Lx2 LINE L1 6657 6881 -116 2 956 252 340 34 102 chr1 48701881 48702058 -148493374 + RSINE1 SINE B4 1 165 0 2 956 22 35 0 0 chr1 48702058 48702087 -148493345 + AT_rich Low_complexity Low_complexity 1 29 0 2 956 235 331 80 14 chr1 48702835 48702973 -148492459 + L1MEc LINE L1 121 267 -6133 2 956 301 304 85 17 chr1 48703164 48703341 -148492091 + L1MEc LINE L1 566 754 -5646 2 956 678 364 36 39 chr1 48703960 48704400 -148491032 - Lx9 LINE L1 -298 7346 6908 2 956 979 235 77 0 chr1 48704465 48704712 -148490720 - Lx4B LINE L1 -642 6416 6151 2 956 2860 254 124 11 chr1 48704934 48705899 -148489533 - Lx2B LINE L1 -18 6982 5909 2 956 294 98 0 0 chr1 48705899 48705950 -148489482 + (T)n Simple_repeat Simple_repeat 1 51 0 2 956 3080 176 42 7 chr1 48705959 48706617 -148488815 + Lx6 LINE L1 5242 5923 -1537 2 956 22 0 0 0 chr1 48706744 48706766 -148488666 + AT_rich Low_complexity Low_complexity 1 22 0 2 956 399 21 0 0 chr1 48707621 48707669 -148487763 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 956 624 27 0 0 chr1 48707669 48707742 -148487690 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 956 24 53 0 0 chr1 48707808 48707846 -148487586 + AT_rich Low_complexity Low_complexity 1 38 0 2 956 385 342 0 0 chr1 48707980 48708126 -148487306 + Lx8 LINE L1 6732 6877 -596 2 956 825 206 88 141 chr1 48708206 48708546 -148486886 - RLTRETN_Mm LTR ERVK 0 322 1 2 956 644 200 57 0 chr1 48708546 48708686 -148486746 - MMETn-int LTR ERVK 0 4844 4697 2 956 1372 209 59 33 chr1 48708688 48709066 -148486366 - RLTR13B1 LTR ERVK -487 368 2 2 956 1338 163 16 35 chr1 48709082 48709191 -148486241 - ETnERV3-int LTR ERVK -31 5777 5671 2 956 803 44 0 0 chr1 48709191 48709304 -148486128 + L1Md_F3 LINE L1 6458 6570 -14 2 956 1338 163 16 35 chr1 48709304 48709448 -148485984 - ETnERV3-int LTR ERVK -138 5670 5529 2 956 1252 182 13 24 chr1 48709421 48709719 -148485713 - MMETn-int LTR ERVK -957 6449 6227 2 956 5102 187 51 52 chr1 48709738 48712288 -148483144 - MMETn-int LTR ERVK -3321 4085 2356 2 956 6504 126 12 78 chr1 48712312 48713520 -148481912 - MMETn-int LTR ERVK -3714 1130 3 2 956 1029 189 25 164 chr1 48713524 48713891 -148481541 - RLTRETN_Mm LTR ERVK 0 322 7 2 956 369 0 0 0 chr1 48715726 48715767 -148479665 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 956 378 0 0 0 chr1 48715767 48715808 -148479624 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 956 258 81 0 0 chr1 48715936 48715973 -148479459 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 956 337 238 74 17 chr1 48715973 48716148 -148479284 + Lx9 LINE L1 7458 7642 -2 2 956 944 326 63 32 chr1 48716298 48716627 -148478805 - ORR1D2 LTR MaLR -14 365 3 2 956 201 221 22 51 chr1 48716758 48716896 -148478536 + (TAAA)n Simple_repeat Simple_repeat 2 135 0 2 956 426 305 74 41 chr1 48717253 48717523 -148477909 + L1MC3 LINE L1 7406 7684 -101 2 956 189 243 36 108 chr1 48717643 48717726 -148477706 - MIRb SINE MIR -101 167 91 2 956 657 58 0 0 chr1 48718542 48718628 -148476804 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 956 215 227 0 39 chr1 48718634 48718712 -148476720 + A-rich Low_complexity Low_complexity 2 76 0 2 956 1729 321 33 27 chr1 48718729 48719481 -148475951 - Lx7 LINE L1 -345 7351 6595 2 956 396 238 43 65 chr1 48719487 48719626 -148475806 + Lx7 LINE L1 6419 6554 -1142 2 956 189 0 0 0 chr1 48720332 48720353 -148475079 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 956 1309 265 64 56 chr1 48720488 48720749 -148474683 + Lx9 LINE L1 744 1015 -6593 3 956 1030 87 12 12 chr1 48720749 48720913 -148474519 + (GGAAA)n Simple_repeat Simple_repeat 2 165 0 3 956 1309 265 64 56 chr1 48720913 48721037 -148474395 + Lx9 LINE L1 1016 1146 -6462 3 956 366 23 0 0 chr1 48721037 48721080 -148474352 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 956 1309 266 64 28 chr1 48721080 48721658 -148473774 + Lx9 LINE L1 1147 1728 -4119 3 956 2814 116 9 2 chr1 48721718 48722140 -148473292 + Lx3_Mus LINE L1 6581 7005 -4 3 956 1884 262 43 91 chr1 48722157 48722456 -148472976 + Lx9 LINE L1 3712 4016 -1831 3 956 228 35 0 0 chr1 48722456 48722485 -148472947 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 956 1884 262 43 91 chr1 48722485 48723142 -148472290 + Lx9 LINE L1 4017 4622 -1225 3 956 1026 180 70 42 chr1 48723155 48723341 -148472091 - ORR1A3 LTR MaLR -8 318 127 3 956 854 221 183 29 chr1 48723341 48723691 -148471741 - RLTR9E LTR ERVK 0 409 6 3 956 613 243 0 14 chr1 48723705 48723851 -148471581 - ORR1A3 LTR MaLR -200 146 3 3 956 1344 311 12 44 chr1 48723855 48724443 -148470989 + Lx9 LINE L1 4631 5199 -648 3 956 507 309 112 25 chr1 48724456 48724778 -148470654 - RLTR15 LTR ERVK -9 350 1 3 956 1828 207 19 12 chr1 48724778 48725199 -148470233 - MYSERV-int LTR ERVK 0 6550 6127 3 956 8047 170 16 48 chr1 48725213 48727830 -148467602 + Lx2 LINE L1 4196 6713 -284 3 956 967 101 177 35 chr1 48727830 48728056 -148467376 - IAPLTR2_Mm LTR ERVK 0 475 218 3 956 187 225 0 43 chr1 48728061 48728154 -148467278 + GA-rich Low_complexity Low_complexity 3 91 0 3 956 1650 145 117 20 chr1 48728154 48728512 -148466920 - IAPLTR2_Mm LTR ERVK -82 393 1 3 956 6227 38 3 7 chr1 48728512 48729261 -148466171 - IAPEz-int LTR ERVK 0 6481 5736 3 956 2218 68 0 0 chr1 48729260 48729538 -148465894 - IAPEz-int LTR ERVK -4845 1636 1359 3 956 3555 98 23 25 chr1 48729538 48730400 -148465032 - IAPEz-int LTR ERVK -5819 662 3 3 956 956 106 177 35 chr1 48730402 48730628 -148464804 - IAPLTR2_Mm LTR ERVK 0 475 218 3 956 187 225 0 43 chr1 48730633 48730726 -148464706 + GA-rich Low_complexity Low_complexity 3 91 0 3 956 1577 147 121 20 chr1 48730726 48731074 -148464358 - IAPLTR2_Mm LTR ERVK -82 393 11 3 956 1561 173 50 0 chr1 48731074 48731357 -148464075 + Lx LINE L1 6349 6645 -9 3 956 493 269 16 31 chr1 48731362 48731554 -148463878 + Lx9 LINE L1 5777 5965 -1679 3 956 502 54 0 26 chr1 48731746 48731822 -148463610 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 3 956 317 326 15 15 chr1 48731877 48732014 -148463418 + Lx9 LINE L1 6347 6483 -1161 3 956 731 299 50 33 chr1 48732039 48732340 -148463092 + Lx9 LINE L1 7073 7378 -266 3 956 1130 95 0 0 chr1 48732762 48732910 -148462522 + B1_Mus1 SINE Alu 1 148 0 3 956 354 183 0 0 chr1 48732923 48732994 -148462438 + A-rich Low_complexity Low_complexity 1 71 0 3 956 21 82 0 0 chr1 48733031 48733080 -148462352 + AT_rich Low_complexity Low_complexity 1 49 0 3 956 42 48 0 0 chr1 48734269 48734332 -148461100 + AT_rich Low_complexity Low_complexity 1 63 0 3 956 699 83 0 0 chr1 48734457 48734565 -148460867 + (TCTA)n Simple_repeat Simple_repeat 2 109 0 3 956 387 0 0 0 chr1 48734571 48734614 -148460818 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 956 228 290 8 16 chr1 48734815 48734941 -148460491 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 3 956 1448 229 88 32 chr1 48735063 48735489 -148459943 + RMER20A LTR ERVK 10 516 0 3 956 334 348 28 7 chr1 48735492 48735634 -148459798 - Lx9 LINE L1 -254 7390 7246 3 956 291 305 16 85 chr1 48735674 48735803 -148459629 - Lx9 LINE L1 -533 7111 6992 3 956 482 225 4 1 chr1 48735836 48735942 -148459490 + ORR1D1 LTR MaLR 1 108 -276 3 956 833 306 22 26 chr1 48736255 48736527 -148458905 + ORR1D1 LTR MaLR 102 372 -2 3 956 565 280 34 0 chr1 48736532 48736707 -148458725 - Lx9 LINE L1 -692 6952 6772 3 956 2104 225 98 46 chr1 48737079 48737883 -148457549 - RLTR22_Mur LTR ERVK -831 977 97 3 956 968 100 0 21 chr1 48737873 48738016 -148457416 - B1_Mm SINE Alu 0 147 8 3 956 263 302 9 70 chr1 48738045 48738159 -148457273 - RLTR22_Mur LTR ERVK -1741 107 1 3 956 614 47 0 0 chr1 48738404 48738489 -148456943 + L1Md_A LINE L1 6498 6582 0 3 956 319 108 47 24 chr1 48738530 48738615 -148456817 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 3 956 1460 302 47 70 chr1 48738615 48739673 -148455759 + Lx9 LINE L1 4904 5971 -1673 3 956 351 0 0 0 chr1 48739909 48739948 -148455484 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 956 423 152 0 0 chr1 48739967 48740046 -148455386 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 956 2124 36 0 0 chr1 48740070 48740322 -148455110 - L1Md_T LINE L1 -1 6581 6330 3 956 395 365 39 0 chr1 48740323 48740531 -148454901 + Lx9 LINE L1 6327 6542 -1102 3 956 550 376 28 28 chr1 48740574 48740828 -148454604 + Lx5 LINE L1 6797 7050 0 3 956 839 125 59 59 chr1 48740989 48741159 -148454273 - RLTR11B LTR ERVK 0 453 284 3 956 565 252 154 53 chr1 48741209 48741456 -148453976 + RLTR10A LTR ERVK 140 411 0 3 956 1215 198 41 51 chr1 48741456 48741749 -148453683 - RLTR11B LTR ERVK -163 290 1 3 956 1289 199 39 39 chr1 48741750 48742085 -148453347 - MYSERV-int LTR ERVK 0 6550 6216 3 956 553 90 13 0 chr1 48742095 48742173 -148453259 - MYSERV16_I-int LTR ERVK -494 1832 1754 3 956 4775 22 0 0 chr1 48742173 48742729 -148452703 + L1Md_T LINE L1 5031 5586 -297 3 956 8226 38 7 0 chr1 48742729 48743718 -148451714 + L1Md_T LINE L1 5587 6582 0 3 956 1905 124 42 0 chr1 48743823 48744130 -148451302 + RLTR22_Mur LTR ERVK 494 813 -1035 3 956 216 0 0 0 chr1 48744130 48744154 -148451278 + (T)n Simple_repeat Simple_repeat 1 24 0 3 956 1310 157 39 24 chr1 48744353 48744607 -148450825 + RLTR22_Mur LTR ERVK 1591 1848 0 3 956 6020 176 26 12 chr1 48744608 48746156 -148449276 - Lx2 LINE L1 -761 6236 4670 3 956 37959 41 0 2 chr1 48746152 48752366 -148443066 - L1Md_T LINE L1 -1 6584 288 3 956 335 149 58 29 chr1 48752366 48752435 -148442997 - RLTR16 LTR ERVK -102 403 333 3 956 1694 174 26 6 chr1 48752466 48752807 -148442625 - Lx2 LINE L1 -1200 4683 4336 3 956 7190 125 25 10 chr1 48752804 48754066 -148441366 - L1VL4 LINE L1 -1414 2145 860 3 956 903 115 67 0 chr1 48754066 48754231 -148441201 - Lx LINE L1 0 6654 6479 3 956 593 114 284 18 chr1 48754231 48754303 -148441129 - L1VL4 LINE L1 -5443 859 774 3 956 58 28 0 0 chr1 48754376 48754448 -148440984 + AT_rich Low_complexity Low_complexity 1 72 0 3 956 2038 230 144 88 chr1 48754854 48755835 -148439597 - RMER17B LTR ERVK -9 899 1 3 956 1608 194 125 17 chr1 48755863 48756272 -148439160 - RLTR11B LTR ERVK 0 453 1 3 956 23 0 0 0 chr1 48756333 48756356 -148439076 + AT_rich Low_complexity Low_complexity 1 23 0 3 956 28 29 0 0 chr1 48756794 48756829 -148438603 + AT_rich Low_complexity Low_complexity 1 35 0 3 956 25 0 0 0 chr1 48756879 48756904 -148438528 + AT_rich Low_complexity Low_complexity 1 25 0 3 956 6667 142 30 10 chr1 48757150 48758272 -148437160 + Lx2A1 LINE L1 5862 7006 -2 3 956 534 31 0 0 chr1 48758299 48758363 -148437069 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 956 1123 96 0 0 chr1 48758496 48758642 -148436790 - B1_Mm SINE Alu 0 147 2 3 957 339 25 0 0 chr1 48758894 48758934 -148436498 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 957 12520 63 22 1 chr1 48759567 48761220 -148434212 + L1Md_F2 LINE L1 3899 5586 -297 3 957 8294 36 2 0 chr1 48761221 48762211 -148433221 + L1Md_F2 LINE L1 5588 6579 -3 3 957 438 289 17 117 chr1 48762220 48762400 -148433032 + RSINE1 SINE B4 3 164 -1 3 957 259 244 11 23 chr1 48762402 48762490 -148432942 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 957 569 212 3 34 chr1 48762505 48762803 -148432629 + (CA)n Simple_repeat Simple_repeat 1 288 0 3 957 432 0 0 0 chr1 48762807 48762855 -148432577 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 957 207 0 0 0 chr1 48762855 48762877 -148432555 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 957 471 298 145 16 chr1 48762877 48762962 -148432470 + RLTR15 LTR ERVK 14 98 -261 3 957 486 0 0 0 chr1 48762962 48763016 -148432416 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 957 471 298 145 16 chr1 48763016 48763172 -148432260 + RLTR15 LTR ERVK 99 285 -74 3 957 298 278 7 29 chr1 48763254 48763391 -148432041 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 957 21 36 0 0 chr1 48764130 48764158 -148431274 + AT_rich Low_complexity Low_complexity 1 28 0 3 957 27 29 0 0 chr1 48764280 48764314 -148431118 + AT_rich Low_complexity Low_complexity 1 34 0 3 957 829 220 120 37 chr1 48764923 48765200 -148430232 - RMER13B LTR ERVK 0 908 384 3 957 2020 93 9 28 chr1 48765200 48765542 -148429890 - L1_Mus3 LINE L1 0 6638 6322 3 957 37846 42 0 3 chr1 48765942 48772203 -148423229 - L1Md_T LINE L1 0 6585 247 3 957 2615 132 13 2 chr1 48772215 48772609 -148422823 - RMER13B LTR ERVK -510 398 1 3 957 1066 233 266 21 chr1 48773333 48773671 -148421761 - MTC LTR MaLR 0 421 1 3 957 712 218 7 7 chr1 48773877 48774020 -148421412 - B1_Mur4 SINE Alu -1 149 7 3 957 434 213 7 99 chr1 48773919 48774060 -148421372 - MT2B LTR ERVL -343 258 131 3 957 348 83 0 0 chr1 48774519 48774567 -148420865 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 957 245 231 26 0 chr1 48774573 48774651 -148420781 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 957 21 57 0 0 chr1 48775059 48775094 -148420338 + AT_rich Low_complexity Low_complexity 1 35 0 3 957 869 257 24 32 chr1 48775118 48775367 -148420065 + Lx7 LINE L1 7125 7371 -325 3 957 337 256 91 111 chr1 48775978 48776031 -148419401 - B2_Mm2 SINE B2 -1 194 157 3 957 387 0 0 0 chr1 48776031 48776074 -148419358 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 957 527 256 91 111 chr1 48776074 48776218 -148419214 - B3A SINE B2 -39 156 1 3 957 749 262 34 24 chr1 48776485 48776692 -148418740 + MT2A LTR ERVL 26 234 -299 3 957 873 142 30 0 chr1 48779359 48779493 -148415939 - B1_Mus1 SINE Alu -10 138 1 3 957 308 313 64 58 chr1 48779865 48780038 -148415394 + ERVL-E-int LTR ERVL 2506 2679 -2988 3 957 1017 95 0 0 chr1 48781080 48781227 -148414205 + (TTCTC)n Simple_repeat Simple_repeat 3 149 0 3 957 378 107 0 0 chr1 48781227 48781283 -148414149 + (TCC)n Simple_repeat Simple_repeat 3 58 0 3 957 645 80 0 0 chr1 48781283 48781371 -148414061 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 957 434 223 0 0 chr1 48781496 48781590 -148413842 + Lx4B LINE L1 2408 2501 -3385 3 957 13078 186 38 45 chr1 48781587 48785874 -148409558 + Lx4B LINE L1 2809 7057 -1 3 957 627 210 16 0 chr1 48787103 48787227 -148408205 - MTC LTR MaLR -97 324 199 3 957 1149 99 0 0 chr1 48787227 48787477 -148407955 + (TTTC)n Simple_repeat Simple_repeat 1 250 0 3 957 180 0 0 0 chr1 48787868 48787888 -148407544 + (TATG)n Simple_repeat Simple_repeat 1 20 0 3 957 304 89 17 35 chr1 48788066 48788124 -148407308 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 3 957 422 266 78 8 chr1 48789693 48789708 -148405724 - HAL1-2a_MD LINE L1 -519 2505 2491 3 957 558 0 0 0 chr1 48789708 48789770 -148405662 + (TCC)n Simple_repeat Simple_repeat 3 64 0 3 957 422 266 78 8 chr1 48789770 48789883 -148405549 - HAL1-2a_MD LINE L1 -534 2490 2368 3 957 2729 82 5 10 chr1 48789974 48790357 -148405075 - L1Md_F2 LINE L1 -14 6568 6188 3 957 219 145 43 0 chr1 48791511 48791580 -148403852 + (TAA)n Simple_repeat Simple_repeat 1 72 0 3 957 288 329 81 35 chr1 48791706 48791879 -148403553 - Lx8 LINE L1 -213 7260 7080 3 957 540 195 18 0 chr1 48791953 48792066 -148403366 + RMER1C Other Other 1228 1342 0 3 957 21 0 0 0 chr1 48792215 48792236 -148403196 + AT_rich Low_complexity Low_complexity 1 21 0 3 957 1237 351 41 62 chr1 48792433 48793258 -148402174 - Lx8 LINE L1 -451 7022 6215 3 957 279 0 0 0 chr1 48793258 48793289 -148402143 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 957 1132 56 7 0 chr1 48793292 48793434 -148401998 - B1_Mm SINE Alu -4 143 1 3 957 1237 351 41 62 chr1 48793434 48793507 -148401925 - Lx8 LINE L1 -1259 6214 6139 3 957 3271 39 3 0 chr1 48794648 48795032 -148400400 - IAPEY_LTR LTR ERVK 0 385 1 3 957 21743 47 3 6 chr1 48795032 48797751 -148397681 - IAPEy-int LTR ERVK 0 7513 4804 3 957 2864 127 12 21 chr1 48797751 48798430 -148397002 - IAPEy-int LTR ERVK -6455 1058 1 3 957 3208 47 3 0 chr1 48798430 48798814 -148396618 - IAPEY_LTR LTR ERVK 0 385 1 3 957 28988 105 5 5 chr1 48799092 48800416 -148395016 - L1_Mus2 LINE L1 0 6566 5303 4 957 1045 97 14 0 chr1 48800416 48800561 -148394871 - B1_Mus2 SINE Alu 0 147 1 4 957 28988 134 7 27 chr1 48800561 48805142 -148390290 - L1_Mus2 LINE L1 -581 5302 773 4 957 425 200 70 62 chr1 48805171 48805299 -148390133 - L1_Mus2 LINE L1 -5813 803 675 4 957 486 301 78 24 chr1 48805322 48805618 -148389814 - L1VL2 LINE L1 -5933 402 91 4 957 630 326 175 32 chr1 48806322 48806756 -148388676 - MT2A LTR ERVL -2 531 36 4 957 522 0 0 0 chr1 48806789 48806847 -148388585 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 957 659 286 71 0 chr1 48807221 48807417 -148388015 + B3 SINE B2 1 210 -6 4 957 225 222 127 0 chr1 48808955 48809018 -148386414 - RSINE1 SINE B4 -40 125 55 4 957 314 387 66 0 chr1 48809221 48809358 -148386074 - ID_B1 SINE B4 0 224 79 4 957 640 266 84 34 chr1 48812050 48812287 -148383145 + Lx6 LINE L1 7017 7265 -195 4 957 2841 224 84 91 chr1 48812287 48813215 -148382217 - RLTR25B LTR ERVK 0 1103 2 4 957 598 265 11 23 chr1 48813220 48813394 -148382038 + Lx6 LINE L1 7260 7431 -29 4 957 918 235 31 35 chr1 48813507 48813767 -148381665 - Lx9 LINE L1 -199 7445 7187 4 957 322 323 132 54 chr1 48814041 48814283 -148381149 + RMER15 LTR ERVL 301 561 -14 4 957 576 299 129 44 chr1 48814698 48815038 -148380394 + ORR1D2 LTR MaLR 1 369 -1 4 957 23 0 0 0 chr1 48815041 48815064 -148380368 + AT_rich Low_complexity Low_complexity 1 23 0 4 957 429 20 0 0 chr1 48815371 48815421 -148380011 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 957 1712 214 114 15 chr1 48815425 48815881 -148379551 - Lx9 LINE L1 -181 7463 6963 4 957 21 36 0 0 chr1 48816154 48816182 -148379250 + AT_rich Low_complexity Low_complexity 1 28 0 4 957 1849 242 15 83 chr1 48816766 48817383 -148378049 + RMER15 LTR ERVL 1 575 0 4 957 438 322 7 7 chr1 48817648 48817792 -148377640 + B1_Mur1 SINE Alu 4 147 -2 4 957 2044 205 69 26 chr1 48817812 48818318 -148377114 - RLTR12B LTR ERVK 0 528 1 4 957 422 395 45 43 chr1 48818608 48818960 -148376472 + MTD LTR MaLR 23 375 -44 4 957 2538 214 25 30 chr1 48819004 48819571 -148375861 - RLTR20B3 LTR ERVK 0 577 14 4 957 6511 72 14 4 chr1 48819902 48820803 -148374629 - L1Md_F2 LINE L1 -1003 4880 3971 4 957 5067 80 6 4 chr1 48820804 48821507 -148373925 + L1Md_F2 LINE L1 4883 5586 -297 4 957 7428 78 2 3 chr1 48821507 48822503 -148372929 + L1Md_F2 LINE L1 5587 6581 -1 4 957 2220 48 14 7 chr1 48822812 48823104 -148372328 + L1Md_F3 LINE L1 6291 6584 0 4 957 26 64 0 0 chr1 48823283 48823330 -148372102 + AT_rich Low_complexity Low_complexity 1 47 0 4 957 312 284 46 100 chr1 48823443 48823682 -148371750 + MT2A LTR ERVL 47 272 -261 4 957 23 54 0 0 chr1 48823701 48823738 -148371694 + AT_rich Low_complexity Low_complexity 1 37 0 4 957 432 0 0 0 chr1 48825036 48825084 -148370348 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 957 796 211 87 36 chr1 48825330 48825483 -148369949 - Lx9 LINE L1 -11 7633 7448 4 957 1504 204 48 0 chr1 48825483 48825796 -148369636 - ORR1A4 LTR MaLR 0 329 2 4 957 796 263 63 26 chr1 48825796 48826023 -148369409 - Lx9 LINE L1 -197 7447 7206 4 957 2999 185 52 11 chr1 48826385 48826663 -148368769 + RMER6A LTR ERVK 90 375 -381 4 957 243 0 0 0 chr1 48826663 48826690 -148368742 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 957 2999 185 52 11 chr1 48826690 48827040 -148368392 + RMER6A LTR ERVK 376 743 -13 4 957 658 295 65 62 chr1 48827055 48827463 -148367969 - LTR81B LTR ERV1? -929 421 7 4 957 553 311 12 0 chr1 48827826 48827987 -148367445 - Lx9 LINE L1 -1066 6578 6416 4 957 5313 112 14 74 chr1 48827990 48828954 -148366478 + RMER17A2 LTR ERVK 1 906 0 4 957 429 20 0 0 chr1 48828964 48829014 -148366418 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 957 455 301 33 28 chr1 48829263 48829444 -148365988 - Lx9 LINE L1 -1677 5967 5786 4 957 465 19 0 0 chr1 48829456 48829510 -148365922 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 957 892 258 50 13 chr1 48829540 48829860 -148365572 - ORR1C1 LTR MaLR 0 378 60 4 957 4877 158 51 1 chr1 48829861 48830687 -148364745 - Lx LINE L1 -138 6516 5650 4 957 451 184 0 22 chr1 48830687 48830776 -148364656 - ORR1C1 LTR MaLR -292 92 6 4 957 3508 275 93 47 chr1 48830781 48832805 -148362627 - Lx9 LINE L1 -180 5667 3552 4 957 983 80 7 0 chr1 48832919 48833057 -148362375 - B1_Mus1 SINE Alu -1 147 9 4 957 394 220 39 78 chr1 48832945 48833073 -148362359 - MT2B LTR ERVL -323 278 156 4 957 1579 284 64 70 chr1 48833073 48834262 -148361170 - Lx9 LINE L1 -2396 3451 2270 4 957 863 309 81 46 chr1 48834335 48835436 -148359996 - L1_Rod LINE L1 -631 5216 4078 4 957 204 40 0 0 chr1 48835461 48835486 -148359946 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 957 2392 148 0 3 chr1 48835489 48835881 -148359551 - Lx LINE L1 -12 6642 6252 4 957 3029 187 2 7 chr1 48835883 48836491 -148358941 + L1_Mur2 LINE L1 4354 4958 -919 4 957 1414 230 88 59 chr1 48836509 48836930 -148358502 + RLTR31A_Mm LTR ERVK 8 440 -144 4 957 4442 116 5 1 chr1 48836959 48837605 -148357827 - L1_Mus2 LINE L1 0 6566 5919 4 957 705 66 0 0 chr1 48837605 48837696 -148357736 + RLTR13B1 LTR ERVK 800 890 -3 4 957 1426 34 0 0 chr1 48837699 48837874 -148357558 - L1_Mus2 LINE L1 -641 5925 5751 4 957 1491 297 184 21 chr1 48837972 48839320 -148356112 + Arthur1 DNA Tip100 1915 3482 -465 4 957 1850 48 9 0 chr1 48839338 48839569 -148355863 + L1Md_F3 LINE L1 6337 6569 -15 4 957 300 53 0 0 chr1 48840438 48840476 -148354956 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 957 4255 41 0 2 chr1 48841483 48841997 -148353435 - L1Md_T LINE L1 -2 6580 6068 4 957 253 24 48 24 chr1 48842198 48842240 -148353192 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 957 22 0 0 0 chr1 48842537 48842559 -148352873 + AT_rich Low_complexity Low_complexity 1 22 0 4 957 931 145 151 8 chr1 48842651 48842902 -148352530 - Lx9 LINE L1 -6 7638 7352 4 957 299 331 101 34 chr1 48843121 48843299 -148352133 + MLT1B LTR MaLR 199 388 -2 4 957 23 0 0 0 chr1 48843994 48844017 -148351415 + AT_rich Low_complexity Low_complexity 1 23 0 4 957 652 333 52 58 chr1 48844178 48844864 -148350568 - L1MC3 LINE L1 -219 7566 6885 4 957 191 36 0 35 chr1 48844911 48844940 -148350492 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 957 5224 158 13 16 chr1 48845151 48846076 -148349356 - Lx LINE L1 -7 6647 5726 4 957 1719 204 3 0 chr1 48846076 48846420 -148349012 + L1_Mur2 LINE L1 4917 5261 -616 4 957 1619 135 14 11 chr1 48846430 48846715 -148348717 - RMER17D2 LTR ERVK 0 809 524 4 957 2301 183 19 42 chr1 48846715 48847193 -148348239 + L1_Mur2 LINE L1 5271 5737 -140 4 957 2118 247 43 28 chr1 48847176 48847775 -148347657 + Lx2B LINE L1 6380 6987 -13 4 957 240 35 0 0 chr1 48847818 48847847 -148347585 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 957 653 257 77 0 chr1 48847849 48848032 -148347400 - Lx6 LINE L1 -716 6744 6548 4 957 23 33 0 0 chr1 48848977 48849007 -148346425 + AT_rich Low_complexity Low_complexity 1 30 0 4 957 21 36 0 0 chr1 48850406 48850434 -148344998 + AT_rich Low_complexity Low_complexity 1 28 0 4 957 23 0 0 0 chr1 48850535 48850558 -148344874 + AT_rich Low_complexity Low_complexity 1 23 0 4 957 1216 274 97 6 chr1 48850663 48851129 -148344303 + Lx9 LINE L1 7130 7637 -7 4 957 582 283 62 55 chr1 48851819 48852092 -148343340 - Lx7 LINE L1 -284 7412 7138 4 957 423 0 0 0 chr1 48852116 48852163 -148343269 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 957 983 250 153 20 chr1 48852163 48852375 -148343057 - Lx9 LINE L1 -165 7479 7264 4 957 186 43 0 0 chr1 48852375 48852398 -148343034 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 957 983 250 153 20 chr1 48852398 48852532 -148342900 - Lx9 LINE L1 -381 7263 7089 4 957 21 36 0 0 chr1 48853516 48853544 -148341888 + AT_rich Low_complexity Low_complexity 1 28 0 4 957 204 135 0 0 chr1 48853780 48853817 -148341615 + (A)n Simple_repeat Simple_repeat 1 37 0 4 957 1099 67 0 0 chr1 48854197 48854332 -148341100 + B1_Mus1 SINE Alu 1 135 -13 4 957 213 39 0 0 chr1 48854334 48854360 -148341072 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 957 30 27 0 0 chr1 48856537 48856574 -148338858 + AT_rich Low_complexity Low_complexity 1 37 0 4 957 810 299 63 5 chr1 48856636 48857019 -148338413 - L1MC LINE L1 -2043 4103 3699 4 957 293 304 36 0 chr1 48857215 48857327 -148338105 + L1MC LINE L1 3535 3650 -2496 4 957 26 30 0 0 chr1 48857510 48857543 -148337889 + AT_rich Low_complexity Low_complexity 1 33 0 4 957 21 71 0 0 chr1 48857658 48857700 -148337732 + AT_rich Low_complexity Low_complexity 1 42 0 4 957 951 306 17 49 chr1 48857925 48858275 -148337157 + L1VL4 LINE L1 6 344 -5958 4 957 680 134 0 0 chr1 48858276 48858403 -148337029 + MusHAL1 LINE L1 179 305 -2407 4 957 3080 18 2 116 chr1 48858407 48858847 -148336585 + RLTR10 LTR ERVK 1 390 0 4 957 579 55 0 0 chr1 48858847 48858920 -148336512 + MMERVK10C-int LTR ERVK 1 73 -7508 4 957 1087 29 7 0 chr1 48858920 48859056 -148336376 - IAPLTR1a_Mm LTR ERVK -200 137 1 4 957 7443 28 9 6 chr1 48859056 48860435 -148334997 - IAPEz-int LTR ERVK 0 6481 5070 4 957 1052 36 7 7 chr1 48860437 48860575 -148334857 - IAPLTR1a_Mm LTR ERVK -199 138 1 4 957 9068 120 20 11 chr1 48860585 48862101 -148333331 + MusHAL1 LINE L1 314 1843 -869 4 957 4423 206 23 14 chr1 48862100 48862304 -148333128 + L1_Mm LINE L1 4424 4640 -1243 4 957 255 31 0 0 chr1 48862304 48862336 -148333096 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 4 957 4423 206 23 14 chr1 48862336 48863146 -148332286 + L1_Mm LINE L1 4641 5446 -437 4 957 1952 145 75 10 chr1 48863146 48863530 -148331902 + Lx LINE L1 6244 6652 -2 4 957 2378 182 16 4 chr1 48863530 48863725 -148331707 - L1_Mur2 LINE L1 -950 4927 4728 4 957 253 47 47 0 chr1 48863725 48863768 -148331664 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 957 2378 182 16 4 chr1 48863768 48864057 -148331375 - L1_Mur2 LINE L1 -1150 4727 4437 4 957 2570 167 0 2 chr1 48864054 48864509 -148330923 + L1_Mur2 LINE L1 3996 4449 -1428 4 957 1135 282 138 16 chr1 48864503 48865119 -148330313 + Lx6 LINE L1 6764 7454 -6 4 957 2820 185 35 11 chr1 48865272 48865955 -148329477 + L1_Mur1 LINE L1 4382 5021 -1119 4 957 352 272 29 160 chr1 48865961 48866167 -148329265 + L1VL1 LINE L1 223 401 -6021 4 957 462 264 167 6 chr1 48866154 48866322 -148329110 + L1Md_F LINE L1 512 706 -5813 4 957 2626 151 11 6 chr1 48866330 48867190 -148328242 + L1Md_F LINE L1 628 1496 -2321 4 957 4761 63 0 0 chr1 48867189 48867793 -148327639 - L1Md_F2 LINE L1 -360 6222 5619 4 957 2631 72 0 25 chr1 48867793 48868151 -148327281 + L1Md_F2 LINE L1 6220 6568 -14 4 957 1138 238 191 20 chr1 48868185 48868678 -148326754 + Lx7 LINE L1 5834 6410 -1286 4 957 204 135 27 0 chr1 48868732 48868769 -148326663 + A-rich Low_complexity Low_complexity 2 39 0 4 957 276 190 17 17 chr1 48868772 48868831 -148326601 + Lx9 LINE L1 7094 7152 -492 4 957 234 288 37 24 chr1 48869561 48869643 -148325789 - MLT1C LTR MaLR -29 438 356 4 957 567 371 9 18 chr1 48869948 48870291 -148325141 - Lx8 LINE L1 -116 7357 7018 5 957 384 310 7 80 chr1 48870492 48870629 -148324803 + ID_B1 SINE B4 82 208 -16 5 957 420 37 0 0 chr1 48871130 48871184 -148324248 + (A)n Simple_repeat Simple_repeat 1 54 0 5 957 1497 237 27 8 chr1 48871187 48871830 -148323602 + Lx5 LINE L1 910 1569 -4308 5 957 34609 55 1 4 chr1 48871825 48877273 -148318159 + L1Md_T LINE L1 66 5589 -297 5 957 8178 43 1 0 chr1 48877273 48878268 -148317164 + L1Md_T LINE L1 5590 6585 0 5 957 3422 223 128 20 chr1 48878298 48879564 -148315868 + Lx5 LINE L1 1557 2959 -2918 5 957 35822 38 3 7 chr1 48879563 48884761 -148310671 + L1Md_T LINE L1 416 5586 -297 5 957 8310 37 0 0 chr1 48884761 48885756 -148309676 + L1Md_T LINE L1 5587 6581 -1 5 957 4394 217 79 72 chr1 48885774 48887031 -148308401 + Lx5 LINE L1 2947 4216 -1661 5 957 4158 93 0 2 chr1 48887031 48887593 -148307839 - L1_Mus1 LINE L1 -1 6566 6006 5 957 4394 217 79 72 chr1 48887593 48887846 -148307586 + Lx5 LINE L1 4217 4467 -1410 5 957 1881 204 51 7 chr1 48887848 48888296 -148307136 + Lx5 LINE L1 5221 5688 -189 5 957 1220 262 47 80 chr1 48888296 48888744 -148306688 + RLTR11A LTR ERVK 1 433 -95 5 957 210 71 0 0 chr1 48888745 48888773 -148306659 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 957 189 0 0 0 chr1 48888773 48888794 -148306638 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 957 1885 264 31 48 chr1 48888863 48889504 -148305928 + Lx5 LINE L1 5689 6318 -732 5 957 1245 64 19 0 chr1 48889536 48889693 -148305739 + L1_Mm LINE L1 5483 5642 -241 5 119 3054 264 20 16 chr1 48889683 48890419 -148305013 + Lx5 LINE L1 6304 7042 -8 5 958 198 71 0 0 chr1 48891442 48891470 -148303962 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 958 486 0 0 0 chr1 48891470 48891524 -148303908 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 958 266 372 35 0 chr1 48891530 48891616 -148303816 - PB1D10 SINE Alu -27 90 2 5 958 21 0 0 0 chr1 48891659 48891680 -148303752 + AT_rich Low_complexity Low_complexity 1 21 0 5 958 22 0 0 0 chr1 48891692 48891714 -148303718 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 226 272 114 0 chr1 48892957 48893071 -148302361 - Charlie10 DNA MER1_type -258 2564 2438 5 958 24 0 0 0 chr1 48893253 48893277 -148302155 + AT_rich Low_complexity Low_complexity 1 24 0 5 958 1398 229 8 0 chr1 48893678 48893940 -148301492 - MTC LTR MaLR 0 421 158 5 958 1123 174 29 12 chr1 48893963 48894207 -148301225 - RLTR28 LTR ERVL -41 483 236 5 958 477 240 161 38 chr1 48894319 48894505 -148300927 + RMER13A LTR ERVK 236 444 -416 5 958 384 114 167 22 chr1 48894687 48894777 -148300655 + L1_Mur2 LINE L1 5259 5361 -516 5 958 956 204 128 34 chr1 48894781 48895015 -148300417 - RLTR28 LTR ERVL -268 256 1 5 958 576 185 46 0 chr1 48895019 48895149 -148300283 - MTC LTR MaLR -285 136 1 5 958 432 200 0 0 chr1 48895353 48895463 -148299969 + CT-rich Low_complexity Low_complexity 4 113 0 5 958 598 289 83 34 chr1 48895508 48895834 -148299598 - Lx9 LINE L1 -9 7635 7294 5 958 24 53 0 0 chr1 48895852 48895890 -148299542 + AT_rich Low_complexity Low_complexity 1 38 0 5 958 914 26 0 9 chr1 48895907 48896021 -148299411 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 5 958 7938 157 17 11 chr1 48896021 48897645 -148297787 + Lx2 LINE L1 5363 6996 -1 5 958 749 290 20 0 chr1 48898731 48898931 -148296501 + Lx9 LINE L1 7095 7298 -346 5 958 568 174 0 16 chr1 48899063 48899186 -148296246 + (TA)n Simple_repeat Simple_repeat 2 122 0 5 958 307 236 59 70 chr1 48899187 48899374 -148296058 + Lx9 LINE L1 7458 7642 -2 5 958 28 48 0 0 chr1 48899420 48899462 -148295970 + AT_rich Low_complexity Low_complexity 1 42 0 5 958 26 0 0 0 chr1 48900362 48900388 -148295044 + AT_rich Low_complexity Low_complexity 1 26 0 5 958 482 215 36 36 chr1 48901380 48901520 -148293912 + URR1B DNA MER1_type 86 225 0 5 958 2015 188 5 2 chr1 48901925 48902326 -148293106 - Lx LINE L1 0 6654 6253 5 958 379 318 72 82 chr1 48902966 48903477 -148291955 - Lx9 LINE L1 -227 7417 6912 5 958 198 103 0 0 chr1 48903482 48903511 -148291921 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 958 7945 178 36 5 chr1 48903511 48904980 -148290452 - Lx4A LINE L1 -2 7056 5501 5 958 230 336 17 25 chr1 48904974 48905093 -148290339 - Lx9 LINE L1 -742 6902 6785 5 958 508 286 8 8 chr1 48905112 48905246 -148290186 + MT2A LTR ERVL 1 134 -399 5 958 594 326 48 24 chr1 48905274 48905563 -148289869 - Lx9 LINE L1 -889 6755 6460 5 958 516 32 0 0 chr1 48905687 48905749 -148289683 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 958 321 285 108 38 chr1 48905930 48906244 -148289188 - Lx9 LINE L1 -1633 6011 5676 5 958 276 30 0 0 chr1 48906495 48906528 -148288904 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 958 411 160 0 0 chr1 48906529 48906604 -148288828 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 958 1974 213 117 0 chr1 48907037 48907497 -148287935 + RMER20A LTR ERVK 3 516 0 5 958 618 259 32 60 chr1 48908771 48908956 -148286476 - Lx9 LINE L1 -315 7329 7150 5 958 299 95 0 0 chr1 48908991 48909033 -148286399 - ORR1A2 LTR MaLR 0 326 285 5 958 968 297 17 20 chr1 48909033 48909332 -148286100 + RLTR16 LTR ERVK 1 298 -207 5 958 180 0 0 0 chr1 48909393 48909413 -148286019 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 958 1558 171 4 0 chr1 48909508 48909760 -148285672 - ORR1A2 LTR MaLR -73 254 2 5 958 27 0 0 0 chr1 48909782 48909809 -148285623 + AT_rich Low_complexity Low_complexity 1 27 0 5 958 7498 97 7 1 chr1 48910327 48912118 -148283314 - L1_Mus1 LINE L1 0 6567 4766 5 958 32868 81 4 6 chr1 48912161 48918373 -148277059 - L1Md_F2 LINE L1 0 6582 387 5 958 322 77 62 0 chr1 48918410 48918475 -148276957 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 5 958 1779 319 112 18 chr1 48918493 48919281 -148276151 + Lx6 LINE L1 6564 7425 -35 5 958 781 256 186 40 chr1 48919662 48919948 -148275484 + Lx9 LINE L1 7177 7515 -129 5 958 221 57 29 0 chr1 48919948 48919983 -148275449 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 958 781 256 186 40 chr1 48919983 48920046 -148275386 + Lx9 LINE L1 7516 7577 -67 5 958 336 24 0 0 chr1 48920124 48920165 -148275267 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 958 261 135 0 0 chr1 48920295 48920332 -148275100 - Lx8 LINE L1 -268 7205 7169 5 958 446 257 143 9 chr1 48920525 48920749 -148274683 - Lx9 LINE L1 -204 7440 7187 5 958 539 255 54 130 chr1 48920801 48921037 -148274395 - Lx9 LINE L1 -78 7566 7370 5 958 6432 57 2 0 chr1 48921037 48921842 -148273590 - L1_Mus1 LINE L1 0 6567 5761 5 958 539 255 54 130 chr1 48921842 48921975 -148273457 - Lx9 LINE L1 -275 7369 7225 5 958 237 319 0 69 chr1 48922112 48922213 -148273219 + Lx8 LINE L1 7263 7356 -117 5 958 396 0 0 0 chr1 48924399 48924443 -148270989 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 958 312 27 0 0 chr1 48925248 48925285 -148270147 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 958 987 110 15 0 chr1 48925723 48925859 -148269573 + B1_Mus1 SINE Alu 1 138 -10 5 958 351 0 0 0 chr1 48925859 48925898 -148269534 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 958 455 33 0 16 chr1 48925900 48925962 -148269470 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 5 958 243 88 0 0 chr1 48925974 48926008 -148269424 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 5 958 250 262 36 0 chr1 48926012 48926096 -148269336 + GA-rich Low_complexity Low_complexity 2 88 0 5 958 8263 27 1 0 chr1 48926624 48928242 -148267190 - L1Md_A LINE L1 0 6582 4963 5 958 11076 22 1 1 chr1 48928241 48929546 -148265886 + L1Md_A LINE L1 3689 4993 -890 5 958 587 284 92 13 chr1 48930166 48930469 -148264963 + Lx7 LINE L1 7157 7483 -213 5 958 22 56 0 0 chr1 48930641 48930677 -148264755 + AT_rich Low_complexity Low_complexity 1 36 0 5 958 234 287 43 54 chr1 48930859 48930951 -148264481 + PB1D7 SINE Alu 28 118 -2 5 958 8797 161 34 13 chr1 48931610 48934538 -148260894 - Lx2A1 LINE L1 -2 7006 4019 5 958 1160 101 0 6 chr1 48934662 48934841 -148260591 + (TTC)n Simple_repeat Simple_repeat 3 180 0 5 958 659 12 12 0 chr1 48934841 48934921 -148260511 + (TCC)n Simple_repeat Simple_repeat 3 83 0 5 958 308 327 27 0 chr1 48935276 48935386 -148260046 - ORR1E LTR MaLR -244 115 3 5 958 25 0 0 0 chr1 48936674 48936699 -148258733 + AT_rich Low_complexity Low_complexity 1 25 0 5 958 336 107 74 0 chr1 48940080 48940201 -148255231 + (TA)n Simple_repeat Simple_repeat 1 130 0 5 958 225 132 0 0 chr1 48941202 48941240 -148254192 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 958 565 264 0 20 chr1 48941928 48942079 -148253353 - B1_Mur4 SINE Alu 0 150 3 5 958 363 347 74 13 chr1 48942130 48942279 -148253153 - B3 SINE B2 -11 205 48 5 958 239 0 32 0 chr1 48942359 48942390 -148253042 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 958 428 294 84 0 chr1 48942449 48942568 -148252864 - B3 SINE B2 -87 129 1 5 958 28 29 0 0 chr1 48942675 48942710 -148252722 + AT_rich Low_complexity Low_complexity 1 35 0 5 958 23 0 0 0 chr1 48943699 48943722 -148251710 + AT_rich Low_complexity Low_complexity 1 23 0 5 958 1172 253 66 20 chr1 48943801 48944288 -148251144 - RLTR20A LTR ERVK 0 534 1 5 958 1144 130 114 0 chr1 48944291 48944537 -148250895 - MYSERV16_I-int LTR ERVK -3 2323 2050 5 958 3752 190 59 48 chr1 48944535 48945209 -148250223 - MYSERV16_I-int LTR ERVK -1417 909 224 5 958 5727 127 64 2 chr1 48945209 48946134 -148249298 - Lx3_Mus LINE L1 -16 6993 6012 5 958 3752 197 56 45 chr1 48946134 48946371 -148249061 - MYSERV16_I-int LTR ERVK -2103 223 1 5 958 238 204 19 0 chr1 48946431 48946485 -148248947 + CT-rich Low_complexity Low_complexity 2 56 0 5 958 745 237 6 11 chr1 48946767 48946942 -148248490 + Lx6 LINE L1 6504 6677 -783 5 958 1362 262 8 7 chr1 48946941 48947257 -148248175 + Lx6 LINE L1 6963 7542 -154 5 958 5584 39 9 0 chr1 48947276 48947947 -148247485 - L1Md_T LINE L1 -1 6581 5905 5 958 7000 20 0 0 chr1 48947947 48948753 -148246679 + L1Md_T LINE L1 5048 5853 -30 5 958 22 0 0 0 chr1 48949338 48949360 -148246072 + AT_rich Low_complexity Low_complexity 1 22 0 5 958 303 308 20 34 chr1 48950193 48950341 -148245091 + A-rich Low_complexity Low_complexity 2 147 0 5 958 288 279 25 12 chr1 48951302 48951382 -148244050 + B3A SINE B2 1 81 -117 5 958 252 86 0 0 chr1 48951459 48951494 -148243938 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 958 322 294 69 0 chr1 48951772 48951874 -148243558 - MTE2a LTR MaLR -63 316 208 5 958 522 242 19 13 chr1 48952089 48952244 -148243188 + Lx9 LINE L1 7350 7505 -139 5 958 204 125 0 0 chr1 48952265 48952297 -148243135 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 958 420 364 82 12 chr1 48952455 48952783 -148242649 + Lx8 LINE L1 7121 7471 -2 5 958 32 26 0 0 chr1 48952857 48952896 -148242536 + AT_rich Low_complexity Low_complexity 1 39 0 5 958 416 134 0 24 chr1 48953424 48953508 -148241924 + (CATA)n Simple_repeat Simple_repeat 2 83 0 5 958 32 43 0 0 chr1 48953583 48953629 -148241803 + AT_rich Low_complexity Low_complexity 1 46 0 5 958 391 18 0 35 chr1 48954151 48954209 -148241223 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 5 958 387 0 0 0 chr1 48954337 48954380 -148241052 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 958 2839 166 12 10 chr1 48954383 48954893 -148240539 - Lx2 LINE L1 -9 6988 6478 6 958 1265 65 6 6 chr1 48954896 48955067 -148240365 + BGLII LTR ERVK 19 189 -232 6 958 953 130 0 6 chr1 48955067 48955230 -148240202 + (GAA)n Simple_repeat Simple_repeat 3 164 0 6 958 917 193 18 55 chr1 48955230 48955386 -148240046 + BGLII LTR ERVK 253 411 -10 6 958 195 319 40 56 chr1 48955585 48955711 -148239721 - MIR SINE MIR -77 185 62 6 958 269 288 91 0 chr1 48955874 48955940 -148239492 + B3 SINE B2 9 80 -136 6 958 5576 67 1 0 chr1 48956422 48957143 -148238289 + L1Md_F2 LINE L1 5858 6579 -3 6 958 1163 61 0 0 chr1 48957226 48957373 -148238059 + B1_Mm SINE Alu 1 147 0 6 958 231 129 15 46 chr1 48957374 48957439 -148237993 + A-rich Low_complexity Low_complexity 1 63 0 6 958 477 318 41 6 chr1 48957450 48957621 -148237811 + B3 SINE B2 39 215 -1 6 958 315 323 16 0 chr1 48957666 48957793 -148237639 + Lx9 LINE L1 7286 7414 -230 6 958 22 35 0 0 chr1 48957958 48957987 -148237445 + AT_rich Low_complexity Low_complexity 1 29 0 6 958 795 221 119 17 chr1 48958149 48958397 -148237035 - RLTR26 LTR ERVK -648 258 1 6 958 426 277 82 23 chr1 48958488 48958755 -148236677 + L1_Mur3 LINE L1 4735 5065 -1081 6 958 1786 261 2 2 chr1 48960126 48960560 -148234872 - Lx7 LINE L1 -1672 6024 5591 6 958 4729 266 53 51 chr1 48960558 48962144 -148233288 + Lx7 LINE L1 6092 7680 -16 6 958 27 29 0 0 chr1 48962228 48962262 -148233170 + AT_rich Low_complexity Low_complexity 1 34 0 6 958 22 35 0 0 chr1 48962462 48962491 -148232941 + AT_rich Low_complexity Low_complexity 1 29 0 6 958 8451 73 2 3 chr1 48963617 48965450 -148229982 - L1Md_F2 LINE L1 -1 6581 4752 6 958 22 35 0 0 chr1 48965834 48965863 -148229569 + AT_rich Low_complexity Low_complexity 1 29 0 6 958 2373 77 0 0 chr1 48966119 48966432 -148229000 - L1_Mur1 LINE L1 -648 5238 4926 6 958 4719 121 30 6 chr1 48966432 48967163 -148228269 + Lx3A LINE L1 6227 6975 -6 6 958 440 164 0 9 chr1 48967216 48967327 -148228105 + (TA)n Simple_repeat Simple_repeat 1 110 0 6 958 201 247 0 0 chr1 48967370 48967451 -148227981 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 958 4064 119 5 19 chr1 48967504 48968139 -148227293 - L1_Mus4 LINE L1 0 6636 6011 6 958 371 204 0 20 chr1 48968134 48968234 -148227198 - Lx9 LINE L1 -4 7640 7543 6 958 269 248 59 8 chr1 48968783 48968901 -148226531 + (TCTA)n Simple_repeat Simple_repeat 1 124 0 6 958 208 281 0 0 chr1 48968943 48969000 -148226432 + GA-rich Low_complexity Low_complexity 1 57 0 6 958 271 346 42 36 chr1 48969071 48969239 -148226193 - Lx9 LINE L1 -274 7370 7202 6 958 22 56 0 0 chr1 48969575 48969611 -148225821 + AT_rich Low_complexity Low_complexity 1 36 0 6 958 502 370 17 34 chr1 48969663 48969898 -148225534 + B4A SINE B4 2 232 -60 6 958 4590 30 0 0 chr1 48969898 48970430 -148225002 + MERVL-int LTR ERVL 3954 4485 -1000 6 958 320 229 10 20 chr1 48971346 48971444 -148223988 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 958 21 36 0 0 chr1 48971657 48971685 -148223747 + AT_rich Low_complexity Low_complexity 1 28 0 6 958 225 0 0 0 chr1 48971692 48971717 -148223715 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 6 958 8138 26 0 3 chr1 48971879 48972811 -148222621 - RLTR13B3 LTR ERVK 0 929 1 6 958 3379 122 12 21 chr1 48972981 48973541 -148221891 + RLTR31B_Mm LTR ERVK 3 557 0 6 958 249 33 0 0 chr1 48973814 48973844 -148221588 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 958 34 42 0 0 chr1 48973959 48974007 -148221425 + AT_rich Low_complexity Low_complexity 1 48 0 6 958 631 314 69 62 chr1 48975685 48975974 -148219458 + B4A SINE B4 2 292 0 6 958 712 310 112 47 chr1 48975994 48976424 -148219008 - RMER5 LTR ERV1 -2 532 75 6 958 773 64 0 0 chr1 48976572 48976682 -148218750 + L1_Mus1 LINE L1 6457 6566 -1 6 958 688 209 337 64 chr1 48976957 48977254 -148218178 + ORR1C1 LTR MaLR 1 378 0 6 958 330 26 0 0 chr1 48978555 48978594 -148216838 + (T)n Simple_repeat Simple_repeat 1 39 0 6 958 37866 30 0 0 chr1 48978658 48985096 -148210336 - L1Md_T LINE L1 -1 6584 52 6 958 24 32 0 0 chr1 48985846 48985877 -148209555 + AT_rich Low_complexity Low_complexity 1 31 0 6 958 319 376 33 29 chr1 48985889 48986163 -148209269 - L1M4 LINE L1 -431 5747 5473 6 958 412 363 55 24 chr1 48987031 48987285 -148208147 + B4A SINE B4 2 263 -29 6 958 883 277 55 62 chr1 48987758 48987895 -148207537 - Lx9 LINE L1 -133 7511 7372 6 958 5056 64 8 6 chr1 48987895 48988555 -148206877 - L1_Mus2 LINE L1 0 6566 5906 6 958 883 277 55 62 chr1 48988555 48988802 -148206630 - Lx9 LINE L1 -273 7371 7130 6 958 273 79 0 0 chr1 48988814 48988852 -148206580 - L1_Rod LINE L1 -2627 3220 3183 6 958 3329 162 21 22 chr1 48989006 48989630 -148205802 - Lx2 LINE L1 -12 6985 6363 6 958 268 294 0 14 chr1 48989641 48989710 -148205722 + ID4_ SINE ID 14 81 -2 6 958 753 285 19 0 chr1 48989743 48989950 -148205482 - L1_Rod LINE L1 -3364 2483 2273 6 958 6948 138 3 6 chr1 48989964 48991145 -148204287 - Lx LINE L1 -2 6652 5476 6 958 7337 48 1 7 chr1 48991785 48992705 -148202727 + L1Md_F2 LINE L1 5668 6582 0 6 958 224 30 30 0 chr1 48992822 48992855 -148202577 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 958 25 83 0 0 chr1 48993157 48993217 -148202215 + AT_rich Low_complexity Low_complexity 1 60 0 6 958 27 0 0 0 chr1 48993475 48993502 -148201930 + AT_rich Low_complexity Low_complexity 1 27 0 6 958 448 400 11 46 chr1 48994331 48994614 -148200818 - MER44B DNA MER2_type -266 284 12 6 958 203 0 0 36 chr1 48994972 48995000 -148200432 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 6 958 189 139 0 0 chr1 48995578 48995621 -148199811 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 6 958 602 165 0 8 chr1 48995633 48995761 -148199671 + L1_Mus4 LINE L1 6490 6616 -20 6 958 452 18 18 0 chr1 48995781 48995838 -148199594 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 958 297 286 71 26 chr1 48995952 48996178 -148199254 - L1MD LINE L1 -1233 4913 4678 6 958 4621 161 54 43 chr1 48996755 48996938 -148198494 + Lx3B LINE L1 5647 5840 -1133 6 958 964 129 0 0 chr1 48996938 48997077 -148198355 + B1_Mus1 SINE Alu 1 139 -9 6 958 4621 161 54 43 chr1 48997077 48997803 -148197629 + Lx3B LINE L1 5841 6566 -407 6 958 1643 159 0 35 chr1 48997803 48998122 -148197310 + Lx3B LINE L1 6661 6968 -5 6 958 21 0 0 0 chr1 48998375 48998396 -148197036 + AT_rich Low_complexity Low_complexity 1 21 0 6 958 24 32 0 0 chr1 49001308 49001339 -148194093 + AT_rich Low_complexity Low_complexity 1 31 0 1 958 303 333 67 74 chr1 49002604 49002753 -148192679 + MLT1B LTR MaLR 240 387 -3 2 958 1100 89 0 7 chr1 49002965 49003112 -148192320 + B1_Mus2 SINE Alu 2 147 0 3 958 199 73 73 0 chr1 49003277 49003318 -148192114 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 4 958 7930 44 9 4 chr1 49003339 49004319 -148191113 - L1Md_F2 LINE L1 -1 6581 5597 5 958 336 161 0 0 chr1 49004852 49004914 -148190518 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 6 958 3063 69 2 2 chr1 49005101 49005495 -148189937 - MTA_Mm LTR MaLR -2 394 1 7 958 6048 106 40 81 chr1 49005495 49006573 -148188859 - MTA_Mm-int LTR MaLR 0 1098 65 7 958 1032 99 7 0 chr1 49006575 49006727 -148188705 + MTB_Mm LTR MaLR 1 153 -254 8 958 254 197 0 0 chr1 49007617 49007678 -148187754 + Lx3A LINE L1 6904 6964 -17 9 958 208 170 0 36 chr1 49007678 49007702 -148187730 + polypurine Low_complexity Low_complexity 2 25 0 1 958 1289 68 6 0 chr1 49007702 49007879 -148187553 + (GAA)n Simple_repeat Simple_repeat 3 180 0 1 958 208 170 0 36 chr1 49007879 49007909 -148187523 + polypurine Low_complexity Low_complexity 26 54 0 1 958 261 383 0 27 chr1 49008125 49008235 -148187197 + PB1D10 SINE Alu 5 111 -6 1 958 25 0 0 0 chr1 49008738 49008763 -148186669 + AT_rich Low_complexity Low_complexity 1 25 0 1 958 620 45 11 0 chr1 49008911 49008999 -148186433 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 958 2180 169 16 34 chr1 49009667 49010103 -148185329 + Lx3A LINE L1 5824 6251 -730 1 958 2969 29 0 0 chr1 49010094 49010443 -148184989 + L1Md_T LINE L1 5238 5586 -297 1 958 8263 40 1 1 chr1 49010443 49011439 -148183993 + L1Md_T LINE L1 5587 6582 0 1 958 2996 139 58 2 chr1 49011439 49011935 -148183497 + Lx3A LINE L1 6253 6776 -205 1 958 1304 117 0 7 chr1 49011908 49012297 -148183135 + L1VL4 LINE L1 774 1093 -5329 1 958 17434 113 47 47 chr1 49012301 49014397 -148181035 + L1_Mus2 LINE L1 2715 4884 -1682 1 958 251 250 43 86 chr1 49014397 49014537 -148180895 - MER72B LTR ERV1 -355 413 280 2 958 17434 113 47 47 chr1 49014537 49016159 -148179273 + L1_Mus2 LINE L1 4885 6565 -1 1 958 1703 192 6 9 chr1 49016458 49016779 -148178653 - Lx2B LINE L1 -430 6570 6251 2 958 1961 190 5 0 chr1 49016772 49017140 -148178292 + Lx2 LINE L1 5470 5839 -47 2 958 785 127 171 0 chr1 49017143 49017301 -148178131 + B2_Mm2 SINE B2 2 186 -9 2 958 254 314 6 13 chr1 49017289 49017339 -148178093 + ORR1B1-int LTR MaLR 597 645 -864 2 958 895 159 20 7 chr1 49017339 49017485 -148177947 + B1_Mus1 SINE Alu 1 148 0 2 958 243 39 18 73 chr1 49017488 49017543 -148177889 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 2 958 2364 175 44 11 chr1 49017543 49017977 -148177455 + Lx2 LINE L1 5823 6270 -727 2 958 524 340 21 21 chr1 49017994 49018231 -148177201 - Lx8 LINE L1 -776 6697 6461 2 958 635 0 13 0 chr1 49018472 49018547 -148176885 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 958 459 237 83 17 chr1 49018547 49018667 -148176765 - RLTR16 LTR ERVK -367 138 11 2 958 337 305 126 51 chr1 49018932 49019226 -148176206 + L1M4 LINE L1 5300 5615 -563 3 958 43 81 0 0 chr1 49019783 49019882 -148175550 + AT_rich Low_complexity Low_complexity 1 99 0 3 958 357 338 70 23 chr1 49019984 49020199 -148175233 + L1MEc LINE L1 1662 1886 -4514 3 958 1879 215 19 35 chr1 49020258 49020686 -148174746 + RLTR11A2 LTR ERVK 107 527 0 3 958 311 366 0 0 chr1 49020741 49020853 -148174579 + PB1D10 SINE Alu 1 112 -5 3 959 1905 95 43 22 chr1 49021007 49021331 -148174101 - IAPEY_LTR LTR ERVK 0 385 55 3 959 3614 285 64 25 chr1 49021386 49022577 -148172855 + Lx6 LINE L1 6053 7545 -151 3 959 28 71 0 0 chr1 49022997 49023053 -148172379 + AT_rich Low_complexity Low_complexity 1 56 0 3 959 333 366 65 42 chr1 49023257 49023471 -148171961 + MTEb LTR MaLR 1 219 -160 3 959 521 179 7 0 chr1 49023586 49023615 -148171817 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 959 723 24 0 0 chr1 49023615 49023700 -148171732 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 959 521 179 7 0 chr1 49023700 49023815 -148171617 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 959 27 0 0 0 chr1 49024201 49024228 -148171204 + AT_rich Low_complexity Low_complexity 1 27 0 4 959 222 339 18 0 chr1 49024807 49024863 -148170569 + RSINE1 SINE B4 62 118 -47 4 959 22 0 0 0 chr1 49024983 49025005 -148170427 + AT_rich Low_complexity Low_complexity 1 22 0 4 959 1437 265 34 3 chr1 49025891 49026269 -148169163 - MTC LTR MaLR -2 419 30 4 959 626 94 17 17 chr1 49026421 49026540 -148168892 - L1_Mus3 LINE L1 -3 6635 6517 4 959 25 31 0 0 chr1 49028181 49028213 -148167219 + AT_rich Low_complexity Low_complexity 1 32 0 4 959 21 71 0 0 chr1 49028240 49028282 -148167150 + AT_rich Low_complexity Low_complexity 1 42 0 4 959 455 311 40 35 chr1 49029143 49029343 -148166089 + Lx9 LINE L1 7039 7239 -405 4 959 3189 61 53 2 chr1 49030155 49030568 -148164864 + RLTR10C LTR ERVK 1 434 -2 5 959 1404 100 157 157 chr1 49030571 49030914 -148164518 + MMERVK10C-int LTR ERVK 1 343 -7238 5 959 787 188 5 11 chr1 49030912 49031100 -148164332 + MMERVK10C-int LTR ERVK 729 915 -6666 5 959 438 145 0 91 chr1 49031104 49031225 -148164207 + MMERVK10C-int LTR ERVK 845 954 -6627 5 959 670 227 303 39 chr1 49031313 49031683 -148163749 + MMERVK10C-int LTR ERVK 312 668 -5469 5 959 400 130 6 58 chr1 49031683 49031811 -148163621 + MMERVK10C-int LTR ERVK 1721 1947 -5634 5 959 40954 47 7 11 chr1 49031817 49036866 -148158566 + MMERVK10C-int LTR ERVK 2552 7581 0 5 959 3402 52 31 2 chr1 49036866 49037290 -148158142 + RLTR10C LTR ERVK 1 436 0 5 959 22 35 0 0 chr1 49037453 49037482 -148157950 + AT_rich Low_complexity Low_complexity 1 29 0 5 959 206 95 24 0 chr1 49037723 49037765 -148157667 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 5 959 32 67 0 0 chr1 49037874 49037934 -148157498 + AT_rich Low_complexity Low_complexity 1 60 0 5 959 240 333 91 45 chr1 49038201 49038443 -148156989 + MLT1B LTR MaLR 15 267 -123 5 959 405 0 0 0 chr1 49038458 49038503 -148156929 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 959 1195 261 41 14 chr1 49038558 49038920 -148156512 + ORR1D1 LTR MaLR 3 374 0 5 959 314 262 48 10 chr1 49039080 49039184 -148156248 - Lx9 LINE L1 -594 7050 6943 5 959 679 246 183 46 chr1 49039212 49039540 -148155892 + ORR1D1 LTR MaLR 1 373 -1 5 959 263 84 27 53 chr1 49040072 49040147 -148155285 + T-rich Low_complexity Low_complexity 4 76 0 5 959 1207 41 7 0 chr1 49040155 49040301 -148155131 - B1_Mus2 SINE Alu 0 147 1 6 959 29 78 0 0 chr1 49040363 49040427 -148155005 + AT_rich Low_complexity Low_complexity 1 64 0 6 959 23 54 0 0 chr1 49040461 49040498 -148154934 + AT_rich Low_complexity Low_complexity 1 37 0 6 959 1730 72 0 8 chr1 49041222 49041460 -148153972 + L1Md_F2 LINE L1 6347 6582 0 6 959 5887 206 118 31 chr1 49042404 49043655 -148151777 + RLTR22_Mur LTR ERVK 1 1320 -528 6 959 393 22 0 0 chr1 49043655 49043701 -148151731 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 959 5887 216 304 26 chr1 49043701 49044083 -148151349 + RLTR22_Mur LTR ERVK 1321 1848 0 6 959 22 0 0 0 chr1 49045002 49045024 -148150408 + AT_rich Low_complexity Low_complexity 1 22 0 6 959 2092 128 25 0 chr1 49045702 49046021 -148149411 + ORR1A2 LTR MaLR 1 327 0 6 959 1331 257 89 25 chr1 49046340 49046699 -148148733 + Lx5 LINE L1 6571 6952 -98 6 959 1403 163 38 9 chr1 49047022 49047301 -148148131 + MT2C_Mm LTR ERVL 210 465 -10 6 959 409 370 49 24 chr1 49047300 49047505 -148147927 + ID_B1 SINE B4 6 215 -9 7 959 318 305 47 19 chr1 49047725 49047832 -148147600 - PB1D10 SINE Alu -3 114 5 7 959 230 309 12 0 chr1 49048563 49048644 -148146788 + CT-rich Low_complexity Low_complexity 3 84 0 7 959 23 0 0 0 chr1 49048702 49048725 -148146707 + AT_rich Low_complexity Low_complexity 1 23 0 7 959 421 165 35 23 chr1 49048777 49048864 -148146568 + Lx3B LINE L1 6881 6968 -5 7 959 333 143 18 0 chr1 49048891 49048947 -148146485 - MYSERV16_I-int LTR ERVK -1547 779 723 7 959 27 0 0 0 chr1 49049073 49049100 -148146332 + AT_rich Low_complexity Low_complexity 1 27 0 7 959 4516 135 125 2 chr1 49049648 49050020 -148145412 - Lx3_Mus LINE L1 -523 6486 6051 7 959 180 0 0 0 chr1 49050020 49050040 -148145392 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 7 959 4516 135 125 2 chr1 49050040 49050148 -148145284 - Lx3_Mus LINE L1 -959 6050 5923 7 959 306 0 0 0 chr1 49050148 49050182 -148145250 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 959 4516 123 19 3 chr1 49050182 49050865 -148144567 - Lx3_Mus LINE L1 -1087 5922 5222 7 959 33827 86 3 4 chr1 49050847 49056739 -148138693 - L1Md_F2 LINE L1 -12 6570 696 8 959 3872 62 0 0 chr1 49056726 49057214 -148138218 - L1Md_F2 LINE L1 -297 5586 5099 8 959 7653 48 8 1 chr1 49057214 49058177 -148137255 + L1Md_F2 LINE L1 5609 6578 -4 8 959 971 185 5 20 chr1 49058201 49058400 -148137032 - L1VL1 LINE L1 -6143 279 84 8 959 931 106 7 0 chr1 49058402 49058543 -148136889 - Lx3_Mus LINE L1 -1562 4324 4183 7 959 7949 124 26 10 chr1 49058536 49059865 -148135567 - Lx3_Mus LINE L1 -2088 3798 2448 7 959 619 130 22 58 chr1 49059857 49059996 -148135436 + Lx3_Mus LINE L1 6060 6193 -816 8 959 3408 141 35 0 chr1 49059996 49060569 -148134863 + Lx3_Mus LINE L1 6409 7001 -8 8 959 272 295 57 8 chr1 49060835 49060958 -148134474 - MMSAT4 Satellite Satellite -5 163 35 8 959 255 303 91 50 chr1 49061074 49061293 -148134139 - MurSatRep1 Unknown Unknown 0 2137 1910 8 959 402 284 32 27 chr1 49061172 49061449 -148133983 - MMSAT4 Satellite Satellite -13 278 1 8 959 281 286 12 12 chr1 49061551 49061636 -148133796 - MurSatRep1 Unknown Unknown -1409 728 644 8 959 3311 135 93 39 chr1 49061847 49062189 -148133243 + Lx3A LINE L1 6331 6677 -304 8 959 980 0 0 0 chr1 49062189 49062311 -148133121 - L1Md_T LINE L1 0 6582 6461 8 959 3311 135 93 39 chr1 49062311 49062583 -148132849 + Lx3A LINE L1 6678 6978 -3 8 959 22 70 0 0 chr1 49062583 49062626 -148132806 + AT_rich Low_complexity Low_complexity 1 43 0 8 959 644 112 0 0 chr1 49063128 49063232 -148132200 - L1_Mm LINE L1 -435 5448 5314 8 959 3344 133 62 2 chr1 49063286 49063851 -148131581 - Lx LINE L1 -8 6646 6048 9 959 352 286 0 9 chr1 49065089 49065195 -148130237 - Lx2B LINE L1 -13 6987 6883 9 959 246 62 0 0 chr1 49065198 49065230 -148130202 + (A)n Simple_repeat Simple_repeat 1 32 0 9 959 280 356 84 67 chr1 49065594 49065940 -148129492 - MTEb LTR MaLR -14 365 14 9 959 982 266 44 55 chr1 49065992 49066354 -148129078 + Lx9 LINE L1 5670 6027 -1617 9 959 23 0 0 0 chr1 49066386 49066409 -148129023 + AT_rich Low_complexity Low_complexity 1 23 0 9 959 2481 269 77 21 chr1 49066489 49067260 -148128172 + Lx9 LINE L1 6419 7232 -412 9 959 270 125 0 94 chr1 49067260 49067313 -148128119 + RLTR41 LTR ERV1 1 48 -398 9 959 30960 87 1 3 chr1 49067568 49072579 -148122853 + L1Md_F2 LINE L1 584 5585 -298 9 959 8043 50 3 0 chr1 49072580 49073570 -148121862 + L1Md_F2 LINE L1 5587 6579 -3 9 959 227 311 0 135 chr1 49073651 49073755 -148121677 + RSINE1 SINE B4 76 165 0 9 959 725 126 0 8 chr1 49073964 49074030 -148121402 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 9 959 1181 96 11 0 chr1 49074030 49074207 -148121225 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 959 725 126 0 8 chr1 49074207 49074268 -148121164 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1 959 26 30 0 0 chr1 49074584 49074617 -148120815 + AT_rich Low_complexity Low_complexity 1 33 0 1 959 1125 23 0 0 chr1 49075129 49075261 -148120171 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 959 315 364 127 22 chr1 49075286 49075561 -148119871 + MER76 LTR ERVL 8 311 -380 1 959 500 310 87 12 chr1 49075725 49076028 -148119404 + L1M2 LINE L1 5274 5595 -702 1 959 737 41 0 10 chr1 49076535 49076633 -148118799 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 959 21 0 0 0 chr1 49076759 49076780 -148118652 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 33 43 0 0 chr1 49080092 49080139 -148115293 + AT_rich Low_complexity Low_complexity 1 47 0 1 959 308 135 19 0 chr1 49080229 49080281 -148115151 - HAL1-3A_ME LINE L1 -831 2027 1975 1 959 612 141 0 40 chr1 49081320 49081446 -148113986 - Lx LINE L1 -6 6648 6528 1 959 3644 136 3 2 chr1 49081448 49082173 -148113259 - Lx LINE L1 -660 5994 5269 1 959 1065 147 6 0 chr1 49082169 49082339 -148113093 - L1VL2 LINE L1 -6112 223 53 1 959 3451 152 19 0 chr1 49082604 49083171 -148112261 - Lx3B LINE L1 -256 6717 6140 1 959 2777 156 69 44 chr1 49083171 49083855 -148111577 + RMER17D2 LTR ERVK 109 809 0 1 959 318 115 0 0 chr1 49084113 49084165 -148111267 + (GAAA)n Simple_repeat Simple_repeat 4 55 0 1 959 1030 263 43 128 chr1 49084644 49085058 -148110374 - ORR1C2 LTR MaLR 0 384 6 1 959 7155 97 13 4 chr1 49085449 49086459 -148108973 - L1_Mus3 LINE L1 -7 6631 5613 1 959 26 82 0 0 chr1 49086475 49086536 -148108896 + AT_rich Low_complexity Low_complexity 1 61 0 1 959 5415 175 35 6 chr1 49087937 49088954 -148106478 + Lx3C LINE L1 5918 6964 -12 1 959 419 0 20 0 chr1 49088954 49089005 -148106427 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1 959 21 71 0 0 chr1 49091101 49091143 -148104289 + AT_rich Low_complexity Low_complexity 1 42 0 1 959 488 126 11 0 chr1 49091531 49091618 -148103814 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 959 651 309 77 0 chr1 49091618 49091838 -148103594 + Lx6 LINE L1 6879 7115 -345 1 959 494 87 0 12 chr1 49091841 49091923 -148103509 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 959 180 169 47 78 chr1 49093603 49093667 -148101765 - L3 LINE CR1 -2304 2185 2124 1 959 223 413 0 0 chr1 49094126 49094201 -148101231 - ID4 SINE ID -6 77 3 1 959 183 42 0 0 chr1 49094505 49094529 -148100903 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 959 443 115 92 0 chr1 49095007 49095094 -148100338 + Lx3B LINE L1 6875 6969 -4 1 959 890 103 0 7 chr1 49095096 49095233 -148100199 + (GAA)n Simple_repeat Simple_repeat 2 137 0 1 959 247 301 77 42 chr1 49095377 49095689 -148099743 - L1M4 LINE L1 -2903 3243 2921 1 959 809 292 53 45 chr1 49095710 49096215 -148099217 - L1M5 LINE L1 -2129 4017 3509 1 959 477 0 0 0 chr1 49096265 49096318 -148099114 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 959 312 27 0 0 chr1 49096688 49096725 -148098707 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 959 27 29 0 0 chr1 49097196 49097230 -148098202 + AT_rich Low_complexity Low_complexity 1 34 0 1 959 6186 150 23 10 chr1 49097523 49098915 -148096517 - Lx LINE L1 -61 6593 5212 1 959 1579 36 5 0 chr1 49099092 49099284 -148096148 - B2_Mm1a SINE B2 0 193 1 1 959 230 262 15 15 chr1 49099378 49099425 -148096007 + polypyrimidine Low_complexity Low_complexity 20 66 0 1 959 402 21 0 0 chr1 49099425 49099472 -148095960 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 959 230 262 15 15 chr1 49099472 49099490 -148095942 + polypyrimidine Low_complexity Low_complexity 1 19 0 1 959 244 352 0 0 chr1 49099563 49099651 -148095781 + Lx7 LINE L1 6558 6645 -1051 1 959 481 214 80 48 chr1 49099782 49099857 -148095575 - ORR1C2 LTR MaLR -11 373 298 1 959 1758 182 268 36 chr1 49099857 49100331 -148095101 - MT2B2 LTR ERVL 0 584 1 1 959 481 218 80 52 chr1 49100331 49100463 -148094969 - ORR1C2 LTR MaLR -87 297 159 1 959 291 252 12 6 chr1 49100463 49100623 -148094809 + GA-rich Low_complexity Low_complexity 2 162 0 1 959 291 244 0 60 chr1 49100630 49100713 -148094719 - ORR1C2 LTR MaLR -190 194 117 1 959 3721 166 148 13 chr1 49100713 49101559 -148093873 + L1_Mur1 LINE L1 3045 4004 -1882 1 959 949 40 8 0 chr1 49101579 49101703 -148093729 + B1_Mm SINE Alu 23 147 0 1 959 378 16 29 59 chr1 49101706 49101774 -148093658 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 1 959 1032 227 66 69 chr1 49102563 49102955 -148092477 - Lx9 LINE L1 -1 7643 7253 1 959 25 31 0 0 chr1 49103140 49103172 -148092260 + AT_rich Low_complexity Low_complexity 1 32 0 1 959 24 0 0 0 chr1 49104920 49104944 -148090488 + AT_rich Low_complexity Low_complexity 1 24 0 1 959 4631 151 3 11 chr1 49104956 49105718 -148089714 - Lx LINE L1 -1 6653 5898 1 959 2242 138 8 23 chr1 49105718 49106131 -148089301 + Lx LINE L1 5587 6027 -270 1 959 480 303 38 0 chr1 49106526 49106658 -148088774 - B1_Mur2 SINE Alu -12 137 1 1 959 351 324 182 5 chr1 49106713 49106933 -148088499 + L1MC2 LINE L1 5789 6047 -297 1 959 23 68 0 0 chr1 49107172 49107216 -148088216 + AT_rich Low_complexity Low_complexity 1 44 0 1 959 22 35 0 0 chr1 49107247 49107276 -148088156 + AT_rich Low_complexity Low_complexity 1 29 0 1 959 23 78 0 0 chr1 49107730 49107781 -148087651 + AT_rich Low_complexity Low_complexity 1 51 0 1 959 32 67 0 0 chr1 49108990 49109050 -148086382 + AT_rich Low_complexity Low_complexity 1 60 0 1 959 234 188 0 0 chr1 49110519 49110567 -148084865 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 959 3410 163 8 5 chr1 49110567 49111183 -148084249 - Lx3A LINE L1 -3 6978 6361 1 959 180 0 0 0 chr1 49111490 49111510 -148083922 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 959 777 31 0 0 chr1 49111510 49111608 -148083824 - B1_Mm SINE Alu -13 134 37 1 959 31 76 0 0 chr1 49112336 49112402 -148083030 + AT_rich Low_complexity Low_complexity 1 66 0 1 959 291 201 26 94 chr1 49112624 49112816 -148082616 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 1 959 23 0 0 0 chr1 49112982 49113005 -148082427 + AT_rich Low_complexity Low_complexity 1 23 0 1 959 3476 29 0 0 chr1 49113005 49113418 -148082014 - L1Md_T LINE L1 -2 6580 6168 1 959 22 35 0 0 chr1 49113726 49113755 -148081677 + AT_rich Low_complexity Low_complexity 1 29 0 1 959 370 292 16 8 chr1 49113919 49114040 -148081392 - Lx9 LINE L1 -1217 6427 6306 1 959 307 269 69 92 chr1 49114118 49114335 -148081097 - Lx9 LINE L1 -1547 6097 5886 1 959 229 204 0 0 chr1 49114344 49114388 -148081044 - MTD LTR MaLR -8 411 368 1 959 2870 218 99 42 chr1 49114378 49115206 -148080226 + RMER12 LTR ERVK 345 1219 -103 1 959 268 320 118 27 chr1 49115438 49115624 -148079808 - L1M5 LINE L1 -597 5582 5380 1 959 4079 92 92 43 chr1 49115847 49116563 -148078869 + RMER17A LTR ERVK 1 751 0 1 959 265 371 38 0 chr1 49116703 49116808 -148078624 + ORR1E LTR MaLR 41 149 -210 1 959 212 56 83 0 chr1 49116939 49116975 -148078457 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 1 959 479 117 11 0 chr1 49117144 49117238 -148078194 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 959 273 161 16 0 chr1 49118227 49118289 -148077143 - RCHARR1 DNA MER1_type -113 861 799 1 959 1211 197 135 34 chr1 49119453 49119779 -148075653 + RLTR15 LTR ERVK 1 359 0 1 959 180 135 0 0 chr1 49120228 49120265 -148075167 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 1 959 1332 67 0 0 chr1 49120925 49121105 -148074327 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 959 357 328 44 17 chr1 49121105 49121278 -148074154 - Lx9 LINE L1 -212 7432 7254 1 959 440 301 24 0 chr1 49121798 49121921 -148073511 + B3 SINE B2 91 216 0 1 959 195 42 0 0 chr1 49122603 49122627 -148072805 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 959 222 191 0 0 chr1 49122856 49122903 -148072529 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 959 31 58 0 0 chr1 49122986 49123038 -148072394 + AT_rich Low_complexity Low_complexity 1 52 0 1 959 768 309 34 53 chr1 49123942 49124298 -148071134 + Lx7 LINE L1 6434 6782 -914 1 959 6049 123 47 13 chr1 49125102 49125117 -148070315 - L1_Mus3 LINE L1 -19 6619 6608 1 959 454 31 15 15 chr1 49125117 49125182 -148070250 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1 959 6049 129 41 11 chr1 49125182 49126351 -148069081 - L1_Mus3 LINE L1 -31 6607 5399 1 959 525 337 78 18 chr1 49126367 49126688 -148068744 - Lx7 LINE L1 -252 7221 6872 1 959 1302 179 29 0 chr1 49126688 49126928 -148068504 - RLTR33 LTR ERVK 0 678 432 1 959 4156 34 0 0 chr1 49126928 49127432 -148068000 - L1Md_T LINE L1 -2076 3807 3304 1 959 15168 23 2 1 chr1 49127422 49129213 -148066219 + L1Md_T LINE L1 3795 5586 -297 1 959 8172 35 11 0 chr1 49129213 49130198 -148065234 + L1Md_T LINE L1 5587 6582 0 1 959 1593 160 52 14 chr1 49130198 49130489 -148064943 - RLTR33 LTR ERVK -233 445 144 1 959 304 247 65 0 chr1 49130493 49130570 -148064862 - Lx7 LINE L1 -743 6953 6872 1 959 394 89 18 0 chr1 49130570 49130626 -148064806 - RLTR33 LTR ERVK 0 678 622 1 959 462 162 131 0 chr1 49130628 49130727 -148064705 - RLTR33 LTR ERVK -541 137 26 1 959 876 106 21 14 chr1 49130739 49130883 -148064549 - L1_Mm LINE L1 -924 4959 4815 1 959 604 142 47 0 chr1 49130864 49130970 -148064462 + L1_Mus3 LINE L1 6050 6160 -478 1 959 845 74 0 8 chr1 49130962 49131084 -148064348 - L1_Mus3 LINE L1 -563 6075 5955 1 959 3970 103 12 0 chr1 49131085 49131650 -148063782 + L1_Mus3 LINE L1 6061 6632 -6 1 959 32 0 0 0 chr1 49131856 49131888 -148063544 + AT_rich Low_complexity Low_complexity 1 32 0 1 959 293 300 116 18 chr1 49132041 49132153 -148063279 + B1F SINE Alu 10 132 -17 1 959 460 336 31 39 chr1 49133534 49133791 -148061641 - Lx9 LINE L1 -457 7187 6933 1 959 254 327 36 0 chr1 49133929 49134039 -148061393 - Lx6 LINE L1 -141 7319 7206 1 959 308 24 24 0 chr1 49134039 49134080 -148061352 + (AATTG)n Simple_repeat Simple_repeat 2 43 0 1 959 280 328 17 17 chr1 49134084 49134202 -148061230 - Lx5 LINE L1 -376 6674 6557 1 959 365 175 16 0 chr1 49134203 49134266 -148061166 + Lx5 LINE L1 5475 5538 -339 2 959 619 217 21 7 chr1 49134271 49134415 -148061017 + Lx5 LINE L1 5685 5830 -1220 2 959 301 77 12 60 chr1 49134459 49134542 -148060890 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 2 959 23 68 0 0 chr1 49135348 49135392 -148060040 + AT_rich Low_complexity Low_complexity 1 44 0 2 959 256 271 71 39 chr1 49135407 49135560 -148059872 - Lx7 LINE L1 -411 5889 5701 2 959 291 311 100 13 chr1 49135683 49135914 -148059518 - Lx7 LINE L1 -744 5399 5149 2 959 292 312 14 7 chr1 49135934 49136076 -148059356 - L1M2 LINE L1 -920 5223 5081 2 959 239 307 79 0 chr1 49136075 49136189 -148059243 + Lx2 LINE L1 5510 5632 -254 2 959 4441 169 6 10 chr1 49136480 49137283 -148058149 - Lx2 LINE L1 -187 5696 4897 2 959 4668 168 70 2 chr1 49137277 49137329 -148058103 + Lx2 LINE L1 5689 5740 -1257 2 959 285 29 0 0 chr1 49137329 49137363 -148058069 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 959 4668 168 70 2 chr1 49137363 49138205 -148057227 + Lx2 LINE L1 5741 6643 -354 2 959 547 238 9 0 chr1 49138195 49138300 -148057132 + Lx2 LINE L1 6765 6870 -127 2 959 6556 102 5 7 chr1 49138292 49139239 -148056193 + L1_Mus3 LINE L1 5694 6638 0 2 959 256 374 59 86 chr1 49139555 49139777 -148055655 - MTEa LTR MaLR -132 247 32 2 959 293 82 20 0 chr1 49139974 49140023 -148055409 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 959 888 130 6 6 chr1 49140047 49140209 -148055223 - L1_Mus4 LINE L1 -1 6635 6474 2 959 1992 102 0 14 chr1 49140209 49140498 -148054934 + L1_Mus4 LINE L1 6189 6473 -163 2 959 831 315 38 47 chr1 49140793 49141133 -148054299 - ORR1E LTR MaLR -9 350 14 2 959 22 35 0 0 chr1 49141299 49141328 -148054104 + AT_rich Low_complexity Low_complexity 1 29 0 2 959 1062 97 0 0 chr1 49141664 49141809 -148053623 + B1_Mus2 SINE Alu 3 147 0 2 959 23 0 0 0 chr1 49141962 49141985 -148053447 + AT_rich Low_complexity Low_complexity 1 23 0 2 959 32 0 0 0 chr1 49142527 49142559 -148052873 + AT_rich Low_complexity Low_complexity 1 32 0 2 959 614 317 59 5 chr1 49142560 49142763 -148052669 - B3 SINE B2 0 216 3 2 959 277 350 31 0 chr1 49142936 49143033 -148052399 - U6 snRNA snRNA -7 100 1 2 959 420 130 0 0 chr1 49144658 49144727 -148050705 + (TATG)n Simple_repeat Simple_repeat 4 72 0 2 959 230 241 0 0 chr1 49144953 49145007 -148050425 + L1VL2 LINE L1 521 574 -5761 2 959 997 212 132 24 chr1 49145041 49145375 -148050057 + MusHAL1 LINE L1 517 886 -1826 2 959 388 376 37 43 chr1 49145799 49145963 -148049469 + B3A SINE B2 6 168 -30 2 959 288 0 0 0 chr1 49146022 49146054 -148049378 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 959 234 213 0 0 chr1 49146063 49146110 -148049322 - PB1 SINE Alu -54 73 27 2 959 337 280 75 59 chr1 49146175 49146414 -148049018 - L1MB1 LINE L1 -84 6084 5842 2 959 21 36 0 0 chr1 49146439 49146467 -148048965 + AT_rich Low_complexity Low_complexity 1 28 0 2 959 198 0 0 0 chr1 49146733 49146755 -148048677 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 959 303 28 0 0 chr1 49146755 49146790 -148048642 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 959 611 289 88 11 chr1 49146870 49147052 -148048380 - B3 SINE B2 -1 215 20 2 959 2519 135 64 0 chr1 49147147 49147585 -148047847 - Lx LINE L1 0 6654 6189 2 959 4987 145 20 8 chr1 49147623 49148479 -148046953 + Lx3B LINE L1 6103 6968 -5 2 959 26 0 0 0 chr1 49148499 49148525 -148046907 + AT_rich Low_complexity Low_complexity 1 26 0 2 959 37 52 0 0 chr1 49149028 49149086 -148046346 + AT_rich Low_complexity Low_complexity 1 58 0 2 959 411 250 24 0 chr1 49149613 49149737 -148045695 - Lx9 LINE L1 -13 7631 7505 2 959 7916 48 1 1 chr1 49149749 49151227 -148044205 - L1Md_F2 LINE L1 -4 6578 5100 2 960 259 304 103 22 chr1 49152188 49152373 -148043059 + L1M2 LINE L1 5669 5868 -429 2 960 3592 206 29 50 chr1 49153114 49153867 -148041565 + Lx2A1 LINE L1 6272 7008 0 2 960 414 0 0 0 chr1 49154194 49154240 -148041192 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 960 489 328 0 0 chr1 49154243 49154365 -148041067 - B3 SINE B2 -72 144 23 2 960 882 54 0 0 chr1 49155372 49155484 -148039948 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 2 960 330 351 74 39 chr1 49155516 49155747 -148039685 - HAL1-3A_ME LINE L1 -652 2206 1968 2 960 513 165 0 0 chr1 49159923 49160008 -148035424 - URR1B DNA MER1_type -12 213 129 2 960 3552 108 41 9 chr1 49160963 49161222 -148034210 + Lx3_Mus LINE L1 5819 6083 -926 2 960 423 0 0 0 chr1 49161222 49161269 -148034163 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 960 3552 108 41 9 chr1 49161269 49161564 -148033868 + Lx3_Mus LINE L1 6084 6391 -618 2 960 3115 62 70 25 chr1 49161564 49162010 -148033422 + L1Md_F2 LINE L1 6105 6570 -12 2 960 231 351 0 39 chr1 49162142 49162219 -148033213 + ID_B1 SINE B4 107 180 -44 2 960 1080 210 102 54 chr1 49163144 49163325 -148032107 - Lx9 LINE L1 -8 7636 7428 2 960 276 30 0 0 chr1 49163325 49163358 -148032074 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 960 1080 210 102 54 chr1 49163358 49163383 -148032049 - Lx9 LINE L1 -217 7427 7417 2 960 726 12 0 0 chr1 49163383 49163466 -148031966 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 960 1080 210 102 54 chr1 49163466 49163611 -148031821 - Lx9 LINE L1 -228 7416 7267 2 960 1524 58 5 0 chr1 49163857 49164047 -148031385 + B2_Mm1a SINE B2 1 191 -2 2 960 3115 88 56 7 chr1 49164229 49164676 -148030756 - L1_Mus1 LINE L1 0 6567 6099 2 960 939 110 7 46 chr1 49164785 49164937 -148030495 - B1_Mus1 SINE Alu 0 148 3 2 960 608 312 64 5 chr1 49165250 49165453 -148029979 + B3 SINE B2 1 215 -1 2 960 25 0 0 0 chr1 49165772 49165797 -148029635 + AT_rich Low_complexity Low_complexity 1 25 0 2 960 907 296 110 31 chr1 49166704 49167122 -148028310 - Lx8 LINE L1 -82 7391 6941 2 960 23 54 0 0 chr1 49168173 49168210 -148027222 + AT_rich Low_complexity Low_complexity 1 37 0 2 960 566 346 84 32 chr1 49168556 49169054 -148026378 - Lx8 LINE L1 -349 7124 6601 2 960 273 211 77 26 chr1 49169058 49169136 -148026296 + RMER13B LTR ERVK 818 899 -9 2 960 655 367 4 0 chr1 49169166 49169392 -148026040 - Lx8 LINE L1 -1014 6459 6233 2 960 240 222 0 31 chr1 49169441 49169506 -148025926 - Lx8 LINE L1 -2 7471 7409 2 960 2651 264 68 45 chr1 49169595 49170573 -148024859 - Lx7 LINE L1 0 7696 6697 2 960 1369 212 51 16 chr1 49170574 49170886 -148024546 - Lx4B LINE L1 -654 6404 6082 2 960 711 283 42 70 chr1 49170900 49170948 -148024484 - ORR1D2-int LTR MaLR -845 525 483 2 960 2808 73 36 8 chr1 49170948 49171333 -148024099 + MTA_Mm LTR MaLR 1 396 0 2 960 6951 101 26 54 chr1 49171333 49172463 -148022969 + MTA_Mm-int LTR MaLR 1 1098 0 2 960 2899 86 2 10 chr1 49172463 49172861 -148022571 + MTA_Mm LTR MaLR 1 395 -1 2 960 711 283 42 70 chr1 49172861 49173140 -148022292 - ORR1D2-int LTR MaLR -888 482 207 2 960 3346 62 11 2 chr1 49173140 49173576 -148021856 - L1Md_F3 LINE L1 -2 6582 6143 2 960 2097 25 0 0 chr1 49173576 49173819 -148021613 - L1Md_F2 LINE L1 -675 5907 5665 2 960 5066 60 6 18 chr1 49173819 49174493 -148020939 + L1Md_F2 LINE L1 5916 6581 -1 2 960 311 0 0 0 chr1 49174494 49174530 -148020902 - L1Md_F3 LINE L1 -432 6152 6117 2 960 491 262 159 16 chr1 49174530 49174712 -148020720 - ORR1D2-int LTR MaLR -1155 215 8 2 960 280 332 118 68 chr1 49174726 49174946 -148020486 - ORR1D2 LTR MaLR -5 365 135 2 960 21 36 0 0 chr1 49175521 49175549 -148019883 + AT_rich Low_complexity Low_complexity 1 28 0 2 960 544 338 67 38 chr1 49176089 49176427 -148019005 + Lx7 LINE L1 6338 6704 -769 2 960 343 308 40 30 chr1 49176461 49176662 -148018770 - L1MC2 LINE L1 -127 6206 6004 2 960 482 314 55 42 chr1 49176669 49176905 -148018527 - RMER15 LTR ERVL -12 563 325 2 960 362 242 30 43 chr1 49177179 49177343 -148018089 - L1MC2 LINE L1 -2013 5982 5821 2 960 279 0 0 0 chr1 49177476 49177507 -148017925 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 960 591 294 42 0 chr1 49177544 49177687 -148017745 - B3A SINE B2 -41 157 9 2 960 446 311 95 9 chr1 49177711 49177922 -148017510 - L1MC2 LINE L1 -670 5674 5446 2 960 189 0 0 0 chr1 49177956 49177977 -148017455 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 960 26 93 0 0 chr1 49178073 49178148 -148017284 + AT_rich Low_complexity Low_complexity 1 75 0 2 960 317 309 129 0 chr1 49178488 49178666 -148016766 - L1MCa LINE L1 -6245 263 63 2 960 713 261 12 6 chr1 49178666 49178828 -148016604 - RLTR20D LTR ERVK 0 568 406 2 960 1065 223 5 24 chr1 49178827 49179038 -148016394 - RLTR20D LTR ERVK -315 253 47 2 960 760 239 18 57 chr1 49179327 49179606 -148015826 - RMER3D-int LTR ERVK -1463 1379 1112 2 960 234 62 0 0 chr1 49180413 49180445 -148014987 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 960 535 226 101 34 chr1 49180501 49180680 -148014752 - RLTR16 LTR ERVK 0 505 315 2 960 213 45 87 22 chr1 49180970 49181016 -148014416 + A-rich Low_complexity Low_complexity 3 51 0 2 960 2882 85 5 2 chr1 49181328 49181727 -148013705 + MTB LTR MaLR 1 400 0 2 960 3066 264 48 4 chr1 49183359 49184187 -148011245 + Lx2B LINE L1 6134 6998 -2 2 960 237 65 0 0 chr1 49184432 49184463 -148010969 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 2 960 1233 187 94 48 chr1 49184634 49185057 -148010375 + RMER16 LTR ERVK 1 533 0 2 960 282 333 32 21 chr1 49185381 49185476 -148009956 + RSINE1 SINE B4 9 104 -61 2 960 2324 221 38 40 chr1 49185476 49186442 -148008990 - L1_Mur3 LINE L1 -3958 1922 943 2 960 200 97 32 0 chr1 49186446 49186477 -148008955 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 2 960 1323 243 10 22 chr1 49186499 49186811 -148008621 - Lx2B LINE L1 0 7000 6693 2 960 252 169 27 27 chr1 49186831 49186856 -148008576 + polypyrimidine Low_complexity Low_complexity 52 76 0 2 960 993 128 0 16 chr1 49186856 49187039 -148008393 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 960 252 169 27 27 chr1 49187039 49187086 -148008346 + polypyrimidine Low_complexity Low_complexity 4 51 0 2 960 907 138 29 9 chr1 49187104 49187430 -148008002 + CT-rich Low_complexity Low_complexity 1 332 0 2 960 1109 123 6 0 chr1 49187432 49187611 -148007821 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 960 686 103 0 0 chr1 49187618 49187715 -148007717 - B1_Mus2 SINE Alu -9 138 42 2 960 274 200 15 44 chr1 49187667 49187735 -148007697 - 4.5SRNA scRNA scRNA -8 86 21 2 960 675 292 0 53 chr1 49187769 49187975 -148007457 + RMER6D LTR ERVK 522 716 -4 2 960 405 0 0 0 chr1 49187994 49188039 -148007393 + (TTC)n Simple_repeat Simple_repeat 3 47 0 2 960 666 132 0 9 chr1 49188039 49188051 -148007381 - B1_Mus2 SINE Alu 0 147 136 2 960 991 99 0 28 chr1 49188051 49188228 -148007204 + (TTCTCC)n Simple_repeat Simple_repeat 4 175 0 2 960 666 132 0 9 chr1 49188228 49188322 -148007110 - B1_Mus2 SINE Alu -12 135 42 2 960 274 200 15 44 chr1 49188274 49188342 -148007090 - 4.5SRNA scRNA scRNA -8 86 21 2 960 719 277 0 53 chr1 49188376 49188582 -148006850 + RMER6D LTR ERVK 522 716 -4 2 960 623 13 0 13 chr1 49188601 49188678 -148006754 + (TTC)n Simple_repeat Simple_repeat 2 77 0 3 960 20338 170 63 23 chr1 49188678 49193434 -148001998 - Lx3B LINE L1 -10 6963 2008 3 960 296 64 0 21 chr1 49193434 49193482 -148001950 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 960 20338 169 70 27 chr1 49193482 49194162 -148001270 - Lx3B LINE L1 -3879 2007 1310 3 960 1016 71 7 21 chr1 49194187 49194331 -148001101 + B1_Mus2 SINE Alu 6 147 0 3 960 2926 183 21 54 chr1 49194347 49195015 -148000417 - Lx3B LINE L1 -5662 1322 690 3 960 252 285 57 8 chr1 49195038 49195162 -148000270 + L1_Rod LINE L1 5320 5449 -398 3 960 3975 153 5 70 chr1 49195163 49195395 -148000037 - L1_Mm LINE L1 -436 5447 5268 3 960 1047 103 0 20 chr1 49195395 49195544 -147999888 - B1_Mus1 SINE Alu -2 146 1 3 960 3975 153 5 70 chr1 49195544 49196111 -147999321 - L1_Mm LINE L1 -616 5267 4700 3 960 6055 122 41 21 chr1 49196111 49197243 -147998189 + L1_Mus1 LINE L1 5411 6566 -1 3 960 198 0 0 0 chr1 49197254 49197276 -147998156 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 960 4986 145 8 7 chr1 49197276 49198108 -147997324 + L1_Mus3 LINE L1 5790 6622 -16 3 960 564 29 0 0 chr1 49198191 49198261 -147997171 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 960 256 287 81 34 chr1 49198298 49198446 -147996986 + L1_Mur3 LINE L1 5596 5750 -130 3 960 26 0 0 0 chr1 49199008 49199034 -147996398 + AT_rich Low_complexity Low_complexity 1 26 0 3 960 25 31 0 0 chr1 49199302 49199334 -147996098 + AT_rich Low_complexity Low_complexity 1 32 0 3 960 336 207 16 98 chr1 49199821 49199944 -147995488 - Lx9 LINE L1 -8 7636 7524 3 960 235 79 52 82 chr1 49199973 49200070 -147995362 + (TATAA)n Simple_repeat Simple_repeat 5 98 0 3 960 724 242 0 32 chr1 49200083 49200241 -147995191 - Lx4A LINE L1 -92 6966 6814 3 960 2046 168 38 0 chr1 49200243 49200583 -147994849 + RMER17B LTR ERVK 4 356 -602 3 960 6845 99 11 1 chr1 49200583 49201602 -147993830 - L1_Mus2 LINE L1 -9 6557 5528 3 960 6129 114 2 11 chr1 49201605 49202538 -147992894 + L1_Mus2 LINE L1 4624 5548 -335 3 960 2276 174 60 42 chr1 49202538 49203101 -147992331 + RMER17B LTR ERVK 297 844 -114 3 960 1422 195 168 0 chr1 49203102 49203211 -147992221 + Lx4A LINE L1 5488 5597 -280 3 960 1104 75 7 0 chr1 49203211 49203357 -147992075 + B1_Mm SINE Alu 1 147 0 3 960 2083 193 90 55 chr1 49203357 49203598 -147991834 + Lx4A LINE L1 5626 5900 -1158 3 960 1134 81 0 0 chr1 49203598 49203746 -147991686 + B1_Mus1 SINE Alu 1 148 0 3 960 2083 193 90 55 chr1 49203746 49204068 -147991364 + Lx4A LINE L1 5901 6209 -849 3 960 21442 154 25 11 chr1 49204075 49206823 -147988609 - L1_Mur2 LINE L1 -407 5470 2697 3 960 2368 129 32 20 chr1 49206823 49207227 -147988205 + RLTR9E LTR ERVK 1 409 0 3 960 21442 154 25 11 chr1 49207227 49207859 -147987573 - L1_Mur2 LINE L1 -3181 2696 2050 3 960 209 83 28 0 chr1 49207859 49207895 -147987537 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 960 21442 154 25 11 chr1 49207895 49208619 -147986813 - L1_Mur2 LINE L1 -3828 2049 1307 3 960 2072 224 72 60 chr1 49208614 49209185 -147986247 - L1_Mur2 LINE L1 -5927 1159 582 3 960 24 53 0 0 chr1 49209324 49209362 -147986070 + AT_rich Low_complexity Low_complexity 1 38 0 3 960 23 54 0 0 chr1 49211327 49211364 -147984068 + AT_rich Low_complexity Low_complexity 1 37 0 3 960 751 283 36 7 chr1 49213118 49213399 -147982033 + Lx7 LINE L1 5675 5963 -1733 3 960 1341 303 118 34 chr1 49213385 49214184 -147981248 + Lx7 LINE L1 5753 6618 -1078 3 960 1882 177 216 20 chr1 49214744 49215285 -147980147 + RMER6C LTR ERVK 5 651 -39 3 960 961 147 40 0 chr1 49215493 49215670 -147979762 - Lx2 LINE L1 -1 6996 6813 3 960 3288 207 4 10 chr1 49217904 49218588 -147976844 - L1_Mm LINE L1 -769 5114 4435 3 960 3051 149 10 19 chr1 49218589 49219102 -147976330 + Lx LINE L1 6145 6652 -2 3 960 956 276 80 22 chr1 49219525 49219888 -147975544 - ORR1C2 LTR MaLR 0 384 1 3 960 23 0 0 0 chr1 49221496 49221519 -147973913 + AT_rich Low_complexity Low_complexity 1 23 0 3 960 3727 85 6 17 chr1 49221614 49222141 -147973291 + L1_Mus2 LINE L1 6040 6560 -6 3 960 558 0 0 0 chr1 49222547 49222609 -147972823 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 960 28 0 0 0 chr1 49223198 49223226 -147972206 + AT_rich Low_complexity Low_complexity 1 28 0 3 960 850 282 48 57 chr1 49223293 49223711 -147971721 - Lx9 LINE L1 -171 7473 7060 3 960 332 255 0 38 chr1 49223723 49223829 -147971603 - ORR1C2-int LTR MaLR -306 1203 1102 3 960 26 0 0 0 chr1 49224409 49224435 -147970997 + AT_rich Low_complexity Low_complexity 1 26 0 3 960 390 332 100 33 chr1 49225005 49225245 -147970187 + ORR1E LTR MaLR 98 353 -6 3 960 1427 277 96 65 chr1 49225489 49225598 -147969834 - RMER6C LTR ERVK 0 756 629 3 960 940 112 7 0 chr1 49225598 49225741 -147969691 - B1_Mus1 SINE Alu -1 147 4 3 960 2314 220 86 26 chr1 49225741 49226362 -147969070 - RMER6C LTR ERVK -35 655 1 3 960 448 75 0 0 chr1 49227072 49227139 -147968293 - L1Md_F2 LINE L1 -8 6574 6508 3 960 340 67 0 0 chr1 49227139 49227184 -147968248 + L1_Mus1 LINE L1 6283 6327 -240 3 960 245 29 29 0 chr1 49227623 49227657 -147967775 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 960 21 0 0 0 chr1 49227743 49227764 -147967668 + AT_rich Low_complexity Low_complexity 1 21 0 3 960 375 154 0 0 chr1 49228006 49228071 -147967361 + (ATG)n Simple_repeat Simple_repeat 2 66 0 3 960 5225 252 76 27 chr1 49228126 49229504 -147965928 + Lx6 LINE L1 5439 6882 -578 3 960 522 31 0 0 chr1 49229504 49229568 -147965864 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 960 5225 273 77 18 chr1 49229568 49229944 -147965488 + Lx6 LINE L1 6883 7281 -179 3 960 3040 175 34 8 chr1 49230291 49230756 -147964676 + Lx4B LINE L1 6256 6735 -323 3 960 522 0 0 0 chr1 49230756 49230814 -147964618 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 960 3040 175 34 8 chr1 49230814 49230935 -147964497 + Lx4B LINE L1 6736 6856 -202 3 960 2074 111 6 44 chr1 49230960 49231300 -147964132 - L1_Mus3 LINE L1 -7 6631 6305 3 960 2059 103 0 0 chr1 49231300 49231591 -147963841 + L1_Mus4 LINE L1 5702 5992 -644 3 960 7173 168 10 13 chr1 49231590 49232094 -147963338 - Lx3B LINE L1 -144 6829 6333 3 960 2859 92 10 8 chr1 49232094 49232489 -147962943 - MTA_Mm LTR MaLR 0 396 1 3 960 7173 152 58 10 chr1 49232489 49234113 -147961319 - Lx3B LINE L1 -641 6332 4637 3 960 22851 106 41 1 chr1 49234107 49239634 -147955798 - L1Md_F2 LINE L1 0 6582 503 3 960 12885 148 38 16 chr1 49239623 49242059 -147953373 - L1_Mur1 LINE L1 -1238 4648 2159 3 960 3228 187 22 60 chr1 49242056 49242679 -147952753 - L1_Mur1 LINE L1 -5775 1209 616 3 960 2547 56 77 0 chr1 49242679 49243018 -147952414 - RLTR10B2 LTR ERVK 0 365 1 3 960 3228 187 22 60 chr1 49243018 49243177 -147952255 - L1_Mur1 LINE L1 -6369 615 458 3 960 266 149 0 0 chr1 49243174 49243221 -147952211 - L1_Mur1 LINE L1 -6034 948 902 3 960 369 330 22 33 chr1 49243447 49243629 -147951803 - Lx7 LINE L1 -389 7307 7128 3 960 1669 303 31 21 chr1 49243846 49244594 -147950838 + Lx7 LINE L1 4437 5191 -689 3 960 9140 227 48 44 chr1 49244757 49245506 -147949926 + L1_Mur3 LINE L1 1291 2057 -3823 3 960 312 27 0 0 chr1 49245506 49245543 -147949889 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 960 219 36 0 0 chr1 49245543 49245570 -147949862 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 960 9140 227 48 44 chr1 49245570 49245896 -147949536 + L1_Mur3 LINE L1 2058 2391 -3489 3 960 182 91 0 29 chr1 49245896 49245930 -147949502 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 960 9140 227 48 44 chr1 49245930 49247742 -147947690 + L1_Mur3 LINE L1 2392 4189 -1691 3 960 837 261 144 25 chr1 49247877 49248281 -147947151 + Lx7 LINE L1 5698 6149 -1547 3 960 991 122 0 0 chr1 49248344 49248492 -147946940 + B1_Mus1 SINE Alu 1 148 0 3 960 270 0 0 0 chr1 49248492 49248522 -147946910 + (A)n Simple_repeat Simple_repeat 1 30 0 3 960 485 277 4 1 chr1 49248523 49248685 -147946747 + L1VL1 LINE L1 110 275 -6147 3 960 2903 200 53 10 chr1 49248819 49249495 -147945937 + Lx2 LINE L1 522 1226 -5390 3 960 3315 107 68 7 chr1 49249471 49249936 -147945496 + MusHAL1 LINE L1 1 465 -2247 3 960 543 16 0 0 chr1 49249936 49250000 -147945432 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 960 3315 107 68 7 chr1 49250000 49250110 -147945322 + MusHAL1 LINE L1 466 610 -2102 3 960 8290 220 105 66 chr1 49250086 49252194 -147943238 + Lx2 LINE L1 2496 4737 -1146 3 960 276 30 0 0 chr1 49252194 49252227 -147943205 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 960 8290 223 75 34 chr1 49252227 49254434 -147940998 + Lx2 LINE L1 4738 6992 -5 3 960 21 0 0 0 chr1 49254620 49254641 -147940791 + AT_rich Low_complexity Low_complexity 1 21 0 3 960 244 243 75 117 chr1 49255303 49255517 -147939915 + Charlie12 DNA MER1_type 2117 2321 -552 3 960 279 141 0 0 chr1 49257162 49257226 -147938206 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 960 21 82 0 0 chr1 49257778 49257827 -147937605 + AT_rich Low_complexity Low_complexity 1 49 0 3 960 355 316 0 7 chr1 49258808 49258945 -147936487 + CT-rich Low_complexity Low_complexity 3 138 0 3 960 383 268 289 35 chr1 49259267 49259278 -147936154 - ORR1C1 LTR MaLR -90 288 279 3 960 900 245 146 66 chr1 49259278 49259628 -147935804 - ORR1C1 LTR MaLR 0 378 1 3 960 383 268 289 35 chr1 49259628 49259817 -147935615 - ORR1C1 LTR MaLR -100 278 37 3 960 903 86 0 0 chr1 49260086 49260225 -147935207 + (TATG)n Simple_repeat Simple_repeat 2 140 0 3 960 625 357 98 24 chr1 49260273 49261138 -147934294 - Lx8 LINE L1 -219 7425 6346 3 960 1233 251 144 19 chr1 49261139 49261607 -147933825 - RMER19C LTR ERVK -238 664 263 3 960 1086 261 81 16 chr1 49262461 49262784 -147932648 - Lx7 LINE L1 -310 7386 7043 3 960 459 0 0 0 chr1 49262911 49262962 -147932470 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 960 23 0 0 0 chr1 49263190 49263213 -147932219 + AT_rich Low_complexity Low_complexity 1 23 0 3 960 531 313 71 27 chr1 49263228 49263412 -147932020 - B3 SINE B2 -24 192 1 3 960 252 165 43 9 chr1 49263817 49263933 -147931499 + (TA)n Simple_repeat Simple_repeat 2 121 0 3 960 17706 213 66 38 chr1 49264100 49264598 -147930834 - Lx5 LINE L1 -969 6081 5542 3 960 5265 42 15 0 chr1 49264598 49265257 -147930175 - L1Md_F2 LINE L1 -2 6580 5912 3 960 17706 209 33 51 chr1 49265257 49265542 -147929890 - Lx5 LINE L1 -336 5541 5282 3 960 364 136 0 0 chr1 49265542 49265601 -147929831 - Lx3A LINE L1 -9 6972 6914 3 960 17706 209 33 51 chr1 49265601 49267353 -147928079 - Lx5 LINE L1 -596 5281 3566 3 960 279 54 0 0 chr1 49267353 49267390 -147928042 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 960 17706 209 33 51 chr1 49267390 49267590 -147927842 - Lx5 LINE L1 -2312 3565 3391 3 960 2249 97 55 71 chr1 49267590 49267955 -147927477 - RLTR10D LTR ERVK 0 359 1 3 960 17706 209 33 51 chr1 49267955 49268753 -147926679 - Lx5 LINE L1 -2487 3390 2604 3 960 4672 161 74 18 chr1 49268753 49269253 -147926179 - RMER17B LTR ERVK 0 958 413 3 960 195 42 0 0 chr1 49269253 49269277 -147926155 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 960 4672 161 74 18 chr1 49269277 49269683 -147925749 - RMER17B LTR ERVK -546 412 3 3 960 17706 209 33 51 chr1 49269683 49270254 -147925178 - Lx5 LINE L1 -3274 2603 2043 3 960 327 25 0 0 chr1 49270254 49270294 -147925138 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 960 17706 210 93 48 chr1 49270294 49271396 -147924036 - Lx5 LINE L1 -3835 2042 882 3 960 576 65 0 0 chr1 49271869 49271946 -147923486 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 960 21 82 0 0 chr1 49272218 49272267 -147923165 + AT_rich Low_complexity Low_complexity 1 49 0 3 960 495 0 0 0 chr1 49272956 49273011 -147922421 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 960 305 281 83 30 chr1 49273345 49273477 -147921955 - RLTR15 LTR ERVK -188 171 33 3 960 536 77 13 0 chr1 49273500 49273578 -147921854 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 3 960 333 192 58 0 chr1 49273589 49273693 -147921739 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 3 960 1062 278 60 35 chr1 49274097 49274414 -147921018 + ORR1C2 LTR MaLR 1 325 -59 4 960 1433 293 51 13 chr1 49274418 49274885 -147920547 - Lx6 LINE L1 -9 7451 6967 4 960 349 90 75 0 chr1 49274887 49274948 -147920484 + ORR1C2 LTR MaLR 328 383 -1 4 960 27 49 0 0 chr1 49274965 49275006 -147920426 + AT_rich Low_complexity Low_complexity 1 41 0 4 960 28 0 0 0 chr1 49275120 49275148 -147920284 + AT_rich Low_complexity Low_complexity 1 28 0 4 960 3386 109 2 2 chr1 49275529 49276042 -147919390 - L1_Mur1 LINE L1 -1860 4026 3514 4 960 27 0 0 0 chr1 49276574 49276601 -147918831 + AT_rich Low_complexity Low_complexity 1 27 0 4 960 1148 340 46 35 chr1 49276645 49277237 -147918195 + Lx8 LINE L1 6399 6996 -477 4 960 36 40 0 0 chr1 49277716 49277766 -147917666 + AT_rich Low_complexity Low_complexity 1 50 0 4 960 4453 214 36 45 chr1 49278061 49279364 -147916068 + Lx6 LINE L1 4003 5293 -587 4 960 628 331 77 32 chr1 49279383 49279695 -147915737 - Lx5 LINE L1 -595 6455 6130 4 960 830 301 24 8 chr1 49279689 49279940 -147915492 + Lx6 LINE L1 7179 7433 -27 4 960 1431 206 96 172 chr1 49279935 49280569 -147914863 + Lx6 LINE L1 5262 5847 -33 4 960 1802 212 44 40 chr1 49280574 49281070 -147914362 + RLTR11A LTR ERVK 3 456 -72 4 960 261 0 0 0 chr1 49281070 49281099 -147914333 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 960 650 168 40 85 chr1 49281099 49281135 -147914297 + RLTR11A LTR ERVK 455 485 -42 4 960 943 111 0 0 chr1 49281135 49281270 -147914162 + B1_Mus1 SINE Alu 1 135 -13 4 960 348 24 0 0 chr1 49281270 49281311 -147914121 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 4 960 650 168 40 85 chr1 49281311 49281347 -147914085 + RLTR11A LTR ERVK 486 517 -10 4 960 560 258 39 32 chr1 49281362 49281518 -147913914 + Lx6 LINE L1 5852 6008 -1452 4 960 231 114 0 0 chr1 49281520 49281564 -147913868 + (T)n Simple_repeat Simple_repeat 1 44 0 4 960 278 26 0 25 chr1 49281666 49281706 -147913726 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 960 780 292 104 4 chr1 49281761 49282012 -147913420 + Lx6 LINE L1 6747 7022 -438 4 960 5570 118 25 43 chr1 49282019 49282942 -147912490 + Lx3_Mus LINE L1 6104 7009 0 4 960 21 0 0 0 chr1 49282947 49282968 -147912464 + AT_rich Low_complexity Low_complexity 1 21 0 4 14 341 247 0 45 chr1 49283019 49283108 -147912324 + Lx9 LINE L1 6948 7032 -612 4 961 504 59 0 0 chr1 49283134 49283202 -147912230 + B1_Mur4 SINE Alu 83 150 0 4 961 240 350 16 8 chr1 49283236 49283357 -147912075 + MLT1D LTR MaLR 384 505 0 4 961 441 0 0 0 chr1 49283612 49283661 -147911771 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 961 362 343 74 51 chr1 49284336 49284551 -147910881 - L2a LINE L2 -9 3417 3198 4 961 6942 114 12 11 chr1 49284684 49285977 -147909455 - L1_Mus4 LINE L1 -1 6635 5345 4 961 49 84 0 0 chr1 49287681 49287800 -147907632 + AT_rich Low_complexity Low_complexity 1 119 0 4 961 232 200 0 0 chr1 49287825 49287875 -147907557 - RMER15 LTR ERVL -105 470 421 4 961 2461 129 7 7 chr1 49287989 49288394 -147907038 - L1_Mur1 LINE L1 -3153 2733 2329 4 961 3395 206 86 14 chr1 49288391 49289237 -147906195 - L1_Mur1 LINE L1 -5908 1076 123 4 961 2766 221 23 30 chr1 49289239 49289739 -147905693 - Lx3C LINE L1 -210 6766 6274 4 961 3041 185 74 11 chr1 49289739 49290389 -147905043 + RLTR17 LTR ERVK 1 691 -1 4 961 2766 221 23 30 chr1 49290389 49290552 -147904880 - Lx3C LINE L1 -703 6273 6108 4 961 4263 166 44 6 chr1 49290559 49291404 -147904028 - MusHAL1 LINE L1 -927 1785 909 4 961 769 333 38 28 chr1 49291784 49292178 -147903254 + Lx8 LINE L1 6936 7333 -140 4 961 1272 89 0 0 chr1 49292178 49292358 -147903074 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 961 769 333 38 28 chr1 49292358 49292436 -147902996 + Lx8 LINE L1 7334 7413 -60 4 961 337 148 19 0 chr1 49292436 49292490 -147902942 + GA-rich Low_complexity Low_complexity 1 55 0 4 961 890 118 6 18 chr1 49292494 49292658 -147902774 + (GAA)n Simple_repeat Simple_repeat 3 164 0 4 961 1392 56 0 0 chr1 49292658 49292836 -147902596 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 961 567 207 0 0 chr1 49293838 49293973 -147901459 + (TA)n Simple_repeat Simple_repeat 2 136 0 4 961 525 16 0 0 chr1 49295503 49295565 -147899867 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 961 423 56 0 0 chr1 49295565 49295619 -147899813 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 961 545 153 0 35 chr1 49296232 49296347 -147899085 + Lx LINE L1 6542 6652 -2 4 961 21 36 0 0 chr1 49296669 49296697 -147898735 + AT_rich Low_complexity Low_complexity 1 28 0 4 961 682 108 13 13 chr1 49296902 49297052 -147898380 + RMER17B LTR ERVK 307 456 -502 4 961 483 123 0 0 chr1 49297105 49297186 -147898246 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 961 277 315 61 61 chr1 49297995 49298110 -147897322 + RMER15 LTR ERVL 329 443 -132 4 961 187 133 22 22 chr1 49298451 49298497 -147896935 + GA-rich Low_complexity Low_complexity 2 47 0 4 961 29 47 0 0 chr1 49298592 49298635 -147896797 + AT_rich Low_complexity Low_complexity 1 43 0 4 961 390 361 84 27 chr1 49298674 49299007 -147896425 + L1MC2 LINE L1 5833 6184 -160 4 961 32 57 0 0 chr1 49299117 49299170 -147896262 + AT_rich Low_complexity Low_complexity 1 53 0 4 961 29 60 0 0 chr1 49299203 49299253 -147896179 + AT_rich Low_complexity Low_complexity 1 50 0 4 961 180 0 0 0 chr1 49300742 49300762 -147894670 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 961 333 194 9 84 chr1 49301607 49301714 -147893718 + Lx6 LINE L1 7359 7457 -3 4 961 832 230 21 0 chr1 49301783 49301896 -147893536 + RMER1C Other Other 1010 1123 -219 4 961 209 83 28 0 chr1 49301896 49301932 -147893500 + (TTG)n Simple_repeat Simple_repeat 3 39 0 4 961 832 230 21 0 chr1 49301932 49302009 -147893423 + RMER1C Other Other 1124 1203 -139 4 961 566 210 51 0 chr1 49302067 49302205 -147893227 + RMER1C Other Other 1198 1342 0 4 961 558 355 41 0 chr1 49302262 49302459 -147892973 - B3 SINE B2 -2 214 10 4 961 22 35 0 0 chr1 49302475 49302504 -147892928 + AT_rich Low_complexity Low_complexity 1 29 0 4 961 3151 205 33 12 chr1 49302658 49303326 -147892106 - Lx2B LINE L1 -607 6393 5712 4 961 6179 206 48 8 chr1 49303294 49303374 -147892058 - MusHAL1 LINE L1 -1032 1680 1595 4 961 828 100 0 0 chr1 49303374 49303494 -147891938 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 4 961 6179 206 48 8 chr1 49303494 49304928 -147890504 - MusHAL1 LINE L1 -1118 1594 106 4 961 1214 237 67 28 chr1 49304928 49305291 -147890141 - MYSERV6-int LTR ERVK -721 5829 5450 4 961 324 0 0 0 chr1 49305291 49305327 -147890105 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 961 1187 54 0 0 chr1 49305328 49305477 -147889955 + L1_Mus2 LINE L1 6416 6564 -2 4 961 1214 237 67 28 chr1 49305477 49305572 -147889860 - MYSERV6-int LTR ERVK -1101 5449 5351 4 961 7131 211 55 22 chr1 49305574 49307585 -147887847 - MYSERV6-int LTR ERVK -1913 4637 2786 4 961 38858 17 11 16 chr1 49307592 49309242 -147886190 - L1Md_A LINE L1 0 6582 4928 4 961 240 167 46 77 chr1 49309242 49309307 -147886125 + RMER20A LTR ERVK 186 248 -268 4 961 38858 17 11 16 chr1 49309307 49313778 -147881654 - L1Md_A LINE L1 0 4927 439 4 961 3538 264 20 35 chr1 49313779 49315004 -147880428 - MYSERV6-int LTR ERVK -6169 2790 1585 4 961 180 0 0 0 chr1 49315342 49315362 -147880070 + (T)n Simple_repeat Simple_repeat 1 20 0 4 961 524 307 47 44 chr1 49315812 49316153 -147879279 - MYSERV6-int LTR ERVK -1695 1482 1141 4 961 445 304 46 14 chr1 49316185 49316356 -147879076 - MYSERV6-int LTR ERVK -8103 856 718 4 961 3494 18 2 0 chr1 49316356 49316751 -147878681 + MTA_Mm LTR MaLR 1 396 0 4 961 445 341 54 25 chr1 49316751 49316924 -147878508 - MYSERV6-int LTR ERVK -8242 717 532 4 961 214 125 35 70 chr1 49317153 49317211 -147878221 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 961 431 122 11 0 chr1 49317211 49317301 -147878131 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 4 961 214 125 35 70 chr1 49317301 49317328 -147878104 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 961 1993 165 17 3 chr1 49318389 49318736 -147876696 - Lx2 LINE L1 0 6997 6646 4 961 7837 186 21 11 chr1 49318743 49320378 -147875054 - L1_Mur2 LINE L1 -853 5024 3373 4 961 1246 152 22 5 chr1 49320389 49320613 -147874819 - RMER6B LTR ERVK -231 230 3 4 961 1357 102 0 5 chr1 49321041 49321228 -147874204 + B2_Mm2 SINE B2 1 186 -9 4 961 427 229 0 0 chr1 49323160 49323243 -147872189 - ORR1B1 LTR MaLR 0 394 312 4 961 2172 246 69 26 chr1 49323244 49323285 -147872147 - Lx7 LINE L1 -1144 6552 6512 4 961 189 0 0 0 chr1 49323285 49323306 -147872126 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 961 2172 246 69 26 chr1 49323306 49323927 -147871505 - Lx7 LINE L1 -1185 6511 5861 4 961 1522 198 20 24 chr1 49323933 49324304 -147871128 + RLTR19-int LTR ERVK 2867 3190 -2947 4 961 286 230 40 13 chr1 49324317 49324392 -147871040 + RLTR19-int LTR ERVK 3188 3264 -2873 4 961 2922 88 108 5 chr1 49324437 49324881 -147870551 + L1_Mus3 LINE L1 6147 6636 -2 4 961 445 212 0 140 chr1 49324951 49325231 -147870201 + RLTR19-int LTR ERVK 2403 2515 -723 4 961 453 227 54 18 chr1 49325231 49325343 -147870089 - LSU-rRNA_Hsa rRNA rRNA -718 4317 4202 4 961 661 223 21 74 chr1 49325343 49325532 -147869900 + RLTR19-int LTR ERVK 2586 2764 -474 4 961 947 153 29 0 chr1 49325532 49325702 -147869730 + L1_Mur1 LINE L1 3522 3696 -2181 4 961 5043 106 16 3 chr1 49325698 49326429 -147869003 + Lx3_Mus LINE L1 6248 6988 -21 4 961 342 0 0 0 chr1 49326429 49326467 -147868965 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 4 961 3398 168 35 7 chr1 49326468 49327082 -147868350 + L1_Mur1 LINE L1 4670 5282 -604 4 961 185 0 40 0 chr1 49327082 49327107 -147868325 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 961 3398 168 35 7 chr1 49327107 49327169 -147868263 + L1_Mur1 LINE L1 5283 5364 -522 4 961 10783 112 60 24 chr1 49327181 49329693 -147865739 + Lx3C LINE L1 262 2868 -3015 4 961 7885 119 58 13 chr1 49329688 49331050 -147864382 + Lx3C LINE L1 4163 5585 -298 4 961 6971 99 3 13 chr1 49331050 49332056 -147863376 + L1Md_F2 LINE L1 5587 6582 0 4 961 7383 163 23 55 chr1 49332056 49333690 -147861742 + Lx3C LINE L1 5552 6974 -2 4 961 696 24 0 0 chr1 49333695 49333777 -147861655 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 4 961 303 226 51 51 chr1 49333993 49334091 -147861341 + B2_Mm2 SINE B2 10 107 -88 4 961 29 78 0 0 chr1 49334132 49334196 -147861236 + AT_rich Low_complexity Low_complexity 1 64 0 4 961 273 123 131 66 chr1 49334346 49334407 -147861025 - B1_Mur2 SINE Alu -4 145 81 4 961 544 209 25 33 chr1 49334651 49334778 -147860654 + RMER19B LTR ERVK 190 349 -262 4 961 340 197 15 0 chr1 49334772 49334838 -147860594 + RMER19B LTR ERVK 705 771 -131 4 961 359 75 60 0 chr1 49335141 49335208 -147860224 + L1Md_F3 LINE L1 6514 6584 0 4 961 889 210 102 5 chr1 49335256 49335452 -147859980 + MTD LTR MaLR 197 411 -8 4 961 216 0 0 0 chr1 49336487 49336511 -147858921 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 961 24 0 0 0 chr1 49336537 49336561 -147858871 + AT_rich Low_complexity Low_complexity 1 24 0 4 961 275 71 24 0 chr1 49336668 49336710 -147858722 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 961 432 0 0 0 chr1 49338227 49338275 -147857157 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 961 213 164 32 32 chr1 49338275 49338338 -147857094 + A-rich Low_complexity Low_complexity 1 63 0 4 961 23 0 0 0 chr1 49338342 49338365 -147857067 + AT_rich Low_complexity Low_complexity 1 23 0 4 961 458 170 8 117 chr1 49338570 49338690 -147856742 + ORR1B2 LTR MaLR 3 109 -258 4 961 932 220 139 19 chr1 49338694 49339010 -147856422 - Lx4B LINE L1 0 7058 6703 4 961 1018 116 0 0 chr1 49339947 49340093 -147855339 + B1_Mus1 SINE Alu 1 146 -2 5 961 270 0 0 0 chr1 49340093 49340123 -147855309 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 961 676 194 58 6 chr1 49340139 49340295 -147855137 + Lx4B LINE L1 6558 6721 -337 5 961 7705 175 45 16 chr1 49340388 49341283 -147854149 - L1_Mur2 LINE L1 -780 5564 4625 5 961 212 59 29 0 chr1 49341283 49341317 -147854115 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 961 7705 163 44 11 chr1 49341317 49342121 -147853311 - L1_Mur2 LINE L1 -1253 4624 3783 5 961 1887 209 254 6 chr1 49342114 49343050 -147852382 - L1_Mur2 LINE L1 -2965 2921 1682 5 961 1011 264 13 8 chr1 49343074 49343311 -147852121 + ORR1B2 LTR MaLR 130 367 0 4 961 255 242 0 0 chr1 49343541 49343603 -147851829 + A-rich Low_complexity Low_complexity 1 62 0 5 961 2548 147 122 24 chr1 49343739 49344344 -147851088 + L1VL2 LINE L1 284 1045 -5290 5 961 3547 161 33 14 chr1 49344350 49344987 -147850445 + Lx LINE L1 6004 6652 -2 5 961 6438 81 5 8 chr1 49345028 49345960 -147849472 + L1_Mm LINE L1 4657 5586 -297 5 961 8094 43 9 0 chr1 49345960 49346946 -147848486 + L1Md_F2 LINE L1 5588 6582 0 5 961 568 293 19 83 chr1 49346956 49347161 -147848271 + RLTR21 LTR ERVK 1 192 -1380 5 961 553 213 65 0 chr1 49347165 49347273 -147848159 + RMER12B LTR ERVK 1290 1404 0 5 961 392 67 17 0 chr1 49348075 49348135 -147847297 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 961 441 0 0 0 chr1 49349265 49349314 -147846118 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 961 2755 63 43 0 chr1 49350748 49351098 -147844334 - RLTR10B2 LTR ERVK 0 365 1 5 961 1098 288 107 6 chr1 49351274 49351630 -147843802 - RMER19C LTR ERVK 0 611 220 5 961 3884 175 58 1 chr1 49351629 49352321 -147843111 - RMER19A LTR ERVK -6 731 1 5 961 3221 29 39 0 chr1 49352659 49353040 -147842392 - MTA_Mm LTR MaLR 0 396 1 5 961 9399 26 2 0 chr1 49353040 49354136 -147841296 - MTA_Mm-int LTR MaLR 0 1098 1 5 961 3170 37 39 0 chr1 49354136 49354517 -147840915 - MTA_Mm LTR MaLR 0 396 1 5 961 27 29 0 0 chr1 49354713 49354747 -147840685 + AT_rich Low_complexity Low_complexity 1 34 0 5 961 264 366 0 115 chr1 49355688 49355827 -147839605 - PB1 SINE Alu -2 125 3 5 961 1250 280 57 66 chr1 49356070 49356705 -147838727 + RMER6C LTR ERVK 1 629 -61 5 961 311 98 0 141 chr1 49356705 49356776 -147838656 + L1_Mur2 LINE L1 4138 4198 -1679 5 961 24 0 0 0 chr1 49356798 49356822 -147838610 + AT_rich Low_complexity Low_complexity 1 24 0 5 961 5333 186 47 10 chr1 49356835 49358088 -147837344 + L1_Mur2 LINE L1 4185 5483 -394 5 961 1803 132 67 22 chr1 49358263 49358584 -147836848 + Lx LINE L1 6281 6619 -35 5 961 4691 37 2 14 chr1 49358584 49359164 -147836268 + L1Md_F2 LINE L1 6010 6582 0 5 961 1803 132 67 22 chr1 49359164 49359199 -147836233 + Lx LINE L1 6620 6652 -2 5 961 2526 26 2 281 chr1 49359473 49360014 -147835418 - RLTR10 LTR ERVK 0 390 1 5 961 8312 23 0 3 chr1 49360016 49361014 -147834418 - RLTR10-int LTR ERVK -3 1984 990 5 961 7738 33 1 1 chr1 49361092 49362040 -147833392 - RLTR10-int LTR ERVK -999 988 41 5 961 2526 26 2 281 chr1 49362053 49362594 -147832838 - RLTR10 LTR ERVK 0 390 1 5 961 286 250 46 35 chr1 49362654 49362741 -147832691 - MTE2a LTR MaLR 0 379 292 5 961 228 272 71 36 chr1 49362780 49362864 -147832568 - MTE2a LTR MaLR -292 87 1 5 961 289 333 93 12 chr1 49363046 49363389 -147832043 + Lx9 LINE L1 7223 7593 -51 5 961 31 0 0 0 chr1 49363443 49363474 -147831958 + AT_rich Low_complexity Low_complexity 1 31 0 5 961 21 0 0 0 chr1 49366010 49366031 -147829401 + AT_rich Low_complexity Low_complexity 1 21 0 5 961 195 204 0 0 chr1 49367084 49367138 -147828294 + CT-rich Low_complexity Low_complexity 1 54 0 5 961 485 261 7 0 chr1 49367436 49367574 -147827858 + Lx7 LINE L1 7163 7301 -395 5 961 180 0 0 0 chr1 49367669 49367689 -147827743 + (GGAGA)n Simple_repeat Simple_repeat 1 20 0 5 961 774 32 0 0 chr1 49367689 49367781 -147827651 + (GAA)n Simple_repeat Simple_repeat 3 95 0 5 961 266 290 27 27 chr1 49368228 49368338 -147827094 - MLT1A1 LTR MaLR 0 408 299 5 961 284 102 20 0 chr1 49369187 49369236 -147826196 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 961 243 185 19 0 chr1 49369855 49369909 -147825523 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 961 352 369 48 30 chr1 49370054 49370219 -147825213 + B3 SINE B2 2 169 -47 5 961 531 74 0 0 chr1 49370233 49370314 -147825118 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 961 581 0 14 0 chr1 49370314 49370382 -147825050 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 961 209 254 68 27 chr1 49370399 49370472 -147824960 + L2 LINE L2 60 135 -3284 5 961 219 139 0 0 chr1 49370581 49370617 -147824815 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 961 21 36 0 0 chr1 49370808 49370836 -147824596 + AT_rich Low_complexity Low_complexity 1 28 0 5 961 833 155 32 0 chr1 49373867 49374039 -147821393 + Lx LINE L1 5914 6090 -564 5 961 2852 170 9 7 chr1 49374037 49374600 -147820832 - L1_Mur1 LINE L1 -814 5072 4509 5 961 4712 179 11 20 chr1 49374618 49375520 -147819912 + Lx2B LINE L1 6105 6998 -2 5 961 241 255 0 0 chr1 49375529 49375576 -147819856 - B2_Mm2 SINE B2 -145 50 4 5 961 734 215 0 59 chr1 49375886 49376089 -147819343 + B2_Mm2 SINE B2 2 192 -3 5 961 381 231 39 124 chr1 49376425 49376578 -147818854 + L1VL1 LINE L1 218 357 -6065 5 961 367 280 15 8 chr1 49376654 49376787 -147818645 + L1Md_F LINE L1 573 706 -5813 5 961 2199 198 14 20 chr1 49376795 49377368 -147818064 + L1_Mus2 LINE L1 617 1212 -5407 5 961 3043 117 4 9 chr1 49377334 49377879 -147817553 + MusHAL1 LINE L1 1 542 -2170 5 961 259 228 200 38 chr1 49377879 49377984 -147817448 + RLTR6_Mm LTR ERV1 1 122 -532 5 961 1953 139 242 28 chr1 49377986 49378453 -147816979 + RLTR6_Mm LTR ERV1 37 603 -51 5 961 37192 32 20 0 chr1 49378454 49383387 -147812045 + RLTR6-int LTR ERV1 1 5110 -2668 5 961 18599 42 1 0 chr1 49383383 49385692 -147809740 + RLTR6-int LTR ERV1 5468 7778 0 5 961 265 228 200 38 chr1 49385692 49385797 -147809635 + RLTR6_Mm LTR ERV1 1 122 -532 5 961 1922 138 252 29 chr1 49385799 49386247 -147809185 + RLTR6_Mm LTR ERV1 37 584 -70 5 961 14470 127 10 7 chr1 49386247 49388094 -147807338 + L1_Mus2 LINE L1 1744 3577 -2309 5 961 4899 36 10 2 chr1 49388094 49388686 -147806746 + L1Md_F3 LINE L1 5988 6584 0 5 961 18770 121 20 11 chr1 49388686 49389460 -147805972 + L1_Mus2 LINE L1 3578 4376 -1510 5 961 603 0 0 0 chr1 49389460 49389527 -147805905 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 961 18770 107 15 10 chr1 49389527 49391703 -147803729 + L1_Mus2 LINE L1 4377 6569 0 5 961 2828 41 9 11 chr1 49391803 49392150 -147803282 - ORR1A0 LTR MaLR 0 346 1 5 961 506 254 42 0 chr1 49392639 49392781 -147802651 - Lx6 LINE L1 -14 7446 7299 5 961 1595 292 75 53 chr1 49392846 49393569 -147801863 + Lx5 LINE L1 5693 6431 -619 5 961 561 194 0 9 chr1 49393572 49393681 -147801751 - L1_Mm LINE L1 -949 4934 4827 5 961 962 222 5 9 chr1 49393681 49393895 -147801537 - L1_Mur3 LINE L1 -93 5787 5575 5 961 1698 215 57 97 chr1 49393893 49394490 -147800942 - L1_Mur3 LINE L1 -1069 4811 4239 5 961 363 356 0 0 chr1 49394490 49394594 -147800838 + MTEb LTR MaLR 57 160 -219 5 961 343 263 24 9 chr1 49394642 49394737 -147800695 + MTEb LTR MaLR 276 366 -13 5 961 35 24 0 0 chr1 49394737 49394779 -147800653 + AT_rich Low_complexity Low_complexity 1 42 0 5 961 605 215 47 173 chr1 49395134 49395348 -147800084 - B3 SINE B2 -5 190 4 5 961 22 70 0 0 chr1 49395777 49395820 -147799612 + AT_rich Low_complexity Low_complexity 1 43 0 5 961 31 26 0 0 chr1 49395876 49395914 -147799518 + AT_rich Low_complexity Low_complexity 1 38 0 5 961 424 202 26 0 chr1 49395982 49396096 -147799336 - Lx9 LINE L1 -8 7636 7520 5 961 354 417 43 7 chr1 49396357 49396497 -147798935 + RSINE1 SINE B4 2 146 -19 5 961 543 69 0 0 chr1 49396692 49396764 -147798668 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 961 195 42 0 0 chr1 49396764 49396787 -147798645 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 961 291 28 0 0 chr1 49396865 49396901 -147798531 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 961 1048 85 0 47 chr1 49396902 49397050 -147798382 - B1_Mus1 SINE Alu -6 142 2 5 961 315 203 0 0 chr1 49397264 49397338 -147798094 + A-rich Low_complexity Low_complexity 1 74 0 5 961 966 143 0 0 chr1 49399256 49399403 -147796029 + B1_Mus1 SINE Alu 2 148 0 5 961 378 0 0 0 chr1 49401023 49401065 -147794367 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 961 1113 95 0 0 chr1 49401110 49401257 -147794175 + B1_Mus1 SINE Alu 2 148 0 5 961 225 94 0 0 chr1 49401257 49401289 -147794143 + (A)n Simple_repeat Simple_repeat 1 32 0 5 961 514 322 135 11 chr1 49401481 49401836 -147793596 - Lx8 LINE L1 -149 7324 6926 5 961 411 362 70 10 chr1 49401844 49402045 -147793387 + B3 SINE B2 4 216 0 5 961 1166 215 71 59 chr1 49402203 49402525 -147792907 + ORR1A4 LTR MaLR 1 326 -3 5 961 2711 216 23 153 chr1 49402530 49403399 -147792033 + ORR1A4-int LTR MaLR 3 758 -1205 5 961 697 232 0 94 chr1 49403337 49403508 -147791924 + MT2B LTR ERVL 133 287 -314 5 961 1301 202 94 14 chr1 49403467 49403819 -147791613 + ORR1A4-int LTR MaLR 718 1097 -866 5 961 486 140 108 0 chr1 49403819 49403912 -147791520 + MusHAL1 LINE L1 1156 1258 -1454 5 961 234 62 0 0 chr1 49403941 49403973 -147791459 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 961 1735 122 64 0 chr1 49403981 49404277 -147791155 + MusHAL1 LINE L1 1251 1565 -1147 5 961 272 71 24 0 chr1 49404275 49404317 -147791115 + L1_Mm LINE L1 5370 5412 -471 5 961 2099 132 86 29 chr1 49404317 49404699 -147790733 + RLTR9E LTR ERVK 1 404 -5 5 961 8025 209 21 19 chr1 49404706 49405018 -147790414 + ETnERV2-int LTR ERVK 2 313 -3001 5 961 644 36 0 12 chr1 49405018 49405102 -147790330 + (GAAAA)n Simple_repeat Simple_repeat 2 84 0 5 961 15613 212 35 25 chr1 49405102 49410583 -147784849 + ETnERV2-int LTR ERVK 314 6422 -984 5 961 482 46 0 30 chr1 49410808 49410875 -147784557 + ETnERV2-int LTR ERVK 7339 7403 -3 5 961 2259 153 10 29 chr1 49410877 49411294 -147784138 + RLTR9E LTR ERVK 1 409 0 5 961 7512 163 44 7 chr1 49411294 49412820 -147782612 + Lx2 LINE L1 5407 6994 -3 5 961 3025 163 29 2 chr1 49412821 49413338 -147782094 + ORR1A4-int LTR MaLR 1077 1607 -356 5 961 561 170 5 284 chr1 49413338 49413560 -147781872 + ORR1A4-int LTR MaLR 1535 1694 -269 5 962 2005 185 45 59 chr1 49414443 49415170 -147780262 + ORR1B1 LTR MaLR 8 394 0 5 962 3832 132 166 58 chr1 49415551 49416368 -147779064 - RMER17A2 LTR ERVK 0 906 1 5 962 405 86 0 0 chr1 49416511 49416569 -147778863 + (TTG)n Simple_repeat Simple_repeat 3 60 0 5 962 249 68 85 0 chr1 49416576 49416635 -147778797 + T-rich Low_complexity Low_complexity 2 65 0 5 962 230 340 76 32 chr1 49416710 49416987 -147778445 - B4A SINE B4 -2 290 2 5 962 24 32 0 0 chr1 49417447 49417478 -147777954 + AT_rich Low_complexity Low_complexity 1 31 0 5 962 269 351 43 0 chr1 49417524 49417618 -147777814 - B1F SINE Alu -51 98 1 5 962 356 118 15 0 chr1 49419150 49419218 -147776214 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 962 34 42 0 0 chr1 49419392 49419440 -147775992 + AT_rich Low_complexity Low_complexity 1 48 0 5 962 23 0 0 0 chr1 49419996 49420019 -147775413 + AT_rich Low_complexity Low_complexity 1 23 0 5 962 195 69 0 0 chr1 49421308 49421337 -147774095 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 962 1084 86 0 0 chr1 49421341 49421481 -147773951 - B1_Mus2 SINE Alu -6 141 2 5 962 530 230 13 20 chr1 49421970 49422121 -147773311 - L1_Rod LINE L1 -427 5420 5271 6 962 312 91 0 0 chr1 49422221 49422265 -147773167 + (T)n Simple_repeat Simple_repeat 1 44 0 6 962 553 336 40 37 chr1 49422476 49422689 -147772743 - B3A SINE B2 0 216 1 6 962 225 281 22 11 chr1 49422759 49422849 -147772583 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 6 962 30 83 0 0 chr1 49422922 49422994 -147772438 + AT_rich Low_complexity Low_complexity 1 72 0 6 962 213 267 0 0 chr1 49423408 49423468 -147771964 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 962 195 184 0 0 chr1 49423494 49423532 -147771900 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 6 962 33 0 0 0 chr1 49423550 49423583 -147771849 + AT_rich Low_complexity Low_complexity 1 33 0 6 962 26 0 0 0 chr1 49424138 49424164 -147771268 + AT_rich Low_complexity Low_complexity 1 26 0 6 962 183 100 0 0 chr1 49426072 49426102 -147769330 + (A)n Simple_repeat Simple_repeat 1 30 0 6 962 294 253 57 19 chr1 49426721 49426878 -147768554 + Lx9 LINE L1 7476 7638 -6 6 962 1753 128 64 64 chr1 49427909 49428236 -147767196 - ORR1A2 LTR MaLR 0 327 1 6 962 1749 157 2 8 chr1 49428236 49428551 -147766881 - ORR1A2-int LTR MaLR 0 1963 1676 6 962 3446 158 56 2 chr1 49428555 49429176 -147766256 - Lx3B LINE L1 0 6973 6319 6 962 729 0 0 0 chr1 49429188 49429269 -147766163 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 6 962 7552 70 1 2 chr1 49429279 49430250 -147765182 - L1Md_F2 LINE L1 -13 6569 5600 6 962 1267 117 41 0 chr1 49430252 49430449 -147764983 - Lx3B LINE L1 -672 6301 6097 6 962 3895 133 29 3 chr1 49430447 49431105 -147764327 - L1_Mur1 LINE L1 -1025 4861 4187 6 962 8078 160 76 13 chr1 49431109 49432683 -147762749 - ORR1A2-int LTR MaLR -289 1674 1 6 962 1910 161 16 0 chr1 49432683 49433005 -147762427 - ORR1A2 LTR MaLR 0 327 1 6 962 22 0 0 0 chr1 49433455 49433477 -147761955 + AT_rich Low_complexity Low_complexity 1 22 0 6 962 947 105 0 0 chr1 49434114 49434247 -147761185 - B1_Mus1 SINE Alu -12 136 4 6 962 180 0 0 0 chr1 49434324 49434344 -147761088 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 962 984 105 0 0 chr1 49434350 49434493 -147760939 - B1_Mus1 SINE Alu 0 148 6 6 962 24 67 0 0 chr1 49435384 49435429 -147760003 + AT_rich Low_complexity Low_complexity 1 45 0 6 962 29 28 0 0 chr1 49436073 49436109 -147759323 + AT_rich Low_complexity Low_complexity 1 36 0 6 962 225 277 175 16 chr1 49436389 49436518 -147758914 + MIR3 SINE MIR 33 178 -30 6 962 28 61 0 0 chr1 49436774 49436823 -147758609 + AT_rich Low_complexity Low_complexity 1 49 0 6 962 596 240 0 0 chr1 49437292 49437413 -147758019 - B3 SINE B2 -93 123 3 6 962 745 267 40 18 chr1 49438173 49438398 -147757034 - Lx9 LINE L1 -279 7365 7136 6 962 1627 127 12 85 chr1 49438398 49438717 -147756715 - L1_Mus3 LINE L1 0 6638 6343 6 962 32817 96 14 3 chr1 49438739 49444183 -147751249 - L1Md_F LINE L1 0 5883 374 6 962 234 393 43 25 chr1 49447617 49447852 -147747580 + MER47B DNA MER2_type 17 255 -163 6 962 300 207 27 0 chr1 49447918 49448029 -147747403 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 962 21 57 0 0 chr1 49448273 49448308 -147747124 + AT_rich Low_complexity Low_complexity 1 35 0 6 962 1139 117 0 6 chr1 49449234 49449415 -147746017 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 962 616 220 14 41 chr1 49449847 49449994 -147745438 - B1_Mus1 SINE Alu -1 147 5 6 962 518 0 0 16 chr1 49450077 49450140 -147745292 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 6 962 3365 185 60 9 chr1 49450142 49450796 -147744636 - Lx4B LINE L1 -21 7037 6351 6 962 781 219 0 0 chr1 49450794 49450945 -147744487 + Lx4B LINE L1 6200 6350 -708 6 962 1973 246 36 61 chr1 49451012 49451600 -147743832 - RMER15 LTR ERVL -2 573 1 6 962 442 341 52 32 chr1 49451922 49452270 -147743162 + ORR1E LTR MaLR 1 355 -4 6 962 3016 141 6 10 chr1 49452270 49452778 -147742654 - Lx3B LINE L1 -704 5182 4677 6 962 7214 150 39 20 chr1 49452779 49454551 -147740881 + Lx3B LINE L1 5177 6970 -3 6 962 221 0 0 33 chr1 49454606 49454636 -147740796 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 962 339 25 0 0 chr1 49454636 49454675 -147740757 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 962 26 30 0 0 chr1 49455470 49455503 -147739929 + AT_rich Low_complexity Low_complexity 1 33 0 6 962 368 342 0 17 chr1 49457630 49457749 -147737683 - RMER12 LTR ERVK -439 883 767 6 962 258 225 0 0 chr1 49457751 49457831 -147737601 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 962 1289 301 38 25 chr1 49457910 49458438 -147736994 + Lx9 LINE L1 6656 7190 -454 6 962 618 255 303 25 chr1 49458751 49459014 -147736418 - MTE2a LTR MaLR -35 344 1 6 962 461 315 45 63 chr1 49459126 49459513 -147735919 - L1MA5 LINE L1 -273 6027 5642 6 962 1942 160 32 44 chr1 49459513 49459925 -147735507 + RLTR9E LTR ERVK 1 407 -2 6 962 397 315 45 63 chr1 49459925 49459980 -147735452 - L1MA5 LINE L1 -659 5641 5593 6 962 1304 163 24 4 chr1 49460462 49460708 -147734724 - L1_Mur2 LINE L1 -2166 3711 3461 6 962 8259 50 1 3 chr1 49460707 49462123 -147733309 - L1Md_F3 LINE L1 0 6584 5171 6 962 684 167 0 0 chr1 49462125 49462251 -147733181 - MusHAL1 LINE L1 -435 2277 2152 6 962 1881 162 20 11 chr1 49462652 49462763 -147732669 + Lx2 LINE L1 4524 4634 -1249 6 962 459 48 0 0 chr1 49462763 49462825 -147732607 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 6 962 1881 162 20 11 chr1 49462825 49463062 -147732370 + Lx2 LINE L1 4635 4873 -1010 6 962 1078 123 17 11 chr1 49463064 49463245 -147732187 - L1_Mus3 LINE L1 0 6638 6457 6 962 7800 161 24 52 chr1 49463245 49464952 -147730480 + Lx2 LINE L1 5383 6995 -2 6 962 1004 137 5 0 chr1 49464954 49465160 -147730272 + (GAAA)n Simple_repeat Simple_repeat 1 207 0 6 962 22 35 0 0 chr1 49465252 49465281 -147730151 + AT_rich Low_complexity Low_complexity 1 29 0 6 962 306 0 0 0 chr1 49465941 49465975 -147729457 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 962 507 101 0 0 chr1 49465995 49466074 -147729358 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 962 222 118 0 0 chr1 49466373 49466407 -147729025 + (TTC)n Simple_repeat Simple_repeat 2 35 0 6 962 23 33 0 0 chr1 49467227 49467257 -147728175 + AT_rich Low_complexity Low_complexity 1 30 0 6 962 274 356 60 33 chr1 49467474 49467657 -147727775 - MLT1-int LTR MaLR -203 1168 981 6 962 5991 63 47 12 chr1 49467659 49468481 -147726951 - L1_Mus1 LINE L1 0 6567 5717 6 962 3165 149 48 23 chr1 49468518 49469075 -147726357 - Lx LINE L1 -7 6647 6077 6 962 1873 172 22 3 chr1 49469075 49469436 -147725996 - L1_Mur2 LINE L1 -543 5334 4967 6 962 410 335 32 37 chr1 49469747 49469964 -147725468 - Lx8 LINE L1 -70 7403 7188 6 962 232 150 30 91 chr1 49469986 49470052 -147725380 - Tigger1 DNA MER2_type -107 2311 2250 6 962 258 314 71 47 chr1 49470121 49470332 -147725100 - Lx8 LINE L1 -493 6980 6765 6 962 813 339 70 26 chr1 49470476 49471217 -147724215 + L1_Mur3 LINE L1 4649 5422 -458 6 962 795 323 83 66 chr1 49471304 49471848 -147723584 + MLT1-int LTR MaLR 262 814 -557 6 962 226 340 0 0 chr1 49471978 49472072 -147723360 + A-rich Low_complexity Low_complexity 1 94 0 6 962 8028 191 6 16 chr1 49472091 49472698 -147722734 + Lx2 LINE L1 4273 4876 -1007 6 962 3509 48 0 7 chr1 49472698 49473134 -147722298 - L1Md_F2 LINE L1 0 6582 6150 6 962 8028 175 5 14 chr1 49473134 49474282 -147721150 + Lx2 LINE L1 4877 6008 -989 6 962 1751 148 28 2 chr1 49474283 49474590 -147720842 - RLTR10E LTR ERVK 0 292 1 6 962 4078 151 15 3 chr1 49474595 49475272 -147720160 - IAPEY3-int LTR ERVK -1 7679 6995 6 962 1384 125 112 0 chr1 49475276 49475500 -147719932 - IAP-d-int LTR ERVK -1287 5255 5007 6 962 356 140 0 0 chr1 49475500 49475557 -147719875 - IAP-d-int LTR ERVK -6039 503 447 6 962 393 327 49 38 chr1 49475574 49475965 -147719467 - RLTR10-int LTR ERVK -6015 1566 1172 6 962 3244 164 126 84 chr1 49475991 49476943 -147718489 - RLTR10-int LTR ERVK -995 992 1 6 962 1643 182 13 19 chr1 49476946 49477259 -147718173 - RLTR10E LTR ERVK 0 311 1 6 962 4418 183 18 5 chr1 49477259 49478149 -147717283 + Lx2 LINE L1 6004 6773 -224 6 962 208 106 0 78 chr1 49478716 49478754 -147716678 + T-rich Low_complexity Low_complexity 15 50 0 6 962 1137 89 0 0 chr1 49478754 49478900 -147716532 - B1_Mm SINE Alu 0 147 2 6 962 208 106 0 78 chr1 49478900 49478912 -147716520 + T-rich Low_complexity Low_complexity 4 14 0 6 962 235 357 26 0 chr1 49479038 49479192 -147716240 + L1MA5 LINE L1 5783 5940 -360 6 962 207 171 0 0 chr1 49479569 49479604 -147715828 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 962 262 344 57 71 chr1 49479604 49479745 -147715687 + MTE2b LTR MaLR 151 289 -90 6 962 423 0 0 0 chr1 49479757 49479804 -147715628 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 962 1902 88 4 0 chr1 49479995 49480245 -147715187 - L1Md_F2 LINE L1 -351 6231 5981 6 962 1424 81 40 0 chr1 49480243 49480442 -147714990 + L1_Mus2 LINE L1 5439 5645 -921 6 962 2462 61 0 0 chr1 49480440 49480751 -147714681 + L1_Mus2 LINE L1 5797 6107 -459 6 962 336 251 75 118 chr1 49480754 49480966 -147714466 + MTE-int LTR MaLR 1255 1457 -123 6 962 889 290 63 50 chr1 49481107 49481365 -147714067 + MTE2b LTR MaLR 58 329 -50 6 962 207 0 0 0 chr1 49481365 49481388 -147714044 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 962 889 290 63 50 chr1 49481388 49481430 -147714002 + MTE2b LTR MaLR 330 362 -17 6 962 327 104 0 0 chr1 49483655 49483703 -147711729 + (TATG)n Simple_repeat Simple_repeat 2 49 0 6 962 409 372 34 7 chr1 49483716 49483862 -147711570 - RSINE1 SINE B4 -14 151 2 6 962 345 75 0 0 chr1 49483885 49483938 -147711494 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 6 962 261 304 61 20 chr1 49484197 49484345 -147711087 - L1MC3 LINE L1 -289 7706 7553 6 962 574 346 92 45 chr1 49484680 49485279 -147710153 - L1MC3 LINE L1 -1550 6235 5609 6 962 247 360 13 38 chr1 49487907 49488066 -147707366 + MLT1B LTR MaLR 16 170 -220 6 962 222 146 0 24 chr1 49488212 49488254 -147707178 + T-rich Low_complexity Low_complexity 2 42 0 6 962 30 89 0 0 chr1 49488784 49488863 -147706569 + AT_rich Low_complexity Low_complexity 1 79 0 6 962 672 289 60 45 chr1 49489021 49489354 -147706078 + Lx9 LINE L1 7036 7373 -271 6 962 522 46 0 0 chr1 49489360 49489425 -147706007 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 962 288 209 65 28 chr1 49489426 49489534 -147705898 + Lx9 LINE L1 7526 7637 -7 6 962 24 0 0 0 chr1 49489546 49489570 -147705862 + AT_rich Low_complexity Low_complexity 1 24 0 6 962 704 78 19 0 chr1 49489770 49489873 -147705559 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 6 962 276 77 0 0 chr1 49490117 49490156 -147705276 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 962 363 304 43 36 chr1 49490429 49490569 -147704863 + B1F SINE Alu 9 149 0 6 962 6639 50 6 2 chr1 49491345 49492183 -147703249 + L1Md_F2 LINE L1 4746 5586 -297 7 962 7722 57 7 2 chr1 49492184 49493162 -147702270 + L1Md_F2 LINE L1 5588 6570 -12 7 962 486 0 0 0 chr1 49493267 49493321 -147702111 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 962 403 341 100 0 chr1 49493328 49493498 -147701934 - B3 SINE B2 -29 187 1 7 962 1116 106 0 0 chr1 49493697 49493867 -147701565 + (TTCC)n Simple_repeat Simple_repeat 3 172 0 7 962 742 197 7 7 chr1 49493914 49494057 -147701375 - B1_Mur4 SINE Alu -2 148 6 7 962 1275 233 10 83 chr1 49494212 49494610 -147700822 - Lx2B LINE L1 -13 6987 6619 7 962 26 0 0 0 chr1 49494848 49494874 -147700558 + AT_rich Low_complexity Low_complexity 1 26 0 7 962 2205 112 34 0 chr1 49496824 49497145 -147698287 - Lx LINE L1 -278 6376 6045 7 962 384 165 82 0 chr1 49497142 49497239 -147698193 + Lx2 LINE L1 6805 6887 -110 7 962 556 300 84 72 chr1 49497727 49498047 -147697385 - Lx6 LINE L1 -2 7458 7135 7 962 2618 206 99 28 chr1 49498046 49498207 -147697225 + L1VL4 LINE L1 190 346 -5956 7 962 396 0 0 0 chr1 49498207 49498251 -147697181 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 962 2618 185 71 20 chr1 49498251 49498875 -147696557 + L1VL4 LINE L1 347 1028 -2531 7 962 2037 142 9 0 chr1 49498879 49499195 -147696237 - ORR1A2 LTR MaLR -8 319 1 7 962 4608 147 71 4 chr1 49499195 49500000 -147695432 - ORR1A2-int LTR MaLR 0 1963 1105 7 962 2441 206 35 36 chr1 49500001 49500980 -147694452 - ORR1A2-int LTR MaLR -860 1103 62 1 962 198 128 0 0 chr1 49501007 49501046 -147694386 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 962 441 35 0 0 chr1 49501046 49501103 -147694329 - ORR1A2-int LTR MaLR -1451 58 2 1 962 2021 146 6 12 chr1 49501104 49501431 -147694001 - ORR1A2 LTR MaLR 0 327 3 1 962 17345 195 24 12 chr1 49501431 49505267 -147690165 + L1_Mur1 LINE L1 1377 5259 -627 3 962 26 50 0 0 chr1 49505838 49505878 -147689554 + AT_rich Low_complexity Low_complexity 1 40 0 4 962 1178 242 154 21 chr1 49508964 49509348 -147686084 - Lx2 LINE L1 -8 6992 6558 5 962 827 232 11 5 chr1 49509312 49509503 -147685929 + Lx3C LINE L1 6335 6526 -450 6 962 349 313 121 8 chr1 49509685 49509817 -147685615 - B1_Mm SINE Alu 0 147 1 7 962 560 274 79 40 chr1 49509866 49510220 -147685212 - RLTR9A LTR ERVK 0 368 1 8 962 2264 189 17 47 chr1 49510730 49511400 -147684032 - RMER16-int LTR ERVK -1583 3823 3374 9 962 23 54 0 0 chr1 49511727 49511764 -147683668 + AT_rich Low_complexity Low_complexity 1 37 0 1 962 2810 121 22 130 chr1 49512042 49512366 -147683066 + L1VL4 LINE L1 432 743 -5559 1 962 948 142 0 7 chr1 49512366 49512515 -147682917 + B1_Mus1 SINE Alu 1 148 0 1 962 9664 128 10 27 chr1 49512515 49514310 -147681122 + L1VL4 LINE L1 744 2487 -1072 1 962 1088 194 14 0 chr1 49514307 49514529 -147680903 + L1_Mm LINE L1 4840 5064 -819 1 962 1262 214 0 4 chr1 49514526 49514793 -147680639 - Lx2 LINE L1 -736 6261 5996 5 962 357 24 0 0 chr1 49514883 49514925 -147680507 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1 962 3625 189 82 19 chr1 49515038 49515890 -147679542 + RMER17A2 LTR ERVK 1 906 0 1 962 665 319 34 25 chr1 49516654 49516962 -147678470 - MMERGLN-int LTR ERV1 -2321 5235 4901 1 962 492 378 11 11 chr1 49517112 49517460 -147677972 - MuRRS4-int LTR ERV1 -1817 2873 2526 1 962 603 74 0 0 chr1 49517598 49517679 -147677753 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 962 284 352 0 0 chr1 49518017 49518105 -147677327 - MuRRS4-int LTR ERV1 -5409 2192 2105 1 962 264 149 0 0 chr1 49518203 49518250 -147677182 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 962 254 258 0 0 chr1 49518328 49518390 -147677042 - MuRRS4-int LTR ERV1 -5592 2186 2125 1 962 1249 177 43 78 chr1 49518552 49519003 -147676429 + RMER17C LTR ERVK 16 439 -519 2 962 570 330 75 58 chr1 49519089 49519719 -147675713 - MuRRS4-int LTR ERV1 -5820 1736 1093 1 962 658 270 120 96 chr1 49520530 49520948 -147674484 - RLTR23 LTR ERV1 -2 428 1 2 962 516 16 0 0 chr1 49521112 49521173 -147674259 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 962 1752 181 59 6 chr1 49521173 49521513 -147673919 + RLTR9A LTR ERVK 3 360 -8 2 962 2262 151 20 124 chr1 49521514 49522052 -147673380 + RLTR45 LTR ERVK 1 482 0 2 962 387 0 0 0 chr1 49522062 49522105 -147673327 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 962 591 226 0 0 chr1 49522158 49522317 -147673115 + (TA)n Simple_repeat Simple_repeat 2 160 0 2 962 275 192 0 52 chr1 49522337 49522414 -147673018 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 962 407 309 1 10 chr1 49522414 49522583 -147672849 - L1MA8 LINE L1 -465 5826 5630 2 962 1211 54 0 0 chr1 49522583 49522730 -147672702 + B1_Mm SINE Alu 1 147 0 2 962 407 287 25 109 chr1 49522730 49523080 -147672352 - L1MA8 LINE L1 -251 5629 5364 2 962 1010 186 9 5 chr1 49523384 49523619 -147671813 - L1MA8 LINE L1 -6492 1236 935 2 962 605 158 114 0 chr1 49523906 49524020 -147671412 - RLTR22_Mur LTR ERVK -132 1716 1590 2 962 1301 116 16 0 chr1 49524207 49524397 -147671035 + B2_Mm2 SINE B2 2 194 -1 3 962 3614 183 50 24 chr1 49524490 49525127 -147670305 - RLTR22_Mur LTR ERVK -1043 805 145 2 962 506 29 0 14 chr1 49525127 49525196 -147670236 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 962 3614 183 50 24 chr1 49525196 49525343 -147670089 - RLTR22_Mur LTR ERVK -1704 144 1 2 962 3364 53 0 9 chr1 49526176 49526611 -147668821 - L1Md_F2 LINE L1 0 6582 6152 3 962 4250 155 1 60 chr1 49526673 49527235 -147668197 + Lx LINE L1 571 1107 -5550 3 962 1029 112 0 0 chr1 49527235 49527378 -147668054 + B1_Mus1 SINE Alu 1 143 -5 3 962 19303 186 19 30 chr1 49527378 49530976 -147664456 + Lx LINE L1 1108 4630 -1256 3 962 213 39 0 0 chr1 49530976 49531002 -147664430 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 962 19303 189 20 28 chr1 49531002 49531370 -147664062 + Lx LINE L1 4631 5014 -872 3 962 2731 85 21 3 chr1 49531370 49531748 -147663684 - IAPEY_LTR LTR ERVK 0 385 1 3 962 19303 189 20 28 chr1 49531748 49532176 -147663256 + Lx LINE L1 5015 5445 -441 3 962 564 73 10 10 chr1 49532177 49532274 -147663158 + L1_Mus4 LINE L1 6524 6620 -16 3 962 4583 174 13 34 chr1 49532273 49533013 -147662419 + Lx LINE L1 5760 6487 -167 3 962 2708 101 0 34 chr1 49533013 49533423 -147662009 + MTA_Mm LTR MaLR 1 396 0 3 962 4583 174 13 34 chr1 49533423 49533589 -147661843 + Lx LINE L1 6488 6647 -7 3 962 995 92 0 27 chr1 49534271 49534412 -147661020 + B1_Mus1 SINE Alu 1 138 -10 3 962 215 79 0 26 chr1 49534412 49534451 -147660981 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 962 243 0 0 0 chr1 49534507 49534534 -147660898 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 4 962 5351 105 9 21 chr1 49534568 49535376 -147660056 - L1Md_F2 LINE L1 -2 6580 5783 4 962 8060 52 4 1 chr1 49535380 49536641 -147658791 - L1Md_F2 LINE L1 -13 6569 5305 4 962 3634 143 137 8 chr1 49536644 49537412 -147658020 - Lx3A LINE L1 -7 6974 6108 4 962 3157 141 50 6 chr1 49537679 49538216 -147657216 + Lx LINE L1 6094 6654 0 4 962 426 69 0 0 chr1 49538376 49538434 -147656998 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 962 286 241 28 40 chr1 49539547 49539724 -147655708 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 4 962 228 35 0 0 chr1 49539810 49539839 -147655593 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 962 21 82 0 0 chr1 49539962 49540011 -147655421 + AT_rich Low_complexity Low_complexity 1 49 0 4 962 23 68 0 0 chr1 49540279 49540323 -147655109 + AT_rich Low_complexity Low_complexity 1 44 0 5 962 878 30 0 0 chr1 49540328 49540428 -147655004 - L1Md_F2 LINE L1 -128 6454 6355 5 962 561 68 0 0 chr1 49540601 49540675 -147654757 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 5 962 833 101 0 0 chr1 49540679 49540798 -147654634 - B1_Mus1 SINE Alu 0 148 30 5 962 207 0 0 0 chr1 49540798 49540821 -147654611 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 5 962 2178 240 53 12 chr1 49540821 49541419 -147654013 - Lx2B LINE L1 -31 6969 6347 5 962 1237 315 108 47 chr1 49541511 49542264 -147653168 - Lx7 LINE L1 -613 7083 6285 5 962 920 328 73 11 chr1 49542352 49542948 -147652484 - Lx7 LINE L1 -1741 5955 5326 5 962 1687 267 135 14 chr1 49542962 49543837 -147651595 - Lx7 LINE L1 -774 5106 4126 5 962 906 309 70 32 chr1 49543993 49544337 -147651095 - MTE2b LTR MaLR -13 366 10 5 962 23 78 0 0 chr1 49544543 49544594 -147650838 + AT_rich Low_complexity Low_complexity 1 51 0 5 120 2223 228 93 64 chr1 49545028 49545641 -147649791 + RLTR26 LTR ERVK 12 642 0 5 963 25 31 0 0 chr1 49545658 49545690 -147649742 + AT_rich Low_complexity Low_complexity 1 32 0 6 963 21 71 0 0 chr1 49546674 49546716 -147648716 + AT_rich Low_complexity Low_complexity 1 42 0 6 963 494 366 59 10 chr1 49546770 49546974 -147648458 + B4A SINE B4 38 251 -41 6 963 892 255 97 24 chr1 49547372 49547661 -147647771 + Lx6 LINE L1 7139 7448 -12 6 963 26 64 0 0 chr1 49548051 49548098 -147647334 + AT_rich Low_complexity Low_complexity 1 47 0 6 963 391 277 69 0 chr1 49548529 49548688 -147646744 + L1MA6 LINE L1 4879 5048 -1095 6 963 439 286 101 44 chr1 49548658 49549169 -147646263 + L1MA6 LINE L1 5542 6098 -202 6 963 1001 89 7 14 chr1 49549545 49549693 -147645739 + B1_Mus1 SINE Alu 2 148 0 6 963 387 0 0 0 chr1 49549818 49549861 -147645571 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 963 401 262 102 81 chr1 49551193 49551488 -147643944 - Lx7 LINE L1 0 7696 7396 6 963 361 196 201 6 chr1 49551491 49551650 -147643782 - L1_Mur3 LINE L1 -461 5419 5230 6 963 295 234 26 0 chr1 49551651 49551728 -147643704 - Lx7 LINE L1 0 7696 7618 7 963 3153 247 56 31 chr1 49551764 49552862 -147642570 - L1_Mur3 LINE L1 -1400 4480 3356 6 963 257 286 12 12 chr1 49552861 49552946 -147642486 + Lx6 LINE L1 6573 6657 -803 7 963 939 160 37 0 chr1 49552956 49553144 -147642288 + Lx2 LINE L1 6800 6994 -3 7 963 264 218 232 8 chr1 49553197 49553322 -147642110 - L1_Mur3 LINE L1 -2555 3325 3173 6 963 967 112 0 7 chr1 49553341 49553352 -147642080 - B1_Mus1 SINE Alu 0 148 138 7 963 293 47 0 23 chr1 49553352 49553396 -147642036 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 963 967 112 0 7 chr1 49553396 49553528 -147641904 - B1_Mus1 SINE Alu -11 137 6 7 963 2299 224 72 76 chr1 49553568 49554459 -147640973 - L1_Mur3 LINE L1 -2739 3141 2255 6 963 1976 211 6 48 chr1 49554473 49554952 -147640480 + RMER6B LTR ERVK 3 461 0 7 963 1147 227 55 95 chr1 49554956 49555389 -147640043 + MYSERV6-int LTR ERVK 3 418 -8541 7 963 7672 64 11 0 chr1 49555916 49557332 -147638100 - L1Md_F2 LINE L1 -19 6563 5133 7 963 201 229 0 0 chr1 49558524 49558559 -147636873 + polypurine Low_complexity Low_complexity 4 38 0 7 963 1278 85 0 0 chr1 49558559 49558736 -147636696 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 7 963 7192 195 80 20 chr1 49558736 49560417 -147635015 + MYSERV6-int LTR ERVK 391 2172 -6787 7 963 1638 143 30 20 chr1 49560443 49560743 -147634689 + MYSERV6-int LTR ERVK 4711 5013 -3946 7 963 1408 172 57 24 chr1 49560800 49561097 -147634335 + MYSERV6-int LTR ERVK 4998 5304 -3655 7 963 351 302 82 19 chr1 49561097 49561198 -147634234 - L1_Mur3 LINE L1 -6579 1149 1051 6 963 410 36 0 18 chr1 49561198 49561255 -147634177 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 963 351 302 82 19 chr1 49561255 49561359 -147634073 - L1_Mur3 LINE L1 -6678 1050 931 6 963 1636 258 24 24 chr1 49561363 49561784 -147633648 - MTC LTR MaLR 0 421 1 8 963 668 332 63 15 chr1 49561786 49562181 -147633251 - L1_Mur3 LINE L1 -6799 929 516 6 963 563 0 15 0 chr1 49562271 49562338 -147633094 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 963 699 255 136 64 chr1 49562342 49562606 -147632826 + RLTR11A LTR ERVK 1 283 -245 8 963 3545 112 130 12 chr1 49562606 49563324 -147632108 + Lx LINE L1 5664 6480 -86 8 963 651 238 20 0 chr1 49563324 49563475 -147631957 - MTC LTR MaLR -11 410 257 8 963 697 225 0 0 chr1 49563530 49563672 -147631760 + RLTR11A LTR ERVK 282 423 -105 8 963 831 55 0 0 chr1 49563709 49563818 -147631614 + (CA)n Simple_repeat Simple_repeat 2 110 0 8 963 1486 239 167 67 chr1 49564935 49565429 -147630003 + RMER19B LTR ERVK 311 865 -37 8 963 7521 34 3 0 chr1 49565429 49566322 -147629110 + L1Md_F2 LINE L1 5673 6568 -14 8 963 1486 239 167 67 chr1 49566322 49566365 -147629067 + RMER19B LTR ERVK 866 902 0 8 963 7420 175 33 8 chr1 49566408 49568101 -147627331 - Lx2 LINE L1 0 6997 5268 8 963 293 377 53 26 chr1 49568515 49568741 -147626691 + MIRb SINE MIR 1 236 -32 8 963 422 321 106 65 chr1 49569395 49569565 -147625867 + B3A SINE B2 20 196 -2 9 963 307 261 62 42 chr1 49569631 49569727 -147625705 + RMER4B LTR ERVK 80 177 -408 9 963 227 146 0 0 chr1 49569768 49569809 -147625623 + L1_Mus3 LINE L1 6572 6612 -26 9 963 21 0 0 0 chr1 49569809 49569830 -147625602 + AT_rich Low_complexity Low_complexity 1 21 0 9 963 209 33 0 32 chr1 49569830 49569861 -147625571 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 9 963 407 135 42 0 chr1 49569880 49569976 -147625456 + GA-rich Low_complexity Low_complexity 1 100 0 9 963 261 0 0 0 chr1 49570006 49570035 -147625397 + (T)n Simple_repeat Simple_repeat 1 29 0 9 963 338 333 16 16 chr1 49570047 49570169 -147625263 + RMER4B LTR ERVK 327 448 -137 9 963 3668 252 56 29 chr1 49570486 49571218 -147624214 - MYSERV-int LTR ERVK -2 6548 5811 9 963 273 57 0 0 chr1 49571218 49571253 -147624179 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 963 3668 252 56 29 chr1 49571253 49571732 -147623700 - MYSERV-int LTR ERVK -740 5810 5306 9 963 397 285 120 12 chr1 49571735 49571902 -147623530 - RMER4A LTR ERVK -30 436 252 9 963 256 147 13 13 chr1 49571902 49571978 -147623454 + A-rich Low_complexity Low_complexity 2 77 0 1 963 1563 66 5 5 chr1 49572031 49572243 -147623189 - L1_Mus1 LINE L1 0 6567 6356 1 963 3080 122 28 4 chr1 49572245 49572740 -147622692 + L1_Mm LINE L1 4347 4853 -1030 1 963 354 320 90 0 chr1 49572758 49572880 -147622552 - MYSERV-int LTR ERVK -1575 4975 4843 9 963 261 235 37 47 chr1 49573222 49573329 -147622103 - MYSERV-int LTR ERVK -1985 4565 4460 9 963 188 67 33 0 chr1 49573334 49573364 -147622068 + (TCTCC)n Simple_repeat Simple_repeat 4 34 0 1 963 5361 195 42 25 chr1 49573469 49573526 -147621906 - MYSERV6-int LTR ERVK -4375 4584 4530 1 963 5792 75 24 34 chr1 49573526 49573936 -147621496 + RLTR13B2 LTR ERVK 1 397 -425 1 963 648 0 0 0 chr1 49573936 49574008 -147621424 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 963 5792 75 24 34 chr1 49574008 49574427 -147621005 + RLTR13B2 LTR ERVK 398 820 -2 1 963 5361 195 42 25 chr1 49574427 49574782 -147620650 - MYSERV6-int LTR ERVK -4430 4529 4163 1 963 206 32 0 31 chr1 49574782 49574814 -147620618 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 963 1161 36 0 0 chr1 49574814 49574952 -147620480 - B1_Mm SINE Alu -8 139 2 1 963 5361 195 42 25 chr1 49574952 49575799 -147619633 - MYSERV6-int LTR ERVK -4797 4162 3303 1 963 2181 306 47 26 chr1 49575833 49576721 -147618711 - MYSERV6-int LTR ERVK -724 2453 1454 1 963 2841 98 5 5 chr1 49576755 49577176 -147618256 + BGLII LTR ERVK 1 421 0 1 963 560 80 0 0 chr1 49577582 49577670 -147617762 + RMER3D-int LTR ERVK 489 564 -2278 1 963 638 223 35 35 chr1 49577685 49577936 -147617496 + RMER3D-int LTR ERVK 652 849 -1993 1 963 513 203 116 19 chr1 49577966 49578211 -147617221 + RMER3D-int LTR ERVK 331 583 -2259 1 963 233 167 36 36 chr1 49578222 49578278 -147617154 + GA-rich Low_complexity Low_complexity 5 60 0 1 963 1841 194 113 23 chr1 49578323 49578765 -147616667 + RMER3D-int LTR ERVK 1014 1495 -1347 1 963 356 250 29 29 chr1 49578770 49578910 -147616522 - MYSERV6-int LTR ERVK -6353 197 58 1 963 22 35 0 0 chr1 49578979 49579008 -147616424 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 330 184 0 0 chr1 49579324 49579400 -147616032 - L1Md_A LINE L1 -2 6580 6505 1 963 2120 78 0 0 chr1 49579400 49579683 -147615749 + L1_Mus1 LINE L1 5859 6141 -426 1 963 452 297 60 32 chr1 49580497 49580713 -147614719 - RLTR12B LTR ERVK -48 480 259 1 963 3438 191 54 70 chr1 49580752 49581592 -147613840 + RLTR25B LTR ERVK 3 828 -200 1 963 337 292 19 19 chr1 49581563 49581671 -147613761 + RLTR25B LTR ERVK 972 1079 -24 1 963 484 335 69 29 chr1 49581609 49581883 -147613549 - RLTR12B LTR ERVK -202 326 42 1 963 201 74 0 0 chr1 49582081 49582108 -147613324 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 963 212 281 30 30 chr1 49583976 49584042 -147611390 + ID4_ SINE ID 12 77 -6 1 963 296 364 13 59 chr1 49584323 49584475 -147610957 - RSINE1 SINE B4 -10 155 11 1 963 798 223 32 5 chr1 49584857 49585042 -147610390 + ORR1D1 LTR MaLR 1 190 -184 1 963 21 0 0 0 chr1 49585319 49585340 -147610092 + AT_rich Low_complexity Low_complexity 1 21 0 1 963 284 150 50 0 chr1 49585926 49586006 -147609426 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 963 348 155 0 0 chr1 49586032 49586103 -147609329 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 963 393 175 0 0 chr1 49586193 49586296 -147609136 + CT-rich Low_complexity Low_complexity 2 104 0 1 963 570 78 13 0 chr1 49586739 49586816 -147608616 + Lx3_Mus LINE L1 6310 6387 -622 1 963 506 175 0 19 chr1 49586815 49586920 -147608512 - L1_Mm LINE L1 -856 5027 4925 1 963 6898 103 7 6 chr1 49586921 49587933 -147607499 + L1_Mus3 LINE L1 5621 6633 -5 1 963 337 261 55 34 chr1 49587953 49588101 -147607331 + Lx8 LINE L1 5695 5881 -308 1 963 185 65 32 0 chr1 49588552 49588583 -147606849 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 963 3165 29 0 0 chr1 49588811 49589187 -147606245 - L1Md_T LINE L1 0 6582 6207 1 963 764 57 0 19 chr1 49589284 49589391 -147606041 + (GAAAA)n Simple_repeat Simple_repeat 5 109 0 1 963 1915 187 238 28 chr1 49589967 49590472 -147604960 - RMER19C LTR ERVK 0 611 1 1 963 21 36 0 0 chr1 49591096 49591124 -147604308 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 3091 227 33 8 chr1 49592078 49592713 -147602719 + Lx5 LINE L1 6398 7048 -2 1 963 364 347 30 35 chr1 49593800 49593853 -147601579 - B3A SINE B2 -13 203 154 1 963 2923 66 200 9 chr1 49593853 49594283 -147601149 - RLTR1B LTR ERV1 0 512 1 1 963 364 326 34 41 chr1 49594283 49594396 -147601036 - B3A SINE B2 -44 154 37 1 963 321 88 0 34 chr1 49595262 49595321 -147600111 + B1_Mur4 SINE Alu 94 150 0 1 963 375 23 0 0 chr1 49595326 49595370 -147600062 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 963 249 83 0 0 chr1 49595372 49595408 -147600024 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 963 519 90 35 12 chr1 49595616 49595716 -147599716 + B1_Mm SINE Alu 53 149 0 1 963 180 0 0 0 chr1 49595727 49595747 -147599685 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 963 5138 61 5 3 chr1 49596237 49596898 -147598534 + L1Md_F2 LINE L1 5909 6570 -12 1 963 456 290 29 64 chr1 49596903 49597043 -147598389 + B3 SINE B2 40 174 -42 1 963 21 57 0 0 chr1 49597146 49597181 -147598251 + AT_rich Low_complexity Low_complexity 1 35 0 1 963 23527 159 30 106 chr1 49597193 49600610 -147594822 + L1_Mus2 LINE L1 240 3018 -2865 1 963 5240 60 10 7 chr1 49600610 49601299 -147594133 + L1Md_F3 LINE L1 5892 6582 -2 1 963 23527 119 18 87 chr1 49601299 49604781 -147590651 + L1_Mus2 LINE L1 3019 6566 0 1 963 26 50 0 0 chr1 49604800 49604840 -147590592 + AT_rich Low_complexity Low_complexity 1 40 0 1 963 26 30 0 0 chr1 49604880 49604913 -147590519 + AT_rich Low_complexity Low_complexity 1 33 0 1 963 737 254 177 13 chr1 49605356 49605725 -147589707 + Lx9 LINE L1 7212 7641 -3 1 963 210 276 20 10 chr1 49605803 49605902 -147589530 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 963 3949 20 0 0 chr1 49606207 49606664 -147588768 + L1Md_T LINE L1 5129 5585 -298 1 963 8297 40 0 0 chr1 49606665 49607659 -147587773 + L1Md_T LINE L1 5587 6580 -2 1 963 1862 189 119 24 chr1 49607994 49608449 -147586983 - Lx3_Mus LINE L1 0 7009 6512 1 963 202 188 0 0 chr1 49608449 49608481 -147586951 + polypyrimidine Low_complexity Low_complexity 2 33 0 1 963 1565 159 51 18 chr1 49608481 49608920 -147586512 - Lx3_Mus LINE L1 -858 6118 5662 1 963 965 156 6 0 chr1 49608920 49609099 -147586333 + L1_Mur1 LINE L1 3005 3184 -2702 1 963 5345 85 36 17 chr1 49609112 49609880 -147585552 - L1_Mus1 LINE L1 0 6567 5785 1 963 968 119 7 0 chr1 49609880 49610031 -147585401 - L1_Mm LINE L1 -576 5307 5156 1 963 9609 108 152 16 chr1 49610032 49611773 -147583659 + L1_Mur1 LINE L1 3169 5146 -740 1 963 792 287 80 80 chr1 49611763 49612266 -147583166 - Lx9 LINE L1 -297 7347 6845 1 963 24 53 0 0 chr1 49613256 49613294 -147582138 + AT_rich Low_complexity Low_complexity 1 38 0 1 963 527 340 10 30 chr1 49613458 49613655 -147581777 - ORR1E LTR MaLR -166 193 1 1 963 347 226 10 0 chr1 49614330 49614432 -147581000 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 963 492 188 6 41 chr1 49615046 49615218 -147580214 + CT-rich Low_complexity Low_complexity 2 167 0 1 963 1269 233 11 144 chr1 49616264 49616484 -147578948 - ORR1C1 LTR MaLR 0 378 175 1 963 1475 156 41 4 chr1 49616484 49616754 -147578678 - Lx LINE L1 -3 6651 6372 1 963 1269 233 11 144 chr1 49616754 49616969 -147578463 - ORR1C1 LTR MaLR -204 174 1 1 963 186 43 0 0 chr1 49617238 49617261 -147578171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 963 478 299 151 24 chr1 49617793 49618289 -147577143 - L1_Mur3 LINE L1 -667 5633 5044 1 963 230 116 23 0 chr1 49619208 49619251 -147576181 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 1 963 1100 237 72 9 chr1 49619273 49619592 -147575840 - Lx9 LINE L1 -627 7017 6679 1 963 1959 238 60 22 chr1 49619595 49620228 -147575204 - Lx9 LINE L1 -1679 5965 5270 1 963 1632 32 0 0 chr1 49620631 49620819 -147574613 + B2_Mm1t SINE B2 1 188 -5 1 963 931 286 69 47 chr1 49620928 49621358 -147574074 + BGLII_B LTR ERVK 1 432 -260 1 963 519 204 49 0 chr1 49621462 49621604 -147573828 + Lx9 LINE L1 7488 7636 -8 1 963 817 7 78 0 chr1 49621732 49621874 -147573558 + (TTTTA)n Simple_repeat Simple_repeat 2 154 0 1 963 1056 88 0 0 chr1 49621874 49622011 -147573421 - B1_Mm SINE Alu -10 137 1 1 963 249 33 0 0 chr1 49622012 49622042 -147573390 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 963 788 179 50 0 chr1 49622042 49622203 -147573229 - B2_Mm2 SINE B2 -14 202 3 1 963 372 295 24 58 chr1 49622214 49622419 -147573013 - L1_Rod LINE L1 -2956 2891 2694 1 963 1552 265 68 16 chr1 49622414 49623131 -147572301 - L1_Rod LINE L1 -4337 1510 751 1 963 284 267 39 62 chr1 49623178 49623306 -147572126 - L1_Rod LINE L1 -6977 631 507 1 963 1739 237 14 3 chr1 49623465 49623833 -147571599 - ORR1C1 LTR MaLR -6 372 1 1 963 2456 231 58 9 chr1 49623833 49624414 -147571018 - ORR1C1-int LTR MaLR 0 1509 900 1 963 299 137 0 14 chr1 49624418 49624492 -147570940 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 1 963 1729 314 26 14 chr1 49624508 49625180 -147570252 - ORR1C1-int LTR MaLR -613 757 76 1 963 279 230 68 0 chr1 49625588 49625662 -147569770 - ORR1C1-int LTR MaLR -1883 80 2 1 963 1260 223 46 82 chr1 49625664 49626055 -147569377 - ORR1C1 LTR MaLR -1 377 1 1 963 477 62 0 0 chr1 49626216 49626281 -147569151 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 963 414 172 0 0 chr1 49626283 49626382 -147569050 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 963 25 0 0 0 chr1 49626418 49626443 -147568989 + AT_rich Low_complexity Low_complexity 1 25 0 1 963 23 68 0 0 chr1 49627638 49627682 -147567750 + AT_rich Low_complexity Low_complexity 1 44 0 1 963 6109 142 22 1 chr1 49628163 49629413 -147566019 - Lx2 LINE L1 -417 6580 5290 1 963 949 332 56 27 chr1 49629427 49629802 -147565630 - MTD LTR MaLR -16 403 18 1 963 276 102 0 0 chr1 49629810 49629859 -147565573 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 963 22 0 0 0 chr1 49630388 49630410 -147565022 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 35 71 0 0 chr1 49630689 49630759 -147564673 + AT_rich Low_complexity Low_complexity 1 70 0 1 963 357 347 114 4 chr1 49630829 49631075 -147564357 - B4A SINE B4 -18 274 2 1 963 495 0 0 0 chr1 49631169 49631224 -147564208 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 963 22 35 0 0 chr1 49631399 49631428 -147564004 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 692 364 49 45 chr1 49631488 49632000 -147563432 - Lx8 LINE L1 -181 7292 6779 1 963 331 176 43 21 chr1 49633035 49633128 -147562304 - Lx9 LINE L1 -141 7503 7409 1 963 258 245 0 115 chr1 49633504 49633661 -147561771 - Lx9 LINE L1 -39 7605 7467 1 963 791 316 69 62 chr1 49633714 49634263 -147561169 - Lx9 LINE L1 -311 7333 6781 1 963 278 350 99 33 chr1 49634600 49634813 -147560619 - MLT-int LTR MaLR -1081 654 428 1 963 1943 200 23 5 chr1 49634950 49635337 -147560095 - ORR1B1 LTR MaLR 0 394 1 1 963 1676 227 47 3 chr1 49635337 49635717 -147559715 - ORR1B1-int LTR MaLR 0 1509 1113 1 963 222 37 0 0 chr1 49635722 49635749 -147559683 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 963 964 248 43 6 chr1 49636347 49636630 -147558802 - ORR1B1-int LTR MaLR -368 1212 920 1 963 1028 174 208 4 chr1 49636628 49636864 -147558568 - RMER6C LTR ERVK -406 284 1 1 963 663 48 0 0 chr1 49636879 49636962 -147558470 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 963 1644 173 12 15 chr1 49636962 49637291 -147558141 + L1_Mur2 LINE L1 3917 4244 -1633 2 963 1294 287 62 78 chr1 49637341 49637734 -147557698 - L1_Rod LINE L1 -1681 4166 3754 2 963 249 33 0 0 chr1 49637734 49637764 -147557668 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 963 1294 287 62 78 chr1 49637764 49637816 -147557616 - L1_Rod LINE L1 -2094 3753 3727 2 963 5892 82 5 1 chr1 49637816 49638610 -147556822 - L1_Mus2 LINE L1 0 6566 5770 2 963 1294 287 62 78 chr1 49638610 49639155 -147556277 - L1_Rod LINE L1 -2121 3726 3191 2 963 627 161 0 0 chr1 49639155 49639273 -147556159 + A-rich Low_complexity Low_complexity 1 118 0 2 963 870 263 93 17 chr1 49639494 49639912 -147555520 - L1_Rod LINE L1 -2857 2990 2541 2 963 29 0 0 0 chr1 49639932 49639961 -147555471 + AT_rich Low_complexity Low_complexity 1 29 0 2 963 8856 8 3 2 chr1 49639962 49641080 -147554352 - L1Md_T LINE L1 0 6582 5464 2 963 7112 18 0 0 chr1 49641076 49641905 -147553527 + L1Md_T LINE L1 4623 5451 -432 2 963 189 107 0 0 chr1 49641992 49642020 -147553412 + (T)n Simple_repeat Simple_repeat 1 28 0 2 963 1639 295 33 35 chr1 49642020 49642903 -147552529 - L1_Rod LINE L1 -3448 2399 1519 2 963 396 0 0 0 chr1 49642905 49642949 -147552483 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 963 386 114 14 0 chr1 49642962 49643032 -147552400 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 963 503 323 42 48 chr1 49643035 49643347 -147552085 - RMER5 LTR ERV1 -8 526 217 2 963 6837 36 0 0 chr1 49643606 49644418 -147551014 - L1Md_T LINE L1 -2 6580 5769 2 963 7420 72 1 1 chr1 49644418 49645399 -147550033 + L1_Mm LINE L1 4165 5145 -738 2 963 10138 107 20 6 chr1 49645822 49647923 -147547509 - L1_Mus2 LINE L1 -217 6349 4217 2 963 7280 172 45 38 chr1 49647919 49649881 -147545551 - L1_Mus2 LINE L1 -3470 2413 439 2 963 241 254 0 17 chr1 49649983 49650043 -147545389 + MLT1B LTR MaLR 107 165 -225 2 963 240 250 25 0 chr1 49650604 49650684 -147544748 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 963 699 304 41 4 chr1 49650761 49651028 -147544404 - Lx6 LINE L1 -11 7449 7173 2 963 10546 186 34 12 chr1 49651025 49654254 -147541178 + Lx2 LINE L1 3551 6991 -6 2 963 6206 213 103 69 chr1 49654256 49656283 -147539149 - MYSERV16_I-int LTR ERVK -19 2307 211 2 963 339 160 53 13 chr1 49656325 49656401 -147539031 - Lx3B LINE L1 -645 6328 6250 2 963 544 178 10 29 chr1 49656399 49656503 -147538929 + Lx3C LINE L1 6140 6241 -735 2 963 692 230 23 17 chr1 49656505 49656682 -147538750 - MYSERV16_I-int LTR ERVK -2114 212 35 2 963 1058 75 7 46 chr1 49656686 49656839 -147538593 - B1_Mm SINE Alu 0 147 1 2 963 288 333 39 39 chr1 49657078 49657206 -147538226 - B1_Mus1 SINE Alu -2 146 19 2 963 1194 251 36 89 chr1 49657967 49658036 -147537396 - RLTR11A LTR ERVK 0 528 462 2 963 332 59 0 19 chr1 49658036 49658088 -147537344 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 963 1194 247 181 63 chr1 49658088 49658498 -147536934 - RLTR11A LTR ERVK -67 461 4 2 963 6648 209 38 51 chr1 49658500 49659323 -147536109 - L1_Mur3 LINE L1 -358 5522 4667 2 963 288 0 0 0 chr1 49659323 49659355 -147536077 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 963 3545 178 30 8 chr1 49659357 49660024 -147535408 - Lx LINE L1 -8 6646 5965 2 963 6648 209 38 51 chr1 49660024 49661035 -147534397 - L1_Mur3 LINE L1 -1214 4666 3716 2 963 306 194 29 29 chr1 49661623 49661692 -147533740 - PB1D10 SINE Alu -6 111 43 2 963 38199 55 5 4 chr1 49661697 49667916 -147527516 - L1Md_T LINE L1 0 6582 400 2 963 2831 58 0 0 chr1 49667916 49668277 -147527155 - L1Md_F2 LINE L1 -8 6574 6214 2 963 24 67 0 0 chr1 49668834 49668879 -147526553 + AT_rich Low_complexity Low_complexity 1 45 0 2 963 23 33 0 0 chr1 49668935 49668965 -147526467 + AT_rich Low_complexity Low_complexity 1 30 0 2 963 2113 264 22 45 chr1 49668978 49669557 -147525875 - Lx5 LINE L1 -51 6999 6434 2 963 1145 126 21 16 chr1 49669820 49670013 -147525419 - B2_Mm2 SINE B2 -1 194 1 2 963 24 0 0 0 chr1 49671666 49671690 -147523742 + AT_rich Low_complexity Low_complexity 1 24 0 2 963 28 0 0 0 chr1 49672100 49672128 -147523304 + AT_rich Low_complexity Low_complexity 1 28 0 2 963 697 276 71 52 chr1 49672136 49672346 -147523086 - B3 SINE B2 -2 214 1 2 963 4790 45 28 7 chr1 49672458 49673065 -147522367 + L1Md_F3 LINE L1 5953 6572 -12 2 963 561 42 0 0 chr1 49673118 49673190 -147522242 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 963 356 256 53 16 chr1 49673267 49673427 -147522005 - L1M3 LINE L1 -739 5620 5454 2 963 326 292 71 20 chr1 49673558 49673754 -147521678 + RLTR16 LTR ERVK 1 206 -299 2 963 272 290 41 51 chr1 49673809 49673907 -147521525 + RLTR17 LTR ERVK 337 433 -259 2 963 186 43 0 0 chr1 49674246 49674269 -147521163 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 963 1795 236 3 11 chr1 49674349 49674726 -147520706 + Lx4A LINE L1 6086 6459 -599 2 963 2888 200 26 14 chr1 49674726 49675303 -147520129 + RLTR17 LTR ERVK 109 692 0 2 963 2862 165 61 30 chr1 49675303 49675841 -147519591 + Lx4A LINE L1 6503 7057 -1 2 963 27 0 0 0 chr1 49675841 49675868 -147519564 + AT_rich Low_complexity Low_complexity 1 27 0 2 964 180 125 0 0 chr1 49676775 49676807 -147518625 + (A)n Simple_repeat Simple_repeat 1 32 0 2 964 3605 282 69 23 chr1 49677052 49678200 -147517232 - Lx6 LINE L1 -169 7291 6091 2 964 393 153 0 0 chr1 49678572 49678644 -147516788 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 964 27 0 0 0 chr1 49680008 49680035 -147515397 + AT_rich Low_complexity Low_complexity 1 27 0 2 964 189 74 0 0 chr1 49680621 49680648 -147514784 + (GGGAA)n Simple_repeat Simple_repeat 2 28 0 2 964 466 254 8 42 chr1 49681479 49681662 -147513770 + L1M2 LINE L1 4489 4644 -1496 2 964 263 134 30 0 chr1 49681769 49681836 -147513596 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 2 964 303 93 0 0 chr1 49681829 49681872 -147513560 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 2 964 548 320 17 17 chr1 49681872 49682050 -147513382 - B3A SINE B2 -17 181 4 2 964 201 74 0 0 chr1 49682303 49682330 -147513102 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 964 251 28 0 27 chr1 49682415 49682452 -147512980 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 964 1420 97 0 0 chr1 49682452 49682647 -147512785 - L1_Mus1 LINE L1 -10 6557 6363 2 964 1174 69 0 11 chr1 49682648 49682824 -147512608 + (GAAAA)n Simple_repeat Simple_repeat 2 175 0 2 964 489 154 8 24 chr1 49682827 49682849 -147512583 + polypurine Low_complexity Low_complexity 4 25 0 2 964 1105 98 17 0 chr1 49682849 49683022 -147512410 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2 964 489 154 8 24 chr1 49683022 49683125 -147512307 + GA-rich Low_complexity Low_complexity 26 127 0 2 964 2039 131 24 9 chr1 49683125 49683465 -147511967 + Lx3_Mus LINE L1 6649 6993 -16 2 964 29 78 0 0 chr1 49683708 49683772 -147511660 + AT_rich Low_complexity Low_complexity 1 64 0 2 964 235 355 81 16 chr1 49684370 49684493 -147510939 + B1_Mur3 SINE Alu 2 132 -17 2 964 543 343 23 69 chr1 49685148 49685364 -147510068 + B4A SINE B4 79 284 -8 2 964 220 303 13 0 chr1 49685367 49685443 -147509989 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 2 964 521 269 30 23 chr1 49685488 49685621 -147509811 - B1_Mur2 SINE Alu -15 134 1 2 964 3690 159 7 5 chr1 49687364 49687964 -147507468 + MT2B LTR ERVL 1 601 0 2 964 259 287 10 31 chr1 49688298 49688395 -147507037 - Lx9 LINE L1 -365 7279 7185 2 964 359 304 62 6 chr1 49688449 49688611 -147506821 - Lx9 LINE L1 -594 7050 6880 2 964 711 0 0 0 chr1 49688786 49688865 -147506567 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 2 964 387 0 0 0 chr1 49688996 49689039 -147506393 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 2 964 24 77 0 0 chr1 49689802 49689854 -147505578 + AT_rich Low_complexity Low_complexity 1 52 0 2 964 2311 23 0 0 chr1 49690179 49690444 -147504988 + L1Md_T LINE L1 5322 5586 -297 2 964 8302 41 0 0 chr1 49690444 49691440 -147503992 + L1Md_T LINE L1 5587 6582 0 2 964 315 281 11 46 chr1 49691623 49691798 -147503634 + GA-rich Low_complexity Low_complexity 1 169 0 2 964 24 53 0 0 chr1 49692328 49692366 -147503066 + AT_rich Low_complexity Low_complexity 1 38 0 2 964 27 87 0 0 chr1 49692743 49692812 -147502620 + AT_rich Low_complexity Low_complexity 1 69 0 2 964 729 185 0 17 chr1 49693111 49693292 -147502140 + CT-rich Low_complexity Low_complexity 3 180 0 2 964 2061 122 30 9 chr1 49693298 49693636 -147501796 - Lx LINE L1 -6 6648 6304 2 964 471 150 25 0 chr1 49693636 49693716 -147501716 - L1_Mur2 LINE L1 -740 5137 5056 2 964 7322 48 0 3 chr1 49693911 49694810 -147500622 - L1Md_F2 LINE L1 0 6582 5687 2 964 12359 95 4 0 chr1 49694805 49697395 -147498037 - L1Md_F LINE L1 -2901 2982 383 2 964 1104 277 56 92 chr1 49697506 49697587 -147497845 + RLTR20B1 LTR ERVK 185 261 -302 2 964 7412 68 9 5 chr1 49697587 49698563 -147496869 + L1Md_F2 LINE L1 5590 6569 -13 2 964 5633 96 13 7 chr1 49698558 49699379 -147496053 + L1_Mus2 LINE L1 5741 6566 0 2 964 1104 277 56 92 chr1 49699379 49699689 -147495743 + RLTR20B1 LTR ERVK 262 562 -1 2 964 5616 201 14 5 chr1 49699689 49701161 -147494271 - Lx2B LINE L1 -329 6671 5179 2 964 1461 182 32 10 chr1 49701158 49701468 -147493964 + Lx2B LINE L1 4873 5189 -688 2 964 4424 175 17 6 chr1 49701757 49702562 -147492870 - Lx2B LINE L1 -426 6574 5761 2 964 469 169 0 11 chr1 49702558 49702648 -147492784 - Lx2B LINE L1 -519 5358 5270 2 964 3121 163 60 9 chr1 49702648 49703281 -147492151 - Lx2B LINE L1 -748 5129 4465 2 964 665 61 0 25 chr1 49703282 49703400 -147492032 - L1Md_F3 LINE L1 0 6584 6470 2 964 4784 40 2 0 chr1 49703394 49703973 -147491459 - L1Md_A LINE L1 -2 6580 6001 2 964 660 36 44 26 chr1 49704028 49704141 -147491291 + L1Md_F3 LINE L1 6470 6584 0 2 964 504 146 11 0 chr1 49704142 49704231 -147491201 + L1_Mur2 LINE L1 4463 4552 -1325 2 964 17234 145 86 21 chr1 49704239 49707957 -147487475 - L1Md_A LINE L1 -588 5994 2011 2 964 459 107 0 0 chr1 49708453 49708528 -147486904 + (T)n Simple_repeat Simple_repeat 1 75 0 2 964 1125 68 0 0 chr1 49708528 49708674 -147486758 - B1_Mm SINE Alu 0 147 2 2 964 16327 184 18 10 chr1 49711285 49712620 -147482812 + Lx LINE L1 2539 3857 -2026 2 964 225 0 0 0 chr1 49712620 49712645 -147482787 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 964 16327 165 21 8 chr1 49712645 49714961 -147480471 + Lx LINE L1 3858 6219 -435 2 964 316 380 23 9 chr1 49715269 49715484 -147479948 + ID_B1 SINE B4 2 219 -5 2 964 182 136 0 22 chr1 49715842 49715887 -147479545 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 964 3201 192 18 34 chr1 49715889 49716260 -147479172 + Lx4A LINE L1 678 1039 -6047 3 964 323 105 18 0 chr1 49716260 49716317 -147479115 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 964 13743 168 50 45 chr1 49716317 49717357 -147478075 + Lx4A LINE L1 1040 2062 -3815 3 964 810 21 0 0 chr1 49717357 49717453 -147477979 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 964 13743 164 56 47 chr1 49717453 49718221 -147477211 + Lx4A LINE L1 2063 2829 -3048 3 964 4545 171 40 9 chr1 49718221 49719078 -147476354 + Lx3B LINE L1 6088 6970 -3 3 964 13743 164 56 47 chr1 49719078 49719091 -147476341 + Lx4A LINE L1 2830 2830 -3047 3 964 807 40 0 0 chr1 49719091 49719190 -147476242 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 964 13743 164 56 47 chr1 49719190 49720670 -147474762 + Lx4A LINE L1 2830 4375 -1502 3 964 8076 151 36 9 chr1 49720672 49722334 -147473098 + Lx4A LINE L1 5336 7051 -7 3 964 333 0 0 0 chr1 49723255 49723292 -147472140 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 964 772 343 50 58 chr1 49723508 49723843 -147471589 + Lx8 LINE L1 6416 6760 -713 3 964 3909 133 28 5 chr1 49723843 49724484 -147470948 + Lx2 LINE L1 6335 6990 -7 3 964 772 343 50 58 chr1 49724484 49724770 -147470662 + Lx8 LINE L1 6761 7032 -441 3 964 973 353 46 15 chr1 49725235 49725824 -147469608 - Lx8 LINE L1 -167 7306 6700 3 964 24 32 0 0 chr1 49727060 49727091 -147468341 + AT_rich Low_complexity Low_complexity 1 31 0 3 964 2872 243 73 8 chr1 49727736 49728224 -147467208 - Lx2B LINE L1 -426 6574 6055 3 964 1031 97 14 0 chr1 49728224 49728368 -147467064 - B1_Mus2 SINE Alu 0 147 2 3 964 2872 243 73 8 chr1 49728368 49728643 -147466789 - Lx2B LINE L1 -946 6054 5761 3 964 2249 189 11 17 chr1 49728639 49729103 -147466329 - Lx2B LINE L1 -519 5358 4898 3 964 2247 180 82 23 chr1 49729094 49729667 -147465765 - MusHAL1 LINE L1 -1495 1217 611 3 964 252 0 0 0 chr1 49730042 49730070 -147465362 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 3 964 194 0 39 0 chr1 49730080 49730106 -147465326 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 964 412 338 14 14 chr1 49730108 49730255 -147465177 + MTE2a LTR MaLR 185 331 -48 3 964 293 117 17 0 chr1 49730312 49730372 -147465060 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 3 964 849 20 0 0 chr1 49731074 49731173 -147464259 + (TTC)n Simple_repeat Simple_repeat 3 101 0 3 964 636 14 0 0 chr1 49731173 49731246 -147464186 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 964 337 406 130 20 chr1 49731329 49731583 -147463849 - B4A SINE B4 -2 290 9 3 964 304 304 80 23 chr1 49731708 49731894 -147463538 - MLT1A1 LTR MaLR -12 396 183 3 964 22 56 0 0 chr1 49732832 49732868 -147462564 + AT_rich Low_complexity Low_complexity 1 36 0 3 964 26 88 0 0 chr1 49732902 49732970 -147462462 + AT_rich Low_complexity Low_complexity 1 68 0 3 964 21 0 0 0 chr1 49734984 49735005 -147460427 + AT_rich Low_complexity Low_complexity 1 21 0 3 964 1464 352 52 24 chr1 49735153 49736172 -147459260 - Lx9 LINE L1 -208 7436 6389 3 964 338 314 68 68 chr1 49736331 49736611 -147458821 - Lx9 LINE L1 -1596 6048 5769 3 964 8044 158 26 8 chr1 49736636 49738119 -147457313 - Lx2 LINE L1 -1 6996 5485 3 964 6096 114 8 13 chr1 49738138 49739156 -147456276 - L1M4c LINE L1 -3884 2500 1457 3 964 1030 122 0 0 chr1 49739156 49739304 -147456128 + B1_Mus1 SINE Alu 1 148 0 3 964 494 171 41 51 chr1 49739304 49739377 -147456055 - L1VL2 LINE L1 -5414 921 851 3 964 3951 160 19 16 chr1 49739383 49740133 -147455299 - L1VL2 LINE L1 -5353 982 231 3 964 1031 144 0 6 chr1 49740134 49740316 -147455116 - L1VL4 LINE L1 -773 2786 2606 3 964 5066 121 20 27 chr1 49740322 49741593 -147453839 - L1VL4 LINE L1 -1850 1709 442 3 964 621 239 0 0 chr1 49741602 49741715 -147453717 - L1VL4 LINE L1 -5801 501 389 3 964 390 42 0 0 chr1 49741929 49741977 -147453455 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 964 376 297 32 154 chr1 49742145 49742311 -147453121 + ORR1D2 LTR MaLR 1 146 -224 3 964 1086 68 37 12 chr1 49742311 49742474 -147452958 + L1Md_F2 LINE L1 6416 6582 0 3 964 376 297 32 154 chr1 49742474 49742554 -147452878 + ORR1D2 LTR MaLR 147 217 -153 3 964 209 176 0 0 chr1 49742606 49742640 -147452792 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 964 526 282 27 16 chr1 49742778 49742962 -147452470 + L1MC3 LINE L1 7376 7561 -224 3 964 23 33 0 0 chr1 49743438 49743468 -147451964 + AT_rich Low_complexity Low_complexity 1 30 0 3 964 487 270 27 11 chr1 49743578 49743765 -147451667 - Lx7 LINE L1 -1 7695 7506 3 964 1491 270 151 12 chr1 49743798 49744459 -147450973 - Lx7 LINE L1 -267 7429 6677 3 964 30 59 0 0 chr1 49744598 49744649 -147450783 + AT_rich Low_complexity Low_complexity 1 51 0 3 964 22 56 0 0 chr1 49744674 49744710 -147450722 + AT_rich Low_complexity Low_complexity 1 36 0 3 964 4583 173 9 36 chr1 49745325 49746164 -147449268 + Lx2 LINE L1 6179 6995 -2 3 964 7175 189 97 9 chr1 49746188 49747936 -147447496 - L1_Mur2 LINE L1 -1298 4579 2679 3 964 3173 202 27 1 chr1 49747935 49748594 -147446838 + L1_Mur2 LINE L1 5150 5825 -52 3 964 1795 249 42 4 chr1 49748591 49749141 -147446291 + Lx3C LINE L1 6398 6996 -4 3 964 30 27 0 0 chr1 49749453 49749490 -147445942 + AT_rich Low_complexity Low_complexity 1 37 0 3 964 198 0 0 0 chr1 49749543 49749565 -147445867 + (TTATA)n Simple_repeat Simple_repeat 3 24 0 3 964 329 267 0 125 chr1 49749962 49750082 -147445350 - PB1D10 SINE Alu -6 111 7 3 964 213 164 66 0 chr1 49750083 49750144 -147445288 + (TTAAA)n Simple_repeat Simple_repeat 4 68 0 3 964 301 297 9 9 chr1 49750383 49750495 -147444937 - Lx8 LINE L1 -564 6909 6798 3 964 5889 57 16 1 chr1 49750508 49751277 -147444155 - L1Md_F3 LINE L1 -14 6570 5791 3 964 23 33 0 0 chr1 49751458 49751488 -147443944 + AT_rich Low_complexity Low_complexity 1 30 0 3 964 30 27 0 0 chr1 49751606 49751643 -147443789 + AT_rich Low_complexity Low_complexity 1 37 0 3 964 309 226 0 0 chr1 49751805 49751889 -147443543 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 964 1062 366 65 52 chr1 49751915 49753049 -147442383 - Lx8 LINE L1 -155 7318 6170 3 964 246 316 0 0 chr1 49753049 49753090 -147442342 + polypyrimidine Low_complexity Low_complexity 55 95 0 3 964 986 99 0 6 chr1 49753090 49753262 -147442170 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 3 964 246 316 0 0 chr1 49753262 49753315 -147442117 + polypyrimidine Low_complexity Low_complexity 2 54 0 3 964 34 72 0 0 chr1 49754029 49754098 -147441334 + AT_rich Low_complexity Low_complexity 1 69 0 3 964 489 314 92 73 chr1 49754397 49754809 -147440623 + L1M4b LINE L1 1357 1776 -5558 3 964 444 168 16 8 chr1 49754879 49755005 -147440427 + GA-rich Low_complexity Low_complexity 2 128 0 3 964 439 378 53 40 chr1 49755206 49755432 -147440000 - RMER13B LTR ERVK -9 899 671 3 964 1831 242 25 176 chr1 49755418 49756331 -147439101 - RMER17B LTR ERVK -183 775 1 3 964 2209 210 70 88 chr1 49756337 49757010 -147438422 - RMER17A-int LTR ERVK -2 1726 1066 3 964 389 194 90 27 chr1 49757029 49757140 -147438292 - RMER17A-int LTR ERVK -623 1105 988 3 964 30163 137 39 24 chr1 49757300 49759021 -147436411 + L1Md_F2 LINE L1 217 1966 -3917 3 964 504 32 0 0 chr1 49759021 49759083 -147436349 + (GAAAA)n Simple_repeat Simple_repeat 3 64 0 3 964 30163 89 14 1 chr1 49759083 49762659 -147432773 + L1Md_F2 LINE L1 1967 5583 -300 3 964 7339 80 9 3 chr1 49762660 49763650 -147431782 + L1Md_F2 LINE L1 5587 6582 0 3 964 495 0 0 0 chr1 49764286 49764341 -147431091 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 964 228 286 0 94 chr1 49764512 49764597 -147430835 + RMER13B LTR ERVK 555 631 -277 3 964 12476 112 14 16 chr1 49764597 49765522 -147429910 + Lx3_Mus LINE L1 1683 2618 -3268 3 964 2728 117 40 7 chr1 49765522 49765945 -147429487 - RLTR9B LTR ERVK 0 437 1 3 964 12476 112 14 16 chr1 49765945 49767081 -147428351 + Lx3_Mus LINE L1 2619 3742 -2144 3 964 9646 106 7 8 chr1 49767075 49768184 -147427248 + Lx3_Mus LINE L1 4447 5556 -330 3 964 1227 104 49 0 chr1 49768184 49768367 -147427065 + B2_Mm1a SINE B2 1 192 -1 3 964 9646 111 26 11 chr1 49768367 49769795 -147425637 + Lx3_Mus LINE L1 5557 7001 -8 3 964 728 136 8 0 chr1 49769812 49769937 -147425495 + (GGGA)n Simple_repeat Simple_repeat 4 129 0 3 964 987 298 103 50 chr1 49769981 49770274 -147425158 - MTC LTR MaLR -4 417 90 3 964 4151 69 2 2 chr1 49770274 49770810 -147424622 - L1Md_F2 LINE L1 -10 6572 6037 3 964 987 298 103 50 chr1 49770810 49770912 -147424520 - MTC LTR MaLR -332 89 1 3 964 232 258 75 11 chr1 49770920 49771014 -147424418 + L1M2 LINE L1 4940 5039 -1104 3 964 4909 57 0 14 chr1 49771178 49771862 -147423570 + L1Md_F2 LINE L1 5932 6582 0 3 964 334 272 148 9 chr1 49771868 49771983 -147423449 + RMER5 LTR ERV1 14 144 -390 3 964 244 159 70 28 chr1 49771994 49772065 -147423367 + L1_Mur3 LINE L1 5221 5294 -586 3 964 25 31 0 0 chr1 49772074 49772106 -147423326 + AT_rich Low_complexity Low_complexity 1 32 0 3 964 215 227 0 0 chr1 49772228 49772272 -147423160 + (TATG)n Simple_repeat Simple_repeat 1 44 0 3 964 901 179 0 0 chr1 49772382 49772533 -147422899 + Lx7 LINE L1 6690 6840 -856 3 964 477 0 0 0 chr1 49772558 49772611 -147422821 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 964 333 224 27 27 chr1 49772623 49772733 -147422699 - Lx9 LINE L1 -184 7460 7351 3 964 566 251 186 16 chr1 49773034 49773228 -147422204 + MTD LTR MaLR 193 419 0 3 964 797 83 0 0 chr1 49773348 49773456 -147421976 + B1_Mus2 SINE Alu 40 147 0 3 964 198 0 0 0 chr1 49773456 49773478 -147421954 + (A)n Simple_repeat Simple_repeat 1 22 0 3 964 690 13 0 0 chr1 49773714 49773793 -147421639 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 964 7733 68 7 3 chr1 49776172 49777278 -147418154 - L1Md_F2 LINE L1 -6 6576 5468 3 964 32 0 0 0 chr1 49777433 49777465 -147417967 + AT_rich Low_complexity Low_complexity 1 32 0 3 964 574 80 57 0 chr1 49777483 49777571 -147417861 + Lx2A LINE L1 5785 5877 -1131 3 964 2308 181 14 0 chr1 49777562 49777992 -147417440 + Lx LINE L1 5179 5614 -269 3 964 2136 117 28 47 chr1 49777998 49778358 -147417074 - IAPEY2_LTR LTR ERVK -4 353 1 3 964 42798 87 8 5 chr1 49778358 49784152 -147411280 - IAPEy-int LTR ERVK 0 7513 1702 3 964 294 116 0 0 chr1 49784149 49784192 -147411240 - IAPEy-int LTR ERVK -7258 255 213 3 964 1726 160 0 11 chr1 49784200 49784484 -147410948 - IAPEy-int LTR ERVK -7232 281 1 3 964 2319 106 14 36 chr1 49784490 49784851 -147410581 - IAPEY2_LTR LTR ERVK -4 353 1 3 964 3393 100 29 4 chr1 49784851 49785362 -147410070 + Lx LINE L1 5609 6132 -522 3 964 490 198 12 0 chr1 49785363 49785449 -147409983 - RLTR26 LTR ERVK -555 87 1 3 964 844 299 121 19 chr1 49785498 49785910 -147409522 + Lx9 LINE L1 6474 6927 -717 3 964 819 311 12 4 chr1 49785936 49786178 -147409254 - Lx5 LINE L1 -221 6829 6586 3 964 483 286 14 0 chr1 49786182 49786322 -147409110 - Lx5 LINE L1 -627 6423 6282 3 964 1051 210 118 0 chr1 49786368 49786630 -147408802 - L1_Mur2 LINE L1 -1106 4771 4479 3 964 1669 210 54 28 chr1 49786621 49787081 -147408351 + L1_Mur3 LINE L1 2602 3073 -2807 3 964 5070 193 32 10 chr1 49787465 49788464 -147406968 + Lx4A LINE L1 6028 7048 -10 3 964 30 27 0 0 chr1 49788464 49788501 -147406931 + AT_rich Low_complexity Low_complexity 1 37 0 3 964 24 32 0 0 chr1 49788741 49788772 -147406660 + AT_rich Low_complexity Low_complexity 1 31 0 3 964 1486 164 51 26 chr1 49789220 49789532 -147405900 + Lx LINE L1 6335 6654 0 3 964 429 70 0 0 chr1 49789532 49789589 -147405843 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 964 22 35 0 0 chr1 49790184 49790213 -147405219 + AT_rich Low_complexity Low_complexity 1 29 0 3 964 22 0 0 0 chr1 49791222 49791244 -147404188 + AT_rich Low_complexity Low_complexity 1 22 0 4 964 413 277 67 26 chr1 49791286 49791479 -147403953 + L1_Rod LINE L1 5527 5727 -120 4 964 1055 81 23 0 chr1 49792468 49792641 -147402791 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 4 964 840 163 6 11 chr1 49792641 49792815 -147402617 + GA-rich Low_complexity Low_complexity 1 173 0 4 964 468 111 0 0 chr1 49793348 49793429 -147402003 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 964 248 317 85 0 chr1 49793446 49793528 -147401904 - B4A SINE B4 -18 274 186 4 964 6356 60 13 27 chr1 49795080 49795938 -147399494 + L1Md_F2 LINE L1 5725 6570 -12 4 964 25 51 0 0 chr1 49796106 49796145 -147399287 + AT_rich Low_complexity Low_complexity 1 39 0 4 964 605 370 87 16 chr1 49796476 49796797 -147398635 - ORR1D2 LTR MaLR 0 370 27 4 964 3080 187 172 43 chr1 49797977 49798822 -147396610 + RMER17B LTR ERVK 5 958 0 4 964 525 323 59 5 chr1 49799130 49799332 -147396100 + B3 SINE B2 4 216 0 4 964 1325 232 24 14 chr1 49799553 49799846 -147395586 + ORR1B2 LTR MaLR 5 300 -67 4 964 2865 141 29 25 chr1 49799856 49800430 -147395002 + Lx2 LINE L1 5587 6654 0 4 964 1438 256 86 67 chr1 49800452 49800916 -147394516 - RLTR19 LTR ERVK -12 487 15 4 964 254 122 0 0 chr1 49800965 49801006 -147394426 + ORR1B2 LTR MaLR 379 419 0 4 964 315 287 28 47 chr1 49801789 49801895 -147393537 + ID_B1 SINE B4 115 218 -6 4 964 373 335 43 16 chr1 49802067 49802255 -147393177 + Lx8 LINE L1 6197 6389 -1084 4 964 422 374 32 16 chr1 49802259 49802512 -147392920 + Lx8 LINE L1 7065 7321 -152 4 964 3458 18 5 0 chr1 49802690 49803084 -147392348 + MTA_Mm LTR MaLR 1 396 0 4 964 209 83 28 0 chr1 49804456 49804492 -147390940 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 964 246 182 67 11 chr1 49804526 49804615 -147390817 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 964 211 221 46 37 chr1 49804654 49804762 -147390670 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 4 964 1945 72 18 0 chr1 49804800 49805076 -147390356 - L1_Mus3 LINE L1 -3 6635 6355 4 964 5231 196 49 11 chr1 49805078 49806169 -147389263 - Lx2B LINE L1 -1 6999 5868 4 964 198 0 0 0 chr1 49806182 49806204 -147389228 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 964 1752 162 80 32 chr1 49806222 49806597 -147388835 - Lx LINE L1 0 6654 6262 4 120 1899 256 82 84 chr1 49806599 49807548 -147387884 + RMER17B LTR ERVK 87 905 -53 4 965 1071 272 21 32 chr1 49807567 49807905 -147387527 - L1_Rod LINE L1 -6537 635 302 4 965 3170 106 2 2 chr1 49808577 49809040 -147386392 + L1_Mus4 LINE L1 6166 6628 -8 4 965 22 35 0 0 chr1 49809040 49809069 -147386363 + AT_rich Low_complexity Low_complexity 1 29 0 4 965 1290 258 155 20 chr1 49809950 49810500 -147384932 + Lx9 LINE L1 6871 7493 -151 4 965 16229 193 34 30 chr1 49810573 49811090 -147384342 + Lx2 LINE L1 2017 2534 -3349 4 965 996 75 41 108 chr1 49811090 49811285 -147384147 - L1Md_F3 LINE L1 0 6584 6403 4 965 16229 193 34 30 chr1 49811285 49812406 -147383026 + Lx2 LINE L1 2535 3661 -2222 4 965 282 29 0 0 chr1 49812406 49812441 -147382991 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 965 16229 193 34 30 chr1 49812441 49813714 -147381718 + Lx2 LINE L1 3662 4863 -1020 4 965 5342 69 3 10 chr1 49813714 49814417 -147381015 - L1Md_F2 LINE L1 -17 6565 5868 4 965 16229 171 42 24 chr1 49814417 49816438 -147378994 + Lx2 LINE L1 4864 6989 -8 4 965 261 146 0 0 chr1 49816465 49816506 -147378926 + Lx4A LINE L1 5605 5645 -1413 4 965 269 261 0 0 chr1 49817038 49817103 -147378329 + Lx7 LINE L1 7188 7252 -444 4 965 351 256 247 19 chr1 49817106 49817377 -147378055 + Lx7 LINE L1 7356 7688 -8 4 965 186 174 28 28 chr1 49818070 49818141 -147377291 + GA-rich Low_complexity Low_complexity 3 73 0 4 965 1604 201 41 46 chr1 49818206 49818538 -147376894 + Lx3_Mus LINE L1 5410 5740 -140 4 965 810 0 0 0 chr1 49818538 49818628 -147376804 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 4 965 1604 164 79 40 chr1 49818628 49818885 -147376547 + Lx3_Mus LINE L1 5740 5864 -13 4 965 228 67 0 0 chr1 49818885 49818915 -147376517 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 4 965 2278 248 23 75 chr1 49818963 49819236 -147376196 + RMER6C LTR ERVK 1 268 -422 4 965 3250 22 147 21 chr1 49819236 49819658 -147375774 - IAPLTR2_Mm LTR ERVK 0 475 1 4 965 2278 248 23 75 chr1 49819658 49820112 -147375320 + RMER6C LTR ERVK 269 690 0 4 965 7371 190 55 69 chr1 49820112 49820397 -147375035 + RMER6-int LTR ERVK 1 307 -2870 4 965 1302 195 172 12 chr1 49820397 49820734 -147374698 - ORR1B1 LTR MaLR 0 394 4 4 965 7371 190 55 69 chr1 49820734 49821652 -147373780 + RMER6-int LTR ERVK 308 1171 -2006 4 965 183 42 0 0 chr1 49821652 49821676 -147373756 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 965 7371 190 55 69 chr1 49821676 49822236 -147373196 + RMER6-int LTR ERVK 1172 1741 -1436 4 965 266 136 0 0 chr1 49822234 49822278 -147373154 + RMER6-int LTR ERVK 2470 2513 -664 4 965 251 301 0 0 chr1 49822282 49822355 -147373077 + LSU-rRNA_Hsa rRNA rRNA 1777 1849 -3186 4 965 389 139 38 0 chr1 49822355 49822434 -147372998 + RMER6-int LTR ERVK 2591 2672 -505 4 965 873 231 60 111 chr1 49822482 49822968 -147372464 - RMER2 LTR ERV1 -27 540 13 4 965 961 200 5 10 chr1 49822968 49823160 -147372272 + RMER6-int LTR ERVK 2733 2923 -254 4 965 844 148 179 5 chr1 49823187 49823382 -147372050 + RMER6-int LTR ERVK 2919 3147 -30 4 965 343 113 47 9 chr1 49823387 49823494 -147371938 + T-rich Low_complexity Low_complexity 4 114 0 4 965 2092 223 104 25 chr1 49823518 49823966 -147371466 + RMER6C LTR ERVK 2 500 -190 4 965 225 0 0 0 chr1 49823966 49823991 -147371441 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 965 2092 223 104 25 chr1 49823991 49824177 -147371255 + RMER6C LTR ERVK 501 686 -4 4 965 312 256 127 8 chr1 49824196 49824314 -147371118 + Lx6 LINE L1 5879 6010 -1450 4 965 505 252 8 45 chr1 49824449 49824582 -147370850 + Lx6 LINE L1 6251 6378 -1082 4 965 5686 186 26 19 chr1 49824577 49825756 -147369676 - L1_Mur2 LINE L1 -674 5203 4016 4 965 2126 136 57 75 chr1 49825751 49826098 -147369334 - L1_Mm LINE L1 -4079 1804 1427 4 965 546 75 78 16 chr1 49826098 49826194 -147369238 + MT-int LTR MaLR 835 919 -179 4 965 2126 136 57 75 chr1 49826194 49826369 -147369063 - L1_Mm LINE L1 -4079 1426 1235 4 965 904 60 0 8 chr1 49826375 49826492 -147368940 - MTA_Mm LTR MaLR 0 396 281 4 965 6888 65 19 3 chr1 49826491 49827436 -147367996 - MTA_Mm-int LTR MaLR -138 960 1 4 965 2621 45 125 0 chr1 49827436 49827788 -147367644 - MTA_Mm LTR MaLR 0 396 1 4 965 1061 111 0 0 chr1 49827788 49827950 -147367482 - L1VL4 LINE L1 -5423 879 718 4 965 949 306 4 8 chr1 49827957 49828204 -147367228 - L1VL4 LINE L1 -5862 440 195 4 965 219 210 32 16 chr1 49828254 49828317 -147367115 + (TATG)n Simple_repeat Simple_repeat 1 64 0 4 965 999 99 7 0 chr1 49828601 49828742 -147366690 + B1_Mm SINE Alu 1 142 -5 4 965 204 67 0 0 chr1 49828750 49828780 -147366652 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 965 9331 108 4 8 chr1 49828780 49830952 -147364480 + L1_Mus1 LINE L1 4405 6567 0 4 965 291 294 74 0 chr1 49831064 49831227 -147364205 - L1MA9 LINE L1 -69 6243 6069 4 965 289 259 0 27 chr1 49831697 49831808 -147363624 - Lx9 LINE L1 -23 7621 7514 4 965 484 262 43 38 chr1 49831816 49832026 -147363406 - Lx7 LINE L1 -281 7415 7205 4 965 21 89 0 0 chr1 49832135 49832191 -147363241 + AT_rich Low_complexity Low_complexity 1 56 0 4 965 843 181 27 45 chr1 49833171 49833391 -147362041 + L1_Mur3 LINE L1 862 1077 -6651 4 965 2321 224 68 63 chr1 49833405 49834500 -147360932 + L1_Mur3 LINE L1 2259 3868 -2012 4 965 855 0 0 0 chr1 49834500 49834595 -147360837 + (GAA)n Simple_repeat Simple_repeat 3 97 0 4 965 2321 213 37 20 chr1 49834595 49834996 -147360436 + L1_Mur3 LINE L1 3869 4277 -1603 4 965 216 0 0 0 chr1 49834996 49835020 -147360412 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 965 2321 213 37 20 chr1 49835020 49835042 -147360390 + L1_Mur3 LINE L1 4278 4300 -1580 4 965 981 281 25 11 chr1 49835036 49835317 -147360115 + Lx6 LINE L1 7156 7440 -20 4 965 571 240 16 118 chr1 49835352 49835598 -147359834 - Lx6 LINE L1 -30 7430 7210 4 965 711 316 34 24 chr1 49835595 49835890 -147359542 - Lx5 LINE L1 -292 6758 6461 4 965 3132 96 101 3 chr1 49836117 49836686 -147358746 - L1_Mus3 LINE L1 -12 6624 5966 4 965 246 365 12 77 chr1 49836686 49836855 -147358577 - MER2 DNA MER2_type 0 345 188 4 965 369 0 0 0 chr1 49837368 49837409 -147358023 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 965 606 14 0 0 chr1 49837409 49837479 -147357953 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 965 22 35 0 0 chr1 49837564 49837593 -147357839 + AT_rich Low_complexity Low_complexity 1 29 0 4 965 268 261 21 21 chr1 49838032 49838126 -147357306 - ORR1E LTR MaLR -7 363 270 4 965 288 91 65 43 chr1 49838200 49838292 -147357140 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 4 965 501 344 15 46 chr1 49838321 49838516 -147356916 - ORR1E LTR MaLR -170 189 1 4 965 435 119 0 0 chr1 49838870 49838937 -147356495 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 965 1029 262 27 24 chr1 49839112 49839440 -147355992 + Lx8 LINE L1 6229 6557 -916 4 965 28 61 0 0 chr1 49839615 49839664 -147355768 + AT_rich Low_complexity Low_complexity 1 49 0 4 965 4084 94 7 9 chr1 49840587 49841223 -147354209 - L1_Mus3 LINE L1 -704 5934 5300 4 965 233 75 25 0 chr1 49841230 49841270 -147354162 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 965 1070 90 0 7 chr1 49841270 49841408 -147354024 - B1_Mm SINE Alu -8 139 2 4 965 4084 119 8 19 chr1 49841408 49841454 -147353978 - L1_Mus3 LINE L1 -584 5299 5259 4 965 21 0 0 0 chr1 49841964 49841985 -147353447 + AT_rich Low_complexity Low_complexity 1 21 0 4 965 243 365 0 71 chr1 49842346 49842458 -147352974 - B4A SINE B4 -73 219 116 4 965 244 365 84 58 chr1 49842864 49843018 -147352414 - RMER13A LTR ERVK -132 776 619 4 965 709 317 77 21 chr1 49843068 49843406 -147352026 - RMER13A LTR ERVK -406 454 98 4 965 24 67 0 0 chr1 49843504 49843549 -147351883 + AT_rich Low_complexity Low_complexity 1 45 0 4 965 430 208 0 0 chr1 49843770 49843847 -147351585 + RLTR23 LTR ERV1 8 84 -346 4 965 375 298 33 8 chr1 49844264 49844386 -147351046 + MTE2a LTR MaLR 251 375 -4 4 965 205 178 0 0 chr1 49844749 49844794 -147350638 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 965 417 39 0 0 chr1 49845994 49846045 -147349387 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 965 522 0 0 0 chr1 49846045 49846102 -147349330 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 965 13833 115 5 14 chr1 49846331 49849255 -147346177 - L1_Mus1 LINE L1 -1 6566 3664 4 965 24 53 0 0 chr1 49849305 49849343 -147346089 + AT_rich Low_complexity Low_complexity 1 38 0 4 965 1251 164 0 4 chr1 49849552 49849779 -147345653 - Lx2 LINE L1 0 6997 6772 4 965 22 56 0 0 chr1 49851431 49851467 -147343965 + AT_rich Low_complexity Low_complexity 1 36 0 4 965 421 340 43 19 chr1 49852828 49853038 -147342394 + B3 SINE B2 2 216 0 4 965 1092 56 0 0 chr1 49853206 49853349 -147342083 - L1Md_T LINE L1 -2 6580 6438 4 965 765 206 0 121 chr1 49853598 49853797 -147341635 + L1VL1 LINE L1 214 388 -6034 4 965 6791 105 4 0 chr1 49853811 49854861 -147340571 + L1_Mm LINE L1 1223 2276 -3607 4 965 2035 176 8 10 chr1 49855004 49855399 -147340033 - Lx2 LINE L1 0 6997 6604 4 965 3531 150 25 2 chr1 49855400 49855962 -147339470 + Lx2 LINE L1 6035 6609 -388 4 965 424 203 81 41 chr1 49857616 49857739 -147337693 + Lx7 LINE L1 5894 6021 -1675 4 965 261 307 14 106 chr1 49857740 49857882 -147337550 - RMER10B LTR ERVL -2 396 268 4 965 1185 292 42 35 chr1 49858122 49858573 -147336859 + Lx7 LINE L1 6017 6470 -1226 4 965 3353 232 50 78 chr1 49858588 49859255 -147336177 + Lx7 LINE L1 6656 7325 -371 4 965 189 0 0 0 chr1 49859255 49859276 -147336156 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 965 3353 232 50 78 chr1 49859276 49859679 -147335753 + Lx7 LINE L1 7326 7696 0 4 965 384 292 59 122 chr1 49860086 49860324 -147335108 + MLT1E2 LTR MaLR 3 225 -402 5 965 374 296 71 51 chr1 49860524 49860720 -147334712 + MLT1E2-int LTR MaLR 361 560 -811 5 965 556 331 0 0 chr1 49861367 49861503 -147333929 + B3 SINE B2 3 138 -78 5 965 630 109 0 0 chr1 49861503 49861613 -147333819 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 5 965 209 192 0 37 chr1 49861731 49861785 -147333647 + T-rich Low_complexity Low_complexity 6 57 0 5 965 325 263 79 20 chr1 49861826 49861927 -147333505 - B3A SINE B2 -86 112 6 5 965 1241 137 54 14 chr1 49862619 49862841 -147332591 - Lx2 LINE L1 0 6997 6767 5 965 265 152 0 0 chr1 49862841 49862887 -147332545 - Lx2 LINE L1 -360 6637 6592 5 965 14797 141 41 8 chr1 49862918 49865582 -147329850 - Lx3B LINE L1 -1 6972 4213 5 965 339 85 0 0 chr1 49865582 49865629 -147329803 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 965 14797 134 12 4 chr1 49865629 49866412 -147329020 - Lx3B LINE L1 -1674 4212 3420 5 965 333 109 0 0 chr1 49866772 49866827 -147328605 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 965 3601 231 88 17 chr1 49867402 49868386 -147327046 - Lx2B LINE L1 -3 7055 5948 5 965 2702 62 34 0 chr1 49868386 49868743 -147326689 - L1Md_F3 LINE L1 0 6584 6216 5 965 2811 236 133 148 chr1 49868743 49869195 -147326237 - Lx2B LINE L1 -1111 5947 5660 5 965 1664 124 39 14 chr1 49869197 49869483 -147325949 + L1_Mur1 LINE L1 4832 5124 -762 5 965 714 318 0 27 chr1 49869883 49870106 -147325326 - Lx6 LINE L1 -61 7399 7183 5 965 1676 216 28 1 chr1 49870104 49870572 -147324860 + Lx5 LINE L1 5527 6011 -1039 5 965 231 36 0 0 chr1 49870703 49870731 -147324701 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 965 561 133 0 0 chr1 49870731 49870829 -147324603 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 965 343 296 122 49 chr1 49871321 49871761 -147323671 + L1MA6 LINE L1 5799 6274 -26 5 965 235 192 0 27 chr1 49872919 49872994 -147322438 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 965 322 310 153 12 chr1 49873236 49873484 -147321948 + L1M4 LINE L1 4487 4769 -1377 5 965 1614 264 2 12 chr1 49873716 49874123 -147321309 - MTB_Mm LTR MaLR -2 405 3 5 965 2072 219 139 24 chr1 49874125 49874713 -147320719 - MTB_Mm-int LTR MaLR 0 1258 603 5 965 407 259 43 9 chr1 49874736 49874920 -147320512 - Lx7 LINE L1 -1051 6422 6234 5 965 646 96 19 0 chr1 49875166 49875270 -147320162 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 5 965 748 337 62 38 chr1 49875295 49875634 -147319798 + ORR1E LTR MaLR 1 347 -12 5 965 3059 304 34 26 chr1 49876031 49877274 -147318158 + MYSERV-int LTR ERVK 3809 5061 -1489 5 965 308 345 90 22 chr1 49877342 49877520 -147317912 + RMER4A LTR ERVK 246 435 -31 5 965 1582 229 41 97 chr1 49877657 49877738 -147317694 + RLTR20B1 LTR ERVK 5 76 -487 5 965 5308 44 6 5 chr1 49877738 49878401 -147317031 + L1Md_F3 LINE L1 5909 6572 -12 5 965 1582 229 41 97 chr1 49878401 49878783 -147316649 + RLTR20B1 LTR ERVK 77 442 -121 5 965 2051 175 48 8 chr1 49879049 49879424 -147316008 - L1_Mm LINE L1 -200 5683 5294 5 965 6336 133 24 18 chr1 49879420 49880432 -147315000 + Lx LINE L1 5620 6642 -12 5 965 243 0 0 0 chr1 49880432 49880459 -147314973 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 965 6336 133 24 18 chr1 49880459 49880474 -147314958 + Lx LINE L1 6643 6654 0 5 965 491 0 17 0 chr1 49880906 49880965 -147314467 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 5 965 9069 196 45 49 chr1 49881351 49882891 -147312541 + MYSERV16_I-int LTR ERVK 1 1499 -827 5 965 1809 56 60 0 chr1 49882891 49883142 -147312290 - L1Md_F3 LINE L1 -1 6583 6318 5 965 9069 196 45 49 chr1 49883142 49883936 -147311496 + MYSERV16_I-int LTR ERVK 1500 2326 0 5 965 1601 235 135 56 chr1 49883936 49883958 -147311474 + RLTR20B2 LTR ERVK 1 22 -538 5 965 2319 114 3 80 chr1 49883958 49884347 -147311085 + RLTR10D LTR ERVK 1 359 0 5 965 1601 235 135 56 chr1 49884347 49884749 -147310683 + RLTR20B2 LTR ERVK 23 465 -95 5 965 459 52 0 0 chr1 49884749 49884807 -147310625 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 965 1601 235 135 56 chr1 49884807 49884900 -147310532 + RLTR20B2 LTR ERVK 466 559 -1 5 965 288 0 0 0 chr1 49884930 49884962 -147310470 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 965 4705 189 32 27 chr1 49884968 49885994 -147309438 + MYSERV6-int LTR ERVK 7926 8956 -3 5 965 462 308 35 44 chr1 49885998 49886314 -147309118 + RLTR15 LTR ERVK 1 313 -46 5 965 1925 99 26 56 chr1 49886507 49886848 -147308584 + IAPEY_LTR LTR ERVK 55 385 0 5 965 1973 169 57 31 chr1 49886848 49887269 -147308163 + IAPEy-int LTR ERVK 1 432 -7081 5 965 941 153 42 24 chr1 49887697 49888085 -147307347 + IAPEy-int LTR ERVK 409 952 -6629 5 965 1687 169 99 39 chr1 49888197 49888580 -147306852 + RMER16-int LTR ERVK 251 656 -4750 5 965 399 248 88 9 chr1 49888684 49888798 -147306634 + RMER16-int LTR ERVK 938 1060 -5077 5 965 301 267 0 55 chr1 49888811 49888902 -147306530 + IAPEy-int LTR ERVK 2454 2539 -4867 5 965 679 185 0 0 chr1 49888914 49889033 -147306399 + IAPEy-int LTR ERVK 2635 2753 -4653 5 965 437 71 0 0 chr1 49889059 49889115 -147306317 + IAPEy-int LTR ERVK 3567 3622 -3784 5 965 592 61 47 66 chr1 49889114 49889220 -147306212 + IAPEy-int LTR ERVK 4567 4670 -2911 5 965 3266 96 0 16 chr1 49889476 49889923 -147305509 + IAPEy-int LTR ERVK 5203 5642 -1939 5 965 3337 87 9 7 chr1 49889914 49890367 -147305065 + IAPEy-int LTR ERVK 5761 6214 -1367 5 965 5325 111 3 8 chr1 49890357 49891140 -147304292 + IAPEy-int LTR ERVK 6735 7513 0 5 965 2312 121 23 3 chr1 49891140 49891487 -147303945 + IAPEY2_LTR LTR ERVK 1 354 -3 5 965 1004 103 0 7 chr1 49891775 49891922 -147303510 - B1_Mus2 SINE Alu -1 146 1 5 965 26 30 0 0 chr1 49892142 49892175 -147303257 + AT_rich Low_complexity Low_complexity 1 33 0 5 965 1512 182 117 19 chr1 49892961 49893320 -147302112 - RLTR17 LTR ERVK -298 394 1 5 965 363 105 0 0 chr1 49894122 49894179 -147301253 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 965 693 352 115 0 chr1 49894933 49895220 -147300212 + MTE2b LTR MaLR 58 377 -2 5 965 342 0 0 0 chr1 49895375 49895413 -147300019 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 965 1525 58 20 5 chr1 49895639 49895852 -147299580 - Lx2 LINE L1 -567 6015 5800 5 965 808 194 57 0 chr1 49895827 49896002 -147299430 - Lx2 LINE L1 -48 6949 6765 5 965 2603 141 31 0 chr1 49895991 49896410 -147299022 - Lx2 LINE L1 -352 6645 6214 5 965 353 303 32 13 chr1 49896556 49896713 -147298719 - L1MD2 LINE L1 -375 5984 5825 5 965 408 349 63 74 chr1 49896798 49897228 -147298204 - L1MD2 LINE L1 -648 5711 5287 5 965 528 318 7 13 chr1 49897758 49897911 -147297521 - Lx8 LINE L1 -208 7265 7114 5 965 567 206 38 15 chr1 49898525 49898658 -147296774 - RMER1C Other Other -131 1211 1076 5 965 1083 110 7 0 chr1 49899929 49900074 -147295358 + B1_Mus2 SINE Alu 1 146 -1 5 965 326 55 55 0 chr1 49900075 49900130 -147295302 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5 965 1011 296 52 44 chr1 49900590 49900957 -147294475 - ORR1D1 LTR MaLR -2 372 3 5 965 49 18 0 0 chr1 49901016 49901072 -147294360 + AT_rich Low_complexity Low_complexity 1 56 0 5 965 605 343 38 50 chr1 49901104 49901500 -147293932 - Lx9 LINE L1 -194 7450 7060 5 965 1849 131 75 16 chr1 49901500 49901819 -147293613 - IAPEY2_LTR LTR ERVK 0 357 20 5 965 16181 204 107 26 chr1 49902164 49903695 -147291737 + Lx2B LINE L1 365 1969 -3917 5 965 213 39 0 0 chr1 49903695 49903721 -147291711 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 965 16181 204 116 18 chr1 49903721 49903801 -147291631 + Lx2B LINE L1 1970 2123 -3763 5 965 228 260 0 20 chr1 49903801 49903852 -147291580 + RMER15 LTR ERVL 293 342 -233 5 965 16181 204 116 18 chr1 49903852 49904201 -147291231 + Lx2B LINE L1 2124 2804 -3082 5 965 214 50 50 0 chr1 49904201 49904241 -147291191 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 5 965 16181 200 99 17 chr1 49904241 49907663 -147287769 + Lx2B LINE L1 2805 6263 -737 5 965 6745 93 59 3 chr1 49907663 49908641 -147286791 - RLTR13D4 LTR ERVK 0 1033 1 5 965 6927 186 31 14 chr1 49908641 49909362 -147286070 + Lx2B LINE L1 6264 7000 0 5 965 30 27 0 0 chr1 49909392 49909429 -147286003 + AT_rich Low_complexity Low_complexity 1 37 0 5 965 29 0 0 0 chr1 49909554 49909583 -147285849 + AT_rich Low_complexity Low_complexity 1 29 0 5 965 11249 175 20 20 chr1 49909638 49911888 -147283544 + L1_Mur2 LINE L1 2857 5108 -769 5 965 2284 140 39 17 chr1 49911888 49912295 -147283137 + Lx LINE L1 6232 6647 -7 5 965 1224 297 58 22 chr1 49912849 49913297 -147282135 + Lx6 LINE L1 6995 7458 -2 5 965 259 329 13 0 chr1 49913364 49913440 -147281992 + PB1D10 SINE Alu 31 107 -10 5 965 33 80 0 0 chr1 49913441 49913516 -147281916 + AT_rich Low_complexity Low_complexity 1 75 0 5 965 809 236 134 0 chr1 49913517 49913733 -147281699 - Lx5 LINE L1 -2 7048 6804 5 965 2532 225 30 12 chr1 49913727 49914298 -147281134 - Lx5 LINE L1 -537 6513 5933 5 965 1135 152 48 52 chr1 49914290 49914561 -147280871 - L1_Mur2 LINE L1 -2311 3566 3297 5 965 499 336 50 90 chr1 49914565 49915003 -147280429 + RMER13A LTR ERVK 4 478 -149 5 965 5414 185 24 9 chr1 49915278 49916434 -147278998 - L1_Mur2 LINE L1 -2564 3313 2140 5 965 23782 69 5 0 chr1 49916426 49920300 -147275132 - L1Md_F2 LINE L1 0 6582 2689 5 965 34 24 0 0 chr1 49920866 49920907 -147274525 + AT_rich Low_complexity Low_complexity 1 41 0 5 965 634 246 190 17 chr1 49921106 49921264 -147274168 + Lx9 LINE L1 7303 7464 -180 5 965 462 128 0 0 chr1 49921264 49921358 -147274074 + (CATA)n Simple_repeat Simple_repeat 2 95 0 5 965 634 246 190 17 chr1 49921358 49921488 -147273944 + Lx9 LINE L1 7465 7641 -3 5 965 1520 240 39 26 chr1 49921708 49922010 -147273422 - MTD LTR MaLR -12 407 117 5 965 258 32 0 0 chr1 49922010 49922041 -147273391 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 965 1520 255 25 29 chr1 49922041 49922153 -147273279 - MTD LTR MaLR -303 116 2 5 965 642 296 20 4 chr1 49922432 49922720 -147272712 + L1_Rod LINE L1 3726 4018 -1829 5 965 246 286 0 0 chr1 49922721 49922791 -147272641 - L1M2 LINE L1 -1288 4855 4786 5 965 1278 79 17 12 chr1 49922794 49923139 -147272293 + (TTTC)n Simple_repeat Simple_repeat 1 346 0 5 965 404 269 0 1 chr1 49923148 49923264 -147272168 - L1_Mur3 LINE L1 -1159 4718 4604 5 965 451 301 15 7 chr1 49923266 49923403 -147272029 - Lx6 LINE L1 -716 6744 6607 5 965 22 0 0 0 chr1 49923605 49923627 -147271805 + AT_rich Low_complexity Low_complexity 1 22 0 5 965 6594 112 33 13 chr1 49923648 49924651 -147270781 + RLTR13D5 LTR ERVK 1 1023 0 5 965 301 177 0 112 chr1 49924665 49924754 -147270678 - L1_Mur3 LINE L1 -1287 4590 4512 5 965 242 179 0 35 chr1 49924760 49924818 -147270614 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 5 965 238 250 16 0 chr1 49924826 49924890 -147270542 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 965 1003 365 25 38 chr1 49924898 49925618 -147269814 + Lx9 LINE L1 6203 7049 -595 5 965 332 232 10 0 chr1 49925668 49925767 -147269665 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 965 255 259 58 58 chr1 49925767 49925923 -147269509 + RLTR22_Mur LTR ERVK 1307 1462 -386 5 965 753 282 35 41 chr1 49925972 49926316 -147269116 + RLTR15 LTR ERVK 1 342 -17 5 965 414 361 16 20 chr1 49926400 49926646 -147268786 + Lx9 LINE L1 7197 7441 -203 5 965 252 111 0 0 chr1 49926656 49926701 -147268731 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 965 440 323 120 44 chr1 49927768 49928202 -147267230 - L1MB7 LINE L1 -236 5948 5482 5 965 356 327 0 49 chr1 49928307 49928471 -147266961 - L1MB7 LINE L1 -1184 4962 4807 5 965 21 0 0 0 chr1 49928645 49928666 -147266766 + AT_rich Low_complexity Low_complexity 1 21 0 5 965 505 191 12 7 chr1 49928666 49928794 -147266638 - L1_Mur2 LINE L1 -826 5320 5137 5 965 3230 46 5 0 chr1 49928796 49929190 -147266242 + MTA_Mm LTR MaLR 1 396 0 5 965 2714 93 0 10 chr1 49929190 49929579 -147265853 + MTA_Mm-int LTR MaLR 1 385 -713 5 965 243 0 0 0 chr1 49929910 49929937 -147265495 + (A)n Simple_repeat Simple_repeat 1 27 0 5 965 4372 88 40 74 chr1 49929938 49930685 -147264747 + MTA_Mm-int LTR MaLR 377 1098 0 5 965 3106 68 5 0 chr1 49930685 49931079 -147264353 + MTA_Mm LTR MaLR 1 396 0 5 965 1641 192 3 0 chr1 49931079 49931396 -147264036 - L1_Mur2 LINE L1 -718 5159 4842 5 965 3141 176 9 22 chr1 49931398 49932076 -147263356 + L1_Mur2 LINE L1 4180 4848 -1029 5 965 283 299 43 43 chr1 49932080 49932241 -147263191 - Lx7 LINE L1 -9 7687 7527 5 965 596 215 0 0 chr1 49932241 49932348 -147263084 - Lx2B LINE L1 -481 6519 6413 5 965 2383 193 37 9 chr1 49932355 49932815 -147262617 + Lx2B LINE L1 6524 6996 -4 5 965 615 300 66 50 chr1 49932885 49933066 -147262366 - Lx7 LINE L1 -221 7475 7295 5 965 351 0 0 0 chr1 49933066 49933105 -147262327 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 965 615 300 66 50 chr1 49933105 49933242 -147262190 - Lx7 LINE L1 -402 7294 7153 5 965 941 257 42 69 chr1 49933408 49933529 -147261903 - Lx7 LINE L1 -284 7412 7299 6 965 288 53 0 0 chr1 49933529 49933567 -147261865 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 6 965 941 257 42 69 chr1 49933567 49933805 -147261627 - Lx7 LINE L1 -398 7298 7063 6 965 473 264 19 9 chr1 49933816 49933923 -147261509 - RLTR14 LTR ERV1 -2 380 273 6 965 1274 275 35 0 chr1 49933958 49934304 -147261128 - Lx7 LINE L1 -649 7047 6690 6 965 319 316 91 10 chr1 49934314 49934522 -147260910 - L1M2 LINE L1 -726 5574 5350 6 965 36 94 0 0 chr1 49934719 49934825 -147260607 + AT_rich Low_complexity Low_complexity 1 106 0 6 965 1117 43 0 0 chr1 49934829 49934968 -147260464 + B1_Mus1 SINE Alu 10 148 0 6 965 666 240 7 7 chr1 49935225 49935372 -147260060 - MTC LTR MaLR -8 413 267 6 965 336 373 18 0 chr1 49935413 49935523 -147259909 + B4 SINE B4 177 288 -4 6 965 602 37 12 0 chr1 49935589 49935670 -147259762 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 965 348 200 41 0 chr1 49935882 49936027 -147259405 + (TA)n Simple_repeat Simple_repeat 1 151 0 6 965 2382 101 83 18 chr1 49936027 49936411 -147259021 + RLTR9E LTR ERVK 1 409 0 6 965 1246 211 51 53 chr1 49936427 49936782 -147258650 + ETnERV2-int LTR ERVK 16 369 -2945 6 120 5437 186 44 47 chr1 49936811 49938793 -147256639 + ETnERV2-int LTR ERVK 320 3448 -3958 6 966 15769 107 30 5 chr1 49939033 49939503 -147255929 + ETnERV2-int LTR ERVK 3441 3912 -3494 6 966 885 45 0 0 chr1 49939503 49939613 -147255819 + (TA)n Simple_repeat Simple_repeat 1 110 0 6 966 15769 107 30 5 chr1 49939613 49941406 -147254026 + ETnERV2-int LTR ERVK 3913 5761 -1645 6 966 1369 184 178 33 chr1 49941400 49941862 -147253570 + RMER16-int LTR ERVK 3093 3402 -2004 6 966 3250 147 8 23 chr1 49941861 49942554 -147252878 + ETnERV2-int LTR ERVK 5786 6227 -1179 6 966 482 93 0 26 chr1 49942768 49942845 -147252587 + ETnERV2-int LTR ERVK 7331 7405 -1 6 966 2613 107 17 19 chr1 49942847 49943257 -147252175 + RLTR9E LTR ERVK 1 409 0 6 966 1621 66 0 0 chr1 49943966 49944179 -147251253 + L1Md_T LINE L1 6370 6582 0 6 966 578 82 0 10 chr1 49944903 49945002 -147250430 + (GTTTG)n Simple_repeat Simple_repeat 3 100 0 6 966 558 43 0 0 chr1 49945182 49945251 -147250181 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 966 249 257 27 54 chr1 49945378 49945452 -147249980 - RSINE1 SINE B4 -10 155 84 6 966 1532 200 55 11 chr1 49945851 49946333 -147249099 - BGLII_B LTR ERVK -6 439 37 6 966 2121 180 63 36 chr1 49946333 49946776 -147248656 + RLTR26 LTR ERVK 1 455 -187 6 966 693 188 0 0 chr1 49946792 49946904 -147248528 + RLTR26 LTR ERVK 531 642 0 6 966 909 366 21 28 chr1 49947270 49947692 -147247740 - Lx5 LINE L1 -148 6902 6484 6 966 895 269 68 12 chr1 49947714 49948091 -147247341 - Lx5 LINE L1 -687 6363 5947 6 966 21 0 0 0 chr1 49949126 49949147 -147246285 + AT_rich Low_complexity Low_complexity 1 21 0 6 966 25 0 0 0 chr1 49949550 49949575 -147245857 + AT_rich Low_complexity Low_complexity 1 25 0 6 966 214 50 0 48 chr1 49950081 49950123 -147245309 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 966 364 325 17 8 chr1 49951065 49951183 -147244249 + RSINE1 SINE B4 6 124 -41 6 966 24 32 0 0 chr1 49951209 49951240 -147244192 + AT_rich Low_complexity Low_complexity 1 31 0 6 966 252 371 0 0 chr1 49951250 49951320 -147244112 + PB1D9 SINE Alu 1 70 -50 6 966 6584 146 24 4 chr1 49951325 49952682 -147242750 + Lx3B LINE L1 5270 6652 -321 6 966 3152 169 8 13 chr1 49952683 49953300 -147242132 + L1_Mur2 LINE L1 2468 3081 -2796 6 966 602 58 11 0 chr1 49953303 49953390 -147242042 + (GAA)n Simple_repeat Simple_repeat 1 88 0 6 966 27426 127 55 32 chr1 49953394 49955017 -147240415 + L1Md_F2 LINE L1 138 1976 -3907 6 966 219 69 0 0 chr1 49955017 49955046 -147240386 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 966 27426 88 43 51 chr1 49955046 49958867 -147236565 + L1Md_F2 LINE L1 1977 5585 -298 6 966 6626 104 20 23 chr1 49958867 49959866 -147235566 + L1Md_F2 LINE L1 5587 6582 0 6 966 227 264 66 52 chr1 49960036 49960172 -147235260 + Lx8 LINE L1 7252 7389 -84 6 966 447 255 20 52 chr1 49960742 49960895 -147234537 + RLTR43A LTR ERVK 216 363 -1 6 966 1951 279 87 24 chr1 49961046 49961681 -147233751 + Lx6 LINE L1 6786 7460 0 6 966 252 0 0 0 chr1 49961959 49961987 -147233445 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 6 966 23 68 0 0 chr1 49962357 49962401 -147233031 + AT_rich Low_complexity Low_complexity 1 44 0 6 966 643 251 108 25 chr1 49963154 49963326 -147232106 + Lx7 LINE L1 7356 7545 -151 6 966 702 113 0 0 chr1 49963326 49963432 -147232000 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 966 643 251 108 25 chr1 49963432 49963574 -147231858 + Lx7 LINE L1 7546 7696 0 6 966 8538 205 111 19 chr1 49964005 49966894 -147228538 - Lx5 LINE L1 -444 6606 3435 6 966 1067 193 9 0 chr1 49966896 49967119 -147228313 - Lx5 LINE L1 -3122 2755 2531 6 966 822 257 67 8 chr1 49967129 49967368 -147228064 - RLTR12B LTR ERVK -23 505 253 6 966 782 178 0 0 chr1 49967368 49967514 -147227918 - Lx5 LINE L1 -6022 1064 919 6 966 281 270 0 0 chr1 49968873 49968936 -147226496 - ORR1B2 LTR MaLR -304 63 1 6 966 28 29 0 0 chr1 49968999 49969034 -147226398 + AT_rich Low_complexity Low_complexity 1 35 0 6 966 494 243 69 41 chr1 49969037 49969404 -147226028 - Lx9 LINE L1 -7 7637 7145 6 966 1410 257 70 81 chr1 49969407 49969517 -147225915 - RLTR11A2 LTR ERVK 0 527 418 6 966 581 126 36 9 chr1 49969517 49969629 -147225803 + Lx3A LINE L1 6858 6972 -9 6 966 1410 257 70 81 chr1 49969629 49970048 -147225384 - RLTR11A2 LTR ERVK -110 417 4 6 966 1021 90 7 7 chr1 49970082 49970228 -147225204 - B1_Mm SINE Alu -1 146 1 6 966 706 235 66 39 chr1 49970236 49970413 -147225019 - L1_Rod LINE L1 -890 4957 4788 6 966 2276 114 14 36 chr1 49970413 49970778 -147224654 + IAPEY2_LTR LTR ERVK 1 357 0 6 966 706 235 66 39 chr1 49970778 49970857 -147224575 - L1_Rod LINE L1 -1060 4787 4695 6 966 1229 248 117 54 chr1 49970857 49971249 -147224183 + MTC LTR MaLR 1 417 -4 6 966 967 253 52 45 chr1 49971250 49971672 -147223760 - L1_Rod LINE L1 -1146 4701 4277 6 966 444 67 0 0 chr1 49971674 49971734 -147223698 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 966 2492 224 48 7 chr1 49971734 49972313 -147223119 - MERVL_2A-int LTR ERVL -71 5690 5088 6 966 1124 257 114 37 chr1 49972313 49972596 -147222836 - ORR1C1 LTR MaLR 0 378 65 6 966 1532 42 0 26 chr1 49972596 49972790 -147222642 - B2_Mm1t SINE B2 -4 189 1 6 966 1124 257 114 37 chr1 49972790 49972857 -147222575 - ORR1C1 LTR MaLR -314 64 2 6 966 3665 263 69 27 chr1 49972857 49974172 -147221260 - ORR1C1-int LTR MaLR 0 1370 1 6 966 772 211 273 14 chr1 49974177 49974466 -147220966 - ORR1C1 LTR MaLR -14 364 1 6 966 345 253 0 0 chr1 49974795 49974874 -147220558 - L1_Rod LINE L1 -1882 3965 3887 6 966 240 179 0 0 chr1 49974897 49974948 -147220484 - L1_Rod LINE L1 -2327 3819 3769 6 966 1505 267 159 76 chr1 49975018 49976619 -147218813 - L1_Rod LINE L1 -3037 3106 1376 6 966 444 282 8 61 chr1 49977224 49977356 -147218076 - RSINE1 SINE B4 -21 144 20 6 966 1828 236 77 29 chr1 49977402 49977883 -147217549 - RLTR11A2 LTR ERVK -20 507 4 6 966 337 103 29 0 chr1 49978039 49978107 -147217325 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 966 23 54 0 0 chr1 49978987 49979024 -147216408 + AT_rich Low_complexity Low_complexity 1 37 0 6 966 315 0 0 0 chr1 49979123 49979158 -147216274 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 966 315 0 0 0 chr1 49979158 49979192 -147216240 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 966 186 43 0 0 chr1 49979192 49979214 -147216218 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 966 629 239 0 7 chr1 49979524 49979659 -147215773 - Lx6 LINE L1 -721 6739 6606 6 966 979 201 295 62 chr1 49979668 49980031 -147215401 + RLTR20C LTR ERVK 1 444 -107 6 966 468 51 0 0 chr1 49980031 49980090 -147215342 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 966 539 256 95 13 chr1 49980090 49980184 -147215248 + RLTR20C LTR ERVK 445 549 -2 6 966 945 252 5 5 chr1 49980184 49980403 -147215029 - Lx6 LINE L1 -853 6607 6389 6 966 2053 44 0 4 chr1 49980416 49980690 -147214742 + MTA_Mm-int LTR MaLR 826 1098 0 6 966 3147 42 26 0 chr1 49980690 49981076 -147214356 + MTA_Mm LTR MaLR 1 396 0 6 966 420 37 0 0 chr1 49981845 49981899 -147213533 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 6 966 10950 182 35 11 chr1 49981899 49983965 -147211467 - Lx2B LINE L1 -31 6969 4860 6 966 2564 30 0 0 chr1 49983965 49984267 -147211165 + L1Md_A LINE L1 6280 6581 -1 6 966 10950 185 41 20 chr1 49984267 49984327 -147211105 - Lx2B LINE L1 -1018 4859 4798 6 966 378 0 0 0 chr1 49984327 49984369 -147211063 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 966 10950 185 41 20 chr1 49984369 49985675 -147209757 - Lx2B LINE L1 -1080 4797 3449 6 966 2443 153 64 8 chr1 49985672 49986141 -147209291 - MusHAL1 LINE L1 -978 1734 1240 6 966 629 277 25 25 chr1 49986260 49986419 -147209013 - RMER15 LTR ERVL -416 159 1 6 966 301 333 56 30 chr1 49986558 49986756 -147208676 + L1M5 LINE L1 3846 4048 -2098 6 966 1013 282 34 8 chr1 49987239 49987507 -147207925 - RMER15 LTR ERVL -97 478 204 6 966 732 133 0 43 chr1 49987507 49987648 -147207784 - L1Md_F2 LINE L1 0 6582 6448 6 966 705 261 22 48 chr1 49987669 49987898 -147207534 - RMER15 LTR ERVL -324 251 29 6 966 407 337 26 0 chr1 49988048 49988241 -147207191 + Lx9 LINE L1 7267 7464 -180 6 966 382 351 36 69 chr1 49988451 49988754 -147206678 + L1MC LINE L1 4550 4842 -1304 6 966 1214 231 71 106 chr1 49988911 49989347 -147206085 - RMER16 LTR ERVK 0 533 113 6 966 23 0 0 0 chr1 49989415 49989438 -147205994 + AT_rich Low_complexity Low_complexity 1 23 0 6 966 207 0 0 0 chr1 49989513 49989536 -147205896 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 966 1089 174 10 5 chr1 49989536 49989738 -147205694 - Lx2 LINE L1 -26 6971 6769 6 966 5923 153 34 21 chr1 49989731 49989970 -147205462 - Lx2 LINE L1 -352 6645 6404 6 966 396 0 0 0 chr1 49989970 49990014 -147205418 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 966 5923 153 34 21 chr1 49990014 49990818 -147204614 - Lx2 LINE L1 -594 6403 5589 6 966 821 185 0 0 chr1 49990809 49990955 -147204477 - L1VL4 LINE L1 -6137 165 20 6 966 1057 103 7 0 chr1 49991136 49991282 -147204150 + B1_Mm SINE Alu 1 147 0 6 966 17778 188 116 20 chr1 49991480 49996251 -147199181 + L1Md_F2 LINE L1 359 5580 -297 6 966 7608 65 8 3 chr1 49996251 49997241 -147198191 + L1Md_F2 LINE L1 5587 6581 -1 6 966 1083 249 48 84 chr1 49997562 49997956 -147197476 - RMER20B LTR ERVK -25 602 223 6 966 350 259 12 12 chr1 49997961 49998047 -147197385 - RMER20B LTR ERVK -527 100 15 6 966 403 278 58 106 chr1 49998766 49999040 -147196392 + L1MC4a LINE L1 6213 6473 -1409 6 966 204 150 0 24 chr1 49999508 49999549 -147195883 + A-rich Low_complexity Low_complexity 3 42 0 6 966 284 263 73 0 chr1 49999549 49999655 -147195777 - MTD LTR MaLR -71 348 216 6 966 230 437 8 0 chr1 50000596 50000715 -147194717 + MIR3 SINE MIR 78 197 -11 1 966 3148 17 0 0 chr1 50000960 50001321 -147194111 - L1Md_A LINE L1 -1 6581 6221 2 966 852 145 0 0 chr1 50001323 50001468 -147193964 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 3 966 27 73 0 0 chr1 50001595 50001650 -147193782 + AT_rich Low_complexity Low_complexity 1 55 0 4 966 233 109 22 0 chr1 50002116 50002162 -147193270 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 966 441 0 0 0 chr1 50002299 50002348 -147193084 + (TTA)n Simple_repeat Simple_repeat 1 49 0 6 966 276 30 0 0 chr1 50002881 50002914 -147192518 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 966 369 251 24 26 chr1 50002934 50003127 -147192305 - L1_Mm LINE L1 -769 5531 5332 8 966 277 180 64 53 chr1 50003170 50003264 -147192168 - Lx9 LINE L1 -1 7643 7549 9 966 210 91 0 0 chr1 50003293 50003326 -147192106 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 966 1225 269 91 25 chr1 50003331 50003804 -147191628 - Lx9 LINE L1 -179 7465 6962 9 966 378 0 0 0 chr1 50003804 50003846 -147191586 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 966 972 236 27 9 chr1 50003852 50004074 -147191358 + Lx4B LINE L1 6492 6717 -341 1 966 3717 44 0 0 chr1 50004073 50004523 -147190909 - L1Md_F2 LINE L1 -482 6100 5651 1 966 3526 63 0 9 chr1 50004524 50004985 -147190447 + L1Md_F2 LINE L1 6114 6570 -12 1 966 574 248 15 0 chr1 50004989 50005122 -147190310 + Lx2B LINE L1 6702 6836 -164 1 966 23 92 0 0 chr1 50005207 50005272 -147190160 + AT_rich Low_complexity Low_complexity 1 65 0 1 966 383 106 15 0 chr1 50006397 50006463 -147188969 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 966 228 35 0 0 chr1 50006633 50006662 -147188770 + (A)n Simple_repeat Simple_repeat 1 29 0 1 966 2346 149 2 20 chr1 50006759 50007205 -147188227 + MusHAL1 LINE L1 240 677 -2035 1 966 5206 51 23 39 chr1 50007205 50007901 -147187531 + L1Md_F2 LINE L1 5896 6580 -2 1 966 5382 195 44 3 chr1 50007901 50008384 -147187048 + Lx LINE L1 4737 5236 -647 2 966 396 0 0 0 chr1 50008384 50008428 -147187004 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 966 6048 178 25 2 chr1 50008428 50009810 -147185622 + Lx LINE L1 5237 6654 0 2 966 353 261 86 71 chr1 50009872 50010140 -147185292 + Lx9 LINE L1 7339 7610 -34 2 966 1939 175 2 86 chr1 50010214 50010657 -147184775 + L1_Mm LINE L1 5309 5714 -169 2 966 336 385 161 25 chr1 50010782 50011222 -147184210 + L1M4b LINE L1 557 1056 -6278 2 966 341 258 164 15 chr1 50011684 50011818 -147183614 + L1M4b LINE L1 1628 1781 -5553 2 966 328 324 50 55 chr1 50011896 50012134 -147183298 + L1M4b LINE L1 5263 5499 -1507 2 966 468 0 0 0 chr1 50012141 50012193 -147183239 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 966 777 174 0 0 chr1 50012200 50012361 -147183071 + GA-rich Low_complexity Low_complexity 4 164 0 2 966 498 46 0 0 chr1 50012632 50012697 -147182735 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 966 327 25 0 0 chr1 50013003 50013043 -147182389 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 2 966 26 74 0 0 chr1 50014527 50014581 -147180851 + AT_rich Low_complexity Low_complexity 1 54 0 2 966 5041 118 24 6 chr1 50014663 50015449 -147179983 + Lx3_Mus LINE L1 6202 7001 -8 3 966 240 35 0 0 chr1 50016154 50016183 -147179249 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 966 25 51 0 0 chr1 50016366 50016405 -147179027 + AT_rich Low_complexity Low_complexity 1 39 0 3 966 1049 132 40 6 chr1 50016845 50017020 -147178412 + B2_Mm2 SINE B2 1 181 -14 3 966 1703 259 57 103 chr1 50017328 50017596 -147177836 + Lx9 LINE L1 6670 6914 -730 3 966 1099 69 14 0 chr1 50017596 50017741 -147177691 - B1_Mus2 SINE Alu 0 147 1 3 966 1703 259 57 103 chr1 50017741 50018179 -147177253 + Lx9 LINE L1 6915 7343 -301 3 966 327 78 0 0 chr1 50018214 50018265 -147177167 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 966 22 35 0 0 chr1 50019535 50019564 -147175868 + AT_rich Low_complexity Low_complexity 1 29 0 3 966 742 304 82 22 chr1 50020183 50020499 -147174933 + Lx6 LINE L1 7099 7433 -27 3 966 503 201 13 13 chr1 50021482 50021633 -147173799 + L1_Mur3 LINE L1 2999 3149 -2731 3 966 214 143 20 20 chr1 50021635 50021685 -147173747 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4 966 5087 175 53 17 chr1 50021713 50022760 -147172672 - Lx2B LINE L1 -4 6996 5912 4 966 952 135 35 6 chr1 50022760 50022931 -147172501 + Lx2A1 LINE L1 5726 5901 -1107 4 966 226 271 62 54 chr1 50023214 50023343 -147172089 - L1M2 LINE L1 -402 5478 5349 4 966 633 301 76 9 chr1 50023351 50023703 -147171729 - L1M2 LINE L1 -2281 3862 3458 4 966 407 330 83 36 chr1 50023753 50024055 -147171377 - L1M2 LINE L1 -2743 3400 3085 4 966 35 24 0 0 chr1 50024064 50024106 -147171326 + AT_rich Low_complexity Low_complexity 1 42 0 4 966 376 295 53 62 chr1 50024271 50024638 -147170794 - L1_Mur3 LINE L1 -3182 2665 2273 4 966 200 208 0 0 chr1 50024776 50024824 -147170608 + T-rich Low_complexity Low_complexity 1 48 0 4 966 3153 117 10 16 chr1 50024850 50025344 -147170088 - L1_Mus3 LINE L1 -8 6630 6140 4 966 269 316 41 68 chr1 50025546 50025692 -147169740 - ORR1D2 LTR MaLR -223 147 6 4 966 30 0 0 0 chr1 50025714 50025744 -147169688 + AT_rich Low_complexity Low_complexity 1 30 0 4 966 306 43 0 0 chr1 50026247 50026293 -147169139 + Lx LINE L1 6602 6647 -7 5 966 210 253 24 12 chr1 50026552 50026636 -147168796 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 966 187 338 60 60 chr1 50027077 50027244 -147168188 - L3 LINE CR1 -3428 1061 895 5 966 22 0 0 0 chr1 50027491 50027513 -147167919 + AT_rich Low_complexity Low_complexity 1 22 0 5 966 1247 86 0 0 chr1 50027854 50028029 -147167403 + L1_Mus1 LINE L1 6393 6567 0 5 966 27 62 0 0 chr1 50028053 50028101 -147167331 + AT_rich Low_complexity Low_complexity 1 48 0 5 966 3542 10 2 0 chr1 50028697 50029092 -147166340 - MTA_Mm LTR MaLR 0 396 1 5 966 9093 30 5 4 chr1 50029092 50030189 -147165243 - MTA_Mm-int LTR MaLR 0 1098 1 5 966 3542 10 2 0 chr1 50030189 50030584 -147164848 - MTA_Mm LTR MaLR 0 396 1 5 966 229 265 16 57 chr1 50030591 50030715 -147164717 + A-rich Low_complexity Low_complexity 2 120 0 5 966 25 75 0 0 chr1 50030940 50030993 -147164439 + AT_rich Low_complexity Low_complexity 1 53 0 5 966 29 94 0 0 chr1 50031884 50031969 -147163463 + AT_rich Low_complexity Low_complexity 1 85 0 5 966 5603 91 17 2 chr1 50032665 50033559 -147161873 + L1_Mus1 LINE L1 5481 6386 -181 6 966 655 91 0 0 chr1 50033533 50033621 -147161811 - L1_Mur3 LINE L1 -1335 4545 4458 6 966 5604 135 2 54 chr1 50033615 50035098 -147160334 - L1Md_F LINE L1 -3768 2115 725 6 966 374 273 23 8 chr1 50035100 50035233 -147160199 - L1Md_F LINE L1 -5807 809 675 6 966 345 250 67 33 chr1 50035325 50035445 -147159987 - L1VL1 LINE L1 -6052 370 247 6 966 561 0 0 0 chr1 50035506 50035575 -147159857 - L1Md_T LINE L1 0 6582 6514 6 966 1081 88 0 33 chr1 50035575 50035727 -147159705 - B1_Mus1 SINE Alu 0 148 2 6 966 645 255 82 111 chr1 50036032 50036249 -147159183 + Lx9 LINE L1 7232 7437 -207 6 966 3081 61 8 8 chr1 50036249 50036645 -147158787 - MTA_Mm LTR MaLR 0 396 1 6 966 645 255 82 111 chr1 50036645 50036851 -147158581 + Lx9 LINE L1 7438 7643 -1 6 966 539 358 43 16 chr1 50036918 50037230 -147158202 + Tigger7 DNA MER2_type 23 345 -2146 6 966 341 344 54 22 chr1 50037614 50037837 -147157595 - Tigger5 DNA MER2_type 0 2406 2177 6 966 3062 290 67 25 chr1 50038458 50039533 -147155899 + Lx7 LINE L1 6061 7180 -516 7 966 276 92 0 97 chr1 50039551 50039623 -147155809 + A-rich Low_complexity Low_complexity 2 66 0 7 966 410 32 144 31 chr1 50039630 50039790 -147155642 + (CAAAC)n Simple_repeat Simple_repeat 2 179 0 7 966 852 301 84 50 chr1 50040799 50041237 -147154195 + RMER13A LTR ERVK 14 466 -394 7 966 266 320 52 0 chr1 50041464 50041587 -147153845 - B4 SINE B4 -148 144 9 7 966 1531 188 80 6 chr1 50041784 50042121 -147153311 + RMER1B Other Other 695 1056 -10 7 966 1069 314 61 13 chr1 50042164 50042555 -147152877 - Lx6 LINE L1 -26 7434 7025 7 966 186 131 0 62 chr1 50042631 50042696 -147152736 + T-rich Low_complexity Low_complexity 5 65 0 7 966 490 200 42 0 chr1 50043484 50043604 -147151828 - Lx6 LINE L1 -7 7453 7329 7 966 959 193 28 39 chr1 50043604 50043782 -147151650 + RLTR21 LTR ERVK 2 177 -1395 7 966 315 127 0 53 chr1 50043788 50043863 -147151569 - L1Md_F2 LINE L1 0 6582 6512 8 966 3017 100 50 15 chr1 50043863 50044341 -147151091 + RLTR44C LTR ERVK 1 495 -7 8 966 6640 70 52 8 chr1 50044342 50045319 -147150113 - L1_Mus2 LINE L1 -52 6514 5500 8 966 4064 118 14 58 chr1 50045318 50046040 -147149392 + L1_Mus2 LINE L1 4749 5438 -445 8 966 3751 174 58 8 chr1 50046040 50046746 -147148686 + RLTR21 LTR ERVK 164 904 -668 7 966 2327 188 150 98 chr1 50046746 50046995 -147148437 - RMER6-int LTR ERVK -332 2845 2562 8 966 260 295 0 0 chr1 50046995 50047056 -147148376 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 8 966 2327 188 150 98 chr1 50047056 50047491 -147147941 - RMER6-int LTR ERVK -332 2561 2062 8 966 6400 147 1 3 chr1 50047491 50047535 -147147897 - Lx LINE L1 -5 6649 6606 8 966 2244 63 17 3 chr1 50047535 50047836 -147147596 - L1_Mus1 LINE L1 -2 6565 6261 8 966 19151 179 25 18 chr1 50047836 50052648 -147142784 - Lx LINE L1 -49 6605 1756 8 966 2203 200 57 20 chr1 50052647 50053466 -147141966 - L1VL4 LINE L1 -2513 1102 331 8 966 5888 59 14 74 chr1 50053472 50054353 -147141079 + RMER17A-int LTR ERVK 901 1728 0 8 966 2371 84 22 8 chr1 50054353 50054687 -147140745 + RMER17A LTR ERVK 1 339 -412 8 966 1162 47 12 17 chr1 50054687 50054860 -147140572 + (TCTCC)n Simple_repeat Simple_repeat 2 173 0 8 966 2371 132 52 14 chr1 50054860 50055021 -147140411 + RMER17A LTR ERVK 340 555 -196 8 966 195 42 0 0 chr1 50055021 50055045 -147140387 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 9 966 2068 140 57 15 chr1 50055045 50055221 -147140211 + RMER17A LTR ERVK 556 733 -18 8 966 225 366 54 0 chr1 50055238 50055331 -147140101 - PB1D10 SINE Alu 0 117 20 9 966 333 0 0 0 chr1 50055659 50055696 -147139736 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 966 504 0 0 0 chr1 50055696 50055751 -147139681 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 966 245 382 0 76 chr1 50055758 50055877 -147139555 - RSINE1 SINE B4 0 165 56 9 966 515 88 0 0 chr1 50056018 50056086 -147139346 - B1_Mus2 SINE Alu -78 69 2 9 966 25 0 0 0 chr1 50057152 50057177 -147138255 + AT_rich Low_complexity Low_complexity 1 25 0 9 966 295 309 8 53 chr1 50057335 50057468 -147137964 + RMER30 DNA MER1_type 7 133 -69 9 966 279 0 0 0 chr1 50057468 50057499 -147137933 + (T)n Simple_repeat Simple_repeat 1 31 0 9 966 681 291 121 28 chr1 50058699 50058982 -147136450 + Lx7 LINE L1 5450 5732 -1964 9 966 459 125 0 0 chr1 50058982 50059054 -147136378 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 966 676 280 156 58 chr1 50059054 50059495 -147135937 + Lx7 LINE L1 5733 6207 -1489 9 966 2142 252 38 52 chr1 50059492 50060149 -147135283 + Lx7 LINE L1 6832 7479 -217 9 966 495 0 0 0 chr1 50060189 50060244 -147135188 + (TTTTA)n Simple_repeat Simple_repeat 5 59 0 1 966 36 53 0 0 chr1 50060321 50060378 -147135054 + AT_rich Low_complexity Low_complexity 1 57 0 1 966 855 328 60 53 chr1 50060411 50060841 -147134591 + Lx7 LINE L1 6215 6638 -1058 1 966 1141 78 0 0 chr1 50060841 50060983 -147134449 + B1_Mus2 SINE Alu 1 142 -5 1 966 855 328 60 53 chr1 50060983 50061122 -147134310 + Lx7 LINE L1 6639 6788 -908 1 966 4701 138 14 19 chr1 50061236 50061672 -147133760 - Lx2 LINE L1 0 6997 6564 1 966 2606 118 7 36 chr1 50061672 50062087 -147133345 + RLTR9D LTR ERVK 1 403 0 1 966 4701 138 14 19 chr1 50062087 50062438 -147132994 - Lx2 LINE L1 -434 6563 6214 1 966 3272 171 87 13 chr1 50062438 50063067 -147132365 - RLTR17 LTR ERVK -16 676 1 1 966 3497 147 37 0 chr1 50063067 50063660 -147131772 - Lx2 LINE L1 -767 6230 5616 1 966 1068 168 115 86 chr1 50063660 50063973 -147131459 + RLTRETN_Mm LTR ERVK 1 322 0 1 966 6124 129 25 96 chr1 50063977 50065233 -147130199 + MMETn-int LTR ERVK 3 1169 -3675 1 966 3827 216 68 105 chr1 50065231 50066298 -147129134 + ETnERV2-int LTR ERVK 2628 3644 -3762 1 966 1031 63 0 0 chr1 50066298 50066425 -147129007 - B1_Mus2 SINE Alu -19 128 2 1 966 5088 167 33 54 chr1 50066425 50067927 -147127505 + ETnERV2-int LTR ERVK 2356 4088 -3318 1 966 6747 134 14 3 chr1 50068029 50069005 -147126427 + ETnERV2-int LTR ERVK 6222 7208 -198 1 966 350 216 328 5 chr1 50069005 50069200 -147126232 + RLTR13D6 LTR ERVK 158 415 -487 1 966 21 0 0 0 chr1 50069212 50069233 -147126199 + AT_rich Low_complexity Low_complexity 1 21 0 1 120 7980 57 1 0 chr1 50069233 50070220 -147125212 - L1Md_F2 LINE L1 -8 6574 5587 1 967 10145 66 3 0 chr1 50070221 50071532 -147123900 + L1Md_F2 LINE L1 4262 5576 -307 1 967 637 189 33 8 chr1 50071533 50071690 -147123742 + ETnERV-int LTR ERVK 3154 3286 -28 1 967 897 220 26 106 chr1 50071690 50072040 -147123392 + RLTRETN_Mm LTR ERVK 1 322 0 1 967 8756 191 36 16 chr1 50072040 50073905 -147121527 - Lx2 LINE L1 -262 5615 3713 1 967 428 66 48 32 chr1 50073899 50073962 -147121470 + L1_Mm LINE L1 5513 5576 -307 1 967 637 189 33 8 chr1 50073963 50074120 -147121312 + ETnERV-int LTR ERVK 3154 3286 -28 1 967 897 220 26 106 chr1 50074120 50074470 -147120962 + RLTRETN_Mm LTR ERVK 1 322 0 1 967 15642 189 156 13 chr1 50074470 50077102 -147118330 - L1VL4 LINE L1 -262 5624 2466 1 967 210 37 0 0 chr1 50077102 50077129 -147118303 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 967 15642 189 156 13 chr1 50077129 50077527 -147117905 - L1VL4 LINE L1 -3421 2465 2047 1 967 387 0 0 0 chr1 50077527 50077570 -147117862 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 967 15642 189 156 13 chr1 50077570 50078011 -147117421 - L1VL4 LINE L1 -3840 2046 1598 1 967 293 0 27 0 chr1 50078011 50078048 -147117384 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 967 15642 145 82 7 chr1 50078048 50078529 -147116903 - L1VL4 LINE L1 -4289 1597 1116 1 967 2151 51 0 61 chr1 50078630 50078960 -147116472 + L1Md_F3 LINE L1 6288 6584 0 1 967 455 210 35 9 chr1 50078960 50079097 -147116335 - RLTR10A LTR ERVK -132 258 139 1 967 1962 296 55 41 chr1 50079135 50081321 -147114111 - IAP-d-int LTR ERVK -204 7040 3544 1 967 262 175 31 31 chr1 50081406 50081471 -147113961 - MMERVK10C-int LTR ERVK -3726 3855 3791 1 967 305 304 40 48 chr1 50081586 50081814 -147113618 - IAP-d-int LTR ERVK -4182 2360 2135 1 967 334 229 54 54 chr1 50082572 50082683 -147112749 - RLTR10-int LTR ERVK -1559 428 318 1 967 495 250 149 21 chr1 50082702 50082943 -147112489 - RLTR10A LTR ERVK 0 411 140 1 967 2380 210 56 45 chr1 50082997 50083570 -147111862 - L1VL4 LINE L1 -5536 766 188 1 967 275 282 0 25 chr1 50083570 50083650 -147111782 + Lx7 LINE L1 6833 6910 -786 1 967 1329 250 27 18 chr1 50083692 50084022 -147111410 + ORR1B2 LTR MaLR 35 367 0 1 967 498 339 67 35 chr1 50084022 50084337 -147111095 + Lx7 LINE L1 6947 7271 -425 1 967 245 167 19 0 chr1 50084367 50084421 -147111011 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 967 2405 33 26 3 chr1 50084666 50084973 -147110459 + L1Md_F3 LINE L1 6270 6583 -1 1 967 378 313 104 30 chr1 50085120 50085255 -147110177 + B1_Mur1 SINE Alu 4 148 -1 1 967 436 178 0 0 chr1 50086483 50086556 -147108876 - L1_Mus2 LINE L1 -268 6298 6226 1 967 845 284 144 18 chr1 50087199 50087532 -147107900 + Lx7 LINE L1 6535 6909 -787 1 967 40 67 0 0 chr1 50087573 50087648 -147107784 + AT_rich Low_complexity Low_complexity 1 75 0 1 967 900 123 0 0 chr1 50088235 50088381 -147107051 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 1 967 4868 55 13 2 chr1 50088393 50089012 -147106420 - L1_Mus1 LINE L1 -6 6561 5936 1 967 186 43 0 0 chr1 50089147 50089170 -147106262 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 967 884 141 7 0 chr1 50089174 50089316 -147106116 - B1_Mus1 SINE Alu -1 147 5 1 967 22 0 0 0 chr1 50089751 50089773 -147105659 + AT_rich Low_complexity Low_complexity 1 22 0 1 967 327 25 0 0 chr1 50090888 50090928 -147104504 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 967 23 33 0 0 chr1 50091074 50091104 -147104328 + AT_rich Low_complexity Low_complexity 1 30 0 1 967 217 145 71 14 chr1 50091355 50091425 -147104007 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1 967 1182 336 58 60 chr1 50091513 50092726 -147102706 + RLTR6-int LTR ERV1 1289 2499 -5279 1 967 2897 43 3 0 chr1 50092775 50093120 -147102312 - ORR1A1 LTR MaLR 0 346 1 1 967 462 335 40 10 chr1 50093120 50093322 -147102110 + RLTR4_MM-int LTR ERV1 4028 4235 -3366 1 967 1113 297 45 22 chr1 50093612 50094093 -147101339 + RLTR6-int LTR ERV1 4757 5233 -2323 1 967 277 299 103 0 chr1 50094293 50094380 -147101052 + RLTR6-int LTR ERV1 5493 5588 -2013 1 967 737 322 14 12 chr1 50095885 50096231 -147099201 + MuRRS4-int LTR ERV1 4569 4915 -148 1 967 335 304 109 69 chr1 50096536 50096783 -147098649 + RMER2 LTR ERV1 290 546 -21 1 967 240 196 0 35 chr1 50096845 50096903 -147098529 + MER95 LTR ERV 211 266 -165 1 967 35 24 0 0 chr1 50098727 50098769 -147096663 + AT_rich Low_complexity Low_complexity 1 42 0 1 967 423 0 0 0 chr1 50098890 50098937 -147096495 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 967 195 129 0 0 chr1 50100061 50100092 -147095340 + (T)n Simple_repeat Simple_repeat 1 31 0 1 967 4653 161 11 114 chr1 50100516 50101234 -147094198 + Lx LINE L1 5216 5841 -42 1 967 1031 109 0 13 chr1 50101234 50101371 -147094061 + B1_Mus2 SINE Alu 1 137 -10 1 967 249 33 0 0 chr1 50101371 50101401 -147094031 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 967 1031 109 0 13 chr1 50101401 50101412 -147094020 + B1_Mus2 SINE Alu 138 147 0 1 967 4653 142 37 68 chr1 50101412 50102252 -147093180 + Lx LINE L1 5827 6654 0 1 967 27 81 0 0 chr1 50102259 50102321 -147093111 + AT_rich Low_complexity Low_complexity 1 62 0 1 967 1370 228 122 29 chr1 50102621 50103033 -147092399 - RMER16 LTR ERVK 0 533 1 1 967 261 260 84 72 chr1 50103445 50103528 -147091904 - MLT1A1 LTR MaLR -42 366 283 1 967 1970 147 25 0 chr1 50103629 50103948 -147091484 + ORR1A2 LTR MaLR 1 327 0 1 967 493 289 111 31 chr1 50104946 50105171 -147090261 + RMER15 LTR ERVL 293 535 -40 1 967 25 0 0 0 chr1 50105239 50105264 -147090168 + AT_rich Low_complexity Low_complexity 1 25 0 1 967 20233 112 79 2 chr1 50106024 50106589 -147088843 - L1Md_F LINE L1 -1103 4780 4209 1 967 483 18 0 0 chr1 50106589 50106645 -147088787 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 967 20233 121 69 1 chr1 50106645 50109873 -147085559 - L1Md_F LINE L1 -1675 4208 725 1 967 419 249 56 46 chr1 50109845 50110054 -147085378 - L1Md_F LINE L1 -5814 802 398 1 967 319 214 29 188 chr1 50110085 50110223 -147085209 - L1VL1 LINE L1 -6060 362 247 1 967 409 279 36 0 chr1 50110251 50110362 -147085070 + PB1D9 SINE Alu 1 115 -5 1 967 851 128 12 12 chr1 50110377 50110543 -147084889 + GA-rich Low_complexity Low_complexity 3 168 0 1 967 311 141 13 0 chr1 50110561 50110639 -147084793 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 1 967 344 252 78 8 chr1 50110736 50110864 -147084568 + B1_Mur1 SINE Alu 4 140 -9 1 967 907 278 65 52 chr1 50110994 50111488 -147083944 + MT2B2 LTR ERVL 3 584 0 1 967 267 23 0 44 chr1 50111535 50111580 -147083852 - L1Md_F2 LINE L1 -12 6570 6528 1 967 238 266 136 42 chr1 50111610 50111728 -147083704 + B1_Mur2 SINE Alu 13 141 -8 1 967 186 43 0 0 chr1 50111730 50111753 -147083679 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 967 271 295 0 0 chr1 50111951 50112012 -147083420 + ID2 SINE ID 12 72 -11 1 967 389 244 42 14 chr1 50112202 50112335 -147083097 + B1_Mus1 SINE Alu 12 150 0 1 967 460 286 0 0 chr1 50112968 50113080 -147082352 - B1_Mur1 SINE Alu -19 130 19 1 967 241 352 55 0 chr1 50113199 50113290 -147082142 - RSINE1 SINE B4 -27 138 43 1 967 7840 62 2 0 chr1 50113952 50114944 -147080488 + L1Md_F2 LINE L1 5587 6580 -2 1 967 459 0 0 0 chr1 50115486 50115537 -147079895 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 967 5114 122 11 4 chr1 50115744 50116585 -147078847 + MusHAL1 LINE L1 352 1198 -1514 1 967 2449 61 3 0 chr1 50116600 50116910 -147078522 + L1_Mus1 LINE L1 6256 6566 -1 1 967 9462 188 56 6 chr1 50116919 50117719 -147077713 + L1_Mus2 LINE L1 3815 4623 -1254 1 967 735 134 0 0 chr1 50117719 50117838 -147077594 + (TAG)n Simple_repeat Simple_repeat 1 119 0 1 967 9462 136 40 7 chr1 50117838 50119688 -147075744 + L1_Mus2 LINE L1 4624 6565 -1 1 967 324 120 0 0 chr1 50120106 50120156 -147075276 + (A)n Simple_repeat Simple_repeat 1 50 0 1 967 213 180 0 0 chr1 50120643 50120693 -147074739 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 967 221 154 26 0 chr1 50121482 50121521 -147073911 + (CCCA)n Simple_repeat Simple_repeat 1 40 0 1 967 371 214 91 10 chr1 50121583 50121682 -147073750 + RMER10B LTR ERVL 292 398 0 1 967 465 286 90 80 chr1 50121884 50121916 -147073516 + B3 SINE B2 9 33 -183 1 967 6988 39 4 0 chr1 50121916 50122759 -147072673 + L1Md_F2 LINE L1 5736 6581 -1 1 967 465 286 90 80 chr1 50122759 50122927 -147072505 + B3 SINE B2 34 211 -5 1 967 216 122 0 0 chr1 50123060 50123101 -147072331 + (T)n Simple_repeat Simple_repeat 1 41 0 1 967 602 317 81 87 chr1 50125012 50125509 -147069923 - RMER5 LTR ERV1 -8 526 33 1 967 352 323 99 22 chr1 50126316 50126538 -147068894 + RMER5 LTR ERV1 200 438 -96 1 967 318 310 68 31 chr1 50126550 50126713 -147068719 + RLTR23 LTR ERV1 262 430 0 1 967 21 57 0 0 chr1 50127630 50127665 -147067767 + AT_rich Low_complexity Low_complexity 1 35 0 1 967 21 0 0 0 chr1 50127727 50127748 -147067684 + AT_rich Low_complexity Low_complexity 1 21 0 1 967 1139 33 43 0 chr1 50128178 50128391 -147067041 + (CATATA)n Simple_repeat Simple_repeat 1 222 0 1 967 21 36 0 0 chr1 50128515 50128543 -147066889 + AT_rich Low_complexity Low_complexity 1 28 0 1 967 21 36 0 0 chr1 50128870 50128898 -147066534 + AT_rich Low_complexity Low_complexity 1 28 0 1 967 345 24 0 0 chr1 50128913 50128955 -147066477 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1 967 468 0 0 0 chr1 50130256 50130308 -147065124 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 967 201 259 0 0 chr1 50130718 50130776 -147064656 + A-rich Low_complexity Low_complexity 1 58 0 1 967 881 309 158 27 chr1 50131773 50132825 -147062607 - L1M2 LINE L1 -1245 4898 3709 1 967 477 171 0 0 chr1 50133073 50133161 -147062271 + 4.5SRNA scRNA scRNA 5 92 -2 2 967 288 255 91 10 chr1 50133106 50133205 -147062227 + MT2B2 LTR ERVL 197 303 -281 2 967 1022 58 7 7 chr1 50133171 50133309 -147062123 + B1_Mus1 SINE Alu 11 148 0 2 967 222 146 0 20 chr1 50133309 50133358 -147062074 + A-rich Low_complexity Low_complexity 5 52 0 2 967 3426 271 39 20 chr1 50134059 50135063 -147060369 + Lx7 LINE L1 6088 7110 -586 2 967 609 14 0 0 chr1 50135420 50135490 -147059942 + (GGGAA)n Simple_repeat Simple_repeat 4 73 0 2 967 1124 98 6 0 chr1 50135490 50135662 -147059770 + (GGAGA)n Simple_repeat Simple_repeat 1 174 0 2 967 324 302 134 27 chr1 50136128 50136390 -147059042 + L1M4b LINE L1 1501 1790 -5544 2 967 234 275 17 68 chr1 50136822 50136939 -147058493 - L1M1 LINE L1 -705 5598 5488 2 967 21 36 0 0 chr1 50137158 50137186 -147058246 + AT_rich Low_complexity Low_complexity 1 28 0 2 967 1234 324 48 10 chr1 50137279 50137859 -147057573 - Lx8 LINE L1 -298 7175 6574 2 967 397 329 112 34 chr1 50138219 50138551 -147056881 - Lx7 LINE L1 -1682 5962 5606 2 967 762 93 0 0 chr1 50138551 50138659 -147056773 + (GAAA)n Simple_repeat Simple_repeat 4 111 0 2 967 1001 105 0 7 chr1 50138659 50138813 -147056619 + (GGGGA)n Simple_repeat Simple_repeat 4 156 0 2 967 2475 159 30 50 chr1 50139194 50139690 -147055742 - Lx2 LINE L1 -6 6991 6506 2 967 4138 201 11 44 chr1 50139741 50140110 -147055322 - RMER13B LTR ERVK -95 813 459 2 967 396 0 0 0 chr1 50140110 50140154 -147055278 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 967 216 0 0 0 chr1 50140164 50140188 -147055244 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 967 3660 177 40 0 chr1 50140195 50140862 -147054570 - Lx LINE L1 -8 6646 5953 2 967 4138 201 11 44 chr1 50140862 50141314 -147054118 - RMER13B LTR ERVK -450 458 1 2 967 797 143 8 0 chr1 50141314 50141447 -147053985 - Lx2 LINE L1 -505 6495 6362 2 967 1085 135 0 0 chr1 50141471 50141627 -147053805 + B2_Mm2 SINE B2 2 157 -38 2 967 266 98 0 19 chr1 50141627 50141679 -147053753 + (TAA)n Simple_repeat Simple_repeat 3 53 0 2 967 2071 159 56 3 chr1 50141679 50142038 -147053394 + Lx2 LINE L1 5999 6376 -621 2 967 22 0 0 0 chr1 50142854 50142876 -147052556 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 315 164 0 0 chr1 50144758 50144819 -147050613 + CT-rich Low_complexity Low_complexity 2 62 0 2 967 3970 127 31 15 chr1 50145578 50146249 -147049183 + Lx3A LINE L1 5807 6488 -493 2 967 222 91 0 0 chr1 50146379 50146412 -147049020 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 967 2269 244 75 17 chr1 50147554 50148934 -147046498 + L1_Rod LINE L1 627 2083 -3764 2 967 286 250 0 56 chr1 50149126 50149215 -147046217 + L1_Rod LINE L1 4173 4256 -1591 2 967 1368 220 112 15 chr1 50149226 50149628 -147045804 + L1_Rod LINE L1 5348 5788 -59 2 967 1208 278 14 7 chr1 50150204 50150494 -147044938 + ORR1D1 LTR MaLR 3 294 -80 2 967 2355 200 60 103 chr1 50150494 50151229 -147044203 - L1_Mur2 LINE L1 -2544 3333 2631 2 967 180 97 0 0 chr1 50151229 50151260 -147044172 + (T)n Simple_repeat Simple_repeat 1 31 0 2 967 360 64 0 0 chr1 50151316 50151363 -147044069 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 967 1910 230 40 14 chr1 50151396 50152195 -147043237 - L1_Mur2 LINE L1 -4157 1720 850 2 967 27 0 0 0 chr1 50152631 50152658 -147042774 + AT_rich Low_complexity Low_complexity 1 27 0 2 967 3389 172 73 4 chr1 50152747 50153432 -147042000 + Lx5 LINE L1 4862 5593 -284 2 967 1694 258 41 45 chr1 50153459 50153966 -147041466 + RMER19C LTR ERVK 107 611 0 2 967 2884 175 26 4 chr1 50153966 50154504 -147040928 + Lx5 LINE L1 5593 6142 -908 2 967 1993 210 13 5 chr1 50154527 50154910 -147040522 + Lx5 LINE L1 6295 6680 -370 2 967 782 218 23 29 chr1 50154904 50155098 -147040334 + Lx5 LINE L1 6831 7054 -4 2 967 612 266 8 0 chr1 50155133 50155261 -147040171 + B3 SINE B2 8 136 -80 2 967 22 0 0 0 chr1 50155283 50155305 -147040127 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 365 250 31 20 chr1 50155384 50155482 -147039950 - RLTR23 LTR ERV1 -4 426 328 2 967 450 222 18 18 chr1 50155517 50155627 -147039805 + RLTR22_Mur LTR ERVK 330 439 -1409 2 967 1072 236 47 43 chr1 50156007 50156086 -147039346 + RLTR22_Mur LTR ERVK 508 580 -1268 2 967 618 78 10 0 chr1 50156086 50156189 -147039243 - L1Md_F2 LINE L1 -2 6580 6477 2 967 1072 236 47 43 chr1 50156189 50156410 -147039022 + RLTR22_Mur LTR ERVK 581 809 -1039 2 967 556 195 22 131 chr1 50156482 50156665 -147038767 + RLTR22_Mur LTR ERVK 1590 1752 -96 2 967 26 0 0 0 chr1 50158358 50158384 -147037048 + AT_rich Low_complexity Low_complexity 1 26 0 2 967 1028 135 0 0 chr1 50158453 50158601 -147036831 - B1_Mus1 SINE Alu 0 148 1 2 967 38 61 0 0 chr1 50158701 50158767 -147036665 + AT_rich Low_complexity Low_complexity 1 66 0 2 967 3267 104 13 4 chr1 50159567 50160040 -147035392 + L1_Mus4 LINE L1 6099 6575 -61 2 967 4797 150 50 18 chr1 50160051 50160920 -147034512 - RMER17A2 LTR ERVK -10 896 1 2 967 301 138 0 0 chr1 50160920 50160985 -147034447 + L1_Mus4 LINE L1 6571 6635 -1 2 967 321 135 0 0 chr1 50161073 50161125 -147034307 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 967 389 339 97 76 chr1 50161143 50161536 -147033896 + Lx9 LINE L1 7001 7401 -243 2 967 21 0 0 0 chr1 50162176 50162197 -147033235 + AT_rich Low_complexity Low_complexity 1 21 0 2 967 450 0 0 0 chr1 50162219 50162269 -147033163 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 967 218 284 107 27 chr1 50162828 50162940 -147032492 - MIR SINE MIR -54 208 88 2 967 7475 70 2 10 chr1 50163191 50164105 -147031327 + L1Md_F2 LINE L1 4591 5503 -380 2 967 2168 19 114 0 chr1 50164105 50164367 -147031065 - RLTR10B LTR ERVK 0 292 1 2 967 7475 70 2 10 chr1 50164367 50164456 -147030976 + L1Md_F2 LINE L1 5504 5586 -297 2 967 7791 57 14 0 chr1 50164456 50165438 -147029994 + L1Md_F2 LINE L1 5587 6582 0 2 967 629 230 0 68 chr1 50165448 50165485 -147029947 - MYSERV6-int LTR ERVK 0 8959 8924 2 967 195 42 0 0 chr1 50165485 50165509 -147029923 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2 967 629 230 0 68 chr1 50165509 50165662 -147029770 - MYSERV6-int LTR ERVK -36 8923 8782 2 967 447 216 17 33 chr1 50165685 50165805 -147029627 - MYSERV6-int LTR ERVK -174 8785 8668 2 967 216 97 0 0 chr1 50165806 50165837 -147029595 + (A)n Simple_repeat Simple_repeat 1 31 0 2 967 26 0 0 0 chr1 50166105 50166131 -147029301 + AT_rich Low_complexity Low_complexity 1 26 0 2 967 25 51 0 0 chr1 50166314 50166353 -147029079 + AT_rich Low_complexity Low_complexity 1 39 0 2 967 306 138 0 0 chr1 50166520 50166578 -147028854 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 967 495 0 0 0 chr1 50166578 50166633 -147028799 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 967 22 35 0 0 chr1 50166938 50166967 -147028465 + AT_rich Low_complexity Low_complexity 1 29 0 2 967 301 228 10 52 chr1 50167144 50167241 -147028191 + L1_Rod LINE L1 3785 3877 -1970 2 967 338 289 22 22 chr1 50167457 50167595 -147027837 + L1M2 LINE L1 4844 4981 -1162 2 967 275 315 38 33 chr1 50168046 50168256 -147027176 - L1MC LINE L1 -937 5209 4999 2 967 31 0 0 0 chr1 50168318 50168349 -147027083 + AT_rich Low_complexity Low_complexity 1 31 0 2 967 32 0 0 0 chr1 50168370 50168402 -147027030 + AT_rich Low_complexity Low_complexity 1 32 0 2 967 22 0 0 0 chr1 50170384 50170406 -147025026 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 21 0 0 0 chr1 50170686 50170707 -147024725 + AT_rich Low_complexity Low_complexity 1 21 0 2 967 541 215 99 8 chr1 50170709 50170840 -147024592 + B1_Mur1 SINE Alu 1 143 -6 2 967 339 295 59 26 chr1 50170948 50171101 -147024331 + L1MEg LINE L1 1207 1364 -4720 2 967 1691 232 81 76 chr1 50172058 50172702 -147022730 + Lx9 LINE L1 6983 7629 -15 2 967 328 300 0 11 chr1 50172937 50173028 -147022404 + MTE2a LTR MaLR 22 111 -268 2 967 1917 214 26 5 chr1 50173033 50173422 -147022010 + MTC LTR MaLR 15 411 -10 2 967 632 322 31 66 chr1 50173433 50173692 -147021740 + MTE2a LTR MaLR 123 372 -7 2 967 408 20 0 0 chr1 50173978 50174027 -147021405 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 967 212 184 0 0 chr1 50174032 50174070 -147021362 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 2 967 395 331 25 8 chr1 50174636 50174758 -147020674 + ID_B1 SINE B4 3 126 -98 2 967 2893 34 3 0 chr1 50175039 50175390 -147020042 - L1Md_T LINE L1 -2 6580 6229 2 967 1428 19 0 0 chr1 50175391 50175553 -147019879 + L1Md_T LINE L1 6059 6220 -362 2 967 210 230 43 34 chr1 50175966 50176083 -147019349 + (TAAA)n Simple_repeat Simple_repeat 4 121 0 2 967 571 146 0 20 chr1 50176254 50176352 -147019080 - B1_Mus1 SINE Alu -52 96 1 2 967 22 35 0 0 chr1 50177775 50177804 -147017628 + AT_rich Low_complexity Low_complexity 1 29 0 2 967 407 293 95 0 chr1 50178468 50178584 -147016848 + B1_Mur1 SINE Alu 23 149 0 2 967 300 303 87 32 chr1 50178994 50179120 -147016312 - MER94 DNA AcHobo 0 134 2 2 967 35878 33 38 7 chr1 50179294 50185246 -147010186 - L1Md_T LINE L1 0 6582 451 2 967 370 310 51 17 chr1 50185413 50185531 -147009901 + RSINE1 SINE B4 42 163 -2 2 967 23 54 0 0 chr1 50185855 50185892 -147009540 + AT_rich Low_complexity Low_complexity 1 37 0 2 967 26 30 0 0 chr1 50186438 50186471 -147008961 + AT_rich Low_complexity Low_complexity 1 33 0 2 967 764 265 40 5 chr1 50186477 50186678 -147008754 - B3 SINE B2 0 216 9 2 967 3497 65 4 2 chr1 50186707 50187167 -147008265 - L1_Mus1 LINE L1 -1 6566 6106 2 967 384 22 0 0 chr1 50187289 50187334 -147008098 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 2 967 1117 193 5 0 chr1 50187412 50187624 -147007808 + Lx2 LINE L1 6783 6995 -2 2 967 22 0 0 0 chr1 50187628 50187650 -147007782 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 399 175 31 0 chr1 50188519 50188616 -147006816 + Lx9 LINE L1 7544 7643 -1 2 967 6624 223 81 73 chr1 50189869 50190825 -147004607 + L1_Mur1 LINE L1 830 1831 -4046 2 967 873 81 15 7 chr1 50190825 50190962 -147004470 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 2 967 6624 218 18 99 chr1 50190962 50191728 -147003704 + L1_Mur1 LINE L1 1832 2587 -3290 2 967 225 94 0 0 chr1 50191728 50191760 -147003672 + (CATA)n Simple_repeat Simple_repeat 4 35 0 2 967 6624 218 18 99 chr1 50191760 50191771 -147003661 + L1_Mur1 LINE L1 2588 2589 -3288 2 967 1742 36 14 5 chr1 50191771 50191993 -147003439 + L1Md_F2 LINE L1 6358 6581 -1 2 967 6624 218 18 99 chr1 50191993 50192172 -147003260 + L1_Mur1 LINE L1 2590 2617 -3260 2 967 216 67 0 0 chr1 50192172 50192202 -147003230 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 967 6624 218 18 99 chr1 50192202 50192849 -147002583 + L1_Mur1 LINE L1 2618 3270 -2607 2 967 370 82 0 2 chr1 50192861 50192931 -147002501 + L1_Mur1 LINE L1 3218 3290 -624 2 967 261 0 0 0 chr1 50192931 50192960 -147002472 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2 967 1083 139 0 0 chr1 50192984 50193164 -147002268 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 967 15034 171 148 11 chr1 50193164 50198805 -146996627 + Lx LINE L1 356 6646 -8 2 120 9966 175 21 17 chr1 50198883 50200928 -146994504 + L1_Mur1 LINE L1 3300 5353 -533 2 968 302 341 52 47 chr1 50200928 50201119 -146994313 + MER44D DNA MER2_type 56 247 -458 2 968 318 50 0 0 chr1 50201397 50201437 -146993995 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 968 477 0 0 0 chr1 50201437 50201489 -146993943 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 968 345 24 0 0 chr1 50201966 50202008 -146993424 + (TATG)n Simple_repeat Simple_repeat 2 43 0 3 968 964 272 87 4 chr1 50202008 50202274 -146993158 - Lx6 LINE L1 -28 7432 7145 3 968 263 206 14 42 chr1 50202285 50202356 -146993076 - L1MC LINE L1 -1478 4668 4600 3 968 334 240 9 9 chr1 50202371 50202476 -146992956 - Lx9 LINE L1 -20 7624 7520 3 968 468 0 0 0 chr1 50202477 50202529 -146992903 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 968 729 76 0 0 chr1 50202529 50202633 -146992799 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 968 207 125 0 0 chr1 50202671 50202711 -146992721 + (A)n Simple_repeat Simple_repeat 1 40 0 3 968 1666 228 31 47 chr1 50202714 50203229 -146992203 + Lx9 LINE L1 7035 7541 -103 3 968 3088 137 22 20 chr1 50203224 50203729 -146991703 - Lx3B LINE L1 -851 6122 5617 3 968 3358 142 24 9 chr1 50203729 50204303 -146991129 + Lx3B LINE L1 6388 6970 -3 3 968 459 0 0 0 chr1 50205016 50205067 -146990365 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 968 315 0 0 0 chr1 50205067 50205101 -146990331 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 968 207 171 0 0 chr1 50205276 50205311 -146990121 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 968 1108 178 108 41 chr1 50205407 50205563 -146989869 + RLTR22_Mur LTR ERVK 7 157 -1691 3 968 285 51 0 0 chr1 50205563 50205602 -146989830 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 3 968 1108 178 108 41 chr1 50205602 50205714 -146989718 + RLTR22_Mur LTR ERVK 158 292 -1556 3 968 3681 168 24 50 chr1 50205714 50206467 -146988965 + Lx LINE L1 5920 6652 -2 3 968 476 331 103 22 chr1 50206980 50207338 -146988094 + Lx9 LINE L1 6604 6990 -654 3 968 306 0 0 0 chr1 50207339 50207373 -146988059 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 968 354 333 17 60 chr1 50207386 50207619 -146987813 + Lx9 LINE L1 6985 7207 -437 3 968 30304 95 3 1 chr1 50207704 50212125 -146983307 + L1Md_A LINE L1 1154 5586 -297 3 968 6506 107 24 4 chr1 50212125 50213102 -146982330 + L1Md_F2 LINE L1 5587 6582 0 3 968 21 36 0 0 chr1 50213431 50213459 -146981973 + AT_rich Low_complexity Low_complexity 1 28 0 3 968 488 289 52 0 chr1 50214114 50214249 -146981183 - B1_Mus1 SINE Alu 0 148 7 3 968 1010 144 0 6 chr1 50214271 50214452 -146980980 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 968 519 69 0 0 chr1 50214552 50214624 -146980808 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 968 225 0 0 0 chr1 50214662 50214687 -146980745 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 968 21 57 0 0 chr1 50214835 50214870 -146980562 + AT_rich Low_complexity Low_complexity 1 35 0 3 968 477 309 60 25 chr1 50215167 50215366 -146980066 - B3 SINE B2 -10 206 1 3 968 22 0 0 0 chr1 50215367 50215389 -146980043 + AT_rich Low_complexity Low_complexity 1 22 0 3 968 266 235 0 12 chr1 50215480 50215566 -146979866 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 968 2196 121 102 27 chr1 50216309 50216751 -146978681 + IAPLTR2_Mm LTR ERVK 1 475 0 3 968 325 110 82 0 chr1 50216753 50216826 -146978606 + IAPEz-int LTR ERVK 3 81 -1906 3 968 1308 130 26 38 chr1 50216838 50217393 -146978039 + IAPEz-int LTR ERVK 10 321 -6160 3 968 3358 57 27 20 chr1 50217360 50217806 -146977626 + IAPEz-int LTR ERVK 214 662 -5819 3 968 2648 73 0 3 chr1 50217806 50218149 -146977283 + IAPEz-int LTR ERVK 1359 1700 -4781 3 968 6702 42 4 17 chr1 50218142 50218984 -146976448 + IAPEz-int LTR ERVK 5651 6481 0 3 968 2251 119 106 32 chr1 50218984 50219426 -146976006 + IAPLTR2_Mm LTR ERVK 1 475 0 3 968 240 175 0 73 chr1 50220141 50220209 -146975223 + Lx4A LINE L1 5739 5801 -1257 3 968 1469 293 38 27 chr1 50220207 50221089 -146974343 + L1_Mur3 LINE L1 3 1005 -6707 3 968 2565 195 67 31 chr1 50221088 50221643 -146973789 + Lx4A LINE L1 6484 7058 0 3 968 1038 236 30 8 chr1 50221647 50222007 -146973425 + L1_Mur3 LINE L1 1015 1385 -4495 3 968 6976 148 7 13 chr1 50222002 50223152 -146972280 + Lx2 LINE L1 5663 6805 -192 3 968 21 0 0 0 chr1 50223172 50223193 -146972239 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 309 345 74 22 chr1 50223257 50223527 -146971905 + L1MEc LINE L1 2238 2521 -3879 3 968 1261 62 11 0 chr1 50223679 50223855 -146971577 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 968 286 74 18 18 chr1 50223859 50223914 -146971518 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 968 1562 280 87 25 chr1 50225233 50225903 -146969529 + Lx7 LINE L1 5649 6359 -1337 3 968 1825 200 18 10 chr1 50225910 50226299 -146969133 + ORR1B1 LTR MaLR 1 392 -2 3 968 697 189 67 61 chr1 50226313 50226493 -146968939 + Lx6 LINE L1 6740 6920 -540 3 968 1388 216 258 13 chr1 50226895 50227723 -146967709 + L1_Mur2 LINE L1 834 1880 -3997 3 968 1910 250 66 30 chr1 50227723 50228226 -146967206 - RMER19C LTR ERVK -8 603 83 3 968 4276 153 11 14 chr1 50228602 50229337 -146966095 + Lx2 LINE L1 6261 6993 -4 3 968 391 167 27 14 chr1 50230350 50230423 -146965009 - RMER19C LTR ERVK -535 76 3 3 968 1856 231 32 13 chr1 50230423 50230581 -146964851 + L1_Mur2 LINE L1 1896 2052 -3825 3 968 354 80 0 0 chr1 50230581 50230631 -146964801 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 968 1856 231 32 13 chr1 50230631 50230999 -146964433 + L1_Mur2 LINE L1 2053 2432 -3445 3 968 12923 183 19 14 chr1 50230998 50231787 -146963645 - L1_Mm LINE L1 -468 5415 4629 3 968 302 0 0 26 chr1 50231787 50231826 -146963606 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 968 12923 183 19 14 chr1 50231826 50233739 -146961693 - L1_Mm LINE L1 -1255 4628 2702 3 968 498 128 11 11 chr1 50233735 50233830 -146961602 - MusHAL1 LINE L1 -2266 446 352 3 968 390 42 0 0 chr1 50234080 50234128 -146961304 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 968 921 44 0 0 chr1 50234128 50234242 -146961190 + (GAA)n Simple_repeat Simple_repeat 3 116 0 3 968 270 0 0 0 chr1 50234471 50234501 -146960931 + (CTG)n Simple_repeat Simple_repeat 2 31 0 3 968 240 355 54 0 chr1 50235473 50235566 -146959866 + RSINE1 SINE B4 44 141 -24 3 968 207 0 0 0 chr1 50235566 50235589 -146959843 + (A)n Simple_repeat Simple_repeat 1 23 0 3 968 454 286 0 0 chr1 50235690 50235802 -146959630 + B1_Mur1 SINE Alu 19 130 -19 3 968 368 198 72 90 chr1 50236455 50236566 -146958866 - B1_Mus1 SINE Alu -1 119 11 3 968 283 324 0 0 chr1 50236758 50236829 -146958603 - ID4 SINE ID -11 72 2 3 968 186 43 0 0 chr1 50237019 50237042 -146958390 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 968 219 339 92 30 chr1 50237045 50237176 -146958256 - B1_Mur2 SINE Alu -9 140 2 3 968 739 258 73 83 chr1 50237242 50237555 -146957877 - MT2B LTR ERVL 0 601 292 3 968 2015 120 3 3 chr1 50237513 50237830 -146957602 - BGLII LTR ERVK -104 317 1 3 968 4319 249 74 15 chr1 50237840 50239388 -146956044 + Lx5 LINE L1 5386 7054 -4 3 968 12686 197 30 16 chr1 50239464 50243176 -146952256 - Lx2B LINE L1 0 7000 3227 3 968 4365 113 40 47 chr1 50243186 50243368 -146952064 + L1_Mus3 LINE L1 1954 2158 -1756 3 968 1059 82 7 20 chr1 50243368 50243517 -146951915 + B1_Mus1 SINE Alu 2 148 0 3 968 4754 116 39 45 chr1 50243517 50244180 -146951252 + L1_Mus3 LINE L1 4545 4627 -1256 3 968 348 24 0 0 chr1 50244180 50244221 -146951211 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 968 4754 164 34 6 chr1 50244221 50245045 -146950387 + L1_Mus3 LINE L1 4628 5470 -413 3 968 5921 96 62 12 chr1 50245033 50245641 -146949791 - Lx3_Mus LINE L1 -107 6902 6301 3 968 6683 66 35 10 chr1 50245641 50246547 -146948885 + RLTR13B3 LTR ERVK 1 929 0 3 968 5921 96 62 12 chr1 50246547 50246816 -146948616 - Lx3_Mus LINE L1 -709 6300 5982 3 968 331 196 32 11 chr1 50246816 50246909 -146948523 + Lx3_Mus LINE L1 6915 7009 0 3 968 7327 103 16 5 chr1 50246992 50248172 -146947260 + L1_Mus3 LINE L1 5447 6637 -1 3 968 1251 242 141 21 chr1 50248333 50248368 -146947064 - MTC LTR MaLR 0 421 390 3 968 195 42 0 0 chr1 50248368 50248392 -146947040 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 968 1251 242 141 21 chr1 50248392 50248732 -146946700 - MTC LTR MaLR -32 389 1 3 968 207 225 0 0 chr1 50248769 50248809 -146946623 + (TATAA)n Simple_repeat Simple_repeat 4 43 0 3 968 256 182 26 13 chr1 50249235 50249313 -146946119 + CT-rich Low_complexity Low_complexity 4 82 0 3 968 13157 142 53 12 chr1 50250545 50251325 -146944107 - Lx2 LINE L1 -733 6264 5440 3 968 189 0 0 0 chr1 50251325 50251346 -146944086 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 968 13157 211 70 59 chr1 50251346 50251451 -146943981 - Lx2 LINE L1 -438 5439 5345 3 968 531 0 0 0 chr1 50251458 50251517 -146943915 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 3 968 864 112 0 0 chr1 50251517 50251634 -146943798 - B1_Mus1 SINE Alu -28 120 4 3 968 457 250 46 53 chr1 50251521 50251652 -146943780 - B4 SINE B4 -87 205 76 3 968 13157 211 70 59 chr1 50251634 50254778 -146940654 - Lx2 LINE L1 -533 5344 2033 3 968 567 187 0 0 chr1 50255522 50255613 -146939819 + Lx LINE L1 6193 6283 -371 3 968 1523 107 4 4 chr1 50255613 50255847 -146939585 + Lx LINE L1 6415 6648 -6 3 968 378 0 0 0 chr1 50256217 50256259 -146939173 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 968 551 212 98 94 chr1 50256921 50257069 -146938363 - URR1B DNA MER1_type 0 225 84 3 968 461 17 0 17 chr1 50257069 50257128 -146938304 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 968 551 212 98 94 chr1 50257128 50257203 -146938229 - URR1B DNA MER1_type -142 83 2 3 968 21 0 0 0 chr1 50258155 50258176 -146937256 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 192 217 0 0 chr1 50258244 50258290 -146937142 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 3 968 270 116 0 0 chr1 50259069 50259112 -146936320 + (A)n Simple_repeat Simple_repeat 1 43 0 3 968 45 19 0 0 chr1 50259136 50259188 -146936244 + AT_rich Low_complexity Low_complexity 1 52 0 3 968 425 317 21 0 chr1 50259348 50259493 -146935939 - Lx7 LINE L1 -388 7308 7161 3 968 338 336 109 62 chr1 50259761 50260037 -146935395 - MTEa LTR MaLR -8 371 83 3 968 189 175 0 0 chr1 50260649 50260689 -146934743 + T-rich Low_complexity Low_complexity 1 40 0 3 968 54 49 0 0 chr1 50260756 50260838 -146934594 + AT_rich Low_complexity Low_complexity 1 82 0 3 968 266 266 38 0 chr1 50260864 50260943 -146934489 + Lx9 LINE L1 7356 7437 -207 3 968 906 212 31 62 chr1 50261116 50261407 -146934025 - RLTR15 LTR ERVK -15 344 63 3 968 1023 318 107 61 chr1 50263597 50264139 -146931293 + Lx8 LINE L1 6741 7343 -130 3 968 198 103 0 0 chr1 50264139 50264168 -146931264 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 3 968 1023 318 107 61 chr1 50264168 50264317 -146931115 + Lx8 LINE L1 7344 7464 -9 3 968 302 282 10 0 chr1 50264317 50264420 -146931012 + (TA)n Simple_repeat Simple_repeat 1 104 0 3 968 30 45 0 0 chr1 50264769 50264813 -146930619 + AT_rich Low_complexity Low_complexity 1 44 0 3 968 434 18 18 0 chr1 50265362 50265417 -146930015 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3 968 219 204 36 36 chr1 50265425 50265481 -146929951 - ID SINE ID -167 57 2 3 968 212 271 96 41 chr1 50265867 50265940 -146929492 - B1_Mus1 SINE Alu -33 115 39 3 968 23 68 0 0 chr1 50266192 50266236 -146929196 + AT_rich Low_complexity Low_complexity 1 44 0 3 968 1836 58 0 16 chr1 50266455 50266699 -146928733 - MTA_Mm LTR MaLR 0 396 157 4 968 311 23 47 0 chr1 50266689 50266732 -146928700 - MTA_Mm LTR MaLR -362 45 1 4 968 533 328 65 10 chr1 50267838 50268037 -146927395 + B3A SINE B2 5 212 -4 4 968 292 377 39 17 chr1 50268570 50268748 -146926684 - MER58A DNA MER1_type 0 224 43 4 968 198 378 110 9 chr1 50268893 50269112 -146926320 + L2 LINE L2 2322 2562 -857 4 968 1312 108 16 0 chr1 50269169 50269355 -146926077 + B2_Mm2 SINE B2 3 191 -4 4 968 212 262 0 0 chr1 50270025 50270086 -146925346 + T-rich Low_complexity Low_complexity 1 61 0 4 968 36643 29 4 7 chr1 50270103 50275242 -146920190 + L1Md_A LINE L1 469 5586 -297 4 968 8329 35 2 0 chr1 50275242 50276234 -146919198 + L1Md_A LINE L1 5587 6580 -2 4 968 260 176 7 0 chr1 50276234 50276298 -146919134 - L1Md_A LINE L1 -20 6562 6496 4 968 207 69 0 0 chr1 50276464 50276493 -146918939 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 968 735 244 51 92 chr1 50276726 50276943 -146918489 + ORR1B1 LTR MaLR 1 208 -186 4 968 380 203 0 28 chr1 50276916 50276987 -146918445 + ORR1B1 LTR MaLR 93 161 -168 4 968 270 0 0 0 chr1 50277256 50277286 -146918146 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 968 305 59 39 0 chr1 50277368 50277419 -146918013 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 4 968 405 0 0 0 chr1 50277430 50277475 -146917957 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 968 682 109 17 0 chr1 50279027 50279146 -146916286 + (GA)n Simple_repeat Simple_repeat 2 122 0 4 968 543 236 74 0 chr1 50281322 50281470 -146913962 + Lx6 LINE L1 7299 7457 -3 4 968 4125 98 38 7 chr1 50281496 50282308 -146913124 - Lx3A LINE L1 -885 6096 5272 4 968 5502 135 14 8 chr1 50282309 50283183 -146912249 + Lx3A LINE L1 6096 6974 -7 4 968 2173 132 75 13 chr1 50283785 50284169 -146911263 + Lx3A LINE L1 6567 6974 -7 4 968 24 0 0 0 chr1 50284172 50284196 -146911236 + AT_rich Low_complexity Low_complexity 1 24 0 4 968 186 133 0 0 chr1 50284196 50284226 -146911206 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 4 968 561 30 0 0 chr1 50284477 50284544 -146910888 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 968 15444 80 19 1 chr1 50285040 50287165 -146908267 + L1Md_F2 LINE L1 3423 5586 -297 4 968 7369 76 1 13 chr1 50287165 50288173 -146907259 + L1Md_F2 LINE L1 5587 6582 0 4 968 253 109 18 0 chr1 50288580 50288635 -146906797 + L1_Mus3 LINE L1 6579 6634 -4 4 968 2809 184 36 12 chr1 50288629 50289218 -146906214 + L1_Mur2 LINE L1 4827 5429 -448 4 968 1666 206 63 6 chr1 50289215 50289581 -146905851 + Lx LINE L1 6261 6647 -7 4 968 21 57 0 0 chr1 50289581 50289616 -146905816 + AT_rich Low_complexity Low_complexity 1 35 0 4 968 277 216 0 0 chr1 50289714 50289765 -146905667 - PB1D9 SINE Alu -57 63 13 4 968 297 0 0 0 chr1 50290054 50290087 -146905345 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 968 486 0 0 0 chr1 50290593 50290647 -146904785 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 968 1508 72 22 142 chr1 50290809 50290975 -146904457 - ORR1A2 LTR MaLR -86 241 108 4 968 1142 88 0 0 chr1 50290975 50291122 -146904310 - B1_Mus2 SINE Alu 0 147 1 4 968 1508 72 22 142 chr1 50291122 50291229 -146904203 - ORR1A2 LTR MaLR -220 107 1 4 968 3169 123 14 10 chr1 50291229 50291730 -146903702 - ORR1A2-int LTR MaLR 0 1963 1461 4 968 262 296 43 77 chr1 50291982 50292099 -146903333 - MLT1A0 LTR MaLR -251 114 2 4 968 250 266 19 0 chr1 50292639 50292793 -146902639 + (CATA)n Simple_repeat Simple_repeat 2 158 0 4 968 258 197 16 0 chr1 50292802 50292863 -146902569 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 968 584 309 65 65 chr1 50292920 50293273 -146902159 - RLTR28B LTR ERVL -128 353 1 4 968 3401 100 10 4 chr1 50293293 50293786 -146901646 - L1_Mus3 LINE L1 -1 6637 6142 4 968 4349 119 2 14 chr1 50293786 50294809 -146900623 + L1_Mus3 LINE L1 5141 6143 -495 4 968 234 0 0 0 chr1 50296377 50296403 -146899029 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 968 243 0 0 0 chr1 50296757 50296784 -146898648 + (A)n Simple_repeat Simple_repeat 1 27 0 4 968 351 327 63 51 chr1 50297175 50297333 -146898099 + MT2A LTR ERVL 1 160 -373 4 968 3206 170 80 9 chr1 50297374 50298050 -146897382 - L1_Mur2 LINE L1 -1202 4675 3952 4 968 1186 252 56 157 chr1 50298051 50298587 -146896845 + RMER19C LTR ERVK 2 483 -128 4 968 1970 273 47 102 chr1 50298587 50299439 -146895993 - Lx7 LINE L1 0 7696 6892 4 968 285 306 59 15 chr1 50299552 50299688 -146895744 + Lx9 LINE L1 7324 7465 -179 4 968 2199 212 34 59 chr1 50299706 50300232 -146895200 + RLTR25A LTR ERVK 1 513 -590 4 968 715 142 278 0 chr1 50300165 50300327 -146895105 + ORR1A3-int LTR MaLR 499 705 -1258 4 968 564 188 0 19 chr1 50300257 50300360 -146895072 + MT2B LTR ERVL 25 125 -476 4 968 22314 175 10 31 chr1 50300390 50304829 -146890603 + L1_Mus3 LINE L1 411 4750 -1136 4 968 189 0 0 0 chr1 50304829 50304850 -146890582 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 4 968 22314 148 11 17 chr1 50304850 50306756 -146888676 + L1_Mus3 LINE L1 4751 6638 0 4 968 25 65 0 0 chr1 50306764 50306810 -146888622 + AT_rich Low_complexity Low_complexity 1 46 0 4 968 1748 177 25 14 chr1 50306915 50307270 -146888162 - Lx LINE L1 -6 6648 6290 4 968 1175 301 36 14 chr1 50308036 50308577 -146886855 - MMERGLN-int LTR ERV1 -2323 5233 4765 4 968 1313 369 50 30 chr1 50308908 50310038 -146885394 - MuLV-int LTR ERV1 -3432 4174 3023 4 968 735 283 59 13 chr1 50310315 50310614 -146884818 - MMERGLN-int LTR ERV1 -4625 3153 2733 4 968 360 296 23 23 chr1 50311078 50311222 -146884210 - MMERGLN-int LTR ERV1 -5553 2225 2124 4 968 448 280 45 0 chr1 50311465 50311597 -146883835 - MMERGLN-int LTR ERV1 -6088 1690 1553 4 968 289 310 0 0 chr1 50311605 50311705 -146883727 - MMERGLN-int LTR ERV1 -6197 1255 1156 4 968 233 29 29 0 chr1 50311963 50311997 -146883435 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 968 1065 88 0 0 chr1 50311997 50312134 -146883298 - B1_Mus1 SINE Alu -11 137 1 4 968 320 318 108 72 chr1 50312306 50312557 -146882875 - RMER2 LTR ERV1 0 567 308 4 968 480 71 62 23 chr1 50312794 50312924 -146882508 + T-rich Low_complexity Low_complexity 2 136 0 4 968 236 146 36 0 chr1 50312990 50313045 -146882387 + (TTTAG)n Simple_repeat Simple_repeat 4 60 0 4 968 41 72 0 0 chr1 50313177 50313260 -146882172 + AT_rich Low_complexity Low_complexity 1 83 0 4 968 330 26 0 0 chr1 50314148 50314187 -146881245 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 968 481 370 0 0 chr1 50314199 50314337 -146881095 - B1_Mur2 SINE Alu -7 142 5 4 968 182 118 0 29 chr1 50315095 50315130 -146880302 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 968 31 0 0 0 chr1 50315203 50315234 -146880198 + AT_rich Low_complexity Low_complexity 1 31 0 4 968 25 31 0 0 chr1 50315613 50315645 -146879787 + AT_rich Low_complexity Low_complexity 1 32 0 4 968 2684 174 58 8 chr1 50315671 50316169 -146879263 - RLTR11A LTR ERVK 0 528 6 4 968 560 335 124 15 chr1 50316169 50316442 -146878990 - Lx8 LINE L1 -189 7284 6982 4 968 1260 304 22 5 chr1 50316453 50316853 -146878579 - Lx8 LINE L1 -559 6914 6508 4 968 336 294 11 0 chr1 50316881 50316973 -146878459 - Lx8 LINE L1 -1039 6434 6342 4 968 22 56 0 0 chr1 50317411 50317447 -146877985 + AT_rich Low_complexity Low_complexity 1 36 0 4 968 291 286 4 48 chr1 50317612 50317643 -146877789 + polypurine Low_complexity Low_complexity 1 29 0 4 968 1287 84 0 0 chr1 50317643 50317821 -146877611 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 4 968 256 308 0 58 chr1 50317821 50317944 -146877488 + GA-rich Low_complexity Low_complexity 33 148 0 4 968 22 56 0 0 chr1 50317978 50318014 -146877418 + AT_rich Low_complexity Low_complexity 1 36 0 4 968 8192 36 2 0 chr1 50318154 50319133 -146876299 + L1Md_T LINE L1 5602 6582 0 4 968 6867 216 65 21 chr1 50319239 50321004 -146874428 + Lx7 LINE L1 411 2201 -3679 4 968 567 0 0 0 chr1 50321004 50321067 -146874365 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 968 6867 210 79 17 chr1 50321067 50322052 -146873380 + Lx7 LINE L1 2202 3299 -2581 4 968 578 83 31 0 chr1 50322067 50322163 -146873269 - Lx LINE L1 -5 6649 6551 4 968 4403 128 30 15 chr1 50322187 50322918 -146872514 - Lx LINE L1 -5 6649 5908 4 968 4648 181 17 6 chr1 50322919 50323857 -146871575 - L1_Mm LINE L1 -635 5248 4301 4 968 326 214 70 14 chr1 50323850 50323992 -146871440 + Lx7 LINE L1 3298 3447 -2433 4 968 4168 194 49 41 chr1 50324037 50324681 -146870751 + Lx7 LINE L1 3952 4624 -1256 4 968 273 20 19 58 chr1 50324681 50324733 -146870699 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 4 968 4168 194 49 41 chr1 50324733 50325198 -146870234 + Lx7 LINE L1 4625 5069 -811 4 968 1426 175 0 100 chr1 50325210 50325521 -146869911 + ORR1A4 LTR MaLR 1 280 -49 4 968 815 155 12 61 chr1 50325526 50325685 -146869747 + B2_Mm2 SINE B2 1 153 -42 4 968 405 0 0 0 chr1 50325685 50325730 -146869702 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 4 968 325 104 0 0 chr1 50325746 50325794 -146869638 + ORR1A4 LTR MaLR 274 321 -8 4 968 545 217 102 61 chr1 50325800 50326045 -146869387 + Lx7 LINE L1 5080 5334 -546 4 968 6210 250 33 60 chr1 50326044 50327947 -146867485 + Lx7 LINE L1 5489 7358 -338 4 968 351 113 0 0 chr1 50327947 50328000 -146867432 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 968 6210 264 37 62 chr1 50328000 50328118 -146867314 + Lx7 LINE L1 7359 7471 -225 4 968 826 128 13 13 chr1 50328118 50328268 -146867164 - L1_Mus3 LINE L1 -6 6632 6483 4 968 6210 264 37 62 chr1 50328268 50328315 -146867117 + Lx7 LINE L1 7472 7518 -178 4 968 491 244 8 23 chr1 50328412 50328542 -146866890 + Lx7 LINE L1 7569 7696 0 4 968 21 36 0 0 chr1 50328771 50328799 -146866633 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 182 37 37 0 chr1 50329286 50329313 -146866119 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 968 654 13 0 0 chr1 50330418 50330493 -146864939 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 968 405 0 0 0 chr1 50330493 50330537 -146864895 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 968 391 223 155 0 chr1 50331470 50331573 -146863859 + B1_Mur1 SINE Alu 31 149 0 4 969 181 311 165 35 chr1 50331717 50331887 -146863545 - MIRb SINE MIR -61 207 16 4 969 348 317 24 24 chr1 50332257 50332380 -146863052 + Lx8 LINE L1 7172 7294 -179 4 969 21 82 0 0 chr1 50333202 50333251 -146862181 + AT_rich Low_complexity Low_complexity 1 49 0 4 969 10163 156 22 37 chr1 50333359 50335392 -146860040 + L1_Mur1 LINE L1 3648 5648 -238 4 969 257 167 0 18 chr1 50335706 50335761 -146859671 + T-rich Low_complexity Low_complexity 2 55 0 4 969 33240 73 5 17 chr1 50335882 50339574 -146855858 - L1Md_F2 LINE L1 0 6582 2899 4 969 3680 70 2 27 chr1 50339574 50339627 -146855805 - L1_Mus2 LINE L1 -1 6565 6518 4 969 3697 14 121 0 chr1 50339627 50340067 -146855365 + MT2_Mm LTR ERVL 1 493 0 4 969 3680 70 2 27 chr1 50340067 50340530 -146854902 - L1_Mus2 LINE L1 -49 6517 6062 4 969 33240 75 6 22 chr1 50340530 50340594 -146854838 - L1_Mm LINE L1 -2985 2898 2898 4 969 6158 37 5 19 chr1 50340594 50341372 -146854060 - L1Md_F2 LINE L1 0 6582 5816 4 969 33240 103 11 27 chr1 50341372 50343866 -146851566 - L1Md_F2 LINE L1 -2985 2898 419 4 969 297 0 0 0 chr1 50344400 50344433 -146850999 + (A)n Simple_repeat Simple_repeat 1 33 0 4 969 504 0 0 0 chr1 50344660 50344716 -146850716 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 969 573 52 0 0 chr1 50344716 50344792 -146850640 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 969 2918 32 3 0 chr1 50345003 50345348 -146850084 + ORR1A0 LTR MaLR 1 346 0 4 969 209 125 25 0 chr1 50345645 50345685 -146849747 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 5 969 667 134 0 0 chr1 50345985 50346082 -146849350 + B1_Mus1 SINE Alu 29 125 -23 5 969 261 0 0 0 chr1 50346134 50346163 -146849269 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 969 396 0 0 0 chr1 50346163 50346206 -146849226 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 969 200 182 0 0 chr1 50347090 50347123 -146848309 + CT-rich Low_complexity Low_complexity 3 35 0 5 969 660 317 48 10 chr1 50347125 50347415 -146848017 - L1Md_T LINE L1 -389 7307 7007 5 969 810 139 0 0 chr1 50347415 50347552 -146847880 + (TA)n Simple_repeat Simple_repeat 1 137 0 5 969 8534 113 22 26 chr1 50347552 50348959 -146846473 - L1Md_T LINE L1 -728 6968 5587 5 969 2729 31 0 0 chr1 50348982 50349304 -146846128 + L1_Mm LINE L1 5258 5579 -304 5 969 1980 277 38 75 chr1 50349303 50350062 -146845370 - Lx7 LINE L1 -1163 6533 5796 5 969 314 135 19 0 chr1 50350062 50350114 -146845318 - B2_Mm1t SINE B2 -140 53 1 5 969 1980 277 38 75 chr1 50350114 50350654 -146844778 - Lx7 LINE L1 -1163 5795 5269 5 969 430 335 132 16 chr1 50350830 50351088 -146844344 + MTD LTR MaLR 19 306 -113 5 969 231 299 30 52 chr1 50351888 50352015 -146843417 - RMER12 LTR ERVK -472 850 727 5 969 264 77 0 0 chr1 50352015 50352054 -146843378 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 969 27 0 0 0 chr1 50352376 50352403 -146843029 + AT_rich Low_complexity Low_complexity 1 27 0 5 969 477 0 0 0 chr1 50353369 50353422 -146842010 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 969 315 85 0 0 chr1 50353427 50353474 -146841958 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 969 1884 154 49 22 chr1 50353618 50353984 -146841448 + Lx3C LINE L1 5972 6347 -629 5 969 40 59 0 0 chr1 50353984 50354052 -146841380 + AT_rich Low_complexity Low_complexity 1 68 0 5 969 2876 143 160 0 chr1 50354274 50354819 -146840613 + Lx3C LINE L1 6343 6974 -2 5 969 22 56 0 0 chr1 50354825 50354861 -146840571 + AT_rich Low_complexity Low_complexity 1 36 0 5 969 241 263 130 50 chr1 50358186 50358286 -146837146 - B3 SINE B2 -13 203 96 5 969 285 29 0 0 chr1 50358485 50358519 -146836913 + (TATG)n Simple_repeat Simple_repeat 2 35 0 5 969 393 261 44 18 chr1 50358583 50358696 -146836736 - B1F SINE Alu 0 149 34 5 969 1125 95 0 0 chr1 50359030 50359177 -146836255 + B1_Mus1 SINE Alu 2 148 0 5 969 248 52 33 49 chr1 50359179 50359240 -146836192 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 5 969 382 309 31 36 chr1 50359519 50359714 -146835718 - B3A SINE B2 0 198 5 5 969 540 316 89 19 chr1 50360523 50360794 -146834638 - B4 SINE B4 -2 290 1 5 969 686 178 225 0 chr1 50360945 50361114 -146834318 + Lx2 LINE L1 6784 6990 -7 5 969 842 76 8 0 chr1 50361117 50361236 -146834196 + (GAAAA)n Simple_repeat Simple_repeat 4 123 0 5 969 207 0 0 0 chr1 50361291 50361314 -146834118 + (T)n Simple_repeat Simple_repeat 1 23 0 5 969 3302 176 62 16 chr1 50363358 50364033 -146831399 + L1_Mus1 LINE L1 415 1120 -5496 5 969 995 103 7 0 chr1 50364033 50364178 -146831254 + B1_Mm SINE Alu 1 146 -1 5 969 29192 114 11 5 chr1 50364178 50369706 -146825726 + L1_Mus1 LINE L1 1106 6565 -2 5 969 322 345 0 0 chr1 50369880 50369996 -146825436 - Tigger5 DNA MER2_type 0 2406 2291 5 969 24 32 0 0 chr1 50371640 50371671 -146823761 + AT_rich Low_complexity Low_complexity 1 31 0 5 969 254 320 54 22 chr1 50371681 50371866 -146823566 + Lx8 LINE L1 7281 7471 -2 5 969 5968 127 32 16 chr1 50372105 50372875 -146822557 - Lx LINE L1 -7 6647 5875 5 969 345 24 0 0 chr1 50372875 50372917 -146822515 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 5 969 5968 127 32 16 chr1 50372917 50373109 -146822323 - Lx LINE L1 -780 5874 5671 5 969 2452 124 0 0 chr1 50373111 50373466 -146821966 + Lx LINE L1 5360 5714 -169 5 969 246 356 58 29 chr1 50373862 50373966 -146821466 + B3A SINE B2 70 176 -22 5 969 893 200 58 10 chr1 50373983 50374190 -146821242 - Lx9 LINE L1 -652 6992 6776 5 969 607 224 45 19 chr1 50374185 50374340 -146821092 + Lx9 LINE L1 6995 7153 -491 5 969 234 306 50 30 chr1 50374377 50374478 -146820954 + L1MB7 LINE L1 6003 6105 -79 5 969 519 17 0 0 chr1 50377209 50377269 -146818163 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 969 606 28 0 0 chr1 50377269 50377340 -146818092 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 969 271 275 0 130 chr1 50377569 50377661 -146817771 + RSINE1 SINE B4 86 165 0 5 969 24 32 0 0 chr1 50377991 50378022 -146817410 + AT_rich Low_complexity Low_complexity 1 31 0 5 969 23 0 0 0 chr1 50378491 50378514 -146816918 + AT_rich Low_complexity Low_complexity 1 23 0 5 969 942 63 0 0 chr1 50378690 50378816 -146816616 + (TC)n Simple_repeat Simple_repeat 1 126 0 5 969 598 364 11 7 chr1 50378908 50379193 -146816239 - Lx8 LINE L1 -375 7098 6813 5 969 288 366 56 16 chr1 50379211 50379461 -146815971 + Lx8 LINE L1 6936 7195 -278 5 969 21 57 0 0 chr1 50379668 50379703 -146815729 + AT_rich Low_complexity Low_complexity 1 35 0 5 969 21 89 0 0 chr1 50380481 50380537 -146814895 + AT_rich Low_complexity Low_complexity 1 56 0 5 969 2336 173 7 0 chr1 50381681 50382103 -146813329 - L1_Mur2 LINE L1 -402 5475 5051 5 969 5951 135 63 22 chr1 50382102 50383206 -146812226 + Lx LINE L1 5506 6650 -4 5 969 12998 146 17 25 chr1 50383272 50384839 -146810593 + L1VL4 LINE L1 148 1710 -1849 5 969 5625 46 4 4 chr1 50384839 50385541 -146809891 - L1Md_F2 LINE L1 -1 6581 5880 5 969 12998 107 16 20 chr1 50385541 50386620 -146808812 + L1VL4 LINE L1 1711 2786 -773 5 969 189 0 0 0 chr1 50386620 50386641 -146808791 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 969 12998 107 16 20 chr1 50386641 50386820 -146808612 + L1VL4 LINE L1 2787 2964 -595 5 969 35395 35 0 0 chr1 50386815 50392242 -146803190 + L1Md_T LINE L1 66 5589 -297 5 969 8983 5 0 0 chr1 50392242 50393238 -146802194 + L1Md_T LINE L1 5590 6585 0 5 969 12115 160 41 43 chr1 50393244 50395972 -146799460 + L1_Mus4 LINE L1 3303 5996 -640 5 969 4145 186 31 6 chr1 50395969 50397002 -146798430 - Lx LINE L1 -315 6339 5284 5 969 189 0 0 0 chr1 50397002 50397023 -146798409 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 969 4145 215 39 16 chr1 50397023 50397423 -146798009 - Lx LINE L1 -603 5283 4871 5 969 717 302 127 55 chr1 50397424 50397771 -146797661 - MLT1K LTR MaLR -55 540 169 5 969 2136 152 67 27 chr1 50397912 50398358 -146797074 - Lx LINE L1 -990 4887 4424 5 969 597 243 80 50 chr1 50398448 50398686 -146796746 - RLTR20B3 LTR ERVK -318 259 15 5 969 3995 198 84 19 chr1 50398687 50399653 -146795779 - Lx LINE L1 -1452 4425 3397 5 969 4161 210 31 48 chr1 50399664 50400797 -146794635 - Lx LINE L1 -2856 3030 1917 5 969 1934 214 90 42 chr1 50400834 50401485 -146793947 + ORR1A3-int LTR MaLR 1 717 -1246 5 969 1083 244 53 61 chr1 50401415 50401677 -146793755 + MT2B LTR ERVL 34 293 -308 5 969 4791 196 81 42 chr1 50401630 50402943 -146792489 + ORR1A3-int LTR MaLR 718 1770 -193 5 969 1466 193 15 56 chr1 50402943 50403283 -146792149 + ORR1A3 LTR MaLR 1 326 0 5 969 593 343 34 0 chr1 50404026 50404230 -146791202 + B3 SINE B2 6 216 0 5 969 996 347 9 3 chr1 50406266 50406587 -146788845 - MTE2b LTR MaLR -50 329 7 5 969 1043 237 47 0 chr1 50406684 50406937 -146788495 - Lx9 LINE L1 -435 7209 6945 5 969 343 232 20 29 chr1 50406932 50407034 -146788398 + Lx9 LINE L1 7316 7416 -228 5 969 428 72 14 0 chr1 50407034 50407103 -146788329 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 969 180 0 0 0 chr1 50407103 50407123 -146788309 + (ATTAG)n Simple_repeat Simple_repeat 2 21 0 5 969 528 235 0 23 chr1 50407129 50407303 -146788129 + Lx9 LINE L1 7467 7636 -8 5 969 269 223 57 8 chr1 50407347 50407469 -146787963 + (TA)n Simple_repeat Simple_repeat 2 129 0 5 969 258 338 15 0 chr1 50407478 50407546 -146787886 - RSINE1 SINE B4 -61 104 36 5 969 573 224 28 7 chr1 50407606 50407750 -146787682 + B1_Mur1 SINE Alu 1 147 -2 5 969 183 114 0 0 chr1 50407913 50407948 -146787484 + (T)n Simple_repeat Simple_repeat 1 35 0 5 969 537 235 36 96 chr1 50408732 50409010 -146786422 - RLTR25A LTR ERVK -11 1017 689 5 969 3217 83 11 2 chr1 50409010 50409455 -146785977 + L1_Mus1 LINE L1 6119 6567 0 5 969 339 328 7 15 chr1 50409698 50409834 -146785598 - Lx7 LINE L1 -393 7303 7169 5 969 250 336 67 9 chr1 50410071 50410296 -146785136 + L1MDa LINE L1 1802 2039 -4594 5 969 862 294 85 51 chr1 50410800 50411600 -146783832 + L1M2 LINE L1 3149 3975 -2168 5 969 340 294 108 70 chr1 50411887 50412414 -146783018 + L1M2 LINE L1 4693 5239 -904 5 969 459 0 0 0 chr1 50412429 50412480 -146782952 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 969 185 0 40 0 chr1 50412489 50412514 -146782918 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 969 1055 88 0 7 chr1 50412526 50412674 -146782758 - B1_Mus1 SINE Alu -1 147 1 5 969 401 297 88 12 chr1 50412686 50413017 -146782415 + L1P5 LINE L1 5255 5610 -546 5 969 367 164 0 16 chr1 50413027 50413089 -146782343 - tRNA-Asn-AAC tRNA tRNA 0 77 17 5 969 2325 140 120 25 chr1 50413088 50413609 -146781823 + RLTR26 LTR ERVK 5 642 0 5 969 1570 214 8 17 chr1 50413621 50413972 -146781460 + Lx2 LINE L1 5925 6272 -725 5 969 912 115 51 0 chr1 50414354 50414510 -146780922 + Lx2 LINE L1 6834 6997 0 5 969 23 0 0 0 chr1 50414538 50414561 -146780871 + AT_rich Low_complexity Low_complexity 1 23 0 5 969 1213 212 138 26 chr1 50414770 50415075 -146780357 + MTC LTR MaLR 83 421 0 5 969 1090 71 0 0 chr1 50417020 50417160 -146778272 + B1_Mm SINE Alu 2 141 -6 5 969 369 0 0 0 chr1 50417162 50417203 -146778229 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 5 969 253 333 0 0 chr1 50417278 50417344 -146778088 - ID4_ SINE ID 0 83 18 5 969 607 304 44 68 chr1 50418059 50418547 -146776885 + L1MD3 LINE L1 6692 7167 -618 5 969 1673 134 7 11 chr1 50418547 50418834 -146776598 + Lx LINE L1 6365 6650 -4 5 969 529 304 121 52 chr1 50418834 50419336 -146776096 + L1MD3 LINE L1 7168 7751 -34 5 969 2954 134 17 8 chr1 50419788 50420269 -146775163 + Lx LINE L1 6167 6651 -3 5 969 466 234 51 7 chr1 50420347 50420485 -146774947 + L1MC2 LINE L1 6057 6200 -144 5 969 2246 161 77 63 chr1 50420540 50420625 -146774807 + Lx9 LINE L1 7109 7185 -459 5 969 216 0 0 0 chr1 50420625 50420649 -146774783 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 969 2246 161 77 63 chr1 50420649 50421085 -146774347 + Lx9 LINE L1 7186 7637 -7 5 969 271 100 0 0 chr1 50421100 50421140 -146774292 + B1_Mus2 SINE Alu 108 147 0 5 969 22 0 0 0 chr1 50421140 50421162 -146774270 + AT_rich Low_complexity Low_complexity 1 22 0 5 969 793 81 9 0 chr1 50421385 50421496 -146773936 + B1_Mm SINE Alu 26 137 -10 5 969 252 0 0 0 chr1 50421566 50421594 -146773838 + (A)n Simple_repeat Simple_repeat 1 28 0 5 969 180 0 0 0 chr1 50421592 50421612 -146773820 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 969 8230 126 37 12 chr1 50422691 50424016 -146771416 + Lx2 LINE L1 5639 6996 -1 6 969 21 0 0 0 chr1 50425079 50425100 -146770332 + AT_rich Low_complexity Low_complexity 1 21 0 6 969 3946 49 12 14 chr1 50425113 50425607 -146769825 - MT2_Mm LTR ERVL 0 493 1 6 969 308 26 0 0 chr1 50425607 50425645 -146769787 - MERVL-int LTR ERVL 0 5485 5448 6 969 350 139 26 53 chr1 50425645 50425721 -146769711 - ORR1A3-int LTR MaLR -1323 640 567 6 969 44795 37 10 5 chr1 50425721 50426321 -146769111 - MERVL-int LTR ERVL -114 5371 4774 6 969 4043 50 0 0 chr1 50426321 50426803 -146768629 - LTRIS_Mm LTR ERV1 0 482 1 6 969 44795 37 10 5 chr1 50426803 50428083 -146767349 - MERVL-int LTR ERVL -712 4773 3499 6 969 2535 78 49 6 chr1 50428083 50428433 -146766999 - RLTR10B2 LTR ERVK 0 365 1 6 969 44795 37 10 5 chr1 50428433 50431896 -146763536 - MERVL-int LTR ERVL -1987 3498 1 6 969 1014 47 0 0 chr1 50431896 50432024 -146763408 - MT2_Mm LTR ERVL 0 493 366 6 969 7779 160 51 6 chr1 50432099 50433970 -146761462 - Lx4A LINE L1 0 7058 5087 6 969 664 301 26 48 chr1 50434393 50434620 -146760812 + ID_B1 SINE B4 1 222 -2 6 969 352 265 97 66 chr1 50435261 50435487 -146759945 + L1MD LINE L1 3050 3282 -2864 6 969 30 27 0 0 chr1 50435611 50435648 -146759784 + AT_rich Low_complexity Low_complexity 1 37 0 6 969 891 237 17 124 chr1 50435660 50435911 -146759521 - Lx7 LINE L1 0 7696 7476 6 969 189 0 0 0 chr1 50435911 50435932 -146759500 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 969 891 237 17 124 chr1 50435932 50436036 -146759396 - Lx7 LINE L1 -221 7475 7379 6 969 1789 242 2 28 chr1 50436035 50436435 -146758997 - Lx7 LINE L1 -1218 6478 6089 6 969 21 0 0 0 chr1 50436778 50436799 -146758633 + AT_rich Low_complexity Low_complexity 1 21 0 6 969 22 56 0 0 chr1 50436931 50436967 -146758465 + AT_rich Low_complexity Low_complexity 1 36 0 6 969 21 0 0 0 chr1 50437258 50437279 -146758153 + AT_rich Low_complexity Low_complexity 1 21 0 6 969 667 313 0 14 chr1 50437279 50437496 -146757936 - B3 SINE B2 0 216 3 6 969 458 302 92 68 chr1 50437509 50437715 -146757717 - ID_B1 SINE B4 -13 211 1 6 969 28 29 0 0 chr1 50437972 50438007 -146757425 + AT_rich Low_complexity Low_complexity 1 35 0 6 969 1849 102 31 22 chr1 50439113 50439432 -146756000 + RLTRETN_Mm LTR ERVK 1 322 0 6 969 14620 175 27 14 chr1 50439432 50444403 -146751029 + ETnERV-int LTR ERVK 1 5697 -1709 6 969 278 19 35 53 chr1 50444726 50444783 -146750649 + (CAAAAA)n Simple_repeat Simple_repeat 3 58 0 6 969 279 292 43 17 chr1 50444783 50444898 -146750534 + MLT1B LTR MaLR 104 221 -169 6 969 6642 62 17 10 chr1 50445254 50446124 -146749308 - L1_Mus1 LINE L1 -1 6566 5691 6 969 24 0 0 0 chr1 50446181 50446205 -146749227 + AT_rich Low_complexity Low_complexity 1 24 0 6 969 363 106 0 0 chr1 50447452 50447518 -146747914 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 969 2359 170 24 5 chr1 50448350 50448776 -146746656 + RMER6-int LTR ERVK 2742 3175 -2 6 969 1061 178 47 5 chr1 50448784 50448976 -146746456 + RMER6D LTR ERVK 15 214 -506 6 969 7447 166 23 6 chr1 50449252 50450575 -146744857 - Lx2 LINE L1 -1 6996 5652 6 969 696 106 0 46 chr1 50450572 50450681 -146744751 - Lx2 LINE L1 -377 5506 5403 6 969 2316 200 67 151 chr1 50450676 50450944 -146744488 - L1_Mur1 LINE L1 -2402 3484 3277 6 969 1176 48 7 0 chr1 50450944 50451090 -146744342 - B1_Mm SINE Alu 0 147 1 6 969 2316 200 67 151 chr1 50451090 50451838 -146743594 - L1_Mur1 LINE L1 -2610 3276 2554 6 969 448 186 193 0 chr1 50451833 50451973 -146743459 - L1_Mur1 LINE L1 -6024 960 794 6 969 214 29 57 0 chr1 50452094 50452129 -146743303 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 969 203 277 0 0 chr1 50452391 50452438 -146742994 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 6 969 454 263 0 21 chr1 50453055 50453152 -146742280 - RLTR20B3 LTR ERVK -36 541 447 6 969 458 254 49 7 chr1 50453152 50453295 -146742137 + Lx7 LINE L1 7548 7696 0 6 969 342 0 0 0 chr1 50454126 50454164 -146741268 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 969 1049 181 24 19 chr1 50455230 50455469 -146739963 + Lx4B LINE L1 5785 6026 -955 6 969 908 132 7 0 chr1 50455468 50455620 -146739812 - L1_Mur1 LINE L1 -2189 3697 3545 6 969 772 180 0 0 chr1 50455625 50455764 -146739668 - Lx4B LINE L1 -1295 5763 5625 6 969 522 96 32 11 chr1 50456037 50456132 -146739300 + (GAAA)n Simple_repeat Simple_repeat 2 98 0 6 969 365 22 0 0 chr1 50456259 50456304 -146739128 - Lx2 LINE L1 -797 6200 6156 6 969 7292 162 50 26 chr1 50456308 50457042 -146738390 + Lx2 LINE L1 5512 6295 -702 6 969 1609 170 100 26 chr1 50457042 50457423 -146738009 + RLTR9E LTR ERVK 1 409 0 6 969 7292 159 46 29 chr1 50457423 50458138 -146737294 + Lx2 LINE L1 6296 6997 0 6 969 3160 148 21 5 chr1 50458193 50458772 -146736660 + Lx3B LINE L1 3470 4057 -1829 6 969 4854 150 11 0 chr1 50458802 50459503 -146735929 + ETnERV2-int LTR ERVK 6494 7202 -204 6 969 10654 138 14 19 chr1 50459881 50462010 -146733422 + Lx3B LINE L1 4050 6168 -805 6 969 3994 112 31 21 chr1 50462012 50462684 -146732748 - RMER17D LTR ERVK -185 704 26 6 121 4752 138 32 6 chr1 50462698 50463474 -146731958 + Lx3B LINE L1 6173 6968 -5 6 970 413 81 48 0 chr1 50463490 50463552 -146731880 + Lx2B LINE L1 5282 5346 -531 6 970 519 17 0 0 chr1 50464336 50464396 -146731036 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 970 7370 153 62 11 chr1 50464716 50465117 -146730315 + Lx2B LINE L1 5591 6015 -985 6 970 1081 70 7 7 chr1 50465117 50465260 -146730172 + B1_Mus1 SINE Alu 1 143 -5 6 970 7370 153 62 11 chr1 50465260 50465973 -146729459 + Lx2B LINE L1 6016 6750 -250 6 970 561 52 0 0 chr1 50465973 50466050 -146729382 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 970 7370 153 62 11 chr1 50466050 50466267 -146729165 + Lx2B LINE L1 6751 6989 -11 6 970 210 193 0 0 chr1 50466418 50466475 -146728957 + GA-rich Low_complexity Low_complexity 2 58 0 6 970 288 0 0 0 chr1 50466565 50466597 -146728835 + (A)n Simple_repeat Simple_repeat 1 32 0 6 970 898 90 7 7 chr1 50466950 50467095 -146728337 - L1_Mus4 LINE L1 -7 6629 6485 6 970 21 0 0 0 chr1 50468242 50468263 -146727169 + AT_rich Low_complexity Low_complexity 1 21 0 6 970 7521 184 24 19 chr1 50469022 50470643 -146724789 - Lx2 LINE L1 0 6997 5462 6 970 1133 75 7 0 chr1 50470643 50470789 -146724643 - B1_Mus1 SINE Alu -1 147 1 6 970 6209 210 22 80 chr1 50470789 50471958 -146723474 - Lx2 LINE L1 -422 5461 4280 6 970 225 0 0 0 chr1 50471959 50471984 -146723448 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 6 970 39414 21 3 6 chr1 50472006 50478214 -146717218 - L1Md_T LINE L1 -2 6580 398 6 970 580 172 8 16 chr1 50478215 50478339 -146717093 - L1_Mur2 LINE L1 -1600 4277 4155 6 970 508 321 86 56 chr1 50478595 50478923 -146716509 - L1MB3 LINE L1 -85 6098 5760 6 970 2716 36 24 0 chr1 50478923 50479257 -146716175 - L1Md_T LINE L1 0 6582 6241 6 970 508 321 86 56 chr1 50479257 50479499 -146715933 - L1MB3 LINE L1 -424 5759 5511 6 970 1166 67 0 32 chr1 50479597 50479783 -146715649 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 970 1042 90 0 0 chr1 50479783 50479917 -146715515 - B1_Mus2 SINE Alu -11 136 3 6 970 260 371 0 0 chr1 50480176 50480327 -146715105 - L1M4c LINE L1 -4934 1450 1300 6 970 211 318 0 0 chr1 50481142 50481208 -146714224 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 970 659 293 94 50 chr1 50481255 50481711 -146713721 - L1M2 LINE L1 -1225 4918 4443 6 970 22 35 0 0 chr1 50481834 50481863 -146713569 + AT_rich Low_complexity Low_complexity 1 29 0 6 970 438 36 0 0 chr1 50483201 50483257 -146712175 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 970 486 0 0 0 chr1 50483389 50483443 -146711989 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 970 231 36 0 0 chr1 50483559 50483587 -146711845 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 6 970 922 132 0 0 chr1 50483594 50483723 -146711709 - B1_Mus1 SINE Alu -17 131 3 6 970 1504 202 30 38 chr1 50484023 50484393 -146711039 - RMER6C LTR ERVK 0 690 324 6 970 2280 165 30 2 chr1 50484413 50484839 -146710593 - Lx2 LINE L1 -2 6995 6558 6 970 1538 197 3 7 chr1 50484845 50485141 -146710291 - MYSERV16_I-int LTR ERVK -2027 299 5 6 970 542 177 24 16 chr1 50485454 50485580 -146709852 - Lx3C LINE L1 -3 6970 6844 6 970 5302 141 44 12 chr1 50485581 50486473 -146708959 - Lx3C LINE L1 -379 6597 5678 6 970 5354 165 7 11 chr1 50486473 50487486 -146707946 + L1_Mur1 LINE L1 3724 4732 -1154 6 970 1975 234 29 14 chr1 50487509 50488029 -146707403 - RLTR11A LTR ERVK 0 528 1 6 970 317 68 54 14 chr1 50488142 50488216 -146707216 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 6 970 276 169 31 0 chr1 50488229 50488294 -146707138 + (GTTTG)n Simple_repeat Simple_repeat 3 69 0 6 970 498 33 0 0 chr1 50488579 50488639 -146706793 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 970 841 71 0 0 chr1 50489217 50489330 -146706102 - B1_Mus1 SINE Alu -5 143 31 6 970 383 311 72 0 chr1 50489725 50489905 -146705527 + L1MD LINE L1 3757 3949 -2197 6 970 229 276 102 8 chr1 50489902 50490030 -146705402 + L1M2 LINE L1 3979 4118 -2022 6 970 303 355 105 2 chr1 50490383 50490820 -146704612 + L1M2 LINE L1 4544 5025 -1118 6 970 1027 95 0 31 chr1 50491064 50491086 -146704346 + L1Md_F2 LINE L1 5862 5880 -702 6 970 4252 73 5 22 chr1 50491086 50491677 -146703755 - L1Md_F2 LINE L1 -2 6580 6000 6 970 1027 95 0 31 chr1 50491677 50491817 -146703615 + L1Md_F2 LINE L1 5881 6019 -563 6 970 303 314 126 23 chr1 50492003 50492218 -146703214 + L1M2 LINE L1 5560 5796 -504 6 970 6660 68 3 7 chr1 50492233 50493113 -146702319 + L1Md_F2 LINE L1 5703 6579 -3 6 970 183 80 0 0 chr1 50493196 50493221 -146702211 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 6 970 262 224 0 15 chr1 50493273 50493341 -146702091 - Lx7 LINE L1 -17 7679 7613 6 970 34 0 0 0 chr1 50493708 50493742 -146701690 + AT_rich Low_complexity Low_complexity 1 34 0 6 970 279 0 0 0 chr1 50493760 50493791 -146701641 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 970 34319 81 3 9 chr1 50493794 50499762 -146695670 - L1Md_F2 LINE L1 -1 6581 654 6 970 233 275 37 23 chr1 50499778 50499937 -146695495 + L1M LINE L1 5255 5415 -882 6 970 1758 220 52 5 chr1 50500000 50500383 -146695049 - Lx5 LINE L1 -235 6815 6415 1 970 672 270 0 7 chr1 50500367 50500520 -146694912 + Lx5 LINE L1 6761 6912 -138 1 970 3730 49 6 6 chr1 50500687 50501157 -146694275 - L1Md_F2 LINE L1 -1 6581 6112 2 970 485 360 49 0 chr1 50501557 50501760 -146693672 - B3 SINE B2 -1 215 3 3 970 268 284 101 19 chr1 50501847 50502005 -146693427 + L1MD2 LINE L1 5767 5937 -422 4 970 3711 191 50 8 chr1 50502030 50502757 -146692675 - Lx4A LINE L1 -2 7056 6300 5 970 2714 209 32 9 chr1 50502760 50503292 -146692140 - RLTR26 LTR ERVK -98 544 1 6 970 1203 212 45 4 chr1 50503307 50503549 -146691883 + RMER19C LTR ERVK 360 611 0 7 970 396 253 11 0 chr1 50503549 50503636 -146691796 + MurERV4_19-int LTR ERVK 1 88 -5692 7 970 2358 177 32 2 chr1 50503632 50504074 -146691358 + MurERV4_19-int LTR ERVK 1948 2402 -3378 7 970 16490 155 42 24 chr1 50504078 50507178 -146688254 + MurERV4_19-int LTR ERVK 2246 5399 -381 8 970 2685 151 138 2 chr1 50507178 50507763 -146687669 + Lx3C LINE L1 6312 6976 0 9 970 362 143 0 13 chr1 50507877 50507955 -146687477 + CT-rich Low_complexity Low_complexity 1 77 0 1 970 760 185 0 29 chr1 50507966 50508105 -146687327 - B1_Mus2 SINE Alu 0 147 13 1 970 234 0 0 0 chr1 50508150 50508176 -146687256 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 970 885 119 50 0 chr1 50508483 50508642 -146686790 - L1_Mus4 LINE L1 0 6636 6470 1 970 25131 161 16 30 chr1 50508642 50514214 -146681218 - L1_Mus3 LINE L1 -721 5917 503 1 970 550 312 13 6 chr1 50514244 50514402 -146681030 - B3 SINE B2 -57 159 1 1 970 22 35 0 0 chr1 50515149 50515178 -146680254 + AT_rich Low_complexity Low_complexity 1 29 0 1 970 669 25 0 0 chr1 50515228 50515307 -146680125 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 970 885 194 68 5 chr1 50515666 50515858 -146679574 + Lx9 LINE L1 6763 6966 -678 1 970 1148 213 15 3 chr1 50516107 50516348 -146679084 + RMER19B LTR ERVK 1 274 -628 1 970 1545 203 210 5 chr1 50516343 50516715 -146678717 + RMER19B LTR ERVK 450 897 -5 1 970 4195 19 0 0 chr1 50516907 50517390 -146678042 - L1Md_T LINE L1 -697 5186 4704 2 970 3410 15 0 0 chr1 50517385 50517775 -146677657 + L1Md_T LINE L1 5197 5586 -297 2 970 8931 5 1 0 chr1 50517776 50518770 -146676662 + L1Md_T LINE L1 5588 6582 0 2 970 499 356 26 5 chr1 50518824 50519019 -146676413 - MTE2b LTR MaLR -112 267 69 2 970 363 121 0 0 chr1 50519224 50519282 -146676150 + (T)n Simple_repeat Simple_repeat 1 58 0 2 970 5095 70 0 14 chr1 50519455 50520124 -146675308 + L1_Mus2 LINE L1 5907 6566 0 2 970 306 337 0 12 chr1 50520946 50521030 -146674402 + ORR1D2 LTR MaLR 1 83 -276 2 970 297 192 68 119 chr1 50521031 50521149 -146674283 + RLTR25B LTR ERVK 398 509 -519 2 970 808 90 39 39 chr1 50521065 50521192 -146674240 + B1_Mur4 SINE Alu 24 150 0 2 970 204 167 0 0 chr1 50521192 50521240 -146674192 + A-rich Low_complexity Low_complexity 2 49 0 2 970 461 281 34 64 chr1 50521240 50521437 -146673995 + ORR1D2 LTR MaLR 153 370 -9 2 970 338 361 34 30 chr1 50521446 50521680 -146673752 + L1MA4A LINE L1 2407 2641 -3502 2 970 288 364 56 8 chr1 50521724 50521976 -146673456 + L1MA4A LINE L1 2647 2910 -3233 2 970 459 299 23 16 chr1 50521983 50522112 -146673320 + B3A SINE B2 5 134 -64 2 970 1104 330 87 65 chr1 50522292 50522969 -146672463 + Lx8 LINE L1 6655 7346 -127 3 970 24 53 0 0 chr1 50523049 50523087 -146672345 + AT_rich Low_complexity Low_complexity 1 38 0 3 970 551 350 40 62 chr1 50523190 50523562 -146671870 + MTD LTR MaLR 42 405 -14 3 970 1627 89 0 69 chr1 50523581 50523825 -146671607 + L1Md_F2 LINE L1 6325 6559 -23 3 970 3467 23 2 0 chr1 50523825 50524220 -146671212 - MTA_Mm LTR MaLR 0 396 1 3 970 1627 89 0 69 chr1 50524220 50524252 -146671180 + L1Md_F2 LINE L1 6560 6582 0 3 970 712 323 81 38 chr1 50524314 50525413 -146670019 + L1MA4A LINE L1 4752 5900 -403 2 970 4719 240 54 22 chr1 50525872 50527051 -146668381 + Lx5 LINE L1 5823 7039 -11 3 970 1664 158 28 22 chr1 50527051 50527063 -146668369 - RMER6B LTR ERVK -135 326 315 3 970 306 0 0 0 chr1 50527063 50527097 -146668335 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 970 1664 158 28 22 chr1 50527097 50527408 -146668024 - RMER6B LTR ERVK -147 314 1 3 970 526 165 0 37 chr1 50527414 50527521 -146667911 - MYSERV6-int LTR ERVK -1197 7762 7660 3 970 1748 165 15 30 chr1 50527536 50527867 -146667565 - MYSERV6-int LTR ERVK -1355 7604 7279 3 970 579 241 64 24 chr1 50528274 50528478 -146666954 - RLTR16 LTR ERVK -288 217 26 3 970 900 139 26 0 chr1 50528478 50528629 -146666803 - MYSERV6-int LTR ERVK -1689 7270 7116 3 970 4229 145 20 4 chr1 50528630 50528805 -146666627 - L1_Mur2 LINE L1 -975 4902 4730 4 970 229 26 0 50 chr1 50528805 50528845 -146666587 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 970 4229 145 20 4 chr1 50528845 50529409 -146666023 - L1_Mur2 LINE L1 -1148 4729 4152 4 970 4433 190 40 21 chr1 50529443 50530411 -146665021 - MYSERV6-int LTR ERVK -2671 6288 5302 3 970 8149 150 39 7 chr1 50530411 50531933 -146663499 + L1_Mur1 LINE L1 3333 4903 -983 4 970 30 27 0 0 chr1 50531962 50531999 -146663433 + AT_rich Low_complexity Low_complexity 1 37 0 4 970 207 0 0 0 chr1 50532415 50532438 -146662994 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 970 674 204 0 28 chr1 50532445 50532586 -146662846 + RLTR11A LTR ERVK 392 528 0 4 970 22 80 0 0 chr1 50533018 50533068 -146662364 + AT_rich Low_complexity Low_complexity 1 50 0 4 970 362 288 101 8 chr1 50533227 50533346 -146662086 + B1_Mus1 SINE Alu 19 148 0 4 970 3139 206 16 32 chr1 50533522 50534249 -146661183 + MYSERV16_I-int LTR ERVK 1 1353 -1489 4 970 5412 65 35 19 chr1 50534569 50535302 -146660130 - L1Md_F2 LINE L1 -12 6570 5826 4 970 274 258 15 0 chr1 50535443 50535509 -146659923 - MYSERV6-int LTR ERVK -8836 123 57 3 970 2257 137 3 3 chr1 50536008 50536381 -146659051 - MYSERV6-int LTR ERVK -7660 1299 927 5 970 261 93 163 0 chr1 50536390 50536433 -146658999 + tRNA-Lys-AAG tRNA tRNA 27 76 0 5 970 1154 246 114 41 chr1 50536437 50536849 -146658583 - RLTR31A_Mm LTR ERVK -2 582 141 5 970 3503 194 33 25 chr1 50536849 50537252 -146658180 - Lx5 LINE L1 -708 6342 5932 5 970 6087 121 55 3 chr1 50537252 50538187 -146657245 - RLTR13C1 LTR ERVK 0 983 1 5 970 3503 194 33 25 chr1 50538187 50538514 -146656918 - Lx5 LINE L1 -1119 5931 5606 5 970 1543 220 59 9 chr1 50538513 50538834 -146656598 + Lx5 LINE L1 6664 7000 -50 5 970 2669 48 3 0 chr1 50539633 50539970 -146655462 - ORR1A1 LTR MaLR -8 338 1 5 970 12429 85 23 7 chr1 50539970 50541733 -146653699 - ORR1A1-int LTR MaLR 0 1792 1 5 970 3575 47 68 0 chr1 50541733 50542177 -146653255 - MT2C_Mm LTR ERVL 0 475 2 5 970 6602 72 33 6 chr1 50542303 50543193 -146652239 - L1Md_F2 LINE L1 -2 6580 5667 5 970 386 402 54 0 chr1 50543415 50543599 -146651833 - B3A SINE B2 -2 196 3 5 970 472 371 84 24 chr1 50543872 50544123 -146651309 + B4 SINE B4 5 270 -22 6 970 306 148 0 0 chr1 50544179 50544233 -146651199 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 970 387 354 95 76 chr1 50544883 50545198 -146650234 - LTR40a LTR ERVL -138 381 61 6 970 1080 192 166 4 chr1 50546311 50546552 -146648880 - RLTR11A LTR ERVK -248 280 1 6 970 2784 75 5 10 chr1 50546810 50547199 -146648233 + L1_Mus3 LINE L1 6250 6636 -2 6 970 378 0 0 0 chr1 50547549 50547591 -146647841 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 970 617 110 0 10 chr1 50547597 50547698 -146647734 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 6 970 326 162 59 17 chr1 50548978 50549097 -146646335 + (TA)n Simple_repeat Simple_repeat 1 124 0 6 970 229 241 36 0 chr1 50549107 50549190 -146646242 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 6 970 279 0 0 0 chr1 50549192 50549223 -146646209 + (CATA)n Simple_repeat Simple_repeat 2 32 0 6 970 213 204 0 0 chr1 50549732 50549776 -146645656 + GA-rich Low_complexity Low_complexity 4 47 0 7 970 180 0 0 0 chr1 50550419 50550439 -146644993 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 970 8188 134 17 36 chr1 50550439 50551526 -146643906 - Lx3A LINE L1 -13 6968 5911 7 970 186 43 0 0 chr1 50551526 50551549 -146643883 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 970 14435 100 28 14 chr1 50551549 50552831 -146642601 - Lx3A LINE L1 -1071 5910 4638 7 970 258 32 0 0 chr1 50552831 50552862 -146642570 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 970 14435 99 28 13 chr1 50552862 50553845 -146641587 - Lx3A LINE L1 -1249 4637 3614 7 970 1950 211 15 20 chr1 50553869 50554290 -146641142 + MTC LTR MaLR 2 407 -14 7 970 11461 53 3 0 chr1 50554712 50556156 -146639276 + L1Md_F3 LINE L1 4138 5586 -297 7 970 8095 39 2 1 chr1 50556156 50557139 -146638293 + L1Md_F3 LINE L1 5587 6570 -14 7 970 24 0 0 0 chr1 50557844 50557868 -146637564 + AT_rich Low_complexity Low_complexity 1 24 0 7 970 22 0 0 0 chr1 50557953 50557975 -146637457 + AT_rich Low_complexity Low_complexity 1 22 0 7 970 468 117 0 0 chr1 50558348 50558425 -146637007 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 970 25 31 0 0 chr1 50558425 50558457 -146636975 + AT_rich Low_complexity Low_complexity 1 32 0 8 970 220 211 0 0 chr1 50558591 50558629 -146636803 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 8 970 736 254 85 7 chr1 50558629 50558910 -146636522 - Lx9 LINE L1 -130 7514 7212 8 970 224 91 0 22 chr1 50559033 50559078 -146636354 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 970 281 210 32 0 chr1 50559122 50559184 -146636248 - B1_Mur1 SINE Alu 0 149 86 8 970 183 129 0 0 chr1 50559223 50559254 -146636178 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 970 2916 193 35 6 chr1 50559360 50559907 -146635525 + RLTR20D LTR ERVK 6 568 0 8 970 475 347 54 0 chr1 50561327 50561494 -146633938 + Lx9 LINE L1 6347 6522 -1122 8 970 2147 88 7 0 chr1 50561536 50561831 -146633601 - L1_Mus3 LINE L1 -2 6636 6340 8 970 1150 74 0 0 chr1 50561831 50561980 -146633452 + L1_Mus3 LINE L1 6190 6338 -300 8 970 1219 306 129 25 chr1 50561977 50562721 -146632711 + Lx9 LINE L1 6513 7333 -311 8 970 243 0 0 0 chr1 50562859 50562886 -146632546 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 970 1117 90 0 0 chr1 50562889 50563034 -146632398 - B1_Mm SINE Alu -2 145 1 9 970 251 212 30 15 chr1 50565441 50565508 -146629924 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 9 970 23 0 0 0 chr1 50565532 50565555 -146629877 + AT_rich Low_complexity Low_complexity 1 23 0 9 970 7683 65 2 3 chr1 50566054 50567051 -146628381 - L1Md_F2 LINE L1 0 6582 5587 9 970 283 395 58 23 chr1 50567107 50567278 -146628154 - MLT1D LTR MaLR -12 493 317 9 970 303 323 47 65 chr1 50568334 50568549 -146626883 - L1MC2 LINE L1 -19 6325 6115 9 970 248 277 169 21 chr1 50568889 50569117 -146626315 - L1MC2 LINE L1 -1688 6097 5835 9 970 21 0 0 0 chr1 50570144 50570165 -146625267 + AT_rich Low_complexity Low_complexity 1 21 0 9 970 328 244 39 0 chr1 50572386 50572464 -146622968 + RLTR23 LTR ERV1 8 88 -342 9 970 530 251 68 63 chr1 50572665 50572856 -146622576 + RLTR23 LTR ERV1 239 430 0 9 970 280 347 83 10 chr1 50574076 50574107 -146621325 - B3 SINE B2 -10 206 169 9 970 243 0 0 0 chr1 50574107 50574134 -146621298 + (CATG)n Simple_repeat Simple_repeat 2 28 0 9 970 280 347 83 10 chr1 50574134 50574294 -146621138 - B3 SINE B2 -48 168 1 9 970 266 370 109 35 chr1 50574994 50575277 -146620155 - MLT1H1 LTR MaLR -212 343 40 1 970 244 308 158 4 chr1 50575528 50575756 -146619676 - L1MA6 LINE L1 -21 6279 6017 1 970 652 304 129 18 chr1 50575837 50576386 -146619046 - L1MA6 LINE L1 -402 5898 5289 1 970 540 224 160 0 chr1 50576402 50576527 -146618905 - B1_Mus2 SINE Alu -2 145 1 1 970 6340 52 19 7 chr1 50576886 50577696 -146617736 - L1Md_F3 LINE L1 -5 6579 5761 1 970 314 287 26 9 chr1 50578004 50578120 -146617312 + CT-rich Low_complexity Low_complexity 3 120 0 1 970 561 262 78 54 chr1 50578420 50578751 -146616681 + RLTR15 LTR ERVK 1 339 -20 1 970 185 250 13 0 chr1 50578836 50578912 -146616520 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 970 561 331 123 19 chr1 50578953 50579375 -146616057 + L1MC1 LINE L1 5727 6192 -141 1 970 32 67 0 0 chr1 50579653 50579713 -146615719 + AT_rich Low_complexity Low_complexity 1 60 0 1 970 4813 62 0 5 chr1 50580248 50580868 -146614564 - L1Md_F2 LINE L1 0 6582 5966 1 970 23 33 0 0 chr1 50581192 50581222 -146614210 + AT_rich Low_complexity Low_complexity 1 30 0 1 970 557 53 0 0 chr1 50581562 50581637 -146613795 - B1_Mur4 SINE Alu 0 150 76 1 970 252 303 11 136 chr1 50581568 50581656 -146613776 - B4 SINE B4 -72 220 144 1 970 779 265 18 68 chr1 50581869 50582088 -146613344 + MTD LTR MaLR 1 208 -211 1 970 189 74 0 0 chr1 50582156 50582183 -146613249 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 1 970 21 57 0 0 chr1 50584346 50584381 -146611051 + AT_rich Low_complexity Low_complexity 1 35 0 1 970 306 333 105 5 chr1 50584553 50584743 -146610689 + L1MEc LINE L1 130 338 -6062 1 970 418 332 103 30 chr1 50584895 50585196 -146610236 + L1MEc LINE L1 560 882 -5518 1 970 1381 257 92 20 chr1 50585208 50585820 -146609612 + L1_Rod LINE L1 1251 1906 -3941 1 970 1040 59 0 0 chr1 50585916 50586051 -146609381 + B1_Mus2 SINE Alu 13 147 0 1 970 556 324 54 26 chr1 50586063 50586412 -146609020 + L1_Rod LINE L1 1961 2319 -3528 1 970 1977 200 123 148 chr1 50586412 50586487 -146608945 - RMER19C LTR ERVK 0 611 536 1 970 393 155 60 0 chr1 50586487 50586571 -146608861 + L1_Mus3 LINE L1 6548 6636 -2 1 970 1977 200 123 148 chr1 50586571 50586617 -146608815 - RMER19C LTR ERVK -76 535 535 1 970 1620 4 0 0 chr1 50586617 50586890 -146608542 + (GGGAA)n Simple_repeat Simple_repeat 1 273 0 1 970 1977 200 123 148 chr1 50586890 50586966 -146608466 - RMER19C LTR ERVK -76 535 474 1 970 5543 48 1 0 chr1 50586966 50587650 -146607782 + L1Md_F2 LINE L1 5886 6570 -12 1 970 1977 200 123 148 chr1 50587650 50588076 -146607356 - RMER19C LTR ERVK -138 473 2 1 970 710 254 185 3 chr1 50588077 50588385 -146607047 + L1_Rod LINE L1 2319 2682 -3165 1 970 921 322 44 33 chr1 50588645 50589011 -146606421 - MTEa LTR MaLR -9 370 1 1 970 186 281 15 30 chr1 50589721 50589787 -146605645 + MIR SINE MIR 79 143 -119 1 970 907 112 70 0 chr1 50590523 50590666 -146604766 - RLTR11A LTR ERVK -9 519 367 1 970 1109 179 10 5 chr1 50590667 50590863 -146604569 + Lx2B LINE L1 6151 6347 -653 1 970 582 15 0 0 chr1 50590871 50590938 -146604494 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 1 970 3503 178 2 5 chr1 50590945 50591572 -146603860 - Lx LINE L1 -19 6635 6011 1 970 3103 230 64 26 chr1 50591572 50592339 -146603093 + Lx LINE L1 5684 6479 -175 1 970 1536 193 46 23 chr1 50592339 50592646 -146602786 - RLTR11A LTR ERVK -205 323 10 1 970 1714 16 0 0 chr1 50593409 50593602 -146601830 - B2_Mm1t SINE B2 0 193 1 1 971 8293 42 0 1 chr1 50596685 50598015 -146597417 - L1Md_F2 LINE L1 -2 6580 5252 1 971 20734 171 86 12 chr1 50598010 50603811 -146591621 - L1_Mus4 LINE L1 -22 6614 357 1 971 2040 65 0 0 chr1 50605456 50605716 -146589716 - L1_Mus1 LINE L1 -1 6566 6307 1 971 2558 68 0 0 chr1 50605716 50606038 -146589394 + L1_Mus1 LINE L1 6000 6321 -246 1 971 24 53 0 0 chr1 50608123 50608161 -146587271 + AT_rich Low_complexity Low_complexity 1 38 0 1 971 521 303 0 7 chr1 50608254 50608397 -146587035 - Lx9 LINE L1 -451 7193 7052 1 971 4287 139 39 30 chr1 50608496 50609259 -146586173 + Lx LINE L1 5875 6644 -10 1 971 185 235 0 0 chr1 50609307 50609341 -146586091 + MIR SINE MIR 226 259 -3 1 971 222 156 0 0 chr1 50609344 50609389 -146586043 + A-rich Low_complexity Low_complexity 1 45 0 1 971 1470 221 37 26 chr1 50610326 50610674 -146584758 + MTC LTR MaLR 3 354 -67 1 971 1066 204 34 29 chr1 50610674 50611129 -146584303 + L1_Rod LINE L1 1138 1587 -4260 1 971 2141 267 75 58 chr1 50611278 50612179 -146583253 - RMER17B LTR ERVK -34 874 51 1 971 2726 147 26 6 chr1 50612264 50612924 -146582508 + L1VL4 LINE L1 444 1111 -2504 1 971 241 313 66 99 chr1 50612925 50613106 -146582326 + MT2B LTR ERVL 90 264 -337 1 971 801 119 0 0 chr1 50613019 50613137 -146582295 + B1_Mus1 SINE Alu 27 144 -4 1 971 351 44 0 0 chr1 50613140 50613185 -146582247 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 971 1124 125 30 5 chr1 50613198 50613399 -146582033 + MusHAL1 LINE L1 210 415 -2297 1 971 9329 190 45 14 chr1 50613377 50615241 -146580191 + L1_Mur1 LINE L1 1933 3851 -2035 1 971 198 0 0 0 chr1 50615241 50615263 -146580169 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 971 9329 197 86 15 chr1 50615263 50615732 -146579700 + L1_Mur1 LINE L1 3843 4523 -1354 1 971 1442 211 40 0 chr1 50615722 50615842 -146579590 + Lx2 LINE L1 6010 6136 -861 1 971 2011 50 15 4 chr1 50615842 50616104 -146579328 + L1Md_F2 LINE L1 6318 6582 0 1 971 1442 211 40 0 chr1 50616104 50616305 -146579127 + Lx2 LINE L1 6137 6343 -654 1 971 1624 160 11 18 chr1 50616327 50616613 -146578819 - Lx3B LINE L1 -4 6969 6686 1 971 1217 178 65 5 chr1 50616615 50616830 -146578602 + 7SK RNA RNA 9 236 -95 1 971 3143 186 77 8 chr1 50616830 50617437 -146577995 + Lx2 LINE L1 6334 6982 -15 1 971 476 220 16 132 chr1 50617431 50617688 -146577744 + L1_Rod LINE L1 1556 1782 -4065 1 971 434 219 210 7 chr1 50617706 50617844 -146577588 - Lx4A LINE L1 0 7058 6893 1 971 24 0 0 0 chr1 50618177 50618201 -146577231 + AT_rich Low_complexity Low_complexity 1 24 0 1 971 213 39 0 0 chr1 50619202 50619228 -146576204 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 971 270 261 99 16 chr1 50619351 50619472 -146575960 - MTEb LTR MaLR -9 370 240 1 971 30 0 0 0 chr1 50619474 50619504 -146575928 + AT_rich Low_complexity Low_complexity 1 30 0 1 971 21 0 0 0 chr1 50619741 50619762 -146575670 + AT_rich Low_complexity Low_complexity 1 21 0 1 971 204 0 83 0 chr1 50619954 50619990 -146575442 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 971 1105 75 7 0 chr1 50619997 50620144 -146575288 - B1_Mus1 SINE Alu 0 148 1 1 971 595 309 136 25 chr1 50620493 50620735 -146574697 - RMER1C Other Other -527 815 547 1 971 2173 256 26 29 chr1 50620699 50621311 -146574121 + RMER1C Other Other 726 1335 -7 1 971 567 287 60 54 chr1 50621365 50621549 -146573883 + B3 SINE B2 15 199 -17 1 971 26 0 0 0 chr1 50621780 50621806 -146573626 + AT_rich Low_complexity Low_complexity 1 26 0 1 971 674 229 14 0 chr1 50621953 50622093 -146573339 + MTD LTR MaLR 278 419 0 1 971 254 68 0 43 chr1 50622396 50622442 -146572990 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 971 7321 115 25 5 chr1 50623279 50624385 -146571047 - L1_Mus3 LINE L1 -74 5809 4681 1 971 4948 102 72 4 chr1 50624385 50625151 -146570281 + L1_Mus3 LINE L1 5821 6638 0 1 971 614 233 165 52 chr1 50625221 50625470 -146569962 - RLTR10A LTR ERVK 0 411 135 1 971 181 269 142 63 chr1 50626589 50626716 -146568716 + L4 LINE RTE 1670 1806 -223 1 971 278 315 68 20 chr1 50626751 50626897 -146568535 + Tigger16a DNA Tigger 778 930 -3 1 971 21 71 0 0 chr1 50627340 50627382 -146568050 + AT_rich Low_complexity Low_complexity 1 42 0 1 971 257 27 0 51 chr1 50630159 50630198 -146565234 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 1 971 2486 102 99 0 chr1 50631050 50631414 -146564018 - MTB LTR MaLR 0 400 1 1 971 537 312 117 0 chr1 50632700 50632947 -146562485 + MER89 LTR ERV1 167 442 -117 1 971 230 235 24 12 chr1 50633325 50633407 -146562025 + L1M4 LINE L1 5676 5758 -426 1 971 1140 85 172 45 chr1 50633433 50633654 -146561778 + L1_Mus2 LINE L1 6318 6566 0 1 971 646 24 0 0 chr1 50634066 50634149 -146561283 + L1Md_T LINE L1 6500 6582 0 1 971 764 50 10 0 chr1 50634189 50634290 -146561142 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 1 971 1127 321 59 40 chr1 50635290 50635987 -146559445 + Lx9 LINE L1 6713 7422 -222 1 971 1155 186 81 35 chr1 50636288 50636690 -146558742 + RMER10B LTR ERVL 1 370 -28 1 971 405 0 0 0 chr1 50637700 50637745 -146557687 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 971 306 0 0 0 chr1 50637745 50637778 -146557654 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 971 6451 142 38 8 chr1 50638124 50639801 -146555631 - Lx LINE L1 -6 6648 4936 1 971 9105 167 43 40 chr1 50639811 50641538 -146553894 - L1_Mus1 LINE L1 -537 6030 4294 1 971 5420 159 9 25 chr1 50641538 50642509 -146552923 + RMER17B LTR ERVK 3 958 0 1 971 9105 203 58 53 chr1 50642509 50643316 -146552116 - L1_Mus1 LINE L1 -1590 4293 3484 1 971 222 37 0 0 chr1 50643316 50643343 -146552089 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 971 9105 203 58 53 chr1 50643343 50643511 -146551921 - L1_Mus1 LINE L1 -2400 3483 3314 1 971 2982 148 27 21 chr1 50645754 50646312 -146549120 - RLTR31_Mm LTR ERVK 0 561 1 1 971 776 337 50 48 chr1 50646397 50646918 -146548514 - Lx8 LINE L1 -1 7472 6951 1 971 23 0 0 0 chr1 50647108 50647131 -146548301 + AT_rich Low_complexity Low_complexity 1 23 0 1 971 272 340 113 34 chr1 50647794 50647998 -146547434 + MER58A DNA MER1_type 3 222 -2 1 971 34 84 0 0 chr1 50648337 50648420 -146547012 + AT_rich Low_complexity Low_complexity 1 83 0 1 971 7488 64 15 4 chr1 50648706 50649680 -146545752 + L1Md_F2 LINE L1 5587 6571 -11 1 971 294 125 0 0 chr1 50649868 50649916 -146545516 + (ATG)n Simple_repeat Simple_repeat 1 48 0 1 971 9025 156 77 3 chr1 50650250 50652872 -146542560 - Lx LINE L1 -5 6649 3807 1 971 1448 168 8 0 chr1 50652871 50653139 -146542293 + Lx LINE L1 3536 3805 -2081 1 971 25 31 0 0 chr1 50653783 50653815 -146541617 + AT_rich Low_complexity Low_complexity 1 32 0 1 971 2454 303 85 26 chr1 50653953 50654901 -146540531 + Lx7 LINE L1 6347 7350 -346 1 971 181 0 33 33 chr1 50655062 50655092 -146540340 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 2 971 389 358 85 25 chr1 50655512 50655793 -146539639 - MLT1A0 LTR MaLR -54 311 14 2 971 555 56 0 0 chr1 50655818 50655889 -146539543 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 971 231 114 0 0 chr1 50655890 50655925 -146539507 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 971 4136 241 56 65 chr1 50655927 50657549 -146537883 + Lx7 LINE L1 5351 6954 -742 2 971 560 194 29 0 chr1 50657609 50657748 -146537684 + Lx2A1 LINE L1 6855 6997 -11 2 971 284 232 12 12 chr1 50657763 50657846 -146537586 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 2 971 436 328 46 25 chr1 50657849 50658046 -146537386 + Tigger7 DNA MER2_type 365 565 -1926 2 971 309 284 108 49 chr1 50658056 50658260 -146537172 + Tigger7 DNA MER2_type 2167 2382 -109 2 971 300 375 46 14 chr1 50658508 50658727 -146536705 - L1MEd LINE L1 -5169 950 725 2 971 29 47 0 0 chr1 50659645 50659688 -146535744 + AT_rich Low_complexity Low_complexity 1 43 0 2 971 23 0 0 0 chr1 50660177 50660200 -146535232 + AT_rich Low_complexity Low_complexity 1 23 0 2 971 312 286 0 0 chr1 50660453 50660530 -146534902 + MTD LTR MaLR 18 94 -325 2 971 1064 89 0 0 chr1 50660777 50660912 -146534520 + B1_Mus1 SINE Alu 4 138 -10 2 971 186 43 0 0 chr1 50660912 50660935 -146534497 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 971 817 290 50 144 chr1 50660951 50661233 -146534199 - Lx6 LINE L1 -1 7459 7161 2 971 7620 117 6 26 chr1 50661233 50661395 -146534037 + Lx3A LINE L1 5747 5908 -1073 2 971 342 0 0 0 chr1 50661395 50661433 -146533999 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 2 971 972 26 0 0 chr1 50661433 50661547 -146533885 + (GGGA)n Simple_repeat Simple_repeat 4 118 0 2 971 7620 117 6 26 chr1 50661547 50662626 -146532806 + Lx3A LINE L1 5909 6962 -19 2 971 669 86 0 0 chr1 50662627 50662720 -146532712 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 2 971 817 290 50 144 chr1 50662720 50662878 -146532554 - Lx6 LINE L1 -300 7160 7059 2 971 646 135 0 0 chr1 50662884 50662980 -146532452 - Lx2A1 LINE L1 -157 6851 6756 2 971 1861 176 74 21 chr1 50662976 50663354 -146532078 - Lx3C LINE L1 -13 6963 6566 2 971 2742 61 0 20 chr1 50663354 50663707 -146531725 + ORR1A1 LTR MaLR 1 346 0 2 971 806 80 0 0 chr1 50663707 50663819 -146531613 + ORR1A1-int LTR MaLR 1 112 -1851 2 971 273 285 140 29 chr1 50664086 50664364 -146531068 - L1M3 LINE L1 -1266 4874 4566 2 971 31 68 0 0 chr1 50664602 50664661 -146530771 + AT_rich Low_complexity Low_complexity 1 59 0 2 971 3641 104 12 20 chr1 50665180 50665777 -146529655 - L1_Mur1 LINE L1 -1875 4011 3420 2 971 7382 133 48 28 chr1 50665776 50668051 -146527381 + Lx3A LINE L1 4674 6966 -15 2 971 585 105 0 0 chr1 50668059 50668145 -146527287 + (GGA)n Simple_repeat Simple_repeat 2 87 0 2 971 348 24 0 0 chr1 50668193 50668234 -146527198 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 971 182 319 56 42 chr1 50668760 50668832 -146526600 - L4 LINE RTE -1447 582 510 2 971 223 385 33 0 chr1 50668956 50669047 -146526385 - L2 LINE L2 -671 2748 2655 2 971 394 195 61 0 chr1 50669058 50669140 -146526292 + L1_Mm LINE L1 5250 5336 -547 2 971 915 178 12 91 chr1 50669137 50669432 -146526000 + L1_Mus4 LINE L1 5857 6119 -881 2 971 828 86 8 0 chr1 50669666 50669783 -146525649 + B1_Mm SINE Alu 29 146 -1 2 971 22 35 0 0 chr1 50671804 50671833 -146523599 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 216 111 0 0 chr1 50673344 50673380 -146522052 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 971 459 319 162 35 chr1 50675593 50676106 -146519326 - L1M4 LINE L1 -850 5296 4719 2 971 375 23 0 0 chr1 50676313 50676357 -146519075 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 971 378 0 0 0 chr1 50676358 50676400 -146519032 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 971 237 27 0 0 chr1 50678273 50678310 -146517122 - L1_Mus4 LINE L1 -7 6629 6593 2 971 195 100 0 0 chr1 50679111 50679141 -146516291 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 971 240 213 0 0 chr1 50681065 50681126 -146514306 + (TATG)n Simple_repeat Simple_repeat 4 64 0 2 971 23 33 0 0 chr1 50681331 50681361 -146514071 + AT_rich Low_complexity Low_complexity 1 30 0 2 971 312 252 60 10 chr1 50681738 50681838 -146513594 + Lx3B LINE L1 6866 6970 -3 2 971 7075 148 32 3 chr1 50682297 50683451 -146511981 + Lx4A LINE L1 5870 7057 -1 2 971 2168 132 3 0 chr1 50683730 50684056 -146511376 - ORR1A2 LTR MaLR 0 327 1 2 971 23 0 0 0 chr1 50684134 50684157 -146511275 + AT_rich Low_complexity Low_complexity 1 23 0 2 971 319 310 72 52 chr1 50684273 50684426 -146511006 + HAL1-3A_ME LINE L1 2284 2439 -419 2 971 351 0 0 0 chr1 50684890 50684929 -146510503 + (A)n Simple_repeat Simple_repeat 1 39 0 2 971 462 280 70 6 chr1 50687281 50687439 -146507993 + RMER5 LTR ERV1 319 486 -48 2 971 264 360 53 0 chr1 50688242 50688356 -146507076 - ID_B1 SINE B4 -19 205 86 2 971 1012 215 87 13 chr1 50689351 50689662 -146505770 - Lx9 LINE L1 -1 7643 7310 2 971 2673 254 117 25 chr1 50692159 50693036 -146502396 - Lx7 LINE L1 0 7696 6739 2 971 387 0 0 0 chr1 50693107 50693150 -146502282 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 971 22 35 0 0 chr1 50693263 50693292 -146502140 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 227 295 117 41 chr1 50693689 50693834 -146501598 + RMER4A LTR ERVK 8 163 -303 2 971 369 171 0 0 chr1 50693878 50693966 -146501466 + T-rich Low_complexity Low_complexity 1 88 0 2 971 1070 109 0 0 chr1 50693977 50694124 -146501308 - B1_Mus1 SINE Alu -1 147 1 2 971 781 317 67 18 chr1 50694810 50695199 -146500233 - LTR37A LTR ERV1 0 426 19 2 971 342 262 119 92 chr1 50696936 50697116 -146498316 + ORR1E LTR MaLR 5 190 -169 2 971 524 267 7 33 chr1 50697116 50697267 -146498165 - B1_Mur2 SINE Alu 0 149 3 2 971 295 219 35 47 chr1 50697270 50697356 -146498076 + ORR1E LTR MaLR 257 341 -29 2 971 207 69 0 0 chr1 50697726 50697755 -146497677 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 971 548 322 45 10 chr1 50698454 50698655 -146496777 + B3 SINE B2 6 213 -3 2 971 36 23 0 0 chr1 50699261 50699304 -146496128 + AT_rich Low_complexity Low_complexity 1 43 0 2 971 267 316 0 0 chr1 50699566 50699642 -146495790 - MLT2D LTR ERVL -8 552 477 2 971 26 82 0 0 chr1 50699889 50699950 -146495482 + AT_rich Low_complexity Low_complexity 1 61 0 2 971 647 284 18 13 chr1 50700539 50700767 -146494665 - L1M2 LINE L1 -2298 3845 3617 2 971 1185 342 83 48 chr1 50700762 50701609 -146493823 + Lx8 LINE L1 6258 7133 -340 2 971 195 69 0 0 chr1 50704828 50704857 -146490575 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 971 320 133 0 16 chr1 50704859 50704920 -146490512 + (GGGAGA)n Simple_repeat Simple_repeat 3 62 0 2 971 21 0 0 0 chr1 50705127 50705148 -146490284 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 478 260 21 64 chr1 50705682 50705822 -146489610 + MT2B LTR ERVL 145 278 -323 2 971 971 96 0 0 chr1 50705713 50705849 -146489583 + B1_Mus1 SINE Alu 13 148 0 2 971 231 303 0 83 chr1 50707054 50707126 -146488306 - ID2 SINE ID -6 77 12 2 971 246 303 0 13 chr1 50707210 50707287 -146488145 + CT-rich Low_complexity Low_complexity 3 78 0 2 971 503 306 38 0 chr1 50707312 50707498 -146487934 - Lx8 LINE L1 -300 7173 6981 2 971 845 312 36 45 chr1 50707494 50707850 -146487582 + Lx8 LINE L1 6599 6951 -522 2 971 225 83 0 0 chr1 50707893 50707929 -146487503 + (T)n Simple_repeat Simple_repeat 1 36 0 2 971 217 188 21 0 chr1 50708054 50708102 -146487330 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 971 35 0 0 0 chr1 50708809 50708844 -146486588 + AT_rich Low_complexity Low_complexity 1 35 0 2 971 21 36 0 0 chr1 50709676 50709704 -146485728 + AT_rich Low_complexity Low_complexity 1 28 0 2 971 28 29 0 0 chr1 50709733 50709768 -146485664 + AT_rich Low_complexity Low_complexity 1 35 0 2 971 441 0 0 0 chr1 50710243 50710292 -146485140 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 971 387 0 0 0 chr1 50710292 50710334 -146485098 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 971 249 329 81 20 chr1 50710357 50710506 -146484926 - B4 SINE B4 -7 285 128 2 971 21 36 0 0 chr1 50710757 50710785 -146484647 + AT_rich Low_complexity Low_complexity 1 28 0 2 971 15631 73 11 3 chr1 50711679 50713783 -146481649 + L1_Mm LINE L1 3652 5772 -111 2 971 1246 60 0 0 chr1 50713783 50713950 -146481482 + L1Md_F2 LINE L1 6399 6565 -17 2 971 6090 59 11 4 chr1 50713954 50714748 -146480684 + L1Md_F2 LINE L1 5783 6582 0 2 971 219 352 21 7 chr1 50714945 50715085 -146480347 + (CATATA)n Simple_repeat Simple_repeat 3 144 0 2 971 242 217 16 16 chr1 50714954 50715015 -146480417 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 971 226 296 73 9 chr1 50715287 50715396 -146480036 - Lx7 LINE L1 -17 7679 7564 2 971 519 56 0 0 chr1 50715412 50715483 -146479949 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 971 887 344 24 10 chr1 50715498 50715912 -146479520 - Lx7 LINE L1 -378 7318 6899 2 971 618 288 96 16 chr1 50715915 50716166 -146479266 + Lx7 LINE L1 6623 6893 -803 2 971 666 249 241 38 chr1 50716606 50717113 -146478319 - Lx9 LINE L1 0 7644 6892 2 971 571 181 68 0 chr1 50717127 50717260 -146478172 - L1_Mus3 LINE L1 -4 6634 6493 2 971 3239 64 164 0 chr1 50717260 50717730 -146477702 + L1_Mus3 LINE L1 5612 6158 -480 2 971 1708 294 73 19 chr1 50717735 50718382 -146477050 - Lx9 LINE L1 -594 7050 6369 2 971 2300 94 30 3 chr1 50718493 50718823 -146476609 - L1Md_F2 LINE L1 -14 6568 6230 2 971 1306 84 0 11 chr1 50718823 50718872 -146476560 + L1Md_F2 LINE L1 5958 6006 -576 2 971 6142 44 0 0 chr1 50718872 50719617 -146475815 + L1Md_T LINE L1 5837 6581 -1 2 971 1306 84 0 11 chr1 50719617 50719748 -146475684 + L1Md_F2 LINE L1 6007 6136 -446 2 971 5295 40 2 0 chr1 50719746 50720389 -146475043 + L1Md_F2 LINE L1 5598 6241 -341 2 971 457 356 40 11 chr1 50721157 50721333 -146474099 + B3A SINE B2 3 183 -15 2 971 1829 126 0 0 chr1 50721449 50721734 -146473698 + Lx LINE L1 6370 6654 0 3 971 1158 267 59 31 chr1 50721761 50722117 -146473315 + ORR1D2 LTR MaLR 5 370 0 3 971 444 214 37 41 chr1 50722414 50722564 -146472868 + L1_Rod LINE L1 5509 5701 -590 3 971 2603 269 74 31 chr1 50722563 50723683 -146471749 + Lx8 LINE L1 4752 5927 -1546 3 971 258 32 0 0 chr1 50724029 50724060 -146471372 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 971 1991 131 15 59 chr1 50724117 50724458 -146470974 + ORR1A3 LTR MaLR 1 326 0 3 971 21 36 0 0 chr1 50724583 50724611 -146470821 + AT_rich Low_complexity Low_complexity 1 28 0 3 121 197 333 39 54 chr1 50724826 50724956 -146470476 + MIR SINE MIR 110 237 -25 3 972 787 222 86 5 chr1 50725588 50725774 -146469658 - ORR1D1 LTR MaLR 0 374 174 3 972 360 0 0 0 chr1 50725806 50725846 -146469586 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 972 543 121 0 0 chr1 50725846 50725945 -146469487 + (GA)n Simple_repeat Simple_repeat 1 99 0 3 972 624 276 47 31 chr1 50725952 50726143 -146469289 - ORR1D1 LTR MaLR -180 194 1 3 972 1284 293 29 6 chr1 50726158 50726501 -146468931 - MTD LTR MaLR -68 351 1 3 972 2010 258 129 50 chr1 50727684 50729132 -146466300 + RMER1B Other Other 5 1061 -5 3 972 679 83 19 0 chr1 50729132 50729240 -146466192 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 972 359 355 45 62 chr1 50729278 50729569 -146465863 + L1M4c LINE L1 1732 2017 -4991 3 972 749 276 6 23 chr1 50729583 50729757 -146465675 - B3 SINE B2 -7 209 39 3 972 304 341 87 43 chr1 50729773 50730237 -146465195 + L1M4c LINE L1 2136 2564 -4538 3 972 264 331 7 15 chr1 50730269 50730404 -146465028 + A-rich Low_complexity Low_complexity 3 136 0 3 972 4834 126 29 36 chr1 50730531 50730639 -146464793 + L1_Mur1 LINE L1 4769 4858 -1028 3 972 1285 107 0 11 chr1 50730639 50730828 -146464604 + L1_Mus1 LINE L1 6381 6567 0 3 972 4834 126 29 36 chr1 50730828 50731568 -146463864 + L1_Mur1 LINE L1 4859 5611 -275 3 972 544 224 0 15 chr1 50731611 50731747 -146463685 + L1_Mur3 LINE L1 530 663 -7049 3 972 2533 280 45 24 chr1 50731729 50732580 -146462852 + L1_Mur3 LINE L1 324 1192 -6520 3 972 2562 144 101 9 chr1 50732998 50733479 -146461953 - Lx LINE L1 -215 6794 6121 3 972 23 0 0 0 chr1 50734268 50734291 -146461141 + AT_rich Low_complexity Low_complexity 1 23 0 3 972 288 337 110 34 chr1 50734310 50734574 -146460858 + B4A SINE B4 5 288 -4 3 972 3311 270 62 2 chr1 50734690 50734870 -146460562 + Lx6 LINE L1 6557 6737 -723 3 972 315 0 0 0 chr1 50734870 50734905 -146460527 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 3 972 3311 270 62 2 chr1 50734905 50735575 -146459857 + Lx6 LINE L1 6738 7457 -3 3 972 889 94 7 48 chr1 50736765 50736910 -146458522 - Lx3A LINE L1 -1026 5955 5817 3 972 1413 127 38 4 chr1 50736910 50737148 -146458284 + Lx3_Mus LINE L1 6764 7009 0 3 972 516 84 0 14 chr1 50737840 50737912 -146457520 - L1_Mur1 LINE L1 -934 4952 4882 3 972 1156 85 0 0 chr1 50737912 50738065 -146457367 + L1_Mur1 LINE L1 4936 5088 -798 3 972 366 316 8 0 chr1 50738383 50738516 -146456916 - L1MC4 LINE L1 -211 7831 7698 3 972 4304 65 21 5 chr1 50738534 50739106 -146456326 + L1Md_F2 LINE L1 6001 6581 -1 3 972 200 59 29 0 chr1 50739110 50739144 -146456288 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 972 459 276 0 0 chr1 50739361 50739466 -146455966 + MIRb SINE MIR 77 181 -87 3 972 36 40 0 0 chr1 50740971 50741021 -146454411 + AT_rich Low_complexity Low_complexity 1 50 0 3 972 21 0 0 0 chr1 50743325 50743346 -146452086 + AT_rich Low_complexity Low_complexity 1 21 0 3 972 2424 196 21 10 chr1 50743641 50744121 -146451311 - Lx5 LINE L1 -3 7047 6563 3 972 210 217 35 24 chr1 50744508 50744593 -146450839 + (TTAA)n Simple_repeat Simple_repeat 3 88 0 3 972 22 0 0 0 chr1 50746349 50746371 -146449061 + AT_rich Low_complexity Low_complexity 1 22 0 3 972 391 281 102 64 chr1 50746458 50746694 -146448738 - MTEa LTR MaLR -32 347 103 3 972 25 31 0 0 chr1 50746939 50746971 -146448461 + AT_rich Low_complexity Low_complexity 1 32 0 3 972 35 0 0 0 chr1 50747143 50747178 -146448254 + AT_rich Low_complexity Low_complexity 1 35 0 3 972 9331 114 83 3 chr1 50748463 50750718 -146444714 - L1_Mus3 LINE L1 0 6638 4178 3 972 38 51 0 0 chr1 50750718 50750777 -146444655 + AT_rich Low_complexity Low_complexity 1 59 0 3 972 200 162 27 0 chr1 50751516 50751553 -146443879 - L2c LINE L2 -2 3385 3348 3 972 626 341 100 20 chr1 50751559 50751909 -146443523 + LTR52 LTR ERVL 2 379 -42 3 972 861 229 107 91 chr1 50751909 50752217 -146443215 + Lx3C LINE L1 6664 6976 0 3 972 21 36 0 0 chr1 50752222 50752250 -146443182 + AT_rich Low_complexity Low_complexity 1 28 0 3 972 1695 211 147 33 chr1 50752949 50753492 -146441940 - Lx9 LINE L1 0 7644 7040 3 972 33 0 0 0 chr1 50755488 50755521 -146439911 + AT_rich Low_complexity Low_complexity 1 33 0 3 972 1126 75 0 14 chr1 50755976 50756124 -146439308 + B1_Mus2 SINE Alu 2 147 0 3 972 288 309 11 0 chr1 50756675 50756769 -146438663 + Lx9 LINE L1 6902 6996 -648 3 972 891 229 80 8 chr1 50756792 50757056 -146438376 - Lx9 LINE L1 -7 7637 7355 3 972 1644 134 28 0 chr1 50757065 50757318 -146438114 - L1_Mur2 LINE L1 -55 5822 5563 3 972 2862 166 45 4 chr1 50757318 50757827 -146437605 + Lx4A LINE L1 6527 7056 -2 3 972 24 32 0 0 chr1 50758016 50758047 -146437385 + AT_rich Low_complexity Low_complexity 1 31 0 3 972 1835 279 70 27 chr1 50758073 50758669 -146436763 + Lx9 LINE L1 6375 6996 -648 3 972 902 209 83 0 chr1 50758692 50758922 -146436510 - Lx9 LINE L1 -7 7637 7389 3 972 1032 320 61 50 chr1 50758922 50759411 -146436021 + Lx8 LINE L1 6842 7336 -137 3 972 414 0 0 0 chr1 50759411 50759457 -146435975 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 972 1032 320 61 50 chr1 50759457 50759589 -146435843 + Lx8 LINE L1 7337 7469 -4 3 972 1293 256 106 18 chr1 50759694 50760080 -146435352 + Lx6 LINE L1 7019 7438 -22 3 972 1715 149 70 80 chr1 50761663 50762065 -146433367 + RMER10B LTR ERVL 1 398 0 3 972 3442 173 46 15 chr1 50762117 50762775 -146432657 + RMER6D LTR ERVK 1 678 -42 3 972 2610 234 103 64 chr1 50762977 50763834 -146431598 + RMER19B LTR ERVK 1 890 -12 3 972 1697 58 40 0 chr1 50764150 50764373 -146431059 - L1_Mus1 LINE L1 -313 6254 6023 3 972 2432 53 0 0 chr1 50764374 50764796 -146430636 + L1_Mus1 LINE L1 6257 6567 0 3 972 4757 144 12 4 chr1 50765200 50766127 -146429305 - Lx2 LINE L1 -1034 5963 5024 3 972 2447 204 16 0 chr1 50766129 50766624 -146428808 + Lx2 LINE L1 5971 6473 -524 3 972 2046 106 46 14 chr1 50766624 50766970 -146428462 + RMER17D2 LTR ERVK 1 357 -452 3 972 31130 45 7 0 chr1 50766970 50771109 -146424323 + MERVL-int LTR ERVL 1311 5453 -308 3 972 273 167 26 53 chr1 50771109 50771185 -146424247 + ORR1A3-int LTR MaLR 567 640 -1323 3 972 281 53 0 0 chr1 50771185 50771223 -146424209 + MERVL-int LTR ERVL 5448 5485 0 3 972 3682 54 18 47 chr1 50771223 50771731 -146423701 + MT2_Mm LTR ERVL 1 493 0 3 972 622 101 11 0 chr1 50771731 50771820 -146423612 + RMER17D2 LTR ERVK 89 178 -631 3 972 1644 163 24 0 chr1 50771820 50772109 -146423323 + Lx2 LINE L1 6696 6991 -6 3 972 490 162 67 127 chr1 50773875 50774009 -146421423 + RLTR20A1 LTR ERVK 75 200 -351 3 972 414 0 0 0 chr1 50774123 50774169 -146421263 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 972 189 0 0 0 chr1 50774169 50774190 -146421242 + (TTG)n Simple_repeat Simple_repeat 3 23 0 3 972 448 256 0 13 chr1 50774190 50774296 -146421136 + RLTR16 LTR ERVK 410 568 0 3 972 301 282 33 85 chr1 50774440 50774676 -146420756 + RMER3D-int LTR ERVK 134 344 -2498 3 972 1094 110 0 0 chr1 50775032 50775178 -146420254 + B1_Mus1 SINE Alu 1 146 -2 3 972 439 224 74 13 chr1 50775392 50775512 -146419920 + MYSERV16_I-int LTR ERVK 1 123 -2203 3 972 5758 67 8 0 chr1 50775512 50776256 -146419176 + L1Md_F2 LINE L1 5821 6570 -12 3 972 439 224 74 13 chr1 50776256 50776284 -146419148 + MYSERV16_I-int LTR ERVK 124 158 -2168 3 972 582 160 22 30 chr1 50776295 50776430 -146419002 + MYSERV16_I-int LTR ERVK 289 422 -1904 3 972 221 57 29 0 chr1 50776430 50776465 -146418967 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 972 1319 210 100 59 chr1 50776465 50776949 -146418483 + MYSERV16_I-int LTR ERVK 503 1119 -1207 3 972 1114 76 7 0 chr1 50776994 50777139 -146418293 - B1_Mm SINE Alu 0 147 2 3 972 4341 158 114 2 chr1 50777140 50778101 -146417331 + MYSERV16_I-int LTR ERVK 1105 2173 -153 3 972 23915 73 147 2 chr1 50778101 50782642 -146412790 + L1Md_F2 LINE L1 380 5586 -297 3 972 8055 51 2 0 chr1 50782643 50783636 -146411796 + L1Md_F2 LINE L1 5588 6582 0 3 972 466 153 129 0 chr1 50783637 50783761 -146411671 + MYSERV16_I-int LTR ERVK 2165 2304 -22 3 972 520 297 49 69 chr1 50783830 50784076 -146411356 + RLTR20D LTR ERVK 51 291 -277 3 972 649 259 6 54 chr1 50784059 50784226 -146411206 + RLTR20D LTR ERVK 410 568 0 3 972 450 0 0 0 chr1 50784798 50784848 -146410584 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 972 977 153 0 6 chr1 50785063 50785240 -146410192 + GA-rich Low_complexity Low_complexity 3 178 0 3 972 201 147 0 0 chr1 50785248 50785282 -146410150 + (GGAGAA)n Simple_repeat Simple_repeat 4 37 0 3 972 764 240 234 77 chr1 50785533 50786016 -146409416 - RMER1C Other Other -2 1340 782 3 972 279 0 0 0 chr1 50786452 50786483 -146408949 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 972 609 246 100 25 chr1 50786845 50787045 -146408387 - B3 SINE B2 -1 215 1 3 972 27 29 0 0 chr1 50787187 50787221 -146408211 + AT_rich Low_complexity Low_complexity 1 34 0 3 972 233 0 62 0 chr1 50787385 50787417 -146408015 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 972 225 0 0 0 chr1 50788011 50788036 -146407396 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 972 3256 162 28 9 chr1 50788303 50788869 -146406563 - RLTR20B3 LTR ERVK 0 577 1 3 972 458 270 63 53 chr1 50788881 50789088 -146406344 - RLTR15 LTR ERVK -68 291 83 3 972 297 137 0 0 chr1 50789195 50789246 -146406186 - RLTR12B LTR ERVK -463 65 15 3 972 1184 304 58 16 chr1 50789470 50790088 -146405344 + L1MA4 LINE L1 5297 5940 -360 3 972 183 204 0 0 chr1 50791080 50791129 -146404303 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 972 8142 162 10 14 chr1 50791577 50793027 -146402405 + Lx2B LINE L1 5552 6992 -8 3 972 2063 255 46 23 chr1 50793065 50793680 -146401752 + Lx7 LINE L1 5779 6410 -1286 3 972 9083 30 0 0 chr1 50793678 50794763 -146400669 - L1_Mm LINE L1 -1043 4840 3756 3 972 1903 23 0 0 chr1 50794762 50794980 -146400452 + L1Md_T LINE L1 5369 5586 -297 3 972 8315 34 6 0 chr1 50794980 50795970 -146399462 + L1Md_T LINE L1 5587 6582 0 3 972 976 99 1 173 chr1 50795977 50796202 -146399230 + L1_Mus2 LINE L1 6390 6580 -2 3 972 2274 252 90 11 chr1 50796228 50797123 -146398309 + Lx7 LINE L1 6400 7389 -307 3 972 555 16 0 0 chr1 50797136 50797200 -146398232 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 3 972 584 250 81 5 chr1 50797233 50797296 -146398136 + Lx7 LINE L1 7496 7563 -133 3 972 234 0 0 0 chr1 50797296 50797322 -146398110 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 972 584 250 81 5 chr1 50797322 50797443 -146397989 + Lx7 LINE L1 7564 7693 -3 3 972 432 0 0 0 chr1 50797574 50797622 -146397810 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 972 23 0 0 0 chr1 50797754 50797777 -146397655 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 204 286 18 0 chr1 50798275 50798331 -146397101 + GA-rich Low_complexity Low_complexity 3 59 0 4 972 830 279 40 148 chr1 50798473 50798898 -146396534 - MTEb LTR MaLR 0 379 1 4 972 266 87 0 21 chr1 50799124 50799171 -146396261 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 4 972 462 75 0 0 chr1 50799438 50799505 -146395927 + (T)n Simple_repeat Simple_repeat 1 67 0 4 972 25 0 0 0 chr1 50800099 50800124 -146395308 + AT_rich Low_complexity Low_complexity 1 25 0 4 972 534 176 0 27 chr1 50800461 50800572 -146394860 - B1_Mur3 SINE Alu 0 149 42 4 972 184 0 0 161 chr1 50800579 50800741 -146394691 + CT-rich Low_complexity Low_complexity 28 163 0 4 972 210 143 0 0 chr1 50800581 50800616 -146394816 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 4 972 284 323 130 10 chr1 50800745 50800845 -146394587 - ID_B1 SINE B4 -89 135 24 4 972 635 149 7 33 chr1 50801303 50801456 -146393976 + Lx LINE L1 6505 6653 -1 4 972 23 54 0 0 chr1 50802256 50802293 -146393139 + AT_rich Low_complexity Low_complexity 1 37 0 4 972 559 118 0 35 chr1 50803769 50803883 -146391549 - Lx LINE L1 0 6654 6545 4 972 524 104 56 0 chr1 50804506 50804631 -146390801 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 4 972 8435 142 19 4 chr1 50804885 50806632 -146388800 - Lx3C LINE L1 -7 6969 5199 4 972 1642 135 35 0 chr1 50806620 50806902 -146388530 + L1_Mur1 LINE L1 4326 4617 -1269 4 972 944 328 112 33 chr1 50806931 50807579 -146387853 - Lx8 LINE L1 -507 6966 6289 4 972 261 363 95 15 chr1 50807694 50807831 -146387601 + RSINE1 SINE B4 3 150 -15 4 972 21 0 0 0 chr1 50808348 50808369 -146387063 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 528 283 21 16 chr1 50808369 50808559 -146386873 - Lx7 LINE L1 0 7696 7506 4 972 243 152 0 37 chr1 50808566 50808648 -146386784 + T-rich Low_complexity Low_complexity 1 79 0 4 972 2282 265 36 65 chr1 50808694 50808870 -146386562 - Lx7 LINE L1 0 7696 7530 4 972 1097 95 0 0 chr1 50808870 50809009 -146386423 + B1_Mus1 SINE Alu 1 139 -9 4 972 279 0 0 0 chr1 50809009 50809040 -146386392 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 972 2282 265 36 65 chr1 50809048 50809645 -146385787 - Lx7 LINE L1 -167 7529 6945 4 972 5065 205 50 56 chr1 50809640 50810304 -146385128 - L1_Mur3 LINE L1 -2012 3868 3197 4 972 2308 185 36 151 chr1 50810304 50810992 -146384440 + RMER19C LTR ERVK 3 611 0 4 972 5065 205 50 56 chr1 50810992 50811818 -146383614 - L1_Mur3 LINE L1 -2684 3196 2386 4 972 227 298 75 19 chr1 50812024 50812130 -146383302 - MLT1I LTR MaLR -19 392 281 4 972 432 82 0 0 chr1 50812149 50812210 -146383222 + (TATG)n Simple_repeat Simple_repeat 4 64 0 4 972 486 0 0 0 chr1 50812242 50812296 -146383136 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 4 972 4295 211 74 25 chr1 50812299 50814275 -146381157 - L1_Mur3 LINE L1 -3478 2402 311 4 972 1236 240 163 21 chr1 50814285 50814854 -146380578 - ORR1D1-int LTR MaLR -715 655 6 4 972 21 36 0 0 chr1 50815435 50815463 -146379969 + AT_rich Low_complexity Low_complexity 1 28 0 4 972 322 320 0 88 chr1 50815489 50815602 -146379830 - MER106A DNA MER1_type -133 103 1 4 972 938 251 0 5 chr1 50816042 50816246 -146379186 + B3 SINE B2 5 207 -9 4 972 21 71 0 0 chr1 50817274 50817316 -146378116 + AT_rich Low_complexity Low_complexity 1 42 0 4 972 301 349 19 0 chr1 50817459 50817565 -146377867 - PB1D7 SINE Alu -8 112 5 4 972 21 0 0 0 chr1 50818149 50818170 -146377262 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 597 67 0 0 chr1 50818324 50818399 -146377033 + Lx LINE L1 5691 5765 -889 4 972 392 316 0 0 chr1 50818408 50818506 -146376926 - B1F SINE Alu -51 98 1 4 972 5515 128 14 17 chr1 50818624 50819523 -146375909 + Lx LINE L1 5758 6654 0 4 972 34 24 0 0 chr1 50819881 50819922 -146375510 + AT_rich Low_complexity Low_complexity 1 41 0 4 972 656 360 150 23 chr1 50820134 50820861 -146374571 - Lx8 LINE L1 -10 7463 6645 4 972 958 188 106 0 chr1 50820864 50821119 -146374313 + Lx9 LINE L1 7362 7643 -1 4 972 276 341 145 65 chr1 50821144 50821558 -146373874 - Lx8 LINE L1 -1026 6447 6001 4 972 249 313 69 70 chr1 50821680 50821829 -146373603 - MTE2a LTR MaLR -132 247 95 4 972 819 31 0 0 chr1 50821881 50821979 -146373453 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 972 216 0 0 0 chr1 50821979 50822002 -146373430 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 972 21 57 0 0 chr1 50822381 50822416 -146373016 + AT_rich Low_complexity Low_complexity 1 35 0 4 972 1975 165 34 105 chr1 50823366 50823805 -146371627 - Lx LINE L1 -196 6458 6051 4 972 4089 159 14 0 chr1 50823792 50824456 -146370976 + L1_Mur2 LINE L1 4054 4727 -1150 4 972 207 0 0 0 chr1 50824456 50824479 -146370953 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 972 4089 159 14 0 chr1 50824479 50824537 -146370895 + L1_Mur2 LINE L1 4728 4785 -1092 4 972 322 274 78 26 chr1 50824545 50824661 -146370771 - MLT1D LTR MaLR -320 185 64 4 972 535 363 39 21 chr1 50825188 50825472 -146369960 - B4A SINE B4 -2 290 2 4 972 22 35 0 0 chr1 50825736 50825765 -146369667 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 674 334 97 30 chr1 50825836 50826240 -146369192 - MT2A LTR ERVL -102 431 1 4 972 24 32 0 0 chr1 50826494 50826525 -146368907 + AT_rich Low_complexity Low_complexity 1 31 0 4 972 4908 136 85 1 chr1 50827796 50828629 -146366803 + L1Md_F LINE L1 237 1139 -5380 4 972 7068 98 0 22 chr1 50832986 50833565 -146361867 + L1Md_F2 LINE L1 5588 6166 -416 4 972 1994 145 3 3 chr1 50833565 50833876 -146361556 + RLTR10E LTR ERVK 1 311 0 4 972 7068 98 0 22 chr1 50833876 50834304 -146361128 + L1Md_F2 LINE L1 6167 6573 -9 4 972 339 25 0 0 chr1 50834560 50834600 -146360832 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 972 505 324 60 14 chr1 50834758 50834974 -146360458 + LTR40b LTR ERVL 16 241 -221 4 972 473 237 18 43 chr1 50834974 50835164 -146360268 + Lx3C LINE L1 673 753 -6231 4 972 19150 144 63 35 chr1 50835209 50840251 -146355181 + Lx3C LINE L1 1793 6974 -2 4 972 384 138 0 0 chr1 50840266 50840331 -146355101 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 972 1092 91 0 0 chr1 50840331 50840485 -146354947 + (GGAAA)n Simple_repeat Simple_repeat 2 155 0 4 972 2748 174 59 2 chr1 50840563 50841087 -146354345 - Lx LINE L1 -5 6649 6096 4 972 3851 172 37 0 chr1 50841109 50841811 -146353621 - L1_Mm LINE L1 0 5883 5156 4 972 1646 179 16 3 chr1 50841812 50842121 -146353311 + L1_Mm LINE L1 4795 5107 -776 4 972 6278 132 1 4 chr1 50842119 50843118 -146352314 - L1_Mm LINE L1 -370 5513 4518 4 972 547 117 0 0 chr1 50843117 50843194 -146352238 + L1_Mur2 LINE L1 5103 5179 -698 4 972 849 304 113 32 chr1 50843737 50844145 -146351287 - Lx7 LINE L1 -348 7348 6908 4 972 217 236 27 14 chr1 50844145 50844218 -146351214 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 4 972 644 283 147 41 chr1 50845617 50846059 -146349373 - L1_Rod LINE L1 0 5847 5386 4 972 259 274 104 150 chr1 50846242 50846332 -146349100 - MER67C LTR ERV1 -413 298 229 4 972 576 244 216 0 chr1 50846332 50846508 -146348924 - B3 SINE B2 -1 215 2 4 972 259 274 104 150 chr1 50846508 50846610 -146348822 - MER67C LTR ERV1 -483 228 115 4 972 2806 76 0 0 chr1 50846622 50846989 -146348443 + L1Md_F2 LINE L1 5703 6069 -513 4 972 1747 148 29 22 chr1 50846991 50847302 -146348130 + L1Md_F2 LINE L1 6258 6570 -12 4 972 618 14 0 0 chr1 50847307 50847378 -146348054 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 4 972 315 49 0 0 chr1 50848580 50848621 -146346811 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 972 288 0 0 0 chr1 50848621 50848652 -146346780 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 972 501 97 0 0 chr1 50848652 50848724 -146346708 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 972 310 85 17 17 chr1 50848724 50848784 -146346648 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 972 1152 242 68 25 chr1 50848829 50849151 -146346281 - ORR1D1 LTR MaLR -2 372 37 4 972 570 281 71 10 chr1 50849732 50849930 -146345502 + B3 SINE B2 1 210 -6 4 972 24 0 0 0 chr1 50850705 50850729 -146344703 + AT_rich Low_complexity Low_complexity 1 24 0 4 972 523 295 94 94 chr1 50851610 50851823 -146343609 - B3A SINE B2 -1 215 3 4 972 369 0 0 0 chr1 50851855 50851896 -146343536 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 972 489 34 0 0 chr1 50851897 50851956 -146343476 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 972 396 0 0 0 chr1 50852132 50852176 -146343256 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 972 1097 82 0 14 chr1 50852634 50852782 -146342650 + B1_Mus1 SINE Alu 2 147 -1 4 972 806 102 8 0 chr1 50853072 50853199 -146342233 + (TG)n Simple_repeat Simple_repeat 1 128 0 4 972 270 0 0 0 chr1 50854158 50854188 -146341244 + (GGA)n Simple_repeat Simple_repeat 2 31 0 4 972 23 54 0 0 chr1 50854838 50854875 -146340557 + AT_rich Low_complexity Low_complexity 1 37 0 4 972 721 318 133 44 chr1 50854918 50855721 -146339711 - Charlie5 DNA MER1_type -514 2110 1236 4 121 441 0 0 0 chr1 50855924 50855973 -146339459 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 973 24 0 0 0 chr1 50856542 50856566 -146338866 + AT_rich Low_complexity Low_complexity 1 24 0 4 973 757 243 133 62 chr1 50856643 50856981 -146338451 - RLTR9A LTR ERVK 0 368 7 4 973 207 0 0 0 chr1 50857044 50857067 -146338365 + (A)n Simple_repeat Simple_repeat 1 23 0 4 973 221 30 0 57 chr1 50857181 50857216 -146338216 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 4 973 297 51 0 0 chr1 50857451 50857490 -146337942 + (CAA)n Simple_repeat Simple_repeat 3 41 0 4 973 363 250 36 36 chr1 50858181 50858293 -146337139 + B3 SINE B2 4 115 -83 4 973 303 93 0 0 chr1 50858874 50858917 -146336515 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 973 273 393 52 7 chr1 50859009 50859145 -146336287 - B1F SINE Alu -7 142 1 4 973 332 252 169 42 chr1 50859242 50859408 -146336024 - ORR1E LTR MaLR -7 352 166 5 973 1431 264 58 37 chr1 50859435 50859864 -146335568 + MT2A LTR ERVL 2 439 -94 5 973 180 0 0 0 chr1 50861514 50861534 -146333898 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 5 973 441 0 0 0 chr1 50861694 50861743 -146333689 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 973 332 324 92 60 chr1 50862001 50862150 -146333282 + B4A SINE B4 53 198 -94 5 973 2426 71 71 0 chr1 50862150 50862473 -146332959 - ORR1A1 LTR MaLR 0 346 1 5 973 332 324 92 60 chr1 50862473 50862540 -146332892 + B4A SINE B4 199 276 -16 5 973 180 163 0 0 chr1 50863102 50863145 -146332287 + A-rich Low_complexity Low_complexity 1 43 0 5 973 186 265 0 39 chr1 50863798 50863849 -146331583 - L3 LINE CR1 -3418 1071 1023 5 973 280 296 17 25 chr1 50864123 50864241 -146331191 + L1M5 LINE L1 5550 5666 -458 5 973 248 377 28 35 chr1 50864494 50864637 -146330795 + RSINE1 SINE B4 3 144 -21 5 973 222 159 29 14 chr1 50864792 50864862 -146330570 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 973 21 0 0 0 chr1 50864896 50864917 -146330515 + AT_rich Low_complexity Low_complexity 1 21 0 5 973 210 71 0 0 chr1 50866101 50866129 -146329303 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 5 973 243 22 109 0 chr1 50866198 50866244 -146329188 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 5 973 454 170 5 0 chr1 50866662 50866745 -146328687 - L1_Mm LINE L1 -317 5566 5476 5 973 1454 211 60 13 chr1 50867938 50868240 -146327192 - ORR1B2 LTR MaLR 0 367 52 5 973 2846 237 16 25 chr1 50868280 50869123 -146326309 + ORR1B2-int LTR MaLR 14 970 -610 5 973 585 245 182 53 chr1 50869126 50869389 -146326043 + RLTR10A LTR ERVK 115 411 0 5 973 363 240 55 55 chr1 50869405 50869515 -146325917 + RLTR10-int LTR ERVK 319 428 -1559 5 973 353 267 46 46 chr1 50869716 50869869 -146325563 + IAP-d-int LTR ERVK 2241 2393 -4149 5 973 1988 318 58 45 chr1 50869919 50871433 -146323999 + IAP-d-int LTR ERVK 3342 5192 -2389 5 973 4471 60 0 0 chr1 50871433 50871999 -146323433 + L1Md_F2 LINE L1 6005 6570 -12 5 973 1988 263 37 53 chr1 50871999 50873000 -146322432 + IAP-d-int LTR ERVK 4792 5194 -1348 5 973 511 259 183 50 chr1 50873040 50873280 -146322152 + RLTR10A LTR ERVK 140 411 0 5 973 2794 185 39 9 chr1 50873280 50873815 -146321617 + ORR1B2-int LTR MaLR 959 1509 0 5 973 1632 211 52 12 chr1 50873815 50874160 -146321272 + ORR1B2 LTR MaLR 1 359 -8 5 973 490 330 86 35 chr1 50874174 50874499 -146320933 + MLT1A0 LTR MaLR 1 351 -23 5 973 432 82 0 0 chr1 50874778 50874839 -146320593 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 973 791 232 163 40 chr1 50875050 50875351 -146320081 + RLTR28B LTR ERVL 2 339 -142 5 973 21 0 0 0 chr1 50875549 50875570 -146319862 + AT_rich Low_complexity Low_complexity 1 21 0 5 973 521 222 15 13 chr1 50875660 50875775 -146319657 + B1F SINE Alu 9 124 -3 5 973 261 337 92 54 chr1 50875775 50875840 -146319592 + B4A SINE B4 94 280 -12 5 973 2265 261 66 70 chr1 50875912 50875934 -146319498 - MTD-int LTR MaLR -472 786 767 5 973 1031 109 0 0 chr1 50875934 50876071 -146319361 - B1_Mus1 SINE Alu -11 137 1 5 973 2265 261 66 70 chr1 50876071 50876837 -146318595 - MTD-int LTR MaLR -492 766 1 5 973 538 233 60 20 chr1 50876837 50876986 -146318446 - MTD LTR MaLR 0 419 265 5 973 2077 218 89 10 chr1 50877141 50877659 -146317773 + RLTR12A LTR ERVK 1 559 -9 5 973 537 312 59 5 chr1 50879095 50879298 -146316134 + B3 SINE B2 1 214 -2 5 973 186 43 0 0 chr1 50879407 50879430 -146316002 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 973 249 222 0 18 chr1 50879444 50879499 -146315933 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 973 482 0 17 0 chr1 50879972 50880030 -146315402 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 973 453 401 6 0 chr1 50880143 50880305 -146315127 + RSINE1 SINE B4 3 165 0 5 973 1317 280 30 41 chr1 50880573 50880967 -146314465 - L1_Mur3 LINE L1 -7013 699 310 5 973 7463 201 63 105 chr1 50880991 50881420 -146314012 + L1_Mur3 LINE L1 1805 2216 -3664 5 973 198 0 0 0 chr1 50881420 50881442 -146313990 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 5 973 7463 201 63 105 chr1 50881442 50882357 -146313075 + L1_Mur3 LINE L1 2217 3199 -2681 5 973 523 276 6 49 chr1 50882357 50882495 -146312937 + RLTR31_Mur LTR ERVK 395 527 -26 5 973 252 0 0 0 chr1 50882495 50882523 -146312909 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 973 523 276 6 49 chr1 50882523 50882548 -146312884 + RLTR31_Mur LTR ERVK 528 550 -3 5 973 7463 201 63 105 chr1 50882548 50883557 -146311875 + L1_Mur3 LINE L1 3200 4217 -1663 5 973 2377 258 23 117 chr1 50883616 50884604 -146310828 + Lx7 LINE L1 6633 7527 -169 5 973 182 37 37 0 chr1 50884604 50884631 -146310801 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 5 973 771 227 43 62 chr1 50884636 50884894 -146310538 + Lx7 LINE L1 7443 7695 -1 5 973 202 333 0 0 chr1 50885021 50885078 -146310354 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 973 675 342 64 4 chr1 50885087 50885354 -146310078 - B4A SINE B4 -8 284 2 5 973 536 126 72 0 chr1 50886063 50886174 -146309258 - Lx LINE L1 -4 6650 6532 5 973 2326 88 0 0 chr1 50886178 50886498 -146308934 - Lx LINE L1 -574 6080 5761 5 973 384 357 0 15 chr1 50888479 50888610 -146306822 + B1F1 SINE Alu 9 137 -12 5 973 1004 221 15 10 chr1 50888639 50888840 -146306592 - B3 SINE B2 -5 211 10 5 973 500 323 94 41 chr1 50888893 50888904 -146306528 - B3 SINE B2 -33 183 174 5 973 315 0 0 0 chr1 50888904 50888939 -146306493 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 973 561 302 97 6 chr1 50888939 50889098 -146306334 - B3A SINE B2 -43 173 4 5 973 22 0 0 0 chr1 50889155 50889177 -146306255 + AT_rich Low_complexity Low_complexity 1 22 0 5 973 405 306 42 52 chr1 50889871 50890064 -146305368 - MT2A LTR ERVL -133 400 210 5 973 1682 224 45 134 chr1 50890075 50890678 -146304754 - RMER20B LTR ERVK -69 558 10 5 973 335 295 57 0 chr1 50891428 50891533 -146303899 + ID_B1 SINE B4 111 221 -3 5 973 530 293 56 38 chr1 50891577 50891790 -146303642 - RMER15 LTR ERVL -16 559 343 5 973 512 296 122 23 chr1 50891944 50892165 -146303267 - MLT1A LTR MaLR -1 373 131 5 973 35 63 0 0 chr1 50892482 50892545 -146302887 + AT_rich Low_complexity Low_complexity 1 63 0 5 973 36 23 0 0 chr1 50894874 50894917 -146300515 + AT_rich Low_complexity Low_complexity 1 43 0 5 973 26 0 0 0 chr1 50895011 50895037 -146300395 + AT_rich Low_complexity Low_complexity 1 26 0 5 973 243 0 0 0 chr1 50895178 50895205 -146300227 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 973 541 306 0 39 chr1 50895222 50895375 -146300057 - RSINE1 SINE B4 -17 148 2 5 973 457 314 51 41 chr1 50895579 50895775 -146299657 + MLT2B1 LTR ERVL 1 198 -322 5 973 588 310 44 10 chr1 50895908 50896113 -146299319 + B3 SINE B2 5 216 0 5 973 1716 153 19 61 chr1 50896200 50896562 -146298870 + Lx LINE L1 6308 6654 0 5 973 641 262 14 9 chr1 50897017 50897229 -146298203 + Lx9 LINE L1 7304 7516 -128 5 973 281 292 35 0 chr1 50897222 50897366 -146298066 + Lx9 LINE L1 7478 7626 -18 5 973 480 283 42 0 chr1 50897962 50898082 -146297350 - ORR1C2 LTR MaLR -89 295 171 5 973 413 111 0 24 chr1 50898085 50898168 -146297264 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 5 973 781 221 11 52 chr1 50898168 50898199 -146297233 - ORR1C2 LTR MaLR -189 195 171 5 973 219 69 0 0 chr1 50898199 50898228 -146297204 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 5 973 781 221 11 52 chr1 50898228 50898387 -146297045 - ORR1C2 LTR MaLR -214 170 13 5 973 4303 222 69 19 chr1 50898387 50899456 -146295976 + Lx6 LINE L1 5670 6792 -668 5 973 330 152 0 0 chr1 50900654 50900713 -146294719 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 973 297 305 0 21 chr1 50900722 50900819 -146294613 + (TATG)n Simple_repeat Simple_repeat 2 96 0 5 973 244 250 40 75 chr1 50900819 50900992 -146294440 + RLTR21 LTR ERVK 1090 1256 -316 5 973 750 356 48 15 chr1 50900970 50901241 -146294191 - B4 SINE B4 -2 290 11 5 973 301 328 25 80 chr1 50901267 50901445 -146293987 + MLT2B1 LTR ERVL 225 544 -19 5 973 268 162 98 24 chr1 50901628 50901710 -146293722 + Lx9 LINE L1 7521 7608 -36 5 973 22 0 0 0 chr1 50901732 50901754 -146293678 + AT_rich Low_complexity Low_complexity 1 22 0 5 973 1251 240 68 3 chr1 50902520 50902837 -146292595 - ORR1D1 LTR MaLR 0 374 45 5 973 531 0 0 0 chr1 50902837 50902896 -146292536 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 973 1251 240 68 3 chr1 50902896 50902929 -146292503 - ORR1D1 LTR MaLR -330 44 3 5 973 267 342 25 17 chr1 50903610 50903729 -146291703 + MER103 DNA DNA 16 135 -31 5 973 8054 46 1 5 chr1 50904761 50905802 -146289630 - L1Md_F2 LINE L1 -1 6581 5547 5 973 318 50 0 0 chr1 50906458 50906498 -146288934 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 973 630 204 0 23 chr1 50906498 50906674 -146288758 + CT-rich Low_complexity Low_complexity 4 175 0 5 973 298 274 0 16 chr1 50906687 50906750 -146288682 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 5 973 299 326 152 10 chr1 50906945 50907143 -146288289 - L2 LINE L2 -581 2838 2613 5 973 2495 300 66 8 chr1 50907641 50908549 -146286883 + RCHARR1 DNA MER1_type 3 963 -11 5 973 349 286 14 149 chr1 50908561 50908708 -146286724 - Lx8 LINE L1 -157 7316 7196 5 973 3096 137 25 18 chr1 50908708 50909219 -146286213 + Lx LINE L1 6136 6650 -4 5 973 349 286 14 149 chr1 50909219 50909293 -146286139 - Lx8 LINE L1 -278 7195 7125 5 973 389 295 105 0 chr1 50909663 50909768 -146285664 - PB1D10 SINE Alu -1 116 1 5 973 229 330 44 33 chr1 50909694 50909785 -146285647 - MT2B2 LTR ERVL -342 242 151 5 973 1381 249 167 26 chr1 50910879 50911341 -146284091 + RMER15 LTR ERVL 29 555 -20 5 973 503 286 0 40 chr1 50911614 50911738 -146283694 - B1_Mur1 SINE Alu -22 127 9 5 973 243 420 8 8 chr1 50911626 50911758 -146283674 - B4 SINE B4 -88 204 73 5 973 631 185 48 0 chr1 50911935 50912081 -146283351 - Lx3C LINE L1 -3 6973 6821 5 973 1210 132 0 30 chr1 50912081 50912284 -146283148 + Lx3B LINE L1 5660 5856 -1117 5 973 740 150 0 0 chr1 50912282 50912395 -146283037 + Lx3B LINE L1 6720 6832 -144 5 973 3492 89 4 39 chr1 50912393 50912930 -146282502 + L1_Mur1 LINE L1 4887 5404 -482 5 973 254 327 38 19 chr1 50912977 50913083 -146282349 + MLT1N2 LTR MaLR 404 511 -51 5 973 1483 109 9 5 chr1 50913093 50913315 -146282117 + L1_Mus3 LINE L1 6409 6631 -7 5 973 264 410 14 0 chr1 50913461 50913605 -146281827 + Charlie10a DNA MER1_type 79 224 -56 5 973 9789 12 0 1 chr1 50913751 50914863 -146280569 - L1_Mm LINE L1 0 5883 4773 5 973 2245 46 4 0 chr1 50914863 50915143 -146280289 + L1Md_A LINE L1 6301 6581 -1 5 973 629 140 0 0 chr1 50915151 50915265 -146280167 + RCHARR1 DNA MER1_type 745 858 -116 6 973 227 220 54 11 chr1 50916261 50916353 -146279079 + CT-rich Low_complexity Low_complexity 1 96 0 6 973 21 0 0 0 chr1 50916447 50916468 -146278964 + AT_rich Low_complexity Low_complexity 1 21 0 6 973 439 179 57 0 chr1 50916676 50916799 -146278633 + Lx3B LINE L1 6839 6968 -5 6 973 212 65 0 132 chr1 50916839 50916892 -146278540 + T-rich Low_complexity Low_complexity 3 48 0 6 973 523 289 82 22 chr1 50917883 50918067 -146277365 + B4A SINE B4 25 219 -73 6 973 357 182 80 0 chr1 50918121 50918209 -146277223 + Lx9 LINE L1 7542 7636 -8 6 973 288 0 0 0 chr1 50919343 50919375 -146276057 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 973 3163 94 37 4 chr1 50919561 50920019 -146275413 - L1_Mus1 LINE L1 -12 6570 6098 6 973 3562 76 10 2 chr1 50920020 50920509 -146274923 + L1_Mm LINE L1 2328 2820 -3063 6 973 285 161 24 24 chr1 50921148 50921231 -146274201 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 6 973 360 0 0 0 chr1 50921994 50922034 -146273398 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 973 1681 161 20 0 chr1 50923718 50924017 -146271415 - L1_Mm LINE L1 -643 5240 4936 6 973 3484 71 0 0 chr1 50924027 50924528 -146270904 - L1_Mus1 LINE L1 -537 6030 5530 6 973 4165 78 5 0 chr1 50924528 50925080 -146270352 + L1_Mus1 LINE L1 6012 6566 -1 6 973 491 90 13 0 chr1 50925369 50925447 -146269985 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 973 28 48 0 0 chr1 50927976 50928018 -146267414 + AT_rich Low_complexity Low_complexity 1 42 0 6 973 6892 106 77 23 chr1 50928775 50929900 -146265532 - Lx3B LINE L1 -4 6969 5784 6 973 292 361 115 0 chr1 50931099 50931221 -146264211 - RSINE1 SINE B4 -15 150 15 6 973 7805 124 13 0 chr1 50931389 50932573 -146262859 - Lx2 LINE L1 -1 6996 5798 6 973 39397 29 1 7 chr1 50932573 50938785 -146256647 - L1Md_A LINE L1 -2 6580 407 6 973 2232 121 0 0 chr1 50938782 50939104 -146256328 - L1_Mm LINE L1 -78 5805 5484 6 973 200 359 165 8 chr1 50939409 50939645 -146255787 + L3b LINE CR1 1 273 -209 6 973 3672 81 37 2 chr1 50939974 50940482 -146254950 + L1_Mus3 LINE L1 6107 6632 -6 6 973 522 86 0 21 chr1 50940916 50941011 -146254421 + L1Md_F2 LINE L1 6467 6559 -23 6 973 261 0 0 0 chr1 50941012 50941041 -146254391 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 973 245 351 51 44 chr1 50941173 50941331 -146254101 - MER57C2 LTR ERV1 -275 159 1 6 973 236 340 32 0 chr1 50941596 50941690 -146253742 - MER3 DNA MER1_type -112 97 1 6 973 2815 240 77 1 chr1 50942749 50943401 -146252031 + Lx6 LINE L1 6759 7459 -1 6 973 204 97 0 0 chr1 50943485 50943516 -146251916 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 973 351 0 0 0 chr1 50943516 50943554 -146251878 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 973 2651 160 56 40 chr1 50943886 50944438 -146250994 - RLTR31_Mm LTR ERVK 0 561 1 6 973 274 261 0 14 chr1 50944915 50944985 -146250447 - LTR90B LTR LTR 0 796 728 6 973 247 103 33 49 chr1 50945359 50945420 -146250012 + T-rich Low_complexity Low_complexity 2 61 0 6 973 3764 44 0 2 chr1 50946293 50946752 -146248680 - L1Md_F3 LINE L1 -1 6583 6126 6 973 180 265 0 20 chr1 50946965 50947015 -146248417 + MIRb SINE MIR 50 98 -170 6 973 533 258 37 75 chr1 50947220 50947434 -146247998 - RMER1B Other Other -42 1024 819 6 973 732 124 25 0 chr1 50947505 50947626 -146247806 - Lx2 LINE L1 -2 6995 6872 6 973 1484 128 103 28 chr1 50947631 50947913 -146247519 + Lx LINE L1 6352 6654 0 6 973 7552 173 29 8 chr1 50947926 50949540 -146245892 + Lx2B LINE L1 5355 7000 0 6 973 1133 272 28 105 chr1 50950259 50950649 -146244783 + MTE2b LTR MaLR 2 361 -18 6 973 191 36 0 35 chr1 50951391 50951420 -146244012 + (TTGG)n Simple_repeat Simple_repeat 3 30 0 6 973 828 177 21 0 chr1 50952753 50952985 -146242447 + CT-rich Low_complexity Low_complexity 1 236 0 6 973 190 339 93 39 chr1 50954011 50954140 -146241292 + MIRb SINE MIR 35 170 -98 6 973 692 123 21 71 chr1 50955664 50955804 -146239628 + MERVL_2A-int LTR ERVL 5619 5751 -10 6 973 1234 202 163 118 chr1 50955813 50956323 -146239109 + MT2A LTR ERVL 1 533 0 6 973 27 0 0 0 chr1 50956335 50956362 -146239070 + AT_rich Low_complexity Low_complexity 1 27 0 6 973 29 28 0 0 chr1 50956381 50956417 -146239015 + AT_rich Low_complexity Low_complexity 1 36 0 6 973 2570 165 102 28 chr1 50956692 50957232 -146238200 + RMER6C LTR ERVK 1 580 -110 6 973 792 207 98 63 chr1 50957232 50957567 -146237865 + RLTR10D LTR ERVK 1 347 -12 6 973 676 155 26 0 chr1 50957571 50957687 -146237745 + RMER6C LTR ERVK 567 685 -5 6 973 185 419 0 0 chr1 50957985 50958078 -146237354 - MIR SINE MIR -122 140 48 6 973 1440 173 384 23 chr1 50958402 50959061 -146236371 - RMER6C LTR ERVK -23 733 1 6 973 669 191 21 7 chr1 50959128 50959148 -146236284 - B1_Mur4 SINE Alu -5 145 127 6 973 2645 73 6 3 chr1 50959148 50959504 -146235928 - L1_Mus1 LINE L1 0 6567 6211 6 973 702 165 8 0 chr1 50959504 50959625 -146235807 - B1_Mus1 SINE Alu -25 123 2 6 973 1285 69 23 6 chr1 50959969 50960144 -146235288 + B2_Mm2 SINE B2 4 181 -14 6 973 3847 115 11 2 chr1 50960531 50961089 -146234343 - L1_Mus3 LINE L1 -5 6633 6071 6 973 220 274 36 0 chr1 50961102 50961186 -146234246 + CT-rich Low_complexity Low_complexity 1 87 0 6 973 411 145 0 0 chr1 50961205 50961274 -146234158 + (TTC)n Simple_repeat Simple_repeat 3 71 0 6 973 626 133 0 9 chr1 50961271 50961385 -146234047 + (TC)n Simple_repeat Simple_repeat 2 114 0 6 973 258 32 0 0 chr1 50961439 50961470 -146233962 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 973 380 245 37 6 chr1 50961522 50961648 -146233784 - Lx9 LINE L1 -491 7153 7049 6 973 463 329 0 0 chr1 50961646 50961786 -146233646 - Lx5 LINE L1 -33 7017 6878 6 973 1089 267 247 21 chr1 50961784 50961843 -146233589 + Lx5 LINE L1 6675 6733 -727 6 973 531 0 0 0 chr1 50961843 50961902 -146233530 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 973 1633 267 247 21 chr1 50961902 50962328 -146233104 + Lx5 LINE L1 6458 7269 -191 6 973 667 338 45 11 chr1 50962485 50962772 -146232660 + MLT1A0 LTR MaLR 3 299 -66 6 973 198 0 0 0 chr1 50962772 50962794 -146232638 + (A)n Simple_repeat Simple_repeat 1 22 0 6 973 307 309 2 0 chr1 50963354 50963456 -146231976 - Lx5 LINE L1 -167 6883 6799 6 973 378 0 0 0 chr1 50963782 50963824 -146231608 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 973 520 84 32 0 chr1 50963824 50963919 -146231513 + (CAGAGA)n Simple_repeat Simple_repeat 2 99 0 6 973 229 325 52 60 chr1 50964786 50964920 -146230512 - B1_Mur2 SINE Alu -16 133 1 6 973 402 252 0 93 chr1 50964803 50964921 -146230511 - ID_B1 SINE B4 -37 187 81 6 973 5089 146 58 16 chr1 50966118 50967083 -146228349 + MusHAL1 LINE L1 868 1873 -839 6 973 4201 181 70 17 chr1 50967073 50968662 -146226770 + Lx3C LINE L1 5165 6965 -11 6 973 263 314 44 89 chr1 50969045 50969248 -146226184 - B3A SINE B2 0 198 5 6 973 459 0 0 0 chr1 50969767 50969818 -146225614 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 973 708 150 19 0 chr1 50970810 50970970 -146224462 + (TG)n Simple_repeat Simple_repeat 2 164 0 6 973 216 97 0 0 chr1 50970970 50971001 -146224431 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 973 821 352 26 4 chr1 50971003 50971268 -146224164 - B4A SINE B4 -14 278 8 6 973 34 24 0 0 chr1 50971647 50971688 -146223744 + AT_rich Low_complexity Low_complexity 1 41 0 6 973 799 264 122 40 chr1 50973171 50973467 -146221965 + MTC LTR MaLR 1 320 -101 6 973 724 212 20 14 chr1 50973467 50973615 -146221817 + MERVK26-int LTR ERVK 6767 6915 -4 6 973 1637 209 80 41 chr1 50973617 50974184 -146221248 + RMER20A LTR ERVK 1 579 -48 6 973 857 171 152 11 chr1 50974423 50974600 -146220832 + MTC LTR MaLR 220 421 0 6 973 22 35 0 0 chr1 50974647 50974676 -146220756 + AT_rich Low_complexity Low_complexity 1 29 0 6 973 251 373 28 50 chr1 50974751 50974892 -146220540 + B1F1 SINE Alu 3 140 -9 6 973 24 77 0 0 chr1 50975570 50975622 -146219810 + AT_rich Low_complexity Low_complexity 1 52 0 6 973 306 0 0 0 chr1 50976598 50976632 -146218800 + (A)n Simple_repeat Simple_repeat 1 34 0 6 973 204 284 51 51 chr1 50978842 50978920 -146216512 - MIRb SINE MIR -63 205 128 6 973 696 24 0 0 chr1 50978922 50979004 -146216428 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 973 1244 204 72 3 chr1 50979268 50979558 -146215874 + Lx9 LINE L1 6972 7281 -363 6 973 970 129 7 0 chr1 50979562 50979709 -146215723 + B1_Mus1 SINE Alu 1 148 0 6 973 738 219 96 16 chr1 50979729 50979980 -146215452 + Lx9 LINE L1 7247 7517 -127 6 973 463 151 50 16 chr1 50980174 50980295 -146215137 + Lx9 LINE L1 7512 7636 -8 6 973 448 327 25 38 chr1 50980325 50980484 -146214948 + RSINE1 SINE B4 3 159 -6 6 973 216 97 0 0 chr1 50980977 50981008 -146214424 + (TCC)n Simple_repeat Simple_repeat 3 33 0 6 973 265 301 40 14 chr1 50981083 50981157 -146214275 - ID4 SINE ID -5 78 3 6 973 241 261 130 8 chr1 50981186 50981317 -146214115 + Lx9 LINE L1 7498 7644 0 6 973 219 200 22 0 chr1 50982991 50983036 -146212396 + GA-rich Low_complexity Low_complexity 1 46 0 6 973 198 0 0 0 chr1 50985261 50985283 -146210149 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 973 603 24 35 0 chr1 50985463 50985548 -146209884 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 973 395 106 0 15 chr1 50985548 50985615 -146209817 + (TCCCC)n Simple_repeat Simple_repeat 1 66 0 6 973 352 319 15 0 chr1 50985617 50985752 -146209680 + CT-rich Low_complexity Low_complexity 2 138 0 6 974 21 0 0 0 chr1 50987874 50987895 -146207537 + AT_rich Low_complexity Low_complexity 1 21 0 6 974 349 268 12 0 chr1 50989836 50989918 -146205514 - ID4 SINE ID 0 83 1 6 974 411 301 54 86 chr1 50990832 50991068 -146204364 - MLT1G1 LTR MaLR -185 410 162 7 974 232 258 65 0 chr1 50991268 50991330 -146204102 - MIRm SINE MIR -2 274 209 7 974 22 0 0 0 chr1 50993275 50993297 -146202135 + AT_rich Low_complexity Low_complexity 1 22 0 7 974 1065 292 14 48 chr1 50993384 50993679 -146201753 + B4A SINE B4 8 292 0 7 974 194 82 63 32 chr1 50995243 50995306 -146200126 + A-rich Low_complexity Low_complexity 2 66 0 7 974 306 132 0 0 chr1 50995800 50995853 -146199579 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 7 974 293 118 0 19 chr1 50995922 50995974 -146199458 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 7 974 324 271 14 7 chr1 50998557 50998702 -146196730 + (TA)n Simple_repeat Simple_repeat 2 147 0 7 974 257 310 138 0 chr1 50999849 50999936 -146195496 + PB1D10 SINE Alu 10 108 -9 7 974 22 35 0 0 chr1 51000396 51000425 -146195007 + AT_rich Low_complexity Low_complexity 1 29 0 1 974 456 226 19 9 chr1 51000633 51000740 -146194692 - B1_Mur1 SINE Alu 0 149 42 2 974 429 329 7 28 chr1 51002197 51002341 -146193091 - B1F SINE Alu -7 142 2 3 974 765 184 189 0 chr1 51002403 51002588 -146192844 - URR1B DNA MER1_type -4 221 2 4 974 21 0 0 0 chr1 51003150 51003171 -146192261 + AT_rich Low_complexity Low_complexity 1 21 0 5 974 264 320 71 4 chr1 51004377 51004487 -146190945 - PB1D10 SINE Alu 0 117 2 6 974 2698 82 21 0 chr1 51004487 51004863 -146190569 + L1_Mus3 LINE L1 6248 6631 -7 7 974 380 277 159 9 chr1 51006602 51006715 -146188717 + B1F1 SINE Alu 3 132 -17 8 974 206 163 0 23 chr1 51007529 51007573 -146187859 + CT-rich Low_complexity Low_complexity 2 44 0 9 974 288 412 62 36 chr1 51007785 51008009 -146187423 - LTR16A LTR ERVL -33 418 189 1 974 232 231 15 0 chr1 51008078 51008208 -146187224 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 974 28 29 0 0 chr1 51008409 51008444 -146186988 + AT_rich Low_complexity Low_complexity 1 35 0 1 974 291 12 12 0 chr1 51009548 51009595 -146185837 + L1Md_F2 LINE L1 6531 6580 -4 1 974 296 353 59 42 chr1 51009688 51009975 -146185457 + L2 LINE L2 2655 2946 -473 1 974 21 0 0 0 chr1 51010207 51010228 -146185204 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 391 157 22 0 chr1 51010229 51010318 -146185114 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 974 1388 213 10 88 chr1 51010357 51010775 -146184657 - RMER17C LTR ERVK -23 387 3 1 974 268 192 30 20 chr1 51010798 51010899 -146184533 + (TA)n Simple_repeat Simple_repeat 1 102 0 1 974 582 15 0 0 chr1 51010899 51010966 -146184466 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 974 573 329 6 26 chr1 51010984 51011140 -146184292 - RSINE1 SINE B4 -4 161 9 2 974 462 18 0 0 chr1 51011153 51011208 -146184224 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 974 206 118 0 0 chr1 51013127 51013161 -146182271 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 974 840 105 14 7 chr1 51013572 51013716 -146181716 + (TC)n Simple_repeat Simple_repeat 2 146 0 2 974 264 252 43 36 chr1 51014289 51014429 -146181003 - Lx6 LINE L1 -9 7451 7311 2 974 1212 240 76 54 chr1 51014416 51014839 -146180593 - Lx7 LINE L1 -202 7494 7063 2 974 237 304 25 10 chr1 51014842 51014956 -146180476 + B1F1 SINE Alu 1 117 0 2 974 392 230 20 20 chr1 51015651 51015753 -146179679 - Lx7 LINE L1 -519 7177 7076 2 974 462 271 96 38 chr1 51015766 51015923 -146179509 - B4A SINE B4 0 292 127 2 974 1800 112 31 22 chr1 51016255 51016574 -146178858 - RLTRETN_Mm LTR ERVK 0 322 1 2 974 806 242 179 74 chr1 51017321 51017633 -146177799 + ORR1D2 LTR MaLR 26 370 0 3 974 363 255 46 215 chr1 51020225 51020620 -146174812 - Tigger10 DNA Tigger -554 1289 962 3 974 392 213 260 0 chr1 51023271 51023398 -146172034 + ID_B1 SINE B4 2 161 -63 3 974 660 305 89 58 chr1 51023408 51023782 -146171650 + MTE2a LTR MaLR 7 392 -15 3 974 250 175 0 0 chr1 51024097 51024154 -146171278 + Lx7 LINE L1 7359 7415 -281 3 974 408 67 0 0 chr1 51024156 51024216 -146171216 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 974 286 276 37 28 chr1 51024242 51024350 -146171082 + Lx6 LINE L1 7313 7421 -39 3 974 189 0 0 0 chr1 51024585 51024606 -146170826 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 974 557 91 20 0 chr1 51025105 51025204 -146170228 - Lx2 LINE L1 0 6997 6897 3 974 2555 161 22 171 chr1 51025248 51025341 -146170091 - RLTR20D LTR ERVK 0 568 477 3 974 450 0 0 0 chr1 51025341 51025391 -146170041 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 974 2555 161 22 171 chr1 51025391 51025964 -146169468 - RLTR20D LTR ERVK -92 476 3 3 974 282 292 11 0 chr1 51025997 51026086 -146169346 - PB1D10 SINE Alu -21 96 7 4 974 213 333 0 0 chr1 51026031 51026094 -146169338 - ID_B1 SINE B4 -82 142 80 4 974 21 0 0 0 chr1 51026366 51026387 -146169045 + AT_rich Low_complexity Low_complexity 1 21 0 4 974 185 333 23 11 chr1 51026620 51026708 -146168724 + MIR3 SINE MIR 105 193 -15 4 974 402 388 12 24 chr1 51027237 51027401 -146168031 - RSINE1 SINE B4 0 165 4 4 974 209 33 0 32 chr1 51030232 51030263 -146165169 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 974 230 365 0 51 chr1 51030352 51030450 -146164982 + PB1D10 SINE Alu 1 93 -24 4 974 720 0 0 0 chr1 51030454 51030534 -146164898 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 4 974 203 240 26 26 chr1 51030545 51030622 -146164810 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 4 974 1753 342 42 63 chr1 51030622 51031457 -146163975 + Lx8 LINE L1 6202 7025 -448 4 974 3338 35 2 2 chr1 51031457 51031853 -146163579 + MTA_Mm LTR MaLR 1 396 0 5 974 1753 342 42 63 chr1 51031853 51032118 -146163314 + Lx8 LINE L1 7026 7279 -194 4 974 8718 120 47 2 chr1 51032211 51033889 -146161543 - Lx3C LINE L1 -11 6965 5211 5 974 25 31 0 0 chr1 51036030 51036062 -146159370 + AT_rich Low_complexity Low_complexity 1 32 0 5 974 21 0 0 0 chr1 51036903 51036924 -146158508 + AT_rich Low_complexity Low_complexity 1 21 0 5 974 22 35 0 0 chr1 51036962 51036991 -146158441 + AT_rich Low_complexity Low_complexity 1 29 0 5 974 23 0 0 0 chr1 51038277 51038300 -146157132 + AT_rich Low_complexity Low_complexity 1 23 0 5 974 312 137 0 0 chr1 51039918 51039969 -146155463 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 974 22 0 0 0 chr1 51040198 51040220 -146155212 + AT_rich Low_complexity Low_complexity 1 22 0 5 974 391 202 9 9 chr1 51040277 51040382 -146155050 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 974 236 298 7 90 chr1 51040702 51040846 -146154586 - RMER17D LTR ERVK -519 370 239 5 974 951 306 103 26 chr1 51040848 51041267 -146154165 - Lx6 LINE L1 -30 7430 6980 6 974 227 31 0 30 chr1 51041320 51041353 -146154079 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 974 200 167 62 0 chr1 51041603 51041651 -146153781 + GA-rich Low_complexity Low_complexity 1 51 0 6 974 518 209 8 0 chr1 51042017 51042151 -146153281 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 974 318 247 24 0 chr1 51043555 51043640 -146151792 - Charlie8 DNA MER1_type -2270 158 72 6 974 271 246 144 35 chr1 51044217 51044390 -146151042 - MTEb LTR MaLR -12 367 176 6 974 266 141 28 0 chr1 51044461 51044532 -146150900 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 6 974 203 366 98 15 chr1 51044870 51045075 -146150357 - L3 LINE CR1 -426 4063 3842 6 974 357 283 61 39 chr1 51045290 51045470 -146149962 - L3 LINE CR1 -754 3735 3552 6 974 24 77 0 0 chr1 51046186 51046238 -146149194 + AT_rich Low_complexity Low_complexity 1 52 0 6 974 446 313 105 61 chr1 51046297 51046885 -146148547 - L3 LINE CR1 -1837 2652 2039 6 974 180 0 0 0 chr1 51049262 51049282 -146146150 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 974 487 282 38 8 chr1 51049791 51049923 -146145509 + RSINE1 SINE B4 30 165 0 7 974 207 156 44 0 chr1 51049926 51049971 -146145461 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 7 974 531 287 118 42 chr1 51052266 51052528 -146142904 + B4A SINE B4 1 282 -10 7 974 1637 64 14 9 chr1 51053434 51053655 -146141777 - L1_Mus1 LINE L1 -548 6019 5798 7 974 4585 67 7 2 chr1 51053689 51054269 -146141163 + L1_Mus1 LINE L1 5979 6561 -6 7 974 553 169 153 0 chr1 51054310 51054434 -146140998 + B1_Mur4 SINE Alu 2 144 -6 7 974 26 0 0 0 chr1 51054458 51054484 -146140948 + AT_rich Low_complexity Low_complexity 1 26 0 7 974 259 328 16 70 chr1 51055561 51055689 -146139743 + RMER15 LTR ERVL 302 422 -153 7 974 534 16 0 0 chr1 51058516 51058579 -146136853 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 974 1330 280 49 25 chr1 51059018 51059696 -146135736 + L1MA6 LINE L1 5221 5926 -374 7 974 234 171 0 0 chr1 51059737 51059778 -146135654 + L1M2 LINE L1 5886 5926 -374 8 974 261 170 0 54 chr1 51059778 51059834 -146135598 + L1MA6 LINE L1 5886 5938 -362 8 974 313 300 31 70 chr1 51060329 51060458 -146134974 + RMER10B LTR ERVL 275 398 0 8 974 485 304 228 8 chr1 51060848 51061476 -146133956 + Cheshire DNA MER1_type 1513 2279 -141 8 974 4453 185 44 28 chr1 51061841 51062788 -146132644 - Lx2B LINE L1 -21 6979 6017 8 974 3111 316 91 25 chr1 51062807 51064307 -146131125 + Lx8 LINE L1 5875 7473 0 8 974 254 350 39 0 chr1 51064414 51064517 -146130915 + Cheshire DNA MER1_type 2314 2420 0 8 974 468 136 40 8 chr1 51064811 51064937 -146130495 + (TA)n Simple_repeat Simple_repeat 2 131 0 8 974 456 233 45 50 chr1 51066531 51066730 -146128702 - L1MA9 LINE L1 0 6312 6115 8 974 664 36 0 1 chr1 51066736 51066831 -146128601 - B1_Mur4 SINE Alu 0 150 56 8 974 307 233 21 75 chr1 51066855 51066948 -146128484 + L1M2 LINE L1 5688 5775 -525 8 974 5558 108 24 7 chr1 51066959 51067818 -146127614 - L1_Mur1 LINE L1 -609 5277 4404 9 974 1090 117 0 0 chr1 51067834 51067988 -146127444 + B2_Mm2 SINE B2 8 161 -34 9 974 282 56 0 0 chr1 51067989 51068025 -146127407 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 9 974 1691 136 4 4 chr1 51068028 51068302 -146127130 - L1_Mus4 LINE L1 -2 6634 6361 9 974 1448 142 0 170 chr1 51068304 51068434 -146126998 + L1_Mm LINE L1 4519 4648 -1235 9 974 1163 54 0 13 chr1 51068434 51068583 -146126849 + B1_Mm SINE Alu 1 147 0 9 974 1448 142 0 170 chr1 51068583 51068817 -146126615 + L1_Mm LINE L1 4649 4821 -1062 9 974 441 295 109 33 chr1 51070410 51070822 -146124610 - L1MB3 LINE L1 -10 6164 5698 9 974 2637 149 11 11 chr1 51070871 51071318 -146124114 - Lx2 LINE L1 0 6997 6551 9 974 3353 35 5 0 chr1 51072089 51072483 -146122949 + MTA_Mm LTR MaLR 1 396 0 9 974 363 60 0 0 chr1 51073062 51073112 -146122320 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 974 23 0 0 0 chr1 51074858 51074881 -146120551 + AT_rich Low_complexity Low_complexity 1 23 0 1 974 24 0 0 0 chr1 51074977 51075001 -146120431 + AT_rich Low_complexity Low_complexity 1 24 0 1 974 337 334 147 69 chr1 51075161 51075467 -146119965 + L2 LINE L2 2461 2782 -637 1 974 3740 58 0 121 chr1 51075467 51076060 -146119372 + L1Md_F2 LINE L1 6061 6581 -1 1 974 337 334 147 69 chr1 51076060 51076290 -146119142 + L2 LINE L2 2783 3038 -381 1 974 282 173 0 0 chr1 51076515 51076567 -146118865 + Lx9 LINE L1 7427 7478 -166 1 974 207 0 0 0 chr1 51076567 51076590 -146118842 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 974 2208 111 22 0 chr1 51076592 51076952 -146118480 - Lx2 LINE L1 -1092 5905 5539 1 974 6668 122 31 6 chr1 51076952 51077705 -146117727 + Lx2 LINE L1 5926 6687 -310 1 974 342 0 0 0 chr1 51077705 51077743 -146117689 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 974 6668 122 31 6 chr1 51077743 51078034 -146117398 + Lx2 LINE L1 6688 6996 -1 1 974 25 65 0 0 chr1 51078034 51078080 -146117352 + AT_rich Low_complexity Low_complexity 1 46 0 1 974 530 154 25 8 chr1 51078104 51078222 -146117210 + Lx9 LINE L1 7519 7638 -6 1 974 689 139 8 25 chr1 51078275 51078393 -146117039 + B1_Mur4 SINE Alu 34 149 -1 1 974 279 0 0 0 chr1 51079054 51079085 -146116347 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 974 193 361 68 83 chr1 51079302 51079435 -146115997 - L2 LINE L2 -431 2988 2858 1 974 2319 111 29 0 chr1 51079879 51080223 -146115209 - IAPEY2_LTR LTR ERVK -3 354 1 1 974 3288 88 43 0 chr1 51080523 51080989 -146114443 - Lx3_Mus LINE L1 -6 7003 6518 1 974 3110 106 90 18 chr1 51080993 51081063 -146114369 + Lx3_Mus LINE L1 5965 6034 -975 1 974 588 53 0 0 chr1 51081063 51081139 -146114293 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 1 974 3110 106 90 18 chr1 51081139 51081570 -146113862 + Lx3_Mus LINE L1 6035 6501 -508 1 974 941 178 73 0 chr1 51081793 51081984 -146113448 - Lx2A1 LINE L1 -4 7004 6800 1 974 490 346 52 33 chr1 51082278 51082490 -146112942 + B4A SINE B4 69 284 -8 1 974 27 0 0 0 chr1 51082728 51082755 -146112677 + AT_rich Low_complexity Low_complexity 1 27 0 1 974 785 55 36 0 chr1 51082851 51082961 -146112471 + B1_Mm SINE Alu 33 146 -1 1 974 603 27 0 0 chr1 51083839 51083912 -146111520 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 974 217 259 24 0 chr1 51084340 51084425 -146111007 + A-rich Low_complexity Low_complexity 2 88 0 1 974 21 0 0 0 chr1 51084477 51084498 -146110934 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 223 49 0 47 chr1 51085833 51085876 -146109556 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 974 267 79 0 0 chr1 51085926 51085964 -146109468 + (TTCTCC)n Simple_repeat Simple_repeat 5 42 0 1 974 206 200 0 0 chr1 51085973 51086008 -146109424 + C-rich Low_complexity Low_complexity 1 35 0 1 974 756 184 22 49 chr1 51086014 51086197 -146109235 - B2_Mm2 SINE B2 -17 178 1 1 974 342 241 38 12 chr1 51086387 51086467 -146108965 - Lx8 LINE L1 -527 6946 6865 1 974 754 278 57 21 chr1 51086466 51086749 -146108683 + Lx8 LINE L1 7181 7473 0 1 974 21 0 0 0 chr1 51087233 51087254 -146108178 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 230 339 111 16 chr1 51088500 51088626 -146106806 - B4 SINE B4 -154 138 1 1 974 866 94 0 0 chr1 51090070 51090187 -146105245 + B1_Mus2 SINE Alu 31 147 0 1 974 532 271 55 35 chr1 51090249 51090394 -146105038 + RSINE1 SINE B4 3 150 -15 1 974 449 326 129 35 chr1 51091302 51091674 -146103758 - MLT1D LTR MaLR -4 501 88 1 974 438 20 0 0 chr1 51091674 51091725 -146103707 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 974 449 326 129 35 chr1 51091725 51091810 -146103622 - MLT1D LTR MaLR -418 87 1 1 974 846 307 140 22 chr1 51091998 51092355 -146103077 + MTD LTR MaLR 10 408 -11 1 974 298 263 69 99 chr1 51095070 51095201 -146100231 - MIRc SINE MIR -56 212 83 1 974 6433 57 4 2 chr1 51097442 51098262 -146097170 - L1Md_F2 LINE L1 -4 6578 5758 1 974 21 36 0 0 chr1 51098902 51098930 -146096502 + AT_rich Low_complexity Low_complexity 1 28 0 1 974 7819 24 3 0 chr1 51099031 51099942 -146095490 + L1Md_F3 LINE L1 5659 6572 -12 1 974 342 0 0 0 chr1 51100527 51100565 -146094867 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 974 1989 149 8 19 chr1 51100940 51101303 -146094129 - RLTR15 LTR ERVK 0 359 1 1 974 221 348 51 25 chr1 51101735 51101853 -146093579 - MIR SINE MIR -138 124 4 1 974 1257 265 49 3 chr1 51102337 51102728 -146092704 - Lx6 LINE L1 -144 7316 7033 1 974 417 189 0 0 chr1 51103350 51103440 -146091992 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 974 346 259 210 22 chr1 51103440 51103578 -146091854 - RSINE1 SINE B4 0 165 2 1 974 219 283 0 0 chr1 51104364 51104417 -146091015 + RSINE1 SINE B4 41 93 -72 1 974 230 206 58 35 chr1 51104431 51104451 -146090981 + RMER17D LTR ERVK 281 300 -589 1 974 261 0 0 0 chr1 51104451 51104480 -146090952 + (TTCTC)n Simple_repeat Simple_repeat 1 29 0 1 974 230 206 58 35 chr1 51104480 51104685 -146090747 + RMER17D LTR ERVK 301 510 -379 1 974 388 66 0 0 chr1 51104768 51104829 -146090603 - Lx LINE L1 0 6654 6594 1 974 1123 217 26 45 chr1 51104829 51105170 -146090262 - Lx7 LINE L1 -37 7659 7063 1 974 690 380 33 43 chr1 51107210 51107603 -146087829 - LTR16B1 LTR ERVL -88 392 4 1 974 203 324 0 13 chr1 51110373 51110448 -146084984 + CT-rich Low_complexity Low_complexity 4 77 0 1 974 2876 187 42 10 chr1 51111903 51112491 -146082941 + Lx3C LINE L1 6362 6968 -8 1 974 923 135 0 6 chr1 51112499 51112656 -146082776 + (GAA)n Simple_repeat Simple_repeat 1 156 0 1 974 386 302 9 0 chr1 51114492 51114608 -146080824 - PB1D7 SINE Alu -2 118 2 1 974 840 227 56 10 chr1 51115708 51115904 -146079528 + B3 SINE B2 7 211 -5 1 974 441 36 0 0 chr1 51117518 51117573 -146077859 + (TAAAA)n Simple_repeat Simple_repeat 4 58 0 1 975 240 314 110 0 chr1 51118297 51118415 -146077017 - MIRc SINE MIR -27 241 111 1 975 186 308 118 65 chr1 51118485 51118638 -146076794 - L2 LINE L2 -587 2832 2672 1 975 307 333 96 33 chr1 51121419 51121689 -146073743 - MLT1I LTR MaLR -19 392 106 1 975 329 308 55 118 chr1 51122118 51122464 -146072968 + L1ME2z LINE L1 1926 2249 -3993 1 975 591 320 136 55 chr1 51122744 51123267 -146072165 + L1ME2z LINE L1 2600 3164 -2982 1 975 314 288 24 0 chr1 51123487 51123606 -146071826 + L1ME2z LINE L1 3761 3886 -2260 1 975 312 294 180 17 chr1 51123628 51123927 -146071505 + L1ME2z LINE L1 4960 5316 -830 1 975 381 293 38 60 chr1 51124014 51124245 -146071187 + B4A SINE B4 2 227 -65 1 975 381 22 0 0 chr1 51124450 51124496 -146070936 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 975 342 319 63 50 chr1 51124605 51124922 -146070510 + L1ME2z LINE L1 5746 6066 -378 1 975 447 252 38 30 chr1 51125876 51126007 -146069425 + MER5A1 DNA MER1_type 2 133 -33 1 975 356 296 197 14 chr1 51127638 51127785 -146067647 + B3A SINE B2 3 176 -22 1 975 507 33 0 0 chr1 51127798 51127859 -146067573 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 975 283 224 0 0 chr1 51127882 51127940 -146067492 + B1_Mm SINE Alu 90 147 0 1 975 421 32 0 31 chr1 51128454 51128519 -146066913 + (TTG)n Simple_repeat Simple_repeat 3 65 0 1 975 463 306 99 97 chr1 51128771 51129133 -146066299 - MLT1A0 LTR MaLR -2 363 1 1 975 594 176 0 0 chr1 51129537 51129656 -146065776 + CT-rich Low_complexity Low_complexity 2 120 0 1 975 310 295 75 63 chr1 51129656 51129815 -146065617 - HAL1-3A_ME LINE L1 -414 2444 2284 1 975 212 271 21 0 chr1 51130536 51130584 -146064848 + B3A SINE B2 3 51 -147 1 975 1218 286 53 3 chr1 51133959 51134296 -146061136 - Lx8 LINE L1 -884 6589 6236 1 975 296 241 28 83 chr1 51134448 51134660 -146060772 - L1MA5 LINE L1 -1617 6027 5856 1 975 293 289 203 27 chr1 51134657 51134805 -146060627 - L1_Rod LINE L1 -175 5672 5501 1 975 260 330 47 70 chr1 51136014 51136229 -146059203 - MIR SINE MIR -22 240 31 1 975 748 279 135 0 chr1 51137798 51138013 -146057419 + B4A SINE B4 5 248 -44 1 975 273 29 0 0 chr1 51138745 51138779 -146056653 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 975 310 320 123 14 chr1 51138841 51139117 -146056315 - ERVL-B4-int LTR ERVL -285 5476 5171 1 975 324 315 71 0 chr1 51139159 51139286 -146056146 - ERVL-B4-int LTR ERVL -748 5009 4874 1 975 873 269 114 39 chr1 51139292 51139836 -146055596 - ERVL-B4-int LTR ERVL -4227 1530 882 1 975 480 311 76 10 chr1 51139870 51140068 -146055364 - MTEb LTR MaLR 0 379 169 1 975 2439 162 73 77 chr1 51140193 51140741 -146054691 - RMER4B LTR ERVK -9 576 31 1 975 1109 82 57 6 chr1 51140744 51140903 -146054529 - B2_Mm2 SINE B2 -27 168 2 1 975 246 83 0 0 chr1 51140909 51140945 -146054487 - RMER4B LTR ERVK -547 38 3 1 975 202 296 0 0 chr1 51143030 51143074 -146052358 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 975 274 367 44 33 chr1 51143148 51143331 -146052101 - MLT1J1 LTR MaLR -217 227 43 1 975 1217 236 36 119 chr1 51143608 51144021 -146051411 - MTE2b LTR MaLR 0 379 1 1 975 1113 59 0 0 chr1 51145130 51145266 -146050166 + B1_Mm SINE Alu 2 137 -10 1 975 243 0 0 0 chr1 51145266 51145293 -146050139 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 975 374 300 18 0 chr1 51146432 51146542 -146048890 + PB1D9 SINE Alu 4 115 -5 1 975 21 0 0 0 chr1 51146627 51146648 -146048784 + AT_rich Low_complexity Low_complexity 1 21 0 1 975 871 253 27 38 chr1 51146677 51146940 -146048492 + Lx8 LINE L1 6387 6646 -827 1 975 522 204 0 0 chr1 51147674 51147787 -146047645 + (TA)n Simple_repeat Simple_repeat 1 113 0 1 975 1032 251 132 56 chr1 51147952 51148294 -146047138 + MTD LTR MaLR 3 370 -49 1 975 21 0 0 0 chr1 51148551 51148572 -146046860 + AT_rich Low_complexity Low_complexity 1 21 0 1 975 217 360 75 57 chr1 51149758 51149917 -146045515 + MIR SINE MIR 74 235 -27 1 975 188 365 78 72 chr1 51150048 51150379 -146045053 - L2a LINE L2 0 3426 3094 1 975 1274 259 50 17 chr1 51150648 51151064 -146044368 + Charlie1b DNA MER1_type 92 521 -2 1 975 654 37 0 0 chr1 51151314 51151395 -146044037 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 975 237 283 0 0 chr1 51151422 51151475 -146043957 + CT-rich Low_complexity Low_complexity 2 54 0 1 975 744 326 63 18 chr1 51151580 51151864 -146043568 - MER45B DNA Tip100 -491 549 253 1 975 545 164 9 0 chr1 51152191 51152307 -146043125 + (TAGG)n Simple_repeat Simple_repeat 1 117 0 2 975 665 230 166 10 chr1 51152344 51152670 -146042762 - MTD LTR MaLR -20 399 1 2 975 22 0 0 0 chr1 51152789 51152811 -146042621 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 213 39 0 0 chr1 51154360 51154386 -146041046 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 2 975 2399 57 6 0 chr1 51154698 51155013 -146040419 - L1Md_F2 LINE L1 -1 6581 6265 2 975 441 39 96 10 chr1 51156733 51156837 -146038595 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 2 975 207 100 0 0 chr1 51156856 51156886 -146038546 + (CATA)n Simple_repeat Simple_repeat 1 30 0 2 975 368 366 117 45 chr1 51157903 51158329 -146037103 - MLT2F LTR ERVL -85 578 122 2 975 555 56 0 0 chr1 51159059 51159130 -146036302 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 2 975 207 220 0 39 chr1 51159133 51159237 -146036195 + (TATATG)n Simple_repeat Simple_repeat 4 103 0 2 975 26 0 0 0 chr1 51159292 51159318 -146036114 + AT_rich Low_complexity Low_complexity 1 26 0 2 975 6700 4 0 0 chr1 51159377 51160126 -146035306 + L1Md_A LINE L1 4838 5586 -297 2 975 9026 2 0 0 chr1 51160126 51161122 -146034310 + L1Md_A LINE L1 5587 6582 0 2 975 219 122 49 0 chr1 51161193 51161234 -146034198 + T-rich Low_complexity Low_complexity 2 44 0 2 975 1114 68 7 7 chr1 51161239 51161386 -146034046 - B1_Mm SINE Alu 0 147 1 2 975 41 0 0 0 chr1 51162765 51162806 -146032626 + AT_rich Low_complexity Low_complexity 1 41 0 2 975 4876 91 0 13 chr1 51166377 51167091 -146028341 + L1_Mur1 LINE L1 4549 5253 -633 2 975 1837 285 60 30 chr1 51167087 51167753 -146027679 - Lx8 LINE L1 -270 7203 6518 2 975 460 298 12 90 chr1 51169895 51170061 -146025371 + B3A SINE B2 9 161 -37 2 975 304 377 61 15 chr1 51170571 51170703 -146024729 - L2a LINE L2 0 3426 3289 2 975 260 310 60 88 chr1 51170942 51171158 -146024274 - L2a LINE L2 -482 2937 2728 2 975 983 275 84 38 chr1 51171588 51171935 -146023497 + MTE2a LTR MaLR 9 371 -8 2 975 552 279 72 11 chr1 51171950 51172131 -146023301 - B4 SINE B4 -99 193 2 2 975 302 223 39 96 chr1 51172416 51172520 -146022912 - MTE2b LTR MaLR -2 377 280 2 975 429 224 0 12 chr1 51172660 51172746 -146022686 - ORR1D2 LTR MaLR -11 359 275 2 975 360 294 65 32 chr1 51172734 51172857 -146022575 - B4A SINE B4 -164 128 2 2 975 918 266 187 16 chr1 51173159 51173666 -146021766 + Lx8 LINE L1 6871 7464 -9 2 975 432 0 0 0 chr1 51174136 51174184 -146021248 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 975 1272 91 0 11 chr1 51174248 51174425 -146021007 + B2_Mm2 SINE B2 1 175 -20 2 975 265 344 95 91 chr1 51176195 51176438 -146018994 - B4 SINE B4 0 292 49 2 975 402 21 0 0 chr1 51176931 51176978 -146018454 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 975 513 269 39 0 chr1 51177224 51177354 -146018078 - B1_Mur2 SINE Alu -10 139 5 2 975 743 258 0 0 chr1 51177381 51177540 -146017892 - B3 SINE B2 -56 160 2 2 975 251 333 0 0 chr1 51177977 51178040 -146017392 - tRNA-Ala-GCA tRNA tRNA -6 69 7 2 975 236 390 0 0 chr1 51178040 51178051 -146017381 - ID4_ SINE ID 0 54 2 2 975 781 228 83 0 chr1 51178275 51178468 -146016964 + B3 SINE B2 2 210 -6 2 975 24 0 0 0 chr1 51178468 51178492 -146016940 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 241 333 39 19 chr1 51178624 51178728 -146016704 - L4 LINE RTE -373 1656 1551 2 975 21 36 0 0 chr1 51178956 51178984 -146016448 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 243 146 0 0 chr1 51180728 51180769 -146014663 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 975 316 324 123 22 chr1 51181378 51181594 -146013838 - MIRb SINE MIR 0 262 32 2 975 896 274 0 10 chr1 51181919 51182111 -146013321 + B3 SINE B2 13 202 -14 2 975 24 0 0 0 chr1 51184507 51184531 -146010901 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 441 66 0 0 chr1 51184671 51184732 -146010700 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 975 313 298 204 7 chr1 51185117 51185269 -146010163 + MIR SINE MIR 14 195 -67 2 975 289 292 259 13 chr1 51185638 51185796 -146009636 + ID_B1 SINE B4 2 198 -26 2 975 570 15 0 0 chr1 51185798 51185865 -146009567 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 975 619 104 0 19 chr1 51185866 51185938 -146009494 + (GAA)n Simple_repeat Simple_repeat 2 73 0 2 975 992 50 18 24 chr1 51185938 51186102 -146009330 + (GGAGA)n Simple_repeat Simple_repeat 4 166 0 2 975 619 104 0 19 chr1 51186102 51186137 -146009295 + (GAA)n Simple_repeat Simple_repeat 2 35 0 2 975 216 182 0 22 chr1 51186137 51186182 -146009250 + GA-rich Low_complexity Low_complexity 3 46 0 2 975 222 150 0 0 chr1 51187720 51187760 -146007672 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 975 30 0 0 0 chr1 51187838 51187868 -146007564 + AT_rich Low_complexity Low_complexity 1 30 0 2 975 531 258 107 0 chr1 51187903 51187946 -146007486 - B3A SINE B2 -1 197 153 2 975 393 102 0 0 chr1 51187946 51188005 -146007427 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 975 531 258 107 0 chr1 51188005 51188120 -146007312 - B3A SINE B2 -46 152 23 2 975 267 103 0 0 chr1 51189751 51189790 -146005642 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 975 24 0 0 0 chr1 51190681 51190705 -146004727 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 637 245 14 0 chr1 51190757 51190904 -146004528 - B1_Mur3 SINE Alu 0 149 1 2 975 799 293 120 0 chr1 51191454 51191737 -146003695 - MER2 DNA MER2_type -23 322 6 2 975 444 37 0 0 chr1 51191864 51191918 -146003514 + (TCC)n Simple_repeat Simple_repeat 2 55 0 2 975 303 161 0 0 chr1 51191918 51191974 -146003458 + CT-rich Low_complexity Low_complexity 1 56 0 2 975 29 0 0 0 chr1 51192736 51192765 -146002667 + AT_rich Low_complexity Low_complexity 1 29 0 2 975 294 266 53 9 chr1 51192928 51193042 -146002390 + Lx8 LINE L1 7198 7316 -157 2 975 180 0 0 0 chr1 51194119 51194139 -146001293 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 975 528 16 0 0 chr1 51194606 51194667 -146000765 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 975 183 354 0 0 chr1 51195083 51195131 -146000301 - L4 LINE RTE -203 1826 1779 2 975 348 283 147 15 chr1 51196092 51196290 -145999142 - MIRc SINE MIR -6 262 35 2 975 967 258 50 22 chr1 51196526 51196803 -145998629 + B4 SINE B4 3 287 -5 2 975 405 70 0 0 chr1 51196865 51196922 -145998510 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 975 180 0 0 0 chr1 51197000 51197020 -145998412 + (A)n Simple_repeat Simple_repeat 1 20 0 2 975 1283 53 94 0 chr1 51199235 51199405 -145996027 + B2_Mm1a SINE B2 2 187 -6 2 975 291 54 0 0 chr1 51201443 51201480 -145993952 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2 975 21 36 0 0 chr1 51201856 51201884 -145993548 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 1282 262 54 23 chr1 51202986 51203338 -145992094 - MTE2a LTR MaLR -7 372 10 2 975 408 322 8 8 chr1 51203341 51203463 -145991969 + ID_B1 SINE B4 95 216 -8 2 975 416 215 0 0 chr1 51203538 51203617 -145991815 + 4.5SRNA scRNA scRNA 1 79 -15 2 975 890 187 340 14 chr1 51204485 51204767 -145990665 - ORR1D1 LTR MaLR 0 374 1 2 975 215 362 12 36 chr1 51204836 51204919 -145990513 - L3b LINE CR1 -94 388 308 2 975 273 89 0 0 chr1 51206321 51206366 -145989066 + (A)n Simple_repeat Simple_repeat 1 45 0 2 975 2478 80 15 0 chr1 51207444 51207780 -145987652 + L1_Mus3 LINE L1 6294 6634 -4 2 975 230 0 0 32 chr1 51208010 51208041 -145987391 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 2 975 307 382 46 0 chr1 51209154 51209285 -145986147 + L2a LINE L2 3274 3410 -16 2 975 210 67 21 43 chr1 51210085 51210132 -145985300 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2 975 408 111 0 0 chr1 51212386 51212449 -145982983 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 975 1549 238 93 8 chr1 51212463 51212668 -145982764 - RLTR20A2 LTR ERVK -146 432 227 2 975 603 0 0 0 chr1 51212668 51212735 -145982697 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 975 1549 238 93 8 chr1 51212735 51212927 -145982505 - RLTR20A2 LTR ERVK -352 226 2 2 975 311 249 110 0 chr1 51213059 51213192 -145982240 - L1MA4 LINE L1 -357 5934 5778 2 975 364 230 24 12 chr1 51214388 51214555 -145980877 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2 975 2881 35 0 20 chr1 51214615 51214968 -145980464 - ORR1A0 LTR MaLR 0 346 1 2 975 402 57 0 0 chr1 51216135 51216188 -145979244 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 975 183 100 0 0 chr1 51216203 51216233 -145979199 + (TATATG)n Simple_repeat Simple_repeat 6 35 0 2 975 323 302 36 54 chr1 51216884 51216909 -145978523 - PB1D7 SINE Alu 0 120 101 2 975 1803 189 55 33 chr1 51216909 51217275 -145978157 + ORR1D1 LTR MaLR 1 374 0 2 975 323 302 36 54 chr1 51217275 51217361 -145978071 - PB1D7 SINE Alu -20 100 11 2 975 205 302 0 16 chr1 51217660 51217724 -145977708 + CT-rich Low_complexity Low_complexity 3 65 0 2 975 211 146 0 47 chr1 51217940 51217983 -145977449 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 2 975 252 77 0 0 chr1 51218281 51218320 -145977112 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 975 1147 75 0 7 chr1 51218329 51218477 -145976955 - B1_Mm SINE Alu 0 147 1 2 975 21 0 0 0 chr1 51218489 51218510 -145976922 + AT_rich Low_complexity Low_complexity 1 21 0 2 975 414 114 0 0 chr1 51219005 51219075 -145976357 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 975 287 311 77 77 chr1 51219350 51219545 -145975887 - Tigger10 DNA Tigger -35 1808 1614 2 975 322 312 68 37 chr1 51219845 51220008 -145975424 - MLT1C LTR MaLR 0 467 300 2 975 388 308 147 23 chr1 51220595 51220861 -145974571 - Tigger10 DNA Tigger -1436 407 109 2 975 197 269 111 37 chr1 51221133 51221214 -145974218 - L2b LINE L2 0 3375 3289 2 975 239 239 56 0 chr1 51221662 51221733 -145973699 + GA-rich Low_complexity Low_complexity 3 77 0 3 975 219 36 0 0 chr1 51222783 51222811 -145972621 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 975 3375 130 15 11 chr1 51223042 51223573 -145971859 - RLTR20A LTR ERVK -8 533 1 3 975 2447 198 79 2 chr1 51224026 51224522 -145970910 - RMER5 LTR ERV1 0 534 1 3 975 429 20 0 0 chr1 51224705 51224755 -145970677 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 975 198 246 0 0 chr1 51224874 51224935 -145970497 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 975 3432 33 0 0 chr1 51226964 51227360 -145968072 - MTA_Mm LTR MaLR 0 396 1 3 975 24 0 0 0 chr1 51229455 51229479 -145965953 + AT_rich Low_complexity Low_complexity 1 24 0 3 975 183 260 246 32 chr1 51229535 51229722 -145965710 - L3 LINE CR1 -10 4479 4253 3 975 1754 177 145 13 chr1 51229878 51230250 -145965182 - MTC LTR MaLR 0 421 1 3 975 354 23 0 0 chr1 51233318 51233361 -145962071 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 975 604 281 87 19 chr1 51233373 51233638 -145961794 - B4A SINE B4 -8 284 2 3 975 12470 19 0 0 chr1 51233777 51235285 -145960147 + L1Md_T LINE L1 4079 5586 -297 3 975 8040 56 0 0 chr1 51235285 51236313 -145959119 + L1Md_T LINE L1 5587 6582 0 3 975 549 44 0 0 chr1 51237349 51237417 -145958015 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 975 198 208 0 0 chr1 51237887 51237940 -145957492 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 3 975 519 17 0 0 chr1 51238973 51239033 -145956399 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 975 225 0 0 0 chr1 51240417 51240442 -145954990 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 3 975 302 320 157 17 chr1 51241086 51241258 -145954174 - HAL1-3A_ME LINE L1 -415 2443 2248 3 975 391 307 138 81 chr1 51244280 51244737 -145950695 - L3 LINE CR1 -57 4432 3950 3 975 969 268 20 70 chr1 51247628 51247929 -145947503 + B4 SINE B4 3 288 -4 3 976 189 175 0 0 chr1 51249940 51249980 -145945452 + T-rich Low_complexity Low_complexity 4 43 0 3 976 230 190 0 17 chr1 51250083 51250142 -145945290 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 3 976 656 325 82 78 chr1 51251313 51251719 -145943713 - MTE2a LTR MaLR 0 419 6 3 976 306 73 0 0 chr1 51252473 51252514 -145942918 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 3 976 879 58 24 24 chr1 51253507 51253631 -145941801 - B1_Mus1 SINE Alu 0 148 25 3 976 315 0 0 0 chr1 51253631 51253666 -145941766 + (A)n Simple_repeat Simple_repeat 1 35 0 3 976 285 98 0 0 chr1 51254072 51254113 -145941319 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 3 976 21 0 0 0 chr1 51254567 51254588 -145940844 + AT_rich Low_complexity Low_complexity 1 21 0 3 976 261 0 0 0 chr1 51255380 51255409 -145940023 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 976 398 75 15 0 chr1 51257166 51257233 -145938199 + (CAAAAA)n Simple_repeat Simple_repeat 2 69 0 3 976 763 354 16 0 chr1 51257469 51257715 -145937717 + MLT1F2 LTR MaLR 311 560 0 3 976 21 0 0 0 chr1 51258984 51259005 -145936427 + AT_rich Low_complexity Low_complexity 1 21 0 3 976 277 253 138 12 chr1 51259008 51259088 -145936344 + BC1_Mm scRNA scRNA 6 95 -57 3 976 348 167 0 0 chr1 51259088 51259160 -145936272 + GA-rich Low_complexity Low_complexity 1 72 0 3 976 243 309 0 87 chr1 51259228 51259320 -145936112 - MER5A DNA MER1_type -68 121 38 3 976 287 0 53 0 chr1 51260039 51260077 -145935355 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 976 374 310 23 15 chr1 51262104 51262235 -145933197 + Charlie5 DNA MER1_type 2487 2618 -6 3 976 321 139 13 40 chr1 51262668 51262743 -145932689 + CR1_Mam LINE CR1 876 948 -1256 3 976 438 372 0 8 chr1 51262899 51263029 -145932403 - B1F SINE Alu -20 129 1 3 976 888 281 57 51 chr1 51263036 51263508 -145931924 - L1MA6 LINE L1 0 6300 5826 3 976 890 292 37 28 chr1 51263502 51263963 -145931469 + L1M2 LINE L1 3775 4239 -1904 3 976 328 342 50 50 chr1 51263966 51264126 -145931306 + RSINE1 SINE B4 6 165 0 3 976 189 107 0 0 chr1 51264138 51264166 -145931266 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 976 1099 260 251 19 chr1 51264182 51264747 -145930685 + L1M2 LINE L1 4252 4947 -1196 3 976 180 200 0 0 chr1 51264761 51264806 -145930626 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 976 302 219 70 16 chr1 51264810 51264958 -145930474 + L1M2 LINE L1 5654 5812 -488 3 976 2777 25 0 169 chr1 51265110 51265549 -145929883 - RLTR10B2 LTR ERVK 0 365 1 3 976 242 125 21 0 chr1 51265821 51265869 -145929563 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 976 21 71 0 0 chr1 51267882 51267924 -145927508 + AT_rich Low_complexity Low_complexity 1 42 0 3 976 707 203 28 14 chr1 51271042 51271187 -145924245 + B1_Mus1 SINE Alu 1 147 -1 3 976 899 124 122 18 chr1 51271244 51271408 -145924024 + B2_Mm2 SINE B2 1 181 -14 3 976 402 69 0 0 chr1 51271549 51271607 -145923825 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 976 261 0 0 0 chr1 51271607 51271636 -145923796 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 976 180 0 0 0 chr1 51271644 51271664 -145923768 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 976 210 37 0 0 chr1 51271664 51271690 -145923742 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 976 411 146 15 30 chr1 51271701 51271835 -145923597 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 976 232 214 54 54 chr1 51271835 51271909 -145923523 - B4A SINE B4 -1 291 218 3 976 247 253 187 0 chr1 51271927 51272002 -145923430 - B4A SINE B4 -202 90 2 3 976 553 274 30 59 chr1 51272290 51272492 -145922940 - B3A SINE B2 -1 197 2 3 976 323 248 0 8 chr1 51274512 51274634 -145920798 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 976 2065 303 58 26 chr1 51275832 51276754 -145918678 - Lx9 LINE L1 -113 7531 6581 3 976 384 119 0 0 chr1 51277094 51277153 -145918279 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 976 473 0 18 0 chr1 51277980 51278037 -145917395 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 976 378 0 0 0 chr1 51278037 51278078 -145917354 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 976 410 312 71 7 chr1 51278199 51278354 -145917078 + RSINE1 SINE B4 1 165 0 3 976 1830 231 31 5 chr1 51278483 51278874 -145916558 - MTD LTR MaLR -1 418 18 3 976 1272 84 0 0 chr1 51279708 51279936 -145915496 + (TC)n Simple_repeat Simple_repeat 1 228 0 3 976 297 0 0 0 chr1 51279936 51279969 -145915463 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 976 201 227 0 0 chr1 51280084 51280128 -145915304 - MIR3 SINE MIR -6 202 159 3 976 226 281 0 0 chr1 51281037 51281094 -145914338 + L2c LINE L2 3331 3387 0 3 976 268 349 12 0 chr1 51282667 51282750 -145912682 - L2c LINE L2 -13 3374 3291 3 976 288 284 0 0 chr1 51282800 51282881 -145912551 - ID4 SINE ID -1 82 2 3 976 374 260 95 9 chr1 51282890 51282995 -145912437 - PB1 SINE Alu -1 126 13 3 976 22 0 0 0 chr1 51283892 51283914 -145911518 + GC_rich Low_complexity Low_complexity 1 22 0 3 976 218 208 0 0 chr1 51284222 51284270 -145911162 + A-rich Low_complexity Low_complexity 1 48 0 3 976 353 136 0 15 chr1 51284643 51284710 -145910722 + GA-rich Low_complexity Low_complexity 1 66 0 3 976 278 396 20 56 chr1 51285176 51285374 -145910058 - L2c LINE L2 -438 2981 2791 3 976 234 381 101 25 chr1 51285805 51285964 -145909468 + L4 LINE RTE 1596 1766 -263 3 976 1721 194 20 38 chr1 51286138 51286529 -145908903 + ORR1C2 LTR MaLR 1 384 0 3 976 240 143 0 0 chr1 51287275 51287317 -145908115 + (TTG)n Simple_repeat Simple_repeat 3 44 0 3 976 662 307 49 42 chr1 51287355 51287641 -145907791 - B4A SINE B4 -4 288 1 3 976 470 228 35 17 chr1 51289059 51289230 -145906202 - B3A SINE B2 -3 213 1 3 976 8847 139 11 22 chr1 51289392 51291762 -145903670 + Lx LINE L1 4319 6654 0 3 976 270 320 58 52 chr1 51294814 51294969 -145900463 + MIR SINE MIR 14 169 -93 3 976 300 53 0 0 chr1 51295461 51295499 -145899933 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 976 187 88 88 0 chr1 51296438 51296472 -145898960 + L2b LINE L2 3334 3370 -5 3 976 407 356 47 27 chr1 51296478 51296628 -145898804 + LTR88c LTR Genie? 6 158 -704 3 976 600 295 88 15 chr1 51296817 51297079 -145898353 + B4A SINE B4 2 282 -10 3 976 405 135 22 11 chr1 51297079 51297169 -145898263 + GA-rich Low_complexity Low_complexity 1 91 0 3 976 524 292 73 0 chr1 51298164 51298342 -145897090 - MIR3 SINE MIR -14 194 4 3 976 216 319 90 21 chr1 51302553 51302697 -145892735 - L2a LINE L2 -28 3398 3245 3 976 262 295 89 16 chr1 51302984 51303108 -145892324 - L2a LINE L2 -554 2865 2733 3 976 222 171 0 0 chr1 51304371 51304412 -145891020 + A-rich Low_complexity Low_complexity 1 41 0 3 976 2155 295 99 28 chr1 51304743 51305711 -145889721 - Lx8 LINE L1 -6 7467 6431 3 976 310 353 84 7 chr1 51307122 51307276 -145888156 + MIR SINE MIR 6 171 -91 3 976 188 200 42 84 chr1 51307934 51308005 -145887427 - L3 LINE CR1 -864 3625 3558 3 976 29 28 0 0 chr1 51308382 51308418 -145887014 + AT_rich Low_complexity Low_complexity 1 36 0 3 976 295 326 109 33 chr1 51308436 51308620 -145886812 - MIRb SINE MIR -46 222 25 3 976 36540 3 0 0 chr1 51308622 51313636 -145881796 - L1Md_A LINE L1 0 6582 1569 3 976 4989 30 1 13 chr1 51313639 51314315 -145881117 - L1Md_A LINE L1 -6050 674 7 3 976 231 152 0 0 chr1 51315504 51315550 -145879882 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 976 829 186 198 0 chr1 51315603 51315780 -145879652 + B3 SINE B2 3 214 -2 3 976 21 0 0 0 chr1 51316484 51316505 -145878927 + AT_rich Low_complexity Low_complexity 1 21 0 3 976 733 321 48 32 chr1 51316529 51316844 -145878588 + MER2 DNA MER2_type 24 343 -2 3 976 797 326 36 73 chr1 51316964 51317237 -145878195 + B4 SINE B4 3 271 -21 3 976 330 26 0 0 chr1 51317237 51317276 -145878156 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 976 797 326 36 73 chr1 51317276 51317303 -145878129 + B4 SINE B4 272 292 0 3 976 651 288 0 19 chr1 51317741 51317897 -145877535 + B3A SINE B2 8 160 -38 4 976 369 0 0 0 chr1 51317910 51317951 -145877481 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 976 301 296 111 17 chr1 51318508 51318625 -145876807 + LTR40c LTR ERVL 298 425 -40 4 976 552 320 77 17 chr1 51318983 51319213 -145876219 + ID_B1 SINE B4 8 248 -44 4 976 468 0 0 0 chr1 51319362 51319414 -145876018 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 976 830 164 0 15 chr1 51319507 51319643 -145875789 - B1_Mur3 SINE Alu -15 134 1 4 976 202 188 0 0 chr1 51319760 51319792 -145875640 + polypurine Low_complexity Low_complexity 2 33 0 4 976 402 343 15 114 chr1 51320894 51321095 -145874337 + Tigger15a DNA TcMar 1 181 -534 4 976 336 265 19 56 chr1 51321304 51321412 -145874020 + RSINE1 SINE B4 21 124 -41 4 976 486 49 0 0 chr1 51321415 51321476 -145873956 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 976 222 160 0 0 chr1 51321488 51321538 -145873894 + GA-rich Low_complexity Low_complexity 3 52 0 4 976 210 254 0 0 chr1 51321901 51321960 -145873472 + A-rich Low_complexity Low_complexity 1 59 0 4 976 278 329 88 31 chr1 51322859 51323019 -145872413 - MLT1K LTR MaLR -416 179 11 4 976 768 212 7 0 chr1 51323264 51323410 -145872022 - B1_Mus2 SINE Alu 0 147 1 4 976 254 274 0 16 chr1 51323951 51324014 -145871418 - L3 LINE CR1 -452 4037 3976 4 976 342 0 0 0 chr1 51324709 51324747 -145870685 + (A)n Simple_repeat Simple_repeat 1 38 0 4 976 235 250 23 136 chr1 51325497 51325585 -145869847 + L2a LINE L2 3305 3382 -44 4 976 1067 261 43 52 chr1 51326264 51326588 -145868844 - MT2A LTR ERVL -212 321 1 4 976 230 254 19 17 chr1 51327820 51327900 -145867532 - MIRc SINE MIR -72 190 108 4 976 253 271 225 0 chr1 51328179 51328308 -145867124 + MLT1E1A LTR MaLR 397 554 -126 4 976 266 368 70 0 chr1 51328392 51328506 -145866926 - B3A SINE B2 -27 171 50 4 976 305 330 102 63 chr1 51328505 51328790 -145866642 - RMER17C LTR ERVK -49 361 66 4 976 236 152 22 0 chr1 51328971 51329017 -145866415 + MLT1E1A LTR MaLR 614 660 -20 4 976 345 47 0 0 chr1 51329037 51329080 -145866352 + (ATG)n Simple_repeat Simple_repeat 2 44 0 4 976 180 313 75 57 chr1 51329086 51329245 -145866187 - L2a LINE L2 -82 3344 3183 4 976 270 367 0 0 chr1 51331040 51331119 -145864313 + Charlie9 DNA MER1_type 1 79 -2678 4 976 306 106 0 0 chr1 51331537 51331584 -145863848 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 976 388 164 0 0 chr1 51332067 51332134 -145863298 - RMER20B LTR ERVK -1 626 560 4 976 2525 47 0 24 chr1 51332353 51332682 -145862750 - L1Md_F3 LINE L1 -4 6580 6260 4 976 28 79 0 0 chr1 51332835 51332898 -145862534 + AT_rich Low_complexity Low_complexity 1 63 0 4 976 3308 65 0 17 chr1 51333036 51333443 -145861989 - MTB LTR MaLR 0 400 1 4 976 23 86 0 0 chr1 51333473 51333531 -145861901 + AT_rich Low_complexity Low_complexity 1 58 0 4 976 674 96 0 9 chr1 51334670 51334775 -145860657 + (TCC)n Simple_repeat Simple_repeat 3 106 0 4 976 348 266 124 39 chr1 51335166 51335295 -145860137 + L3b LINE CR1 207 346 -136 4 976 5184 16 0 0 chr1 51335484 51336037 -145859395 + L1Md_A LINE L1 6030 6582 0 4 976 363 369 78 5 chr1 51336888 51337092 -145858340 - MIR SINE MIR -36 226 8 4 976 331 317 128 92 chr1 51337262 51337721 -145857711 - LTR48B LTR ERV1 -32 612 137 4 976 245 200 0 0 chr1 51337829 51337874 -145857558 - LTR48B LTR ERV1 -599 45 1 4 976 368 319 75 40 chr1 51338258 51338517 -145856915 + RSINE1 SINE B4 3 275 -17 4 976 3871 238 134 31 chr1 51338838 51340128 -145855304 + RMER1A Other Other 1 910 -120 4 976 1281 63 0 0 chr1 51340128 51340353 -145855079 + (TG)n Simple_repeat Simple_repeat 1 225 0 4 976 3871 201 190 13 chr1 51340353 51340464 -145854968 + RMER1A Other Other 911 1026 -4 4 976 194 176 0 19 chr1 51340540 51340592 -145854840 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 976 901 236 0 45 chr1 51340757 51340957 -145854475 - B3 SINE B2 -2 214 24 4 976 969 290 146 24 chr1 51341130 51341466 -145853966 - MTEa LTR MaLR -2 377 1 4 976 805 153 41 57 chr1 51341496 51341690 -145853742 + Lx9 LINE L1 7262 7452 -192 4 976 486 0 0 0 chr1 51341695 51341749 -145853683 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 976 324 179 75 25 chr1 51341773 51341853 -145853579 + Lx9 LINE L1 7553 7636 -8 4 976 718 272 73 83 chr1 51342617 51342918 -145852514 + MTEa LTR MaLR 33 330 -49 4 976 354 378 107 45 chr1 51343548 51343969 -145851463 + MLT1H LTR MaLR 91 537 -12 4 976 385 284 26 0 chr1 51344030 51344146 -145851286 + PB1D7 SINE Alu 1 119 -1 4 976 1829 95 0 0 chr1 51348000 51348252 -145847180 + L1_Mm LINE L1 2588 2839 -3044 4 976 1288 99 42 0 chr1 51348247 51348438 -145846994 - L1_Mm LINE L1 -3962 1921 1723 4 976 207 352 108 20 chr1 51349290 51349438 -145845994 + MIRb SINE MIR 1 161 -107 4 976 264 311 64 57 chr1 51349510 51349650 -145845782 - MIR SINE MIR -114 148 8 4 976 205 321 48 0 chr1 51349674 51349758 -145845674 + MIRb SINE MIR 181 268 0 4 976 314 345 0 7 chr1 51350293 51350439 -145844993 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 976 931 193 0 0 chr1 51350813 51350953 -145844479 + B1_Mus1 SINE Alu 1 140 -8 4 976 336 24 0 0 chr1 51350953 51350994 -145844438 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 976 4242 63 0 4 chr1 51352032 51352527 -145842905 + L1Md_F2 LINE L1 6074 6566 -16 4 976 300 27 0 0 chr1 51352784 51352821 -145842611 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 976 2721 251 42 35 chr1 51355407 51356147 -145839285 - Lx8 LINE L1 -267 7206 6462 4 976 306 299 66 73 chr1 51356338 51356475 -145838957 - MIR3 SINE MIR -48 160 25 4 976 495 0 0 0 chr1 51356871 51356926 -145838506 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 976 315 0 0 0 chr1 51356926 51356960 -145838472 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 976 222 91 0 0 chr1 51360740 51360773 -145834659 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 976 270 0 0 0 chr1 51360774 51360804 -145834628 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 976 619 286 107 98 chr1 51361968 51362142 -145833290 - MER2 DNA MER2_type -5 340 165 4 976 826 218 63 19 chr1 51362142 51362348 -145833084 - B3 SINE B2 0 216 2 4 976 619 286 107 98 chr1 51362348 51362510 -145832922 - MER2 DNA MER2_type -181 164 1 4 976 2300 194 109 8 chr1 51362636 51363115 -145832317 - RLTR11A2 LTR ERVK 0 527 1 4 976 288 70 0 0 chr1 51363637 51363680 -145831752 + (A)n Simple_repeat Simple_repeat 1 43 0 4 976 411 289 57 213 chr1 51363813 51364217 -145831215 - MER102b DNA MER1_type 0 341 1 4 976 261 0 0 0 chr1 51364318 51364347 -145831085 + (A)n Simple_repeat Simple_repeat 1 29 0 4 976 216 97 0 0 chr1 51365100 51365131 -145830301 + (A)n Simple_repeat Simple_repeat 1 31 0 4 976 473 279 7 45 chr1 51365242 51365396 -145830036 + ORR1E LTR MaLR 1 148 -211 4 976 1200 152 101 19 chr1 51365396 51365604 -145829828 + URR1B DNA MER1_type 1 225 0 4 976 488 314 260 4 chr1 51366221 51366481 -145828951 - MLT1A0 LTR MaLR -34 331 6 4 976 31 58 0 0 chr1 51367075 51367127 -145828305 + AT_rich Low_complexity Low_complexity 1 52 0 4 976 439 252 30 0 chr1 51367227 51367326 -145828106 - MLT1E3 LTR MaLR -42 582 481 4 976 298 250 0 15 chr1 51367306 51367371 -145828061 - RMER17D2 LTR ERVK -745 64 1 4 976 11561 88 16 17 chr1 51367443 51369154 -145826278 - L1MEg LINE L1 -632 3124 1091 4 976 1344 31 0 0 chr1 51369382 51369543 -145825889 + (TTC)n Simple_repeat Simple_repeat 2 162 0 4 976 850 84 190 0 chr1 51369549 51369691 -145825741 - L1_Mus3 LINE L1 -13 6625 6457 4 976 4031 64 0 0 chr1 51369690 51370506 -145824926 - L1VL2 LINE L1 -2278 1337 522 4 976 227 370 0 24 chr1 51370514 51370597 -145824835 + ORR1E LTR MaLR 10 90 -289 4 976 327 295 140 68 chr1 51370661 51370868 -145824564 + ORR1E LTR MaLR 77 298 -61 4 976 474 336 80 66 chr1 51370873 51371160 -145824272 - B4A SINE B4 0 292 2 4 976 255 253 22 22 chr1 51371658 51371747 -145823685 + A-rich Low_complexity Low_complexity 2 90 0 4 976 613 349 202 30 chr1 51372679 51373010 -145822422 + FordPrefect DNA Tip100 352 739 -944 4 976 416 261 50 8 chr1 51373102 51373222 -145822210 + FordPrefect DNA Tip100 907 1031 -652 4 976 2172 190 69 32 chr1 51373433 51373986 -145821446 + MT2A LTR ERVL 2 576 -8 4 976 713 316 188 105 chr1 51375446 51375998 -145819434 + FordPrefect DNA Tip100 1086 1683 0 4 976 190 154 101 0 chr1 51376149 51376298 -145819134 + (CTACT)n Simple_repeat Simple_repeat 4 167 0 4 976 182 159 87 0 chr1 51376310 51376448 -145818984 + (CTACT)n Simple_repeat Simple_repeat 4 153 0 4 976 340 174 106 0 chr1 51376584 51376745 -145818687 + (CTACT)n Simple_repeat Simple_repeat 2 179 0 4 976 8156 33 1 0 chr1 51377018 51377963 -145817469 - L1Md_T LINE L1 0 6582 5637 4 976 192 135 0 0 chr1 51378343 51378380 -145817052 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 976 488 345 84 15 chr1 51378557 51378760 -145816672 + B4 SINE B4 4 220 -72 4 976 562 68 11 11 chr1 51378807 51378896 -145816536 + (CA)n Simple_repeat Simple_repeat 1 89 0 4 976 247 311 108 144 chr1 51379276 51379399 -145816033 + MTEb LTR MaLR 1 149 -210 4 976 270 0 0 0 chr1 51379399 51379429 -145816003 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 4 976 283 278 56 159 chr1 51379429 51379680 -145815752 + MTEb LTR MaLR 150 379 0 4 977 745 306 132 12 chr1 51381159 51381417 -145814015 + B4A SINE B4 2 290 -2 4 977 453 347 126 58 chr1 51381455 51381819 -145813613 - LTR16A1 LTR ERVL -25 431 43 4 977 186 43 0 0 chr1 51383500 51383523 -145811909 + (TCC)n Simple_repeat Simple_repeat 2 24 0 4 977 329 298 14 64 chr1 51384254 51384394 -145811038 + MIR SINE MIR 35 167 -95 4 977 514 256 7 14 chr1 51384409 51384548 -145810884 + L1M3 LINE L1 5675 5812 -356 4 977 354 332 48 52 chr1 51384549 51384838 -145810594 + B4A SINE B4 1 288 -4 4 977 473 282 80 18 chr1 51384918 51385142 -145810290 + L1MB1 LINE L1 5793 6030 -138 4 977 509 133 0 0 chr1 51385167 51385242 -145810190 + B3 SINE B2 3 77 -139 4 977 307 276 40 36 chr1 51385309 51385441 -145809991 + L1MB1 LINE L1 6044 6178 -11 4 977 317 277 145 8 chr1 51385906 51386037 -145809395 - B1F SINE Alu 0 149 1 5 977 590 354 24 51 chr1 51386693 51386985 -145808447 + B4A SINE B4 9 292 0 5 977 652 264 192 110 chr1 51387083 51387173 -145808259 - RLTR16 LTR ERVK 0 505 413 5 977 360 0 0 0 chr1 51387173 51387213 -145808219 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 977 652 264 192 110 chr1 51387213 51387586 -145807846 - RLTR16 LTR ERVK -93 412 5 5 977 1049 245 47 76 chr1 51389390 51389691 -145805741 + B4A SINE B4 1 292 0 5 977 213 196 43 0 chr1 51391777 51391823 -145803609 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 977 914 261 153 42 chr1 51392589 51392860 -145802572 + MLT1D LTR MaLR 13 307 -198 5 977 865 125 278 0 chr1 51392860 51393036 -145802396 + URR1B DNA MER1_type 1 225 0 5 977 914 261 153 42 chr1 51393036 51393196 -145802236 + MLT1D LTR MaLR 308 492 -13 5 977 237 33 0 0 chr1 51393300 51393330 -145802102 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 5 977 331 204 9 184 chr1 51394089 51394203 -145801229 + B2_Mm2 SINE B2 2 95 -100 5 977 262 317 88 16 chr1 51394230 51394355 -145801077 + B4A SINE B4 158 291 -1 5 977 234 0 0 0 chr1 51394364 51394390 -145801042 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 977 803 238 63 15 chr1 51394998 51395203 -145800229 + B3 SINE B2 2 216 0 5 977 531 291 50 16 chr1 51395320 51395502 -145799930 - Charlie2a DNA MER1_type -1200 1661 1474 5 977 279 324 63 21 chr1 51395791 51395933 -145799499 - MLT1A1 LTR MaLR 0 408 261 5 977 1385 85 17 0 chr1 51396203 51396379 -145799053 + B2_Mm1t SINE B2 1 179 -14 5 977 318 143 0 0 chr1 51396421 51396470 -145798962 + B2_Mm2 SINE B2 48 96 -99 5 977 2098 165 118 13 chr1 51396847 51396921 -145798511 + MTC LTR MaLR 1 74 -347 5 977 1219 56 0 27 chr1 51396921 51397068 -145798364 + B1_Mm SINE Alu 2 144 -3 5 977 977 95 7 0 chr1 51397070 51397217 -145798215 + (GAAAA)n Simple_repeat Simple_repeat 4 151 0 5 977 2098 165 118 13 chr1 51397217 51397519 -145797913 + MTC LTR MaLR 75 420 -1 5 977 261 0 0 0 chr1 51398008 51398037 -145797395 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 5 977 230 257 29 0 chr1 51398604 51398674 -145796758 + L2a LINE L2 3354 3425 -1 5 977 860 111 7 0 chr1 51398930 51399065 -145796367 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 5 977 2025 136 3 74 chr1 51400598 51400978 -145794454 + RLTR20A LTR ERVK 189 541 0 5 977 722 110 0 33 chr1 51401537 51401659 -145793773 + Lx LINE L1 6537 6654 0 5 977 518 274 0 17 chr1 51401856 51401971 -145793461 + B3A SINE B2 6 118 -80 5 977 290 222 14 27 chr1 51401969 51402043 -145793389 + B3A SINE B2 23 95 -103 5 977 247 309 64 0 chr1 51402253 51402363 -145793069 - LTR37A LTR ERV1 -15 411 295 5 977 266 302 8 33 chr1 51402399 51402519 -145792913 - LTR37A LTR ERV1 -242 184 68 5 977 236 329 49 7 chr1 51402854 51402998 -145792434 + L1MC4a LINE L1 7484 7633 -249 5 977 373 234 75 34 chr1 51403073 51403219 -145792213 + L1MC4a LINE L1 7730 7881 -1 5 977 21 0 0 0 chr1 51403575 51403596 -145791836 + AT_rich Low_complexity Low_complexity 1 21 0 5 977 451 298 14 0 chr1 51403753 51403894 -145791538 - Lx9 LINE L1 -299 7345 7203 5 977 240 312 47 0 chr1 51404024 51404088 -145791344 + ID4_ SINE ID 3 69 -14 5 977 189 74 0 0 chr1 51404103 51404130 -145791302 + (A)n Simple_repeat Simple_repeat 1 27 0 5 977 538 316 13 0 chr1 51404185 51404343 -145791089 + RSINE1 SINE B4 4 163 -2 5 977 795 249 53 10 chr1 51404492 51404656 -145790776 + B3 SINE B2 1 166 -50 5 977 288 0 0 0 chr1 51404656 51404688 -145790744 + (CATA)n Simple_repeat Simple_repeat 3 34 0 5 977 795 249 53 10 chr1 51404688 51404730 -145790702 + B3 SINE B2 167 215 -1 5 977 257 335 47 20 chr1 51406949 51407122 -145788310 - MIRb SINE MIR -63 205 13 5 977 180 111 0 0 chr1 51408352 51408379 -145787053 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 977 216 382 26 0 chr1 51408379 51408455 -145786977 - ID4 SINE ID -5 78 1 5 977 186 362 21 48 chr1 51408571 51408716 -145786716 + L2a LINE L2 3107 3250 -137 5 977 773 281 192 7 chr1 51408730 51409027 -145786405 - ORR1E LTR MaLR -5 354 3 5 977 232 289 0 0 chr1 51409086 51409138 -145786294 + L2a LINE L2 3338 3389 -37 5 977 1250 50 0 0 chr1 51409515 51409674 -145785758 + MTB LTR MaLR 241 399 -1 5 977 5961 133 112 100 chr1 51409674 51410916 -145784516 + MTB-int LTR MaLR 2 1258 0 5 977 2809 108 50 0 chr1 51410916 51411297 -145784135 + MTB LTR MaLR 1 400 0 5 977 731 299 159 37 chr1 51411775 51412232 -145783200 + MTEa LTR MaLR 45 360 -145 5 977 1783 145 128 3 chr1 51412273 51412592 -145782840 + ORR1B2 LTR MaLR 1 359 -8 5 977 391 315 67 75 chr1 51413791 51414031 -145781401 - MTEa LTR MaLR -141 238 1 5 977 324 0 0 0 chr1 51414899 51414935 -145780497 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 977 2049 166 33 14 chr1 51414938 51415305 -145780127 - RLTR30 LTR ERV1 -5 374 1 5 977 303 321 50 14 chr1 51415790 51415929 -145779503 + B1F1 SINE Alu 4 147 -2 5 977 254 250 0 62 chr1 51415948 51416012 -145779420 + ID4 SINE ID 22 81 -2 5 977 423 0 0 0 chr1 51416013 51416060 -145779372 + (TAA)n Simple_repeat Simple_repeat 3 49 0 5 977 210 71 0 0 chr1 51418238 51418266 -145777166 + (A)n Simple_repeat Simple_repeat 1 28 0 5 977 1345 249 41 78 chr1 51418433 51418820 -145776612 - MTEa LTR MaLR -2 377 5 5 977 359 269 128 9 chr1 51419678 51419787 -145775645 + MER5A DNA MER1_type 41 162 -27 5 977 380 293 0 57 chr1 51420398 51420503 -145774929 - PB1D10 SINE Alu 0 117 19 5 977 259 364 149 28 chr1 51420503 51420568 -145774864 - ID_B1 SINE B4 0 224 33 5 977 389 310 54 0 chr1 51420568 51420697 -145774735 + MER33 DNA MER1_type 2 137 -187 5 977 903 293 38 4 chr1 51420701 51420941 -145774491 + Lx8 LINE L1 7080 7327 -146 5 977 549 326 0 14 chr1 51421093 51421236 -145774196 + RSINE1 SINE B4 3 143 -22 5 977 1126 81 7 14 chr1 51421237 51421525 -145773907 + (CA)n Simple_repeat Simple_repeat 1 285 0 5 977 195 42 0 0 chr1 51421525 51421549 -145773883 + (CACAC)n Simple_repeat Simple_repeat 1 24 0 5 977 339 44 0 0 chr1 51424365 51424410 -145771022 + (A)n Simple_repeat Simple_repeat 1 45 0 5 977 853 121 127 6 chr1 51424618 51424784 -145770648 + B2_Mm2 SINE B2 6 191 -4 5 977 237 206 31 31 chr1 51424942 51425007 -145770425 - RLTR19C LTR ERVK -409 97 33 5 977 398 250 11 158 chr1 51425097 51425287 -145770145 - B4 SINE B4 -124 168 7 5 977 477 0 0 0 chr1 51425454 51425507 -145769925 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 977 531 43 0 0 chr1 51427060 51427130 -145768302 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 977 3941 35 5 2 chr1 51427130 51427564 -145767868 - RLTR10C LTR ERVK -1 435 1 5 977 422 313 67 68 chr1 51427564 51427754 -145767678 - B3A SINE B2 -15 201 6 5 977 22 35 0 0 chr1 51427904 51427933 -145767499 + AT_rich Low_complexity Low_complexity 1 29 0 5 977 233 57 0 28 chr1 51429039 51429075 -145766357 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 5 977 3700 157 47 30 chr1 51430847 51431522 -145763910 + RMER6C LTR ERVK 1 687 -3 5 977 356 268 157 12 chr1 51431794 51431960 -145763472 + L1M5 LINE L1 3110 3299 -2847 5 977 1172 290 37 0 chr1 51433164 51433598 -145761834 - L1M2 LINE L1 -1110 5030 4569 5 977 1468 178 92 4 chr1 51433638 51433909 -145761523 - MTC LTR MaLR 0 421 127 5 977 2086 114 9 45 chr1 51434008 51434338 -145761094 + ORR1A3 LTR MaLR 1 318 -8 5 977 348 169 0 44 chr1 51434335 51434403 -145761029 - MTC LTR MaLR -300 121 57 5 977 1689 275 105 20 chr1 51434495 51435041 -145760391 - L1_Mur3 LINE L1 -1629 4251 3650 5 977 234 0 0 0 chr1 51435041 51435067 -145760365 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 977 1689 275 105 20 chr1 51435067 51435224 -145760208 - L1_Mur3 LINE L1 -2231 3649 3488 5 977 282 297 53 0 chr1 51435686 51435813 -145759619 + L1M5 LINE L1 4714 4846 -1300 5 977 263 237 60 143 chr1 51436194 51436327 -145759105 - MLT1D LTR MaLR -32 473 352 5 977 243 0 0 0 chr1 51436330 51436357 -145759075 + (T)n Simple_repeat Simple_repeat 1 27 0 5 977 724 363 18 14 chr1 51437778 51438055 -145757377 - B4A SINE B4 -6 286 9 5 977 277 232 32 6 chr1 51438162 51438237 -145757195 - ORR1E LTR MaLR -15 364 290 5 977 1714 158 45 65 chr1 51438309 51438662 -145756770 - ORR1B1 LTR MaLR -8 386 41 5 977 288 0 0 0 chr1 51439427 51439459 -145755973 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 977 306 288 61 46 chr1 51439460 51439591 -145755841 - ORR1E LTR MaLR -226 133 1 5 977 3359 25 6 251 chr1 51441755 51442384 -145753048 + IAPLTR2_Mm LTR ERVK 1 475 0 5 977 247 200 130 130 chr1 51443006 51443121 -145752311 + MT2B LTR ERVL 150 264 -337 5 977 569 193 0 76 chr1 51443038 51443156 -145752276 + B1_Mur2 SINE Alu 34 143 -5 5 977 411 21 0 0 chr1 51443156 51443204 -145752228 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 977 314 70 0 0 chr1 51443206 51443249 -145752183 + MT2B LTR ERVL 1 43 -558 5 977 376 214 101 51 chr1 51443538 51443676 -145751756 - RLTR23 LTR ERV1 0 430 286 5 977 270 81 0 0 chr1 51444244 51444281 -145751151 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 977 225 357 54 31 chr1 51444724 51444854 -145750578 - L2a LINE L2 -280 3146 3014 5 977 1120 69 7 7 chr1 51445351 51445497 -145749935 + B1_Mus1 SINE Alu 2 147 -1 5 977 23 0 0 0 chr1 51445736 51445759 -145749673 + AT_rich Low_complexity Low_complexity 1 23 0 5 977 22 0 0 0 chr1 51446839 51446861 -145748571 + AT_rich Low_complexity Low_complexity 1 22 0 5 977 1425 158 0 0 chr1 51448728 51448975 -145746457 - Lx LINE L1 -15 6639 6393 5 977 387 69 0 0 chr1 51448975 51449033 -145746399 + RLTR10A LTR ERVK 1 58 -353 5 977 234 0 0 0 chr1 51449153 51449179 -145746253 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 977 867 277 5 0 chr1 51449548 51449750 -145745682 + MER115 DNA Tip100 478 680 -13 5 977 479 239 77 35 chr1 51449857 51450000 -145745432 - B1F SINE Alu 0 149 1 5 977 359 361 34 56 chr1 51450602 51450781 -145744651 - MER5B DNA MER1_type -2 176 2 5 977 4855 156 48 2 chr1 51451047 51451856 -145743576 - Lx4A LINE L1 -2 7056 6211 6 977 230 356 48 48 chr1 51453714 51453838 -145741594 + ORR1E LTR MaLR 9 132 -227 6 977 243 0 0 0 chr1 51454006 51454033 -145741399 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6 977 219 186 0 0 chr1 51454037 51454080 -145741352 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 977 1815 163 10 109 chr1 51456069 51456462 -145738970 + ORR1B1 LTR MaLR 41 394 0 6 977 2024 134 123 0 chr1 51456648 51456990 -145738442 + ORR1C2 LTR MaLR 1 384 0 6 977 6749 76 47 46 chr1 51457006 51457171 -145738261 - RLTR13D5 LTR ERVK 0 1023 878 6 977 1180 48 7 0 chr1 51457171 51457318 -145738114 - B1_Mus1 SINE Alu 0 148 1 6 977 6749 76 47 46 chr1 51457318 51458174 -145737258 - RLTR13D5 LTR ERVK -146 877 1 6 977 1067 267 87 28 chr1 51461132 51461490 -145733942 - MTE2b LTR MaLR 0 379 1 6 977 469 268 67 55 chr1 51461753 51461960 -145733472 - MIRb SINE MIR -39 229 10 6 977 1521 237 46 85 chr1 51462974 51463517 -145731915 + RLTR12B LTR ERVK 1 522 -6 6 977 212 278 56 0 chr1 51464139 51464193 -145731239 - MER5B DNA MER1_type -19 159 103 6 977 193 53 51 26 chr1 51465138 51465177 -145730255 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 6 977 1148 55 7 0 chr1 51465445 51465590 -145729842 + B1_Mus1 SINE Alu 2 147 -1 6 977 525 104 0 0 chr1 51465681 51465758 -145729674 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 6 977 234 156 0 0 chr1 51465755 51465800 -145729632 + CT-rich Low_complexity Low_complexity 2 46 0 6 977 961 314 104 10 chr1 51465810 51466215 -145729217 - MLT1F LTR MaLR -95 453 11 6 977 490 287 56 24 chr1 51466452 51466759 -145728673 - L1MA6 LINE L1 -1752 5892 5599 6 977 1536 200 100 137 chr1 51466862 51467372 -145728060 - RLTR18B LTR ERVK -5 507 17 6 977 2948 154 90 54 chr1 51467372 51467962 -145727470 + RMER19B LTR ERVK 292 902 0 6 977 2635 154 34 0 chr1 51467963 51468404 -145727028 + Lx4A LINE L1 6600 7055 -3 6 977 208 373 97 42 chr1 51468794 51469042 -145726390 + L2a LINE L2 2919 3192 -234 6 977 432 0 0 0 chr1 51469042 51469090 -145726342 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 977 208 373 97 42 chr1 51469090 51469202 -145726230 + L2a LINE L2 3193 3299 -127 6 977 24 32 0 0 chr1 51469536 51469567 -145725865 + AT_rich Low_complexity Low_complexity 1 31 0 6 977 761 319 104 14 chr1 51469633 51469741 -145725691 - Tigger12A DNA MER2_type -403 388 279 6 977 186 43 0 0 chr1 51469741 51469764 -145725668 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 977 761 319 104 14 chr1 51469764 51470011 -145725421 - Tigger12A DNA MER2_type -513 278 3 6 977 498 266 179 39 chr1 51470197 51470482 -145724950 - LTR37B LTR ERV1 -68 400 76 6 977 489 320 30 118 chr1 51470465 51470795 -145724637 - ORR1E LTR MaLR -16 343 43 6 977 256 355 69 11 chr1 51471496 51471670 -145723762 - MER34 LTR ERV1 -65 477 294 6 977 347 295 83 51 chr1 51471753 51471910 -145723522 - MER34 LTR ERV1 -377 165 4 6 977 216 197 48 16 chr1 51471976 51472038 -145723394 + GA-rich Low_complexity Low_complexity 2 65 0 6 977 185 0 40 0 chr1 51472253 51472278 -145723154 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 977 661 294 0 11 chr1 51473032 51473214 -145722218 + B3A SINE B2 1 180 -18 6 977 3898 97 6 2 chr1 51473947 51474497 -145720935 + L1_Mus4 LINE L1 6079 6630 -6 6 977 1279 108 38 0 chr1 51474552 51474738 -145720694 + B2_Mm2 SINE B2 1 193 -2 6 977 894 96 0 0 chr1 51474747 51474882 -145720550 + (GGGA)n Simple_repeat Simple_repeat 3 137 0 6 977 522 262 106 28 chr1 51475975 51476230 -145719202 - L1MD3 LINE L1 -104 7891 7505 6 977 2333 95 3 58 chr1 51476343 51476689 -145718743 + ORR1A2 LTR MaLR 1 327 0 6 977 259 283 62 0 chr1 51476838 51476951 -145718481 - L1MD3 LINE L1 -552 7443 7324 6 977 312 254 211 0 chr1 51477006 51477120 -145718312 - L1MD3 LINE L1 -851 7031 6894 6 977 242 292 167 0 chr1 51477179 51477371 -145718061 + L2a LINE L2 2287 2510 -909 6 977 725 256 76 44 chr1 51477371 51477620 -145717812 + ORR1D1 LTR MaLR 1 257 -117 6 977 6417 60 20 2 chr1 51477623 51478458 -145716974 + RLTR13B1 LTR ERVK 38 887 -6 6 977 6753 62 12 45 chr1 51478458 51479495 -145715937 - RLTR45-int LTR ERVK -3961 3283 2281 6 977 854 42 17 8 chr1 51479495 51479614 -145715818 + RLTR13B1 LTR ERVK 774 893 0 6 977 456 204 21 0 chr1 51479614 51479707 -145715725 + ORR1D1 LTR MaLR 274 368 -2 6 977 260 333 11 0 chr1 51479771 51479861 -145715571 + L2a LINE L2 2660 2750 -669 6 977 35 0 0 0 chr1 51479865 51479900 -145715532 + AT_rich Low_complexity Low_complexity 1 35 0 6 977 342 0 0 0 chr1 51480060 51480098 -145715334 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 977 244 303 227 9 chr1 51480100 51480210 -145715222 - RSINE1 SINE B4 -29 136 3 6 977 280 324 63 0 chr1 51480240 51480351 -145715081 + L2a LINE L2 2775 2892 -527 6 977 297 135 0 0 chr1 51480417 51480469 -145714963 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 977 292 328 47 67 chr1 51480700 51480893 -145714539 + L2a LINE L2 3129 3317 -109 6 977 581 0 14 0 chr1 51480905 51480974 -145714458 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 6 977 200 206 0 0 chr1 51480979 51481013 -145714419 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 6 977 1448 157 4 39 chr1 51482075 51482354 -145713078 + Lx LINE L1 6378 6646 -8 6 977 912 237 40 0 chr1 51482421 51482619 -145712813 - B3 SINE B2 -9 207 2 6 977 519 344 58 23 chr1 51482850 51483109 -145712323 + Charlie7 DNA MER1_type 68 335 -2277 6 977 382 304 118 6 chr1 51483264 51483433 -145711999 - MER119 DNA MER1_type -196 387 200 6 977 286 270 17 86 chr1 51483837 51484011 -145711421 + L1MC5 LINE L1 7000 7161 -800 6 977 1455 198 34 103 chr1 51484110 51484498 -145710934 + ORR1D1 LTR MaLR 1 361 -13 6 977 183 42 0 0 chr1 51484659 51484683 -145710749 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6 977 1214 58 51 39 chr1 51484683 51484861 -145710571 - B2_Mm2 SINE B2 -14 181 2 6 977 1109 89 7 0 chr1 51484897 51485043 -145710389 - B1_Mus1 SINE Alu 0 148 2 6 977 431 192 197 15 chr1 51485727 51485986 -145709446 + L1MC5 LINE L1 7602 7907 -54 6 977 692 260 48 14 chr1 51485999 51486206 -145709226 + B3 SINE B2 3 216 0 6 977 439 338 7 7 chr1 51486237 51486392 -145709040 + RSINE1 SINE B4 4 158 -7 6 977 306 339 116 0 chr1 51486537 51486649 -145708783 + B1F SINE Alu 7 131 -18 6 977 202 289 213 53 chr1 51486665 51486815 -145708617 + MIR SINE MIR 20 193 -69 6 977 23 0 0 0 chr1 51487282 51487305 -145708127 + AT_rich Low_complexity Low_complexity 1 23 0 6 977 206 167 28 0 chr1 51487552 51487588 -145707844 - MIRb SINE MIR -23 245 209 6 977 34 42 0 0 chr1 51487930 51487978 -145707454 + AT_rich Low_complexity Low_complexity 1 48 0 6 977 180 125 0 0 chr1 51488091 51488123 -145707309 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 977 9373 45 1 5 chr1 51488316 51490266 -145705166 - L1Md_F2 LINE L1 -1 6581 4640 6 977 33851 47 0 3 chr1 51490258 51495802 -145699630 + L1Md_Gf LINE L1 1 5589 -297 6 977 8414 34 2 0 chr1 51495802 51496796 -145698636 + L1Md_T LINE L1 5587 6582 0 6 977 14627 66 7 1 chr1 51496796 51498827 -145696605 - L1Md_F2 LINE L1 -1222 4661 2619 6 977 9479 25 1 0 chr1 51498826 51500000 -145695432 + L1_Mm LINE L1 4323 5497 -386 6 977 778 34 0 0 chr1 51500000 51500088 -145695344 + L1Md_A LINE L1 5498 5585 -298 1 977 8934 36 0 0 chr1 51500089 51501083 -145694349 + L1Md_A LINE L1 5587 6580 -2 1 977 5076 79 0 27 chr1 51501083 51501798 -145693634 - L1_Mm LINE L1 -3254 2629 1934 2 977 267 103 0 0 chr1 51501806 51501845 -145693587 + (T)n Simple_repeat Simple_repeat 1 39 0 3 977 21 36 0 0 chr1 51501904 51501932 -145693500 + AT_rich Low_complexity Low_complexity 1 28 0 4 977 229 244 113 72 chr1 51504138 51504235 -145691197 - ORR1A4 LTR MaLR -7 322 222 5 977 649 271 194 48 chr1 51504435 51504765 -145690667 + MTEa LTR MaLR 2 379 0 6 977 236 291 63 0 chr1 51504767 51504846 -145690586 + L2a LINE L2 3342 3425 -1 7 977 1250 285 77 6 chr1 51505413 51505738 -145689694 + MTD LTR MaLR 71 418 -1 8 977 858 136 0 0 chr1 51505962 51506131 -145689301 + (TG)n Simple_repeat Simple_repeat 1 169 0 9 977 290 266 26 189 chr1 51506944 51507034 -145688398 - B1F SINE Alu 0 149 71 1 977 1113 237 19 0 chr1 51507034 51507245 -145688187 + B3 SINE B2 2 216 0 1 977 290 279 25 185 chr1 51507245 51507329 -145688103 - B1F SINE Alu -79 70 1 1 977 277 265 71 0 chr1 51507399 51507497 -145687935 - MLT1A1 LTR MaLR 0 365 261 1 977 486 285 72 11 chr1 51507533 51507714 -145687718 - MLT1A1 LTR MaLR -216 192 1 1 977 233 342 0 12 chr1 51508916 51508996 -145686436 - MamRep605 Unknown Unknown -337 539 461 1 977 21 0 0 0 chr1 51510375 51510396 -145685036 + AT_rich Low_complexity Low_complexity 1 21 0 1 977 326 344 188 0 chr1 51510804 51510991 -145684441 - MLT1K LTR MaLR -38 557 335 1 978 218 281 16 0 chr1 51512742 51512806 -145682626 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 978 324 70 0 0 chr1 51512806 51512849 -145682583 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 978 4693 58 0 2 chr1 51512898 51513452 -145681980 - L1Md_F2 LINE L1 0 6582 6030 1 978 638 297 75 23 chr1 51514335 51514549 -145680883 + ORR1D2 LTR MaLR 129 353 -17 1 978 623 269 143 12 chr1 51514817 51515076 -145680356 - MT2A LTR ERVL -11 522 230 2 978 303 192 76 13 chr1 51515978 51516057 -145679375 + LTR41 LTR ERVL 79 162 -606 2 978 382 202 173 0 chr1 51516339 51516443 -145678989 + B3A SINE B2 3 124 -74 2 978 300 291 23 0 chr1 51516980 51517066 -145678366 - L1MCa LINE L1 -5355 1153 1066 2 978 755 302 73 10 chr1 51517119 51517420 -145678012 - L1MCa LINE L1 -6150 358 39 2 978 484 245 111 13 chr1 51517432 51517585 -145677847 - MER2 DNA MER2_type -175 170 3 2 978 340 221 245 67 chr1 51517811 51518108 -145677324 - L1MC5 LINE L1 -940 7021 6672 2 978 1032 60 0 8 chr1 51518462 51518596 -145676836 + B1_Mm SINE Alu 7 139 -8 2 978 250 296 38 75 chr1 51518719 51518767 -145676665 - ID_B1 SINE B4 -100 124 23 2 978 303 207 17 0 chr1 51518767 51518825 -145676607 - ID4_ SINE ID -3 80 22 2 978 289 318 77 32 chr1 51519317 51519473 -145675959 - MLT1H2 LTR MaLR -297 192 30 2 978 785 200 189 16 chr1 51519457 51519701 -145675731 + RMER4B LTR ERVK 16 301 -284 3 978 428 239 11 11 chr1 51519712 51519805 -145675627 + RMER4B LTR ERVK 343 435 -150 3 978 192 348 0 14 chr1 51520971 51521041 -145674391 + MIRm SINE MIR 43 111 -165 3 978 960 104 96 0 chr1 51521412 51521547 -145673885 + B1_Mus1 SINE Alu 1 148 0 3 978 287 247 256 30 chr1 51521872 51522106 -145673326 + L1ME2z LINE L1 6015 6301 -143 3 978 213 333 0 15 chr1 51522805 51522872 -145672560 - MIRc SINE MIR -169 99 34 3 978 862 229 45 0 chr1 51523066 51523245 -145672187 + B3 SINE B2 3 189 -27 3 978 1057 97 136 24 chr1 51523712 51523881 -145671551 - B2_Mm2 SINE B2 -7 188 1 3 978 775 189 36 12 chr1 51525378 51525544 -145669888 + B2_Mm2 SINE B2 12 181 -14 3 978 544 231 26 71 chr1 51527132 51527286 -145668146 + B1_Mur1 SINE Alu 1 147 -2 3 978 33 80 0 0 chr1 51529244 51529319 -145666113 + AT_rich Low_complexity Low_complexity 1 75 0 3 978 763 235 67 29 chr1 51529493 51529703 -145665729 - ID_B1 SINE B4 -2 222 5 4 978 696 134 22 0 chr1 51530594 51530728 -145664704 + CT-rich Low_complexity Low_complexity 2 138 0 4 978 262 341 68 8 chr1 51530865 51530998 -145664434 + LFSINE_Vert SINE SINE 264 404 -55 4 978 3249 63 0 5 chr1 51531575 51531976 -145663456 + L1_Mus1 LINE L1 6169 6567 0 4 978 385 237 40 0 chr1 51532034 51532110 -145663322 - ID4_ SINE ID 0 83 5 4 978 232 263 150 10 chr1 51532129 51532229 -145663203 - B1F SINE Alu -8 141 28 4 978 220 333 0 0 chr1 51532251 51532305 -145663127 + B4A SINE B4 88 141 -151 4 978 1122 107 22 28 chr1 51532523 51532705 -145662727 + B2_Mm2 SINE B2 15 195 0 4 978 560 152 11 0 chr1 51533963 51534055 -145661377 + B1_Mur4 SINE Alu 53 145 -5 4 978 191 346 108 16 chr1 51536003 51536132 -145659300 + MIRb SINE MIR 84 224 -44 4 978 463 184 81 10 chr1 51536550 51536649 -145658783 + PB1D10 SINE Alu 11 116 -1 5 978 207 0 0 0 chr1 51536683 51536706 -145658726 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 5 978 487 187 218 67 chr1 51536819 51537297 -145658135 + Lx7 LINE L1 7097 7696 0 5 978 373 15 76 0 chr1 51537312 51537378 -145658054 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 978 413 238 130 8 chr1 51537655 51537778 -145657654 + B1_Mus2 SINE Alu 5 142 -5 5 978 484 211 408 32 chr1 51537808 51537965 -145657467 + B3 SINE B2 1 216 0 5 978 254 287 95 11 chr1 51539064 51539159 -145656273 + ID_B1 SINE B4 74 176 -48 5 978 305 214 117 48 chr1 51539077 51539180 -145656252 + PB1D10 SINE Alu 6 115 -2 5 978 524 231 126 5 chr1 51539309 51539481 -145655951 - MT2A LTR ERVL -8 593 352 5 978 817 135 113 0 chr1 51539518 51539651 -145655781 + B1_Mus1 SINE Alu 1 148 0 5 978 1288 121 121 0 chr1 51540560 51540767 -145654665 - Lx LINE L1 -305 6349 6118 6 978 253 338 13 13 chr1 51540904 51540979 -145654453 - RSINE1 SINE B4 -84 81 7 6 978 224 257 66 26 chr1 51541064 51541140 -145654292 + ID SINE ID 3 81 -143 6 978 649 218 13 52 chr1 51541630 51541785 -145653647 - B1F SINE Alu 0 149 1 6 978 398 363 33 29 chr1 51542154 51542395 -145653037 - MLT1H LTR MaLR -205 344 103 6 978 485 290 60 75 chr1 51542665 51542866 -145652566 + B3A SINE B2 1 198 0 6 978 996 289 195 15 chr1 51543438 51543915 -145651517 - MER68 LTR ERVL 0 563 1 6 978 1352 97 11 0 chr1 51544194 51544370 -145651062 + B2_Mm1t SINE B2 2 179 -14 6 978 429 83 364 30 chr1 51544436 51544535 -145650897 + B2_Mm2 SINE B2 47 178 -17 6 978 2943 148 82 31 chr1 51544976 51545011 -145650421 + RLTR20B3 LTR ERVK 4 44 -533 6 978 2392 93 9 61 chr1 51545011 51545356 -145650076 + ORR1A2 LTR MaLR 1 327 0 7 978 2943 148 82 31 chr1 51545356 51545770 -145649662 + RLTR20B3 LTR ERVK 45 471 -106 6 978 474 18 0 0 chr1 51545770 51545825 -145649607 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 978 2943 148 82 31 chr1 51545825 51545920 -145649512 + RLTR20B3 LTR ERVK 472 576 -1 6 978 709 228 7 0 chr1 51546317 51546453 -145648979 - B1_Mus2 SINE Alu 0 147 11 7 978 1501 69 16 21 chr1 51546706 51546899 -145648533 - B2_Mm2 SINE B2 -2 193 2 7 978 1917 268 113 21 chr1 51547783 51547981 -145647451 - Lx8 LINE L1 -28 7445 7224 7 978 387 0 0 0 chr1 51547981 51548024 -145647408 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 978 1917 268 113 21 chr1 51548024 51548481 -145646951 - Lx8 LINE L1 -250 7223 6730 7 978 254 363 152 23 chr1 51548598 51548900 -145646532 - Tigger12A DNA MER2_type -111 623 283 7 978 237 33 0 0 chr1 51549242 51549272 -145646160 + (A)n Simple_repeat Simple_repeat 1 30 0 7 978 470 148 49 0 chr1 51549294 51549375 -145646057 + B3A SINE B2 42 126 -72 7 978 785 133 75 0 chr1 51549430 51549550 -145645882 + B3 SINE B2 2 130 -86 7 978 22 0 0 0 chr1 51549569 51549591 -145645841 + AT_rich Low_complexity Low_complexity 1 22 0 8 978 261 241 0 0 chr1 51549621 51549679 -145645753 - MIR SINE MIR -1 261 204 8 978 1946 216 84 24 chr1 51551147 51551367 -145644065 + RLTR11A LTR ERVK 1 255 -273 8 978 186 43 0 0 chr1 51551367 51551390 -145644042 + (GGA)n Simple_repeat Simple_repeat 2 24 0 8 978 1946 216 84 24 chr1 51551390 51551667 -145643765 + RLTR11A LTR ERVK 256 527 -1 8 978 204 281 0 99 chr1 51551687 51551758 -145643674 + MIRc SINE MIR 15 78 -190 8 978 382 304 26 26 chr1 51552091 51552243 -145643189 - MIRb SINE MIR -37 231 80 8 978 403 107 24 0 chr1 51552243 51552327 -145643105 + (TATAA)n Simple_repeat Simple_repeat 2 87 0 8 978 375 348 111 44 chr1 51552393 51552709 -145642723 - HAL1 LINE L1 0 2507 2171 8 978 264 243 13 13 chr1 51552724 51552799 -145642633 - RMER15 LTR ERVL -48 527 453 8 978 1330 104 18 41 chr1 51552822 51553042 -145642390 - RMER6B LTR ERVK -246 215 1 8 978 522 250 0 24 chr1 51553145 51553268 -145642164 - RMER15-int LTR ERVL -396 4603 4484 8 978 664 227 119 48 chr1 51553344 51553571 -145641861 - RMER15-int LTR ERVL -618 4381 4139 8 978 358 304 108 7 chr1 51553835 51553974 -145641458 - RMER15-int LTR ERVL -2779 2220 2068 8 978 634 335 12 6 chr1 51553998 51554160 -145641272 + B4A SINE B4 28 190 -102 9 978 476 275 7 42 chr1 51554159 51554279 -145641153 + B4A SINE B4 154 270 -22 9 978 2890 130 8 3 chr1 51554279 51554671 -145640761 - ORR1B1 LTR MaLR 0 394 1 9 978 476 275 7 42 chr1 51554671 51554694 -145640738 + B4A SINE B4 271 292 0 9 978 433 239 0 68 chr1 51555481 51555598 -145639834 - RMER15-int LTR ERVL -3417 1582 1474 8 978 319 211 0 0 chr1 51555760 51555817 -145639615 - RMER15-int LTR ERVL -4748 251 195 8 978 269 280 74 61 chr1 51556281 51556490 -145638942 - RMER15 LTR ERVL 0 575 336 8 978 329 297 0 0 chr1 51557421 51557485 -145637947 + ID4_ SINE ID 2 65 -18 9 978 362 292 135 14 chr1 51557665 51558029 -145637403 - HAL1 LINE L1 -1227 1280 873 9 978 222 250 49 16 chr1 51558483 51558544 -145636888 - B1F SINE Alu -86 63 1 9 978 257 221 29 29 chr1 51559275 51559345 -145636087 + C-rich Low_complexity Low_complexity 2 71 0 9 978 320 289 51 22 chr1 51559447 51559585 -145635847 + L2a LINE L2 3227 3368 -58 9 978 802 172 37 0 chr1 51559742 51559876 -145635556 + B1_Mur1 SINE Alu 3 141 -8 9 978 429 20 0 0 chr1 51560616 51560666 -145634766 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 978 533 248 33 0 chr1 51560667 51560788 -145634644 - RSINE1 SINE B4 -38 127 3 1 978 451 290 152 119 chr1 51561250 51561400 -145634032 - MLT1A1 LTR MaLR 0 408 257 1 978 1354 20 0 0 chr1 51561400 51561546 -145633886 - B1_Mm SINE Alu 0 147 2 1 978 451 290 152 119 chr1 51561546 51561790 -145633642 - MLT1A1 LTR MaLR -152 256 1 1 978 439 292 9 0 chr1 51561915 51562021 -145633411 + B1F1 SINE Alu 43 149 0 1 978 251 254 0 2 chr1 51562209 51562276 -145633156 + B1F2 SINE Alu 2 67 -80 1 978 191 276 54 117 chr1 51562354 51562465 -145632967 + MER5B DNA MER1_type 4 107 -71 1 978 492 315 50 56 chr1 51563099 51563452 -145631980 - L1ME3 LINE L1 0 6164 5811 1 978 294 95 0 0 chr1 51563452 51563494 -145631938 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 1 978 268 238 31 47 chr1 51563579 51563707 -145631725 - L1ME3 LINE L1 -431 5809 5684 1 978 254 318 23 8 chr1 51563884 51564014 -145631418 - L1ME1 LINE L1 -13 6166 6035 1 978 355 384 14 0 chr1 51564320 51564466 -145630966 - MIR SINE MIR -21 241 94 1 978 209 200 0 0 chr1 51565099 51565149 -145630283 + A-rich Low_complexity Low_complexity 1 50 0 1 978 645 76 0 0 chr1 51565840 51565932 -145629500 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 978 436 312 0 43 chr1 51566421 51566538 -145628894 + PB1D7 SINE Alu 8 119 -1 1 978 370 352 111 47 chr1 51566543 51566886 -145628546 - MLT1K LTR MaLR -143 452 88 1 978 295 282 174 14 chr1 51566947 51567091 -145628341 + MER5B DNA MER1_type 2 168 -10 1 978 313 340 11 11 chr1 51567554 51567649 -145627783 - Tigger5 DNA MER2_type -2198 208 114 1 978 637 265 18 12 chr1 51567661 51567825 -145627607 + ID_B1 SINE B4 3 167 -57 1 978 1021 260 102 31 chr1 51567850 51568175 -145627257 - Lx6 LINE L1 -1 7459 7112 1 978 225 242 113 0 chr1 51568177 51568239 -145627193 + B1F SINE Alu 81 149 0 1 978 351 213 13 0 chr1 51568232 51568307 -145627125 - Tigger5 DNA MER2_type -2291 115 40 1 978 474 254 104 7 chr1 51569363 51569498 -145625934 + B1F SINE Alu 1 148 -1 1 978 833 201 0 45 chr1 51570662 51570818 -145624614 + B1_Mur4 SINE Alu 2 150 0 1 978 3340 68 0 7 chr1 51570844 51571247 -145624185 - MTB LTR MaLR 0 400 1 1 978 387 0 0 0 chr1 51572191 51572234 -145623198 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 978 333 0 0 0 chr1 51572994 51573031 -145622401 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 978 293 212 69 23 chr1 51573312 51573399 -145622033 + B4 SINE B4 2 92 -200 1 978 356 282 237 0 chr1 51573403 51573534 -145621898 + RSINE1 SINE B4 4 165 0 1 978 326 122 20 0 chr1 51573595 51573644 -145621788 + HAL1-3A_ME LINE L1 1975 2024 -834 1 978 1233 109 44 0 chr1 51573707 51573890 -145621542 - B2_Mm2 SINE B2 -4 191 1 1 978 443 287 36 7 chr1 51574857 51574994 -145620438 + B1F SINE Alu 1 141 -8 1 978 235 296 53 53 chr1 51575008 51575083 -145620349 + ID4_ SINE ID 1 75 -8 1 978 219 360 43 51 chr1 51575083 51575125 -145620307 + ID_B1 SINE B4 1 116 -108 1 978 828 218 0 0 chr1 51576950 51577092 -145618340 + B1_Mur1 SINE Alu 3 144 -5 1 978 523 316 0 22 chr1 51577100 51577239 -145618193 + RSINE1 SINE B4 2 137 -28 1 978 1612 149 254 0 chr1 51577643 51577990 -145617442 + RMER4B LTR ERVK 1 435 -150 1 978 189 0 0 0 chr1 51578008 51578029 -145617403 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 978 1102 77 138 13 chr1 51578071 51578230 -145617202 + B2_Mm1t SINE B2 1 179 -14 1 978 25 31 0 0 chr1 51578271 51578303 -145617129 + AT_rich Low_complexity Low_complexity 1 32 0 1 978 207 186 0 0 chr1 51578303 51578346 -145617086 + A-rich Low_complexity Low_complexity 1 43 0 1 978 1504 302 95 22 chr1 51578760 51579444 -145615988 + L1MB1 LINE L1 5406 6139 -50 1 978 1155 220 23 154 chr1 51579508 51579937 -145615495 - ORR1D1 LTR MaLR -1 373 1 1 978 273 29 0 0 chr1 51580939 51580973 -145614459 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 978 410 275 55 33 chr1 51581072 51581317 -145614115 - L1MB8 LINE L1 -131 6048 5798 1 978 2369 154 62 15 chr1 51581341 51581730 -145613702 - MTB_Mm LTR MaLR 0 407 1 1 978 522 0 0 0 chr1 51582415 51582473 -145612959 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 978 30 0 0 0 chr1 51583033 51583063 -145612369 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 844 260 172 92 chr1 51583272 51583988 -145611444 - RMER13A LTR ERVK -100 760 4 1 978 367 333 14 27 chr1 51584018 51584166 -145611266 + MamRep4096 DNA hAT? 3 148 -278 1 978 748 239 179 74 chr1 51584955 51585307 -145610125 + MLT1B LTR MaLR 1 389 -1 1 978 216 0 0 0 chr1 51585631 51585655 -145609777 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 978 423 180 202 54 chr1 51585669 51585798 -145609634 + B1_Mur2 SINE Alu 1 148 -1 1 978 867 73 0 0 chr1 51585899 51586008 -145609424 + B1_Mus1 SINE Alu 31 139 -9 1 978 189 0 0 0 chr1 51586008 51586029 -145609403 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 978 872 169 7 22 chr1 51586037 51586176 -145609256 + B1_Mur4 SINE Alu 2 138 -12 1 978 324 0 0 0 chr1 51586176 51586212 -145609220 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 978 459 0 0 0 chr1 51586456 51586507 -145608925 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 978 974 156 44 6 chr1 51587743 51587924 -145607508 - B2_Mm2 SINE B2 -6 189 2 1 978 239 371 34 27 chr1 51588585 51588732 -145606700 + L2b LINE L2 3228 3375 0 1 978 198 336 156 7 chr1 51588786 51588921 -145606511 + L3 LINE CR1 4257 4411 -78 1 978 1488 201 106 31 chr1 51589257 51589477 -145605955 + ORR1C2 LTR MaLR 1 231 -153 1 978 2156 99 109 0 chr1 51589477 51589771 -145605661 - ORR1A2 LTR MaLR -1 326 1 1 978 1488 201 106 31 chr1 51589771 51589900 -145605532 + ORR1C2 LTR MaLR 232 376 -8 1 978 303 28 0 0 chr1 51589997 51590033 -145605399 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 978 265 326 147 68 chr1 51590279 51590484 -145604948 - MLT1G3 LTR MaLR -6 589 353 1 978 2545 176 37 5 chr1 51591195 51591601 -145603831 - MTC LTR MaLR -2 419 1 1 978 222 200 0 0 chr1 51591880 51591920 -145603512 - B1F SINE Alu -24 125 86 1 978 254 266 60 60 chr1 51591893 51591966 -145603466 + B4A SINE B4 141 214 -78 1 978 420 20 0 0 chr1 51591966 51592015 -145603417 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1 978 338 298 50 50 chr1 51592046 51592205 -145603227 + RSINE1 SINE B4 5 163 -2 1 978 315 0 0 0 chr1 51592312 51592347 -145603085 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 978 23 33 0 0 chr1 51592683 51592713 -145602719 + AT_rich Low_complexity Low_complexity 1 30 0 1 978 442 282 17 68 chr1 51593128 51593246 -145602186 + PB1D7 SINE Alu 1 112 -8 1 978 480 18 0 0 chr1 51593783 51593840 -145601592 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 978 278 271 14 54 chr1 51593841 51593915 -145601517 - ID SINE ID -152 72 2 1 978 239 240 365 31 chr1 51594039 51594198 -145601234 + MER57D LTR ERV1 9 220 -191 1 978 226 152 0 21 chr1 51594205 51594252 -145601180 + (CACCC)n Simple_repeat Simple_repeat 3 48 0 1 978 267 31 0 0 chr1 51594256 51594288 -145601144 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 978 2094 168 80 32 chr1 51594342 51594742 -145600690 - MTC LTR MaLR 0 421 3 1 978 587 252 7 0 chr1 51594742 51594872 -145600560 + MER57D LTR ERV1 278 408 -3 1 978 234 311 16 146 chr1 51595043 51595235 -145600197 + MER46C DNA MER2_type 9 175 -163 1 978 218 277 0 0 chr1 51595792 51595839 -145599593 + polypyrimidine Low_complexity Low_complexity 5 51 0 1 978 423 0 0 0 chr1 51596330 51596377 -145599055 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 978 515 201 18 6 chr1 51598365 51598535 -145596897 + (TA)n Simple_repeat Simple_repeat 2 173 0 1 978 392 0 21 0 chr1 51598819 51598867 -145596565 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 978 713 56 0 0 chr1 51598867 51598957 -145596475 - B1_Mus2 SINE Alu -10 137 48 1 978 238 276 64 26 chr1 51598900 51598978 -145596454 - RLTR25B LTR ERVK -519 509 429 1 978 922 314 15 11 chr1 51599167 51599441 -145595991 - B4A SINE B4 -17 275 1 1 978 225 357 110 51 chr1 51599785 51599903 -145595529 + MLT1I LTR MaLR 152 276 -135 1 978 666 288 7 7 chr1 51599903 51600043 -145595389 + RSINE1 SINE B4 3 142 -23 1 978 423 0 0 0 chr1 51600284 51600331 -145595101 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 978 1407 299 128 8 chr1 51600511 51601144 -145594288 - Lx8 LINE L1 -13 7460 6752 1 978 797 272 27 9 chr1 51601227 51601446 -145593986 - Lx8 LINE L1 -829 6644 6422 1 978 430 226 66 0 chr1 51601459 51601565 -145593867 + L1MC4 LINE L1 6726 6838 -1157 1 978 7351 19 0 0 chr1 51601753 51602590 -145592842 - L1_Mm LINE L1 -511 5372 4536 1 978 7084 34 0 0 chr1 51602809 51603593 -145591839 + L1Md_T LINE L1 5799 6582 0 1 978 647 228 20 27 chr1 51603718 51603867 -145591565 - B1_Mur1 SINE Alu 0 149 2 1 978 759 302 93 48 chr1 51604017 51604420 -145591012 + L1MC4 LINE L1 7482 7889 -153 1 978 1444 72 16 16 chr1 51604420 51604603 -145590829 + B2_Mm2 SINE B2 1 183 -12 1 978 759 302 93 48 chr1 51604603 51604735 -145590697 + L1MC4 LINE L1 7890 8041 -1 1 978 564 239 37 107 chr1 51604820 51605007 -145590425 + MER20 DNA MER1_type 24 197 -22 1 978 245 280 41 51 chr1 51605020 51605118 -145590314 + B3A SINE B2 1 97 -101 1 978 220 316 18 0 chr1 51605299 51605356 -145590076 + ID SINE ID 21 78 -146 1 978 493 293 44 38 chr1 51606344 51606610 -145588822 - MER58B DNA MER1_type -14 327 56 1 978 359 239 75 61 chr1 51606967 51607114 -145588318 - L1MA9 LINE L1 -2 6310 6162 1 978 468 62 0 0 chr1 51607265 51607329 -145588103 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 978 873 240 75 64 chr1 51607343 51607624 -145587808 - B4A SINE B4 -8 284 1 1 978 333 313 94 28 chr1 51607624 51607900 -145587532 - L1M5 LINE L1 -1990 5892 5584 2 978 2432 189 74 25 chr1 51608565 51608991 -145586441 + RLTR20A LTR ERVK 1 439 -102 2 978 491 0 17 0 chr1 51608991 51609050 -145586382 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 978 2432 189 74 25 chr1 51609050 51609139 -145586293 + RLTR20A LTR ERVK 440 540 -1 2 978 432 0 0 0 chr1 51609422 51609470 -145585962 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 978 215 297 15 15 chr1 51609504 51609569 -145585863 - B4A SINE B4 -225 67 3 2 978 252 248 65 56 chr1 51609734 51609841 -145585591 + Charlie4z DNA MER1_type 33 140 -27 2 978 307 295 28 83 chr1 51610667 51610811 -145584621 - B3A SINE B2 -11 187 52 2 978 2022 221 13 8 chr1 51610891 51611278 -145584154 + Lx7 LINE L1 6432 6820 -876 2 978 11012 142 17 58 chr1 51611912 51613413 -145582019 - L1VL2 LINE L1 -2599 3284 1878 2 978 839 72 172 23 chr1 51613413 51613541 -145581891 - B1_Mm SINE Alu 0 147 1 2 978 1470 89 0 20 chr1 51613547 51613742 -145581690 - B2_Mm2 SINE B2 -3 192 2 2 978 11012 124 30 43 chr1 51613742 51614446 -145580986 - L1VL2 LINE L1 -4006 1877 1150 2 978 30110 38 5 14 chr1 51614441 51615373 -145580059 - L1Md_F2 LINE L1 -2 6580 5657 2 978 1210 63 0 0 chr1 51615373 51615532 -145579900 - L1Md_F3 LINE L1 -16 6568 6410 2 978 30110 74 8 6 chr1 51615532 51620071 -145575361 - L1Md_F2 LINE L1 -227 5656 300 2 978 2708 205 49 37 chr1 51620085 51620679 -145574753 + Lx7 LINE L1 6805 7405 -291 2 978 327 280 0 0 chr1 51620750 51620825 -145574607 + RLTR24 LTR ERV1 1 75 -454 2 978 666 228 62 66 chr1 51621175 51621419 -145574013 + Lx7 LINE L1 7449 7691 -5 2 978 31 0 0 0 chr1 51621902 51621933 -145573499 + AT_rich Low_complexity Low_complexity 1 31 0 2 978 832 202 145 26 chr1 51622163 51622356 -145573076 - B3 SINE B2 0 216 1 2 978 252 0 0 0 chr1 51622482 51622510 -145572922 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 978 315 281 164 8 chr1 51622523 51622645 -145572787 - B1F SINE Alu -8 141 1 2 978 714 255 109 5 chr1 51623975 51624176 -145571256 - ID_B1 SINE B4 -1 223 2 2 978 719 217 8 96 chr1 51624232 51624421 -145571011 - B3A SINE B2 0 216 43 2 978 255 278 165 11 chr1 51624405 51624496 -145570936 - B1F SINE Alu -35 114 10 2 978 276 296 24 12 chr1 51625471 51625553 -145569879 + PB1D10 SINE Alu 2 84 -33 2 978 276 30 0 0 chr1 51625554 51625587 -145569845 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 978 26 82 0 0 chr1 51625587 51625648 -145569784 + AT_rich Low_complexity Low_complexity 1 61 0 2 978 272 328 0 0 chr1 51625674 51625732 -145569700 + ID SINE ID 23 80 -144 2 978 618 118 0 0 chr1 51625928 51626030 -145569402 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 978 547 273 20 27 chr1 51626040 51626187 -145569245 - RSINE1 SINE B4 -16 149 4 2 978 315 192 0 0 chr1 51626684 51626762 -145568670 + (CCA)n Simple_repeat Simple_repeat 2 79 0 2 978 552 231 77 0 chr1 51627026 51627112 -145568320 + B4A SINE B4 131 217 -75 2 978 539 108 11 0 chr1 51627112 51627205 -145568227 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 2 978 552 231 77 0 chr1 51627205 51627261 -145568171 + B4A SINE B4 218 282 -10 2 978 315 226 35 35 chr1 51627356 51627443 -145567989 - Tigger7 DNA MER2_type -69 2422 2336 2 978 2271 284 58 70 chr1 51627449 51628173 -145567259 - Tigger7 DNA MER2_type -1682 809 93 2 978 735 233 238 0 chr1 51628173 51628345 -145567087 - ID_B1 SINE B4 -8 216 4 2 978 2271 284 58 70 chr1 51628345 51628416 -145567016 - Tigger7 DNA MER2_type -2399 92 24 2 978 613 293 24 0 chr1 51629095 51629259 -145566173 - MER44D DNA MER2_type -514 191 24 2 978 1005 268 112 6 chr1 51629398 51629710 -145565722 + ORR1E LTR MaLR 9 353 -6 2 978 1669 231 56 45 chr1 51629972 51630458 -145564974 + RLTR11A2 LTR ERVK 12 502 -25 2 978 384 318 39 0 chr1 51630725 51630854 -145564578 + MER5B DNA MER1_type 43 176 -2 2 978 2829 65 29 0 chr1 51631043 51631089 -145564343 - MTB LTR MaLR -7 393 348 2 978 297 0 0 0 chr1 51631089 51631122 -145564310 + (GGGTG)n Simple_repeat Simple_repeat 5 37 0 2 978 2829 65 29 0 chr1 51631122 51631457 -145563975 - MTB LTR MaLR -53 347 2 2 978 887 128 8 0 chr1 51632300 51632433 -145562999 + Lx2 LINE L1 6510 6643 -354 2 978 1175 146 23 32 chr1 51632433 51632652 -145562780 + Lx2 LINE L1 6775 6991 -6 2 978 1320 41 0 0 chr1 51632979 51633125 -145562307 + B1_Mm SINE Alu 2 147 0 2 978 267 54 0 0 chr1 51633125 51633162 -145562270 + (A)n Simple_repeat Simple_repeat 1 37 0 2 978 198 0 0 0 chr1 51633179 51633201 -145562231 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 978 22 70 0 0 chr1 51633289 51633332 -145562100 + AT_rich Low_complexity Low_complexity 1 43 0 2 978 4990 102 41 46 chr1 51633657 51634437 -145560995 + Lx LINE L1 5877 6652 -2 2 978 313 338 166 40 chr1 51634551 51634878 -145560554 - MLT1A0 LTR MaLR -22 368 1 2 978 5232 207 76 32 chr1 51634981 51636072 -145559360 + Lx9 LINE L1 6364 7476 -168 2 978 465 19 0 0 chr1 51636072 51636126 -145559306 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 978 5232 207 76 32 chr1 51636126 51636256 -145559176 + Lx9 LINE L1 7477 7639 -5 2 978 784 147 80 14 chr1 51636297 51636435 -145558997 - B1_Mm SINE Alu 0 147 1 2 978 390 287 56 32 chr1 51636566 51636782 -145558650 - L1MB8 LINE L1 -155 6023 5803 2 978 548 179 83 28 chr1 51636801 51636910 -145558522 - PB1D10 SINE Alu 0 117 3 2 978 246 331 102 36 chr1 51637780 51638165 -145557267 - MLT1J1 LTR MaLR -5 439 2 2 978 224 103 33 33 chr1 51638876 51638936 -145556496 + CT-rich Low_complexity Low_complexity 3 62 0 2 978 665 271 50 35 chr1 51640493 51640692 -145554740 - B3 SINE B2 -12 204 3 2 978 192 409 53 29 chr1 51641089 51641298 -145554134 + MIRb SINE MIR 1 214 -54 2 978 267 79 0 0 chr1 51641403 51641441 -145553991 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 978 258 276 0 112 chr1 51641712 51641810 -145553622 - LTR82B Low_complexity ERVL -74 756 670 2 978 595 296 62 49 chr1 51641813 51642171 -145553261 + ORR1E LTR MaLR 1 359 -15 2 978 427 250 31 31 chr1 51642211 51642339 -145553093 - LTR82B Low_complexity ERVL -199 631 504 2 979 1266 82 129 0 chr1 51642551 51642722 -145552710 + B2_Mm2 SINE B2 1 193 -2 2 979 811 179 45 0 chr1 51643652 51643786 -145551646 + B1_Mur1 SINE Alu 2 141 -8 2 979 1169 117 6 0 chr1 51643797 51643960 -145551472 + B2_Mm1t SINE B2 2 165 -28 2 979 565 312 6 37 chr1 51644788 51644951 -145550481 - RSINE1 SINE B4 -6 159 2 2 979 4106 111 35 29 chr1 51645549 51646145 -145549287 + MT2B LTR ERVL 2 601 0 2 979 636 281 177 8 chr1 51646241 51646478 -145548954 - LTR82B Low_complexity ERVL -403 427 151 2 979 370 291 70 44 chr1 51646416 51646574 -145548858 - LTR82B Low_complexity ERVL -668 162 1 2 979 229 167 0 0 chr1 51648282 51648318 -145547114 - MARNA DNA Mariner -344 242 207 2 979 445 285 91 36 chr1 51648674 51648869 -145546563 - MIRb SINE MIR -50 218 15 2 979 434 192 13 102 chr1 51650473 51650634 -145544798 + L1ME1 LINE L1 5755 5899 -280 2 979 280 313 26 9 chr1 51650748 51650864 -145544568 + L1MA10 LINE L1 6217 6334 0 2 979 746 237 67 16 chr1 51652429 51652622 -145542810 + B3A SINE B2 1 203 -13 2 979 522 0 0 0 chr1 51654793 51654851 -145540581 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 2 979 860 203 0 7 chr1 51654851 51654990 -145540442 - B1_Mur4 SINE Alu -12 138 1 2 979 568 314 58 105 chr1 51656744 51657171 -145538261 + MTD LTR MaLR 1 407 -12 2 979 408 241 0 0 chr1 51657763 51657842 -145537590 - ID4 SINE ID 0 83 5 2 979 236 309 119 0 chr1 51657801 51657885 -145537547 - ZP3AR Satellite Satellite -72 140 47 2 979 8493 207 41 54 chr1 51657980 51658460 -145536972 - Lx7 LINE L1 -17 7679 7255 2 979 4089 58 53 8 chr1 51658460 51658965 -145536467 + L1_Mus1 LINE L1 6040 6567 0 2 979 8493 207 41 54 chr1 51658965 51660440 -145534992 - Lx7 LINE L1 -442 7254 5749 2 979 1254 49 0 27 chr1 51660778 51660926 -145534506 + B1_Mm SINE Alu 4 147 0 2 979 24 0 0 0 chr1 51661024 51661048 -145534384 + AT_rich Low_complexity Low_complexity 1 24 0 2 979 231 296 20 10 chr1 51661234 51661333 -145534099 + PB1D10 SINE Alu 17 116 -1 2 979 984 133 24 12 chr1 51661464 51661631 -145533801 + Lx LINE L1 6478 6646 -8 2 979 1153 96 0 11 chr1 51661662 51661842 -145533590 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2 979 882 174 0 0 chr1 51662003 51662147 -145533285 - B1_Mur4 SINE Alu -1 149 6 2 979 346 229 0 132 chr1 51662047 51662168 -145533264 - MT2B LTR ERVL -344 257 153 2 979 681 305 80 15 chr1 51662297 51662560 -145532872 - B4A SINE B4 -12 280 1 2 979 27 0 0 0 chr1 51662615 51662642 -145532790 + AT_rich Low_complexity Low_complexity 1 27 0 2 979 266 284 83 45 chr1 51662782 51662915 -145532517 + MT2B LTR ERVL 133 270 -331 2 979 520 245 48 6 chr1 51662810 51662954 -145532478 + ID_B1 SINE B4 84 236 -56 2 979 287 236 16 17 chr1 51663577 51663645 -145531787 + PB1D10 SINE Alu 13 82 -38 2 979 510 17 0 0 chr1 51663645 51663704 -145531728 + (CAGAGA)n Simple_repeat Simple_repeat 1 59 0 2 979 216 275 36 48 chr1 51663704 51663721 -145531711 + PB1D7 SINE Alu 83 99 -21 2 979 757 254 42 31 chr1 51663786 51663977 -145531455 + B3A SINE B2 5 197 -1 2 979 541 261 94 62 chr1 51666878 51666930 -145528502 - B3A SINE B2 0 198 155 2 979 456 67 0 0 chr1 51666930 51666990 -145528442 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 979 541 261 94 62 chr1 51666990 51667129 -145528303 - B3A SINE B2 -44 154 1 2 979 718 285 79 8 chr1 51667526 51667767 -145527665 - RMER15 LTR ERVL -2 573 316 2 979 207 0 0 0 chr1 51668158 51668181 -145527251 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 979 514 268 43 14 chr1 51669035 51669175 -145526257 - B1_Mur1 SINE Alu 0 149 6 2 979 461 17 0 17 chr1 51669251 51669310 -145526122 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 2 979 1121 44 7 0 chr1 51669310 51669445 -145525987 - B1_Mm SINE Alu -10 137 2 2 979 516 219 35 0 chr1 51669505 51669619 -145525813 + B1F2 SINE Alu 21 138 -11 2 979 527 227 102 0 chr1 51669656 51669784 -145525648 + B1F SINE Alu 5 145 -4 2 979 752 254 47 121 chr1 51670131 51670453 -145524979 - MTEa LTR MaLR -81 298 1 3 979 234 192 0 0 chr1 51670491 51670543 -145524889 + CT-rich Low_complexity Low_complexity 1 52 0 3 979 910 188 131 25 chr1 51671028 51671311 -145524121 + RLTR20C LTR ERVK 1 313 -221 3 979 679 210 6 53 chr1 51671302 51671473 -145523959 + RLTR20C LTR ERVK 416 578 0 3 979 1977 151 6 17 chr1 51671505 51671862 -145523570 - ORR1B1 LTR MaLR 0 394 42 3 979 396 0 0 0 chr1 51671980 51672024 -145523408 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 979 310 184 41 49 chr1 51672879 51672960 -145522472 - ORR1A3 LTR MaLR -285 109 24 3 979 271 238 71 48 chr1 51672967 51673051 -145522381 + MER57F LTR ERV1 9 94 -278 3 979 441 256 30 15 chr1 51673148 51673279 -145522153 + MER57F LTR ERV1 299 431 -5 3 979 428 322 6 60 chr1 51673874 51674056 -145521376 - MER5B DNA MER1_type 0 178 7 3 979 226 301 0 0 chr1 51676026 51676093 -145519339 + B1F2 SINE Alu 2 68 -81 3 979 476 295 76 65 chr1 51676278 51676554 -145518878 + B4A SINE B4 2 280 -12 3 979 226 241 184 0 chr1 51677504 51677591 -145517841 + MER44D DNA MER2_type 16 118 -587 3 979 308 269 54 14 chr1 51677563 51677710 -145517722 + MER44D DNA MER2_type 467 618 -87 3 979 592 228 117 15 chr1 51677778 51677974 -145517458 + B3 SINE B2 1 216 0 3 979 314 222 0 40 chr1 51678113 51678188 -145517244 + MER44D DNA MER2_type 613 684 -21 3 979 512 277 152 0 chr1 51678553 51678737 -145516695 - MER58B DNA MER1_type -42 299 88 3 979 636 250 6 35 chr1 51679912 51679971 -145515461 + MTE2b LTR MaLR 16 71 -308 3 979 2099 167 77 0 chr1 51679971 51680337 -145515095 + ORR1B1 LTR MaLR 1 394 0 3 979 636 250 6 35 chr1 51680337 51680451 -145514981 + MTE2b LTR MaLR 72 184 -195 3 979 255 114 0 0 chr1 51680580 51680624 -145514808 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 979 251 229 0 0 chr1 51680813 51680861 -145514571 + MTE2b LTR MaLR 228 275 -104 3 979 576 349 62 11 chr1 51680878 51681150 -145514282 + MTE-int LTR MaLR 14 299 -1281 3 979 1887 124 19 3 chr1 51681332 51681648 -145513784 - ORR1A4 LTR MaLR -8 321 1 3 979 189 0 0 0 chr1 51682088 51682109 -145513323 + (A)n Simple_repeat Simple_repeat 1 21 0 3 979 405 0 0 0 chr1 51682391 51682436 -145512996 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 979 372 111 0 0 chr1 51682910 51682973 -145512459 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 979 1050 177 18 41 chr1 51682984 51683202 -145512230 - URR1B DNA MER1_type -6 219 7 3 979 315 286 95 0 chr1 51684331 51684478 -145510954 + MER115 DNA Tip100 519 679 -14 3 979 993 41 0 0 chr1 51685708 51685830 -145509602 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 3 979 1639 228 40 24 chr1 51685980 51686324 -145509108 + Lx5 LINE L1 6671 7027 -23 3 979 3225 48 8 2 chr1 51686324 51686718 -145508714 - MTA_Mm LTR MaLR 0 396 1 3 979 1639 228 40 24 chr1 51686718 51686733 -145508699 + Lx5 LINE L1 7028 7037 -13 3 979 324 120 0 0 chr1 51686733 51686783 -145508649 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 3 979 1639 228 40 24 chr1 51686783 51686795 -145508637 + Lx5 LINE L1 7038 7049 -1 3 979 1446 136 214 78 chr1 51687095 51687454 -145507978 - RLTR25B LTR ERVK 0 1028 621 3 979 195 256 0 0 chr1 51687821 51687864 -145507568 - MIR SINE MIR -59 149 107 3 979 207 88 0 0 chr1 51687931 51687965 -145507467 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 979 23 0 0 0 chr1 51688012 51688035 -145507397 + AT_rich Low_complexity Low_complexity 1 23 0 3 979 192 77 0 0 chr1 51688953 51688979 -145506453 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 979 274 241 11 92 chr1 51689592 51689679 -145505753 - MER119 DNA MER1_type -27 556 477 3 979 198 0 0 0 chr1 51689735 51689757 -145505675 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 979 226 176 20 0 chr1 51690052 51690103 -145505329 + T-rich Low_complexity Low_complexity 4 55 0 3 979 704 207 7 15 chr1 51690105 51690242 -145505190 - B1_Mur1 SINE Alu -2 147 12 3 979 706 285 31 130 chr1 51691393 51691716 -145503716 - B4A SINE B4 0 292 2 3 979 306 0 0 0 chr1 51692138 51692172 -145503260 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 979 333 335 42 24 chr1 51695069 51695237 -145500195 - Arthur1A DNA Tip100 0 177 7 3 979 246 105 0 0 chr1 51695735 51695773 -145499659 + (T)n Simple_repeat Simple_repeat 1 38 0 3 979 281 263 0 26 chr1 51696472 51696550 -145498882 + ID2 SINE ID 2 77 -6 3 979 1295 287 128 11 chr1 51696573 51697198 -145498234 + L1MB7 LINE L1 5493 6183 -1 3 979 180 0 0 0 chr1 51697945 51697965 -145497467 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 979 253 327 71 26 chr1 51699111 51699224 -145496208 + MIRb SINE MIR 102 219 -49 3 979 727 145 156 6 chr1 51699422 51699582 -145495850 + B2_Mm2 SINE B2 2 185 -10 3 979 1147 81 0 7 chr1 51699590 51699739 -145495693 + B1_Mus1 SINE Alu 1 148 0 3 979 767 40 10 0 chr1 51699877 51699976 -145495456 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 3 979 228 426 0 0 chr1 51700157 51700265 -145495167 - MIRm SINE MIR -11 265 158 3 979 556 229 8 0 chr1 51702900 51703018 -145492414 - RSINE1 SINE B4 -41 124 6 3 979 297 109 0 0 chr1 51703023 51703069 -145492363 + (CACCAT)n Simple_repeat Simple_repeat 4 49 0 3 979 223 333 89 44 chr1 51703591 51703726 -145491706 + L2b LINE L2 3226 3366 -9 3 979 889 96 138 13 chr1 51705303 51705462 -145489970 + B2_Mm1t SINE B2 1 179 -14 3 979 217 139 208 62 chr1 51705494 51705624 -145489808 + B2_Mm2 SINE B2 47 195 0 3 979 469 163 12 0 chr1 51705685 51705771 -145489661 + B1_Mur3 SINE Alu 50 136 -13 3 979 217 0 61 0 chr1 51705771 51705804 -145489628 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 979 267 231 115 0 chr1 51708697 51708775 -145486657 + MTE-int LTR MaLR 8 94 -1486 3 979 16755 50 1 0 chr1 51708780 51711476 -145483956 + L1Md_F2 LINE L1 3833 6530 -52 3 979 1535 304 129 92 chr1 51711490 51712713 -145482719 + MTE-int LTR MaLR 91 1521 -59 3 979 216 0 0 0 chr1 51713092 51713116 -145482316 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 979 586 194 112 0 chr1 51713144 51713278 -145482154 - B3 SINE B2 -67 149 1 3 979 3735 269 72 34 chr1 51713336 51713443 -145481989 - Lx8 LINE L1 -39 7434 7333 3 979 461 17 17 0 chr1 51713443 51713501 -145481931 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 979 3735 269 72 34 chr1 51713501 51714377 -145481055 - Lx8 LINE L1 -141 7332 6415 3 979 465 19 0 0 chr1 51714377 51714431 -145481001 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 979 3735 269 72 34 chr1 51714431 51714724 -145480708 - Lx8 LINE L1 -1059 6414 6109 3 979 666 0 0 0 chr1 51715363 51715437 -145479995 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 3 979 234 376 12 97 chr1 51715531 51715861 -145479571 - Lx8 LINE L1 -2 7471 7170 3 979 451 306 208 14 chr1 51716504 51716931 -145478501 - Lx9 LINE L1 -1 7643 7134 3 979 2746 76 11 3 chr1 51716938 51717293 -145478139 - L1_Mus2 LINE L1 -4 6562 6205 3 979 34944 51 4 1 chr1 51718266 51724441 -145470991 - L1Md_F2 LINE L1 -1 6581 387 3 979 564 281 83 35 chr1 51724464 51724693 -145470739 - RMER15 LTR ERVL 0 575 336 3 979 1728 5 0 0 chr1 51724967 51725163 -145470269 + L1Md_T LINE L1 6375 6570 -12 3 979 237 316 128 13 chr1 51725187 51725362 -145470070 + MIRb SINE MIR 58 255 -13 3 979 714 193 22 7 chr1 51725539 51725675 -145469757 - B1_Mur3 SINE Alu -9 140 3 3 979 449 147 106 35 chr1 51725965 51726078 -145469354 + RLTR15 LTR ERVK 1 121 -238 3 979 334 264 67 28 chr1 51726181 51726360 -145469072 + RLTR15 LTR ERVK 155 340 -19 3 979 1411 80 27 0 chr1 51726521 51726708 -145468724 + B2_Mm1t SINE B2 2 193 0 3 979 305 237 250 0 chr1 51727138 51727214 -145468218 - ID_B1 SINE B4 -102 122 28 3 979 312 27 0 0 chr1 51727353 51727390 -145468042 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 979 459 0 0 0 chr1 51727390 51727440 -145467992 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 979 2845 82 5 3 chr1 51727560 51727949 -145467483 - L1_Mus3 LINE L1 0 6638 6249 3 979 387 0 0 0 chr1 51728581 51728624 -145466808 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 979 348 247 43 11 chr1 51728712 51728806 -145466626 - B4A SINE B4 -103 189 93 3 979 1052 295 37 12 chr1 51728864 51729293 -145466139 + L1MB3 LINE L1 5713 6152 -31 3 979 19158 68 16 19 chr1 51730173 51732190 -145463242 + L1VL4 LINE L1 206 2256 -1303 3 979 462 79 0 0 chr1 51732190 51732253 -145463179 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 979 19158 58 24 28 chr1 51732253 51732615 -145462817 + L1VL4 LINE L1 2257 2643 -916 3 979 1134 14 21 0 chr1 51732615 51732759 -145462673 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3 979 743 41 20 0 chr1 51732764 51732862 -145462570 + (GGGA)n Simple_repeat Simple_repeat 2 101 0 3 979 19158 58 24 28 chr1 51732862 51733670 -145461762 + L1VL4 LINE L1 2644 3400 -159 3 979 1240 104 28 0 chr1 51733670 51733852 -145461580 - B2_Mm2 SINE B2 -7 188 2 3 979 19158 58 24 28 chr1 51733852 51733975 -145461457 + L1VL4 LINE L1 3401 3513 -46 3 979 848 49 205 0 chr1 51733975 51734097 -145461335 + B1_Mus1 SINE Alu 2 148 0 3 979 332 85 0 0 chr1 51734124 51734183 -145461249 + L1VL4 LINE L1 3501 3559 0 3 979 1011 156 0 0 chr1 51734232 51734411 -145461021 + GA-rich Low_complexity Low_complexity 2 180 0 3 979 375 279 118 0 chr1 51735078 51735239 -145460193 - L1_Mur3 LINE L1 -783 5097 4918 3 979 649 256 107 34 chr1 51735794 51736085 -145459347 - L1M3 LINE L1 -1191 4949 4638 3 979 312 215 0 15 chr1 51736097 51736163 -145459269 + PB1D9 SINE Alu 2 66 -54 3 979 569 253 54 0 chr1 51736167 51736333 -145459099 - L1_Mur3 LINE L1 -1585 4295 4121 3 979 924 289 120 64 chr1 51736333 51736477 -145458955 + L1MA5A LINE L1 5054 5209 -638 3 979 321 68 0 0 chr1 51736477 51736521 -145458911 + (CAA)n Simple_repeat Simple_repeat 3 46 0 3 979 1004 295 114 67 chr1 51736521 51737229 -145458203 + L1MA5A LINE L1 5210 6007 -1689 3 979 336 24 0 0 chr1 51738398 51738439 -145456993 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 979 240 146 0 24 chr1 51738469 51738511 -145456921 + L1MCc LINE L1 801 841 -5582 3 979 249 252 77 102 chr1 51738573 51738758 -145456674 + L1MC LINE L1 5193 5376 -803 3 979 2385 117 45 72 chr1 51738758 51739200 -145456232 + RLTR23 LTR ERV1 1 430 0 3 979 238 268 19 116 chr1 51739200 51739287 -145456145 + L1MC LINE L1 5377 5455 -724 3 979 865 242 132 29 chr1 51739578 51739820 -145455612 - ORR1D2 LTR MaLR -7 363 97 3 979 2256 134 28 25 chr1 51739819 51740089 -145455343 - RMER6A LTR ERVK -21 735 468 3 979 2841 57 143 139 chr1 51740089 51740599 -145454833 - RLTR1B LTR ERV1 0 512 1 3 979 2256 134 28 25 chr1 51740599 51740763 -145454669 - RMER6A LTR ERVK -289 467 300 3 979 714 78 0 114 chr1 51740764 51740858 -145454574 - RMER6A LTR ERVK -640 116 37 3 979 2230 97 24 62 chr1 51740858 51741198 -145454234 - ORR1A2 LTR MaLR 0 327 1 3 979 714 78 0 114 chr1 51741198 51741234 -145454198 - RMER6A LTR ERVK -720 36 1 3 979 744 156 16 0 chr1 51741322 51741450 -145453982 - B1_Mur4 SINE Alu -20 130 1 4 979 619 289 66 12 chr1 51741970 51742212 -145453220 + RMER5 LTR ERV1 265 519 -15 4 979 189 0 0 0 chr1 51742235 51742256 -145453176 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 4 979 1362 190 151 38 chr1 51742315 51742508 -145452924 - ORR1C2 LTR MaLR 0 384 173 4 979 546 16 0 0 chr1 51742508 51742571 -145452861 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 979 1362 190 151 38 chr1 51742571 51742722 -145452710 - ORR1C2 LTR MaLR -212 172 2 4 979 576 0 0 0 chr1 51743507 51743571 -145451861 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 979 411 21 0 0 chr1 51744065 51744113 -145451319 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 979 1031 161 67 10 chr1 51744306 51744500 -145450932 + ORR1B2 LTR MaLR 17 221 -146 4 979 515 238 82 62 chr1 51744500 51744975 -145450457 - RMER17C LTR ERVK -32 378 1 4 979 820 167 0 39 chr1 51744975 51745125 -145450307 + ORR1B2 LTR MaLR 216 359 -8 4 979 276 270 66 69 chr1 51745889 51746146 -145449286 - MLT2E LTR ERVL -74 554 226 4 979 194 116 23 0 chr1 51747025 51747068 -145448364 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 4 979 180 111 0 0 chr1 51748056 51748083 -145447349 + (CGAT)n Simple_repeat Simple_repeat 1 27 0 4 979 218 32 32 0 chr1 51748737 51748768 -145446664 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 4 979 1673 140 21 51 chr1 51749200 51749531 -145445901 - ORR1A4 LTR MaLR -8 321 1 4 979 715 379 60 41 chr1 51750096 51750583 -145444849 - LTR33 LTR ERVL -2 513 18 4 979 596 132 8 0 chr1 51750698 51750827 -145444605 + (GA)n Simple_repeat Simple_repeat 1 130 0 4 979 2095 164 57 55 chr1 51750831 51751288 -145444144 - MT2A LTR ERVL -75 458 1 4 979 1915 124 104 0 chr1 51751590 51751888 -145443544 - ORR1A4 LTR MaLR 0 329 1 4 979 239 157 2 0 chr1 51752018 51752069 -145443363 + L1M4c LINE L1 1690 1779 -5229 4 979 234 0 0 0 chr1 51752868 51752894 -145442538 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 979 331 232 110 0 chr1 51752894 51752976 -145442456 - ID_B1 SINE B4 -13 211 121 4 979 183 42 0 0 chr1 51753249 51753273 -145442159 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 979 263 224 66 0 chr1 51753355 51753431 -145442001 - ID_B1 SINE B4 0 224 144 4 979 1301 47 93 0 chr1 51754861 51755033 -145440399 + B2_Mm2 SINE B2 1 188 -7 4 979 187 174 108 68 chr1 51755726 51755800 -145439632 - L2c LINE L2 0 3387 3311 4 979 206 250 67 0 chr1 51755788 51755848 -145439584 + L3 LINE CR1 3713 3776 -713 4 979 1859 115 49 0 chr1 51756661 51756965 -145438467 + ORR1A2 LTR MaLR 1 319 -8 4 979 1848 248 8 59 chr1 51757464 51757935 -145437497 + Lx9 LINE L1 6703 7149 -495 4 979 2171 218 15 46 chr1 51757959 51758478 -145436954 + RLTR18B LTR ERVK 1 503 -9 4 979 810 249 123 11 chr1 51758486 51758754 -145436678 + Lx9 LINE L1 7198 7495 -149 4 979 286 172 115 94 chr1 51758783 51758879 -145436553 + Lx8 LINE L1 7375 7472 -1 4 979 706 211 84 108 chr1 51758898 51758936 -145436496 + B3 SINE B2 3 39 -177 4 979 1365 101 48 40 chr1 51758936 51759164 -145436268 + Lx LINE L1 6413 6642 -12 4 979 216 0 0 0 chr1 51759165 51759189 -145436243 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 979 706 211 84 108 chr1 51759189 51759361 -145436071 + B3 SINE B2 40 210 -6 4 979 26 0 0 0 chr1 51759369 51759395 -145436037 + AT_rich Low_complexity Low_complexity 1 26 0 4 979 2507 115 23 47 chr1 51761070 51761564 -145433868 + BGLII_B LTR ERVK 1 434 -7 4 979 503 242 70 25 chr1 51761827 51761984 -145433448 - B4 SINE B4 -128 164 1 4 979 1828 150 156 39 chr1 51762093 51762503 -145432929 + RMER6B LTR ERVK 1 458 -3 4 979 607 289 39 0 chr1 51762664 51762820 -145432612 + RSINE1 SINE B4 4 165 0 4 979 3252 113 45 85 chr1 51764143 51764913 -145430519 - RLTR13D2 LTR ERVK 0 1023 1 4 979 287 289 47 47 chr1 51764917 51765066 -145430366 - MTEa LTR MaLR -228 151 3 4 979 230 320 21 105 chr1 51765591 51765669 -145429763 + B4A SINE B4 16 81 -211 4 979 231 282 24 113 chr1 51765669 51765793 -145429639 + PB1D9 SINE Alu 1 113 -7 4 979 1537 58 16 0 chr1 51766525 51766715 -145428717 + B2_Mm2 SINE B2 1 193 -2 4 979 1547 16 15 66 chr1 51767315 51767512 -145427920 - B2_Mm1a SINE B2 -6 187 1 4 979 21 0 0 0 chr1 51767721 51767742 -145427690 + AT_rich Low_complexity Low_complexity 1 21 0 4 122 38190 45 5 3 chr1 51768084 51774510 -145420922 - L1Md_T LINE L1 0 6585 66 4 980 450 53 0 0 chr1 51774599 51774656 -145420776 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 4 980 1941 116 8 62 chr1 51775333 51775690 -145419742 + ORR1A1 LTR MaLR 1 338 -8 4 980 368 226 58 18 chr1 51776218 51776448 -145418984 + (TA)n Simple_repeat Simple_repeat 1 239 0 4 980 270 271 39 92 chr1 51776535 51776665 -145418767 - MER20 DNA MER1_type -15 204 82 4 980 207 0 0 0 chr1 51776722 51776745 -145418687 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 4 980 607 278 118 5 chr1 51776746 51776941 -145418491 - ID_B1 SINE B4 -6 218 2 4 980 180 0 0 0 chr1 51777844 51777864 -145417568 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 980 511 108 0 47 chr1 51777887 51777994 -145417438 - Lx LINE L1 -4 6650 6549 4 980 3242 60 72 2 chr1 51778008 51778424 -145417008 - L1_Mus2 LINE L1 0 6566 6122 4 980 2011 143 150 6 chr1 51779303 51779669 -145415763 - MTC LTR MaLR 0 421 3 4 980 459 242 47 28 chr1 51780250 51780414 -145415018 + RMER20B LTR ERVK 1 161 -355 4 980 1142 191 24 0 chr1 51780758 51780967 -145414465 - B3 SINE B2 0 216 3 4 980 246 246 43 58 chr1 51781112 51781123 -145414309 - ID SINE ID -141 83 16 4 980 286 259 17 0 chr1 51781123 51781181 -145414251 - ID4_ SINE ID -9 74 16 4 980 264 137 0 0 chr1 51781269 51781320 -145414112 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 980 241 280 10 29 chr1 51781323 51781426 -145414006 + (CATA)n Simple_repeat Simple_repeat 2 102 0 4 980 466 198 6 44 chr1 51781432 51781612 -145413820 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 4 980 399 298 0 8 chr1 51781612 51781737 -145413695 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 980 351 250 0 33 chr1 51781739 51781921 -145413511 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 4 980 434 211 0 44 chr1 51781900 51782083 -145413349 + (CATA)n Simple_repeat Simple_repeat 4 178 0 4 980 204 239 18 18 chr1 51782093 51782204 -145413228 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 4 980 303 236 11 38 chr1 51782244 51782429 -145413003 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 980 232 265 30 12 chr1 51782485 51782653 -145412779 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 4 980 471 210 0 38 chr1 51782672 51782855 -145412577 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 4 980 230 198 41 10 chr1 51782877 51782974 -145412458 + (TATATG)n Simple_repeat Simple_repeat 5 104 0 4 980 470 256 0 12 chr1 51783026 51783196 -145412236 + (TATG)n Simple_repeat Simple_repeat 3 170 0 4 980 310 245 0 25 chr1 51783213 51783376 -145412056 + (TATG)n Simple_repeat Simple_repeat 4 162 0 4 980 509 195 18 12 chr1 51783392 51783558 -145411874 + (TATG)n Simple_repeat Simple_repeat 4 170 0 4 980 286 226 87 19 chr1 51783707 51783811 -145411621 + L1M5 LINE L1 5696 5806 -356 4 980 244 226 16 0 chr1 51783944 51784006 -145411426 - L1M2 LINE L1 -2709 3434 3372 4 980 1054 156 27 22 chr1 51784100 51784283 -145411149 - B2_Mm2 SINE B2 -8 187 4 4 980 742 186 0 0 chr1 51784316 51784445 -145410987 - B3 SINE B2 -86 130 2 4 980 249 252 51 25 chr1 51784448 51784566 -145410866 + Lx9 LINE L1 7518 7638 -6 4 980 208 185 56 0 chr1 51784577 51784631 -145410801 - L2 LINE L2 -772 2647 2591 4 980 301 314 123 41 chr1 51785148 51785417 -145410015 - L2 LINE L2 -826 2593 2303 4 980 234 274 14 0 chr1 51786292 51786365 -145409067 - L1MC4 LINE L1 -4602 1613 1540 4 980 212 260 0 0 chr1 51786393 51786443 -145408989 + ID4 SINE ID 1 50 -33 4 980 3315 41 5 8 chr1 51786586 51786983 -145408449 + MTA_Mm LTR MaLR 1 396 0 4 980 9204 43 3 3 chr1 51786985 51788083 -145407349 + MTA_Mm-int LTR MaLR 1 1098 0 4 980 3283 18 42 3 chr1 51788083 51788464 -145406968 + MTA_Mm LTR MaLR 1 396 0 4 980 347 122 20 20 chr1 51788584 51788659 -145406773 + ORR1A2 LTR MaLR 293 414 -7 4 980 258 29 0 0 chr1 51788662 51788696 -145406736 + ORR1A2-int LTR MaLR 1 34 -1475 4 980 185 154 0 49 chr1 51788699 51788740 -145406692 + MIR SINE MIR 95 133 -129 4 980 1374 93 39 5 chr1 51788741 51788947 -145406485 + ORR1A2 LTR MaLR 115 327 0 4 980 10635 134 62 25 chr1 51788947 51790840 -145404592 + ORR1A2-int LTR MaLR 1 1963 0 4 980 2312 97 22 0 chr1 51790840 51791101 -145404331 + ORR1A2 LTR MaLR 1 261 -66 4 980 234 0 0 0 chr1 51791101 51791127 -145404305 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 980 2312 97 22 0 chr1 51791127 51791185 -145404247 + ORR1A2 LTR MaLR 262 325 -2 4 980 226 238 0 0 chr1 51791187 51791229 -145404203 + polypyrimidine Low_complexity Low_complexity 2 43 0 4 980 2044 185 3 5 chr1 51791526 51791895 -145403537 + RMER1C Other Other 821 1188 -154 4 980 180 0 0 0 chr1 51791898 51791918 -145403514 + (TTG)n Simple_repeat Simple_repeat 1 20 0 4 980 310 211 52 52 chr1 51791918 51792033 -145403399 + RMER1C Other Other 1228 1342 0 4 980 22 0 0 0 chr1 51792134 51792156 -145403276 + AT_rich Low_complexity Low_complexity 1 22 0 4 980 905 221 122 48 chr1 51792184 51792332 -145403100 + RMER2 LTR ERV1 1 178 -389 4 980 360 0 0 0 chr1 51792332 51792372 -145403060 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 980 905 221 122 48 chr1 51792372 51792518 -145402914 + RMER2 LTR ERV1 179 316 -251 4 980 280 257 46 37 chr1 51792614 51792723 -145402709 + RMER2 LTR ERV1 458 567 0 4 980 337 259 206 21 chr1 51792758 51792991 -145402441 - B4A SINE B4 -16 276 1 4 980 284 302 12 0 chr1 51793162 51793248 -145402184 - PB1 SINE Alu -7 120 34 4 980 306 261 109 16 chr1 51793278 51793461 -145401971 + Charlie5 DNA MER1_type 2407 2606 -18 4 980 246 200 104 26 chr1 51794556 51794633 -145400799 + PB1D10 SINE Alu 28 110 -7 4 980 300 204 40 20 chr1 51794651 51794751 -145400681 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 4 980 1527 246 50 17 chr1 51794896 51795372 -145400060 + RMER5 LTR ERV1 33 524 -10 4 980 1506 77 0 5 chr1 51795461 51795656 -145399776 + B2_Mm2 SINE B2 2 195 0 4 980 303 256 81 0 chr1 51796034 51796120 -145399312 - PB1D10 SINE Alu 0 117 25 4 980 210 71 0 0 chr1 51797428 51797456 -145397976 + (TCC)n Simple_repeat Simple_repeat 3 30 0 4 980 180 0 0 0 chr1 51798601 51798621 -145396811 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 980 790 201 0 14 chr1 51798621 51798762 -145396670 - B1_Mur1 SINE Alu -10 139 1 4 980 246 308 13 0 chr1 51798764 51798842 -145396590 - ID_B1 SINE B4 -46 178 100 4 980 246 267 17 0 chr1 51798799 51798859 -145396573 - PB1D7 SINE Alu -59 61 1 5 980 1618 174 127 11 chr1 51799750 51800127 -145395305 - MTC LTR MaLR 0 421 1 5 980 2513 128 64 22 chr1 51800293 51800795 -145394637 - RLTR28 LTR ERVL -1 523 1 5 980 200 274 0 16 chr1 51800938 51801001 -145394431 + MIR3 SINE MIR 112 173 -35 5 980 303 259 13 14 chr1 51801135 51801232 -145394200 + PB1D7 SINE Alu 11 110 -10 5 980 448 261 73 22 chr1 51801471 51801608 -145393824 - B3A SINE B2 -16 182 39 5 980 667 214 27 7 chr1 51801622 51801768 -145393664 - B1F1 SINE Alu 0 149 1 5 980 32 0 0 0 chr1 51802584 51802616 -145392816 + AT_rich Low_complexity Low_complexity 1 32 0 5 980 414 257 187 50 chr1 51803261 51803560 -145391872 + L1M5 LINE L1 4887 5226 -920 5 980 396 59 0 0 chr1 51803913 51803964 -145391468 + (CACG)n Simple_repeat Simple_repeat 1 51 0 5 980 240 158 0 0 chr1 51804220 51804277 -145391155 + A-rich Low_complexity Low_complexity 1 57 0 5 980 358 247 144 0 chr1 51805520 51805617 -145389815 - PB1D9 SINE Alu -8 112 2 5 980 189 0 0 0 chr1 51807358 51807379 -145388053 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 980 237 281 0 0 chr1 51807628 51807685 -145387747 + L2b LINE L2 3316 3372 -3 5 980 186 43 0 0 chr1 51808333 51808356 -145387076 + (A)n Simple_repeat Simple_repeat 1 23 0 5 980 693 66 0 0 chr1 51808567 51808658 -145386774 + (TTTTC)n Simple_repeat Simple_repeat 2 92 0 5 980 1127 43 7 0 chr1 51808658 51808796 -145386636 - B1_Mus1 SINE Alu -9 139 1 5 980 738 306 65 25 chr1 51809071 51809316 -145386116 - B4 SINE B4 0 292 38 5 980 3108 68 13 0 chr1 51809340 51809735 -145385697 + MTB LTR MaLR 1 400 0 5 980 341 270 0 45 chr1 51809863 51809998 -145385434 - B1_Mur1 SINE Alu -2 147 1 5 980 192 274 91 36 chr1 51810143 51810253 -145385179 - MIR SINE MIR -27 235 120 5 980 1263 47 0 0 chr1 51810403 51810551 -145384881 - B1_Mus1 SINE Alu 0 148 1 5 980 743 188 15 0 chr1 51812903 51813036 -145382396 + RSINE1 SINE B4 2 136 -29 5 980 479 274 68 31 chr1 51814360 51814552 -145380880 - B4A SINE B4 -87 205 7 5 980 1058 77 28 0 chr1 51814892 51815035 -145380397 + B1_Mm SINE Alu 1 147 0 5 980 449 168 19 78 chr1 51817307 51817410 -145378022 - PB1D9 SINE Alu 0 120 24 5 980 475 191 98 18 chr1 51817725 51817837 -145377595 + B1F SINE Alu 27 147 -2 5 980 821 161 225 22 chr1 51817929 51818107 -145377325 - B3 SINE B2 0 216 3 5 980 427 280 0 0 chr1 51819931 51820031 -145375401 + Tigger5 DNA MER2_type 2 101 -2305 5 980 421 282 9 9 chr1 51820107 51820218 -145375214 + Tigger5 DNA MER2_type 2290 2400 -6 5 980 270 354 88 40 chr1 51821584 51821858 -145373574 + MER102c DNA MER1_type 8 316 -15 5 980 256 265 0 0 chr1 51824296 51824364 -145371068 + ID4 SINE ID 15 82 -1 5 980 651 65 0 0 chr1 51826000 51826093 -145369339 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 980 252 143 0 0 chr1 51826812 51826854 -145368578 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 980 507 319 115 12 chr1 51826890 51827134 -145368298 - Cheshire DNA MER1_type -2151 269 1 5 980 904 230 10 10 chr1 51828553 51828755 -145366677 + MTC LTR MaLR 200 401 -20 5 980 295 284 127 33 chr1 51829850 51830034 -145365398 + MIR SINE MIR 26 215 -47 5 980 183 80 0 0 chr1 51830805 51830830 -145364602 + (T)n Simple_repeat Simple_repeat 1 25 0 5 980 1010 79 65 0 chr1 51830830 51830969 -145364463 - B1_Mus1 SINE Alu 0 148 1 5 980 180 111 0 0 chr1 51831309 51831336 -145364096 + (CATAT)n Simple_repeat Simple_repeat 5 31 0 5 980 264 211 19 0 chr1 51831391 51831443 -145363989 - RSINE1 SINE B4 -29 136 84 5 980 288 0 0 0 chr1 51831704 51831736 -145363696 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 980 752 259 6 0 chr1 51831737 51831903 -145363529 - B3 SINE B2 -49 167 1 5 980 284 342 111 68 chr1 51833885 51834120 -145361312 + MLT1J LTR MaLR 111 355 -157 5 980 306 0 0 0 chr1 51834235 51834269 -145361163 + (CTA)n Simple_repeat Simple_repeat 1 34 0 5 980 273 272 76 19 chr1 51839790 51839895 -145355537 + PB1D9 SINE Alu 8 118 -2 5 980 705 106 0 0 chr1 51839928 51840032 -145355400 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 5 980 318 278 89 0 chr1 51840231 51840321 -145355111 + RSINE1 SINE B4 56 153 -12 5 980 29 47 0 0 chr1 51840606 51840649 -145354783 + AT_rich Low_complexity Low_complexity 1 43 0 5 980 266 264 127 0 chr1 51840877 51840987 -145354445 - L1M5 LINE L1 -292 5887 5764 5 980 199 238 0 0 chr1 51841053 51841095 -145354337 - MIR SINE MIR -5 257 216 5 980 215 209 0 0 chr1 51841094 51841137 -145354295 - L2b LINE L2 -22 3353 3311 5 980 921 144 0 28 chr1 51843555 51843698 -145351734 - B1_Mus1 SINE Alu -7 141 3 5 980 379 287 19 0 chr1 51846972 51847080 -145348352 + B1_Mur1 SINE Alu 5 114 -35 5 980 1214 105 55 6 chr1 51847236 51847418 -145348014 - B2_Mm2 SINE B2 -3 192 2 5 980 1426 240 30 94 chr1 51847533 51847938 -145347494 + MTE2a LTR MaLR 1 379 0 5 980 550 258 53 0 chr1 51848078 51848229 -145347203 - MER5B DNA MER1_type -8 170 12 5 980 243 235 39 0 chr1 51848534 51848585 -145346847 + MTE2b LTR MaLR 92 144 -235 5 980 216 354 10 59 chr1 51848880 51848982 -145346450 + PB1D9 SINE Alu 1 97 -23 5 980 258 227 73 14 chr1 51849755 51849834 -145345598 + MIRb SINE MIR 120 210 -58 5 980 709 147 9 0 chr1 51849873 51849989 -145345443 - B1_Mur3 SINE Alu -32 117 1 5 980 351 0 0 0 chr1 51850322 51850361 -145345071 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 980 27 49 0 0 chr1 51851291 51851332 -145344100 + AT_rich Low_complexity Low_complexity 1 41 0 5 980 31 0 0 0 chr1 51851926 51851957 -145343475 + AT_rich Low_complexity Low_complexity 1 31 0 5 980 311 223 240 21 chr1 51852875 51853067 -145342365 + L2 LINE L2 2606 2839 -580 5 980 236 167 21 0 chr1 51854893 51854941 -145340491 - L2a LINE L2 0 3426 3378 5 980 4222 45 2 4 chr1 51855527 51856043 -145339389 + L1Md_F2 LINE L1 6068 6582 0 5 980 225 0 0 0 chr1 51856063 51856088 -145339344 + (A)n Simple_repeat Simple_repeat 1 25 0 5 980 542 247 210 35 chr1 51856980 51857299 -145338133 + MTEa LTR MaLR 2 376 -3 5 980 399 289 73 13 chr1 51857542 51857693 -145337739 - RSINE1 SINE B4 -3 162 3 5 980 1293 20 0 0 chr1 51858789 51858936 -145336496 + B1_Mus2 SINE Alu 1 147 0 5 980 198 0 0 0 chr1 51858936 51858958 -145336474 + (A)n Simple_repeat Simple_repeat 1 22 0 5 980 311 307 132 70 chr1 51859933 51860206 -145335226 + B4A SINE B4 3 292 0 5 980 426 186 0 0 chr1 51860206 51860292 -145335140 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 980 420 20 0 0 chr1 51861884 51861933 -145333499 + (GGA)n Simple_repeat Simple_repeat 1 49 0 5 980 274 296 74 64 chr1 51862678 51862880 -145332552 + B4A SINE B4 43 246 -46 5 980 353 58 19 0 chr1 51862888 51862940 -145332492 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 980 459 0 0 0 chr1 51863883 51863934 -145331498 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 980 236 329 129 7 chr1 51864047 51864194 -145331238 - MIRm SINE MIR -10 266 102 5 980 745 161 0 13 chr1 51864550 51864701 -145330731 + GA-rich Low_complexity Low_complexity 3 151 0 5 980 572 323 78 0 chr1 51866264 51866521 -145328911 + B4A SINE B4 1 277 -15 5 980 598 267 21 53 chr1 51866816 51867006 -145328426 + B3A SINE B2 6 189 -9 5 980 23 33 0 0 chr1 51867010 51867040 -145328392 + AT_rich Low_complexity Low_complexity 1 30 0 5 980 916 141 15 0 chr1 51867633 51867768 -145327664 + B1_Mur4 SINE Alu 1 137 -13 5 980 267 31 0 0 chr1 51867769 51867801 -145327631 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 980 189 0 0 0 chr1 51867810 51867831 -145327601 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 980 281 239 113 0 chr1 51867846 51867917 -145327515 + ID4 SINE ID 2 80 -3 5 980 2555 95 0 55 chr1 51868073 51868453 -145326979 + L1_Mus2 LINE L1 6208 6566 0 5 980 5677 141 46 24 chr1 51868549 51869556 -145325876 + Lx4B LINE L1 6027 7055 -3 5 980 280 282 26 0 chr1 51869596 51869674 -145325758 + (CATA)n Simple_repeat Simple_repeat 2 81 0 5 980 1200 189 141 33 chr1 51870213 51870556 -145324876 + RMER17C LTR ERVK 1 384 -26 5 980 186 43 0 0 chr1 51870556 51870579 -145324853 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 980 1284 69 28 6 chr1 51870579 51870755 -145324677 - B2_Mm2 SINE B2 -15 180 1 5 980 1200 189 141 33 chr1 51870755 51870771 -145324661 + RMER17C LTR ERVK 385 399 -11 5 980 209 287 86 63 chr1 51871793 51871968 -145323464 - L2 LINE L2 -567 2852 2674 5 980 442 252 27 0 chr1 51872226 51872337 -145323095 + ORR1E LTR MaLR 8 121 -238 5 980 297 225 93 22 chr1 51872341 51872456 -145322976 + ORR1E LTR MaLR 245 379 0 5 980 1404 116 9 0 chr1 51873131 51873347 -145322085 - L1_Mur1 LINE L1 -1941 3945 3728 5 980 7093 99 20 9 chr1 51873347 51874360 -145321072 + Lx LINE L1 5631 6654 0 5 980 1019 119 14 0 chr1 51874702 51874845 -145320587 - B1_Mus1 SINE Alu -3 145 1 5 980 563 207 0 17 chr1 51874860 51874978 -145320454 + B1_Mus2 SINE Alu 10 125 -22 5 980 286 247 0 43 chr1 51876149 51876242 -145319190 + PB1D10 SINE Alu 24 112 -5 5 980 321 89 0 0 chr1 51876770 51876815 -145318617 + (A)n Simple_repeat Simple_repeat 1 45 0 5 980 188 34 0 33 chr1 51878894 51878924 -145316508 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 980 401 169 0 12 chr1 51879895 51879979 -145315453 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 980 535 300 80 12 chr1 51879984 51880146 -145315286 - B3 SINE B2 -17 199 27 6 980 250 317 88 16 chr1 51880405 51880530 -145314902 + MLT1B LTR MaLR 185 318 -72 6 980 1590 126 140 46 chr1 51882488 51882837 -145312595 + ORR1B1 LTR MaLR 5 386 -8 6 980 255 309 48 79 chr1 51883821 51883986 -145311446 + RSINE1 SINE B4 2 161 -4 6 980 988 135 15 123 chr1 51884737 51884940 -145310492 + B2_Mm2 SINE B2 1 181 -14 6 980 359 130 13 0 chr1 51884965 51885042 -145310390 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 6 980 432 0 0 0 chr1 51885472 51885520 -145309912 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 980 570 168 177 0 chr1 51885644 51885757 -145309675 + B1_Mur2 SINE Alu 10 142 -7 6 980 237 65 0 0 chr1 51885758 51885789 -145309643 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 6 980 482 265 73 7 chr1 51885981 51886118 -145309314 + RSINE1 SINE B4 2 147 -18 6 980 327 25 0 0 chr1 51886121 51886161 -145309271 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 980 21 0 0 0 chr1 51887986 51888007 -145307425 + AT_rich Low_complexity Low_complexity 1 21 0 6 980 486 0 0 0 chr1 51888114 51888168 -145307264 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 980 997 242 138 14 chr1 51889391 51889737 -145305695 + MTE2a LTR MaLR 24 412 -7 6 980 231 276 17 0 chr1 51890021 51890079 -145305353 + B1_Mus1 SINE Alu 2 60 -88 6 980 733 178 206 70 chr1 51890882 51891081 -145304351 + URR1A DNA MER1_type 1 226 0 6 980 24 0 0 0 chr1 51891826 51891850 -145303582 + AT_rich Low_complexity Low_complexity 1 24 0 6 980 210 71 0 0 chr1 51892092 51892120 -145303312 + (A)n Simple_repeat Simple_repeat 1 28 0 6 980 718 285 92 4 chr1 51893673 51893934 -145301498 - MER2 DNA MER2_type -37 308 25 6 980 21 0 0 0 chr1 51896114 51896135 -145299297 + AT_rich Low_complexity Low_complexity 1 21 0 6 980 479 250 166 18 chr1 51896250 51896413 -145299019 + Lx5 LINE L1 6177 6363 -687 6 980 1578 211 206 30 chr1 51896410 51896959 -145298473 + Lx6 LINE L1 6503 7405 -55 6 980 240 267 70 78 chr1 51897093 51897112 -145298320 + B1_Mus1 SINE Alu 5 143 -3 6 980 410 210 58 16 chr1 51897112 51897233 -145298199 + ID_B1 SINE B4 94 219 -5 6 980 225 0 0 0 chr1 51898000 51898025 -145297407 + (A)n Simple_repeat Simple_repeat 1 25 0 6 980 296 282 0 14 chr1 51898036 51898048 -145297384 + ID4 SINE ID 3 73 -10 6 980 297 217 0 0 chr1 51898048 51898108 -145297324 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 6 980 207 100 0 0 chr1 51898111 51898141 -145297291 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 980 36 0 0 0 chr1 51901582 51901618 -145293814 + AT_rich Low_complexity Low_complexity 1 36 0 6 980 263 301 38 51 chr1 51901746 51901865 -145293567 + PB1D10 SINE Alu 3 116 -33 6 980 434 217 0 9 chr1 51902839 51902955 -145292477 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 980 381 321 0 35 chr1 51903203 51903319 -145292113 + PB1 SINE Alu 3 114 -13 6 980 417 20 0 0 chr1 51903321 51903371 -145292061 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 6 980 216 0 0 0 chr1 51903700 51903724 -145291708 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 6 981 230 262 24 36 chr1 51905460 51905543 -145289889 + MLT1J2 LTR MaLR 45 126 -322 6 981 263 291 113 7 chr1 51905863 51906005 -145289427 + Charlie7a DNA MER1_type 12 168 -104 6 981 22 35 0 0 chr1 51907606 51907635 -145287797 + AT_rich Low_complexity Low_complexity 1 29 0 6 981 414 0 0 0 chr1 51907705 51907751 -145287681 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 981 2471 67 0 0 chr1 51907751 51908082 -145287350 - MTA_Mm LTR MaLR -3 393 63 6 981 540 306 96 54 chr1 51908077 51908357 -145287075 + MER2 DNA MER2_type 41 332 -13 6 981 222 379 52 13 chr1 51908598 51908753 -145286679 - L2a LINE L2 0 3426 3266 6 981 180 0 0 0 chr1 51909667 51909687 -145285745 + (A)n Simple_repeat Simple_repeat 1 20 0 6 981 522 264 47 0 chr1 51909697 51909826 -145285606 + RSINE1 SINE B4 5 139 -26 6 981 573 28 0 0 chr1 51909826 51909897 -145285535 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 981 615 348 106 73 chr1 51910349 51911103 -145284329 + MER21B LTR ERV1 25 803 -60 6 981 186 71 0 0 chr1 51911344 51911372 -145284060 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 981 265 238 265 10 chr1 51912652 51912754 -145282678 + RSINE1 SINE B4 10 137 -28 6 981 358 302 50 25 chr1 51913431 51913550 -145281882 + L2a LINE L2 3305 3426 0 6 981 2693 38 156 0 chr1 51914525 51914871 -145280561 - MTB LTR MaLR 0 400 1 6 981 342 0 0 0 chr1 51914932 51914970 -145280462 + (A)n Simple_repeat Simple_repeat 1 38 0 6 981 1159 200 5 0 chr1 51915072 51915282 -145280150 + B3 SINE B2 6 216 0 6 981 243 0 0 0 chr1 51915948 51915975 -145279457 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 981 879 94 23 0 chr1 51915976 51916104 -145279328 - B1_Mus1 SINE Alu -13 135 5 6 981 335 218 44 33 chr1 51916337 51916427 -145279005 - RSINE1 SINE B4 -19 146 56 6 981 218 264 74 42 chr1 51917664 51917759 -145277673 + MIR SINE MIR 147 244 -18 6 981 38 22 0 0 chr1 51918206 51918251 -145277181 + AT_rich Low_complexity Low_complexity 1 45 0 6 981 399 89 0 0 chr1 51918343 51918399 -145277033 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 981 228 299 72 72 chr1 51918541 51918707 -145276725 - MER20 DNA MER1_type -53 166 1 6 981 695 158 98 0 chr1 51919744 51919877 -145275555 - B1_Mus1 SINE Alu -1 147 2 6 981 277 274 96 0 chr1 51921187 51921260 -145274172 + RSINE1 SINE B4 2 81 -84 6 981 218 229 16 0 chr1 51921299 51921360 -145274072 + (CATA)n Simple_repeat Simple_repeat 3 64 0 6 981 187 231 106 15 chr1 51922261 51922327 -145273105 + L2b LINE L2 3302 3373 -2 6 981 263 274 97 45 chr1 51923228 51923362 -145272070 + MLT1H LTR MaLR 409 549 0 6 981 414 0 0 0 chr1 51923608 51923654 -145271778 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 981 2763 26 2 213 chr1 51924240 51924734 -145270698 - RLTR10 LTR ERVK 0 390 1 6 981 13471 27 2 1 chr1 51924736 51926615 -145268817 - RLTR10-int LTR ERVK -3 1984 1 6 981 3008 26 2 126 chr1 51926615 51927060 -145268372 - RLTR10 LTR ERVK 0 390 1 6 981 266 315 53 33 chr1 51927870 51928021 -145267411 - MIRb SINE MIR -26 242 89 6 981 314 250 0 26 chr1 51928249 51928327 -145267105 + C-rich Low_complexity Low_complexity 5 80 0 6 981 228 314 80 22 chr1 51928419 51928556 -145266876 - L1M3 LINE L1 -371 5812 5668 6 981 328 266 88 59 chr1 51928840 51928976 -145266456 - B1F1 SINE Alu 0 149 10 6 981 227 301 0 27 chr1 51930155 51930230 -145265202 + GA-rich Low_complexity Low_complexity 5 77 0 6 981 350 197 435 7 chr1 51930765 51930910 -145264522 + B3A SINE B2 1 207 -9 6 981 351 0 0 0 chr1 51930919 51930958 -145264474 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 981 211 182 0 0 chr1 51931141 51931174 -145264258 + G-rich Low_complexity Low_complexity 1 33 0 6 981 245 322 80 10 chr1 51931403 51931558 -145263874 + MIR SINE MIR 82 260 -8 6 981 202 274 71 12 chr1 51932238 51932323 -145263109 - MIR SINE MIR -106 156 67 6 981 225 0 0 0 chr1 51933477 51933502 -145261930 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 981 185 348 0 0 chr1 51933617 51933686 -145261746 - MIRb SINE MIR -80 188 120 6 981 293 47 23 0 chr1 51933924 51933967 -145261465 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 6 981 204 364 65 0 chr1 51934326 51934480 -145260952 + MIRb SINE MIR 54 217 -51 6 981 212 233 156 0 chr1 51934500 51934590 -145260842 - MIRc SINE MIR -163 105 2 6 981 22 0 0 0 chr1 51937167 51937189 -145258243 + GC_rich Low_complexity Low_complexity 1 22 0 6 981 333 47 0 0 chr1 51937443 51937486 -145257946 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 981 241 299 293 13 chr1 51938733 51938963 -145256469 + MLT1A0 LTR MaLR 70 363 -2 6 981 546 273 19 13 chr1 51940596 51940752 -145254680 + RSINE1 SINE B4 3 159 -6 6 981 473 270 68 62 chr1 51940788 51940950 -145254482 + RSINE1 SINE B4 3 165 0 6 981 754 197 0 20 chr1 51941066 51941216 -145254216 + B1_Mur1 SINE Alu 2 148 -1 6 981 181 30 29 57 chr1 51942077 51942112 -145253320 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 981 297 51 0 0 chr1 51942207 51942246 -145253186 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 981 218 105 26 0 chr1 51946965 51947003 -145248429 + (TGGGGG)n Simple_repeat Simple_repeat 1 39 0 6 981 525 243 25 69 chr1 51947220 51947379 -145248053 - RSINE1 SINE B4 -11 154 3 6 981 440 62 16 0 chr1 51947445 51947509 -145247923 + (GAAAA)n Simple_repeat Simple_repeat 1 65 0 6 981 351 225 54 16 chr1 51948285 51948393 -145247039 + MLT1A LTR MaLR 235 357 -33 6 981 580 275 38 16 chr1 51949608 51949793 -145245639 + RMER30 DNA MER1_type 14 202 0 6 981 713 276 142 9 chr1 51950118 51950436 -145244996 + MTEa LTR MaLR 20 379 0 6 981 189 107 0 0 chr1 51951473 51951501 -145243931 + (A)n Simple_repeat Simple_repeat 1 28 0 6 981 268 299 11 11 chr1 51953678 51953766 -145241666 - ORR1D2 LTR MaLR -4 366 279 6 981 232 295 25 13 chr1 51953848 51953927 -145241505 - ORR1D2 LTR MaLR -276 83 4 6 981 186 171 0 0 chr1 51954075 51954116 -145241316 + G-rich Low_complexity Low_complexity 1 41 0 6 981 246 195 0 83 chr1 51954277 51954361 -145241071 + C-rich Low_complexity Low_complexity 5 81 0 6 981 326 204 282 0 chr1 51954361 51954464 -145240968 - B1F1 SINE Alu -15 134 3 7 981 500 245 0 3 chr1 51955611 51956005 -145239427 + (TG)n Simple_repeat Simple_repeat 1 392 0 7 981 270 81 0 0 chr1 51956042 51956079 -145239353 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 981 294 29 0 0 chr1 51956079 51956113 -145239319 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 981 389 307 75 90 chr1 51957039 51957164 -145238268 + MLT1B LTR MaLR 21 198 -192 7 981 685 178 8 0 chr1 51957164 51957282 -145238150 + B3 SINE B2 5 123 -93 7 981 389 307 75 90 chr1 51957282 51957415 -145238017 + MLT1B LTR MaLR 199 390 0 7 981 270 0 0 0 chr1 51958119 51958149 -145237283 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7 981 325 338 25 6 chr1 51958180 51958338 -145237094 + GA-rich Low_complexity Low_complexity 1 161 0 7 981 247 227 207 9 chr1 51958350 51958461 -145236971 + L1M5 LINE L1 5706 5838 -286 7 981 462 294 36 22 chr1 51958745 51958884 -145236548 - ID_B1 SINE B4 -61 163 23 7 981 289 259 77 43 chr1 51958991 51959108 -145236324 - Lx7 LINE L1 -329 7367 7247 7 981 240 254 34 47 chr1 51961453 51961574 -145233858 - MIR SINE MIR -22 246 112 7 981 437 250 85 35 chr1 51962073 51962214 -145233218 - Tigger5 DNA MER2_type -2216 190 43 7 981 422 276 60 40 chr1 51962992 51963192 -145232240 + L1M5 LINE L1 4397 4600 -1546 7 981 339 224 106 0 chr1 51963567 51963652 -145231780 + PB1D9 SINE Alu 1 94 -26 7 981 496 70 23 0 chr1 51963667 51963753 -145231679 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 981 261 183 0 0 chr1 51963755 51963815 -145231617 + GA-rich Low_complexity Low_complexity 3 62 0 7 981 342 0 0 0 chr1 51965188 51965226 -145230206 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 981 785 168 41 27 chr1 51965372 51965519 -145229913 + B1_Mur4 SINE Alu 1 149 -1 7 981 255 270 26 51 chr1 51965575 51965653 -145229779 + PB1D10 SINE Alu 31 106 -11 7 981 191 36 36 0 chr1 51965922 51965950 -145229482 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 7 981 346 287 10 41 chr1 51966590 51966688 -145228744 + RSINE1 SINE B4 1 95 -70 7 981 1159 252 69 19 chr1 51966811 51967171 -145228261 + MTE2b LTR MaLR 2 379 0 7 981 378 94 0 0 chr1 51967994 51968058 -145227374 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 981 273 312 78 0 chr1 51968724 51968801 -145226631 + PB1D10 SINE Alu 1 83 -34 7 981 571 236 195 0 chr1 51968816 51968990 -145226442 + ID_B1 SINE B4 1 208 -16 7 981 424 217 157 8 chr1 51969212 51969333 -145226099 - B1_Mm SINE Alu -2 145 7 7 981 558 250 34 20 chr1 51969433 51969580 -145225852 + B1F SINE Alu 1 149 0 7 981 32 0 0 0 chr1 51969580 51969612 -145225820 + AT_rich Low_complexity Low_complexity 1 32 0 7 981 319 281 0 73 chr1 51969614 51969737 -145225695 + ID_B1 SINE B4 82 195 -29 7 981 446 210 89 10 chr1 51971298 51971399 -145224033 + PB1D9 SINE Alu 5 113 -7 7 981 246 32 0 0 chr1 51971421 51971452 -145223980 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 981 1143 30 0 0 chr1 51971459 51971590 -145223842 - B1_Mm SINE Alu -13 134 4 7 981 193 147 72 0 chr1 51973731 51973773 -145221659 - MIRb SINE MIR -57 211 161 7 981 370 287 120 0 chr1 51973864 51973972 -145221460 + MLT1F1 LTR MaLR 21 141 -428 7 981 618 14 0 0 chr1 51973982 51974053 -145221379 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 981 505 265 80 20 chr1 51974564 51974764 -145220668 - ID_B1 SINE B4 -8 216 5 7 981 371 309 29 7 chr1 51975508 51975648 -145219784 + RSINE1 SINE B4 2 144 -21 7 981 1802 183 103 26 chr1 51975883 51976270 -145219162 + MTD LTR MaLR 3 419 0 7 981 573 249 45 28 chr1 51976376 51976554 -145218878 + ID_B1 SINE B4 36 216 -8 7 981 2340 139 62 15 chr1 51976809 51977211 -145218221 - MTC LTR MaLR 0 421 1 7 981 3514 107 71 14 chr1 51977371 51977922 -145217510 - MT2B2 LTR ERVL 0 584 3 7 981 193 29 59 0 chr1 51978103 51978137 -145217295 + (TTG)n Simple_repeat Simple_repeat 2 37 0 7 981 1118 71 0 7 chr1 51978137 51978279 -145217153 - B1_Mus1 SINE Alu -7 141 1 7 981 27 49 0 0 chr1 51978990 51979031 -145216401 + AT_rich Low_complexity Low_complexity 1 41 0 7 981 1764 150 171 6 chr1 51979233 51979561 -145215871 - RLTR14 LTR ERV1 0 382 1 7 981 559 271 177 4 chr1 51981026 51981263 -145214169 - MER2 DNA MER2_type -15 330 53 7 981 354 23 0 0 chr1 51981744 51981787 -145213645 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 981 21 57 0 0 chr1 51981834 51981869 -145213563 + AT_rich Low_complexity Low_complexity 1 35 0 7 981 634 283 169 3 chr1 51982433 51982741 -145212691 + MLT1A LTR MaLR 5 363 -11 7 981 398 279 50 43 chr1 51982798 51982959 -145212473 - RSINE1 SINE B4 -2 163 2 7 981 194 263 52 13 chr1 51984250 51984327 -145211105 + L2c LINE L2 3034 3113 -274 7 981 293 98 0 47 chr1 51984365 51984429 -145211003 + (A)n Simple_repeat Simple_repeat 1 61 0 7 981 728 327 117 22 chr1 51984508 51984960 -145210472 + Lx8 LINE L1 6946 7467 -6 7 981 25 0 0 0 chr1 51984963 51984988 -145210444 + AT_rich Low_complexity Low_complexity 1 25 0 7 981 481 206 9 64 chr1 51985089 51985198 -145210234 + MTC LTR MaLR 1 103 -316 7 981 472 114 13 0 chr1 51985237 51985325 -145210107 + B1_Mus2 SINE Alu 61 149 -1 7 981 1506 149 75 51 chr1 51985341 51985674 -145209758 + MTC LTR MaLR 81 421 0 7 981 414 0 0 0 chr1 51986384 51986430 -145209002 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 981 314 80 20 0 chr1 51986947 51986997 -145208435 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 981 198 0 0 0 chr1 51987045 51987067 -145208365 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 981 525 99 0 0 chr1 51987073 51987154 -145208278 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 981 639 238 20 7 chr1 51987156 51987304 -145208128 - B3A SINE B2 -47 151 2 7 981 408 266 8 34 chr1 51987322 51987439 -145207993 - B1F1 SINE Alu -2 147 34 7 981 180 0 0 0 chr1 51988117 51988137 -145207295 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 981 476 249 80 0 chr1 51988730 51988867 -145206565 + B3 SINE B2 36 185 -13 7 981 295 320 10 20 chr1 51989582 51989684 -145205748 - MIRc SINE MIR -121 147 47 7 981 339 315 37 0 chr1 51989713 51989821 -145205611 + MER45A DNA Tip100 67 178 0 7 981 518 288 58 6 chr1 51989957 51990128 -145205304 + MLT1F LTR MaLR 100 279 -269 7 981 21 0 0 0 chr1 51992960 51992981 -145202451 + AT_rich Low_complexity Low_complexity 1 21 0 7 981 406 245 27 45 chr1 51994686 51994797 -145200635 - B1_Mur1 SINE Alu -13 136 28 7 981 273 197 0 0 chr1 51994943 51995009 -145200423 + A-rich Low_complexity Low_complexity 1 66 0 7 981 892 26 8 0 chr1 51995553 51995670 -145199762 + B1_Mm SINE Alu 30 147 0 7 981 723 44 0 0 chr1 51995692 51995783 -145199649 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 7 981 373 175 34 62 chr1 51996015 51996150 -145199282 + (TTATA)n Simple_repeat Simple_repeat 2 136 0 7 981 2393 114 9 0 chr1 51996150 51996474 -145198958 + ORR1A2 LTR MaLR 1 327 0 7 981 373 175 34 62 chr1 51996474 51996515 -145198917 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 7 981 1975 161 0 131 chr1 51996688 51997130 -145198302 + ORR1C2 LTR MaLR 1 384 0 7 981 231 224 0 0 chr1 51997341 51997390 -145198042 - MamGypLTR1c LTR Gypsy -9 794 746 7 981 771 120 16 16 chr1 51999526 51999653 -145195779 - B1_Mus1 SINE Alu 0 148 22 7 981 1372 88 11 0 chr1 52000706 52000887 -145194545 - B2_Mm1t SINE B2 -9 184 2 1 981 976 141 7 26 chr1 52000910 52001063 -145194369 + B1_Mur4 SINE Alu 1 150 0 2 981 24 32 0 0 chr1 52001268 52001299 -145194133 + AT_rich Low_complexity Low_complexity 1 31 0 3 981 306 315 27 0 chr1 52002197 52002308 -145193124 + MIRb SINE MIR 139 252 -16 4 981 214 298 60 0 chr1 52002981 52003065 -145192367 + PB1D9 SINE Alu 18 106 -14 5 981 411 291 9 18 chr1 52003538 52003650 -145191782 - PB1D7 SINE Alu -7 113 3 6 981 21 0 0 0 chr1 52004406 52004427 -145191005 + AT_rich Low_complexity Low_complexity 1 21 0 7 981 541 268 29 7 chr1 52006262 52006401 -145189031 + RSINE1 SINE B4 3 144 -21 8 981 351 0 0 0 chr1 52007050 52007089 -145188343 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 981 3552 195 93 41 chr1 52007947 52008776 -145186656 - Lx4A LINE L1 0 7058 6187 1 981 594 291 250 8 chr1 52009173 52009537 -145185895 + RMER1B Other Other 22 473 -593 1 981 989 196 53 5 chr1 52009530 52009720 -145185712 + RMER1B Other Other 712 910 -156 1 981 506 237 0 9 chr1 52009854 52009969 -145185463 + RMER1C Other Other 1202 1315 -27 1 981 1326 84 7 4 chr1 52009970 52010246 -145185186 + (GAAA)n Simple_repeat Simple_repeat 1 277 0 1 981 260 229 12 0 chr1 52010453 52010536 -145184896 + GA-rich Low_complexity Low_complexity 3 86 0 1 981 192 40 0 0 chr1 52010638 52010663 -145184769 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 981 187 48 0 106 chr1 52011167 52011214 -145184218 + A-rich Low_complexity Low_complexity 2 43 0 1 981 249 192 0 0 chr1 52011299 52011351 -145184081 + ID4_ SINE ID 2 53 -30 1 981 282 325 79 36 chr1 52011403 52011655 -145183777 + L1MD LINE L1 3928 4190 -1956 1 981 1087 124 71 0 chr1 52011714 52011883 -145183549 + B2_Mm2 SINE B2 1 181 -14 1 981 8193 45 2 1 chr1 52011883 52012912 -145182520 - L1Md_F2 LINE L1 -4 6578 5549 2 981 301 298 127 11 chr1 52013289 52013470 -145181962 + L1M5 LINE L1 5281 5482 -758 2 981 1083 22 0 21 chr1 52013506 52013648 -145181784 - B1_Mm SINE Alu 0 147 9 2 981 483 231 0 19 chr1 52013768 52013874 -145181558 + PB1D7 SINE Alu 1 104 -16 2 981 1138 84 0 0 chr1 52014178 52014320 -145181112 - B1_Mus1 SINE Alu -5 143 2 2 981 560 274 38 0 chr1 52014819 52014976 -145180456 + RSINE1 SINE B4 3 165 0 2 981 306 289 11 0 chr1 52014976 52015066 -145180366 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 981 22 70 0 0 chr1 52015066 52015109 -145180323 + AT_rich Low_complexity Low_complexity 1 43 0 2 981 1015 93 10 3 chr1 52015120 52015280 -145180152 - L1Md_F2 LINE L1 -1076 5933 5770 2 981 553 242 274 0 chr1 52015280 52015499 -145179933 + MTE2b LTR MaLR 56 334 -45 2 981 3002 258 66 21 chr1 52015610 52016399 -145179033 + Lx9 LINE L1 6382 7205 -439 3 981 1223 29 0 0 chr1 52016657 52016796 -145178636 + B1_Mm SINE Alu 2 140 -7 3 981 222 37 0 0 chr1 52016799 52016826 -145178606 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 981 1468 198 7 0 chr1 52016922 52017203 -145178229 + MTD LTR MaLR 1 283 -136 3 981 1626 115 11 8 chr1 52017203 52017465 -145177967 - RLTR9A2 LTR ERVK 0 383 121 3 981 478 139 178 0 chr1 52017465 52017566 -145177866 + MTD LTR MaLR 293 411 -8 3 981 631 194 48 0 chr1 52018108 52018232 -145177200 + B3 SINE B2 1 130 -86 3 981 659 209 121 40 chr1 52018257 52018431 -145177001 + B3 SINE B2 29 216 0 3 981 261 0 0 0 chr1 52018525 52018554 -145176878 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 981 432 0 0 0 chr1 52018554 52018601 -145176831 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 981 322 350 0 37 chr1 52018963 52019126 -145176306 + L3b LINE CR1 49 205 -277 3 981 1179 54 7 0 chr1 52019283 52019430 -145176002 + B1_Mus1 SINE Alu 1 148 0 4 981 240 111 0 0 chr1 52019430 52019475 -145175957 + (A)n Simple_repeat Simple_repeat 1 45 0 4 981 447 301 73 12 chr1 52020081 52020246 -145175186 - MIRb SINE MIR -72 196 22 4 981 3827 255 63 30 chr1 52020687 52020845 -145174587 - Lx8 LINE L1 0 7473 7330 4 981 231 36 0 0 chr1 52020845 52020873 -145174559 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 4 981 3827 255 63 30 chr1 52020873 52021824 -145173608 - Lx8 LINE L1 -144 7329 6327 4 981 1269 270 70 12 chr1 52021865 52022210 -145173222 + MTE2b LTR MaLR 1 365 -14 4 981 218 305 74 49 chr1 52022862 52023024 -145172408 + MER5A DNA MER1_type 1 166 -23 4 981 238 269 77 0 chr1 52023082 52023160 -145172272 + MER5B DNA MER1_type 21 104 -74 4 981 638 309 7 55 chr1 52023188 52023459 -145171973 + MLT1A LTR MaLR 115 372 -2 4 981 29 47 0 0 chr1 52024578 52024621 -145170811 + AT_rich Low_complexity Low_complexity 1 43 0 4 981 363 241 0 12 chr1 52025099 52025183 -145170249 + B4 SINE B4 1 83 -209 5 981 780 11 0 0 chr1 52025808 52025897 -145169535 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 5 981 324 0 0 0 chr1 52027058 52027094 -145168338 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 981 534 256 53 18 chr1 52027656 52027827 -145167605 + L1MD2 LINE L1 6151 6327 -32 5 981 236 204 20 0 chr1 52027841 52027890 -145167542 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 981 812 281 22 9 chr1 52028195 52028422 -145167010 + B4A SINE B4 1 230 -62 5 981 633 270 0 26 chr1 52028422 52028578 -145166854 + RSINE1 SINE B4 2 153 -12 5 981 271 354 114 45 chr1 52028578 52028868 -145166564 - RMER13A LTR ERVK 0 860 551 5 981 1212 234 93 46 chr1 52028885 52029324 -145166108 - RMER13A LTR ERVK -399 461 2 5 981 239 220 0 63 chr1 52029368 52029431 -145166001 + B4A SINE B4 216 274 -18 5 981 922 194 68 5 chr1 52029460 52029652 -145165780 - RMER1C Other Other -196 1146 943 5 981 514 237 16 66 chr1 52029734 52029768 -145165664 + ID_B1 SINE B4 63 96 -128 5 981 3132 55 36 0 chr1 52029768 52030152 -145165280 - MTB LTR MaLR 0 400 3 6 981 514 237 16 66 chr1 52030152 52030239 -145165193 + ID_B1 SINE B4 97 178 -46 5 981 5496 70 16 20 chr1 52030388 52031145 -145164287 + Lx3_Mus LINE L1 6256 7009 0 6 981 234 0 0 0 chr1 52031733 52031759 -145163673 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 981 545 306 0 20 chr1 52031831 52031981 -145163451 + RSINE1 SINE B4 2 148 -17 6 981 316 346 108 82 chr1 52033167 52033434 -145161998 + LTR16D LTR ERVL 300 582 -69 6 981 2478 149 132 20 chr1 52033434 52033941 -145161491 - RLTR12A LTR ERVK -4 564 1 6 981 316 346 108 82 chr1 52033941 52034016 -145161416 + LTR16D LTR ERVL 583 651 0 6 981 437 99 55 39 chr1 52034622 52034684 -145160748 - URR1B DNA MER1_type 0 225 129 6 122 6114 103 56 4 chr1 52034684 52035595 -145159837 + RMER17B LTR ERVK 1 958 0 6 982 437 142 244 30 chr1 52035595 52035690 -145159742 - URR1B DNA MER1_type -97 128 3 6 982 314 280 64 13 chr1 52036789 52036923 -145158509 - MLT2B4 LTR ERVL -265 149 17 6 982 409 326 54 27 chr1 52037079 52037227 -145158205 + RSINE1 SINE B4 4 155 -10 6 982 227 161 0 18 chr1 52037227 52037284 -145158148 + G-rich Low_complexity Low_complexity 6 61 0 7 982 291 327 48 65 chr1 52037381 52037610 -145157822 + ERVL-B4-int LTR ERVL 4110 4334 -1380 7 982 1785 245 98 50 chr1 52037725 52038369 -145157063 - RMER19A LTR ERVK -3 734 1 7 982 3273 69 0 0 chr1 52038400 52038818 -145156614 + L1Md_T LINE L1 6165 6582 0 7 982 818 121 0 51 chr1 52038820 52038977 -145156455 - MurERV4_19-int LTR ERVK -17 5763 5615 7 982 480 62 24 12 chr1 52039082 52039164 -145156268 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 7 982 1056 261 15 123 chr1 52039178 52039567 -145155865 - MTE2a LTR MaLR -14 365 19 7 982 332 191 12 0 chr1 52039751 52039835 -145155597 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 982 1668 203 137 23 chr1 52039902 52040376 -145155056 - RLTR11A LTR ERVK 0 528 1 7 982 1712 113 92 10 chr1 52040480 52040775 -145154657 + ORR1A2 LTR MaLR 1 319 -8 7 982 197 93 18 53 chr1 52040780 52040837 -145154595 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 982 1899 169 80 30 chr1 52041326 52041752 -145153680 - Lx9 LINE L1 -1 7643 7197 8 982 228 35 0 0 chr1 52042281 52042310 -145153122 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 982 245 253 0 11 chr1 52042928 52043016 -145152416 + GA-rich Low_complexity Low_complexity 3 89 0 8 982 372 292 47 34 chr1 52043132 52043281 -145152151 - MLT2D LTR ERVL -215 199 49 8 982 754 220 63 5 chr1 52044874 52045069 -145150363 - MTD LTR MaLR -14 405 207 8 982 877 80 0 0 chr1 52045069 52045194 -145150238 + MT2C_Mm LTR ERVL 1 125 -350 8 982 6992 73 2 6 chr1 52045194 52046077 -145149355 + MERVL-int LTR ERVL 2200 3079 -2406 8 982 635 85 0 0 chr1 52046077 52046171 -145149261 + MT2C_Mm LTR ERVL 380 473 -2 8 982 818 223 54 5 chr1 52046171 52046374 -145149058 - MTD LTR MaLR -206 213 1 8 982 819 251 98 41 chr1 52046380 52046400 -145149032 - B4A SINE B4 -10 282 271 8 982 180 0 0 0 chr1 52046400 52046420 -145149012 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 982 819 251 98 41 chr1 52046420 52046665 -145148767 - B4A SINE B4 -22 270 2 8 982 21 0 0 0 chr1 52046697 52046718 -145148714 + AT_rich Low_complexity Low_complexity 1 21 0 9 982 1126 76 14 0 chr1 52047019 52047164 -145148268 + B1_Mm SINE Alu 1 147 0 9 982 24 0 0 0 chr1 52047164 52047188 -145148244 + AT_rich Low_complexity Low_complexity 1 24 0 9 982 357 82 0 0 chr1 52048391 52048440 -145146992 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 982 24 0 0 0 chr1 52048459 52048483 -145146949 + AT_rich Low_complexity Low_complexity 1 24 0 9 982 271 213 0 0 chr1 52048616 52048663 -145146769 + RSINE1 SINE B4 76 122 -43 9 982 423 0 0 0 chr1 52049764 52049811 -145145621 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 982 290 26 0 25 chr1 52049811 52049850 -145145582 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 982 322 273 98 8 chr1 52050373 52050495 -145144937 + MIRb SINE MIR 43 175 -93 9 982 1198 49 7 0 chr1 52051428 52051572 -145143860 - B1_Mm SINE Alu 0 147 3 9 982 213 245 0 0 chr1 52052408 52052457 -145142975 + B1_Mm SINE Alu 1 49 -98 1 982 705 251 15 34 chr1 52052413 52052619 -145142813 + B4A SINE B4 91 292 0 1 982 878 171 14 0 chr1 52052679 52052819 -145142613 + B1_Mus1 SINE Alu 1 142 -6 1 982 239 230 89 38 chr1 52052821 52052979 -145142453 - RLTR21 LTR ERVK -334 1238 1073 1 982 1425 73 0 50 chr1 52054948 52055149 -145140283 - B2_Mm2 SINE B2 -3 192 2 1 982 411 279 54 0 chr1 52057285 52057414 -145138018 - ID_B1 SINE B4 -2 222 87 1 982 741 169 14 34 chr1 52057647 52057794 -145137638 - B1_Mur2 SINE Alu 0 149 6 1 982 233 227 0 0 chr1 52057893 52057937 -145137495 + CT-rich Low_complexity Low_complexity 1 44 0 1 982 185 0 40 0 chr1 52057938 52057963 -145137469 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 982 832 184 14 0 chr1 52057978 52058125 -145137307 - B1_Mur4 SINE Alu -1 149 1 1 982 431 250 65 0 chr1 52058125 52058217 -145137215 - RSINE1 SINE B4 -66 99 2 1 982 1452 28 0 0 chr1 52058333 52058510 -145136922 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 1 982 742 229 110 1 chr1 52058557 52058777 -145136655 - ORR1D1 LTR MaLR -125 253 6 1 982 833 291 110 7 chr1 52058794 52059323 -145136109 + L1MC LINE L1 3925 4525 -1621 1 982 460 304 25 6 chr1 52059373 52059532 -145135900 - B4 SINE B4 -6 286 125 1 982 214 125 20 20 chr1 52059778 52059827 -145135605 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 982 253 279 92 135 chr1 52059872 52060154 -145135278 - B4 SINE B4 -18 274 5 1 982 1150 74 6 0 chr1 52060436 52060599 -145134833 - B2_Mm1t SINE B2 -29 164 1 1 982 791 138 91 13 chr1 52060599 52060753 -145134679 + MTD LTR MaLR 244 409 -10 1 982 261 0 0 0 chr1 52060753 52060782 -145134650 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 982 1220 48 0 0 chr1 52060782 52060927 -145134505 - B1_Mus1 SINE Alu -2 146 2 1 982 430 300 112 24 chr1 52062282 52062605 -145132827 + Charlie1a DNA MER1_type 17 465 -990 1 982 1069 275 85 68 chr1 52062632 52062837 -145132595 + Charlie1a DNA MER1_type 653 882 -573 1 982 294 221 29 0 chr1 52062837 52062905 -145132527 + ID4_ SINE ID 2 71 -12 1 982 1069 275 85 68 chr1 52062905 52062963 -145132469 + Charlie1a DNA MER1_type 883 919 -536 1 982 591 53 0 0 chr1 52062963 52063038 -145132394 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 982 351 65 0 0 chr1 52063038 52063083 -145132349 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 982 1069 275 85 68 chr1 52063083 52063348 -145132084 + Charlie1a DNA MER1_type 920 1191 -264 1 982 536 149 206 0 chr1 52063362 52063469 -145131963 + ID_B1 SINE B4 92 220 -4 1 982 334 262 169 11 chr1 52063473 52063662 -145131770 + Charlie1a DNA MER1_type 1196 1414 -41 1 982 34 65 0 0 chr1 52063924 52063986 -145131446 + AT_rich Low_complexity Low_complexity 1 62 0 1 982 341 311 160 13 chr1 52064047 52064285 -145131147 + B4 SINE B4 1 273 -19 1 982 180 349 75 0 chr1 52064936 52065042 -145130390 + MIR3 SINE MIR 81 194 -14 1 982 189 121 0 0 chr1 52066401 52066434 -145128998 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 982 348 173 0 0 chr1 52066494 52066546 -145128886 - Lx8 LINE L1 -263 7210 7159 1 982 1168 62 0 0 chr1 52067170 52067316 -145128116 + B1_Mus2 SINE Alu 2 147 0 1 982 1385 45 0 6 chr1 52067972 52068150 -145127282 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 982 444 37 0 0 chr1 52068867 52068921 -145126511 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 982 1698 170 130 32 chr1 52069034 52069215 -145126217 - ORR1C2 LTR MaLR 0 384 191 1 982 255 61 0 0 chr1 52069215 52069248 -145126184 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 982 1698 170 130 32 chr1 52069248 52069413 -145126019 - ORR1C2 LTR MaLR -194 190 5 1 982 733 301 160 49 chr1 52069809 52070497 -145124935 - L1MB4 LINE L1 -41 6139 5376 1 982 252 214 0 0 chr1 52070981 52071037 -145124395 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 982 610 305 51 75 chr1 52071185 52071600 -145123832 - L1MC2 LINE L1 -151 6193 5789 1 982 417 284 41 17 chr1 52071755 52071927 -145123505 - HAL1b LINE L1 -11 1998 1823 1 982 297 0 0 0 chr1 52071977 52072010 -145123422 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 982 8353 46 1 6 chr1 52072111 52073297 -145122135 - L1Md_F2 LINE L1 0 6582 5403 1 982 729 188 0 21 chr1 52073297 52073438 -145121994 - B1_Mus1 SINE Alu 0 148 11 1 982 224 321 70 18 chr1 52073462 52073576 -145121856 + L2a LINE L2 3287 3406 -20 1 982 1623 43 0 0 chr1 52073589 52073774 -145121658 + B2_Mm1a SINE B2 2 186 -7 1 982 291 283 74 41 chr1 52074044 52074287 -145121145 - HAL1b LINE L1 -556 1453 1203 1 982 23 0 0 0 chr1 52074298 52074321 -145121111 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 379 333 132 0 chr1 52074321 52074465 -145120967 - RSINE1 SINE B4 0 165 3 1 982 383 308 49 70 chr1 52075222 52075466 -145119966 - L1M5 LINE L1 -418 5822 5584 1 982 739 224 115 40 chr1 52075587 52075787 -145119645 - B3 SINE B2 -1 215 1 1 982 1246 48 0 0 chr1 52076172 52076319 -145119113 + B1_Mm SINE Alu 1 147 0 1 982 194 0 39 0 chr1 52077042 52077068 -145118364 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 982 756 284 48 51 chr1 52077270 52077563 -145117869 - B4A SINE B4 0 292 1 1 982 875 166 12 31 chr1 52077694 52077856 -145117576 + B2_Mm2 SINE B2 1 159 -36 1 982 310 21 43 0 chr1 52077856 52077903 -145117529 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1 982 1119 260 33 20 chr1 52077938 52078244 -145117188 + MTEb LTR MaLR 68 377 -2 1 982 913 296 113 6 chr1 52079871 52080234 -145115198 - Lx8 LINE L1 -4 7469 7068 1 982 1180 157 26 75 chr1 52080569 52080796 -145114636 - B3 SINE B2 0 216 1 1 982 403 264 28 19 chr1 52080955 52081063 -145114369 - PB1D9 SINE Alu -6 114 6 1 982 231 240 0 0 chr1 52081139 52081189 -145114243 - ORR1B2 LTR MaLR 0 378 329 1 982 3896 212 56 24 chr1 52081194 52082513 -145112919 - RMER1A Other Other 0 1066 1 1 982 1250 41 0 0 chr1 52082513 52082660 -145112772 + B1_Mus2 SINE Alu 1 147 0 1 982 927 245 178 158 chr1 52082660 52082861 -145112571 - RMER1B Other Other -787 279 4 1 982 1597 159 39 60 chr1 52082929 52083264 -145112168 - ORR1B2 LTR MaLR -39 328 1 1 982 478 294 70 27 chr1 52083378 52083563 -145111869 - B3A SINE B2 -5 193 1 1 982 26 50 0 0 chr1 52084020 52084060 -145111372 + AT_rich Low_complexity Low_complexity 1 40 0 1 982 397 304 81 10 chr1 52085171 52085380 -145110052 - L1M5 LINE L1 -465 5659 5436 1 982 267 31 0 0 chr1 52086005 52086037 -145109395 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 982 456 279 89 30 chr1 52086195 52086373 -145109059 + B3A SINE B2 1 182 -34 1 982 396 0 0 0 chr1 52086399 52086443 -145108989 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 982 191 208 18 36 chr1 52086537 52086592 -145108840 + MER5B DNA MER1_type 125 178 0 1 982 252 0 0 0 chr1 52087376 52087404 -145108028 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 982 358 313 53 0 chr1 52087534 52087665 -145107767 - Lx8 LINE L1 -202 7271 7134 1 982 491 284 7 13 chr1 52087703 52087853 -145107579 - B1F SINE Alu 0 149 1 1 982 2547 169 134 82 chr1 52087955 52088611 -145106821 - RMER6C LTR ERVK 0 690 1 1 982 312 282 0 0 chr1 52088845 52088916 -145106516 + ID4_ SINE ID 10 80 -3 1 982 752 229 83 0 chr1 52090504 52090696 -145104736 + B3 SINE B2 3 210 -6 1 982 234 0 0 0 chr1 52092133 52092159 -145103273 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 982 258 322 31 1 chr1 52093831 52093953 -145101479 - MIRb SINE MIR -79 189 58 1 982 1684 31 0 0 chr1 52094360 52094551 -145100881 - B2_Mm1a SINE B2 -1 192 2 1 982 692 254 25 30 chr1 52094793 52094992 -145100440 - B3A SINE B2 0 198 1 1 982 307 287 32 0 chr1 52095042 52095136 -145100296 - L1ME1 LINE L1 -314 5865 5769 1 982 265 312 13 0 chr1 52095369 52095446 -145099986 + ID4_ SINE ID 2 79 -4 1 982 232 337 22 0 chr1 52095446 52095458 -145099974 + ID_B1 SINE B4 2 92 -132 1 982 202 292 0 0 chr1 52095784 52095832 -145099600 + MIRc SINE MIR 107 154 -114 1 982 709 199 72 70 chr1 52097916 52098221 -145097211 - Lx4B LINE L1 -9 7049 6695 1 982 210 172 0 49 chr1 52098270 52098331 -145097101 + T-rich Low_complexity Low_complexity 3 60 0 1 982 560 243 0 9 chr1 52098401 52098755 -145096677 + (TG)n Simple_repeat Simple_repeat 1 350 0 1 982 770 235 20 20 chr1 52098971 52099171 -145096261 + ID_B1 SINE B4 4 203 -21 1 982 208 283 60 93 chr1 52099479 52099662 -145095770 + MIR SINE MIR 77 253 -9 1 982 592 235 17 56 chr1 52101122 52101325 -145094107 - B3A SINE B2 -1 215 27 1 982 4929 62 29 0 chr1 52101339 52101970 -145093462 - Lx3_Mus LINE L1 -8 7001 6353 1 982 248 319 190 5 chr1 52102113 52102318 -145093114 - L2 LINE L2 -532 2887 2645 1 982 267 189 0 0 chr1 52102816 52102869 -145092563 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 982 491 319 14 14 chr1 52102896 52103036 -145092396 - RSINE1 SINE B4 -23 142 3 1 982 684 204 0 0 chr1 52103282 52103608 -145091824 + GA-rich Low_complexity Low_complexity 1 326 0 1 982 224 85 0 113 chr1 52103612 52103665 -145091767 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 1 982 503 155 0 44 chr1 52103669 52103851 -145091581 + GA-rich Low_complexity Low_complexity 3 176 0 1 982 201 298 30 30 chr1 52103859 52103994 -145091438 - SUBTEL_sa Satellite Satellite -37 137 3 1 982 397 198 0 1 chr1 52104003 52104092 -145091340 + B1_Mur1 SINE Alu 42 130 -20 1 982 1019 308 99 58 chr1 52104833 52105218 -145090214 - Lx9 LINE L1 -15 7629 7204 1 982 2902 157 35 27 chr1 52105218 52105735 -145089697 - Lx5 LINE L1 -2 7048 6528 1 982 1019 308 99 58 chr1 52105735 52105975 -145089457 - Lx9 LINE L1 -441 7203 6979 1 982 619 181 0 0 chr1 52106667 52106783 -145088649 + ORR1D1 LTR MaLR 1 116 -258 1 982 3061 80 7 38 chr1 52108723 52109176 -145086256 + L1_Mus4 LINE L1 6196 6634 -2 2 982 24 67 0 0 chr1 52110345 52110390 -145085042 + AT_rich Low_complexity Low_complexity 1 45 0 2 982 695 250 19 19 chr1 52110392 52110547 -145084885 - RSINE1 SINE B4 -9 156 2 2 982 333 264 47 39 chr1 52111060 52111163 -145084269 - PB1D10 SINE Alu 0 117 15 2 982 216 0 0 0 chr1 52111183 52111207 -145084225 + (T)n Simple_repeat Simple_repeat 1 24 0 2 982 21 82 0 0 chr1 52111898 52111947 -145083485 + AT_rich Low_complexity Low_complexity 1 49 0 2 982 300 202 96 53 chr1 52112503 52112597 -145082835 - LTR40b LTR ERVL -207 255 158 2 982 199 143 0 58 chr1 52113358 52113410 -145082022 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2 982 186 318 200 38 chr1 52113947 52114107 -145081325 - MIRc SINE MIR -24 244 59 2 982 846 279 12 28 chr1 52114244 52114491 -145080941 - MTEa LTR MaLR -129 250 8 2 982 213 39 0 0 chr1 52114595 52114621 -145080811 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 982 617 201 31 23 chr1 52114699 52114847 -145080585 + B1_Mur2 SINE Alu 1 149 0 2 982 520 248 206 39 chr1 52115181 52115491 -145079941 - L1MC1 LINE L1 -26 6318 5957 2 982 648 269 39 127 chr1 52115533 52115793 -145079639 - B4A SINE B4 0 292 56 2 982 1142 263 48 12 chr1 52115826 52116241 -145079191 - L1MC1 LINE L1 -378 5955 5526 2 982 838 291 127 0 chr1 52116253 52116593 -145078839 + Kanga1 DNA Tc2 57 439 -1306 2 982 413 340 60 58 chr1 52116607 52116951 -145078481 + Kanga1 DNA Tc2 598 942 -803 2 982 1104 201 5 28 chr1 52116951 52117166 -145078266 + B3 SINE B2 2 211 -5 2 982 413 340 60 58 chr1 52117166 52117186 -145078246 + Kanga1 DNA Tc2 943 962 -783 2 982 561 306 92 0 chr1 52117227 52117433 -145077999 + Kanga1 DNA Tc2 1092 1316 -429 2 982 547 268 146 23 chr1 52117450 52117710 -145077722 + Kanga1 DNA Tc2 1366 1657 -88 2 982 297 320 68 15 chr1 52117812 52118148 -145077284 + L1M5 LINE L1 2511 2864 -3282 2 982 365 299 97 62 chr1 52118220 52118477 -145076955 + L1M5 LINE L1 4220 4485 -1661 2 982 626 152 5 33 chr1 52118576 52118760 -145076672 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 982 263 190 17 0 chr1 52118760 52118818 -145076614 + GA-rich Low_complexity Low_complexity 1 59 0 2 982 352 319 80 51 chr1 52119276 52119451 -145075981 + L1M5 LINE L1 5035 5214 -932 2 982 6936 26 1 4 chr1 52120184 52120994 -145074438 + L1Md_F2 LINE L1 5775 6582 0 2 982 574 233 8 15 chr1 52122511 52122642 -145072790 - ID_B1 SINE B4 -13 211 82 2 982 25 31 0 0 chr1 52123106 52123138 -145072294 + AT_rich Low_complexity Low_complexity 1 32 0 2 982 250 242 15 0 chr1 52123314 52123380 -145072052 + CT-rich Low_complexity Low_complexity 1 67 0 2 982 21 0 0 0 chr1 52123514 52123535 -145071897 + AT_rich Low_complexity Low_complexity 1 21 0 2 982 623 269 66 44 chr1 52124048 52124206 -145071226 + B3A SINE B2 1 164 -34 2 982 405 81 0 0 chr1 52124206 52124268 -145071164 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 982 445 269 66 44 chr1 52124268 52124292 -145071140 + B2_Mm2 SINE B2 162 186 -9 2 982 439 301 62 17 chr1 52126631 52126807 -145068625 + LTR16A1 LTR ERVL 164 347 -109 2 982 22 35 0 0 chr1 52127126 52127155 -145068277 + AT_rich Low_complexity Low_complexity 1 29 0 2 982 787 153 7 21 chr1 52127563 52127703 -145067729 + B1_Mur1 SINE Alu 12 149 0 2 982 26 0 0 0 chr1 52128174 52128200 -145067232 + AT_rich Low_complexity Low_complexity 1 26 0 2 982 641 241 28 14 chr1 52128415 52128558 -145066874 + B3A SINE B2 7 151 -47 2 982 257 204 0 0 chr1 52129096 52129145 -145066287 + ID_B1 SINE B4 83 131 -93 2 982 36 70 0 0 chr1 52129441 52129512 -145065920 + AT_rich Low_complexity Low_complexity 1 71 0 2 982 1749 180 70 8 chr1 52129786 52130145 -145065287 - ORR1C2 LTR MaLR 0 384 4 2 982 457 239 25 42 chr1 52130667 52130785 -145064647 + ID_B1 SINE B4 80 195 -29 2 982 180 0 0 0 chr1 52130950 52130970 -145064462 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 982 1313 178 59 15 chr1 52130995 52131268 -145064164 + RLTR16 LTR ERVK 221 505 0 2 982 1135 82 0 0 chr1 52132108 52132254 -145063178 - B1_Mus1 SINE Alu -2 146 1 2 982 441 116 0 0 chr1 52132602 52132671 -145062761 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 982 825 239 29 14 chr1 52132883 52133091 -145062341 + B3 SINE B2 1 211 -5 2 982 794 205 80 15 chr1 52133890 52134152 -145061280 + L1MA8 LINE L1 6008 6286 -5 2 982 234 254 34 0 chr1 52134187 52134246 -145061186 + PB1D7 SINE Alu 52 112 -8 2 982 347 185 0 0 chr1 52135937 52135991 -145059441 + B1_Mus1 SINE Alu 1 54 -94 2 982 419 158 137 0 chr1 52136049 52136144 -145059288 + B1_Mus2 SINE Alu 40 147 0 2 982 452 117 0 13 chr1 52136167 52136221 -145059211 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 2 982 840 111 0 0 chr1 52136221 52136347 -145059085 + (GAAA)n Simple_repeat Simple_repeat 1 126 0 2 982 452 117 0 13 chr1 52136347 52136370 -145059062 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 2 982 779 104 36 15 chr1 52138025 52138162 -145057270 - URR1A DNA MER1_type -4 222 83 2 982 243 0 0 0 chr1 52139239 52139266 -145056166 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2 982 24 32 0 0 chr1 52139274 52139305 -145056127 + AT_rich Low_complexity Low_complexity 1 31 0 2 982 204 40 0 0 chr1 52139742 52139767 -145055665 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 982 342 0 0 0 chr1 52140386 52140424 -145055008 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 982 234 0 0 0 chr1 52140424 52140449 -145054983 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 982 296 24 24 0 chr1 52140449 52140489 -145054943 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 982 459 0 0 0 chr1 52140661 52140712 -145054720 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 982 622 168 84 0 chr1 52141326 52141457 -145053975 + B1_Mur4 SINE Alu 1 142 -8 2 982 1147 70 19 0 chr1 52141840 52141998 -145053434 + B2_Mm2 SINE B2 1 161 -34 2 982 342 0 0 0 chr1 52141998 52142036 -145053396 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 2 982 583 167 6 6 chr1 52142352 52142515 -145052917 + CT-rich Low_complexity Low_complexity 2 164 0 2 982 306 0 0 0 chr1 52142515 52142549 -145052883 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 982 195 277 147 10 chr1 52144021 52144123 -145051309 + MIRc SINE MIR 100 215 -53 2 982 601 254 34 101 chr1 52144704 52145002 -145050430 - RLTR15 LTR ERVK -81 278 1 2 982 260 272 263 0 chr1 52145143 52145257 -145050175 + RSINE1 SINE B4 5 148 -17 2 982 22 35 0 0 chr1 52145487 52145516 -145049916 + AT_rich Low_complexity Low_complexity 1 29 0 2 982 350 283 8 66 chr1 52146207 52146328 -145049104 + ID_B1 SINE B4 93 206 -18 2 982 1282 195 0 4 chr1 52146574 52146801 -145048631 - MTC LTR MaLR 0 421 196 2 982 507 194 0 0 chr1 52146801 52146909 -145048523 + T-rich Low_complexity Low_complexity 1 108 0 2 982 4167 53 2 0 chr1 52146912 52147421 -145048011 - L1_Mus1 LINE L1 0 6567 6058 2 982 3754 45 8 0 chr1 52147909 52148395 -145047037 - L1_Mus1 LINE L1 -491 6076 5587 2 982 497 191 64 0 chr1 52148397 52148491 -145046941 - MTC LTR MaLR -321 100 1 2 982 184 222 0 0 chr1 52148780 52148816 -145046616 - MER5A DNA MER1_type -26 163 128 2 982 635 227 204 24 chr1 52149166 52149458 -145045974 - MER21B LTR ERV1 -265 598 255 2 982 271 257 26 106 chr1 52149686 52149799 -145045633 + MT2B LTR ERVL 157 260 -341 2 982 650 235 29 0 chr1 52149700 52149836 -145045596 + B1_Mur1 SINE Alu 8 147 -2 2 982 261 252 207 110 chr1 52150055 52150282 -145045150 + MER115 DNA Tip100 414 662 -31 2 982 186 103 0 0 chr1 52150333 52150362 -145045070 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 982 325 294 72 18 chr1 52151090 52151201 -145044231 - MER5A1 DNA MER1_type -28 138 22 2 982 240 264 45 22 chr1 52151446 52151535 -145043897 - HAL1 LINE L1 -367 2140 2050 2 982 422 289 113 45 chr1 52151762 52151919 -145043513 - HAL1 LINE L1 -623 1884 1712 2 982 612 0 0 0 chr1 52151919 52151987 -145043445 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 2 982 422 289 113 45 chr1 52151987 52152166 -145043266 - HAL1 LINE L1 -796 1711 1525 2 982 24 32 0 0 chr1 52152415 52152446 -145042986 + AT_rich Low_complexity Low_complexity 1 31 0 2 982 984 153 0 0 chr1 52152972 52153142 -145042290 + CT-rich Low_complexity Low_complexity 2 171 0 2 982 1179 121 17 0 chr1 52154711 52154884 -145040548 - B2_Mm2 SINE B2 -15 180 5 2 982 407 239 0 84 chr1 52155455 52155574 -145039858 + PB1D10 SINE Alu 1 109 -8 2 982 22 70 0 0 chr1 52159173 52159216 -145036216 + AT_rich Low_complexity Low_complexity 1 43 0 2 982 288 0 0 0 chr1 52160302 52160334 -145035098 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 982 259 25 50 0 chr1 52160336 52160376 -145035056 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 982 238 309 0 42 chr1 52160377 52160448 -145034984 - ID4_ SINE ID -13 70 3 2 982 182 237 66 33 chr1 52160521 52160582 -145034850 + L2a LINE L2 3347 3409 -17 2 982 874 309 89 16 chr1 52160653 52160716 -145034716 + MER2 DNA MER2_type 1 68 -277 2 982 1138 65 0 0 chr1 52160716 52160854 -145034578 + B1_Mus1 SINE Alu 1 138 -10 2 982 874 309 89 16 chr1 52160854 52161106 -145034326 + MER2 DNA MER2_type 69 339 -6 2 982 286 299 76 8 chr1 52161587 52161705 -145033727 - ORR1E LTR MaLR -214 145 20 2 982 191 350 91 21 chr1 52163321 52163464 -145031968 - L3b LINE CR1 -114 368 216 2 982 369 162 0 0 chr1 52164796 52164864 -145030568 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 982 753 270 20 31 chr1 52165358 52165553 -145029879 - B3A SINE B2 -1 197 5 2 982 356 347 132 22 chr1 52165766 52165993 -145029439 - MLT1A0 LTR MaLR -11 354 103 2 982 323 302 131 56 chr1 52166036 52166250 -145029182 - ORR1E LTR MaLR -87 272 43 2 982 758 296 111 4 chr1 52166488 52166554 -145028878 + B4 SINE B4 2 72 -220 2 982 366 23 0 0 chr1 52166554 52166597 -145028835 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 122 758 296 111 4 chr1 52166597 52166774 -145028658 + B4 SINE B4 73 270 -22 2 983 231 295 0 114 chr1 52167457 52167545 -145027887 + RSINE1 SINE B4 82 159 -6 2 983 833 251 118 61 chr1 52167621 52168046 -145027386 + Charlie4a DNA MER1_type 8 456 -52 2 983 185 262 45 15 chr1 52169285 52169351 -145026081 - L2a LINE L2 -267 3159 3092 2 983 1477 53 0 31 chr1 52169696 52169889 -145025543 + B2_Mm2 SINE B2 1 187 -8 2 983 274 264 56 0 chr1 52169890 52169962 -145025470 + MER45A DNA Tip100 101 176 -2 3 983 646 250 24 63 chr1 52171258 52171463 -145023969 - B3A SINE B2 -1 197 1 3 983 344 264 52 52 chr1 52172583 52172699 -145022733 - MLT1H LTR MaLR -393 156 41 3 983 501 17 0 0 chr1 52172811 52172869 -145022563 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 983 202 349 38 38 chr1 52173257 52173388 -145022044 - L3 LINE CR1 -730 3759 3629 3 983 811 239 142 24 chr1 52173923 52174219 -145021213 - Lx9 LINE L1 -44 7600 7270 3 983 877 171 0 0 chr1 52174719 52174865 -145020567 - B1_Mur4 SINE Alu 0 150 5 3 983 595 257 106 27 chr1 52175767 52175955 -145019477 - B3 SINE B2 0 216 14 3 983 441 262 73 8 chr1 52178015 52178138 -145017294 - B1F1 SINE Alu -1 148 18 3 983 252 301 21 31 chr1 52178258 52178354 -145017078 + B4A SINE B4 180 274 -18 3 983 624 295 13 0 chr1 52178532 52178681 -145016751 + RSINE1 SINE B4 11 161 -4 3 983 216 0 0 0 chr1 52178893 52178917 -145016515 + (A)n Simple_repeat Simple_repeat 1 24 0 3 983 655 175 246 11 chr1 52179193 52179372 -145016060 + URR1B DNA MER1_type 5 225 0 3 983 430 266 88 6 chr1 52181261 52181425 -145014007 - RCHARR1 DNA MER1_type -87 887 710 3 983 1623 139 34 4 chr1 52181425 52181692 -145013740 + RLTR28 LTR ERVL 1 275 -249 3 983 1498 212 90 41 chr1 52181701 52182168 -145013264 - RLTR20D LTR ERVK -31 537 48 3 983 1433 112 28 20 chr1 52182183 52182430 -145013002 + RLTR28 LTR ERVL 270 518 -6 3 983 946 298 106 21 chr1 52182409 52182796 -145012636 - RCHARR1 DNA MER1_type -518 456 37 3 983 775 198 8 0 chr1 52183230 52183356 -145012076 - ETnERV2-int LTR ERVK -210 7196 7070 3 983 7554 36 2 3 chr1 52184630 52185528 -145009904 - L1Md_F2 LINE L1 0 6582 5699 3 983 483 257 49 68 chr1 52186215 52186378 -145009054 - B4A SINE B4 0 292 133 3 983 258 318 11 0 chr1 52187155 52187243 -145008189 + L1MD LINE L1 3780 3868 -2278 3 983 372 164 0 0 chr1 52187308 52187375 -145008057 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 983 23 0 0 0 chr1 52187526 52187549 -145007883 + AT_rich Low_complexity Low_complexity 1 23 0 3 983 257 288 138 0 chr1 52187572 52187652 -145007780 + ID_B1 SINE B4 127 217 -7 3 983 419 323 24 0 chr1 52188080 52188207 -145007225 + ID_B1 SINE B4 92 221 -3 3 983 232 250 43 130 chr1 52188927 52189042 -145006390 - MER5A1 DNA MER1_type -61 105 1 3 983 247 257 51 51 chr1 52189599 52189677 -145005755 + MTD LTR MaLR 213 290 -129 3 983 293 328 43 14 chr1 52189789 52189928 -145005504 + Charlie16a DNA MER1_type 66 208 -134 3 983 319 306 190 13 chr1 52190424 52190656 -145004776 + B4A SINE B4 2 274 -18 3 983 288 0 0 0 chr1 52190662 52190694 -145004738 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 983 310 229 0 0 chr1 52192739 52192800 -145002632 - MER20 DNA MER1_type -135 84 24 3 983 1420 226 82 18 chr1 52193266 52193609 -145001823 - MTE2a LTR MaLR 0 379 15 3 983 213 39 0 0 chr1 52194034 52194060 -145001372 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 983 811 138 62 55 chr1 52194564 52194710 -145000722 + B1_Mur4 SINE Alu 4 150 0 3 983 1990 206 15 7 chr1 52195389 52195799 -144999633 - MTD LTR MaLR -2 417 5 3 983 2369 201 89 26 chr1 52196267 52196360 -144999072 - RLTR20A2 LTR ERVK 0 578 492 3 983 189 0 0 0 chr1 52196360 52196381 -144999051 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 983 2369 201 89 26 chr1 52196381 52196828 -144998604 - RLTR20A2 LTR ERVK -87 491 6 3 983 225 291 18 0 chr1 52197587 52197642 -144997790 - PB1D10 SINE Alu -34 83 28 3 983 1287 111 0 0 chr1 52197681 52197861 -144997571 + B2_Mm2 SINE B2 2 181 -14 3 983 3057 134 6 49 chr1 52198065 52198597 -144996835 - RLTR28 LTR ERVL -14 510 2 3 983 323 244 133 0 chr1 52200709 52200799 -144994633 - PB1D7 SINE Alu -7 113 12 3 983 801 160 40 7 chr1 52202342 52202493 -144992939 - MTC LTR MaLR 0 421 266 3 983 1769 202 91 43 chr1 52202498 52202938 -144992494 - RMER4A LTR ERVK -5 461 1 3 983 1465 134 88 12 chr1 52202940 52203189 -144992243 - MTC LTR MaLR -152 269 2 3 983 817 118 31 23 chr1 52203335 52203465 -144991967 + B1_Mus2 SINE Alu 5 135 -12 3 983 1248 201 0 0 chr1 52204360 52204559 -144990873 - B3 SINE B2 -10 206 8 3 983 207 0 0 0 chr1 52204881 52204904 -144990528 + (CTG)n Simple_repeat Simple_repeat 3 25 0 3 983 911 279 246 7 chr1 52205145 52205591 -144989841 + MER82 DNA MER2_type 3 597 -56 3 983 338 226 27 54 chr1 52207121 52207233 -144988199 + PB1D7 SINE Alu 7 115 -5 3 983 192 97 0 0 chr1 52207427 52207458 -144987974 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 983 266 232 190 35 chr1 52208454 52208570 -144986862 + B1_Mur2 SINE Alu 3 136 -13 3 983 261 165 76 0 chr1 52208580 52208659 -144986773 + GA-rich Low_complexity Low_complexity 3 87 0 3 983 306 0 0 0 chr1 52210336 52210370 -144985062 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 983 378 0 0 0 chr1 52210370 52210411 -144985021 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 983 21 57 0 0 chr1 52213017 52213052 -144982380 + AT_rich Low_complexity Low_complexity 1 35 0 3 983 331 284 64 9 chr1 52214640 52214750 -144980682 + PB1D10 SINE Alu 1 116 -1 3 983 267 306 96 12 chr1 52214981 52215153 -144980279 - MIR SINE MIR -6 262 77 3 983 393 236 41 124 chr1 52215354 52215499 -144979933 - MER20 DNA MER1_type -34 185 53 3 983 1151 76 0 0 chr1 52217069 52217213 -144978219 - B1_Mus1 SINE Alu -2 146 3 3 983 24 32 0 0 chr1 52217734 52217765 -144977667 + AT_rich Low_complexity Low_complexity 1 31 0 3 983 703 188 9 166 chr1 52217827 52218038 -144977394 - B2_Mm2 SINE B2 -9 186 9 3 983 286 284 48 24 chr1 52218615 52218698 -144976734 - L2a LINE L2 0 3426 3342 3 983 892 213 20 50 chr1 52218811 52219009 -144976423 + B3 SINE B2 1 192 -24 3 983 1164 105 6 0 chr1 52219042 52219054 -144976378 - B2_Mm1a SINE B2 -20 173 162 3 983 207 0 0 0 chr1 52219054 52219077 -144976355 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 983 1164 105 6 0 chr1 52219077 52219236 -144976196 - B2_Mm1a SINE B2 -32 161 2 3 983 402 21 0 0 chr1 52221441 52221488 -144973944 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 983 1194 68 0 0 chr1 52221670 52221816 -144973616 + B1_Mus2 SINE Alu 2 147 0 3 983 210 105 0 0 chr1 52221822 52221860 -144973572 + (CAAAC)n Simple_repeat Simple_repeat 3 40 0 3 983 348 203 61 178 chr1 52227054 52227234 -144968198 - B3A SINE B2 -38 160 2 3 983 240 35 0 0 chr1 52229346 52229375 -144966057 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 983 270 276 28 37 chr1 52229839 52229948 -144965484 - PB1D10 SINE Alu -5 112 5 3 983 6915 94 29 34 chr1 52230439 52231501 -144963931 + Lx2 LINE L1 5587 6643 -354 3 983 1322 107 14 5 chr1 52231501 52231708 -144963724 + Lx2 LINE L1 6775 6983 -14 3 983 288 0 0 0 chr1 52232832 52232864 -144962568 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 983 189 0 0 0 chr1 52234198 52234219 -144961213 + (T)n Simple_repeat Simple_repeat 1 21 0 3 983 209 274 125 10 chr1 52234386 52234482 -144960950 + L2 LINE L2 2821 2927 -492 3 983 923 207 38 14 chr1 52234740 52234951 -144960481 + B3 SINE B2 1 216 0 3 983 1317 51 74 0 chr1 52234978 52235153 -144960279 + B2_Mm2 SINE B2 2 189 -6 3 983 396 0 0 0 chr1 52235609 52235653 -144959779 + (CTCA)n Simple_repeat Simple_repeat 2 45 0 3 983 1023 90 0 0 chr1 52237153 52237286 -144958146 + B1_Mus1 SINE Alu 1 133 -15 3 983 428 198 145 51 chr1 52237300 52237417 -144958015 + B3A SINE B2 2 129 -69 3 983 595 260 76 11 chr1 52239750 52239928 -144955504 - B3 SINE B2 -15 183 1 3 983 342 0 0 0 chr1 52241220 52241258 -144954174 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 983 186 143 0 0 chr1 52241258 52241293 -144954139 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 983 210 167 0 0 chr1 52242328 52242364 -144953068 + A-rich Low_complexity Low_complexity 1 36 0 3 983 21 36 0 0 chr1 52244214 52244242 -144951190 + AT_rich Low_complexity Low_complexity 1 28 0 3 983 863 241 52 0 chr1 52245861 52246035 -144949397 + B3 SINE B2 17 199 -17 3 983 21 0 0 0 chr1 52246178 52246199 -144949233 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 342 255 10 20 chr1 52246480 52246580 -144948852 + RSINE1 SINE B4 31 129 -36 3 983 324 83 0 0 chr1 52246970 52247018 -144948414 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 983 11165 83 25 10 chr1 52248789 52251267 -144944165 + L1VL1 LINE L1 410 2932 -2951 3 983 2437 85 28 36 chr1 52251270 52251662 -144943770 + L1_Mus3 LINE L1 6247 6635 -3 3 983 21 0 0 0 chr1 52253210 52253231 -144942201 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 704 179 44 22 chr1 52254093 52254230 -144941202 - B1_Mm SINE Alu -7 140 1 3 983 460 244 30 0 chr1 52254236 52254371 -144941061 - B3 SINE B2 -2 214 10 3 983 216 0 0 0 chr1 52255005 52255029 -144940403 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 983 504 276 92 46 chr1 52255402 52255554 -144939878 + B3 SINE B2 4 162 -54 3 983 248 0 31 0 chr1 52255581 52255613 -144939819 + (TATG)n Simple_repeat Simple_repeat 2 34 0 3 983 564 290 158 73 chr1 52255781 52256041 -144939391 + B4A SINE B4 3 284 -8 3 983 26 0 0 0 chr1 52258305 52258331 -144937101 + AT_rich Low_complexity Low_complexity 1 26 0 3 983 229 263 91 0 chr1 52260268 52260367 -144935065 - PB1D9 SINE Alu -12 108 1 3 983 21 57 0 0 chr1 52260675 52260710 -144934722 + AT_rich Low_complexity Low_complexity 1 35 0 3 983 24 53 0 0 chr1 52261993 52262031 -144933401 + AT_rich Low_complexity Low_complexity 1 38 0 3 983 762 221 49 4 chr1 52264816 52264990 -144930442 - B3 SINE B2 -1 197 25 4 983 210 211 26 0 chr1 52265160 52265198 -144930234 + PB1D9 SINE Alu 1 39 -81 4 983 410 311 106 67 chr1 52265436 52265812 -144929620 + L1MB8 LINE L1 5731 6121 -57 4 983 448 308 25 13 chr1 52266076 52266234 -144929198 + RSINE1 SINE B4 3 162 -3 4 983 3083 54 26 0 chr1 52266286 52266676 -144928756 + MTB LTR MaLR 1 400 0 4 983 23 33 0 0 chr1 52266851 52266881 -144928551 + AT_rich Low_complexity Low_complexity 1 30 0 4 983 725 226 69 44 chr1 52267293 52267497 -144927935 - B3 SINE B2 -7 209 1 4 983 476 296 31 16 chr1 52268686 52268813 -144926619 - ID_B1 SINE B4 -14 210 82 4 983 32 0 0 0 chr1 52269284 52269316 -144926116 + AT_rich Low_complexity Low_complexity 1 32 0 4 983 1946 109 0 3 chr1 52269386 52269678 -144925754 - L1_Mus4 LINE L1 -90 6546 6274 4 983 22 35 0 0 chr1 52269680 52269709 -144925723 + AT_rich Low_complexity Low_complexity 1 29 0 4 983 236 283 167 0 chr1 52270200 52270320 -144925112 + B1F2 SINE Alu 2 141 -8 4 983 318 309 110 51 chr1 52270620 52270893 -144924539 - B4A SINE B4 -2 290 2 4 983 322 234 51 13 chr1 52271168 52271246 -144924186 + ID_B1 SINE B4 142 222 -2 4 983 368 248 102 79 chr1 52271791 52271918 -144923514 - ID_B1 SINE B4 -15 209 80 4 983 314 347 63 51 chr1 52272010 52272062 -144923370 + B4 SINE B4 39 92 -200 4 983 630 207 36 29 chr1 52272062 52272201 -144923231 + B1_Mur3 SINE Alu 1 140 -9 4 983 1114 152 96 5 chr1 52273697 52273895 -144921537 + B3 SINE B2 1 216 0 4 983 186 43 0 0 chr1 52275556 52275579 -144919853 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 983 252 255 0 0 chr1 52275858 52275909 -144919523 + polypurine Low_complexity Low_complexity 2 52 0 4 983 616 241 50 39 chr1 52277071 52277338 -144918094 - L1MA4 LINE L1 -1548 5925 5686 4 983 705 62 10 10 chr1 52277343 52277441 -144917991 + B1_Mm SINE Alu 50 147 0 4 983 835 301 142 11 chr1 52277528 52278171 -144917261 - L1MA4 LINE L1 -537 5619 4899 4 983 194 338 166 37 chr1 52278400 52278563 -144916869 + MIR SINE MIR 54 237 -25 4 983 469 273 219 0 chr1 52278612 52278740 -144916692 - B3A SINE B2 -38 160 5 4 983 401 257 26 1 chr1 52279024 52279131 -144916301 + PB1D7 SINE Alu 1 112 -8 4 983 294 176 0 38 chr1 52279085 52279138 -144916294 + ID_B1 SINE B4 173 223 -1 4 983 375 41 0 0 chr1 52279212 52279261 -144916171 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 983 438 244 35 84 chr1 52279640 52279783 -144915649 - RSINE1 SINE B4 -28 137 2 4 983 194 158 53 0 chr1 52279965 52280003 -144915429 - MIRb SINE MIR -44 224 185 4 983 180 293 57 119 chr1 52280072 52280231 -144915201 - MIRm SINE MIR -112 164 16 4 983 244 322 0 88 chr1 52280661 52280674 -144914758 + ID SINE ID 77 80 -144 4 983 325 298 26 17 chr1 52280674 52280790 -144914642 + PB1D10 SINE Alu 1 117 0 4 983 316 299 93 8 chr1 52281036 52281154 -144914278 + MTD LTR MaLR 25 152 -267 4 983 248 222 0 87 chr1 52281246 52281315 -144914117 + MTD LTR MaLR 322 384 -35 4 983 2043 179 89 0 chr1 52281317 52281697 -144913735 + MTD LTR MaLR 1 414 -5 4 983 333 0 0 0 chr1 52282529 52282566 -144912866 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 983 309 82 0 0 chr1 52282566 52282615 -144912817 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 4 983 1375 145 118 9 chr1 52282615 52282963 -144912469 - RLTR20C LTR ERVK -125 409 24 4 983 21 57 0 0 chr1 52283349 52283384 -144912048 + AT_rich Low_complexity Low_complexity 1 35 0 4 983 740 211 149 12 chr1 52284440 52284608 -144910824 + B3 SINE B2 2 192 -24 4 983 639 264 69 6 chr1 52285136 52285311 -144910121 - B3A SINE B2 -11 187 2 4 983 193 260 153 70 chr1 52286780 52286937 -144908495 - L4 LINE RTE -93 1936 1767 4 983 971 108 0 45 chr1 52288040 52288195 -144907237 + B1_Mus1 SINE Alu 1 148 0 4 983 22 0 0 0 chr1 52289275 52289297 -144906135 + GC_rich Low_complexity Low_complexity 1 22 0 4 983 252 0 0 0 chr1 52289538 52289566 -144905866 + (CTG)n Simple_repeat Simple_repeat 1 28 0 4 983 28 48 0 0 chr1 52289622 52289664 -144905768 + GC_rich Low_complexity Low_complexity 1 42 0 4 983 22 35 0 0 chr1 52289704 52289733 -144905699 + GC_rich Low_complexity Low_complexity 1 29 0 4 983 261 128 0 0 chr1 52289967 52290014 -144905418 + (CCG)n Simple_repeat Simple_repeat 2 48 0 4 983 338 260 10 20 chr1 52291601 52291699 -144903733 + B4A SINE B4 1 97 -195 4 983 1206 167 13 47 chr1 52292535 52292768 -144902664 + URR1B DNA MER1_type 1 225 0 4 983 11660 16 1 0 chr1 52292927 52294330 -144901102 + L1Md_T LINE L1 4183 5586 -297 4 983 8326 32 0 16 chr1 52294330 52295340 -144900092 + L1Md_T LINE L1 5587 6580 -2 4 983 423 0 0 0 chr1 52295369 52295416 -144900016 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 983 180 152 0 0 chr1 52296491 52296524 -144898908 + (CATGC)n Simple_repeat Simple_repeat 1 33 0 4 983 2397 14 3 3 chr1 52296980 52297273 -144898159 + MT-int LTR MaLR 729 1021 -77 4 983 2378 4 0 0 chr1 52297295 52297573 -144897859 - MERVL-int LTR ERVL -5013 472 195 4 984 234 271 0 0 chr1 52297820 52297905 -144897527 + CT-rich Low_complexity Low_complexity 1 85 0 4 984 423 56 0 0 chr1 52297908 52297962 -144897470 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 984 506 186 157 0 chr1 52297963 52298065 -144897367 - RSINE1 SINE B4 -41 124 7 4 984 965 198 16 11 chr1 52299638 52299822 -144895610 - B2_Mm2 SINE B2 -10 185 1 4 984 417 244 112 22 chr1 52300363 52300497 -144894935 - MTD LTR MaLR -272 147 2 4 984 1032 223 14 19 chr1 52300568 52300778 -144894654 - B3 SINE B2 -1 215 7 4 984 1321 248 65 62 chr1 52301056 52301473 -144893959 - MTD LTR MaLR -1 418 1 4 984 181 385 9 35 chr1 52301749 52301862 -144893570 + L2c LINE L2 3059 3168 -219 4 984 1097 105 0 0 chr1 52302022 52302165 -144893267 + B1_Mus1 SINE Alu 1 143 -5 4 984 267 301 68 68 chr1 52302326 52302458 -144892974 - L2 LINE L2 -446 2973 2842 4 984 328 283 86 57 chr1 52303183 52303288 -144892144 + PB1D10 SINE Alu 2 109 -8 4 984 3993 139 32 14 chr1 52304351 52305015 -144890417 - Lx3B LINE L1 -2 6971 6296 4 984 1005 59 82 0 chr1 52305428 52305563 -144889869 + B1_Mm SINE Alu 2 147 0 4 984 930 141 14 0 chr1 52305597 52305739 -144889693 + B1_Mus1 SINE Alu 5 148 0 4 984 495 48 0 0 chr1 52306689 52306751 -144888681 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 984 234 0 0 0 chr1 52306751 52306776 -144888656 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 984 216 341 65 29 chr1 52307204 52307343 -144888089 + MIRb SINE MIR 117 260 -8 4 984 442 365 58 29 chr1 52307340 52307614 -144887818 + L2b LINE L2 2754 3035 -384 4 984 242 354 101 7 chr1 52307660 52307808 -144887624 + MamRep488 DNA hAT 58 219 0 4 984 211 256 123 37 chr1 52307831 52307912 -144887520 + L2b LINE L2 3052 3139 -236 4 984 364 273 80 18 chr1 52308070 52308182 -144887250 + PB1D7 SINE Alu 2 120 0 4 984 451 153 85 80 chr1 52309136 52309245 -144886187 + PB1D10 SINE Alu 5 115 -2 4 984 189 0 0 0 chr1 52309460 52309481 -144885951 + (CCCTG)n Simple_repeat Simple_repeat 1 21 0 4 984 606 263 73 81 chr1 52309840 52310088 -144885344 - B4A SINE B4 0 292 47 4 984 713 268 38 0 chr1 52310289 52310498 -144884934 - ID_B1 SINE B4 -7 217 1 4 984 340 313 40 0 chr1 52312772 52312871 -144882561 + PB1D10 SINE Alu 3 105 -12 4 984 317 303 170 16 chr1 52312951 52313139 -144882293 + MIRb SINE MIR 27 243 -25 4 984 533 210 144 37 chr1 52313619 52313807 -144881625 - ID_B1 SINE B4 -16 208 1 4 984 661 235 94 30 chr1 52314479 52314681 -144880751 - ID_B1 SINE B4 -8 216 2 4 984 539 252 41 15 chr1 52315143 52315310 -144880122 + B3 SINE B2 1 186 -7 4 984 317 263 53 0 chr1 52315332 52315408 -144880024 + ID4_ SINE ID 4 83 0 4 984 482 300 13 26 chr1 52316738 52316872 -144878560 - PB1D10 SINE Alu -15 133 10 4 984 578 292 7 34 chr1 52316895 52317044 -144878388 - B1F2 SINE Alu -1 148 4 4 984 237 350 100 0 chr1 52317270 52317370 -144878062 - RSINE1 SINE B4 0 165 56 4 984 1122 83 0 0 chr1 52318142 52318287 -144877145 + B1_Mm SINE Alu 1 145 -2 4 984 194 81 27 0 chr1 52318294 52318331 -144877101 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 4 984 1505 213 105 72 chr1 52319002 52319392 -144876040 + RLTR11A2 LTR ERVK 1 421 -106 4 984 267 31 0 0 chr1 52319392 52319424 -144876008 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 984 1505 213 105 72 chr1 52319424 52319530 -144875902 + RLTR11A2 LTR ERVK 422 513 -14 4 984 245 208 0 0 chr1 52319647 52319695 -144875737 + LTR90B LTR LTR 2 49 -747 4 984 1107 100 23 6 chr1 52321016 52321187 -144874245 - B2_Mm2 SINE B2 -7 188 15 4 984 566 313 72 48 chr1 52321997 52322205 -144873227 + B4A SINE B4 39 251 -41 4 984 333 0 0 0 chr1 52322223 52322260 -144873172 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 984 405 0 0 0 chr1 52322260 52322304 -144873128 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 984 905 286 127 0 chr1 52322361 52322552 -144872880 - B4A SINE B4 0 292 87 4 984 2186 69 33 3 chr1 52322552 52322856 -144872576 - L1Md_F3 LINE L1 -14 6570 6258 4 984 905 286 127 0 chr1 52322856 52322923 -144872509 - B4A SINE B4 -206 86 3 4 984 540 326 30 65 chr1 52324021 52324283 -144871149 - MER102a DNA MER1_type -6 324 72 4 984 835 197 0 7 chr1 52324294 52324442 -144870990 + B1_Mur2 SINE Alu 3 149 0 4 984 309 109 31 15 chr1 52324462 52324527 -144870905 + GA-rich Low_complexity Low_complexity 4 69 0 5 984 209 167 17 100 chr1 52325050 52325110 -144870322 + MIRb SINE MIR 127 181 -87 5 984 352 233 0 156 chr1 52325942 52326064 -144869368 - PB1D10 SINE Alu -1 116 14 5 984 626 258 60 42 chr1 52325962 52326128 -144869304 - ID_B1 SINE B4 -34 190 22 5 984 504 296 38 0 chr1 52327272 52327485 -144867947 - CR1_Mam LINE CR1 -576 1628 1408 5 984 26 30 0 0 chr1 52327649 52327682 -144867750 + AT_rich Low_complexity Low_complexity 1 33 0 5 984 227 296 14 40 chr1 52327814 52327888 -144867544 + LTR78 LTR ERV1 1233 1304 0 5 984 915 208 45 0 chr1 52327999 52328201 -144867231 + B3 SINE B2 2 212 -4 5 984 298 291 16 64 chr1 52329248 52329373 -144866059 - RMER30 DNA MER1_type -75 127 9 5 984 288 301 21 0 chr1 52329470 52329563 -144865869 - PB1D10 SINE Alu -9 108 14 5 984 237 83 0 0 chr1 52329591 52329627 -144865805 + (T)n Simple_repeat Simple_repeat 1 36 0 5 984 213 39 0 0 chr1 52329630 52329656 -144865776 + (TCC)n Simple_repeat Simple_repeat 3 28 0 5 984 270 81 0 0 chr1 52329837 52329874 -144865558 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 984 545 268 0 24 chr1 52330006 52330132 -144865300 - RLTR30 LTR ERV1 -256 123 1 5 984 415 265 63 180 chr1 52330135 52330374 -144865058 - MTD LTR MaLR -96 323 113 5 984 1911 172 67 21 chr1 52330381 52330783 -144864649 - ORR1A4 LTR MaLR -8 411 1 5 984 381 363 93 5 chr1 52330787 52330981 -144864451 - LTR16B2 LTR ERVL -190 272 62 5 984 753 149 270 0 chr1 52331803 52331977 -144863455 + URR1B DNA MER1_type 5 225 0 5 984 210 71 0 0 chr1 52332108 52332136 -144863296 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 5 984 715 254 158 12 chr1 52332144 52332391 -144863041 - B4A SINE B4 -6 286 4 5 984 182 272 83 46 chr1 52332430 52332538 -144862894 - L2a LINE L2 -5 3421 3310 5 984 1676 116 84 7 chr1 52333442 52333738 -144861694 - ORR1A2 LTR MaLR -8 319 1 5 984 462 293 42 24 chr1 52333738 52333898 -144861534 + B4A SINE B4 124 286 -6 5 984 730 260 204 53 chr1 52334813 52335211 -144860221 + MLT1H LTR MaLR 84 541 -8 5 984 512 322 11 6 chr1 52335311 52335492 -144859940 + Charlie10b DNA MER1_type 1 182 -60 5 984 296 285 146 56 chr1 52335568 52335771 -144859661 - MER58B DNA MER1_type -16 325 5 5 984 331 84 56 0 chr1 52335811 52335882 -144859550 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 5 984 581 140 37 18 chr1 52337920 52338029 -144857403 + RMER6C LTR ERVK 1 111 -579 5 984 292 196 18 0 chr1 52338003 52338059 -144857373 + MT2B LTR ERVL 170 226 -375 5 984 1244 34 7 0 chr1 52338059 52338207 -144857225 - L1_Mus2 LINE L1 -227 6339 6191 5 984 522 308 122 82 chr1 52339980 52340049 -144855383 - MLT1B LTR MaLR 0 467 407 5 984 4933 52 30 47 chr1 52340049 52340716 -144854716 + L1_Mus2 LINE L1 5911 6566 0 5 984 546 288 98 61 chr1 52340716 52341095 -144854337 - MLT1B LTR MaLR -61 406 1 5 984 1017 207 5 37 chr1 52341440 52341461 -144853971 - B3 SINE B2 -7 209 194 5 984 2759 146 7 7 chr1 52341461 52341882 -144853550 + MTC LTR MaLR 1 421 0 5 984 1017 207 5 37 chr1 52341882 52342076 -144853356 - B3 SINE B2 -23 193 1 5 984 376 292 138 7 chr1 52342220 52342365 -144853067 + MER74A LTR ERVL 1 164 -394 5 984 268 299 39 0 chr1 52342436 52342513 -144852919 + ORR1E LTR MaLR 6 85 -274 5 984 907 86 105 13 chr1 52342811 52342964 -144852468 + B2_Mm2 SINE B2 3 169 -26 5 984 330 308 88 26 chr1 52343010 52343237 -144852195 - L1MA6 LINE L1 -63 6237 5997 5 984 246 337 48 12 chr1 52343259 52343343 -144852089 + RSINE1 SINE B4 3 89 -76 5 984 245 308 43 11 chr1 52343469 52343561 -144851871 + PB1D10 SINE Alu 21 115 -2 5 984 266 87 0 21 chr1 52343638 52343685 -144851747 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 5 984 399 286 20 0 chr1 52343840 52343938 -144851494 + ID_B1 SINE B4 115 214 -10 5 984 230 299 61 10 chr1 52343993 52344091 -144851341 + PB1 SINE Alu 5 107 -20 5 984 337 260 15 68 chr1 52344251 52344383 -144851049 + B1F1 SINE Alu 20 144 -5 5 984 306 288 149 46 chr1 52346647 52347056 -144848376 + MTE-int LTR MaLR 56 502 -868 5 984 1566 314 53 83 chr1 52347259 52347755 -144847677 + MTE-int LTR MaLR 863 1341 -239 5 984 844 202 120 21 chr1 52347755 52347947 -144847485 - B3 SINE B2 -5 211 1 5 984 787 208 67 29 chr1 52347954 52348162 -144847270 - B3 SINE B2 0 216 1 5 984 1566 314 53 83 chr1 52348162 52348368 -144847064 + MTE-int LTR MaLR 1342 1552 -28 5 984 411 198 124 18 chr1 52348499 52348612 -144846820 + RCHARR1 DNA MER1_type 3 127 -847 5 984 453 273 6 115 chr1 52348620 52348777 -144846655 + ID_B1 SINE B4 84 223 -1 5 984 557 141 0 10 chr1 52348777 52348877 -144846555 + GA-rich Low_complexity Low_complexity 1 99 0 5 984 2552 262 53 22 chr1 52348885 52349709 -144845723 + RCHARR1 DNA MER1_type 125 974 0 5 984 262 246 33 0 chr1 52349778 52349839 -144845593 + GA-rich Low_complexity Low_complexity 3 65 0 5 984 837 262 11 0 chr1 52352383 52352570 -144842862 + B3A SINE B2 9 197 -1 5 984 602 300 12 0 chr1 52352739 52352899 -144842533 + RSINE1 SINE B4 4 165 0 5 984 464 310 91 0 chr1 52353703 52353900 -144841532 + Arthur1C DNA Tip100 88 302 -61 5 984 369 0 0 0 chr1 52354024 52354065 -144841367 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 984 486 0 0 0 chr1 52354065 52354118 -144841314 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 984 1098 239 14 32 chr1 52355478 52355755 -144839677 + B4 SINE B4 3 274 -18 5 984 239 154 0 15 chr1 52355800 52355866 -144839566 + CT-rich Low_complexity Low_complexity 2 66 0 5 984 375 78 0 0 chr1 52357124 52357175 -144838257 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 984 245 98 24 0 chr1 52357608 52357649 -144837783 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 984 393 323 6 85 chr1 52357870 52358046 -144837386 + RSINE1 SINE B4 3 164 -1 5 984 882 213 45 0 chr1 52358660 52358862 -144836570 - B3 SINE B2 -5 211 1 5 984 501 284 7 0 chr1 52358887 52359035 -144836397 - B1F2 SINE Alu 0 149 1 5 984 430 312 40 29 chr1 52359171 52359346 -144836086 + MER5A DNA MER1_type 13 189 0 5 984 621 40 0 0 chr1 52359388 52359464 -144835968 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 984 367 316 58 0 chr1 52359466 52359691 -144835741 - Lx8 LINE L1 -55 7418 7181 5 984 186 43 0 0 chr1 52359812 52359835 -144835597 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 5 984 397 278 140 12 chr1 52359838 52360002 -144835430 - Lx8 LINE L1 -334 7139 6955 5 984 382 358 58 27 chr1 52360060 52360540 -144834892 + Lx8 LINE L1 6977 7471 -2 5 984 634 243 71 28 chr1 52360812 52360994 -144834438 - B3A SINE B2 -4 194 5 5 984 367 226 56 56 chr1 52361012 52361120 -144834312 - B1F2 SINE Alu 0 149 42 5 984 245 0 0 160 chr1 52361123 52361248 -144834184 + (CTCTG)n Simple_repeat Simple_repeat 1 105 0 5 984 296 151 19 0 chr1 52361256 52361309 -144834123 - B1_Mus2 SINE Alu -88 59 6 5 984 957 69 8 0 chr1 52361528 52361659 -144833773 - B2_Mm2 SINE B2 -62 133 2 5 984 259 266 17 34 chr1 52365634 52365813 -144829619 + (CATA)n Simple_repeat Simple_repeat 4 179 0 5 984 1943 81 80 3 chr1 52365926 52366225 -144829207 - ORR1A2 LTR MaLR -5 322 1 5 984 10463 134 23 29 chr1 52366226 52367898 -144827534 - ORR1A2-int LTR MaLR -1 1791 96 5 984 1029 38 98 0 chr1 52367898 52368031 -144827401 + B1_Mus2 SINE Alu 2 147 0 5 984 10463 134 23 29 chr1 52368031 52368161 -144827271 - ORR1A2-int LTR MaLR -1697 95 1 5 984 2216 112 19 0 chr1 52368161 52368482 -144826950 - ORR1A2 LTR MaLR 0 327 1 5 984 593 296 97 54 chr1 52368902 52369294 -144826138 - MT2A LTR ERVL 0 533 125 5 984 285 236 59 9 chr1 52369439 52369554 -144825878 - MTD LTR MaLR 0 421 296 5 984 2925 70 200 9 chr1 52369554 52369984 -144825448 + RLTR1B LTR ERV1 1 512 0 5 984 67957 21 1 1 chr1 52369984 52377544 -144817888 + MMERGLN-int LTR ERV1 1 7556 0 5 984 3004 59 200 9 chr1 52377544 52377974 -144817458 + RLTR1B LTR ERV1 1 512 0 5 984 768 204 38 0 chr1 52377976 52378133 -144817299 - MTD LTR MaLR -122 297 135 5 984 582 200 106 14 chr1 52378223 52378365 -144817067 - MTD LTR MaLR -257 162 8 5 984 228 35 0 0 chr1 52379392 52379421 -144816011 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 984 500 266 46 47 chr1 52380300 52380510 -144814922 - B2_Mm2 SINE B2 0 216 8 5 984 911 123 11 17 chr1 52380521 52380695 -144814737 + CT-rich Low_complexity Low_complexity 4 176 0 5 984 500 250 182 0 chr1 52381377 52381509 -144813923 + B3 SINE B2 1 156 -60 5 984 23 33 0 0 chr1 52382366 52382396 -144813036 + AT_rich Low_complexity Low_complexity 1 30 0 5 984 718 240 23 23 chr1 52382800 52382975 -144812457 + ID_B1 SINE B4 43 217 -7 5 984 1034 243 82 63 chr1 52382976 52383421 -144812011 - RMER16 LTR ERVK 0 533 1 5 984 365 247 60 36 chr1 52383735 52383903 -144811529 + MLT1B LTR MaLR 28 199 -191 5 984 4583 42 2 4 chr1 52383969 52384520 -144810912 - L1Md_F2 LINE L1 0 6582 6033 5 984 1275 51 0 0 chr1 52384521 52384677 -144810755 + L1Md_F2 LINE L1 5873 6028 -554 5 984 181 296 84 0 chr1 52384834 52384905 -144810527 + L2c LINE L2 3050 3126 -249 5 984 26 50 0 0 chr1 52384975 52385015 -144810417 + AT_rich Low_complexity Low_complexity 1 40 0 5 984 185 296 0 0 chr1 52385110 52385154 -144810278 + L2c LINE L2 3334 3377 -10 5 984 233 284 0 15 chr1 52385258 52385326 -144810106 - Lx8 LINE L1 -2 7471 7405 5 984 3122 134 29 25 chr1 52385443 52385964 -144809468 + RLTR28 LTR ERVL 2 524 0 5 984 304 250 13 13 chr1 52387083 52387160 -144808272 + MIRb SINE MIR 115 191 -77 5 984 3426 39 0 19 chr1 52387762 52388184 -144807248 - L1Md_F2 LINE L1 0 6582 6169 5 984 273 336 0 25 chr1 52389894 52390013 -144805419 + Lx9 LINE L1 5861 5976 -1668 5 984 3082 242 60 30 chr1 52390054 52390172 -144805260 + Lx9 LINE L1 6138 6260 -1384 5 984 360 0 0 0 chr1 52390172 52390212 -144805220 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 984 1894 139 118 3 chr1 52390214 52390552 -144804880 - ORR1C1 LTR MaLR -1 377 1 5 984 3082 242 60 30 chr1 52390552 52391319 -144804113 + Lx9 LINE L1 6261 7052 -592 5 984 2877 140 7 13 chr1 52391756 52392218 -144803214 + RMER6B LTR ERVK 1 459 -2 5 984 356 227 13 0 chr1 52392421 52392496 -144802936 - PB1D10 SINE Alu -2 115 40 5 984 3045 144 24 18 chr1 52394335 52394880 -144800552 - RMER13A LTR ERVK -312 548 1 5 984 198 0 0 0 chr1 52396045 52396067 -144799365 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 6 984 3594 323 55 55 chr1 52396437 52398566 -144796866 - RodERV21-int LTR ERV1 -145 4846 2718 6 984 1850 231 35 50 chr1 52398831 52399292 -144796140 - RodERV21-int LTR ERV1 -2345 2646 2193 6 984 180 0 0 0 chr1 52399700 52399720 -144795712 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 984 330 303 108 19 chr1 52400401 52400559 -144794873 - L1MC4 LINE L1 -5991 224 53 6 984 2214 194 48 48 chr1 52400578 52401061 -144794371 + RLTR20B3 LTR ERVK 1 470 -107 6 984 313 52 69 0 chr1 52401061 52401119 -144794313 + (TCTCTG)n Simple_repeat Simple_repeat 4 65 0 6 984 2214 194 48 48 chr1 52401119 52401156 -144794276 + RLTR20B3 LTR ERVK 471 520 -57 6 984 1300 135 91 25 chr1 52402102 52402345 -144793087 - Lx3C LINE L1 -819 6157 5899 6 984 3401 203 64 81 chr1 52402683 52403979 -144791453 - RMER3D-int LTR ERVK -1231 1611 1 6 984 2246 172 22 20 chr1 52403979 52404635 -144790797 - RLTR31_Mm LTR ERVK 0 561 1 6 984 445 232 0 0 chr1 52404635 52404717 -144790715 - B1_Mus1 SINE Alu -65 83 2 6 984 241 209 85 85 chr1 52404741 52404835 -144790597 - L1MB1 LINE L1 -46 6122 6029 6 984 452 300 56 34 chr1 52404848 52404867 -144790565 - L1MB1 LINE L1 -112 6056 6042 6 984 259 291 25 0 chr1 52404867 52404946 -144790486 - ID4_ SINE ID 0 83 3 6 984 452 300 56 34 chr1 52404946 52405195 -144790237 - L1MB1 LINE L1 -127 6041 5782 6 984 915 59 126 0 chr1 52405300 52405435 -144789997 + Lx LINE L1 6284 6435 -219 6 984 13772 124 79 15 chr1 52405430 52406340 -144789092 - L1_Mur1 LINE L1 -1983 3903 2896 6 984 696 12 0 0 chr1 52406340 52406421 -144789011 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 6 984 13772 124 79 15 chr1 52406421 52407974 -144787458 - L1_Mur1 LINE L1 -2991 2895 1284 6 984 231 102 0 109 chr1 52407980 52408035 -144787397 + MTC-int LTR MaLR 1035 1083 -175 6 984 765 83 0 0 chr1 52408042 52408150 -144787282 - B1_Mm SINE Alu 0 147 40 6 984 790 108 137 6 chr1 52408150 52408318 -144787114 + MTC-int LTR MaLR 1069 1258 0 6 984 2437 154 63 0 chr1 52408318 52408714 -144786718 + MTC LTR MaLR 1 421 0 6 984 711 219 101 32 chr1 52408961 52409150 -144786282 + L1MB4 LINE L1 5784 5985 -195 6 984 471 255 25 59 chr1 52409555 52409759 -144785673 + L1MB4 LINE L1 5984 6180 0 6 984 468 0 0 0 chr1 52409976 52410028 -144785404 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 984 216 0 0 0 chr1 52410679 52410703 -144784729 + (A)n Simple_repeat Simple_repeat 1 24 0 6 984 592 226 0 0 chr1 52412927 52413042 -144782390 + ID_B1 SINE B4 105 219 -5 6 984 819 236 48 9 chr1 52413044 52413079 -144782353 + L1ME2 LINE L1 5660 5703 -461 6 984 4147 42 6 2 chr1 52413079 52413579 -144781853 - L1Md_F2 LINE L1 -2 6580 6079 6 984 3372 42 0 0 chr1 52413579 52413980 -144781452 + L1Md_F2 LINE L1 5673 6073 -509 6 984 239 267 39 26 chr1 52414128 52414205 -144781227 - L1M2 LINE L1 -575 5722 5645 6 984 405 264 9 19 chr1 52414271 52414379 -144781053 - ID_B1 SINE B4 -2 222 116 6 984 441 0 0 0 chr1 52415361 52415410 -144780022 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 984 615 271 0 54 chr1 52416052 52416200 -144779232 + RSINE1 SINE B4 3 142 -23 6 984 218 208 0 0 chr1 52416354 52416402 -144779030 + T-rich Low_complexity Low_complexity 1 48 0 6 984 5537 57 0 10 chr1 52416408 52417101 -144778331 - L1_Mus1 LINE L1 -1 6566 5881 6 984 24 32 0 0 chr1 52418120 52418151 -144777281 + AT_rich Low_complexity Low_complexity 1 31 0 6 984 529 232 92 0 chr1 52418433 52418575 -144776857 + RSINE1 SINE B4 4 158 -7 6 984 5318 118 96 0 chr1 52418710 52419584 -144775848 - RMER17B LTR ERVK 0 958 1 6 984 592 295 70 70 chr1 52419674 52419947 -144775485 - B4A SINE B4 -18 274 2 6 984 1044 244 49 6 chr1 52421602 52421896 -144773536 - Lx7 LINE L1 -1730 5966 5666 6 984 322 93 0 0 chr1 52421928 52421971 -144773461 - Lx2A1 LINE L1 -423 6585 6543 6 984 2451 113 27 3 chr1 52421966 52422337 -144773095 - Lx2A1 LINE L1 -49 6959 6580 6 984 283 127 0 31 chr1 52422345 52422410 -144773022 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 6 984 1125 89 148 0 chr1 52424671 52424840 -144770592 - B2_Mm2 SINE B2 0 195 2 6 984 302 333 0 11 chr1 52425559 52425653 -144769779 + RSINE1 SINE B4 3 95 -70 6 984 303 104 0 0 chr1 52425763 52425811 -144769621 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 6 984 2445 70 39 8 chr1 52425811 52426169 -144769263 - MTB LTR MaLR 0 400 32 6 984 921 207 69 44 chr1 52426496 52426814 -144768618 - RLTR15 LTR ERVK -33 326 1 6 984 470 293 43 94 chr1 52427150 52427393 -144768039 + L1ME1 LINE L1 5669 5911 -268 6 984 3541 20 2 0 chr1 52427393 52427788 -144767644 + MTA_Mm LTR MaLR 1 396 0 6 15 9823 17 0 0 chr1 52427788 52428886 -144766546 + MTA_Mm-int LTR MaLR 1 1098 0 6 985 3541 20 2 0 chr1 52428886 52429281 -144766151 + MTA_Mm LTR MaLR 1 396 0 6 985 470 293 43 94 chr1 52429281 52429427 -144766005 + L1ME1 LINE L1 5912 6038 -141 6 985 3564 23 0 0 chr1 52429868 52430264 -144765168 - MTA_Mm LTR MaLR 0 396 1 6 985 365 278 9 0 chr1 52430386 52430494 -144764938 - MTA_Mm-int LTR MaLR -3 1255 1147 6 985 1417 221 42 23 chr1 52430586 52431047 -144764385 - MTA_Mm-int LTR MaLR -755 503 1 6 985 678 246 131 76 chr1 52431060 52431350 -144764082 - MTD LTR MaLR -13 406 101 6 985 1730 181 28 34 chr1 52431321 52431676 -144763756 + ORR1B2 LTR MaLR 7 359 -8 6 985 456 123 12 24 chr1 52431680 52431763 -144763669 - MTD LTR MaLR -280 139 58 6 985 469 254 118 32 chr1 52431956 52432143 -144763289 + MTD LTR MaLR 1 203 -216 6 985 534 243 28 14 chr1 52432833 52432975 -144762457 + MTD LTR MaLR 262 405 -14 6 985 871 160 36 30 chr1 52432985 52433153 -144762279 - MTC-int LTR MaLR -882 376 208 6 985 248 243 51 51 chr1 52433697 52433775 -144761657 + B3A SINE B2 2 79 -119 6 985 354 209 43 11 chr1 52434075 52434167 -144761265 - MLT1A1 LTR MaLR -9 399 305 6 985 227 242 117 0 chr1 52434271 52434357 -144761075 - B1F SINE Alu -5 112 3 6 985 3128 82 5 5 chr1 52434395 52434813 -144760619 - L1_Mus3 LINE L1 -1 6637 6220 6 985 369 0 0 0 chr1 52434969 52435010 -144760422 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 6 985 321 270 0 33 chr1 52435046 52435138 -144760294 - B4 SINE B4 -203 89 1 6 985 232 150 9 65 chr1 52435285 52435392 -144760040 + (CAGAGA)n Simple_repeat Simple_repeat 4 104 0 6 985 352 64 0 0 chr1 52435457 52435504 -144759928 - ORR1A3 LTR MaLR -8 318 272 6 985 7634 90 13 6 chr1 52435509 52436632 -144758800 - L1_Mus4 LINE L1 -7 6629 5500 6 985 5858 137 18 23 chr1 52436611 52437612 -144757820 + L1_Mur1 LINE L1 2816 3811 -2075 6 985 406 92 92 0 chr1 52437603 52437668 -144757764 - L1_Mm LINE L1 -1784 4099 4029 6 985 1640 168 158 11 chr1 52437668 52437704 -144757728 + RMER19B LTR ERVK 467 520 -382 6 985 387 0 0 0 chr1 52437704 52437747 -144757685 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 985 1640 168 158 11 chr1 52437747 52438090 -144757342 + RMER19B LTR ERVK 521 902 0 6 985 737 121 16 0 chr1 52438090 52438214 -144757218 + Lx6 LINE L1 2273 2398 -3482 6 985 1619 44 36 1 chr1 52438215 52438448 -144756984 + IAPLTR2b LTR ERVK 88 383 -2 6 985 13399 172 130 16 chr1 52438482 52438736 -144756696 + Lx6 LINE L1 2464 2733 -3147 6 985 605 14 0 13 chr1 52438736 52438811 -144756621 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 985 13399 182 111 19 chr1 52438811 52442415 -144753017 + Lx6 LINE L1 2734 6680 -780 6 985 746 231 25 51 chr1 52442691 52442887 -144752545 + Lx6 LINE L1 7265 7455 -5 6 985 1043 72 13 7 chr1 52443836 52443991 -144751441 - L1_Mus3 LINE L1 -5 6633 6478 6 985 250 253 75 12 chr1 52444287 52444367 -144751065 + MLT1K LTR MaLR 494 578 -17 6 985 241 250 0 0 chr1 52445000 52445052 -144750380 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 985 630 0 0 0 chr1 52445310 52445380 -144750052 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 985 507 273 108 9 chr1 52447096 52447318 -144748114 + MLT1K-int LTR MaLR 328 571 -918 6 985 408 182 30 22 chr1 52447376 52447611 -144747821 + (CA)n Simple_repeat Simple_repeat 1 237 0 6 985 216 0 0 0 chr1 52448172 52448196 -144747236 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 985 476 254 36 22 chr1 52448237 52448374 -144747058 + ID_B1 SINE B4 85 223 -1 6 985 923 0 9 0 chr1 52448606 52448713 -144746719 + (GA)n Simple_repeat Simple_repeat 2 109 0 6 985 350 300 112 35 chr1 52448766 52449105 -144746327 + L1_Mur3 LINE L1 1605 1969 -3911 6 985 247 329 101 48 chr1 52449272 52449629 -144745803 + L1_Rod LINE L1 2110 2485 -3362 6 985 448 304 86 52 chr1 52450035 52450517 -144744915 + L1M2 LINE L1 2498 3038 -3105 6 985 587 168 35 0 chr1 52450520 52450633 -144744799 - Lx7 LINE L1 -623 7073 6957 6 985 2974 42 3 6 chr1 52450632 52450991 -144744441 + L1Md_F3 LINE L1 5229 5586 -297 6 985 7953 48 15 23 chr1 52450991 52451997 -144743435 + L1Md_F3 LINE L1 5587 6584 0 6 985 1937 203 33 13 chr1 52452002 52452391 -144743041 - Lx7 LINE L1 -750 6946 6550 6 985 2652 216 56 5 chr1 52452763 52453369 -144742063 + Lx9 LINE L1 7007 7643 -1 6 985 582 325 92 64 chr1 52455112 52455566 -144739866 - MT2A LTR ERVL -2 531 65 6 985 186 118 0 0 chr1 52455882 52455916 -144739516 + (A)n Simple_repeat Simple_repeat 1 34 0 6 985 3022 30 88 0 chr1 52455966 52456330 -144739102 + MTA_Mm LTR MaLR 1 396 0 6 985 2766 79 30 9 chr1 52456330 52456764 -144738668 + MTA_Mm-int LTR MaLR 1 443 -655 6 985 36069 35 1 1 chr1 52456764 52462721 -144732711 + L1Md_T LINE L1 1 5589 -297 6 985 9077 9 0 0 chr1 52462721 52463717 -144731715 + L1Md_T LINE L1 5590 6585 0 6 985 4812 45 76 0 chr1 52463729 52464400 -144731032 + MTA_Mm-int LTR MaLR 377 1098 0 6 985 3445 25 5 0 chr1 52464400 52464794 -144730638 + MTA_Mm LTR MaLR 1 396 0 6 985 1062 173 24 24 chr1 52464821 52465034 -144730398 - Lx2B LINE L1 -8 6992 6780 6 985 406 213 1 0 chr1 52465034 52465127 -144730305 - RMER13B LTR ERVK 0 908 777 6 985 1221 224 39 70 chr1 52465132 52465517 -144729915 - RMER13B LTR ERVK -531 377 5 6 985 12218 123 29 32 chr1 52465528 52466969 -144728463 - Lx2 LINE L1 -211 6786 5315 6 985 1132 82 0 7 chr1 52466969 52467105 -144728327 + B1_Mus2 SINE Alu 1 136 -11 6 985 279 0 0 0 chr1 52467105 52467136 -144728296 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 985 12218 142 7 162 chr1 52467146 52467574 -144727858 - Lx2 LINE L1 -563 5314 4889 6 985 4831 35 26 2 chr1 52467574 52468147 -144727285 + LTRIS_Mus LTR ERV1 1 587 0 6 985 12218 142 7 162 chr1 52468147 52468448 -144726984 - Lx2 LINE L1 -989 4888 4604 6 985 771 254 66 12 chr1 52468448 52468691 -144726741 - RMER16 LTR ERVK 0 533 278 6 985 12218 142 7 162 chr1 52468691 52468742 -144726690 - Lx2 LINE L1 -1274 4603 4556 6 985 289 157 115 66 chr1 52468742 52468863 -144726569 - RMER16 LTR ERVK -455 78 1 6 985 12218 142 7 162 chr1 52468863 52470070 -144725362 - Lx2 LINE L1 -989 4555 3407 6 985 13273 153 76 151 chr1 52470068 52471995 -144723437 - L1VL4 LINE L1 -1076 4810 3435 6 985 8178 34 9 3 chr1 52471995 52472970 -144722462 + L1Md_F3 LINE L1 5587 6567 -17 6 985 13273 153 68 99 chr1 52472970 52475470 -144719962 - L1VL4 LINE L1 -2452 3434 740 6 985 252 0 0 0 chr1 52475470 52475498 -144719934 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 985 424 266 42 84 chr1 52475498 52475824 -144719608 - L1VL4 LINE L1 -5800 857 492 6 985 727 305 102 11 chr1 52477149 52477414 -144718018 + B4A SINE B4 1 289 -3 6 985 557 72 12 0 chr1 52477430 52477513 -144717919 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 985 1147 300 107 11 chr1 52478866 52479314 -144716118 - MER68 LTR ERVL -46 517 27 6 985 1183 155 74 10 chr1 52480085 52480287 -144715145 + B3 SINE B2 2 216 0 6 985 4305 192 60 38 chr1 52482920 52483907 -144711525 + Lx9 LINE L1 6629 7637 -7 6 985 3330 41 10 0 chr1 52484261 52484653 -144710779 - MTA_Mm LTR MaLR 0 396 1 6 985 516 66 13 0 chr1 52485869 52485945 -144709487 + B2_Mm1t SINE B2 103 179 -14 6 985 303 101 330 35 chr1 52485977 52486089 -144709343 + B2_Mm2 SINE B2 47 191 -4 6 985 444 279 257 42 chr1 52486309 52486674 -144708758 + RMER20B LTR ERVK 140 589 -38 7 985 828 233 30 20 chr1 52487382 52487579 -144707853 + B3 SINE B2 13 211 -5 7 985 180 0 0 0 chr1 52487582 52487602 -144707830 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 985 231 36 0 0 chr1 52487602 52487629 -144707803 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 985 21 36 0 0 chr1 52487779 52487807 -144707625 + AT_rich Low_complexity Low_complexity 1 28 0 7 985 1375 277 95 5 chr1 52488017 52488387 -144707045 + RMER1A Other Other 101 503 -527 7 985 453 200 10 10 chr1 52488387 52488488 -144706944 - RLTR17 LTR ERVK 0 692 592 7 985 2510 147 36 17 chr1 52488494 52488964 -144706468 - RLTR17 LTR ERVK -213 479 1 7 985 2749 139 35 53 chr1 52488964 52489471 -144705961 + RMER1B Other Other 560 1057 -9 7 985 8436 33 1 1 chr1 52489511 52490571 -144704861 - L1Md_F2 LINE L1 -1 6581 5523 7 985 215 31 0 30 chr1 52493536 52493569 -144701863 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 985 248 0 31 0 chr1 52493630 52493662 -144701770 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 985 5812 105 26 5 chr1 52493697 52494532 -144700900 + Lx2 LINE L1 6144 6996 -1 7 985 468 234 117 0 chr1 52494887 52495058 -144700374 - MER34 LTR ERV1 -39 503 313 7 985 729 262 29 10 chr1 52495079 52495283 -144700149 - MER34 LTR ERV1 -307 235 28 7 985 534 273 84 12 chr1 52495514 52495681 -144699751 + B3A SINE B2 2 180 -18 7 985 420 232 152 6 chr1 52495928 52496106 -144699326 + RMER5 LTR ERV1 331 534 0 7 985 211 106 106 0 chr1 52496541 52496588 -144698844 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 7 985 227 283 20 33 chr1 52496677 52496827 -144698605 + (CAAA)n Simple_repeat Simple_repeat 3 150 0 7 985 428 291 11 11 chr1 52496879 52496913 -144698519 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 985 219 69 0 0 chr1 52496913 52496942 -144698490 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 985 428 291 11 11 chr1 52496942 52497131 -144698301 + (CA)n Simple_repeat Simple_repeat 1 189 0 7 985 350 282 14 14 chr1 52497142 52497286 -144698146 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 985 401 291 5 38 chr1 52497501 52497687 -144697745 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 985 258 331 20 0 chr1 52497772 52497923 -144697509 + (CA)n Simple_repeat Simple_repeat 1 154 0 7 985 244 333 20 0 chr1 52497896 52498046 -144697386 + (CATATA)n Simple_repeat Simple_repeat 5 157 0 7 985 364 302 6 12 chr1 52497987 52498151 -144697281 + (CA)n Simple_repeat Simple_repeat 2 164 0 7 985 277 290 0 10 chr1 52498188 52498289 -144697143 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 7 985 400 301 15 4 chr1 52498363 52498645 -144696787 + (CA)n Simple_repeat Simple_repeat 1 285 0 7 985 1213 251 65 45 chr1 52498682 52499079 -144696353 - MTD LTR MaLR -14 405 1 7 985 314 261 0 11 chr1 52499085 52499178 -144696254 + (CA)n Simple_repeat Simple_repeat 2 93 0 7 985 279 0 0 0 chr1 52499207 52499238 -144696194 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 985 351 0 0 0 chr1 52499441 52499480 -144695952 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 7 985 422 244 214 0 chr1 52499481 52499612 -144695820 - B3A SINE B2 -38 160 2 7 985 282 218 0 18 chr1 52500308 52500364 -144695068 + PB1D10 SINE Alu 56 110 -7 1 985 927 300 28 24 chr1 52500609 52500899 -144694533 + B4A SINE B4 2 292 0 2 985 1206 158 108 8 chr1 52501030 52501279 -144694153 - RMER1B Other Other -10 1056 783 3 985 814 93 0 18 chr1 52501279 52501388 -144694044 - U6 snRNA snRNA 0 107 1 4 985 810 279 51 16 chr1 52501932 52502187 -144693245 - Lx7 LINE L1 -727 6969 6706 5 985 294 331 63 96 chr1 52502461 52502762 -144692670 - B4A SINE B4 0 292 2 6 985 509 300 25 8 chr1 52503054 52503175 -144692257 - ID_B1 SINE B4 -6 218 96 7 985 716 221 69 40 chr1 52503651 52503825 -144691607 - B3 SINE B2 0 216 38 8 985 19156 74 24 4 chr1 52503852 52503907 -144691525 - MusHAL1 LINE L1 0 3353 3307 9 985 1242 61 0 0 chr1 52503907 52504054 -144691378 - B1_Mus1 SINE Alu 0 148 2 1 985 19156 78 24 4 chr1 52504054 52507282 -144688150 - MusHAL1 LINE L1 -47 3306 4 9 985 853 284 65 54 chr1 52507468 52507878 -144687554 + MTD LTR MaLR 6 403 -16 1 985 744 218 0 27 chr1 52508711 52508857 -144686575 - B1_Mur2 SINE Alu -2 147 6 1 985 262 100 33 0 chr1 52508879 52508939 -144686493 + (CAAAAA)n Simple_repeat Simple_repeat 3 64 0 1 985 189 0 0 0 chr1 52508985 52509006 -144686426 + (A)n Simple_repeat Simple_repeat 1 21 0 1 985 444 91 0 0 chr1 52509611 52509677 -144685755 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 985 315 190 52 0 chr1 52509775 52509833 -144685599 - B4 SINE B4 -180 112 52 1 985 243 320 39 0 chr1 52512229 52512307 -144683125 + ID4_ SINE ID 1 81 -2 1 985 237 174 25 127 chr1 52512650 52512729 -144682703 + L1MA8 LINE L1 6213 6283 -8 1 985 259 237 34 23 chr1 52513876 52513985 -144681447 + B1_Mur1 SINE Alu 42 148 -1 1 985 21 0 0 0 chr1 52514383 52514404 -144681028 + AT_rich Low_complexity Low_complexity 1 21 0 2 985 450 0 0 0 chr1 52514471 52514521 -144680911 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 985 204 111 0 0 chr1 52514700 52514736 -144680696 + (T)n Simple_repeat Simple_repeat 1 36 0 2 985 475 288 0 16 chr1 52516319 52516446 -144678986 + B1F1 SINE Alu 24 148 -1 2 985 198 150 0 0 chr1 52516446 52516486 -144678946 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 2 985 708 210 293 0 chr1 52516655 52516822 -144678610 - B3 SINE B2 0 216 1 2 985 234 0 0 0 chr1 52517113 52517139 -144678293 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 985 853 107 288 26 chr1 52517585 52517738 -144677694 - B2_Mm2 SINE B2 -1 194 2 2 985 266 144 147 49 chr1 52517766 52517868 -144677564 + Lx8 LINE L1 7362 7473 0 2 985 204 143 0 28 chr1 52519050 52519086 -144676346 + GA-rich Low_complexity Low_complexity 2 36 0 2 985 792 310 77 78 chr1 52519828 52520549 -144674883 + Lx8 LINE L1 5178 5902 -1571 3 985 522 0 0 0 chr1 52520581 52520639 -144674793 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 985 239 275 97 32 chr1 52520966 52521090 -144674342 + L2a LINE L2 3295 3426 0 3 985 221 186 43 0 chr1 52521275 52521331 -144674101 + ID2 SINE ID 23 83 0 3 985 231 157 19 19 chr1 52522096 52522148 -144673284 + GA-rich Low_complexity Low_complexity 3 54 0 3 985 601 301 35 35 chr1 52522951 52523273 -144672159 + B4 SINE B4 2 288 -4 3 985 429 229 29 0 chr1 52524284 52524389 -144671043 - URR1A DNA MER1_type -50 176 69 3 985 25 31 0 0 chr1 52524486 52524518 -144670914 + AT_rich Low_complexity Low_complexity 1 32 0 3 985 410 222 108 25 chr1 52525392 52525512 -144669920 - B1F SINE Alu -8 141 12 3 985 205 410 35 58 chr1 52526104 52526275 -144669157 + MIRb SINE MIR 81 247 -21 3 985 197 328 85 17 chr1 52527299 52527417 -144668015 + MIRc SINE MIR 80 205 -63 4 985 184 273 129 53 chr1 52528977 52529120 -144666312 + MIRb SINE MIR 21 194 -74 4 985 893 158 20 0 chr1 52531410 52531556 -144663876 + B1_Mur3 SINE Alu 1 149 0 4 985 5957 130 4 1 chr1 52531620 52533046 -144662386 + L1_Mus2 LINE L1 684 2113 -3770 4 985 7438 84 3 12 chr1 52533043 52534382 -144661050 + L1_Mus2 LINE L1 5239 6566 0 4 985 972 233 30 0 chr1 52535473 52535675 -144659757 + B3 SINE B2 8 215 -1 4 985 1260 36 0 0 chr1 52535781 52535919 -144659513 + B1_Mus2 SINE Alu 2 139 -8 4 985 21 0 0 0 chr1 52536749 52536770 -144658662 + AT_rich Low_complexity Low_complexity 1 21 0 4 985 1515 122 40 20 chr1 52536839 52537089 -144658343 - RMER19B LTR ERVK 0 902 648 4 985 268 297 54 0 chr1 52537415 52537526 -144657906 + L1MA4 LINE L1 6138 6254 -46 4 985 282 263 76 42 chr1 52538524 52538643 -144656789 + MIRb SINE MIR 6 128 -140 4 985 21 0 0 0 chr1 52539154 52539175 -144656257 + AT_rich Low_complexity Low_complexity 1 21 0 5 985 554 278 65 32 chr1 52539180 52539366 -144656066 - B3A SINE B2 -3 195 4 5 985 811 246 46 80 chr1 52539538 52539789 -144655643 + MTE2b LTR MaLR 2 222 -157 5 985 23 33 0 0 chr1 52539903 52539933 -144655499 + AT_rich Low_complexity Low_complexity 1 30 0 5 985 1980 163 40 19 chr1 52540191 52540566 -144654866 + ORR1B1 LTR MaLR 3 385 -9 5 985 5667 94 60 8 chr1 52541173 52541953 -144653479 - Lx LINE L1 0 6654 5834 5 985 1048 151 21 26 chr1 52543099 52543289 -144652143 + B2_Mm2 SINE B2 1 189 -6 5 985 32 0 0 0 chr1 52543646 52543678 -144651754 + AT_rich Low_complexity Low_complexity 1 32 0 5 985 618 214 0 25 chr1 52543685 52543805 -144651627 + RSINE1 SINE B4 9 125 -40 5 985 418 73 174 103 chr1 52544640 52544739 -144650693 - PB1D9 SINE Alu -1 119 13 5 985 353 279 168 36 chr1 52545096 52545263 -144650169 + B3A SINE B2 10 198 0 6 985 183 167 0 0 chr1 52546034 52546076 -144649356 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 985 500 122 16 16 chr1 52546623 52546748 -144648684 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 985 21 0 0 0 chr1 52549334 52549355 -144646077 + AT_rich Low_complexity Low_complexity 1 21 0 6 985 2230 247 89 18 chr1 52550562 52551222 -144644210 - RCHARR1 DNA MER1_type -267 707 1 6 985 29 60 0 0 chr1 52551293 52551343 -144644089 + AT_rich Low_complexity Low_complexity 1 50 0 6 985 932 143 71 14 chr1 52551690 52551881 -144643551 + B3 SINE B2 1 194 -1 6 985 242 289 93 50 chr1 52551989 52552171 -144643261 + Charlie23a DNA MER1_type 142 331 -8 6 985 266 197 38 50 chr1 52554117 52554197 -144641235 - ID4_ SINE ID -3 80 2 6 985 405 123 0 0 chr1 52555788 52555853 -144639579 + (A)n Simple_repeat Simple_repeat 1 65 0 6 985 21 95 0 0 chr1 52556962 52557025 -144638407 + GC_rich Low_complexity Low_complexity 1 63 0 7 985 36 110 0 0 chr1 52557103 52557258 -144638174 + GC_rich Low_complexity Low_complexity 1 155 0 7 985 201 159 0 0 chr1 52557266 52557310 -144638122 + CT-rich Low_complexity Low_complexity 1 44 0 7 985 27 0 0 0 chr1 52557317 52557344 -144638088 + GC_rich Low_complexity Low_complexity 1 27 0 7 985 30 45 0 0 chr1 52557420 52557464 -144637968 + GC_rich Low_complexity Low_complexity 1 44 0 7 986 575 105 19 56 chr1 52561187 52561349 -144634083 + C-rich Low_complexity Low_complexity 6 161 0 7 986 204 40 0 0 chr1 52561370 52561395 -144634037 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 986 1095 193 70 35 chr1 52561395 52561548 -144633884 - L1_Mur3 LINE L1 -3813 2067 1905 7 986 1922 132 67 70 chr1 52561548 52561875 -144633557 + ORR1A3 LTR MaLR 1 326 0 7 986 1095 193 70 35 chr1 52561875 52562005 -144633427 - L1_Mur3 LINE L1 -3976 1904 1774 7 986 234 196 78 0 chr1 52562020 52562071 -144633361 + L2a LINE L2 3372 3426 0 7 986 271 60 40 0 chr1 52562158 52562208 -144633224 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 8 986 1230 68 0 0 chr1 52562208 52562354 -144633078 - B1_Mus1 SINE Alu 0 148 3 8 986 814 230 141 26 chr1 52563165 52563469 -144631963 + MER113 DNA MER1_type 72 410 -111 8 986 1080 254 108 38 chr1 52563491 52563917 -144631515 + L1MA8 LINE L1 5534 5989 -302 8 986 2424 132 53 0 chr1 52563926 52564304 -144631128 - MT2B2 LTR ERVL -4 580 183 8 986 14208 229 25 35 chr1 52564450 52568125 -144627307 - MYSERV6-int LTR ERVK -4803 4156 517 8 986 21 0 0 0 chr1 52568382 52568403 -144627029 + AT_rich Low_complexity Low_complexity 1 21 0 8 986 856 234 94 45 chr1 52569009 52569340 -144626092 - RLTR15 LTR ERVK -12 347 1 8 986 668 133 0 0 chr1 52569340 52569444 -144625988 + ORR1B1 LTR MaLR 291 394 0 8 986 440 272 11 0 chr1 52569444 52569536 -144625896 + B3 SINE B2 38 130 -86 8 986 1308 48 0 0 chr1 52570079 52570226 -144625206 + B1_Mm SINE Alu 1 147 0 9 986 306 67 0 0 chr1 52572016 52572061 -144623371 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 9 986 361 305 54 62 chr1 52572724 52572836 -144622596 - PB1 SINE Alu 0 120 10 9 986 934 151 168 25 chr1 52572878 52573075 -144622357 + URR1B DNA MER1_type 1 225 0 9 986 2143 133 15 58 chr1 52574267 52574609 -144620823 - ORR1A2 LTR MaLR 0 327 1 9 986 7453 145 67 100 chr1 52574609 52576313 -144619119 - ORR1A2-int LTR MaLR 0 1963 317 9 986 675 94 0 0 chr1 52577533 52577629 -144617803 + (TC)n Simple_repeat Simple_repeat 1 96 0 9 986 363 44 0 0 chr1 52578657 52578702 -144616730 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 986 25 31 0 0 chr1 52578885 52578917 -144616515 + AT_rich Low_complexity Low_complexity 1 32 0 9 986 195 42 0 0 chr1 52579586 52579610 -144615822 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 986 564 326 83 23 chr1 52580129 52580393 -144615039 - B4A SINE B4 -6 286 7 9 986 709 255 160 10 chr1 52580459 52580665 -144614767 - B4 SINE B4 -14 278 42 1 986 189 0 0 0 chr1 52580753 52580774 -144614658 + (GTTTG)n Simple_repeat Simple_repeat 3 23 0 1 986 216 86 0 0 chr1 52580793 52580828 -144614604 + (A)n Simple_repeat Simple_repeat 1 35 0 1 986 959 292 53 35 chr1 52581617 52581958 -144613474 + MLT1A0 LTR MaLR 19 365 0 1 986 1821 226 62 14 chr1 52582527 52583043 -144612389 + L1_Rod LINE L1 453 946 -6662 1 986 1839 166 27 19 chr1 52583044 52583473 -144611959 + L1_Rod LINE L1 1175 1607 -4240 1 986 832 219 81 31 chr1 52583473 52583709 -144611723 - LTRIS4 LTR ERV1 -116 512 274 1 986 1416 181 39 58 chr1 52583848 52584212 -144611220 + L1_Rod LINE L1 1604 1960 -3887 1 986 390 273 137 135 chr1 52584235 52584599 -144610833 + RLTR9A LTR ERVK 4 368 0 1 986 6246 208 99 45 chr1 52584600 52586462 -144608970 + L1_Rod LINE L1 1955 3918 -1929 1 986 887 193 116 5 chr1 52586459 52586683 -144608749 + Lx9 LINE L1 7342 7590 -54 1 986 29 47 0 0 chr1 52586718 52586761 -144608671 + AT_rich Low_complexity Low_complexity 1 43 0 1 986 497 197 20 108 chr1 52586801 52586949 -144608483 + ORR1D1 LTR MaLR 1 135 -239 1 986 1173 196 107 19 chr1 52586940 52587236 -144608196 + ORR1D1 LTR MaLR 66 374 0 1 986 238 244 73 0 chr1 52587245 52587327 -144608105 - L1MB5 LINE L1 -93 6085 5998 1 986 24 32 0 0 chr1 52587441 52587472 -144607960 + AT_rich Low_complexity Low_complexity 1 31 0 1 986 2958 238 57 12 chr1 52587473 52588206 -144607226 - Lx5 LINE L1 -5 7045 6280 1 986 813 166 12 6 chr1 52588208 52588372 -144607060 - L1_Mur2 LINE L1 -1200 4677 4513 1 986 194 91 30 0 chr1 52588375 52588408 -144607024 + (TCTCCC)n Simple_repeat Simple_repeat 4 37 0 1 986 417 310 175 54 chr1 52588410 52588707 -144606725 - MTA_Mm LTR MaLR -52 344 12 1 986 1079 110 12 0 chr1 52588723 52588896 -144606536 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 1 986 690 35 0 0 chr1 52588896 52588980 -144606452 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 1 986 14489 82 7 5 chr1 52588988 52591438 -144603994 - MusHAL1 LINE L1 -727 2626 173 1 986 416 254 107 8 chr1 52591429 52591560 -144603872 - L1MB5 LINE L1 -348 5826 5683 1 986 634 254 111 30 chr1 52591556 52591791 -144603641 - L1MB5 LINE L1 -610 5568 5315 1 986 695 253 41 41 chr1 52591794 52591988 -144603444 - B3A SINE B2 0 198 5 1 986 559 265 185 28 chr1 52592039 52592437 -144602995 - L1MB5 LINE L1 -1712 4434 3977 1 986 569 14 14 0 chr1 52592585 52592655 -144602777 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 986 262 107 36 0 chr1 52592686 52592742 -144602690 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1 986 217 240 0 0 chr1 52593056 52593106 -144602326 + (ATG)n Simple_repeat Simple_repeat 1 50 0 1 986 234 0 0 0 chr1 52593718 52593744 -144601688 + (A)n Simple_repeat Simple_repeat 1 26 0 1 986 2379 211 47 32 chr1 52594862 52595302 -144600130 + RLTR20A LTR ERVK 1 431 -110 1 986 402 21 0 0 chr1 52595302 52595349 -144600083 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 986 2379 211 47 32 chr1 52595349 52595438 -144599994 + RLTR20A LTR ERVK 432 537 -4 1 986 785 238 150 8 chr1 52595877 52596123 -144599309 + B4A SINE B4 2 282 -10 1 986 24 53 0 0 chr1 52596357 52596395 -144599037 + AT_rich Low_complexity Low_complexity 1 38 0 1 986 275 257 14 14 chr1 52596496 52596567 -144598865 - MLT1A1 LTR MaLR 0 408 338 1 986 11548 132 8 3 chr1 52596913 52599640 -144595792 - Lx2 LINE L1 -242 6755 4006 1 986 380 274 48 57 chr1 52600218 52600342 -144595090 - MLT1A1 LTR MaLR 0 408 286 1 986 269 370 20 0 chr1 52600444 52600544 -144594888 - MLT1A1 LTR MaLR -271 137 36 1 986 404 191 0 11 chr1 52600681 52600771 -144594661 + CT-rich Low_complexity Low_complexity 2 90 0 1 986 180 176 0 0 chr1 52600779 52600813 -144594619 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 986 219 139 0 0 chr1 52600891 52600927 -144594505 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 1 986 409 335 219 5 chr1 52601258 52601449 -144593983 + B4A SINE B4 1 232 -60 1 986 396 291 0 25 chr1 52601449 52601530 -144593902 + RSINE1 SINE B4 4 82 -83 1 986 1660 189 6 55 chr1 52601533 52601863 -144593569 + RLTR25B LTR ERVK 15 328 -700 1 986 575 62 12 0 chr1 52601930 52602010 -144593422 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 1 986 1088 131 6 11 chr1 52602014 52602192 -144593240 + RLTR25B LTR ERVK 346 522 -581 1 986 1326 160 58 17 chr1 52602221 52602462 -144592970 + MT2B LTR ERVL 35 285 -316 1 986 852 231 34 66 chr1 52602357 52602677 -144592755 + ORR1A3-int LTR MaLR 656 965 -998 1 986 765 213 316 78 chr1 52602474 52602948 -144592484 + RLTR25B LTR ERVK 442 1028 0 1 986 351 326 21 0 chr1 52602948 52603020 -144592412 + RSINE1 SINE B4 75 148 -17 1 986 21 0 0 0 chr1 52603206 52603227 -144592205 + AT_rich Low_complexity Low_complexity 1 21 0 1 986 311 219 380 13 chr1 52603477 52603714 -144591718 + Lx6 LINE L1 7111 7434 -26 1 986 235 220 16 33 chr1 52604108 52604169 -144591263 + GA-rich Low_complexity Low_complexity 2 61 0 1 986 27 29 0 0 chr1 52604774 52604808 -144590624 + AT_rich Low_complexity Low_complexity 1 34 0 1 986 271 245 46 93 chr1 52605174 52605282 -144590150 + MLT1K LTR MaLR 165 267 -328 1 986 511 308 90 26 chr1 52605476 52605709 -144589723 + MLT2C2 LTR ERVL 90 337 -127 1 986 230 183 33 0 chr1 52606077 52606137 -144589295 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1 986 229 278 19 0 chr1 52606785 52606839 -144588593 + MER20 DNA MER1_type 1 55 -164 1 986 201 139 0 0 chr1 52606951 52606994 -144588438 + (G)n Simple_repeat Simple_repeat 1 43 0 1 986 219 25 0 70 chr1 52607550 52607593 -144587839 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 986 21 57 0 0 chr1 52608260 52608295 -144587137 + AT_rich Low_complexity Low_complexity 1 35 0 1 986 25 0 0 0 chr1 52608400 52608425 -144587007 + AT_rich Low_complexity Low_complexity 1 25 0 1 986 401 315 26 46 chr1 52608669 52608822 -144586610 + MER20 DNA MER1_type 70 219 0 1 986 435 68 0 0 chr1 52608836 52608895 -144586537 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 986 242 304 8 66 chr1 52608955 52609080 -144586352 - ID4_ SINE ID -34 118 1 1 986 239 279 57 29 chr1 52609085 52609155 -144586277 - PB1D7 SINE Alu -8 112 41 1 986 2834 75 93 3 chr1 52609954 52610340 -144585092 + BGLII LTR ERVK 1 421 0 1 986 716 307 24 48 chr1 52610415 52610709 -144584723 + B4A SINE B4 2 288 -4 1 986 345 24 0 0 chr1 52610767 52610809 -144584623 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 986 195 260 0 0 chr1 52612175 52612225 -144583207 - L2b LINE L2 -4 3371 3322 1 986 471 284 30 92 chr1 52614038 52614341 -144581091 + B4A SINE B4 3 286 -6 1 986 225 0 0 0 chr1 52614352 52614377 -144581055 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 986 4868 166 47 59 chr1 52614572 52615646 -144579786 + MYSERV6-int LTR ERVK 7899 8959 0 1 986 668 177 161 54 chr1 52615659 52615957 -144579475 + RLTR15 LTR ERVK 14 343 -16 1 986 607 260 65 71 chr1 52616302 52616596 -144578836 - B4A SINE B4 0 292 1 1 986 342 207 183 0 chr1 52616988 52617070 -144578362 - B1_Mur1 SINE Alu -3 146 21 1 986 1180 55 0 7 chr1 52617114 52617262 -144578170 - B1_Mus1 SINE Alu 0 148 2 1 986 3984 75 11 6 chr1 52618143 52618664 -144576768 + L1_Mus4 LINE L1 6112 6635 -1 1 986 274 333 58 0 chr1 52618717 52618873 -144576559 - MER68-int LTR ERVL -1073 1917 1753 1 986 448 298 97 19 chr1 52619036 52619303 -144576129 + B4A SINE B4 3 290 -2 1 986 222 118 0 0 chr1 52619315 52619349 -144576083 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 986 453 36 0 0 chr1 52619350 52619405 -144576027 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 986 353 306 8 24 chr1 52619619 52619743 -144575689 - HERVL40-int LTR ERVL -2015 3515 3394 1 986 423 328 15 50 chr1 52619846 52620048 -144575384 - HERVL40-int LTR ERVL -2289 3241 3047 1 986 575 332 35 93 chr1 52620059 52620490 -144574942 + MTD LTR MaLR 10 415 -4 1 986 761 366 46 57 chr1 52620581 52620933 -144574499 - HERVL40-int LTR ERVL -2652 2878 2530 1 986 1677 144 46 166 chr1 52620933 52621350 -144574082 + ORR1B2 LTR MaLR 1 367 0 1 986 761 366 46 57 chr1 52621350 52621799 -144573633 - HERVL40-int LTR ERVL -3001 2529 2086 1 986 528 16 0 0 chr1 52622383 52622444 -144572988 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 986 299 275 181 0 chr1 52622445 52622583 -144572849 - HERVL40-int LTR ERVL -4798 732 570 1 986 231 231 0 19 chr1 52622595 52622648 -144572784 + GA-rich Low_complexity Low_complexity 4 55 0 1 986 484 284 86 27 chr1 52622946 52623167 -144572265 - HERVL40-int LTR ERVL -5285 245 12 1 986 596 341 59 59 chr1 52623205 52623422 -144572010 - LTR40b LTR ERVL -52 410 194 1 986 1628 183 78 42 chr1 52623422 52623782 -144571650 - ORR1D1 LTR MaLR -1 373 1 1 986 596 341 59 59 chr1 52623782 52623969 -144571463 - LTR40b LTR ERVL -269 193 6 1 986 1973 190 5 24 chr1 52624019 52624277 -144571155 - ORR1C1 LTR MaLR 0 378 125 1 986 3205 61 2 5 chr1 52624277 52624674 -144570758 - MTA_Mm LTR MaLR 0 396 1 1 986 1973 190 5 24 chr1 52624674 52624797 -144570635 - ORR1C1 LTR MaLR -254 124 4 1 986 988 139 18 18 chr1 52624983 52625151 -144570281 - Lx2B LINE L1 -1200 5800 5633 1 986 221 354 0 0 chr1 52625317 52625396 -144570036 + C-rich Low_complexity Low_complexity 2 80 0 1 986 2293 124 0 0 chr1 52625470 52625793 -144569639 - Lx2B LINE L1 -245 5638 5316 1 986 1551 198 61 20 chr1 52625789 52626134 -144569298 + Lx3C LINE L1 6616 6974 -2 1 986 1698 132 15 154 chr1 52626257 52626659 -144568773 + ORR1B1 LTR MaLR 41 386 -8 1 986 373 327 9 0 chr1 52626696 52626806 -144568626 - PB1D10 SINE Alu -6 111 1 1 986 214 51 50 25 chr1 52626849 52626889 -144568543 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 986 615 209 12 25 chr1 52627046 52627186 -144568246 - B1_Mur2 SINE Alu 0 149 1 1 986 405 0 0 0 chr1 52627190 52627235 -144568197 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 986 551 284 125 5 chr1 52627237 52627421 -144568011 + B3 SINE B2 4 209 -7 1 986 821 306 34 64 chr1 52628070 52628510 -144566922 + MTE2b LTR MaLR 1 419 0 1 986 919 248 67 9 chr1 52630418 52630723 -144564709 + L1M2 LINE L1 5337 5670 -504 1 986 3127 227 98 42 chr1 52630729 52631636 -144563796 - Lx7 LINE L1 -780 6916 5959 1 986 477 189 31 23 chr1 52631692 52631822 -144563610 + MTD LTR MaLR 267 419 0 1 986 284 336 32 8 chr1 52632503 52632626 -144562806 - Tigger15a DNA TcMar -575 140 15 1 986 24 0 0 0 chr1 52633281 52633305 -144562127 + AT_rich Low_complexity Low_complexity 1 24 0 1 986 212 404 0 0 chr1 52634438 52634532 -144560900 - L3 LINE CR1 -90 4399 4306 1 986 336 175 0 0 chr1 52635049 52635112 -144560320 + CT-rich Low_complexity Low_complexity 3 65 0 1 986 429 54 0 0 chr1 52636026 52636082 -144559350 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 986 272 263 0 0 chr1 52636084 52636141 -144559291 - RSINE1 SINE B4 -106 59 3 1 986 360 0 0 0 chr1 52636294 52636334 -144559098 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 1 986 3092 133 21 34 chr1 52636675 52637243 -144558189 - RLTR31_Mm LTR ERVK 0 561 1 2 986 906 125 0 37 chr1 52637657 52637980 -144557452 + CT-rich Low_complexity Low_complexity 1 310 0 2 986 320 315 27 0 chr1 52638177 52638288 -144557144 + PB1 SINE Alu 12 125 -2 2 986 1642 22 0 0 chr1 52638902 52639084 -144556348 - B2_Mm1a SINE B2 -11 182 1 2 986 357 275 36 18 chr1 52639600 52639711 -144555721 - Tigger7 DNA MER2_type -23 2468 2356 2 986 761 301 134 6 chr1 52639715 52640029 -144555403 - Tigger7 DNA MER2_type -2136 355 2 2 986 294 329 82 0 chr1 52640277 52640423 -144555009 - MLT1I LTR MaLR -253 158 1 2 986 394 301 57 66 chr1 52640683 52640911 -144554521 + L1M5 LINE L1 5552 5777 -347 2 986 386 159 0 11 chr1 52641901 52641990 -144553442 + GA-rich Low_complexity Low_complexity 2 89 0 2 986 214 182 0 0 chr1 52642314 52642358 -144553074 + T-rich Low_complexity Low_complexity 1 44 0 2 986 293 0 27 0 chr1 52642508 52642545 -144552887 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 986 235 288 40 14 chr1 52643268 52643342 -144552090 - ID2 SINE ID -4 79 4 2 986 454 351 11 23 chr1 52643342 52643513 -144551919 + B4A SINE B4 102 270 -22 2 986 213 283 17 0 chr1 52643548 52643608 -144551824 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 986 272 359 49 34 chr1 52644060 52644265 -144551167 + MLT1J LTR MaLR 9 216 -296 2 986 474 261 8 0 chr1 52644567 52644697 -144550735 - MER2 DNA MER2_type -41 304 174 2 986 820 255 36 5 chr1 52644841 52645034 -144550398 + B4A SINE B4 1 199 -93 2 986 807 232 86 20 chr1 52645038 52645236 -144550196 + MTD LTR MaLR 1 211 -208 2 986 858 237 14 45 chr1 52645238 52645459 -144549973 + B3 SINE B2 2 215 -1 2 986 610 263 63 1 chr1 52645483 52645666 -144549766 + MTD LTR MaLR 224 405 -14 2 986 847 252 90 32 chr1 52645668 52646062 -144549370 + MTD-int LTR MaLR 1 510 -748 2 986 428 275 41 115 chr1 52646062 52646203 -144549229 + MTD LTR MaLR 197 319 -102 2 986 216 0 0 0 chr1 52646203 52646227 -144549205 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 986 428 275 41 115 chr1 52646227 52646303 -144549129 + MTD LTR MaLR 320 398 -23 2 986 225 290 122 72 chr1 52646325 52646645 -144548787 - HAL1 LINE L1 -1014 1493 1158 2 986 2121 133 65 54 chr1 52646709 52647171 -144548261 + IAPLTR2_Mm LTR ERVK 1 467 -8 2 986 5263 56 6 15 chr1 52647172 52647840 -144547592 + IAPEz-int LTR ERVK 1 662 -5819 2 986 454 66 0 32 chr1 52647840 52647903 -144547529 + IAPEz-int LTR ERVK 1359 1419 -5062 2 986 1865 111 4 4 chr1 52647892 52648154 -144547278 + IAPEz-int LTR ERVK 2236 2497 -5183 2 986 922 96 24 0 chr1 52648149 52648274 -144547158 + IAPEz-int LTR ERVK 4783 4910 -2770 2 986 21339 16 2 2 chr1 52648276 52650634 -144544798 + IAPEz-int LTR ERVK 4123 6481 0 2 986 2121 135 65 54 chr1 52650634 52651097 -144544335 + IAPLTR2_Mm LTR ERVK 1 468 -7 2 986 496 304 6 58 chr1 52651143 52651314 -144544118 - RSINE1 SINE B4 -2 163 2 2 986 312 210 0 0 chr1 52651659 52651740 -144543692 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 986 393 286 159 24 chr1 52651967 52652257 -144543175 - MLT1B LTR MaLR -60 330 2 2 986 396 281 88 7 chr1 52652340 52652476 -144542956 + LTR16A LTR ERVL 303 449 -2 2 986 270 213 5 41 chr1 52652476 52652558 -144542874 - Charlie9 DNA MER1_type -2682 75 1 2 986 234 0 0 0 chr1 52652983 52653009 -144542423 + (T)n Simple_repeat Simple_repeat 1 26 0 2 986 308 247 37 0 chr1 52653897 52653978 -144541454 + B4A SINE B4 1 84 -208 2 986 275 242 44 20 chr1 52654040 52654140 -144541292 + RSINE1 SINE B4 78 163 -2 2 986 192 77 0 0 chr1 52654499 52654525 -144540907 + (A)n Simple_repeat Simple_repeat 1 26 0 2 986 445 290 32 0 chr1 52655484 52655608 -144539824 + ID_B1 SINE B4 86 213 -11 2 986 289 342 85 46 chr1 52656228 52656381 -144539051 + B4A SINE B4 50 208 -84 2 986 585 254 172 40 chr1 52656533 52656828 -144538604 + ORR1D2 LTR MaLR 1 359 -11 2 986 1373 86 32 0 chr1 52657152 52657339 -144538093 - B2_Mm2 SINE B2 -2 193 1 2 986 3364 57 5 12 chr1 52657544 52657972 -144537460 - L1_Mus1 LINE L1 0 6567 6143 2 986 3421 98 0 0 chr1 52657972 52658433 -144536999 - L1_Mm LINE L1 -11 5872 5412 2 986 1961 202 11 55 chr1 52659131 52659491 -144535941 + MTC LTR MaLR 1 347 -74 2 986 3460 13 16 0 chr1 52659491 52659879 -144535553 - MTA_Mm LTR MaLR -2 394 1 2 986 1961 202 11 55 chr1 52659879 52659958 -144535474 + MTC LTR MaLR 348 421 0 2 986 232 146 44 11 chr1 52660041 52660131 -144535301 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 986 1543 181 70 28 chr1 52660494 52660853 -144534579 + ORR1D1 LTR MaLR 1 374 0 2 986 504 294 0 137 chr1 52660957 52661162 -144534270 - B4A SINE B4 -23 269 93 2 986 261 299 78 0 chr1 52661229 52661306 -144534126 - B4A SINE B4 -208 84 2 2 986 1977 131 13 13 chr1 52661497 52661815 -144533617 + ORR1A2 LTR MaLR 1 318 -8 2 986 10436 138 74 19 chr1 52661819 52663680 -144531752 + ORR1A2-int LTR MaLR 1 1963 0 2 986 2059 151 25 0 chr1 52663680 52663999 -144531433 + ORR1A2 LTR MaLR 1 327 0 2 986 239 0 0 31 chr1 52664056 52664088 -144531344 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 986 252 292 67 0 chr1 52664821 52664910 -144530522 - B1F SINE Alu -34 115 21 2 986 1854 224 30 25 chr1 52665289 52665761 -144529671 + RMER19C LTR ERVK 138 611 0 2 986 545 294 55 21 chr1 52665761 52666148 -144529284 + RMER15 LTR ERVL 46 575 0 2 986 3148 54 26 3 chr1 52666205 52666596 -144528836 - MTB LTR MaLR 0 400 1 2 986 294 371 0 14 chr1 52667448 52667590 -144527842 + Lx7 LINE L1 7069 7208 -488 2 986 210 159 14 28 chr1 52667640 52667711 -144527721 + T-rich Low_complexity Low_complexity 3 72 0 2 986 929 161 194 0 chr1 52667712 52667892 -144527540 - B3 SINE B2 0 216 2 2 986 334 263 40 0 chr1 52668430 52668529 -144526903 + MLT1A0 LTR MaLR 262 364 -1 2 986 1128 76 0 14 chr1 52668745 52668892 -144526540 + B1_Mus2 SINE Alu 2 146 -1 2 986 20065 80 10 8 chr1 52668916 52672459 -144522973 + L1VL4 LINE L1 1 3559 0 2 986 569 306 84 56 chr1 52672459 52672960 -144522472 + L1MC5 LINE L1 6687 7201 -760 2 986 1472 252 13 32 chr1 52673016 52673389 -144522043 + MTE2b LTR MaLR 7 372 -7 2 986 248 325 0 25 chr1 52673981 52674060 -144521372 + ID4_ SINE ID 3 79 -4 2 986 306 36 54 18 chr1 52674064 52674120 -144521312 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 2 986 259 266 12 12 chr1 52674351 52674431 -144521001 + ID SINE ID 5 84 -140 2 986 219 274 32 0 chr1 52674473 52674535 -144520897 + PB1D10 SINE Alu 34 97 -20 2 986 195 42 0 0 chr1 52674924 52674948 -144520484 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 2 986 315 0 0 0 chr1 52676530 52676565 -144518867 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 986 405 0 0 0 chr1 52677229 52677274 -144518158 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 986 274 267 37 17 chr1 52678077 52678216 -144517216 + MTEb LTR MaLR 202 361 -18 2 986 3422 28 2 12 chr1 52678387 52678787 -144516645 - MTA_Mm LTR MaLR 0 396 1 2 986 8909 49 7 3 chr1 52678787 52679880 -144515552 - MTA_Mm-int LTR MaLR 0 1098 1 2 986 3407 25 2 15 chr1 52679880 52680281 -144515151 - MTA_Mm LTR MaLR 0 396 1 2 986 3627 174 105 58 chr1 52680778 52681636 -144513796 - RMER19B LTR ERVK -4 898 1 2 986 355 306 172 0 chr1 52681842 52681999 -144513433 - MLT1F2 LTR MaLR 0 560 377 2 986 857 117 14 20 chr1 52681999 52682147 -144513285 - RLTR14 LTR ERV1 -235 147 1 2 986 1239 280 107 30 chr1 52682439 52683127 -144512305 - L1MA4 LINE L1 -1535 6109 5409 2 986 273 29 0 0 chr1 52683158 52683192 -144512240 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 986 1130 206 122 139 chr1 52683212 52683374 -144512058 - MT2A LTR ERVL -72 461 253 2 986 1367 72 28 0 chr1 52683374 52683555 -144511877 - B2_Mm1t SINE B2 -7 186 1 2 986 1130 206 122 139 chr1 52683555 52683861 -144511571 - MT2A LTR ERVL -281 252 1 2 986 598 159 122 14 chr1 52683861 52684008 -144511424 - MERVL_2A-int LTR ERVL 0 5761 5599 2 986 4386 179 66 24 chr1 52684129 52684998 -144510434 - MERVL_2A-int LTR ERVL -4856 905 1 2 986 737 240 179 45 chr1 52684998 52685202 -144510230 - MT2A LTR ERVL 0 584 206 2 986 3221 42 25 2 chr1 52685202 52685604 -144509828 + RLTR10A LTR ERVK 1 411 0 2 986 737 226 145 4 chr1 52685604 52685783 -144509649 - MT2A LTR ERVL -328 205 2 2 986 273 266 0 0 chr1 52685797 52685876 -144509556 - L1MA4 LINE L1 -915 5382 5304 2 986 216 0 0 0 chr1 52685878 52685902 -144509530 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 986 274 321 71 0 chr1 52686443 52686555 -144508877 - ID_B1 SINE B4 -19 205 86 2 986 827 234 75 10 chr1 52686895 52687094 -144508338 - B3 SINE B2 -4 212 1 2 986 400 317 24 0 chr1 52688743 52688866 -144506566 - B1F2 SINE Alu -23 126 1 2 986 252 0 0 0 chr1 52689230 52689258 -144506174 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 986 305 292 18 36 chr1 52689355 52689465 -144505967 - Tigger7 DNA MER2_type -2379 112 5 2 986 231 135 0 0 chr1 52689490 52689527 -144505905 + L3 LINE CR1 4443 4479 -10 2 986 226 67 22 22 chr1 52690156 52690202 -144505230 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 986 418 252 10 0 chr1 52690608 52690707 -144504725 - MER44D DNA MER2_type -589 116 17 2 987 234 309 24 79 chr1 52691668 52691833 -144503599 - L2 LINE L2 -578 2841 2686 2 987 1466 78 16 0 chr1 52692467 52692658 -144502774 - B2_Mm2 SINE B2 0 195 2 2 987 5082 117 68 7 chr1 52694394 52695232 -144500200 - RMER17D LTR ERVK 0 889 1 2 987 813 116 150 7 chr1 52695414 52695561 -144499871 + URR1B DNA MER1_type 1 168 -57 2 987 2299 162 7 31 chr1 52695565 52695980 -144499452 - MTB_Mm LTR MaLR -1 406 2 2 987 2303 201 130 29 chr1 52696387 52697008 -144498424 + Lx7 LINE L1 7009 7692 -4 2 987 180 0 0 0 chr1 52698722 52698742 -144496690 + (TGGA)n Simple_repeat Simple_repeat 2 21 0 2 987 293 197 104 13 chr1 52699670 52699747 -144495685 - MER5A1 DNA MER1_type -7 159 76 2 987 286 319 0 0 chr1 52700757 52700829 -144494603 - ID4_ SINE ID -11 72 1 2 987 595 161 283 29 chr1 52701030 52701203 -144494229 - Lx2B LINE L1 -5 6995 6779 2 987 594 269 56 28 chr1 52701696 52701876 -144493556 + B3A SINE B2 2 186 -12 2 987 246 123 29 44 chr1 52702437 52702505 -144492927 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 987 927 158 0 14 chr1 52702513 52702661 -144492771 - B1_Mus1 SINE Alu -1 147 2 2 987 192 125 0 0 chr1 52703157 52703189 -144492243 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 987 464 291 80 0 chr1 52703193 52703344 -144492088 - B3A SINE B2 -34 164 2 2 987 231 330 40 0 chr1 52703402 52703502 -144491930 - L2b LINE L2 -220 3155 3052 2 987 234 341 130 50 chr1 52703672 52703910 -144491522 - MER102b DNA MER1_type 0 341 85 2 987 213 39 0 0 chr1 52705259 52705285 -144490147 + (A)n Simple_repeat Simple_repeat 1 26 0 2 987 2314 59 86 0 chr1 52706208 52706512 -144488920 - L1_Mus1 LINE L1 0 6567 6238 2 987 22 56 0 0 chr1 52707517 52707553 -144487879 + AT_rich Low_complexity Low_complexity 1 36 0 3 987 207 88 0 0 chr1 52707660 52707694 -144487738 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 987 481 325 72 18 chr1 52708156 52708322 -144487110 + B3A SINE B2 1 175 -23 3 987 8564 76 14 2 chr1 52710412 52711591 -144483841 + MusHAL1 LINE L1 873 2065 -647 3 987 4402 58 0 2 chr1 52712425 52712963 -144482469 + L1Md_F2 LINE L1 6034 6570 -12 3 987 534 143 0 0 chr1 52714943 52715048 -144480384 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 987 402 305 102 53 chr1 52716524 52716711 -144478721 - B3A SINE B2 0 198 3 3 987 569 299 0 0 chr1 52716841 52716985 -144478447 - RSINE1 SINE B4 -19 146 3 3 987 582 302 0 18 chr1 52718380 52718545 -144476887 - RSINE1 SINE B4 0 165 4 3 987 180 97 0 0 chr1 52718570 52718601 -144476831 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 987 1293 34 0 0 chr1 52718603 52718751 -144476681 - B1_Mus1 SINE Alu 0 148 1 3 987 832 230 112 22 chr1 52720529 52720842 -144474590 - L1MB3 LINE L1 -37 6134 5833 3 987 2152 300 97 26 chr1 52720865 52721130 -144474302 + Lx8 LINE L1 6409 6706 -767 3 987 318 26 0 0 chr1 52721130 52721169 -144474263 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 987 2152 300 97 26 chr1 52721169 52721898 -144473534 + Lx8 LINE L1 6707 7472 -1 3 987 538 243 94 60 chr1 52721915 52722182 -144473250 - L1MB3 LINE L1 -353 5827 5552 3 987 320 0 25 0 chr1 52722182 52722222 -144473210 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 987 559 243 41 7 chr1 52722461 52722606 -144472826 + L1MEc LINE L1 635 784 -5616 3 987 234 310 56 0 chr1 52722812 52722883 -144472549 - ID4_ SINE ID -1 82 8 3 987 205 314 0 14 chr1 52723486 52723557 -144471875 + CT-rich Low_complexity Low_complexity 1 70 0 3 987 21 0 0 0 chr1 52723564 52723585 -144471847 + AT_rich Low_complexity Low_complexity 1 21 0 3 987 243 79 0 0 chr1 52723742 52723780 -144471652 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 987 1276 61 0 0 chr1 52723783 52723930 -144471502 - B1_Mus1 SINE Alu 0 148 2 3 987 181 132 50 50 chr1 52724108 52724148 -144471284 + MIRm SINE MIR 237 276 0 3 987 326 256 126 15 chr1 52724352 52724511 -144470921 - MIR SINE MIR -58 210 32 3 987 991 97 0 20 chr1 52724660 52724807 -144470625 + B1_Mus1 SINE Alu 5 148 0 3 987 413 257 44 94 chr1 52724668 52724827 -144470605 + B4A SINE B4 96 246 -46 3 987 396 266 17 23 chr1 52724829 52725002 -144470430 + GA-rich Low_complexity Low_complexity 4 175 0 3 987 244 368 0 0 chr1 52725006 52725074 -144470358 + polypurine Low_complexity Low_complexity 1 68 0 3 987 503 31 15 0 chr1 52725076 52725141 -144470291 + (GAGAA)n Simple_repeat Simple_repeat 4 69 0 3 987 1257 69 120 5 chr1 52725335 52725552 -144469880 - RMER12B LTR ERVK -204 1200 959 3 987 412 268 126 18 chr1 52725933 52726100 -144469332 - MLT1J1 LTR MaLR 0 444 260 3 987 251 145 43 14 chr1 52726337 52726407 -144469025 + GA-rich Low_complexity Low_complexity 2 73 0 3 987 680 289 42 21 chr1 52727247 52727438 -144467994 - B3A SINE B2 -3 195 1 3 987 730 234 136 16 chr1 52728636 52728827 -144466605 + B3 SINE B2 1 214 -2 3 987 1137 217 5 15 chr1 52728887 52729088 -144466344 - B3 SINE B2 -3 213 15 3 987 496 202 106 0 chr1 52729135 52729229 -144466203 - RSINE1 SINE B4 -13 152 49 3 987 509 215 29 64 chr1 52729590 52729794 -144465638 + RLTR15 LTR ERVK 147 343 -16 3 987 482 370 48 7 chr1 52729845 52729992 -144465440 + RSINE1 SINE B4 13 165 0 3 987 281 278 27 14 chr1 52730031 52730104 -144465328 - ID4 SINE ID -7 76 3 3 987 437 270 54 0 chr1 52731126 52731237 -144464195 - PB1D7 SINE Alu -2 118 2 3 987 4874 85 0 0 chr1 52731586 52732189 -144463243 - L1_Mus4 LINE L1 -2 6634 6032 3 987 36 0 0 0 chr1 52733027 52733063 -144462369 + AT_rich Low_complexity Low_complexity 1 36 0 3 987 225 154 0 0 chr1 52734167 52734206 -144461226 + (CAGG)n Simple_repeat Simple_repeat 1 39 0 3 987 696 303 6 0 chr1 52734210 52734375 -144461057 - B3A SINE B2 -30 168 3 3 987 401 272 225 5 chr1 52734882 52735094 -144460338 - MER58B DNA MER1_type -36 305 50 3 987 474 293 37 81 chr1 52735976 52736356 -144459076 + MTEa LTR MaLR 19 379 0 3 987 409 274 101 33 chr1 52736695 52736936 -144458496 + MLT1B LTR MaLR 95 373 -17 3 987 703 242 51 51 chr1 52737595 52737791 -144457641 + B3A SINE B2 3 198 0 3 987 438 139 0 0 chr1 52737948 52738020 -144457412 + (GGA)n Simple_repeat Simple_repeat 3 74 0 3 987 396 0 0 0 chr1 52739409 52739453 -144455979 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 987 247 235 58 14 chr1 52739896 52739965 -144455467 + MLT1K LTR MaLR 494 565 -30 3 987 184 412 0 24 chr1 52739980 52740062 -144455370 + L3 LINE CR1 4321 4400 -89 3 987 864 299 21 32 chr1 52740112 52740395 -144455037 - MLT1B LTR MaLR -32 358 79 3 987 374 216 2 47 chr1 52740746 52740836 -144454596 + RSINE1 SINE B4 2 85 -80 3 987 651 94 0 0 chr1 52741939 52742035 -144453397 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 987 234 91 0 0 chr1 52742342 52742375 -144453057 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 987 346 323 15 0 chr1 52742738 52742868 -144452564 + GA-rich Low_complexity Low_complexity 1 132 0 3 987 293 297 111 79 chr1 52743107 52743297 -144452135 - RMER30 DNA MER1_type -4 198 3 3 987 783 265 113 23 chr1 52743765 52744031 -144451401 + B4A SINE B4 1 290 -2 3 987 975 52 0 0 chr1 52744322 52744456 -144450976 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 987 229 312 56 42 chr1 52744530 52744674 -144450758 + L2a LINE L2 3280 3425 -1 3 987 21 0 0 0 chr1 52745226 52745247 -144450185 + AT_rich Low_complexity Low_complexity 1 21 0 3 987 1004 236 69 50 chr1 52747094 52747313 -144448119 + B4 SINE B4 1 222 -70 3 987 272 48 24 0 chr1 52747313 52747355 -144448077 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 987 1004 236 69 50 chr1 52747355 52747412 -144448020 + B4 SINE B4 223 282 -10 3 987 243 0 0 0 chr1 52747419 52747446 -144447986 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 987 549 0 0 0 chr1 52747451 52747512 -144447920 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 987 213 39 0 0 chr1 52747549 52747575 -144447857 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3 987 1643 62 0 0 chr1 52748250 52748442 -144446990 + B2_Mm1t SINE B2 2 193 0 3 987 366 61 0 0 chr1 52749018 52749067 -144446365 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 987 311 164 41 0 chr1 52749537 52749610 -144445822 + CT-rich Low_complexity Low_complexity 4 79 0 3 987 208 224 0 0 chr1 52749610 52749659 -144445773 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 987 324 0 0 0 chr1 52749727 52749763 -144445669 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 987 612 263 24 41 chr1 52749815 52750008 -144445424 - B4A SINE B4 -97 195 6 3 987 405 252 22 58 chr1 52750135 52750274 -144445158 + RSINE1 SINE B4 29 162 -3 3 987 311 169 0 48 chr1 52750412 52750474 -144444958 + RSINE1 SINE B4 53 111 -54 3 987 459 52 0 0 chr1 52750474 52750532 -144444900 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 987 31 0 0 0 chr1 52750589 52750620 -144444812 + AT_rich Low_complexity Low_complexity 1 31 0 3 987 22 35 0 0 chr1 52751010 52751039 -144444393 + AT_rich Low_complexity Low_complexity 1 29 0 3 987 35485 70 5 6 chr1 52751198 52756660 -144438772 + L1Md_F3 LINE L1 196 5653 -230 3 987 5996 33 4 1 chr1 52756649 52757349 -144438083 + L1Md_F3 LINE L1 5862 6563 -21 3 987 639 283 164 29 chr1 52757927 52758171 -144437261 + B4 SINE B4 2 278 -14 3 987 465 298 99 0 chr1 52759699 52759830 -144435602 - RSINE1 SINE B4 -19 146 3 3 987 782 171 48 35 chr1 52759936 52760081 -144435351 + B1_Mur1 SINE Alu 1 147 -2 3 987 271 250 38 0 chr1 52760427 52760507 -144434925 + L1MEc LINE L1 428 510 -5890 3 987 256 261 180 0 chr1 52760591 52760702 -144434730 - MER5B DNA MER1_type -6 172 42 3 987 755 262 86 19 chr1 52761773 52761983 -144433449 + B4 SINE B4 2 225 -67 3 987 712 237 7 7 chr1 52761985 52762125 -144433307 + B1_Mur1 SINE Alu 1 140 -9 3 987 1244 68 0 7 chr1 52762307 52762455 -144432977 - B1_Mm SINE Alu 0 147 1 3 987 426 280 123 22 chr1 52762849 52763028 -144432404 - B4 SINE B4 -11 281 85 3 987 382 236 0 0 chr1 52763380 52763452 -144431980 + ID4_ SINE ID 2 73 -10 3 987 659 286 27 27 chr1 52766764 52766947 -144428485 + B3A SINE B2 3 185 -13 3 987 233 233 0 16 chr1 52766947 52767008 -144428424 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 987 318 223 376 6 chr1 52767276 52767437 -144427995 - MIR SINE MIR -10 252 33 3 987 238 184 188 35 chr1 52767922 52768008 -144427424 - B1_Mur2 SINE Alu -2 147 50 3 987 385 244 13 0 chr1 52768744 52768822 -144426610 - ID4_ SINE ID -3 80 2 3 987 675 252 0 14 chr1 52769513 52769654 -144425778 - B1_Mus1 SINE Alu -7 141 3 3 987 331 265 0 121 chr1 52769551 52769667 -144425765 - MT2B LTR ERVL -344 257 156 3 987 304 332 87 50 chr1 52770043 52770284 -144425148 + MLT1A LTR MaLR 111 360 -14 3 987 390 306 90 23 chr1 52771659 52771836 -144423596 - MIR SINE MIR -54 208 20 3 987 417 285 65 24 chr1 52772091 52772260 -144423172 + L1_Mur3 LINE L1 4160 4335 -1545 3 987 311 334 39 4 chr1 52772260 52772373 -144423059 + RSINE1 SINE B4 9 127 -38 3 987 28 0 0 0 chr1 52772439 52772467 -144422965 + AT_rich Low_complexity Low_complexity 1 28 0 3 987 876 188 122 20 chr1 52772472 52772668 -144422764 - B3 SINE B2 0 216 1 4 987 1101 296 59 66 chr1 52772690 52773812 -144421620 + L1MA5A LINE L1 4356 5462 -835 4 987 567 160 23 70 chr1 52773825 52773953 -144421479 + B1_Mur4 SINE Alu 28 149 -1 4 987 1106 264 83 10 chr1 52773954 52774364 -144421068 + L1MA5A LINE L1 5491 5930 -367 4 987 369 0 0 0 chr1 52774392 52774433 -144420999 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 987 1019 151 20 0 chr1 52775744 52775890 -144419542 + B1_Mur4 SINE Alu 2 150 0 4 987 182 37 37 0 chr1 52775902 52775929 -144419503 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 4 987 1560 68 0 20 chr1 52776783 52776978 -144418454 + B2_Mm2 SINE B2 1 191 -4 4 987 297 0 0 0 chr1 52777989 52778022 -144417410 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 987 447 19 0 0 chr1 52780169 52780221 -144415211 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 987 21 0 0 0 chr1 52781623 52781644 -144413788 + AT_rich Low_complexity Low_complexity 1 21 0 4 987 221 327 56 9 chr1 52781991 52782099 -144413333 + MIRb SINE MIR 36 148 -120 4 987 412 200 27 7 chr1 52782201 52782347 -144413085 + (TA)n Simple_repeat Simple_repeat 2 150 0 4 987 25 51 0 0 chr1 52782463 52782502 -144412930 + AT_rich Low_complexity Low_complexity 1 39 0 4 987 21 0 0 0 chr1 52783147 52783168 -144412264 + AT_rich Low_complexity Low_complexity 1 21 0 4 987 21 36 0 0 chr1 52783590 52783618 -144411814 + GC_rich Low_complexity Low_complexity 1 28 0 4 987 23 0 0 0 chr1 52783783 52783806 -144411626 + GC_rich Low_complexity Low_complexity 1 23 0 4 987 22 0 0 0 chr1 52783834 52783856 -144411576 + GC_rich Low_complexity Low_complexity 1 22 0 4 987 33 43 0 0 chr1 52783905 52783952 -144411480 + GC_rich Low_complexity Low_complexity 1 47 0 4 987 597 14 0 0 chr1 52785392 52785462 -144409970 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 987 33 25 0 0 chr1 52785651 52785691 -144409741 + AT_rich Low_complexity Low_complexity 1 40 0 4 987 240 326 32 0 chr1 52787449 52787544 -144407888 - L2b LINE L2 -192 3183 3086 4 987 299 318 154 29 chr1 52787696 52788143 -144407289 - L2b LINE L2 -562 2857 2355 4 987 2731 94 5 3 chr1 52788620 52789003 -144406429 + L1_Mus4 LINE L1 6248 6631 -5 4 987 662 306 78 23 chr1 52789652 52789910 -144405522 + B4 SINE B4 1 272 -20 4 987 352 247 11 0 chr1 52790288 52790377 -144405055 - L1ME3A LINE L1 -196 5977 5888 4 987 185 137 0 38 chr1 52790409 52790462 -144404970 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 987 357 319 84 26 chr1 52790525 52790715 -144404717 - L1ME3A LINE L1 -475 5765 5565 4 987 259 342 118 19 chr1 52790798 52791069 -144404363 - L1MC4a LINE L1 -273 7609 7312 4 987 560 287 127 30 chr1 52791077 52791314 -144404118 + MLT1A1 LTR MaLR 3 262 -146 4 987 589 282 123 64 chr1 52791369 52791963 -144403469 - L1ME1 LINE L1 -233 5946 5318 4 987 1166 241 104 33 chr1 52791973 52792397 -144403035 + RLTR20B3 LTR ERVK 21 474 -103 4 987 15344 55 14 7 chr1 52792397 52793778 -144401654 + L1Md_F2 LINE L1 3617 4996 -887 4 987 6144 66 0 0 chr1 52793778 52794547 -144400885 + L1Md_T LINE L1 5814 6582 0 4 987 15344 55 14 7 chr1 52794547 52795121 -144400311 + L1Md_F2 LINE L1 4997 5586 -297 4 987 7694 53 18 24 chr1 52795121 52796117 -144399315 + L1Md_F2 LINE L1 5587 6576 -6 4 987 284 299 2 0 chr1 52796184 52796300 -144399132 - L1MD LINE L1 -829 5317 5201 4 987 228 293 0 17 chr1 52796319 52796378 -144399054 - PB1D10 SINE Alu -26 91 34 4 987 678 268 0 0 chr1 52796458 52796611 -144398821 - B3 SINE B2 0 216 64 4 987 8027 88 34 0 chr1 52796615 52797965 -144397467 - L1_Mus3 LINE L1 0 6638 5220 4 987 337 253 0 0 chr1 52797965 52798040 -144397392 - B3 SINE B2 -140 76 2 4 987 225 321 120 5 chr1 52798119 52798310 -144397122 + L1M5 LINE L1 3182 3394 -2752 4 987 3020 74 5 5 chr1 52798831 52799227 -144396205 - MTA_Mm LTR MaLR 0 396 1 4 987 194 0 39 0 chr1 52799527 52799553 -144395879 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 987 507 285 102 30 chr1 52799743 52800111 -144395321 + L1M5 LINE L1 4480 4874 -1272 4 987 1699 120 0 4 chr1 52800393 52800660 -144394772 - ORR1A3 LTR MaLR -60 266 1 4 987 7516 61 0 0 chr1 52800813 52801761 -144393671 - L1Md_T LINE L1 0 6582 5661 4 987 403 313 39 11 chr1 52802625 52802806 -144392626 - RMER20B LTR ERVK -208 419 234 4 987 407 274 85 8 chr1 52803239 52803357 -144392075 - PB1 SINE Alu 0 127 1 4 987 561 187 0 36 chr1 52803768 52803879 -144391553 + B3 SINE B2 9 115 -101 4 987 433 275 66 0 chr1 52804003 52804155 -144391277 - L1M5 LINE L1 -532 5708 5531 4 987 422 311 16 0 chr1 52804204 52804326 -144391106 - B1F SINE Alu -25 124 1 4 987 258 254 14 0 chr1 52804359 52804392 -144391040 - L1M5 LINE L1 -741 5423 5390 4 987 3304 41 2 5 chr1 52804392 52804788 -144390644 - MTA_Mm LTR MaLR 0 396 2 4 987 258 289 85 23 chr1 52804788 52804960 -144390472 - L1M5 LINE L1 -775 5389 5204 4 987 216 0 0 0 chr1 52805042 52805066 -144390366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 987 814 310 51 68 chr1 52805633 52805737 -144389695 - MER45B DNA Tip100 -214 826 740 4 987 517 263 17 0 chr1 52805737 52805855 -144389577 - PB1D9 SINE Alu 0 120 1 4 987 814 310 51 68 chr1 52805855 52806179 -144389253 - MER45B DNA Tip100 -301 739 405 4 987 213 258 0 0 chr1 52806319 52806385 -144389047 + (CATA)n Simple_repeat Simple_repeat 4 69 0 4 987 2774 88 10 17 chr1 52806456 52806859 -144388573 - L1_Mus4 LINE L1 0 6636 6237 4 987 272 304 104 26 chr1 52807341 52807456 -144387976 - MER45B DNA Tip100 -914 126 3 4 987 851 178 65 4 chr1 52807511 52807743 -144387689 + RMER17C LTR ERVK 1 246 -164 4 987 201 39 0 0 chr1 52807743 52807769 -144387663 + (TCTCC)n Simple_repeat Simple_repeat 3 28 0 4 987 922 181 49 52 chr1 52807769 52808096 -144387336 + RMER17C LTR ERVK 85 410 0 4 987 696 194 41 7 chr1 52808167 52808312 -144387120 + B1_Mur4 SINE Alu 1 150 0 4 987 213 68 22 43 chr1 52808312 52808358 -144387074 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 987 217 198 12 47 chr1 52808568 52808653 -144386779 + A-rich Low_complexity Low_complexity 5 86 0 4 987 375 23 0 0 chr1 52808658 52808702 -144386730 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 987 1067 49 0 7 chr1 52809123 52809266 -144386166 + (GGGGA)n Simple_repeat Simple_repeat 5 146 0 4 987 591 181 0 0 chr1 52809447 52809563 -144385869 + CT-rich Low_complexity Low_complexity 3 118 0 4 987 261 0 0 0 chr1 52809620 52809649 -144385783 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 987 2349 180 66 6 chr1 52810320 52810790 -144384642 + RLTR19 LTR ERVK 2 499 0 4 987 605 317 92 33 chr1 52811323 52811594 -144383838 + B4A SINE B4 1 287 -5 4 987 255 61 0 0 chr1 52811642 52811675 -144383757 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 4 987 2209 170 24 71 chr1 52812278 52812509 -144382923 + RLTR20B3 LTR ERVK 23 244 -333 4 987 1452 44 0 0 chr1 52812509 52812689 -144382743 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 987 2209 170 24 71 chr1 52812689 52812995 -144382437 + RLTR20B3 LTR ERVK 245 535 -42 4 987 663 228 0 49 chr1 52813119 52813262 -144382170 + B1_Mur1 SINE Alu 5 140 -9 4 987 435 19 0 0 chr1 52813282 52813334 -144382098 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 987 292 274 36 0 chr1 52814219 52814303 -144381129 + ID_B1 SINE B4 79 165 -59 4 987 24 0 0 0 chr1 52814336 52814360 -144381072 + AT_rich Low_complexity Low_complexity 1 24 0 4 987 364 199 388 40 chr1 52814482 52814634 -144380798 - B3 SINE B2 -11 205 1 4 987 183 42 0 0 chr1 52815761 52815785 -144379647 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 987 2384 57 30 0 chr1 52815785 52816083 -144379349 + RLTR10E LTR ERVK 5 311 0 4 987 552 198 17 0 chr1 52816184 52816300 -144379132 - RMER1B Other Other -24 1042 925 4 987 2622 118 5 27 chr1 52816423 52816832 -144378600 + MTB LTR MaLR 1 400 0 4 987 449 281 52 139 chr1 52817057 52817262 -144378170 + L1MB2 LINE L1 5676 5855 -328 4 987 1200 61 0 0 chr1 52817262 52817409 -144378023 - B1_Mus1 SINE Alu 0 148 2 4 987 471 269 2 68 chr1 52817409 52817571 -144377861 + L1MB2 LINE L1 5856 6011 -172 4 987 198 71 0 0 chr1 52817606 52817634 -144377798 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 4 987 530 111 0 0 chr1 52817679 52817751 -144377681 - RMER16-int LTR ERVK -1353 4053 3982 4 987 2187 166 71 18 chr1 52817984 52818419 -144377013 - RMER16-int LTR ERVK -1427 3979 3522 4 987 43 113 0 0 chr1 52818423 52818627 -144376805 + AT_rich Low_complexity Low_complexity 1 204 0 4 987 10453 57 13 2 chr1 52818634 52820625 -144374807 - L1_Mus2 LINE L1 -1 6565 4552 4 987 1330 168 163 28 chr1 52821656 52821825 -144373607 - RMER17C LTR ERVK 0 410 213 4 987 525 32 0 0 chr1 52821825 52821888 -144373544 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 4 123 1330 168 163 28 chr1 52821888 52822079 -144373353 - RMER17C LTR ERVK -198 212 2 4 988 891 108 0 21 chr1 52822387 52822529 -144372903 - B2_Mm2 SINE B2 -55 140 2 4 988 2848 98 5 7 chr1 52823112 52823522 -144371910 - L1_Mus3 LINE L1 0 6638 6230 4 988 963 25 0 0 chr1 52823931 52824052 -144371380 + B1_Mus2 SINE Alu 27 147 0 4 988 343 300 25 40 chr1 52824311 52824509 -144370923 - MERVL_2A-int LTR ERVL -1661 4100 3906 4 988 381 315 45 49 chr1 52824849 52825093 -144370339 - MYSERV6-int LTR ERVK -3395 5564 5322 4 988 261 209 14 29 chr1 52825304 52825373 -144370059 - MERVL_2A-int LTR ERVL -2475 3010 2943 4 988 773 67 0 113 chr1 52827663 52827678 -144367754 + polypyrimidine Low_complexity Low_complexity 167 180 0 4 988 1199 6 0 100 chr1 52827678 52827878 -144367554 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 988 773 67 0 113 chr1 52827878 52828065 -144367367 + CT-rich Low_complexity Low_complexity 1 166 0 4 988 1419 17 11 6 chr1 52828066 52828245 -144367187 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 988 365 177 0 12 chr1 52828246 52828326 -144367106 + CT-rich Low_complexity Low_complexity 2 80 0 4 988 1064 124 0 11 chr1 52828326 52828505 -144366927 + (TTC)n Simple_repeat Simple_repeat 2 178 0 4 988 343 0 21 21 chr1 52828535 52828583 -144366849 + (TTC)n Simple_repeat Simple_repeat 1 48 0 4 988 722 209 0 6 chr1 52828583 52828717 -144366715 + CT-rich Low_complexity Low_complexity 34 167 0 4 988 1034 144 0 6 chr1 52828717 52828898 -144366534 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 988 722 209 0 6 chr1 52828898 52828930 -144366502 + polypyrimidine Low_complexity Low_complexity 2 33 0 4 988 1350 86 37 5 chr1 52828930 52829117 -144366315 - B2_Mm2 SINE B2 -1 194 2 4 988 12775 228 37 46 chr1 52830529 52831229 -144364203 + MYSERV6-int LTR ERVK 472 1175 -7784 4 988 247 137 0 56 chr1 52831229 52831273 -144364159 + L1_Mus3 LINE L1 6571 6613 -25 4 988 195 69 0 0 chr1 52831273 52831302 -144364130 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 5 988 12775 194 30 31 chr1 52831311 52834408 -144361024 + MYSERV6-int LTR ERVK 1176 4300 -4659 4 988 29627 112 24 38 chr1 52834419 52838410 -144357022 + Lx3B LINE L1 457 4516 -1370 5 988 1120 74 31 0 chr1 52838410 52838573 -144356859 + B2_Mm2 SINE B2 2 169 -26 5 988 29627 112 24 38 chr1 52838573 52839201 -144356231 + Lx3B LINE L1 4517 5156 -730 5 988 5536 121 87 1 chr1 52839201 52840083 -144355349 + RMER17B LTR ERVK 1 958 0 5 988 29627 97 25 19 chr1 52840083 52841379 -144354053 + Lx3B LINE L1 5157 6466 -507 5 988 1557 260 73 66 chr1 52841379 52842062 -144353370 + MYSERV16_I-int LTR ERVK 224 911 -1415 5 988 280 208 92 66 chr1 52842074 52842190 -144353242 + RMER4A LTR ERVK 308 539 -46 5 988 3120 204 41 74 chr1 52842192 52843161 -144352271 + MYSERV16_I-int LTR ERVK 1046 1982 -344 5 988 387 0 0 0 chr1 52843161 52843204 -144352228 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 988 426 263 32 13 chr1 52843399 52843553 -144351879 - MER2 DNA MER2_type -38 307 151 5 988 223 244 0 0 chr1 52843556 52843597 -144351835 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 988 665 160 136 8 chr1 52844016 52844148 -144351284 + B1_Mur3 SINE Alu 1 149 0 5 988 238 269 50 12 chr1 52844274 52844363 -144351069 + L1MA8 LINE L1 5670 5761 -530 5 988 242 221 49 81 chr1 52844611 52844734 -144350698 + RLTR20B2 LTR ERVK 95 213 -347 5 988 572 244 181 24 chr1 52844913 52845161 -144350271 + L1MA8 LINE L1 5995 6281 -10 5 988 260 298 60 45 chr1 52845471 52845638 -144349794 + RLTR21 LTR ERVK 1081 1254 -318 5 988 967 59 0 15 chr1 52845638 52845775 -144349657 + (TTTC)n Simple_repeat Simple_repeat 4 138 0 5 988 275 0 29 0 chr1 52845776 52845811 -144349621 + (CCTA)n Simple_repeat Simple_repeat 1 36 0 5 988 260 298 60 45 chr1 52845811 52845908 -144349524 + RLTR21 LTR ERVK 1255 1348 -224 5 988 1178 68 0 0 chr1 52845970 52846117 -144349315 + B1_Mus2 SINE Alu 1 147 0 5 988 207 250 155 39 chr1 52847515 52847644 -144347788 - MIR SINE MIR -92 170 27 5 988 263 291 0 25 chr1 52847644 52847725 -144347707 - ID_B1 SINE B4 -67 157 79 5 988 716 294 25 5 chr1 52849075 52849273 -144346159 + B4A SINE B4 2 203 -89 5 988 799 262 157 27 chr1 52849444 52849642 -144345790 + MT2A LTR ERVL 1 209 -324 5 988 261 0 0 0 chr1 52849642 52849671 -144345761 + (CTG)n Simple_repeat Simple_repeat 1 29 0 5 988 799 262 157 27 chr1 52849671 52849919 -144345513 + MT2A LTR ERVL 210 504 -29 5 988 567 43 0 0 chr1 52850603 52850673 -144344759 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 988 536 211 71 24 chr1 52850673 52850799 -144344633 + B3 SINE B2 85 216 0 5 988 887 276 180 8 chr1 52850818 52851180 -144344252 + Lx8 LINE L1 7049 7472 -1 5 988 404 340 14 7 chr1 52852246 52852388 -144343044 + ID_B1 SINE B4 82 224 0 5 988 305 240 120 0 chr1 52852424 52852524 -144342908 + PB1D10 SINE Alu 1 112 -5 5 988 192 215 67 114 chr1 52852563 52852668 -144342764 + MER5A DNA MER1_type 29 128 -61 5 988 684 189 16 8 chr1 52854217 52854345 -144341087 - B2_Mm2 SINE B2 -66 129 1 5 988 27 29 0 0 chr1 52854394 52854428 -144341004 + AT_rich Low_complexity Low_complexity 1 34 0 5 988 345 47 0 0 chr1 52857040 52857083 -144338349 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 988 685 176 8 8 chr1 52857084 52857210 -144338222 - B1_Mus2 SINE Alu -21 126 1 5 988 261 292 43 87 chr1 52857210 52857282 -144338150 - MT2B LTR ERVL -449 152 89 5 988 333 270 92 33 chr1 52859866 52860005 -144335427 - MLT1B LTR MaLR -168 222 75 5 988 764 269 119 25 chr1 52860005 52860140 -144335292 - MER2 DNA MER2_type 0 345 206 5 988 7101 86 31 22 chr1 52860140 52861154 -144334278 + RLTR13D5 LTR ERVK 1 1023 0 5 988 764 269 119 25 chr1 52861154 52861304 -144334128 - MER2 DNA MER2_type -140 205 33 5 988 252 246 72 0 chr1 52861332 52861401 -144334031 - MLT1B LTR MaLR -312 78 5 5 988 273 89 0 0 chr1 52861848 52861893 -144333539 + (A)n Simple_repeat Simple_repeat 1 45 0 5 988 986 265 41 30 chr1 52861913 52862181 -144333251 + B4A SINE B4 1 271 -21 5 988 459 0 0 0 chr1 52862198 52862249 -144333183 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 988 320 270 167 45 chr1 52862358 52862376 -144333056 + B1F SINE Alu 1 147 -1 5 988 363 266 159 35 chr1 52862376 52862489 -144332943 + ID_B1 SINE B4 98 224 0 5 988 284 269 15 0 chr1 52862513 52862580 -144332852 + ID4 SINE ID 1 68 -15 5 988 533 261 153 13 chr1 52862636 52862865 -144332567 + MIRb SINE MIR 6 266 -2 5 988 276 304 19 10 chr1 52862893 52862996 -144332436 + Charlie18a DNA MER1_type 238 341 -1 5 988 649 209 48 42 chr1 52863788 52863953 -144331479 + B3 SINE B2 48 213 -3 5 988 376 316 112 39 chr1 52864789 52865075 -144330357 + L1M5 LINE L1 5461 5767 -473 5 988 198 128 0 0 chr1 52865181 52865220 -144330212 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 988 325 207 24 24 chr1 52865540 52865624 -144329808 + PB1D10 SINE Alu 34 117 0 5 988 275 253 71 60 chr1 52865798 52865882 -144329550 - PB1D10 SINE Alu -15 102 18 5 988 1374 264 67 3 chr1 52865921 52866297 -144329135 - MTD LTR MaLR 0 419 20 5 988 7200 100 10 14 chr1 52866595 52867622 -144327810 + RLTR13D5 LTR ERVK 1 1023 0 5 988 547 277 244 4 chr1 52867790 52868069 -144327363 + L1MB3 LINE L1 5800 6145 -38 5 988 535 248 0 0 chr1 52868217 52868322 -144327110 + PB1D9 SINE Alu 2 106 -14 5 988 285 29 0 0 chr1 52868323 52868357 -144327075 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 988 437 134 36 0 chr1 52868357 52868469 -144326963 + (TG)n Simple_repeat Simple_repeat 2 117 0 5 988 749 116 108 8 chr1 52869321 52869451 -144325981 - B1_Mus1 SINE Alu 0 148 6 5 988 502 259 101 0 chr1 52869618 52869757 -144325675 + B3 SINE B2 5 157 -59 5 988 351 0 0 0 chr1 52869766 52869805 -144325627 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 988 234 0 0 0 chr1 52869806 52869832 -144325600 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 988 180 97 0 0 chr1 52869846 52869877 -144325555 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 988 2557 125 19 35 chr1 52869905 52870368 -144325064 - RMER6B LTR ERVK -5 456 1 5 988 854 158 20 0 chr1 52870603 52870749 -144324683 + B1_Mur3 SINE Alu 1 149 0 5 988 519 17 0 0 chr1 52870811 52870871 -144324561 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 5 988 890 254 87 29 chr1 52871194 52871470 -144323962 + B4A SINE B4 1 292 0 5 988 314 259 50 74 chr1 52871538 52871659 -144323773 + ID_B1 SINE B4 99 216 -8 5 988 26 30 0 0 chr1 52871806 52871839 -144323593 + AT_rich Low_complexity Low_complexity 1 33 0 5 988 610 282 20 5 chr1 52872039 52872242 -144323190 + ID_B1 SINE B4 2 207 -17 5 988 459 276 69 25 chr1 52872392 52872552 -144322880 - B4A SINE B4 -60 232 66 5 988 198 103 0 0 chr1 52873471 52873500 -144321932 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 988 453 228 34 26 chr1 52875445 52875562 -144319870 - PB1D7 SINE Alu 0 120 3 5 988 706 262 0 12 chr1 52876054 52876216 -144319216 + RSINE1 SINE B4 6 165 0 5 988 7364 55 15 4 chr1 52876232 52877162 -144318270 - L1Md_F2 LINE L1 -9 6573 5662 5 988 2464 314 126 53 chr1 52877533 52879198 -144316234 + ORR1E-int LTR MaLR 4 1564 -16 5 988 780 187 30 0 chr1 52879254 52879420 -144316012 + URR1B DNA MER1_type 1 171 -54 5 988 534 90 0 0 chr1 52879426 52879504 -144315928 - ORR1B1 LTR MaLR -9 320 243 5 988 7381 147 35 25 chr1 52879525 52880137 -144315295 - ORR1B1-int LTR MaLR -289 1674 1019 5 988 2868 16 0 0 chr1 52880137 52880459 -144314973 + RLTRETN_Mm LTR ERVK 1 322 0 5 988 7381 156 38 33 chr1 52880459 52881463 -144313969 - ORR1B1-int LTR MaLR -945 1018 2 5 988 1781 137 70 87 chr1 52881466 52881835 -144313597 - ORR1B1 LTR MaLR -7 387 25 5 988 257 182 18 0 chr1 52881878 52881933 -144313499 + URR1B DNA MER1_type 169 224 -1 5 988 22 70 0 0 chr1 52882064 52882107 -144313325 + AT_rich Low_complexity Low_complexity 1 43 0 5 988 504 0 0 0 chr1 52882503 52882559 -144312873 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 988 2317 192 101 0 chr1 52882850 52883334 -144312098 - MT2A LTR ERVL 0 533 1 5 988 345 82 0 0 chr1 52883545 52883594 -144311838 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 988 224 209 23 0 chr1 52883627 52883670 -144311762 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 988 213 152 43 0 chr1 52883793 52883839 -144311593 - PB1D7 SINE Alu 0 120 73 5 988 7297 101 36 8 chr1 52884839 52885893 -144309539 - Lx2 LINE L1 -4 6993 5911 5 988 383 268 63 35 chr1 52886759 52886902 -144308530 + B3A SINE B2 14 160 -38 5 988 274 294 20 61 chr1 52887364 52887462 -144307970 - RMER20B LTR ERVK -36 591 498 5 988 849 202 132 23 chr1 52887480 52887738 -144307694 - RMER20B LTR ERVK -213 414 129 5 988 1912 220 55 101 chr1 52888438 52889110 -144306322 - RCHARR1 DNA MER1_type -53 921 281 5 988 186 128 0 0 chr1 52890990 52891029 -144304403 + (A)n Simple_repeat Simple_repeat 1 39 0 5 988 718 265 96 15 chr1 52891194 52891393 -144304039 + B3 SINE B2 2 216 0 5 988 490 314 77 6 chr1 52891797 52891967 -144303465 + B3A SINE B2 1 182 -16 5 988 279 113 0 0 chr1 52891970 52892023 -144303409 + (CATA)n Simple_repeat Simple_repeat 2 54 0 5 988 1178 106 83 11 chr1 52892180 52892361 -144303071 + B2_Mm2 SINE B2 2 195 0 5 988 3343 222 94 48 chr1 52892638 52893285 -144302147 + Lx7 LINE L1 5985 6665 -1031 5 988 4277 152 32 12 chr1 52893285 52894026 -144301406 + RMER6A LTR ERVK 1 756 0 5 988 3343 222 94 48 chr1 52894026 52894301 -144301131 + Lx7 LINE L1 6666 6950 -746 5 988 207 0 0 0 chr1 52894442 52894465 -144300967 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 5 988 255 250 13 13 chr1 52894470 52894547 -144300885 + GA-rich Low_complexity Low_complexity 2 78 0 5 988 285 98 0 0 chr1 52894549 52894590 -144300842 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 5 988 1784 217 43 20 chr1 52894664 52894795 -144300637 + Lx7 LINE L1 6908 7058 -638 5 988 234 0 0 0 chr1 52894795 52894821 -144300611 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 988 1784 218 88 12 chr1 52894821 52895354 -144300078 + Lx7 LINE L1 7059 7696 0 5 988 182 86 0 79 chr1 52895354 52895370 -144300062 + A-rich Low_complexity Low_complexity 1 16 0 5 988 1171 43 65 0 chr1 52895370 52895508 -144299924 + B1_Mus1 SINE Alu 2 148 0 5 988 182 86 0 79 chr1 52895508 52895529 -144299903 + A-rich Low_complexity Low_complexity 17 35 0 5 988 339 130 0 0 chr1 52895804 52895858 -144299574 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 5 988 1241 55 0 7 chr1 52895858 52896006 -144299426 - B1_Mm SINE Alu 0 147 1 6 988 243 0 0 0 chr1 52896042 52896069 -144299363 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 988 408 254 16 56 chr1 52896162 52896287 -144299145 - RLTR18B LTR ERVK -10 502 383 6 988 498 33 0 0 chr1 52896287 52896347 -144299085 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 6 988 704 71 0 10 chr1 52896347 52896447 -144298985 + (TTTTC)n Simple_repeat Simple_repeat 5 103 0 6 988 326 187 0 11 chr1 52896463 52896555 -144298877 + CT-rich Low_complexity Low_complexity 3 93 0 6 988 673 313 64 46 chr1 52896558 52896903 -144298529 - RLTR18B LTR ERVK -135 377 27 6 988 522 254 114 70 chr1 52897556 52897846 -144297586 + RLTR12B LTR ERVK 14 288 -240 6 988 857 114 29 0 chr1 52897838 52897978 -144297454 + RMER6D LTR ERVK 189 332 -388 6 988 961 161 23 217 chr1 52898000 52898247 -144297185 - ORR1B1 LTR MaLR -186 208 1 6 988 363 223 81 72 chr1 52898307 52898418 -144297014 + L1MB8 LINE L1 5798 5909 -269 6 988 516 103 46 50 chr1 52898462 52898589 -144296843 + MTD LTR MaLR 239 405 -14 6 988 286 331 94 58 chr1 52898674 52898716 -144296716 - MER45A DNA Tip100 -30 148 108 6 988 630 298 6 42 chr1 52898716 52898884 -144296548 + RSINE1 SINE B4 2 163 -2 6 988 180 77 0 0 chr1 52898887 52898913 -144296519 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 988 286 331 94 58 chr1 52898913 52899004 -144296428 - MER45A DNA Tip100 -71 107 6 6 988 2200 103 45 63 chr1 52899480 52899812 -144295620 - ORR1A3 LTR MaLR 0 326 1 6 988 371 247 165 0 chr1 52900070 52900167 -144295265 - PB1D10 SINE Alu -4 113 1 6 988 21 0 0 0 chr1 52900182 52900203 -144295229 + AT_rich Low_complexity Low_complexity 1 21 0 6 988 1229 75 0 0 chr1 52900206 52900353 -144295079 + B1_Mm SINE Alu 1 147 0 6 988 6673 86 30 15 chr1 52900603 52901560 -144293872 - Lx LINE L1 -6 6648 5677 6 988 30 0 0 0 chr1 52901743 52901773 -144293659 + GC_rich Low_complexity Low_complexity 1 30 0 6 988 507 307 63 69 chr1 52902792 52902981 -144292451 + B3A SINE B2 1 188 -10 6 988 1090 104 21 0 chr1 52902992 52903136 -144292296 + B1_Mus2 SINE Alu 1 147 0 6 988 531 0 0 0 chr1 52904133 52904192 -144291240 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 988 431 288 78 34 chr1 52904202 52904247 -144291185 - Lx8 LINE L1 -1598 5875 5837 6 988 2358 160 33 33 chr1 52904247 52904668 -144290764 + MTC LTR MaLR 1 421 0 6 988 431 289 84 36 chr1 52904668 52904865 -144290567 - Lx8 LINE L1 -1637 5836 5623 6 988 1296 48 0 0 chr1 52905373 52905520 -144289912 + B1_Mus2 SINE Alu 1 147 0 6 988 474 82 54 9 chr1 52905521 52905632 -144289800 + (CAAAA)n Simple_repeat Simple_repeat 1 116 0 6 988 437 141 143 61 chr1 52906646 52906744 -144288688 - PB1D9 SINE Alu -1 119 14 6 988 201 368 48 8 chr1 52906758 52906884 -144288548 - MER5A DNA MER1_type -55 134 4 6 988 221 171 0 0 chr1 52907093 52907128 -144288304 - ID4 SINE ID -48 35 1 6 988 193 346 49 42 chr1 52907472 52907614 -144287818 - MER5B DNA MER1_type -14 164 22 6 988 25 31 0 0 chr1 52907834 52907866 -144287566 + AT_rich Low_complexity Low_complexity 1 32 0 6 988 528 275 182 35 chr1 52907931 52908353 -144287079 - L1MC1 LINE L1 -238 6095 5612 6 988 370 114 14 14 chr1 52908392 52908463 -144286969 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 988 243 300 32 43 chr1 52908691 52908785 -144286647 + RMER15 LTR ERVL 359 451 -124 6 988 321 259 90 14 chr1 52910144 52910289 -144285143 + RMER15 LTR ERVL 403 558 -17 6 988 213 145 15 46 chr1 52910819 52910884 -144284548 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 6 988 910 215 42 16 chr1 52910946 52911135 -144284297 + B3 SINE B2 2 195 -21 6 988 2364 39 0 7 chr1 52911135 52911421 -144284011 - L1Md_F3 LINE L1 -94 6490 6207 6 988 334 265 0 0 chr1 52911643 52911711 -144283721 - ID4_ SINE ID -4 79 12 6 988 263 235 0 0 chr1 52911858 52911914 -144283518 - B3A SINE B2 -139 56 1 6 988 502 279 129 44 chr1 52912206 52912363 -144283069 - RLTR21 LTR ERVK -32 1372 1197 6 988 438 20 0 0 chr1 52912363 52912414 -144283018 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 988 4172 188 68 85 chr1 52912414 52913519 -144281913 - RLTR21 LTR ERVK -208 1196 1 6 988 1527 51 17 0 chr1 52913870 52914046 -144281386 - B2_Mm2 SINE B2 -16 179 1 6 988 182 174 128 21 chr1 52914123 52914170 -144281262 - L3 LINE CR1 -286 4203 4152 6 988 778 218 21 21 chr1 52914267 52914459 -144280973 + B2_Mm2 SINE B2 4 195 0 6 988 6726 50 35 3 chr1 52914864 52915647 -144279785 + RLTR13C2 LTR ERVK 1 808 0 6 988 3668 50 2 0 chr1 52915647 52916164 -144279268 - L1_Mus2 LINE L1 -541 6025 5508 6 988 4125 79 0 2 chr1 52916164 52916673 -144278759 + L1_Mus2 LINE L1 6059 6566 0 6 988 1561 184 205 27 chr1 52917252 52917627 -144277805 - RMER10A LTR ERVL 0 442 1 6 988 212 269 75 0 chr1 52917645 52917712 -144277720 - L3 LINE CR1 -273 4216 4145 6 988 383 222 89 20 chr1 52917715 52917816 -144277616 - PB1D10 SINE Alu -5 112 5 6 988 265 306 102 20 chr1 52917952 52918099 -144277333 + MIRb SINE MIR 11 169 -99 6 988 4704 46 2 2 chr1 52918370 52918910 -144276522 + L1Md_F2 LINE L1 6043 6582 0 6 988 216 0 0 0 chr1 52918954 52918978 -144276454 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 6 988 222 156 0 0 chr1 52920088 52920133 -144275299 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 988 473 313 6 0 chr1 52920194 52920373 -144275059 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 988 643 220 294 25 chr1 52920675 52920965 -144274467 - ORR1D2 LTR MaLR 0 419 4 6 988 21 0 0 0 chr1 52921092 52921113 -144274319 + AT_rich Low_complexity Low_complexity 1 21 0 6 988 341 298 132 0 chr1 52921316 52921437 -144273995 + MER2 DNA MER2_type 2 138 -207 6 988 288 0 0 0 chr1 52922136 52922168 -144273264 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 988 252 143 0 0 chr1 52923339 52923381 -144272051 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 6 988 281 245 0 0 chr1 52923638 52923691 -144271741 + MER3 DNA MER1_type 85 137 -72 6 988 2013 195 81 36 chr1 52923704 52923792 -144271640 - RLTR20A1 LTR ERVK -7 544 459 6 988 198 71 0 0 chr1 52923792 52923820 -144271612 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 988 2013 195 81 36 chr1 52923820 52924252 -144271180 - RLTR20A1 LTR ERVK -93 458 2 6 988 2198 174 6 3 chr1 52924707 52925064 -144270368 - RLTR15 LTR ERVK -1 358 1 6 988 432 0 0 0 chr1 52926077 52926125 -144269307 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 988 384 283 38 38 chr1 52926546 52926678 -144268754 - B1F2 SINE Alu -7 142 11 6 988 236 355 84 0 chr1 52927230 52927337 -144268095 - PB1D10 SINE Alu -1 116 1 6 988 414 242 45 45 chr1 52927662 52927796 -144267636 - RSINE1 SINE B4 -15 150 17 6 988 602 235 27 1 chr1 52927835 52927947 -144267485 + B3 SINE B2 74 187 -29 6 988 423 0 0 0 chr1 52927947 52927994 -144267438 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 988 348 277 47 70 chr1 52927994 52928009 -144267423 + B3A SINE B2 185 197 -1 6 988 397 267 27 45 chr1 52928139 52928249 -144267183 + PB1D10 SINE Alu 10 117 0 6 988 404 274 167 68 chr1 52928524 52928775 -144266657 + B4 SINE B4 1 276 -16 6 988 295 299 0 15 chr1 52928887 52928955 -144266477 - B3 SINE B2 -34 182 116 6 988 259 238 62 0 chr1 52928988 52929068 -144266364 - MER57D LTR ERV1 -73 338 254 6 988 389 268 47 47 chr1 52929114 52929263 -144266169 - MER57D LTR ERV1 -261 150 2 6 988 235 223 0 60 chr1 52929338 52929438 -144265994 + T-rich Low_complexity Low_complexity 3 96 0 6 988 204 122 0 0 chr1 52931058 52931099 -144264333 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 988 278 232 43 14 chr1 52932170 52932240 -144263192 - RLTR16 LTR ERVK -1 504 433 6 988 2279 192 42 27 chr1 52932240 52932722 -144262710 - RLTR16 LTR ERVK -12 493 5 6 988 1641 123 108 34 chr1 52932933 52933228 -144262204 + ORR1A2 LTR MaLR 1 317 -10 6 988 246 340 106 67 chr1 52933940 52934375 -144261057 - L2 LINE L2 -557 2862 2411 6 988 284 292 10 59 chr1 52934472 52934574 -144260858 + Tigger9a DNA Tigger 20 116 -616 6 988 1475 85 16 26 chr1 52934685 52934879 -144260553 + B2_Mm2 SINE B2 1 192 -3 6 988 1186 41 0 64 chr1 52935376 52935532 -144259900 - B1_Mus2 SINE Alu 0 147 2 6 988 6407 171 72 8 chr1 52935971 52937299 -144258133 + L1_Mur3 LINE L1 55 1477 -4403 6 988 970 49 0 0 chr1 52937296 52937419 -144258013 - L1_Mus1 LINE L1 -536 6031 5909 6 988 382 141 14 0 chr1 52937433 52937504 -144257928 + L1_Mur3 LINE L1 1477 1548 -4332 6 988 8099 59 0 0 chr1 52937508 52938536 -144256896 - L1_Mus1 LINE L1 0 6567 5539 6 988 738 75 153 22 chr1 52938539 52938676 -144256756 + L1_Mur3 LINE L1 1571 1725 -4155 6 988 795 98 76 0 chr1 52938682 52938814 -144256618 - Lx2A LINE L1 -931 6077 5936 6 988 1704 180 10 35 chr1 52938815 52939126 -144256306 + Lx6 LINE L1 6224 6526 -934 6 988 3803 156 88 92 chr1 52939136 52939454 -144255978 - RMER17B LTR ERVK -15 794 467 6 988 1329 27 0 0 chr1 52939454 52939601 -144255831 - B1_Mus2 SINE Alu 0 147 1 6 988 3803 106 46 39 chr1 52939601 52940039 -144255393 - RMER17B LTR ERVK -492 466 1 6 988 1595 155 43 0 chr1 52940039 52940297 -144255135 + Lx6 LINE L1 6521 6789 -671 6 988 241 195 0 0 chr1 52940293 52940334 -144255098 - Lx9 LINE L1 -463 7181 7141 6 988 444 118 0 0 chr1 52940642 52940710 -144254722 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 988 239 295 57 8 chr1 52941469 52941592 -144253840 + Helitron1Nb_Mam RC Helitron 953 1081 -35 6 988 378 260 81 35 chr1 52942368 52942638 -144252794 - L1MEc LINE L1 -1328 4988 4714 6 988 1116 292 11 11 chr1 52942691 52942978 -144252454 - B4A SINE B4 -4 288 2 6 988 226 241 75 12 chr1 52943124 52943204 -144252228 - Lx6 LINE L1 -2 7458 7374 6 988 1692 246 132 2 chr1 52943284 52943753 -144251679 - Lx7 LINE L1 -284 7412 6883 6 988 627 232 44 17 chr1 52943755 52943935 -144251497 - Lx7 LINE L1 -1697 5999 5815 6 988 849 84 0 0 chr1 52943959 52944078 -144251354 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 6 988 1505 168 144 16 chr1 52944079 52944152 -144251280 - Lx7 LINE L1 -181 5699 5606 6 988 1203 41 7 0 chr1 52944152 52944298 -144251134 + B1_Mus2 SINE Alu 1 147 0 6 988 1505 168 144 16 chr1 52944298 52944605 -144250827 - Lx7 LINE L1 -275 5605 5270 6 988 39228 11 1 6 chr1 52944576 52950964 -144244468 - L1Md_A LINE L1 0 6582 232 6 988 1420 231 21 15 chr1 52950968 52951379 -144244053 - L1_Mur3 LINE L1 -571 5306 4919 6 988 3332 93 46 25 chr1 52951372 52951848 -144243584 - L1_Mur2 LINE L1 -3336 2541 2050 7 988 441 0 0 0 chr1 52951848 52951897 -144243535 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 988 3332 93 46 25 chr1 52951897 52951985 -144243447 - L1_Mur2 LINE L1 -3828 2049 1965 7 988 1960 94 19 3 chr1 52951967 52952288 -144243144 - L1_Mur2 LINE L1 -4220 1657 1332 7 988 1448 180 50 11 chr1 52952300 52952677 -144242755 - L1_Mur3 LINE L1 -2503 3377 2986 6 123 307 278 189 28 chr1 52952708 52953104 -144242328 - L1MEc LINE L1 -2202 4117 3658 6 989 405 330 137 0 chr1 52953458 52953655 -144241777 + MER47B DNA MER2_type 67 290 -128 7 989 524 262 75 14 chr1 52953793 52954072 -144241360 - L1MEc LINE L1 -4816 1584 1289 6 989 257 274 32 0 chr1 52954151 52954165 -144241267 - ID SINE ID -144 80 17 7 989 293 167 21 0 chr1 52954165 52954213 -144241219 - ID4 SINE ID -18 65 17 7 989 825 11 0 0 chr1 52954234 52954328 -144241104 + (TTC)n Simple_repeat Simple_repeat 3 96 0 7 989 3587 54 46 2 chr1 52954894 52955355 -144240077 - L1_Mus1 LINE L1 -1 6566 6086 7 989 438 276 57 0 chr1 52955766 52955871 -144239561 - PB1D9 SINE Alu 0 120 10 7 989 2662 164 0 2 chr1 52955880 52956302 -144239130 + MTC LTR MaLR 1 421 0 7 989 319 321 55 9 chr1 52956456 52956566 -144238866 - PB1D9 SINE Alu -5 115 1 7 989 330 270 93 61 chr1 52956566 52956599 -144238833 - MT2B LTR ERVL -441 160 125 7 989 825 241 160 20 chr1 52957116 52957422 -144238010 - MLT1B LTR MaLR -4 370 39 7 989 255 279 44 0 chr1 52957396 52957464 -144237968 + PB1D10 SINE Alu 45 115 -2 7 989 733 274 45 15 chr1 52957513 52957713 -144237719 - B4 SINE B4 -39 253 48 7 989 266 308 88 0 chr1 52958207 52958298 -144237134 + MIRb SINE MIR 22 120 -148 7 989 207 274 72 0 chr1 52958405 52958481 -144236951 + MIR SINE MIR 92 174 -94 7 989 2029 177 41 3 chr1 52958999 52959361 -144236071 - ORR1C1 LTR MaLR -2 376 1 7 989 545 211 40 119 chr1 52960148 52960299 -144235133 + B4A SINE B4 2 140 -152 7 989 486 0 0 0 chr1 52960311 52960365 -144235067 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 989 360 0 0 0 chr1 52960365 52960404 -144235028 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 989 1827 188 67 78 chr1 52962413 52962937 -144232495 - RLTR11A LTR ERVK -1 527 10 7 989 584 284 21 5 chr1 52963772 52963963 -144231469 - L1M5 LINE L1 -642 5531 5338 7 989 252 242 32 0 chr1 52964269 52964331 -144231101 - MER68 LTR ERVL -10 553 490 7 989 355 269 133 31 chr1 52964563 52965153 -144230279 - L1M5 LINE L1 -1639 4507 3852 7 989 1452 181 8 0 chr1 52965349 52965592 -144229840 + ORR1D1 LTR MaLR 1 245 -129 7 989 394 340 68 52 chr1 52966146 52966471 -144228961 - MLT2B1 LTR ERVL -55 512 83 7 989 380 267 0 0 chr1 52966906 52966981 -144228451 + B3 SINE B2 3 77 -139 7 989 1740 10 0 0 chr1 52967038 52967231 -144228201 + B2_Mm1a SINE B2 1 193 0 7 989 231 114 0 0 chr1 52967402 52967446 -144227986 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 989 504 309 44 44 chr1 52967938 52968165 -144227267 + Lx8 LINE L1 7100 7326 -147 7 989 2361 88 30 0 chr1 52968675 52969006 -144226426 - MTA_Mm LTR MaLR 0 396 56 7 989 5808 131 58 15 chr1 52969104 52970464 -144224968 + Lx LINE L1 5248 6652 -2 7 989 1906 309 101 18 chr1 52970763 52972277 -144223155 + L1_Mur3 LINE L1 1336 2975 -2905 7 989 240 59 0 0 chr1 52973625 52973659 -144221773 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 7 989 345 82 0 0 chr1 52974193 52974242 -144221190 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 989 312 223 17 134 chr1 52974680 52974799 -144220633 + MT2B LTR ERVL 153 257 -344 7 989 779 208 0 20 chr1 52974700 52974847 -144220585 + B1_Mur2 SINE Alu 6 149 0 7 989 254 244 293 0 chr1 52974936 52975018 -144220414 - PB1D10 SINE Alu -11 106 1 7 989 2997 38 0 0 chr1 52975584 52975930 -144219502 - ORR1A1 LTR MaLR 0 346 1 7 989 828 20 0 0 chr1 52976251 52976349 -144219083 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 989 482 352 92 75 chr1 52977236 52977571 -144217861 + MER58B DNA MER1_type 1 341 0 7 989 901 232 62 0 chr1 52978097 52978291 -144217141 - B3 SINE B2 -10 206 1 7 989 2382 113 36 23 chr1 52978629 52979017 -144216415 + L1_Mus4 LINE L1 6237 6629 -7 7 989 21 0 0 0 chr1 52980150 52980171 -144215261 + AT_rich Low_complexity Low_complexity 1 21 0 7 989 25 31 0 0 chr1 52980365 52980397 -144215035 + AT_rich Low_complexity Low_complexity 1 32 0 7 989 22 0 0 0 chr1 52980996 52981018 -144214414 + AT_rich Low_complexity Low_complexity 1 22 0 7 989 207 125 0 0 chr1 52981711 52981751 -144213681 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 7 989 906 147 199 11 chr1 52983050 52983236 -144212196 - URR1A DNA MER1_type -1 225 5 7 989 222 37 0 0 chr1 52983552 52983579 -144211853 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 989 257 226 46 35 chr1 52984692 52984779 -144210653 + L1_Rod LINE L1 751 838 -6770 7 989 4879 225 99 16 chr1 52984862 52986936 -144208496 + L1_Rod LINE L1 780 3013 -2834 7 989 738 0 0 0 chr1 52986937 52987019 -144208413 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 7 989 1938 108 100 12 chr1 52987027 52987506 -144207926 + L1VL4 LINE L1 194 714 -5588 7 989 453 116 0 0 chr1 52987508 52987577 -144207855 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 989 487 229 108 27 chr1 52987614 52987762 -144207670 + L1_Mur3 LINE L1 3662 3821 -2059 7 989 335 141 13 0 chr1 52987770 52987848 -144207584 + (TA)n Simple_repeat Simple_repeat 1 79 0 7 989 261 0 0 0 chr1 52987862 52987891 -144207541 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 989 311 184 80 27 chr1 52987897 52988009 -144207423 + L1M3 LINE L1 3878 3995 -2145 7 989 2044 242 41 61 chr1 52988006 52988839 -144206593 + L1_Rod LINE L1 4489 5304 -543 7 989 667 239 96 52 chr1 52989005 52989235 -144206197 + MLT1A0 LTR MaLR 126 365 0 7 989 256 398 9 0 chr1 52989235 52989348 -144206084 - Cheshire DNA MER1_type -2138 282 169 7 989 390 339 105 33 chr1 52989451 52989547 -144205885 + L1M4b LINE L1 1345 1453 -5881 7 989 1935 199 47 5 chr1 52989547 52989951 -144205481 - MTC LTR MaLR 0 421 1 7 989 390 339 105 33 chr1 52989951 52990187 -144205245 + L1M4b LINE L1 1454 1700 -5634 7 989 664 0 52 0 chr1 52990266 52990362 -144205070 + (GA)n Simple_repeat Simple_repeat 2 102 0 7 989 901 181 29 29 chr1 52990666 52990871 -144204561 + Lx7 LINE L1 7023 7227 -469 7 989 28 0 0 0 chr1 52991003 52991031 -144204401 + AT_rich Low_complexity Low_complexity 1 28 0 7 989 267 31 0 0 chr1 52991067 52991099 -144204333 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 989 890 257 112 29 chr1 52991128 52991759 -144203673 + L1MC LINE L1 5100 5790 -543 7 989 651 289 153 25 chr1 52991769 52992095 -144203337 + RLTR9A LTR ERVK 1 368 0 7 989 405 0 0 0 chr1 52992472 52992517 -144202915 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 989 1317 71 33 5 chr1 52992517 52992701 -144202731 + B2_Mm2 SINE B2 4 192 -3 7 989 3363 150 123 56 chr1 52992753 52994104 -144201328 + RMER16-int LTR ERVK 1066 2506 -2900 7 989 3450 153 14 28 chr1 52994103 52994534 -144200898 + RMER16-int LTR ERVK 2634 3058 -2348 7 989 6250 56 19 31 chr1 52994534 52995366 -144200066 - RLTR13B2 LTR ERVK 0 822 1 7 989 3450 153 14 28 chr1 52995366 52995587 -144199845 + RMER16-int LTR ERVK 3059 3277 -2129 7 989 698 234 134 83 chr1 52995970 52996320 -144199112 + RLTR9A LTR ERVK 1 368 0 7 989 15322 45 1 0 chr1 52996353 53000000 -144195432 + L1Md_Gf LINE L1 1 3349 -2537 7 989 19640 21 0 0 chr1 53000000 53002240 -144193192 + L1Md_T LINE L1 3347 5586 -297 1 989 9613 4 0 0 chr1 53002240 53003236 -144192196 + L1Md_T LINE L1 5587 6582 0 1 989 789 329 46 51 chr1 53003264 53003699 -144191733 + L1MC1 LINE L1 5883 6315 -18 2 989 322 325 149 38 chr1 53003725 53004329 -144191103 + L1M5 LINE L1 2444 3114 -3032 3 989 324 0 0 0 chr1 53004687 53004723 -144190709 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 989 995 257 26 26 chr1 53004810 53005074 -144190358 + B4A SINE B4 2 265 -27 5 989 261 118 0 0 chr1 53005082 53005133 -144190299 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 989 226 316 48 42 chr1 53005133 53005298 -144190134 + Charlie23a DNA MER1_type 173 338 -1 7 989 2076 136 126 8 chr1 53005928 53006292 -144189140 + MTB_Mm LTR MaLR 1 407 0 8 989 260 265 0 0 chr1 53007178 53007295 -144188137 + ORR1B1-int LTR MaLR 638 754 -755 9 989 1170 28 0 0 chr1 53007193 53007335 -144188097 + B1_Mus1 SINE Alu 7 148 0 1 989 192 125 0 0 chr1 53008313 53008345 -144187087 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 1 989 333 299 110 8 chr1 53010653 53010771 -144184661 + B4A SINE B4 124 253 -39 1 989 297 0 0 0 chr1 53010774 53010807 -144184625 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 989 1146 229 41 48 chr1 53011469 53011763 -144183669 - B4A SINE B4 0 292 1 1 989 814 197 160 17 chr1 53012414 53012595 -144182837 - B3 SINE B2 -7 209 3 1 989 195 162 0 0 chr1 53012859 53012896 -144182536 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 989 209 200 89 0 chr1 53013500 53013545 -144181887 - MIRb SINE MIR -202 66 18 1 989 403 272 19 0 chr1 53013754 53013857 -144181575 + PB1D10 SINE Alu 1 105 -12 1 989 180 111 0 0 chr1 53013857 53013884 -144181548 + (CAGAA)n Simple_repeat Simple_repeat 4 30 0 1 989 870 272 40 67 chr1 53014715 53015014 -144180418 + B4A SINE B4 2 292 0 2 989 302 67 0 22 chr1 53016004 53016050 -144179382 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 2 989 260 300 54 77 chr1 53016139 53016269 -144179163 + MLT1A0 LTR MaLR 7 133 -232 2 989 1294 267 42 55 chr1 53016274 53016658 -144178774 + MTE2a LTR MaLR 1 379 0 2 989 1527 257 3 41 chr1 53016661 53017050 -144178382 + MTE2a-int LTR MaLR 1 374 -1206 2 989 239 326 62 90 chr1 53017035 53017180 -144178252 + MTE2a-int LTR MaLR 485 625 -955 2 989 2497 259 101 39 chr1 53017166 53017818 -144177614 + MTE2a-int LTR MaLR 744 1438 -142 2 989 1980 135 183 3 chr1 53017818 53018152 -144177280 - ORR1B1 LTR MaLR 0 394 1 2 989 2497 259 101 39 chr1 53018152 53018262 -144177170 + MTE2a-int LTR MaLR 1439 1552 -28 2 989 5316 102 49 3 chr1 53018262 53018997 -144176435 + Lx LINE L1 5883 6651 -3 2 989 933 184 7 0 chr1 53019008 53019155 -144176277 + B1_Mus1 SINE Alu 1 148 0 2 989 1168 246 53 99 chr1 53019187 53019562 -144175870 + MTE2a LTR MaLR 1 358 -21 2 989 368 159 76 13 chr1 53019564 53019652 -144175780 + MTE2a LTR MaLR 296 419 0 2 989 385 302 87 74 chr1 53019652 53019880 -144175552 + MLT1A0 LTR MaLR 134 364 -1 2 989 842 246 52 19 chr1 53020596 53020807 -144174625 - ID_B1 SINE B4 0 224 7 2 989 285 75 0 0 chr1 53020816 53020856 -144174576 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 989 717 248 152 49 chr1 53020860 53021123 -144174309 - B4A SINE B4 0 292 3 3 989 315 0 0 0 chr1 53021186 53021221 -144174211 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 989 240 262 0 16 chr1 53021221 53021283 -144174149 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 989 189 0 0 0 chr1 53021782 53021803 -144173629 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 3 989 408 280 92 120 chr1 53021836 53022128 -144173304 + RMER17C-int LTR ERVK 241 524 -2714 3 989 776 279 9 5 chr1 53022108 53022328 -144173104 + RodERV21-int LTR ERV1 731 951 -4040 3 989 1847 166 187 43 chr1 53022605 53023070 -144172362 + RMER17C-int LTR ERVK 1485 2016 -1222 3 989 904 164 73 0 chr1 53023069 53023246 -144172186 + RMER17C-int LTR ERVK 2170 2359 -879 3 989 868 105 122 27 chr1 53023234 53023381 -144172051 + RMER17C-int LTR ERVK 2532 2692 -546 3 989 2006 154 15 9 chr1 53023379 53023713 -144171719 + RMER17C-int LTR ERVK 2903 3238 0 3 989 1608 206 28 31 chr1 53023716 53024160 -144171272 + RMER17C LTR ERVK 16 441 -517 3 989 285 75 0 0 chr1 53024212 53024252 -144171180 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 3 989 305 379 24 0 chr1 53025310 53025434 -144169998 - L1M5 LINE L1 -1227 4919 4793 3 989 180 0 0 0 chr1 53025540 53025560 -144169872 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 989 1123 267 71 41 chr1 53025771 53026165 -144169267 + MTE-int LTR MaLR 1149 1554 -26 4 989 621 165 0 0 chr1 53026276 53026385 -144169047 - URR1B DNA MER1_type -31 194 86 4 989 234 121 0 0 chr1 53026404 53026437 -144168995 - URR1B DNA MER1_type -192 33 1 4 989 1130 280 41 25 chr1 53026437 53026745 -144168687 + MTEa LTR MaLR 62 374 -5 4 989 896 274 113 21 chr1 53027892 53028107 -144167325 + Lx8 LINE L1 7106 7329 -144 4 989 414 0 0 0 chr1 53028107 53028153 -144167279 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 989 896 274 113 21 chr1 53028153 53028273 -144167159 + Lx8 LINE L1 7330 7472 -1 4 989 230 326 43 0 chr1 53029413 53029505 -144165927 - L1M4 LINE L1 -3178 2968 2873 4 989 222 338 14 14 chr1 53029595 53029667 -144165765 - ID4 SINE ID -11 72 1 4 989 325 291 43 0 chr1 53029672 53029789 -144165643 - L1M2 LINE L1 -3320 2823 2702 4 989 229 327 84 73 chr1 53031363 53031541 -144163891 - MLT1A0 LTR MaLR -179 186 7 4 989 1428 260 46 89 chr1 53031758 53032363 -144163069 + RLTR40 LTR ERVK 19 597 -220 4 989 38675 51 5 12 chr1 53033000 53038192 -144157240 - L1Md_T LINE L1 -12 6988 1841 5 989 1252 48 0 0 chr1 53038192 53038339 -144157093 - B1_Mus2 SINE Alu 0 147 1 5 989 38675 52 0 15 chr1 53038339 53039824 -144155608 - L1Md_T LINE L1 -4046 1840 278 5 989 4677 144 20 4 chr1 53039920 53040723 -144154709 - Lx LINE L1 -1848 4038 3223 5 989 10522 154 20 12 chr1 53040719 53043284 -144152148 + Lx LINE L1 4052 6650 -4 5 989 38 51 0 0 chr1 53044106 53044165 -144151267 + AT_rich Low_complexity Low_complexity 1 59 0 5 989 22 56 0 0 chr1 53044795 53044831 -144150601 + AT_rich Low_complexity Low_complexity 1 36 0 5 989 443 48 0 16 chr1 53045097 53045160 -144150272 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 989 792 197 49 0 chr1 53046079 53046221 -144149211 + B1_Mur4 SINE Alu 2 150 0 5 989 269 315 73 51 chr1 53046784 53046921 -144148511 + LTR86A1 LTR ERVL 247 386 -127 5 989 32 0 0 0 chr1 53047009 53047041 -144148391 + AT_rich Low_complexity Low_complexity 1 32 0 5 989 22 80 0 0 chr1 53047449 53047499 -144147933 + AT_rich Low_complexity Low_complexity 1 50 0 5 989 23 0 0 0 chr1 53047535 53047558 -144147874 + AT_rich Low_complexity Low_complexity 1 23 0 6 989 662 314 33 52 chr1 53047828 53048134 -144147298 - ORR1E LTR MaLR -46 313 14 6 989 2558 217 17 22 chr1 53048337 53048921 -144146511 + L1VL4 LINE L1 189 769 -5533 6 989 1480 148 0 4 chr1 53048937 53049174 -144146258 + L1Md_F2 LINE L1 99 334 -6282 6 989 2838 51 3 3 chr1 53049166 53049521 -144145911 + L1Md_F2 LINE L1 670 1024 -5592 6 989 33025 67 0 10 chr1 53049507 53050021 -144145411 + L1Md_F2 LINE L1 1326 1837 -4046 6 989 1215 68 0 0 chr1 53050021 53050168 -144145264 + B1_Mus2 SINE Alu 1 147 0 6 989 33025 67 0 10 chr1 53050168 53053956 -144141476 + L1Md_F2 LINE L1 1838 5586 -297 6 989 8483 50 12 1 chr1 53053956 53054941 -144140491 + L1Md_F2 LINE L1 5587 6582 0 6 989 21776 85 18 4 chr1 53054941 53057294 -144138138 + L1_Mus4 LINE L1 1116 3493 -421 6 989 246 32 0 0 chr1 53057294 53057325 -144138107 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 6 989 21776 150 36 8 chr1 53057325 53058600 -144136832 + L1_Mus4 LINE L1 3491 4837 -1046 6 989 558 0 0 0 chr1 53058600 53058662 -144136770 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 989 21776 127 56 6 chr1 53058662 53060351 -144135081 + L1_Mus4 LINE L1 4838 6635 -1 6 989 333 68 0 0 chr1 53060352 53060396 -144135036 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 989 734 152 0 14 chr1 53060393 53060533 -144134899 + GA-rich Low_complexity Low_complexity 3 140 0 6 989 582 15 0 0 chr1 53060536 53060603 -144134829 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 7 989 244 313 84 34 chr1 53061057 53061176 -144134256 + MER87 LTR ERV1 403 527 -14 7 989 790 269 15 30 chr1 53061387 53061590 -144133842 + B4A SINE B4 5 204 -88 7 989 378 0 0 0 chr1 53061652 53061694 -144133738 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 989 192 217 0 0 chr1 53061708 53061754 -144133678 + (TGG)n Simple_repeat Simple_repeat 1 46 0 7 989 375 78 0 0 chr1 53061766 53061817 -144133615 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 7 989 23 0 0 0 chr1 53061817 53061840 -144133592 + AT_rich Low_complexity Low_complexity 1 23 0 7 989 686 297 48 117 chr1 53062331 53062739 -144132693 + MTC LTR MaLR 5 362 -17 7 989 4150 283 95 38 chr1 53062739 53064231 -144131201 + MTC-int LTR MaLR 1 1578 -2 7 989 390 321 97 44 chr1 53064319 53064547 -144130885 - LTR16E1 LTR ERVL -14 524 285 7 989 2171 174 47 2 chr1 53064579 53064982 -144130450 + MTC LTR MaLR 1 421 0 7 989 459 151 0 0 chr1 53065472 53065565 -144129867 + GA-rich Low_complexity Low_complexity 2 94 0 7 989 1510 28 50 0 chr1 53065684 53065864 -144129568 + B2_Mm1t SINE B2 1 189 -4 8 989 3394 166 51 14 chr1 53068454 53069100 -144126332 + Lx4B LINE L1 6380 7049 -9 8 989 467 347 29 6 chr1 53069123 53069297 -144126135 + MER5A DNA MER1_type 12 189 0 8 989 29 28 0 0 chr1 53069917 53069953 -144125479 + AT_rich Low_complexity Low_complexity 1 36 0 8 989 427 188 94 0 chr1 53070189 53070274 -144125158 - PB1D10 SINE Alu -1 116 24 8 989 216 295 133 96 chr1 53070201 53070336 -144125096 - ID_B1 SINE B4 -34 190 51 8 989 266 269 12 60 chr1 53070802 53070885 -144124547 + MIR3 SINE MIR 76 154 -54 8 989 313 319 134 14 chr1 53071381 53071597 -144123835 - MIRb SINE MIR -24 244 3 8 989 1709 194 104 8 chr1 53072245 53072619 -144122813 + RLTR11A LTR ERVK 119 528 0 8 989 2111 107 9 6 chr1 53073750 53074090 -144121342 - L1_Mur2 LINE L1 -472 5405 5065 8 989 394 331 16 23 chr1 53074895 53075059 -144120373 - B3A SINE B2 -50 166 4 9 989 497 293 60 27 chr1 53075097 53075339 -144120093 - MLT1A0 LTR MaLR -5 403 109 9 989 207 247 209 12 chr1 53075910 53075996 -144119436 + MIRb SINE MIR 19 121 -147 9 989 754 286 146 45 chr1 53076190 53076669 -144118763 + RMER13A LTR ERVK 95 688 -220 9 989 563 298 0 47 chr1 53077901 53078049 -144117383 - ID_B1 SINE B4 -2 222 82 9 989 448 56 0 40 chr1 53078056 53078130 -144117302 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 9 989 728 152 6 62 chr1 53078231 53078392 -144117040 - L1Md_F2 LINE L1 -2 6580 6429 9 989 35 54 0 0 chr1 53078872 53078928 -144116504 + AT_rich Low_complexity Low_complexity 1 56 0 9 989 323 197 42 0 chr1 53078952 53079023 -144116409 - B1F SINE Alu -8 141 68 9 989 260 259 0 0 chr1 53079085 53079159 -144116273 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 989 240 291 122 37 chr1 53079872 53079954 -144115478 - MIRm SINE MIR -28 248 160 1 989 2471 168 47 16 chr1 53080232 53080722 -144114710 + RLTR16 LTR ERVK 1 505 0 1 989 866 245 75 15 chr1 53081155 53081354 -144114078 + B3 SINE B2 6 216 0 1 989 1645 144 64 64 chr1 53081807 53082118 -144113314 - ORR1B1 LTR MaLR -8 386 76 1 989 8822 114 32 2 chr1 53082123 53083182 -144112250 - Lx3_Mus LINE L1 -4 7005 5907 1 989 441 0 0 0 chr1 53083182 53083231 -144112201 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 123 30485 84 15 15 chr1 53083231 53084337 -144111095 - Lx3_Mus LINE L1 -1103 5906 4803 1 990 387 0 0 0 chr1 53084337 53084380 -144111052 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 990 30485 83 14 16 chr1 53084380 53084569 -144110863 - Lx3_Mus LINE L1 -1084 4802 4654 1 990 1192 69 0 0 chr1 53084569 53084714 -144110718 - B1_Mm SINE Alu -1 146 2 1 990 30485 83 14 16 chr1 53084714 53087047 -144108385 - Lx3_Mus LINE L1 -1233 4653 2292 1 990 234 0 0 0 chr1 53087047 53087073 -144108359 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 990 30485 83 14 16 chr1 53087073 53088093 -144107339 - Lx3_Mus LINE L1 -3595 2291 1270 1 990 366 23 0 0 chr1 53088093 53088136 -144107296 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 990 30485 151 342 25 chr1 53088136 53089093 -144106339 - Lx3_Mus LINE L1 -4617 1269 3 1 990 383 138 16 32 chr1 53089113 53089188 -144106244 - ORR1B1 LTR MaLR -303 91 1 1 990 502 321 74 47 chr1 53090785 53091233 -144104199 + ERVL-E-int LTR ERVL 3716 4175 -1492 1 990 582 317 14 0 chr1 53092405 53092550 -144102882 - B1F2 SINE Alu -2 147 1 1 990 892 137 14 266 chr1 53092593 53092871 -144102561 - B3 SINE B2 -7 209 2 1 990 600 193 17 8 chr1 53092938 53093058 -144102374 - B3 SINE B2 -86 130 10 1 990 3463 63 9 2 chr1 53093059 53093503 -144101929 + L1_Mus1 LINE L1 6121 6567 0 1 990 213 152 22 0 chr1 53093552 53093598 -144101834 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 990 213 300 0 16 chr1 53094570 53094631 -144100801 + L2a LINE L2 3364 3423 -3 1 990 425 313 70 25 chr1 53094732 53094932 -144100500 + L2c LINE L2 3087 3295 -92 1 990 25 0 0 0 chr1 53094938 53094963 -144100469 + AT_rich Low_complexity Low_complexity 1 25 0 1 990 278 405 0 0 chr1 53095397 53095513 -144099919 - Tigger5 DNA MER2_type 0 2406 2291 1 990 294 299 45 11 chr1 53095520 53095608 -144099824 - Tigger5 DNA MER2_type -2199 207 117 1 990 532 271 35 126 chr1 53096090 53096407 -144099025 + B4A SINE B4 5 292 0 1 990 6097 67 26 5 chr1 53097552 53098396 -144097036 + L1_Mus2 LINE L1 5704 6565 -1 1 990 207 0 0 0 chr1 53098578 53098601 -144096831 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 990 15357 87 30 8 chr1 53098601 53101898 -144093534 - Lx3_Mus LINE L1 -17 6992 3617 1 990 241 341 48 70 chr1 53101899 53102085 -144093347 - ORR1D2 LTR MaLR -183 187 6 1 990 262 318 30 0 chr1 53102481 53102547 -144092885 + MER20 DNA MER1_type 3 70 -149 1 990 698 284 29 1 chr1 53102568 53102756 -144092676 - B3A SINE B2 -15 201 5 1 990 25 0 0 0 chr1 53102867 53102892 -144092540 + AT_rich Low_complexity Low_complexity 1 25 0 1 990 321 339 79 20 chr1 53103288 53103541 -144091891 + L1MC LINE L1 2465 2732 -3414 1 990 434 322 7 65 chr1 53103707 53103860 -144091572 - ID_B1 SINE B4 0 224 81 1 990 28 48 0 0 chr1 53104124 53104166 -144091266 + AT_rich Low_complexity Low_complexity 1 42 0 1 990 280 353 0 45 chr1 53104286 53104375 -144091057 + B1F1 SINE Alu 4 88 -61 1 990 192 65 0 80 chr1 53104380 53104430 -144091002 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 990 570 271 44 18 chr1 53106836 53107000 -144088432 - ID_B1 SINE B4 -41 251 84 1 990 739 150 25 22 chr1 53107113 53107314 -144088118 + RMER19A LTR ERVK 2 261 -476 1 990 6840 71 9 2 chr1 53107317 53108263 -144087169 - L1_Mus3 LINE L1 -6 6632 5680 1 990 1458 204 228 17 chr1 53108269 53108677 -144086755 + RMER19A LTR ERVK 244 737 0 1 990 245 248 297 0 chr1 53109821 53109922 -144085510 - MIRb SINE MIR -11 257 127 1 990 4477 121 53 3 chr1 53110183 53110880 -144084552 + Lx3B LINE L1 6242 6973 0 1 990 309 172 11 22 chr1 53111320 53111409 -144084023 + Lx9 LINE L1 7556 7643 -1 1 990 359 362 71 0 chr1 53112019 53112146 -144083286 + B1F SINE Alu 1 136 -13 1 990 237 391 70 16 chr1 53113506 53113693 -144081739 + Charlie1 DNA MER1_type 14 210 -2571 1 990 662 213 98 3 chr1 53113831 53113992 -144081440 + B3A SINE B2 1 179 -37 1 990 304 103 35 0 chr1 53113995 53114053 -144081379 + (TCTCCC)n Simple_repeat Simple_repeat 3 62 0 1 990 24 53 0 0 chr1 53114073 53114111 -144081321 + AT_rich Low_complexity Low_complexity 1 38 0 1 990 737 175 262 6 chr1 53114195 53114367 -144081065 + B3 SINE B2 1 216 0 1 990 781 44 18 0 chr1 53115707 53115821 -144079611 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 990 303 308 52 26 chr1 53116653 53116791 -144078641 - MIRb SINE MIR -43 165 24 1 990 198 0 0 0 chr1 53117759 53117781 -144077651 + (A)n Simple_repeat Simple_repeat 1 22 0 1 990 23 33 0 0 chr1 53121548 53121578 -144073854 + AT_rich Low_complexity Low_complexity 1 30 0 1 990 31 0 0 0 chr1 53121837 53121868 -144073564 + AT_rich Low_complexity Low_complexity 1 31 0 1 990 261 280 13 51 chr1 53122404 53122483 -144072949 - ID2 SINE ID -6 77 2 1 990 219 36 0 0 chr1 53122993 53123021 -144072411 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 990 25 0 0 0 chr1 53124955 53124980 -144070452 + AT_rich Low_complexity Low_complexity 1 25 0 1 990 333 0 0 0 chr1 53127185 53127222 -144068210 + (T)n Simple_repeat Simple_repeat 1 37 0 1 990 1159 82 0 0 chr1 53127222 53127369 -144068063 - B1_Mus1 SINE Alu 0 148 2 1 990 199 340 74 11 chr1 53127893 53127988 -144067444 - MIRc SINE MIR -90 178 78 1 990 319 0 0 61 chr1 53128150 53128199 -144067233 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 990 370 281 263 25 chr1 53128568 53128846 -144066586 + MER57C2 LTR ERV1 1 367 -67 1 990 908 259 10 10 chr1 53128979 53129178 -144066254 - B3 SINE B2 -7 209 11 1 990 24 53 0 0 chr1 53129238 53129276 -144066156 + AT_rich Low_complexity Low_complexity 1 38 0 1 990 220 288 17 0 chr1 53129276 53129335 -144066097 + (TATG)n Simple_repeat Simple_repeat 4 63 0 1 990 488 311 113 13 chr1 53129340 53129571 -144065861 - MLT1L LTR MaLR 0 610 357 1 990 725 200 7 29 chr1 53129737 53129876 -144065556 + B1_Mur3 SINE Alu 3 138 -11 1 990 243 0 0 0 chr1 53129884 53129911 -144065521 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 990 375 287 123 30 chr1 53129994 53130318 -144065114 - L1MA5 LINE L1 -455 5845 5478 1 990 812 71 0 9 chr1 53131283 53131396 -144064036 + B1_Mm SINE Alu 36 147 0 1 990 270 95 0 0 chr1 53131396 53131438 -144063994 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 1 990 25 0 0 0 chr1 53132071 53132096 -144063336 + AT_rich Low_complexity Low_complexity 1 25 0 1 990 341 22 22 0 chr1 53133829 53133875 -144061557 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 990 312 123 0 0 chr1 53133875 53133899 -144061533 + (T)n Simple_repeat Simple_repeat 1 24 0 1 990 1213 61 0 0 chr1 53133899 53134046 -144061386 - B1_Mus2 SINE Alu 0 147 1 1 990 312 123 0 0 chr1 53134046 53134078 -144061354 + (T)n Simple_repeat Simple_repeat 1 32 0 1 990 4691 40 31 0 chr1 53135421 53135994 -144059438 + L1Md_T LINE L1 5990 6580 -2 1 990 1331 48 11 5 chr1 53136146 53136334 -144059098 - L1_Mus3 LINE L1 -2 6636 6448 1 990 284 284 55 0 chr1 53136613 53136722 -144058710 - Lx7 LINE L1 0 7696 7582 1 990 327 304 51 67 chr1 53137162 53137592 -144057840 + L1ME1 LINE L1 5552 5974 -205 1 990 2330 277 112 29 chr1 53137595 53137945 -144057487 + Lx8 LINE L1 6455 6850 -623 1 990 1017 47 0 0 chr1 53137945 53138072 -144057360 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1 990 2330 277 112 29 chr1 53138072 53138654 -144056778 + Lx8 LINE L1 6851 7463 -10 1 990 396 0 0 0 chr1 53138802 53138846 -144056586 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 990 758 251 24 14 chr1 53139366 53139576 -144055856 + Lx8 LINE L1 6232 6443 -1030 1 990 1539 289 59 8 chr1 53139573 53140083 -144055349 + Lx8 LINE L1 6637 7172 -301 1 990 328 217 0 0 chr1 53140143 53140203 -144055229 + RMER15 LTR ERVL 403 462 -113 1 990 1482 6 0 0 chr1 53140710 53140877 -144054555 + (GGGAGA)n Simple_repeat Simple_repeat 2 168 0 1 990 243 0 0 0 chr1 53141332 53141359 -144054073 + (A)n Simple_repeat Simple_repeat 1 27 0 1 990 884 69 75 23 chr1 53141573 53141706 -144053726 - B1_Mus1 SINE Alu 0 148 9 1 990 416 285 96 85 chr1 53141611 53141799 -144053633 - MT2B2 LTR ERVL -327 257 68 1 990 206 188 15 15 chr1 53141837 53141902 -144053530 + (TTAAA)n Simple_repeat Simple_repeat 3 67 0 1 990 279 287 168 24 chr1 53142090 53142215 -144053217 - LFSINE_Vert SINE SINE -108 351 209 1 990 390 320 105 0 chr1 53142304 53142457 -144052975 - LFSINE_Vert SINE SINE -279 180 12 1 990 22 35 0 0 chr1 53142825 53142854 -144052578 + AT_rich Low_complexity Low_complexity 1 29 0 1 990 232 208 56 0 chr1 53144342 53144414 -144051018 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 990 554 309 0 20 chr1 53144492 53144644 -144050788 + B1F SINE Alu 1 149 0 1 990 271 210 16 0 chr1 53146226 53146288 -144049144 + Lx9 LINE L1 7414 7476 -168 1 990 240 237 102 51 chr1 53146681 53146779 -144048653 + PB1D7 SINE Alu 18 120 0 1 990 564 106 0 0 chr1 53148614 53148708 -144046724 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 990 297 0 0 0 chr1 53149333 53149366 -144046066 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 990 800 169 0 154 chr1 53149449 53149624 -144045808 + B1_Mur1 SINE Alu 2 149 0 1 990 182 300 20 20 chr1 53151430 53151481 -144043951 - MIR SINE MIR -145 117 67 1 990 23 0 0 0 chr1 53151486 53151509 -144043923 + AT_rich Low_complexity Low_complexity 1 23 0 1 990 227 238 24 0 chr1 53151628 53151670 -144043762 + RSINE1 SINE B4 3 45 -120 1 990 201 246 14 0 chr1 53151967 53151982 -144043450 + A-rich Low_complexity Low_complexity 4 18 0 1 990 3811 44 0 0 chr1 53151982 53152490 -144042942 + L1Md_T LINE L1 6128 6582 0 1 990 11699 66 14 0 chr1 53152494 53153079 -144042353 + L1Md_F2 LINE L1 3955 4562 -1321 2 990 294 50 0 0 chr1 53153079 53153119 -144042313 + (CAATT)n Simple_repeat Simple_repeat 5 44 0 2 990 11699 66 14 0 chr1 53153119 53154142 -144041290 + L1Md_F2 LINE L1 4563 5585 -298 2 990 8279 38 2 0 chr1 53154142 53155134 -144040298 + L1Md_F2 LINE L1 5587 6580 -2 2 990 458 162 108 54 chr1 53155143 53155254 -144040178 + Lx5 LINE L1 6696 6812 -238 2 990 415 202 22 0 chr1 53155266 53155355 -144040077 + L1MB3 LINE L1 6040 6130 -53 2 990 385 258 54 90 chr1 53155836 53155902 -144039530 + MT2B LTR ERVL 98 157 -444 2 990 785 201 0 0 chr1 53155902 53156046 -144039386 + B1_Mus2 SINE Alu 3 146 -1 2 990 21 0 0 0 chr1 53156124 53156145 -144039287 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 1132 310 86 33 chr1 53156362 53156906 -144038526 + Lx5 LINE L1 6294 6866 -184 2 990 1217 277 114 18 chr1 53156999 53157532 -144037900 + RMER1A Other Other 22 477 -589 2 990 5249 51 5 0 chr1 53157537 53158183 -144037249 + L1Md_F2 LINE L1 5932 6580 -2 2 990 1379 259 72 57 chr1 53158537 53158964 -144036468 + RMER19C LTR ERVK 218 610 -1 2 990 1173 272 69 54 chr1 53159033 53159419 -144036013 - MTE2a LTR MaLR -14 405 12 2 990 628 266 58 17 chr1 53159491 53159663 -144035769 + MTE2b LTR MaLR 195 373 -6 2 990 247 169 29 71 chr1 53159664 53159734 -144035698 + L1M4c LINE L1 1486 1585 -5319 2 990 625 103 9 18 chr1 53159779 53159888 -144035544 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 2 990 1085 94 6 0 chr1 53159900 53160060 -144035372 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 2 990 726 12 0 0 chr1 53160182 53160265 -144035167 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 990 452 245 228 17 chr1 53160265 53160506 -144034926 + L1M4c LINE L1 1742 2033 -4975 2 990 227 386 127 25 chr1 53160535 53160692 -144034740 - MLT1E2 LTR MaLR -236 276 104 2 990 1326 78 0 0 chr1 53160790 53160970 -144034462 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 990 1025 106 0 0 chr1 53160976 53161108 -144034324 - B1_Mus1 SINE Alu -15 133 2 2 990 416 325 123 12 chr1 53161583 53161826 -144033606 - MLT1E2-int LTR MaLR -646 741 472 2 990 991 163 29 0 chr1 53161902 53162074 -144033358 + MLT1J-int LTR MaLR 241 417 -970 2 990 590 285 92 42 chr1 53162734 53162935 -144032497 - L1MA4 LINE L1 -375 5925 5706 2 990 1204 55 0 0 chr1 53162935 53163081 -144032351 + B1_Mus1 SINE Alu 1 146 -2 2 990 180 0 0 0 chr1 53163081 53163101 -144032331 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 990 590 285 92 42 chr1 53163101 53163301 -144032131 - L1MA4 LINE L1 -595 5705 5504 2 990 646 354 73 3 chr1 53163448 53163765 -144031667 - MLT1E2 LTR MaLR 0 627 289 2 990 22 35 0 0 chr1 53164501 53164530 -144030902 + AT_rich Low_complexity Low_complexity 1 29 0 2 990 2627 111 43 46 chr1 53164791 53165252 -144030180 - Lx3A LINE L1 -5 6976 6517 2 990 1218 271 127 7 chr1 53165254 53165909 -144029523 + L1MA5 LINE L1 5272 6007 -164 2 990 1345 239 40 0 chr1 53165948 53166296 -144029136 - MLT1A0 LTR MaLR -3 362 1 2 990 1559 213 6 84 chr1 53167411 53167877 -144027555 + RLTR42-int LTR ERVK 1105 1534 -3988 2 990 352 191 0 0 chr1 53167944 53168012 -144027420 + RLTR42-int LTR ERVK 1539 1606 -3916 2 990 1088 157 56 44 chr1 53168228 53168547 -144026885 + RLTR42-int LTR ERVK 1987 2309 -3213 2 990 2675 80 82 5 chr1 53168630 53169021 -144026411 + BGLII LTR ERVK 1 421 0 2 990 376 243 107 7 chr1 53169249 53169398 -144026034 + RLTR42-int LTR ERVK 2713 2876 -3261 2 990 31644 78 7 14 chr1 53169987 53171129 -144024303 - L1Md_F2 LINE L1 -15 6567 5440 2 990 3122 66 2 8 chr1 53171129 53171527 -144023905 - MTA_Mm LTR MaLR 0 396 1 2 990 31644 84 7 1 chr1 53171527 53176697 -144018735 - L1Md_F2 LINE L1 -444 5439 242 2 990 252 200 185 0 chr1 53176697 53176762 -144018670 - B3 SINE B2 -139 77 1 2 990 2565 142 29 5 chr1 53177916 53178325 -144017107 + MTC LTR MaLR 3 421 0 2 990 28 0 0 0 chr1 53178533 53178561 -144016871 + AT_rich Low_complexity Low_complexity 1 28 0 2 990 194 116 23 0 chr1 53178785 53178828 -144016604 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 990 1087 182 48 48 chr1 53178930 53179178 -144016254 - MTB_Mm LTR MaLR -159 248 1 2 990 27 29 0 0 chr1 53179704 53179738 -144015694 + AT_rich Low_complexity Low_complexity 1 34 0 2 990 315 0 0 0 chr1 53179781 53179816 -144015616 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 990 30 0 0 0 chr1 53180521 53180551 -144014881 + AT_rich Low_complexity Low_complexity 1 30 0 2 990 1834 180 104 22 chr1 53180836 53181239 -144014193 - Lx5 LINE L1 -7 7043 6608 2 990 208 329 53 0 chr1 53182305 53182381 -144013051 - MIR SINE MIR -34 228 149 2 990 468 239 0 44 chr1 53182453 53182567 -144012865 + PB1D9 SINE Alu 2 110 -10 2 990 226 173 33 100 chr1 53182894 53182984 -144012448 - Lx4B LINE L1 -49 7009 6926 2 990 276 53 0 0 chr1 53183041 53183079 -144012353 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 2 990 15047 86 21 6 chr1 53183172 53186430 -144009002 - Lx3A LINE L1 0 6981 3670 2 990 2935 33 0 59 chr1 53186430 53186820 -144008612 - IAPLTR1_Mm LTR ERVK 0 367 1 2 990 9570 26 3 1 chr1 53186824 53187974 -144007458 - IAPEz-int LTR ERVK -4 6477 5326 2 990 780 11 0 0 chr1 53187974 53188065 -144007367 - IAPEz-int LTR ERVK -1725 4756 4666 2 990 25855 29 32 3 chr1 53188055 53191259 -144004173 - IAPEz-int LTR ERVK -3175 3306 8 2 990 2935 33 0 59 chr1 53191259 53191649 -144003783 - IAPLTR1_Mm LTR ERVK 0 367 1 2 990 14772 77 48 28 chr1 53191652 53193677 -144001755 - Lx3A LINE L1 -2214 3672 1561 2 990 225 0 0 0 chr1 53193677 53193702 -144001730 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 990 14772 77 48 28 chr1 53193702 53193736 -144001696 - Lx3A LINE L1 -4326 1560 1546 2 990 3696 56 0 8 chr1 53193736 53194208 -144001224 - L1Md_F2 LINE L1 0 6582 6115 2 990 14772 98 94 19 chr1 53194208 53195095 -144000337 - Lx3A LINE L1 -4341 1545 613 2 990 790 215 138 8 chr1 53195099 53195338 -144000094 - Lx3A LINE L1 -6672 312 43 2 990 192 338 87 27 chr1 53195903 53196052 -143999380 - MIR SINE MIR -61 201 44 2 990 21 0 0 0 chr1 53196334 53196355 -143999077 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 371 299 37 0 chr1 53196682 53196789 -143998643 - Tigger5 DNA MER2_type -4 2402 2292 2 990 285 353 243 0 chr1 53196791 53196964 -143998468 - Tigger5 DNA MER2_type -2171 235 21 2 990 243 0 0 0 chr1 53197070 53197097 -143998335 + (A)n Simple_repeat Simple_repeat 1 27 0 2 990 182 33 67 0 chr1 53197107 53197137 -143998295 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 990 1770 162 112 29 chr1 53197325 53197674 -143997758 + ORR1C1 LTR MaLR 1 378 0 2 990 342 0 0 0 chr1 53197980 53198018 -143997414 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 990 342 0 0 0 chr1 53198018 53198055 -143997377 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 990 507 286 247 27 chr1 53198076 53198299 -143997133 - B4 SINE B4 -20 272 1 2 990 980 266 107 13 chr1 53198647 53199082 -143996350 + Lx8 LINE L1 6773 7290 -183 2 990 3052 202 74 63 chr1 53199082 53199875 -143995557 + RLTR40 LTR ERVK 1 802 -15 2 990 634 291 96 51 chr1 53199938 53200240 -143995192 - MLT1F1 LTR MaLR -35 619 214 2 990 213 39 0 0 chr1 53200306 53200332 -143995100 + (A)n Simple_repeat Simple_repeat 1 26 0 2 990 349 323 81 54 chr1 53200345 53200643 -143994789 - L1ME1 LINE L1 -98 6081 5776 2 990 887 144 79 5 chr1 53200656 53200859 -143994573 - Lx9 LINE L1 -3 7641 7424 2 990 309 270 156 16 chr1 53200872 53201000 -143994432 + Cheshire DNA MER1_type 2275 2420 0 2 990 21 71 0 0 chr1 53201283 53201325 -143994107 + AT_rich Low_complexity Low_complexity 1 42 0 2 990 251 255 36 18 chr1 53202426 53202443 -143992989 + ZP3AR Satellite Satellite 28 82 -128 2 990 255 135 0 0 chr1 53202443 53202480 -143992952 + ID4_ SINE ID 4 40 -43 2 990 3412 57 2 7 chr1 53204020 53204463 -143990969 - L1_Mus2 LINE L1 0 6566 6126 2 990 226 300 83 28 chr1 53204643 53204715 -143990717 + B3A SINE B2 2 77 -121 2 990 35 54 0 0 chr1 53204777 53204833 -143990599 + AT_rich Low_complexity Low_complexity 1 56 0 2 990 577 269 14 47 chr1 53204878 53205026 -143990406 - ID_B1 SINE B4 -3 221 79 2 990 846 245 43 0 chr1 53205300 53205488 -143989944 - B3 SINE B2 -19 197 2 2 990 532 311 11 0 chr1 53206408 53206585 -143988847 - B3A SINE B2 -16 182 4 2 990 249 325 0 36 chr1 53206618 53206701 -143988731 + ID4_ SINE ID 4 83 0 2 990 25 51 0 0 chr1 53206706 53206745 -143988687 + AT_rich Low_complexity Low_complexity 1 39 0 2 990 777 314 60 33 chr1 53206745 53207110 -143988322 + MER82 DNA MER2_type 251 625 -28 2 990 1371 269 57 9 chr1 53207124 53207392 -143988040 + Lx7 LINE L1 6525 6792 -904 2 990 1924 209 30 186 chr1 53207392 53208116 -143987316 - RMER19C LTR ERVK 0 611 1 2 990 1371 269 57 9 chr1 53208116 53208271 -143987161 + Lx7 LINE L1 6793 6967 -729 2 990 692 87 0 0 chr1 53208270 53208362 -143987070 - Lx3B LINE L1 -1228 5745 5654 2 990 4751 79 11 3 chr1 53208373 53209095 -143986337 + L1_Mur1 LINE L1 1926 2653 -3233 2 990 267 261 104 0 chr1 53209202 53209336 -143986096 - L1M4 LINE L1 -2622 3524 3377 2 990 1051 271 73 46 chr1 53209369 53209480 -143985952 + L1MA6 LINE L1 5262 5373 -927 2 990 962 47 0 0 chr1 53209480 53209608 -143985824 + L1Md_F2 LINE L1 6443 6570 -12 2 990 1051 271 73 46 chr1 53209608 53210129 -143985303 + L1MA6 LINE L1 5374 5911 -389 2 990 740 65 219 0 chr1 53210157 53210280 -143985152 + B2_Mm2 SINE B2 36 185 -10 2 990 490 286 35 0 chr1 53210383 53210582 -143984850 + L1MA6 LINE L1 6094 6299 -1 2 990 338 285 16 31 chr1 53210582 53210709 -143984723 + PB1 SINE Alu 1 125 -2 2 990 357 242 44 29 chr1 53210710 53210846 -143984586 + L1MD LINE L1 2211 2348 -3798 2 990 237 242 181 0 chr1 53210925 53211074 -143984358 + L1MD LINE L1 3439 3614 -2532 2 990 240 35 0 0 chr1 53211097 53211126 -143984306 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 990 324 0 0 0 chr1 53211126 53211162 -143984270 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 990 983 147 6 0 chr1 53211162 53211339 -143984093 + GA-rich Low_complexity Low_complexity 3 180 0 2 990 286 247 52 0 chr1 53211411 53211508 -143983924 + L1MD1 LINE L1 6136 6237 -5 2 990 231 272 221 32 chr1 53211653 53211748 -143983684 + PB1D10 SINE Alu 5 117 0 2 990 477 220 214 28 chr1 53211812 53211994 -143983438 + B4A SINE B4 15 230 -62 2 990 337 329 110 23 chr1 53211994 53212293 -143983139 + Lx8 LINE L1 7114 7438 -35 2 990 320 244 85 0 chr1 53212307 53212389 -143983043 + B4A SINE B4 204 292 0 2 990 293 223 0 11 chr1 53212389 53212484 -143982948 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 990 1347 62 0 0 chr1 53212645 53212886 -143982546 + (GGAA)n Simple_repeat Simple_repeat 1 241 0 2 990 1247 41 0 0 chr1 53213948 53214095 -143981337 + B1_Mm SINE Alu 1 147 0 2 991 24 0 0 0 chr1 53215243 53215267 -143980165 + AT_rich Low_complexity Low_complexity 1 24 0 2 991 32 0 0 0 chr1 53215757 53215789 -143979643 + AT_rich Low_complexity Low_complexity 1 32 0 2 991 922 189 5 99 chr1 53215789 53216012 -143979420 - RMER5 LTR ERV1 -315 219 18 2 991 2385 108 11 16 chr1 53216132 53216499 -143978933 - L1_Mus3 LINE L1 0 6638 6274 3 991 474 266 65 10 chr1 53216782 53217089 -143978343 + L1M2 LINE L1 2891 3214 -2929 3 991 1156 157 45 0 chr1 53217094 53217292 -143978140 - ORR1A4 LTR MaLR -75 254 48 3 991 3039 71 14 30 chr1 53217309 53217744 -143977688 + L1_Mus3 LINE L1 6206 6633 -5 3 991 5719 159 63 20 chr1 53217747 53217795 -143977637 - MERVL_2A-int LTR ERVL -3824 1937 1896 3 991 2082 146 25 42 chr1 53217795 53218196 -143977236 + ORR1B1 LTR MaLR 1 394 0 3 991 5719 159 63 20 chr1 53218196 53219266 -143976166 - MERVL_2A-int LTR ERVL -3866 1895 771 3 991 245 221 99 59 chr1 53219284 53219381 -143976051 + B4A SINE B4 217 292 0 3 991 23 0 0 0 chr1 53219787 53219810 -143975622 + AT_rich Low_complexity Low_complexity 1 23 0 3 991 27 0 0 0 chr1 53219878 53219905 -143975527 + AT_rich Low_complexity Low_complexity 1 27 0 3 991 1785 185 15 106 chr1 53220322 53220914 -143974518 + L1_Mur3 LINE L1 2928 3465 -2415 3 991 3903 69 4 4 chr1 53220917 53221429 -143974003 + L1_Mus2 LINE L1 6047 6558 -8 3 991 261 32 0 0 chr1 53221463 53221494 -143973938 + L1Md_F2 LINE L1 5556 5586 -297 3 991 7998 45 7 2 chr1 53221494 53222485 -143972947 + L1Md_F2 LINE L1 5587 6582 0 3 991 4128 204 81 14 chr1 53222485 53223667 -143971765 + L1_Rod LINE L1 1764 3024 -2823 3 991 1843 102 25 4 chr1 53223668 53223945 -143971487 + Lx2 LINE L1 6710 6992 -5 3 991 918 152 0 0 chr1 53223948 53224125 -143971307 + GA-rich Low_complexity Low_complexity 1 177 0 3 991 1655 42 0 0 chr1 53224134 53224327 -143971105 + B2_Mm1t SINE B2 1 193 0 3 991 234 30 0 0 chr1 53224503 53224536 -143970896 + B3 SINE B2 1 33 -183 3 991 3655 201 57 47 chr1 53224561 53224820 -143970612 + L1_Rod LINE L1 3711 3989 -1858 3 991 1162 50 0 0 chr1 53224820 53224960 -143970472 + B1_Mus1 SINE Alu 1 140 -8 3 991 360 0 0 0 chr1 53224960 53225000 -143970432 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 991 3655 201 57 47 chr1 53225000 53225635 -143969797 + L1_Rod LINE L1 3990 4622 -1225 3 991 234 0 0 0 chr1 53225635 53225661 -143969771 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 991 3655 201 57 47 chr1 53225661 53225861 -143969571 + L1_Rod LINE L1 4623 4815 -1032 3 991 189 74 0 0 chr1 53225878 53225905 -143969527 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 991 375 105 0 0 chr1 53225922 53225979 -143969453 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 3 991 1581 193 123 7 chr1 53225981 53226403 -143969029 + Lx9 LINE L1 7153 7623 -21 3 991 27 49 0 0 chr1 53226533 53226574 -143968858 + AT_rich Low_complexity Low_complexity 1 41 0 3 991 28 0 0 0 chr1 53226787 53226815 -143968617 + AT_rich Low_complexity Low_complexity 1 28 0 3 991 21 0 0 0 chr1 53227305 53227326 -143968106 + AT_rich Low_complexity Low_complexity 1 21 0 3 991 326 42 0 20 chr1 53227359 53227408 -143968024 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 991 897 136 218 21 chr1 53227605 53227793 -143967639 + URR1B DNA MER1_type 1 225 0 3 991 184 292 92 0 chr1 53227984 53228049 -143967383 - MIRb SINE MIR -75 193 123 3 991 236 189 0 0 chr1 53228256 53228309 -143967123 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 991 399 215 0 0 chr1 53228575 53228696 -143966736 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 991 6014 103 28 0 chr1 53228928 53229906 -143965526 + Lx3_Mus LINE L1 2027 3031 -2855 3 991 14824 82 14 10 chr1 53229898 53233014 -143962418 + Lx3_Mus LINE L1 3736 6876 -133 3 991 2986 40 0 0 chr1 53233014 53233360 -143962072 - ORR1A1 LTR MaLR 0 346 1 3 991 8965 93 34 16 chr1 53233360 53233494 -143961938 + Lx3_Mus LINE L1 6877 7004 -5 3 991 1055 68 0 0 chr1 53233516 53233649 -143961783 + B1_Mm SINE Alu 1 133 -14 3 991 225 163 47 0 chr1 53233686 53233729 -143961703 + (CATA)n Simple_repeat Simple_repeat 4 48 0 3 991 321 266 25 0 chr1 53233746 53233825 -143961607 + ID4_ SINE ID 3 83 0 3 991 236 273 0 0 chr1 53234316 53234371 -143961061 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 3 991 306 0 0 0 chr1 53234450 53234484 -143960948 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 991 262 333 38 53 chr1 53234837 53234970 -143960462 + L2a LINE L2 3295 3425 -1 3 991 191 298 26 80 chr1 53234985 53235098 -143960334 - L2c LINE L2 -21 3366 3260 3 991 378 150 62 47 chr1 53235678 53236001 -143959431 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 3 991 278 178 38 32 chr1 53236016 53236173 -143959259 + (TGGA)n Simple_repeat Simple_repeat 2 159 0 3 991 309 326 73 60 chr1 53236173 53236323 -143959109 + HAL1-3A_ME LINE L1 2285 2436 -422 3 991 187 179 56 31 chr1 53236366 53236527 -143958905 + (TGGA)n Simple_repeat Simple_repeat 2 166 0 3 991 315 301 127 42 chr1 53236527 53236669 -143958763 + HAL1-3A_ME LINE L1 2285 2438 -420 3 991 373 180 61 34 chr1 53236674 53237009 -143958423 + (TGGA)n Simple_repeat Simple_repeat 1 344 0 3 991 257 175 47 33 chr1 53237108 53237331 -143958101 + (TGGA)n Simple_repeat Simple_repeat 1 226 0 3 991 1356 99 5 0 chr1 53238037 53238229 -143957203 - B2_Mm1t SINE B2 0 193 1 3 991 207 0 0 0 chr1 53239085 53239108 -143956324 + (A)n Simple_repeat Simple_repeat 1 23 0 3 991 438 183 0 68 chr1 53240038 53240126 -143955306 - B1_Mur2 SINE Alu 0 149 68 3 991 244 319 154 14 chr1 53241238 53241381 -143954051 + MER5A1 DNA MER1_type 1 163 -3 3 991 244 266 16 0 chr1 53241624 53241688 -143953744 + GA-rich Low_complexity Low_complexity 1 65 0 3 991 180 0 0 0 chr1 53242553 53242573 -143952859 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 991 309 331 38 59 chr1 53242669 53242855 -143952577 + MER5A DNA MER1_type 2 183 -6 3 991 310 210 84 24 chr1 53243082 53243165 -143952267 - PB1D10 SINE Alu -6 111 24 3 991 223 312 0 111 chr1 53243499 53243571 -143951861 - ID4 SINE ID -11 72 9 3 991 638 154 64 16 chr1 53243863 53243988 -143951444 + B1_Mur4 SINE Alu 1 131 -19 3 991 211 248 75 177 chr1 53245031 53245178 -143950254 + B4A SINE B4 2 133 -159 3 991 557 52 13 0 chr1 53245278 53245355 -143950077 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 991 232 122 0 24 chr1 53246424 53246466 -143948966 - MIRm SINE MIR 0 276 236 3 991 340 203 0 28 chr1 53247703 53247774 -143947658 + PB1D7 SINE Alu 52 120 0 3 991 511 202 25 34 chr1 53247904 53248022 -143947410 - B1_Mur4 SINE Alu 0 150 34 3 991 1142 55 7 14 chr1 53248517 53248665 -143946767 - B1_Mus2 SINE Alu 0 147 1 3 991 471 194 87 107 chr1 53248721 53248871 -143946561 + B1_Mur1 SINE Alu 3 149 0 3 991 260 326 38 8 chr1 53250340 53250473 -143944959 - B1F SINE Alu -12 137 1 3 991 302 316 149 5 chr1 53250574 53250768 -143944664 + MIR SINE MIR 41 262 0 3 991 295 238 135 90 chr1 53250967 53250984 -143944448 - B3 SINE B2 0 216 202 3 991 201 74 0 0 chr1 53250984 53251011 -143944421 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 991 392 225 62 37 chr1 53251011 53251167 -143944265 - B3 SINE B2 -15 201 1 3 991 27 73 0 0 chr1 53254170 53254225 -143941207 + AT_rich Low_complexity Low_complexity 1 55 0 3 991 23 33 0 0 chr1 53254873 53254903 -143940529 + AT_rich Low_complexity Low_complexity 1 30 0 3 991 318 304 176 79 chr1 53255790 53256288 -143939144 + L1MD LINE L1 2230 2822 -3324 3 991 260 307 4 0 chr1 53256460 53256567 -143938865 + L1ME2 LINE L1 5910 6018 -426 3 991 258 173 20 235 chr1 53257137 53257235 -143938197 + ID4_ SINE ID 3 79 -4 3 991 377 182 20 93 chr1 53257299 53257450 -143937982 - Lx3B LINE L1 -832 6141 6002 3 991 4996 113 8 18 chr1 53257450 53258235 -143937197 + Lx3B LINE L1 6193 6969 -4 3 991 39 68 0 0 chr1 53258244 53258318 -143937114 + AT_rich Low_complexity Low_complexity 1 74 0 3 991 1619 206 163 24 chr1 53259529 53260032 -143935400 + Lx7 LINE L1 6847 7419 -277 3 991 244 194 141 10 chr1 53260114 53260213 -143935219 + Lx7 LINE L1 7585 7696 0 3 991 180 324 54 0 chr1 53260890 53260964 -143934468 - MIRb SINE MIR -25 243 166 3 991 763 284 11 28 chr1 53261488 53261669 -143933763 + B3 SINE B2 1 178 -38 3 991 195 42 0 0 chr1 53261739 53261763 -143933669 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 991 486 257 121 16 chr1 53262561 53262751 -143932681 + RMER15 LTR ERVL 353 562 -13 3 991 606 143 57 0 chr1 53264624 53264729 -143930703 + B3 SINE B2 101 211 -5 3 991 442 134 0 12 chr1 53265021 53265104 -143930328 - Lx LINE L1 -12 6642 6561 3 991 288 250 130 72 chr1 53267136 53267274 -143928158 + B1_Mur2 SINE Alu 3 148 -1 3 991 26 0 0 0 chr1 53269345 53269371 -143926061 + AT_rich Low_complexity Low_complexity 1 26 0 3 991 857 68 127 0 chr1 53269658 53269776 -143925656 + B1_Mus2 SINE Alu 2 134 -13 3 991 243 0 0 0 chr1 53269776 53269803 -143925629 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 991 185 178 22 0 chr1 53270066 53270111 -143925321 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 3 991 183 42 0 0 chr1 53270368 53270392 -143925040 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 991 192 77 0 0 chr1 53270524 53270550 -143924882 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 991 1902 290 74 14 chr1 53270694 53271554 -143923878 + Lx8 LINE L1 6103 7014 -459 3 991 211 160 0 74 chr1 53271564 53271590 -143923842 + A-rich Low_complexity Low_complexity 1 26 0 3 991 1381 95 27 5 chr1 53271590 53271811 -143923621 + Lx3_Mus LINE L1 6784 7009 0 3 991 211 160 0 74 chr1 53271811 53271838 -143923594 + A-rich Low_complexity Low_complexity 27 50 0 3 991 1201 48 0 0 chr1 53272028 53272174 -143923258 + B1_Mus2 SINE Alu 2 147 0 3 991 220 333 40 32 chr1 53272462 53272586 -143922846 + PB1 SINE Alu 1 125 -2 3 991 229 343 29 0 chr1 53272605 53272675 -143922757 + ID4_ SINE ID 2 73 -10 3 991 21 36 0 0 chr1 53272915 53272943 -143922489 + AT_rich Low_complexity Low_complexity 1 28 0 3 991 387 0 0 0 chr1 53274174 53274217 -143921215 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 991 22592 58 0 1 chr1 53275575 53279075 -143916357 + L1Md_F2 LINE L1 2090 5585 -298 3 991 8499 32 0 0 chr1 53279077 53280072 -143915360 + L1Md_F2 LINE L1 5588 6582 0 3 991 972 171 111 0 chr1 53280447 53280646 -143914786 + URR1B DNA MER1_type 5 225 0 3 991 367 250 132 15 chr1 53280931 53281242 -143914190 - L1MB5 LINE L1 -214 5960 5606 3 991 1976 174 20 6 chr1 53281253 53281606 -143913826 - ORR1B2 LTR MaLR -9 358 1 4 991 268 127 36 0 chr1 53281870 53281925 -143913507 + CT-rich Low_complexity Low_complexity 2 58 0 4 991 234 0 0 0 chr1 53282894 53282920 -143912512 + (A)n Simple_repeat Simple_repeat 1 26 0 4 991 459 0 0 0 chr1 53282988 53283039 -143912393 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 991 607 264 77 6 chr1 53283048 53283204 -143912228 - B3A SINE B2 -30 168 2 4 991 287 223 245 91 chr1 53283557 53283700 -143911732 - ID_B1 SINE B4 -2 222 58 4 991 2215 220 44 23 chr1 53283968 53284628 -143910804 + L1_Rod LINE L1 4885 5558 -289 4 991 429 298 26 3 chr1 53284660 53284827 -143910605 + MuRRS4-int LTR ERV1 3812 3972 -1091 4 991 288 322 59 48 chr1 53284815 53285105 -143910327 + RLTR14-int LTR ERV1 3557 3849 -1468 4 991 197 367 95 7 chr1 53285316 53285464 -143909968 - L2 LINE L2 -655 2764 2604 4 991 2892 40 40 3 chr1 53285665 53286017 -143909415 - RLTR10B2 LTR ERVK 0 365 1 4 991 403 334 110 26 chr1 53286216 53286606 -143908826 + Lx8 LINE L1 7046 7468 -5 4 991 328 283 148 16 chr1 53286662 53286784 -143908648 - L2 LINE L2 -1356 2063 1926 4 991 378 254 218 0 chr1 53287223 53287333 -143908099 + RSINE1 SINE B4 3 136 -29 4 991 253 330 9 55 chr1 53287754 53287863 -143907569 - L2 LINE L2 -2879 540 437 4 991 11853 110 12 22 chr1 53289466 53292234 -143903198 + L1VL4 LINE L1 50 2787 -772 4 991 1122 71 41 6 chr1 53292222 53292393 -143903039 + MusHAL1 LINE L1 879 1055 -1657 4 991 2213 141 62 41 chr1 53292393 53292858 -143902574 + IAPLTR2_Mm LTR ERVK 1 475 0 4 991 543 71 15 175 chr1 53292859 53292996 -143902436 + IAPEz-int LTR ERVK 9 123 -6358 4 991 229 267 0 0 chr1 53292996 53293041 -143902391 + RLTR27 LTR ERVK 231 275 -34 4 991 240 327 0 0 chr1 53293067 53293122 -143902310 + RLTR27 LTR ERVK 221 275 -34 4 991 3198 64 22 16 chr1 53293122 53293688 -143901744 + IAPEz-int LTR ERVK 168 662 -5819 4 991 2085 72 0 0 chr1 53293688 53293966 -143901466 + IAPEz-int LTR ERVK 1359 1636 -4845 4 991 5607 51 4 21 chr1 53293965 53294724 -143900708 + IAPEz-int LTR ERVK 5736 6481 0 4 991 2217 141 62 41 chr1 53294724 53295189 -143900243 + IAPLTR2_Mm LTR ERVK 1 475 0 4 991 18207 168 14 2 chr1 53295189 53298685 -143896747 + L1_Mm LINE L1 2254 5793 -90 4 991 7258 55 0 4 chr1 53298692 53299658 -143895774 + L1Md_F2 LINE L1 4624 5585 -298 4 991 7665 66 13 5 chr1 53299660 53300647 -143894785 + L1Md_F2 LINE L1 5588 6582 0 4 991 4927 153 24 28 chr1 53300642 53301513 -143893919 + Lx LINE L1 5783 6650 -4 4 991 189 121 0 0 chr1 53301515 53301548 -143893884 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 4 991 2089 215 38 60 chr1 53301566 53302269 -143893163 + L1_Rod LINE L1 3700 4387 -1460 4 991 2089 189 12 42 chr1 53302617 53303047 -143892385 - RLTR20B1 LTR ERVK -146 417 1 4 991 2992 159 57 2 chr1 53303047 53303666 -143891766 + Lx6 LINE L1 1398 2050 -3830 4 991 342 0 0 0 chr1 53303667 53303705 -143891727 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 991 882 153 18 0 chr1 53303711 53303874 -143891558 + Lx6 LINE L1 4710 4875 -1005 4 991 235 286 16 0 chr1 53303912 53303975 -143891457 + RLTR19C LTR ERVK 34 97 -409 4 991 4772 188 12 25 chr1 53304412 53305065 -143890367 + Lx6 LINE L1 4872 5528 -352 4 991 5167 114 25 72 chr1 53305065 53306015 -143889417 - RMER17A2 LTR ERVK 0 906 1 4 991 4772 219 35 25 chr1 53306015 53306925 -143888507 + Lx6 LINE L1 5529 6703 -993 4 991 687 166 9 24 chr1 53306968 53307178 -143888254 + GA-rich Low_complexity Low_complexity 1 206 0 4 991 1606 292 43 8 chr1 53307181 53307781 -143887651 + Lx6 LINE L1 6460 7458 -2 4 991 31 76 0 0 chr1 53309357 53309423 -143886009 + AT_rich Low_complexity Low_complexity 1 66 0 4 991 4697 142 24 5 chr1 53309472 53310338 -143885094 - Lx2 LINE L1 -906 4971 4089 4 991 6931 162 26 8 chr1 53310330 53312296 -143883136 + Lx2 LINE L1 4985 6995 -2 4 991 617 267 185 35 chr1 53313088 53313398 -143882034 - MLT1A0 LTR MaLR -20 354 1 4 991 235 151 74 19 chr1 53314332 53314386 -143881046 + RMER19B LTR ERVK 846 902 0 4 991 339 258 133 0 chr1 53314396 53314516 -143880916 + Lx7 LINE L1 6764 6899 -797 4 991 234 272 133 19 chr1 53314516 53314621 -143880811 - LTR88c LTR Genie? -507 355 239 4 991 574 319 130 4 chr1 53314622 53314899 -143880533 + Lx7 LINE L1 7009 7320 -376 4 991 264 59 0 0 chr1 53314899 53314933 -143880499 + (T)n Simple_repeat Simple_repeat 1 34 0 4 991 1120 77 0 27 chr1 53314934 53315080 -143880352 + B1_Mus1 SINE Alu 2 143 -5 4 991 516 268 65 0 chr1 53315170 53315293 -143880139 + MTD LTR MaLR 48 178 -241 4 991 1363 266 29 0 chr1 53315282 53315594 -143879838 + MTD LTR MaLR 91 411 -8 4 991 286 206 0 73 chr1 53315947 53316015 -143879417 - Lx9 LINE L1 -1241 6403 6341 4 991 1648 289 128 34 chr1 53316015 53316680 -143878752 + Lx9 LINE L1 6410 7107 -537 4 991 315 0 0 0 chr1 53316680 53316715 -143878717 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 991 1648 289 128 34 chr1 53316715 53317005 -143878427 + Lx9 LINE L1 7108 7455 -189 4 991 660 344 149 72 chr1 53317580 53317734 -143877698 - MTE-int LTR MaLR -497 1083 938 4 991 974 200 299 101 chr1 53317734 53318179 -143877253 + MT2A LTR ERVL 1 533 0 4 991 660 344 149 72 chr1 53318179 53318865 -143876567 - MTE-int LTR MaLR -643 937 156 4 991 481 232 155 37 chr1 53318865 53319026 -143876406 - B3A SINE B2 -16 182 3 4 991 660 344 149 72 chr1 53319026 53319189 -143876243 - MTE-int LTR MaLR -1425 155 2 4 991 392 221 224 43 chr1 53322294 53322425 -143873007 + B3 SINE B2 27 183 -33 4 991 201 94 0 0 chr1 53322425 53322457 -143872975 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 4 991 392 221 224 43 chr1 53322457 53322486 -143872946 + B3 SINE B2 184 216 0 4 991 312 102 0 0 chr1 53324608 53324657 -143870775 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 991 348 280 40 0 chr1 53324854 53324929 -143870503 - PB1D10 SINE Alu -9 108 31 4 991 389 283 9 9 chr1 53324990 53325097 -143870335 + PB1D7 SINE Alu 1 107 -13 4 991 368 226 97 83 chr1 53325167 53325190 -143870242 - B3A SINE B2 -5 193 175 4 991 234 91 0 0 chr1 53325190 53325223 -143870209 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 991 450 0 0 0 chr1 53325223 53325272 -143870160 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 991 368 226 97 83 chr1 53325272 53325392 -143870040 - B3A SINE B2 -24 174 48 4 991 249 167 0 0 chr1 53325483 53325537 -143869895 + T-rich Low_complexity Low_complexity 1 54 0 4 991 34 106 0 0 chr1 53325706 53325838 -143869594 + AT_rich Low_complexity Low_complexity 1 132 0 4 991 279 0 0 0 chr1 53326368 53326399 -143869033 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 991 207 0 0 0 chr1 53326399 53326421 -143869011 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 991 237 33 0 0 chr1 53327513 53327543 -143867889 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 991 872 140 27 29 chr1 53327674 53327840 -143867592 + B2_Mm2 SINE B2 1 179 -37 4 991 273 57 0 0 chr1 53327842 53327877 -143867555 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 991 262 333 38 0 chr1 53329106 53329211 -143866221 - LTR16A LTR ERVL -5 446 338 4 991 235 348 199 30 chr1 53329230 53329396 -143866036 - LTR16A LTR ERVL -240 211 18 4 991 306 262 126 36 chr1 53331363 53331474 -143863958 - B1F SINE Alu -28 121 1 4 991 542 281 113 25 chr1 53331490 53331808 -143863624 + L1MB3 LINE L1 5838 6183 0 4 991 28 0 0 0 chr1 53332342 53332370 -143863062 + AT_rich Low_complexity Low_complexity 1 28 0 4 991 6927 87 8 113 chr1 53332531 53333849 -143861583 - MusHAL1 LINE L1 -314 2398 1219 4 991 1296 113 5 0 chr1 53333846 53334041 -143861391 + L1_Mus2 LINE L1 6369 6564 -2 4 991 647 146 23 39 chr1 53335122 53335250 -143860182 - URR1B DNA MER1_type 0 225 100 4 991 276 30 0 0 chr1 53335253 53335286 -143860146 + (CAG)n Simple_repeat Simple_repeat 2 34 0 4 991 237 348 14 0 chr1 53335426 53335495 -143859937 + MIR SINE MIR 32 101 -107 4 991 195 42 0 0 chr1 53335652 53335676 -143859756 + (CAA)n Simple_repeat Simple_repeat 3 26 0 4 991 884 270 112 22 chr1 53335840 53336196 -143859236 - RCHARR1 DNA MER1_type -4 970 583 4 991 1025 195 251 20 chr1 53336196 53336499 -143858933 + ORR1D1 LTR MaLR 1 373 -1 4 991 2486 218 208 34 chr1 53336501 53337234 -143858198 + ORR1D1-int LTR MaLR 2 861 -509 4 991 212 0 36 0 chr1 53337234 53337262 -143858170 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 991 3928 112 45 42 chr1 53337267 53337908 -143857524 - Lx LINE L1 -6 6648 6006 4 991 1604 225 59 87 chr1 53337908 53338265 -143857167 + ORR1D1-int LTR MaLR 866 1215 -155 4 991 627 282 51 9 chr1 53338263 53338478 -143856954 - RCHARR1 DNA MER1_type -481 493 270 4 991 197 320 144 37 chr1 53339031 53339219 -143856213 - MIR SINE MIR -16 246 39 4 991 189 94 0 0 chr1 53339269 53339301 -143856131 + (A)n Simple_repeat Simple_repeat 1 32 0 4 991 9064 106 27 11 chr1 53339926 53342199 -143853233 + L1Md_F2 LINE L1 258 2568 -3315 4 991 15144 66 11 1 chr1 53342208 53344310 -143851122 + L1Md_F2 LINE L1 3465 5586 -297 4 991 7344 75 9 16 chr1 53344310 53345311 -143850121 + L1Md_F2 LINE L1 5587 6580 -2 4 991 332 56 0 36 chr1 53346106 53346162 -143849270 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 4 991 376 113 120 53 chr1 53346221 53346296 -143849136 - B3 SINE B2 -135 81 2 4 992 1565 155 20 0 chr1 53346470 53346721 -143848711 - RMER20A LTR ERVK -250 266 11 4 992 180 0 0 0 chr1 53348561 53348581 -143846851 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 992 328 323 10 40 chr1 53348583 53348683 -143846749 + PB1D10 SINE Alu 6 102 -15 4 992 393 288 27 9 chr1 53348769 53348881 -143846551 - B1F1 SINE Alu -35 114 1 4 992 554 137 75 38 chr1 53349505 53349611 -143845821 - B1_Mus2 SINE Alu -35 112 3 4 992 660 309 91 19 chr1 53350010 53350274 -143845158 + MLT1A0 LTR MaLR 83 365 0 4 992 270 95 0 0 chr1 53350360 53350402 -143845030 + (T)n Simple_repeat Simple_repeat 1 42 0 4 992 1143 64 0 0 chr1 53350411 53350552 -143844880 - B1_Mm SINE Alu -6 141 1 4 992 2268 141 42 52 chr1 53351582 53352007 -143843425 - MTC LTR MaLR 0 421 1 4 992 327 49 0 0 chr1 53353229 53353270 -143842162 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 992 259 270 93 65 chr1 53354896 53355003 -143840429 + PB1D7 SINE Alu 1 110 -10 4 992 342 242 158 0 chr1 53355436 53355531 -143839901 - PB1D7 SINE Alu -8 112 3 4 992 255 287 65 16 chr1 53356042 53356166 -143839266 + L1MB3 LINE L1 5977 6106 -77 4 992 385 242 19 75 chr1 53356228 53356335 -143839097 + B1_Mur3 SINE Alu 48 148 -1 4 992 437 295 0 9 chr1 53356348 53356454 -143838978 - PB1 SINE Alu -20 107 3 4 992 371 291 9 0 chr1 53357503 53357613 -143837819 - PB1D7 SINE Alu -9 111 1 4 992 216 156 44 0 chr1 53357841 53357886 -143837546 + (CTAAA)n Simple_repeat Simple_repeat 3 49 0 4 992 746 267 38 32 chr1 53358073 53358267 -143837165 - B3A SINE B2 -5 193 17 4 992 462 36 0 0 chr1 53358274 53358330 -143837102 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 992 264 30 0 0 chr1 53359282 53359315 -143836117 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 992 256 203 87 0 chr1 53359344 53359413 -143836019 - Lx9 LINE L1 -154 7490 7416 4 992 1048 252 25 34 chr1 53359455 53359818 -143835614 - RLTR11A LTR ERVK -26 502 139 5 992 819 152 265 0 chr1 53359794 53360005 -143835427 - RLTR11A LTR ERVK -261 267 1 5 992 916 251 77 56 chr1 53360038 53360413 -143835019 - Lx9 LINE L1 -405 7239 6857 4 992 618 309 112 0 chr1 53360414 53360647 -143834785 - Lx9 LINE L1 -1036 6608 6350 4 992 210 167 0 0 chr1 53361172 53361208 -143834224 + T-rich Low_complexity Low_complexity 1 36 0 5 992 1034 141 92 0 chr1 53361220 53361405 -143834027 - Lx3A LINE L1 -9 6972 6771 5 992 255 181 153 41 chr1 53361940 53362038 -143833394 - L1M2 LINE L1 -492 5808 5700 5 992 783 233 49 10 chr1 53362898 53363102 -143832330 + ID_B1 SINE B4 2 213 -11 5 992 318 269 176 0 chr1 53364259 53364378 -143831054 + B1F2 SINE Alu 1 140 -9 5 992 959 237 5 28 chr1 53364811 53365024 -143830408 + B3 SINE B2 1 208 -8 5 992 796 193 0 0 chr1 53367191 53367326 -143828106 - B1_Mur3 SINE Alu 0 149 15 5 992 529 240 225 21 chr1 53368110 53368484 -143826948 + L1MB3 LINE L1 5642 6091 -92 5 992 216 320 120 0 chr1 53369273 53369348 -143826084 + 7SLRNA srpRNA srpRNA 9 92 -222 5 992 23 0 0 0 chr1 53371258 53371281 -143824151 + AT_rich Low_complexity Low_complexity 1 23 0 5 992 231 292 111 30 chr1 53372069 53372084 -143823348 + ID_B1 SINE B4 70 92 -132 5 992 447 202 144 0 chr1 53372084 53372188 -143823244 + PB1D9 SINE Alu 1 119 -1 5 992 24 0 0 0 chr1 53372619 53372643 -143822789 + AT_rich Low_complexity Low_complexity 1 24 0 5 992 379 263 115 33 chr1 53373630 53373752 -143821680 + RSINE1 SINE B4 3 134 -31 5 992 371 275 0 0 chr1 53374054 53374134 -143821298 - ID4 SINE ID -2 81 2 5 992 588 209 14 11 chr1 53375376 53375516 -143819916 + B1_Mus1 SINE Alu 2 149 0 5 992 568 211 8 13 chr1 53375547 53375665 -143819767 - PB1D7 SINE Alu -5 115 1 5 992 24 32 0 0 chr1 53375685 53375716 -143819716 + AT_rich Low_complexity Low_complexity 1 31 0 5 992 1159 68 0 0 chr1 53375816 53375962 -143819470 + B1_Mm SINE Alu 2 147 0 5 992 294 234 0 83 chr1 53376003 53376087 -143819345 + MT2B2 LTR ERVL 164 240 -344 5 992 657 203 0 8 chr1 53376013 53376132 -143819300 + B1_Mus1 SINE Alu 11 128 -20 5 992 306 227 0 39 chr1 53376280 53376358 -143819074 - B1_Mur3 SINE Alu -1 148 74 5 992 322 233 25 33 chr1 53376604 53376724 -143818708 - L1M2 LINE L1 -2251 3892 3774 5 992 1146 49 35 0 chr1 53378142 53378284 -143817148 + B1_Mm SINE Alu 1 147 0 5 992 644 251 128 5 chr1 53378674 53378862 -143816570 + B3 SINE B2 2 212 -4 5 992 360 294 48 110 chr1 53380252 53380562 -143814870 - B4 SINE B4 -1 291 1 5 992 745 239 88 0 chr1 53381024 53381183 -143814249 + B3 SINE B2 2 174 -42 5 992 308 300 39 20 chr1 53381348 53381450 -143813982 - PB1D7 SINE Alu -16 104 1 5 992 287 272 26 130 chr1 53381804 53381925 -143813507 - PB1D7 SINE Alu -8 119 10 5 992 946 234 274 24 chr1 53382024 53382399 -143813033 + Lx7 LINE L1 6948 7416 -280 5 992 593 237 124 124 chr1 53383441 53383634 -143811798 - B3A SINE B2 -1 194 2 5 992 448 256 93 50 chr1 53383781 53383921 -143811511 + B3A SINE B2 18 163 -35 5 992 653 262 46 40 chr1 53384207 53384358 -143811074 - RSINE1 SINE B4 -8 157 6 5 992 1239 236 167 6 chr1 53384497 53384851 -143810581 + MTD LTR MaLR 1 411 -8 5 992 1460 173 143 76 chr1 53385186 53385543 -143809889 + ORR1B1 LTR MaLR 6 386 -8 5 992 1619 82 62 0 chr1 53385650 53385894 -143809538 + BGLII LTR ERVK 1 259 -162 5 992 924 174 3 13 chr1 53385902 53386214 -143809218 + GA-rich Low_complexity Low_complexity 1 309 0 5 992 22 0 0 0 chr1 53386717 53386739 -143808693 + AT_rich Low_complexity Low_complexity 1 22 0 5 992 1328 96 86 5 chr1 53386832 53387042 -143808390 - Lx LINE L1 -3 6651 6425 5 992 336 48 0 0 chr1 53387360 53387402 -143808030 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 992 837 209 0 7 chr1 53387408 53387557 -143807875 - B3A SINE B2 -50 148 1 5 992 1265 48 0 39 chr1 53388217 53388370 -143807062 - B1_Mus2 SINE Alu 0 147 1 5 992 228 86 0 0 chr1 53388379 53388414 -143807018 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 992 1347 92 0 11 chr1 53388418 53388594 -143806838 - B2_Mm2 SINE B2 -19 176 3 5 992 205 250 15 45 chr1 53389198 53389265 -143806167 + MIRc SINE MIR 136 200 -68 5 992 379 78 0 0 chr1 53389704 53389755 -143805677 - RLTR10-int LTR ERVK -1438 549 499 5 992 1490 93 65 0 chr1 53389755 53389969 -143805463 - RLTR10A LTR ERVK -183 228 1 5 992 2989 130 30 35 chr1 53390394 53390902 -143804530 + RLTR1C LTR ERV1 1 507 0 5 992 8802 109 17 10 chr1 53391183 53392687 -143802745 + Lx3B LINE L1 5410 6921 -52 5 992 2834 101 27 16 chr1 53392697 53393153 -143802279 + L1M4b LINE L1 2550 2995 -1779 5 992 2586 105 5 12 chr1 53393148 53393554 -143801878 + L1M4b LINE L1 3765 4167 -607 5 992 23 54 0 0 chr1 53393722 53393759 -143801673 + AT_rich Low_complexity Low_complexity 1 37 0 5 992 12940 84 6 4 chr1 53394003 53396508 -143798924 - L1_Mus2 LINE L1 0 6566 4060 5 992 6653 79 13 26 chr1 53396505 53397886 -143797546 - L1VL1 LINE L1 -2112 1586 219 5 992 234 296 28 0 chr1 53398309 53398380 -143797052 - MER5A DNA MER1_type -1 188 116 5 992 228 328 0 0 chr1 53399132 53399199 -143796233 - L2b LINE L2 -6 3369 3303 5 992 240 292 33 33 chr1 53400474 53400566 -143794866 + MLT1A1 LTR MaLR 254 345 -63 5 992 576 279 199 25 chr1 53400916 53401192 -143794240 - MER21B LTR ERV1 -123 740 417 5 992 23 54 0 0 chr1 53401835 53401872 -143793560 + AT_rich Low_complexity Low_complexity 1 37 0 5 992 386 175 6 0 chr1 53402682 53402756 -143792676 - PB1D10 SINE Alu -1 119 43 5 992 1437 94 119 0 chr1 53405663 53405865 -143789567 - URR1A DNA MER1_type 0 226 1 5 992 848 248 117 23 chr1 53406105 53406369 -143789063 + Lx8 LINE L1 6858 7146 -327 5 992 892 157 0 15 chr1 53406419 53406555 -143788877 + B1_Mus1 SINE Alu 6 139 -9 5 992 26 0 0 0 chr1 53407531 53407557 -143787875 + AT_rich Low_complexity Low_complexity 1 26 0 5 992 1243 68 0 7 chr1 53408051 53408200 -143787232 + B1_Mus1 SINE Alu 1 148 0 5 992 23 0 0 0 chr1 53409413 53409436 -143785996 + GC_rich Low_complexity Low_complexity 1 23 0 5 992 777 181 6 11 chr1 53409792 53409971 -143785461 + CT-rich Low_complexity Low_complexity 1 178 0 5 992 268 202 75 43 chr1 53409984 53410077 -143785355 - B2_Mm1t SINE B2 -5 188 93 5 992 20288 143 93 16 chr1 53410078 53414938 -143780494 + L1_Mus4 LINE L1 1382 6635 -1 5 992 33 0 0 0 chr1 53414954 53414987 -143780445 + AT_rich Low_complexity Low_complexity 1 33 0 5 992 424 272 52 72 chr1 53415007 53415257 -143780175 - MER33 DNA MER1_type -70 254 10 5 992 202 354 0 0 chr1 53415571 53415595 -143779837 + polypurine Low_complexity Low_complexity 2 25 0 5 992 1143 117 0 0 chr1 53415595 53415775 -143779657 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 992 202 354 0 0 chr1 53415775 53415829 -143779603 + polypurine Low_complexity Low_complexity 26 79 0 5 992 450 0 0 0 chr1 53416251 53416301 -143779131 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 992 529 225 129 32 chr1 53416304 53416428 -143779004 - B3A SINE B2 -60 138 3 5 992 250 175 0 17 chr1 53416446 53416504 -143778928 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 5 992 1187 95 0 0 chr1 53416504 53416652 -143778780 - B1_Mus1 SINE Alu 0 148 1 5 992 546 275 14 28 chr1 53416661 53416803 -143778629 - B1F1 SINE Alu -8 141 2 5 992 1801 231 82 86 chr1 53417688 53418199 -143777233 - RLTR18B LTR ERVK -3 509 1 5 992 4206 74 6 49 chr1 53418363 53419001 -143776431 - L1_Mur1 LINE L1 -2514 3372 2762 5 992 1221 290 18 69 chr1 53419346 53419701 -143775731 + MYSERV-int LTR ERVK 4980 5312 -1238 5 992 243 88 0 0 chr1 53419701 53419735 -143775697 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 5 992 1221 290 18 69 chr1 53419735 53419883 -143775549 + MYSERV-int LTR ERVK 5313 5457 -1093 5 992 1025 93 0 7 chr1 53421439 53421591 -143773841 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 5 992 702 299 10 0 chr1 53422341 53422538 -143772894 - B3 SINE B2 -16 200 2 5 992 307 286 129 12 chr1 53422567 53422652 -143772780 - B3 SINE B2 -121 95 1 5 992 494 312 67 26 chr1 53422878 53423190 -143772242 - L1M2 LINE L1 -497 5800 5476 5 992 2212 224 43 48 chr1 53423311 53423328 -143772104 - RMER15 LTR ERVL 0 575 559 5 992 1578 225 101 44 chr1 53423328 53423783 -143771649 + RLTR28B LTR ERVL 1 481 0 5 992 2212 224 43 48 chr1 53423783 53424343 -143771089 - RMER15 LTR ERVL -17 558 1 5 992 410 204 9 0 chr1 53424401 53424509 -143770923 + CT-rich Low_complexity Low_complexity 3 111 0 5 992 306 292 146 0 chr1 53424747 53424877 -143770555 - Lx7 LINE L1 -604 7092 6944 5 992 219 36 0 0 chr1 53424914 53424942 -143770490 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 992 1379 239 138 27 chr1 53424942 53425347 -143770085 - RMER1B Other Other -33 1033 584 5 992 1087 324 55 22 chr1 53425328 53425840 -143769592 - RMER1A Other Other -587 443 1 5 992 229 167 50 0 chr1 53426300 53426360 -143769072 + CT-rich Low_complexity Low_complexity 2 64 0 5 992 3999 58 19 0 chr1 53426923 53427389 -143768043 - MT2C_Mm LTR ERVL 0 475 1 5 992 272 30 0 0 chr1 53427389 53427422 -143768010 - MERVL-int LTR ERVL 0 5485 5453 5 992 361 125 26 53 chr1 53427423 53427499 -143767933 - ORR1A3-int LTR MaLR -1323 640 567 5 992 17266 47 5 3 chr1 53427617 53428264 -143767168 - MERVL-int LTR ERVL -124 5361 4718 5 992 3035 49 0 3 chr1 53428264 53428610 -143766822 - IAPLTR4 LTR ERVK 0 345 1 5 992 17266 47 5 3 chr1 53428610 53430020 -143765412 - MERVL-int LTR ERVL -768 4717 3301 5 992 3610 90 0 0 chr1 53430022 53430510 -143764922 - L1VL4 LINE L1 -3049 2834 2347 5 992 4177 184 28 37 chr1 53430510 53432291 -143763141 - L1VL4 LINE L1 -4043 1840 217 5 992 6097 146 38 3 chr1 53432309 53433880 -143761552 + ETnERV2-int LTR ERVK 4194 5819 -1587 5 992 1255 173 0 58 chr1 53433860 53433971 -143761461 + ETnERV2-int LTR ERVK 6002 6106 -1300 5 992 2977 67 62 0 chr1 53433971 53434343 -143761089 - MTA_Mm LTR MaLR -1 395 1 5 992 1255 233 25 36 chr1 53434343 53434720 -143760712 + ETnERV2-int LTR ERVK 6107 6425 -981 5 992 283 186 68 54 chr1 53434929 53435003 -143760429 + ETnERV2-int LTR ERVK 7330 7404 -2 5 992 2205 186 28 33 chr1 53435004 53435426 -143760006 + RLTR9B2 LTR ERVK 1 420 0 5 992 23189 118 11 6 chr1 53435426 53436530 -143758902 + L1_Mus2 LINE L1 2375 3477 -2406 5 992 345 24 0 0 chr1 53436530 53436572 -143758860 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 6 992 23189 118 11 6 chr1 53436572 53437296 -143758136 + L1_Mus2 LINE L1 3478 4195 -1688 5 992 375 23 0 0 chr1 53437296 53437340 -143758092 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 992 23189 100 22 5 chr1 53437340 53439662 -143755770 + L1_Mus2 LINE L1 4196 6654 0 5 992 753 109 36 7 chr1 53439665 53439803 -143755629 + GA-rich Low_complexity Low_complexity 3 144 0 6 992 564 15 0 0 chr1 53439803 53439868 -143755564 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 6 992 1253 99 87 0 chr1 53440281 53440453 -143754979 + B2_Mm2 SINE B2 1 187 -8 6 992 354 188 100 40 chr1 53441413 53441513 -143753919 + MTD LTR MaLR 1 106 -290 6 992 521 177 42 0 chr1 53441527 53441623 -143753809 - B1_Mus2 SINE Alu 0 147 48 6 992 1013 227 89 52 chr1 53441624 53441893 -143753539 + MTD LTR MaLR 132 410 -9 6 992 575 239 109 22 chr1 53442773 53442910 -143752522 - B1_Mur3 SINE Alu 0 149 1 6 992 732 138 0 71 chr1 53443040 53443180 -143752252 - RLTR1 LTR ERV1 0 624 495 6 992 3157 98 12 58 chr1 53443180 53443667 -143751765 - MMVL30-int LTR ERV1 -141 3158 2694 6 992 654 314 8 4 chr1 53443671 53443917 -143751515 - RLTR6-int LTR ERV1 -3199 4579 4333 6 992 5188 119 24 11 chr1 53444050 53444880 -143750552 - MMVL30-int LTR ERV1 -2393 2670 1500 6 992 625 171 133 24 chr1 53444947 53445185 -143750247 - MMVL30-int LTR ERV1 -2115 1184 949 6 992 1988 135 42 36 chr1 53445199 53445560 -143749872 - MMVL30-int LTR ERV1 -2178 1520 1158 6 992 270 143 92 59 chr1 53445929 53446048 -143749384 - MMVL30-int LTR ERV1 -2567 732 610 6 992 1277 177 212 52 chr1 53446113 53446663 -143748769 - MMVL30-int LTR ERV1 -6933 623 1 6 992 1283 196 122 56 chr1 53446663 53447057 -143748375 - RLTR1 LTR ERV1 0 624 135 6 992 438 127 0 0 chr1 53448882 53448953 -143746479 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 992 22 56 0 0 chr1 53449745 53449781 -143745651 + AT_rich Low_complexity Low_complexity 1 36 0 6 992 357 24 0 0 chr1 53449842 53449884 -143745548 + (CATA)n Simple_repeat Simple_repeat 3 44 0 6 992 2992 86 15 8 chr1 53450791 53451191 -143744241 + RLTR9D LTR ERVK 1 403 0 6 992 1082 254 35 66 chr1 53451193 53451589 -143743843 + ETnERV2-int LTR ERVK 3 386 -2928 6 992 4819 139 110 16 chr1 53451604 53452532 -143742900 + ETnERV2-int LTR ERVK 1071 2085 -5321 6 992 769 138 0 37 chr1 53452568 53452704 -143742728 + RLTR9D LTR ERVK 273 403 0 6 992 22 0 0 0 chr1 53453646 53453668 -143741764 + AT_rich Low_complexity Low_complexity 1 22 0 6 992 350 307 80 56 chr1 53456350 53456661 -143738771 + L1M2 LINE L1 1810 2131 -5037 6 992 965 274 22 27 chr1 53456661 53456886 -143738546 + ID_B1 SINE B4 1 224 0 6 992 350 307 80 56 chr1 53456886 53456913 -143738519 + L1M2 LINE L1 2132 2157 -5011 6 992 441 0 0 0 chr1 53456913 53456962 -143738470 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 992 350 307 80 56 chr1 53456962 53456998 -143738434 + L1M2 LINE L1 2158 2194 -4974 6 992 346 226 0 37 chr1 53457000 53457081 -143738351 + PB1D7 SINE Alu 43 120 0 6 992 751 104 0 0 chr1 53457142 53457248 -143738184 + B2_Mm2 SINE B2 2 107 -88 6 992 601 318 126 20 chr1 53457608 53457855 -143737577 - B4A SINE B4 -10 282 10 6 992 497 241 62 17 chr1 53457862 53458039 -143737393 + L1M2 LINE L1 2643 2827 -4341 6 992 1138 292 68 11 chr1 53458597 53459149 -143736283 + L1M2 LINE L1 3114 3700 -3464 6 992 318 317 57 9 chr1 53459477 53459582 -143735850 - Lx8 LINE L1 -145 7328 7219 6 992 363 335 65 11 chr1 53459885 53460163 -143735269 + L1M2 LINE L1 5632 5924 -1240 6 992 572 208 55 25 chr1 53460179 53460342 -143735090 + L1M2 LINE L1 6567 6734 -587 6 992 302 82 0 39 chr1 53460361 53460412 -143735020 + (CATA)n Simple_repeat Simple_repeat 4 52 0 6 992 1091 45 0 0 chr1 53460450 53460583 -143734849 + B1_Mus1 SINE Alu 8 140 -8 6 992 213 39 0 0 chr1 53460583 53460609 -143734823 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 992 206 32 32 0 chr1 53460609 53460640 -143734792 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 992 249 135 0 0 chr1 53460708 53460760 -143734672 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 992 694 296 84 47 chr1 53461943 53462241 -143733191 - MER82 DNA MER2_type -53 600 292 6 992 392 317 108 0 chr1 53462276 53462462 -143732970 - MER82 DNA MER2_type -447 206 1 6 992 261 342 52 0 chr1 53462907 53463006 -143732426 - PB1D10 SINE Alu -12 108 2 6 992 25 0 0 0 chr1 53463306 53463331 -143732101 + AT_rich Low_complexity Low_complexity 1 25 0 6 992 3584 40 0 0 chr1 53464390 53464786 -143730646 + MTA_Mm LTR MaLR 1 396 0 6 992 9913 31 1 1 chr1 53464786 53465884 -143729548 + MTA_Mm-int LTR MaLR 1 1098 0 6 992 3513 43 0 8 chr1 53465884 53466283 -143729149 + MTA_Mm LTR MaLR 1 396 0 6 992 393 348 122 21 chr1 53466560 53466889 -143728543 - L2 LINE L2 -1100 2319 1958 6 992 680 236 20 13 chr1 53467282 53467432 -143728000 - RSINE1 SINE B4 -13 152 2 6 992 703 270 165 30 chr1 53467557 53467794 -143727638 + B4A SINE B4 24 292 0 6 992 488 52 61 20 chr1 53467835 53467934 -143727498 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 6 992 296 273 80 116 chr1 53469348 53469460 -143725972 - B1F1 SINE Alu -41 108 1 6 992 435 119 0 0 chr1 53469863 53469930 -143725502 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 992 2873 103 11 46 chr1 53469935 53470373 -143725059 + RLTR9B LTR ERVK 7 429 -8 6 992 549 0 0 0 chr1 53470373 53470434 -143724998 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 6 992 243 0 0 0 chr1 53471181 53471208 -143724224 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 992 198 0 0 0 chr1 53471303 53471325 -143724107 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 6 992 21 0 0 0 chr1 53472269 53472290 -143723142 + AT_rich Low_complexity Low_complexity 1 21 0 6 992 327 96 0 0 chr1 53472679 53472731 -143722701 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 6 992 878 153 163 0 chr1 53472806 53473015 -143722417 - Lx9 LINE L1 -30 7614 7372 6 992 311 245 19 19 chr1 53473051 53473155 -143722277 - L1M5 LINE L1 -3270 2876 2773 6 992 254 206 51 64 chr1 53474273 53474351 -143721081 - L1MD LINE L1 -641 5601 5525 6 992 24 32 0 0 chr1 53474469 53474500 -143720932 + AT_rich Low_complexity Low_complexity 1 31 0 6 992 256 333 95 30 chr1 53475257 53475405 -143720027 + L2a LINE L2 2759 2923 -496 6 992 722 58 33 0 chr1 53475405 53475526 -143719906 + (CA)n Simple_repeat Simple_repeat 1 125 0 6 992 256 333 95 30 chr1 53475526 53475609 -143719823 + L2a LINE L2 2924 3005 -414 6 992 768 266 11 34 chr1 53475799 53475978 -143719454 + B3A SINE B2 8 182 -16 6 992 273 273 0 0 chr1 53475982 53476048 -143719384 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 992 186 306 173 26 chr1 53476151 53476342 -143719090 + L2a LINE L2 3207 3425 -1 6 993 1797 118 71 4 chr1 53477815 53478095 -143717337 - Lx3C LINE L1 -104 6872 6574 6 993 374 323 11 63 chr1 53478801 53478976 -143716456 + MIR SINE MIR 11 176 -86 6 993 1069 111 122 6 chr1 53479543 53479715 -143715717 + B2_Mm2 SINE B2 2 193 -2 6 993 204 40 0 0 chr1 53479801 53479826 -143715606 + (A)n Simple_repeat Simple_repeat 1 25 0 6 993 3437 59 0 0 chr1 53480695 53481101 -143714331 - L1_Mus1 LINE L1 0 6567 6162 6 993 369 80 0 0 chr1 53481247 53481297 -143714135 - B1_Mus1 SINE Alu -97 51 2 6 993 351 0 0 0 chr1 53482864 53482903 -143712529 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 993 1121 131 91 0 chr1 53482905 53483081 -143712351 + ORR1C2 LTR MaLR 191 382 -2 6 993 496 207 57 57 chr1 53483104 53483263 -143712169 - L1MC LINE L1 -2175 3971 3813 6 993 401 294 94 64 chr1 53483545 53483778 -143711654 - BLACKJACK DNA AcHobo -1019 1925 1686 6 993 212 200 44 0 chr1 53483850 53483895 -143711537 + G-rich Low_complexity Low_complexity 3 49 0 6 993 291 291 13 0 chr1 53483905 53483984 -143711448 + ID_B1 SINE B4 114 193 -31 6 993 529 200 70 0 chr1 53484038 53484138 -143711294 + PB1D9 SINE Alu 6 112 -8 6 993 273 368 44 58 chr1 53485814 53486039 -143709393 + LTR78 LTR ERV1 947 1168 -136 6 993 288 0 0 0 chr1 53486456 53486488 -143708944 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 993 634 238 30 37 chr1 53486494 53486629 -143708803 - B1_Mur2 SINE Alu -15 134 1 6 993 373 343 54 29 chr1 53486642 53486882 -143708550 + L1MC4 LINE L1 6749 6994 -1048 6 993 533 202 0 10 chr1 53486882 53486982 -143708450 + RLTR13D6 LTR ERVK 800 898 -4 6 993 300 53 0 0 chr1 53487336 53487374 -143708058 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 6 993 225 197 33 0 chr1 53487532 53487593 -143707839 + ID4 SINE ID 15 77 -6 6 993 445 343 130 0 chr1 53487797 53487966 -143707466 - RMER30 DNA MER1_type -2 200 10 6 993 396 0 0 0 chr1 53488031 53488075 -143707357 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 993 641 282 36 50 chr1 53488157 53488377 -143707055 + MER2 DNA MER2_type 127 343 -2 6 993 215 271 0 0 chr1 53488394 53488453 -143706979 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 993 205 161 0 0 chr1 53488951 53488982 -143706450 + polypyrimidine Low_complexity Low_complexity 2 32 0 6 993 252 0 0 0 chr1 53488982 53489010 -143706422 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 993 29 0 0 0 chr1 53489523 53489552 -143705880 + AT_rich Low_complexity Low_complexity 1 29 0 6 993 207 0 0 0 chr1 53490606 53490629 -143704803 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 993 23 0 0 0 chr1 53491120 53491143 -143704289 + AT_rich Low_complexity Low_complexity 1 23 0 6 993 2936 134 40 28 chr1 53491482 53492010 -143703422 + RLTR13D1 LTR ERVK 10 543 -359 6 993 3890 77 17 10 chr1 53491985 53492554 -143702878 + RLTR13D1 LTR ERVK 229 808 0 6 993 2046 99 15 48 chr1 53492570 53492900 -143702532 - ORR1A2 LTR MaLR -8 319 1 6 993 453 184 0 0 chr1 53493976 53494052 -143701380 - 4.5SRNA scRNA scRNA -15 79 4 6 993 341 265 71 10 chr1 53494528 53494627 -143700805 + PB1D10 SINE Alu 5 109 -8 6 993 443 155 0 0 chr1 53494770 53494841 -143700591 - Lx9 LINE L1 -281 7363 7293 6 993 183 129 0 0 chr1 53496589 53496620 -143698812 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 993 262 273 67 83 chr1 53496620 53496740 -143698692 - RSINE1 SINE B4 0 165 48 6 993 305 143 20 0 chr1 53496857 53496906 -143698526 + HAL1-3A_ME LINE L1 1969 2018 -840 6 993 221 261 0 0 chr1 53496907 53496953 -143698479 + (CATA)n Simple_repeat Simple_repeat 4 49 0 6 993 899 99 8 0 chr1 53497996 53498127 -143697305 - URR1B DNA MER1_type 0 225 94 6 993 624 197 51 0 chr1 53498129 53498246 -143697186 + ETnERV2-int LTR ERVK 7070 7192 -214 6 993 478 224 0 48 chr1 53498640 53498743 -143696689 - URR1B DNA MER1_type -127 98 1 6 993 315 0 0 0 chr1 53498863 53498898 -143696534 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 993 259 270 95 0 chr1 53500037 53500111 -143695321 - ORSL DNA Tip100 0 275 195 1 993 1175 56 0 0 chr1 53500111 53500254 -143695178 + B1_Mus1 SINE Alu 2 144 -4 2 993 207 25 49 24 chr1 53500254 53500295 -143695137 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 993 495 0 0 0 chr1 53501643 53501698 -143693734 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 993 1864 165 3 49 chr1 53502007 53502352 -143693080 - ORR1A4 LTR MaLR 0 329 1 5 993 4351 192 93 28 chr1 53502352 53503618 -143691814 - ORR1A4-int LTR MaLR 0 1370 1 5 993 2037 144 16 0 chr1 53503652 53503972 -143691460 - ORR1A4 LTR MaLR -4 325 1 5 993 320 178 0 40 chr1 53503972 53504048 -143691384 + RMER10A LTR ERVL 370 442 0 6 993 243 0 0 0 chr1 53505018 53505045 -143690387 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 993 341 296 71 0 chr1 53505073 53505171 -143690261 - B1F2 SINE Alu -44 105 1 8 993 2719 25 0 12 chr1 53506041 53506370 -143689062 + L1Md_F2 LINE L1 6257 6581 -1 9 993 396 0 0 0 chr1 53506668 53506712 -143688720 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 993 661 132 107 15 chr1 53507357 53507488 -143687944 - MTC LTR MaLR -278 143 1 1 993 288 0 0 0 chr1 53507991 53508023 -143687409 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 993 1886 38 4 0 chr1 53508024 53508262 -143687170 - L1Md_F2 LINE L1 -129 6453 6215 1 993 770 200 6 28 chr1 53508254 53508434 -143686998 - L1VL1 LINE L1 -6186 236 61 1 993 1399 209 104 79 chr1 53508436 53508938 -143686494 - RLTR20B3 LTR ERVK -39 521 20 1 993 344 188 32 115 chr1 53509958 53510114 -143685318 + MER67C LTR ERV1 1 143 -568 1 993 613 209 56 28 chr1 53510136 53510279 -143685153 - RSINE1 SINE B4 0 165 19 1 993 754 285 112 59 chr1 53510323 53510610 -143684822 + MER67C LTR ERV1 137 438 -273 1 993 207 0 0 0 chr1 53510902 53510925 -143684507 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 993 22 0 0 0 chr1 53511127 53511149 -143684283 + AT_rich Low_complexity Low_complexity 1 22 0 1 993 504 190 0 12 chr1 53511205 53511290 -143684142 - B1_Mur2 SINE Alu -21 128 45 2 993 521 261 87 21 chr1 53511373 53511591 -143683841 + B4A SINE B4 8 241 -51 2 993 191 373 45 0 chr1 53511683 53511750 -143683682 - L2b LINE L2 -71 3304 3235 2 993 2163 138 12 37 chr1 53511959 53512367 -143683065 + RMER10B LTR ERVL 1 398 0 2 993 2977 143 25 29 chr1 53512677 53513203 -143682229 - RLTR28 LTR ERVL 0 524 1 2 993 657 206 27 75 chr1 53514247 53514394 -143681038 + B3 SINE B2 1 140 -76 2 993 387 0 0 0 chr1 53514395 53514438 -143680994 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 993 31291 81 8 6 chr1 53514684 53519835 -143675597 + L1Md_F3 LINE L1 450 5585 -298 2 993 7851 54 3 1 chr1 53519836 53520818 -143674614 + L1Md_F3 LINE L1 5587 6570 -14 2 993 2430 133 55 35 chr1 53521851 53522303 -143673129 - RMER6B LTR ERVK 0 461 1 2 993 1690 205 64 95 chr1 53522910 53523455 -143671977 + RLTR11A LTR ERVK 1 528 0 2 993 248 333 116 30 chr1 53524253 53524417 -143671015 - MIR SINE MIR -36 226 49 3 993 226 0 29 29 chr1 53524476 53524511 -143670921 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 993 231 281 44 156 chr1 53527268 53527428 -143668004 - Charlie15a DNA MER1_type -5 219 78 3 993 880 152 12 0 chr1 53527647 53527812 -143667620 + GA-rich Low_complexity Low_complexity 2 168 0 3 993 27 0 0 0 chr1 53527857 53527884 -143667548 + AT_rich Low_complexity Low_complexity 1 27 0 3 993 280 263 183 0 chr1 53528419 53528605 -143666827 + L1MA6 LINE L1 6071 6290 -10 3 993 22 35 0 0 chr1 53528612 53528641 -143666791 + AT_rich Low_complexity Low_complexity 1 29 0 3 993 418 258 0 101 chr1 53529344 53529512 -143665920 + ID_B1 SINE B4 68 218 -6 3 993 759 153 0 74 chr1 53529373 53529521 -143665911 + B1_Mus2 SINE Alu 11 147 0 3 993 246 190 0 47 chr1 53530220 53530347 -143665085 + CT-rich Low_complexity Low_complexity 6 126 0 3 993 343 301 35 17 chr1 53531259 53531374 -143664058 + L2c LINE L2 3047 3163 -224 4 993 2450 106 11 11 chr1 53531475 53531846 -143663586 - L1_Mus3 LINE L1 0 6638 6268 4 993 23 33 0 0 chr1 53531882 53531912 -143663520 + AT_rich Low_complexity Low_complexity 1 30 0 4 993 3669 168 42 11 chr1 53531981 53532674 -143662758 + RMER6D LTR ERVK 1 714 -6 4 993 373 374 26 16 chr1 53532691 53532884 -143662548 + L1M5 LINE L1 4733 4927 -1219 4 993 540 305 0 0 chr1 53533404 53533532 -143661900 - RSINE1 SINE B4 -35 130 3 4 993 2279 164 5 2 chr1 53533859 53534294 -143661138 + L1_Mur1 LINE L1 4597 5032 -854 4 993 611 254 132 113 chr1 53536954 53537326 -143658106 - MTE2a LTR MaLR 0 379 1 4 993 25 75 0 0 chr1 53537339 53537392 -143658040 + AT_rich Low_complexity Low_complexity 1 53 0 4 993 723 81 0 0 chr1 53537755 53537854 -143657578 + (TG)n Simple_repeat Simple_repeat 1 99 0 4 993 308 347 68 20 chr1 53538052 53538199 -143657233 - L1MC4 LINE L1 -571 7471 7318 5 993 263 352 114 27 chr1 53538313 53538532 -143656900 - MER74C LTR ERVL -159 301 64 5 993 22 0 0 0 chr1 53538818 53538840 -143656592 + GC_rich Low_complexity Low_complexity 1 22 0 5 993 948 95 0 0 chr1 53538927 53539064 -143656368 + (GTGTG)n Simple_repeat Simple_repeat 5 141 0 5 993 228 35 0 0 chr1 53539786 53539815 -143655617 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 993 216 254 34 0 chr1 53540678 53540737 -143654695 + ID SINE ID 2 62 -162 5 993 21 0 0 0 chr1 53540749 53540770 -143654662 + AT_rich Low_complexity Low_complexity 1 21 0 5 993 600 77 0 0 chr1 53541263 53541354 -143654078 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 5 993 364 304 210 0 chr1 53541367 53541637 -143653795 - Lx9 LINE L1 -173 7471 7145 5 993 1065 190 29 2 chr1 53541640 53541886 -143653546 + L1MA5 LINE L1 5620 5944 -356 5 993 4745 102 151 24 chr1 53541992 53542796 -143652636 + RMER17A2 LTR ERVK 1 906 0 6 993 24 32 0 0 chr1 53543071 53543102 -143652330 + AT_rich Low_complexity Low_complexity 1 31 0 6 993 3117 56 10 5 chr1 53543238 53543632 -143651800 + MTA_Mm LTR MaLR 1 396 0 6 993 365 319 55 34 chr1 53543991 53544137 -143651295 + RSINE1 SINE B4 3 151 -14 6 993 3104 136 22 54 chr1 53544154 53544691 -143650741 - RLTR11A2 LTR ERVK -7 520 1 6 993 33992 70 1 13 chr1 53545019 53551122 -143644310 - L1Md_F2 LINE L1 0 6582 559 6 993 725 283 18 64 chr1 53551831 53552050 -143643382 - B4 SINE B4 -82 210 2 6 993 294 246 14 0 chr1 53552068 53552137 -143643295 - ID4 SINE ID -10 73 4 6 993 954 104 32 0 chr1 53553075 53553229 -143642203 - L1_Mus2 LINE L1 0 6566 6408 6 993 205 240 0 29 chr1 53553368 53553471 -143641961 + (TGG)n Simple_repeat Simple_repeat 2 101 0 6 993 1385 250 112 31 chr1 53555332 53555947 -143639485 + Lx9 LINE L1 6980 7644 0 7 993 459 275 43 71 chr1 53556089 53556230 -143639202 - B4 SINE B4 -120 172 36 7 993 21 71 0 0 chr1 53556984 53557026 -143638406 + AT_rich Low_complexity Low_complexity 1 42 0 7 993 444 269 292 44 chr1 53557866 53558092 -143637340 - B4 SINE B4 -6 286 5 7 993 182 62 31 0 chr1 53559533 53559565 -143635867 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 7 993 25 75 0 0 chr1 53561247 53561300 -143634132 + AT_rich Low_complexity Low_complexity 1 53 0 7 993 486 127 63 0 chr1 53561463 53561542 -143633890 + Lx9 LINE L1 6692 6775 -869 7 993 3296 84 2 52 chr1 53561542 53562042 -143633390 + IAPLTR2_Mm LTR ERVK 1 475 0 7 993 1043 76 9 159 chr1 53562043 53562263 -143633169 + IAPEz-int LTR ERVK 9 195 -6286 7 993 227 321 0 0 chr1 53562263 53562316 -143633116 + RLTR27 LTR ERVK 223 275 -34 7 993 3571 69 6 18 chr1 53562316 53562817 -143632615 + IAPEz-int LTR ERVK 168 662 -5819 7 993 942 50 0 0 chr1 53562817 53562936 -143632496 + IAPEz-int LTR ERVK 1359 1477 -5004 7 993 1788 91 8 0 chr1 53562931 53563183 -143632249 + IAPEz-int LTR ERVK 2244 2497 -5183 7 993 14555 43 3 0 chr1 53563182 53565002 -143630430 + IAPEz-int LTR ERVK 4656 6481 0 7 993 3317 91 2 37 chr1 53565002 53565494 -143629938 + IAPLTR2_Mm LTR ERVK 1 475 0 7 993 2773 201 47 8 chr1 53565494 53566136 -143629296 + Lx9 LINE L1 6770 7436 -208 8 993 1138 71 0 0 chr1 53566145 53566286 -143629146 + RLTR13C2 LTR ERVK 1 141 -667 8 993 558 0 0 0 chr1 53566621 53566683 -143628749 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 993 596 314 103 17 chr1 53567291 53567608 -143627824 + MLT1A0 LTR MaLR 6 349 -16 8 993 244 58 55 55 chr1 53568109 53568182 -143627250 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 8 993 1170 62 14 0 chr1 53568182 53568327 -143627105 - B1_Mus2 SINE Alu 0 147 1 8 993 34134 57 2 1 chr1 53568940 53574409 -143621023 - L1Md_F3 LINE L1 -14 6570 1096 8 993 2327 184 12 4 chr1 53574411 53574898 -143620534 - L1Md_F3 LINE L1 -5793 931 441 8 993 2210 4 0 0 chr1 53576036 53576291 -143619141 + L1Md_A LINE L1 5332 5586 -297 8 993 9093 1 0 0 chr1 53576291 53577287 -143618145 + L1Md_A LINE L1 5587 6582 0 8 993 312 27 0 0 chr1 53577363 53577400 -143618032 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 993 602 120 26 53 chr1 53579268 53579382 -143616050 + PB1D9 SINE Alu 9 119 -1 8 993 672 310 42 0 chr1 53580032 53580245 -143615187 - ID_B1 SINE B4 0 224 3 9 993 298 329 19 71 chr1 53580286 53580429 -143615003 + RSINE1 SINE B4 3 139 -26 9 993 420 37 0 0 chr1 53580429 53580483 -143614949 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 993 6803 107 28 19 chr1 53582368 53583392 -143612040 + RLTR13D4 LTR ERVK 1 1033 0 9 993 24 85 0 0 chr1 53583446 53583505 -143611927 + AT_rich Low_complexity Low_complexity 1 59 0 9 993 221 313 35 35 chr1 53583844 53583930 -143611502 + L2c LINE L2 3273 3358 -29 9 993 3138 64 177 2 chr1 53584565 53585001 -143610431 + RLTR1B LTR ERV1 1 512 0 9 993 22 0 0 0 chr1 53586607 53586629 -143608803 + AT_rich Low_complexity Low_complexity 1 22 0 9 993 462 233 0 0 chr1 53586696 53586786 -143608646 - B3A SINE B2 -107 91 2 9 993 237 304 14 55 chr1 53586819 53586892 -143608540 + ID4_ SINE ID 11 80 -3 9 993 2196 176 164 48 chr1 53587275 53587837 -143607595 + RMER20B LTR ERVK 1 627 0 1 993 369 280 99 68 chr1 53588386 53588547 -143606885 - B4A SINE B4 -123 169 4 1 993 269 258 30 0 chr1 53588671 53588737 -143606695 + BC1_Mm scRNA scRNA 3 70 -82 1 993 298 192 0 0 chr1 53588694 53588746 -143606686 + ID SINE ID 29 80 -144 1 993 189 0 0 0 chr1 53588876 53588897 -143606535 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 993 3955 100 11 14 chr1 53589283 53589849 -143605583 + LTRIS2 LTR ERV1 1 564 0 1 993 371 279 0 85 chr1 53590646 53590787 -143604645 + RMER10B LTR ERVL 236 364 -34 1 993 379 244 21 9 chr1 53591003 53591122 -143604310 + B1_Mus1 SINE Alu 1 117 0 1 993 25 75 0 0 chr1 53592425 53592478 -143602954 + AT_rich Low_complexity Low_complexity 1 53 0 1 993 222 91 0 0 chr1 53592558 53592591 -143602841 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 993 1162 219 5 0 chr1 53592924 53593148 -143602284 - URR1B DNA MER1_type 0 225 1 1 993 268 331 104 14 chr1 53593715 53593859 -143601573 + LTR80B LTR ERVL 252 408 -176 1 993 333 340 31 13 chr1 53594537 53594794 -143600638 + L1M4 LINE L1 4197 4459 -1687 1 993 420 250 34 17 chr1 53594858 53594877 -143600555 - MER58C DNA MER1_type -94 121 103 1 993 207 0 0 0 chr1 53594877 53594900 -143600532 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 993 420 250 34 17 chr1 53594900 53594998 -143600434 - MER58C DNA MER1_type -113 102 2 1 993 316 318 31 0 chr1 53595346 53595475 -143599957 - L1MC2 LINE L1 -195 6149 6017 1 993 432 0 0 0 chr1 53595936 53595984 -143599448 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 993 482 299 43 0 chr1 53596224 53596431 -143599001 + Lx7 LINE L1 7148 7363 -333 1 993 31 0 0 0 chr1 53596591 53596622 -143598810 + AT_rich Low_complexity Low_complexity 1 31 0 1 993 445 281 91 46 chr1 53597009 53597184 -143598248 + B3A SINE B2 1 183 -15 1 993 273 219 0 0 chr1 53597184 53597257 -143598175 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 993 556 157 0 0 chr1 53598268 53598351 -143597081 + ORR1B2 LTR MaLR 69 151 -216 1 993 276 346 84 101 chr1 53598586 53598808 -143596624 + MLT1C LTR MaLR 127 347 -120 1 993 1595 146 134 18 chr1 53598808 53599137 -143596295 + ORR1B2 LTR MaLR 1 367 0 1 993 276 346 84 101 chr1 53599137 53599261 -143596171 + MLT1C LTR MaLR 348 467 0 1 993 192 135 0 0 chr1 53599868 53599905 -143595527 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 993 1124 88 0 0 chr1 53600929 53601077 -143594355 + B1_Mus1 SINE Alu 1 148 0 1 993 3793 120 97 29 chr1 53602948 53603650 -143591782 + RMER6A LTR ERVK 1 750 -6 1 993 25 65 0 0 chr1 53604841 53604887 -143590545 + AT_rich Low_complexity Low_complexity 1 46 0 1 993 216 167 0 0 chr1 53604997 53605045 -143590387 + GA-rich Low_complexity Low_complexity 1 48 0 1 993 333 295 25 25 chr1 53605427 53605507 -143589925 + RSINE1 SINE B4 65 144 -21 1 993 261 0 0 0 chr1 53605726 53605755 -143589677 + (A)n Simple_repeat Simple_repeat 1 29 0 1 124 35990 48 2 7 chr1 53606501 53612676 -143582756 - L1Md_F2 LINE L1 -3 6579 442 1 994 197 222 22 0 chr1 53613367 53613412 -143582020 - L2c LINE L2 -313 3074 3029 1 994 538 272 45 15 chr1 53613576 53613774 -143581658 - B3 SINE B2 -12 204 1 1 994 270 56 0 0 chr1 53614053 53614089 -143581343 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1 994 378 231 80 36 chr1 53614140 53614164 -143581268 - PB1D10 SINE Alu 0 117 1 1 994 388 241 11 11 chr1 53614164 53614252 -143581180 - ID_B1 SINE B4 -55 169 82 1 994 284 0 28 0 chr1 53614418 53614454 -143580978 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 994 486 237 85 0 chr1 53614768 53614886 -143580546 - RSINE1 SINE B4 -35 130 3 1 994 27 49 0 0 chr1 53615518 53615559 -143579873 + AT_rich Low_complexity Low_complexity 1 41 0 1 994 1671 40 0 0 chr1 53617028 53617229 -143578203 + L1_Mus1 LINE L1 6367 6567 0 1 994 468 0 0 0 chr1 53617675 53617727 -143577705 + (CCTG)n Simple_repeat Simple_repeat 2 53 0 1 994 966 265 44 48 chr1 53617899 53618192 -143577240 + B4A SINE B4 1 292 0 1 994 387 0 0 0 chr1 53619008 53619051 -143576381 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 994 381 22 0 0 chr1 53619128 53619174 -143576258 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 1 994 267 291 13 0 chr1 53619177 53619256 -143576176 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 1 994 245 29 0 29 chr1 53619847 53619882 -143575550 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 994 180 0 0 0 chr1 53620135 53620155 -143575277 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 994 324 103 0 0 chr1 53620155 53620213 -143575219 + (TCTG)n Simple_repeat Simple_repeat 1 58 0 1 994 23 0 0 0 chr1 53620362 53620385 -143575047 + AT_rich Low_complexity Low_complexity 1 23 0 1 994 345 275 170 23 chr1 53620406 53620577 -143574855 + L1MEg LINE L1 1042 1237 -4847 1 994 22 0 0 0 chr1 53620588 53620610 -143574822 + AT_rich Low_complexity Low_complexity 1 22 0 1 994 191 347 92 0 chr1 53621321 53621419 -143574013 - MIRm SINE MIR -6 270 164 1 994 860 294 30 36 chr1 53621485 53621685 -143573747 + Lx8 LINE L1 7026 7234 -239 1 994 185 65 0 31 chr1 53621685 53621717 -143573715 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 994 860 311 28 36 chr1 53621717 53621940 -143573492 + Lx8 LINE L1 7235 7455 -18 1 994 450 0 0 0 chr1 53622422 53622472 -143572960 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 994 1501 143 166 16 chr1 53622812 53623131 -143572301 - ORR1B2 LTR MaLR 0 367 1 1 994 24 32 0 0 chr1 53624164 53624195 -143571237 + AT_rich Low_complexity Low_complexity 1 31 0 1 994 252 143 0 0 chr1 53624313 53624355 -143571077 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 994 511 15 0 29 chr1 53625190 53625260 -143570172 + (TCTCC)n Simple_repeat Simple_repeat 5 72 0 1 994 204 200 0 0 chr1 53625277 53625327 -143570105 + CT-rich Low_complexity Low_complexity 3 52 0 1 994 228 250 66 53 chr1 53625328 53625404 -143570028 + MTEb LTR MaLR 297 373 -6 1 994 350 274 32 58 chr1 53625498 53625653 -143569779 + MLT1A1 LTR MaLR 246 396 -12 1 994 180 77 0 0 chr1 53625937 53625963 -143569469 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 994 518 302 34 77 chr1 53626014 53626411 -143569021 + L1VL1 LINE L1 4 389 -6033 1 994 445 246 16 8 chr1 53626469 53626596 -143568836 + L1Md_F LINE L1 675 802 -5814 1 994 10530 120 10 45 chr1 53626606 53628887 -143566545 + L1Md_F LINE L1 726 2884 -2999 1 994 721 49 0 0 chr1 53628890 53628992 -143566440 + L1_Mus1 LINE L1 6465 6566 -1 1 994 567 0 0 0 chr1 53629334 53629397 -143566035 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 994 956 266 10 5 chr1 53630817 53631128 -143564304 + Lx8 LINE L1 6627 6956 -517 1 994 342 0 0 0 chr1 53631142 53631180 -143564252 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 994 431 330 24 10 chr1 53631215 53631420 -143564012 + Lx8 LINE L1 7135 7342 -131 1 994 2911 94 50 16 chr1 53632269 53632692 -143562740 + RLTR9B LTR ERVK 1 437 0 1 994 296 49 31 62 chr1 53633002 53633067 -143562365 + (TAAAA)n Simple_repeat Simple_repeat 1 63 0 1 994 1579 173 68 100 chr1 53633070 53633558 -143561874 + RLTR45-int LTR ERVK 2070 2541 -4703 1 994 665 225 139 0 chr1 53633554 53633727 -143561705 + RLTR45-int LTR ERVK 2504 2700 -4706 1 994 993 167 94 6 chr1 53633729 53633910 -143561522 + RLTR9B LTR ERVK 241 437 0 1 994 3145 210 141 14 chr1 53635108 53635943 -143559489 + Lx9 LINE L1 6540 7480 -164 1 994 26 0 0 0 chr1 53636096 53636122 -143559310 + AT_rich Low_complexity Low_complexity 1 26 0 1 994 1174 50 0 0 chr1 53636223 53636362 -143559070 + B1_Mus1 SINE Alu 2 140 -8 1 994 260 27 27 0 chr1 53636362 53636399 -143559033 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 994 636 14 0 0 chr1 53636499 53636572 -143558860 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 994 4960 69 14 1 chr1 53636626 53637278 -143558154 + L1_Mus3 LINE L1 5974 6633 -5 1 994 2536 119 32 55 chr1 53637395 53637867 -143557565 - RMER6B LTR ERVK 0 461 1 1 994 2222 138 32 21 chr1 53638228 53638605 -143556827 + RLTR9D LTR ERVK 11 391 -12 1 994 754 236 264 45 chr1 53638885 53639196 -143556236 + MTEb LTR MaLR 1 379 0 1 994 192 349 25 93 chr1 53640052 53640213 -143555219 - L2a LINE L2 0 3426 3277 1 994 841 148 7 0 chr1 53640434 53640576 -143554856 - URR1A DNA MER1_type 0 226 84 1 994 23 33 0 0 chr1 53640576 53640606 -143554826 + AT_rich Low_complexity Low_complexity 1 30 0 1 994 1582 230 82 8 chr1 53641519 53641748 -143553684 - MTD LTR MaLR 0 419 165 1 994 441 66 0 0 chr1 53641748 53641809 -143553623 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 994 1582 230 82 8 chr1 53641809 53641969 -143553463 - MTD LTR MaLR -255 164 1 1 994 9728 145 38 6 chr1 53642486 53645106 -143550326 - Lx LINE L1 -6 6648 3945 1 994 6993 77 10 3 chr1 53645117 53646174 -143549258 - L1_Mus1 LINE L1 0 6567 5495 1 994 6538 98 14 14 chr1 53646172 53647694 -143547738 - L1VL4 LINE L1 -1677 1882 364 1 994 197 197 0 16 chr1 53648115 53648177 -143547255 + CT-rich Low_complexity Low_complexity 1 61 0 1 994 2397 19 101 0 chr1 53649247 53649554 -143545878 + ORR1A0 LTR MaLR 1 338 -8 1 994 306 0 0 0 chr1 53649596 53649630 -143545802 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 994 199 196 89 0 chr1 53649912 53649968 -143545464 + L3 LINE CR1 4429 4489 0 1 994 271 276 133 39 chr1 53650104 53650232 -143545200 - L2a LINE L2 -5 3421 3282 1 994 1018 291 161 7 chr1 53650302 53651189 -143544243 + Tigger1 DNA MER2_type 67 1141 -1277 1 994 1608 148 34 5 chr1 53651189 53651501 -143543931 - RMER6C LTR ERVK 0 690 322 1 994 297 0 0 0 chr1 53651502 53651535 -143543897 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 994 375 23 0 0 chr1 53651535 53651578 -143543854 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 994 264 30 0 0 chr1 53651710 53651743 -143543689 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 994 6254 73 6 15 chr1 53651743 53652621 -143542811 + L1_Mus2 LINE L1 5697 6566 0 2 994 235 281 110 23 chr1 53653054 53653240 -143542192 + L1M4c LINE L1 1631 1850 -4628 2 994 445 219 173 8 chr1 53653296 53653500 -143541932 + L1MA6 LINE L1 5511 5741 -559 2 994 401 263 89 33 chr1 53653508 53653822 -143541610 + L1MA6 LINE L1 5845 6184 -107 2 994 212 0 0 35 chr1 53654738 53654767 -143540665 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 994 624 264 48 0 chr1 53654768 53654893 -143540539 + B1_Mur2 SINE Alu 3 133 -16 2 994 704 139 0 0 chr1 53655085 53655186 -143540246 - B1_Mus2 SINE Alu -7 140 40 2 994 341 238 0 8 chr1 53655197 53655320 -143540112 + CT-rich Low_complexity Low_complexity 2 123 0 2 994 336 138 34 17 chr1 53655349 53655408 -143540024 - B1_Mur4 SINE Alu -90 60 1 2 994 30822 74 4 1 chr1 53655521 53660726 -143534706 + L1Md_F2 LINE L1 366 5586 -297 2 994 7923 47 11 4 chr1 53660726 53661715 -143533717 + L1Md_F2 LINE L1 5587 6582 0 2 994 3143 40 2 17 chr1 53663280 53663336 -143532096 - MTA_Mm LTR MaLR 0 396 346 2 994 2058 109 87 36 chr1 53663336 53663725 -143531707 + RLTR9E LTR ERVK 1 409 0 2 994 3143 40 2 17 chr1 53663725 53664070 -143531362 - MTA_Mm LTR MaLR -51 345 1 2 994 231 287 69 0 chr1 53664086 53664173 -143531259 - MIR SINE MIR -121 141 49 2 994 1620 152 94 99 chr1 53664651 53665046 -143530386 + RLTR9C LTR ERVK 1 393 0 2 994 8544 121 73 12 chr1 53665188 53667366 -143528066 + L1Md_A LINE L1 632 2936 -978 2 994 689 99 8 32 chr1 53667366 53667491 -143527941 + L1Md_F3 LINE L1 6462 6583 -1 2 994 3778 180 34 94 chr1 53667521 53668430 -143527002 + MMETn-int LTR ERVK 108 963 -3881 2 994 6804 32 0 0 chr1 53668430 53669229 -143526203 + L1Md_T LINE L1 5784 6582 0 2 994 3778 180 34 94 chr1 53669229 53669449 -143525983 + MMETn-int LTR ERVK 964 1169 -3675 2 994 2450 172 26 16 chr1 53669476 53669973 -143525459 + MMETn-int LTR ERVK 2496 2997 -4409 2 994 921 145 0 24 chr1 53669973 53670142 -143525290 + RLTR13D1 LTR ERVK 486 650 -156 2 994 3654 163 48 52 chr1 53670689 53671632 -143523800 + MMETn-int LTR ERVK 2404 4085 -3321 2 994 1198 62 0 0 chr1 53671632 53671778 -143523654 - B1_Mus2 SINE Alu 0 147 2 2 994 3842 186 13 52 chr1 53671778 53672948 -143522484 + MMETn-int LTR ERVK 2356 3804 -1602 2 994 473 107 0 0 chr1 53673164 53673239 -143522193 + MMETn-int LTR ERVK 7331 7405 -1 2 994 1672 157 75 97 chr1 53673239 53673641 -143521791 + RLTR9C LTR ERVK 1 393 0 2 994 478 32 0 0 chr1 53674068 53674130 -143521302 + L1_Mus2 LINE L1 6501 6562 -4 2 994 269 281 77 22 chr1 53674267 53674358 -143521074 + B3 SINE B2 107 202 -14 2 994 476 126 11 0 chr1 53674359 53674446 -143520986 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 994 544 296 182 21 chr1 53675429 53675802 -143519630 - L1MA8 LINE L1 -63 6228 5796 2 994 3511 13 5 0 chr1 53675994 53676388 -143519044 - MTA_Mm LTR MaLR 0 396 1 2 994 366 352 19 0 chr1 53677291 53677396 -143518036 - PB1D10 SINE Alu -8 109 3 2 994 192 40 0 0 chr1 53677820 53677845 -143517587 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 994 21 0 0 0 chr1 53678238 53678259 -143517173 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 560 255 20 26 chr1 53679192 53679352 -143516080 + MLT1A1 LTR MaLR 232 408 0 2 994 519 258 0 0 chr1 53680615 53680770 -143514662 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 994 279 247 0 0 chr1 53680782 53680871 -143514561 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 994 713 289 13 9 chr1 53681329 53681513 -143513919 - B3A SINE B2 -1 215 29 2 994 2257 109 11 22 chr1 53681513 53681880 -143513552 - L1_Mus3 LINE L1 -2 6636 6274 2 994 713 281 0 0 chr1 53681880 53681907 -143513525 - B3A SINE B2 -170 28 2 2 994 42 20 0 0 chr1 53682889 53682938 -143512494 + AT_rich Low_complexity Low_complexity 1 49 0 2 994 283 305 45 62 chr1 53684859 53684971 -143510461 + PB1D7 SINE Alu 4 113 -7 2 994 805 200 22 16 chr1 53685184 53685367 -143510065 + B2_Mm2 SINE B2 3 186 -9 2 994 5021 185 108 41 chr1 53685414 53686634 -143508798 + RMER12 LTR ERVK 1 1766 -42 2 994 519 291 7 0 chr1 53687322 53687463 -143507969 + B1F SINE Alu 1 142 -7 2 994 237 65 0 0 chr1 53687582 53687613 -143507819 + (CAT)n Simple_repeat Simple_repeat 3 33 0 2 994 380 245 53 35 chr1 53687695 53687809 -143507623 - PB1D10 SINE Alu 0 117 2 2 994 183 380 51 51 chr1 53689800 53689997 -143505435 + L4 LINE RTE 1460 1656 -373 2 994 646 215 14 0 chr1 53691317 53691461 -143503971 - Lx6 LINE L1 -2 7458 7313 2 994 1969 162 116 5 chr1 53691503 53691882 -143503550 - MTC LTR MaLR 0 421 1 2 994 23 0 0 0 chr1 53691969 53691992 -143503440 + AT_rich Low_complexity Low_complexity 1 23 0 2 994 1311 152 9 39 chr1 53694239 53694472 -143500960 + URR1A DNA MER1_type 1 226 0 2 994 826 311 30 15 chr1 53694499 53694770 -143500662 + B4A SINE B4 4 278 -14 2 994 533 237 195 15 chr1 53694937 53695198 -143500234 + L1M4 LINE L1 2809 3116 -3030 2 994 466 173 12 0 chr1 53695214 53695295 -143500137 - MTC LTR MaLR -339 82 1 2 994 540 291 70 10 chr1 53695296 53695608 -143499824 + L1MB7 LINE L1 5838 6168 -16 2 994 206 235 62 124 chr1 53695973 53696070 -143499362 + MIRm SINE MIR 2 92 -184 2 994 25 90 0 0 chr1 53696385 53696452 -143498980 + AT_rich Low_complexity Low_complexity 1 67 0 2 994 251 265 71 10 chr1 53697453 53697552 -143497880 - MTEb LTR MaLR 0 379 275 2 994 3404 61 14 0 chr1 53698200 53698625 -143496807 - L1_Mus2 LINE L1 -4 6562 6132 2 994 1817 134 50 25 chr1 53698937 53699258 -143496174 - ORR1A4 LTR MaLR 0 329 1 2 994 27 49 0 0 chr1 53699961 53700002 -143495430 + AT_rich Low_complexity Low_complexity 1 41 0 2 994 518 272 104 16 chr1 53700056 53700239 -143495193 + B3 SINE B2 12 210 -6 2 994 233 282 14 40 chr1 53700435 53700509 -143494923 + ZP3AR Satellite Satellite 20 91 -121 2 994 395 238 0 0 chr1 53700462 53700542 -143494890 + BC1_Mm scRNA scRNA 2 81 -71 2 994 22 56 0 0 chr1 53700543 53700579 -143494853 + AT_rich Low_complexity Low_complexity 1 36 0 2 994 947 105 0 0 chr1 53700623 53700756 -143494676 + Lx5 LINE L1 6730 6862 -188 2 994 838 290 101 87 chr1 53701050 53701416 -143494016 - MTE2a LTR MaLR -6 373 3 2 994 387 157 0 0 chr1 53701425 53701495 -143493937 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 994 287 242 16 0 chr1 53701745 53701807 -143493625 + Tigger5 DNA MER2_type 2292 2354 -52 2 994 462 36 0 0 chr1 53702150 53702206 -143493226 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 994 1225 73 11 6 chr1 53702206 53702384 -143493048 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 994 1311 169 52 8 chr1 53702608 53702631 -143492801 + RLTR40 LTR ERVK 1 23 -794 2 994 212 0 0 35 chr1 53702631 53702660 -143492772 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 994 1311 169 52 8 chr1 53702660 53702887 -143492545 + RLTR40 LTR ERVK 24 262 -555 2 994 980 246 20 80 chr1 53702933 53703357 -143492075 + RLTR40 LTR ERVK 480 812 -5 2 994 2016 131 3 64 chr1 53703488 53703831 -143491601 + ORR1A4 LTR MaLR 1 322 -7 2 994 270 202 30 20 chr1 53703890 53703991 -143491441 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 994 2439 67 15 0 chr1 53704268 53704595 -143490837 + L1Md_F3 LINE L1 6251 6582 -2 2 994 410 271 69 8 chr1 53705217 53705232 -143490200 + B1F2 SINE Alu 1 138 -11 2 994 441 234 26 35 chr1 53705232 53705347 -143490085 + ID_B1 SINE B4 100 213 -11 2 994 1089 98 0 0 chr1 53705608 53705751 -143489681 + B1_Mus1 SINE Alu 1 143 -5 2 994 210 158 26 0 chr1 53705751 53705789 -143489643 + GA-rich Low_complexity Low_complexity 2 40 0 2 994 13363 168 24 15 chr1 53705966 53709103 -143486329 + L1_Mur1 LINE L1 890 4056 -1821 2 994 8168 122 11 21 chr1 53709103 53710581 -143484851 + L1Md_A LINE L1 420 1886 -3997 2 994 3993 43 14 0 chr1 53710581 53711067 -143484365 + MT2_Mm LTR ERVL 1 493 0 2 994 8168 66 1 8 chr1 53711067 53711580 -143483852 + L1Md_A LINE L1 1887 2391 -3492 2 994 6722 60 1 13 chr1 53711580 53712452 -143482980 + L1Md_F2 LINE L1 5718 6579 -3 2 994 1232 62 151 6 chr1 53712462 53712641 -143482791 + L1_Mus2 LINE L1 6362 6566 0 2 994 8595 163 37 53 chr1 53712641 53715262 -143480170 + Lx4B LINE L1 1203 4878 -1008 2 994 7773 50 13 0 chr1 53715262 53716232 -143479200 + L1Md_F3 LINE L1 5588 6570 -14 2 994 5993 186 51 20 chr1 53716232 53718304 -143477128 + Lx4B LINE L1 4879 7054 -4 2 994 637 318 23 19 chr1 53718353 53718568 -143476864 - MER58A DNA MER1_type 0 224 9 2 994 325 255 21 11 chr1 53718667 53718762 -143476670 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 994 746 182 75 0 chr1 53719744 53719903 -143475529 + ORR1C2 LTR MaLR 1 171 -213 2 994 903 250 16 16 chr1 53720073 53720260 -143475172 - B3 SINE B2 -27 189 3 2 994 214 276 114 11 chr1 53722090 53722178 -143473254 - MIRb SINE MIR -56 212 116 2 994 491 168 32 0 chr1 53722195 53722290 -143473142 + L1VL1 LINE L1 218 315 -6323 2 994 32177 83 4 6 chr1 53722286 53724889 -143470543 + L1VL1 LINE L1 639 3229 -2654 2 994 7319 55 5 3 chr1 53724889 53725743 -143469689 + RLTR13A LTR ERVK 1 855 0 2 994 32177 96 2 9 chr1 53725743 53728194 -143467238 + L1VL1 LINE L1 3230 5672 -211 2 994 3902 77 2 32 chr1 53728194 53728691 -143466741 - LTRIS_Mm LTR ERV1 0 482 1 2 994 32177 96 2 9 chr1 53728691 53728806 -143466626 + L1VL1 LINE L1 5673 5783 -100 2 994 35531 74 4 9 chr1 53728801 53734410 -143461022 - L1Md_F2 LINE L1 -10 6572 1010 2 994 6200 91 0 5 chr1 53734428 53735231 -143460201 + L1_Mus1 LINE L1 5769 6567 0 2 994 537 55 0 0 chr1 53735430 53735503 -143459929 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 994 426 269 0 0 chr1 53735871 53736016 -143459416 + CT-rich Low_complexity Low_complexity 4 148 0 2 994 561 292 57 16 chr1 53736408 53736697 -143458735 + L1M5 LINE L1 3373 3675 -2471 2 994 347 250 205 20 chr1 53737490 53737739 -143457693 + L1M5 LINE L1 3715 4009 -2137 2 994 242 278 71 60 chr1 53737937 53738121 -143457311 - L1MA8 LINE L1 -143 6148 5963 2 994 4001 257 88 27 chr1 53738113 53739501 -143455931 + Lx9 LINE L1 5831 7433 -211 2 124 198 0 0 0 chr1 53739501 53739523 -143455909 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 995 234 0 0 0 chr1 53739523 53739548 -143455884 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 995 4001 232 86 24 chr1 53739548 53739574 -143455858 + Lx9 LINE L1 7434 7464 -180 2 995 417 20 0 0 chr1 53739582 53739632 -143455800 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 995 207 0 0 0 chr1 53740713 53740736 -143454696 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2 995 510 17 0 0 chr1 53740736 53740795 -143454637 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 3 995 1171 68 0 27 chr1 53741373 53741385 -143454047 - B1_Mm SINE Alu -1 146 138 3 995 207 0 0 0 chr1 53741385 53741408 -143454024 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 995 1171 68 0 27 chr1 53741408 53741545 -143453887 - B1_Mm SINE Alu -10 137 1 3 995 429 289 122 39 chr1 53742364 53742544 -143452888 - B4A SINE B4 -97 195 1 3 995 645 14 0 0 chr1 53742806 53742880 -143452552 + (GAA)n Simple_repeat Simple_repeat 3 76 0 3 995 224 100 25 0 chr1 53742889 53742929 -143452503 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 995 1236 68 7 0 chr1 53742977 53743123 -143452309 + B1_Mus1 SINE Alu 2 148 0 3 995 355 284 94 5 chr1 53743792 53743983 -143451449 - L1MA6 LINE L1 -62 6238 6031 3 995 238 290 92 18 chr1 53744011 53744120 -143451312 - L1MC LINE L1 -2739 3407 3291 3 995 240 61 9 140 chr1 53744150 53744264 -143451168 + T-rich Low_complexity Low_complexity 3 101 0 3 995 437 278 167 21 chr1 53744375 53744614 -143450818 - L1M2 LINE L1 -3101 3042 2769 3 995 364 168 43 193 chr1 53744643 53744783 -143450649 + L1VL1 LINE L1 236 354 -6068 3 995 426 244 23 15 chr1 53744863 53744996 -143450436 + L1Md_F LINE L1 573 706 -5813 3 995 2591 152 3 92 chr1 53745004 53745705 -143449727 + L1Md_F LINE L1 628 1264 -2553 3 995 1173 102 0 7 chr1 53745705 53745853 -143449579 + B1_Mm SINE Alu 1 147 0 3 995 648 38 0 0 chr1 53745860 53745939 -143449493 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 3 995 2325 112 3 46 chr1 53745939 53746163 -143449269 + L1Md_F LINE L1 1265 1480 -2337 3 995 22230 104 13 6 chr1 53746159 53746966 -143448466 + L1_Mus2 LINE L1 2668 3476 -2407 3 995 180 0 0 0 chr1 53746966 53746986 -143448446 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 995 22230 95 11 5 chr1 53746986 53749437 -143445995 + L1_Mus2 LINE L1 3477 5948 -618 3 995 539 196 226 42 chr1 53749437 53749698 -143445734 - RLTR6_Mm LTR ERV1 -70 584 276 3 995 839 142 6 99 chr1 53749711 53749883 -143445549 - RLTR6_Mm LTR ERV1 -498 156 1 3 995 8650 84 43 36 chr1 53749883 53752184 -143443248 - MMVL30-int LTR ERV1 0 3698 960 3 995 5073 89 28 11 chr1 53752259 53752978 -143442454 - MMVL30-int LTR ERV1 -2230 1468 738 3 995 1045 164 19 65 chr1 53753052 53753313 -143442119 - MMVL30-int LTR ERV1 -7526 252 4 3 995 459 203 92 70 chr1 53753336 53753588 -143441844 - RLTR6_Mm LTR ERV1 0 447 223 3 995 839 142 6 99 chr1 53753601 53753773 -143441659 - RLTR6_Mm LTR ERV1 -498 156 1 3 995 4889 78 10 2 chr1 53753773 53754390 -143441042 + L1_Mus2 LINE L1 5945 6566 0 3 995 188 238 146 12 chr1 53754606 53754696 -143440736 - MIRb SINE MIR -85 183 90 3 995 1821 248 32 34 chr1 53754964 53755439 -143439993 + RMER19C LTR ERVK 138 611 0 3 995 405 278 40 96 chr1 53755926 53756171 -143439261 + MER33 DNA MER1_type 1 231 -93 3 995 199 341 114 27 chr1 53756527 53756747 -143438685 - L2a LINE L2 -2 3424 3186 3 995 207 0 0 0 chr1 53758124 53758147 -143437285 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 995 21 0 0 0 chr1 53758153 53758174 -143437258 + AT_rich Low_complexity Low_complexity 1 21 0 3 995 374 278 19 0 chr1 53759028 53759136 -143436296 + L1M4 LINE L1 4207 4316 -1830 3 995 1198 196 140 7 chr1 53759233 53759526 -143435906 - MTD LTR MaLR 0 419 88 3 995 480 82 113 0 chr1 53759541 53759708 -143435724 + L1_Mus3 LINE L1 6520 6638 0 3 995 239 54 27 0 chr1 53759787 53759824 -143435608 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3 995 405 236 65 9 chr1 53759850 53759957 -143435475 + RSINE1 SINE B4 12 124 -41 3 995 434 333 9 18 chr1 53760829 53760939 -143434493 + PB1D10 SINE Alu 2 110 -7 3 995 726 257 84 0 chr1 53761069 53761248 -143434184 + B3 SINE B2 6 199 -17 3 995 902 197 0 0 chr1 53761269 53761411 -143434021 + B1_Mur4 SINE Alu 2 143 -7 3 995 299 156 0 30 chr1 53761412 53761478 -143433954 + (CAT)n Simple_repeat Simple_repeat 1 64 0 3 995 237 194 95 16 chr1 53762736 53762799 -143432633 + MTEa LTR MaLR 288 355 -24 3 995 690 246 78 95 chr1 53762863 53763159 -143432273 - B4A SINE B4 -1 291 1 3 995 423 266 26 26 chr1 53764549 53764665 -143430767 - PB1D10 SINE Alu 0 117 2 3 995 375 247 44 62 chr1 53764673 53764833 -143430599 + L1M3 LINE L1 4615 4771 -1375 3 995 466 269 91 21 chr1 53764815 53765001 -143430431 + L1M3 LINE L1 4875 5073 -1067 3 995 413 229 67 0 chr1 53765008 53765109 -143430323 - B2_Mm2 SINE B2 0 195 88 3 995 424 247 36 48 chr1 53765109 53765275 -143430157 - RLTR43A LTR ERVK 0 364 201 3 995 706 86 0 0 chr1 53765448 53765541 -143429891 - B2_Mm2 SINE B2 -102 93 1 3 995 661 285 0 15 chr1 53765584 53765716 -143429716 - RSINE1 SINE B4 -33 132 3 3 995 246 308 74 15 chr1 53765915 53766050 -143429382 + L1M3 LINE L1 5483 5625 -555 3 995 3237 162 6 26 chr1 53766400 53766939 -143428493 + RLTR12B LTR ERVK 1 528 0 3 995 581 308 52 60 chr1 53766961 53767339 -143428093 + RLTR16 LTR ERVK 32 433 -259 3 995 892 264 86 13 chr1 53768778 53769081 -143426351 - L1MA4 LINE L1 -377 5923 5599 3 995 408 179 0 0 chr1 53769083 53769161 -143426271 + CT-rich Low_complexity Low_complexity 2 79 0 3 995 1456 104 5 0 chr1 53769268 53769460 -143425972 + B2_Mm1t SINE B2 1 193 0 3 995 699 222 0 56 chr1 53769464 53769607 -143425825 - B1_Mur1 SINE Alu -13 136 2 3 995 180 111 0 0 chr1 53771123 53771150 -143424282 + (T)n Simple_repeat Simple_repeat 1 27 0 3 995 342 303 27 27 chr1 53771169 53771281 -143424151 + ID_B1 SINE B4 112 223 -1 3 995 694 237 33 7 chr1 53771288 53771441 -143423991 + RSINE1 SINE B4 3 159 -6 3 995 241 266 16 0 chr1 53771970 53772034 -143423398 + GA-rich Low_complexity Low_complexity 2 66 0 3 995 7370 63 5 1 chr1 53774043 53774969 -143420463 + L1_Mus2 LINE L1 5637 6566 0 3 995 594 0 0 0 chr1 53775098 53775164 -143420268 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 995 1272 49 0 0 chr1 53775165 53775307 -143420125 - B1_Mus1 SINE Alu -6 142 1 3 995 237 272 99 0 chr1 53775320 53775401 -143420031 + L1MC2 LINE L1 6069 6157 -187 3 995 1222 68 0 0 chr1 53775582 53775730 -143419702 + B1_Mus1 SINE Alu 1 148 0 3 995 196 53 53 0 chr1 53775732 53775770 -143419662 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 995 458 236 105 58 chr1 53775781 53775952 -143419480 + L1MC1 LINE L1 6141 6319 -14 3 995 2279 73 37 28 chr1 53776348 53776696 -143418736 - IAPLTR2b LTR ERVK 0 357 1 3 995 659 204 29 7 chr1 53776772 53776910 -143418522 + B1F SINE Alu 1 141 -8 3 995 241 239 99 0 chr1 53776927 53776998 -143418434 + ID2 SINE ID 4 81 -2 3 995 222 192 0 37 chr1 53776998 53777052 -143418380 + GA-rich Low_complexity Low_complexity 1 52 0 3 995 2250 208 19 41 chr1 53777345 53777862 -143417570 - L1_Rod LINE L1 -1490 4357 3852 3 995 257 316 52 13 chr1 53778000 53778077 -143417355 - B1F1 SINE Alu -69 80 1 3 995 408 333 40 40 chr1 53778308 53778508 -143416924 + MER21B LTR ERV1 457 656 -207 3 995 426 36 0 18 chr1 53778913 53778969 -143416463 - ORR1A3 LTR MaLR 0 326 272 3 995 11930 104 12 2 chr1 53778970 53781597 -143413835 - L1_Mus3 LINE L1 -3 6635 3980 3 995 1555 171 32 18 chr1 53781598 53781883 -143413549 - ORR1A3 LTR MaLR -37 289 1 3 995 317 270 9 48 chr1 53782195 53782300 -143413132 - MLT1A1 LTR MaLR -4 404 304 3 995 256 297 59 92 chr1 53782372 53782524 -143412908 - MLT1A1 LTR MaLR -256 152 6 3 995 1261 237 91 9 chr1 53782886 53783226 -143412206 - ORR1D2 LTR MaLR 0 370 3 3 995 293 68 0 22 chr1 53784187 53784232 -143411200 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 3 995 897 217 85 114 chr1 53784839 53785156 -143410276 + RMER2 LTR ERV1 117 424 -143 3 995 342 0 0 0 chr1 53785219 53785257 -143410175 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 995 319 344 100 39 chr1 53786101 53786331 -143409101 - MLT1L LTR MaLR -17 593 350 3 995 186 43 0 0 chr1 53787310 53787333 -143408099 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 995 1194 55 0 0 chr1 53789065 53789211 -143406221 + B1_Mus2 SINE Alu 2 147 0 3 995 261 0 0 0 chr1 53789211 53789240 -143406192 + (A)n Simple_repeat Simple_repeat 1 29 0 3 995 365 314 162 6 chr1 53790092 53790248 -143405184 + MLT1B LTR MaLR 204 372 -18 3 995 235 169 51 0 chr1 53790710 53790769 -143404663 + A-rich Low_complexity Low_complexity 2 63 0 3 995 344 322 107 39 chr1 53791983 53792161 -143403271 + RMER15 LTR ERVL 371 560 -15 3 995 255 300 105 25 chr1 53792258 53792457 -143402975 + ORR1C2 LTR MaLR 30 265 -119 3 995 229 269 72 41 chr1 53792563 53792591 -143402841 - MamRep605 Unknown Unknown -294 582 552 3 995 243 318 115 43 chr1 53792591 53792844 -143402588 - ORR1E LTR MaLR -3 356 86 3 995 298 283 78 64 chr1 53793180 53793399 -143402033 + L1MB7 LINE L1 5955 6176 -8 3 995 345 253 69 0 chr1 53793503 53793586 -143401846 + B4A SINE B4 142 230 -62 3 995 511 335 145 16 chr1 53793586 53793841 -143401591 + B4A SINE B4 2 289 -3 3 995 3127 126 27 19 chr1 53794386 53794905 -143400527 - RLTR28 LTR ERVL -1 523 1 3 995 268 266 109 50 chr1 53796713 53796832 -143398600 + MIRb SINE MIR 13 138 -130 3 995 497 246 340 4 chr1 53798625 53798903 -143396529 + MTEa LTR MaLR 4 373 -6 3 995 303 28 0 0 chr1 53799500 53799536 -143395896 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 995 29 60 0 0 chr1 53800711 53800761 -143394671 + AT_rich Low_complexity Low_complexity 1 50 0 3 995 659 207 88 68 chr1 53801258 53801450 -143393982 - B3A SINE B2 0 198 3 3 995 792 214 50 44 chr1 53801721 53801902 -143393530 - B3A SINE B2 -16 182 1 3 995 2720 100 22 10 chr1 53802790 53803194 -143392238 + RLTR9E LTR ERVK 1 409 0 3 995 667 265 140 62 chr1 53803195 53803553 -143391879 + ETnERV2-int LTR ERVK 2 387 -2927 3 995 4591 148 80 24 chr1 53803563 53804524 -143390908 + ETnERV2-int LTR ERVK 1071 2085 -5321 3 995 4744 136 65 15 chr1 53804554 53805517 -143389915 + ETnERV2-int LTR ERVK 1995 3448 -3958 3 995 222 91 0 0 chr1 53805634 53805667 -143389765 + (C)n Simple_repeat Simple_repeat 1 33 0 3 995 2902 98 22 7 chr1 53805788 53806238 -143389194 + ETnERV2-int LTR ERVK 3441 3897 -3509 3 995 1853 177 28 87 chr1 53806233 53807185 -143388247 + MMETn-int LTR ERVK 2011 3141 -1703 3 995 1511 134 38 11 chr1 53807161 53807425 -143388007 + ETnERV3-int LTR ERVK 5529 5799 -9 3 995 726 44 0 0 chr1 53807425 53807515 -143387917 + (GGAAA)n Simple_repeat Simple_repeat 3 92 0 3 995 2407 164 116 4 chr1 53807522 53808007 -143387425 + RLTR13D6 LTR ERVK 1 539 -363 3 995 1931 146 3 12 chr1 53808037 53808356 -143387076 + Lx4A LINE L1 6743 7058 0 3 995 15490 85 14 14 chr1 53808363 53811403 -143384029 + L1_Mus2 LINE L1 3527 6563 -3 3 995 393 285 98 37 chr1 53811424 53811588 -143383844 - MER82 DNA MER2_type -269 384 211 4 995 571 289 41 21 chr1 53811609 53811754 -143383678 - B1F2 SINE Alu 0 149 2 4 995 218 163 0 39 chr1 53812981 53813032 -143382400 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 4 995 1223 272 36 16 chr1 53815198 53815678 -143379754 - Lx7 LINE L1 -1794 5902 5374 4 995 309 263 26 0 chr1 53816050 53816126 -143379306 - ID4 SINE ID -4 79 2 4 995 1246 41 0 0 chr1 53816389 53816536 -143378896 + B1_Mm SINE Alu 1 147 0 4 995 35 0 0 0 chr1 53817777 53817812 -143377620 + AT_rich Low_complexity Low_complexity 1 35 0 4 995 2460 133 130 2 chr1 53818914 53819360 -143376072 + RMER1A Other Other 521 1023 -7 4 995 222 37 0 0 chr1 53821263 53821290 -143374142 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 995 324 0 0 0 chr1 53821290 53821325 -143374107 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 995 181 167 107 36 chr1 53822377 53822433 -143372999 - L2 LINE L2 -2792 627 568 4 995 355 298 165 0 chr1 53823444 53823602 -143371830 + Charlie7 DNA MER1_type 102 285 -2327 4 995 27 0 0 0 chr1 53824718 53824745 -143370687 + AT_rich Low_complexity Low_complexity 1 27 0 4 995 219 36 0 0 chr1 53824861 53824889 -143370543 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 995 21 0 0 0 chr1 53824938 53824959 -143370473 + AT_rich Low_complexity Low_complexity 1 21 0 4 995 239 250 0 0 chr1 53825071 53825123 -143370309 + A-rich Low_complexity Low_complexity 2 53 0 4 995 1120 98 6 6 chr1 53825124 53825298 -143370134 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 4 995 229 173 24 47 chr1 53825677 53825762 -143369670 + L1MC4 LINE L1 7086 7168 -874 4 995 922 151 7 0 chr1 53825950 53826096 -143369336 + B1_Mus1 SINE Alu 2 148 0 4 995 1399 81 0 16 chr1 53827002 53827191 -143368241 + B2_Mm2 SINE B2 2 187 -8 4 995 591 311 87 18 chr1 53827338 53827567 -143367865 + B4A SINE B4 43 287 -5 4 995 214 206 0 0 chr1 53830191 53830225 -143365207 + MIRm SINE MIR 167 200 -76 4 995 490 167 0 18 chr1 53830358 53830468 -143364964 + CT-rich Low_complexity Low_complexity 2 109 0 4 995 529 116 221 47 chr1 53830484 53830611 -143364821 - B1_Mur4 SINE Alu -1 149 1 4 995 228 420 14 27 chr1 53832095 53832242 -143363190 + L3 LINE CR1 3981 4125 -364 4 995 445 275 112 24 chr1 53832935 53833140 -143362292 - MIR SINE MIR -3 259 37 4 995 309 306 130 105 chr1 53834657 53834942 -143360490 - MLT1A LTR MaLR 0 374 83 4 995 334 285 19 116 chr1 53834988 53835143 -143360289 + B1F1 SINE Alu 2 141 -8 4 995 806 242 67 27 chr1 53835197 53835422 -143360010 + MLT1B LTR MaLR 1 234 -156 4 995 406 268 138 0 chr1 53835445 53835568 -143359864 - B1F SINE Alu -6 143 4 4 995 21 36 0 0 chr1 53835615 53835643 -143359789 + AT_rich Low_complexity Low_complexity 1 28 0 4 995 344 288 104 18 chr1 53836715 53836878 -143358554 + Lx8 LINE L1 7294 7470 -3 4 995 291 71 0 0 chr1 53836879 53836921 -143358511 + (TATG)n Simple_repeat Simple_repeat 3 44 0 4 995 187 354 186 27 chr1 53838304 53838487 -143356945 + L2b LINE L2 2982 3193 -182 4 995 190 0 0 62 chr1 53838859 53838891 -143356541 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 4 995 513 261 146 107 chr1 53839890 53839978 -143355454 + ID_B1 SINE B4 11 223 0 4 995 632 205 26 0 chr1 53839978 53840095 -143355337 + PB1D9 SINE Alu 1 120 0 4 995 471 280 51 0 chr1 53840516 53840634 -143354798 - RSINE1 SINE B4 -31 134 11 4 995 189 0 0 0 chr1 53840655 53840676 -143354756 + (A)n Simple_repeat Simple_repeat 1 21 0 4 995 26 0 0 0 chr1 53842127 53842153 -143353279 + GC_rich Low_complexity Low_complexity 1 26 0 4 995 873 157 0 0 chr1 53842648 53842801 -143352631 + CT-rich Low_complexity Low_complexity 1 153 0 4 995 259 273 78 0 chr1 53842801 53842878 -143352554 - ID4 SINE ID 0 83 1 4 995 721 274 59 52 chr1 53843539 53843828 -143351604 - B4A SINE B4 0 292 2 4 995 290 26 0 25 chr1 53843844 53843884 -143351548 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 995 587 240 48 48 chr1 53843891 53844079 -143351353 - B3A SINE B2 -10 188 1 4 995 1031 238 49 115 chr1 53844288 53844670 -143350762 - MTE2a LTR MaLR -19 377 1 4 995 1080 211 9 14 chr1 53845031 53845247 -143350185 - MTC LTR MaLR 0 421 207 4 995 2156 174 48 5 chr1 53845562 53845954 -143349478 - MTD LTR MaLR -8 411 3 4 995 310 284 115 0 chr1 53846421 53846569 -143348863 - Charlie5 DNA MER1_type 0 2624 2460 4 995 249 298 24 12 chr1 53846633 53846718 -143348714 - Charlie5 DNA MER1_type -289 2335 2250 4 995 6735 64 1 9 chr1 53847315 53848227 -143347205 - L1_Mus2 LINE L1 0 6566 5662 4 995 195 248 206 56 chr1 53848680 53848787 -143346645 + MIRb SINE MIR 125 247 -21 4 995 2734 93 3 3 chr1 53849461 53849848 -143345584 + MTB LTR MaLR 14 400 0 4 995 470 241 28 0 chr1 53850041 53850149 -143345283 + MIR SINE MIR 62 172 -90 4 995 1202 304 138 23 chr1 53850623 53851633 -143343799 + L1MC3 LINE L1 6502 7627 -158 4 995 392 328 86 6 chr1 53852071 53852246 -143343186 + Charlie1b DNA MER1_type 43 231 -292 4 995 361 266 146 47 chr1 53852263 53852476 -143342956 + Charlie1b DNA MER1_type 290 523 0 4 995 234 353 120 48 chr1 53852607 53852857 -143342575 + MLT1N2 LTR MaLR 156 423 -139 4 995 269 26 26 0 chr1 53853057 53853095 -143342337 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 995 228 161 0 0 chr1 53855161 53855223 -143340209 + A-rich Low_complexity Low_complexity 1 62 0 4 995 203 152 0 0 chr1 53855582 53855615 -143339817 + G-rich Low_complexity Low_complexity 3 35 0 4 995 411 21 0 0 chr1 53856029 53856077 -143339355 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 4 995 883 319 40 83 chr1 53856380 53856681 -143338751 + B4 SINE B4 2 289 -3 4 995 353 22 22 0 chr1 53856703 53856749 -143338683 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 995 504 0 0 0 chr1 53857335 53857391 -143338041 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 995 445 248 96 15 chr1 53857915 53858023 -143337409 + L1_Rod LINE L1 5638 5793 -375 4 995 186 43 0 0 chr1 53858023 53858046 -143337386 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 995 445 257 23 6 chr1 53858046 53858127 -143337305 + L1_Rod LINE L1 5729 5812 -35 4 995 1718 198 66 55 chr1 53858153 53858608 -143336824 + RLTR20B3 LTR ERVK 21 480 -97 4 995 261 93 56 0 chr1 53858609 53858663 -143336769 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 995 200 117 0 94 chr1 53858684 53858769 -143336663 + (TTATA)n Simple_repeat Simple_repeat 2 78 0 4 995 740 299 43 0 chr1 53859335 53859522 -143335910 - ID_B1 SINE B4 -21 203 9 4 995 2156 151 17 44 chr1 53859853 53860119 -143335313 + RMER10B LTR ERVL 1 256 -142 4 995 1020 125 0 0 chr1 53860119 53860279 -143335153 + (TC)n Simple_repeat Simple_repeat 2 161 0 4 995 2156 151 17 44 chr1 53860279 53860421 -143335011 + RMER10B LTR ERVL 257 398 0 4 995 538 306 55 15 chr1 53860486 53860657 -143334775 - L1MC3 LINE L1 -25 7760 7574 4 995 1461 151 0 8 chr1 53860657 53860918 -143334514 - Lx LINE L1 -6 6648 6390 4 995 538 306 55 15 chr1 53860918 53861075 -143334357 - L1MC3 LINE L1 -212 7573 7419 4 995 234 245 0 0 chr1 53861143 53861196 -143334236 - L1MC3 LINE L1 -595 7190 7138 4 995 227 256 0 0 chr1 53861327 53861370 -143334062 - RSINE1 SINE B4 -118 47 5 4 995 319 244 108 42 chr1 53861406 53861526 -143333906 - L1MC3 LINE L1 -900 6982 6855 4 995 980 219 36 5 chr1 53862450 53862643 -143332789 + B3 SINE B2 1 199 -17 4 995 923 330 25 3 chr1 53862825 53863108 -143332324 - MLT1A0 LTR MaLR -3 362 74 4 995 760 168 20 27 chr1 53863110 53863257 -143332175 - B1_Mur4 SINE Alu -1 149 4 4 995 294 216 0 0 chr1 53870237 53870311 -143325121 + (CGTG)n Simple_repeat Simple_repeat 1 74 0 4 124 1663 191 29 95 chr1 53870405 53870857 -143324575 + RLTR11A LTR ERVK 107 528 0 4 996 198 0 0 0 chr1 53871283 53871305 -143324127 + (T)n Simple_repeat Simple_repeat 1 22 0 4 996 3185 54 0 19 chr1 53871634 53872047 -143323385 - L1Md_F2 LINE L1 -1 6581 6177 4 996 335 323 73 46 chr1 53872068 53872293 -143323139 + MIRb SINE MIR 3 238 -30 4 996 252 111 0 0 chr1 53872586 53872631 -143322801 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 996 180 0 0 0 chr1 53872847 53872867 -143322565 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 996 234 288 76 0 chr1 53873191 53873257 -143322175 + MTE2b LTR MaLR 22 92 -287 4 996 948 309 101 0 chr1 53873257 53873555 -143321877 + MTE2b LTR MaLR 52 379 0 4 996 928 262 90 23 chr1 53873627 53874017 -143321415 - L1MB3 LINE L1 -187 5996 5581 4 996 1225 34 0 7 chr1 53874021 53874170 -143321262 + B1_Mus1 SINE Alu 1 148 0 4 996 1008 68 0 0 chr1 53875182 53875315 -143320117 + (GA)n Simple_repeat Simple_repeat 1 133 0 4 996 976 105 8 0 chr1 53876121 53876254 -143319178 + B1_Mus1 SINE Alu 5 138 -10 4 996 198 0 0 0 chr1 53876255 53876277 -143319155 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 4 996 1128 89 0 20 chr1 53876629 53876778 -143318654 + B1_Mus1 SINE Alu 2 147 -1 4 996 195 42 0 0 chr1 53876822 53876846 -143318586 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 996 250 0 73 24 chr1 53878307 53878348 -143317084 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 996 1242 48 0 0 chr1 53878357 53878503 -143316929 - B1_Mus1 SINE Alu -1 147 2 4 996 228 261 40 92 chr1 53879369 53879445 -143315987 - MT2B LTR ERVL -363 238 167 4 996 229 301 19 86 chr1 53880287 53880394 -143315038 + PB1D10 SINE Alu 5 110 -39 4 996 405 39 0 0 chr1 53881625 53881676 -143313756 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 996 186 342 32 40 chr1 53882105 53882230 -143313202 - MIR SINE MIR -68 140 17 4 996 1468 162 187 15 chr1 53882442 53882774 -143312658 + MTD LTR MaLR 1 389 -30 4 996 748 212 237 3 chr1 53882823 53882951 -143312481 - Lx9 LINE L1 -6 7638 7480 4 996 306 0 0 0 chr1 53882951 53882985 -143312447 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 996 748 212 237 3 chr1 53882985 53883168 -143312264 - Lx9 LINE L1 -165 7479 7255 4 996 762 148 80 6 chr1 53883174 53883337 -143312095 + L1_Rod LINE L1 1790 1964 -3883 5 996 30 0 0 0 chr1 53883641 53883671 -143311761 + AT_rich Low_complexity Low_complexity 1 30 0 5 996 484 215 0 0 chr1 53885372 53885451 -143309981 + ID2 SINE ID 3 81 -2 5 996 28 0 0 0 chr1 53885479 53885507 -143309925 + AT_rich Low_complexity Low_complexity 1 28 0 5 996 796 34 240 25 chr1 53886636 53886648 -143308784 - B1_Mus1 SINE Alu 0 148 139 5 996 225 0 0 0 chr1 53886648 53886673 -143308759 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 996 796 34 240 25 chr1 53886673 53886781 -143308651 - B1_Mus1 SINE Alu -10 138 2 5 996 242 264 45 108 chr1 53887274 53887431 -143308001 - MIRm SINE MIR -99 177 31 5 996 1072 174 59 15 chr1 53888603 53888807 -143306625 - URR1B DNA MER1_type 0 225 13 5 996 38 0 0 0 chr1 53889079 53889117 -143306315 + AT_rich Low_complexity Low_complexity 1 38 0 5 996 250 87 0 42 chr1 53890424 53890472 -143304960 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 996 248 284 107 13 chr1 53890679 53890754 -143304678 + PB1D10 SINE Alu 29 110 -7 5 996 251 194 92 53 chr1 53891545 53891621 -143303811 + MTE2b LTR MaLR 3 81 -298 5 996 880 167 21 21 chr1 53891870 53892088 -143303344 + MYSERV16_I-int LTR ERVK 1 153 -2173 5 996 5945 164 123 109 chr1 53892090 53893628 -143301804 + MYSERV16_I-int LTR ERVK 317 2023 -303 5 996 1300 69 40 6 chr1 53893628 53893802 -143301630 - B2_Mm2 SINE B2 -14 181 2 5 996 5945 164 123 109 chr1 53893802 53894095 -143301337 + MYSERV16_I-int LTR ERVK 2024 2325 -1 5 996 2415 198 40 20 chr1 53894098 53894592 -143300840 + RLTR20B2 LTR ERVK 3 506 -54 5 996 327 302 46 8 chr1 53897244 53897374 -143298058 + Tigger16b DNA Tigger 200 334 -3 5 996 243 0 0 0 chr1 53898645 53898672 -143296760 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 996 423 107 0 0 chr1 53898672 53898747 -143296685 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 996 757 251 83 40 chr1 53898748 53898976 -143296456 - B4 SINE B4 -19 273 36 5 996 516 276 24 0 chr1 53899002 53899125 -143296307 - B1_Mur1 SINE Alu -22 127 2 5 996 1474 263 90 10 chr1 53900419 53900807 -143294625 + MTD LTR MaLR 1 419 0 5 996 208 360 79 16 chr1 53900828 53900955 -143294477 - MIR3 SINE MIR -42 166 32 5 996 500 314 56 19 chr1 53901034 53901248 -143294184 + MER58A DNA MER1_type 3 224 0 5 996 2698 129 7 14 chr1 53901650 53902074 -143293358 + MTC LTR MaLR 1 421 0 5 996 299 85 21 0 chr1 53902577 53902624 -143292808 + (TCC)n Simple_repeat Simple_repeat 3 50 0 5 996 314 305 74 55 chr1 53905086 53905249 -143290183 + LTR31 LTR ERV1 122 287 -332 5 996 587 299 151 20 chr1 53905471 53905641 -143289791 - L1MC3 LINE L1 -142 7643 7466 5 996 183 42 0 0 chr1 53905641 53905665 -143289767 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 996 587 299 151 20 chr1 53905665 53905944 -143289488 - L1MC3 LINE L1 -320 7465 7135 5 996 1186 55 0 0 chr1 53906029 53906175 -143289257 + B1_Mm SINE Alu 2 147 0 5 996 180 0 0 0 chr1 53906178 53906198 -143289234 + (A)n Simple_repeat Simple_repeat 1 20 0 5 996 358 310 76 17 chr1 53906680 53906798 -143288634 + PB1 SINE Alu 1 125 -2 5 996 358 313 39 54 chr1 53907381 53907563 -143287869 + ID_B1 SINE B4 83 269 -23 5 996 228 100 0 0 chr1 53908136 53908176 -143287256 + (A)n Simple_repeat Simple_repeat 1 40 0 5 996 552 15 0 0 chr1 53908817 53908882 -143286550 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 996 393 116 0 0 chr1 53908888 53908957 -143286475 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 996 414 0 0 0 chr1 53909080 53909126 -143286306 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 996 405 0 0 0 chr1 53910254 53910299 -143285133 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 996 21 0 0 0 chr1 53910697 53910718 -143284714 + AT_rich Low_complexity Low_complexity 1 21 0 5 996 207 100 0 0 chr1 53911031 53911061 -143284371 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 996 244 274 56 19 chr1 53911081 53911189 -143284243 - PB1D10 SINE Alu 0 117 6 5 996 250 301 67 84 chr1 53911291 53911469 -143283963 + MER102b DNA MER1_type 1 175 -166 5 996 1446 252 34 14 chr1 53911681 53912039 -143283393 + MTEa LTR MaLR 15 379 0 5 996 1933 148 43 9 chr1 53912227 53912574 -143282858 + RLTR15 LTR ERVK 1 359 0 5 996 185 338 0 42 chr1 53912959 53913030 -143282402 - MIR SINE MIR -77 185 118 5 996 664 280 11 6 chr1 53913464 53913640 -143281792 + MER5B DNA MER1_type 1 177 -1 5 996 337 284 91 9 chr1 53914264 53914374 -143281058 - ID_B1 SINE B4 -22 202 84 5 996 243 222 226 36 chr1 53915019 53915103 -143280329 - PB1D10 SINE Alu -13 104 5 5 996 33 0 0 0 chr1 53915395 53915428 -143280004 + AT_rich Low_complexity Low_complexity 1 33 0 5 996 468 0 0 0 chr1 53915715 53915767 -143279665 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 996 559 253 20 20 chr1 53916103 53916252 -143279180 - B1F SINE Alu 0 149 1 5 996 252 0 0 0 chr1 53916514 53916542 -143278890 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 996 1822 166 89 26 chr1 53916691 53917117 -143278315 + RLTR11B LTR ERVK 1 453 0 5 996 628 119 9 9 chr1 53918961 53919071 -143276361 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 5 996 297 0 0 0 chr1 53919621 53919654 -143275778 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 996 1772 157 21 50 chr1 53920150 53920572 -143274860 + RMER17C LTR ERVK 1 410 0 5 996 235 273 92 83 chr1 53920736 53920856 -143274576 - BC1_Mm scRNA scRNA -31 121 1 5 996 203 275 86 60 chr1 53920996 53921112 -143274320 + L2b LINE L2 3245 3363 -12 5 996 432 0 0 0 chr1 53924002 53924050 -143271382 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 996 558 52 13 0 chr1 53924079 53924156 -143271276 + B1_Mm SINE Alu 70 147 0 5 996 633 162 101 14 chr1 53924181 53924319 -143271113 + B1_Mur4 SINE Alu 1 150 0 5 996 1160 82 7 0 chr1 53924541 53924687 -143270745 + B1_Mus2 SINE Alu 1 147 0 5 996 1851 142 75 57 chr1 53924953 53925342 -143270090 + RMER10B LTR ERVL 3 398 0 5 996 313 194 111 0 chr1 53925945 53926017 -143269415 + ID SINE ID 4 83 -141 5 996 375 183 19 5 chr1 53925955 53926025 -143269407 + ID4_ SINE ID 20 89 -63 5 996 1135 68 14 0 chr1 53926025 53926171 -143269261 + B1_Mus1 SINE Alu 1 148 0 5 996 275 261 48 48 chr1 53926171 53926225 -143269207 + BC1_Mm scRNA scRNA 90 144 -8 5 996 28 0 0 0 chr1 53926543 53926571 -143268861 + AT_rich Low_complexity Low_complexity 1 28 0 5 996 387 0 0 0 chr1 53926762 53926805 -143268627 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 996 22 70 0 0 chr1 53926913 53926956 -143268476 + AT_rich Low_complexity Low_complexity 1 43 0 5 996 2071 169 60 16 chr1 53927428 53927812 -143267620 + MTB_Mm LTR MaLR 5 405 -2 5 996 5913 151 85 33 chr1 53927815 53928869 -143266563 + MTB_Mm-int LTR MaLR 4 1099 -159 5 996 1190 48 0 20 chr1 53928869 53929017 -143266415 - B1_Mus2 SINE Alu 0 147 3 5 996 5913 151 85 33 chr1 53929017 53929155 -143266277 + MTB_Mm-int LTR MaLR 1100 1258 0 5 996 2104 154 20 14 chr1 53929156 53929511 -143265921 + MTB_Mm LTR MaLR 8 364 -43 5 996 180 0 0 0 chr1 53929951 53929971 -143265461 + (A)n Simple_repeat Simple_repeat 1 20 0 5 996 216 0 0 0 chr1 53930335 53930359 -143265073 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 5 996 461 174 32 11 chr1 53930364 53930457 -143264975 - B1_Mur3 SINE Alu -5 144 50 5 996 1637 213 25 47 chr1 53931400 53931765 -143263667 - RMER10B LTR ERVL -41 357 1 5 996 294 217 69 46 chr1 53931908 53931995 -143263437 + MT2B LTR ERVL 169 257 -344 5 996 765 107 18 0 chr1 53931923 53932035 -143263397 + B1_Mur4 SINE Alu 32 145 -5 5 996 348 51 51 0 chr1 53932786 53932845 -143262587 + (CAA)n Simple_repeat Simple_repeat 2 63 0 5 996 1171 122 142 0 chr1 53933453 53933650 -143261782 + URR1A DNA MER1_type 2 226 0 5 996 258 32 0 0 chr1 53934132 53934163 -143261269 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 5 996 258 190 126 31 chr1 53934173 53934396 -143261036 - RMER17D LTR ERVK -377 512 269 5 996 559 227 117 0 chr1 53934385 53934513 -143260919 - B3A SINE B2 -55 143 1 5 996 322 241 25 25 chr1 53934530 53934611 -143260821 + Tigger7 DNA MER2_type 37 117 -2374 5 996 286 272 64 17 chr1 53934613 53934802 -143260630 + Tigger7 DNA MER2_type 2279 2487 -4 5 996 783 166 43 101 chr1 53935753 53935941 -143259491 - B2_Mm2 SINE B2 -18 177 1 5 996 922 150 249 0 chr1 53935967 53936140 -143259292 - B3 SINE B2 0 216 1 5 996 1219 34 0 7 chr1 53936878 53937026 -143258406 - B1_Mus2 SINE Alu 0 147 1 5 996 4562 65 0 0 chr1 53937066 53937636 -143257796 - L1_Mus1 LINE L1 0 6567 5998 5 996 1398 73 17 0 chr1 53938149 53938327 -143257105 - B2_Mm2 SINE B2 -14 181 1 5 996 478 288 95 26 chr1 53938354 53938543 -143256889 - B3 SINE B2 -7 209 8 5 996 288 155 28 14 chr1 53940078 53940150 -143255282 + CT-rich Low_complexity Low_complexity 2 74 0 5 996 320 0 25 0 chr1 53940150 53940190 -143255242 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 996 682 255 32 132 chr1 53941102 53941481 -143253951 + RLTR15 LTR ERVK 1 341 -18 5 996 22 0 0 0 chr1 53942293 53942315 -143253117 + AT_rich Low_complexity Low_complexity 1 22 0 5 996 473 228 21 11 chr1 53942594 53942687 -143252745 + PB1D10 SINE Alu 14 107 -10 5 996 273 57 0 0 chr1 53942687 53942722 -143252710 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 5 996 498 183 192 0 chr1 53943665 53943785 -143251647 - U1 snRNA snRNA -22 143 1 5 996 23 86 0 0 chr1 53945352 53945410 -143250022 + AT_rich Low_complexity Low_complexity 1 58 0 5 996 205 336 52 39 chr1 53945486 53945641 -143249791 + L2c LINE L2 3106 3262 -125 5 996 340 241 17 43 chr1 53945787 53945904 -143249528 - RSINE1 SINE B4 -3 162 49 5 996 21 57 0 0 chr1 53945989 53946024 -143249408 + AT_rich Low_complexity Low_complexity 1 35 0 5 996 198 0 0 0 chr1 53947867 53947889 -143247543 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 996 247 333 18 18 chr1 53948419 53948532 -143246900 + PB1D10 SINE Alu 3 115 -2 6 996 35 0 0 0 chr1 53948892 53948927 -143246505 + AT_rich Low_complexity Low_complexity 1 35 0 6 996 207 117 15 77 chr1 53949294 53949359 -143246073 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 6 996 1135 155 51 16 chr1 53949920 53950176 -143245256 + RMER10B LTR ERVL 1 265 -133 6 996 699 179 17 72 chr1 53950159 53950340 -143245092 + RMER10B LTR ERVL 194 364 -34 6 996 28 61 0 0 chr1 53952925 53952974 -143242458 + AT_rich Low_complexity Low_complexity 1 49 0 6 996 213 94 0 0 chr1 53953221 53953253 -143242179 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 6 996 1557 173 35 23 chr1 53953798 53954140 -143241292 + RMER12 LTR ERVK 1 335 -1513 6 996 1773 94 21 3 chr1 53954199 53954487 -143240945 + RMER12 LTR ERVK 473 765 -557 6 996 1059 88 52 4 chr1 53954571 53954757 -143240675 - B2_Mm2 SINE B2 -4 191 3 6 996 446 154 74 98 chr1 53954757 53954857 -143240575 + RMER12 LTR ERVK 1103 1199 -123 6 996 22 56 0 0 chr1 53955461 53955497 -143239935 + AT_rich Low_complexity Low_complexity 1 36 0 6 996 225 0 0 0 chr1 53955511 53955536 -143239896 + (TAGG)n Simple_repeat Simple_repeat 4 28 0 6 996 411 289 17 26 chr1 53955542 53955659 -143239773 - RSINE1 SINE B4 -36 129 14 6 996 441 295 78 55 chr1 53956844 53957063 -143238369 + MLT1A0 LTR MaLR 61 284 -81 6 996 1577 245 138 12 chr1 53957260 53957846 -143237586 - L1MB8 LINE L1 -9 6169 5510 6 996 925 216 54 5 chr1 53957958 53958163 -143237269 - B3 SINE B2 0 216 2 6 996 240 35 0 0 chr1 53958267 53958296 -143237136 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 996 689 224 31 6 chr1 53958408 53958570 -143236862 + B3 SINE B2 47 212 -4 6 996 326 61 20 0 chr1 53958701 53958750 -143236682 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 6 996 570 215 43 22 chr1 53959009 53959147 -143236285 - B1F SINE Alu -7 142 2 6 996 195 51 0 93 chr1 53959577 53959620 -143235812 + L2c LINE L2 3042 3080 -307 6 996 1060 145 15 30 chr1 53959936 53960135 -143235297 + URR1B DNA MER1_type 28 223 -2 6 996 310 341 53 9 chr1 53960209 53960434 -143234998 + MIR SINE MIR 17 251 -11 6 996 528 59 0 0 chr1 53960895 53960963 -143234469 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 6 996 304 182 0 38 chr1 53962814 53962894 -143232538 + GA-rich Low_complexity Low_complexity 1 77 0 6 996 196 185 37 0 chr1 53963883 53963937 -143231495 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 996 374 0 22 0 chr1 53964522 53964568 -143230864 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 996 275 71 24 0 chr1 53965741 53965783 -143229649 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 996 1206 61 0 0 chr1 53965788 53965935 -143229497 - B1_Mm SINE Alu 0 147 1 6 996 189 0 0 0 chr1 53967023 53967044 -143228388 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6 996 337 259 54 27 chr1 53967167 53967278 -143228154 + MER63D DNA AcHobo 301 414 -647 6 996 464 291 73 22 chr1 53967752 53967931 -143227501 - ID_B1 SINE B4 -15 209 22 6 996 289 312 34 47 chr1 53969718 53969866 -143225566 + MLT1A1 LTR MaLR 238 383 -25 6 996 21 0 0 0 chr1 53972395 53972416 -143223016 + AT_rich Low_complexity Low_complexity 1 21 0 6 996 515 16 0 15 chr1 53973104 53973110 -143222322 + (GAA)n Simple_repeat Simple_repeat 1 6 0 6 996 1452 44 0 0 chr1 53973110 53973290 -143222142 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 996 515 16 0 15 chr1 53973290 53973348 -143222084 + (GAA)n Simple_repeat Simple_repeat 1 58 0 6 996 189 0 0 0 chr1 53974721 53974742 -143220690 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 6 996 23054 59 6 2 chr1 53974791 53977706 -143217726 + L1Md_F2 LINE L1 2661 5586 -297 6 996 8103 52 0 4 chr1 53977707 53978756 -143216676 + L1Md_F2 LINE L1 5588 6582 0 6 996 33 0 0 0 chr1 53978760 53978793 -143216639 + AT_rich Low_complexity Low_complexity 1 33 0 6 996 320 215 19 0 chr1 53980931 53981020 -143214412 + PB1D10 SINE Alu 18 110 -10 6 996 403 245 27 27 chr1 53981940 53982087 -143213345 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 6 996 183 129 0 0 chr1 53982240 53982271 -143213161 + (CAG)n Simple_repeat Simple_repeat 1 31 0 6 996 267 114 0 0 chr1 53984237 53984281 -143211151 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 996 258 156 0 0 chr1 53984748 53984793 -143210639 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 996 203 306 42 0 chr1 53985326 53985398 -143210034 + L2b LINE L2 3274 3348 -27 6 996 295 351 17 34 chr1 53985591 53985709 -143209723 + MIRm SINE MIR 160 275 -1 6 996 189 254 17 17 chr1 53986815 53986875 -143208557 - MIRm SINE MIR -110 166 107 6 996 189 196 53 18 chr1 53987000 53987057 -143208375 + MIRm SINE MIR 25 83 -193 6 996 332 127 0 0 chr1 53988247 53988302 -143207130 - MER96B DNA hAT -209 208 154 6 996 411 312 35 40 chr1 53989529 53989756 -143205676 + MER96B DNA hAT 191 416 -1 6 996 272 286 12 23 chr1 53990136 53990222 -143205210 + GA-rich Low_complexity Low_complexity 3 87 0 6 996 241 185 15 15 chr1 53990606 53990672 -143204760 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 996 233 244 21 104 chr1 53993339 53993435 -143201997 - Charlie9 DNA MER1_type 0 2757 2670 6 996 264 185 0 0 chr1 53994352 53994406 -143201026 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 996 239 158 0 0 chr1 53994440 53994478 -143200954 - PB1D7 SINE Alu -9 111 74 6 996 294 305 59 35 chr1 53994475 53994637 -143200795 + MER31A LTR ERV1 102 265 -201 6 996 284 311 70 23 chr1 53994605 53994746 -143200686 - B1F2 SINE Alu 0 149 1 6 996 680 277 89 79 chr1 53995266 53995670 -143199762 + MER31B LTR ERV1 15 422 -44 6 996 663 13 0 0 chr1 53995923 53995999 -143199433 + (TTCTC)n Simple_repeat Simple_repeat 2 77 0 6 996 1077 270 24 40 chr1 53995999 53996296 -143199136 - B4 SINE B4 0 292 1 6 996 418 271 37 9 chr1 53996672 53996780 -143198652 - PB1D10 SINE Alu -6 111 1 6 996 1150 82 7 0 chr1 53998132 53998279 -143197153 - B1_Mus1 SINE Alu 0 148 1 6 996 333 0 0 0 chr1 53998726 53998763 -143196669 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 996 311 287 42 11 chr1 53999809 53999904 -143195528 - B1F SINE Alu -15 134 37 6 996 261 0 0 0 chr1 54000873 54000902 -143194530 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 996 584 106 47 12 chr1 54000902 54001074 -143194358 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 996 444 86 0 0 chr1 54001108 54001178 -143194254 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 3 996 776 170 40 66 chr1 54001188 54001339 -143194093 - B1_Mur3 SINE Alu -2 147 1 4 997 647 317 8 42 chr1 54003987 54004224 -143191208 - B4A SINE B4 -62 230 2 5 997 1372 186 28 41 chr1 54004631 54004950 -143190482 + Lx7 LINE L1 7356 7670 -26 6 997 747 0 0 0 chr1 54005237 54005320 -143190112 + (GAA)n Simple_repeat Simple_repeat 2 84 0 7 997 797 255 176 21 chr1 54005868 54006249 -143189183 + Lx7 LINE L1 7257 7696 0 8 997 508 101 22 0 chr1 54006282 54006371 -143189061 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 9 997 462 296 69 17 chr1 54006381 54006556 -143188876 + RMER5 LTR ERV1 350 533 -1 1 997 24 0 0 0 chr1 54007479 54007503 -143187929 + AT_rich Low_complexity Low_complexity 1 24 0 1 997 438 264 36 0 chr1 54009830 54009940 -143185492 + PB1D10 SINE Alu 1 114 -3 1 997 1068 270 84 14 chr1 54010480 54010826 -143184606 + L1M1 LINE L1 5414 5783 -517 1 997 6065 140 2 13 chr1 54010894 54012336 -143183096 + L1_Mur1 LINE L1 691 2228 -3658 1 997 36332 39 0 3 chr1 54012329 54017406 -143178026 + L1Md_T LINE L1 432 5589 -297 1 997 8646 30 1 0 chr1 54017406 54018401 -143177031 + L1Md_T LINE L1 5590 6585 0 1 997 8983 125 34 39 chr1 54018401 54018665 -143176767 + L1_Mur1 LINE L1 2209 2473 -3407 1 997 907 72 0 0 chr1 54018665 54018790 -143176642 - B1_Mus2 SINE Alu 0 147 23 1 997 8983 125 34 39 chr1 54018790 54020290 -143175142 + L1_Mur1 LINE L1 2474 3984 -1896 1 997 1413 186 29 0 chr1 54020290 54020570 -143174862 + Lx3C LINE L1 6678 6965 -11 1 997 320 0 0 24 chr1 54020571 54020612 -143174820 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1 997 342 250 141 14 chr1 54020612 54020754 -143174678 + L1MA7 LINE L1 5773 5932 -359 1 997 9067 90 18 20 chr1 54021033 54022347 -143173085 + Lx3A LINE L1 5658 6968 -13 2 997 303 28 0 0 chr1 54022347 54022383 -143173049 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 997 1087 201 224 54 chr1 54024050 54024416 -143171016 + RLTR20C LTR ERVK 1 442 -92 2 997 423 0 0 0 chr1 54024416 54024463 -143170969 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 997 1087 201 224 54 chr1 54024463 54024543 -143170889 + RLTR20C LTR ERVK 443 522 -12 2 997 6945 151 85 8 chr1 54024734 54026875 -143168557 + Lx5 LINE L1 4716 7010 -40 2 997 588 194 155 27 chr1 54026893 54027041 -143168391 + B3 SINE B2 50 216 0 2 997 243 0 0 0 chr1 54027048 54027075 -143168357 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 997 2038 100 32 0 chr1 54027602 54027911 -143167521 + ORR1A2 LTR MaLR 1 319 -8 2 997 400 337 85 26 chr1 54028000 54028390 -143167042 + L2a LINE L2 2971 3383 -43 2 997 311 188 0 0 chr1 54028541 54028605 -143166827 - RMER15 LTR ERVL -109 466 403 2 997 242 320 26 0 chr1 54028907 54028985 -143166447 - ID4 SINE ID -2 81 2 3 997 242 264 132 62 chr1 54029176 54029305 -143166127 - ID_B1 SINE B4 -3 221 84 3 997 1744 314 76 8 chr1 54029651 54030876 -143164556 + L1M2 LINE L1 4535 5875 -5 3 997 520 156 18 0 chr1 54030911 54031020 -143164412 + GA-rich Low_complexity Low_complexity 1 111 0 3 997 517 287 60 22 chr1 54031109 54031294 -143164138 + ORR1E LTR MaLR 1 192 -167 3 997 405 0 0 0 chr1 54031314 54031359 -143164073 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 997 2533 133 39 15 chr1 54031505 54031916 -143163516 - MTC LTR MaLR 0 421 1 3 997 474 18 0 0 chr1 54031955 54032010 -143163422 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 997 378 0 0 0 chr1 54033424 54033466 -143161966 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 997 601 262 107 21 chr1 54033489 54033676 -143161756 - B4 SINE B4 0 292 90 3 997 662 235 45 0 chr1 54033673 54033852 -143161580 - B4A SINE B4 -105 187 1 4 997 260 27 0 26 chr1 54034156 54034194 -143161238 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 4 997 735 272 40 0 chr1 54034217 54034419 -143161013 + ID_B1 SINE B4 2 211 -13 4 997 351 0 0 0 chr1 54035554 54035593 -143159839 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 997 1638 196 195 32 chr1 54035872 54036416 -143159016 - Lx9 LINE L1 -1354 6290 5556 4 997 4031 216 110 45 chr1 54036472 54037529 -143157903 + Lx9 LINE L1 6354 7478 -166 4 997 261 0 0 0 chr1 54037529 54037558 -143157874 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 997 273 29 0 0 chr1 54037560 54037594 -143157838 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 997 252 212 131 0 chr1 54037619 54037718 -143157714 - RMER17A LTR ERVK -289 462 351 4 997 1320 125 0 5 chr1 54037823 54038016 -143157416 - B2_Mm2 SINE B2 -3 192 1 4 997 186 184 0 0 chr1 54038443 54038481 -143156951 - L2a LINE L2 -12 3414 3377 5 997 292 265 71 0 chr1 54038509 54038607 -143156825 + PB1D10 SINE Alu 13 117 0 5 997 2053 80 7 0 chr1 54039293 54039569 -143155863 + L1_Mus3 LINE L1 6360 6637 -1 5 997 270 227 11 33 chr1 54040201 54040292 -143155140 + G-rich Low_complexity Low_complexity 4 92 0 5 997 682 271 6 12 chr1 54041221 54041393 -143154039 - Lx8 LINE L1 -322 7151 6981 5 997 774 175 11 6 chr1 54041393 54041571 -143153861 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 997 333 259 44 11 chr1 54041577 54041667 -143153765 - Lx8 LINE L1 -512 6961 6869 5 997 1797 71 0 4 chr1 54041730 54041970 -143153462 - L1_Mus4 LINE L1 -6 6630 6392 5 997 201 349 15 0 chr1 54043032 54043098 -143152334 + MIRc SINE MIR 92 158 -110 5 997 404 314 76 25 chr1 54044164 54044321 -143151111 + RSINE1 SINE B4 1 165 0 5 997 21 0 0 0 chr1 54044346 54044367 -143151065 + AT_rich Low_complexity Low_complexity 1 21 0 5 997 256 315 59 66 chr1 54044819 54044955 -143150477 + L1ME3A LINE L1 5952 6086 -87 6 997 1357 30 54 0 chr1 54044972 54045123 -143150309 + B2_Mm1a SINE B2 2 160 -33 6 997 342 0 0 0 chr1 54045123 54045161 -143150271 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 997 1357 30 54 0 chr1 54045161 54045176 -143150256 + B2_Mm1a SINE B2 161 176 -17 6 997 234 288 53 86 chr1 54045447 54045599 -143149833 + RLTR12B LTR ERVK 161 307 -221 6 997 1212 48 0 7 chr1 54045715 54045862 -143149570 + B1_Mus2 SINE Alu 2 147 0 6 997 36 40 0 0 chr1 54045945 54045995 -143149437 + AT_rich Low_complexity Low_complexity 1 50 0 6 997 345 315 161 28 chr1 54046033 54046350 -143149082 - L1M4 LINE L1 -5724 818 460 6 997 882 230 174 22 chr1 54046356 54046667 -143148765 + ORR1D2 LTR MaLR 1 358 -12 6 997 414 211 2 5 chr1 54046681 54046772 -143148660 + B3A SINE B2 1 89 -106 6 997 406 229 31 0 chr1 54047078 54047174 -143148258 - L1M4 LINE L1 -6398 144 46 6 997 1459 108 4 18 chr1 54047181 54047407 -143148025 - Lx2 LINE L1 0 6997 6775 6 997 8503 115 38 15 chr1 54047407 54048718 -143146714 - Lx2 LINE L1 -354 6643 5300 6 997 4905 47 48 5 chr1 54048718 54049359 -143146073 - L1_Mus1 LINE L1 0 6567 5922 7 997 8503 147 19 37 chr1 54049359 54050298 -143145134 - Lx2 LINE L1 -584 5299 4385 6 997 1473 121 5 14 chr1 54050295 54050513 -143144919 - L1VL4 LINE L1 -5899 403 188 7 997 1243 34 0 0 chr1 54050532 54050678 -143144754 + B1_Mus2 SINE Alu 2 147 0 7 997 216 0 0 0 chr1 54050678 54050702 -143144730 + (A)n Simple_repeat Simple_repeat 1 24 0 7 997 1316 219 89 21 chr1 54050750 54051086 -143144346 + ORR1E LTR MaLR 1 359 0 7 997 1987 153 93 8 chr1 54051344 54051732 -143143700 - MTC LTR MaLR 0 421 1 7 997 260 173 19 0 chr1 54051760 54051812 -143143620 + MTE2b LTR MaLR 327 379 0 7 997 326 111 37 0 chr1 54053677 54053731 -143141701 - ORR1A4 LTR MaLR 0 329 274 7 997 306 0 0 0 chr1 54053733 54053767 -143141665 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 7 997 1021 103 45 0 chr1 54053767 54053923 -143141509 - B2_Mm2 SINE B2 -32 163 1 7 997 1606 167 67 78 chr1 54053925 54054282 -143141150 - ORR1B1 LTR MaLR -41 353 1 8 997 2212 141 15 54 chr1 54055426 54055815 -143139617 - ORR1C1 LTR MaLR 0 378 5 8 997 254 276 91 11 chr1 54055920 54056008 -143139424 + LTR33 LTR ERVL 8 102 -413 8 997 486 0 0 0 chr1 54056044 54056098 -143139334 + (GA)n Simple_repeat Simple_repeat 2 55 0 8 997 360 0 0 0 chr1 54056251 54056291 -143139141 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 997 511 312 124 21 chr1 54057201 54057532 -143137900 - MLT1A0 LTR MaLR 0 365 1 8 997 513 196 20 27 chr1 54057566 54057713 -143137719 + L1M LINE L1 5259 5404 -779 8 997 330 280 7 96 chr1 54057778 54057924 -143137508 - ID_B1 SINE B4 0 224 92 8 997 284 245 91 10 chr1 54057932 54058031 -143137401 + L1M LINE L1 5468 5574 -600 8 997 1336 174 33 72 chr1 54058201 54058536 -143136896 + RLTRETN_Mm LTR ERVK 1 322 0 8 997 423 292 69 0 chr1 54058823 54058953 -143136479 + B1F SINE Alu 1 139 -10 8 997 271 250 41 14 chr1 54060935 54061008 -143134424 + L1MC LINE L1 5569 5643 -2239 9 997 412 331 59 107 chr1 54061403 54061827 -143133605 - Tigger7 DNA MER2_type -2077 414 1 9 997 292 279 33 0 chr1 54062012 54062119 -143133313 + PB1D10 SINE Alu 1 124 -3 9 997 266 235 0 0 chr1 54062420 54062471 -143132961 + B4A SINE B4 3 53 -239 9 997 299 288 12 0 chr1 54062604 54062684 -143132748 + ID4_ SINE ID 1 81 -2 9 997 1114 69 7 0 chr1 54063784 54063928 -143131504 - B1_Mus2 SINE Alu 0 147 3 9 997 198 0 0 0 chr1 54064561 54064583 -143130849 + (T)n Simple_repeat Simple_repeat 1 22 0 9 997 1256 20 0 20 chr1 54064583 54064733 -143130699 - B1_Mm SINE Alu 0 147 1 9 997 6213 72 7 6 chr1 54064887 54065709 -143129723 + L1Md_F2 LINE L1 5761 6582 0 9 997 1048 162 102 5 chr1 54065723 54065928 -143129504 + URR1A DNA MER1_type 1 225 -1 9 997 837 200 53 16 chr1 54067480 54067665 -143127767 + B4A SINE B4 37 228 -64 1 997 483 243 87 60 chr1 54067665 54067712 -143127720 + RSINE1 SINE B4 2 46 -119 1 997 3927 165 131 27 chr1 54067712 54068534 -143126898 + RMER13B LTR ERVK 1 908 0 1 997 483 243 87 60 chr1 54068534 54068635 -143126797 + RSINE1 SINE B4 47 154 -11 1 997 279 54 0 0 chr1 54068642 54068679 -143126753 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 997 654 87 0 0 chr1 54068679 54068781 -143126651 + (GA)n Simple_repeat Simple_repeat 2 104 0 1 997 528 277 48 10 chr1 54069751 54069959 -143125473 - B3 SINE B2 0 216 1 1 997 514 322 78 58 chr1 54070059 54070352 -143125080 - MLT1B LTR MaLR -25 365 67 1 997 27 29 0 0 chr1 54072090 54072124 -143123308 + AT_rich Low_complexity Low_complexity 1 34 0 1 997 399 73 0 0 chr1 54072962 54073017 -143122415 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 997 546 311 159 9 chr1 54073319 54073546 -143121886 + B4A SINE B4 29 289 -3 1 997 243 0 0 0 chr1 54073560 54073587 -143121845 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 997 297 0 0 0 chr1 54073587 54073619 -143121813 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 997 24 67 0 0 chr1 54073792 54073837 -143121595 + AT_rich Low_complexity Low_complexity 1 45 0 1 997 495 0 0 0 chr1 54075068 54075123 -143120309 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 997 274 276 0 0 chr1 54075496 54075554 -143119878 + (CCA)n Simple_repeat Simple_repeat 2 59 0 1 997 510 17 0 0 chr1 54075554 54075613 -143119819 + (TCC)n Simple_repeat Simple_repeat 1 59 0 1 997 1251 209 124 24 chr1 54075995 54076333 -143119099 - ORR1D1 LTR MaLR -2 372 1 1 997 262 350 37 43 chr1 54076667 54076831 -143118601 + MLT1I LTR MaLR 249 411 0 1 997 207 0 0 0 chr1 54076861 54076884 -143118548 + (T)n Simple_repeat Simple_repeat 1 23 0 1 997 769 233 0 0 chr1 54077174 54077320 -143118112 - B1_Mur1 SINE Alu 0 149 4 1 997 1296 103 54 0 chr1 54077798 54077983 -143117449 - B2_Mm2 SINE B2 0 195 1 1 997 349 211 111 0 chr1 54078094 54078184 -143117248 - L1M LINE L1 -872 5428 5329 1 997 1129 211 236 7 chr1 54078465 54078537 -143116895 + RMER4B LTR ERVK 67 149 -436 1 997 324 0 0 0 chr1 54078537 54078573 -143116859 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 997 1129 211 236 7 chr1 54078573 54078915 -143116517 + RMER4B LTR ERVK 150 575 -10 1 997 364 255 10 21 chr1 54079382 54079478 -143115954 + MTEa LTR MaLR 264 358 -21 1 997 351 270 8 17 chr1 54080263 54080380 -143115052 + PB1 SINE Alu 9 124 -3 1 997 642 294 106 0 chr1 54080752 54080970 -143114462 - B4A SINE B4 -8 284 44 1 997 966 211 29 19 chr1 54081366 54081574 -143113858 + B3 SINE B2 1 210 -6 1 997 677 187 33 20 chr1 54081592 54081745 -143113687 + Lx9 LINE L1 4591 4745 -1102 1 997 2728 73 2 32 chr1 54081746 54082088 -143113344 + MTB LTR MaLR 1 335 -65 1 997 705 229 107 129 chr1 54082088 54082490 -143112942 + RLTR9C LTR ERVK 1 393 0 1 997 2728 73 2 32 chr1 54082490 54082559 -143112873 + MTB LTR MaLR 336 400 0 1 997 2167 180 77 16 chr1 54082559 54083066 -143112366 + Lx9 LINE L1 4742 5279 -568 1 997 36133 36 0 0 chr1 54083048 54088263 -143107169 + L1Md_T LINE L1 278 5589 -297 1 997 9174 5 0 0 chr1 54088263 54089259 -143106173 + L1Md_T LINE L1 5590 6585 0 1 997 11483 250 55 74 chr1 54089259 54090414 -143105018 + Lx9 LINE L1 5295 6423 -1221 1 997 2197 183 69 12 chr1 54090439 54090859 -143104573 - Lx5 LINE L1 0 7050 6607 1 997 4994 193 36 12 chr1 54091121 54092098 -143103334 + Lx9 LINE L1 6430 7429 -215 1 997 2046 184 91 17 chr1 54092098 54092544 -143102888 + RLTR20B3 LTR ERVK 1 471 -106 1 997 240 35 0 0 chr1 54092544 54092573 -143102859 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 997 2046 184 91 17 chr1 54092573 54092600 -143102832 + RLTR20B3 LTR ERVK 472 508 -69 1 997 616 178 195 0 chr1 54092630 54092815 -143102617 + Lx9 LINE L1 7423 7643 -1 1 997 1678 45 0 0 chr1 54093278 54093570 -143101862 - L1Md_F3 LINE L1 0 6584 6362 1 997 4321 55 0 0 chr1 54093570 54094099 -143101333 + Lx4A LINE L1 5112 5640 -1418 1 997 483 239 29 43 chr1 54094374 54094514 -143100918 + ID_B1 SINE B4 78 215 -9 1 997 324 120 0 0 chr1 54094526 54094576 -143100856 + (CATG)n Simple_repeat Simple_repeat 3 52 0 1 997 186 43 0 0 chr1 54094757 54094780 -143100652 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 997 729 147 124 0 chr1 54094794 54094923 -143100509 + B1_Mur4 SINE Alu 1 145 -5 1 997 351 150 0 0 chr1 54094923 54094983 -143100449 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 1 997 307 305 153 11 chr1 54094983 54095159 -143100273 + L1M4b LINE L1 1889 2089 -5245 1 997 22 0 0 0 chr1 54095471 54095493 -143099939 + AT_rich Low_complexity Low_complexity 1 22 0 1 997 34 42 0 0 chr1 54095561 54095609 -143099823 + AT_rich Low_complexity Low_complexity 1 48 0 1 997 248 200 91 0 chr1 54096100 54096155 -143099277 - MER20 DNA MER1_type -145 74 15 1 997 1251 28 7 0 chr1 54096356 54096501 -143098931 + B1_Mus1 SINE Alu 2 147 -1 1 997 1630 21 0 16 chr1 54098604 54098796 -143096636 + B2_Mm1a SINE B2 2 190 -3 1 997 1201 241 64 49 chr1 54098950 54099295 -143096137 - MTD LTR MaLR -15 404 55 1 997 1960 144 101 3 chr1 54099301 54099677 -143095755 + MTC LTR MaLR 7 419 -2 1 997 1786 152 32 94 chr1 54100461 54100643 -143094789 - RMER17C LTR ERVK 0 410 220 1 997 1098 96 0 0 chr1 54100643 54100800 -143094632 + (GAA)n Simple_repeat Simple_repeat 3 159 0 1 997 1786 152 32 94 chr1 54100800 54100856 -143094576 - RMER17C LTR ERVK -191 219 182 1 997 345 24 0 0 chr1 54100856 54100898 -143094534 + (GAGAA)n Simple_repeat Simple_repeat 2 43 0 1 997 1786 152 32 94 chr1 54100898 54101095 -143094337 - RMER17C LTR ERVK -229 181 2 1 997 207 0 0 0 chr1 54102702 54102725 -143092707 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 997 381 255 165 15 chr1 54104223 54104490 -143090942 - MER33 DNA MER1_type -2 322 16 1 997 513 275 7 0 chr1 54105262 54105400 -143090032 - ID_B1 SINE B4 0 224 86 1 997 311 312 39 16 chr1 54105458 54105613 -143089819 + PB1D10 SINE Alu 5 168 -146 1 997 410 246 10 9 chr1 54105613 54105725 -143089707 + Lx9 LINE L1 6933 7153 -491 1 997 23 54 0 0 chr1 54105730 54105767 -143089665 + AT_rich Low_complexity Low_complexity 1 37 0 1 997 21 0 0 0 chr1 54106943 54106964 -143088468 + AT_rich Low_complexity Low_complexity 1 21 0 1 997 285 323 21 0 chr1 54107076 54107172 -143088260 + L2 LINE L2 2769 2866 -553 1 997 449 296 78 13 chr1 54107346 54107500 -143087932 + B4A SINE B4 58 221 -71 1 997 288 253 61 31 chr1 54108070 54108168 -143087264 + PB1D10 SINE Alu 17 117 0 1 997 782 73 9 0 chr1 54108197 54108307 -143087125 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 1 997 211 214 14 14 chr1 54108335 54108406 -143087026 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1 997 1266 27 0 0 chr1 54108463 54108610 -143086822 + B1_Mus2 SINE Alu 1 147 0 1 997 234 0 0 0 chr1 54108619 54108645 -143086787 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 997 1790 132 115 88 chr1 54108651 54108955 -143086477 + ORR1C2 LTR MaLR 1 339 -45 1 997 1122 44 30 0 chr1 54108955 54109090 -143086342 + B1_Mus1 SINE Alu 1 139 -9 1 997 1790 132 115 88 chr1 54109090 54109101 -143086331 + ORR1C2 LTR MaLR 340 340 -44 1 997 204 67 0 0 chr1 54109101 54109131 -143086301 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 997 1790 132 115 88 chr1 54109131 54109188 -143086244 + ORR1C2 LTR MaLR 340 384 0 1 997 4677 226 62 40 chr1 54109188 54110528 -143084904 + ORR1C2-int LTR MaLR 1 1370 0 1 997 780 120 8 0 chr1 54110533 54110658 -143084774 + ORR1C2 LTR MaLR 6 131 -253 1 997 486 163 30 20 chr1 54110657 54110757 -143084675 + ORR1C2 LTR MaLR 284 384 0 1 997 2537 252 188 6 chr1 54112444 54113294 -143082138 + Lx8 LINE L1 6211 7215 -258 1 997 255 242 0 31 chr1 54113658 54113722 -143081710 + MIR SINE MIR 136 197 -65 1 997 357 301 79 9 chr1 54114256 54114292 -143081140 - B4A SINE B4 -85 207 86 1 997 403 218 51 0 chr1 54114292 54114370 -143081062 - B1F2 SINE Alu -67 82 1 1 997 218 211 0 0 chr1 54114703 54114741 -143080691 - PB1 SINE Alu -67 60 23 1 997 21 36 0 0 chr1 54114910 54114938 -143080494 + AT_rich Low_complexity Low_complexity 1 28 0 1 997 1205 120 109 5 chr1 54115299 54115500 -143079932 - URR1A DNA MER1_type -3 223 2 1 997 271 192 14 14 chr1 54116627 54116701 -143078731 + GA-rich Low_complexity Low_complexity 5 78 0 1 997 248 200 14 0 chr1 54117268 54117338 -143078094 + CT-rich Low_complexity Low_complexity 2 72 0 1 997 1240 178 194 161 chr1 54119848 54120364 -143075068 + MT2A LTR ERVL 1 533 0 1 997 23 0 0 0 chr1 54120430 54120453 -143074979 + AT_rich Low_complexity Low_complexity 1 23 0 1 997 452 284 0 0 chr1 54120534 54120636 -143074796 + PB1D7 SINE Alu 19 120 0 1 997 537 88 0 0 chr1 54120684 54120764 -143074668 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 997 478 288 52 7 chr1 54120893 54121047 -143074385 - Lx8 LINE L1 -906 6567 6407 1 997 1505 309 98 15 chr1 54121123 54121800 -143073632 + Lx8 LINE L1 6577 7309 -164 1 997 316 295 144 24 chr1 54122000 54122099 -143073333 + ID_B1 SINE B4 59 172 -52 1 997 1073 110 0 0 chr1 54122099 54122244 -143073188 + B1_Mus1 SINE Alu 4 148 0 1 997 316 295 144 24 chr1 54122244 54122269 -143073163 + ID_B1 SINE B4 173 197 -27 1 997 189 0 0 0 chr1 54123114 54123135 -143072297 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 997 660 274 86 29 chr1 54123150 54123394 -143072038 + B4A SINE B4 35 292 0 1 997 223 174 0 0 chr1 54123415 54123461 -143071971 + T-rich Low_complexity Low_complexity 1 46 0 1 997 218 323 30 0 chr1 54123508 54123607 -143071825 + GA-rich Low_complexity Low_complexity 5 106 0 1 997 402 311 86 70 chr1 54123661 54123962 -143071470 - MLT1K LTR MaLR -169 426 121 1 997 743 281 109 25 chr1 54124034 54124392 -143071040 + Lx9 LINE L1 7075 7462 -182 1 997 432 0 0 0 chr1 54124410 54124458 -143070974 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 997 26 30 0 0 chr1 54124559 54124592 -143070840 + AT_rich Low_complexity Low_complexity 1 33 0 1 997 651 94 0 0 chr1 54124636 54124732 -143070700 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 997 22 35 0 0 chr1 54124907 54124936 -143070496 + AT_rich Low_complexity Low_complexity 1 29 0 1 997 224 140 39 39 chr1 54125537 54125589 -143069843 + C-rich Low_complexity Low_complexity 1 52 0 1 997 225 0 0 0 chr1 54125910 54125935 -143069497 + (T)n Simple_repeat Simple_repeat 1 25 0 1 997 440 242 15 45 chr1 54127187 54127321 -143068111 + RMER15 LTR ERVL 345 474 -101 2 997 12120 150 104 72 chr1 54127321 54127785 -143067647 + L1_Mur3 LINE L1 1571 2058 -3822 2 997 375 41 0 0 chr1 54127785 54127834 -143067598 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 997 12120 150 104 72 chr1 54127834 54128691 -143066741 + L1_Mur3 LINE L1 2059 2919 -2958 2 997 544 182 35 43 chr1 54128691 54128806 -143066626 + B1_Mus1 SINE Alu 29 142 -6 2 997 246 32 0 0 chr1 54128809 54128840 -143066592 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 997 12120 150 104 72 chr1 54128840 54130384 -143065048 + L1_Mur3 LINE L1 2923 4620 -1260 2 997 773 30 0 10 chr1 54130384 54130485 -143064947 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 2 997 12120 150 104 72 chr1 54130485 54130629 -143064803 + L1_Mur3 LINE L1 4621 4796 -1084 2 997 2264 205 98 47 chr1 54130640 54131264 -143064168 + Lx6 LINE L1 6795 7450 -10 2 997 534 160 11 11 chr1 54131559 54131654 -143063778 + MT2A LTR ERVL 8 102 -431 2 997 395 318 0 0 chr1 54132125 54132232 -143063200 - PB1D10 SINE Alu -6 111 5 2 124 1267 206 91 99 chr1 54132530 54132945 -143062487 + MT2A LTR ERVL 6 548 -53 2 998 447 106 0 0 chr1 54132945 54133011 -143062421 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 998 387 0 0 0 chr1 54133011 54133053 -143062379 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 998 871 249 69 72 chr1 54133053 54133096 -143062336 + MT2A LTR ERVL 549 596 -5 2 998 243 0 0 0 chr1 54133657 54133684 -143061748 + (T)n Simple_repeat Simple_repeat 1 27 0 2 998 180 0 0 0 chr1 54133758 54133778 -143061654 + (T)n Simple_repeat Simple_repeat 1 20 0 2 998 241 231 137 76 chr1 54134040 54134171 -143061261 - MamRep605 Unknown Unknown -52 824 686 2 998 320 311 62 0 chr1 54135260 54135372 -143060060 + B1F SINE Alu 1 117 0 2 998 25 0 0 0 chr1 54135375 54135400 -143060032 + AT_rich Low_complexity Low_complexity 1 25 0 2 998 489 344 8 0 chr1 54135403 54135534 -143059898 + ID_B1 SINE B4 5 136 -88 2 998 301 322 45 77 chr1 54136541 54136696 -143058736 + MIR3 SINE MIR 42 191 -17 2 998 1774 102 0 0 chr1 54137622 54137876 -143057556 - L1_Mus3 LINE L1 -183 5700 5447 2 998 4188 108 33 49 chr1 54137878 54138754 -143056678 + L1_Mus3 LINE L1 5678 6610 -28 2 998 501 32 0 0 chr1 54138762 54138825 -143056607 + (TAA)n Simple_repeat Simple_repeat 3 65 0 2 998 380 346 91 14 chr1 54138950 54139170 -143056262 - MIR SINE MIR -19 243 7 2 998 397 240 31 20 chr1 54139289 54139387 -143056045 - MTE2b LTR MaLR -280 99 1 2 998 909 247 47 71 chr1 54139787 54140195 -143055237 + MLT2B3 LTR ERVL 69 519 -1 2 998 1485 255 124 159 chr1 54140556 54141056 -143054376 - RLTR22_Mus LTR ERVK -303 1505 959 2 998 273 57 0 0 chr1 54141056 54141091 -143054341 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 998 1485 255 124 159 chr1 54141091 54141575 -143053857 - RLTR22_Mus LTR ERVK -850 958 546 2 998 1172 68 0 0 chr1 54141575 54141721 -143053711 + B1_Mus1 SINE Alu 1 146 -2 2 998 1485 255 122 155 chr1 54141721 54142277 -143053155 - RLTR22_Mus LTR ERVK -1263 545 19 2 998 288 229 22 98 chr1 54142727 54142819 -143052613 + MT2B LTR ERVL 156 240 -361 2 998 405 253 36 12 chr1 54142743 54142827 -143052605 + B1F2 SINE Alu 8 93 -56 2 998 373 284 17 76 chr1 54142937 54143048 -143052384 - MLT1B LTR MaLR -65 325 221 2 998 449 110 0 12 chr1 54143048 54143131 -143052301 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 998 373 299 50 1396 chr1 54143131 54143266 -143052166 - MLT1B LTR MaLR -170 220 30 2 998 545 98 0 0 chr1 54143266 54143348 -143052084 - MYSERV16_I-int LTR ERVK -159 2167 2086 2 998 1351 28 10 15 chr1 54143473 54143888 -143051544 + (TAGA)n Simple_repeat Simple_repeat 1 412 0 2 998 219 371 26 8 chr1 54144869 54144986 -143050446 + MIR SINE MIR 12 130 -132 2 998 1057 55 21 0 chr1 54144991 54145136 -143050296 - L1_Mus1 LINE L1 0 6567 6420 2 998 1519 33 0 0 chr1 54145136 54145319 -143050113 + L1Md_F2 LINE L1 5404 5586 -297 2 998 7890 51 8 5 chr1 54145319 54146312 -143049120 + L1Md_F2 LINE L1 5587 6582 0 2 998 2502 47 0 0 chr1 54146312 54146632 -143048800 - L1_Mus1 LINE L1 -136 6431 6112 2 998 195 336 121 43 chr1 54146634 54146774 -143048658 + MIRb SINE MIR 104 254 -14 2 998 263 247 51 13 chr1 54147506 54147584 -143047848 + MTEa LTR MaLR 290 370 -9 2 998 181 333 12 0 chr1 54148193 54148274 -143047158 + MER5B DNA MER1_type 78 159 -19 2 998 942 269 83 18 chr1 54148394 54148720 -143046712 + ORR1E LTR MaLR 11 357 -2 2 998 459 283 109 41 chr1 54149536 54149757 -143045675 + MTEb LTR MaLR 115 350 -29 2 998 518 309 237 25 chr1 54150268 54150593 -143044839 - MLT1A1 LTR MaLR -14 394 1 2 998 1412 163 143 0 chr1 54150730 54151073 -143044359 + Lx9 LINE L1 7250 7641 -3 2 998 324 367 16 55 chr1 54151154 54151185 -143044247 + ID SINE ID 11 41 -183 2 998 3452 23 5 0 chr1 54151185 54151579 -143043853 + MTA_Mm LTR MaLR 1 396 0 2 998 324 318 87 87 chr1 54151579 54151688 -143043744 + ID_B1 SINE B4 39 151 -141 2 998 212 178 22 0 chr1 54152757 54152802 -143042630 - B4 SINE B4 -245 47 2 2 998 413 267 23 101 chr1 54153261 54153372 -143042060 + B1F1 SINE Alu 1 101 -48 2 998 1331 148 32 9 chr1 54153372 54153590 -143041842 - MTC LTR MaLR 0 421 199 2 998 333 118 0 0 chr1 54153593 54153644 -143041788 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2 998 368 158 26 0 chr1 54153660 54153736 -143041696 - L1_Mus2 LINE L1 -9 6557 6480 2 998 1010 205 41 5 chr1 54153736 54153932 -143041500 - MTC LTR MaLR -218 203 1 2 998 226 250 0 0 chr1 54153932 54153978 -143041454 + PB1D10 SINE Alu 71 116 -1 2 998 2018 211 71 33 chr1 54154277 54154952 -143040480 + Lx9 LINE L1 3799 4499 -1348 2 998 3797 224 37 87 chr1 54155296 54155354 -143040078 + Lx9 LINE L1 4521 4576 -1271 2 998 477 0 0 0 chr1 54155354 54155407 -143040025 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 998 3797 224 37 87 chr1 54155407 54155743 -143039689 + Lx9 LINE L1 4577 4899 -948 2 998 1155 11 40 11 chr1 54155743 54155918 -143039514 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 998 3797 224 37 87 chr1 54155918 54155929 -143039503 + Lx9 LINE L1 4900 4900 -947 2 998 1023 17 16 78 chr1 54155929 54156121 -143039311 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 998 3797 224 37 87 chr1 54156121 54156628 -143038804 + Lx9 LINE L1 4900 5409 -438 2 998 1150 142 60 94 chr1 54156628 54156861 -143038571 - URR1B DNA MER1_type 0 225 1 2 998 3797 235 34 79 chr1 54156861 54157412 -143038020 + Lx9 LINE L1 5410 5948 -1696 2 998 283 32 61 45 chr1 54157589 54157655 -143037777 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 2 998 495 261 43 17 chr1 54157752 54157869 -143037563 - PB1D7 SINE Alu 0 120 1 2 998 524 296 21 7 chr1 54158751 54158894 -143036538 + B4A SINE B4 84 228 -64 2 998 603 262 128 0 chr1 54158897 54159038 -143036394 + RSINE1 SINE B4 7 165 0 2 998 24 0 0 0 chr1 54159038 54159062 -143036370 + AT_rich Low_complexity Low_complexity 1 24 0 2 998 378 0 0 0 chr1 54159110 54159152 -143036280 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 998 1839 110 27 0 chr1 54160038 54160337 -143035095 - L1_Mus3 LINE L1 -42 6596 6290 2 998 21 36 0 0 chr1 54160826 54160854 -143034578 + AT_rich Low_complexity Low_complexity 1 28 0 2 998 1285 117 15 73 chr1 54161640 54161899 -143033533 + RMER17C LTR ERVK 167 410 0 2 998 801 158 50 7 chr1 54162523 54162663 -143032769 - B1_Mur2 SINE Alu 0 149 4 2 998 207 244 0 0 chr1 54162795 54162836 -143032596 + G-rich Low_complexity Low_complexity 1 41 0 2 998 195 329 106 0 chr1 54163025 54163110 -143032322 + MIRb SINE MIR 147 240 -28 2 998 341 290 11 11 chr1 54163982 54164076 -143031356 - Lx9 LINE L1 -1144 6500 6407 2 998 189 273 23 0 chr1 54164247 54164291 -143031141 - L2c LINE L2 -76 3311 3267 2 998 209 273 61 61 chr1 54164677 54164759 -143030673 + L2b LINE L2 3294 3375 0 2 998 323 175 98 24 chr1 54164793 54164957 -143030475 + RMER17D LTR ERVK 217 392 -497 2 998 423 0 0 0 chr1 54165120 54165167 -143030265 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 998 855 134 0 0 chr1 54165485 54165627 -143029805 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 2 998 589 245 7 0 chr1 54165628 54165767 -143029665 - B1_Mur1 SINE Alu -8 141 2 2 998 29 47 0 0 chr1 54165797 54165840 -143029592 + AT_rich Low_complexity Low_complexity 1 43 0 2 998 676 259 58 0 chr1 54166660 54166849 -143028583 + RCHARR1 DNA MER1_type 270 469 -505 2 998 296 253 11 0 chr1 54166839 54166930 -143028502 + RCHARR1 DNA MER1_type 740 831 -143 2 998 522 331 27 0 chr1 54166935 54167083 -143028349 + RSINE1 SINE B4 2 153 -12 2 998 392 277 8 51 chr1 54167516 54167634 -143027798 + PB1D10 SINE Alu 1 113 -4 2 998 212 350 58 0 chr1 54168536 54168639 -143026793 + PB1D10 SINE Alu 1 109 -8 2 998 197 33 33 0 chr1 54169378 54169408 -143026024 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 998 409 263 21 0 chr1 54169697 54169792 -143025640 - Zaphod DNA Tip100 -1 4030 3934 2 998 3752 65 13 11 chr1 54170532 54171002 -143024430 + L1_Mus1 LINE L1 6097 6567 0 2 998 311 18 35 35 chr1 54171112 54171170 -143024262 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 2 998 1234 37 0 0 chr1 54171170 54171306 -143024126 - B1_Mm SINE Alu -11 136 1 2 998 298 250 58 14 chr1 54171483 54171552 -143023880 + RSINE1 SINE B4 84 155 -10 2 998 498 265 0 0 chr1 54171549 54171651 -143023781 - B3A SINE B2 -96 102 1 2 998 314 289 150 34 chr1 54171971 54172118 -143023314 + RSINE1 SINE B4 1 164 -1 2 998 671 179 6 0 chr1 54172585 54172764 -143022668 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 998 225 207 0 49 chr1 54172871 54172932 -143022500 - MER113 DNA MER1_type -133 388 331 2 998 229 287 119 25 chr1 54173045 54173163 -143022269 + L1M5 LINE L1 3696 3824 -2322 2 998 418 145 0 0 chr1 54173204 54173273 -143022159 + MTD LTR MaLR 343 411 -8 2 998 2858 200 29 18 chr1 54173405 54173955 -143021477 - Lx5 LINE L1 0 7050 6495 2 998 4829 152 72 11 chr1 54173975 54174817 -143020615 + Lx5 LINE L1 5598 6491 -559 2 998 618 261 51 66 chr1 54177292 54177489 -143017943 + B3A SINE B2 4 197 -1 2 998 752 241 6 12 chr1 54177816 54177980 -143017452 - B3 SINE B2 -52 164 2 2 998 420 20 0 0 chr1 54178605 54178654 -143016778 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 998 668 294 91 85 chr1 54178705 54179433 -143015999 + Charlie10 DNA MER1_type 2091 2822 0 2 998 239 305 53 0 chr1 54179639 54179734 -143015698 - LTR82B Low_complexity ERVL -108 722 623 2 998 943 295 91 44 chr1 54179790 54180152 -143015280 + MTE2b LTR MaLR 1 379 0 2 998 231 275 0 14 chr1 54180395 54180465 -143014967 + MER113 DNA MER1_type 160 228 -293 3 998 290 180 17 9 chr1 54181118 54181186 -143014246 + BC1_Mm scRNA scRNA 5 74 -9 3 998 249 300 44 0 chr1 54181186 54181208 -143014224 + ID_B1 SINE B4 5 98 -126 3 998 1245 62 7 0 chr1 54182160 54182305 -143013127 + B1_Mus2 SINE Alu 2 147 0 3 998 180 97 0 0 chr1 54182305 54182336 -143013096 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 3 998 319 235 48 58 chr1 54182406 54182510 -143012922 - B1F SINE Alu 0 149 47 3 998 23 0 0 0 chr1 54182534 54182557 -143012875 + AT_rich Low_complexity Low_complexity 1 23 0 3 998 261 238 198 64 chr1 54182838 54182965 -143012467 + LTR82A LTR ERVL 580 732 -140 3 998 2192 141 0 21 chr1 54182965 54183298 -143012134 - ORR1A3 LTR MaLR 0 326 1 3 998 261 238 198 64 chr1 54183298 54183327 -143012105 + LTR82A LTR ERVL 733 757 -115 3 998 1260 161 71 0 chr1 54184452 54184663 -143010769 - URR1A DNA MER1_type 0 226 1 3 998 380 333 87 8 chr1 54185175 54185302 -143010130 + RSINE1 SINE B4 3 139 -26 3 998 237 108 0 0 chr1 54185308 54185345 -143010087 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 998 186 320 48 29 chr1 54186471 54186574 -143008858 + MIR SINE MIR 42 146 -116 3 998 22 0 0 0 chr1 54186937 54186959 -143008473 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 233 259 134 12 chr1 54187974 54188056 -143007376 + LTR82B Low_complexity ERVL 208 299 -531 3 998 438 283 78 131 chr1 54188072 54188263 -143007169 + ID_B1 SINE B4 23 203 -21 3 998 197 350 41 24 chr1 54188384 54188507 -143006925 + L2c LINE L2 3018 3142 -245 3 998 3277 44 39 3 chr1 54189113 54189499 -143005933 + MTB LTR MaLR 1 400 0 3 998 615 151 0 25 chr1 54191217 54191339 -143004093 + Lx LINE L1 6536 6654 0 3 998 348 43 0 0 chr1 54191347 54191393 -143004039 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 3 998 771 130 0 0 chr1 54192005 54192128 -143003304 + (GAA)n Simple_repeat Simple_repeat 2 124 0 3 998 1089 102 0 0 chr1 54192141 54192278 -143003154 + B1_Mus1 SINE Alu 1 137 -11 3 998 1867 128 80 13 chr1 54192356 54192656 -143002776 + Lx LINE L1 6322 6641 -13 3 998 3396 174 27 87 chr1 54194468 54195226 -143000206 + RMER19B LTR ERVK 1 664 -238 3 998 1434 161 30 17 chr1 54195239 54195522 -142999910 + RMER19B LTR ERVK 656 902 0 3 998 600 14 0 0 chr1 54195759 54195828 -142999604 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 998 350 281 49 49 chr1 54196203 54196345 -142999087 + B1F1 SINE Alu 7 148 -1 3 998 310 226 210 34 chr1 54196823 54196942 -142998490 + Tigger13a DNA MER2_type 124 263 -508 3 998 2317 153 53 13 chr1 54196977 54197354 -142998078 - ORR1B1 LTR MaLR 0 394 3 3 998 258 183 243 40 chr1 54197545 54197619 -142997813 + B4A SINE B4 135 223 -69 3 998 2273 279 61 44 chr1 54198199 54198334 -142997098 + Lx8 LINE L1 6080 6204 -1269 3 998 900 145 65 0 chr1 54198334 54198472 -142996960 + B1_Mus2 SINE Alu 1 147 0 3 998 2273 279 61 44 chr1 54198472 54199176 -142996256 + Lx8 LINE L1 6205 6933 -540 3 998 400 267 124 13 chr1 54199184 54199369 -142996063 + Lx8 LINE L1 7200 7414 -59 3 998 3311 259 46 17 chr1 54200890 54201781 -142993651 + Lx8 LINE L1 6357 7273 -200 3 998 657 47 0 0 chr1 54201826 54201911 -142993521 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3 998 449 259 106 87 chr1 54203047 54203208 -142992224 - RSINE1 SINE B4 -1 164 1 3 998 270 0 0 0 chr1 54203224 54203254 -142992178 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 3 998 260 240 53 13 chr1 54203632 54203708 -142991724 - MamRep605 Unknown Unknown -783 93 15 3 998 1162 220 178 37 chr1 54203905 54204231 -142991201 - MTEa LTR MaLR -2 377 6 3 998 428 275 9 44 chr1 54204753 54204867 -142990565 + PB1D10 SINE Alu 2 111 -6 3 998 257 312 119 91 chr1 54204867 54204929 -142990503 + B4 SINE B4 87 267 -25 3 998 597 285 0 0 chr1 54205465 54205595 -142989837 + ID_B1 SINE B4 80 209 -15 3 998 196 93 22 44 chr1 54206405 54206450 -142988982 + (TTAA)n Simple_repeat Simple_repeat 4 47 0 3 998 509 319 53 53 chr1 54206681 54207019 -142988413 - MLT1B LTR MaLR -52 338 1 3 998 1808 194 53 17 chr1 54207829 54208190 -142987242 - ORR1D1 LTR MaLR 0 374 1 3 998 1489 97 0 5 chr1 54208986 54209182 -142986250 - B2_Mm2 SINE B2 0 195 1 3 998 206 322 111 10 chr1 54210117 54210253 -142985179 - L2a LINE L2 -1 3425 3247 3 998 467 259 44 9 chr1 54210536 54210649 -142984783 - PB1D10 SINE Alu 0 117 1 3 998 426 304 88 0 chr1 54210860 54210985 -142984447 + ID_B1 SINE B4 77 212 -12 3 998 310 241 38 0 chr1 54210992 54211071 -142984361 + GA-rich Low_complexity Low_complexity 4 85 0 3 998 1242 68 0 0 chr1 54211559 54211706 -142983726 + B1_Mus1 SINE Alu 2 148 0 3 998 900 152 0 22 chr1 54211706 54211888 -142983544 + GA-rich Low_complexity Low_complexity 1 178 0 3 998 531 0 0 0 chr1 54211889 54211948 -142983484 + (GAAAA)n Simple_repeat Simple_repeat 5 63 0 3 998 970 276 95 9 chr1 54212240 54212576 -142982856 - MLT1A0 LTR MaLR 0 365 1 3 998 273 238 23 81 chr1 54212851 54212938 -142982494 - PB1D10 SINE Alu 0 117 36 3 998 459 237 38 6 chr1 54213405 54213545 -142981887 - L1MA9 LINE L1 -42 6249 6113 3 998 255 250 200 86 chr1 54213549 54213654 -142981778 + PB1D10 SINE Alu 1 117 0 3 998 373 310 0 65 chr1 54213697 54213821 -142981611 + PB1D10 SINE Alu 1 116 -1 3 998 227 87 0 42 chr1 54214010 54214058 -142981374 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 3 998 2308 228 69 59 chr1 54214640 54214712 -142980720 + Lx8 LINE L1 6549 6616 -857 3 998 2406 136 40 25 chr1 54214712 54215113 -142980319 - MTB_Mm LTR MaLR 0 407 1 3 998 2308 228 69 59 chr1 54215113 54215651 -142979781 + Lx8 LINE L1 6617 7165 -308 3 998 225 0 0 0 chr1 54215655 54215680 -142979752 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 998 226 272 146 26 chr1 54215680 54215831 -142979601 + Lx8 LINE L1 7303 7471 -2 3 998 310 140 0 0 chr1 54216191 54216241 -142979191 - Lx8 LINE L1 0 7473 7424 3 998 489 269 0 0 chr1 54216267 54216371 -142979061 - B1F2 SINE Alu -12 137 34 3 998 381 75 0 0 chr1 54216877 54216930 -142978502 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 998 531 244 24 8 chr1 54216942 54217066 -142978366 - RSINE1 SINE B4 -36 129 4 3 998 5022 174 84 9 chr1 54218330 54219287 -142976145 - RLTR25B LTR ERVK 0 1028 1 3 998 190 194 56 0 chr1 54219728 54219764 -142975668 + L3 LINE CR1 3325 3362 -1127 3 998 393 290 16 10 chr1 54219783 54219935 -142975497 - Lx8 LINE L1 -377 7267 6987 3 998 340 313 25 66 chr1 54219935 54220113 -142975319 + Lx9 LINE L1 7164 7441 -203 3 998 396 0 0 0 chr1 54220113 54220157 -142975275 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 998 303 327 108 58 chr1 54220157 54220281 -142975151 + Lx9 LINE L1 7322 7473 0 3 998 3292 64 13 3 chr1 54220286 54220678 -142974754 - MTA_Mm LTR MaLR 0 396 1 3 998 2161 111 9 44 chr1 54221424 54221532 -142973900 + ORR1A2 LTR MaLR 1 94 -233 3 998 2277 69 0 0 chr1 54221532 54221809 -142973623 + L1Md_F2 LINE L1 6306 6582 0 3 998 2161 111 9 44 chr1 54221809 54222039 -142973393 + ORR1A2 LTR MaLR 95 327 0 3 998 2331 190 39 43 chr1 54222230 54222302 -142973130 - Lx6 LINE L1 -776 6684 6611 3 998 2791 124 66 2 chr1 54222302 54222698 -142972734 + MTC LTR MaLR 1 421 0 3 998 2331 190 39 43 chr1 54222698 54223115 -142972317 - Lx6 LINE L1 -850 6610 6197 3 998 198 0 0 0 chr1 54224172 54224194 -142971238 + (T)n Simple_repeat Simple_repeat 1 22 0 3 998 462 17 0 0 chr1 54224196 54224254 -142971178 - B1_Mm SINE Alu -1 146 89 3 998 295 339 74 33 chr1 54224401 54224523 -142970909 + RSINE1 SINE B4 11 137 -28 3 998 237 65 0 0 chr1 54224524 54224555 -142970877 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 998 306 0 0 0 chr1 54225418 54225452 -142969980 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 998 369 0 0 0 chr1 54225452 54225492 -142969940 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 998 435 271 31 0 chr1 54225498 54225594 -142969838 - RSINE1 SINE B4 -21 144 46 3 998 2223 143 82 6 chr1 54225594 54225959 -142969473 + ORR1B1 LTR MaLR 2 394 0 3 998 680 296 21 11 chr1 54225980 54226171 -142969261 + ORR1D2 LTR MaLR 1 193 -177 3 998 1197 230 160 40 chr1 54226295 54226702 -142968730 - ORR1D2-int LTR MaLR -859 511 40 3 998 2426 105 23 3 chr1 54226702 54227054 -142968378 + RLTR15 LTR ERVK 1 359 0 3 998 1100 230 169 42 chr1 54227054 54227098 -142968334 - ORR1D2-int LTR MaLR -1470 39 3 3 998 1128 234 100 21 chr1 54227109 54227440 -142967992 - ORR1D2 LTR MaLR -13 357 1 3 998 466 279 55 104 chr1 54227578 54227742 -142967690 - RSINE1 SINE B4 0 165 10 3 998 522 316 19 19 chr1 54227871 54228026 -142967406 + ID_B1 SINE B4 70 224 0 3 998 219 214 0 0 chr1 54228720 54228790 -142966642 + GA-rich Low_complexity Low_complexity 1 70 0 3 998 222 37 0 0 chr1 54229845 54229872 -142965560 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 998 306 0 0 0 chr1 54229951 54229985 -142965447 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 998 221 0 35 0 chr1 54230516 54230545 -142964887 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3 998 209 182 0 0 chr1 54230861 54230894 -142964538 + polypurine Low_complexity Low_complexity 5 37 0 3 998 709 168 13 7 chr1 54230894 54231044 -142964388 + GA-rich Low_complexity Low_complexity 1 151 0 3 998 225 0 0 0 chr1 54231169 54231194 -142964238 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 998 273 57 0 0 chr1 54231693 54231728 -142963704 + (T)n Simple_repeat Simple_repeat 1 35 0 3 998 1199 69 7 0 chr1 54231728 54231873 -142963559 - B1_Mus1 SINE Alu 0 148 3 3 998 291 28 0 0 chr1 54232691 54232727 -142962705 + (A)n Simple_repeat Simple_repeat 1 36 0 3 998 347 300 33 0 chr1 54232801 54232921 -142962511 + L1MB4 LINE L1 5642 5765 -406 3 998 415 240 49 16 chr1 54233051 54233174 -142962258 + L1MB4 LINE L1 5841 5967 -213 3 998 558 263 0 0 chr1 54233191 54233309 -142962123 + ID_B1 SINE B4 99 216 -8 3 998 449 219 500 30 chr1 54233321 54233519 -142961913 + B4 SINE B4 1 291 -1 4 998 247 317 58 0 chr1 54233528 54233648 -142961784 + L1MB2 LINE L1 5959 6085 -86 4 998 284 287 78 19 chr1 54233663 54233676 -142961756 + ID SINE ID 71 89 -135 4 998 437 185 120 0 chr1 54233676 54233768 -142961664 + B1_Mur2 SINE Alu 1 103 -46 4 998 678 295 103 80 chr1 54233784 54234123 -142961309 + MLT1A0 LTR MaLR 11 357 -8 4 998 311 279 19 96 chr1 54234145 54234253 -142961179 + AluG_3 SINE Alu 3 217 -94 4 998 1310 102 11 6 chr1 54234293 54234470 -142960962 + B2_Mm1t SINE B2 2 179 -14 4 998 395 85 336 62 chr1 54234535 54234648 -142960784 + B2_Mm2 SINE B2 47 190 -5 4 998 232 291 0 0 chr1 54235315 54235370 -142960062 + GA-rich Low_complexity Low_complexity 2 56 0 4 998 443 320 55 0 chr1 54235437 54235637 -142959795 + L1MA9 LINE L1 4381 4591 -1552 4 998 274 252 235 0 chr1 54235741 54235860 -142959572 - B1F SINE Alu -1 148 2 4 998 525 273 20 20 chr1 54235862 54236015 -142959417 + L1MA9 LINE L1 4603 4755 -1388 4 998 598 292 165 49 chr1 54236055 54236581 -142958851 + L1MA9 LINE L1 4911 5502 -810 4 998 765 244 26 13 chr1 54236581 54236735 -142958697 + RSINE1 SINE B4 2 157 -8 4 998 252 0 0 0 chr1 54236740 54236768 -142958664 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 998 598 286 173 82 chr1 54236768 54237489 -142957943 + L1MA9 LINE L1 5503 6310 -2 4 998 843 46 0 0 chr1 54237499 54237607 -142957825 + (GGGGA)n Simple_repeat Simple_repeat 3 110 0 4 998 2301 129 124 2 chr1 54237676 54238080 -142957352 + RMER6B LTR ERVK 9 461 0 4 998 542 221 89 30 chr1 54238090 54238225 -142957207 + B3A SINE B2 27 169 -29 4 998 284 0 28 0 chr1 54238225 54238261 -142957171 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 998 235 47 93 0 chr1 54238530 54238573 -142956859 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 4 998 992 148 0 39 chr1 54238661 54238816 -142956616 - B1_Mur4 SINE Alu 0 150 2 4 998 360 0 0 0 chr1 54239749 54239789 -142955643 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 998 269 255 112 0 chr1 54239963 54240061 -142955371 + L1MA6 LINE L1 6168 6276 -24 4 998 250 191 0 0 chr1 54240120 54240162 -142955270 - MER5A1 DNA MER1_type -52 114 73 4 998 387 0 0 0 chr1 54241431 54241474 -142953958 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 998 44 20 0 0 chr1 54241645 54241696 -142953736 + AT_rich Low_complexity Low_complexity 1 51 0 4 998 3733 142 5 30 chr1 54241830 54242439 -142952993 + RLTR17 LTR ERVK 98 691 -1 4 998 1738 212 97 13 chr1 54243114 54243569 -142951863 + RLTR16 LTR ERVK 1 493 -12 4 998 599 248 0 31 chr1 54244162 54244291 -142951141 + RSINE1 SINE B4 26 150 -15 4 998 201 74 0 0 chr1 54244292 54244319 -142951113 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 998 564 29 0 0 chr1 54244322 54244392 -142951040 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 998 1406 329 108 19 chr1 54244448 54245236 -142950196 - Charlie25 DNA MER1_type -1230 1294 437 4 998 267 333 0 0 chr1 54245449 54245506 -142949926 + ID4_ SINE ID 1 57 -26 4 998 1095 218 24 0 chr1 54245698 54245909 -142949523 + B3 SINE B2 1 216 0 4 998 291 306 16 94 chr1 54245980 54246171 -142949261 + L2a LINE L2 2904 3079 -340 4 998 701 87 9 0 chr1 54246171 54246286 -142949146 + (TG)n Simple_repeat Simple_repeat 2 117 0 4 998 247 336 29 112 chr1 54246286 54246378 -142949054 + L2a LINE L2 3080 3164 -262 4 998 242 260 184 13 chr1 54246389 54246541 -142948891 + L2a LINE L2 3249 3426 0 4 998 239 259 185 0 chr1 54246953 54247034 -142948398 + PB1D10 SINE Alu 4 99 -18 4 998 692 239 69 78 chr1 54247074 54247278 -142948154 - B3 SINE B2 -14 202 1 4 998 879 295 36 24 chr1 54247333 54247583 -142947849 + MTEa LTR MaLR 1 253 -126 4 998 626 244 0 0 chr1 54248648 54248763 -142946669 + PB1D10 SINE Alu 1 115 -2 4 998 22 35 0 0 chr1 54251344 54251373 -142944059 + GC_rich Low_complexity Low_complexity 1 29 0 4 998 198 0 0 0 chr1 54251828 54251850 -142943582 + (CCG)n Simple_repeat Simple_repeat 2 23 0 4 998 243 218 156 33 chr1 54252166 54252256 -142943176 + MIRc SINE MIR 121 221 -47 4 998 238 337 57 19 chr1 54253642 54253748 -142941684 + Arthur1B DNA Tip100 39 148 -1077 4 998 493 321 45 40 chr1 54253760 54253958 -142941474 + MLT1A0 LTR MaLR 1 199 -166 4 998 730 244 89 54 chr1 54253968 54254284 -142941148 + RLTR15 LTR ERVK 3 329 -30 4 998 243 258 271 28 chr1 54254541 54254788 -142940644 + Arthur1B DNA Tip100 918 1224 -1 4 998 29 70 0 0 chr1 54254794 54254851 -142940581 + AT_rich Low_complexity Low_complexity 1 57 0 4 998 562 259 48 101 chr1 54255153 54255342 -142940090 - B3A SINE B2 -11 205 27 4 998 4913 37 0 0 chr1 54255343 54255887 -142939545 - L1Md_T LINE L1 0 6582 6039 4 998 5458 54 0 21 chr1 54255887 54256586 -142938846 - L1Md_Gf LINE L1 -5448 1074 391 4 998 216 163 0 0 chr1 54256649 54256692 -142938740 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 998 729 203 68 0 chr1 54256703 54256836 -142938596 - B1_Mur2 SINE Alu -7 142 1 4 998 791 87 9 0 chr1 54256836 54256951 -142938481 - MTB LTR MaLR -1 399 284 4 998 1514 58 5 0 chr1 54256941 54257131 -142938301 + MTB LTR MaLR 210 400 0 4 998 7358 95 20 67 chr1 54257131 54258281 -142937151 + MTB-int LTR MaLR 1 1096 -2 4 998 3137 93 2 5 chr1 54258283 54258684 -142936748 + MTB LTR MaLR 1 400 0 4 998 267 268 129 93 chr1 54258696 54258836 -142936596 - B4A SINE B4 -44 248 104 4 998 26525 140 23 2 chr1 54258979 54260964 -142934468 - Lx LINE L1 -1 6653 4640 4 998 342 0 36 36 chr1 54260964 54261019 -142934413 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 124 26525 145 19 4 chr1 54261019 54265174 -142930258 - Lx LINE L1 -1244 4639 411 4 999 313 357 9 0 chr1 54265185 54265297 -142930135 - PB1D9 SINE Alu -7 113 1 4 999 218 261 0 68 chr1 54265234 54265308 -142930124 - B4A SINE B4 -143 149 81 4 999 23 68 0 0 chr1 54265567 54265611 -142929821 + AT_rich Low_complexity Low_complexity 1 44 0 4 999 2019 181 51 24 chr1 54266362 54266736 -142928696 - ORR1C2 LTR MaLR 0 384 1 4 999 346 277 35 26 chr1 54266896 54267011 -142928421 + PB1D10 SINE Alu 2 117 0 4 999 1872 211 82 3 chr1 54267064 54267454 -142927978 + MTC LTR MaLR 1 421 0 4 999 2069 129 16 84 chr1 54267405 54267785 -142927647 - ORR1B1 LTR MaLR 0 394 41 4 999 300 236 0 27 chr1 54267771 54267845 -142927587 + MTC LTR MaLR 343 414 -7 4 999 1223 109 57 0 chr1 54267971 54268146 -142927286 + B2_Mm2 SINE B2 5 189 -6 4 999 3057 51 2 5 chr1 54269327 54269720 -142925712 + MTB LTR MaLR 1 392 -8 4 999 276 53 0 0 chr1 54269816 54269854 -142925578 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 999 746 247 0 43 chr1 54269865 54270026 -142925406 + RSINE1 SINE B4 12 165 0 4 999 328 319 66 7 chr1 54270095 54270231 -142925201 + L1ME3A LINE L1 5762 5905 -268 4 999 291 311 0 0 chr1 54270234 54270295 -142925137 + ID SINE ID 1 61 -163 4 999 249 342 50 12 chr1 54270295 54270314 -142925118 + ID2 SINE ID 1 83 0 4 999 877 304 80 9 chr1 54270455 54270794 -142924638 + MLT1A0 LTR MaLR 1 363 -2 4 999 655 240 229 32 chr1 54270855 54271230 -142924202 + L1MB3 LINE L1 5671 6119 -64 4 999 821 120 0 8 chr1 54271851 54271985 -142923447 + (TCC)n Simple_repeat Simple_repeat 3 135 0 4 999 1076 37 7 7 chr1 54271985 54272122 -142923310 - B1_Mm SINE Alu -5 142 6 4 999 450 186 15 131 chr1 54272015 54272145 -142923287 - MT2B LTR ERVL -337 264 150 4 999 465 305 30 72 chr1 54272690 54272856 -142922576 - MLT1D LTR MaLR -69 436 278 4 999 24 32 0 0 chr1 54273006 54273037 -142922395 + AT_rich Low_complexity Low_complexity 1 31 0 4 999 866 238 121 32 chr1 54273100 54273348 -142922084 - B4A SINE B4 -22 270 1 4 999 2027 135 34 6 chr1 54273810 54274130 -142921302 - ORR1A4 LTR MaLR 0 329 1 4 999 261 224 70 12 chr1 54274912 54274998 -142920434 + ORR1D2 LTR MaLR 280 370 0 4 999 247 218 72 38 chr1 54275161 54275301 -142920131 + Lx2B LINE L1 6897 7053 -5 4 999 297 214 0 0 chr1 54275364 54275462 -142919970 + CT-rich Low_complexity Low_complexity 2 99 0 4 999 605 168 26 76 chr1 54275498 54275642 -142919790 - B1_Mur1 SINE Alu -17 132 1 4 999 28 61 0 0 chr1 54275849 54275898 -142919534 + AT_rich Low_complexity Low_complexity 1 49 0 4 999 432 317 80 65 chr1 54277153 54277416 -142918016 - RMER2 LTR ERV1 -11 556 290 4 999 1428 87 27 0 chr1 54277608 54277793 -142917639 + B2_Mm1a SINE B2 1 190 -3 4 999 1990 169 51 20 chr1 54278030 54278381 -142917051 - Lx4B LINE L1 0 7058 6697 4 999 2258 113 153 54 chr1 54278383 54278762 -142916670 - RLTR47_MM LTR ERV1 0 532 117 4 999 2307 81 36 3 chr1 54278762 54279071 -142916361 + L1_Mus3 LINE L1 6318 6636 -2 4 999 2258 113 153 54 chr1 54279071 54279175 -142916257 - RLTR47_MM LTR ERV1 -416 116 2 4 999 3569 154 59 21 chr1 54279176 54279376 -142916056 - Lx4B LINE L1 -360 6698 6497 4 999 3409 51 5 2 chr1 54279376 54279771 -142915661 + MTA_Mm LTR MaLR 1 396 0 4 999 3569 154 59 21 chr1 54279771 54280232 -142915200 - Lx4B LINE L1 -562 6496 6012 4 999 551 328 71 21 chr1 54280274 54280514 -142914918 - MTE2b LTR MaLR -117 262 11 4 999 516 289 23 17 chr1 54280648 54280824 -142914608 + L1MEf LINE L1 568 744 -5456 4 999 632 276 43 16 chr1 54280824 54281012 -142914420 - MER58B DNA MER1_type 0 341 149 4 999 870 76 0 0 chr1 54281023 54281142 -142914290 + (TATG)n Simple_repeat Simple_repeat 2 120 0 4 999 3000 147 37 12 chr1 54281142 54281623 -142913809 - Lx4B LINE L1 -120 6938 6446 4 999 365 308 15 8 chr1 54281746 54281877 -142913555 + L1MEf LINE L1 756 887 -5313 4 999 436 254 27 88 chr1 54281879 54282026 -142913406 - ID_B1 SINE B4 0 224 87 4 999 3395 190 26 5 chr1 54282336 54282982 -142912450 - Lx9 LINE L1 -2 7642 6983 4 999 616 185 223 21 chr1 54283082 54283320 -142912112 + Lx9 LINE L1 6168 6453 -1191 4 999 2511 142 12 19 chr1 54283320 54283742 -142911690 - RMER6B LTR ERVK 0 461 43 4 999 2389 177 29 46 chr1 54283744 54284288 -142911144 + RLTR31_Mm LTR ERVK 3 537 -24 4 999 557 243 122 58 chr1 54284287 54284475 -142910957 + RLTR31_Mm LTR ERVK 362 561 0 5 999 314 109 18 35 chr1 54284475 54284520 -142910912 - RMER6B LTR ERVK -417 44 1 5 999 2306 185 127 26 chr1 54284520 54285025 -142910407 + Lx9 LINE L1 6448 7003 -641 4 999 1730 212 163 23 chr1 54285119 54285687 -142909745 + RMER19A LTR ERVK 1 591 -20 5 999 2338 133 105 24 chr1 54285718 54286176 -142909256 + RLTR28 LTR ERVL 3 497 -27 5 999 2352 173 203 36 chr1 54286855 54287348 -142908084 - RMER15 LTR ERVL 0 575 1 5 999 3160 152 19 12 chr1 54287431 54287949 -142907483 + RLTR28 LTR ERVL 1 522 -2 5 999 925 296 141 27 chr1 54288195 54288598 -142906834 - LTR40b LTR ERVL -3 459 11 5 999 290 265 180 20 chr1 54288694 54288794 -142906638 - RSINE1 SINE B4 -39 126 11 5 999 498 299 72 105 chr1 54288858 54289191 -142906241 - MTEb LTR MaLR -2 377 56 5 999 11388 128 67 19 chr1 54290219 54292014 -142903418 + L1VL2 LINE L1 456 2357 -1258 5 999 3077 81 15 15 chr1 54292014 54292414 -142903018 - MTB LTR MaLR 0 400 1 5 999 11388 127 32 23 chr1 54292414 54292923 -142902509 + L1VL2 LINE L1 2358 2878 -737 5 999 5754 108 37 44 chr1 54293436 54294292 -142901140 + Lx2A1 LINE L1 6148 6997 -11 5 999 180 176 0 0 chr1 54294433 54294467 -142900965 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 999 539 294 79 0 chr1 54294661 54294787 -142900645 - ID_B1 SINE B4 -6 218 83 5 999 526 262 16 24 chr1 54294855 54294980 -142900452 + B1_Mur1 SINE Alu 25 148 -1 5 999 777 283 161 20 chr1 54295540 54296225 -142899207 + L1MD LINE L1 3125 3905 -2241 5 999 213 65 0 0 chr1 54296340 54296371 -142899061 + (A)n Simple_repeat Simple_repeat 1 31 0 5 999 234 243 35 0 chr1 54296403 54296472 -142898960 + B1_Mus1 SINE Alu 40 112 -8 5 999 23 68 0 0 chr1 54296592 54296636 -142898796 + AT_rich Low_complexity Low_complexity 1 44 0 5 999 757 297 94 105 chr1 54296684 54297161 -142898271 - RLTR11A2 LTR ERVK -55 472 1 5 999 520 157 118 15 chr1 54297206 54297342 -142898090 - Lx9 LINE L1 -1 7643 7494 5 999 1134 171 55 35 chr1 54297340 54297595 -142897837 + L1_Rod LINE L1 3195 3454 -2393 5 999 290 298 23 123 chr1 54297635 54297765 -142897667 + MER2 DNA MER2_type 215 331 -14 5 999 342 0 0 0 chr1 54297862 54297900 -142897532 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 999 653 195 239 47 chr1 54297901 54298180 -142897252 - RMER16 LTR ERVK -55 478 3 5 999 2679 132 5 2 chr1 54298182 54298576 -142896856 - RMER16-int LTR ERVK 0 5406 5012 5 999 653 277 53 36 chr1 54298694 54298941 -142896491 + MER2 DNA MER2_type 92 342 -3 5 999 280 264 147 47 chr1 54298949 54299160 -142896272 + L1M4 LINE L1 4721 4952 -1194 5 999 728 233 0 8 chr1 54299311 54299445 -142895987 - RSINE1 SINE B4 -31 134 2 5 999 225 0 0 0 chr1 54299777 54299802 -142895630 + (T)n Simple_repeat Simple_repeat 1 25 0 5 999 383 40 0 0 chr1 54299802 54299852 -142895580 - B1_Mm SINE Alu 0 147 98 5 999 1332 48 0 0 chr1 54300124 54300271 -142895161 + B1_Mm SINE Alu 1 147 0 5 999 252 86 0 0 chr1 54300288 54300323 -142895109 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 999 342 0 0 0 chr1 54300451 54300489 -142894943 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 999 35441 32 2 1 chr1 54301033 54305945 -142889487 - L1Md_T LINE L1 -1 6581 1662 5 999 1055 0 0 0 chr1 54305945 54306052 -142889380 - U6 snRNA snRNA 0 107 1 5 999 375 279 56 37 chr1 54306138 54306246 -142889186 + PB1D10 SINE Alu 1 110 -7 5 999 225 0 0 0 chr1 54306643 54306668 -142888764 + (T)n Simple_repeat Simple_repeat 1 25 0 5 999 202 222 56 0 chr1 54307063 54307117 -142888315 + CT-rich Low_complexity Low_complexity 1 57 0 5 999 207 0 0 0 chr1 54308263 54308286 -142887146 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 5 999 588 226 88 35 chr1 54308672 54308842 -142886590 + ID_B1 SINE B4 37 215 -9 5 999 236 239 122 40 chr1 54308778 54308852 -142886580 + B1_Mur2 SINE Alu 68 147 -2 5 999 296 257 40 0 chr1 54309133 54309207 -142886225 + CT-rich Low_complexity Low_complexity 3 79 0 5 999 354 274 44 9 chr1 54309238 54309352 -142886080 - B4A SINE B4 -1 291 174 5 999 1330 192 63 60 chr1 54309418 54309784 -142885648 + L1_Rod LINE L1 4491 4857 -990 5 999 345 208 28 0 chr1 54309810 54309882 -142885550 - B3 SINE B2 -111 84 11 5 999 243 229 0 0 chr1 54309945 54310006 -142885426 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 5 999 2181 176 32 8 chr1 54310054 54310454 -142884978 + MTC LTR MaLR 12 421 0 5 999 218 287 112 56 chr1 54310770 54310877 -142884555 - L2a LINE L2 -2 3424 3312 5 999 312 329 128 12 chr1 54311057 54311229 -142884203 - L2a LINE L2 -659 2760 2569 5 999 582 190 134 85 chr1 54311282 54311350 -142884082 - L1_Rod LINE L1 -1393 4454 4402 5 999 2440 146 23 10 chr1 54311350 54311739 -142883693 - ORR1B1 LTR MaLR 0 394 1 5 999 582 190 134 85 chr1 54311739 54311871 -142883561 - L1_Rod LINE L1 -1446 4401 4244 5 999 2058 173 29 40 chr1 54311898 54312344 -142883088 - L1_Rod LINE L1 -3095 2752 2312 5 999 1479 202 177 25 chr1 54312341 54312915 -142882517 - L1_Rod LINE L1 -6450 1158 498 5 999 322 256 188 52 chr1 54312917 54313204 -142882228 - L1ME3B LINE L1 -249 5991 5666 5 999 254 73 24 0 chr1 54313949 54313990 -142881442 + (TATG)n Simple_repeat Simple_repeat 1 42 0 5 999 1700 189 103 0 chr1 54313992 54314331 -142881101 - ORR1D1 LTR MaLR 0 374 1 5 999 1581 200 75 23 chr1 54314886 54315116 -142880316 + ORR1D1 LTR MaLR 1 227 -147 5 999 231 36 0 0 chr1 54315116 54315144 -142880288 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 5 999 1581 200 75 23 chr1 54315144 54315261 -142880171 + ORR1D1 LTR MaLR 228 365 -9 5 999 753 263 119 0 chr1 54315525 54315719 -142879713 - ID_B1 SINE B4 -6 218 2 5 999 277 291 164 11 chr1 54315792 54315969 -142879463 + MTEb LTR MaLR 174 377 -2 5 999 398 363 32 0 chr1 54316504 54316628 -142878804 - MLT1I LTR MaLR -126 285 158 5 999 1552 225 79 9 chr1 54317087 54317428 -142878004 - ORR1D2 LTR MaLR -4 366 2 5 999 298 276 34 22 chr1 54317433 54317522 -142877910 - ORR1E LTR MaLR -1 358 269 5 999 807 274 61 72 chr1 54318313 54318577 -142876855 + B4A SINE B4 9 269 -23 5 999 430 303 107 0 chr1 54318588 54318710 -142876722 - B4A SINE B4 -156 136 2 5 999 869 278 54 20 chr1 54318720 54319073 -142876359 - L1M3de LINE L1 -1907 4822 4458 5 999 1359 276 81 5 chr1 54319085 54319457 -142875975 - L1M3de LINE L1 -5284 1369 970 5 999 506 291 135 19 chr1 54319707 54319905 -142875527 - L1M3de LINE L1 -6051 602 408 5 999 414 194 153 72 chr1 54321932 54322038 -142873394 + B1_Mur1 SINE Alu 9 124 -25 5 999 423 0 0 0 chr1 54322038 54322085 -142873347 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 999 1204 180 10 10 chr1 54322091 54322293 -142873139 + B3 SINE B2 9 210 -6 5 999 39368 6 0 0 chr1 54322310 54327880 -142867552 + L1Md_A LINE L1 18 5586 -297 5 999 9658 1 0 0 chr1 54327880 54328876 -142866556 + L1Md_A LINE L1 5587 6582 0 5 999 427 123 0 0 chr1 54328877 54328934 -142866498 - MERVK26-int LTR ERVK -3344 3575 3519 5 999 503 311 57 49 chr1 54328962 54329201 -142866231 + B4A SINE B4 40 292 0 5 999 538 246 138 46 chr1 54329818 54330035 -142865397 - Lx7 LINE L1 -816 6880 6644 5 999 9841 84 21 11 chr1 54330057 54331898 -142863534 - Lx3A LINE L1 -2 6979 5133 5 999 1619 269 44 23 chr1 54331899 54332375 -142863057 - Lx8 LINE L1 -814 6659 6174 5 999 2537 162 32 39 chr1 54332460 54332993 -142862439 - RLTR31_Mur LTR ERVK -24 529 1 5 999 907 256 94 8 chr1 54333202 54333596 -142861836 - L1MC LINE L1 -655 5689 5262 5 999 269 297 133 109 chr1 54333620 54333987 -142861445 + MLT1A1 LTR MaLR 31 406 -2 5 999 602 286 14 10 chr1 54333989 54334197 -142861235 - L1MC LINE L1 -884 5262 5054 5 999 220 406 75 0 chr1 54334760 54334866 -142860566 - MIR3 SINE MIR -13 195 82 5 999 310 352 31 0 chr1 54335250 54335378 -142860054 - MER3 DNA MER1_type -38 171 40 5 999 387 0 0 0 chr1 54335874 54335917 -142859515 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 999 1472 53 5 0 chr1 54337808 54337996 -142857436 - L1_Mus1 LINE L1 0 6567 6379 5 999 1269 13 0 0 chr1 54337996 54338148 -142857284 + L1_Mus1 LINE L1 6224 6375 -192 5 999 422 278 41 0 chr1 54338329 54338426 -142857006 - PB1D10 SINE Alu 0 117 17 5 999 450 0 0 0 chr1 54338649 54338699 -142856733 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 999 3269 182 48 14 chr1 54339509 54340172 -142855260 - Lx5 LINE L1 0 7050 6365 5 999 860 71 24 0 chr1 54340213 54340339 -142855093 - L1_Mus2 LINE L1 -1 6565 6437 5 999 3375 161 35 8 chr1 54340370 54340977 -142854455 - Lx2B LINE L1 -18 6982 6360 5 999 535 293 20 77 chr1 54340984 54341232 -142854200 - L1MC1 LINE L1 -19 6314 6081 5 999 347 248 7 0 chr1 54341258 54341395 -142854037 + (TA)n Simple_repeat Simple_repeat 1 138 0 5 999 509 211 178 0 chr1 54341431 54341611 -142853821 - L1MC1 LINE L1 -349 5984 5773 5 999 1327 99 11 0 chr1 54341633 54341815 -142853617 - B2_Mm1t SINE B2 -8 185 2 5 999 423 274 137 0 chr1 54341944 54342148 -142853284 - L1MC1 LINE L1 -578 5755 5524 5 999 943 241 190 0 chr1 54342706 54343017 -142852415 - MTEb LTR MaLR 0 379 10 5 999 252 314 120 44 chr1 54343397 54343580 -142851852 - MIR SINE MIR -1 261 65 5 999 261 345 71 18 chr1 54343704 54343816 -142851616 + ID_B1 SINE B4 81 198 -26 5 999 2601 250 127 25 chr1 54344527 54345525 -142849907 - Lx8 LINE L1 -86 7387 6288 5 999 396 70 41 14 chr1 54345827 54345900 -142849532 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 5 999 211 363 88 0 chr1 54345900 54346002 -142849430 - B1F SINE Alu 0 149 39 5 999 317 247 0 64 chr1 54346023 54346101 -142849331 - PB1D10 SINE Alu -22 95 23 5 999 983 242 0 34 chr1 54346295 54346347 -142849085 - B3 SINE B2 0 216 167 5 999 621 100 0 0 chr1 54346347 54346437 -142848995 + (TA)n Simple_repeat Simple_repeat 1 90 0 5 999 983 242 0 34 chr1 54346437 54346593 -142848839 - B3 SINE B2 -50 166 15 5 999 30 59 0 0 chr1 54347259 54347310 -142848122 + AT_rich Low_complexity Low_complexity 1 51 0 5 999 1779 110 61 14 chr1 54347858 54348152 -142847280 + L1VL2 LINE L1 201 508 -5827 5 999 1656 53 13 0 chr1 54348161 54348460 -142846972 + L1VL2 LINE L1 801 1102 -2513 5 999 30790 88 17 13 chr1 54348460 54354000 -142841432 + L1Md_F2 LINE L1 7 5586 -297 5 999 7194 95 0 8 chr1 54354001 54354995 -142840437 + L1Md_F2 LINE L1 5588 6573 -9 5 999 251 28 28 0 chr1 54355049 54355085 -142840347 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 999 4121 106 42 3 chr1 54355085 54355787 -142839645 + MusHAL1 LINE L1 192 923 -1789 6 999 234 371 0 0 chr1 54355932 54356021 -142839411 - PB1D10 SINE Alu -2 115 27 6 999 238 228 187 56 chr1 54356814 54356921 -142838511 + B2_Mm2 SINE B2 1 121 -74 6 999 280 284 106 20 chr1 54358455 54358676 -142836756 - L1MA5 LINE L1 -212 6088 5858 6 999 1142 64 0 0 chr1 54358732 54358872 -142836560 - B1_Mus1 SINE Alu -8 140 1 6 999 439 208 45 45 chr1 54358929 54359085 -142836347 - L1M4 LINE L1 -1451 4695 4540 6 999 1060 267 82 57 chr1 54359188 54359727 -142835705 - L1M4 LINE L1 -2155 3991 3445 6 999 699 83 0 0 chr1 54359727 54359835 -142835597 + (TC)n Simple_repeat Simple_repeat 2 109 0 6 999 243 0 0 0 chr1 54359835 54359861 -142835571 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 999 1060 267 82 57 chr1 54359861 54360055 -142835377 - L1M4 LINE L1 -2702 3444 3240 6 999 441 226 71 3 chr1 54360151 54360296 -142835136 - L1M4 LINE L1 -3303 2843 2693 6 999 433 242 0 29 chr1 54360515 54360617 -142834815 + Lx9 LINE L1 6753 6851 -793 6 999 434 299 121 33 chr1 54360623 54360896 -142834536 - L1M5 LINE L1 -2129 4017 3721 6 999 1200 220 32 44 chr1 54361027 54361369 -142834063 + Lx7 LINE L1 7070 7407 -289 6 999 353 294 75 27 chr1 54362314 54362461 -142832971 + MIRb SINE MIR 60 213 -55 6 999 181 308 113 19 chr1 54363100 54363206 -142832226 + MIRb SINE MIR 153 268 0 6 999 1503 196 137 9 chr1 54363232 54363567 -142831865 - MTD LTR MaLR 0 419 42 6 999 207 0 0 0 chr1 54363578 54363601 -142831831 + (A)n Simple_repeat Simple_repeat 1 23 0 6 999 1793 222 18 70 chr1 54363884 54364554 -142830878 - Lx6 LINE L1 -6 7454 6834 6 999 365 270 0 13 chr1 54364730 54364805 -142830627 + ID4 SINE ID 10 83 0 6 999 1056 110 0 0 chr1 54364813 54364958 -142830474 + B1_Mus2 SINE Alu 1 145 -2 6 999 1223 41 0 0 chr1 54365496 54365642 -142829790 + B1_Mm SINE Alu 2 147 0 6 999 336 24 0 0 chr1 54365643 54365684 -142829748 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 999 26 0 0 0 chr1 54365967 54365993 -142829439 + AT_rich Low_complexity Low_complexity 1 26 0 6 999 8244 79 63 67 chr1 54366124 54367514 -142827918 - RLTR22_Mur LTR ERVK 0 1848 464 6 999 205 65 0 80 chr1 54367564 54367595 -142827837 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 999 1104 62 7 14 chr1 54367595 54367742 -142827690 - B1_Mm SINE Alu 0 147 2 6 999 205 65 0 80 chr1 54367742 54367760 -142827672 + (TTTTTG)n Simple_repeat Simple_repeat 4 19 0 6 999 3822 71 8 6 chr1 54367760 54367974 -142827458 - RLTR22_Mus LTR ERVK -1294 514 304 6 999 413 92 0 13 chr1 54367974 54368051 -142827381 - L1Md_F2 LINE L1 -1 6581 6506 6 999 3822 71 8 6 chr1 54368051 54368349 -142827083 - RLTR22_Mus LTR ERVK -1505 303 3 6 999 413 301 53 5 chr1 54368451 54368638 -142826794 - Lx9 LINE L1 -227 7417 7222 6 999 7764 43 10 2 chr1 54368634 54369830 -142825602 - L1Md_F2 LINE L1 -1 6581 5376 6 999 2290 255 31 47 chr1 54369845 54370562 -142824870 - Lx9 LINE L1 -435 7209 6505 6 999 208 184 60 20 chr1 54371504 54371554 -142823878 - MER5B DNA MER1_type -2 176 125 6 999 16180 108 4 10 chr1 54371726 54372172 -142823260 + L1_Mus1 LINE L1 3364 3791 -2092 6 999 1160 56 14 0 chr1 54372172 54372316 -142823116 - B1_Mm SINE Alu 0 147 2 6 999 16180 108 4 10 chr1 54372316 54373450 -142821982 + L1_Mus1 LINE L1 3792 4934 -949 6 999 3566 46 0 0 chr1 54373450 54373881 -142821551 - L1Md_T LINE L1 0 6582 6152 6 999 16180 83 10 4 chr1 54373881 54375500 -142819932 + L1_Mus1 LINE L1 4935 6563 -4 6 999 191 233 150 0 chr1 54375585 54375645 -142819787 + MER5B DNA MER1_type 78 146 -32 6 999 273 313 81 0 chr1 54375645 54375744 -142819688 + PB1D10 SINE Alu 1 107 -10 6 999 1185 233 314 22 chr1 54376216 54376704 -142818728 + RMER19B LTR ERVK 273 902 0 6 999 242 266 159 39 chr1 54377547 54377754 -142817678 - L1ME3 LINE L1 -56 6106 5875 6 999 1754 199 81 8 chr1 54377847 54378217 -142817215 - RLTR1 LTR ERV1 0 624 228 6 999 4566 191 35 34 chr1 54378385 54379707 -142815725 - MMVL30-int LTR ERV1 -2386 5392 2874 6 999 4014 169 30 45 chr1 54379712 54380743 -142814689 - MMVL30-int LTR ERV1 -2409 2654 1501 6 999 594 0 0 0 chr1 54380899 54380965 -142814467 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 6 999 334 137 27 0 chr1 54381142 54381215 -142814217 - MMVL30-int LTR ERV1 -2186 1512 1438 6 999 558 133 61 202 chr1 54381226 54381424 -142814008 - MMVL30-int LTR ERV1 -2170 1129 960 6 999 3160 117 51 94 chr1 54381511 54382222 -142813210 - MMVL30-int LTR ERV1 -2245 1453 774 6 999 186 133 0 0 chr1 54382507 54382537 -142812895 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 999 676 159 54 4 chr1 54382692 54382920 -142812512 - MMVL30-int LTR ERV1 -7256 300 1 6 999 1675 204 81 11 chr1 54382920 54383291 -142812141 - RLTR1 LTR ERV1 0 624 228 6 999 333 0 0 0 chr1 54384153 54384190 -142811242 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 999 3343 103 50 30 chr1 54384499 54385230 -142810202 - RLTR13C2 LTR ERVK 0 1033 29 6 999 356 308 74 37 chr1 54385206 54385314 -142810118 - B1F SINE Alu -32 117 6 6 999 266 328 60 0 chr1 54385257 54385324 -142810108 - ID_B1 SINE B4 -81 143 73 6 999 774 0 0 0 chr1 54385399 54385485 -142809947 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 999 5541 136 72 8 chr1 54387340 54388263 -142807169 - Lx2 LINE L1 0 6997 6016 6 999 468 0 0 0 chr1 54389144 54389196 -142806236 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 999 496 320 106 44 chr1 54389483 54389920 -142805512 - L1M2 LINE L1 -508 5783 5219 6 999 207 0 0 0 chr1 54389920 54389943 -142805489 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 999 496 312 83 26 chr1 54389943 54390171 -142805261 - L1M2 LINE L1 -857 5286 5008 6 999 241 281 44 89 chr1 54390222 54390312 -142805120 - RSINE1 SINE B4 -59 106 21 6 999 315 0 0 0 chr1 54390983 54391018 -142804414 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 999 294 29 0 0 chr1 54391265 54391300 -142804132 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 999 1699 276 116 34 chr1 54391324 54392029 -142803403 - Lx9 LINE L1 -28 7616 6854 6 999 1116 272 65 114 chr1 54392061 54392609 -142802823 - L1M2 LINE L1 -1145 4998 4484 6 999 501 250 124 8 chr1 54392609 54392738 -142802694 - B1_Mur2 SINE Alu -5 144 1 6 999 1116 272 65 114 chr1 54392738 54392993 -142802439 - L1M2 LINE L1 -1660 4483 4235 6 999 795 227 166 71 chr1 54393003 54393300 -142802132 - MTEb LTR MaLR -2 377 47 6 999 625 298 134 27 chr1 54393300 54393562 -142801870 - B4A SINE B4 -1 291 2 6 999 795 227 166 71 chr1 54393562 54393601 -142801831 - MTEb LTR MaLR -333 46 9 6 999 1721 102 4 34 chr1 54393609 54393872 -142801560 + Lx LINE L1 6393 6647 -7 6 999 270 278 52 0 chr1 54394049 54394146 -142801286 - L1M2 LINE L1 -1922 4218 4117 6 999 197 77 51 0 chr1 54394148 54394187 -142801245 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 999 1259 55 7 0 chr1 54394188 54394334 -142801098 - B1_Mm SINE Alu 0 147 1 6 999 1031 284 40 19 chr1 54394395 54394765 -142800667 - L1M2 LINE L1 -2092 4051 3674 6 124 576 171 24 57 chr1 54394770 54394894 -142800538 - PB1D9 SINE Alu 0 120 1 6 1000 7078 162 101 31 chr1 54394903 54397875 -142797557 - Lx LINE L1 0 6654 4261 6 1000 22 80 0 0 chr1 54398056 54398106 -142797326 + AT_rich Low_complexity Low_complexity 1 50 0 6 1000 1234 48 7 0 chr1 54398189 54398334 -142797098 + B1_Mus1 SINE Alu 1 146 -2 6 1000 241 316 32 57 chr1 54398354 54398512 -142796920 - Lx7 LINE L1 -319 7377 7224 6 1000 247 193 17 34 chr1 54398708 54398767 -142796665 + (TATG)n Simple_repeat Simple_repeat 1 58 0 6 1000 872 299 52 11 chr1 54398772 54399043 -142796389 - B4A SINE B4 -9 283 2 6 1000 554 270 12 56 chr1 54399651 54399812 -142795620 + RSINE1 SINE B4 12 165 0 6 1000 202 158 26 0 chr1 54399832 54399870 -142795562 + (TAA)n Simple_repeat Simple_repeat 2 40 0 6 1000 235 326 31 0 chr1 54400845 54400943 -142794489 - RMER4A LTR ERVK -358 108 8 6 1000 1027 282 64 129 chr1 54401458 54402080 -142793352 + RLTR22_Mur LTR ERVK 1 582 -1266 6 1000 31784 103 14 12 chr1 54402166 54407612 -142787820 - L1_Mus2 LINE L1 0 6566 1123 6 1000 339 56 0 0 chr1 54407612 54407666 -142787766 - L1Md_T LINE L1 0 6582 6529 6 1000 2979 175 38 64 chr1 54407666 54408503 -142786929 - L1_Mus2 LINE L1 -5494 1122 245 6 1000 615 225 54 34 chr1 54408506 54408740 -142786692 + RLTR22_Mur LTR ERVK 594 808 -1000 6 1000 302 36 17 51 chr1 54408742 54408801 -142786631 + (CAGAG)n Simple_repeat Simple_repeat 2 58 0 6 1000 1027 236 117 103 chr1 54408801 54409081 -142786351 + RLTR22_Mur LTR ERVK 1084 1326 -522 6 1000 396 0 0 0 chr1 54409081 54409125 -142786307 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1000 1027 253 113 151 chr1 54409125 54409636 -142785796 + RLTR22_Mur LTR ERVK 860 1603 -245 6 1000 867 276 101 50 chr1 54410459 54410955 -142784477 - L1MA5 LINE L1 -7 6293 5773 6 1000 369 315 80 27 chr1 54413006 54413156 -142782276 - RSINE1 SINE B4 -5 160 3 6 1000 255 31 0 0 chr1 54413362 54413394 -142782038 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1000 610 265 0 0 chr1 54413992 54414109 -142781323 + PB1D10 SINE Alu 1 117 0 6 1000 377 259 46 9 chr1 54414126 54414235 -142781197 + RSINE1 SINE B4 4 116 -49 6 1000 1056 39 0 0 chr1 54414245 54414374 -142781058 + (CA)n Simple_repeat Simple_repeat 1 129 0 6 1000 527 239 94 30 chr1 54414900 54415103 -142780329 + Lx7 LINE L1 7477 7692 -4 6 1000 299 302 66 16 chr1 54415939 54416060 -142779372 + L1MB1 LINE L1 6042 6168 0 6 1000 638 244 44 25 chr1 54416140 54416300 -142779132 + RSINE1 SINE B4 3 165 0 6 1000 21 57 0 0 chr1 54416318 54416353 -142779079 + AT_rich Low_complexity Low_complexity 1 35 0 6 1000 204 352 173 10 chr1 54416446 54416641 -142778791 - MIRb SINE MIR -9 259 30 6 1000 22 35 0 0 chr1 54416684 54416713 -142778719 + AT_rich Low_complexity Low_complexity 1 29 0 6 1000 240 274 343 0 chr1 54416869 54416968 -142778464 + RSINE1 SINE B4 4 136 -29 6 1000 658 211 261 6 chr1 54418316 54418481 -142776951 + ID_B1 SINE B4 2 212 -12 6 1000 207 0 0 0 chr1 54418481 54418504 -142776928 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1000 40 21 0 0 chr1 54419306 54419353 -142776079 + AT_rich Low_complexity Low_complexity 1 47 0 6 1000 1399 85 37 0 chr1 54419526 54419714 -142775718 + B2_Mm2 SINE B2 1 195 0 6 1000 776 288 19 5 chr1 54419808 54420021 -142775411 + B3 SINE B2 1 216 0 6 1000 226 316 58 64 chr1 54420074 54420261 -142775171 + MIR SINE MIR 3 187 -75 6 1000 247 241 0 0 chr1 54421118 54421172 -142774260 - B3 SINE B2 -162 54 1 6 1000 308 342 119 13 chr1 54422347 54422498 -142772934 - ORR1E LTR MaLR -187 172 6 6 1000 596 236 16 8 chr1 54423338 54423466 -142771966 - Lx8 LINE L1 -742 6731 6603 6 1000 1135 235 16 109 chr1 54423774 54424085 -142771347 - B4 SINE B4 -2 290 9 6 1000 183 42 0 0 chr1 54424313 54424337 -142771095 + (GGTTG)n Simple_repeat Simple_repeat 2 25 0 6 1000 327 25 0 0 chr1 54425601 54425641 -142769791 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1000 1077 309 39 18 chr1 54426519 54426901 -142768531 + MLT1A1 LTR MaLR 19 408 0 7 1000 825 194 14 0 chr1 54427637 54427776 -142767656 + ETnERV2-int LTR ERVK 7056 7196 -210 7 1000 201 39 0 0 chr1 54428726 54428752 -142766680 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1000 4488 70 20 37 chr1 54429187 54429781 -142765651 + L1_Mus2 LINE L1 5983 6566 0 7 1000 589 178 30 0 chr1 54430051 54430152 -142765280 - L1M4 LINE L1 -2432 3714 3611 7 1000 353 123 0 15 chr1 54430152 54430218 -142765214 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 7 1000 451 250 88 70 chr1 54430224 54430452 -142764980 - L1_Rod LINE L1 -2249 3598 3367 7 1000 9405 73 32 75 chr1 54430445 54432935 -142762497 - Lx3_Mus LINE L1 0 7009 4633 7 1000 449 257 0 19 chr1 54432983 54433086 -142762346 - PB1D9 SINE Alu 0 120 20 7 1000 4126 158 18 1 chr1 54433618 54434536 -142760896 - L1_Mur3 LINE L1 -3989 1888 889 7 1000 457 118 0 0 chr1 54434983 54435051 -142760381 - Lx5 LINE L1 -1207 5843 5776 7 1000 996 128 13 0 chr1 54435047 54435203 -142760229 + L1_Mur3 LINE L1 1649 1806 -4074 7 1000 1587 152 49 0 chr1 54435263 54435526 -142759906 - Lx5 LINE L1 -116 5761 5486 7 1000 5002 198 71 16 chr1 54435525 54436624 -142758808 + Lx2B LINE L1 5836 6995 -5 7 1000 389 327 25 62 chr1 54437172 54437332 -142758100 + RSINE1 SINE B4 3 156 -9 7 1000 331 119 172 78 chr1 54438079 54438100 -142757332 + Lx9 LINE L1 7503 7520 -124 7 1000 225 0 0 0 chr1 54438100 54438125 -142757307 + (TATG)n Simple_repeat Simple_repeat 3 27 0 7 1000 331 119 172 78 chr1 54438125 54438231 -142757201 + Lx9 LINE L1 7521 7642 -2 7 1000 963 233 45 0 chr1 54438508 54438710 -142756722 - B3 SINE B2 -5 211 1 7 1000 2067 253 103 35 chr1 54438734 54439468 -142755964 - Lx9 LINE L1 -33 7611 6828 7 1000 4081 146 102 4 chr1 54439468 54440185 -142755247 - RMER21B LTR ERV1 -4 838 52 7 1000 267 263 34 8 chr1 54440464 54440583 -142754849 - Lx7 LINE L1 -10 7686 7565 7 1000 31 0 0 0 chr1 54440592 54440623 -142754809 + AT_rich Low_complexity Low_complexity 1 31 0 7 1000 999 261 91 7 chr1 54440666 54440951 -142754481 - Lx7 LINE L1 -385 7311 7003 7 1000 432 0 0 0 chr1 54441514 54441562 -142753870 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 7 1000 2462 152 36 14 chr1 54442124 54442557 -142752875 + MYSERV16_I-int LTR ERVK 1 429 -1897 7 1000 838 177 12 31 chr1 54442558 54442721 -142752711 + MYSERV16_I-int LTR ERVK 596 755 -1571 7 1000 3036 101 46 85 chr1 54442721 54443287 -142752145 - RLTR13B1 LTR ERVK -405 628 1 7 1000 603 40 0 0 chr1 54443875 54443949 -142751483 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1000 33839 35 0 0 chr1 54444022 54449551 -142745881 + L1Md_T LINE L1 1 5589 -297 7 1000 9056 4 0 0 chr1 54449551 54450597 -142744835 + L1Md_T LINE L1 5590 6585 0 7 1000 368 284 73 25 chr1 54452031 54452152 -142743280 - RSINE1 SINE B4 -20 272 78 7 1000 245 200 67 135 chr1 54452462 54452566 -142742866 - ID_B1 SINE B4 -5 219 123 7 1000 180 0 0 0 chr1 54453794 54453814 -142741618 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1000 805 184 44 0 chr1 54453953 54454089 -142741343 + B1_Mus1 SINE Alu 1 142 -6 7 1000 367 19 39 0 chr1 54454090 54454142 -142741290 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 7 1000 323 194 0 61 chr1 54454148 54454214 -142741218 + ID2 SINE ID 3 64 -19 7 1000 287 200 0 62 chr1 54454541 54454605 -142740827 - tRNA-Ala-GCY_ tRNA tRNA -15 60 1 7 1000 489 320 97 64 chr1 54455268 54455535 -142739897 + B4 SINE B4 1 276 -16 7 1000 5364 194 140 32 chr1 54456503 54458922 -142736510 + Lx9 LINE L1 4913 7644 0 7 1000 277 282 0 43 chr1 54458951 54459043 -142736389 - BC1_Mm scRNA scRNA -60 92 5 7 1000 1285 250 43 101 chr1 54459042 54459438 -142735994 + MTE2a LTR MaLR 7 379 0 7 1000 342 297 25 127 chr1 54459528 54459686 -142735746 - B3A SINE B2 -16 182 41 7 1000 843 262 74 34 chr1 54459706 54459975 -142735457 + B4A SINE B4 1 280 -12 7 1000 279 257 53 79 chr1 54460098 54460212 -142735220 + MER68 LTR ERVL 403 513 -50 7 1000 1319 84 28 0 chr1 54460597 54460775 -142734657 + B2_Mm2 SINE B2 2 184 -11 7 1000 1097 88 0 13 chr1 54461198 54461347 -142734085 - B1_Mus1 SINE Alu 0 148 2 7 1000 313 250 250 21 chr1 54461587 54461775 -142733657 - MIR SINE MIR -1 261 31 7 1000 503 231 77 0 chr1 54462530 54462647 -142732785 + B3A SINE B2 60 185 -13 7 1000 7978 29 1 0 chr1 54463127 54464073 -142731359 + RLTR13A2 LTR ERVK 10 956 -2 7 1000 48040 9 7 5 chr1 54464075 54468069 -142727363 + ETnERV3-int LTR ERVK 1 3978 -1830 7 1000 180 97 0 0 chr1 54468069 54468100 -142727332 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 7 1000 48040 9 7 5 chr1 54468100 54469903 -142725529 + ETnERV3-int LTR ERVK 3979 5806 -2 7 1000 8443 24 1 0 chr1 54469908 54470865 -142724567 + RLTR13A2 LTR ERVK 1 958 0 7 1000 346 249 30 58 chr1 54471182 54471288 -142724144 + PB1D10 SINE Alu 11 116 -33 7 1000 203 227 15 0 chr1 54471349 54471415 -142724017 + GA-rich Low_complexity Low_complexity 1 67 0 7 1000 348 269 10 19 chr1 54471426 54471562 -142723870 + ID4_ SINE ID 2 134 -18 7 1000 319 279 38 0 chr1 54473318 54473397 -142722035 + ID4 SINE ID 2 83 0 7 1000 24 53 0 0 chr1 54473769 54473807 -142721625 + AT_rich Low_complexity Low_complexity 1 38 0 7 1000 1622 47 0 5 chr1 54473865 54474078 -142721354 + L1Md_F2 LINE L1 6371 6582 0 7 1000 565 210 87 40 chr1 54474199 54474348 -142721084 + B4A SINE B4 136 291 -1 7 1000 220 300 33 0 chr1 54474820 54474880 -142720552 - B1F1 SINE Alu -86 63 2 7 1000 252 301 14 14 chr1 54475032 54475106 -142720326 - ID4 SINE ID -9 74 1 7 1000 271 283 228 11 chr1 54476660 54476849 -142718583 + L2a LINE L2 3111 3340 -86 7 1000 26 0 0 0 chr1 54476888 54476914 -142718518 + AT_rich Low_complexity Low_complexity 1 26 0 7 1000 205 152 0 0 chr1 54476928 54476961 -142718471 + GA-rich Low_complexity Low_complexity 3 35 0 7 1000 24 67 0 0 chr1 54477882 54477927 -142717505 + AT_rich Low_complexity Low_complexity 1 45 0 7 1000 243 276 171 0 chr1 54478371 54478476 -142716956 + MLT1A1 LTR MaLR 281 403 -5 7 1000 302 274 27 73 chr1 54478970 54479080 -142716352 + PB1D10 SINE Alu 13 117 0 7 1000 527 243 0 43 chr1 54479088 54479216 -142716216 + ID_B1 SINE B4 82 198 -26 7 1000 606 255 92 0 chr1 54479242 54479395 -142716037 + ID_B1 SINE B4 3 169 -55 7 1000 341 283 102 102 chr1 54479618 54479705 -142715727 + ID_B1 SINE B4 18 181 -43 7 1000 532 224 147 0 chr1 54479705 54479821 -142715611 + B1F1 SINE Alu 5 137 -12 7 1000 341 283 102 102 chr1 54479821 54479842 -142715590 + ID_B1 SINE B4 182 224 0 7 1000 275 295 13 0 chr1 54479965 54480043 -142715389 + ID4_ SINE ID 3 81 -2 7 1000 1110 52 0 0 chr1 54480156 54480290 -142715142 + B1_Mus1 SINE Alu 1 134 -14 7 1000 25 0 0 0 chr1 54480450 54480475 -142714957 + AT_rich Low_complexity Low_complexity 1 25 0 7 1000 269 324 109 49 chr1 54482290 54482556 -142712876 + L2a LINE L2 2004 2285 -1134 7 1000 698 333 67 9 chr1 54482618 54482948 -142712484 + L2a LINE L2 2592 2940 -479 7 1000 374 330 66 6 chr1 54483050 54483233 -142712199 + L2a LINE L2 3146 3339 -87 7 1000 1243 34 7 0 chr1 54484559 54484705 -142710727 + B1_Mm SINE Alu 1 147 0 7 1000 484 347 57 23 chr1 54484996 54485347 -142710085 + Lx9 LINE L1 7096 7458 -186 7 1000 24 32 0 0 chr1 54485798 54485829 -142709603 + AT_rich Low_complexity Low_complexity 1 31 0 7 1000 263 234 0 156 chr1 54486004 54486100 -142709332 - PB1D10 SINE Alu -1 116 36 7 1000 732 169 7 49 chr1 54487725 54487868 -142707564 + B1_Mur3 SINE Alu 1 137 -12 7 1000 1447 58 5 35 chr1 54488206 54488404 -142707028 + B2_Mm1t SINE B2 2 193 0 7 1000 363 250 100 32 chr1 54488405 54488595 -142706837 + L1_Mur3 LINE L1 4323 4525 -1355 7 1000 1231 288 51 82 chr1 54488603 54489215 -142706217 + Lx9 LINE L1 6404 6996 -648 7 1000 5206 127 7 1 chr1 54489211 54490464 -142704968 + Lx LINE L1 5134 6393 -261 7 1000 397 282 90 28 chr1 54490509 54490721 -142704711 + Lx9 LINE L1 7393 7617 -27 7 1000 21 0 0 0 chr1 54490868 54490889 -142704543 + AT_rich Low_complexity Low_complexity 1 21 0 7 1000 204 125 0 0 chr1 54490976 54491008 -142704424 + (TCC)n Simple_repeat Simple_repeat 2 33 0 7 1000 858 119 0 0 chr1 54491223 54491366 -142704066 + (GAGAA)n Simple_repeat Simple_repeat 5 147 0 7 1000 354 362 8 17 chr1 54491519 54491637 -142703795 + B4A SINE B4 91 207 -85 7 1000 1188 154 153 30 chr1 54491637 54491801 -142703631 + ORR1C2 LTR MaLR 11 190 -194 7 1000 747 34 50 0 chr1 54491801 54491920 -142703512 + (TC)n Simple_repeat Simple_repeat 2 126 0 7 1000 1188 154 153 30 chr1 54491920 54492017 -142703415 + ORR1C2 LTR MaLR 191 304 -80 7 1000 677 73 0 10 chr1 54492025 54492122 -142703310 + (GAAAA)n Simple_repeat Simple_repeat 3 98 0 7 1000 495 158 0 12 chr1 54492126 54492209 -142703223 + ORR1C2 LTR MaLR 303 384 0 7 1000 527 211 0 0 chr1 54492209 54492303 -142703129 + B4A SINE B4 199 292 0 7 1000 288 246 25 17 chr1 54492310 54492430 -142703002 + L1M5 LINE L1 4183 4303 -1843 7 1000 408 209 170 16 chr1 54492508 54492631 -142702801 - ID_B1 SINE B4 -44 248 104 7 1000 1390 219 61 38 chr1 54493478 54493841 -142701591 - MTD LTR MaLR -14 405 13 7 1000 1129 108 12 0 chr1 54493968 54494134 -142701298 + B2_Mm1t SINE B2 12 179 -14 7 1000 368 80 336 18 chr1 54494159 54494272 -142701160 + B2_Mm2 SINE B2 47 195 0 7 1000 28 0 0 0 chr1 54494333 54494361 -142701071 + AT_rich Low_complexity Low_complexity 1 28 0 7 1000 1104 56 28 0 chr1 54494411 54494554 -142700878 + B1_Mus1 SINE Alu 1 147 -1 7 1000 220 235 0 68 chr1 54495263 54495336 -142700096 + ID4 SINE ID 7 74 -9 7 1000 1178 77 29 120 chr1 54495995 54496203 -142699229 - B2_Mm2 SINE B2 -2 193 5 7 1000 1242 20 7 0 chr1 54496326 54496472 -142698960 - B1_Mus2 SINE Alu 0 147 1 7 1000 417 54 0 0 chr1 54496696 54496752 -142698680 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1000 255 301 88 25 chr1 54497563 54497723 -142697709 + LTR81A LTR ERV1? 27 196 -1154 7 1000 376 295 49 28 chr1 54497969 54497991 -142697441 - ID_B1 SINE B4 -1 223 202 7 1000 630 0 0 0 chr1 54497991 54498061 -142697371 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1000 562 224 71 8 chr1 54498061 54498164 -142697268 - B1_Mur2 SINE Alu -23 126 15 8 1000 376 295 49 28 chr1 54498164 54498181 -142697251 - ID_B1 SINE B4 -23 201 78 7 1000 269 290 45 75 chr1 54498181 54498195 -142697237 - MT2B LTR ERVL -329 272 143 8 1000 263 28 0 27 chr1 54498430 54498467 -142696965 + (AATAG)n Simple_repeat Simple_repeat 3 38 0 8 1000 280 326 42 10 chr1 54499244 54499340 -142696092 - L2a LINE L2 -8 3418 3320 8 1000 202 164 18 18 chr1 54502487 54502543 -142692889 + CT-rich Low_complexity Low_complexity 1 56 0 1 1000 281 243 71 0 chr1 54502544 54502614 -142692818 - BC1_Mm scRNA scRNA -70 82 8 2 1000 362 273 13 0 chr1 54503407 54503484 -142691948 + ID4_ SINE ID 4 81 -2 3 1000 200 247 0 27 chr1 54503514 54503589 -142691843 + GA-rich Low_complexity Low_complexity 1 73 0 4 1000 406 261 0 108 chr1 54504477 54504606 -142690826 + PB1D10 SINE Alu 3 117 0 5 1000 284 313 88 37 chr1 54504707 54504843 -142690589 - B1F SINE Alu 0 149 7 6 1000 333 197 155 0 chr1 54504924 54504995 -142690437 - ID4_ SINE ID 0 83 2 7 1000 326 284 136 10 chr1 54504995 54505098 -142690334 - PB1D10 SINE Alu -1 116 1 8 1000 360 0 0 0 chr1 54505435 54505475 -142689957 + (GA)n Simple_repeat Simple_repeat 2 41 0 9 1000 287 272 99 0 chr1 54506195 54506276 -142689156 - ID_B1 SINE B4 -29 195 107 1 1000 2234 208 128 2 chr1 54506646 54507146 -142688286 + Lx6 LINE L1 6872 7434 -26 1 1000 213 263 156 10 chr1 54507992 54508088 -142687344 - PB1D10 SINE Alu -5 112 3 1 1000 1077 311 50 6 chr1 54508554 54508874 -142686558 + MTE2b LTR MaLR 3 336 -43 1 1000 836 297 40 0 chr1 54508915 54509117 -142686315 - ID_B1 SINE B4 -7 217 8 1 1000 294 219 109 0 chr1 54509390 54509527 -142685905 + ORR1B1-int LTR MaLR 603 754 -755 1 1000 1066 58 14 0 chr1 54509425 54509564 -142685868 + B1_Mm SINE Alu 6 146 -1 1 1000 293 62 62 0 chr1 54509565 54509630 -142685802 + (CAAAA)n Simple_repeat Simple_repeat 1 69 0 1 1000 1539 186 67 3 chr1 54509681 54509993 -142685439 - ORR1D1 LTR MaLR -39 335 4 1 1000 598 273 135 49 chr1 54510082 54510267 -142685165 + B4A SINE B4 11 211 -81 1 1000 378 167 89 13 chr1 54510285 54510364 -142685068 + MYSERV6-int LTR ERVK 8432 8516 -443 2 1000 1829 218 33 47 chr1 54510375 54510891 -142684541 + RLTR20A LTR ERVK 29 537 -4 2 1000 958 157 14 0 chr1 54510902 54511049 -142684383 + MYSERV6-int LTR ERVK 8546 8694 -265 2 1000 592 269 29 32 chr1 54511127 54511373 -142684059 + RLTR15 LTR ERVK 50 294 -65 2 1000 265 246 0 104 chr1 54511440 54511517 -142683915 + B4A SINE B4 206 274 -18 1 1000 314 207 17 0 chr1 54511556 54511614 -142683818 + HAL1-3A_ME LINE L1 1980 2038 -820 2 1000 1284 231 76 65 chr1 54511624 54511868 -142683564 - ORR1D1 LTR MaLR 0 374 129 2 1000 3358 42 34 0 chr1 54511868 54512254 -142683178 - MTB LTR MaLR 0 400 2 2 1000 1284 231 76 65 chr1 54512254 54512379 -142683053 - ORR1D1 LTR MaLR -246 128 1 2 1000 1104 253 128 0 chr1 54512715 54513051 -142682381 - MTE2b LTR MaLR -2 368 1 2 1000 347 256 11 11 chr1 54513605 54513696 -142681736 - MTE-int LTR MaLR -17 1563 1473 2 1000 7580 138 14 5 chr1 54514180 54515435 -142679997 - L1_Mur1 LINE L1 -1513 4373 3107 2 1000 4314 105 38 24 chr1 54515435 54516069 -142679363 + Lx LINE L1 6008 6650 -4 2 1000 2149 112 6 57 chr1 54516091 54516424 -142679008 + ORR1A3 LTR MaLR 3 318 -8 3 1000 1506 80 0 16 chr1 54516501 54516531 -142678901 - B2_Mm1a SINE B2 -5 188 161 3 1000 315 0 0 0 chr1 54516531 54516566 -142678866 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1000 1506 80 0 16 chr1 54516566 54516725 -142678707 - B2_Mm1a SINE B2 -33 160 2 3 1000 239 254 0 17 chr1 54516950 54517010 -142678422 - RMER6B LTR ERVK -31 430 372 3 1000 672 313 73 48 chr1 54517804 54518217 -142677215 + MLT1D LTR MaLR 64 486 -19 3 1000 1761 135 92 50 chr1 54519166 54519199 -142676233 + RMER10B LTR ERVL 1 32 -366 3 1000 3721 27 81 18 chr1 54519199 54519646 -142675786 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1000 1761 135 92 50 chr1 54519646 54519994 -142675438 + RMER10B LTR ERVL 33 398 0 3 1000 357 172 0 0 chr1 54519995 54520053 -142675379 - L1MA4 LINE L1 -60 6240 6183 3 1000 299 269 19 28 chr1 54520063 54520170 -142675262 + CT-rich Low_complexity Low_complexity 5 110 0 3 1000 713 190 56 0 chr1 54520170 54520312 -142675120 - B1_Mur4 SINE Alu 0 150 1 3 1000 725 155 143 40 chr1 54520315 54520490 -142674942 - B2_Mm2 SINE B2 -2 193 1 4 1000 264 264 35 43 chr1 54521169 54521284 -142674148 - L1M2 LINE L1 -403 5894 5781 4 1000 372 252 0 0 chr1 54521292 54521415 -142674017 + (TA)n Simple_repeat Simple_repeat 1 123 0 4 1000 232 237 102 0 chr1 54521766 54521825 -142673607 + MTEa LTR MaLR 301 365 -14 4 1000 271 273 138 62 chr1 54521836 54522128 -142673304 - L1M2 LINE L1 -831 5469 5147 4 1000 22 0 0 0 chr1 54522303 54522325 -142673107 + AT_rich Low_complexity Low_complexity 1 22 0 4 1000 449 241 0 9 chr1 54522437 54522546 -142672886 - L1M5 LINE L1 -2292 3854 3747 4 1000 417 252 105 45 chr1 54523128 54523261 -142672171 + RSINE1 SINE B4 7 147 -18 4 1000 231 36 0 0 chr1 54523266 54523294 -142672138 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1000 3857 23 0 0 chr1 54523335 54523770 -142671662 - L1Md_F2 LINE L1 -358 6224 5790 4 1000 2661 50 3 0 chr1 54523770 54524088 -142671344 + L1Md_F2 LINE L1 6264 6582 0 4 1000 194 265 41 0 chr1 54524712 54524761 -142670671 + MIR SINE MIR 88 138 -124 4 1000 249 229 216 10 chr1 54525093 54525114 -142670318 - PB1D10 SINE Alu 0 117 5 5 1000 308 169 167 14 chr1 54525114 54525186 -142670246 - ID_B1 SINE B4 -56 168 86 5 1001 907 299 50 66 chr1 54526014 54526413 -142669019 + L1_Mur3 LINE L1 4918 5328 -552 5 1001 1303 76 82 0 chr1 54526413 54526584 -142668848 + B2_Mm2 SINE B2 1 185 -10 5 1001 907 300 43 55 chr1 54526584 54526774 -142668658 + L1_Mur3 LINE L1 5329 5532 -768 5 1001 1622 195 101 20 chr1 54526783 54527129 -142668303 + ORR1D1 LTR MaLR 1 374 0 5 1001 3015 213 125 79 chr1 54527133 54528085 -142667347 + ORR1D1-int LTR MaLR 7 1002 -368 5 1001 21 71 0 0 chr1 54528446 54528488 -142666944 + AT_rich Low_complexity Low_complexity 1 42 0 5 1001 548 254 79 0 chr1 54528488 54528614 -142666818 + B1_Mur1 SINE Alu 2 137 -12 5 1001 180 77 0 0 chr1 54528622 54528648 -142666784 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 5 1001 447 19 0 0 chr1 54528648 54528699 -142666733 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1001 307 217 29 0 chr1 54528748 54528817 -142666615 - RSINE1 SINE B4 -86 79 9 5 1001 909 287 4 72 chr1 54528819 54529012 -142666420 - B4A SINE B4 -37 255 74 6 1001 369 0 0 0 chr1 54529012 54529053 -142666379 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1001 909 287 4 72 chr1 54529053 54529122 -142666310 - B4A SINE B4 -219 73 11 6 1001 22 0 0 0 chr1 54531081 54531103 -142664329 + AT_rich Low_complexity Low_complexity 1 22 0 6 1001 1228 282 11 7 chr1 54533964 54534250 -142661182 - B4A SINE B4 -4 288 2 6 1001 282 259 17 0 chr1 54534721 54534779 -142660653 + tRNA-Ala-GCY_ tRNA tRNA 5 63 -12 6 1001 420 235 68 12 chr1 54534840 54534953 -142660479 + B3A SINE B2 1 125 -70 6 1001 222 118 0 0 chr1 54534969 54535003 -142660429 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1001 227 0 0 83 chr1 54537804 54537840 -142657592 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1001 1027 137 0 20 chr1 54537872 54538021 -142657411 - B1_Mur1 SINE Alu -3 146 1 6 1001 222 302 189 0 chr1 54538079 54538185 -142657247 - ID_B1 SINE B4 -1 223 98 6 1001 235 299 221 0 chr1 54539750 54539877 -142655555 + L1M2 LINE L1 2134 2288 -3852 7 1001 612 247 50 79 chr1 54540096 54540298 -142655134 + B3A SINE B2 2 197 -1 7 1001 23 0 0 0 chr1 54540319 54540342 -142655090 + AT_rich Low_complexity Low_complexity 1 23 0 7 1001 3364 31 0 18 chr1 54540397 54540793 -142654639 + L1Md_F2 LINE L1 6040 6428 -154 7 1001 207 0 0 0 chr1 54540793 54540816 -142654616 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1001 956 280 140 22 chr1 54540913 54541512 -142653920 + L1M2 LINE L1 2629 3298 -2845 7 1001 387 310 102 7 chr1 54541705 54541946 -142653486 - L1MA4 LINE L1 -358 5942 5685 7 1001 5739 39 0 0 chr1 54542260 54543102 -142652330 + L1Md_F2 LINE L1 5403 6244 -338 7 1001 501 280 16 0 chr1 54543702 54543827 -142651605 - PB1 SINE Alu 0 127 1 7 1001 2009 130 14 80 chr1 54544010 54544362 -142651070 - ORR1A4 LTR MaLR 0 329 1 7 1001 10943 121 26 94 chr1 54544368 54545762 -142649670 - ORR1A4-int LTR MaLR -31 1932 641 7 1001 1283 61 0 0 chr1 54545762 54545909 -142649523 + B1_Mus2 SINE Alu 1 147 0 7 1001 10943 121 26 94 chr1 54545909 54545924 -142649508 - ORR1A3-int LTR MaLR -1323 640 640 8 1001 189 0 0 0 chr1 54545924 54545945 -142649487 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1001 10943 121 26 94 chr1 54545945 54546607 -142648825 - ORR1A4-int LTR MaLR -1323 640 1 7 1001 1941 140 0 59 chr1 54546611 54546952 -142648480 - ORR1A4 LTR MaLR -8 321 1 7 1001 1038 94 18 48 chr1 54547170 54547338 -142648094 - B2_Mm2 SINE B2 -4 191 29 8 1001 906 196 136 11 chr1 54547412 54547603 -142647829 + B3 SINE B2 1 215 -1 8 1001 1454 60 66 0 chr1 54547724 54547906 -142647526 + B2_Mm2 SINE B2 2 195 0 8 1001 22 35 0 0 chr1 54548147 54548176 -142647256 + AT_rich Low_complexity Low_complexity 1 29 0 8 1001 283 222 125 0 chr1 54549930 54550002 -142645430 - ID4_ SINE ID -1 82 2 8 1001 459 175 12 0 chr1 54550446 54550526 -142644906 - PB1D10 SINE Alu -28 89 9 8 1001 441 0 0 0 chr1 54550553 54550602 -142644830 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1001 324 328 112 0 chr1 54550627 54550743 -142644689 - B4A SINE B4 -48 244 116 8 1001 519 17 0 0 chr1 54550743 54550803 -142644629 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1001 3563 30 5 2 chr1 54550882 54551277 -142644155 - MTA_Mm LTR MaLR 0 396 1 9 1001 1017 236 111 15 chr1 54551994 54552311 -142643121 - L1MB8 LINE L1 -2 6176 5828 9 1001 303 279 0 81 chr1 54552311 54552397 -142643035 - ID4 SINE ID -3 80 2 9 1001 1017 236 111 15 chr1 54552397 54552411 -142643021 - L1MB8 LINE L1 -351 5827 5814 9 1001 510 259 206 14 chr1 54552424 54552647 -142642785 - L1MB8 LINE L1 -465 5719 5454 9 1001 264 320 0 20 chr1 54553486 54553585 -142641847 + G-rich Low_complexity Low_complexity 5 101 0 9 1001 235 254 0 33 chr1 54553983 54554044 -142641388 + CT-rich Low_complexity Low_complexity 2 60 0 9 1001 285 331 45 30 chr1 54554722 54554856 -142640576 - MIRb SINE MIR -17 251 116 9 1001 254 175 0 0 chr1 54555634 54555674 -142639758 + PB1 SINE Alu 32 71 -56 9 1001 202 270 29 128 chr1 54555695 54555797 -142639635 + MIRb SINE MIR 40 131 -137 9 1001 319 291 108 63 chr1 54556081 54556239 -142639193 + MER102b DNA MER1_type 42 206 -135 9 1001 206 284 0 19 chr1 54556612 54556716 -142638716 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 1 1001 2174 317 63 23 chr1 54556717 54557370 -142638062 + Lx8 LINE L1 6177 6850 -623 1 1001 2973 94 26 52 chr1 54557370 54557865 -142637567 + RLTR45 LTR ERVK 1 482 0 1 1001 2174 317 63 23 chr1 54557865 54558318 -142637114 + Lx8 LINE L1 6851 7328 -145 1 1001 412 285 9 101 chr1 54558410 54558666 -142636766 + L1VL1 LINE L1 179 436 -5982 1 1001 401 250 15 8 chr1 54558712 54558845 -142636587 + L1_Mus2 LINE L1 670 803 -5813 1 1001 16185 154 47 54 chr1 54558853 54564707 -142630725 + L1_Mus2 LINE L1 752 6563 -3 1 1001 412 281 103 43 chr1 54564777 54564977 -142630455 + L1_Rod LINE L1 5615 5816 -475 1 1001 261 139 0 0 chr1 54565057 54565100 -142630332 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1001 1508 209 208 5 chr1 54565201 54565624 -142629808 + RLTR18B LTR ERVK 1 509 -3 1 1001 755 142 24 0 chr1 54566381 54566508 -142628924 + B1_Mur4 SINE Alu 20 149 -1 1 1001 193 180 173 39 chr1 54566523 54566575 -142628857 + MIRb SINE MIR 158 216 -52 1 1001 531 196 8 89 chr1 54567400 54567523 -142627909 - B1_Mur1 SINE Alu 0 149 37 1 1001 262 306 42 85 chr1 54569085 54569203 -142626229 - RSINE1 SINE B4 0 165 53 1 1001 211 158 53 0 chr1 54569171 54569209 -142626223 - B4 SINE B4 -209 83 44 1 1001 209 196 0 0 chr1 54569505 54569551 -142625881 + A-rich Low_complexity Low_complexity 6 51 0 1 1001 643 12 0 12 chr1 54570064 54570150 -142625282 - L1Md_T LINE L1 0 6582 6498 1 1001 396 0 0 0 chr1 54570319 54570363 -142625069 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1001 344 281 58 10 chr1 54570391 54570495 -142624937 + L1MC4a LINE L1 6912 7020 -862 1 1001 237 295 41 48 chr1 54570700 54570846 -142624586 + L1MC4a LINE L1 7255 7399 -483 1 1001 423 216 20 102 chr1 54570864 54570962 -142624470 + B3 SINE B2 116 205 -11 1 1001 271 0 51 0 chr1 54571126 54571165 -142624267 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1001 586 175 462 4 chr1 54571256 54571509 -142623923 + ORR1D1 LTR MaLR 5 373 -1 1 1001 1853 87 138 10 chr1 54572511 54572800 -142622632 + ORR1A3 LTR MaLR 1 326 0 1 1001 1533 38 27 0 chr1 54572867 54573053 -142622379 - B2_Mm1t SINE B2 -2 191 1 1 1001 13866 99 55 6 chr1 54573133 54576258 -142619174 - L1VL1 LINE L1 -2156 3727 440 1 1001 21 0 0 0 chr1 54576258 54576279 -142619153 + AT_rich Low_complexity Low_complexity 1 21 0 1 1001 372 243 46 9 chr1 54577500 54577608 -142617824 + MER3 DNA MER1_type 79 190 -19 1 1001 345 241 53 96 chr1 54579926 54580070 -142615362 + B1F1 SINE Alu 15 149 0 1 1001 24 0 0 0 chr1 54580242 54580266 -142615166 + AT_rich Low_complexity Low_complexity 1 24 0 1 1001 1316 95 0 5 chr1 54580434 54580625 -142614807 + B2_Mm2 SINE B2 2 191 -4 1 1001 295 253 57 57 chr1 54580647 54580735 -142614697 - Helitron3Na_Mam RC Helitron -15 471 384 1 1001 251 256 39 110 chr1 54580807 54580961 -142614471 - Helitron3Na_Mam RC Helitron -327 159 17 1 1001 260 336 108 70 chr1 54581480 54581637 -142613795 + RSINE1 SINE B4 1 163 -2 1 1001 275 219 8 42 chr1 54581651 54581770 -142613662 + (CATA)n Simple_repeat Simple_repeat 4 118 0 1 1001 33 0 0 0 chr1 54581771 54581804 -142613628 + AT_rich Low_complexity Low_complexity 1 33 0 1 1001 685 230 14 28 chr1 54581857 54582000 -142613432 + B1F SINE Alu 9 149 0 1 1001 372 227 0 0 chr1 54582009 54582097 -142613335 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1001 207 231 0 0 chr1 54582100 54582139 -142613293 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1001 1145 56 7 0 chr1 54582425 54582568 -142612864 + B1_Mus2 SINE Alu 4 147 0 1 1001 23 33 0 0 chr1 54583645 54583675 -142611757 + AT_rich Low_complexity Low_complexity 1 30 0 1 1001 1746 180 77 20 chr1 54583705 54584056 -142611376 - ORR1D1 LTR MaLR -3 371 1 1 1001 725 281 56 53 chr1 54584146 54584503 -142610929 + ORR1E LTR MaLR 1 358 -1 1 1001 213 225 25 0 chr1 54584761 54584801 -142610631 + PB1 SINE Alu 17 57 -70 1 1001 685 73 42 0 chr1 54585609 54585705 -142609727 + BC1_Mm scRNA scRNA 1 100 -52 1 1001 306 0 0 0 chr1 54585762 54585796 -142609636 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1001 714 204 0 35 chr1 54585796 54585938 -142609494 - B1_Mur1 SINE Alu -12 137 1 1 1001 241 259 81 23 chr1 54586548 54586635 -142608797 + L1MC5 LINE L1 7323 7414 -547 1 1001 196 277 226 0 chr1 54587865 54588020 -142607412 - MIR SINE MIR 0 262 73 1 1001 38 39 0 0 chr1 54589002 54589054 -142606378 + AT_rich Low_complexity Low_complexity 1 52 0 1 1001 332 289 160 37 chr1 54589073 54589317 -142606115 - Lx8 LINE L1 -4 7469 7196 1 1001 1206 106 39 0 chr1 54589608 54589787 -142605645 - B2_Mm2 SINE B2 -8 187 2 1 1001 481 337 40 58 chr1 54591231 54591753 -142603679 + Lx8 LINE L1 6959 7471 -2 1 1001 1696 48 0 0 chr1 54592306 54592515 -142602917 + L1_Mus1 LINE L1 6359 6567 0 1 1001 311 121 17 0 chr1 54592637 54592695 -142602737 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1001 274 198 37 12 chr1 54593323 54593405 -142602027 + L1MA10 LINE L1 6251 6334 0 1 1001 354 406 61 9 chr1 54593875 54594106 -142601326 - MER115 DNA Tip100 -69 624 382 1 1001 384 241 86 50 chr1 54594238 54594378 -142601054 + ID_B1 SINE B4 80 224 0 1 1001 775 0 0 21 chr1 54594592 54594689 -142600743 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1 1001 3987 154 33 19 chr1 54594711 54595406 -142600026 - RMER13B LTR ERVK -203 705 1 1 1001 662 35 12 0 chr1 54595408 54595493 -142599939 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1001 2091 316 46 18 chr1 54595753 54596783 -142598649 + Lx8 LINE L1 6377 7434 -39 1 1001 250 250 0 0 chr1 54596787 54596855 -142598577 + A-rich Low_complexity Low_complexity 1 68 0 1 1001 301 312 62 15 chr1 54597176 54597306 -142598126 + Helitron3Na_Mam RC Helitron 246 381 -105 1 1001 3997 208 27 73 chr1 54597340 54597575 -142597857 + MYSERV-int LTR ERVK 811 967 -1359 1 1001 312 27 0 0 chr1 54597575 54597612 -142597820 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1001 4096 220 55 50 chr1 54597612 54597992 -142597440 + MYSERV-int LTR ERVK 5391 5516 -1034 1 1001 1300 62 62 6 chr1 54597992 54598171 -142597261 + B2_Mm2 SINE B2 2 190 -5 1 1001 4096 190 73 40 chr1 54598171 54599109 -142596323 + MYSERV-int LTR ERVK 5517 6498 -52 1 1001 1310 105 16 0 chr1 54599109 54599299 -142596133 - B2_Mm2 SINE B2 -2 193 1 1 1001 4096 190 73 40 chr1 54599299 54599352 -142596080 + MYSERV-int LTR ERVK 6499 6548 -2 1 1001 2625 71 15 43 chr1 54599353 54599750 -142595682 + RLTR11B LTR ERVK 1 386 -67 1 1001 226 0 59 0 chr1 54599767 54599801 -142595631 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1001 22 35 0 0 chr1 54600369 54600398 -142595034 + AT_rich Low_complexity Low_complexity 1 29 0 1 1001 2217 196 33 17 chr1 54600418 54600970 -142594462 + Lx4B LINE L1 6494 7056 -2 1 1001 22 0 0 0 chr1 54600970 54600992 -142594440 + AT_rich Low_complexity Low_complexity 1 22 0 1 1001 889 218 40 20 chr1 54601199 54601400 -142594032 + B3 SINE B2 3 207 -9 1 1001 527 211 59 22 chr1 54601438 54601574 -142593858 + B1_Mur1 SINE Alu 9 149 0 1 1001 1085 338 72 27 chr1 54601675 54601775 -142593657 + MER68 LTR ERVL 26 127 -436 1 1001 1112 160 97 0 chr1 54601775 54601981 -142593451 + URR1A DNA MER1_type 1 226 0 1 1001 1085 338 72 27 chr1 54601981 54602391 -142593041 + MER68 LTR ERVL 128 558 -5 1 1001 180 214 0 0 chr1 54602527 54602583 -142592849 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1001 288 0 0 0 chr1 54602693 54602725 -142592707 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1001 276 264 66 117 chr1 54602817 54602954 -142592478 + L2a LINE L2 2486 2615 -804 1 1001 231 274 60 34 chr1 54603165 54603282 -142592150 - L1M3 LINE L1 -2340 3800 3681 1 1001 410 270 96 115 chr1 54603335 54603542 -142591890 - L1M5 LINE L1 -2458 3688 3490 1 1001 1153 88 0 0 chr1 54603542 54603689 -142591743 + B1_Mus2 SINE Alu 1 147 0 1 1001 410 270 96 115 chr1 54603689 54604271 -142591161 - L1M5 LINE L1 -2657 3489 2914 1 1001 430 352 99 75 chr1 54604315 54604690 -142590742 - L1M5 LINE L1 -3316 2830 2447 1 1001 770 246 105 5 chr1 54605106 54605306 -142590126 + B4A SINE B4 5 224 -68 1 1001 804 262 66 33 chr1 54605471 54605803 -142589629 - L1MB8 LINE L1 -19 6159 5817 1 1001 366 227 144 38 chr1 54605801 54605961 -142589471 - L1MB8 LINE L1 -631 5553 5377 1 1001 432 0 0 0 chr1 54606498 54606546 -142588886 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1001 414 0 0 0 chr1 54606765 54606811 -142588621 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1001 279 79 0 0 chr1 54606823 54606861 -142588571 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 1 1001 304 332 132 63 chr1 54606925 54607227 -142588205 + L2a LINE L2 3102 3424 -2 1 1001 252 0 0 0 chr1 54607981 54608009 -142587423 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1001 480 156 0 0 chr1 54608485 54608575 -142586857 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1001 844 231 112 26 chr1 54608585 54608852 -142586580 - B4A SINE B4 -2 290 1 1 1001 327 240 49 20 chr1 54609130 54609232 -142586200 - PB1D10 SINE Alu -9 108 4 1 1001 594 136 71 18 chr1 54609859 54609971 -142585461 + PB1D9 SINE Alu 3 120 0 1 1001 198 103 0 0 chr1 54609976 54610005 -142585427 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1001 21 36 0 0 chr1 54610084 54610112 -142585320 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 211 232 0 35 chr1 54610144 54610202 -142585230 + GA-rich Low_complexity Low_complexity 4 59 0 1 1001 333 109 0 0 chr1 54610604 54610659 -142584773 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1001 258 70 0 0 chr1 54611387 54611430 -142584002 - Lx2A LINE L1 -4 7004 6962 1 1001 626 200 53 15 chr1 54611450 54611582 -142583850 - B3A SINE B2 -48 150 14 1 1001 828 80 50 28 chr1 54612191 54612332 -142583100 - L1_Mus3 LINE L1 -2 6636 6493 1 1001 262 244 11 34 chr1 54614669 54614786 -142580646 + GA-rich Low_complexity Low_complexity 1 114 0 1 1001 21 36 0 0 chr1 54615179 54615207 -142580225 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 396 103 0 0 chr1 54615510 54615568 -142579864 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1001 1166 261 123 12 chr1 54616024 54616357 -142579075 - MTE2b LTR MaLR -6 373 4 1 1001 2113 276 118 32 chr1 54616363 54617260 -142578172 - MTE2b-int LTR MaLR -56 1907 476 1 1001 705 126 0 0 chr1 54617260 54617371 -142578061 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 1 1001 543 241 0 17 chr1 54617384 54617502 -142577930 - MTE2b-int LTR MaLR -1113 467 352 1 1001 216 0 0 0 chr1 54617508 54617532 -142577900 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1001 625 252 8 0 chr1 54617581 54617708 -142577724 - B1_Mur1 SINE Alu -21 128 1 2 1001 1444 263 18 3 chr1 54617710 54618053 -142577379 - MTE2b-int LTR MaLR -1232 348 1 1 1001 978 229 213 16 chr1 54618053 54618368 -142577064 - MTE2b LTR MaLR 0 379 3 1 1001 860 233 68 19 chr1 54618760 54618966 -142576466 - B3 SINE B2 0 216 1 2 1001 266 313 203 15 chr1 54618976 54619109 -142576323 - MER5A1 DNA MER1_type -8 158 1 2 1001 227 303 105 0 chr1 54619235 54619311 -142576121 + B4A SINE B4 84 167 -125 2 1001 406 226 25 10 chr1 54619254 54619353 -142576079 + PB1D10 SINE Alu 23 118 -31 2 1001 271 185 0 0 chr1 54619397 54619451 -142575981 - ID_B1 SINE B4 0 224 171 2 1001 865 209 88 10 chr1 54620582 54620775 -142574657 + B3 SINE B2 3 210 -6 2 1001 2709 228 148 20 chr1 54620943 54621672 -142573760 + RCHARR1 DNA MER1_type 1 825 -149 2 1001 369 109 0 0 chr1 54621672 54621727 -142573705 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1001 2709 228 148 20 chr1 54621727 54621860 -142573572 + RCHARR1 DNA MER1_type 826 973 -1 2 1001 421 238 334 6 chr1 54622007 54622153 -142573279 + RMER30 DNA MER1_type 7 200 -2 2 1001 518 259 8 33 chr1 54622506 54622626 -142572806 - RSINE1 SINE B4 -36 129 13 2 1001 316 206 13 40 chr1 54622770 54622846 -142572586 + RLTR25B LTR ERVK 424 497 -531 2 1001 806 47 0 18 chr1 54622789 54622898 -142572534 + B1_Mus2 SINE Alu 41 147 0 2 1001 2264 165 25 76 chr1 54622948 54623420 -142572012 - RLTR31A_Mm LTR ERVK -136 448 1 2 1001 256 159 138 31 chr1 54623483 54623548 -142571884 - L1MC LINE L1 -789 5544 5473 2 1001 1142 90 19 0 chr1 54624534 54624689 -142570743 - B2_Mm2 SINE B2 -13 182 25 2 1001 928 276 19 0 chr1 54624962 54625172 -142570260 - B3 SINE B2 0 216 3 2 1001 26 0 0 0 chr1 54625652 54625678 -142569754 + AT_rich Low_complexity Low_complexity 1 26 0 2 1001 21 36 0 0 chr1 54626529 54626557 -142568875 + AT_rich Low_complexity Low_complexity 1 28 0 2 1001 228 307 106 0 chr1 54626565 54626649 -142568783 + ID4 SINE ID 2 96 -56 2 1001 236 276 0 17 chr1 54626912 54626923 -142568509 - MTE2a LTR MaLR -34 345 335 2 1001 306 0 0 0 chr1 54626923 54626957 -142568475 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 2 1001 236 276 0 17 chr1 54626957 54626996 -142568436 - MTE2a LTR MaLR -45 334 297 2 1001 1506 227 35 83 chr1 54626996 54627582 -142567850 + RLTR20B3 LTR ERVK 3 528 0 2 1001 307 227 93 0 chr1 54627582 54627655 -142567777 - MTE2a LTR MaLR -96 283 204 2 1001 829 230 59 10 chr1 54627658 54627860 -142567572 + B3 SINE B2 1 212 -4 2 1001 275 316 78 62 chr1 54627882 54628125 -142567307 - MTD LTR MaLR -165 254 8 2 1001 328 368 33 71 chr1 54628213 54628329 -142567103 - L1MEe LINE L1 -4462 1687 1571 2 1001 1134 254 44 71 chr1 54628329 54628625 -142566807 + B4A SINE B4 2 289 -3 2 1001 328 368 33 71 chr1 54628625 54628637 -142566795 - L1MEe LINE L1 -4579 1570 1559 2 1001 234 0 0 0 chr1 54628637 54628663 -142566769 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1001 328 348 153 55 chr1 54628663 54629171 -142566261 - L1MEe LINE L1 -4591 1558 1005 2 1001 4854 287 72 43 chr1 54629241 54629591 -142565841 - Lx8 LINE L1 0 7473 7114 2 1001 1203 62 7 7 chr1 54629591 54629736 -142565696 - B1_Mus2 SINE Alu 0 147 3 2 1001 4854 287 72 43 chr1 54629736 54631172 -142564260 - Lx8 LINE L1 -360 7113 5635 2 1001 1169 265 58 33 chr1 54631173 54631346 -142564086 + L1_Mur3 LINE L1 5171 5355 -525 2 1001 666 78 17 9 chr1 54631346 54631462 -142563970 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 1001 1169 265 58 33 chr1 54631462 54631686 -142563746 + L1_Mur3 LINE L1 5356 5577 -303 2 1001 251 341 24 0 chr1 54631697 54631782 -142563650 - PB1D10 SINE Alu -30 87 1 2 1001 1309 106 26 26 chr1 54631792 54631830 -142563602 - B2_Mm2 SINE B2 -1 194 156 2 1001 360 43 0 0 chr1 54631830 54631876 -142563556 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2 1001 1309 106 26 26 chr1 54631876 54632031 -142563401 - B2_Mm2 SINE B2 -40 155 1 2 1001 322 265 307 6 chr1 54632123 54632286 -142563146 + ID_B1 SINE B4 2 213 -11 2 1001 379 242 95 102 chr1 54632593 54632740 -142562692 - RSINE1 SINE B4 -19 146 1 2 1001 1037 268 25 28 chr1 54633746 54634030 -142561402 + B4A SINE B4 10 292 0 2 1001 501 313 147 10 chr1 54634798 54634995 -142560437 - ID_B1 SINE B4 0 224 1 2 1001 27 49 0 0 chr1 54635434 54635475 -142559957 + AT_rich Low_complexity Low_complexity 1 41 0 2 1001 1090 79 26 0 chr1 54636612 54636764 -142558668 - ORR1A4 LTR MaLR -52 277 122 2 1001 566 339 27 22 chr1 54637184 54637407 -142558025 - MER58A DNA MER1_type 0 224 1 2 1001 2080 179 172 17 chr1 54637800 54638043 -142557389 + RLTR20B3 LTR ERVK 1 288 -289 2 1001 4564 47 2 8 chr1 54638043 54638558 -142556874 - LTRIS3 LTR ERV1 0 512 1 2 1001 2080 179 172 17 chr1 54638558 54638796 -142556636 + RLTR20B3 LTR ERVK 289 557 -20 2 1001 350 269 133 69 chr1 54639117 54639305 -142556127 + MIRb SINE MIR 63 262 -6 2 1001 216 0 0 0 chr1 54639334 54639358 -142556074 + (CCA)n Simple_repeat Simple_repeat 3 26 0 2 1001 688 256 73 28 chr1 54639384 54639561 -142555871 + B4 SINE B4 108 292 0 2 1001 510 321 0 0 chr1 54639561 54639729 -142555703 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 2 1001 3163 129 117 6 chr1 54640100 54640630 -142554802 - RLTR1D LTR ERV1 -16 589 1 2 1001 1639 114 18 125 chr1 54640631 54640837 -142554595 + RMER17C LTR ERVK 25 187 -223 2 1001 890 0 19 0 chr1 54640837 54640942 -142554490 + (TTCTC)n Simple_repeat Simple_repeat 3 109 0 2 1001 1639 114 18 125 chr1 54640942 54641135 -142554297 + RMER17C LTR ERVK 188 381 -29 2 1001 905 57 16 0 chr1 54641140 54641263 -142554169 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 2 1001 378 0 0 0 chr1 54641590 54641632 -142553800 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1001 325 197 188 8 chr1 54642401 54642534 -142552898 + L1MB3 LINE L1 5818 5974 -209 2 1001 553 204 150 34 chr1 54642679 54642796 -142552636 - RMER1B Other Other -13 1053 941 2 1001 630 0 0 0 chr1 54642796 54642866 -142552566 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1001 553 146 532 12 chr1 54642866 54642935 -142552497 - RMER1B Other Other -126 940 817 2 1001 565 227 42 65 chr1 54643187 54643404 -142552028 + L1MB3 LINE L1 5963 6174 -9 2 1001 200 59 29 0 chr1 54643439 54643473 -142551959 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1001 1215 44 0 0 chr1 54643473 54643610 -142551822 - B1_Mus2 SINE Alu -9 138 2 2 1001 746 241 63 42 chr1 54644209 54644400 -142551032 - RMER30 DNA MER1_type -6 196 2 2 1001 220 258 21 73 chr1 54644680 54644776 -142550656 + MIRb SINE MIR 62 152 -116 2 1001 2576 178 53 26 chr1 54644778 54645286 -142550146 - RLTR11A LTR ERVK 0 528 7 2 1001 246 263 184 94 chr1 54646846 54647102 -142548330 + L1ME3B LINE L1 101 379 -6021 2 1001 581 194 68 61 chr1 54647230 54647415 -142548017 + L1MA10 LINE L1 6128 6332 -2 2 1001 602 270 24 8 chr1 54647425 54647552 -142547880 + RSINE1 SINE B4 2 130 -35 2 1001 8619 50 0 2 chr1 54647552 54648630 -142546802 - L1_Mm LINE L1 -2800 3083 2008 2 1001 357 264 153 16 chr1 54648851 54649040 -142546392 + L1ME3B LINE L1 4078 4292 -2027 2 1001 251 271 66 53 chr1 54649265 54649417 -142546015 + L1MC LINE L1 4393 4546 -1600 2 1001 449 304 139 30 chr1 54649459 54649791 -142545641 + L1ME3B LINE L1 5577 5944 -469 2 1001 434 263 103 41 chr1 54649878 54650187 -142545245 - MTD LTR MaLR -23 396 6 2 1001 2253 103 21 25 chr1 54650266 54650593 -142544839 + ORR1A3 LTR MaLR 1 326 0 2 1001 287 271 61 61 chr1 54650651 54650765 -142544667 + L1ME3B LINE L1 6249 6362 -51 2 1001 1075 71 55 41 chr1 54650961 54650974 -142544458 - B1_Mus1 SINE Alu 0 148 141 2 1001 564 15 0 0 chr1 54650974 54651039 -142544393 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1001 1075 71 55 41 chr1 54651039 54651171 -142544261 - B1_Mus1 SINE Alu -8 140 1 2 1001 498 354 93 17 chr1 54651172 54651528 -142543904 - LTR16E1 LTR ERVL -8 530 148 2 1001 21 57 0 0 chr1 54651611 54651646 -142543786 + AT_rich Low_complexity Low_complexity 1 35 0 2 1001 2130 185 47 34 chr1 54651731 54652139 -142543293 - MTC LTR MaLR -8 413 1 2 1001 387 282 164 20 chr1 54652139 54652291 -142543141 - Lx5 LINE L1 -311 6739 6566 2 1001 2253 145 39 61 chr1 54652292 54652732 -142542700 - RLTR23 LTR ERV1 0 430 1 2 1001 286 254 0 0 chr1 54652732 54652795 -142542637 - Lx5 LINE L1 -482 6568 6506 2 1001 925 259 8 16 chr1 54652824 54653067 -142542365 + Lx6 LINE L1 7190 7430 -30 2 1001 1178 243 98 0 chr1 54653459 54653714 -142541718 - B4A SINE B4 -6 286 7 2 1001 408 300 0 0 chr1 54654373 54654463 -142540969 + 5S rRNA rRNA 1 90 -31 2 1001 225 250 39 0 chr1 54654998 54655050 -142540382 - MamRep1161 DNA TcMar -903 54 1 2 1001 22 35 0 0 chr1 54655679 54655708 -142539724 + AT_rich Low_complexity Low_complexity 1 29 0 2 1001 228 273 26 13 chr1 54656442 54656520 -142538912 + MTEb LTR MaLR 287 365 -14 2 125 2022 133 126 11 chr1 54656860 54657294 -142538138 + RMER6A LTR ERVK 306 756 0 2 1002 6643 49 2 75 chr1 54657767 54658633 -142536799 + RLTR13B4 LTR ERVK 1 803 0 2 1002 2574 174 12 30 chr1 54659488 54659992 -142535440 + Lx4B LINE L1 6562 7056 -2 2 1002 22 0 0 0 chr1 54659992 54660014 -142535418 + AT_rich Low_complexity Low_complexity 1 22 0 2 1002 957 223 40 20 chr1 54660221 54660422 -142535010 + B3 SINE B2 3 207 -9 2 1002 570 203 58 29 chr1 54660460 54660597 -142534835 + B1_Mur1 SINE Alu 9 149 0 2 1002 237 355 11 0 chr1 54660698 54660791 -142534641 + MER68 LTR ERVL 26 119 -444 2 1002 1279 164 87 0 chr1 54660798 54661006 -142534426 + URR1A DNA MER1_type 1 226 0 2 1002 794 239 45 6 chr1 54661180 54661357 -142534075 + ORR1D1 LTR MaLR 14 197 -177 2 1002 5312 161 37 8 chr1 54661581 54662507 -142532925 + RMER17B LTR ERVK 1 953 -5 2 1002 1546 308 62 47 chr1 54662626 54663567 -142531865 + MuRRS4-int LTR ERV1 1050 2072 -5484 2 1002 4252 177 134 24 chr1 54663670 54663702 -142531730 + ORR1D1-int LTR MaLR 344 376 -994 2 1002 396 0 0 0 chr1 54663702 54663746 -142531686 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1002 4252 177 134 24 chr1 54663746 54664638 -142530794 + ORR1D1-int LTR MaLR 377 1369 -1 2 1002 1898 184 69 6 chr1 54664638 54664988 -142530444 + ORR1D1 LTR MaLR 1 372 -2 2 1002 273 197 49 0 chr1 54664990 54665051 -142530381 - ID_B1 SINE B4 -37 187 124 2 1002 561 233 18 70 chr1 54665057 54665228 -142530204 - Lx6 LINE L1 -27 7433 7272 2 1002 306 0 0 0 chr1 54666024 54666058 -142529374 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1002 271 253 202 6 chr1 54666217 54666380 -142529052 + L1M5 LINE L1 5644 5838 -286 2 1002 350 193 193 0 chr1 54666385 54666468 -142528964 + PB1D10 SINE Alu 13 111 -6 2 1002 4175 49 111 16 chr1 54666491 54667006 -142528426 - LTRIS2 LTR ERV1 0 564 1 2 1002 304 292 14 0 chr1 54667083 54667155 -142528277 - B4 SINE B4 -4 288 216 3 1002 482 259 6 0 chr1 54667160 54667330 -142528102 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1002 427 236 61 98 chr1 54667331 54667495 -142527937 - RSINE1 SINE B4 0 165 8 3 1002 820 181 72 0 chr1 54667505 54667643 -142527789 - B1_Mur3 SINE Alu 0 149 2 3 1002 441 156 0 0 chr1 54667721 54667798 -142527634 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1002 726 226 94 0 chr1 54668252 54668411 -142527021 + B3 SINE B2 11 184 -32 3 1002 838 248 112 4 chr1 54668999 54669258 -142526174 - MTEa LTR MaLR -3 376 90 3 1002 1532 172 212 23 chr1 54669904 54670086 -142525346 + RMER17C LTR ERVK 1 183 -227 3 1002 556 38 0 25 chr1 54670086 54670167 -142525265 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1002 1532 172 212 23 chr1 54670167 54670329 -142525103 + RMER17C LTR ERVK 184 409 -1 3 1002 542 212 73 27 chr1 54670957 54671107 -142524325 - Charlie1 DNA MER1_type -7 2774 2618 3 1002 319 296 110 92 chr1 54671113 54671385 -142524047 + B4 SINE B4 3 279 -13 3 1002 1786 227 19 47 chr1 54671433 54671863 -142523569 - MTD LTR MaLR -1 418 1 3 1002 393 327 147 30 chr1 54671883 54672397 -142523035 - Charlie1 DNA MER1_type -849 1932 1768 3 1002 207 152 0 0 chr1 54672548 54672594 -142522838 + A-rich Low_complexity Low_complexity 2 47 0 3 1002 920 209 108 20 chr1 54672826 54673021 -142522411 - B3 SINE B2 -4 212 1 3 1002 639 248 20 20 chr1 54673074 54673222 -142522210 + B1F1 SINE Alu 2 149 0 3 1002 192 152 0 0 chr1 54673693 54673726 -142521706 + (ATG)n Simple_repeat Simple_repeat 3 35 0 3 1002 2162 94 3 81 chr1 54674298 54674358 -142521074 - ORR1A2 LTR MaLR -8 319 287 3 1002 869 124 93 0 chr1 54674358 54674487 -142520945 - B1_Mus1 SINE Alu -7 141 1 3 1002 2162 94 3 81 chr1 54674487 54674772 -142520660 - ORR1A2 LTR MaLR -41 286 1 3 1002 242 241 124 22 chr1 54674772 54674861 -142520571 + Lx8 LINE L1 6997 7094 -379 3 1002 1288 288 187 83 chr1 54675048 54675803 -142519629 + RMER13A LTR ERVK 1 840 -20 3 1002 3332 8 0 76 chr1 54675803 54676200 -142519232 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1002 384 344 72 117 chr1 54676200 54676227 -142519205 + RMER13A LTR ERVK 841 860 0 3 1002 359 329 0 27 chr1 54676679 54676819 -142518613 - PB1D7 SINE Alu -1 148 13 3 1002 343 264 43 78 chr1 54676846 54676961 -142518471 - Charlie1 DNA MER1_type -1188 1593 1483 3 1002 24 0 0 0 chr1 54677046 54677070 -142518362 + AT_rich Low_complexity Low_complexity 1 24 0 3 1002 2287 244 18 11 chr1 54677448 54677950 -142517482 - Lx6 LINE L1 -136 7560 6796 3 1002 17795 137 118 86 chr1 54677955 54678154 -142517278 - L1_Mur3 LINE L1 -365 5515 5318 3 1002 1305 54 0 0 chr1 54678154 54678302 -142517130 + B1_Mus1 SINE Alu 1 148 0 3 1002 17795 137 118 86 chr1 54678302 54679132 -142516300 - L1_Mur3 LINE L1 -563 5317 4415 3 1002 320 87 0 0 chr1 54679132 54679178 -142516254 + ORR1A4 LTR MaLR 1 46 -283 3 1002 17795 137 118 86 chr1 54679178 54679191 -142516241 - L1_Mur3 LINE L1 -563 4414 4399 3 1002 189 0 0 0 chr1 54679191 54679212 -142516220 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 1002 359 99 97 14 chr1 54679219 54679291 -142516141 - B1_Mm SINE Alu 0 147 70 3 1002 721 177 81 7 chr1 54679265 54679413 -142516019 + ORR1B1 LTR MaLR 66 224 -170 3 1002 17795 144 120 71 chr1 54679413 54683102 -142512330 - L1_Mur3 LINE L1 -1482 4391 296 3 1002 36 0 0 0 chr1 54686598 54686634 -142508798 + AT_rich Low_complexity Low_complexity 1 36 0 3 1002 3724 101 51 12 chr1 54686644 54687156 -142508276 - Lx3B LINE L1 -4 6969 6438 3 1002 624 14 0 0 chr1 54687264 54687337 -142508095 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 1002 6004 3 0 0 chr1 54687486 54688109 -142507323 - L1Md_A LINE L1 0 6582 5960 3 1002 21 0 0 0 chr1 54688175 54688196 -142507236 + AT_rich Low_complexity Low_complexity 1 21 0 3 1002 20038 69 16 3 chr1 54688612 54691915 -142503517 + L1VL4 LINE L1 216 3559 0 3 1002 228 301 50 88 chr1 54691921 54692001 -142503431 + MER115 DNA Tip100 187 263 -430 3 1002 307 257 88 0 chr1 54692179 54692292 -142503140 + L1MB7 LINE L1 3621 3743 -2403 3 1002 1180 275 100 41 chr1 54692289 54692619 -142502813 + L1MB7 LINE L1 5651 6033 -151 3 1002 6482 145 58 9 chr1 54692619 54693643 -142501789 - Lx5 LINE L1 -1 7049 5976 3 1002 1180 273 98 43 chr1 54693643 54693805 -142501627 + L1MB7 LINE L1 6034 6184 0 3 1002 207 0 0 0 chr1 54693810 54693833 -142501599 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1002 639 271 7 14 chr1 54693838 54693984 -142501448 - RSINE1 SINE B4 -18 147 3 3 1002 7968 63 5 13 chr1 54694606 54695868 -142499564 - L1_Mus2 LINE L1 0 6654 5345 3 1002 382 305 28 7 chr1 54696656 54696798 -142498634 + LFSINE_Vert SINE SINE 132 276 -183 3 1002 26 0 0 0 chr1 54697548 54697574 -142497858 + AT_rich Low_complexity Low_complexity 1 26 0 3 1002 1076 275 31 35 chr1 54697627 54697669 -142497763 - B4A SINE B4 -7 285 244 3 1002 474 18 0 0 chr1 54697669 54697724 -142497708 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 3 1002 1076 275 31 35 chr1 54697724 54697967 -142497465 - B4A SINE B4 -49 243 1 3 1002 284 314 142 32 chr1 54698056 54698309 -142497123 + L2 LINE L2 995 1275 -2144 3 1002 560 184 9 52 chr1 54698829 54698944 -142496488 + PB1D10 SINE Alu 2 111 -6 3 1002 200 114 0 28 chr1 54698945 54698981 -142496451 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 3 1002 613 302 86 74 chr1 54700751 54701215 -142494217 + MLT1F2 LTR MaLR 24 558 -2 3 1002 202 257 171 14 chr1 54701368 54701514 -142493918 + MIR3 SINE MIR 2 170 -38 3 1002 279 333 149 8 chr1 54701797 54701918 -142493514 + L4 LINE RTE 1729 1866 -163 3 1002 264 122 0 0 chr1 54703481 54703522 -142491910 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 3 1002 296 165 0 34 chr1 54704602 54704721 -142490711 + GA-rich Low_complexity Low_complexity 2 116 0 3 1002 225 83 0 0 chr1 54708816 54708852 -142486580 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 3 1002 251 269 0 43 chr1 54709322 54709392 -142486040 + Lx8 LINE L1 7024 7090 -383 3 1002 21 0 0 0 chr1 54709641 54709662 -142485770 + AT_rich Low_complexity Low_complexity 1 21 0 3 1002 1260 258 158 39 chr1 54710042 54710530 -142484902 + Lx8 LINE L1 6926 7471 -2 3 1002 369 62 0 0 chr1 54711401 54711449 -142483983 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1002 477 0 0 0 chr1 54711449 54711501 -142483931 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1002 1007 177 125 17 chr1 54711505 54711748 -142483684 + RLTR11A LTR ERVK 258 560 -17 3 1002 1297 78 78 0 chr1 54712886 54713065 -142482367 - B2_Mm2 SINE B2 -1 194 2 3 1002 358 325 60 21 chr1 54713261 54713494 -142481938 + L1MC4a LINE L1 5613 5854 -2028 3 1002 3672 23 2 0 chr1 54713735 54714130 -142481302 + MTA_Mm LTR MaLR 1 396 0 3 1002 461 169 39 0 chr1 54714199 54714276 -142481156 + B1F SINE Alu 53 132 -17 3 1002 342 230 81 0 chr1 54714285 54714359 -142481073 + ID4_ SINE ID 2 81 -2 3 1002 1159 225 14 0 chr1 54714851 54715064 -142480368 - B3 SINE B2 0 216 1 3 1002 286 159 14 14 chr1 54715298 54715368 -142480064 + GA-rich Low_complexity Low_complexity 3 72 0 3 1002 265 259 0 47 chr1 54716968 54717053 -142478379 + L1MC LINE L1 5694 5774 -2108 3 1002 226 291 0 0 chr1 54717066 54717121 -142478311 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1002 234 263 52 21 chr1 54717479 54717576 -142477856 + Charlie19a DNA Charlie 135 234 -152 3 1002 200 341 124 11 chr1 54718243 54718421 -142477011 + MIRb SINE MIR 7 204 -64 3 1002 284 216 96 35 chr1 54719149 54719264 -142476168 + L1ME4a LINE L1 5997 6118 -6 3 1002 275 0 0 28 chr1 54719651 54719687 -142475745 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1002 1229 62 7 0 chr1 54720287 54720433 -142474999 + B1_Mus2 SINE Alu 1 147 0 3 1002 186 43 0 0 chr1 54720433 54720456 -142474976 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 3 1002 543 56 0 0 chr1 54721203 54721274 -142474158 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1002 240 111 0 0 chr1 54723084 54723129 -142472303 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1002 541 289 25 13 chr1 54723495 54723653 -142471779 - RSINE1 SINE B4 0 165 6 3 1002 335 368 31 25 chr1 54724890 54725049 -142470383 + MIRb SINE MIR 83 242 -26 3 1002 25557 116 14 21 chr1 54725951 54730713 -142464719 + L1VL1 LINE L1 409 5142 -741 3 1002 4708 122 28 21 chr1 54730709 54731538 -142463894 + L1_Mus3 LINE L1 5728 6629 -9 3 1002 285 230 274 18 chr1 54731755 54731919 -142463513 + L2a LINE L2 2324 2529 -890 3 1002 184 273 129 52 chr1 54732520 54732636 -142462796 + L2a LINE L2 3032 3156 -270 3 1002 351 0 0 0 chr1 54732818 54732857 -142462575 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1002 344 330 43 0 chr1 54732858 54732952 -142462480 - PB1D10 SINE Alu -14 103 6 3 1002 339 261 45 9 chr1 54734379 54734491 -142460941 - Lx7 LINE L1 -16 7680 7565 3 1002 284 268 0 58 chr1 54734621 54734708 -142460724 - Lx7 LINE L1 -451 7245 7164 3 1002 22 0 0 0 chr1 54734753 54734775 -142460657 + AT_rich Low_complexity Low_complexity 1 22 0 3 1002 989 141 124 0 chr1 54735228 54735413 -142460019 - URR1A DNA MER1_type -18 208 1 3 1002 265 344 128 36 chr1 54735524 54735847 -142459585 + L2a LINE L2 2813 3261 -165 3 1002 296 369 57 0 chr1 54736010 54736186 -142459246 - MIR SINE MIR -16 246 61 3 1002 432 281 93 22 chr1 54737664 54737846 -142457586 - MIR SINE MIR -60 202 8 3 1002 283 298 247 9 chr1 54738863 54739090 -142456342 - L2a LINE L2 0 3426 3146 3 1002 444 276 19 28 chr1 54739957 54740065 -142455367 - PB1D9 SINE Alu -12 108 2 3 1002 1583 188 102 25 chr1 54740390 54740751 -142454681 + MTD LTR MaLR 8 396 -23 3 1002 486 325 86 27 chr1 54741766 54741987 -142453445 - B4A SINE B4 -19 273 40 3 1002 183 276 276 0 chr1 54742352 54742428 -142453004 - L2b LINE L2 -4 3371 3275 3 1002 1199 159 34 0 chr1 54742648 54742855 -142452577 - URR1B DNA MER1_type 0 225 12 3 1002 5987 81 26 5 chr1 54743881 54744659 -142450773 + L1_Mus3 LINE L1 5838 6631 -7 3 1002 414 0 0 0 chr1 54744665 54744711 -142450721 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1002 225 0 0 0 chr1 54745183 54745208 -142450224 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1002 390 21 0 0 chr1 54746290 54746337 -142449095 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1002 396 0 0 0 chr1 54746337 54746381 -142449051 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1002 498 322 27 22 chr1 54746469 54746653 -142448779 + MYSERV-int LTR ERVK 4938 5122 -1428 4 1002 611 271 43 38 chr1 54746657 54746841 -142448591 + RMER4A LTR ERVK 251 435 -31 4 1002 1558 156 66 38 chr1 54746859 54747206 -142448226 + MYSERV6-int LTR ERVK 7768 8124 -835 4 1002 552 42 0 0 chr1 54748055 54748126 -142447306 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1002 1134 266 88 17 chr1 54748389 54748741 -142446691 - MTEa LTR MaLR 0 379 3 4 1002 411 21 0 0 chr1 54749201 54749249 -142446183 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1002 221 160 78 20 chr1 54749402 54749453 -142445979 - ID4_ SINE ID -25 58 5 4 1002 576 252 77 120 chr1 54749548 54749873 -142445559 + LTR37B LTR ERV1 155 465 -3 4 1002 510 70 0 0 chr1 54749935 54750006 -142445426 + (TATG)n Simple_repeat Simple_repeat 1 71 0 4 1002 553 264 39 11 chr1 54750010 54750171 -142445261 - B3 SINE B2 -27 189 33 4 1002 5069 64 5 37 chr1 54750183 54750833 -142444599 - L1_Mus2 LINE L1 -6 6560 5932 4 1002 2513 42 3 25 chr1 54750847 54751209 -142444223 + L1_Mus2 LINE L1 5587 5911 -671 4 1002 260 157 7 20 chr1 54751209 54751269 -142444163 - B3A SINE B2 -134 61 1 4 1002 303 279 0 0 chr1 54751678 54751746 -142443686 + RMER30 DNA MER1_type 133 200 -2 4 1002 495 0 0 0 chr1 54752613 54752668 -142442764 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 4 1002 1603 168 48 19 chr1 54752956 54753266 -142442166 - ORR1C2 LTR MaLR 0 384 66 4 1002 1058 84 14 0 chr1 54753347 54753490 -142441942 + L1_Mm LINE L1 4724 4868 -1015 4 1002 777 92 101 0 chr1 54753490 54753609 -142441823 + B1_Mus1 SINE Alu 18 148 0 4 1002 236 77 26 0 chr1 54753636 54753675 -142441757 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1002 375 267 10 29 chr1 54754451 54754555 -142440877 - PB1D7 SINE Alu 0 120 19 4 1002 250 263 0 106 chr1 54755613 54755698 -142439734 - ID4_ SINE ID -7 76 1 4 1002 1370 134 36 23 chr1 54756128 54756349 -142439083 - URR1B DNA MER1_type 0 225 2 4 1002 1013 150 7 13 chr1 54756843 54756992 -142438440 - B1_Mur4 SINE Alu -1 149 2 4 1002 1018 274 59 19 chr1 54757123 54757394 -142438038 + B4 SINE B4 1 282 -10 4 1002 313 354 30 6 chr1 54757397 54757562 -142437870 + (CATG)n Simple_repeat Simple_repeat 3 171 0 4 1002 939 110 80 14 chr1 54757649 54757787 -142437645 + B1_Mus1 SINE Alu 1 147 -1 4 1002 373 287 9 0 chr1 54758289 54758397 -142437035 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 1002 317 229 14 0 chr1 54758425 54758495 -142436937 - RSINE1 SINE B4 -87 78 8 4 1002 21 0 0 0 chr1 54758569 54758590 -142436842 + AT_rich Low_complexity Low_complexity 1 21 0 4 1002 766 295 172 10 chr1 54758806 54759097 -142436335 + MER2 DNA MER2_type 3 340 -5 4 1002 496 319 13 103 chr1 54759661 54759895 -142435537 + MER20 DNA MER1_type 6 218 -1 4 1002 192 77 0 0 chr1 54761816 54761842 -142433590 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 4 1002 311 306 0 53 chr1 54762077 54762153 -142433279 - ID4_ SINE ID 0 83 12 4 1002 584 294 128 24 chr1 54762223 54762474 -142432958 - B4A SINE B4 -14 278 2 4 1002 714 269 38 38 chr1 54762534 54762851 -142432581 - L1M5 LINE L1 -2096 4050 3734 4 1002 621 296 67 43 chr1 54762945 54763153 -142432279 + B3A SINE B2 2 214 -2 4 1002 27 29 0 0 chr1 54765631 54765665 -142429767 + AT_rich Low_complexity Low_complexity 1 34 0 4 1002 189 224 0 0 chr1 54765744 54765802 -142429630 + (TATG)n Simple_repeat Simple_repeat 4 61 0 4 1002 231 147 0 0 chr1 54766348 54766382 -142429050 - L1MA9 LINE L1 -206 6106 6073 4 1002 231 147 0 0 chr1 54766422 54766456 -142428976 - L1MA9 LINE L1 -206 6106 6073 4 1002 250 250 89 22 chr1 54766607 54766697 -142428735 - L1MA9 LINE L1 -206 6106 6011 4 1002 474 157 0 0 chr1 54766736 54766819 -142428613 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1002 22 35 0 0 chr1 54766837 54766866 -142428566 + AT_rich Low_complexity Low_complexity 1 29 0 4 1002 423 38 0 0 chr1 54766866 54766919 -142428513 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1002 464 240 80 0 chr1 54766927 54767052 -142428380 - L1MA9 LINE L1 -574 5738 5604 4 1002 375 261 21 11 chr1 54768500 54768593 -142426839 + ORR1E LTR MaLR 3 96 -263 4 1002 651 247 70 6 chr1 54768652 54768823 -142426609 + RMER30 DNA MER1_type 20 201 -1 4 1002 635 300 117 16 chr1 54768823 54769056 -142426376 + ORR1E LTR MaLR 97 354 -5 4 1002 2235 158 36 0 chr1 54769199 54769560 -142425872 + ORR1D1 LTR MaLR 1 374 0 4 1002 195 42 0 0 chr1 54769766 54769790 -142425642 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1002 319 360 168 23 chr1 54770861 54771213 -142424219 - LTR78 LTR ERV1 -772 532 130 4 1002 318 106 0 0 chr1 54771431 54771478 -142423954 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 4 1002 707 168 217 37 chr1 54773173 54773334 -142422098 + B3 SINE B2 23 212 -4 4 1002 274 75 57 0 chr1 54773334 54773387 -142422045 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 4 1002 204 40 0 0 chr1 54773711 54773736 -142421696 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1002 8751 90 10 2 chr1 54775697 54777627 -142417805 + L1_Mus3 LINE L1 4691 6637 -1 4 1002 294 235 11 34 chr1 54777634 54777722 -142417710 + MLT1F LTR MaLR 459 544 -4 4 1002 706 200 62 0 chr1 54778140 54778270 -142417162 - B1_Mur1 SINE Alu -10 139 2 4 1002 391 252 46 0 chr1 54778278 54778372 -142417060 - PB1D10 SINE Alu -1 116 20 4 1002 2459 124 11 24 chr1 54778372 54778743 -142416689 - ORR1B2 LTR MaLR -1 366 1 4 1002 486 242 83 45 chr1 54778971 54779127 -142416305 + RSINE1 SINE B4 4 165 0 4 1002 206 306 0 0 chr1 54779131 54779180 -142416252 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1002 257 342 71 9 chr1 54779206 54779318 -142416114 + MER102c DNA MER1_type 201 319 -12 4 1002 343 336 18 0 chr1 54780634 54780744 -142414688 + Charlie12 DNA MER1_type 1 112 -2761 4 1002 211 208 54 54 chr1 54780958 54781014 -142414418 - PB1D7 SINE Alu 0 120 65 4 1002 309 227 15 29 chr1 54780965 54781033 -142414399 - ID_B1 SINE B4 -6 218 152 4 1002 8074 41 3 9 chr1 54781199 54782183 -142413249 - L1Md_F2 LINE L1 0 6582 5605 4 1002 227 217 15 77 chr1 54782195 54782260 -142413172 - B1F SINE Alu -88 61 1 4 1002 1430 69 16 21 chr1 54782435 54782628 -142412804 + B2_Mm1t SINE B2 2 193 0 4 1002 315 0 0 0 chr1 54783297 54783332 -142412100 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1002 21 0 0 0 chr1 54784445 54784466 -142410966 + AT_rich Low_complexity Low_complexity 1 21 0 4 1002 602 307 0 0 chr1 54785000 54785140 -142410292 - B4 SINE B4 0 292 153 4 1002 434 253 228 0 chr1 54785181 54785247 -142410185 - B3A SINE B2 -1 197 122 4 1002 432 0 0 0 chr1 54785247 54785295 -142410137 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1002 434 253 228 0 chr1 54785295 54785386 -142410046 - B3A SINE B2 -77 121 5 4 1002 200 200 0 0 chr1 54785461 54785496 -142409936 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 1002 539 289 59 0 chr1 54785498 54785633 -142409799 - ID_B1 SINE B4 -2 222 80 4 1002 1257 48 0 27 chr1 54787560 54787710 -142407722 - B1_Mus2 SINE Alu 0 147 2 4 125 448 306 9 0 chr1 54788016 54788124 -142407308 + PB1D10 SINE Alu 1 109 -8 4 1003 337 268 0 0 chr1 54788134 54788205 -142407227 + ID4 SINE ID 2 72 -11 4 1003 474 65 0 0 chr1 54788205 54788267 -142407165 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1003 227 269 0 43 chr1 54788267 54788337 -142407095 + GA-rich Low_complexity Low_complexity 1 67 0 4 1003 1050 133 0 0 chr1 54788772 54789007 -142406425 + (TG)n Simple_repeat Simple_repeat 1 235 0 4 1003 301 194 16 16 chr1 54789009 54789072 -142406360 - HAL1-3A_ME LINE L1 -830 2028 1966 4 1003 734 275 13 33 chr1 54789283 54789491 -142405941 - B3A SINE B2 -17 199 2 4 1003 225 231 63 150 chr1 54790909 54791036 -142404396 - RLTR1B LTR ERV1 -192 320 205 4 1003 220 72 47 23 chr1 54791314 54791357 -142404075 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4 1003 279 0 0 0 chr1 54792114 54792145 -142403287 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1003 226 234 0 0 chr1 54793490 54793537 -142401895 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 4 1003 313 288 35 12 chr1 54794981 54795153 -142400279 + (TA)n Simple_repeat Simple_repeat 1 176 0 4 1003 256 291 175 52 chr1 54796082 54796266 -142399166 + MIRc SINE MIR 14 212 -56 4 1003 232 348 139 31 chr1 54797516 54797774 -142397658 + L2c LINE L2 3064 3349 -38 4 1003 283 213 26 26 chr1 54798911 54798988 -142396444 - MIR SINE MIR 0 262 186 4 1003 453 303 92 13 chr1 54799042 54799239 -142396193 - MIR SINE MIR -51 211 1 4 1003 910 166 222 12 chr1 54801389 54801560 -142393872 - B3 SINE B2 -9 207 1 4 1003 954 238 91 12 chr1 54801927 54802170 -142393262 + B4 SINE B4 4 265 -27 4 1003 239 250 0 14 chr1 54802173 54802242 -142393190 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1003 282 56 0 0 chr1 54802242 54802278 -142393154 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1003 693 276 92 13 chr1 54802584 54802894 -142392538 - L1MC LINE L1 -2273 5609 5285 4 1003 624 276 24 0 chr1 54803221 54803391 -142392041 + L1MB7 LINE L1 5945 6118 -66 4 1003 602 259 23 0 chr1 54803430 54803561 -142391871 + B1F SINE Alu 5 138 -11 4 1003 306 0 0 0 chr1 54803562 54803596 -142391836 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1003 241 292 0 14 chr1 54804279 54804352 -142391080 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1003 407 368 67 22 chr1 54804354 54804760 -142390672 - L1ME4a LINE L1 -158 5966 5543 4 1003 603 181 0 0 chr1 54805340 54805456 -142389976 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 5 1003 251 289 115 8 chr1 54807453 54807575 -142387857 + MIRb SINE MIR 134 268 0 5 1003 587 290 34 7 chr1 54807899 54808045 -142387387 + B3A SINE B2 1 150 -48 5 1003 225 0 0 0 chr1 54808130 54808155 -142387277 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1003 1194 73 0 0 chr1 54808572 54808751 -142386681 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1003 4078 67 49 13 chr1 54808939 54809469 -142385963 + L1_Mus3 LINE L1 6085 6633 -5 5 1003 444 282 25 25 chr1 54810068 54810188 -142385244 + Lx8 LINE L1 7184 7303 -170 5 1003 382 185 12 36 chr1 54810188 54810272 -142385160 + Lx8 LINE L1 7392 7473 0 5 1003 195 42 0 0 chr1 54810352 54810376 -142385056 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1003 373 238 114 38 chr1 54810423 54810528 -142384904 - RSINE1 SINE B4 -29 136 24 5 1003 213 39 0 0 chr1 54810549 54810575 -142384857 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1003 373 333 11 28 chr1 54811006 54811188 -142384244 + Tigger5 DNA MER2_type 1 179 -2227 5 1003 583 335 0 24 chr1 54811655 54811823 -142383609 - RSINE1 SINE B4 0 165 2 5 1003 486 0 0 0 chr1 54812619 54812673 -142382759 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1003 772 294 0 40 chr1 54815230 54815453 -142379979 - B3 SINE B2 -2 214 1 5 1003 662 282 0 69 chr1 54816255 54816430 -142379002 + RSINE1 SINE B4 1 163 -2 5 1003 321 299 117 8 chr1 54816500 54816628 -142378804 - MIR SINE MIR -16 246 105 5 1003 254 262 110 18 chr1 54817287 54817396 -142378036 + PB1D7 SINE Alu 1 119 -1 5 1003 230 293 24 0 chr1 54817482 54817564 -142377868 - L1M5 LINE L1 -1012 5432 5349 5 1003 21 0 0 0 chr1 54818016 54818037 -142377395 + AT_rich Low_complexity Low_complexity 1 21 0 5 1003 216 0 0 0 chr1 54819534 54819558 -142375874 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1003 480 97 42 0 chr1 54820154 54820226 -142375206 + B1_Mur3 SINE Alu 75 149 0 5 1003 180 277 0 21 chr1 54820780 54820828 -142374604 - MIR SINE MIR 0 262 216 5 1003 302 256 36 12 chr1 54820964 54821047 -142374385 + B1_Mus1 SINE Alu 28 112 -36 5 1003 305 190 139 23 chr1 54821829 54821915 -142373517 + ID_B1 SINE B4 85 180 -44 5 1003 518 289 21 14 chr1 54824410 54824554 -142370878 - B1F1 SINE Alu -4 145 1 5 1003 226 250 329 21 chr1 54825067 54825085 -142370347 - B2_Mm1a SINE B2 -6 187 1 5 1003 569 272 48 0 chr1 54825085 54825210 -142370222 - RSINE1 SINE B4 -33 132 2 5 1003 3126 40 0 0 chr1 54825463 54825809 -142369623 - ORR1A1 LTR MaLR 0 346 1 5 1003 477 268 0 75 chr1 54825839 54825972 -142369460 + PB1 SINE Alu 3 125 -2 5 1003 295 297 79 46 chr1 54825972 54825991 -142369441 + B4A SINE B4 88 244 -48 5 1003 2131 133 62 0 chr1 54825992 54826330 -142369102 + ORR1B2 LTR MaLR 1 359 -8 5 1003 317 288 30 0 chr1 54826334 54826400 -142369032 + ID4_ SINE ID 8 75 -8 5 1003 22 70 0 0 chr1 54826895 54826938 -142368494 + AT_rich Low_complexity Low_complexity 1 43 0 5 1003 380 287 90 18 chr1 54827265 54827374 -142368058 + MER58A DNA MER1_type 46 162 -62 5 1003 2985 136 175 47 chr1 54827374 54827986 -142367446 + RMER6C LTR ERVK 1 690 0 5 1003 380 287 90 18 chr1 54827986 54828043 -142367389 + MER58A DNA MER1_type 163 223 -1 5 1003 1093 66 73 0 chr1 54828791 54828928 -142366504 + B1_Mm SINE Alu 1 147 0 5 1003 209 160 40 0 chr1 54828928 54828972 -142366460 + A-rich Low_complexity Low_complexity 9 54 0 5 1003 519 17 0 0 chr1 54828973 54829033 -142366399 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 5 1003 2329 184 53 93 chr1 54829078 54829678 -142365754 + Lx9 LINE L1 7069 7644 0 5 1003 225 364 52 22 chr1 54830671 54830699 -142364733 - ID_B1 SINE B4 0 224 86 5 1003 342 336 9 0 chr1 54830699 54830806 -142364626 - PB1D10 SINE Alu -5 112 5 5 1003 1641 285 97 11 chr1 54831888 54832505 -142362927 + Lx8 LINE L1 6449 7118 -355 5 1003 273 163 0 0 chr1 54834476 54834525 -142360907 + (TAA)n Simple_repeat Simple_repeat 2 50 0 5 1003 324 0 0 0 chr1 54834630 54834666 -142360766 + (CACCC)n Simple_repeat Simple_repeat 3 38 0 5 1003 1785 103 112 67 chr1 54835728 54836040 -142359392 + ORR1A3 LTR MaLR 1 326 0 5 1003 8988 65 2 37 chr1 54836049 54836730 -142358702 + L1Md_F2 LINE L1 4722 5362 -521 5 1003 1194 61 0 0 chr1 54836730 54836877 -142358555 - B1_Mm SINE Alu 0 147 1 5 1003 8988 56 1 10 chr1 54836877 54838044 -142357388 + L1Md_F2 LINE L1 5363 6527 -55 5 1003 11380 15 3 0 chr1 54838198 54839490 -142355942 - L1_Mm LINE L1 -1170 4713 3418 5 1003 8144 31 12 0 chr1 54839490 54840434 -142354998 + L1Md_A LINE L1 5628 6582 0 5 1003 677 259 36 12 chr1 54841244 54841412 -142354020 - B3 SINE B2 -6 210 39 5 1003 272 333 0 82 chr1 54841469 54841567 -142353865 - RSINE1 SINE B4 -75 90 1 5 1003 659 247 20 0 chr1 54841608 54841758 -142353674 - B3A SINE B2 -45 153 1 5 1003 407 164 22 39 chr1 54842558 54842736 -142352696 + (CA)n Simple_repeat Simple_repeat 2 176 0 5 1003 564 163 31 12 chr1 54842747 54843003 -142352429 + (CA)n Simple_repeat Simple_repeat 1 261 0 5 1003 468 265 242 35 chr1 54843011 54843238 -142352194 + B4A SINE B4 1 274 -18 5 1003 248 77 26 0 chr1 54843240 54843279 -142352153 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1003 387 0 0 0 chr1 54843279 54843321 -142352111 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1003 603 255 21 0 chr1 54843362 54843507 -142351925 - B1F SINE Alu -1 148 1 5 1003 248 241 131 32 chr1 54843527 54843709 -142351723 - L1ME5 LINE L1 -265 5929 5729 5 1003 319 268 34 23 chr1 54843994 54844082 -142351350 + L1MA10 LINE L1 6182 6270 -64 5 1003 469 132 25 34 chr1 54844592 54844710 -142350722 + C-rich Low_complexity Low_complexity 5 121 0 5 1003 333 0 0 0 chr1 54845740 54845777 -142349655 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1003 967 280 22 11 chr1 54845780 54846051 -142349381 - B4 SINE B4 -17 275 2 5 1003 1222 35 0 0 chr1 54847105 54847246 -142348186 + B1_Mus1 SINE Alu 1 141 -7 5 1003 183 42 0 0 chr1 54847247 54847271 -142348161 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1003 327 25 0 0 chr1 54847375 54847415 -142348017 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1003 570 295 57 6 chr1 54847418 54847575 -142347857 - B3A SINE B2 -33 165 1 5 1003 3286 50 2 0 chr1 54847969 54848368 -142347064 - MTB LTR MaLR 0 400 1 5 1003 2201 277 45 34 chr1 54849495 54850231 -142345201 + Lx9 LINE L1 6398 7141 -503 5 1003 567 207 43 20 chr1 54852224 54852388 -142343044 - MTD LTR MaLR 0 419 214 5 1003 826 145 7 0 chr1 54852425 54852563 -142342869 - B1_Mur3 SINE Alu -2 147 9 5 1003 560 265 73 39 chr1 54852562 54852766 -142342666 - MTD LTR MaLR -208 211 1 5 1003 1976 154 67 6 chr1 54853188 54853548 -142341884 + ORR1B1 LTR MaLR 1 382 -12 5 1003 3471 25 5 0 chr1 54854870 54855264 -142340168 - MTA_Mm LTR MaLR 0 396 1 5 1003 244 237 0 0 chr1 54856004 54856063 -142339369 + A-rich Low_complexity Low_complexity 1 59 0 5 1003 426 20 0 0 chr1 54856294 54856345 -142339087 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1003 189 0 0 0 chr1 54856346 54856367 -142339065 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 5 1003 731 288 108 100 chr1 54856553 54857414 -142338018 + L1M2 LINE L1 2625 3492 -2651 5 1003 1349 209 71 7 chr1 54857429 54857723 -142337709 - Lx7 LINE L1 -755 6941 6629 5 1003 1049 277 126 16 chr1 54857777 54858213 -142337219 + L1M5 LINE L1 5318 5801 -378 5 1003 298 165 62 12 chr1 54858426 54858506 -142336926 + Lx4A LINE L1 6961 7044 -14 5 1003 921 120 0 0 chr1 54858507 54858649 -142336783 + (GAA)n Simple_repeat Simple_repeat 3 144 0 5 1003 207 0 0 0 chr1 54858649 54858672 -142336760 + (CATA)n Simple_repeat Simple_repeat 2 24 0 5 1003 426 178 32 19 chr1 54859013 54859132 -142336300 + Lx4B LINE L1 6778 6941 -117 5 1003 261 0 0 0 chr1 54859164 54859193 -142336239 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1003 264 326 42 35 chr1 54859853 54859999 -142335433 + MIRc SINE MIR 17 168 -100 5 1003 207 0 0 0 chr1 54860080 54860103 -142335329 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1003 1167 106 191 0 chr1 54860321 54860510 -142334922 - URR1A DNA MER1_type -1 225 1 5 1003 384 119 0 0 chr1 54860728 54860787 -142334645 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1003 294 296 89 84 chr1 54860790 54861015 -142334417 - B4 SINE B4 -10 282 57 5 1003 26 0 0 0 chr1 54861148 54861174 -142334258 + AT_rich Low_complexity Low_complexity 1 26 0 5 1003 287 232 0 68 chr1 54862441 54862515 -142332917 - ID4_ SINE ID -14 69 1 5 1003 408 318 48 0 chr1 54862536 54862662 -142332770 - ID_B1 SINE B4 -12 212 81 5 1003 496 264 24 8 chr1 54862685 54862811 -142332621 - B1F1 SINE Alu -9 140 13 5 1003 452 284 28 28 chr1 54862811 54862823 -142332609 - ID_B1 SINE B4 -2 178 78 5 1003 583 192 167 78 chr1 54862926 54863287 -142332145 + RMER2 LTR ERV1 5 539 -28 5 1003 225 0 0 0 chr1 54864287 54864312 -142331120 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 5 1003 297 0 0 0 chr1 54865141 54865174 -142330258 + (CCG)n Simple_repeat Simple_repeat 1 33 0 5 1003 609 14 0 0 chr1 54865174 54865244 -142330188 + (TCC)n Simple_repeat Simple_repeat 2 71 0 5 1003 214 269 108 42 chr1 54865369 54865489 -142329943 + MIRb SINE MIR 93 220 -48 5 1003 1188 34 0 33 chr1 54866223 54866374 -142329058 + B1_Mm SINE Alu 2 147 0 5 1003 413 228 89 0 chr1 54866662 54866763 -142328669 - ID_B1 SINE B4 -29 195 86 5 1003 2870 257 109 59 chr1 54868086 54869273 -142326159 + Lx8 LINE L1 5842 7087 -386 6 1003 208 77 51 0 chr1 54869291 54869330 -142326102 + (GGA)n Simple_repeat Simple_repeat 2 42 0 6 1003 381 307 79 11 chr1 54870288 54870466 -142324966 + MLT1G LTR MaLR 344 533 -58 6 1003 494 320 34 0 chr1 54871399 54871574 -142323858 + MER5A DNA MER1_type 6 186 -3 6 1003 213 180 32 16 chr1 54872951 54873013 -142322419 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1003 192 40 0 0 chr1 54873053 54873078 -142322354 + (TCTCTG)n Simple_repeat Simple_repeat 6 30 0 6 1003 546 89 0 0 chr1 54873139 54873229 -142322203 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1003 420 20 0 0 chr1 54873229 54873278 -142322154 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1003 233 333 108 0 chr1 54873278 54873389 -142322043 - RSINE1 SINE B4 -41 124 2 6 1003 399 288 80 33 chr1 54873442 54873593 -142321839 - RSINE1 SINE B4 0 165 8 6 1003 1688 187 77 16 chr1 54873619 54873984 -142321448 - RLTR11A2 LTR ERVK -140 387 1 6 1003 530 324 55 14 chr1 54874520 54874739 -142320693 + MLT1J LTR MaLR 207 434 -78 6 1003 205 230 118 35 chr1 54874814 54874927 -142320505 - MIR SINE MIR -52 216 81 6 1003 206 62 31 0 chr1 54875462 54875494 -142319938 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1003 386 331 121 40 chr1 54875801 54876050 -142319382 + Lx8 LINE L1 7146 7414 -59 6 1003 225 0 0 0 chr1 54876098 54876123 -142319309 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1003 216 0 0 0 chr1 54876123 54876146 -142319286 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1003 274 45 45 0 chr1 54876190 54876234 -142319198 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1003 351 0 0 0 chr1 54876261 54876300 -142319132 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1003 487 190 14 0 chr1 54876300 54876442 -142318990 + GA-rich Low_complexity Low_complexity 2 145 0 6 1003 32 26 0 0 chr1 54876492 54876531 -142318901 + AT_rich Low_complexity Low_complexity 1 39 0 6 1003 1203 185 5 9 chr1 54878695 54878908 -142316524 - B3 SINE B2 0 216 5 6 1003 1377 236 62 9 chr1 54881297 54881716 -142313716 + RCHARR1 DNA MER1_type 58 498 -476 6 1003 357 252 56 20 chr1 54881721 54881858 -142313574 + B4 SINE B4 8 165 0 6 1003 921 246 98 96 chr1 54881857 54882098 -142313334 + RCHARR1 DNA MER1_type 483 716 -258 6 1003 443 293 44 33 chr1 54882098 54882278 -142313154 + B3A SINE B2 1 182 -16 6 1003 921 246 98 96 chr1 54882278 54882527 -142312905 + RCHARR1 DNA MER1_type 717 974 0 6 1003 243 279 101 0 chr1 54882921 54883000 -142312432 + L2b LINE L2 3259 3345 -30 6 1003 399 274 53 30 chr1 54883123 54883292 -142312140 + MLT1J1 LTR MaLR 79 251 -193 6 1003 306 333 15 0 chr1 54884673 54884805 -142310627 + Charlie4a DNA MER1_type 61 194 -314 6 1003 302 253 12 12 chr1 54885155 54885235 -142310197 - ID4 SINE ID -3 80 1 6 1003 442 248 41 8 chr1 54885816 54885938 -142309494 - 7SK RNA RNA -91 240 115 6 1003 3287 41 0 0 chr1 54887807 54888199 -142307233 + L1Md_T LINE L1 6191 6582 0 6 1003 200 200 0 0 chr1 54888260 54888295 -142307137 + CT-rich Low_complexity Low_complexity 1 35 0 6 1003 774 284 144 33 chr1 54888526 54889023 -142306409 + MER44B DNA MER2_type 1 550 0 6 1003 657 25 0 0 chr1 54889614 54889693 -142305739 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 6 1003 297 51 0 0 chr1 54889877 54889916 -142305516 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1003 660 259 104 0 chr1 54890109 54890310 -142305122 + B4A SINE B4 10 231 -61 6 1003 404 209 0 85 chr1 54890302 54890396 -142305036 + B1_Mur2 SINE Alu 43 128 -21 6 1003 307 184 12 95 chr1 54890399 54890483 -142304949 + B4A SINE B4 216 292 0 6 1003 22 0 0 0 chr1 54891914 54891936 -142303496 + AT_rich Low_complexity Low_complexity 1 22 0 6 1003 244 237 74 203 chr1 54892061 54892209 -142303223 + B4 SINE B4 164 292 0 6 1003 405 239 0 0 chr1 54892210 54892327 -142303105 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1003 180 111 0 0 chr1 54892359 54892386 -142303046 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 6 1003 207 122 39 39 chr1 54892652 54892703 -142302729 + (CTCTG)n Simple_repeat Simple_repeat 2 52 0 6 1003 451 237 164 48 chr1 54893158 54893304 -142302128 + RSINE1 SINE B4 3 165 0 6 1003 202 218 48 19 chr1 54893333 54893436 -142301996 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 6 1003 436 285 106 15 chr1 54894107 54894239 -142301193 - B1F SINE Alu -1 148 5 6 1003 794 142 0 88 chr1 54894359 54894506 -142300926 - B1_Mur4 SINE Alu -11 139 6 6 1003 470 319 0 47 chr1 54895428 54895599 -142299833 + RSINE1 SINE B4 1 163 -2 6 1003 1111 61 0 39 chr1 54895851 54896005 -142299427 - B1_Mus1 SINE Alu 0 148 1 6 1003 617 268 83 10 chr1 54897550 54897742 -142297690 + B3 SINE B2 1 206 -10 6 1003 224 122 24 0 chr1 54897756 54897797 -142297635 + (GAA)n Simple_repeat Simple_repeat 1 42 0 6 1003 665 218 15 22 chr1 54897800 54897936 -142297496 + ID_B1 SINE B4 79 213 -11 6 1003 3469 58 40 4 chr1 54897936 54898386 -142297046 + L1_Mus3 LINE L1 6166 6631 -7 6 1003 585 0 0 0 chr1 54900250 54900315 -142295117 + (CTTG)n Simple_repeat Simple_repeat 2 66 0 6 1003 524 191 54 31 chr1 54900315 54900445 -142294987 - ID_B1 SINE B4 -10 214 82 6 1003 1271 291 122 45 chr1 54902064 54902885 -142292547 + L1MB5 LINE L1 5290 6181 -2 6 1003 524 285 78 27 chr1 54903092 54903348 -142292084 - B4A SINE B4 -19 273 5 6 1003 26 30 0 0 chr1 54903358 54903391 -142292041 + AT_rich Low_complexity Low_complexity 1 33 0 6 1003 378 263 42 8 chr1 54903613 54903732 -142291700 - MER102b DNA MER1_type -217 124 2 6 1003 251 364 48 20 chr1 54904243 54904389 -142291043 + RMER30 DNA MER1_type 21 170 -32 6 1003 516 282 44 6 chr1 54908306 54908488 -142286944 - MamRep137 DNA TcMar? -202 242 54 6 1003 22 0 0 0 chr1 54909454 54909476 -142285956 + AT_rich Low_complexity Low_complexity 1 22 0 6 1003 423 52 0 0 chr1 54909967 54910025 -142285407 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 6 1003 402 333 26 26 chr1 54912835 54913026 -142282406 + MER2 DNA MER2_type 85 275 -70 6 1003 769 288 70 46 chr1 54913352 54913636 -142281796 + B4 SINE B4 2 292 0 6 1003 21 0 0 0 chr1 54913813 54913834 -142281598 + AT_rich Low_complexity Low_complexity 1 21 0 6 1003 1295 165 100 38 chr1 54913959 54914074 -142281358 + ORR1C1 LTR MaLR 18 147 -231 6 1003 180 0 0 0 chr1 54914074 54914094 -142281338 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1003 1295 158 111 44 chr1 54914094 54914290 -142281142 + ORR1C1 LTR MaLR 148 369 -9 6 1003 778 210 7 0 chr1 54914365 54914508 -142280924 + B1_Mur2 SINE Alu 1 144 -5 6 1003 190 200 45 15 chr1 54914512 54914578 -142280854 + GA-rich Low_complexity Low_complexity 2 69 0 6 1003 230 151 19 19 chr1 54914677 54914731 -142280701 - L1M5 LINE L1 -415 5825 5772 6 1003 688 230 50 65 chr1 54914731 54914931 -142280501 + B3A SINE B2 1 197 -1 6 1003 285 273 0 0 chr1 54915905 54916033 -142279399 + (CCA)n Simple_repeat Simple_repeat 1 128 0 6 1003 23 33 0 0 chr1 54916469 54916499 -142278933 + AT_rich Low_complexity Low_complexity 1 30 0 6 1003 189 236 39 77 chr1 54917681 54917759 -142277673 + MER5B DNA MER1_type 18 92 -86 6 1003 234 261 139 30 chr1 54917806 54917919 -142277513 - MIRc SINE MIR -48 160 37 6 1004 432 122 0 0 chr1 54919733 54919815 -142275617 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1004 455 230 156 16 chr1 54919918 54920046 -142275386 + RSINE1 SINE B4 12 157 -8 6 1004 865 193 83 0 chr1 54920411 54920603 -142274829 + B3 SINE B2 5 212 -4 6 1004 255 330 74 70 chr1 54920719 54920963 -142274469 - MIR SINE MIR 0 262 18 6 1004 515 279 90 12 chr1 54920992 54921159 -142274273 - ID_B1 SINE B4 -19 205 26 6 1004 316 187 22 45 chr1 54923371 54923550 -142271882 + CT-rich Low_complexity Low_complexity 1 175 0 6 1004 276 264 82 14 chr1 54925457 54925530 -142269902 + RSINE1 SINE B4 1 78 -87 6 1004 3695 122 42 3 chr1 54925539 54926106 -142269326 + Lx3C LINE L1 6379 6967 -9 6 1004 22 0 0 0 chr1 54926112 54926134 -142269298 + AT_rich Low_complexity Low_complexity 1 22 0 6 1004 2668 148 85 20 chr1 54926179 54926675 -142268757 - RLTR12B LTR ERVK 0 528 1 6 1004 314 232 43 0 chr1 54926729 54926798 -142268634 - ID4_ SINE ID -3 80 9 6 1004 1299 109 38 0 chr1 54926840 54927024 -142268408 - B2_Mm2 SINE B2 -4 191 1 6 1004 337 325 109 40 chr1 54927599 54927903 -142267529 - ORR1E LTR MaLR -33 326 2 6 1004 339 273 0 13 chr1 54928216 54928294 -142267138 + RSINE1 SINE B4 1 77 -88 6 1004 974 221 87 29 chr1 54928308 54928627 -142266805 - MTD LTR MaLR -12 407 6 6 1004 245 218 0 52 chr1 54928633 54928691 -142266741 + RSINE1 SINE B4 77 131 -34 6 1004 492 235 0 10 chr1 54928748 54928847 -142266585 + B1_Mur1 SINE Alu 33 130 -19 6 1004 1175 199 145 45 chr1 54929001 54929353 -142266079 - MTD LTR MaLR -28 391 5 6 1004 640 301 99 3 chr1 54929733 54930016 -142265416 - MLT1A0 LTR MaLR -55 310 1 6 1004 682 224 6 18 chr1 54931351 54931519 -142263913 - MTD LTR MaLR -252 167 2 6 1004 24 0 0 0 chr1 54932449 54932473 -142262959 + AT_rich Low_complexity Low_complexity 1 24 0 6 1004 1206 191 0 0 chr1 54932489 54932693 -142262739 + B3 SINE B2 6 209 -7 6 1004 368 338 139 5 chr1 54933035 54933243 -142262189 - MLT1L LTR MaLR -342 268 33 6 1004 357 255 104 0 chr1 54933334 54933440 -142261992 - MIR SINE MIR -59 203 87 6 1004 894 254 5 9 chr1 54933602 54933813 -142261619 - B3 SINE B2 -3 213 4 6 1004 226 295 13 0 chr1 54933872 54933950 -142261482 - ID4_ SINE ID -3 80 2 6 1004 234 194 114 43 chr1 54934005 54934075 -142261357 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 6 1004 432 0 0 0 chr1 54934126 54934174 -142261258 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1004 25 0 0 0 chr1 54934229 54934254 -142261178 + AT_rich Low_complexity Low_complexity 1 25 0 7 1004 481 172 205 0 chr1 54935714 54935836 -142259596 - B1_Mur2 SINE Alu 0 149 3 7 1004 828 316 36 77 chr1 54936961 54937466 -142257966 + Lx8 LINE L1 6982 7465 -8 7 1004 222 200 39 39 chr1 54940677 54940729 -142254703 - ID_B1 SINE B4 -89 135 84 7 1004 310 298 156 49 chr1 54940895 54941202 -142254230 - L1MB3 LINE L1 0 6183 5844 7 1004 837 294 68 59 chr1 54941216 54941376 -142254056 - Lx8 LINE L1 -1 7472 7328 7 1004 2118 111 8 90 chr1 54941376 54941654 -142253778 - ORR1A3 LTR MaLR 0 326 56 7 1004 1155 51 0 0 chr1 54941654 54941792 -142253640 + B1_Mus2 SINE Alu 2 139 -8 7 1004 194 0 0 37 chr1 54941792 54941819 -142253613 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1004 2118 111 8 90 chr1 54941819 54941894 -142253538 - ORR1A3 LTR MaLR -271 55 2 7 1004 837 294 68 59 chr1 54941894 54942142 -142253290 - Lx8 LINE L1 -146 7327 7060 7 1004 225 0 0 0 chr1 54942330 54942355 -142253077 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 7 1004 211 329 0 25 chr1 54942355 54942436 -142252996 - ID4_ SINE ID -3 80 2 7 1004 686 252 122 94 chr1 54942443 54942846 -142252586 - L1MB3 LINE L1 -358 5813 5400 7 1004 234 192 38 25 chr1 54943191 54943299 -142252133 + CT-rich Low_complexity Low_complexity 1 109 0 7 1004 315 0 0 0 chr1 54943583 54943618 -142251814 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1004 1713 26 0 0 chr1 54944030 54944222 -142251210 - B2_Mm1a SINE B2 0 193 2 7 1004 485 295 198 26 chr1 54945440 54945708 -142249724 + MLT1J LTR MaLR 5 318 -194 7 1004 253 318 34 11 chr1 54945953 54946042 -142249390 + YREP_Mm Unknown Unknown 173 263 -1549 7 1004 413 368 8 0 chr1 54945965 54946090 -142249342 - ID_B1 SINE B4 -13 211 86 7 1004 461 252 37 0 chr1 54946396 54946503 -142248929 + PB1D10 SINE Alu 7 117 0 7 1004 4479 16 2 0 chr1 54946660 54947152 -142248280 + MT2_Mm LTR ERVL 1 493 0 7 1004 41569 15 14 0 chr1 54947152 54952439 -142242993 + MERVL-int LTR ERVL 1 5360 -125 7 1004 403 167 46 35 chr1 54952439 54952526 -142242906 + ORR1A3-int LTR MaLR 553 640 -1323 7 1004 319 0 0 0 chr1 54952526 54952564 -142242868 + MERVL-int LTR ERVL 5448 5485 0 7 1004 4479 16 2 0 chr1 54952564 54953056 -142242376 + MT2_Mm LTR ERVL 1 493 0 7 1004 600 269 132 0 chr1 54953081 54953278 -142242154 + ID_B1 SINE B4 2 224 0 7 1004 652 251 133 0 chr1 54954128 54954306 -142241126 + B3 SINE B2 6 205 -11 7 1004 282 221 0 105 chr1 54954720 54954806 -142240626 + ID4 SINE ID 4 80 -3 7 1004 592 248 76 37 chr1 54955044 54955225 -142240207 + B3A SINE B2 33 214 -2 7 1004 209 373 45 53 chr1 54955998 54956131 -142239301 - L2b LINE L2 -208 3167 3036 7 1004 200 206 0 0 chr1 54958452 54958486 -142236946 + polypurine Low_complexity Low_complexity 4 37 0 7 1004 196 327 26 22 chr1 54958573 54958671 -142236761 + MIR SINE MIR 110 215 -53 7 1004 203 0 0 36 chr1 54959143 54959171 -142236261 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 7 1004 5277 127 60 57 chr1 54959252 54960151 -142235281 + RMER19B LTR ERVK 1 902 0 7 1004 186 43 0 0 chr1 54960320 54960343 -142235089 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1004 2953 251 84 105 chr1 54960357 54961414 -142234018 + Lx5 LINE L1 6010 7044 -6 7 1004 568 171 180 104 chr1 54961424 54961607 -142233825 - B3A SINE B2 0 198 2 7 1004 414 267 77 91 chr1 54961641 54961828 -142233604 - B3A SINE B2 -1 197 7 7 1004 295 344 73 12 chr1 54961851 54962016 -142233416 + MER20B DNA MER1_type 308 482 -301 7 1004 259 263 39 26 chr1 54962070 54962148 -142233284 - ID2 SINE ID -4 79 1 7 1004 497 53 0 73 chr1 54964853 54964935 -142230497 + B1_Mus2 SINE Alu 2 77 -70 7 1004 283 214 83 0 chr1 54965312 54965396 -142230036 + Lx9 LINE L1 7550 7640 -4 7 1004 319 329 0 0 chr1 54965420 54965499 -142229933 + PB1D10 SINE Alu 7 85 -32 7 1004 703 263 123 37 chr1 54965532 54965832 -142229600 + Charlie2b DNA MER1_type 2457 2782 0 7 1004 707 259 48 53 chr1 54965991 54966219 -142229213 + B4A SINE B4 5 231 -61 7 1004 507 237 37 22 chr1 54966225 54966359 -142229073 + B1_Mur4 SINE Alu 10 145 -5 7 1004 530 278 0 95 chr1 54966369 54966516 -142228916 + RSINE1 SINE B4 27 159 -6 7 1004 249 192 12 121 chr1 54966557 54966640 -142228792 + B4A SINE B4 219 292 0 7 1004 375 267 81 14 chr1 54966925 54967073 -142228359 + RSINE1 SINE B4 4 161 -4 7 1004 243 0 0 0 chr1 54968043 54968070 -142227362 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1004 22 0 0 0 chr1 54968149 54968171 -142227261 + AT_rich Low_complexity Low_complexity 1 22 0 7 1004 818 333 44 13 chr1 54968644 54968960 -142226472 - MER58B DNA MER1_type -12 329 4 7 1004 235 292 16 0 chr1 54970100 54970172 -142225260 - MIR SINE MIR -131 137 65 7 1004 279 0 0 0 chr1 54970174 54970205 -142225227 + (TAA)n Simple_repeat Simple_repeat 2 32 0 7 1004 200 280 0 0 chr1 54970664 54970714 -142224718 + CT-rich Low_complexity Low_complexity 2 51 0 7 1004 500 306 22 0 chr1 54970717 54970851 -142224581 - ID_B1 SINE B4 -7 217 81 7 1004 271 257 0 0 chr1 54971261 54971331 -142224101 - ID4_ SINE ID -13 70 1 7 1004 208 292 93 13 chr1 54972021 54972138 -142223294 - MIR SINE MIR -109 159 24 7 1004 811 245 61 0 chr1 54972733 54972929 -142222503 + ID_B1 SINE B4 3 210 -14 7 1004 666 212 29 7 chr1 54972949 54973087 -142222345 + B1_Mur3 SINE Alu 3 143 -6 7 1004 228 235 0 19 chr1 54973087 54973139 -142222293 + GA-rich Low_complexity Low_complexity 1 51 0 7 1004 615 221 14 62 chr1 54973304 54973449 -142221983 - B1_Mur1 SINE Alu -10 139 2 7 1004 431 99 0 12 chr1 54974569 54974673 -142220759 - B2_Mm2 SINE B2 -10 185 47 7 1004 1096 103 85 0 chr1 54974730 54974895 -142220537 - B2_Mm2 SINE B2 -14 181 3 7 1004 220 293 172 30 chr1 54975221 54975390 -142220042 - L2 LINE L2 -528 2891 2699 7 1004 412 254 50 71 chr1 54976545 54976685 -142218747 - B1F SINE Alu -8 141 5 7 1004 840 219 7 0 chr1 54977781 54977932 -142217500 - RSINE1 SINE B4 -12 153 2 7 1004 225 230 107 13 chr1 54978068 54978143 -142217289 - B4A SINE B4 -210 82 1 7 1004 380 275 147 7 chr1 54978214 54978357 -142217075 + RSINE1 SINE B4 1 163 -2 7 1004 180 0 0 0 chr1 54978910 54978930 -142216502 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 7 1004 358 293 87 36 chr1 54979164 54979359 -142216073 + MIR SINE MIR 3 207 -55 7 1004 21 0 0 0 chr1 54979583 54979604 -142215828 + AT_rich Low_complexity Low_complexity 1 21 0 7 1004 303 195 136 49 chr1 54980224 54980305 -142215127 + MER81 DNA AcHobo 2 89 -25 7 1004 194 62 0 30 chr1 54981033 54981066 -142214366 + (CACCC)n Simple_repeat Simple_repeat 1 32 0 7 1004 198 0 0 0 chr1 54982219 54982241 -142213191 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 7 1004 21 71 0 0 chr1 54982917 54982959 -142212473 + GC_rich Low_complexity Low_complexity 1 42 0 7 1004 1794 196 18 60 chr1 54984028 54984091 -142211341 + MTD LTR MaLR 3 64 -355 7 1004 324 0 0 0 chr1 54984091 54984127 -142211305 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1004 1794 196 18 60 chr1 54984127 54984498 -142210934 + MTD LTR MaLR 65 419 0 7 1004 1177 51 0 0 chr1 54984615 54984753 -142210679 + B1_Mus2 SINE Alu 1 138 -9 7 1004 229 26 26 26 chr1 54984753 54984792 -142210640 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1004 254 270 20 30 chr1 54985533 54985633 -142209799 - PB1D10 SINE Alu -2 125 21 7 1004 357 290 171 46 chr1 54985636 54985940 -142209492 - MER20B DNA MER1_type -11 772 431 7 1004 218 242 316 31 chr1 54985943 54985969 -142209463 + B1F SINE Alu 21 144 -3 7 1004 339 157 200 0 chr1 54985969 54986039 -142209393 + ID_B1 SINE B4 139 222 -2 7 1004 316 370 65 46 chr1 54986046 54986340 -142209092 + RSINE1 SINE B4 10 281 -11 7 1004 466 301 87 58 chr1 54986824 54986999 -142208433 + ERVL-E-int LTR ERVL 1698 1885 -3782 7 1004 342 0 0 0 chr1 54986999 54987037 -142208395 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 7 1004 1072 75 0 0 chr1 54987037 54987170 -142208262 - B1_Mus1 SINE Alu -13 135 3 7 1004 466 310 86 54 chr1 54987170 54987302 -142208130 + ERVL-E-int LTR ERVL 1886 2074 -3640 7 1004 1996 179 47 3 chr1 54987392 54987773 -142207659 - RMER10B LTR ERVL 0 398 1 7 1004 339 25 0 0 chr1 54988568 54988608 -142206824 + (CCCCCT)n Simple_repeat Simple_repeat 5 44 0 7 1004 387 0 0 0 chr1 54988628 54988671 -142206761 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1004 233 246 27 14 chr1 54988684 54988758 -142206674 + CT-rich Low_complexity Low_complexity 1 75 0 7 1004 333 214 0 73 chr1 54988925 54989021 -142206411 + MLT1A1 LTR MaLR 320 408 0 7 1004 374 287 30 0 chr1 54989024 54989125 -142206307 + ERVL-E-int LTR ERVL 2876 2979 -2688 7 1004 936 230 77 66 chr1 54989185 54989538 -142205894 + RLTR12B LTR ERVK 41 372 -196 7 1004 2244 124 8 8 chr1 54989539 54989898 -142205534 - RLTR15 LTR ERVK 0 359 1 7 1004 327 227 79 42 chr1 54989959 54990097 -142205335 + RLTR12B LTR ERVK 366 496 -32 7 1004 741 277 125 28 chr1 54990177 54990573 -142204859 + ERVL-E-int LTR ERVL 3099 3500 -2167 7 1004 624 70 0 48 chr1 54991167 54991272 -142204160 + L1_Mus2 LINE L1 6467 6566 0 7 1004 488 320 55 104 chr1 54991275 54991688 -142203744 + ERVL-E-int LTR ERVL 4531 4954 -803 7 1004 1303 82 6 6 chr1 54991688 54991860 -142203572 - B2_Mm2 SINE B2 -19 176 5 7 1004 488 339 66 57 chr1 54991860 54992051 -142203381 + ERVL-E-int LTR ERVL 4850 5040 -627 7 1004 423 281 8 58 chr1 54992084 54992205 -142203227 - PB1D7 SINE Alu 0 120 6 7 1004 418 254 94 94 chr1 54992232 54992426 -142203006 + Lx9 LINE L1 7390 7588 -56 7 1004 1075 162 71 9 chr1 54992426 54992638 -142202794 - URR1B DNA MER1_type 0 225 1 7 1004 418 254 94 94 chr1 54992638 54992678 -142202754 + Lx9 LINE L1 7589 7624 -20 7 1004 451 292 27 20 chr1 54992971 54993118 -142202314 - MER20B DNA MER1_type -447 336 189 7 1004 1103 176 52 24 chr1 54993500 54993710 -142201722 + B3 SINE B2 1 216 0 7 1004 2642 261 161 16 chr1 54993757 54994050 -142201382 + Lx8 LINE L1 6092 6422 -1051 7 1004 3971 163 103 78 chr1 54994050 54994930 -142200502 - RMER19B LTR ERVK 0 902 1 7 1004 2642 261 161 16 chr1 54994930 54995567 -142199865 + Lx8 LINE L1 6423 7157 -316 7 1004 204 311 97 86 chr1 54995725 54995982 -142199450 + L2c LINE L2 3020 3279 -108 7 1004 511 238 71 24 chr1 54996566 54996727 -142198705 - B3A SINE B2 -13 203 41 7 1004 31 44 0 0 chr1 54996981 54997026 -142198406 + AT_rich Low_complexity Low_complexity 1 45 0 8 1004 242 308 0 37 chr1 54997706 54997787 -142197645 + GA-rich Low_complexity Low_complexity 2 79 0 8 1004 300 53 0 0 chr1 54997787 54997825 -142197607 + (GGAA)n Simple_repeat Simple_repeat 4 41 0 8 1004 823 224 92 0 chr1 54998499 54998695 -142196737 + B3 SINE B2 2 215 -1 8 1004 2794 154 121 57 chr1 54999306 54999836 -142195596 + RLTR20D LTR ERVK 5 568 0 8 1004 879 56 0 0 chr1 54999892 55000000 -142195432 + B2_Mm2 SINE B2 1 108 -87 8 1004 501 74 25 0 chr1 55000000 55000081 -142195351 + B2_Mm1t SINE B2 110 192 -1 1 1004 1262 195 218 3 chr1 55000089 55000433 -142194999 + MTD LTR MaLR 1 418 -1 2 1004 609 336 5 14 chr1 55000525 55000745 -142194687 - B4A SINE B4 -73 219 2 3 1004 1625 52 0 0 chr1 55000775 55000967 -142194465 + B2_Mm1a SINE B2 2 193 0 4 1004 446 294 26 19 chr1 55001016 55001172 -142194260 + B4A SINE B4 136 292 0 5 1004 1073 224 5 28 chr1 55002645 55002686 -142192746 + B3 SINE B2 1 41 -175 6 1004 2188 118 21 12 chr1 55002686 55003012 -142192420 + ORR1A4 LTR MaLR 1 329 0 7 1004 1073 224 5 28 chr1 55003012 55003186 -142192246 + B3 SINE B2 42 211 -5 6 1004 412 311 18 85 chr1 55003396 55003515 -142191917 + RSINE1 SINE B4 6 125 -40 8 1004 444 37 0 0 chr1 55003515 55003569 -142191863 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1004 412 311 18 85 chr1 55003569 55003614 -142191818 + RSINE1 SINE B4 126 159 -6 8 1004 1998 125 172 6 chr1 55003710 55004047 -142191385 - ORR1B1 LTR MaLR -1 393 1 1 1004 303 308 9 9 chr1 55004317 55004422 -142191010 - PB1D10 SINE Alu -11 106 2 1 1004 752 294 39 50 chr1 55004564 55004748 -142190684 - B4 SINE B4 -16 276 97 1 1004 1520 47 5 50 chr1 55004748 55004775 -142190657 - B2_Mm1t SINE B2 -1 192 172 1 1004 1548 58 5 0 chr1 55004775 55004966 -142190466 + B2_Mm1a SINE B2 2 193 0 1 1004 1520 47 5 50 chr1 55004966 55005139 -142190293 - B2_Mm1t SINE B2 -22 171 1 1 1004 752 294 39 50 chr1 55005139 55005233 -142190199 - B4 SINE B4 -196 96 1 1 1004 253 195 0 0 chr1 55005292 55005333 -142190099 + PB1D9 SINE Alu 1 41 -79 1 1004 710 23 11 0 chr1 55005387 55005475 -142189957 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 1 1004 312 261 0 0 chr1 55005484 55005553 -142189879 + ID4_ SINE ID 4 72 -11 1 1004 346 316 56 13 chr1 55005590 55005821 -142189611 - L1MC5 LINE L1 -67 7894 7654 1 1004 325 283 9 0 chr1 55005929 55006035 -142189397 + CT-rich Low_complexity Low_complexity 2 108 0 1 1004 845 257 5 18 chr1 55006331 55006498 -142188934 + B3 SINE B2 1 165 -51 2 1004 461 17 0 17 chr1 55006498 55006557 -142188875 + (CATA)n Simple_repeat Simple_repeat 2 59 0 2 1004 845 257 5 18 chr1 55006557 55006607 -142188825 + B3 SINE B2 166 215 -1 2 1004 1239 35 7 0 chr1 55006674 55006819 -142188613 - B1_Mus2 SINE Alu 0 147 2 2 1004 27 0 0 0 chr1 55007111 55007138 -142188294 + AT_rich Low_complexity Low_complexity 1 27 0 2 1004 2834 71 27 3 chr1 55007595 55007964 -142187468 + L1Md_F2 LINE L1 6205 6582 0 2 1004 189 0 0 0 chr1 55007990 55008011 -142187421 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 1004 632 293 78 24 chr1 55008012 55008301 -142187131 + L1MA4 LINE L1 5977 6297 0 2 1004 697 234 31 12 chr1 55008304 55008464 -142186968 + RSINE1 SINE B4 3 165 0 2 1004 35 55 0 14 chr1 55008481 55008540 -142186892 + AT_rich Low_complexity Low_complexity 1 59 0 2 1004 1300 91 32 0 chr1 55008540 55008727 -142186705 + B2_Mm1a SINE B2 1 193 0 2 1004 35 55 0 14 chr1 55008727 55008741 -142186691 + AT_rich Low_complexity Low_complexity 1 14 0 3 1004 1000 191 6 0 chr1 55008765 55008938 -142186494 - MERVL_2A-int LTR ERVL -622 5139 4966 3 1004 234 303 26 0 chr1 55009419 55009495 -142185937 + ID4 SINE ID 5 82 -1 3 1004 2375 132 0 0 chr1 55009678 55010042 -142185390 - ORR1B1 LTR MaLR -4 390 27 3 1004 512 283 126 27 chr1 55010054 55010357 -142185075 - MLT1A1 LTR MaLR -40 368 1 3 1004 920 143 14 7 chr1 55011058 55011206 -142184226 - B1_Mur4 SINE Alu 0 150 2 3 1004 282 211 50 40 chr1 55011634 55011733 -142183699 + MLT1A0 LTR MaLR 39 138 -227 3 1004 2171 150 18 18 chr1 55011733 55012119 -142183313 + ORR1B1 LTR MaLR 1 386 -8 3 1004 317 284 158 31 chr1 55012106 55012302 -142183130 + MLT1A0 LTR MaLR 145 365 0 3 1004 3543 202 128 52 chr1 55012428 55013374 -142182058 - RMER1B Other Other -4 1062 45 3 1004 8198 32 0 0 chr1 55014480 55015423 -142180009 + L1Md_T LINE L1 5640 6582 0 3 1004 482 306 68 6 chr1 55015452 55015613 -142179819 + B3A SINE B2 10 180 -18 4 1004 21 0 0 0 chr1 55015617 55015638 -142179794 + AT_rich Low_complexity Low_complexity 1 21 0 4 1004 448 240 10 0 chr1 55015672 55015768 -142179664 + PB1D7 SINE Alu 17 113 -7 4 1004 742 131 128 23 chr1 55016125 55016258 -142179174 + B1_Mus2 SINE Alu 1 147 0 4 1004 271 204 22 7 chr1 55016283 55016367 -142179065 + B2_Mm2 SINE B2 4 88 -128 4 1004 2487 128 16 36 chr1 55016538 55016977 -142178455 + Lx2B LINE L1 6568 6997 -3 4 1004 212 331 88 29 chr1 55017408 55017545 -142177887 + MIRb SINE MIR 102 246 -22 4 1004 180 0 0 0 chr1 55017824 55017844 -142177588 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1004 867 182 0 7 chr1 55018219 55018368 -142177064 - B1_Mus1 SINE Alu 0 148 1 4 1004 230 254 92 8 chr1 55018468 55018587 -142176845 - L1M5 LINE L1 -763 5477 5349 4 1004 489 273 39 13 chr1 55018595 55018751 -142176681 - RSINE1 SINE B4 -3 162 3 5 1004 247 302 101 0 chr1 55018920 55019049 -142176383 - B4A SINE B4 -149 143 2 5 1004 4205 71 21 10 chr1 55019091 55019672 -142175760 + Lx3_Mus LINE L1 6423 7009 0 5 1004 36 23 0 0 chr1 55019672 55019715 -142175717 + AT_rich Low_complexity Low_complexity 1 43 0 5 1004 2044 142 55 22 chr1 55019958 55020324 -142175108 + ORR1C1 LTR MaLR 1 378 0 5 1004 802 81 8 8 chr1 55020349 55020474 -142174958 + (CA)n Simple_repeat Simple_repeat 2 126 0 5 1004 496 275 0 0 chr1 55020512 55020621 -142174811 + PB1D9 SINE Alu 2 110 -10 5 1004 24 32 0 0 chr1 55020621 55020652 -142174780 + AT_rich Low_complexity Low_complexity 1 31 0 5 1004 790 148 1 29 chr1 55021027 55021185 -142174247 + B1_Mur3 SINE Alu 1 149 0 5 1004 255 322 12 93 chr1 55021207 55021368 -142174064 + B1F SINE Alu 2 149 0 5 1004 207 67 33 0 chr1 55021733 55021763 -142173669 + (GGGGA)n Simple_repeat Simple_repeat 4 34 0 6 1004 866 184 0 6 chr1 55021763 55021943 -142173489 + GA-rich Low_complexity Low_complexity 1 179 0 6 1004 1464 54 16 5 chr1 55022005 55022190 -142173242 - B2_Mm2 SINE B2 -7 188 2 6 1004 614 272 53 6 chr1 55022966 55023136 -142172296 + ID_B1 SINE B4 5 182 -42 6 1004 250 235 98 171 chr1 55023454 55023467 -142171965 - PB1 SINE Alu -4 123 113 6 1004 180 0 0 0 chr1 55023467 55023487 -142171945 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 6 1004 341 202 22 150 chr1 55023487 55023596 -142171836 - PB1D10 SINE Alu -15 112 10 6 1004 3970 152 44 132 chr1 55023616 55024186 -142171246 - RMER19B LTR ERVK -12 890 415 6 1004 3398 51 0 0 chr1 55024186 55024596 -142170836 - L1_Mus1 LINE L1 -1 6566 6157 6 1004 3970 152 44 132 chr1 55024596 55024613 -142170819 - RMER19B LTR ERVK -488 414 401 6 1004 1988 176 60 134 chr1 55024613 55025218 -142170214 - RLTR31_Mm LTR ERVK 0 561 2 6 1004 3970 152 44 132 chr1 55025218 55025604 -142169828 - RMER19B LTR ERVK -502 400 2 6 1004 282 345 0 87 chr1 55025663 55025755 -142169677 + PB1D10 SINE Alu 1 84 -33 6 1004 204 216 0 0 chr1 55025772 55025823 -142169609 + GA-rich Low_complexity Low_complexity 2 52 0 7 1004 968 243 77 134 chr1 55025892 55026014 -142169418 - Lx8 LINE L1 -16 7457 7327 7 1004 874 187 0 7 chr1 55026014 55026165 -142169267 + B1_Mur4 SINE Alu 1 150 0 7 1004 968 243 77 134 chr1 55026165 55026521 -142168911 - Lx8 LINE L1 -147 7326 7006 7 1004 198 103 0 0 chr1 55027289 55027318 -142168114 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 7 1004 400 209 81 11 chr1 55027405 55027492 -142167940 + PB1D10 SINE Alu 16 108 -9 7 1004 290 137 0 56 chr1 55027447 55027501 -142167931 + ID_B1 SINE B4 174 224 0 6 1004 1088 0 16 0 chr1 55027643 55027770 -142167662 + (TCTCCC)n Simple_repeat Simple_repeat 6 134 0 7 1004 1277 191 224 65 chr1 55028279 55028739 -142166693 + MT2A LTR ERVL 1 533 0 7 1004 310 294 125 26 chr1 55029350 55029489 -142165943 + Lx9 LINE L1 7339 7501 -143 7 1004 594 103 0 0 chr1 55029489 55029576 -142165856 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 7 1004 310 294 125 26 chr1 55029576 55029708 -142165724 + Lx9 LINE L1 7502 7637 -7 7 1004 808 280 30 26 chr1 55029777 55030081 -142165351 + L1M2 LINE L1 4400 4704 -1439 7 1004 795 217 23 101 chr1 55030100 55030407 -142165025 - RLTRETN_Mm LTR ERVK -39 283 1 8 1004 711 290 37 24 chr1 55030409 55030706 -142164726 + L1M2 LINE L1 4690 5046 -1097 7 1004 2130 246 24 67 chr1 55030821 55031035 -142164397 - Lx7 LINE L1 -943 6753 6552 8 1004 2056 146 24 68 chr1 55031035 55031418 -142164014 + ORR1B2 LTR MaLR 2 367 0 8 1004 2130 246 24 67 chr1 55031418 55031757 -142163675 - Lx7 LINE L1 -1145 6551 6224 8 1004 1662 202 50 81 chr1 55031757 55032278 -142163154 - RLTR16 LTR ERVK 0 505 1 8 1004 6584 150 53 25 chr1 55032297 55033898 -142161534 - MYSERV16_I-int LTR ERVK -78 2764 428 8 1004 1365 87 0 53 chr1 55033898 55034104 -142161328 + B2_Mm2 SINE B2 1 195 0 8 1004 2616 197 102 60 chr1 55034104 55034268 -142161164 - MYSERV16_I-int LTR ERVK -1899 427 278 8 1004 615 245 61 74 chr1 55034278 55034574 -142160858 - RMER3D-int LTR ERVK -1464 1378 1087 8 1004 1137 69 7 0 chr1 55034744 55034889 -142160543 - B1_Mus1 SINE Alu -2 146 1 8 1004 1374 106 16 0 chr1 55034889 55035076 -142160356 - B2_Mm2 SINE B2 -2 193 3 8 1004 26 30 0 0 chr1 55035592 55035625 -142159807 + AT_rich Low_complexity Low_complexity 1 33 0 8 1004 198 338 0 13 chr1 55035691 55035766 -142159666 + MIR SINE MIR 20 93 -169 9 1004 1216 54 7 0 chr1 55035781 55035928 -142159504 - B1_Mus1 SINE Alu 0 148 1 9 1004 446 296 9 0 chr1 55036752 55036860 -142158572 + PB1D10 SINE Alu 1 109 -8 9 1004 2736 102 20 5 chr1 55037158 55037550 -142157882 - MTA_Mm LTR MaLR 0 400 3 9 1004 7503 86 35 10 chr1 55037552 55038624 -142156808 - MTA_Mm-int LTR MaLR 0 1098 1 9 1004 2921 64 18 13 chr1 55038624 55039018 -142156414 - MTA_Mm LTR MaLR 0 396 1 9 1004 1187 75 0 0 chr1 55039312 55039458 -142155974 + B1_Mus2 SINE Alu 2 147 0 9 1004 218 253 114 0 chr1 55039492 55039571 -142155861 - MIRb SINE MIR -150 118 31 9 1004 273 311 91 76 chr1 55039612 55039810 -142155622 + Lx8 LINE L1 7265 7465 -8 9 1004 291 219 31 0 chr1 55040119 55040183 -142155249 + ID4_ SINE ID 18 83 0 9 1004 413 175 244 9 chr1 55040388 55040503 -142154929 + RLTR18B LTR ERVK 31 172 -340 9 1004 547 199 149 67 chr1 55040514 55040708 -142154724 + RLTR18B LTR ERVK 300 509 -3 9 1004 249 281 167 0 chr1 55040734 55040848 -142154584 - RLTR40 LTR ERVK -16 801 669 9 1004 880 230 74 25 chr1 55040847 55041151 -142154281 - RLTR40 LTR ERVK -413 404 50 9 1004 264 247 91 0 chr1 55041414 55041491 -142153941 + B1F1 SINE Alu 21 104 -45 1 1004 272 280 108 0 chr1 55041795 55041888 -142153544 - PB1D10 SINE Alu -14 103 1 1 1004 28 29 0 0 chr1 55042073 55042108 -142153324 + AT_rich Low_complexity Low_complexity 1 35 0 1 1004 23 0 0 0 chr1 55042503 55042526 -142152906 + AT_rich Low_complexity Low_complexity 1 23 0 1 1004 555 203 32 10 chr1 55044428 55044560 -142150872 + B1_Mur1 SINE Alu 7 149 0 1 1004 183 80 0 0 chr1 55044631 55044656 -142150776 + (CTAAT)n Simple_repeat Simple_repeat 3 27 0 1 1004 246 314 0 67 chr1 55046138 55046213 -142149219 - ID4_ SINE ID -7 76 7 1 1004 241 230 184 0 chr1 55046232 55046319 -142149113 - PB1 SINE Alu -4 123 21 1 1004 696 284 18 31 chr1 55046611 55046833 -142148599 + ID_B1 SINE B4 4 222 -2 1 1004 1314 173 141 10 chr1 55047592 55047896 -142147536 + Lx3C LINE L1 6633 6976 0 1 1004 641 238 140 70 chr1 55048392 55048465 -142146967 - MTD LTR MaLR -14 405 310 1 1004 873 156 20 79 chr1 55048465 55048667 -142146765 - B2_Mm2 SINE B2 -4 191 2 1 1004 641 259 138 58 chr1 55048667 55048951 -142146481 - MTD LTR MaLR -79 340 1 1 1004 1156 75 0 20 chr1 55049119 55049269 -142146163 + B1_Mus1 SINE Alu 1 147 -1 1 1004 221 156 0 43 chr1 55049351 55049388 -142146044 + A-rich Low_complexity Low_complexity 1 37 0 1 1004 873 250 9 23 chr1 55049388 55049605 -142145827 + B3 SINE B2 2 215 -1 1 1004 883 218 10 35 chr1 55049791 55049991 -142145441 + B3 SINE B2 16 210 -6 1 125 1183 285 76 16 chr1 55050012 55050379 -142145053 - Lx8 LINE L1 -144 7329 6941 1 1005 412 274 30 109 chr1 55050381 55050483 -142144949 + Lx8 LINE L1 6756 6840 -633 1 1005 395 205 203 34 chr1 55050483 55050660 -142144772 - B3 SINE B2 -7 209 3 1 1005 412 274 30 109 chr1 55050660 55050758 -142144674 + Lx8 LINE L1 6841 6940 -533 1 1005 628 205 19 93 chr1 55050774 55050935 -142144497 + B1_Mur2 SINE Alu 1 149 0 1 1005 278 262 16 0 chr1 55051380 55051441 -142143991 - ID4 SINE ID -2 81 20 1 1005 365 249 24 32 chr1 55051554 55051665 -142143767 + B1_Mur1 SINE Alu 9 149 0 1 1005 1532 43 5 0 chr1 55051717 55051902 -142143530 + B2_Mm1a SINE B2 1 186 -7 1 1005 737 120 78 31 chr1 55051913 55052042 -142143390 + B1_Mur4 SINE Alu 1 135 -15 1 1005 24 0 0 0 chr1 55053238 55053262 -142142170 + AT_rich Low_complexity Low_complexity 1 24 0 1 1005 1300 91 23 6 chr1 55054254 55054431 -142141001 + B2_Mm2 SINE B2 2 181 -14 1 1005 248 112 377 10 chr1 55054449 55054547 -142140885 + B2_Mm2 SINE B2 55 188 -7 1 1005 314 298 82 8 chr1 55054703 55054825 -142140607 + RSINE1 SINE B4 4 134 -31 1 1005 334 269 0 0 chr1 55055367 55055445 -142139987 + PB1D10 SINE Alu 40 117 0 1 1005 324 312 96 14 chr1 55055450 55055596 -142139836 + RSINE1 SINE B4 1 158 -7 1 1005 580 228 99 25 chr1 55055688 55055850 -142139582 + B3 SINE B2 43 216 0 1 1005 1164 57 6 0 chr1 55055922 55056079 -142139353 + B2_Mm1a SINE B2 1 158 -35 1 1005 200 34 0 33 chr1 55056079 55056109 -142139323 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1005 234 0 0 0 chr1 55056117 55056143 -142139289 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 1 1005 340 238 195 47 chr1 55056170 55056298 -142139134 + B1_Mur2 SINE Alu 2 148 -1 1 1005 216 0 0 0 chr1 55057953 55057977 -142137455 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1005 274 87 152 0 chr1 55058076 55058122 -142137310 + B1F1 SINE Alu 70 122 -27 1 1005 363 283 32 40 chr1 55058616 55058741 -142136691 + RSINE1 SINE B4 4 127 -38 1 1005 515 230 19 86 chr1 55058863 55059025 -142136407 + RSINE1 SINE B4 3 153 -12 1 1005 301 268 85 54 chr1 55059436 55059566 -142135866 + B1F SINE Alu 5 138 -11 1 1005 545 195 30 68 chr1 55059667 55059799 -142135633 + B1_Mur2 SINE Alu 23 149 0 1 1005 849 118 101 22 chr1 55059799 55059937 -142135495 + B1_Mur4 SINE Alu 1 149 -1 1 1005 337 210 12 47 chr1 55061870 55061955 -142133477 + B1_Mur1 SINE Alu 61 142 -7 1 1005 282 196 0 0 chr1 55062251 55062302 -142133130 - B3A SINE B2 -147 51 1 1 1005 531 200 10 0 chr1 55062329 55062429 -142133003 - B1_Mur1 SINE Alu -9 140 40 1 1005 209 284 0 0 chr1 55062940 55063007 -142132425 + A-rich Low_complexity Low_complexity 1 67 0 1 1005 367 303 34 52 chr1 55063471 55063704 -142131728 + L1MB4 LINE L1 5914 6142 -38 1 1005 189 0 0 0 chr1 55063714 55063735 -142131697 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1005 21 36 0 0 chr1 55063786 55063814 -142131618 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 21 0 0 0 chr1 55063880 55063901 -142131531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 567 242 25 25 chr1 55063930 55064091 -142131341 - RSINE1 SINE B4 -2 163 3 1 1005 716 169 24 0 chr1 55064781 55064905 -142130527 + B3 SINE B2 3 129 -87 1 1005 388 270 67 30 chr1 55065069 55065233 -142130199 + RLTR42-int LTR ERVK 1222 1391 -4131 1 1005 986 114 85 6 chr1 55065253 55065414 -142130018 + B2_Mm2 SINE B2 2 177 -18 1 1005 495 0 0 0 chr1 55065414 55065469 -142129963 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 1 1005 986 114 85 6 chr1 55065469 55065484 -142129948 + B2_Mm2 SINE B2 178 192 -3 1 1005 270 0 0 0 chr1 55065528 55065558 -142129874 + (TCCCC)n Simple_repeat Simple_repeat 4 33 0 1 1005 297 0 0 0 chr1 55065559 55065592 -142129840 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1005 1100 50 7 28 chr1 55065593 55065737 -142129695 - B1_Mus2 SINE Alu -6 141 1 1 1005 1126 107 35 6 chr1 55065739 55065908 -142129524 - B2_Mm1a SINE B2 -19 174 1 1 1005 28 0 0 0 chr1 55066056 55066084 -142129348 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 402 257 28 19 chr1 55066479 55066586 -142128846 + B1_Mur1 SINE Alu 42 149 0 1 1005 254 150 0 0 chr1 55066583 55066623 -142128809 + B4 SINE B4 81 120 -172 1 1005 192 77 0 0 chr1 55066626 55066652 -142128780 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1005 379 371 0 15 chr1 55066663 55066797 -142128635 - RSINE1 SINE B4 0 165 34 1 1005 453 176 129 0 chr1 55067012 55067097 -142128335 + B1_Mus2 SINE Alu 44 139 -8 1 1005 225 0 0 0 chr1 55067181 55067206 -142128226 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1005 499 268 55 60 chr1 55067314 55067497 -142127935 + B3A SINE B2 11 192 -6 1 1005 561 86 0 0 chr1 55067595 55067676 -142127756 + B1_Mus2 SINE Alu 1 81 -66 1 1005 701 169 7 0 chr1 55067789 55067925 -142127507 + GA-rich Low_complexity Low_complexity 2 138 0 1 1005 1208 68 0 0 chr1 55067972 55068119 -142127313 + B1_Mus1 SINE Alu 2 148 0 1 1005 183 152 0 0 chr1 55068119 55068165 -142127267 + A-rich Low_complexity Low_complexity 1 46 0 1 1005 24 0 0 0 chr1 55068477 55068501 -142126931 + AT_rich Low_complexity Low_complexity 1 24 0 1 1005 216 42 19 77 chr1 55068547 55068599 -142126833 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1005 331 141 138 21 chr1 55069316 55069410 -142126022 + PB1D9 SINE Alu 9 113 -7 1 1005 973 128 53 43 chr1 55069440 55069628 -142125804 + B2_Mm2 SINE B2 2 191 -4 1 1005 392 263 119 8 chr1 55069906 55070040 -142125392 + B1F1 SINE Alu 1 149 0 1 1005 402 248 84 46 chr1 55070189 55070320 -142125112 + B1F SINE Alu 12 147 -2 1 1005 319 255 115 58 chr1 55070379 55070483 -142124949 + RSINE1 SINE B4 56 165 0 1 1005 416 242 44 0 chr1 55070807 55070898 -142124534 + PB1D9 SINE Alu 18 112 -8 1 1005 1116 87 0 0 chr1 55070908 55071046 -142124386 + B1_Mm SINE Alu 1 138 -9 1 1005 667 150 54 54 chr1 55071070 55071218 -142124214 + B1_Mus1 SINE Alu 1 148 0 1 1005 603 232 21 42 chr1 55074287 55074431 -142121001 + B1F2 SINE Alu 1 141 -8 1 1005 186 43 0 0 chr1 55074439 55074462 -142120970 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1005 1273 122 0 5 chr1 55074471 55074660 -142120772 + B2_Mm2 SINE B2 1 188 -7 1 1005 1070 257 204 19 chr1 55074800 55075261 -142120171 + Lx8 LINE L1 6928 7473 0 1 1005 231 219 0 0 chr1 55075304 55075345 -142120087 + B1F2 SINE Alu 1 41 -108 1 1005 272 232 116 0 chr1 55075739 55075808 -142119624 + B1_Mus1 SINE Alu 13 89 -59 1 1005 225 0 0 0 chr1 55075888 55075913 -142119519 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1005 288 0 0 0 chr1 55075913 55075944 -142119488 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1005 782 80 131 0 chr1 55076560 55076697 -142118735 + B2_Mm2 SINE B2 32 186 -9 1 1005 238 240 83 28 chr1 55076754 55076837 -142118595 - B4 SINE B4 -67 98 10 1 1005 271 256 171 0 chr1 55077426 55077508 -142117924 + ID_B1 SINE B4 2 97 -127 1 1005 1165 54 7 0 chr1 55077822 55077969 -142117463 + B1_Mus1 SINE Alu 1 148 0 1 1005 349 217 53 32 chr1 55077998 55078093 -142117339 + PB1D9 SINE Alu 24 120 0 1 1005 515 263 29 14 chr1 55078146 55078285 -142117147 + B1F2 SINE Alu 1 141 -8 1 1005 688 44 257 0 chr1 55078523 55078636 -142116796 - B1_Mm SINE Alu 0 147 6 1 1005 459 223 72 65 chr1 55078811 55078950 -142116482 + B1_Mur1 SINE Alu 10 149 0 1 1005 484 216 9 26 chr1 55079103 55079217 -142116215 + ID_B1 SINE B4 113 224 0 1 1005 1100 80 0 0 chr1 55079333 55079470 -142115962 + B1_Mus2 SINE Alu 1 137 -10 1 1005 207 0 0 0 chr1 55079470 55079493 -142115939 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1005 26 0 0 0 chr1 55079493 55079519 -142115913 + AT_rich Low_complexity Low_complexity 1 26 0 1 1005 310 274 327 23 chr1 55079683 55079844 -142115588 + B4A SINE B4 2 216 -76 1 1005 1128 75 0 0 chr1 55079844 55079990 -142115442 + B1_Mus2 SINE Alu 2 147 0 2 1005 242 246 189 33 chr1 55079990 55080059 -142115373 + B4A SINE B4 217 292 0 1 1005 237 222 0 31 chr1 55080068 55080133 -142115299 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 2 1005 217 333 54 77 chr1 55080349 55080479 -142114953 + ID_B1 SINE B4 6 132 -92 2 1005 220 281 29 23 chr1 55080436 55080522 -142114910 + B1F2 SINE Alu 9 95 -52 2 1005 905 145 0 52 chr1 55080522 55080675 -142114757 + B1_Mur3 SINE Alu 5 149 0 2 1005 195 114 0 0 chr1 55080698 55080733 -142114699 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2 1005 267 222 32 0 chr1 55080805 55080868 -142114564 + RSINE1 SINE B4 10 74 -91 2 1005 386 328 0 0 chr1 55081243 55081359 -142114073 + RSINE1 SINE B4 15 130 -35 2 1005 22 0 0 0 chr1 55081364 55081386 -142114046 + AT_rich Low_complexity Low_complexity 1 22 0 2 1005 420 236 173 0 chr1 55081401 55081528 -142113904 + B1_Mur3 SINE Alu 1 149 0 2 1005 378 130 51 13 chr1 55081530 55081608 -142113824 + B1_Mur3 SINE Alu 68 148 -1 2 1005 28 29 0 0 chr1 55081692 55081727 -142113705 + AT_rich Low_complexity Low_complexity 1 35 0 2 1005 829 50 0 24 chr1 55081764 55081888 -142113544 + B1_Mus2 SINE Alu 27 147 0 2 1005 248 98 0 76 chr1 55081950 55082016 -142113416 + GA-rich Low_complexity Low_complexity 4 64 0 2 1005 774 195 199 11 chr1 55082037 55082213 -142113219 + B3 SINE B2 2 210 -6 2 1005 764 114 52 15 chr1 55082587 55082721 -142112711 + B2_Mm2 SINE B2 23 161 -34 2 1005 508 233 21 57 chr1 55082753 55082894 -142112538 + B1_Mur2 SINE Alu 14 149 0 2 1005 549 145 104 30 chr1 55084487 55084622 -142110810 + B1_Mm SINE Alu 3 147 0 2 1005 1172 41 7 7 chr1 55084624 55084772 -142110660 + B1_Mus1 SINE Alu 1 148 0 2 1005 1108 36 58 0 chr1 55085578 55085716 -142109716 + B1_Mus2 SINE Alu 2 147 0 2 1005 601 277 57 17 chr1 55085845 55086021 -142109411 + ORR1D2 LTR MaLR 73 255 -115 2 1005 808 116 0 42 chr1 55086233 55086377 -142109055 + B1_Mus2 SINE Alu 10 147 0 2 1005 1018 223 0 18 chr1 55086384 55086603 -142108829 + B3 SINE B2 1 215 -1 2 1005 768 170 0 20 chr1 55086750 55086900 -142108532 - B1_Mus2 SINE Alu 0 147 1 2 1005 572 170 11 0 chr1 55087317 55087411 -142108021 - B1_Mur2 SINE Alu -49 100 6 2 1005 737 266 5 87 chr1 55087412 55087491 -142107941 - B3 SINE B2 -17 199 128 2 1005 752 85 246 0 chr1 55087491 55087609 -142107823 + B1_Mus1 SINE Alu 2 148 0 2 1005 737 266 5 87 chr1 55087609 55087735 -142107697 - B3 SINE B2 -89 127 11 2 1005 244 132 14 81 chr1 55087818 55087892 -142107540 + T-rich Low_complexity Low_complexity 3 71 0 2 1005 601 222 27 40 chr1 55087901 55088051 -142107381 - B1_Mur2 SINE Alu 0 149 2 2 1005 221 242 16 16 chr1 55088101 55088164 -142107268 + G-rich Low_complexity Low_complexity 2 64 0 2 1005 810 184 14 0 chr1 55088457 55088604 -142106828 - B1_Mur1 SINE Alu 0 149 1 2 1005 368 75 0 0 chr1 55089007 55089060 -142106372 + RLTR15 LTR ERVK 1 53 -306 2 1005 1535 127 38 24 chr1 55089095 55089386 -142106046 + RLTR15 LTR ERVK 50 344 -15 2 1005 416 54 0 0 chr1 55089421 55089477 -142105955 + B2_Mm2 SINE B2 2 57 -138 2 1005 287 141 319 9 chr1 55089486 55089599 -142105833 - B2_Mm2 SINE B2 -1 194 47 2 1005 616 112 10 0 chr1 55089646 55089744 -142105688 - B2_Mm1t SINE B2 -14 179 81 2 1005 252 98 0 0 chr1 55089740 55089781 -142105651 - B2_Mm2 SINE B2 -153 42 2 2 1005 808 139 7 0 chr1 55089781 55089915 -142105517 + B2_Mm2 SINE B2 49 183 -12 2 1005 954 90 0 0 chr1 55089916 55090050 -142105382 + (GAA)n Simple_repeat Simple_repeat 1 134 0 2 1005 582 238 56 27 chr1 55090051 55090255 -142105177 + RLTR19-int LTR ERVK 2657 2854 -3283 2 1005 1177 49 67 0 chr1 55090260 55090424 -142105008 + B2_Mm2 SINE B2 14 188 -7 2 1005 437 272 66 22 chr1 55090430 55090703 -142104729 + RLTR19-int LTR ERVK 2648 2888 -350 2 1005 1957 136 3 107 chr1 55090732 55091178 -142104254 + ORR1B1 LTR MaLR 2 394 0 2 1005 339 222 43 43 chr1 55091325 55091419 -142104013 + RLTR19-int LTR ERVK 4228 4321 -1816 2 1005 301 48 24 0 chr1 55091441 55091483 -142103949 + ORR1B1 LTR MaLR 352 394 0 2 1005 930 75 224 0 chr1 55091908 55092055 -142103377 + B2_Mm2 SINE B2 2 181 -14 2 1005 411 73 0 0 chr1 55092087 55092142 -142103290 + B2_Mm2 SINE B2 47 101 -94 2 1005 2152 157 99 38 chr1 55092303 55092799 -142102633 - RLTR11A LTR ERVK -2 526 1 2 1005 350 115 24 0 chr1 55093435 55093498 -142101934 - B2_Mm2 SINE B2 -126 67 2 2 1005 216 0 0 0 chr1 55093799 55093823 -142101609 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1005 1845 166 25 20 chr1 55093828 55093876 -142101556 + RLTR15 LTR ERVK 1 48 -311 2 1005 225 0 0 0 chr1 55093876 55093901 -142101531 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1005 1845 166 25 20 chr1 55093901 55094209 -142101223 + RLTR15 LTR ERVK 49 358 -1 2 1005 324 235 90 20 chr1 55094466 55094566 -142100866 - RLTR23 LTR ERV1 0 430 324 2 1005 866 258 128 55 chr1 55094561 55094714 -142100718 + RLTR22_Mur LTR ERVK 357 512 -1336 2 1005 1425 57 17 0 chr1 55094714 55094889 -142100543 + B2_Mm2 SINE B2 1 178 -17 2 1005 597 49 0 0 chr1 55094889 55094970 -142100462 + (GAA)n Simple_repeat Simple_repeat 3 83 0 2 1005 866 258 128 55 chr1 55094970 55095237 -142100195 + RLTR22_Mur LTR ERVK 513 808 -1040 2 1005 375 250 16 41 chr1 55095290 55095411 -142100021 + RLTR22_Mur LTR ERVK 1606 1723 -125 2 1005 215 272 11 32 chr1 55095925 55096020 -142099412 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 2 1005 3866 56 56 2 chr1 55096021 55096507 -142098925 - RLTR1B LTR ERV1 0 512 1 2 1005 1462 74 10 10 chr1 55096584 55096776 -142098656 - B2_Mm1t SINE B2 -1 192 1 2 1005 4386 158 23 116 chr1 55098074 55098900 -142096532 + RMER19B LTR ERVK 19 765 -137 2 1005 1375 54 38 5 chr1 55098900 55099086 -142096346 + B2_Mm2 SINE B2 1 192 -3 2 1005 4386 158 23 116 chr1 55099086 55099232 -142096200 + RMER19B LTR ERVK 766 900 -2 2 1005 1958 182 11 20 chr1 55099249 55099602 -142095830 + RodERV21-int LTR ERV1 15 364 -4627 2 1005 1543 153 69 20 chr1 55099604 55099910 -142095522 - ORR1A4 LTR MaLR -8 321 1 2 1005 572 301 38 82 chr1 55099910 55100228 -142095204 + RodERV21-int LTR ERV1 372 675 -4316 2 1005 2002 139 29 64 chr1 55100228 55100636 -142094796 + RMER6B LTR ERVK 66 459 -2 2 1005 3552 25 0 0 chr1 55101289 55101685 -142093747 + MTA_Mm LTR MaLR 1 396 0 2 1005 189 107 0 0 chr1 55101981 55102009 -142093423 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1005 828 183 14 0 chr1 55102010 55102152 -142093280 - B1_Mus1 SINE Alu 0 148 5 2 1005 2437 190 121 15 chr1 55102314 55102833 -142092599 + RodERV21-int LTR ERV1 3900 4473 -518 2 1005 1237 92 11 0 chr1 55102833 55103018 -142092414 - ORR1A4 LTR MaLR 0 329 143 2 1005 730 133 0 0 chr1 55103018 55103131 -142092301 + RLTR11A2 LTR ERVK 1 113 -414 2 1005 951 138 91 33 chr1 55103130 55103340 -142092092 + RLTR11A2 LTR ERVK 306 527 0 2 1005 993 139 0 0 chr1 55103340 55103488 -142091944 - ORR1A4 LTR MaLR -178 148 1 2 1005 7639 125 65 72 chr1 55103488 55105087 -142090345 - ORR1A4-int LTR MaLR 0 1963 376 2 1005 1206 55 7 0 chr1 55105287 55105433 -142089999 + B1_Mm SINE Alu 1 147 0 2 1005 1087 125 54 11 chr1 55105461 55105647 -142089785 - B2_Mm2 SINE B2 -1 194 1 2 1005 277 250 0 0 chr1 55106327 55106387 -142089045 + B4 SINE B4 214 273 -19 2 1005 804 96 0 0 chr1 55106398 55106513 -142088919 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1005 257 59 0 0 chr1 55106576 55106610 -142088822 - ORR1D1 LTR MaLR -4 380 347 2 1005 246 274 16 0 chr1 55106700 55106762 -142088670 + GA-rich Low_complexity Low_complexity 1 63 0 2 1005 665 180 95 12 chr1 55106762 55106931 -142088501 - ORR1D1 LTR MaLR -191 183 1 2 1005 240 304 0 0 chr1 55107368 55107424 -142088008 + AluG_3 SINE Alu 158 213 -98 2 1005 689 165 0 0 chr1 55107565 55107686 -142087746 - B1_Mur4 SINE Alu -6 144 24 2 1005 288 0 0 0 chr1 55107793 55107825 -142087607 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1005 460 290 72 0 chr1 55107827 55107965 -142087467 - B3A SINE B2 -47 151 4 2 1005 1570 155 44 88 chr1 55108111 55108473 -142086959 - ORR1B1 LTR MaLR -8 386 41 2 1005 368 267 84 52 chr1 55108665 55108819 -142086613 + RSINE1 SINE B4 5 163 -2 2 1005 23 33 0 0 chr1 55108828 55108858 -142086574 + AT_rich Low_complexity Low_complexity 1 30 0 2 1005 400 236 55 28 chr1 55110412 55110521 -142084911 + PB1D7 SINE Alu 9 120 0 2 1005 367 214 50 20 chr1 55110633 55110733 -142084699 + B1_Mur1 SINE Alu 47 149 0 2 1005 231 203 156 0 chr1 55111142 55111206 -142084226 - ID4 SINE ID -9 74 1 2 1005 244 255 0 0 chr1 55111484 55111535 -142083897 - ID4 SINE ID -22 61 11 2 1005 498 205 51 43 chr1 55111538 55111655 -142083777 - PB1D9 SINE Alu 0 120 3 2 1005 267 281 45 0 chr1 55111679 55111768 -142083664 + B3A SINE B2 88 180 -18 2 1005 353 243 9 61 chr1 55111820 55111934 -142083498 + PB1D10 SINE Alu 10 117 0 2 1005 447 200 0 0 chr1 55111940 55112028 -142083404 + B1_Mur1 SINE Alu 41 128 -21 2 1005 606 157 0 53 chr1 55112151 55112265 -142083167 - B1_Mur2 SINE Alu -1 148 41 2 1005 226 211 0 123 chr1 55112214 55112279 -142083153 - 4.5SRNA scRNA scRNA -8 86 30 2 1005 384 242 77 0 chr1 55112477 55112568 -142082864 - Lx8 LINE L1 -256 7217 7120 2 1005 1047 114 42 32 chr1 55112569 55112759 -142082673 - B2_Mm2 SINE B2 -3 192 1 2 1005 407 265 65 52 chr1 55112870 55113025 -142082407 - RLTR11B LTR ERVK -20 433 277 2 1005 805 244 29 44 chr1 55113091 55113372 -142082060 - RLTR11B LTR ERVK -168 273 1 2 1005 435 230 2 5 chr1 55113372 55113482 -142081950 - B3A SINE B2 -75 120 15 2 1005 452 262 56 14 chr1 55113495 55113638 -142081794 - Lx8 LINE L1 -358 7115 6967 2 1005 1607 259 22 26 chr1 55113650 55114146 -142081286 - RLTR16 LTR ERVK -6 499 6 2 1005 451 253 0 0 chr1 55114153 55114244 -142081188 - Lx8 LINE L1 -523 6950 6860 2 1005 2940 124 23 47 chr1 55114278 55114834 -142080598 - RMER6A LTR ERVK 0 756 214 2 1005 1240 229 132 9 chr1 55114865 55115191 -142080241 - Lx8 LINE L1 -634 6839 6474 2 1005 1252 48 0 0 chr1 55115196 55115343 -142080089 + B1_Mus1 SINE Alu 2 148 0 2 1005 465 66 0 0 chr1 55115343 55115404 -142080028 + (A)n Simple_repeat Simple_repeat 1 61 0 2 1005 345 182 29 43 chr1 55115404 55115473 -142079959 - Lx8 LINE L1 -990 6483 6416 2 1005 367 262 224 6 chr1 55115742 55115903 -142079529 - RLTR26 LTR ERVK -225 417 222 2 1005 226 274 68 14 chr1 55116182 55116256 -142079176 - B3A SINE B2 -118 80 3 2 1005 261 276 46 0 chr1 55116327 55116414 -142079018 - ID_B1 SINE B4 0 224 134 2 1005 353 296 7 7 chr1 55116453 55116596 -142078836 - B1F2 SINE Alu -6 143 1 2 1005 384 259 114 21 chr1 55116736 55116861 -142078571 - PB1 SINE Alu -2 125 3 3 1005 249 347 87 24 chr1 55116983 55117110 -142078322 - RSINE1 SINE B4 -29 136 2 3 1005 549 259 22 33 chr1 55117142 55117322 -142078110 - B3A SINE B2 -16 182 5 3 1005 1083 76 45 0 chr1 55118416 55118573 -142076859 + B2_Mm2 SINE B2 2 165 -30 3 1005 474 176 22 0 chr1 55118786 55118877 -142076555 - PB1D9 SINE Alu -19 101 9 3 1005 285 281 24 12 chr1 55118803 55118886 -142076546 - B4 SINE B4 -123 169 86 3 1005 459 239 9 17 chr1 55118991 55119106 -142076326 - B1F1 SINE Alu -29 120 7 3 1005 1865 180 46 62 chr1 55119200 55119590 -142075842 - ORR1C2 LTR MaLR 0 384 1 3 1005 361 244 192 47 chr1 55119743 55119915 -142075517 - B3 SINE B2 -3 213 17 3 1005 348 186 0 17 chr1 55120090 55120150 -142075282 - ID SINE ID -164 60 2 3 1005 282 143 0 0 chr1 55120154 55120203 -142075229 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1005 276 292 39 110 chr1 55120205 55120332 -142075100 - ID_B1 SINE B4 -20 204 87 3 1005 843 170 7 28 chr1 55120335 55120480 -142074952 - B1_Mur1 SINE Alu -6 143 2 3 1005 369 141 0 0 chr1 55120609 55120694 -142074738 + (CAGA)n Simple_repeat Simple_repeat 4 88 0 3 1005 218 370 0 0 chr1 55120751 55120824 -142074608 - PB1D10 SINE Alu -40 77 5 3 1005 289 303 64 0 chr1 55121312 55121421 -142074011 + PB1D9 SINE Alu 5 120 0 3 1005 728 213 80 6 chr1 55121587 55121762 -142073670 + B3 SINE B2 8 195 -21 3 1005 398 267 117 33 chr1 55121909 55122029 -142073403 - B1_Mur1 SINE Alu 0 150 20 3 1005 189 196 0 0 chr1 55122124 55122175 -142073257 + T-rich Low_complexity Low_complexity 1 51 0 3 1005 695 242 22 6 chr1 55122381 55122560 -142072872 + B3 SINE B2 7 188 -28 3 1005 640 298 44 0 chr1 55122716 55122921 -142072511 + B4A SINE B4 4 217 -75 3 1005 433 299 5 111 chr1 55122922 55123121 -142072311 - MTEa LTR MaLR -14 365 188 3 1005 289 310 59 12 chr1 55123965 55124050 -142071382 - MTEa LTR MaLR -163 216 128 3 1005 404 272 54 39 chr1 55124576 55124706 -142070726 - B1F SINE Alu -6 143 12 3 1005 785 175 42 0 chr1 55124757 55124900 -142070532 - B1_Mur2 SINE Alu 0 149 1 3 1005 851 227 70 28 chr1 55125028 55125241 -142070191 - ID_B1 SINE B4 -2 222 1 3 1005 237 226 32 0 chr1 55125323 55125385 -142070047 + ID4_ SINE ID 2 65 -18 3 1005 285 98 0 0 chr1 55125390 55125431 -142070001 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 3 1005 1463 72 0 10 chr1 55125433 55125629 -142069803 - B2_Mm2 SINE B2 0 195 2 3 1005 357 24 0 0 chr1 55126113 55126155 -142069277 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 1005 1284 25 0 0 chr1 55126155 55126315 -142069117 - B2_Mm1a SINE B2 -33 160 1 3 1005 590 208 23 31 chr1 55126666 55126795 -142068637 + B1_Mur1 SINE Alu 2 129 -20 3 1005 228 35 0 0 chr1 55126805 55126834 -142068598 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 3 1005 393 308 0 0 chr1 55127045 55127152 -142068280 + PB1D10 SINE Alu 11 117 0 3 1005 331 265 73 110 chr1 55127185 55127376 -142068056 + L1MC4a LINE L1 7661 7844 -38 3 1005 499 285 0 0 chr1 55127401 55127524 -142067908 - RSINE1 SINE B4 -32 133 11 3 1005 740 188 8 0 chr1 55127545 55127678 -142067754 + B1_Mus2 SINE Alu 1 134 -13 3 1005 180 0 0 0 chr1 55127678 55127698 -142067734 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1005 254 256 130 89 chr1 55127719 55127734 -142067698 + B4A SINE B4 83 161 -131 3 1005 453 248 0 58 chr1 55127734 55127854 -142067578 + PB1 SINE Alu 13 125 -2 3 1005 254 256 130 89 chr1 55127854 55127865 -142067567 + B4A SINE B4 162 234 -58 3 1005 265 271 0 17 chr1 55128172 55128232 -142067200 - ID4_ SINE ID -20 63 5 3 1005 378 258 31 10 chr1 55128340 55128438 -142066994 - B1F SINE Alu -32 117 18 3 1005 730 117 26 64 chr1 55129571 55129727 -142065705 - B1_Mur4 SINE Alu 0 150 1 3 1005 512 211 213 15 chr1 55129799 55129996 -142065436 - MTD LTR MaLR -38 381 146 3 1005 293 272 76 19 chr1 55130604 55130709 -142064723 - B1F SINE Alu -31 118 8 3 1005 847 247 35 65 chr1 55130707 55130783 -142064649 - B4A SINE B4 -10 282 218 3 1005 3719 33 0 0 chr1 55130783 55131213 -142064219 - L1Md_T LINE L1 0 6582 6153 3 1005 847 247 35 65 chr1 55131213 55131426 -142064006 - B4A SINE B4 -75 217 3 3 1005 1330 266 125 70 chr1 55131465 55132032 -142063400 + Lx8 LINE L1 6749 7346 -127 3 1005 323 250 146 15 chr1 55132298 55132428 -142063004 - B1_Mm SINE Alu 0 147 1 3 1005 482 231 46 0 chr1 55132327 55132435 -142062997 - ID_B1 SINE B4 -38 186 74 3 1005 1376 131 34 0 chr1 55132587 55132793 -142062639 - Lx3C LINE L1 -126 6850 6638 3 1005 540 280 56 11 chr1 55132935 55133161 -142062271 - MTE2b LTR MaLR -122 257 23 3 1005 715 229 0 7 chr1 55133188 55133329 -142062103 - B1_Mus1 SINE Alu -1 147 8 3 1005 417 187 239 9 chr1 55133397 55133510 -142061922 - B1_Mus2 SINE Alu -8 139 1 3 1005 24 53 0 0 chr1 55133510 55133548 -142061884 + AT_rich Low_complexity Low_complexity 1 38 0 3 1005 1496 28 56 0 chr1 55133551 55133729 -142061703 + B2_Mm1a SINE B2 2 189 -4 3 1005 234 292 0 0 chr1 55133734 55133782 -142061650 + B1_Mus1 SINE Alu 2 49 -99 3 1005 268 277 189 42 chr1 55135604 55135747 -142059685 + B3 SINE B2 46 209 -7 3 1005 210 333 44 33 chr1 55136151 55136241 -142059191 + B1F SINE Alu 1 91 -58 3 1005 566 193 21 7 chr1 55136370 55136497 -142058935 + B1_Mus1 SINE Alu 1 126 -23 3 1005 287 75 0 0 chr1 55136497 55136537 -142058895 + B1_Mus2 SINE Alu 87 126 -21 3 1005 255 326 52 52 chr1 55136669 55136824 -142058608 + RSINE1 SINE B4 11 165 0 3 1005 531 242 136 61 chr1 55137281 55137479 -142057953 + B3 SINE B2 2 214 -2 3 1005 1199 35 0 0 chr1 55137652 55137793 -142057639 + B1_Mm SINE Alu 1 141 -6 3 1005 180 0 0 0 chr1 55137796 55137816 -142057616 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1005 256 108 0 0 chr1 55139030 55139067 -142056365 + B3A SINE B2 9 45 -153 3 1005 497 218 57 57 chr1 55139062 55139203 -142056229 - B2_Mm2 SINE B2 -4 191 51 3 1005 526 213 123 49 chr1 55139224 55139387 -142056045 + B3 SINE B2 39 213 -3 3 1005 276 257 226 9 chr1 55139582 55139688 -142055744 + B1_Mur1 SINE Alu 1 129 -20 3 1005 391 163 134 1 chr1 55140173 55140283 -142055149 + B3A SINE B2 1 120 -96 3 1005 317 175 13 74 chr1 55140459 55140554 -142054878 + B1_Mus2 SINE Alu 10 98 -49 3 1005 286 296 2 66 chr1 55140851 55140968 -142054464 + PB1D7 SINE Alu 7 118 -31 3 1005 497 167 0 72 chr1 55141027 55141124 -142054308 + B1_Mus2 SINE Alu 3 92 -55 3 1005 247 299 20 40 chr1 55141178 55141279 -142054153 + RSINE1 SINE B4 12 110 -55 3 1005 480 207 8 90 chr1 55141918 55142040 -142053392 - PB1D9 SINE Alu 0 120 9 3 1005 389 96 0 76 chr1 55142247 55142326 -142053106 + L1Md_F3 LINE L1 6498 6570 -14 3 1005 291 214 67 11 chr1 55142347 55142437 -142052995 - PB1D9 SINE Alu 0 120 26 3 1005 246 198 61 0 chr1 55142848 55142922 -142052510 + B1_Mus2 SINE Alu 42 147 0 3 1005 1167 58 28 23 chr1 55142959 55143136 -142052296 + B2_Mm1t SINE B2 11 188 -5 3 1005 33 43 0 0 chr1 55144725 55144772 -142050660 + GC_rich Low_complexity Low_complexity 1 47 0 3 1005 21 0 0 0 chr1 55144804 55144825 -142050607 + GC_rich Low_complexity Low_complexity 1 21 0 3 1005 332 278 27 36 chr1 55146521 55146633 -142048799 + PB1D7 SINE Alu 10 120 0 3 1005 25 31 0 0 chr1 55147661 55147693 -142047739 + AT_rich Low_complexity Low_complexity 1 32 0 3 1005 1099 58 7 0 chr1 55147708 55147845 -142047587 - B1_Mus1 SINE Alu -9 139 2 3 1005 255 237 66 0 chr1 55148312 55148388 -142047044 - MTD LTR MaLR 0 419 339 3 1005 754 242 99 48 chr1 55148399 55148651 -142046781 - MTD LTR MaLR -134 285 21 3 1005 587 205 71 0 chr1 55148843 55148970 -142046462 + B1_Mur4 SINE Alu 3 138 -12 3 1005 761 76 0 0 chr1 55149552 55149657 -142045775 + B2_Mm2 SINE B2 2 106 -89 3 1005 475 279 104 37 chr1 55150280 55150444 -142044988 - B4A SINE B4 -88 204 30 3 1005 392 205 33 33 chr1 55150497 55150588 -142044844 - B1F SINE Alu -58 91 1 3 1005 659 286 27 27 chr1 55150663 55150882 -142044550 - ID_B1 SINE B4 -2 222 4 3 1005 351 245 47 0 chr1 55150894 55151000 -142044432 - PB1D10 SINE Alu -6 111 1 3 1005 245 299 15 0 chr1 55151021 55151088 -142044344 - PB1 SINE Alu -59 68 1 3 1005 511 304 40 0 chr1 55151122 55151270 -142044162 - RSINE1 SINE B4 -10 155 2 3 1005 334 226 147 59 chr1 55151411 55151547 -142043885 - B1_Mur2 SINE Alu 0 149 2 3 1005 1374 95 16 0 chr1 55151623 55151813 -142043619 + B2_Mm1a SINE B2 1 193 0 3 1005 349 222 0 14 chr1 55151849 55151914 -142043518 + B3A SINE B2 2 65 -133 3 1005 907 204 52 34 chr1 55151914 55152362 -142043070 + RMER17C LTR ERVK 1 403 -7 3 1005 416 260 106 0 chr1 55152386 55152509 -142042923 + B3 SINE B2 72 207 -9 3 1005 189 26 79 0 chr1 55152518 55152556 -142042876 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1005 1212 54 0 0 chr1 55152556 55152703 -142042729 - B1_Mm SINE Alu 0 147 1 3 1005 351 270 50 0 chr1 55152718 55152818 -142042614 + PB1D10 SINE Alu 3 107 -10 3 1005 1392 53 25 50 chr1 55152907 55153106 -142042326 + B2_Mm2 SINE B2 1 194 -1 3 1005 712 259 98 0 chr1 55153124 55153317 -142042115 + B3 SINE B2 1 212 -4 4 1005 353 301 49 0 chr1 55153341 55153464 -142041968 + B1F SINE Alu 4 132 -17 4 1005 628 261 0 0 chr1 55153466 55153596 -142041836 - B1_Mur1 SINE Alu -14 135 6 4 1005 917 223 44 0 chr1 55153666 55153872 -142041560 - B3 SINE B2 0 216 2 4 1005 256 152 0 0 chr1 55153872 55153918 -142041514 - B3A SINE B2 -151 47 2 4 1005 257 269 21 70 chr1 55153942 55154048 -142041384 - B1F2 SINE Alu -25 95 1 4 1005 1289 24 40 14 chr1 55154128 55154631 -142040801 + (TG)n Simple_repeat Simple_repeat 1 516 0 4 1005 307 250 65 28 chr1 55154641 55154748 -142040684 - ID_B1 SINE B4 0 224 114 4 1005 452 268 9 35 chr1 55154924 55155040 -142040392 + PB1D10 SINE Alu 3 115 -2 4 1005 517 256 93 0 chr1 55155071 55155200 -142040232 + RSINE1 SINE B4 25 165 0 4 1005 933 123 92 12 chr1 55155223 55155387 -142040045 - MTC LTR MaLR -1 420 244 4 1005 1136 88 29 6 chr1 55155391 55155563 -142039869 - ORR1B1 LTR MaLR -8 386 211 4 1005 7346 159 61 29 chr1 55155573 55157273 -142038159 - Lx5 LINE L1 0 7050 5260 4 1005 1153 55 7 27 chr1 55157273 55157423 -142038009 - B1_Mm SINE Alu 0 147 1 4 1005 4637 158 18 18 chr1 55157423 55158110 -142037322 - Lx5 LINE L1 -618 5259 3926 4 1005 1793 169 102 143 chr1 55158110 55158754 -142036678 - RMER19B LTR ERVK -331 571 1 4 1005 387 232 12 0 chr1 55158804 55158886 -142036546 - B1_Mur1 SINE Alu -2 147 65 4 1005 263 314 137 0 chr1 55159046 55159148 -142036284 - MLT1F LTR MaLR -417 131 16 4 1005 2708 55 78 42 chr1 55159354 55159754 -142035678 - RLTR9F LTR ERVK -1 414 1 4 1005 3273 169 52 57 chr1 55159801 55160571 -142034861 + RMER13B LTR ERVK 1 766 -142 4 1005 385 124 157 0 chr1 55160600 55160689 -142034743 + RLTR47_MM LTR ERV1 430 532 0 4 1005 472 288 49 49 chr1 55161029 55161294 -142034138 + MuRRS4-int LTR ERV1 308 700 -6856 4 1005 496 268 53 33 chr1 55161506 55161735 -142033697 + MuRRS4-int LTR ERV1 2938 3117 -1946 4 1005 1290 25 0 0 chr1 55161935 55162094 -142033338 + B2_Mm1a SINE B2 2 160 -33 4 1005 279 0 0 0 chr1 55162094 55162125 -142033307 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1005 1966 244 29 43 chr1 55162307 55162619 -142032813 + MuRRS4-int LTR ERV1 3533 3834 -1229 4 1005 4901 36 8 5 chr1 55162619 55163204 -142032228 + LTRIS_Mus LTR ERV1 1 587 0 4 1005 1966 242 26 42 chr1 55163204 55163353 -142032079 + MuRRS4-int LTR ERV1 3835 3981 -1082 4 1005 1683 27 0 0 chr1 55163353 55163541 -142031891 - B2_Mm1t SINE B2 -5 188 1 4 1005 1966 279 75 71 chr1 55163541 55163966 -142031466 + MuRRS4-int LTR ERV1 3982 4025 -1038 4 1005 2647 92 162 0 chr1 55164595 55165053 -142030379 + RLTR47_MM LTR ERV1 1 532 0 4 1005 417 183 94 17 chr1 55165538 55165655 -142029777 + ORR1B2 LTR MaLR 1 126 -241 4 1005 890 159 23 47 chr1 55165652 55165909 -142029523 - RMER17C LTR ERVK -158 252 2 4 1005 413 231 0 96 chr1 55165998 55166053 -142029379 + B1F1 SINE Alu 33 87 -62 4 1005 1851 154 57 176 chr1 55166053 55166294 -142029138 - RLTR23 LTR ERV1 0 430 200 4 1005 185 0 40 0 chr1 55166294 55166319 -142029113 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 4 1005 1851 154 57 176 chr1 55166319 55166565 -142028867 - RLTR23 LTR ERV1 -231 199 1 4 1005 413 231 0 96 chr1 55166565 55166606 -142028826 + B1F1 SINE Alu 88 118 -31 4 1005 1718 217 165 32 chr1 55166606 55167134 -142028298 + RMER20B LTR ERVK 1 598 -29 4 1005 334 263 0 0 chr1 55167138 55167214 -142028218 + RMER20B LTR ERVK 527 602 -25 4 1005 362 120 0 74 chr1 55167548 55167629 -142027803 + PB1D10 SINE Alu 43 117 0 4 1005 1204 54 12 0 chr1 55167644 55167811 -142027621 - B2_Mm2 SINE B2 0 195 27 4 1005 4183 190 78 17 chr1 55167821 55167974 -142027458 - Lx6 LINE L1 -4 7456 7304 4 1005 2617 142 251 21 chr1 55167974 55168535 -142026897 - RMER6C LTR ERVK 0 690 1 4 1005 4183 190 78 17 chr1 55168535 55169217 -142026215 - Lx6 LINE L1 -157 7303 6570 4 1005 1657 177 13 64 chr1 55169217 55169400 -142026032 - RMER17B LTR ERVK 0 958 798 4 1005 189 0 0 0 chr1 55169400 55169421 -142026011 + (CGGGGG)n Simple_repeat Simple_repeat 3 23 0 4 1005 1657 177 13 64 chr1 55169421 55169629 -142025803 - RMER17B LTR ERVK -161 797 588 4 1005 315 140 1071 0 chr1 55169626 55169725 -142025707 - RMER17B LTR ERVK -910 48 2 4 1005 5053 177 16 24 chr1 55169728 55170968 -142024464 - Lx6 LINE L1 -887 6573 5343 4 1005 1144 63 7 0 chr1 55170970 55171112 -142024320 - B1_Mm SINE Alu 0 147 5 4 1005 689 170 0 0 chr1 55171117 55171229 -142024203 - Lx6 LINE L1 -1085 4795 4684 4 1005 1210 81 26 36 chr1 55171233 55171376 -142024056 + B2_Mm2 SINE B2 3 146 -49 4 1005 1838 135 12 56 chr1 55171376 55171713 -142023719 - RLTRETN_Mm LTR ERVK 0 322 1 4 1005 1210 81 26 36 chr1 55171713 55171762 -142023670 + B2_Mm2 SINE B2 147 193 -2 4 1005 269 70 93 0 chr1 55171768 55171811 -142023621 - Lx6 LINE L1 -1199 4681 4635 4 1005 1190 86 17 0 chr1 55171811 55171986 -142023446 + (TTCTC)n Simple_repeat Simple_repeat 3 180 0 4 1005 1677 26 0 10 chr1 55172328 55172522 -142022910 - B2_Mm1t SINE B2 0 193 2 4 1005 1656 36 0 5 chr1 55172526 55172720 -142022712 - B2_Mm1a SINE B2 0 193 1 4 1005 3154 131 30 17 chr1 55172720 55173262 -142022170 - Lx6 LINE L1 -1241 4639 4091 4 1005 805 132 49 0 chr1 55173262 55173410 -142022022 + ORR1B1 LTR MaLR 173 394 0 4 1005 1865 125 58 0 chr1 55173410 55173721 -142021711 + ORR1B1-int LTR MaLR 1 329 -1634 4 1005 2203 140 47 11 chr1 55173718 55174262 -142021170 + ORR1B1-int LTR MaLR 1002 1770 -193 4 1005 3587 146 60 27 chr1 55174262 55175001 -142020431 + RMER12 LTR ERVK 1 763 -559 4 1005 554 215 6 132 chr1 55174988 55175154 -142020278 + RMER12 LTR ERVK 958 1102 -220 4 1005 801 203 5 43 chr1 55175272 55175457 -142019975 + RMER12 LTR ERVK 1145 1322 0 4 1005 630 118 82 0 chr1 55175457 55175567 -142019865 + ORR1B1-int LTR MaLR 1845 1963 0 4 1005 1507 172 15 91 chr1 55175574 55175913 -142019519 + ORR1B1 LTR MaLR 41 353 -41 4 1005 1010 69 7 27 chr1 55175913 55176062 -142019370 + B1_Mm SINE Alu 2 147 0 4 1005 193 29 29 29 chr1 55176066 55176101 -142019331 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1005 334 146 0 0 chr1 55176120 55176175 -142019257 + ORR1B1 LTR MaLR 338 392 -2 4 1005 2220 146 15 38 chr1 55176177 55176653 -142018779 - Lx6 LINE L1 -3375 2505 2041 4 1005 1270 34 0 0 chr1 55176704 55176851 -142018581 + B1_Mus2 SINE Alu 1 147 0 4 1005 423 56 0 0 chr1 55176851 55176905 -142018527 + (A)n Simple_repeat Simple_repeat 1 54 0 4 1005 4367 160 31 36 chr1 55177740 55178957 -142016475 - Lx6 LINE L1 -3828 2052 859 4 1005 1091 277 105 10 chr1 55178951 55179407 -142016025 - Lx6 LINE L1 -7048 680 166 4 1005 1695 189 65 25 chr1 55179608 55180005 -142015427 + MTC LTR MaLR 1 413 -8 4 1005 789 243 35 0 chr1 55180032 55180205 -142015227 - B3A SINE B2 -18 180 2 4 1005 222 315 0 40 chr1 55180223 55180299 -142015133 + CT-rich Low_complexity Low_complexity 6 78 0 4 1005 279 211 66 0 chr1 55180599 55180675 -142014757 - PB1D10 SINE Alu -1 116 36 4 125 14651 69 14 10 chr1 55181024 55183763 -142011669 + L1VL2 LINE L1 239 2989 -626 4 1006 1234 48 7 0 chr1 55183784 55183931 -142011501 - B1_Mus1 SINE Alu 0 148 1 4 1006 23 0 0 0 chr1 55184092 55184115 -142011317 + AT_rich Low_complexity Low_complexity 1 23 0 4 1006 286 250 0 0 chr1 55184537 55184609 -142010823 + CT-rich Low_complexity Low_complexity 2 73 0 4 1006 408 143 0 0 chr1 55184780 55184850 -142010582 + (TCC)n Simple_repeat Simple_repeat 1 70 0 4 1006 26 30 0 0 chr1 55186035 55186068 -142009364 + AT_rich Low_complexity Low_complexity 1 33 0 4 1006 465 256 56 42 chr1 55186081 55186224 -142009208 + B3A SINE B2 38 182 -16 4 1006 1256 206 100 29 chr1 55186231 55186541 -142008891 - MTD LTR MaLR -16 403 72 4 1006 753 190 28 0 chr1 55186563 55186705 -142008727 - B1_Mur1 SINE Alu -2 147 2 4 1006 259 296 56 0 chr1 55186709 55186817 -142008615 + ORR1E LTR MaLR 34 147 -212 4 1006 384 189 0 62 chr1 55187020 55187117 -142008315 - B1F1 SINE Alu -10 139 49 4 1006 222 224 0 15 chr1 55187325 55187393 -142008039 + A-rich Low_complexity Low_complexity 2 68 0 4 1006 210 170 0 21 chr1 55188034 55188082 -142007350 + (CCCCG)n Simple_repeat Simple_repeat 3 49 0 4 1006 333 36 55 0 chr1 55189221 55189276 -142006156 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1006 502 145 0 0 chr1 55189277 55189360 -142006072 - B1_Mus2 SINE Alu -17 130 48 4 1006 330 288 82 26 chr1 55189406 55189577 -142005855 - ID_B1 SINE B4 -8 216 2 4 1006 243 211 135 87 chr1 55190166 55190270 -142005162 - ID_B1 SINE B4 -20 204 96 4 1006 338 211 26 0 chr1 55190379 55190455 -142004977 - B1_Mur4 SINE Alu -70 80 3 4 1006 287 256 51 0 chr1 55190717 55190795 -142004637 - B1F SINE Alu -1 148 67 4 1006 377 244 0 0 chr1 55190732 55190810 -142004622 - ID_B1 SINE B4 -17 207 130 4 1006 295 288 7 163 chr1 55190832 55190973 -142004459 - B1F1 SINE Alu -5 144 26 4 1006 417 276 42 7 chr1 55190988 55191130 -142004302 - B1F2 SINE Alu -2 147 1 4 1006 469 158 168 0 chr1 55191191 55191286 -142004146 - PB1D9 SINE Alu -1 119 9 4 1006 775 210 116 0 chr1 55191326 55191507 -142003925 - B3 SINE B2 -8 208 7 4 1006 1431 56 0 0 chr1 55191515 55191945 -142003487 + (TCC)n Simple_repeat Simple_repeat 1 430 0 4 1006 536 202 119 16 chr1 55191958 55192084 -142003348 - B1F1 SINE Alu -10 139 1 4 1006 350 222 0 36 chr1 55192301 55192385 -142003047 + PB1D10 SINE Alu 1 81 -36 4 1006 341 143 114 5 chr1 55192607 55192700 -142002732 + B1_Mm SINE Alu 1 141 -6 4 1006 216 152 0 0 chr1 55192732 55192765 -142002667 - ID4_ SINE ID -11 72 40 4 1006 1042 186 44 10 chr1 55192808 55193014 -142002418 - B3 SINE B2 -3 213 1 4 1006 225 0 0 0 chr1 55193169 55193194 -142002238 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1006 313 274 115 10 chr1 55194126 55194222 -142001210 + Lx8 LINE L1 7092 7197 -276 4 1006 259 208 40 40 chr1 55194315 55194390 -142001042 + ID4 SINE ID 1 75 -8 4 1006 386 185 0 0 chr1 55194563 55194628 -142000804 - ID4_ SINE ID -10 73 9 4 1006 277 306 50 34 chr1 55194653 55194832 -142000600 - L1MDa LINE L1 -3985 2648 2467 4 1006 846 200 29 24 chr1 55194842 55195047 -142000385 - B3 SINE B2 -6 210 5 4 1006 512 293 47 38 chr1 55195078 55195291 -142000141 - ID_B1 SINE B4 -8 216 2 4 1006 1228 48 0 0 chr1 55195370 55195517 -141999915 - B1_Mus2 SINE Alu 0 147 1 4 1006 429 36 0 0 chr1 55195553 55195608 -141999824 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1006 219 139 0 0 chr1 55195872 55195908 -141999524 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1006 322 333 79 33 chr1 55195945 55196097 -141999335 - RSINE1 SINE B4 -2 163 5 4 1006 228 310 56 14 chr1 55196143 55196215 -141999217 - B1F SINE Alu -74 75 1 4 1006 636 222 28 0 chr1 55196230 55196374 -141999058 - B1_Mur1 SINE Alu 0 149 2 4 1006 238 111 286 36 chr1 55196564 55196648 -141998784 - L1MEf LINE L1 -4678 1522 1418 4 1006 947 116 0 26 chr1 55196965 55197116 -141998316 - B1_Mur3 SINE Alu 0 149 3 4 1006 403 295 42 104 chr1 55197116 55197164 -141998268 - B4 SINE B4 -214 78 43 5 1006 820 228 276 45 chr1 55197542 55197987 -141997445 - RMER4B LTR ERVK -37 548 1 5 1006 366 224 11 23 chr1 55198230 55198317 -141997115 - PB1D9 SINE Alu -2 118 33 5 1006 1033 169 139 22 chr1 55198314 55198544 -141996888 - MTC LTR MaLR -75 346 90 5 1006 7491 131 20 10 chr1 55198544 55199514 -141995918 - L1_Mur2 LINE L1 -1491 4386 3419 5 1006 3257 38 10 2 chr1 55199514 55199907 -141995525 - MTA_Mm LTR MaLR 0 396 1 5 1006 7491 131 20 10 chr1 55199907 55200177 -141995255 - L1_Mur2 LINE L1 -2459 3418 3133 5 1006 818 283 138 30 chr1 55200177 55200604 -141994828 - Tigger1 DNA MER2_type -1941 477 5 5 1006 862 123 123 0 chr1 55200605 55200784 -141994648 + Lx9 LINE L1 7443 7643 -1 5 1006 1216 41 0 7 chr1 55200808 55200955 -141994477 + B1_Mm SINE Alu 2 147 0 5 1006 253 273 0 0 chr1 55201341 55201407 -141994025 + B4A SINE B4 85 150 -142 5 1006 413 173 4 11 chr1 55201351 55201444 -141993988 + B1_Mus1 SINE Alu 10 104 -16 5 1006 277 257 50 58 chr1 55202198 55202318 -141993114 - PB1D9 SINE Alu 0 120 2 5 1006 229 167 0 125 chr1 55202324 55202372 -141993060 - B1F1 SINE Alu -92 57 16 5 1006 210 150 75 0 chr1 55202421 55202461 -141992971 - MER91B DNA Tip100 -12 178 136 5 1006 1189 48 0 20 chr1 55202743 55202893 -141992539 + B1_Mus1 SINE Alu 2 148 0 5 1006 271 209 0 107 chr1 55203062 55203137 -141992295 + PB1D9 SINE Alu 53 119 -1 5 1006 301 214 167 11 chr1 55203485 55203575 -141991857 + ID_B1 SINE B4 80 183 -41 5 1006 466 335 0 0 chr1 55204021 55204182 -141991250 + (TG)n Simple_repeat Simple_repeat 2 162 0 5 1006 333 320 0 0 chr1 55204183 55204280 -141991152 - B4A SINE B4 -2 290 194 5 1006 333 0 0 0 chr1 55204436 55204473 -141990959 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1006 433 226 0 31 chr1 55204491 55204587 -141990845 - B1_Mur2 SINE Alu -9 140 48 5 1006 478 206 118 27 chr1 55204634 55204744 -141990688 - PB1D9 SINE Alu 0 120 1 5 1006 22 35 0 0 chr1 55205299 55205328 -141990104 + AT_rich Low_complexity Low_complexity 1 29 0 5 1006 27 0 0 0 chr1 55205361 55205388 -141990044 + AT_rich Low_complexity Low_complexity 1 27 0 5 1006 373 288 102 34 chr1 55205556 55205761 -141989671 - ORR1E LTR MaLR -130 229 11 5 1006 409 253 150 48 chr1 55205936 55206123 -141989309 - B4A SINE B4 -85 207 2 5 1006 877 202 81 6 chr1 55207935 55208143 -141987289 - MTD LTR MaLR -18 401 196 5 1006 215 0 67 0 chr1 55208147 55208177 -141987255 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1006 332 224 39 26 chr1 55208177 55208244 -141987188 - B1_Mur1 SINE Alu -10 139 70 5 1006 6425 68 34 23 chr1 55208285 55209162 -141986270 - Lx LINE L1 -1 6653 5767 5 1006 231 160 180 0 chr1 55209164 55209214 -141986218 - PB1D9 SINE Alu -41 79 21 5 1006 722 180 151 11 chr1 55209212 55209397 -141986035 - MTD LTR MaLR -209 212 2 5 1006 21 0 0 0 chr1 55210039 55210060 -141985372 + AT_rich Low_complexity Low_complexity 1 21 0 5 1006 1225 47 0 0 chr1 55210786 55210934 -141984498 + B1_Mus1 SINE Alu 1 148 0 5 1006 303 93 0 0 chr1 55210934 55210977 -141984455 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1006 259 253 58 0 chr1 55211890 55211977 -141983455 + PB1D9 SINE Alu 1 92 -28 5 1006 319 325 0 0 chr1 55212047 55212130 -141983302 + RSINE1 SINE B4 7 89 -76 5 1006 535 250 59 0 chr1 55212332 55212468 -141982964 + RSINE1 SINE B4 5 148 -17 5 1006 368 227 103 190 chr1 55212517 55212827 -141982605 + B4 SINE B4 2 284 -8 5 1006 500 267 43 22 chr1 55212972 55213110 -141982322 + B1F SINE Alu 2 142 -7 5 1006 499 263 90 11 chr1 55213152 55213329 -141982103 + B3 SINE B2 1 191 -25 5 1006 267 296 101 10 chr1 55213481 55213580 -141981852 - PB1D7 SINE Alu -11 109 2 5 1006 336 48 0 0 chr1 55213624 55213666 -141981766 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1006 651 207 21 14 chr1 55213666 55213799 -141981633 - B1_Mur3 SINE Alu -12 137 2 5 1006 234 0 0 0 chr1 55213814 55213840 -141981592 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 5 1006 752 109 84 0 chr1 55213859 55213978 -141981454 - B3 SINE B2 -87 129 1 5 1006 271 221 95 22 chr1 55214141 55214241 -141981191 + PB1D10 SINE Alu 1 112 -37 5 1006 282 262 125 51 chr1 55214249 55214436 -141980996 + B4 SINE B4 1 206 -86 5 1006 727 135 31 16 chr1 55214436 55214564 -141980868 + B1_Mur1 SINE Alu 3 132 -17 5 1006 273 169 117 17 chr1 55214567 55214627 -141980805 + B1_Mur2 SINE Alu 74 139 -10 5 1006 268 308 8 71 chr1 55214569 55214695 -141980737 + B4 SINE B4 165 282 -10 5 1006 216 216 39 0 chr1 55214778 55214829 -141980603 - RSINE1 SINE B4 -110 55 3 5 1006 357 287 113 95 chr1 55215263 55215494 -141979938 - L1MB1 LINE L1 -119 6070 5836 5 1006 539 254 130 0 chr1 55215523 55215692 -141979740 - B3 SINE B2 -15 201 11 5 1006 539 280 197 2 chr1 55215705 55216136 -141979296 - L1MB1 LINE L1 -513 5676 5152 5 1006 282 29 0 0 chr1 55216145 55216180 -141979252 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1006 900 199 61 25 chr1 55216196 55216392 -141979040 + B3 SINE B2 1 203 -13 5 1006 540 246 62 0 chr1 55216507 55216637 -141978795 - RSINE1 SINE B4 -24 141 4 5 1006 270 308 8 77 chr1 55216686 55216816 -141978616 + PB1 SINE Alu 5 125 -2 5 1006 251 114 23 0 chr1 55216907 55216951 -141978481 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1006 284 230 189 0 chr1 55217006 55217080 -141978352 - ID_B1 SINE B4 -5 219 132 5 1006 380 250 12 0 chr1 55217084 55217164 -141978268 - ID4_ SINE ID -2 81 1 5 1006 425 155 0 0 chr1 55217200 55217271 -141978161 - B1_Mur1 SINE Alu -5 144 74 5 1006 298 133 0 0 chr1 55218768 55218813 -141976619 - B1_Mus2 SINE Alu -101 46 2 5 1006 582 230 78 47 chr1 55218840 55219032 -141976400 + B3A SINE B2 1 198 0 5 1006 440 235 114 0 chr1 55219089 55219221 -141976211 - RSINE1 SINE B4 -18 147 1 5 1006 389 167 0 13 chr1 55219235 55219314 -141976118 + CT-rich Low_complexity Low_complexity 2 79 0 5 1006 1184 43 0 0 chr1 55219452 55219591 -141975841 - B1_Mus2 SINE Alu -8 139 1 5 1006 258 206 30 60 chr1 55219794 55219861 -141975571 + PB1D10 SINE Alu 51 115 -2 5 1006 697 186 57 7 chr1 55220059 55220200 -141975232 - B1_Mur2 SINE Alu -1 148 1 5 1006 453 19 0 0 chr1 55220203 55220257 -141975175 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1006 350 298 29 0 chr1 55220257 55220361 -141975071 - PB1D10 SINE Alu -10 107 1 5 1006 275 208 12 38 chr1 55220521 55220601 -141974831 - PB1D10 SINE Alu -5 112 35 5 1006 2084 104 9 3 chr1 55221313 55221630 -141973802 - ORR1A2 LTR MaLR -8 319 1 5 1006 549 137 63 0 chr1 55221630 55221725 -141973707 - B1_Mus2 SINE Alu -15 132 32 5 1006 1528 184 104 25 chr1 55221962 55222319 -141973113 - RLTR19 LTR ERVK -9 490 106 5 1006 761 215 0 14 chr1 55222405 55222551 -141972881 + B1_Mur1 SINE Alu 6 149 0 5 1006 266 298 31 21 chr1 55222592 55222688 -141972744 - ORSL-2b DNA Tip100 -213 295 199 5 1006 334 327 0 0 chr1 55222693 55222803 -141972629 - PB1D10 SINE Alu -7 110 1 5 1006 345 318 43 43 chr1 55222838 55222976 -141972456 - ID_B1 SINE B4 -6 218 81 5 1006 648 259 35 0 chr1 55222985 55223128 -141972304 - B1F SINE Alu -1 148 1 5 1006 373 226 0 0 chr1 55223149 55223211 -141972221 - B1_Mus1 SINE Alu -86 62 1 5 1006 609 319 0 6 chr1 55223391 55223555 -141971877 - RSINE1 SINE B4 0 165 3 5 1006 493 245 0 35 chr1 55223583 55223697 -141971735 + PB1D10 SINE Alu 6 115 -2 5 1006 458 231 45 18 chr1 55223735 55223845 -141971587 - PB1D9 SINE Alu -1 119 7 5 1006 476 305 76 30 chr1 55223956 55224088 -141971344 - ID_B1 SINE B4 -3 221 84 5 1006 710 242 168 0 chr1 55224095 55224285 -141971147 - ID_B1 SINE B4 -1 223 2 5 1006 514 217 30 30 chr1 55224348 55224481 -141970951 - B3A SINE B2 -65 133 1 5 1006 230 136 0 22 chr1 55224483 55224528 -141970904 + CT-rich Low_complexity Low_complexity 3 46 0 5 1006 273 270 108 0 chr1 55224853 55224927 -141970505 - PB1D7 SINE Alu -32 88 7 5 1006 189 0 0 0 chr1 55224927 55224948 -141970484 + (CCTA)n Simple_repeat Simple_repeat 4 24 0 5 1006 465 194 78 61 chr1 55225154 55225269 -141970163 + PB1D10 SINE Alu 1 117 0 5 1006 410 113 26 90 chr1 55225351 55225394 -141970038 + PB1D9 SINE Alu 40 84 -36 5 1006 4190 165 107 86 chr1 55225394 55226396 -141969036 + RLTR13D2 LTR ERVK 1 1023 0 5 1006 410 113 26 90 chr1 55226396 55226430 -141969002 + PB1D9 SINE Alu 85 112 -8 5 1006 240 86 0 0 chr1 55226430 55226465 -141968967 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 5 1006 332 113 0 27 chr1 55226475 55226548 -141968884 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 5 1006 581 26 39 0 chr1 55226550 55226627 -141968805 + (GAAAA)n Simple_repeat Simple_repeat 4 83 0 5 1006 1276 99 41 0 chr1 55226630 55226802 -141968630 + B2_Mm2 SINE B2 2 180 -15 5 1006 446 74 0 17 chr1 55226846 55226961 -141968471 + B2_Mm2 SINE B2 47 195 0 5 1006 545 189 66 0 chr1 55227455 55227561 -141967871 - PB1D9 SINE Alu -6 114 2 5 1006 381 269 37 37 chr1 55227853 55227961 -141967471 - RSINE1 SINE B4 -33 132 25 5 1006 21 0 0 0 chr1 55228098 55228119 -141967313 + AT_rich Low_complexity Low_complexity 1 21 0 5 1006 991 172 91 0 chr1 55229530 55229716 -141965716 + URR1B DNA MER1_type 1 203 -22 5 1006 1494 141 200 0 chr1 55229853 55230173 -141965259 + ORR1C2 LTR MaLR 1 384 0 5 1006 462 36 0 0 chr1 55231427 55231483 -141963949 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1006 247 98 19 38 chr1 55231571 55231624 -141963808 + CT-rich Low_complexity Low_complexity 3 54 0 6 1006 485 264 28 142 chr1 55231777 55232216 -141963216 - RLTR22_Mur LTR ERVK -233 1171 484 6 1006 345 243 96 10 chr1 55232228 55232332 -141963100 - RLTR22_Mur LTR ERVK -799 523 411 6 1006 1864 40 5 0 chr1 55232335 55232559 -141962873 - L1Md_T LINE L1 0 6582 6358 6 1006 1361 84 10 16 chr1 55232698 55232891 -141962541 - B2_Mm1a SINE B2 -1 192 1 6 1006 404 228 212 22 chr1 55232891 55233103 -141962329 - MTEb LTR MaLR -9 370 117 6 1006 2122 126 73 0 chr1 55233096 55233452 -141961980 - ORR1B1 LTR MaLR -8 386 5 6 1006 307 232 0 0 chr1 55233457 55233513 -141961919 - MTEb LTR MaLR -265 114 59 6 1006 360 250 0 0 chr1 55233513 55233581 -141961851 - MTEb LTR MaLR -281 98 31 6 1006 317 224 179 43 chr1 55233683 55233699 -141961733 + L1MA6 LINE L1 5542 5557 -734 6 1006 2084 120 74 38 chr1 55233699 55234064 -141961368 - ORR1C1 LTR MaLR 0 378 1 6 1006 317 224 179 43 chr1 55234064 55234187 -141961245 + L1MA6 LINE L1 5558 5700 -591 6 1006 652 222 281 13 chr1 55234245 55234359 -141961073 + L1MA6 LINE L1 5865 6004 -296 6 1006 216 0 0 0 chr1 55234359 55234383 -141961049 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 6 1006 652 222 281 13 chr1 55234383 55234578 -141960854 + L1MA6 LINE L1 6005 6256 -44 6 1006 639 187 110 48 chr1 55234597 55234743 -141960689 + B3 SINE B2 49 203 -13 6 1006 180 0 0 0 chr1 55234743 55234763 -141960669 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1006 297 109 0 0 chr1 55234869 55234915 -141960517 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 6 1006 1132 43 0 0 chr1 55234917 55235056 -141960376 - B1_Mm SINE Alu 0 147 9 6 1006 396 326 88 0 chr1 55235382 55235529 -141959903 - RSINE1 SINE B4 -2 163 4 6 1006 189 121 0 0 chr1 55236203 55236236 -141959196 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1006 653 139 32 77 chr1 55236251 55236407 -141959025 + RMER10B LTR ERVL 194 342 -56 6 1006 274 232 41 55 chr1 55236495 55236568 -141958864 - B3 SINE B2 -144 72 1 6 1006 310 223 144 31 chr1 55236786 55236883 -141958549 - PB1D10 SINE Alu 0 117 10 6 1006 963 201 38 33 chr1 55237133 55237344 -141958088 - B3 SINE B2 -4 212 1 6 1006 373 286 0 32 chr1 55237355 55237449 -141957983 - PB1 SINE Alu -8 119 29 6 1006 584 162 112 7 chr1 55237448 55237591 -141957841 + MTD-int LTR MaLR 902 1059 -199 6 1006 648 187 32 8 chr1 55237597 55237721 -141957711 + B1_Mur2 SINE Alu 1 127 -22 6 1006 248 0 31 0 chr1 55237729 55237761 -141957671 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1006 1101 181 60 0 chr1 55237766 55237965 -141957467 - B3 SINE B2 -5 211 1 6 1006 619 241 20 41 chr1 55237965 55238005 -141957427 + MTD-int LTR MaLR 1067 1100 -158 6 1006 750 159 25 82 chr1 55238005 55238163 -141957269 - B1_Mur2 SINE Alu 0 149 1 6 1006 619 241 20 41 chr1 55238163 55238317 -141957115 + MTD-int LTR MaLR 1101 1257 -1 6 1006 1407 257 65 13 chr1 55238318 55238716 -141956716 + MTD LTR MaLR 1 419 0 6 1006 333 0 0 0 chr1 55238768 55238805 -141956627 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1006 608 260 33 33 chr1 55238833 55238984 -141956448 - RSINE1 SINE B4 -14 151 1 6 1006 710 282 151 38 chr1 55239141 55239845 -141955587 - L1ME1 LINE L1 -429 5930 5134 6 1006 939 134 0 26 chr1 55239845 55239998 -141955434 - B1_Mur4 SINE Alu -1 149 1 6 1006 536 280 43 34 chr1 55239998 55240106 -141955326 - L1ME1 LINE L1 -1013 5133 5021 6 1006 684 189 0 57 chr1 55240644 55240784 -141954648 + B1_Mur3 SINE Alu 4 135 -14 6 1006 474 308 61 81 chr1 55241187 55241448 -141953984 - MER34A LTR ERV1 -307 264 9 6 1006 290 255 50 69 chr1 55241526 55241627 -141953805 - RSINE1 SINE B4 0 165 67 6 1006 1153 45 0 0 chr1 55242165 55242298 -141953134 + B1_Mus2 SINE Alu 2 134 -13 6 1006 324 0 0 0 chr1 55242298 55242334 -141953098 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1006 1054 203 18 28 chr1 55242363 55242581 -141952851 + B3 SINE B2 1 216 0 6 1006 909 240 45 5 chr1 55242638 55242839 -141952593 + B3 SINE B2 8 216 0 6 1006 551 225 31 56 chr1 55242862 55243022 -141952410 + B3A SINE B2 42 197 -1 6 1006 216 0 0 0 chr1 55243379 55243403 -141952029 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1006 292 291 58 0 chr1 55243458 55243544 -141951888 - L1M5 LINE L1 -457 5667 5577 6 1006 250 45 22 22 chr1 55243737 55243782 -141951650 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 6 1006 216 328 0 15 chr1 55244214 55244279 -141951153 + MIRb SINE MIR 17 80 -188 6 1006 682 163 61 78 chr1 55244386 55244566 -141950866 + B2_Mm2 SINE B2 1 177 -18 6 1006 671 216 9 0 chr1 55245253 55245369 -141950063 + B1_Mur2 SINE Alu 13 129 -20 6 1006 806 108 6 40 chr1 55245584 55246234 -141949198 + (CAGAGA)n Simple_repeat Simple_repeat 1 627 0 6 1006 1205 42 7 0 chr1 55246272 55246415 -141949017 + B1_Mus1 SINE Alu 5 148 0 6 1006 225 0 0 0 chr1 55246418 55246443 -141948989 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1006 23 0 0 0 chr1 55246503 55246526 -141948906 + AT_rich Low_complexity Low_complexity 1 23 0 6 1006 635 221 34 2 chr1 55246632 55246817 -141948615 + B3 SINE B2 1 196 -2 6 1006 181 0 33 33 chr1 55246825 55246855 -141948577 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1006 466 217 22 0 chr1 55247365 55247457 -141947975 - B3 SINE B2 -122 94 1 6 1006 227 294 24 0 chr1 55247488 55247573 -141947859 + Lx8 LINE L1 6671 6757 -716 6 1006 440 187 10 52 chr1 55247604 55247700 -141947732 - ID_B1 SINE B4 0 224 133 6 1006 659 264 115 0 chr1 55247701 55247875 -141947557 - B3 SINE B2 -22 194 1 6 1006 32 0 0 0 chr1 55248617 55248649 -141946783 + AT_rich Low_complexity Low_complexity 1 32 0 6 1006 797 222 136 0 chr1 55249770 55249946 -141945486 - B3 SINE B2 -7 209 10 6 1006 426 263 43 50 chr1 55250573 55250590 -141944842 + ID_B1 SINE B4 77 206 -86 6 1006 725 161 0 0 chr1 55250590 55250702 -141944730 + B1_Mur4 SINE Alu 9 120 -30 6 1006 423 0 0 0 chr1 55250702 55250749 -141944683 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1006 426 271 52 71 chr1 55250749 55250797 -141944635 + ID_B1 SINE B4 198 249 -43 6 1006 252 0 0 0 chr1 55251943 55251971 -141943461 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 6 1006 511 328 5 65 chr1 55252587 55252773 -141942659 + ID_B1 SINE B4 42 216 -8 6 1006 803 224 24 86 chr1 55252782 55252992 -141942440 + B3A SINE B2 2 198 0 6 1006 529 259 117 75 chr1 55253327 55253568 -141941864 + B4A SINE B4 9 292 0 6 1006 307 0 23 23 chr1 55253897 55253941 -141941491 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 6 1006 996 144 0 0 chr1 55254349 55254495 -141940937 - B1_Mus2 SINE Alu 0 147 2 6 1006 225 0 0 0 chr1 55254506 55254531 -141940901 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1006 1253 113 11 0 chr1 55254600 55254777 -141940655 + B2_Mm1t SINE B2 1 179 -14 6 1006 341 88 313 26 chr1 55254824 55254939 -141940493 + B2_Mm2 SINE B2 47 194 -1 6 1006 239 172 237 103 chr1 55255238 55255335 -141940097 - PB1D9 SINE Alu 0 120 11 6 1006 315 258 140 0 chr1 55255265 55255358 -141940074 - MT2B LTR ERVL -344 257 152 6 1006 240 143 0 0 chr1 55255375 55255417 -141940015 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 6 1006 285 302 114 45 chr1 55255419 55255551 -141939881 - RSINE1 SINE B4 -22 143 3 6 1006 230 214 0 35 chr1 55255641 55255699 -141939733 + L1M5 LINE L1 5852 5907 -255 6 1006 222 292 167 11 chr1 55255705 55255795 -141939637 + PB1D7 SINE Alu 2 105 -44 6 1006 257 0 30 0 chr1 55256025 55256058 -141939374 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 6 1006 226 148 0 36 chr1 55256146 55256202 -141939230 + C-rich Low_complexity Low_complexity 3 56 0 6 1006 754 197 7 45 chr1 55256318 55256472 -141938960 - B1_Mur4 SINE Alu 0 150 3 6 1006 257 309 53 11 chr1 55256551 55256646 -141938786 + L2 LINE L2 2751 2849 -570 6 1006 555 258 16 39 chr1 55256709 55256838 -141938594 + RSINE1 SINE B4 35 160 -5 6 1006 441 169 91 103 chr1 55256910 55257075 -141938357 + RLTR15 LTR ERVK 1 163 -196 6 1006 285 247 68 68 chr1 55257213 55257374 -141938058 + RLTR15 LTR ERVK 181 341 -18 6 1006 205 156 0 0 chr1 55257774 55257806 -141937626 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1006 479 264 51 129 chr1 55257808 55257986 -141937446 - RSINE1 SINE B4 0 165 2 6 1006 219 217 0 21 chr1 55259337 55259384 -141936048 - L2b LINE L2 -16 3359 3314 6 1006 468 0 0 0 chr1 55260027 55260079 -141935353 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 6 1006 780 179 14 0 chr1 55260079 55260219 -141935213 - B1_Mur3 SINE Alu -7 142 1 6 1006 369 0 0 0 chr1 55260240 55260281 -141935151 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 6 1006 1211 70 87 6 chr1 55260281 55260443 -141934989 - B2_Mm2 SINE B2 -18 177 1 6 1006 636 140 10 0 chr1 55260551 55260651 -141934781 + B1_Mur4 SINE Alu 41 141 -9 6 1006 219 69 0 0 chr1 55260651 55260680 -141934752 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 6 1006 384 329 174 28 chr1 55261404 55261651 -141933781 - B4 SINE B4 0 292 10 6 1006 548 212 9 0 chr1 55261908 55262021 -141933411 + BC1_Mm scRNA scRNA 2 115 -37 6 1006 182 217 128 117 chr1 55262244 55262338 -141933094 - MIR SINE MIR -87 175 81 6 1006 1492 54 5 0 chr1 55263659 55263843 -141931589 + B2_Mm1a SINE B2 2 186 -7 6 1006 603 146 202 8 chr1 55264499 55264623 -141930809 - B1_Mur3 SINE Alu -1 148 1 6 1006 594 72 31 0 chr1 55265141 55265238 -141930194 + (TCCA)n Simple_repeat Simple_repeat 3 102 0 6 1006 333 344 51 19 chr1 55265260 55265417 -141930015 - RSINE1 SINE B4 0 165 4 6 1006 221 257 107 13 chr1 55265497 55265572 -141929860 + ID4_ SINE ID 1 82 -1 6 1006 218 329 0 12 chr1 55265781 55265867 -141929565 - MER5A DNA MER1_type -65 124 40 6 1006 254 312 30 40 chr1 55266157 55266257 -141929175 - PB1D7 SINE Alu -21 99 1 6 1006 390 188 14 0 chr1 55266351 55266420 -141929012 + B1_Mur4 SINE Alu 25 94 -56 6 1006 810 128 38 0 chr1 55266468 55266601 -141928831 + URR1B DNA MER1_type 86 223 -2 7 1006 233 189 57 0 chr1 55266601 55266643 -141928789 + B1_Mur2 SINE Alu 105 149 0 7 1006 201 147 0 0 chr1 55266669 55266703 -141928729 + (CAA)n Simple_repeat Simple_repeat 3 36 0 7 1006 27 29 0 0 chr1 55266888 55266922 -141928510 + AT_rich Low_complexity Low_complexity 1 34 0 7 1006 1051 275 21 58 chr1 55267171 55267549 -141927883 + MT2A LTR ERVL 6 369 -164 7 1006 427 200 7 133 chr1 55267763 55267913 -141927519 - B1F1 SINE Alu -18 131 1 7 1006 470 239 53 0 chr1 55267801 55267914 -141927518 - ID_B1 SINE B4 -25 199 81 7 1006 274 186 23 0 chr1 55268625 55268711 -141926721 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1006 424 229 0 24 chr1 55268747 55268832 -141926600 + ID4_ SINE ID 1 83 0 7 1006 779 172 7 7 chr1 55268885 55269020 -141926412 - B1_Mur4 SINE Alu -15 135 1 7 1006 601 296 81 14 chr1 55269025 55269234 -141926198 - ID_B1 SINE B4 0 224 2 7 1006 354 91 0 0 chr1 55269408 55269463 -141925969 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1006 241 163 169 31 chr1 55269465 55269574 -141925858 - B4 SINE B4 -42 123 3 7 1006 815 178 331 34 chr1 55269690 55269986 -141925446 + ORR1C2 LTR MaLR 1 384 0 7 1006 1445 78 16 0 chr1 55270227 55270419 -141925013 - B2_Mm2 SINE B2 0 195 1 7 1006 324 0 0 0 chr1 55270674 55270710 -141924722 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1006 1334 82 44 0 chr1 55270720 55270902 -141924530 + B2_Mm2 SINE B2 2 191 -4 7 1006 229 300 0 0 chr1 55271297 55271347 -141924085 - 5S rRNA rRNA -71 50 1 7 1006 777 103 0 0 chr1 55271605 55271712 -141923720 - B1_Mur3 SINE Alu -21 128 22 7 1006 1203 62 0 0 chr1 55271856 55272000 -141923432 + B1_Mus1 SINE Alu 2 145 -3 7 1006 243 79 0 0 chr1 55272000 55272038 -141923394 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 7 1006 342 0 0 0 chr1 55272702 55272740 -141922692 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 7 1006 2370 75 62 0 chr1 55273217 55273525 -141921907 + ORR1A2 LTR MaLR 1 327 0 7 1006 517 289 16 0 chr1 55273533 55273661 -141921771 + MTD LTR MaLR 290 419 0 7 1006 366 266 0 0 chr1 55273752 55273880 -141921552 + (TG)n Simple_repeat Simple_repeat 2 129 0 7 1006 466 284 8 16 chr1 55274575 55274704 -141920728 + B1F SINE Alu 5 132 -17 7 1006 285 29 0 0 chr1 55274706 55274740 -141920692 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1006 968 168 135 20 chr1 55275289 55275341 -141920091 - URR1A DNA MER1_type -3 223 175 7 1006 189 0 0 0 chr1 55275341 55275362 -141920070 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7 1006 968 168 135 20 chr1 55275362 55275509 -141919923 - URR1A DNA MER1_type -52 174 1 7 1006 379 227 43 43 chr1 55275713 55275805 -141919627 - PB1D10 SINE Alu -8 109 18 7 1006 313 276 13 0 chr1 55276518 55276594 -141918838 + MER58B DNA MER1_type 248 324 -17 7 1006 5744 110 72 15 chr1 55276603 55277510 -141917922 + RMER17B LTR ERVK 1 958 0 7 1006 226 283 115 7 chr1 55277734 55277873 -141917559 - L1M5 LINE L1 -689 5435 5282 7 1006 720 273 18 48 chr1 55278178 55278405 -141917027 - ID_B1 SINE B4 -3 221 2 7 1006 540 246 45 0 chr1 55278785 55278895 -141916537 - PB1D10 SINE Alu 0 117 3 7 1006 193 336 17 78 chr1 55279321 55279437 -141915995 - MIRb SINE MIR -68 200 92 7 1006 1331 104 156 0 chr1 55279438 55279630 -141915802 + URR1A DNA MER1_type 5 226 0 7 1006 226 194 0 0 chr1 55279893 55279929 -141915503 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 7 1006 583 262 141 38 chr1 55279934 55280196 -141915236 - B4A SINE B4 0 292 4 7 1006 2693 83 0 0 chr1 55280325 55280652 -141914780 + ORR1A2 LTR MaLR 1 327 0 7 1006 199 210 61 61 chr1 55281491 55281557 -141913875 + L3 LINE CR1 731 796 -3693 7 1006 781 168 6 6 chr1 55283636 55283816 -141911616 + GA-rich Low_complexity Low_complexity 1 180 0 7 1006 558 133 0 0 chr1 55283888 55283978 -141911454 + (GA)n Simple_repeat Simple_repeat 1 90 0 7 1006 216 0 0 0 chr1 55284027 55284051 -141911381 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1006 367 277 118 12 chr1 55284328 55284489 -141910943 - B3 SINE B2 -37 179 2 7 1006 210 315 53 21 chr1 55284745 55284839 -141910593 + MIR SINE MIR 33 129 -133 7 1006 207 0 0 0 chr1 55285668 55285691 -141909741 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 7 1006 603 92 0 0 chr1 55285688 55285775 -141909657 + (A)n Simple_repeat Simple_repeat 1 87 0 7 1006 414 0 0 0 chr1 55286080 55286126 -141909306 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1006 779 178 89 0 chr1 55286189 55286324 -141909108 - B1_Mur4 SINE Alu -2 148 2 7 1006 584 295 14 72 chr1 55286328 55286551 -141908881 - B4 SINE B4 -67 225 16 7 1006 338 169 192 101 chr1 55286543 55286642 -141908790 - B1_Mur1 SINE Alu -33 116 9 7 1006 8583 27 1 0 chr1 55286874 55287949 -141907483 - L1Md_T LINE L1 0 6582 5506 7 1006 453 297 74 52 chr1 55287991 55288222 -141907210 + MER2 DNA MER2_type 99 334 -11 7 1006 807 274 55 52 chr1 55288421 55288729 -141906703 + Lx9 LINE L1 6786 7094 -550 7 1006 557 162 104 9 chr1 55288820 55288840 -141906592 - B1_Mm SINE Alu 0 147 128 7 1006 257 0 30 0 chr1 55288840 55288873 -141906559 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1006 557 162 104 9 chr1 55288873 55288958 -141906474 - B1_Mm SINE Alu -20 127 32 7 1006 695 248 23 81 chr1 55288977 55289079 -141906353 + L1_Mur3 LINE L1 4122 4214 -1666 7 1006 735 162 25 8 chr1 55289079 55289197 -141906235 + PB1D9 SINE Alu 1 120 0 7 1006 695 248 23 81 chr1 55289197 55289353 -141906079 + L1_Mur3 LINE L1 4215 4365 -1515 7 1006 189 0 0 0 chr1 55289354 55289375 -141906057 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1006 687 65 26 0 chr1 55289375 55289477 -141905955 - B1_Mus2 SINE Alu 0 147 42 7 1006 258 213 0 16 chr1 55289501 55289563 -141905869 + L1_Mur3 LINE L1 4398 4458 -1422 7 1006 564 314 24 30 chr1 55289664 55289958 -141905474 + L1M5 LINE L1 5439 5738 -502 7 1006 1692 199 91 8 chr1 55290074 55290459 -141904973 + MTD LTR MaLR 3 419 0 7 1006 323 60 0 20 chr1 55290760 55290811 -141904621 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1006 4045 218 59 11 chr1 55290811 55291716 -141903716 - Lx7 LINE L1 -281 7415 6468 7 1006 1803 85 10 167 chr1 55292104 55292487 -141902945 + RLTR9F LTR ERVK 1 323 -92 7 1006 1140 0 0 62 chr1 55292492 55292684 -141902748 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1006 1018 85 0 7 chr1 55292712 55292854 -141902578 + B1_Mus1 SINE Alu 8 148 0 7 1006 193 103 14 56 chr1 55292874 55292946 -141902486 + A-rich Low_complexity Low_complexity 2 70 0 7 1006 443 265 110 6 chr1 55293026 55293189 -141902243 - MER5A DNA MER1_type -8 181 2 7 1006 297 302 125 0 chr1 55296768 55296864 -141898568 - PB1D10 SINE Alu -9 108 1 7 1006 315 0 0 0 chr1 55297871 55297906 -141897526 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1006 211 290 43 0 chr1 55298088 55298157 -141897275 + B3A SINE B2 3 74 -124 7 1006 325 197 45 15 chr1 55298100 55298167 -141897265 + ID4 SINE ID 15 83 0 7 1006 309 341 108 112 chr1 55299259 55299546 -141895886 - B4 SINE B4 -6 286 1 7 1006 22 0 0 0 chr1 55300412 55300434 -141894998 + AT_rich Low_complexity Low_complexity 1 22 0 7 1006 678 208 17 0 chr1 55300458 55300578 -141894854 - B1_Mur2 SINE Alu -19 130 9 7 1006 486 166 22 0 chr1 55300581 55300670 -141894762 + ORR1D1 LTR MaLR 285 379 0 7 1006 1612 188 60 88 chr1 55300687 55300969 -141894463 + RCHARR1 DNA MER1_type 481 745 -229 7 1006 330 314 18 61 chr1 55300969 55301132 -141894300 - RSINE1 SINE B4 -7 158 3 7 1006 1612 188 60 88 chr1 55301132 55301351 -141894081 + RCHARR1 DNA MER1_type 746 968 -6 7 1006 377 217 14 14 chr1 55302281 55302351 -141893081 - ID4_ SINE ID -11 72 3 7 1006 23 0 0 0 chr1 55302982 55303005 -141892427 + AT_rich Low_complexity Low_complexity 1 23 0 7 1006 25 0 0 0 chr1 55304320 55304345 -141891087 + AT_rich Low_complexity Low_complexity 1 25 0 7 1006 198 71 0 0 chr1 55305526 55305554 -141889878 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1006 287 167 28 83 chr1 55305927 55305999 -141889433 - ID4 SINE ID -14 69 2 7 1006 21 0 0 0 chr1 55307087 55307108 -141888324 + AT_rich Low_complexity Low_complexity 1 21 0 7 1006 883 263 20 25 chr1 55307170 55307369 -141888063 + B3A SINE B2 1 198 0 7 1006 240 228 49 25 chr1 55308204 55308285 -141887147 + MIRc SINE MIR 173 255 -13 7 1006 1257 59 129 0 chr1 55308392 55308562 -141886870 + B2_Mm1t SINE B2 2 193 0 7 1006 227 302 56 44 chr1 55308695 55308785 -141886647 - B4A SINE B4 -2 290 200 7 1006 569 290 51 0 chr1 55308877 55309015 -141886417 + RSINE1 SINE B4 4 148 -17 7 1006 2106 261 133 15 chr1 55309070 55309783 -141885649 + Lx8 LINE L1 6677 7473 0 7 1006 665 165 165 0 chr1 55309891 55310012 -141885420 + B1_Mur4 SINE Alu 5 145 -5 7 1006 1285 159 35 10 chr1 55310046 55310249 -141885183 + B3 SINE B2 2 209 -7 7 1006 4716 183 63 83 chr1 55310421 55310762 -141884670 + Lx7 LINE L1 5431 5785 -1911 7 1006 938 137 28 14 chr1 55310762 55310903 -141884529 + B1_Mus1 SINE Alu 1 143 -5 7 1006 4716 204 45 48 chr1 55310903 55311797 -141883635 + Lx7 LINE L1 5786 6683 -1013 7 1006 226 198 63 135 chr1 55311805 55311916 -141883516 + Lx7 LINE L1 7286 7388 -308 7 1006 1759 214 111 24 chr1 55311918 55312378 -141883054 + RLTR11A LTR ERVK 1 500 -28 7 1007 1070 161 65 72 chr1 55312399 55312720 -141882712 + Lx7 LINE L1 7377 7695 -1 7 1007 856 263 140 14 chr1 55313062 55313355 -141882077 - MER2 DNA MER2_type -1 344 15 7 1007 892 260 88 0 chr1 55313491 55313695 -141881737 + ID_B1 SINE B4 2 223 -1 7 1007 1076 230 34 0 chr1 55313863 55314072 -141881360 + B3 SINE B2 1 216 0 7 1007 2069 147 42 3 chr1 55314096 55314430 -141881002 - ORR1B2 LTR MaLR -8 359 13 8 1007 6049 96 71 12 chr1 55314453 55314603 -141880829 - Lx2 LINE L1 -6 6991 6832 8 1007 3453 43 8 0 chr1 55314603 55314996 -141880436 - MTA_Mm LTR MaLR 0 396 1 8 1007 6049 96 71 12 chr1 55314996 55315701 -141879731 - Lx2 LINE L1 -166 6831 6085 8 1007 1329 73 6 6 chr1 55315701 55315881 -141879551 + MT2C_Mm LTR ERVL 296 475 0 8 1007 7116 159 114 30 chr1 55315908 55317299 -141878133 - ORR1B2-int LTR MaLR -1 1508 1 8 1007 1763 133 214 26 chr1 55317299 55317608 -141877824 - ORR1B2 LTR MaLR 0 367 1 8 1007 778 229 73 21 chr1 55317612 55317804 -141877628 - B3 SINE B2 -13 203 2 8 1007 5783 65 4 1 chr1 55318185 55318882 -141876550 + L1_Mus2 LINE L1 5868 6566 0 8 1007 1326 41 0 0 chr1 55319107 55319253 -141876179 - B1_Mus2 SINE Alu 0 147 2 8 1007 610 291 8 0 chr1 55319623 55319757 -141875675 + ID_B1 SINE B4 80 214 -10 8 1007 3387 208 106 90 chr1 55320161 55321087 -141874345 + Lx5 LINE L1 5992 6932 -118 8 1007 2051 169 124 17 chr1 55321089 55321564 -141873868 + RMER4B LTR ERVK 1 459 -7 8 1007 307 238 0 116 chr1 55321572 55321710 -141873722 + Lx5 LINE L1 6929 7050 0 8 1007 871 257 164 19 chr1 55321791 55321964 -141873468 - MTEa LTR MaLR -7 372 159 8 1007 731 40 10 0 chr1 55321964 55322063 -141873369 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 8 1007 871 257 164 19 chr1 55322063 55322199 -141873233 - MTEa LTR MaLR -221 158 19 8 1007 615 232 93 7 chr1 55322184 55322404 -141873028 - MTEa-int LTR MaLR -11 1569 1179 8 1007 1275 286 15 62 chr1 55322407 55322688 -141872744 + Lx9 LINE L1 6900 7170 -474 8 1007 2707 161 98 4 chr1 55322688 55323170 -141872262 + RLTR11A2 LTR ERVK 1 527 0 8 1007 1275 286 15 62 chr1 55323170 55323294 -141872138 + Lx9 LINE L1 7171 7286 -358 8 1007 511 218 50 0 chr1 55323303 55323404 -141872028 - MTE2b LTR MaLR -273 106 1 8 1007 3138 44 8 0 chr1 55323497 55323862 -141871570 + L1Md_F2 LINE L1 6215 6582 0 8 1007 387 105 0 0 chr1 55324540 55324597 -141870835 + (CAT)n Simple_repeat Simple_repeat 1 57 0 8 1007 825 194 37 0 chr1 55324610 55324744 -141870688 - B1_Mur1 SINE Alu -7 142 4 8 1007 780 255 139 31 chr1 55324849 55325108 -141870324 - B4 SINE B4 -1 291 5 8 1007 209 119 24 0 chr1 55325811 55325853 -141869579 + (TA)n Simple_repeat Simple_repeat 1 43 0 8 1007 228 346 26 0 chr1 55328007 55328085 -141867347 + MLT1F1 LTR MaLR 366 445 -124 8 1007 677 257 0 7 chr1 55328272 55328425 -141867007 + MER3 DNA MER1_type 1 152 -57 8 1007 27 0 0 0 chr1 55328835 55328862 -141866570 + AT_rich Low_complexity Low_complexity 1 27 0 8 1007 308 300 69 10 chr1 55328871 55328972 -141866460 - PB1D10 SINE Alu -10 107 1 8 1007 265 313 0 15 chr1 55328977 55329045 -141866387 + ID4_ SINE ID 15 81 -2 8 1007 23 0 0 0 chr1 55329065 55329088 -141866344 + AT_rich Low_complexity Low_complexity 1 23 0 8 1007 8805 28 18 0 chr1 55329842 55330871 -141864561 + L1Md_F2 LINE L1 4540 5586 -297 8 1007 8617 43 3 2 chr1 55330871 55331866 -141863566 + L1Md_F2 LINE L1 5587 6582 0 8 1007 412 262 151 44 chr1 55333082 55333377 -141862055 - L1MA4 LINE L1 -370 5930 5616 8 1007 29 47 0 0 chr1 55333563 55333606 -141861826 + AT_rich Low_complexity Low_complexity 1 43 0 8 1007 740 178 264 0 chr1 55333916 55334079 -141861353 + B3 SINE B2 1 206 -10 8 1007 1176 51 0 0 chr1 55334101 55334239 -141861193 + B1_Mus2 SINE Alu 1 138 -9 8 1007 378 0 0 0 chr1 55334239 55334281 -141861151 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 1007 811 220 202 11 chr1 55334490 55334752 -141860680 - Lx8 LINE L1 -341 7132 6821 8 1007 301 226 71 28 chr1 55335587 55335728 -141859704 + L1_Mur1 LINE L1 1650 1796 -4090 8 1007 2045 119 82 33 chr1 55336009 55336399 -141859033 + RLTR9E LTR ERVK 1 409 0 8 1007 232 209 45 34 chr1 55336437 55336526 -141858906 + L1M4c LINE L1 2330 2419 -3965 8 1007 979 249 13 75 chr1 55336534 55336842 -141858590 + B4A SINE B4 2 290 -2 8 1007 361 275 0 12 chr1 55337805 55337886 -141857546 - ID SINE ID -142 82 3 8 1007 683 291 22 0 chr1 55337901 55338080 -141857352 - B3 SINE B2 -7 209 27 8 1007 25 51 0 0 chr1 55338098 55338137 -141857295 + AT_rich Low_complexity Low_complexity 1 39 0 8 1007 1884 124 19 136 chr1 55338285 55338659 -141856773 + RMER19B LTR ERVK 1 330 -572 8 1007 692 143 0 0 chr1 55338661 55338766 -141856666 + RMER19B LTR ERVK 798 902 0 8 1007 230 266 28 138 chr1 55338849 55338958 -141856474 + MTE2b LTR MaLR 11 107 -272 8 1007 1696 228 103 0 chr1 55338958 55339326 -141856106 + MTD LTR MaLR 1 406 -13 8 1007 801 280 42 37 chr1 55339329 55339544 -141855888 + MTE2b LTR MaLR 105 320 -59 8 1007 2456 131 35 37 chr1 55339561 55339966 -141855466 + Lx4A LINE L1 6652 7055 -3 8 1007 26 0 0 0 chr1 55339967 55339993 -141855439 + AT_rich Low_complexity Low_complexity 1 26 0 8 1007 3928 284 111 28 chr1 55340039 55341336 -141854096 + MTE-int LTR MaLR 155 1559 -21 8 1007 1239 203 143 117 chr1 55341343 55341728 -141853704 - MTD LTR MaLR -13 406 12 8 1007 193 29 29 29 chr1 55341729 55341764 -141853668 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1007 1558 235 35 43 chr1 55341810 55342184 -141853248 + MTEa LTR MaLR 8 378 -1 8 1007 401 337 134 28 chr1 55342200 55342447 -141852985 + Tigger7 DNA MER2_type 7 279 -2212 8 1007 248 312 13 0 chr1 55342443 55342520 -141852912 + Tigger7 DNA MER2_type 2404 2481 -10 8 1007 588 29 0 0 chr1 55343438 55343508 -141851924 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 8 1007 1073 82 0 52 chr1 55343509 55343663 -141851769 - B1_Mus1 SINE Alu -1 147 2 8 1007 348 294 43 18 chr1 55343753 55343803 -141851629 + L1MA6 LINE L1 5946 5997 -303 8 1007 1477 203 46 43 chr1 55343803 55344173 -141851259 + ORR1D1 LTR MaLR 4 374 0 8 1007 348 294 43 18 chr1 55344173 55344285 -141851147 + L1MA6 LINE L1 5998 6112 -188 8 1007 233 316 35 0 chr1 55344285 55344342 -141851090 + PB1D10 SINE Alu 51 109 -8 8 1007 334 263 61 9 chr1 55344369 55344484 -141850948 + L1MA6 LINE L1 5818 5938 -362 8 1007 1049 103 228 0 chr1 55344579 55344763 -141850669 + URR1A DNA MER1_type 1 226 0 8 1007 331 267 110 17 chr1 55344784 55344902 -141850530 + MLT1A LTR MaLR 246 374 0 8 1007 340 245 55 78 chr1 55345169 55345386 -141850046 - L1MA6 LINE L1 -1 6299 6088 8 1007 7629 52 10 0 chr1 55345412 55346644 -141848788 - L1_Mus1 LINE L1 -7 6560 5321 8 1007 579 277 41 32 chr1 55346672 55346918 -141848514 - L1MA6 LINE L1 -236 6064 5817 8 1007 309 349 0 9 chr1 55346949 55347059 -141848373 - PB1D10 SINE Alu -5 112 4 8 1007 222 310 28 14 chr1 55347289 55347361 -141848071 + ID2 SINE ID 1 73 -10 8 1007 342 0 0 0 chr1 55347365 55347403 -141848029 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 1007 284 333 0 0 chr1 55347507 55347573 -141847859 - ID_B1 SINE B4 -75 149 84 8 1007 231 301 45 72 chr1 55347583 55347694 -141847738 - Charlie4a DNA MER1_type -5 503 396 8 1007 258 239 29 29 chr1 55347922 55347991 -141847441 + MTEa LTR MaLR 281 349 -30 8 1007 392 315 28 9 chr1 55348146 55348255 -141847177 + ORR1E LTR MaLR 25 135 -224 8 1007 3726 62 19 0 chr1 55348486 55348952 -141846480 + MT2C_Mm LTR ERVL 1 475 0 8 1007 1038 198 56 0 chr1 55349031 55349228 -141846204 + B3 SINE B2 3 210 -6 8 1007 1301 96 16 11 chr1 55349398 55349587 -141845845 - B2_Mm2 SINE B2 -4 191 2 8 1007 572 312 139 10 chr1 55349811 55350012 -141845420 + Tigger5 DNA MER2_type 16 242 -2164 8 1007 950 248 49 25 chr1 55350091 55350294 -141845138 - B3 SINE B2 0 216 9 8 1007 1327 78 34 0 chr1 55350592 55350771 -141844661 + B2_Mm2 SINE B2 3 187 -8 8 1007 369 288 0 15 chr1 55351128 55351233 -141844199 - B3A SINE B2 -114 102 2 8 1007 249 218 80 18 chr1 55351233 55351345 -141844087 - L1MA6 LINE L1 -120 6180 6062 8 1007 867 231 156 104 chr1 55351393 55351740 -141843692 + MTE2a LTR MaLR 1 365 -14 8 1007 674 274 54 129 chr1 55351768 55352086 -141843346 + MTE2a LTR MaLR 1 303 -76 8 1007 1297 88 16 11 chr1 55352086 55352270 -141843162 - B2_Mm2 SINE B2 -10 185 1 8 1007 674 274 54 129 chr1 55352270 55352361 -141843071 + MTE2a LTR MaLR 304 379 0 8 1007 311 271 14 0 chr1 55352866 55352936 -141842496 + ID4_ SINE ID 13 83 0 8 1007 2182 97 229 3 chr1 55352950 55353313 -141842119 + RLTR44B LTR ERVK 1 445 -4 8 1007 558 137 41 49 chr1 55353313 55353436 -141841996 + RLTR44-int LTR ERVK 25 146 -2666 8 1007 470 97 14 0 chr1 55353439 55353511 -141841921 + RLTR44-int LTR ERVK 871 943 -1869 8 1007 5059 118 23 16 chr1 55353533 55354502 -141840930 + RLTR44-int LTR ERVK 659 1489 -1323 8 1007 5405 42 0 0 chr1 55354575 55355240 -141840192 + RLTR44-int LTR ERVK 2145 2809 -3 8 1007 482 82 0 0 chr1 55355242 55355315 -141840117 - RLTR44A LTR ERVK -332 73 1 8 1007 655 83 0 53 chr1 55355590 55355704 -141839728 - L1Md_F2 LINE L1 -12 6570 6463 8 1007 381 274 93 37 chr1 55356500 55356746 -141838686 + L1MB4 LINE L1 5919 6178 -2 8 1007 873 243 53 8 chr1 55357478 55357756 -141837676 + L1M1 LINE L1 5473 5763 -540 8 1007 427 245 72 42 chr1 55357771 55357971 -141837461 - MER33 DNA MER1_type -126 198 1 8 1007 25 0 0 0 chr1 55358989 55359014 -141836418 + AT_rich Low_complexity Low_complexity 1 25 0 8 1007 542 246 85 19 chr1 55359708 55359840 -141835592 + L1MA9 LINE L1 5502 5643 -648 8 1007 191 88 29 0 chr1 55359840 55359874 -141835558 + (CATA)n Simple_repeat Simple_repeat 2 36 0 8 1007 384 40 0 0 chr1 55359879 55359929 -141835503 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1007 542 246 85 19 chr1 55359929 55360001 -141835431 + L1MA9 LINE L1 5649 5725 -566 8 1007 304 338 12 12 chr1 55360001 55360082 -141835350 + ID4 SINE ID 1 81 -2 8 1007 1178 232 130 22 chr1 55360112 55360637 -141834795 + L1MA9 LINE L1 5715 6311 -1 8 1007 308 295 0 0 chr1 55361233 55361311 -141834121 + ID4_ SINE ID 4 81 -2 8 1007 226 195 63 24 chr1 55362010 55362136 -141833296 + (TATAA)n Simple_repeat Simple_repeat 2 132 0 8 1007 248 316 8 86 chr1 55362288 55362416 -141833016 - MIRc SINE MIR -39 229 112 8 1007 614 264 19 120 chr1 55362631 55362803 -141832629 + L1M4 LINE L1 4941 5096 -1050 8 1007 3790 98 37 18 chr1 55362803 55363373 -141832059 - Lx LINE L1 -12 6642 6062 8 1007 614 264 19 120 chr1 55363373 55363574 -141831858 + L1M4 LINE L1 5097 5276 -870 8 1007 26 0 0 0 chr1 55363576 55363602 -141831830 + AT_rich Low_complexity Low_complexity 1 26 0 8 1007 7986 71 40 17 chr1 55363633 55364768 -141830664 + Lx3_Mus LINE L1 5849 7009 0 8 1007 384 196 43 0 chr1 55365048 55365140 -141830292 - L1MA4A LINE L1 -405 5898 5803 8 1007 233 179 101 29 chr1 55365143 55365212 -141830220 + RLTR22_Mur LTR ERVK 1303 1376 -472 8 1007 626 261 50 34 chr1 55365221 55365519 -141829913 - L1MA4A LINE L1 -703 5597 5295 8 1007 1139 272 82 7 chr1 55365574 55365978 -141829454 - L1MA4A LINE L1 -1193 4950 4517 8 1007 225 302 39 78 chr1 55365978 55366107 -141829325 + RMER15 LTR ERVL 2 125 -450 9 1007 846 283 72 31 chr1 55366164 55366456 -141828976 + RMER15 LTR ERVL 272 575 0 9 1007 38 39 0 0 chr1 55366689 55366741 -141828691 + AT_rich Low_complexity Low_complexity 1 52 0 9 1007 206 0 69 0 chr1 55366935 55366964 -141828468 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1007 222 37 0 0 chr1 55367086 55367113 -141828319 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 9 1007 1756 232 49 3 chr1 55367119 55367504 -141827928 - Lx6 LINE L1 -170 7290 6888 9 1007 1139 112 20 36 chr1 55367698 55367893 -141827539 + Lx2 LINE L1 6806 6997 0 9 1007 1124 272 120 35 chr1 55367996 55368480 -141826952 - RMER15-int LTR ERVL -3771 1228 704 9 1007 259 302 122 20 chr1 55368597 55368695 -141826737 - RMER20B LTR ERVK -47 580 473 9 1007 322 332 82 11 chr1 55368890 55369148 -141826284 - RMER20B LTR ERVK -233 394 95 9 1007 1214 298 64 45 chr1 55369378 55369954 -141825478 + RMER15-int LTR ERVL 1249 1835 -3164 9 1007 867 238 29 0 chr1 55370252 55370276 -141825156 - B3 SINE B2 -38 178 151 9 1007 180 0 0 0 chr1 55370276 55370296 -141825136 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1007 867 238 29 0 chr1 55370296 55370443 -141824989 - B3 SINE B2 -66 150 3 9 1007 51 31 0 0 chr1 55370466 55370531 -141824901 + AT_rich Low_complexity Low_complexity 1 65 0 9 1007 300 269 284 20 chr1 55370763 55370911 -141824521 - MTE2a LTR MaLR -192 187 1 9 1007 1850 267 72 43 chr1 55370943 55371678 -141823754 + Lx8 LINE L1 6713 7468 -5 9 1007 461 290 47 20 chr1 55372016 55372164 -141823268 - B3 SINE B2 -14 202 51 9 1007 5373 84 6 16 chr1 55372164 55373413 -141822019 + L1VL4 LINE L1 405 1639 -1920 9 1007 3587 154 52 3 chr1 55373413 55374052 -141821380 + Lx3_Mus LINE L1 6327 6996 -13 9 1007 10896 88 12 7 chr1 55374124 55374577 -141820855 - L1_Mm LINE L1 -714 5169 4719 9 1007 252 86 0 0 chr1 55374577 55374612 -141820820 + (CAGTA)n Simple_repeat Simple_repeat 4 38 0 9 1007 10896 88 12 7 chr1 55374612 55374967 -141820465 - L1_Mm LINE L1 -1165 4718 4354 9 1007 2979 23 0 6 chr1 55374967 55375315 -141820117 - ORR1A0 LTR MaLR 0 346 1 9 1007 10896 88 12 7 chr1 55375315 55376139 -141819293 - L1_Mm LINE L1 -1530 4353 3529 9 1007 6129 70 68 1 chr1 55376150 55377447 -141817985 + L1_Mus2 LINE L1 5174 6564 -2 9 1007 11873 78 20 54 chr1 55377541 55378344 -141817088 + L1VL4 LINE L1 1646 2434 -1125 9 1007 1130 75 7 0 chr1 55378344 55378490 -141816942 - B1_Mm SINE Alu 0 147 1 9 1007 11873 78 20 54 chr1 55378490 55379667 -141815765 + L1VL4 LINE L1 2435 3559 0 9 1007 231 182 132 29 chr1 55379900 55379968 -141815464 - ID4_ SINE ID -6 77 3 9 1007 223 284 26 51 chr1 55380148 55380159 -141815273 - ID SINE ID -145 79 4 9 1007 244 292 0 30 chr1 55380159 55380226 -141815206 - ID4 SINE ID -15 68 4 9 1007 251 320 147 52 chr1 55380232 55380423 -141815009 - B4A SINE B4 0 292 84 9 1007 666 102 35 35 chr1 55381462 55381604 -141813828 - L1_Mus3 LINE L1 -6 6632 6491 9 1007 3148 133 6 13 chr1 55381604 55382676 -141812756 - L1Md_F LINE L1 -2175 1642 578 9 1007 3254 100 0 0 chr1 55382731 55383182 -141812250 - L1_Mus3 LINE L1 -131 6507 6057 9 1007 241 364 30 37 chr1 55383277 55383411 -141812021 + MER20 DNA MER1_type 86 218 -1 9 1007 9496 73 13 8 chr1 55384165 55385785 -141809647 + Lx3_Mus LINE L1 5368 6993 -16 9 1007 409 122 78 0 chr1 55385799 55385889 -141809543 + Lx2B LINE L1 6904 7000 0 9 1007 12209 142 102 37 chr1 55385884 55386203 -141809229 + L1_Mus3 LINE L1 3183 3490 -2393 9 1007 627 14 0 0 chr1 55386203 55386275 -141809157 + (GAA)n Simple_repeat Simple_repeat 2 73 0 9 1007 12209 142 102 37 chr1 55386275 55386482 -141808950 + L1_Mus3 LINE L1 3491 3697 -2186 9 1007 279 0 0 0 chr1 55386482 55386513 -141808919 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1007 12209 124 93 25 chr1 55386513 55389203 -141806229 + L1_Mus3 LINE L1 3698 6638 0 9 1007 2628 160 93 15 chr1 55389226 55389828 -141805604 + L1_Mur3 LINE L1 4282 4930 -950 9 1007 1754 213 121 50 chr1 55389833 55390494 -141804938 + Lx9 LINE L1 3979 4686 -1161 9 1007 552 233 288 0 chr1 55390499 55390662 -141804770 + B3 SINE B2 1 210 -6 9 1007 2427 182 48 16 chr1 55390686 55390712 -141804720 + Lx9 LINE L1 5260 5284 -563 9 1007 988 84 0 29 chr1 55390712 55390883 -141804549 + (GAA)n Simple_repeat Simple_repeat 3 168 0 9 1007 2427 196 53 18 chr1 55390883 55391592 -141803840 + Lx9 LINE L1 5285 6052 -1592 9 1007 1993 215 145 30 chr1 55391613 55392213 -141803219 + Lx9 LINE L1 6160 6828 -816 9 1007 288 0 0 0 chr1 55392738 55392770 -141802662 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1007 3853 188 52 1 chr1 55392770 55393558 -141801874 + Lx9 LINE L1 6808 7635 -9 9 1007 597 273 45 60 chr1 55393717 55393916 -141801516 - B3A SINE B2 -1 197 2 9 1007 236 174 0 42 chr1 55393926 55393974 -141801458 - B1F SINE Alu 0 149 104 9 1007 441 0 0 0 chr1 55394075 55394124 -141801308 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1007 2240 196 30 21 chr1 55394290 55394760 -141800672 + RLTR11A2 LTR ERVK 1 474 -53 9 1007 6868 124 96 17 chr1 55394760 55396015 -141799417 + Lx4A LINE L1 5704 7058 0 9 1007 292 138 35 0 chr1 55396093 55396151 -141799281 + RLTR11A2 LTR ERVK 468 528 0 9 1007 298 312 21 11 chr1 55396166 55396260 -141799172 + Charlie2b DNA MER1_type 217 311 -2471 9 1007 253 286 0 41 chr1 55396281 55396354 -141799078 + Charlie2b DNA MER1_type 590 659 -2123 9 1007 353 214 321 0 chr1 55397111 55397223 -141798209 + RSINE1 SINE B4 1 148 -17 9 1007 1043 90 20 7 chr1 55397711 55397857 -141797575 - B1_Mus1 SINE Alu 0 148 1 9 1007 41 48 0 0 chr1 55397895 55397957 -141797475 + AT_rich Low_complexity Low_complexity 1 62 0 9 1007 529 199 5 1 chr1 55398017 55398127 -141797305 - B3 SINE B2 -67 131 18 9 1007 475 302 65 31 chr1 55398110 55398339 -141797093 - B4A SINE B4 -53 239 3 9 1007 26 0 0 0 chr1 55398492 55398518 -141796914 + AT_rich Low_complexity Low_complexity 1 26 0 9 1007 1293 118 8 64 chr1 55398731 55398967 -141796465 - Lx2 LINE L1 0 6997 6775 9 1007 859 111 0 0 chr1 55398967 55399093 -141796339 - Lx2 LINE L1 -354 6643 6518 9 1007 635 235 36 17 chr1 55399162 55399412 -141796020 + Lx9 LINE L1 5630 5917 -1727 9 1007 381 146 61 0 chr1 55399611 55399693 -141795739 + Lx7 LINE L1 5212 5298 -582 9 1007 3888 49 14 0 chr1 55399688 55400197 -141795235 - L1Md_F2 LINE L1 -418 6164 5649 9 1007 3078 73 5 0 chr1 55400197 55400629 -141794803 + L1_Mus1 LINE L1 6162 6567 0 9 1007 6794 204 71 36 chr1 55400629 55402680 -141792752 + Lx7 LINE L1 5290 7432 -264 9 1007 564 56 0 0 chr1 55402762 55402834 -141792598 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1007 476 330 162 0 chr1 55403396 55403587 -141791845 - ID_B1 SINE B4 0 224 3 9 1007 990 300 142 5 chr1 55403671 55404080 -141791352 - MER82 DNA MER2_type -7 646 182 9 1007 323 373 69 69 chr1 55404202 55404464 -141790968 + ORR1E LTR MaLR 64 325 -34 9 1007 568 238 84 56 chr1 55404499 55404677 -141790755 - MER82 DNA MER2_type -469 184 2 9 1007 25 0 0 0 chr1 55404684 55404709 -141790723 + AT_rich Low_complexity Low_complexity 1 25 0 9 1007 4094 70 37 0 chr1 55404964 55405510 -141789922 - L1_Mus3 LINE L1 -4 6634 6069 9 1007 234 296 0 0 chr1 55405559 55405613 -141789819 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1007 295 250 29 0 chr1 55406191 55406259 -141789173 - ID4 SINE ID -12 71 2 9 1007 1351 87 0 35 chr1 55406360 55406562 -141788870 + B2_Mm2 SINE B2 1 195 0 9 1007 239 289 30 40 chr1 55406729 55406830 -141788602 + PB1D10 SINE Alu 18 117 0 9 1007 238 222 84 0 chr1 55407019 55407087 -141788345 - ID SINE ID -209 83 10 9 1007 28 0 0 0 chr1 55407107 55407135 -141788297 + AT_rich Low_complexity Low_complexity 1 28 0 9 1007 750 24 524 0 chr1 55407135 55407261 -141788171 - B2_Mm1a SINE B2 0 193 2 9 1007 341 219 108 27 chr1 55407295 55407460 -141787972 - L1M2 LINE L1 -1217 4926 4752 9 1007 417 240 167 0 chr1 55407469 55407619 -141787813 - L1MA4A LINE L1 -369 5934 5760 9 1007 522 285 99 21 chr1 55407613 55408128 -141787304 - L1MA4A LINE L1 -363 5484 4984 9 1007 526 197 202 25 chr1 55408128 55408304 -141787128 - B3 SINE B2 -18 177 1 9 1007 622 265 176 39 chr1 55408420 55408828 -141786604 - L1MA4A LINE L1 -2457 3390 2950 9 1007 1985 141 102 34 chr1 55408828 55409211 -141786221 + RLTR9E LTR ERVK 1 409 0 9 1007 622 265 176 39 chr1 55409211 55409680 -141785752 - L1MA4A LINE L1 -3179 2964 2402 9 1007 1813 186 18 0 chr1 55409680 55410019 -141785413 - ORR1C1 LTR MaLR -33 345 1 9 1007 5828 216 26 43 chr1 55410019 55410064 -141785368 - ORR1C1-int LTR MaLR 0 1370 1331 9 1007 3188 26 48 0 chr1 55410064 55410442 -141784990 + MTA_Mm LTR MaLR 1 396 0 9 1007 5828 216 26 43 chr1 55410442 55410474 -141784958 - ORR1C1-int LTR MaLR -40 1330 1300 9 1007 1884 60 48 4 chr1 55410474 55410726 -141784706 + L1_Mus1 LINE L1 6305 6567 0 9 1007 5828 216 26 43 chr1 55410726 55411981 -141783451 - ORR1C1-int LTR MaLR -71 1299 60 9 1007 360 0 0 0 chr1 55412256 55412296 -141783136 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1007 258 32 0 0 chr1 55414039 55414070 -141781362 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1007 258 275 58 0 chr1 55414081 55414150 -141781282 - ID SINE ID -150 74 2 9 1007 2558 101 3 3 chr1 55414166 55414553 -141780879 - L1_Mm LINE L1 -594 5289 4903 9 1007 497 34 0 0 chr1 55414575 55414634 -141780798 + L1Md_F2 LINE L1 5528 5586 -297 9 1007 8218 30 20 0 chr1 55414634 55415610 -141779822 + L1Md_F2 LINE L1 5587 6582 0 9 1007 7262 67 6 1 chr1 55415644 55416890 -141778542 + L1_Mus2 LINE L1 5309 6566 0 9 1007 975 280 112 3 chr1 55417896 55418183 -141777249 + MER90a LTR ERV1 3 320 -294 9 1007 434 119 0 15 chr1 55418381 55418449 -141776983 + B1_Mus2 SINE Alu 81 147 0 9 1007 21 36 0 0 chr1 55419627 55419655 -141775777 + GC_rich Low_complexity Low_complexity 1 28 0 9 1007 244 265 23 29 chr1 55420258 55420429 -141775003 + (CGG)n Simple_repeat Simple_repeat 2 171 0 9 1007 623 193 39 103 chr1 55420753 55420885 -141774547 + B1_Mur2 SINE Alu 3 134 -15 9 1007 495 33 0 0 chr1 55420885 55420946 -141774486 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 9 1007 623 193 39 103 chr1 55420946 55420969 -141774463 + B1_Mur2 SINE Alu 135 148 -1 9 1007 2135 200 90 8 chr1 55422014 55422493 -141772939 - RLTR11A2 LTR ERVK -9 518 1 9 1007 521 214 59 8 chr1 55422521 55422639 -141772793 + PB1 SINE Alu 1 124 -3 9 1007 432 0 0 0 chr1 55422884 55422932 -141772500 + (TTA)n Simple_repeat Simple_repeat 2 49 0 9 1007 339 275 88 40 chr1 55422935 55423060 -141772372 - B1F1 SINE Alu -13 136 6 9 1007 213 255 0 56 chr1 55423116 55423170 -141772262 - RSINE1 SINE B4 -31 134 84 9 1007 184 220 100 0 chr1 55423271 55423321 -141772111 - MIRc SINE MIR -137 131 77 9 1007 14446 23 0 0 chr1 55423345 55425797 -141769635 - L1Md_T LINE L1 0 6582 4131 9 1007 291 349 71 8 chr1 55425972 55426099 -141769333 + ORR1E LTR MaLR 2 136 -223 9 1007 31 0 0 0 chr1 55426099 55426130 -141769302 + AT_rich Low_complexity Low_complexity 1 31 0 9 1007 795 284 131 4 chr1 55427233 55427470 -141767962 + B4A SINE B4 26 292 0 9 1007 243 0 0 0 chr1 55427767 55427794 -141767638 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1007 2138 145 51 30 chr1 55427943 55428313 -141767119 - ORR1C1 LTR MaLR 0 378 1 9 1007 4306 161 52 73 chr1 55428438 55429359 -141766073 + RMER19B LTR ERVK 1 902 0 1 1007 277 228 17 17 chr1 55430039 55430097 -141765335 + URR1B DNA MER1_type 1 58 -167 1 1007 28917 68 16 66 chr1 55430097 55434699 -141760733 + L1VL1 LINE L1 418 4984 -899 1 1007 545 249 144 25 chr1 55434699 55434942 -141760490 + RLTR10A LTR ERVK 140 411 0 1 1007 28917 68 16 66 chr1 55434942 55435547 -141759885 + L1VL1 LINE L1 4985 5586 -297 1 1007 7185 84 10 4 chr1 55435548 55436535 -141758897 + L1Md_F2 LINE L1 5588 6580 -2 1 1007 903 128 139 6 chr1 55436538 55436703 -141758729 + URR1B DNA MER1_type 39 225 0 1 1007 362 326 11 0 chr1 55436711 55436806 -141758626 + PB1D10 SINE Alu 5 100 -17 1 1007 1561 214 39 34 chr1 55436962 55437319 -141758113 - ORR1B2 LTR MaLR -8 359 1 1 1007 222 128 0 0 chr1 55437438 55437477 -141757955 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 1007 518 307 24 60 chr1 55437477 55437701 -141757731 - Lx5 LINE L1 -17 7041 6786 1 1007 677 273 59 0 chr1 55438972 55439159 -141756273 - Lx5 LINE L1 -397 6653 6456 1 1007 609 235 35 114 chr1 55439172 55439374 -141756058 + RMER12 LTR ERVK 994 1179 -143 1 1007 1374 170 7 21 chr1 55439490 55439778 -141755654 - L1_Mur2 LINE L1 -1155 4722 4439 1 1007 30 27 0 0 chr1 55439778 55439815 -141755617 + AT_rich Low_complexity Low_complexity 1 37 0 1 1007 24 32 0 0 chr1 55439917 55439948 -141755484 + AT_rich Low_complexity Low_complexity 1 31 0 1 1007 210 293 0 0 chr1 55440637 55440719 -141754713 + T-rich Low_complexity Low_complexity 1 82 0 1 1007 6371 83 8 2 chr1 55440890 55441783 -141753649 - L1Md_F2 LINE L1 -1 6581 5684 1 125 24179 55 3 0 chr1 55441783 55445899 -141749533 - L1Md_F2 LINE L1 0 6582 2456 1 1008 38 0 0 0 chr1 55445899 55445937 -141749495 + AT_rich Low_complexity Low_complexity 1 38 0 1 1008 4181 41 0 12 chr1 55445937 55446456 -141748976 - L1Md_F2 LINE L1 -3 6579 6067 1 1008 11935 50 1 0 chr1 55446457 55448088 -141747344 + L1Md_F2 LINE L1 4307 5939 -643 1 1008 8505 91 72 7 chr1 55448085 55450060 -141745372 - L1Md_F2 LINE L1 -3413 2470 364 1 1008 270 313 200 20 chr1 55450619 55450769 -141744663 + MER91A DNA Tip100 19 195 -1 1 1008 283 374 60 70 chr1 55451069 55451270 -141744162 - LTR16A LTR ERVL -193 258 60 1 1008 796 163 136 56 chr1 55451568 55451861 -141743571 + RMER6D LTR ERVK 1 354 -366 1 1008 396 299 205 40 chr1 55451932 55452235 -141743197 + ORR1D2 LTR MaLR 6 358 -12 1 1008 1262 136 4 22 chr1 55452235 55452461 -141742971 + L1_Mur1 LINE L1 4865 5086 -800 1 1008 1007 64 13 6 chr1 55452461 55452618 -141742814 + Lx2A LINE L1 6849 7006 -2 1 1008 214 125 42 0 chr1 55453936 55453984 -141741448 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 1 1008 615 168 0 0 chr1 55454254 55454349 -141741083 + B1F SINE Alu 34 128 -21 1 1008 468 0 0 0 chr1 55454361 55454413 -141741019 + (CAGAA)n Simple_repeat Simple_repeat 1 52 0 1 1008 329 311 28 56 chr1 55454615 55454735 -141740697 - B1_Mur2 SINE Alu -9 140 19 1 1008 1755 204 50 10 chr1 55454735 55455137 -141740295 + MTD LTR MaLR 2 419 0 1 1008 329 311 28 56 chr1 55455137 55455159 -141740273 - B1_Mur2 SINE Alu -131 18 2 1 1008 24 53 0 0 chr1 55455252 55455290 -141740142 + AT_rich Low_complexity Low_complexity 1 38 0 1 1008 252 0 0 0 chr1 55455390 55455418 -141740014 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1008 255 125 0 0 chr1 55455418 55455457 -141739975 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1008 268 276 107 62 chr1 55455486 55455598 -141739834 - B1F SINE Alu -1 148 32 1 1008 651 59 0 0 chr1 55455595 55455680 -141739752 + B1_Mur4 SINE Alu 64 148 -2 1 1008 205 130 43 0 chr1 55455680 55455726 -141739706 + (CAA)n Simple_repeat Simple_repeat 1 48 0 1 1008 23 33 0 0 chr1 55456565 55456595 -141738837 + AT_rich Low_complexity Low_complexity 1 30 0 1 1008 21 0 0 0 chr1 55457066 55457087 -141738345 + AT_rich Low_complexity Low_complexity 1 21 0 1 1008 558 272 102 7 chr1 55457197 55457334 -141738098 + RSINE1 SINE B4 6 155 -10 1 1008 210 143 0 0 chr1 55457729 55457764 -141737668 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1008 222 367 44 0 chr1 55459293 55459383 -141736049 + L2a LINE L2 3304 3397 -29 1 1008 1299 82 16 16 chr1 55459383 55459570 -141735862 - B2_Mm1t SINE B2 -6 187 1 1 1008 188 273 0 0 chr1 55460055 55460099 -141735333 - MIRc SINE MIR -119 149 106 1 1008 615 280 19 68 chr1 55460100 55460261 -141735171 + RSINE1 SINE B4 2 154 -11 1 1008 23 33 0 0 chr1 55460280 55460310 -141735122 + AT_rich Low_complexity Low_complexity 1 30 0 1 1008 225 337 42 32 chr1 55460316 55460411 -141735021 - MIRb SINE MIR -156 112 17 1 1008 249 281 11 0 chr1 55461002 55461091 -141734341 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1008 255 323 177 37 chr1 55461595 55461759 -141733673 + MIR3 SINE MIR 16 202 -6 1 1008 26 30 0 0 chr1 55462994 55463027 -141732405 + GC_rich Low_complexity Low_complexity 1 33 0 1 1008 258 221 111 49 chr1 55464975 55465056 -141730376 + PB1D10 SINE Alu 30 115 -2 1 1008 235 283 4 32 chr1 55465858 55465957 -141729475 - MTE2a LTR MaLR -51 328 232 1 1008 365 152 121 0 chr1 55466346 55466412 -141729020 + B1_Mur4 SINE Alu 1 74 -76 1 1008 405 0 0 0 chr1 55466416 55466461 -141728971 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1008 403 157 69 32 chr1 55466989 55467096 -141728336 + ORR1B1 LTR MaLR 71 203 -191 1 1008 466 137 0 0 chr1 55467098 55467171 -141728261 + ORR1B1 LTR MaLR 314 386 -8 1 1008 202 200 0 0 chr1 55467872 55467907 -141727525 - MIRb SINE MIR -190 78 44 1 1008 2467 135 55 12 chr1 55468547 55468951 -141726481 + MTC LTR MaLR 1 421 0 1 1008 35 71 0 0 chr1 55471754 55471824 -141723608 + AT_rich Low_complexity Low_complexity 1 70 0 1 1008 320 301 140 47 chr1 55471925 55472075 -141723357 - MIR SINE MIR -39 223 60 1 1008 262 281 18 0 chr1 55472116 55472173 -141723259 - PB1D9 SINE Alu -62 58 1 1 1008 439 208 12 11 chr1 55473319 55473425 -141722007 - B1_Mur2 SINE Alu 0 149 38 1 1008 504 111 0 0 chr1 55473725 55473806 -141721626 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1008 800 177 14 7 chr1 55474583 55474731 -141720701 + B1_Mur3 SINE Alu 1 149 0 1 1008 1511 225 49 25 chr1 55475338 55475703 -141719729 + ORR1D2 LTR MaLR 1 419 0 1 1008 279 288 0 0 chr1 55476592 55476672 -141718760 - MLT1D LTR MaLR -8 497 418 1 1008 30 45 0 0 chr1 55476961 55477005 -141718427 + AT_rich Low_complexity Low_complexity 1 44 0 1 1008 181 135 19 19 chr1 55477997 55478050 -141717382 + T-rich Low_complexity Low_complexity 4 56 0 1 1008 5363 118 20 32 chr1 55478059 55478910 -141716522 - Lx4A LINE L1 -3 7055 6215 1 1008 4948 128 7 9 chr1 55479714 55480555 -141714877 + L1_Mur2 LINE L1 4181 5019 -858 1 1008 968 110 0 0 chr1 55480565 55480694 -141714738 + B1_Mm SINE Alu 9 137 -10 1 1008 396 0 0 0 chr1 55480694 55480738 -141714694 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1008 213 115 19 77 chr1 55480747 55480851 -141714581 + A-rich Low_complexity Low_complexity 3 100 0 1 1008 3429 141 0 0 chr1 55480862 55481429 -141714003 + L1_Mur2 LINE L1 5006 5572 -305 1 1008 378 173 27 0 chr1 55481926 55482014 -141713418 - L1_Mur2 LINE L1 -524 5362 5267 1 1008 297 128 0 0 chr1 55483200 55483247 -141712185 + (ACTG)n Simple_repeat Simple_repeat 4 50 0 1 1008 1018 210 10 0 chr1 55483351 55483551 -141711881 - B3 SINE B2 -13 203 2 1 1008 592 267 173 0 chr1 55483618 55483809 -141711623 + ID_B1 SINE B4 1 224 0 1 1008 225 0 0 0 chr1 55483844 55483869 -141711563 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1008 326 253 154 0 chr1 55484088 55484179 -141711253 - PB1D10 SINE Alu -10 107 3 1 1008 548 258 8 45 chr1 55484882 55484904 -141710528 - B3A SINE B2 -6 192 174 1 1008 321 47 0 0 chr1 55484904 55484947 -141710485 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1008 548 258 8 45 chr1 55484947 55485058 -141710374 - B3A SINE B2 -25 173 64 1 1008 246 369 93 45 chr1 55485278 55485525 -141709907 + L2 LINE L2 2729 2987 -432 1 1008 778 249 45 0 chr1 55486681 55486882 -141708550 - B3 SINE B2 -6 210 1 1 1008 450 266 202 0 chr1 55487350 55487508 -141707924 - MER53 DNA hAT -2 191 2 1 1008 944 299 92 49 chr1 55487693 55488688 -141706744 + L1MA4A LINE L1 4709 5792 -511 1 1008 207 0 0 0 chr1 55488688 55488711 -141706721 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1008 944 279 108 60 chr1 55488711 55488948 -141706484 + L1MA4A LINE L1 5793 6020 -277 1 1008 293 180 66 0 chr1 55489428 55489489 -141705943 - L1MA5 LINE L1 -371 5929 5865 1 1008 342 309 109 0 chr1 55489494 55489604 -141705828 - ID_B1 SINE B4 -19 205 84 1 1008 425 200 174 53 chr1 55489637 55489769 -141705663 - B1_Mur1 SINE Alu 0 149 2 1 1008 510 280 27 27 chr1 55490196 55490343 -141705089 + RSINE1 SINE B4 3 149 -16 1 1008 27 62 0 0 chr1 55490384 55490432 -141705000 + AT_rich Low_complexity Low_complexity 1 48 0 1 1008 1287 225 137 11 chr1 55491555 55491926 -141703506 + MTD LTR MaLR 1 405 -14 1 1008 1680 171 46 59 chr1 55492569 55492941 -141702491 - ORR1B2 LTR MaLR 0 367 1 1 1008 217 171 11 58 chr1 55493144 55493231 -141702201 + CT-rich Low_complexity Low_complexity 3 85 0 1 1008 783 249 21 11 chr1 55493231 55493415 -141702017 - ID_B1 SINE B4 -49 243 61 1 1008 480 307 32 19 chr1 55494328 55494484 -141700948 - B4A SINE B4 -7 285 128 1 1008 27 0 0 0 chr1 55495397 55495424 -141700008 + AT_rich Low_complexity Low_complexity 1 27 0 1 1008 1167 48 0 7 chr1 55495890 55496037 -141699395 - B1_Mm SINE Alu 0 147 2 1 1008 239 200 215 0 chr1 55496304 55496369 -141699063 - PB1D10 SINE Alu -36 81 3 1 1008 639 39 0 0 chr1 55496407 55496485 -141698947 + (TCC)n Simple_repeat Simple_repeat 2 79 0 1 1008 319 316 184 0 chr1 55496496 55496664 -141698768 - L1MC2 LINE L1 -16 6328 6130 1 1008 730 232 136 74 chr1 55496696 55497049 -141698383 - L1MC2 LINE L1 -381 5963 5589 1 1008 528 16 0 0 chr1 55498138 55498199 -141697233 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1008 333 159 0 0 chr1 55498455 55498518 -141696914 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 1 1008 535 175 68 0 chr1 55498676 55498779 -141696653 - PB1D9 SINE Alu -8 112 3 1 1008 22 35 0 0 chr1 55498785 55498814 -141696618 + AT_rich Low_complexity Low_complexity 1 29 0 1 1008 701 135 6 18 chr1 55498819 55498985 -141696447 + CT-rich Low_complexity Low_complexity 2 165 0 1 1008 672 249 5 91 chr1 55498988 55499187 -141696245 - B3A SINE B2 -16 182 1 1 1008 251 360 62 12 chr1 55499559 55499801 -141695631 - L1MA4A LINE L1 -378 5925 5672 1 1008 24 32 0 0 chr1 55499810 55499841 -141695591 + AT_rich Low_complexity Low_complexity 1 31 0 1 1008 1893 119 71 62 chr1 55501949 55502271 -141693161 + ORR1A3 LTR MaLR 1 325 -1 1 1008 279 0 0 0 chr1 55502773 55502804 -141692628 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1008 1030 86 0 14 chr1 55503620 55503761 -141691671 + B1_Mus1 SINE Alu 1 139 -9 3 1008 414 0 0 0 chr1 55503761 55503807 -141691625 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1008 216 0 0 0 chr1 55504160 55504184 -141691248 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1008 279 79 0 0 chr1 55504515 55504553 -141690879 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1008 806 246 97 48 chr1 55504565 55504834 -141690598 - B4 SINE B4 -10 282 1 7 1008 535 173 11 17 chr1 55506977 55507153 -141688279 + (CA)n Simple_repeat Simple_repeat 1 175 0 8 1008 465 210 24 17 chr1 55507194 55507495 -141687937 + (CA)n Simple_repeat Simple_repeat 1 303 0 8 1008 342 0 0 0 chr1 55507495 55507533 -141687899 + (GA)n Simple_repeat Simple_repeat 2 39 0 9 1008 762 179 56 155 chr1 55509092 55509324 -141686108 + MTD LTR MaLR 2 210 -209 1 1008 271 222 134 17 chr1 55509432 55509551 -141685881 + L1ME2 LINE L1 6015 6147 -17 1 1008 2340 227 85 28 chr1 55509574 55510317 -141685115 - Lx7 LINE L1 -1 7695 6854 1 1008 1087 171 5 28 chr1 55510321 55510532 -141684900 + MTD LTR MaLR 214 419 0 1 1008 378 0 0 0 chr1 55511697 55511739 -141683693 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1008 1501 254 106 31 chr1 55511755 55512295 -141683137 - L1MB3 LINE L1 -10 6173 5594 1 1008 186 271 186 16 chr1 55512499 55512623 -141682809 + L2a LINE L2 3082 3226 -161 1 1008 225 255 74 11 chr1 55512879 55512974 -141682458 + L2a LINE L2 3317 3417 -9 1 1008 943 157 6 6 chr1 55513267 55513447 -141681985 + CT-rich Low_complexity Low_complexity 1 180 0 1 1008 1096 70 0 7 chr1 55513450 55513593 -141681839 - B1_Mus1 SINE Alu -5 143 2 1 1008 2304 202 115 42 chr1 55513602 55514333 -141681099 - Lx7 LINE L1 0 7696 6864 1 1008 30 0 0 0 chr1 55514530 55514560 -141680872 + AT_rich Low_complexity Low_complexity 1 30 0 1 1008 3562 15 5 0 chr1 55514565 55514959 -141680473 + MTA_Mm LTR MaLR 1 396 0 2 1008 1637 169 125 0 chr1 55515428 55515771 -141679661 - ORR1B1 LTR MaLR -8 386 1 2 1008 7292 54 0 0 chr1 55515807 55516711 -141678721 - L1_Mus1 LINE L1 -113 6454 5551 2 1008 288 0 0 0 chr1 55516765 55516797 -141678635 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1008 645 237 162 18 chr1 55516798 55517026 -141678406 - B4A SINE B4 -21 271 11 2 1008 5988 64 5 8 chr1 55517753 55518526 -141676906 - L1Md_F2 LINE L1 0 6582 5812 2 1008 23 33 0 0 chr1 55521335 55521365 -141674067 + AT_rich Low_complexity Low_complexity 1 30 0 2 1008 818 174 42 0 chr1 55521535 55521679 -141673753 + B1_Mur4 SINE Alu 1 150 0 2 1008 207 0 0 0 chr1 55521688 55521711 -141673721 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 2 1008 246 62 0 0 chr1 55521711 55521742 -141673690 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 2 1008 10192 2 0 0 chr1 55522252 55524059 -141671373 - L1Md_A LINE L1 0 6582 4776 3 1008 424 81 27 0 chr1 55525449 55525523 -141669909 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 1008 201 167 0 0 chr1 55525767 55525803 -141669629 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1008 292 314 0 23 chr1 55526048 55526129 -141669303 + B1F1 SINE Alu 5 83 -66 3 1008 669 25 0 0 chr1 55526129 55526208 -141669224 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1008 9444 12 0 0 chr1 55527249 55529005 -141666427 - L1Md_T LINE L1 0 6582 4827 3 1008 238 343 215 10 chr1 55529380 55529580 -141665852 + LTR16C LTR ERVL 237 477 -12 3 1008 1149 226 123 25 chr1 55530590 55530907 -141664525 - ORR1E LTR MaLR -4 355 8 3 1008 1190 35 14 0 chr1 55530942 55531086 -141664346 + B1_Mus2 SINE Alu 2 147 0 3 1008 3658 186 126 108 chr1 55531165 55531561 -141663871 - Lx7 LINE L1 0 7696 7352 3 1008 1150 50 22 0 chr1 55531561 55531700 -141663732 + B1_Mm SINE Alu 1 142 -5 4 1008 3658 186 126 108 chr1 55531700 55531711 -141663721 - Lx7 LINE L1 -345 7351 7348 3 1008 276 30 0 0 chr1 55531711 55531744 -141663688 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1008 3658 186 126 108 chr1 55531744 55532490 -141662942 - Lx7 LINE L1 -349 7347 6521 3 1008 3175 111 95 60 chr1 55532477 55533110 -141662322 - L1_Mur3 LINE L1 -3220 2660 2006 4 1008 38798 29 0 0 chr1 55533126 55539572 -141655860 - L1Md_T LINE L1 0 6585 43 4 1008 1321 169 277 0 chr1 55539573 55539869 -141655563 - L1_Mur3 LINE L1 -3860 2020 1643 4 1008 371 327 9 0 chr1 55539978 55540088 -141655344 + PB1D10 SINE Alu 2 112 -5 4 1008 338 120 40 0 chr1 55540093 55540143 -141655289 + L1_Mur3 LINE L1 283 334 -7378 4 1008 251 234 94 0 chr1 55540146 55540210 -141655222 - L1_Mur3 LINE L1 -6702 1026 957 4 1008 260 271 71 0 chr1 55540179 55540249 -141655183 - L1_Mur3 LINE L1 -7101 627 553 4 1008 199 234 114 0 chr1 55541041 55541120 -141654312 - MIRb SINE MIR -146 130 43 4 1008 2270 146 24 38 chr1 55541120 55541540 -141653892 + MTC LTR MaLR 8 421 0 4 1008 236 295 25 25 chr1 55541610 55541690 -141653742 + ID4_ SINE ID 3 82 -1 4 1008 299 331 131 12 chr1 55543708 55543876 -141651556 - MLT1C LTR MaLR -5 462 275 4 1008 378 0 0 0 chr1 55543876 55543918 -141651514 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 5 1008 471 277 9 18 chr1 55543931 55544045 -141651387 - B1_Mur3 SINE Alu -36 113 1 5 1008 662 147 0 0 chr1 55544265 55544374 -141651058 - B3 SINE B2 -94 122 14 5 1008 1822 118 28 34 chr1 55544375 55544699 -141650733 + RLTRETN_Mm LTR ERVK 1 322 0 5 1008 234 0 0 0 chr1 55544919 55544945 -141650487 + (C)n Simple_repeat Simple_repeat 1 26 0 5 1008 237 172 46 15 chr1 55546609 55546674 -141648758 + A-rich Low_complexity Low_complexity 5 71 0 5 1008 843 214 102 5 chr1 55546789 55546986 -141648446 + B3 SINE B2 1 216 0 5 1008 394 280 76 12 chr1 55547558 55547780 -141647652 + B4 SINE B4 8 274 -18 5 1008 237 65 0 0 chr1 55547799 55547830 -141647602 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1008 204 40 0 0 chr1 55548301 55548326 -141647106 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1008 1230 14 0 0 chr1 55548337 55548476 -141646956 - B1_Mus2 SINE Alu -8 139 1 6 1008 7822 46 2 0 chr1 55549398 55550333 -141645099 - L1Md_F2 LINE L1 -2 6580 5644 6 1008 578 176 0 0 chr1 55550330 55550432 -141645000 + L1Md_F LINE L1 404 505 -6014 6 1008 22 0 0 0 chr1 55550432 55550454 -141644978 + AT_rich Low_complexity Low_complexity 1 22 0 6 1008 574 143 1 0 chr1 55551943 55552035 -141643397 + B1_Mus1 SINE Alu 34 127 -23 6 1008 330 26 0 0 chr1 55552035 55552074 -141643358 + (CCA)n Simple_repeat Simple_repeat 1 39 0 6 1008 554 162 53 26 chr1 55552074 55552095 -141643337 + B1_Mur4 SINE Alu 128 150 0 6 1008 3219 53 5 25 chr1 55552137 55552582 -141642850 - RLTR1B LTR ERV1 -76 436 1 6 1008 14245 94 36 44 chr1 55552582 55555324 -141640108 - RLTR1B-int LTR ERV1 -299 4391 1 6 1008 1032 100 63 9 chr1 55555324 55555506 -141639926 - RLTR1B LTR ERV1 0 624 360 6 1008 881 72 0 31 chr1 55555506 55555635 -141639797 + B2_Mm2 SINE B2 1 125 -70 6 1008 768 218 69 0 chr1 55556891 55557065 -141638367 + MER102b DNA MER1_type 4 189 -152 6 1008 336 379 126 34 chr1 55559399 55559749 -141635683 + L2a LINE L2 2665 3046 -373 6 1008 838 309 56 44 chr1 55559788 55560222 -141635210 - MLT2B1 LTR ERVL -1 553 18 7 1008 190 270 14 87 chr1 55560225 55560294 -141635138 + L2a LINE L2 3100 3163 -263 6 1008 311 0 0 25 chr1 55561345 55561385 -141634047 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 7 1008 2800 291 55 39 chr1 55561669 55563021 -141632411 - Lx8 LINE L1 -636 6837 5494 7 1008 286 230 56 7 chr1 55563432 55563518 -141631914 + MIR SINE MIR 120 208 -60 7 1008 423 0 0 0 chr1 55564301 55564348 -141631084 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1008 969 148 7 0 chr1 55566259 55566408 -141629024 - B1_Mur4 SINE Alu 0 150 1 7 1008 561 281 7 7 chr1 55566458 55566598 -141628834 - MER5A1 DNA MER1_type 0 166 27 7 1008 489 299 118 49 chr1 55566944 55567286 -141628146 - MTE2a LTR MaLR -1 418 20 7 1008 405 301 20 8 chr1 55567561 55567818 -141627614 + (TG)n Simple_repeat Simple_repeat 1 260 0 7 1008 773 311 20 30 chr1 55567844 55568139 -141627293 - B4A SINE B4 0 292 1 7 1008 232 299 54 54 chr1 55569086 55569270 -141626162 - ORR1E LTR MaLR -53 306 123 8 1008 1065 34 20 0 chr1 55569632 55569778 -141625654 + (TG)n Simple_repeat Simple_repeat 2 150 0 8 1008 375 344 5 48 chr1 55570885 55571074 -141624358 - B3A SINE B2 -16 182 2 8 1008 322 74 37 0 chr1 55571402 55571456 -141623976 + (CATA)n Simple_repeat Simple_repeat 4 59 0 8 1008 24 77 0 0 chr1 55571560 55571612 -141623820 + AT_rich Low_complexity Low_complexity 1 52 0 8 1008 350 91 18 0 chr1 55571618 55571673 -141623759 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1008 355 273 48 48 chr1 55571675 55571821 -141623611 - RSINE1 SINE B4 -18 147 2 8 1008 189 0 0 0 chr1 55572633 55572654 -141622778 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8 1008 326 361 45 11 chr1 55572784 55572963 -141622469 + MIR SINE MIR 16 200 -62 8 1008 911 264 122 58 chr1 55573418 55573812 -141621620 - RLTR23 LTR ERV1 -4 426 8 8 1008 343 299 20 26 chr1 55574220 55574371 -141621061 - CR1_Mam LINE CR1 -622 1582 1433 9 1009 492 179 0 0 chr1 55574750 55574834 -141620598 - PB1D9 SINE Alu -13 107 24 9 1009 187 321 107 36 chr1 55574838 55574922 -141620510 - L2a LINE L2 -44 3382 3293 9 1009 22 35 0 0 chr1 55575019 55575048 -141620384 + AT_rich Low_complexity Low_complexity 1 29 0 9 1009 5877 85 10 1 chr1 55575056 55575860 -141619572 - L1_Mus3 LINE L1 -6 6632 5822 9 1009 314 336 0 17 chr1 55576377 55576492 -141618940 - PB1D10 SINE Alu -2 115 3 9 1009 2403 72 6 3 chr1 55576713 55577032 -141618400 - L1_Mus3 LINE L1 0 6638 6319 9 1009 198 235 57 38 chr1 55578389 55578442 -141616990 - MIR3 SINE MIR -143 65 12 9 1009 1224 196 0 0 chr1 55579900 55580114 -141615318 + B3 SINE B2 3 216 0 9 1009 285 51 0 0 chr1 55580123 55580162 -141615270 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 9 1009 505 211 45 30 chr1 55580199 55580331 -141615101 + B1F SINE Alu 5 138 -11 1 1009 189 121 0 0 chr1 55580342 55580375 -141615057 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 1 1009 588 245 137 27 chr1 55580485 55580741 -141614691 + B4 SINE B4 1 284 -8 1 1009 678 226 52 31 chr1 55581545 55581737 -141613695 - B3A SINE B2 0 198 3 1 1009 26 0 0 0 chr1 55581749 55581775 -141613657 + AT_rich Low_complexity Low_complexity 1 26 0 1 1009 699 236 94 34 chr1 55581810 55582172 -141613260 + Lx9 LINE L1 5681 6097 -1547 1 1009 2494 134 17 10 chr1 55582223 55582629 -141612803 + MTC LTR MaLR 13 421 0 1 1009 824 208 91 39 chr1 55582683 55582913 -141612519 + Lx9 LINE L1 6322 6563 -1081 1 1009 423 275 38 66 chr1 55583512 55583695 -141611737 - MER5B DNA MER1_type 0 178 1 1 1009 1613 181 172 64 chr1 55583776 55583839 -141611593 - RLTR20A LTR ERVK -25 516 441 1 1009 405 54 0 0 chr1 55583839 55583895 -141611537 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1009 1613 181 172 64 chr1 55583895 55584297 -141611135 - RLTR20A LTR ERVK -101 440 2 1 1009 279 243 68 0 chr1 55585280 55585354 -141610078 - ID4 SINE ID -3 80 2 1 1009 377 70 18 0 chr1 55585439 55585496 -141609936 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1009 237 287 18 106 chr1 55586340 55586453 -141608979 + MIRb SINE MIR 118 220 -48 1 1009 614 242 16 0 chr1 55586979 55587107 -141608325 - B3 SINE B2 -10 206 77 1 1009 387 259 254 60 chr1 55587107 55587292 -141608140 - B4A SINE B4 -71 221 1 1 1009 526 262 197 0 chr1 55587319 55587502 -141607930 - ID_B1 SINE B4 -1 223 5 1 1009 451 298 32 32 chr1 55588109 55588234 -141607198 + PB1 SINE Alu 1 125 -2 1 1009 305 326 164 4 chr1 55588260 55588491 -141606941 + B4 SINE B4 3 270 -22 1 1009 624 91 0 0 chr1 55589096 55589184 -141606248 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 1 1009 758 335 164 46 chr1 55589287 55589897 -141605535 - LTR82A LTR ERVL -118 754 73 1 1009 1002 266 3 49 chr1 55590059 55590091 -141605341 - B4A SINE B4 0 292 270 1 1009 399 68 0 0 chr1 55590091 55590150 -141605282 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1009 1002 266 3 49 chr1 55590150 55590421 -141605011 - B4A SINE B4 -23 269 3 1 1009 180 304 100 12 chr1 55590507 55590587 -141604845 - L2c LINE L2 0 3387 3301 1 1009 1508 227 23 51 chr1 55591164 55591595 -141603837 - MTD LTR MaLR 0 419 1 1 1009 6606 27 3 0 chr1 55591742 55592509 -141602923 - L1Md_F2 LINE L1 0 6582 5814 1 1009 3206 139 81 1 chr1 55592776 55593546 -141601886 - Lx5 LINE L1 -892 6166 5325 1 1009 4342 157 67 14 chr1 55593546 55594347 -141601085 + Lx4B LINE L1 6198 7041 -17 1 1009 249 361 75 42 chr1 55594864 55595078 -141600354 + MIRb SINE MIR 27 247 -21 1 1009 13326 54 11 40 chr1 55595138 55597073 -141598359 - MMETn-int LTR ERVK -2964 1880 2 1 1009 2103 85 9 51 chr1 55597074 55597410 -141598022 - RLTRETN_Mm LTR ERVK 0 322 1 1 1009 224 170 0 41 chr1 55597731 55597780 -141597652 + CT-rich Low_complexity Low_complexity 6 52 0 1 1009 2914 262 87 35 chr1 55597839 55598647 -141596785 + L1MC3 LINE L1 5505 6362 -1423 1 1009 3257 106 105 28 chr1 55598647 55599180 -141596252 + L1_Mus3 LINE L1 6065 6638 0 1 1009 2914 262 87 35 chr1 55599180 55599654 -141595778 + L1MC3 LINE L1 6363 6854 -931 1 1009 429 70 0 0 chr1 55599797 55599854 -141595578 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1009 5113 126 50 18 chr1 55599938 55600867 -141594565 + MurERV4-int LTR ERVK 3076 4033 -1227 1 1009 716 318 35 15 chr1 55600897 55601098 -141594334 - B4A SINE B4 -86 206 2 1 1009 620 132 9 0 chr1 55601209 55601315 -141594117 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1 1009 591 293 17 40 chr1 55601318 55601617 -141593815 + L1MB8 LINE L1 5701 5992 -186 1 1009 21497 116 7 130 chr1 55602060 55608284 -141587148 - L1_Mus2 LINE L1 -1 6565 1174 1 1009 3207 48 0 0 chr1 55608284 55608677 -141586755 - L1Md_F2 LINE L1 -12 6570 6178 1 1009 6293 115 24 0 chr1 55608677 55609470 -141585962 - L1_Mus2 LINE L1 -5484 1173 358 1 1009 505 266 35 35 chr1 55609591 55609852 -141585580 + L1MC3 LINE L1 7524 7784 -1 1 1009 502 307 183 14 chr1 55609866 55610216 -141585216 - LTR37A LTR ERV1 -4 422 14 1 1009 337 285 118 46 chr1 55610661 55610856 -141584576 + MIRb SINE MIR 24 232 -36 1 1009 270 0 0 0 chr1 55611942 55611972 -141583460 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1009 310 205 0 24 chr1 55612362 55612447 -141582985 + CT-rich Low_complexity Low_complexity 1 83 0 1 1009 497 326 15 96 chr1 55612455 55612539 -141582893 - B3A SINE B2 -4 194 119 1 1009 1210 204 134 24 chr1 55612539 55612875 -141582557 + ORR1D1 LTR MaLR 1 373 -1 1 1009 497 326 15 96 chr1 55612875 55612987 -141582445 - B3A SINE B2 -80 118 14 1 1009 31 26 0 0 chr1 55613537 55613575 -141581857 + AT_rich Low_complexity Low_complexity 1 38 0 1 1009 5148 64 42 1 chr1 55613612 55614284 -141581148 - L1_Mus3 LINE L1 -12 6626 5928 1 1009 186 43 0 0 chr1 55614370 55614393 -141581039 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 1009 441 155 46 35 chr1 55614853 55614940 -141580492 - RSINE1 SINE B4 -74 91 4 1 1009 25 0 0 0 chr1 55615797 55615822 -141579610 + AT_rich Low_complexity Low_complexity 1 25 0 1 1009 2669 108 26 35 chr1 55617875 55618298 -141577134 + Lx LINE L1 6234 6652 -2 1 1009 501 179 0 0 chr1 55618590 55618674 -141576758 - B1_Mm SINE Alu -1 146 63 1 1009 450 0 0 0 chr1 55618719 55618769 -141576663 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1009 2036 72 43 4 chr1 55619426 55619704 -141575728 - L1_Mus4 LINE L1 -3 6633 6345 1 1009 2507 70 53 3 chr1 55619706 55620066 -141575366 + L1_Mus4 LINE L1 5961 6338 -298 1 1009 402 312 30 6 chr1 55620399 55620683 -141574749 - L1M3 LINE L1 -801 5490 5198 1 1009 1132 106 6 6 chr1 55621088 55621193 -141574239 + (TTC)n Simple_repeat Simple_repeat 1 105 0 1 1009 1620 0 0 0 chr1 55621193 55621373 -141574059 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1009 1132 106 6 6 chr1 55621373 55621447 -141573985 + (TTC)n Simple_repeat Simple_repeat 1 75 0 1 1009 1135 277 143 24 chr1 55621476 55622190 -141573242 - L1M3 LINE L1 -952 5188 4390 1 1009 229 370 22 0 chr1 55623082 55623174 -141572258 - MIRb SINE MIR -140 128 35 1 1009 621 0 0 0 chr1 55623480 55623549 -141571883 + (CAAAG)n Simple_repeat Simple_repeat 1 69 0 1 1009 882 281 124 0 chr1 55623812 55624118 -141571314 - MLT1B LTR MaLR -15 375 32 1 1009 182 343 14 54 chr1 55624179 55624253 -141571179 - MER5B DNA MER1_type -97 81 11 1 1009 181 269 14 69 chr1 55624782 55624854 -141570578 - L4 LINE RTE -279 1750 1683 1 1009 22 103 0 0 chr1 55625332 55625410 -141570022 + AT_rich Low_complexity Low_complexity 1 78 0 1 1009 242 343 83 31 chr1 55625419 55625536 -141569896 - B1F1 SINE Alu -21 128 1 1 1009 222 37 0 0 chr1 55627603 55627630 -141567802 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1009 394 292 11 0 chr1 55627632 55627721 -141567711 - PB1D10 SINE Alu -13 104 15 1 1009 1025 268 104 11 chr1 55627848 55628214 -141567218 + RMER5 LTR ERV1 39 438 -96 1 1009 328 329 92 35 chr1 55628516 55628658 -141566774 - HAL1 LINE L1 -698 1809 1660 1 1009 288 0 0 0 chr1 55629079 55629111 -141566321 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1009 1234 228 44 27 chr1 55629541 55629834 -141565598 - MTE2b LTR MaLR -1 378 81 1 1009 1266 225 93 23 chr1 55629837 55630191 -141565241 + MTE2b LTR MaLR 1 379 0 1 1009 326 283 104 0 chr1 55630261 55630367 -141565065 + PB1D9 SINE Alu 3 119 -1 1 1009 2175 149 25 11 chr1 55630638 55630843 -141564589 - ORR1C1 LTR MaLR 0 378 166 1 1009 1055 139 0 6 chr1 55630843 55631024 -141564408 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1009 2175 149 25 11 chr1 55631024 55631185 -141564247 - ORR1C1 LTR MaLR -213 165 7 1 1009 519 31 0 0 chr1 55631303 55631368 -141564064 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1009 492 252 0 8 chr1 55631465 55631578 -141563854 - PB1D9 SINE Alu -7 113 9 1 1009 501 97 0 0 chr1 55631752 55631824 -141563608 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 1 1009 347 308 23 23 chr1 55631881 55632014 -141563418 + MIR SINE MIR 66 198 -64 1 1009 238 299 0 56 chr1 55633210 55633281 -141562151 - L2b LINE L2 0 3375 3309 1 1009 197 284 180 36 chr1 55633457 55633596 -141561836 - MER5A DNA MER1_type 0 189 31 1 1009 400 254 42 42 chr1 55633643 55633787 -141561645 - B4A SINE B4 0 292 149 1 1009 5363 60 20 6 chr1 55634566 55635258 -141560174 - L1Md_F2 LINE L1 -2 6580 5879 1 1009 1840 44 81 0 chr1 55635258 55635506 -141559926 + L1Md_F2 LINE L1 5679 5946 -636 1 1009 959 265 74 45 chr1 55635737 55636049 -141559383 - ORR1E LTR MaLR -38 321 1 1 1009 428 354 8 0 chr1 55636274 55636401 -141559031 + ID_B1 SINE B4 95 222 -2 1 1009 279 0 0 0 chr1 55638517 55638548 -141556884 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1009 269 282 152 15 chr1 55639131 55639329 -141556103 - MIRc SINE MIR 0 268 36 1 1009 24 0 0 0 chr1 55639869 55639893 -141555539 + AT_rich Low_complexity Low_complexity 1 24 0 1 1009 254 50 0 24 chr1 55640017 55640058 -141555374 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1009 915 80 0 0 chr1 55640976 55641101 -141554331 + (GA)n Simple_repeat Simple_repeat 2 126 0 1 1009 273 311 29 0 chr1 55641185 55641288 -141554144 - Tigger14a DNA MER2_type -19 305 200 1 1009 723 158 0 0 chr1 55641569 55641696 -141553736 + CT-rich Low_complexity Low_complexity 2 128 0 1 1009 1094 114 48 16 chr1 55641725 55641912 -141553520 - B2_Mm2 SINE B2 -2 193 1 1 1009 260 364 17 17 chr1 55641962 55642082 -141553350 - MER5A DNA MER1_type -5 184 65 1 1009 848 294 50 60 chr1 55642272 55642324 -141553108 - MLT2D LTR ERVL -9 405 369 1 1009 441 0 0 0 chr1 55642324 55642373 -141553059 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1009 207 0 0 0 chr1 55642373 55642395 -141553037 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1009 848 294 50 60 chr1 55642395 55642659 -141552773 - MLT2D LTR ERVL -46 368 92 1 1009 288 261 2 0 chr1 55643080 55643163 -141552269 - B3A SINE B2 -107 88 5 1 1009 247 245 0 0 chr1 55643222 55643271 -141552161 + ID SINE ID 25 73 -151 1 1009 483 18 0 0 chr1 55643271 55643327 -141552105 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1009 541 242 22 43 chr1 55645433 55645571 -141549861 - B1F1 SINE Alu -14 135 1 2 1009 3093 127 29 23 chr1 55645632 55646147 -141549285 - RLTR11A LTR ERVK 0 528 11 2 1009 358 207 0 107 chr1 55646662 55646679 -141548753 - PB1D10 SINE Alu -1 116 104 2 1009 369 0 0 0 chr1 55646679 55646720 -141548712 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 1009 364 211 8 92 chr1 55646720 55646823 -141548609 - B1F1 SINE Alu -14 103 6 2 1009 762 296 74 11 chr1 55647927 55648622 -141546810 - L1M4 LINE L1 -452 5726 4988 2 1009 297 183 0 0 chr1 55648663 55648723 -141546709 + CT-rich Low_complexity Low_complexity 3 62 0 2 1009 261 220 184 29 chr1 55648723 55648826 -141546606 - PB1 SINE Alu -7 120 2 2 1009 226 86 0 0 chr1 55648827 55648862 -141546570 - L1MC LINE L1 -1191 4955 4921 2 1009 183 129 0 0 chr1 55649592 55649623 -141545809 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 1009 369 269 16 65 chr1 55649822 55649945 -141545487 - PB1D10 SINE Alu 0 117 1 2 1009 480 306 30 48 chr1 55650301 55650466 -141544966 - B3A SINE B2 0 198 37 2 1009 23471 99 19 3 chr1 55650789 55654757 -141540675 - L1_Mus2 LINE L1 -419 6147 2142 2 1009 621 235 34 43 chr1 55654803 55655054 -141540378 - L1_Mus2 LINE L1 -5777 839 675 2 1009 339 344 109 13 chr1 55655097 55655253 -141540179 + MLT1I LTR MaLR 1 171 -240 2 1009 293 303 152 0 chr1 55655432 55655597 -141539835 + MER33 DNA MER1_type 1 190 -134 2 1009 21 0 0 0 chr1 55655606 55655627 -141539805 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 26 0 0 0 chr1 55655802 55655828 -141539604 + AT_rich Low_complexity Low_complexity 1 26 0 2 1009 1457 221 23 49 chr1 55656418 55656765 -141538667 - ORR1D2 LTR MaLR -1 369 32 2 1009 3296 103 20 0 chr1 55656802 55657305 -141538127 - Lx3B LINE L1 -572 6401 5889 2 1009 258 56 0 0 chr1 55657860 55657896 -141537536 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1009 847 58 141 0 chr1 55657924 55658045 -141537387 - B1_Mus2 SINE Alu -9 138 1 2 1009 435 218 112 50 chr1 55658546 55658725 -141536707 + RLTR15 LTR ERVK 1 190 -169 2 1009 1257 80 0 0 chr1 55659100 55659275 -141536157 + (TCTCC)n Simple_repeat Simple_repeat 4 178 0 2 1009 216 146 49 0 chr1 55659275 55659316 -141536116 + C-rich Low_complexity Low_complexity 2 44 0 2 1009 811 273 65 10 chr1 55659316 55659516 -141535916 - ID_B1 SINE B4 -9 215 5 2 1009 628 338 117 35 chr1 55659836 55660443 -141534989 - L2 LINE L2 -386 3033 2377 2 1009 359 291 161 25 chr1 55661007 55661169 -141534263 - MIRb SINE MIR -57 211 28 2 1009 276 100 0 0 chr1 55661826 55661866 -141533566 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1009 1368 218 109 22 chr1 55661867 55662270 -141533162 - Lx6 LINE L1 -28 7432 6995 2 1009 216 0 0 0 chr1 55663664 55663688 -141531744 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1009 24 0 0 0 chr1 55664190 55664214 -141531218 + AT_rich Low_complexity Low_complexity 1 24 0 2 1009 1034 66 13 0 chr1 55665014 55665165 -141530267 - L1Md_F2 LINE L1 0 6582 6430 2 1009 255 31 0 0 chr1 55666250 55666282 -141529150 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1009 1064 67 14 27 chr1 55667122 55667633 -141527799 + (TG)n Simple_repeat Simple_repeat 1 503 0 2 1009 280 279 121 87 chr1 55669201 55669350 -141526082 - MIRc SINE MIR -27 241 88 2 1009 324 0 0 0 chr1 55669646 55669682 -141525750 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1009 364 347 74 18 chr1 55669715 55669932 -141525500 + MER102c DNA MER1_type 102 330 -1 2 1009 189 94 0 0 chr1 55670833 55670865 -141524567 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2 1009 189 0 0 0 chr1 55671139 55671160 -141524272 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1009 407 316 19 6 chr1 55671724 55671880 -141523552 + Kanga2_a DNA Tc2 79 236 -652 2 1009 8130 35 0 0 chr1 55671920 55673459 -141521973 - L1Md_T LINE L1 0 6582 5044 2 1009 380 22 0 0 chr1 55673460 55673505 -141521927 + L1Md_T LINE L1 4958 5002 -881 2 1009 484 295 0 54 chr1 55673688 55673826 -141521606 + ID_B1 SINE B4 86 217 -7 2 1009 2130 68 4 0 chr1 55673826 55674089 -141521343 + L1Md_F2 LINE L1 6319 6582 0 2 1009 275 221 198 0 chr1 55674207 55674293 -141521139 - L1M3 LINE L1 -292 5888 5786 2 1009 841 150 45 19 chr1 55674340 55674496 -141520936 + RLTR20B3 LTR ERVK 5 164 -413 2 1009 251 291 39 0 chr1 55674506 55674609 -141520823 + L1MC2 LINE L1 5812 5918 -1867 2 1009 333 185 34 77 chr1 55674787 55674904 -141520528 + L1MC2 LINE L1 5897 6008 -325 2 1009 335 284 140 28 chr1 55674935 55675149 -141520283 + L1MC2 LINE L1 6097 6334 -10 2 1009 2520 201 54 14 chr1 55676429 55676984 -141518448 + RLTR20B3 LTR ERVK 1 577 0 2 1009 619 227 28 14 chr1 55677926 55678069 -141517363 - B1F SINE Alu -3 146 2 2 1009 410 278 28 19 chr1 55678115 55678371 -141517061 - L1ME3B LINE L1 -231 5933 5677 2 1009 641 274 31 25 chr1 55678387 55678548 -141516884 - RSINE1 SINE B4 0 165 4 2 1009 369 0 0 0 chr1 55678583 55678624 -141516808 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1009 913 278 156 53 chr1 55678626 55679044 -141516388 - MT2A LTR ERVL -72 461 1 2 1009 631 313 64 26 chr1 55679630 55679896 -141515536 + Lx8 LINE L1 6982 7257 -216 2 1009 555 271 71 5 chr1 55680047 55680258 -141515174 + Lx8 LINE L1 7249 7473 0 2 1009 2228 174 95 10 chr1 55681155 55681638 -141513794 + RMER5 LTR ERV1 1 524 -10 2 1009 247 362 22 59 chr1 55682116 55682154 -141513278 - MER2 DNA MER2_type -31 314 276 2 1009 3842 149 141 12 chr1 55682154 55682807 -141512625 - RMER19A LTR ERVK 0 737 1 2 1009 330 322 83 39 chr1 55682807 55682989 -141512443 - MER2 DNA MER2_type -65 280 92 2 1009 374 254 18 35 chr1 55683175 55683289 -141512143 + G-rich Low_complexity Low_complexity 2 113 0 2 1009 474 135 0 0 chr1 55683373 55683477 -141511955 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 1009 297 0 0 0 chr1 55683477 55683510 -141511922 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1009 285 306 0 0 chr1 55683811 55683883 -141511549 + (TATG)n Simple_repeat Simple_repeat 3 74 0 2 1009 355 215 147 7 chr1 55683979 55684115 -141511317 - L1MB2 LINE L1 -41 6130 5976 2 1009 1468 278 105 38 chr1 55684120 55684911 -141510521 + Lx7 LINE L1 5045 5921 -1723 2 1009 282 87 0 0 chr1 55684911 55684957 -141510475 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1009 539 295 96 55 chr1 55684957 55685000 -141510432 + Lx7 LINE L1 5922 5969 -1675 2 1009 273 233 100 0 chr1 55685031 55685121 -141510311 + L1MA5 LINE L1 6017 6115 -185 2 1009 1190 284 82 24 chr1 55685206 55685800 -141509632 - L1M4c LINE L1 -1537 4839 4211 2 1009 375 292 59 45 chr1 55685809 55686074 -141509358 - L1M4c LINE L1 -3888 2496 2237 2 1009 26 0 0 0 chr1 55686937 55686963 -141508469 + AT_rich Low_complexity Low_complexity 1 26 0 2 1009 1087 229 99 6 chr1 55687356 55687711 -141507721 + Lx9 LINE L1 7244 7631 -13 2 1009 246 273 68 60 chr1 55687726 55687843 -141507589 + MIR SINE MIR 38 155 -107 2 1009 345 172 0 0 chr1 55688521 55688585 -141506847 + CT-rich Low_complexity Low_complexity 2 65 0 2 1009 372 152 0 0 chr1 55689239 55689305 -141506127 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1009 302 296 119 40 chr1 55689865 55690041 -141505391 + MIRb SINE MIR 48 237 -31 2 1009 791 289 53 11 chr1 55690597 55690860 -141504572 + B4 SINE B4 1 274 -18 2 1009 608 297 38 21 chr1 55691542 55691728 -141503704 - B3A SINE B2 -8 190 2 2 1009 312 143 0 0 chr1 55691731 55691787 -141503645 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1009 189 0 0 0 chr1 55691787 55691808 -141503624 + (GA)n Simple_repeat Simple_repeat 1 21 0 2 1009 230 229 12 136 chr1 55691822 55691903 -141503529 - ID SINE ID -153 71 1 2 1009 1070 237 40 0 chr1 55692149 55692377 -141503055 + Lx5 LINE L1 6265 6501 -549 2 1009 1290 261 92 9 chr1 55692383 55692731 -141502701 + Lx5 LINE L1 6667 7043 -7 2 1009 35 0 0 0 chr1 55692731 55692766 -141502666 + AT_rich Low_complexity Low_complexity 1 35 0 2 1009 1945 271 58 29 chr1 55694077 55694799 -141500633 + L1MA8 LINE L1 5536 6278 -13 2 1009 282 261 25 112 chr1 55694818 55694978 -141500454 + L1MD3 LINE L1 7770 7915 -80 2 1009 1797 174 67 3 chr1 55695152 55695442 -141499990 - ORR1C1 LTR MaLR -3 375 78 2 1009 3031 48 6 6 chr1 55695442 55695799 -141499633 - L1Md_F2 LINE L1 0 6582 6226 2 1009 1797 174 67 3 chr1 55695799 55695837 -141499595 - ORR1C1 LTR MaLR -301 77 28 2 1009 923 226 80 225 chr1 55696723 55697208 -141498224 - MTD LTR MaLR 0 421 7 2 1009 44 0 0 0 chr1 55697299 55697343 -141498089 + AT_rich Low_complexity Low_complexity 1 44 0 2 1009 2847 94 89 59 chr1 55697343 55697783 -141497649 + RLTR11B LTR ERVK 1 453 0 2 1009 300 302 82 31 chr1 55697805 55698000 -141497432 - Lx8 LINE L1 -2 7471 7267 2 1009 820 281 151 36 chr1 55698363 55698888 -141496544 - Lx7 LINE L1 0 7473 6878 2 1009 752 199 53 0 chr1 55698895 55699046 -141496386 + Lx7 LINE L1 6722 6880 -816 2 1009 816 53 263 0 chr1 55699738 55699852 -141495580 - B1_Mm SINE Alu -2 145 2 2 1009 861 130 35 42 chr1 55699989 55700133 -141495299 - B1_Mur3 SINE Alu -6 143 1 2 1009 3482 38 0 15 chr1 55701254 55701660 -141493772 + L1Md_F2 LINE L1 6170 6569 -13 2 1009 1173 88 0 20 chr1 55701729 55701880 -141493552 - B1_Mus1 SINE Alu 0 148 1 2 1009 438 20 0 0 chr1 55703251 55703302 -141492130 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1009 1094 265 130 36 chr1 55703339 55703871 -141491561 - L1MC4 LINE L1 -198 7844 7263 2 1009 436 356 45 51 chr1 55703922 55704393 -141491039 - Lx8 LINE L1 -2 7471 7004 2 1009 802 311 159 8 chr1 55704392 55704794 -141490638 + L1MC4a LINE L1 6482 6944 -938 2 1009 1411 255 97 58 chr1 55705084 55705571 -141489861 - RLTR20B1 LTR ERVK -24 539 34 2 1010 250 302 194 37 chr1 55706011 55706279 -141489153 - LTR82A LTR ERVL -114 758 449 2 1010 5201 105 14 12 chr1 55706320 55707089 -141488343 - RMER17B LTR ERVK -187 771 1 2 1010 588 308 109 34 chr1 55707089 55707422 -141488010 - LTR82A LTR ERVL -493 379 21 2 1010 657 245 44 78 chr1 55707804 55708074 -141487358 + Tigger13a DNA MER2_type 175 435 -336 2 1010 561 302 30 50 chr1 55708123 55708322 -141487110 + B3A SINE B2 1 195 -3 2 1010 180 200 0 0 chr1 55708533 55708573 -141486859 + GA-rich Low_complexity Low_complexity 1 40 0 2 1010 751 356 40 37 chr1 55712396 55712801 -141482631 - Lx8 LINE L1 -115 7358 6953 3 1010 475 186 62 116 chr1 55712801 55712947 -141482485 + MT2B LTR ERVL 127 264 -337 3 1010 859 156 7 0 chr1 55712840 55712981 -141482451 + B1_Mus2 SINE Alu 6 147 0 3 1010 2409 282 62 33 chr1 55712998 55713839 -141481593 - Lx8 LINE L1 -574 6899 6035 3 1010 360 317 42 21 chr1 55713851 55713993 -141481439 + MER58B DNA MER1_type 180 324 -17 3 1010 987 289 59 0 chr1 55714118 55714391 -141481041 + B4 SINE B4 4 292 0 3 1010 194 284 0 19 chr1 55714424 55714528 -141480904 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 3 1010 516 156 0 0 chr1 55714579 55714669 -141480763 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1010 2227 186 30 8 chr1 55715702 55716098 -141479334 - MTD LTR MaLR -14 405 1 3 1010 233 345 51 17 chr1 55716302 55716420 -141479012 - MLT1A LTR MaLR -252 122 1 3 1010 761 212 56 39 chr1 55717669 55717900 -141477532 + L1MA6 LINE L1 6066 6300 0 3 1010 39 74 0 0 chr1 55718594 55718675 -141476757 + AT_rich Low_complexity Low_complexity 1 81 0 3 1010 28 0 0 0 chr1 55718765 55718793 -141476639 + AT_rich Low_complexity Low_complexity 1 28 0 3 1010 1305 83 0 0 chr1 55718877 55719057 -141476375 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1010 1162 256 152 61 chr1 55719057 55719651 -141475781 - Lx7 LINE L1 -274 7422 6775 3 1010 243 241 37 25 chr1 55719636 55719717 -141475715 - L1_Mur3 LINE L1 -6901 811 730 3 1010 381 279 74 37 chr1 55720539 55720647 -141474785 - PB1D7 SINE Alu 0 120 9 3 1010 290 327 108 9 chr1 55720669 55720780 -141474652 + LTR33A_ LTR ERVL 40 161 -370 3 1010 610 113 9 9 chr1 55721350 55721457 -141473975 + (GGGA)n Simple_repeat Simple_repeat 3 109 0 3 1010 441 104 0 0 chr1 55721473 55721550 -141473882 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 3 1010 484 15 31 0 chr1 55722284 55722349 -141473083 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1010 187 228 111 95 chr1 55723364 55723490 -141471942 + MIRb SINE MIR 110 237 -31 3 1010 206 256 260 16 chr1 55724189 55724316 -141471116 - MIRb SINE MIR -23 245 88 3 1010 279 0 0 0 chr1 55724926 55724957 -141470475 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1010 495 316 30 0 chr1 55726733 55726866 -141468566 + ID_B1 SINE B4 82 218 -6 3 1010 4739 80 17 7 chr1 55727331 55727925 -141467507 - L1_Mus2 LINE L1 -1 6565 5966 3 1010 769 272 57 43 chr1 55728736 55729016 -141466416 + B4A SINE B4 1 284 -8 3 1010 2747 238 16 23 chr1 55730372 55730986 -141464446 - Lx5 LINE L1 -38 7012 6403 3 1010 1792 114 20 3 chr1 55730985 55731301 -141464131 + L1_Mur2 LINE L1 4898 5233 -647 3 1010 419 250 82 75 chr1 55733510 55733644 -141461788 + B4A SINE B4 91 225 -67 3 1010 258 268 199 25 chr1 55734661 55734822 -141460610 - MLT1K LTR MaLR -7 588 400 3 1010 7839 38 3 3 chr1 55736022 55736953 -141458479 - L1Md_F2 LINE L1 -16 6566 5636 3 1010 372 346 36 7 chr1 55737257 55737394 -141458038 - ID_B1 SINE B4 -2 222 82 3 1010 344 255 0 4 chr1 55737657 55737922 -141457510 + (TG)n Simple_repeat Simple_repeat 1 263 0 3 1010 223 348 72 29 chr1 55737995 55738134 -141457298 + MIRm SINE MIR 4 148 -128 3 1010 471 130 0 0 chr1 55740238 55740315 -141455117 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1010 393 86 0 0 chr1 55742219 55742277 -141453155 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 3 1010 391 244 106 68 chr1 55742310 55742442 -141452990 - ID_B1 SINE B4 -9 215 79 3 1010 319 298 56 100 chr1 55742574 55742805 -141452627 - L1M5 LINE L1 -2143 4003 3783 3 1010 252 0 0 0 chr1 55744669 55744697 -141450735 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1010 318 327 35 58 chr1 55744868 55745040 -141450392 - LFSINE_Vert SINE SINE -183 276 109 3 1010 3991 144 38 55 chr1 55745289 55746247 -141449185 + RMER17A2 LTR ERVK 1 948 -10 3 1010 209 185 0 36 chr1 55748143 55748199 -141447233 + CT-rich Low_complexity Low_complexity 1 54 0 3 1010 489 295 9 18 chr1 55748610 55748724 -141446708 - RSINE1 SINE B4 -16 149 37 3 1010 209 333 0 0 chr1 55751756 55751819 -141443613 - MIRc SINE MIR -130 138 76 3 1010 612 286 82 71 chr1 55755392 55755659 -141439773 + B4A SINE B4 1 270 -22 3 1010 216 97 0 0 chr1 55755684 55755715 -141439717 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1010 1261 74 11 6 chr1 55756219 55756395 -141439037 - B2_Mm1t SINE B2 -8 185 9 3 1010 192 378 70 20 chr1 55756525 55756625 -141438807 - MIRb SINE MIR -132 136 32 3 1010 622 308 48 52 chr1 55756963 55757254 -141438178 + B4A SINE B4 3 292 0 3 1010 3046 181 127 28 chr1 55757497 55758236 -141437196 - RLTR40 LTR ERVK -5 812 1 3 1010 460 344 128 46 chr1 55759707 55760036 -141435396 - MLT1J LTR MaLR -136 376 21 3 1010 218 362 134 62 chr1 55760145 55760257 -141435175 + PB1 SINE Alu 1 120 -7 3 1010 934 274 30 25 chr1 55760351 55760587 -141434845 + B4A SINE B4 1 237 -55 3 1010 477 205 0 0 chr1 55760633 55760755 -141434677 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1010 696 292 31 20 chr1 55760976 55761172 -141434260 + B3A SINE B2 1 198 0 3 1010 207 287 166 108 chr1 55762474 55762908 -141432524 + L2b LINE L2 2912 3370 -5 3 1010 478 205 143 45 chr1 55763416 55763549 -141431883 - URR1A DNA MER1_type -78 148 3 3 1010 180 0 0 0 chr1 55764195 55764215 -141431217 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1010 1173 108 0 0 chr1 55764224 55764372 -141431060 - B1_Mus1 SINE Alu 0 148 1 3 1010 2028 81 19 4 chr1 55764390 55764651 -141430781 - L1Md_F2 LINE L1 -12 6570 6306 3 1010 281 102 0 39 chr1 55764721 55764772 -141430660 + (CCCCCT)n Simple_repeat Simple_repeat 2 50 0 3 1010 550 222 115 27 chr1 55764776 55764924 -141430508 - B3 SINE B2 -55 161 1 3 1010 635 283 113 77 chr1 55765450 55765814 -141429618 + MTEa LTR MaLR 1 377 -2 3 1010 2103 183 25 30 chr1 55766370 55766775 -141428657 - Lx LINE L1 0 6654 6252 3 1010 365 183 0 0 chr1 55766820 55766880 -141428552 + L1_Mm LINE L1 5047 5106 -777 3 1010 792 258 58 73 chr1 55767554 55767813 -141427619 - Lx9 LINE L1 -431 7213 6959 3 1010 228 319 62 21 chr1 55767915 55768011 -141427421 - LTR33 LTR ERVL -113 402 303 3 1010 207 0 0 0 chr1 55768362 55768385 -141427047 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1010 235 217 0 48 chr1 55769698 55769761 -141425671 + CT-rich Low_complexity Low_complexity 2 61 0 3 1010 370 323 0 153 chr1 55769762 55769912 -141425520 - B1F2 SINE Alu -21 128 2 3 1010 371 312 92 31 chr1 55771140 55771335 -141424097 - MIR SINE MIR -37 225 19 3 1010 220 278 0 0 chr1 55771317 55771371 -141424061 + L3 LINE CR1 3881 3934 -555 3 1010 205 405 130 8 chr1 55771535 55771774 -141423658 + L3 LINE CR1 4113 4380 -109 3 1010 773 176 0 4 chr1 55772698 55772933 -141422499 + (TG)n Simple_repeat Simple_repeat 1 233 0 3 1010 220 286 99 35 chr1 55773352 55773484 -141421948 - MIR SINE MIR -45 163 34 3 1010 1449 261 164 5 chr1 55773759 55774592 -141420840 - RCHARR1 DNA MER1_type -6 968 3 3 1010 777 76 0 0 chr1 55776157 55776262 -141419170 + (GAA)n Simple_repeat Simple_repeat 3 107 0 3 1010 256 293 0 0 chr1 55776262 55776320 -141419112 + G-rich Low_complexity Low_complexity 4 61 0 3 1010 1027 282 81 43 chr1 55776780 55777173 -141418259 - MLT1A1 LTR MaLR 0 408 1 3 1010 23 54 0 0 chr1 55777365 55777402 -141418030 + AT_rich Low_complexity Low_complexity 1 37 0 3 1010 8644 77 17 1 chr1 55777719 55778892 -141416540 - MusHAL1 LINE L1 -627 2085 894 3 1010 604 108 69 0 chr1 55778892 55778994 -141416438 - BC1_Mm scRNA scRNA -42 110 2 3 1010 226 239 0 21 chr1 55778955 55779002 -141416430 - ZP3AR Satellite Satellite -130 82 37 3 1010 6107 85 15 3 chr1 55779026 55780598 -141414834 - L1VL2 LINE L1 -1850 1765 172 3 1010 249 159 0 0 chr1 55781361 55781405 -141414027 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1010 1133 170 141 43 chr1 55781497 55781799 -141413633 - MT2A LTR ERVL -140 461 1 3 1010 182 342 107 27 chr1 55781949 55782099 -141413333 - MIR SINE MIR -76 186 25 3 1010 217 312 93 103 chr1 55782730 55782837 -141412595 - PB1D7 SINE Alu -3 117 12 3 1010 381 289 39 40 chr1 55782960 55783100 -141412332 - B4 SINE B4 -91 133 1 3 1010 239 230 0 11 chr1 55784630 55784718 -141410714 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1010 191 36 36 0 chr1 55784782 55784810 -141410622 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 3 1010 1041 59 0 15 chr1 55784810 55784947 -141410485 - B1_Mus1 SINE Alu 0 148 14 3 1010 450 312 21 21 chr1 55785509 55785638 -141409794 + B1F SINE Alu 5 136 -13 3 1010 225 0 0 0 chr1 55785638 55785663 -141409769 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1010 450 312 21 21 chr1 55785663 55785677 -141409755 + B1F SINE Alu 137 147 -2 3 1010 309 26 0 0 chr1 55786881 55786919 -141408513 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1010 477 80 0 0 chr1 55786919 55786994 -141408438 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1010 1030 218 72 61 chr1 55787160 55787438 -141407994 + ORR1E LTR MaLR 68 348 -11 3 1010 741 268 76 85 chr1 55787977 55788382 -141407050 - RLTR11B LTR ERVK -27 414 1 3 1010 310 291 12 0 chr1 55791199 55791285 -141404147 + MLT1B LTR MaLR 25 111 -279 3 1010 372 43 0 0 chr1 55791465 55791511 -141403921 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1010 277 279 77 52 chr1 55791512 55791667 -141403765 - MER3 DNA MER1_type -5 204 46 3 1010 222 37 0 0 chr1 55792068 55792095 -141403337 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1010 321 185 0 0 chr1 55793036 55793101 -141402331 + (CGTG)n Simple_repeat Simple_repeat 3 67 0 4 1010 215 333 172 15 chr1 55793781 55794171 -141401261 + L2 LINE L2 1835 2285 -1134 4 1010 591 200 7 7 chr1 55794175 55794453 -141400979 + CT-rich Low_complexity Low_complexity 1 278 0 4 1010 276 164 0 0 chr1 55794475 55794542 -141400890 + CT-rich Low_complexity Low_complexity 2 68 0 4 1010 571 213 240 0 chr1 55795177 55795327 -141400105 + B4A SINE B4 2 187 -105 4 1010 354 45 0 0 chr1 55795343 55795387 -141400045 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1010 3904 261 79 30 chr1 55796361 55797678 -141397754 - Lx9 LINE L1 -1 7643 6262 4 1010 24 0 0 0 chr1 55799663 55799687 -141395745 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 1696 167 77 26 chr1 55800202 55800553 -141394879 - RLTR20A LTR ERVK -172 369 1 4 1010 1094 237 41 80 chr1 55801162 55801574 -141393858 - RLTR31_Mur LTR ERVK -147 406 11 4 1010 3585 274 84 38 chr1 55801737 55802673 -141392759 - Lx8 LINE L1 -121 7352 6367 4 1010 1857 210 28 8 chr1 55802673 55803033 -141392399 - ORR1B2 LTR MaLR 0 367 1 4 1010 3585 274 84 38 chr1 55803033 55803329 -141392103 - Lx8 LINE L1 -1107 6366 6063 4 1010 364 278 150 18 chr1 55806309 55806529 -141388903 + MIR SINE MIR 13 261 -1 4 1010 567 144 0 0 chr1 55808548 55808645 -141386787 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1010 306 0 0 0 chr1 55808645 55808679 -141386753 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1010 25 31 0 0 chr1 55809022 55809054 -141386378 + AT_rich Low_complexity Low_complexity 1 32 0 4 1010 26 50 0 0 chr1 55810612 55810652 -141384780 + AT_rich Low_complexity Low_complexity 1 40 0 4 1010 297 0 0 0 chr1 55811159 55811192 -141384240 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1010 272 248 120 32 chr1 55811518 55811643 -141383789 + L1M4 LINE L1 5663 5798 -386 4 1010 21 57 0 0 chr1 55811649 55811684 -141383748 + AT_rich Low_complexity Low_complexity 1 35 0 4 1010 628 111 74 0 chr1 55811772 55811880 -141383552 + L1_Mur2 LINE L1 151 266 -6446 4 1010 3072 116 70 4 chr1 55811875 55812350 -141383082 + Lx4A LINE L1 6499 7004 -54 4 1010 21 0 0 0 chr1 55812350 55812371 -141383061 + AT_rich Low_complexity Low_complexity 1 21 0 4 1010 589 233 305 7 chr1 55813369 55813641 -141381791 - Lx9 LINE L1 -8 7636 7284 4 1010 2681 198 129 47 chr1 55813648 55814436 -141380996 - Lx9 LINE L1 -654 6990 6138 4 1010 243 260 39 0 chr1 55814539 55814616 -141380816 + L1M5 LINE L1 2860 2939 -3207 4 1010 403 306 106 26 chr1 55814655 55815004 -141380428 + L1M5 LINE L1 3071 3447 -2699 4 1010 4249 169 82 4 chr1 55815890 55816682 -141378750 - Lx4B LINE L1 -54 7004 6151 4 1010 1742 119 0 0 chr1 55816774 55817018 -141378414 + ORR1A3 LTR MaLR 75 318 -8 4 1010 1424 261 91 8 chr1 55817022 55817231 -141378201 - Lx9 LINE L1 -629 7015 6806 4 1010 396 0 0 0 chr1 55817231 55817275 -141378157 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1010 1424 261 91 8 chr1 55817275 55817459 -141377973 - Lx9 LINE L1 -839 6805 6590 4 1010 648 275 31 21 chr1 55817478 55817671 -141377761 - Lx9 LINE L1 -1115 6529 6335 4 1010 216 158 0 0 chr1 55817682 55817720 -141377712 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1010 1145 240 115 82 chr1 55817745 55818160 -141377272 + Lx9 LINE L1 7095 7530 -114 4 1010 222 37 0 0 chr1 55818160 55818187 -141377245 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1010 1145 240 115 82 chr1 55818187 55818284 -141377148 + Lx9 LINE L1 7531 7624 -20 4 1010 484 301 188 17 chr1 55819890 55820066 -141375366 + ID_B1 SINE B4 19 224 0 4 1010 295 397 56 35 chr1 55821458 55821690 -141373742 + L2b LINE L2 3123 3359 -16 4 1010 600 292 54 18 chr1 55821890 55822113 -141373319 + MTE-int LTR MaLR 1311 1541 -39 4 1010 1183 68 0 51 chr1 55823310 55823466 -141371966 + B1_Mus1 SINE Alu 1 148 0 4 1010 938 281 69 7 chr1 55823539 55823855 -141371577 + L1MB7 LINE L1 5282 5631 -558 4 1010 4680 163 71 39 chr1 55823855 55824729 -141370703 - RMER19B LTR ERVK 0 902 1 4 1010 938 281 52 3 chr1 55824729 55824832 -141370600 + L1MB7 LINE L1 5631 5741 -437 4 1010 530 325 94 42 chr1 55824855 55825254 -141370178 + MLT2B4 LTR ERVL 35 527 -40 4 1010 676 288 88 44 chr1 55825438 55825780 -141369652 + L1MB7 LINE L1 5734 6090 -94 4 1010 1492 223 114 0 chr1 55826546 55826922 -141368510 - MTD LTR MaLR 0 419 1 4 1010 2290 113 0 0 chr1 55827339 55827658 -141367774 - ORR1A3 LTR MaLR 0 326 8 4 1010 6632 160 200 49 chr1 55827671 55827844 -141367588 - ORR1A3-int LTR MaLR -7 1956 1844 4 1010 1202 75 7 0 chr1 55827844 55827991 -141367441 - B1_Mus1 SINE Alu 0 148 1 4 1010 6632 160 200 49 chr1 55827991 55829292 -141366140 - ORR1A3-int LTR MaLR -120 1843 238 4 1010 437 32 32 0 chr1 55829292 55829354 -141366078 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1010 6632 160 200 49 chr1 55829354 55829484 -141365948 - ORR1A3-int LTR MaLR -1726 237 108 4 1010 4896 43 0 0 chr1 55829493 55830046 -141365386 + L1Md_T LINE L1 6030 6582 0 4 1010 28769 9 0 4 chr1 55830060 55835205 -141360227 + L1Md_A LINE L1 433 5534 -349 4 1010 3364 19 0 8 chr1 55835205 55835575 -141359857 + IAPLTR1_Mm LTR ERVK 1 367 0 4 126 26679 21 35 1 chr1 55835575 55838630 -141356802 + IAPEz-int LTR ERVK 8 3165 -3316 4 1011 10081 23 3 1 chr1 55838619 55839754 -141355678 + IAPEz-int LTR ERVK 5345 6481 0 4 1011 3364 19 0 8 chr1 55839754 55840124 -141355308 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1011 539 0 0 0 chr1 55840124 55840182 -141355250 + L1_Mm LINE L1 5529 5586 -297 4 1011 9498 10 0 0 chr1 55840182 55841178 -141354254 + L1Md_A LINE L1 5587 6582 0 4 1011 739 93 0 0 chr1 55841181 55841289 -141354143 - ORR1A3-int LTR MaLR -1855 108 1 4 1011 2145 123 87 0 chr1 55841289 55841589 -141353843 - ORR1A3 LTR MaLR 0 326 1 4 1011 432 0 0 0 chr1 55842457 55842505 -141352927 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1011 387 0 0 0 chr1 55842505 55842547 -141352885 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1011 260 211 40 0 chr1 55843134 55843210 -141352222 - MADE2 DNA Mariner -1 79 1 4 1011 1476 150 14 0 chr1 55843692 55843912 -141351520 + URR1B DNA MER1_type 1 223 -2 4 1011 1281 269 71 71 chr1 55845282 55845762 -141349670 - RMER13A LTR ERVK -367 493 14 4 1011 277 275 130 0 chr1 55847432 55847563 -141347869 + L1MC4 LINE L1 6556 6703 -1339 4 1011 360 284 48 61 chr1 55848280 55848445 -141346987 - Lx8 LINE L1 -1487 5986 5824 4 1011 265 170 36 36 chr1 55848472 55848527 -141346905 + B4 SINE B4 6 60 -232 4 1011 381 70 0 0 chr1 55848530 55848587 -141346845 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1011 868 275 64 41 chr1 55848594 55848860 -141346572 - B4A SINE B4 -20 272 1 4 1011 381 22 0 0 chr1 55849223 55849269 -141346163 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1011 1332 63 0 0 chr1 55850079 55850254 -141345178 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 4 1011 376 141 23 34 chr1 55850255 55850296 -141345136 + polypyrimidine Low_complexity Low_complexity 49 89 0 4 1011 252 0 0 0 chr1 55850296 55850324 -141345108 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 4 1011 376 141 23 34 chr1 55850324 55850370 -141345062 + polypyrimidine Low_complexity Low_complexity 3 48 0 4 1011 1267 72 0 11 chr1 55850372 55850554 -141344878 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1011 1044 171 192 6 chr1 55850741 55850923 -141344509 - B3 SINE B2 0 216 1 4 1011 357 283 129 17 chr1 55851873 55852181 -141343251 - L1MD3 LINE L1 -445 5999 5657 4 1011 321 367 0 8 chr1 55852251 55852372 -141343060 - Lx8 LINE L1 -283 7190 7071 4 1011 723 280 16 5 chr1 55852600 55852787 -141342645 - RMER15-int LTR ERVL -262 4737 4549 4 1011 1842 133 60 0 chr1 55852787 55853088 -141342344 + ORR1A2 LTR MaLR 1 319 -8 4 1011 652 304 9 5 chr1 55853092 55853310 -141342122 - Lx8 LINE L1 -847 6626 6408 4 1011 557 269 163 47 chr1 55853568 55853954 -141341478 - L1MD3 LINE L1 -1826 4320 3890 4 1011 215 31 31 0 chr1 55853964 55853996 -141341436 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1011 714 340 25 58 chr1 55853999 55854277 -141341155 - B4A SINE B4 -18 274 6 4 1011 296 279 101 7 chr1 55854305 55854453 -141340979 - L1MEc LINE L1 -2272 4047 3886 4 1011 383 0 21 0 chr1 55854462 55854509 -141340923 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1011 627 292 22 51 chr1 55854927 55855275 -141340157 - L1MB1 LINE L1 -311 5878 5542 4 1011 264 272 156 55 chr1 55855611 55855720 -141339712 - PB1D7 SINE Alu 0 120 1 4 1011 340 304 29 0 chr1 55855765 55855903 -141339529 - L1MEc LINE L1 -5548 852 711 4 1011 343 342 179 32 chr1 55856204 55856545 -141338887 - L1MEc LINE L1 -5966 434 44 4 1011 1075 284 98 8 chr1 55857299 55857657 -141337775 - MLT1B LTR MaLR 0 390 1 4 1011 1101 88 0 0 chr1 55858287 55858423 -141337009 + B1_Mus1 SINE Alu 1 136 -12 4 1011 243 0 0 0 chr1 55858426 55858453 -141336979 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1011 414 0 0 0 chr1 55859422 55859468 -141335964 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1011 582 291 50 11 chr1 55860486 55860667 -141334765 + MER31B LTR ERV1 1 188 -278 4 1011 314 310 26 26 chr1 55860787 55860903 -141334529 - MLT1G LTR MaLR -262 329 214 4 1011 2188 229 31 5 chr1 55861346 55861812 -141333620 - Lx6 LINE L1 -156 7540 6804 4 1011 236 267 0 0 chr1 55861838 55861898 -141333534 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 4 1011 316 318 23 0 chr1 55861951 55862039 -141333393 + Lx7 LINE L1 7209 7298 -398 4 1011 414 100 0 0 chr1 55862048 55862108 -141333324 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1011 227 243 118 27 chr1 55862240 55862350 -141333082 + Lx8 LINE L1 7353 7472 -1 4 1011 542 364 20 0 chr1 55862390 55862588 -141332844 - RMER15-int LTR ERVL -4773 226 25 4 1011 1216 269 40 12 chr1 55862600 55863025 -141332407 + L1M2 LINE L1 5343 5779 -533 4 1011 910 299 60 4 chr1 55863026 55863291 -141332141 + B4A SINE B4 1 280 -12 4 1011 835 162 15 0 chr1 55865270 55865406 -141330026 - B1_Mur4 SINE Alu -7 143 6 4 1011 322 282 0 106 chr1 55865298 55865421 -141330011 - MT2B LTR ERVL -337 264 155 4 1011 5376 67 5 0 chr1 55867679 55868334 -141327098 + L1_Mus1 LINE L1 5910 6567 0 4 1011 25 0 0 0 chr1 55868677 55868702 -141326730 + AT_rich Low_complexity Low_complexity 1 25 0 4 1011 22 35 0 0 chr1 55868774 55868803 -141326629 + AT_rich Low_complexity Low_complexity 1 29 0 4 1011 4354 60 0 0 chr1 55868878 55869381 -141326051 - L1_Mus1 LINE L1 0 6567 6065 4 1011 1243 115 11 37 chr1 55869660 55869849 -141325583 - B2_Mm2 SINE B2 -10 185 2 4 1011 552 365 102 69 chr1 55870132 55870624 -141324808 + LTR40a LTR ERVL 11 518 -1 4 1011 703 308 98 73 chr1 55870693 55871183 -141324249 - MLT2B1 LTR ERVL -6 514 13 4 1011 1403 289 58 37 chr1 55871412 55872062 -141323370 - L1MD1 LINE L1 -4 6238 5575 4 1011 253 206 216 52 chr1 55872267 55872364 -141323068 + B1F SINE Alu 31 143 -6 4 1011 432 51 0 0 chr1 55872793 55872852 -141322580 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1011 324 0 0 0 chr1 55872853 55872889 -141322543 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1011 575 188 0 4 chr1 55872909 55873141 -141322291 + (CA)n Simple_repeat Simple_repeat 1 231 0 5 1011 494 280 145 9 chr1 55874019 55874246 -141321186 + L1MA4 LINE L1 5665 5922 -378 5 1011 423 0 0 0 chr1 55875363 55875410 -141320022 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1011 228 200 222 28 chr1 55875410 55875482 -141319950 - B3 SINE B2 -70 146 61 5 1011 381 302 137 18 chr1 55876642 55876861 -141318571 - L1M5 LINE L1 -400 5794 5550 5 1011 23 33 0 0 chr1 55876861 55876891 -141318541 + AT_rich Low_complexity Low_complexity 1 30 0 5 1011 402 21 0 0 chr1 55877069 55877116 -141318316 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1011 517 232 106 20 chr1 55877118 55877316 -141318116 + L1MB2 LINE L1 5953 6167 -4 5 1011 231 36 0 0 chr1 55877320 55877348 -141318084 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1011 273 296 0 12 chr1 55878235 55878317 -141317115 - L3b LINE CR1 -387 95 15 5 1011 258 376 146 6 chr1 55878602 55878643 -141316789 - B4A SINE B4 -17 275 125 5 1011 520 263 0 50 chr1 55878643 55878763 -141316669 - PB1D9 SINE Alu 0 120 7 5 1011 637 367 54 3 chr1 55879965 55880282 -141315150 - MLT1A0 LTR MaLR 0 365 33 5 1011 722 143 8 0 chr1 55880764 55880897 -141314535 + CT-rich Low_complexity Low_complexity 3 136 0 5 1011 212 346 90 8 chr1 55881229 55881363 -141314069 + MER5B DNA MER1_type 4 148 -30 5 1011 619 297 39 39 chr1 55881597 55881800 -141313632 + B4A SINE B4 17 219 -73 5 1011 385 289 29 0 chr1 55881817 55881921 -141313511 + B1_Mur1 SINE Alu 41 147 -2 5 1011 333 0 0 0 chr1 55881967 55882004 -141313428 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1011 345 24 0 0 chr1 55882010 55882052 -141313380 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1011 459 100 0 0 chr1 55882143 55882213 -141313219 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1011 317 223 11 0 chr1 55882297 55882391 -141313041 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 1011 225 94 0 0 chr1 55884603 55884635 -141310797 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1011 1431 50 0 0 chr1 55884637 55884817 -141310615 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1011 180 0 0 0 chr1 55886914 55886934 -141308498 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 5 1011 252 264 0 0 chr1 55887809 55887862 -141307570 + L2c LINE L2 3020 3072 -315 5 1011 9199 156 8 101 chr1 55887867 55889421 -141306011 - L1_Mur2 LINE L1 -344 5539 4164 5 1011 3000 105 45 2 chr1 55889421 55889840 -141305592 - RLTR9B LTR ERVK 0 437 1 5 1011 9199 156 8 101 chr1 55889840 55890253 -141305179 - L1_Mur2 LINE L1 -1714 4163 3748 5 1011 8916 129 18 4 chr1 55890250 55891705 -141303727 + Lx3C LINE L1 5470 6941 -35 5 1011 41 21 0 0 chr1 55891714 55891762 -141303670 + AT_rich Low_complexity Low_complexity 1 48 0 5 1011 195 42 0 0 chr1 55892405 55892429 -141303003 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1011 226 293 130 10 chr1 55892942 55893042 -141302390 - MIR SINE MIR -117 145 34 5 1011 376 134 104 0 chr1 55893667 55893729 -141301703 - URR1B DNA MER1_type 0 225 157 5 1011 2299 187 48 30 chr1 55893729 55894225 -141301207 + RLTR16 LTR ERVK 1 505 0 5 1011 884 200 0 0 chr1 55894225 55894387 -141301045 - URR1B DNA MER1_type -63 162 1 5 1011 216 182 0 0 chr1 55895369 55895413 -141300019 + (CTTA)n Simple_repeat Simple_repeat 3 46 0 5 1011 8249 151 51 3 chr1 55896616 55896902 -141298530 + Lx2B LINE L1 4345 4629 -1248 5 1011 195 42 0 0 chr1 55896902 55896926 -141298506 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1011 8736 143 34 15 chr1 55896926 55899220 -141296212 + Lx2B LINE L1 4630 6996 -4 5 1011 1027 68 13 7 chr1 55899220 55899369 -141296063 + (GAAA)n Simple_repeat Simple_repeat 2 151 0 5 1011 311 112 98 7 chr1 55900079 55900232 -141295200 + (CAGAG)n Simple_repeat Simple_repeat 4 170 0 5 1011 18735 109 3 10 chr1 55900242 55900367 -141295065 - L1VL4 LINE L1 -1835 4048 3935 5 1011 2280 49 3 7 chr1 55900367 55900657 -141294775 - L1Md_F2 LINE L1 0 6582 6294 5 1011 18735 139 8 55 chr1 55900657 55904372 -141291060 - L1VL4 LINE L1 -1949 3934 406 5 1011 222 164 0 0 chr1 55904477 55904532 -141290900 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1011 307 306 10 10 chr1 55905957 55906042 -141289390 + L1MC5 LINE L1 6993 7078 -883 5 1011 306 0 0 0 chr1 55906042 55906076 -141289356 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1011 307 306 10 10 chr1 55906076 55906089 -141289343 + L1MC5 LINE L1 7079 7091 -870 5 1011 226 222 0 0 chr1 55906298 55906343 -141289089 + CT-rich Low_complexity Low_complexity 3 47 0 5 1011 215 228 0 0 chr1 55906615 55906672 -141288760 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1011 317 258 11 21 chr1 55907813 55907908 -141287524 + MLT1A1 LTR MaLR 41 134 -274 5 1011 1503 171 120 21 chr1 55908069 55908403 -141287029 - ORR1B2 LTR MaLR 0 367 1 5 1011 2327 145 102 8 chr1 55909226 55909598 -141285834 - RMER20A LTR ERVK 0 516 130 5 1011 1005 77 77 0 chr1 55909598 55909753 -141285679 + L1Md_F2 LINE L1 6416 6582 0 5 1011 2327 145 102 8 chr1 55909753 55909852 -141285580 - RMER20A LTR ERVK -387 129 3 5 1011 1183 270 68 112 chr1 55909868 55910104 -141285328 + ORR1C1-int LTR MaLR 965 1155 -425 5 1011 1055 139 0 6 chr1 55910104 55910285 -141285147 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1011 1830 135 92 16 chr1 55910285 55910637 -141284795 + ORR1C1-int LTR MaLR 1127 1509 0 5 1011 1323 187 173 24 chr1 55910637 55910906 -141284526 + ORR1C1 LTR MaLR 1 295 -83 5 1011 369 0 0 0 chr1 55910906 55910947 -141284485 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1011 1323 187 173 24 chr1 55910947 55911006 -141284426 + ORR1C1 LTR MaLR 296 377 -1 5 1011 289 173 11 110 chr1 55911243 55911334 -141284098 - ORR1C1 LTR MaLR -191 187 106 5 1011 2187 185 27 77 chr1 55912962 55913518 -141281914 - RLTR11A LTR ERVK 0 528 1 5 1011 3708 151 29 51 chr1 55914068 55914585 -141280847 - RMER17D2 LTR ERVK 0 809 311 5 1011 674 39 9 29 chr1 55914585 55914690 -141280742 + (GGAGA)n Simple_repeat Simple_repeat 2 104 0 5 1011 3708 151 29 51 chr1 55914690 55914998 -141280434 - RMER17D2 LTR ERVK -499 310 3 5 1011 245 260 117 52 chr1 55915004 55915158 -141280274 - L1M5 LINE L1 -384 5856 5693 5 1011 995 190 37 32 chr1 55915185 55915403 -141280029 + URR1B DNA MER1_type 7 225 0 5 1011 287 202 11 0 chr1 55915544 55915638 -141279794 + CT-rich Low_complexity Low_complexity 2 96 0 5 1011 213 317 0 0 chr1 55915688 55915748 -141279684 + L2 LINE L2 1967 2026 -1393 5 1011 286 259 0 66 chr1 55916335 55916426 -141279006 + C-rich Low_complexity Low_complexity 6 90 0 5 1011 705 280 144 0 chr1 55916508 55916758 -141278674 - B4A SINE B4 -2 290 5 5 1011 321 228 0 0 chr1 55917334 55917413 -141278019 + GA-rich Low_complexity Low_complexity 2 80 0 5 1011 240 35 0 0 chr1 55917465 55917494 -141277938 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1011 4960 38 1 0 chr1 55918399 55919060 -141276372 - L1Md_F3 LINE L1 -414 6168 5507 5 1011 3296 40 15 19 chr1 55919060 55919471 -141275961 + L1Md_F3 LINE L1 6175 6583 -1 5 1011 1920 202 17 17 chr1 55920836 55921248 -141274184 - RMER5 LTR ERV1 -119 415 4 5 1011 25 0 0 0 chr1 55921255 55921280 -141274152 + AT_rich Low_complexity Low_complexity 1 25 0 5 1011 247 297 97 18 chr1 55922338 55922451 -141272981 - L1ME3B LINE L1 -190 6050 5929 5 1011 219 320 96 24 chr1 55922467 55922592 -141272840 + B1F SINE Alu 1 134 -15 5 1011 396 0 0 0 chr1 55923137 55923181 -141272251 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 5 1011 242 308 13 13 chr1 55923184 55923263 -141272169 - Tigger5 DNA MER2_type -9 2397 2319 5 1011 212 298 35 0 chr1 55924187 55924244 -141271188 - RSINE1 SINE B4 -100 65 7 5 1011 218 284 15 0 chr1 55925747 55925814 -141269618 + CT-rich Low_complexity Low_complexity 2 69 0 5 1011 383 294 36 67 chr1 55927628 55927840 -141267592 - MTE2b LTR MaLR -162 217 16 5 1011 487 274 169 72 chr1 55928134 55928413 -141267019 - MTEa LTR MaLR -70 309 4 5 1011 600 134 0 0 chr1 55929402 55929499 -141265933 + (TA)n Simple_repeat Simple_repeat 1 97 0 5 1011 405 0 0 0 chr1 55929571 55929616 -141265816 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1011 252 86 0 0 chr1 55929767 55929802 -141265630 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1011 4862 51 2 5 chr1 55929842 55930435 -141264997 - L1Md_F2 LINE L1 -12 6570 5980 5 1011 333 109 0 0 chr1 55932808 55932863 -141262569 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1011 234 0 0 0 chr1 55933155 55933181 -141262251 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1011 516 304 33 43 chr1 55933465 55933496 -141261936 - B3 SINE B2 -5 211 181 5 1011 279 79 0 0 chr1 55933496 55933534 -141261898 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1011 569 263 32 22 chr1 55933534 55933712 -141261720 - B3A SINE B2 -36 180 4 5 1011 552 30 0 0 chr1 55934488 55934554 -141260878 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1011 554 301 108 52 chr1 55934618 55934867 -141260565 - B4A SINE B4 -24 268 6 5 1011 655 283 97 11 chr1 55935350 55935618 -141259814 + MER121 Unknown Unknown 114 404 -8 5 1011 183 204 0 0 chr1 55936314 55936358 -141259074 + (CAT)n Simple_repeat Simple_repeat 1 44 0 5 1011 640 256 54 21 chr1 55937027 55937266 -141258166 + L1MA5 LINE L1 4574 4820 -1323 5 1011 222 37 0 0 chr1 55937390 55937417 -141258015 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1011 1747 259 63 51 chr1 55937429 55937862 -141257570 + L1MA5 LINE L1 5147 5594 -706 5 1011 182 37 0 36 chr1 55937862 55937890 -141257542 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1011 1747 284 69 56 chr1 55937890 55938432 -141257000 + L1MA5 LINE L1 5595 6150 -150 5 1011 198 167 0 0 chr1 55939262 55939298 -141256134 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1011 1033 251 63 87 chr1 55939301 55939681 -141255751 + MTEa LTR MaLR 1 371 -8 5 1011 1112 229 50 98 chr1 55939694 55940091 -141255341 + MTE2a LTR MaLR 1 378 -1 5 1011 207 114 0 0 chr1 55940115 55940150 -141255282 + (CATG)n Simple_repeat Simple_repeat 1 35 0 5 1011 225 357 10 0 chr1 55940237 55940335 -141255097 - PB1D10 SINE Alu -11 106 8 5 1011 402 312 80 10 chr1 55940399 55940600 -141254832 - MLT2D LTR ERVL -185 229 15 5 1011 537 16 0 0 chr1 55940766 55940828 -141254604 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1011 192 263 0 0 chr1 55940893 55940969 -141254463 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1011 236 265 0 10 chr1 55941016 55941115 -141254317 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1011 257 257 80 67 chr1 55941241 55941391 -141254041 - B4A SINE B4 -138 154 3 5 1011 468 0 0 0 chr1 55941864 55941916 -141253516 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1011 180 135 0 0 chr1 55943962 55943999 -141251433 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1011 642 293 96 11 chr1 55943999 55944354 -141251078 - MLT1B LTR MaLR -4 386 2 6 1011 411 299 85 6 chr1 55945617 55945782 -141249650 - MIRb SINE MIR 0 268 91 6 1011 653 211 36 88 chr1 55946066 55946258 -141249174 - B3A SINE B2 -16 182 1 6 1011 22 0 0 0 chr1 55946811 55946833 -141248599 + AT_rich Low_complexity Low_complexity 1 22 0 6 1011 594 0 0 0 chr1 55949396 55949462 -141245970 + (TTC)n Simple_repeat Simple_repeat 1 66 0 6 1011 216 0 0 0 chr1 55949903 55949927 -141245505 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1011 726 12 0 0 chr1 55949927 55950010 -141245422 + (GGGAGA)n Simple_repeat Simple_repeat 6 88 0 6 1011 24 0 0 0 chr1 55955253 55955277 -141240155 + AT_rich Low_complexity Low_complexity 1 24 0 6 1011 254 87 0 21 chr1 55955963 55956010 -141239422 + (CAAAAA)n Simple_repeat Simple_repeat 5 50 0 6 1011 192 40 0 0 chr1 55956147 55956172 -141239260 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 6 1011 374 57 19 0 chr1 55956186 55956239 -141239193 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1011 1192 232 56 29 chr1 55957456 55957834 -141237598 - LTR37A LTR ERV1 -1 425 38 6 1011 2159 220 56 12 chr1 55958090 55958666 -141236766 + Lx9 LINE L1 6914 7514 -130 6 1011 273 214 12 23 chr1 55958666 55958752 -141236680 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1011 495 170 45 39 chr1 55958756 55958801 -141236631 + Lx9 LINE L1 7462 7503 -141 6 1011 207 0 0 0 chr1 55958801 55958824 -141236608 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1011 495 170 45 39 chr1 55958824 55958956 -141236476 + Lx9 LINE L1 7504 7639 -5 6 1011 695 262 63 15 chr1 55959103 55959308 -141236124 + B3 SINE B2 1 215 -1 6 1011 1100 92 0 0 chr1 55959727 55959868 -141235564 + B1_Mus1 SINE Alu 1 141 -7 6 1011 198 0 0 0 chr1 55959870 55959892 -141235540 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1011 357 24 0 0 chr1 55961022 55961064 -141234368 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1011 780 300 60 20 chr1 55961107 55961359 -141234073 - B4A SINE B4 -16 276 15 6 1011 262 273 97 35 chr1 55961617 55961761 -141233671 + RSINE1 SINE B4 3 155 -10 6 1011 580 309 34 34 chr1 55962207 55962415 -141233017 - B3A SINE B2 0 216 9 6 1011 245 373 59 13 chr1 55963841 55963993 -141231439 + MLT1J2 LTR MaLR 263 421 -27 6 1011 219 315 62 53 chr1 55964270 55964478 -141230954 + MIR SINE MIR 50 259 -3 6 1011 364 327 161 44 chr1 55964575 55965050 -141230382 - MLT1E1A LTR MaLR -9 671 46 6 1011 1178 265 88 15 chr1 55965160 55965489 -141229943 - ORR1D2 LTR MaLR -13 357 5 6 1011 21 0 0 0 chr1 55965554 55965575 -141229857 + AT_rich Low_complexity Low_complexity 1 21 0 6 1011 239 313 70 10 chr1 55965989 55966089 -141229343 - MIR SINE MIR -114 148 43 6 1011 352 246 14 0 chr1 55966091 55966160 -141229272 - ID4_ SINE ID -11 72 3 6 1011 338 333 71 14 chr1 55966174 55966314 -141229118 - B1F SINE Alu -1 148 1 6 1012 301 330 64 0 chr1 55968396 55968505 -141226927 - L2b LINE L2 -2 3373 3258 6 1012 25 0 0 0 chr1 55969056 55969081 -141226351 + AT_rich Low_complexity Low_complexity 1 25 0 6 1012 230 243 77 51 chr1 55969496 55969574 -141225858 + ID2 SINE ID 2 81 -2 6 1012 213 65 0 0 chr1 55969680 55969711 -141225721 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1012 441 185 21 52 chr1 55970429 55970526 -141224906 - B3A SINE B2 -104 94 1 6 1012 297 0 0 0 chr1 55972689 55972722 -141222710 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1012 369 0 0 0 chr1 55973706 55973747 -141221685 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1012 270 0 0 0 chr1 55973747 55973776 -141221656 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1012 180 211 207 17 chr1 55974976 55975034 -141220398 - L2a LINE L2 -2 3424 3356 6 1012 575 62 12 0 chr1 55975455 55975535 -141219897 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 6 1012 352 221 18 0 chr1 55975683 55975796 -141219636 + (TA)n Simple_repeat Simple_repeat 2 116 0 6 1012 668 197 14 7 chr1 55975842 55975980 -141219452 - B1F SINE Alu -8 141 3 6 1012 23 0 0 0 chr1 55977552 55977575 -141217857 + AT_rich Low_complexity Low_complexity 1 23 0 6 1012 348 24 0 0 chr1 55977824 55977865 -141217567 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1012 197 259 0 67 chr1 55979679 55979828 -141215604 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 6 1012 377 266 7 0 chr1 55979795 55979949 -141215483 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 1012 253 241 156 60 chr1 55980267 55980466 -141214966 - RLTR21 LTR ERVK -265 1307 1090 6 1012 4430 12 2 0 chr1 55980473 55980965 -141214467 + MT2_Mm LTR ERVL 1 493 0 6 1012 45096 17 6 0 chr1 55980965 55986291 -141209141 + MERVL-int LTR ERVL 1 5360 -125 6 1012 390 167 46 35 chr1 55986291 55986378 -141209054 + ORR1A3-int LTR MaLR 553 640 -1323 6 1012 302 0 0 0 chr1 55986378 55986416 -141209016 + MERVL-int LTR ERVL 5448 5485 0 6 1012 4414 14 2 0 chr1 55986416 55986908 -141208524 + MT2_Mm LTR ERVL 1 493 0 6 1012 22 56 0 0 chr1 55986988 55987024 -141208408 + AT_rich Low_complexity Low_complexity 1 36 0 6 1012 958 128 28 0 chr1 55988431 55988572 -141206860 - B1_Mus2 SINE Alu -2 145 1 6 1012 396 0 0 0 chr1 55988742 55988786 -141206646 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1012 6500 166 57 21 chr1 55988824 55990083 -141205349 - Lx5 LINE L1 0 7050 5747 6 1012 610 370 38 52 chr1 55990162 55990453 -141204979 + B4A SINE B4 6 292 0 6 1012 2063 148 17 97 chr1 55990931 55991344 -141204088 + ORR1B1 LTR MaLR 7 386 -8 6 1012 782 330 49 10 chr1 55991852 55992140 -141203292 - MER2 DNA MER2_type -3 342 44 6 1012 216 0 0 0 chr1 55993090 55993114 -141202318 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1012 35 0 0 0 chr1 55993233 55993268 -141202164 + AT_rich Low_complexity Low_complexity 1 35 0 6 1012 831 112 0 0 chr1 55993283 55993408 -141202024 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 6 1012 1093 115 0 0 chr1 55993425 55993573 -141201859 - B1_Mus1 SINE Alu 0 148 1 6 1012 256 161 16 16 chr1 55994114 55994177 -141201255 + T-rich Low_complexity Low_complexity 5 67 0 6 1012 357 24 0 0 chr1 55994498 55994540 -141200892 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1012 21 36 0 0 chr1 55995559 55995587 -141199845 + AT_rich Low_complexity Low_complexity 1 28 0 6 1012 461 265 43 16 chr1 55996973 55997161 -141198271 - Lx6 LINE L1 -11 7449 7257 6 1012 320 361 130 5 chr1 55998841 55999033 -141196399 - MER20 DNA MER1_type -3 216 1 6 1012 1602 76 4 8 chr1 55999722 55999961 -141195471 - L1Md_F2 LINE L1 -1 6581 6344 6 1012 553 337 58 16 chr1 56000722 56000912 -141194520 + LFSINE_Vert SINE SINE 65 262 -197 1 1012 285 98 0 0 chr1 56001341 56001382 -141194050 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2 1012 32 26 0 0 chr1 56002216 56002255 -141193177 + AT_rich Low_complexity Low_complexity 1 39 0 3 1012 21 36 0 0 chr1 56003502 56003530 -141191902 + AT_rich Low_complexity Low_complexity 1 28 0 4 1012 297 0 0 0 chr1 56004119 56004152 -141191280 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1012 339 44 0 0 chr1 56004156 56004201 -141191231 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1012 1207 68 0 0 chr1 56005850 56005998 -141189434 - B1_Mus1 SINE Alu 0 148 1 7 1012 1072 187 48 5 chr1 56007607 56007817 -141187615 + URR1B DNA MER1_type 1 219 -6 8 1012 487 223 9 26 chr1 56007839 56007954 -141187478 + RLTR16 LTR ERVK 35 147 -358 9 1012 1006 83 23 0 chr1 56008074 56008206 -141187226 + B1_Mus1 SINE Alu 2 136 -12 1 1012 237 65 0 0 chr1 56008207 56008238 -141187194 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1012 207 0 0 0 chr1 56008588 56008611 -141186821 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1012 1132 55 7 0 chr1 56008616 56008762 -141186670 - B1_Mm SINE Alu 0 147 1 1 1012 305 230 8 0 chr1 56009203 56009329 -141186103 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1012 180 0 0 0 chr1 56009372 56009392 -141186040 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1012 312 91 0 0 chr1 56009392 56009436 -141185996 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1012 239 104 21 0 chr1 56009478 56009526 -141185906 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1 1012 185 310 103 0 chr1 56009574 56009632 -141185800 - L2c LINE L2 -73 3314 3251 1 1012 753 177 14 0 chr1 56009643 56009790 -141185642 - B1_Mur4 SINE Alu 0 150 2 1 1012 1231 28 0 7 chr1 56011019 56011165 -141184267 - B1_Mus2 SINE Alu 0 147 3 2 1012 3456 25 2 0 chr1 56012138 56012533 -141182899 - MTA_Mm LTR MaLR 0 396 1 2 1012 189 0 0 0 chr1 56014057 56014078 -141181354 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 2 1012 267 79 0 0 chr1 56015457 56015495 -141179937 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1012 310 237 125 116 chr1 56015495 56015719 -141179713 - L1MCa LINE L1 -4549 1959 1734 2 1012 24 32 0 0 chr1 56015796 56015827 -141179605 + AT_rich Low_complexity Low_complexity 1 31 0 2 1012 21 36 0 0 chr1 56016131 56016159 -141179273 + AT_rich Low_complexity Low_complexity 1 28 0 2 1012 23 0 0 0 chr1 56016644 56016667 -141178765 + AT_rich Low_complexity Low_complexity 1 23 0 2 1012 26 0 0 0 chr1 56016781 56016807 -141178625 + AT_rich Low_complexity Low_complexity 1 26 0 2 1012 1547 218 37 37 chr1 56018347 56018724 -141176708 + RLTR17 LTR ERVK 1 377 -315 2 1012 339 25 0 0 chr1 56018736 56018776 -141176656 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1012 273 290 174 11 chr1 56019509 56019687 -141175745 - L2 LINE L2 -995 2424 2218 3 1012 196 191 31 16 chr1 56019879 56019943 -141175489 + GA-rich Low_complexity Low_complexity 4 68 0 3 1012 378 0 0 0 chr1 56023048 56023090 -141172342 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1012 926 58 0 0 chr1 56023543 56023663 -141171769 - B1_Mus1 SINE Alu 0 148 29 3 1012 342 260 54 63 chr1 56023586 56023697 -141171735 - RLTR25B LTR ERVK -519 509 400 3 1012 351 0 0 0 chr1 56026708 56026747 -141168685 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1012 363 44 0 0 chr1 56026747 56026791 -141168641 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1012 1568 92 229 8 chr1 56027456 56027709 -141167723 - RLTR27 LTR ERVK 0 309 1 3 1012 279 351 53 8 chr1 56029626 56029758 -141165674 + MIRb SINE MIR 109 246 -22 3 1012 401 277 7 68 chr1 56030133 56030280 -141165152 - RMER4A LTR ERVK -304 162 25 4 1012 6832 105 17 22 chr1 56032006 56033057 -141162375 + Lx3A LINE L1 5927 6972 -9 4 1012 372 43 0 0 chr1 56033061 56033107 -141162325 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 4 1012 411 258 70 39 chr1 56034811 56034940 -141160492 + LTR86C LTR ERVL 394 526 -95 4 1012 299 282 42 0 chr1 56034948 56035090 -141160342 + L1MA7 LINE L1 6138 6285 -6 4 1012 314 358 76 46 chr1 56035810 56036112 -141159320 + L2 LINE L2 2485 2795 -624 4 1012 25 0 0 0 chr1 56036388 56036413 -141159019 + AT_rich Low_complexity Low_complexity 1 25 0 4 1012 2517 123 72 5 chr1 56036414 56036846 -141158586 - Lx3A LINE L1 -7 6974 6514 4 1012 2826 134 20 24 chr1 56036846 56037357 -141158075 + Lx3A LINE L1 6015 6523 -458 4 1012 339 280 188 8 chr1 56037407 56037540 -141157892 - RSINE1 SINE B4 -6 159 3 4 1012 1023 115 0 0 chr1 56037952 56038109 -141157323 + (TTCC)n Simple_repeat Simple_repeat 3 159 0 4 1012 2639 123 71 25 chr1 56039189 56039638 -141155794 - RLTR18 LTR ERVK 0 616 147 5 1012 342 0 0 0 chr1 56040683 56040721 -141154711 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1012 412 301 88 16 chr1 56041762 56041914 -141153518 + B3A SINE B2 1 168 -48 5 1012 478 241 19 0 chr1 56042639 56042747 -141152685 - MLT1D LTR MaLR 0 505 396 5 1012 21 0 0 0 chr1 56044037 56044058 -141151374 + AT_rich Low_complexity Low_complexity 1 21 0 5 1012 275 325 0 0 chr1 56045409 56045507 -141149925 - MLT1F1 LTR MaLR -29 625 433 5 1012 668 270 46 105 chr1 56045545 56045851 -141149581 - B4 SINE B4 0 292 5 5 1012 399 307 117 67 chr1 56045874 56046155 -141149277 - MLT1F1 LTR MaLR -259 310 6 5 1012 435 296 127 0 chr1 56048502 56048762 -141146670 + L1MA6 LINE L1 5985 6277 -23 5 1012 1149 241 115 36 chr1 56050417 56050748 -141144684 - MTD LTR MaLR -58 361 5 5 1012 34 24 0 0 chr1 56051812 56051853 -141143579 + AT_rich Low_complexity Low_complexity 1 41 0 5 1012 339 25 0 0 chr1 56052592 56052632 -141142800 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1012 1347 256 65 27 chr1 56056182 56056687 -141138745 + Lx5 LINE L1 6515 7054 -4 6 1012 808 262 6 0 chr1 56056705 56056877 -141138555 + MTC LTR MaLR 197 369 -52 6 1012 34 55 0 0 chr1 56056878 56056933 -141138499 + AT_rich Low_complexity Low_complexity 1 55 0 6 1012 28 29 0 0 chr1 56056996 56057031 -141138401 + AT_rich Low_complexity Low_complexity 1 35 0 6 1012 238 324 86 51 chr1 56057338 56057595 -141137837 - Lx8 LINE L1 -7 7466 7201 6 1012 691 319 12 0 chr1 56057592 56057843 -141137589 - Lx8 LINE L1 -709 6764 6511 6 1012 414 282 53 14 chr1 56059187 56059349 -141136083 - B3 SINE B2 -26 172 1 6 1012 3033 67 15 0 chr1 56061395 56061798 -141133634 + L1Md_F2 LINE L1 6101 6509 -73 6 1012 411 73 0 0 chr1 56063147 56063202 -141132230 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 6 1012 557 346 47 18 chr1 56063559 56063836 -141131596 - B4A SINE B4 -6 286 2 6 1012 267 333 30 15 chr1 56064744 56064875 -141130557 + MIRc SINE MIR 108 240 -28 7 1012 1382 110 3 0 chr1 56065274 56065611 -141129821 + (CA)n Simple_repeat Simple_repeat 1 338 0 7 1012 1200 157 62 5 chr1 56065626 56065850 -141129582 - RLTR20B2 LTR ERVK -96 464 228 7 1012 1451 145 13 13 chr1 56065880 56066117 -141129315 + RLTR20B2 LTR ERVK 2 238 -322 7 1012 1028 183 13 64 chr1 56067299 56067533 -141127899 - URR1A DNA MER1_type -4 222 1 7 1012 863 52 44 25 chr1 56068723 56068882 -141126550 + (TTTCC)n Simple_repeat Simple_repeat 5 166 0 7 1012 363 141 0 0 chr1 56068884 56068948 -141126484 + (TCCC)n Simple_repeat Simple_repeat 3 66 0 7 1012 574 258 25 25 chr1 56069199 56069362 -141126070 + RSINE1 SINE B4 3 165 0 7 1012 1131 49 0 0 chr1 56069367 56069509 -141125923 + (TC)n Simple_repeat Simple_repeat 1 142 0 7 1012 237 65 0 0 chr1 56069509 56069539 -141125893 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1012 213 163 0 0 chr1 56069542 56069591 -141125841 + GA-rich Low_complexity Low_complexity 2 50 0 8 1012 186 43 0 0 chr1 56069602 56069625 -141125807 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1012 240 289 21 32 chr1 56069934 56070027 -141125405 + MTEb LTR MaLR 280 371 -8 8 1012 27 49 0 0 chr1 56070167 56070208 -141125224 + AT_rich Low_complexity Low_complexity 1 41 0 8 1012 277 271 7 7 chr1 56072152 56072297 -141123135 + (CA)n Simple_repeat Simple_repeat 2 146 0 8 1012 385 103 15 0 chr1 56073014 56073082 -141122350 + Lx2 LINE L1 6927 6995 -2 8 1012 24 0 0 0 chr1 56073364 56073388 -141122044 + AT_rich Low_complexity Low_complexity 1 24 0 8 1012 261 183 0 0 chr1 56075013 56075073 -141120359 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1012 570 333 3 61 chr1 56075073 56075383 -141120049 - B4A SINE B4 0 292 1 8 1012 522 166 131 30 chr1 56076135 56076303 -141119129 + Lx9 LINE L1 7404 7588 -56 8 1012 1074 158 108 51 chr1 56076303 56076517 -141118915 + URR1A DNA MER1_type 1 226 0 9 1012 286 161 0 0 chr1 56076517 56076573 -141118859 + Lx9 LINE L1 7581 7636 -8 8 1012 255 219 16 0 chr1 56077166 56077230 -141118202 + CT-rich Low_complexity Low_complexity 2 66 0 9 1012 261 266 11 0 chr1 56077199 56077329 -141118103 + (TCTCTG)n Simple_repeat Simple_repeat 1 131 0 9 1012 408 181 11 46 chr1 56077350 56077437 -141117995 - HAL1-3A_ME LINE L1 -803 2055 1972 9 1012 280 309 35 52 chr1 56077496 56077612 -141117820 + RMER12 LTR ERVK 737 850 -472 9 1012 252 295 9 35 chr1 56077612 56077728 -141117704 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 9 1012 304 418 9 78 chr1 56078536 56078754 -141116678 + MLT1J LTR MaLR 109 311 -201 9 1012 35 54 0 0 chr1 56079852 56079908 -141115524 + AT_rich Low_complexity Low_complexity 1 56 0 9 1012 21 36 0 0 chr1 56080008 56080036 -141115396 + AT_rich Low_complexity Low_complexity 1 28 0 9 1012 1063 281 38 94 chr1 56080219 56080612 -141114820 - MTE2a LTR MaLR -8 371 1 9 1012 444 261 67 72 chr1 56081080 56081289 -141114143 + MLT1A LTR MaLR 180 406 -2 1 1012 299 271 29 68 chr1 56082360 56082566 -141112866 + L1MA8 LINE L1 6060 6257 -34 1 1012 525 331 25 6 chr1 56082661 56082822 -141112610 - B4A SINE B4 -4 288 125 1 1012 210 276 0 49 chr1 56082839 56082900 -141112532 - BC1_Mm scRNA scRNA -67 85 28 1 1012 3069 26 2 85 chr1 56083316 56083739 -141111693 + RLTR10 LTR ERVK 1 388 -2 1 1012 309 118 20 0 chr1 56084231 56084282 -141111150 - HAL1-3A_ME LINE L1 -831 2027 1976 1 1012 346 88 29 0 chr1 56084306 56084374 -141111058 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1012 216 250 143 0 chr1 56084374 56084430 -141111002 - ID4 SINE ID -6 77 14 1 1012 266 156 0 15 chr1 56084531 56084596 -141110836 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1012 219 283 11 11 chr1 56084607 56084700 -141110732 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1012 234 174 0 0 chr1 56085033 56085079 -141110353 + C-rich Low_complexity Low_complexity 5 50 0 1 1012 273 317 196 32 chr1 56085599 56085971 -141109461 + L2 LINE L2 2069 2501 -918 1 1012 211 416 26 9 chr1 56086562 56086676 -141108756 + L2b LINE L2 3252 3367 -8 1 1012 3510 18 2 0 chr1 56087063 56087458 -141107974 - MTA_Mm LTR MaLR 0 396 1 1 1012 9122 36 4 1 chr1 56087458 56088553 -141106879 - MTA_Mm-int LTR MaLR 0 1098 1 1 1012 3510 18 2 0 chr1 56088553 56088948 -141106484 - MTA_Mm LTR MaLR 0 396 1 1 1012 183 256 0 0 chr1 56089348 56089387 -141106045 - L2 LINE L2 -823 2596 2558 1 1012 391 314 104 6 chr1 56091322 56091495 -141103937 - L1MEc LINE L1 -5814 586 397 1 1012 198 167 0 0 chr1 56092416 56092452 -141102980 + T-rich Low_complexity Low_complexity 1 36 0 1 1012 494 285 43 38 chr1 56092459 56092644 -141102788 - B3A SINE B2 -30 186 2 1 1012 306 0 0 0 chr1 56092752 56092786 -141102646 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1012 1090 88 0 26 chr1 56092787 56092939 -141102493 - B1_Mus1 SINE Alu 0 148 1 1 1012 296 331 51 34 chr1 56093157 56093332 -141102100 + L2c LINE L2 3178 3355 -32 1 1012 203 308 0 0 chr1 56093565 56093617 -141101815 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1012 479 260 209 25 chr1 56094340 56094498 -141100934 - B3A SINE B2 -6 192 6 1 1012 941 158 0 6 chr1 56095047 56095225 -141100207 + CT-rich Low_complexity Low_complexity 2 178 0 1 1012 548 287 127 4 chr1 56095297 56095616 -141099816 + MTD LTR MaLR 10 415 -4 1 1012 769 306 101 44 chr1 56096246 56096376 -141099056 - Lx8 LINE L1 -2 7471 7340 1 1012 519 69 0 0 chr1 56096376 56096448 -141098984 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1 1012 769 306 101 44 chr1 56096448 56096792 -141098640 - Lx8 LINE L1 -134 7339 6972 1 1012 276 154 0 0 chr1 56096796 56096848 -141098584 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1012 256 285 30 42 chr1 56096865 56097030 -141098402 - Lx8 LINE L1 -518 6955 6793 1 126 9355 121 29 10 chr1 56097053 56099630 -141095802 - Lx3B LINE L1 -10 6963 4337 1 1013 669 261 108 12 chr1 56099630 56099871 -141095561 - Lx8 LINE L1 -674 6799 6536 1 1013 379 370 7 14 chr1 56100061 56100201 -141095231 - B4A SINE B4 -148 144 6 1 1013 349 286 152 0 chr1 56100201 56100296 -141095136 - PB1D10 SINE Alu -2 125 15 1 1013 371 130 0 13 chr1 56100393 56100471 -141094961 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 1 1013 974 141 135 10 chr1 56102370 56102570 -141092862 - URR1A DNA MER1_type -1 225 1 1 1013 386 340 137 56 chr1 56103196 56103533 -141091899 - MTEa LTR MaLR -15 364 1 1 1013 451 335 86 26 chr1 56103659 56103892 -141091540 - MTE-int LTR MaLR -106 1474 1228 1 1013 699 165 0 0 chr1 56103912 56104045 -141091387 + GA-rich Low_complexity Low_complexity 1 133 0 1 1013 396 0 0 0 chr1 56104975 56105019 -141090413 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1013 186 43 0 0 chr1 56105592 56105615 -141089817 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 1013 568 304 25 31 chr1 56105622 56105785 -141089647 - RSINE1 SINE B4 0 165 4 1 1013 1826 155 13 0 chr1 56105825 56106129 -141089303 - Lx2 LINE L1 0 6997 6690 1 1013 271 338 79 13 chr1 56106228 56106531 -141088901 - L1M5 LINE L1 -274 5888 5566 1 1013 291 114 0 0 chr1 56106681 56106725 -141088707 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1013 1003 290 25 12 chr1 56106798 56107123 -141088309 - Lx7 LINE L1 -390 7306 6978 1 1013 1572 253 74 23 chr1 56107120 56107593 -141087839 - Lx7 LINE L1 -859 6837 6341 1 1013 1951 276 89 21 chr1 56107651 56107771 -141087661 - Lx8 LINE L1 -2 7471 7333 1 1013 189 74 0 0 chr1 56107771 56107798 -141087634 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 1013 1951 276 89 21 chr1 56107798 56108374 -141087058 - Lx8 LINE L1 -141 7332 6729 1 1013 297 75 0 0 chr1 56108506 56108546 -141086886 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1013 1222 258 41 24 chr1 56108558 56108927 -141086505 + Lx8 LINE L1 6216 6590 -883 1 1013 4266 132 28 6 chr1 56108926 56109961 -141085471 + Lx4A LINE L1 5312 6386 -672 1 1013 1197 52 0 0 chr1 56109957 56110110 -141085322 - L1Md_F2 LINE L1 -293 6289 6137 1 1013 1872 104 0 17 chr1 56110102 56110394 -141085038 + L1Md_F2 LINE L1 6284 6570 -12 1 1013 1714 162 66 0 chr1 56110395 56110729 -141084703 + Lx4A LINE L1 6372 6727 -331 1 1013 2352 142 32 22 chr1 56110729 56111140 -141084292 + Lx LINE L1 6225 6639 -15 1 1013 226 299 15 0 chr1 56111159 56111226 -141084206 + Kanga1c DNA Tc2 209 275 -454 1 1013 24 0 0 0 chr1 56111352 56111376 -141084056 + AT_rich Low_complexity Low_complexity 1 24 0 1 1013 1591 191 102 3 chr1 56111376 56111718 -141083714 + ORR1C1 LTR MaLR 3 378 0 1 1013 315 71 0 0 chr1 56111976 56112018 -141083414 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1013 24078 90 42 12 chr1 56112044 56117098 -141078334 - L1Md_F2 LINE L1 -2 6580 963 1 1013 294 297 74 26 chr1 56117338 56117528 -141077904 - L1MEc LINE L1 -3728 3213 3015 1 1013 497 327 62 38 chr1 56117606 56117895 -141077537 - L1MEc LINE L1 -4162 2860 2565 1 1013 528 300 82 69 chr1 56117915 56118148 -141077284 + B4A SINE B4 1 236 -56 1 1013 255 284 83 15 chr1 56118337 56118694 -141076738 - L1MEc LINE L1 -4680 2357 1974 1 1013 731 231 8 0 chr1 56118942 56119072 -141076360 - B1_Mur2 SINE Alu 0 149 19 1 1013 371 320 130 27 chr1 56119117 56119493 -141075939 - L1MEc LINE L1 -4892 1531 1117 1 1013 353 339 69 38 chr1 56119982 56120243 -141075189 - L1MEc LINE L1 -5716 706 438 1 1013 1530 248 31 42 chr1 56120311 56120694 -141074738 + Kanga1c DNA Tc2 329 707 -22 1 1013 222 138 52 0 chr1 56121646 56121704 -141073728 + CT-rich Low_complexity Low_complexity 2 62 0 1 1013 300 158 0 0 chr1 56122473 56122530 -141072902 + CT-rich Low_complexity Low_complexity 2 58 0 1 1013 21 0 0 0 chr1 56123703 56123724 -141071708 + AT_rich Low_complexity Low_complexity 1 21 0 1 1013 185 132 26 0 chr1 56124003 56124041 -141071391 + (CATG)n Simple_repeat Simple_repeat 2 40 0 1 1013 22 0 0 0 chr1 56124261 56124283 -141071149 + AT_rich Low_complexity Low_complexity 1 22 0 1 1013 3594 60 0 0 chr1 56124504 56124954 -141070478 - L1Md_T LINE L1 0 6582 6133 1 1013 825 271 106 5 chr1 56124990 56125455 -141069977 - L1MA4A LINE L1 -450 5853 5338 1 1013 6942 74 16 1 chr1 56125908 56127026 -141068406 - L1_Mus2 LINE L1 0 6566 5450 1 1013 534 321 75 12 chr1 56127065 56127320 -141068112 - Lx8 LINE L1 -759 6714 6444 1 1013 277 302 41 41 chr1 56127837 56127958 -141067474 + B3 SINE B2 85 205 -11 1 1013 299 336 25 16 chr1 56128276 56128397 -141067035 - MIRb SINE MIR -14 254 133 1 1013 495 0 0 0 chr1 56129481 56129536 -141065896 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1013 396 88 0 0 chr1 56129699 56129756 -141065676 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1013 329 419 39 5 chr1 56130839 56131043 -141064389 + MLT1J2 LTR MaLR 95 305 -143 1 1013 2250 157 33 35 chr1 56131141 56131596 -141063836 - L1_Mm LINE L1 -317 5566 5113 1 1013 7169 97 4 1 chr1 56131608 56132648 -141062784 + L1_Mus4 LINE L1 5588 6630 -6 1 1013 6260 59 11 4 chr1 56134785 56135584 -141059848 + L1_Mus2 LINE L1 5762 6566 0 1 1013 422 254 33 33 chr1 56135763 56135885 -141059547 + Lx8 LINE L1 6837 6958 -515 1 1013 21 36 0 0 chr1 56136075 56136103 -141059329 + AT_rich Low_complexity Low_complexity 1 28 0 1 1013 24 0 0 0 chr1 56136244 56136268 -141059164 + AT_rich Low_complexity Low_complexity 1 24 0 1 1013 348 64 0 0 chr1 56136270 56136317 -141059115 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1013 2261 235 20 13 chr1 56136867 56137500 -141057932 + Lx9 LINE L1 6797 7434 -210 1 1013 399 222 48 7 chr1 56137511 56137656 -141057776 + Lx9 LINE L1 7493 7643 -1 1 1013 1940 202 138 8 chr1 56137711 56138211 -141057221 + RLTR12A LTR ERVK 1 565 -3 1 1013 240 180 0 0 chr1 56139111 56139161 -141056271 + L1ME2z LINE L1 5902 5951 -493 1 1013 21 36 0 0 chr1 56139376 56139404 -141056028 + AT_rich Low_complexity Low_complexity 1 28 0 1 1013 206 176 0 19 chr1 56139503 56139555 -141055877 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1013 24 32 0 0 chr1 56139582 56139613 -141055819 + AT_rich Low_complexity Low_complexity 1 31 0 1 1013 6619 85 9 14 chr1 56139613 56140547 -141054885 - Lx3_Mus LINE L1 0 7009 6081 1 1013 659 209 29 0 chr1 56140554 56140693 -141054739 - ORR1D1 LTR MaLR -223 151 9 1 1013 230 245 0 0 chr1 56141198 56141251 -141054181 - MLT1B LTR MaLR -12 378 326 1 1013 429 20 0 0 chr1 56142286 56142336 -141053096 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1013 26 0 0 0 chr1 56142875 56142901 -141052531 + AT_rich Low_complexity Low_complexity 1 26 0 1 1013 29 0 0 0 chr1 56143252 56143281 -141052151 + AT_rich Low_complexity Low_complexity 1 29 0 1 1013 822 293 93 18 chr1 56143604 56143938 -141051494 - ORR1E LTR MaLR 0 359 1 1 1013 567 274 41 65 chr1 56144410 56144805 -141050627 + L1M3 LINE L1 3602 4015 -2131 1 1013 684 135 0 0 chr1 56147799 56147925 -141047507 - L1_Mm LINE L1 -2139 3744 3619 1 1013 4479 10 0 0 chr1 56148071 56148564 -141046868 - MT2_Mm LTR ERVL 0 493 1 1 1013 403 154 0 25 chr1 56148753 56148882 -141046550 - L1Md_F2 LINE L1 0 6582 6487 1 1013 1467 22 0 16 chr1 56148980 56149205 -141046227 - L1Md_F3 LINE L1 0 6584 6382 1 1013 195 42 0 0 chr1 56149205 56149229 -141046203 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1013 37298 60 1 23 chr1 56149229 56156109 -141039323 - L1Md_T LINE L1 0 6582 99 1 1013 525 325 91 36 chr1 56157272 56158373 -141037059 + L1M5 LINE L1 2679 3839 -2307 1 1013 1024 231 215 15 chr1 56158788 56159113 -141036319 - MT2A LTR ERVL -7 526 137 1 1013 276 30 0 0 chr1 56159113 56159146 -141036286 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1013 488 280 53 29 chr1 56159147 56159390 -141036042 - Lx9 LINE L1 -174 7470 7222 2 1013 559 62 52 0 chr1 56159394 56159491 -141035941 - L1Md_F3 LINE L1 -30 6554 6453 2 1013 287 336 20 27 chr1 56159492 56159642 -141035790 - Lx9 LINE L1 -417 7227 7079 2 1013 545 239 96 18 chr1 56159681 56159847 -141035585 - Lx9 LINE L1 -957 6687 6509 2 1013 712 218 184 33 chr1 56159916 56160220 -141035212 + Lx9 LINE L1 5026 5375 -472 2 1013 634 322 60 9 chr1 56160297 56160632 -141034800 + Lx9 LINE L1 5653 6004 -1640 2 1013 763 250 31 35 chr1 56160709 56160937 -141034495 - MER96B DNA hAT -30 387 161 2 1013 729 63 0 0 chr1 56161259 56161354 -141034078 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 2 1013 222 380 10 20 chr1 56161388 56161490 -141033942 - B4A SINE B4 -151 141 41 2 1013 289 179 45 0 chr1 56161981 56162048 -141033384 - L1MA6 LINE L1 -24 6276 6207 2 1013 1388 223 79 0 chr1 56162069 56162423 -141033009 + L1_Mur1 LINE L1 671 1052 -5930 2 1013 881 109 20 7 chr1 56162422 56162570 -141032862 - L1_Mur3 LINE L1 -754 5126 4977 2 1013 826 289 27 40 chr1 56162686 56162982 -141032450 - B4A SINE B4 0 292 1 2 1013 1491 297 13 7 chr1 56163100 56163547 -141031885 - Lx9 LINE L1 -801 6843 6394 2 1013 2380 180 67 6 chr1 56163576 56163668 -141031764 - RLTR16 LTR ERVK 0 505 401 2 1013 369 0 0 0 chr1 56163668 56163709 -141031723 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1013 396 0 0 0 chr1 56163709 56163752 -141031680 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1013 2380 180 67 6 chr1 56163752 56164134 -141031298 - RLTR16 LTR ERVK -105 400 2 2 1013 2941 70 0 0 chr1 56164163 56164619 -141030813 + L1_Mus1 LINE L1 5522 5977 -590 2 1013 4709 51 2 0 chr1 56164621 56165225 -141030207 - L1Md_F2 LINE L1 0 5883 5279 2 1013 5375 57 0 0 chr1 56165225 56165896 -141029536 + L1Md_F2 LINE L1 5912 6582 0 2 1013 4958 55 3 0 chr1 56165887 56166505 -141028927 + L1_Mus1 LINE L1 5947 6566 -1 2 1013 36 23 0 0 chr1 56166505 56166548 -141028884 + AT_rich Low_complexity Low_complexity 1 43 0 2 1013 210 299 0 25 chr1 56166643 56166722 -141028710 + CT-rich Low_complexity Low_complexity 1 77 0 2 1013 1628 244 83 65 chr1 56166775 56167402 -141028030 - L1_Rod LINE L1 -83 5764 5127 2 1013 275 268 0 0 chr1 56167426 56167497 -141027935 + Lx9 LINE L1 6840 6910 -734 2 1013 1531 252 85 20 chr1 56167571 56168077 -141027355 + Lx9 LINE L1 7086 7624 -20 2 1013 10026 136 51 6 chr1 56168139 56169683 -141025749 - Lx4A LINE L1 -9 7049 5427 2 1013 2601 69 26 3 chr1 56169683 56170032 -141025400 - L1_Mus1 LINE L1 -2 6565 6209 2 1013 10026 125 28 11 chr1 56170032 56171227 -141024205 - Lx4A LINE L1 -451 5426 4210 2 1013 2409 94 3 9 chr1 56171226 56171569 -141023863 + L1_Mur2 LINE L1 3747 4087 -1790 2 1013 21 0 0 0 chr1 56171576 56171597 -141023835 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 360 304 87 70 chr1 56171698 56172160 -141023272 - L1M2 LINE L1 -1024 5119 4660 2 1013 441 66 0 0 chr1 56172160 56172221 -141023211 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1013 360 304 87 70 chr1 56172221 56172377 -141023055 - L1M2 LINE L1 -1484 4659 4490 2 1013 284 398 99 33 chr1 56172555 56172737 -141022695 - B4A SINE B4 -10 282 89 2 1013 608 303 52 29 chr1 56172749 56173058 -141022374 - RLTR15 LTR ERVK -43 316 1 2 1013 4524 179 71 32 chr1 56173131 56173849 -141021583 - MYSERV6-int LTR ERVK -54 8905 8172 2 1013 491 45 15 0 chr1 56173849 56173915 -141021517 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2 1013 4524 188 68 31 chr1 56173915 56174343 -141021089 - MYSERV6-int LTR ERVK -788 8171 7757 2 1013 3550 257 76 35 chr1 56174361 56175603 -141019829 - MYSERV6-int LTR ERVK -1350 5200 3900 2 1013 3255 129 36 2 chr1 56175603 56176131 -141019301 + Lx2 LINE L1 6450 6995 -2 2 1013 3550 286 51 33 chr1 56176131 56176285 -141019147 - MYSERV6-int LTR ERVK -2651 3899 3824 2 1013 8173 40 4 0 chr1 56176355 56177485 -141017947 - L1Md_F2 LINE L1 0 6582 5447 2 1013 3403 50 14 2 chr1 56177496 56177934 -141017498 - L1Md_F2 LINE L1 -1 6581 6139 2 1013 303 28 0 0 chr1 56178102 56178138 -141017294 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1013 301 278 31 31 chr1 56178839 56178969 -141016463 - RLTR15 LTR ERVK -37 322 193 2 1013 249 200 112 0 chr1 56178969 56179049 -141016383 - L1M2 LINE L1 -2968 3175 3087 2 1013 315 238 52 44 chr1 56179151 56179287 -141016145 + ORR1E LTR MaLR 217 353 -6 2 1013 587 329 22 10 chr1 56179310 56179653 -141015779 - L1M2 LINE L1 -3071 3072 2725 2 1013 198 194 0 0 chr1 56180264 56180326 -141015106 + T-rich Low_complexity Low_complexity 1 62 0 2 1013 22 35 0 0 chr1 56180361 56180390 -141015042 + AT_rich Low_complexity Low_complexity 1 29 0 2 1013 274 219 96 21 chr1 56180541 56180728 -141014704 - Lx9 LINE L1 0 7644 7444 2 1013 204 399 49 34 chr1 56182324 56182529 -141012903 - MIRc SINE MIR -14 254 47 2 1013 277 212 11 56 chr1 56184841 56184931 -141010501 - L1MA6 LINE L1 -13 6287 6202 2 1013 345 289 57 19 chr1 56185650 56185756 -141009676 - PB1D7 SINE Alu -10 110 1 2 1013 720 23 0 0 chr1 56188521 56188607 -141006825 + (TC)n Simple_repeat Simple_repeat 2 87 0 2 1013 190 189 0 0 chr1 56188805 56188842 -141006590 + L4 LINE RTE 1450 1486 -543 2 1013 919 251 21 5 chr1 56189028 56189216 -141006216 - B3 SINE B2 -19 197 7 2 1013 1176 121 22 6 chr1 56189688 56189871 -141005561 + B2_Mm2 SINE B2 1 186 -9 2 1013 841 302 126 15 chr1 56190458 56190784 -141004648 - ORR1D1 LTR MaLR 0 374 13 2 1013 701 206 86 0 chr1 56190786 56190995 -141004437 - Lx9 LINE L1 -8 7636 7410 2 1013 1583 131 21 35 chr1 56191820 56192104 -141003328 + RLTR9A LTR ERVK 89 368 0 2 1013 266 325 40 75 chr1 56193188 56193361 -141002071 + MLT1J2 LTR MaLR 279 445 -3 2 1013 38421 6 1 0 chr1 56193874 56199246 -140996186 + L1Md_A LINE L1 212 5586 -297 2 1013 8995 3 0 0 chr1 56199246 56200242 -140995190 + L1Md_A LINE L1 5587 6582 0 2 1013 38421 6 0 1 chr1 56200242 56200259 -140995173 + L1Md_A LINE L1 5587 5602 -281 2 1013 321 202 247 0 chr1 56200865 56200954 -140994478 - PB1D9 SINE Alu -9 111 1 2 1013 851 261 15 10 chr1 56202864 56203065 -140992367 + B3 SINE B2 3 204 -12 2 1013 435 38 0 0 chr1 56203852 56203905 -140991527 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 2 1013 21 36 0 0 chr1 56204166 56204194 -140991238 + AT_rich Low_complexity Low_complexity 1 28 0 2 1013 231 204 0 0 chr1 56204650 56204699 -140990733 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1013 688 299 119 67 chr1 56204701 56204970 -140990462 - B4 SINE B4 0 292 10 2 1013 23 0 0 0 chr1 56205419 56205442 -140989990 + AT_rich Low_complexity Low_complexity 1 23 0 2 1013 22 56 0 0 chr1 56205662 56205698 -140989734 + AT_rich Low_complexity Low_complexity 1 36 0 2 1013 775 269 78 37 chr1 56206043 56206313 -140989119 - B4A SINE B4 -8 284 4 2 1013 384 138 0 0 chr1 56206773 56206838 -140988594 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1013 249 119 0 0 chr1 56207158 56207200 -140988232 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 2 1013 574 104 37 15 chr1 56207204 56207340 -140988092 + (TCTCTG)n Simple_repeat Simple_repeat 4 142 0 2 1013 21 0 0 0 chr1 56207774 56207795 -140987637 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 489 324 34 27 chr1 56208728 56208877 -140986555 - RSINE1 SINE B4 -13 152 3 2 1013 330 43 21 42 chr1 56209388 56209436 -140985996 + HAL1-3A_ME LINE L1 1966 2012 -846 2 1013 191 290 0 10 chr1 56209444 56209545 -140985887 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1013 288 0 0 0 chr1 56209838 56209870 -140985562 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1013 3593 75 22 12 chr1 56210141 56210638 -140984794 + L1Md_F2 LINE L1 6069 6570 -12 2 1013 470 133 11 0 chr1 56210737 56210827 -140984605 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1013 319 273 114 107 chr1 56211556 56211685 -140983747 + L1MD1 LINE L1 5911 6067 -175 2 1013 258 32 0 0 chr1 56211685 56211716 -140983716 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1013 319 273 114 107 chr1 56211716 56211885 -140983547 + L1MD1 LINE L1 6068 6211 -31 2 1013 1621 59 23 0 chr1 56212691 56212911 -140982521 + L1Md_F3 LINE L1 6344 6568 -16 2 1013 17679 70 16 14 chr1 56212929 56213197 -140982235 - L1VL4 LINE L1 -155 3404 3137 2 1013 189 26 25 50 chr1 56213197 56213237 -140982195 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1013 1347 45 0 0 chr1 56213245 56213424 -140982008 + (CTTTG)n Simple_repeat Simple_repeat 1 179 0 2 1013 17679 70 15 13 chr1 56213424 56215847 -140979585 - L1VL4 LINE L1 -427 3132 700 2 1013 782 191 5 110 chr1 56215852 56216052 -140979380 - L1VL4 LINE L1 -6009 293 115 2 1013 23 0 0 0 chr1 56216711 56216734 -140978698 + AT_rich Low_complexity Low_complexity 1 23 0 2 1013 22 70 0 0 chr1 56216952 56216995 -140978437 + AT_rich Low_complexity Low_complexity 1 43 0 2 1013 1612 73 0 0 chr1 56217027 56217245 -140978187 + L1Md_F2 LINE L1 6364 6581 -1 2 1013 28 0 0 0 chr1 56218313 56218341 -140977091 + AT_rich Low_complexity Low_complexity 1 28 0 2 1013 22 35 0 0 chr1 56218435 56218464 -140976968 + AT_rich Low_complexity Low_complexity 1 29 0 2 1013 312 345 116 17 chr1 56219262 56219495 -140975937 - MIR SINE MIR 0 262 7 2 1013 215 257 28 28 chr1 56219509 56219581 -140975851 + L2 LINE L2 2654 2725 -694 2 1013 339 44 0 0 chr1 56220900 56220945 -140974487 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1013 600 73 0 0 chr1 56220945 56221026 -140974406 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1013 414 0 0 0 chr1 56221886 56221932 -140973500 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1013 553 286 142 32 chr1 56221945 56222191 -140973241 - B4A SINE B4 -18 274 2 2 1013 22 0 0 0 chr1 56222839 56222861 -140972571 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 494 248 30 15 chr1 56223093 56223224 -140972208 - Lx9 LINE L1 -397 7247 7115 2 1013 910 246 147 18 chr1 56223219 56223427 -140972005 + Lx9 LINE L1 7257 7512 -132 2 1013 230 0 0 32 chr1 56223427 56223458 -140971974 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1013 910 246 147 18 chr1 56223458 56223589 -140971843 + Lx9 LINE L1 7513 7639 -5 2 1013 1533 215 32 0 chr1 56223906 56224217 -140971215 + Lx5 LINE L1 6379 6699 -351 2 1013 2381 174 27 9 chr1 56224217 56224659 -140970773 + RLTR11A2 LTR ERVK 78 527 0 2 1013 315 0 0 0 chr1 56229076 56229111 -140966321 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 126 1150 68 0 0 chr1 56229761 56229907 -140965525 + B1_Mus1 SINE Alu 1 146 -2 2 1014 1351 75 15 5 chr1 56229926 56230127 -140965305 + L1_Mus3 LINE L1 6429 6631 -7 2 1014 183 246 0 0 chr1 56231089 56231146 -140964286 + C-rich Low_complexity Low_complexity 4 60 0 2 1014 369 0 0 0 chr1 56231146 56231187 -140964245 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1014 318 299 123 10 chr1 56231199 56231321 -140964111 - B4A SINE B4 -153 139 2 2 1014 27 0 0 0 chr1 56235625 56235652 -140959780 + AT_rich Low_complexity Low_complexity 1 27 0 2 1014 204 67 43 130 chr1 56239144 56239213 -140956219 + A-rich Low_complexity Low_complexity 6 68 0 3 1014 207 105 26 0 chr1 56239155 56239193 -140956239 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1014 725 170 157 0 chr1 56239635 56239788 -140955644 + URR1A DNA MER1_type 1 177 -49 3 1014 326 248 48 0 chr1 56240206 56240311 -140955121 + MER5A1 DNA MER1_type 8 117 -49 3 1014 203 233 122 14 chr1 56240344 56240418 -140955014 - MIRc SINE MIR -82 186 105 3 1014 29 0 0 0 chr1 56241127 56241156 -140954276 + AT_rich Low_complexity Low_complexity 1 29 0 3 1014 447 202 16 8 chr1 56241319 56241444 -140953988 + CT-rich Low_complexity Low_complexity 1 126 0 3 1014 855 144 0 0 chr1 56241678 56241831 -140953601 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1014 1034 212 128 36 chr1 56242458 56242762 -140952670 - IAPEY3_LTR LTR ERVK 0 332 1 3 1014 396 138 15 0 chr1 56243136 56243201 -140952231 - ORR1C1 LTR MaLR -8 370 305 3 1014 240 330 57 0 chr1 56243378 56243484 -140951948 + PB1D10 SINE Alu 6 117 0 3 1014 344 335 87 53 chr1 56243748 56244048 -140951384 + L1MEg LINE L1 673 982 -5102 3 1014 8301 93 16 20 chr1 56244302 56245547 -140949885 - Lx3A LINE L1 -3 6978 5739 3 1014 7092 96 8 2 chr1 56245562 56246610 -140948822 - L1_Mus1 LINE L1 -1 6566 5516 3 1014 2387 145 49 0 chr1 56247261 56247668 -140947764 - Lx3C LINE L1 -896 6080 5654 3 1014 359 301 18 30 chr1 56248083 56248251 -140947181 + L1MD2 LINE L1 5810 5975 -384 3 1014 324 200 0 0 chr1 56248424 56248524 -140946908 + GA-rich Low_complexity Low_complexity 2 101 0 3 1014 337 278 85 65 chr1 56248615 56248815 -140946617 + L1ME3A LINE L1 5871 6074 -88 3 1014 525 32 0 0 chr1 56249437 56249500 -140945932 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 3 1014 3819 64 41 6 chr1 56249505 56250021 -140945411 - L1_Mus1 LINE L1 0 6567 6034 3 1014 10192 70 34 0 chr1 56250021 56251551 -140943881 + L1Md_F2 LINE L1 4469 6050 -532 3 1014 66 14 0 0 chr1 56252956 56253029 -140942403 + AT_rich Low_complexity Low_complexity 1 73 0 3 1014 319 176 139 12 chr1 56253520 56253606 -140941826 + B4 SINE B4 103 199 -93 3 1014 684 149 241 0 chr1 56253886 56254027 -140941405 - URR1B DNA MER1_type -46 179 5 3 1014 963 63 87 0 chr1 56254614 56254741 -140940691 + B1_Mm SINE Alu 1 138 -9 3 1014 206 32 32 0 chr1 56254741 56254772 -140940660 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1014 427 92 53 0 chr1 56254815 56254891 -140940541 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 3 1014 501 151 0 0 chr1 56254927 56255013 -140940419 + (TGGA)n Simple_repeat Simple_repeat 4 89 0 3 1014 370 354 20 0 chr1 56255164 56255311 -140940121 + MER5A DNA MER1_type 35 184 -5 3 1014 801 369 7 43 chr1 56256469 56256772 -140938660 + B4A SINE B4 1 292 0 3 1014 305 62 21 0 chr1 56256775 56256823 -140938609 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1014 241 286 0 0 chr1 56256872 56256942 -140938490 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1014 964 302 99 28 chr1 56259784 56259876 -140935556 + L1MA4 LINE L1 2946 3035 -3108 3 1014 1113 76 0 14 chr1 56259876 56260013 -140935419 + B1_Mus2 SINE Alu 1 137 -10 3 1014 293 0 27 0 chr1 56260013 56260050 -140935382 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1014 964 302 99 28 chr1 56260059 56260722 -140934710 + L1MA4 LINE L1 3036 3755 -2388 3 1014 939 49 0 0 chr1 56260855 56260977 -140934455 - L1_Mus2 LINE L1 -1 6565 6444 3 1014 649 293 93 43 chr1 56261024 56261693 -140933739 + L1MA4 LINE L1 5163 5872 -428 3 1014 312 27 0 0 chr1 56261693 56261730 -140933702 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 1014 291 28 0 0 chr1 56261785 56261821 -140933611 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1014 483 130 61 12 chr1 56261825 56261989 -140933443 + (CAGAGA)n Simple_repeat Simple_repeat 2 173 0 3 1014 314 309 160 30 chr1 56261989 56262189 -140933243 + HAL1-3A_ME LINE L1 1982 2207 -651 3 1014 234 213 46 63 chr1 56262241 56262416 -140933016 + (ATATG)n Simple_repeat Simple_repeat 4 175 0 3 1014 332 331 0 83 chr1 56262793 56262938 -140932494 + B1F1 SINE Alu 4 136 -13 3 1014 470 326 43 0 chr1 56263186 56263324 -140932108 + RSINE1 SINE B4 12 155 -10 3 1014 23 0 0 0 chr1 56264907 56264930 -140930502 + AT_rich Low_complexity Low_complexity 1 23 0 3 1014 459 35 0 0 chr1 56264950 56265007 -140930425 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1014 590 282 124 49 chr1 56265046 56265123 -140930309 - B4 SINE B4 -4 288 213 3 1014 234 23 22 44 chr1 56265123 56265168 -140930264 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1014 590 282 124 49 chr1 56265168 56265355 -140930077 - B4 SINE B4 -80 212 4 3 1014 312 386 39 65 chr1 56266577 56266732 -140928700 + MER20 DNA MER1_type 4 154 -629 3 1014 260 339 111 17 chr1 56267211 56267328 -140928104 + MER5B DNA MER1_type 50 177 -1 3 1014 642 72 0 0 chr1 56269741 56269838 -140925594 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 1014 198 0 0 0 chr1 56269838 56269860 -140925572 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1014 182 37 0 36 chr1 56270042 56270070 -140925362 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1014 273 325 133 25 chr1 56272019 56272259 -140923173 + L2 LINE L2 2244 2509 -910 3 1014 2429 162 85 8 chr1 56273433 56273948 -140921484 + L1_Mur3 LINE L1 4945 5499 -381 3 1014 442 182 13 0 chr1 56274016 56274170 -140921262 + (TA)n Simple_repeat Simple_repeat 1 156 0 3 1014 656 103 0 0 chr1 56274182 56274269 -140921163 + L1_Mur3 LINE L1 5553 5639 -241 3 1014 5408 261 50 27 chr1 56274271 56275783 -140919649 + Lx6 LINE L1 5739 7285 -175 3 1014 556 167 203 8 chr1 56276188 56276321 -140919111 + Lx6 LINE L1 7299 7457 -3 3 1014 1034 304 96 34 chr1 56278073 56278509 -140916923 + MLT1C LTR MaLR 5 467 0 3 1014 548 290 104 59 chr1 56278631 56278987 -140916445 + MTEa LTR MaLR 1 372 -7 3 1014 9304 132 7 21 chr1 56280138 56282561 -140912871 - L1_Mus4 LINE L1 -5 6631 4254 3 1014 933 320 116 34 chr1 56283981 56284447 -140910985 + MLT2B1 LTR ERVL 17 520 0 3 1014 427 372 129 7 chr1 56284501 56284796 -140910636 - LTR16A LTR ERVL -85 366 36 3 1014 2768 70 0 8 chr1 56284813 56285175 -140910257 - L1_Mus1 LINE L1 0 6567 6209 3 1014 23 0 0 0 chr1 56286184 56286207 -140909225 + AT_rich Low_complexity Low_complexity 1 23 0 3 1014 31 26 0 0 chr1 56286565 56286603 -140908829 + AT_rich Low_complexity Low_complexity 1 38 0 3 1014 31 26 0 0 chr1 56286743 56286781 -140908651 + AT_rich Low_complexity Low_complexity 1 38 0 3 1014 180 254 0 0 chr1 56286893 56286952 -140908480 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1014 213 152 43 0 chr1 56287101 56287147 -140908285 + CT-rich Low_complexity Low_complexity 2 49 0 3 1014 2093 211 51 16 chr1 56287179 56287533 -140907899 - RLTR16 LTR ERVK 0 505 157 3 1014 849 54 0 0 chr1 56287533 56287644 -140907788 + (TCCCC)n Simple_repeat Simple_repeat 4 114 0 3 1014 2093 211 51 16 chr1 56287644 56287777 -140907655 - RLTR16 LTR ERVK -349 156 2 3 1014 2900 132 9 0 chr1 56288131 56288579 -140906853 + Lx2 LINE L1 5827 6278 -719 3 1014 3643 133 19 5 chr1 56288579 56289155 -140906277 + Lx LINE L1 6065 6648 -6 3 1014 476 319 36 0 chr1 56289654 56289820 -140905612 + MTE-int LTR MaLR 225 396 -1184 3 1014 2572 297 113 30 chr1 56289835 56290760 -140904672 + MTE-int LTR MaLR 545 1546 -34 3 1014 1133 290 25 19 chr1 56290773 56291096 -140904336 + MTE2a LTR MaLR 1 325 -54 3 1014 7763 128 44 10 chr1 56291344 56293454 -140901978 - Lx LINE L1 -6 6648 4494 3 1014 1086 174 0 0 chr1 56293453 56293643 -140901789 + L1_Mur2 LINE L1 4251 4440 -1437 3 1014 266 283 0 21 chr1 56294887 56294905 -140900527 + ID4_ SINE ID 18 72 -6 3 1014 269 214 0 0 chr1 56294905 56294947 -140900485 + tRNA-Ala-GCY_ tRNA tRNA 25 66 -9 3 1014 4889 90 102 0 chr1 56295578 56296287 -140899145 + L1_Mus3 LINE L1 5858 6638 0 3 1014 597 322 7 7 chr1 56297184 56297334 -140898098 + RSINE1 SINE B4 15 164 -1 3 1014 398 161 69 5 chr1 56298267 56298865 -140896567 + CT-rich Low_complexity Low_complexity 1 635 0 3 1014 218 204 22 22 chr1 56300216 56300306 -140895126 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 1014 293 189 26 0 chr1 56300371 56300448 -140894984 + L1MA6 LINE L1 6070 6152 -151 3 1014 204 40 0 0 chr1 56303046 56303071 -140892361 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1014 255 31 0 0 chr1 56305291 56305323 -140890109 + (TTG)n Simple_repeat Simple_repeat 3 34 0 3 1014 258 91 44 29 chr1 56306066 56306134 -140889298 + A-rich Low_complexity Low_complexity 2 70 0 3 1014 256 179 13 13 chr1 56307986 56308065 -140887367 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1014 27 73 0 0 chr1 56308068 56308123 -140887309 + AT_rich Low_complexity Low_complexity 1 55 0 3 1014 204 40 0 0 chr1 56308534 56308559 -140886873 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1014 413 148 11 0 chr1 56308809 56308890 -140886542 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1014 405 0 0 0 chr1 56308890 56308935 -140886497 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1014 413 148 11 0 chr1 56308935 56308941 -140886491 + (CA)n Simple_repeat Simple_repeat 2 7 0 3 1014 480 18 0 0 chr1 56308963 56309020 -140886412 + (TAAAA)n Simple_repeat Simple_repeat 5 61 0 3 1014 247 291 112 37 chr1 56311026 56311133 -140884299 - L2a LINE L2 0 3426 3312 3 1014 493 349 33 0 chr1 56311201 56311353 -140884079 - RSINE1 SINE B4 -3 162 6 3 1014 22 35 0 0 chr1 56311362 56311391 -140884041 + AT_rich Low_complexity Low_complexity 1 29 0 3 1014 181 139 47 0 chr1 56312787 56312830 -140882602 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1014 27 0 0 0 chr1 56312966 56312993 -140882439 + AT_rich Low_complexity Low_complexity 1 27 0 3 1014 202 381 97 27 chr1 56313092 56313278 -140882154 - MIRb SINE MIR -55 213 15 3 1014 2362 156 93 104 chr1 56315603 56316298 -140879134 + RMER6C LTR ERVK 3 690 0 3 1014 4868 93 6 24 chr1 56316349 56317061 -140878371 - L1_Mus3 LINE L1 -6 6632 5934 3 1014 1272 70 0 0 chr1 56317061 56317233 -140878199 + L1_Mus3 LINE L1 5757 5928 -638 3 1014 23 33 0 0 chr1 56317339 56317369 -140878063 + AT_rich Low_complexity Low_complexity 1 30 0 3 1014 503 334 36 103 chr1 56317440 56317605 -140877827 + ID_B1 SINE B4 73 224 0 4 1014 993 267 108 6 chr1 56317647 56317982 -140877450 + ORR1D2 LTR MaLR 2 370 0 4 1014 1092 282 125 83 chr1 56317982 56318461 -140876971 + ORR1D2-int LTR MaLR 1 499 -871 4 1014 1795 247 138 29 chr1 56318462 56319084 -140876348 + ORR1D2-int LTR MaLR 681 1370 0 4 1014 914 286 99 10 chr1 56319084 56319377 -140876055 + ORR1D2 LTR MaLR 1 319 -51 4 1014 21 57 0 0 chr1 56319582 56319617 -140875815 + AT_rich Low_complexity Low_complexity 1 35 0 4 1014 242 177 48 16 chr1 56319805 56319918 -140875514 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 1014 424 291 52 40 chr1 56320001 56320244 -140875188 - L1M2 LINE L1 -715 5582 5327 4 1014 293 287 83 15 chr1 56320262 56320467 -140874965 - L1M2 LINE L1 -1056 5087 4869 4 1014 180 0 0 0 chr1 56320480 56320500 -140874932 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1014 2525 282 90 50 chr1 56320574 56322347 -140873085 - L1M2 LINE L1 -1327 4816 2973 4 1014 220 229 0 0 chr1 56322362 56322410 -140873022 + T-rich Low_complexity Low_complexity 1 48 0 4 1014 915 130 0 0 chr1 56322410 56322703 -140872729 + (TG)n Simple_repeat Simple_repeat 1 293 0 4 1014 229 337 24 12 chr1 56322736 56322820 -140872612 - RSINE1 SINE B4 -46 119 35 4 1014 409 288 91 58 chr1 56322906 56323522 -140871910 - L1M2 LINE L1 -3200 2943 2308 4 1014 5760 77 76 6 chr1 56324640 56325467 -140869965 - L1Md_F3 LINE L1 0 6584 5700 4 1014 1989 86 0 44 chr1 56325461 56325754 -140869678 + L1_Mm LINE L1 4848 5127 -756 4 1014 319 219 42 34 chr1 56325774 56325892 -140869540 - Lx6 LINE L1 -25 7435 7317 4 1014 23 33 0 0 chr1 56325982 56326012 -140869420 + AT_rich Low_complexity Low_complexity 1 30 0 4 1014 290 43 0 61 chr1 56326123 56326172 -140869260 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1014 3736 154 50 6 chr1 56326172 56326807 -140868625 - Lx4A LINE L1 -6 7052 6390 4 1014 2077 168 140 16 chr1 56327298 56327735 -140867697 + RMER1B Other Other 573 1063 -3 4 1014 28 71 0 0 chr1 56327916 56327972 -140867460 + AT_rich Low_complexity Low_complexity 1 56 0 4 1014 578 14 14 0 chr1 56328932 56329003 -140866429 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1014 285 135 0 0 chr1 56329951 56330003 -140865429 + (CTG)n Simple_repeat Simple_repeat 2 53 0 4 1014 534 103 0 0 chr1 56330005 56330092 -140865340 + (TGG)n Simple_repeat Simple_repeat 1 87 0 4 1014 7619 65 9 1 chr1 56330116 56331088 -140864344 + L1_Mus1 LINE L1 5587 6566 -1 4 1014 308 156 43 32 chr1 56331090 56331183 -140864249 + (TTAA)n Simple_repeat Simple_repeat 1 94 0 4 1014 19581 17 0 0 chr1 56331229 56334345 -140861087 - L1Md_T LINE L1 -2 6580 3465 4 1014 1134 258 70 34 chr1 56335570 56336011 -140859421 + L1M3 LINE L1 3352 3808 -2332 4 1014 1014 297 71 24 chr1 56336020 56336399 -140859033 + MTD LTR MaLR 9 405 -14 4 1014 613 247 101 7 chr1 56336492 56336769 -140858663 + L1M3 LINE L1 4477 4779 -1361 4 1014 1951 142 8 16 chr1 56336766 56337137 -140858295 - L1_Mm LINE L1 -1009 4874 4507 4 1014 9678 49 41 0 chr1 56337134 56338724 -140856708 + L1Md_A LINE L1 3759 5586 -297 4 1014 8769 17 0 0 chr1 56338724 56339720 -140855712 + L1Md_A LINE L1 5587 6582 0 4 1014 1205 240 9 51 chr1 56339720 56339793 -140855639 + L1MB1 LINE L1 5616 5671 -497 4 1014 228 184 17 17 chr1 56339900 56339970 -140855462 + L1MB1 LINE L1 5857 5926 -263 4 1014 426 211 0 0 chr1 56339970 56340079 -140855353 + (CATATA)n Simple_repeat Simple_repeat 4 112 0 4 1014 397 282 42 65 chr1 56340087 56340303 -140855129 + L1MB1 LINE L1 5948 6158 -10 4 1014 486 340 63 5 chr1 56340416 56340605 -140854827 + MER58A DNA MER1_type 1 200 -24 4 1014 2192 83 7 10 chr1 56341453 56341758 -140853674 - L1_Mus1 LINE L1 0 6567 6264 4 1014 5562 87 11 0 chr1 56341764 56342550 -140852882 + L1_Mm LINE L1 5058 5852 -31 4 1014 431 278 96 24 chr1 56342591 56342757 -140852675 - MER46C DNA MER2_type -119 219 42 4 1014 202 220 20 20 chr1 56342839 56342890 -140852542 - MIR SINE MIR -120 142 92 4 1014 219 69 0 0 chr1 56344297 56344326 -140851106 + (CAAAG)n Simple_repeat Simple_repeat 1 29 0 4 1014 316 261 60 23 chr1 56344928 56345061 -140850371 - L1MA6 LINE L1 0 6300 6163 4 1014 21 36 0 0 chr1 56345110 56345138 -140850294 + AT_rich Low_complexity Low_complexity 1 28 0 4 1014 513 0 0 0 chr1 56345245 56345302 -140850130 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1014 21 0 0 0 chr1 56346979 56347000 -140848432 + AT_rich Low_complexity Low_complexity 1 21 0 4 1014 336 253 48 94 chr1 56347290 56347482 -140847950 + B3 SINE B2 32 211 -5 4 1014 252 297 61 26 chr1 56347623 56347737 -140847695 + MIR SINE MIR 9 126 -136 4 1014 638 291 7 0 chr1 56348170 56348311 -140847121 + B1_Mur1 SINE Alu 7 148 -1 4 1014 296 282 51 0 chr1 56348992 56349070 -140846362 - Tigger5 DNA MER2_type 0 2406 2325 4 1014 1129 82 0 0 chr1 56349072 56349218 -140846214 + B1_Mm SINE Alu 2 147 0 4 1014 377 349 34 0 chr1 56349284 56349433 -140845999 - Tigger5 DNA MER2_type -2174 232 79 4 1014 8601 4 0 0 chr1 56349440 56350435 -140844997 - L1Md_A LINE L1 0 6582 5588 4 1014 231 343 0 0 chr1 56350435 56350502 -140844930 - Tigger5 DNA MER2_type -2315 91 25 4 1014 286 152 41 52 chr1 56350794 56350891 -140844541 + (TGAG)n Simple_repeat Simple_repeat 1 96 0 4 1014 24 0 0 0 chr1 56351142 56351166 -140844266 + AT_rich Low_complexity Low_complexity 1 24 0 4 1014 2480 51 0 0 chr1 56352475 56352786 -140842646 + L1Md_A LINE L1 6272 6582 0 4 1014 242 336 64 53 chr1 56353617 56353881 -140841551 + L2 LINE L2 2742 3008 -411 4 1014 360 203 0 0 chr1 56354614 56354678 -140840754 - RLTR23 LTR ERV1 0 430 367 4 1014 243 269 70 108 chr1 56354713 56354842 -140840590 - RLTR23 LTR ERV1 -68 362 239 4 1014 486 217 0 0 chr1 56355034 56355117 -140840315 - RLTR23 LTR ERV1 -340 90 8 4 1014 455 331 51 13 chr1 56355159 56355315 -140840117 + RSINE1 SINE B4 3 164 -1 4 1014 5356 38 0 0 chr1 56355465 56356099 -140839333 + L1Md_T LINE L1 5949 6582 0 4 1014 477 0 0 0 chr1 56358277 56358330 -140837102 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1014 369 0 0 0 chr1 56358330 56358370 -140837062 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1014 903 246 76 0 chr1 56358724 56358960 -140836472 + Lx5 LINE L1 6794 7047 -3 4 1015 435 288 31 44 chr1 56361689 56361849 -140833583 - L2a LINE L2 0 3426 3269 4 1015 647 57 11 0 chr1 56362362 56362450 -140832982 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1015 489 34 0 0 chr1 56363067 56363126 -140832306 + (TAG)n Simple_repeat Simple_repeat 1 59 0 4 1015 842 316 15 33 chr1 56363383 56363442 -140831990 + B4 SINE B4 25 82 -210 4 1015 279 0 0 0 chr1 56363442 56363473 -140831959 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1015 842 316 15 33 chr1 56363473 56363685 -140831747 + B4 SINE B4 83 290 -2 4 1015 342 0 0 0 chr1 56363693 56363731 -140831701 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1015 288 373 23 65 chr1 56363740 56363955 -140831477 + MLT1H LTR MaLR 33 238 -311 4 1015 458 291 195 5 chr1 56364275 56364465 -140830967 + MTD LTR MaLR 1 226 -193 4 1015 1114 183 0 29 chr1 56364480 56364688 -140830744 - URR1B DNA MER1_type 0 225 24 4 1015 523 250 81 0 chr1 56364687 56364835 -140830597 + MTD LTR MaLR 246 405 -14 4 1015 281 336 128 8 chr1 56365426 56365543 -140829889 - MER74A LTR ERVL -272 286 156 4 1015 180 393 101 17 chr1 56368046 56368165 -140827267 + L2b LINE L2 3233 3361 -14 4 1015 478 326 42 16 chr1 56368313 56368503 -140826929 - B4A SINE B4 -9 283 89 4 1015 234 337 0 56 chr1 56369276 56369383 -140826049 - MIRb SINE MIR -50 218 118 4 1015 271 339 59 68 chr1 56370081 56370318 -140825114 + MTE2a LTR MaLR 141 375 -4 4 1015 1074 112 154 10 chr1 56371345 56371553 -140823879 + Lx3B LINE L1 6736 6973 0 4 1015 240 86 0 0 chr1 56371559 56371594 -140823838 + (TAA)n Simple_repeat Simple_repeat 3 37 0 4 1015 227 291 18 0 chr1 56371760 56371815 -140823617 + PB1D10 SINE Alu 56 111 -6 4 1015 466 317 88 44 chr1 56372282 56372533 -140822899 - L2 LINE L2 -401 3018 2757 4 1015 421 354 27 7 chr1 56373053 56373201 -140822231 + B4A SINE B4 1 151 -141 4 1015 781 119 0 12 chr1 56373318 56373480 -140821952 + (TC)n Simple_repeat Simple_repeat 1 160 0 4 1015 229 218 190 29 chr1 56373583 56373665 -140821767 - L1ME3B LINE L1 -182 6058 5977 4 1015 249 108 0 0 chr1 56373665 56373702 -140821730 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1015 229 218 190 29 chr1 56373702 56373756 -140821676 - L1ME3B LINE L1 -264 5976 5900 4 1015 256 226 22 45 chr1 56373770 56373904 -140821528 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 1015 225 296 37 0 chr1 56373929 56374010 -140821422 - L1ME3B LINE L1 -377 5863 5780 4 1015 726 260 53 24 chr1 56374592 56374801 -140820631 + B3 SINE B2 2 216 0 4 1015 636 329 47 28 chr1 56374994 56375247 -140820185 + B4A SINE B4 6 263 -29 4 1015 218 239 29 29 chr1 56375263 56375332 -140820100 + (CATG)n Simple_repeat Simple_repeat 4 72 0 4 1015 315 0 0 0 chr1 56375374 56375409 -140820023 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1015 335 366 77 55 chr1 56375423 56375695 -140819737 - B4A SINE B4 0 292 15 4 1015 235 344 22 116 chr1 56375695 56375833 -140819599 - RSINE1 SINE B4 -38 127 3 4 1015 316 293 13 0 chr1 56376008 56376083 -140819349 + MER63D DNA AcHobo 292 367 -694 4 1015 285 75 0 0 chr1 56376110 56376150 -140819282 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1015 340 326 146 67 chr1 56376229 56376765 -140818667 + L2 LINE L2 1995 2572 -847 4 1015 751 330 28 38 chr1 56376790 56377080 -140818352 - B4A SINE B4 0 292 6 4 1015 180 0 0 0 chr1 56377301 56377321 -140818111 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1015 233 232 14 0 chr1 56377735 56377804 -140817628 + CT-rich Low_complexity Low_complexity 2 71 0 4 1015 894 103 0 0 chr1 56377808 56377944 -140817488 + (TTC)n Simple_repeat Simple_repeat 2 137 0 4 1015 587 382 38 43 chr1 56380008 56380243 -140815189 - B4A SINE B4 -6 286 53 4 1015 369 111 19 0 chr1 56380249 56380303 -140815129 + HAL1-3A_ME LINE L1 1976 2030 -828 4 1015 278 102 34 0 chr1 56380307 56380366 -140815066 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 4 1015 395 132 29 0 chr1 56380367 56380435 -140814997 + HAL1-3A_ME LINE L1 1976 2045 -813 4 1015 3960 43 0 0 chr1 56380539 56381073 -140814359 - L1Md_F2 LINE L1 -495 6087 5554 4 1015 3990 70 2 4 chr1 56381074 56381592 -140813840 + L1Md_F2 LINE L1 6054 6570 -12 4 1015 686 270 179 21 chr1 56382421 56382712 -140812720 + ORR1D2 LTR MaLR 30 366 -8 4 1015 290 319 89 0 chr1 56383345 56383480 -140811952 - MER53 DNA hAT 0 193 47 4 1015 558 256 43 120 chr1 56383802 56384011 -140811421 + B3A SINE B2 1 193 -5 4 1015 286 351 92 12 chr1 56384885 56385058 -140810374 + MIR SINE MIR 67 253 -9 4 1015 21 36 0 0 chr1 56385171 56385199 -140810233 + AT_rich Low_complexity Low_complexity 1 28 0 4 1015 283 333 64 45 chr1 56385495 56385762 -140809670 + Lx8 LINE L1 6990 7261 -212 5 1015 22 35 0 0 chr1 56385937 56385966 -140809466 + AT_rich Low_complexity Low_complexity 1 29 0 5 1015 441 0 0 0 chr1 56386631 56386680 -140808752 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1015 405 304 35 108 chr1 56386688 56387060 -140808372 - Lx9 LINE L1 -195 7449 7105 5 1015 240 273 22 11 chr1 56388115 56388204 -140807228 - L1MC4 LINE L1 -1040 7002 6913 5 1015 332 119 17 0 chr1 56389510 56389569 -140805863 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1015 213 241 0 0 chr1 56391472 56391526 -140803906 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1015 318 170 0 0 chr1 56392679 56392773 -140802659 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 5 1015 261 177 0 0 chr1 56392823 56392902 -140802530 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 5 1015 256 355 66 0 chr1 56393763 56393884 -140801548 - MIR SINE MIR -62 200 72 5 1015 41 36 0 0 chr1 56394710 56394765 -140800667 + AT_rich Low_complexity Low_complexity 1 55 0 5 1015 525 184 131 63 chr1 56395173 56395323 -140800109 - Lx9 LINE L1 -1 7643 7478 5 1015 519 17 0 0 chr1 56395323 56395383 -140800049 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1015 525 184 131 63 chr1 56395383 56395453 -140799979 - Lx9 LINE L1 -167 7477 7409 5 1015 381 58 0 0 chr1 56395591 56395643 -140799789 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1015 239 349 68 93 chr1 56395736 56396014 -140799418 + MER102c DNA MER1_type 51 321 -10 5 1015 219 36 0 0 chr1 56396179 56396207 -140799225 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1015 418 232 62 39 chr1 56398316 56398446 -140796986 - L1M4 LINE L1 -419 5765 5633 5 1015 518 301 41 18 chr1 56398548 56398768 -140796664 + L1MB8 LINE L1 5881 6105 -73 5 1015 204 143 0 0 chr1 56400113 56400155 -140795277 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1015 210 143 0 0 chr1 56400596 56400631 -140794801 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1015 811 164 77 66 chr1 56401113 56401296 -140794136 - B2_Mm1t SINE B2 -8 185 1 5 1015 22 0 0 0 chr1 56401511 56401533 -140793899 + AT_rich Low_complexity Low_complexity 1 22 0 5 1015 2779 138 90 40 chr1 56402806 56403350 -140792082 - RLTR20B3 LTR ERVK -2 575 5 5 1015 486 0 0 0 chr1 56403372 56403426 -140792006 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1015 201 330 81 50 chr1 56403753 56403852 -140791580 - L2b LINE L2 -34 3341 3240 5 1015 230 132 0 0 chr1 56404372 56404410 -140791022 - MTEb LTR MaLR 0 379 342 5 1015 716 306 121 44 chr1 56404597 56404870 -140790562 - MTEb LTR MaLR -85 294 1 5 1015 305 319 53 0 chr1 56405202 56405315 -140790117 + MER5A1 DNA MER1_type 48 166 0 5 1015 207 0 0 0 chr1 56406933 56406956 -140788476 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1015 907 158 52 6 chr1 56407723 56407895 -140787537 + URR1A DNA MER1_type 47 226 0 5 1015 367 314 64 6 chr1 56408378 56408535 -140786897 - MER5A1 DNA MER1_type 0 166 1 5 1015 773 245 209 13 chr1 56408944 56409253 -140786179 + ORR1D1 LTR MaLR 1 370 -4 5 1015 531 0 0 0 chr1 56410835 56410894 -140784538 + (CAA)n Simple_repeat Simple_repeat 2 60 0 5 1015 274 324 60 68 chr1 56411389 56411624 -140783808 - MER121 Unknown Unknown -16 396 164 5 1015 222 246 48 32 chr1 56412511 56412574 -140782858 + L2b LINE L2 3237 3300 -75 5 1015 1575 104 8 0 chr1 56412809 56413049 -140782383 + L1_Mus3 LINE L1 6396 6637 -1 5 1015 441 0 0 0 chr1 56413956 56414005 -140781427 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1015 186 345 69 21 chr1 56415546 56415691 -140779741 - MIR SINE MIR -3 259 108 5 1015 826 289 22 0 chr1 56415738 56415966 -140779466 - Lx8 LINE L1 -414 7059 6827 5 1015 288 231 15 107 chr1 56416002 56416133 -140779299 + Lx8 LINE L1 7345 7463 -10 5 1015 327 25 0 0 chr1 56416145 56416185 -140779247 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1015 200 0 100 0 chr1 56420497 56420527 -140774905 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 5 1015 22 0 0 0 chr1 56423558 56423580 -140771852 + AT_rich Low_complexity Low_complexity 1 22 0 5 1015 478 286 167 0 chr1 56424101 56424269 -140771163 + ID_B1 SINE B4 6 201 -23 5 1015 236 250 0 12 chr1 56424798 56424879 -140770553 + GA-rich Low_complexity Low_complexity 2 81 0 5 1015 432 307 92 70 chr1 56426428 56426489 -140768943 + B4 SINE B4 3 64 -228 5 1015 717 43 0 0 chr1 56426489 56426582 -140768850 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 1015 578 238 158 11 chr1 56426582 56426765 -140768667 + B3 SINE B2 2 211 -5 5 1015 432 307 92 70 chr1 56426765 56426986 -140768446 + B4 SINE B4 65 291 -1 5 1015 476 301 19 13 chr1 56427337 56427492 -140767940 + RSINE1 SINE B4 3 158 -7 5 1015 21 36 0 0 chr1 56427492 56427520 -140767912 + AT_rich Low_complexity Low_complexity 1 28 0 5 1015 232 281 15 45 chr1 56427669 56427736 -140767696 - PB1D9 SINE Alu -7 113 49 5 1015 2294 137 8 8 chr1 56428817 56429171 -140766261 - ORR1B2 LTR MaLR -8 359 6 5 1015 792 189 193 6 chr1 56429537 56429718 -140765714 - B3 SINE B2 0 216 2 5 1015 23 33 0 0 chr1 56429718 56429748 -140765684 + AT_rich Low_complexity Low_complexity 1 30 0 5 1015 323 235 30 10 chr1 56430528 56430627 -140764805 - Lx6 LINE L1 -169 7291 7191 5 1015 197 259 93 12 chr1 56431944 56432030 -140763402 - L4 LINE RTE -3 2026 1934 5 1015 263 339 107 0 chr1 56432046 56432158 -140763274 + B1F SINE Alu 9 132 -17 5 1015 310 396 25 25 chr1 56432566 56432763 -140762669 + MER20 DNA MER1_type 23 219 0 5 1015 189 0 0 0 chr1 56433483 56433504 -140761928 + (TATG)n Simple_repeat Simple_repeat 3 23 0 5 1015 1849 233 62 43 chr1 56434182 56434622 -140760810 + RLTR20A LTR ERVK 1 448 -93 5 1015 189 0 0 0 chr1 56434622 56434643 -140760789 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1015 1849 233 62 43 chr1 56434643 56434731 -140760701 + RLTR20A LTR ERVK 449 538 -3 5 1015 21 0 0 0 chr1 56434744 56434765 -140760667 + AT_rich Low_complexity Low_complexity 1 21 0 5 1015 411 73 0 0 chr1 56434881 56434936 -140760496 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1015 2873 84 7 17 chr1 56435039 56435450 -140759982 - MTB_Mm LTR MaLR 0 407 1 5 1015 35298 36 0 0 chr1 56437176 56442604 -140752828 + L1Md_T LINE L1 67 5589 -297 5 1015 8964 7 0 0 chr1 56442604 56443600 -140751832 + L1Md_T LINE L1 5590 6585 0 5 1015 376 401 13 20 chr1 56444303 56444453 -140750979 + RSINE1 SINE B4 4 152 -13 5 1015 23 0 0 0 chr1 56445249 56445272 -140750160 + AT_rich Low_complexity Low_complexity 1 23 0 5 1015 5574 104 2 1 chr1 56445832 56446665 -140748767 - L1_Mur1 LINE L1 -2070 3816 2983 5 1015 5112 87 3 6 chr1 56446666 56447373 -140748059 + L1_Mur1 LINE L1 5131 5835 -51 5 1015 252 0 0 0 chr1 56447492 56447520 -140747912 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1015 282 298 35 12 chr1 56448563 56448648 -140746784 - B3 SINE B2 -2 214 128 5 1015 21 0 0 0 chr1 56449363 56449384 -140746048 + AT_rich Low_complexity Low_complexity 1 21 0 5 1015 3426 79 29 6 chr1 56449384 56449867 -140745565 - Lx3_Mus LINE L1 0 7009 6516 5 1015 819 0 0 0 chr1 56451150 56451241 -140744191 + (TTC)n Simple_repeat Simple_repeat 2 92 0 5 1015 240 122 0 0 chr1 56451815 56451856 -140743576 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1015 201 39 0 0 chr1 56452460 56452486 -140742946 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1015 29 0 0 0 chr1 56453156 56453185 -140742247 + AT_rich Low_complexity Low_complexity 1 29 0 5 1015 358 258 31 41 chr1 56454535 56454632 -140740800 - B1F SINE Alu 0 149 54 5 1015 281 350 14 68 chr1 56454632 56454682 -140740750 - ID_B1 SINE B4 -3 221 83 5 1015 201 274 137 0 chr1 56454750 56454823 -140740609 + MIR SINE MIR 175 257 -5 5 1015 26 0 0 0 chr1 56455057 56455083 -140740349 + AT_rich Low_complexity Low_complexity 1 26 0 5 1015 30 27 0 0 chr1 56455424 56455461 -140739971 + AT_rich Low_complexity Low_complexity 1 37 0 5 1015 35 24 0 0 chr1 56455701 56455743 -140739689 + AT_rich Low_complexity Low_complexity 1 42 0 5 1015 3928 32 0 0 chr1 56457120 56457582 -140737850 + L1Md_T LINE L1 6121 6582 0 5 1015 181 152 0 29 chr1 56458148 56458182 -140737250 - L2c LINE L2 -14 3373 3341 5 1015 27 0 0 0 chr1 56458759 56458786 -140736646 + AT_rich Low_complexity Low_complexity 1 27 0 5 1015 252 0 0 0 chr1 56460034 56460062 -140735370 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 1015 189 278 0 0 chr1 56460789 56460843 -140734589 - MIRc SINE MIR -17 251 198 5 1015 578 308 0 40 chr1 56462092 56462244 -140733188 + RSINE1 SINE B4 3 148 -17 5 1015 207 69 0 0 chr1 56462266 56462295 -140733137 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 5 1015 273 29 0 0 chr1 56462987 56463021 -140732411 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1015 223 296 14 0 chr1 56463026 56463097 -140732335 + CT-rich Low_complexity Low_complexity 1 72 0 5 1015 345 145 0 0 chr1 56463226 56463288 -140732144 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1015 378 0 0 0 chr1 56463288 56463330 -140732102 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1015 483 95 0 86 chr1 56463520 56463601 -140731831 + ORR1A4 LTR MaLR 256 329 0 5 1015 238 378 50 8 chr1 56464370 56464490 -140730942 - MER63D DNA AcHobo -663 398 274 5 1015 318 277 159 20 chr1 56464680 56464831 -140730601 - HAL1 LINE L1 -643 1864 1693 5 1015 23 0 0 0 chr1 56465591 56465614 -140729818 + AT_rich Low_complexity Low_complexity 1 23 0 5 1015 238 293 80 0 chr1 56465881 56465956 -140729476 + ID4_ SINE ID 2 82 -1 5 1015 452 237 104 22 chr1 56465952 56466086 -140729346 + MER58B DNA MER1_type 152 296 -45 5 1015 407 155 0 12 chr1 56467386 56467471 -140727961 + CT-rich Low_complexity Low_complexity 3 86 0 5 1015 283 354 72 86 chr1 56468465 56468743 -140726689 + Tigger12c DNA MER2_type 106 379 -355 5 1015 348 24 0 0 chr1 56469210 56469251 -140726181 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1015 297 0 0 0 chr1 56470392 56470425 -140725007 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1015 6967 42 9 5 chr1 56470569 56471430 -140724002 - L1Md_F2 LINE L1 -14 6568 5704 6 1015 3589 60 0 4 chr1 56471431 56471886 -140723546 + L1Md_F2 LINE L1 5257 5709 -174 6 1015 418 354 75 61 chr1 56472735 56473441 -140721991 + L1M5 LINE L1 4642 5346 -800 6 1015 26 30 0 0 chr1 56473795 56473828 -140721604 + AT_rich Low_complexity Low_complexity 1 33 0 6 1015 305 272 61 53 chr1 56474163 56474218 -140721214 + MT2B2 LTR ERVL 108 163 -421 6 1015 476 239 83 0 chr1 56474218 56474327 -140721105 + B1_Mur1 SINE Alu 1 118 -31 6 1015 198 71 0 0 chr1 56474342 56474370 -140721062 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1015 1670 46 14 0 chr1 56474691 56474909 -140720523 + L1Md_A LINE L1 6362 6582 0 6 1015 1453 152 121 0 chr1 56474923 56475187 -140720245 + L1_Mur2 LINE L1 5171 5466 -411 6 1015 3508 136 31 7 chr1 56475187 56475774 -140719658 + Lx2B LINE L1 6396 6996 -4 6 1015 23 78 0 0 chr1 56475782 56475833 -140719599 + AT_rich Low_complexity Low_complexity 1 51 0 6 1015 648 272 29 11 chr1 56475875 56476050 -140719382 - B3A SINE B2 -17 181 4 6 1015 426 262 0 73 chr1 56476762 56476898 -140718534 + B4 SINE B4 2 127 -165 6 1015 189 0 0 0 chr1 56477030 56477051 -140718381 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1015 284 169 13 0 chr1 56477330 56477407 -140718025 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 6 1015 2378 202 40 6 chr1 56479811 56480290 -140715142 + RLTR16 LTR ERVK 11 505 0 6 1015 1140 272 89 14 chr1 56480404 56480751 -140714681 - MTE2b LTR MaLR -6 373 1 6 1015 330 324 131 12 chr1 56480767 56481011 -140714421 - Kanga11a DNA Tc2 -696 274 2 6 1015 1108 90 0 22 chr1 56481350 56481532 -140713900 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 6 1015 769 292 15 5 chr1 56481550 56481753 -140713679 - B3 SINE B2 -10 206 2 6 1015 356 218 111 30 chr1 56481941 56482143 -140713289 + Lx9 LINE L1 7519 7631 -13 6 1015 3986 200 90 18 chr1 56482772 56483657 -140711775 - Lx4B LINE L1 -7 7051 6103 6 1015 266 365 93 0 chr1 56483821 56483928 -140711504 + ORR1E LTR MaLR 20 136 -223 6 1015 296 0 51 0 chr1 56484527 56484566 -140710866 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 1015 214 296 0 0 chr1 56485972 56486026 -140709406 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 6 1015 209 394 72 24 chr1 56486616 56486864 -140708568 - L2c LINE L2 -73 3302 3069 6 1015 476 305 19 62 chr1 56486916 56487077 -140708355 - RSINE1 SINE B4 -9 156 3 6 1015 2786 79 39 19 chr1 56487883 56488294 -140707138 - BGLII LTR ERVK -2 419 1 6 1015 3015 209 57 45 chr1 56488295 56489201 -140706231 - RMER3D-int LTR ERVK -1 2841 1925 6 1015 2706 182 83 63 chr1 56489220 56489872 -140705560 - RMER3D-int LTR ERVK -1163 1679 1015 6 1015 807 235 27 21 chr1 56489947 56490134 -140705298 - Lx9 LINE L1 -1151 6493 6306 6 1015 337 209 18 45 chr1 56490165 56490275 -140705157 - Lx9 LINE L1 -1399 6245 6139 6 1015 500 263 85 11 chr1 56490296 56490473 -140704959 + Charlie1a DNA MER1_type 681 870 -585 6 1015 250 194 0 53 chr1 56490492 56490568 -140704864 - Lx9 LINE L1 -4 7640 7569 6 1015 257 167 19 0 chr1 56490576 56490630 -140704802 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1015 30 0 0 0 chr1 56491123 56491153 -140704279 + AT_rich Low_complexity Low_complexity 1 30 0 6 1015 1431 71 0 5 chr1 56491158 56491356 -140704076 - L1Md_F3 LINE L1 -12 6572 6376 6 1016 243 248 0 110 chr1 56492606 56492724 -140702708 + MamRep4096 DNA hAT? 61 165 -261 6 1016 198 71 0 0 chr1 56492818 56492846 -140702586 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1016 552 30 0 0 chr1 56492846 56492911 -140702521 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1016 323 357 76 29 chr1 56493025 56493302 -140702130 + MLT1L LTR MaLR 183 472 -138 6 1016 357 313 45 25 chr1 56495606 56495765 -140699667 - B3A SINE B2 -34 182 28 6 1016 183 129 0 0 chr1 56496911 56496942 -140698490 + (GAA)n Simple_repeat Simple_repeat 3 33 0 6 1016 355 366 67 47 chr1 56497859 56498200 -140697232 + L1M5 LINE L1 5454 5801 -323 6 1016 495 48 0 0 chr1 56498675 56498737 -140696695 + (CATA)n Simple_repeat Simple_repeat 2 63 0 6 1016 396 0 0 0 chr1 56499279 56499323 -140696109 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1016 934 285 89 16 chr1 56499685 56499999 -140695433 + MTD LTR MaLR 6 342 -77 6 1016 326 206 27 0 chr1 56500000 56500073 -140695359 + MTD LTR MaLR 345 419 0 1 1016 6458 254 52 22 chr1 56500187 56500452 -140694980 - Lx6 LINE L1 -27 7433 7157 2 1016 1072 202 130 72 chr1 56500452 56500798 -140694634 + ORR1B2 LTR MaLR 2 367 0 3 1016 6458 220 58 15 chr1 56500798 56502809 -140692623 - Lx6 LINE L1 -304 7156 5056 2 1016 12597 166 45 68 chr1 56502814 56503408 -140692024 - Lx6 LINE L1 -1676 4204 3695 2 1016 1116 75 7 0 chr1 56503408 56503554 -140691878 - B1_Mus2 SINE Alu 0 147 1 4 1016 12597 166 45 68 chr1 56503554 56504048 -140691384 - Lx6 LINE L1 -2186 3694 3236 2 1016 453 19 0 0 chr1 56504048 56504102 -140691330 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1016 12597 166 45 68 chr1 56504102 56505228 -140690204 - Lx6 LINE L1 -2645 3235 2080 2 1016 423 0 0 0 chr1 56505228 56505275 -140690157 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1016 12597 178 61 38 chr1 56505275 56506886 -140688546 - Lx6 LINE L1 -3801 2079 385 2 1016 1029 64 41 28 chr1 56507013 56507158 -140688274 + B1_Mus1 SINE Alu 2 148 0 7 1016 864 311 105 33 chr1 56507161 56507580 -140687852 + Lx8 LINE L1 7018 7466 -7 8 1016 5828 35 0 0 chr1 56508422 56509110 -140686322 + L1Md_T LINE L1 5893 6580 -2 9 1016 22 56 0 0 chr1 56509797 56509833 -140685599 + AT_rich Low_complexity Low_complexity 1 36 0 1 1016 203 367 12 12 chr1 56509891 56509971 -140685461 - L2a LINE L2 -5 3421 3342 1 1016 309 247 0 13 chr1 56510364 56510438 -140684994 - ID4_ SINE ID -5 78 10 1 1016 210 91 0 0 chr1 56512252 56512285 -140683147 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1016 298 45 0 0 chr1 56512328 56512377 -140683055 - L1Md_F2 LINE L1 -4 6578 6529 1 1016 932 93 16 0 chr1 56512604 56512733 -140682699 + B1_Mur4 SINE Alu 1 131 -19 1 1016 321 26 0 0 chr1 56513212 56513250 -140682182 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1016 342 325 190 8 chr1 56513256 56513377 -140682055 - RSINE1 SINE B4 -20 145 3 1 1016 444 37 0 0 chr1 56513409 56513463 -140681969 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1016 3121 63 0 2 chr1 56513795 56514192 -140681240 - L1_Mus1 LINE L1 -1 6566 6171 1 1016 198 254 94 16 chr1 56514217 56514281 -140681151 + MIRb SINE MIR 116 184 -84 2 1016 632 174 8 16 chr1 56514550 56514673 -140680759 + URR1A DNA MER1_type 67 188 -38 2 1016 434 290 7 7 chr1 56514706 56514845 -140680587 + Lx9 LINE L1 7055 7193 -451 2 1016 526 226 475 15 chr1 56514887 56515083 -140680349 + ORR1D2 LTR MaLR 80 365 -5 2 1016 816 11 0 0 chr1 56515258 56515351 -140680081 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1016 37816 31 0 0 chr1 56515475 56521689 -140673743 - L1Md_T LINE L1 0 6585 275 2 1016 190 0 67 0 chr1 56521759 56521789 -140673643 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1016 288 353 16 16 chr1 56522449 56522570 -140672862 + MamSINE1 SINE tRNA 18 138 -152 2 1016 378 0 0 0 chr1 56522793 56522835 -140672597 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1016 21 0 0 0 chr1 56523242 56523263 -140672169 + AT_rich Low_complexity Low_complexity 1 21 0 2 1016 548 230 142 18 chr1 56523461 56523762 -140671670 - ORR1D1 LTR MaLR -2 372 1 3 1016 297 197 0 0 chr1 56526178 56526239 -140669193 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1016 231 152 0 0 chr1 56526277 56526323 -140669109 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 3 1016 23 33 0 0 chr1 56526412 56526442 -140668990 + AT_rich Low_complexity Low_complexity 1 30 0 3 1016 557 302 47 49 chr1 56526752 56527260 -140668172 - L1M5 LINE L1 -2896 3250 2744 3 1016 1117 76 0 0 chr1 56527844 56527988 -140667444 - B1_Mm SINE Alu -1 146 3 3 1016 225 182 0 0 chr1 56528326 56528381 -140667051 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1016 1044 24 0 0 chr1 56528400 56528523 -140666909 + (GGAGA)n Simple_repeat Simple_repeat 3 125 0 3 1016 11962 186 257 25 chr1 56529780 56533879 -140661553 + L1_Mur2 LINE L1 888 5872 -5 3 1016 600 295 78 101 chr1 56534133 56534480 -140660952 + LTR41 LTR ERVL 424 762 -6 3 1016 720 119 0 0 chr1 56534566 56534684 -140660748 + (CA)n Simple_repeat Simple_repeat 2 119 0 4 1016 25 0 0 0 chr1 56535453 56535478 -140659954 + AT_rich Low_complexity Low_complexity 1 25 0 4 1016 561 88 0 0 chr1 56538342 56538422 -140657010 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1016 3907 46 0 2 chr1 56539012 56539490 -140655942 + L1Md_F2 LINE L1 6100 6576 -6 4 1016 23 0 0 0 chr1 56539492 56539515 -140655917 + AT_rich Low_complexity Low_complexity 1 23 0 4 1016 278 341 0 11 chr1 56539641 56539730 -140655702 + MTEb LTR MaLR 287 374 -5 4 1016 295 311 134 32 chr1 56539934 56540120 -140655312 + MLT1G1 LTR MaLR 375 579 0 4 1016 952 261 0 5 chr1 56541268 56541472 -140653960 - B3 SINE B2 -2 214 12 4 1016 465 228 165 0 chr1 56541496 56541623 -140653809 - B1_Mur2 SINE Alu -1 148 1 4 1016 315 363 76 25 chr1 56542207 56542405 -140653027 - MER3 DNA MER1_type -1 208 1 4 1016 321 26 0 0 chr1 56543918 56543956 -140651476 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1016 266 232 61 0 chr1 56545174 56545256 -140650176 + ORR1D1 LTR MaLR 11 97 -277 5 1016 236 286 8 25 chr1 56545411 56545533 -140649899 + GA-rich Low_complexity Low_complexity 1 120 0 5 1016 940 247 108 18 chr1 56545854 56546159 -140649273 + ORR1D1 LTR MaLR 54 368 -6 5 1016 594 326 10 10 chr1 56546174 56546372 -140649060 - B3A SINE B2 0 198 1 5 1016 1395 234 66 30 chr1 56546961 56547296 -140648136 - ORR1D1 LTR MaLR -2 372 26 5 1016 1190 288 19 28 chr1 56547316 56547634 -140647798 - ORR1E LTR MaLR -40 319 5 5 1016 3448 277 22 115 chr1 56547653 56549041 -140646391 - ORR1E-int LTR MaLR -21 1349 91 5 1016 31710 84 9 53 chr1 56549045 56555514 -140639918 - L1Md_F2 LINE L1 -2 6580 417 5 1016 334 301 9 19 chr1 56555514 56555619 -140639813 - ORR1E-int LTR MaLR -1266 104 1 5 1016 453 217 28 96 chr1 56555619 56555797 -140639635 - ORR1E LTR MaLR 0 370 205 5 1016 297 261 7 2 chr1 56556102 56556172 -140639260 + Charlie1a DNA MER1_type 25 96 -1359 5 1016 276 272 74 0 chr1 56556216 56556297 -140639135 + Charlie1a DNA MER1_type 924 1010 -445 5 1016 1113 35 21 0 chr1 56556335 56556476 -140638956 + B1_Mm SINE Alu 2 145 -2 5 1016 239 0 0 31 chr1 56556476 56556508 -140638924 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1016 333 350 48 0 chr1 56556538 56556641 -140638791 - MLT1A0 LTR MaLR -54 311 204 6 1016 297 311 49 70 chr1 56556811 56556953 -140638479 - ORR1E LTR MaLR -240 139 1 5 1016 241 350 41 0 chr1 56557144 56557241 -140638191 + MLT1F1 LTR MaLR 20 120 -449 6 1016 1005 149 0 0 chr1 56558219 56558394 -140637038 + (TC)n Simple_repeat Simple_repeat 2 176 0 6 1016 263 316 52 17 chr1 56559534 56559650 -140635782 - PB1 SINE Alu -7 120 1 6 1016 266 271 46 46 chr1 56560005 56560027 -140635405 + L1M4b LINE L1 1268 1290 -6044 6 1016 747 112 0 0 chr1 56560027 56560152 -140635280 + (TA)n Simple_repeat Simple_repeat 1 125 0 6 1016 266 271 46 46 chr1 56560152 56560280 -140635152 + L1M4b LINE L1 1291 1417 -5917 6 1016 324 0 0 0 chr1 56560645 56560681 -140634751 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1016 1209 253 18 39 chr1 56560708 56561045 -140634387 - Lx6 LINE L1 -10 7450 7121 6 1016 348 295 78 12 chr1 56561127 56561371 -140634061 + L1M4b LINE L1 3771 4030 -2976 6 1016 271 385 0 9 chr1 56561410 56561515 -140633917 - PB1D10 SINE Alu -1 116 13 6 1016 555 16 0 0 chr1 56561663 56561727 -140633705 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1016 252 213 0 0 chr1 56561788 56561835 -140633597 - Lx7 LINE L1 -384 7312 7266 7 1016 358 289 30 39 chr1 56561834 56562068 -140633364 + L1M4b LINE L1 4068 4299 -2707 6 1016 254 49 24 0 chr1 56562199 56562240 -140633192 + B1_Mus2 SINE Alu 106 147 0 7 1016 828 162 0 0 chr1 56562254 56562402 -140633030 + A-rich Low_complexity Low_complexity 3 150 0 7 1016 448 326 81 4 chr1 56562542 56562776 -140632656 + L1M4b LINE L1 5033 5284 -1722 6 1016 583 282 81 46 chr1 56562816 56563749 -140631683 + L1M4b LINE L1 5465 6509 -525 6 1016 333 301 92 35 chr1 56564002 56564143 -140631289 + RSINE1 SINE B4 4 152 -13 7 1016 297 0 0 0 chr1 56564145 56564178 -140631254 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1016 504 247 174 40 chr1 56564375 56564628 -140630804 - RMER15 LTR ERVL 0 575 289 7 1016 248 360 39 35 chr1 56564875 56565105 -140630327 + L1MC LINE L1 2368 2598 -3548 7 1016 454 321 5 136 chr1 56565178 56565369 -140630063 - B3A SINE B2 -6 192 27 7 1016 678 287 38 30 chr1 56565423 56565660 -140629772 - MLT2B1 LTR ERVL -2 565 327 7 1016 321 267 107 20 chr1 56565677 56565826 -140629606 + L1MC4a LINE L1 7550 7711 -171 7 1016 1083 139 0 0 chr1 56565849 56566029 -140629403 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1016 331 269 68 36 chr1 56566496 56566700 -140628732 + L1MC LINE L1 4704 4914 -1232 7 1016 5479 36 3 15 chr1 56566709 56567387 -140628045 + L1Md_F3 LINE L1 5914 6583 -1 8 1016 1024 307 22 0 chr1 56567764 56568034 -140627398 - B4A SINE B4 -9 283 8 8 1016 387 0 0 0 chr1 56568753 56568796 -140626636 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1016 531 0 0 0 chr1 56568796 56568854 -140626578 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1016 281 288 0 0 chr1 56570666 56570739 -140624693 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 1016 299 370 79 74 chr1 56572044 56572260 -140623172 + LTR16E2 LTR ERVL 7 223 -345 8 1016 270 370 19 0 chr1 56572707 56572815 -140622617 + ERVL-E-int LTR ERVL 3110 3219 -2448 8 1016 183 139 0 0 chr1 56575104 56575140 -140620292 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 8 1016 2411 167 30 52 chr1 56575538 56576112 -140619320 + RLTR31_Mm LTR ERVK 1 561 0 8 1016 405 0 0 0 chr1 56576556 56576601 -140618831 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1016 1449 173 26 23 chr1 56576601 56576859 -140618573 + Lx4B LINE L1 6765 7026 -32 9 1016 256 339 31 55 chr1 56576879 56577007 -140618425 - MTEa LTR MaLR 0 379 255 9 1016 612 319 16 16 chr1 56577203 56577521 -140617911 - L1M4 LINE L1 -1111 5035 4718 9 1016 21 57 0 0 chr1 56577550 56577585 -140617847 + AT_rich Low_complexity Low_complexity 1 35 0 9 1016 23 54 0 0 chr1 56577785 56577822 -140617610 + AT_rich Low_complexity Low_complexity 1 37 0 9 1016 4083 54 0 6 chr1 56577909 56578430 -140617002 - L1Md_F2 LINE L1 0 6582 6065 9 1016 558 327 81 34 chr1 56579803 56580037 -140615395 + MLT2B1 LTR ERVL 1 245 -275 9 1016 198 289 48 67 chr1 56580399 56580503 -140614929 + L2a LINE L2 2664 2765 -654 9 1016 249 291 91 33 chr1 56580887 56581008 -140614424 + L2a LINE L2 3292 3419 -7 9 1016 504 231 27 27 chr1 56581755 56581866 -140613566 - PB1D10 SINE Alu 0 117 7 9 1016 201 196 0 19 chr1 56582272 56582324 -140613108 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 1016 21 36 0 0 chr1 56582842 56582870 -140612562 + AT_rich Low_complexity Low_complexity 1 28 0 1 1016 7955 67 0 0 chr1 56583420 56584635 -140610797 + L1_Mus1 LINE L1 5353 6566 -1 1 1016 21 0 0 0 chr1 56584635 56584656 -140610776 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 408 20 0 0 chr1 56585322 56585371 -140610061 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1016 4630 10 0 0 chr1 56585563 56586083 -140609349 - L1Md_A LINE L1 0 6582 6063 1 1016 2078 149 9 6 chr1 56586410 56586748 -140608684 - Lx4A LINE L1 -17 7041 6703 1 1016 1178 74 0 0 chr1 56586952 56587100 -140608332 + B1_Mus1 SINE Alu 1 148 0 1 1016 330 129 0 0 chr1 56587104 56587166 -140608266 + (A)n Simple_repeat Simple_repeat 1 62 0 1 1016 37 69 0 0 chr1 56587426 56587498 -140607934 + AT_rich Low_complexity Low_complexity 1 72 0 1 1016 23 33 0 0 chr1 56587551 56587581 -140607851 + AT_rich Low_complexity Low_complexity 1 30 0 1 1016 231 114 0 0 chr1 56589143 56589178 -140606254 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1016 618 134 0 0 chr1 56589180 56589292 -140606140 - Lx3C LINE L1 -2 6974 6863 1 1016 379 228 139 0 chr1 56590624 56590725 -140604707 - RSINE1 SINE B4 -45 120 6 1 1016 7800 75 1 1 chr1 56590754 56592058 -140603374 - L1_Mus1 LINE L1 0 6567 5263 1 1016 25 31 0 0 chr1 56592931 56592963 -140602469 + AT_rich Low_complexity Low_complexity 1 32 0 1 1016 182 274 214 0 chr1 56593140 56593187 -140602245 + MIR SINE MIR 73 119 -143 1 1016 264 59 0 0 chr1 56593187 56593221 -140602211 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1016 182 274 214 0 chr1 56593221 56593257 -140602175 + MIR SINE MIR 120 173 -89 1 1016 999 103 7 14 chr1 56593942 56594090 -140601342 + B1_Mm SINE Alu 1 147 0 1 1016 198 103 0 0 chr1 56594384 56594413 -140601019 + (CCCCCT)n Simple_repeat Simple_repeat 1 29 0 1 1016 2189 121 0 0 chr1 56594524 56594846 -140600586 - L1_Mus4 LINE L1 -3 6633 6312 1 1016 2153 63 7 0 chr1 56594846 56595117 -140600315 + L1_Mus4 LINE L1 5929 6201 -435 1 1016 224 383 81 49 chr1 56595120 56595367 -140600065 + L2b LINE L2 3107 3361 -14 1 1016 1020 54 17 35 chr1 56595529 56595701 -140599731 + (TCTCCC)n Simple_repeat Simple_repeat 3 171 0 1 1016 25 0 0 0 chr1 56599411 56599436 -140595996 + AT_rich Low_complexity Low_complexity 1 25 0 1 1016 1027 45 13 19 chr1 56599475 56599632 -140595800 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 1016 732 245 18 18 chr1 56599634 56599800 -140595632 - B3A SINE B2 -30 168 3 1 1016 645 254 95 5 chr1 56599981 56600171 -140595261 + B3 SINE B2 2 208 -8 1 1016 333 335 149 0 chr1 56600278 56600439 -140594993 + B4A SINE B4 108 292 0 1 1016 302 115 19 0 chr1 56600463 56600515 -140594917 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1016 343 289 24 53 chr1 56600896 56601039 -140594393 - MIRb SINE MIR -91 177 32 1 1016 321 367 13 52 chr1 56601384 56601539 -140593893 + MIRb SINE MIR 34 182 -86 1 1016 886 182 33 16 chr1 56601550 56601734 -140593698 - Zaphod DNA Tip100 -26 4005 3819 1 1016 267 305 73 0 chr1 56601855 56601867 -140593565 - ID_B1 SINE B4 -128 96 9 1 1016 313 257 29 0 chr1 56601867 56601937 -140593495 - ID2 SINE ID -3 80 9 1 1016 403 170 43 0 chr1 56601976 56602090 -140593342 - URR1B DNA MER1_type -1 224 59 1 1016 1091 282 136 39 chr1 56602157 56602741 -140592691 - L1MA9 LINE L1 -310 6002 5357 1 1016 3276 144 118 3 chr1 56602741 56603359 -140592073 - RMER6C LTR ERVK -1 689 1 1 1016 1091 289 109 24 chr1 56603359 56603824 -140591608 - L1MA9 LINE L1 -956 5356 4843 1 1016 1158 94 54 59 chr1 56603824 56604028 -140591404 + L1_Mus2 LINE L1 6364 6566 0 1 1016 40 49 0 0 chr1 56604670 56604731 -140590701 + AT_rich Low_complexity Low_complexity 1 61 0 1 1016 321 26 0 0 chr1 56606311 56606349 -140589083 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1016 485 326 39 58 chr1 56606525 56606730 -140588702 - Tigger5 DNA MER2_type -2196 210 10 1 1016 1565 303 74 16 chr1 56607196 56607815 -140587617 - Lx8 LINE L1 -26 7447 6764 1 1016 1301 314 49 8 chr1 56607847 56608316 -140587116 - Lx8 LINE L1 -838 6635 6148 1 1016 2801 275 39 13 chr1 56608500 56609321 -140586111 - Lx8 LINE L1 -157 7316 6475 1 1016 1284 292 14 14 chr1 56609326 56609694 -140585738 - Lx7 LINE L1 -589 7107 6740 1 1016 960 269 111 0 chr1 56609836 56610089 -140585343 - MTD LTR MaLR -44 375 95 1 1016 451 284 34 57 chr1 56610089 56610275 -140585157 + Lx5 LINE L1 6857 7025 -25 1 1016 192 77 0 0 chr1 56610275 56610301 -140585131 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 1016 442 299 49 35 chr1 56612641 56612783 -140582649 - MLT1J1 LTR MaLR -247 197 54 1 1016 357 121 17 0 chr1 56613155 56613213 -140582219 + HAL1-3A_ME LINE L1 1969 2027 -831 1 1016 504 194 0 0 chr1 56613215 56613354 -140582078 + (CA)n Simple_repeat Simple_repeat 1 139 0 1 1016 340 250 64 104 chr1 56613362 56613487 -140581945 - B1F2 SINE Alu 0 120 1 1 1016 24 0 0 0 chr1 56614486 56614510 -140580922 + AT_rich Low_complexity Low_complexity 1 24 0 1 1016 252 378 0 0 chr1 56614550 56614677 -140580755 + ERVL-E-int LTR ERVL 1022 1148 -4519 1 1016 207 0 0 0 chr1 56614928 56614951 -140580481 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1016 327 326 14 14 chr1 56615561 56615704 -140579728 - L1M3e LINE L1 -5225 1805 1663 1 1016 894 271 191 14 chr1 56615707 56616063 -140579369 - MTD LTR MaLR 0 419 1 1 1016 649 289 59 84 chr1 56616148 56616386 -140579046 - MTC-int LTR MaLR -285 973 742 1 1016 728 361 129 39 chr1 56616429 56617327 -140578105 - L1M3e LINE L1 -5523 1507 529 1 1016 286 367 23 0 chr1 56617471 56617599 -140577833 - L1M3e LINE L1 -6320 710 580 1 1016 666 37 0 0 chr1 56618153 56618234 -140577198 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1016 280 339 24 16 chr1 56618282 56618405 -140577027 - RSINE1 SINE B4 -36 129 6 1 1016 4376 10 0 0 chr1 56618576 56619058 -140576374 - LTRIS_Mm LTR ERV1 0 482 1 1 1016 242 27 81 0 chr1 56619142 56619179 -140576253 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1016 330 75 0 0 chr1 56619638 56619691 -140575741 - L1_Mus3 LINE L1 -7 6631 6579 1 1016 446 300 81 90 chr1 56619976 56620320 -140575112 + Lx8 LINE L1 7133 7473 0 1 1016 479 258 77 15 chr1 56620590 56620720 -140574712 + RSINE1 SINE B4 28 165 0 1 1016 476 73 66 55 chr1 56621054 56621151 -140574281 - PB1D9 SINE Alu 0 120 17 1 1016 684 61 0 0 chr1 56621228 56621326 -140574106 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 1016 189 0 0 0 chr1 56621340 56621361 -140574071 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1016 335 306 20 0 chr1 56621701 56621799 -140573633 - LTR85c LTR Gypsy? -13 810 711 1 1017 21 0 0 0 chr1 56623135 56623156 -140572276 + AT_rich Low_complexity Low_complexity 1 21 0 1 1017 198 207 33 33 chr1 56623821 56623881 -140571551 + MIRb SINE MIR 106 165 -103 1 1017 218 347 55 14 chr1 56624547 56624693 -140570739 - L2 LINE L2 -548 2871 2720 1 1017 1056 326 38 25 chr1 56625925 56626319 -140569113 + Tigger9b DNA MER2_type 4 402 -222 1 1017 624 116 0 0 chr1 56626359 56626454 -140568978 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1017 200 167 0 0 chr1 56626785 56626815 -140568617 + polypurine Low_complexity Low_complexity 2 31 0 1 1017 507 33 0 0 chr1 56627121 56627182 -140568250 + (GGA)n Simple_repeat Simple_repeat 3 63 0 1 1017 195 105 53 0 chr1 56627736 56627793 -140567639 + T-rich Low_complexity Low_complexity 2 61 0 1 1017 276 53 0 0 chr1 56628137 56628175 -140567257 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1017 728 71 10 0 chr1 56628176 56628274 -140567158 - B1_Mm SINE Alu 0 147 49 1 1017 910 246 134 14 chr1 56628285 56628561 -140566871 - MTD LTR MaLR -92 327 19 1 1017 24 67 0 0 chr1 56630240 56630285 -140565147 + AT_rich Low_complexity Low_complexity 1 45 0 1 1017 275 287 43 0 chr1 56630309 56630424 -140565008 - L1MA6 LINE L1 -61 6239 6120 1 1017 3018 264 119 46 chr1 56630533 56632518 -140562914 - L1M2 LINE L1 -942 5201 3073 1 1017 371 299 208 35 chr1 56632527 56632811 -140562621 - L1M2 LINE L1 -3226 2917 2585 1 1017 234 250 88 9 chr1 56632814 56632927 -140562505 - L1M2 LINE L1 -3533 2610 2489 1 1017 296 276 87 41 chr1 56633030 56633272 -140562160 - L1M2 LINE L1 -3652 2491 2239 1 1017 22 0 0 0 chr1 56634440 56634462 -140560970 + AT_rich Low_complexity Low_complexity 1 22 0 1 1017 980 235 29 14 chr1 56634999 56635206 -140560226 + B3 SINE B2 1 210 -6 1 1017 1702 229 51 39 chr1 56635844 56636257 -140559175 - MTD LTR MaLR -1 418 1 1 1017 757 322 72 19 chr1 56636783 56637035 -140558397 + B4 SINE B4 3 271 -21 1 1017 428 51 17 0 chr1 56637035 56637094 -140558338 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1017 468 0 0 0 chr1 56637094 56637145 -140558287 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1017 180 77 0 0 chr1 56637160 56637186 -140558246 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1017 212 59 0 29 chr1 56637426 56637461 -140557971 + (CAAAAA)n Simple_repeat Simple_repeat 6 39 0 1 1017 236 240 26 26 chr1 56637902 56637979 -140557453 + B1_Mur2 SINE Alu 73 149 0 1 1017 664 60 30 10 chr1 56637980 56638081 -140557351 + (GGAGAA)n Simple_repeat Simple_repeat 5 107 0 1 1017 265 198 8 67 chr1 56638902 56639021 -140556411 + A-rich Low_complexity Low_complexity 1 112 0 1 1017 3914 165 39 11 chr1 56639104 56640098 -140555334 + Lx7 LINE L1 5101 6124 -1572 1 1017 3388 168 96 82 chr1 56640110 56640390 -140555042 + RMER19B LTR ERVK 4 228 -674 1 1017 333 0 0 0 chr1 56640390 56640427 -140555005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1017 3388 168 96 82 chr1 56640427 56640905 -140554527 + RMER19B LTR ERVK 229 773 -129 1 1017 387 0 0 0 chr1 56640922 56640965 -140554467 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1017 5158 208 98 37 chr1 56641009 56641804 -140553628 + Lx7 LINE L1 6257 7167 -529 1 1017 477 0 0 0 chr1 56641804 56641857 -140553575 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1017 5158 208 98 37 chr1 56641857 56642412 -140553020 + Lx7 LINE L1 7168 7688 -8 1 1017 266 50 0 24 chr1 56642464 56642505 -140552927 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1017 195 129 0 0 chr1 56643849 56643880 -140551552 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 2 1017 253 276 13 0 chr1 56643881 56643957 -140551475 + CT-rich Low_complexity Low_complexity 2 78 0 2 1017 261 0 0 0 chr1 56643961 56643990 -140551442 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 2 1017 235 264 0 0 chr1 56645145 56645198 -140550234 - Lx5 LINE L1 -838 6212 6160 2 1017 2027 173 21 28 chr1 56645195 56645617 -140549815 - Lx5 LINE L1 -1002 6048 5630 2 1017 476 214 0 59 chr1 56645614 56645689 -140549743 + Lx5 LINE L1 5526 5599 -278 2 1017 2249 209 19 135 chr1 56645689 56646380 -140549052 + RMER19C LTR ERVK 1 611 0 2 1017 476 214 0 59 chr1 56646380 56646423 -140549009 + L1_Mur2 LINE L1 5600 5637 -240 2 1017 320 341 88 7 chr1 56646433 56646569 -140548863 - ORR1E LTR MaLR -212 147 1 2 1017 248 338 58 42 chr1 56646582 56646798 -140548634 + MTEa LTR MaLR 142 377 -2 2 1017 360 0 0 0 chr1 56646926 56646966 -140548466 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 2 1017 565 142 9 9 chr1 56647034 56647148 -140548284 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1017 220 155 51 17 chr1 56647419 56647478 -140547954 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1017 3486 27 0 0 chr1 56648567 56648972 -140546460 + L1Md_A LINE L1 6176 6580 -2 2 1017 26 93 0 0 chr1 56650598 56650673 -140544759 + AT_rich Low_complexity Low_complexity 1 75 0 2 1017 2200 159 19 0 chr1 56651461 56651832 -140543600 + ORR1C1 LTR MaLR 1 378 0 2 1017 1867 131 6 37 chr1 56651882 56652185 -140543247 + Lx3_Mus LINE L1 6687 6988 -21 2 1017 312 83 0 0 chr1 56652185 56652233 -140543199 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 2 1017 1867 131 6 37 chr1 56652233 56652255 -140543177 + Lx3_Mus LINE L1 6989 7002 -7 2 1017 316 374 46 23 chr1 56652715 56652934 -140542498 - L1MEf LINE L1 -3762 2384 2161 2 1017 461 335 110 21 chr1 56653374 56653829 -140541603 - L1MEf LINE L1 -850 1657 1107 2 1017 359 343 93 13 chr1 56653987 56654223 -140541209 - L1ME3B LINE L1 -175 6065 5811 2 1017 543 303 100 27 chr1 56654441 56654702 -140540730 - B4 SINE B4 -12 280 1 2 1017 181 268 0 0 chr1 56655028 56655069 -140540363 + MIR SINE MIR 81 121 -141 2 1017 287 349 18 9 chr1 56655208 56655318 -140540114 + ID_B1 SINE B4 86 196 -28 2 1017 21 0 0 0 chr1 56655448 56655469 -140539963 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 22 0 0 0 chr1 56656599 56656621 -140538811 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 27 0 0 0 chr1 56657037 56657064 -140538368 + AT_rich Low_complexity Low_complexity 1 27 0 2 1017 207 0 0 0 chr1 56657299 56657322 -140538110 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2 1017 432 0 0 0 chr1 56657708 56657756 -140537676 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1017 2252 130 136 24 chr1 56657776 56658195 -140537237 - RMER4A LTR ERVK 0 466 1 2 1017 226 342 82 0 chr1 56659170 56659243 -140536189 - ID4 SINE ID -3 80 2 2 1017 417 184 61 0 chr1 56659282 56659396 -140536036 - Lx9 LINE L1 -8 7636 7516 2 1017 342 0 0 0 chr1 56659397 56659435 -140535997 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1017 279 300 20 10 chr1 56660283 56660384 -140535048 - MER103 DNA DNA -44 122 21 2 1017 659 292 11 5 chr1 56660437 56660623 -140534809 + Kanga1 DNA Tc2 33 219 -1526 2 1017 540 0 0 0 chr1 56660718 56660778 -140534654 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1017 22 35 0 0 chr1 56660958 56660987 -140534445 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 3244 238 66 113 chr1 56662244 56663351 -140532081 + ORR1D2-int LTR MaLR 316 1370 0 2 1017 1183 244 125 3 chr1 56663353 56663666 -140531766 + ORR1D2 LTR MaLR 3 353 -17 2 1017 240 222 0 0 chr1 56663861 56663933 -140531499 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1017 984 296 98 34 chr1 56664877 56665430 -140530002 + Lx8 LINE L1 6831 7418 -55 2 1017 564 15 0 0 chr1 56665550 56665615 -140529817 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 2 1017 317 262 37 37 chr1 56665987 56666122 -140529310 + GA-rich Low_complexity Low_complexity 4 138 0 2 1017 306 400 46 0 chr1 56666691 56666821 -140528611 + MLT1A LTR MaLR 23 158 -216 2 1017 317 333 46 7 chr1 56667182 56667333 -140528099 - MER20 DNA MER1_type -18 201 45 2 1017 24 32 0 0 chr1 56668294 56668325 -140527107 + AT_rich Low_complexity Low_complexity 1 31 0 2 1017 286 222 0 31 chr1 56668811 56668876 -140526556 - B4A SINE B4 -6 286 224 2 1017 263 122 0 20 chr1 56670359 56670409 -140525023 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1017 371 253 74 0 chr1 56670409 56670504 -140524928 - PB1D10 SINE Alu -14 103 2 2 1017 1466 202 35 9 chr1 56671081 56671396 -140524036 - Lx7 LINE L1 -16 7680 7358 2 1017 235 157 55 18 chr1 56671403 56671513 -140523919 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1017 6242 209 58 48 chr1 56671602 56673703 -140521729 - Lx7 LINE L1 -333 7363 5253 2 1017 3416 99 6 14 chr1 56673714 56674208 -140521224 - Lx3A LINE L1 -1 6980 6491 2 1017 4366 88 13 8 chr1 56674208 56675081 -140520351 + Lx3A LINE L1 5337 6212 -769 2 1017 20235 171 34 14 chr1 56675078 56679747 -140515685 - Lx7 LINE L1 -618 5262 499 2 1017 351 0 0 0 chr1 56679749 56679788 -140515644 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1017 528 16 0 0 chr1 56679788 56679848 -140515584 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1017 617 245 18 70 chr1 56679854 56680025 -140515407 - RSINE1 SINE B4 0 165 4 2 1017 578 262 190 15 chr1 56680214 56680625 -140514807 + L1MD LINE L1 2697 3179 -2967 2 1017 552 295 113 15 chr1 56680892 56681281 -140514151 + L1MD LINE L1 3592 4018 -2128 2 1017 1911 202 75 45 chr1 56681289 56681756 -140513676 + RMER3D-int LTR ERVK 2355 2757 -85 2 1017 42 36 0 0 chr1 56681756 56681812 -140513620 + AT_rich Low_complexity Low_complexity 1 56 0 2 1017 397 153 152 0 chr1 56681812 56681911 -140513521 + RMER3D-int LTR ERVK 2761 2842 0 2 1017 1448 228 48 8 chr1 56681911 56682265 -140513167 + RLTR17 LTR ERVK 1 368 -324 2 1017 289 303 74 6 chr1 56683049 56683225 -140512207 - L1MD LINE L1 -2061 4085 3898 2 1017 23 78 0 0 chr1 56683236 56683287 -140512145 + AT_rich Low_complexity Low_complexity 1 51 0 2 1017 907 300 82 41 chr1 56683386 56683761 -140511671 - Lx8 LINE L1 -5 7468 7070 2 1017 2985 151 20 18 chr1 56683761 56684315 -140511117 - RLTR31B_Mm LTR ERVK -2 555 1 2 1017 907 300 82 41 chr1 56684315 56684402 -140511030 - Lx8 LINE L1 -404 7069 6987 2 1017 24 53 0 0 chr1 56685535 56685573 -140509859 + AT_rich Low_complexity Low_complexity 1 38 0 2 1017 258 262 0 0 chr1 56685644 56685705 -140509727 + L1MD LINE L1 5535 5595 -647 2 1017 23 33 0 0 chr1 56685705 56685735 -140509697 + AT_rich Low_complexity Low_complexity 1 30 0 2 1017 286 343 38 29 chr1 56685836 56685941 -140509491 + MER5A DNA MER1_type 80 185 -4 2 1017 249 83 0 0 chr1 56686099 56686135 -140509297 + (TCTCTG)n Simple_repeat Simple_repeat 6 41 0 2 1017 214 184 0 0 chr1 56686142 56686180 -140509252 + CT-rich Low_complexity Low_complexity 1 38 0 2 1017 315 0 0 0 chr1 56686180 56686215 -140509217 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1017 231 228 19 0 chr1 56688739 56688799 -140506633 + ID2 SINE ID 12 72 -11 2 1017 684 293 174 13 chr1 56689911 56690222 -140505210 - RMER5 LTR ERV1 -11 523 163 2 1017 304 343 85 28 chr1 56690857 56690998 -140504434 + B1F1 SINE Alu 1 149 0 2 1017 217 363 26 9 chr1 56691749 56691863 -140503569 - MIRc SINE MIR 0 268 153 2 1017 238 292 10 10 chr1 56692584 56692681 -140502751 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 1017 985 203 16 0 chr1 56692703 56692885 -140502547 - B3 SINE B2 -5 211 27 2 1017 36 40 0 0 chr1 56694504 56694554 -140500878 + AT_rich Low_complexity Low_complexity 1 50 0 2 1017 180 0 0 0 chr1 56694752 56694772 -140500660 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1017 397 290 51 0 chr1 56694772 56694910 -140500522 - Lx7 LINE L1 -376 7320 7176 2 1017 228 182 91 0 chr1 56694916 56694971 -140500461 - B3 SINE B2 -155 61 2 2 1017 312 27 0 0 chr1 56695292 56695329 -140500103 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1017 768 176 57 28 chr1 56695368 56695393 -140500039 - RMER6B LTR ERVK -5 456 433 2 1017 2369 164 31 7 chr1 56695393 56695841 -140499591 - RMER6B LTR ERVK -2 459 1 2 1017 768 176 57 28 chr1 56695841 56695991 -140499441 - RMER6B LTR ERVK -29 432 276 2 1017 411 280 48 18 chr1 56696781 56696948 -140498484 + Lx6 LINE L1 7288 7459 -1 2 1017 324 284 140 26 chr1 56698903 56699131 -140496301 + MLT1E1A LTR MaLR 289 542 -138 2 1017 191 298 0 0 chr1 56699826 56699873 -140495559 - L2c LINE L2 -64 3323 3277 2 1017 254 138 17 0 chr1 56700191 56700249 -140495183 + CT-rich Low_complexity Low_complexity 1 59 0 2 1017 334 255 53 0 chr1 56700890 56700984 -140494448 + B4 SINE B4 5 103 -189 2 1017 348 302 125 14 chr1 56700984 56701129 -140494303 + B3A SINE B2 7 168 -30 2 1017 306 0 0 0 chr1 56701129 56701163 -140494269 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1017 348 302 16 16 chr1 56701163 56701189 -140494243 + B3A SINE B2 169 193 -5 2 1017 678 302 88 10 chr1 56701199 56701393 -140494039 + B4 SINE B4 84 292 0 2 1017 22 0 0 0 chr1 56701721 56701743 -140493689 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 681 24 0 0 chr1 56702046 56702129 -140493303 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1017 227 220 40 0 chr1 56702964 56703014 -140492418 - B1F SINE Alu -5 144 93 2 1017 2405 100 6 0 chr1 56703346 56703685 -140491747 - L1_Mus3 LINE L1 -312 5571 5231 2 1017 7746 70 12 8 chr1 56703687 56704719 -140490713 + L1_Mus3 LINE L1 5587 6622 -16 2 1017 302 0 26 0 chr1 56704790 56704828 -140490604 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1017 308 205 35 18 chr1 56705735 56705849 -140489583 - Lx9 LINE L1 -6 7638 7523 2 1017 198 103 0 0 chr1 56705850 56705879 -140489553 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1017 1919 235 45 4 chr1 56705879 56706349 -140489083 - Lx9 LINE L1 -175 7469 6981 2 1017 604 75 0 0 chr1 56706349 56706453 -140488979 + L1_Mus1 LINE L1 6463 6567 0 2 1017 942 274 121 29 chr1 56706660 56707141 -140488291 - L1MD1 LINE L1 -1 6241 5717 2 1017 1261 311 71 32 chr1 56707152 56708500 -140486932 - L1MD1 LINE L1 -2016 4130 2702 2 1017 258 221 46 128 chr1 56709430 56709539 -140485893 - MTEa LTR MaLR -2 377 278 2 1017 263 243 0 63 chr1 56709812 56709891 -140485541 - MTEb LTR MaLR -305 74 1 2 1017 21 36 0 0 chr1 56710047 56710075 -140485357 + AT_rich Low_complexity Low_complexity 1 28 0 2 1017 266 256 281 33 chr1 56710356 56710477 -140484955 + RSINE1 SINE B4 5 155 -10 2 1017 601 277 13 47 chr1 56711520 56711755 -140483677 - Lx9 LINE L1 -157 7487 7261 2 1017 1210 289 42 70 chr1 56711823 56712058 -140483374 - L1_Mur3 LINE L1 -582 5709 5446 3 1017 3462 83 19 0 chr1 56712058 56712529 -140482903 + L1_Mus2 LINE L1 6087 6566 0 3 1017 1210 296 103 70 chr1 56712529 56713344 -140482088 - L1_Mur3 LINE L1 -435 5445 4594 3 1017 338 0 0 81 chr1 56713344 56713406 -140482026 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 3 1017 1210 296 103 70 chr1 56713406 56713622 -140481810 - L1_Mur3 LINE L1 -1287 4593 4385 3 1017 198 0 0 0 chr1 56713622 56713644 -140481788 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 3 1017 1210 296 103 70 chr1 56713644 56713919 -140481513 - L1_Mur3 LINE L1 -1496 4384 4091 3 1017 328 266 81 34 chr1 56714185 56714485 -140480947 - L1ME2 LINE L1 -93 6069 5744 3 1017 504 0 0 0 chr1 56715654 56715710 -140479722 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1017 872 69 8 0 chr1 56715905 56716036 -140479396 + L1_Mus4 LINE L1 6494 6625 -11 3 1017 1199 94 0 6 chr1 56716050 56716231 -140479201 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1017 1057 181 142 71 chr1 56717453 56717763 -140477669 - IAPEY3_LTR LTR ERVK 0 332 1 3 1017 228 320 26 0 chr1 56718236 56718314 -140477118 - ID4_ SINE ID -2 81 2 3 1017 302 363 0 43 chr1 56718697 56718838 -140476594 - RSINE1 SINE B4 -28 137 3 3 1017 309 132 54 54 chr1 56718940 56718996 -140476436 - PB1D7 SINE Alu 0 120 65 3 1017 654 243 0 35 chr1 56718946 56719087 -140476345 - ID_B1 SINE B4 -3 221 86 3 1017 684 290 60 0 chr1 56719445 56719645 -140475787 + ID_B1 SINE B4 1 212 -12 3 1017 387 0 0 0 chr1 56719649 56719692 -140475740 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1017 682 286 10 44 chr1 56719743 56719948 -140475484 + B3 SINE B2 5 202 -14 3 1017 208 348 10 25 chr1 56719992 56720087 -140475345 + MIR SINE MIR 79 180 -88 3 1017 409 318 29 65 chr1 56720097 56720235 -140475197 + MLT1A LTR MaLR 2 134 -240 3 1017 306 339 50 65 chr1 56720579 56720890 -140474542 + L2a LINE L2 3071 3419 -7 3 1017 232 327 48 29 chr1 56721949 56722053 -140473379 - MLT1A1 LTR MaLR -2 388 283 3 1017 372 311 0 0 chr1 56722140 56722243 -140473189 - PB1D10 SINE Alu -6 111 9 3 1017 294 232 58 0 chr1 56722315 56722384 -140473048 - MLT1A1 LTR MaLR -316 92 20 3 1017 381 93 0 0 chr1 56722517 56722571 -140472861 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1017 207 137 0 73 chr1 56722571 56722626 -140472806 + A-rich Low_complexity Low_complexity 3 53 0 3 1017 188 317 114 48 chr1 56722875 56723147 -140472285 - L2 LINE L2 -359 3060 2771 3 1017 330 278 60 117 chr1 56723356 56723747 -140471685 - Lx8 LINE L1 -42 7431 7059 3 1017 215 353 24 48 chr1 56724128 56724253 -140471179 + MIR SINE MIR 73 194 -68 3 1017 999 281 141 93 chr1 56724259 56724627 -140470805 + Lx9 LINE L1 5811 6281 -1363 3 1017 4432 145 19 99 chr1 56724627 56725607 -140469825 + RLTR13D6 LTR ERVK 1 902 0 3 1017 999 281 141 93 chr1 56725607 56726274 -140469158 + Lx9 LINE L1 6282 6895 -749 3 1017 251 226 43 101 chr1 56726675 56726744 -140468688 + PB1D10 SINE Alu 47 111 -6 3 1017 219 36 0 0 chr1 56727962 56727990 -140467442 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1017 194 270 31 31 chr1 56728871 56728936 -140466496 + MER5A DNA MER1_type 125 189 0 3 1017 925 158 13 9 chr1 56729679 56729896 -140465536 + GA-rich Low_complexity Low_complexity 1 217 0 3 1017 281 337 0 0 chr1 56730133 56730216 -140465216 - L2b LINE L2 -6 3369 3287 3 1017 414 0 0 0 chr1 56730566 56730612 -140464820 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1017 535 282 17 0 chr1 56730612 56730721 -140464711 - RSINE1 SINE B4 -41 124 14 3 1017 408 192 0 0 chr1 56730721 56730794 -140464638 + MTC LTR MaLR 1 73 -348 3 1017 746 157 7 0 chr1 56730804 56730944 -140464488 + GA-rich Low_complexity Low_complexity 5 145 0 3 1017 1970 193 6 19 chr1 56730945 56731305 -140464127 + MTC LTR MaLR 67 421 0 3 1017 182 262 121 15 chr1 56731361 56731427 -140464005 - MIRc SINE MIR -174 94 22 3 1017 1850 270 96 9 chr1 56732704 56733286 -140462146 - Lx8 LINE L1 -351 7122 6490 3 1017 212 210 32 0 chr1 56734919 56734981 -140460451 + T-rich Low_complexity Low_complexity 2 65 0 3 1017 577 134 0 0 chr1 56735355 56735437 -140459995 + B1_Mus2 SINE Alu 60 141 -6 3 1017 911 110 14 0 chr1 56735438 56735584 -140459848 + (GAAA)n Simple_repeat Simple_repeat 3 150 0 3 1017 374 185 0 12 chr1 56735628 56735710 -140459722 + GA-rich Low_complexity Low_complexity 1 81 0 3 1017 235 302 0 0 chr1 56735855 56735908 -140459524 + MLT1D LTR MaLR 395 447 -58 3 1017 205 349 23 11 chr1 56736122 56736209 -140459223 + MIRm SINE MIR 89 176 -100 3 1017 599 295 0 0 chr1 56737212 56737341 -140458091 - RSINE1 SINE B4 -29 136 8 3 1017 209 33 33 0 chr1 56737657 56737687 -140457745 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 3 1017 5233 164 59 104 chr1 56737878 56740094 -140455338 - Lx2B LINE L1 -18 6982 4837 3 1017 276 295 182 28 chr1 56740106 56740249 -140455183 + MER5A DNA MER1_type 18 182 -7 3 1017 225 0 0 0 chr1 56741027 56741052 -140454380 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1017 219 36 0 0 chr1 56741310 56741338 -140454094 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1017 610 110 0 27 chr1 56743116 56743228 -140452204 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 3 1017 2481 194 39 25 chr1 56744006 56744642 -140450790 + RLTR31_Mm LTR ERVK 1 559 -2 3 1017 2098 154 97 6 chr1 56744745 56745250 -140450182 + L1_Mur3 LINE L1 841 1393 -4487 3 1017 1787 211 68 23 chr1 56745250 56745677 -140449755 - RLTR41 LTR ERV1 0 446 1 3 1017 1492 144 94 14 chr1 56745677 56745788 -140449644 + L1_Mur3 LINE L1 1394 1509 -4371 3 1017 357 24 0 0 chr1 56745788 56745830 -140449602 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1017 1492 144 94 14 chr1 56745830 56745894 -140449538 + L1_Mur3 LINE L1 1510 1591 -4289 3 1017 2629 153 46 2 chr1 56745892 56746417 -140449015 + L1_Mur3 LINE L1 3831 4378 -1502 3 1017 286 220 33 0 chr1 56746474 56746565 -140448867 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 1017 648 0 0 0 chr1 56746570 56746642 -140448790 + (CATATA)n Simple_repeat Simple_repeat 2 73 0 3 1017 5595 135 8 18 chr1 56746647 56747631 -140447801 + L1_Mm LINE L1 4820 5793 -90 3 1017 4757 83 3 1 chr1 56747628 56748315 -140447117 - L1_Mm LINE L1 -2779 3104 2417 3 1017 11315 71 10 0 chr1 56748314 56749919 -140445513 + L1_Mm LINE L1 3115 4735 -1148 3 1017 6704 45 30 3 chr1 56749943 56750789 -140444643 + L1Md_F2 LINE L1 5715 6582 0 3 1017 6137 89 2 6 chr1 56750785 56751642 -140443790 + L1_Mus4 LINE L1 5783 6636 0 3 1017 27 49 0 0 chr1 56751670 56751711 -140443721 + AT_rich Low_complexity Low_complexity 1 41 0 3 1017 27 29 0 0 chr1 56751760 56751794 -140443638 + AT_rich Low_complexity Low_complexity 1 34 0 3 1017 199 194 48 0 chr1 56751806 56751909 -140443523 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 1017 252 213 71 0 chr1 56751916 56752110 -140443322 + (TA)n Simple_repeat Simple_repeat 1 207 0 3 1017 1846 250 21 28 chr1 56752113 56752582 -140442850 - RLTR20B2 LTR ERVK 0 560 95 3 1017 440 207 11 0 chr1 56752576 56752663 -140442769 - ORR1A2 LTR MaLR -239 88 1 3 1017 230 200 0 0 chr1 56752663 56752708 -140442724 + Lx6 LINE L1 5917 5961 -1499 3 1017 270 0 0 0 chr1 56752708 56752738 -140442694 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 1017 4091 226 41 83 chr1 56752743 56753504 -140441928 + Lx7 LINE L1 6267 7039 -657 3 1017 1316 163 9 5 chr1 56753504 56753726 -140441706 - URR1B DNA MER1_type 0 225 3 3 127 4091 226 41 83 chr1 56753726 56754217 -140441215 + Lx7 LINE L1 7040 7466 -230 3 1018 337 176 0 13 chr1 56754224 56754299 -140441133 + RLTR16 LTR ERVK 388 461 -44 3 1018 206 258 15 29 chr1 56754429 56754497 -140440935 + CT-rich Low_complexity Low_complexity 6 72 0 3 1018 271 331 185 0 chr1 56754751 56754768 -140440664 + ID_B1 SINE B4 70 223 -1 3 1018 421 278 26 44 chr1 56754768 56754881 -140440551 + PB1D10 SINE Alu 6 116 -1 3 1018 1704 184 134 11 chr1 56755594 56755951 -140439481 + MTD LTR MaLR 19 419 0 3 1018 321 252 0 80 chr1 56755992 56756104 -140439328 + Lx9 LINE L1 6543 6645 -999 3 1018 294 385 49 0 chr1 56756142 56756285 -140439147 - L2 LINE L2 -839 2580 2431 3 1018 214 347 125 0 chr1 56756368 56756440 -140438992 + RSINE1 SINE B4 5 85 -80 3 1018 2701 188 82 72 chr1 56756446 56757058 -140438374 - RMER20B LTR ERVK 0 627 10 3 1018 286 330 37 19 chr1 56757721 56757829 -140437603 + MIR3 SINE MIR 85 194 -14 3 1018 9157 87 35 4 chr1 56758117 56759180 -140436252 - Lx3_Mus LINE L1 0 7009 5908 3 1018 279 0 0 0 chr1 56759180 56759211 -140436221 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1018 13523 70 9 2 chr1 56759211 56761114 -140434318 - Lx3_Mus LINE L1 -1102 5907 3994 3 1018 681 289 23 14 chr1 56761192 56761498 -140433934 - L1MA4 LINE L1 -277 6020 5719 3 1018 369 228 0 0 chr1 56761609 56761688 -140433744 + L1MA4 LINE L1 5858 5936 -364 3 1018 600 255 31 20 chr1 56761705 56761901 -140433531 - L1MA4 LINE L1 -580 5711 5514 3 1018 216 158 0 0 chr1 56764806 56764844 -140430588 + (ATG)n Simple_repeat Simple_repeat 3 40 0 3 1018 451 324 6 6 chr1 56765187 56765370 -140430062 + HERV16-int LTR ERVL 2477 2659 -2337 3 1018 384 22 0 0 chr1 56765444 56765489 -140429943 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1018 588 271 6 25 chr1 56765840 56765999 -140429433 + RSINE1 SINE B4 4 159 -6 3 1018 2014 45 0 0 chr1 56766504 56766746 -140428686 + L1Md_T LINE L1 6341 6582 0 3 1018 220 196 0 35 chr1 56766761 56766777 -140428655 + A-rich Low_complexity Low_complexity 1 15 0 3 1018 1250 41 0 0 chr1 56766777 56766924 -140428508 + B1_Mus2 SINE Alu 1 147 0 3 1018 220 196 0 35 chr1 56766924 56766965 -140428467 + A-rich Low_complexity Low_complexity 16 56 0 3 1018 199 50 75 0 chr1 56768939 56768979 -140426453 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 3 1018 328 40 40 0 chr1 56769633 56769683 -140425749 + (TTCTC)n Simple_repeat Simple_repeat 2 53 0 3 1018 630 149 0 0 chr1 56769767 56769901 -140425531 + (TC)n Simple_repeat Simple_repeat 1 134 0 3 1018 372 322 87 4 chr1 56770921 56771152 -140424280 + L1ME3A LINE L1 5612 5861 -312 3 1018 33864 34 0 0 chr1 56771222 56777030 -140418402 + L1Md_T LINE L1 1 5589 -297 3 1018 9595 5 0 0 chr1 56777030 56778026 -140417406 + L1Md_T LINE L1 5590 6585 0 3 1018 1098 296 143 49 chr1 56778049 56778596 -140416836 - Lx8 LINE L1 -673 6800 6203 3 1018 196 18 31 125 chr1 56779037 56779101 -140416331 + T-rich Low_complexity Low_complexity 3 60 0 3 1018 765 359 156 41 chr1 56779139 56779915 -140415517 + FordPrefect DNA Tip100 570 1434 -249 4 1018 514 254 42 7 chr1 56779931 56780074 -140415358 + FordPrefect DNA Tip100 1515 1662 -21 4 1018 393 214 14 0 chr1 56782543 56782613 -140412819 + tRNA-Asp-GAY tRNA tRNA 1 71 -4 4 1018 339 308 121 15 chr1 56782749 56782881 -140412551 + Ricksha_c DNA MuDR 702 847 -1201 4 1018 209 108 27 0 chr1 56782881 56782918 -140412514 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 4 1018 208 111 22 22 chr1 56784215 56784261 -140411171 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1018 635 254 0 0 chr1 56784685 56784803 -140410629 + B1_Mur4 SINE Alu 1 118 -32 4 1018 205 359 23 8 chr1 56784817 56784977 -140410455 - L2b LINE L2 -262 3113 2950 4 1018 247 244 81 0 chr1 56785110 56785196 -140410236 + L1MB8 LINE L1 5879 5971 -207 4 1018 472 180 16 0 chr1 56785340 56785462 -140409970 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 1018 773 198 60 6 chr1 56785469 56785496 -140409936 - MT2A LTR ERVL -41 492 466 4 1018 288 0 0 0 chr1 56785496 56785528 -140409904 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1018 1485 181 68 9 chr1 56785528 56785925 -140409507 - MT2A LTR ERVL -68 465 1 4 1018 4583 217 39 28 chr1 56785925 56786930 -140408502 - MERVL_2A-int LTR ERVL 0 5761 4746 4 1018 4298 235 40 20 chr1 56786930 56787901 -140407531 + ORR1D-int LTR MaLR 10 1000 -370 4 1018 1045 249 118 7 chr1 56788144 56788428 -140407004 - MLT1B LTR MaLR 0 390 75 4 1018 516 269 114 5 chr1 56788428 56788630 -140406802 + MER44A DNA MER2_type 2 225 -114 4 1018 1382 148 81 8 chr1 56788640 56788886 -140406546 - MTC LTR MaLR -5 416 153 4 1018 702 256 51 56 chr1 56791418 56791633 -140403799 + B3 SINE B2 1 214 -2 4 1018 291 200 77 0 chr1 56791961 56792026 -140403406 + MER67A LTR ERV1 1 70 -473 4 1018 1193 330 44 61 chr1 56792036 56792284 -140403148 + MER67B LTR ERV1 18 267 -394 4 1018 360 0 0 0 chr1 56792284 56792324 -140403108 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1018 1193 330 42 42 chr1 56792324 56792682 -140402750 + MER67B LTR ERV1 268 581 -80 4 1018 491 82 14 0 chr1 56792900 56792973 -140402459 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1018 3352 309 43 28 chr1 56793022 56793620 -140401812 + Lx8 LINE L1 6201 6796 -677 4 1018 1123 210 83 0 chr1 56793620 56793825 -140401607 + URR1B DNA MER1_type 1 222 -3 4 1018 3352 309 43 28 chr1 56793825 56793896 -140401536 + Lx8 LINE L1 6797 6868 -605 4 1018 3157 26 3 3 chr1 56793896 56794242 -140401190 - ORR1A0 LTR MaLR 0 346 1 4 1018 3352 309 43 28 chr1 56794242 56794791 -140400641 + Lx8 LINE L1 6869 7439 -34 4 1018 210 143 0 0 chr1 56796385 56796420 -140399012 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1018 342 0 0 0 chr1 56796717 56796755 -140398677 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1018 618 315 52 93 chr1 56796793 56797136 -140398296 + MLT1B LTR MaLR 59 387 -3 4 1018 777 265 155 53 chr1 56797136 56797607 -140397825 + MLT1B-int LTR MaLR 56 675 -696 4 1018 859 319 35 41 chr1 56798111 56798425 -140397007 + ORR1E LTR MaLR 48 359 0 4 1018 2230 128 111 77 chr1 56799051 56799467 -140395965 - RLTR23 LTR ERV1 0 430 1 4 1018 2991 127 7 30 chr1 56799905 56800369 -140395063 + RLTR11B LTR ERVK 1 453 0 4 1018 22 0 0 0 chr1 56801095 56801117 -140394315 + AT_rich Low_complexity Low_complexity 1 22 0 4 1018 232 203 0 39 chr1 56801572 56801649 -140393783 + GA-rich Low_complexity Low_complexity 1 74 0 4 1018 320 94 19 0 chr1 56801884 56801937 -140393495 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1018 313 264 110 0 chr1 56802390 56802481 -140392951 + MIR SINE MIR 87 187 -75 4 1018 232 355 40 0 chr1 56802680 56802756 -140392676 + L2b LINE L2 3228 3306 -69 4 1018 187 215 43 0 chr1 56802954 56803047 -140392385 + (CATA)n Simple_repeat Simple_repeat 4 100 0 4 1018 507 120 21 74 chr1 56803029 56803218 -140392214 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 4 1018 210 98 31 62 chr1 56803240 56803305 -140392127 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 4 1018 323 270 107 38 chr1 56804404 56804535 -140390897 + MIR SINE MIR 117 256 -6 4 1018 264 59 0 0 chr1 56804567 56804601 -140390831 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1018 29 0 0 0 chr1 56804669 56804698 -140390734 + AT_rich Low_complexity Low_complexity 1 29 0 4 1018 394 264 49 28 chr1 56804860 56805004 -140390428 - B1F SINE Alu -1 148 2 4 1018 628 297 71 58 chr1 56805618 56806011 -140389421 + MT2A LTR ERVL 136 533 0 4 1018 228 67 0 0 chr1 56807336 56807366 -140388066 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 4 1018 1756 183 23 40 chr1 56807844 56808273 -140387159 - ORR1B2 LTR MaLR -2 376 1 4 1018 297 109 0 0 chr1 56809779 56809834 -140385598 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 1018 369 0 0 0 chr1 56809835 56809876 -140385556 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1018 1564 178 46 143 chr1 56810131 56810482 -140384950 - ORR1B1 LTR MaLR 0 394 80 4 1018 1662 81 43 115 chr1 56810482 56810760 -140384672 - L1Md_F2 LINE L1 -17 6565 6308 4 1018 1564 178 46 143 chr1 56810760 56810841 -140384591 - ORR1B1 LTR MaLR -315 79 4 4 1018 605 186 49 0 chr1 56810866 56810968 -140384464 + B3 SINE B2 1 107 -109 4 1018 370 145 0 0 chr1 56811841 56811903 -140383529 + Lx4A LINE L1 6997 7058 0 4 1018 203 154 36 55 chr1 56811913 56811929 -140383503 + polypurine Low_complexity Low_complexity 3 18 0 4 1018 1242 144 11 0 chr1 56811929 56812116 -140383316 + B2_Mm2 SINE B2 2 190 -5 4 1018 203 154 36 55 chr1 56812116 56812154 -140383278 + polypurine Low_complexity Low_complexity 19 56 0 4 1018 1676 262 81 17 chr1 56812196 56812778 -140382654 - L1M3 LINE L1 -1159 4981 4363 4 1018 210 37 0 0 chr1 56812814 56812841 -140382591 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1018 633 225 47 115 chr1 56812860 56813051 -140382381 - B3A SINE B2 -18 180 3 4 1018 1014 263 76 50 chr1 56813053 56813577 -140381855 - L1M3 LINE L1 -2389 3751 3214 4 1018 262 305 9 37 chr1 56814604 56814713 -140380719 + MLT1B LTR MaLR 23 128 -262 4 1018 246 95 0 0 chr1 56814966 56815008 -140380424 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1018 593 264 127 12 chr1 56815008 56815173 -140380259 + MTC LTR MaLR 13 196 -225 4 1018 1028 238 24 0 chr1 56815636 56815846 -140379586 + B3 SINE B2 1 215 -1 4 1018 302 156 16 0 chr1 56816111 56816175 -140379257 + (CATA)n Simple_repeat Simple_repeat 2 66 0 4 1018 333 0 0 0 chr1 56816729 56816766 -140378666 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 4 1018 951 89 0 0 chr1 56817174 56817309 -140378123 + (GGAA)n Simple_repeat Simple_repeat 4 138 0 4 1018 1233 40 0 0 chr1 56817310 56817461 -140377971 + (GAGAA)n Simple_repeat Simple_repeat 5 155 0 4 1018 386 263 24 79 chr1 56818327 56818492 -140376940 + RMER15 LTR ERVL 39 194 -381 4 1018 464 189 0 40 chr1 56818534 56818633 -140376799 + RMER15 LTR ERVL 432 526 -49 4 1018 867 302 87 11 chr1 56818889 56819335 -140376097 - L1MC2 LINE L1 -18 6326 5847 4 1018 290 351 0 0 chr1 56819335 56819412 -140376020 + ID4_ SINE ID 1 77 -6 4 1018 348 283 76 0 chr1 56819416 56819561 -140375871 - L1MC2 LINE L1 -2135 5860 5705 4 1018 447 238 139 0 chr1 56819563 56819700 -140375732 - MTEb LTR MaLR -2 377 218 4 1018 351 322 42 61 chr1 56819813 56820025 -140375407 - L1MCb LINE L1 -5204 1547 1340 4 1018 382 299 157 52 chr1 56820057 56820515 -140374917 - L1MCb LINE L1 -4977 1068 563 4 1018 316 282 97 14 chr1 56820665 56820809 -140374623 + L1MC LINE L1 2688 2843 -3303 4 1018 400 236 35 28 chr1 56820998 56821142 -140374290 + C-rich Low_complexity Low_complexity 4 148 0 4 1018 568 299 45 5 chr1 56821167 56821365 -140374067 - L1MCb LINE L1 -5772 273 68 4 1018 266 286 176 0 chr1 56821555 56821646 -140373786 - PB1D10 SINE Alu -8 109 3 4 1018 237 270 52 96 chr1 56821749 56821884 -140373548 - MIR SINE MIR -25 237 109 4 1018 4080 192 51 72 chr1 56822622 56823531 -140371901 + RMER19B LTR ERVK 1 890 -12 4 1018 431 347 19 51 chr1 56823897 56824055 -140371377 - MER63B DNA AcHobo 0 436 284 4 1018 3898 154 77 25 chr1 56824440 56825159 -140370273 - RMER6A LTR ERVK 0 756 1 4 1018 266 277 133 117 chr1 56826102 56826298 -140369134 + LTR33A_ LTR ERVL 1 199 -321 4 1018 687 258 40 0 chr1 56826586 56826737 -140368695 + ID_B1 SINE B4 11 167 -57 4 1018 259 342 91 62 chr1 56826863 56827137 -140368295 - ORR1E LTR MaLR -2 357 76 4 1018 734 299 113 70 chr1 56827198 56827772 -140367660 - ORR1E-int LTR MaLR -49 1531 838 4 1018 3169 70 74 2 chr1 56828031 56828435 -140366997 - L1Md_F2 LINE L1 -5 6577 6145 4 1018 305 284 37 0 chr1 56828536 56828617 -140366815 - MER3 DNA MER1_type -125 84 1 4 1018 663 255 34 124 chr1 56828689 56828785 -140366647 + B4 SINE B4 1 89 -203 4 1018 884 143 228 18 chr1 56828785 56828956 -140366476 + B3 SINE B2 1 207 -9 4 1018 663 255 34 124 chr1 56828956 56829092 -140366340 + B4 SINE B4 90 212 -80 4 1018 3087 9 89 0 chr1 56829092 56829429 -140366003 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1018 40400 19 10 0 chr1 56829429 56835795 -140359637 + IAPEz-int LTR ERVK 8 6481 0 4 1018 2940 9 89 0 chr1 56835795 56836132 -140359300 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1018 389 295 107 11 chr1 56837865 56838043 -140357389 + Tigger5 DNA MER2_type 48 242 -2164 4 1018 647 273 62 0 chr1 56838575 56838750 -140356682 + B4A SINE B4 70 255 -37 4 1018 1079 69 0 0 chr1 56838750 56838895 -140356537 + MTB LTR MaLR 1 145 -255 4 1018 2908 33 0 0 chr1 56838895 56839229 -140356203 - SSU-rRNA_Hsa rRNA rRNA -279 1590 1257 4 1018 1813 43 4 0 chr1 56839229 56839463 -140355969 + MTB LTR MaLR 166 400 0 4 1018 662 204 3 7 chr1 56839495 56839791 -140355641 + (TG)n Simple_repeat Simple_repeat 1 294 0 4 1018 568 197 0 17 chr1 56839803 56839984 -140355448 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1018 184 407 0 0 chr1 56840050 56840141 -140355291 - L4 LINE RTE -332 1697 1607 4 1018 1023 150 80 76 chr1 56840989 56841181 -140354251 + URR1B DNA MER1_type 1 194 -31 4 1018 4731 112 6 65 chr1 56841181 56842041 -140353391 - RMER17D2 LTR ERVK 0 809 1 4 1018 1023 150 80 76 chr1 56842041 56842072 -140353360 + URR1B DNA MER1_type 195 225 0 4 1018 368 254 255 21 chr1 56842423 56842568 -140352864 + B3A SINE B2 3 181 -17 4 1018 339 85 0 0 chr1 56842589 56842636 -140352796 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1018 589 246 112 54 chr1 56842647 56842888 -140352544 - RMER1C Other Other -473 869 615 4 1018 783 75 0 0 chr1 56842941 56843061 -140352371 + (TG)n Simple_repeat Simple_repeat 2 121 0 4 1018 7121 141 11 2 chr1 56843422 56845064 -140350368 + Lx LINE L1 4995 6648 -6 4 1018 264 95 47 23 chr1 56845083 56845169 -140350263 + (CAAA)n Simple_repeat Simple_repeat 2 89 0 4 1018 252 190 17 33 chr1 56845523 56845583 -140349849 + G-rich Low_complexity Low_complexity 4 62 0 4 1018 21 100 0 0 chr1 56846156 56846226 -140349206 + AT_rich Low_complexity Low_complexity 1 70 0 4 1018 198 350 24 24 chr1 56846478 56846560 -140348872 + MIRb SINE MIR 4 85 -183 4 1018 1260 248 46 15 chr1 56846647 56846971 -140348461 - MTD LTR MaLR -85 334 1 5 1018 355 296 0 34 chr1 56847848 56847967 -140347465 - PB1D10 SINE Alu 0 117 3 5 1018 231 213 0 21 chr1 56848301 56848349 -140347083 + CT-rich Low_complexity Low_complexity 3 49 0 5 1018 317 214 109 30 chr1 56848354 56848455 -140346977 - Lx9 LINE L1 0 7644 7536 5 1018 252 0 0 0 chr1 56848455 56848483 -140346949 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 1018 267 141 47 0 chr1 56848555 56848619 -140346813 + CT-rich Low_complexity Low_complexity 2 68 0 5 1018 558 0 0 0 chr1 56848619 56848681 -140346751 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1018 503 304 57 70 chr1 56848686 56848886 -140346546 - ID_B1 SINE B4 -26 198 1 5 1018 180 125 0 0 chr1 56852445 56852477 -140342955 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1018 605 49 0 12 chr1 56852484 56852566 -140342866 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 5 1018 186 171 0 0 chr1 56853230 56853271 -140342161 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1018 190 81 26 26 chr1 56853514 56853552 -140341880 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1018 505 280 21 14 chr1 56854275 56854420 -140341012 + B1F2 SINE Alu 2 147 -2 5 1018 765 90 0 0 chr1 56854423 56854534 -140340898 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 1018 4666 147 28 23 chr1 56854778 56855573 -140339859 + Lx2B LINE L1 6196 6994 -6 5 1018 1206 56 0 0 chr1 56855597 56855740 -140339692 + B1_Mm SINE Alu 5 147 0 5 1018 21 36 0 0 chr1 56855740 56855768 -140339664 + AT_rich Low_complexity Low_complexity 1 28 0 5 1018 283 301 32 21 chr1 56857136 56857231 -140338201 + PB1D10 SINE Alu 2 97 -20 5 1018 1380 69 0 4 chr1 56858838 56859291 -140336141 + (TCCA)n Simple_repeat Simple_repeat 1 451 0 5 1018 555 37 37 0 chr1 56859700 56859782 -140335650 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 1018 552 268 132 0 chr1 56859783 56859996 -140335436 - Lx9 LINE L1 -158 7486 7246 5 1018 635 148 15 3 chr1 56860351 56860479 -140334953 + B1_Mur3 SINE Alu 7 136 -13 5 1018 318 319 74 18 chr1 56860481 56860644 -140334788 + L1ME3 LINE L1 5991 6162 0 5 1018 680 284 87 40 chr1 56861725 56862000 -140333432 - B4 SINE B4 0 292 5 5 1018 247 153 52 65 chr1 56862010 56862087 -140333345 - Charlie5 DNA MER1_type -2504 120 45 5 1018 180 0 0 0 chr1 56863253 56863273 -140332159 + (TGG)n Simple_repeat Simple_repeat 2 21 0 5 1018 453 283 37 33 chr1 56864351 56864542 -140330890 - B3A SINE B2 -2 193 1 5 1018 568 78 67 0 chr1 56864904 56864994 -140330438 + B1_Mus2 SINE Alu 52 147 0 5 1018 659 294 91 45 chr1 56865132 56865574 -140329858 + Charlie1a DNA MER1_type 712 1173 -282 5 1018 1233 143 22 27 chr1 56866899 56867122 -140328310 - URR1B DNA MER1_type -3 222 1 5 1018 183 42 0 0 chr1 56867153 56867177 -140328255 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1018 905 239 10 5 chr1 56867571 56867777 -140327655 + B3 SINE B2 5 211 -5 5 1018 387 60 0 0 chr1 56870314 56870364 -140325068 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1018 404 82 0 16 chr1 56870364 56870425 -140325007 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1018 27 49 0 0 chr1 56871652 56871693 -140323739 + AT_rich Low_complexity Low_complexity 1 41 0 5 1018 22 0 0 0 chr1 56873157 56873179 -140322253 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 22 0 0 0 chr1 56874462 56874484 -140320948 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 243 0 0 0 chr1 56874485 56874512 -140320920 + (CATA)n Simple_repeat Simple_repeat 3 29 0 5 1018 227 236 0 14 chr1 56876206 56876279 -140319153 + GA-rich Low_complexity Low_complexity 1 72 0 5 1018 5593 68 17 0 chr1 56876578 56877289 -140318143 + L1_Mus1 LINE L1 5845 6567 0 5 1018 890 256 19 0 chr1 56877317 56877524 -140317908 + B3 SINE B2 1 211 -5 5 1018 261 0 0 0 chr1 56878689 56878718 -140316714 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1018 354 234 13 25 chr1 56881582 56881740 -140313692 + GA-rich Low_complexity Low_complexity 4 159 0 5 1018 449 259 160 6 chr1 56881890 56882065 -140313367 - MER20 DNA MER1_type -17 202 1 5 1018 941 197 136 0 chr1 56882620 56882818 -140312614 + URR1B DNA MER1_type 1 225 0 5 1018 946 212 19 51 chr1 56882982 56883196 -140312236 - B3 SINE B2 -8 208 2 5 1018 7068 54 1 7 chr1 56883323 56884207 -140311225 + L1Md_F2 LINE L1 5704 6582 0 5 1019 303 333 0 0 chr1 56886339 56886423 -140309009 + PB1D10 SINE Alu 34 117 0 5 1019 25 31 0 0 chr1 56886423 56886455 -140308977 + AT_rich Low_complexity Low_complexity 1 32 0 5 1019 222 37 0 0 chr1 56888023 56888050 -140307382 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1019 192 260 0 57 chr1 56888598 56888654 -140306778 - L2b LINE L2 -9 3378 3320 5 1019 1167 29 0 0 chr1 56888663 56888801 -140306631 - L1Md_A LINE L1 0 6582 6445 5 1019 1180 42 0 27 chr1 56888801 56888948 -140306484 + L1Md_F3 LINE L1 6303 6445 -139 5 1019 186 133 0 0 chr1 56889070 56889100 -140306332 + (CAT)n Simple_repeat Simple_repeat 1 30 0 5 1019 933 262 10 35 chr1 56889109 56889307 -140306125 - ID_B1 SINE B4 -29 195 3 5 1019 26 0 0 0 chr1 56890671 56890697 -140304735 + AT_rich Low_complexity Low_complexity 1 26 0 5 1019 237 288 138 112 chr1 56892997 56893424 -140302008 + L1MC4a LINE L1 7445 7882 0 5 1019 7608 30 1 1 chr1 56894410 56895295 -140300137 - L1Md_F3 LINE L1 0 6584 5700 5 1019 228 310 0 0 chr1 56896048 56896106 -140299326 + PB1D10 SINE Alu 28 85 -32 5 1019 279 229 29 0 chr1 56898529 56898599 -140296833 + L1M2 LINE L1 4535 4606 -1534 5 1019 365 209 15 0 chr1 56898607 56898674 -140296758 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 5 1019 341 202 229 25 chr1 56898693 56898815 -140296617 + L1M2 LINE L1 4598 4744 -1399 5 1019 309 305 0 0 chr1 56898815 56898897 -140296535 + ID4 SINE ID 1 82 -1 5 1019 406 213 78 42 chr1 56898908 56899050 -140296382 + L1M2 LINE L1 4741 4887 -1256 5 1019 230 231 88 44 chr1 56899053 56899112 -140296320 + PB1D10 SINE Alu 41 103 -14 5 1019 273 98 0 0 chr1 56899112 56899153 -140296279 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 5 1019 342 220 68 29 chr1 56899168 56899271 -140296161 + L1M2 LINE L1 4915 5021 -1119 5 1019 321 26 0 0 chr1 56899680 56899718 -140295714 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 5 1019 423 0 0 0 chr1 56901186 56901233 -140294199 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1019 25 0 0 0 chr1 56902062 56902087 -140293345 + AT_rich Low_complexity Low_complexity 1 25 0 5 1019 192 317 87 47 chr1 56903799 56903971 -140291461 - MIRb SINE MIR -10 258 80 5 1019 235 344 53 38 chr1 56904240 56904373 -140291059 + MIRc SINE MIR 9 143 -125 5 1019 437 244 151 29 chr1 56904650 56904789 -140290643 - ID_B1 SINE B4 0 224 69 5 1019 633 80 0 0 chr1 56906131 56906219 -140289213 + (GA)n Simple_repeat Simple_repeat 2 89 0 5 1019 205 72 45 45 chr1 56906219 56906263 -140289169 + GA-rich Low_complexity Low_complexity 2 45 0 5 1019 417 356 0 58 chr1 56906287 56906478 -140288954 + polypurine Low_complexity Low_complexity 1 180 0 5 1019 1094 209 23 0 chr1 56908121 56908341 -140287091 + URR1A DNA MER1_type 2 226 0 5 1019 571 243 131 7 chr1 56908808 56908953 -140286479 + RSINE1 SINE B4 2 164 -1 5 1019 275 104 21 0 chr1 56909231 56909279 -140286153 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1019 21 36 0 0 chr1 56909871 56909899 -140285533 + AT_rich Low_complexity Low_complexity 1 28 0 5 1019 431 18 18 0 chr1 56910649 56910705 -140284727 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1019 204 40 0 0 chr1 56911257 56911282 -140284150 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1019 1225 69 0 0 chr1 56911490 56911635 -140283797 + B1_Mus1 SINE Alu 1 145 -3 5 1019 384 242 61 31 chr1 56912314 56912412 -140283020 + PB1D7 SINE Alu 18 118 -2 5 1019 279 297 9 35 chr1 56912412 56912527 -140282905 + GA-rich Low_complexity Low_complexity 2 113 0 5 1019 188 252 85 66 chr1 56912604 56912710 -140282722 - L2c LINE L2 -231 3156 3049 5 1019 204 40 0 0 chr1 56913924 56913949 -140281483 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5 1019 269 253 145 13 chr1 56916481 56916557 -140278875 + PB1 SINE Alu 2 87 -40 5 1019 443 220 48 56 chr1 56916492 56916617 -140278815 + ID_B1 SINE B4 94 217 -7 5 1019 21 0 0 0 chr1 56916682 56916703 -140278729 + AT_rich Low_complexity Low_complexity 1 21 0 5 1019 225 0 0 0 chr1 56918802 56918827 -140276605 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1019 201 286 0 0 chr1 56919993 56920042 -140275390 + C-rich Low_complexity Low_complexity 1 49 0 5 1019 2149 124 12 53 chr1 56921042 56921382 -140274050 + ORR1A3 LTR MaLR 1 326 0 5 1019 402 21 0 0 chr1 56922826 56922873 -140272559 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 1019 339 156 78 0 chr1 56923695 56923759 -140271673 - ORR1E LTR MaLR -4 375 307 5 1019 4001 165 57 51 chr1 56923768 56923989 -140271443 + RLTR25B LTR ERVK 5 210 -818 5 1019 990 40 128 0 chr1 56923989 56924114 -140271318 + B1_Mus1 SINE Alu 5 145 -3 5 1019 4001 165 57 51 chr1 56924114 56924736 -140270696 + RLTR25B LTR ERVK 211 853 -175 5 1019 548 227 251 31 chr1 56925097 56925320 -140270112 + RLTR25B LTR ERVK 757 1028 0 5 1019 520 242 154 28 chr1 56925330 56925554 -140269878 - ORR1E LTR MaLR -118 252 1 5 1019 231 36 0 0 chr1 56925954 56925982 -140269450 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1019 354 74 0 0 chr1 56926166 56926220 -140269212 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1019 1301 54 0 0 chr1 56926220 56926367 -140269065 - B1_Mus2 SINE Alu 0 147 1 5 1019 215 294 176 34 chr1 56926778 56926926 -140268506 + MER5A DNA MER1_type 3 171 -18 5 1019 309 305 24 30 chr1 56927466 56927635 -140267797 + (TG)n Simple_repeat Simple_repeat 1 168 0 5 1019 586 312 38 63 chr1 56927715 56927785 -140267647 - B4A SINE B4 -7 285 220 6 1019 444 19 0 0 chr1 56927785 56927838 -140267594 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1019 586 312 38 63 chr1 56927838 56928054 -140267378 - B4A SINE B4 -73 219 6 6 1019 26 64 0 0 chr1 56928821 56928868 -140266564 + AT_rich Low_complexity Low_complexity 1 47 0 6 1019 932 188 171 5 chr1 56928868 56929061 -140266371 + URR1B DNA MER1_type 1 225 0 6 1019 338 295 11 0 chr1 56929767 56929862 -140265570 + Kanga2_a DNA Tc2 124 219 -669 6 1019 251 238 48 0 chr1 56929998 56930061 -140265371 + B1_Mur2 SINE Alu 46 111 -38 6 1019 572 315 49 0 chr1 56930200 56930362 -140265070 - B3A SINE B2 -16 182 13 6 1019 275 293 146 34 chr1 56930551 56930746 -140264686 + Kanga2_a DNA Tc2 608 826 -62 6 1019 522 0 0 0 chr1 56930746 56930804 -140264628 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1019 275 293 146 34 chr1 56930804 56930841 -140264591 + Kanga2_a DNA Tc2 827 865 -23 6 1019 836 155 48 27 chr1 56931694 56931840 -140263592 + B1_Mur3 SINE Alu 1 149 0 6 1019 440 91 3 3 chr1 56931892 56931974 -140263458 + B1_Mur4 SINE Alu 39 150 0 6 1019 425 19 19 0 chr1 56932010 56932064 -140263368 + (GGA)n Simple_repeat Simple_repeat 3 57 0 6 1019 1599 5 0 0 chr1 56932064 56932265 -140263167 + (GAA)n Simple_repeat Simple_repeat 1 201 0 6 1019 221 294 0 14 chr1 56932867 56932936 -140262496 + CT-rich Low_complexity Low_complexity 1 68 0 6 1019 553 157 287 0 chr1 56933680 56933788 -140261644 - B1_Mus1 SINE Alu -8 140 2 6 1019 216 158 0 0 chr1 56933907 56933945 -140261487 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1019 22 35 0 0 chr1 56934610 56934639 -140260793 + AT_rich Low_complexity Low_complexity 1 29 0 6 1019 254 229 14 0 chr1 56934689 56934759 -140260673 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 6 1019 572 125 10 0 chr1 56934772 56934868 -140260564 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 1019 1035 243 5 14 chr1 56934958 56935175 -140260257 - B3 SINE B2 0 216 2 6 1019 23 54 0 0 chr1 56935239 56935276 -140260156 + AT_rich Low_complexity Low_complexity 1 37 0 6 1019 494 240 91 23 chr1 56935530 56935662 -140259770 + ID_B1 SINE B4 72 212 -12 6 1019 486 317 49 7 chr1 56935760 56935903 -140259529 + RSINE1 SINE B4 3 151 -14 6 1019 207 0 0 0 chr1 56936110 56936133 -140259299 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1019 404 277 9 33 chr1 56936185 56936285 -140259147 + PB1D7 SINE Alu 7 104 -210 6 1019 820 217 0 0 chr1 56937089 56937227 -140258205 - RSINE1 SINE B4 -25 140 3 6 1019 526 183 153 38 chr1 56937489 56937620 -140257812 + B1_Mm SINE Alu 2 147 0 6 1019 942 153 0 0 chr1 56937622 56937785 -140257647 + GA-rich Low_complexity Low_complexity 2 164 0 6 1019 21 36 0 0 chr1 56938059 56938087 -140257345 + AT_rich Low_complexity Low_complexity 1 28 0 6 1019 238 234 15 15 chr1 56938665 56938730 -140256702 + MADE2 DNA Mariner 15 79 -1 6 1019 22 0 0 0 chr1 56939558 56939580 -140255852 + AT_rich Low_complexity Low_complexity 1 22 0 6 1019 789 11 0 0 chr1 56939587 56939677 -140255755 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1019 883 174 220 11 chr1 56940308 56940494 -140254938 + URR1A DNA MER1_type 2 226 0 6 1019 262 247 32 11 chr1 56940768 56940862 -140254570 + Lx9 LINE L1 7549 7644 0 6 1019 374 151 14 0 chr1 56940871 56940944 -140254488 + GA-rich Low_complexity Low_complexity 2 75 0 6 1019 195 42 0 0 chr1 56940996 56941020 -140254412 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1019 186 43 0 0 chr1 56942754 56942777 -140252655 + (TGGA)n Simple_repeat Simple_repeat 2 24 0 6 1019 324 0 0 0 chr1 56946141 56946177 -140249255 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1019 1118 107 0 0 chr1 56947294 56947453 -140247979 + URR1A DNA MER1_type 68 226 0 6 1019 300 370 17 0 chr1 56947456 56947575 -140247857 - MIRb SINE MIR -103 165 45 6 1019 1202 100 0 6 chr1 56949091 56949272 -140246160 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1019 195 42 0 0 chr1 56950246 56950270 -140245162 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 6 1019 292 270 26 51 chr1 56951067 56951145 -140244287 - ID4 SINE ID -2 81 6 6 1019 671 274 13 0 chr1 56952148 56952301 -140243131 - RSINE1 SINE B4 -8 157 3 6 1019 475 316 14 14 chr1 56952549 56952687 -140242745 + B1F2 SINE Alu 12 149 0 6 1019 273 253 36 12 chr1 56952775 56952859 -140242573 + B1F1 SINE Alu 1 86 -63 6 1019 235 309 65 8 chr1 56953469 56953593 -140241839 + L1MB3 LINE L1 6044 6174 -9 6 1019 189 95 78 16 chr1 56954338 56954402 -140241030 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1019 291 71 0 0 chr1 56957308 56957350 -140238082 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1019 274 277 264 18 chr1 56957867 56958099 -140237333 + L1ME2 LINE L1 5864 6152 -12 6 1019 234 375 65 43 chr1 56958101 56958130 -140237302 + B1F1 SINE Alu 2 93 -54 6 1019 270 267 0 16 chr1 56958130 56958191 -140237241 + ID_B1 SINE B4 141 200 -24 6 1019 686 285 139 12 chr1 56958196 56958455 -140236977 + B4A SINE B4 1 292 0 6 1019 333 0 0 0 chr1 56958475 56958512 -140236920 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1019 297 0 0 0 chr1 56958512 56958544 -140236888 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1019 381 314 87 64 chr1 56959008 56959226 -140236206 + MIRb SINE MIR 6 228 -40 6 1019 263 367 20 0 chr1 56959315 56959413 -140236019 + MIR SINE MIR 86 185 -77 6 1019 448 170 113 57 chr1 56960168 56960274 -140235158 - PB1D10 SINE Alu -1 116 5 6 1019 21 36 0 0 chr1 56961230 56961258 -140234174 + AT_rich Low_complexity Low_complexity 1 28 0 6 1019 1163 198 10 10 chr1 56962830 56963039 -140232393 + B3 SINE B2 1 209 -7 6 1019 221 244 0 0 chr1 56963176 56963217 -140232215 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1019 4014 50 0 0 chr1 56964294 56964750 -140230682 + L1_Mus1 LINE L1 6112 6567 0 6 1019 384 22 0 0 chr1 56964825 56964870 -140230562 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6 1019 554 226 22 64 chr1 56964870 56965010 -140230422 - B1_Mur2 SINE Alu -11 138 7 6 1019 204 200 0 141 chr1 56965375 56965439 -140229993 + L2b LINE L2 3320 3374 -1 6 1019 237 65 0 0 chr1 56965850 56965881 -140229551 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1019 421 324 48 7 chr1 56966488 56966634 -140228798 + RSINE1 SINE B4 3 154 -11 6 1019 260 211 115 26 chr1 56966830 56966908 -140228524 + ORR1D2 LTR MaLR 1 85 -274 6 1019 368 320 103 40 chr1 56966924 56967226 -140228206 + ORR1D2 LTR MaLR 56 370 0 6 1019 2086 124 29 35 chr1 56967576 56967918 -140227514 + Lx2 LINE L1 6656 6995 -2 6 1019 1485 179 228 3 chr1 56968221 56968519 -140226913 + ORR1B2 LTR MaLR 3 367 0 6 1019 29 28 0 0 chr1 56969160 56969196 -140226236 + AT_rich Low_complexity Low_complexity 1 36 0 6 1019 451 211 22 11 chr1 56970784 56970875 -140224557 + BC1_Mm scRNA scRNA 1 92 -60 6 1019 550 197 32 2 chr1 56970875 56970887 -140224545 + ID_B1 SINE B4 1 109 -56 6 1019 268 303 73 103 chr1 56970887 56970920 -140224512 + B2_Mm1a SINE B2 1 132 -61 6 1019 428 181 14 29 chr1 56972517 56972612 -140222820 + MER34A1 LTR ERV1 467 569 -18 6 1019 314 332 113 32 chr1 56973795 56974016 -140221416 - MIRb SINE MIR -12 256 18 6 1019 404 264 36 9 chr1 56975150 56975261 -140220171 + ID_B1 SINE B4 107 220 -4 6 1019 531 202 123 0 chr1 56976685 56976799 -140218633 + B1_Mur4 SINE Alu 2 129 -21 6 1019 180 0 0 0 chr1 56976928 56976948 -140218484 + (TATATG)n Simple_repeat Simple_repeat 1 20 0 6 1019 186 281 97 69 chr1 56977735 56977880 -140217552 - MER5A DNA MER1_type 0 189 41 6 1019 423 0 0 0 chr1 56978111 56978158 -140217274 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1019 733 247 40 75 chr1 56978861 56979062 -140216370 - B3A SINE B2 -1 197 4 6 1019 213 39 0 0 chr1 56979906 56979932 -140215500 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1019 328 272 138 14 chr1 56980365 56980503 -140214929 + HAL1-3A_ME LINE L1 2284 2438 -420 6 1019 396 0 0 0 chr1 56981912 56981956 -140213476 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1019 273 29 0 0 chr1 56983325 56983359 -140212073 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1019 501 17 0 0 chr1 56984351 56984409 -140211023 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1019 183 306 116 9 chr1 56984418 56984530 -140210902 - MIRc SINE MIR -118 150 27 6 1019 288 91 0 0 chr1 56984785 56984829 -140210603 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1019 236 286 0 20 chr1 56986310 56986360 -140209072 + tRNA-Ala-GCY_ tRNA tRNA 20 68 -7 6 1019 956 182 0 33 chr1 56986580 56986726 -140208706 + B1_Mur2 SINE Alu 1 142 -7 6 1019 183 42 0 0 chr1 56986726 56986750 -140208682 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1019 369 0 0 0 chr1 56988636 56988677 -140206755 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1019 665 217 16 0 chr1 56988677 56988806 -140206626 - B4A SINE B4 -55 237 107 6 1019 297 244 253 11 chr1 56988942 56989033 -140206399 - RSINE1 SINE B4 -6 159 47 6 1019 898 124 111 61 chr1 56989202 56989382 -140206050 - B2_Mm2 SINE B2 -5 190 2 6 1019 21 57 0 0 chr1 56989741 56989776 -140205656 + AT_rich Low_complexity Low_complexity 1 35 0 6 1019 1269 68 0 0 chr1 56989776 56989924 -140205508 - B1_Mus1 SINE Alu 0 148 1 6 1019 542 224 0 41 chr1 56991289 56991410 -140204022 - PB1D10 SINE Alu -1 116 1 6 1019 437 285 113 5 chr1 56991493 56991682 -140203750 + MIR SINE MIR 31 245 -23 6 1019 3682 15 5 2 chr1 56992347 56992742 -140202690 + MTA_Mm LTR MaLR 1 396 0 6 1019 21 0 0 0 chr1 56992848 56992869 -140202563 + AT_rich Low_complexity Low_complexity 1 21 0 7 1019 411 258 34 0 chr1 56993082 56993171 -140202261 - PB1D10 SINE Alu -25 92 1 7 1019 364 316 53 0 chr1 56993171 56993195 -140202237 - ID_B1 SINE B4 -50 173 55 7 1019 276 154 0 0 chr1 56993762 56993814 -140201618 + A-rich Low_complexity Low_complexity 1 52 0 7 1019 924 63 71 0 chr1 56993979 56994106 -140201326 - L1Md_F2 LINE L1 -2 6580 6445 7 1019 450 179 61 31 chr1 56994589 56994687 -140200745 + PB1D7 SINE Alu 20 120 0 7 1019 231 88 0 0 chr1 56994822 56994856 -140200576 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1019 1204 69 7 0 chr1 56995247 56995392 -140200040 + B1_Mus2 SINE Alu 2 147 0 7 1019 216 0 0 0 chr1 56995392 56995416 -140200016 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1019 267 290 84 65 chr1 56997239 56997346 -140198086 - PB1D10 SINE Alu -40 109 1 7 1019 959 216 31 0 chr1 56997442 56997636 -140197796 - ID_B1 SINE B4 -23 201 2 7 1019 551 304 13 7 chr1 56998763 56998912 -140196520 + RSINE1 SINE B4 2 151 -14 7 1019 35 0 0 0 chr1 56999394 56999429 -140196003 + AT_rich Low_complexity Low_complexity 1 35 0 7 1019 726 174 38 8 chr1 56999688 56999821 -140195611 + B1_Mus2 SINE Alu 3 139 -8 7 1019 319 219 27 0 chr1 57000008 57000081 -140195351 + PB1D7 SINE Alu 46 120 0 1 1019 192 217 0 0 chr1 57000209 57000255 -140195177 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1019 182 312 12 59 chr1 57000436 57000521 -140194911 + MIR SINE MIR 99 179 -83 3 1019 727 250 76 10 chr1 57001191 57001389 -140194043 + B3 SINE B2 1 211 -5 4 1019 270 138 0 0 chr1 57002433 57002491 -140192941 + (A)n Simple_repeat Simple_repeat 1 58 0 5 1019 1043 92 42 0 chr1 57003877 57004019 -140191413 - B1_Mus1 SINE Alu 0 148 1 6 1019 21 0 0 0 chr1 57005768 57005789 -140189643 + AT_rich Low_complexity Low_complexity 1 21 0 7 1019 207 0 0 0 chr1 57006086 57006109 -140189323 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1019 22 56 0 0 chr1 57006453 57006489 -140188943 + AT_rich Low_complexity Low_complexity 1 36 0 9 1019 208 286 0 46 chr1 57006835 57006950 -140188482 - L2c LINE L2 -2 3385 3263 1 1019 860 296 37 11 chr1 57007573 57007846 -140187586 + B4A SINE B4 11 290 -2 1 1019 251 226 0 16 chr1 57007850 57007913 -140187519 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1019 309 109 0 0 chr1 57008024 57008070 -140187362 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1019 434 49 16 0 chr1 57008989 57009050 -140186382 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1019 373 263 109 63 chr1 57009365 57009604 -140185828 + Charlie5 DNA MER1_type 2369 2618 -6 1 1019 210 143 0 0 chr1 57010911 57010946 -140184486 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1019 265 239 60 0 chr1 57011315 57011382 -140184050 + ID4_ SINE ID 2 72 -11 1 1019 25 31 0 0 chr1 57013381 57013413 -140182019 + AT_rich Low_complexity Low_complexity 1 32 0 1 1019 23 0 0 0 chr1 57013670 57013693 -140181739 + AT_rich Low_complexity Low_complexity 1 23 0 1 1019 462 212 12 151 chr1 57014320 57014492 -140180940 - B1F2 SINE Alu -1 148 1 2 1020 282 163 242 55 chr1 57017353 57017444 -140177988 + PB1D9 SINE Alu 13 120 0 2 1020 450 0 0 0 chr1 57019535 57019585 -140175847 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1020 699 200 22 0 chr1 57019642 57019777 -140175655 - B1F SINE Alu -7 142 5 2 1020 214 174 43 0 chr1 57019943 57019989 -140175443 + A-rich Low_complexity Low_complexity 2 49 0 2 1020 25 0 0 0 chr1 57020840 57020865 -140174567 + AT_rich Low_complexity Low_complexity 1 25 0 2 1020 269 135 19 0 chr1 57021126 57021178 -140174254 + GA-rich Low_complexity Low_complexity 2 54 0 2 1020 333 125 0 0 chr1 57021546 57021602 -140173830 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1020 180 0 0 0 chr1 57022117 57022137 -140173295 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1020 410 0 0 20 chr1 57022616 57022667 -140172765 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1020 26 30 0 0 chr1 57024116 57024149 -140171283 + AT_rich Low_complexity Low_complexity 1 33 0 3 1020 241 336 0 63 chr1 57028171 57028282 -140167150 + G-rich Low_complexity Low_complexity 1 104 0 3 1020 227 241 0 0 chr1 57028794 57028848 -140166584 + G-rich Low_complexity Low_complexity 1 54 0 3 1020 201 116 0 65 chr1 57029346 57029392 -140166040 + C-rich Low_complexity Low_complexity 3 45 0 3 1020 21 0 0 0 chr1 57030859 57030880 -140164552 + AT_rich Low_complexity Low_complexity 1 21 0 3 1020 30 59 0 0 chr1 57031635 57031686 -140163746 + AT_rich Low_complexity Low_complexity 1 51 0 3 1020 630 0 0 0 chr1 57032778 57032848 -140162584 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1020 785 92 8 0 chr1 57035503 57035623 -140159809 + (TC)n Simple_repeat Simple_repeat 2 122 0 3 1020 288 0 0 0 chr1 57037348 57037380 -140158052 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1020 423 0 0 0 chr1 57038498 57038545 -140156887 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1020 557 64 13 0 chr1 57038649 57038727 -140156705 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 4 1020 1016 57 7 0 chr1 57039897 57040037 -140155395 + (GGAGA)n Simple_repeat Simple_repeat 3 143 0 4 1020 669 247 57 6 chr1 57043828 57043987 -140151445 - B3A SINE B2 -8 190 24 4 1020 453 278 51 19 chr1 57044724 57044882 -140150550 + MIRb SINE MIR 78 240 -28 4 1020 432 0 0 0 chr1 57045815 57045863 -140149569 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1020 2902 64 0 31 chr1 57045931 57046318 -140149114 - L1_Mus2 LINE L1 0 6566 6192 4 1020 249 262 16 0 chr1 57046360 57046421 -140149011 + B3A SINE B2 1 62 -136 4 1020 1327 102 0 21 chr1 57046422 57046613 -140148819 - B2_Mm2 SINE B2 -8 187 1 4 1020 189 0 0 0 chr1 57046624 57046645 -140148787 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1020 318 106 0 0 chr1 57047226 57047273 -140148159 + (CACCAT)n Simple_repeat Simple_repeat 4 50 0 4 1020 512 292 8 15 chr1 57047298 57047430 -140148002 - B1F SINE Alu -16 133 3 5 1020 377 281 75 53 chr1 57047861 57048049 -140147383 + MIRc SINE MIR 57 248 -20 5 1020 536 316 0 0 chr1 57048163 57048296 -140147136 - ID_B1 SINE B4 -11 213 81 5 1020 368 267 134 70 chr1 57048703 57048780 -140146652 - MER33 DNA MER1_type -4 320 245 5 1020 451 258 178 26 chr1 57048780 57048971 -140146461 + ID_B1 SINE B4 5 224 0 5 1020 368 267 134 70 chr1 57048971 57049191 -140146241 - MER33 DNA MER1_type -80 244 4 5 1020 452 323 41 23 chr1 57049490 57049661 -140145771 + Tigger5 DNA MER2_type 54 227 -2179 5 1020 534 248 29 59 chr1 57049701 57049904 -140145528 - B3A SINE B2 -6 210 9 5 1020 256 241 0 0 chr1 57049951 57050009 -140145423 - MER4B-int LTR ERV1 -5562 1196 1139 5 1020 654 235 0 8 chr1 57050044 57050177 -140145255 - B3 SINE B2 -80 136 5 5 1020 580 299 62 11 chr1 57051253 57051548 -140143884 + L1MA4 LINE L1 5677 5940 -1756 5 1020 410 288 104 58 chr1 57052411 57052584 -140142848 + B3A SINE B2 18 198 0 6 1020 354 371 16 24 chr1 57053618 57053745 -140141687 - ID_B1 SINE B4 -97 127 2 6 1020 585 0 0 0 chr1 57053788 57053853 -140141579 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 6 1020 261 0 0 0 chr1 57054646 57054675 -140140757 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 6 1020 499 235 80 14 chr1 57054678 57054816 -140140616 - B1_Mur1 SINE Alu -1 148 2 6 1020 21 0 0 0 chr1 57055010 57055031 -140140401 + AT_rich Low_complexity Low_complexity 1 21 0 6 1020 365 109 31 0 chr1 57055040 57055104 -140140328 - ORR1D1 LTR MaLR 0 384 319 6 1020 4620 49 0 0 chr1 57055107 57055660 -140139772 + L1Md_F2 LINE L1 5034 5586 -297 6 1020 8376 39 2 13 chr1 57055661 57055885 -140139547 + L1Md_F2 LINE L1 5588 5811 -771 6 1020 4307 20 12 2 chr1 57055885 57056373 -140139059 - MT2_Mm LTR ERVL 0 493 1 6 1020 8241 39 2 13 chr1 57056373 57057153 -140138279 + L1Md_F2 LINE L1 5812 6581 -1 6 1020 449 145 26 0 chr1 57057153 57057229 -140138203 - ORR1D1 LTR MaLR -56 328 251 6 1020 700 188 31 0 chr1 57057232 57057360 -140138072 - ORR1D1 LTR MaLR -242 132 1 6 1020 1032 212 11 5 chr1 57057365 57057550 -140137882 - B3 SINE B2 -26 190 5 6 1020 314 246 0 9 chr1 57057660 57057775 -140137657 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 1020 355 315 72 0 chr1 57057797 57057908 -140137524 + B1F SINE Alu 20 138 -11 7 1020 483 150 49 20 chr1 57058907 57059009 -140136423 + ORR1B2 LTR MaLR 1 105 -262 7 1020 2080 136 9 6 chr1 57059020 57059346 -140136086 - RLTR15 LTR ERVK -32 327 1 7 1020 1278 182 61 12 chr1 57059346 57059591 -140135841 + ORR1B2 LTR MaLR 111 367 0 7 1020 976 234 56 0 chr1 57059604 57059801 -140135631 + B3 SINE B2 8 215 -1 7 1020 277 158 70 0 chr1 57059861 57059918 -140135514 - MTD LTR MaLR -3 356 296 7 1020 331 304 107 0 chr1 57059929 57060000 -140135432 - MTD LTR MaLR -96 311 229 7 1020 1731 180 84 75 chr1 57060000 57060081 -140135351 + MTC LTR MaLR 1 81 -340 7 1020 898 117 108 18 chr1 57060081 57060247 -140135185 + B2_Mm2 SINE B2 1 181 -14 7 1020 1731 180 84 75 chr1 57060247 57060579 -140134853 + MTC LTR MaLR 82 418 -3 7 1020 331 304 107 0 chr1 57060579 57060619 -140134813 - MTD LTR MaLR -179 228 189 7 1020 28 0 0 0 chr1 57060627 57060655 -140134777 + AT_rich Low_complexity Low_complexity 1 28 0 7 1020 459 205 21 99 chr1 57060794 57060935 -140134497 - MTD LTR MaLR -279 140 11 7 1020 899 277 122 25 chr1 57061313 57061790 -140133642 + Lx9 LINE L1 7107 7629 -15 7 1020 333 0 0 0 chr1 57062048 57062085 -140133347 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1020 708 103 0 0 chr1 57062208 57062315 -140133117 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 8 1020 312 27 0 0 chr1 57062650 57062687 -140132745 + (TATG)n Simple_repeat Simple_repeat 2 38 0 8 1020 593 276 73 6 chr1 57063065 57063229 -140132203 + ID_B1 SINE B4 8 182 -42 8 1020 207 0 0 0 chr1 57063920 57063943 -140131489 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1020 758 53 221 0 chr1 57063943 57064056 -140131376 - B1_Mm SINE Alu -9 138 1 8 1020 219 146 0 0 chr1 57064062 57064103 -140131329 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 8 1020 1420 69 16 0 chr1 57064103 57064291 -140131141 - B2_Mm1t SINE B2 -2 191 1 8 1020 280 159 333 0 chr1 57064600 57064663 -140130769 - B3 SINE B2 -132 84 1 8 1020 302 289 35 17 chr1 57064665 57064781 -140130651 - L1M5 LINE L1 -2295 3851 3734 8 1020 262 24 71 0 chr1 57064801 57064843 -140130589 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 9 1020 386 282 41 93 chr1 57065232 57065404 -140130028 + RSINE1 SINE B4 3 165 0 9 1020 779 202 174 0 chr1 57065753 57065931 -140129501 + B3 SINE B2 1 209 -7 9 1020 2245 160 47 3 chr1 57066101 57066484 -140128948 + RLTR17 LTR ERVK 1 400 -292 9 1020 208 95 48 0 chr1 57066853 57066895 -140128537 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 9 1020 22 35 0 0 chr1 57066896 57066925 -140128507 + AT_rich Low_complexity Low_complexity 1 29 0 9 1020 234 0 0 0 chr1 57068440 57068466 -140126966 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 9 1020 202 118 29 0 chr1 57068469 57068503 -140126929 + (CTTG)n Simple_repeat Simple_repeat 3 37 0 9 1020 522 180 0 0 chr1 57069110 57069210 -140126222 + (TA)n Simple_repeat Simple_repeat 1 100 0 9 1020 954 115 13 7 chr1 57069211 57069360 -140126072 - B2_Mm2 SINE B2 -4 191 42 9 1020 1542 259 43 61 chr1 57069367 57069877 -140125555 + RLTR20B3 LTR ERVK 21 521 -56 1 1020 639 215 0 82 chr1 57069929 57070076 -140125356 - B1F2 SINE Alu -1 148 14 1 1020 239 281 0 17 chr1 57070093 57070151 -140125281 - MLT1L LTR MaLR -358 252 196 1 1020 258 325 94 78 chr1 57070576 57070756 -140124676 - MTEb LTR MaLR 0 379 197 1 1020 180 152 0 0 chr1 57070780 57070813 -140124619 + C-rich Low_complexity Low_complexity 5 37 0 1 1020 268 306 24 0 chr1 57070928 57071013 -140124419 - MTEa LTR MaLR -88 291 205 1 1020 288 137 0 0 chr1 57071015 57071066 -140124366 + (AGGGGG)n Simple_repeat Simple_repeat 2 52 0 1 1020 532 288 33 61 chr1 57071066 57071247 -140124185 - MTEa LTR MaLR -164 215 40 1 1020 699 201 0 0 chr1 57071248 57071397 -140124035 + T-rich Low_complexity Low_complexity 1 149 0 1 1020 12637 80 30 25 chr1 57071467 57072311 -140123121 - L1VL2 LINE L1 -630 2985 2152 1 1020 2068 85 14 3 chr1 57072311 57072606 -140122826 + L1_Mus3 LINE L1 6341 6638 0 1 1020 12637 81 21 39 chr1 57072606 57074473 -140120959 - L1VL2 LINE L1 -1464 2151 311 1 1020 239 291 101 0 chr1 57074473 57074552 -140120880 - MTEb LTR MaLR -288 91 5 1 1020 283 326 130 15 chr1 57074769 57074900 -140120532 + MER58A DNA MER1_type 51 196 -28 1 1020 886 169 197 6 chr1 57074945 57075123 -140120309 - B3 SINE B2 0 216 5 1 1020 1100 300 114 56 chr1 57075766 57076232 -140119200 + MER77 LTR ERVL 60 552 -55 1 1020 180 0 0 0 chr1 57077540 57077560 -140117872 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1 1020 986 94 14 0 chr1 57078767 57078905 -140116527 + B2_Mm1t SINE B2 1 140 -53 1 1020 309 238 31 16 chr1 57078915 57078979 -140116453 + RSINE1 SINE B4 64 128 -37 1 1020 334 333 24 0 chr1 57079577 57079745 -140115687 + (TATG)n Simple_repeat Simple_repeat 4 175 0 1 1020 388 304 147 12 chr1 57079809 57079979 -140115453 - B4 SINE B4 -98 194 2 1 1020 420 254 83 3 chr1 57080110 57080230 -140115202 - B1F SINE Alu -17 131 1 1 1020 495 251 62 72 chr1 57080456 57080649 -140114783 - B3A SINE B2 -6 192 2 1 1020 887 116 0 75 chr1 57081072 57081231 -140114201 + B1_Mur3 SINE Alu 3 149 0 1 1020 185 132 26 0 chr1 57081478 57081516 -140113916 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1020 373 298 121 40 chr1 57081516 57081970 -140113462 + L1_Mur3 LINE L1 1440 1930 -3950 1 1020 539 316 124 47 chr1 57082250 57082936 -140112496 + L1M2 LINE L1 2138 2876 -3267 1 1020 522 259 56 21 chr1 57082940 57083082 -140112350 + B1_Mur2 SINE Alu 3 149 0 1 1020 219 254 14 0 chr1 57083083 57083154 -140112278 + A-rich Low_complexity Low_complexity 4 75 0 1 1020 607 320 7 7 chr1 57083236 57083387 -140112045 + RSINE1 SINE B4 2 152 -13 1 1020 523 289 39 36 chr1 57083448 57083728 -140111704 + L1M2 LINE L1 4327 4607 -1536 1 1020 332 291 160 17 chr1 57085527 57085702 -140109730 + MER3 DNA MER1_type 10 209 0 1 1020 419 315 87 0 chr1 57086363 57086512 -140108920 + MER5B DNA MER1_type 4 165 -13 1 1020 264 111 0 0 chr1 57086755 57086800 -140108632 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1 1020 606 269 6 75 chr1 57086800 57086973 -140108459 - RSINE1 SINE B4 -3 162 2 1 1020 627 286 67 6 chr1 57087047 57087230 -140108202 + B3 SINE B2 1 184 -14 1 1020 365 336 9 18 chr1 57087278 57087390 -140108042 + PB1D10 SINE Alu 6 116 -1 1 1020 1494 195 166 3 chr1 57088756 57089114 -140106318 + MTD LTR MaLR 3 404 -15 1 1020 1145 214 23 79 chr1 57089465 57089777 -140105655 - MER102a DNA MER1_type -56 274 1 1 1020 254 308 159 35 chr1 57089816 57090005 -140105427 + L2b LINE L2 2973 3183 -192 1 1020 374 215 0 0 chr1 57090078 57090143 -140105289 + L2b LINE L2 3311 3375 0 1 1020 180 0 0 0 chr1 57090777 57090797 -140104635 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1020 21 0 0 0 chr1 57091238 57091259 -140104173 + AT_rich Low_complexity Low_complexity 1 21 0 1 1020 438 36 0 0 chr1 57091304 57091360 -140104072 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1020 375 295 32 16 chr1 57091930 57092054 -140103378 + CT-rich Low_complexity Low_complexity 2 127 0 1 1020 1161 100 0 0 chr1 57092056 57092226 -140103206 + (TTC)n Simple_repeat Simple_repeat 3 172 0 1 1020 434 33 17 0 chr1 57092226 57092286 -140103146 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1020 412 248 66 9 chr1 57092286 57092392 -140103040 - PB1D10 SINE Alu -5 112 1 1 1020 337 224 129 15 chr1 57092437 57092584 -140102848 + MER34A LTR ERV1 427 587 -35 1 1020 776 306 63 23 chr1 57092945 57093246 -140102186 - MLT1A0 LTR MaLR -52 313 1 1 1020 489 17 0 0 chr1 57093306 57093364 -140102068 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1020 278 67 22 0 chr1 57095916 57095961 -140099471 + (TTTTA)n Simple_repeat Simple_repeat 3 48 0 1 1020 33 18 0 51 chr1 57096284 57096343 -140099089 + AT_rich Low_complexity Low_complexity 1 56 0 1 1020 28 29 0 0 chr1 57096411 57096446 -140098986 + AT_rich Low_complexity Low_complexity 1 35 0 1 1020 360 0 0 0 chr1 57096580 57096620 -140098812 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1020 588 65 0 0 chr1 57096620 57096697 -140098735 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1020 210 158 0 0 chr1 57097894 57097932 -140097500 + T-rich Low_complexity Low_complexity 1 38 0 1 1020 604 304 110 15 chr1 57098487 57098895 -140096537 + L1ME3A LINE L1 5499 5945 -228 1 1020 491 213 193 71 chr1 57099053 57099250 -140096182 + RLTR17 LTR ERVK 105 325 -367 1 1020 843 177 159 0 chr1 57099713 57099945 -140095487 - Lx9 LINE L1 -1 7643 7375 1 1020 398 204 11 0 chr1 57102972 57103065 -140092367 + CT-rich Low_complexity Low_complexity 3 96 0 1 1020 236 185 0 24 chr1 57103079 57103137 -140092295 - PB1D10 SINE Alu -8 119 67 1 1020 934 298 18 25 chr1 57103487 57103773 -140091659 + B4 SINE B4 9 292 0 1 1020 231 133 0 0 chr1 57103776 57103821 -140091611 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1020 1025 289 24 21 chr1 57105464 57105754 -140089678 + MER57C2 LTR ERV1 44 334 -100 1 1020 547 219 85 58 chr1 57105785 57105974 -140089458 + B3A SINE B2 1 194 -4 1 1020 235 250 0 0 chr1 57106010 57106066 -140089366 - L1M5 LINE L1 -423 5756 5701 1 1020 402 304 148 4 chr1 57106168 57106412 -140089020 - B4A SINE B4 -12 280 2 1 1020 429 299 78 14 chr1 57106412 57106669 -140088763 - L1M5 LINE L1 -536 5706 5436 1 1020 519 264 129 21 chr1 57106695 57106881 -140088551 - B3 SINE B2 -10 206 1 1 1020 321 201 21 50 chr1 57106976 57107172 -140088260 + (TTTA)n Simple_repeat Simple_repeat 1 190 0 1 1020 324 309 63 36 chr1 57107235 57107537 -140087895 - L1MC LINE L1 -1906 4240 3931 1 1020 25 31 0 0 chr1 57107813 57107845 -140087587 + AT_rich Low_complexity Low_complexity 1 32 0 1 1020 226 379 65 46 chr1 57107845 57107953 -140087479 + L2b LINE L2 3242 3351 -24 1 1020 233 264 66 44 chr1 57108508 57108599 -140086833 - B1F SINE Alu -9 140 48 1 1020 23 0 0 0 chr1 57108688 57108711 -140086721 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 897 138 0 8 chr1 57108723 57108854 -140086578 - B3 SINE B2 -86 130 1 1 1020 977 230 19 19 chr1 57108975 57109183 -140086249 - B3 SINE B2 -6 210 3 1 1020 37 53 0 13 chr1 57109185 57109241 -140086191 + AT_rich Low_complexity Low_complexity 1 56 0 1 1020 674 241 7 7 chr1 57109241 57109383 -140086049 - B1_Mur1 SINE Alu -7 142 1 1 1020 37 53 0 13 chr1 57109383 57109402 -140086030 + AT_rich Low_complexity Low_complexity 1 19 0 1 1020 297 331 79 43 chr1 57110124 57110155 -140085277 + B4A SINE B4 58 226 -65 1 1020 590 160 83 53 chr1 57110155 57110287 -140085145 + B1_Mus2 SINE Alu 12 147 0 1 1020 459 296 28 53 chr1 57110738 57111014 -140084418 - L1MA5A LINE L1 -377 5920 5645 1 1020 2227 159 41 36 chr1 57111144 57111555 -140083877 + MTC LTR MaLR 1 413 -8 1 1020 355 211 133 0 chr1 57111606 57111696 -140083736 - B1F SINE Alu -24 125 24 1 1020 414 0 0 0 chr1 57112246 57112292 -140083140 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1020 192 77 0 0 chr1 57112292 57112318 -140083114 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1 1020 736 161 80 7 chr1 57112333 57112471 -140082961 - B1_Mus1 SINE Alu 0 148 1 1 1020 23 0 0 0 chr1 57112478 57112501 -140082931 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 255 359 104 7 chr1 57112599 57112753 -140082679 + MIR SINE MIR 83 251 -11 1 1020 198 0 0 0 chr1 57112806 57112828 -140082604 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1020 482 327 27 0 chr1 57113805 57113955 -140081477 - RSINE1 SINE B4 -6 159 6 1 1020 181 299 70 61 chr1 57115216 57115330 -140080102 + MIRb SINE MIR 66 180 -88 1 1020 258 306 216 41 chr1 57116958 57117203 -140078229 + B4A SINE B4 1 288 -4 1 1020 532 187 0 45 chr1 57117639 57117751 -140077681 - B2_Mm2 SINE B2 -88 107 1 1 1020 24 0 0 0 chr1 57117755 57117779 -140077653 + AT_rich Low_complexity Low_complexity 1 24 0 1 1020 2671 84 22 0 chr1 57117787 57118144 -140077288 - L1_Mus3 LINE L1 0 6638 6274 1 1020 699 87 0 0 chr1 57118146 57118250 -140077182 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1020 282 297 108 0 chr1 57118250 57118361 -140077071 - RSINE1 SINE B4 -40 125 3 1 1020 25 0 0 0 chr1 57118875 57118900 -140076532 + AT_rich Low_complexity Low_complexity 1 25 0 1 1020 294 319 121 0 chr1 57120014 57120171 -140075261 + MER2 DNA MER2_type 8 183 -162 1 1020 256 361 0 0 chr1 57120193 57120276 -140075156 + MER2 DNA MER2_type 238 320 -25 1 1020 237 222 0 0 chr1 57120552 57120615 -140074817 + GA-rich Low_complexity Low_complexity 3 65 0 1 1020 39940 33 0 0 chr1 57121141 57126554 -140068878 - L1Md_T LINE L1 0 6582 1170 1 1020 5732 155 33 39 chr1 57126560 57127709 -140067723 - L1Md_T LINE L1 -5411 1205 99 1 1020 318 307 108 33 chr1 57127815 57128027 -140067405 - Lx8 LINE L1 -2 7471 7244 1 1020 295 283 220 0 chr1 57128052 57128211 -140067221 + Lx8 LINE L1 7278 7471 -2 2 1020 386 287 32 22 chr1 57129087 57129146 -140066286 - B2_Mm2 SINE B2 -8 187 130 2 1020 1011 114 0 0 chr1 57129146 57129321 -140066111 + (TG)n Simple_repeat Simple_repeat 1 175 0 2 1020 386 287 32 22 chr1 57129321 57129334 -140066098 - B2_Mm2 SINE B2 -66 129 117 2 1020 423 52 0 0 chr1 57129334 57129392 -140066040 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1020 388 245 32 3 chr1 57129392 57129503 -140065929 - B3A SINE B2 -79 116 1 2 1020 387 321 90 0 chr1 57130503 57130715 -140064717 - L1MC4a LINE L1 -1945 5937 5707 2 1020 1966 56 4 4 chr1 57130749 57130998 -140064434 - L1_Mus2 LINE L1 0 6566 6318 2 1020 321 298 32 0 chr1 57131399 57131493 -140063939 + PB1D10 SINE Alu 1 97 -20 2 1020 198 0 0 0 chr1 57131502 57131524 -140063908 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1020 687 84 0 0 chr1 57131816 57131911 -140063521 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 2 1020 216 0 0 0 chr1 57131912 57131936 -140063496 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 2 1020 836 192 165 5 chr1 57132120 57132314 -140063118 - URR1B DNA MER1_type 0 225 1 2 1020 324 0 0 0 chr1 57132318 57132354 -140063078 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1020 29 0 0 62 chr1 57132393 57132441 -140062991 + AT_rich Low_complexity Low_complexity 1 45 0 2 1020 235 299 58 58 chr1 57132462 57132565 -140062867 - B3A SINE B2 -27 171 69 2 1020 183 42 0 0 chr1 57133353 57133377 -140062055 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1020 435 162 0 0 chr1 57134038 57134118 -140061314 + C-rich Low_complexity Low_complexity 1 80 0 2 1020 247 0 51 26 chr1 57134285 57134324 -140061108 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1020 217 100 40 0 chr1 57138148 57138198 -140057234 + (TCTCCC)n Simple_repeat Simple_repeat 1 52 0 2 1020 367 244 40 11 chr1 57139044 57139218 -140056214 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1020 405 0 0 0 chr1 57139244 57139289 -140056143 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1020 216 0 0 0 chr1 57139290 57139314 -140056118 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1020 524 150 67 8 chr1 57142826 57142960 -140052472 + Lx9 LINE L1 7468 7609 -35 2 1020 409 131 13 0 chr1 57143730 57143892 -140051540 + (CA)n Simple_repeat Simple_repeat 1 164 0 2 1020 313 132 0 0 chr1 57143906 57143959 -140051473 + HAL1-3A_ME LINE L1 1976 2028 -830 2 1020 22 35 0 0 chr1 57144001 57144030 -140051402 + AT_rich Low_complexity Low_complexity 1 29 0 2 1020 911 112 25 0 chr1 57144100 57144261 -140051171 + (GA)n Simple_repeat Simple_repeat 1 165 0 2 1020 226 184 18 9 chr1 57144327 57144432 -140051000 + CT-rich Low_complexity Low_complexity 1 105 0 2 1020 280 325 101 5 chr1 57145427 57145616 -140049816 - LTR33A_ LTR ERVL -9 522 316 2 1020 790 188 177 0 chr1 57145825 57146017 -140049415 + URR1A DNA MER1_type 1 226 0 2 1020 369 265 49 0 chr1 57146751 57146855 -140048577 + PB1D7 SINE Alu 5 116 -4 2 127 486 250 9 0 chr1 57147299 57147411 -140048021 - RSINE1 SINE B4 -43 122 10 2 1021 434 294 41 32 chr1 57147545 57147705 -140047727 + MLT1A LTR MaLR 194 448 -19 2 1021 252 338 14 0 chr1 57148220 57148294 -140047138 + ID4 SINE ID 1 75 -8 2 1021 805 124 6 11 chr1 57148294 57148474 -140046958 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1021 222 218 18 0 chr1 57148474 57148529 -140046903 + (CAGAGA)n Simple_repeat Simple_repeat 1 56 0 2 1021 392 298 64 101 chr1 57148679 57149037 -140046395 + ORR1E LTR MaLR 1 345 -14 2 1021 277 225 216 0 chr1 57150122 57150233 -140045199 + MIR SINE MIR 48 182 -80 2 1021 489 160 27 14 chr1 57151564 57151710 -140043722 + (TG)n Simple_repeat Simple_repeat 1 148 0 2 1021 290 196 20 20 chr1 57151791 57151890 -140043542 + (TATG)n Simple_repeat Simple_repeat 3 101 0 2 1021 279 0 0 0 chr1 57154673 57154704 -140040728 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1021 399 353 25 6 chr1 57157741 57157898 -140037534 - MER58B DNA MER1_type -5 336 177 2 1021 373 257 29 70 chr1 57158550 57158730 -140036702 + MLT1A0 LTR MaLR 42 209 -165 2 1021 1240 27 0 7 chr1 57159244 57159392 -140036040 + B1_Mus2 SINE Alu 1 147 0 2 1021 227 260 0 0 chr1 57159457 57159507 -140035925 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1021 180 0 0 0 chr1 57160015 57160035 -140035397 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1021 276 111 0 0 chr1 57160249 57160294 -140035138 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2 1021 1397 246 155 20 chr1 57162737 57163298 -140032134 + Lx6 LINE L1 6455 7460 0 2 1021 997 231 117 4 chr1 57163460 57163708 -140031724 - B4A SINE B4 -16 276 1 2 1021 1689 218 78 3 chr1 57165191 57165578 -140029854 + MTD LTR MaLR 4 419 0 2 1021 525 297 86 75 chr1 57165578 57165625 -140029807 + MTD-int LTR MaLR 1 62 -1196 2 1021 528 45 0 0 chr1 57165625 57165692 -140029740 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1021 525 297 86 75 chr1 57165692 57165837 -140029595 + MTD-int LTR MaLR 63 208 -1050 2 1021 3617 10 2 0 chr1 57165837 57166232 -140029200 - MTA_Mm LTR MaLR 0 396 1 2 1021 9354 22 13 7 chr1 57166232 57166638 -140028794 - MTA_Mm-int LTR MaLR 0 1098 700 2 1021 234 0 0 0 chr1 57166638 57166664 -140028768 + (CTG)n Simple_repeat Simple_repeat 2 27 0 2 1021 9354 22 13 7 chr1 57166664 57167349 -140028083 - MTA_Mm-int LTR MaLR -399 699 2 2 1021 3483 15 2 22 chr1 57167349 57167753 -140027679 - MTA_Mm LTR MaLR 0 396 1 2 1021 2477 203 98 118 chr1 57167804 57168740 -140026692 + MTD-int LTR MaLR 341 1258 0 2 1021 854 215 10 30 chr1 57168740 57168937 -140026495 + MTD LTR MaLR 1 193 -228 2 1021 650 35 0 22 chr1 57168933 57169022 -140026410 + B1_Mus2 SINE Alu 61 147 0 2 1021 599 214 14 0 chr1 57169022 57169167 -140026265 + GA-rich Low_complexity Low_complexity 1 147 0 2 1021 1009 194 38 5 chr1 57169169 57169381 -140026051 + MTD LTR MaLR 196 414 -5 2 1021 266 234 343 9 chr1 57169382 57169490 -140025942 + MIR SINE MIR 121 268 0 2 1021 419 52 17 0 chr1 57169707 57169765 -140025667 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1021 625 317 29 57 chr1 57169792 57170036 -140025396 + B4 SINE B4 56 292 0 2 1021 363 290 0 0 chr1 57170038 57170200 -140025232 + (CA)n Simple_repeat Simple_repeat 1 162 0 2 1021 201 176 0 0 chr1 57171526 57171560 -140023872 + T-rich Low_complexity Low_complexity 2 35 0 2 1021 939 243 105 97 chr1 57171659 57172032 -140023400 + Lx8 LINE L1 7076 7451 -22 2 1021 453 36 0 0 chr1 57173757 57173812 -140021620 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1021 420 300 96 40 chr1 57173846 57174083 -140021349 + B4A SINE B4 25 290 -2 2 1021 753 140 21 0 chr1 57174214 57174357 -140021075 + L1_Mus3 LINE L1 6492 6637 -1 2 1021 391 194 0 0 chr1 57174358 57174430 -140021002 - L1_Mur3 LINE L1 -1654 4226 4155 2 1021 22 0 0 0 chr1 57174430 57174452 -140020980 + AT_rich Low_complexity Low_complexity 1 22 0 2 1021 201 74 0 0 chr1 57174462 57174489 -140020943 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1021 767 188 21 0 chr1 57175878 57176022 -140019410 + B1_Mus1 SINE Alu 1 147 -1 2 1021 426 20 0 0 chr1 57178648 57178699 -140016733 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1021 230 258 63 16 chr1 57180666 57180729 -140014703 - MIR SINE MIR -87 121 56 2 1021 667 236 181 21 chr1 57180784 57181022 -140014410 + MTD LTR MaLR 144 419 0 2 1021 300 148 0 0 chr1 57181107 57181168 -140014264 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1021 390 365 45 24 chr1 57182945 57183192 -140012240 + L3b LINE CR1 4 255 -227 2 1021 186 71 0 0 chr1 57183526 57183554 -140011878 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1021 188 270 132 22 chr1 57184798 57184889 -140010543 + MIRm SINE MIR 22 122 -154 2 1021 512 216 117 23 chr1 57184949 57185120 -140010312 + MER20 DNA MER1_type 30 216 -3 2 1021 246 306 107 0 chr1 57185162 57185283 -140010149 + MER5B DNA MER1_type 36 169 -9 2 1021 907 285 91 56 chr1 57186189 57186728 -140008704 - L1MA9 LINE L1 -1 6515 5958 2 1021 247 253 12 60 chr1 57186839 57186923 -140008509 - L1MA9 LINE L1 -809 5707 5628 2 1021 530 29 15 0 chr1 57186933 57187001 -140008431 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1021 298 174 57 14 chr1 57187034 57187104 -140008328 - RSINE1 SINE B4 -38 127 55 2 1021 285 135 0 0 chr1 57187306 57187358 -140008074 + (CAG)n Simple_repeat Simple_repeat 2 53 0 2 1021 561 260 421 0 chr1 57187840 57188126 -140007306 - L1MA9 LINE L1 -1228 5116 4710 2 1021 2021 218 16 44 chr1 57188148 57188648 -140006784 + RMER19C LTR ERVK 126 611 0 2 1021 537 248 46 28 chr1 57188648 57188864 -140006568 - L1MA9 LINE L1 -1631 4716 4497 2 1021 330 261 42 32 chr1 57188908 57189003 -140006429 - MTD LTR MaLR -321 98 3 2 1021 483 353 69 39 chr1 57189114 57189439 -140005993 - L1MA9 LINE L1 -5843 438 100 2 1021 1103 82 0 0 chr1 57189439 57189585 -140005847 - B1_Mus1 SINE Alu -2 146 1 2 1021 483 353 69 39 chr1 57189585 57189648 -140005784 - L1MA9 LINE L1 -6182 99 38 2 1021 1171 68 7 0 chr1 57190001 57190147 -140005285 + B1_Mus1 SINE Alu 2 148 0 2 1021 358 350 62 18 chr1 57190793 57191247 -140004185 - L1M5 LINE L1 -393 5780 5307 2 1021 444 308 21 49 chr1 57191430 57191640 -140003792 - B4 SINE B4 -81 211 2 2 1021 330 186 0 0 chr1 57191702 57191788 -140003644 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1021 233 275 42 52 chr1 57191788 57191884 -140003548 - B3A SINE B2 -12 186 92 2 1021 238 146 0 0 chr1 57191861 57191902 -140003530 - B2_Mm2 SINE B2 -154 41 1 2 1021 30 27 0 0 chr1 57192061 57192098 -140003334 + AT_rich Low_complexity Low_complexity 1 37 0 2 1021 1135 30 0 0 chr1 57192155 57192286 -140003146 + B1_Mus2 SINE Alu 5 135 -12 2 1021 257 0 0 29 chr1 57192286 57192320 -140003112 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1021 472 162 19 0 chr1 57192412 57192517 -140002915 + CT-rich Low_complexity Low_complexity 4 110 0 2 1021 231 387 7 7 chr1 57192656 57192799 -140002633 - L1M5 LINE L1 -1165 4981 4839 2 1021 276 372 22 11 chr1 57193004 57193186 -140002246 - L2 LINE L2 -544 2875 2692 2 1021 6371 183 57 13 chr1 57193191 57195189 -140000243 - Lx7 LINE L1 -949 6747 4660 2 1021 35 54 0 0 chr1 57195190 57195246 -140000186 + AT_rich Low_complexity Low_complexity 1 56 0 2 1021 265 140 0 0 chr1 57195251 57195301 -140000131 - Lx7 LINE L1 -1212 4668 4619 2 1021 460 157 1 58 chr1 57195302 57195418 -140000014 - ORR1B2 LTR MaLR -235 149 43 2 1021 2426 171 51 62 chr1 57195419 57195985 -139999447 - RLTR20B2 LTR ERVK 0 560 1 2 1021 433 76 15 0 chr1 57195985 57196051 -139999381 - ORR1B2 LTR MaLR -317 67 1 2 1021 9957 175 48 15 chr1 57196051 57197586 -139997846 - Lx7 LINE L1 -2215 3665 2082 2 1021 324 0 0 0 chr1 57197586 57197622 -139997810 + (TGG)n Simple_repeat Simple_repeat 3 38 0 2 1021 9957 175 48 15 chr1 57197622 57198185 -139997247 - Lx7 LINE L1 -3799 2081 1490 2 1021 423 0 0 0 chr1 57198185 57198232 -139997200 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1021 9957 175 48 15 chr1 57198232 57198271 -139997161 - Lx7 LINE L1 -4391 1489 1458 2 1021 342 224 0 0 chr1 57198272 57198339 -139997093 - B3 SINE B2 -121 95 29 3 1021 327 247 0 0 chr1 57198360 57198437 -139996995 - L1M3 LINE L1 -445 5738 5662 3 1021 240 111 0 0 chr1 57198441 57198477 -139996955 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1021 362 295 123 0 chr1 57198481 57198603 -139996829 - RSINE1 SINE B4 -25 140 4 3 1021 240 272 43 21 chr1 57198843 57198937 -139996495 - ORR1E LTR MaLR -5 374 279 3 1021 388 242 94 58 chr1 57199025 57199196 -139996236 - ORR1E LTR MaLR -182 177 1 3 1021 405 0 0 0 chr1 57199864 57199909 -139995523 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1021 24 67 0 0 chr1 57200214 57200259 -139995173 + AT_rich Low_complexity Low_complexity 1 45 0 3 1021 587 248 247 22 chr1 57200479 57200756 -139994676 - MTE2b LTR MaLR -21 358 19 3 1021 735 71 0 0 chr1 57200799 57200897 -139994535 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 3 1021 820 237 39 67 chr1 57201125 57201410 -139994022 + MER121 Unknown Unknown 3 279 -133 3 1021 306 233 43 22 chr1 57202026 57202118 -139993314 - RSINE1 SINE B4 -54 111 18 3 1021 540 152 0 0 chr1 57202929 57203028 -139992404 + GA-rich Low_complexity Low_complexity 1 99 0 3 1021 242 67 0 0 chr1 57203028 57203058 -139992374 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 3 1021 1072 107 6 17 chr1 57203058 57203238 -139992194 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1021 324 301 10 10 chr1 57203439 57203543 -139991889 + L1MA6 LINE L1 6197 6300 0 3 1021 484 239 28 0 chr1 57205082 57205191 -139990241 - B3A SINE B2 -86 112 1 3 1021 363 280 57 64 chr1 57205384 57205525 -139989907 + B3A SINE B2 52 191 -7 3 1021 543 330 24 14 chr1 57206655 57206867 -139988565 + MER121 Unknown Unknown 26 239 -173 3 1021 26 0 0 0 chr1 57207487 57207513 -139987919 + AT_rich Low_complexity Low_complexity 1 26 0 3 1021 342 263 119 8 chr1 57209594 57209728 -139985704 - MLT1F LTR MaLR -9 539 391 3 1021 440 94 118 0 chr1 57210276 57210361 -139985071 - ID_B1 SINE B4 -8 216 122 3 1021 264 149 0 0 chr1 57210361 57210408 -139985024 + (TCC)n Simple_repeat Simple_repeat 2 48 0 3 1021 468 154 0 0 chr1 57210399 57210503 -139984929 + CT-rich Low_complexity Low_complexity 2 105 0 3 1021 1244 48 0 0 chr1 57210503 57210650 -139984782 - B1_Mm SINE Alu 0 147 1 3 1021 546 252 23 8 chr1 57210650 57210782 -139984650 - ID_B1 SINE B4 -89 135 2 3 1021 620 244 16 33 chr1 57211018 57211200 -139984232 - B3A SINE B2 -17 181 3 3 1021 676 78 0 29 chr1 57211319 57211424 -139984008 + B2_Mm1t SINE B2 85 186 -7 3 1021 529 138 3 3 chr1 57211461 57211559 -139983873 + B1_Mus2 SINE Alu 2 99 -50 3 1021 585 286 42 42 chr1 57211609 57211802 -139983630 + B3A SINE B2 3 195 -3 3 1021 1021 73 36 0 chr1 57212403 57212540 -139982892 + B1_Mus1 SINE Alu 2 143 -5 3 1021 383 329 1 12 chr1 57213526 57213654 -139981778 - B1F1 SINE Alu -21 126 2 3 1021 499 344 67 20 chr1 57213746 57214001 -139981431 - MLT1J LTR MaLR -147 365 99 3 1021 251 157 20 0 chr1 57214212 57214263 -139981169 - Lx8 LINE L1 -2 7471 7420 3 1021 272 299 135 18 chr1 57215617 57215787 -139979645 + L3 LINE CR1 2528 2717 -1772 3 1021 187 244 0 0 chr1 57215879 57215920 -139979512 + L3 LINE CR1 2843 2883 -1606 3 1021 238 336 22 84 chr1 57217555 57217828 -139977604 - L1M6 LINE L1 -4198 2298 2043 3 1021 502 32 0 0 chr1 57217965 57218028 -139977404 + L1_Mus2 LINE L1 6502 6564 -2 3 1021 411 252 70 16 chr1 57218469 57218598 -139976834 + B1F SINE Alu 2 137 -12 3 1021 201 108 0 0 chr1 57218600 57218637 -139976795 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1021 420 20 0 0 chr1 57218637 57218686 -139976746 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1021 415 310 45 6 chr1 57218845 57219001 -139976431 + RSINE1 SINE B4 2 163 -2 3 1021 360 0 0 0 chr1 57219168 57219208 -139976224 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1021 1078 257 31 78 chr1 57219313 57219697 -139975735 + MLT2D LTR ERVL 1 366 -48 3 1021 396 335 94 80 chr1 57221060 57221410 -139974022 - ORR1E LTR MaLR -2 357 3 3 1021 388 303 57 13 chr1 57221725 57221882 -139973550 + B3A SINE B2 2 165 -33 3 1021 198 0 0 0 chr1 57221892 57221914 -139973518 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1021 1158 204 9 13 chr1 57222087 57222311 -139973121 + Lx7 LINE L1 7125 7347 -349 3 1021 23 68 0 0 chr1 57222317 57222361 -139973071 + AT_rich Low_complexity Low_complexity 1 44 0 3 1021 560 132 152 23 chr1 57222391 57222562 -139972870 + Lx7 LINE L1 7365 7557 -139 3 1021 670 279 132 47 chr1 57222594 57223080 -139972352 + L1MB7 LINE L1 5345 5871 -313 3 1021 23 33 0 0 chr1 57223175 57223205 -139972227 + AT_rich Low_complexity Low_complexity 1 30 0 3 1021 343 326 0 11 chr1 57223310 57223403 -139972029 - PB1D10 SINE Alu -12 105 14 3 1021 369 0 0 0 chr1 57223720 57223761 -139971671 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1021 377 153 271 0 chr1 57226434 57226519 -139968913 + PB1D9 SINE Alu 1 108 -12 3 1021 275 254 0 31 chr1 57226550 57226615 -139968817 + polypurine Low_complexity Low_complexity 3 65 0 3 1021 1335 63 0 0 chr1 57226615 57226789 -139968643 + (GAA)n Simple_repeat Simple_repeat 3 176 0 3 1021 1171 48 0 0 chr1 57226889 57227034 -139968398 + L1_Mus1 LINE L1 6423 6567 0 3 1021 639 203 0 19 chr1 57227736 57227953 -139967479 + CT-rich Low_complexity Low_complexity 1 212 0 3 1021 1112 96 0 0 chr1 57228390 57228536 -139966896 + B1_Mus1 SINE Alu 3 148 0 3 1021 4548 39 0 15 chr1 57229807 57230352 -139965080 + L1Md_F2 LINE L1 6018 6554 -28 3 1021 323 60 20 0 chr1 57230352 57230402 -139965030 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1021 620 233 132 0 chr1 57232794 57232953 -139962479 + B3A SINE B2 1 180 -18 3 1021 217 244 0 0 chr1 57232954 57232995 -139962437 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 1021 234 0 0 0 chr1 57233203 57233229 -139962203 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1021 465 258 14 9 chr1 57233982 57234105 -139961327 + L1VL1 LINE L1 144 275 -6147 3 1021 12850 127 21 4 chr1 57234232 57236828 -139958604 + L1Md_F LINE L1 525 3158 -2725 3 1021 16681 80 9 1 chr1 57236831 57239751 -139955681 + L1Md_A LINE L1 413 3360 -2523 3 1021 236 267 33 0 chr1 57239761 57239821 -139955611 + L1MC4 LINE L1 657 718 -5497 3 1021 528 292 40 18 chr1 57240390 57240662 -139954770 - L1MEf LINE L1 -2610 3536 3259 3 1021 228 216 0 0 chr1 57240686 57240737 -139954695 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1021 242 230 29 20 chr1 57240980 57241082 -139954350 - L1MEf LINE L1 -4900 1342 1240 3 1021 868 248 15 0 chr1 57241441 57241647 -139953785 - B3 SINE B2 -6 210 2 3 1021 251 268 24 35 chr1 57243034 57243119 -139952313 - Tigger7 DNA MER2_type -2118 373 290 3 1021 406 289 15 52 chr1 57243214 57243349 -139952083 - Tigger7 DNA MER2_type -2359 132 3 3 1021 543 288 83 88 chr1 57243784 57244241 -139951191 - MLT1C LTR MaLR -12 455 1 3 1021 1430 71 16 11 chr1 57244387 57244573 -139950859 - B2_Mm2 SINE B2 -8 187 1 3 1021 275 257 9 19 chr1 57245360 57245467 -139949965 + HAL1 LINE L1 2244 2349 -158 3 1021 1003 270 55 62 chr1 57245604 57246026 -139949406 + MER57F LTR ERV1 18 436 0 3 1021 256 293 13 13 chr1 57246518 57246594 -139948838 - ID2 SINE ID 0 83 8 3 1021 269 229 99 0 chr1 57246976 57247080 -139948352 - MIR SINE MIR -84 184 66 3 1021 360 64 0 0 chr1 57247992 57248039 -139947393 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1021 324 0 0 0 chr1 57248201 57248237 -139947195 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1021 192 77 0 0 chr1 57248237 57248262 -139947170 + (CG)n Simple_repeat Simple_repeat 2 27 0 3 1021 1268 171 0 47 chr1 57249624 57249857 -139945575 + URR1B DNA MER1_type 1 222 -3 3 1021 1157 239 161 16 chr1 57249917 57250281 -139945151 - MTD LTR MaLR -2 417 1 3 1021 2164 142 6 8 chr1 57251378 57251733 -139943699 + ORR1B1 LTR MaLR 41 394 0 3 1021 14830 55 2 2 chr1 57252898 57255456 -139939976 - L1Md_F2 LINE L1 -1 6581 4026 3 1021 429 109 0 0 chr1 57255700 57255764 -139939668 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1021 353 278 83 31 chr1 57256310 57256503 -139938929 + MER5C DNA MER1_type 21 223 -90 3 1021 560 275 114 5 chr1 57260127 57260328 -139935104 + ID_B1 SINE B4 2 224 0 3 1021 521 359 10 0 chr1 57260349 57260432 -139935000 + B4A SINE B4 2 86 -206 3 1021 290 326 35 49 chr1 57260432 57260574 -139934858 + B1F2 SINE Alu 1 140 -9 3 1021 271 97 0 89 chr1 57261516 57261595 -139933837 + CT-rich Low_complexity Low_complexity 4 75 0 3 1021 189 0 0 0 chr1 57263231 57263252 -139932180 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 3 1021 181 140 23 23 chr1 57263917 57263961 -139931471 + GA-rich Low_complexity Low_complexity 6 49 0 3 1021 244 356 72 60 chr1 57264122 57264373 -139931059 + Tigger7 DNA MER2_type 54 307 -2184 3 1021 823 287 31 8 chr1 57264373 57264629 -139930803 + Tigger7 DNA MER2_type 2132 2393 -98 3 1021 184 345 107 13 chr1 57265774 57265924 -139929508 - MIR SINE MIR -1 261 98 3 1021 369 0 0 0 chr1 57267122 57267163 -139928269 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1021 589 257 136 34 chr1 57267346 57267700 -139927732 + MLT1B LTR MaLR 1 390 0 3 1021 519 210 50 8 chr1 57268113 57268233 -139927199 - L2a LINE L2 0 3426 3302 3 1021 270 0 0 0 chr1 57268697 57268727 -139926705 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1021 225 0 0 0 chr1 57269013 57269038 -139926394 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1021 450 0 0 0 chr1 57269989 57270039 -139925393 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1021 457 283 19 44 chr1 57270039 57270198 -139925234 - MER121 Unknown Unknown -188 224 70 3 1021 384 203 110 31 chr1 57272700 57272827 -139922605 - MLT1A1 LTR MaLR -271 137 1 4 1021 3746 149 52 10 chr1 57273382 57274101 -139921331 + RMER6A LTR ERVK 1 749 -7 4 1021 252 299 20 30 chr1 57274627 57274727 -139920705 + MIRc SINE MIR 105 203 -65 4 1021 298 273 36 79 chr1 57275890 57276029 -139919403 + MLT2B4 LTR ERVL 26 158 -398 4 1021 1466 191 78 12 chr1 57276334 57276492 -139918940 + ORR1D1 LTR MaLR 4 164 -210 4 1021 561 30 0 0 chr1 57276492 57276559 -139918873 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1021 1466 191 78 12 chr1 57276559 57276744 -139918688 + ORR1D1 LTR MaLR 165 369 -5 4 1021 234 0 0 0 chr1 57277252 57277278 -139918154 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1021 207 0 0 0 chr1 57277605 57277628 -139917804 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1022 275 318 89 13 chr1 57279123 57279249 -139916183 + MIRb SINE MIR 3 135 -73 4 1022 216 152 0 0 chr1 57279250 57279283 -139916149 + C-rich Low_complexity Low_complexity 3 35 0 4 1022 274 123 35 0 chr1 57279283 57279340 -139916092 + CT-rich Low_complexity Low_complexity 3 61 0 4 1022 235 98 0 47 chr1 57279370 57279413 -139916019 - Lx4B LINE L1 -4 7054 7014 4 1022 384 22 0 0 chr1 57279459 57279504 -139915928 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1022 1037 91 13 0 chr1 57279545 57279699 -139915733 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 4 1022 594 213 90 0 chr1 57279699 57279821 -139915611 - B1_Mur1 SINE Alu -12 137 5 4 1022 256 344 43 21 chr1 57279874 57280061 -139915371 + MIR SINE MIR 37 227 -35 4 1022 306 0 0 0 chr1 57280385 57280419 -139915013 + (G)n Simple_repeat Simple_repeat 1 34 0 4 1022 478 335 34 15 chr1 57280916 57281122 -139914310 - MLT1I LTR MaLR -129 282 73 4 1022 287 314 120 8 chr1 57282678 57282803 -139912629 + MER5A DNA MER1_type 48 186 -3 4 1022 492 129 0 29 chr1 57282828 57282932 -139912500 + GA-rich Low_complexity Low_complexity 3 103 0 4 1022 937 227 69 0 chr1 57283095 57283298 -139912134 + ID_B1 SINE B4 2 218 -6 4 1022 26 0 0 0 chr1 57283298 57283324 -139912108 + AT_rich Low_complexity Low_complexity 1 26 0 4 1022 358 225 56 0 chr1 57284750 57284821 -139910611 + ID4_ SINE ID 3 77 -6 4 1022 826 207 51 11 chr1 57284762 57284823 -139910609 + ID SINE ID 20 87 -137 4 1022 243 301 38 101 chr1 57284823 57284982 -139910450 + B1_Mur3 SINE Alu 1 149 0 4 1022 340 264 0 42 chr1 57284991 57285086 -139910346 + PB1D10 SINE Alu 1 91 -26 4 1022 468 51 0 0 chr1 57285135 57285194 -139910238 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1022 342 0 0 0 chr1 57285195 57285233 -139910199 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1022 1133 68 0 20 chr1 57285517 57285666 -139909766 - B1_Mus2 SINE Alu 0 147 2 4 1022 242 339 173 11 chr1 57286032 57286211 -139909221 + LTR40a LTR ERVL 235 499 -20 4 1022 261 0 0 0 chr1 57286395 57286424 -139909008 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1022 369 0 0 0 chr1 57286705 57286746 -139908686 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1022 5263 203 80 44 chr1 57286798 57286915 -139908517 - Lx9 LINE L1 -9 7635 7517 4 1022 234 0 0 0 chr1 57286915 57286941 -139908491 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1022 5263 210 78 45 chr1 57286941 57288183 -139907249 - Lx9 LINE L1 -128 7516 6114 4 1022 2706 44 0 0 chr1 57288183 57288504 -139906928 + L1_Mus1 LINE L1 6247 6567 0 4 1022 9093 210 34 100 chr1 57288504 57290538 -139904894 - Lx9 LINE L1 -1360 6113 4133 4 1022 940 61 3 14 chr1 57290538 57290677 -139904755 - B1_Mus1 SINE Alu 0 148 9 4 1022 9093 210 34 100 chr1 57290677 57291510 -139903922 - Lx9 LINE L1 -1360 4132 3320 4 1022 6983 144 93 14 chr1 57291520 57292750 -139902682 - Lx2B LINE L1 -7 6993 5667 4 1022 1253 201 36 36 chr1 57292762 57293123 -139902309 - Lx9 LINE L1 -2518 3329 2969 4 1022 5097 148 47 27 chr1 57293118 57294124 -139901308 - Lx9 LINE L1 -3499 2348 1323 4 1022 324 0 0 0 chr1 57294583 57294619 -139900813 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1022 283 325 94 69 chr1 57294810 57295012 -139900420 + ORR1E LTR MaLR 21 227 -132 4 1022 311 304 67 37 chr1 57295760 57295924 -139899508 + L1MC1 LINE L1 6072 6240 -93 4 1022 714 218 0 14 chr1 57296112 57296256 -139899176 + B1_Mus1 SINE Alu 3 144 -4 4 1022 295 266 0 12 chr1 57296257 57296337 -139899095 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 1022 7235 115 17 4 chr1 57296407 57297531 -139897901 + Lx2 LINE L1 5488 6643 -354 4 1022 1436 104 54 0 chr1 57297522 57297743 -139897689 + Lx2 LINE L1 6765 6997 0 4 1022 23 33 0 0 chr1 57297757 57297787 -139897645 + AT_rich Low_complexity Low_complexity 1 30 0 4 1022 245 292 89 11 chr1 57298884 57298974 -139896458 + MLT1A1 LTR MaLR 167 263 -145 4 1022 347 261 69 8 chr1 57299335 57299466 -139895966 - RMER15 LTR ERVL -15 560 422 4 1022 366 365 85 33 chr1 57301762 57302091 -139893341 - HERV16-int LTR ERVL -2162 2834 2489 4 1022 347 363 35 35 chr1 57302422 57302733 -139892699 - HERV16-int LTR ERVL -3551 2163 1853 4 1022 764 192 76 20 chr1 57303618 57303815 -139891617 - ORR1D1 LTR MaLR -1 373 166 4 1022 557 49 9 55 chr1 57303816 57303925 -139891507 + (CAGAGA)n Simple_repeat Simple_repeat 2 105 0 4 1022 379 184 343 29 chr1 57303925 57304065 -139891367 - ORR1D1 LTR MaLR -185 189 6 4 1022 348 281 83 143 chr1 57304721 57304987 -139890445 - MLT2D LTR ERVL -164 250 1 4 1022 288 324 77 33 chr1 57305075 57305257 -139890175 - LTR52 LTR ERVL -221 200 11 4 1022 253 305 0 0 chr1 57305316 57305375 -139890057 + B4A SINE B4 5 63 -229 4 1022 7627 153 37 37 chr1 57305409 57306909 -139888523 + Lx5 LINE L1 5519 7036 -14 4 1022 216 0 0 0 chr1 57306909 57306933 -139888499 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 4 1022 674 259 77 26 chr1 57306948 57307142 -139888290 + B4A SINE B4 89 292 0 4 1022 3783 36 0 0 chr1 57307684 57308126 -139887306 + L1Md_F3 LINE L1 6129 6570 -14 4 1022 273 29 0 0 chr1 57308320 57308354 -139887078 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 4 1022 265 233 21 72 chr1 57308994 57309013 -139886419 + ID_B1 SINE B4 74 165 -59 4 1022 297 240 13 39 chr1 57309013 57309091 -139886341 + PB1D10 SINE Alu 9 84 -33 4 1022 308 340 30 0 chr1 57309974 57310074 -139885358 - ERVL-E-int LTR ERVL -1509 4158 4056 4 1022 870 238 103 20 chr1 57310556 57310718 -139884714 + MTD LTR MaLR 18 195 -224 4 1022 252 0 0 0 chr1 57310718 57310746 -139884686 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4 1022 870 269 94 11 chr1 57310746 57310916 -139884516 + MTD LTR MaLR 196 405 -14 4 1022 26 30 0 0 chr1 57311090 57311123 -139884309 + AT_rich Low_complexity Low_complexity 1 33 0 4 1022 408 311 19 45 chr1 57311499 57311654 -139883778 - B4A SINE B4 -129 163 13 4 1022 597 312 119 33 chr1 57311771 57312312 -139883120 - MLT1D LTR MaLR -1 626 18 4 1022 840 305 24 31 chr1 57312372 57312666 -139882766 + B4A SINE B4 1 292 0 4 1022 780 11 0 0 chr1 57312674 57312763 -139882669 + (TC)n Simple_repeat Simple_repeat 1 89 0 4 1022 4876 61 39 0 chr1 57313139 57313762 -139881670 + L1Md_F2 LINE L1 5936 6582 0 4 1022 378 0 0 0 chr1 57314456 57314498 -139880934 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4 1022 435 266 31 8 chr1 57315003 57315132 -139880300 + B1F2 SINE Alu 7 138 -11 4 1022 242 304 49 71 chr1 57320158 57320342 -139875090 + L2c LINE L2 3204 3383 -4 4 1022 29 28 0 0 chr1 57323931 57323967 -139871465 + AT_rich Low_complexity Low_complexity 1 36 0 4 1022 186 331 68 0 chr1 57324832 57324965 -139870467 + MIRb SINE MIR 48 189 -79 4 1022 451 183 21 0 chr1 57325455 57325548 -139869884 - PB1D9 SINE Alu 0 120 26 4 1022 345 284 65 47 chr1 57325955 57326125 -139869307 - Arthur1 DNA Tip100 -3555 392 220 4 1022 292 364 54 65 chr1 57326319 57326504 -139868928 - Arthur1 DNA Tip100 -3762 185 3 4 1022 1266 90 0 0 chr1 57327964 57328142 -139867290 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 4 1022 1146 152 55 32 chr1 57328581 57328798 -139866634 - URR1B DNA MER1_type -3 222 1 4 1022 189 94 0 0 chr1 57328903 57328935 -139866497 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1022 289 34 83 33 chr1 57330008 57330068 -139865364 + Lx9 LINE L1 7574 7636 -8 4 1022 772 58 8 55 chr1 57330450 57330577 -139864855 - L1Md_F2 LINE L1 -3 6579 6459 4 1022 7843 37 2 0 chr1 57330994 57331969 -139863463 + L1Md_F2 LINE L1 5521 6497 -85 4 1022 25 51 0 0 chr1 57332508 57332547 -139862885 + AT_rich Low_complexity Low_complexity 1 39 0 4 1022 21 36 0 0 chr1 57332711 57332739 -139862693 + AT_rich Low_complexity Low_complexity 1 28 0 4 1022 596 50 12 0 chr1 57333150 57333230 -139862202 + (TTCTC)n Simple_repeat Simple_repeat 1 81 0 4 1022 248 237 0 0 chr1 57333249 57333308 -139862124 - RMER1C Other Other -118 1224 1166 4 1022 1274 303 28 26 chr1 57333271 57333807 -139861625 - Lx8 LINE L1 -144 7329 6768 4 1022 324 0 0 0 chr1 57334265 57334301 -139861131 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1022 429 70 0 0 chr1 57334301 57334357 -139861075 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1022 727 242 92 29 chr1 57334373 57334645 -139860787 - L1MA4 LINE L1 -370 5930 5642 4 1022 471 240 0 0 chr1 57334645 57334770 -139860662 + (TA)n Simple_repeat Simple_repeat 1 125 0 4 1022 1503 245 96 38 chr1 57335165 57335251 -139860181 - Lx2B LINE L1 -93 6561 6505 4 1022 405 0 0 0 chr1 57335251 57335296 -139860136 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1022 12390 164 87 14 chr1 57335296 57336737 -139858695 - Lx2B LINE L1 -150 6850 5368 4 1022 2568 103 23 3 chr1 57336737 57337087 -139858345 - IAPEY2_LTR LTR ERVK 0 357 1 4 1022 12390 146 157 12 chr1 57337087 57337180 -139858252 - Lx2B LINE L1 -519 5367 5274 4 1022 228 35 0 0 chr1 57337180 57337209 -139858223 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1022 12390 146 157 12 chr1 57337209 57337744 -139857688 - Lx2B LINE L1 -613 5273 4739 4 1022 183 42 0 0 chr1 57337744 57337768 -139857664 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1022 12390 146 157 12 chr1 57337768 57337865 -139857567 - Lx2B LINE L1 -1148 4738 4643 4 1022 207 0 0 0 chr1 57337865 57337888 -139857544 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1022 12390 146 157 12 chr1 57337888 57338176 -139857256 - Lx2B LINE L1 -1244 4642 4352 4 1022 6841 84 12 20 chr1 57338176 57339085 -139856347 - RLTR13D6 LTR ERVK 0 902 1 4 1022 12390 146 157 12 chr1 57339085 57339973 -139855459 - Lx2B LINE L1 -1535 4351 3121 4 1022 635 128 16 33 chr1 57339975 57340096 -139855336 - MusHAL1 LINE L1 -1200 1512 1394 4 1022 2784 154 47 4 chr1 57340087 57340621 -139854811 - MusHAL1 LINE L1 -1530 1182 626 4 1022 1851 172 30 3 chr1 57340611 57340950 -139854482 - Lx2B LINE L1 -5760 1224 877 4 1022 682 309 122 22 chr1 57341121 57341580 -139853852 - L1M2 LINE L1 -1162 4981 4477 4 1022 1760 147 74 35 chr1 57341754 57342092 -139853340 - ORR1B2 LTR MaLR -16 351 1 4 1022 238 298 156 31 chr1 57342315 57342443 -139852989 - ID_B1 SINE B4 -71 153 10 4 1022 386 253 160 39 chr1 57343998 57344154 -139851278 + B4A SINE B4 111 285 -7 5 1022 324 0 0 0 chr1 57344170 57344206 -139851226 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1022 30 0 0 0 chr1 57345619 57345649 -139849783 + AT_rich Low_complexity Low_complexity 1 30 0 5 1022 282 29 0 0 chr1 57347086 57347121 -139848311 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1022 6613 70 5 4 chr1 57347198 57348017 -139847415 - L1_Mus4 LINE L1 -1 6635 5816 5 1022 1215 80 40 6 chr1 57349354 57349530 -139845902 - B2_Mm2 SINE B2 -3 192 11 5 1022 215 170 21 0 chr1 57349552 57349599 -139845833 + (TTAA)n Simple_repeat Simple_repeat 2 49 0 5 1022 303 28 0 0 chr1 57349718 57349754 -139845678 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 5 1022 535 223 60 30 chr1 57349950 57350046 -139845386 + Lx9 LINE L1 7328 7429 -215 5 1022 3206 170 49 5 chr1 57350046 57350597 -139844835 - RMER15 LTR ERVL 0 575 1 5 1022 535 221 809 35 chr1 57350597 57350650 -139844782 + Lx9 LINE L1 7430 7517 -127 5 1022 384 22 0 0 chr1 57350650 57350695 -139844737 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1022 343 215 36 51 chr1 57350695 57350818 -139844614 + Lx9 LINE L1 7518 7643 -1 5 1022 410 0 0 20 chr1 57352795 57352846 -139842586 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1022 326 241 12 25 chr1 57353029 57353110 -139842322 + ID4 SINE ID 2 81 -2 5 1022 260 276 104 13 chr1 57353589 57353666 -139841766 + RSINE1 SINE B4 11 94 -71 5 1022 210 369 0 0 chr1 57353774 57353839 -139841593 + RSINE1 SINE B4 88 152 -13 5 1022 247 194 0 31 chr1 57354147 57354211 -139841221 + Lx8 LINE L1 7404 7465 -8 5 1022 430 301 37 31 chr1 57354222 57354383 -139841049 - MER3 DNA MER1_type -27 182 21 5 1022 930 119 97 7 chr1 57354554 57354698 -139840734 - Lx4A LINE L1 0 7058 6902 5 1022 1195 130 20 30 chr1 57354698 57354896 -139840536 + Lx4A LINE L1 6706 6901 -157 5 1022 618 205 3 3 chr1 57355127 57355244 -139840188 - B1_Mur1 SINE Alu -29 120 4 5 1022 375 316 41 66 chr1 57355244 57355271 -139840161 - B4 SINE B4 -200 92 69 5 1022 26 50 0 0 chr1 57355320 57355360 -139840072 + AT_rich Low_complexity Low_complexity 1 40 0 5 1022 1286 273 42 79 chr1 57356364 57356893 -139838539 - Lx8 LINE L1 -6 7467 6959 5 1022 268 318 166 11 chr1 57360010 57360185 -139835247 + MER2 DNA MER2_type 130 331 -14 5 1022 1120 117 7 12 chr1 57360610 57361021 -139834411 + (CATA)n Simple_repeat Simple_repeat 1 408 0 5 1022 309 311 0 11 chr1 57362420 57362511 -139832921 + ORR1D2 LTR MaLR 1 90 -280 5 1022 675 134 50 8 chr1 57362511 57362631 -139832801 + ORR1D2 LTR MaLR 246 370 0 5 1022 471 249 101 33 chr1 57362894 57363114 -139832318 + MLT1B LTR MaLR 120 366 -24 5 1022 267 185 72 58 chr1 57363163 57363232 -139832200 + LTR79 LTR ERVL 131 200 -327 5 1022 459 0 0 0 chr1 57363285 57363336 -139832096 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1022 516 111 0 0 chr1 57363336 57363426 -139832006 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1022 631 302 122 10 chr1 57364600 57364804 -139830628 - LTR16E2 LTR ERVL -91 477 251 5 1022 2509 98 82 23 chr1 57365188 57365576 -139829856 + IAPLTR2a LTR ERVK 1 411 0 5 1022 1012 132 25 81 chr1 57365577 57365775 -139829657 + IAPEz-int LTR ERVK 9 195 -6286 5 1022 241 321 0 0 chr1 57365775 57365828 -139829604 + RLTR27 LTR ERVK 223 275 -34 5 1022 228 321 0 0 chr1 57365856 57365909 -139829523 + RLTR27 LTR ERVK 223 275 -34 5 1022 228 321 0 0 chr1 57365937 57365990 -139829442 + RLTR27 LTR ERVK 223 275 -34 5 1022 3519 74 39 40 chr1 57365990 57366631 -139828801 + IAPEz-int LTR ERVK 168 662 -5819 5 1022 2626 82 0 3 chr1 57366631 57366974 -139828458 + IAPEz-int LTR ERVK 1359 1700 -4781 5 1022 6872 45 4 11 chr1 57366967 57367802 -139827630 + IAPEz-int LTR ERVK 5651 6479 -2 5 1022 2551 100 77 23 chr1 57367804 57368194 -139827238 + IAPLTR2a LTR ERVK 1 411 0 5 1022 600 241 30 8 chr1 57368609 57368743 -139826689 - RLTR25B LTR ERVK 0 1028 892 5 1022 279 175 17 17 chr1 57368728 57368786 -139826646 - RLTR25B LTR ERVK -241 787 730 5 1022 35629 63 2 6 chr1 57368790 57370131 -139825301 - L1Md_F2 LINE L1 -1 6581 5244 5 1022 243 0 0 0 chr1 57370131 57370158 -139825274 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1022 35629 75 14 2 chr1 57370158 57374756 -139820676 - L1Md_F2 LINE L1 -640 5243 586 5 1022 3759 137 91 7 chr1 57374756 57375438 -139819994 - RLTR25B LTR ERVK -289 739 1 5 1022 325 0 44 0 chr1 57376316 57376361 -139819071 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 1022 1127 88 7 13 chr1 57376365 57376514 -139818918 - B1_Mus1 SINE Alu 0 148 1 5 1022 270 335 8 107 chr1 57376516 57376588 -139818844 + HAL1 LINE L1 2252 2322 -185 5 1022 1155 195 242 17 chr1 57376588 57376890 -139818542 - ORR1D2 LTR MaLR 0 370 1 5 1022 270 335 8 107 chr1 57376890 57377078 -139818354 + HAL1 LINE L1 2323 2486 -21 5 1022 735 134 0 21 chr1 57377176 57377321 -139818111 + GA-rich Low_complexity Low_complexity 1 142 0 5 1022 576 323 94 0 chr1 57380443 57380678 -139814754 - Lx8 LINE L1 -154 7319 7063 5 1022 3424 294 55 28 chr1 57380675 57381834 -139813598 + Lx8 LINE L1 6260 7450 -23 5 1022 481 308 0 0 chr1 57382210 57382327 -139813105 + PB1D10 SINE Alu 1 117 0 5 1022 431 32 21 0 chr1 57383733 57383801 -139811631 - B1_Mus2 SINE Alu 0 150 74 5 1022 785 124 8 0 chr1 57385281 57385410 -139810022 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 5 1022 185 0 40 0 chr1 57386818 57386843 -139808589 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 5 1022 37 39 0 0 chr1 57386968 57387019 -139808413 + AT_rich Low_complexity Low_complexity 1 51 0 5 1022 696 252 126 63 chr1 57387235 57387489 -139807943 + AmnSINE1 SINE SINE 284 553 -22 5 1022 330 26 0 0 chr1 57387494 57387533 -139807899 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1022 432 185 254 0 chr1 57387795 57387925 -139807507 + URR1B DNA MER1_type 2 164 -61 5 1022 716 300 77 34 chr1 57388910 57389234 -139806198 - MTE2b LTR MaLR 0 379 42 5 1022 357 263 21 0 chr1 57389598 57389691 -139805741 - B3 SINE B2 0 216 122 5 1022 716 244 19 0 chr1 57389691 57389847 -139805585 + B3A SINE B2 2 160 -38 5 1022 248 53 26 0 chr1 57390049 57390087 -139805345 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 1022 352 307 45 127 chr1 57391073 57391230 -139804202 - B1F1 SINE Alu -5 144 1 5 1022 213 39 0 0 chr1 57391247 57391273 -139804159 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 5 1022 1263 94 0 0 chr1 57391275 57391455 -139803977 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1022 923 157 206 6 chr1 57391468 57391648 -139803784 + B3 SINE B2 1 216 0 5 1022 260 70 23 0 chr1 57392260 57392303 -139803129 + (CCCTG)n Simple_repeat Simple_repeat 3 46 0 5 1022 1025 80 7 0 chr1 57392859 57392996 -139802436 + B1_Mus1 SINE Alu 2 139 -9 5 1022 1174 169 14 18 chr1 57393011 57393228 -139802204 + B3 SINE B2 1 216 0 5 1022 516 308 39 28 chr1 57393479 57393763 -139801669 - B4A SINE B4 -5 287 1 5 1022 361 263 92 57 chr1 57393827 57393968 -139801464 + B1F2 SINE Alu 4 149 0 5 1022 2586 133 16 26 chr1 57394242 57394616 -139800816 - MTC LTR MaLR 0 421 52 5 1022 1031 163 48 65 chr1 57394616 57394846 -139800586 - URR1A DNA MER1_type 0 226 1 5 1022 2586 133 16 26 chr1 57394846 57394896 -139800536 - MTC LTR MaLR -370 51 1 5 1022 227 240 20 0 chr1 57395395 57395445 -139799987 - B3 SINE B2 -12 204 154 5 1022 825 232 25 15 chr1 57395445 57395646 -139799786 - B3 SINE B2 -13 203 1 5 1022 300 280 123 31 chr1 57396981 57397143 -139798289 + MIR3 SINE MIR 29 205 -3 5 1022 513 115 0 0 chr1 57399874 57399952 -139795480 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 5 1022 26 30 0 0 chr1 57401093 57401126 -139794306 + AT_rich Low_complexity Low_complexity 1 33 0 5 1022 208 320 67 48 chr1 57402001 57402106 -139793326 + MIRm SINE MIR 11 117 -159 5 1022 334 268 224 28 chr1 57403598 57403951 -139791481 - LTR37A LTR ERV1 -4 422 1 5 1022 234 0 0 0 chr1 57404080 57404106 -139791326 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1022 324 0 0 0 chr1 57404106 57404141 -139791291 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1022 1541 52 0 20 chr1 57404228 57404424 -139791008 + B2_Mm1a SINE B2 2 193 0 5 1022 225 0 0 0 chr1 57404920 57404945 -139790487 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1022 204 97 0 0 chr1 57405539 57405570 -139789862 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 5 1022 201 39 0 0 chr1 57405572 57405598 -139789834 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 5 1022 556 305 30 0 chr1 57405605 57405736 -139789696 - ID_B1 SINE B4 -6 218 84 5 1022 979 325 42 11 chr1 57405930 57406310 -139789122 - Lx8 LINE L1 -123 7350 6959 5 1022 283 302 0 65 chr1 57407527 57407651 -139787781 - LTR37A LTR ERV1 -296 130 15 5 1022 275 0 0 28 chr1 57408293 57408329 -139787103 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1022 721 91 213 8 chr1 57408671 57408793 -139786639 - B1_Mur4 SINE Alu -1 149 3 5 1022 532 355 98 48 chr1 57408794 57409315 -139786117 - MLT1H1 LTR MaLR 0 555 9 5 1023 279 211 119 46 chr1 57413256 57413365 -139782067 + RLTR25B LTR ERVK 393 509 -519 5 1023 317 162 0 81 chr1 57413299 57413373 -139782059 + MT2B LTR ERVL 197 264 -337 5 1023 785 30 10 0 chr1 57413307 57413408 -139782024 + B1_Mm SINE Alu 46 147 0 5 1023 257 259 37 0 chr1 57413672 57413726 -139781706 + ID4_ SINE ID 17 72 -11 5 1023 846 189 0 20 chr1 57414900 57415051 -139780381 + B1_Mur4 SINE Alu 2 149 -1 5 1023 35 42 0 40 chr1 57415051 57415126 -139780306 + AT_rich Low_complexity Low_complexity 1 72 0 5 1023 222 187 38 29 chr1 57415284 57415367 -139780065 + MIR SINE MIR 121 220 -48 5 1023 288 258 103 61 chr1 57416027 57416192 -139779240 - MLT1N2 LTR MaLR -14 548 377 5 1023 1247 181 24 11 chr1 57416198 57416510 -139778922 + ORR1B1 LTR MaLR 1 386 -8 5 1023 977 246 104 24 chr1 57416744 57417081 -139778351 - MTE2a LTR MaLR 0 379 16 5 1023 282 322 68 25 chr1 57417244 57417362 -139778070 - MIR SINE MIR -101 167 45 5 1023 244 345 38 81 chr1 57417430 57417616 -139777816 + MER97c DNA MER1_type? 1 178 -912 5 1023 994 213 0 50 chr1 57418059 57418340 -139777092 + RMER3D-int LTR ERVK 1112 1378 -1464 5 1023 2322 197 86 44 chr1 57418349 57418980 -139776452 + MYSERV16_I-int LTR ERVK 277 933 -1393 5 1023 6255 126 55 12 chr1 57418987 57420187 -139775245 + MYSERV16_I-int LTR ERVK 1073 2324 -2 5 1023 2633 180 24 18 chr1 57420193 57420690 -139774742 + RLTR16 LTR ERVK 6 505 0 5 1023 1079 220 90 72 chr1 57420819 57421328 -139774104 + RMER2 LTR ERV1 1 557 -10 5 1023 394 317 123 54 chr1 57421407 57421419 -139774013 - MLT2B1 LTR ERVL -28 573 562 5 1023 315 0 0 0 chr1 57421419 57421454 -139773978 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1023 550 316 390 37 chr1 57421454 57421832 -139773600 - MLT2B1 LTR ERVL -40 561 21 5 1023 26 0 0 0 chr1 57422042 57422068 -139773364 + AT_rich Low_complexity Low_complexity 1 26 0 6 1023 4908 167 32 25 chr1 57422078 57422962 -139772470 + RMER19B LTR ERVK 1 890 -12 6 1023 194 329 26 26 chr1 57424784 57424862 -139770570 + L2c LINE L2 3270 3347 -40 6 1023 300 358 0 0 chr1 57425415 57425510 -139769922 + MIRb SINE MIR 49 143 -125 6 1023 556 283 143 35 chr1 57425623 57426107 -139769325 + L1MC LINE L1 4796 5331 -815 6 1023 256 258 258 0 chr1 57426123 57426212 -139769220 + MTE-int LTR MaLR 245 356 -1224 6 1023 245 263 0 17 chr1 57426220 57426278 -139769154 + RSINE1 SINE B4 12 68 -97 6 1023 2327 291 62 6 chr1 57426371 57426999 -139768433 + MTE-int LTR MaLR 864 1527 -53 6 1023 1189 279 50 3 chr1 57426999 57427319 -139768113 + ORR1E LTR MaLR 1 335 -24 6 1023 2239 277 111 23 chr1 57427446 57429015 -139766417 - L1M4 LINE L1 -665 5509 3801 6 1023 408 274 8 89 chr1 57429044 57429144 -139766288 - PB1D10 SINE Alu -3 114 23 6 1023 2919 33 0 88 chr1 57429144 57429544 -139765888 + RLTR10B2 LTR ERVK 1 365 0 6 1023 408 274 8 89 chr1 57429544 57429567 -139765865 - PB1D10 SINE Alu -95 22 1 6 1023 261 181 0 77 chr1 57429569 57429647 -139765785 - L1MC LINE L1 -2338 3808 3737 6 1023 2649 147 28 79 chr1 57429782 57430248 -139765184 + RLTR20C LTR ERVK 1 432 -102 6 1023 411 21 0 0 chr1 57430248 57430296 -139765136 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1023 2649 147 28 79 chr1 57430296 57430337 -139765095 + RLTR20C LTR ERVK 433 481 -53 6 1023 261 183 0 0 chr1 57430587 57430647 -139764785 + (CCA)n Simple_repeat Simple_repeat 3 62 0 6 1023 3157 98 17 29 chr1 57430902 57431398 -139764034 + RMER16 LTR ERVK 1 533 0 6 1023 1832 204 11 50 chr1 57432602 57432983 -139762449 - ORR1D1 LTR MaLR -8 366 1 6 1023 615 229 149 45 chr1 57433122 57433323 -139762109 + B4A SINE B4 3 224 -68 6 1023 816 242 89 76 chr1 57433489 57433780 -139761652 - RMER5 LTR ERV1 -238 296 2 6 1023 183 100 0 0 chr1 57434546 57434576 -139760856 + (CTG)n Simple_repeat Simple_repeat 2 31 0 6 1023 325 282 9 35 chr1 57435309 57435423 -139760009 - MER3 DNA MER1_type -68 141 31 6 1023 285 29 0 0 chr1 57435740 57435774 -139759658 + (TGG)n Simple_repeat Simple_repeat 3 36 0 6 1023 239 357 123 9 chr1 57436144 57436356 -139759076 + L2 LINE L2 2214 2449 -970 6 1023 337 250 105 32 chr1 57437483 57437578 -139757854 - PB1D10 SINE Alu -15 102 1 6 1023 437 268 0 10 chr1 57437815 57437913 -139757519 + ID_B1 SINE B4 123 219 -5 6 1023 599 259 59 0 chr1 57437928 57438063 -139757369 + RSINE1 SINE B4 6 148 -17 6 1023 324 0 0 0 chr1 57438679 57438715 -139756717 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1023 277 208 203 27 chr1 57438909 57438983 -139756449 + PB1D10 SINE Alu 29 115 -2 6 1023 21 57 0 0 chr1 57438991 57439026 -139756406 + AT_rich Low_complexity Low_complexity 1 35 0 6 1023 350 122 8 18 chr1 57439091 57439156 -139756276 - B2_Mm2 SINE B2 -102 114 47 6 1023 1075 92 98 0 chr1 57439202 57439365 -139756067 - B2_Mm1t SINE B2 -13 180 2 6 1023 291 191 162 0 chr1 57443937 57444005 -139751427 - ID4 SINE ID -3 80 2 6 1023 276 331 56 72 chr1 57444920 57445115 -139750317 + MLT1L LTR MaLR 357 548 -62 6 1023 21 0 0 0 chr1 57445297 57445318 -139750114 + AT_rich Low_complexity Low_complexity 1 21 0 6 1023 215 311 0 32 chr1 57446700 57446763 -139748669 - L2c LINE L2 -51 3336 3276 6 1023 23 0 0 0 chr1 57447155 57447178 -139748254 + AT_rich Low_complexity Low_complexity 1 23 0 6 1023 207 0 0 0 chr1 57447885 57447908 -139747524 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1023 300 190 35 71 chr1 57447909 57447994 -139747438 - ID_B1 SINE B4 0 224 143 6 1023 216 0 0 0 chr1 57447998 57448022 -139747410 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 6 1023 613 189 74 0 chr1 57448024 57448146 -139747286 - B1_Mus2 SINE Alu -15 132 2 6 1023 228 35 0 0 chr1 57448675 57448704 -139746728 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1023 281 336 79 75 chr1 57451863 57452143 -139743289 + LTR16B1 LTR ERVL 76 356 -124 6 1023 673 244 122 68 chr1 57452404 57452641 -139742791 - B4 SINE B4 -23 269 20 6 1023 357 303 126 0 chr1 57452874 57453049 -139742383 - MIR SINE MIR -2 260 64 6 1023 343 264 0 32 chr1 57453066 57453160 -139742272 + MT2B LTR ERVL 167 257 -344 6 1023 662 68 117 0 chr1 57453091 57453194 -139742238 + B1_Mus1 SINE Alu 34 148 0 6 1023 696 276 124 10 chr1 57453292 57453486 -139741946 + B4A SINE B4 8 223 -69 6 1023 234 0 0 0 chr1 57453540 57453566 -139741866 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1023 878 204 28 17 chr1 57453957 57454136 -139741296 + B3A SINE B2 2 182 -16 6 1023 26 0 0 0 chr1 57454546 57454572 -139740860 + AT_rich Low_complexity Low_complexity 1 26 0 6 1023 2107 128 6 42 chr1 57454719 57455052 -139740380 + ORR1A4 LTR MaLR 1 321 -8 6 1023 40 21 0 0 chr1 57456071 57456118 -139739314 + AT_rich Low_complexity Low_complexity 1 47 0 6 1023 252 0 0 0 chr1 57456162 57456190 -139739242 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1023 307 255 105 11 chr1 57456190 57456285 -139739147 - RSINE1 SINE B4 -45 120 17 6 1023 4069 142 95 5 chr1 57456381 57457013 -139738419 + RLTR17 LTR ERVK 4 692 0 6 1023 1154 88 0 7 chr1 57458737 57458885 -139736547 - B1_Mus1 SINE Alu 0 148 2 6 1023 734 287 121 20 chr1 57459004 57459352 -139736080 - L1MC4 LINE L1 -256 7786 7404 6 1023 291 271 189 18 chr1 57459401 57459570 -139735862 - L1MC4 LINE L1 -1039 7003 6806 6 1023 242 356 76 17 chr1 57459787 57460024 -139735408 - L1MC4 LINE L1 -1328 6554 6304 6 1023 538 183 19 9 chr1 57460127 57460232 -139735200 - B1_Mur1 SINE Alu 0 149 44 6 1023 1636 57 0 5 chr1 57460600 57460793 -139734639 - B2_Mm1t SINE B2 0 193 2 6 1023 1600 57 10 15 chr1 57460891 57461086 -139734346 + B2_Mm2 SINE B2 2 195 0 6 1023 736 175 55 8 chr1 57461617 57461744 -139733688 + B1_Mur3 SINE Alu 5 137 -12 6 1023 938 123 14 14 chr1 57462003 57462143 -139733289 - B1_Mur3 SINE Alu -1 148 9 6 1023 1174 74 0 7 chr1 57462564 57462713 -139732719 + B1_Mus1 SINE Alu 1 148 0 6 1023 303 132 0 54 chr1 57464374 57464430 -139731002 + L2a LINE L2 3374 3426 0 6 1023 361 244 110 11 chr1 57465327 57465418 -139730014 + B3A SINE B2 4 103 -95 6 1023 379 331 311 20 chr1 57465676 57465971 -139729461 - MLT1B LTR MaLR -7 383 3 6 1023 4799 65 19 0 chr1 57467134 57467889 -139727543 - L1_Mus2 LINE L1 -562 6004 5235 6 1023 4754 60 14 20 chr1 57467889 57468482 -139726950 + L1_Mus2 LINE L1 5978 6566 0 6 1023 544 163 143 0 chr1 57468998 57469096 -139726336 + PB1D9 SINE Alu 2 113 -7 6 1023 568 231 20 59 chr1 57470406 57470558 -139724874 + B1_Mur1 SINE Alu 2 147 -2 6 1023 231 61 0 0 chr1 57471164 57471197 -139724235 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 1023 537 269 21 28 chr1 57471368 57471513 -139723919 - B1_Mur1 SINE Alu -4 145 2 6 1023 450 0 0 0 chr1 57471819 57471869 -139723563 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1023 1131 75 0 40 chr1 57471903 57472055 -139723377 + B1_Mus2 SINE Alu 2 147 0 6 1023 288 0 0 0 chr1 57472055 57472087 -139723345 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1023 580 249 113 65 chr1 57473090 57473399 -139722033 + L1MA8 LINE L1 5693 6016 -275 6 1023 282 262 83 9 chr1 57473513 57473621 -139721811 + L1ME1 LINE L1 4798 4913 -1233 6 1023 487 232 98 35 chr1 57474350 57474493 -139720939 + L1ME1 LINE L1 5472 5623 -556 6 1023 979 268 86 39 chr1 57474495 57474833 -139720599 + ORR1D2 LTR MaLR 3 356 -14 6 1023 227 260 49 61 chr1 57474838 57474920 -139720512 + L1ME1 LINE L1 5627 5707 -472 6 1023 321 316 82 73 chr1 57475006 57475238 -139720194 + L1ME1 LINE L1 5906 6139 -40 6 1023 405 0 0 0 chr1 57475720 57475765 -139719667 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1023 884 276 159 28 chr1 57475781 57476102 -139719330 + MTEa LTR MaLR 1 363 -16 6 1023 1246 81 0 0 chr1 57476161 57476309 -139719123 + B1_Mus1 SINE Alu 1 148 0 6 1023 903 214 99 0 chr1 57476327 57476528 -139718904 - MTE2b LTR MaLR -157 222 2 6 1023 1917 160 98 3 chr1 57476745 57477083 -139718349 + ORR1D1 LTR MaLR 3 372 -2 6 1023 2817 204 93 62 chr1 57477458 57478622 -139716810 - RMER1B Other Other -28 1038 1 6 1023 1238 185 229 10 chr1 57478592 57478897 -139716535 - RMER1B Other Other -651 415 44 6 1023 299 294 216 40 chr1 57479423 57479696 -139715736 + MLT1D LTR MaLR 1 321 -184 6 1023 267 312 53 15 chr1 57479707 57479841 -139715591 + MLT1D LTR MaLR 252 505 0 6 1023 317 305 68 72 chr1 57479949 57480242 -139715190 - L1MC4 LINE L1 -974 7068 6777 6 1023 257 27 54 0 chr1 57480568 57480605 -139714827 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1023 523 300 0 8 chr1 57481650 57481781 -139713651 + B1F SINE Alu 11 140 -9 6 1023 558 108 0 0 chr1 57482212 57482295 -139713137 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 6 1023 1292 48 0 0 chr1 57483221 57483368 -139712064 + B1_Mm SINE Alu 1 147 0 6 1023 324 70 0 0 chr1 57483890 57483933 -139711499 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 1023 839 135 45 0 chr1 57483955 57484088 -139711344 - B2_Mm2 SINE B2 -56 139 1 6 1023 375 212 165 71 chr1 57484094 57484221 -139711211 - MER20 DNA MER1_type -41 178 40 6 1023 2610 139 101 23 chr1 57484376 57484776 -139710656 - RLTR28 LTR ERVL 0 524 87 6 1023 216 0 0 0 chr1 57484776 57484800 -139710632 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6 1023 2610 139 101 23 chr1 57484800 57484885 -139710547 - RLTR28 LTR ERVL -438 86 2 6 1023 228 391 0 0 chr1 57485209 57485296 -139710136 - MIR SINE MIR -102 160 74 6 1023 225 302 103 10 chr1 57486072 57486169 -139709263 + Charlie4a DNA MER1_type 27 132 -376 6 1023 579 308 0 44 chr1 57486197 57486401 -139709031 + Charlie4a DNA MER1_type 221 415 -93 6 1023 1089 276 93 24 chr1 57487256 57487351 -139708081 - ORR1D2 LTR MaLR -12 358 262 6 1023 1190 75 0 39 chr1 57487351 57487504 -139707928 + B1_Mus2 SINE Alu 1 147 0 7 1023 1089 276 93 24 chr1 57487504 57487742 -139707690 - ORR1D2 LTR MaLR -109 261 2 6 1023 227 336 43 103 chr1 57487967 57488249 -139707183 + MLT1B LTR MaLR 124 388 -2 7 1023 244 331 81 19 chr1 57488274 57488434 -139706998 - MIRb SINE MIR -84 184 15 7 1023 24 32 0 0 chr1 57489604 57489635 -139705797 + AT_rich Low_complexity Low_complexity 1 31 0 7 1023 374 263 0 0 chr1 57490180 57490256 -139705176 - ID4_ SINE ID -6 77 2 7 1023 4643 58 97 0 chr1 57490257 57490843 -139704589 + L1_Mus3 LINE L1 5994 6636 -2 7 1023 204 67 0 0 chr1 57490942 57490972 -139704460 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 7 1023 393 22 0 0 chr1 57490970 57491016 -139704416 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 7 1023 614 218 143 107 chr1 57491017 57491233 -139704199 - B4 SINE B4 -60 232 9 7 1023 482 262 41 41 chr1 57491245 57491392 -139704040 - B1F1 SINE Alu -2 147 1 7 1023 366 285 135 69 chr1 57491642 57491902 -139703530 + LTR50 LTR ERVL 504 780 -15 7 1023 34 24 0 0 chr1 57491918 57491959 -139703473 + AT_rich Low_complexity Low_complexity 1 41 0 7 1023 234 0 0 0 chr1 57492123 57492149 -139703283 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1023 702 188 8 0 chr1 57492167 57492295 -139703137 + B3 SINE B2 1 129 -87 7 1023 786 212 41 82 chr1 57495010 57495205 -139700227 - B3A SINE B2 -6 192 6 7 1023 332 298 67 22 chr1 57495223 57495357 -139700075 + MER20 DNA MER1_type 73 212 -7 7 1023 347 89 18 0 chr1 57496285 57496341 -139699091 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1023 438 20 0 0 chr1 57496600 57496651 -139698781 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 7 1023 534 174 32 65 chr1 57497263 57497386 -139698046 + PB1D9 SINE Alu 1 119 -1 7 1023 255 98 49 0 chr1 57497386 57497447 -139697985 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 7 1023 460 305 129 95 chr1 57497558 57498086 -139697346 + LTR85b LTR Gypsy? 236 781 -3 7 1023 811 108 8 30 chr1 57498219 57498239 -139697193 + ORR1A4 LTR MaLR 199 217 -112 7 1023 1295 56 33 16 chr1 57498239 57498421 -139697011 + L1_Mus3 LINE L1 6454 6638 0 7 1023 811 108 8 30 chr1 57498421 57498534 -139696898 + ORR1A4 LTR MaLR 218 329 0 7 1023 184 245 0 0 chr1 57498792 57498841 -139696591 - L2 LINE L2 -339 3080 3032 7 1023 387 0 0 0 chr1 57499055 57499098 -139696334 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1023 1883 283 98 31 chr1 57499110 57499818 -139695614 - Lx9 LINE L1 -214 7430 6676 7 1023 184 355 75 11 chr1 57499885 57499979 -139695453 - L2 LINE L2 -619 2800 2701 7 1023 270 300 82 0 chr1 57500085 57500195 -139695237 - L2a LINE L2 -1 3425 3307 1 1023 408 267 92 98 chr1 57500538 57500862 -139694570 + ORR1E LTR MaLR 30 370 0 2 1023 2126 118 12 58 chr1 57501851 57502194 -139693238 - ORR1A2 LTR MaLR 0 327 1 3 1023 273 341 0 87 chr1 57503282 57503420 -139692012 + MLT1J LTR MaLR 237 362 -150 4 1023 308 352 16 32 chr1 57503942 57504068 -139691364 + MER115 DNA Tip100 102 225 -468 5 1023 525 320 30 5 chr1 57504233 57504434 -139690998 + MER115 DNA Tip100 474 679 -14 5 1023 1251 72 0 0 chr1 57504451 57504618 -139690814 + (TCTCCC)n Simple_repeat Simple_repeat 3 169 0 6 1023 709 216 43 43 chr1 57507011 57507219 -139688213 + B3 SINE B2 5 212 -4 7 1023 471 345 29 19 chr1 57507247 57507457 -139687975 - RMER15 LTR ERVL -17 558 347 8 1023 349 369 32 59 chr1 57507465 57507767 -139687665 - MLT1H-int LTR MaLR -55 1434 1064 9 1023 530 268 227 87 chr1 57507785 57508177 -139687255 - RLTR19 LTR ERVK -43 456 10 1 1023 1129 284 41 8 chr1 57508379 57508744 -139686688 - MTEa LTR MaLR 0 379 3 1 1023 915 153 88 0 chr1 57509009 57509179 -139686253 - Lx9 LINE L1 -225 7419 7235 1 1023 960 131 20 0 chr1 57509199 57509352 -139686080 - Lx9 LINE L1 -542 7102 6947 1 1023 618 125 0 9 chr1 57509354 57509459 -139685973 + B1_Mur4 SINE Alu 47 150 0 1 1023 3758 243 93 57 chr1 57509497 57510134 -139685298 - Lx9 LINE L1 -701 6943 6312 1 1023 882 173 12 0 chr1 57510134 57510296 -139685136 - Lx4A LINE L1 -4 7054 6891 1 1023 3758 218 57 37 chr1 57510296 57511400 -139684032 - Lx9 LINE L1 -1333 6311 5120 1 1023 3703 176 93 25 chr1 57511408 57512266 -139683166 + RMER19B LTR ERVK 20 901 -1 1 1023 3885 206 49 42 chr1 57512309 57513253 -139682179 - Lx9 LINE L1 -828 5019 4070 1 1023 326 62 0 20 chr1 57513249 57513298 -139682134 - L1_Mm LINE L1 -3113 2770 2723 1 1023 22732 65 4 0 chr1 57513296 57515846 -139679586 + L1Md_F2 LINE L1 2681 5234 -649 1 1023 813 73 0 0 chr1 57515846 57515955 -139679477 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 1 1023 22732 65 4 0 chr1 57515955 57516300 -139679132 + L1Md_F2 LINE L1 5235 5584 -299 1 1023 8178 48 7 0 chr1 57516301 57517289 -139678143 + L1Md_F2 LINE L1 5588 6582 0 1 1023 1099 206 17 26 chr1 57517289 57517523 -139677909 - Lx9 LINE L1 -1769 4078 3847 1 1023 1486 194 49 0 chr1 57517713 57517997 -139677435 - ORR1C2 LTR MaLR 0 384 87 1 1023 487 266 84 63 chr1 57518092 57518329 -139677103 + MER20B DNA MER1_type 535 776 -7 2 1023 1868 179 85 3 chr1 57518727 57519081 -139676351 - ORR1C2 LTR MaLR -1 383 1 2 1023 275 283 0 39 chr1 57520635 57520738 -139674694 + MLT1N2 LTR MaLR 464 562 0 2 1023 189 171 0 0 chr1 57520941 57520976 -139674456 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2 1023 270 259 57 46 chr1 57522437 57522554 -139672878 - MIR SINE MIR -56 212 81 2 1023 288 311 42 8 chr1 57522596 57522716 -139672716 + L1MB2 LINE L1 5853 5976 -195 2 1023 216 86 0 0 chr1 57522803 57522838 -139672594 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 2 1023 498 248 14 47 chr1 57524708 57524856 -139670576 + U1 snRNA snRNA 8 150 -15 2 1023 775 227 42 60 chr1 57524887 57525103 -139670329 + B3 SINE B2 1 212 -4 2 1023 3908 130 69 9 chr1 57526457 57527063 -139668369 + RLTR33 LTR ERVK 5 634 -44 2 1023 423 0 0 0 chr1 57527063 57527110 -139668322 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1023 3908 130 69 9 chr1 57527110 57527139 -139668293 + RLTR33 LTR ERVK 635 676 -2 2 1023 501 306 103 5 chr1 57527235 57527419 -139668013 + MTD LTR MaLR 2 203 -216 3 1023 531 172 65 6 chr1 57527449 57527583 -139667849 + MTD LTR MaLR 266 419 0 3 1023 469 320 75 34 chr1 57528499 57528819 -139666613 - L1MCb LINE L1 -5554 491 159 3 1023 511 295 12 6 chr1 57528818 57528985 -139666447 + L1M5 LINE L1 4393 4560 -1586 3 1023 1008 303 86 14 chr1 57529001 57529433 -139665999 - MLT1D LTR MaLR -18 487 25 3 1023 1042 74 0 0 chr1 57529580 57529729 -139665703 - MusHAL1 LINE L1 -631 2081 1933 3 1023 241 304 25 63 chr1 57529727 57529978 -139665454 + L1M5 LINE L1 4582 4816 -1330 3 1023 392 307 38 130 chr1 57530087 57530402 -139665030 + B4A SINE B4 2 287 -5 3 1023 297 0 0 0 chr1 57530406 57530439 -139664993 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1023 441 0 0 0 chr1 57530441 57530490 -139664942 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1023 363 191 9 35 chr1 57530490 57530604 -139664828 + GA-rich Low_complexity Low_complexity 6 116 0 3 1023 646 274 61 93 chr1 57531132 57531227 -139664205 - L1M3 LINE L1 -497 5686 5591 4 1023 1370 202 96 47 chr1 57531227 57531590 -139663842 + ORR1C2 LTR MaLR 2 382 -2 4 1023 646 274 61 93 chr1 57531590 57531804 -139663628 - L1M3 LINE L1 -593 5590 5387 4 1023 398 329 63 21 chr1 57531804 57532043 -139663389 - L1MEd LINE L1 -4973 1146 898 4 1023 342 115 0 0 chr1 57532645 57532697 -139662735 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 4 1023 28 48 0 0 chr1 57532697 57532739 -139662693 + AT_rich Low_complexity Low_complexity 1 42 0 4 1023 680 184 0 4 chr1 57532740 57532985 -139662447 + (TG)n Simple_repeat Simple_repeat 1 243 0 4 1023 753 172 0 0 chr1 57532999 57533179 -139662253 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1023 275 288 84 62 chr1 57533179 57533219 -139662213 - B3A SINE B2 -16 182 145 4 1023 6132 62 22 36 chr1 57533219 57534053 -139661379 + RLTR13B2 LTR ERVK 1 822 0 4 1023 275 288 84 62 chr1 57534053 57534190 -139661242 - B3A SINE B2 -54 144 1 4 1023 263 28 0 27 chr1 57535650 57535687 -139659745 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1023 487 339 94 4 chr1 57535746 57535980 -139659452 + MIR SINE MIR 8 262 0 4 1023 455 298 0 0 chr1 57537104 57537225 -139658207 + L1MD2 LINE L1 5639 5759 -600 5 1023 289 211 10 82 chr1 57537273 57537371 -139658061 + L1MD2 LINE L1 5846 5936 -423 5 1023 26 0 0 0 chr1 57537537 57537563 -139657869 + AT_rich Low_complexity Low_complexity 1 26 0 5 1023 276 30 0 0 chr1 57537596 57537629 -139657803 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1023 463 308 86 21 chr1 57537633 57537819 -139657613 - B4A SINE B4 -51 241 44 5 1023 1241 164 77 0 chr1 57538697 57538905 -139656527 + URR1A DNA MER1_type 3 226 0 5 1023 255 305 0 17 chr1 57539922 57539982 -139655450 + LTR88b LTR Gypsy? 193 251 -586 5 1024 260 314 70 31 chr1 57540958 57541086 -139654346 + MER5B DNA MER1_type 25 157 -21 5 1024 542 327 35 10 chr1 57543090 57543291 -139652141 - MER58A DNA MER1_type -18 206 1 5 1024 378 0 0 0 chr1 57543851 57543893 -139651539 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 5 1024 904 291 22 4 chr1 57544090 57544366 -139651066 - B4 SINE B4 -11 281 1 5 1024 184 314 14 14 chr1 57544922 57544993 -139650439 + L2b LINE L2 3294 3364 -11 6 1024 1063 151 10 15 chr1 57545129 57545331 -139650101 - ORR1B1 LTR MaLR 0 394 194 6 1024 368 305 84 0 chr1 57545857 57545988 -139649444 + RSINE1 SINE B4 2 143 -22 6 1024 3158 37 47 16 chr1 57547820 57548204 -139647228 + MTA_Mm LTR MaLR 1 396 0 6 1024 248 140 40 0 chr1 57548719 57548769 -139646663 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 6 1024 223 214 18 0 chr1 57548777 57548833 -139646599 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 6 1024 1597 190 118 32 chr1 57549888 57550268 -139645164 - MTC LTR MaLR -8 413 1 6 1024 201 74 0 0 chr1 57550753 57550780 -139644652 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1024 219 98 0 73 chr1 57551073 57551128 -139644304 + GA-rich Low_complexity Low_complexity 6 56 0 6 1024 314 0 49 0 chr1 57551761 57551802 -139643630 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 6 1024 242 318 97 15 chr1 57551803 57551937 -139643495 + Kanga1a DNA Tc2 202 346 -408 7 1024 783 328 58 11 chr1 57552019 57552296 -139643136 + B4A SINE B4 1 290 -2 7 1024 207 204 0 0 chr1 57552304 57552358 -139643074 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1024 426 285 79 64 chr1 57552372 57552638 -139642794 + Kanga1a DNA Tc2 481 750 -4 7 1024 342 0 0 0 chr1 57554045 57554083 -139641349 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1024 349 262 37 0 chr1 57554471 57554578 -139640854 + L2a LINE L2 3315 3425 -1 7 1024 449 110 0 14 chr1 57555610 57555684 -139639748 + (GGA)n Simple_repeat Simple_repeat 2 74 0 7 1024 687 25 0 0 chr1 57556253 57556334 -139639098 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 7 1024 243 0 0 0 chr1 57556335 57556362 -139639070 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1024 1114 89 0 0 chr1 57556365 57556500 -139638932 - B1_Mus1 SINE Alu -13 135 1 7 1024 2378 223 45 15 chr1 57556504 57557103 -139638329 - RMER19B LTR ERVK -238 664 74 7 1024 38310 58 3 7 chr1 57557114 57563282 -139632150 - L1Md_F3 LINE L1 0 6584 446 8 1024 1280 163 124 0 chr1 57563290 57563523 -139631909 - RMER19B LTR ERVK -639 263 2 7 1024 512 260 45 13 chr1 57563743 57563899 -139631533 + RSINE1 SINE B4 3 163 -2 8 1024 533 261 0 21 chr1 57564172 57564317 -139631115 + MIR SINE MIR 120 261 -1 8 1024 291 313 29 58 chr1 57564467 57564606 -139630826 + MER5A1 DNA MER1_type 3 137 -29 8 1024 21 71 0 0 chr1 57564666 57564708 -139630724 + AT_rich Low_complexity Low_complexity 1 42 0 8 1024 212 175 0 0 chr1 57565609 57565649 -139629783 + A-rich Low_complexity Low_complexity 3 42 0 8 1024 716 126 8 0 chr1 57567206 57567325 -139628107 + (TC)n Simple_repeat Simple_repeat 1 120 0 8 1024 201 236 68 14 chr1 57567480 57567553 -139627879 + L2c LINE L2 3078 3154 -233 8 1024 240 35 0 0 chr1 57568456 57568485 -139626947 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1024 1260 75 0 0 chr1 57568487 57568634 -139626798 - B1_Mm SINE Alu 0 147 1 8 1024 198 0 0 0 chr1 57568815 57568837 -139626595 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 9 1024 509 220 59 26 chr1 57569810 57569960 -139625472 + MLT1F2 LTR MaLR 422 678 -2 9 1024 1546 313 48 55 chr1 57569960 57570756 -139624676 + L1M5 LINE L1 2164 2977 -3169 9 1024 827 42 252 8 chr1 57570756 57570875 -139624557 + B1_Mus1 SINE Alu 1 148 0 9 1024 1546 313 48 55 chr1 57570875 57571024 -139624408 + L1M5 LINE L1 2978 3102 -3044 9 1024 307 221 29 0 chr1 57571082 57571150 -139624282 + MTEa LTR MaLR 310 379 0 9 1024 3827 243 92 28 chr1 57571448 57572583 -139622849 - Lx8 LINE L1 -2 7471 6265 9 1024 26 0 0 0 chr1 57572641 57572667 -139622765 + AT_rich Low_complexity Low_complexity 1 26 0 9 1024 239 221 37 49 chr1 57573157 57573238 -139622194 + L1M5 LINE L1 4289 4368 -1778 9 1024 407 331 78 4 chr1 57573314 57573569 -139621863 + L1M5 LINE L1 4565 4838 -1308 9 1024 517 63 31 21 chr1 57574666 57574763 -139620669 + (CA)n Simple_repeat Simple_repeat 2 99 0 9 1024 1154 194 35 0 chr1 57574980 57575181 -139620251 + B3 SINE B2 1 208 -8 9 1024 1073 38 0 8 chr1 57575205 57575339 -139620093 - B1_Mus1 SINE Alu -8 140 8 9 1024 225 259 83 100 chr1 57575209 57575389 -139620043 + YREP_Mm Unknown Unknown 174 350 -1462 1 1024 189 0 0 0 chr1 57576225 57576246 -139619186 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1024 806 188 5 134 chr1 57576329 57576538 -139618894 + B3A SINE B2 1 182 -16 1 1024 374 297 154 104 chr1 57576903 57577343 -139618089 - MLT1C LTR MaLR 0 467 6 1 1024 275 350 109 45 chr1 57577402 57577713 -139617719 - LTR85b LTR Gypsy? -188 596 266 1 1024 7778 18 1 4 chr1 57578170 57578994 -139616438 + RLTR13B2 LTR ERVK 1 822 0 1 1024 306 73 0 0 chr1 57579879 57579920 -139615512 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1 1024 2476 67 82 0 chr1 57580167 57580495 -139614937 + IAPEY2_LTR LTR ERVK 1 355 -2 1 1024 509 219 230 2 chr1 57580546 57580737 -139614695 - L1MB5 LINE L1 -186 5988 5746 1 1024 414 311 109 13 chr1 57582079 57582317 -139613115 - ORSL DNA Tip100 -12 263 3 1 1024 1066 267 58 101 chr1 57583588 57583984 -139611448 + MTE2a LTR MaLR 1 379 0 1 1024 220 234 0 0 chr1 57584999 57585046 -139610386 + A-rich Low_complexity Low_complexity 1 47 0 1 1024 213 39 0 0 chr1 57585482 57585508 -139609924 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1024 309 109 0 0 chr1 57586674 57586720 -139608712 + (TCC)n Simple_repeat Simple_repeat 1 46 0 1 1024 1161 114 157 25 chr1 57587047 57587245 -139608187 + URR1B DNA MER1_type 2 225 0 1 1024 2162 253 83 9 chr1 57588030 57588597 -139606835 + Lx7 LINE L1 6658 7266 -430 1 1024 192 40 0 0 chr1 57588616 57588641 -139606791 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1024 23 54 0 0 chr1 57588758 57588795 -139606637 + AT_rich Low_complexity Low_complexity 1 37 0 1 1024 243 267 53 13 chr1 57588838 57588914 -139606518 + Tigger11a DNA MER2_type 466 544 -191 1 1024 244 267 12 62 chr1 57589434 57589514 -139605918 - RMER12B LTR ERVK -180 1224 1149 1 1024 436 388 80 69 chr1 57589877 57590386 -139605046 + FordPrefect_a DNA Tip100 44 744 -939 1 1024 229 306 96 14 chr1 57590417 57590490 -139604942 + FordPrefect DNA Tip100 877 955 -728 1 1024 190 138 17 17 chr1 57590600 57590659 -139604773 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1024 1072 308 82 18 chr1 57590662 57591165 -139604267 + FordPrefect DNA Tip100 1098 1632 -51 1 1024 277 371 65 41 chr1 57591463 57591798 -139603634 - L2b LINE L2 -4 3383 3047 1 1024 279 54 0 0 chr1 57592501 57592538 -139602894 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1024 188 315 108 11 chr1 57593240 57593333 -139602099 - MIRb SINE MIR -101 167 66 1 1024 258 56 0 0 chr1 57595043 57595079 -139600353 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1024 1108 257 61 65 chr1 57596500 57596852 -139598580 - ORR1E LTR MaLR 0 379 2 1 1024 879 262 4 98 chr1 57596897 57597142 -139598290 + ID_B1 SINE B4 2 223 -1 1 1024 1115 117 1 3 chr1 57598752 57599621 -139595811 + (TG)n Simple_repeat Simple_repeat 1 866 0 1 1024 580 303 49 49 chr1 57599775 57600021 -139595411 - MER121 Unknown Unknown -89 323 78 1 1024 215 100 50 0 chr1 57600233 57600273 -139595159 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1024 905 139 14 27 chr1 57600278 57600426 -139595006 - B1_Mm SINE Alu -1 146 1 1 1024 610 209 65 36 chr1 57600438 57600577 -139594855 - ID_B1 SINE B4 0 224 82 1 1024 23 0 0 0 chr1 57601302 57601325 -139594107 + AT_rich Low_complexity Low_complexity 1 23 0 1 1024 472 280 16 8 chr1 57601578 57601704 -139593728 + B1F SINE Alu 22 148 -1 1 1024 2464 133 43 21 chr1 57602014 57602435 -139592997 + RLTR24 LTR ERV1 1 430 -99 1 1024 266 331 64 47 chr1 57602529 57602700 -139592732 - MIR SINE MIR -50 212 39 1 1024 639 314 78 25 chr1 57602839 57603235 -139592197 - L1ME3B LINE L1 -326 5914 5498 1 1024 262 254 34 0 chr1 57603281 57603340 -139592092 + MTEa LTR MaLR 60 120 -259 1 1024 417 326 96 32 chr1 57603386 57603636 -139591796 + MT2A LTR ERVL 200 465 -68 1 1024 510 215 0 0 chr1 57603940 57604070 -139591362 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1024 542 253 36 60 chr1 57604070 57604238 -139591194 - RSINE1 SINE B4 0 165 2 1 1024 764 265 64 106 chr1 57604338 57604869 -139590563 - L1ME3B LINE L1 -1288 4858 4350 1 1024 414 339 88 22 chr1 57604901 57605127 -139590305 + MLT1F2 LTR MaLR 1 241 -319 1 1024 296 272 61 12 chr1 57605239 57605321 -139590111 + MLT1F2 LTR MaLR 471 556 -97 1 1024 215 338 0 13 chr1 57605324 57605402 -139590030 + CT-rich Low_complexity Low_complexity 4 80 0 1 1024 999 90 0 0 chr1 57605403 57605547 -139589885 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 1 1024 213 108 0 0 chr1 57605549 57605586 -139589846 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1024 356 280 64 11 chr1 57605674 57605768 -139589664 - PB1D10 SINE Alu -9 108 10 1 1024 459 305 35 0 chr1 57606223 57606426 -139589006 - L1ME3B LINE L1 -2309 3837 3628 1 1024 29 60 0 0 chr1 57606484 57606534 -139588898 + AT_rich Low_complexity Low_complexity 1 50 0 1 1024 636 252 32 78 chr1 57606567 57606762 -139588670 - B3A SINE B2 -3 195 23 1 1024 222 37 0 0 chr1 57606762 57606789 -139588643 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1024 352 167 40 6 chr1 57606790 57606869 -139588563 - B1_Mus2 SINE Alu 0 149 68 1 1024 21 0 0 0 chr1 57606886 57606907 -139588525 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 351 316 82 25 chr1 57606919 57607341 -139588091 - L1ME3B LINE L1 -2643 3503 3053 1 1024 273 57 0 0 chr1 57607708 57607743 -139587689 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1024 312 27 0 0 chr1 57607836 57607873 -139587559 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1024 207 0 0 0 chr1 57608972 57608995 -139586437 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1024 600 132 44 0 chr1 57608995 57609086 -139586346 - B1_Mur2 SINE Alu -5 144 50 1 1024 21353 141 20 12 chr1 57609090 57615279 -139580153 - Lx LINE L1 0 6654 365 1 1024 643 188 306 0 chr1 57615560 57615720 -139579712 - B3 SINE B2 -6 210 2 1 1024 1508 184 61 130 chr1 57616795 57617202 -139578230 - ORR1B1 LTR MaLR -8 386 8 1 1024 351 309 27 59 chr1 57617442 57617628 -139577804 - L1M5 LINE L1 -2184 3962 3783 1 1024 27 49 0 0 chr1 57617965 57618006 -139577426 + AT_rich Low_complexity Low_complexity 1 41 0 1 1024 699 293 21 47 chr1 57618929 57619162 -139576270 + Lx9 LINE L1 6318 6544 -1100 1 1024 485 279 80 67 chr1 57619181 57619481 -139575951 + Lx9 LINE L1 7268 7571 -73 1 1024 234 0 0 0 chr1 57619626 57619652 -139575780 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1024 1000 102 0 7 chr1 57619653 57619791 -139575641 - B1_Mur4 SINE Alu -13 137 1 1 1024 574 242 70 0 chr1 57619856 57620013 -139575419 - Lx9 LINE L1 -405 7239 7072 1 1024 1064 114 0 7 chr1 57620573 57620723 -139574709 + B1_Mur4 SINE Alu 1 149 -1 1 1024 23 0 0 0 chr1 57621088 57621111 -139574321 + GC_rich Low_complexity Low_complexity 1 23 0 1 1024 333 257 0 13 chr1 57622201 57622276 -139573156 - Lx8 LINE L1 -227 7246 7173 1 1024 897 234 0 0 chr1 57622300 57622484 -139572948 - B3 SINE B2 -6 210 27 1 1024 467 302 116 24 chr1 57622531 57622738 -139572694 - MLT1D LTR MaLR -10 495 270 1 1024 244 288 92 14 chr1 57624212 57624353 -139571079 - L1MC LINE L1 -2396 5486 5335 1 1024 523 250 52 7 chr1 57624719 57624872 -139570560 - MTE2a LTR MaLR -8 371 212 1 1024 2912 150 153 40 chr1 57624887 57625566 -139569866 + RMER6A LTR ERVK 1 756 0 1 1024 1096 121 168 0 chr1 57625666 57625856 -139569576 + URR1A DNA MER1_type 5 226 0 1 1024 198 71 0 0 chr1 57626685 57626713 -139568719 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1024 247 269 76 8 chr1 57626810 57626941 -139568491 - L1M4 LINE L1 -1870 4276 4137 1 1024 235 296 80 25 chr1 57627035 57627198 -139568234 - Tigger8 DNA MER2_type -298 368 197 1 1024 578 276 80 13 chr1 57627685 57627924 -139567508 + L1MC1 LINE L1 6071 6325 -8 1 1024 225 83 0 0 chr1 57629271 57629307 -139566125 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1024 461 17 17 0 chr1 57630161 57630219 -139565213 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1024 221 258 53 9 chr1 57631682 57631738 -139563694 + PB1D7 SINE Alu 30 85 -32 1 1024 180 0 0 0 chr1 57631738 57631758 -139563674 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1024 217 284 0 102 chr1 57631758 57631799 -139563633 + PB1D10 SINE Alu 86 117 0 1 1024 553 218 12 0 chr1 57631816 57631981 -139563451 + GA-rich Low_complexity Low_complexity 4 170 0 1 1024 646 244 0 0 chr1 57632092 57632215 -139563217 + B1_Mur1 SINE Alu 1 123 -26 1 1024 323 353 43 29 chr1 57632215 57632231 -139563201 + ID_B1 SINE B4 82 222 -2 1 1024 1997 84 6 83 chr1 57633415 57633752 -139561680 + ORR1A3 LTR MaLR 16 326 0 1 1024 300 262 126 40 chr1 57634242 57634417 -139561015 + L1MC LINE L1 5173 5362 -784 1 1024 787 249 33 47 chr1 57634474 57634685 -139560747 + B3 SINE B2 9 216 0 1 1024 700 209 64 55 chr1 57634732 57634934 -139560498 + L1MC LINE L1 5462 5665 -515 1 1024 1339 90 6 0 chr1 57635054 57635231 -139560201 - B2_Mm2 SINE B2 -16 179 2 1 1024 376 294 9 0 chr1 57635351 57635460 -139559972 - RSINE1 SINE B4 -15 150 41 1 1024 606 250 68 42 chr1 57635501 57635693 -139559739 - B3A SINE B2 -1 197 1 1 1024 616 198 9 0 chr1 57637697 57637803 -139557629 + PB1D10 SINE Alu 4 110 -7 1 1024 4898 202 41 104 chr1 57637911 57639574 -139555858 - RMER1A Other Other -12 1018 1 1 1024 504 0 0 0 chr1 57639719 57639775 -139555657 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 1 1024 2209 151 19 11 chr1 57639948 57640310 -139555122 + ORR1B2 LTR MaLR 3 367 0 1 1024 321 47 0 0 chr1 57641271 57641314 -139554118 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1024 2744 37 3 38 chr1 57641938 57642277 -139553155 - IAPLTR2b LTR ERVK 0 327 1 1 1024 14317 64 14 0 chr1 57642279 57644057 -139551375 - IAPEz-int LTR ERVK -2 6479 4678 1 1024 1962 77 0 0 chr1 57644075 57644321 -139551111 - IAPEz-int LTR ERVK -5183 2497 2252 1 1024 937 43 26 0 chr1 57644322 57644438 -139550994 - IAPEz-int LTR ERVK -5004 1477 1359 1 1024 3620 65 1 16 chr1 57644438 57645016 -139550416 - IAPEz-int LTR ERVK -5819 662 168 1 1024 235 309 0 0 chr1 57645016 57645071 -139550361 - RLTR27 LTR ERVK -34 275 221 1 1024 1195 115 37 76 chr1 57645071 57645348 -139550084 - IAPEz-int LTR ERVK -7331 250 9 1 1024 2297 35 8 41 chr1 57645349 57645675 -139549757 - IAPLTR2b LTR ERVK 0 327 10 1 1024 244 293 76 35 chr1 57647525 57647670 -139547762 + MIR SINE MIR 87 237 -25 1 1024 395 295 87 27 chr1 57648022 57648172 -139547260 + B3A SINE B2 6 164 -34 2 1024 303 28 0 0 chr1 57648179 57648215 -139547217 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1024 723 269 34 64 chr1 57648519 57648817 -139546615 + MTD LTR MaLR 114 402 -17 2 1024 350 42 21 0 chr1 57648969 57649017 -139546415 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1024 333 0 0 0 chr1 57649017 57649054 -139546378 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1024 240 326 85 45 chr1 57649340 57649539 -139545893 - MER21B LTR ERV1 -452 411 205 2 1024 283 231 24 60 chr1 57649674 57649757 -139545675 - MER21B LTR ERV1 -783 80 1 2 1024 188 324 14 14 chr1 57652711 57652780 -139542652 + MIRc SINE MIR 157 225 -43 2 1024 441 0 0 0 chr1 57652881 57652930 -139542502 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1024 373 322 88 18 chr1 57652934 57653206 -139542226 + L1MA5A LINE L1 5548 5838 -459 2 1024 23 54 0 0 chr1 57653484 57653521 -139541911 + AT_rich Low_complexity Low_complexity 1 37 0 2 1024 809 176 7 21 chr1 57653531 57653676 -139541756 + B1_Mur2 SINE Alu 2 144 -5 2 1024 414 0 0 0 chr1 57654041 57654087 -139541345 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1024 231 36 0 0 chr1 57654087 57654114 -139541318 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1024 351 0 0 0 chr1 57654115 57654154 -139541278 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1024 666 305 115 22 chr1 57654389 57654798 -139540634 + L1ME3 LINE L1 5620 6066 -96 2 1024 252 0 0 0 chr1 57654815 57654843 -139540589 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1024 470 307 72 54 chr1 57655273 57655607 -139539825 + MTE2a LTR MaLR 52 419 0 2 1024 262 320 60 41 chr1 57655732 57655982 -139539450 - L2a LINE L2 -16 3359 3103 2 1024 466 224 30 7 chr1 57656139 57656274 -139539158 + L1MB7 LINE L1 5111 5248 -898 2 1024 1623 242 31 40 chr1 57656354 57656775 -139538657 + L1MB7 LINE L1 5689 6097 -87 2 1024 207 0 0 0 chr1 57656775 57656798 -139538634 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1024 1623 242 31 40 chr1 57656798 57656853 -139538579 + L1MB7 LINE L1 6098 6160 -24 2 1024 200 200 0 0 chr1 57657250 57657285 -139538147 + GA-rich Low_complexity Low_complexity 1 35 0 2 1024 1525 233 19 16 chr1 57658332 57658699 -139536733 + Lx9 LINE L1 7106 7473 -171 2 1024 601 280 91 8 chr1 57658731 57658972 -139536460 - MER2 DNA MER2_type -83 262 2 2 1024 3365 28 21 0 chr1 57659201 57659589 -139535843 - MTA_Mm LTR MaLR 0 396 1 2 1024 6042 48 0 0 chr1 57659747 57660472 -139534960 - L1Md_F3 LINE L1 -135 5748 5024 2 1024 7337 31 0 2 chr1 57660472 57661321 -139534111 + L1Md_F3 LINE L1 5724 6570 -14 2 1024 2334 122 51 0 chr1 57661466 57661820 -139533612 + Lx3C LINE L1 6603 6974 -2 2 1024 2680 193 72 23 chr1 57662228 57662884 -139532548 - L1_Rod LINE L1 -51 5796 5109 2 1024 596 286 92 58 chr1 57662946 57663346 -139532086 - RLTR11A2 LTR ERVK -3 524 111 2 1024 597 255 126 26 chr1 57663459 57663729 -139531703 + Lx9 LINE L1 7346 7642 -2 2 1024 280 275 38 96 chr1 57664570 57664727 -139530705 - B1F1 SINE Alu 0 149 2 2 1024 192 40 0 0 chr1 57665066 57665091 -139530341 + (G)n Simple_repeat Simple_repeat 1 25 0 2 1024 330 307 87 0 chr1 57665510 57665637 -139529795 - MLT1A0 LTR MaLR -224 141 4 2 1024 253 320 97 13 chr1 57665746 57665905 -139529527 + MLT1C LTR MaLR 219 454 -13 2 1024 21 0 0 0 chr1 57667434 57667455 -139527977 + AT_rich Low_complexity Low_complexity 1 21 0 2 1024 336 200 0 0 chr1 57667561 57667636 -139527796 + (CAT)n Simple_repeat Simple_repeat 3 77 0 2 1024 236 281 0 0 chr1 57668039 57668096 -139527336 + (CAT)n Simple_repeat Simple_repeat 3 59 0 2 1024 1896 181 71 14 chr1 57668515 57668868 -139526564 - ORR1D1 LTR MaLR 0 374 2 2 1024 212 289 0 0 chr1 57670604 57670649 -139524783 + C-rich Low_complexity Low_complexity 1 45 0 2 1024 399 220 194 50 chr1 57670748 57670949 -139524483 - L1MA6 LINE L1 -325 5975 5746 2 1024 238 139 0 0 chr1 57671373 57671409 -139524023 - L1MA6 LINE L1 -549 5748 5713 2 1025 524 334 82 85 chr1 57671786 57672375 -139523057 - MER21B LTR ERV1 -151 712 126 2 1025 691 180 0 0 chr1 57672729 57672840 -139522592 + B1_Mur3 SINE Alu 1 111 -38 2 1025 4492 127 3 22 chr1 57673034 57673744 -139521688 - L1_Mur2 LINE L1 -980 4897 4202 2 1025 2514 158 5 0 chr1 57673742 57674146 -139521286 + L1_Mur2 LINE L1 5244 5649 -228 2 1025 2179 166 23 5 chr1 57674562 57674949 -139520483 - ORR1B1 LTR MaLR 0 394 1 2 1025 247 362 81 25 chr1 57675181 57675416 -139520016 - L4 LINE RTE -188 1841 1594 2 1025 609 317 156 33 chr1 57675607 57675695 -139519737 + MER70B LTR ERVL 11 98 -480 2 1025 2249 101 7 0 chr1 57675695 57676002 -139519430 - RLTR27 LTR ERVK 0 309 1 2 1025 609 317 156 33 chr1 57676002 57676304 -139519128 + MER70B LTR ERVL 99 449 -129 2 1025 290 278 164 53 chr1 57676503 57676674 -139518758 + L1MC4 LINE L1 7481 7670 -372 2 1025 931 142 69 19 chr1 57676982 57677198 -139518234 - Lx4B LINE L1 -4 7054 6828 2 1025 347 216 50 20 chr1 57677206 57677305 -139518127 - ORR1D1 LTR MaLR -2 372 271 2 1025 2816 136 67 21 chr1 57677305 57677739 -139517693 + RLTR20B2 LTR ERVK 1 464 -96 2 1025 546 16 0 0 chr1 57677739 57677802 -139517630 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1025 2816 136 67 21 chr1 57677802 57677902 -139517530 + RLTR20B2 LTR ERVK 465 560 0 2 1025 533 148 0 114 chr1 57677981 57678095 -139517337 - ORR1D1 LTR MaLR -272 102 2 2 1025 2755 45 0 9 chr1 57678141 57678475 -139516957 - L1Md_F2 LINE L1 0 6582 6252 2 1025 355 257 0 0 chr1 57678506 57678580 -139516852 + RSINE1 SINE B4 3 76 -89 2 1025 292 276 13 0 chr1 57678698 57678774 -139516658 + RSINE1 SINE B4 76 152 -13 2 1025 257 250 135 54 chr1 57680696 57680844 -139514588 - MER5A1 DNA MER1_type -3 163 4 2 1025 456 276 70 7 chr1 57681144 57681286 -139514146 - RSINE1 SINE B4 -12 153 3 2 1025 634 220 18 30 chr1 57681379 57681543 -139513889 - ID_B1 SINE B4 -60 164 3 2 1025 252 0 0 0 chr1 57682430 57682458 -139512974 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1025 234 0 0 0 chr1 57682828 57682854 -139512578 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 2 1025 209 307 113 9 chr1 57682952 57683067 -139512365 + L2a LINE L2 2050 2176 -1243 2 1025 3836 100 0 4 chr1 57683382 57683912 -139511520 - Lx LINE L1 -3 6651 6124 2 1025 4897 116 11 2 chr1 57683912 57684763 -139510669 - Lx LINE L1 -724 5930 5071 2 1025 192 343 86 32 chr1 57685000 57685220 -139510212 + L2a LINE L2 2940 3171 -255 2 1025 395 207 0 35 chr1 57685375 57685457 -139509975 - MLT1G3 LTR MaLR -275 320 242 2 1025 695 173 60 0 chr1 57685457 57685590 -139509842 + ORR1D1 LTR MaLR 1 141 -233 2 1025 744 242 0 29 chr1 57686390 57686560 -139508872 + ORR1D1 LTR MaLR 138 302 -72 2 1025 250 281 0 11 chr1 57686700 57686790 -139508642 + CT-rich Low_complexity Low_complexity 1 89 0 2 1025 323 228 119 0 chr1 57686882 57686983 -139508449 + ORR1D1 LTR MaLR 258 370 0 2 1025 956 131 39 17 chr1 57686983 57687161 -139508271 + ORR1D1-int LTR MaLR 1 182 -1188 2 1025 303 233 27 27 chr1 57687142 57687217 -139508215 + ORR1D1-int LTR MaLR 748 822 -548 2 1025 1705 180 34 45 chr1 57687217 57687595 -139507837 - ORR1D1 LTR MaLR 0 374 1 2 1025 215 206 0 0 chr1 57688535 57688589 -139506843 + MIRb SINE MIR 114 167 -101 2 1025 617 240 312 27 chr1 57688820 57689234 -139506198 - L1MC1 LINE L1 -16 6317 5786 2 1025 597 303 37 106 chr1 57690059 57690332 -139505100 - MTE2b LTR MaLR -108 271 18 2 1025 23 0 0 0 chr1 57690770 57690793 -139504639 + GC_rich Low_complexity Low_complexity 1 23 0 2 1025 324 0 0 0 chr1 57690902 57690938 -139504494 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1025 698 256 100 5 chr1 57691703 57691903 -139503529 + MTEb LTR MaLR 1 219 -160 2 1025 737 215 38 0 chr1 57692490 57692648 -139502784 + MTE2a LTR MaLR 1 164 -215 2 1025 396 0 0 0 chr1 57692823 57692867 -139502565 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1025 386 319 66 46 chr1 57692929 57693126 -139502306 + MER46C DNA MER2_type 59 259 -79 2 1025 29 0 0 0 chr1 57693153 57693182 -139502250 + AT_rich Low_complexity Low_complexity 1 29 0 2 1025 2610 156 48 8 chr1 57693608 57694105 -139501327 + RLTR11A LTR ERVK 12 528 0 2 1025 536 269 49 103 chr1 57696606 57696809 -139498623 - B3A SINE B2 -1 197 6 2 1025 202 258 0 58 chr1 57696877 57696980 -139498452 + C-rich Low_complexity Low_complexity 3 99 0 2 1025 244 266 112 26 chr1 57697283 57697399 -139498033 + RSINE1 SINE B4 36 161 -4 2 1025 789 237 6 28 chr1 57698171 57698353 -139497079 + B4A SINE B4 31 208 -84 2 1025 2269 132 6 8 chr1 57698359 57698719 -139496713 - ORR1B2 LTR MaLR -8 359 1 2 1025 370 191 0 0 chr1 57698719 57698781 -139496651 + B4A SINE B4 207 268 -24 2 1025 240 111 0 0 chr1 57698781 57698817 -139496615 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1025 258 81 0 0 chr1 57698828 57698865 -139496567 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1025 754 135 7 7 chr1 57700287 57700429 -139495003 + (GA)n Simple_repeat Simple_repeat 1 142 0 2 1025 228 282 14 14 chr1 57701055 57701127 -139494305 + Charlie24 DNA MER1_type 2359 2430 -20 2 1025 462 18 0 0 chr1 57701172 57701227 -139494205 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1025 1632 299 124 36 chr1 57701978 57703051 -139492381 + L1MB7 LINE L1 3936 5102 -1044 2 1025 372 242 246 0 chr1 57703058 57703208 -139492224 + ID_B1 SINE B4 3 189 -35 2 1025 460 195 8 17 chr1 57703241 57703361 -139492071 + GA-rich Low_complexity Low_complexity 2 120 0 2 1025 1008 210 24 0 chr1 57703361 57703566 -139491866 + B3 SINE B2 7 216 0 2 1025 279 133 0 0 chr1 57703603 57703648 -139491784 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 2 1025 560 312 18 56 chr1 57703703 57703970 -139491462 + B4A SINE B4 34 284 -8 2 1025 698 181 36 0 chr1 57704107 57704245 -139491187 + B1_Mur4 SINE Alu 1 143 -7 2 1025 787 323 63 15 chr1 57704348 57704415 -139491017 + L1MB7 LINE L1 5609 5680 -504 2 1025 243 0 0 0 chr1 57704415 57704442 -139490990 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1025 787 323 63 15 chr1 57704442 57704848 -139490584 + L1MB7 LINE L1 5681 6104 -80 2 1025 389 303 52 83 chr1 57706359 57706496 -139488936 - Lx8 LINE L1 0 7473 7333 2 1025 408 40 0 0 chr1 57706496 57706546 -139488886 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1025 389 303 52 83 chr1 57706546 57706660 -139488772 - Lx8 LINE L1 -141 7332 7230 2 1025 2494 172 42 12 chr1 57706802 57706843 -139488589 - RLTR20B1 LTR ERVK -53 510 470 2 1025 453 92 0 0 chr1 57706843 57706919 -139488513 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1025 2494 172 42 12 chr1 57706919 57707372 -139488060 - RLTR20B1 LTR ERVK -94 469 3 2 1025 4148 162 66 16 chr1 57707372 57708206 -139487226 - MYSERV16_I-int LTR ERVK 0 2326 1451 2 1025 1057 218 19 5 chr1 57708346 57708558 -139486874 - B3 SINE B2 0 216 2 2 1025 307 340 31 25 chr1 57708702 57708865 -139486567 - Lx8 LINE L1 -1116 6357 6194 2 1025 719 292 40 40 chr1 57708886 57709139 -139486293 - RMER15-int LTR ERVL -2613 2386 2134 2 1025 330 26 0 0 chr1 57709221 57709260 -139486172 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1025 396 0 0 0 chr1 57709260 57709303 -139486129 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1025 468 250 65 0 chr1 57709308 57709416 -139486016 - PB1D10 SINE Alu -2 115 1 3 1025 913 289 4 0 chr1 57710071 57710306 -139485126 - RMER15-int LTR ERVL -3387 1612 1377 2 1025 548 234 87 19 chr1 57710439 57710600 -139484832 - RMER15-int LTR ERVL -4343 656 485 2 1025 531 316 93 50 chr1 57711169 57711449 -139483983 + B4 SINE B4 1 292 0 3 1025 255 79 0 0 chr1 57711461 57711499 -139483933 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1025 483 268 122 7 chr1 57711721 57711860 -139483572 + RSINE1 SINE B4 11 165 0 3 1025 411 216 0 0 chr1 57711860 57711976 -139483456 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 1025 1687 141 4 8 chr1 57712026 57712291 -139483141 + L1VL1 LINE L1 3 266 -6156 3 1025 975 193 0 0 chr1 57712291 57712467 -139482965 + L1Md_F LINE L1 383 558 -5961 3 1025 8673 69 83 4 chr1 57712455 57713637 -139481795 + L1_Mm LINE L1 4309 5586 -297 3 1025 7466 63 23 12 chr1 57713637 57714611 -139480821 + L1Md_F2 LINE L1 5587 6570 -12 3 1025 777 58 0 0 chr1 57714888 57714991 -139480441 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 3 1025 202 29 28 28 chr1 57716255 57716291 -139479141 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1025 1151 15 0 0 chr1 57716998 57717128 -139478304 - B1_Mm SINE Alu -17 130 1 3 1025 1551 157 60 88 chr1 57717226 57717590 -139477842 - ORR1B1 LTR MaLR 0 394 41 3 1025 381 86 0 0 chr1 57718920 57718978 -139476454 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1025 501 141 0 0 chr1 57719138 57719237 -139476195 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1025 203 342 0 0 chr1 57719296 57719369 -139476063 - L2 LINE L2 -1887 1532 1460 3 1025 411 290 0 16 chr1 57719772 57719898 -139475534 - RMER15 LTR ERVL -154 421 298 3 1025 902 72 0 0 chr1 57721105 57721230 -139474202 - B1_Mus2 SINE Alu -9 138 14 3 1025 414 0 0 0 chr1 57721388 57721434 -139473998 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1025 387 326 113 26 chr1 57722515 57722780 -139472652 + L5 LINE RTE 321 608 -1657 3 1025 364 176 22 11 chr1 57722866 57722958 -139472474 + CT-rich Low_complexity Low_complexity 4 96 0 3 1025 282 294 212 32 chr1 57723099 57723377 -139472055 - LTR33 LTR ERVL -180 335 8 3 1025 237 65 0 0 chr1 57723468 57723499 -139471933 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1025 791 269 40 119 chr1 57723818 57724366 -139471066 - RLTR16 LTR ERVK 0 505 1 3 1025 1756 183 14 31 chr1 57724387 57724747 -139470685 + ORR1B1 LTR MaLR 41 394 0 3 1025 465 335 189 20 chr1 57725017 57725361 -139470071 + L5 LINE RTE 1558 1959 -306 3 1025 278 284 11 33 chr1 57725695 57725786 -139469646 + PB1D10 SINE Alu 27 115 -2 3 1025 454 369 16 54 chr1 57725816 57726002 -139469430 + B4 SINE B4 19 197 -95 3 1025 1081 225 55 162 chr1 57726013 57726432 -139469000 + ORR1D1 LTR MaLR 1 374 0 3 1025 185 163 0 44 chr1 57726548 57726593 -139468839 + G-rich Low_complexity Low_complexity 4 46 0 3 1025 197 348 35 92 chr1 57726713 57726887 -139468545 + MIRb SINE MIR 55 218 -50 3 1025 552 30 0 0 chr1 57727391 57727457 -139467975 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1025 393 335 70 48 chr1 57728703 57728973 -139466459 - MLT1G LTR MaLR -14 577 302 3 1025 308 218 69 0 chr1 57729130 57729231 -139466201 - Tigger7 DNA MER2_type -113 2378 2271 3 1025 240 195 128 13 chr1 57729220 57729298 -139466134 - Tigger7 DNA MER2_type -2369 122 36 3 1025 341 316 21 49 chr1 57729784 57729927 -139465505 - MLT1G LTR MaLR -390 159 21 3 1025 738 87 0 0 chr1 57731457 57731560 -139463872 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 1025 237 65 0 0 chr1 57731561 57731592 -139463840 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 3 1025 715 299 48 18 chr1 57732124 57732397 -139463035 + B4A SINE B4 2 282 -10 3 1025 390 310 18 58 chr1 57734226 57734452 -139460980 + LTR16E1 LTR ERVL 317 533 -5 3 1025 256 321 24 0 chr1 57735359 57735443 -139459989 + MamRep38 DNA hAT 209 294 -1 3 1025 233 301 14 0 chr1 57735651 57735724 -139459708 - MLT1F1 LTR MaLR -112 457 384 3 1025 1379 196 23 4 chr1 57735837 57736098 -139459334 + Lx9 LINE L1 6686 6951 -693 3 1025 180 0 0 0 chr1 57736122 57736142 -139459290 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1025 531 0 0 0 chr1 57736142 57736200 -139459232 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1025 1519 151 118 3 chr1 57736200 57736506 -139458926 + ORR1D1 LTR MaLR 34 374 0 3 1025 1273 262 176 59 chr1 57736506 57737114 -139458318 + Lx9 LINE L1 6951 7629 -15 3 1025 1114 200 45 0 chr1 57737126 57737326 -139458106 - B3 SINE B2 -3 213 5 3 1025 613 261 67 9 chr1 57737341 57737546 -139457886 - B3A SINE B2 0 216 2 3 1025 359 283 26 9 chr1 57737561 57737675 -139457757 - MER58B DNA MER1_type -217 124 9 3 1025 1149 220 138 22 chr1 57738955 57739310 -139456122 + MTD LTR MaLR 15 405 -14 3 1025 445 387 54 10 chr1 57739318 57739613 -139455819 + MLT1J LTR MaLR 162 469 -43 3 1025 310 287 100 18 chr1 57739900 57740010 -139455422 - PB1D7 SINE Alu -1 119 1 3 1025 317 301 0 0 chr1 57740507 57740590 -139454842 - PB1D10 SINE Alu -15 102 20 3 1025 220 161 48 16 chr1 57741055 57741118 -139454314 + T-rich Low_complexity Low_complexity 2 66 0 3 1025 1013 282 75 7 chr1 57742573 57742987 -139452445 + L1MC4 LINE L1 7040 7481 -561 3 1025 536 260 58 32 chr1 57743062 57743217 -139452215 + B4A SINE B4 1 159 -133 3 1025 378 205 0 0 chr1 57743226 57743309 -139452123 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 1025 339 256 110 16 chr1 57743407 57743534 -139451898 + L1MC4 LINE L1 7696 7834 -208 3 1025 306 0 0 0 chr1 57743869 57743903 -139451529 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3 1025 303 171 39 103 chr1 57743913 57743991 -139451441 + RSINE1 SINE B4 14 86 -79 3 1025 3772 111 7 4 chr1 57744058 57744600 -139450832 + L1_Mus3 LINE L1 6090 6633 -5 3 1025 194 287 97 44 chr1 57744890 57745003 -139450429 + L2c LINE L2 3255 3373 -14 3 1025 991 195 19 42 chr1 57745720 57745934 -139449498 - B3 SINE B2 0 216 8 3 1025 354 23 0 0 chr1 57746030 57746073 -139449359 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1025 847 265 143 0 chr1 57746083 57746328 -139449104 - B4A SINE B4 -4 288 9 3 1025 1474 215 103 3 chr1 57746392 57746760 -139448672 - MTD LTR MaLR -14 405 1 3 1025 821 81 8 0 chr1 57748978 57749101 -139446331 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 3 1025 26 0 0 0 chr1 57749325 57749351 -139446081 + AT_rich Low_complexity Low_complexity 1 26 0 3 1025 670 214 62 0 chr1 57749646 57749791 -139445641 - RSINE1 SINE B4 -5 160 7 3 1025 248 287 35 0 chr1 57750134 57750221 -139445211 - MTEa LTR MaLR 0 379 290 3 1025 258 266 25 0 chr1 57750334 57750413 -139445019 + GA-rich Low_complexity Low_complexity 1 81 0 3 1025 22 80 0 0 chr1 57750985 57751035 -139444397 + AT_rich Low_complexity Low_complexity 1 50 0 3 1025 251 273 34 0 chr1 57751613 57751701 -139443731 + L2a LINE L2 3336 3426 0 3 1025 380 206 0 0 chr1 57751858 57751926 -139443506 + ID4_ SINE ID 5 72 -11 3 1025 231 293 13 0 chr1 57751927 57752002 -139443430 + GA-rich Low_complexity Low_complexity 4 79 0 3 1025 8666 135 13 11 chr1 57752638 57754959 -139440473 - Lx4B LINE L1 -90 6968 4636 3 1025 266 323 56 16 chr1 57754959 57755085 -139440347 - B1F SINE Alu -18 131 1 3 1025 454 287 14 7 chr1 57755170 57755314 -139440118 + B1F2 SINE Alu 2 146 -3 3 1025 644 246 101 87 chr1 57757646 57757922 -139437510 - B4A SINE B4 -12 280 1 3 1025 2619 153 191 25 chr1 57758000 57758524 -139436908 - RMER19C LTR ERVK 0 611 1 3 1025 4870 69 2 11 chr1 57758597 57759225 -139436207 + L1_Mus1 LINE L1 5946 6567 0 3 1025 284 147 0 42 chr1 57759248 57759319 -139436113 + A-rich Low_complexity Low_complexity 1 68 0 3 1025 456 229 10 0 chr1 57759324 57759420 -139436012 + ID_B1 SINE B4 80 176 -48 3 1025 726 69 0 0 chr1 57762792 57762893 -139432539 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 3 1025 189 0 0 0 chr1 57763233 57763254 -139432178 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1025 644 135 9 0 chr1 57763516 57763627 -139431805 + (TC)n Simple_repeat Simple_repeat 1 112 0 3 1025 342 319 14 28 chr1 57763653 57763713 -139431719 - ID_B1 SINE B4 0 224 163 3 1025 1159 44 0 0 chr1 57763713 57763850 -139431582 - B1_Mm SINE Alu -10 137 1 3 1025 342 319 14 28 chr1 57763850 57763934 -139431498 - ID_B1 SINE B4 -62 162 82 3 1025 711 128 0 0 chr1 57764090 57764096 -139431336 + (GA)n Simple_repeat Simple_repeat 2 7 0 3 1025 285 51 0 0 chr1 57764096 57764135 -139431297 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1025 711 128 0 0 chr1 57764135 57764276 -139431156 + (GA)n Simple_repeat Simple_repeat 2 142 0 3 1025 239 338 137 30 chr1 57764734 57764902 -139430530 - MLT1J1 LTR MaLR -167 277 92 3 1025 1195 43 0 0 chr1 57765577 57765715 -139429717 - B1_Mm SINE Alu -9 138 1 3 1025 30 27 0 0 chr1 57765715 57765752 -139429680 + AT_rich Low_complexity Low_complexity 1 37 0 3 1025 807 157 15 0 chr1 57765752 57765886 -139429546 + B1_Mur3 SINE Alu 13 148 -1 3 1025 225 244 0 0 chr1 57765961 57766002 -139429430 + PB1D7 SINE Alu 2 42 -78 3 1025 3282 189 75 30 chr1 57766022 57766760 -139428672 + RLTR40 LTR ERVK 40 810 -7 3 1025 684 157 0 0 chr1 57766753 57766868 -139428564 + B1_Mur2 SINE Alu 25 139 -10 3 1025 387 56 0 0 chr1 57766870 57766924 -139428508 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3 1025 522 0 0 0 chr1 57766924 57766982 -139428450 + (TGG)n Simple_repeat Simple_repeat 3 60 0 3 1025 452 229 27 9 chr1 57766984 57767094 -139428338 - RSINE1 SINE B4 -43 122 11 3 1025 24 0 0 0 chr1 57767104 57767128 -139428304 + AT_rich Low_complexity Low_complexity 1 24 0 3 1025 183 156 0 0 chr1 57768101 57768133 -139427299 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1025 429 285 77 0 chr1 57768142 57768272 -139427160 - RSINE1 SINE B4 -13 152 13 4 1025 242 316 0 0 chr1 57768910 57768986 -139426446 - ID4 SINE ID -4 79 4 4 1025 396 0 0 0 chr1 57769816 57769860 -139425572 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1025 213 39 0 0 chr1 57769949 57769975 -139425457 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1025 441 0 0 0 chr1 57770362 57770411 -139425021 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1025 4808 55 0 0 chr1 57770497 57771076 -139424356 + L1_Mus1 LINE L1 5989 6567 0 4 1025 183 307 79 0 chr1 57771689 57771790 -139423642 + MIR SINE MIR 9 117 -145 4 1025 2010 162 7 66 chr1 57772125 57772535 -139422897 + ORR1B1 LTR MaLR 1 386 -8 4 1025 366 232 141 47 chr1 57773994 57774143 -139421289 + RSINE1 SINE B4 3 165 0 4 1025 780 168 55 12 chr1 57774628 57774791 -139420641 + URR1B DNA MER1_type 26 195 -30 4 1025 273 270 0 13 chr1 57775266 57775341 -139420091 - MLT2B4 LTR ERVL -482 74 1 4 1025 452 210 15 22 chr1 57775674 57775924 -139419508 + CT-rich Low_complexity Low_complexity 1 248 0 4 1025 425 324 97 39 chr1 57776255 57776669 -139418763 + L1MA9 LINE L1 5821 6258 -54 4 1025 628 218 118 78 chr1 57777076 57777280 -139418152 + B3 SINE B2 2 213 -3 4 1025 4267 164 20 140 chr1 57777771 57779319 -139416113 + MusHAL1 LINE L1 761 2213 -3673 4 1025 261 0 0 0 chr1 57779319 57779348 -139416084 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1025 7235 148 27 92 chr1 57779348 57781347 -139414085 + MusHAL1 LINE L1 2214 3910 -4 4 1025 7931 56 9 0 chr1 57779393 57780369 -139415063 - L1Md_F2 LINE L1 -11 6571 5587 4 1025 37 23 0 0 chr1 57781577 57781621 -139413811 + AT_rich Low_complexity Low_complexity 1 44 0 4 1025 21 71 0 0 chr1 57781772 57781814 -139413618 + AT_rich Low_complexity Low_complexity 1 42 0 4 1025 528 303 65 29 chr1 57782423 57782593 -139412839 + ID_B1 SINE B4 46 221 -3 4 1025 252 320 30 10 chr1 57782711 57782812 -139412620 - HERV16-int LTR ERVL -2113 2883 2781 4 1025 257 274 0 0 chr1 57783128 57783190 -139412242 + Cheshire DNA MER1_type 174 235 -2185 4 1025 243 234 0 0 chr1 57783248 57783372 -139412060 + (TTGTG)n Simple_repeat Simple_repeat 1 124 0 4 1025 548 119 0 38 chr1 57783426 57783531 -139411901 + RMER15 LTR ERVL 471 571 -4 4 1025 5276 237 98 13 chr1 57783531 57785026 -139410406 + RMER15-int LTR ERVL 11 1632 -3367 4 1025 9035 181 30 38 chr1 57785659 57787422 -139408010 + RMER15-int LTR ERVL 1988 3736 -1263 4 1025 1732 149 72 30 chr1 57787429 57787594 -139407838 + ORR1B1 LTR MaLR 41 223 -171 4 1025 3651 160 78 3 chr1 57787594 57788238 -139407194 - RLTR17 LTR ERVK 0 692 1 4 1025 1732 149 72 30 chr1 57788238 57788404 -139407028 + ORR1B1 LTR MaLR 224 386 -8 4 1025 3347 217 91 44 chr1 57788408 57788783 -139406649 + RMER15-int LTR ERVL 3732 4115 -884 4 1025 863 120 98 0 chr1 57788783 57788916 -139406516 + B1_Mus1 SINE Alu 3 148 0 4 1025 3347 217 91 44 chr1 57788916 57789398 -139406034 + RMER15-int LTR ERVL 4116 4629 -370 4 1025 1412 201 74 19 chr1 57789416 57789741 -139405691 + RMER15 LTR ERVL 233 575 0 4 1025 211 181 28 0 chr1 57789766 57789838 -139405594 + (TTGTG)n Simple_repeat Simple_repeat 4 77 0 4 1025 189 0 0 0 chr1 57789836 57789857 -139405575 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1025 404 187 24 29 chr1 57789927 57790358 -139405074 + (TTGTG)n Simple_repeat Simple_repeat 1 428 0 4 1025 388 176 11 56 chr1 57790375 57790555 -139404877 + (TTGTG)n Simple_repeat Simple_repeat 1 172 0 4 1025 280 326 67 93 chr1 57791114 57791307 -139404125 + MTEa LTR MaLR 1 188 -191 4 1025 262 325 123 88 chr1 57791307 57791488 -139403944 + MLT2B3 LTR ERVL 1 387 -167 4 1025 300 364 0 0 chr1 57791726 57791814 -139403618 - HERV16-int LTR ERVL -3429 1567 1480 4 1025 390 365 71 33 chr1 57792059 57792453 -139402979 - HERV16-int LTR ERVL -3865 1131 723 4 1025 468 0 0 0 chr1 57793850 57793902 -139401530 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 1025 430 306 92 64 chr1 57794516 57794799 -139400633 + B4A SINE B4 2 292 0 4 1025 549 239 0 0 chr1 57795878 57796016 -139399416 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 1025 682 282 5 56 chr1 57796035 57796117 -139399315 - ID_B1 SINE B4 -21 203 127 4 1025 305 24 24 0 chr1 57796117 57796159 -139399273 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1025 682 282 5 56 chr1 57796159 57796290 -139399142 - ID_B1 SINE B4 -98 126 1 4 1025 182 77 0 0 chr1 57798059 57798085 -139397347 + MIRm SINE MIR 232 257 -19 4 1025 392 309 118 6 chr1 57799294 57799463 -139395969 + MLT2D LTR ERVL 4 191 -223 4 1025 595 216 43 36 chr1 57799508 57799647 -139395785 + ID_B1 SINE B4 81 220 -4 4 1025 221 122 98 39 chr1 57799602 57799653 -139395779 + PB1D10 SINE Alu 64 117 0 4 1025 203 170 21 0 chr1 57799767 57799814 -139395618 + CT-rich Low_complexity Low_complexity 2 49 0 4 1025 215 318 0 0 chr1 57800083 57800146 -139395286 - L2c LINE L2 -20 3367 3305 4 1025 276 315 40 20 chr1 57800165 57800314 -139395118 - Tigger12c DNA MER2_type -2 732 581 4 1025 25 51 0 0 chr1 57800808 57800847 -139394585 + AT_rich Low_complexity Low_complexity 1 39 0 4 1025 357 312 30 42 chr1 57800919 57801086 -139394346 - L1ME3A LINE L1 -1 6172 6008 4 1025 351 0 0 0 chr1 57801423 57801462 -139393970 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1025 360 0 0 0 chr1 57801462 57801501 -139393931 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1025 441 0 0 0 chr1 57801528 57801577 -139393855 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1025 320 216 82 10 chr1 57801609 57801707 -139393725 + L1M1 LINE L1 5738 5842 -458 4 1025 571 272 0 0 chr1 57801806 57801942 -139393490 + ID_B1 SINE B4 82 217 -7 4 1026 180 171 29 0 chr1 57803038 57803073 -139392359 + MIRb SINE MIR 98 133 -135 4 1026 198 103 0 0 chr1 57804052 57804081 -139391351 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 4 1026 1967 215 50 21 chr1 57805015 57805490 -139389942 - RLTR20A LTR ERVK -51 490 2 4 1026 229 326 75 41 chr1 57805758 57805905 -139389527 - MER5A DNA MER1_type -6 183 32 4 1026 482 287 25 0 chr1 57807678 57807835 -139387597 + LTR16C LTR ERVL 320 480 -9 4 1026 532 292 81 81 chr1 57809114 57809558 -139385874 + L1MEf LINE L1 574 1017 -5183 4 1026 594 0 0 0 chr1 57809564 57809630 -139385802 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1026 558 235 139 43 chr1 57809669 57809856 -139385576 + ID_B1 SINE B4 6 210 -14 4 1026 378 293 123 42 chr1 57810040 57810404 -139385028 + L1MEf LINE L1 1331 1703 -4497 4 1026 394 364 100 34 chr1 57810694 57811226 -139384206 + Lx8 LINE L1 6905 7471 -2 4 1026 267 333 153 40 chr1 57811600 57811822 -139383610 - LTR33 LTR ERVL -185 330 84 4 1026 393 70 0 0 chr1 57812245 57812302 -139383130 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1026 198 0 0 0 chr1 57812304 57812326 -139383106 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1026 209 235 0 19 chr1 57812456 57812508 -139382924 + T-rich Low_complexity Low_complexity 3 53 0 4 1026 4023 60 31 6 chr1 57812986 57813504 -139381928 - L1Md_F2 LINE L1 0 6582 6052 4 1026 414 211 96 0 chr1 57813648 57813752 -139381680 + PB1 SINE Alu 11 124 -3 4 1026 496 316 43 60 chr1 57814465 57814882 -139380550 + L1M4 LINE L1 4924 5333 -813 4 1026 580 270 21 82 chr1 57814959 57815153 -139380279 + B3A SINE B2 1 182 -16 4 1026 201 74 0 0 chr1 57815206 57815233 -139380199 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1026 496 319 50 25 chr1 57815364 57815602 -139379830 + L1M4 LINE L1 5570 5813 -366 4 1026 458 229 0 0 chr1 57815811 57815916 -139379516 - PB1D10 SINE Alu 0 117 13 4 1026 7567 108 19 14 chr1 57816027 57817561 -139377871 - Lx LINE L1 -8 6646 5095 4 1026 356 252 20 48 chr1 57818308 57818454 -139376978 - L1MD1 LINE L1 -413 5829 5688 4 1026 2306 95 21 59 chr1 57818472 57818809 -139376623 + ORR1A3 LTR MaLR 3 326 0 4 1026 441 0 0 0 chr1 57819748 57819797 -139375635 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1026 1923 164 105 0 chr1 57819842 57820184 -139375248 + ORR1C1 LTR MaLR 1 378 0 4 1026 281 328 10 103 chr1 57820246 57820450 -139374982 - MLT1J LTR MaLR -203 309 125 4 1026 21 36 0 0 chr1 57821287 57821315 -139374117 + AT_rich Low_complexity Low_complexity 1 28 0 4 1026 367 221 0 0 chr1 57821321 57821398 -139374034 + MER63B DNA AcHobo 312 388 -48 4 1026 311 172 17 0 chr1 57821719 57821777 -139373655 - B4A SINE B4 -71 221 163 4 1026 403 316 92 0 chr1 57821941 57822093 -139373339 + Charlie19a DNA Charlie 66 231 -155 4 1026 807 257 27 84 chr1 57822282 57822579 -139372853 - B4 SINE B4 -10 282 3 4 1026 243 0 0 0 chr1 57822593 57822620 -139372812 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1026 993 279 10 38 chr1 57822620 57822911 -139372521 - Lx5 LINE L1 -19 7031 6749 4 1026 281 325 140 4 chr1 57823178 57823407 -139372025 - L3b LINE CR1 -165 317 58 4 1026 311 0 26 0 chr1 57823775 57823814 -139371618 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 4 1026 616 278 76 96 chr1 57824029 57824383 -139371049 + MLT1B LTR MaLR 1 347 -43 4 1026 248 346 102 40 chr1 57825716 57825731 -139369701 - L1M5 LINE L1 -354 5840 5828 4 1026 430 294 189 0 chr1 57825731 57825884 -139369548 - B3A SINE B2 -16 182 1 4 1026 248 346 116 35 chr1 57825884 57826357 -139369075 - L1M5 LINE L1 -367 5827 5320 4 1026 27 29 0 0 chr1 57826425 57826459 -139368973 + AT_rich Low_complexity Low_complexity 1 34 0 4 1026 262 362 58 58 chr1 57826737 57826960 -139368472 + MER58A DNA MER1_type 2 224 0 4 1026 1193 154 51 0 chr1 57827014 57827228 -139368204 + URR1B DNA MER1_type 1 225 0 4 1026 2639 148 34 2 chr1 57827415 57827823 -139367609 + MTC LTR MaLR 1 421 0 4 1026 429 241 62 0 chr1 57827916 57828028 -139367404 + ID_B1 SINE B4 84 202 -22 4 1026 332 279 78 0 chr1 57828818 57828947 -139366485 - MLT1J-int LTR MaLR -60 1327 1189 4 1026 200 128 0 25 chr1 57829492 57829532 -139365900 + T-rich Low_complexity Low_complexity 2 40 0 4 1026 302 267 135 49 chr1 57829580 57829765 -139365667 + MER121 Unknown Unknown 154 354 -58 4 1026 307 288 99 12 chr1 57830406 57830578 -139364854 + MIR SINE MIR 24 210 -52 4 1026 27 49 0 0 chr1 57831659 57831700 -139363732 + GC_rich Low_complexity Low_complexity 1 41 0 4 1026 23 33 0 0 chr1 57831813 57831843 -139363589 + GC_rich Low_complexity Low_complexity 1 30 0 5 1026 486 0 0 0 chr1 57833352 57833406 -139362026 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1026 297 0 0 0 chr1 57833880 57833913 -139361519 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1026 389 372 70 0 chr1 57835269 57835468 -139359964 + Tigger5 DNA MER2_type 2 214 -2192 5 1026 335 267 12 0 chr1 57835469 57835555 -139359877 + Charlie12 DNA MER1_type 8 94 -2779 5 1026 271 341 0 0 chr1 57835550 57835638 -139359794 - RMER30 DNA MER1_type -108 94 7 5 1026 565 310 13 48 chr1 57835618 57835845 -139359587 + Tigger5 DNA MER2_type 2127 2345 -61 5 1026 351 343 6 11 chr1 57835998 57836175 -139359257 + CT-rich Low_complexity Low_complexity 4 179 0 5 1026 192 299 25 25 chr1 57836489 57836568 -139358864 + L2b LINE L2 3287 3365 -10 5 1026 1411 142 0 26 chr1 57837025 57837256 -139358176 - URR1B DNA MER1_type 0 225 1 5 1026 186 250 73 42 chr1 57838121 57838217 -139357215 - MIRb SINE MIR -59 209 111 5 1026 212 339 101 24 chr1 57838445 57838614 -139356818 - MIRb SINE MIR -72 196 15 5 1026 189 107 0 0 chr1 57838791 57838819 -139356613 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 1026 183 317 115 0 chr1 57839343 57839447 -139355985 + L2 LINE L2 2737 2852 -567 5 1026 241 318 11 22 chr1 57839675 57839765 -139355667 + MER33 DNA MER1_type 9 97 -227 5 1026 684 252 135 29 chr1 57839833 57840078 -139355354 - B4A SINE B4 -12 280 10 5 1026 410 224 133 13 chr1 57840075 57840233 -139355199 + MER33 DNA MER1_type 144 320 -4 5 1026 202 303 64 57 chr1 57842314 57842416 -139353016 + MIRb SINE MIR 61 168 -100 5 1026 618 211 62 0 chr1 57843356 57843484 -139351948 - B1_Mur1 SINE Alu -13 136 1 5 1026 405 0 0 0 chr1 57844682 57844727 -139350705 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1026 288 0 0 0 chr1 57845785 57845817 -139349615 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1026 180 284 67 22 chr1 57845978 57846068 -139349364 + MIRc SINE MIR 55 148 -120 5 1026 227 264 82 0 chr1 57846163 57846273 -139349159 - L1M5 LINE L1 -222 5902 5784 5 1026 1237 54 6 0 chr1 57846404 57846570 -139348862 - L1Md_F3 LINE L1 -14 6570 6404 5 1026 226 293 151 13 chr1 57846688 57846840 -139348592 - MIRb SINE MIR -85 183 11 5 1026 569 203 0 30 chr1 57848474 57848606 -139346826 + B1F2 SINE Alu 19 146 -3 5 1026 180 351 27 0 chr1 57849208 57849282 -139346150 - L2b LINE L2 0 3375 3300 5 1026 209 59 59 0 chr1 57849457 57849491 -139345941 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 5 1026 1183 68 0 0 chr1 57849675 57849822 -139345610 + B1_Mus2 SINE Alu 1 147 0 5 1026 1126 293 121 41 chr1 57850209 57850619 -139344813 - Lx8 LINE L1 -5 7468 7044 5 1026 1703 226 51 24 chr1 57850619 57851126 -139344306 + RLTR11A2 LTR ERVK 4 524 -3 5 1026 1126 293 121 41 chr1 57851126 57851295 -139344137 - Lx8 LINE L1 -430 7043 6843 5 1026 288 325 59 14 chr1 57851547 57851702 -139343730 - MIRb SINE MIR -101 167 6 5 1026 321 291 76 28 chr1 57851731 57851876 -139343556 - L1ME4a LINE L1 -1 6123 5972 5 1026 297 0 0 0 chr1 57852575 57852608 -139342824 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1026 234 0 0 0 chr1 57852608 57852633 -139342799 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1026 213 39 0 0 chr1 57852633 57852658 -139342774 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1026 7188 189 80 36 chr1 57853194 57853701 -139341731 - Lx7 LINE L1 -2 7694 7131 5 1026 2828 164 55 0 chr1 57853701 57854196 -139341236 + RLTR28 LTR ERVL 1 522 -2 5 1026 7188 189 80 36 chr1 57854196 57855269 -139340163 - Lx7 LINE L1 -566 7130 6044 5 1026 347 184 13 38 chr1 57855281 57855360 -139340072 - RLTR28 LTR ERVL -173 351 275 5 1026 206 314 68 10 chr1 57855873 57855976 -139339456 - MIRb SINE MIR -30 238 130 5 1026 202 132 0 26 chr1 57856593 57856632 -139338800 + MIR SINE MIR 17 54 -208 5 1026 200 289 124 15 chr1 57856717 57856854 -139338578 + MIRb SINE MIR 6 157 -111 5 1026 570 203 0 63 chr1 57856985 57857111 -139338321 + PB1D9 SINE Alu 2 119 -1 5 1026 476 247 95 27 chr1 57858658 57858825 -139336607 - B3 SINE B2 -7 209 33 5 1026 192 179 65 97 chr1 57858839 57858901 -139336531 + MIR SINE MIR 103 162 -100 5 1026 216 97 0 0 chr1 57859595 57859626 -139335806 + (CCCCCA)n Simple_repeat Simple_repeat 1 31 0 5 1026 444 77 0 0 chr1 57859635 57859700 -139335732 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1026 252 231 25 37 chr1 57859826 57859907 -139335525 + L1ME3B LINE L1 5918 5997 -243 5 1026 488 273 86 55 chr1 57859907 57860070 -139335362 + B4 SINE B4 70 237 -55 5 1026 625 148 32 16 chr1 57863086 57863210 -139332222 - B3 SINE B2 0 216 91 5 1026 651 290 107 38 chr1 57863294 57863556 -139331876 + B4 SINE B4 1 280 -12 5 1026 865 95 7 7 chr1 57864140 57864288 -139331144 + (TC)n Simple_repeat Simple_repeat 2 149 0 5 1026 302 217 0 24 chr1 57864332 57864417 -139331015 + CT-rich Low_complexity Low_complexity 3 85 0 5 1026 244 287 114 8 chr1 57865543 57865572 -139329860 - B1F2 SINE Alu 0 149 14 5 1026 358 234 96 0 chr1 57865572 57865666 -139329766 - ID_B1 SINE B4 -27 197 95 5 1026 429 167 0 0 chr1 57866307 57866385 -139329047 + (CAT)n Simple_repeat Simple_repeat 2 79 0 5 1026 589 291 93 16 chr1 57867296 57867554 -139327878 + B4A SINE B4 5 282 -10 5 1026 216 143 0 0 chr1 57867564 57867606 -139327826 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1026 437 90 15 0 chr1 57867605 57867672 -139327760 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1026 604 265 143 62 chr1 57867781 57867963 -139327469 - Tigger7 DNA MER2_type -4 2487 2307 5 1026 837 216 79 20 chr1 57867963 57868166 -139327266 - B3 SINE B2 0 216 2 5 1026 604 265 143 62 chr1 57868166 57868305 -139327127 - Tigger7 DNA MER2_type -185 2306 2140 5 1026 324 259 0 12 chr1 57869327 57869409 -139326023 - B1_Mur1 SINE Alu 0 149 69 5 1026 22 35 0 0 chr1 57871002 57871031 -139324401 + AT_rich Low_complexity Low_complexity 1 29 0 5 1026 2695 154 94 20 chr1 57871169 57871658 -139323774 - RLTR11A2 LTR ERVK -2 525 1 5 1026 1062 220 9 5 chr1 57875446 57875661 -139319771 - B3 SINE B2 0 216 1 5 1026 4514 125 33 33 chr1 57875703 57876512 -139318920 - RMER17D2 LTR ERVK 0 809 1 5 1026 435 19 0 0 chr1 57877815 57877867 -139317565 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1026 214 195 0 0 chr1 57877882 57877923 -139317509 + A-rich Low_complexity Low_complexity 1 41 0 5 1026 524 294 50 65 chr1 57880034 57880311 -139315121 + B4A SINE B4 2 274 -18 5 1026 243 0 0 0 chr1 57880379 57880406 -139315026 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1026 835 239 110 21 chr1 57883580 57883870 -139311562 + MER2 DNA MER2_type 20 335 -10 5 1026 459 0 0 0 chr1 57883893 57883944 -139311488 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1026 330 26 0 0 chr1 57883944 57883983 -139311449 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1026 207 0 0 0 chr1 57885208 57885231 -139310201 + (TGG)n Simple_repeat Simple_repeat 1 23 0 5 1026 450 0 0 0 chr1 57885231 57885281 -139310151 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1026 668 254 28 52 chr1 57886904 57887116 -139308316 + B4A SINE B4 5 211 -81 5 1026 3757 150 182 26 chr1 57887116 57887896 -139307536 - RMER19B LTR ERVK 0 902 1 5 1026 242 274 35 70 chr1 57891777 57891891 -139303541 - PB1D10 SINE Alu -7 110 1 5 1026 343 246 61 0 chr1 57892544 57892658 -139302774 - ID_B1 SINE B4 0 224 104 5 1026 699 270 59 52 chr1 57893212 57893501 -139301931 + L3 LINE CR1 1982 2272 -2217 5 1026 1423 271 65 30 chr1 57895657 57896091 -139299341 - Lx9 LINE L1 -458 7186 6738 5 1026 228 297 57 38 chr1 57897615 57897720 -139297712 + L2a LINE L2 3269 3426 0 5 1026 755 146 49 42 chr1 57900004 57900015 -139295417 - B1_Mur4 SINE Alu -4 146 139 5 1026 459 0 0 0 chr1 57900015 57900066 -139295366 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 5 1026 755 146 49 42 chr1 57900066 57900197 -139295235 - B1_Mur4 SINE Alu -12 138 3 5 1026 201 258 28 47 chr1 57901198 57901304 -139294128 - MIR SINE MIR -14 248 145 5 1026 319 315 87 57 chr1 57903142 57903371 -139292061 + MIR SINE MIR 21 256 -6 5 1026 25 0 0 0 chr1 57905877 57905902 -139289530 + AT_rich Low_complexity Low_complexity 1 25 0 5 1026 227 250 69 69 chr1 57906105 57906221 -139289211 - MER5A DNA MER1_type -73 116 1 5 1026 523 282 61 29 chr1 57906229 57906474 -139288958 - Charlie5 DNA MER1_type 0 2624 2372 5 1026 207 0 0 0 chr1 57906716 57906739 -139288693 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1026 1230 78 0 0 chr1 57908375 57908735 -139286697 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 1026 231 36 0 0 chr1 57909208 57909236 -139286196 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1026 768 149 113 44 chr1 57911392 57911595 -139283837 - ORR1D1 LTR MaLR 0 374 158 5 1026 855 174 0 0 chr1 57911595 57911773 -139283659 + GA-rich Low_complexity Low_complexity 1 178 0 5 1026 918 178 0 0 chr1 57911785 57912075 -139283357 + GA-rich Low_complexity Low_complexity 1 290 0 5 1026 831 209 52 11 chr1 57912075 57912249 -139283183 - ORR1D1 LTR MaLR -193 181 1 5 1026 332 338 12 65 chr1 57913826 57914073 -139281359 + Charlie4a DNA MER1_type 242 475 -33 5 1026 841 279 39 14 chr1 57915436 57915719 -139279713 + B4A SINE B4 3 292 0 5 1026 3403 45 0 0 chr1 57915977 57916373 -139279059 + MTA_Mm LTR MaLR 1 396 0 5 1026 192 351 0 0 chr1 57917799 57917856 -139277576 + MIRc SINE MIR 74 130 -138 5 1026 744 193 22 17 chr1 57919382 57919565 -139275867 - B3 SINE B2 -9 186 1 5 1026 306 318 95 25 chr1 57919986 57920144 -139275288 - LTR16B LTR ERVL -65 398 230 5 1026 853 318 26 0 chr1 57920460 57920693 -139274739 + B4 SINE B4 50 288 -4 5 1026 387 0 0 0 chr1 57920712 57920755 -139274677 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1026 339 293 202 22 chr1 57921277 57921617 -139273815 - L1MB1 LINE L1 -18 6171 5786 5 1026 485 71 14 0 chr1 57921738 57921808 -139273624 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 6 1026 448 189 20 31 chr1 57922589 57922687 -139272745 + U13 snRNA snRNA 12 108 0 6 1026 308 268 176 40 chr1 57922943 57923091 -139272341 + MLT1G LTR MaLR 142 309 -282 6 1026 808 292 9 0 chr1 57923257 57923469 -139271963 + ID_B1 SINE B4 2 215 -9 6 1026 254 29 29 0 chr1 57924767 57924802 -139270630 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1026 298 309 0 93 chr1 57924803 57924942 -139270490 + L3 LINE CR1 3614 3739 -750 6 1026 336 48 0 0 chr1 57925986 57926028 -139269404 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1026 336 191 0 0 chr1 57926114 57926177 -139269255 - B4 SINE B4 -30 262 200 6 1026 513 94 0 0 chr1 57926179 57926264 -139269168 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 1026 297 0 0 0 chr1 57926264 57926297 -139269135 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1026 504 256 151 23 chr1 57926302 57926474 -139268958 - B4A SINE B4 -98 194 1 6 1026 593 291 146 31 chr1 57929234 57929528 -139265904 + MER47A DNA MER2_type 2 329 -37 6 1026 801 253 109 16 chr1 57929572 57929829 -139265603 - B4A SINE B4 -3 289 9 6 1026 290 115 0 19 chr1 57929920 57929973 -139265459 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 6 1026 311 309 189 0 chr1 57930296 57930497 -139264935 - MIRb SINE MIR -15 253 15 6 1026 771 259 148 3 chr1 57931553 57931843 -139263589 + MER2 DNA MER2_type 8 339 -6 6 1026 803 250 173 4 chr1 57933189 57933438 -139261994 + B4A SINE B4 2 292 0 6 1026 213 178 0 0 chr1 57933454 57933499 -139261933 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1027 241 325 37 12 chr1 57934033 57934047 -139261385 - ID4 SINE ID 0 83 1 6 1027 294 313 0 0 chr1 57934047 57934114 -139261318 - ID SINE ID -157 67 1 6 1027 196 137 39 0 chr1 57934378 57934429 -139261003 + (CCCTAG)n Simple_repeat Simple_repeat 1 53 0 6 1027 1222 99 151 0 chr1 57934645 57934837 -139260595 - URR1A DNA MER1_type -4 222 2 6 1027 518 207 63 0 chr1 57936588 57936699 -139258733 + B1_Mur1 SINE Alu 17 134 -15 6 1027 287 226 96 82 chr1 57936589 57936724 -139258708 + MT2B LTR ERVL 182 318 -283 6 1027 259 240 25 62 chr1 57936674 57936754 -139258678 + PB1D9 SINE Alu 43 119 -1 6 1027 21 36 0 0 chr1 57938685 57938713 -139256719 + AT_rich Low_complexity Low_complexity 1 28 0 6 1027 279 0 0 0 chr1 57939789 57939820 -139255612 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 6 1027 789 197 0 0 chr1 57941029 57941161 -139254271 + RSINE1 SINE B4 13 144 -21 6 1027 2475 123 76 15 chr1 57941614 57942086 -139253346 - RMER15 LTR ERVL -15 560 60 6 1027 643 284 27 61 chr1 57943814 57944110 -139251322 - B4A SINE B4 -6 286 1 6 1027 293 227 26 25 chr1 57944242 57944329 -139251103 - MLT1A0 LTR MaLR -16 392 262 6 1027 30 0 0 0 chr1 57944553 57944583 -139250849 + AT_rich Low_complexity Low_complexity 1 30 0 6 1027 24 53 0 0 chr1 57946423 57946461 -139248971 + AT_rich Low_complexity Low_complexity 1 38 0 6 1027 299 320 100 6 chr1 57947769 57947959 -139247473 + MIR SINE MIR 33 233 -29 6 1027 231 150 0 0 chr1 57950686 57950726 -139244706 - Lx8 LINE L1 -2 7471 7432 6 1027 609 193 24 3 chr1 57950743 57950903 -139244529 - B3A SINE B2 -12 204 40 6 1027 608 266 260 8 chr1 57951019 57951368 -139244064 - Lx8 LINE L1 -132 7341 6905 6 1027 596 321 189 15 chr1 57952443 57952989 -139242443 + L1M5 LINE L1 2111 2751 -3395 6 1027 1555 183 124 15 chr1 57953007 57953346 -139242086 - RLTR14 LTR ERV1 0 382 7 6 1027 994 251 112 57 chr1 57953349 57953893 -139241539 + L1M5 LINE L1 4321 4894 -1252 6 1027 464 228 101 0 chr1 57954609 57954758 -139240674 - MER33 DNA MER1_type -1 323 160 6 1027 281 273 43 54 chr1 57954893 57954986 -139240446 - MER33 DNA MER1_type -216 108 17 6 1027 316 318 23 8 chr1 57957183 57957313 -139238119 - MIRc SINE MIR -128 140 9 6 1027 258 81 0 0 chr1 57959189 57959226 -139236206 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1027 609 267 32 86 chr1 57959561 57959782 -139235650 - MTE2b LTR MaLR -39 340 132 6 1027 23 33 0 0 chr1 57960036 57960066 -139235366 + AT_rich Low_complexity Low_complexity 1 30 0 6 1027 333 381 40 0 chr1 57960415 57960617 -139234815 - MLT1K LTR MaLR -326 269 60 6 1027 1039 301 32 6 chr1 57963500 57963844 -139231588 - ORR1E LTR MaLR -6 353 1 6 1027 228 111 0 0 chr1 57964945 57964981 -139230451 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 6 1027 258 243 40 79 chr1 57966203 57966306 -139229126 - Lx9 LINE L1 -1795 5849 5717 6 1027 28 0 0 0 chr1 57966316 57966344 -139229088 + AT_rich Low_complexity Low_complexity 1 28 0 6 1027 407 247 7 1 chr1 57966367 57966465 -139228967 + Lx7 LINE L1 5656 5757 -1224 6 1027 203 184 0 0 chr1 57967092 57967130 -139228302 + T-rich Low_complexity Low_complexity 2 39 0 6 1027 198 0 0 0 chr1 57969369 57969391 -139226041 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1027 582 288 83 69 chr1 57970042 57970318 -139225114 - Lx7 LINE L1 -329 7367 7088 6 1027 387 0 0 0 chr1 57970318 57970361 -139225071 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1027 288 0 0 0 chr1 57970361 57970392 -139225040 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1027 197 313 72 0 chr1 57971076 57971159 -139224273 - L2c LINE L2 -228 3159 3071 6 1027 195 204 0 0 chr1 57971721 57971770 -139223662 + T-rich Low_complexity Low_complexity 2 50 0 6 1027 779 21 10 0 chr1 57972696 57972793 -139222639 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 6 1027 244 326 33 0 chr1 57976509 57976601 -139218831 + L2a LINE L2 3332 3426 0 6 1027 513 0 0 0 chr1 57976610 57976667 -139218765 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1027 288 183 0 0 chr1 57978105 57978198 -139217234 + (TCTG)n Simple_repeat Simple_repeat 2 94 0 6 1027 403 264 111 40 chr1 57978516 57978741 -139216691 + L1MC5 LINE L1 7301 7541 -420 6 1027 893 100 35 46 chr1 57978905 57979252 -139216180 + (TAGA)n Simple_repeat Simple_repeat 1 343 0 6 1027 782 110 19 6 chr1 57979269 57979425 -139216007 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 6 1027 192 111 0 0 chr1 57979427 57979463 -139215969 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 6 1027 342 0 0 0 chr1 57980106 57980144 -139215288 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1027 832 284 46 13 chr1 57980673 57980912 -139214520 - B4A SINE B4 -4 288 42 6 1027 2209 144 5 24 chr1 57980941 57981317 -139214115 + Lx4A LINE L1 6690 7058 0 6 1027 26 0 0 0 chr1 57981317 57981343 -139214089 + AT_rich Low_complexity Low_complexity 1 26 0 6 1027 736 250 130 0 chr1 57981553 57981745 -139213687 + ID_B1 SINE B4 6 222 -2 6 1027 396 0 0 0 chr1 57981826 57981870 -139213562 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1027 595 200 0 55 chr1 57982164 57982291 -139213141 + PB1D9 SINE Alu 1 120 0 6 1027 409 279 92 8 chr1 57983263 57983393 -139212039 + RSINE1 SINE B4 25 165 0 6 1027 769 221 37 46 chr1 57983516 57983734 -139211698 + B4A SINE B4 77 292 0 6 1027 495 301 31 39 chr1 57984253 57984512 -139210920 - RLTR11A2 LTR ERVK -270 257 1 6 1027 280 208 37 0 chr1 57984914 57984981 -139210451 - B1_Mur1 SINE Alu -11 138 61 6 1027 2923 127 35 73 chr1 57985311 57985731 -139209701 - RLTR28 LTR ERVL 0 524 106 6 1027 1092 89 7 7 chr1 57985731 57985878 -139209554 + B1_Mm SINE Alu 1 147 0 6 1027 2923 127 35 73 chr1 57985878 57986002 -139209430 - RLTR28 LTR ERVL -419 105 1 6 1027 1637 174 40 43 chr1 57986086 57986218 -139209214 - RLTR14 LTR ERV1 -33 349 220 6 1027 2714 59 6 0 chr1 57986218 57986575 -139208857 + Lx3_Mus LINE L1 6651 7009 0 6 1027 1637 174 40 43 chr1 57986575 57986790 -139208642 - RLTR14 LTR ERV1 -163 219 4 6 1027 18102 147 43 52 chr1 57986810 57989510 -139205922 - RLTR14-int LTR ERV1 0 5317 2559 6 1027 748 87 403 7 chr1 57989510 57989649 -139205783 - B2_Mm2 SINE B2 -1 194 1 6 1027 18102 147 43 52 chr1 57989649 57990335 -139205097 - RLTR14-int LTR ERV1 -2759 2558 1961 6 1027 1543 193 13 16 chr1 57990335 57990686 -139204746 - MT2A LTR ERVL -125 476 1 6 1027 251 287 115 0 chr1 57990964 57991086 -139204346 + Charlie16a DNA MER1_type 106 241 -101 6 1027 252 86 0 0 chr1 57991888 57991923 -139203509 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1027 297 0 0 0 chr1 57992125 57992158 -139203274 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1027 553 328 49 0 chr1 57992601 57992805 -139202627 - ID_B1 SINE B4 -7 217 4 6 1027 271 221 118 0 chr1 57993647 57993741 -139201691 + PB1D7 SINE Alu 10 113 -7 6 1027 302 239 2 0 chr1 57994362 57994428 -139201004 - ID4 SINE ID -74 78 12 6 1027 253 264 120 92 chr1 57996273 57996415 -139199017 + MIRb SINE MIR 29 174 -102 6 1027 202 312 61 24 chr1 57997419 57997501 -139197931 - MIRc SINE MIR -138 130 46 6 1027 343 365 75 35 chr1 58001102 58001301 -139194131 + MER115 DNA Tip100 91 297 -396 1 1027 306 50 0 0 chr1 58002296 58002336 -139193096 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 2 1027 453 36 0 0 chr1 58002349 58002404 -139193028 + (TTTC)n Simple_repeat Simple_repeat 4 58 0 3 1027 236 185 19 0 chr1 58002405 58002459 -139192973 + CT-rich Low_complexity Low_complexity 1 55 0 4 1027 898 175 9 0 chr1 58002475 58002704 -139192728 + CT-rich Low_complexity Low_complexity 1 230 0 4 1027 21 57 0 0 chr1 58003737 58003772 -139191660 + AT_rich Low_complexity Low_complexity 1 35 0 5 1027 800 291 51 18 chr1 58005339 58005615 -139189817 - B4 SINE B4 -6 286 2 6 1027 26 0 0 0 chr1 58007069 58007095 -139188337 + AT_rich Low_complexity Low_complexity 1 26 0 7 1027 397 331 23 0 chr1 58007157 58007290 -139188142 - MTEa-int LTR MaLR -1444 136 1 8 1027 439 214 180 48 chr1 58007290 58007457 -139187975 - MTEa LTR MaLR 0 379 191 8 1027 623 178 15 52 chr1 58007530 58007666 -139187766 + ID_B1 SINE B4 87 217 -7 9 1027 251 175 0 0 chr1 58008280 58008320 -139187112 + MLT1A1 LTR MaLR 300 339 -69 1 1027 233 254 15 45 chr1 58010452 58010518 -139184914 - RMER21B LTR ERV1 -124 718 655 1 1027 595 257 144 5 chr1 58010543 58010731 -139184701 - RMER21B LTR ERV1 -282 560 347 1 1027 1061 44 80 0 chr1 58011049 58011186 -139184246 + B1_Mus1 SINE Alu 1 148 0 1 1027 336 238 101 37 chr1 58011433 58011542 -139183890 - RSINE1 SINE B4 -39 126 11 1 1027 393 295 86 91 chr1 58014706 58014926 -139180506 - MER20 DNA MER1_type 0 219 1 1 1027 1414 88 0 15 chr1 58015028 58015225 -139180207 + B2_Mm2 SINE B2 2 195 0 1 1027 204 218 0 0 chr1 58015461 58015516 -139179916 + A-rich Low_complexity Low_complexity 1 55 0 1 1027 414 293 108 25 chr1 58016304 58016507 -139178925 + MIR SINE MIR 1 220 -42 1 1027 643 225 48 35 chr1 58016673 58016882 -139178550 + B3A SINE B2 9 215 -1 1 1027 665 256 149 24 chr1 58016961 58017249 -139178183 + L1MB5 LINE L1 5851 6174 0 1 1027 186 133 0 0 chr1 58017832 58017862 -139177570 + (CATG)n Simple_repeat Simple_repeat 4 33 0 2 1027 728 224 18 24 chr1 58018034 58018199 -139177233 - RSINE1 SINE B4 0 165 2 2 1027 546 235 0 29 chr1 58018539 58018679 -139176753 + B1F SINE Alu 7 142 -7 2 1027 486 244 34 17 chr1 58019083 58019200 -139176232 + PB1D9 SINE Alu 1 119 -1 2 1027 29 0 0 0 chr1 58020297 58020326 -139175106 + AT_rich Low_complexity Low_complexity 1 29 0 2 1027 200 343 89 20 chr1 58020604 58020705 -139174727 - L2b LINE L2 -29 3346 3239 2 1027 822 197 0 20 chr1 58021769 58021919 -139173513 + B1_Mur1 SINE Alu 1 147 -2 2 1027 296 291 47 0 chr1 58022677 58022763 -139172669 + MER91A DNA Tip100 7 96 -100 2 1027 249 275 26 60 chr1 58023169 58023285 -139172147 + PB1D7 SINE Alu 6 117 -3 2 1027 213 39 0 0 chr1 58023454 58023480 -139171952 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 2 1027 209 382 71 13 chr1 58024897 58025051 -139170381 + MIRb SINE MIR 70 232 -36 3 1027 668 250 73 20 chr1 58025230 58025434 -139169998 + B3 SINE B2 2 216 0 3 1027 23 0 0 0 chr1 58026026 58026049 -139169383 + AT_rich Low_complexity Low_complexity 1 23 0 3 1027 203 216 0 0 chr1 58026096 58026133 -139169299 - MIRb SINE MIR -13 255 219 3 1027 386 255 19 19 chr1 58027706 58027814 -139167618 - MTEb LTR MaLR -13 366 259 3 1027 277 333 30 0 chr1 58027817 58027916 -139167516 - MTEb LTR MaLR -227 152 51 3 1027 391 247 79 64 chr1 58027969 58028172 -139167260 - MER58B DNA MER1_type -84 257 52 3 1027 244 250 171 0 chr1 58028528 58028616 -139166816 - PB1D10 SINE Alu -5 115 13 3 1027 299 113 0 19 chr1 58028831 58028885 -139166547 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 3 1027 189 0 0 0 chr1 58028883 58028904 -139166528 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3 1027 1032 104 14 7 chr1 58028913 58029058 -139166374 - B1_Mm SINE Alu 0 147 2 3 1027 496 273 83 29 chr1 58029135 58029339 -139166093 - LTR16B2 LTR ERVL -4 458 244 4 1027 266 386 23 8 chr1 58029344 58029472 -139165960 + B1F SINE Alu 1 130 -19 4 1027 330 312 48 64 chr1 58029502 58029690 -139165742 - LTR16B2 LTR ERVL -277 185 1 4 1027 310 229 66 79 chr1 58029795 58029947 -139165485 + RLTR25A LTR ERVK 433 582 -521 4 1027 544 204 0 9 chr1 58029842 58029951 -139165481 + B1_Mus2 SINE Alu 9 116 -31 4 1027 340 210 168 8 chr1 58029998 58030123 -139165309 - L2 LINE L2 -989 2430 2286 4 1027 239 254 0 0 chr1 58030525 58030580 -139164852 + GA-rich Low_complexity Low_complexity 2 56 0 4 1027 14510 11 8 0 chr1 58030822 58032445 -139162987 + L1Md_A LINE L1 3951 5586 -297 4 1027 8967 14 1 0 chr1 58032445 58033440 -139161992 + L1Md_A LINE L1 5587 6582 0 4 1027 265 232 0 0 chr1 58033898 58033954 -139161478 - PB1D9 SINE Alu -41 79 24 4 1027 228 162 105 139 chr1 58033954 58033975 -139161457 - MT2B LTR ERVL -357 222 162 4 1027 756 238 49 52 chr1 58034842 58035166 -139160266 - RLTR15 LTR ERVK -36 323 1 4 1027 237 317 99 0 chr1 58035173 58035274 -139160158 + MIR SINE MIR 36 146 -116 5 1027 2604 180 167 24 chr1 58035288 58035807 -139159625 + L1_Mur3 LINE L1 307 908 -6820 5 1027 2904 43 3 0 chr1 58035807 58036152 -139159280 - ORR1A1 LTR MaLR 0 346 1 5 1027 14082 57 7 2 chr1 58036152 58037934 -139157498 - ORR1A1-int LTR MaLR 0 1792 2 5 1027 2964 46 0 0 chr1 58037935 58038281 -139157151 - ORR1A1 LTR MaLR 0 346 1 5 1027 3911 188 63 55 chr1 58038281 58039012 -139156420 + L1_Mur3 LINE L1 909 1675 -4202 5 1027 1186 68 0 0 chr1 58039012 58039159 -139156273 + B1_Mus2 SINE Alu 1 147 0 5 1027 3911 210 43 92 chr1 58039159 58039615 -139155817 + L1_Mur3 LINE L1 1676 2049 -3828 5 1027 393 22 0 0 chr1 58039615 58039661 -139155771 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1027 3911 210 43 92 chr1 58039661 58039984 -139155448 + L1_Mur3 LINE L1 2050 2364 -3513 5 1027 2681 98 5 13 chr1 58039971 58040344 -139155088 + L1_Mur3 LINE L1 5340 5709 -171 5 1027 533 226 8 8 chr1 58040358 58040492 -139154940 + Lx6 LINE L1 7323 7456 -4 5 1027 191 339 73 0 chr1 58040494 58040603 -139154829 + MIR SINE MIR 136 252 -10 5 1027 1448 267 33 0 chr1 58041033 58041400 -139154032 + MTEa LTR MaLR 1 379 0 5 1027 485 250 268 0 chr1 58041409 58041573 -139153859 + MTEa-int LTR MaLR 11 218 -1362 5 1027 1244 247 104 66 chr1 58041580 58041632 -139153800 + MTEa-int LTR MaLR 1023 1060 -520 5 1027 2348 149 78 21 chr1 58041632 58041721 -139153711 - RLTR44B LTR ERVK 0 449 362 5 1027 1178 48 0 20 chr1 58041721 58041870 -139153562 - B1_Mus2 SINE Alu 0 147 2 5 1027 2348 149 78 21 chr1 58041870 58042205 -139153227 - RLTR44B LTR ERVK -88 361 1 5 1027 1244 247 104 66 chr1 58042205 58042624 -139152808 + MTEa-int LTR MaLR 1061 1512 -68 5 1027 2461 202 94 13 chr1 58042635 58043374 -139152058 - ORR1B1-int LTR MaLR -670 839 1 6 1027 1375 157 156 28 chr1 58043378 58043699 -139151733 - ORR1B1 LTR MaLR -8 386 25 6 1027 284 235 62 0 chr1 58043759 58043840 -139151592 + MTEa LTR MaLR 5 90 -289 6 1027 802 282 86 0 chr1 58044285 58044540 -139150892 + MTEa LTR MaLR 91 367 -12 6 1027 287 242 0 29 chr1 58045092 58045160 -139150272 - U4 snRNA snRNA -79 66 1 6 1027 247 245 118 0 chr1 58045606 58045708 -139149724 - MTEa LTR MaLR 0 379 266 6 1027 1967 189 105 98 chr1 58046211 58046637 -139148795 - RMER15 LTR ERVL 0 575 142 6 1027 254 0 42 42 chr1 58046637 58046685 -139148747 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1027 1967 189 105 98 chr1 58046685 58046827 -139148605 - RMER15 LTR ERVL -434 141 3 6 1027 404 227 299 7 chr1 58046901 58047048 -139148384 - MTEa LTR MaLR -189 190 1 6 1027 1408 123 32 9 chr1 58047847 58048068 -139147364 - URR1A DNA MER1_type 0 226 1 6 1027 1124 52 0 7 chr1 58048405 58048541 -139146891 + B1_Mus1 SINE Alu 1 135 -13 6 1027 321 26 0 0 chr1 58048541 58048579 -139146853 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 6 1027 187 361 60 0 chr1 58049256 58049339 -139146093 - MIRc SINE MIR -119 149 62 6 1027 335 169 70 0 chr1 58049364 58049435 -139145997 + U6 snRNA snRNA 1 76 -31 7 1027 456 273 39 8 chr1 58049467 58049596 -139145836 + B1F SINE Alu 9 141 -8 7 1027 188 333 0 0 chr1 58049802 58049868 -139145564 + MIRb SINE MIR 40 105 -163 7 1027 428 262 164 4 chr1 58049979 58050234 -139145198 - L1_Mur3 LINE L1 -257 5623 5347 7 1027 6115 140 46 85 chr1 58050246 58050692 -139144740 + Lx LINE L1 4706 5122 -761 7 1027 1055 88 0 51 chr1 58050692 58050848 -139144584 + B1_Mus1 SINE Alu 1 148 0 7 1027 6115 110 46 52 chr1 58050848 58051835 -139143597 + Lx LINE L1 5123 6095 -559 7 1027 925 201 47 70 chr1 58051855 58052069 -139143363 - B3 SINE B2 -3 213 5 7 1027 921 88 0 134 chr1 58052083 58052254 -139143178 - B1_Mus1 SINE Alu 0 148 1 7 1027 1238 167 47 39 chr1 58053305 58053561 -139141871 - L1_Mur3 LINE L1 -6932 780 523 7 1027 275 108 0 0 chr1 58053562 58053599 -139141833 - L1_Mur3 LINE L1 -7628 84 48 7 1027 231 88 0 0 chr1 58055878 58055912 -139139520 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 7 1027 276 254 0 0 chr1 58056041 58056096 -139139336 - MurSatRep1 Unknown Unknown -1859 278 224 8 1027 207 0 0 0 chr1 58057027 58057050 -139138382 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1027 1265 61 0 0 chr1 58057050 58057197 -139138235 - B1_Mus2 SINE Alu 0 147 1 8 1027 505 307 21 0 chr1 58057799 58057939 -139137493 + B1F SINE Alu 1 143 -6 8 1027 24 67 0 0 chr1 58058280 58058325 -139137107 + AT_rich Low_complexity Low_complexity 1 45 0 8 1027 22 56 0 0 chr1 58058408 58058444 -139136988 + AT_rich Low_complexity Low_complexity 1 36 0 8 1027 188 301 70 70 chr1 58058763 58058906 -139136526 + L2 LINE L2 1717 1859 -1560 8 1027 482 310 87 9 chr1 58059047 58059265 -139136167 + L2 LINE L2 2121 2355 -1064 8 1027 266 224 23 23 chr1 58059301 58059388 -139136044 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 8 1027 267 254 111 0 chr1 58059543 58059606 -139135826 + ID4_ SINE ID 3 72 -11 8 1027 502 183 31 108 chr1 58060979 58061108 -139134324 + PB1D7 SINE Alu 1 119 -1 8 1027 328 221 224 20 chr1 58061344 58061496 -139133936 - L1ME3A LINE L1 -199 5974 5792 9 1027 334 247 0 0 chr1 58061683 58061760 -139133672 - L1ME3A LINE L1 -718 5455 5379 9 1027 183 156 0 0 chr1 58061881 58061913 -139133519 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1027 2458 201 47 22 chr1 58062002 58062496 -139132936 - RLTR19C LTR ERVK 0 506 1 9 1027 933 109 0 0 chr1 58062527 58062655 -139132777 + B2_Mm2 SINE B2 2 129 -66 9 1027 1399 146 78 169 chr1 58063002 58063240 -139132192 - ORR1A1 LTR MaLR -8 338 150 9 1027 1318 41 0 0 chr1 58063240 58063387 -139132045 - B1_Mm SINE Alu 0 147 1 9 1027 1399 146 78 169 chr1 58063387 58063520 -139131912 - ORR1A1 LTR MaLR -197 149 1 9 1027 357 294 137 78 chr1 58063520 58063804 -139131628 - L1ME3A LINE L1 -1183 4963 4663 9 1027 2825 135 65 2 chr1 58063928 58064360 -139131072 + RMER6B LTR ERVK 3 461 0 9 1027 22 0 0 0 chr1 58064475 58064497 -139130935 + AT_rich Low_complexity Low_complexity 1 22 0 9 1027 318 309 41 0 chr1 58064560 58064657 -139130775 - PB1D10 SINE Alu 0 117 17 9 128 8185 74 6 5 chr1 58064691 58066011 -139129421 - L1_Mus4 LINE L1 0 6636 5314 9 1028 8517 61 27 37 chr1 58066010 58067014 -139128418 - L1VL4 LINE L1 -1469 2090 1097 1 1028 1055 89 82 0 chr1 58067014 58067149 -139128283 - B1_Mus2 SINE Alu -1 146 1 1 1028 8517 115 21 10 chr1 58067149 58068202 -139127230 - L1VL4 LINE L1 -2463 1096 29 1 1028 382 277 75 18 chr1 58068282 58068477 -139126955 - L1ME3A LINE L1 -1877 4269 4065 9 1028 540 0 0 0 chr1 58068686 58068746 -139126686 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1028 390 57 0 0 chr1 58068746 58068799 -139126633 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1028 1215 117 11 37 chr1 58068800 58068987 -139126445 - B2_Mm1t SINE B2 -10 183 2 1 1028 672 285 25 6 chr1 58069038 58069197 -139126235 - RSINE1 SINE B4 -1 164 3 1 1028 265 224 102 23 chr1 58069197 58069325 -139126107 - L1ME3A LINE L1 -2618 3528 3391 9 1028 230 210 36 0 chr1 58069350 58069411 -139126021 + PB1D10 SINE Alu 58 120 0 1 1028 25 31 0 0 chr1 58069518 58069550 -139125882 + AT_rich Low_complexity Low_complexity 1 32 0 1 1028 409 298 39 39 chr1 58069568 58069697 -139125735 - RSINE1 SINE B4 -26 139 11 1 1028 386 306 154 38 chr1 58069746 58069969 -139125463 - L1M5 LINE L1 -2416 3730 3474 1 1028 727 243 59 84 chr1 58069969 58070171 -139125261 - B3A SINE B2 -1 197 1 1 1028 386 306 154 38 chr1 58070171 58070317 -139125115 - L1M5 LINE L1 -2673 3473 3319 1 1028 180 77 0 0 chr1 58070370 58070396 -139125036 + (ATG)n Simple_repeat Simple_repeat 2 27 0 1 1028 1533 66 40 0 chr1 58070614 58070840 -139124592 - L1_Mus2 LINE L1 0 6566 6361 1 1028 1369 198 56 107 chr1 58071177 58071568 -139123864 + MTE2a LTR MaLR 1 371 -8 1 1028 26 50 0 0 chr1 58075359 58075399 -139120033 + AT_rich Low_complexity Low_complexity 1 40 0 1 1028 2002 186 84 3 chr1 58075879 58076261 -139119171 + MTC LTR MaLR 1 413 -8 1 1028 711 225 152 0 chr1 58077125 58077316 -139118116 + B4A SINE B4 1 220 -72 1 1028 216 0 0 0 chr1 58077342 58077366 -139118066 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1028 813 290 93 56 chr1 58077590 58078076 -139117356 - L1MC4a LINE L1 -219 7663 7160 1 1028 723 276 91 12 chr1 58078153 58078406 -139117026 - L1MC4a LINE L1 -882 7000 6728 1 1028 563 303 180 60 chr1 58078415 58078731 -139116701 - MLT1E1 LTR MaLR -1 653 300 1 1028 240 341 33 0 chr1 58078930 58079021 -139116411 + RMER12 LTR ERVK 743 836 -486 1 1028 2946 154 86 57 chr1 58079037 58079595 -139115837 - RMER15 LTR ERVL 0 575 2 1 1028 777 217 137 36 chr1 58079598 58079875 -139115557 - L1MC4a LINE L1 -1228 6654 6350 1 1028 242 240 53 0 chr1 58080219 58080294 -139115138 - L1M5 LINE L1 -3715 2500 2422 1 1028 26 50 0 0 chr1 58082697 58082737 -139112695 + AT_rich Low_complexity Low_complexity 1 40 0 1 1028 252 86 0 0 chr1 58082738 58082773 -139112659 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1028 1109 89 0 13 chr1 58082774 58082933 -139112499 - B2_Mm2 SINE B2 -37 158 2 1 1028 549 110 0 0 chr1 58083484 58083566 -139111866 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1028 1161 65 22 0 chr1 58083569 58083707 -139111725 - B1_Mus1 SINE Alu -6 142 2 1 1028 237 128 0 0 chr1 58083723 58083770 -139111662 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1028 738 112 0 0 chr1 58083771 58083878 -139111554 - B1_Mus2 SINE Alu 0 147 41 1 1028 306 231 10 62 chr1 58083793 58083890 -139111542 - RLTR25B LTR ERVK -507 521 430 1 1028 318 191 216 31 chr1 58084037 58084134 -139111298 - ORR1E LTR MaLR -225 134 20 1 1028 234 132 53 70 chr1 58085294 58085351 -139110081 - B3 SINE B2 -8 208 153 1 1028 306 194 0 0 chr1 58085378 58085450 -139109982 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1028 420 271 199 14 chr1 58085459 58085605 -139109827 - B3A SINE B2 -17 181 9 1 1028 255 303 44 11 chr1 58085684 58085774 -139109658 - MLT1A1 LTR MaLR -2 406 314 1 1028 358 278 130 61 chr1 58085846 58085961 -139109471 + B1_Mur1 SINE Alu 4 126 -23 1 1028 537 16 0 0 chr1 58085966 58086028 -139109404 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1028 819 141 0 23 chr1 58086185 58086316 -139109116 + B1_Mur3 SINE Alu 7 134 -15 1 1028 349 303 10 0 chr1 58088444 58088543 -139106889 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1028 228 338 54 0 chr1 58088543 58088617 -139106815 - L2a LINE L2 -331 3095 3018 1 1028 238 155 34 17 chr1 58088985 58089044 -139106388 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 1 1028 2450 172 116 32 chr1 58089084 58089612 -139105820 - Lx4A LINE L1 -109 6949 6378 1 1028 2904 127 26 28 chr1 58090474 58090880 -139104552 - RMER6B LTR ERVK 0 461 56 1 1028 279 0 0 0 chr1 58090880 58090911 -139104521 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1028 2904 127 26 28 chr1 58090911 58090966 -139104466 - RMER6B LTR ERVK -406 55 1 1 1028 3743 144 75 27 chr1 58090970 58091667 -139103765 - MYSERV6-int LTR ERVK -1197 7762 7033 1 1028 616 182 0 0 chr1 58091667 58091766 -139103666 - RLTR33 LTR ERVK 0 678 580 1 1028 3226 143 128 2 chr1 58091768 58092348 -139103084 - RLTR33 LTR ERVK -38 640 1 1 1028 8150 128 72 73 chr1 58092463 58092502 -139102930 - MYSERV6-int LTR ERVK -1927 7032 6998 1 1028 3173 136 31 10 chr1 58092502 58092991 -139102441 - RLTR19 LTR ERVK 0 499 1 1 1028 8150 128 72 73 chr1 58092991 58093633 -139101799 - MYSERV6-int LTR ERVK -1962 6997 6319 1 1028 301 197 0 34 chr1 58093633 58093707 -139101725 - B1F SINE Alu -78 71 6 1 1028 8150 128 72 73 chr1 58093707 58094058 -139101374 - MYSERV6-int LTR ERVK -1962 6318 5946 1 1028 2593 107 106 3 chr1 58094058 58094425 -139101007 - RLTR44A LTR ERVK 0 405 1 1 1028 8150 128 72 73 chr1 58094425 58094884 -139100548 - MYSERV6-int LTR ERVK -3014 5945 5467 1 1028 10102 131 12 16 chr1 58094911 58095234 -139100198 - MYSERV6-int LTR ERVK -6829 2130 1810 1 1028 1451 87 11 0 chr1 58095234 58095419 -139100013 + B2_Mm1t SINE B2 1 187 -6 1 1028 10102 131 12 16 chr1 58095419 58096646 -139098786 - MYSERV6-int LTR ERVK -7150 1809 586 1 1028 695 108 63 0 chr1 58096698 58096809 -139098623 + MYSERV6-int LTR ERVK 335 452 -8507 1 1028 2260 154 106 10 chr1 58096806 58097220 -139098212 - MYSERV6-int LTR ERVK -8374 585 132 1 1028 321 143 0 31 chr1 58097634 58097699 -139097733 - B3 SINE B2 -3 213 151 1 1028 259 333 17 6 chr1 58098355 58098533 -139096899 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1028 448 298 0 17 chr1 58098641 58098822 -139096610 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1028 308 177 0 16 chr1 58098888 58098951 -139096481 - RMER13A LTR ERVK -714 146 85 1 1028 1989 246 122 52 chr1 58098980 58099619 -139095813 + RMER13A LTR ERVK 165 848 -12 1 1028 318 315 11 6 chr1 58099635 58099814 -139095618 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1028 234 81 0 0 chr1 58099814 58099851 -139095581 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1028 216 357 0 89 chr1 58100532 58100655 -139094777 - L2a LINE L2 0 3426 3315 1 1028 206 317 77 29 chr1 58100762 58100866 -139094566 + L2b LINE L2 2757 2865 -554 1 1028 431 232 195 0 chr1 58101626 58101790 -139093642 - Lx8 LINE L1 -1 7472 7277 1 1028 1738 174 36 62 chr1 58101793 58102258 -139093174 - RMER17C LTR ERVK -517 441 16 1 1028 272 125 107 0 chr1 58102267 58102323 -139093109 - Lx8 LINE L1 -225 7248 7187 1 1028 254 316 126 77 chr1 58102504 58102892 -139092540 + L2b LINE L2 2934 3340 -35 1 1028 24 0 0 0 chr1 58103100 58103124 -139092308 + AT_rich Low_complexity Low_complexity 1 24 0 1 1028 251 334 67 67 chr1 58103154 58103481 -139091951 - L1M5 LINE L1 -444 5680 5354 1 1028 264 316 98 39 chr1 58103739 58103841 -139091591 + MIR SINE MIR 43 150 -58 1 1028 339 180 26 26 chr1 58105067 58105181 -139090251 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1028 184 282 108 96 chr1 58105249 58105362 -139090070 - MER5B DNA MER1_type 0 178 64 1 1028 4138 119 29 17 chr1 58105362 58105951 -139089481 - MT2B LTR ERVL -3 598 3 1 1028 184 282 108 96 chr1 58105951 58105994 -139089438 - MER5B DNA MER1_type -115 63 20 1 1028 323 350 93 0 chr1 58106358 58106498 -139088934 - MIR SINE MIR -1 261 109 1 1028 206 207 0 49 chr1 58107536 58107597 -139087835 + CT-rich Low_complexity Low_complexity 4 61 0 1 1028 671 320 120 19 chr1 58107982 58108174 -139087258 + B4A SINE B4 1 200 -92 1 1028 4245 117 3 0 chr1 58108174 58108766 -139086666 + Lx2A LINE L1 6408 7001 -7 1 1028 671 320 120 19 chr1 58108766 58108831 -139086601 + B4A SINE B4 201 283 -9 1 1028 784 269 57 54 chr1 58109166 58109186 -139086246 + L1MB1 LINE L1 5820 5839 -350 1 1028 2212 127 52 160 chr1 58109186 58109666 -139085766 + RLTR23 LTR ERV1 1 428 -2 1 1028 784 269 57 54 chr1 58109666 58109960 -139085472 + L1MB1 LINE L1 5840 6135 -54 1 1028 333 0 0 0 chr1 58111442 58111479 -139083953 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1028 432 321 98 4 chr1 58111742 58112017 -139083415 + L1MA6 LINE L1 6000 6300 0 1 1028 1191 296 61 23 chr1 58112467 58112858 -139082574 + Tigger7 DNA MER2_type 1 406 -2085 1 1028 1398 264 147 44 chr1 58113186 58113780 -139081652 + Lx8 LINE L1 6819 7473 0 1 1028 237 299 20 10 chr1 58115650 58115748 -139079684 + (CACCAT)n Simple_repeat Simple_repeat 3 101 0 1 1028 239 232 0 18 chr1 58115662 58115719 -139079713 + (CCA)n Simple_repeat Simple_repeat 2 57 0 1 1028 378 0 0 0 chr1 58117075 58117117 -139078315 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1028 254 0 42 42 chr1 58117597 58117645 -139077787 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 1 1028 1134 45 0 0 chr1 58117645 58117778 -139077654 - B1_Mm SINE Alu -12 135 3 1 1028 228 143 0 0 chr1 58117896 58117938 -139077494 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1028 270 0 0 0 chr1 58118333 58118363 -139077069 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 1028 560 227 148 25 chr1 58118658 58118861 -139076571 - MLT1B LTR MaLR -88 302 75 1 1028 225 342 0 0 chr1 58119347 58119426 -139076006 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1028 1294 131 92 0 chr1 58119592 58119798 -139075634 - URR1B DNA MER1_type 0 225 1 1 1028 247 355 82 0 chr1 58119805 58119988 -139075444 + MIR SINE MIR 36 233 -29 1 1028 180 111 0 0 chr1 58122214 58122241 -139073191 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 1 1028 450 0 0 0 chr1 58123419 58123469 -139071963 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1028 359 170 5 76 chr1 58124425 58124610 -139070822 + G-rich Low_complexity Low_complexity 2 173 0 1 1028 182 109 0 83 chr1 58124624 58124684 -139070748 + G-rich Low_complexity Low_complexity 1 55 0 1 1028 891 274 5 9 chr1 58125799 58126016 -139069416 + ID_B1 SINE B4 2 217 -7 1 1028 214 276 56 22 chr1 58129010 58129099 -139066333 - MIR SINE MIR -30 232 141 1 1028 286 289 119 82 chr1 58130310 58130653 -139064779 - L1MDa LINE L1 -4704 1929 1574 1 1028 276 149 0 0 chr1 58130733 58130780 -139064652 + (CCA)n Simple_repeat Simple_repeat 1 47 0 1 1028 892 144 43 0 chr1 58130786 58130925 -139064507 - B1_Mus2 SINE Alu 0 147 3 1 1028 671 279 102 35 chr1 58130953 58131314 -139064118 - L1MDa LINE L1 -5279 1354 931 1 1028 522 218 131 39 chr1 58131370 58131523 -139063909 - L1MDa LINE L1 -6158 475 309 1 1028 707 112 0 8 chr1 58131794 58131911 -139063521 + (GGAA)n Simple_repeat Simple_repeat 4 119 0 1 1028 223 180 0 20 chr1 58132130 58132181 -139063251 + GA-rich Low_complexity Low_complexity 1 50 0 2 1028 276 288 0 0 chr1 58134653 58134661 -139060771 + (TAGA)n Simple_repeat Simple_repeat 4 11 0 2 1028 888 158 0 20 chr1 58134661 58134810 -139060622 + B1_Mus1 SINE Alu 2 147 -1 2 1028 276 288 0 0 chr1 58134810 58134874 -139060558 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2 1028 1817 164 100 5 chr1 58135464 58135844 -139059588 - MTC LTR MaLR 0 421 6 2 1028 239 303 104 49 chr1 58136235 58136398 -139059034 - MLT1J1 LTR MaLR -16 432 261 2 1028 368 335 69 0 chr1 58136411 58136584 -139058848 - MER3 DNA MER1_type -16 193 9 2 1028 275 256 162 2 chr1 58136594 58136772 -139058660 - MLT1J1 LTR MaLR -189 259 49 2 1028 557 252 76 27 chr1 58136937 58137161 -139058271 - RLTR12B LTR ERVK -43 485 251 2 1028 664 220 128 77 chr1 58137172 58137465 -139057967 - RLTR12B LTR ERVK -200 327 47 2 1028 23 0 0 0 chr1 58137976 58137999 -139057433 + AT_rich Low_complexity Low_complexity 1 23 0 2 1028 624 244 99 0 chr1 58138036 58138208 -139057224 - MTE2b LTR MaLR -190 189 1 2 1028 5923 57 1 7 chr1 58139183 58139923 -139055509 + L1Md_T LINE L1 5847 6582 0 2 1028 218 29 59 0 chr1 58140007 58140041 -139055391 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1028 677 222 200 23 chr1 58140079 58140254 -139055178 + B3 SINE B2 5 210 -6 2 1028 243 0 0 0 chr1 58140276 58140303 -139055129 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1028 417 305 68 16 chr1 58141490 58141680 -139053752 + Lx8 LINE L1 7095 7294 -179 2 1028 287 314 6 25 chr1 58143171 58143334 -139052098 + (CATA)n Simple_repeat Simple_repeat 3 162 0 2 1028 430 324 0 6 chr1 58143258 58143435 -139051997 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1028 12053 16 0 0 chr1 58144177 58145546 -139049886 - L1_Mm LINE L1 -1112 4771 3403 2 1028 416 324 14 0 chr1 58145639 58145781 -139049651 + B3A SINE B2 8 151 -47 2 1028 321 174 0 0 chr1 58145781 58145850 -139049582 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1028 242 311 63 15 chr1 58145941 58146104 -139049328 - MIRb SINE MIR -57 211 33 2 1028 544 295 164 14 chr1 58148216 58148436 -139046996 - MTE2b LTR MaLR -109 270 18 2 1028 762 125 109 167 chr1 58148651 58148872 -139046560 + URR1A DNA MER1_type 17 224 -2 2 1028 493 204 48 0 chr1 58150004 58150107 -139045325 + PB1D10 SINE Alu 3 110 -7 2 1028 241 302 0 40 chr1 58150269 58150369 -139045063 - L1M5 LINE L1 -599 5641 5546 2 1028 861 44 0 0 chr1 58152130 58152244 -139043188 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 1028 1024 218 0 28 chr1 58152473 58152690 -139042742 + B3 SINE B2 1 211 -5 2 1028 450 0 0 0 chr1 58154186 58154236 -139041196 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1028 234 0 0 0 chr1 58155916 58155942 -139039490 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1028 2493 83 3 0 chr1 58156583 58156907 -139038525 - ORR1A2 LTR MaLR 0 327 3 2 1028 278 26 26 0 chr1 58157509 58157548 -139037884 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1028 1110 66 0 0 chr1 58157548 58157685 -139037747 - B1_Mm SINE Alu -10 137 1 2 1028 1304 152 18 0 chr1 58157916 58158139 -139037293 - RLTR28B LTR ERVL 0 481 255 2 1028 989 233 14 5 chr1 58158743 58158950 -139036482 + B3 SINE B2 1 209 -7 2 1028 768 22 0 0 chr1 58158950 58159040 -139036392 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 2 1028 761 272 43 14 chr1 58159054 58159263 -139036169 + ID_B1 SINE B4 2 216 -8 2 1028 441 0 0 0 chr1 58159813 58159862 -139035570 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 1028 910 268 62 25 chr1 58160072 58160348 -139035084 + B4A SINE B4 1 286 -6 2 1028 24 0 0 0 chr1 58162039 58162063 -139033369 + AT_rich Low_complexity Low_complexity 1 24 0 2 1028 393 227 0 0 chr1 58163580 58163668 -139031764 + PB1D10 SINE Alu 29 116 -1 2 1028 646 136 8 8 chr1 58163745 58163864 -139031568 + GA-rich Low_complexity Low_complexity 2 120 0 2 1028 1153 292 161 19 chr1 58163905 58164595 -139030837 + L1MB5 LINE L1 5267 6050 -124 2 1028 1333 222 116 3 chr1 58164633 58164995 -139030437 - MTD LTR MaLR -16 403 1 2 1028 424 242 92 0 chr1 58165460 58165580 -139029852 - B1_Mur1 SINE Alu -10 139 9 2 1028 234 347 64 12 chr1 58165750 58165922 -139029510 + L2 LINE L2 2617 2797 -622 2 1028 330 282 103 26 chr1 58166455 58166723 -139028709 + ERVL-int LTR ERVL 3462 3932 -1825 2 1028 2043 168 30 19 chr1 58166773 58167143 -139028289 - ORR1D1 LTR MaLR 0 374 1 2 1028 3793 48 130 10 chr1 58167385 58167885 -139027547 + LTRIS2 LTR ERV1 5 564 0 2 1028 591 15 0 0 chr1 58168502 58168570 -139026862 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1028 537 16 0 0 chr1 58168570 58168631 -139026801 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1028 198 0 0 0 chr1 58168895 58168917 -139026515 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1028 663 112 0 0 chr1 58168940 58169065 -139026367 + (TCTCTG)n Simple_repeat Simple_repeat 4 128 0 2 1028 244 259 281 15 chr1 58169065 58169209 -139026223 - B3 SINE B2 -33 183 2 2 1028 241 299 86 36 chr1 58169289 58169375 -139026057 - MIR SINE MIR -21 241 158 2 1028 207 25 75 0 chr1 58169375 58169415 -139026017 + (TTG)n Simple_repeat Simple_repeat 2 44 0 2 1028 241 299 86 36 chr1 58169415 58169467 -139025965 - MIR SINE MIR -105 157 96 2 1028 328 216 73 35 chr1 58170664 58170777 -139024655 + B1_Mur4 SINE Alu 14 148 -2 2 1028 216 0 0 0 chr1 58171321 58171345 -139024087 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1028 351 315 78 83 chr1 58172064 58172306 -139023126 + B4 SINE B4 41 281 -11 2 1028 234 0 0 0 chr1 58172311 58172337 -139023095 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1028 276 264 0 0 chr1 58172645 58172732 -139022700 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 1028 457 259 79 59 chr1 58173298 58173450 -139021982 + ID_B1 SINE B4 3 157 -67 2 1028 1453 262 102 33 chr1 58173850 58174438 -139020994 - Lx8 LINE L1 -315 7158 6480 2 1028 180 152 0 0 chr1 58174559 58174592 -139020840 + CT-rich Low_complexity Low_complexity 2 34 0 2 1028 983 276 75 23 chr1 58175000 58175348 -139020084 + MTE2a LTR MaLR 6 371 -8 2 1028 519 275 87 55 chr1 58176459 58176713 -139018719 + MTD LTR MaLR 9 270 -149 2 1028 550 224 40 113 chr1 58176771 58176922 -139018510 + MTD LTR MaLR 234 404 -15 2 1028 557 296 7 0 chr1 58177434 58177569 -139017863 + B4A SINE B4 1 136 -156 2 1028 210 299 73 15 chr1 58177520 58177588 -139017844 + AluF_3 SINE Alu 138 209 -102 2 1028 417 39 0 0 chr1 58177712 58177763 -139017669 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1028 220 291 58 11 chr1 58178549 58178636 -139016796 - L3 LINE CR1 -877 3612 3522 2 1028 281 310 43 8 chr1 58180567 58180684 -139014748 - MIR SINE MIR -132 130 10 2 1028 357 274 185 35 chr1 58181233 58181493 -139013939 - LTR40b LTR ERVL -4 461 166 2 1028 579 306 84 75 chr1 58182543 58182889 -139012543 - MER21B LTR ERV1 -79 784 436 2 1028 534 292 12 30 chr1 58183038 58183204 -139012228 - RSINE1 SINE B4 -1 164 2 2 1028 383 297 27 61 chr1 58183221 58183368 -139012064 + B1F1 SINE Alu 7 148 -1 2 1028 218 397 24 32 chr1 58183795 58183920 -139011512 + MIR SINE MIR 22 145 -117 2 1028 303 223 0 153 chr1 58184062 58184173 -139011259 - MLT1C LTR MaLR -17 450 357 2 1028 232 372 0 0 chr1 58184613 58184761 -139010671 + C-rich Low_complexity Low_complexity 1 148 0 2 1028 306 277 19 38 chr1 58185302 58185407 -139010025 + L1M5 LINE L1 5611 5713 -411 2 1028 360 0 0 0 chr1 58185798 58185838 -139009594 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1028 32229 67 5 16 chr1 58185894 58187603 -139007829 - L1_Mus2 LINE L1 0 6566 4872 2 1028 1253 145 0 5 chr1 58187603 58187797 -139007635 + B2_Mm2 SINE B2 1 193 -2 2 1028 32229 108 10 16 chr1 58187797 58192082 -139003350 - L1_Mus2 LINE L1 -1012 4871 181 2 1028 323 326 50 40 chr1 58192392 58192593 -139002839 - MER115 DNA Tip100 -422 271 69 2 1028 482 313 37 0 chr1 58193443 58193606 -139001826 - RMER5 LTR ERV1 0 534 366 2 1028 1195 83 0 22 chr1 58193607 58193791 -139001641 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1028 694 196 37 8 chr1 58193796 58193930 -139001502 + B1_Mus2 SINE Alu 1 138 -9 2 1028 357 162 0 0 chr1 58193943 58194011 -139001421 + GA-rich Low_complexity Low_complexity 2 69 0 2 1028 464 297 57 36 chr1 58194545 58194793 -139000639 - RMER5 LTR ERV1 -281 253 1 2 1028 543 320 65 83 chr1 58195777 58195946 -138999486 - Charlie1b DNA MER1_type -18 505 345 2 128 1028 225 14 27 chr1 58195946 58196165 -138999267 - B3 SINE B2 0 216 1 2 1029 543 320 65 83 chr1 58196165 58196503 -138998929 - Charlie1b DNA MER1_type -179 344 7 2 1029 702 206 27 0 chr1 58197561 58197707 -138997725 - B3 SINE B2 0 216 67 2 1029 181 345 12 12 chr1 58197717 58197802 -138997630 - MIR SINE MIR -87 121 37 2 1029 1017 140 0 0 chr1 58198737 58198915 -138996517 + (TCC)n Simple_repeat Simple_repeat 3 180 0 2 1029 752 189 0 16 chr1 58198917 58199100 -138996332 + CT-rich Low_complexity Low_complexity 1 180 0 2 1029 215 375 0 0 chr1 58199199 58199263 -138996169 - B4A SINE B4 -143 149 86 2 1029 267 130 0 0 chr1 58200604 58200658 -138994774 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1029 1285 14 7 0 chr1 58200660 58200806 -138994626 - B1_Mm SINE Alu 0 147 1 2 1029 565 278 15 22 chr1 58200838 58200974 -138994458 + B1F SINE Alu 1 135 -14 2 1029 357 86 0 0 chr1 58200975 58201033 -138994399 + (TCTG)n Simple_repeat Simple_repeat 2 59 0 2 1029 261 0 0 0 chr1 58201033 58201062 -138994370 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1029 585 308 41 37 chr1 58202289 58202532 -138992900 + B4A SINE B4 3 246 -46 2 1029 248 221 57 29 chr1 58204383 58204453 -138990979 + MTE2a LTR MaLR 16 87 -292 3 1029 625 288 120 25 chr1 58204467 58204741 -138990691 + MTE2a LTR MaLR 62 361 -18 3 1029 341 323 137 24 chr1 58205036 58205328 -138990104 - MER21B LTR ERV1 -106 757 433 3 1029 390 354 41 20 chr1 58205481 58205628 -138989804 - MER21B LTR ERV1 -666 197 48 3 1029 384 132 0 0 chr1 58205835 58205918 -138989514 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 3 1029 249 318 0 0 chr1 58205919 58205985 -138989447 - ID4_ SINE ID -17 66 1 3 1029 297 0 0 0 chr1 58206113 58206146 -138989286 + (CAGGA)n Simple_repeat Simple_repeat 2 34 0 3 1029 264 363 81 12 chr1 58206191 58206364 -138989068 + MARNA DNA Mariner 189 373 -213 3 1029 1584 37 27 0 chr1 58206912 58207100 -138988332 - B2_Mm1t SINE B2 0 193 1 3 1029 528 16 0 0 chr1 58207282 58207343 -138988089 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1029 765 61 0 0 chr1 58208065 58208164 -138987268 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 3 1029 289 105 392 20 chr1 58208164 58208261 -138987171 - B2_Mm2 SINE B2 -16 179 47 3 1029 1025 88 12 54 chr1 58208326 58208494 -138986938 - B2_Mm1t SINE B2 -12 181 21 3 1029 307 226 60 81 chr1 58209055 58209204 -138986228 + L1MC4 LINE L1 7719 7864 -178 3 1029 2235 187 152 43 chr1 58210520 58211620 -138983812 - RMER1A Other Other 0 1066 15 3 1029 5727 48 3 0 chr1 58211933 58212628 -138982804 - L1Md_A LINE L1 0 6582 5886 3 1029 414 357 70 54 chr1 58212675 58213160 -138982272 + L1M5 LINE L1 4342 4834 -1312 3 1029 496 291 9 51 chr1 58213960 58214174 -138981258 - RMER15 LTR ERVL -21 554 350 3 1029 333 0 0 0 chr1 58216074 58216111 -138979321 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1029 232 318 0 0 chr1 58216112 58216178 -138979254 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 3 1029 195 326 35 0 chr1 58216275 58216361 -138979071 - MIRb SINE MIR -122 146 58 3 1029 207 0 0 0 chr1 58216745 58216768 -138978664 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1029 2019 177 48 14 chr1 58217313 58217748 -138977684 - RLTR11A2 LTR ERVK -3 524 75 3 1029 4566 165 17 16 chr1 58217748 58218587 -138976845 - MYSERV6-int LTR ERVK -4692 4267 3428 3 1029 299 128 0 0 chr1 58219139 58219186 -138976246 + ID4_ SINE ID 19 65 -18 3 1029 207 0 0 0 chr1 58219208 58219231 -138976201 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1029 387 0 0 0 chr1 58219364 58219407 -138976025 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1029 198 0 0 0 chr1 58219409 58219431 -138976001 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 1029 21 71 0 0 chr1 58219542 58219584 -138975848 + AT_rich Low_complexity Low_complexity 1 42 0 3 1029 627 51 0 0 chr1 58219700 58219779 -138975653 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 1029 905 153 0 0 chr1 58220331 58220468 -138974964 - B1_Mur1 SINE Alu -11 138 2 3 1029 342 202 23 35 chr1 58220553 58220640 -138974792 + PB1D10 SINE Alu 24 109 -8 3 1029 21 36 0 0 chr1 58220976 58221004 -138974428 + AT_rich Low_complexity Low_complexity 1 28 0 3 1029 285 293 140 0 chr1 58221103 58221260 -138974172 - MER57C2 LTR ERV1 0 434 256 3 1029 261 118 0 0 chr1 58221487 58221538 -138973894 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1029 252 0 0 0 chr1 58221808 58221836 -138973596 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1029 23 0 0 0 chr1 58221952 58221975 -138973457 + AT_rich Low_complexity Low_complexity 1 23 0 3 1029 274 98 39 0 chr1 58223209 58223260 -138972172 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1029 991 248 57 4 chr1 58223292 58223555 -138971877 - B4 SINE B4 -14 278 2 3 1029 277 213 82 0 chr1 58223588 58223649 -138971783 + B1F SINE Alu 77 142 -7 3 1029 563 217 143 25 chr1 58223660 58223821 -138971611 + B3A SINE B2 3 182 -16 3 1029 294 29 0 0 chr1 58223837 58223872 -138971560 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1029 2074 119 0 0 chr1 58223907 58224227 -138971205 - ORR1A3-int LTR MaLR -576 1387 1068 3 1029 876 82 53 0 chr1 58225246 58225416 -138970016 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1029 360 59 0 0 chr1 58225426 58225477 -138969955 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1029 345 217 12 12 chr1 58225780 58225864 -138969568 - B4 SINE B4 -208 84 1 3 1029 387 0 0 0 chr1 58226203 58226246 -138969186 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1029 383 288 59 0 chr1 58227137 58227255 -138968177 + MER5A DNA MER1_type 1 125 -64 3 1029 202 280 141 74 chr1 58227277 58227412 -138968020 - MIR SINE MIR -113 163 20 3 1029 192 97 0 0 chr1 58228334 58228365 -138967067 + (CAAAC)n Simple_repeat Simple_repeat 1 31 0 3 1029 270 228 10 19 chr1 58229219 58229322 -138966110 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 1029 1270 105 8 99 chr1 58229353 58229596 -138965836 - URR1A DNA MER1_type 0 226 6 3 1029 210 280 65 0 chr1 58232179 58232284 -138963148 + MIR SINE MIR 45 155 -113 3 1029 626 253 126 45 chr1 58232646 58232845 -138962587 + B3 SINE B2 1 215 -1 3 1029 231 200 0 16 chr1 58232942 58233003 -138962429 - L1MB7 LINE L1 0 6184 6125 3 1029 362 272 34 45 chr1 58233003 58233120 -138962312 + PB1D10 SINE Alu 6 117 0 3 1029 21 0 0 0 chr1 58234187 58234208 -138961224 + AT_rich Low_complexity Low_complexity 1 21 0 3 1029 258 32 0 0 chr1 58235294 58235325 -138960107 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1029 378 0 0 0 chr1 58237012 58237054 -138958378 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1029 259 224 26 26 chr1 58237714 58237792 -138957640 + (CATA)n Simple_repeat Simple_repeat 4 81 0 3 1029 333 118 0 0 chr1 58237797 58237848 -138957584 + (CAT)n Simple_repeat Simple_repeat 1 51 0 3 1029 316 358 96 7 chr1 58239189 58239324 -138956108 + B1F SINE Alu 3 149 0 3 1029 1192 74 0 0 chr1 58241523 58241671 -138953761 + B1_Mus1 SINE Alu 1 148 0 3 1029 332 233 0 0 chr1 58242436 58242509 -138952923 + B1F SINE Alu 65 137 -12 3 1029 180 0 0 0 chr1 58242509 58242529 -138952903 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 1029 23 33 0 0 chr1 58242637 58242667 -138952765 + AT_rich Low_complexity Low_complexity 1 30 0 3 1029 1253 41 0 0 chr1 58243732 58243879 -138951553 + B1_Mm SINE Alu 1 147 0 3 1029 734 208 41 18 chr1 58243953 58244124 -138951308 - B3 SINE B2 0 216 42 3 1029 1977 141 3 6 chr1 58244287 58244602 -138950830 - MTC LTR MaLR 0 421 108 3 1029 276 316 0 0 chr1 58245422 58245501 -138949931 + ID4 SINE ID 2 80 -3 3 1029 441 198 0 0 chr1 58246564 58246680 -138948752 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1029 354 288 85 70 chr1 58247906 58248227 -138947205 - MLT1A1 LTR MaLR 0 365 22 3 1029 656 317 94 77 chr1 58248489 58248851 -138946581 - MTEa LTR MaLR 0 379 12 3 1029 226 264 9 9 chr1 58250299 58250406 -138945026 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 3 1029 536 274 22 44 chr1 58250412 58250595 -138944837 - MLT2C1 LTR ERVL -40 357 179 3 1029 582 258 15 0 chr1 58252100 58252232 -138943200 - B1_Mm SINE Alu -12 135 2 3 1029 183 42 0 0 chr1 58252402 58252426 -138943006 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1029 249 204 41 0 chr1 58252936 58252985 -138942447 + MIRb SINE MIR 35 85 -183 3 1029 496 138 17 0 chr1 58253400 58253516 -138941916 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 1029 444 325 18 0 chr1 58254875 58254989 -138940443 + B1F SINE Alu 19 134 -15 3 1029 211 213 0 60 chr1 58254990 58255040 -138940392 + polypurine Low_complexity Low_complexity 4 50 0 3 1029 261 0 0 0 chr1 58256071 58256100 -138939332 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1029 224 215 0 58 chr1 58257359 58257388 -138938044 + A-rich Low_complexity Low_complexity 1 28 0 3 1029 1081 95 0 13 chr1 58257388 58257537 -138937895 + B1_Mus1 SINE Alu 1 147 -1 3 1029 224 215 0 58 chr1 58257537 58257576 -138937856 + A-rich Low_complexity Low_complexity 29 65 0 3 1029 940 242 24 5 chr1 58258531 58258743 -138936689 + B3 SINE B2 1 216 0 3 1029 431 275 0 9 chr1 58258857 58258967 -138936465 - PB1D10 SINE Alu -8 109 1 3 1029 230 39 57 38 chr1 58259165 58259218 -138936214 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1029 577 267 81 24 chr1 58259837 58260048 -138935384 + MIR SINE MIR 10 232 -30 3 1029 961 32 32 0 chr1 58261493 58261619 -138933813 - ORR1A2 LTR MaLR -8 338 209 3 1029 1973 101 19 0 chr1 58261617 58261924 -138933508 - ORR1A2-int LTR MaLR -1650 313 1 3 1029 2194 109 45 0 chr1 58261924 58262237 -138933195 - ORR1A2 LTR MaLR 0 327 1 3 1029 757 304 172 24 chr1 58262534 58262952 -138932480 + Lx8 LINE L1 6878 7357 -116 3 1029 321 26 0 0 chr1 58263958 58263996 -138931436 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 3 1029 243 0 0 0 chr1 58264066 58264093 -138931339 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1029 414 0 0 0 chr1 58264093 58264138 -138931294 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1029 233 353 91 66 chr1 58264404 58264813 -138930619 + L2 LINE L2 2314 2732 -687 3 1029 419 306 51 40 chr1 58264916 58265093 -138930339 - B3A SINE B2 -16 182 4 3 1029 661 259 124 5 chr1 58265097 58265291 -138930141 - ID_B1 SINE B4 -6 218 2 3 1029 234 152 0 0 chr1 58265892 58265951 -138929481 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 3 1029 220 270 0 0 chr1 58266288 58266352 -138929080 + MIRm SINE MIR 90 153 -55 3 1029 354 235 0 0 chr1 58266352 58266454 -138928978 + (ATGGTG)n Simple_repeat Simple_repeat 6 107 0 3 1029 1126 164 45 0 chr1 58266692 58266893 -138928539 + B3 SINE B2 1 210 -6 3 1029 22 35 0 0 chr1 58266918 58266947 -138928485 + AT_rich Low_complexity Low_complexity 1 29 0 3 1029 441 280 31 57 chr1 58269975 58270134 -138925298 + B3A SINE B2 1 155 -43 4 1029 279 0 0 0 chr1 58270137 58270168 -138925264 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1029 26 50 0 0 chr1 58270204 58270244 -138925188 + AT_rich Low_complexity Low_complexity 1 40 0 4 1029 1037 109 0 13 chr1 58270258 58270407 -138925025 + B1_Mus1 SINE Alu 2 148 0 4 1029 180 111 0 0 chr1 58270409 58270436 -138924996 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1029 200 128 26 0 chr1 58270558 58270597 -138924835 + A-rich Low_complexity Low_complexity 3 42 0 4 1029 736 273 87 36 chr1 58271027 58271304 -138924128 + B4 SINE B4 1 291 -1 4 1029 184 268 0 0 chr1 58271307 58271348 -138924084 - L2b LINE L2 -46 3329 3289 4 1029 888 278 5 18 chr1 58271998 58272218 -138923214 + ID_B1 SINE B4 1 217 -7 4 1029 219 339 0 0 chr1 58273359 58273421 -138922011 - ID4_ SINE ID -20 63 2 4 1029 521 285 14 7 chr1 58273778 58273923 -138921509 - B1F SINE Alu 0 149 4 4 1029 274 266 130 60 chr1 58274533 58274727 -138920705 - RMER2 LTR ERV1 -23 544 337 4 1029 1427 186 196 72 chr1 58274727 58274815 -138920617 - RLTR20C LTR ERVK 0 534 446 4 1029 393 22 0 0 chr1 58274815 58274861 -138920571 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1029 1427 186 196 72 chr1 58274861 58275247 -138920185 - RLTR20C LTR ERVK -89 445 3 4 1029 1035 190 218 35 chr1 58275255 58275539 -138919893 - RMER2 LTR ERV1 -231 336 1 4 1029 360 0 0 0 chr1 58275626 58275666 -138919766 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1029 293 305 106 78 chr1 58275682 58276002 -138919430 - ORR1E LTR MaLR -8 351 23 4 1029 195 42 0 0 chr1 58276002 58276026 -138919406 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1029 583 173 30 30 chr1 58276026 58276157 -138919275 - Lx9 LINE L1 -11 7633 7503 4 1029 393 136 0 0 chr1 58276159 58276225 -138919207 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1029 444 86 0 0 chr1 58276233 58276303 -138919129 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1029 1086 131 55 0 chr1 58276346 58276529 -138918903 - Lx9 LINE L1 -152 7492 7300 4 1029 360 0 0 0 chr1 58277281 58277321 -138918111 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1029 307 306 12 37 chr1 58278018 58278181 -138917251 + MamRep137 DNA TcMar? 133 291 -153 4 1029 384 316 84 53 chr1 58279197 58279424 -138916008 - Lx8 LINE L1 0 7473 7240 4 1029 670 206 22 7 chr1 58280144 58280281 -138915151 - B1_Mur1 SINE Alu -8 141 3 4 1029 322 318 142 26 chr1 58281322 58281632 -138913800 - Lx8 LINE L1 -61 7412 7067 4 1029 540 89 176 8 chr1 58282269 58282394 -138913038 - HAL1-2a_MD LINE L1 -523 2501 2356 4 1029 526 308 157 0 chr1 58282950 58283135 -138912297 + ID_B1 SINE B4 9 222 -2 4 1029 240 91 0 0 chr1 58283149 58283182 -138912250 + RLTR9E LTR ERVK 268 300 -109 4 1029 720 225 0 28 chr1 58283723 58283865 -138911567 + B1F1 SINE Alu 1 138 -11 4 1029 678 218 12 49 chr1 58284524 58284688 -138910744 - ID_B1 SINE B4 -7 217 60 4 1029 405 0 0 0 chr1 58284777 58284822 -138910610 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1029 817 245 103 22 chr1 58285104 58285209 -138910223 - MTEa LTR MaLR -83 296 181 4 1029 885 19 0 0 chr1 58285209 58285312 -138910120 + (TTCTC)n Simple_repeat Simple_repeat 4 106 0 4 1029 817 245 103 22 chr1 58285312 58285477 -138909955 - MTEa LTR MaLR -199 180 6 4 1029 294 229 25 25 chr1 58286376 58286497 -138908935 + (CA)n Simple_repeat Simple_repeat 1 121 0 4 1029 23 0 0 0 chr1 58286523 58286546 -138908886 + AT_rich Low_complexity Low_complexity 1 23 0 4 1029 2202 105 49 27 chr1 58287006 58287401 -138908031 - RMER17D2 LTR ERVK 0 809 404 4 1029 739 48 0 19 chr1 58287401 58287507 -138907925 + (GGAGA)n Simple_repeat Simple_repeat 1 104 0 4 1029 2202 114 51 27 chr1 58287507 58287803 -138907629 - RMER17D2 LTR ERVK -406 403 2 4 1029 285 135 0 0 chr1 58288706 58288758 -138906674 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1029 237 319 14 0 chr1 58288825 58288894 -138906538 - MIRc SINE MIR -32 236 167 4 1029 310 312 79 7 chr1 58289354 58289493 -138905939 - MER106B DNA MER1_type -3 1056 908 4 1029 387 240 38 48 chr1 58289734 58289839 -138905593 + PB1D10 SINE Alu 9 112 -5 4 1029 351 222 106 50 chr1 58290005 58290166 -138905266 - MTEa LTR MaLR -14 365 196 4 1029 755 296 34 65 chr1 58290188 58290510 -138904922 - MTEa LTR MaLR 0 379 68 4 1029 456 19 0 0 chr1 58290863 58290916 -138904516 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1029 573 262 0 34 chr1 58292331 58292477 -138902955 + RSINE1 SINE B4 3 143 -22 4 1029 622 245 95 41 chr1 58292824 58293067 -138902365 + B4 SINE B4 3 258 -34 4 1029 243 79 0 0 chr1 58293071 58293109 -138902323 + (G)n Simple_repeat Simple_repeat 1 38 0 4 1029 180 344 0 0 chr1 58293174 58293235 -138902197 + MIRm SINE MIR 89 149 -127 4 1029 556 77 121 0 chr1 58294142 58294233 -138901199 + B2_Mm1t SINE B2 1 102 -91 4 1029 246 45 0 62 chr1 58294232 58294280 -138901152 + B2_Mm2 SINE B2 137 181 -14 4 1029 186 259 156 11 chr1 58295267 58295357 -138900075 + MIRb SINE MIR 9 111 -157 4 1029 869 256 17 94 chr1 58295524 58295821 -138899611 + B4A SINE B4 10 283 -9 4 1029 240 122 0 0 chr1 58295855 58295896 -138899536 + (CAT)n Simple_repeat Simple_repeat 1 41 0 4 1029 582 15 0 0 chr1 58296227 58296294 -138899138 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1029 832 175 7 0 chr1 58296294 58296431 -138899001 - B1_Mus2 SINE Alu -1 146 9 4 1029 275 292 18 36 chr1 58297145 58297255 -138898177 - MLT1A1 LTR MaLR -12 396 289 4 1029 1072 59 22 0 chr1 58298270 58298405 -138897027 + B1_Mus1 SINE Alu 2 139 -9 4 1029 216 0 0 0 chr1 58298405 58298429 -138897003 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1029 378 0 0 0 chr1 58298430 58298472 -138896960 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 4 1029 2214 176 87 21 chr1 58298787 58299269 -138896163 + L1_Mur3 LINE L1 4180 4693 -1187 4 1029 237 305 0 0 chr1 58299293 58299352 -138896080 + Lx7 LINE L1 6253 6311 -1385 4 1029 1101 149 11 0 chr1 58299335 58299523 -138895909 - L1_Mur3 LINE L1 -2351 3529 3340 4 1029 351 0 0 0 chr1 58299531 58299570 -138895862 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1029 1186 179 64 48 chr1 58299572 58299884 -138895548 + Lx7 LINE L1 7364 7680 -16 4 1029 4966 140 47 23 chr1 58299884 58300181 -138895251 - L1_Mur3 LINE L1 -1696 4184 3884 4 1029 1474 74 16 0 chr1 58300181 58300371 -138895061 - B2_Mm2 SINE B2 -2 193 1 4 1029 4966 140 47 23 chr1 58300371 58300972 -138894460 - L1_Mur3 LINE L1 -1997 3883 3265 4 1029 1033 226 170 11 chr1 58300943 58301296 -138894136 - L1_Mur3 LINE L1 -6809 919 511 4 1029 210 91 0 0 chr1 58301645 58301678 -138893754 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1029 504 0 0 0 chr1 58301678 58301733 -138893699 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1029 286 234 25 25 chr1 58301743 58301822 -138893610 - B4 SINE B4 -212 80 2 4 1029 420 293 35 0 chr1 58303620 58303736 -138891696 + PB1D9 SINE Alu 1 120 0 4 1029 414 182 524 14 chr1 58303864 58304009 -138891423 - ID_B1 SINE B4 -4 220 2 4 1029 187 385 24 71 chr1 58304555 58304723 -138890709 + MIR SINE MIR 31 190 -72 4 1029 24 32 0 0 chr1 58305640 58305671 -138889761 + AT_rich Low_complexity Low_complexity 1 31 0 4 1029 288 0 0 0 chr1 58306063 58306095 -138889337 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1029 867 189 0 7 chr1 58306097 58306246 -138889186 - B1_Mur2 SINE Alu 0 149 2 4 1029 1015 180 95 0 chr1 58306709 58306898 -138888534 - B3 SINE B2 -5 211 5 4 1029 1029 108 0 0 chr1 58307166 58307305 -138888127 + B1_Mur4 SINE Alu 1 139 -11 4 1029 826 247 89 147 chr1 58307488 58307546 -138887886 + L1MB7 LINE L1 5328 5378 -806 4 1029 1564 199 74 111 chr1 58307546 58308088 -138887344 - RLTR11A LTR ERVK -2 526 5 4 1029 826 247 89 147 chr1 58308088 58308655 -138886777 + L1MB7 LINE L1 5379 5917 -267 4 1029 496 175 0 40 chr1 58309638 58309739 -138885693 + PB1D9 SINE Alu 24 120 0 4 1029 829 123 20 0 chr1 58309747 58309893 -138885539 + (GGGA)n Simple_repeat Simple_repeat 2 150 0 4 1029 691 44 0 0 chr1 58310152 58310243 -138885189 + B1_Mus2 SINE Alu 57 147 0 4 1029 461 63 0 0 chr1 58310267 58310330 -138885102 - B1_Mus1 SINE Alu -83 65 3 4 1029 358 302 115 27 chr1 58311469 58311726 -138883706 - MLT1H2 LTR MaLR -203 346 35 4 1029 1104 75 0 20 chr1 58311842 58311992 -138883440 + B1_Mm SINE Alu 1 147 0 4 1029 354 134 0 0 chr1 58312173 58312240 -138883192 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1029 2124 166 175 22 chr1 58312854 58313311 -138882121 - RLTR11A2 LTR ERVK 0 527 1 4 1029 252 0 0 0 chr1 58314254 58314282 -138881150 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1029 193 89 44 0 chr1 58314471 58314516 -138880916 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 4 1029 328 262 0 23 chr1 58314985 58315071 -138880361 - HAL1-3A_ME LINE L1 -799 2059 1976 4 1029 189 265 0 0 chr1 58315088 58315171 -138880261 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1029 375 105 0 0 chr1 58315183 58315240 -138880192 - HAL1-3A_ME LINE L1 -835 2023 1967 4 1029 238 296 0 0 chr1 58315254 58315308 -138880124 - RSINE1 SINE B4 -109 56 3 4 1029 371 258 21 0 chr1 58316633 58316730 -138878702 - MER103 DNA DNA -65 101 3 4 1029 462 220 0 21 chr1 58317039 58317183 -138878249 + GA-rich Low_complexity Low_complexity 1 141 0 4 1029 322 250 26 0 chr1 58317452 58317528 -138877904 - ID SINE ID -135 89 12 4 1029 671 201 30 0 chr1 58317677 58317811 -138877621 + B1_Mur3 SINE Alu 1 138 -11 4 1029 570 29 0 0 chr1 58317813 58317881 -138877551 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 4 1029 875 149 177 0 chr1 58317892 58318067 -138877365 + B3 SINE B2 5 210 -6 4 1029 440 248 9 27 chr1 58318092 58318204 -138877228 + PB1D10 SINE Alu 1 110 -7 4 1029 471 226 119 8 chr1 58318266 58318400 -138877032 + B1_Mur3 SINE Alu 1 149 0 5 1029 403 211 198 26 chr1 58318447 58318610 -138876822 - B3 SINE B2 -2 193 5 5 1029 355 268 63 51 chr1 58318761 58318991 -138876441 + B3A SINE B2 1 216 0 5 1029 266 237 26 26 chr1 58319114 58319192 -138876240 + B1_Mus1 SINE Alu 27 104 -44 5 1029 459 52 0 0 chr1 58319194 58319252 -138876180 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1029 583 206 12 0 chr1 58319541 58319701 -138875731 + (CA)n Simple_repeat Simple_repeat 1 162 0 5 1029 1417 75 16 0 chr1 58320905 58321092 -138874340 - B2_Mm1t SINE B2 -2 191 2 5 1029 237 236 0 18 chr1 58321301 58321357 -138874075 + PB1D10 SINE Alu 53 107 -10 5 1029 228 221 19 37 chr1 58321367 58321475 -138873957 + GA-rich Low_complexity Low_complexity 2 107 0 5 1029 287 244 60 52 chr1 58322030 58322164 -138873268 - MLT1B LTR MaLR -16 374 240 5 1029 409 299 27 20 chr1 58322198 58322348 -138873084 - MLT1B LTR MaLR -239 151 1 5 1029 444 19 0 0 chr1 58322823 58322876 -138872556 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1029 321 203 29 14 chr1 58323087 58323157 -138872275 + ID4 SINE ID 13 83 0 5 1029 511 248 0 0 chr1 58324309 58324418 -138871014 + PB1D10 SINE Alu 3 111 -6 5 1029 417 261 129 103 chr1 58325142 58325492 -138869940 + MLT1A0 LTR MaLR 7 365 0 5 1029 443 317 164 9 chr1 58325944 58326176 -138869256 + B4A SINE B4 3 270 -22 5 1029 180 0 0 0 chr1 58326185 58326205 -138869227 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1029 943 299 84 40 chr1 58326613 58327017 -138868415 + Lx8 LINE L1 6639 7060 -413 5 128 521 283 81 6 chr1 58327014 58327188 -138868244 - Lx8 LINE L1 -867 6606 6420 5 1030 570 138 0 0 chr1 58327254 58327363 -138868069 + (CAGA)n Simple_repeat Simple_repeat 2 110 0 5 1030 327 25 0 0 chr1 58328005 58328045 -138867387 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1030 513 0 0 0 chr1 58328045 58328101 -138867331 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1030 238 203 67 13 chr1 58328263 58328338 -138867094 + ID4_ SINE ID 3 81 -2 5 1030 719 216 57 6 chr1 58328280 58328457 -138866975 + ID_B1 SINE B4 23 208 -16 5 1030 195 139 0 0 chr1 58328460 58328496 -138866936 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1030 742 69 0 0 chr1 58329099 58329200 -138866232 - B1_Mm SINE Alu -46 101 1 5 1030 1131 108 18 69 chr1 58329200 58329418 -138866014 - MYSERV16_I-int LTR ERVK -969 1357 1151 5 1030 7668 163 63 14 chr1 58329419 58331795 -138863637 + Lx5 LINE L1 4539 7050 0 5 1030 1105 217 237 4 chr1 58331813 58332091 -138863341 + Lx8 LINE L1 6795 7137 -336 5 1030 252 312 76 46 chr1 58333111 58333242 -138862190 - L2b LINE L2 -1 3374 3240 5 1030 800 86 0 0 chr1 58333287 58333392 -138862040 + B2_Mm2 SINE B2 3 107 -88 5 1030 562 198 27 0 chr1 58333471 58333582 -138861850 + B1_Mur1 SINE Alu 1 114 -35 5 1030 293 0 27 0 chr1 58333603 58333640 -138861792 + (ATG)n Simple_repeat Simple_repeat 1 38 0 5 1030 222 294 17 113 chr1 58335488 58335603 -138859829 + MIR SINE MIR 34 137 -71 5 1030 1346 156 24 5 chr1 58335790 58336002 -138859430 - URR1B DNA MER1_type -3 222 7 5 1030 193 184 0 75 chr1 58336047 58336100 -138859332 - L3 LINE CR1 -943 3546 3498 5 1030 182 191 0 21 chr1 58336461 58336489 -138858943 + G-rich Low_complexity Low_complexity 1 28 0 5 1030 2152 133 26 43 chr1 58336489 58336906 -138858526 - RMER17C LTR ERVK 0 410 1 5 1030 182 191 0 21 chr1 58336906 58336925 -138858507 + G-rich Low_complexity Low_complexity 29 47 0 5 1030 558 0 0 0 chr1 58338861 58338923 -138856509 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1030 199 330 87 11 chr1 58339299 58339391 -138856041 - MIRb SINE MIR -94 174 76 5 1030 1027 80 72 7 chr1 58340553 58340691 -138854741 + B1_Mus1 SINE Alu 2 148 0 5 1030 270 0 0 0 chr1 58340707 58340737 -138854695 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1030 831 182 204 0 chr1 58340885 58341066 -138854366 + ID_B1 SINE B4 1 218 -6 5 1030 696 256 72 12 chr1 58341076 58341242 -138854190 + B3 SINE B2 3 178 -38 5 1030 334 286 32 32 chr1 58341812 58341935 -138853497 - MER5A1 DNA MER1_type -4 162 40 5 1030 621 305 108 50 chr1 58342759 58343183 -138852249 - MLT1C LTR MaLR -18 449 1 5 1030 641 114 9 0 chr1 58343339 58343444 -138851988 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 1030 300 53 0 0 chr1 58343547 58343585 -138851847 + (TAA)n Simple_repeat Simple_repeat 3 40 0 5 1030 341 244 0 24 chr1 58344162 58344246 -138851186 + ID4_ SINE ID 2 83 0 5 1030 855 223 37 5 chr1 58344288 58344477 -138850955 + B3A SINE B2 3 197 -1 5 1030 288 0 0 0 chr1 58348602 58348634 -138846798 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1030 346 319 72 29 chr1 58349770 58349909 -138845523 - L2a LINE L2 -4 3422 3278 5 1030 348 160 124 124 chr1 58349912 58350033 -138845399 + MT2B LTR ERVL 143 263 -338 5 1030 679 143 0 9 chr1 58349932 58350038 -138845394 + B1_Mur4 SINE Alu 15 119 -31 5 1030 336 313 155 78 chr1 58350348 58350896 -138844536 - L2a LINE L2 -535 2884 2295 5 1030 301 219 15 59 chr1 58351627 58351695 -138843737 + ID4 SINE ID 15 79 -4 5 1030 259 267 17 0 chr1 58352077 58352137 -138843295 - tRNA-Ala-GCA tRNA tRNA -9 66 6 5 1030 271 148 0 83 chr1 58352156 58352252 -138843180 + T-rich Low_complexity Low_complexity 1 88 0 5 1030 586 217 32 77 chr1 58352252 58352407 -138843025 - B1_Mur1 SINE Alu 0 149 2 5 1030 223 321 49 12 chr1 58353135 58353217 -138842215 - MIRm SINE MIR -112 164 80 5 1030 297 128 0 0 chr1 58353795 58353842 -138841590 + (CTG)n Simple_repeat Simple_repeat 1 47 0 5 1030 337 194 34 92 chr1 58353869 58353988 -138841444 + PB1D10 SINE Alu 5 116 -1 5 1030 839 186 215 0 chr1 58354219 58354396 -138841036 - B3 SINE B2 0 216 2 5 1030 587 14 14 0 chr1 58354432 58354504 -138840928 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 5 1030 478 252 61 0 chr1 58354506 58354605 -138840827 - PB1D10 SINE Alu -12 105 1 5 1030 619 309 84 16 chr1 58356177 58356368 -138839064 + B4 SINE B4 2 205 -87 5 1030 351 0 0 0 chr1 58356404 58356443 -138838989 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1030 338 289 58 0 chr1 58356983 58357087 -138838345 + L3 LINE CR1 3873 3982 -507 5 1030 670 270 34 6 chr1 58357823 58358002 -138837430 + B3A SINE B2 5 188 -10 5 1030 731 242 30 45 chr1 58358058 58358257 -138837175 + B3A SINE B2 3 198 0 5 1030 571 127 250 17 chr1 58358284 58358404 -138837028 + B1_Mur2 SINE Alu 1 148 -1 5 1030 492 18 0 0 chr1 58358670 58358727 -138836705 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1030 333 0 0 0 chr1 58358727 58358763 -138836669 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1030 279 0 0 0 chr1 58358763 58358793 -138836639 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1030 230 269 0 0 chr1 58358816 58358868 -138836564 - RSINE1 SINE B4 -111 54 3 5 1030 481 114 0 0 chr1 58359677 58359747 -138835685 - URR1B DNA MER1_type 0 225 156 5 1030 201 108 0 0 chr1 58359747 58359784 -138835648 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1030 602 165 0 0 chr1 58359784 58359881 -138835551 - URR1B DNA MER1_type -67 158 62 5 1030 237 33 0 0 chr1 58361014 58361044 -138834388 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1030 217 265 0 0 chr1 58361171 58361220 -138834212 + B3A SINE B2 11 59 -139 5 1030 407 298 43 17 chr1 58362329 58362445 -138832987 + PB1D7 SINE Alu 1 119 -1 5 1030 509 290 66 133 chr1 58362445 58362700 -138832732 - MLT1C LTR MaLR -96 371 124 5 1030 319 314 66 70 chr1 58362996 58363253 -138832179 - L1ME1 LINE L1 0 6179 5924 5 1030 262 19 113 0 chr1 58363645 58363698 -138831734 - B2_Mm2 SINE B2 0 195 137 5 1030 966 111 183 0 chr1 58363780 58363933 -138831499 - B2_Mm2 SINE B2 -13 182 2 5 1030 450 0 0 0 chr1 58364680 58364730 -138830702 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1030 910 232 82 82 chr1 58364730 58365143 -138830289 - RMER10A LTR ERVL -29 413 1 5 1030 657 194 0 0 chr1 58365187 58365347 -138830085 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1030 243 0 0 0 chr1 58366287 58366314 -138829118 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1030 847 235 24 24 chr1 58366319 58366524 -138828908 + ID_B1 SINE B4 1 205 -19 5 1030 860 156 246 0 chr1 58367236 58367415 -138828017 - URR1A DNA MER1_type -3 223 1 5 1030 363 302 45 39 chr1 58367605 58367760 -138827672 + MIR SINE MIR 86 241 -21 5 1030 243 0 0 0 chr1 58367834 58367861 -138827571 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1030 419 260 75 91 chr1 58367927 58367971 -138827461 - MLT1B LTR MaLR 0 390 354 5 1030 1053 188 43 5 chr1 58367971 58368179 -138827253 + B3 SINE B2 1 216 0 5 1030 419 285 96 76 chr1 58368179 58368421 -138827011 - MLT1B LTR MaLR -37 353 56 5 1030 434 210 10 50 chr1 58368870 58369015 -138826417 - B4 SINE B4 -22 143 8 5 1030 1341 169 5 0 chr1 58369283 58369496 -138825936 + B3 SINE B2 3 216 0 5 1030 403 291 152 43 chr1 58369956 58370228 -138825204 - MLT1A1 LTR MaLR -12 396 46 5 1030 431 319 105 108 chr1 58370264 58370417 -138825015 - MLT1J LTR MaLR -144 368 204 5 1030 730 196 14 20 chr1 58370417 58370563 -138824869 + B1_Mur2 SINE Alu 5 149 0 5 1030 431 319 105 108 chr1 58370563 58370760 -138824672 - MLT1J LTR MaLR -309 203 19 5 1030 217 225 44 22 chr1 58371775 58371866 -138823566 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1030 225 194 48 16 chr1 58371777 58371840 -138823592 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 5 1030 446 333 82 19 chr1 58371883 58372091 -138823341 + MIR SINE MIR 25 245 -17 6 1030 2195 113 54 20 chr1 58372189 58372541 -138822891 + MTC LTR MaLR 1 364 -57 6 1030 256 213 16 16 chr1 58372523 58372585 -138822847 - B1_Mus1 SINE Alu -82 66 5 6 1030 38304 69 17 8 chr1 58373294 58379413 -138816019 - L1Md_F3 LINE L1 0 6587 412 6 1030 784 0 21 0 chr1 58379878 58379974 -138815458 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1030 365 245 117 10 chr1 58380088 58380191 -138815241 - B3 SINE B2 -5 211 98 6 1030 3293 14 0 3 chr1 58380191 58380559 -138814873 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1030 56879 23 15 2 chr1 58380559 58386946 -138808486 - IAPEz-int LTR ERVK 0 6481 8 6 1030 3293 14 0 3 chr1 58386946 58387314 -138808118 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1030 616 196 0 0 chr1 58387314 58387416 -138808016 - B3 SINE B2 -113 103 2 6 1030 798 246 192 6 chr1 58387960 58388320 -138807112 - Lx8 LINE L1 0 7473 7047 6 1030 699 261 99 15 chr1 58388323 58388525 -138806907 - ID_B1 SINE B4 -4 220 2 6 1030 938 135 7 33 chr1 58388557 58388710 -138806722 + B1_Mur4 SINE Alu 2 150 0 6 1030 806 142 44 15 chr1 58389095 58389231 -138806201 + B1_Mur2 SINE Alu 10 149 0 6 1030 281 320 0 0 chr1 58390081 58390156 -138805276 + GA-rich Low_complexity Low_complexity 1 75 0 6 1030 208 261 29 0 chr1 58390428 58390497 -138804935 + MER5B DNA MER1_type 108 178 0 6 1030 27 0 0 0 chr1 58390582 58390609 -138804823 + AT_rich Low_complexity Low_complexity 1 27 0 6 1030 893 105 160 19 chr1 58390617 58390773 -138804659 + B2_Mm1t SINE B2 2 179 -14 6 1030 271 66 396 28 chr1 58390820 58390929 -138804503 + B2_Mm2 SINE B2 47 195 0 6 1030 393 164 0 0 chr1 58391262 58391335 -138804097 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 6 1030 276 292 0 14 chr1 58391427 58391500 -138803932 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 6 1030 729 271 38 31 chr1 58391852 58392142 -138803290 + B4A SINE B4 1 292 0 6 1030 872 79 118 0 chr1 58392912 58393039 -138802393 + B1_Mus1 SINE Alu 1 142 -6 6 1030 1524 47 21 5 chr1 58393079 58393270 -138802162 + B2_Mm2 SINE B2 2 195 0 6 1030 2209 126 148 15 chr1 58393608 58393784 -138801648 - RMER6A LTR ERVK -235 521 328 6 1030 465 34 0 0 chr1 58393784 58393843 -138801589 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1030 2209 126 148 15 chr1 58393843 58394126 -138801306 - RMER6A LTR ERVK -429 327 2 6 1030 208 135 0 0 chr1 58394496 58394533 -138800899 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1030 720 204 61 56 chr1 58394631 58394828 -138800604 + B3A SINE B2 1 198 0 6 1030 860 159 58 0 chr1 58394835 58394973 -138800459 + B1_Mus1 SINE Alu 2 147 -1 6 1030 237 119 0 0 chr1 58394973 58395015 -138800417 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6 1030 286 250 29 0 chr1 58395800 58395868 -138799564 + ID4_ SINE ID 1 70 -13 6 1030 213 218 18 0 chr1 58396137 58396176 -138799256 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 6 1030 246 62 0 0 chr1 58396176 58396208 -138799224 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 6 1030 213 218 18 0 chr1 58396208 58396223 -138799209 + (TAGA)n Simple_repeat Simple_repeat 3 17 0 6 1030 518 203 0 8 chr1 58397288 58397407 -138798025 + (CA)n Simple_repeat Simple_repeat 2 119 0 6 1030 378 321 58 37 chr1 58397467 58397658 -138797774 + MIRb SINE MIR 40 234 -34 6 1030 277 375 80 40 chr1 58398013 58398238 -138797194 - MER21B LTR ERV1 -272 591 358 6 1030 205 200 0 0 chr1 58398968 58399008 -138796424 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 6 1030 472 277 114 0 chr1 58399112 58399296 -138796136 - MLT1C LTR MaLR -203 264 60 6 1030 272 250 20 120 chr1 58399924 58400024 -138795408 + MT2B LTR ERVL 158 247 -354 6 1030 588 235 57 35 chr1 58399939 58400080 -138795352 + B1_Mur1 SINE Alu 6 149 0 6 1030 1185 168 29 5 chr1 58400231 58400435 -138794997 - B3 SINE B2 -7 209 1 6 1030 492 18 0 0 chr1 58400940 58400997 -138794435 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1030 270 278 0 89 chr1 58401004 58401083 -138794349 - ID4 SINE ID -10 73 2 6 1030 665 221 0 35 chr1 58401110 58401243 -138794189 + B1_Mus2 SINE Alu 6 136 -11 6 1030 201 74 0 0 chr1 58401243 58401270 -138794162 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1030 665 221 0 35 chr1 58401270 58401281 -138794151 + B1_Mus2 SINE Alu 137 145 -2 6 1030 861 145 27 14 chr1 58401296 58401443 -138793989 + B1_Mur3 SINE Alu 1 149 0 6 1030 518 264 50 0 chr1 58401581 58401702 -138793730 - RSINE1 SINE B4 -36 129 3 6 1030 368 255 21 11 chr1 58402280 58402375 -138793057 + B3A SINE B2 39 134 -64 6 1030 560 202 41 21 chr1 58402535 58402653 -138792779 + B1_Mur2 SINE Alu 25 144 -5 6 1030 415 157 11 11 chr1 58402677 58402767 -138792665 + GA-rich Low_complexity Low_complexity 4 93 0 6 1030 812 232 0 7 chr1 58402780 58402932 -138792500 + RSINE1 SINE B4 5 155 -10 6 1030 21 57 0 0 chr1 58402949 58402984 -138792448 + AT_rich Low_complexity Low_complexity 1 35 0 6 1030 1092 212 120 23 chr1 58403318 58403618 -138791814 - ORR1D2 LTR MaLR -41 329 1 6 1030 236 331 20 123 chr1 58403842 58404045 -138791387 - MLT1J1 LTR MaLR -257 187 6 6 1030 776 195 160 11 chr1 58404323 58404510 -138790922 - B3 SINE B2 -1 215 1 6 1030 344 270 56 11 chr1 58404516 58404634 -138790798 - B1F SINE Alu -7 142 6 6 1030 653 169 2 6 chr1 58405002 58405126 -138790306 - B1_Mus1 SINE Alu 0 120 1 6 1030 273 57 0 0 chr1 58405128 58405163 -138790269 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1030 306 73 0 0 chr1 58405225 58405266 -138790166 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1030 1184 48 0 0 chr1 58405266 58405411 -138790021 - B1_Mm SINE Alu 0 147 3 6 1030 225 246 0 0 chr1 58406315 58406372 -138789060 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1030 318 50 0 0 chr1 58406411 58406451 -138788981 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 6 1030 786 170 0 0 chr1 58406460 58406607 -138788825 + CT-rich Low_complexity Low_complexity 1 147 0 6 1030 985 110 0 33 chr1 58406607 58406757 -138788675 - B1_Mur4 SINE Alu -1 149 5 6 1030 1168 36 0 7 chr1 58406876 58407016 -138788416 + B1_Mus1 SINE Alu 5 143 -5 6 1030 420 178 0 0 chr1 58407385 58407458 -138787974 - ID4_ SINE ID -9 74 2 6 1030 243 0 0 0 chr1 58407832 58407859 -138787573 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1030 844 276 14 5 chr1 58408789 58409004 -138786428 - ID_B1 SINE B4 -6 218 2 6 1030 605 268 7 0 chr1 58409129 58409267 -138786165 - RSINE1 SINE B4 -19 146 8 6 1030 442 267 0 0 chr1 58409554 58409670 -138785762 + MER53 DNA hAT 5 120 -73 6 1030 1060 83 0 19 chr1 58409978 58410138 -138785294 + B2_Mm2 SINE B2 30 186 -9 6 1030 207 0 0 0 chr1 58410228 58410251 -138785181 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1030 369 0 0 0 chr1 58410251 58410291 -138785141 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1030 236 316 152 8 chr1 58410711 58410829 -138784603 - RSINE1 SINE B4 -16 149 15 6 1030 24 0 0 0 chr1 58410834 58410858 -138784574 + AT_rich Low_complexity Low_complexity 1 24 0 6 1030 397 239 0 0 chr1 58410869 58410940 -138784492 - ID4 SINE ID -6 77 7 6 1030 22 80 0 0 chr1 58410946 58410996 -138784436 + AT_rich Low_complexity Low_complexity 1 50 0 6 1030 267 152 0 0 chr1 58411615 58411661 -138783771 + T-rich Low_complexity Low_complexity 1 46 0 6 1030 961 122 13 20 chr1 58411676 58411827 -138783605 - B1_Mur4 SINE Alu 0 150 1 6 1030 466 230 34 50 chr1 58411838 58411957 -138783475 - PB1D10 SINE Alu 0 117 1 6 1030 830 262 33 72 chr1 58411983 58412287 -138783145 + B4 SINE B4 1 292 0 6 1030 401 18 54 0 chr1 58412421 58412477 -138782955 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1030 201 74 0 0 chr1 58412676 58412703 -138782729 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 6 1030 239 245 0 0 chr1 58412703 58412756 -138782676 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1030 319 24 0 23 chr1 58412756 58412799 -138782633 + HAL1-3A_ME LINE L1 1976 2017 -841 6 1030 381 336 81 0 chr1 58412799 58412948 -138782484 + MER20 DNA MER1_type 45 205 -14 6 1030 966 70 0 128 chr1 58413109 58413273 -138782159 + B1_Mus1 SINE Alu 5 147 -1 6 1030 915 79 224 7 chr1 58413311 58413463 -138781969 + B2_Mm2 SINE B2 5 189 -6 6 1030 1177 168 268 34 chr1 58413491 58413849 -138781583 + RMER10A LTR ERVL 1 442 0 6 1030 396 250 27 0 chr1 58414104 58414216 -138781216 + PB1D10 SINE Alu 3 117 0 6 1030 364 295 35 26 chr1 58414253 58414368 -138781064 + B1F2 SINE Alu 34 149 0 6 1030 305 325 0 0 chr1 58414380 58414460 -138780972 + ID4_ SINE ID 3 82 -1 6 1030 207 266 0 0 chr1 58414721 58414894 -138780538 + (CTATA)n Simple_repeat Simple_repeat 4 176 0 6 1030 1241 209 142 14 chr1 58414899 58415258 -138780174 + MTD LTR MaLR 1 405 -14 6 1030 380 35 70 0 chr1 58415504 58415561 -138779871 + B1_Mur4 SINE Alu 1 61 -89 6 1030 514 153 69 30 chr1 58415637 58415738 -138779694 + B1_Mur1 SINE Alu 45 149 0 6 1030 223 250 0 0 chr1 58416034 58416082 -138779350 + B1F1 SINE Alu 5 52 -97 6 1030 416 198 61 30 chr1 58416872 58416971 -138778461 + B1_Mur2 SINE Alu 33 134 -15 6 1030 1435 28 0 11 chr1 58416975 58417157 -138778275 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1030 263 272 0 80 chr1 58417321 58417409 -138778023 - B4A SINE B4 0 292 212 6 1030 497 276 86 86 chr1 58417441 58417639 -138777793 - B3A SINE B2 0 198 1 6 1030 412 155 24 12 chr1 58417709 58417794 -138777638 - URR1B DNA MER1_type 0 225 140 6 1030 325 118 20 0 chr1 58417777 58417828 -138777604 + ORR1C2 LTR MaLR 328 379 -5 7 1030 413 152 53 152 chr1 58417836 58417937 -138777495 - ORR1C1 LTR MaLR -284 110 20 7 1030 1110 68 14 0 chr1 58417937 58418083 -138777349 - B1_Mus1 SINE Alu 0 148 1 7 1030 413 146 57 163 chr1 58418083 58418114 -138777318 - ORR1C1 LTR MaLR -350 28 1 7 1030 284 209 292 26 chr1 58418272 58418285 -138777147 + ID_B1 SINE B4 80 222 -2 7 1030 448 240 20 0 chr1 58418285 58418385 -138777047 + PB1D10 SINE Alu 14 115 -2 7 1030 642 113 0 0 chr1 58418462 58418559 -138776873 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 7 1030 257 313 30 0 chr1 58418899 58418966 -138776466 - ID_B1 SINE B4 -14 210 142 7 1030 709 78 0 0 chr1 58419050 58419153 -138776279 + BC1_Mm scRNA scRNA 1 103 -49 7 1030 441 272 96 62 chr1 58419148 58419504 -138775928 - RMER10A LTR ERVL -74 368 1 7 1030 330 261 0 35 chr1 58419540 58419655 -138775777 + BC1_Mm scRNA scRNA 4 114 -38 7 1030 887 119 30 0 chr1 58419665 58419799 -138775633 + B1_Mur4 SINE Alu 1 138 -12 7 1030 237 174 43 0 chr1 58419923 58419969 -138775463 + B1F1 SINE Alu 86 133 -16 7 1030 274 82 32 32 chr1 58419972 58420035 -138775397 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 7 1030 237 33 0 0 chr1 58420077 58420107 -138775325 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 7 1030 297 281 87 77 chr1 58420134 58420298 -138775134 + B3A SINE B2 48 214 -2 7 1030 696 156 86 0 chr1 58420743 58420871 -138774561 - B1_Mur4 SINE Alu 0 150 12 7 1030 255 193 35 0 chr1 58421086 58421143 -138774289 - RSINE1 SINE B4 -36 129 71 7 1030 210 37 0 0 chr1 58421146 58421173 -138774259 + (C)n Simple_repeat Simple_repeat 1 27 0 7 1030 3735 136 16 39 chr1 58421348 58421991 -138773441 - RLTR5_Mm LTR ERV1 0 628 1 7 1030 1243 82 37 32 chr1 58422123 58422311 -138773121 - B2_Mm2 SINE B2 -6 189 1 7 1030 1135 82 0 0 chr1 58422328 58422475 -138772957 - B1_Mus1 SINE Alu -1 147 1 7 1030 246 62 0 0 chr1 58422513 58422545 -138772887 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1030 225 0 0 0 chr1 58422553 58422578 -138772854 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1030 292 291 51 0 chr1 58422583 58422662 -138772770 - RSINE1 SINE B4 -20 145 63 7 1030 1100 39 0 0 chr1 58423026 58423156 -138772276 + B1_Mus2 SINE Alu 2 131 -16 7 1030 560 198 28 0 chr1 58423254 58423360 -138772072 + B1_Mur3 SINE Alu 1 109 -40 7 1030 2974 72 22 59 chr1 58424541 58425029 -138770403 - RMER16 LTR ERVK 0 533 64 7 1030 32 0 0 0 chr1 58425290 58425322 -138770110 + AT_rich Low_complexity Low_complexity 1 32 0 7 1030 460 189 22 0 chr1 58425330 58425420 -138770012 + ID_B1 SINE B4 131 222 -2 7 1030 1761 197 104 7 chr1 58425720 58426135 -138769297 - RLTR40 LTR ERVK -237 580 126 7 1030 202 104 62 0 chr1 58426142 58426190 -138769242 + T-rich Low_complexity Low_complexity 3 53 0 7 1030 261 22 65 0 chr1 58426201 58426247 -138769185 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 7 1030 1198 62 0 0 chr1 58426248 58426394 -138769038 - B1_Mm SINE Alu 0 147 2 7 1030 500 193 18 0 chr1 58426400 58426509 -138768923 - RLTR40 LTR ERVK -706 111 1 7 1030 3486 25 2 2 chr1 58426833 58427229 -138768203 - MTA_Mm LTR MaLR 0 396 1 7 1030 384 293 51 8 chr1 58427403 58427520 -138767912 - MER77 LTR ERVL -485 122 1 7 1030 207 69 0 0 chr1 58428524 58428553 -138766879 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 7 1030 229 69 0 0 chr1 58428556 58428585 -138766847 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1030 1049 77 42 7 chr1 58428587 58428730 -138766702 - B1_Mus1 SINE Alu 0 148 1 7 1030 702 222 0 0 chr1 58428738 58428900 -138766532 + CT-rich Low_complexity Low_complexity 4 165 0 7 1030 253 129 367 51 chr1 58428901 58428999 -138766433 - B2_Mm2 SINE B2 0 195 67 7 1030 1353 80 11 0 chr1 58429175 58429351 -138766081 - B2_Mm1t SINE B2 -13 180 3 7 1030 892 176 14 0 chr1 58429359 58429507 -138765925 - B1_Mur4 SINE Alu 0 150 1 7 1030 519 31 0 0 chr1 58429877 58429942 -138765490 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 7 1030 28 48 0 0 chr1 58430105 58430147 -138765285 + AT_rich Low_complexity Low_complexity 1 42 0 7 1030 568 240 50 0 chr1 58430156 58430277 -138765155 - RSINE1 SINE B4 -37 128 2 7 1030 458 235 13 120 chr1 58430287 58430437 -138764995 - B1F1 SINE Alu -7 142 9 7 1030 919 154 0 32 chr1 58430710 58430864 -138764568 - B1_Mur2 SINE Alu 0 149 1 7 1030 3099 81 2 8 chr1 58432130 58432530 -138762902 - MTB LTR MaLR 0 400 3 7 1030 506 216 0 35 chr1 58432867 58432982 -138762450 + B1_Mur4 SINE Alu 27 137 -13 7 1030 891 35 0 0 chr1 58433659 58433772 -138761660 + B1_Mus1 SINE Alu 36 148 0 7 1030 388 288 128 0 chr1 58433823 58433948 -138761484 + B4A SINE B4 1 141 -151 7 1030 425 165 24 0 chr1 58434021 58434106 -138761326 - PB1D9 SINE Alu 0 120 34 7 1030 558 29 0 0 chr1 58434164 58434232 -138761200 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1030 440 244 113 8 chr1 58434245 58434369 -138761063 + ID_B1 SINE B4 88 224 0 7 1030 851 99 15 0 chr1 58434772 58434903 -138760529 + (GAAA)n Simple_repeat Simple_repeat 1 133 0 7 1030 385 281 53 0 chr1 58435029 58435143 -138760289 + ID_B1 SINE B4 103 222 -2 7 1030 306 200 0 15 chr1 58435351 58435417 -138760015 - PB1D10 SINE Alu -5 112 48 7 1030 410 223 1 0 chr1 58437102 58437189 -138758243 + B1_Mur1 SINE Alu 59 148 -1 7 1030 765 85 0 0 chr1 58437184 58437290 -138758142 + B1_Mus2 SINE Alu 41 146 -1 7 1030 228 67 0 0 chr1 58437292 58437322 -138758110 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1030 682 257 0 0 chr1 58437574 58437718 -138757714 - B3 SINE B2 -25 191 48 7 1030 216 0 0 0 chr1 58437718 58437742 -138757690 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1030 597 174 43 0 chr1 58437742 58437857 -138757575 - PB1D9 SINE Alu 0 120 1 7 1030 313 194 32 0 chr1 58437859 58437921 -138757511 - B3A SINE B2 -134 64 1 7 1030 488 265 50 25 chr1 58438041 58438200 -138757232 + RSINE1 SINE B4 3 165 0 7 1030 195 42 0 0 chr1 58438241 58438265 -138757167 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 1030 585 227 17 0 chr1 58438272 58438391 -138757041 - B1_Mus1 SINE Alu -18 130 10 7 1030 425 307 9 0 chr1 58438525 58438639 -138756793 - PB1D10 SINE Alu -2 115 1 7 1030 805 256 34 5 chr1 58438672 58438876 -138756556 - ID_B1 SINE B4 -12 212 3 7 1030 690 252 70 49 chr1 58439785 58440105 -138755327 - MLT1C LTR MaLR -68 322 42 7 1030 1927 162 22 3 chr1 58440175 58440546 -138754886 + L1_Mur3 LINE L1 3151 3528 -2352 7 1030 417 228 0 10 chr1 58440539 58440641 -138754791 + Lx7 LINE L1 7393 7493 -203 7 1030 25 115 0 0 chr1 58440696 58440826 -138754606 + AT_rich Low_complexity Low_complexity 1 130 0 7 1030 22 56 0 0 chr1 58440953 58440989 -138754443 + AT_rich Low_complexity Low_complexity 1 36 0 7 1030 1418 51 79 0 chr1 58440991 58441151 -138754281 + B2_Mm1t SINE B2 1 160 -33 7 1030 315 0 0 0 chr1 58441151 58441186 -138754246 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 1030 1418 51 79 0 chr1 58441186 58441203 -138754229 + B2_Mm1t SINE B2 161 190 -3 7 1030 1171 57 0 0 chr1 58441353 58441494 -138753938 + B1_Mus1 SINE Alu 1 141 -7 7 1030 24 32 0 0 chr1 58441506 58441537 -138753895 + AT_rich Low_complexity Low_complexity 1 31 0 7 1030 9882 69 12 26 chr1 58441661 58442857 -138752575 - L1VL2 LINE L1 -1304 2311 1124 7 1030 1118 82 7 0 chr1 58442857 58443003 -138752429 - B1_Mm SINE Alu 0 147 1 7 1030 9882 70 16 9 chr1 58443003 58443683 -138751749 - L1VL2 LINE L1 -2492 1123 447 7 1030 557 218 97 0 chr1 58443911 58444035 -138751397 + B1_Mur2 SINE Alu 1 136 -13 7 1030 790 241 15 34 chr1 58444084 58444290 -138751142 + ID_B1 SINE B4 2 203 -21 7 1030 553 135 234 0 chr1 58444378 58444489 -138750943 + URR1B DNA MER1_type 89 225 0 7 1030 506 132 0 99 chr1 58444581 58444682 -138750750 - BC1_Mm scRNA scRNA -61 91 1 7 1030 912 79 43 0 chr1 58444887 58445026 -138750406 + B1_Mur4 SINE Alu 6 150 0 7 1030 391 214 12 12 chr1 58445281 58445366 -138750066 - ID SINE ID -139 85 1 7 1030 370 310 19 39 chr1 58445434 58445538 -138749894 + RSINE1 SINE B4 64 165 0 7 1030 27 0 0 0 chr1 58445854 58445881 -138749551 + AT_rich Low_complexity Low_complexity 1 27 0 7 1030 474 203 27 20 chr1 58445893 58446009 -138749423 + B1F1 SINE Alu 3 124 -3 7 1030 814 195 0 13 chr1 58446369 58446520 -138748912 - B1_Mur2 SINE Alu 0 149 1 7 1030 882 215 47 5 chr1 58446715 58446907 -138748525 + B3 SINE B2 6 205 -11 7 1030 295 291 24 37 chr1 58447130 58447212 -138748220 + ID SINE ID 8 88 -136 7 1030 552 30 0 0 chr1 58447219 58447285 -138748147 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1030 265 276 132 0 chr1 58447292 58447368 -138748064 - B1_Mus2 SINE Alu -19 98 13 7 1030 1423 82 0 10 chr1 58447369 58447565 -138747867 + B2_Mm2 SINE B2 2 195 0 7 1030 1596 31 0 40 chr1 58447574 58447774 -138747658 + B2_Mm1a SINE B2 2 193 0 7 1030 455 306 60 22 chr1 58447789 58447973 -138747459 - B4A SINE B4 -99 193 3 7 1030 640 198 0 0 chr1 58448191 58448307 -138747125 + PB1D10 SINE Alu 1 116 -1 7 1030 325 98 0 0 chr1 58449108 58449159 -138746273 - B1_Mus2 SINE Alu -31 116 66 7 1030 423 52 0 0 chr1 58449168 58449226 -138746206 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1030 312 255 61 10 chr1 58449361 58449460 -138745972 + MER5A DNA MER1_type 50 153 -36 7 1030 200 262 29 10 chr1 58450058 58450162 -138745270 + (CGCGG)n Simple_repeat Simple_repeat 3 108 0 8 1030 34 65 0 0 chr1 58450193 58450255 -138745177 + GC_rich Low_complexity Low_complexity 1 62 0 8 1030 243 133 0 0 chr1 58450319 58450364 -138745068 + (CCG)n Simple_repeat Simple_repeat 3 47 0 8 1030 25 0 0 0 chr1 58450389 58450414 -138745018 + GC_rich Low_complexity Low_complexity 1 25 0 8 1030 246 62 0 0 chr1 58451292 58451324 -138744108 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 8 1030 21 0 0 0 chr1 58451548 58451569 -138743863 + AT_rich Low_complexity Low_complexity 1 21 0 8 1030 343 154 0 4 chr1 58451670 58451745 -138743687 + B1_Mus2 SINE Alu 46 146 -1 8 1030 915 85 40 72 chr1 58451759 58451911 -138743521 - B1_Mus1 SINE Alu 0 148 2 8 1030 381 214 256 0 chr1 58451954 58452071 -138743361 + B1_Mur1 SINE Alu 2 148 -1 8 1030 1165 128 55 6 chr1 58452301 58452482 -138742950 + B2_Mm2 SINE B2 1 190 -5 8 1030 219 274 41 38 chr1 58452591 58452682 -138742750 + B1F1 SINE Alu 12 104 -13 8 1030 272 263 92 0 chr1 58452741 58452817 -138742615 - MER81 DNA AcHobo -10 104 22 8 1030 494 244 8 12 chr1 58453132 58453265 -138742167 + B3A SINE B2 34 162 -54 8 1030 623 194 32 0 chr1 58453341 58453465 -138741967 - B1_Mur2 SINE Alu 0 149 22 8 1030 674 161 177 0 chr1 58453569 58453693 -138741739 + B1_Mus1 SINE Alu 3 148 0 8 1030 239 194 29 101 chr1 58453803 58453872 -138741560 + PB1D10 SINE Alu 54 117 0 8 1030 333 161 65 0 chr1 58453873 58453935 -138741497 + B4 SINE B4 2 67 -225 8 1030 336 266 83 0 chr1 58454120 58454229 -138741203 - PB1D9 SINE Alu 0 120 3 8 1030 707 185 225 0 chr1 58454953 58455126 -138740306 - B3 SINE B2 -4 212 1 8 1030 336 81 365 0 chr1 58455231 58455305 -138740127 - B2_Mm2 SINE B2 -93 102 2 8 1030 256 224 12 95 chr1 58455309 58455393 -138740039 - PB1D10 SINE Alu 0 117 41 8 1030 259 254 17 0 chr1 58455472 58455531 -138739901 + PB1D10 SINE Alu 55 114 -3 8 1030 426 290 30 8 chr1 58456218 58456350 -138739082 + ID_B1 SINE B4 77 211 -13 8 1030 325 284 96 19 chr1 58456377 58456481 -138738951 + PB1D7 SINE Alu 1 112 -8 8 1030 261 200 104 26 chr1 58456568 58456645 -138738787 - B1F SINE Alu -35 114 32 8 1030 200 279 152 0 chr1 58457359 58457438 -138737994 - MIRc SINE MIR -102 166 76 8 1031 332 194 311 80 chr1 58458395 58458546 -138736886 - B3A SINE B2 -30 186 1 8 1031 325 160 13 0 chr1 58458590 58458654 -138736778 - B2_Mm2 SINE B2 -83 115 46 8 1031 1255 76 53 6 chr1 58458699 58458870 -138736562 - B2_Mm1t SINE B2 -14 179 1 8 1031 1248 41 0 0 chr1 58458973 58459120 -138736312 + B1_Mm SINE Alu 1 147 0 8 1031 385 264 47 9 chr1 58459531 58459638 -138735794 - PB1D9 SINE Alu -9 111 1 8 1031 809 115 335 12 chr1 58459942 58460109 -138735323 + URR1B DNA MER1_type 5 225 0 8 1031 292 246 108 31 chr1 58460732 58460862 -138734570 - B1_Mur1 SINE Alu -7 142 3 8 1031 1397 52 35 0 chr1 58461365 58461539 -138733893 - B2_Mm2 SINE B2 -15 180 1 8 1031 21 0 0 0 chr1 58463359 58463380 -138732052 + AT_rich Low_complexity Low_complexity 1 21 0 8 1031 256 133 371 26 chr1 58464111 58464227 -138731205 - MER106B DNA MER1_type 0 1059 904 8 1031 890 47 158 0 chr1 58464253 58464380 -138731052 - B1_Mm SINE Alu 0 147 1 8 1031 252 251 38 66 chr1 58464481 58464591 -138730841 - PB1 SINE Alu -8 141 17 8 1031 240 247 133 51 chr1 58464742 58464840 -138730592 - PB1D9 SINE Alu -13 107 2 8 1031 365 234 201 95 chr1 58464995 58465036 -138730396 - ORR1D1 LTR MaLR -27 347 315 8 1031 1023 59 74 0 chr1 58465036 58465171 -138730261 + B1_Mus2 SINE Alu 1 145 -2 8 1031 365 234 201 95 chr1 58465171 58465403 -138730029 - ORR1D1 LTR MaLR -60 314 45 8 1031 275 219 116 47 chr1 58465650 58465736 -138729696 + PB1D9 SINE Alu 1 92 -28 8 1031 931 74 22 0 chr1 58466301 58466436 -138728996 + B2_Mm2 SINE B2 2 139 -56 8 1031 403 252 84 0 chr1 58466561 58466668 -138728764 - RSINE1 SINE B4 -44 121 6 8 1031 1103 76 14 0 chr1 58466685 58466829 -138728603 - B1_Mus2 SINE Alu 0 147 2 8 1031 321 294 111 60 chr1 58467134 58467217 -138728215 - B4A SINE B4 0 292 87 8 1031 440 255 0 62 chr1 58467217 58467330 -138728102 - PB1D10 SINE Alu -10 107 2 8 1031 276 119 95 11 chr1 58467638 58467727 -138727705 - B1_Mus1 SINE Alu -21 129 36 8 1031 241 398 29 0 chr1 58468135 58468238 -138727194 - RSINE1 SINE B4 -29 136 31 8 1031 280 160 0 39 chr1 58468668 58468720 -138726712 + B3 SINE B2 27 76 -140 8 1031 21 0 0 0 chr1 58469712 58469733 -138725699 + AT_rich Low_complexity Low_complexity 1 21 0 8 1031 456 189 179 0 chr1 58470734 58470829 -138724603 - PB1D9 SINE Alu -7 113 2 8 1031 215 94 0 0 chr1 58470895 58470927 -138724505 - ID4 SINE ID -44 39 8 8 1031 1100 97 0 0 chr1 58470978 58471122 -138724310 + B1_Mus1 SINE Alu 1 144 -4 8 1031 216 215 61 15 chr1 58471677 58471743 -138723689 - B1_Mur4 SINE Alu -7 143 75 8 1031 355 277 91 48 chr1 58471802 58471988 -138723444 + B3 SINE B2 2 195 0 8 1031 806 87 24 0 chr1 58472482 58472608 -138722824 + B2_Mm2 SINE B2 67 195 0 8 1031 788 181 88 24 chr1 58472778 58472948 -138722484 + B2_Mm2 SINE B2 1 181 -14 8 1031 325 288 67 8 chr1 58472996 58473115 -138722317 - ID_B1 SINE B4 -95 129 4 8 1031 1029 105 92 12 chr1 58473125 58473298 -138722134 - B2_Mm2 SINE B2 -7 188 2 8 1031 359 197 28 32 chr1 58473478 58473591 -138721841 - B1_Mus1 SINE Alu 0 120 5 8 1031 1160 82 0 0 chr1 58474268 58474415 -138721017 + B1_Mus1 SINE Alu 2 148 0 8 1031 269 45 0 62 chr1 58474415 58474463 -138720969 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1031 677 97 145 13 chr1 58474478 58474632 -138720800 - B2_Mm2 SINE B2 -2 191 1 8 1031 1068 82 14 0 chr1 58475277 58475423 -138720009 + B1_Mus1 SINE Alu 1 148 0 8 1031 338 261 181 42 chr1 58475600 58475744 -138719688 + B3A SINE B2 32 195 -3 8 1031 1235 48 0 0 chr1 58475887 58476034 -138719398 + B1_Mus2 SINE Alu 1 147 0 8 1031 551 49 25 0 chr1 58476152 58476233 -138719199 + B1_Mur4 SINE Alu 68 150 0 8 1031 384 240 120 0 chr1 58476260 58476360 -138719072 + PB1D9 SINE Alu 2 113 -7 8 1031 461 190 32 72 chr1 58476361 58476486 -138718946 + B1_Mus2 SINE Alu 28 147 0 8 1031 213 178 0 0 chr1 58476831 58476876 -138718556 + A-rich Low_complexity Low_complexity 1 45 0 8 1031 23 54 0 0 chr1 58477460 58477497 -138717935 + AT_rich Low_complexity Low_complexity 1 37 0 8 1031 228 278 19 0 chr1 58478321 58478375 -138717057 - ID SINE ID -165 59 5 8 1031 207 0 0 0 chr1 58478433 58478456 -138716976 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1031 419 164 156 47 chr1 58478472 58478600 -138716832 - B3A SINE B2 -55 143 2 8 1031 352 218 22 22 chr1 58478902 58478991 -138716441 - B1_Mur2 SINE Alu -51 98 10 8 1031 1207 68 0 0 chr1 58479116 58479262 -138716170 - B1_Mus2 SINE Alu 0 147 2 8 1031 1069 87 0 0 chr1 58479473 58479611 -138715821 + B1_Mm SINE Alu 1 138 -9 8 1031 234 0 0 0 chr1 58479692 58479718 -138715714 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1031 1112 38 0 29 chr1 58481233 58481370 -138714062 + B1_Mm SINE Alu 5 137 -10 8 1031 186 71 0 0 chr1 58481370 58481398 -138714034 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 8 1031 2083 119 176 11 chr1 58481491 58481712 -138713720 + RLTR9B2 LTR ERVK 2 283 -137 8 1031 1144 43 7 0 chr1 58481712 58481850 -138713582 - B1_Mus2 SINE Alu -8 139 1 8 1031 2083 119 176 11 chr1 58481850 58481985 -138713447 + RLTR9B2 LTR ERVK 284 417 -3 8 1031 373 239 147 2 chr1 58482104 58482217 -138713215 + B1_Mur2 SINE Alu 3 128 -21 8 1031 407 248 59 10 chr1 58482223 58482325 -138713107 + RSINE1 SINE B4 2 108 -57 8 1031 36 40 0 0 chr1 58482338 58482388 -138713044 + AT_rich Low_complexity Low_complexity 1 50 0 8 1031 715 200 146 36 chr1 58482388 58482429 -138713003 - B3 SINE B2 -3 213 177 8 1031 3056 126 61 4 chr1 58482429 58482593 -138712839 - RLTR19 LTR ERVK 0 499 321 8 1031 351 0 0 0 chr1 58482593 58482632 -138712800 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1031 3056 126 61 4 chr1 58482632 58482939 -138712493 - RLTR19 LTR ERVK -179 320 1 8 1031 715 200 146 36 chr1 58482939 58483089 -138712343 - B3 SINE B2 -40 176 1 8 1031 1820 112 0 62 chr1 58483115 58483420 -138712012 + MT2B2 LTR ERVL 1 286 -298 8 1031 4399 123 22 1 chr1 58483381 58484144 -138711288 + ORR1A3-int LTR MaLR 719 1497 -466 8 1031 815 201 6 6 chr1 58484190 58484350 -138711082 + RLTR41 LTR ERV1 141 300 -146 8 1031 309 109 0 0 chr1 58484930 58484976 -138710456 + (CAAAC)n Simple_repeat Simple_repeat 3 48 0 8 1031 244 224 28 8 chr1 58485122 58485187 -138710245 - PB1D9 SINE Alu -82 67 2 8 1031 288 284 111 53 chr1 58485560 58485731 -138709701 - MER58A DNA MER1_type -37 187 7 8 1031 606 174 41 16 chr1 58485741 58485864 -138709568 - B1_Mm SINE Alu 0 147 22 8 1031 1565 43 32 0 chr1 58486646 58486833 -138708599 - B2_Mm2 SINE B2 -2 193 1 8 1031 406 208 167 19 chr1 58486899 58487007 -138708425 - B1_Mur1 SINE Alu -21 128 5 8 1031 589 182 71 0 chr1 58487368 58487494 -138707938 - B1_Mur4 SINE Alu -5 145 11 8 1031 1329 97 5 11 chr1 58487638 58487826 -138707606 + B2_Mm1t SINE B2 2 188 -5 8 1031 353 182 159 0 chr1 58488626 58488714 -138706718 + B4A SINE B4 105 206 -86 9 1031 1189 68 0 0 chr1 58488859 58489005 -138706427 - B1_Mus2 SINE Alu 0 147 2 9 1031 234 91 0 0 chr1 58489190 58489223 -138706209 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1031 1105 193 14 19 chr1 58489322 58489533 -138705899 - B3 SINE B2 -3 213 4 9 1031 673 186 20 46 chr1 58489634 58489786 -138705646 + B1_Mur1 SINE Alu 1 148 -1 9 1031 21 0 0 0 chr1 58489945 58489966 -138705466 + AT_rich Low_complexity Low_complexity 1 21 0 9 1031 780 198 147 0 chr1 58490088 58490265 -138705167 + B3 SINE B2 5 207 -9 9 1031 301 223 61 22 chr1 58490496 58490614 -138704818 + B1F SINE Alu 1 116 -1 9 1031 216 231 0 0 chr1 58490973 58491025 -138704407 + GA-rich Low_complexity Low_complexity 3 54 0 9 1031 1672 36 0 0 chr1 58491579 58491772 -138703660 - B2_Mm1a SINE B2 0 193 1 9 1031 180 238 48 0 chr1 58491864 58491906 -138703526 + MIR3 SINE MIR 114 157 -51 9 1031 1394 83 15 15 chr1 58492014 58492209 -138703223 - B2_Mm2 SINE B2 0 195 1 9 1031 1276 67 66 22 chr1 58492250 58492433 -138702999 + B2_Mm1a SINE B2 2 192 -1 9 1031 342 271 90 14 chr1 58492772 58492874 -138702558 + PB1D10 SINE Alu 4 93 -24 9 1031 560 298 29 40 chr1 58493036 58493211 -138702221 - ID_B1 SINE B4 -47 177 5 9 1031 299 25 25 0 chr1 58493263 58493303 -138702129 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 9 1031 1259 38 0 0 chr1 58493303 58493463 -138701969 - B2_Mm1a SINE B2 -33 160 1 9 1031 714 197 23 0 chr1 58493533 58493665 -138701767 + B1_Mus2 SINE Alu 13 147 0 9 1031 952 196 27 46 chr1 58493680 58493899 -138701533 - B3 SINE B2 0 216 2 9 1031 936 96 208 13 chr1 58493924 58494083 -138701349 - B2_Mm2 SINE B2 -5 190 1 9 1031 403 260 116 85 chr1 58494184 58494373 -138701059 + B3A SINE B2 1 195 -3 9 1031 417 205 26 2 chr1 58494470 58494581 -138700851 + PB1D9 SINE Alu 3 117 -32 9 1031 1355 86 21 0 chr1 58494645 58494832 -138700600 - B2_Mm2 SINE B2 -4 191 1 9 1031 696 203 0 0 chr1 58494999 58495117 -138700315 - B1_Mur2 SINE Alu -31 118 1 9 1031 964 71 0 0 chr1 58495369 58495496 -138699936 - B1_Mus1 SINE Alu -8 140 14 9 1031 226 119 24 0 chr1 58495494 58495536 -138699896 - ID4 SINE ID -39 44 2 9 1031 244 203 33 33 chr1 58495596 58495657 -138699775 - ID SINE ID -160 64 4 9 1031 254 329 118 0 chr1 58495680 58495765 -138699667 - PB1D10 SINE Alu -5 122 28 9 1031 198 0 0 0 chr1 58495882 58495904 -138699528 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1031 433 270 0 29 chr1 58495947 58496050 -138699382 + PB1D10 SINE Alu 7 106 -11 9 1031 229 216 12 139 chr1 58496050 58496136 -138699296 + 4.5SRNA scRNA scRNA 12 86 -8 9 1031 609 144 0 35 chr1 58496082 58496197 -138699235 + B1_Mur4 SINE Alu 40 150 0 9 1031 742 223 108 14 chr1 58496226 58496449 -138698983 + Lx9 LINE L1 7239 7482 -162 9 1031 1512 149 71 160 chr1 58496450 58496572 -138698860 - MTC LTR MaLR 0 421 308 9 1031 987 153 0 0 chr1 58496572 58496722 -138698710 + B1_Mur4 SINE Alu 1 150 0 9 1031 1512 149 71 160 chr1 58496722 58497020 -138698412 - MTC LTR MaLR -114 307 34 9 1031 1208 188 32 0 chr1 58497020 58497238 -138698194 - URR1B DNA MER1_type 0 225 1 9 1031 1512 149 71 160 chr1 58497238 58497278 -138698154 - MTC LTR MaLR -388 33 1 9 1031 427 244 0 30 chr1 58497278 58497409 -138698023 + Lx9 LINE L1 7491 7617 -27 9 1031 211 247 98 12 chr1 58498041 58498123 -138697309 + L2c LINE L2 3298 3386 -1 9 1031 765 261 72 24 chr1 58498362 58498570 -138696862 - B4A SINE B4 -74 218 1 9 1031 23 0 0 0 chr1 58498649 58498672 -138696760 + AT_rich Low_complexity Low_complexity 1 23 0 9 1031 2898 128 23 6 chr1 58498684 58499164 -138696268 + RLTR12B LTR ERVK 21 508 -20 9 1031 778 139 14 14 chr1 58499194 58499333 -138696099 - B1_Mur1 SINE Alu 0 149 11 9 1031 294 304 52 35 chr1 58499239 58499355 -138696077 - B4A SINE B4 -98 194 77 9 1031 3838 34 0 2 chr1 58500166 58500615 -138694817 - L1Md_F3 LINE L1 0 6584 6137 1 1031 21 36 0 0 chr1 58501030 58501058 -138694374 + AT_rich Low_complexity Low_complexity 1 28 0 2 1031 1116 89 0 0 chr1 58501059 58501205 -138694227 + B1_Mus2 SINE Alu 1 146 -1 3 1031 333 0 0 0 chr1 58501205 58501242 -138694190 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1031 351 215 147 18 chr1 58501264 58501373 -138694059 + B3A SINE B2 3 125 -73 5 1031 4024 118 97 34 chr1 58502986 58503697 -138691735 + RMER6A LTR ERVK 1 756 0 6 1031 307 204 227 0 chr1 58503970 58504058 -138691374 - B1F1 SINE Alu -39 110 3 7 1031 514 195 119 0 chr1 58504058 58504127 -138691305 - ID SINE ID -141 83 1 8 1031 23 0 0 0 chr1 58505043 58505066 -138690366 + AT_rich Low_complexity Low_complexity 1 23 0 9 1031 1007 213 39 0 chr1 58505112 58505319 -138690113 - B3 SINE B2 0 216 2 1 1031 527 183 272 23 chr1 58505351 58505524 -138689908 + B3 SINE B2 1 216 0 1 1031 240 143 0 0 chr1 58505719 58505761 -138689671 - ID_B1 SINE B4 -9 215 174 1 1031 1332 208 178 11 chr1 58505771 58506130 -138689302 - MTD LTR MaLR 0 419 1 1 1031 272 339 66 8 chr1 58506342 58506464 -138688968 - RSINE1 SINE B4 -35 130 2 1 1031 288 0 0 0 chr1 58506671 58506703 -138688729 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1031 693 181 8 8 chr1 58506710 58506838 -138688594 - B1_Mur1 SINE Alu -20 129 2 1 1031 292 280 0 163 chr1 58506838 58506873 -138688559 - MT2B LTR ERVL -447 154 143 1 1031 192 77 0 0 chr1 58507426 58507452 -138687980 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1031 385 318 100 13 chr1 58507456 58507606 -138687826 - RSINE1 SINE B4 0 165 3 1 1031 223 222 192 48 chr1 58507621 58507635 -138687797 - PB1D7 SINE Alu -1 119 109 2 1031 189 0 0 0 chr1 58507635 58507656 -138687776 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 1031 223 222 192 48 chr1 58507656 58507745 -138687687 - PB1D7 SINE Alu -12 108 1 2 1031 327 218 135 29 chr1 58507760 58507864 -138687568 - B3 SINE B2 -5 211 97 2 1031 567 282 6 82 chr1 58508254 58508424 -138687008 + RSINE1 SINE B4 9 165 0 2 1031 22 56 0 0 chr1 58508425 58508461 -138686971 + AT_rich Low_complexity Low_complexity 1 36 0 2 1031 450 292 9 0 chr1 58508497 58508610 -138686822 - PB1D10 SINE Alu -3 114 1 2 1031 579 213 8 16 chr1 58508691 58508815 -138686617 - B1_Mur2 SINE Alu 0 149 27 2 1031 569 50 208 0 chr1 58508789 58508890 -138686542 - B1_Mus2 SINE Alu -24 123 2 2 1031 2197 65 65 95 chr1 58509187 58509244 -138686188 - ORR1A2 LTR MaLR 0 327 285 2 1031 1149 54 0 13 chr1 58509244 58509393 -138686039 - B1_Mus1 SINE Alu 0 148 2 2 1031 2197 65 65 95 chr1 58509393 58509409 -138686023 - ORR1A2 LTR MaLR -43 284 284 3 1031 1694 21 11 0 chr1 58509409 58509600 -138685832 - B2_Mm1a SINE B2 0 193 1 3 1031 2197 65 65 95 chr1 58509600 58509862 -138685570 - ORR1A2 LTR MaLR -43 284 1 2 1031 337 276 0 13 chr1 58509894 58509971 -138685461 + RSINE1 SINE B4 3 78 -87 3 1031 2969 62 43 5 chr1 58510033 58510425 -138685007 - MTB_Mm LTR MaLR 0 407 1 3 1031 939 153 71 5 chr1 58510524 58510704 -138684728 - ORR1D1 LTR MaLR -174 200 9 3 1031 1889 190 19 5 chr1 58510704 58511080 -138684352 - ORR1D1-int LTR MaLR -2 1368 988 3 1031 1495 191 129 3 chr1 58511400 58511788 -138683644 - ORR1D1-int LTR MaLR -772 598 162 3 1031 315 50 0 0 chr1 58511965 58512005 -138683427 - HAL1-3A_ME LINE L1 -842 2016 1977 3 1031 875 169 57 34 chr1 58512010 58512187 -138683245 - B3A SINE B2 -17 181 1 3 1031 301 284 31 21 chr1 58512632 58512729 -138682703 - PB1D10 SINE Alu 0 117 20 3 1031 220 100 0 57 chr1 58512734 58512752 -138682680 + (TTTG)n Simple_repeat Simple_repeat 3 19 0 3 1031 1664 26 0 20 chr1 58512752 58512948 -138682484 - B2_Mm1a SINE B2 0 193 2 3 1031 220 100 0 57 chr1 58512948 58512982 -138682450 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1031 1263 27 0 0 chr1 58512983 58513129 -138682303 - B1_Mm SINE Alu 0 147 2 4 1031 1212 74 79 6 chr1 58513366 58513527 -138681905 + B2_Mm1a SINE B2 1 175 -18 4 1031 186 43 0 0 chr1 58513527 58513550 -138681882 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1031 1212 74 79 6 chr1 58513550 58513565 -138681867 + B2_Mm1a SINE B2 176 190 -3 4 1031 241 154 90 30 chr1 58513607 58513674 -138681758 + B1_Mur1 SINE Alu 79 149 0 4 1031 434 159 103 34 chr1 58513753 58513870 -138681562 - B3A SINE B2 -72 126 2 4 1031 237 324 15 0 chr1 58514122 58514190 -138681242 + ID_B1 SINE B4 82 150 -74 4 1031 853 131 51 0 chr1 58514350 58514487 -138680945 - B1_Mur2 SINE Alu -1 148 5 4 1031 486 224 39 77 chr1 58515090 58515245 -138680187 - RLTR16 LTR ERVK -325 180 32 4 1031 294 272 25 0 chr1 58515348 58515429 -138680003 - ID4_ SINE ID 0 83 1 4 1031 713 146 55 55 chr1 58515509 58515654 -138679778 - B1_Mur1 SINE Alu 0 149 5 5 1031 780 248 68 9 chr1 58515775 58515995 -138679437 + B4A SINE B4 1 233 -59 5 1031 1162 103 69 0 chr1 58516235 58516409 -138679023 - B2_Mm1a SINE B2 -7 186 1 5 1031 701 182 51 7 chr1 58516539 58516677 -138678755 + B1_Mus2 SINE Alu 4 147 0 5 1031 1131 75 7 0 chr1 58516893 58517039 -138678393 + B1_Mus1 SINE Alu 2 148 0 5 1031 517 117 214 9 chr1 58517100 58517212 -138678220 - B1_Mus1 SINE Alu 0 148 14 5 1031 225 147 195 26 chr1 58517143 58517220 -138678212 - MT2B LTR ERVL -345 256 167 5 1031 393 286 8 23 chr1 58517261 58517390 -138678042 - ID_B1 SINE B4 -6 218 92 5 1031 217 282 224 0 chr1 58517592 58517677 -138677755 + RSINE1 SINE B4 39 142 -23 5 1031 1098 81 156 0 chr1 58518957 58519117 -138676315 + B2_Mm2 SINE B2 3 187 -8 5 1031 624 212 233 17 chr1 58519766 58520006 -138675426 + B4A SINE B4 1 292 0 6 1031 429 282 81 0 chr1 58520071 58520195 -138675237 - B1F SINE Alu -1 148 15 6 1031 364 111 0 0 chr1 58520221 58520275 -138675157 - B1_Mus2 SINE Alu -83 64 11 6 1031 261 232 0 55 chr1 58520275 58520294 -138675138 - B4A SINE B4 -143 149 81 6 1031 24 32 0 0 chr1 58521227 58521258 -138674174 + AT_rich Low_complexity Low_complexity 1 31 0 6 1031 751 178 22 7 chr1 58521276 58521412 -138674020 - B1_Mus1 SINE Alu -6 142 5 6 1031 457 106 11 66 chr1 58521423 58521514 -138673918 - B1_Mus2 SINE Alu 0 147 62 6 1031 385 216 30 40 chr1 58521628 58521729 -138673703 - PB1D9 SINE Alu -8 112 13 6 1031 868 224 65 25 chr1 58521794 58521995 -138673437 + B3 SINE B2 1 209 -7 6 1031 186 103 0 0 chr1 58523005 58523034 -138672398 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1031 2712 41 6 0 chr1 58523038 58523358 -138672074 - L1_Mus1 LINE L1 -1 6566 6245 7 1031 885 56 0 0 chr1 58523358 58523465 -138671967 - U6 snRNA snRNA 0 107 1 7 1031 1388 81 16 0 chr1 58523468 58523654 -138671778 - B2_Mm2 SINE B2 -6 189 1 7 1031 1376 136 43 65 chr1 58523666 58523942 -138671490 - Lx4A LINE L1 -7 7051 6782 7 1031 1117 56 28 0 chr1 58523988 58524131 -138671301 + B1_Mus2 SINE Alu 1 147 0 7 1031 224 200 18 0 chr1 58524717 58524772 -138670660 + CT-rich Low_complexity Low_complexity 2 57 0 7 1031 475 281 7 21 chr1 58524877 58525019 -138670413 + B1_Mur2 SINE Alu 2 141 -8 7 1031 329 167 120 0 chr1 58525205 58525305 -138670127 - B3 SINE B2 -92 124 13 7 1031 1056 50 0 0 chr1 58525313 58525452 -138669980 + B1_Mm SINE Alu 9 147 0 7 1031 183 114 0 0 chr1 58525454 58525489 -138669943 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1031 1217 48 0 0 chr1 58525676 58525823 -138669609 - B1_Mus2 SINE Alu 0 147 1 8 1031 1195 250 91 16 chr1 58525840 58526214 -138669218 + MTD LTR MaLR 18 419 0 8 1031 236 300 25 0 chr1 58526266 58526346 -138669086 - ID4_ SINE ID -1 82 1 8 1031 227 320 13 0 chr1 58526366 58526444 -138668988 - ID4 SINE ID 0 83 5 8 1031 468 196 39 19 chr1 58526961 58527064 -138668368 - PB1D7 SINE Alu 0 120 11 8 1031 362 197 224 0 chr1 58527142 58527218 -138668214 + B1_Mur2 SINE Alu 1 93 -56 8 1031 418 279 210 50 chr1 58527248 58527311 -138668121 + B3 SINE B2 1 67 -149 8 1031 1203 41 0 13 chr1 58527311 58527460 -138667972 - B1_Mm SINE Alu 0 147 1 8 1031 418 279 210 50 chr1 58527460 58527577 -138667855 + B3 SINE B2 68 210 -6 8 1031 1080 59 84 158 chr1 58528059 58528099 -138667333 + B2_Mm2 SINE B2 2 41 -154 8 1031 1634 47 0 0 chr1 58528099 58528291 -138667141 + B2_Mm1a SINE B2 2 193 0 8 1031 1080 59 84 158 chr1 58528291 58528452 -138666980 + B2_Mm2 SINE B2 42 188 -7 8 1031 681 254 40 113 chr1 58528468 58528770 -138666662 + B4A SINE B4 1 280 -12 9 1031 22 35 0 0 chr1 58529316 58529345 -138666087 + AT_rich Low_complexity Low_complexity 1 29 0 9 1031 924 155 71 16 chr1 58529394 58529578 -138665854 + B2_Mm2 SINE B2 2 195 0 9 1031 290 191 43 106 chr1 58529826 58529920 -138665512 + MT2B LTR ERVL 151 238 -363 9 1031 635 130 130 0 chr1 58529858 58529981 -138665451 + B1_Mm SINE Alu 9 147 0 9 1031 643 208 69 0 chr1 58530006 58530136 -138665296 + B1_Mur3 SINE Alu 1 139 -10 9 1031 342 0 0 0 chr1 58530154 58530192 -138665240 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1031 192 40 0 0 chr1 58530216 58530241 -138665191 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1031 1530 155 156 46 chr1 58530528 58530899 -138664533 + MTC LTR MaLR 10 421 0 9 1031 634 257 87 161 chr1 58530936 58531034 -138664398 - B4 SINE B4 -4 288 216 9 1031 952 173 68 19 chr1 58531034 58531240 -138664192 - B3 SINE B2 0 216 1 1 1031 634 257 87 161 chr1 58531240 58531452 -138663980 - B4 SINE B4 -77 215 1 9 1031 383 242 43 17 chr1 58531928 58532038 -138663394 + B1_Mur1 SINE Alu 15 117 -3 1 1031 1157 68 0 0 chr1 58532065 58532211 -138663221 + B1_Mm SINE Alu 2 147 0 1 1031 347 233 11 40 chr1 58532540 58532682 -138662750 + MTD LTR MaLR 283 405 -14 1 1031 254 266 31 0 chr1 58532752 58532816 -138662616 + RSINE1 SINE B4 100 165 0 1 1031 631 142 9 26 chr1 58532948 58533064 -138662368 - PB1D9 SINE Alu -5 115 2 1 1031 772 162 27 34 chr1 58533065 58533212 -138662220 - B1_Mur2 SINE Alu -2 147 2 1 1031 417 183 250 0 chr1 58533538 58533642 -138661790 - B3 SINE B2 -10 206 77 1 1031 1374 94 15 20 chr1 58533660 58533855 -138661577 - B2_Mm2 SINE B2 -1 194 1 1 1031 1140 62 0 40 chr1 58533894 58534046 -138661386 + B1_Mus2 SINE Alu 1 146 -1 1 1031 21 36 0 0 chr1 58534134 58534162 -138661270 + AT_rich Low_complexity Low_complexity 1 28 0 1 1031 1046 71 0 0 chr1 58534172 58534313 -138661119 + B1_Mus1 SINE Alu 6 146 -2 1 1031 202 139 23 0 chr1 58534314 58534357 -138661075 + A-rich Low_complexity Low_complexity 2 45 0 1 1031 188 143 24 0 chr1 58534358 58534400 -138661032 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1031 213 241 37 0 chr1 58534502 58534556 -138660876 + ID2 SINE ID 1 56 -27 1 1031 460 279 69 35 chr1 58535087 58535232 -138660200 - RSINE1 SINE B4 -13 152 3 1 1031 1148 88 135 0 chr1 58535618 58535788 -138659644 + B2_Mm1t SINE B2 1 193 0 1 1031 204 216 0 0 chr1 58536126 58536163 -138659269 + CT-rich Low_complexity Low_complexity 2 38 0 1 1031 216 111 0 0 chr1 58536163 58536199 -138659233 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 1 1031 433 254 143 11 chr1 58536253 58536428 -138659004 - B3 SINE B2 -3 213 16 1 1031 271 310 28 0 chr1 58537277 58537348 -138658084 - PB1 SINE Alu -54 73 1 1 1031 814 153 0 22 chr1 58537457 58537591 -138657841 + B1_Mur2 SINE Alu 4 134 -15 1 1031 223 329 12 12 chr1 58538429 58538515 -138656917 - B4 SINE B4 -206 86 1 1 1031 377 158 13 0 chr1 58538821 58538897 -138656535 - B2_Mm2 SINE B2 -9 186 110 1 1031 1216 101 5 58 chr1 58538898 58539088 -138656344 + B2_Mm2 SINE B2 2 181 -14 1 1031 395 222 93 0 chr1 58539119 58539227 -138656205 + B2_Mm2 SINE B2 47 164 -31 1 1031 200 83 19 77 chr1 58539227 58539279 -138656153 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1 1031 498 196 0 0 chr1 58539311 58539413 -138656019 + G-rich Low_complexity Low_complexity 5 106 0 1 1031 789 66 0 104 chr1 58539413 58539548 -138655884 - B2_Mm2 SINE B2 -73 122 2 1 1031 462 278 17 0 chr1 58540328 58540443 -138654989 + ID_B1 SINE B4 102 218 -6 1 1031 207 100 0 0 chr1 58540858 58540888 -138654544 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 1031 1627 161 145 9 chr1 58540906 58541244 -138654188 + ORR1C2 LTR MaLR 1 384 0 1 1031 876 243 109 35 chr1 58541455 58541850 -138653582 + ORR1D1 LTR MaLR 1 377 -17 1 1031 557 241 23 0 chr1 58541923 58542056 -138653376 + B1_Mur2 SINE Alu 10 145 -4 1 1031 234 273 76 0 chr1 58542093 58542159 -138653273 + RLTR25B LTR ERVK 439 509 -519 1 1031 517 125 21 0 chr1 58542106 58542202 -138653230 + B1_Mus2 SINE Alu 50 147 0 1 1031 496 189 21 0 chr1 58542361 58542456 -138652976 - B3 SINE B2 -102 114 18 1 1031 426 302 107 51 chr1 58542551 58542592 -138652840 - B3 SINE B2 -28 188 155 1 1031 239 54 0 26 chr1 58542592 58542630 -138652802 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 1031 426 302 107 51 chr1 58542630 58542766 -138652666 - B3 SINE B2 -62 154 1 1 1031 511 299 66 28 chr1 58542911 58543093 -138652339 - B3 SINE B2 -5 211 23 1 1031 583 160 0 109 chr1 58543147 58543266 -138652166 + B1_Mus2 SINE Alu 1 106 -41 1 1031 453 36 0 0 chr1 58543422 58543477 -138651955 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1031 1311 79 10 35 chr1 58543716 58543913 -138651519 + B2_Mm1a SINE B2 1 192 -1 1 1031 251 263 0 66 chr1 58544214 58544275 -138651157 - RSINE1 SINE B4 -102 63 7 1 1031 1124 191 114 39 chr1 58544305 58544675 -138650757 + RMER16 LTR ERVK 1 533 0 1 1031 1180 201 152 12 chr1 58544675 58545090 -138650342 + RLTR19-int LTR ERVK 1 473 -5664 1 1031 1143 82 7 0 chr1 58545090 58545237 -138650195 + B1_Mus1 SINE Alu 1 148 0 1 1031 3281 105 76 103 chr1 58545272 58545688 -138649744 + RLTR19-int LTR ERVK 726 1111 -5026 1 1031 1113 53 0 0 chr1 58545688 58545819 -138649613 - B1_Mm SINE Alu -16 131 1 1 1031 3281 105 76 103 chr1 58545819 58545980 -138649452 + RLTR19-int LTR ERVK 1112 1259 -4878 1 1031 1208 48 0 0 chr1 58545980 58546125 -138649307 + B1_Mm SINE Alu 3 147 0 1 1031 3281 105 76 103 chr1 58546125 58546227 -138649205 + RLTR19-int LTR ERVK 1260 1388 -4749 1 1031 732 158 0 0 chr1 58546211 58546325 -138649107 + RLTR19-int LTR ERVK 3568 3681 -2456 1 1031 4686 175 48 45 chr1 58546352 58547172 -138648260 + RMER16-int LTR ERVK 3567 4400 -1006 1 1031 1089 69 21 0 chr1 58547172 58547316 -138648116 - B1_Mus1 SINE Alu 0 148 2 1 1031 4686 175 48 45 chr1 58547316 58547542 -138647890 + RMER16-int LTR ERVK 4401 4616 -790 1 1031 4089 133 34 3 chr1 58547533 58548153 -138647279 + RMER16-int LTR ERVK 4768 5406 0 1 1031 1189 146 72 105 chr1 58548153 58548515 -138646917 + RMER16 LTR ERVK 1 523 -10 1 1031 1804 192 87 58 chr1 58548521 58549006 -138646426 + RLTR11A LTR ERVK 30 528 0 1 1031 1166 62 7 0 chr1 58550219 58550365 -138645067 + B1_Mus1 SINE Alu 2 148 0 1 1031 225 0 0 0 chr1 58550371 58550396 -138645036 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1031 1172 55 0 7 chr1 58550793 58550941 -138644491 - B1_Mus2 SINE Alu 0 147 1 1 1031 435 289 83 14 chr1 58550988 58551132 -138644300 - RSINE1 SINE B4 0 165 12 1 1031 855 121 42 14 chr1 58551278 58551421 -138644011 - B1_Mur3 SINE Alu -1 148 2 1 1031 499 298 76 0 chr1 58551863 58552021 -138643411 - B3A SINE B2 -26 172 3 1 1031 484 340 118 23 chr1 58552269 58552618 -138642814 + Lx8 LINE L1 6833 7214 -259 1 1031 1412 58 5 31 chr1 58553553 58553747 -138641685 - B2_Mm1a SINE B2 -3 190 2 1 1031 1654 36 0 0 chr1 58553770 58553963 -138641469 - B2_Mm1t SINE B2 0 193 1 1 1031 291 329 0 0 chr1 58553987 58554069 -138641363 - ID_B1 SINE B4 -56 168 87 1 1031 350 273 27 3 chr1 58554651 58554755 -138640677 + B3A SINE B2 7 120 -75 1 1031 416 283 28 0 chr1 58555229 58555335 -138640097 + PB1D10 SINE Alu 1 109 -8 1 1031 577 238 0 38 chr1 58555394 58555525 -138639907 + RSINE1 SINE B4 4 129 -36 1 1031 22 35 0 0 chr1 58555578 58555607 -138639825 + AT_rich Low_complexity Low_complexity 1 29 0 1 1031 881 93 60 1 chr1 58555694 58555849 -138639583 + B2_Mm2 SINE B2 6 199 -17 1 1031 237 98 0 0 chr1 58555849 58555890 -138639542 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 1 1031 736 177 0 8 chr1 58555971 58556102 -138639330 + B1_Mus1 SINE Alu 1 130 -18 1 1031 252 239 14 14 chr1 58556291 58556363 -138639069 - MurSatRep1 Unknown Unknown -1852 285 214 1 1031 668 240 101 21 chr1 58556738 58556945 -138638487 + B3A SINE B2 1 205 -11 1 1031 235 316 38 12 chr1 58557352 58557432 -138638000 + RSINE1 SINE B4 83 164 -1 1 1031 827 243 33 42 chr1 58557504 58557719 -138637713 + B3 SINE B2 2 214 -2 1 1031 1673 26 0 0 chr1 58557908 58558100 -138637332 - B2_Mm1t SINE B2 0 193 2 1 1031 406 206 108 0 chr1 58558407 58558509 -138636923 + MTD LTR MaLR 307 419 0 1 1031 294 230 255 57 chr1 58558949 58559055 -138636377 - B1_Mur2 SINE Alu -22 127 1 1 1031 284 274 65 0 chr1 58559002 58559064 -138636368 - B4A SINE B4 -150 142 77 1 1031 1262 178 114 15 chr1 58559785 58560047 -138635385 - B4 SINE B4 -4 288 1 1 1031 243 0 0 0 chr1 58560067 58560094 -138635338 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1031 740 273 45 20 chr1 58560102 58560300 -138635132 - ID_B1 SINE B4 -21 203 1 1 1031 330 352 0 0 chr1 58560316 58560404 -138635028 - PB1D10 SINE Alu -17 100 13 1 1031 439 298 72 30 chr1 58560439 58560605 -138634827 - RMER30 DNA MER1_type -28 174 2 1 1031 316 320 132 7 chr1 58560781 58560932 -138634500 + B4A SINE B4 1 170 -122 1 1031 198 0 0 0 chr1 58562124 58562146 -138633286 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1031 839 127 182 45 chr1 58563173 58563371 -138632061 - URR1B DNA MER1_type 0 225 1 1 1031 1144 106 64 0 chr1 58563430 58563618 -138631814 - RLTR11A LTR ERVK 0 528 329 1 1031 264 30 0 0 chr1 58563744 58563777 -138631655 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1031 1176 55 7 0 chr1 58563777 58563922 -138631510 + B1_Mm SINE Alu 2 147 0 1 1031 272 145 14 68 chr1 58563925 58563999 -138631433 + A-rich Low_complexity Low_complexity 3 72 0 1 1031 635 48 51 15 chr1 58564985 58565091 -138630341 - MTB LTR MaLR -2 419 310 1 1031 691 336 41 38 chr1 58565171 58565805 -138629627 + MMERGLN-int LTR ERV1 1194 1829 -5727 1 1031 4154 144 31 15 chr1 58565943 58566618 -138628814 - RLTR17 LTR ERVK -6 686 1 1 1031 269 308 59 37 chr1 58566618 58566753 -138628679 + MuRRS4-int LTR ERV1 3889 4026 -1037 1 1031 298 304 8 8 chr1 58566902 58567028 -138628404 + RLTR6-int LTR ERV1 5492 5682 -2096 1 1031 263 285 50 21 chr1 58568140 58568280 -138627152 - RMER16-int LTR ERVK -22 5384 5241 1 1031 634 234 161 67 chr1 58568491 58568821 -138626611 + RLTR9A LTR ERVK 8 368 0 1 1031 1694 118 58 29 chr1 58569204 58569517 -138625915 + RMER16-int LTR ERVK 334 655 -4751 1 1031 14238 118 42 6 chr1 58569568 58571281 -138624151 + RMER16-int LTR ERVK 858 2635 -2771 1 1031 261 0 0 0 chr1 58571281 58571310 -138624122 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1031 14238 118 42 6 chr1 58571310 58571951 -138623481 + RMER16-int LTR ERVK 2636 3296 -2110 1 1031 808 172 21 11 chr1 58571930 58572118 -138623314 + RMER16-int LTR ERVK 3511 3700 -1706 1 1031 952 295 13 10 chr1 58572180 58572570 -138622862 + RLTR6-int LTR ERV1 7274 7664 -114 1 1031 519 279 91 107 chr1 58572942 58573316 -138622116 + RLTR9A LTR ERVK 1 368 0 1 1031 906 176 30 20 chr1 58573909 58574143 -138621289 - RMER16-int LTR ERVK -1540 3866 3693 1 1031 49 112 0 0 chr1 58574163 58574387 -138621045 + AT_rich Low_complexity Low_complexity 1 224 0 1 1031 2100 117 26 162 chr1 58575964 58576433 -138618999 - RLTR23 LTR ERV1 -2 428 24 2 1031 3234 48 8 2 chr1 58576739 58577137 -138618295 - MTB LTR MaLR 0 400 1 2 1031 1542 253 59 24 chr1 58577260 58577799 -138617633 + Lx8 LINE L1 6407 6964 -509 2 1031 353 264 64 0 chr1 58577815 58577925 -138617507 - Lx8 LINE L1 -1040 6433 6317 2 1031 266 0 29 0 chr1 58577928 58577962 -138617470 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1031 283 310 138 0 chr1 58578163 58578337 -138617095 - L1_Mur3 LINE L1 -3177 2703 2506 2 1031 344 315 80 32 chr1 58578348 58578535 -138616897 + Lx8 LINE L1 7027 7222 -251 2 1031 234 121 0 111 chr1 58578652 58578706 -138616726 - PB1D10 SINE Alu -19 101 52 2 1031 612 266 59 6 chr1 58578705 58578875 -138616557 + B4 SINE B4 102 280 -12 2 1031 415 250 99 10 chr1 58579126 58579227 -138616205 - RSINE1 SINE B4 -31 134 25 2 1031 471 165 90 30 chr1 58579254 58579354 -138616078 - PB1D7 SINE Alu -6 114 9 2 1031 349 209 65 21 chr1 58579272 58579365 -138616067 - ID_B1 SINE B4 -48 176 80 2 1031 607 200 0 18 chr1 58579445 58579557 -138615875 + B1_Mur1 SINE Alu 40 149 0 2 1031 22 70 0 0 chr1 58579807 58579850 -138615582 + AT_rich Low_complexity Low_complexity 1 43 0 2 1031 935 129 7 0 chr1 58580515 58580655 -138614777 - B1_Mus2 SINE Alu -1 146 6 2 1031 191 272 11 120 chr1 58583319 58583411 -138612021 + MIR3 SINE MIR 101 182 -26 2 1031 873 160 0 7 chr1 58584088 58584233 -138611199 - B1_Mus2 SINE Alu 0 147 4 2 1031 323 281 120 38 chr1 58588750 58588883 -138606549 - RSINE1 SINE B4 -19 146 3 2 1031 32 91 0 0 chr1 58588883 58588971 -138606461 + AT_rich Low_complexity Low_complexity 1 88 0 2 128 894 164 21 0 chr1 58589053 58589193 -138606239 + B1_Mur3 SINE Alu 1 143 -6 2 1032 802 190 51 0 chr1 58589478 58589615 -138605817 - B1_Mur2 SINE Alu -5 144 1 2 1032 737 51 0 10 chr1 58589970 58590069 -138605363 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 2 1032 243 0 0 0 chr1 58590679 58590706 -138604726 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1032 25 0 0 0 chr1 58592564 58592589 -138602843 + AT_rich Low_complexity Low_complexity 1 25 0 2 1032 650 188 90 8 chr1 58593554 58593688 -138601744 + B1_Mur4 SINE Alu 6 150 0 2 1032 517 212 342 6 chr1 58593730 58593765 -138601667 - B3 SINE B2 0 216 170 2 1032 468 0 0 0 chr1 58593765 58593817 -138601615 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1032 517 212 342 6 chr1 58593817 58593942 -138601490 - B3 SINE B2 -47 169 2 2 1032 513 309 45 13 chr1 58594147 58594301 -138601131 - RSINE1 SINE B4 -4 161 3 2 1032 643 228 25 57 chr1 58594339 58594497 -138600935 - RSINE1 SINE B4 -11 154 2 2 1032 639 116 215 0 chr1 58594608 58594729 -138600703 - B1_Mus1 SINE Alu -1 147 1 2 1032 6527 104 18 4 chr1 58594906 58595204 -138600228 + Lx4A LINE L1 6085 6389 -669 2 1032 204 40 0 0 chr1 58595204 58595229 -138600203 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 1032 6527 104 18 4 chr1 58595229 58595889 -138599543 + Lx4A LINE L1 6390 7055 -3 2 1032 587 208 9 9 chr1 58596104 58596211 -138599221 - B1_Mus2 SINE Alu -6 141 35 2 1032 252 0 0 0 chr1 58596370 58596398 -138599034 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1032 532 242 75 0 chr1 58597697 58597817 -138597615 - B1_Mur1 SINE Alu 0 149 21 2 1032 3867 142 54 26 chr1 58597965 58598700 -138596732 + RMER6A LTR ERVK 1 756 0 2 1032 27 62 0 0 chr1 58598984 58599032 -138596400 + AT_rich Low_complexity Low_complexity 1 48 0 2 1032 240 260 33 154 chr1 58599066 58599157 -138596275 + B1_Mus2 SINE Alu 13 92 -55 2 1032 329 253 12 12 chr1 58599182 58599262 -138596170 + Charlie2b DNA MER1_type 2503 2582 -200 2 1032 613 356 89 54 chr1 58599331 58599725 -138595707 + MLT1F2 LTR MaLR 22 433 -127 2 1032 642 240 13 33 chr1 58599725 58599876 -138595556 + B1_Mur1 SINE Alu 2 149 0 2 1032 613 356 89 54 chr1 58599876 58599965 -138595467 + MLT1F2 LTR MaLR 434 522 -38 2 1032 261 358 0 12 chr1 58599999 58600081 -138595351 - RSINE1 SINE B4 -9 156 76 2 1032 291 409 8 8 chr1 58600124 58600257 -138595175 - B4 SINE B4 -158 134 2 2 1032 396 204 77 58 chr1 58600301 58600405 -138595027 - PB1D7 SINE Alu 0 120 15 2 1032 783 206 212 0 chr1 58600820 58600985 -138594447 - B3 SINE B2 -16 200 1 2 1032 538 247 135 16 chr1 58601178 58601371 -138594061 - B3 SINE B2 0 216 1 2 1032 713 199 170 6 chr1 58601722 58601904 -138593528 - B3 SINE B2 -1 215 4 2 1032 1058 217 14 0 chr1 58602720 58602927 -138592505 - B3 SINE B2 -6 210 1 2 1032 23 0 0 0 chr1 58603622 58603645 -138591787 + AT_rich Low_complexity Low_complexity 1 23 0 2 1032 844 105 210 25 chr1 58603732 58603889 -138591543 - B2_Mm2 SINE B2 -8 187 2 2 1032 4597 35 11 14 chr1 58604140 58604697 -138590735 + L1_Mus1 LINE L1 6013 6567 0 2 1032 428 119 0 0 chr1 58604875 58604934 -138590498 - RSINE1 SINE B4 -63 102 44 2 1032 369 219 17 9 chr1 58604937 58605052 -138590380 + CT-rich Low_complexity Low_complexity 1 116 0 2 1032 904 196 40 11 chr1 58605052 58605227 -138590205 - B3 SINE B2 -27 189 10 2 1032 377 280 152 0 chr1 58605268 58605386 -138590046 + ID_B1 SINE B4 88 223 -1 2 1032 373 234 110 0 chr1 58605967 58606121 -138589311 - L1MA9 LINE L1 -2 6310 6140 2 1032 263 338 35 14 chr1 58606273 58606417 -138589015 - B1F1 SINE Alu -2 147 1 2 1032 414 217 137 15 chr1 58606429 58606560 -138588872 - B1_Mur1 SINE Alu 0 149 3 2 1032 526 206 123 31 chr1 58606580 58606710 -138588722 - B1_Mur2 SINE Alu -7 142 1 2 1032 339 348 20 60 chr1 58606986 58607136 -138588296 + ID_B1 SINE B4 80 223 -1 2 1032 627 239 45 0 chr1 58607150 58607284 -138588148 + B1_Mur1 SINE Alu 3 142 -7 2 1032 855 230 73 5 chr1 58607383 58607588 -138587844 + Lx7 LINE L1 5587 5805 -1891 2 1032 741 220 0 0 chr1 58607700 58607841 -138587591 + B1_Mur2 SINE Alu 2 142 -7 2 1032 2124 157 57 22 chr1 58608109 58608514 -138586918 + MTD LTR MaLR 1 419 0 2 1032 21 0 0 0 chr1 58608949 58608970 -138586462 + AT_rich Low_complexity Low_complexity 1 21 0 2 1032 28 29 0 0 chr1 58609245 58609280 -138586152 + AT_rich Low_complexity Low_complexity 1 35 0 2 1032 575 269 84 8 chr1 58609526 58609657 -138585775 - RSINE1 SINE B4 -22 143 3 2 1032 255 242 152 11 chr1 58609865 58609957 -138585475 + B4A SINE B4 1 105 -187 2 1032 41 0 0 0 chr1 58610497 58610538 -138584894 + AT_rich Low_complexity Low_complexity 1 41 0 2 1032 594 151 106 32 chr1 58610990 58611113 -138584319 - B1_Mus2 SINE Alu 0 149 18 2 1032 405 283 18 45 chr1 58611264 58611375 -138584057 + PB1D10 SINE Alu 1 108 -9 2 1032 957 109 29 0 chr1 58612522 58612659 -138582773 - B1_Mur4 SINE Alu -7 143 3 2 1032 203 312 70 31 chr1 58612843 58612972 -138582460 - L2c LINE L2 -3 3384 3251 2 1032 297 0 0 0 chr1 58613108 58613141 -138582291 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1032 24 53 0 0 chr1 58614315 58614353 -138581079 + AT_rich Low_complexity Low_complexity 1 38 0 2 1032 387 252 39 39 chr1 58615166 58615294 -138580138 + B1F SINE Alu 20 147 -2 2 1032 792 162 0 39 chr1 58615993 58616147 -138579285 + B1_Mus1 SINE Alu 1 148 0 2 1032 24 32 0 0 chr1 58616194 58616225 -138579207 + AT_rich Low_complexity Low_complexity 1 31 0 2 1032 277 314 0 14 chr1 58616227 58616298 -138579134 + PB1D10 SINE Alu 2 71 -46 2 1032 400 236 0 79 chr1 58616337 58616438 -138578994 - B1_Mur1 SINE Alu 0 149 57 2 1032 252 159 78 16 chr1 58616436 58616500 -138578932 + B1_Mur3 SINE Alu 81 148 -1 2 1032 219 209 70 0 chr1 58616523 58616566 -138578866 - PB1D9 SINE Alu -49 71 26 2 1032 735 149 39 96 chr1 58616617 58616773 -138578659 - B1_Mus2 SINE Alu 0 147 1 2 1032 745 265 146 36 chr1 58616948 58617270 -138578162 + MTD LTR MaLR 18 388 -31 2 1032 1602 27 21 0 chr1 58617296 58617484 -138577948 + B2_Mm1t SINE B2 2 193 0 2 1032 591 274 172 36 chr1 58617550 58617780 -138577652 - Lx5 LINE L1 -627 6423 6218 2 1032 6289 41 1 13 chr1 58617780 58618550 -138576882 - L1_Mus1 LINE L1 -1 6566 5806 2 1032 591 290 180 61 chr1 58618550 58618748 -138576684 - Lx5 LINE L1 -833 6217 5964 2 1032 1448 250 200 24 chr1 58618746 58619381 -138576051 + Lx6 LINE L1 6688 7434 -26 2 1032 980 223 6 11 chr1 58619455 58619632 -138575800 - B3A SINE B2 -22 176 1 2 1032 702 209 7 45 chr1 58620145 58620300 -138575132 - B1F2 SINE Alu 0 149 1 2 1032 243 0 0 0 chr1 58620311 58620338 -138575094 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2 1032 1340 90 11 0 chr1 58620353 58620541 -138574891 + B2_Mm1t SINE B2 1 190 -3 2 1032 775 168 46 0 chr1 58620888 58621019 -138574413 + B1_Mus2 SINE Alu 2 138 -9 2 1032 229 225 13 101 chr1 58621863 58621942 -138573490 - Charlie24 DNA MER1_type -1639 811 740 2 1032 400 238 22 56 chr1 58622206 58622295 -138573137 - ID_B1 SINE B4 -59 165 80 2 1032 235 242 15 15 chr1 58622893 58622960 -138572472 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1032 299 243 127 64 chr1 58623022 58623132 -138572300 - B4A SINE B4 -156 136 20 2 1032 348 296 104 23 chr1 58623489 58623662 -138571770 + L1M5 LINE L1 4807 4993 -1153 2 1032 590 298 0 0 chr1 58623662 58623793 -138571639 + RSINE1 SINE B4 2 132 -33 2 1032 570 227 9 9 chr1 58623930 58624041 -138571391 - PB1D10 SINE Alu -6 111 1 2 1032 1326 159 59 5 chr1 58624133 58624391 -138571041 + Lx5 LINE L1 6311 6656 -804 2 1032 1991 202 11 18 chr1 58624394 58624833 -138570599 + Lx5 LINE L1 6613 7048 -2 2 1032 1605 312 107 12 chr1 58624871 58626088 -138569344 + L1_Mur3 LINE L1 4483 5814 -66 3 1032 2413 70 3 69 chr1 58626112 58626462 -138568970 + ORR1A2 LTR MaLR 1 327 0 3 1032 228 35 0 0 chr1 58626486 58626515 -138568917 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1032 2306 160 34 27 chr1 58626752 58627195 -138568237 + RMER6A LTR ERVK 311 756 0 3 1032 322 211 92 0 chr1 58627703 58627812 -138567620 + L1M4 LINE L1 48 166 -6376 3 1032 430 286 101 75 chr1 58628088 58628473 -138566959 + L1M4 LINE L1 165 559 -5983 3 1032 289 291 63 4 chr1 58628474 58628568 -138566864 + PB1D10 SINE Alu 23 127 0 3 1032 1392 254 43 31 chr1 58628984 58629467 -138565965 - L1MB3 LINE L1 -56 6127 5639 3 1032 492 115 39 0 chr1 58629507 58629585 -138565847 - B3 SINE B2 -135 81 1 3 1032 933 130 22 0 chr1 58629637 58629775 -138565657 + B1_Mur4 SINE Alu 1 141 -9 3 1032 31 58 0 0 chr1 58629809 58629861 -138565571 + AT_rich Low_complexity Low_complexity 1 52 0 3 1032 2267 151 22 97 chr1 58629892 58630249 -138565183 - MTC LTR MaLR 0 421 99 3 1032 1064 61 0 0 chr1 58630249 58630380 -138565052 - B1_Mus2 SINE Alu -15 132 2 3 1032 2267 151 22 97 chr1 58630380 58630477 -138564955 - MTC LTR MaLR -323 98 1 3 1032 422 287 96 8 chr1 58630491 58630635 -138564797 - MIRb SINE MIR -35 173 23 3 1032 266 245 0 36 chr1 58630636 58630691 -138564741 - PB1D10 SINE Alu -12 105 53 3 1032 1599 202 71 17 chr1 58630964 58631316 -138564116 + MTEb LTR MaLR 1 371 -8 3 1032 528 329 46 70 chr1 58631336 58631608 -138563824 + ERVL-E-int LTR ERVL 2949 3229 -2256 3 1032 603 260 87 34 chr1 58631608 58631815 -138563617 - MER20 DNA MER1_type 0 219 2 3 1032 528 321 43 79 chr1 58631815 58631902 -138563530 + ERVL-E-int LTR ERVL 3188 3264 -2403 3 1032 1385 34 85 0 chr1 58632096 58632114 -138563318 - B2_Mm1a SINE B2 0 193 176 3 1032 243 0 0 0 chr1 58632114 58632141 -138563291 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1032 1385 34 85 0 chr1 58632141 58632299 -138563133 - B2_Mm1a SINE B2 -18 175 3 3 1032 1480 64 5 0 chr1 58632305 58632493 -138562939 - B2_Mm2 SINE B2 -6 189 1 3 1032 252 59 0 0 chr1 58632704 58632738 -138562694 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 3 1032 1263 58 98 0 chr1 58633207 58633381 -138562051 + B2_Mm1t SINE B2 3 193 0 3 1032 1123 291 97 30 chr1 58633943 58634418 -138561014 + MLT2B4 LTR ERVL 47 553 -3 3 1032 333 340 151 48 chr1 58635055 58635392 -138560040 + MLT1J LTR MaLR 109 480 -32 3 1032 1044 121 7 7 chr1 58635429 58635579 -138559853 - B1_Mur4 SINE Alu 0 150 1 3 1032 261 0 0 0 chr1 58635858 58635887 -138559545 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1032 786 260 47 0 chr1 58636093 58636285 -138559147 + B3 SINE B2 1 201 -15 3 1032 567 248 31 31 chr1 58636467 58636629 -138558803 - RSINE1 SINE B4 -2 163 2 3 1032 1244 245 117 5 chr1 58636942 58637095 -138558337 + L1MA6 LINE L1 5619 5788 -512 3 1032 261 0 0 0 chr1 58637095 58637124 -138558308 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1032 1244 243 118 4 chr1 58637124 58637460 -138557972 + L1MA6 LINE L1 5789 6161 -139 3 1032 755 119 0 0 chr1 58637473 58637582 -138557850 - B1_Mus1 SINE Alu 0 148 40 3 1032 293 0 0 26 chr1 58637648 58637686 -138557746 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1032 607 305 20 0 chr1 58637741 58637892 -138557540 + RSINE1 SINE B4 2 155 -10 3 1032 341 248 134 63 chr1 58638024 58638166 -138557266 + RSINE1 SINE B4 4 155 -10 3 1032 795 114 112 15 chr1 58638209 58638343 -138557089 - B1_Mus1 SINE Alu 0 148 2 3 1032 307 253 431 0 chr1 58638389 58638535 -138556897 - ID_B1 SINE B4 -15 209 1 3 1032 244 278 110 9 chr1 58638724 58638833 -138556599 + PB1D9 SINE Alu 1 120 0 3 1032 192 245 0 0 chr1 58638833 58638886 -138556546 + A-rich Low_complexity Low_complexity 1 53 0 3 1032 599 130 269 0 chr1 58639291 58639399 -138556033 - B1_Mur4 SINE Alu -13 137 1 3 1032 630 273 90 43 chr1 58640045 58640324 -138555108 - B4A SINE B4 0 292 1 3 1032 213 39 0 0 chr1 58640604 58640630 -138554802 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1032 361 236 140 0 chr1 58640891 58640992 -138554440 + B1_Mur1 SINE Alu 3 115 -34 3 1032 278 50 25 0 chr1 58640992 58641032 -138554400 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 3 1032 21 0 0 0 chr1 58641554 58641575 -138553857 + AT_rich Low_complexity Low_complexity 1 21 0 3 1032 258 55 53 35 chr1 58641670 58641727 -138553705 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 3 1032 267 269 62 25 chr1 58644363 58644443 -138550989 + RSINE1 SINE B4 83 165 0 3 1032 552 283 29 0 chr1 58644473 58644611 -138550821 + ID_B1 SINE B4 82 223 -1 3 1032 279 203 65 36 chr1 58644740 58644851 -138550581 - Charlie5 DNA MER1_type -8 2616 2499 3 1032 698 194 75 0 chr1 58644851 58644985 -138550447 + B1_Mus2 SINE Alu 1 144 -3 3 1032 246 270 58 101 chr1 58644985 58645268 -138550164 - Charlie5 DNA MER1_type -126 2498 2239 3 1032 647 231 6 60 chr1 58645281 58645447 -138549985 + B3A SINE B2 33 189 -9 3 1032 260 167 236 0 chr1 58645465 58645537 -138549895 - Charlie5 DNA MER1_type -2501 123 35 3 1032 1007 93 14 0 chr1 58645641 58645780 -138549652 - B1_Mur3 SINE Alu -7 142 2 3 1032 357 279 26 43 chr1 58646072 58646188 -138549244 - PB1 SINE Alu 0 127 14 3 1032 635 200 37 7 chr1 58646516 58646652 -138548780 - B1_Mur3 SINE Alu -9 140 1 3 1032 245 339 33 42 chr1 58647227 58647347 -138548085 + Cheshire DNA MER1_type 2119 2237 -183 3 1032 345 268 0 12 chr1 58647410 58647493 -138547939 + Cheshire DNA MER1_type 2339 2420 0 3 1032 207 333 71 36 chr1 58647655 58647739 -138547693 + MIRc SINE MIR 61 147 -121 3 1032 185 108 27 0 chr1 58647889 58647926 -138547506 + (TCTCCC)n Simple_repeat Simple_repeat 4 41 0 3 1032 221 200 0 0 chr1 58648252 58648297 -138547135 - RSINE1 SINE B4 -115 50 6 3 1032 849 243 55 64 chr1 58648596 58648744 -138546688 - L1M4 LINE L1 -395 5784 5635 3 1032 978 140 7 0 chr1 58648744 58648887 -138546545 + B1_Mur4 SINE Alu 2 145 -5 3 1032 849 243 55 64 chr1 58648887 58649064 -138546368 - L1M4 LINE L1 -545 5634 5462 3 1032 554 319 0 0 chr1 58649064 58649202 -138546230 + ID_B1 SINE B4 79 216 -8 3 1032 334 246 113 61 chr1 58649307 58649552 -138545880 - L1M4 LINE L1 -795 5351 5090 3 1032 213 333 17 0 chr1 58649615 58649675 -138545757 - B1_Mus1 SINE Alu -60 88 28 3 1032 863 233 59 5 chr1 58649755 58649958 -138545474 - B3 SINE B2 -2 214 1 3 1032 466 257 148 10 chr1 58650003 58650313 -138545119 - L1M4 LINE L1 -1203 4943 4591 3 1032 301 278 156 89 chr1 58650506 58650743 -138544689 - L1M4 LINE L1 -1744 4402 4150 3 1032 2226 0 0 0 chr1 58650842 58651129 -138544303 - L1Md_T LINE L1 0 6582 6337 3 1032 695 196 0 38 chr1 58651388 58651528 -138543904 + B1_Mur3 SINE Alu 2 119 -30 3 1032 234 200 17 0 chr1 58651602 58651662 -138543770 + T-rich Low_complexity Low_complexity 5 65 0 3 1032 512 282 0 0 chr1 58652069 58652179 -138543253 + PB1D7 SINE Alu 3 112 -8 3 1032 574 288 58 0 chr1 58652198 58652337 -138543095 + B1_Mur2 SINE Alu 3 149 0 3 1032 236 311 67 19 chr1 58652791 58652896 -138542536 + B4A SINE B4 81 190 -102 3 1032 372 234 24 47 chr1 58652816 58652901 -138542531 + PB1D10 SINE Alu 22 104 -13 3 1032 2336 264 81 53 chr1 58653169 58653957 -138541475 - Lx8 LINE L1 -145 7328 6519 3 1032 1053 233 0 5 chr1 58654260 58654467 -138540965 + B3 SINE B2 1 206 -10 3 1032 23 0 0 0 chr1 58654467 58654490 -138540942 + AT_rich Low_complexity Low_complexity 1 23 0 3 1032 356 313 53 15 chr1 58654706 58654839 -138540593 - MLT1A0 LTR MaLR -227 138 1 3 1032 1565 103 20 4 chr1 58655154 58655398 -138540034 - Lx2 LINE L1 -1 6996 6749 3 1032 473 230 0 12 chr1 58655604 58655710 -138539722 - PB1D9 SINE Alu -27 122 27 3 1032 903 269 79 45 chr1 58655757 58656022 -138539410 + B4A SINE B4 13 286 -6 3 1032 274 361 0 9 chr1 58656069 58656178 -138539254 + PB1D10 SINE Alu 3 110 -7 3 1032 206 289 0 0 chr1 58656182 58656227 -138539205 + polypurine Low_complexity Low_complexity 4 48 0 3 1032 414 298 101 0 chr1 58656306 58656534 -138538898 + L1M5 LINE L1 2526 2776 -3370 3 1032 590 143 9 0 chr1 58656554 58656659 -138538773 + GA-rich Low_complexity Low_complexity 1 106 0 3 1032 329 302 110 46 chr1 58656740 58656785 -138538647 + L1M5 LINE L1 3094 3143 -3003 3 1032 1332 212 96 45 chr1 58656785 58657181 -138538251 - MTD LTR MaLR 0 419 4 3 1032 329 302 110 46 chr1 58657181 58657416 -138538016 + L1M5 LINE L1 3144 3392 -2754 3 1032 269 314 0 0 chr1 58657457 58657527 -138537905 - B1F1 SINE Alu -71 78 9 3 1032 279 274 110 0 chr1 58657564 58657637 -138537795 + ID4_ SINE ID 3 83 0 3 1032 1267 80 29 0 chr1 58657854 58658029 -138537403 + B2_Mm2 SINE B2 2 181 -14 3 1032 362 98 321 9 chr1 58658116 58658228 -138537204 + B2_Mm2 SINE B2 47 193 -2 3 1032 2247 138 83 8 chr1 58658561 58658933 -138536499 - MTC LTR MaLR 0 421 22 3 1032 486 0 0 0 chr1 58658933 58658987 -138536445 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1032 229 254 30 0 chr1 58659043 58659110 -138536322 + Charlie7a DNA MER1_type 42 110 -162 3 1032 418 294 27 75 chr1 58659179 58659326 -138536106 - B1F1 SINE Alu -6 143 4 3 1032 404 297 115 15 chr1 58659429 58659689 -138535743 + Charlie7 DNA MER1_type 284 569 -2043 3 1032 877 130 0 64 chr1 58661065 58661221 -138534211 - B1_Mus2 SINE Alu 0 147 2 3 1032 708 61 0 0 chr1 58661432 58661530 -138533902 + (TAG)n Simple_repeat Simple_repeat 3 100 0 3 1032 299 239 43 40 chr1 58661832 58661925 -138533507 - L2a LINE L2 -8 3418 3297 3 1032 666 122 0 0 chr1 58661951 58662058 -138533374 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 1032 224 302 37 9 chr1 58662191 58662298 -138533134 + CT-rich Low_complexity Low_complexity 5 114 0 3 1032 278 242 152 0 chr1 58662307 58662373 -138533059 - B1F SINE Alu -61 88 13 3 1032 578 243 50 5 chr1 58662427 58662569 -138532863 - ID_B1 SINE B4 -77 215 70 3 1032 331 295 74 0 chr1 58662811 58662906 -138532526 - PB1D7 SINE Alu -8 112 11 3 1032 4502 144 38 3 chr1 58662906 58663690 -138531742 + L1Md_F LINE L1 190 1001 -5618 3 1032 4235 24 64 27 chr1 58663690 58664253 -138531179 + RLTR6_Mm LTR ERV1 1 584 -70 3 1032 1689 98 1 14 chr1 58664253 58664610 -138530822 + L1Md_F LINE L1 883 1336 -5324 3 1032 987 89 0 50 chr1 58664889 58665030 -138530402 + B1_Mus2 SINE Alu 1 134 -13 4 1032 234 0 0 0 chr1 58665030 58665056 -138530376 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4 1032 240 235 32 184 chr1 58665110 58665150 -138530282 - PB1D10 SINE Alu -5 112 77 4 1032 1373 76 11 5 chr1 58665150 58665336 -138530096 - B2_Mm2 SINE B2 -7 188 2 4 1032 240 235 32 184 chr1 58665336 58665420 -138530012 - PB1D10 SINE Alu -41 76 7 4 1032 2121 112 22 0 chr1 58665424 58665736 -138529696 - ORR1A2 LTR MaLR -8 319 1 4 1032 183 154 77 0 chr1 58666270 58666309 -138529123 + L2c LINE L2 3260 3301 -86 4 1032 1546 38 0 16 chr1 58666545 58666732 -138528700 - B2_Mm1t SINE B2 -8 185 2 4 1032 3482 161 45 72 chr1 58667566 58668360 -138527072 + RLTR40 LTR ERVK 1 775 -42 4 1032 2196 113 3 60 chr1 58668360 58668707 -138526725 - ORR1A2 LTR MaLR 0 327 1 4 1032 3482 161 45 72 chr1 58668707 58668741 -138526691 + RLTR40 LTR ERVK 776 806 -11 4 1032 675 295 106 24 chr1 58668753 58669132 -138526300 - L1MEc LINE L1 -4948 1452 1043 4 1032 264 238 0 87 chr1 58669171 58669240 -138526192 - B4A SINE B4 0 292 230 4 1032 279 247 0 115 chr1 58669239 58669326 -138526106 - B4A SINE B4 0 292 216 4 1032 480 253 24 78 chr1 58669440 58669607 -138525825 - RSINE1 SINE B4 0 165 8 4 1032 571 303 40 9 chr1 58669600 58669823 -138525609 - B4A SINE B4 -61 231 2 4 1032 267 350 37 58 chr1 58669823 58669956 -138525476 + B4A SINE B4 77 205 -87 4 1032 703 201 0 40 chr1 58669846 58669996 -138525436 + B1_Mur1 SINE Alu 6 149 0 4 1032 1120 95 0 0 chr1 58670161 58670309 -138525123 - B1_Mus1 SINE Alu 0 148 1 4 1032 496 137 177 14 chr1 58670369 58670510 -138524922 - Lx9 LINE L1 -15 7629 7466 4 1032 1266 41 0 0 chr1 58670533 58670679 -138524753 - B1_Mus2 SINE Alu 0 147 2 4 1032 1409 278 173 23 chr1 58671016 58671785 -138523647 - L1MEc LINE L1 -5438 962 79 4 1032 1248 238 30 78 chr1 58671793 58672163 -138523269 - ORR1E LTR MaLR -7 352 1 4 1032 1836 258 73 55 chr1 58672163 58672725 -138522707 - ORR1E-int LTR MaLR -53 1527 955 4 1032 257 232 29 14 chr1 58673277 58673347 -138522085 - ID4_ SINE ID -11 72 2 4 1032 227 31 0 30 chr1 58673404 58673437 -138521995 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1032 506 287 89 6 chr1 58673486 58673644 -138521788 - B4A SINE B4 -121 171 1 4 1032 395 285 63 24 chr1 58673891 58674096 -138521336 - Tigger15a DNA TcMar -49 666 454 4 1032 197 250 250 0 chr1 58674498 58674606 -138520826 + L2b LINE L2 3252 3386 -1 4 1032 793 167 25 19 chr1 58674686 58674845 -138520587 - MTEb LTR MaLR -202 177 18 4 1032 259 312 10 0 chr1 58675534 58675630 -138519802 - L1MA4 LINE L1 -370 5930 5834 4 1032 216 0 0 0 chr1 58675641 58675665 -138519767 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1032 896 204 35 10 chr1 58675683 58675886 -138519546 + B3 SINE B2 4 211 -5 4 1032 395 290 19 0 chr1 58675912 58676019 -138519413 - PB1D10 SINE Alu -8 109 1 4 1032 1442 198 147 22 chr1 58676182 58676549 -138518883 - MTC LTR MaLR -8 413 1 4 1032 314 301 92 40 chr1 58676584 58676736 -138518696 - MIR SINE MIR -72 190 31 4 1032 606 320 29 5 chr1 58676931 58677135 -138518297 - B4 SINE B4 -2 290 82 4 1032 450 0 0 0 chr1 58677161 58677211 -138518221 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1032 1112 84 0 0 chr1 58677212 58677355 -138518077 - B1_Mus1 SINE Alu -4 144 2 4 1032 760 221 7 0 chr1 58677379 58677519 -138517913 - B1_Mur2 SINE Alu -6 143 3 4 1032 1198 279 124 15 chr1 58677689 58678147 -138517285 - Lx8 LINE L1 -159 7314 6807 4 1032 326 341 79 7 chr1 58678190 58678329 -138517103 - MER5B DNA MER1_type -20 158 10 4 1032 194 284 198 10 chr1 58678847 58678943 -138516489 + MIRb SINE MIR 107 220 -48 4 1032 30 27 0 0 chr1 58679185 58679222 -138516210 + AT_rich Low_complexity Low_complexity 1 37 0 4 1032 1151 62 7 0 chr1 58679924 58680069 -138515363 - B1_Mus2 SINE Alu -1 146 1 4 1032 864 69 0 0 chr1 58680274 58680390 -138515042 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 4 1032 816 217 82 26 chr1 58681059 58681253 -138514179 + ID_B1 SINE B4 3 207 -17 4 1032 208 172 0 33 chr1 58681256 58681316 -138514116 + GA-rich Low_complexity Low_complexity 1 58 0 4 1032 484 283 119 44 chr1 58681511 58681762 -138513670 - L1ME1 LINE L1 -49 6130 5861 4 1032 425 308 25 0 chr1 58681821 58681836 -138513596 + B1F1 SINE Alu 13 135 -14 4 1032 496 235 0 29 chr1 58681836 58681941 -138513491 + ID_B1 SINE B4 109 210 -14 4 1032 270 115 0 0 chr1 58682444 58682496 -138512936 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 4 1032 336 314 141 0 chr1 58682605 58682726 -138512706 + ID_B1 SINE B4 84 221 -3 4 1032 989 123 14 7 chr1 58682818 58682965 -138512467 - B1_Mur4 SINE Alu 0 150 3 4 1032 645 259 63 23 chr1 58683084 58683305 -138512127 - Lx7 LINE L1 -331 7365 7136 4 1032 1102 251 3 109 chr1 58683292 58683641 -138511791 - Lx7 LINE L1 -796 6900 6589 4 1032 2002 172 53 53 chr1 58683647 58684156 -138511276 + RMER6A LTR ERVK 1 509 -247 4 1032 1106 261 22 46 chr1 58684260 58684674 -138510758 - Lx7 LINE L1 -1600 6096 5693 4 1032 26 88 0 0 chr1 58684690 58684758 -138510674 + AT_rich Low_complexity Low_complexity 1 68 0 4 1032 537 182 169 42 chr1 58684819 58684959 -138510473 + B3A SINE B2 1 146 -49 4 1032 551 74 12 0 chr1 58684959 58685040 -138510392 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1032 458 182 169 42 chr1 58685040 58685065 -138510367 + B2_Mm2 SINE B2 147 186 -9 4 1032 1256 108 11 0 chr1 58685075 58685251 -138510181 + B2_Mm1t SINE B2 2 179 -14 4 1032 288 114 367 30 chr1 58685337 58685435 -138509997 + B2_Mm2 SINE B2 47 177 -18 4 1032 258 32 0 0 chr1 58685438 58685469 -138509963 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1032 1208 35 0 0 chr1 58685469 58685610 -138509822 - B1_Mus1 SINE Alu -6 142 2 4 1032 1677 233 22 10 chr1 58685664 58686067 -138509365 - MTD LTR MaLR -11 408 1 4 1032 401 262 17 9 chr1 58686067 58686200 -138509232 - L1MA4 LINE L1 -163 6137 5999 4 1032 219 88 0 0 chr1 58686663 58686697 -138508735 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1032 468 0 0 0 chr1 58686697 58686749 -138508683 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1032 802 301 68 21 chr1 58686759 58687098 -138508334 + L1MC4 LINE L1 6713 7067 -975 4 1032 264 130 0 0 chr1 58687601 58687647 -138507785 + MTC LTR MaLR 2 47 -374 4 1032 553 160 1 9 chr1 58687647 58687750 -138507682 + RLTR13D5 LTR ERVK 4 100 -706 4 1032 339 80 40 0 chr1 58687750 58687800 -138507632 + RLTR45-int LTR ERVK 2046 2097 -5147 4 1032 405 188 0 0 chr1 58687804 58687884 -138507548 + G-rich Low_complexity Low_complexity 5 84 0 4 1032 13141 122 48 66 chr1 58687884 58688442 -138506990 + ETnERV2-int LTR ERVK 1053 1580 -5826 4 1032 1143 82 0 0 chr1 58688442 58688589 -138506843 - B1_Mus1 SINE Alu 0 148 2 4 1032 13141 122 48 66 chr1 58688589 58689058 -138506374 + ETnERV2-int LTR ERVK 1581 2054 -5352 4 1032 418 17 34 0 chr1 58689058 58689117 -138506315 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1032 13141 122 48 66 chr1 58689117 58690367 -138505065 + ETnERV2-int LTR ERVK 2055 3287 -4119 4 1032 4798 53 3 3 chr1 58690367 58690954 -138504478 - LTRIS_Mus LTR ERV1 0 587 1 4 1032 13141 122 48 66 chr1 58690954 58691143 -138504289 + ETnERV2-int LTR ERVK 3288 3475 -3931 4 1032 3930 115 43 13 chr1 58691149 58691748 -138503684 + ETnERV2-int LTR ERVK 3670 4286 -1120 4 1032 1267 162 46 17 chr1 58691772 58692011 -138503421 + ETnERV3-int LTR ERVK 5533 5778 -30 4 1032 6484 93 34 11 chr1 58692024 58693019 -138502413 + RLTR13D5 LTR ERVK 1 1018 -5 4 1032 260 138 241 0 chr1 58693014 58693072 -138502360 + MTC LTR MaLR 43 114 -307 4 1032 660 26 0 0 chr1 58693072 58693150 -138502282 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 4 1032 1227 92 0 0 chr1 58693152 58693326 -138502106 - B2_Mm2 SINE B2 -21 174 1 4 1032 1180 161 90 22 chr1 58693327 58693594 -138501838 + MTC LTR MaLR 129 413 -8 4 1032 5959 136 31 8 chr1 58694196 58695173 -138500259 + Lx2 LINE L1 5996 6994 -3 4 1032 348 83 0 0 chr1 58695229 58695277 -138500155 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1032 1113 76 7 0 chr1 58695277 58695422 -138500010 - B1_Mus2 SINE Alu 0 147 2 4 1032 654 254 46 29 chr1 58695468 58695642 -138499790 + B3A SINE B2 5 181 -17 4 1032 213 316 11 0 chr1 58695781 58695840 -138499592 + (CATA)n Simple_repeat Simple_repeat 1 60 0 4 1032 261 0 0 0 chr1 58695840 58695869 -138499563 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1032 213 316 11 0 chr1 58695869 58695891 -138499541 + (CATA)n Simple_repeat Simple_repeat 1 22 0 4 1032 261 0 0 0 chr1 58695891 58695920 -138499512 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1032 213 316 11 0 chr1 58695920 58695932 -138499500 + (CATA)n Simple_repeat Simple_repeat 3 14 0 4 1032 593 200 0 62 chr1 58695943 58696071 -138499361 + PB1D9 SINE Alu 1 120 0 4 1032 800 190 0 7 chr1 58696401 58696544 -138498888 - B1_Mur3 SINE Alu -1 148 7 4 1032 1453 53 0 41 chr1 58696572 58696767 -138498665 - B2_Mm2 SINE B2 -8 187 1 4 1032 421 302 6 90 chr1 58697419 58697597 -138497835 - RSINE1 SINE B4 0 165 3 4 1032 2969 66 200 9 chr1 58697608 58698038 -138497394 + RLTR1B LTR ERV1 1 512 0 4 1032 48050 27 2 1 chr1 58698038 58703440 -138491992 + MMERGLN-int LTR ERV1 1 5408 -2148 4 1032 237 33 0 0 chr1 58704094 58704124 -138491308 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1032 19630 22 0 0 chr1 58705175 58707338 -138488094 + MMERGLN-int LTR ERV1 5394 7556 0 4 1032 3008 61 200 9 chr1 58707338 58707768 -138487664 + RLTR1B LTR ERV1 1 512 0 4 1032 2722 248 52 23 chr1 58707878 58708587 -138486845 + Lx7 LINE L1 6547 7276 -420 4 1032 4071 50 95 2 chr1 58708683 58709199 -138486233 - LTRIS2 LTR ERV1 0 564 1 4 1032 189 0 0 0 chr1 58709274 58709295 -138486137 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1032 593 261 28 7 chr1 58710058 58710201 -138485231 + RSINE1 SINE B4 3 148 -17 4 1032 22 0 0 0 chr1 58710214 58710236 -138485196 + AT_rich Low_complexity Low_complexity 1 22 0 4 1032 2702 37 3 0 chr1 58710888 58711210 -138484222 - L1Md_A LINE L1 0 6582 6260 4 1032 344 176 165 9 chr1 58712000 58712109 -138483323 - Lx9 LINE L1 -1 7643 7518 4 1032 387 0 0 0 chr1 58712109 58712152 -138483280 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1032 252 167 42 0 chr1 58712156 58712204 -138483228 - Lx9 LINE L1 -179 7465 7416 4 1032 233 319 3 5 chr1 58712211 58712309 -138483123 + Lx7 LINE L1 7233 7329 -144 4 1032 765 150 0 8 chr1 58712309 58712437 -138482995 + B1_Mus2 SINE Alu 20 146 -1 4 1032 648 262 32 60 chr1 58712866 58713118 -138482314 + B4A SINE B4 3 247 -45 4 1032 516 225 50 0 chr1 58713267 58713387 -138482045 + RSINE1 SINE B4 2 127 -38 5 1032 546 211 65 0 chr1 58713452 58713575 -138481857 + ID_B1 SINE B4 78 208 -16 5 1032 192 83 20 40 chr1 58714383 58714433 -138480999 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1032 237 229 68 68 chr1 58716437 58716540 -138478892 - RMER1C Other Other 0 1342 1240 5 1032 22 0 0 0 chr1 58716558 58716580 -138478852 + AT_rich Low_complexity Low_complexity 1 22 0 5 1032 708 271 0 74 chr1 58716580 58716783 -138478649 - B3A SINE B2 -10 188 1 5 1032 971 293 59 0 chr1 58716819 58717160 -138478272 + L1MC2 LINE L1 5912 6272 -72 5 1032 887 248 38 69 chr1 58717190 58717618 -138477814 + RMER19C LTR ERVK 53 450 -287 5 1032 1803 138 159 0 chr1 58717618 58717958 -138477474 + ORR1B1 LTR MaLR 1 394 0 5 1032 396 356 64 21 chr1 58718649 58718979 -138476453 + L1M4 LINE L1 4865 5208 -938 5 1032 1205 88 6 6 chr1 58719035 58719217 -138476215 - L1Md_F2 LINE L1 -1 6581 6400 5 1032 306 293 59 20 chr1 58719453 58719669 -138475763 + L1M4 LINE L1 5601 5823 -341 5 1 245 98 0 24 chr1 58720220 58720262 -138475170 + (GGGTG)n Simple_repeat Simple_repeat 3 43 0 5 1033 773 182 0 27 chr1 58720571 58720718 -138474714 - B1_Mur3 SINE Alu -1 148 6 5 1033 25 0 0 0 chr1 58720733 58720758 -138474674 + AT_rich Low_complexity Low_complexity 1 25 0 5 1033 1119 148 48 2 chr1 58721609 58721826 -138473606 + L1_Mus3 LINE L1 6398 6598 -40 5 1033 537 103 26 0 chr1 58721826 58721943 -138473489 + (TTTTTG)n Simple_repeat Simple_repeat 2 121 0 5 1033 1127 89 0 0 chr1 58721945 58722091 -138473341 - B1_Mm SINE Alu 0 147 2 5 1033 186 43 0 0 chr1 58722092 58722115 -138473317 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1033 301 42 0 0 chr1 58722122 58722170 -138473262 + L1_Mus4 LINE L1 6583 6630 -6 5 1033 417 271 169 18 chr1 58722500 58722725 -138472707 + LTR82A LTR ERVL 285 543 -329 5 1033 1068 241 112 11 chr1 58723165 58723513 -138471919 + MTD LTR MaLR 18 400 -19 5 1033 1422 219 122 3 chr1 58725047 58725409 -138470023 - MTD LTR MaLR -14 405 1 5 1033 257 275 44 0 chr1 58725445 58725536 -138469896 + L1M5 LINE L1 5545 5639 -485 5 1033 1066 204 0 5 chr1 58725802 58726014 -138469418 - B3 SINE B2 -5 211 1 5 1033 261 269 0 15 chr1 58727349 58727417 -138468015 + B4 SINE B4 11 77 -215 5 1033 348 214 0 73 chr1 58727508 58727700 -138467732 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 5 1033 801 214 0 0 chr1 58727703 58727977 -138467455 + (CA)n Simple_repeat Simple_repeat 1 274 0 5 1033 842 286 101 31 chr1 58728278 58728722 -138466710 + L1MC1 LINE L1 5847 6321 -12 5 1033 645 123 216 24 chr1 58728724 58728849 -138466583 + B1_Mur3 SINE Alu 1 149 0 5 1033 7803 90 22 10 chr1 58728958 58730773 -138464659 + L1VL2 LINE L1 1368 3662 -3672 5 1033 1771 276 28 75 chr1 58730846 58731715 -138463717 - L1_Rod LINE L1 -1222 4625 3798 5 1033 26 0 0 0 chr1 58731715 58731741 -138463691 + AT_rich Low_complexity Low_complexity 1 26 0 5 1033 260 324 61 35 chr1 58731778 58731893 -138463539 + B3 SINE B2 72 189 -27 5 1033 314 250 70 39 chr1 58731913 58732042 -138463390 + L1MA7 LINE L1 6112 6244 -47 5 1033 225 235 0 0 chr1 58732048 58732099 -138463333 - B3A SINE B2 -145 53 3 5 1033 344 77 0 19 chr1 58732222 58732275 -138463157 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 5 1033 434 259 154 5 chr1 58732411 58732620 -138462812 - L1MA9 LINE L1 -257 6034 5795 5 1033 748 20 20 0 chr1 58732976 58733074 -138462358 + (GGA)n Simple_repeat Simple_repeat 3 102 0 5 1033 198 71 0 0 chr1 58733967 58733995 -138461437 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 5 1033 807 186 11 28 chr1 58734508 58734685 -138460747 + B2_Mm2 SINE B2 1 174 -21 5 1033 898 276 39 18 chr1 58735732 58735961 -138459471 - B4A SINE B4 0 292 59 5 1033 529 244 38 15 chr1 58736021 58736154 -138459278 - B1_Mur2 SINE Alu 0 149 14 5 1033 1923 96 18 60 chr1 58736919 58737252 -138458180 + ORR1A4 LTR MaLR 3 321 -8 5 1033 218 167 0 0 chr1 58737537 58737579 -138457853 + MIR SINE MIR 104 145 -117 5 1033 5180 83 9 12 chr1 58737579 58738867 -138456565 + L1VL2 LINE L1 332 1613 -2002 5 1033 7067 107 16 54 chr1 58738867 58739337 -138456095 + Lx LINE L1 5325 5782 -101 5 1033 1171 68 0 0 chr1 58739337 58739484 -138455948 + B1_Mus2 SINE Alu 1 147 0 5 1033 7067 83 34 60 chr1 58739484 58740370 -138455062 + Lx LINE L1 5783 6653 -1 5 1033 195 204 0 0 chr1 58740370 58740414 -138455018 + GA-rich Low_complexity Low_complexity 1 44 0 5 1033 405 218 23 61 chr1 58740732 58740864 -138454568 + RMER17C LTR ERVK 2 128 -282 5 1033 1073 89 7 0 chr1 58740965 58741111 -138454321 - B1_Mus1 SINE Alu 0 148 2 5 1033 2188 182 21 46 chr1 58741147 58741578 -138453854 + RLTR9B2 LTR ERVK 1 420 0 5 1033 488 300 38 39 chr1 58741579 58742043 -138453389 + ETnERV-int LTR ERVK 2 621 -2693 5 1033 2358 232 10 0 chr1 58742041 58742520 -138452912 + ETnERV-int LTR ERVK 1092 1575 -1739 5 1033 290 286 52 0 chr1 58742512 58742589 -138452843 + ETnERV-int LTR ERVK 2224 2304 -5102 5 1033 14320 219 36 36 chr1 58742610 58746654 -138448778 + ETnERV2-int LTR ERVK 1605 6422 -984 5 1033 363 132 25 38 chr1 58746865 58746944 -138448488 + ETnERV2-int LTR ERVK 7327 7404 -2 5 1033 1945 186 38 49 chr1 58746945 58747370 -138448062 + RLTR9B2 LTR ERVK 1 420 0 5 1033 444 51 0 0 chr1 58748330 58748389 -138447043 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1033 459 0 0 0 chr1 58748868 58748919 -138446513 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1033 312 27 0 0 chr1 58749959 58749996 -138445436 + (CATA)n Simple_repeat Simple_repeat 4 40 0 5 1033 239 196 43 0 chr1 58750005 58750051 -138445381 + (CACG)n Simple_repeat Simple_repeat 4 51 0 5 1033 22 56 0 0 chr1 58750237 58750273 -138445159 + AT_rich Low_complexity Low_complexity 1 36 0 5 1033 1386 99 5 0 chr1 58750276 58750468 -138444964 + B2_Mm2 SINE B2 2 194 -1 5 1033 239 253 71 93 chr1 58750923 58750956 -138444476 - L1MC5 LINE L1 -28 7933 7901 5 1033 1493 18 12 6 chr1 58750956 58751115 -138444317 + B2_Mm1a SINE B2 2 160 -33 5 1033 340 19 38 19 chr1 58751115 58751168 -138444264 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 5 1033 1493 18 12 6 chr1 58751168 58751180 -138444252 + B2_Mm1a SINE B2 161 174 -19 5 1033 239 253 71 93 chr1 58751180 58751329 -138444103 - L1MC5 LINE L1 -61 7900 7755 5 1033 1193 74 0 0 chr1 58751390 58751538 -138443894 - B1_Mus1 SINE Alu 0 148 1 5 1033 429 287 14 58 chr1 58751567 58751774 -138443658 - B3A SINE B2 0 198 1 5 1033 619 215 0 9 chr1 58752106 58752329 -138443103 + (TG)n Simple_repeat Simple_repeat 1 220 0 5 1033 203 122 49 0 chr1 58753245 58753286 -138442146 + A-rich Low_complexity Low_complexity 3 45 0 5 1033 255 323 73 29 chr1 58753333 58753470 -138441962 - Charlie9 DNA MER1_type -2609 148 6 5 1033 687 88 3 3 chr1 58753599 58753711 -138441721 + B1_Mus2 SINE Alu 37 148 -1 5 1033 1093 50 50 0 chr1 58754839 58754979 -138440453 - B1_Mus2 SINE Alu 0 147 1 5 1033 677 221 52 0 chr1 58755922 58756058 -138439374 + B1_Mur3 SINE Alu 1 143 -6 5 1033 954 133 0 37 chr1 58756104 58756268 -138439164 - RMER6B LTR ERVK 0 461 304 5 1033 322 254 44 3 chr1 58756635 58756742 -138438690 - L1MA4 LINE L1 -8 6289 6170 5 1033 2303 165 41 15 chr1 58756784 58757251 -138438181 + RLTR11A2 LTR ERVK 8 486 -41 5 1033 212 229 71 32 chr1 58757251 58757377 -138438055 + (TTAA)n Simple_repeat Simple_repeat 2 132 0 5 1033 685 163 87 22 chr1 58757380 58757518 -138437914 - B1_Mur3 SINE Alu 0 149 3 5 1033 1670 233 22 10 chr1 58757574 58757977 -138437455 - MTD LTR MaLR -11 408 1 5 1033 443 268 39 0 chr1 58757977 58758104 -138437328 - L1MA4 LINE L1 -163 6137 6006 5 1033 414 69 0 0 chr1 58758573 58758631 -138436801 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1033 429 20 0 0 chr1 58758631 58758681 -138436751 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1033 810 301 68 21 chr1 58758693 58759032 -138436400 + L1MC4 LINE L1 6713 7067 -975 5 1033 268 203 86 14 chr1 58759531 58759601 -138435831 + MTC LTR MaLR 339 413 -8 5 1033 2311 4 4 0 chr1 58759730 58759992 -138435440 - L1_Mm LINE L1 -537 5346 5084 5 1033 1895 169 63 10 chr1 58759992 58760375 -138435057 + MTC LTR MaLR 11 413 -8 5 1033 2855 39 27 35 chr1 58760854 58761222 -138434210 + RLTR10B2 LTR ERVK 1 365 0 5 1033 3463 154 136 29 chr1 58761232 58762092 -138433340 + RLTR10-int LTR ERVK 41 992 -995 5 1033 519 326 30 30 chr1 58762142 58762512 -138432920 + RLTR10-int LTR ERVK 1197 1566 -6015 5 1033 1385 137 115 0 chr1 58762515 58762741 -138432691 + IAP-d-int LTR ERVK 5004 5255 -1287 5 1033 4365 132 22 3 chr1 58762744 58763418 -138432014 + IAPEY3-int LTR ERVK 6994 7680 0 5 1033 3189 25 0 8 chr1 58763418 58763786 -138431646 + RLTR10B2 LTR ERVK 1 365 0 5 1033 6184 121 33 7 chr1 58763927 58764902 -138430530 + Lx2 LINE L1 5998 6997 0 5 1033 630 250 44 50 chr1 58764996 58765154 -138430278 + B3A SINE B2 1 158 -40 5 1033 7511 93 7 16 chr1 58765154 58766187 -138429245 + RLTR13D5 LTR ERVK 1 1023 0 5 1033 630 250 44 50 chr1 58766187 58766209 -138429223 + B3A SINE B2 159 180 -18 5 1033 243 0 0 0 chr1 58766428 58766455 -138428977 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1033 270 0 0 0 chr1 58766455 58766484 -138428948 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1033 508 188 20 10 chr1 58766501 58766603 -138428829 + PB1D9 SINE Alu 13 115 -5 5 1033 243 242 240 40 chr1 58766502 58766627 -138428805 + B4A SINE B4 99 248 -44 5 1033 895 174 0 7 chr1 58766907 58767052 -138428380 - B1_Mur3 SINE Alu -1 148 5 5 1033 1482 56 6 0 chr1 58767082 58767262 -138428170 - B2_Mm2 SINE B2 -14 181 1 5 1033 192 77 0 0 chr1 58767753 58767779 -138427653 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1033 329 269 13 0 chr1 58767919 58767997 -138427435 - RSINE1 SINE B4 0 165 87 5 1033 705 24 0 0 chr1 58768961 58769044 -138426388 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1033 21 0 0 0 chr1 58769314 58769335 -138426097 + AT_rich Low_complexity Low_complexity 1 21 0 5 1033 542 237 7 61 chr1 58769335 58769483 -138425949 - B1_Mur4 SINE Alu 0 150 11 5 1033 234 274 23 35 chr1 58769491 58769578 -138425854 - RLTR14 LTR ERV1 0 382 297 5 1033 237 128 0 0 chr1 58769657 58769704 -138425728 + (G)n Simple_repeat Simple_repeat 1 47 0 6 1033 273 57 0 0 chr1 58770018 58770053 -138425379 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1033 21 0 0 0 chr1 58771113 58771134 -138424298 + AT_rich Low_complexity Low_complexity 1 21 0 6 1033 189 94 0 0 chr1 58771514 58771546 -138423886 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1033 315 49 0 0 chr1 58771664 58771705 -138423727 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1033 1223 34 0 20 chr1 58771873 58772023 -138423409 - B1_Mus2 SINE Alu 0 147 1 6 1033 515 242 53 8 chr1 58772034 58772167 -138423265 - B1F SINE Alu -8 141 3 6 1033 1443 49 21 21 chr1 58772204 58772393 -138423039 - B2_Mm2 SINE B2 -5 190 2 6 1033 198 0 0 0 chr1 58773665 58773687 -138421745 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1033 920 95 0 21 chr1 58773694 58773834 -138421598 - B1_Mus2 SINE Alu -1 146 10 6 1033 283 225 59 59 chr1 58773847 58773932 -138421500 - PB1D10 SINE Alu 0 117 33 6 1033 27 29 0 0 chr1 58774361 58774395 -138421037 + AT_rich Low_complexity Low_complexity 1 34 0 6 1033 665 202 16 0 chr1 58775042 58775166 -138420266 + B1_Mur2 SINE Alu 2 127 -22 6 1033 259 318 0 2 chr1 58776016 58776106 -138419326 - BC1_Mm scRNA scRNA -62 90 2 6 1033 526 212 60 8 chr1 58776117 58776250 -138419182 - B1F1 SINE Alu -9 140 1 6 1033 461 263 47 75 chr1 58778014 58778228 -138417204 - L1MA9 LINE L1 -303 6009 5802 6 1033 441 0 0 0 chr1 58778228 58778277 -138417155 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1033 455 248 189 0 chr1 58778277 58778359 -138417073 - L1MA9 LINE L1 -490 5801 5688 6 1033 708 230 20 0 chr1 58778395 58778547 -138416885 - B3 SINE B2 -24 192 38 6 1033 760 137 38 15 chr1 58778928 58779061 -138416371 + B1_Mur3 SINE Alu 1 136 -13 6 1033 605 260 53 28 chr1 58779890 58780175 -138415257 - RLTR15 LTR ERVK -65 294 3 6 1033 500 263 85 30 chr1 58780175 58780374 -138415058 + ID_B1 SINE B4 12 221 -3 6 1033 585 165 34 25 chr1 58780262 58780380 -138415052 + B1_Mur2 SINE Alu 31 149 0 6 1033 645 208 114 45 chr1 58780813 58781014 -138414418 - B3 SINE B2 0 216 2 6 1033 246 132 0 0 chr1 58781389 58781442 -138413990 + (C)n Simple_repeat Simple_repeat 1 53 0 6 1033 532 133 174 0 chr1 58782174 58782272 -138413160 + RSINE1 SINE B4 3 117 -48 6 1033 437 160 0 13 chr1 58783742 58783818 -138411614 - B1F SINE Alu -29 120 46 6 1033 377 247 39 21 chr1 58784586 58784690 -138410742 + PB1D10 SINE Alu 11 116 -33 6 1033 249 239 30 0 chr1 58784706 58784773 -138410659 + ID4 SINE ID 6 74 -9 6 1033 640 267 7 0 chr1 58785539 58785685 -138409747 + B1_Mur1 SINE Alu 2 148 -1 6 1033 3560 18 2 0 chr1 58787192 58787587 -138407845 + MTA_Mm LTR MaLR 1 396 0 6 1033 792 241 39 24 chr1 58787613 58787821 -138407611 - ID_B1 SINE B4 -13 211 1 6 1033 411 73 0 0 chr1 58788757 58788812 -138406620 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1033 282 256 233 0 chr1 58788844 58788930 -138406502 - RSINE1 SINE B4 -57 108 3 6 1033 513 223 9 28 chr1 58789839 58789945 -138405487 - B1F SINE Alu -5 144 41 6 1033 257 309 40 16 chr1 58789958 58790083 -138405349 - L1M5 LINE L1 -322 5802 5675 6 1033 784 245 69 0 chr1 58790178 58790366 -138405066 - B3 SINE B2 -15 201 1 6 1033 684 208 173 0 chr1 58791820 58791993 -138403439 + B3 SINE B2 4 206 -10 6 1033 384 310 48 62 chr1 58792613 58792840 -138402592 + ID_B1 SINE B4 1 224 0 6 1033 186 133 0 0 chr1 58793301 58793331 -138402101 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1033 501 311 15 0 chr1 58793344 58793479 -138401953 - B1F1 SINE Alu -12 137 1 6 1033 1227 74 60 33 chr1 58793489 58793671 -138401761 - B2_Mm2 SINE B2 -7 188 2 6 1033 827 281 47 0 chr1 58794886 58795121 -138400311 - MER2 DNA MER2_type 0 345 100 6 1033 513 257 12 50 chr1 58795366 58795385 -138400047 + ID_B1 SINE B4 65 218 -6 6 1033 944 121 0 0 chr1 58795385 58795526 -138399906 + B1_Mus1 SINE Alu 2 142 -6 6 1033 281 26 26 0 chr1 58795530 58795568 -138399864 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1033 941 266 29 8 chr1 58795687 58795926 -138399506 + B4A SINE B4 3 246 -46 6 1033 687 109 43 0 chr1 58795934 58796072 -138399360 + GA-rich Low_complexity Low_complexity 1 144 0 6 1033 235 175 35 0 chr1 58796171 58796228 -138399204 + GA-rich Low_complexity Low_complexity 3 61 0 6 1033 340 270 54 0 chr1 58796238 58796349 -138399083 + PB1D10 SINE Alu 1 117 0 6 1033 483 354 121 12 chr1 58798002 58798325 -138397107 - MLT1J2 LTR MaLR -70 378 21 6 1033 1723 133 87 52 chr1 58798963 58799336 -138396096 + ORR1C2 LTR MaLR 1 419 -2 6 1033 180 298 199 28 chr1 58799674 58799850 -138395582 + MIR SINE MIR 21 226 -36 6 1033 354 23 0 0 chr1 58800149 58800192 -138395240 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 6 1033 22 0 0 0 chr1 58800719 58800741 -138394691 + AT_rich Low_complexity Low_complexity 1 22 0 6 1033 662 171 317 0 chr1 58800741 58800905 -138394527 - B3 SINE B2 0 216 1 6 1033 246 62 0 0 chr1 58801363 58801395 -138394037 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1033 933 131 0 28 chr1 58801395 58801536 -138393896 - B1_Mur4 SINE Alu -12 138 2 6 1033 249 57 0 0 chr1 58802183 58802218 -138393214 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1033 755 97 9 0 chr1 58802255 58802369 -138393063 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 6 1033 324 314 84 13 chr1 58802385 58802540 -138392892 + B4A SINE B4 11 176 -116 6 1033 235 188 179 45 chr1 58803340 58803407 -138392025 - MIRb SINE MIR -103 165 90 6 1033 337 273 89 71 chr1 58804784 58805009 -138390423 - MLT1F LTR MaLR -1 547 319 6 1033 2465 90 3 9 chr1 58806360 58806697 -138388735 - IAPLTR1a_Mm LTR ERVK -2 335 1 6 1033 14465 66 13 3 chr1 58806699 58808504 -138386928 - IAPEz-int LTR ERVK -2 6479 4656 6 1033 1891 98 0 0 chr1 58808503 58808749 -138386683 - IAPEY3-int LTR ERVK -5183 2497 2252 6 1033 771 54 0 0 chr1 58808750 58808843 -138386589 - IAPEY3-int LTR ERVK -5004 1477 1385 6 1033 347 77 0 0 chr1 58808846 58808898 -138386534 - IAPLTR1a_Mm LTR ERVK -285 52 1 6 1033 356 196 58 74 chr1 58809907 58810028 -138385404 + Tigger7 DNA MER2_type 2340 2458 -33 6 1033 1643 199 170 60 chr1 58811378 58811872 -138383560 + RMER1B Other Other 393 918 -148 6 1033 260 27 27 0 chr1 58811872 58811909 -138383523 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 6 1033 1643 199 170 60 chr1 58811909 58812019 -138383413 + RMER1B Other Other 919 1063 -3 6 1033 21 0 0 0 chr1 58812087 58812108 -138383324 + AT_rich Low_complexity Low_complexity 1 21 0 6 1033 682 208 156 6 chr1 58812385 58812564 -138382868 + Lx7 LINE L1 6941 7146 -550 6 1033 758 214 45 0 chr1 58812576 58812754 -138382678 + RLTR18B LTR ERVK 16 201 -311 6 1033 1247 242 45 13 chr1 58812795 58813105 -138382327 + RLTR18B LTR ERVK 188 507 -5 6 1033 245 298 56 40 chr1 58813122 58813248 -138382184 + Lx8 LINE L1 7198 7325 -148 6 1033 705 97 0 0 chr1 58813267 58813370 -138382062 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 6 1033 650 27 1 0 chr1 58813378 58813462 -138381970 - B1_Mm SINE Alu 0 148 62 6 1033 225 0 0 0 chr1 58813462 58813487 -138381945 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1033 623 130 37 9 chr1 58813487 58813511 -138381921 - B1_Mus1 SINE Alu -87 61 37 6 1033 1667 31 5 0 chr1 58813992 58814183 -138381249 + B2_Mm1a SINE B2 1 192 -1 6 1033 543 175 126 55 chr1 58814542 58814669 -138380763 + ORR1D2 LTR MaLR 37 172 -198 6 1033 25 31 0 0 chr1 58814710 58814742 -138380690 + AT_rich Low_complexity Low_complexity 1 32 0 6 1033 228 135 0 0 chr1 58814934 58814971 -138380461 + B1F SINE Alu 48 84 -65 6 1033 278 227 145 72 chr1 58815059 58815211 -138380221 + RSINE1 SINE B4 3 165 0 6 1033 422 282 118 4 chr1 58815252 58815522 -138379910 - L1MC LINE L1 -1116 5030 4730 6 1033 498 33 0 0 chr1 58816035 58816095 -138379337 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1033 383 340 108 21 chr1 58816298 58816676 -138378756 - L1MA4 LINE L1 -292 6008 5598 6 1033 1358 196 21 35 chr1 58816842 58817132 -138378300 - Lx9 LINE L1 -659 6985 6700 6 1033 895 223 9 58 chr1 58817131 58817355 -138378077 + Lx9 LINE L1 7000 7212 -432 6 1033 3503 81 26 15 chr1 58817359 58817888 -138377544 + MT2B2 LTR ERVL 1 535 -49 6 1033 464 79 14 19 chr1 58817911 58817992 -138377440 - B1_Mus2 SINE Alu -1 146 42 6 1033 471 35 0 0 chr1 58818011 58818068 -138377364 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1033 2584 133 20 10 chr1 58818715 58819111 -138376321 - RLTR9D LTR ERVK -3 400 1 6 1033 14983 160 9 18 chr1 58819396 58820122 -138375310 - ETnERV2-int LTR ERVK -981 6425 5779 6 1033 1586 42 0 20 chr1 58820122 58820318 -138375114 - B2_Mm1a SINE B2 -1 192 1 6 1033 14983 231 34 32 chr1 58820318 58824005 -138371427 - ETnERV2-int LTR ERVK -1628 5778 1282 6 1033 4479 18 0 0 chr1 58824005 58824498 -138370934 - MT2_Mm LTR ERVL 0 493 1 6 1033 6550 223 17 22 chr1 58824498 58825845 -138369587 - ETnERV2-int LTR ERVK -1901 1413 3 6 1033 2331 148 38 23 chr1 58825853 58826247 -138369185 - RLTR9D LTR ERVK -3 400 1 6 1033 1301 71 16 0 chr1 58826389 58826573 -138368859 + B2_Mm2 SINE B2 9 195 0 6 1033 493 298 13 7 chr1 58826652 58826804 -138368628 + B4A SINE B4 35 187 -105 6 1033 241 235 0 29 chr1 58826917 58826987 -138368445 - L1MD LINE L1 -3257 2889 2822 6 1033 203 0 0 36 chr1 58827151 58827179 -138368253 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 6 1033 518 203 32 77 chr1 58827269 58827424 -138368008 - B1_Mus1 SINE Alu 0 148 1 6 1033 996 225 9 9 chr1 58827544 58827755 -138367677 - B3 SINE B2 -5 211 1 6 1033 387 0 0 0 chr1 58827839 58827882 -138367550 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1033 274 302 74 67 chr1 58828068 58828217 -138367215 - MER21B LTR ERV1 -371 492 343 6 1033 276 209 0 0 chr1 58828231 58828317 -138367115 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1033 795 160 0 0 chr1 58828331 58828685 -138366747 + (TG)n Simple_repeat Simple_repeat 1 354 0 6 1033 873 145 0 0 chr1 58828720 58828899 -138366533 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1033 837 242 41 58 chr1 58828902 58828934 -138366498 - B4A SINE B4 0 292 271 7 1033 303 96 0 0 chr1 58828934 58828986 -138366446 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1033 837 242 41 58 chr1 58828986 58829247 -138366185 - B4A SINE B4 -22 270 4 7 1033 714 188 27 27 chr1 58829497 58829645 -138365787 - B1_Mur2 SINE Alu -1 148 1 7 1033 471 18 0 0 chr1 58829750 58829806 -138365626 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1033 246 355 0 0 chr1 58830043 58830119 -138365313 + ID4_ SINE ID 8 83 0 7 1033 1804 114 98 71 chr1 58830102 58830470 -138364962 - ORR1B1 LTR MaLR -16 378 1 7 1033 231 161 0 0 chr1 58830484 58830540 -138364892 + A-rich Low_complexity Low_complexity 1 56 0 7 1033 1121 222 86 27 chr1 58831388 58831726 -138363706 + ORR1D2 LTR MaLR 1 358 -12 7 1033 817 155 10 5 chr1 58831910 58832115 -138363317 + CT-rich Low_complexity Low_complexity 1 206 0 7 1033 922 119 0 77 chr1 58832117 58832272 -138363160 - B1_Mur3 SINE Alu -6 143 1 7 1033 8119 78 10 16 chr1 58832380 58834046 -138361386 + L1Md_A LINE L1 630 2281 -3602 7 1033 999 246 126 13 chr1 58834047 58834364 -138361068 + RMER15-int LTR ERVL 2047 2399 -2600 7 1033 268 180 0 116 chr1 58834350 58834419 -138361013 + RMER15-int LTR ERVL 4033 4093 -906 7 1033 1295 217 96 3 chr1 58834477 58834791 -138360641 + RMER15 LTR ERVL 233 575 0 7 1033 604 281 48 10 chr1 58835025 58835233 -138360199 + L1MB1 LINE L1 5943 6158 -10 7 1033 364 338 66 110 chr1 58835272 58835545 -138359887 + B4A SINE B4 5 265 -27 7 1033 268 326 104 72 chr1 58835929 58836207 -138359225 + B4 SINE B4 1 287 -5 7 1033 23643 151 8 14 chr1 58836445 58841192 -138354240 + L1VL4 LINE L1 593 5311 -572 7 1033 6520 71 14 3 chr1 58841194 58842056 -138353376 + L1_Mus4 LINE L1 5766 6636 0 7 1033 513 0 0 0 chr1 58842564 58842621 -138352811 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1033 5660 204 91 77 chr1 58842621 58844137 -138351295 + Lx9 LINE L1 5864 7533 -111 7 1033 676 206 27 16 chr1 58844137 58844320 -138351112 - Lx2B LINE L1 0 7000 6816 7 1033 5660 195 92 82 chr1 58844320 58844448 -138350984 + Lx9 LINE L1 7534 7644 0 7 1033 511 200 27 118 chr1 58844673 58844860 -138350572 - MER76 LTR ERVL -478 213 44 7 1033 564 341 74 41 chr1 58844912 58844996 -138350436 - MER76-int LTR ERVL -15 6174 6084 7 1033 1075 222 109 79 chr1 58844996 58845363 -138350069 - MTE2b LTR MaLR -1 378 1 7 1033 564 341 74 41 chr1 58845363 58845697 -138349735 - MER76-int LTR ERVL -106 6083 5742 7 1033 1630 215 59 40 chr1 58845902 58846263 -138349169 + L1_Mur2 LINE L1 813 1184 -6544 7 1033 1572 37 21 0 chr1 58846263 58846452 -138348980 + B2_Mm1a SINE B2 1 193 0 7 1033 13588 166 50 164 chr1 58846452 58847340 -138348092 + L1_Mur2 LINE L1 1120 2055 -3825 7 1033 327 113 0 0 chr1 58847340 58847393 -138348039 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1033 13588 164 48 177 chr1 58847393 58849237 -138346195 + L1_Mur2 LINE L1 2056 3669 -2211 7 1033 300 270 39 94 chr1 58849237 58849417 -138346015 - RMER2 LTR ERV1 -31 536 367 7 1033 13588 164 48 177 chr1 58849417 58850950 -138344482 + L1_Mur2 LINE L1 3670 5013 -867 7 129 1682 236 119 129 chr1 58850923 58851965 -138343467 + Lx5 LINE L1 5706 6737 -313 7 1034 405 0 0 0 chr1 58852024 58852069 -138343363 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1034 297 240 16 16 chr1 58852864 58852987 -138342445 + CT-rich Low_complexity Low_complexity 4 126 0 7 1034 271 152 85 0 chr1 58853010 58853069 -138342363 - PB1D10 SINE Alu -32 85 22 7 1034 1026 118 0 22 chr1 58853282 58853464 -138341968 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 7 1034 704 202 70 30 chr1 58853558 58853757 -138341675 - B3 SINE B2 0 216 10 7 1034 234 150 0 0 chr1 58854075 58854115 -138341317 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1034 386 84 0 27 chr1 58854894 58854967 -138340465 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 7 1034 596 276 40 60 chr1 58855114 58855445 -138339987 - L1_Mur3 LINE L1 -2424 3423 3086 7 1034 1624 151 152 29 chr1 58855445 58855787 -138339645 - ORR1C2 LTR MaLR 0 384 1 7 1034 596 275 40 56 chr1 58855787 58855882 -138339550 - L1_Mur3 LINE L1 -2795 3085 2994 7 1034 262 204 0 20 chr1 58855956 58856006 -138339426 - RSINE1 SINE B4 -115 50 2 7 1034 991 189 30 50 chr1 58856042 58856243 -138339189 - B3A SINE B2 -1 197 1 7 1034 1434 289 85 67 chr1 58856243 58857059 -138338373 - L1_Mur3 LINE L1 -2872 3008 2179 7 1034 671 273 21 15 chr1 58857155 58857395 -138338037 + Lx8 LINE L1 5076 5316 -567 7 1034 281 254 14 131 chr1 58857396 58857541 -138337891 + RSINE1 SINE B4 6 133 -32 7 1034 297 314 24 8 chr1 58857597 58857722 -138337710 + L1M1 LINE L1 5364 5490 -807 7 1034 1469 48 16 21 chr1 58857723 58857913 -138337519 + B2_Mm1a SINE B2 1 189 -4 7 1034 379 42 0 0 chr1 58858055 58858103 -138337329 - L1_Mus1 LINE L1 -6 6561 6514 7 1034 26 64 0 0 chr1 58858441 58858488 -138336944 + AT_rich Low_complexity Low_complexity 1 47 0 7 1034 578 239 120 78 chr1 58858501 58858759 -138336673 + L1M1 LINE L1 5525 5793 -510 7 1034 447 201 0 0 chr1 58858759 58858903 -138336529 + (CA)n Simple_repeat Simple_repeat 1 144 0 7 1034 760 192 14 14 chr1 58858930 58859078 -138336354 + B1_Mus1 SINE Alu 1 148 0 7 1034 310 262 36 0 chr1 58859113 58859197 -138336235 + Lx8 LINE L1 5820 5906 -1567 7 1034 313 236 28 0 chr1 58859927 58859999 -138335433 - ID4 SINE ID -7 76 3 7 1034 21 57 0 0 chr1 58861139 58861174 -138334258 + AT_rich Low_complexity Low_complexity 1 35 0 7 1034 24 0 0 0 chr1 58861225 58861249 -138334183 + AT_rich Low_complexity Low_complexity 1 24 0 7 1034 1101 16 0 0 chr1 58861375 58861502 -138333930 + (TTTTC)n Simple_repeat Simple_repeat 4 130 0 7 1034 753 50 49 21 chr1 58862127 58862270 -138333162 + RMER17B LTR ERVK 310 456 -502 7 1034 1255 110 16 5 chr1 58862612 58862804 -138332628 - B2_Mm2 SINE B2 0 195 2 7 1034 1859 141 12 19 chr1 58863054 58863349 -138332083 - L1_Mur2 LINE L1 -1239 4638 4344 7 1034 1032 132 0 0 chr1 58863349 58863515 -138331917 + (TTCTC)n Simple_repeat Simple_repeat 5 170 0 7 1034 1859 141 12 19 chr1 58863515 58863538 -138331894 - L1_Mur2 LINE L1 -1534 4343 4322 7 1034 233 331 104 32 chr1 58863818 58863943 -138331489 + RSINE1 SINE B4 28 161 -4 7 1034 315 0 0 0 chr1 58863943 58863978 -138331454 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1034 281 218 64 0 chr1 58864162 58864272 -138331160 + CT-rich Low_complexity Low_complexity 4 120 0 7 1034 559 291 111 82 chr1 58864519 58864923 -138330509 - RMER13A LTR ERVK -412 448 33 7 1034 815 226 13 32 chr1 58864974 58865211 -138330221 - RLTR12B LTR ERVK -263 265 56 7 1034 13518 166 25 70 chr1 58865213 58865441 -138329991 - L1_Mur2 LINE L1 -979 4898 4685 7 1034 1198 55 0 0 chr1 58865441 58865586 -138329846 + B1_Mus2 SINE Alu 2 146 -1 7 1034 13518 166 25 70 chr1 58865586 58865817 -138329615 - L1_Mur2 LINE L1 -1193 4684 4529 7 1034 1144 82 0 0 chr1 58865817 58865964 -138329468 - B1_Mus1 SINE Alu 0 148 2 7 1034 13518 166 25 70 chr1 58865964 58866213 -138329219 - L1_Mur2 LINE L1 -1349 4528 4279 7 1034 201 74 0 0 chr1 58866213 58866240 -138329192 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1034 13518 166 25 70 chr1 58866240 58868494 -138326938 - L1_Mur2 LINE L1 -1599 4278 2066 7 1034 252 0 0 0 chr1 58868506 58868534 -138326898 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1034 2989 18 0 0 chr1 58868534 58868868 -138326564 - IAPLTR1a_Mm LTR ERVK -3 334 1 7 1034 56997 22 8 11 chr1 58868868 58875365 -138320067 - IAPEz-int LTR ERVK 0 6481 8 7 1034 3021 18 0 0 chr1 58875365 58875702 -138319730 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1034 1807 186 18 20 chr1 58875705 58876099 -138319333 - L1_Mur2 LINE L1 -3812 2068 1676 7 1034 818 159 0 21 chr1 58876117 58876258 -138319174 - B1_Mus2 SINE Alu -1 146 9 7 1034 211 205 0 35 chr1 58876281 58876293 -138319139 + A-rich Low_complexity Low_complexity 2 13 0 7 1034 1080 116 0 0 chr1 58876293 58876440 -138318992 + B1_Mus2 SINE Alu 1 147 0 7 1034 211 205 0 35 chr1 58876440 58876513 -138318919 + A-rich Low_complexity Low_complexity 14 84 0 7 1034 1679 164 180 11 chr1 58876522 58876899 -138318533 - BGLII_B LTR ERVK 0 441 1 7 1034 9696 206 70 40 chr1 58876899 58879821 -138315611 - MYSERV16_I-int LTR ERVK 0 2326 5 7 1034 1183 212 112 10 chr1 58879821 58880117 -138315315 + MTD LTR MaLR 94 419 0 7 1034 1099 242 85 54 chr1 58881350 58881704 -138313728 - ORR1D2 LTR MaLR -5 365 1 7 1034 777 267 11 0 chr1 58881786 58881973 -138313459 - B3 SINE B2 0 216 28 7 1034 2917 153 100 47 chr1 58881994 58882585 -138312847 - Lx5 LINE L1 0 7050 6429 7 1034 662 92 131 10 chr1 58883223 58883322 -138312110 + Lx5 LINE L1 6246 6356 -694 7 1034 234 0 0 0 chr1 58883645 58883671 -138311761 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1034 465 263 202 39 chr1 58884253 58884312 -138311120 - ID_B1 SINE B4 -2 222 170 7 1034 2160 110 24 54 chr1 58884312 58884648 -138310784 - ORR1A2 LTR MaLR 0 327 2 7 1034 465 263 202 39 chr1 58884648 58884766 -138310666 - ID_B1 SINE B4 -55 169 16 7 1034 263 279 39 13 chr1 58885011 58885167 -138310265 + (TG)n Simple_repeat Simple_repeat 2 161 0 7 1034 603 0 0 0 chr1 58886246 58886313 -138309119 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 7 1034 590 207 18 0 chr1 58886313 58886424 -138309008 - B1_Mur2 SINE Alu -12 137 25 7 1034 2079 131 83 6 chr1 58886685 58887045 -138308387 - ORR1B1 LTR MaLR 0 394 7 7 1034 741 151 15 31 chr1 58887048 58887178 -138308254 - B1_Mur1 SINE Alu -21 128 1 7 1034 827 228 24 63 chr1 58887198 58887404 -138308028 - B3A SINE B2 0 198 1 7 1034 819 199 63 24 chr1 58887582 58887788 -138307644 - B3 SINE B2 0 216 3 7 1034 413 324 26 46 chr1 58888060 58888212 -138307220 + RSINE1 SINE B4 2 150 -15 7 1034 182 62 31 0 chr1 58888223 58888255 -138307177 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1034 441 54 0 0 chr1 58888283 58888339 -138307093 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1034 383 29 73 0 chr1 58888628 58888696 -138306736 + (CAAAA)n Simple_repeat Simple_repeat 2 74 0 7 1034 312 288 114 36 chr1 58888733 58888755 -138306677 + YREP_Mm Unknown Unknown 137 247 -1565 7 1034 684 209 0 30 chr1 58888755 58888888 -138306544 - ID_B1 SINE B4 -1 223 95 7 1034 312 288 114 36 chr1 58888888 58888899 -138306533 + YREP_Mm Unknown Unknown 248 315 -1497 7 1034 1107 95 41 1 chr1 58889761 58889943 -138305489 - B2_Mm2 SINE B2 -7 209 1 7 1034 297 0 0 0 chr1 58890713 58890746 -138304686 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 1034 22202 89 5 2 chr1 58890787 58894556 -138300876 - L1_Mus2 LINE L1 -1 6565 2786 7 1034 1217 49 0 0 chr1 58894565 58894707 -138300725 - B1_Mus1 SINE Alu -6 142 1 7 1034 18422 136 58 13 chr1 58894732 58897305 -138298127 - L1_Mur2 LINE L1 -1177 4700 2057 7 1034 213 39 0 0 chr1 58897305 58897331 -138298101 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1034 18422 150 57 15 chr1 58897331 58898356 -138297076 - L1_Mur2 LINE L1 -3821 2056 891 7 1034 3907 97 22 2 chr1 58898872 58899407 -138296025 - Lx3_Mus LINE L1 0 7009 6464 7 1034 25 0 0 0 chr1 58899450 58899475 -138295957 + AT_rich Low_complexity Low_complexity 1 25 0 7 1034 255 79 0 0 chr1 58899476 58899514 -138295918 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1034 435 125 0 0 chr1 58899521 58899593 -138295839 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1034 349 143 0 0 chr1 58899619 58899675 -138295757 - B3A SINE B2 -141 57 2 8 1034 1237 48 0 0 chr1 58899954 58900100 -138295332 + B1_Mus2 SINE Alu 2 147 0 8 1034 994 96 51 0 chr1 58900114 58900270 -138295162 + B2_Mm2 SINE B2 1 164 -31 8 1034 724 93 17 17 chr1 58900290 58900410 -138295022 - RLTR15 LTR ERVK -239 120 1 8 1034 659 214 172 6 chr1 58900410 58900583 -138294849 + B3 SINE B2 12 213 -3 8 1034 322 270 126 20 chr1 58900839 58900990 -138294442 + HAL1 LINE L1 1462 1628 -879 8 1034 559 275 28 7 chr1 58902122 58902265 -138293167 + RSINE1 SINE B4 3 148 -17 8 1034 253 196 165 10 chr1 58903683 58903786 -138291646 - Lx9 LINE L1 -8 7636 7518 8 1034 309 51 0 0 chr1 58903786 58903825 -138291607 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1034 764 156 0 8 chr1 58903976 58904105 -138291327 + B1_Mus2 SINE Alu 20 147 0 8 1034 654 286 16 47 chr1 58904546 58904799 -138290633 + B4A SINE B4 3 247 -45 8 1034 564 240 8 0 chr1 58904948 58905073 -138290359 + RSINE1 SINE B4 2 127 -38 8 1034 383 240 80 0 chr1 58905138 58905238 -138290194 + ID_B1 SINE B4 78 185 -39 8 1034 237 229 68 68 chr1 58908100 58908203 -138287229 - RMER1C Other Other 0 1342 1240 8 1034 425 289 14 118 chr1 58908215 58908244 -138287188 - B2_Mm2 SINE B2 -5 190 162 8 1034 453 116 0 0 chr1 58908244 58908313 -138287119 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1034 769 286 1 9 chr1 58908313 58908495 -138286937 - B3A SINE B2 -23 175 1 8 1034 195 42 0 0 chr1 58908530 58908554 -138286878 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1034 1072 95 0 0 chr1 58908554 58908691 -138286741 - B1_Mus2 SINE Alu -10 137 1 8 1034 804 287 100 3 chr1 58908706 58909035 -138286397 + L1MC2 LINE L1 5912 6272 -72 8 1034 309 141 30 0 chr1 58909052 58909114 -138286318 + RMER19C LTR ERVK 6 102 -509 8 1034 687 204 15 0 chr1 58909704 58909836 -138285596 + B1_Mur1 SINE Alu 7 140 -9 8 1034 219 352 11 0 chr1 58910183 58910271 -138285161 - L2a LINE L2 -18 3408 3320 8 1034 193 346 125 17 chr1 58910288 58910585 -138284847 - L2a LINE L2 -179 3247 2919 8 1034 540 296 188 7 chr1 58910604 58910880 -138284552 + L1MEc LINE L1 528 853 -5547 8 1034 1888 119 149 0 chr1 58911309 58911652 -138283780 + ORR1B1 LTR MaLR 1 394 0 8 1034 25 0 0 0 chr1 58912181 58912206 -138283226 + AT_rich Low_complexity Low_complexity 1 25 0 8 1034 306 314 80 33 chr1 58912327 58912654 -138282778 + L1MEc LINE L1 5038 5381 -938 8 1034 318 327 35 18 chr1 58912996 58913167 -138282265 + L1MEc LINE L1 5823 5996 -341 8 1034 184 122 0 47 chr1 58913733 58913776 -138281656 + (GGGTG)n Simple_repeat Simple_repeat 3 43 0 8 1034 766 179 8 0 chr1 58914094 58914228 -138281204 - B1_Mur3 SINE Alu -9 140 6 8 1034 26 0 0 0 chr1 58914241 58914267 -138281165 + AT_rich Low_complexity Low_complexity 1 26 0 8 1034 1568 89 16 29 chr1 58915133 58915369 -138280063 + L1_Mus3 LINE L1 6398 6631 -7 8 1034 1124 95 0 0 chr1 58915369 58915517 -138279915 + B1_Mus1 SINE Alu 1 148 0 8 1034 4503 112 25 62 chr1 58915997 58916836 -138278596 + RMER17D2 LTR ERVK 1 808 -1 8 1034 907 228 51 42 chr1 58916896 58917215 -138278217 + RLTR1B LTR ERV1 62 393 -110 8 1034 458 267 34 8 chr1 58918246 58918363 -138277069 + RSINE1 SINE B4 10 129 -36 8 1034 270 304 0 0 chr1 58918409 58918567 -138276865 + (CA)n Simple_repeat Simple_repeat 1 158 0 8 1034 276 152 0 0 chr1 58918566 58918632 -138276800 + (TA)n Simple_repeat Simple_repeat 2 67 0 8 1034 438 256 0 0 chr1 58918655 58918835 -138276597 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1034 243 88 0 0 chr1 58918849 58918883 -138276549 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1034 518 277 105 50 chr1 58919159 58919501 -138275931 + L1MC1 LINE L1 5832 6192 -141 8 1034 4980 135 96 4 chr1 58919514 58920424 -138275008 + L1_Mm LINE L1 1267 2259 -3624 8 1034 1199 68 0 0 chr1 58920561 58920708 -138274724 - B1_Mm SINE Alu 0 147 1 8 1034 368 244 123 16 chr1 58920719 58920913 -138274519 - L1MA9 LINE L1 -402 5898 5676 8 1034 354 49 49 0 chr1 58921178 58921239 -138274193 + (GGA)n Simple_repeat Simple_repeat 3 66 0 8 1034 184 211 92 66 chr1 58921664 58921740 -138273692 - L4 LINE RTE -787 1242 1165 8 1034 2278 174 133 27 chr1 58922416 58922943 -138272489 + RMER16-int LTR ERVK 237 819 -4587 8 1034 680 175 25 0 chr1 58922948 58923068 -138272364 + RMER16-int LTR ERVK 938 1060 -5077 8 1034 10666 165 56 65 chr1 58923081 58923696 -138271736 + ETnERV2-int LTR ERVK 2934 4046 -3198 8 1034 3309 26 37 0 chr1 58923696 58924078 -138271354 - MTA_Mm LTR MaLR 0 396 1 8 1034 10666 138 30 9 chr1 58924078 58925477 -138269955 + ETnERV2-int LTR ERVK 3247 4679 -2727 8 1034 576 15 0 0 chr1 58925475 58925540 -138269892 + ETnERV2-int LTR ERVK 5356 5420 -1986 8 1034 5704 83 14 25 chr1 58925541 58926358 -138269074 + L1Md_F2 LINE L1 281 1088 -5434 8 1034 8818 57 0 1 chr1 58926336 58927422 -138268010 + L1Md_F2 LINE L1 4505 5589 -297 8 1034 8254 47 1 2 chr1 58927422 58928419 -138267013 + L1Md_F2 LINE L1 5590 6585 0 8 1034 2843 67 0 0 chr1 58928449 58928806 -138266626 + ETnERV2-int LTR ERVK 5406 5762 -1644 8 1034 6098 176 75 54 chr1 58928796 58929187 -138266245 + ETnERV3-int LTR ERVK 3907 4326 -1482 8 1034 3515 18 2 10 chr1 58929187 58929586 -138265846 - MTA_Mm LTR MaLR 0 396 1 8 1034 6098 176 75 54 chr1 58929586 58930645 -138264787 + ETnERV3-int LTR ERVK 4327 5388 -420 8 1034 1137 62 0 0 chr1 58930670 58930830 -138264602 + RLTR13D5 LTR ERVK 291 450 -573 8 1034 296 259 0 0 chr1 58930897 58930978 -138264454 + RNERVK23-int LTR ERVK 6808 6888 -1329 8 1034 394 290 42 24 chr1 58931109 58931275 -138264157 + ETnERV3-int LTR ERVK 6356 6524 -720 8 1034 568 305 13 0 chr1 58931318 58931469 -138263963 + ETnERV3-int LTR ERVK 6494 6646 -760 8 1034 405 39 0 0 chr1 58933804 58933855 -138261577 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1034 192 152 0 0 chr1 58933857 58933890 -138261542 + (CACG)n Simple_repeat Simple_repeat 3 35 0 8 1034 837 277 43 10 chr1 58933895 58934103 -138261329 - B4A SINE B4 -20 272 58 8 1034 490 259 37 22 chr1 58934164 58934298 -138261134 - B1_Mur2 SINE Alu 0 149 14 8 1034 2032 106 3 50 chr1 58935069 58935406 -138260026 + ORR1A4 LTR MaLR 1 321 -8 8 1034 221 261 46 0 chr1 58935668 58935733 -138259699 + MIR SINE MIR 78 145 -117 8 1034 2349 109 70 0 chr1 58935733 58936090 -138259342 + L1VL2 LINE L1 332 713 -5622 8 1034 2358 85 19 35 chr1 58936090 58936466 -138258966 - RLTR9D LTR ERVK 0 403 34 8 1034 203 79 26 0 chr1 58936471 58936509 -138258923 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1034 1176 68 7 0 chr1 58936511 58936657 -138258775 - B1_Mus1 SINE Alu 0 148 2 8 1034 370 21 0 0 chr1 58936657 58936704 -138258728 - RLTR9D LTR ERVK -356 47 1 8 1034 386 164 27 14 chr1 58936705 58936779 -138258653 - ETnERV2-int LTR ERVK -2 7404 7330 8 1034 1003 102 22 0 chr1 58936992 58937129 -138258303 - ETnERV2-int LTR ERVK -981 6425 6286 8 1034 9538 170 82 45 chr1 58937140 58940273 -138255159 - ETnERV2-int LTR ERVK -1854 5390 790 8 1034 1239 118 0 0 chr1 58940269 58940438 -138254994 + IAPEY3-int LTR ERVK 1043 1211 -6469 8 1034 9290 109 4 21 chr1 58940419 58941785 -138253647 + IAPEy-int LTR ERVK 6171 7513 0 8 1034 2232 94 82 0 chr1 58941785 58942115 -138253317 + IAPEY2_LTR LTR ERVK 1 357 0 8 1034 657 286 16 81 chr1 58942118 58942365 -138253067 - ETnERV2-int LTR ERVK -3081 233 3 8 1034 2624 85 34 56 chr1 58942367 58942779 -138252653 - RLTR9D LTR ERVK 0 403 1 8 1034 2061 72 59 15 chr1 58942779 58943012 -138252420 + L1VL2 LINE L1 708 957 -5378 8 1034 1171 68 0 0 chr1 58943012 58943159 -138252273 + B1_Mus2 SINE Alu 1 147 0 8 1034 4214 64 7 118 chr1 58943159 58943906 -138251526 + MusHAL1 LINE L1 55 718 -1994 8 1034 7216 98 37 9 chr1 58943909 58945199 -138250233 + Lx LINE L1 5325 6654 0 8 1034 484 290 76 48 chr1 58945536 58945871 -138249561 + RMER17C LTR ERVK 2 376 -34 8 1034 2760 36 9 9 chr1 58946037 58946377 -138249055 + L1Md_F3 LINE L1 6245 6584 0 8 1034 203 271 0 0 chr1 58946446 58946505 -138248927 + A-rich Low_complexity Low_complexity 1 59 0 8 1034 1095 68 7 7 chr1 58946566 58946713 -138248719 - B1_Mus1 SINE Alu 0 148 2 8 1034 2105 180 21 46 chr1 58946749 58947180 -138248252 + RLTR9B2 LTR ERVK 1 420 0 8 1034 369 0 0 0 chr1 58948140 58948181 -138247251 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1034 441 0 0 0 chr1 58948650 58948699 -138246733 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1034 4921 44 2 14 chr1 58948901 58949495 -138245937 + LTRIS_Mus LTR ERV1 1 587 0 8 1034 219 300 37 12 chr1 58949708 58949789 -138245643 + (CAGAGA)n Simple_repeat Simple_repeat 1 83 0 8 1034 411 21 0 0 chr1 58950304 58950352 -138245080 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1034 28 29 0 0 chr1 58950541 58950576 -138244856 + AT_rich Low_complexity Low_complexity 1 35 0 8 1034 1124 95 0 0 chr1 58951280 58951427 -138244005 - B1_Mus1 SINE Alu 0 148 2 8 1034 24 0 0 0 chr1 58951435 58951459 -138243973 + AT_rich Low_complexity Low_complexity 1 24 0 8 1034 378 287 14 76 chr1 58951461 58951672 -138243760 - B3A SINE B2 0 198 1 8 1034 207 220 0 0 chr1 58952004 58952054 -138243378 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1034 702 149 0 0 chr1 58952103 58952237 -138243195 + (TG)n Simple_repeat Simple_repeat 2 135 0 8 1034 278 345 69 29 chr1 58953200 58953373 -138242059 - Charlie9 DNA MER1_type -2572 185 6 8 1034 302 262 35 78 chr1 58953464 58953580 -138241852 + MT2B LTR ERVL 154 264 -337 8 1034 670 56 0 0 chr1 58953520 58953609 -138241823 + B1_Mus2 SINE Alu 53 141 -6 8 1034 567 0 0 0 chr1 58953611 58953674 -138241758 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1034 695 213 52 0 chr1 58955700 58955836 -138239596 + B1_Mur3 SINE Alu 1 143 -6 8 1034 360 0 0 0 chr1 58955875 58955915 -138239517 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1034 2753 127 6 50 chr1 58955967 58956447 -138238985 - RMER6B LTR ERVK -2 459 1 8 1034 385 197 66 0 chr1 58956571 58956637 -138238795 - B1_Mus2 SINE Alu -39 108 38 8 1034 317 244 36 27 chr1 58956637 58956745 -138238687 + ID4 SINE ID 2 110 -42 8 1034 435 258 16 8 chr1 58956982 58957107 -138238325 + RSINE1 SINE B4 3 128 -37 8 1034 26 0 0 0 chr1 58959438 58959464 -138235968 + AT_rich Low_complexity Low_complexity 1 26 0 8 1034 1047 147 0 0 chr1 58961244 58961421 -138234011 + (TA)n Simple_repeat Simple_repeat 1 177 0 8 1034 1195 68 0 0 chr1 58961461 58961609 -138233823 - B1_Mus1 SINE Alu 0 148 1 8 1034 1310 80 25 46 chr1 58962799 58962996 -138232436 - B2_Mm2 SINE B2 -2 193 1 8 1034 1177 58 0 0 chr1 58963110 58963249 -138232183 + B1_Mus2 SINE Alu 1 139 -8 8 1034 180 0 0 0 chr1 58963261 58963281 -138232151 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1034 342 0 0 0 chr1 58964020 58964058 -138231374 + (TTA)n Simple_repeat Simple_repeat 2 39 0 8 1034 1167 290 244 18 chr1 58964062 58965148 -138230284 + Charlie1 DNA MER1_type 1448 2779 -2 8 1034 414 0 0 0 chr1 58966650 58966696 -138228736 + (CACAG)n Simple_repeat Simple_repeat 1 46 0 8 1034 2813 70 56 15 chr1 58967284 58967675 -138227757 + MTB_Mm LTR MaLR 1 407 0 9 1034 420 252 8 51 chr1 58967915 58968032 -138227400 + PB1D10 SINE Alu 5 116 -1 9 1034 285 151 0 0 chr1 58968049 58968102 -138227330 + GA-rich Low_complexity Low_complexity 2 54 0 9 1034 588 247 100 26 chr1 58969350 58969749 -138225683 + L1MC3 LINE L1 6616 7180 -862 9 1034 991 244 55 73 chr1 58969769 58970139 -138225293 + MTE2a LTR MaLR 35 404 -15 9 1034 610 182 7 70 chr1 58970456 58970518 -138224914 - RSINE1 SINE B4 -31 134 79 9 1034 2274 96 6 61 chr1 58970518 58970863 -138224569 + ORR1A3 LTR MaLR 1 326 0 9 1034 610 182 7 70 chr1 58970863 58970942 -138224490 - RSINE1 SINE B4 -87 78 2 9 1034 468 81 0 0 chr1 58971165 58971239 -138224193 + (CA)n Simple_repeat Simple_repeat 2 75 0 9 1034 570 224 75 3 chr1 58971617 58971911 -138223521 - MTD LTR MaLR -6 413 3 9 1034 623 250 0 59 chr1 58972014 58972184 -138223248 + RSINE1 SINE B4 2 161 -4 9 1034 225 0 0 0 chr1 58973405 58973430 -138222002 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1034 307 231 60 73 chr1 58973822 58973948 -138221484 + B1F SINE Alu 9 148 -1 9 1034 843 304 122 47 chr1 58974180 58975247 -138220185 + Lx7 LINE L1 4754 5908 -1788 9 1034 189 0 0 0 chr1 58976267 58976288 -138219144 + (G)n Simple_repeat Simple_repeat 1 21 0 9 1034 197 238 0 0 chr1 58977178 58977220 -138218212 + MIRc SINE MIR 57 98 -170 9 1034 238 280 10 29 chr1 58977722 58977825 -138217607 + MLT1A0 LTR MaLR 265 365 0 9 1034 25 0 0 0 chr1 58979124 58979149 -138216283 + AT_rich Low_complexity Low_complexity 1 25 0 9 1034 363 265 11 29 chr1 58979149 58979267 -138216165 - PB1D10 SINE Alu 0 127 3 9 1034 24 0 0 0 chr1 58979373 58979397 -138216035 + AT_rich Low_complexity Low_complexity 1 24 0 9 1034 585 205 43 0 chr1 58979417 58979534 -138215898 + B1_Mur1 SINE Alu 2 123 -26 9 1034 459 0 0 0 chr1 58979611 58979662 -138215770 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1034 1333 272 160 15 chr1 58979706 58980247 -138215185 + Lx8 LINE L1 6246 6869 -827 9 1034 735 234 13 6 chr1 58981531 58981690 -138213742 + B3 SINE B2 1 160 -56 9 1034 495 261 9 9 chr1 58981910 58982022 -138213410 + B3A SINE B2 1 112 -86 9 129 7952 52 19 1 chr1 58982024 58983155 -138212277 + L1_Mus1 LINE L1 5417 6567 0 9 1035 8144 99 122 11 chr1 58983599 58985811 -138209621 + L1VL2 LINE L1 519 3293 -2593 9 1035 23 0 0 0 chr1 58985964 58985987 -138209445 + AT_rich Low_complexity Low_complexity 1 23 0 9 1035 3261 43 8 2 chr1 58986139 58986533 -138208899 + MTA_Mm LTR MaLR 1 396 0 9 1035 25 51 0 0 chr1 58986786 58986825 -138208607 + AT_rich Low_complexity Low_complexity 1 39 0 9 1035 307 281 71 30 chr1 58987085 58987184 -138208248 + RSINE1 SINE B4 42 144 -21 9 1035 2830 39 0 6 chr1 58987594 58987933 -138207499 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 1035 16169 43 46 20 chr1 58987933 58989971 -138205461 + IAPEz-int LTR ERVK 8 2099 -4382 9 1035 15530 25 1 3 chr1 58989964 58991713 -138203719 + IAPEz-int LTR ERVK 4737 6481 0 9 1035 2854 30 0 9 chr1 58991713 58992053 -138203379 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 1035 245 261 91 0 chr1 58992053 58992141 -138203291 + ID_B1 SINE B4 129 224 0 9 1035 314 279 96 58 chr1 58993398 58993626 -138201806 + MIRc SINE MIR 8 231 -37 9 1035 386 201 13 0 chr1 58993787 58993873 -138201559 + MTE2b LTR MaLR 1 87 -292 9 1035 193 358 54 47 chr1 58993977 58994106 -138201326 + MIRb SINE MIR 24 153 -115 9 1035 315 0 0 0 chr1 58994953 58994988 -138200444 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1035 4398 24 0 2 chr1 58995060 58995554 -138199878 - MT2_Mm LTR ERVL 0 493 1 9 1035 321 0 0 0 chr1 58995554 58995592 -138199840 - MERVL-int LTR ERVL 0 5485 5448 9 1035 339 111 26 53 chr1 58995592 58995668 -138199764 - ORR1A3-int LTR MaLR -1323 640 567 9 1035 39012 16 10 1 chr1 58995668 59000000 -138195432 - MERVL-int LTR ERVL -114 5371 1000 9 1035 9045 14 1 1 chr1 59000000 59000999 -138194433 - MERVL-int LTR ERVL -4486 999 1 1 1035 4649 18 0 2 chr1 59001000 59001493 -138193939 - MT2_Mm LTR ERVL -1 492 1 1 1035 288 274 104 52 chr1 59001656 59001810 -138193622 + L1M5 LINE L1 5358 5519 -654 2 1035 301 320 0 0 chr1 59001853 59001928 -138193504 + MER58B DNA MER1_type 179 253 -88 3 1035 22 0 0 0 chr1 59001932 59001954 -138193478 + AT_rich Low_complexity Low_complexity 1 22 0 4 1035 1180 82 0 7 chr1 59002004 59002151 -138193281 - B1_Mus1 SINE Alu -1 147 2 5 1035 397 219 104 0 chr1 59002152 59002248 -138193184 + PB1D9 SINE Alu 14 119 -1 6 1035 582 15 0 0 chr1 59002253 59002320 -138193112 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1035 31 0 0 0 chr1 59002749 59002780 -138192652 + AT_rich Low_complexity Low_complexity 1 31 0 8 1035 271 350 54 5 chr1 59003815 59003999 -138191433 + L1MEc LINE L1 2003 2195 -4205 9 1035 485 240 36 72 chr1 59004063 59004202 -138191230 - MER20 DNA MER1_type -85 134 1 1 1035 233 319 25 42 chr1 59004589 59004707 -138190725 + MT2B LTR ERVL 144 259 -342 1 1035 522 237 35 0 chr1 59004628 59004742 -138190690 + B1F SINE Alu 24 141 -8 1 1035 707 167 26 9 chr1 59004751 59004866 -138190566 + PB1D9 SINE Alu 1 117 -3 1 1035 360 64 0 0 chr1 59004907 59004954 -138190478 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1035 380 253 25 0 chr1 59005018 59005097 -138190335 + PB1D10 SINE Alu 1 81 -36 1 1035 838 171 32 24 chr1 59005575 59005759 -138189673 - B3 SINE B2 -5 190 1 1 1035 325 320 100 79 chr1 59006074 59006264 -138189168 - MLT1L LTR MaLR -364 246 53 1 1035 773 265 119 4 chr1 59006356 59006617 -138188815 + B4 SINE B4 1 291 -1 1 1035 476 265 29 0 chr1 59006724 59006826 -138188606 + MER58B DNA MER1_type 5 109 -232 1 1035 336 111 0 0 chr1 59007127 59007181 -138188251 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2 1035 852 87 142 52 chr1 59007185 59007319 -138188113 - B1_Mus1 SINE Alu -1 147 2 2 1035 391 265 69 30 chr1 59007717 59007818 -138187614 - ID_B1 SINE B4 -32 192 88 2 1035 952 210 44 0 chr1 59007876 59008057 -138187375 - B3 SINE B2 -17 199 11 2 1035 727 276 171 40 chr1 59008895 59009292 -138186140 - MLT1D LTR MaLR -39 466 18 2 1035 244 286 31 62 chr1 59009347 59009444 -138185988 - RSINE1 SINE B4 -71 94 1 2 1035 280 246 0 14 chr1 59009470 59009544 -138185888 + MIR SINE MIR 123 195 -67 2 1035 690 302 20 20 chr1 59011445 59011641 -138183791 - ID_B1 SINE B4 -7 217 22 2 1035 199 0 0 61 chr1 59013951 59013984 -138181448 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1035 355 155 0 49 chr1 59014236 59014297 -138181135 + B1F2 SINE Alu 1 58 -91 2 1035 299 246 0 40 chr1 59014297 59014312 -138181120 + ID_B1 SINE B4 82 154 -70 3 1035 1340 161 13 39 chr1 59015117 59015349 -138180083 + URR1A DNA MER1_type 1 226 0 3 1035 831 170 238 6 chr1 59016573 59016745 -138178687 - B3 SINE B2 -4 212 1 3 1035 1739 79 33 12 chr1 59017102 59017345 -138178087 + L1_Mus2 LINE L1 6319 6566 0 3 1035 577 227 9 0 chr1 59017508 59017618 -138177814 - B3 SINE B2 -86 130 20 3 1035 972 116 7 0 chr1 59017633 59017771 -138177661 - B1_Mur4 SINE Alu 0 150 12 3 1035 607 221 7 65 chr1 59017771 59017788 -138177644 - ID_B1 SINE B4 0 224 79 3 1035 428 267 157 27 chr1 59018497 59018682 -138176750 - MIRb SINE MIR -41 227 15 3 1035 216 0 0 0 chr1 59018833 59018857 -138176575 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1035 754 189 8 8 chr1 59018868 59019001 -138176431 + RSINE1 SINE B4 2 134 -31 3 1035 228 67 0 0 chr1 59019022 59019052 -138176380 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1035 822 133 44 0 chr1 59019947 59020082 -138175350 + B1_Mur4 SINE Alu 10 150 0 4 1035 294 287 63 11 chr1 59020193 59020288 -138175144 + PB1D9 SINE Alu 1 100 -20 4 1035 249 343 57 0 chr1 59021203 59021308 -138174124 + PB1D10 SINE Alu 1 111 -6 4 1035 546 43 0 0 chr1 59021315 59021384 -138174048 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1035 241 245 67 0 chr1 59021562 59021630 -138173802 - B1F1 SINE Alu -34 115 44 4 1035 836 225 110 91 chr1 59021958 59022266 -138173166 + ORR1E LTR MaLR 9 322 -37 4 1035 291 54 0 0 chr1 59022266 59022303 -138173129 + (CAA)n Simple_repeat Simple_repeat 3 39 0 4 1035 751 266 85 30 chr1 59022772 59023098 -138172334 - L1_Rod LINE L1 -819 5493 5091 4 1035 622 276 17 6 chr1 59023145 59023355 -138172077 + Lx7 LINE L1 5594 5807 -73 4 1035 31 76 0 0 chr1 59023362 59023428 -138172004 + AT_rich Low_complexity Low_complexity 1 66 0 5 1035 261 310 0 0 chr1 59023437 59023508 -138171924 + L1MA5 LINE L1 5868 5938 -362 5 1035 748 158 0 32 chr1 59024317 59024441 -138170991 - PB1D9 SINE Alu 0 120 1 5 1035 21 36 0 0 chr1 59024498 59024526 -138170906 + AT_rich Low_complexity Low_complexity 1 28 0 5 1035 833 269 38 9 chr1 59025662 59025872 -138169560 + B3 SINE B2 1 216 0 5 1035 410 329 37 37 chr1 59026295 59026459 -138168973 + MIR SINE MIR 7 170 -92 5 1035 228 269 19 0 chr1 59026728 59026780 -138168652 - RSINE1 SINE B4 -2 163 111 5 1035 598 250 53 41 chr1 59027127 59027298 -138168134 - MLT1B LTR MaLR -2 388 216 5 1035 253 279 24 48 chr1 59027328 59027411 -138168021 - MLT1B LTR MaLR -309 81 1 5 1035 197 333 194 0 chr1 59027612 59027705 -138167727 + MIRb SINE MIR 18 128 -140 5 1035 571 261 50 13 chr1 59028130 59028289 -138167143 + RSINE1 SINE B4 1 165 0 5 1035 233 137 12 88 chr1 59028293 59028330 -138167102 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1035 623 226 17 0 chr1 59028330 59028445 -138166987 + PB1D9 SINE Alu 4 120 0 6 1035 233 137 12 88 chr1 59028445 59028487 -138166945 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1035 252 235 29 0 chr1 59028718 59028786 -138166646 - MIR3 SINE MIR -1 207 138 6 1035 188 163 0 104 chr1 59031186 59031234 -138164198 + L2c LINE L2 3336 3378 -9 6 1035 594 128 0 0 chr1 59031636 59031730 -138163702 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 1035 616 161 0 89 chr1 59031763 59031886 -138163546 - PB1D9 SINE Alu -7 113 2 6 1035 280 209 19 149 chr1 59031791 59031898 -138163534 - MT2B LTR ERVL -357 244 152 6 1035 387 0 0 0 chr1 59032264 59032307 -138163125 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1035 420 188 304 0 chr1 59032563 59032675 -138162757 - B1_Mus1 SINE Alu -1 147 2 6 1035 8455 35 2 8 chr1 59035337 59036302 -138159130 + L1Md_F2 LINE L1 5624 6582 0 7 1035 198 0 0 0 chr1 59038303 59038325 -138157107 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1035 305 367 28 41 chr1 59038712 59038857 -138156575 + MamRep605 Unknown Unknown 678 820 -56 7 1035 1353 251 31 33 chr1 59038915 59039073 -138156359 + ORR1E LTR MaLR 2 162 -197 7 1035 4027 161 140 34 chr1 59039073 59039889 -138155543 - RMER19B LTR ERVK 0 902 1 7 1035 1353 251 31 33 chr1 59039889 59040089 -138155343 + ORR1E LTR MaLR 163 359 0 7 1035 408 284 19 22 chr1 59040318 59040427 -138155005 + B1F SINE Alu 2 114 -6 7 1035 594 0 0 0 chr1 59040427 59040493 -138154939 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 7 1035 1170 147 53 53 chr1 59040795 59041003 -138154429 - B3 SINE B2 -8 208 1 7 1035 722 295 127 12 chr1 59043441 59043781 -138151651 + L1ME1 LINE L1 5523 5901 -278 7 1035 270 167 0 0 chr1 59043862 59043910 -138151522 - L1M5 LINE L1 -366 5813 5766 7 1035 237 247 157 0 chr1 59043916 59044005 -138151427 - L1MD LINE L1 -2519 5476 5374 8 1035 325 266 114 23 chr1 59044005 59044136 -138151296 - L1MC LINE L1 -823 5323 5181 8 1035 829 174 164 27 chr1 59044727 59044910 -138150522 + B3 SINE B2 2 209 -7 8 1035 482 322 35 7 chr1 59045910 59046054 -138149378 + RSINE1 SINE B4 1 148 -17 8 1035 363 60 0 0 chr1 59046104 59046154 -138149278 + (TAGG)n Simple_repeat Simple_repeat 2 51 0 8 1035 240 217 0 0 chr1 59046164 59046210 -138149222 + L1ME1 LINE L1 5970 6015 -109 7 1035 312 27 0 0 chr1 59047232 59047269 -138148163 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1035 230 254 27 40 chr1 59047269 59047343 -138148089 - ID4 SINE ID -10 73 1 8 1035 445 276 65 8 chr1 59047432 59047556 -138147876 + B1F1 SINE Alu 11 141 -8 8 1035 216 135 0 0 chr1 59047640 59047677 -138147755 + (ATG)n Simple_repeat Simple_repeat 2 38 0 8 1035 215 209 0 0 chr1 59050317 59050360 -138145072 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1035 30 0 0 0 chr1 59050470 59050500 -138144932 + AT_rich Low_complexity Low_complexity 1 30 0 9 1035 387 0 0 0 chr1 59050614 59050657 -138144775 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1035 324 301 27 101 chr1 59050658 59050806 -138144626 - RSINE1 SINE B4 -25 140 4 9 1035 21 57 0 0 chr1 59050806 59050841 -138144591 + AT_rich Low_complexity Low_complexity 1 35 0 9 1035 25 65 0 0 chr1 59051030 59051076 -138144356 + AT_rich Low_complexity Low_complexity 1 46 0 9 1035 749 271 216 23 chr1 59052197 59052507 -138142925 - ORR1D2 LTR MaLR 0 370 1 9 1035 337 270 104 47 chr1 59052953 59053133 -138142299 - MLT2B4 LTR ERVL -77 479 231 9 1035 394 306 46 0 chr1 59054965 59055073 -138140359 - PB1D7 SINE Alu -1 119 7 9 1035 808 89 208 8 chr1 59055111 59055236 -138140196 + B1_Mur4 SINE Alu 1 150 0 9 1035 27 103 0 0 chr1 59055243 59055340 -138140092 + AT_rich Low_complexity Low_complexity 1 97 0 9 1035 269 268 0 0 chr1 59055376 59055432 -138140000 + B1F2 SINE Alu 24 79 -70 1 1035 211 264 0 54 chr1 59055769 59055825 -138139607 - B1F SINE Alu -14 135 83 1 1035 510 227 57 231 chr1 59056371 59056721 -138138711 + B4 SINE B4 4 292 0 1 1035 7157 68 3 4 chr1 59057100 59058414 -138137018 + L1_Mus2 LINE L1 5253 6565 -1 1 1035 25 83 0 0 chr1 59058418 59058478 -138136954 + AT_rich Low_complexity Low_complexity 1 60 0 1 1035 461 72 0 46 chr1 59058486 59058573 -138136859 + (GGA)n Simple_repeat Simple_repeat 3 85 0 1 1035 378 0 0 0 chr1 59058724 59058766 -138136666 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1035 528 292 213 28 chr1 59058768 59059229 -138136203 + Lx8 LINE L1 6892 7437 -36 1 1035 480 0 0 0 chr1 59059294 59059350 -138136082 - Lx LINE L1 -873 5781 5726 1 1035 29 0 0 0 chr1 59059469 59059498 -138135934 + AT_rich Low_complexity Low_complexity 1 29 0 1 1035 216 0 0 0 chr1 59059868 59059892 -138135540 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1035 379 48 16 0 chr1 59065505 59065568 -138129864 - L1Md_F3 LINE L1 -2 6582 6519 1 1035 1323 52 0 0 chr1 59065564 59065736 -138129696 + L1Md_A LINE L1 6409 6580 -2 1 1035 3927 40 0 6 chr1 59065738 59066212 -138129220 - L1Md_F2 LINE L1 -14 6568 6098 1 1035 368 260 224 7 chr1 59066217 59066366 -138129066 - B3A SINE B2 -9 184 16 1 1035 684 67 0 0 chr1 59066765 59066855 -138128577 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 1 1035 563 259 14 47 chr1 59067176 59067387 -138128045 - L1M2 LINE L1 -3806 2337 2134 1 1035 394 232 0 12 chr1 59068155 59068228 -138127204 + ID4 SINE ID 2 73 -10 1 1035 330 26 0 0 chr1 59068228 59068267 -138127165 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1035 394 284 0 741 chr1 59068267 59068306 -138127126 + ID4 SINE ID 74 110 -42 1 1035 234 263 131 0 chr1 59070195 59070294 -138125138 + Lx8 LINE L1 7155 7266 -207 1 1035 261 188 62 0 chr1 59070294 59070358 -138125074 + RMER15 LTR ERVL 403 470 -105 1 1035 302 268 161 35 chr1 59071187 59071533 -138123899 - L1MD2 LINE L1 -307 5935 5550 1 1035 330 262 71 114 chr1 59071542 59071693 -138123739 - L1MD2 LINE L1 -1177 4969 4826 1 1035 601 256 73 34 chr1 59071693 59071899 -138123533 - B3 SINE B2 -2 214 1 1 1035 330 262 71 114 chr1 59071899 59071958 -138123474 - L1MD2 LINE L1 -1321 4825 4768 1 1035 238 264 104 30 chr1 59072088 59072252 -138123180 - L1MC LINE L1 -1556 4590 4415 1 1035 363 238 215 16 chr1 59072394 59072596 -138122836 - L1MD2 LINE L1 -2048 4098 3864 1 1035 3803 72 0 16 chr1 59073050 59073561 -138121871 + L1Md_F2 LINE L1 6078 6580 -2 1 1035 3819 131 103 9 chr1 59074386 59075077 -138120355 + RMER6A LTR ERVK 1 756 0 1 1035 762 252 58 24 chr1 59075095 59075302 -138120130 - B3 SINE B2 -1 215 2 1 1035 277 288 150 11 chr1 59075743 59075968 -138119464 + MIRb SINE MIR 8 262 0 1 1035 877 158 20 0 chr1 59076615 59076761 -138118671 + B1_Mur2 SINE Alu 1 149 0 1 1035 668 191 0 114 chr1 59076983 59077149 -138118283 - B1_Mur3 SINE Alu 0 149 3 1 1035 373 258 43 11 chr1 59077175 59077269 -138118163 - ID_B1 SINE B4 -3 221 125 1 1035 706 255 80 5 chr1 59077343 59077544 -138117888 - ID_B1 SINE B4 -8 216 1 1 1035 397 234 216 0 chr1 59077691 59077802 -138117630 - B1F1 SINE Alu -1 148 14 1 1035 244 229 157 0 chr1 59077846 59077916 -138117516 + BC1_Mm scRNA scRNA 1 81 -71 1 1035 858 213 111 5 chr1 59078504 59078721 -138116711 - MLT-int LTR MaLR -2 1733 1494 1 1035 948 188 155 5 chr1 59078754 59078973 -138116459 + MTD LTR MaLR 162 413 -6 1 1035 27 29 0 0 chr1 59079682 59079716 -138115716 + AT_rich Low_complexity Low_complexity 1 34 0 1 1035 292 178 198 24 chr1 59080344 59080476 -138114956 + L1M2 LINE L1 1182 1339 -5511 1 1035 237 340 0 0 chr1 59080523 59080620 -138114812 + L1M2 LINE L1 1327 1423 -5323 1 1035 21 0 0 0 chr1 59080880 59080901 -138114531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 858 229 40 5 chr1 59080904 59081102 -138114330 - B3 SINE B2 -10 206 2 1 1035 555 225 35 7 chr1 59082188 59082331 -138113101 - B1_Mur1 SINE Alu -1 148 2 1 1035 323 322 42 38 chr1 59083789 59084025 -138111407 + L1M2 LINE L1 2471 2632 -4217 1 1035 325 318 25 7 chr1 59084142 59084316 -138111116 + L1M2 LINE L1 2794 2977 -3868 1 1035 29953 28 0 4 chr1 59084302 59088088 -138107344 + L1Md_T LINE L1 1815 5586 -297 1 1035 8318 39 1 0 chr1 59088088 59089083 -138106349 + L1Md_T LINE L1 5587 6582 0 1 1035 6395 48 1 11 chr1 59089078 59089884 -138105548 + L1Md_F2 LINE L1 5783 6580 -2 1 1035 1084 86 14 0 chr1 59089927 59090067 -138105365 + B1_Mus2 SINE Alu 1 142 -5 1 1035 215 31 31 0 chr1 59090095 59090127 -138105305 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1035 5987 173 93 25 chr1 59090127 59091607 -138103825 + L1_Mur3 LINE L1 1318 2897 -2983 1 1035 2004 204 43 12 chr1 59091611 59092097 -138103335 + L1_Mur3 LINE L1 4973 5473 -407 1 1035 642 282 26 31 chr1 59092102 59092443 -138102989 + L1MA4 LINE L1 5592 5966 -331 1 1035 288 279 48 9 chr1 59092441 59092546 -138102886 + L1MB5 LINE L1 5869 5977 -197 1 1035 421 295 50 7 chr1 59092550 59092690 -138102742 - LTR16A LTR ERVL -275 176 31 1 1035 313 297 76 13 chr1 59093091 59093248 -138102184 - ERVL-E-int LTR ERVL -757 4910 4744 1 1035 374 156 233 0 chr1 59093259 59093349 -138102083 + MER53 DNA hAT 3 113 -80 1 1035 480 286 22 22 chr1 59093591 59093727 -138101705 - ID_B1 SINE B4 -6 218 83 1 1035 278 299 28 18 chr1 59093967 59094076 -138101356 - ERVL-E-int LTR ERVL -1409 4352 4243 1 1035 27 0 0 0 chr1 59094470 59094497 -138100935 + AT_rich Low_complexity Low_complexity 1 27 0 1 1035 1055 291 36 0 chr1 59094656 59094934 -138100498 + B4 SINE B4 1 288 -4 1 1035 333 284 28 56 chr1 59095145 59095324 -138100108 + L1MA6 LINE L1 5816 5989 -311 1 1035 579 207 27 33 chr1 59095428 59095619 -138099813 - ORR1A4 LTR MaLR -129 197 1 1 1035 9611 136 42 117 chr1 59095620 59097743 -138097689 - ORR1A4-int LTR MaLR -1 1962 1 1 1035 1700 162 5 111 chr1 59097743 59098111 -138097321 - ORR1A4 LTR MaLR 0 329 1 1 1035 416 256 11 0 chr1 59098111 59098201 -138097231 + B3 SINE B2 67 157 -59 1 1035 396 0 0 0 chr1 59098203 59098247 -138097185 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1035 234 289 77 15 chr1 59098326 59098456 -138096976 + L1MA6 LINE L1 6129 6266 -25 1 1035 1309 70 6 0 chr1 59098745 59098916 -138096516 + B2_Mm2 SINE B2 5 176 -19 1 1035 748 182 231 0 chr1 59099669 59099896 -138095536 + Lx9 LINE L1 7320 7586 -58 1 1035 402 21 0 0 chr1 59099896 59099943 -138095489 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1035 748 182 231 0 chr1 59099943 59099979 -138095453 + Lx9 LINE L1 7587 7643 -1 1 1035 297 309 158 51 chr1 59100690 59100963 -138094469 + ORR1E LTR MaLR 58 359 0 1 1035 1161 229 169 55 chr1 59100983 59101422 -138094010 - MLT1D LTR MaLR -16 489 1 1 1035 612 303 0 0 chr1 59101439 59101571 -138093861 - MER2B DNA MER2_type 0 336 205 1 1035 269 290 120 9 chr1 59101819 59101927 -138093505 + MLT1H2 LTR MaLR 239 358 -197 1 1035 255 275 0 0 chr1 59102060 59102129 -138093303 + MLT-int LTR MaLR 1 69 -1666 1 1035 1068 60 0 0 chr1 59102696 59102829 -138092603 + B1_Mm SINE Alu 1 133 -14 1 1035 24 0 0 0 chr1 59102985 59103009 -138092423 + AT_rich Low_complexity Low_complexity 1 24 0 1 1035 228 313 73 113 chr1 59103153 59103241 -138092191 + MLT1H2-int LTR MaLR 1237 1318 -91 1 1035 1856 34 4 4 chr1 59103241 59103474 -138091958 + L1Md_F3 LINE L1 6351 6583 -1 1 1035 228 313 73 113 chr1 59103474 59103536 -138091896 + MLT1H2-int LTR MaLR 1319 1381 -28 1 1035 253 333 53 32 chr1 59103602 59103746 -138091686 + MLT1H2 LTR MaLR 148 300 -249 1 1035 409 252 113 16 chr1 59103909 59104106 -138091326 + MLT1H2 LTR MaLR 330 563 -6 1 1035 669 165 10 0 chr1 59104207 59104310 -138091122 - B1_Mur3 SINE Alu -7 142 39 1 1035 251 204 0 100 chr1 59104257 59104317 -138091115 - 4.5SRNA scRNA scRNA -8 86 33 1 1035 333 162 0 0 chr1 59104317 59104385 -138091047 + CT-rich Low_complexity Low_complexity 2 69 0 1 1035 249 193 16 95 chr1 59104394 59104457 -138090975 - B1_Mus1 SINE Alu -88 60 2 1 1035 393 176 0 0 chr1 59104733 59104807 -138090625 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1035 339 345 37 42 chr1 59104809 59105024 -138090408 + Lx8 LINE L1 6479 6692 -781 1 1035 910 292 27 7 chr1 59105065 59105361 -138090071 + Lx8 LINE L1 6763 7064 -409 1 1035 528 324 83 15 chr1 59105826 59106164 -138089268 + Lx8 LINE L1 7073 7433 -40 1 1035 790 207 0 39 chr1 59106351 59106507 -138088925 - B1_Mur4 SINE Alu 0 150 1 1 1035 1451 48 16 16 chr1 59106634 59106823 -138088609 + B2_Mm2 SINE B2 2 190 -5 1 1035 946 213 26 18 chr1 59107022 59107251 -138088181 - Lx5 LINE L1 -3 7047 6817 1 1035 23 33 0 0 chr1 59108136 59108166 -138087266 + AT_rich Low_complexity Low_complexity 1 30 0 1 1035 829 237 33 24 chr1 59109118 59109330 -138086102 + B3 SINE B2 3 216 0 1 1035 773 208 41 6 chr1 59109620 59109860 -138085572 - L1M3de LINE L1 -604 6160 5873 1 1035 234 0 0 0 chr1 59109860 59109886 -138085546 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1035 462 303 118 6 chr1 59109886 59110166 -138085266 - L1M3de LINE L1 -854 5872 5570 1 1035 335 223 0 21 chr1 59110219 59110315 -138085117 - L1M3de LINE L1 -1837 4889 4796 1 1035 1325 242 203 26 chr1 59110319 59110905 -138084527 + Lx8 LINE L1 6774 7463 -10 1 1035 473 255 55 24 chr1 59110990 59111155 -138084277 - L1M3de LINE L1 -1921 4808 4639 1 1035 270 153 0 92 chr1 59111192 59111257 -138084175 + B1_Mus1 SINE Alu 35 93 -55 1 1035 1090 207 5 5 chr1 59111279 59111493 -138083939 - B3 SINE B2 0 216 3 1 1035 309 206 181 21 chr1 59111503 59111691 -138083741 - L1M3de LINE L1 -2885 3841 3624 1 1035 495 0 0 0 chr1 59111724 59111779 -138083653 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1035 309 320 68 38 chr1 59111789 59111922 -138083510 - B3A SINE B2 -46 152 16 1 1035 968 262 112 59 chr1 59112042 59112638 -138082794 - L1M3de LINE L1 -3216 3510 2883 1 1035 377 305 87 33 chr1 59112702 59112885 -138082547 - L1M3de LINE L1 -5056 1597 1405 1 1035 3635 25 5 0 chr1 59113015 59113409 -138082023 + MTA_Mm LTR MaLR 1 396 0 1 1036 344 271 30 72 chr1 59113576 59113743 -138081689 - L1M3de LINE L1 -5701 952 793 1 1036 26 0 0 0 chr1 59113792 59113818 -138081614 + AT_rich Low_complexity Low_complexity 1 26 0 1 1036 550 110 12 0 chr1 59113862 59113944 -138081488 + BC1_Mm scRNA scRNA 6 88 -64 1 1036 193 397 21 44 chr1 59113956 59114105 -138081327 + MIRb SINE MIR 22 161 -101 1 1036 432 117 0 0 chr1 59114267 59114344 -138081088 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 1036 323 186 68 0 chr1 59114416 59114475 -138080957 + ID4 SINE ID 17 79 -4 1 1036 324 70 0 0 chr1 59114917 59114960 -138080472 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1036 708 267 65 30 chr1 59115087 59115288 -138080144 + B3 SINE B2 1 208 -8 1 1036 210 37 0 0 chr1 59115573 59115600 -138079832 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1036 1307 273 78 43 chr1 59116232 59116647 -138078785 + L1MB5 LINE L1 5254 5677 -497 1 1036 457 230 41 81 chr1 59116647 59116770 -138078662 + PB1D7 SINE Alu 1 118 -2 1 1036 1307 313 66 52 chr1 59116770 59117217 -138078215 + L1MB5 LINE L1 5678 6134 -40 1 1036 359 247 0 0 chr1 59117880 59117957 -138077475 - MLT1A LTR MaLR 0 374 298 1 1036 416 281 122 37 chr1 59118024 59118290 -138077142 + MLT1H2 LTR MaLR 93 427 -122 1 1036 432 309 156 40 chr1 59120247 59120667 -138074765 - MLT2B4 LTR ERVL 0 464 14 2 1036 925 298 219 2 chr1 59120675 59121160 -138074272 - ERVL-B4-int LTR ERVL 0 5714 5125 2 1036 395 303 91 0 chr1 59121171 59121303 -138074129 + RSINE1 SINE B4 3 146 -19 2 1036 1043 233 9 23 chr1 59121332 59121547 -138073885 - B3 SINE B2 -4 212 1 2 1036 1110 301 134 23 chr1 59121571 59122092 -138073340 - ERVL-B4-int LTR ERVL -589 5125 4547 2 1036 768 318 45 5 chr1 59122204 59122425 -138073007 - B4A SINE B4 -8 284 55 2 1036 268 264 0 0 chr1 59122776 59122829 -138072603 - ID_B1 SINE B4 -73 151 99 2 1036 272 200 0 0 chr1 59122786 59122831 -138072601 - B1F SINE Alu -89 60 16 2 1036 661 186 176 24 chr1 59123474 59123639 -138071793 - B4 SINE B4 0 292 103 2 1036 440 301 73 0 chr1 59124367 59124503 -138070929 - RSINE1 SINE B4 -17 148 3 2 1036 386 110 82 0 chr1 59125189 59125262 -138070170 + Lx9 LINE L1 7503 7581 -63 2 1036 27 29 0 0 chr1 59125266 59125300 -138070132 + AT_rich Low_complexity Low_complexity 1 34 0 2 1036 411 235 166 4 chr1 59126421 59126556 -138068876 - ID_B1 SINE B4 0 224 78 2 1036 1010 289 121 48 chr1 59126990 59127796 -138067636 + L1MA4 LINE L1 4666 5515 -365 2 1036 1634 234 109 31 chr1 59128284 59128916 -138066516 + RMER1B Other Other 44 509 -557 2 1036 5055 177 21 12 chr1 59128917 59129768 -138065664 + Lx5 LINE L1 6184 7042 -8 2 1036 397 301 53 59 chr1 59129893 59130213 -138065219 + L1MA4 LINE L1 5674 6027 -273 2 1036 464 264 55 0 chr1 59130437 59130547 -138064885 - RSINE1 SINE B4 -37 128 13 2 1036 735 271 66 30 chr1 59130743 59130941 -138064491 - B3 SINE B2 0 216 12 2 1036 480 35 0 0 chr1 59131151 59131209 -138064223 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1036 219 114 0 0 chr1 59131209 59131244 -138064188 + (CCTG)n Simple_repeat Simple_repeat 1 35 0 2 1036 1450 68 17 6 chr1 59131622 59131799 -138063633 + B2_Mm2 SINE B2 2 180 -15 2 1036 279 157 0 0 chr1 59132591 59132642 -138062790 + GA-rich Low_complexity Low_complexity 3 53 0 2 1036 472 262 56 0 chr1 59132677 59132784 -138062648 + PB1D10 SINE Alu 5 117 0 2 1036 247 25 50 0 chr1 59132784 59132824 -138062608 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1036 293 318 14 92 chr1 59132996 59133138 -138062294 + MLT1G1 LTR MaLR 79 209 -370 2 1036 274 215 63 0 chr1 59133648 59133727 -138061705 - Lx5 LINE L1 -1 7049 6966 2 1036 234 97 0 0 chr1 59133732 59133763 -138061669 + Lx5 LINE L1 6658 6688 -362 2 1036 785 202 124 31 chr1 59133848 59134042 -138061390 + B3 SINE B2 1 212 -4 2 1036 396 0 0 0 chr1 59134056 59134100 -138061332 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1036 342 0 0 0 chr1 59134100 59134137 -138061295 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1036 639 242 15 22 chr1 59134145 59134280 -138061152 - RSINE1 SINE B4 -28 137 4 2 1036 663 104 0 70 chr1 59134850 59134964 -138060468 + BC1_Mm scRNA scRNA 1 106 -46 2 1036 1905 277 62 4 chr1 59135903 59136439 -138058993 + Lx9 LINE L1 6597 7163 -481 2 1036 482 325 60 12 chr1 59136929 59137178 -138058254 + Lx9 LINE L1 7205 7465 -179 2 1036 291 275 143 19 chr1 59137207 59137529 -138057903 + L1MC4 LINE L1 984 1345 -4870 2 1036 2153 204 120 10 chr1 59138384 59138975 -138056457 - L1M2 LINE L1 -1564 4579 3924 2 1036 43 35 0 0 chr1 59138990 59139047 -138056385 + AT_rich Low_complexity Low_complexity 1 57 0 2 1036 249 135 0 0 chr1 59139081 59139133 -138056299 + (TTATA)n Simple_repeat Simple_repeat 3 54 0 2 1036 416 341 36 40 chr1 59139178 59139401 -138056031 + L1MDa LINE L1 595 816 -5817 2 1036 295 161 36 0 chr1 59139435 59139491 -138055941 + L1MD LINE L1 2834 2891 -3255 2 1036 599 252 0 64 chr1 59139733 59139873 -138055559 + ID_B1 SINE B4 80 210 -14 2 1036 615 307 117 10 chr1 59139901 59140191 -138055241 - L1M3 LINE L1 -1823 4317 3997 2 1036 1112 271 71 34 chr1 59140187 59140330 -138055102 + L1MA7 LINE L1 5666 5821 -470 2 1036 1188 0 0 0 chr1 59140330 59140462 -138054970 + (GGGAGA)n Simple_repeat Simple_repeat 3 134 0 2 1036 1112 271 71 34 chr1 59140462 59140757 -138054675 + L1MA7 LINE L1 5822 6120 -171 2 1036 417 331 15 0 chr1 59141051 59141181 -138054251 - B1F SINE Alu -17 132 1 2 1036 189 175 0 0 chr1 59141812 59141852 -138053580 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 1036 270 0 0 0 chr1 59142081 59142111 -138053321 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1036 950 143 47 52 chr1 59142377 59142569 -138052863 + B2_Mm2 SINE B2 3 193 -2 2 1036 216 140 0 39 chr1 59142625 59142677 -138052755 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2 1036 420 293 133 70 chr1 59142682 59142840 -138052592 + B4A SINE B4 123 290 -2 2 1036 540 296 29 42 chr1 59143102 59143313 -138052119 - ID_B1 SINE B4 -62 230 29 2 1036 533 292 148 39 chr1 59143492 59143802 -138051630 - MLT1D LTR MaLR -110 395 52 2 1036 672 254 129 41 chr1 59143940 59144267 -138051165 + L1M3c LINE L1 1868 2237 -4800 2 1036 2752 110 31 13 chr1 59144267 59144653 -138050779 + ORR1B1 LTR MaLR 2 394 0 2 1036 672 253 135 42 chr1 59144653 59144688 -138050744 + L1M3c LINE L1 2238 2270 -4767 2 1036 382 292 140 20 chr1 59144865 59145096 -138050336 + L1M3c LINE L1 2782 3042 -4066 2 1036 1196 64 0 0 chr1 59145096 59145230 -138050202 + B1_Mus2 SINE Alu 1 134 -13 2 1036 254 98 0 19 chr1 59145230 59145282 -138050150 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 1036 382 292 140 20 chr1 59145287 59145398 -138050034 + L1M3c LINE L1 3043 3165 -3943 2 1036 254 294 9 0 chr1 59145406 59145470 -138049962 + B1F1 SINE Alu 1 68 -81 2 1036 407 270 110 6 chr1 59145479 59145643 -138049789 + L1M3c LINE L1 3340 3520 -3580 2 1036 2586 118 13 3 chr1 59145685 59146069 -138049363 - MTC LTR MaLR -7 414 27 2 1036 1164 259 118 33 chr1 59146116 59146716 -138048716 + L1M3c LINE L1 3511 4161 -2942 2 1036 1196 211 5 19 chr1 59146773 59146985 -138048447 - B3 SINE B2 -6 210 2 2 1036 21 0 0 0 chr1 59146988 59147009 -138048423 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 285 362 9 0 chr1 59147460 59147565 -138047867 - PB1D10 SINE Alu -9 108 3 2 1036 231 233 16 16 chr1 59147715 59147776 -138047656 + B4 SINE B4 25 85 -207 2 1036 920 204 5 27 chr1 59147873 59148059 -138047373 + ORR1D1 LTR MaLR 2 183 -191 2 1036 617 127 60 0 chr1 59148059 59148193 -138047239 + CT-rich Low_complexity Low_complexity 2 143 0 2 1036 952 173 91 30 chr1 59148193 59148390 -138047042 + ORR1D1 LTR MaLR 166 374 0 2 1036 1191 234 248 0 chr1 59148390 59148682 -138046750 - MTD LTR MaLR -36 383 18 2 1036 29 0 0 0 chr1 59148708 59148737 -138046695 + AT_rich Low_complexity Low_complexity 1 29 0 2 1036 563 299 54 24 chr1 59148800 59148968 -138046464 - ID_B1 SINE B4 -46 178 6 2 1036 925 236 48 33 chr1 59148989 59149326 -138046106 + RLTR15 LTR ERVK 1 342 -17 2 1036 984 177 0 5 chr1 59149538 59149975 -138045457 + (TG)n Simple_repeat Simple_repeat 1 434 0 2 1036 593 252 147 6 chr1 59149986 59150142 -138045290 - B3A SINE B2 -16 182 5 2 1036 23 0 0 0 chr1 59150411 59150434 -138044998 + AT_rich Low_complexity Low_complexity 1 23 0 2 1036 612 176 86 23 chr1 59150591 59150719 -138044713 - B1_Mur3 SINE Alu 0 149 14 2 1036 436 231 47 19 chr1 59150628 59150734 -138044698 - MT2B LTR ERVL -332 269 161 2 1036 308 209 129 75 chr1 59150864 59150957 -138044475 + B1F1 SINE Alu 30 127 -22 2 1036 694 193 0 0 chr1 59153007 59153121 -138042311 + PB1D9 SINE Alu 5 118 -2 2 1036 615 272 78 0 chr1 59153543 59153723 -138041709 - MLT1A1 LTR MaLR -47 361 168 2 1036 219 143 123 18 chr1 59153807 59153864 -138041568 + RSINE1 SINE B4 67 129 -36 2 1036 23 33 0 0 chr1 59153899 59153929 -138041503 + AT_rich Low_complexity Low_complexity 1 30 0 2 1036 414 315 26 47 chr1 59153963 59154196 -138041236 - RMER2 LTR ERV1 0 567 340 2 1036 303 278 0 0 chr1 59154744 59154816 -138040616 + B3A SINE B2 7 78 -120 2 1036 437 279 124 19 chr1 59154956 59155117 -138040315 + B3A SINE B2 16 193 -5 2 1036 254 242 0 46 chr1 59155182 59155247 -138040185 + RSINE1 SINE B4 68 129 -36 2 1036 276 154 0 0 chr1 59155291 59155343 -138040089 + (ATG)n Simple_repeat Simple_repeat 2 53 0 2 1036 364 352 74 38 chr1 59155868 59156285 -138039147 - MLT1E2 LTR MaLR -37 468 37 2 1036 259 295 16 0 chr1 59157026 59157087 -138038345 + ID2 SINE ID 2 63 -20 2 1036 375 273 82 8 chr1 59157207 59157329 -138038103 - ID_B1 SINE B4 -1 223 93 2 1036 30 0 0 0 chr1 59157744 59157774 -138037658 + AT_rich Low_complexity Low_complexity 1 30 0 2 1036 25 51 0 0 chr1 59158665 59158704 -138036728 + AT_rich Low_complexity Low_complexity 1 39 0 2 1036 975 265 57 29 chr1 59158868 59159148 -138036284 - B4A SINE B4 -4 288 1 2 1036 235 276 79 0 chr1 59159302 59159378 -138036054 - RLTR22_Mus LTR ERVK -474 1334 1253 2 1036 4733 57 0 0 chr1 59159662 59160240 -138035192 + L1Md_F2 LINE L1 5009 5586 -297 2 1036 8897 34 4 0 chr1 59160241 59161232 -138034200 + L1Md_F2 LINE L1 5588 6582 0 2 1036 254 279 67 9 chr1 59161733 59161838 -138033594 + HERVL40-int LTR ERVL 5323 5433 -97 2 1036 463 275 91 0 chr1 59163069 59163211 -138032221 + ID_B1 SINE B4 74 224 0 2 1036 453 319 14 21 chr1 59163980 59164124 -138031308 + ID_B1 SINE B4 81 223 -1 2 1036 225 0 0 0 chr1 59164459 59164484 -138030948 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1036 453 268 115 23 chr1 59164496 59164626 -138030806 - RSINE1 SINE B4 -23 142 1 2 1036 336 233 131 29 chr1 59164641 59164778 -138030654 + MLT1C LTR MaLR 5 155 -235 2 1036 439 242 94 0 chr1 59165094 59165243 -138030189 + Lx5 LINE L1 6885 7047 -3 2 1036 23 54 0 0 chr1 59165676 59165713 -138029719 + AT_rich Low_complexity Low_complexity 1 37 0 2 1036 211 294 56 47 chr1 59166117 59166224 -138029208 + MIRc SINE MIR 14 121 -147 2 1036 213 134 73 15 chr1 59166372 59166440 -138028992 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1036 203 116 0 44 chr1 59166633 59166678 -138028754 + T-rich Low_complexity Low_complexity 1 43 0 2 1036 539 175 219 0 chr1 59167068 59167182 -138028250 - B1_Mur2 SINE Alu -6 143 5 2 1036 26 50 0 0 chr1 59167236 59167276 -138028156 + AT_rich Low_complexity Low_complexity 1 40 0 3 1036 256 265 26 113 chr1 59167278 59167393 -138028039 + MT2B LTR ERVL 153 257 -344 3 1036 711 236 0 14 chr1 59167292 59167438 -138027994 + B1_Mur1 SINE Alu 6 149 0 3 1036 518 296 189 38 chr1 59167461 59167934 -138027498 - MER68 LTR ERVL -18 545 2 3 1036 556 233 173 11 chr1 59168153 59168344 -138027088 + ID_B1 SINE B4 2 223 -1 3 1036 304 275 118 11 chr1 59168889 59169008 -138026424 - PB1D10 SINE Alu 0 127 1 3 1036 812 315 87 12 chr1 59169628 59170043 -138025389 + MLT1C LTR MaLR 6 451 -16 3 1036 260 255 164 36 chr1 59170394 59170504 -138024928 - B1F SINE Alu -6 143 20 3 1036 214 270 109 80 chr1 59170504 59170529 -138024903 - ID_B1 SINE B4 -4 218 80 3 1036 185 0 0 39 chr1 59170713 59170739 -138024693 + (TCTCCC)n Simple_repeat Simple_repeat 6 30 0 3 1036 22 56 0 0 chr1 59171988 59172024 -138023408 + AT_rich Low_complexity Low_complexity 1 36 0 3 1036 226 330 26 18 chr1 59173334 59173448 -138021984 + RMER12 LTR ERVK 742 856 -466 3 1036 357 159 0 0 chr1 59173480 59173543 -138021889 + GA-rich Low_complexity Low_complexity 1 63 0 3 1036 571 304 12 0 chr1 59173553 59173714 -138021718 - RSINE1 SINE B4 0 165 3 3 1036 233 179 86 35 chr1 59173749 59173807 -138021625 + MLT1I LTR MaLR 347 407 -4 3 1036 397 277 27 0 chr1 59173945 59174057 -138021375 - PB1 SINE Alu -7 120 6 3 1036 203 268 0 0 chr1 59174213 59174254 -138021178 + polypurine Low_complexity Low_complexity 2 42 0 3 1036 222 254 0 0 chr1 59175246 59175313 -138020119 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1036 679 211 114 0 chr1 59175782 59175948 -138019484 + B3 SINE B2 11 195 -21 3 1036 1227 61 0 0 chr1 59175968 59176116 -138019316 - B1_Mus1 SINE Alu 0 148 1 3 1036 210 91 0 0 chr1 59176622 59176655 -138018777 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 3 1036 500 266 0 0 chr1 59178436 59178545 -138016887 - PB1D10 SINE Alu -7 110 2 3 1036 256 202 163 33 chr1 59178695 59178753 -138016679 + U6 snRNA snRNA 4 74 -33 3 1036 1175 74 0 7 chr1 59178753 59178902 -138016530 + B1_Mus1 SINE Alu 1 148 0 3 1036 256 202 163 33 chr1 59178902 59178935 -138016497 + U6 snRNA snRNA 75 107 0 3 1036 441 0 0 0 chr1 59179016 59179065 -138016367 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1036 458 206 167 0 chr1 59179071 59179173 -138016259 - RSINE1 SINE B4 -45 120 2 3 1036 451 43 0 28 chr1 59179208 59179280 -138016152 + (CAGAGA)n Simple_repeat Simple_repeat 6 75 0 3 1036 306 0 0 0 chr1 59179313 59179347 -138016085 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1036 288 70 0 0 chr1 59179347 59179390 -138016042 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1036 180 0 0 0 chr1 59179426 59179446 -138015986 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1036 298 227 78 26 chr1 59179474 59179551 -138015881 + L1ME3 LINE L1 6055 6135 -27 3 1036 912 162 0 20 chr1 59179918 59180069 -138015363 - B1_Mus1 SINE Alu 0 148 1 3 1036 368 273 57 8 chr1 59180461 59180583 -138014849 + RSINE1 SINE B4 3 130 -35 3 1036 361 217 36 12 chr1 59181636 59181720 -138013712 + MTD LTR MaLR 1 86 -335 3 1036 1780 184 26 3 chr1 59181790 59182139 -138013293 + MTD LTR MaLR 63 419 0 3 1036 1383 138 5 0 chr1 59183074 59183292 -138012140 - URR1B DNA MER1_type -5 220 2 3 1036 1295 175 174 25 chr1 59183467 59183911 -138011521 - RMER20A LTR ERVK -6 510 1 3 1036 1403 81 16 0 chr1 59184572 59184757 -138010675 + B2_Mm2 SINE B2 1 188 -7 3 1036 614 239 111 145 chr1 59184875 59185398 -138010034 - RLTR16 LTR ERVK 0 505 1 3 1036 572 262 0 8 chr1 59185423 59185550 -138009882 + RSINE1 SINE B4 3 128 -37 3 1036 515 183 113 71 chr1 59186970 59187111 -138008321 + B1_Mur2 SINE Alu 3 149 0 3 1036 251 303 119 10 chr1 59187807 59188015 -138007417 - L1MC4 LINE L1 -1311 6731 6459 3 1036 390 282 39 0 chr1 59189074 59189177 -138006255 + PB1D10 SINE Alu 1 107 -10 3 1036 1173 249 67 48 chr1 59189286 59189658 -138005774 + MTE2a LTR MaLR 1 379 0 3 1036 562 259 43 0 chr1 59190026 59190165 -138005267 - ID_B1 SINE B4 -1 223 79 3 1036 737 257 15 51 chr1 59190201 59190398 -138005034 + B3A SINE B2 5 194 -4 3 1036 295 167 29 29 chr1 59192141 59192207 -138003225 - B3 SINE B2 -1 215 150 3 1036 1280 118 70 21 chr1 59192207 59192647 -138002785 + RLTR11A LTR ERVK 2 527 -1 3 1036 423 0 0 0 chr1 59192684 59192731 -138002701 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1036 589 294 15 56 chr1 59192772 59192967 -138002465 - B4A SINE B4 -103 189 3 3 1036 1255 111 121 0 chr1 59193075 59193274 -138002158 - URR1A DNA MER1_type -2 224 2 3 1036 1346 97 16 0 chr1 59193990 59194176 -138001256 + B2_Mm2 SINE B2 5 193 -2 3 1036 208 239 22 0 chr1 59194419 59194465 -138000967 + GA-rich Low_complexity Low_complexity 3 49 0 3 1036 498 264 32 45 chr1 59194987 59195142 -138000290 + RSINE1 SINE B4 11 163 -2 3 1036 254 288 106 41 chr1 59195071 59195194 -138000238 + RMER12 LTR ERVK 721 851 -471 3 1036 576 236 0 106 chr1 59195513 59195598 -137999834 + B1F SINE Alu 1 85 -64 3 1036 1366 84 20 25 chr1 59195598 59195794 -137999638 + B2_Mm2 SINE B2 1 195 0 3 1036 576 236 0 106 chr1 59195794 59195869 -137999563 + B1F SINE Alu 86 144 -5 3 1036 837 291 146 8 chr1 59196844 59197222 -137998210 + Lx8 LINE L1 6471 6900 -573 3 1036 215 140 0 20 chr1 59197266 59197317 -137998115 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 3 1036 188 305 71 31 chr1 59197422 59197520 -137997912 + MIRb SINE MIR 83 184 -84 3 1036 301 233 136 0 chr1 59198832 59198935 -137996497 + ID_B1 SINE B4 105 221 -3 3 1036 328 258 0 0 chr1 59199377 59199443 -137995989 + ID4_ SINE ID 5 70 -13 3 1036 726 183 18 0 chr1 59199443 59199612 -137995820 + GA-rich Low_complexity Low_complexity 1 172 0 3 1036 537 218 0 38 chr1 59199574 59199760 -137995672 + A-rich Low_complexity Low_complexity 2 180 0 3 1036 407 206 315 43 chr1 59199768 59199930 -137995502 + B3 SINE B2 3 208 -8 3 1036 342 0 0 0 chr1 59199932 59199970 -137995462 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1036 1348 233 138 3 chr1 59200135 59200497 -137994935 + MTD LTR MaLR 1 411 -8 3 1036 224 333 109 19 chr1 59200929 59201140 -137994292 + L2 LINE L2 758 987 -2432 3 1036 287 206 168 32 chr1 59201184 59201279 -137994153 - MLT1A1 LTR MaLR -298 110 3 3 1036 1964 281 128 19 chr1 59201874 59202595 -137992837 + Lx8 LINE L1 6418 7216 -257 3 1036 374 165 13 0 chr1 59202649 59202728 -137992704 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1036 235 154 0 71 chr1 59202871 59202927 -137992505 + Lx8 LINE L1 7414 7465 -8 3 1036 387 127 0 0 chr1 59203328 59203391 -137992041 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1036 28 0 0 0 chr1 59203770 59203798 -137991634 + AT_rich Low_complexity Low_complexity 1 28 0 3 1036 2246 162 52 7 chr1 59203937 59204379 -137991053 + MYSERV16_I-int LTR ERVK 1841 2302 -24 3 1036 980 213 75 65 chr1 59204425 59204792 -137990640 + RLTR20C LTR ERVK 1 457 -94 3 1036 180 0 0 0 chr1 59204792 59204812 -137990620 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1036 529 218 82 13 chr1 59204812 59204903 -137990529 + RLTR20C LTR ERVK 458 550 -1 3 1036 496 224 51 32 chr1 59204925 59205145 -137990287 + Lx7 LINE L1 7311 7692 -4 3 1036 327 25 0 0 chr1 59206070 59206110 -137989322 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 3 1036 729 247 0 67 chr1 59206749 59206944 -137988488 + B3A SINE B2 1 182 -16 3 1036 554 252 22 7 chr1 59207442 59207578 -137987854 + B1F SINE Alu 12 149 0 3 1036 526 173 17 43 chr1 59207610 59207725 -137987707 + B3A SINE B2 1 112 -86 3 1036 194 319 100 14 chr1 59207860 59208000 -137987432 - L2 LINE L2 -896 2523 2372 3 1036 324 0 0 0 chr1 59208100 59208136 -137987296 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1036 1192 99 60 6 chr1 59208190 59208372 -137987060 + B2_Mm2 SINE B2 2 193 -2 3 1036 245 247 148 0 chr1 59209166 59209247 -137986185 + RLTR13D3 LTR ERVK 1 93 -1021 3 1036 322 160 0 0 chr1 59209769 59209819 -137985613 + T-rich Low_complexity Low_complexity 6 55 0 3 1036 3435 34 29 0 chr1 59209971 59210384 -137985048 - L1Md_F2 LINE L1 -2 6580 6156 3 1036 6380 62 0 1 chr1 59210385 59211177 -137984255 + L1_Mm LINE L1 4481 5271 -612 3 1036 334 197 112 73 chr1 59211194 59211349 -137984083 + RLTR13D3 LTR ERVK 983 1114 0 3 1036 263 264 22 0 chr1 59211748 59211839 -137983593 + (TCTG)n Simple_repeat Simple_repeat 2 94 0 3 1036 547 244 0 30 chr1 59211850 59211981 -137983451 - ID_B1 SINE B4 -6 218 92 3 1036 1400 215 60 41 chr1 59211991 59212359 -137983073 + ORR1C2 LTR MaLR 5 379 -5 3 1036 253 221 59 0 chr1 59212356 59212424 -137983008 - ID_B1 SINE B4 -128 96 25 3 1036 673 230 0 18 chr1 59214764 59214928 -137980504 - RSINE1 SINE B4 -2 163 3 3 1036 266 170 0 0 chr1 59214965 59215012 -137980420 - RSINE1 SINE B4 -33 132 86 3 1036 591 189 16 8 chr1 59215843 59215966 -137979466 - RSINE1 SINE B4 -38 127 4 3 1036 25 0 0 0 chr1 59216433 59216458 -137978974 + AT_rich Low_complexity Low_complexity 1 25 0 3 1036 254 304 54 11 chr1 59216624 59216717 -137978715 - MLT1J LTR MaLR -189 323 227 3 1036 929 124 14 7 chr1 59216880 59217026 -137978406 + B1_Mur4 SINE Alu 4 150 0 3 1036 879 244 9 23 chr1 59217397 59217611 -137977821 - ID_B1 SINE B4 -4 220 10 3 1036 407 229 140 67 chr1 59217843 59217993 -137977439 + RSINE1 SINE B4 3 163 -2 3 1036 521 203 130 0 chr1 59218718 59218841 -137976591 - ID_B1 SINE B4 0 224 86 3 1036 4304 181 113 27 chr1 59222223 59223173 -137972259 + Lx7 LINE L1 5834 6864 -832 3 1036 504 208 158 0 chr1 59223607 59223727 -137971705 + Lx7 LINE L1 7558 7696 0 3 1036 233 350 0 0 chr1 59223776 59223856 -137971576 + PB1D7 SINE Alu 6 85 -35 4 1036 498 17 0 0 chr1 59223936 59223995 -137971437 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 4 1036 2398 186 45 45 chr1 59225496 59226030 -137969402 + RMER5 LTR ERV1 1 534 0 4 1036 2916 94 40 27 chr1 59227439 59227885 -137967547 + Lx3A LINE L1 6525 6976 -5 4 1036 1063 102 0 0 chr1 59228198 59228335 -137967097 - B1_Mus1 SINE Alu -11 137 1 4 1036 520 163 48 41 chr1 59228790 59228937 -137966495 + URR1A DNA MER1_type 79 226 0 4 1036 396 291 0 55 chr1 59230562 59230671 -137964761 - PB1D10 SINE Alu -2 115 13 4 1036 242 250 67 0 chr1 59230622 59230682 -137964750 - B4A SINE B4 -146 146 83 4 1036 3574 15 2 0 chr1 59230722 59231117 -137964315 - MTA_Mm LTR MaLR 0 396 1 4 1036 446 203 230 6 chr1 59231200 59231378 -137964054 + L1MA4A LINE L1 6085 6302 -1 4 1036 548 226 9 0 chr1 59231385 59231500 -137963932 + PB1D7 SINE Alu 5 120 0 4 1036 516 289 24 24 chr1 59232310 59232321 -137963111 - B3 SINE B2 -11 205 195 4 1036 234 0 0 0 chr1 59232321 59232347 -137963085 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1036 516 289 24 24 chr1 59232347 59232505 -137962927 - B3 SINE B2 -22 194 36 4 1036 248 176 20 0 chr1 59232989 59233040 -137962392 - B3 SINE B2 -163 53 2 4 1036 1336 32 0 19 chr1 59233264 59233425 -137962007 - L1_Mus1 LINE L1 -82 6485 6328 4 1036 1112 87 10 71 chr1 59233442 59233640 -137961792 - B2_Mm1t SINE B2 -5 188 3 4 1036 715 239 33 1 chr1 59233908 59234065 -137961367 + B3A SINE B2 2 161 -34 4 1036 300 27 0 0 chr1 59234065 59234102 -137961330 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1036 425 246 78 72 chr1 59234102 59234137 -137961295 + B2_Mm2 SINE B2 162 195 0 4 1036 220 256 0 0 chr1 59234382 59234425 -137961007 + G-rich Low_complexity Low_complexity 1 43 0 4 1036 281 275 12 18 chr1 59235209 59235372 -137960060 + (CTGTG)n Simple_repeat Simple_repeat 4 165 0 4 1036 233 284 13 13 chr1 59235678 59235753 -137959679 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 1036 1192 54 0 0 chr1 59236078 59236226 -137959206 + B1_Mus1 SINE Alu 1 148 0 4 1036 356 280 26 53 chr1 59237154 59237305 -137958127 + B1F SINE Alu 3 149 0 4 1036 310 202 141 12 chr1 59237754 59237839 -137957593 + PB1D9 SINE Alu 22 117 -3 4 1036 277 294 53 44 chr1 59237992 59238106 -137957326 + PB1D7 SINE Alu 6 120 0 4 1036 734 165 68 0 chr1 59238225 59238358 -137957074 + B1_Mur2 SINE Alu 2 143 -6 4 1036 23 0 0 0 chr1 59238389 59238412 -137957020 + AT_rich Low_complexity Low_complexity 1 23 0 4 1036 580 264 25 12 chr1 59238422 59238583 -137956849 - RSINE1 SINE B4 0 165 3 4 1036 222 300 12 59 chr1 59238618 59238703 -137956729 + PB1D10 SINE Alu 5 85 -32 4 1036 700 282 32 46 chr1 59239066 59239285 -137956147 + ID_B1 SINE B4 9 224 0 4 1036 375 118 71 120 chr1 59239489 59239589 -137955843 - PB1D10 SINE Alu -51 98 6 4 1036 644 228 12 19 chr1 59239697 59239858 -137955574 + B3A SINE B2 1 160 -38 4 1036 240 86 0 0 chr1 59239863 59239898 -137955534 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1036 1545 37 103 0 chr1 59240902 59241116 -137954316 + MTA_Mm LTR MaLR 161 396 0 4 1036 1100 80 0 0 chr1 59241212 59241350 -137954082 + B1_Mus1 SINE Alu 1 138 -10 4 1036 309 51 0 0 chr1 59241350 59241389 -137954043 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1036 312 233 32 85 chr1 59241409 59241503 -137953929 + RSINE1 SINE B4 11 99 -66 4 1036 185 94 0 30 chr1 59241549 59241582 -137953850 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4 1036 357 225 0 0 chr1 59241697 59241768 -137953664 + ID4 SINE ID 3 73 -10 4 1036 290 267 44 0 chr1 59241768 59241787 -137953645 + ID_B1 SINE B4 3 96 -128 4 1036 328 259 94 0 chr1 59242665 59242750 -137952682 + PB1D10 SINE Alu 25 117 0 4 1037 744 278 72 40 chr1 59245068 59245417 -137950015 - Charlie1a DNA MER1_type -203 1252 893 4 1037 499 222 206 7 chr1 59245423 59245559 -137949873 + RSINE1 SINE B4 3 165 0 4 1037 416 251 193 4 chr1 59245625 59245853 -137949579 - Charlie1a DNA MER1_type -559 896 626 4 1037 221 267 0 48 chr1 59245871 59245934 -137949498 + PB1D10 SINE Alu 29 88 -29 4 1037 189 0 0 0 chr1 59246013 59246034 -137949398 + (GTGTG)n Simple_repeat Simple_repeat 2 22 0 4 1037 571 230 0 0 chr1 59246187 59246300 -137949132 + B3 SINE B2 91 203 -13 4 1037 693 154 32 0 chr1 59246343 59246466 -137948966 + B1_Mm SINE Alu 14 140 -7 4 1037 239 104 0 20 chr1 59246472 59246521 -137948911 + (CAAAG)n Simple_repeat Simple_repeat 1 48 0 4 1037 421 240 243 12 chr1 59246769 59246942 -137948490 + MIR SINE MIR 13 225 -37 4 1037 763 143 127 0 chr1 59246949 59247075 -137948357 + B1_Mus2 SINE Alu 5 146 -1 4 1037 338 198 22 0 chr1 59247080 59247171 -137948261 + GA-rich Low_complexity Low_complexity 2 94 0 4 1037 292 209 165 0 chr1 59247759 59247850 -137947582 - PB1D10 SINE Alu -7 110 5 4 1037 1582 37 21 0 chr1 59248453 59248642 -137946790 - B2_Mm1a SINE B2 0 193 1 4 1037 562 240 56 0 chr1 59249376 59249501 -137945931 + ID_B1 SINE B4 81 212 -12 4 1037 252 43 21 42 chr1 59249501 59249549 -137945883 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 1037 741 188 7 7 chr1 59250264 59250409 -137945023 + RMER15 LTR ERVL 1 145 -430 4 1037 852 38 0 0 chr1 59250420 59250526 -137944906 + B2_Mm2 SINE B2 2 107 -88 4 1037 836 218 34 0 chr1 59250527 59250706 -137944726 + Lx7 LINE L1 6914 7098 -598 4 1037 216 303 13 13 chr1 59252682 59252759 -137942673 + CT-rich Low_complexity Low_complexity 1 77 0 4 1037 489 248 54 20 chr1 59253430 59253578 -137941854 + B4A SINE B4 132 284 -8 4 1037 24 32 0 0 chr1 59253671 59253702 -137941730 + AT_rich Low_complexity Low_complexity 1 31 0 4 1037 464 277 72 7 chr1 59253862 59254000 -137941432 - ID_B1 SINE B4 -63 161 15 4 1037 270 278 155 9 chr1 59254435 59254551 -137940881 + ID_B1 SINE B4 85 217 -7 4 1037 1076 56 198 12 chr1 59255474 59255636 -137939796 + B2_Mm1t SINE B2 2 193 0 4 1037 367 277 122 8 chr1 59255636 59255762 -137939670 + ID_B1 SINE B4 76 216 -8 4 1037 739 133 0 45 chr1 59256358 59256492 -137938940 + B1_Mur4 SINE Alu 23 150 0 4 1037 1041 109 23 0 chr1 59256500 59256675 -137938757 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 1037 198 0 0 0 chr1 59256676 59256698 -137938734 + (GAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1037 546 215 33 46 chr1 59256797 59256948 -137938484 + B1F SINE Alu 1 149 0 4 1037 245 207 305 0 chr1 59256957 59257039 -137938393 + PB1D10 SINE Alu 4 110 -7 4 1037 853 286 214 52 chr1 59257040 59257469 -137937963 + L1MA6 LINE L1 5019 5513 -787 4 1037 1522 62 16 0 chr1 59257469 59257661 -137937771 + B2_Mm2 SINE B2 1 195 0 4 1037 722 289 73 66 chr1 59257661 59257754 -137937678 + L1MA6 LINE L1 5514 5591 -709 4 1037 180 0 0 0 chr1 59257754 59257774 -137937658 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1037 722 289 73 66 chr1 59257774 59258026 -137937406 + L1MA6 LINE L1 5592 5866 -434 4 1037 358 163 17 9 chr1 59258165 59258252 -137937180 + B1_Mus2 SINE Alu 35 147 0 4 1037 525 236 56 21 chr1 59258253 59258396 -137937036 + L1MA6 LINE L1 6108 6255 -45 4 1037 252 224 52 78 chr1 59259405 59259521 -137935911 + PB1 SINE Alu 15 127 0 4 1037 254 148 274 16 chr1 59260480 59260506 -137934926 + MER5A DNA MER1_type 1 43 -146 4 1037 282 29 0 0 chr1 59260506 59260541 -137934891 + (CAG)n Simple_repeat Simple_repeat 1 35 0 4 1037 254 148 274 16 chr1 59260541 59260576 -137934856 + MER5A DNA MER1_type 44 78 -111 4 1037 351 253 323 0 chr1 59261167 59261325 -137934107 + B3 SINE B2 1 209 -7 4 1037 233 269 12 25 chr1 59261348 59261428 -137934004 + RSINE1 SINE B4 3 81 -84 4 1037 198 128 0 0 chr1 59261433 59261472 -137933960 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1037 356 236 125 54 chr1 59261485 59261597 -137933835 + PB1D10 SINE Alu 1 120 0 4 1037 228 338 0 0 chr1 59261945 59262016 -137933416 - ID4_ SINE ID -11 72 2 4 1037 455 270 29 21 chr1 59262027 59262167 -137933265 - B1F SINE Alu -7 142 2 4 1037 372 259 182 15 chr1 59262293 59262430 -137933002 + B3A SINE B2 2 161 -37 4 1037 287 271 169 0 chr1 59263571 59263689 -137931743 + B1F SINE Alu 1 138 -11 4 1037 216 250 76 38 chr1 59263719 59263798 -137931634 + B1F1 SINE Alu 1 82 -67 4 1037 249 270 112 4 chr1 59264949 59265043 -137930389 + B1F1 SINE Alu 1 103 -17 4 1037 192 40 0 0 chr1 59265461 59265486 -137929946 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1037 706 193 14 43 chr1 59265486 59265627 -137929805 - B1_Mur1 SINE Alu -11 138 2 4 1037 522 176 160 0 chr1 59266260 59266377 -137929055 + B1F SINE Alu 5 141 -8 4 1037 209 33 33 0 chr1 59266377 59266407 -137929025 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1037 907 205 137 0 chr1 59266588 59266778 -137928654 + B3 SINE B2 1 216 0 4 1037 576 236 21 7 chr1 59266865 59267010 -137928422 - B1_Mur2 SINE Alu -2 147 1 4 1037 1208 41 0 20 chr1 59267132 59267282 -137928150 + B1_Mm SINE Alu 1 147 0 4 1037 3622 59 7 4 chr1 59267385 59267847 -137927585 - L1Md_F3 LINE L1 0 6584 6122 4 1037 296 247 156 0 chr1 59268434 59268511 -137926921 + B1F SINE Alu 20 108 -41 4 1037 299 228 0 60 chr1 59268721 59268805 -137926627 + PB1D10 SINE Alu 32 110 -7 4 1037 800 231 35 0 chr1 59269370 59269543 -137925889 + B3A SINE B2 3 181 -17 4 1037 274 164 21 64 chr1 59269641 59269732 -137925700 + B1F SINE Alu 61 147 -2 4 1037 267 254 17 0 chr1 59269785 59269844 -137925588 + L2b LINE L2 3308 3367 -8 4 1037 900 0 0 0 chr1 59270070 59270170 -137925262 + (GGGGA)n Simple_repeat Simple_repeat 3 102 0 5 1037 194 222 19 0 chr1 59270218 59270272 -137925160 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 5 1037 276 191 0 0 chr1 59270302 59270349 -137925083 - ID4 SINE ID -28 55 9 5 1037 182 37 0 36 chr1 59271363 59271391 -137924041 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 5 1037 377 252 91 0 chr1 59271403 59271502 -137923930 - B1F SINE Alu -29 120 13 5 1037 279 223 87 0 chr1 59273159 59273262 -137922170 - BC1_Mm scRNA scRNA -40 112 1 5 1037 526 209 0 0 chr1 59273361 59273466 -137921966 - B1F SINE Alu -4 145 41 5 1037 406 261 30 48 chr1 59273530 59273695 -137921737 - RSINE1 SINE B4 0 165 4 5 1037 302 250 25 12 chr1 59273805 59273886 -137921546 + ID4_ SINE ID 2 83 0 5 1037 32 43 0 0 chr1 59274003 59274049 -137921383 + AT_rich Low_complexity Low_complexity 1 46 0 5 1037 24 0 0 0 chr1 59274147 59274171 -137921261 + AT_rich Low_complexity Low_complexity 1 24 0 5 1037 231 222 32 0 chr1 59274613 59274676 -137920756 + Charlie11 DNA MER1_type 2118 2182 -14 5 1037 243 0 0 0 chr1 59274938 59274965 -137920467 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1037 525 261 50 17 chr1 59275455 59275634 -137919798 - L1MA5 LINE L1 -2 6298 6114 5 1037 216 326 102 0 chr1 59275634 59275732 -137919700 + PB1D7 SINE Alu 1 108 -12 5 1037 211 154 51 0 chr1 59275742 59275781 -137919651 + GA-rich Low_complexity Low_complexity 1 41 0 5 1037 1077 235 105 44 chr1 59275882 59276243 -137919189 - L1MA5 LINE L1 -317 5983 5601 5 1037 656 187 24 0 chr1 59276468 59276591 -137918841 - B1_Mur1 SINE Alu -11 138 13 5 1037 733 173 38 0 chr1 59276716 59276849 -137918583 + B1_Mus1 SINE Alu 1 138 -10 5 1037 405 0 0 0 chr1 59276849 59276894 -137918538 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 1037 730 222 295 4 chr1 59277658 59277916 -137917516 + ORR1D1 LTR MaLR 34 366 -8 5 1037 210 309 47 23 chr1 59278549 59278565 -137916867 + ID SINE ID 70 87 -137 5 1037 279 276 92 0 chr1 59278565 59278635 -137916797 + B1F SINE Alu 3 79 -70 5 1037 392 276 27 2 chr1 59278635 59278748 -137916684 + PB1D10 SINE Alu 1 127 0 5 1037 246 184 41 0 chr1 59278769 59278818 -137916614 + PB1 SINE Alu 77 127 0 5 1037 195 139 0 0 chr1 59278895 59278931 -137916501 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1037 312 91 0 0 chr1 59279302 59279346 -137916086 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1037 1154 75 0 0 chr1 59279346 59279493 -137915939 - B1_Mus1 SINE Alu 0 148 2 5 1037 472 259 137 0 chr1 59279753 59279884 -137915548 + B1F SINE Alu 1 149 0 5 1037 518 213 73 7 chr1 59279928 59280065 -137915367 + B3A SINE B2 10 155 -43 5 1037 360 0 0 0 chr1 59280079 59280119 -137915313 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1037 692 255 12 42 chr1 59280148 59280316 -137915116 + RSINE1 SINE B4 3 165 0 5 1037 651 221 131 17 chr1 59280602 59280777 -137914655 + ID_B1 SINE B4 4 198 -26 5 1037 338 277 45 0 chr1 59280847 59280959 -137914473 - PB1D10 SINE Alu 0 117 1 5 1037 400 14 72 0 chr1 59281760 59281829 -137913603 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 1037 1101 67 0 22 chr1 59281830 59282014 -137913418 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1037 990 125 40 29 chr1 59282018 59282191 -137913241 + B2_Mm1t SINE B2 5 179 -14 5 1037 348 107 14 18 chr1 59282222 59282288 -137913144 + B2_Mm2 SINE B2 46 116 -82 5 1037 239 95 23 23 chr1 59282284 59282327 -137913105 - U2 snRNA snRNA -145 43 1 5 1037 796 68 246 0 chr1 59282363 59282481 -137912951 - B1_Mus1 SINE Alu 0 148 2 5 1037 303 250 31 0 chr1 59282563 59282627 -137912805 + PB1D10 SINE Alu 10 75 -42 5 1037 281 293 126 93 chr1 59282679 59282980 -137912452 + MER46C DNA MER2_type 27 337 -1 5 1037 649 127 7 29 chr1 59282993 59283131 -137912301 + GA-rich Low_complexity Low_complexity 4 138 0 5 1037 1735 21 0 0 chr1 59283148 59283341 -137912091 + B2_Mm1t SINE B2 1 193 0 5 1037 793 19 9 9 chr1 59283346 59283453 -137911979 + B1_Mus2 SINE Alu 41 147 0 5 1037 250 274 16 0 chr1 59283569 59283631 -137911801 - PB1 SINE Alu -12 115 53 5 1037 351 297 17 51 chr1 59283739 59283856 -137911576 - B1F2 SINE Alu -31 118 6 5 1037 284 309 0 0 chr1 59283908 59283976 -137911456 + BC1_Mm scRNA scRNA 8 75 -77 5 1037 525 291 32 0 chr1 59284043 59284201 -137911231 + RSINE1 SINE B4 1 163 -2 5 1037 349 197 126 59 chr1 59284277 59284412 -137911020 + ID_B1 SINE B4 81 224 0 5 1037 345 324 29 0 chr1 59284584 59284689 -137910743 - PB1D7 SINE Alu -12 108 1 5 1037 386 253 49 74 chr1 59285374 59285536 -137909896 - RSINE1 SINE B4 0 165 8 5 1037 1130 70 0 27 chr1 59285709 59285857 -137909575 + B1_Mus1 SINE Alu 5 148 0 5 1037 21 0 0 0 chr1 59286344 59286365 -137909067 + AT_rich Low_complexity Low_complexity 1 21 0 5 1037 340 250 167 0 chr1 59287304 59287412 -137908020 + PB1 SINE Alu 1 126 -1 5 1037 21 0 0 0 chr1 59287616 59287637 -137907795 + AT_rich Low_complexity Low_complexity 1 21 0 5 1037 657 262 70 85 chr1 59287660 59287883 -137907549 + B4A SINE B4 3 209 -83 5 1037 471 87 0 0 chr1 59287883 59287952 -137907480 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 5 1037 657 262 70 85 chr1 59287952 59287999 -137907433 + B4A SINE B4 210 269 -23 5 1037 207 0 0 0 chr1 59287999 59288022 -137907410 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1037 421 266 35 9 chr1 59288022 59288136 -137907296 + PB1D10 SINE Alu 1 117 0 5 1037 262 203 108 0 chr1 59288612 59288686 -137906746 + RSINE1 SINE B4 77 158 -7 5 1037 460 176 83 9 chr1 59288862 59288971 -137906461 - ID_B1 SINE B4 -10 214 98 5 1037 1607 26 5 26 chr1 59288982 59289176 -137906256 - B2_Mm1t SINE B2 -3 190 1 5 1037 297 0 0 0 chr1 59289293 59289326 -137906106 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1037 231 257 75 56 chr1 59289343 59289450 -137905982 - B1F SINE Alu -21 128 20 5 1037 250 212 15 61 chr1 59289449 59289547 -137905885 - B1_Mur2 SINE Alu -13 136 66 5 1037 267 253 25 25 chr1 59289553 59289634 -137905798 - B1_Mus2 SINE Alu -27 120 40 5 1037 668 162 66 7 chr1 59289655 59289792 -137905640 + B1_Mur3 SINE Alu 2 146 -3 5 1037 308 294 19 10 chr1 59289788 59289891 -137905541 + PB1D7 SINE Alu 1 104 -16 5 1037 186 71 0 0 chr1 59289899 59289927 -137905505 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1037 611 224 52 174 chr1 59289927 59290214 -137905218 + MTD LTR MaLR 154 405 -14 5 1037 234 0 0 0 chr1 59290238 59290264 -137905168 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1037 260 286 0 94 chr1 59290398 59290483 -137904949 + ID_B1 SINE B4 131 207 -17 5 1037 477 152 0 0 chr1 59290599 59290698 -137904734 + Lx LINE L1 6556 6654 0 5 1037 309 316 21 0 chr1 59290736 59290831 -137904601 + PB1D10 SINE Alu 11 107 -10 5 1037 198 0 0 0 chr1 59290845 59290867 -137904565 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1037 1204 62 0 0 chr1 59290867 59291013 -137904419 - B1_Mus2 SINE Alu 0 147 2 5 1037 306 0 0 0 chr1 59291113 59291147 -137904285 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1037 596 227 25 0 chr1 59291147 59291266 -137904166 - RSINE1 SINE B4 -41 124 3 5 1037 26 50 0 0 chr1 59291446 59291486 -137903946 + AT_rich Low_complexity Low_complexity 1 40 0 5 1037 1445 83 5 5 chr1 59291696 59291890 -137903542 + B2_Mm2 SINE B2 1 194 -1 5 1037 365 244 0 34 chr1 59292227 59292316 -137903116 + B1F1 SINE Alu 27 112 -37 5 1037 221 247 37 61 chr1 59292316 59292398 -137903034 + ID_B1 SINE B4 73 152 -72 5 1037 299 264 23 0 chr1 59292346 59292433 -137902999 + PB1D10 SINE Alu 19 107 -10 5 1037 4266 97 27 14 chr1 59292564 59293157 -137902275 + MT2B LTR ERVL 1 601 0 5 1037 385 256 0 0 chr1 59294412 59294490 -137900942 + ID_B1 SINE B4 86 163 -61 5 1037 368 226 104 38 chr1 59294490 59294518 -137900914 + PB1D10 SINE Alu 5 117 0 5 1037 2391 49 27 3 chr1 59296072 59296128 -137899304 - ORR1A0 LTR MaLR -8 338 279 5 1037 225 0 0 0 chr1 59296128 59296153 -137899279 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1037 2391 49 27 3 chr1 59296153 59296426 -137899006 - ORR1A0 LTR MaLR -68 278 1 5 1037 3178 249 138 20 chr1 59296468 59296556 -137898876 + Lx8 LINE L1 6314 6397 -1076 5 1037 1164 60 132 0 chr1 59296556 59296723 -137898709 - B2_Mm2 SINE B2 -4 191 3 5 1037 3178 249 138 20 chr1 59296723 59296819 -137898613 + Lx8 LINE L1 6398 6498 -975 5 1037 297 0 0 0 chr1 59296819 59296852 -137898580 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 5 1037 3178 249 138 20 chr1 59296852 59297598 -137897834 + Lx8 LINE L1 6499 7356 -117 5 1037 506 16 16 0 chr1 59297598 59297661 -137897771 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1037 3178 249 138 20 chr1 59297661 59297760 -137897672 + Lx8 LINE L1 7357 7465 -8 5 1037 434 187 226 55 chr1 59297770 59297951 -137897481 + B3 SINE B2 2 213 -3 5 1037 404 280 55 23 chr1 59298101 59298229 -137897203 - ID_B1 SINE B4 -1 223 92 5 1037 2298 66 26 65 chr1 59298344 59298683 -137896749 + ORR1A3 LTR MaLR 1 326 0 5 1037 438 315 104 27 chr1 59298734 59298956 -137896476 + MLT1H1 LTR MaLR 317 555 0 5 1037 339 347 62 10 chr1 59299033 59299225 -137896207 + MIR SINE MIR 40 241 -21 5 1037 296 355 0 9 chr1 59299232 59299343 -137896089 + PB1D10 SINE Alu 2 111 -6 5 1037 217 276 0 50 chr1 59299390 59299470 -137895962 + PB1 SINE Alu 37 112 -15 5 1037 203 188 0 20 chr1 59299471 59299520 -137895912 + GA-rich Low_complexity Low_complexity 3 50 0 5 1037 3544 35 28 12 chr1 59299550 59299979 -137895453 - RLTR10C LTR ERVK 0 436 1 5 1037 879 153 210 0 chr1 59300441 59300617 -137894815 + B3 SINE B2 4 216 0 6 1037 342 0 0 0 chr1 59300644 59300682 -137894750 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 6 1037 852 251 33 33 chr1 59300712 59300922 -137894510 - B3 SINE B2 -6 210 1 6 1037 24 32 0 0 chr1 59300930 59300961 -137894471 + AT_rich Low_complexity Low_complexity 1 31 0 6 1037 953 251 45 23 chr1 59301121 59301386 -137894046 + B4A SINE B4 4 274 -18 6 1037 864 167 7 0 chr1 59302064 59302202 -137893230 - B1_Mus2 SINE Alu -8 139 1 6 1037 230 308 22 11 chr1 59302345 59302368 -137893064 + MamRep1161 DNA TcMar 35 127 -830 6 1037 233 275 29 0 chr1 59302368 59302437 -137892995 + MamRep1161 DNA Tigger 421 491 -466 6 1037 357 102 0 0 chr1 59302444 59302503 -137892929 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1037 251 250 81 22 chr1 59302799 59302919 -137892513 + B4A SINE B4 2 131 -34 6 1037 292 257 13 13 chr1 59303012 59303096 -137892336 + BC1_Mm scRNA scRNA 7 90 -62 6 1037 479 90 13 0 chr1 59303579 59303657 -137891775 + (TATG)n Simple_repeat Simple_repeat 2 80 0 6 1037 548 236 14 28 chr1 59303667 59303811 -137891621 - ID_B1 SINE B4 -4 220 79 6 1037 1673 26 0 0 chr1 59303833 59304022 -137891410 - B2_Mm1a SINE B2 -4 189 1 6 1037 305 275 10 29 chr1 59304035 59304134 -137891298 - PB1D7 SINE Alu -3 124 29 6 1037 234 386 0 14 chr1 59304220 59304362 -137891070 + CT-rich Low_complexity Low_complexity 4 143 0 6 1037 180 0 0 0 chr1 59304647 59304667 -137890765 + (TCTTG)n Simple_repeat Simple_repeat 2 21 0 6 1037 201 39 0 0 chr1 59305070 59305096 -137890336 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1037 1183 42 0 14 chr1 59305132 59305278 -137890154 - B1_Mm SINE Alu -2 145 2 6 1037 261 0 0 0 chr1 59305300 59305329 -137890103 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6 1037 189 0 0 0 chr1 59305329 59305350 -137890082 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1037 502 247 231 13 chr1 59305685 59305923 -137889509 - Lx8 LINE L1 -4 7469 7180 6 1037 455 0 0 18 chr1 59306011 59306067 -137889365 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 6 1037 576 219 121 30 chr1 59306076 59306390 -137889042 - MT2A LTR ERVL -58 526 18 6 1037 21 0 0 0 chr1 59306446 59306467 -137888965 + AT_rich Low_complexity Low_complexity 1 21 0 6 1037 214 264 38 0 chr1 59306728 59306781 -137888651 + ID4 SINE ID 2 56 -27 6 1037 370 232 0 0 chr1 59307095 59307164 -137888268 - B1_Mur3 SINE Alu -80 69 1 6 1037 285 306 0 0 chr1 59307237 59307309 -137888123 - RSINE1 SINE B4 -38 127 56 6 1037 529 263 22 8 chr1 59307345 59307479 -137887953 + B1F1 SINE Alu 3 138 -11 6 1037 216 268 18 0 chr1 59307809 59307865 -137887567 + (CAGA)n Simple_repeat Simple_repeat 3 59 0 6 1037 350 141 56 14 chr1 59307869 59308013 -137887419 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 6 1037 252 0 0 0 chr1 59308068 59308096 -137887336 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1037 864 74 8 0 chr1 59308145 59308266 -137887166 + B2_Mm2 SINE B2 2 123 -72 6 1037 515 16 16 0 chr1 59308266 59308330 -137887102 + (TTTTC)n Simple_repeat Simple_repeat 5 69 0 6 1037 480 77 0 0 chr1 59308324 59308389 -137887043 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1037 1107 95 0 0 chr1 59308389 59308536 -137886896 - B1_Mus2 SINE Alu 0 147 1 6 1037 408 132 15 0 chr1 59308536 59308604 -137886828 + B2_Mm1t SINE B2 111 179 -14 6 1037 294 149 313 17 chr1 59308670 59308785 -137886647 + B2_Mm2 SINE B2 47 195 0 6 1037 621 40 0 0 chr1 59308792 59308868 -137886564 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 6 1037 306 274 71 12 chr1 59308868 59308953 -137886479 - PB1D10 SINE Alu -18 99 10 6 1037 385 234 21 0 chr1 59308988 59309082 -137886350 - B1F SINE Alu -51 98 3 6 1037 241 281 0 0 chr1 59309025 59309089 -137886343 - B4A SINE B4 -147 145 82 6 1037 261 303 41 132 chr1 59309347 59309613 -137885819 - RMER17C LTR ERVK -49 361 120 6 1037 525 136 39 0 chr1 59309633 59309736 -137885696 - Lx4A LINE L1 0 7058 6952 6 1037 41 0 0 0 chr1 59309896 59309937 -137885495 + AT_rich Low_complexity Low_complexity 1 41 0 6 1037 375 232 24 0 chr1 59310106 59310188 -137885244 + ID_B1 SINE B4 86 169 -55 6 1037 304 293 50 0 chr1 59310188 59310205 -137885227 + PB1D10 SINE Alu 5 108 -9 6 1037 337 324 0 0 chr1 59310324 59310429 -137885003 + G-rich Low_complexity Low_complexity 1 105 0 6 1037 339 85 0 0 chr1 59310934 59310981 -137884451 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1037 476 256 30 15 chr1 59311094 59311225 -137884207 + B1F SINE Alu 6 138 -11 6 1037 388 276 8 33 chr1 59311294 59311414 -137884018 - PB1D10 SINE Alu 0 117 1 6 1037 381 322 33 47 chr1 59311474 59311624 -137883808 - RSINE1 SINE B4 -17 148 1 6 1037 356 275 50 0 chr1 59311864 59311980 -137883452 - B1F SINE Alu -20 130 1 6 1037 2204 137 35 11 chr1 59312037 59312414 -137883018 - ORR1B1 LTR MaLR -8 386 1 6 1037 280 150 35 9 chr1 59312732 59312846 -137882586 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1037 458 253 11 0 chr1 59312871 59312962 -137882470 - PB1D10 SINE Alu -9 108 17 6 1037 432 125 0 27 chr1 59312967 59313041 -137882391 + B2_Mm2 SINE B2 1 72 -123 6 1037 377 257 29 0 chr1 59313281 59313386 -137882046 + PB1D7 SINE Alu 11 118 -2 6 1037 289 102 34 0 chr1 59314525 59314584 -137880848 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 6 1037 629 209 6 4 chr1 59314905 59315457 -137879975 + (CA)n Simple_repeat Simple_repeat 1 553 0 6 1037 1057 83 25 0 chr1 59315800 59315957 -137879475 - B2_Mm2 SINE B2 -9 186 26 6 1037 234 0 0 0 chr1 59315978 59316004 -137879428 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 1037 1180 132 11 0 chr1 59316022 59316196 -137879236 - B2_Mm2 SINE B2 -19 176 1 6 1037 232 113 32 16 chr1 59316227 59316290 -137879142 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 6 1037 422 259 95 65 chr1 59316855 59317024 -137878408 + B4A SINE B4 54 227 -65 6 1037 285 304 86 16 chr1 59317927 59318114 -137877318 - L2a LINE L2 -123 3303 3104 6 1037 3408 122 61 23 chr1 59318427 59319067 -137876365 - RLTR25A LTR ERVK -3 1100 437 6 1037 881 136 25 37 chr1 59319063 59319224 -137876208 - B2_Mm2 SINE B2 -36 159 1 6 1037 1032 279 57 136 chr1 59319428 59320192 -137875240 + L1MC3 LINE L1 6860 7585 -200 6 1037 1368 85 5 26 chr1 59320192 59320386 -137875046 + B2_Mm2 SINE B2 3 192 -3 6 1037 1032 279 57 136 chr1 59320386 59320489 -137874943 + L1MC3 LINE L1 7586 7658 -127 6 1037 526 273 15 0 chr1 59320525 59320657 -137874775 - ID_B1 SINE B4 -10 214 81 6 1037 301 259 82 22 chr1 59320657 59320791 -137874641 + L1MC3 LINE L1 7634 7775 -10 6 1037 225 237 17 17 chr1 59320799 59320859 -137874573 + ID2 SINE ID 2 61 -22 6 1037 518 197 87 43 chr1 59320972 59321110 -137874322 - B1F SINE Alu -4 145 2 6 1037 338 289 16 3 chr1 59321240 59321326 -137874106 + B1F SINE Alu 1 88 -61 6 1037 360 213 0 0 chr1 59321552 59321627 -137873805 + PB1D10 SINE Alu 43 117 0 6 1037 1174 87 4 26 chr1 59321669 59321939 -137873493 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 6 1037 202 339 65 35 chr1 59321947 59322146 -137873286 - L2a LINE L2 -536 2883 2679 6 1037 379 232 0 0 chr1 59322932 59323014 -137872418 - PB1D10 SINE Alu 0 117 36 6 1037 354 292 26 0 chr1 59323072 59323185 -137872247 - PB1D10 SINE Alu -1 116 1 6 1037 772 132 14 22 chr1 59323322 59323461 -137871971 + B1_Mur3 SINE Alu 11 148 -1 6 1037 25 0 0 0 chr1 59323564 59323589 -137871843 + AT_rich Low_complexity Low_complexity 1 25 0 6 1037 204 40 0 0 chr1 59323709 59323734 -137871698 + (CTTG)n Simple_repeat Simple_repeat 1 25 0 6 1037 8969 70 6 5 chr1 59323797 59325704 -137869728 - L1_Mus2 LINE L1 0 6566 4673 6 1037 381 301 16 16 chr1 59325709 59325834 -137869598 - ID_B1 SINE B4 -63 161 37 6 1037 1107 252 70 39 chr1 59325837 59326192 -137869240 - ORR1D2 LTR MaLR -4 366 1 6 1037 180 0 0 0 chr1 59326271 59326291 -137869141 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1037 270 0 0 0 chr1 59326813 59326843 -137868589 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1037 559 215 29 15 chr1 59327986 59328123 -137867309 - B1F SINE Alu -1 148 10 6 1037 752 221 0 7 chr1 59328157 59328307 -137867125 + B1F2 SINE Alu 1 149 0 6 1037 264 243 0 14 chr1 59328667 59328738 -137866694 - MIRc SINE MIR -124 144 75 6 1037 387 0 0 0 chr1 59328929 59328972 -137866460 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1037 24 67 0 0 chr1 59329323 59329368 -137866064 + AT_rich Low_complexity Low_complexity 1 45 0 6 1037 180 77 0 0 chr1 59329368 59329394 -137866038 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1037 448 261 50 43 chr1 59329420 59329560 -137865872 - RSINE1 SINE B4 -21 144 4 6 1037 1980 277 84 43 chr1 59329722 59330356 -137865076 - Lx8 LINE L1 -187 7286 6627 6 1037 260 274 86 34 chr1 59330651 59330768 -137864664 - MIRm SINE MIR 0 276 154 6 1037 209 259 14 54 chr1 59331041 59331188 -137864244 + (TTATA)n Simple_repeat Simple_repeat 3 143 0 6 1037 260 115 52 103 chr1 59331535 59331593 -137863839 - PB1D10 SINE Alu -1 116 62 6 1037 635 246 0 29 chr1 59331545 59331683 -137863749 - ID_B1 SINE B4 -5 219 86 6 1037 252 292 75 115 chr1 59332217 59332316 -137863116 - L2a LINE L2 -42 3384 3276 6 1037 270 81 0 0 chr1 59332316 59332353 -137863079 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1037 291 303 99 86 chr1 59332353 59333056 -137862376 - L2a LINE L2 -151 3275 2575 6 1037 492 271 21 14 chr1 59333411 59333553 -137861879 + B1F1 SINE Alu 4 146 -3 6 1037 223 270 127 0 chr1 59333635 59333698 -137861734 - ID4 SINE ID 0 83 13 7 1037 635 168 41 25 chr1 59334427 59334549 -137860883 - B1_Mur4 SINE Alu -2 148 25 7 1037 324 60 0 91 chr1 59334640 59334695 -137860737 - HAL1-3A_ME LINE L1 -836 2022 1973 7 1037 297 188 0 0 chr1 59334698 59334778 -137860654 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1037 352 174 101 0 chr1 59334781 59334850 -137860582 - ID4 SINE ID -6 77 2 7 1037 795 232 97 19 chr1 59335322 59335590 -137859842 - B4A SINE B4 -2 290 2 7 1037 24 32 0 0 chr1 59335703 59335734 -137859698 + AT_rich Low_complexity Low_complexity 1 31 0 7 1037 299 136 17 0 chr1 59335786 59335845 -137859587 + (CATA)n Simple_repeat Simple_repeat 4 63 0 7 1037 571 257 50 39 chr1 59335866 59336149 -137859283 - B4A SINE B4 -5 287 2 7 1037 468 243 0 18 chr1 59336346 59336455 -137858977 - PB1D7 SINE Alu -1 119 13 7 1037 261 252 63 106 chr1 59336365 59336507 -137858925 - MT2B2 LTR ERVL -329 255 120 7 1037 201 147 0 0 chr1 59337308 59337342 -137858090 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 7 1037 232 274 165 10 chr1 59338386 59338400 -137857032 - B2_Mm2 SINE B2 -67 128 115 7 1037 551 312 7 0 chr1 59338400 59338544 -137856888 + B1F SINE Alu 1 145 -4 7 1037 336 239 125 0 chr1 59338544 59338632 -137856800 - B3 SINE B2 -108 108 10 7 1037 291 157 756 55 chr1 59339077 59339204 -137856228 + B3 SINE B2 1 216 0 7 1037 535 263 22 29 chr1 59339314 59339451 -137855981 - RSINE1 SINE B4 0 165 30 7 1037 198 0 0 0 chr1 59340379 59340401 -137855031 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1037 888 166 14 0 chr1 59340421 59340560 -137854872 - B1_Mur4 SINE Alu -9 141 1 7 1037 216 0 0 0 chr1 59341270 59341294 -137854138 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1037 444 19 0 0 chr1 59341448 59341501 -137853931 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1037 813 246 39 35 chr1 59341871 59342103 -137853329 + B4A SINE B4 1 233 -59 7 1037 248 187 52 26 chr1 59342097 59342174 -137853258 + B4 SINE B4 9 87 -205 7 1037 306 0 0 0 chr1 59342508 59342542 -137852890 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1037 1048 127 0 0 chr1 59342548 59342713 -137852719 - ORR1C2 LTR MaLR -219 165 1 7 1037 920 249 17 52 chr1 59342713 59342946 -137852486 - B4A SINE B4 -67 225 1 7 1037 309 242 50 59 chr1 59343074 59343087 -137852345 - PB1D10 SINE Alu 0 117 105 7 1037 252 0 0 0 chr1 59343087 59343115 -137852317 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1037 309 242 50 59 chr1 59343115 59343202 -137852230 - PB1D10 SINE Alu -13 104 18 7 1037 386 297 7 79 chr1 59343764 59343903 -137851529 - RSINE1 SINE B4 -29 136 8 7 1037 876 173 207 6 chr1 59343938 59344112 -137851320 - B3 SINE B2 -6 210 2 7 1037 248 0 0 30 chr1 59344476 59344509 -137850923 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1037 737 229 0 14 chr1 59345371 59345517 -137849915 - B1F1 SINE Alu -5 144 1 7 1037 225 0 0 0 chr1 59345563 59345588 -137849844 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1037 274 208 0 0 chr1 59345596 59345649 -137849783 - ID4 SINE ID -29 54 2 7 1037 549 200 60 9 chr1 59346885 59347001 -137848431 - RSINE1 SINE B4 -43 122 1 7 1037 557 200 12 41 chr1 59347261 59347433 -137847999 - Lx9 LINE L1 -14 7630 7464 7 1037 230 206 0 14 chr1 59347437 59347511 -137847921 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 7 1037 3665 233 38 30 chr1 59347512 59348489 -137846943 - Lx9 LINE L1 -127 7517 6533 7 1037 243 0 0 0 chr1 59348808 59348835 -137846597 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1037 198 143 0 0 chr1 59349325 59349360 -137846072 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1037 453 286 45 8 chr1 59349375 59349509 -137845923 - RSINE1 SINE B4 -21 144 6 7 1037 441 0 0 0 chr1 59349535 59349584 -137845848 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1037 378 0 0 0 chr1 59349584 59349625 -137845807 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1037 192 97 0 0 chr1 59349787 59349818 -137845614 + (CCCCCA)n Simple_repeat Simple_repeat 1 31 0 7 1037 227 291 56 64 chr1 59349836 59349961 -137845471 - L1M5 LINE L1 -564 5676 5553 7 1037 441 260 88 14 chr1 59350128 59350276 -137845156 - RSINE1 SINE B4 -4 161 3 7 1037 483 33 0 0 chr1 59350711 59350772 -137844660 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1037 1126 225 5 0 chr1 59350896 59351109 -137844323 + B3 SINE B2 3 216 0 7 1037 780 193 14 0 chr1 59351167 59351307 -137844125 - B1_Mur3 SINE Alu -2 147 6 7 1037 383 213 33 100 chr1 59351200 59351320 -137844112 - MT2B LTR ERVL -337 264 153 7 1037 1364 93 22 0 chr1 59351505 59351688 -137843744 - B2_Mm2 SINE B2 -8 187 1 7 1037 278 310 87 79 chr1 59351707 59351833 -137843599 + ID_B1 SINE B4 3 129 -95 7 1037 369 136 91 0 chr1 59351916 59351982 -137843450 - B3A SINE B2 -121 77 6 7 1037 1645 289 45 67 chr1 59352050 59352201 -137843231 + L1MC4 LINE L1 6773 6902 -1140 7 1037 4416 144 50 5 chr1 59352201 59352939 -137842493 - Lx5 LINE L1 -3 7047 6277 7 1037 1645 289 45 67 chr1 59352939 59353595 -137841837 + L1MC4 LINE L1 6903 7562 -480 7 1037 247 203 0 63 chr1 59353641 59353704 -137841728 - ID4 SINE ID 0 83 25 7 1037 227 233 42 53 chr1 59353744 59353839 -137841593 + L1MC4 LINE L1 7579 7672 -370 7 1037 389 274 20 88 chr1 59353870 59354018 -137841414 + RSINE1 SINE B4 6 143 -22 7 1037 186 43 0 0 chr1 59354604 59354627 -137840805 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 7 1037 768 270 121 14 chr1 59354648 59354930 -137840502 - L1MB4 LINE L1 -21 6159 5848 7 1037 209 189 0 0 chr1 59354959 59354996 -137840436 + G-rich Low_complexity Low_complexity 4 40 0 7 1037 669 222 76 0 chr1 59354997 59355141 -137840291 - B3A SINE B2 -43 155 1 7 1037 206 95 0 23 chr1 59355918 59355961 -137839471 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1037 567 118 19 29 chr1 59356032 59356137 -137839295 - B1_Mur4 SINE Alu -6 144 41 7 1037 269 203 0 63 chr1 59356187 59356250 -137839182 - B1_Mus2 SINE Alu -88 59 1 7 1037 24 32 0 0 chr1 59356462 59356493 -137838939 + AT_rich Low_complexity Low_complexity 1 31 0 7 1037 209 174 43 14 chr1 59356566 59356636 -137838796 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 7 1037 297 244 38 25 chr1 59356926 59357006 -137838426 + ID4 SINE ID 3 83 0 7 1037 1025 260 126 9 chr1 59357145 59357494 -137837938 + Kanga1b DNA Tc2 275 664 -115 7 1037 327 25 0 0 chr1 59357518 59357558 -137837874 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1037 362 367 0 6 chr1 59358581 59358740 -137836692 + (TG)n Simple_repeat Simple_repeat 2 159 0 7 1037 205 268 0 18 chr1 59358754 59358811 -137836621 + (CTTTG)n Simple_repeat Simple_repeat 2 57 0 7 1037 351 0 0 0 chr1 59358844 59358883 -137836549 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1037 4053 124 106 67 chr1 59359072 59359928 -137835504 + RMER19B LTR ERVK 1 890 -12 7 1037 257 299 22 7 chr1 59359962 59360100 -137835332 + (TA)n Simple_repeat Simple_repeat 2 141 0 7 1037 243 0 0 0 chr1 59360100 59360127 -137835305 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1037 669 202 47 0 chr1 59360249 59360378 -137835054 + RSINE1 SINE B4 3 137 -28 7 1037 878 262 29 11 chr1 59360502 59360776 -137834656 - L1MB4 LINE L1 -72 6108 5830 7 1037 250 283 45 68 chr1 59361108 59361252 -137834180 + MIRb SINE MIR 63 212 -56 7 1037 455 281 18 42 chr1 59361278 59361445 -137833987 + RSINE1 SINE B4 3 165 0 7 1037 556 246 8 0 chr1 59361485 59361607 -137833825 + B1F2 SINE Alu 22 144 -5 7 1037 329 76 61 0 chr1 59361625 59361691 -137833741 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 1037 1209 97 2 0 chr1 59361692 59362210 -137833222 + (CA)n Simple_repeat Simple_repeat 1 519 0 7 1037 267 128 0 0 chr1 59362703 59362750 -137832682 - B1_Mm SINE Alu 0 147 101 7 1037 1155 62 14 0 chr1 59362802 59362946 -137832486 + B1_Mus2 SINE Alu 1 146 -1 7 1037 23 33 0 0 chr1 59362950 59362980 -137832452 + AT_rich Low_complexity Low_complexity 1 30 0 7 1037 429 70 0 0 chr1 59363533 59363590 -137831842 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1037 599 259 21 7 chr1 59363595 59363739 -137831693 - B3A SINE B2 -51 147 2 7 1037 1200 68 0 0 chr1 59363819 59363965 -137831467 - B1_Mus1 SINE Alu 0 148 3 7 1037 363 260 125 0 chr1 59364264 59364368 -137831064 - RSINE1 SINE B4 -38 127 11 7 1037 26 30 0 0 chr1 59364640 59364673 -137830759 + AT_rich Low_complexity Low_complexity 1 33 0 7 1037 341 225 0 11 chr1 59364675 59364765 -137830667 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1037 418 268 0 0 chr1 59364802 59364899 -137830533 - RSINE1 SINE B4 -21 144 48 7 1037 361 233 0 11 chr1 59364967 59365054 -137830378 - L1MA8 LINE L1 -51 6240 6155 7 1037 248 276 218 7 chr1 59365104 59365246 -137830186 - L1M3 LINE L1 -594 5709 5538 7 1037 263 198 200 95 chr1 59365295 59365390 -137830042 - PB1D10 SINE Alu -12 105 1 7 1037 468 228 125 69 chr1 59365390 59365480 -137829952 - ID_B1 SINE B4 -124 100 2 7 1037 752 228 50 28 chr1 59365512 59365828 -137829604 - L1M3 LINE L1 -730 5443 5105 7 1037 574 276 19 31 chr1 59366894 59367055 -137828377 + RSINE1 SINE B4 1 159 -6 7 1037 573 246 80 0 chr1 59367867 59368005 -137827427 - B1F2 SINE Alu 0 149 1 7 1037 296 252 3 6 chr1 59368808 59368883 -137826549 + B1F1 SINE Alu 3 76 -41 7 1037 590 0 0 14 chr1 59368883 59368954 -137826478 + (GA)n Simple_repeat Simple_repeat 2 71 0 7 1037 1045 313 48 48 chr1 59370224 59370765 -137824667 - L1MA4 LINE L1 -266 6034 5494 8 1037 270 136 0 0 chr1 59370767 59370811 -137824621 + (CACCAT)n Simple_repeat Simple_repeat 1 44 0 8 1037 555 213 98 8 chr1 59370831 59370954 -137824478 - B1F1 SINE Alu -15 134 1 8 1037 207 0 0 0 chr1 59371048 59371071 -137824361 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1037 252 0 0 0 chr1 59371086 59371114 -137824318 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1037 215 61 30 0 chr1 59371486 59371519 -137823913 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 8 1037 684 0 0 0 chr1 59372695 59372771 -137822661 + (TA)n Simple_repeat Simple_repeat 2 77 0 8 1037 225 0 0 0 chr1 59373609 59373634 -137821798 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1037 354 98 0 0 chr1 59373967 59374018 -137821414 + (GGGAGA)n Simple_repeat Simple_repeat 3 53 0 8 1037 593 150 0 29 chr1 59374087 59374224 -137821208 + (TA)n Simple_repeat Simple_repeat 1 133 0 8 1037 21 0 0 0 chr1 59374632 59374653 -137820779 + AT_rich Low_complexity Low_complexity 1 21 0 8 129 243 363 62 0 chr1 59375588 59375701 -137819731 - MIRb SINE MIR -113 155 36 8 1038 673 217 28 0 chr1 59376304 59376447 -137818985 - B1F1 SINE Alu 0 149 3 8 1038 21 0 0 0 chr1 59376447 59376468 -137818964 + AT_rich Low_complexity Low_complexity 1 21 0 8 1038 242 29 0 28 chr1 59377184 59377220 -137818212 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1038 266 211 38 11 chr1 59379535 59379622 -137815810 + MER5A DNA MER1_type 57 157 -32 8 1038 1237 190 0 14 chr1 59379924 59380143 -137815289 + B3 SINE B2 1 216 0 8 1038 499 311 60 7 chr1 59380156 59380305 -137815127 + RSINE1 SINE B4 3 159 -6 8 1038 612 196 0 0 chr1 59380405 59380517 -137814915 + ORR1D1 LTR MaLR 4 115 -259 8 1038 180 0 0 0 chr1 59380862 59380882 -137814550 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 8 1038 751 121 111 22 chr1 59380882 59381017 -137814415 - B1_Mus1 SINE Alu 0 148 2 8 1038 319 90 351 9 chr1 59381622 59381733 -137813699 - B2_Mm2 SINE B2 0 195 47 8 1038 1136 101 12 0 chr1 59381768 59381937 -137813495 - B2_Mm1t SINE B2 -22 171 1 8 1038 284 258 52 0 chr1 59382002 59382099 -137813333 - PB1D10 SINE Alu -45 104 3 8 1038 280 222 18 24 chr1 59382122 59382204 -137813228 - PB1D7 SINE Alu -19 98 13 8 1038 235 279 25 0 chr1 59382246 59382325 -137813107 - B4 SINE B4 -200 92 12 8 1038 674 207 65 48 chr1 59382433 59382643 -137812789 - B3A SINE B2 -1 194 7 8 1038 213 121 0 0 chr1 59382690 59382723 -137812709 + (TTG)n Simple_repeat Simple_repeat 3 35 0 8 1038 243 0 0 0 chr1 59382811 59382838 -137812594 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1038 185 314 200 0 chr1 59382843 59382948 -137812484 + L2b LINE L2 3240 3365 -10 8 1038 432 309 159 82 chr1 59382974 59383327 -137812105 - MLT1B LTR MaLR -7 383 4 8 1038 623 294 29 19 chr1 59385316 59385521 -137809911 - MER3 DNA MER1_type -2 207 1 8 1038 830 148 0 40 chr1 59385662 59385810 -137809622 - B1_Mus1 SINE Alu 0 148 7 8 1038 190 277 31 0 chr1 59385863 59385928 -137809504 - MIRm SINE MIR -133 143 77 8 1038 720 320 26 26 chr1 59386734 59386968 -137808464 - MLT1A0 LTR MaLR -78 287 54 8 1038 189 270 0 0 chr1 59387842 59387931 -137807501 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1038 315 0 0 0 chr1 59389710 59389745 -137805687 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1038 408 143 0 0 chr1 59390154 59390224 -137805208 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1038 23 0 0 0 chr1 59391612 59391635 -137803797 + AT_rich Low_complexity Low_complexity 1 23 0 8 1038 501 17 0 0 chr1 59391712 59391770 -137803662 + (TC)n Simple_repeat Simple_repeat 2 59 0 8 1038 456 19 0 0 chr1 59392189 59392242 -137803190 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1038 511 274 80 48 chr1 59392260 59392448 -137802984 - B4 SINE B4 -29 263 70 8 1038 798 145 50 7 chr1 59392482 59392621 -137802811 - B1_Mm SINE Alu -1 146 2 8 1038 351 0 0 0 chr1 59392656 59392695 -137802737 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 8 1038 222 160 0 0 chr1 59392743 59392793 -137802639 + CT-rich Low_complexity Low_complexity 1 50 0 8 1038 279 254 0 31 chr1 59392795 59392860 -137802572 - ID4 SINE ID -16 67 5 8 1038 226 344 38 76 chr1 59393028 59393160 -137802272 - L2c LINE L2 -18 3369 3243 8 1038 651 271 74 97 chr1 59393217 59393312 -137802120 + B4A SINE B4 2 97 -195 8 1038 621 199 105 15 chr1 59393312 59393445 -137801987 + B1_Mus2 SINE Alu 2 146 -1 8 1038 651 271 74 97 chr1 59393445 59393647 -137801785 + B4A SINE B4 98 292 0 8 1038 442 250 192 0 chr1 59393749 59393905 -137801527 - ID_B1 SINE B4 -12 212 27 8 1038 342 0 0 0 chr1 59394118 59394156 -137801276 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8 1038 23 33 0 0 chr1 59394285 59394315 -137801117 + AT_rich Low_complexity Low_complexity 1 30 0 8 1038 588 234 26 23 chr1 59394367 59394543 -137800889 - B3 SINE B2 -3 213 15 8 1038 387 0 0 0 chr1 59394645 59394688 -137800744 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1038 780 273 12 143 chr1 59394688 59394940 -137800492 - B4 SINE B4 -73 219 1 8 1038 283 202 282 12 chr1 59395007 59395092 -137800340 + RSINE1 SINE B4 3 110 -55 8 1038 1115 90 0 7 chr1 59395153 59395299 -137800133 + B1_Mus1 SINE Alu 3 147 -1 8 1038 1298 82 48 27 chr1 59395865 59396052 -137799380 - B2_Mm1t SINE B2 -1 192 2 8 1038 534 203 19 101 chr1 59396280 59396439 -137798993 + B1_Mur4 SINE Alu 1 146 -4 8 1038 333 0 0 0 chr1 59396480 59396517 -137798915 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1038 214 279 16 16 chr1 59396726 59396788 -137798644 + PB1 SINE Alu 64 125 -2 8 1038 556 88 0 32 chr1 59396788 59396882 -137798550 + (GGAGA)n Simple_repeat Simple_repeat 5 95 0 8 1038 687 216 7 36 chr1 59396889 59397028 -137798404 + B1_Mur1 SINE Alu 15 149 0 8 1038 909 113 17 17 chr1 59398463 59398643 -137796789 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1038 250 250 0 32 chr1 59398645 59398707 -137796725 + C-rich Low_complexity Low_complexity 4 63 0 8 1038 297 293 33 49 chr1 59399300 59399422 -137796010 - MIRb SINE MIR -14 254 135 8 1038 255 322 0 22 chr1 59399554 59399643 -137795789 + MER47B DNA MER2_type 1 87 -331 8 1038 284 328 84 84 chr1 59399645 59399835 -137795597 + MER2 DNA MER2_type 2 191 -154 8 1038 284 310 101 58 chr1 59399879 59400086 -137795346 + MER47B DNA MER2_type 95 313 -105 8 1038 789 223 155 16 chr1 59400086 59400273 -137795159 - B3 SINE B2 -2 214 2 8 1038 284 310 101 58 chr1 59400273 59400292 -137795140 + MER47B DNA MER2_type 314 332 -86 8 1038 822 209 72 38 chr1 59400292 59400501 -137794931 + B3 SINE B2 1 216 0 8 1038 284 310 101 58 chr1 59400501 59400530 -137794902 + MER47B DNA MER2_type 333 360 -58 8 1038 262 235 20 0 chr1 59400567 59400618 -137794814 + MER47B DNA MER2_type 367 418 0 8 1038 23 0 0 0 chr1 59400663 59400686 -137794746 + AT_rich Low_complexity Low_complexity 1 23 0 8 1038 277 358 36 9 chr1 59401552 59401662 -137793770 - MER81 DNA AcHobo -1 113 1 8 1038 2669 82 136 42 chr1 59401990 59402424 -137793008 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1038 27039 11 2 0 chr1 59402424 59405375 -137790057 - IAPEz-int LTR ERVK 0 6481 3525 8 1038 963 72 24 0 chr1 59405375 59405500 -137789932 - IAPEz-int LTR ERVK -2770 4910 4783 8 1038 1849 102 0 0 chr1 59405495 59405741 -137789691 - IAPEz-int LTR ERVK -5183 2497 2252 8 1038 972 67 0 0 chr1 59405742 59405861 -137789571 - IAPEz-int LTR ERVK -5004 1477 1359 8 1038 4429 81 21 29 chr1 59405861 59406591 -137788841 - IAPEz-int LTR ERVK -5819 662 3 8 1038 2641 87 139 35 chr1 59406593 59407023 -137788409 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1038 274 227 97 0 chr1 59407497 59407569 -137787863 - BC1_Mm scRNA scRNA -70 82 4 8 1038 759 236 18 80 chr1 59407658 59407884 -137787548 - B3 SINE B2 -3 213 2 8 1038 482 232 11 0 chr1 59408578 59408673 -137786759 - PB1D9 SINE Alu -18 102 7 8 1038 250 324 58 10 chr1 59408582 59408685 -137786747 - B4 SINE B4 -105 187 80 8 1038 837 246 25 5 chr1 59408730 59408934 -137786498 + B3 SINE B2 3 210 -6 8 1038 1245 61 0 23 chr1 59409301 59409567 -137785865 + (GAAA)n Simple_repeat Simple_repeat 1 259 0 8 1038 197 324 40 0 chr1 59410618 59410692 -137784740 - MIRc SINE MIR -110 158 82 8 1038 501 206 0 0 chr1 59411719 59411826 -137783606 + CT-rich Low_complexity Low_complexity 3 109 0 8 1038 707 116 160 15 chr1 59411852 59411983 -137783449 + B1_Mur4 SINE Alu 1 150 0 8 1038 189 0 0 0 chr1 59412344 59412365 -137783067 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 8 1038 654 278 17 56 chr1 59412589 59412768 -137782664 + B3A SINE B2 2 173 -25 8 1038 369 0 0 0 chr1 59412778 59412819 -137782613 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1038 260 250 73 24 chr1 59412849 59412931 -137782501 + MLT1I LTR MaLR 319 404 -7 8 1038 263 202 139 52 chr1 59413020 59413035 -137782397 - Charlie5 DNA MER1_type -2485 139 122 8 1038 270 180 197 0 chr1 59413035 59413096 -137782336 - ID4_ SINE ID -9 74 2 8 1038 358 219 160 40 chr1 59413096 59413244 -137782188 - MER3 DNA MER1_type -39 170 1 8 1038 389 233 0 0 chr1 59413926 59414010 -137781422 - ID4 SINE ID -61 91 8 8 1038 276 127 0 0 chr1 59414133 59414188 -137781244 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 8 1038 916 117 51 0 chr1 59414195 59414332 -137781100 - B1_Mus1 SINE Alu -4 144 1 8 1038 490 180 47 57 chr1 59414345 59414451 -137780981 - PB1D7 SINE Alu -8 112 8 8 1038 258 296 24 47 chr1 59415106 59415187 -137780245 + MLT1A1 LTR MaLR 12 90 -284 8 1038 705 259 13 33 chr1 59415187 59415382 -137780050 + B3A SINE B2 1 177 -18 8 1038 398 246 8 71 chr1 59415583 59415710 -137779722 + MLT1A1 LTR MaLR 288 406 -2 8 1038 718 234 0 42 chr1 59415736 59415879 -137779553 + B3 SINE B2 80 216 0 8 1038 710 276 74 26 chr1 59416598 59416829 -137778603 - Lx8 LINE L1 -4 7469 7228 8 1038 788 105 8 39 chr1 59416918 59417047 -137778385 + B2_Mm2 SINE B2 1 125 -70 8 1038 575 202 92 15 chr1 59417164 59417295 -137778137 + B1_Mur1 SINE Alu 9 149 0 8 1038 858 162 149 11 chr1 59417381 59417556 -137777876 + B3 SINE B2 15 213 -3 8 1038 597 221 18 0 chr1 59417663 59417776 -137777656 - PB1D7 SINE Alu -1 119 5 9 1038 280 227 198 56 chr1 59417664 59417790 -137777642 - B4A SINE B4 -68 224 81 9 1038 190 139 41 122 chr1 59417834 59417883 -137777549 + L2a LINE L2 3362 3406 -20 9 1038 297 0 0 0 chr1 59419271 59419304 -137776128 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1038 510 17 0 0 chr1 59419304 59419362 -137776070 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1038 188 122 0 24 chr1 59419473 59419515 -137775917 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 9 1038 25 0 0 0 chr1 59419779 59419804 -137775628 + AT_rich Low_complexity Low_complexity 1 25 0 9 1038 213 280 0 0 chr1 59419845 59419895 -137775537 + L2c LINE L2 3256 3305 -82 9 1038 211 267 92 13 chr1 59420146 59420222 -137775210 + PB1D10 SINE Alu 28 109 -8 9 1038 723 200 104 16 chr1 59420275 59420468 -137774964 - B3 SINE B2 -6 210 1 9 1038 320 157 0 0 chr1 59420492 59420543 -137774889 - ID_B1 SINE B4 -1 223 173 9 1038 255 209 72 29 chr1 59420543 59420561 -137774871 - PB1D9 SINE Alu 0 120 49 9 1038 295 259 37 0 chr1 59420558 59420639 -137774793 - ID SINE ID -136 88 5 9 1038 323 161 16 16 chr1 59420643 59420706 -137774726 - ID_B1 SINE B4 0 224 162 9 1038 207 0 0 0 chr1 59421069 59421092 -137774340 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1038 1078 270 90 12 chr1 59422537 59422860 -137772572 + MARNA DNA Mariner 196 543 -43 9 1038 299 246 159 0 chr1 59423018 59423087 -137772345 + ID4_ SINE ID 2 81 -2 9 1038 824 256 29 30 chr1 59423428 59423653 -137771779 - ID_B1 SINE B4 -3 221 1 9 1038 269 333 0 0 chr1 59423911 59423995 -137771437 + MLT1D LTR MaLR 23 106 -399 9 1038 746 191 8 0 chr1 59424010 59424136 -137771296 + B3 SINE B2 6 132 -84 9 1038 699 278 17 6 chr1 59424292 59424466 -137770966 - B3A SINE B2 -22 176 1 9 1038 266 307 40 81 chr1 59424802 59424926 -137770506 - LTR16A1 LTR ERVL -311 145 27 9 1038 186 253 16 123 chr1 59425118 59425234 -137770198 - MIRb SINE MIR -137 131 14 9 1038 380 315 27 0 chr1 59426514 59426625 -137768807 + PB1D10 SINE Alu 4 117 0 9 1038 242 183 0 32 chr1 59426625 59426687 -137768745 + A-rich Low_complexity Low_complexity 4 63 0 9 1038 30 59 0 0 chr1 59426743 59426794 -137768638 + AT_rich Low_complexity Low_complexity 1 51 0 9 1038 21 0 0 0 chr1 59426900 59426921 -137768511 + AT_rich Low_complexity Low_complexity 1 21 0 9 1038 1167 257 72 48 chr1 59427043 59427251 -137768181 - L1MB8 LINE L1 -171 6007 5780 9 1038 295 245 101 28 chr1 59427251 59427360 -137768072 - PB1D10 SINE Alu 0 117 1 9 1038 1167 257 72 48 chr1 59427360 59427612 -137767820 - L1MB8 LINE L1 -399 5779 5536 9 1038 277 323 40 16 chr1 59428023 59428149 -137767283 + MER117 DNA MER1_type 69 197 0 9 1038 209 284 53 64 chr1 59428164 59428258 -137767174 - MIR SINE MIR -136 126 34 9 1038 21 57 0 0 chr1 59428815 59428850 -137766582 + AT_rich Low_complexity Low_complexity 1 35 0 9 1038 525 194 49 0 chr1 59428922 59429066 -137766366 + (CA)n Simple_repeat Simple_repeat 2 152 0 9 1038 311 121 0 17 chr1 59429091 59429150 -137766282 + (CATA)n Simple_repeat Simple_repeat 1 58 0 9 1038 221 329 0 0 chr1 59429628 59429701 -137765731 + (TG)n Simple_repeat Simple_repeat 1 73 0 9 1038 844 171 14 0 chr1 59430166 59430312 -137765120 + B1_Mur4 SINE Alu 1 148 -2 9 1038 769 253 29 49 chr1 59430384 59430588 -137764844 - ID_B1 SINE B4 -1 223 24 9 1038 902 293 80 42 chr1 59430597 59431124 -137764308 - L1MB8 LINE L1 -62 6116 5570 9 1038 1687 198 101 12 chr1 59431128 59431473 -137763959 - MTC LTR MaLR -13 408 6 9 1038 300 53 0 0 chr1 59431474 59431512 -137763920 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1038 771 168 22 82 chr1 59431860 59432042 -137763390 + ORR1D1 LTR MaLR 11 181 -193 9 1038 341 146 90 55 chr1 59432025 59432170 -137763262 + RMER17A LTR ERVK 341 490 -261 9 1038 411 234 144 8 chr1 59432083 59432208 -137763224 + ORR1D1 LTR MaLR 167 308 -66 9 1038 384 40 0 0 chr1 59432208 59432258 -137763174 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1038 1252 91 17 6 chr1 59432271 59432447 -137762985 + B2_Mm2 SINE B2 3 180 -15 9 1038 1210 68 0 0 chr1 59432447 59432595 -137762837 + B1_Mus1 SINE Alu 1 148 0 9 1038 47 0 0 0 chr1 59432595 59432642 -137762790 + AT_rich Low_complexity Low_complexity 1 47 0 9 1038 371 147 0 83 chr1 59432663 59432745 -137762687 + ORR1D1 LTR MaLR 299 374 0 9 1038 1026 146 35 6 chr1 59433827 59433999 -137761433 + B2_Mm2 SINE B2 1 177 -18 9 1038 182 118 29 0 chr1 59434757 59434791 -137760641 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 9 1038 435 271 15 54 chr1 59434960 59435163 -137760269 + L1MC5 LINE L1 7556 7750 -211 9 1038 213 39 0 0 chr1 59435270 59435296 -137760136 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1038 784 196 0 14 chr1 59435296 59435425 -137760007 - B1_Mus2 SINE Alu -10 137 9 9 1038 276 30 0 0 chr1 59436687 59436720 -137758712 + (TTA)n Simple_repeat Simple_repeat 1 33 0 9 1038 524 180 0 0 chr1 59436777 59436866 -137758566 + B1_Mur1 SINE Alu 41 129 -20 9 1038 297 75 0 0 chr1 59436866 59436906 -137758526 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1038 355 303 67 73 chr1 59436934 59437098 -137758334 + RSINE1 SINE B4 2 164 -1 9 1038 1100 82 0 0 chr1 59437149 59437283 -137758149 + B1_Mm SINE Alu 2 135 -12 9 1038 323 277 37 65 chr1 59437306 59437317 -137758115 + MT2B LTR ERVL 154 161 -440 9 1038 512 262 79 0 chr1 59437317 59437443 -137757989 + B1F1 SINE Alu 1 136 -13 9 1038 316 235 73 0 chr1 59437469 59437537 -137757895 + MIRc SINE MIR 12 84 -184 9 1038 805 150 56 14 chr1 59438647 59438779 -137756653 + B1_Mur4 SINE Alu 1 140 -10 9 1038 690 47 0 0 chr1 59438779 59438865 -137756567 + (CAAGC)n Simple_repeat Simple_repeat 5 90 0 9 1038 399 300 42 112 chr1 59439143 59439402 -137756030 + MIR SINE MIR 20 260 -2 9 1038 321 186 26 103 chr1 59440726 59440804 -137754628 - ID4 SINE ID -2 81 10 9 1038 35 0 0 40 chr1 59440989 59441010 -137754422 + AT_rich Low_complexity Low_complexity 1 20 0 9 1038 1165 69 14 0 chr1 59441010 59441155 -137754277 + B1_Mus1 SINE Alu 2 148 0 9 1038 35 0 0 40 chr1 59441155 59441183 -137754249 + AT_rich Low_complexity Low_complexity 1 28 0 9 1038 219 420 9 35 chr1 59441480 59441596 -137753836 + RSINE1 SINE B4 43 155 -10 9 1038 635 94 0 10 chr1 59441608 59441705 -137753727 + (TA)n Simple_repeat Simple_repeat 1 96 0 9 1038 341 221 143 9 chr1 59441853 59441958 -137753474 + PB1D7 SINE Alu 2 120 0 9 1038 264 77 0 0 chr1 59442516 59442555 -137752877 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1038 312 206 12 110 chr1 59442557 59442639 -137752793 - PB1D10 SINE Alu -11 106 33 9 1038 398 266 31 39 chr1 59442642 59442771 -137752661 - RSINE1 SINE B4 -35 130 3 9 1038 378 214 0 0 chr1 59443094 59443183 -137752249 + (TA)n Simple_repeat Simple_repeat 1 89 0 9 1038 292 307 81 46 chr1 59443326 59443500 -137751932 + MIR SINE MIR 71 250 -12 9 1038 462 79 0 0 chr1 59443837 59443900 -137751532 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1038 289 301 108 54 chr1 59444053 59444239 -137751193 + MamRep434 DNA TcMar 224 419 -7 9 1038 321 258 71 10 chr1 59445219 59445317 -137750115 + MLT1D LTR MaLR 2 105 -400 9 1038 719 246 41 46 chr1 59445317 59445513 -137749919 - MTEb LTR MaLR -15 364 170 9 1038 362 280 32 0 chr1 59445460 59445553 -137749879 - PB1D10 SINE Alu -21 96 1 9 1038 1401 201 191 22 chr1 59445923 59446280 -137749152 - MTD LTR MaLR -1 418 2 9 1038 260 273 12 49 chr1 59446598 59446679 -137748753 - ID4_ SINE ID -1 82 5 9 1038 415 303 106 64 chr1 59446791 59446932 -137748500 + RSINE1 SINE B4 17 163 -2 9 1038 276 196 6 94 chr1 59447758 59447938 -137747494 + G-rich Low_complexity Low_complexity 6 169 0 9 1038 1189 75 0 0 chr1 59448126 59448273 -137747159 + B1_Mus2 SINE Alu 1 147 0 9 1038 214 182 0 0 chr1 59448275 59448319 -137747113 + A-rich Low_complexity Low_complexity 1 44 0 9 1038 422 295 39 68 chr1 59448831 59449038 -137746394 - B4A SINE B4 -6 286 86 9 1038 37 0 0 0 chr1 59449038 59449075 -137746357 + AT_rich Low_complexity Low_complexity 1 37 0 9 1038 405 195 13 13 chr1 59449075 59449153 -137746279 - B4A SINE B4 -214 78 1 9 1038 780 159 50 21 chr1 59449185 59449318 -137746114 + B1_Mus2 SINE Alu 1 137 -10 9 1038 231 36 0 0 chr1 59449318 59449346 -137746086 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1038 2137 94 18 35 chr1 59449765 59450144 -137745288 - RLTR10A LTR ERVK 0 359 1 9 1038 194 282 27 27 chr1 59450212 59450285 -137745147 + MIRc SINE MIR 161 233 -35 9 1038 485 151 0 0 chr1 59450409 59450482 -137744950 + B2_Mm2 SINE B2 23 95 -100 9 1038 327 266 24 80 chr1 59451122 59451287 -137744145 - MIRc SINE MIR -74 194 43 9 1038 243 114 0 0 chr1 59452654 59452698 -137742734 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 9 1038 216 0 0 0 chr1 59452703 59452727 -137742705 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1038 226 209 0 23 chr1 59452727 59452771 -137742661 - RSINE1 SINE B4 -24 141 99 9 1038 180 0 0 0 chr1 59453174 59453194 -137742238 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1038 447 263 57 41 chr1 59453194 59453317 -137742115 - ID_B1 SINE B4 -10 214 90 9 1038 593 280 40 0 chr1 59453370 59453520 -137741912 - RSINE1 SINE B4 -8 157 2 9 1038 720 250 12 0 chr1 59455727 59455887 -137739545 + RSINE1 SINE B4 4 165 0 1 1038 1017 103 153 6 chr1 59456097 59456254 -137739178 + B2_Mm2 SINE B2 2 181 -14 1 1038 210 71 0 0 chr1 59456528 59456556 -137738876 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1 1038 535 62 25 0 chr1 59456849 59456929 -137738503 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1038 761 250 52 10 chr1 59456929 59457123 -137738309 - B4A SINE B4 -22 270 69 1 1038 492 214 136 0 chr1 59458941 59459044 -137736388 + RSINE1 SINE B4 3 119 -46 1 1038 291 245 0 0 chr1 59459261 59459355 -137736077 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1038 530 234 6 0 chr1 59459381 59459556 -137735876 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1038 356 222 0 0 chr1 59459557 59459629 -137735803 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1038 395 302 105 20 chr1 59459630 59459782 -137735650 - RSINE1 SINE B4 0 165 1 1 1038 225 152 0 0 chr1 59460008 59460041 -137735391 + MER91B DNA Tip100 135 167 -23 1 1038 1126 52 0 29 chr1 59460468 59460607 -137734825 + B1_Mus2 SINE Alu 2 136 -11 1 1038 673 70 0 20 chr1 59460607 59460709 -137734723 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 1 1038 241 274 76 42 chr1 59460927 59461045 -137734387 - L2a LINE L2 -44 3382 3261 1 1038 3159 44 26 0 chr1 59461555 59461944 -137733488 + MTB LTR MaLR 2 400 0 1 1038 456 291 82 0 chr1 59462094 59462204 -137733228 - RSINE1 SINE B4 -44 121 3 1 1038 268 64 43 0 chr1 59462710 59462757 -137732675 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1038 229 204 41 27 chr1 59462780 59463003 -137732429 + (TG)n Simple_repeat Simple_repeat 1 226 0 1 1038 585 162 19 26 chr1 59463040 59463315 -137732117 + (TG)n Simple_repeat Simple_repeat 1 272 0 1 1038 672 157 15 26 chr1 59463327 59463598 -137731834 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 1038 521 223 35 26 chr1 59464197 59464312 -137731120 - PB1D7 SINE Alu -4 116 1 1 1038 588 239 10 2 chr1 59464322 59464733 -137730699 + (CA)n Simple_repeat Simple_repeat 1 414 0 1 1038 371 235 12 12 chr1 59464736 59464904 -137730528 + (CATATA)n Simple_repeat Simple_repeat 5 172 0 1 1038 529 200 23 11 chr1 59464923 59465100 -137730332 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1038 362 134 15 0 chr1 59465103 59465170 -137730262 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1038 264 148 0 0 chr1 59465405 59465466 -137729966 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1038 755 50 30 4 chr1 59465468 59465576 -137729856 - B1_Mm SINE Alu 0 147 1 1 1038 207 0 0 0 chr1 59465579 59465602 -137729830 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1038 414 0 0 0 chr1 59465919 59465965 -137729467 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1038 485 255 88 38 chr1 59466103 59466262 -137729170 - MIR SINE MIR -55 207 41 1 1038 813 146 0 0 chr1 59466291 59466428 -137729004 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 1 1038 1295 229 94 16 chr1 59466855 59467447 -137727985 + L1MA6 LINE L1 4943 5591 -706 1 1038 1805 170 71 82 chr1 59467455 59467833 -137727599 + MTD LTR MaLR 46 419 0 1 1038 1086 306 67 37 chr1 59467835 59467854 -137727578 + L1MA6 LINE L1 5579 5604 -696 1 1038 1019 147 164 26 chr1 59467854 59468049 -137727383 + URR1A DNA MER1_type 1 222 -4 1 1038 1086 306 67 37 chr1 59468049 59468563 -137726869 + L1MA6 LINE L1 5605 6131 -169 1 1038 678 210 193 0 chr1 59468563 59468744 -137726688 + B3 SINE B2 1 216 0 1 1038 1086 306 67 37 chr1 59468744 59468909 -137726523 + L1MA6 LINE L1 6132 6299 -1 1 1038 242 276 17 176 chr1 59468910 59469029 -137726403 + MT2B2 LTR ERVL 153 252 -332 1 1038 523 250 8 75 chr1 59468923 59469057 -137726375 + B1F1 SINE Alu 4 128 -21 1 1038 297 283 137 19 chr1 59469803 59469959 -137725473 + MIRb SINE MIR 13 194 -74 1 1038 254 298 74 22 chr1 59470334 59470489 -137724943 + MIR3 SINE MIR 30 187 -21 1 1038 741 302 87 41 chr1 59470718 59471056 -137724376 + MER47B DNA MER2_type 13 366 0 1 1038 258 105 0 0 chr1 59471067 59471105 -137724327 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1 1038 397 229 42 125 chr1 59472204 59472324 -137723108 + MT2B LTR ERVL 155 264 -337 1 1038 795 182 45 0 chr1 59472222 59472354 -137723078 + B1_Mur3 SINE Alu 7 144 -5 1 1038 184 333 0 75 chr1 59472676 59472770 -137722662 + L3 LINE CR1 3489 3575 -914 1 1038 819 293 179 18 chr1 59473583 59473868 -137721564 + Tigger7 DNA MER2_type 10 340 -2151 1 1038 496 310 81 11 chr1 59474133 59474404 -137721028 - L1ME3 LINE L1 -3 6159 5870 1 1038 220 196 59 0 chr1 59474672 59474723 -137720709 + C-rich Low_complexity Low_complexity 1 54 0 1 1038 207 0 0 0 chr1 59475226 59475249 -137720183 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1038 203 105 53 0 chr1 59475594 59475632 -137719800 + C-rich Low_complexity Low_complexity 2 41 0 1 1038 595 244 50 121 chr1 59476073 59476371 -137719061 - RMER17C LTR ERVK -54 356 80 1 1038 457 233 158 47 chr1 59476376 59476547 -137718885 - MTD LTR MaLR -226 193 4 1 1038 345 131 0 0 chr1 59476547 59476608 -137718824 + (CCCCCT)n Simple_repeat Simple_repeat 2 62 0 1 1038 408 203 0 13 chr1 59476621 59476696 -137718736 - PB1D10 SINE Alu -3 114 41 1 1038 254 50 0 24 chr1 59477135 59477176 -137718256 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1038 1449 176 37 112 chr1 59477246 59477649 -137717783 - Lx5 LINE L1 -2 7048 6676 1 1038 254 303 83 32 chr1 59478349 59478448 -137716984 + RMER17C LTR ERVK 85 187 -223 1 1038 1140 124 0 0 chr1 59478448 59478626 -137716806 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 1038 254 303 83 32 chr1 59478626 59478778 -137716654 + RMER17C LTR ERVK 188 349 -61 1 1038 315 0 0 0 chr1 59479029 59479064 -137716368 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1038 295 328 37 15 chr1 59479516 59479652 -137715780 - MIRc SINE MIR -1 267 129 1 1038 195 222 0 0 chr1 59479657 59479702 -137715730 + GA-rich Low_complexity Low_complexity 3 47 0 1 1038 226 280 91 71 chr1 59479788 59479942 -137715490 - MIRm SINE MIR -52 224 68 1 1038 542 219 42 35 chr1 59481072 59481214 -137714218 + B2_Mm2 SINE B2 50 192 -3 1 1038 1001 258 146 38 chr1 59481280 59481622 -137713810 + MTE2b LTR MaLR 1 379 0 1 1038 250 236 118 53 chr1 59482243 59482319 -137713113 - ID4 SINE ID -1 82 2 1 1038 194 394 37 46 chr1 59482363 59482472 -137712960 - L2b LINE L2 -3 3372 3265 1 1038 259 292 57 102 chr1 59482698 59482942 -137712490 + ORR1D1 LTR MaLR 27 259 -115 1 1038 708 49 92 0 chr1 59482953 59483117 -137712315 + (TCC)n Simple_repeat Simple_repeat 1 179 0 1 1038 305 246 14 0 chr1 59483124 59483193 -137712239 - HAL1-3A_ME LINE L1 -505 2353 2284 1 1038 714 269 74 14 chr1 59483334 59483549 -137711883 - MER58B DNA MER1_type -48 293 66 1 1038 207 0 0 0 chr1 59483752 59483775 -137711657 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1038 616 199 95 69 chr1 59484542 59484731 -137710701 - B3A SINE B2 -4 194 1 1 1038 221 277 107 12 chr1 59484883 59484967 -137710465 + MIRc SINE MIR 48 139 -69 1 1038 482 327 67 21 chr1 59485127 59485384 -137710048 - L2a LINE L2 -282 3144 2869 1 1038 1091 199 308 21 chr1 59486113 59486447 -137708985 - RLTR23 LTR ERV1 0 430 1 1 1038 464 322 0 81 chr1 59486630 59486890 -137708542 - RNERVK23-int LTR ERVK -547 7670 7432 1 1038 254 355 0 0 chr1 59488069 59488162 -137707270 - RLTR19-int LTR ERVK -1665 4472 4380 1 1038 456 128 209 0 chr1 59488464 59488550 -137706882 - RLTR23 LTR ERV1 -326 104 1 1 1038 58 84 0 0 chr1 59488581 59488723 -137706709 + AT_rich Low_complexity Low_complexity 1 142 0 1 1038 1014 212 323 43 chr1 59488834 59489184 -137706248 + RLTR20A2 LTR ERVK 1 446 -105 1 1038 378 0 0 0 chr1 59489184 59489226 -137706206 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1038 545 215 101 57 chr1 59489226 59489324 -137706108 + RLTR20A2 LTR ERVK 447 550 -1 1 1038 343 289 0 13 chr1 59489364 59489441 -137705991 + ID4_ SINE ID 2 77 -6 1 1038 234 275 14 42 chr1 59489524 59489596 -137705836 - ID4 SINE ID -13 70 1 1 1038 283 188 0 37 chr1 59490307 59490368 -137705064 + ID4_ SINE ID 30 88 -64 1 1038 279 0 0 0 chr1 59491453 59491484 -137703948 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1038 550 329 92 61 chr1 59492780 59493126 -137702306 + MTEa LTR MaLR 10 366 -13 1 1038 1277 27 0 20 chr1 59494115 59494265 -137701167 + B1_Mus1 SINE Alu 2 148 0 1 1038 188 351 18 0 chr1 59494319 59494376 -137701056 + MIR SINE MIR 112 169 -93 1 1038 198 0 0 0 chr1 59494633 59494655 -137700777 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1038 22 0 0 0 chr1 59495693 59495715 -137699717 + AT_rich Low_complexity Low_complexity 1 22 0 1 1038 369 0 0 0 chr1 59495886 59495927 -137699505 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1038 181 245 38 0 chr1 59496008 59496061 -137699371 + MIRc SINE MIR 77 131 -137 1 1038 758 260 10 35 chr1 59497075 59497278 -137698154 - B3A SINE B2 0 198 1 1 1038 21 36 0 0 chr1 59497813 59497841 -137697591 + AT_rich Low_complexity Low_complexity 1 28 0 1 1038 518 309 49 21 chr1 59497861 59498003 -137697429 - RSINE1 SINE B4 -15 150 5 1 1038 1267 180 10 0 chr1 59498028 59498234 -137697198 - B3 SINE B2 -4 212 5 1 1038 230 0 33 0 chr1 59498319 59498349 -137697083 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 1 1038 262 102 552 25 chr1 59498349 59498436 -137696996 - B2_Mm2 SINE B2 -16 179 47 1 1038 351 0 0 0 chr1 59498487 59498526 -137696906 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1038 793 86 19 0 chr1 59498526 59498635 -137696797 - B2_Mm1t SINE B2 -33 160 48 1 1038 1324 92 49 0 chr1 59498836 59499021 -137696411 - B2_Mm2 SINE B2 0 195 2 1 1038 2226 126 75 80 chr1 59499535 59500000 -137695432 - RLTR45 LTR ERVK 0 482 20 1 1038 263 216 116 83 chr1 59500020 59500121 -137695311 + B1F2 SINE Alu 25 136 -13 1 1038 249 33 0 0 chr1 59500121 59500151 -137695281 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1038 263 216 116 83 chr1 59500151 59500170 -137695262 + B1F2 SINE Alu 137 149 0 1 1038 269 293 90 10 chr1 59501471 59501571 -137693861 + MLT1A0 LTR MaLR 2 109 -256 3 1038 405 315 0 0 chr1 59501734 59501826 -137693606 - B4 SINE B4 -4 288 197 4 1038 1555 157 81 35 chr1 59501835 59502259 -137693173 - RMER17C LTR ERVK -519 439 19 5 1038 519 267 33 7 chr1 59502255 59502406 -137693026 - B4A SINE B4 -137 155 1 4 1038 333 218 0 0 chr1 59502412 59502490 -137692942 + CT-rich Low_complexity Low_complexity 3 80 0 6 1038 253 286 0 18 chr1 59502490 59502547 -137692885 - ID4_ SINE ID -25 58 3 7 1038 287 236 55 36 chr1 59503390 59503500 -137691932 + L1M5 LINE L1 5467 5578 -616 8 1038 304 352 27 41 chr1 59503564 59503783 -137691649 + L1ME5 LINE L1 5725 5940 -254 9 1038 526 149 117 50 chr1 59503935 59504055 -137691377 - B1F2 SINE Alu -15 134 7 1 1038 417 222 63 193 chr1 59504055 59504158 -137691274 - ID_B1 SINE B4 -15 209 16 1 1038 623 277 39 78 chr1 59504174 59504242 -137691190 - ID_B1 SINE B4 -1 223 156 1 1038 1694 167 51 43 chr1 59504242 59504637 -137690795 - RMER10B LTR ERVL 0 398 1 1 1038 623 277 39 78 chr1 59504637 59504799 -137690633 - ID_B1 SINE B4 -69 155 2 1 1038 432 279 81 8 chr1 59504828 59504951 -137690481 + L2a LINE L2 3291 3422 -4 1 1038 290 26 26 0 chr1 59505610 59505649 -137689783 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1039 333 321 15 15 chr1 59509207 59509340 -137686092 + CT-rich Low_complexity Low_complexity 3 135 0 1 1039 1175 199 0 5 chr1 59509498 59509710 -137685722 + B3 SINE B2 1 211 -5 1 1039 1017 219 5 28 chr1 59509728 59509944 -137685488 + B3 SINE B2 1 211 -5 1 1039 437 158 0 13 chr1 59510162 59510239 -137685193 + B1_Mur3 SINE Alu 73 148 -1 1 1039 1451 56 17 0 chr1 59510298 59510478 -137684954 + B2_Mm2 SINE B2 5 187 -8 2 1039 1194 48 0 27 chr1 59511416 59511429 -137684003 - B1_Mus1 SINE Alu 0 148 139 2 1039 255 31 0 0 chr1 59511429 59511461 -137683971 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1039 1194 48 0 27 chr1 59511461 59511596 -137683836 - B1_Mus1 SINE Alu -10 138 4 2 1039 205 29 29 29 chr1 59511657 59511692 -137683740 + (GGAGA)n Simple_repeat Simple_repeat 2 36 0 2 1039 313 304 65 0 chr1 59511822 59511848 -137683584 + L1MEg LINE L1 1848 1877 -4207 2 1039 1154 70 0 0 chr1 59511848 59511991 -137683441 + B1_Mm SINE Alu 1 143 -4 2 1039 313 304 65 0 chr1 59511991 59512056 -137683376 + L1MEg LINE L1 1878 1944 -4140 2 1039 291 54 0 0 chr1 59514812 59514849 -137680583 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1039 732 189 0 0 chr1 59515127 59515280 -137680152 + CT-rich Low_complexity Low_complexity 1 153 0 2 1039 180 283 0 48 chr1 59515818 59515881 -137679551 - L2c LINE L2 -43 3344 3285 2 1039 385 244 42 42 chr1 59516824 59516944 -137678488 + PB1D7 SINE Alu 1 120 0 2 1039 530 290 6 116 chr1 59516957 59517121 -137678311 + RSINE1 SINE B4 2 147 -18 3 1039 246 128 0 0 chr1 59517121 59517160 -137678272 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1039 342 115 0 0 chr1 59517170 59517222 -137678210 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 3 1039 373 228 95 38 chr1 59517322 59517427 -137678005 + MER58B DNA MER1_type 223 333 -8 3 1039 434 287 88 13 chr1 59517433 59517592 -137677840 - MER58B DNA MER1_type -125 216 46 3 1039 337 253 87 87 chr1 59517511 59517597 -137677835 + RLTR25B LTR ERVK 315 406 -622 3 1039 1044 199 75 0 chr1 59517597 59517798 -137677634 + B3 SINE B2 1 216 0 3 1039 337 253 87 87 chr1 59517798 59517906 -137677526 + RLTR25B LTR ERVK 407 509 -519 3 1039 864 45 0 18 chr1 59517839 59517951 -137677481 + B1_Mus1 SINE Alu 39 148 0 3 1039 245 327 0 0 chr1 59517964 59518016 -137677416 - MER58B DNA MER1_type -287 54 3 3 1039 325 264 72 45 chr1 59518098 59518209 -137677223 - PB1D10 SINE Alu -3 114 1 3 1039 863 164 7 0 chr1 59518463 59518609 -137676823 + B1_Mus1 SINE Alu 1 147 -1 3 1039 513 253 57 18 chr1 59519252 59519408 -137676024 + ID_B1 SINE B4 80 248 -44 4 1039 495 0 0 0 chr1 59519466 59519521 -137675911 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1039 663 316 12 27 chr1 59519690 59520028 -137675404 + HAL1b LINE L1 1172 1504 -505 4 1039 360 167 0 0 chr1 59520086 59520158 -137675274 + T-rich Low_complexity Low_complexity 1 72 0 4 1039 249 298 102 24 chr1 59520159 59520174 -137675258 - ID_B1 SINE B4 0 224 88 4 1039 334 279 45 9 chr1 59520174 59520286 -137675146 - B1F2 SINE Alu -27 122 7 4 1039 487 257 70 76 chr1 59520348 59520533 -137674899 - B3A SINE B2 0 198 15 4 1039 312 281 84 12 chr1 59520733 59520816 -137674616 - RSINE1 SINE B4 -63 102 14 4 1039 338 348 125 9 chr1 59520967 59521199 -137674233 - MIR SINE MIR 0 262 4 4 1039 442 262 94 8 chr1 59521296 59521423 -137674009 + RSINE1 SINE B4 8 145 -20 4 1039 312 48 0 0 chr1 59521425 59521467 -137673965 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1039 411 21 0 0 chr1 59521467 59521514 -137673918 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1039 535 254 187 11 chr1 59522857 59523044 -137672388 - ID_B1 SINE B4 -2 222 3 5 1039 288 0 0 0 chr1 59523700 59523732 -137671700 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1039 315 0 0 0 chr1 59523732 59523766 -137671666 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1039 412 323 195 9 chr1 59524100 59524331 -137671101 + L3 LINE CR1 4125 4398 -91 5 1039 247 315 60 77 chr1 59524376 59524493 -137670939 + MIRb SINE MIR 18 132 -136 5 1039 459 0 0 0 chr1 59524493 59524544 -137670888 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1039 207 0 0 0 chr1 59524544 59524566 -137670866 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1039 414 0 0 0 chr1 59524566 59524611 -137670821 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 5 1039 922 235 35 10 chr1 59524739 59524937 -137670495 + B3 SINE B2 9 211 -5 6 1039 987 233 24 10 chr1 59524962 59525170 -137670262 + B3 SINE B2 1 211 -5 6 1039 241 132 12 116 chr1 59525213 59525299 -137670133 + RLTR25B LTR ERVK 432 508 -520 6 1039 374 221 13 13 chr1 59525226 59525304 -137670128 + B1_Mur4 SINE Alu 43 120 -30 6 1039 255 31 0 0 chr1 59525310 59525342 -137670090 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1039 462 224 166 36 chr1 59525347 59525486 -137669946 + RSINE1 SINE B4 9 165 0 6 1039 683 237 22 0 chr1 59525607 59525742 -137669690 + B3 SINE B2 1 138 -78 6 1039 288 0 0 0 chr1 59525742 59525774 -137669658 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 6 1039 198 0 0 0 chr1 59525821 59525843 -137669589 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1039 260 254 73 15 chr1 59525966 59526034 -137669398 - MER31A LTR ERV1 -61 424 353 6 1039 342 300 77 21 chr1 59526995 59527138 -137668294 - MIRc SINE MIR -73 195 45 7 1039 281 324 146 16 chr1 59527554 59527739 -137667693 + MIR SINE MIR 46 254 -8 7 1039 266 107 0 18 chr1 59528360 59528417 -137667015 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 7 1039 200 359 137 0 chr1 59528422 59528553 -137666879 + MIR3 SINE MIR 30 178 -30 7 1039 1125 76 28 61 chr1 59528608 59528789 -137666643 - B2_Mm2 SINE B2 -1 194 20 7 1039 423 0 0 0 chr1 59528816 59528863 -137666569 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1039 483 336 73 0 chr1 59528864 59529001 -137666431 - RSINE1 SINE B4 -17 148 2 7 1039 185 0 40 0 chr1 59529755 59529780 -137665652 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 7 1039 270 0 0 0 chr1 59529944 59529974 -137665458 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1039 213 94 0 0 chr1 59529974 59530006 -137665426 + (C)n Simple_repeat Simple_repeat 1 32 0 7 1039 216 200 0 0 chr1 59530666 59530706 -137664726 + MER5B DNA MER1_type 12 51 -127 8 1039 471 251 156 6 chr1 59531636 59531816 -137663616 - ID_B1 SINE B4 -16 208 2 8 1039 192 97 0 0 chr1 59532054 59532085 -137663347 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 8 1039 557 255 126 11 chr1 59532085 59532275 -137663157 - B3 SINE B2 0 216 5 8 1039 382 96 27 0 chr1 59532781 59532854 -137662578 + (TC)n Simple_repeat Simple_repeat 1 75 0 8 1039 213 372 32 16 chr1 59533000 59533123 -137662309 - MER5B DNA MER1_type -1 177 53 8 1039 255 167 74 0 chr1 59533123 59533177 -137662255 + CT-rich Low_complexity Low_complexity 1 58 0 8 1039 225 0 0 0 chr1 59533575 59533600 -137661832 + (CAA)n Simple_repeat Simple_repeat 2 26 0 8 1039 235 241 69 0 chr1 59533697 59533755 -137661677 + MIRb SINE MIR 165 226 -42 8 1039 399 327 101 0 chr1 59533852 59534011 -137661421 + MER63B DNA AcHobo 261 435 -1 8 1039 22 35 0 0 chr1 59534011 59534040 -137661392 + AT_rich Low_complexity Low_complexity 1 29 0 9 1039 243 167 30 15 chr1 59534067 59534134 -137661298 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 9 1039 201 349 88 50 chr1 59534261 59534421 -137661011 - MIRm SINE MIR -100 176 11 9 1039 242 333 105 53 chr1 59534909 59535080 -137660352 + MLT1F2 LTR MaLR 177 356 -204 9 1039 439 189 7 45 chr1 59535082 59535181 -137660251 + PB1D9 SINE Alu 35 128 -21 9 1039 463 277 85 36 chr1 59535220 59535385 -137660047 + MLT1F2 LTR MaLR 386 558 -2 9 1039 528 216 23 108 chr1 59536332 59536462 -137658970 - PB1D9 SINE Alu 0 120 2 9 1039 305 207 10 130 chr1 59536375 59536475 -137658957 - MT2B LTR ERVL -362 239 152 9 1039 245 242 48 16 chr1 59536545 59536608 -137658824 - ID4 SINE ID -17 66 2 9 1039 216 0 0 0 chr1 59538196 59538220 -137657212 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1039 26 30 0 0 chr1 59539663 59539696 -137655736 + GC_rich Low_complexity Low_complexity 1 33 0 9 1039 183 42 0 0 chr1 59542787 59542811 -137652621 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1039 917 132 0 0 chr1 59542817 59542953 -137652479 - B1_Mur3 SINE Alu -13 136 1 1 1039 1231 115 130 0 chr1 59543995 59544195 -137651237 + URR1A DNA MER1_type 1 226 0 1 1039 575 117 0 11 chr1 59545208 59545303 -137650129 + (TCC)n Simple_repeat Simple_repeat 3 96 0 1 1039 969 174 247 144 chr1 59546139 59546487 -137648945 + MTD LTR MaLR 26 409 -10 1 1039 431 323 108 59 chr1 59546733 59546937 -137648495 - B4A SINE B4 -76 216 3 1 1039 216 0 0 0 chr1 59546950 59546974 -137648458 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1039 412 152 85 21 chr1 59548040 59548134 -137647298 + PB1D7 SINE Alu 20 119 -1 1 1039 214 231 84 84 chr1 59549560 59549631 -137645801 - L2b LINE L2 -16 3359 3289 1 1039 284 260 65 0 chr1 59549706 59549783 -137645649 - MIRb SINE MIR -60 208 127 1 1039 413 214 26 18 chr1 59550049 59550163 -137645269 - PB1D10 SINE Alu 0 117 3 1 1039 238 224 16 65 chr1 59550234 59550296 -137645136 + tRNA-Ala-GCY_ tRNA tRNA 10 68 -7 1 1039 453 19 0 0 chr1 59550368 59550422 -137645010 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1 1039 231 36 0 0 chr1 59550472 59550500 -137644932 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1039 2163 245 72 4 chr1 59550509 59551053 -137644379 + Lx9 LINE L1 6376 6956 -688 1 1039 201 188 43 14 chr1 59551054 59551070 -137644362 + (TA)n Simple_repeat Simple_repeat 1 16 0 1 1039 319 198 11 11 chr1 59551070 59551157 -137644275 + Lx9 LINE L1 7543 7629 -15 1 1039 201 188 43 14 chr1 59551157 59551210 -137644222 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1039 39 60 0 0 chr1 59551223 59551290 -137644142 + AT_rich Low_complexity Low_complexity 1 67 0 1 1039 362 69 0 17 chr1 59551300 59551359 -137644073 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1039 393 22 0 0 chr1 59552170 59552216 -137643216 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1039 492 211 6 16 chr1 59552216 59552318 -137643114 + B1F2 SINE Alu 19 149 0 1 1039 241 229 0 0 chr1 59552384 59552432 -137643000 + CT-rich Low_complexity Low_complexity 2 49 0 1 1039 908 238 25 0 chr1 59552454 59552656 -137642776 - ID_B1 SINE B4 -16 208 2 1 1039 1108 68 0 0 chr1 59553665 59553798 -137641634 + B1_Mm SINE Alu 3 135 -12 1 1039 789 90 0 0 chr1 59553798 59553909 -137641523 + (GAA)n Simple_repeat Simple_repeat 2 112 0 1 1039 686 258 51 6 chr1 59554270 59554287 -137641145 - RSINE1 SINE B4 0 165 149 1 1039 225 108 0 0 chr1 59554287 59554324 -137641108 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1039 686 258 51 6 chr1 59554324 59554462 -137640970 - RSINE1 SINE B4 -17 148 3 1 1039 189 195 0 0 chr1 59554897 59554938 -137640494 + GA-rich Low_complexity Low_complexity 1 41 0 1 1039 499 211 0 6 chr1 59555523 59555626 -137639806 + PB1D9 SINE Alu 18 114 -35 1 1039 985 51 22 7 chr1 59555632 59555771 -137639661 + (GGGAA)n Simple_repeat Simple_repeat 2 142 0 1 1039 549 225 54 0 chr1 59555878 59556007 -137639425 + B1F1 SINE Alu 5 140 -9 1 1039 255 286 0 0 chr1 59556026 59556082 -137639350 + ID4_ SINE ID 6 61 -22 1 1039 207 303 56 75 chr1 59557434 59557541 -137637891 + L2 LINE L2 2695 2799 -620 1 1039 299 344 117 0 chr1 59557934 59558062 -137637370 + MLT1C LTR MaLR 1 143 -324 1 1039 1341 195 7 40 chr1 59558062 59558300 -137637132 + MYSERV-int LTR ERVK 6209 6447 -103 1 1039 1420 71 16 16 chr1 59558300 59558486 -137636946 - B2_Mm2 SINE B2 -9 186 1 1 1039 1341 195 7 40 chr1 59558486 59558551 -137636881 + MYSERV-int LTR ERVK 6448 6502 -48 1 1039 1723 132 29 7 chr1 59558569 59558844 -137636588 + RLTR11A LTR ERVK 248 528 0 1 1039 398 123 31 0 chr1 59559177 59559242 -137636190 + RLTR11A LTR ERVK 462 528 0 1 1039 992 128 7 0 chr1 59559784 59559932 -137635500 + B1_Mur4 SINE Alu 2 150 0 1 1039 187 128 62 21 chr1 59559950 59559998 -137635434 + GA-rich Low_complexity Low_complexity 2 51 0 1 1039 866 176 46 46 chr1 59560207 59560404 -137635028 + B3A SINE B2 1 197 -1 1 1039 557 194 177 0 chr1 59561318 59561442 -137633990 + B1_Mur1 SINE Alu 3 148 -1 1 1039 205 205 0 0 chr1 59561443 59561482 -137633950 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1039 351 0 0 0 chr1 59561482 59561521 -137633911 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1039 261 0 0 0 chr1 59561745 59561774 -137633658 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1039 1200 56 7 0 chr1 59561792 59561936 -137633496 - B1_Mus2 SINE Alu -1 146 2 1 1039 596 180 7 26 chr1 59562023 59562177 -137633255 + CT-rich Low_complexity Low_complexity 4 154 0 1 1039 369 0 0 0 chr1 59562677 59562718 -137632714 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1039 258 69 0 0 chr1 59563768 59563808 -137631624 - ID_B1 SINE B4 -143 149 106 1 1039 249 156 22 0 chr1 59563773 59563818 -137631614 - PB1D7 SINE Alu -61 59 14 1 1039 1467 143 0 0 chr1 59563818 59564035 -137631397 + URR1A DNA MER1_type 6 222 -4 1 1039 1159 62 7 7 chr1 59564346 59564493 -137630939 + B1_Mm SINE Alu 1 147 0 1 1039 279 254 229 33 chr1 59564704 59564826 -137630606 - RSINE1 SINE B4 -17 148 3 1 1039 29 0 0 0 chr1 59564831 59564860 -137630572 + AT_rich Low_complexity Low_complexity 1 29 0 1 1039 350 241 308 12 chr1 59566108 59566280 -137629152 + ID_B1 SINE B4 1 223 -1 1 1039 354 138 0 0 chr1 59566280 59566338 -137629094 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 1 1039 289 294 45 60 chr1 59566442 59566576 -137628856 - MIRb SINE MIR -66 202 71 1 1039 365 273 6 0 chr1 59566995 59567156 -137628276 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 1039 558 290 34 17 chr1 59567158 59567337 -137628095 - B3A SINE B2 -16 182 1 1 1039 444 19 0 0 chr1 59567430 59567483 -137627949 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1039 184 356 146 8 chr1 59567558 59567688 -137627744 + L2b LINE L2 3219 3366 -9 1 1039 224 100 25 0 chr1 59567690 59567730 -137627702 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1 1039 731 289 9 62 chr1 59567919 59568129 -137627303 + ID_B1 SINE B4 25 223 -1 1 1039 878 226 64 35 chr1 59568160 59568362 -137627070 - B3 SINE B2 0 216 9 1 1039 253 247 25 49 chr1 59568292 59568373 -137627059 - B4A SINE B4 -213 79 1 1 1039 1488 256 51 51 chr1 59568650 59569103 -137626329 - LTR16B2 LTR ERVL 0 462 10 1 1039 339 25 0 0 chr1 59569272 59569312 -137626120 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 1 1039 480 183 118 0 chr1 59569315 59569408 -137626024 - PB1D10 SINE Alu -13 104 1 1 1039 441 0 0 0 chr1 59569578 59569627 -137625805 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1039 234 0 0 0 chr1 59569630 59569656 -137625776 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1039 274 262 16 0 chr1 59569660 59569721 -137625711 - RSINE1 SINE B4 -13 152 91 1 1039 295 330 38 0 chr1 59569834 59569940 -137625492 - PB1D7 SINE Alu -3 117 8 1 1039 340 295 10 10 chr1 59569854 59569950 -137625482 - ID_B1 SINE B4 -49 175 80 1 1039 232 331 73 16 chr1 59569978 59570101 -137625331 + Kanga11a DNA Tc2 28 157 -813 1 1039 478 318 95 56 chr1 59570140 59570477 -137624955 + Kanga11a DNA Tc2 286 615 -355 1 1039 650 197 15 45 chr1 59570647 59570780 -137624652 + B1_Mur3 SINE Alu 2 130 -19 1 1039 29 28 0 0 chr1 59570968 59571004 -137624428 + AT_rich Low_complexity Low_complexity 1 36 0 1 1039 1421 66 11 0 chr1 59571377 59571558 -137623874 + B2_Mm2 SINE B2 2 184 -11 1 1039 240 184 0 0 chr1 59571558 59571607 -137623825 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 1 1039 225 299 0 0 chr1 59572107 59572174 -137623258 - MIRb SINE MIR -68 200 134 1 1039 1215 130 32 5 chr1 59574551 59574736 -137620696 - B2_Mm2 SINE B2 -5 190 1 1 1039 240 59 0 0 chr1 59574852 59574886 -137620546 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1039 1524 44 0 27 chr1 59574886 59575072 -137620360 - B2_Mm1t SINE B2 -12 181 1 1 1039 1658 26 5 0 chr1 59575073 59575264 -137620168 - B2_Mm1a SINE B2 0 193 2 1 1039 276 30 0 0 chr1 59575264 59575297 -137620135 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1039 557 71 129 0 chr1 59575297 59575382 -137620050 - B1_Mur4 SINE Alu -12 138 43 1 1039 545 193 32 40 chr1 59575377 59575501 -137619931 + B1_Mur4 SINE Alu 22 144 -6 1 1039 219 303 31 82 chr1 59576361 59576458 -137618974 - L2c LINE L2 -14 3373 3282 1 1039 308 296 12 0 chr1 59578126 59578207 -137617225 + ID_B1 SINE B4 142 223 -1 1 1039 622 282 43 67 chr1 59578942 59579101 -137616331 - L1MB3 LINE L1 -295 5888 5730 1 1039 1245 79 38 38 chr1 59579101 59579286 -137616146 - B2_Mm2 SINE B2 -9 186 2 1 1039 622 282 43 67 chr1 59579286 59579407 -137616025 - L1MB3 LINE L1 -454 5729 5616 1 1039 1431 162 87 71 chr1 59579407 59579799 -137615633 + RMER10B LTR ERVL 1 398 0 1 1039 622 282 43 67 chr1 59579799 59579863 -137615569 - L1MB3 LINE L1 -568 5615 5552 1 1039 609 117 11 0 chr1 59579884 59579978 -137615454 - B1_Mus2 SINE Alu -1 146 52 1 1039 414 0 0 0 chr1 59579992 59580038 -137615394 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1039 784 88 304 0 chr1 59580117 59580265 -137615167 - B2_Mm2 SINE B2 0 195 3 1 1039 248 149 0 0 chr1 59580910 59580957 -137614475 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1039 947 179 29 73 chr1 59582526 59582731 -137612701 - B3A SINE B2 -1 197 2 1 1039 345 264 108 31 chr1 59582750 59582879 -137612553 - B1_Mur2 SINE Alu -1 148 10 1 1039 532 293 38 6 chr1 59582959 59583117 -137612315 + RSINE1 SINE B4 2 164 -1 1 1039 1887 147 30 30 chr1 59583187 59583516 -137611916 - ORR1A4 LTR MaLR 0 329 1 1 1039 321 235 0 0 chr1 59585047 59585115 -137610317 - PB1D10 SINE Alu -5 112 45 1 1039 281 206 143 0 chr1 59585133 59585196 -137610236 - MIRc SINE MIR -129 139 68 2 1039 262 317 126 33 chr1 59585382 59585665 -137609767 + LTR33A_ LTR ERVL 146 490 -41 2 1039 484 148 0 47 chr1 59585684 59585769 -137609663 + B1_Mur3 SINE Alu 69 149 0 2 1039 812 157 36 22 chr1 59586557 59586694 -137608738 + B1_Mus2 SINE Alu 3 141 -6 2 1039 378 0 0 0 chr1 59586698 59586740 -137608692 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2 1039 198 118 0 0 chr1 59586741 59586775 -137608657 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 2 1039 236 214 36 0 chr1 59586781 59586837 -137608595 - MLT1A LTR MaLR 0 408 351 2 1039 918 125 0 0 chr1 59586978 59587122 -137608310 + (TCC)n Simple_repeat Simple_repeat 2 145 0 2 1039 301 247 22 33 chr1 59587122 59587214 -137608218 - MLT1A LTR MaLR -221 153 63 2 1039 567 234 9 0 chr1 59587232 59587343 -137608089 - B4A SINE B4 -23 269 158 2 1039 282 106 85 0 chr1 59587331 59587378 -137608054 - B4 SINE B4 -240 52 2 2 1039 277 348 121 21 chr1 59587381 59587566 -137607866 - MIRb SINE MIR -8 254 55 2 1039 185 0 0 39 chr1 59587666 59587692 -137607740 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 1039 300 224 46 9 chr1 59587728 59587836 -137607596 + GA-rich Low_complexity Low_complexity 1 112 0 2 1039 325 305 12 24 chr1 59588073 59588157 -137607275 - RSINE1 SINE B4 0 165 83 2 1039 872 157 0 7 chr1 59588318 59588453 -137606979 - B1_Mur3 SINE Alu -13 136 3 2 1039 337 264 0 52 chr1 59588459 59588555 -137606877 - B4 SINE B4 -200 92 2 2 1039 300 224 9 11 chr1 59588680 59588767 -137606665 - L1MB3 LINE L1 -28 6146 6059 2 1039 260 259 0 0 chr1 59588845 59588903 -137606529 + L2a LINE L2 3363 3420 -6 2 1039 360 179 48 0 chr1 59589097 59589181 -137606251 - L1MA5 LINE L1 -25 6275 6188 2 1039 729 84 12 3 chr1 59589193 59589323 -137606109 - B1_Mus1 SINE Alu -11 138 1 2 1039 454 233 15 98 chr1 59589204 59589337 -137606095 - MT2B LTR ERVL -327 274 153 2 1039 739 223 48 0 chr1 59589338 59589504 -137605928 - B3 SINE B2 -7 209 36 2 1039 354 280 72 36 chr1 59589607 59589718 -137605714 + PB1 SINE Alu 12 126 -1 2 1039 267 273 109 52 chr1 59589799 59589973 -137605459 - L1MA5 LINE L1 -68 6232 6049 2 1039 1223 249 156 49 chr1 59590052 59590605 -137604827 - RLTR18 LTR ERVK -4 612 1 2 1039 477 295 99 42 chr1 59590619 59590902 -137604530 - L1MA5 LINE L1 -531 5772 5474 2 1039 1221 68 0 0 chr1 59590915 59591063 -137604369 + B1_Mus1 SINE Alu 1 148 0 2 1039 268 43 43 0 chr1 59591063 59591109 -137604323 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 2 1039 567 258 146 16 chr1 59591115 59591300 -137604132 - ID_B1 SINE B4 -13 211 3 2 1039 396 0 0 0 chr1 59591334 59591378 -137604054 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1039 517 293 8 0 chr1 59591380 59591513 -137603919 - RSINE1 SINE B4 -30 135 2 2 1039 460 243 169 19 chr1 59591519 59591839 -137603593 - L1MA5 LINE L1 -815 5482 5103 2 1039 324 0 0 0 chr1 59592300 59592336 -137603096 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1039 301 221 24 94 chr1 59593121 59593206 -137602226 + MLT1E2 LTR MaLR 22 100 -527 2 1039 254 259 0 0 chr1 59593250 59593304 -137602128 - BC1_Mm scRNA scRNA -81 71 18 2 1039 907 241 50 61 chr1 59593745 59594006 -137601426 - MLT1D LTR MaLR 0 505 248 2 1039 1666 52 47 0 chr1 59594462 59594675 -137600757 + L1Md_F2 LINE L1 6360 6582 0 2 1039 504 221 0 21 chr1 59594822 59594919 -137600513 + PB1D10 SINE Alu 23 117 0 2 1039 225 269 0 69 chr1 59594988 59595060 -137600372 + ID4 SINE ID 4 70 -13 2 1039 216 359 43 0 chr1 59595251 59595343 -137600089 - MIRc SINE MIR -143 125 30 2 1039 345 200 146 10 chr1 59595895 59595991 -137599441 + MLT1A1 LTR MaLR 45 153 -255 2 1039 637 163 147 0 chr1 59596181 59596310 -137599122 - B1_Mur4 SINE Alu -1 149 2 2 1039 313 194 29 15 chr1 59596311 59596379 -137599053 + MLT1A1 LTR MaLR 340 408 0 2 1039 295 360 32 11 chr1 59596570 59596758 -137598674 + L1ME2 LINE L1 5963 6154 -10 2 1039 853 256 64 0 chr1 59596776 59596979 -137598453 + B3 SINE B2 1 216 0 2 1039 180 97 0 0 chr1 59597117 59597148 -137598284 + (C)n Simple_repeat Simple_repeat 1 31 0 2 1039 986 147 0 0 chr1 59597151 59597294 -137598138 - B1_Mur4 SINE Alu -7 143 1 2 1039 342 0 0 0 chr1 59597938 59597976 -137597456 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1039 1266 35 0 0 chr1 59597979 59598124 -137597308 - B1_Mm SINE Alu -2 145 1 2 1039 186 282 0 0 chr1 59598389 59598428 -137597004 + MIRc SINE MIR 36 74 -194 2 1039 239 0 0 31 chr1 59598900 59598932 -137596500 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1039 428 191 22 0 chr1 59598944 59599033 -137596399 - MER53 DNA hAT -89 104 14 2 1039 311 137 14 0 chr1 59599721 59599794 -137595638 + T-rich Low_complexity Low_complexity 2 75 0 2 1039 750 192 20 27 chr1 59599795 59599945 -137595487 - B1_Mur2 SINE Alu 0 149 1 2 1039 545 139 12 0 chr1 59600030 59600116 -137595316 - URR1B DNA MER1_type -2 223 137 2 1039 1316 91 11 0 chr1 59600116 59600292 -137595140 + B2_Mm1t SINE B2 2 179 -14 2 1039 431 76 22 3 chr1 59600305 59600409 -137595023 + B2_Mm2 SINE B2 47 189 -6 2 1039 508 216 0 19 chr1 59600408 59600512 -137594920 - URR1B DNA MER1_type -118 107 6 2 1039 224 224 0 0 chr1 59601106 59601164 -137594268 + T-rich Low_complexity Low_complexity 1 58 0 2 1039 348 302 131 45 chr1 59601679 59601946 -137593486 - B4A SINE B4 -1 291 2 2 1039 248 150 95 48 chr1 59602009 59602072 -137593360 + RLTR25B LTR ERVK 420 485 -543 2 1039 791 102 0 17 chr1 59602019 59602138 -137593294 + B1_Mur4 SINE Alu 34 150 0 2 1039 675 216 58 0 chr1 59602223 59602362 -137593070 + MER3 DNA MER1_type 48 194 -15 2 1039 386 277 29 10 chr1 59602431 59602533 -137592899 - PB1D10 SINE Alu -4 113 10 2 1039 254 311 34 56 chr1 59602575 59602733 -137592699 + MIRb SINE MIR 25 179 -89 2 1039 397 185 233 8 chr1 59603569 59603689 -137591743 + MIR SINE MIR 111 257 -5 2 1039 1417 65 5 0 chr1 59603906 59604090 -137591342 + L1_Mus1 LINE L1 6374 6558 -9 2 1039 1233 73 0 0 chr1 59604090 59604255 -137591177 + (GGAGAA)n Simple_repeat Simple_repeat 2 166 0 2 1039 252 164 0 102 chr1 59604321 59604388 -137591044 + MIR SINE MIR 99 163 -105 2 1039 360 288 136 75 chr1 59604426 59604586 -137590846 + B4A SINE B4 2 173 -119 2 1039 1956 146 71 26 chr1 59604586 59604938 -137590494 - ORR1B1 LTR MaLR 0 394 27 2 1039 556 214 0 49 chr1 59604983 59605106 -137590326 + B1_Mur3 SINE Alu 33 149 0 2 1039 205 208 0 20 chr1 59605162 59605211 -137590221 + GA-rich Low_complexity Low_complexity 1 48 0 2 1039 260 289 26 13 chr1 59606488 59606565 -137588867 - MIRc SINE MIR -84 184 107 2 1039 459 0 0 0 chr1 59606933 59606984 -137588448 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1039 555 81 0 0 chr1 59607395 59607481 -137587951 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1039 245 327 109 0 chr1 59608372 59608473 -137586959 + MIR SINE MIR 97 208 -54 2 1039 360 0 0 0 chr1 59608535 59608575 -137586857 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1039 279 0 0 0 chr1 59608575 59608605 -137586827 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1039 372 264 152 0 chr1 59608802 59608927 -137586505 + B1F1 SINE Alu 6 149 0 2 1039 759 200 31 84 chr1 59608931 59609122 -137586310 + B3A SINE B2 2 182 -16 2 1039 203 161 0 0 chr1 59609122 59609153 -137586279 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1039 384 221 9 0 chr1 59609424 59609676 -137585756 + (TG)n Simple_repeat Simple_repeat 1 254 0 2 1039 190 266 185 25 chr1 59609676 59609757 -137585675 - L4 LINE RTE -1474 555 462 2 1039 427 344 19 0 chr1 59610022 59610179 -137585253 + RSINE1 SINE B4 6 165 0 2 1039 219 354 55 8 chr1 59610343 59610471 -137584961 + MIRb SINE MIR 71 204 -64 2 1039 705 24 0 0 chr1 59611159 59611242 -137584190 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2 1039 834 76 47 6 chr1 59611450 59611622 -137583810 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1039 415 291 26 5 chr1 59611802 59611923 -137583509 + PB1D10 SINE Alu 4 121 -26 2 1039 267 206 55 0 chr1 59611952 59612117 -137583315 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1039 336 211 110 11 chr1 59612638 59612729 -137582703 - PB1D7 SINE Alu -20 100 1 2 1039 340 211 13 13 chr1 59612654 59612731 -137582701 - ID_B1 SINE B4 -68 156 80 2 1039 246 205 20 153 chr1 59612667 59612765 -137582667 + YREP_Mm Unknown Unknown 255 339 -1473 2 1039 252 184 0 0 chr1 59613489 59613538 -137581894 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1039 22 56 0 0 chr1 59613540 59613576 -137581856 + AT_rich Low_complexity Low_complexity 1 36 0 2 1039 1783 152 166 33 chr1 59613606 59613974 -137581458 - MTC LTR MaLR 0 421 5 2 1039 22 0 0 0 chr1 59614153 59614175 -137581257 + AT_rich Low_complexity Low_complexity 1 22 0 2 1039 1406 95 16 0 chr1 59614362 59614552 -137580880 - B2_Mm2 SINE B2 -1 194 2 2 1039 191 174 0 42 chr1 59614665 59614713 -137580719 + GA-rich Low_complexity Low_complexity 1 46 0 2 1039 455 381 40 6 chr1 59614715 59614892 -137580540 - MLT1K LTR MaLR -352 243 61 2 1039 319 259 106 78 chr1 59615478 59615605 -137579827 + B1_Mur2 SINE Alu 2 138 -11 2 1039 450 0 0 0 chr1 59615605 59615655 -137579777 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1039 319 259 106 78 chr1 59615655 59615669 -137579763 + B1_Mur2 SINE Alu 139 147 -2 2 1039 6502 35 1 0 chr1 59615882 59616643 -137578789 - L1Md_T LINE L1 -2 6580 5819 2 1039 9717 16 0 0 chr1 59616643 59617735 -137577697 + L1Md_T LINE L1 4726 5817 -66 2 1039 189 310 146 16 chr1 59617757 59617912 -137577520 - MIRb SINE MIR -68 200 23 2 1039 312 272 196 36 chr1 59618562 59618730 -137576702 - L1MC4 LINE L1 -128 7914 7720 2 1039 277 333 0 0 chr1 59618790 59618886 -137576546 - L1MC4 LINE L1 -371 7671 7576 2 1039 315 0 0 0 chr1 59618940 59618975 -137576457 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1039 564 271 16 0 chr1 59618988 59619110 -137576322 - ID_B1 SINE B4 -25 199 76 3 1039 565 223 0 35 chr1 59619218 59619334 -137576098 + PB1D9 SINE Alu 2 113 -7 3 1039 1029 183 33 24 chr1 59620276 59620489 -137574943 + B3 SINE B2 1 215 -1 3 1039 582 15 0 0 chr1 59621159 59621226 -137574206 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1039 279 41 61 0 chr1 59622112 59622161 -137573271 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1039 329 291 35 26 chr1 59622194 59622307 -137573125 - RSINE1 SINE B4 -50 115 2 3 1039 710 332 147 7 chr1 59622524 59622952 -137572480 + MER21B LTR ERV1 371 858 -5 3 1039 279 79 0 0 chr1 59624336 59624374 -137571058 + (GGGAGA)n Simple_repeat Simple_repeat 3 40 0 3 1039 220 250 125 0 chr1 59624798 59624862 -137570570 + ID4_ SINE ID 1 72 -11 3 1039 294 95 0 0 chr1 59624884 59624926 -137570506 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1039 899 230 34 19 chr1 59625234 59625442 -137569990 - B3 SINE B2 -1 215 5 3 1039 275 187 52 26 chr1 59625625 59625702 -137569730 - ID4 SINE ID -3 80 2 3 1039 232 277 0 44 chr1 59626757 59626825 -137568607 + MLT1F LTR MaLR 2 66 -503 3 1039 425 270 0 39 chr1 59626874 59626978 -137568454 - MLT1A1 LTR MaLR 0 408 309 3 1039 195 69 0 0 chr1 59626978 59627007 -137568425 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 1039 945 106 28 0 chr1 59627315 59627457 -137567975 - B1_Mus1 SINE Alu -1 147 2 3 1039 237 268 73 0 chr1 59627471 59627553 -137567879 - PB1D9 SINE Alu -2 118 31 3 1039 310 289 67 0 chr1 59627624 59627728 -137567704 + MLT1F LTR MaLR 435 545 -3 3 1039 206 379 22 36 chr1 59627908 59628045 -137567387 + MIR3 SINE MIR 21 155 -53 3 1039 355 361 27 43 chr1 59628655 59628843 -137566589 + LTR33B LTR ERVL 58 242 -261 3 1039 232 200 75 57 chr1 59628853 59628906 -137566526 - ORR1B2 LTR MaLR 0 378 325 3 1039 1001 111 28 0 chr1 59628942 59629086 -137566346 - B1_Mus1 SINE Alu 0 148 1 3 1039 446 123 0 0 chr1 59629086 59629151 -137566281 - ORR1B2 LTR MaLR -40 327 263 3 1039 1405 97 0 0 chr1 59629469 59629654 -137565778 + B2_Mm2 SINE B2 2 186 -9 3 1039 614 202 19 0 chr1 59629807 59629911 -137565521 - PB1D10 SINE Alu 0 117 12 3 1039 247 279 223 9 chr1 59629812 59629924 -137565508 - B4A SINE B4 -72 220 85 3 1039 485 371 142 23 chr1 59630071 59630457 -137564975 + MLT1J LTR MaLR 6 437 -75 3 1039 189 0 0 0 chr1 59631491 59631512 -137563920 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1039 240 300 14 0 chr1 59632089 59632159 -137563273 + CT-rich Low_complexity Low_complexity 2 72 0 3 1039 31 26 0 0 chr1 59634056 59634094 -137561338 + AT_rich Low_complexity Low_complexity 1 38 0 3 1039 1153 124 11 22 chr1 59634106 59634287 -137561145 + B2_Mm1t SINE B2 1 179 -14 3 1039 306 211 9 0 chr1 59634333 59634397 -137561035 + B2_Mm2 SINE B2 47 114 -102 3 1039 22 35 0 0 chr1 59634412 59634441 -137560991 + AT_rich Low_complexity Low_complexity 1 29 0 3 1039 230 295 85 54 chr1 59637539 59637668 -137557764 + MIRc SINE MIR 2 134 -134 3 1040 991 107 70 48 chr1 59637821 59638008 -137557424 + B2_Mm2 SINE B2 3 193 -2 3 1040 781 187 36 0 chr1 59638231 59638370 -137557062 + ID_B1 SINE B4 81 224 0 3 1040 838 192 42 0 chr1 59638383 59638550 -137556882 + B3A SINE B2 1 174 -24 3 1040 360 0 0 0 chr1 59638758 59638798 -137556634 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1040 503 231 85 28 chr1 59639308 59639479 -137555953 + MIR SINE MIR 1 177 -91 3 1040 1326 216 17 34 chr1 59639687 59639984 -137555448 + B4A SINE B4 1 292 0 3 1040 191 146 24 0 chr1 59639988 59640029 -137555403 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1040 303 96 0 0 chr1 59640516 59640568 -137554864 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1040 249 33 0 0 chr1 59641494 59641524 -137553908 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1040 22 0 0 0 chr1 59641848 59641870 -137553562 + AT_rich Low_complexity Low_complexity 1 22 0 3 1040 260 246 35 0 chr1 59642640 59642697 -137552735 + ID4 SINE ID 8 66 -17 3 1040 819 101 0 0 chr1 59642710 59642829 -137552603 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 1040 565 279 63 6 chr1 59642845 59643004 -137552428 + ID_B1 SINE B4 1 168 -56 3 1040 277 281 0 0 chr1 59643192 59643249 -137552183 + polypyrimidine Low_complexity Low_complexity 3 59 0 3 1040 367 184 292 22 chr1 59643261 59643350 -137552082 - PB1D10 SINE Alu -2 115 3 3 1040 484 200 42 34 chr1 59643722 59643841 -137551591 - PB1D9 SINE Alu 0 120 1 3 1040 1559 53 0 0 chr1 59643852 59644039 -137551393 - B2_Mm1a SINE B2 -6 187 1 3 1040 1685 21 0 0 chr1 59644149 59644337 -137551095 - B2_Mm1a SINE B2 -4 189 2 3 1040 1450 84 16 0 chr1 59644439 59644630 -137550802 - B2_Mm2 SINE B2 0 195 2 3 1040 829 207 0 0 chr1 59644833 59644973 -137550459 + B1_Mur3 SINE Alu 1 140 -9 3 1040 531 0 0 0 chr1 59644983 59645042 -137550390 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1040 238 298 78 9 chr1 59645870 59645985 -137549447 - CR1_Mam LINE CR1 -641 1563 1441 3 1040 1277 81 35 0 chr1 59646082 59646255 -137549177 - B2_Mm1t SINE B2 -14 179 1 3 1040 244 300 19 39 chr1 59646540 59646644 -137548788 - L1MC5 LINE L1 -26 7935 7834 3 1040 245 309 30 6 chr1 59646724 59646803 -137548629 - MIR SINE MIR -67 201 117 3 1040 286 297 180 0 chr1 59646910 59647038 -137548394 + MIRb SINE MIR 84 234 -34 3 1040 317 292 42 0 chr1 59647328 59647424 -137548008 - MamRep1161 DNA TcMar -775 182 83 3 1040 199 270 203 0 chr1 59647889 59647963 -137547469 - MIR SINE MIR -77 185 97 3 1040 234 0 0 0 chr1 59647966 59647992 -137547440 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1040 443 265 161 27 chr1 59648137 59648323 -137547109 + ID_B1 SINE B4 2 212 -12 3 1040 540 0 0 0 chr1 59648447 59648507 -137546925 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1040 225 94 0 0 chr1 59650992 59651024 -137544408 + (CAT)n Simple_repeat Simple_repeat 1 32 0 3 1040 216 188 76 30 chr1 59652013 59652079 -137543353 - L2b LINE L2 -57 3318 3250 3 1040 251 292 16 66 chr1 59652393 59652520 -137542912 + L2a LINE L2 3268 3425 -1 3 1040 656 24 0 12 chr1 59653058 59653141 -137542291 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 3 1040 396 59 0 0 chr1 59653146 59653197 -137542235 + (GGGAA)n Simple_repeat Simple_repeat 2 52 0 3 1040 1078 113 6 11 chr1 59653197 59653376 -137542056 + (GAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1040 292 303 177 2 chr1 59653400 59653482 -137541950 + MIRb SINE MIR 36 146 -122 3 1040 180 0 0 0 chr1 59653482 59653502 -137541930 + (G)n Simple_repeat Simple_repeat 1 20 0 3 1040 292 293 172 0 chr1 59653502 59653556 -137541876 + MIRb SINE MIR 147 200 -68 3 1040 239 329 53 27 chr1 59654945 59655020 -137540412 + PB1D7 SINE Alu 15 91 -29 3 1040 552 273 8 0 chr1 59654953 59655074 -137540358 + ID_B1 SINE B4 102 223 -1 3 1040 897 152 14 20 chr1 59655378 59655526 -137539906 - B1_Mus2 SINE Alu 0 147 1 3 1040 357 309 57 91 chr1 59655638 59655733 -137539699 - L2a LINE L2 0 3426 3337 3 1040 409 222 0 12 chr1 59655733 59655815 -137539617 + ID4_ SINE ID 3 83 0 3 1040 357 309 57 91 chr1 59655815 59655929 -137539503 - L2a LINE L2 -90 3336 3224 3 1040 190 330 10 52 chr1 59656616 59656712 -137538720 + MIRc SINE MIR 115 206 -62 3 1040 282 164 0 0 chr1 59657081 59657136 -137538296 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1040 253 244 4 4 chr1 59657152 59657210 -137538222 + PB1D9 SINE Alu 2 59 -90 3 1040 1005 136 0 0 chr1 59657211 59657458 -137537974 + (TG)n Simple_repeat Simple_repeat 1 247 0 3 1040 612 218 24 0 chr1 59657477 59657601 -137537831 - RSINE1 SINE B4 -37 128 2 3 1040 307 250 180 0 chr1 59657630 59657730 -137537702 - PB1D9 SINE Alu -1 119 2 3 1040 317 256 0 79 chr1 59657755 59657844 -137537588 - ID4 SINE ID 0 83 2 3 1040 1337 71 55 0 chr1 59657905 59658087 -137537345 + B2_Mm1a SINE B2 2 193 0 3 1040 284 212 73 29 chr1 59658109 59658177 -137537255 + B3A SINE B2 3 73 -125 3 1040 270 200 0 32 chr1 59658259 59658321 -137537111 + B1_Mur4 SINE Alu 1 60 -90 3 1040 728 101 0 152 chr1 59658326 59658575 -137536857 + (CAGAGA)n Simple_repeat Simple_repeat 1 211 0 3 1040 523 176 0 21 chr1 59658585 59658678 -137536754 + B1_Mur3 SINE Alu 40 130 -19 3 1040 238 36 0 0 chr1 59658680 59658708 -137536724 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1040 498 132 18 28 chr1 59658710 59658819 -137536613 + G-rich Low_complexity Low_complexity 4 111 0 3 1040 623 232 0 48 chr1 59658869 59659014 -137536418 + B3 SINE B2 14 151 -65 3 1040 426 255 59 0 chr1 59659114 59659216 -137536216 - ID_B1 SINE B4 -3 221 114 3 1040 249 214 171 67 chr1 59659128 59659233 -137536199 - PB1D7 SINE Alu -4 116 1 3 1040 216 324 0 51 chr1 59660060 59660138 -137535294 + L2b LINE L2 3297 3370 -5 3 1040 441 0 0 0 chr1 59660492 59660541 -137534891 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1040 419 184 26 13 chr1 59660608 59660685 -137534747 - ID4 SINE ID -3 80 3 3 1040 517 260 56 51 chr1 59660724 59660902 -137534530 + MTEa LTR MaLR 1 179 -200 3 1040 261 308 57 9 chr1 59661011 59661116 -137534316 + MTEa LTR MaLR 251 360 -19 3 1040 363 310 30 10 chr1 59661630 59661731 -137533701 - ID_B1 SINE B4 -38 186 84 3 1040 186 71 0 0 chr1 59661847 59661875 -137533557 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 3 1040 1015 124 7 0 chr1 59661894 59662039 -137533393 - B1_Mus1 SINE Alu -1 147 2 4 1040 186 300 28 14 chr1 59662281 59662352 -137533080 + MIRb SINE MIR 103 174 -94 4 1040 252 0 0 0 chr1 59662488 59662516 -137532916 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1040 204 67 0 0 chr1 59662603 59662633 -137532799 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1040 199 73 23 47 chr1 59662657 59662700 -137532732 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 4 1040 1145 168 28 14 chr1 59662872 59663083 -137532349 - URR1B DNA MER1_type 0 225 12 4 1040 937 225 80 29 chr1 59663225 59663536 -137531896 - RLTR15 LTR ERVK -32 327 1 4 1040 231 246 14 42 chr1 59664277 59664349 -137531083 + ID4 SINE ID 3 72 -11 4 1040 998 142 0 0 chr1 59664352 59664493 -137530939 + B1_Mur4 SINE Alu 3 143 -7 4 1040 728 181 47 0 chr1 59665083 59665210 -137530222 + B1_Mur4 SINE Alu 15 147 -3 4 1040 378 226 17 109 chr1 59665475 59665594 -137529838 - PB1D9 SINE Alu 0 120 13 4 1040 408 20 0 0 chr1 59665624 59665673 -137529759 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 4 1040 1202 80 12 0 chr1 59665681 59665843 -137529589 - B2_Mm2 SINE B2 -31 164 1 4 1040 224 329 59 0 chr1 59665885 59665970 -137529462 + MER91A DNA Tip100 20 109 -87 4 1040 1366 146 9 0 chr1 59666385 59666598 -137528834 - B3 SINE B2 0 216 2 4 1040 192 200 89 0 chr1 59666782 59666827 -137528605 - MIR SINE MIR -185 77 29 4 1040 349 264 14 0 chr1 59667205 59667277 -137528155 + ID4 SINE ID 5 77 -6 4 1040 200 211 0 0 chr1 59667481 59667519 -137527913 - MER5A DNA MER1_type 0 189 152 4 1040 432 0 0 0 chr1 59667525 59667573 -137527859 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1040 667 128 157 33 chr1 59667573 59667677 -137527755 - B1_Mur4 SINE Alu -11 139 18 4 1040 252 0 0 0 chr1 59667677 59667705 -137527727 + (CCCCCA)n Simple_repeat Simple_repeat 6 33 0 4 1040 667 128 157 33 chr1 59667705 59667721 -137527711 - B1_Mur4 SINE Alu -133 17 4 4 1040 374 318 0 27 chr1 59667741 59667851 -137527581 + PB1D10 SINE Alu 10 116 -1 4 1040 869 231 10 44 chr1 59667851 59668055 -137527377 + B3A SINE B2 2 198 0 4 1040 30 0 0 0 chr1 59668057 59668087 -137527345 + AT_rich Low_complexity Low_complexity 1 30 0 4 1040 256 363 48 8 chr1 59668123 59668248 -137527184 - MER5A DNA MER1_type -57 132 3 4 1040 1788 64 8 29 chr1 59668327 59668569 -137526863 + L1_Mus3 LINE L1 6399 6635 -3 4 1040 614 251 58 54 chr1 59668636 59668859 -137526573 + ID_B1 SINE B4 1 224 0 4 1040 570 258 37 116 chr1 59668921 59669136 -137526296 - B3A SINE B2 0 198 1 4 1040 448 261 45 0 chr1 59669298 59669409 -137526023 + MIR SINE MIR 14 129 -133 4 1040 544 256 51 8 chr1 59669517 59669635 -137525797 - ID_B1 SINE B4 -18 206 84 4 1040 1327 192 5 9 chr1 59670147 59670363 -137525069 + B3 SINE B2 1 215 -1 4 1040 407 264 36 0 chr1 59670672 59670782 -137524650 - RSINE1 SINE B4 -6 159 46 4 1040 199 231 42 84 chr1 59671388 59671459 -137523973 + MER5A DNA MER1_type 48 115 -74 4 1040 444 272 0 34 chr1 59671460 59671578 -137523854 + PB1D10 SINE Alu 1 114 -3 4 1040 220 164 35 35 chr1 59671671 59671728 -137523704 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 4 1040 414 57 0 0 chr1 59671736 59671789 -137523643 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1040 186 189 0 0 chr1 59671917 59671954 -137523478 + MIR SINE MIR 94 130 -78 4 1040 30 0 0 0 chr1 59672274 59672304 -137523128 + AT_rich Low_complexity Low_complexity 1 30 0 4 1040 1267 56 0 0 chr1 59672304 59672448 -137522984 - B1_Mus1 SINE Alu -2 146 3 4 1040 224 262 174 70 chr1 59672985 59673100 -137522332 - L2b LINE L2 -201 3186 3060 4 1040 450 0 0 0 chr1 59673365 59673415 -137522017 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1040 402 261 34 0 chr1 59673452 59673540 -137521892 - BC1_Mm scRNA scRNA -61 91 1 4 1040 218 267 0 16 chr1 59674250 59674311 -137521121 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1040 455 252 29 19 chr1 59675051 59675156 -137520276 + PB1D10 SINE Alu 3 108 -9 4 1040 1012 70 154 0 chr1 59675168 59675311 -137520121 + B2_Mm2 SINE B2 2 166 -29 4 1040 1417 104 16 0 chr1 59675320 59675512 -137519920 + B2_Mm2 SINE B2 1 195 0 4 1040 352 291 0 0 chr1 59675685 59675764 -137519668 + ID4_ SINE ID 3 81 -2 4 1040 392 214 0 0 chr1 59675789 59675859 -137519573 - B1_Mur3 SINE Alu -32 117 48 4 1040 216 289 163 22 chr1 59675812 59675904 -137519528 + B1_Mus2 SINE Alu 37 141 -6 4 1040 441 0 0 0 chr1 59675906 59675955 -137519477 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 4 1040 270 355 102 23 chr1 59676497 59676673 -137518759 - ORR1E LTR MaLR -169 190 1 4 1040 543 244 81 0 chr1 59676794 59676917 -137518515 - ID_B1 SINE B4 -1 223 91 4 1040 2595 129 33 5 chr1 59676928 59677324 -137518108 - MTC LTR MaLR -10 411 5 4 1040 198 0 0 0 chr1 59677560 59677582 -137517850 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1040 282 200 0 0 chr1 59677619 59677669 -137517763 + MTC LTR MaLR 6 55 -366 4 1040 824 220 73 55 chr1 59677855 59678176 -137517256 - RLTR11B LTR ERVK -127 326 1 4 1040 2130 139 46 3 chr1 59678176 59678516 -137516916 + MTC LTR MaLR 67 421 0 4 1040 700 253 131 89 chr1 59678614 59679140 -137516292 - L1MC5 LINE L1 -419 7542 6995 4 1040 22 88 0 0 chr1 59679210 59679267 -137516165 + AT_rich Low_complexity Low_complexity 1 57 0 4 1040 182 37 0 36 chr1 59679425 59679453 -137515979 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1040 688 132 153 58 chr1 59679462 59679599 -137515833 - B1_Mur4 SINE Alu 0 150 1 4 1040 408 169 0 0 chr1 59679613 59679690 -137515742 + GA-rich Low_complexity Low_complexity 1 77 0 4 1040 222 37 0 0 chr1 59679722 59679749 -137515683 + (CAAGA)n Simple_repeat Simple_repeat 2 28 0 4 1040 267 292 152 61 chr1 59679773 59679797 -137515635 + MT2B LTR ERVL 136 192 -409 4 1040 418 250 33 0 chr1 59679797 59679889 -137515543 + PB1D10 SINE Alu 4 98 -19 4 1040 267 292 152 61 chr1 59679889 59679937 -137515495 + MT2B LTR ERVL 193 314 -287 4 1040 1243 33 0 0 chr1 59681274 59681424 -137514008 + B2_Mm1a SINE B2 1 150 -43 4 1040 288 0 0 0 chr1 59681424 59681456 -137513976 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 4 1040 1150 86 0 0 chr1 59681476 59681615 -137513817 + B1_Mus2 SINE Alu 2 140 -7 4 1040 243 0 0 0 chr1 59681615 59681642 -137513790 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1040 468 345 82 9 chr1 59682788 59683019 -137512413 - L4 LINE RTE -137 1892 1645 4 1040 273 351 21 78 chr1 59683236 59683378 -137512054 - L4 LINE RTE -538 1491 1358 4 1040 671 223 14 28 chr1 59683423 59683566 -137511866 + 7SK RNA RNA 12 152 -179 4 1040 200 59 29 0 chr1 59683566 59683600 -137511832 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1040 1301 34 0 0 chr1 59683608 59683755 -137511677 - B1_Mm SINE Alu 0 147 1 4 1040 430 216 0 93 chr1 59683757 59683864 -137511568 + 7SK RNA RNA 144 240 -91 4 1040 1496 74 26 0 chr1 59684027 59684216 -137511216 - B2_Mm2 SINE B2 0 195 2 4 1040 448 309 71 6 chr1 59684501 59684683 -137510749 + MER91A DNA Tip100 1 194 -2 4 1040 250 260 49 49 chr1 59686348 59686429 -137509003 - ID2 SINE ID 0 83 3 4 1040 940 188 0 0 chr1 59686621 59686765 -137508667 + B1_Mur2 SINE Alu 1 144 -5 4 1040 1223 46 0 14 chr1 59687430 59687609 -137507823 + B2_Mm1t SINE B2 2 165 -30 4 1040 1420 77 28 0 chr1 59687699 59687881 -137507551 + B2_Mm2 SINE B2 2 188 -7 4 1040 221 379 55 77 chr1 59688094 59688119 -137507313 - MIRb SINE MIR -70 198 180 4 1040 1488 82 0 15 chr1 59688119 59688316 -137507116 - B2_Mm2 SINE B2 0 195 2 4 1040 259 375 70 22 chr1 59688316 59688473 -137506959 - MIRc SINE MIR -89 179 17 4 1040 1281 130 16 0 chr1 59688505 59688689 -137506743 - B2_Mm2 SINE B2 -7 188 2 4 1040 1406 63 91 0 chr1 59689584 59689759 -137505673 + B2_Mm1t SINE B2 1 191 -2 4 1040 208 342 55 0 chr1 59691246 59691319 -137504113 - MIR3 SINE MIR -19 189 113 4 1040 368 257 27 9 chr1 59691905 59692015 -137503417 + PB1D9 SINE Alu 1 112 -8 4 1040 553 214 7 67 chr1 59692558 59692693 -137502739 + B1_Mur2 SINE Alu 23 149 0 4 1040 326 243 97 18 chr1 59693629 59693742 -137501690 - MER3 DNA MER1_type -68 141 20 4 1040 682 128 9 35 chr1 59693951 59694064 -137501368 - B1_Mm SINE Alu 0 147 38 4 1040 299 275 7 110 chr1 59694064 59694105 -137501327 - ID_B1 SINE B4 0 223 86 4 1040 710 258 135 5 chr1 59694108 59694330 -137501102 - MTEb LTR MaLR -128 251 1 4 1040 1092 95 44 0 chr1 59695310 59695468 -137499964 + B2_Mm1t SINE B2 2 166 -27 4 1040 279 0 0 0 chr1 59695477 59695508 -137499924 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1040 369 279 35 18 chr1 59695666 59695779 -137499653 + ID_B1 SINE B4 104 218 -6 4 1040 1409 91 32 5 chr1 59695898 59696086 -137499346 - B2_Mm1t SINE B2 0 193 1 4 1040 420 250 106 0 chr1 59697233 59697337 -137498095 + ID_B1 SINE B4 104 218 -6 4 1040 685 188 22 36 chr1 59697349 59697487 -137497945 + B1_Mur2 SINE Alu 10 145 -4 4 1040 329 315 48 27 chr1 59697609 59697756 -137497676 + HAL1-3A_ME LINE L1 2290 2439 -419 4 1040 1206 68 0 7 chr1 59697987 59698135 -137497297 + B1_Mus1 SINE Alu 2 148 0 4 1040 518 204 146 18 chr1 59698160 59698270 -137497162 - B1_Mur4 SINE Alu -12 138 15 4 1040 230 146 104 0 chr1 59698518 59698566 -137496866 + L1MC4a LINE L1 7820 7872 -10 4 1040 692 185 8 0 chr1 59698659 59698778 -137496654 - B1_Mur4 SINE Alu -25 125 6 4 1040 291 237 73 127 chr1 59698669 59698819 -137496613 - MT2B LTR ERVL -337 264 123 4 1040 26 0 0 0 chr1 59698902 59698928 -137496504 + AT_rich Low_complexity Low_complexity 1 26 0 5 1040 302 319 12 7 chr1 59698936 59698966 -137496466 - ID4 SINE ID -51 101 7 5 1040 302 269 15 0 chr1 59698966 59699033 -137496399 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 5 1040 1218 92 79 17 chr1 59699064 59699241 -137496191 - B2_Mm2 SINE B2 -6 189 2 5 1040 184 288 16 63 chr1 59699516 59699579 -137495853 - MIRm SINE MIR -122 154 95 5 1040 949 212 66 11 chr1 59699920 59700101 -137495331 + B3 SINE B2 2 192 -24 5 1040 722 154 8 8 chr1 59700222 59700340 -137495092 + B1_Mur2 SINE Alu 30 147 -2 5 1040 336 270 39 128 chr1 59700364 59700406 -137495026 - PB1D7 SINE Alu -2 147 3 5 1040 396 283 179 0 chr1 59700406 59700512 -137494920 - ID_B1 SINE B4 -16 208 84 5 1040 273 163 0 0 chr1 59700567 59700616 -137494816 + (CATA)n Simple_repeat Simple_repeat 4 52 0 5 1040 248 290 0 0 chr1 59700623 59700685 -137494747 - ID_B1 SINE B4 -25 199 138 5 1040 966 169 152 0 chr1 59700858 59701042 -137494390 - B3 SINE B2 -4 212 1 5 1040 21 36 0 0 chr1 59701045 59701073 -137494359 + AT_rich Low_complexity Low_complexity 1 28 0 5 1040 1191 76 0 7 chr1 59701739 59701884 -137493548 + B1_Mus1 SINE Alu 5 148 0 5 1040 351 0 0 0 chr1 59701887 59701926 -137493506 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1040 741 204 35 0 chr1 59702401 59702543 -137492889 + B1_Mm SINE Alu 1 147 0 5 1040 234 288 53 27 chr1 59702643 59702718 -137492714 - ID4_ SINE ID -4 79 3 5 1040 1621 207 84 31 chr1 59702727 59703141 -137492291 - Lx9 LINE L1 0 7644 7209 5 1040 271 291 62 12 chr1 59703141 59703221 -137492211 - PB1D7 SINE Alu -34 86 3 5 1040 482 160 113 0 chr1 59703253 59703359 -137492073 + L1M4 LINE L1 4976 5093 -1053 5 1040 608 175 50 0 chr1 59703364 59703484 -137491948 - B1_Mur4 SINE Alu 0 150 25 5 1040 234 256 91 63 chr1 59703492 59703559 -137491873 + L1M4 LINE L1 5191 5251 -895 5 1040 1514 70 38 0 chr1 59703559 59703745 -137491687 + B2_Mm2 SINE B2 1 193 -2 5 1040 234 256 91 63 chr1 59703745 59703852 -137491580 + L1M4 LINE L1 5252 5370 -776 5 1040 229 238 136 45 chr1 59703879 59703967 -137491465 + MTEb LTR MaLR 36 131 -248 5 1040 562 242 114 80 chr1 59703967 59704142 -137491290 + B3A SINE B2 2 182 -16 5 1040 2431 129 87 60 chr1 59704192 59704639 -137490793 - RMER6B LTR ERVK -2 459 1 5 1040 2025 90 27 10 chr1 59704639 59704931 -137490501 - MYSERV6-int LTR ERVK -1191 7768 7472 5 1040 1587 58 37 0 chr1 59704953 59705141 -137490291 - B2_Mm2 SINE B2 0 195 1 5 1040 7151 150 158 112 chr1 59705184 59705526 -137489906 - MYSERV6-int LTR ERVK -2175 6784 6396 5 1040 258 220 0 0 chr1 59705526 59705576 -137489856 - B1_Mus1 SINE Alu -87 61 12 5 1040 7151 150 158 112 chr1 59705576 59706830 -137488602 - MYSERV6-int LTR ERVK -2564 6395 4968 5 1040 242 195 24 0 chr1 59706830 59706871 -137488561 - B1_Mur4 SINE Alu -100 50 9 5 1040 316 243 101 67 chr1 59706848 59706967 -137488465 - MT2B LTR ERVL -314 287 165 5 1040 7151 150 158 112 chr1 59706967 59707526 -137487906 - MYSERV6-int LTR ERVK -2175 4967 4328 5 1040 1687 32 5 0 chr1 59707526 59707713 -137487719 - B2_Mm1t SINE B2 -4 189 2 5 1040 7151 155 129 124 chr1 59707713 59707809 -137487623 - MYSERV6-int LTR ERVK -4632 4327 4238 5 1040 1268 178 4 62 chr1 59707804 59708062 -137487370 - MYSERV6-int LTR ERVK -6648 2311 2069 5 1040 773 171 61 63 chr1 59708062 59708166 -137487266 - B2_Mm2 SINE B2 -10 206 98 5 1040 1267 238 84 77 chr1 59708166 59708663 -137486769 + RLTR16 LTR ERVK 5 505 0 5 1040 773 83 15 76 chr1 59708663 59708756 -137486676 - B2_Mm2 SINE B2 -98 97 3 5 1040 8497 112 26 21 chr1 59708756 59709209 -137486223 - MYSERV6-int LTR ERVK -6926 2033 1566 5 1040 639 0 0 0 chr1 59709209 59709280 -137486152 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1040 868 139 197 55 chr1 59709283 59709466 -137485966 - B3 SINE B2 -6 210 2 5 1040 8497 112 26 21 chr1 59709466 59710310 -137485122 - MYSERV6-int LTR ERVK -7394 1565 726 5 1040 2754 176 18 67 chr1 59710336 59710885 -137484547 - MYSERV6-int LTR ERVK -8435 524 3 5 1040 2469 134 24 17 chr1 59710905 59711315 -137484117 - RMER6B LTR ERVK -46 415 3 5 1040 671 177 16 39 chr1 59711321 59711450 -137483982 + B1_Mur1 SINE Alu 22 147 -2 5 1040 535 179 305 30 chr1 59711482 59711649 -137483783 + B3 SINE B2 4 216 0 5 1040 340 254 0 15 chr1 59711753 59711821 -137483611 + ID2 SINE ID 3 69 -14 5 1040 534 172 121 16 chr1 59712036 59712160 -137483272 + B1_Mur1 SINE Alu 12 148 -1 5 1040 342 179 36 0 chr1 59712537 59712593 -137482839 + B1_Mur4 SINE Alu 4 61 -89 5 1040 201 74 0 0 chr1 59712606 59712633 -137482799 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 5 1040 195 100 0 0 chr1 59712640 59712670 -137482762 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1040 182 121 61 0 chr1 59712770 59712803 -137482629 - MER5A DNA MER1_type -111 78 44 5 1040 1247 61 0 13 chr1 59712860 59713009 -137482423 - B1_Mus1 SINE Alu 0 148 2 5 1040 866 140 124 30 chr1 59713214 59713383 -137482049 + B2_Mm2 SINE B2 3 187 -8 5 1040 1215 69 67 28 chr1 59713979 59714159 -137481273 + B2_Mm2 SINE B2 2 188 -7 5 1040 363 230 48 29 chr1 59714426 59714529 -137480903 + B1_Mur1 SINE Alu 43 147 -2 5 1040 1238 54 0 20 chr1 59714561 59714711 -137480721 + B1_Mm SINE Alu 1 147 0 5 1040 568 199 78 35 chr1 59714724 59714865 -137480567 + B1_Mur3 SINE Alu 3 149 0 5 1040 468 225 63 8 chr1 59714944 59715125 -137480307 + L1M2 LINE L1 5045 5238 -905 5 1040 1775 26 0 0 chr1 59715745 59715937 -137479495 + B2_Mm1a SINE B2 2 193 0 5 1040 243 0 0 0 chr1 59716198 59716225 -137479207 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1040 1076 33 56 68 chr1 59716225 59716386 -137479046 - B2_Mm1a SINE B2 -33 160 2 5 1040 1334 41 0 0 chr1 59716572 59716719 -137478713 - B1_Mm SINE Alu 0 147 1 5 1040 260 224 0 0 chr1 59716733 59716791 -137478641 - ORR1D1 LTR MaLR -6 364 307 5 1040 893 188 40 80 chr1 59716821 59716901 -137478531 - ORR1D1 LTR MaLR -158 216 151 5 1040 1188 88 0 13 chr1 59716901 59717051 -137478381 - B1_Mus1 SINE Alu 0 148 1 5 1040 893 188 40 80 chr1 59717051 59717195 -137478237 - ORR1D1 LTR MaLR -224 150 1 5 1040 1461 61 56 0 chr1 59717669 59717849 -137477583 + B2_Mm2 SINE B2 2 191 -4 5 1040 2302 98 3 99 chr1 59717909 59718214 -137477218 + ORR1A2 LTR MaLR 1 282 -45 5 1040 1220 71 149 0 chr1 59718214 59718382 -137477050 + B2_Mm2 SINE B2 2 194 -1 5 1040 1658 47 11 0 chr1 59718386 59718576 -137476856 + B2_Mm1t SINE B2 1 192 -1 5 1040 2302 98 3 99 chr1 59718576 59718627 -137476805 + ORR1A2 LTR MaLR 283 327 0 5 1040 972 211 55 10 chr1 59718632 59718833 -137476599 + MTD LTR MaLR 1 210 -209 5 1040 2988 32 32 0 chr1 59718833 59719200 -137476232 + L1_Mus1 LINE L1 6209 6567 0 5 1040 380 136 0 70 chr1 59719295 59719366 -137476066 + MTD LTR MaLR 196 261 -158 5 1040 319 198 319 0 chr1 59719997 59720088 -137475344 + B1_Mur1 SINE Alu 18 137 -12 5 1040 429 70 0 0 chr1 59720117 59720174 -137475258 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 5 1040 829 79 24 0 chr1 59720205 59720331 -137475101 + (GAAA)n Simple_repeat Simple_repeat 1 129 0 5 1040 1192 184 231 20 chr1 59720343 59720739 -137474693 + Lx9 LINE L1 7164 7642 -2 5 1040 1258 55 0 14 chr1 59720792 59720940 -137474492 + B1_Mus2 SINE Alu 2 147 0 5 1040 183 114 0 0 chr1 59720940 59720975 -137474457 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1040 451 289 41 0 chr1 59721622 59721743 -137473689 + B1_Mur3 SINE Alu 3 128 -21 5 1040 231 114 0 0 chr1 59721743 59721787 -137473645 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1040 331 175 119 48 chr1 59722106 59722190 -137473242 + PB1D10 SINE Alu 25 114 -3 5 1040 499 261 123 17 chr1 59722307 59722486 -137472946 + B3A SINE B2 1 198 0 5 1040 224 200 0 0 chr1 59722570 59722610 -137472822 + B3A SINE B2 2 41 -157 5 1040 233 220 254 0 chr1 59722901 59722960 -137472472 + B1F2 SINE Alu 42 115 -5 5 1040 249 57 0 0 chr1 59723090 59723125 -137472307 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 5 1040 684 89 0 10 chr1 59723216 59723318 -137472114 + B1_Mus2 SINE Alu 47 147 0 5 1040 1085 223 10 0 chr1 59723526 59723732 -137471700 + B3 SINE B2 3 210 -6 5 1040 418 188 0 145 chr1 59723736 59723867 -137471565 + MT2B LTR ERVL 153 264 -337 5 1040 1098 56 0 7 chr1 59723760 59723903 -137471529 + B1_Mus1 SINE Alu 7 148 0 5 1040 373 184 359 28 chr1 59724013 59724119 -137471313 + B1_Mur2 SINE Alu 2 142 -7 5 1040 1141 68 0 20 chr1 59724283 59724433 -137470999 + B1_Mm SINE Alu 1 147 0 5 1040 293 277 119 0 chr1 59724678 59724779 -137470653 + MLT1H1 LTR MaLR 1 113 -442 5 1040 893 124 85 0 chr1 59724793 59724946 -137470486 + B2_Mm2 SINE B2 30 195 0 5 1040 414 256 175 8 chr1 59724952 59725078 -137470354 + B1_Mus1 SINE Alu 1 147 -1 5 1040 226 271 81 23 chr1 59725109 59725196 -137470236 - Charlie1b DNA MER1_type -215 308 217 5 1040 341 235 43 0 chr1 59725203 59725285 -137470147 + B1F2 SINE Alu 2 91 -29 5 1040 195 100 0 0 chr1 59725353 59725383 -137470049 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1040 295 273 148 43 chr1 59725386 59725501 -137469931 + B1F1 SINE Alu 3 129 -20 5 1040 212 285 130 61 chr1 59725501 59725517 -137469915 + ID_B1 SINE B4 84 223 -1 5 1040 284 245 65 0 chr1 59725832 59725971 -137469461 + ORR1B1-int LTR MaLR 605 752 -757 5 1040 601 74 95 0 chr1 59725876 59725971 -137469461 + B1_Mus2 SINE Alu 2 105 -42 5 1040 836 159 14 0 chr1 59726146 59726284 -137469148 + B1_Mur4 SINE Alu 2 141 -9 5 1040 326 266 139 67 chr1 59727348 59727513 -137467919 + L1MDb LINE L1 542 718 -5691 5 1040 450 132 121 0 chr1 59728032 59728115 -137467317 + B1_Mur4 SINE Alu 43 135 -15 5 1040 632 165 8 50 chr1 59728167 59728288 -137467144 - B1_Mur2 SINE Alu 0 149 34 5 1040 647 253 67 21 chr1 59728577 59728771 -137466661 + B3 SINE B2 11 213 -3 5 1040 231 268 60 30 chr1 59728795 59728895 -137466537 + L1M2 LINE L1 4915 5017 -1126 5 1040 465 167 217 18 chr1 59728905 59729066 -137466366 - B2_Mm2 SINE B2 -5 190 1 5 1040 1308 85 11 0 chr1 59729081 59729257 -137466175 - B2_Mm1a SINE B2 -14 179 2 5 1040 1502 154 94 20 chr1 59729261 59729611 -137465821 - MTB_Mm LTR MaLR -8 411 1 6 1040 217 206 30 20 chr1 59729632 59729731 -137465701 + (TA)n Simple_repeat Simple_repeat 2 101 0 6 1040 930 169 0 21 chr1 59729737 59729882 -137465550 - B1_Mur3 SINE Alu -6 143 2 6 1040 237 292 125 102 chr1 59730635 59730948 -137464484 - ORR1D1 LTR MaLR -18 356 37 6 1040 1134 73 104 0 chr1 59730954 59731118 -137464314 + B2_Mm2 SINE B2 1 181 -14 6 1040 697 225 14 14 chr1 59731224 59731364 -137464068 + B1_Mur2 SINE Alu 2 141 -8 6 1040 536 176 108 22 chr1 59731389 59731528 -137463904 + B2_Mm2 SINE B2 8 158 -37 6 1040 229 373 44 57 chr1 59731528 59731546 -137463886 + RSINE1 SINE B4 9 163 -2 6 1040 270 0 0 0 chr1 59731641 59731671 -137463761 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1040 201 254 83 17 chr1 59731675 59731735 -137463697 - MIR SINE MIR -102 160 97 6 1040 231 240 180 0 chr1 59731860 59731910 -137463522 + ID4 SINE ID 10 68 -15 6 1040 1092 63 0 0 chr1 59731924 59732082 -137463350 + (TC)n Simple_repeat Simple_repeat 1 158 0 6 1040 350 268 12 0 chr1 59732082 59732164 -137463268 - B1F SINE Alu -62 87 5 6 1040 744 276 35 15 chr1 59732169 59732371 -137463061 - B4A SINE B4 -85 207 2 6 1040 272 299 69 0 chr1 59732381 59732468 -137462964 - PB1D10 SINE Alu -6 111 19 6 1040 622 235 111 0 chr1 59732400 59732553 -137462879 - ID_B1 SINE B4 -54 170 1 6 1040 448 267 8 91 chr1 59732553 59732669 -137462763 + ID_B1 SINE B4 120 224 0 6 1040 243 104 62 0 chr1 59732629 59732677 -137462755 + FAM SINE Alu 265 315 0 6 1040 1545 37 5 10 chr1 59732708 59732901 -137462531 + B2_Mm1t SINE B2 2 193 0 6 1040 370 150 246 80 chr1 59732934 59733072 -137462360 - B2_Mm2 SINE B2 -5 190 30 6 1040 194 59 0 29 chr1 59733077 59733087 -137462345 + (TAAAA)n Simple_repeat Simple_repeat 4 13 0 6 1040 1408 77 16 0 chr1 59733087 59733269 -137462163 + B2_Mm2 SINE B2 2 186 -9 6 1040 194 59 0 29 chr1 59733269 59733293 -137462139 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 6 1040 1343 46 58 0 chr1 59733299 59733472 -137461960 + B2_Mm2 SINE B2 3 185 -10 6 1040 198 0 0 0 chr1 59733480 59733502 -137461930 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 6 1040 292 302 125 0 chr1 59733513 59733609 -137461823 - PB1D7 SINE Alu -12 108 1 6 1040 270 0 0 0 chr1 59733990 59734020 -137461412 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1040 212 324 44 0 chr1 59734025 59734093 -137461339 - ID4 SINE ID -4 79 9 6 1040 1239 48 0 0 chr1 59734118 59734265 -137461167 - B1_Mm SINE Alu 0 147 1 6 1040 236 362 93 13 chr1 59734405 59734556 -137460876 - B4A SINE B4 -45 247 85 6 1040 501 299 75 0 chr1 59734672 59734806 -137460626 + ID_B1 SINE B4 81 224 0 6 1040 295 283 333 0 chr1 59734850 59734949 -137460483 + RSINE1 SINE B4 34 165 0 6 1040 228 333 57 14 chr1 59735052 59735122 -137460310 + RLTR20C LTR ERVK 77 149 -385 6 1040 396 131 18 196 chr1 59735107 59735273 -137460159 + RMER17C LTR ERVK 80 269 -98 6 1040 1095 59 0 0 chr1 59735273 59735408 -137460024 - B1_Mus2 SINE Alu -12 135 1 6 1040 396 116 16 221 chr1 59735408 59735508 -137459924 + RMER17C LTR ERVK 190 273 -137 6 1040 225 231 152 15 chr1 59735568 59735634 -137459798 - ID_B1 SINE B4 -2 222 148 6 1040 1312 86 37 16 chr1 59735679 59735869 -137459563 + B2_Mm2 SINE B2 2 195 0 6 1040 371 21 21 0 chr1 59736021 59736069 -137459363 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1040 623 45 0 63 chr1 59736311 59736406 -137459026 + RMER17A LTR ERVK 1 89 -662 6 1040 455 267 57 0 chr1 59736687 59736792 -137458640 - ID_B1 SINE B4 -30 194 84 6 1040 2754 144 127 36 chr1 59736831 59736884 -137458548 - RMER4B LTR ERVK 0 585 537 6 1040 1621 21 16 0 chr1 59736884 59737072 -137458360 - B2_Mm1t SINE B2 -1 192 2 6 1040 2754 144 127 36 chr1 59737072 59737552 -137457880 - RMER4B LTR ERVK -49 536 3 6 1040 357 275 35 35 chr1 59737787 59737900 -137457532 + PB1D10 SINE Alu 5 117 0 6 1040 865 196 0 7 chr1 59737958 59738107 -137457325 + B1_Mur3 SINE Alu 1 148 -1 6 1040 1074 78 0 21 chr1 59738214 59738359 -137457073 + B1_Mus1 SINE Alu 2 143 -5 6 1040 1370 69 6 0 chr1 59738416 59738591 -137456841 - B2_Mm2 SINE B2 -18 177 2 6 1040 744 65 0 0 chr1 59738672 59738779 -137456653 + (TC)n Simple_repeat Simple_repeat 2 108 0 6 1040 1093 66 79 0 chr1 59738786 59738938 -137456494 - B2_Mm2 SINE B2 -31 164 1 6 1040 1255 112 0 5 chr1 59738943 59739132 -137456300 - B2_Mm2 SINE B2 -6 189 2 6 1040 1250 87 46 0 chr1 59739213 59739386 -137456046 - B2_Mm2 SINE B2 -14 181 1 6 1040 1304 97 16 0 chr1 59739424 59739609 -137455823 + B2_Mm2 SINE B2 2 189 -6 6 1040 749 231 81 21 chr1 59739672 59739858 -137455574 - B3A SINE B2 -1 197 1 6 1040 472 211 11 0 chr1 59740739 59740829 -137454603 + PB1D10 SINE Alu 26 116 -1 6 1040 701 248 31 53 chr1 59740833 59741059 -137454373 + ID_B1 SINE B4 3 223 -1 6 1040 335 282 0 0 chr1 59741070 59741141 -137454291 + ID_B1 SINE B4 150 220 -4 6 1040 464 260 23 38 chr1 59741323 59741455 -137453977 + B3A SINE B2 22 151 -47 6 1040 27 29 0 0 chr1 59741573 59741607 -137453825 + AT_rich Low_complexity Low_complexity 1 34 0 6 1040 189 0 0 0 chr1 59741675 59741696 -137453736 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1040 1216 95 28 0 chr1 59742391 59742570 -137452862 - B2_Mm2 SINE B2 -11 184 1 6 1040 790 184 14 0 chr1 59742587 59742728 -137452704 - B1_Mur4 SINE Alu -7 143 1 6 1040 230 182 0 0 chr1 59742736 59742780 -137452652 - PB1D9 SINE Alu -8 112 69 6 1040 1085 88 0 0 chr1 59742868 59743015 -137452417 - B1_Mus1 SINE Alu -1 147 1 6 1040 617 176 11 5 chr1 59743722 59743835 -137451597 - B3 SINE B2 -75 118 8 6 1040 318 227 45 0 chr1 59744428 59744494 -137450938 + ID4 SINE ID 2 70 -13 6 1040 567 13 24 60 chr1 59744605 59744688 -137450744 - B2_Mm2 SINE B2 -101 94 15 6 1040 25 0 0 0 chr1 59744690 59744715 -137450717 + AT_rich Low_complexity Low_complexity 1 25 0 6 1040 207 0 0 0 chr1 59744736 59744759 -137450673 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1040 1043 101 0 14 chr1 59744763 59744904 -137450528 - B1_Mm SINE Alu -7 140 2 6 1040 834 170 115 16 chr1 59745093 59745284 -137450148 + B3 SINE B2 1 210 -6 6 1040 641 208 184 6 chr1 59745653 59745832 -137449600 + B3 SINE B2 1 211 -5 6 1040 270 207 0 0 chr1 59745854 59745912 -137449520 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 6 1040 734 110 158 45 chr1 59746242 59746375 -137449057 - B1_Mus1 SINE Alu 0 148 1 6 1040 1204 104 35 0 chr1 59746444 59746617 -137448815 - B2_Mm1t SINE B2 -14 179 1 6 1040 476 315 52 41 chr1 59746791 59746963 -137448469 - B3A SINE B2 -24 174 1 6 1040 1156 133 0 0 chr1 59747416 59747589 -137447843 + B2_Mm2 SINE B2 2 174 -21 6 1040 516 159 212 0 chr1 59747758 59747871 -137447561 - B1_Mur3 SINE Alu -10 139 3 6 1040 346 188 29 14 chr1 59749000 59749070 -137446362 - BC1_Mm scRNA scRNA -78 74 4 6 1040 471 321 14 7 chr1 59749512 59749650 -137445782 - L4 LINE RTE -466 1563 1425 6 1040 360 0 0 0 chr1 59749742 59749782 -137445650 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1040 961 104 8 0 chr1 59750112 59750246 -137445186 - B1_Mm SINE Alu 0 147 13 6 1040 315 317 0 35 chr1 59750679 59750764 -137444668 - B4 SINE B4 -209 83 2 6 1040 359 319 25 16 chr1 59750899 59751020 -137444412 - RSINE1 SINE B4 -43 122 1 6 1040 483 243 12 116 chr1 59751038 59751210 -137444222 - B2_Mm2 SINE B2 -9 186 33 6 1040 1402 78 21 10 chr1 59751339 59751532 -137443900 + B2_Mm2 SINE B2 1 195 0 6 1040 988 225 15 25 chr1 59751609 59751807 -137443625 + B3 SINE B2 20 213 -3 6 1040 232 286 206 0 chr1 59751870 59751933 -137443499 - ID4_ SINE ID -6 77 2 6 1040 239 313 60 12 chr1 59752018 59752047 -137443385 + B4 SINE B4 54 86 -206 6 1040 325 267 128 10 chr1 59752047 59752149 -137443283 + B1_Mus1 SINE Alu 2 115 -5 6 1040 306 0 0 0 chr1 59752160 59752194 -137443238 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6 1040 1287 38 0 0 chr1 59752195 59752353 -137443079 - B2_Mm1t SINE B2 -34 159 2 6 1040 409 254 26 26 chr1 59752375 59752492 -137442940 - PB1D7 SINE Alu -2 118 2 6 1040 284 289 67 45 chr1 59752492 59752508 -137442924 - ID_B1 SINE B4 -22 201 66 6 1040 960 61 106 0 chr1 59752541 59752673 -137442759 - B1_Mus2 SINE Alu 0 147 2 6 1040 28 0 0 0 chr1 59752704 59752732 -137442700 + AT_rich Low_complexity Low_complexity 1 28 0 6 1040 1250 74 51 6 chr1 59753650 59753826 -137441606 - B2_Mm2 SINE B2 -10 185 2 6 1040 458 319 41 29 chr1 59753856 59754027 -137441405 + B3A SINE B2 3 175 -23 6 1040 742 109 281 39 chr1 59754038 59754191 -137441241 + B2_Mm2 SINE B2 1 190 -5 6 1040 216 287 43 75 chr1 59754467 59754484 -137440948 + B1F SINE Alu 11 30 -119 6 1040 2709 112 8 2 chr1 59754484 59754885 -137440547 - RLTR9D LTR ERVK 0 403 1 6 1040 216 287 43 75 chr1 59754885 59754961 -137440471 + B1F SINE Alu 31 101 -48 6 1040 628 98 22 2 chr1 59754962 59755072 -137440360 - B1_Mus1 SINE Alu 0 120 1 6 1040 371 242 31 10 chr1 59754991 59755087 -137440345 - B4 SINE B4 -125 167 70 7 1040 872 182 0 0 chr1 59755485 59755633 -137439799 - B1_Mus1 SINE Alu 0 148 1 7 1040 416 318 130 32 chr1 59755742 59755995 -137439437 - B4A SINE B4 -4 288 11 7 1040 297 238 286 0 chr1 59756049 59756133 -137439299 + B1_Mus2 SINE Alu 5 112 -35 7 1040 838 146 36 0 chr1 59756220 59756357 -137439075 + B1_Mus1 SINE Alu 1 142 -6 7 1040 270 0 0 0 chr1 59756363 59756393 -137439039 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7 1040 1272 98 38 11 chr1 59756594 59756779 -137438653 + B2_Mm2 SINE B2 2 191 -4 7 1040 1152 107 6 0 chr1 59756917 59757094 -137438338 + B2_Mm1t SINE B2 16 193 0 7 1040 305 308 42 12 chr1 59757324 59757423 -137438009 + PB1D10 SINE Alu 17 115 -2 7 1040 547 256 62 39 chr1 59757448 59757627 -137437805 + B4 SINE B4 47 229 -63 7 1040 1061 79 7 0 chr1 59758180 59758319 -137437113 - B1_Mus1 SINE Alu -8 140 1 7 1040 1430 73 16 0 chr1 59758367 59758558 -137436874 + B2_Mm2 SINE B2 2 195 0 7 1040 361 308 77 98 chr1 59758600 59758720 -137436712 + L1MB7 LINE L1 5623 5749 -435 7 1040 1140 117 55 6 chr1 59758720 59758901 -137436531 + B2_Mm2 SINE B2 1 190 -5 7 1040 361 308 77 98 chr1 59758901 59759014 -137436418 + L1MB7 LINE L1 5750 5851 -333 7 1040 445 309 40 8 chr1 59759211 59759335 -137436097 - RSINE1 SINE B4 -24 141 14 7 1040 290 235 215 47 chr1 59759348 59759455 -137435977 - B1_Mur1 SINE Alu -1 148 24 7 1040 784 194 15 0 chr1 59759953 59760087 -137435345 - B1_Mus1 SINE Alu -8 140 5 7 1040 1120 209 130 46 chr1 59760178 59760570 -137434862 - RLTR40 LTR ERVK -366 451 27 7 1040 472 222 73 18 chr1 59760582 59760692 -137434740 + B1_Mm SINE Alu 27 142 -5 7 1040 25 51 0 0 chr1 59762396 59762435 -137432997 + AT_rich Low_complexity Low_complexity 1 39 0 7 1040 378 337 56 77 chr1 59762642 59762838 -137432594 - B3 SINE B2 -23 193 2 7 1040 451 232 0 59 chr1 59764044 59764145 -137431287 + B3 SINE B2 1 95 -121 7 1040 279 133 0 0 chr1 59764198 59764243 -137431189 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1040 327 229 0 0 chr1 59764258 59764319 -137431113 + B3A SINE B2 5 65 -133 7 1040 370 290 97 0 chr1 59764642 59764766 -137430666 - RSINE1 SINE B4 -6 159 24 7 1040 405 298 0 31 chr1 59765044 59765141 -137430291 + ID_B1 SINE B4 118 211 -13 7 1040 265 329 13 0 chr1 59765192 59765268 -137430164 - PB1D10 SINE Alu -40 77 1 7 1040 693 309 31 10 chr1 59766870 59767063 -137428369 - B4A SINE B4 -88 204 8 7 1040 207 114 0 0 chr1 59767346 59767381 -137428051 + (GGA)n Simple_repeat Simple_repeat 2 36 0 7 1040 684 120 143 82 chr1 59767691 59767873 -137427559 - B2_Mm2 SINE B2 -1 194 2 7 1040 214 324 92 66 chr1 59767901 59767977 -137427455 - ID4_ SINE ID -4 79 2 7 1040 189 107 0 0 chr1 59768121 59768149 -137427283 + (GAA)n Simple_repeat Simple_repeat 3 30 0 7 1040 330 219 333 8 chr1 59768638 59768767 -137426665 - ID_B1 SINE B4 -7 217 47 7 16 256 314 227 7 chr1 59768808 59768949 -137426483 - B3 SINE B2 -11 205 34 7 1041 250 206 222 20 chr1 59769109 59769208 -137426224 - PB1D9 SINE Alu -1 119 1 7 1041 940 95 65 7 chr1 59769518 59769656 -137425776 + B1_Mus2 SINE Alu 2 147 0 7 1041 518 0 16 0 chr1 59769658 59769720 -137425712 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1041 421 104 0 0 chr1 59769805 59769872 -137425560 - B1_Mus2 SINE Alu 0 147 81 7 1041 556 262 125 5 chr1 59770506 59770690 -137424742 - B3 SINE B2 -5 211 6 7 1041 237 297 31 0 chr1 59770866 59770930 -137424502 - tRNA-Ala-GCA tRNA tRNA -8 67 2 7 1041 426 266 54 8 chr1 59771614 59771743 -137423689 + B1F2 SINE Alu 9 143 -6 7 1041 305 223 230 7 chr1 59771809 59771901 -137423531 + PB1D9 SINE Alu 2 103 -17 7 1041 1603 47 0 0 chr1 59772086 59772278 -137423154 - B2_Mm1a SINE B2 0 193 2 7 1041 603 268 155 78 chr1 59773075 59773346 -137422086 + B4 SINE B4 1 292 0 7 1041 817 30 0 0 chr1 59773600 59773700 -137421732 - B1_Mus2 SINE Alu -2 145 46 7 1041 499 150 19 51 chr1 59773796 59773910 -137421522 - B1_Mus2 SINE Alu 0 120 1 7 1041 356 152 0 0 chr1 59773857 59773911 -137421521 - B4 SINE B4 -154 138 85 7 1041 494 171 267 0 chr1 59773911 59774016 -137421416 - B1_Mur3 SINE Alu -16 133 1 7 1041 654 254 64 45 chr1 59774040 59774242 -137421190 - B3 SINE B2 -10 206 1 7 1041 668 193 22 29 chr1 59774290 59774429 -137421003 + B1_Mm SINE Alu 9 146 -1 7 1041 236 279 59 0 chr1 59774458 59774526 -137420906 + B3A SINE B2 5 76 -122 7 1041 735 136 22 22 chr1 59774628 59774763 -137420669 - B1_Mus1 SINE Alu -6 142 8 7 1041 284 212 29 29 chr1 59774742 59774810 -137420622 - PB1D9 SINE Alu -8 112 45 7 1041 1053 180 44 0 chr1 59774788 59774971 -137420461 - B3 SINE B2 -23 193 3 7 1041 1013 37 97 0 chr1 59775552 59775686 -137419746 + B1_Mus2 SINE Alu 1 147 0 7 1041 785 137 61 0 chr1 59776070 59776201 -137419231 + B1_Mur4 SINE Alu 3 141 -9 7 1041 937 160 21 0 chr1 59776549 59776693 -137418739 - B1_Mus2 SINE Alu 0 147 1 7 1041 319 112 359 0 chr1 59777023 59777129 -137418303 - B2_Mm2 SINE B2 -5 190 47 7 1041 1214 114 23 0 chr1 59777213 59777389 -137418043 - B2_Mm2 SINE B2 -14 181 2 7 1041 727 291 51 5 chr1 59777395 59777592 -137417840 - B3 SINE B2 -10 206 1 7 1041 505 265 19 29 chr1 59777621 59777726 -137417706 + PB1D10 SINE Alu 6 109 -8 7 1041 438 260 156 8 chr1 59777735 59777863 -137417569 + B1_Mur1 SINE Alu 1 147 -2 7 1041 1040 115 0 0 chr1 59778013 59778169 -137417263 - B2_Mm2 SINE B2 -39 156 1 7 1041 1179 117 22 0 chr1 59778301 59778481 -137416951 + RLTR13D4 LTR ERVK 1 184 -849 7 1041 369 109 0 0 chr1 59778482 59778546 -137416886 + (T)n Simple_repeat Simple_repeat 1 64 0 7 1041 1066 49 0 0 chr1 59778546 59778688 -137416744 - B1_Mus1 SINE Alu 0 148 7 7 1041 1161 64 6 0 chr1 59778693 59778850 -137416582 + RLTR13D4 LTR ERVK 163 320 -703 7 1041 516 137 48 29 chr1 59778841 59778946 -137416486 + RLTR13D4 LTR ERVK 891 997 -26 7 1041 477 31 0 0 chr1 59778949 59779013 -137416419 - B1_Mus2 SINE Alu -51 96 33 7 1041 271 250 156 0 chr1 59779014 59779110 -137416322 + B4 SINE B4 131 241 -51 7 1041 248 252 68 161 chr1 59779185 59779346 -137416086 + B3A SINE B2 70 215 -1 7 1041 635 157 102 8 chr1 59779379 59779507 -137415925 - B1_Mur2 SINE Alu 0 149 10 7 1041 421 252 77 101 chr1 59779532 59779557 -137415875 + B4 SINE B4 60 80 -212 7 1041 906 72 45 3 chr1 59779557 59779703 -137415729 + B1_Mm SINE Alu 1 148 0 7 1041 397 244 35 11 chr1 59779729 59779816 -137415616 + B1F SINE Alu 11 99 -50 7 1041 1050 156 88 5 chr1 59780537 59780730 -137414702 + B3 SINE B2 2 210 -6 7 1041 624 236 41 7 chr1 59780745 59780890 -137414542 + B1_Mur4 SINE Alu 1 150 0 7 1041 260 293 0 13 chr1 59780890 59780956 -137414476 + GA-rich Low_complexity Low_complexity 11 75 0 7 1041 1645 47 0 0 chr1 59780959 59781152 -137414280 + B2_Mm1t SINE B2 1 193 0 7 1041 965 132 0 0 chr1 59781213 59781357 -137414075 + B1_Mus2 SINE Alu 4 147 0 7 1041 540 167 117 62 chr1 59781372 59781500 -137413932 - B1_Mus2 SINE Alu -8 139 5 7 1041 263 235 21 96 chr1 59781416 59781510 -137413922 - B4 SINE B4 -125 167 81 7 1041 381 239 52 52 chr1 59781524 59781639 -137413793 - PB1 SINE Alu 0 127 13 7 1041 603 27 0 0 chr1 59781644 59781717 -137413715 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1041 1239 54 0 0 chr1 59781925 59782073 -137413359 + B1_Mus1 SINE Alu 1 148 0 7 1041 195 247 0 0 chr1 59782089 59782162 -137413270 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 7 1041 307 285 20 81 chr1 59782336 59782485 -137412947 - RSINE1 SINE B4 0 165 26 7 1041 249 268 13 90 chr1 59782945 59783023 -137412409 + ID4 SINE ID 4 75 -77 7 1041 1199 62 7 0 chr1 59783114 59783260 -137412172 - B1_Mus2 SINE Alu 0 147 1 7 1041 351 162 0 0 chr1 59783562 59783642 -137411790 + T-rich Low_complexity Low_complexity 1 80 0 7 1041 1204 54 0 0 chr1 59783642 59783789 -137411643 - B1_Mm SINE Alu 0 147 1 7 1041 901 73 126 93 chr1 59783885 59784067 -137411365 - B2_Mm2 SINE B2 -6 189 2 7 1041 583 182 127 0 chr1 59784144 59784270 -137411162 + B1_Mur4 SINE Alu 2 143 -7 7 1041 189 0 0 0 chr1 59784271 59784292 -137411140 + (GGA)n Simple_repeat Simple_repeat 1 21 0 7 1041 976 136 0 11 chr1 59784293 59784471 -137410961 + (GAA)n Simple_repeat Simple_repeat 1 176 0 7 1041 396 0 0 0 chr1 59784500 59784544 -137410888 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1041 401 331 8 0 chr1 59784555 59784682 -137410750 - RSINE1 SINE B4 -35 130 3 7 1041 809 176 227 0 chr1 59784713 59784889 -137410543 - B3 SINE B2 0 216 1 7 1041 453 243 63 14 chr1 59784900 59785042 -137410390 - B1F2 SINE Alu 0 149 1 7 1041 387 0 0 0 chr1 59785046 59785089 -137410343 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7 1041 252 261 153 61 chr1 59785103 59785201 -137410231 - PB1D10 SINE Alu -10 107 1 7 1041 1174 48 7 0 chr1 59785672 59785818 -137409614 + B1_Mus2 SINE Alu 1 147 0 7 1041 276 111 0 0 chr1 59785819 59785864 -137409568 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1041 312 179 0 18 chr1 59786286 59786343 -137409089 - PB1D7 SINE Alu -62 58 3 8 1041 429 271 0 36 chr1 59786385 59786496 -137408936 - PB1D10 SINE Alu -8 109 3 8 1041 1253 40 0 0 chr1 59786788 59786936 -137408496 - B1_Mus1 SINE Alu 0 148 1 8 1041 442 270 107 30 chr1 59787117 59787285 -137408147 + MT2A LTR ERVL 347 527 -6 8 1041 230 224 52 0 chr1 59787521 59787579 -137407853 + GA-rich Low_complexity Low_complexity 4 64 0 8 1041 279 0 0 0 chr1 59788118 59788149 -137407283 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 8 1041 958 101 7 41 chr1 59788150 59788295 -137407137 - B1_Mus1 SINE Alu -8 140 1 8 1041 729 146 0 0 chr1 59788314 59788437 -137406995 + (TTC)n Simple_repeat Simple_repeat 2 124 0 8 1041 672 156 46 15 chr1 59788466 59788596 -137406836 - B1_Mus1 SINE Alu 0 148 15 8 1041 204 40 0 0 chr1 59788618 59788643 -137406789 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 8 1041 594 175 30 38 chr1 59788692 59788823 -137406609 - B3 SINE B2 -86 130 1 8 1041 471 281 30 42 chr1 59788846 59789013 -137406419 - B3A SINE B2 -28 170 6 8 1041 218 175 0 0 chr1 59789102 59789142 -137406290 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 8 1041 301 181 83 21 chr1 59789231 59789327 -137406105 + RMER10A LTR ERVL 328 429 -13 8 1041 276 227 69 49 chr1 59789331 59789433 -137405999 + LTR40b LTR ERVL 304 407 -55 8 1041 184 279 0 16 chr1 59789795 59789857 -137405575 - L2c LINE L2 -302 3085 3025 8 1041 229 200 33 0 chr1 59789936 59789996 -137405436 - LTR40a LTR ERVL -55 464 403 8 1041 613 277 53 0 chr1 59790500 59790688 -137404744 + B3A SINE B2 1 198 0 8 1041 3566 120 181 8 chr1 59790737 59791365 -137404067 + RMER19A LTR ERVK 1 737 0 8 1041 565 297 38 6 chr1 59791372 59791555 -137403877 + B4A SINE B4 28 216 -76 8 1041 378 0 0 0 chr1 59791643 59791685 -137403747 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1041 336 217 0 14 chr1 59791688 59791758 -137403674 + PB1 SINE Alu 45 113 -14 8 1041 192 77 0 0 chr1 59791760 59791786 -137403646 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 8 1041 913 143 7 20 chr1 59791849 59791999 -137403433 + B1_Mus1 SINE Alu 1 148 0 8 1041 708 244 24 80 chr1 59792049 59792299 -137403133 + MLT1A1 LTR MaLR 173 408 0 8 1041 224 137 20 0 chr1 59792478 59792529 -137402903 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1041 251 307 40 0 chr1 59792810 59792885 -137402547 + PB1D10 SINE Alu 29 106 -11 8 1041 294 29 0 0 chr1 59793014 59793049 -137402383 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1041 201 74 0 0 chr1 59793049 59793076 -137402356 + (TGG)n Simple_repeat Simple_repeat 1 27 0 8 1041 1985 77 17 101 chr1 59793113 59793224 -137402208 + ORR1A2 LTR MaLR 2 100 -227 8 1041 1039 95 7 26 chr1 59793224 59793375 -137402057 + B1_Mus1 SINE Alu 1 148 0 8 1041 1985 77 17 101 chr1 59793375 59793610 -137401822 + ORR1A2 LTR MaLR 101 319 -8 8 1041 738 198 0 0 chr1 59793610 59793736 -137401696 - B1_Mur3 SINE Alu -12 137 12 8 1041 340 219 0 125 chr1 59793643 59793763 -137401669 - MT2B LTR ERVL -344 257 153 8 1041 1452 58 10 10 chr1 59793808 59794000 -137401432 - B2_Mm1t SINE B2 -1 192 1 8 1041 1588 57 0 0 chr1 59794203 59794396 -137401036 + B2_Mm1t SINE B2 1 193 0 8 1041 1133 68 0 26 chr1 59794577 59794728 -137400704 + B1_Mus1 SINE Alu 2 148 0 8 1041 258 132 0 0 chr1 59794729 59794782 -137400650 + (A)n Simple_repeat Simple_repeat 1 53 0 8 1041 324 0 0 0 chr1 59794840 59794876 -137400556 + (TAA)n Simple_repeat Simple_repeat 3 38 0 8 1041 190 149 63 36 chr1 59794893 59795004 -137400428 + (TTATA)n Simple_repeat Simple_repeat 1 114 0 8 1041 30 0 0 0 chr1 59795030 59795060 -137400372 + AT_rich Low_complexity Low_complexity 1 30 0 8 1041 743 259 119 0 chr1 59795065 59795258 -137400174 - B3 SINE B2 0 216 1 8 1041 1003 141 0 0 chr1 59795277 59795426 -137400006 - B1_Mur4 SINE Alu -1 149 1 8 1041 595 273 28 0 chr1 59795437 59795580 -137399852 - B1F SINE Alu -1 148 2 8 1041 356 310 26 17 chr1 59796032 59796147 -137399285 - RSINE1 SINE B4 -44 121 6 8 1041 437 257 44 7 chr1 59796162 59796299 -137399133 - B1_Mur1 SINE Alu 0 149 8 8 1041 245 222 16 0 chr1 59796925 59796988 -137398444 - ID2 SINE ID -16 67 4 8 1041 328 296 135 8 chr1 59797244 59797370 -137398062 - B1F2 SINE Alu -5 144 3 8 1041 549 192 0 0 chr1 59797432 59797536 -137397896 - B1_Mur2 SINE Alu 0 149 46 8 1041 1520 43 27 0 chr1 59797606 59797793 -137397639 - B2_Mm1a SINE B2 0 193 2 8 1041 295 237 119 22 chr1 59797793 59797927 -137397505 + L1M4 LINE L1 4713 4859 -1287 8 1041 262 302 8 65 chr1 59798052 59798176 -137397256 + L1M4 LINE L1 4885 5001 -1145 8 1041 254 323 0 0 chr1 59798286 59798382 -137397050 + G-rich Low_complexity Low_complexity 58 153 0 8 1041 555 108 39 19 chr1 59798384 59798488 -137396944 + B1_Mus2 SINE Alu 42 147 0 8 1041 210 143 0 0 chr1 59798504 59798539 -137396893 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1041 927 204 42 61 chr1 59798546 59798760 -137396672 + B3 SINE B2 1 210 -6 8 1041 365 282 34 8 chr1 59798810 59798928 -137396504 + B1F2 SINE Alu 19 139 -10 8 1041 358 319 64 112 chr1 59798925 59798975 -137396457 - ID_B1 SINE B4 -45 179 149 8 1041 1514 53 32 0 chr1 59798975 59799163 -137396269 - B2_Mm2 SINE B2 0 195 2 8 1041 358 319 64 112 chr1 59799163 59799299 -137396133 - ID_B1 SINE B4 -76 148 2 8 1041 196 221 26 0 chr1 59799362 59799439 -137395993 + (TA)n Simple_repeat Simple_repeat 1 79 0 8 1041 829 70 0 0 chr1 59799553 59799667 -137395765 + B1_Mus1 SINE Alu 35 148 0 8 1041 219 139 0 0 chr1 59799669 59799705 -137395727 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1041 253 296 173 29 chr1 59799714 59799853 -137395579 + RSINE1 SINE B4 3 161 -4 8 1041 1026 234 61 21 chr1 59800472 59800752 -137394680 + B4 SINE B4 2 292 0 8 1041 1082 111 0 0 chr1 59801139 59801283 -137394149 + B1_Mus2 SINE Alu 2 145 -2 8 1041 231 266 49 37 chr1 59801327 59801409 -137394023 - B1F2 SINE Alu -55 94 12 8 1041 465 66 0 0 chr1 59801431 59801492 -137393940 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 8 1041 2206 185 80 2 chr1 59801615 59802091 -137393341 - RMER20A LTR ERVK 0 516 4 8 1041 330 252 121 0 chr1 59802119 59802218 -137393214 + PB1D10 SINE Alu 6 116 -1 8 1041 978 84 7 7 chr1 59802324 59802467 -137392965 - B1_Mm SINE Alu 0 147 5 8 1041 1049 30 0 0 chr1 59802455 59802590 -137392842 - B2_Mm2 SINE B2 -59 136 2 8 1041 983 238 9 14 chr1 59802596 59802813 -137392619 - B3 SINE B2 0 216 1 8 1041 552 196 10 0 chr1 59802813 59802910 -137392522 - B4A SINE B4 -192 100 3 8 1041 234 0 0 0 chr1 59802914 59802940 -137392492 + (TAA)n Simple_repeat Simple_repeat 1 26 0 8 1041 261 0 0 0 chr1 59802940 59802969 -137392463 + (TTA)n Simple_repeat Simple_repeat 3 31 0 8 1041 269 210 32 0 chr1 59802974 59803036 -137392396 - ID4 SINE ID -18 65 2 8 1041 1323 81 27 0 chr1 59803038 59803223 -137392209 - B2_Mm2 SINE B2 -5 190 1 8 1041 209 179 0 15 chr1 59803300 59803340 -137392092 + A-rich Low_complexity Low_complexity 2 41 0 8 1041 192 77 0 0 chr1 59803340 59803366 -137392066 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1041 209 179 0 15 chr1 59803366 59803393 -137392039 + A-rich Low_complexity Low_complexity 42 67 0 8 1041 1181 68 0 0 chr1 59803873 59804020 -137391412 + B1_Mm SINE Alu 1 147 0 8 1041 943 135 35 17 chr1 59804402 59804575 -137390857 - B2_Mm2 SINE B2 -19 176 1 8 1041 1696 26 0 0 chr1 59804584 59804776 -137390656 - B2_Mm1a SINE B2 0 193 2 8 1041 22 56 0 0 chr1 59804783 59804819 -137390613 + AT_rich Low_complexity Low_complexity 1 36 0 8 1041 426 359 18 25 chr1 59804825 59804988 -137390444 - RSINE1 SINE B4 0 165 4 8 1041 595 157 210 24 chr1 59805001 59805125 -137390307 - B1F2 SINE Alu 0 149 3 8 1041 305 205 11 108 chr1 59805133 59805226 -137390206 - L1MB8 LINE L1 -68 6110 6027 8 1041 218 321 0 0 chr1 59805293 59805347 -137390085 - PB1D10 SINE Alu -10 107 54 8 1041 1493 141 0 16 chr1 59805347 59805593 -137389839 + RMER6A LTR ERVK 1 242 -514 8 1041 259 351 31 1 chr1 59805867 59806042 -137389390 - LTR48 LTR ERV1 -159 628 383 8 1041 282 203 51 0 chr1 59806140 59806199 -137389233 + PB1D7 SINE Alu 39 100 -20 8 1041 659 143 35 70 chr1 59806207 59806332 -137389100 + B1_Mur3 SINE Alu 12 137 -12 8 1041 784 201 0 69 chr1 59806332 59806492 -137388940 + B1_Mur3 SINE Alu 1 149 0 8 1041 659 143 35 70 chr1 59806492 59806509 -137388923 + B1_Mur3 SINE Alu 138 149 0 8 1041 405 259 0 67 chr1 59806526 59806646 -137388786 + PB1 SINE Alu 1 112 -15 8 1041 1302 112 16 0 chr1 59806648 59806835 -137388597 - B2_Mm2 SINE B2 -5 190 1 8 1041 1101 29 66 0 chr1 59806851 59806988 -137388444 - B1_Mus2 SINE Alu -1 146 1 8 1041 576 0 0 0 chr1 59807005 59807069 -137388363 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1041 289 149 0 0 chr1 59807120 59807167 -137388265 + ID4 SINE ID 1 47 -36 8 1041 459 0 0 0 chr1 59807352 59807403 -137388029 + (TTA)n Simple_repeat Simple_repeat 1 51 0 8 1041 675 78 0 0 chr1 59807581 59807684 -137387748 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 8 1041 1173 82 0 0 chr1 59807684 59807830 -137387602 - B1_Mus1 SINE Alu -2 146 1 8 1041 257 0 0 29 chr1 59807961 59807995 -137387437 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1041 639 194 0 82 chr1 59807996 59808131 -137387301 - B1_Mur1 SINE Alu -14 135 12 9 1041 333 295 8 76 chr1 59808016 59808148 -137387284 - B4 SINE B4 -88 204 82 9 1041 207 198 37 12 chr1 59808297 59808352 -137387080 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 1041 198 0 0 0 chr1 59808352 59808374 -137387058 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1041 207 198 37 12 chr1 59808374 59808400 -137387032 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 1041 1449 76 16 0 chr1 59808423 59808608 -137386824 - B2_Mm2 SINE B2 -7 188 1 9 1041 189 74 0 0 chr1 59808663 59808690 -137386742 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 9 1041 383 324 28 9 chr1 59808698 59808804 -137386628 - ID_B1 SINE B4 -35 189 82 9 1041 567 309 0 20 chr1 59808908 59809060 -137386372 + B1F1 SINE Alu 1 149 0 9 1041 371 266 87 47 chr1 59809074 59809224 -137386208 + B3A SINE B2 5 160 -38 9 1041 369 0 0 0 chr1 59809228 59809269 -137386163 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1041 528 190 90 0 chr1 59810371 59810471 -137384961 + PB1D9 SINE Alu 2 110 -10 9 1041 744 136 16 31 chr1 59810731 59810860 -137384572 - B1_Mur1 SINE Alu -1 148 22 9 1041 22 35 0 0 chr1 59811146 59811175 -137384257 + AT_rich Low_complexity Low_complexity 1 29 0 9 1041 1104 103 7 0 chr1 59811175 59811321 -137384111 - B1_Mus2 SINE Alu 0 147 1 9 1041 1093 95 0 0 chr1 59811337 59811484 -137383948 - B1_Mus1 SINE Alu -1 147 1 9 1041 25 51 0 0 chr1 59811486 59811525 -137383907 + AT_rich Low_complexity Low_complexity 1 39 0 9 1041 21 57 0 0 chr1 59811575 59811610 -137383822 + AT_rich Low_complexity Low_complexity 1 35 0 9 1041 592 262 18 36 chr1 59811622 59811788 -137383644 - RSINE1 SINE B4 0 165 3 9 1041 1495 253 19 8 chr1 59812102 59812461 -137382971 - ORR1D2 LTR MaLR -5 365 3 9 1041 1439 67 0 72 chr1 59812683 59812892 -137382540 + B2_Mm2 SINE B2 1 194 -1 9 1041 1180 68 0 0 chr1 59812908 59813055 -137382377 + B1_Mus2 SINE Alu 1 147 0 9 1041 321 47 0 0 chr1 59813062 59813105 -137382327 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 9 1041 789 199 21 0 chr1 59813135 59813276 -137382156 - B1_Mur1 SINE Alu -5 144 1 9 1041 213 108 0 0 chr1 59813284 59813321 -137382111 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1041 499 285 14 7 chr1 59813337 59813475 -137381957 - RSINE1 SINE B4 -25 140 2 9 1041 1576 37 27 0 chr1 59813480 59813667 -137381765 - B2_Mm1t SINE B2 0 193 2 9 1041 183 42 0 0 chr1 59813908 59813932 -137381500 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 9 1041 1096 95 6 0 chr1 59813932 59814090 -137381342 - B2_Mm1a SINE B2 -33 160 2 9 1041 367 278 11 0 chr1 59814197 59814287 -137381145 + MLT1E1A LTR MaLR 558 648 -32 9 1041 1303 103 16 0 chr1 59814319 59814504 -137380928 - B2_Mm2 SINE B2 -7 188 1 9 1041 297 0 0 0 chr1 59814779 59814812 -137380620 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1041 1172 83 18 0 chr1 59814813 59814982 -137380450 - B2_Mm2 SINE B2 -22 173 2 9 1041 673 176 53 0 chr1 59815035 59815156 -137380276 + B1_Mus1 SINE Alu 11 138 -10 9 1041 629 58 0 11 chr1 59815156 59815243 -137380189 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 9 1041 775 251 86 34 chr1 59815259 59815585 -137379847 + RLTR15 LTR ERVK 1 343 -16 9 1041 223 218 0 22 chr1 59815700 59815759 -137379673 + RSINE1 SINE B4 1 55 -237 9 1041 850 137 38 0 chr1 59815869 59816000 -137379432 - B1_Mus1 SINE Alu -12 136 1 9 1041 1660 16 21 0 chr1 59816033 59816221 -137379211 - B2_Mm1a SINE B2 0 193 2 9 1041 27 0 0 0 chr1 59816224 59816251 -137379181 + AT_rich Low_complexity Low_complexity 1 27 0 9 1041 471 309 22 6 chr1 59816271 59816450 -137378982 - B3A SINE B2 -15 183 2 9 1041 282 56 0 0 chr1 59816536 59816572 -137378860 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1041 1269 47 130 0 chr1 59816572 59816741 -137378691 - B2_Mm1a SINE B2 -1 192 2 9 1041 513 0 0 0 chr1 59816741 59816798 -137378634 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 9 1041 219 278 222 0 chr1 59816935 59817025 -137378407 + PB1D9 SINE Alu 1 110 -10 9 1041 263 242 32 0 chr1 59817329 59817391 -137378041 + MLT1I LTR MaLR 69 132 -279 9 1041 885 182 0 0 chr1 59817438 59817586 -137377846 + B1_Mur4 SINE Alu 3 150 0 9 1041 725 42 0 0 chr1 59817673 59817769 -137377663 - B1_Mm SINE Alu 0 147 52 9 1041 301 165 17 134 chr1 59817769 59817789 -137377643 - ID_B1 SINE B4 0 221 120 9 1041 441 198 0 0 chr1 59818857 59818948 -137376484 + (TA)n Simple_repeat Simple_repeat 2 92 0 9 1041 31 0 0 0 chr1 59820196 59820227 -137375205 + GC_rich Low_complexity Low_complexity 1 31 0 9 1041 252 0 0 0 chr1 59820248 59820276 -137375156 + (CCG)n Simple_repeat Simple_repeat 2 29 0 9 1041 21 0 0 0 chr1 59820337 59820358 -137375074 + GC_rich Low_complexity Low_complexity 1 21 0 9 1041 189 0 0 0 chr1 59820583 59820604 -137374828 + (CGG)n Simple_repeat Simple_repeat 2 22 0 9 1041 189 74 0 0 chr1 59821092 59821119 -137374313 + (C)n Simple_repeat Simple_repeat 1 27 0 9 1041 381 283 73 73 chr1 59823348 59823554 -137371878 - MIRb SINE MIR -16 252 47 9 1041 494 158 31 31 chr1 59823741 59823839 -137371593 + B1_Mur4 SINE Alu 53 150 0 9 1041 353 270 59 8 chr1 59824051 59824161 -137371271 - B1F SINE Alu -8 112 6 9 1041 28 0 0 0 chr1 59824296 59824324 -137371108 + AT_rich Low_complexity Low_complexity 1 28 0 9 1041 614 114 28 28 chr1 59825244 59825352 -137370080 + B1_Mur3 SINE Alu 29 136 -13 9 1041 183 80 0 0 chr1 59825374 59825399 -137370033 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 9 1041 1621 38 0 0 chr1 59825412 59825597 -137369835 - B2_Mm1a SINE B2 -7 186 2 9 1041 247 389 0 14 chr1 59825605 59825678 -137369754 - ID4_ SINE ID -3 80 9 9 1041 3398 40 2 10 chr1 59825680 59826081 -137369351 + MTB LTR MaLR 3 400 0 9 1041 185 315 0 0 chr1 59826117 59826171 -137369261 + MIRm SINE MIR 221 274 -2 9 1041 802 240 72 15 chr1 59826188 59826383 -137369049 + B3 SINE B2 2 207 -9 9 1041 931 117 7 58 chr1 59826405 59826560 -137368872 + B1_Mus1 SINE Alu 2 148 0 9 1041 383 265 10 48 chr1 59826604 59826707 -137368725 - RSINE1 SINE B4 -35 130 32 9 1041 1100 89 7 0 chr1 59826728 59826874 -137368558 - B1_Mus1 SINE Alu 0 148 2 9 1041 302 0 26 0 chr1 59826979 59827017 -137368415 + (GTTTG)n Simple_repeat Simple_repeat 1 39 0 9 1041 231 261 43 0 chr1 59827375 59827444 -137367988 - B1F1 SINE Alu -1 148 77 9 1041 972 188 15 25 chr1 59827589 59827786 -137367646 - B3 SINE B2 -20 196 2 9 1041 333 0 0 0 chr1 59829116 59829153 -137366279 + (TA)n Simple_repeat Simple_repeat 1 37 0 9 1041 221 356 0 0 chr1 59829165 59829238 -137366194 - ID4 SINE ID 0 83 11 9 1041 21 57 0 0 chr1 59829316 59829351 -137366081 + AT_rich Low_complexity Low_complexity 1 35 0 9 1041 863 189 0 7 chr1 59829513 59829657 -137365775 + B1_Mur2 SINE Alu 2 144 -5 9 1041 315 0 0 0 chr1 59829790 59829825 -137365607 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 9 1041 407 306 9 0 chr1 59829825 59829933 -137365499 - PB1D7 SINE Alu -11 109 1 9 1041 225 146 49 0 chr1 59829995 59830036 -137365396 - ID4_ SINE ID -39 44 2 9 1041 265 276 0 0 chr1 59830050 59830126 -137365306 - L1MB7 LINE L1 -12 6172 6097 9 1041 198 0 0 0 chr1 59830152 59830174 -137365258 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1041 1224 41 0 0 chr1 59830174 59830320 -137365112 - B1_Mus2 SINE Alu 0 147 2 9 1041 1196 108 37 11 chr1 59830323 59830511 -137364921 - B2_Mm2 SINE B2 -2 193 1 9 1041 277 253 95 42 chr1 59830561 59830656 -137364776 + PB1D9 SINE Alu 20 119 -1 9 1041 218 305 51 0 chr1 59830749 59830808 -137364624 - ID_B1 SINE B4 -84 140 79 9 1041 1877 243 122 14 chr1 59831123 59831710 -137363722 - Lx8 LINE L1 -73 7400 6781 9 1041 305 226 25 136 chr1 59831966 59832084 -137363348 + MT2B LTR ERVL 155 259 -342 9 1041 761 161 0 59 chr1 59831978 59832130 -137363302 + B1_Mus1 SINE Alu 6 148 0 9 1041 214 250 13 147 chr1 59832198 59832273 -137363159 - ID4 SINE ID -3 80 16 9 1041 671 214 53 1 chr1 59832880 59833033 -137362399 - RSINE1 SINE B4 -6 159 1 9 1041 230 262 0 13 chr1 59833033 59833101 -137362331 - B4 SINE B4 -77 88 24 9 1041 198 0 0 0 chr1 59833111 59833133 -137362299 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1041 262 281 18 0 chr1 59833133 59833190 -137362242 - ID4 SINE ID -6 77 20 9 1041 260 385 43 29 chr1 59833250 59833389 -137362043 - MER5A DNA MER1_type 0 189 49 9 1041 21 36 0 0 chr1 59833448 59833476 -137361956 + AT_rich Low_complexity Low_complexity 1 28 0 9 1041 1002 175 116 5 chr1 59833560 59833750 -137361682 - B3 SINE B2 -5 211 1 9 1041 372 333 14 43 chr1 59833786 59833924 -137361508 - RSINE1 SINE B4 -29 136 3 9 1041 344 276 17 3 chr1 59834010 59834124 -137361308 + MER5A DNA MER1_type 2 119 -47 9 1041 381 267 0 34 chr1 59834257 59834346 -137361086 - ID_B1 SINE B4 -8 216 131 9 1041 25 83 0 0 chr1 59834346 59834406 -137361026 + AT_rich Low_complexity Low_complexity 1 60 0 1 1041 1441 256 145 4 chr1 59834803 59835306 -137360126 + L1MC3 LINE L1 7200 7773 -12 1 1041 352 210 148 0 chr1 59835621 59835702 -137359730 - PB1D10 SINE Alu -13 104 12 1 1041 1149 61 7 0 chr1 59835794 59835941 -137359491 - B1_Mus1 SINE Alu 0 148 1 1 1041 185 274 48 0 chr1 59835941 59836003 -137359429 + L2 LINE L2 2288 2352 -1067 1 1041 267 179 0 118 chr1 59836030 59836106 -137359326 - ID4_ SINE ID -14 69 3 1 1041 324 376 101 33 chr1 59836115 59836481 -137358951 + L2 LINE L2 2449 2839 -580 1 1041 335 264 0 0 chr1 59836566 59836638 -137358794 - B1F SINE Alu -8 141 70 1 1041 323 259 0 45 chr1 59836638 59836649 -137358783 - ID_B1 SINE B4 -2 198 138 1 1041 1161 48 7 0 chr1 59836649 59836794 -137358638 + B1_Mm SINE Alu 2 147 0 1 1041 182 62 0 30 chr1 59836796 59836829 -137358603 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1041 998 224 24 0 chr1 59836975 59837185 -137358247 - B3 SINE B2 -1 215 1 1 1041 218 275 0 104 chr1 59837278 59837355 -137358077 - ID4_ SINE ID 0 83 15 1 1041 553 186 0 34 chr1 59838424 59838541 -137356891 - B1_Mur1 SINE Alu -1 148 36 1 1041 259 274 79 70 chr1 59838453 59838567 -137356865 - MT2B LTR ERVL -323 278 164 1 1041 881 231 18 32 chr1 59838595 59838814 -137356618 + B3 SINE B2 1 216 0 1 1041 29 0 0 0 chr1 59839066 59839095 -137356337 + AT_rich Low_complexity Low_complexity 1 29 0 1 1041 722 174 0 38 chr1 59839718 59839859 -137355573 + CT-rich Low_complexity Low_complexity 43 180 0 1 1041 967 76 38 8 chr1 59839859 59839992 -137355440 - B1_Mus1 SINE Alu -10 138 2 1 1041 722 174 0 38 chr1 59839992 59840035 -137355397 + polypyrimidine Low_complexity Low_complexity 3 42 0 1 1041 226 147 0 0 chr1 59840035 59840069 -137355363 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 1 1041 181 72 45 45 chr1 59840070 59840114 -137355318 + T-rich Low_complexity Low_complexity 3 46 0 1 1041 298 312 19 142 chr1 59840114 59840125 -137355307 - MT2B LTR ERVL -351 250 236 1 1041 480 207 0 0 chr1 59840125 59840207 -137355225 - B1_Mus1 SINE Alu -66 82 1 1 1041 298 312 19 142 chr1 59840207 59840319 -137355113 - MT2B LTR ERVL -351 235 71 1 1041 400 268 103 0 chr1 59840227 59840324 -137355108 - RSINE1 SINE B4 -10 155 49 1 1041 307 261 148 0 chr1 59840637 59840725 -137354707 + PB1 SINE Alu 11 111 -16 1 1041 2137 148 36 100 chr1 59840754 59840848 -137354584 + MTC LTR MaLR 1 95 -326 1 1041 955 156 0 0 chr1 59840848 59840989 -137354443 + B1_Mur3 SINE Alu 1 141 -8 1 1041 2137 148 36 100 chr1 59840989 59841042 -137354390 + MTC LTR MaLR 96 118 -303 1 1041 1644 36 0 0 chr1 59841042 59841234 -137354198 - B2_Mm1t SINE B2 -1 192 1 1 1041 2137 148 36 100 chr1 59841234 59841535 -137353897 + MTC LTR MaLR 119 421 0 1 1041 1663 136 160 21 chr1 59841840 59841968 -137353464 + ORR1C1 LTR MaLR 1 123 -255 1 1041 315 0 0 0 chr1 59841968 59842003 -137353429 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1041 234 62 0 0 chr1 59842003 59842034 -137353398 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1041 1663 136 160 21 chr1 59842034 59842235 -137353197 + ORR1C1 LTR MaLR 124 375 -3 1 1041 189 107 0 0 chr1 59842349 59842377 -137353055 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1041 1153 88 0 0 chr1 59842377 59842525 -137352907 - B1_Mus1 SINE Alu 0 148 1 1 1041 315 49 0 0 chr1 59842578 59842619 -137352813 + (TATG)n Simple_repeat Simple_repeat 1 41 0 1 1041 452 176 94 0 chr1 59842619 59842704 -137352728 - B1_Mm SINE Alu -13 134 42 1 1041 25 65 0 0 chr1 59842712 59842758 -137352674 + AT_rich Low_complexity Low_complexity 1 46 0 1 1041 538 218 81 0 chr1 59842767 59842891 -137352541 + B1_Mur2 SINE Alu 3 136 -13 1 1041 561 55 0 0 chr1 59843107 59843180 -137352252 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 1 1041 371 218 115 0 chr1 59843182 59843269 -137352163 - BC1_Mm scRNA scRNA -54 98 2 1 1041 436 222 119 0 chr1 59843969 59844095 -137351337 - B1_Mur2 SINE Alu -7 142 2 1 1041 225 0 0 0 chr1 59844295 59844320 -137351112 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1041 1179 61 0 0 chr1 59844325 59844472 -137350960 - B1_Mus2 SINE Alu 0 147 1 1 1041 428 319 59 0 chr1 59844475 59844594 -137350838 - ID_B1 SINE B4 -2 222 97 1 1041 31 0 0 0 chr1 59844649 59844680 -137350752 + AT_rich Low_complexity Low_complexity 1 31 0 1 1041 324 245 64 0 chr1 59844680 59844774 -137350658 + L1M5 LINE L1 5333 5432 -732 1 1041 802 181 7 0 chr1 59844782 59844920 -137350512 + B1_Mus2 SINE Alu 1 139 -8 1 1041 1265 277 38 12 chr1 59844981 59845398 -137350034 + L1MA5 LINE L1 5438 5865 -435 1 1041 549 0 0 0 chr1 59845406 59845467 -137349965 + (TTTCC)n Simple_repeat Simple_repeat 1 61 0 1 1041 363 44 0 0 chr1 59845467 59845512 -137349920 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1041 414 39 0 0 chr1 59845512 59845563 -137349869 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1041 1138 54 136 12 chr1 59846932 59847101 -137348331 - B2_Mm2 SINE B2 -5 190 1 1 1041 705 24 0 0 chr1 59847257 59847340 -137348092 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1 1041 682 225 29 7 chr1 59847344 59847483 -137347949 - B1_Mur4 SINE Alu -7 143 2 1 1041 287 322 26 77 chr1 59847483 59847495 -137347937 - B4 SINE B4 -69 219 77 1 1041 1179 54 0 0 chr1 59847576 59847723 -137347709 + B1_Mm SINE Alu 1 147 0 1 1041 312 27 0 0 chr1 59847723 59847760 -137347672 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1041 304 149 57 34 chr1 59847790 59847864 -137347568 + B1_Mur2 SINE Alu 37 149 0 1 1041 615 196 67 15 chr1 59847879 59848014 -137347418 + B1_Mur2 SINE Alu 6 147 -2 1 1041 679 239 72 42 chr1 59848220 59848386 -137347046 - B3 SINE B2 -37 179 9 1 1041 861 281 88 49 chr1 59848384 59848770 -137346662 + MTE2a LTR MaLR 5 379 0 1 1041 604 305 102 37 chr1 59848825 59849070 -137346362 - MTEa LTR MaLR -118 261 1 1 1041 589 264 18 48 chr1 59849239 59849406 -137346026 - RSINE1 SINE B4 -1 164 3 1 1041 288 314 11 65 chr1 59849413 59849505 -137345927 - PB1D10 SINE Alu -10 107 21 1 1041 1236 107 17 0 chr1 59849797 59849974 -137345458 + B2_Mm2 SINE B2 2 181 -14 1 1041 406 87 6 9 chr1 59850002 59850111 -137345321 + B2_Mm2 SINE B2 47 190 -5 1 1041 400 254 3 65 chr1 59850122 59850231 -137345201 + PB1D9 SINE Alu 1 105 -44 1 1041 238 250 138 58 chr1 59850240 59850310 -137345122 + Charlie1a DNA MER1_type 1067 1137 -318 1 1041 1464 55 6 0 chr1 59850310 59850493 -137344939 - B2_Mm1a SINE B2 -5 188 5 1 1041 238 250 138 58 chr1 59850493 59850596 -137344836 + Charlie1a DNA MER1_type 1138 1254 -201 1 1041 770 208 78 59 chr1 59850619 59850823 -137344609 - B3 SINE B2 -6 210 3 1 1041 286 188 0 30 chr1 59850879 59850945 -137344487 - B3 SINE B2 -14 202 139 1 1041 248 350 16 39 chr1 59850988 59851116 -137344316 + MLT1C LTR MaLR 188 312 -155 1 1041 228 246 14 0 chr1 59851198 59851267 -137344165 - L1MA5 LINE L1 -66 6234 6165 1 1041 207 0 0 0 chr1 59851380 59851403 -137344029 + (CATA)n Simple_repeat Simple_repeat 3 25 0 1 1041 1560 48 0 5 chr1 59851436 59851625 -137343807 - B2_Mm2 SINE B2 -4 191 4 1 1041 844 115 6 86 chr1 59851627 59851789 -137343643 - B1_Mur4 SINE Alu -1 149 1 1 1041 1165 47 0 39 chr1 59851797 59851951 -137343481 - B1_Mus1 SINE Alu 0 148 1 1 1041 790 290 48 4 chr1 59852386 59852635 -137342797 - MER45B DNA Tip100 -18 1022 763 1 1041 195 42 0 0 chr1 59852695 59852719 -137342713 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1 1041 1103 56 0 7 chr1 59852719 59852864 -137342568 - B1_Mus2 SINE Alu -2 145 2 1 1041 677 246 54 49 chr1 59852990 59853195 -137342237 - B3 SINE B2 -10 206 1 1 1041 507 335 72 16 chr1 59853219 59853413 -137342019 + ID_B1 SINE B4 4 208 -16 1 1041 351 256 44 0 chr1 59853413 59853503 -137341929 - RSINE1 SINE B4 -29 136 43 1 1041 180 0 0 0 chr1 59853515 59853535 -137341897 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1041 543 322 18 42 chr1 59853561 59853778 -137341654 - MER45B DNA Tip100 -394 646 435 1 1041 748 219 73 6 chr1 59853920 59854099 -137341333 - B3 SINE B2 -1 215 25 1 1041 450 340 21 0 chr1 59854464 59854605 -137340827 - B1F SINE Alu -2 147 4 1 1041 567 281 146 0 chr1 59855243 59855531 -137339901 + L1MC4a LINE L1 6168 6497 -1385 1 1041 1124 43 0 0 chr1 59855551 59855689 -137339743 - B1_Mus2 SINE Alu -9 138 1 1 1041 726 291 93 25 chr1 59855695 59856048 -137339384 + L1MC4a LINE L1 6677 7053 -829 1 1041 25 0 0 0 chr1 59856178 59856203 -137339229 + AT_rich Low_complexity Low_complexity 1 25 0 1 1041 378 0 0 0 chr1 59856877 59856919 -137338513 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1041 233 255 0 0 chr1 59856980 59857031 -137338401 - B1F1 SINE Alu -98 51 1 1 1041 1200 181 15 0 chr1 59857110 59857314 -137338118 + B3 SINE B2 1 207 -9 1 1041 22 70 0 0 chr1 59857351 59857394 -137338038 + AT_rich Low_complexity Low_complexity 1 43 0 1 1041 1290 75 35 0 chr1 59857449 59857622 -137337810 + B2_Mm1t SINE B2 1 179 -14 1 1041 455 48 343 9 chr1 59857635 59857740 -137337692 + B2_Mm2 SINE B2 47 186 -9 1 1041 535 249 52 0 chr1 59857741 59857946 -137337486 - L1MB4 LINE L1 -131 6053 5830 1 1041 1129 261 53 32 chr1 59857948 59858233 -137337199 - B4A SINE B4 0 292 2 1 1041 417 202 225 3 chr1 59858262 59858394 -137337038 - L1MB4 LINE L1 -417 5762 5607 1 1041 834 123 64 14 chr1 59858509 59858649 -137336783 - B1_Mus1 SINE Alu 0 148 2 1 1041 1028 278 72 64 chr1 59858716 59858949 -137336483 - L1MB4 LINE L1 -1067 5079 4845 1 1041 361 308 9 0 chr1 59858949 59859056 -137336376 + PB1D10 SINE Alu 1 108 -9 1 1041 1028 278 72 64 chr1 59859056 59859460 -137335972 - L1MB4 LINE L1 -1302 4844 4437 1 1041 671 269 106 45 chr1 59859720 59859951 -137335481 + B4A SINE B4 2 250 -42 1 1041 254 294 98 0 chr1 59860024 59860126 -137335306 + L2a LINE L2 3301 3412 -14 1 1041 424 209 34 68 chr1 59860359 59860477 -137334955 + MER68 LTR ERVL 1 114 -449 1 1041 1349 143 25 110 chr1 59860477 59860759 -137334673 - RLTR18 LTR ERVK 0 616 359 1 1041 817 221 27 22 chr1 59860756 59860941 -137334491 + B3A SINE B2 13 198 0 1 1041 699 309 78 4 chr1 59860962 59861177 -137334255 + B4A SINE B4 1 232 -60 1 1041 342 0 0 0 chr1 59861177 59861215 -137334217 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1041 699 309 78 4 chr1 59861215 59861230 -137334202 + B4A SINE B4 233 248 -44 1 1041 394 261 51 17 chr1 59861574 59861691 -137333741 + B1F SINE Alu 3 123 -26 1 1041 327 283 30 30 chr1 59861691 59861702 -137333730 + ID_B1 SINE B4 84 211 -13 1 1041 300 229 100 40 chr1 59862429 59862529 -137332903 - PB1 SINE Alu -19 108 3 1 1041 494 252 17 145 chr1 59862620 59862659 -137332773 + B4 SINE B4 68 217 -75 1 1041 921 100 0 23 chr1 59862659 59862792 -137332640 + B1_Mus1 SINE Alu 10 139 -9 1 1041 300 232 22 89 chr1 59862874 59862964 -137332468 - MT2B2 LTR ERVL -334 250 167 1 1041 600 86 0 0 chr1 59862884 59862965 -137332467 - B1_Mus1 SINE Alu -66 82 2 1 1041 1427 44 0 27 chr1 59863101 59863287 -137332145 + B2_Mm2 SINE B2 1 181 -14 1 1041 285 51 0 0 chr1 59863454 59863493 -137331939 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1041 286 263 0 0 chr1 59863633 59863690 -137331742 + PB1D10 SINE Alu 59 115 -2 1 1041 765 279 0 0 chr1 59863890 59864051 -137331381 - RSINE1 SINE B4 -2 163 3 1 1041 21 0 0 0 chr1 59864280 59864301 -137331131 + AT_rich Low_complexity Low_complexity 1 21 0 1 1041 712 200 15 0 chr1 59864535 59864665 -137330767 - B1_Mur1 SINE Alu -6 143 12 1 1041 252 296 128 43 chr1 59864682 59864823 -137330609 - B4 SINE B4 -126 166 14 1 1041 192 152 0 0 chr1 59864845 59864878 -137330554 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1041 597 237 36 22 chr1 59864878 59865016 -137330416 - B1_Mus2 SINE Alu -2 145 6 1 1041 517 289 107 42 chr1 59865105 59865441 -137329991 - L1_Mur3 LINE L1 -548 5743 5386 1 1041 288 261 65 40 chr1 59865486 59865610 -137329822 - L1_Mur3 LINE L1 -1694 4186 4060 1 1041 422 263 50 43 chr1 59865610 59865749 -137329683 + B1_Mus2 SINE Alu 1 140 -7 1 1041 264 356 0 11 chr1 59865749 59865837 -137329595 + GA-rich Low_complexity Low_complexity 1 87 0 1 1041 410 202 25 0 chr1 59865852 59865931 -137329501 + RSINE1 SINE B4 4 84 -81 1 1041 213 309 78 49 chr1 59865931 59865954 -137329478 + B3 SINE B2 3 107 -109 1 1041 378 0 0 0 chr1 59865956 59865998 -137329434 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1041 993 240 76 34 chr1 59866027 59866498 -137328934 - L1_Mur3 LINE L1 -2047 4096 3580 1 1041 234 91 0 0 chr1 59867108 59867141 -137328291 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1041 3532 10 2 0 chr1 59867517 59867912 -137327520 + MTA_Mm LTR MaLR 1 396 0 1 1041 270 0 0 0 chr1 59868209 59868239 -137327193 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1041 218 182 0 0 chr1 59868240 59868252 -137327180 + T-rich Low_complexity Low_complexity 33 44 0 1 1041 1085 61 0 75 chr1 59868252 59868411 -137327021 - B1_Mus1 SINE Alu 0 148 2 1 1041 218 182 0 0 chr1 59868411 59868442 -137326990 + T-rich Low_complexity Low_complexity 2 32 0 1 1041 5769 87 31 5 chr1 59868462 59869274 -137326158 - L1Md_F2 LINE L1 -3 6579 5747 1 1041 806 190 7 0 chr1 59869276 59869418 -137326014 - B1_Mur1 SINE Alu -5 144 2 1 1041 246 98 29 116 chr1 59869455 59869483 -137325949 + T-rich Low_complexity Low_complexity 36 64 0 1 1041 525 190 53 87 chr1 59869483 59869633 -137325799 - B1_Mur2 SINE Alu 0 149 5 1 1041 246 98 29 116 chr1 59869633 59869673 -137325759 + T-rich Low_complexity Low_complexity 2 35 0 1 1041 1357 89 16 0 chr1 59869696 59869886 -137325546 - B2_Mm2 SINE B2 0 195 3 1 1041 553 217 126 88 chr1 59870039 59870185 -137325247 + B3A SINE B2 3 160 -38 1 1041 267 79 0 0 chr1 59870185 59870223 -137325209 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1041 422 217 126 88 chr1 59870223 59870258 -137325174 + B2_Mm2 SINE B2 158 191 -4 1 1041 21 36 0 0 chr1 59870276 59870304 -137325128 + AT_rich Low_complexity Low_complexity 1 28 0 1 1041 740 182 247 0 chr1 59870632 59870802 -137324630 - B3 SINE B2 -4 212 1 1 1041 234 128 0 0 chr1 59871090 59871129 -137324303 + (CTTG)n Simple_repeat Simple_repeat 1 39 0 1 1041 485 271 0 0 chr1 59871131 59871238 -137324194 - PB1D9 SINE Alu -11 109 3 1 1041 25 0 0 0 chr1 59871341 59871366 -137324066 + AT_rich Low_complexity Low_complexity 1 25 0 1 1041 23 33 0 0 chr1 59871650 59871680 -137323752 + AT_rich Low_complexity Low_complexity 1 30 0 1 1041 496 261 41 21 chr1 59872436 59872581 -137322851 + B1F SINE Alu 2 149 0 1 1041 873 142 60 0 chr1 59872628 59872762 -137322670 + B1_Mur1 SINE Alu 8 149 0 1 1041 349 339 0 18 chr1 59872840 59872954 -137322478 + PB1 SINE Alu 13 124 -3 1 1041 786 176 15 0 chr1 59872964 59873095 -137322337 + B1_Mur1 SINE Alu 8 140 -9 1 1041 248 0 31 0 chr1 59873124 59873156 -137322276 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1041 27 0 0 0 chr1 59873341 59873368 -137322064 + AT_rich Low_complexity Low_complexity 1 27 0 1 1041 1692 162 128 21 chr1 59873377 59873712 -137321720 + ORR1D1 LTR MaLR 1 371 -3 1 1041 1483 186 65 0 chr1 59873721 59873996 -137321436 + ORR1D1-int LTR MaLR 14 306 -1064 1 1041 527 57 14 0 chr1 59874055 59874125 -137321307 - ORR1A4 LTR MaLR 0 329 259 1 1041 670 125 27 29 chr1 59874125 59874255 -137321177 - ORR1A4 LTR MaLR -232 138 2 1 1041 504 310 66 0 chr1 59874287 59874484 -137320948 + L1MC4 LINE L1 6743 6952 -1090 1 1041 2899 176 56 0 chr1 59874480 59875014 -137320418 + RMER1B Other Other 503 1066 0 1 1041 241 267 19 38 chr1 59875011 59875116 -137320316 + L1MC4 LINE L1 6935 7037 -1005 1 1041 242 272 0 32 chr1 59875325 59875394 -137320038 + ID4_ SINE ID 1 67 -16 1 1041 712 249 122 0 chr1 59875462 59875651 -137319781 - B3 SINE B2 0 216 5 1 1041 836 276 91 31 chr1 59875737 59875991 -137319441 + B4A SINE B4 24 292 0 1 1041 627 235 96 48 chr1 59876066 59876254 -137319178 - B3A SINE B2 -1 197 1 1 1041 841 263 26 26 chr1 59876338 59876572 -137318860 + B4 SINE B4 59 292 0 1 1041 577 275 22 7 chr1 59876813 59876952 -137318480 + ID_B1 SINE B4 79 219 -5 1 1041 1006 237 5 23 chr1 59877044 59877264 -137318168 + B3 SINE B2 1 216 0 1 1041 422 314 33 8 chr1 59877366 59877488 -137317944 - B1F2 SINE Alu -24 125 1 1 1041 780 255 6 12 chr1 59877531 59877694 -137317738 + B3 SINE B2 52 213 -3 1 1041 345 183 0 0 chr1 59877734 59877794 -137317638 + B3 SINE B2 153 212 -4 1 1041 720 31 0 50 chr1 59877949 59878050 -137317382 - B1_Mm SINE Alu 0 147 52 1 1041 262 295 8 89 chr1 59877999 59878122 -137317310 - MT2B2 LTR ERVL -327 257 145 1 1041 22 0 0 0 chr1 59878158 59878180 -137317252 + AT_rich Low_complexity Low_complexity 1 22 0 1 1041 499 241 17 33 chr1 59878239 59878359 -137317073 - PB1D7 SINE Alu 0 120 3 1 1041 1393 183 152 34 chr1 59878639 59878967 -137316465 - ORR1B2 LTR MaLR 0 367 1 1 1041 1272 94 5 59 chr1 59879129 59879333 -137316099 + B2_Mm2 SINE B2 1 193 -2 1 1041 897 197 84 20 chr1 59879615 59879817 -137315615 + B3 SINE B2 2 216 0 1 1041 834 178 0 14 chr1 59879841 59879989 -137315443 + B1_Mur4 SINE Alu 2 147 -3 1 1041 351 0 0 0 chr1 59879993 59880032 -137315400 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1041 435 371 32 44 chr1 59880449 59880697 -137314735 - MIR SINE MIR -9 253 9 1 1041 407 265 126 110 chr1 59880765 59880897 -137314535 - MER113 DNA MER1_type -5 516 400 1 1041 574 246 216 0 chr1 59880897 59881068 -137314364 - B3 SINE B2 -6 210 3 1 1041 407 265 126 110 chr1 59881068 59881325 -137314107 - MER113 DNA MER1_type -122 399 121 1 1041 576 113 14 1 chr1 59881331 59881427 -137314005 + B1_Mur3 SINE Alu 52 149 0 1 1041 1198 49 24 0 chr1 59881441 59881605 -137313827 + (GAAA)n Simple_repeat Simple_repeat 1 168 0 1 1041 670 263 29 0 chr1 59881729 59881904 -137313528 + B3A SINE B2 1 180 -18 1 1041 21 0 0 0 chr1 59882027 59882048 -137313384 + AT_rich Low_complexity Low_complexity 1 21 0 1 1041 735 156 0 0 chr1 59882664 59882773 -137312659 + B2_Mm2 SINE B2 2 110 -85 1 1041 2633 118 204 10 chr1 59882784 59883274 -137312158 + RMER4B LTR ERVK 1 585 0 1 1041 6535 168 60 13 chr1 59883276 59884623 -137310809 - ORR1B1-int LTR MaLR 0 1509 99 1 1041 260 229 35 24 chr1 59884844 59884929 -137310503 - MLT1A1 LTR MaLR -12 396 311 1 1041 712 191 280 0 chr1 59885499 59885667 -137309765 + B3 SINE B2 1 215 -1 1 1041 545 189 184 24 chr1 59885724 59885836 -137309596 + B1_Mur2 SINE Alu 5 139 -10 1 1041 324 0 0 0 chr1 59885836 59885872 -137309560 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1041 545 189 184 24 chr1 59885872 59885884 -137309548 + B1_Mur2 SINE Alu 140 149 0 1 1041 488 196 0 87 chr1 59886319 59886442 -137308990 - B1_Mur1 SINE Alu 0 149 43 1 1041 256 217 41 55 chr1 59886675 59886748 -137308684 - MER5A DNA MER1_type -117 72 1 1 1041 226 234 55 123 chr1 59886748 59886855 -137308577 - RLTR13B1 LTR ERVK -659 234 138 1 1041 423 0 0 0 chr1 59887346 59887393 -137308039 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1041 2657 164 22 13 chr1 59887981 59888438 -137306994 - MT2A LTR ERVL -71 462 2 1 1041 283 194 111 0 chr1 59888475 59888547 -137306885 + L1MC LINE L1 5687 5766 -2116 1 1041 293 300 85 45 chr1 59889046 59889245 -137306187 - L1MB2 LINE L1 -55 6116 5910 1 1041 1038 42 34 47 chr1 59889371 59889519 -137305913 + B1_Mus2 SINE Alu 2 147 0 1 1041 252 179 0 0 chr1 59889519 59889597 -137305835 + A-rich Low_complexity Low_complexity 1 78 0 1 1041 591 154 0 9 chr1 59889604 59889715 -137305717 + B1_Mur4 SINE Alu 39 145 -5 1 1041 788 266 40 0 chr1 59889740 59889939 -137305493 + B3 SINE B2 2 208 -8 1 1041 246 275 76 11 chr1 59891086 59891178 -137304254 + B3 SINE B2 119 216 0 1 1041 242 238 49 24 chr1 59891765 59891847 -137303585 + L1M4 LINE L1 5053 5136 -1010 1 1041 1295 80 11 6 chr1 59891867 59892044 -137303388 + B2_Mm1t SINE B2 2 179 -14 1 1041 315 146 0 18 chr1 59892080 59892136 -137303296 + B2_Mm2 SINE B2 47 101 -94 1 1041 228 35 0 0 chr1 59892160 59892189 -137303243 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1041 383 272 0 104 chr1 59892195 59892209 -137303223 + MT2B LTR ERVL 155 156 -445 1 1041 621 227 18 0 chr1 59892209 59892319 -137303113 + B1_Mur2 SINE Alu 2 113 -36 1 1041 214 194 32 0 chr1 59892320 59892382 -137303050 + (TAA)n Simple_repeat Simple_repeat 3 66 0 1 1041 922 226 47 47 chr1 59892673 59892887 -137302545 - B3 SINE B2 -1 215 2 1 1041 491 301 37 22 chr1 59892972 59893108 -137302324 - ID_B1 SINE B4 -5 219 82 1 1041 23 0 0 0 chr1 59893109 59893132 -137302300 + AT_rich Low_complexity Low_complexity 1 23 0 1 1041 560 335 6 6 chr1 59893135 59893306 -137302126 + MER44B DNA MER2_type 1 170 -380 1 1041 356 88 310 26 chr1 59893303 59893419 -137302013 - B2_Mm2 SINE B2 0 195 47 1 1041 1373 62 11 0 chr1 59893485 59893661 -137301771 - B2_Mm1t SINE B2 -14 179 2 1 1041 1396 155 175 12 chr1 59893727 59894047 -137301385 + ORR1C1 LTR MaLR 1 372 -6 1 1041 564 243 94 82 chr1 59894040 59894273 -137301159 + MER44B DNA MER2_type 223 458 -92 1 1041 579 257 15 107 chr1 59894305 59894510 -137300922 - MER2 DNA MER2_type -82 263 78 1 1041 505 322 34 0 chr1 59894603 59894752 -137300680 - MER2B DNA MER2_type -173 163 10 1 1041 468 290 39 31 chr1 59894902 59895030 -137300402 - RSINE1 SINE B4 -21 144 16 1 1041 821 251 42 9 chr1 59895206 59895419 -137300013 - L1MB5 LINE L1 -67 6107 5888 1 1041 561 246 73 34 chr1 59895532 59895738 -137299694 - L1MB5 LINE L1 -488 5686 5473 1 1041 383 228 25 0 chr1 59895861 59895940 -137299492 - ID4_ SINE ID 0 83 3 1 1041 296 353 58 7 chr1 59896253 59896390 -137299042 + B4 SINE B4 80 223 -69 1 1041 433 256 139 8 chr1 59896269 59896391 -137299041 + B1_Mus1 SINE Alu 11 148 -1 1 1041 189 0 0 0 chr1 59896412 59896433 -137298999 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1041 26 30 0 0 chr1 59896443 59896476 -137298956 + AT_rich Low_complexity Low_complexity 1 33 0 1 1041 1416 78 5 15 chr1 59896569 59896764 -137298668 - B2_Mm1t SINE B2 0 193 1 1 1041 244 399 43 37 chr1 59897108 59897272 -137298160 - MIRb SINE MIR -84 184 20 1 1041 237 315 98 0 chr1 59897355 59897447 -137297985 - MIR SINE MIR -75 187 87 1 1041 335 235 111 0 chr1 59897478 59897559 -137297873 + PB1D7 SINE Alu 1 90 -30 1 1041 1694 204 30 6 chr1 59897559 59897923 -137297509 - ORR1D1 LTR MaLR 0 374 2 1 1041 639 280 7 26 chr1 59897932 59898086 -137297346 - B3A SINE B2 -23 175 25 1 1041 21 71 0 0 chr1 59898441 59898483 -137296949 + AT_rich Low_complexity Low_complexity 1 42 0 1 1041 626 237 21 49 chr1 59898507 59898649 -137296783 - RSINE1 SINE B4 -26 139 2 1 1041 314 269 37 28 chr1 59898762 59898869 -137296563 - B3A SINE B2 0 198 91 1 1041 1586 27 0 21 chr1 59898947 59899139 -137296293 - B2_Mm1t SINE B2 -4 189 2 1 1041 191 36 36 0 chr1 59899225 59899253 -137296179 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1041 863 164 178 11 chr1 59899322 59899507 -137295925 - B3 SINE B2 0 216 1 1 130 651 213 44 0 chr1 59899773 59899909 -137295523 + B1F2 SINE Alu 3 144 -5 1 1042 1160 107 0 5 chr1 59900043 59900250 -137295182 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 1 1042 495 0 0 0 chr1 59900260 59900315 -137295117 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1042 973 39 78 8 chr1 59900315 59900435 -137294997 - B1_Mm SINE Alu -13 134 5 1 1042 659 212 73 0 chr1 59900519 59900656 -137294776 + B1_Mur2 SINE Alu 3 149 0 1 1042 1374 68 0 35 chr1 59900661 59900858 -137294574 + B2_Mm2 SINE B2 1 190 -5 1 1042 23 0 0 0 chr1 59900864 59900887 -137294545 + AT_rich Low_complexity Low_complexity 1 23 0 1 1042 611 191 122 0 chr1 59900915 59901046 -137294386 + B1_Mur4 SINE Alu 3 149 -1 1 1042 254 327 9 18 chr1 59901118 59901227 -137294205 - L1MEb LINE L1 -5503 697 590 1 1042 684 281 22 0 chr1 59901290 59901468 -137293964 - B3A SINE B2 -15 183 2 1 1042 249 95 31 16 chr1 59901478 59901542 -137293890 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 1 1042 894 46 131 0 chr1 59901548 59901678 -137293754 - B1_Mm SINE Alu 0 147 1 1 1042 379 216 34 0 chr1 59901691 59901779 -137293653 - L1MEb LINE L1 -5513 581 491 1 1042 460 318 72 37 chr1 59901810 59902159 -137293273 - L1MEb LINE L1 -5703 391 31 1 1042 472 205 276 78 chr1 59902693 59902751 -137292681 - MER2 DNA MER2_type 0 345 282 1 1042 429 76 0 0 chr1 59902751 59902817 -137292615 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1042 472 205 276 78 chr1 59902817 59902975 -137292457 - MER2 DNA MER2_type -64 281 86 1 1042 267 288 25 12 chr1 59903003 59903084 -137292348 - ID4 SINE ID 0 83 2 1 1042 285 233 0 0 chr1 59903295 59903355 -137292077 - MTC LTR MaLR -8 411 352 1 1042 528 206 99 0 chr1 59903437 59903561 -137291871 - B1_Mur4 SINE Alu -14 136 1 1 1042 381 174 220 0 chr1 59903604 59903748 -137291684 - MTC LTR MaLR -203 218 1 1 1042 551 255 43 7 chr1 59904576 59904714 -137290718 + B1_Mur1 SINE Alu 1 143 -6 1 1042 286 316 60 8 chr1 59904722 59904856 -137290576 + B1F SINE Alu 2 142 -7 1 1042 265 288 0 48 chr1 59904879 59904963 -137290469 + ID4 SINE ID 1 80 -3 1 1042 180 0 0 0 chr1 59905097 59905117 -137290315 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1042 632 254 146 16 chr1 59906044 59906236 -137289196 + B4A SINE B4 1 217 -75 1 1042 342 0 0 0 chr1 59906279 59906317 -137289115 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 1042 678 200 15 0 chr1 59906317 59906447 -137288985 - B1_Mur2 SINE Alu -13 136 5 1 1042 295 171 86 62 chr1 59906448 59906529 -137288903 + B4A SINE B4 210 292 0 1 1042 1265 244 122 76 chr1 59906605 59906633 -137288799 - Lx9 LINE L1 -168 7476 7451 1 1042 633 213 55 0 chr1 59906633 59906760 -137288672 + B1_Mur2 SINE Alu 3 136 -13 1 1042 288 0 0 0 chr1 59906764 59906796 -137288636 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1042 180 0 0 0 chr1 59906796 59906815 -137288617 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1042 1265 244 122 76 chr1 59906815 59907348 -137288084 - Lx9 LINE L1 -194 7450 6884 1 1042 393 271 178 0 chr1 59907449 59907567 -137287865 + ID_B1 SINE B4 80 218 -6 1 1042 358 276 10 10 chr1 59907766 59907865 -137287567 - PB1D10 SINE Alu -18 99 1 1 1042 31 26 0 0 chr1 59908473 59908511 -137286921 + AT_rich Low_complexity Low_complexity 1 38 0 1 1042 262 273 121 0 chr1 59908511 59908610 -137286822 - PB1D10 SINE Alu -5 112 2 1 1042 762 166 126 13 chr1 59909465 59909624 -137285808 + B2_Mm2 SINE B2 1 177 -18 1 1042 23 78 0 0 chr1 59909746 59909797 -137285635 + AT_rich Low_complexity Low_complexity 1 51 0 1 1042 337 65 15 61 chr1 59909978 59909988 -137285444 + (TTTTA)n Simple_repeat Simple_repeat 1 10 0 1 1042 1195 92 38 0 chr1 59909988 59910172 -137285260 - B2_Mm2 SINE B2 -3 192 2 1 1042 337 65 15 61 chr1 59910172 59910227 -137285205 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 1 1042 214 300 0 20 chr1 59910417 59910468 -137284964 - B4 SINE B4 -237 55 6 1 1042 233 29 0 29 chr1 59910473 59910508 -137284924 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1042 264 246 15 15 chr1 59910581 59910647 -137284785 + ID4_ SINE ID 3 68 -15 1 1042 404 67 0 16 chr1 59910722 59910783 -137284649 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 1042 235 282 169 0 chr1 59910788 59910859 -137284573 + B4A SINE B4 27 109 -183 1 1042 433 207 57 88 chr1 59910937 59911096 -137284336 + L1MB3 LINE L1 6030 6183 0 1 1042 402 180 11 63 chr1 59911405 59911500 -137283932 - MTEa LTR MaLR -289 90 1 1 1042 1174 88 21 27 chr1 59911605 59911761 -137283671 + B2_Mm1a SINE B2 2 160 -33 1 1042 267 31 0 0 chr1 59911761 59911793 -137283639 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1042 1174 88 21 27 chr1 59911793 59911822 -137283610 + B2_Mm1a SINE B2 161 186 -7 1 1042 22 0 0 0 chr1 59911888 59911910 -137283522 + AT_rich Low_complexity Low_complexity 1 22 0 1 1042 1778 173 106 6 chr1 59911920 59912269 -137283163 - ORR1C2 LTR MaLR 0 384 1 1 1042 885 159 13 27 chr1 59912299 59912448 -137282984 - B1_Mur3 SINE Alu -2 147 1 1 1042 207 69 0 0 chr1 59912458 59912487 -137282945 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1042 787 211 0 40 chr1 59912611 59912759 -137282673 - B3 SINE B2 -2 214 73 1 1042 356 233 121 11 chr1 59912755 59912846 -137282586 + B3 SINE B2 116 216 0 1 1042 21 0 0 0 chr1 59912871 59912892 -137282540 + AT_rich Low_complexity Low_complexity 1 21 0 1 1042 844 292 56 8 chr1 59913476 59913742 -137281690 - B4 SINE B4 -13 279 1 1 1042 33 43 0 0 chr1 59914171 59914218 -137281214 + AT_rich Low_complexity Low_complexity 1 47 0 1 1042 861 151 167 30 chr1 59914557 59914755 -137280677 + URR1B DNA MER1_type 1 225 0 1 1042 832 282 19 5 chr1 59915030 59915237 -137280195 + ID_B1 SINE B4 14 223 -1 1 1042 627 171 120 30 chr1 59915535 59915668 -137279764 + B1_Mur4 SINE Alu 3 147 -3 1 1042 333 281 83 0 chr1 59916206 59916302 -137279130 + PB1D7 SINE Alu 3 106 -14 1 1042 271 207 35 0 chr1 59916841 59916899 -137278533 - RSINE1 SINE B4 -28 137 78 1 1042 288 200 0 0 chr1 59917128 59917213 -137278219 + T-rich Low_complexity Low_complexity 1 85 0 1 1042 406 345 0 0 chr1 59917213 59917326 -137278106 - ID_B1 SINE B4 0 224 112 1 1042 960 204 227 29 chr1 59917327 59917604 -137277828 - ORR1D1 LTR MaLR 0 374 43 1 1042 195 42 0 0 chr1 59917648 59917672 -137277760 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1042 337 336 114 32 chr1 59917685 59917931 -137277501 - L1MEd LINE L1 -1083 1424 1071 1 1042 495 279 36 0 chr1 59918237 59918377 -137277055 + RSINE1 SINE B4 4 148 -17 1 1042 200 34 0 33 chr1 59918795 59918825 -137276607 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1042 457 244 29 82 chr1 59919401 59919538 -137275894 - L1M4c LINE L1 -4644 1740 1607 1 1042 934 124 70 43 chr1 59919538 59919724 -137275708 - B2_Mm2 SINE B2 -4 191 1 1 1042 457 244 29 82 chr1 59919724 59919756 -137275676 - L1M4c LINE L1 -4778 1606 1580 1 1042 490 206 76 4 chr1 59919756 59919873 -137275559 - B1_Mur3 SINE Alu -27 122 3 1 1042 754 152 0 0 chr1 59919906 59920018 -137275414 - B3 SINE B2 -103 113 2 1 1042 284 294 0 61 chr1 59920018 59920115 -137275317 - RSINE1 SINE B4 -72 93 3 1 1042 33 0 0 0 chr1 59920327 59920360 -137275072 + AT_rich Low_complexity Low_complexity 1 33 0 1 1042 791 179 7 14 chr1 59920362 59920509 -137274923 + B1_Mus2 SINE Alu 1 146 -1 1 1042 439 281 136 12 chr1 59920961 59921130 -137274302 - B3A SINE B2 0 198 9 1 1042 235 162 6 89 chr1 59921268 59921336 -137274096 + B1_Mus2 SINE Alu 51 142 -5 1 1042 635 264 7 21 chr1 59921697 59921840 -137273592 + B1F SINE Alu 1 141 -8 1 1042 23 33 0 0 chr1 59921930 59921960 -137273472 + AT_rich Low_complexity Low_complexity 1 30 0 1 1042 964 222 14 19 chr1 59922277 59922488 -137272944 + B3 SINE B2 1 210 -6 1 1042 207 100 0 0 chr1 59922751 59922781 -137272651 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1042 1222 48 0 0 chr1 59922783 59922930 -137272502 - B1_Mus2 SINE Alu 0 147 1 1 1042 578 248 124 22 chr1 59923578 59923757 -137271675 - B3 SINE B2 -8 187 1 1 1042 326 296 45 0 chr1 59923945 59924033 -137271399 + RSINE1 SINE B4 48 139 -26 1 1042 417 144 292 18 chr1 59925885 59925998 -137269434 - B1F2 SINE Alu -3 146 3 1 1042 251 354 0 0 chr1 59926108 59926187 -137269245 + ID4 SINE ID 5 83 0 1 1042 353 252 8 90 chr1 59926372 59926494 -137268938 - PB1D10 SINE Alu -1 116 5 1 1042 608 277 33 19 chr1 59926805 59927015 -137268417 - ID_B1 SINE B4 -8 216 4 1 1042 207 284 136 0 chr1 59927653 59927741 -137267691 + L3 LINE CR1 3991 4090 -399 1 1042 421 256 50 17 chr1 59929904 59930065 -137265367 + B3 SINE B2 1 171 -24 1 1042 33 56 0 0 chr1 59930139 59930193 -137265239 + AT_rich Low_complexity Low_complexity 1 54 0 1 1042 250 304 177 44 chr1 59930209 59930412 -137265020 - MIRb SINE MIR -33 235 6 1 1042 641 118 204 62 chr1 59930965 59931127 -137264305 - B2_Mm2 SINE B2 -9 186 2 1 1042 184 287 185 0 chr1 59931870 59931978 -137263454 - L3b LINE CR1 -195 287 160 1 1042 21 36 0 0 chr1 59932055 59932083 -137263349 + AT_rich Low_complexity Low_complexity 1 28 0 1 1042 250 360 108 23 chr1 59934608 59934784 -137260648 - MIRb SINE MIR 0 268 78 1 1042 770 169 250 0 chr1 59935517 59935689 -137259743 - B3 SINE B2 -1 215 1 1 1042 468 198 55 0 chr1 59936710 59936801 -137258631 + B1_Mur4 SINE Alu 1 96 -54 1 1042 527 275 82 33 chr1 59936823 59937007 -137258425 + B3A SINE B2 1 193 -5 1 1042 1160 68 0 7 chr1 59937012 59937160 -137258272 + B1_Mus1 SINE Alu 2 148 0 1 1042 586 179 109 17 chr1 59937176 59937295 -137258137 + B1_Mus2 SINE Alu 15 144 -3 1 1042 844 150 237 0 chr1 59938069 59938242 -137257190 + B3 SINE B2 3 216 0 1 1042 21 0 0 0 chr1 59938242 59938263 -137257169 + AT_rich Low_complexity Low_complexity 1 21 0 1 1042 508 128 42 21 chr1 59938357 59938453 -137256979 + B1_Mur4 SINE Alu 53 150 0 1 1042 211 98 0 68 chr1 59938802 59938846 -137256586 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 1 1042 238 290 0 0 chr1 59939030 59939099 -137256333 + B3 SINE B2 139 207 -9 1 1042 222 333 0 17 chr1 59939150 59939208 -137256224 + ID_B1 SINE B4 80 136 -88 1 1042 265 302 148 23 chr1 59939156 59939244 -137256188 + PB1D10 SINE Alu 5 103 -14 1 1042 686 96 148 0 chr1 59939880 59939995 -137255437 - B1_Mus1 SINE Alu -7 141 10 1 1042 360 94 0 0 chr1 59940362 59940415 -137255017 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1042 23 33 0 0 chr1 59940862 59940892 -137254540 + AT_rich Low_complexity Low_complexity 1 30 0 1 1042 563 222 62 69 chr1 59940892 59941037 -137254395 - RSINE1 SINE B4 0 165 22 1 1042 440 311 14 70 chr1 59941401 59941543 -137253889 - B4A SINE B4 -157 135 2 1 1042 189 0 0 0 chr1 59941660 59941681 -137253751 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1042 633 233 38 0 chr1 59941772 59941905 -137253527 + B1_Mur3 SINE Alu 2 139 -10 1 1042 654 247 38 99 chr1 59941965 59942231 -137253201 + B4 SINE B4 24 266 -26 1 1042 294 277 106 0 chr1 59942207 59942301 -137253131 + RSINE1 SINE B4 49 152 -13 1 1042 315 0 0 0 chr1 59942351 59942386 -137253046 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1042 595 207 58 29 chr1 59943533 59943672 -137251760 + B1_Mus1 SINE Alu 6 148 0 1 1042 692 157 82 7 chr1 59944468 59944603 -137250829 - B1_Mur4 SINE Alu -1 149 5 1 1042 420 20 0 0 chr1 59944814 59944863 -137250569 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1042 1209 97 74 0 chr1 59945267 59945442 -137249990 - B2_Mm2 SINE B2 -7 188 1 1 1042 222 125 35 35 chr1 59945611 59945669 -137249763 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1 1042 743 73 0 9 chr1 59945746 59945856 -137249576 - B1_Mus2 SINE Alu 0 147 39 1 1042 202 16 0 127 chr1 59945859 59945930 -137249502 + (CCCCCG)n Simple_repeat Simple_repeat 3 64 0 1 1042 316 127 73 0 chr1 59945940 59945995 -137249437 - B1_Mus1 SINE Alu -89 59 1 1 1042 237 299 0 0 chr1 59945999 59946086 -137249346 + CT-rich Low_complexity Low_complexity 4 90 0 1 1042 1006 85 0 48 chr1 59946086 59946272 -137249160 + (TTTTC)n Simple_repeat Simple_repeat 4 180 0 1 1042 541 282 105 60 chr1 59946274 59946474 -137248958 - B4A SINE B4 -82 210 2 1 1042 830 203 0 7 chr1 59946880 59947029 -137248403 - B1_Mur1 SINE Alu -1 148 1 1 1042 220 182 36 0 chr1 59947049 59947104 -137248328 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 1 1042 1204 68 0 0 chr1 59947140 59947287 -137248145 + B1_Mus1 SINE Alu 2 148 0 1 1042 695 267 42 16 chr1 59947290 59947480 -137247952 - B3 SINE B2 -21 195 1 1 1042 23 0 0 0 chr1 59947493 59947516 -137247916 + AT_rich Low_complexity Low_complexity 1 23 0 1 1042 889 148 7 7 chr1 59947527 59947670 -137247762 + B1_Mur4 SINE Alu 7 149 -1 1 1042 293 155 0 17 chr1 59947691 59947750 -137247682 + (TTA)n Simple_repeat Simple_repeat 2 59 0 1 1042 262 158 119 128 chr1 59947832 59947941 -137247491 - L1MD LINE L1 -916 5443 5336 1 1042 674 284 57 5 chr1 59947943 59948155 -137247277 - ID_B1 SINE B4 0 224 2 1 1042 319 242 0 108 chr1 59948161 59948300 -137247132 - PB1 SINE Alu -3 124 1 1 1042 283 256 26 0 chr1 59948317 59948395 -137247037 - ID4_ SINE ID 0 83 4 1 1042 240 250 50 111 chr1 59948415 59948514 -137246918 - L1MB3 LINE L1 -62 6121 6029 1 1042 1135 59 0 0 chr1 59948656 59948791 -137246641 + B1_Mm SINE Alu 1 135 -12 1 1042 279 257 27 0 chr1 59949047 59949121 -137246311 - MLT1B LTR MaLR -5 385 310 1 1042 285 204 21 29 chr1 59949147 59949226 -137246206 - ID SINE ID -217 75 2 1 1042 2062 129 67 9 chr1 59949229 59949574 -137245858 - ORR1B2 LTR MaLR 0 367 3 1 1042 336 179 14 0 chr1 59949627 59949692 -137245740 - B2_Mm2 SINE B2 -82 116 46 1 1042 1196 120 11 0 chr1 59949758 59949933 -137245499 - B2_Mm1t SINE B2 -16 177 1 1 1042 258 230 123 1 chr1 59950006 59950089 -137245343 + MTC LTR MaLR 327 421 0 1 1042 460 254 18 0 chr1 59950089 59950199 -137245233 - RSINE1 SINE B4 -51 114 3 1 1042 538 244 65 0 chr1 59950232 59950355 -137245077 + B1_Mur2 SINE Alu 14 144 -5 1 1042 229 322 10 72 chr1 59951778 59951875 -137243557 - RSINE1 SINE B4 -71 94 4 1 1042 2068 104 21 62 chr1 59952708 59953047 -137242385 - ORR1A4 LTR MaLR 0 329 5 1 1042 197 65 32 0 chr1 59953415 59953446 -137241986 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1042 648 159 80 36 chr1 59953452 59953589 -137241843 - B1_Mus1 SINE Alu -1 147 5 1 1042 226 252 123 138 chr1 59953467 59953605 -137241827 - B4 SINE B4 -77 215 80 1 1042 324 0 0 0 chr1 59953794 59953830 -137241602 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1042 554 293 0 0 chr1 59954531 59954654 -137240778 + ID_B1 SINE B4 82 204 -20 1 1042 968 19 63 0 chr1 59954689 59954848 -137240584 + (CA)n Simple_repeat Simple_repeat 1 169 0 1 1042 989 32 45 0 chr1 59954887 59955041 -137240391 + (CA)n Simple_repeat Simple_repeat 1 161 0 1 1042 413 267 0 54 chr1 59955276 59955387 -137240045 - B1F SINE Alu -13 136 32 1 1042 648 294 0 13 chr1 59955599 59955754 -137239678 + RSINE1 SINE B4 1 153 -12 1 1042 395 63 0 16 chr1 59955754 59955818 -137239614 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1042 218 309 92 61 chr1 59955843 59955974 -137239458 + ID_B1 SINE B4 88 222 -2 1 1042 714 149 56 14 chr1 59957029 59957172 -137238260 + B1_Mur3 SINE Alu 1 149 0 1 1042 214 195 0 0 chr1 59957173 59957214 -137238218 + A-rich Low_complexity Low_complexity 1 41 0 1 1042 488 43 29 0 chr1 59957496 59957566 -137237866 + (CAGAGA)n Simple_repeat Simple_repeat 1 72 0 1 1042 434 253 11 0 chr1 59957880 59957975 -137237457 + RSINE1 SINE B4 2 97 -68 1 1042 323 239 223 47 chr1 59958033 59958217 -137237215 + L1MB2 LINE L1 5898 6121 -50 1 1042 353 238 0 24 chr1 59958217 59958299 -137237133 - ID4 SINE ID -2 81 2 1 1042 323 239 223 47 chr1 59958299 59958347 -137237085 + L1MB2 LINE L1 6122 6170 -1 1 1042 682 289 48 79 chr1 59958707 59959023 -137236409 - MTE2b LTR MaLR -54 325 20 1 1042 288 0 0 0 chr1 59959274 59959306 -137236126 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1042 357 318 138 18 chr1 59959357 59959690 -137235742 + HAL1 LINE L1 1425 1797 -710 1 1042 364 304 122 18 chr1 59959916 59960080 -137235352 - B3A SINE B2 -17 181 1 1 1042 307 275 0 0 chr1 59960183 59960263 -137235169 - B3A SINE B2 -81 117 38 1 1042 1311 84 17 6 chr1 59960266 59960445 -137234987 + B2_Mm2 SINE B2 1 181 -14 1 1042 413 62 0 0 chr1 59960480 59960545 -137234887 + B2_Mm1a SINE B2 127 191 -2 1 1042 1254 41 0 0 chr1 59960545 59960692 -137234740 + B1_Mm SINE Alu 1 147 0 1 1042 255 159 0 0 chr1 59960718 59960762 -137234670 - B3A SINE B2 -153 45 2 1 1042 1868 130 26 0 chr1 59961193 59961501 -137233931 + Lx2A1 LINE L1 6692 7007 -1 1 1042 207 0 0 0 chr1 59962024 59962047 -137233385 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1042 794 170 0 29 chr1 59962048 59962187 -137233245 - B1_Mus1 SINE Alu -12 136 2 1 1042 431 152 97 39 chr1 59962544 59962647 -137232785 + B1_Mur3 SINE Alu 40 148 -1 1 1042 229 228 0 0 chr1 59962876 59962933 -137232499 + B1F1 SINE Alu 1 57 -92 1 1042 309 308 188 23 chr1 59962946 59963122 -137232310 + B4A SINE B4 3 207 -85 1 1042 442 185 12 0 chr1 59963265 59963346 -137232086 + B1F SINE Alu 68 149 0 1 1042 236 292 10 119 chr1 59963272 59963373 -137232059 + B4 SINE B4 164 253 -39 1 1042 199 348 78 12 chr1 59963963 59964129 -137231303 - L2b LINE L2 -269 3106 2930 1 1042 298 279 12 25 chr1 59964221 59964302 -137231130 - ID4_ SINE ID -3 80 1 1 1042 276 213 0 0 chr1 59964307 59964368 -137231064 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1042 319 315 92 87 chr1 59964443 59964487 -137230945 + B4 SINE B4 41 223 -67 1 1042 645 200 65 22 chr1 59964487 59964625 -137230807 + B1_Mur2 SINE Alu 6 149 0 1 1042 1307 80 15 88 chr1 59965107 59965312 -137230120 - B2_Mm2 SINE B2 -1 194 5 1 1042 1182 47 0 26 chr1 59965436 59965588 -137229844 + B1_Mus1 SINE Alu 1 148 0 1 1042 216 122 0 0 chr1 59965589 59965630 -137229802 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1042 204 40 0 0 chr1 59965736 59965761 -137229671 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 1042 834 179 0 0 chr1 59965763 59965903 -137229529 - B1_Mur4 SINE Alu -8 142 3 1 1042 441 0 0 0 chr1 59966073 59966122 -137229310 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1042 1270 111 28 0 chr1 59966235 59966416 -137229016 + B2_Mm1t SINE B2 2 187 -6 1 1042 430 232 60 59 chr1 59966447 59966611 -137228821 + B3 SINE B2 45 212 -4 1 1042 1075 64 57 0 chr1 59967038 59967178 -137228254 + B1_Mus1 SINE Alu 1 148 0 1 1042 346 104 31 20 chr1 59967186 59967284 -137228148 + A-rich Low_complexity Low_complexity 2 100 0 1 1042 189 0 0 0 chr1 59967501 59967522 -137227910 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1042 495 0 0 0 chr1 59967641 59967696 -137227736 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1042 1148 19 45 0 chr1 59967700 59967856 -137227576 - B2_Mm2 SINE B2 -31 164 2 1 1042 433 262 0 46 chr1 59967871 59967979 -137227453 + ID_B1 SINE B4 119 221 -3 1 1042 243 0 0 0 chr1 59968278 59968305 -137227127 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1 1042 241 268 171 0 chr1 59968785 59968867 -137226565 + RSINE1 SINE B4 41 136 -29 1 1042 365 39 0 19 chr1 59968888 59968940 -137226492 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 1 1042 222 246 0 0 chr1 59969514 59969575 -137225857 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1042 28 61 0 0 chr1 59970041 59970090 -137225342 + GC_rich Low_complexity Low_complexity 1 49 0 1 1042 314 265 14 22 chr1 59970165 59970304 -137225128 + (CGG)n Simple_repeat Simple_repeat 3 140 0 1 1042 240 35 0 0 chr1 59970647 59970676 -137224756 + (CGGGG)n Simple_repeat Simple_repeat 4 32 0 1 1042 501 113 155 0 chr1 59971173 59971270 -137224162 - B1_Mur1 SINE Alu -21 128 17 1 1042 285 264 144 45 chr1 59971188 59971299 -137224133 - B4 SINE B4 -94 198 77 1 1042 463 225 152 23 chr1 59971311 59971443 -137223989 - B1_Mur1 SINE Alu 0 149 1 1 1042 1070 36 35 28 chr1 59972078 59972222 -137223210 - B1_Mus1 SINE Alu 0 148 4 1 1042 180 273 0 0 chr1 59972758 59972802 -137222630 - L4 LINE RTE -1262 767 724 1 1042 386 338 27 27 chr1 59973244 59973393 -137222039 - RSINE1 SINE B4 -15 150 2 1 1042 1388 79 0 41 chr1 59973393 59973411 -137222021 - B2_Mm1a SINE B2 -3 190 175 1 1042 255 31 0 0 chr1 59973411 59973443 -137221989 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 1042 1388 79 0 41 chr1 59973443 59973621 -137221811 - B2_Mm1a SINE B2 -19 174 2 1 1042 1155 61 36 6 chr1 59973626 59973791 -137221641 - B2_Mm2 SINE B2 -25 170 1 1 1042 555 310 19 25 chr1 59973950 59974109 -137221323 - RSINE1 SINE B4 -2 163 6 1 1042 23 0 0 0 chr1 59974109 59974132 -137221300 + AT_rich Low_complexity Low_complexity 1 23 0 1 1042 1849 230 103 60 chr1 59974174 59974835 -137220597 - Tigger2b DNA MER2_type -21 705 17 1 1042 694 250 70 26 chr1 59974879 59975109 -137220323 + MER21B LTR ERV1 412 651 -212 1 1042 482 312 127 44 chr1 59975115 59975430 -137220002 + ORR1E LTR MaLR 9 349 -10 1 1042 548 264 87 42 chr1 59975817 59976014 -137219418 - B3A SINE B2 -7 188 2 1 1042 1243 98 16 0 chr1 59976172 59976356 -137219076 - B2_Mm2 SINE B2 -2 193 7 1 1042 241 302 11 44 chr1 59976954 59977044 -137218388 + MIR SINE MIR 15 101 -161 1 1042 417 234 169 0 chr1 59977118 59977242 -137218190 + B1_Mur3 SINE Alu 3 147 -2 1 1042 1303 92 16 0 chr1 59977345 59977530 -137217902 - B2_Mm1t SINE B2 -5 188 1 1 1042 335 250 82 18 chr1 59978101 59978211 -137217221 - PB1D10 SINE Alu 0 117 1 1 1042 225 0 0 0 chr1 59978510 59978535 -137216897 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1042 369 278 9 18 chr1 59978551 59978661 -137216771 - MTEa LTR MaLR -68 311 203 1 1042 616 276 40 50 chr1 59978677 59978879 -137216553 - MTEa LTR MaLR -162 217 18 1 1042 1688 274 128 53 chr1 59978890 59979587 -137215845 - MTEa-int LTR MaLR -2 1578 830 1 1042 1328 247 40 24 chr1 59979706 59980079 -137215353 - MTEa LTR MaLR 0 379 1 1 1042 927 136 64 0 chr1 59980401 59980541 -137214891 - B1_Mur4 SINE Alu 0 150 2 1 1042 314 316 74 5 chr1 59980864 59981080 -137214352 - HAL1 LINE L1 -344 2163 1933 1 1042 1232 205 27 153 chr1 59981089 59981532 -137213900 - ORR1B1 LTR MaLR -2 392 6 1 1042 257 250 41 14 chr1 59981544 59981617 -137213815 - HAL1 LINE L1 -617 1890 1816 1 1042 589 237 8 0 chr1 59981662 59981780 -137213652 - ID_B1 SINE B4 -104 120 2 1 1042 1264 99 11 27 chr1 59981857 59982044 -137213388 - B2_Mm1t SINE B2 -8 185 2 1 1042 772 50 0 0 chr1 59982497 59982598 -137212834 - B2_Mm2 SINE B2 -94 101 1 1 1042 2086 135 14 17 chr1 59982598 59982951 -137212481 - ORR1B1 LTR MaLR -42 352 1 1 1042 2136 197 19 158 chr1 59982951 59983590 -137211842 - RMER1A Other Other -474 556 7 1 1042 1214 284 112 36 chr1 59983594 59984033 -137211399 - RMER1B Other Other -564 502 31 1 1042 692 257 89 9 chr1 59984450 59984726 -137210706 - L1MA4 LINE L1 -388 5912 5636 1 1042 1101 160 27 0 chr1 59984959 59985147 -137210285 - B2_Mm2 SINE B2 -1 194 2 1 1042 1427 186 83 6 chr1 59985207 59985531 -137209901 - MTC LTR MaLR -72 349 1 1 1042 561 158 105 0 chr1 59985627 59985741 -137209691 + B1_Mus2 SINE Alu 22 147 0 1 1042 294 29 0 0 chr1 59985778 59985813 -137209619 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1042 333 0 0 0 chr1 59985813 59985849 -137209583 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1042 581 237 69 23 chr1 59985937 59986110 -137209322 + B3A SINE B2 3 183 -15 1 1042 247 293 0 0 chr1 59986113 59986212 -137209220 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1042 665 279 6 6 chr1 59986382 59986541 -137208891 + RSINE1 SINE B4 1 159 -6 1 1042 661 214 62 28 chr1 59986568 59986712 -137208720 - B1_Mur2 SINE Alu 0 149 1 1 1042 526 252 76 0 chr1 59987073 59987204 -137208228 + B1_Mus1 SINE Alu 7 147 -1 1 1042 300 111 0 0 chr1 59987204 59987249 -137208183 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 1 1042 397 264 59 85 chr1 59987257 59987274 -137208158 + B4 SINE B4 70 218 -74 1 1042 818 154 0 0 chr1 59987274 59987410 -137208022 + B1_Mur3 SINE Alu 6 141 -8 1 1042 237 278 83 0 chr1 59987917 59987989 -137207443 - PB1D10 SINE Alu -20 97 20 1 1042 1347 75 32 0 chr1 59988166 59988353 -137207079 - B2_Mm1t SINE B2 0 193 1 1 1042 697 311 76 18 chr1 59988961 59989236 -137206196 - MTE-int LTR MaLR -931 649 359 1 1042 290 282 72 146 chr1 59989411 59989667 -137205765 - B4 SINE B4 -7 285 57 1 1042 284 281 135 67 chr1 59989654 59989826 -137205606 + ID_B1 SINE B4 50 224 0 1 1042 543 228 119 13 chr1 59989906 59990057 -137205375 + MTC LTR MaLR 12 178 -243 1 1042 1423 163 27 60 chr1 59990100 59990432 -137205000 - ORR1A4 LTR MaLR -8 321 1 1 1042 483 256 27 2 chr1 59990770 59990905 -137204527 - ID_B1 SINE B4 -24 200 67 1 1042 183 281 191 0 chr1 59991273 59991362 -137204070 + L2b LINE L2 3018 3123 -252 1 1042 654 267 27 0 chr1 59991522 59991668 -137203764 - RSINE1 SINE B4 -13 152 3 1 1042 270 0 0 0 chr1 59991784 59991814 -137203618 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1042 551 210 89 0 chr1 59991816 59991940 -137203492 - B1_Mus2 SINE Alu -12 135 1 1 1042 534 259 7 47 chr1 59992138 59992288 -137203144 - B4 SINE B4 -147 145 2 1 1042 486 294 38 72 chr1 59992413 59992586 -137202846 - B4A SINE B4 -65 227 56 1 1042 759 52 0 0 chr1 59992595 59992691 -137202741 + (TTTCC)n Simple_repeat Simple_repeat 4 99 0 1 1042 847 108 114 8 chr1 59992691 59992812 -137202620 - B1_Mus2 SINE Alu -10 137 3 1 1042 486 294 38 72 chr1 59992812 59992873 -137202559 - B4A SINE B4 -237 55 1 1 1042 439 272 132 6 chr1 59992897 59993010 -137202422 - MTEa LTR MaLR -49 330 210 1 1042 294 29 0 0 chr1 59993010 59993045 -137202387 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1042 439 272 132 6 chr1 59993045 59993090 -137202342 - MTEa LTR MaLR -170 209 154 1 1042 422 243 182 17 chr1 59993287 59993468 -137201964 - B3A SINE B2 -3 213 9 1 1042 331 236 115 62 chr1 59993488 59993601 -137201831 - RSINE1 SINE B4 -19 146 28 1 1042 332 200 0 28 chr1 59993631 59993703 -137201729 + B1F SINE Alu 75 144 -5 1 1042 222 296 0 0 chr1 59993847 59993918 -137201514 + T-rich Low_complexity Low_complexity 1 71 0 1 1042 304 180 0 0 chr1 59994248 59994298 -137201134 - B3 SINE B2 -164 52 3 1 1042 581 145 248 33 chr1 59994871 59994992 -137200440 + B1_Mus1 SINE Alu 2 148 0 1 1042 392 163 56 44 chr1 59995374 59995464 -137199968 + PB1D10 SINE Alu 3 93 -24 1 1042 351 263 62 10 chr1 59995505 59995601 -137199831 + B1F1 SINE Alu 27 127 -22 1 1042 315 0 0 0 chr1 59995662 59995697 -137199735 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1042 957 70 78 0 chr1 59995697 59995825 -137199607 - B1_Mm SINE Alu -9 138 1 1 1042 255 163 82 0 chr1 59996063 59996112 -137199320 - Lx8 LINE L1 -6 7467 7415 1 1042 269 260 0 0 chr1 59996113 59996163 -137199269 - Lx8 LINE L1 -406 7067 7018 1 1042 222 62 0 0 chr1 59996197 59996229 -137199203 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1042 315 105 0 0 chr1 59996229 59996286 -137199146 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1042 505 250 10 0 chr1 59996288 59996392 -137199040 - Lx8 LINE L1 -787 6686 6582 1 1042 4924 222 96 17 chr1 59996477 59997684 -137197748 + Lx7 LINE L1 6090 7392 -304 1 1042 795 136 0 22 chr1 59997729 59997864 -137197568 - B1_Mus2 SINE Alu -15 132 1 1 1042 331 225 110 21 chr1 59997891 59998036 -137197396 + Lx7 LINE L1 7539 7696 0 1 1042 281 233 65 65 chr1 59998055 59998147 -137197285 - RSINE1 SINE B4 -39 126 35 1 1042 495 266 5 168 chr1 59998184 59998315 -137197117 - MTD LTR MaLR -240 179 72 1 1042 677 194 57 14 chr1 59998315 59998456 -137196976 - B1_Mur2 SINE Alu 0 149 3 1 1042 495 266 5 168 chr1 59998456 59998527 -137196905 - MTD LTR MaLR -348 71 10 1 1042 181 258 129 0 chr1 59998557 59998619 -137196813 + MIRb SINE MIR 176 245 -23 1 1042 782 133 8 23 chr1 60000012 60000143 -137195289 - B2_Mm2 SINE B2 -66 129 1 1 1042 758 113 105 14 chr1 60000173 60000316 -137195116 - MTC LTR MaLR -265 156 1 2 1042 613 230 22 7 chr1 60000428 60000564 -137194868 - RSINE1 SINE B4 -22 143 6 3 1042 342 264 100 66 chr1 60000699 60000984 -137194448 - ORR1E LTR MaLR -2 377 55 4 1042 760 274 78 12 chr1 60001038 60001282 -137194150 - Cheshire DNA MER1_type -2078 342 83 5 1042 439 92 27 45 chr1 60001462 60001556 -137193876 + B1_Mus2 SINE Alu 31 147 0 6 1042 238 229 0 0 chr1 60001753 60001801 -137193631 - B4A SINE B4 -3 289 242 7 1042 210 275 0 138 chr1 60001848 60001928 -137193504 - MER5A DNA MER1_type -57 132 64 8 1042 453 236 26 52 chr1 60002883 60002999 -137192433 - RSINE1 SINE B4 -50 115 3 9 1042 351 0 0 0 chr1 60003183 60003222 -137192210 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1042 879 88 80 0 chr1 60003223 60003348 -137192084 - B1_Mus2 SINE Alu -12 135 1 1 1042 22 0 0 0 chr1 60003376 60003398 -137192034 + AT_rich Low_complexity Low_complexity 1 22 0 1 1042 532 241 21 28 chr1 60003437 60003578 -137191854 - B1_Mur1 SINE Alu -1 148 9 1 1042 287 246 0 58 chr1 60003660 60003729 -137191703 - ID4 SINE ID -18 65 1 1 1042 423 351 0 38 chr1 60003784 60003941 -137191491 - RSINE1 SINE B4 -6 159 9 1 1042 5147 112 31 26 chr1 60003942 60004773 -137190659 + Lx2 LINE L1 6163 6997 0 1 1042 3530 23 4 136 chr1 60004862 60005364 -137190068 - RLTR10C LTR ERVK 0 436 1 1 1042 252 0 0 0 chr1 60005496 60005524 -137189908 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1042 1215 35 0 0 chr1 60005524 60005666 -137189766 - B1_Mus2 SINE Alu -4 143 2 1 1042 181 287 76 56 chr1 60006069 60006213 -137189219 + MER5B DNA MER1_type 7 153 -25 2 1042 23 0 0 0 chr1 60006695 60006718 -137188714 + AT_rich Low_complexity Low_complexity 1 23 0 2 1042 263 226 49 131 chr1 60006720 60006736 -137188696 + MT2B LTR ERVL 153 158 -443 2 1042 797 164 43 0 chr1 60006736 60006876 -137188556 + B1_Mus2 SINE Alu 1 146 -1 2 1042 1319 79 31 11 chr1 60007736 60007927 -137187505 - L1_Mus2 LINE L1 0 6566 6372 2 1042 609 159 40 80 chr1 60008635 60008785 -137186647 - B1_Mus2 SINE Alu 0 147 4 2 1042 30 27 0 0 chr1 60008786 60008823 -137186609 + AT_rich Low_complexity Low_complexity 1 37 0 2 1042 208 135 0 0 chr1 60008909 60008946 -137186486 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1042 454 219 362 7 chr1 60009493 60009645 -137185787 + B3 SINE B2 4 209 -7 2 1042 365 273 157 65 chr1 60010004 60010157 -137185275 - B4A SINE B4 0 292 126 2 1042 265 270 16 0 chr1 60010558 60010621 -137184811 - B4A SINE B4 -211 81 18 2 1042 299 315 79 53 chr1 60010708 60010822 -137184610 + PB1D10 SINE Alu 1 117 0 3 1042 12514 63 2 2 chr1 60010941 60012511 -137182921 + L1Md_F2 LINE L1 4017 5586 -297 3 1042 8252 43 1 1 chr1 60012512 60013495 -137181937 + L1Md_F2 LINE L1 5588 6570 -12 3 1042 24 0 0 0 chr1 60013495 60013519 -137181913 + AT_rich Low_complexity Low_complexity 1 24 0 3 1042 289 286 52 0 chr1 60013701 60013778 -137181654 + PB1D9 SINE Alu 1 81 -39 3 1042 917 218 75 9 chr1 60013786 60013999 -137181433 + ORR1D2 LTR MaLR 5 231 -139 3 1042 391 208 27 45 chr1 60014334 60014445 -137180987 + ORR1D2 LTR MaLR 262 370 0 3 1042 796 210 162 10 chr1 60014539 60014841 -137180591 - ORR1E LTR MaLR -14 405 9 3 1042 321 263 65 5 chr1 60015475 60015578 -137179854 - B1_Mur2 SINE Alu -5 144 40 3 1042 357 256 13 0 chr1 60015865 60015943 -137179489 - B1_Mus2 SINE Alu -68 79 1 3 1042 838 136 71 7 chr1 60016024 60016165 -137179267 - B1_Mur4 SINE Alu 0 150 1 3 1042 322 264 153 9 chr1 60016207 60016318 -137179114 + RSINE1 SINE B4 9 135 -30 3 1042 384 59 0 0 chr1 60016323 60016374 -137179058 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1042 332 133 50 0 chr1 60016402 60016462 -137178970 - MurSatRep1 Unknown Unknown -1865 272 210 4 1042 207 297 31 0 chr1 60016891 60016955 -137178477 - L2c LINE L2 -228 3159 3094 4 1042 223 306 156 14 chr1 60017343 60017555 -137177877 - MIR SINE MIR -19 243 2 4 1042 1084 308 93 51 chr1 60017694 60018327 -137177105 + Lx8 LINE L1 6814 7473 0 4 1042 261 0 0 0 chr1 60018456 60018485 -137176947 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1042 23 0 0 0 chr1 60018573 60018596 -137176836 + AT_rich Low_complexity Low_complexity 1 23 0 4 1042 224 30 0 29 chr1 60019404 60019438 -137175994 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1042 390 300 61 8 chr1 60019438 60019569 -137175863 - B1F SINE Alu -11 138 1 4 1042 304 202 114 0 chr1 60019578 60019657 -137175775 + MER74B LTR ERVL 68 155 -467 4 1042 3453 118 37 112 chr1 60020092 60020849 -137174583 - RMER6A LTR ERVK 0 756 57 5 1042 387 277 1 1 chr1 60020862 60020969 -137174463 - ORR1D1 LTR MaLR -277 107 1 5 1042 2109 108 66 20 chr1 60021449 60022080 -137173352 + RMER17A LTR ERVK 1 748 -3 5 1042 3283 38 10 0 chr1 60022346 60022738 -137172694 - MTA_Mm LTR MaLR 0 396 1 5 1042 888 190 46 41 chr1 60023384 60023581 -137171851 + B3A SINE B2 1 198 0 5 1042 240 111 0 0 chr1 60023793 60023829 -137171603 + B3A SINE B2 3 38 -160 5 1042 228 348 101 0 chr1 60024037 60024126 -137171306 + PB1D10 SINE Alu 6 103 -14 5 1042 870 206 85 0 chr1 60024224 60024423 -137171009 + B3 SINE B2 1 216 0 5 1042 28 29 0 0 chr1 60024429 60024464 -137170968 + AT_rich Low_complexity Low_complexity 1 35 0 5 1042 1026 73 47 0 chr1 60024543 60024693 -137170739 + B2_Mm2 SINE B2 38 194 -1 5 1042 23 0 0 0 chr1 60025263 60025286 -137170146 + AT_rich Low_complexity Low_complexity 1 23 0 6 1042 222 293 70 47 chr1 60025484 60025570 -137169862 - RSINE1 SINE B4 -77 88 1 6 1042 225 198 242 30 chr1 60026451 60026550 -137168882 + PB1D9 SINE Alu 1 120 0 6 1042 519 239 9 0 chr1 60027105 60027214 -137168218 - PB1D10 SINE Alu -7 110 1 6 1042 501 171 160 15 chr1 60027806 60027937 -137167495 - URR1A DNA MER1_type 0 226 77 6 1042 475 262 117 84 chr1 60028174 60028353 -137167079 + B3A SINE B2 3 187 -11 6 1042 277 309 176 21 chr1 60028767 60028909 -137166523 + B4A SINE B4 55 218 -74 6 1042 436 296 62 21 chr1 60028912 60029057 -137166375 + RSINE1 SINE B4 8 158 -7 6 1042 1230 54 0 0 chr1 60029095 60029242 -137166190 + B1_Mus2 SINE Alu 1 147 0 6 1042 234 0 0 0 chr1 60029242 60029268 -137166164 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1042 375 167 103 0 chr1 60029268 60029346 -137166086 + PB1D9 SINE Alu 27 112 -8 7 1042 265 383 0 0 chr1 60029471 60029552 -137165880 + B4A SINE B4 1 81 -211 7 1042 1344 272 118 30 chr1 60029582 60029935 -137165497 - RCHARR1 DNA MER1_type -233 741 372 7 1042 644 191 188 99 chr1 60029935 60030044 -137165388 - B3 SINE B2 -7 209 77 7 1042 1061 137 27 16 chr1 60030044 60030230 -137165202 - B2_Mm2 SINE B2 -7 188 1 7 1042 644 191 188 99 chr1 60030230 60030312 -137165120 - B3 SINE B2 -140 76 1 7 1042 1344 272 118 30 chr1 60030312 60030637 -137164795 - RCHARR1 DNA MER1_type -603 371 4 7 1042 408 225 231 8 chr1 60030638 60030759 -137164673 + ID_B1 SINE B4 76 223 -1 7 1043 270 0 0 0 chr1 60032085 60032115 -137163317 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1043 441 0 0 0 chr1 60032115 60032163 -137163269 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1043 327 200 61 24 chr1 60032182 60032264 -137163168 - RSINE1 SINE B4 -39 126 42 7 1043 222 333 11 69 chr1 60032531 60032618 -137162814 - ID SINE ID -142 82 1 7 1043 482 218 189 58 chr1 60032635 60032825 -137162607 - B3 SINE B2 -1 215 1 8 1043 295 275 12 0 chr1 60033101 60033181 -137162251 - ID4 SINE ID -2 81 1 8 1043 594 193 0 9 chr1 60033234 60033344 -137162088 - PB1D9 SINE Alu -5 115 7 8 1043 292 312 121 21 chr1 60033736 60033877 -137161555 + MER5A DNA MER1_type 35 189 0 8 1043 1645 179 104 25 chr1 60033887 60034243 -137161189 - ORR1C2 LTR MaLR 0 384 1 8 1043 1242 93 71 0 chr1 60034304 60034329 -137161103 - B2_Mm2 SINE B2 0 195 171 8 1043 306 125 0 0 chr1 60034329 60034377 -137161055 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 8 1043 1242 93 71 0 chr1 60034377 60034533 -137160899 - B2_Mm2 SINE B2 -25 170 2 8 1043 180 0 0 0 chr1 60034786 60034806 -137160626 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1043 305 80 112 62 chr1 60034951 60035031 -137160401 - Lx9 LINE L1 0 7644 7561 8 1043 913 204 158 13 chr1 60035036 60035264 -137160168 - Lx9 LINE L1 -161 7483 7223 8 1043 343 240 95 60 chr1 60035298 60035508 -137159924 - L1_Mur2 LINE L1 -709 5591 5336 9 1043 180 111 0 0 chr1 60035532 60035559 -137159873 + (TTC)n Simple_repeat Simple_repeat 2 28 0 9 1043 583 259 63 0 chr1 60035724 60035867 -137159565 + ID_B1 SINE B4 6 157 -67 9 1043 238 220 74 42 chr1 60036369 60036464 -137158968 - Charlie4a DNA MER1_type -40 468 371 9 1043 440 295 54 0 chr1 60036652 60036781 -137158651 - RSINE1 SINE B4 -7 158 23 9 1043 1851 150 185 9 chr1 60037049 60037492 -137157940 - RLTR28 LTR ERVL -3 521 1 9 1043 600 238 13 33 chr1 60037624 60037776 -137157656 + B1_Mur2 SINE Alu 1 149 0 9 1043 449 140 118 20 chr1 60040462 60040564 -137154868 - PB1D10 SINE Alu 0 117 6 9 1043 238 223 95 58 chr1 60040486 60040596 -137154836 - B4A SINE B4 -106 186 70 9 1043 443 217 0 0 chr1 60041156 60041239 -137154193 - ID4 SINE ID 0 83 1 9 1043 22 35 0 0 chr1 60041239 60041268 -137154164 + AT_rich Low_complexity Low_complexity 1 29 0 1 1043 21 0 0 0 chr1 60041622 60041643 -137153789 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 306 307 99 0 chr1 60042664 60042765 -137152667 + PB1D10 SINE Alu 1 111 -6 1 1043 252 241 0 0 chr1 60042891 60042949 -137152483 + PB1D9 SINE Alu 2 59 -61 1 1043 459 280 0 9 chr1 60043039 60043147 -137152285 - PB1D10 SINE Alu -6 111 5 1 1043 914 199 228 4 chr1 60043517 60043749 -137151683 - ORR1C2 LTR MaLR -96 288 5 1 1043 320 94 19 0 chr1 60044011 60044064 -137151368 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1043 283 222 112 51 chr1 60044839 60044947 -137150485 - B3A SINE B2 -77 116 4 1 1043 567 230 0 0 chr1 60044981 60045094 -137150338 - PB1D9 SINE Alu -6 114 2 1 1043 320 245 9 122 chr1 60045537 60045644 -137149788 - B3A SINE B2 -70 128 34 1 1043 290 273 125 18 chr1 60045644 60045756 -137149676 - B4A SINE B4 -63 229 106 1 1043 389 248 64 0 chr1 60048353 60048462 -137146970 - PB1D7 SINE Alu 0 120 5 1 1043 3430 153 58 0 chr1 60048612 60049289 -137146143 + Lx5 LINE L1 6260 7048 -10 1 1043 926 169 62 6 chr1 60049413 60049592 -137145840 - B3 SINE B2 -27 189 1 1 1043 2166 132 65 28 chr1 60049774 60050172 -137145260 - MTC LTR MaLR -8 413 1 1 1043 253 288 130 40 chr1 60050739 60050916 -137144516 - L1M5 LINE L1 -516 5657 5465 1 1043 355 284 99 50 chr1 60050972 60051113 -137144319 - B1F SINE Alu -1 148 1 1 1043 227 350 52 127 chr1 60051113 60051201 -137144231 - ID_B1 SINE B4 -4 220 9 1 1043 561 202 9 9 chr1 60051410 60051525 -137143907 - PB1D9 SINE Alu -4 116 2 1 1043 200 227 23 0 chr1 60051966 60052010 -137143422 + GA-rich Low_complexity Low_complexity 4 48 0 1 1043 324 225 62 0 chr1 60052090 60052170 -137143262 + PB1D10 SINE Alu 20 104 -13 1 1043 239 245 0 19 chr1 60052921 60052975 -137142457 - B4 SINE B4 -237 55 3 1 1043 714 95 0 19 chr1 60053480 60053587 -137141845 + B1_Mus1 SINE Alu 34 138 -10 1 1043 249 286 11 42 chr1 60053849 60053944 -137141488 + CT-rich Low_complexity Low_complexity 4 95 0 1 1043 255 237 45 22 chr1 60054986 60055012 -137140420 + ORR1B1-int LTR MaLR 617 645 -864 1 1043 839 126 8 0 chr1 60055012 60055139 -137140293 + B1_Mur4 SINE Alu 1 128 -22 1 1043 565 14 27 0 chr1 60055141 60055215 -137140217 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1043 189 0 0 0 chr1 60055216 60055237 -137140195 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1043 206 105 53 0 chr1 60055884 60055922 -137139510 + T-rich Low_complexity Low_complexity 1 40 0 1 1043 634 155 115 8 chr1 60055924 60056054 -137139378 - B1_Mur3 SINE Alu 0 149 6 1 1043 281 204 107 97 chr1 60055968 60056071 -137139361 - MT2B LTR ERVL -344 257 154 1 1043 221 335 54 16 chr1 60056065 60056250 -137139182 - B2_Mm2 SINE B2 -1 194 3 1 1043 343 338 31 31 chr1 60056097 60056256 -137139176 - RSINE1 SINE B4 -5 160 2 1 1043 949 223 61 0 chr1 60056344 60056473 -137138959 - B3 SINE B2 -3 213 79 1 1043 222 37 0 0 chr1 60056473 60056500 -137138932 + (CGGG)n Simple_repeat Simple_repeat 4 30 0 1 1043 949 223 61 0 chr1 60056500 60056567 -137138865 - B3 SINE B2 -138 78 6 1 1043 434 297 98 14 chr1 60057045 60057260 -137138172 + L1M4b LINE L1 858 1090 -6244 1 1043 426 282 29 0 chr1 60057324 60057427 -137138005 - PB1D7 SINE Alu -10 110 5 1 1043 231 250 0 0 chr1 60057463 60057507 -137137925 + L1M4b LINE L1 1317 1360 -4646 1 1043 369 265 114 12 chr1 60057857 60058053 -137137379 + L1M4b LINE L1 2425 2754 -4253 1 1043 630 169 85 0 chr1 60058068 60058186 -137137246 + B1_Mus2 SINE Alu 14 141 -6 1 1043 188 111 28 0 chr1 60058204 60058240 -137137192 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1043 465 281 96 0 chr1 60058441 60058587 -137136845 + RSINE1 SINE B4 2 161 -4 1 1043 723 216 7 45 chr1 60058640 60058795 -137136637 + B1_Mur2 SINE Alu 1 149 0 1 1043 498 179 0 0 chr1 60058825 60058909 -137136523 + B1_Mur2 SINE Alu 14 97 -52 1 1043 596 319 20 0 chr1 60058938 60059142 -137136290 + ID_B1 SINE B4 1 208 -16 1 1043 244 176 29 0 chr1 60059202 60059270 -137136162 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1043 201 259 35 12 chr1 60059342 60059428 -137136004 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1043 557 272 64 12 chr1 60059433 60059604 -137135828 - B3A SINE B2 -18 180 1 1 1043 605 191 45 22 chr1 60059862 60059996 -137135436 + B1_Mur1 SINE Alu 5 141 -8 1 1043 232 309 40 61 chr1 60059864 60060012 -137135420 + B4A SINE B4 90 234 -58 1 1043 352 229 63 71 chr1 60060013 60060140 -137135292 + L1M2 LINE L1 2116 2241 -3902 1 1043 1109 78 0 7 chr1 60060143 60060285 -137135147 + B1_Mm SINE Alu 1 141 -6 1 1043 186 43 0 0 chr1 60060287 60060310 -137135122 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1043 210 150 0 0 chr1 60060724 60060764 -137134668 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1043 514 99 0 113 chr1 60060820 60060979 -137134453 + C-rich Low_complexity Low_complexity 6 146 0 1 1043 423 237 0 0 chr1 60060988 60061144 -137134288 + CT-rich Low_complexity Low_complexity 2 157 0 1 1043 294 323 47 0 chr1 60062104 60062231 -137133201 + Kanga2_a DNA Tc2 227 359 -529 1 1043 1213 42 0 0 chr1 60062251 60062393 -137133039 + B1_Mus1 SINE Alu 1 142 -6 1 1043 1024 88 34 0 chr1 60062474 60062621 -137132811 - B2_Mm2 SINE B2 -43 152 1 1 1043 217 0 29 29 chr1 60063193 60063227 -137132205 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1043 1190 75 0 0 chr1 60063229 60063376 -137132056 - B1_Mus2 SINE Alu 0 147 1 1 1043 397 188 38 40 chr1 60063785 60063917 -137131515 + B1_Mur1 SINE Alu 1 149 0 1 1043 638 259 40 6 chr1 60063926 60064101 -137131331 + B3A SINE B2 1 181 -17 1 1043 401 266 51 25 chr1 60064428 60064586 -137130846 - B3A SINE B2 -36 162 1 1 1043 565 296 12 6 chr1 60065078 60065238 -137130194 - RSINE1 SINE B4 -2 163 3 1 1043 704 179 57 0 chr1 60065262 60065402 -137130030 - B1_Mur1 SINE Alu 0 149 2 1 1043 1314 62 17 22 chr1 60065484 60065665 -137129767 + B2_Mm2 SINE B2 2 181 -14 1 1043 530 65 114 0 chr1 60065915 60066038 -137129394 + T-rich Low_complexity Low_complexity 2 138 0 1 1043 323 125 0 14 chr1 60066321 60066394 -137129038 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 1 1043 916 182 0 0 chr1 60066394 60066542 -137128890 - B1_Mur3 SINE Alu -1 148 1 1 1043 1177 68 0 14 chr1 60066619 60066767 -137128665 - B1_Mus1 SINE Alu -1 147 2 1 1043 456 19 0 0 chr1 60067293 60067346 -137128086 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1043 476 241 65 0 chr1 60067348 60067456 -137127976 - RSINE1 SINE B4 -44 121 7 1 1043 219 69 0 0 chr1 60067578 60067607 -137127825 + (GAA)n Simple_repeat Simple_repeat 2 30 0 1 1043 547 314 6 0 chr1 60067607 60067763 -137127669 + RSINE1 SINE B4 3 159 -6 1 1043 976 127 0 0 chr1 60067792 60067934 -137127498 + B1_Mur4 SINE Alu 2 143 -7 1 1043 32 75 0 0 chr1 60068017 60068084 -137127348 + AT_rich Low_complexity Low_complexity 1 67 0 1 1043 279 0 0 0 chr1 60068664 60068695 -137126737 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1043 821 106 22 22 chr1 60068702 60068837 -137126595 - B1_Mur3 SINE Alu -13 136 2 1 1043 1272 217 99 38 chr1 60069057 60069285 -137126147 + MTD LTR MaLR 3 239 -180 1 1043 1004 7 48 0 chr1 60069285 60069430 -137126002 + (CAGG)n Simple_repeat Simple_repeat 4 155 0 1 1043 1272 217 99 38 chr1 60069430 60069594 -137125838 + MTD LTR MaLR 240 418 -1 1 1043 375 121 0 0 chr1 60069736 60069794 -137125638 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1043 35 24 0 0 chr1 60069830 60069872 -137125560 + AT_rich Low_complexity Low_complexity 1 42 0 1 1043 1343 105 10 5 chr1 60070143 60070335 -137125097 + B2_Mm2 SINE B2 1 193 -2 1 1043 377 279 39 0 chr1 60070360 60070464 -137124968 + PB1D10 SINE Alu 1 108 -9 1 1043 683 203 37 53 chr1 60070461 60070648 -137124784 + B2_Mm2 SINE B2 11 194 -1 1 1043 1208 68 0 0 chr1 60071194 60071341 -137124091 + B1_Mus2 SINE Alu 1 147 0 1 1043 553 200 35 9 chr1 60071756 60071872 -137123560 + PB1D9 SINE Alu 2 120 0 1 1043 213 191 0 0 chr1 60072251 60072289 -137123143 + A-rich Low_complexity Low_complexity 1 38 0 1 1043 1248 34 7 0 chr1 60072289 60072436 -137122996 + B1_Mus1 SINE Alu 1 148 0 1 1043 213 191 0 0 chr1 60072436 60072465 -137122967 + A-rich Low_complexity Low_complexity 39 67 0 1 1043 534 226 35 63 chr1 60072751 60072893 -137122539 + RSINE1 SINE B4 14 151 -14 1 1043 180 97 0 0 chr1 60072894 60072925 -137122507 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1043 377 266 61 9 chr1 60073400 60073514 -137121918 - B1F1 SINE Alu -6 143 24 1 1043 594 246 0 58 chr1 60073537 60073675 -137121757 - B1_Mm SINE Alu -16 131 2 1 1043 2364 128 19 6 chr1 60074302 60074664 -137120768 + ORR1B2 LTR MaLR 1 367 0 1 1043 806 232 102 87 chr1 60074948 60075391 -137120041 + RLTR19-int LTR ERVK 3578 3969 -2168 1 1043 325 251 20 10 chr1 60075531 60075728 -137119704 + CT-rich Low_complexity Low_complexity 1 199 0 1 1043 586 249 169 37 chr1 60076114 60076468 -137118964 + RMER10A LTR ERVL 17 417 -25 1 1043 180 77 0 0 chr1 60076842 60076868 -137118564 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 1 1043 1412 73 0 30 chr1 60077202 60077399 -137118033 - B2_Mm1a SINE B2 -1 192 2 1 1043 270 116 0 0 chr1 60077798 60077841 -137117591 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 1 1043 360 285 30 23 chr1 60077841 60077974 -137117458 - B1F SINE Alu -9 140 7 2 1043 643 239 0 22 chr1 60078080 60078217 -137117215 + RSINE1 SINE B4 15 148 -17 2 1043 910 169 0 17 chr1 60078524 60078755 -137116677 + (TATG)n Simple_repeat Simple_repeat 1 226 0 2 1043 390 200 0 0 chr1 60078755 60078820 -137116612 + RSINE1 SINE B4 46 110 -55 2 1043 267 103 0 0 chr1 60078820 60078859 -137116573 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2 1043 942 100 77 0 chr1 60079996 60080126 -137115306 + B1_Mur3 SINE Alu 2 141 -8 2 1043 921 164 0 0 chr1 60080173 60080313 -137115119 + B1_Mus1 SINE Alu 3 142 -6 2 1043 22 0 0 0 chr1 60080430 60080452 -137114980 + AT_rich Low_complexity Low_complexity 1 22 0 2 1043 1033 193 45 0 chr1 60080593 60080795 -137114637 - B3 SINE B2 -1 215 5 2 1043 28 29 0 0 chr1 60081084 60081119 -137114313 + AT_rich Low_complexity Low_complexity 1 35 0 2 1043 1378 73 0 11 chr1 60081239 60081418 -137114014 + B2_Mm2 SINE B2 1 177 -18 2 1043 444 37 0 0 chr1 60081774 60081828 -137113604 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1043 759 212 131 0 chr1 60081871 60082031 -137113401 + B3 SINE B2 32 212 -4 2 1043 620 239 14 7 chr1 60082191 60082330 -137113102 - ID_B1 SINE B4 -1 223 84 2 1043 1465 73 15 20 chr1 60082339 60082534 -137112898 - B2_Mm2 SINE B2 0 195 2 2 1043 887 163 214 0 chr1 60082566 60082744 -137112688 + B3 SINE B2 1 216 0 2 1043 694 157 41 41 chr1 60083020 60083031 -137112401 - B1_Mus2 SINE Alu 0 147 138 2 1043 315 0 0 0 chr1 60083031 60083066 -137112366 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1043 694 157 41 41 chr1 60083066 60083200 -137112232 - B1_Mus2 SINE Alu -10 137 2 2 1043 210 71 0 0 chr1 60083206 60083234 -137112198 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1043 1190 48 7 0 chr1 60083237 60083382 -137112050 - B1_Mus2 SINE Alu 0 147 2 2 1043 225 287 149 0 chr1 60083503 60083590 -137111842 + B1F2 SINE Alu 1 100 -49 2 1043 309 196 0 0 chr1 60083660 60083716 -137111716 - B3 SINE B2 -86 130 75 2 1043 223 204 0 85 chr1 60083782 60083841 -137111591 + B4 SINE B4 9 62 -230 2 1043 697 175 21 14 chr1 60083845 60083990 -137111442 + B1_Mur4 SINE Alu 5 150 0 2 1043 328 223 10 10 chr1 60083990 60084094 -137111338 + GA-rich Low_complexity Low_complexity 1 104 0 2 1043 2064 156 56 8 chr1 60084450 60084843 -137110589 + MTC LTR MaLR 1 412 -9 2 1043 791 122 122 0 chr1 60085567 60085698 -137109734 + B1_Mus1 SINE Alu 1 147 -1 2 1043 183 80 0 0 chr1 60085947 60085972 -137109460 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1043 241 286 32 0 chr1 60086222 60086285 -137109147 + ID4_ SINE ID 17 81 -2 2 1043 1084 60 8 0 chr1 60086441 60086575 -137108857 + B1_Mus1 SINE Alu 1 135 -13 2 1043 180 0 0 0 chr1 60086575 60086595 -137108837 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1043 769 181 6 6 chr1 60086598 60086776 -137108656 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1043 988 157 52 57 chr1 60086894 60087104 -137108328 + B3 SINE B2 2 210 -6 2 1043 423 187 43 21 chr1 60087138 60087231 -137108201 + PB1D7 SINE Alu 24 118 -2 2 1043 573 256 28 55 chr1 60087580 60087725 -137107707 - B1F SINE Alu -6 143 3 2 1043 241 225 11 130 chr1 60087741 60087833 -137107599 + MT2B LTR ERVL 153 233 -368 2 1043 637 150 92 0 chr1 60087759 60087879 -137107553 + B1_Mur4 SINE Alu 6 136 -14 2 1043 751 185 52 0 chr1 60087977 60088112 -137107320 + B1_Mur4 SINE Alu 1 142 -8 2 1043 263 302 35 0 chr1 60088225 60088311 -137107121 + PB1D10 SINE Alu 9 97 -20 2 1043 213 39 0 0 chr1 60088884 60088910 -137106522 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1043 2097 152 68 102 chr1 60088974 60089514 -137105918 + RLTR11A LTR ERVK 7 528 0 2 1043 3920 81 8 0 chr1 60089696 60090203 -137105229 + L1_Mus1 LINE L1 6057 6567 0 2 1043 687 168 79 21 chr1 60090808 60090948 -137104484 + B1_Mur3 SINE Alu 1 148 -1 2 1043 347 243 58 10 chr1 60091633 60091737 -137103695 + Tigger1 DNA MER2_type 102 210 -2208 2 1043 425 321 142 30 chr1 60092113 60092281 -137103151 + Tigger1 DNA MER2_type 223 411 -2007 2 1043 1151 98 10 103 chr1 60092281 60092327 -137103105 - B2_Mm2 SINE B2 -10 185 152 2 1043 1288 120 5 0 chr1 60092327 60092519 -137102913 + B2_Mm1a SINE B2 1 193 0 2 1043 1151 98 10 103 chr1 60092519 60092676 -137102756 - B2_Mm2 SINE B2 -44 151 1 2 1043 425 321 142 30 chr1 60092676 60092844 -137102588 + Tigger1 DNA MER2_type 412 597 -1821 2 1043 368 56 211 0 chr1 60093056 60093127 -137102305 - B2_Mm1t SINE B2 0 193 108 2 1043 708 260 78 12 chr1 60093314 60093559 -137101873 + Tigger1 DNA MER2_type 580 840 -1578 2 1043 264 321 71 27 chr1 60093565 60093677 -137101755 - PB1D10 SINE Alu 0 117 1 2 1043 571 259 101 72 chr1 60093715 60094111 -137101321 + MTD LTR MaLR 1 387 -34 2 1043 1731 143 91 125 chr1 60094111 60094575 -137100857 + RMER6D LTR ERVK 1 448 -272 2 1043 1349 68 17 0 chr1 60094575 60094751 -137100681 + B2_Mm1t SINE B2 1 179 -14 2 1043 307 164 0 35 chr1 60094783 60094840 -137100592 + B2_Mm2 SINE B2 47 101 -94 2 1043 387 0 0 0 chr1 60094885 60094928 -137100504 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1043 743 178 0 8 chr1 60095023 60095153 -137100279 + B1_Mus1 SINE Alu 2 130 -18 2 1043 252 0 0 0 chr1 60095309 60095337 -137100095 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1043 428 286 46 33 chr1 60095337 60095451 -137099981 + Tigger1 DNA MER2_type 1168 1282 -1136 2 1043 4505 12 2 0 chr1 60095451 60095943 -137099489 + MT2_Mm LTR ERVL 1 493 0 2 1043 428 286 46 33 chr1 60095943 60095980 -137099452 + Tigger1 DNA MER2_type 1283 1321 -1097 2 1043 235 246 148 0 chr1 60095984 60096045 -137099387 + AluF_3 SINE Alu 137 206 -105 2 1043 1470 266 126 57 chr1 60096108 60096791 -137098641 + Tigger1 DNA MER2_type 1320 2049 -369 2 1043 1114 76 7 7 chr1 60096791 60096937 -137098495 + B1_Mus1 SINE Alu 2 147 -1 2 1043 442 236 108 62 chr1 60097141 60097335 -137098097 + Tigger1 DNA MER2_type 2086 2288 -130 2 1043 591 85 0 0 chr1 60097350 60097432 -137098000 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1043 232 280 0 0 chr1 60097443 60097493 -137097939 + ID_B1 SINE B4 101 150 -74 2 1043 320 262 19 0 chr1 60097607 60097710 -137097722 - Ricksha_c DNA MuDR -7 2041 1937 2 1043 1164 55 0 7 chr1 60097721 60097868 -137097564 + B1_Mus2 SINE Alu 2 147 0 2 1043 263 156 50 38 chr1 60097868 60097948 -137097484 + A-rich Low_complexity Low_complexity 5 85 0 2 1043 1335 78 6 11 chr1 60098616 60098797 -137096635 + B2_Mm2 SINE B2 2 181 -14 2 1043 27 0 0 0 chr1 60099811 60099838 -137095594 + GC_rich Low_complexity Low_complexity 1 27 0 2 1043 253 185 44 53 chr1 60099907 60100021 -137095411 + (CCGCG)n Simple_repeat Simple_repeat 1 113 0 2 1043 1007 127 3 19 chr1 60101431 60101624 -137093808 - B2_Mm2 SINE B2 0 193 1 2 1043 345 229 0 0 chr1 60101696 60101766 -137093666 - B1_Mur2 SINE Alu -1 148 79 2 1043 15923 98 10 71 chr1 60101766 60101808 -137093624 - L1VL1 LINE L1 -2142 3741 3706 2 1043 204 48 47 23 chr1 60101808 60101851 -137093581 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1043 1169 48 7 0 chr1 60101851 60101996 -137093436 - B1_Mus1 SINE Alu 0 148 3 2 1043 15923 98 10 71 chr1 60101996 60103685 -137091747 - L1VL1 LINE L1 -2178 3705 2113 2 1043 1170 63 0 0 chr1 60103685 60103828 -137091604 + B1_Mm SINE Alu 5 147 0 2 1043 15923 98 10 71 chr1 60103828 60104373 -137091059 - L1VL1 LINE L1 -3771 2112 1636 2 1043 2801 105 5 15 chr1 60104373 60104780 -137090652 + RLTR9D LTR ERVK 1 403 0 2 1043 15923 75 4 58 chr1 60104780 60105470 -137089962 - L1VL1 LINE L1 -4248 1635 958 2 1043 1104 136 0 38 chr1 60105471 60105590 -137089842 - L1VL1 LINE L1 -6046 592 480 2 1043 2333 75 119 11 chr1 60105590 60105942 -137089490 - RLTR10 LTR ERVK 0 390 1 2 1043 1104 136 0 38 chr1 60105942 60106005 -137089427 - L1VL1 LINE L1 -6159 479 417 2 1043 763 238 49 5 chr1 60106045 60106248 -137089184 + ID_B1 SINE B4 2 213 -11 2 1043 301 277 176 0 chr1 60107403 60107522 -137087910 + B1F2 SINE Alu 1 140 -9 2 1043 1065 216 0 28 chr1 60107949 60108163 -137087269 + B3 SINE B2 1 208 -8 2 1043 1666 72 128 0 chr1 60109950 60110200 -137085232 - ORR1A1 LTR MaLR -64 282 1 2 1043 1166 61 0 26 chr1 60110207 60110359 -137085073 - B1_Mus1 SINE Alu 0 148 1 2 1043 822 159 0 0 chr1 60110520 60110652 -137084780 - B1_Mur3 SINE Alu 0 149 18 2 1043 292 286 0 49 chr1 60111436 60111517 -137083915 + B1F1 SINE Alu 3 79 -70 2 1043 388 261 131 18 chr1 60111637 60111805 -137083627 - B3A SINE B2 -9 189 3 2 1043 282 290 30 70 chr1 60112465 60112496 -137082936 - PB1D10 SINE Alu -21 96 1 2 1043 297 275 29 0 chr1 60112496 60112565 -137082867 - ID_B1 SINE B4 -72 152 82 2 1043 34 72 0 0 chr1 60112632 60112701 -137082731 + AT_rich Low_complexity Low_complexity 1 69 0 2 1043 297 128 0 0 chr1 60113054 60113101 -137082331 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1043 1179 48 7 7 chr1 60113101 60113248 -137082184 - B1_Mus1 SINE Alu 0 148 2 2 1043 474 238 31 16 chr1 60113605 60113733 -137081699 + L1MB3 LINE L1 5642 5771 -412 2 1043 3865 95 34 3 chr1 60113761 60114343 -137081089 + L1_Mm LINE L1 5273 5872 -11 2 1043 381 231 271 16 chr1 60114365 60114620 -137080812 + L1MB3 LINE L1 5758 6077 -106 2 1043 6391 68 30 6 chr1 60114833 60115494 -137079938 + L1VL1 LINE L1 415 1083 -5555 2 1043 261 83 0 0 chr1 60115494 60115530 -137079902 + (ATG)n Simple_repeat Simple_repeat 1 36 0 2 1043 19753 100 15 0 chr1 60115530 60118748 -137076684 + L1VL1 LINE L1 1084 4356 -1527 2 1043 2406 40 102 24 chr1 60118750 60119082 -137076350 + L1_Mus1 LINE L1 6210 6567 0 2 1043 1214 48 0 0 chr1 60119094 60119241 -137076191 + B1_Mus2 SINE Alu 1 147 0 2 1043 225 0 0 0 chr1 60119241 60119266 -137076166 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1043 1285 242 31 69 chr1 60119427 60119825 -137075607 + RMER19C LTR ERVK 174 611 0 2 1043 424 238 115 0 chr1 60119835 60119957 -137075475 + Lx7 LINE L1 6764 6899 -797 2 1043 253 267 122 19 chr1 60119957 60120064 -137075368 - LTR88c LTR Genie? -507 355 238 2 1043 602 308 134 9 chr1 60120064 60120385 -137075047 + Lx7 LINE L1 7009 7369 -327 2 1043 497 240 77 39 chr1 60120401 60120531 -137074901 + MTD LTR MaLR 44 178 -241 2 1043 1325 260 28 22 chr1 60120520 60120572 -137074860 + MTD LTR MaLR 91 138 -281 2 1043 3602 28 28 7 chr1 60120572 60120999 -137074433 + RLTR10C LTR ERVK 1 436 0 2 1043 1325 260 28 22 chr1 60120999 60121265 -137074167 + MTD LTR MaLR 139 411 -8 2 1043 297 191 0 73 chr1 60121616 60121684 -137073748 - Lx9 LINE L1 -1241 6403 6341 3 1043 1565 295 145 31 chr1 60121684 60122682 -137072750 + Lx9 LINE L1 6410 7455 -189 3 1043 1153 29 50 0 chr1 60122799 60122939 -137072493 + B1_Mm SINE Alu 1 147 0 3 1043 605 347 154 91 chr1 60123367 60123521 -137071911 - MTE-int LTR MaLR -497 1083 935 3 1043 919 215 289 94 chr1 60123521 60123967 -137071465 + MT2A LTR ERVL 1 533 0 3 1043 605 347 154 91 chr1 60123967 60124580 -137070852 - MTE-int LTR MaLR -646 934 235 3 1043 1216 41 0 0 chr1 60124580 60124727 -137070705 + B1_Mm SINE Alu 1 147 0 3 1043 605 347 154 91 chr1 60124727 60124813 -137070619 - MTE-int LTR MaLR -1346 234 179 3 1043 492 232 155 37 chr1 60124813 60124974 -137070458 - B3A SINE B2 -16 182 3 3 1043 605 347 154 91 chr1 60124974 60125137 -137070295 - MTE-int LTR MaLR -1402 178 1 3 1043 1237 35 7 0 chr1 60126417 60126562 -137068870 + B1_Mm SINE Alu 2 147 0 3 1043 258 116 0 0 chr1 60126564 60126607 -137068825 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1043 451 246 90 80 chr1 60127948 60128092 -137067340 + B3A SINE B2 27 176 -22 3 1043 201 94 0 0 chr1 60128092 60128124 -137067308 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 3 1043 451 247 78 92 chr1 60128124 60128159 -137067273 + B3A SINE B2 152 196 -2 3 1043 231 148 0 101 chr1 60129795 60129812 -137065620 + A-rich Low_complexity Low_complexity 1 15 0 3 1043 955 82 104 0 chr1 60129812 60129946 -137065486 + B1_Mus1 SINE Alu 1 148 0 3 1043 217 141 0 132 chr1 60129946 60130034 -137065398 + A-rich Low_complexity Low_complexity 15 92 0 3 1043 484 197 116 96 chr1 60130570 60130716 -137064716 + B1_Mur3 SINE Alu 1 149 0 3 1043 253 256 11 45 chr1 60130717 60130893 -137064539 + A-rich Low_complexity Low_complexity 2 171 0 3 1043 432 0 0 0 chr1 60130899 60130947 -137064485 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1043 959 121 0 14 chr1 60130950 60131092 -137064340 - B2_Mm2 SINE B2 -55 140 1 3 1043 569 229 21 7 chr1 60131304 60131445 -137063987 - B1_Mur1 SINE Alu -2 147 5 3 1043 1691 16 0 0 chr1 60131470 60131661 -137063771 - B2_Mm1a SINE B2 -1 192 2 3 1043 254 234 61 61 chr1 60131748 60131830 -137063602 + ORR1D1 LTR MaLR 293 374 0 3 1043 2310 98 18 58 chr1 60131860 60132240 -137063192 + RLTR8 LTR ERVK 1 365 0 3 1043 759 234 57 0 chr1 60133478 60133653 -137061779 - B3 SINE B2 -30 186 2 3 1043 632 175 119 0 chr1 60133742 60133868 -137061564 - B1_Mur4 SINE Alu -9 141 1 3 1043 359 297 157 45 chr1 60134068 60134202 -137061230 - RSINE1 SINE B4 -14 151 3 3 1043 422 313 66 15 chr1 60134217 60134353 -137061079 - ID_B1 SINE B4 0 224 82 3 1043 208 108 54 0 chr1 60134410 60134447 -137060985 + A-rich Low_complexity Low_complexity 1 39 0 3 1043 951 258 9 39 chr1 60134684 60134914 -137060518 - ID_B1 SINE B4 0 224 2 3 1043 707 191 21 0 chr1 60135164 60135305 -137060127 - B1_Mus2 SINE Alu 0 147 4 3 1043 225 0 0 0 chr1 60135389 60135414 -137060018 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1043 228 284 27 13 chr1 60135860 60135935 -137059497 + MER46C DNA MER2_type 253 328 -10 3 1043 446 327 0 34 chr1 60135934 60136051 -137059381 - PB1D7 SINE Alu -3 117 5 3 1043 541 221 0 19 chr1 60136214 60136320 -137059112 + PB1D10 SINE Alu 1 104 -13 3 1043 544 172 73 8 chr1 60136572 60136695 -137058737 + ID_B1 SINE B4 94 224 0 3 1043 1102 116 15 69 chr1 60136933 60137136 -137058296 + B2_Mm2 SINE B2 1 192 -3 3 1043 550 181 48 0 chr1 60137187 60137292 -137058140 + B1_Mur2 SINE Alu 40 149 0 3 1043 203 321 27 54 chr1 60137601 60137713 -137057719 + L2 LINE L2 2269 2377 -1042 3 1043 695 297 193 52 chr1 60137925 60138174 -137057258 - B4 SINE B4 -4 288 5 3 1043 1270 20 7 0 chr1 60138328 60138474 -137056958 - B1_Mm SINE Alu 0 147 1 3 1043 1327 81 37 16 chr1 60138477 60138665 -137056767 - B2_Mm2 SINE B2 -1 194 3 3 1043 737 258 32 21 chr1 60138681 60138871 -137056561 - B3A SINE B2 -6 192 1 3 1043 469 183 144 0 chr1 60139568 60139672 -137055760 + PB1D9 SINE Alu 2 120 0 3 1043 392 239 132 66 chr1 60139782 60139934 -137055498 + RSINE1 SINE B4 4 165 0 3 1043 551 271 8 0 chr1 60139989 60140118 -137055314 + RSINE1 SINE B4 13 142 -23 3 1043 652 220 8 0 chr1 60140160 60140292 -137055140 + B3A SINE B2 2 134 -64 3 1043 332 191 0 0 chr1 60140279 60140342 -137055090 + RLTR24 LTR ERV1 13 75 -454 3 1043 571 93 101 92 chr1 60140444 60140563 -137054869 + B1_Mur4 SINE Alu 30 149 -1 3 1043 346 267 0 26 chr1 60140863 60140940 -137054492 + ID4 SINE ID 7 81 -2 3 1043 705 89 177 0 chr1 60141421 60141545 -137053887 + B1_Mus1 SINE Alu 3 148 0 3 1043 681 161 8 39 chr1 60141794 60141923 -137053509 - B1_Mur4 SINE Alu -4 146 22 3 1043 396 296 30 53 chr1 60141882 60142014 -137053418 + B1F2 SINE Alu 12 140 -9 3 1043 859 230 35 5 chr1 60142038 60142235 -137053197 - B3 SINE B2 -10 206 4 3 1043 23 0 0 0 chr1 60142530 60142553 -137052879 + AT_rich Low_complexity Low_complexity 1 23 0 3 1043 469 232 41 34 chr1 60143498 60143645 -137051787 + B1F SINE Alu 2 149 0 3 1043 23 0 0 0 chr1 60143695 60143718 -137051714 + AT_rich Low_complexity Low_complexity 1 23 0 3 1043 580 240 39 0 chr1 60144241 60144370 -137051062 + B1F SINE Alu 1 134 -15 3 1043 335 175 8 0 chr1 60144604 60144663 -137050769 + B2_Mm2 SINE B2 1 63 -153 3 1043 352 229 0 0 chr1 60145274 60145344 -137050088 + ID2 SINE ID 3 72 -11 3 1043 553 198 32 10 chr1 60145349 60145466 -137049966 + B1_Mus1 SINE Alu 17 141 -8 3 1043 452 291 14 69 chr1 60145431 60145575 -137049857 + RSINE1 SINE B4 10 145 -20 3 1043 360 0 0 0 chr1 60145585 60145625 -137049807 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1043 345 263 15 113 chr1 60146265 60146297 -137049135 + MT2B LTR ERVL 139 157 -444 3 1043 553 234 19 0 chr1 60146297 60146404 -137049028 + B1_Mus2 SINE Alu 1 109 -38 3 1043 22 70 0 0 chr1 60146514 60146557 -137048875 + AT_rich Low_complexity Low_complexity 1 43 0 3 1043 684 214 25 38 chr1 60146570 60146730 -137048702 - RSINE1 SINE B4 -6 159 2 3 1043 609 206 9 0 chr1 60146753 60146860 -137048572 - B1_Mur1 SINE Alu -14 135 28 3 1043 989 224 45 0 chr1 60146903 60147104 -137048328 - B3 SINE B2 -6 210 1 3 1043 1199 105 2 12 chr1 60147112 60147299 -137048133 - B2_Mm2 SINE B2 -5 188 1 3 1043 548 267 69 0 chr1 60147564 60147695 -137047737 + RSINE1 SINE B4 21 160 -5 3 1043 198 0 0 0 chr1 60147706 60147728 -137047704 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 3 1043 402 177 184 20 chr1 60148112 60148210 -137047222 - PB1D9 SINE Alu -1 119 6 3 1043 245 364 45 11 chr1 60148145 60148234 -137047198 - B4 SINE B4 -136 156 65 3 1043 216 375 14 27 chr1 60148276 60148290 -137047142 - ID4_ SINE ID -2 81 9 3 1043 256 300 33 0 chr1 60148290 60148350 -137047082 - tRNA-Ala-GCY_ tRNA tRNA -12 63 2 3 1043 731 181 90 0 chr1 60148480 60148613 -137046819 - B1_Mur3 SINE Alu 0 149 5 3 1043 318 262 24 12 chr1 60148734 60148819 -137046613 - L1MC5 LINE L1 -175 7786 7701 3 1043 370 275 69 0 chr1 60148877 60149008 -137046424 - B1F1 SINE Alu -8 141 2 3 1043 371 345 80 13 chr1 60149213 60149363 -137046069 - RSINE1 SINE B4 -2 163 4 3 1043 296 359 39 0 chr1 60149631 60149759 -137045673 - B4A SINE B4 -158 134 2 3 1043 1145 48 7 7 chr1 60149790 60149936 -137045496 - B1_Mm SINE Alu 0 147 2 3 1043 228 86 0 0 chr1 60149968 60150003 -137045429 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1043 993 137 0 0 chr1 60150003 60150141 -137045291 - B1_Mus1 SINE Alu -9 139 2 3 1043 788 158 0 48 chr1 60150644 60150790 -137044642 + B1_Mur2 SINE Alu 10 148 -1 3 1043 870 105 23 0 chr1 60150871 60151004 -137044428 + B2_Mm2 SINE B2 59 194 -1 3 1043 681 195 0 8 chr1 60151029 60151158 -137044274 + B1_Mur4 SINE Alu 1 128 -22 3 1043 294 29 0 0 chr1 60151183 60151218 -137044214 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 3 1043 645 185 76 0 chr1 60151527 60151646 -137043786 - B1_Mur4 SINE Alu -21 129 2 3 1043 495 243 50 18 chr1 60152069 60152278 -137043154 + L1MB8 LINE L1 5218 5429 -751 3 1043 277 242 168 53 chr1 60152290 60152421 -137043011 + L1MB8 LINE L1 5530 5675 -509 3 1043 546 217 26 17 chr1 60152421 60152538 -137042894 + B1_Mus2 SINE Alu 3 120 -27 3 1043 288 270 103 24 chr1 60152539 60152831 -137042601 + L1MB8 LINE L1 5671 5985 -193 3 1043 416 148 278 0 chr1 60152880 60152995 -137042437 + B1_Mus2 SINE Alu 1 147 0 3 1043 407 162 12 0 chr1 60153089 60153169 -137042263 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1043 180 0 0 0 chr1 60153168 60153188 -137042244 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1043 1023 92 0 0 chr1 60153188 60153329 -137042103 - B1_Mm SINE Alu 0 147 7 3 1043 894 239 134 26 chr1 60153422 60153765 -137041667 + MTD LTR MaLR 40 419 0 3 1043 23 0 0 0 chr1 60155359 60155382 -137040050 + GC_rich Low_complexity Low_complexity 1 23 0 3 1043 208 0 0 59 chr1 60155668 60155702 -137039730 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 1043 351 268 35 48 chr1 60156913 60157058 -137038374 - B1F SINE Alu -3 146 4 3 1043 763 268 206 30 chr1 60157189 60157582 -137037850 + Tigger7 DNA MER2_type 23 484 -2007 3 1043 1586 22 0 16 chr1 60157735 60157922 -137037510 + B2_Mm1t SINE B2 2 185 -8 3 1043 1068 108 0 0 chr1 60157997 60158163 -137037269 + (TGG)n Simple_repeat Simple_repeat 2 167 0 3 1043 736 181 0 16 chr1 60158163 60158292 -137037140 + B1_Mur4 SINE Alu 23 149 -1 3 1043 518 215 144 12 chr1 60158827 60158987 -137036445 - B3A SINE B2 -15 183 3 4 1043 354 45 0 0 chr1 60159665 60159709 -137035723 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 4 1043 206 0 0 65 chr1 60159713 60159744 -137035688 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1043 821 169 28 14 chr1 60159744 60159888 -137035544 - B1_Mur3 SINE Alu -2 147 2 4 1043 384 293 142 11 chr1 60159894 60160077 -137035355 - Lx8 LINE L1 -93 7380 7174 4 1043 276 30 0 0 chr1 60160127 60160160 -137035272 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 4 1043 1094 82 0 14 chr1 60160160 60160299 -137035133 - B1_Mm SINE Alu -8 139 2 4 1043 490 303 26 78 chr1 60160421 60160729 -137034703 + L1_Mur3 LINE L1 5199 5490 -390 4 1043 1269 90 17 6 chr1 60160917 60161095 -137034337 + B2_Mm2 SINE B2 2 181 -14 4 1043 1089 96 7 0 chr1 60161189 60161335 -137034097 + B1_Mus1 SINE Alu 2 148 0 4 1043 409 32 48 0 chr1 60161338 60161400 -137034032 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 4 1043 392 282 111 64 chr1 60161404 60161500 -137033932 + Kanga1b DNA Tc2 489 589 -190 4 1043 1309 92 32 5 chr1 60161500 60161685 -137033747 + B2_Mm2 SINE B2 2 191 -4 4 1043 392 282 111 64 chr1 60161685 60161823 -137033609 + Kanga1b DNA Tc2 590 734 -45 4 130 427 263 149 8 chr1 60161922 60162056 -137033376 - RSINE1 SINE B4 -11 154 2 4 1044 740 331 95 34 chr1 60162136 60162461 -137032971 - MER74A LTR ERVL -14 544 200 4 1044 411 227 124 36 chr1 60162522 60162659 -137032773 - B1F SINE Alu 0 149 1 4 1044 3259 236 153 7 chr1 60162723 60163691 -137031741 - Lx8 LINE L1 -3 7470 6362 4 1044 487 294 230 0 chr1 60163834 60164069 -137031363 + MER44A DNA MER2_type 27 315 -24 4 1044 252 0 0 0 chr1 60164323 60164351 -137031081 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1044 1251 50 0 18 chr1 60164352 60164516 -137030916 - B2_Mm2 SINE B2 -34 161 1 4 1044 27 73 0 0 chr1 60164573 60164628 -137030804 + AT_rich Low_complexity Low_complexity 1 55 0 4 1044 232 304 18 0 chr1 60165159 60165215 -137030217 + B1F2 SINE Alu 2 58 -91 4 1044 222 308 127 13 chr1 60165160 60165239 -137030193 + ID_B1 SINE B4 84 171 -53 4 1044 24 0 0 0 chr1 60165340 60165364 -137030068 + AT_rich Low_complexity Low_complexity 1 24 0 4 1044 994 173 87 0 chr1 60165435 60165643 -137029789 + URR1A DNA MER1_type 1 226 0 4 1044 268 250 43 14 chr1 60165664 60165733 -137029699 + ID4_ SINE ID 9 79 -4 4 1044 692 210 7 77 chr1 60165745 60165900 -137029532 + B1_Mur3 SINE Alu 3 146 -3 4 1044 842 194 0 7 chr1 60166396 60166541 -137028891 - B1_Mus2 SINE Alu -2 145 2 4 1044 209 250 0 0 chr1 60166552 60166592 -137028840 + (TCCG)n Simple_repeat Simple_repeat 2 41 0 4 1044 6874 200 117 14 chr1 60166616 60169034 -137026398 - Lx6 LINE L1 -20 7030 4319 4 1044 3540 77 15 2 chr1 60169037 60169505 -137025927 - MT2C_Mm LTR ERVL -1 474 1 4 1044 280 26 0 0 chr1 60169505 60169543 -137025889 - MERVL-int LTR ERVL 0 5485 5448 4 1044 271 233 13 40 chr1 60169543 60169619 -137025813 - ORR1A3-int LTR MaLR -1323 640 567 4 1044 11207 112 82 53 chr1 60169623 60171634 -137023798 - MERVL_2A-int LTR ERVL -136 5625 3558 4 1044 4608 65 93 0 chr1 60171627 60172271 -137023161 - MERVL-int LTR ERVL -2069 3416 2713 4 1044 6036 154 284 14 chr1 60172271 60173934 -137021498 - L1_Mur3 LINE L1 -1657 4220 2109 4 1044 1651 188 150 35 chr1 60175356 60175863 -137019569 - RLTR22_Mur LTR ERVK -830 1018 454 4 1044 243 0 0 0 chr1 60175865 60175892 -137019540 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1044 1786 137 44 25 chr1 60175978 60176338 -137019094 - MYSERV6-int LTR ERVK -2627 6332 5966 4 1044 934 225 87 48 chr1 60176338 60176783 -137018649 + RMER2 LTR ERV1 1 566 -1 4 1044 4404 116 88 24 chr1 60176785 60177579 -137017853 - MYSERV6-int LTR ERVK -2991 5968 5124 4 1044 3316 119 66 23 chr1 60177552 60178155 -137017277 - MYSERV6-int LTR ERVK -6761 2198 1570 4 1044 5098 111 74 1 chr1 60178158 60179238 -137016194 - MYSERV6-int LTR ERVK -7799 1160 2 4 1044 2327 156 50 16 chr1 60179238 60179681 -137015751 - RMER6B LTR ERVK -3 458 1 4 1044 2469 161 58 9 chr1 60179784 60180331 -137015101 - L1_Mur3 LINE L1 -3831 2049 1476 4 1044 273 262 0 0 chr1 60180338 60180422 -137015010 - L1_Mur3 LINE L1 -5989 1097 1014 4 1044 665 209 13 6 chr1 60180414 60180573 -137014859 - L1_Mur3 LINE L1 -6684 1044 885 4 1044 201 108 0 0 chr1 60180998 60181035 -137014397 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 1044 764 138 71 21 chr1 60181045 60181186 -137014246 - B1_Mur4 SINE Alu -1 149 2 4 1044 266 139 0 0 chr1 60181328 60181371 -137014061 - ID_B1 SINE B4 -1 223 181 4 1044 191 370 49 0 chr1 60181415 60181496 -137013936 + MIR SINE MIR 8 92 -170 4 1044 22 35 0 0 chr1 60182529 60182558 -137012874 + AT_rich Low_complexity Low_complexity 1 29 0 4 1044 215 241 0 17 chr1 60182701 60182760 -137012672 + (TTG)n Simple_repeat Simple_repeat 2 59 0 4 1044 265 344 0 0 chr1 60183232 60183296 -137012136 - ID4_ SINE ID -7 76 13 4 1044 399 106 0 0 chr1 60183401 60183467 -137011965 + (T)n Simple_repeat Simple_repeat 1 66 0 4 1044 1102 77 0 0 chr1 60183472 60183615 -137011817 - B1_Mus1 SINE Alu -5 143 1 4 1044 894 144 154 5 chr1 60183654 60183842 -137011590 - B3 SINE B2 0 216 1 4 1044 298 288 0 0 chr1 60183937 60184017 -137011415 - ID4 SINE ID 0 83 4 4 1044 832 289 117 30 chr1 60184047 60184589 -137010843 - L1_Rod LINE L1 -2613 3527 2921 4 1044 526 289 9 0 chr1 60184590 60184704 -137010728 + B4A SINE B4 174 288 -4 4 1044 1239 41 0 7 chr1 60185088 60185237 -137010195 + B1_Mus1 SINE Alu 1 148 0 4 1044 450 0 0 0 chr1 60185245 60185295 -137010137 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1044 554 249 114 9 chr1 60185317 60185463 -137009969 + ID_B1 SINE B4 84 246 -46 4 1044 194 33 67 0 chr1 60185511 60185541 -137009891 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 4 1044 885 78 0 8 chr1 60185742 60185859 -137009573 - B2_Mm2 SINE B2 -79 116 1 4 1044 624 268 0 0 chr1 60186039 60186181 -137009251 - B1F1 SINE Alu -3 146 5 4 1044 666 210 173 35 chr1 60186204 60186377 -137009055 + B3 SINE B2 20 216 0 4 1044 212 341 218 9 chr1 60186416 60186641 -137008791 - L4 LINE RTE -377 1652 1381 4 1044 8721 165 46 55 chr1 60186778 60188638 -137006794 - RLTR22_Mur LTR ERVK -5 1843 1 4 1044 243 0 0 0 chr1 60189073 60189100 -137006332 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1044 318 196 36 0 chr1 60189456 60189512 -137005920 + PB1D9 SINE Alu 2 59 -61 4 1044 357 203 0 0 chr1 60189529 60189690 -137005742 + GA-rich Low_complexity Low_complexity 1 161 0 4 1044 591 178 9 27 chr1 60189692 60189802 -137005630 + B1_Mur4 SINE Alu 43 150 0 4 1044 551 207 34 8 chr1 60189808 60189925 -137005507 + PB1D9 SINE Alu 1 120 0 4 1044 1171 55 14 0 chr1 60189988 60190133 -137005299 + B1_Mm SINE Alu 1 147 0 4 1044 21 36 0 0 chr1 60190249 60190277 -137005155 + AT_rich Low_complexity Low_complexity 1 28 0 4 1044 895 235 77 0 chr1 60190280 60190476 -137004956 - B3 SINE B2 -4 212 2 4 1044 641 314 157 125 chr1 60190564 60190706 -137004726 - MLT1F2 LTR MaLR -13 547 410 4 1044 3338 25 32 7 chr1 60190706 60191109 -137004323 + L1Md_F2 LINE L1 6157 6569 -13 4 1044 1454 18 70 0 chr1 60191118 60191289 -137004143 + B2_Mm1a SINE B2 2 184 -9 4 1044 641 314 157 125 chr1 60191289 60191506 -137003926 - MLT1F2 LTR MaLR -151 409 154 4 1044 1144 51 0 0 chr1 60191506 60191643 -137003789 + B1_Mus1 SINE Alu 1 137 -11 4 1044 207 0 0 0 chr1 60191645 60191668 -137003764 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1044 641 314 157 125 chr1 60191668 60191822 -137003610 - MLT1F2 LTR MaLR -407 153 3 4 1044 794 205 2 35 chr1 60191857 60192063 -137003369 + B3 SINE B2 2 189 -4 4 1044 711 241 60 10 chr1 60192068 60192269 -137003163 + B3 SINE B2 1 211 -5 4 1044 523 198 187 28 chr1 60192301 60192483 -137002949 + B3 SINE B2 1 211 -5 4 1044 752 201 22 0 chr1 60192694 60192833 -137002599 + B1_Mur4 SINE Alu 1 142 -8 4 1044 602 254 15 7 chr1 60193767 60193902 -137001530 - ID_B1 SINE B4 -6 218 83 4 1044 276 59 0 0 chr1 60194050 60194084 -137001348 - L1MC LINE L1 -2326 5556 5523 4 1044 797 221 37 5 chr1 60194569 60194760 -137000672 + B3 SINE B2 1 197 -19 4 1044 186 43 0 0 chr1 60194843 60194866 -137000566 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 4 1044 274 273 0 189 chr1 60194902 60194953 -137000479 + B3 SINE B2 15 54 -162 4 1044 1332 73 11 6 chr1 60194953 60195133 -137000299 + B2_Mm1t SINE B2 1 181 -12 4 1044 274 273 0 189 chr1 60195133 60195203 -137000229 + B3 SINE B2 55 113 -103 4 1044 479 116 0 0 chr1 60195299 60195368 -137000064 + B1_Mur4 SINE Alu 81 149 -1 4 1044 478 178 176 8 chr1 60195397 60195516 -136999916 - B1_Mur2 SINE Alu -1 148 10 4 1044 608 114 22 156 chr1 60195544 60195679 -136999753 + B1_Mur3 SINE Alu 2 118 -31 4 1044 444 82 0 0 chr1 60195727 60195788 -136999644 + (CATA)n Simple_repeat Simple_repeat 3 63 0 4 1044 32 0 0 0 chr1 60196614 60196646 -136998786 + AT_rich Low_complexity Low_complexity 1 32 0 4 1044 926 243 29 0 chr1 60196652 60196862 -136998570 - B3 SINE B2 0 216 1 4 1044 325 304 38 12 chr1 60196954 60197034 -136998398 + RSINE1 SINE B4 70 151 -14 4 1044 354 45 0 0 chr1 60197036 60197080 -136998352 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1044 212 170 19 0 chr1 60197169 60197222 -136998210 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1044 816 206 14 0 chr1 60197243 60197384 -136998048 + B1_Mur1 SINE Alu 1 143 -6 4 1044 901 197 104 21 chr1 60197526 60197718 -136997714 - B3 SINE B2 0 216 9 4 1044 837 169 7 0 chr1 60197803 60197945 -136997487 - B1_Mus1 SINE Alu 0 148 6 4 1044 252 0 0 0 chr1 60198661 60198689 -136996743 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 4 1044 615 268 0 8 chr1 60198689 60198817 -136996615 - B1F SINE Alu -13 136 10 4 1044 1165 68 7 0 chr1 60198896 60199042 -136996390 + B1_Mus1 SINE Alu 2 148 0 4 1044 243 122 0 0 chr1 60199045 60199094 -136996338 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1044 263 170 0 0 chr1 60199154 60199207 -136996225 + Lx8 LINE L1 7416 7468 -5 5 1044 381 43 0 0 chr1 60199283 60199330 -136996102 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1044 231 291 208 17 chr1 60199444 60199622 -136995810 - MIR SINE MIR -26 236 25 5 1044 853 182 0 0 chr1 60199694 60199837 -136995595 - B1_Mur1 SINE Alu -5 144 2 5 1044 366 208 137 10 chr1 60199981 60200083 -136995349 - PB1D9 SINE Alu -5 115 1 5 1044 214 163 23 23 chr1 60200097 60200141 -136995291 - B1F2 SINE Alu -105 44 1 5 1044 283 342 53 0 chr1 60200437 60200551 -136994881 + MIR SINE MIR 118 237 -25 5 1044 21 0 0 0 chr1 60201229 60201250 -136994182 + AT_rich Low_complexity Low_complexity 1 21 0 5 1044 792 236 22 22 chr1 60201602 60201780 -136993652 - B3 SINE B2 -37 179 2 5 1044 570 260 141 15 chr1 60201997 60202196 -136993236 + B4 SINE B4 1 224 -68 5 1044 527 285 45 32 chr1 60202273 60202429 -136993003 + RSINE1 SINE B4 8 165 0 5 1044 1174 68 0 7 chr1 60202508 60202656 -136992776 + B1_Mm SINE Alu 1 147 0 5 1044 1358 82 27 5 chr1 60202713 60202898 -136992534 + B2_Mm2 SINE B2 2 190 -5 5 1044 749 162 88 7 chr1 60203054 60203191 -136992241 - B1_Mus1 SINE Alu 0 148 1 5 1044 572 263 59 86 chr1 60203306 60203493 -136991939 - B4A SINE B4 -5 287 106 5 1044 420 259 88 7 chr1 60203615 60203751 -136991681 - B1F SINE Alu -2 147 1 5 1044 605 179 104 7 chr1 60203791 60203926 -136991506 - B1F2 SINE Alu -1 148 1 5 1044 314 281 118 40 chr1 60203926 60203943 -136991489 - ID_B1 SINE B4 0 224 61 5 1044 494 240 23 8 chr1 60203950 60204080 -136991352 - ID_B1 SINE B4 0 224 93 5 1044 450 292 26 0 chr1 60205231 60205344 -136990088 + B1F SINE Alu 28 143 -6 5 1044 1203 49 0 0 chr1 60205469 60205611 -136989821 - B1_Mm SINE Alu -5 142 1 5 1044 796 176 15 0 chr1 60205621 60205752 -136989680 - B1_Mur2 SINE Alu -8 141 9 5 1044 923 224 44 19 chr1 60205769 60205974 -136989458 - B3 SINE B2 -6 210 1 5 1044 446 171 37 0 chr1 60206193 60206275 -136989157 + PB1D9 SINE Alu 31 115 -5 5 1044 270 0 0 0 chr1 60206276 60206306 -136989126 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1044 323 269 146 39 chr1 60206361 60206539 -136988893 - MIR SINE MIR -58 204 8 5 1044 281 200 58 70 chr1 60206837 60206923 -136988509 + PB1 SINE Alu 43 127 0 5 1044 24 32 0 0 chr1 60207181 60207212 -136988220 + AT_rich Low_complexity Low_complexity 1 31 0 5 1044 478 336 15 0 chr1 60207212 60207343 -136988089 - ID_B1 SINE B4 -13 211 79 5 1044 425 234 62 31 chr1 60208619 60208716 -136986716 + PB1D10 SINE Alu 1 100 -17 5 1044 25 24 0 23 chr1 60208783 60208802 -136986630 + AT_rich Low_complexity Low_complexity 1 19 0 5 1044 1199 48 0 7 chr1 60208802 60208950 -136986482 - B1_Mus2 SINE Alu 0 147 1 5 1044 25 24 0 23 chr1 60208950 60208973 -136986459 + AT_rich Low_complexity Low_complexity 1 23 0 5 1044 245 98 24 0 chr1 60209268 60209309 -136986123 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 5 1044 359 204 91 0 chr1 60209737 60209850 -136985582 + B1_Mur2 SINE Alu 11 149 0 5 1044 23 33 0 0 chr1 60210753 60210783 -136984649 + AT_rich Low_complexity Low_complexity 1 30 0 5 1044 303 28 0 0 chr1 60210841 60210877 -136984555 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1044 1011 99 35 0 chr1 60210877 60211019 -136984413 - B1_Mus1 SINE Alu 0 148 2 5 1044 326 91 18 0 chr1 60211146 60211201 -136984231 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1044 420 217 135 45 chr1 60211201 60211312 -136984120 + RSINE1 SINE B4 16 136 -29 5 1044 241 304 116 61 chr1 60211350 60211497 -136983935 + RSINE1 SINE B4 5 159 -6 5 1044 350 237 134 83 chr1 60212267 60212483 -136982949 + RMER2 LTR ERV1 333 559 -8 5 1044 671 122 0 65 chr1 60212599 60212722 -136982710 + RMER4A LTR ERVK 352 466 0 5 1044 26 0 0 0 chr1 60213134 60213160 -136982272 + AT_rich Low_complexity Low_complexity 1 26 0 5 1044 1124 71 0 0 chr1 60213854 60213994 -136981438 - B1_Mus1 SINE Alu -7 141 2 5 1044 429 20 0 0 chr1 60214565 60214615 -136980817 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 5 1044 897 81 0 0 chr1 60214616 60214739 -136980693 + (GGAAA)n Simple_repeat Simple_repeat 4 126 0 5 1044 324 0 0 0 chr1 60214740 60214776 -136980656 + (CAAGA)n Simple_repeat Simple_repeat 1 36 0 5 1044 1714 190 87 123 chr1 60214939 60215492 -136979940 - MT2A LTR ERVL 0 533 1 5 1044 704 273 168 28 chr1 60215899 60216287 -136979145 + RLTR12B LTR ERVK 41 482 -46 5 1044 302 278 0 14 chr1 60216343 60216416 -136979016 - ID4_ SINE ID -11 72 1 5 1044 798 177 0 20 chr1 60216443 60216593 -136978839 - B1_Mus1 SINE Alu 0 148 2 5 1044 595 230 23 31 chr1 60216597 60216727 -136978705 - B1_Mur1 SINE Alu 0 149 21 5 1044 526 258 109 16 chr1 60216823 60217034 -136978398 + L1M3 LINE L1 5596 5823 -355 5 1044 922 123 155 0 chr1 60217037 60217192 -136978240 + B2_Mm1t SINE B2 1 179 -14 5 1044 304 264 47 47 chr1 60217243 60217379 -136978053 + B2_Mm2 SINE B2 47 183 -10 5 1044 972 134 7 13 chr1 60217451 60217602 -136977830 + B1_Mur4 SINE Alu 1 150 0 5 1044 1706 169 52 83 chr1 60217706 60217807 -136977625 + ORR1D1 LTR MaLR 1 102 -272 5 1044 1646 36 0 0 chr1 60217807 60218000 -136977432 + B2_Mm1t SINE B2 1 193 0 5 1044 1706 169 52 83 chr1 60218000 60218284 -136977148 + ORR1D1 LTR MaLR 103 374 0 5 1044 505 229 37 122 chr1 60218386 60218550 -136976882 + B3 SINE B2 35 184 -11 5 1044 468 281 120 44 chr1 60218654 60218971 -136976461 + RLTR11A2 LTR ERVK 1 341 -186 5 1044 1176 51 0 0 chr1 60219034 60219172 -136976260 + B1_Mus2 SINE Alu 1 138 -9 5 1044 539 224 19 50 chr1 60219378 60219538 -136975894 - RSINE1 SINE B4 -8 157 3 5 1044 1058 233 9 5 chr1 60219820 60220031 -136975401 - ID_B1 SINE B4 -11 213 2 5 1044 236 54 54 0 chr1 60220033 60220070 -136975362 + (CATA)n Simple_repeat Simple_repeat 4 42 0 5 1044 959 132 14 14 chr1 60220088 60220234 -136975198 - B1_Mur4 SINE Alu -3 147 2 5 1044 1885 119 139 29 chr1 60220983 60221329 -136974103 + ORR1B1 LTR MaLR 1 384 -10 5 1044 376 267 72 40 chr1 60222021 60222146 -136973286 + B1F1 SINE Alu 21 149 0 5 1044 477 255 289 13 chr1 60222172 60222294 -136973138 + B3 SINE B2 1 165 -51 5 1044 441 0 0 0 chr1 60222294 60222343 -136973089 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1044 477 255 289 13 chr1 60222343 60222379 -136973053 + B3 SINE B2 166 203 -13 5 1044 633 155 29 0 chr1 60222587 60222690 -136972742 + B3 SINE B2 5 110 -106 5 1044 693 177 67 37 chr1 60222716 60222851 -136972581 + B1_Mur3 SINE Alu 4 142 -7 5 1044 1150 83 0 0 chr1 60222864 60223009 -136972423 + B1_Mus2 SINE Alu 1 145 -2 5 1044 538 47 35 0 chr1 60223009 60223094 -136972338 + (TAAA)n Simple_repeat Simple_repeat 2 89 0 5 1044 407 315 48 7 chr1 60223506 60223653 -136971779 + RSINE1 SINE B4 2 154 -11 5 1044 22 35 0 0 chr1 60223656 60223685 -136971747 + AT_rich Low_complexity Low_complexity 1 29 0 5 1044 401 238 0 82 chr1 60223791 60223832 -136971600 + MTC LTR MaLR 14 53 -368 5 1044 1250 98 38 0 chr1 60223832 60224015 -136971417 - B2_Mm2 SINE B2 -5 190 1 5 1044 401 238 0 82 chr1 60224015 60224083 -136971349 + MTC LTR MaLR 54 114 -307 5 1044 290 200 0 14 chr1 60224084 60224155 -136971277 + Lx4A LINE L1 6987 7056 -2 5 1044 1601 47 0 0 chr1 60224202 60224394 -136971038 + B2_Mm1t SINE B2 2 193 0 5 1044 23 0 0 0 chr1 60224395 60224418 -136971014 + AT_rich Low_complexity Low_complexity 1 23 0 5 1044 632 246 32 132 chr1 60224431 60224651 -136970781 + B3A SINE B2 1 198 0 5 1044 215 158 26 0 chr1 60224787 60224825 -136970607 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1044 480 252 0 34 chr1 60224938 60225057 -136970375 - B4A SINE B4 -176 116 2 5 1044 226 89 0 62 chr1 60225440 60225488 -136969944 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 5 1044 285 75 0 0 chr1 60225491 60225531 -136969901 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1044 581 72 12 0 chr1 60225531 60225614 -136969818 + (GA)n Simple_repeat Simple_repeat 2 85 0 5 1044 238 170 43 0 chr1 60225619 60225666 -136969766 + (CATG)n Simple_repeat Simple_repeat 1 49 0 5 1044 711 201 0 50 chr1 60225698 60225839 -136969593 + B3 SINE B2 76 209 -7 5 1044 254 120 0 81 chr1 60226250 60226305 -136969127 + PB1D9 SINE Alu 6 56 -92 5 1044 234 297 96 114 chr1 60226269 60226436 -136968996 + B4 SINE B4 60 223 -69 5 1044 749 101 0 9 chr1 60226328 60226438 -136968994 + B1_Mus2 SINE Alu 39 147 0 5 1044 400 206 46 18 chr1 60226681 60226790 -136968642 + L1MCa LINE L1 209 320 -6188 5 1044 363 314 98 25 chr1 60226857 60227020 -136968412 + L1MCa LINE L1 416 590 -5918 5 1044 367 250 108 27 chr1 60227034 60227145 -136968287 + L1MCa LINE L1 559 678 -5830 5 1044 2187 160 27 0 chr1 60227169 60227538 -136967894 + RLTR14 LTR ERV1 3 381 -1 5 1044 405 287 158 59 chr1 60227911 60227951 -136967481 + L1MCa LINE L1 763 800 -5708 5 1044 697 260 47 42 chr1 60227951 60228164 -136967268 + ID_B1 SINE B4 2 215 -9 5 1044 405 287 158 59 chr1 60228164 60228345 -136967087 + L1MCa LINE L1 801 1006 -5502 5 1044 923 271 11 0 chr1 60228352 60228540 -136966892 + B3 SINE B2 2 191 -25 5 1044 23 33 0 0 chr1 60228572 60228602 -136966830 + AT_rich Low_complexity Low_complexity 1 30 0 5 1044 985 235 49 43 chr1 60228602 60228971 -136966461 + L1MCa LINE L1 1002 1372 -5136 5 1044 537 92 0 0 chr1 60229473 60229549 -136965883 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1044 731 120 51 29 chr1 60229555 60229692 -136965740 - B1_Mm SINE Alu -7 140 1 5 1044 2904 162 29 17 chr1 60230199 60230720 -136964712 + RLTR11A LTR ERVK 2 528 0 5 1044 1017 129 0 7 chr1 60230951 60231099 -136964333 + B1_Mus2 SINE Alu 1 147 0 6 1044 234 0 0 0 chr1 60231115 60231141 -136964291 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1044 834 194 12 12 chr1 60231165 60231327 -136964105 - B3 SINE B2 -7 209 48 6 1044 358 336 146 39 chr1 60231345 60231605 -136963827 - L2 LINE L2 -628 2791 2504 6 1044 3132 141 117 96 chr1 60231684 60232176 -136963256 - RMER6A LTR ERVK 0 756 296 6 1044 1114 75 0 13 chr1 60232176 60232325 -136963107 - B1_Mm SINE Alu 0 147 1 6 1044 3132 141 117 96 chr1 60232325 60232569 -136962863 - RMER6A LTR ERVK -461 295 5 6 1044 1171 68 0 0 chr1 60232672 60232818 -136962614 + B1_Mus1 SINE Alu 1 146 -2 6 1044 288 0 0 0 chr1 60232818 60232850 -136962582 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1044 1335 238 107 23 chr1 60232873 60233260 -136962172 + RCHARR1 DNA MER1_type 76 495 -479 6 1044 426 283 116 8 chr1 60233260 60233381 -136962051 + RSINE1 SINE B4 2 135 -30 6 1044 378 0 0 0 chr1 60233381 60233423 -136962009 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1044 216 0 0 0 chr1 60233423 60233446 -136961986 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 1044 598 182 12 98 chr1 60233458 60233517 -136961915 + RCHARR1 DNA MER1_type 477 524 -450 6 1044 524 254 209 11 chr1 60233517 60233704 -136961728 + ID_B1 SINE B4 1 224 0 6 1044 598 182 12 98 chr1 60233704 60233808 -136961624 + RCHARR1 DNA MER1_type 525 625 -349 6 1044 285 264 78 142 chr1 60233800 60234073 -136961359 - RSINE1 SINE B4 0 292 48 6 1044 807 124 7 35 chr1 60234077 60234219 -136961213 + B1_Mur3 SINE Alu 12 149 0 6 1044 600 227 156 9 chr1 60234310 60234608 -136960824 + RCHARR1 DNA MER1_type 599 940 -34 6 1044 1166 82 0 0 chr1 60234633 60234780 -136960652 + B1_Mus1 SINE Alu 2 148 0 6 1044 393 75 0 0 chr1 60234780 60234833 -136960599 + (A)n Simple_repeat Simple_repeat 1 53 0 6 1044 452 254 131 34 chr1 60234901 60235076 -136960356 + B3 SINE B2 20 211 -5 6 1044 729 236 0 28 chr1 60235099 60235243 -136960189 + B1_Mur1 SINE Alu 1 140 -9 6 1044 231 262 118 12 chr1 60235287 60235372 -136960060 - MER58B DNA MER1_type -83 258 165 6 1044 297 0 0 0 chr1 60235571 60235604 -136959828 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1044 243 0 0 0 chr1 60235604 60235630 -136959802 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1044 541 241 90 6 chr1 60236046 60236213 -136959219 + B3A SINE B2 2 182 -16 6 1044 508 280 8 0 chr1 60236475 60236600 -136958832 - ID_B1 SINE B4 0 224 99 6 1044 216 231 77 0 chr1 60236686 60236738 -136958694 - ID SINE ID -151 73 18 6 1044 200 197 16 47 chr1 60237373 60237437 -136957995 + C-rich Low_complexity Low_complexity 4 65 0 6 1044 209 284 5 59 chr1 60237466 60237653 -136957779 + (CGGGG)n Simple_repeat Simple_repeat 2 178 0 6 1044 396 265 0 79 chr1 60238713 60238840 -136956592 + B1_Mur2 SINE Alu 4 120 -29 6 1044 21 0 0 0 chr1 60238899 60238920 -136956512 + AT_rich Low_complexity Low_complexity 1 21 0 6 1044 574 274 13 33 chr1 60239109 60239260 -136956172 - RSINE1 SINE B4 -16 149 2 6 1044 220 292 45 36 chr1 60239394 60239504 -136955928 - MIRb SINE MIR -15 253 143 6 1044 1166 75 0 0 chr1 60239938 60240084 -136955348 - B1_Mus2 SINE Alu 0 147 2 6 1044 672 102 0 0 chr1 60240550 60240648 -136954784 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 6 1044 388 234 26 0 chr1 60240652 60240729 -136954703 - ID4 SINE ID -4 79 1 6 1044 21 0 0 0 chr1 60240855 60240876 -136954556 + AT_rich Low_complexity Low_complexity 1 21 0 6 1044 209 299 93 0 chr1 60241199 60241306 -136954126 + MIRc SINE MIR 24 140 -128 6 1044 463 143 13 13 chr1 60241380 60241458 -136953974 - B1_Mur3 SINE Alu 0 149 72 6 1044 298 135 262 136 chr1 60241459 60241562 -136953870 - B3 SINE B2 -82 134 19 6 1044 411 321 88 74 chr1 60241679 60241934 -136953498 - L1MC5 LINE L1 -44 7917 7669 6 1044 583 222 263 0 chr1 60241934 60242105 -136953327 + B3 SINE B2 1 216 0 6 1044 411 321 88 74 chr1 60242105 60242535 -136952897 - L1MC5 LINE L1 -293 7668 7223 6 1044 396 103 0 0 chr1 60243956 60244014 -136951418 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1044 234 312 52 0 chr1 60244016 60244093 -136951339 - ID4_ SINE ID -1 82 2 6 1044 389 314 14 7 chr1 60244106 60244247 -136951185 - B1F SINE Alu -7 142 1 6 1044 902 215 55 5 chr1 60244353 60244554 -136950878 + B3 SINE B2 1 211 -5 6 1044 753 267 23 0 chr1 60244712 60244888 -136950544 - B3 SINE B2 -8 208 29 6 1044 283 221 37 61 chr1 60245084 60245166 -136950266 + MIRb SINE MIR 117 196 -72 6 1044 225 0 0 0 chr1 60245633 60245658 -136949774 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1044 207 197 45 0 chr1 60245830 60245896 -136949536 + T-rich Low_complexity Low_complexity 1 69 0 6 1044 1227 34 0 0 chr1 60245896 60246043 -136949389 - B1_Mus2 SINE Alu 0 147 1 6 1044 348 200 284 0 chr1 60246049 60246144 -136949288 + B1_Mur2 SINE Alu 21 142 -7 6 1044 226 234 0 0 chr1 60246389 60246436 -136948996 - L2 LINE L2 -1041 2378 2332 6 1044 288 282 13 13 chr1 60246685 60246764 -136948668 + PB1D7 SINE Alu 1 79 -41 6 1044 360 289 124 95 chr1 60246778 60247061 -136948371 + B4 SINE B4 2 292 0 6 1044 21 36 0 0 chr1 60247186 60247214 -136948218 + AT_rich Low_complexity Low_complexity 1 28 0 6 1044 216 394 0 27 chr1 60247214 60247287 -136948145 - ID4_ SINE ID -11 72 2 6 1044 25 31 0 0 chr1 60247292 60247324 -136948108 + AT_rich Low_complexity Low_complexity 1 32 0 6 1044 198 0 0 0 chr1 60247499 60247521 -136947911 + (TATG)n Simple_repeat Simple_repeat 2 23 0 6 1044 264 91 0 0 chr1 60247727 60247771 -136947661 + (ATTG)n Simple_repeat Simple_repeat 4 47 0 6 1044 796 156 23 0 chr1 60247771 60247899 -136947533 - B1_Mur4 SINE Alu -14 136 6 6 1044 493 171 69 21 chr1 60247997 60248107 -136947325 + B1F2 SINE Alu 1 140 -9 6 1044 508 290 206 42 chr1 60248208 60248543 -136946889 - MLT1H-int LTR MaLR 0 1409 1020 6 1044 27 23 0 22 chr1 60248616 60248639 -136946793 + AT_rich Low_complexity Low_complexity 1 23 0 6 1044 1213 128 0 39 chr1 60248639 60248842 -136946590 - B2_Mm2 SINE B2 0 195 1 6 1044 27 23 0 22 chr1 60248842 60248863 -136946569 + AT_rich Low_complexity Low_complexity 1 21 0 6 1044 573 207 33 0 chr1 60249377 60249498 -136945934 - B1_Mur2 SINE Alu -2 147 23 6 1044 198 261 234 21 chr1 60249919 60250013 -136945419 + MIRc SINE MIR 3 116 -152 6 1044 1005 119 0 0 chr1 60250693 60250836 -136944596 + B2_Mm2 SINE B2 1 143 -52 6 1044 760 162 51 7 chr1 60251006 60251143 -136944289 + B1_Mur4 SINE Alu 1 143 -7 6 1044 244 48 48 0 chr1 60251143 60251185 -136944247 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1044 272 330 28 19 chr1 60251630 60251738 -136943694 - MER21B LTR ERV1 -128 735 627 6 1044 201 147 0 0 chr1 60251779 60251813 -136943619 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 6 1044 23 0 0 0 chr1 60252062 60252085 -136943347 + AT_rich Low_complexity Low_complexity 1 23 0 6 1044 540 311 26 19 chr1 60252221 60252375 -136943057 + RSINE1 SINE B4 5 159 -6 6 1044 32 43 0 0 chr1 60252375 60252421 -136943011 + AT_rich Low_complexity Low_complexity 1 46 0 6 1044 306 321 71 129 chr1 60252510 60252573 -136942859 - B4 SINE B4 -2 290 110 6 1044 540 245 26 65 chr1 60252573 60252726 -136942706 - B1_Mur1 SINE Alu -2 147 1 6 1044 534 270 263 6 chr1 60252854 60253258 -136942174 - L1MC LINE L1 -360 5819 5317 6 1044 535 157 53 37 chr1 60253257 60253420 -136942012 - Lx3C LINE L1 0 7000 6827 6 1044 2673 153 42 10 chr1 60253449 60253951 -136941481 - Lx3C LINE L1 -258 6718 6201 6 1044 711 200 0 0 chr1 60254070 60254195 -136941237 - B1_Mus2 SINE Alu -20 127 3 6 1044 356 327 51 34 chr1 60254090 60254207 -136941225 - B4 SINE B4 -94 198 80 6 1044 213 65 0 0 chr1 60254244 60254275 -136941157 + (TTTAA)n Simple_repeat Simple_repeat 2 32 0 6 1044 1140 64 0 0 chr1 60254283 60254423 -136941009 - B1_Mus1 SINE Alu -7 141 2 6 1044 390 309 29 7 chr1 60254423 60254563 -136940869 - L1MC LINE L1 -981 5165 5023 6 1044 940 238 35 0 chr1 60254567 60254769 -136940663 + B3 SINE B2 3 211 -5 6 1044 296 222 19 0 chr1 60255031 60255085 -136940347 + B1_Mur3 SINE Alu 55 109 -40 6 1044 22 0 0 0 chr1 60255101 60255123 -136940309 + AT_rich Low_complexity Low_complexity 1 22 0 6 1044 32 26 0 0 chr1 60255653 60255692 -136939740 + AT_rich Low_complexity Low_complexity 1 39 0 6 1044 324 0 0 0 chr1 60255830 60255866 -136939566 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1044 309 283 99 45 chr1 60255872 60255983 -136939449 - RSINE1 SINE B4 -47 118 2 6 1044 304 319 74 16 chr1 60255994 60256115 -136939317 - L1M4 LINE L1 -572 5606 5479 6 1044 707 245 28 0 chr1 60256226 60256369 -136939063 - B3A SINE B2 -20 178 32 6 1044 734 217 86 59 chr1 60257207 60257393 -136938039 - B3 SINE B2 -4 191 1 6 1044 468 193 159 35 chr1 60257858 60257971 -136937461 - B1_Mur1 SINE Alu -11 138 12 6 1044 316 336 66 94 chr1 60258002 60258288 -136937144 + B4 SINE B4 2 279 -13 6 1044 587 308 58 11 chr1 60258471 60258645 -136936787 + B4 SINE B4 4 185 -107 6 1044 231 337 58 19 chr1 60258666 60258769 -136936663 - B1_Mur1 SINE Alu -6 143 37 6 1044 290 289 25 11 chr1 60258780 60258879 -136936553 - B4A SINE B4 -123 169 67 6 1044 437 239 162 0 chr1 60258877 60258994 -136936438 - RSINE1 SINE B4 -28 137 2 6 1044 374 207 53 84 chr1 60259103 60259198 -136936234 + ID_B1 SINE B4 109 200 -24 6 1044 215 162 0 0 chr1 60259196 60259233 -136936199 - B1_Mur4 SINE Alu -113 37 1 6 1044 587 299 96 50 chr1 60259240 60259350 -136936082 - MTE2b LTR MaLR -83 296 188 6 1044 741 53 0 0 chr1 60259350 60259444 -136935988 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 1044 587 299 96 50 chr1 60259444 60259572 -136935860 - MTE2b LTR MaLR -192 187 47 6 1044 834 254 35 0 chr1 60259653 60259850 -136935582 - B3 SINE B2 -11 205 2 7 1044 1115 75 87 6 chr1 60260429 60260590 -136934842 - B2_Mm2 SINE B2 -18 177 4 7 1044 281 26 26 0 chr1 60260790 60260828 -136934604 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1044 261 0 0 0 chr1 60261016 60261045 -136934387 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1044 306 104 17 23 chr1 60261058 60261134 -136934298 - B1_Mur4 SINE Alu 0 150 46 7 1044 24 0 0 0 chr1 60262348 60262372 -136933060 + AT_rich Low_complexity Low_complexity 1 24 0 7 1044 885 147 18 6 chr1 60262769 60262932 -136932500 + B2_Mm2 SINE B2 1 172 -44 7 1044 453 267 57 36 chr1 60263714 60263854 -136931578 - ID_B1 SINE B4 -3 221 79 7 1044 887 240 29 0 chr1 60263876 60264080 -136931352 + B3 SINE B2 1 210 -6 7 1044 684 246 162 0 chr1 60264108 60264299 -136931133 + ID_B1 SINE B4 3 224 0 7 1044 6824 76 7 1 chr1 60264571 60265545 -136929887 + L1_Mus2 LINE L1 4761 5740 -826 7 1044 363 284 108 30 chr1 60265908 60266171 -136929261 - MLT1B LTR MaLR -5 385 70 7 1044 639 284 63 34 chr1 60266300 60266537 -136928895 - MLT-int LTR MaLR -25 1710 1467 7 1044 1318 78 5 50 chr1 60266824 60267026 -136928406 - B2_Mm2 SINE B2 -1 194 2 7 1044 1235 47 0 0 chr1 60267738 60267886 -136927546 - B1_Mus1 SINE Alu 0 148 1 7 1044 23 0 0 0 chr1 60267964 60267987 -136927445 + AT_rich Low_complexity Low_complexity 1 23 0 7 1044 207 204 0 0 chr1 60268419 60268468 -136926964 + GA-rich Low_complexity Low_complexity 1 49 0 7 1044 932 211 166 30 chr1 60268471 60268829 -136926603 - RMER10A LTR ERVL -5 437 4 7 1044 506 248 54 27 chr1 60268916 60269065 -136926367 - RSINE1 SINE B4 -2 163 11 7 1044 327 49 0 0 chr1 60269369 60269410 -136926022 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 7 1044 203 61 0 29 chr1 60270694 60270728 -136924704 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 7 1044 576 248 45 8 chr1 60270729 60270863 -136924569 - B1_Mur4 SINE Alu -1 149 11 7 1044 327 326 167 0 chr1 60271988 60272120 -136923312 - RSINE1 SINE B4 -8 157 4 7 1044 367 146 0 0 chr1 60272806 60272861 -136922571 + B4A SINE B4 2 56 -236 7 1044 232 200 268 21 chr1 60272861 60272903 -136922529 + B3A SINE B2 2 122 -76 7 1044 738 302 61 18 chr1 60273137 60273467 -136921965 + MER2 DNA MER2_type 2 345 0 7 1044 189 308 139 0 chr1 60273781 60273910 -136921522 + MIRc SINE MIR 57 212 -50 7 1044 24 32 0 0 chr1 60274488 60274519 -136920913 + AT_rich Low_complexity Low_complexity 1 31 0 7 1044 1064 58 7 0 chr1 60274608 60274745 -136920687 + B1_Mus1 SINE Alu 11 148 0 7 1044 369 243 154 7 chr1 60274906 60275055 -136920377 - Charlie4a DNA MER1_type -18 490 320 7 1044 911 163 7 13 chr1 60275057 60275206 -136920226 - B1_Mur3 SINE Alu 0 149 2 7 1044 287 259 24 36 chr1 60275221 60275305 -136920127 - ID4_ SINE ID 0 83 1 7 1044 222 269 27 95 chr1 60275354 60275428 -136920004 + AluG_3 SINE Alu 149 217 -94 7 1044 551 295 52 0 chr1 60275480 60275673 -136919759 - Charlie4a DNA MER1_type -275 233 31 7 1044 863 131 0 65 chr1 60275736 60275876 -136919556 - B1_Mur3 SINE Alu -2 147 17 7 1044 2092 106 51 3 chr1 60275876 60276188 -136919244 - ORR1A2 LTR MaLR 0 327 1 7 1044 863 131 0 65 chr1 60276188 60276202 -136919230 - B1_Mur3 SINE Alu -133 16 3 7 1044 278 325 137 8 chr1 60276707 60276727 -136918705 - ID_B1 SINE B4 -1 223 84 7 1044 409 281 39 10 chr1 60276727 60276831 -136918601 - PB1D10 SINE Alu -8 109 3 7 1044 797 196 7 7 chr1 60277232 60277381 -136918051 - B1_Mur4 SINE Alu 0 150 2 7 1044 245 306 31 46 chr1 60278244 60278374 -136917058 + ID4_ SINE ID 1 128 -24 7 1044 198 103 0 0 chr1 60279601 60279630 -136915802 + (TTTTC)n Simple_repeat Simple_repeat 4 32 0 7 1044 1203 113 0 22 chr1 60279750 60279931 -136915501 - B2_Mm2 SINE B2 -18 177 1 7 1044 489 132 289 0 chr1 60280683 60280797 -136914635 - B1_Mus1 SINE Alu -1 147 1 7 1044 426 335 27 7 chr1 60281630 60281780 -136913652 - RSINE1 SINE B4 -8 157 5 7 1044 824 194 0 0 chr1 60281815 60281949 -136913483 + B1_Mur2 SINE Alu 5 138 -11 7 1044 403 222 55 11 chr1 60283094 60283185 -136912247 - RSINE1 SINE B4 -68 97 3 7 1044 483 309 36 6 chr1 60283226 60283392 -136912040 + B4A SINE B4 3 173 -119 7 1044 419 183 73 154 chr1 60283689 60283799 -136911633 - B1F SINE Alu -1 148 26 7 1044 184 281 175 0 chr1 60284368 60284425 -136911007 - MIRb SINE MIR -193 75 9 7 1044 389 315 13 70 chr1 60284709 60284866 -136910566 + RSINE1 SINE B4 18 165 0 7 1044 21 0 0 0 chr1 60286237 60286258 -136909174 + AT_rich Low_complexity Low_complexity 1 21 0 7 1044 236 237 47 78 chr1 60286597 60286661 -136908771 - B3 SINE B2 -39 177 116 7 1044 214 320 194 0 chr1 60287761 60287864 -136907568 + B1_Mm SINE Alu 7 129 -18 7 1044 189 0 0 0 chr1 60287865 60287886 -136907546 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 7 1044 195 42 0 0 chr1 60288161 60288185 -136907247 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1044 361 76 355 18 chr1 60288215 60288322 -136907110 - B2_Mm2 SINE B2 -6 189 47 7 1044 1100 104 11 23 chr1 60288389 60288566 -136906866 - B2_Mm1t SINE B2 -17 176 2 7 1044 791 199 205 0 chr1 60288590 60288761 -136906671 - B3 SINE B2 -10 206 1 7 1044 1262 90 17 0 chr1 60289605 60289783 -136905649 + B2_Mm2 SINE B2 1 181 -14 7 1044 7409 65 7 7 chr1 60289811 60290932 -136904500 - L1_Mus2 LINE L1 -22 6544 5420 7 1044 222 37 0 0 chr1 60291298 60291325 -136904107 + (TTA)n Simple_repeat Simple_repeat 3 29 0 7 1044 259 295 0 128 chr1 60291372 60291481 -136903951 + PB1D10 SINE Alu 17 111 -6 7 1044 1163 173 22 14 chr1 60292786 60293009 -136902423 + URR1B DNA MER1_type 1 225 0 7 1045 1209 41 0 0 chr1 60294385 60294531 -136900901 + B1_Mus2 SINE Alu 2 147 0 7 1045 287 312 12 0 chr1 60295124 60295204 -136900228 - ID4 SINE ID -2 81 1 7 1045 231 36 0 0 chr1 60295817 60295845 -136899587 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 7 1045 449 241 15 36 chr1 60296002 60296163 -136899269 - B3A SINE B2 -36 157 1 7 1045 1123 144 17 0 chr1 60296182 60296362 -136899070 - B2_Mm2 SINE B2 -8 187 5 7 1045 430 331 44 132 chr1 60296401 60296470 -136898962 - MLT1B LTR MaLR 0 390 331 7 1045 1634 31 0 0 chr1 60296470 60296662 -136898770 - B2_Mm1t SINE B2 -1 192 1 7 1045 430 331 44 132 chr1 60296662 60296957 -136898475 - MLT1B LTR MaLR -60 330 58 7 1045 910 150 14 0 chr1 60297655 60297802 -136897630 - B1_Mur4 SINE Alu -1 149 1 7 1045 1462 33 16 11 chr1 60297846 60298029 -136897403 + B2_Mm2 SINE B2 2 185 -10 7 1045 260 265 247 6 chr1 60298244 60298426 -136897006 + B4A SINE B4 4 229 -63 7 1045 291 71 0 0 chr1 60298557 60298599 -136896833 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1045 24 0 0 0 chr1 60298617 60298641 -136896791 + AT_rich Low_complexity Low_complexity 1 24 0 7 1045 228 35 0 0 chr1 60298761 60298790 -136896642 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1045 569 201 251 34 chr1 60298862 60299037 -136896395 + B3 SINE B2 2 214 -2 7 1045 22 35 0 0 chr1 60299127 60299156 -136896276 + AT_rich Low_complexity Low_complexity 1 29 0 7 1045 840 268 59 21 chr1 60301160 60301396 -136894036 + B4A SINE B4 26 270 -22 7 1045 273 128 0 0 chr1 60301449 60301496 -136893936 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 7 1045 255 125 0 0 chr1 60301872 60301912 -136893520 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1045 452 306 114 5 chr1 60301951 60302135 -136893297 - B4A SINE B4 -87 205 2 7 1045 611 225 21 14 chr1 60302187 60302327 -136893105 + B1_Mur1 SINE Alu 2 142 -7 7 1045 210 105 0 0 chr1 60302430 60302468 -136892964 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1045 1184 68 0 0 chr1 60302468 60302616 -136892816 - B1_Mus1 SINE Alu 0 148 1 7 1045 1538 27 21 5 chr1 60302689 60302877 -136892555 - B2_Mm1t SINE B2 -1 192 2 7 1045 221 200 13 51 chr1 60303453 60303532 -136891900 + CT-rich Low_complexity Low_complexity 4 79 0 7 1045 275 377 0 0 chr1 60303532 60303609 -136891823 - PB1D10 SINE Alu -35 82 6 7 1045 291 164 0 35 chr1 60303822 60303879 -136891553 - B2_Mm2 SINE B2 -94 101 47 7 1045 1275 85 11 0 chr1 60303964 60304140 -136891292 - B2_Mm1t SINE B2 -14 179 2 7 1045 871 80 0 23 chr1 60304863 60304991 -136890441 + B1_Mus1 SINE Alu 24 148 0 7 1045 229 68 22 22 chr1 60305468 60305513 -136889919 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 7 1045 724 222 7 20 chr1 60305697 60305844 -136889588 + B1_Mur2 SINE Alu 5 149 0 7 1045 698 236 0 0 chr1 60305927 60306067 -136889365 + B1_Mus2 SINE Alu 3 142 -5 7 1045 209 157 39 0 chr1 60306076 60306127 -136889305 + (CAAA)n Simple_repeat Simple_repeat 3 55 0 7 1045 329 59 39 0 chr1 60306870 60306921 -136888511 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 7 1045 926 0 18 0 chr1 60306921 60307029 -136888403 + (TTCCC)n Simple_repeat Simple_repeat 4 114 0 7 1045 435 146 247 0 chr1 60307064 60307153 -136888279 - B3 SINE B2 -104 112 2 7 1045 290 335 166 11 chr1 60307227 60307414 -136888018 + MIR SINE MIR 21 236 -26 7 1045 2425 44 0 0 chr1 60307496 60307789 -136887643 - L1_Mus1 LINE L1 0 6567 6275 7 1045 351 338 27 0 chr1 60308423 60308571 -136886861 + MIR SINE MIR 74 225 -37 7 1045 427 265 218 8 chr1 60308675 60308808 -136886624 + ID_B1 SINE B4 11 171 -53 8 1045 411 202 97 44 chr1 60308900 60309014 -136886418 - PB1D7 SINE Alu 0 120 1 8 1045 335 221 104 0 chr1 60309024 60309101 -136886331 - BC1_Mm scRNA scRNA -67 85 1 8 1045 24 32 0 0 chr1 60309155 60309186 -136886246 + AT_rich Low_complexity Low_complexity 1 31 0 8 1045 1046 127 28 6 chr1 60309189 60309371 -136886061 - B2_Mm2 SINE B2 -7 188 3 8 1045 674 315 71 21 chr1 60309373 60309613 -136885819 - B4A SINE B4 -39 253 2 8 1045 423 0 0 0 chr1 60309616 60309663 -136885769 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1045 580 245 16 38 chr1 60309664 60309882 -136885550 - B4 SINE B4 -22 270 20 8 1045 486 293 35 0 chr1 60309964 60310080 -136885352 - RSINE1 SINE B4 -18 147 28 8 1045 37 23 0 0 chr1 60310121 60310165 -136885267 + AT_rich Low_complexity Low_complexity 1 44 0 8 1045 286 272 37 0 chr1 60310504 60310585 -136884847 - MTEa LTR MaLR -19 360 277 8 1045 238 301 38 40 chr1 60310914 60311039 -136884393 - MTEa LTR MaLR -229 136 1 8 1045 28 71 0 0 chr1 60311385 60311441 -136883991 + AT_rich Low_complexity Low_complexity 1 56 0 8 1045 21 0 0 0 chr1 60311642 60311663 -136883769 + AT_rich Low_complexity Low_complexity 1 21 0 8 1045 213 65 0 0 chr1 60311946 60311977 -136883455 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1045 333 68 0 0 chr1 60311977 60312021 -136883411 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1045 318 364 31 0 chr1 60312426 60312555 -136882877 - MIR SINE MIR -49 213 81 8 1045 5757 57 11 1 chr1 60312798 60313536 -136881896 + L1Md_F3 LINE L1 5826 6570 -14 8 1045 361 212 239 34 chr1 60313909 60314026 -136881406 + B1_Mur1 SINE Alu 2 142 -7 8 1045 432 0 0 0 chr1 60314042 60314090 -136881342 + (TAA)n Simple_repeat Simple_repeat 3 50 0 8 1045 1036 165 60 60 chr1 60314479 60314730 -136880702 + Lx4A LINE L1 6807 7057 -1 8 1045 33 80 0 0 chr1 60314730 60314805 -136880627 + AT_rich Low_complexity Low_complexity 1 75 0 8 1045 21 36 0 0 chr1 60315460 60315488 -136879944 + AT_rich Low_complexity Low_complexity 1 28 0 8 1045 273 349 118 9 chr1 60315717 60315827 -136879605 + PB1D10 SINE Alu 1 122 -27 8 1045 507 209 0 0 chr1 60315827 60315937 -136879495 + (TA)n Simple_repeat Simple_repeat 1 110 0 8 1045 871 161 14 7 chr1 60316012 60316156 -136879276 - B1_Mus2 SINE Alu -2 145 1 8 1045 236 295 116 0 chr1 60316397 60316492 -136878940 - PB1D10 SINE Alu -8 109 4 8 1045 24 0 0 0 chr1 60316544 60316568 -136878864 + AT_rich Low_complexity Low_complexity 1 24 0 8 1045 360 64 0 0 chr1 60316571 60316618 -136878814 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 8 1045 333 0 0 0 chr1 60316618 60316654 -136878778 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1045 355 261 97 97 chr1 60316760 60316904 -136878528 + B4A SINE B4 148 291 -1 8 1045 1277 80 29 0 chr1 60317675 60317850 -136877582 - B2_Mm2 SINE B2 -14 181 2 8 1045 488 233 0 0 chr1 60318069 60318159 -136877273 - B3 SINE B2 -5 211 122 8 1045 369 251 75 0 chr1 60318677 60318810 -136876622 - L1_Mur3 LINE L1 -689 5611 5435 8 1045 247 45 0 64 chr1 60318849 60318896 -136876536 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 8 1045 1029 317 7 46 chr1 60319152 60319456 -136875976 - B4 SINE B4 0 292 1 8 1045 454 243 10 0 chr1 60320467 60320570 -136874862 - PB1D9 SINE Alu -14 106 3 8 1045 306 344 106 30 chr1 60321315 60321447 -136873985 + B1F SINE Alu 8 149 0 8 1045 235 319 29 78 chr1 60321953 60322055 -136873377 - RSINE1 SINE B4 0 165 69 8 1045 435 52 0 0 chr1 60322661 60322719 -136872713 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1045 592 284 69 76 chr1 60322752 60323027 -136872405 - B4 SINE B4 -18 274 2 8 1045 201 109 0 80 chr1 60323597 60323647 -136871785 + T-rich Low_complexity Low_complexity 5 50 0 8 1045 244 125 0 20 chr1 60323648 60323697 -136871735 - B1_Mur2 SINE Alu -1 148 101 8 1045 596 269 0 0 chr1 60323714 60323833 -136871599 - B1_Mur2 SINE Alu -28 121 3 8 1045 709 324 136 25 chr1 60323833 60324225 -136871207 + LTR40a LTR ERVL 80 515 -4 8 1045 213 325 111 52 chr1 60324953 60325125 -136870307 - B3A SINE B2 -16 182 1 8 1045 25 0 0 0 chr1 60325644 60325669 -136869763 + AT_rich Low_complexity Low_complexity 1 25 0 8 1045 519 272 24 54 chr1 60325675 60325842 -136869590 - B3 SINE B2 -7 209 48 8 1045 204 97 0 0 chr1 60325883 60325914 -136869518 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1045 210 265 217 49 chr1 60326293 60326436 -136868996 - ID_B1 SINE B4 -55 169 3 8 1045 183 80 0 0 chr1 60326664 60326689 -136868743 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1045 622 279 82 0 chr1 60326689 60326702 -136868730 - ID_B1 SINE B4 0 224 212 8 1045 225 0 0 0 chr1 60326702 60326727 -136868705 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1045 622 284 86 3 chr1 60326727 60326917 -136868515 - ID_B1 SINE B4 -13 211 5 8 1045 591 269 165 38 chr1 60327638 60328337 -136867095 - L1M4 LINE L1 -398 5776 4986 8 1045 624 33 11 0 chr1 60328337 60328427 -136867005 - L1Md_F3 LINE L1 -18 6566 6476 8 1045 235 310 70 17 chr1 60328741 60328796 -136866636 - ID_B1 SINE B4 -80 144 24 8 1045 290 283 0 0 chr1 60328796 60328856 -136866576 - ID4 SINE ID -1 82 23 8 1045 23 33 0 0 chr1 60328922 60328952 -136866480 + AT_rich Low_complexity Low_complexity 1 30 0 8 1045 768 141 169 0 chr1 60329429 60329571 -136865861 - B2_Mm2 SINE B2 -28 167 2 8 1045 349 231 62 36 chr1 60330874 60330986 -136864446 + PB1D9 SINE Alu 1 115 -5 8 1045 601 122 115 0 chr1 60331013 60331152 -136864280 - Lx9 LINE L1 -1 7643 7489 8 1045 4155 202 34 22 chr1 60331170 60332041 -136863391 - Lx9 LINE L1 -363 7281 6400 8 1045 2891 197 50 29 chr1 60332077 60332849 -136862583 - Lx9 LINE L1 -1592 6052 5242 8 1045 238 26 51 0 chr1 60332849 60332888 -136862544 + (GTTTG)n Simple_repeat Simple_repeat 4 44 0 8 1045 2891 191 49 32 chr1 60332888 60332971 -136862461 - Lx9 LINE L1 -606 5241 5148 8 1045 773 193 20 7 chr1 60333290 60333436 -136861996 - B1_Mur2 SINE Alu 0 149 2 8 1045 210 37 0 0 chr1 60333513 60333540 -136861892 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1045 1058 86 0 35 chr1 60333540 60333684 -136861748 - B1_Mus1 SINE Alu -8 140 2 8 1045 29 28 0 0 chr1 60333929 60333965 -136861467 + AT_rich Low_complexity Low_complexity 1 36 0 8 1045 239 318 0 70 chr1 60334400 60334471 -136860961 + ID4 SINE ID 1 66 -17 8 1045 266 299 15 0 chr1 60335045 60335116 -136860316 - PB1 SINE Alu -66 61 1 8 1045 364 300 39 62 chr1 60336135 60336263 -136859169 - MLT1A LTR MaLR -249 125 1 8 1045 335 331 93 7 chr1 60336282 60336422 -136859010 + L1MB7 LINE L1 5926 6077 -107 8 1045 504 32 0 0 chr1 60336753 60336815 -136858617 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 8 1045 685 223 0 7 chr1 60336854 60337003 -136858429 - B1_Mur3 SINE Alu 0 149 2 8 1045 294 295 13 0 chr1 60338281 60338359 -136857073 + ID4_ SINE ID 1 79 -4 8 1045 1111 215 10 0 chr1 60338985 60339194 -136856238 - B3 SINE B2 -5 211 1 8 1045 561 133 0 26 chr1 60339548 60339664 -136855768 - Lx3_Mus LINE L1 0 7009 6897 8 1045 354 278 109 15 chr1 60339718 60339919 -136855513 - L1M2 LINE L1 -520 5777 5558 8 1045 501 295 115 0 chr1 60340131 60340270 -136855162 + RSINE1 SINE B4 5 159 -6 8 1045 765 223 59 25 chr1 60340403 60340605 -136854827 + B3 SINE B2 3 211 -5 8 1045 312 329 0 0 chr1 60341235 60341305 -136854127 + ID4 SINE ID 3 72 -11 8 1045 712 191 64 12 chr1 60341712 60341905 -136853527 - B3 SINE B2 -2 193 1 8 1045 586 258 154 84 chr1 60342160 60342354 -136853078 + L1M4 LINE L1 5254 5486 -698 8 1045 1156 51 0 0 chr1 60342354 60342492 -136852940 + B1_Mm SINE Alu 2 139 -8 8 1045 586 258 154 84 chr1 60342492 60342725 -136852707 + L1M4 LINE L1 5487 5711 -473 8 1045 681 272 73 0 chr1 60342784 60342990 -136852442 + ID_B1 SINE B4 3 223 -1 8 1045 579 251 191 52 chr1 60343173 60343383 -136852049 + B4A SINE B4 2 240 -52 8 1045 269 305 28 28 chr1 60343545 60343690 -136851742 - B1F SINE Alu 0 149 5 8 1045 280 366 99 0 chr1 60344664 60344806 -136850626 + MER58B DNA MER1_type 185 340 -1 8 1045 215 387 0 36 chr1 60344940 60345050 -136850382 - BC1_Mm scRNA scRNA -44 108 3 8 1045 276 30 0 0 chr1 60346225 60346258 -136849174 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1045 574 287 252 13 chr1 60346327 60346556 -136848876 - B4A SINE B4 -8 284 1 8 1045 3377 23 8 0 chr1 60346891 60347284 -136848148 - MTA_Mm LTR MaLR 0 396 1 8 1045 880 94 65 7 chr1 60347950 60348089 -136847343 - B1_Mus2 SINE Alu 0 147 1 8 1045 951 221 15 10 chr1 60348398 60348599 -136846833 - B3 SINE B2 -14 202 1 8 1045 267 234 0 30 chr1 60348947 60348976 -136846456 + (TATG)n Simple_repeat Simple_repeat 2 28 0 8 1045 183 80 0 0 chr1 60348976 60349001 -136846431 + (CATA)n Simple_repeat Simple_repeat 4 28 0 8 1045 267 234 0 30 chr1 60349001 60349037 -136846395 + (TATG)n Simple_repeat Simple_repeat 2 37 0 8 1045 852 203 7 0 chr1 60349099 60349247 -136846185 - B1_Mur4 SINE Alu 0 150 2 8 1045 180 179 0 0 chr1 60349515 60349554 -136845878 + (CATA)n Simple_repeat Simple_repeat 4 42 0 8 1045 737 170 34 0 chr1 60349839 60349986 -136845446 - URR1A DNA MER1_type 0 226 75 8 1045 232 167 0 0 chr1 60350094 60350130 -136845302 - URR1A DNA MER1_type -190 36 1 8 1045 454 226 165 0 chr1 60350269 60350384 -136845048 + B1F SINE Alu 7 140 -9 8 1045 393 224 136 53 chr1 60350384 60350397 -136845035 + ID_B1 SINE B4 86 224 0 8 1045 493 255 29 7 chr1 60350419 60350557 -136844875 + B1F SINE Alu 1 141 -8 8 1045 252 301 0 27 chr1 60350565 60350640 -136844792 + BC1_Mm scRNA scRNA 2 74 -78 9 1045 1005 92 14 0 chr1 60350675 60350816 -136844616 - B1_Mur4 SINE Alu -7 143 1 9 1045 227 219 0 0 chr1 60350856 60350897 -136844535 + tRNA-Met_ tRNA tRNA 1 41 -35 9 1045 568 246 294 33 chr1 60350945 60351159 -136844273 - B4 SINE B4 -18 274 5 9 1045 1140 68 0 7 chr1 60351354 60351501 -136843931 - B1_Mus2 SINE Alu 0 147 2 9 1045 350 269 120 0 chr1 60351631 60351739 -136843693 - B1F SINE Alu -1 148 28 9 1045 28 71 0 0 chr1 60351875 60351931 -136843501 + AT_rich Low_complexity Low_complexity 1 56 0 9 1045 252 330 76 19 chr1 60352085 60352190 -136843242 - L2a LINE L2 -1 3425 3315 9 1045 598 245 70 32 chr1 60352201 60352357 -136843075 + RSINE1 SINE B4 4 165 0 9 1045 636 264 104 74 chr1 60352967 60353237 -136842195 - B4A SINE B4 -13 279 2 9 1045 458 244 129 32 chr1 60353291 60353477 -136841955 - B3 SINE B2 -12 204 1 9 1045 1381 84 16 5 chr1 60353486 60353677 -136841755 - B2_Mm2 SINE B2 -2 193 1 9 1045 464 299 13 34 chr1 60353784 60353806 -136841626 + ID_B1 SINE B4 61 206 -18 9 1045 688 205 24 0 chr1 60353806 60353933 -136841499 + B1_Mur1 SINE Alu 2 131 -18 9 1045 1672 201 210 37 chr1 60354101 60354586 -136840846 - RMER4B LTR ERVK 0 585 17 9 1045 256 367 0 12 chr1 60354879 60354959 -136840473 - Cheshire DNA MER1_type -2338 82 4 9 1045 251 295 21 83 chr1 60355198 60355294 -136840138 + RSINE1 SINE B4 3 92 -73 9 1045 270 0 0 0 chr1 60355463 60355493 -136839939 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1045 184 0 62 31 chr1 60355581 60355613 -136839819 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 9 1045 714 308 136 16 chr1 60355642 60355959 -136839473 - MER68 LTR ERVL -126 437 83 9 1045 2941 235 111 4 chr1 60355962 60356671 -136838761 - Lx6 LINE L1 -69 7391 6607 9 1045 14617 152 104 67 chr1 60356731 60358316 -136837116 - L1_Mur3 LINE L1 -995 4885 3235 9 1045 204 40 0 0 chr1 60358316 60358341 -136837091 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1045 14617 152 104 67 chr1 60358341 60358402 -136837030 - L1_Mur3 LINE L1 -2646 3234 3169 9 1045 1352 93 5 5 chr1 60358402 60358597 -136836835 - B2_Mm2 SINE B2 0 195 1 9 1045 14617 152 104 67 chr1 60358597 60358700 -136836732 - L1_Mur3 LINE L1 -2712 3168 3033 9 1045 649 198 118 34 chr1 60358700 60358878 -136836554 - B2_Mm2 SINE B2 -2 193 1 9 1045 14617 152 104 67 chr1 60358878 60359303 -136836129 - L1_Mur3 LINE L1 -2712 3032 2465 9 1045 306 0 0 0 chr1 60359303 60359337 -136836095 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1045 14617 149 97 48 chr1 60359337 60361376 -136834056 - L1_Mur3 LINE L1 -3416 2464 298 9 1045 486 284 88 0 chr1 60362335 60362483 -136832949 - RSINE1 SINE B4 -2 163 3 9 1045 24 32 0 0 chr1 60362483 60362514 -136832918 + AT_rich Low_complexity Low_complexity 1 31 0 9 1045 742 144 8 31 chr1 60362548 60362677 -136832755 - B3 SINE B2 -90 126 1 9 1045 26 30 0 0 chr1 60362677 60362710 -136832722 + AT_rich Low_complexity Low_complexity 1 33 0 9 1045 929 250 35 0 chr1 60362710 60362910 -136832522 - B3 SINE B2 -8 208 2 9 1045 1396 79 11 0 chr1 60363057 60363247 -136832185 - B2_Mm1t SINE B2 0 193 2 9 1045 375 351 0 0 chr1 60363382 60363496 -136831936 - B3A SINE B2 -79 119 6 9 1045 9869 83 5 10 chr1 60364047 60366249 -136829183 - L1VL2 LINE L1 -1248 2367 177 9 1045 399 288 75 75 chr1 60366290 60366463 -136828969 - MIRb SINE MIR -56 212 40 9 1045 692 49 167 0 chr1 60366595 60366697 -136828735 - B1_Mus2 SINE Alu 0 147 29 9 1045 899 138 7 40 chr1 60367218 60367369 -136828063 - B1_Mur4 SINE Alu -2 148 3 9 1045 528 231 38 8 chr1 60367567 60367698 -136827734 - B1_Mur1 SINE Alu -14 135 1 9 1045 1126 204 0 18 chr1 60368280 60368500 -136826932 - B3 SINE B2 0 216 1 9 1045 772 284 53 75 chr1 60369760 60370042 -136825390 + B4A SINE B4 11 286 -6 9 1045 2706 217 122 6 chr1 60370183 60370893 -136824539 - Lx9 LINE L1 0 7644 6852 9 1045 233 360 110 0 chr1 60371561 60371697 -136823735 + Charlie7 DNA MER1_type 154 304 -2308 9 1045 833 232 82 5 chr1 60371997 60372192 -136823240 - B3 SINE B2 -5 211 2 9 1045 275 273 11 22 chr1 60372587 60372677 -136822755 + CT-rich Low_complexity Low_complexity 3 91 0 9 1045 332 257 0 0 chr1 60372887 60372957 -136822475 + B1F SINE Alu 80 149 0 9 1045 21 36 0 0 chr1 60373019 60373047 -136822385 + AT_rich Low_complexity Low_complexity 1 28 0 9 1045 358 327 108 67 chr1 60373185 60373409 -136822023 - L1M5 LINE L1 -1806 4340 4102 9 1045 1300 70 0 75 chr1 60373409 60373610 -136821822 + B2_Mm2 SINE B2 2 187 -8 9 1045 358 327 108 67 chr1 60373610 60373700 -136821732 - L1M5 LINE L1 -2045 4101 4013 9 1045 614 259 18 31 chr1 60373966 60374129 -136821303 - RSINE1 SINE B4 -2 163 3 9 1045 1664 26 0 0 chr1 60374246 60374438 -136820994 - B2_Mm1a SINE B2 0 193 2 9 1045 2373 48 6 19 chr1 60374561 60374876 -136820556 - L1_Mus2 LINE L1 0 6566 6256 9 1045 22 56 0 0 chr1 60375069 60375105 -136820327 + AT_rich Low_complexity Low_complexity 1 36 0 9 1045 362 315 29 44 chr1 60375140 60375276 -136820156 + B1F SINE Alu 13 146 -3 9 1045 224 256 0 0 chr1 60375286 60375325 -136820107 + ID4 SINE ID 4 42 -41 9 1045 426 279 18 9 chr1 60375370 60375482 -136819950 + B4A SINE B4 137 249 -43 9 1045 585 239 92 43 chr1 60375540 60375724 -136819708 + B3A SINE B2 1 193 -5 9 1045 262 296 11 80 chr1 60376861 60376949 -136818483 + ID4_ SINE ID 2 83 0 9 1045 39687 10 0 20 chr1 60376957 60382537 -136812895 + L1Md_A LINE L1 7 5586 -297 9 1045 9046 1 0 0 chr1 60382537 60383533 -136811899 + L1Md_A LINE L1 5587 6582 0 9 1045 39687 11 0 26 chr1 60383533 60383945 -136811487 + L1Md_A LINE L1 5587 5874 -9 9 1045 2107 126 83 29 chr1 60383932 60384420 -136811012 + Lx2 LINE L1 6007 6642 -355 9 1045 276 305 12 24 chr1 60385106 60385190 -136810242 + B3A SINE B2 3 85 -113 9 1045 633 157 0 0 chr1 60385414 60385548 -136809884 + GA-rich Low_complexity Low_complexity 1 134 0 9 1045 22 56 0 0 chr1 60385551 60385587 -136809845 + AT_rich Low_complexity Low_complexity 1 36 0 9 1045 376 240 160 0 chr1 60385807 60385907 -136809525 + PB1D10 SINE Alu 2 117 0 9 1045 219 36 0 0 chr1 60386874 60386902 -136808530 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1045 382 264 236 0 chr1 60386914 60387020 -136808412 + B1F2 SINE Alu 1 131 -18 9 1045 713 245 39 15 chr1 60387045 60387248 -136808184 + B3 SINE B2 3 210 -6 9 1045 461 254 71 0 chr1 60387369 60387495 -136807937 + B1F1 SINE Alu 15 149 0 9 1045 562 184 0 37 chr1 60387964 60388071 -136807361 + PB1D10 SINE Alu 15 117 0 9 1045 223 302 184 48 chr1 60388071 60388089 -136807343 + B4A SINE B4 100 241 -51 9 1045 42 71 0 0 chr1 60388153 60388237 -136807195 + AT_rich Low_complexity Low_complexity 1 84 0 9 1045 23 54 0 0 chr1 60388525 60388562 -136806870 + AT_rich Low_complexity Low_complexity 1 37 0 9 1045 372 178 0 0 chr1 60388910 60388983 -136806449 + (TA)n Simple_repeat Simple_repeat 1 73 0 9 1045 30 45 0 0 chr1 60389004 60389048 -136806384 + AT_rich Low_complexity Low_complexity 1 44 0 9 1045 225 338 14 14 chr1 60389847 60389919 -136805513 + ID4 SINE ID 1 72 -11 9 1045 211 195 0 0 chr1 60390700 60390741 -136804691 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1045 30 0 0 0 chr1 60391268 60391298 -136804134 + AT_rich Low_complexity Low_complexity 1 30 0 9 1045 264 196 0 73 chr1 60392087 60392142 -136803290 - ID4_ SINE ID -1 82 32 9 1045 232 235 19 38 chr1 60392475 60392528 -136802904 - ID4 SINE ID -30 53 2 9 1045 416 373 17 8 chr1 60393116 60393235 -136802197 + PB1 SINE Alu 1 120 -7 9 1045 183 42 0 0 chr1 60393610 60393634 -136801798 + (TTTAG)n Simple_repeat Simple_repeat 3 26 0 9 1045 642 159 37 0 chr1 60393634 60393741 -136801691 - B1_Mur1 SINE Alu -12 137 27 9 1045 310 287 72 111 chr1 60393741 60393787 -136801645 - B4 SINE B4 -78 214 68 9 1045 314 270 45 0 chr1 60394419 60394508 -136800924 + PB1D7 SINE Alu 1 93 -27 9 1045 234 131 32 32 chr1 60394524 60394587 -136800845 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 9 1045 436 331 21 7 chr1 60395910 60396050 -136799382 + B1F1 SINE Alu 1 142 -7 9 1045 853 115 38 25 chr1 60396050 60396210 -136799222 - ORR1D1 LTR MaLR -212 162 1 9 1045 608 261 137 22 chr1 60396210 60396412 -136799020 + RMER5 LTR ERV1 302 534 0 9 1045 769 138 98 15 chr1 60396730 60396862 -136798570 + B1_Mm SINE Alu 5 147 0 9 1045 233 247 82 133 chr1 60397261 60397359 -136798073 + MT2B LTR ERVL 148 240 -361 9 1045 447 250 0 37 chr1 60397282 60397390 -136798042 + PB1D9 SINE Alu 13 116 -4 9 1045 577 314 19 13 chr1 60397399 60397557 -136797875 + RSINE1 SINE B4 2 160 -5 9 1045 200 59 0 29 chr1 60397560 60397595 -136797837 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1045 1374 85 11 11 chr1 60397829 60398020 -136797412 - B2_Mm1t SINE B2 -2 191 1 9 1045 1015 157 27 48 chr1 60398525 60398712 -136796720 + B2_Mm2 SINE B2 1 183 -12 9 1045 251 349 142 0 chr1 60398867 60398973 -136796459 + PB1 SINE Alu 2 122 -5 9 1045 741 229 163 5 chr1 60399423 60399607 -136795825 - ID_B1 SINE B4 -11 213 1 9 1045 537 162 179 0 chr1 60399737 60399854 -136795578 + B1_Mur1 SINE Alu 12 149 0 9 1045 346 186 114 29 chr1 60400751 60400856 -136794576 + PB1D10 SINE Alu 1 114 -3 9 1045 485 216 85 39 chr1 60401211 60401341 -136794091 + ID_B1 SINE B4 80 215 -9 9 1045 226 314 110 37 chr1 60401471 60401580 -136793852 + PB1 SINE Alu 7 123 -4 9 1045 509 329 99 100 chr1 60401618 60402247 -136793185 - L2 LINE L2 -628 2791 2164 1 1045 6562 186 87 16 chr1 60402457 60403824 -136791608 - Lx7 LINE L1 -432 7264 5755 1 1045 306 0 0 0 chr1 60403824 60403858 -136791574 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1045 585 314 15 45 chr1 60404027 60404227 -136791205 + B3A SINE B2 2 195 -3 1 1045 452 214 0 9 chr1 60404284 60404397 -136791035 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 1 1045 465 356 23 0 chr1 60404511 60404685 -136790747 + MER76 LTR ERVL 1 178 -513 1 1045 9904 69 17 1 chr1 60404685 60406743 -136788689 - L1VL4 LINE L1 -1437 2122 26 1 1045 2528 173 143 30 chr1 60406754 60406919 -136788513 - L1_Mur3 LINE L1 -99 5781 5590 1 1045 3564 107 11 60 chr1 60406919 60407457 -136787975 - RLTR1B LTR ERV1 0 512 1 1 1045 2528 173 143 30 chr1 60407457 60407892 -136787540 - L1_Mur3 LINE L1 -291 5589 5113 1 1045 419 246 55 0 chr1 60408151 60408261 -136787171 - PB1D10 SINE Alu -1 116 1 1 1045 384 277 315 23 chr1 60408435 60408653 -136786779 + B4A SINE B4 11 292 0 1 1045 180 0 0 0 chr1 60409122 60409142 -136786290 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 1 1045 250 200 0 62 chr1 60409142 60409197 -136786235 - ID4 SINE ID -8 75 24 1 1045 230 0 33 0 chr1 60409719 60409749 -136785683 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 1 1045 332 285 172 7 chr1 60410460 60410605 -136784827 + B4 SINE B4 2 170 -122 1 1045 586 252 138 0 chr1 60410836 60410995 -136784437 + B3 SINE B2 14 194 -22 1 1045 423 202 0 0 chr1 60411000 60411089 -136784343 + A-rich Low_complexity Low_complexity 1 89 0 1 1045 516 258 143 12 chr1 60411815 60411976 -136783456 - B3A SINE B2 -16 182 1 1 1045 206 267 23 0 chr1 60412099 60412185 -136783247 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1045 497 117 55 0 chr1 60412211 60412339 -136783093 + (TG)n Simple_repeat Simple_repeat 1 135 0 1 1045 600 273 226 4 chr1 60412342 60412581 -136782851 - B4A SINE B4 0 292 1 1 1045 193 250 209 9 chr1 60412641 60412746 -136782686 + MER5A DNA MER1_type 62 187 -2 1 1045 232 318 16 0 chr1 60413331 60413394 -136782038 - ID4 SINE ID -4 79 16 1 1045 973 115 58 0 chr1 60413413 60413552 -136781880 + B1_Mus1 SINE Alu 2 148 0 1 1045 336 48 0 0 chr1 60413714 60413756 -136781676 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 1 1045 629 75 32 0 chr1 60413760 60413854 -136781578 + (TTTTC)n Simple_repeat Simple_repeat 1 97 0 1 1045 355 249 32 0 chr1 60413856 60413942 -136781490 - B1_Mur2 SINE Alu -5 144 50 1 1045 195 69 0 0 chr1 60414513 60414542 -136780890 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1045 1294 142 26 48 chr1 60414582 60414735 -136780697 + URR1A DNA MER1_type 1 156 -70 1 1045 1262 29 0 7 chr1 60414735 60414876 -136780556 + B1_Mus2 SINE Alu 2 141 -6 1 1045 378 0 0 0 chr1 60414878 60414920 -136780512 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1045 1294 142 26 48 chr1 60414920 60414993 -136780439 + URR1A DNA MER1_type 157 225 -1 1 1045 282 29 0 0 chr1 60415522 60415557 -136779875 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 1 1045 204 188 0 0 chr1 60415557 60415589 -136779843 + polypyrimidine Low_complexity Low_complexity 4 35 0 1 1045 794 177 49 7 chr1 60415589 60415731 -136779701 - B1_Mur3 SINE Alu 0 149 2 1 1045 291 250 28 0 chr1 60415732 60415804 -136779628 - L1M4 LINE L1 -2454 4190 4117 1 1045 231 225 89 11 chr1 60415903 60415993 -136779439 - L1M4 LINE L1 -706 5473 5377 1 1045 722 271 31 26 chr1 60416493 60416686 -136778746 - B3 SINE B2 -15 201 8 1 1045 265 288 122 0 chr1 60416688 60416827 -136778605 - L1M4 LINE L1 -763 5383 5228 1 1045 207 0 0 0 chr1 60417130 60417153 -136778279 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1045 1300 50 0 0 chr1 60417153 60417312 -136778120 - B2_Mm1a SINE B2 -33 160 2 1 1045 1090 182 16 67 chr1 60417669 60417922 -136777510 - Lx7 LINE L1 0 7696 7457 1 1045 313 297 167 33 chr1 60417975 60418215 -136777217 - L1M4 LINE L1 -5426 1116 845 1 1045 811 185 13 33 chr1 60418257 60418408 -136777024 + B1_Mur4 SINE Alu 3 150 0 1 1045 464 117 0 13 chr1 60418426 60418504 -136776928 + (GGGGA)n Simple_repeat Simple_repeat 5 81 0 1 1045 405 270 58 13 chr1 60418528 60418682 -136776750 - L1M4 LINE L1 -5758 784 624 1 1045 437 278 55 8 chr1 60418860 60418987 -136776445 - Tigger7 DNA MER2_type -2324 167 35 1 1045 304 276 0 0 chr1 60419042 60419118 -136776314 - ID4_ SINE ID -5 78 3 1 1045 832 289 93 4 chr1 60420327 60420553 -136774879 - B4A SINE B4 -43 249 4 1 1045 324 0 0 0 chr1 60420622 60420658 -136774774 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1045 324 0 0 0 chr1 60420658 60420693 -136774739 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1045 210 118 0 0 chr1 60421121 60421155 -136774277 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1045 697 182 83 8 chr1 60421157 60421290 -136774142 - B1_Mur1 SINE Alu 0 149 7 1 1045 250 317 0 35 chr1 60421370 60421455 -136773977 - B3A SINE B2 0 198 117 1 1045 737 220 121 15 chr1 60421392 60421589 -136773843 - B4 SINE B4 -2 290 91 1 1045 2325 150 56 2 chr1 60421592 60421987 -136773445 - MTC LTR MaLR 0 421 6 1 1045 980 135 21 0 chr1 60422009 60422150 -136773282 + B1_Mur4 SINE Alu 5 148 -2 1 1045 319 257 80 62 chr1 60422211 60422323 -136773109 - B3A SINE B2 -83 115 2 1 1045 241 306 69 0 chr1 60422327 60422399 -136773033 - B4 SINE B4 -207 85 9 1 1045 1049 113 7 7 chr1 60422471 60422614 -136772818 - B1_Mur3 SINE Alu -6 143 1 1 1045 705 235 105 21 chr1 60423042 60423233 -136772199 - ID_B1 SINE B4 -17 207 1 1 1045 772 125 130 23 chr1 60423595 60423726 -136771706 - B1_Mus1 SINE Alu -2 146 2 1 130 1286 200 0 5 chr1 60424131 60424347 -136771085 - B3 SINE B2 -1 215 1 1 1046 517 141 0 20 chr1 60424355 60424456 -136770976 + GA-rich Low_complexity Low_complexity 2 100 0 1 1046 390 312 31 0 chr1 60424555 60424651 -136770781 + B3A SINE B2 67 165 -33 1 1046 281 242 21 42 chr1 60424723 60424818 -136770614 + B4A SINE B4 3 95 -197 1 1046 326 333 208 0 chr1 60424829 60424973 -136770459 - B4A SINE B4 0 292 119 1 1046 2197 106 41 14 chr1 60425023 60425367 -136770065 - RLTR15 LTR ERVK -6 353 1 1 1046 327 286 0 45 chr1 60425492 60425580 -136769852 + PB1 SINE Alu 8 91 -36 1 1046 282 336 79 16 chr1 60425919 60426046 -136769386 - MER5B DNA MER1_type -43 135 1 1 1046 574 306 157 49 chr1 60426587 60427057 -136768375 - L2 LINE L2 -638 2781 2261 1 1046 239 187 12 74 chr1 60427057 60427138 -136768294 + B1F SINE Alu 73 148 -1 1 1046 197 182 0 18 chr1 60427140 60427196 -136768236 + GA-rich Low_complexity Low_complexity 2 56 0 1 1046 487 241 18 0 chr1 60427715 60427827 -136767605 - B1_Mur3 SINE Alu -1 148 35 1 1046 368 155 14 0 chr1 60427842 60427913 -136767519 + A-rich Low_complexity Low_complexity 4 75 0 1 1046 453 158 221 0 chr1 60428776 60428871 -136766561 + PB1D9 SINE Alu 5 120 0 1 1046 422 286 31 8 chr1 60429064 60429191 -136766241 - B3 SINE B2 -5 211 82 1 1046 421 200 25 0 chr1 60430352 60430432 -136765000 - RSINE1 SINE B4 -80 85 4 1 1046 411 274 9 26 chr1 60430539 60430655 -136764777 + PB1D10 SINE Alu 3 116 -1 1 1046 401 279 61 26 chr1 60430811 60430925 -136764507 - B3 SINE B2 -6 210 93 1 1046 961 201 207 0 chr1 60431157 60431336 -136764096 - B3 SINE B2 0 216 1 1 1046 281 213 16 0 chr1 60431342 60431403 -136764029 - B1_Mus2 SINE Alu 0 147 86 1 1046 513 292 46 0 chr1 60431624 60431754 -136763678 + RSINE1 SINE B4 2 137 -28 1 1046 438 20 0 0 chr1 60431755 60431806 -136763626 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1046 1190 79 18 12 chr1 60432058 60432224 -136763208 + B2_Mm2 SINE B2 1 167 -28 1 1046 2786 56 9 3 chr1 60432352 60432677 -136762755 - IAPLTR2b LTR ERVK 0 327 1 1 1046 183 100 0 0 chr1 60433203 60433233 -136762199 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1046 972 163 0 39 chr1 60433241 60433394 -136762038 + B1_Mur2 SINE Alu 1 147 -2 1 1046 249 230 0 0 chr1 60433425 60433499 -136761933 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1046 457 210 0 123 chr1 60433499 60433613 -136761819 - B3A SINE B2 -16 182 83 1 1046 1114 226 25 0 chr1 60433781 60433985 -136761447 + B3 SINE B2 1 209 -7 1 1046 26 0 0 0 chr1 60434022 60434048 -136761384 + AT_rich Low_complexity Low_complexity 1 26 0 1 1046 5995 137 100 24 chr1 60434136 60435013 -136760419 + RMER12 LTR ERVK 1 901 -421 1 1046 396 0 0 0 chr1 60435013 60435057 -136760375 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1046 216 0 0 0 chr1 60435057 60435080 -136760352 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1046 5995 137 100 24 chr1 60435080 60435329 -136760103 + RMER12 LTR ERVK 902 1213 -109 1 1046 723 302 71 3 chr1 60435438 60435803 -136759629 + L1ME1 LINE L1 5543 5945 -234 1 1046 546 204 62 0 chr1 60436009 60436122 -136759310 - B3 SINE B2 -94 122 3 1 1046 225 0 0 0 chr1 60436183 60436208 -136759224 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1046 656 247 205 20 chr1 60436404 60436755 -136758677 - Lx7 LINE L1 0 7696 7281 1 1046 330 278 35 57 chr1 60436963 60437104 -136758328 - RNLTR23 LTR ERVK -26 616 479 1 1046 1284 48 0 7 chr1 60437178 60437326 -136758106 + B1_Mus2 SINE Alu 1 147 0 1 1046 450 252 92 59 chr1 60437703 60437855 -136757577 + RSINE1 SINE B4 4 160 -5 1 1046 626 252 0 0 chr1 60438154 60438281 -136757151 + B1F SINE Alu 1 127 -22 1 1046 263 246 108 0 chr1 60438466 60438531 -136756901 + ID4_ SINE ID 2 73 -10 1 1046 635 90 10 0 chr1 60438635 60438735 -136756697 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1046 252 268 82 0 chr1 60438801 60438898 -136756534 - L1M5 LINE L1 -786 5454 5350 1 1046 1521 68 21 5 chr1 60439498 60439689 -136755743 - B2_Mm2 SINE B2 0 195 2 1 1046 531 232 0 20 chr1 60439691 60439792 -136755640 - PB1D10 SINE Alu -1 116 18 1 1046 967 151 14 0 chr1 60440246 60440385 -136755047 - B1_Mur4 SINE Alu -9 141 1 1 1046 225 0 0 0 chr1 60440501 60440526 -136754906 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1046 572 255 151 4 chr1 60440795 60441027 -136754405 - L1MD2 LINE L1 -466 5893 5628 1 1046 338 311 9 28 chr1 60441069 60441178 -136754254 + PB1D10 SINE Alu 3 109 -8 1 1046 575 306 69 4 chr1 60441576 60441822 -136753610 - Lx9 LINE L1 -173 7471 7210 1 1046 261 222 78 39 chr1 60442030 60442133 -136753299 - Charlie2b DNA MER1_type -102 2680 2574 1 1046 3454 131 28 13 chr1 60442159 60442700 -136752732 - RMER1B Other Other -2 1064 516 1 1046 2966 50 9 6 chr1 60443304 60443649 -136751783 - ORR1A1 LTR MaLR 0 346 1 1 1046 224 30 30 0 chr1 60444265 60444298 -136751134 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1046 1254 14 0 0 chr1 60444301 60444442 -136750990 - B1_Mus2 SINE Alu -6 141 1 1 1046 22 0 0 0 chr1 60444558 60444580 -136750852 + AT_rich Low_complexity Low_complexity 1 22 0 1 1046 962 141 0 7 chr1 60444598 60444741 -136750691 - B1_Mur4 SINE Alu -8 142 1 1 1046 276 291 25 0 chr1 60445377 60445456 -136749976 + ID4_ SINE ID 1 81 -2 1 1046 513 32 0 0 chr1 60445786 60445849 -136749583 + (GTTTG)n Simple_repeat Simple_repeat 1 63 0 1 1046 527 266 70 28 chr1 60445866 60446009 -136749423 + RSINE1 SINE B4 15 163 -2 1 1046 319 280 84 60 chr1 60446247 60446414 -136749018 - RLTR25B LTR ERVK -418 610 440 1 1046 725 78 171 38 chr1 60446327 60446463 -136748969 - B1_Mus1 SINE Alu -1 147 1 1 1046 477 268 167 8 chr1 60446914 60447166 -136748266 + B4 SINE B4 1 292 0 1 1046 4383 81 24 0 chr1 60447349 60447942 -136747490 - Lx LINE L1 0 6654 6048 1 1046 693 252 14 7 chr1 60447948 60448092 -136747340 + B1_Mur1 SINE Alu 4 148 -1 1 1046 297 0 0 0 chr1 60448176 60448209 -136747223 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1046 273 326 0 0 chr1 60448852 60448941 -136746491 + PB1D10 SINE Alu 27 115 -2 1 1046 5812 73 57 17 chr1 60449085 60450626 -136744806 - L1VL2 LINE L1 -1789 1826 211 1 1046 539 268 64 23 chr1 60450672 60450844 -136744588 + Lx8 LINE L1 7151 7329 -144 1 1046 772 226 0 0 chr1 60450844 60450990 -136744442 + B1_Mus1 SINE Alu 2 147 -1 1 1046 306 0 0 0 chr1 60451156 60451190 -136744242 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1046 627 246 81 8 chr1 60451223 60451378 -136744054 + B3A SINE B2 2 166 -50 1 1046 372 43 0 0 chr1 60451378 60451424 -136744008 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1046 568 272 74 40 chr1 60451424 60451444 -136743988 + B3 SINE B2 167 183 -33 1 1046 588 95 0 0 chr1 60451535 60451619 -136743813 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1046 316 330 21 0 chr1 60451773 60451867 -136743565 + B1F SINE Alu 2 97 -52 1 1046 180 0 0 0 chr1 60451952 60451972 -136743460 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1046 491 136 114 0 chr1 60451975 60452063 -136743369 - ID_B1 SINE B4 -15 209 112 1 1046 224 292 0 0 chr1 60452176 60452224 -136743208 + ID4_ SINE ID 35 82 -1 1 1046 221 333 0 111 chr1 60452224 60452257 -136743175 + ID_B1 SINE B4 36 107 -117 1 1046 456 158 41 11 chr1 60452442 60452546 -136742886 + PB1D10 SINE Alu 1 120 0 1 1046 957 74 96 0 chr1 60453027 60453162 -136742270 + B1_Mus1 SINE Alu 1 148 0 1 1046 306 132 0 0 chr1 60453925 60453978 -136741454 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 1 1046 577 238 97 101 chr1 60454028 60454133 -136741299 - RMER1C Other Other -18 1324 1211 1 1046 252 0 0 0 chr1 60454133 60454161 -136741271 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1046 577 238 97 101 chr1 60454161 60454312 -136741120 - RMER1C Other Other -132 1210 1069 1 1046 599 245 122 117 chr1 60454323 60454641 -136740791 - RMER1B Other Other -661 681 143 1 1046 4699 31 2 25 chr1 60454916 60455516 -136739916 + RLTR6_Mm LTR ERV1 1 586 -68 1 1046 496 250 14 14 chr1 60455512 60455650 -136739782 + B2_Mm2 SINE B2 32 169 -26 1 1046 610 173 35 8 chr1 60455711 60455850 -136739582 + B1_Mus2 SINE Alu 1 149 -1 1 1046 225 0 0 0 chr1 60455876 60455901 -136739531 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 1 1046 782 175 0 8 chr1 60456158 60456285 -136739147 - B1_Mur2 SINE Alu -22 127 2 1 1046 1213 86 23 11 chr1 60456462 60456479 -136738953 - B2_Mm1t SINE B2 -14 179 163 1 1046 315 0 0 0 chr1 60456479 60456514 -136738918 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 1046 1213 86 23 11 chr1 60456514 60456673 -136738759 - B2_Mm1t SINE B2 -31 162 1 1 1046 505 169 94 10 chr1 60456976 60457072 -136738360 - B1_Mus1 SINE Alu -44 104 1 1 1046 357 258 15 91 chr1 60457034 60457166 -136738266 + MLT1A LTR MaLR 1 122 -252 1 1046 299 299 27 151 chr1 60457315 60457500 -136737932 + MTE2a LTR MaLR 201 362 -17 1 1046 225 389 0 17 chr1 60457597 60457712 -136737720 + MLT1A LTR MaLR 249 361 -4 1 1046 257 309 15 0 chr1 60457838 60457906 -136737526 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 1 1046 274 313 0 0 chr1 60457845 60457912 -136737520 + ID4_ SINE ID 17 83 0 1 1046 889 226 19 93 chr1 60458074 60458342 -136737090 - MTD LTR MaLR -162 257 10 1 1046 261 288 62 0 chr1 60458474 60458554 -136736878 + MTD LTR MaLR 3 87 -334 1 1046 403 269 9 9 chr1 60458561 60458670 -136736762 + PB1D9 SINE Alu 3 111 -9 1 1046 2321 163 67 0 chr1 60458751 60459137 -136736295 - MTC LTR MaLR -9 412 1 1 1046 268 190 145 65 chr1 60459137 60459197 -136736235 + MTD LTR MaLR 148 212 -207 1 1046 610 146 0 11 chr1 60459195 60459285 -136736147 + 5S rRNA rRNA 1 89 -32 1 1046 654 239 140 18 chr1 60459246 60459468 -136735964 + MTD LTR MaLR 171 419 0 1 1046 317 43 21 0 chr1 60459868 60459915 -136735517 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1 1046 919 129 0 0 chr1 60459915 60460047 -136735385 - B1_Mur3 SINE Alu -9 140 9 1 1046 667 291 92 17 chr1 60460076 60460314 -136735118 + MER2 DNA MER2_type 90 345 0 1 1046 459 0 0 0 chr1 60460538 60460589 -136734843 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1046 1999 139 24 9 chr1 60460596 60460930 -136734502 + RLTR15 LTR ERVK 8 346 -13 1 1046 297 51 0 0 chr1 60460933 60460972 -136734460 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1046 328 336 38 69 chr1 60461134 60461157 -136734275 - B4 SINE B4 -86 206 113 1 1046 524 260 0 20 chr1 60461157 60461259 -136734173 - PB1D10 SINE Alu -17 100 1 1 1046 308 324 10 10 chr1 60461363 60461466 -136733966 - PB1 SINE Alu -24 103 1 1 1046 916 178 200 0 chr1 60461630 60461810 -136733622 + B3 SINE B2 1 216 0 1 1046 953 132 109 0 chr1 60461846 60461995 -136733437 + B2_Mm2 SINE B2 2 169 -26 1 1046 324 0 0 0 chr1 60461995 60462031 -136733401 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1046 953 132 109 0 chr1 60462031 60462055 -136733377 + B2_Mm2 SINE B2 170 193 -2 1 1046 25 31 0 0 chr1 60462084 60462116 -136733316 + AT_rich Low_complexity Low_complexity 1 32 0 1 1046 554 266 9 0 chr1 60462223 60462336 -136733096 + ID_B1 SINE B4 4 117 -107 1 1046 1528 181 24 73 chr1 60462619 60462947 -136732485 - ORR1C1 LTR MaLR -66 312 1 1 1046 259 260 47 94 chr1 60463358 60463464 -136731968 + RMER5 LTR ERV1 1 101 -433 1 1046 856 176 7 0 chr1 60463499 60463641 -136731791 - B1_Mur4 SINE Alu -7 143 1 1 1046 2242 214 59 43 chr1 60464266 60464775 -136730657 + RMER5 LTR ERV1 18 534 0 1 1046 571 269 74 79 chr1 60464788 60464978 -136730454 - B3A SINE B2 -9 189 1 1 1046 261 83 0 0 chr1 60465911 60465947 -136729485 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1 1046 267 79 0 0 chr1 60466601 60466639 -136728793 + (GGA)n Simple_repeat Simple_repeat 2 39 0 1 1046 219 258 30 20 chr1 60466762 60466861 -136728571 + (CGCGG)n Simple_repeat Simple_repeat 3 102 0 1 1046 1400 59 37 11 chr1 60468203 60468391 -136727041 + B2_Mm2 SINE B2 3 195 0 1 1046 684 241 49 93 chr1 60468509 60468756 -136726676 + MER2 DNA MER2_type 107 342 -3 1 1046 673 71 301 0 chr1 60469158 60469271 -136726161 - B1_Mus2 SINE Alu 0 147 1 1 1046 306 216 81 0 chr1 60469282 60469356 -136726076 - ID4_ SINE ID -2 81 2 1 1046 837 167 0 7 chr1 60469814 60469953 -136725479 - B1_Mur4 SINE Alu -10 140 3 1 1046 1088 82 7 7 chr1 60470220 60470367 -136725065 - B1_Mus2 SINE Alu 0 147 1 1 1046 375 296 154 58 chr1 60470629 60470837 -136724595 + B4A SINE B4 1 228 -64 1 1046 228 136 91 0 chr1 60471005 60471049 -136724383 - B1_Mur3 SINE Alu -7 142 95 1 1046 1127 77 0 0 chr1 60471104 60471247 -136724185 + B1_Mm SINE Alu 5 147 0 1 1046 231 167 0 0 chr1 60471247 60471289 -136724143 + A-rich Low_complexity Low_complexity 1 42 0 1 1046 291 267 76 90 chr1 60471289 60471433 -136723999 - RLTR25B LTR ERVK -445 583 442 1 1046 402 164 13 40 chr1 60471369 60471445 -136723987 - B1_Mus2 SINE Alu -45 102 29 1 1046 821 160 35 7 chr1 60471496 60471641 -136723791 + B1_Mur2 SINE Alu 1 149 0 1 1046 705 85 231 33 chr1 60472385 60472506 -136722926 - B1_Mus2 SINE Alu -1 146 2 1 1046 1006 222 14 19 chr1 60472920 60473131 -136722301 + B3 SINE B2 1 210 -6 1 1046 280 218 0 93 chr1 60473164 60473250 -136722182 + ID4_ SINE ID 5 82 -1 1 1046 391 242 45 19 chr1 60473314 60473470 -136721962 - L1ME1 LINE L1 -162 6017 5858 1 1046 655 354 98 20 chr1 60473625 60473982 -136721450 + LTR75 LTR ERVL 3 387 -175 1 1046 320 249 133 6 chr1 60474075 60474221 -136721211 - L1ME1 LINE L1 -2406 5636 5479 1 1046 317 282 60 151 chr1 60474239 60474357 -136721075 + L1MA9 LINE L1 3995 4099 -2044 1 1046 892 212 63 15 chr1 60474357 60474563 -136720869 - B3 SINE B2 0 216 1 1 1046 317 282 60 151 chr1 60474563 60474695 -136720737 + L1MA9 LINE L1 4100 4222 -1921 1 1046 285 98 0 0 chr1 60474709 60474750 -136720682 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1046 299 53 0 0 chr1 60474840 60474878 -136720554 - ORR1A3 LTR MaLR -9 317 280 1 1046 1035 244 148 17 chr1 60474878 60475344 -136720088 + L1MA9 LINE L1 4430 4956 -1184 1 1046 234 116 0 0 chr1 60475347 60475390 -136720042 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1046 1174 69 0 0 chr1 60475391 60475536 -136719896 - B1_Mus1 SINE Alu -2 146 2 1 1046 265 271 254 33 chr1 60475570 60475692 -136719740 + RSINE1 SINE B4 2 150 -15 1 1046 192 77 0 0 chr1 60475703 60475729 -136719703 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1046 9089 57 23 4 chr1 60475794 60477695 -136717737 - L1Md_F2 LINE L1 0 6582 4646 1 1046 332 224 18 61 chr1 60477723 60477837 -136717595 + L1MA9 LINE L1 5047 5155 -985 1 1046 434 205 136 0 chr1 60477888 60477987 -136717445 + B3 SINE B2 20 121 -95 1 1046 877 240 115 96 chr1 60478028 60478558 -136716874 + L1MA9 LINE L1 5370 5909 -403 1 1046 657 154 10 0 chr1 60478582 60478686 -136716746 - B1_Mur4 SINE Alu -19 131 27 1 1046 3105 49 23 5 chr1 60478950 60479339 -136716093 - MTA_Mm LTR MaLR 0 396 1 1 1046 212 0 0 35 chr1 60479723 60479752 -136715680 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1046 209 232 175 18 chr1 60479756 60479813 -136715619 + L2a LINE L2 3357 3422 -4 1 1046 686 103 256 0 chr1 60480267 60480384 -136715048 + B1_Mus1 SINE Alu 2 148 0 1 1046 1199 97 85 0 chr1 60480633 60480809 -136714623 + B2_Mm2 SINE B2 3 193 -2 1 1046 454 267 120 100 chr1 60481340 60481581 -136713851 - MT2A LTR ERVL -226 307 62 1 1046 546 252 32 0 chr1 60481508 60481631 -136713801 - MTE2b LTR MaLR -245 134 8 1 1046 3231 39 8 0 chr1 60481814 60482204 -136713228 - L1Md_F2 LINE L1 0 6582 6190 1 1046 261 306 42 0 chr1 60482301 60482373 -136713059 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 1 1046 392 130 143 0 chr1 60482391 60482468 -136712964 - URR1B DNA MER1_type 0 225 138 1 1046 649 176 80 0 chr1 60482474 60482585 -136712847 + B1_Mus1 SINE Alu 12 132 -16 1 1046 219 36 0 0 chr1 60482585 60482613 -136712819 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1046 649 176 80 0 chr1 60482613 60482626 -136712806 + B1_Mus1 SINE Alu 133 145 -3 1 1046 623 205 43 0 chr1 60482639 60482756 -136712676 - URR1B DNA MER1_type -104 121 1 1 1046 584 285 5 0 chr1 60483103 60483239 -136712193 - B1_Mur1 SINE Alu -1 148 9 1 1046 2171 170 45 8 chr1 60483499 60483897 -136711535 - MTC LTR MaLR 0 421 9 1 1046 1651 197 132 39 chr1 60483897 60484192 -136711240 - L1_Mur3 LINE L1 -923 4957 4639 1 1046 189 0 0 0 chr1 60484192 60484213 -136711219 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1046 1651 197 132 39 chr1 60484213 60484434 -136710998 - L1_Mur3 LINE L1 -1242 4638 4395 1 1046 1305 210 231 111 chr1 60484461 60484937 -136710495 - MT2A LTR ERVL 0 533 1 1 1046 549 140 114 0 chr1 60484937 60485051 -136710381 - L1_Mur3 LINE L1 -1520 4360 4234 1 1046 387 0 0 0 chr1 60485064 60485107 -136710325 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1046 809 184 27 13 chr1 60485120 60485269 -136710163 - B3A SINE B2 -47 151 1 1 1046 345 306 0 20 chr1 60485297 60485397 -136710035 - RMER15 LTR ERVL -138 437 340 1 1046 219 69 0 0 chr1 60486278 60486307 -136709125 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1046 530 276 9 0 chr1 60487132 60487248 -136708184 + RSINE1 SINE B4 3 119 -46 1 1046 865 203 7 0 chr1 60487326 60487474 -136707958 - B1_Mur2 SINE Alu 0 149 1 1 1046 210 118 0 0 chr1 60487532 60487566 -136707866 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1046 370 208 44 13 chr1 60487615 60487849 -136707583 + (TG)n Simple_repeat Simple_repeat 1 241 0 1 1046 398 345 14 7 chr1 60487875 60488015 -136707417 - B4A SINE B4 -8 284 144 1 1046 440 189 36 11 chr1 60488021 60488150 -136707282 + L1M3 LINE L1 4515 4654 -1486 1 1046 1391 168 167 10 chr1 60488355 60488649 -136706783 - ORR1B2 LTR MaLR -8 359 20 1 1046 285 29 0 0 chr1 60488649 60488683 -136706749 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1046 1302 44 0 0 chr1 60488683 60488842 -136706590 - B2_Mm1a SINE B2 -33 160 2 1 1046 455 254 140 22 chr1 60488873 60489102 -136706330 - L1M2 LINE L1 -2215 3928 3673 1 1046 321 247 22 56 chr1 60489158 60489248 -136706184 - PB1D10 SINE Alu 0 117 31 1 1046 2494 97 33 64 chr1 60489247 60489666 -136705766 - RLTR9B2 LTR ERVK -14 406 1 1 1046 568 285 49 20 chr1 60489692 60489996 -136705436 - L1M2 LINE L1 -2580 3563 3251 1 1046 28 0 0 0 chr1 60490632 60490660 -136704772 + AT_rich Low_complexity Low_complexity 1 28 0 1 1046 27 0 0 0 chr1 60491393 60491420 -136704012 + AT_rich Low_complexity Low_complexity 1 27 0 1 1046 605 203 0 25 chr1 60491571 60491692 -136703740 - PB1D9 SINE Alu 0 120 3 1 1046 216 0 0 0 chr1 60491693 60491717 -136703715 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1046 216 0 0 0 chr1 60491725 60491749 -136703683 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1046 970 195 11 31 chr1 60491842 60492033 -136703399 - ORR1C1 LTR MaLR 0 378 192 1 1046 1030 158 80 44 chr1 60492094 60492383 -136703049 - MTC LTR MaLR -23 398 5 1 1046 27 29 0 0 chr1 60492709 60492743 -136702689 + AT_rich Low_complexity Low_complexity 1 34 0 1 1046 26 64 0 0 chr1 60492988 60493035 -136702397 + AT_rich Low_complexity Low_complexity 1 47 0 1 1046 758 199 13 27 chr1 60493077 60493227 -136702205 - B1_Mur2 SINE Alu -1 148 1 1 1046 31 0 0 0 chr1 60493229 60493260 -136702172 + AT_rich Low_complexity Low_complexity 1 31 0 1 1046 654 309 48 19 chr1 60493285 60493555 -136701877 + B4 SINE B4 3 280 -12 1 1046 819 174 7 7 chr1 60495021 60495166 -136700266 - B1_Mur1 SINE Alu 0 149 5 1 1046 21 71 0 0 chr1 60495448 60495490 -136699942 + AT_rich Low_complexity Low_complexity 1 42 0 1 1046 372 259 97 77 chr1 60495913 60496068 -136699364 + L2a LINE L2 3266 3423 -3 1 1046 245 204 26 0 chr1 60496491 60496546 -136698886 + BC1_Mm scRNA scRNA 7 64 -88 1 1046 382 201 133 44 chr1 60496700 60496835 -136698597 - B1_Mus1 SINE Alu 0 148 2 1 1046 207 0 0 0 chr1 60497384 60497407 -136698025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1046 252 263 86 62 chr1 60497601 60497682 -136697750 - ID4_ SINE ID 0 83 1 1 1046 513 261 36 0 chr1 60497690 60497801 -136697631 - B1F SINE Alu -21 128 14 1 1046 652 264 58 68 chr1 60498046 60498253 -136697179 + RMER15 LTR ERVL 368 572 -3 1 1046 1455 63 16 0 chr1 60498375 60498564 -136696868 - B2_Mm1t SINE B2 0 193 2 1 1046 33 0 0 0 chr1 60498573 60498606 -136696826 + AT_rich Low_complexity Low_complexity 1 33 0 1 1046 237 269 0 0 chr1 60498641 60498719 -136696713 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1046 752 192 8 0 chr1 60499555 60499675 -136695757 + B1_Mur1 SINE Alu 2 122 -27 1 1046 25 31 0 0 chr1 60499677 60499709 -136695723 + AT_rich Low_complexity Low_complexity 1 32 0 1 1046 267 203 0 0 chr1 60501622 60501681 -136693751 + A-rich Low_complexity Low_complexity 1 59 0 1 1046 204 40 0 0 chr1 60502322 60502347 -136693085 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1046 939 134 7 20 chr1 60502602 60502754 -136692678 - B1_Mur4 SINE Alu 0 150 1 3 1046 903 107 62 28 chr1 60502912 60503056 -136692376 + B1_Mur4 SINE Alu 2 150 0 4 1046 204 111 0 0 chr1 60505114 60505150 -136690282 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1046 309 115 396 37 chr1 60505496 60505602 -136689830 - B2_Mm2 SINE B2 -5 190 47 6 1046 1084 136 11 17 chr1 60505634 60505813 -136689619 - B2_Mm1t SINE B2 -14 179 2 7 1046 735 256 22 11 chr1 60505915 60506097 -136689335 + B3A SINE B2 4 187 -11 8 1046 725 165 75 0 chr1 60506152 60506285 -136689147 + B1_Mur3 SINE Alu 1 143 -6 9 1046 249 33 0 0 chr1 60506289 60506319 -136689113 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 1 1046 342 235 56 47 chr1 60506353 60506460 -136688972 + PB1D10 SINE Alu 10 117 0 1 1046 1275 244 11 11 chr1 60507399 60507673 -136687759 + B4 SINE B4 1 274 -18 1 1046 1278 101 16 21 chr1 60507790 60507982 -136687450 - B2_Mm2 SINE B2 -4 191 1 1 1046 247 222 426 0 chr1 60508117 60508225 -136687207 + RSINE1 SINE B4 5 158 -7 1 1046 993 159 0 0 chr1 60508363 60508508 -136686924 - B1_Mur4 SINE Alu -5 145 1 1 1046 247 299 149 0 chr1 60509512 60509646 -136685786 - MLT1A1 LTR MaLR -4 361 208 1 1046 273 374 20 10 chr1 60509660 60509760 -136685672 - MLT1A1 LTR MaLR -253 155 55 1 1046 747 178 10 168 chr1 60509760 60509890 -136685542 - URR1A DNA MER1_type 0 226 95 1 1046 807 161 6 63 chr1 60509890 60510049 -136685383 + B1_Mur4 SINE Alu 1 150 0 1 1046 747 178 10 168 chr1 60510049 60510121 -136685311 - URR1A DNA MER1_type -132 94 56 1 1046 615 184 55 0 chr1 60510914 60511023 -136684409 + B1_Mus1 SINE Alu 5 119 -29 1 1046 892 203 66 47 chr1 60511639 60511851 -136683581 - B3 SINE B2 0 216 1 2 1046 670 182 31 16 chr1 60511921 60512049 -136683383 - B1_Mus2 SINE Alu -6 141 12 2 1046 2669 51 48 0 chr1 60512154 60512505 -136682927 - L1_Mus1 LINE L1 0 6567 6200 2 1046 309 135 0 0 chr1 60512831 60512883 -136682549 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1046 1170 61 0 0 chr1 60512886 60513033 -136682399 - B1_Mus2 SINE Alu 0 147 1 2 1046 216 86 0 0 chr1 60513277 60513312 -136682120 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1046 264 319 56 0 chr1 60513617 60513689 -136681743 - ID2 SINE ID -2 81 6 2 1046 1177 105 61 0 chr1 60514526 60514707 -136680725 + B2_Mm2 SINE B2 2 193 -2 2 1046 1411 73 0 25 chr1 60515599 60515796 -136679636 - B2_Mm2 SINE B2 -3 192 1 2 1046 1616 27 21 0 chr1 60516012 60516200 -136679232 - B2_Mm1a SINE B2 0 193 2 2 1046 858 216 99 5 chr1 60516324 60516515 -136678917 - B3 SINE B2 -5 211 3 3 1046 2419 97 11 3 chr1 60516612 60516965 -136678467 - L1_Mus3 LINE L1 -3 6635 6280 3 1046 233 333 38 13 chr1 60517028 60517107 -136678325 - ID4 SINE ID -2 81 1 3 1046 595 128 257 0 chr1 60517326 60517435 -136677997 + B1_Mur4 SINE Alu 1 137 -13 3 1046 2467 125 27 96 chr1 60518052 60518369 -136677063 - RMER6B LTR ERVK -7 454 171 3 1046 762 88 176 0 chr1 60518369 60518494 -136676938 - B1_Mus2 SINE Alu 0 147 1 3 1046 2467 125 27 96 chr1 60518494 60518664 -136676768 - RMER6B LTR ERVK -291 170 1 3 1046 4218 77 103 16 chr1 60519065 60519689 -136675743 - RLTR33 LTR ERVK 0 678 1 3 1046 835 222 86 15 chr1 60519919 60520116 -136675316 - B3 SINE B2 0 216 6 3 1046 614 167 111 22 chr1 60520136 60520271 -136675161 - B1_Mur4 SINE Alu -1 149 3 3 1046 201 39 0 0 chr1 60520524 60520550 -136674882 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1046 285 208 37 49 chr1 60521600 60521681 -136673751 + B3A SINE B2 2 81 -117 4 1046 588 95 91 45 chr1 60521797 60521929 -136673503 + RMER17B LTR ERVK 322 459 -499 4 1046 188 0 0 69 chr1 60521938 60521967 -136673465 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1046 255 245 0 0 chr1 60521997 60522046 -136673386 + tRNA-Ala-GCY_ tRNA tRNA 20 68 -7 4 1046 333 0 0 0 chr1 60522069 60522106 -136673326 + (CCA)n Simple_repeat Simple_repeat 2 38 0 4 1046 237 278 103 0 chr1 60522784 60522881 -136672551 + Tigger2b DNA MER2_type 365 471 -255 4 1046 225 290 65 0 chr1 60522924 60522942 -136672490 + ID4_ SINE ID 2 67 -16 4 1046 233 227 45 0 chr1 60522942 60522986 -136672446 + ID SINE ID 23 68 -156 4 1046 505 219 90 58 chr1 60523019 60523208 -136672224 + Tigger2b DNA MER2_type 529 723 -3 4 1046 381 286 10 10 chr1 60523349 60523448 -136671984 + L2a LINE L2 3301 3399 -27 4 1046 1366 172 56 0 chr1 60523489 60523739 -136671693 - MTC LTR MaLR -155 266 3 4 1046 1185 29 0 0 chr1 60524550 60524687 -136670745 + B1_Mus2 SINE Alu 1 137 -10 5 1046 216 0 0 0 chr1 60524687 60524711 -136670721 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1046 347 266 38 0 chr1 60524997 60525076 -136670356 - MARNA DNA Mariner -33 553 472 5 1046 226 260 24 83 chr1 60525314 60525352 -136670080 - MamGypLTR2b LTR Gypsy -635 287 253 5 1046 821 10 0 10 chr1 60525352 60525451 -136669981 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 5 1046 226 260 24 83 chr1 60525451 60525496 -136669936 - MamGypLTR2b LTR Gypsy -670 252 209 5 1046 358 238 152 0 chr1 60526993 60527092 -136668340 + PB1D7 SINE Alu 1 110 -10 5 1046 279 313 110 10 chr1 60528032 60528132 -136667300 - PB1D10 SINE Alu -1 116 7 5 1046 380 232 100 10 chr1 60528334 60528434 -136666998 + PB1D7 SINE Alu 1 109 -11 5 1046 1008 199 68 122 chr1 60528553 60528948 -136666484 - ORR1D1 LTR MaLR 0 374 1 5 1046 640 253 107 27 chr1 60528988 60529175 -136666257 + B3A SINE B2 2 203 -13 5 1046 305 322 49 33 chr1 60529205 60529327 -136666105 + L1MEc LINE L1 29 152 -6248 6 1046 396 0 0 0 chr1 60529597 60529641 -136665791 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1046 588 178 92 8 chr1 60529667 60529786 -136665646 - B1_Mur1 SINE Alu 0 149 21 6 1046 264 287 78 54 chr1 60530128 60530294 -136665138 - Charlie2b DNA MER1_type -802 1980 1811 6 1046 1705 16 0 0 chr1 60531442 60531634 -136663798 - B2_Mm1a SINE B2 0 193 2 6 1046 423 0 0 0 chr1 60531975 60532022 -136663410 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1046 277 189 0 39 chr1 60532087 60532164 -136663268 + CT-rich Low_complexity Low_complexity 1 74 0 6 1046 192 111 0 0 chr1 60535318 60535354 -136660078 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1046 1118 68 0 7 chr1 60535354 60535502 -136659930 - B1_Mm SINE Alu 0 147 1 6 1046 288 111 0 0 chr1 60539043 60539088 -136656344 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1046 1611 137 27 51 chr1 60539411 60539703 -136655729 + RLTR15 LTR ERVK 1 285 -74 7 1046 955 215 21 0 chr1 60540041 60540232 -136655200 - B3A SINE B2 -2 196 2 7 1046 201 121 0 0 chr1 60540499 60540532 -136654900 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 1046 207 0 0 0 chr1 60541931 60541954 -136653478 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1046 295 317 0 19 chr1 60544925 60545031 -136650401 + (CATA)n Simple_repeat Simple_repeat 3 106 0 7 1046 303 145 0 0 chr1 60546076 60546145 -136649287 + (TGG)n Simple_repeat Simple_repeat 1 69 0 7 1046 333 141 0 0 chr1 60546992 60547063 -136648369 + (GGA)n Simple_repeat Simple_repeat 1 71 0 7 1046 207 0 0 0 chr1 60548511 60548534 -136646898 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1046 297 250 14 14 chr1 60548538 60548611 -136646821 - ID4 SINE ID -8 75 3 7 1046 273 265 44 0 chr1 60548756 60548824 -136646608 + ID4_ SINE ID 3 73 -10 7 1046 938 141 0 45 chr1 60548923 60549079 -136646353 - B1_Mur3 SINE Alu 0 149 1 8 1046 1189 231 169 21 chr1 60549395 60549868 -136645564 + Lx8 LINE L1 6851 7393 -80 8 1046 24 0 0 0 chr1 60549889 60549913 -136645519 + AT_rich Low_complexity Low_complexity 1 24 0 8 1046 29 47 0 0 chr1 60551083 60551126 -136644306 + AT_rich Low_complexity Low_complexity 1 43 0 8 1046 471 231 53 107 chr1 60551251 60551401 -136644031 - B1_Mus1 SINE Alu -1 149 8 8 1046 482 279 193 15 chr1 60551406 60551675 -136643757 - L1MD3 LINE L1 -1024 6971 6655 8 1046 306 0 0 0 chr1 60552724 60552758 -136642674 + (CAA)n Simple_repeat Simple_repeat 2 35 0 8 1046 1360 80 16 16 chr1 60553730 60553921 -136641511 + B2_Mm2 SINE B2 2 192 -3 8 1046 436 316 121 6 chr1 60553933 60554146 -136641286 - Charlie1 DNA MER1_type -2541 240 3 8 1046 420 198 118 10 chr1 60554195 60554297 -136641135 + PB1D10 SINE Alu 5 117 0 8 1046 1301 57 57 0 chr1 60554573 60554748 -136640684 + B2_Mm2 SINE B2 1 185 -10 9 1046 233 301 204 0 chr1 60555025 60555118 -136640314 - PB1D10 SINE Alu -5 112 1 9 1047 404 219 55 102 chr1 60555949 60556076 -136639356 + ID_B1 SINE B4 82 202 -22 9 1047 378 258 70 99 chr1 60556076 60556091 -136639341 + B1F SINE Alu 1 138 -11 9 1047 216 0 0 0 chr1 60556092 60556116 -136639316 + (CAA)n Simple_repeat Simple_repeat 1 24 0 9 1047 719 214 289 4 chr1 60556979 60557204 -136638228 - B4A SINE B4 -2 290 2 9 1047 704 274 28 56 chr1 60558810 60559023 -136636409 - B4A SINE B4 -12 280 74 9 1047 614 261 102 0 chr1 60559184 60559360 -136636072 + B3A SINE B2 2 195 -3 9 1047 973 226 40 0 chr1 60562309 60562508 -136632924 - B3 SINE B2 -5 211 5 9 1047 2086 245 81 21 chr1 60562512 60563164 -136632268 + L1MC1 LINE L1 5381 6071 -262 9 1047 201 74 0 0 chr1 60563189 60563216 -136632216 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1047 189 273 76 0 chr1 60564391 60564457 -136630975 - L2 LINE L2 -2864 555 485 1 1047 640 151 9 0 chr1 60565037 60565143 -136630289 - B3 SINE B2 -109 107 1 1 1047 248 378 0 13 chr1 60565258 60565333 -136630099 + ID4_ SINE ID 1 74 -9 1 1047 186 103 0 0 chr1 60565561 60565590 -136629842 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1047 511 233 82 37 chr1 60565592 60565726 -136629706 - ID_B1 SINE B4 -7 217 78 1 1047 284 208 14 14 chr1 60568109 60568182 -136627250 - B3A SINE B2 -83 115 43 1 1047 1189 90 54 33 chr1 60568930 60569114 -136626318 - B2_Mm2 SINE B2 -7 188 1 1 1047 605 290 110 39 chr1 60569298 60569553 -136625879 - B4A SINE B4 -14 278 6 1 1047 527 314 37 25 chr1 60569688 60569851 -136625581 - RSINE1 SINE B4 0 165 1 1 1047 738 183 15 0 chr1 60569881 60570012 -136625420 + B1_Mur4 SINE Alu 3 135 -15 1 1047 477 50 0 0 chr1 60570047 60570107 -136625325 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 1 1047 478 302 69 56 chr1 60570280 60570555 -136624877 + B4A SINE B4 11 276 -16 1 1047 1349 75 38 0 chr1 60570664 60570850 -136624582 - B2_Mm1t SINE B2 0 193 1 1 1047 3344 79 7 5 chr1 60570852 60571298 -136624134 - L1_Mus1 LINE L1 -12 6555 6109 1 1047 1043 158 75 16 chr1 60571298 60571485 -136623947 + B3 SINE B2 19 216 0 1 1047 449 293 65 32 chr1 60571990 60572145 -136623287 + RSINE1 SINE B4 4 163 -2 1 1047 228 287 112 22 chr1 60573334 60573423 -136622009 + PB1D10 SINE Alu 10 106 -11 1 1047 352 242 116 40 chr1 60573622 60573820 -136621612 + MER20B DNA MER1_type 571 783 0 1 1047 261 57 0 0 chr1 60574001 60574036 -136621396 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1047 789 303 28 26 chr1 60574156 60574575 -136620857 + L1M2 LINE L1 4900 5291 -595 1 1047 347 240 151 72 chr1 60574571 60574602 -136620830 + L1_Mur3 LINE L1 5376 5402 -478 1 1047 836 168 66 0 chr1 60574602 60574739 -136620693 + B1_Mur4 SINE Alu 1 146 -4 1 1047 549 44 0 0 chr1 60574740 60574808 -136620624 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1 1047 347 240 151 72 chr1 60574808 60574940 -136620492 + L1_Mur3 LINE L1 5403 5554 -326 1 1047 297 51 0 0 chr1 60575542 60575581 -136619851 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1047 708 88 20 0 chr1 60575581 60575683 -136619749 - PB1D9 SINE Alu -8 112 9 1 1047 887 270 34 48 chr1 60576678 60576973 -136618459 - B4A SINE B4 -1 291 1 1 1047 1503 231 65 11 chr1 60577305 60577673 -136617759 + Lx7 LINE L1 7043 7430 -266 1 1047 30 45 0 0 chr1 60577764 60577808 -136617624 + AT_rich Low_complexity Low_complexity 1 44 0 1 1047 296 325 0 0 chr1 60578613 60578696 -136616736 - ID4_ SINE ID 0 83 1 1 1047 214 296 56 14 chr1 60578726 60578798 -136616634 - PB1D7 SINE Alu -2 118 44 1 1047 396 316 68 0 chr1 60578980 60579113 -136616319 + MER20 DNA MER1_type 75 216 -3 1 1047 369 322 8 0 chr1 60579159 60579277 -136616155 + HAL1 LINE L1 581 699 -1808 1 1047 234 250 24 59 chr1 60580006 60580084 -136615348 + ID4_ SINE ID 2 77 -6 1 1047 450 0 0 0 chr1 60580084 60580134 -136615298 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1047 800 172 60 22 chr1 60580330 60580514 -136614918 + B2_Mm2 SINE B2 5 195 0 1 1047 21 0 0 0 chr1 60580860 60580881 -136614551 + AT_rich Low_complexity Low_complexity 1 21 0 1 1047 231 335 105 74 chr1 60581837 60582027 -136613405 - MIRc SINE MIR -70 198 3 1 1047 1548 172 186 3 chr1 60583241 60583579 -136611853 + MTC LTR MaLR 14 413 -8 1 1047 334 330 67 72 chr1 60583913 60584073 -136611359 + B3A SINE B2 6 169 -29 1 1047 333 0 0 0 chr1 60584073 60584110 -136611322 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1047 334 330 67 72 chr1 60584110 60584142 -136611290 + B3A SINE B2 170 197 -1 1 1047 2489 132 12 33 chr1 60584413 60584835 -136610597 - MTC LTR MaLR -8 413 1 1 1047 268 253 125 52 chr1 60585441 60585537 -136609895 + MT2B LTR ERVL 155 257 -344 1 1047 654 148 83 0 chr1 60585465 60585573 -136609859 + B1_Mur3 SINE Alu 33 149 0 1 1047 398 299 106 18 chr1 60585661 60585831 -136609601 - ID_B1 SINE B4 -3 221 37 1 1047 1038 229 19 33 chr1 60585875 60585923 -136609509 - B3 SINE B2 -6 210 169 1 1047 2150 105 9 67 chr1 60585923 60586269 -136609163 + ORR1A3 LTR MaLR 1 326 0 1 1047 1038 229 19 33 chr1 60586269 60586432 -136609000 - B3 SINE B2 -48 168 2 1 1047 220 167 0 0 chr1 60587003 60587039 -136608393 - B2_Mm2 SINE B2 -94 101 66 1 1047 1211 108 11 0 chr1 60587077 60587253 -136608179 - B2_Mm1t SINE B2 -14 179 2 1 1047 1433 218 62 20 chr1 60587520 60587875 -136607557 - ORR1D2 LTR MaLR 0 370 1 1 1047 322 291 58 0 chr1 60587949 60588035 -136607397 + B4A SINE B4 10 100 -192 1 1047 364 248 158 0 chr1 60588001 60588102 -136607330 - RSINE1 SINE B4 -24 141 25 1 1047 2521 163 74 2 chr1 60588219 60588716 -136606716 + MT2A LTR ERVL 1 533 0 1 1047 613 233 208 0 chr1 60588869 60589028 -136606404 + ORR1D1 LTR MaLR 1 192 -182 1 1047 573 231 189 11 chr1 60589449 60589624 -136605808 + B4 SINE B4 1 206 -86 1 1047 206 250 15 30 chr1 60589889 60589955 -136605477 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1 1047 824 158 30 0 chr1 60590860 60590993 -136604439 - B1_Mus1 SINE Alu 0 148 12 1 1047 302 292 144 36 chr1 60590999 60591166 -136604266 + L2a LINE L2 2948 3132 -294 1 1047 722 218 15 0 chr1 60591282 60591415 -136604017 - B1_Mus2 SINE Alu -12 135 1 1 1047 1133 82 0 0 chr1 60591424 60591570 -136603862 - B1_Mus2 SINE Alu 0 147 2 1 1047 363 342 59 26 chr1 60591888 60592041 -136603391 + B3 SINE B2 47 204 -12 1 1047 369 0 0 0 chr1 60592068 60592109 -136603323 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1047 1106 58 0 0 chr1 60592109 60592247 -136603185 - B1_Mus2 SINE Alu -9 138 1 1 1047 624 262 51 65 chr1 60592281 60592497 -136602935 - ID_B1 SINE B4 -8 216 4 1 1047 187 330 135 18 chr1 60592558 60592669 -136602763 - MIRc SINE MIR -129 139 16 1 1047 533 241 45 0 chr1 60592864 60592976 -136602456 - RSINE1 SINE B4 -47 118 2 1 1047 27 29 0 0 chr1 60593728 60593762 -136601670 + AT_rich Low_complexity Low_complexity 1 34 0 1 1047 252 340 180 44 chr1 60594447 60594835 -136600597 - L2c LINE L2 -16 3371 2931 1 1047 1034 121 12 0 chr1 60594858 60595024 -136600408 - URR1A DNA MER1_type 0 226 59 1 1047 689 291 0 39 chr1 60595139 60595343 -136600089 - B3A SINE B2 0 198 3 1 1047 516 251 191 5 chr1 60595431 60595619 -136599813 + RMER21B LTR ERV1 345 567 -275 1 1047 477 0 0 0 chr1 60596195 60596248 -136599184 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1047 941 215 5 45 chr1 60596565 60596789 -136598643 + B3 SINE B2 2 216 0 1 1047 227 312 25 0 chr1 60596952 60597032 -136598400 + L1MC4 LINE L1 7106 7187 -855 1 1047 791 156 43 0 chr1 60597070 60597211 -136598221 - B1_Mur4 SINE Alu -2 148 2 1 1047 324 259 298 45 chr1 60597338 60597692 -136597740 + L1MC4 LINE L1 7345 7787 -255 1 1047 1341 256 63 81 chr1 60597777 60598519 -136596913 + L1MA4A LINE L1 5194 5930 -373 1 1047 245 267 83 8 chr1 60598856 60598977 -136596455 + L1MC4 LINE L1 7910 8039 -3 1 1047 2291 62 19 6 chr1 60599335 60599646 -136595786 + L1_Mus3 LINE L1 6319 6633 -5 1 1047 269 349 8 68 chr1 60599719 60599836 -136595596 + PB1D7 SINE Alu 1 110 -10 1 1047 22 35 0 0 chr1 60600121 60600150 -136595282 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 258 237 26 13 chr1 60600525 60600602 -136594830 - L1MB7 LINE L1 -49 6135 6058 1 1047 360 0 0 0 chr1 60600826 60600866 -136594566 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1047 433 257 92 0 chr1 60601584 60601693 -136593739 + RSINE1 SINE B4 28 146 -19 1 1047 366 203 0 0 chr1 60601850 60601909 -136593523 + ID_B1 SINE B4 147 205 -19 1 1047 345 259 37 12 chr1 60601882 60602009 -136593423 + B1_Mur1 SINE Alu 13 142 -7 1 1047 3426 53 84 33 chr1 60602661 60603148 -136592284 + RLTR1B LTR ERV1 1 512 0 1 1047 1825 114 0 29 chr1 60603149 60603421 -136592011 + RLTR1B-int LTR ERV1 2 265 -3034 1 1047 1403 123 81 147 chr1 60603403 60603994 -136591438 + RLTR1B-int LTR ERV1 119 583 -2716 1 1047 1239 72 30 0 chr1 60603992 60604158 -136591274 + RLTR1B-int LTR ERV1 1804 1974 -1325 1 1047 4775 150 68 27 chr1 60604155 60605201 -136590231 + RLTR1B-int LTR ERV1 2221 3295 -4 1 1047 3924 52 25 22 chr1 60605201 60605710 -136589722 + RLTR1B LTR ERV1 2 512 0 1 1047 447 19 0 0 chr1 60606694 60606746 -136588686 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1047 422 241 178 17 chr1 60606873 60606991 -136588441 - B1_Mur1 SINE Alu -7 142 6 1 1047 313 243 141 14 chr1 60607078 60607220 -136588212 + L1MCa LINE L1 1484 1643 -4865 1 1047 387 196 139 56 chr1 60607221 60607329 -136588103 + PB1D10 SINE Alu 1 117 0 1 1047 362 228 11 0 chr1 60607731 60607823 -136587609 + L1MCa LINE L1 1632 1724 -4784 1 1047 690 204 218 2 chr1 60607994 60608395 -136587037 + L1MCa LINE L1 1834 2320 -4188 1 1047 270 284 51 63 chr1 60608439 60608518 -136586914 + ID4 SINE ID 6 83 -69 1 1047 925 165 32 54 chr1 60608606 60608792 -136586640 + B3 SINE B2 30 211 -5 1 1047 966 268 125 9 chr1 60608793 60609226 -136586206 + L1MCa LINE L1 3648 4130 -2191 1 1047 388 299 80 7 chr1 60609421 60609559 -136585873 + Charlie12 DNA MER1_type 26 173 -2700 1 1047 687 231 27 0 chr1 60609438 60609585 -136585847 - RMER30 DNA MER1_type -42 160 10 1 1047 732 262 86 17 chr1 60609596 60609885 -136585547 + L1MC LINE L1 4653 4955 -1188 1 1047 745 240 23 78 chr1 60609891 60610108 -136585324 + B3 SINE B2 1 205 -11 1 1047 491 245 0 78 chr1 60610152 60610267 -136585165 + PB1D9 SINE Alu 2 107 -13 1 1047 842 148 229 0 chr1 60610956 60611139 -136584293 - URR1A DNA MER1_type 0 226 2 1 1047 21 0 0 0 chr1 60611250 60611271 -136584161 + AT_rich Low_complexity Low_complexity 1 21 0 1 1047 277 362 57 0 chr1 60611276 60611381 -136584051 + PB1D7 SINE Alu 9 119 -1 1 1047 667 227 129 47 chr1 60611444 60611615 -136583817 - B3 SINE B2 -24 192 8 1 1047 845 213 22 76 chr1 60612013 60612182 -136583250 + BGLII_Mus LTR ERVK 1 161 -261 2 1047 7453 48 21 0 chr1 60612182 60613057 -136582375 + L1Md_F3 LINE L1 5692 6584 0 2 1047 845 213 22 76 chr1 60613057 60613162 -136582270 + BGLII_Mus LTR ERVK 162 260 -162 2 1047 1168 123 41 63 chr1 60613153 60613422 -136582010 + BGLII LTR ERVK 159 421 0 2 1047 607 267 7 37 chr1 60613542 60613678 -136581754 + RSINE1 SINE B4 5 136 -29 2 1047 26 30 0 0 chr1 60613680 60613713 -136581719 + AT_rich Low_complexity Low_complexity 1 33 0 2 1047 1253 274 105 8 chr1 60613730 60614101 -136581331 - MTD LTR MaLR 0 419 13 2 1047 326 319 153 43 chr1 60614718 60615187 -136580245 + L1M5 LINE L1 4638 5158 -988 2 1047 298 357 0 48 chr1 60615197 60615300 -136580132 + ID_B1 SINE B4 82 179 -45 2 1047 422 292 0 9 chr1 60615209 60615319 -136580113 + B1F1 SINE Alu 11 119 -1 2 1047 232 273 136 7 chr1 60615326 60615466 -136579966 + L1M5 LINE L1 5200 5357 -789 2 1047 615 303 42 18 chr1 60615486 60615512 -136579920 + B3A SINE B2 1 25 -173 2 1047 1544 63 0 21 chr1 60615512 60615706 -136579726 - B2_Mm2 SINE B2 -4 191 2 2 1047 729 289 37 1 chr1 60615706 60615877 -136579555 + B3 SINE B2 26 206 -10 2 1047 360 209 75 0 chr1 60615917 60615984 -136579448 + ID4 SINE ID 2 73 -10 2 1047 34 0 0 0 chr1 60616220 60616254 -136579178 + AT_rich Low_complexity Low_complexity 1 34 0 2 1047 415 277 102 41 chr1 60616254 60616450 -136578982 - L1ME2z LINE L1 -560 5884 5677 2 1047 25 0 0 0 chr1 60617136 60617161 -136578271 + AT_rich Low_complexity Low_complexity 1 25 0 2 1047 319 273 239 0 chr1 60617230 60617318 -136578114 - PB1D10 SINE Alu -8 109 1 2 1047 1228 153 401 0 chr1 60617440 60617714 -136577718 + ORR1C2 LTR MaLR 1 384 0 2 1047 4705 215 137 33 chr1 60617714 60618954 -136576478 + ORR1C2-int LTR MaLR 2 1370 0 2 1047 2219 153 29 31 chr1 60618954 60619339 -136576093 + ORR1C2 LTR MaLR 1 384 0 2 1047 726 156 25 0 chr1 60619364 60619486 -136575946 + B1_Mur3 SINE Alu 17 141 -8 2 1047 396 211 0 0 chr1 60619848 60619924 -136575508 + B1F SINE Alu 74 149 0 2 1047 633 239 51 45 chr1 60619949 60620184 -136575248 + L1MB4 LINE L1 5911 6147 -36 2 1047 320 322 172 25 chr1 60620242 60620446 -136574986 + MIR SINE MIR 3 236 -26 2 1047 24 0 0 0 chr1 60620449 60620473 -136574959 + AT_rich Low_complexity Low_complexity 1 24 0 2 1047 288 273 30 0 chr1 60620601 60620667 -136574765 - ID2 SINE ID -10 73 6 2 1047 295 208 68 27 chr1 60620739 60620813 -136574619 - PB1D10 SINE Alu -1 116 40 2 1047 515 216 17 35 chr1 60621663 60621778 -136573654 - PB1D7 SINE Alu -7 113 1 2 1047 180 296 0 53 chr1 60622209 60622266 -136573166 - MIRc SINE MIR -51 217 164 2 1047 233 308 58 43 chr1 60624737 60624876 -136570556 + AmnSINE1 SINE SINE 276 416 -159 2 1047 200 322 74 57 chr1 60625535 60625657 -136569775 - L2c LINE L2 0 3387 3264 2 1047 2082 82 34 64 chr1 60625989 60626316 -136569116 - ORR1A4 LTR MaLR -8 321 5 2 1047 370 339 64 0 chr1 60626732 60626841 -136568591 + B4A SINE B4 97 212 -80 2 1047 315 0 0 0 chr1 60626863 60626898 -136568534 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1047 560 210 57 14 chr1 60626987 60627127 -136568305 + MT2A LTR ERVL 1 146 -387 2 1047 21 71 0 0 chr1 60627138 60627180 -136568252 + AT_rich Low_complexity Low_complexity 1 42 0 2 1047 272 246 90 0 chr1 60627246 60627337 -136568095 + PB1D10 SINE Alu 1 108 -41 2 1047 1698 260 162 21 chr1 60627338 60627967 -136567465 + Lx8 LINE L1 6736 7453 -20 2 1047 195 287 75 47 chr1 60629398 60629504 -136565928 + L2b LINE L2 3262 3370 -5 2 1047 1074 235 118 9 chr1 60630078 60630426 -136565006 - MLT1B LTR MaLR 0 390 5 2 1047 1049 77 27 40 chr1 60630534 60630682 -136564750 + B1_Mus1 SINE Alu 1 146 -2 2 1047 324 0 0 0 chr1 60630683 60630719 -136564713 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1047 514 122 0 18 chr1 60630716 60630825 -136564607 + (GAA)n Simple_repeat Simple_repeat 3 109 0 2 1047 1227 69 0 0 chr1 60631306 60631451 -136563981 + B1_Mus1 SINE Alu 4 148 0 2 1047 186 43 0 0 chr1 60631451 60631474 -136563958 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1047 305 261 53 21 chr1 60631655 60631749 -136563683 - RMER20A LTR ERVK 0 516 420 2 1047 297 271 52 118 chr1 60631884 60632039 -136563393 - RMER20A LTR ERVK -419 208 64 2 1047 625 303 89 21 chr1 60632414 60632650 -136562782 - MLT1D LTR MaLR -3 502 251 2 1047 261 270 24 80 chr1 60632865 60632990 -136562442 + MLT1B LTR MaLR 256 373 -17 2 1047 222 91 159 0 chr1 60633035 60633079 -136562353 + B1_Mur2 SINE Alu 99 149 0 2 1047 22 0 0 0 chr1 60633200 60633222 -136562210 + AT_rich Low_complexity Low_complexity 1 22 0 2 1047 317 159 0 0 chr1 60633311 60633374 -136562058 + CT-rich Low_complexity Low_complexity 87 149 0 2 1047 457 311 153 15 chr1 60633993 60634130 -136561302 + ID_B1 SINE B4 63 218 -6 2 1047 379 223 61 50 chr1 60634042 60634141 -136561291 + B1F SINE Alu 50 149 0 2 1047 3876 38 7 13 chr1 60634736 60635192 -136560240 + L1Md_F3 LINE L1 6131 6583 -1 2 1047 266 0 29 0 chr1 60636216 60636250 -136559182 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1047 938 183 86 0 chr1 60636481 60636667 -136558765 + URR1B DNA MER1_type 8 209 -16 2 1047 569 264 36 82 chr1 60636802 60637021 -136558411 - MamGypLTR1b LTR Gypsy -527 255 47 2 1047 714 235 0 0 chr1 60637202 60637338 -136558094 + B1F SINE Alu 9 144 -5 2 1047 796 103 0 44 chr1 60637355 60637538 -136557894 + (CAGAGA)n Simple_repeat Simple_repeat 2 176 0 2 1047 183 114 0 0 chr1 60637547 60637582 -136557850 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1047 613 150 24 0 chr1 60639518 60639645 -136555787 + GA-rich Low_complexity Low_complexity 1 130 0 2 1047 987 239 28 33 chr1 60640513 60640725 -136554707 + B3 SINE B2 1 211 -5 2 1047 473 145 0 0 chr1 60640864 60640940 -136554492 - PB1D9 SINE Alu -4 116 41 2 1047 1793 201 114 36 chr1 60641063 60641537 -136553895 + RLTR11A LTR ERVK 1 511 -17 2 1047 241 331 77 18 chr1 60641610 60641779 -136553653 + Lx8 LINE L1 6100 6278 -1195 2 1047 3652 136 38 22 chr1 60642020 60642658 -136552774 - RMER6A LTR ERVK 0 756 109 2 1047 3600 165 58 23 chr1 60642727 60643417 -136552015 - IAPEY3-int LTR ERVK 0 7680 6967 2 1047 389 300 110 113 chr1 60643562 60643841 -136551591 + MLT1J2 LTR MaLR 71 345 -103 2 1047 886 196 128 0 chr1 60643910 60644089 -136551343 - B3 SINE B2 -14 202 1 2 1047 359 182 133 26 chr1 60644263 60644376 -136551056 - L1MB1 LINE L1 -36 6132 6008 2 1047 656 24 0 12 chr1 60644432 60644515 -136550917 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 2 1047 503 272 22 11 chr1 60644527 60644678 -136550754 - B1F SINE Alu 0 149 1 2 1047 392 272 79 8 chr1 60644876 60645002 -136550430 - ID_B1 SINE B4 -9 215 81 2 1047 355 336 0 128 chr1 60645094 60645227 -136550205 - B1F1 SINE Alu -1 116 1 2 1047 21 0 0 0 chr1 60645346 60645367 -136550065 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 354 256 24 0 chr1 60645367 60645449 -136549983 - ID_B1 SINE B4 -2 222 139 2 1047 841 237 11 34 chr1 60645463 60645642 -136549790 - B3A SINE B2 -23 175 1 2 1047 192 360 130 0 chr1 60646381 60646481 -136548951 - L2b LINE L2 -23 3352 3240 2 1047 537 16 0 0 chr1 60646602 60646664 -136548768 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1047 468 51 0 0 chr1 60646664 60646723 -136548709 + (GGA)n Simple_repeat Simple_repeat 3 61 0 2 1047 414 0 0 0 chr1 60647077 60647123 -136548309 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1047 934 132 0 7 chr1 60647382 60647527 -136547905 - Lx5 LINE L1 -1250 5800 5657 2 1047 2336 201 48 23 chr1 60647525 60648008 -136547424 + Lx6 LINE L1 6966 7460 0 2 1047 648 178 100 36 chr1 60648558 60648698 -136546734 + B1_Mur4 SINE Alu 2 150 0 2 1047 761 91 163 16 chr1 60650354 60650477 -136544955 - B1_Mur4 SINE Alu -1 149 9 2 1047 1200 48 0 40 chr1 60650529 60650681 -136544751 - B1_Mm SINE Alu 0 147 2 2 1047 368 315 9 18 chr1 60650727 60650837 -136544595 - PB1D10 SINE Alu -8 109 1 2 1047 24 32 0 0 chr1 60651667 60651698 -136543734 + AT_rich Low_complexity Low_complexity 1 31 0 2 1047 22 0 0 0 chr1 60651811 60651833 -136543599 + AT_rich Low_complexity Low_complexity 1 22 0 2 1047 1203 239 115 12 chr1 60652026 60652356 -136543076 + ORR1D2 LTR MaLR 5 368 -2 2 1047 189 0 0 0 chr1 60654948 60654969 -136540463 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1047 506 252 199 0 chr1 60655374 60655505 -136539927 + RSINE1 SINE B4 3 159 -6 2 1047 339 319 112 6 chr1 60656428 60656598 -136538834 - MIRb SINE MIR -22 246 59 2 1047 860 259 94 26 chr1 60656658 60656924 -136538508 - B4A SINE B4 -7 285 2 2 1047 21 36 0 0 chr1 60657128 60657156 -136538276 + AT_rich Low_complexity Low_complexity 1 28 0 2 1047 447 19 0 0 chr1 60657960 60658012 -136537420 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 2 1047 396 118 23 23 chr1 60658084 60658171 -136537261 + CT-rich Low_complexity Low_complexity 3 89 0 2 1047 922 111 70 11 chr1 60658483 60658688 -136536744 + L1_Mus3 LINE L1 6350 6565 -1 2 1047 443 231 162 46 chr1 60658729 60658825 -136536607 + L1MA9 LINE L1 6028 6147 -165 2 1047 909 251 74 138 chr1 60658825 60659273 -136536159 + MTD LTR MaLR 1 419 0 2 1047 443 231 162 46 chr1 60659273 60659416 -136536016 + L1MA9 LINE L1 6148 6295 -17 2 1047 465 343 177 34 chr1 60659543 60659893 -136535539 - MARNA DNA Mariner -112 474 75 2 1047 378 281 57 19 chr1 60662029 60662134 -136533298 - PB1D10 SINE Alu -8 109 1 2 1047 472 202 179 72 chr1 60662607 60662794 -136532638 + B4 SINE B4 1 205 -87 2 1047 357 24 0 0 chr1 60662794 60662836 -136532596 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1047 472 202 179 72 chr1 60662836 60662899 -136532533 + B4 SINE B4 206 278 -14 2 1047 414 0 0 0 chr1 60664096 60664142 -136531290 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1047 506 193 0 151 chr1 60664142 60664301 -136531131 - Lx7 LINE L1 -281 7415 7281 3 1047 1103 275 83 9 chr1 60664489 60664816 -136530616 - MTE2b LTR MaLR -20 359 9 3 1047 923 143 15 0 chr1 60665457 60665590 -136529842 + B1_Mur3 SINE Alu 3 137 -12 3 1047 558 0 0 0 chr1 60665592 60665654 -136529778 + (CAAAA)n Simple_repeat Simple_repeat 3 64 0 3 1047 2144 219 128 34 chr1 60666724 60667316 -136528116 - Lx8 LINE L1 -361 7112 6465 3 1047 823 205 86 5 chr1 60668361 60668547 -136526885 - B3 SINE B2 -14 202 2 3 1047 271 360 58 15 chr1 60669555 60669726 -136525706 + MIR SINE MIR 14 202 -74 3 1047 1994 158 31 62 chr1 60670359 60670749 -136524683 - ORR1C1 LTR MaLR 0 378 1 3 1047 497 249 78 49 chr1 60671022 60671251 -136524181 + MIR SINE MIR 3 241 -27 3 1047 26 30 0 0 chr1 60671252 60671285 -136524147 + AT_rich Low_complexity Low_complexity 1 33 0 3 1047 828 279 81 7 chr1 60672145 60672467 -136522965 + L1MA4 LINE L1 5588 5927 -373 3 1047 390 162 0 0 chr1 60672467 60672541 -136522891 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1047 198 353 28 56 chr1 60673476 60673620 -136521812 + MIR3 SINE MIR 12 151 -57 3 1047 189 0 0 0 chr1 60673700 60673721 -136521711 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1047 22 0 0 0 chr1 60674144 60674166 -136521266 + AT_rich Low_complexity Low_complexity 1 22 0 3 1047 1368 92 16 0 chr1 60674229 60674413 -136521019 + B2_Mm2 SINE B2 2 188 -7 3 1047 245 312 12 24 chr1 60674572 60674654 -136520778 - ID4_ SINE ID -1 82 2 3 1047 224 167 0 0 chr1 60674711 60674753 -136520679 - ID4_ SINE ID -41 42 1 3 1047 222 118 0 0 chr1 60675108 60675142 -136520290 + (TTC)n Simple_repeat Simple_repeat 2 35 0 3 1047 714 257 50 135 chr1 60675679 60675976 -136519456 - B4 SINE B4 0 292 21 3 1047 1178 241 103 8 chr1 60676265 60676625 -136518807 - L1MB7 LINE L1 -70 6114 5721 3 1047 409 294 33 54 chr1 60676729 60677045 -136518387 - B4 SINE B4 -18 274 3 3 1047 252 266 73 73 chr1 60677049 60677199 -136518233 + ORR1E LTR MaLR 43 192 -167 3 1047 245 327 14 12 chr1 60677279 60677383 -136518049 + ORR1E LTR MaLR 275 379 0 3 1047 502 276 32 0 chr1 60677534 60677657 -136517775 + MTEb LTR MaLR 79 205 -174 3 1047 364 298 107 40 chr1 60677661 60677936 -136517496 - ORR1D2 LTR MaLR -4 366 16 3 1047 580 227 123 7 chr1 60677928 60678083 -136517349 + MTEb LTR MaLR 199 371 -8 3 1047 948 197 57 21 chr1 60678283 60678475 -136516957 - B3 SINE B2 -16 200 2 3 1047 382 283 39 35 chr1 60678627 60678755 -136516677 - PB1D7 SINE Alu -8 112 2 3 1047 369 0 0 0 chr1 60679187 60679228 -136516204 + (TATG)n Simple_repeat Simple_repeat 2 42 0 3 1047 472 285 133 40 chr1 60679246 60679370 -136516062 - RSINE1 SINE B4 0 165 28 3 1047 1994 199 163 7 chr1 60679370 60679775 -136515657 + MT2A LTR ERVL 1 476 -57 3 1047 216 111 0 0 chr1 60679775 60679811 -136515621 + (TATG)n Simple_repeat Simple_repeat 1 36 0 3 1047 1994 199 163 7 chr1 60679811 60679866 -136515566 + MT2A LTR ERVL 477 533 0 3 1047 472 285 133 40 chr1 60679866 60679891 -136515541 - RSINE1 SINE B4 -138 27 3 3 1047 180 273 0 0 chr1 60680540 60680584 -136514848 + L3 LINE CR1 3688 3731 -758 3 1047 227 123 0 34 chr1 60680681 60680740 -136514692 + (CAA)n Simple_repeat Simple_repeat 2 58 0 3 1047 282 155 324 0 chr1 60680761 60680832 -136514600 + L1MC1 LINE L1 6240 6333 0 3 1047 363 274 91 70 chr1 60681007 60681337 -136514095 - RLTR15 LTR ERVK -13 346 10 3 1047 212 31 62 0 chr1 60681437 60681469 -136513963 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1047 1680 31 0 0 chr1 60681721 60681912 -136513520 + B2_Mm1a SINE B2 1 191 -2 3 1047 261 0 0 0 chr1 60681991 60682020 -136513412 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1047 243 0 0 0 chr1 60682020 60682046 -136513386 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1047 255 61 0 0 chr1 60682047 60682080 -136513352 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3 1047 530 226 8 17 chr1 60682106 60682223 -136513209 + PB1D10 SINE Alu 1 116 -1 3 1047 2319 142 93 59 chr1 60683630 60684137 -136511295 + RLTR28 LTR ERVL 1 524 0 3 1047 243 146 0 0 chr1 60684941 60684982 -136510450 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1047 445 212 52 17 chr1 60685330 60685445 -136509987 - PB1D9 SINE Alu 0 120 2 3 1047 370 324 84 4 chr1 60685519 60685745 -136509687 + MIR SINE MIR 13 256 -6 3 1047 304 303 118 46 chr1 60685907 60686170 -136509262 + B4 SINE B4 1 282 -10 3 1048 197 294 0 4 chr1 60686934 60687005 -136508427 - MIRc SINE MIR -89 173 104 3 1048 1780 125 45 16 chr1 60687124 60687433 -136507999 - MTC LTR MaLR 0 421 104 3 1048 36124 64 4 5 chr1 60687439 60693648 -136501784 - L1Md_F2 LINE L1 0 6585 285 3 1048 517 170 0 0 chr1 60693651 60693745 -136501687 - MTC LTR MaLR -327 94 1 3 1048 1092 264 112 36 chr1 60693766 60693969 -136501463 + MLT2B2 LTR ERVL 2 220 -295 3 1048 321 26 0 0 chr1 60693969 60694007 -136501425 + (TCC)n Simple_repeat Simple_repeat 2 39 0 3 1048 1092 264 112 36 chr1 60694007 60694188 -136501244 + MLT2B2 LTR ERVL 221 415 -100 3 1048 187 79 53 0 chr1 60694197 60694235 -136501197 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 3 1048 189 0 0 0 chr1 60694242 60694263 -136501169 + (TTC)n Simple_repeat Simple_repeat 3 23 0 3 1048 225 0 0 0 chr1 60694263 60694288 -136501144 + (CAT)n Simple_repeat Simple_repeat 3 27 0 3 1048 608 188 7 0 chr1 60694419 60694557 -136500875 - Lx2 LINE L1 0 6997 6859 3 1048 207 333 50 29 chr1 60694819 60694958 -136500474 - MIRb SINE MIR -67 195 54 3 1048 222 0 79 0 chr1 60695315 60695353 -136500079 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1048 300 53 0 0 chr1 60695629 60695667 -136499765 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 3 1048 294 106 0 0 chr1 60696763 60696810 -136498622 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1048 663 259 0 0 chr1 60697399 60697538 -136497894 - B1_Mur1 SINE Alu 0 149 11 3 1048 26 64 0 0 chr1 60697944 60697991 -136497441 + AT_rich Low_complexity Low_complexity 1 47 0 3 1048 382 326 94 73 chr1 60698041 60698107 -136497325 - Lx9 LINE L1 -85 7388 7330 3 1048 468 0 0 0 chr1 60698107 60698159 -136497273 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1048 843 266 87 19 chr1 60698159 60698483 -136496949 - Lx9 LINE L1 -186 7458 7000 3 1048 424 310 14 14 chr1 60699689 60699833 -136495599 - RSINE1 SINE B4 -2 163 20 3 1048 282 321 51 94 chr1 60700445 60700720 -136494712 - LTR78 LTR ERV1 -1041 263 1 3 1048 2302 159 46 24 chr1 60701511 60701923 -136493509 + MTC LTR MaLR 1 421 0 3 1048 375 237 11 21 chr1 60702960 60703055 -136492377 - MER115 DNA Tip100 -9 684 591 3 1048 894 258 105 4 chr1 60703075 60703351 -136492081 + L1MB3 LINE L1 5708 6011 -172 3 1048 208 130 43 0 chr1 60703352 60703398 -136492034 + CT-rich Low_complexity Low_complexity 2 49 0 3 1048 505 98 346 19 chr1 60703399 60703503 -136491929 - B1_Mm SINE Alu -5 142 5 3 1048 207 42 20 78 chr1 60703514 60703565 -136491867 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1048 252 189 0 0 chr1 60703619 60703672 -136491760 + L1MB3 LINE L1 6103 6155 -16 3 1048 387 0 0 0 chr1 60703688 60703731 -136491701 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 3 1048 475 278 1 0 chr1 60704005 60704122 -136491310 - PB1D10 SINE Alu 0 117 2 3 1048 428 206 30 30 chr1 60704609 60704709 -136490723 + RSINE1 SINE B4 3 102 -63 3 1048 209 342 83 0 chr1 60706399 60706519 -136488913 + MIRc SINE MIR 69 198 -70 3 1048 272 350 46 40 chr1 60706617 60706790 -136488642 - MER46C DNA MER2_type -50 288 115 3 1048 730 283 124 68 chr1 60706809 60707283 -136488149 + MLT1D LTR MaLR 5 505 0 3 1048 567 322 77 58 chr1 60707720 60708096 -136487336 + MLT1A1 LTR MaLR 3 385 -23 3 1048 213 154 0 0 chr1 60708146 60708185 -136487247 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1048 371 294 16 0 chr1 60708800 60708926 -136486506 + L1ME4a LINE L1 5767 5894 -230 3 1048 350 260 70 0 chr1 60709231 60709331 -136486101 - PB1D10 SINE Alu -8 109 3 3 1048 256 119 0 0 chr1 60709913 60709955 -136485477 + L2c LINE L2 3341 3382 -5 3 1048 1157 275 52 33 chr1 60709986 60710444 -136484988 - MLT1C LTR MaLR 0 467 1 3 1048 213 108 0 0 chr1 60710938 60710975 -136484457 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1048 591 227 8 0 chr1 60711011 60711130 -136484302 - RSINE1 SINE B4 -35 130 11 3 1048 1561 206 161 29 chr1 60711290 60711736 -136483696 + RMER15 LTR ERVL 71 575 0 3 1048 593 199 309 51 chr1 60713671 60713888 -136481544 - B4 SINE B4 -16 276 4 3 1048 22 0 0 0 chr1 60714221 60714243 -136481189 + AT_rich Low_complexity Low_complexity 1 22 0 3 1048 325 304 87 32 chr1 60714992 60715180 -136480252 - MIR SINE MIR -3 259 66 3 1048 560 278 79 59 chr1 60715203 60715493 -136479939 - ORR1E LTR MaLR -4 355 60 3 1048 249 33 0 0 chr1 60716779 60716809 -136478623 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 3 1048 1062 93 0 0 chr1 60717359 60717499 -136477933 - B1_Mus2 SINE Alu -6 141 2 3 1048 525 110 0 0 chr1 60718221 60718303 -136477129 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1048 333 0 0 0 chr1 60718423 60718460 -136476972 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1048 25 0 0 0 chr1 60718545 60718570 -136476862 + AT_rich Low_complexity Low_complexity 1 25 0 3 1048 216 86 0 0 chr1 60719719 60719754 -136475678 + (CCA)n Simple_repeat Simple_repeat 3 37 0 3 1048 688 226 48 72 chr1 60719995 60720162 -136475270 + RSINE1 SINE B4 3 165 0 3 1048 26 0 0 0 chr1 60720166 60720192 -136475240 + AT_rich Low_complexity Low_complexity 1 26 0 3 1048 237 263 0 0 chr1 60720514 60720613 -136474819 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1048 2627 111 44 9 chr1 60720618 60721053 -136474379 + RMER6B LTR ERVK 1 450 -11 4 1048 360 0 0 0 chr1 60721053 60721093 -136474339 + (CAA)n Simple_repeat Simple_repeat 2 41 0 4 1048 312 27 0 0 chr1 60721093 60721130 -136474302 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1048 212 194 0 0 chr1 60721595 60721631 -136473801 + T-rich Low_complexity Low_complexity 1 36 0 4 1048 207 61 19 58 chr1 60721690 60721702 -136473730 + (TTTTTG)n Simple_repeat Simple_repeat 4 15 0 4 1048 1132 90 0 0 chr1 60721702 60721847 -136473585 - B1_Mus2 SINE Alu -2 145 1 4 1048 207 61 19 58 chr1 60721847 60721886 -136473546 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1048 353 253 138 61 chr1 60721894 60722075 -136473357 - B3A SINE B2 0 198 4 4 1048 191 81 0 51 chr1 60722839 60722878 -136472554 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 1048 28 48 0 0 chr1 60723144 60723186 -136472246 + AT_rich Low_complexity Low_complexity 1 42 0 4 1048 266 270 155 43 chr1 60723800 60723916 -136471516 + L2c LINE L2 3186 3314 -73 4 1048 286 342 92 0 chr1 60724134 60724286 -136471146 + MIRb SINE MIR 95 260 -8 4 1048 441 0 0 0 chr1 60725617 60725666 -136469766 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1048 657 0 0 0 chr1 60725666 60725739 -136469693 + (TTC)n Simple_repeat Simple_repeat 2 74 0 4 1048 492 18 0 0 chr1 60725848 60725905 -136469527 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 4 1048 184 361 104 23 chr1 60726321 60726494 -136468938 - MIRb SINE MIR -15 253 67 4 1048 358 266 77 92 chr1 60726551 60726812 -136468620 - Lx8 LINE L1 -29 7444 7188 4 1048 1141 74 0 0 chr1 60728556 60728704 -136466728 + B1_Mus1 SINE Alu 1 148 0 4 1048 198 336 215 8 chr1 60729035 60729281 -136466151 - L2a LINE L2 -14 3412 3116 4 1048 225 265 0 0 chr1 60729312 60729395 -136466037 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1048 286 347 99 5 chr1 60729395 60729618 -136465814 - L2a LINE L2 -341 3078 2835 4 1048 443 259 72 0 chr1 60729633 60729772 -136465660 - Lx5 LINE L1 0 7050 6902 4 1048 5993 165 49 16 chr1 60729769 60730787 -136464645 - Lx5 LINE L1 -253 6797 5741 4 1048 4492 101 79 19 chr1 60730787 60730799 -136464633 - Lx LINE L1 -5 6649 6640 4 1048 1115 83 7 0 chr1 60730799 60730944 -136464488 - B1_Mus1 SINE Alu -1 147 2 4 1048 4492 101 79 19 chr1 60730944 60731020 -136464412 - Lx LINE L1 -15 6639 6567 4 1048 417 20 0 0 chr1 60731020 60731070 -136464362 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 4 1048 4492 101 79 19 chr1 60731070 60731678 -136463754 - Lx LINE L1 -88 6566 5912 4 1048 23256 137 34 10 chr1 60731678 60733766 -136461666 - Lx5 LINE L1 -1310 5740 3124 4 1048 441 0 0 0 chr1 60733766 60733815 -136461617 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1048 23256 137 34 10 chr1 60733815 60734879 -136460553 - Lx5 LINE L1 -2754 3123 2055 4 1048 438 53 0 0 chr1 60734879 60734936 -136460496 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1048 23256 145 34 13 chr1 60734936 60736089 -136459343 - Lx5 LINE L1 -3823 2054 889 4 1048 322 319 170 0 chr1 60736497 60736632 -136458800 - L2a LINE L2 -684 2735 2578 4 1048 1355 223 45 101 chr1 60736906 60737400 -136458032 - RMER4A LTR ERVK 0 466 1 4 1048 524 270 14 28 chr1 60737865 60738006 -136457426 + ID_B1 SINE B4 73 211 -13 4 1048 275 327 50 0 chr1 60738155 60738256 -136457176 + MLT1H2 LTR MaLR 59 164 -325 4 1048 1306 43 0 0 chr1 60738768 60738929 -136456503 - L1Md_T LINE L1 0 6582 6422 4 1048 371 272 138 20 chr1 60739390 60739585 -136455847 - RMER20B LTR ERVK -265 362 145 4 1048 231 222 0 0 chr1 60740079 60740133 -136455299 + T-rich Low_complexity Low_complexity 1 54 0 4 1048 438 20 0 0 chr1 60740136 60740187 -136455245 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1048 347 96 80 27 chr1 60740206 60740281 -136455151 + Lx7 LINE L1 7610 7688 -8 4 1048 879 184 207 0 chr1 60740293 60740472 -136454960 - B3 SINE B2 0 216 1 4 1048 25 0 0 0 chr1 60740498 60740523 -136454909 + AT_rich Low_complexity Low_complexity 1 25 0 4 1048 962 239 28 77 chr1 60741230 60741516 -136453916 + B4 SINE B4 10 281 -11 4 1048 8450 122 21 17 chr1 60741940 60742514 -136452918 - Lx3C LINE L1 -79 6897 6330 4 1048 2974 40 0 0 chr1 60742514 60742860 -136452572 + ORR1A1 LTR MaLR 1 346 0 4 1048 8450 119 12 10 chr1 60742860 60743711 -136451721 - Lx3C LINE L1 -647 6329 5470 4 1048 5888 127 40 3 chr1 60743705 60744657 -136450775 + L1_Mur1 LINE L1 3754 4740 -1146 4 1048 39040 11 0 7 chr1 60744664 60749873 -136445559 + L1Md_A LINE L1 422 5586 -297 4 1048 8885 18 0 0 chr1 60749873 60750869 -136444563 + L1Md_A LINE L1 5587 6582 0 4 1048 186 150 0 0 chr1 60750891 60750931 -136444501 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1048 5034 99 6 11 chr1 60750959 60751691 -136443741 + L1_Mur1 LINE L1 4735 5462 -424 4 1048 265 350 79 17 chr1 60752427 60752604 -136442828 + MIR SINE MIR 5 192 -70 4 1048 610 279 84 81 chr1 60752612 60752885 -136442547 + B4A SINE B4 8 281 -11 4 1048 432 0 0 0 chr1 60752899 60752947 -136442485 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1048 513 255 27 14 chr1 60753023 60753170 -136442262 - MER5A1 DNA MER1_type -5 161 13 4 1048 588 281 12 12 chr1 60753191 60753360 -136442072 - MER5A DNA MER1_type -20 169 1 4 1048 1109 229 36 21 chr1 60753790 60754071 -136441361 - B4A SINE B4 -6 286 2 4 1048 1424 180 122 3 chr1 60754466 60754795 -136440637 + ORR1D1 LTR MaLR 7 374 0 4 1048 186 143 0 0 chr1 60755027 60755062 -136440370 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1048 270 0 0 0 chr1 60755079 60755109 -136440323 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1048 968 228 179 6 chr1 60755297 60755615 -136439817 - MTE2b LTR MaLR -1 378 6 4 1048 1371 70 49 0 chr1 60755859 60756044 -136439388 + B2_Mm2 SINE B2 1 194 -1 4 1048 877 251 119 76 chr1 60756426 60756780 -136438652 - ORR1D2 LTR MaLR 0 370 2 4 1048 717 213 340 30 chr1 60756820 60756985 -136438447 + B4A SINE B4 9 224 -68 4 1048 1368 61 22 11 chr1 60756985 60757167 -136438265 + B2_Mm2 SINE B2 4 187 -8 4 1048 717 232 26 42 chr1 60757167 60757235 -136438197 + B4A SINE B4 225 292 0 4 1048 286 319 8 8 chr1 60757235 60757352 -136438080 + (CA)n Simple_repeat Simple_repeat 1 117 0 4 1048 2408 93 6 6 chr1 60757889 60758214 -136437218 + ORR1A2 LTR MaLR 3 327 0 4 1048 490 103 23 0 chr1 60758819 60758906 -136436526 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 4 1048 509 250 56 8 chr1 60759098 60759223 -136436209 - B1F SINE Alu -18 131 1 4 1048 1396 80 43 0 chr1 60760570 60760757 -136434675 + B2_Mm2 SINE B2 1 195 0 4 1048 235 96 39 0 chr1 60762096 60762148 -136433284 + (TTTTTG)n Simple_repeat Simple_repeat 4 57 0 4 1048 222 37 0 0 chr1 60762539 60762566 -136432866 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1048 2370 169 31 17 chr1 60762610 60763025 -136432407 - MTC LTR MaLR 0 421 1 4 1048 210 356 11 0 chr1 60763192 60763279 -136432153 + L2c LINE L2 3243 3330 -57 4 1048 5193 49 5 2 chr1 60764322 60764958 -136430474 + L1Md_F3 LINE L1 5933 6570 -14 4 1048 682 201 0 29 chr1 60764972 60765146 -136430286 + C-rich Low_complexity Low_complexity 3 171 0 4 1048 189 107 0 0 chr1 60765359 60765387 -136430045 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1048 316 240 69 10 chr1 60765416 60765517 -136429915 + MER106B DNA MER1_type 917 1023 -36 4 1048 1152 75 0 0 chr1 60765573 60765720 -136429712 - B1_Mus1 SINE Alu 0 148 2 4 1048 409 268 68 31 chr1 60766217 60766379 -136429053 + Tigger13a DNA MER2_type 174 341 -430 4 1048 488 209 0 42 chr1 60766525 60766690 -136428742 + (CATA)n Simple_repeat Simple_repeat 3 160 0 4 1048 1017 80 72 0 chr1 60766765 60766903 -136428529 + B1_Mus1 SINE Alu 1 148 0 4 1048 226 190 17 17 chr1 60766994 60767053 -136428379 - L2 LINE L2 -2447 972 914 4 1048 2630 135 9 19 chr1 60767146 60767568 -136427864 + MTC LTR MaLR 1 418 -3 4 1048 1931 53 0 0 chr1 60767568 60767811 -136427621 - L1Md_F2 LINE L1 -1530 4353 4111 4 1048 9837 54 8 0 chr1 60767809 60769029 -136426403 + L1Md_F2 LINE L1 4357 5586 -297 4 1048 7825 66 0 4 chr1 60769029 60770017 -136425415 + L1Md_F2 LINE L1 5587 6570 -12 4 1048 456 280 25 17 chr1 60771145 60771265 -136424167 - B1F1 SINE Alu -27 122 2 4 1048 456 347 53 23 chr1 60771269 60771570 -136423862 - LTR33 LTR ERVL -53 462 153 4 1048 444 278 0 18 chr1 60771750 60771860 -136423572 - PB1D10 SINE Alu 0 117 10 4 1048 231 200 22 0 chr1 60771878 60771923 -136423509 + C-rich Low_complexity Low_complexity 6 51 0 4 1048 435 329 0 7 chr1 60772525 60772669 -136422763 - MIR SINE MIR -107 155 13 4 1048 204 196 19 38 chr1 60772680 60772733 -136422699 - L2c LINE L2 -111 3276 3225 4 1048 263 309 53 0 chr1 60774331 60774425 -136421007 + MLT1J LTR MaLR 122 220 -292 4 1048 522 0 0 0 chr1 60774604 60774662 -136420770 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 4 1048 1349 167 4 25 chr1 60774662 60774902 -136420530 - Lx4B LINE L1 -20 7038 6804 4 1048 228 288 72 99 chr1 60776510 60776691 -136418741 - L2c LINE L2 -24 3363 3188 4 1048 676 253 19 13 chr1 60776710 60776866 -136418566 + Lx8 LINE L1 6559 6715 -758 4 1048 307 105 17 17 chr1 60776893 60776919 -136418513 + (TCC)n Simple_repeat Simple_repeat 1 27 0 4 1048 1314 50 0 0 chr1 60776919 60777098 -136418334 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 4 1048 307 105 17 17 chr1 60777098 60777129 -136418303 + (TCC)n Simple_repeat Simple_repeat 3 33 0 4 1048 774 134 26 15 chr1 60777132 60777303 -136418129 - B2_Mm2 SINE B2 -22 171 1 4 1048 1408 299 111 12 chr1 60777303 60777788 -136417644 + Lx8 LINE L1 6790 7322 -151 4 1048 1199 171 92 19 chr1 60777849 60778111 -136417321 - Lx2B LINE L1 -631 6369 6089 4 1048 3164 170 33 24 chr1 60778097 60778735 -136416697 + Lx2B LINE L1 6357 7000 0 4 1048 641 138 46 0 chr1 60778849 60778958 -136416474 + ORR1B2 LTR MaLR 1 114 -253 4 1048 1082 226 46 8 chr1 60778935 60779176 -136416256 - MTD LTR MaLR -169 250 1 4 1048 201 146 0 0 chr1 60779180 60779228 -136416204 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 4 1048 229 220 0 0 chr1 60779300 60779350 -136416082 + A-rich Low_complexity Low_complexity 1 50 0 4 1048 207 0 0 0 chr1 60779366 60779389 -136416043 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1048 433 239 33 64 chr1 60779728 60779893 -136415539 + B3A SINE B2 2 161 -34 4 1048 320 273 68 0 chr1 60780000 60780088 -136415344 - Lx8 LINE L1 -143 7330 7237 4 1048 273 304 12 12 chr1 60780088 60780168 -136415264 + B3A SINE B2 115 194 -4 4 1048 638 209 68 42 chr1 60780644 60780834 -136414598 + Charlie4a DNA MER1_type 34 228 -280 5 1048 248 257 132 79 chr1 60780849 60780963 -136414469 + PB1D7 SINE Alu 1 120 0 5 1048 606 195 117 0 chr1 60781132 60781223 -136414209 - B1_Mus2 SINE Alu -1 146 55 5 1048 186 43 0 0 chr1 60781223 60781246 -136414186 + (TCTCTG)n Simple_repeat Simple_repeat 5 27 0 5 1048 606 195 117 0 chr1 60781246 60781282 -136414150 - B1_Mus2 SINE Alu -93 54 5 5 1048 3041 33 0 3 chr1 60781708 60782046 -136413386 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1048 56581 20 17 7 chr1 60782046 60788452 -136406980 - IAPEz-int LTR ERVK 0 6481 8 5 1048 3041 33 0 3 chr1 60788452 60788790 -136406642 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1048 180 0 0 0 chr1 60789277 60789297 -136406135 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 5 1048 312 311 166 54 chr1 60789907 60790148 -136405284 + LTR79 LTR ERVL 259 526 -1 5 1048 408 207 8 153 chr1 60791254 60791340 -136404092 - B1F SINE Alu -5 144 66 5 1048 1621 58 5 0 chr1 60791340 60791531 -136403901 - B2_Mm1t SINE B2 -1 192 1 5 1048 408 207 8 153 chr1 60791531 60791575 -136403857 - B1F SINE Alu -84 65 33 5 1048 957 199 119 0 chr1 60793014 60793215 -136402217 + URR1A DNA MER1_type 2 226 0 5 1048 419 245 10 20 chr1 60793285 60793385 -136402047 + MIRb SINE MIR 99 197 -71 5 1048 205 283 165 52 chr1 60794825 60794922 -136400510 - L2b LINE L2 -5 3370 3263 5 1048 432 158 0 0 chr1 60795031 60795107 -136400325 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1048 369 0 0 0 chr1 60795301 60795342 -136400090 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1048 11650 68 8 8 chr1 60795645 60797250 -136398182 + MusHAL1 LINE L1 97 1701 -1011 5 1048 6638 101 12 1 chr1 60797248 60798176 -136397256 + Lx2 LINE L1 5703 6640 -357 5 1048 1311 169 13 9 chr1 60798176 60798403 -136397029 + Lx2 LINE L1 6770 6997 0 5 1048 21 82 0 0 chr1 60798405 60798454 -136396978 + AT_rich Low_complexity Low_complexity 1 49 0 5 1048 489 284 279 17 chr1 60798505 60799037 -136396395 + L1MA6 LINE L1 5216 5888 -412 5 1048 443 219 291 33 chr1 60799038 60799189 -136396243 + B3A SINE B2 1 190 -8 5 1048 2368 140 89 153 chr1 60799297 60799641 -136395791 + RMER4B LTR ERVK 17 339 -246 5 1048 1045 42 48 0 chr1 60799641 60799809 -136395623 + (GAA)n Simple_repeat Simple_repeat 3 178 0 5 1048 2368 140 89 153 chr1 60799809 60800072 -136395360 + RMER4B LTR ERVK 340 585 0 5 1048 1165 266 183 35 chr1 60800073 60800559 -136394873 - Lx6 LINE L1 -85 7375 6818 5 1048 1640 235 71 72 chr1 60800582 60801160 -136394272 - Lx6 LINE L1 -676 6374 5769 5 1048 2637 189 4 6 chr1 60801158 60801636 -136393796 - Lx6 LINE L1 -240 5640 5164 5 1048 209 98 0 68 chr1 60801689 60801733 -136393699 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1048 808 204 14 0 chr1 60801761 60801903 -136393529 + B1_Mus2 SINE Alu 4 147 0 5 1048 1061 118 14 14 chr1 60803627 60803773 -136391659 - B1_Mur4 SINE Alu -2 148 3 5 1048 1032 191 74 5 chr1 60804969 60805159 -136390273 + ID_B1 SINE B4 2 204 -20 5 1048 612 0 0 0 chr1 60805558 60805626 -136389806 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 5 1048 950 289 10 53 chr1 60807791 60808091 -136387341 - B4 SINE B4 -1 291 5 5 1048 216 0 0 0 chr1 60809550 60809574 -136385858 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1048 215 227 0 0 chr1 60809678 60809722 -136385710 + MIR3 SINE MIR 113 156 -52 5 1048 867 112 0 0 chr1 60809736 60809870 -136385562 + (CATA)n Simple_repeat Simple_repeat 2 135 0 5 1048 201 154 0 0 chr1 60811733 60811772 -136383660 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 5 1048 1269 292 283 2 chr1 60813587 60814156 -136381276 - MER44C DNA MER2_type -1 732 4 5 1048 281 281 48 77 chr1 60814298 60814402 -136381030 + MIR3 SINE MIR 83 183 -25 5 1048 504 0 0 0 chr1 60814406 60814462 -136380970 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1048 417 20 0 0 chr1 60814845 60814895 -136380537 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1048 1183 148 119 0 chr1 60815566 60815768 -136379664 - URR1A DNA MER1_type 0 226 1 5 1048 28 0 0 0 chr1 60817265 60817293 -136378139 + AT_rich Low_complexity Low_complexity 1 28 0 5 1049 1255 245 131 14 chr1 60817464 60817906 -136377526 + L1MB7 LINE L1 5688 6181 -3 5 1049 242 0 0 57 chr1 60818119 60818154 -136377278 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1049 35 24 0 0 chr1 60818368 60818410 -136377022 + AT_rich Low_complexity Low_complexity 1 42 0 5 1049 500 210 80 0 chr1 60818653 60818753 -136376679 + B1_Mus2 SINE Alu 4 111 -36 5 1049 345 298 105 0 chr1 60818753 60818767 -136376665 + B4 SINE B4 89 214 -78 5 1049 290 206 357 10 chr1 60818822 60818908 -136376524 + RSINE1 SINE B4 30 150 -15 5 1049 396 0 0 0 chr1 60818908 60818952 -136376480 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1049 290 206 357 10 chr1 60818952 60818963 -136376469 + RSINE1 SINE B4 151 161 -4 5 1049 218 321 52 52 chr1 60821283 60821398 -136374034 - MER5B DNA MER1_type -59 119 5 5 1049 612 273 42 0 chr1 60822879 60823022 -136372410 - B1F1 SINE Alu 0 149 1 5 1049 1165 207 5 5 chr1 60823048 60823252 -136372180 - B3 SINE B2 -5 211 8 5 1049 225 0 0 0 chr1 60825027 60825052 -136370380 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1049 191 32 0 61 chr1 60825113 60825146 -136370286 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 5 1049 197 226 32 0 chr1 60827424 60827486 -136367946 + (CATA)n Simple_repeat Simple_repeat 3 66 0 5 1049 251 343 76 0 chr1 60828066 60828171 -136367261 + MIRb SINE MIR 31 143 -125 5 1049 294 237 0 84 chr1 60828171 60828183 -136367249 - ID_B1 SINE B4 -63 161 86 5 1049 330 268 0 0 chr1 60828183 60828254 -136367178 - B1F2 SINE Alu -74 75 5 5 1049 354 203 20 0 chr1 60829169 60829322 -136366110 + CT-rich Low_complexity Low_complexity 2 157 0 5 1049 289 303 34 0 chr1 60829890 60829979 -136365453 + L2a LINE L2 3050 3141 -285 5 1049 481 226 152 44 chr1 60830003 60830207 -136365225 + L2a LINE L2 3201 3426 0 5 1049 595 226 240 34 chr1 60830569 60830748 -136364684 + B3 SINE B2 1 216 0 5 1049 3457 232 57 40 chr1 60830953 60831842 -136363590 - Lx8 LINE L1 -341 7132 6229 5 1049 245 127 218 0 chr1 60832766 60832821 -136362611 - ID4_ SINE ID -15 68 2 5 1049 802 269 100 60 chr1 60832882 60833163 -136362269 - B4A SINE B4 0 292 1 5 1049 230 0 33 0 chr1 60833479 60833509 -136361923 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 5 1049 422 90 30 0 chr1 60834085 60834152 -136361280 + (GGGA)n Simple_repeat Simple_repeat 1 69 0 5 1049 558 324 28 42 chr1 60834784 60835000 -136360432 - MER58B DNA MER1_type -128 213 1 5 1049 22 0 0 0 chr1 60835120 60835142 -136360290 + AT_rich Low_complexity Low_complexity 1 22 0 5 1049 189 0 0 0 chr1 60836391 60836412 -136359020 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1049 315 0 0 0 chr1 60836977 60837012 -136358420 + (TAA)n Simple_repeat Simple_repeat 1 35 0 5 1049 1274 41 0 7 chr1 60837263 60837411 -136358021 - B1_Mus2 SINE Alu 0 147 1 5 1049 324 307 126 46 chr1 60837548 60837722 -136357710 + MLT1L LTR MaLR 128 315 -295 5 1049 249 303 98 34 chr1 60837751 60837956 -136357476 + MLT1L LTR MaLR 370 587 -23 5 1049 925 90 55 0 chr1 60837969 60838114 -136357318 + B2_Mm1t SINE B2 39 191 -2 5 1049 2838 169 155 41 chr1 60838505 60839054 -136356378 + Lx9 LINE L1 6884 7476 -168 5 1049 306 0 0 0 chr1 60839054 60839088 -136356344 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1049 2838 169 155 41 chr1 60839088 60839221 -136356211 + Lx9 LINE L1 7477 7643 -1 5 1049 25 0 0 0 chr1 60839475 60839500 -136355932 + AT_rich Low_complexity Low_complexity 1 25 0 5 1049 24 0 0 0 chr1 60839557 60839581 -136355851 + AT_rich Low_complexity Low_complexity 1 24 0 5 1049 469 305 61 23 chr1 60839583 60839714 -136355718 - RSINE1 SINE B4 -2 163 28 5 1049 16502 65 6 5 chr1 60839720 60842530 -136352902 - L1Md_F2 LINE L1 -6 6576 3768 5 1049 722 118 84 0 chr1 60842605 60842724 -136352708 + RMER19A LTR ERVK 609 737 0 5 1049 2958 128 7 5 chr1 60842726 60843166 -136352266 - RMER19A LTR ERVK -121 616 176 5 1049 2991 25 0 0 chr1 60843166 60843488 -136351944 - RLTRETN_Mm LTR ERVK 0 322 1 5 1049 42668 22 3 4 chr1 60843488 60848335 -136347097 - MMETn-int LTR ERVK 0 4844 1 5 1049 3046 12 0 0 chr1 60848335 60848657 -136346775 - RLTRETN_Mm LTR ERVK 0 322 1 5 1049 1108 116 29 0 chr1 60848660 60848833 -136346599 - RMER19A LTR ERVK -559 178 1 5 1049 766 257 144 11 chr1 60848927 60849191 -136346241 + Lx6 LINE L1 7136 7434 -26 5 1049 1576 188 65 77 chr1 60849929 60850475 -136344957 + MT2B LTR ERVL 1 556 -45 5 1049 423 0 0 0 chr1 60851174 60851221 -136344211 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1049 315 167 0 0 chr1 60851280 60851328 -136344104 + RLTR16 LTR ERVK 1 48 -457 5 1049 1101 117 0 0 chr1 60851344 60851498 -136343934 - ORR1A1 LTR MaLR -52 294 141 5 1049 649 285 99 29 chr1 60851497 60851817 -136343615 + RLTR20D LTR ERVK 61 464 -104 5 1049 306 0 0 0 chr1 60851817 60851851 -136343581 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1049 649 248 86 13 chr1 60851851 60851941 -136343491 + RLTR20D LTR ERVK 465 567 -1 5 1049 333 225 45 0 chr1 60852063 60852152 -136343280 - HAL1 LINE L1 -155 2352 2260 5 1049 253 152 253 0 chr1 60853189 60853268 -136342164 + L1ME3A LINE L1 6041 6139 -34 5 1049 677 305 130 43 chr1 60853511 60853926 -136341506 - Zaphod DNA Tip100 -872 3159 2709 5 1049 330 250 252 25 chr1 60853971 60854090 -136341342 - MLT1A LTR MaLR -56 318 173 5 1049 33 66 0 0 chr1 60854363 60854424 -136341008 + AT_rich Low_complexity Low_complexity 1 61 0 5 1049 347 257 92 0 chr1 60854424 60854533 -136340899 - Lx6 LINE L1 -26 7434 7316 5 1049 229 296 96 0 chr1 60854538 60854614 -136340818 - Zaphod DNA Tip100 -3296 735 649 5 1049 574 354 89 55 chr1 60854614 60854997 -136340435 + LTR16A LTR ERVL 1 396 -55 5 1049 291 175 0 0 chr1 60855070 60855127 -136340305 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1049 180 97 0 0 chr1 60855290 60855321 -136340111 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1049 423 0 0 0 chr1 60855390 60855437 -136339995 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1049 521 247 157 7 chr1 60855440 60855587 -136339845 - B3A SINE B2 -29 169 1 5 1049 262 347 120 87 chr1 60855764 60855947 -136339485 - MLT1G1 LTR MaLR -177 402 214 5 1049 262 373 120 34 chr1 60856314 60856489 -136338943 - MIRb SINE MIR -29 239 50 5 1049 469 178 22 0 chr1 60856586 60856676 -136338756 + MTE2b LTR MaLR 1 92 -287 5 1049 249 139 0 0 chr1 60856677 60856720 -136338712 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 5 1049 290 268 67 30 chr1 60857261 60857390 -136338042 - Charlie24 DNA MER1_type -5 2445 2352 6 1049 1973 277 25 2 chr1 60857539 60858009 -136337423 - Lx5 LINE L1 -18 7032 6552 6 1049 2968 129 75 34 chr1 60858983 60859490 -136335942 + RLTR11A LTR ERVK 1 528 0 6 1049 645 264 7 20 chr1 60859495 60859642 -136335790 + RSINE1 SINE B4 3 147 -18 6 1049 442 355 40 10 chr1 60860478 60860677 -136334755 + LTR16E2 LTR ERVL 364 568 0 6 1049 1150 148 68 59 chr1 60860831 60861053 -136334379 - URR1A DNA MER1_type -1 225 2 6 1049 307 298 133 1 chr1 60861431 60861555 -136333877 - MIRc SINE MIR -107 155 19 6 1049 2501 145 35 8 chr1 60861591 60861993 -136333439 - MTC LTR MaLR -8 413 1 6 1049 342 0 0 0 chr1 60862556 60862594 -136332838 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1049 284 286 13 79 chr1 60862853 60862929 -136332503 + PB1D10 SINE Alu 1 71 -46 6 1049 2803 158 43 6 chr1 60863139 60863628 -136331804 - RLTR28 LTR ERVL 0 524 18 6 1049 462 143 15 31 chr1 60863973 60864072 -136331360 + ORR1B1 LTR MaLR 1 96 -263 6 1049 1675 169 18 42 chr1 60864074 60864408 -136331024 - RLTR20B3 LTR ERVK -80 497 172 6 1049 541 138 0 0 chr1 60864396 60864483 -136330949 - ORR1A3-int LTR MaLR -1876 87 1 6 1049 827 151 60 42 chr1 60864500 60864666 -136330766 - RLTR20B3 LTR ERVK -408 169 1 6 1049 2180 139 12 6 chr1 60864666 60864995 -136330437 + ORR1B1 LTR MaLR 64 394 0 6 1049 3306 164 16 88 chr1 60864995 60865685 -136329747 + ORR1B1-int LTR MaLR 1 640 -1323 6 1049 225 274 0 19 chr1 60865678 60865703 -136329729 + MT2B2 LTR ERVL 236 259 -325 6 1049 337 236 44 126 chr1 60865703 60865827 -136329605 + B1_Mus2 SINE Alu 3 114 -35 6 1049 2646 152 26 7 chr1 60867269 60867739 -136327693 + L1_Mur2 LINE L1 5085 5521 -356 6 1049 32 0 0 0 chr1 60867758 60867790 -136327642 + AT_rich Low_complexity Low_complexity 1 32 0 6 1049 5388 123 101 89 chr1 60867807 60868902 -136326530 + ORR1B1-int LTR MaLR 856 1963 0 6 1049 2598 118 37 3 chr1 60868902 60869283 -136326149 + ORR1B1 LTR MaLR 1 394 0 6 1049 669 299 20 20 chr1 60869424 60869622 -136325810 + MTD LTR MaLR 17 214 -205 6 1049 272 81 42 10 chr1 60869724 60869781 -136325651 + B1_Mur4 SINE Alu 61 149 -1 6 1049 348 280 126 16 chr1 60870025 60870152 -136325280 + MTD LTR MaLR 279 419 0 6 1049 236 308 122 7 chr1 60870311 60870458 -136324974 - MIRc SINE MIR 0 268 105 6 1049 614 167 0 22 chr1 60871056 60871240 -136324192 + GA-rich Low_complexity Low_complexity 1 180 0 6 1049 517 246 46 132 chr1 60872219 60872259 -136323173 - B4A SINE B4 -35 257 223 6 1049 360 0 0 0 chr1 60872259 60872299 -136323133 + (TTA)n Simple_repeat Simple_repeat 2 41 0 6 1049 1074 52 0 0 chr1 60872299 60872433 -136322999 - B1_Mus1 SINE Alu -3 145 12 6 1049 517 246 46 132 chr1 60872433 60872455 -136322977 - B4A SINE B4 -70 222 78 6 1049 499 333 46 7 chr1 60872833 60872984 -136322448 + LTR16B LTR ERVL 37 193 -270 6 1049 214 175 25 0 chr1 60873359 60873399 -136322033 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 6 1049 483 265 152 0 chr1 60873423 60873555 -136321877 - RSINE1 SINE B4 -1 164 13 6 1049 230 301 108 62 chr1 60873745 60873940 -136321492 + LTR33 LTR ERVL 12 215 -300 6 1049 258 346 142 9 chr1 60873952 60874171 -136321261 + LTR33 LTR ERVL 268 515 0 6 1049 287 236 76 68 chr1 60874199 60874331 -136321101 + LTR33 LTR ERVL 383 515 0 6 1049 211 369 70 33 chr1 60874769 60875010 -136320422 + L3 LINE CR1 3467 3716 -773 6 1049 1006 286 56 42 chr1 60875019 60875324 -136320108 + L1M5 LINE L1 4165 4487 -1659 6 1049 2231 142 141 21 chr1 60875324 60875699 -136319733 - RLTR9B2 LTR ERVK 0 420 1 6 1049 1006 286 56 42 chr1 60875699 60875894 -136319538 + L1M5 LINE L1 4488 4672 -1474 6 1049 232 267 152 76 chr1 60875901 60876002 -136319430 + L1M5 LINE L1 4783 4901 -1245 6 1049 1478 70 27 0 chr1 60876002 60876189 -136319243 + B2_Mm2 SINE B2 1 192 -3 6 1049 232 267 152 76 chr1 60876189 60876245 -136319187 + L1M5 LINE L1 4902 4952 -1194 6 1049 1742 236 52 35 chr1 60876347 60876437 -136318995 + Lx8 LINE L1 6619 6715 -758 6 1049 874 166 7 33 chr1 60876437 60876587 -136318845 + B1_Mur4 SINE Alu 4 149 -1 6 1049 1742 236 52 35 chr1 60876587 60876957 -136318475 + Lx8 LINE L1 6716 7087 -386 6 1049 229 225 147 35 chr1 60877144 60877287 -136318145 + L1M5 LINE L1 5009 5167 -979 6 1049 468 223 235 15 chr1 60877480 60877610 -136317822 - MTEb LTR MaLR -6 373 200 6 1049 333 0 0 0 chr1 60877610 60877647 -136317785 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 6 1049 468 235 110 19 chr1 60877647 60877764 -136317668 - MTEb LTR MaLR -180 199 1 6 1049 351 296 0 0 chr1 60878543 60878624 -136316808 + L3 LINE CR1 3966 4046 -443 6 1049 360 308 65 88 chr1 60879046 60879306 -136316126 + L3 LINE CR1 4061 4314 -175 6 1049 408 278 17 85 chr1 60879362 60879539 -136315893 - MIRb SINE MIR -78 190 26 6 1049 210 398 64 18 chr1 60880659 60880879 -136314553 - L4 LINE RTE -350 1679 1450 6 1049 340 257 50 75 chr1 60881309 60881329 -136314103 + CYRA11_Mm Unknown Y-chromosome 157 172 -445 6 1049 979 148 180 0 chr1 60881329 60881518 -136313914 - URR1B DNA MER1_type -1 224 2 6 1049 225 65 0 0 chr1 60883264 60883295 -136312137 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 6 1049 618 51 0 0 chr1 60883569 60883647 -136311785 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1049 185 265 118 24 chr1 60884170 60884255 -136311177 + L2b LINE L2 3058 3150 -225 6 1049 225 0 0 0 chr1 60884260 60884285 -136311147 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1049 2052 203 30 20 chr1 60884296 60884703 -136310729 - MTD LTR MaLR -8 411 1 6 1049 712 214 60 30 chr1 60884703 60885069 -136310363 - MTD-int LTR MaLR 0 1258 926 6 1049 1282 209 131 10 chr1 60885323 60885628 -136309804 + MTD LTR MaLR 11 352 -67 6 1049 996 140 133 6 chr1 60885629 60885794 -136309638 + B2_Mm1t SINE B2 2 187 -6 6 1049 327 331 80 101 chr1 60886298 60886574 -136308858 + B4 SINE B4 1 270 -22 6 1049 189 0 0 0 chr1 60886602 60886623 -136308809 + (CATA)n Simple_repeat Simple_repeat 2 22 0 6 1049 278 254 0 0 chr1 60886624 60886691 -136308741 + GA-rich Low_complexity Low_complexity 2 68 0 6 1049 355 328 32 57 chr1 60886904 60887027 -136308405 + MLT1J LTR MaLR 126 245 -267 6 1049 4909 190 18 50 chr1 60887124 60888148 -136307284 - Lx7 LINE L1 0 7696 6706 6 1049 4963 134 40 55 chr1 60888151 60888858 -136306574 - L1_Mur3 LINE L1 -3690 2190 1488 6 1049 297 0 0 0 chr1 60888858 60888891 -136306541 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 1049 5429 152 39 38 chr1 60888891 60890086 -136305346 - L1_Mur3 LINE L1 -4393 1487 297 6 1049 255 297 39 29 chr1 60890151 60890255 -136305177 - L4 LINE RTE -1316 713 609 6 1049 198 171 0 0 chr1 60891167 60891208 -136304224 + (ATATG)n Simple_repeat Simple_repeat 2 42 0 6 1049 743 258 82 143 chr1 60891267 60891614 -136303818 + Lx9 LINE L1 7066 7365 -279 6 1049 2543 92 39 75 chr1 60891614 60892025 -136303407 + MTA_Mm LTR MaLR 1 396 0 6 1049 743 258 82 143 chr1 60892025 60892278 -136303154 + Lx9 LINE L1 7366 7629 -15 6 1049 344 357 16 11 chr1 60892314 60892498 -136302934 + L1M5 LINE L1 3199 3383 -2763 6 1049 1486 52 5 20 chr1 60893631 60893827 -136301605 + B2_Mm1a SINE B2 1 193 0 6 1049 288 0 0 0 chr1 60893904 60893936 -136301496 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1049 371 250 251 30 chr1 60893968 60894199 -136301233 - B4 SINE B4 -10 282 1 6 1049 23 0 0 0 chr1 60894625 60894648 -136300784 + AT_rich Low_complexity Low_complexity 1 23 0 6 1049 318 323 65 73 chr1 60896639 60896886 -136298546 - LTR16E1 LTR ERVL 0 538 294 6 1049 429 20 0 0 chr1 60897161 60897211 -136298221 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1049 587 273 0 7 chr1 60897211 60897355 -136298077 + L1MB8 LINE L1 1171 1313 -5591 6 1049 389 276 27 91 chr1 60897372 60897559 -136297873 + Lx5 LINE L1 6085 6259 -799 6 1049 3250 114 47 20 chr1 60897559 60898070 -136297362 - Lx4A LINE L1 -684 6374 5850 6 1049 4103 108 97 3 chr1 60898070 60898702 -136296730 + Lx4A LINE L1 6368 7058 0 6 1049 4216 210 44 8 chr1 60898726 60899522 -136295910 + Lx5 LINE L1 6225 7049 -1 6 1049 595 302 47 42 chr1 60899527 60899911 -136295521 + L1MB8 LINE L1 1311 1696 -5208 6 1049 305 257 75 102 chr1 60900112 60900250 -136295182 + L1MB8 LINE L1 1886 2122 -4980 6 1049 224 30 30 0 chr1 60900250 60900283 -136295149 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1049 305 244 87 101 chr1 60900283 60900381 -136295051 + L1MB8 LINE L1 2007 2101 -5233 6 1049 936 229 29 41 chr1 60900381 60900723 -136294709 + RLTR15 LTR ERVK 6 343 -16 6 1049 943 246 95 7 chr1 60900741 60901048 -136294384 + L1MB8 LINE L1 6539 6862 -182 6 1049 261 109 0 0 chr1 60901061 60901107 -136294325 + (CCAA)n Simple_repeat Simple_repeat 3 48 0 6 1049 1446 222 185 8 chr1 60901454 60901546 -136293886 - RLTR20B2 LTR ERVK 0 560 467 6 1049 207 0 0 0 chr1 60901546 60901569 -136293863 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 6 1049 1446 222 185 8 chr1 60901569 60901952 -136293480 - RLTR20B2 LTR ERVK -94 466 2 6 1049 258 32 0 0 chr1 60902486 60902517 -136292915 + (G)n Simple_repeat Simple_repeat 1 31 0 6 1049 270 0 0 0 chr1 60902559 60902589 -136292843 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 6 1049 687 138 24 0 chr1 60903507 60903630 -136291802 + B1_Mur4 SINE Alu 16 141 -9 6 1049 282 29 0 0 chr1 60904167 60904202 -136291230 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1049 455 289 29 42 chr1 60904976 60905198 -136290234 - L1MEc LINE L1 -4982 1481 1235 6 1049 246 32 0 0 chr1 60905207 60905238 -136290194 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1049 2007 53 3 50 chr1 60905526 60905824 -136289608 - RLTR10B LTR ERVK 0 292 9 6 1049 298 48 0 0 chr1 60905832 60905874 -136289558 - RLTR10B LTR ERVK -250 42 1 6 1049 830 280 172 21 chr1 60905874 60906454 -136288978 - L1MEc LINE L1 -5563 900 233 6 1049 2414 148 133 32 chr1 60906487 60906961 -136288471 - RMER1A Other Other -12 1018 497 6 1049 255 298 41 8 chr1 60907190 60907312 -136288120 - LTR37B LTR ERV1 0 468 343 6 1049 554 290 0 43 chr1 60907814 60907998 -136287434 + MER5B DNA MER1_type 3 178 0 6 1049 435 295 86 69 chr1 60910417 60910708 -136284724 - MLT1B LTR MaLR -4 386 91 6 1049 180 0 0 0 chr1 60911544 60911564 -136283868 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1049 1093 70 127 0 chr1 60911564 60911722 -136283710 - B2_Mm2 SINE B2 -13 182 5 6 1049 1110 50 43 0 chr1 60911781 60911920 -136283512 + B1_Mm SINE Alu 3 147 0 6 1049 357 86 0 0 chr1 60911922 60911980 -136283452 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 6 1049 61 94 0 0 chr1 60912156 60912336 -136283096 + AT_rich Low_complexity Low_complexity 1 180 0 6 1049 359 305 105 50 chr1 60912368 60912568 -136282864 - MIRb SINE MIR -8 260 50 6 1049 393 258 155 39 chr1 60913102 60913231 -136282201 + B3A SINE B2 1 144 -54 6 1049 528 59 0 0 chr1 60913232 60913300 -136282132 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1049 245 303 249 17 chr1 60913365 60913546 -136281886 - LTR16C LTR ERVL -181 308 86 6 1049 333 0 0 0 chr1 60913811 60913848 -136281584 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1049 256 189 25 63 chr1 60913868 60913947 -136281485 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 6 1049 503 304 7 0 chr1 60914085 60914223 -136281209 - ID_B1 SINE B4 0 224 86 6 1049 631 213 50 0 chr1 60914276 60914417 -136281015 - B3 SINE B2 0 216 69 6 1049 632 317 90 52 chr1 60915555 60916134 -136279298 - L1MB4 LINE L1 0 6180 5580 7 1049 294 240 11 13 chr1 60916673 60916769 -136278663 + MIRm SINE MIR 88 186 -82 7 1049 325 247 41 8 chr1 60916945 60917057 -136278375 + ID4 SINE ID 12 131 -21 7 1049 423 38 0 0 chr1 60917752 60917805 -136277627 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1049 812 305 68 67 chr1 60918272 60918841 -136276591 + L1MA4 LINE L1 5358 5927 -373 7 1049 225 308 193 15 chr1 60920238 60920373 -136275059 + B3 SINE B2 2 160 -56 7 1049 555 43 0 0 chr1 60920381 60920451 -136274981 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1049 225 0 0 0 chr1 60920451 60920475 -136274957 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1049 222 277 30 15 chr1 60920517 60920583 -136274849 + BC1_Mm scRNA scRNA 3 69 -83 7 1049 861 218 79 31 chr1 60920625 60921026 -136274406 + RLTR20B3 LTR ERVK 21 473 -104 7 1049 342 0 0 0 chr1 60921026 60921064 -136274368 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1049 444 308 159 63 chr1 60922057 60922498 -136272934 - MER21B LTR ERV1 -79 784 302 7 1049 3108 140 61 5 chr1 60923111 60923671 -136271761 - RLTR17 LTR ERVK -101 591 1 7 1049 1363 94 0 6 chr1 60923979 60924160 -136271272 - B2_Mm2 SINE B2 -14 181 2 7 1049 1528 221 64 0 chr1 60924250 60924580 -136270852 + MTE2b LTR MaLR 1 351 -28 7 1049 423 0 0 0 chr1 60924580 60924627 -136270805 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1049 576 0 0 0 chr1 60924628 60924692 -136270740 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1049 419 289 159 50 chr1 60924719 60924901 -136270531 - B4A SINE B4 -88 204 2 7 1049 5463 144 23 18 chr1 60925784 60926733 -136268699 - RMER17B LTR ERVK -4 954 1 7 1049 3796 152 86 41 chr1 60926749 60927610 -136267822 - RLTR13D3 LTR ERVK 0 1114 9 7 1049 708 184 0 0 chr1 60928037 60928189 -136267243 + CT-rich Low_complexity Low_complexity 2 153 0 7 1049 1969 140 0 3 chr1 60928193 60928501 -136266931 - Lx LINE L1 0 6654 6348 7 1049 534 70 0 0 chr1 60928604 60928675 -136266757 + (TCCCC)n Simple_repeat Simple_repeat 1 71 0 7 1049 1388 242 174 20 chr1 60929576 60930115 -136265317 - FordPrefect DNA Tip100 -90 1593 972 7 1049 921 323 31 75 chr1 60930312 60930888 -136264544 - MLT1E2 LTR MaLR -40 587 37 7 1049 242 300 14 41 chr1 60930935 60931008 -136264424 - FordPrefect DNA Tip100 -1222 461 391 7 1049 345 47 0 0 chr1 60931388 60931431 -136264001 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 7 1049 304 331 36 36 chr1 60931758 60931896 -136263536 - MER63A DNA AcHobo -59 151 14 7 1049 561 55 0 0 chr1 60931995 60932068 -136263364 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1049 1242 41 0 13 chr1 60932682 60932831 -136262601 - B1_Mm SINE Alu 0 147 1 7 1049 276 53 0 0 chr1 60933092 60933130 -136262302 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 7 1049 819 212 60 35 chr1 60933156 60933356 -136262076 + B3 SINE B2 1 205 -11 7 1049 503 112 11 0 chr1 60933799 60933888 -136261544 + (TC)n Simple_repeat Simple_repeat 2 91 0 7 1049 273 286 68 125 chr1 60934319 60934511 -136260921 - MER53 DNA hAT -9 184 4 7 1049 1317 96 27 0 chr1 60934630 60934817 -136260615 + B2_Mm1t SINE B2 2 193 0 7 1049 414 0 0 0 chr1 60934881 60934927 -136260505 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1049 225 0 0 0 chr1 60934927 60934951 -136260481 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1049 428 162 12 12 chr1 60934951 60935032 -136260400 - B1_Mus2 SINE Alu -5 142 62 7 1049 24 53 0 0 chr1 60935176 60935214 -136260218 + AT_rich Low_complexity Low_complexity 1 38 0 7 1049 225 287 29 87 chr1 60935825 60935928 -136259504 - LTR50 LTR ERVL -2 793 697 7 1049 268 286 102 28 chr1 60936249 60936357 -136259075 - LTR50 LTR ERVL -633 162 47 7 1049 576 293 114 63 chr1 60938223 60938722 -136256710 + L1ME1 LINE L1 5484 6025 -334 7 1049 782 264 28 5 chr1 60938722 60938939 -136256493 + ID_B1 SINE B4 2 223 -1 7 1049 506 291 111 70 chr1 60938939 60939046 -136256386 + L1ME1 LINE L1 6026 6125 -234 7 1049 210 71 0 0 chr1 60939195 60939223 -136256209 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1049 255 329 14 0 chr1 60939223 60939296 -136256136 + (TCCA)n Simple_repeat Simple_repeat 2 75 0 7 1049 181 361 48 40 chr1 60939878 60940002 -136255430 - L3 LINE CR1 -156 4333 4209 7 1049 862 304 56 34 chr1 60940098 60940456 -136254976 - MT2A LTR ERVL -106 427 62 7 1049 306 0 0 0 chr1 60940514 60940548 -136254884 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1049 231 273 0 0 chr1 60940610 60940665 -136254767 - MTE2b LTR MaLR -324 55 1 7 1049 739 207 0 7 chr1 60940975 60941111 -136254321 + RSINE1 SINE B4 2 136 -29 7 1049 381 22 0 0 chr1 60941129 60941175 -136254257 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1049 306 0 0 0 chr1 60941189 60941223 -136254209 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1049 891 276 37 22 chr1 60941223 60941486 -136253946 - B4 SINE B4 -23 269 1 7 1049 626 228 219 0 chr1 60941729 60941944 -136253488 - MT2A LTR ERVL -4 529 268 7 1049 22 0 0 0 chr1 60942132 60942154 -136253278 + AT_rich Low_complexity Low_complexity 1 22 0 7 1049 369 0 0 0 chr1 60942154 60942195 -136253237 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1049 183 42 0 0 chr1 60942657 60942681 -136252751 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 7 1049 4480 51 0 0 chr1 60942681 60943209 -136252223 - L1_Mus1 LINE L1 -6 6561 6034 7 1049 1989 146 110 36 chr1 60944963 60945240 -136250192 - MTC LTR MaLR 0 421 106 7 1049 1135 88 0 0 chr1 60945240 60945387 -136250045 + B1_Mus1 SINE Alu 2 148 0 7 1049 1989 146 110 36 chr1 60945387 60945499 -136249933 - MTC LTR MaLR -316 105 3 7 1049 577 230 42 21 chr1 60945785 60945927 -136249505 + B1_Mur1 SINE Alu 5 149 0 7 1049 390 346 50 16 chr1 60946101 60946464 -136248968 + HERV16-int LTR ERVL 889 1276 -3720 7 1049 423 358 72 57 chr1 60946766 60947260 -136248172 + HERV16-int LTR ERVL 1906 2445 -3312 7 1049 279 54 0 0 chr1 60947315 60947352 -136248080 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1049 762 116 26 9 chr1 60947369 60947596 -136247836 + (CAGAGA)n Simple_repeat Simple_repeat 1 230 0 7 1049 902 243 5 5 chr1 60948267 60948470 -136246962 - B3 SINE B2 0 216 14 7 1050 412 340 79 12 chr1 60948633 60948723 -136246709 + LTR16B2 LTR ERVL 1 89 -373 7 1050 721 289 178 38 chr1 60948723 60949043 -136246389 - MLT1A0 LTR MaLR 0 365 1 7 1050 412 340 79 12 chr1 60949043 60949116 -136246316 + LTR16B2 LTR ERVL 90 175 -287 7 1050 318 336 28 0 chr1 60949530 60949637 -136245795 + CT-rich Low_complexity Low_complexity 3 112 0 7 1050 425 163 11 0 chr1 60951697 60951789 -136243643 + GA-rich Low_complexity Low_complexity 4 96 0 7 1050 651 131 30 8 chr1 60951793 60951808 -136243624 + polypyrimidine Low_complexity Low_complexity 119 135 0 7 1050 234 0 0 0 chr1 60951808 60951834 -136243598 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 7 1050 651 131 30 8 chr1 60951834 60951949 -136243483 + CT-rich Low_complexity Low_complexity 2 118 0 7 1050 529 259 72 0 chr1 60951956 60952095 -136243337 - B1F SINE Alu 0 149 1 7 1050 426 211 103 17 chr1 60952493 60952609 -136242823 + L1MA10 LINE L1 6202 6327 -7 7 1050 238 0 53 26 chr1 60953529 60953567 -136241865 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1050 7595 62 31 9 chr1 60953867 60954984 -136240448 + L1_Mus1 LINE L1 5428 6567 0 7 1050 345 24 0 0 chr1 60956457 60956499 -136238933 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1050 249 330 126 6 chr1 60956540 60956657 -136238775 - PB1 SINE Alu -2 125 1 7 1050 22 56 0 0 chr1 60957131 60957167 -136238265 + AT_rich Low_complexity Low_complexity 1 36 0 7 1050 338 235 115 19 chr1 60957508 60957578 -136237854 + MTE2b LTR MaLR 1 80 -299 7 1050 975 55 0 0 chr1 60957578 60957705 -136237727 - ORR1A3 LTR MaLR 0 327 201 7 1050 243 0 0 0 chr1 60958308 60958335 -136237097 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1050 1267 109 0 98 chr1 60958335 60958569 -136236863 - ORR1A3 LTR MaLR -115 211 1 7 1050 991 249 48 93 chr1 60958599 60958931 -136236501 + MTE2b LTR MaLR 63 379 0 7 1050 202 239 0 0 chr1 60959840 60959886 -136235546 + A-rich Low_complexity Low_complexity 1 46 0 7 1050 244 178 44 0 chr1 60960837 60960882 -136234550 + RSINE1 SINE B4 82 128 -37 7 1050 1241 69 120 6 chr1 60961813 60961988 -136233444 + B2_Mm2 SINE B2 1 195 0 7 1050 244 350 10 29 chr1 60963198 60963301 -136232131 + MIRb SINE MIR 100 200 -68 7 1050 227 304 51 0 chr1 60963338 60963417 -136232015 + MT2A LTR ERVL 1 83 -450 7 1050 573 207 7 40 chr1 60963471 60963622 -136231810 + MTE2b LTR MaLR 231 376 -3 7 1050 414 0 0 0 chr1 60964137 60964183 -136231249 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1050 224 271 0 0 chr1 60964586 60964645 -136230787 - PB1D9 SINE Alu -60 60 2 7 1050 26 0 0 0 chr1 60964890 60964916 -136230516 + AT_rich Low_complexity Low_complexity 1 26 0 7 1050 420 194 0 0 chr1 60964990 60965062 -136230370 - ID4_ SINE ID -2 81 10 7 1050 228 238 0 0 chr1 60965326 60965389 -136230043 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1050 2230 189 89 8 chr1 60966627 60967134 -136228298 + Lx9 LINE L1 7096 7643 -1 7 1050 600 185 14 14 chr1 60967239 60967387 -136228045 + GA-rich Low_complexity Low_complexity 1 148 0 7 1050 364 244 13 0 chr1 60968152 60968230 -136227202 - ID4_ SINE ID -3 80 2 7 1050 234 340 39 0 chr1 60968245 60968348 -136227084 - PB1D10 SINE Alu -1 116 10 7 1050 267 157 0 0 chr1 60968445 60968496 -136226936 + (CAA)n Simple_repeat Simple_repeat 2 52 0 7 1050 201 259 19 0 chr1 60970802 60970856 -136224576 + CT-rich Low_complexity Low_complexity 5 59 0 7 1050 510 17 0 0 chr1 60970895 60970954 -136224478 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1050 21 0 0 0 chr1 60971941 60971962 -136223470 + AT_rich Low_complexity Low_complexity 1 21 0 7 1050 24 0 0 0 chr1 60972634 60972658 -136222774 + AT_rich Low_complexity Low_complexity 1 24 0 8 1050 714 205 83 18 chr1 60972758 60972927 -136222505 - B3A SINE B2 -18 180 1 8 1050 192 227 0 0 chr1 60973676 60973764 -136221668 + CT-rich Low_complexity Low_complexity 1 88 0 8 1050 308 188 76 76 chr1 60974461 60974553 -136220879 - B4 SINE B4 0 292 201 8 1050 6440 52 0 1 chr1 60975598 60976372 -136219060 + L1_Mus1 LINE L1 5795 6567 0 8 1050 524 288 52 13 chr1 60977842 60977997 -136217435 + RSINE1 SINE B4 3 163 -2 8 1050 524 98 0 21 chr1 60977998 60978092 -136217340 + (CACG)n Simple_repeat Simple_repeat 4 95 0 8 1050 397 279 54 0 chr1 60978241 60978352 -136217080 - MTE2b LTR MaLR -10 369 253 8 1050 840 278 14 0 chr1 60978758 60978970 -136216462 - MTE2b LTR MaLR -164 215 1 8 1050 248 288 55 39 chr1 60978990 60979161 -136216271 - MIRb SINE MIR -66 202 20 8 1050 6193 80 14 20 chr1 60979686 60980546 -136214886 + RLTR13A LTR ERVK 1 855 0 8 1050 202 280 0 0 chr1 60981170 60981220 -136214212 + L3 LINE CR1 4172 4221 -268 8 1050 1112 63 14 0 chr1 60982397 60982539 -136212893 - B1_Mm SINE Alu -3 144 1 8 1050 181 152 0 0 chr1 60983652 60983685 -136211747 + MIR SINE MIR 112 144 -118 8 1050 1333 124 55 55 chr1 60985335 60985590 -136209842 - Lx4B LINE L1 -83 6975 6721 8 1050 1067 112 12 0 chr1 60985629 60985798 -136209634 + (TTCTCC)n Simple_repeat Simple_repeat 5 175 0 8 1050 830 314 106 30 chr1 60985822 60986226 -136209206 - Lx8 LINE L1 -165 7308 6874 8 1050 194 272 143 36 chr1 60986715 60986799 -136208633 + MIR SINE MIR 25 117 -91 8 1050 1765 47 0 0 chr1 60988685 60988898 -136206534 - L1Md_T LINE L1 -1 6581 6369 8 1050 1487 256 23 102 chr1 60989221 60989738 -136205694 - RLTR18B LTR ERVK 0 512 37 8 1050 393 278 37 0 chr1 60989753 60989861 -136205571 + RLTR18B LTR ERVK 399 510 -2 8 1050 3052 262 43 86 chr1 60990854 60992008 -136203424 + Lx9 LINE L1 6540 7644 0 8 1050 244 290 86 14 chr1 60992049 60992189 -136203243 - MIR SINE MIR 0 262 113 8 1050 450 317 108 46 chr1 60993934 60994398 -136201034 - MamGypLTR1d LTR Gypsy -76 737 225 8 1050 522 114 0 0 chr1 60994858 60994937 -136200495 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1050 256 269 74 21 chr1 60995592 60995687 -136199745 + MER5A1 DNA MER1_type 2 101 -65 8 1050 210 337 140 6 chr1 60995759 60995938 -136199494 + MIRc SINE MIR 27 229 -39 8 1050 660 291 71 0 chr1 60996938 60997120 -136198312 + B3A SINE B2 2 196 -2 8 1050 274 369 16 24 chr1 60999114 60999239 -136196193 + MLT2B1 LTR ERVL 371 494 -73 8 1050 809 311 7 27 chr1 60999309 60999603 -136195829 + B4A SINE B4 3 290 -2 8 1050 195 42 0 0 chr1 60999857 60999881 -136195551 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1050 393 238 60 0 chr1 60999889 60999973 -136195459 - PB1D10 SINE Alu -27 90 2 8 1050 381 293 34 17 chr1 61000225 61000343 -136195089 + PB1 SINE Alu 3 122 -5 1 1050 239 361 41 0 chr1 61000526 61000623 -136194809 - MLT1L LTR MaLR -332 278 178 2 1050 22 0 0 0 chr1 61001418 61001440 -136193992 + AT_rich Low_complexity Low_complexity 1 22 0 3 1050 253 325 172 28 chr1 61001825 61002058 -136193374 - L2 LINE L2 -1055 2364 2101 4 1050 335 60 20 0 chr1 61002058 61002108 -136193324 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1050 253 325 172 28 chr1 61002108 61002263 -136193169 - L2 LINE L2 -1319 2100 1921 4 1050 350 341 92 52 chr1 61002498 61002770 -136192662 - MLT1J LTR MaLR -30 482 200 6 1050 1038 188 14 78 chr1 61002770 61003053 -136192379 - RMER1B Other Other -16 1050 786 7 1050 327 333 97 18 chr1 61003108 61003273 -136192159 - MLT1J LTR MaLR -333 179 2 6 1050 21 0 0 0 chr1 61003311 61003332 -136192100 + AT_rich Low_complexity Low_complexity 1 21 0 8 1050 911 262 99 43 chr1 61003511 61003977 -136191455 + L1_Mur3 LINE L1 3031 3522 -2358 9 1050 706 128 18 18 chr1 61003983 61004089 -136191343 - B1_Mur4 SINE Alu -39 111 5 1 1050 192 40 0 0 chr1 61004089 61004114 -136191318 + (CTAG)n Simple_repeat Simple_repeat 4 28 0 1 1050 1357 273 95 21 chr1 61004161 61004744 -136190688 + Lx8 LINE L1 5242 5847 0 1 1050 4067 80 36 4 chr1 61005315 61005843 -136189589 - L1_Mus1 LINE L1 -1 6566 6022 1 1050 759 240 135 47 chr1 61006151 61006305 -136189127 + Lx8 LINE L1 6097 6263 -1210 1 1050 285 29 0 0 chr1 61006305 61006339 -136189093 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1050 1016 242 244 21 chr1 61006339 61006713 -136188719 + Lx8 LINE L1 6264 6721 -752 1 1050 993 198 96 15 chr1 61006720 61006992 -136188440 + RCHARR1 DNA MER1_type 678 971 -3 1 1050 426 229 38 0 chr1 61007021 61007126 -136188306 + RMER15-int LTR ERVL 4363 4471 -528 1 1050 2047 265 94 43 chr1 61007142 61007958 -136187474 + Lx8 LINE L1 6600 7457 -16 1 1050 375 356 49 53 chr1 61009791 61010037 -136185395 - L1MC1 LINE L1 0 6333 6089 1 1050 180 0 0 0 chr1 61010260 61010280 -136185152 + (GGAGA)n Simple_repeat Simple_repeat 1 20 0 1 1050 917 140 6 0 chr1 61010281 61010459 -136184973 + (GA)n Simple_repeat Simple_repeat 1 179 0 2 1050 595 181 7 59 chr1 61010815 61010950 -136184482 + URR1B DNA MER1_type 53 180 -45 2 1050 273 57 0 0 chr1 61011370 61011405 -136184027 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1050 529 284 31 78 chr1 61011445 61011636 -136183796 - B3A SINE B2 -16 182 1 2 1050 339 250 102 7 chr1 61012272 61012409 -136183023 + L1MC1 LINE L1 4670 4819 -1327 2 1050 890 288 104 31 chr1 61012411 61013132 -136182300 + L1MC1 LINE L1 5016 5793 -1992 2 1050 628 337 50 18 chr1 61013144 61013425 -136182007 + B4A SINE B4 1 290 -2 2 1050 1047 290 48 42 chr1 61013517 61013992 -136181440 + L1MC1 LINE L1 5814 6291 -42 2 1050 937 284 136 44 chr1 61014278 61014712 -136180720 + MLT2B1 LTR ERVL 8 481 -39 2 1050 723 123 30 12 chr1 61014712 61014876 -136180556 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 2 1050 762 274 21 21 chr1 61015031 61015221 -136180211 - B3 SINE B2 0 216 27 2 1050 1023 209 55 0 chr1 61015238 61015439 -136179993 - B3 SINE B2 -4 212 1 2 1050 772 229 93 10 chr1 61015444 61015638 -136179794 - ID_B1 SINE B4 -7 217 8 3 1050 23 33 0 0 chr1 61015719 61015749 -136179683 + AT_rich Low_complexity Low_complexity 1 30 0 3 1050 289 297 58 19 chr1 61015757 61015860 -136179572 - ID_B1 SINE B4 -34 190 84 3 1050 327 319 71 22 chr1 61015973 61016180 -136179252 + MIR SINE MIR 44 256 -12 3 1050 456 268 26 26 chr1 61016591 61016706 -136178726 - PB1D10 SINE Alu -2 115 1 3 1050 2378 82 3 0 chr1 61016712 61017030 -136178402 - ORR1A2 LTR MaLR -8 319 1 3 1050 1260 43 0 0 chr1 61017763 61017903 -136177529 - B1_Mus1 SINE Alu -8 140 1 3 1050 949 191 111 5 chr1 61019019 61019209 -136176223 + B3 SINE B2 2 211 -5 3 1050 230 226 357 0 chr1 61019391 61019475 -136175957 + MIRb SINE MIR 117 230 -38 3 1050 202 343 14 0 chr1 61019943 61020013 -136175419 + C-rich Low_complexity Low_complexity 1 71 0 3 1050 17600 53 23 2 chr1 61020097 61022829 -136172603 - L1VL4 LINE L1 -360 3199 411 4 1050 231 164 17 52 chr1 61022934 61022992 -136172440 + B3 SINE B2 160 215 -1 4 1050 998 46 0 15 chr1 61022993 61023126 -136172306 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 4 1050 241 143 0 51 chr1 61023834 61023893 -136171539 + (TATG)n Simple_repeat Simple_repeat 4 59 0 4 1050 308 222 8 38 chr1 61023990 61024121 -136171311 + (TATG)n Simple_repeat Simple_repeat 1 127 0 4 1050 468 342 12 19 chr1 61024189 61024350 -136171082 - B4A SINE B4 -61 231 72 4 1050 1373 279 28 120 chr1 61024506 61025183 -136170249 - RMER13B LTR ERVK -293 615 1 4 1050 396 0 0 0 chr1 61025200 61025244 -136170188 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1050 411 247 127 58 chr1 61026070 61026259 -136169173 - B4A SINE B4 -85 207 6 4 1050 1136 112 0 0 chr1 61026551 61026711 -136168721 + B2_Mm2 SINE B2 2 161 -34 4 1050 252 0 0 0 chr1 61026711 61026739 -136168693 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 1050 216 0 0 0 chr1 61026838 61026862 -136168570 + (CAA)n Simple_repeat Simple_repeat 3 26 0 5 1050 272 368 20 40 chr1 61027195 61027294 -136168138 - B4A SINE B4 -114 178 82 5 1050 500 81 0 13 chr1 61027312 61027387 -136168045 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1050 387 0 0 0 chr1 61027387 61027430 -136168002 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1050 483 250 45 0 chr1 61027432 61027544 -136167888 - RSINE1 SINE B4 -48 117 1 5 1050 344 302 92 25 chr1 61027544 61027629 -136167803 - B4A SINE B4 -195 97 5 5 1050 420 329 100 54 chr1 61028017 61028258 -136167174 - B4A SINE B4 0 292 41 5 1050 24 53 0 0 chr1 61028458 61028496 -136166936 + AT_rich Low_complexity Low_complexity 1 38 0 5 1050 288 326 30 30 chr1 61028592 61028693 -136166739 - MIR SINE MIR -69 139 39 5 1050 689 258 13 7 chr1 61029301 61029453 -136165979 + B3A SINE B2 8 160 -38 6 1050 396 0 0 0 chr1 61029454 61029498 -136165934 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1050 234 0 0 0 chr1 61029498 61029523 -136165909 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1050 243 0 0 0 chr1 61030103 61030130 -136165302 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1050 237 65 0 0 chr1 61030812 61030843 -136164589 + (AGGGGG)n Simple_repeat Simple_repeat 1 31 0 6 1050 210 158 0 0 chr1 61031349 61031387 -136164045 + A-rich Low_complexity Low_complexity 1 38 0 6 1050 23 0 0 0 chr1 61031738 61031761 -136163671 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 269 253 26 13 chr1 61031878 61031954 -136163478 - MER87 LTR ERV1 -39 502 426 6 1050 356 330 52 42 chr1 61032463 61032656 -136162776 + MIRb SINE MIR 11 205 -63 6 1050 321 290 85 52 chr1 61032933 61033086 -136162346 + MIR SINE MIR 15 172 -90 6 1050 261 0 0 0 chr1 61033225 61033254 -136162178 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1050 1125 256 14 51 chr1 61033273 61033569 -136161863 - B4A SINE B4 0 292 8 7 1050 589 17 74 16 chr1 61033588 61033709 -136161723 + (TA)n Simple_repeat Simple_repeat 1 128 0 7 1050 837 158 0 0 chr1 61034380 61034557 -136160875 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 7 1050 284 224 0 0 chr1 61034559 61034617 -136160815 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 7 1050 339 25 0 0 chr1 61034952 61034992 -136160440 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 7 1050 189 159 0 0 chr1 61035363 61035407 -136160025 + T-rich Low_complexity Low_complexity 2 45 0 7 1050 359 354 97 65 chr1 61036078 61036522 -136158910 - L2b LINE L2 0 3375 2918 7 1050 203 289 92 42 chr1 61037053 61037172 -136158260 - MIRb SINE MIR -104 164 40 7 1050 968 272 5 9 chr1 61037938 61038153 -136157279 - B3 SINE B2 -1 215 2 7 1050 362 215 15 0 chr1 61038226 61038291 -136157141 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 8 1050 579 198 268 0 chr1 61038878 61039035 -136156397 - ID_B1 SINE B4 -8 216 18 8 1050 30 45 0 0 chr1 61039737 61039781 -136155651 + AT_rich Low_complexity Low_complexity 1 44 0 8 1050 191 232 125 0 chr1 61040667 61040723 -136154709 + MIR3 SINE MIR 96 158 -50 8 1050 192 40 0 0 chr1 61040831 61040856 -136154576 + (TA)n Simple_repeat Simple_repeat 1 25 0 8 1050 233 296 37 37 chr1 61040857 61040996 -136154436 + MIRm SINE MIR 123 261 -7 8 1050 459 0 0 0 chr1 61041667 61041718 -136153714 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1050 198 318 22 11 chr1 61041837 61041926 -136153506 - L2 LINE L2 -786 2633 2544 8 1050 809 127 8 0 chr1 61042513 61042647 -136152785 + (GA)n Simple_repeat Simple_repeat 2 136 0 8 1050 212 200 20 20 chr1 61043460 61043511 -136151921 + CT-rich Low_complexity Low_complexity 5 55 0 8 1050 607 270 15 0 chr1 61043516 61043653 -136151779 - B1F SINE Alu -10 139 1 9 1050 222 37 0 0 chr1 61043706 61043733 -136151699 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 9 1050 405 0 0 0 chr1 61044388 61044433 -136150999 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1050 548 276 16 0 chr1 61044450 61044577 -136150855 - B4A SINE B4 0 292 164 9 1050 285 91 0 0 chr1 61044601 61044645 -136150787 - L1_Mm LINE L1 -2988 2895 2852 9 1050 8177 43 4 0 chr1 61044643 61045786 -136149646 - L1Md_F2 LINE L1 -2 6580 5432 9 1050 327 312 52 52 chr1 61045786 61045921 -136149511 - B4A SINE B4 -121 171 37 9 1050 333 0 0 0 chr1 61046542 61046579 -136148853 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1050 243 88 0 0 chr1 61046579 61046612 -136148820 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1050 781 293 112 4 chr1 61046640 61046900 -136148532 - B4A SINE B4 0 292 5 9 1050 378 0 0 0 chr1 61047613 61047655 -136147777 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1050 3537 95 2 44 chr1 61048053 61048558 -136146874 - Lx LINE L1 -2 6652 6169 1 1050 262 22 43 43 chr1 61049876 61049923 -136145509 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1050 198 150 0 0 chr1 61049923 61049963 -136145469 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1050 180 0 0 0 chr1 61050965 61050985 -136144447 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1050 222 150 0 0 chr1 61051963 61052003 -136143429 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1050 641 259 30 65 chr1 61052025 61052194 -136143238 - RSINE1 SINE B4 0 165 3 1 1050 616 299 108 5 chr1 61052661 61052856 -136142576 + ID_B1 SINE B4 2 216 -8 1 1050 749 41 10 0 chr1 61052871 61052968 -136142464 + (GGAAA)n Simple_repeat Simple_repeat 1 98 0 1 1050 372 250 39 39 chr1 61053003 61053107 -136142325 + B1F SINE Alu 43 146 -3 1 1050 394 246 12 35 chr1 61053116 61053215 -136142217 + ID4 SINE ID 1 97 -55 1 1050 733 320 111 22 chr1 61053886 61054257 -136141175 - LTR16E1 LTR ERVL -3 535 132 1 1050 432 0 0 0 chr1 61054430 61054478 -136140954 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1050 457 259 90 35 chr1 61056840 61057040 -136138392 - L1MC4 LINE L1 -395 7647 7437 1 1050 518 317 52 26 chr1 61057278 61057469 -136137963 - ID_B1 SINE B4 -2 222 27 1 1050 288 0 0 0 chr1 61058674 61058706 -136136726 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1 1050 965 136 13 20 chr1 61060290 61060440 -136134992 - B1_Mur4 SINE Alu 0 150 2 1 1050 837 301 33 0 chr1 61060477 61060690 -136134742 + MTE2b LTR MaLR 17 236 -143 1 1050 828 167 0 0 chr1 61062273 61062399 -136133033 - B3 SINE B2 -4 212 87 1 1050 549 198 18 28 chr1 61062534 61062643 -136132789 + B3 SINE B2 16 123 -93 1 1050 399 333 73 15 chr1 61063200 61063404 -136132028 - L3 LINE CR1 -45 4444 4229 1 1050 278 204 11 0 chr1 61063422 61063510 -136131922 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1050 234 284 76 56 chr1 61064094 61064150 -136131282 + L1ME1 LINE L1 5137 5195 -951 1 1050 874 194 48 29 chr1 61064150 61064357 -136131075 + B3 SINE B2 1 211 -5 1 1050 1103 308 99 30 chr1 61064357 61065246 -136130186 + L1ME1 LINE L1 5196 6141 -38 1 1050 609 110 62 0 chr1 61066566 61066711 -136128721 + GA-rich Low_complexity Low_complexity 1 154 0 1 1050 282 252 53 18 chr1 61066735 61066848 -136128584 + RMER1C Other Other 1226 1342 0 1 1050 1088 251 61 25 chr1 61067020 61067429 -136128003 - RLTR16 LTR ERVK -49 456 1 1 1050 812 266 32 157 chr1 61067460 61067893 -136127539 - MTE2a LTR MaLR 0 379 1 1 1050 1621 210 38 134 chr1 61068090 61068697 -136126735 - Lx7 LINE L1 -77 7619 7107 1 1050 417 39 0 0 chr1 61068759 61068810 -136126622 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1 1050 461 244 11 11 chr1 61068818 61068909 -136126523 - PB1D10 SINE Alu -26 91 1 1 1050 457 325 99 7 chr1 61069517 61069669 -136125763 - MER58B DNA MER1_type -1 340 175 1 1050 278 278 92 10 chr1 61069698 61069796 -136125636 + LTR50 LTR ERVL 2 107 -688 1 1050 366 346 64 26 chr1 61070073 61070307 -136125125 + LTR33A LTR ERVL 278 520 0 1 1050 315 71 0 0 chr1 61070411 61070453 -136124979 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1050 239 336 31 47 chr1 61070802 61070930 -136124502 - B1_Mus1 SINE Alu -20 128 3 1 1050 378 353 34 0 chr1 61070823 61070942 -136124490 - ID_B1 SINE B4 -34 190 68 1 1050 202 56 56 0 chr1 61072730 61072766 -136122666 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1050 696 280 100 54 chr1 61072838 61073117 -136122315 - B4A SINE B4 0 292 1 1 1050 1054 128 22 11 chr1 61073149 61073330 -136122102 - URR1A DNA MER1_type -2 224 42 1 1050 207 0 0 0 chr1 61074027 61074050 -136121382 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1050 504 0 0 0 chr1 61074266 61074322 -136121110 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1050 438 306 22 0 chr1 61074425 61074559 -136120873 - B1F SINE Alu -12 137 1 1 1050 198 0 0 0 chr1 61074748 61074770 -136120662 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1050 3961 120 24 14 chr1 61074770 61075406 -136120026 - Lx LINE L1 -23 6631 5990 1 1050 4797 144 3 37 chr1 61075401 61076309 -136119123 + L1_Mm LINE L1 4557 5433 -450 1 1050 204 67 0 0 chr1 61076324 61076354 -136119078 + (ATG)n Simple_repeat Simple_repeat 2 31 0 1 1050 204 40 0 0 chr1 61077252 61077277 -136118155 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1050 273 336 7 94 chr1 61078642 61078780 -136116652 - L2c LINE L2 -4 3383 3258 1 1050 216 0 0 0 chr1 61078932 61078956 -136116476 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1050 181 245 61 0 chr1 61079030 61079079 -136116353 - L2c LINE L2 -247 3140 3089 1 1050 384 22 0 0 chr1 61079082 61079127 -136116305 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1051 285 29 0 0 chr1 61080549 61080583 -136114849 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1051 479 276 14 80 chr1 61080583 61080721 -136114711 - ID_B1 SINE B4 -14 210 82 1 1051 621 266 138 5 chr1 61081086 61081275 -136114157 + Tigger5 DNA MER2_type 4 217 -2189 1 1051 349 253 0 0 chr1 61081311 61081386 -136114046 + Tigger5 DNA MER2_type 2309 2383 -23 1 1051 267 266 5 0 chr1 61082512 61082580 -136112852 + MIR SINE MIR 39 114 -154 1 1051 448 45 15 15 chr1 61085331 61085399 -136110033 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1051 324 0 0 0 chr1 61085399 61085435 -136109997 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1051 196 279 0 62 chr1 61085625 61085690 -136109742 - L2c LINE L2 -226 3161 3101 1 1051 360 43 0 0 chr1 61085954 61086000 -136109432 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1051 465 19 0 0 chr1 61086232 61086286 -136109146 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1051 279 0 0 0 chr1 61086286 61086316 -136109116 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1051 489 260 13 33 chr1 61086476 61086627 -136108805 - B1_Mur1 SINE Alu -1 148 1 1 1051 289 274 27 0 chr1 61087044 61087117 -136108315 + MIR3 SINE MIR 133 207 -1 1 1051 887 262 12 33 chr1 61087126 61087371 -136108061 + MamRep434 DNA TcMar 109 348 -78 1 1051 603 0 0 0 chr1 61087740 61087807 -136107625 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1051 554 245 72 47 chr1 61088122 61088315 -136107117 - B3A SINE B2 0 198 1 1 1051 516 32 0 0 chr1 61088672 61088734 -136106698 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1051 281 283 147 91 chr1 61089081 61089109 -136106323 - MLT1D LTR MaLR -51 416 393 1 1051 847 220 254 0 chr1 61089109 61089404 -136106028 - ORR1D2 LTR MaLR 0 370 1 1 1051 642 278 142 54 chr1 61089404 61089713 -136105719 - MLT1D LTR MaLR -75 392 55 1 1051 506 418 56 12 chr1 61089821 61090143 -136105289 - LTR16E2 LTR ERVL 0 568 233 1 1051 240 289 126 84 chr1 61090614 61090852 -136104580 - L2a LINE L2 -214 3173 2926 1 1051 218 133 49 16 chr1 61090901 61090962 -136104470 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1051 232 200 14 14 chr1 61091629 61091700 -136103732 + GA-rich Low_complexity Low_complexity 3 73 0 1 1051 1499 232 50 50 chr1 61092450 61092827 -136102605 - MTE2a LTR MaLR -2 377 1 1 1051 260 378 75 70 chr1 61092993 61093445 -136101987 + L2c LINE L2 2932 3386 -1 1 1051 1717 280 68 32 chr1 61093454 61093956 -136101476 - RMER5 LTR ERV1 -2 532 13 1 1051 392 202 35 17 chr1 61093959 61094048 -136101384 - ORR1E LTR MaLR 0 379 280 1 1051 1368 173 0 0 chr1 61094048 61094273 -136101159 + URR1B DNA MER1_type 1 225 0 1 1051 417 358 25 108 chr1 61094273 61094581 -136100851 - ORR1E LTR MaLR -91 279 6 1 1051 709 311 117 39 chr1 61094629 61094910 -136100522 + MER47B DNA MER2_type 2 304 -114 1 1051 29 0 0 25 chr1 61099496 61099509 -136095923 + AT_rich Low_complexity Low_complexity 1 13 0 1 1051 315 0 0 0 chr1 61099509 61099544 -136095888 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1051 29 0 0 25 chr1 61099544 61099570 -136095862 + AT_rich Low_complexity Low_complexity 1 26 0 1 1051 330 412 38 51 chr1 61099728 61100020 -136095412 + MLT1K-int LTR MaLR 483 770 -617 1 1051 1090 210 50 58 chr1 61100554 61100832 -136094600 + MTD LTR MaLR 124 399 -20 1 1051 267 382 33 83 chr1 61101139 61101369 -136094063 + MLT1K LTR MaLR 274 487 -108 1 1051 249 83 0 0 chr1 61101369 61101405 -136094027 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1051 267 382 33 83 chr1 61101405 61101511 -136093921 + MLT1K LTR MaLR 488 593 -2 1 1051 216 0 0 0 chr1 61101552 61101576 -136093856 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1051 252 0 0 0 chr1 61101576 61101604 -136093828 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1051 583 285 21 48 chr1 61101627 61101815 -136093617 - B4 SINE B4 -109 183 1 1 1051 384 355 54 40 chr1 61101816 61102039 -136093393 - L1MCb LINE L1 -5812 233 8 1 1051 538 242 38 8 chr1 61102699 61102832 -136092600 + B1_Mur1 SINE Alu 10 146 -3 1 1051 279 71 0 0 chr1 61102969 61103011 -136092421 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1051 872 250 33 14 chr1 61103621 61103832 -136091600 - B3 SINE B2 0 216 2 1 1051 820 105 14 0 chr1 61103848 61103991 -136091441 + (TC)n Simple_repeat Simple_repeat 1 145 0 1 1051 234 0 0 0 chr1 61104008 61104034 -136091398 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1051 483 340 112 26 chr1 61104536 61104805 -136090627 + LTR16E2 LTR ERVL 258 549 -19 1 1051 306 249 8 186 chr1 61104933 61105077 -136090355 + B1F SINE Alu 3 120 -29 1 1051 265 316 0 48 chr1 61105066 61105149 -136090283 + ID4_ SINE ID 5 83 0 1 1051 258 235 83 56 chr1 61105217 61105325 -136090107 - LTR33 LTR ERVL 0 515 405 1 1051 369 0 0 0 chr1 61105405 61105446 -136089986 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1051 21 0 0 0 chr1 61105744 61105765 -136089667 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 2741 236 59 34 chr1 61105817 61106747 -136088685 - Lx9 LINE L1 -6 7638 6686 1 1051 261 75 0 0 chr1 61107214 61107254 -136088178 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1051 1145 259 72 64 chr1 61107592 61107968 -136087464 - MTE2a LTR MaLR 0 379 1 2 1051 446 0 19 0 chr1 61108296 61108350 -136087082 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 2 1051 716 283 76 38 chr1 61108465 61108741 -136086691 - L1MA4 LINE L1 -367 5933 5646 2 1051 285 29 0 0 chr1 61108741 61108775 -136086657 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1051 716 272 56 7 chr1 61108775 61108927 -136086505 - L1MA4 LINE L1 -655 5645 5493 2 1051 312 94 0 0 chr1 61112584 61112637 -136082795 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1051 2001 46 13 8 chr1 61113248 61113487 -136081945 - L1_Mus1 LINE L1 0 6567 6328 2 1051 323 269 141 16 chr1 61113768 61113889 -136081543 - MLT1B LTR MaLR -4 386 251 2 1051 475 53 0 26 chr1 61114079 61114156 -136081276 + (CTAGT)n Simple_repeat Simple_repeat 1 75 0 2 1051 363 293 24 8 chr1 61117785 61117909 -136077523 + MIRb SINE MIR 72 197 -71 2 1051 22 0 0 0 chr1 61117968 61117990 -136077442 + AT_rich Low_complexity Low_complexity 1 22 0 2 1051 873 107 35 12 chr1 61118084 61118255 -136077177 + CT-rich Low_complexity Low_complexity 3 177 0 2 1051 525 58 0 0 chr1 61118255 61118324 -136077108 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2 1051 256 347 10 48 chr1 61118326 61118429 -136077003 - PB1D10 SINE Alu -14 103 5 2 1051 292 240 0 62 chr1 61118655 61118735 -136076697 - L2a LINE L2 -17 3409 3335 2 1051 297 281 119 42 chr1 61119563 61119823 -136075609 - L1M5 LINE L1 -280 5844 5565 2 1051 239 268 47 28 chr1 61119857 61119977 -136075455 - L1M5 LINE L1 -644 5480 5357 2 1051 235 249 57 136 chr1 61120100 61120365 -136075067 - Lx9 LINE L1 0 7644 7401 2 1051 860 263 93 81 chr1 61121732 61122097 -136073335 - L1ME2z LINE L1 -12 6432 6046 2 1051 1200 211 24 5 chr1 61122097 61122306 -136073126 + B3 SINE B2 1 213 -3 2 1051 860 263 93 81 chr1 61122306 61122358 -136073074 - L1ME2z LINE L1 -399 6045 6010 2 1051 462 36 0 0 chr1 61122358 61122414 -136073018 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 1051 798 266 137 54 chr1 61122416 61122861 -136072571 - L1ME2z LINE L1 -509 5935 5454 2 1051 346 299 28 28 chr1 61123097 61123238 -136072194 - MIRb SINE MIR -43 225 85 2 1051 181 306 137 29 chr1 61124033 61124208 -136071224 - L2c LINE L2 -1 3386 3193 2 1051 477 0 0 0 chr1 61124314 61124367 -136071065 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1051 2787 56 1 0 chr1 61125541 61125892 -136069540 - L1_Mus2 LINE L1 -927 5639 5288 2 1051 8515 36 2 0 chr1 61125899 61127404 -136068028 - L1Md_T LINE L1 -1 6581 5074 2 1051 3207 66 2 19 chr1 61127404 61127819 -136067613 + L1Md_F2 LINE L1 6173 6580 -2 2 1051 715 274 107 76 chr1 61129776 61130104 -136065328 + LTR40c LTR ERVL 128 465 0 2 1051 368 356 45 25 chr1 61130104 61130346 -136065086 + HAL1 LINE L1 1749 1995 -512 2 1051 341 273 79 85 chr1 61130511 61130675 -136064757 + MLT1J2-int LTR MaLR 598 760 -627 2 1051 880 347 81 43 chr1 61130687 61131241 -136064191 + MLT1J2-int LTR MaLR 811 1385 -2 2 1051 373 321 44 7 chr1 61131415 61131623 -136063809 + MLT1J2 LTR MaLR 226 440 -4 2 1051 801 207 7 14 chr1 61131679 61131826 -136063606 - B1F SINE Alu -3 146 1 2 1051 696 74 0 0 chr1 61133100 61133195 -136062237 + (GA)n Simple_repeat Simple_repeat 2 96 0 2 1051 24 67 0 0 chr1 61134992 61135037 -136060395 + AT_rich Low_complexity Low_complexity 1 45 0 2 1051 2890 267 116 33 chr1 61135037 61136017 -136059415 - Lx9 LINE L1 0 7644 6583 2 1051 186 43 0 0 chr1 61136017 61136040 -136059392 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 2 1051 763 70 26 17 chr1 61136041 61136158 -136059274 + Lx LINE L1 6536 6653 -1 2 1051 243 278 40 20 chr1 61136493 61136592 -136058840 - MIR3 SINE MIR -13 195 95 2 1051 1209 266 25 33 chr1 61137521 61137928 -136057504 - MTE2b LTR MaLR -1 378 1 2 1051 225 0 0 0 chr1 61138448 61138473 -136056959 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1051 212 175 25 0 chr1 61138807 61138847 -136056585 + GA-rich Low_complexity Low_complexity 2 42 0 2 1051 233 255 18 18 chr1 61139298 61139354 -136056078 + B4A SINE B4 156 211 -81 2 1051 477 0 0 0 chr1 61140176 61140229 -136055203 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1051 370 269 151 54 chr1 61140829 61141014 -136054418 - MLT1K LTR MaLR -2 593 391 2 1051 1403 257 19 19 chr1 61141040 61141349 -136054083 + MTE2b LTR MaLR 1 309 -70 2 1051 445 255 31 0 chr1 61141350 61141448 -136053984 + BC1_Mm scRNA scRNA 6 106 -46 2 1051 943 265 74 68 chr1 61141542 61141894 -136053538 - ORR1E LTR MaLR 0 359 6 2 1051 336 299 34 82 chr1 61143908 61144054 -136051378 - MER5B DNA MER1_type -5 173 35 2 1051 336 24 0 0 chr1 61146028 61146069 -136049363 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1051 848 319 57 21 chr1 61146716 61146858 -136048574 - B4A SINE B4 -2 290 136 2 1051 1199 172 77 0 chr1 61146858 61147067 -136048365 - URR1A DNA MER1_type -1 225 1 2 1051 848 319 57 21 chr1 61147067 61147203 -136048229 - B4A SINE B4 -157 135 2 2 1051 194 156 0 22 chr1 61148568 61148614 -136046818 + G-rich Low_complexity Low_complexity 6 50 0 2 1051 3235 133 7 92 chr1 61148770 61149224 -136046208 - RLTR24 LTR ERV1 0 529 118 2 1051 369 0 0 0 chr1 61149224 61149265 -136046167 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1051 3235 133 7 92 chr1 61149265 61149388 -136046044 - RLTR24 LTR ERV1 -412 117 1 2 1051 1180 131 23 0 chr1 61149424 61149600 -136045832 - Lx4A LINE L1 -132 6926 6747 2 1051 423 96 0 12 chr1 61149606 61149690 -136045742 + Lx4A LINE L1 6973 7055 -3 2 1051 23 54 0 0 chr1 61149690 61149727 -136045705 + AT_rich Low_complexity Low_complexity 1 37 0 2 1051 468 0 0 0 chr1 61150108 61150160 -136045272 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1051 408 288 0 12 chr1 61150160 61150231 -136045201 - RSINE1 SINE B4 -9 156 86 2 1051 392 323 206 8 chr1 61150520 61150651 -136044781 + RSINE1 SINE B4 9 165 0 2 1051 21 0 0 0 chr1 61150674 61150695 -136044737 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 332 236 67 11 chr1 61150758 61150848 -136044584 - MER89 LTR ERV1 -35 524 430 2 1051 233 184 0 0 chr1 61151189 61151227 -136044205 + MER34 LTR ERV1 381 418 -124 2 1051 363 282 113 17 chr1 61151350 61151527 -136043905 - MER89 LTR ERV1 -184 375 182 2 1051 232 278 40 27 chr1 61151535 61151609 -136043823 - MER89 LTR ERV1 -484 75 1 2 1051 22 35 0 0 chr1 61152821 61152850 -136042582 + AT_rich Low_complexity Low_complexity 1 29 0 2 1051 765 35 8 74 chr1 61153127 61153249 -136042183 + Lx LINE L1 6540 6653 -1 2 1051 1434 65 48 0 chr1 61153981 61154167 -136041265 + B2_Mm2 SINE B2 1 195 0 2 1051 228 295 21 10 chr1 61154497 61154593 -136040839 - L1M5 LINE L1 -3106 3040 2944 2 1051 24 0 0 0 chr1 61156105 61156129 -136039303 + AT_rich Low_complexity Low_complexity 1 24 0 2 1051 477 90 0 0 chr1 61156469 61156536 -136038896 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 2 1051 1174 66 0 0 chr1 61157377 61157514 -136037918 + B1_Mus2 SINE Alu 1 137 -10 2 1051 273 29 0 0 chr1 61157514 61157548 -136037884 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1051 286 279 206 7 chr1 61157570 61157586 -136037846 + MIRc SINE MIR 14 29 -239 2 1051 468 35 0 0 chr1 61157586 61157644 -136037788 + (TGG)n Simple_repeat Simple_repeat 1 58 0 2 1051 286 292 170 19 chr1 61157644 61157846 -136037586 + MIRc SINE MIR 30 253 -15 2 1051 246 217 101 0 chr1 61158145 61158214 -136037218 - MIR SINE MIR -82 180 105 2 1051 580 269 105 38 chr1 61158717 61158926 -136036506 - LTR16C LTR ERVL -261 228 6 2 1051 198 0 0 0 chr1 61160099 61160121 -136035311 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1051 487 146 0 80 chr1 61161503 61161615 -136033817 + L1_Mus3 LINE L1 6535 6637 -1 2 1051 231 318 102 75 chr1 61161719 61161906 -136033526 - MIR SINE MIR -38 224 33 2 1051 298 346 65 65 chr1 61162427 61162829 -136032603 + L2b LINE L2 2243 2644 -775 2 1051 372 336 184 32 chr1 61163005 61163410 -136032022 + L2b LINE L2 2680 3150 -225 2 1051 198 369 33 26 chr1 61163469 61163622 -136031810 + L2b LINE L2 3263 3416 -10 2 1051 245 243 70 70 chr1 61163861 61163976 -136031456 - MLT1J2 LTR MaLR 0 448 334 2 1051 399 335 158 43 chr1 61166139 61166647 -136028785 - L4 LINE RTE -59 1970 1405 2 1051 226 327 96 0 chr1 61166726 61166830 -136028602 - LTR89 LTR ERVL? -22 857 744 2 1051 2861 228 53 45 chr1 61167316 61168075 -136027357 + RMER1C Other Other 578 1342 0 2 1051 441 198 180 8 chr1 61170277 61170399 -136025033 + B1_Mus2 SINE Alu 3 145 -2 2 1051 193 57 57 0 chr1 61170399 61170434 -136024998 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 1051 396 59 0 0 chr1 61171623 61171674 -136023758 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1051 432 256 60 60 chr1 61172448 61172614 -136022818 - MER3 DNA MER1_type -37 172 7 2 1051 1557 39 0 5 chr1 61172713 61172919 -136022513 - ORR1A0 LTR MaLR 0 346 142 2 1051 709 81 0 0 chr1 61172939 61173038 -136022394 + B1_Mus2 SINE Alu 42 140 -7 2 1051 209 194 0 0 chr1 61173043 61173079 -136022353 + A-rich Low_complexity Low_complexity 3 38 0 2 1051 21 0 0 0 chr1 61173742 61173763 -136021669 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 24 32 0 0 chr1 61173882 61173913 -136021519 + AT_rich Low_complexity Low_complexity 1 31 0 2 1051 334 288 0 83 chr1 61174208 61174329 -136021103 - B4A SINE B4 -173 119 9 2 1051 244 234 0 0 chr1 61174606 61174653 -136020779 - Lx8 LINE L1 -377 7096 7050 2 1051 1483 261 58 77 chr1 61174681 61175319 -136020113 - L1MC4a LINE L1 -1965 5917 5292 2 1051 258 314 92 36 chr1 61175557 61175752 -136019680 - L1MC4a LINE L1 -1053 5093 4888 2 1051 27 0 0 0 chr1 61175847 61175874 -136019558 + AT_rich Low_complexity Low_complexity 1 27 0 2 1051 355 235 9 38 chr1 61176314 61176420 -136019012 + MLT1A1 LTR MaLR 304 406 -2 2 1051 362 21 0 21 chr1 61177903 61177951 -136017481 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1051 4500 285 71 102 chr1 61177983 61178026 -136017406 - Tigger1 DNA MER2_type 0 2418 2362 2 1051 351 0 0 0 chr1 61178026 61178065 -136017367 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2 1051 4500 285 71 102 chr1 61178065 61178561 -136016871 - Tigger1 DNA MER2_type -57 2361 1840 2 1051 183 42 0 0 chr1 61178561 61178585 -136016847 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1051 4500 285 71 102 chr1 61178585 61179060 -136016372 - Tigger1 DNA MER2_type -579 1839 1399 2 1051 1071 120 72 0 chr1 61179060 61179227 -136016205 + B2_Mm1t SINE B2 1 179 -14 2 1051 4500 285 71 102 chr1 61179227 61179831 -136015601 - Tigger1 DNA MER2_type -1020 1398 957 2 1051 2391 165 69 79 chr1 61179831 61180365 -136015067 - RLTR24 LTR ERV1 0 529 1 2 1051 4500 285 71 102 chr1 61180365 61181237 -136014195 - Tigger1 DNA MER2_type -1462 956 4 2 1051 487 278 75 10 chr1 61181271 61181471 -136013961 - L1MA9 LINE L1 -4 6308 6096 3 1051 335 270 16 0 chr1 61181488 61181610 -136013822 + ID4_ SINE ID 8 129 -23 3 1051 312 303 90 0 chr1 61181621 61181766 -136013666 - L1MA9 LINE L1 -187 6125 5968 3 1051 1320 252 62 57 chr1 61181763 61182135 -136013297 - L1M2 LINE L1 -2996 3844 3488 3 1051 699 177 77 0 chr1 61182135 61182265 -136013167 + B1_Mus1 SINE Alu 1 140 -8 3 1051 1320 246 59 49 chr1 61182265 61182448 -136012984 - L1M2 LINE L1 -3578 3522 3336 3 1051 638 303 52 0 chr1 61182492 61182703 -136012729 + ID_B1 SINE B4 2 223 -1 3 1051 798 196 120 11 chr1 61182946 61183137 -136012295 + B3 SINE B2 5 216 0 3 1051 22 35 0 0 chr1 61183145 61183174 -136012258 + AT_rich Low_complexity Low_complexity 1 29 0 3 1051 1063 296 88 50 chr1 61183213 61184224 -136011208 - L1M2 LINE L1 -4238 2869 1744 3 1051 1697 258 52 65 chr1 61184422 61184977 -136010455 - RMER15 LTR ERVL 0 575 28 3 1051 290 353 114 0 chr1 61185202 61185369 -136010063 - L1M2 LINE L1 -5814 1223 1038 3 1051 1134 236 148 14 chr1 61185456 61185800 -136009632 + MTD LTR MaLR 10 399 -20 3 1051 466 256 14 79 chr1 61185850 61185990 -136009442 - L1M2 LINE L1 -6140 897 767 3 1051 405 86 0 0 chr1 61187372 61187430 -136008002 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1051 195 114 0 0 chr1 61188341 61188376 -136007056 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 1051 756 301 52 49 chr1 61188407 61188756 -136006676 - MLT1D LTR MaLR -4 501 152 3 1051 359 316 37 37 chr1 61188906 61189067 -136006365 - LTR16E1 LTR ERVL -56 482 322 3 1051 428 144 53 12 chr1 61190072 61190241 -136005191 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 3 1051 329 308 30 99 chr1 61190865 61191067 -136004365 - MER5A DNA MER1_type -1 188 1 3 1051 431 146 122 20 chr1 61191714 61191812 -136003620 + B3 SINE B2 23 130 -86 3 1051 980 273 67 27 chr1 61192742 61193148 -136002284 - L1MA5 LINE L1 -370 5930 5509 3 1051 373 208 31 10 chr1 61193769 61193866 -136001566 - B4 SINE B4 -188 104 6 3 1051 387 0 0 0 chr1 61194247 61194290 -136001142 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1051 364 264 73 52 chr1 61194667 61194803 -136000629 + B3A SINE B2 13 151 -47 3 1051 23 0 0 0 chr1 61194807 61194830 -136000602 + AT_rich Low_complexity Low_complexity 1 23 0 3 1051 252 203 70 28 chr1 61195257 61195328 -136000104 - PB1D9 SINE Alu -8 112 39 3 1051 561 253 140 0 chr1 61197256 61197406 -135998026 + B4 SINE B4 111 281 -11 3 1051 369 0 0 0 chr1 61197433 61197474 -135997958 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1051 225 132 0 0 chr1 61199815 61199853 -135995579 + (GGGAGA)n Simple_repeat Simple_repeat 3 40 0 3 1051 231 359 18 40 chr1 61201061 61201274 -135994158 - MIRc SINE MIR -14 254 42 3 1051 200 237 0 17 chr1 61201556 61201616 -135993816 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1051 254 300 40 0 chr1 61203036 61203136 -135992296 - MIR3 SINE MIR -39 169 66 3 1051 285 327 76 57 chr1 61203329 61203540 -135991892 + MamSINE1 SINE tRNA 12 226 -64 3 1051 375 208 240 0 chr1 61204462 61204558 -135990874 - B1_Mur1 SINE Alu -18 131 13 3 1051 450 53 0 0 chr1 61204851 61204908 -135990524 + (TCC)n Simple_repeat Simple_repeat 1 57 0 3 1051 209 347 15 61 chr1 61205245 61205377 -135990055 - L3 LINE CR1 -148 4341 4216 3 1051 1220 235 38 19 chr1 61206020 61206393 -135989039 - ORSL-2b DNA Tip100 -111 397 18 3 1051 416 293 96 55 chr1 61207243 61207514 -135987918 - L3 LINE CR1 -687 3802 3521 3 1051 430 184 0 13 chr1 61209438 61209515 -135985917 - PB1D10 SINE Alu -4 113 38 3 1051 488 347 73 7 chr1 61209760 61210047 -135985385 + MARNA DNA Mariner 71 376 -210 3 1052 244 325 0 78 chr1 61211839 61211929 -135983503 - ID4 SINE ID 0 83 1 3 1052 271 356 17 17 chr1 61211933 61212053 -135983379 - B1F SINE Alu -17 132 13 3 1052 321 26 0 0 chr1 61213598 61213636 -135981796 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 3 1052 450 214 145 0 chr1 61213636 61213767 -135981665 - Lx5 LINE L1 -3 7047 6898 3 1052 493 265 45 0 chr1 61213869 61214001 -135981431 - ID_B1 SINE B4 -1 223 86 3 1052 198 0 0 0 chr1 61215039 61215061 -135980371 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 3 1052 267 31 0 0 chr1 61215061 61215093 -135980339 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 3 1052 213 366 0 24 chr1 61215098 61215182 -135980250 - ID4_ SINE ID 0 83 2 3 1052 468 0 0 0 chr1 61216769 61216821 -135978611 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1052 381 43 0 0 chr1 61217171 61217218 -135978214 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 3 1052 527 280 155 0 chr1 61217239 61217432 -135978000 - ID_B1 SINE B4 0 224 2 3 1052 188 34 0 33 chr1 61219465 61219495 -135975937 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 3 1052 604 233 86 19 chr1 61221741 61221903 -135973529 + MER45A DNA Tip100 1 173 -5 3 1052 11215 102 63 49 chr1 61222197 61223449 -135971983 - L1_Mus2 LINE L1 0 6566 5300 3 1052 1978 30 0 29 chr1 61223449 61223691 -135971741 - L1Md_A LINE L1 -1 6581 6347 3 1052 11215 103 5 8 chr1 61223691 61224694 -135970738 - L1_Mus2 LINE L1 -584 5299 4295 3 1052 1132 219 137 9 chr1 61224825 61225153 -135970279 + ORR1D1 LTR MaLR 1 370 -4 3 1052 228 91 0 0 chr1 61225166 61225199 -135970233 - RLTR21 LTR ERVK 0 1572 1540 3 1052 4495 161 52 31 chr1 61225188 61226093 -135969339 - RMER12B LTR ERVK -480 924 1 3 1052 362 301 208 52 chr1 61226147 61226455 -135968977 - ORR1E LTR MaLR -1 358 3 3 1052 31 26 0 0 chr1 61226569 61226607 -135968825 + AT_rich Low_complexity Low_complexity 1 38 0 3 1052 813 213 24 92 chr1 61226623 61226777 -135968655 - B3 SINE B2 0 216 72 3 1052 2776 69 21 16 chr1 61226777 61227158 -135968274 - IAPEY_LTR LTR ERVK -2 383 1 3 1052 813 213 24 92 chr1 61227158 61227210 -135968222 - B3 SINE B2 -145 71 24 3 1052 1690 191 13 61 chr1 61227214 61227440 -135967992 - ORR1D1 LTR MaLR -1 373 165 3 1052 396 0 0 0 chr1 61227440 61227484 -135967948 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1052 1690 191 13 61 chr1 61227484 61227635 -135967797 - ORR1D1 LTR MaLR -210 164 14 3 1052 57 47 0 0 chr1 61227639 61227724 -135967708 + AT_rich Low_complexity Low_complexity 1 85 0 3 1052 684 196 46 108 chr1 61227946 61228186 -135967246 - URR1A DNA MER1_type 0 226 2 3 1052 207 0 0 0 chr1 61228273 61228296 -135967136 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1052 378 0 0 0 chr1 61230299 61230341 -135965091 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1052 189 0 0 0 chr1 61230745 61230766 -135964666 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1052 225 0 0 0 chr1 61231369 61231394 -135964038 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1052 209 243 28 14 chr1 61234540 61234611 -135960821 + (TTGG)n Simple_repeat Simple_repeat 3 74 0 3 1052 276 30 0 0 chr1 61235244 61235277 -135960155 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1052 809 319 37 11 chr1 61235339 61235612 -135959820 + B4 SINE B4 13 292 0 3 1052 421 330 0 22 chr1 61235651 61235831 -135959601 + (CATA)n Simple_repeat Simple_repeat 2 177 0 3 1052 330 183 0 0 chr1 61235859 61235930 -135959502 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1052 314 275 9 27 chr1 61235951 61236063 -135959369 + PB1D10 SINE Alu 1 110 -7 3 1052 423 0 0 0 chr1 61237165 61237212 -135958220 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1052 303 28 0 0 chr1 61238888 61238924 -135956508 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1052 1232 289 159 30 chr1 61239563 61239992 -135955440 - L1MA9 LINE L1 -1 6311 5803 3 1052 246 62 0 0 chr1 61239992 61240024 -135955408 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1052 1232 289 159 30 chr1 61240024 61240217 -135955215 - L1MA9 LINE L1 -510 5802 5595 3 1052 261 0 0 0 chr1 61240217 61240246 -135955186 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1052 1232 313 83 9 chr1 61240246 61240654 -135954778 - L1MA9 LINE L1 -706 5594 5146 3 1052 652 262 104 50 chr1 61240661 61240999 -135954433 + L1M3 LINE L1 4298 4653 -1487 3 1052 490 250 50 20 chr1 61241120 61241320 -135954112 - RMER17C LTR ERVK -202 208 3 3 1052 335 259 53 18 chr1 61241323 61241437 -135953995 + L1M3 LINE L1 4653 4770 -1373 3 1052 348 261 59 0 chr1 61241626 61241779 -135953653 + L1M3 LINE L1 4725 4888 -1255 3 1052 279 322 43 17 chr1 61242022 61242212 -135953220 + MIRb SINE MIR 12 206 -62 3 1052 288 0 0 0 chr1 61242327 61242359 -135953073 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1052 239 0 32 0 chr1 61242405 61242436 -135952996 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1052 544 270 21 85 chr1 61245466 61245749 -135949683 + MER33 DNA MER1_type 1 265 -59 3 1052 225 0 0 0 chr1 61246030 61246055 -135949377 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1052 425 268 78 46 chr1 61246139 61246358 -135949074 + Zaphod DNA Tip100 3764 3989 -42 3 1052 330 258 164 64 chr1 61247451 61247692 -135947740 - L1MB7 LINE L1 -1 6177 5917 3 1052 1637 228 75 31 chr1 61247708 61248189 -135947243 - L1MB7 LINE L1 -328 5856 5355 3 1052 460 288 61 70 chr1 61249700 61249913 -135945519 + MTE2a LTR MaLR 2 212 -167 3 1052 497 234 41 59 chr1 61250329 61250492 -135944940 + MTE2a LTR MaLR 236 408 -13 3 1052 325 295 62 0 chr1 61250592 61250704 -135944728 - PB1D7 SINE Alu -1 119 1 3 1052 214 319 11 11 chr1 61251294 61251386 -135944046 + MER5A DNA MER1_type 71 162 -27 3 1052 443 237 6 0 chr1 61251667 61251823 -135943609 + (TG)n Simple_repeat Simple_repeat 2 158 0 3 1052 764 199 14 0 chr1 61252170 61252316 -135943116 + B1_Mur2 SINE Alu 2 149 0 3 1052 383 366 61 34 chr1 61252548 61252842 -135942590 + L1M5 LINE L1 3942 4243 -1903 3 1052 351 0 0 0 chr1 61254420 61254459 -135940973 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1052 223 340 108 7 chr1 61255871 61256019 -135939413 - MIRc SINE MIR -62 206 44 3 1052 1041 168 10 30 chr1 61256539 61256742 -135938690 + URR1B DNA MER1_type 25 223 -2 3 1052 235 150 0 32 chr1 61256794 61256856 -135938576 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1052 280 307 0 0 chr1 61256856 61256931 -135938501 - B4A SINE B4 0 292 218 3 1052 490 311 23 60 chr1 61257218 61257521 -135937911 - L1ME1 LINE L1 -94 6085 5796 3 1052 186 43 0 0 chr1 61257546 61257569 -135937863 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1052 291 247 45 34 chr1 61257569 61257648 -135937784 - PB1D10 SINE Alu -10 107 25 3 1052 262 250 144 17 chr1 61257657 61257775 -135937657 - L1ME1 LINE L1 -383 5796 5664 3 1052 200 342 0 13 chr1 61258214 61258291 -135937141 + C-rich Low_complexity Low_complexity 1 76 0 3 1052 373 285 37 82 chr1 61258620 61258888 -135936544 - L1ME4a LINE L1 -184 5940 5685 4 1052 306 300 9 18 chr1 61259804 61259916 -135935516 - MER103 DNA DNA -47 119 9 4 1052 243 0 0 0 chr1 61261102 61261129 -135934303 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1052 484 197 0 30 chr1 61261623 61261754 -135933678 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 4 1052 246 32 0 0 chr1 61261856 61261887 -135933545 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1052 24 0 0 0 chr1 61264676 61264700 -135930732 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 447 68 0 0 chr1 61265023 61265082 -135930350 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1052 180 0 0 0 chr1 61265746 61265766 -135929666 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1052 39270 5 0 0 chr1 61266402 61271774 -135923658 + L1Md_A LINE L1 214 5586 -297 4 1052 9215 2 0 0 chr1 61271774 61272770 -135922662 + L1Md_A LINE L1 5587 6582 0 4 1052 450 337 12 104 chr1 61272834 61273162 -135922270 - LTR16B2 LTR ERVL -162 300 3 4 1052 241 227 11 22 chr1 61273182 61273272 -135922160 + CT-rich Low_complexity Low_complexity 3 91 0 4 1052 2197 126 14 6 chr1 61273933 61274291 -135921141 - ORR1B2 LTR MaLR -3 364 4 4 1052 185 0 40 0 chr1 61275000 61275025 -135920407 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1052 542 224 79 8 chr1 61275200 61275326 -135920106 - B1_Mus2 SINE Alu -8 139 5 4 1052 6041 202 78 8 chr1 61275762 61277007 -135918425 + Lx9 LINE L1 6312 7643 -1 4 1052 376 273 97 24 chr1 61278152 61278276 -135917156 - MamSINE1 SINE tRNA -153 137 5 4 1052 276 30 0 0 chr1 61278665 61278698 -135916734 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1052 680 316 56 11 chr1 61278724 61278990 -135916442 - B4 SINE B4 -14 278 1 4 1052 545 261 17 0 chr1 61279030 61279149 -135916283 - MTD LTR MaLR -1 418 298 4 1052 357 82 0 0 chr1 61280272 61280321 -135915111 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1052 256 255 30 10 chr1 61281110 61281209 -135914223 - L1M5 LINE L1 -426 5698 5598 4 1052 5552 55 17 3 chr1 61282659 61283365 -135912067 + L1Md_F2 LINE L1 5862 6577 -5 4 1052 270 0 0 0 chr1 61283564 61283594 -135911838 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1052 561 96 0 0 chr1 61283594 61283688 -135911744 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1052 210 336 58 72 chr1 61283714 61283852 -135911580 - MER5B DNA MER1_type -16 162 27 4 1052 276 30 0 0 chr1 61284257 61284290 -135911142 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1052 298 333 80 0 chr1 61284912 61285113 -135910319 - L1MA8 LINE L1 -181 6110 5894 4 1052 201 392 13 47 chr1 61287432 61287582 -135907850 - L2c LINE L2 0 3387 3243 4 1052 1081 113 6 6 chr1 61289628 61289806 -135905626 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 1052 433 298 0 9 chr1 61289879 61289994 -135905438 - B3A SINE B2 -84 114 1 4 1052 417 66 0 0 chr1 61291587 61291648 -135903784 + (TCTG)n Simple_repeat Simple_repeat 4 64 0 4 1052 271 309 24 12 chr1 61291677 61291759 -135903673 - ID4_ SINE ID 0 83 1 4 1052 1147 292 100 6 chr1 61292538 61292879 -135902553 - MTEa LTR MaLR -6 373 1 4 1052 468 35 0 0 chr1 61292933 61292991 -135902441 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1052 432 0 0 0 chr1 61293969 61294017 -135901415 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1052 2121 154 16 19 chr1 61294202 61294580 -135900852 + ORR1C1 LTR MaLR 2 378 0 4 1052 2154 203 7 2 chr1 61294588 61294998 -135900434 - Lx9 LINE L1 -776 6868 6457 4 1052 418 202 0 43 chr1 61295001 61295094 -135900338 - B4 SINE B4 -199 93 5 4 1052 27 0 0 0 chr1 61295538 61295565 -135899867 + AT_rich Low_complexity Low_complexity 1 27 0 4 1052 569 180 16 32 chr1 61296299 61296425 -135899007 - RMER1C Other Other -19 1323 1200 4 1052 549 156 0 0 chr1 61296425 61296521 -135898911 + GA-rich Low_complexity Low_complexity 1 96 0 4 1052 587 259 36 0 chr1 61296523 61296662 -135898770 - RMER1C Other Other -119 1223 1080 4 1052 817 291 46 20 chr1 61296664 61297077 -135898355 - RMER1B Other Other -513 829 165 4 1052 253 333 0 0 chr1 61297265 61297373 -135898059 - RMER1B Other Other -913 153 46 4 1052 21 36 0 0 chr1 61299977 61300005 -135895427 + AT_rich Low_complexity Low_complexity 1 28 0 4 1052 209 30 0 57 chr1 61300970 61301005 -135894427 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1052 380 200 11 0 chr1 61302846 61302941 -135892491 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 1052 274 267 40 112 chr1 61303162 61303314 -135892118 - MER34 LTR ERV1 -82 460 320 4 1052 22 0 0 0 chr1 61304350 61304372 -135891060 + AT_rich Low_complexity Low_complexity 1 22 0 4 1052 331 297 36 9 chr1 61304471 61304583 -135890849 - L1MC5 LINE L1 -50 7911 7797 4 1052 351 0 0 0 chr1 61304735 61304774 -135890658 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1052 519 286 18 46 chr1 61304782 61305112 -135890320 - L1ME2 LINE L1 -230 5934 5609 4 1052 443 300 116 59 chr1 61305196 61305672 -135889760 - L1ME2 LINE L1 -1252 4894 4370 4 1052 355 178 0 27 chr1 61305672 61305747 -135889685 - Lx8 LINE L1 -7 7466 7394 4 1052 374 300 116 59 chr1 61305747 61305847 -135889585 - L1ME2 LINE L1 -1777 4369 4285 4 1052 365 345 55 7 chr1 61306095 61306384 -135889048 - L1ME2 LINE L1 -3147 2999 2697 4 1052 373 316 134 26 chr1 61306443 61306674 -135888758 - L1ME2 LINE L1 -3418 2728 2473 4 1052 243 334 50 27 chr1 61306688 61307026 -135888406 - L1ME2 LINE L1 -3691 2455 2110 4 1052 21 71 0 0 chr1 61307026 61307068 -135888364 + AT_rich Low_complexity Low_complexity 1 42 0 4 1052 386 309 77 6 chr1 61307098 61307267 -135888165 - L1ME2 LINE L1 -4215 2027 1847 4 1052 1269 316 62 64 chr1 61307377 61307452 -135887980 - MER82 DNA MER2_type -13 640 566 4 1052 360 0 0 0 chr1 61307452 61307492 -135887940 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1052 1269 316 62 64 chr1 61307492 61308056 -135887376 - MER82 DNA MER2_type -88 565 2 4 1052 398 348 66 103 chr1 61308076 61308313 -135887119 - L1ME2 LINE L1 -4522 1720 1461 4 1052 2420 71 23 20 chr1 61308313 61308657 -135886775 + Lx3_Mus LINE L1 6657 7001 -8 4 1052 398 348 66 103 chr1 61308657 61308699 -135886733 - L1ME2 LINE L1 -4782 1460 1456 4 1052 1422 40 0 10 chr1 61308699 61309002 -135886430 + (GAA)n Simple_repeat Simple_repeat 1 300 0 4 1052 398 360 49 70 chr1 61309002 61309191 -135886241 - L1ME2 LINE L1 -4754 1488 1298 4 1052 257 402 68 33 chr1 61309862 61310170 -135885262 + L2a LINE L2 2927 3238 -188 4 1052 757 255 135 12 chr1 61310170 61310496 -135884936 - MER47A DNA MER2_type 0 366 1 4 1052 257 402 68 33 chr1 61310496 61310581 -135884851 + L2a LINE L2 3239 3334 -92 4 1052 566 274 0 0 chr1 61312183 61312362 -135883070 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 1052 1080 131 62 11 chr1 61312457 61312635 -135882797 - B2_Mm2 SINE B2 -8 187 1 4 1052 818 294 43 32 chr1 61312636 61312889 -135882543 - MLT1A0 LTR MaLR -106 259 4 4 1052 423 0 0 0 chr1 61313282 61313329 -135882103 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1052 302 312 113 10 chr1 61313336 61313433 -135881999 - L1MC4 LINE L1 -1069 6973 6867 4 1052 381 307 97 78 chr1 61313598 61313896 -135881536 - LTR16E2 LTR ERVL -2 566 237 4 1052 306 0 0 0 chr1 61314222 61314256 -135881176 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1052 208 332 116 98 chr1 61314256 61314706 -135880726 + L2 LINE L2 2368 2825 -594 4 1052 207 250 0 0 chr1 61314870 61314970 -135880462 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1052 2054 190 65 0 chr1 61315189 61315351 -135880081 + MTD LTR MaLR 1 168 -251 4 1052 2103 99 6 66 chr1 61315351 61315698 -135879734 - ORR1A4 LTR MaLR 0 329 4 4 1052 2054 190 65 0 chr1 61315698 61315919 -135879513 + MTD LTR MaLR 169 408 -11 4 1052 387 41 0 0 chr1 61316264 61316313 -135879119 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1052 401 264 0 7 chr1 61316344 61316493 -135878939 + (TG)n Simple_repeat Simple_repeat 2 149 0 4 1052 1041 274 86 62 chr1 61316769 61316962 -135878470 - Lx8 LINE L1 0 7473 7284 4 1052 2347 150 35 13 chr1 61316962 61317360 -135878072 + MTB_Mm LTR MaLR 1 407 0 4 1052 1041 274 86 62 chr1 61317360 61317673 -135877759 - Lx8 LINE L1 -190 7283 6953 4 1052 363 121 0 0 chr1 61317673 61317731 -135877701 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1052 1041 274 86 62 chr1 61317731 61317760 -135877672 - Lx8 LINE L1 -521 6952 6924 4 1052 756 315 66 8 chr1 61318036 61318279 -135877153 + B4 SINE B4 2 258 -34 4 1052 579 71 0 0 chr1 61318287 61318372 -135877060 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1052 239 334 59 8 chr1 61318830 61318961 -135876471 - MIR3 SINE MIR -11 197 62 4 1052 24 0 0 0 chr1 61319086 61319110 -135876322 + AT_rich Low_complexity Low_complexity 1 24 0 4 1052 496 279 70 0 chr1 61319124 61319253 -135876179 - MER54B LTR ERVL -74 719 582 4 1052 1458 266 23 48 chr1 61319265 61319664 -135875768 - MER54B LTR ERVL -293 500 112 4 1052 22 0 0 0 chr1 61319953 61319975 -135875457 + AT_rich Low_complexity Low_complexity 1 22 0 4 1052 189 0 0 0 chr1 61323558 61323579 -135871853 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1052 187 54 54 0 chr1 61324614 61324651 -135870781 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1052 484 278 8 16 chr1 61324945 61325073 -135870359 + MER45A DNA Tip100 52 178 0 4 1052 22 35 0 0 chr1 61325273 61325302 -135870130 + AT_rich Low_complexity Low_complexity 1 29 0 4 1052 621 344 50 66 chr1 61325416 61325734 -135869698 - LTR16A LTR ERVL -79 372 60 4 1052 396 0 0 0 chr1 61325974 61326018 -135869414 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1052 885 321 18 70 chr1 61326404 61326689 -135868743 - B4 SINE B4 -8 284 15 4 1052 225 367 109 50 chr1 61328360 61328681 -135866751 + MLT1K LTR MaLR 230 569 -26 4 1052 378 0 0 0 chr1 61329034 61329076 -135866356 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1052 259 250 0 30 chr1 61329078 61329144 -135866288 - MER46C DNA MER2_type -11 327 264 4 1052 21 0 0 0 chr1 61329230 61329251 -135866181 + AT_rich Low_complexity Low_complexity 1 21 0 4 1052 207 300 196 20 chr1 61329601 61329754 -135865678 - MIRb SINE MIR -49 219 40 4 1052 369 277 140 13 chr1 61331691 61331841 -135863591 + MLT1D LTR MaLR 3 171 -334 4 1052 1462 264 80 17 chr1 61331841 61332376 -135863056 + Lx8 LINE L1 6562 7130 -343 4 1052 334 339 135 21 chr1 61332380 61332573 -135862859 + MLT1D LTR MaLR 168 382 -123 4 1052 883 78 0 91 chr1 61333540 61333738 -135861694 + CT-rich Low_complexity Low_complexity 1 180 0 4 1052 214 364 33 7 chr1 61334241 61334393 -135861039 + L2a LINE L2 3221 3376 -50 4 1052 450 0 0 0 chr1 61336103 61336153 -135859279 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1052 1220 146 52 5 chr1 61336210 61336423 -135859009 - Lx2 LINE L1 0 6997 6775 4 1052 5316 106 28 1 chr1 61336421 61337180 -135858252 - Lx2 LINE L1 -352 6645 5867 4 1052 423 0 0 0 chr1 61337770 61337817 -135857615 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1052 504 0 0 0 chr1 61338003 61338059 -135857373 + (TCC)n Simple_repeat Simple_repeat 3 58 0 4 1052 615 27 0 0 chr1 61339520 61339593 -135855839 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1052 324 0 0 0 chr1 61339607 61339643 -135855789 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1052 2107 127 6 9 chr1 61339662 61339979 -135855453 - Lx2 LINE L1 -160 5723 5408 4 1052 6515 102 19 12 chr1 61339969 61340897 -135854535 + Lx LINE L1 5704 6638 -16 5 1052 411 45 0 43 chr1 61340897 61340966 -135854466 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 131 1335 208 176 6 chr1 61341388 61341741 -135853691 - Lx9 LINE L1 -160 7484 7072 5 1053 2568 192 23 64 chr1 61341740 61342303 -135853129 + Lx9 LINE L1 6564 7103 -541 5 1053 320 354 138 47 chr1 61342885 61343161 -135852271 - MLT1M LTR MaLR -311 361 61 5 1053 243 176 39 0 chr1 61343326 61343377 -135852055 - MIRc SINE MIR -5 263 211 5 1053 217 256 25 25 chr1 61344009 61344089 -135851343 + L2c LINE L2 3044 3123 -264 5 1053 209 376 0 44 chr1 61344225 61344339 -135851093 + L2c LINE L2 3284 3392 -34 5 1053 548 320 63 54 chr1 61344581 61344931 -135850501 + Lx8 LINE L1 7119 7471 -2 5 1053 1116 94 88 0 chr1 61345473 61345643 -135849789 + B2_Mm2 SINE B2 2 186 -9 5 1053 378 0 0 0 chr1 61345681 61345723 -135849709 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1053 1625 196 60 16 chr1 61348997 61349387 -135846045 + MTD LTR MaLR 1 398 -21 5 1053 327 25 0 0 chr1 61350969 61351009 -135844423 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1053 201 159 0 0 chr1 61351010 61351054 -135844378 + GA-rich Low_complexity Low_complexity 2 45 0 5 1053 411 92 0 0 chr1 61351054 61351119 -135844313 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1053 459 0 0 0 chr1 61351119 61351169 -135844263 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1053 267 93 0 0 chr1 61352029 61352072 -135843360 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1053 540 30 0 0 chr1 61352674 61352740 -135842692 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1053 186 43 0 0 chr1 61353015 61353038 -135842394 + (CAT)n Simple_repeat Simple_repeat 2 24 0 5 1053 369 0 0 0 chr1 61353277 61353318 -135842114 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1053 252 0 0 0 chr1 61353318 61353345 -135842087 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1053 432 0 0 0 chr1 61354199 61354247 -135841185 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1053 315 0 0 0 chr1 61356162 61356197 -135839235 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1053 306 0 0 0 chr1 61356548 61356582 -135838850 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 5 1053 612 283 44 152 chr1 61356836 61357132 -135838300 - B4 SINE B4 -1 291 28 5 1053 240 254 0 0 chr1 61357132 61357187 -135838245 + L1ME2z LINE L1 6097 6151 -293 5 1053 242 114 0 0 chr1 61357391 61357426 -135838006 - B4A SINE B4 -255 37 3 5 1053 251 211 0 53 chr1 61360115 61360190 -135835242 - RMER1C Other Other -12 1330 1260 5 1053 626 252 28 95 chr1 61360127 61360412 -135835020 - Lx8 LINE L1 -2 7471 7206 5 1053 300 91 0 0 chr1 61360995 61361039 -135834393 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 5 1053 183 80 0 0 chr1 61361462 61361487 -135833945 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1053 762 288 40 4 chr1 61361933 61362160 -135833272 - Lx8 LINE L1 -146 7327 7093 5 1053 1312 99 118 5 chr1 61364219 61364422 -135831010 - URR1A DNA MER1_type 0 226 1 5 1053 401 111 0 0 chr1 61364528 61364677 -135830755 + L1_Mus2 LINE L1 6499 6566 0 5 1053 654 271 55 10 chr1 61364815 61365016 -135830416 + B3 SINE B2 1 210 -6 5 1053 247 294 39 19 chr1 61365337 61365441 -135829991 - Lx8 LINE L1 -479 6994 6889 5 1053 253 95 0 0 chr1 61365551 61365584 -135829848 + B1_Mur4 SINE Alu 107 139 -11 5 1053 216 0 0 0 chr1 61365584 61365608 -135829824 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 5 1053 252 293 0 58 chr1 61365629 61365716 -135829716 + MIRb SINE MIR 163 244 -24 5 1053 190 246 88 0 chr1 61365793 61365850 -135829582 + MIRb SINE MIR 207 268 0 5 1053 251 176 111 56 chr1 61366159 61366231 -135829201 + MIRc SINE MIR 131 206 -62 5 1053 266 299 170 30 chr1 61367649 61367749 -135827683 - MLT1K LTR MaLR -36 559 446 5 1053 261 326 134 6 chr1 61368107 61368286 -135827146 + MER3 DNA MER1_type 2 203 -6 5 1053 515 284 107 13 chr1 61369525 61369675 -135825757 + MER58A DNA MER1_type 11 174 -50 5 1053 411 21 0 0 chr1 61369927 61369975 -135825457 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1053 2098 306 55 13 chr1 61369996 61370740 -135824692 - MER21B LTR ERV1 -88 775 1 5 1053 1812 152 24 15 chr1 61374084 61374418 -135821014 - ORR1A1 LTR MaLR -8 338 2 5 1053 2738 139 153 14 chr1 61374458 61374968 -135820464 + RMER4B LTR ERVK 3 583 -2 5 1053 405 0 0 0 chr1 61378151 61378196 -135817236 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1053 233 314 111 14 chr1 61378739 61378946 -135816486 + LTR16B2 LTR ERVL 214 440 -22 5 1053 228 315 45 27 chr1 61379099 61379210 -135816222 + LTR16E2 LTR ERVL 7 119 -449 5 1053 318 368 77 14 chr1 61379240 61379447 -135815985 + LTR16E2 LTR ERVL 248 467 -101 5 1053 354 242 111 0 chr1 61379466 61379565 -135815867 - PB1D10 SINE Alu -7 110 1 5 1053 703 338 42 76 chr1 61380167 61380615 -135814817 + MLT1E2 LTR MaLR 80 512 -115 5 1053 785 259 38 43 chr1 61380764 61380974 -135814458 - B3 SINE B2 -6 210 2 5 1053 265 250 79 0 chr1 61380974 61381036 -135814396 - B4A SINE B4 -58 234 167 5 1053 1954 232 51 6 chr1 61383232 61383718 -135811714 + Lx9 LINE L1 7009 7516 -128 5 1053 216 127 18 35 chr1 61383723 61383780 -135811652 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 5 1053 544 212 29 0 chr1 61383827 61383964 -135811468 + Lx9 LINE L1 7502 7642 -2 5 1053 1031 115 159 77 chr1 61384926 61385133 -135810299 - URR1B DNA MER1_type 0 225 2 5 1053 4654 179 30 24 chr1 61385298 61386221 -135809211 - Lx2B LINE L1 -1 6999 6071 5 1053 627 151 251 22 chr1 61386770 61386953 -135808479 + URR1B DNA MER1_type 1 225 0 5 1053 1342 209 31 125 chr1 61387003 61387419 -135808013 + MTE2a LTR MaLR 1 377 -2 5 1053 752 209 4 0 chr1 61389201 61389457 -135805975 + (CA)n Simple_repeat Simple_repeat 1 256 0 5 1053 493 302 62 31 chr1 61392004 61392199 -135803233 + B3 SINE B2 6 206 -10 5 1053 5887 207 100 15 chr1 61392670 61394095 -135801337 - Lx9 LINE L1 -1 7643 6098 5 1053 1662 159 96 26 chr1 61394093 61394492 -135800940 - Lx9 LINE L1 -1696 5948 5483 5 1053 882 237 23 32 chr1 61394685 61394903 -135800529 - B3 SINE B2 0 216 1 5 1053 7882 55 3 11 chr1 61396004 61397341 -135798091 - L1Md_F2 LINE L1 -2 6580 5258 5 1053 1372 96 0 2 chr1 61397340 61397537 -135797895 + L1Md_F2 LINE L1 5076 5292 -848 5 1053 248 241 0 0 chr1 61397924 61397978 -135797454 + PB1D7 SINE Alu 65 118 -2 5 1053 282 287 54 16 chr1 61398507 61398646 -135796786 + MIR SINE MIR 40 192 -76 5 1053 840 277 19 5 chr1 61400479 61400686 -135794746 - B3 SINE B2 -6 210 1 5 1053 2565 131 29 91 chr1 61400744 61401258 -135794174 + RLTR45 LTR ERVK 1 482 0 5 1053 496 291 25 31 chr1 61401547 61401710 -135793722 + B3 SINE B2 44 205 -11 5 1053 246 95 0 0 chr1 61402064 61402106 -135793326 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1053 1657 204 35 69 chr1 61402110 61402219 -135793213 + MTD LTR MaLR 1 114 -305 5 1053 4933 120 7 27 chr1 61402219 61402991 -135792441 - RMER6A LTR ERVK 0 756 1 5 1053 1657 204 35 69 chr1 61402991 61403313 -135792119 + MTD LTR MaLR 115 417 -2 5 1053 365 269 160 0 chr1 61403518 61403637 -135791795 + MLT1G1 LTR MaLR 435 572 -7 5 1053 282 291 62 12 chr1 61404606 61404686 -135790746 + MLT1K LTR MaLR 68 151 -338 5 1053 998 88 73 0 chr1 61404700 61404829 -135790603 + B1_Mm SINE Alu 1 139 -8 5 1053 423 52 0 0 chr1 61404829 61404887 -135790545 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 5 1053 206 132 19 0 chr1 61404895 61404948 -135790484 + A-rich Low_complexity Low_complexity 1 54 0 5 1053 366 346 75 61 chr1 61405167 61405462 -135789970 + MLT1K LTR MaLR 291 589 -6 5 1053 1131 81 0 13 chr1 61405477 61405627 -135789805 + B1_Mus1 SINE Alu 1 148 0 5 1053 342 0 0 0 chr1 61406381 61406419 -135789013 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1053 915 96 25 6 chr1 61407265 61407422 -135788010 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 5 1053 869 59 0 172 chr1 61407483 61407646 -135787786 - L1_Mus2 LINE L1 0 6566 6432 5 1053 1465 206 84 17 chr1 61408448 61408804 -135786628 + Lx9 LINE L1 7194 7573 -71 5 1053 243 0 0 0 chr1 61409582 61409609 -135785823 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1053 468 172 0 0 chr1 61409609 61409696 -135785736 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1053 468 0 0 0 chr1 61410045 61410097 -135785335 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1053 216 0 0 0 chr1 61410097 61410120 -135785312 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1053 1652 136 214 7 chr1 61411345 61411649 -135783783 - ORR1B2 LTR MaLR 0 367 1 5 1053 988 297 56 6 chr1 61412133 61412492 -135782940 + L3b LINE CR1 50 426 -56 5 1053 225 292 42 0 chr1 61412740 61412812 -135782620 + MIRc SINE MIR 123 197 -71 5 1053 622 74 0 0 chr1 61413454 61413535 -135781897 - L1_Mus3 LINE L1 -270 6366 6286 5 1053 1650 70 100 0 chr1 61413535 61413776 -135781656 + L1_Mus3 LINE L1 6360 6624 -14 5 1053 32 0 0 0 chr1 61413809 61413841 -135781591 + AT_rich Low_complexity Low_complexity 1 32 0 5 1053 452 244 37 66 chr1 61414679 61414815 -135780617 + RSINE1 SINE B4 3 134 -31 5 1053 21 57 0 0 chr1 61414833 61414868 -135780564 + AT_rich Low_complexity Low_complexity 1 35 0 5 1053 187 75 0 91 chr1 61415783 61415827 -135779605 + C-rich Low_complexity Low_complexity 3 42 0 5 1053 180 163 0 0 chr1 61417867 61417910 -135777522 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 5 1053 415 275 28 84 chr1 61417948 61418091 -135777341 - ID_B1 SINE B4 -87 137 3 5 1053 2047 87 0 143 chr1 61418671 61419048 -135776384 - L1Md_F2 LINE L1 -12 6570 6248 5 1053 41460 15 2 6 chr1 61419057 61425493 -135769939 - L1Md_A LINE L1 0 6582 176 5 1053 237 250 88 80 chr1 61426356 61426469 -135768963 - PB1D10 SINE Alu 0 117 4 5 1053 239 219 79 21 chr1 61427555 61427695 -135767737 + (TTATA)n Simple_repeat Simple_repeat 2 149 0 6 1053 2140 131 3 58 chr1 61428083 61428431 -135767001 - ORR1A4 LTR MaLR 0 329 1 6 1053 528 241 355 9 chr1 61428444 61428658 -135766774 + B4A SINE B4 2 289 -3 6 1053 530 350 0 0 chr1 61429024 61429184 -135766248 + RSINE1 SINE B4 3 162 -3 6 1053 282 160 0 0 chr1 61429775 61429825 -135765607 + GA-rich Low_complexity Low_complexity 3 52 0 6 1053 310 237 40 0 chr1 61431921 61431997 -135763435 - ID4_ SINE ID -3 80 2 6 1053 306 0 0 0 chr1 61431997 61432031 -135763401 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1053 349 287 29 29 chr1 61432032 61432136 -135763296 - PB1D10 SINE Alu -13 104 1 6 1053 1434 54 43 5 chr1 61432234 61432421 -135763011 + B2_Mm2 SINE B2 2 195 0 6 1053 486 159 0 0 chr1 61432942 61433049 -135762383 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 1053 21 0 0 0 chr1 61434401 61434422 -135761010 + AT_rich Low_complexity Low_complexity 1 21 0 6 1053 322 229 26 44 chr1 61434772 61434886 -135760546 - MER5A1 DNA MER1_type -43 123 12 6 1053 549 209 71 60 chr1 61435711 61435894 -135759538 + MER5A DNA MER1_type 5 189 0 6 1053 184 273 0 29 chr1 61435932 61436000 -135759432 + MER5A DNA MER1_type 48 113 -76 6 1053 881 314 70 32 chr1 61438253 61438595 -135756837 - MTE2b LTR MaLR -13 366 12 6 1053 408 71 0 0 chr1 61439319 61439375 -135756057 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1053 601 140 56 0 chr1 61439375 61439482 -135755950 - B1_Mus1 SINE Alu 0 148 36 6 1053 7524 104 7 24 chr1 61439482 61439671 -135755761 + L1_Mus3 LINE L1 4802 4990 -893 6 1053 1475 108 42 0 chr1 61439671 61439885 -135755547 + L1_Mus1 LINE L1 6344 6566 -1 6 1053 8172 82 9 10 chr1 61439885 61441542 -135753890 + L1_Mus3 LINE L1 4991 6638 0 6 1053 180 97 0 0 chr1 61441745 61441776 -135753656 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1053 215 315 91 9 chr1 61443469 61443580 -135751852 + MIR SINE MIR 18 143 -125 6 1053 270 0 0 0 chr1 61444088 61444118 -135751314 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1053 726 225 87 73 chr1 61445736 61445942 -135749490 - RMER13A LTR ERVK -469 391 183 6 1053 253 0 54 0 chr1 61445948 61445985 -135749447 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1053 1152 67 0 0 chr1 61445985 61446119 -135749313 - B1_Mus2 SINE Alu -9 138 5 6 1053 347 302 29 79 chr1 61446385 61446423 -135749009 + MT2B LTR ERVL 125 155 -446 6 1053 745 222 7 14 chr1 61446423 61446569 -135748863 + B1_Mus1 SINE Alu 3 147 -1 6 1053 273 316 12 25 chr1 61446857 61446938 -135748494 - ID4 SINE ID -2 81 2 6 1053 230 289 0 0 chr1 61447053 61447098 -135748334 - B1F SINE Alu -6 143 99 6 1053 180 0 0 0 chr1 61447406 61447426 -135748006 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1053 192 40 0 0 chr1 61447598 61447623 -135747809 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1053 1848 168 75 82 chr1 61447664 61448080 -135747352 - MTC LTR MaLR -8 413 1 6 1053 393 22 0 0 chr1 61448098 61448144 -135747288 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 6 1053 225 193 48 12 chr1 61448156 61448240 -135747192 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 6 1053 363 335 42 24 chr1 61448739 61448907 -135746525 + HAL1 LINE L1 787 957 -1550 6 1053 465 287 129 37 chr1 61449438 61449818 -135745614 + L1M6 LINE L1 1598 2012 -4484 6 1053 467 215 23 17 chr1 61449819 61449994 -135745438 + GA-rich Low_complexity Low_complexity 1 176 0 6 1053 231 185 56 0 chr1 61450432 61450486 -135744946 + GA-rich Low_complexity Low_complexity 2 58 0 6 1053 3010 60 44 5 chr1 61450957 61451342 -135744090 + MTB LTR MaLR 1 400 0 6 1053 2315 251 47 28 chr1 61453180 61454159 -135741273 + L1MC3 LINE L1 5132 6137 -1648 6 1053 2393 103 19 19 chr1 61454159 61454484 -135740948 - ORR1A3 LTR MaLR -1 325 1 6 1053 2315 271 59 31 chr1 61454484 61454535 -135740897 + L1MC3 LINE L1 6138 6189 -1596 6 1053 564 216 0 28 chr1 61455712 61455893 -135739539 + CT-rich Low_complexity Low_complexity 2 177 0 6 1053 211 73 23 47 chr1 61455894 61455937 -135739495 + (TCC)n Simple_repeat Simple_repeat 1 42 0 6 1053 845 104 0 15 chr1 61456070 61456206 -135739226 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 6 1053 213 208 38 0 chr1 61456702 61456755 -135738677 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1053 570 229 0 8 chr1 61456943 61457068 -135738364 - B1F SINE Alu -7 142 19 6 1053 722 296 98 7 chr1 61457341 61457715 -135737717 - L1MEc LINE L1 -1183 5136 4730 6 1053 382 268 2 0 chr1 61457844 61457930 -135737502 - PB1D10 SINE Alu -56 91 5 6 1053 314 246 0 15 chr1 61457874 61457940 -135737492 - B4A SINE B4 -147 145 81 6 1053 243 0 0 0 chr1 61457941 61457968 -135737464 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1053 639 293 0 65 chr1 61457972 61458140 -135737292 - B3A SINE B2 -41 157 1 6 1053 507 280 142 57 chr1 61458150 61458643 -135736789 - L1MEc LINE L1 -1772 4547 4013 6 1053 441 0 0 0 chr1 61458853 61458902 -135736530 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1053 502 305 84 33 chr1 61459042 61459374 -135736058 - L1MEc LINE L1 -6008 392 44 6 1053 421 354 27 59 chr1 61460597 61460816 -135734616 - LTR33B LTR ERVL -3 500 289 6 1053 731 238 147 46 chr1 61461060 61461408 -135734024 - ORSL-2b DNA Tip100 -53 455 73 6 1053 326 107 0 18 chr1 61461766 61461823 -135733609 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 6 1053 26 0 0 0 chr1 61462021 61462047 -135733385 + AT_rich Low_complexity Low_complexity 1 26 0 6 1053 206 274 47 112 chr1 61462133 61462240 -135733192 - MIRc SINE MIR -57 211 112 6 1053 741 257 68 25 chr1 61463160 61463439 -135731993 + B4A SINE B4 2 292 0 6 1053 546 37 24 12 chr1 61463479 61463561 -135731871 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1053 219 290 16 0 chr1 61463599 61463661 -135731771 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1053 245 262 150 0 chr1 61465147 61465227 -135730205 + MER81 DNA AcHobo 23 114 0 6 1053 614 298 85 144 chr1 61465746 61466205 -135729227 + MLT1C LTR MaLR 6 437 -30 6 1053 25 51 0 0 chr1 61466205 61466244 -135729188 + AT_rich Low_complexity Low_complexity 1 39 0 6 1053 1106 231 64 192 chr1 61466279 61466986 -135728446 + RLTR18 LTR ERVK 1 616 0 6 1053 586 323 106 46 chr1 61467155 61467505 -135727927 + MTEa LTR MaLR 1 371 -8 6 1053 863 174 0 7 chr1 61467510 61467649 -135727783 + B1_Mus1 SINE Alu 1 138 -10 6 1053 384 276 73 77 chr1 61468461 61468681 -135726751 + L1M5 LINE L1 5580 5798 -326 6 1053 195 42 0 0 chr1 61468916 61468940 -135726492 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1053 558 292 134 10 chr1 61469234 61469428 -135726004 - MER20 DNA MER1_type 0 219 2 6 1053 39 0 0 0 chr1 61470328 61470367 -135725065 + AT_rich Low_complexity Low_complexity 1 39 0 6 1053 500 312 25 31 chr1 61470378 61470540 -135724892 - RSINE1 SINE B4 -2 163 3 6 1053 244 294 142 35 chr1 61471778 61471891 -135723541 + MIR SINE MIR 27 151 -57 6 1054 243 379 96 6 chr1 61473293 61473471 -135721961 + MIR SINE MIR 15 208 -54 6 1054 300 63 31 31 chr1 61475094 61475159 -135720273 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 6 1054 1101 56 0 0 chr1 61476287 61476430 -135719002 + B1_Mus1 SINE Alu 6 148 0 6 1054 201 74 0 0 chr1 61478415 61478442 -135716990 + (CTG)n Simple_repeat Simple_repeat 1 27 0 6 1054 1723 150 37 91 chr1 61479851 61479999 -135715433 - RMER1C Other Other -1 1341 1199 6 1054 225 0 0 0 chr1 61479999 61480024 -135715408 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1054 1723 150 37 91 chr1 61480024 61480250 -135715182 - RMER1C Other Other -144 1198 988 6 1054 715 256 80 40 chr1 61480870 61481045 -135714387 - B3A SINE B2 -16 182 1 6 1054 224 333 52 10 chr1 61481839 61481936 -135713496 - MIR3 SINE MIR -48 160 60 6 1054 656 273 56 51 chr1 61482431 61482647 -135712785 - MamRep137 DNA TcMar? -74 370 154 6 1054 1160 76 0 20 chr1 61483635 61483782 -135711650 + B1_Mm SINE Alu 2 145 -2 6 1054 394 169 60 20 chr1 61483812 61483963 -135711469 + (CATATA)n Simple_repeat Simple_repeat 3 159 0 6 1054 5330 146 87 6 chr1 61484054 61484940 -135710492 + RMER17B LTR ERVK 1 958 0 6 1054 24 32 0 0 chr1 61484982 61485013 -135710419 + AT_rich Low_complexity Low_complexity 1 31 0 6 1054 265 303 112 15 chr1 61485171 61485305 -135710127 - L2a LINE L2 -1 3425 3279 6 1054 195 266 60 75 chr1 61485367 61485501 -135709931 - L2a LINE L2 -240 3186 3055 6 1054 938 65 0 0 chr1 61486753 61486877 -135708555 + B1_Mus1 SINE Alu 25 148 0 6 1054 256 258 61 51 chr1 61487103 61487201 -135708231 - MLT1J1 LTR MaLR -1 443 345 6 1054 1730 183 73 22 chr1 61487511 61487869 -135707563 - ORR1C2 LTR MaLR -3 381 6 6 1054 315 304 96 18 chr1 61487985 61488217 -135707215 - MLT1J1-int LTR MaLR -288 1121 814 6 1054 8671 26 0 0 chr1 61488570 61489712 -135705720 - L1Md_A LINE L1 0 6582 5441 6 1054 3118 212 80 58 chr1 61489864 61490729 -135704703 - RMER19B LTR ERVK -12 890 7 6 1054 1535 228 74 26 chr1 61490791 61491142 -135704290 - ORR1D2 LTR MaLR -2 368 1 6 1054 1941 187 24 37 chr1 61492496 61492906 -135702526 - MTD LTR MaLR -13 406 2 6 1054 533 386 61 10 chr1 61493046 61493357 -135702075 - LTR16C LTR ERVL -21 468 142 6 1054 282 314 0 0 chr1 61493733 61493803 -135701629 - ID4 SINE ID -4 79 10 6 1054 413 325 32 0 chr1 61493822 61493948 -135701484 - B1F SINE Alu -5 144 15 6 1054 284 119 203 0 chr1 61494909 61494968 -135700464 + B3A SINE B2 2 72 -126 6 1054 342 45 0 0 chr1 61495049 61495093 -135700339 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1054 366 325 133 19 chr1 61495110 61495498 -135699934 - LTR33A LTR ERVL -46 485 15 6 1054 276 30 0 0 chr1 61495947 61495980 -135699452 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1054 1557 154 63 60 chr1 61497123 61497441 -135697991 + Lx5 LINE L1 6717 7036 -14 6 1054 300 53 0 0 chr1 61497441 61497479 -135697953 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 6 1054 1557 154 63 60 chr1 61497479 61497491 -135697941 + Lx5 LINE L1 7037 7048 -2 6 1054 3153 40 0 0 chr1 61497663 61498009 -135697423 - ORR1A1 LTR MaLR 0 346 1 7 1054 198 138 0 0 chr1 61499000 61499029 -135696403 + MIRc SINE MIR 83 111 -157 7 1054 266 218 0 23 chr1 61499152 61499231 -135696201 + L1MC LINE L1 4885 4957 -1189 7 1054 398 126 138 0 chr1 61499300 61499387 -135696045 + L1MC LINE L1 4962 5060 -1086 7 1054 432 0 0 0 chr1 61499435 61499483 -135695949 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1054 689 256 195 40 chr1 61499549 61499796 -135695636 + L1MC LINE L1 5292 5586 -758 7 1054 423 0 0 0 chr1 61499796 61499843 -135695589 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 7 1054 689 256 195 40 chr1 61499843 61499965 -135695467 + L1MC LINE L1 5587 5717 -627 7 1054 237 33 0 0 chr1 61499965 61499995 -135695437 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1054 402 291 6 32 chr1 61500041 61500110 -135695322 + L1MC2 LINE L1 5744 5811 -533 1 1054 2981 134 12 56 chr1 61500110 61500294 -135695138 - MT2C_Mm LTR ERVL 0 475 291 2 1054 195 42 0 0 chr1 61500294 61500318 -135695114 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1054 2981 134 12 56 chr1 61500318 61500630 -135694802 - MT2C_Mm LTR ERVL -185 290 1 2 1054 402 291 6 32 chr1 61500630 61500716 -135694716 + L1MC2 LINE L1 5812 5895 -449 1 1054 289 320 101 120 chr1 61500810 61501176 -135694256 - ORR1E LTR MaLR 0 359 1 4 1054 312 280 24 71 chr1 61501193 61501227 -135694205 + L1MC2 LINE L1 6211 6241 -92 1 1054 351 0 0 0 chr1 61501227 61501266 -135694166 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1054 312 280 24 71 chr1 61501266 61501358 -135694074 + L1MC2 LINE L1 6242 6331 -2 1 1054 359 286 53 14 chr1 61501573 61501745 -135693687 + L1MD LINE L1 4023 4234 -1912 6 1054 1746 296 99 30 chr1 61501789 61502811 -135692621 + L1ME3 LINE L1 4566 5650 -512 7 1054 468 0 0 0 chr1 61502811 61502863 -135692569 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1054 758 311 91 66 chr1 61502863 61503219 -135692213 + L1ME3 LINE L1 5651 6022 -140 7 1054 218 194 0 0 chr1 61503279 61503315 -135692117 + (TATG)n Simple_repeat Simple_repeat 1 36 0 9 1054 232 176 27 93 chr1 61503319 61503394 -135692038 + L1MA6 LINE L1 6223 6292 -8 1 1054 27219 84 17 1 chr1 61503451 61507801 -135687631 + L1Md_F2 LINE L1 453 4876 -1007 1 1054 7876 69 1 11 chr1 61507802 61507822 -135687610 - L1Md_F2 LINE L1 0 6582 6564 1 1054 432 0 0 0 chr1 61507822 61507870 -135687562 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1 1054 7876 70 1 10 chr1 61507870 61508933 -135686499 - L1Md_F2 LINE L1 -19 6563 5509 1 1054 5743 70 0 0 chr1 61508930 61509658 -135685774 + L1Md_F2 LINE L1 4860 5587 -296 1 1054 8251 65 2 3 chr1 61509659 61510652 -135684780 + L1Md_F2 LINE L1 5589 6580 -2 1 1054 274 408 30 8 chr1 61510707 61510969 -135684463 - ERVL-E-int LTR ERVL -2773 2894 2627 1 1054 271 318 36 36 chr1 61511047 61511158 -135684274 - ERVL-E-int LTR ERVL -3150 2607 2497 1 1054 363 336 73 50 chr1 61511222 61511441 -135683991 - MLT1D LTR MaLR -281 224 1 1 1054 477 361 129 50 chr1 61512002 61512419 -135683013 - ERVL-E-int LTR ERVL -4100 1614 1165 1 1054 237 330 30 30 chr1 61512793 61512893 -135682539 + MER58B DNA MER1_type 241 340 -1 1 1054 350 341 47 18 chr1 61512936 61513106 -135682326 + MER3 DNA MER1_type 15 189 -20 1 1054 406 302 8 38 chr1 61513773 61513904 -135681528 - LTR16C LTR ERVL -9 480 354 1 1054 429 192 0 0 chr1 61514249 61514374 -135681058 + (CA)n Simple_repeat Simple_repeat 2 126 0 1 1054 630 139 0 0 chr1 61514460 61514597 -135680835 + (TC)n Simple_repeat Simple_repeat 1 137 0 1 1054 270 115 0 0 chr1 61514597 61514649 -135680783 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1054 406 366 91 14 chr1 61516445 61516664 -135678768 - B4A SINE B4 -56 236 1 2 1054 210 276 0 33 chr1 61517222 61517282 -135678150 - MIRc SINE MIR -30 238 181 2 1054 398 194 103 79 chr1 61519450 61519591 -135675841 + MLT1A1 LTR MaLR 1 144 -221 2 1054 356 395 31 5 chr1 61520056 61520247 -135675185 + ORR1E LTR MaLR 1 196 -163 2 1054 207 88 0 0 chr1 61520358 61520392 -135675040 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1054 4435 42 2 4 chr1 61520789 61521295 -135674137 - L1Md_F2 LINE L1 -1 6581 6077 2 1054 4249 216 47 62 chr1 61521342 61522378 -135673054 - RMER1B Other Other 0 1066 46 2 1054 800 321 45 59 chr1 61522795 61522829 -135672603 + LTR82A LTR ERVL 4 815 -57 2 1054 671 318 91 92 chr1 61522829 61523566 -135671866 + LTR82B Low_complexity ERVL 38 773 -57 2 1054 22 56 0 0 chr1 61523623 61523659 -135671773 + AT_rich Low_complexity Low_complexity 1 36 0 3 1054 1460 0 0 16 chr1 61524184 61524439 -135670993 + (TTC)n Simple_repeat Simple_repeat 1 250 0 3 1054 965 259 0 35 chr1 61524440 61524640 -135670792 - B3 SINE B2 -16 200 8 3 1054 270 296 174 11 chr1 61525121 61525262 -135670170 - MLT1A1 LTR MaLR -115 495 277 3 1054 210 225 25 12 chr1 61525755 61525836 -135669596 + GA-rich Low_complexity Low_complexity 2 83 0 3 1054 207 69 0 0 chr1 61525883 61525912 -135669520 + (TAA)n Simple_repeat Simple_repeat 1 29 0 3 1054 665 70 0 0 chr1 61525912 61525998 -135669434 + B1_Mus2 SINE Alu 52 137 -10 3 1054 396 59 0 0 chr1 61525998 61526049 -135669383 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1054 367 392 62 16 chr1 61526081 61526325 -135669107 - MIR SINE MIR -4 258 4 3 1054 453 130 0 0 chr1 61526457 61526526 -135668906 - L1VL1 LINE L1 -6300 122 54 3 1054 516 338 127 49 chr1 61526527 61526835 -135668597 - MLT1A1 LTR MaLR -71 337 6 3 1054 513 208 49 10 chr1 61527284 61527386 -135668046 + U6 snRNA snRNA 1 106 -1 4 1054 261 328 80 77 chr1 61527525 61527799 -135667633 + MLT1J LTR MaLR 236 510 -2 4 1054 224 211 17 17 chr1 61528436 61528494 -135666938 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1054 487 285 30 23 chr1 61530516 61530649 -135664783 - ID_B1 SINE B4 -2 222 89 4 1054 36 70 0 0 chr1 61530939 61531010 -135664422 + AT_rich Low_complexity Low_complexity 1 71 0 4 1054 344 239 81 49 chr1 61531042 61531189 -135664243 - L1M5 LINE L1 -805 5341 5183 4 1054 838 197 0 7 chr1 61531189 61531332 -135664100 - B1_Mur2 SINE Alu -7 142 1 4 1054 344 239 85 61 chr1 61531332 61531392 -135664040 - L1M5 LINE L1 -959 5187 5132 4 1054 532 281 7 0 chr1 61531424 61531570 -135663862 - MER2 DNA MER2_type -31 314 168 4 1054 21 0 0 0 chr1 61531629 61531650 -135663782 + AT_rich Low_complexity Low_complexity 1 21 0 4 1054 580 326 56 42 chr1 61531828 61532328 -135663104 + L1ME2 LINE L1 5655 6161 -3 4 1054 254 289 72 0 chr1 61532658 61532755 -135662677 + L1M4 LINE L1 5209 5312 -834 5 1054 318 26 0 0 chr1 61532781 61532820 -135662612 + (TATG)n Simple_repeat Simple_repeat 2 40 0 5 1054 674 287 43 62 chr1 61532858 61533093 -135662339 + L1M4 LINE L1 5374 5608 -556 5 1054 730 252 0 0 chr1 61533093 61533232 -135662200 + B1_Mus1 SINE Alu 1 139 -9 5 1054 657 38 0 0 chr1 61533232 61533312 -135662120 + (GAGAA)n Simple_repeat Simple_repeat 4 83 0 5 1054 674 287 43 62 chr1 61533312 61533446 -135661986 + L1M4 LINE L1 5609 5736 -428 5 1054 760 276 137 81 chr1 61533446 61534203 -135661229 - L1MEc LINE L1 -5117 1283 484 5 1054 303 382 78 13 chr1 61534291 61534522 -135660910 - L1MEc LINE L1 -6047 353 108 5 1054 607 324 45 110 chr1 61534714 61535179 -135660253 + MLT1D LTR MaLR 6 440 -65 5 1054 2088 273 34 36 chr1 61535207 61535813 -135659619 - Lx5 LINE L1 -18 7032 6455 5 1054 1173 232 84 62 chr1 61536240 61536598 -135658834 - ORR1D2 LTR MaLR -4 366 1 5 1054 1334 205 57 111 chr1 61536915 61536977 -135658455 - RLTR11A LTR ERVK -4 524 452 5 1054 243 0 0 0 chr1 61536977 61537004 -135658428 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1054 1334 205 57 111 chr1 61537004 61537381 -135658051 - RLTR11A LTR ERVK -77 451 110 5 1054 185 108 27 0 chr1 61538031 61538068 -135657364 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 6 1054 225 0 0 0 chr1 61538563 61538588 -135656844 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 1054 185 132 26 0 chr1 61538971 61539009 -135656423 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1054 724 265 117 50 chr1 61539211 61539509 -135655923 + MLT1D LTR MaLR 48 365 -140 6 1054 924 36 0 0 chr1 61539655 61539767 -135655665 + (GGAGAA)n Simple_repeat Simple_repeat 4 115 0 6 1054 660 276 20 15 chr1 61540036 61540235 -135655197 - L1M5 LINE L1 -422 5742 5543 6 1054 714 223 118 10 chr1 61540565 61540760 -135654672 - B3 SINE B2 0 216 1 6 1054 283 191 73 0 chr1 61543503 61543571 -135651861 - MER53 DNA hAT -8 185 113 6 1054 226 244 77 0 chr1 61543504 61543582 -135651850 + MER53 DNA hAT 19 102 -91 6 1054 4949 15 0 0 chr1 61543688 61544214 -135651218 + L1Md_A LINE L1 6056 6581 -1 6 1054 360 295 51 76 chr1 61544296 61544454 -135650978 + MIR SINE MIR 104 257 -5 7 1054 549 322 64 80 chr1 61545542 61545903 -135649529 - ORR1E LTR MaLR -4 355 1 7 1054 293 236 14 0 chr1 61546067 61546139 -135649293 - MLT1G1 LTR MaLR -2 577 505 7 1054 392 303 52 72 chr1 61546460 61546613 -135648819 + RSINE1 SINE B4 13 162 -3 7 1054 600 53 0 0 chr1 61546742 61546818 -135648614 + (TC)n Simple_repeat Simple_repeat 2 77 0 7 1054 306 67 0 0 chr1 61547119 61547164 -135648268 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 7 1054 303 28 0 0 chr1 61547164 61547199 -135648233 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1054 1906 193 37 11 chr1 61547307 61547689 -135647743 - RMER19C LTR ERVK 0 611 220 7 1054 987 249 35 46 chr1 61547705 61547849 -135647583 - RMER19C LTR ERVK -332 279 140 7 1054 2764 134 60 24 chr1 61547849 61548314 -135647118 + RLTR45 LTR ERVK 1 482 0 7 1054 987 249 35 46 chr1 61548314 61548451 -135646981 - RMER19C LTR ERVK -472 139 1 7 1054 249 33 0 0 chr1 61548500 61548530 -135646902 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1054 38698 31 2 0 chr1 61548630 61555738 -135639694 - L1Md_T LINE L1 0 6585 1 8 1054 24146 155 18 38 chr1 61555757 61561849 -135633583 - Lx2B LINE L1 -2 6998 1036 8 1054 502 310 150 0 chr1 61561877 61562077 -135633355 + MLT1D LTR MaLR 273 502 -3 8 1054 653 217 76 42 chr1 61562422 61562566 -135632866 - B1_Mur3 SINE Alu 0 149 1 8 1054 408 20 0 0 chr1 61562882 61562931 -135632501 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1054 1318 48 0 0 chr1 61562972 61563119 -135632313 + B1_Mm SINE Alu 1 147 0 8 1054 745 338 35 42 chr1 61563235 61563519 -135631913 - MTE2a LTR MaLR -41 338 57 8 1054 297 0 0 0 chr1 61563594 61563627 -135631805 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1054 1778 28 5 14 chr1 61563879 61564097 -135631335 + L1Md_F2 LINE L1 6367 6582 0 8 1054 1084 269 133 9 chr1 61564302 61564632 -135630800 - MTD LTR MaLR -36 383 13 9 1054 745 290 74 27 chr1 61565112 61565519 -135629913 + L1M5 LINE L1 4358 4783 -1363 9 1054 535 249 137 9 chr1 61566003 61566222 -135629210 + L1MA8 LINE L1 6045 6291 0 9 1054 283 337 92 11 chr1 61566393 61566567 -135628865 + MER45B DNA Tip100 53 240 -800 9 1054 426 309 0 0 chr1 61566812 61566922 -135628510 + MER45B DNA Tip100 647 756 -284 9 1054 320 279 0 0 chr1 61566938 61567006 -135628426 + L1M4c LINE L1 993 1060 -5844 9 1054 382 279 166 27 chr1 61567044 61567353 -135628079 + L1M4c LINE L1 1819 2182 -5152 9 1054 7311 170 40 9 chr1 61567410 61567447 -135627985 - Lx9 LINE L1 -1 7643 7595 9 1054 606 63 0 0 chr1 61567447 61567526 -135627906 + (TCCCC)n Simple_repeat Simple_repeat 5 83 0 9 1054 7311 170 40 9 chr1 61567526 61568753 -135626679 - Lx9 LINE L1 -50 7594 6339 9 1054 705 267 42 0 chr1 61568821 61568986 -135626446 - B3 SINE B2 -6 210 39 9 1054 1194 68 7 0 chr1 61569024 61569170 -135626262 + B1_Mus2 SINE Alu 1 147 0 9 1054 228 35 0 0 chr1 61569193 61569222 -135626210 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1054 2187 191 63 68 chr1 61569414 61570000 -135625432 - Lx5 LINE L1 -493 6557 5975 1 1054 864 269 65 9 chr1 61570044 61570282 -135625150 + Lx5 LINE L1 6760 7042 -16 1 1054 213 39 0 0 chr1 61570284 61570310 -135625122 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1 1054 1389 276 93 48 chr1 61570310 61571341 -135624091 + L1M4c LINE L1 2787 3866 -3140 9 1054 1231 81 0 0 chr1 61571429 61571577 -135623855 + B1_Mus1 SINE Alu 1 148 0 1 1054 615 284 47 6 chr1 61571604 61571774 -135623658 - B3A SINE B2 -19 179 3 1 1054 188 299 14 56 chr1 61572128 61572199 -135623233 - L2c LINE L2 -43 3344 3277 1 1054 2201 157 29 21 chr1 61572521 61572904 -135622528 + ORR1B1 LTR MaLR 1 386 -8 1 1054 324 0 0 0 chr1 61573122 61573158 -135622274 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1054 342 0 0 0 chr1 61573287 61573325 -135622107 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1054 923 260 20 0 chr1 61573450 61573654 -135621778 - B3 SINE B2 -1 215 8 1 1054 180 0 0 0 chr1 61573698 61573718 -135621714 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1054 2564 155 21 19 chr1 61573718 61574127 -135621305 + MTC LTR MaLR 14 420 -1 1 1054 1251 180 9 13 chr1 61574347 61574572 -135620860 + URR1A DNA MER1_type 1 224 -2 1 1054 378 238 128 149 chr1 61575910 61576191 -135619241 + ORR1E LTR MaLR 53 327 -32 1 1054 202 286 0 18 chr1 61576221 61576278 -135619154 + MIR SINE MIR 76 131 -131 1 1054 516 321 0 0 chr1 61576355 61576495 -135618937 - RSINE1 SINE B4 -18 147 8 1 1054 286 350 47 31 chr1 61577117 61577244 -135618188 + MLT1J LTR MaLR 180 308 -204 1 1054 684 247 103 43 chr1 61577310 61577610 -135617822 + Charlie1a DNA MER1_type 1037 1354 -101 1 1054 1046 191 71 5 chr1 61579111 61579322 -135616110 + MTD LTR MaLR 165 389 -30 1 1054 210 147 0 0 chr1 61579325 61579359 -135616073 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 1 1054 513 0 0 0 chr1 61579455 61579512 -135615920 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1054 740 21 21 0 chr1 61579639 61579732 -135615700 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 1054 3322 31 23 3 chr1 61580174 61580560 -135614872 - L1Md_F3 LINE L1 0 6584 6191 1 1054 27 29 0 0 chr1 61580626 61580660 -135614772 + AT_rich Low_complexity Low_complexity 1 34 0 1 1054 246 32 0 0 chr1 61582068 61582099 -135613333 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1054 656 292 93 27 chr1 61582115 61582372 -135613060 - B4A SINE B4 -18 274 1 1 1054 198 0 0 0 chr1 61582708 61582730 -135612702 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1 1054 207 0 0 0 chr1 61584544 61584567 -135610865 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1054 905 197 0 33 chr1 61584844 61584996 -135610436 + B1_Mur2 SINE Alu 1 147 -2 1 1054 415 191 52 43 chr1 61585030 61585145 -135610287 + RSINE1 SINE B4 11 126 -39 1 1054 387 0 0 0 chr1 61585147 61585190 -135610242 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 1054 216 0 0 0 chr1 61585197 61585221 -135610211 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1054 458 340 90 24 chr1 61586369 61586580 -135608852 - AmnSINE1 SINE SINE -27 548 324 1 1054 225 238 56 56 chr1 61587989 61588078 -135607354 + MER66B LTR ERV1 114 202 -284 1 1054 368 380 29 24 chr1 61589572 61589777 -135605655 + MIR SINE MIR 46 251 -11 1 1054 792 40 0 0 chr1 61589943 61590043 -135605389 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1054 418 304 65 60 chr1 61590049 61590217 -135605215 + MER20 DNA MER1_type 51 219 0 1 1054 216 0 0 0 chr1 61590487 61590511 -135604921 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1054 454 274 88 7 chr1 61590611 61590758 -135604674 + RMER30 DNA MER1_type 38 196 -6 1 1054 573 9 0 78 chr1 61590778 61590893 -135604539 + (TCTCC)n Simple_repeat Simple_repeat 1 106 0 1 1054 341 22 0 21 chr1 61591783 61591830 -135603602 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1054 1906 215 70 5 chr1 61591907 61592277 -135603155 - ORR1B1 LTR MaLR 0 394 1 1 1054 297 250 0 0 chr1 61593859 61593935 -135601497 - URR1B DNA MER1_type -39 186 111 1 1054 860 115 8 2 chr1 61595085 61595229 -135600203 + ORR1B1 LTR MaLR 1 133 -261 1 1054 480 290 79 104 chr1 61595229 61595775 -135599657 + Lx8 LINE L1 5737 6268 -1205 1 1054 1051 238 34 0 chr1 61595779 61595985 -135599447 + B3 SINE B2 4 216 0 1 1054 677 239 65 7 chr1 61596222 61596361 -135599071 - B1_Mus2 SINE Alu 0 147 1 1 1054 1190 155 130 0 chr1 61597019 61597219 -135598213 - URR1A DNA MER1_type 0 226 1 1 1054 707 298 10 25 chr1 61598270 61598449 -135596983 - ID_B1 SINE B4 -63 229 58 1 1054 396 0 0 0 chr1 61598493 61598537 -135596895 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1054 846 116 0 0 chr1 61598537 61598665 -135596767 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 1054 182 33 67 0 chr1 61598979 61599009 -135596423 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1054 30 0 0 0 chr1 61601146 61601176 -135594256 + AT_rich Low_complexity Low_complexity 1 30 0 1 1054 494 231 8 0 chr1 61602326 61602577 -135592855 + (CA)n Simple_repeat Simple_repeat 1 253 0 1 1054 1518 130 9 5 chr1 61602779 61603003 -135592429 + URR1B DNA MER1_type 1 225 0 1 1054 824 204 0 7 chr1 61603133 61603276 -135592156 + B1_Mur2 SINE Alu 1 142 -7 1 1054 189 74 0 0 chr1 61603278 61603305 -135592127 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1054 296 322 40 53 chr1 61603305 61603456 -135591976 + MIR SINE MIR 88 236 -26 1 131 3839 151 80 39 chr1 61603561 61604326 -135591106 + RMER19B LTR ERVK 1 796 -106 1 1055 348 227 17 6 chr1 61604424 61604533 -135590899 + L1MA4 LINE L1 5369 5483 -961 1 1055 372 354 8 0 chr1 61604532 61604662 -135590770 + L1MA4 LINE L1 5634 5764 -527 1 1055 541 262 91 40 chr1 61604662 61604837 -135590595 + B4A SINE B4 2 185 -107 1 1055 233 135 0 19 chr1 61604846 61604899 -135590533 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1055 396 0 0 0 chr1 61604899 61604943 -135590489 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1055 377 261 18 43 chr1 61604948 61605111 -135590321 + L1MA4 LINE L1 5787 5944 -356 1 1055 891 325 44 19 chr1 61605328 61605764 -135589668 + L1MA4 LINE L1 5508 5953 -203 1 1055 324 0 0 0 chr1 61605764 61605800 -135589632 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1055 432 0 0 0 chr1 61605800 61605847 -135589585 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1055 660 341 67 24 chr1 61605847 61605902 -135589530 + L1MA4 LINE L1 5954 6020 -136 1 1055 354 313 96 0 chr1 61606513 61606628 -135588804 + RSINE1 SINE B4 11 136 -29 1 1055 667 271 11 42 chr1 61606826 61606860 -135588572 - B3A SINE B2 -14 184 155 1 1055 466 259 83 35 chr1 61606860 61607004 -135588428 - RSINE1 SINE B4 -11 154 4 1 1055 667 271 11 42 chr1 61607004 61607158 -135588274 - B3A SINE B2 -44 154 2 1 1055 273 310 119 31 chr1 61607362 61607522 -135587910 + MIR SINE MIR 59 232 -30 1 1055 21 36 0 0 chr1 61608277 61608305 -135587127 + AT_rich Low_complexity Low_complexity 1 28 0 1 1055 291 234 0 0 chr1 61608600 61608677 -135586755 + CT-rich Low_complexity Low_complexity 3 79 0 1 1055 274 322 52 9 chr1 61608862 61608978 -135586454 - L3 LINE CR1 -301 4188 4068 1 1055 21 0 0 0 chr1 61610024 61610045 -135585387 + AT_rich Low_complexity Low_complexity 1 21 0 1 1055 787 147 99 35 chr1 61610382 61610523 -135584909 - B1_Mur4 SINE Alu 0 150 1 1 1055 279 307 0 11 chr1 61610652 61610741 -135584691 - Lx8 LINE L1 -4 7469 7382 1 1055 1340 251 95 24 chr1 61610750 61611129 -135584303 - Lx8 LINE L1 -45 7428 7023 1 1055 1236 262 77 36 chr1 61611354 61611833 -135583599 + L1MB4 LINE L1 5668 6166 -14 1 1055 589 322 28 28 chr1 61611855 61612037 -135583395 + B3A SINE B2 1 182 -16 1 1055 251 322 40 40 chr1 61612285 61612411 -135583021 + MER5B DNA MER1_type 5 130 -48 1 1055 935 215 54 71 chr1 61612682 61612955 -135582477 + B4 SINE B4 1 269 -23 1 1055 188 111 28 0 chr1 61612955 61612991 -135582441 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1055 935 215 54 71 chr1 61612991 61613012 -135582420 + B4 SINE B4 270 290 -2 1 1055 711 221 7 14 chr1 61614006 61614144 -135581288 + B1_Mur3 SINE Alu 3 139 -10 1 1055 189 74 0 0 chr1 61614144 61614171 -135581261 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1055 319 273 68 83 chr1 61615161 61615293 -135580139 + MER91B DNA Tip100 1 130 -60 1 1055 209 340 39 29 chr1 61615307 61615410 -135580022 + MER91B DNA Tip100 87 190 0 1 1055 272 271 0 0 chr1 61615746 61615805 -135579627 + B4A SINE B4 11 69 -223 1 1055 17286 33 3 16 chr1 61615827 61618699 -135576733 + L1Md_T LINE L1 409 3238 -2645 1 1055 467 20 0 0 chr1 61618697 61618748 -135576684 + L1Md_T LINE L1 5536 5586 -297 1 1055 8912 39 0 0 chr1 61618748 61619744 -135575688 + L1Md_T LINE L1 5587 6582 0 1 1055 1087 54 39 0 chr1 61619796 61619926 -135575506 + B1_Mus1 SINE Alu 1 135 -13 1 1055 21 0 0 0 chr1 61619983 61620004 -135575428 + AT_rich Low_complexity Low_complexity 1 21 0 1 1055 673 281 40 20 chr1 61620011 61620211 -135575221 + B4A SINE B4 87 290 -2 1 1055 574 295 51 17 chr1 61621477 61621653 -135573779 - MER5A DNA MER1_type -6 183 2 1 1055 6872 57 1 0 chr1 61621659 61622501 -135572931 + L1_Mus1 LINE L1 5725 6567 0 1 1055 597 299 46 46 chr1 61622529 61622767 -135572665 + MIRb SINE MIR 31 268 0 1 1055 255 152 0 0 chr1 61622812 61622858 -135572574 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1055 221 0 35 0 chr1 61622941 61622970 -135572462 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1055 251 324 28 38 chr1 61624350 61624456 -135570976 + LTR16B LTR ERVL 89 193 -269 1 1055 312 316 112 6 chr1 61624484 61624662 -135570770 + LTR16B LTR ERVL 267 463 0 1 1055 297 0 0 0 chr1 61626145 61626178 -135569254 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1055 276 30 0 0 chr1 61626533 61626566 -135568866 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1055 441 0 0 0 chr1 61626566 61626614 -135568818 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1055 186 43 0 0 chr1 61626617 61626640 -135568792 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1055 301 214 24 22 chr1 61626733 61626824 -135568608 + L2a LINE L2 3287 3426 0 1 1055 453 342 18 13 chr1 61627596 61627824 -135567608 + L1MC2 LINE L1 6034 6262 -82 2 1055 318 209 15 15 chr1 61628052 61628120 -135567312 - PB1D10 SINE Alu 0 117 50 2 1055 588 273 45 8 chr1 61628177 61628310 -135567122 + RSINE1 SINE B4 4 141 -24 2 1055 387 0 0 0 chr1 61628333 61628376 -135567056 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1055 230 180 16 0 chr1 61628433 61628494 -135566938 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1055 21 0 0 0 chr1 61628506 61628527 -135566905 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 17812 10 3 2 chr1 61628883 61633866 -135561566 - L1Md_A LINE L1 0 6582 1 2 1055 215 316 0 26 chr1 61633949 61634027 -135561405 + L4 LINE RTE 1785 1860 -169 2 1055 280 294 28 7 chr1 61634682 61634826 -135560606 + L1M5 LINE L1 5299 5445 -749 2 1055 223 298 98 14 chr1 61635687 61635830 -135559602 - L3 LINE CR1 -324 4165 4011 2 1055 627 277 72 47 chr1 61636169 61636435 -135558997 - MLT1F LTR MaLR -3 546 266 2 1055 411 318 63 53 chr1 61636673 61636862 -135558570 + MIRb SINE MIR 46 236 -32 2 1055 7987 95 13 4 chr1 61636868 61638538 -135556894 - L1_Mus4 LINE L1 0 6636 4953 2 1055 23 0 0 0 chr1 61638759 61638782 -135556650 + AT_rich Low_complexity Low_complexity 1 23 0 2 1055 195 307 5 0 chr1 61639170 61639246 -135556186 - MIRm SINE MIR -76 186 110 2 1055 517 369 126 20 chr1 61640718 61640964 -135554468 - B4A SINE B4 0 292 21 2 1055 480 35 0 0 chr1 61641132 61641190 -135554242 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1055 35 0 0 0 chr1 61642307 61642342 -135553090 + AT_rich Low_complexity Low_complexity 1 35 0 2 1055 21 0 0 0 chr1 61643070 61643091 -135552341 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 1010 249 95 33 chr1 61643113 61643387 -135552045 + B4A SINE B4 2 292 0 2 1055 347 297 13 80 chr1 61643594 61643693 -135551739 - MER58B DNA MER1_type -40 301 213 2 1055 3016 139 9 0 chr1 61643693 61644154 -135551278 + RLTR20D LTR ERVK 1 464 -104 2 1055 423 0 0 0 chr1 61644154 61644201 -135551231 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1055 409 261 49 81 chr1 61644201 61644247 -135551185 + RLTR20D LTR ERVK 396 458 -93 2 1055 228 111 0 0 chr1 61644528 61644564 -135550868 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 2 1055 22 0 0 0 chr1 61644791 61644813 -135550619 + AT_rich Low_complexity Low_complexity 1 22 0 2 1055 567 0 0 0 chr1 61645316 61645379 -135550053 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1055 200 149 21 0 chr1 61645380 61645427 -135550005 + (CAGG)n Simple_repeat Simple_repeat 4 51 0 2 1055 1747 214 36 66 chr1 61645496 61645907 -135549525 + RLTR18B LTR ERVK 112 510 -2 2 1055 789 73 0 0 chr1 61645915 61646024 -135549408 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1055 1198 259 30 11 chr1 61646026 61646288 -135549144 - B4 SINE B4 -23 269 3 2 1055 245 338 122 42 chr1 61646426 61646639 -135548793 + MIR SINE MIR 14 243 -19 2 1055 315 263 215 61 chr1 61647328 61647575 -135547857 - B4A SINE B4 -7 285 1 2 1055 1156 68 0 0 chr1 61648789 61648936 -135546496 - L1Md_A LINE L1 -6 6576 6430 2 1055 21693 72 6 8 chr1 61648936 61651850 -135543582 - L1Md_A LINE L1 -1772 4111 1203 2 1055 3886 191 17 11 chr1 61651858 61652682 -135542750 - L1Md_A LINE L1 -5470 1254 446 2 1055 1198 75 0 0 chr1 61652682 61652829 -135542603 - B1_Mus2 SINE Alu 0 147 1 2 1055 393 102 0 0 chr1 61653596 61653655 -135541777 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1055 422 331 29 41 chr1 61653678 61653848 -135541584 - B4 SINE B4 -118 174 7 2 1055 479 240 101 0 chr1 61654113 61654242 -135541190 - LTR33 LTR ERVL 0 515 374 2 1055 492 319 99 50 chr1 61655111 61655332 -135540100 + MIRb SINE MIR 2 233 -35 2 1055 354 251 40 20 chr1 61655746 61655896 -135539536 + MIRc SINE MIR 60 208 0 2 1055 396 0 0 0 chr1 61655899 61655943 -135539489 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1055 225 328 68 8 chr1 61656236 61656353 -135539079 + LTR33 LTR ERVL 392 515 0 2 1055 221 57 0 28 chr1 61657009 61657045 -135538387 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1055 746 306 46 10 chr1 61657119 61657314 -135538118 + B4 SINE B4 9 210 -82 2 1055 285 281 11 22 chr1 61657330 61657421 -135538011 - Lx8 LINE L1 -1037 6436 6347 2 1055 1724 292 46 94 chr1 61657421 61658157 -135537275 + Lx8 LINE L1 6417 7117 -356 2 1055 521 248 40 62 chr1 61658903 61659308 -135536124 - RMER17C LTR ERVK -416 473 84 2 1055 732 328 24 22 chr1 61659382 61659689 -135535743 - MLT2B2 LTR ERVL -167 353 56 2 1055 271 286 52 0 chr1 61659714 61659791 -135535641 - ID2 SINE ID -2 81 1 2 1055 1765 187 38 62 chr1 61659796 61660314 -135535118 + RMER20B LTR ERVK 10 596 -293 2 1055 376 150 33 0 chr1 61660315 61660435 -135534997 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 2 1055 1218 195 0 89 chr1 61660453 61660712 -135534720 + RMER20B LTR ERVK 390 625 -2 2 1055 336 317 129 0 chr1 61660714 61660815 -135534617 - PB1 SINE Alu -13 114 1 2 1055 2093 49 0 4 chr1 61661118 61661383 -135534049 - L1Md_F2 LINE L1 -603 5979 5716 2 1055 5030 60 5 2 chr1 61661383 61661984 -135533448 + L1Md_F2 LINE L1 5978 6580 -2 2 1055 2696 124 9 76 chr1 61662193 61662654 -135532778 + RLTR23 LTR ERV1 1 430 0 2 1055 312 221 13 0 chr1 61663289 61663366 -135532066 - PB1D7 SINE Alu 0 120 43 2 1055 1075 212 23 72 chr1 61663735 61663999 -135531433 - RLTR11A2 LTR ERVK -276 251 1 2 1055 201 74 0 0 chr1 61664855 61664882 -135530550 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2 1055 239 121 0 0 chr1 61664882 61664915 -135530517 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 2 1055 843 197 0 0 chr1 61664916 61665094 -135530338 + GA-rich Low_complexity Low_complexity 1 178 0 2 1055 365 309 79 0 chr1 61665291 61665417 -135530015 + MLT1D LTR MaLR 31 166 -339 2 1055 459 289 52 13 chr1 61665565 61665708 -135529724 - B1F SINE Alu -1 146 1 2 1055 233 280 62 31 chr1 61666118 61666247 -135529185 + L1M5 LINE L1 5770 5902 -222 2 1055 225 416 86 11 chr1 61666432 61666607 -135528825 + LTR33 LTR ERVL 1 188 -332 2 1055 361 312 125 13 chr1 61666662 61666886 -135528546 + LTR33 LTR ERVL 265 513 -2 2 1055 325 309 21 8 chr1 61667948 61668081 -135527351 - MIR SINE MIR -110 158 21 2 1055 270 339 68 21 chr1 61668135 61668325 -135527107 - MamRep605 Unknown Unknown -325 551 353 2 1055 25 31 0 0 chr1 61668800 61668832 -135526600 + AT_rich Low_complexity Low_complexity 1 32 0 2 1055 301 171 86 0 chr1 61669597 61669661 -135525771 - ORR1D1 LTR MaLR -4 370 301 2 1055 850 186 12 23 chr1 61669661 61669832 -135525600 + B2_Mm2 SINE B2 1 169 -26 2 1055 990 196 192 4 chr1 61669839 61670105 -135525327 - ORR1D1 LTR MaLR -58 316 1 2 1055 2424 164 68 16 chr1 61670661 61671162 -135524270 - RLTR11A2 LTR ERVK 0 527 1 2 1055 265 226 101 56 chr1 61671389 61671478 -135523954 + LTR33 LTR ERVL 418 510 -5 2 1055 1534 213 173 35 chr1 61671928 61672516 -135522916 + RMER1B Other Other 18 555 -511 2 1055 3004 215 91 57 chr1 61672520 61673432 -135522000 + RMER1B Other Other 195 1049 -17 2 1055 189 0 0 0 chr1 61673786 61673807 -135521625 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1055 1404 134 13 22 chr1 61674347 61674575 -135520857 + URR1A DNA MER1_type 1 226 0 2 1055 661 268 44 6 chr1 61674766 61674924 -135520508 - RSINE1 SINE B4 0 165 2 2 1055 791 167 0 13 chr1 61675720 61675878 -135519554 + CT-rich Low_complexity Low_complexity 2 157 0 2 1055 297 249 108 85 chr1 61677894 61678070 -135517362 + MIR3 SINE MIR 22 201 -7 2 1055 373 262 0 12 chr1 61678314 61678399 -135517033 + ID_B1 SINE B4 82 165 -59 2 1055 279 278 35 69 chr1 61678399 61678430 -135517002 + PB1D10 SINE Alu 1 112 -5 2 1055 1524 276 92 11 chr1 61679361 61679904 -135515528 + L1M2 LINE L1 3414 4000 -2143 2 1055 3095 157 38 4 chr1 61679909 61680369 -135515063 + RLTR20D LTR ERVK 1 465 -103 2 1055 225 0 0 0 chr1 61680369 61680394 -135515038 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1055 3095 157 38 4 chr1 61680394 61680482 -135514950 + RLTR20D LTR ERVK 466 567 -1 2 1055 541 274 62 0 chr1 61680511 61680657 -135514775 + L1M2 LINE L1 4029 4183 -1960 2 1055 1172 219 144 9 chr1 61680662 61681008 -135514424 + MTD LTR MaLR 1 393 -26 2 1055 1165 272 206 66 chr1 61681014 61682354 -135513078 + L1M2 LINE L1 4183 5728 -440 2 1055 308 302 109 41 chr1 61682756 61682977 -135512455 - RMER20B LTR ERVK -271 356 121 2 1055 26 0 0 0 chr1 61685465 61685491 -135509941 + GC_rich Low_complexity Low_complexity 1 26 0 2 1055 420 291 108 0 chr1 61687035 61687183 -135508249 - RSINE1 SINE B4 0 165 2 2 1055 279 202 202 0 chr1 61687304 61687383 -135508049 + B3A SINE B2 1 95 -103 2 1055 333 311 0 43 chr1 61689993 61690134 -135505298 + Charlie8 DNA MER1_type 94 228 -2200 2 1055 490 297 0 0 chr1 61690290 61690401 -135505031 - RSINE1 SINE B4 0 165 55 2 1055 411 68 0 0 chr1 61690576 61690635 -135504797 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1055 216 0 0 0 chr1 61690735 61690759 -135504673 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1055 1069 71 0 23 chr1 61690759 61690975 -135504457 + (GA)n Simple_repeat Simple_repeat 1 211 0 2 1055 216 277 143 0 chr1 61691675 61691794 -135503638 + L2a LINE L2 2175 2310 -1109 2 1055 244 362 31 83 chr1 61691812 61692101 -135503331 + L2a LINE L2 2397 2670 -749 2 1055 183 139 0 0 chr1 61692145 61692181 -135503251 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 2 1055 445 305 16 0 chr1 61692284 61692412 -135503020 - B4 SINE B4 -160 132 3 2 1055 894 291 158 38 chr1 61692579 61693079 -135502353 + MER68 LTR ERVL 4 563 0 2 1055 204 314 99 33 chr1 61693330 61693364 -135502068 + L2a LINE L2 3190 3224 -202 2 1055 286 23 47 0 chr1 61693364 61693407 -135502025 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1055 204 314 99 33 chr1 61693407 61693583 -135501849 + L2a LINE L2 3225 3413 -13 2 1055 229 271 71 0 chr1 61694005 61694090 -135501342 - MLT1F2 LTR MaLR -425 135 45 2 1055 1124 236 28 79 chr1 61694503 61694907 -135500525 + MTE2a LTR MaLR 24 405 -14 2 1055 215 330 61 20 chr1 61696127 61696226 -135499206 + MIRm SINE MIR 161 263 -13 2 1055 180 77 0 0 chr1 61696549 61696575 -135498857 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1055 423 273 15 118 chr1 61696716 61696911 -135498521 - LTR84b LTR ERVL 0 761 587 2 1055 528 150 19 39 chr1 61697710 61697814 -135497618 - PB1D7 SINE Alu -1 119 18 3 1055 347 331 225 18 chr1 61698590 61698983 -135496449 + LTR33 LTR ERVL 38 511 -4 3 1055 180 0 0 0 chr1 61699101 61699121 -135496311 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1055 339 288 63 16 chr1 61700003 61700130 -135495302 - Charlie1a DNA MER1_type -313 1142 1010 3 1055 255 334 98 75 chr1 61700201 61700492 -135494940 - MLT1E3 LTR MaLR -88 592 284 3 1055 241 311 60 20 chr1 61700552 61700703 -135494729 - Charlie1a DNA MER1_type -497 958 802 3 1055 528 346 40 35 chr1 61700949 61701437 -135493995 - L1M2 LINE L1 -3928 2621 2138 3 1055 223 296 41 50 chr1 61706383 61706504 -135488928 - MIRb SINE MIR -50 218 99 3 1055 1103 85 0 0 chr1 61707633 61707774 -135487658 + B1_Mus1 SINE Alu 1 141 -7 3 1055 462 271 27 14 chr1 61708271 61708417 -135487015 + B1_Mur2 SINE Alu 1 148 -1 3 1055 396 103 0 0 chr1 61708786 61708844 -135486588 + (T)n Simple_repeat Simple_repeat 1 58 0 3 1055 198 0 0 0 chr1 61709402 61709424 -135486008 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1055 441 0 0 0 chr1 61709623 61709672 -135485760 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 1055 192 40 0 0 chr1 61710133 61710158 -135485274 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1055 288 0 0 0 chr1 61710206 61710238 -135485194 + (CCCCAG)n Simple_repeat Simple_repeat 6 37 0 3 1055 288 284 84 25 chr1 61710360 61710479 -135484953 + MER20 DNA MER1_type 22 147 -72 3 1055 25 0 0 0 chr1 61713476 61713501 -135481931 + AT_rich Low_complexity Low_complexity 1 25 0 3 1055 255 130 0 0 chr1 61714907 61714961 -135480471 + (T)n Simple_repeat Simple_repeat 1 54 0 3 1055 339 283 15 30 chr1 61715436 61715567 -135479865 - Charlie1 DNA MER1_type -2453 328 200 3 1055 749 103 0 8 chr1 61715632 61715750 -135479682 + (TCTCCC)n Simple_repeat Simple_repeat 4 120 0 3 1055 303 312 20 51 chr1 61716217 61716315 -135479117 - LTR33A LTR ERVL -301 219 125 3 1055 563 261 169 22 chr1 61716484 61716802 -135478630 - MLT1A1 LTR MaLR -15 393 27 3 1055 11951 8 1 1 chr1 61717311 61718649 -135476783 + L1Md_A LINE L1 7 1344 -5380 3 1055 13360 3 0 0 chr1 61721332 61722891 -135472541 + L1Md_A LINE L1 4028 5586 -297 3 1055 9048 3 0 0 chr1 61722891 61723887 -135471545 + L1Md_A LINE L1 5587 6582 0 3 1055 1051 199 14 19 chr1 61724420 61724635 -135470797 + B3 SINE B2 2 215 -1 3 1055 22 56 0 0 chr1 61724772 61724808 -135470624 + AT_rich Low_complexity Low_complexity 1 36 0 3 1055 263 72 0 23 chr1 61725047 61725090 -135470342 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1055 4200 166 51 53 chr1 61726376 61727260 -135468172 - RMER17B LTR ERVK -76 882 1 3 1055 1397 76 11 0 chr1 61728103 61728287 -135467145 - B2_Mm1t SINE B2 -7 186 1 3 1055 303 122 0 0 chr1 61729115 61729164 -135466268 + (TCCCC)n Simple_repeat Simple_repeat 2 50 0 3 1055 361 292 145 8 chr1 61730868 61730999 -135464433 - MLT1A0 LTR MaLR -216 149 1 3 1055 226 254 74 63 chr1 61732913 61733102 -135462330 + L1MA6 LINE L1 6109 6299 -1 3 1055 201 235 165 48 chr1 61733598 61733701 -135461731 - MIRb SINE MIR -83 185 71 3 1055 203 133 0 0 chr1 61734856 61734886 -135460546 + (TCC)n Simple_repeat Simple_repeat 1 30 0 3 1056 463 303 79 0 chr1 61735618 61735783 -135459649 - B3A SINE B2 -16 182 5 3 1056 282 358 42 42 chr1 61737388 61737531 -135457901 + MIR SINE MIR 104 246 -22 3 1056 190 211 0 136 chr1 61739616 61739682 -135455750 + MIRb SINE MIR 26 82 -186 3 1056 1669 214 39 11 chr1 61739927 61740126 -135455306 - ORR1D1 LTR MaLR 0 374 177 3 1056 651 46 0 0 chr1 61740126 61740213 -135455219 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1056 1669 214 39 11 chr1 61740213 61740377 -135455055 - ORR1D1 LTR MaLR -198 176 3 3 1056 432 0 0 0 chr1 61740869 61740917 -135454515 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 3 1056 977 72 64 14 chr1 61740953 61741093 -135454339 - B1_Mus1 SINE Alu -1 147 1 3 1056 22 0 0 0 chr1 61742508 61742530 -135452902 + AT_rich Low_complexity Low_complexity 1 22 0 3 1056 679 386 127 20 chr1 61743443 61743940 -135451492 - MLT1H1 LTR MaLR -3 552 3 3 1056 1157 194 380 15 chr1 61744240 61744514 -135450918 + ORR1D1 LTR MaLR 1 374 0 3 1056 265 327 114 13 chr1 61744518 61744676 -135450756 + MIRb SINE MIR 31 204 -64 3 1056 336 366 89 31 chr1 61745256 61745515 -135449917 - MLT1I LTR MaLR -137 274 1 3 1056 2031 148 43 6 chr1 61746222 61746568 -135448864 + ORR1B2 LTR MaLR 1 359 -8 3 1056 241 186 14 14 chr1 61746713 61746784 -135448648 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 3 1056 285 272 142 16 chr1 61746821 61746948 -135448484 - RSINE1 SINE B4 -19 146 4 3 1056 784 335 74 0 chr1 61748014 61748324 -135447108 - MER2 DNA MER2_type -6 339 7 3 1056 243 186 237 0 chr1 61748531 61748590 -135446842 - Lx8 LINE L1 -521 6952 6880 3 1056 1993 183 53 0 chr1 61748723 61749084 -135446348 - MTD LTR MaLR -9 410 31 3 1056 462 36 0 0 chr1 61749116 61749172 -135446260 + (CAG)n Simple_repeat Simple_repeat 1 56 0 3 1056 348 127 0 0 chr1 61750924 61750979 -135444453 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1056 237 108 0 0 chr1 61750979 61751016 -135444416 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1056 420 317 118 25 chr1 61751234 61751548 -135443884 - HAL1 LINE L1 -105 2402 2060 3 1056 890 316 83 36 chr1 61752424 61752952 -135442480 - Charlie1a DNA MER1_type -319 1136 584 3 1056 203 175 0 0 chr1 61752952 61752992 -135442440 + T-rich Low_complexity Low_complexity 1 40 0 3 1056 1077 38 0 0 chr1 61752994 61753126 -135442306 - B1_Mus2 SINE Alu 0 147 16 3 1056 912 318 16 8 chr1 61753212 61753466 -135441966 + B4A SINE B4 33 288 -4 3 1056 481 338 103 5 chr1 61753573 61753971 -135441461 + L1MC1 LINE L1 5848 6284 -49 3 1056 24 53 0 0 chr1 61753982 61754020 -135441412 + AT_rich Low_complexity Low_complexity 1 38 0 3 1056 517 125 18 46 chr1 61754715 61754824 -135440608 - Lx4B LINE L1 -8 7050 6945 3 1056 561 147 0 0 chr1 61755119 61755214 -135440218 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 3 1056 495 283 151 31 chr1 61755279 61755538 -135439894 - B4A SINE B4 0 292 3 3 1056 3364 220 42 34 chr1 61755600 61756134 -135439298 + Lx7 LINE L1 6805 7353 -343 3 1056 344 22 22 0 chr1 61756134 61756179 -135439253 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1056 3364 220 42 34 chr1 61756179 61756529 -135438903 + Lx7 LINE L1 7354 7696 0 3 1056 1862 29 24 48 chr1 61757613 61757864 -135437568 + L1_Mus1 LINE L1 6323 6567 0 3 1056 380 271 116 12 chr1 61757968 61758286 -135437146 - L1MA10 LINE L1 -13 6321 5959 3 1056 623 238 23 45 chr1 61759846 61759978 -135435454 + RSINE1 SINE B4 4 132 -33 3 1056 336 395 43 55 chr1 61760086 61760434 -135434998 - MLT1I LTR MaLR -55 356 13 3 1056 2184 158 83 29 chr1 61761593 61762107 -135433325 - RMER4B LTR ERVK 0 585 18 3 1056 592 255 140 23 chr1 61762224 61762481 -135432951 + L1M3 LINE L1 5425 5711 -478 3 1056 628 288 72 20 chr1 61762672 61763050 -135432382 - MERVL_2A-int LTR ERVL -5035 722 306 3 1056 290 290 54 39 chr1 61763157 61763286 -135432146 - MT2A LTR ERVL -214 319 189 3 1056 1388 68 155 0 chr1 61763723 61763930 -135431502 + L1_Mus1 LINE L1 6328 6566 -1 3 1056 585 324 87 45 chr1 61764885 61765195 -135430237 - MER2 DNA MER2_type -22 323 1 3 1056 33 25 0 0 chr1 61770989 61771029 -135424403 + AT_rich Low_complexity Low_complexity 1 40 0 3 1056 270 0 0 0 chr1 61771368 61771398 -135424034 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1056 3109 47 3 5 chr1 61772792 61773181 -135422251 - MTA_Mm LTR MaLR -8 388 1 3 1056 1848 208 55 92 chr1 61773412 61773936 -135421496 + RMER19C LTR ERVK 107 611 0 3 1056 2088 180 123 2 chr1 61774810 61775239 -135420193 + RMER19B LTR ERVK 1 481 -421 3 1056 972 164 46 17 chr1 61775219 61775393 -135420039 + RMER19B LTR ERVK 717 895 -7 3 1056 30 27 0 0 chr1 61775521 61775558 -135419874 + AT_rich Low_complexity Low_complexity 1 37 0 3 1056 496 304 67 14 chr1 61775656 61775866 -135419566 + B4 SINE B4 2 222 -70 3 1056 295 235 15 0 chr1 61776058 61776126 -135419306 - ID4 SINE ID -14 69 1 3 1056 880 156 146 9 chr1 61776786 61777019 -135418413 - Lx9 LINE L1 -2 7642 7378 3 1056 234 0 0 0 chr1 61777498 61777524 -135417908 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1056 459 0 0 0 chr1 61778097 61778148 -135417284 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1056 6006 29 33 1 chr1 61778150 61778882 -135416550 - L1Md_F3 LINE L1 -14 6570 5816 3 1056 186 43 0 0 chr1 61778889 61778912 -135416520 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1056 700 232 102 28 chr1 61780104 61780428 -135415004 - ORR1D1 LTR MaLR 0 374 3 3 1056 1443 6 6 0 chr1 61781671 61781843 -135413589 - L1Md_A LINE L1 -2 6580 6408 3 1056 237 119 0 0 chr1 61781986 61782028 -135413404 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1056 306 302 101 48 chr1 61782880 61783068 -135412364 - HAL1-3A_ME LINE L1 -376 2482 2285 3 1056 260 53 26 0 chr1 61783068 61783106 -135412326 + (TTCCC)n Simple_repeat Simple_repeat 3 41 0 3 1056 189 0 0 0 chr1 61783110 61783131 -135412301 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 3 1056 970 217 71 34 chr1 61783184 61783451 -135411981 + RLTR40 LTR ERVK 22 298 -519 3 1056 560 182 0 16 chr1 61783453 61783576 -135411856 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 3 1056 351 0 0 0 chr1 61783576 61783615 -135411817 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1056 1773 316 106 12 chr1 61785556 61786386 -135409046 - Charlie1a DNA MER1_type -264 1191 284 3 1056 274 326 22 22 chr1 61786537 61786628 -135408804 - Charlie1a DNA MER1_type -1364 91 1 3 1056 393 22 0 0 chr1 61786963 61787009 -135408423 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 3 1056 477 50 0 0 chr1 61787343 61787403 -135408029 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1056 188 88 59 0 chr1 61787410 61787444 -135407988 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 4 1056 1103 187 18 46 chr1 61787596 61787815 -135407617 + B3 SINE B2 1 213 -3 4 1056 301 343 65 0 chr1 61790257 61790365 -135405067 - RSINE1 SINE B4 -7 158 44 4 1056 422 294 46 27 chr1 61791418 61791726 -135403706 + MTEa LTR MaLR 1 372 -7 4 1056 24 32 0 0 chr1 61792791 61792822 -135402610 + AT_rich Low_complexity Low_complexity 1 31 0 4 1056 737 73 109 0 chr1 61792960 61793070 -135402362 + B1_Mus2 SINE Alu 14 135 -12 4 1056 306 0 0 0 chr1 61793070 61793104 -135402328 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 4 1056 412 317 57 14 chr1 61793139 61793280 -135402152 - RSINE1 SINE B4 -15 150 4 4 1056 552 242 38 171 chr1 61793376 61793640 -135401792 + MTE2a LTR MaLR 5 233 -146 4 1056 313 208 92 20 chr1 61793656 61793754 -135401678 - L1MC4a LINE L1 -1203 6679 6575 4 1056 448 276 48 8 chr1 61793808 61793932 -135401500 + MTE2a LTR MaLR 251 379 0 4 1056 892 328 83 39 chr1 61794025 61794485 -135400947 + MLT1D LTR MaLR 18 497 -8 4 1056 775 191 147 42 chr1 61794732 61794923 -135400509 + B3 SINE B2 1 211 -5 4 1056 4097 62 0 0 chr1 61795106 61795624 -135399808 - L1Md_F2 LINE L1 -12 6570 6053 4 1056 3801 33 2 2 chr1 61795624 61796079 -135399353 + L1Md_F2 LINE L1 5596 6050 -532 4 1056 21 82 0 0 chr1 61797972 61798021 -135397411 + AT_rich Low_complexity Low_complexity 1 49 0 4 1056 270 81 0 0 chr1 61798519 61798556 -135396876 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1056 401 226 10 27 chr1 61799538 61799670 -135395762 - MTD LTR MaLR 0 419 246 4 1056 10057 101 48 8 chr1 61799670 61802314 -135393118 - L1_Mur1 LINE L1 -3134 2752 4 4 1056 3278 33 8 2 chr1 61803869 61804263 -135391169 - MTA_Mm LTR MaLR 0 396 1 4 1056 28 29 0 0 chr1 61804314 61804349 -135391083 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 544 296 67 53 chr1 61805480 61805780 -135389652 - MamRep137 DNA TcMar? -55 389 86 4 1056 23 0 0 0 chr1 61806320 61806343 -135389089 + AT_rich Low_complexity Low_complexity 1 23 0 4 1056 29 60 0 0 chr1 61806924 61806974 -135388458 + AT_rich Low_complexity Low_complexity 1 50 0 4 1056 663 170 50 29 chr1 61806981 61807120 -135388312 - B1_Mur2 SINE Alu -7 142 1 4 1056 21 0 0 0 chr1 61807336 61807357 -135388075 + AT_rich Low_complexity Low_complexity 1 21 0 4 1056 25 31 0 0 chr1 61807413 61807445 -135387987 + AT_rich Low_complexity Low_complexity 1 32 0 4 1056 499 251 135 48 chr1 61807508 61807738 -135387694 - Lx8 LINE L1 -3 7470 7221 4 1056 334 269 76 25 chr1 61807825 61808061 -135387371 - L1M5 LINE L1 -2192 3954 3707 4 1056 283 253 181 85 chr1 61808058 61808317 -135387115 + Lx9 LINE L1 7316 7599 -45 4 1056 345 223 131 41 chr1 61809749 61809894 -135385538 + MIR SINE MIR 86 243 -19 4 1056 381 22 0 0 chr1 61811126 61811172 -135384260 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1056 787 243 109 80 chr1 61811986 61812388 -135383044 + MTD LTR MaLR 2 415 -4 4 1056 24 0 0 0 chr1 61812409 61812433 -135382999 + AT_rich Low_complexity Low_complexity 1 24 0 4 1056 183 404 84 30 chr1 61812988 61813251 -135382181 + L4 LINE RTE 1478 1754 -275 4 1056 213 39 0 0 chr1 61813257 61813283 -135382149 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 4 1056 1718 236 7 45 chr1 61813994 61814419 -135381013 + MTD LTR MaLR 11 419 0 4 1056 492 18 0 0 chr1 61815391 61815448 -135379984 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1056 333 0 0 0 chr1 61815448 61815484 -135379948 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1056 272 318 13 22 chr1 61815697 61815797 -135379635 - PB1D10 SINE Alu -19 101 1 4 1056 267 169 28 14 chr1 61817117 61817138 -135378294 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 1056 197 65 0 31 chr1 61817138 61817170 -135378262 + (CCCTAA)n Simple_repeat Simple_repeat 1 31 0 4 1056 267 169 28 14 chr1 61817170 61817220 -135378212 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1056 213 39 0 0 chr1 61817215 61817241 -135378191 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1056 343 0 43 0 chr1 61817241 61817288 -135378144 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1056 22 0 0 0 chr1 61818373 61818395 -135377037 + AT_rich Low_complexity Low_complexity 1 22 0 4 1056 25 51 0 0 chr1 61818470 61818509 -135376923 + AT_rich Low_complexity Low_complexity 1 39 0 4 1056 332 347 32 0 chr1 61819394 61819518 -135375914 + MER2B DNA MER2_type 11 138 -198 4 1056 252 363 60 47 chr1 61819597 61819831 -135375601 + MER2 DNA MER2_type 80 316 -29 4 1056 658 181 0 14 chr1 61820075 61820221 -135375211 + (TA)n Simple_repeat Simple_repeat 1 144 0 4 1056 231 288 74 12 chr1 61820234 61820315 -135375117 + L2a LINE L2 3341 3426 0 4 1056 239 274 46 131 chr1 61820332 61820462 -135374970 + MIRb SINE MIR 104 222 -46 4 1056 683 232 21 0 chr1 61820750 61820892 -135374540 - B1_Mur1 SINE Alu 0 149 5 4 1056 252 143 0 0 chr1 61822340 61822382 -135373050 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1056 22 0 0 0 chr1 61822770 61822792 -135372640 + AT_rich Low_complexity Low_complexity 1 22 0 4 1056 738 191 214 21 chr1 61823728 61823915 -135371517 + URR1B DNA MER1_type 1 223 -2 4 1056 213 65 0 0 chr1 61823994 61824025 -135371407 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1056 767 261 79 11 chr1 61824211 61824518 -135370914 - Lx7 LINE L1 -203 5953 5597 4 1056 22 35 0 0 chr1 61824784 61824813 -135370619 + AT_rich Low_complexity Low_complexity 1 29 0 4 1056 306 0 0 0 chr1 61824929 61824963 -135370469 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 4 1056 1065 111 10 16 chr1 61824977 61825169 -135370263 + L1_Mus4 LINE L1 6446 6636 0 4 1056 21 36 0 0 chr1 61826074 61826102 -135369330 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 549 260 25 31 chr1 61827144 61827303 -135368129 - RSINE1 SINE B4 -3 162 5 4 1056 24 67 0 0 chr1 61827606 61827651 -135367781 + AT_rich Low_complexity Low_complexity 1 45 0 4 1056 4882 50 5 7 chr1 61827868 61828485 -135366947 + L1Md_F2 LINE L1 5966 6581 -1 4 1056 21 57 0 0 chr1 61828587 61828622 -135366810 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 783 285 79 23 chr1 61828828 61829094 -135366338 - Lx8 LINE L1 -150 7323 7043 4 1056 645 312 58 39 chr1 61832079 61832389 -135363043 - MER46C DNA MER2_type -22 316 1 4 1056 275 225 0 0 chr1 61832822 61832893 -135362539 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1056 29 78 0 0 chr1 61832988 61833052 -135362380 + AT_rich Low_complexity Low_complexity 1 64 0 4 1056 21 0 0 0 chr1 61833728 61833749 -135361683 + AT_rich Low_complexity Low_complexity 1 21 0 4 1056 710 316 55 69 chr1 61835219 61835494 -135359938 + B4A SINE B4 1 271 -21 4 1056 365 227 10 30 chr1 61835680 61835780 -135359652 - Lx6 LINE L1 -1 7459 7362 4 1056 207 69 0 0 chr1 61835970 61835999 -135359433 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1056 287 203 31 0 chr1 61836699 61836763 -135358669 + L1MD1 LINE L1 6154 6219 -23 4 1056 499 312 93 0 chr1 61836789 61836994 -135358438 - MIR SINE MIR -30 232 9 4 1056 22 35 0 0 chr1 61837145 61837174 -135358258 + AT_rich Low_complexity Low_complexity 1 29 0 4 1056 866 197 0 0 chr1 61837873 61838020 -135357412 - B1_Mus1 SINE Alu 0 148 2 4 1056 594 270 51 0 chr1 61838044 61838181 -135357251 + MTE2a LTR MaLR 1 144 -235 4 1056 257 286 36 0 chr1 61838183 61838239 -135357193 + MTE2a LTR MaLR 87 144 -235 4 1056 1125 259 23 47 chr1 61838241 61838541 -135356891 + MTE2a LTR MaLR 87 379 0 4 1056 464 259 141 73 chr1 61838900 61839241 -135356191 - L1MB3 LINE L1 -53 6130 5767 4 1056 31 0 0 0 chr1 61839329 61839360 -135356072 + AT_rich Low_complexity Low_complexity 1 31 0 4 1056 233 361 48 17 chr1 61839373 61839604 -135355828 - L1MC4a LINE L1 -1125 6757 6520 4 1056 381 22 0 0 chr1 61839960 61840006 -135355426 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1056 331 154 163 71 chr1 61840006 61840104 -135355328 - RMER19B LTR ERVK -75 827 721 4 1056 30 0 0 0 chr1 61840889 61840919 -135354513 + AT_rich Low_complexity Low_complexity 1 30 0 4 1056 246 415 79 0 chr1 61842000 61842152 -135353280 + MER5A1 DNA MER1_type 1 164 -2 4 1056 1039 121 0 0 chr1 61845330 61845471 -135349961 + B1_Mus1 SINE Alu 2 142 -6 4 1056 841 78 15 15 chr1 61845475 61845606 -135349826 + (TATATG)n Simple_repeat Simple_repeat 2 132 0 4 1056 186 43 0 0 chr1 61845606 61845629 -135349803 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1056 210 71 0 0 chr1 61845631 61845659 -135349773 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1056 216 0 0 0 chr1 61845776 61845800 -135349632 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 4 1056 4883 74 0 11 chr1 61846022 61846676 -135348756 + L1Md_F2 LINE L1 5936 6582 0 4 1056 2573 64 0 0 chr1 61846684 61847012 -135348420 + L1_Mus1 LINE L1 6240 6567 0 4 1056 230 361 61 10 chr1 61847384 61847482 -135347950 + ORR1E LTR MaLR 9 111 -248 4 1056 456 19 0 0 chr1 61851498 61851551 -135343881 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1056 2007 162 50 3 chr1 61852207 61852567 -135342865 - Lx LINE L1 0 6654 6278 4 1056 2926 69 53 2 chr1 61852567 61853001 -135342431 + MusHAL1 LINE L1 1505 1960 -752 4 1056 423 0 0 0 chr1 61853636 61853683 -135341749 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1056 369 0 0 0 chr1 61854652 61854693 -135340739 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1056 598 58 11 11 chr1 61854857 61854945 -135340487 + (TTCTC)n Simple_repeat Simple_repeat 3 90 0 5 1056 23 33 0 0 chr1 61856508 61856538 -135338894 + AT_rich Low_complexity Low_complexity 1 30 0 5 1056 272 366 69 17 chr1 61856625 61856800 -135338632 - MLT1E3 LTR MaLR -2 622 439 5 1056 1902 142 3 52 chr1 61857339 61857666 -135337766 - RLTR10E LTR ERVK 0 311 1 5 1056 456 321 96 22 chr1 61857837 61858108 -135337324 - MLT1G LTR MaLR -95 496 206 5 1056 596 287 52 73 chr1 61858534 61858917 -135336515 - MTEa LTR MaLR -4 375 1 5 1056 495 315 27 0 chr1 61858973 61859119 -135336313 - ID_B1 SINE B4 -1 223 74 5 1056 272 374 60 24 chr1 61859647 61859814 -135335618 + MER5A DNA MER1_type 14 186 -3 5 1056 21 0 0 0 chr1 61859968 61859989 -135335443 + AT_rich Low_complexity Low_complexity 1 21 0 5 1056 9117 127 18 9 chr1 61861848 61863580 -135331852 - Lx2 LINE L1 -2 6995 5251 5 1056 215 367 102 34 chr1 61864374 61864633 -135330799 - MIR SINE MIR -6 262 2 5 1057 2010 173 59 33 chr1 61866439 61866960 -135328472 + RMER4B LTR ERVK 17 585 0 5 1057 1213 28 0 0 chr1 61867523 61867665 -135327767 - L1Md_F2 LINE L1 -234 6348 6207 5 1057 660 77 92 17 chr1 61867665 61867784 -135327648 + L1Md_F2 LINE L1 6444 6571 -11 5 1057 183 80 0 0 chr1 61868266 61868291 -135327141 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 5 1057 234 0 0 0 chr1 61868799 61868825 -135326607 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1057 427 306 29 64 chr1 61869186 61869357 -135326075 - RSINE1 SINE B4 0 165 1 5 1057 957 153 0 0 chr1 61871006 61871182 -135324250 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 1057 468 365 56 9 chr1 61871522 61871738 -135323694 + MIR SINE MIR 35 260 -2 5 1057 812 257 14 10 chr1 61871878 61872086 -135323346 + B3 SINE B2 2 210 -6 5 1057 269 364 149 25 chr1 61872108 61872424 -135323008 - MLT1J LTR MaLR -145 367 13 5 1057 275 289 153 48 chr1 61872441 61872595 -135322837 + Charlie25 DNA MER1_type 212 382 -2142 5 1057 378 0 0 0 chr1 61872595 61872637 -135322795 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1057 275 289 153 48 chr1 61872637 61872711 -135322721 + Charlie25 DNA MER1_type 383 464 -2060 5 1057 411 332 126 20 chr1 61872885 61873226 -135322206 + Charlie25 DNA MER1_type 788 1164 -1360 5 1057 684 0 0 0 chr1 61873493 61873569 -135321863 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 5 1057 377 333 113 16 chr1 61873923 61874170 -135321262 + Charlie25 DNA MER1_type 2109 2379 -145 5 1057 264 327 64 81 chr1 61874825 61874998 -135320434 + MER5B DNA MER1_type 8 177 -1 5 1057 319 354 12 18 chr1 61876018 61876182 -135319250 - RSINE1 SINE B4 0 165 3 5 1057 659 248 130 7 chr1 61876323 61876477 -135318955 + ID_B1 SINE B4 49 221 -3 5 1057 1378 67 0 15 chr1 61877103 61877299 -135318133 + L1Md_F2 LINE L1 6379 6571 -11 5 1057 333 0 0 0 chr1 61877329 61877366 -135318066 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1057 534 289 12 59 chr1 61877854 61878023 -135317409 - B4 SINE B4 -129 163 3 5 1057 1719 255 69 11 chr1 61879853 61880373 -135315059 - Lx8 LINE L1 -596 6877 6328 5 1057 231 188 0 0 chr1 61880914 61880962 -135314470 + (TATG)n Simple_repeat Simple_repeat 4 51 0 5 1057 183 329 125 59 chr1 61881736 61881888 -135313544 + MIRc SINE MIR 21 182 -86 5 1057 2295 172 63 14 chr1 61885553 61885996 -135309436 - RMER1B Other Other -19 1047 583 5 1057 1100 226 159 0 chr1 61886001 61886253 -135309179 - RMER1B Other Other -732 334 43 5 1057 3076 53 44 0 chr1 61886270 61886683 -135308749 + Lx3_Mus LINE L1 6579 7009 0 5 1057 189 0 0 0 chr1 61890608 61890629 -135304803 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1057 4700 54 40 7 chr1 61890640 61891259 -135304173 - L1_Mus2 LINE L1 0 6566 5927 5 1057 245 343 71 0 chr1 61891260 61891330 -135304102 - B1_Mur2 SINE Alu -6 143 69 5 1057 217 48 71 0 chr1 61891719 61891761 -135303671 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1057 456 35 0 0 chr1 61891852 61891910 -135303522 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 5 1057 897 210 101 21 chr1 61891944 61892230 -135303202 + RLTR20A2 LTR ERVK 1 284 -284 5 1057 519 287 23 41 chr1 61892208 61892290 -135303142 + RLTR20A2 LTR ERVK 411 490 -88 5 1057 369 0 0 0 chr1 61892290 61892331 -135303101 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 5 1057 519 287 23 41 chr1 61892331 61892419 -135303013 + RLTR20A2 LTR ERVK 491 577 -1 5 1057 4848 214 52 43 chr1 61892492 61893730 -135301702 - Lx9 LINE L1 0 7644 6396 5 1057 24 0 0 0 chr1 61893748 61893772 -135301660 + AT_rich Low_complexity Low_complexity 1 24 0 5 1057 895 247 42 52 chr1 61894424 61894731 -135300701 - Lx8 LINE L1 -350 7123 6820 5 1057 202 182 0 0 chr1 61894735 61894768 -135300664 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1057 235 306 108 36 chr1 61898021 61898160 -135297272 - MLT1A LTR MaLR -160 214 66 5 1057 21 0 0 0 chr1 61899219 61899240 -135296192 + AT_rich Low_complexity Low_complexity 1 21 0 5 1057 267 17 100 0 chr1 61899566 61899626 -135295806 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 5 1057 317 43 0 21 chr1 61901011 61901059 -135294373 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1057 326 300 18 0 chr1 61901244 61901354 -135294078 - B3A SINE B2 -85 113 2 5 1057 479 0 0 0 chr1 61902405 61902466 -135292966 - L1Md_T LINE L1 0 6582 6522 5 1057 264 170 0 0 chr1 61902793 61902846 -135292586 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1057 207 100 0 0 chr1 61905457 61905487 -135289945 + (ATG)n Simple_repeat Simple_repeat 3 32 0 5 1057 188 0 0 69 chr1 61906296 61906325 -135289107 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1057 252 0 0 0 chr1 61906532 61906560 -135288872 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1057 491 257 135 7 chr1 61906572 61906713 -135288719 - B3A SINE B2 -39 159 1 5 1057 745 251 81 40 chr1 61906823 61907148 -135288284 + ORR1D1 LTR MaLR 3 374 0 5 1057 557 318 137 46 chr1 61907262 61907657 -135287775 - MER63B DNA AcHobo 0 436 6 5 1057 403 271 75 66 chr1 61907946 61908159 -135287273 + B3 SINE B2 1 215 -1 5 1057 225 299 114 21 chr1 61908786 61908926 -135286506 + RSINE1 SINE B4 3 155 -10 5 1057 329 287 40 23 chr1 61909417 61909592 -135285840 - Lx9 LINE L1 -79 7565 7388 5 1057 231 338 0 0 chr1 61910009 61910080 -135285352 - MTEa LTR MaLR -295 84 14 5 1057 8837 156 25 11 chr1 61910711 61912640 -135282792 - Lx3C LINE L1 -760 6216 4263 5 1057 580 99 0 42 chr1 61912639 61912734 -135282698 + Lx3C LINE L1 4170 4260 -1617 5 1057 814 103 175 6 chr1 61912733 61912899 -135282533 - MusHAL1 LINE L1 -565 2147 1954 5 1057 3942 172 30 7 chr1 61912900 61913638 -135281794 + Lx3C LINE L1 6221 6975 -1 5 1057 237 276 107 19 chr1 61915450 61915609 -135279823 - L1ME1 LINE L1 -220 6132 5960 5 1057 250 307 142 18 chr1 61915905 61916180 -135279252 - L1MC LINE L1 -749 5397 5089 5 1057 384 104 0 0 chr1 61916247 61916314 -135279118 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1057 731 269 36 50 chr1 61916354 61916573 -135278859 - B3 SINE B2 0 216 1 5 1057 310 294 151 5 chr1 61916671 61916901 -135278531 - L1ME1 LINE L1 -1455 4864 4597 5 1057 22 70 0 0 chr1 61916916 61916959 -135278473 + AT_rich Low_complexity Low_complexity 1 43 0 5 1057 225 164 14 56 chr1 61917020 61917149 -135278283 + (TA)n Simple_repeat Simple_repeat 1 123 0 5 1057 423 278 127 18 chr1 61917205 61917425 -135278007 - L1ME1 LINE L1 -1947 4372 4129 5 1057 4005 52 0 29 chr1 61917636 61918151 -135277281 - L1Md_F2 LINE L1 -14 6568 6069 5 1057 1241 40 0 0 chr1 61918151 61918303 -135277129 + L1Md_A LINE L1 5910 6061 -521 5 1057 1444 43 0 55 chr1 61918339 61918538 -135276894 + B2_Mm2 SINE B2 1 188 -7 5 1057 28 79 0 0 chr1 61918700 61918763 -135276669 + AT_rich Low_complexity Low_complexity 1 63 0 5 1057 618 280 161 32 chr1 61918765 61919502 -135275930 - L1ME1 LINE L1 -2719 3600 2777 5 1057 369 0 0 0 chr1 61919517 61919558 -135275874 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1057 213 39 0 0 chr1 61920640 61920666 -135274766 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 5 1057 369 0 0 0 chr1 61920820 61920861 -135274571 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1057 871 254 34 0 chr1 61920923 61921128 -135274304 - B3 SINE B2 -4 212 1 5 1057 513 322 142 12 chr1 61921400 61921739 -135273693 - L1ME1 LINE L1 -5926 474 92 5 1057 221 310 17 17 chr1 61921835 61921894 -135273538 + ID4_ SINE ID 1 59 -24 5 1057 2025 283 95 49 chr1 61922854 61924017 -135271415 + L1MC3 LINE L1 6475 7690 -95 5 1057 195 375 9 26 chr1 61926763 61926878 -135268554 + MER5B DNA MER1_type 61 173 -5 5 1057 234 0 0 0 chr1 61926878 61926904 -135268528 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1057 22 0 0 0 chr1 61927062 61927084 -135268348 + AT_rich Low_complexity Low_complexity 1 22 0 5 1057 288 53 0 0 chr1 61929520 61929558 -135265874 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1057 180 0 0 0 chr1 61929558 61929577 -135265855 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1057 450 36 0 0 chr1 61929921 61929977 -135265455 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1057 189 107 0 0 chr1 61929977 61930005 -135265427 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 5 1057 420 267 129 8 chr1 61931005 61931137 -135264295 + B1_Mur2 SINE Alu 2 149 0 5 1057 1129 258 49 67 chr1 61931179 61931507 -135263925 - MTE2b LTR MaLR 0 379 58 5 1057 219 194 57 19 chr1 61932132 61932237 -135263195 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1057 434 304 101 20 chr1 61932572 61932770 -135262662 + MIRb SINE MIR 8 221 -47 5 1057 28 29 0 0 chr1 61933507 61933542 -135261890 + AT_rich Low_complexity Low_complexity 1 35 0 5 1057 266 350 58 7 chr1 61934011 61934149 -135261283 - Lx8 LINE L1 -179 7294 7150 5 1057 2449 43 0 0 chr1 61935912 61936214 -135259218 + L1Md_F2 LINE L1 6281 6582 0 5 1057 200 380 9 27 chr1 61937673 61937784 -135257648 - MER5A DNA MER1_type -80 109 1 5 1057 216 306 0 40 chr1 61939191 61939266 -135256166 - RSINE1 SINE B4 -83 82 11 5 1057 14731 18 0 0 chr1 61939345 61941053 -135254379 + L1Md_T LINE L1 3879 5586 -297 5 1057 8534 29 0 0 chr1 61941053 61942049 -135253383 + L1Md_T LINE L1 5587 6582 0 5 1057 344 167 107 10 chr1 61942210 61942313 -135253119 + Lx9 LINE L1 7532 7644 0 5 1057 1068 93 0 0 chr1 61942316 61942456 -135252976 + B1_Mus2 SINE Alu 2 141 -6 5 1057 216 0 0 0 chr1 61942458 61942482 -135252950 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1057 305 235 194 0 chr1 61942864 61942962 -135252470 + MLT1B LTR MaLR 266 382 -8 6 1057 201 278 0 0 chr1 61943416 61943470 -135251962 + T-rich Low_complexity Low_complexity 1 54 0 6 1057 1614 191 92 0 chr1 61944288 61944634 -135250798 - ORR1C2 LTR MaLR -6 378 1 6 1057 5010 32 2 0 chr1 61944789 61945378 -135250054 - L1Md_T LINE L1 0 6582 5993 6 1057 345 272 38 72 chr1 61947401 61947663 -135247769 - Lx9 LINE L1 -6 7638 7386 6 1057 673 258 88 137 chr1 61948391 61948858 -135246574 - RLTR12B LTR ERVK -43 485 42 6 1057 789 82 0 0 chr1 61949271 61949381 -135246051 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1057 7420 83 24 3 chr1 61951636 61953017 -135242415 - L1_Mus3 LINE L1 -2 6636 5224 6 1057 583 254 51 0 chr1 61953073 61953211 -135242221 + B1_Mur2 SINE Alu 3 147 -2 6 1057 1390 244 131 35 chr1 61953258 61953687 -135241745 + RMER15 LTR ERVL 1 470 -105 6 1057 216 0 0 0 chr1 61953687 61953711 -135241721 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1057 288 369 9 9 chr1 61955321 61955433 -135239999 - PB1D10 SINE Alu -5 112 1 6 1057 3230 201 90 10 chr1 61955660 61956475 -135238957 + Lx9 LINE L1 6765 7644 0 6 1057 806 119 33 0 chr1 61956683 61956834 -135238598 + (TATATG)n Simple_repeat Simple_repeat 1 156 0 6 1057 514 248 10 0 chr1 61956911 61957012 -135238420 - B1_Mur1 SINE Alu -34 115 14 6 1057 719 145 302 0 chr1 61957133 61957305 -135238127 + URR1A DNA MER1_type 1 224 -2 6 1057 879 96 235 31 chr1 61957457 61957619 -135237813 - B2_Mm2 SINE B2 0 195 1 6 1057 472 320 87 39 chr1 61957674 61958032 -135237400 - Lx9 LINE L1 -294 7350 6976 6 1057 464 264 92 26 chr1 61958208 61958360 -135237072 - RSINE1 SINE B4 0 165 4 6 1057 210 91 0 0 chr1 61960085 61960118 -135235314 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1057 270 125 0 0 chr1 61960666 61960714 -135234718 + (TATG)n Simple_repeat Simple_repeat 3 50 0 6 1057 454 221 156 58 chr1 61961285 61961458 -135233974 + B3A SINE B2 2 191 -7 6 1057 887 123 135 0 chr1 61962124 61962294 -135233138 - L1_Mus4 LINE L1 -3 6633 6441 6 1057 513 239 0 0 chr1 61963973 61964086 -135231346 + PB1D9 SINE Alu 1 113 -7 6 1057 315 0 0 0 chr1 61964458 61964493 -135230939 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1057 234 297 10 10 chr1 61964671 61964773 -135230659 + (TATATG)n Simple_repeat Simple_repeat 4 105 0 6 1057 21 0 0 0 chr1 61964837 61964858 -135230574 + AT_rich Low_complexity Low_complexity 1 21 0 6 1057 9540 79 31 12 chr1 61964858 61966454 -135228978 - Lx3_Mus LINE L1 0 7009 5404 6 1057 22 35 0 0 chr1 61966516 61966545 -135228887 + AT_rich Low_complexity Low_complexity 1 29 0 6 1057 21 36 0 0 chr1 61967548 61967576 -135227856 + AT_rich Low_complexity Low_complexity 1 28 0 6 1057 311 306 23 70 chr1 61967594 61967738 -135227694 - MIRb SINE MIR -54 214 74 6 1057 281 116 0 44 chr1 61968721 61968757 -135226675 + tRNA-Arg-AGA tRNA tRNA 1 35 -41 6 1057 5219 78 17 3 chr1 61968757 61969463 -135225969 + L1Md_F2 LINE L1 5867 6582 0 6 1057 237 33 0 0 chr1 61969497 61969527 -135225905 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1057 462 18 0 0 chr1 61969812 61969867 -135225565 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1057 252 0 0 0 chr1 61969869 61969897 -135225535 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1057 391 301 91 12 chr1 61972632 61972797 -135222635 - MIR SINE MIR -72 190 13 6 1057 222 118 0 0 chr1 61972864 61972898 -135222534 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1057 535 231 139 7 chr1 61972901 61973045 -135222387 - RSINE1 SINE B4 0 165 3 6 1057 552 279 132 0 chr1 61975537 61975673 -135219759 - RSINE1 SINE B4 0 165 12 6 1057 205 135 39 0 chr1 61975824 61975876 -135219556 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1057 369 0 0 0 chr1 61978591 61978632 -135216800 + (GGGAA)n Simple_repeat Simple_repeat 1 41 0 6 1057 261 0 0 0 chr1 61980137 61980166 -135215266 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1057 404 200 72 33 chr1 61980431 61980612 -135214820 + L1MA6 LINE L1 6108 6295 -5 6 1057 220 310 0 0 chr1 61981059 61981117 -135214315 - MIRb SINE MIR -80 188 131 6 1057 23 0 0 0 chr1 61985247 61985270 -135210162 + AT_rich Low_complexity Low_complexity 1 23 0 6 1057 180 158 0 0 chr1 61987339 61987377 -135208055 + T-rich Low_complexity Low_complexity 1 38 0 6 1057 645 236 49 14 chr1 61987397 61987539 -135207893 + B1_Mm SINE Alu 1 147 0 6 1057 284 210 12 0 chr1 61987571 61987652 -135207780 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 6 1057 654 237 37 0 chr1 61990696 61990831 -135204601 + B1_Mur2 SINE Alu 1 140 -9 6 1057 1190 262 114 2 chr1 61990911 61991324 -135204108 + Lx8 LINE L1 6881 7339 -134 6 1057 917 118 40 17 chr1 61992387 61992560 -135202872 - Lx LINE L1 -1 6653 6477 6 1057 770 295 94 13 chr1 61992707 61993016 -135202416 + MER2 DNA MER2_type 6 339 -6 6 1057 23 0 0 0 chr1 61993155 61993178 -135202254 + AT_rich Low_complexity Low_complexity 1 23 0 6 1057 1432 134 9 13 chr1 61993193 61993419 -135202013 + URR1B DNA MER1_type 1 225 0 6 1057 7723 48 4 2 chr1 61993468 61994654 -135200778 - L1Md_F2 LINE L1 -1 6581 5394 6 1057 357 24 0 0 chr1 61996267 61996309 -135199123 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 6 1058 468 0 0 0 chr1 61997899 61997951 -135197481 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1058 189 121 0 0 chr1 61998450 61998483 -135196949 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 6 1058 4650 109 39 13 chr1 61998577 61999292 -135196140 - Lx LINE L1 -6 6648 5915 6 1058 642 26 0 0 chr1 61999312 61999388 -135196044 + (GAAA)n Simple_repeat Simple_repeat 3 78 0 6 1058 432 163 0 0 chr1 62000259 62000345 -135195087 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1058 1644 216 137 22 chr1 62000888 62001360 -135194072 + RMER4B LTR ERVK 17 467 -118 2 1058 1518 117 14 64 chr1 62001946 62002229 -135193203 + L1_Mus3 LINE L1 6367 6635 -3 3 1058 189 268 89 0 chr1 62002295 62002351 -135193081 - MIRm SINE MIR -143 133 73 4 1058 722 201 21 7 chr1 62003077 62003217 -135192215 + B1_Mur3 SINE Alu 8 149 0 5 1058 280 248 43 34 chr1 62004421 62004538 -135190894 + L1MA9 LINE L1 6162 6279 -33 6 1058 743 327 50 8 chr1 62004563 62004822 -135190610 - B4A SINE B4 -21 271 2 7 1058 1006 292 111 21 chr1 62005112 62005646 -135189786 + L1MA6 LINE L1 5599 6180 -120 8 1058 225 0 0 0 chr1 62006065 62006090 -135189342 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1058 441 0 0 0 chr1 62006090 62006138 -135189294 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1058 230 314 57 91 chr1 62006668 62006878 -135188554 - ORR1E LTR MaLR -112 247 45 1 1058 635 289 130 31 chr1 62007047 62007420 -135188012 + RMER20B LTR ERVK 93 516 0 1 1058 470 297 83 23 chr1 62007633 62007850 -135187582 + MER119 DNA MER1_type 347 576 -7 1 1058 25 51 0 0 chr1 62008772 62008811 -135186621 + AT_rich Low_complexity Low_complexity 1 39 0 1 1058 183 263 0 0 chr1 62009340 62009378 -135186054 - L2 LINE L2 -2061 1358 1321 1 1058 245 319 0 0 chr1 62009718 62009787 -135185645 + ID SINE ID 5 73 -151 1 1058 2794 131 5 0 chr1 62010412 62010823 -135184609 - MTC LTR MaLR -8 413 1 1 1058 213 265 20 0 chr1 62011393 62011442 -135183990 - L2 LINE L2 -1035 2384 2335 1 1058 423 0 0 0 chr1 62011862 62011909 -135183523 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1058 1092 316 62 17 chr1 62012425 62013117 -135182315 - L1ME2z LINE L1 -13 6431 5709 2 1058 291 261 46 0 chr1 62013310 62013375 -135182057 + ID4 SINE ID 14 81 -2 2 1058 629 306 11 6 chr1 62013394 62013575 -135181857 + B3A SINE B2 2 183 -15 2 1058 376 327 11 74 chr1 62015394 62015569 -135179863 - RSINE1 SINE B4 0 165 2 2 1058 267 283 50 0 chr1 62016125 62016224 -135179208 + MER106B DNA MER1_type 434 537 -522 2 1058 259 136 0 57 chr1 62016258 62016328 -135179104 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 1058 484 308 95 7 chr1 62016328 62016475 -135178957 - RSINE1 SINE B4 0 165 6 2 1058 848 244 122 33 chr1 62016477 62016926 -135178506 + MER106B DNA MER1_type 539 1027 -32 2 1058 325 326 14 42 chr1 62017739 62017883 -135177549 - B1F1 SINE Alu 0 149 10 2 1058 537 297 13 74 chr1 62017925 62018154 -135177278 + B3 SINE B2 2 216 0 2 1058 212 259 0 0 chr1 62018177 62018231 -135177201 - B3 SINE B2 -147 69 16 2 1058 543 122 17 93 chr1 62019430 62019548 -135175884 - B1_Mur4 SINE Alu -1 149 41 3 1058 343 132 0 0 chr1 62019583 62019636 -135175796 - B1_Mus1 SINE Alu -93 55 3 3 1058 255 202 25 49 chr1 62019636 62019670 -135175762 - ID_B1 SINE B4 -79 129 59 3 1058 546 312 115 36 chr1 62020435 62020714 -135174718 + MLT1A0 LTR MaLR 1 301 -64 3 1058 470 103 0 11 chr1 62020789 62020877 -135174555 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 1058 903 42 0 16 chr1 62021409 62021530 -135173902 + B1_Mus2 SINE Alu 29 147 0 3 1058 351 167 0 0 chr1 62021531 62021621 -135173811 + A-rich Low_complexity Low_complexity 1 90 0 3 1058 1791 176 152 0 chr1 62021627 62021962 -135173470 + ORR1B1 LTR MaLR 1 386 -8 3 1058 228 261 0 0 chr1 62023778 62023824 -135171608 - B1F SINE Alu -91 58 13 3 1058 202 421 40 0 chr1 62025454 62025580 -135169852 - MIRm SINE MIR -142 134 4 3 1058 213 146 0 0 chr1 62026164 62026212 -135169220 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1058 195 129 0 0 chr1 62028156 62028187 -135167245 + (GAA)n Simple_repeat Simple_repeat 2 32 0 4 1058 180 0 0 0 chr1 62029328 62029348 -135166084 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1058 197 266 62 25 chr1 62031755 62031836 -135163596 - L3 LINE CR1 -3057 1432 1349 4 1058 1556 194 76 45 chr1 62032425 62032781 -135162651 - ORR1B2 LTR MaLR 0 367 1 4 1058 3440 3 0 0 chr1 62033036 62033421 -135162011 + L1Md_T LINE L1 6198 6582 0 4 1058 227 259 17 0 chr1 62035344 62035402 -135160030 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1058 616 309 91 51 chr1 62035403 62035833 -135159599 - MLT2B4 LTR ERVL -19 698 265 4 1058 385 366 26 13 chr1 62036156 62036311 -135159121 + RMER30 DNA MER1_type 7 163 -39 4 1058 202 283 0 0 chr1 62037292 62037345 -135158087 + GA-rich Low_complexity Low_complexity 4 56 0 4 1058 198 339 90 33 chr1 62038480 62038602 -135156830 - MIR SINE MIR -98 164 36 5 1058 341 321 60 15 chr1 62039215 62039348 -135156084 + MER45A DNA Tip100 1 139 -39 5 1058 324 0 0 0 chr1 62041022 62041058 -135154374 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1058 7571 72 12 0 chr1 62042607 62043798 -135151634 - L1_Mus2 LINE L1 -2 6564 5364 5 1058 245 0 86 0 chr1 62045756 62045791 -135149641 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1058 739 318 69 44 chr1 62048132 62048451 -135146981 + RCHARR1 DNA MER1_type 2 328 -646 5 1058 10077 156 28 31 chr1 62048453 62049729 -135145703 - L1_Mur3 LINE L1 -2559 3318 2050 5 1058 306 0 0 0 chr1 62049729 62049763 -135145669 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1058 10077 156 28 31 chr1 62049763 62049916 -135145516 - L1_Mur3 LINE L1 -3828 2049 1887 5 1058 2359 81 3 3 chr1 62049916 62050239 -135145193 - L1_Mus1 LINE L1 0 6567 6245 5 1058 10077 173 68 26 chr1 62050239 62051193 -135144239 - L1_Mur3 LINE L1 -3991 1886 875 5 1058 603 232 141 0 chr1 62051493 62051713 -135143719 + RCHARR1 DNA MER1_type 724 974 0 5 1058 282 348 37 49 chr1 62052060 62052124 -135143308 + RSINE1 SINE B4 3 63 -102 5 1058 198 0 0 0 chr1 62052124 62052146 -135143286 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1058 282 348 37 49 chr1 62052146 62052244 -135143188 + RSINE1 SINE B4 64 162 -3 5 1058 36 40 0 0 chr1 62052264 62052314 -135143118 + AT_rich Low_complexity Low_complexity 1 50 0 6 1058 213 349 82 44 chr1 62052351 62052510 -135142922 - L2a LINE L2 -1 3425 3261 6 1058 353 324 154 31 chr1 62052702 62053002 -135142430 - L2a LINE L2 -448 2971 2649 6 1058 189 0 0 0 chr1 62053002 62053023 -135142409 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1058 353 324 154 31 chr1 62053023 62053111 -135142321 - L2a LINE L2 -771 2648 2535 6 1058 256 105 35 17 chr1 62054576 62054634 -135140798 + T-rich Low_complexity Low_complexity 2 60 0 6 1058 23 0 0 0 chr1 62055228 62055251 -135140181 + AT_rich Low_complexity Low_complexity 1 23 0 6 1058 251 303 0 0 chr1 62056411 62056477 -135138955 + ID4 SINE ID 1 66 -17 6 1058 226 163 23 23 chr1 62056484 62056572 -135138860 + (CAGAGA)n Simple_repeat Simple_repeat 5 92 0 6 1058 480 318 8 31 chr1 62057880 62058010 -135137422 + RSINE1 SINE B4 39 165 0 6 1058 675 213 29 14 chr1 62058098 62058236 -135137196 + B1_Mur2 SINE Alu 10 149 0 6 1058 349 296 114 23 chr1 62058840 62058851 -135136581 - B3A SINE B2 -6 192 182 7 1058 300 53 0 0 chr1 62058851 62058889 -135136543 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 7 1058 349 296 114 23 chr1 62058889 62059053 -135136379 - B3A SINE B2 -17 181 2 7 1058 261 227 138 2 chr1 62059240 62059351 -135136081 - MIR SINE MIR -128 134 14 7 1058 309 266 0 0 chr1 62059588 62059652 -135135780 - MTE2b LTR MaLR -315 64 1 7 1058 1942 213 32 2 chr1 62060757 62061157 -135134275 + Lx5 LINE L1 6629 7040 -10 7 1058 42 48 0 0 chr1 62061157 62061220 -135134212 + AT_rich Low_complexity Low_complexity 1 63 0 7 1058 576 0 0 0 chr1 62061965 62062029 -135133403 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1058 216 184 0 39 chr1 62063790 62063841 -135131591 + T-rich Low_complexity Low_complexity 1 49 0 7 1058 252 100 0 0 chr1 62065345 62065385 -135130047 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1058 198 0 0 0 chr1 62065433 62065455 -135129977 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1058 270 294 86 66 chr1 62067680 62067973 -135127459 + RSINE1 SINE B4 8 274 -18 8 1058 461 327 93 19 chr1 62068232 62068447 -135126985 + MIR SINE MIR 2 232 -30 8 1058 486 0 0 0 chr1 62068521 62068575 -135126857 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 1058 1180 286 57 48 chr1 62070212 62070583 -135124849 - MTEa LTR MaLR 0 379 6 8 1058 198 348 31 6 chr1 62073658 62073820 -135121612 + L2a LINE L2 3261 3426 0 8 1058 287 342 49 33 chr1 62075747 62075992 -135119440 - L1M5 LINE L1 -562 5678 5430 8 1058 383 329 154 9 chr1 62076009 62076242 -135119190 - L1M5 LINE L1 -762 5384 5118 8 1058 461 347 88 5 chr1 62076301 62076495 -135118937 + ID_B1 SINE B4 8 217 -7 8 1058 590 307 21 7 chr1 62076584 62076873 -135118559 - L1M5 LINE L1 -1229 4917 4625 8 1058 303 309 25 0 chr1 62077150 62077177 -135118255 - ID_B1 SINE B4 -123 101 42 8 1058 321 222 0 0 chr1 62077177 62077231 -135118201 - ID4 SINE ID -11 72 19 8 1058 303 309 25 0 chr1 62077231 62077246 -135118186 - ID SINE ID -123 41 3 8 1058 746 267 39 15 chr1 62077275 62077480 -135117952 - B3 SINE B2 -6 210 1 8 1058 283 338 31 13 chr1 62078024 62078252 -135117180 - L1M5 LINE L1 -2157 3989 3758 8 1058 216 0 0 0 chr1 62078310 62078334 -135117098 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1058 249 57 0 0 chr1 62079925 62079960 -135115472 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 9 1058 195 129 0 0 chr1 62080300 62080331 -135115101 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1058 182 33 0 62 chr1 62080475 62080507 -135114925 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 9 1058 420 271 44 6 chr1 62080639 62080821 -135114611 - L1MA6 LINE L1 -77 6223 6035 9 1058 562 321 112 70 chr1 62080821 62081179 -135114253 + MTE2a LTR MaLR 3 375 -4 9 1058 581 330 34 83 chr1 62082131 62082515 -135112917 - MLT1D LTR MaLR -106 399 35 9 1058 203 193 0 34 chr1 62084383 62084442 -135110990 + CT-rich Low_complexity Low_complexity 2 58 0 9 1058 243 0 0 0 chr1 62086005 62086032 -135109400 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1058 357 312 7 21 chr1 62086989 62087130 -135108302 - HAL1 LINE L1 -700 1807 1669 9 1058 22 0 0 0 chr1 62088089 62088111 -135107321 + AT_rich Low_complexity Low_complexity 1 22 0 1 1058 570 267 54 47 chr1 62089839 62090106 -135105326 - MTEb LTR MaLR 0 379 91 1 1058 475 358 7 20 chr1 62090092 62090243 -135105189 - MTEb LTR MaLR -208 151 3 1 1058 204 40 0 0 chr1 62090470 62090495 -135104937 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1058 211 306 51 59 chr1 62091748 62091866 -135103566 + L2c LINE L2 3211 3327 -60 1 1058 280 169 26 0 chr1 62092176 62092253 -135103179 + GA-rich Low_complexity Low_complexity 2 80 0 1 1058 281 272 26 9 chr1 62095824 62095939 -135099493 - L1MB8 LINE L1 -13 6165 6049 1 1058 328 333 161 18 chr1 62096032 62096255 -135099177 - L1MD3 LINE L1 -2064 5931 5677 1 1058 372 43 0 0 chr1 62096265 62096311 -135099121 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1058 802 33 41 0 chr1 62096311 62096432 -135099000 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 1058 287 256 33 22 chr1 62096434 62096526 -135098906 - L1MD3 LINE L1 -541 5637 5545 1 1058 222 386 69 0 chr1 62097247 62097348 -135098084 + L2b LINE L2 3260 3367 -8 1 1058 35 0 0 0 chr1 62097573 62097608 -135097824 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 253 350 118 28 chr1 62098582 62098794 -135096638 - MIRm SINE MIR -19 257 27 1 1058 21 57 0 0 chr1 62098912 62098947 -135096485 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 24 32 0 0 chr1 62099047 62099078 -135096354 + AT_rich Low_complexity Low_complexity 1 31 0 1 1058 208 116 22 44 chr1 62099078 62099123 -135096309 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1 1058 514 265 63 25 chr1 62101208 62101367 -135094065 + RSINE1 SINE B4 1 165 0 1 1058 224 130 22 0 chr1 62101422 62101468 -135093964 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1058 432 0 0 0 chr1 62102259 62102307 -135093125 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1058 1195 286 52 65 chr1 62103215 62104026 -135091406 - L1MA9 LINE L1 -182 6130 5314 1 1058 298 283 18 62 chr1 62104037 62104079 -135091353 - BC1_Mm scRNA scRNA -39 113 74 1 1058 195 42 0 0 chr1 62104079 62104103 -135091329 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 1058 298 283 18 62 chr1 62104103 62104173 -135091259 - BC1_Mm scRNA scRNA -79 73 6 1 1058 244 262 126 0 chr1 62104175 62104358 -135091074 - L1MA9 LINE L1 -840 5300 5095 1 1058 455 355 5 22 chr1 62104612 62104834 -135090598 - ID_B1 SINE B4 -4 220 3 1 1058 420 303 109 44 chr1 62104854 62104979 -135090453 + L1M3 LINE L1 4065 4194 -1946 1 1058 1165 71 0 0 chr1 62104979 62105120 -135090312 + B1_Mm SINE Alu 3 143 -4 1 1058 396 0 0 0 chr1 62105122 62105166 -135090266 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1058 420 303 109 44 chr1 62105166 62105358 -135090074 + L1M3 LINE L1 4195 4406 -1734 1 1058 543 78 0 0 chr1 62105872 62105949 -135089483 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 1 1058 200 375 117 0 chr1 62106070 62106198 -135089234 + L2b LINE L2 3233 3375 0 1 1058 339 25 0 0 chr1 62107488 62107528 -135087904 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1058 835 238 28 56 chr1 62109927 62110148 -135085284 + MTD LTR MaLR 12 210 -209 1 1058 1301 163 16 27 chr1 62110341 62110599 -135084833 + MTD LTR MaLR 164 418 -1 1 1058 1218 246 44 25 chr1 62111380 62111743 -135083689 - ORR1A4 LTR MaLR 0 374 5 1 1058 454 346 105 26 chr1 62111756 62112023 -135083409 - B4A SINE B4 0 292 5 1 1058 38 61 0 0 chr1 62112253 62112319 -135083113 + AT_rich Low_complexity Low_complexity 1 66 0 1 1058 2410 86 9 0 chr1 62112759 62113086 -135082346 - L1_Mus3 LINE L1 -4 6634 6305 1 1058 2035 136 31 13 chr1 62113157 62113545 -135081887 - ORR1A4-int LTR MaLR -851 1112 718 1 1058 1381 169 70 60 chr1 62113504 62113788 -135081644 - MT2B LTR ERVL -314 287 1 1 1058 3677 145 84 39 chr1 62113788 62114339 -135081093 - ORR1A4-int LTR MaLR -1380 583 1 1 1058 1238 162 206 39 chr1 62114339 62114621 -135080811 - ORR1A4 LTR MaLR 0 329 1 1 1058 21 36 0 0 chr1 62115291 62115319 -135080113 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 585 42 0 0 chr1 62116793 62116865 -135078567 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 1058 1136 57 0 7 chr1 62116865 62117006 -135078426 - B1_Mm SINE Alu -7 140 1 1 1058 426 201 71 63 chr1 62117920 62118147 -135077285 - Helitron3Na_Mam RC Helitron -2 484 201 1 1058 306 0 0 0 chr1 62118204 62118238 -135077194 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1058 732 52 0 0 chr1 62118238 62118334 -135077098 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 1058 317 225 25 0 chr1 62118393 62118473 -135076959 + CT-rich Low_complexity Low_complexity 4 85 0 1 1058 293 281 122 9 chr1 62120888 62121003 -135074429 + RMER12 LTR ERVK 726 853 -469 1 1058 392 226 5 22 chr1 62121009 62121236 -135074196 + (TATATG)n Simple_repeat Simple_repeat 1 222 0 1 1058 1411 219 27 50 chr1 62124244 62124682 -135070750 - Lx9 LINE L1 -1 7643 7216 1 1058 419 263 43 17 chr1 62124707 62124823 -135070609 + B3 SINE B2 94 212 -4 1 1058 225 214 136 19 chr1 62125983 62126145 -135069287 + MER33 DNA MER1_type 143 323 -1 1 1058 4375 85 25 3 chr1 62126661 62127311 -135068121 - Lx3_Mus LINE L1 -402 6607 5944 1 1058 3254 51 20 27 chr1 62127311 62127755 -135067677 + Lx3_Mus LINE L1 6569 7009 0 1 1059 261 0 0 0 chr1 62128763 62128792 -135066640 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1059 23 33 0 0 chr1 62128820 62128850 -135066582 + AT_rich Low_complexity Low_complexity 1 30 0 1 1059 1190 54 0 0 chr1 62129763 62129910 -135065522 + B1_Mm SINE Alu 1 147 0 1 1059 28 0 0 0 chr1 62132025 62132053 -135063379 + AT_rich Low_complexity Low_complexity 1 28 0 1 1059 509 63 42 0 chr1 62133521 62133616 -135061816 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1059 198 0 0 0 chr1 62133719 62133741 -135061691 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1059 507 319 88 20 chr1 62134018 62134475 -135060957 - L1MB3 LINE L1 -36 6147 5660 1 1059 2775 104 17 0 chr1 62134558 62134963 -135060469 + Lx3B LINE L1 6560 6971 -2 1 1059 603 62 0 0 chr1 62134997 62135077 -135060355 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1059 527 244 106 3 chr1 62135254 62135585 -135059847 - L1M4 LINE L1 -709 5469 5101 1 1059 401 283 135 30 chr1 62135931 62136367 -135059065 + L1MA7 LINE L1 5740 6234 -66 1 1059 240 184 20 0 chr1 62136419 62136468 -135058964 - L1M4 LINE L1 -1242 4904 4855 1 1059 588 290 69 5 chr1 62137072 62137290 -135058142 - Tigger5 DNA MER2_type -6 2400 2169 1 1059 339 298 43 0 chr1 62137293 62137387 -135058045 - Tigger5 DNA MER2_type -2153 253 156 1 1059 201 331 94 69 chr1 62137525 62137684 -135057748 - MIRb SINE MIR -99 169 7 1 1059 569 330 79 56 chr1 62137745 62138085 -135057347 + MARNA DNA Mariner 100 447 -139 1 1059 267 190 0 0 chr1 62138766 62138824 -135056608 + A-rich Low_complexity Low_complexity 1 58 0 1 1059 441 0 0 0 chr1 62139236 62139285 -135056147 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1059 979 88 7 0 chr1 62139285 62139415 -135056017 - B1_Mus1 SINE Alu -15 133 3 1 1059 261 0 0 0 chr1 62139485 62139514 -135055918 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1059 771 281 71 18 chr1 62140619 62141150 -135054282 - L1MA4 LINE L1 -275 6022 5427 1 1059 621 40 0 0 chr1 62141196 62141272 -135054160 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1059 210 118 0 0 chr1 62141294 62141328 -135054104 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1059 522 265 62 1 chr1 62141930 62142149 -135053283 - L1_Mur1 LINE L1 -805 5495 5237 1 1059 183 281 0 99 chr1 62143137 62143208 -135052224 - L2a LINE L2 -1 3425 3362 1 1059 183 80 0 0 chr1 62143859 62143884 -135051548 + (TTTTTA)n Simple_repeat Simple_repeat 5 29 0 1 1059 324 188 29 14 chr1 62144083 62144153 -135051279 + HAL1-3A_ME LINE L1 1973 2043 -815 1 1059 36311 32 0 0 chr1 62146515 62152250 -135043182 - L1Md_T LINE L1 0 6585 754 1 1059 604 253 7 7 chr1 62152323 62152470 -135042962 - B1_Mur4 SINE Alu -1 149 3 1 1059 246 255 0 0 chr1 62152513 62152564 -135042868 - ID SINE ID -151 73 23 1 1059 229 218 27 0 chr1 62152860 62152920 -135042512 + PB1D10 SINE Alu 37 100 -49 1 1059 202 115 39 0 chr1 62152946 62152998 -135042434 + GA-rich Low_complexity Low_complexity 1 54 0 1 1059 180 49 47 47 chr1 62153106 62153149 -135042283 + (TTTTTA)n Simple_repeat Simple_repeat 5 47 0 1 1059 211 167 0 122 chr1 62153238 62153320 -135042112 + T-rich Low_complexity Low_complexity 4 75 0 1 1059 2391 55 9 9 chr1 62153404 62153719 -135041713 - L1Md_F3 LINE L1 -3 6581 6267 1 1059 1688 25 0 0 chr1 62153719 62153920 -135041512 + L1Md_F3 LINE L1 6108 6308 -274 1 1059 23 33 0 0 chr1 62153920 62153950 -135041482 + AT_rich Low_complexity Low_complexity 1 30 0 1 1059 1483 273 59 22 chr1 62154156 62154702 -135040730 - Lx8 LINE L1 -3 7470 6905 1 1059 384 88 0 0 chr1 62156357 62156414 -135039018 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 1 1059 30 27 0 0 chr1 62156574 62156611 -135038821 + AT_rich Low_complexity Low_complexity 1 37 0 1 1059 838 278 208 69 chr1 62156813 62157266 -135038166 - RMER20B LTR ERVK -22 605 90 1 1059 5573 35 0 0 chr1 62158183 62158839 -135036593 + L1Md_T LINE L1 5926 6581 -1 1 1059 5170 34 7 0 chr1 62158969 62159580 -135035852 + L1Md_F3 LINE L1 5970 6584 0 1 1059 182 258 29 29 chr1 62160496 62160564 -135034868 - L3 LINE CR1 -849 3640 3573 1 1059 4066 59 12 0 chr1 62160805 62161316 -135034116 + L1_Mus1 LINE L1 6051 6567 0 1 1059 468 0 0 0 chr1 62163454 62163506 -135031926 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1059 309 109 0 0 chr1 62163523 62163569 -135031863 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1059 964 149 14 0 chr1 62164522 62164670 -135030762 - B1_Mur4 SINE Alu 0 150 1 1 1059 27 49 0 0 chr1 62164728 62164769 -135030663 + AT_rich Low_complexity Low_complexity 1 41 0 1 1059 2002 287 70 19 chr1 62165445 62165721 -135029711 - RCHARR1 DNA MER1_type -7 967 671 1 1059 1426 93 0 5 chr1 62165721 62165916 -135029516 - B2_Mm2 SINE B2 0 195 2 1 1059 2002 287 70 19 chr1 62165916 62166430 -135029002 - RCHARR1 DNA MER1_type -304 670 137 1 1059 403 348 63 34 chr1 62168377 62168645 -135026787 + MLT1H1 LTR MaLR 67 342 -213 1 1059 744 54 0 43 chr1 62168924 62169041 -135026391 - L1Md_F2 LINE L1 -8 6574 6463 1 1059 360 0 0 0 chr1 62169100 62169140 -135026292 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1059 1591 266 24 34 chr1 62169156 62169295 -135026137 - RMER15 LTR ERVL 0 575 442 1 1059 931 154 152 10 chr1 62169295 62169492 -135025940 - URR1A DNA MER1_type -1 225 1 1 1059 1591 266 24 34 chr1 62169492 62169765 -135025667 - RMER15 LTR ERVL -134 441 167 1 1059 308 246 84 42 chr1 62169746 62169865 -135025567 - RMER15 LTR ERVL -278 297 174 1 1059 534 303 154 43 chr1 62170018 62170414 -135025018 - L1M5 LINE L1 -749 5397 4958 2 1059 622 301 119 26 chr1 62170522 62170632 -135024800 - L1M5 LINE L1 -1984 4162 4048 2 1059 305 24 24 0 chr1 62170632 62170674 -135024758 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1059 622 301 119 26 chr1 62170674 62171354 -135024078 - L1M5 LINE L1 -2099 4047 3299 2 1059 281 316 131 78 chr1 62171789 62172057 -135023375 + B4 SINE B4 11 292 0 2 1059 334 128 10 41 chr1 62172059 62172157 -135023275 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1059 26 30 0 0 chr1 62173202 62173235 -135022197 + AT_rich Low_complexity Low_complexity 1 33 0 2 1059 3004 48 0 3 chr1 62173391 62173763 -135021669 - L1Md_F2 LINE L1 -10 6572 6202 2 1059 208 53 26 26 chr1 62174158 62174197 -135021235 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1059 228 67 0 0 chr1 62176494 62176524 -135018908 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1059 189 107 0 0 chr1 62176556 62176584 -135018848 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 1059 481 289 19 39 chr1 62177977 62178119 -135017313 + B4 SINE B4 72 213 -79 2 1059 258 32 0 0 chr1 62178119 62178150 -135017282 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1059 481 289 19 39 chr1 62178150 62178162 -135017270 + B4 SINE B4 214 223 -69 2 1059 192 77 0 0 chr1 62178354 62178380 -135017052 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1059 431 312 6 61 chr1 62179091 62179255 -135016177 + B3A SINE B2 21 175 -23 2 1059 352 317 33 8 chr1 62179959 62180080 -135015352 - B3A SINE B2 -21 177 54 2 1059 23 33 0 0 chr1 62182904 62182934 -135012498 + AT_rich Low_complexity Low_complexity 1 30 0 2 1059 651 26 0 0 chr1 62183019 62183096 -135012336 + (CTG)n Simple_repeat Simple_repeat 1 77 0 2 1059 1154 85 0 6 chr1 62183096 62183274 -135012158 + (TCC)n Simple_repeat Simple_repeat 2 178 0 2 1059 22 35 0 0 chr1 62184599 62184628 -135010804 + AT_rich Low_complexity Low_complexity 1 29 0 2 1059 275 308 0 0 chr1 62185051 62185116 -135010316 + MTEa LTR MaLR 1 65 -314 2 1059 343 198 32 75 chr1 62185110 62185203 -135010229 - MTEa LTR MaLR -288 91 3 2 1059 296 179 36 0 chr1 62185371 62185427 -135010005 + B1_Mus2 SINE Alu 2 59 -88 2 1059 229 200 32 48 chr1 62185372 62185435 -135009997 + ID_B1 SINE B4 84 145 -79 2 1059 699 224 24 0 chr1 62185436 62185669 -135009763 + (CAGG)n Simple_repeat Simple_repeat 1 238 0 2 1059 550 176 0 27 chr1 62185673 62185784 -135009648 + B1_Mur3 SINE Alu 42 149 0 2 1059 207 0 0 0 chr1 62185784 62185807 -135009625 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1059 393 198 0 0 chr1 62185916 62185997 -135009435 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2 1059 208 296 144 25 chr1 62186146 62186264 -135009168 + MIRb SINE MIR 25 156 -112 2 1059 202 320 60 0 chr1 62186333 62186433 -135008999 + MER5A DNA MER1_type 73 178 -11 2 1059 24 0 0 0 chr1 62187833 62187857 -135007575 + AT_rich Low_complexity Low_complexity 1 24 0 2 1059 1868 276 47 25 chr1 62188554 62189320 -135006112 + Lx7 LINE L1 5139 5925 -1771 2 1059 443 331 27 54 chr1 62189353 62189538 -135005894 - B3A SINE B2 -15 183 4 2 1059 273 309 26 13 chr1 62189958 62190109 -135005323 + L1M4 LINE L1 4630 4782 -1364 2 1059 253 203 83 60 chr1 62190401 62190423 -135005009 + ID_B1 SINE B4 139 222 0 2 1059 441 50 0 0 chr1 62190423 62190483 -135004949 + B1_Mus2 SINE Alu 88 147 0 2 1059 215 174 0 21 chr1 62190488 62190535 -135004897 + A-rich Low_complexity Low_complexity 2 47 0 2 1059 752 211 112 10 chr1 62190555 62190751 -135004681 + B3 SINE B2 1 216 0 2 1059 512 196 63 36 chr1 62190788 62190899 -135004533 + B1_Mur3 SINE Alu 1 114 -35 2 1059 411 194 28 0 chr1 62190908 62191016 -135004416 + CT-rich Low_complexity Low_complexity 2 112 0 2 1059 699 291 72 87 chr1 62191777 62192598 -135002834 - Lx9 LINE L1 -26 7618 6810 2 1059 649 272 6 65 chr1 62192942 62193111 -135002321 + ID_B1 SINE B4 45 203 -21 2 1059 994 136 6 11 chr1 62193116 62193295 -135002137 + GA-rich Low_complexity Low_complexity 1 178 0 2 1059 27 0 0 0 chr1 62193831 62193858 -135001574 + AT_rich Low_complexity Low_complexity 1 27 0 2 1059 22 35 0 0 chr1 62194043 62194072 -135001360 + AT_rich Low_complexity Low_complexity 1 29 0 2 1059 816 95 123 7 chr1 62194438 62194576 -135000856 - L1Md_F2 LINE L1 -1 6581 6428 2 1059 1607 54 0 39 chr1 62194578 62194809 -135000623 + L1Md_F2 LINE L1 6204 6425 -157 2 1059 403 274 182 53 chr1 62194832 62195079 -135000353 - Lx8 LINE L1 -372 7101 6823 2 1059 421 263 117 50 chr1 62195085 62195265 -135000167 + Lx8 LINE L1 7185 7376 -97 2 1059 239 363 39 17 chr1 62195792 62195946 -134999486 + MIRc SINE MIR 35 199 -69 2 1059 522 92 0 85 chr1 62196233 62196351 -134999081 - L1Md_F2 LINE L1 0 6582 6475 2 1059 554 304 67 8 chr1 62197164 62197419 -134998013 + L1_Rod LINE L1 2208 2477 -3370 2 1059 870 63 0 0 chr1 62197418 62197529 -134997903 + L1Md_F2 LINE L1 5476 5586 -297 2 1059 7540 54 28 2 chr1 62197529 62198488 -134996944 + L1Md_F2 LINE L1 5587 6570 -12 2 1059 610 192 16 0 chr1 62198488 62198501 -134996931 + L1_Mur3 LINE L1 5582 5595 -285 2 1059 406 0 37 0 chr1 62199335 62199389 -134996043 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1059 303 93 0 0 chr1 62200960 62201003 -134994429 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1059 36 40 0 0 chr1 62203234 62203284 -134992148 + AT_rich Low_complexity Low_complexity 1 50 0 2 1059 647 302 121 5 chr1 62205007 62205230 -134990202 + MER2 DNA MER2_type 91 339 -6 2 1059 198 103 0 0 chr1 62206677 62206706 -134988726 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1059 521 149 14 0 chr1 62206711 62206852 -134988580 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 2 1059 247 348 55 70 chr1 62209820 62210021 -134985411 - ORR1E LTR MaLR -109 250 53 2 1059 1460 48 0 21 chr1 62211208 62211399 -134984033 + B2_Mm2 SINE B2 1 187 -8 2 1059 402 243 194 11 chr1 62211511 62211686 -134983746 - MER2 DNA MER2_type -137 208 2 2 1059 281 303 20 0 chr1 62212730 62212829 -134982603 + PB1D10 SINE Alu 1 101 -16 2 1059 1266 225 34 55 chr1 62213140 62213621 -134981811 - Lx7 LINE L1 -1782 5914 5425 2 1059 2241 316 60 15 chr1 62213627 62214641 -134980791 + Lx8 LINE L1 6298 7357 -116 2 1059 36 53 0 0 chr1 62214944 62215001 -134980431 + AT_rich Low_complexity Low_complexity 1 57 0 2 1059 390 222 108 29 chr1 62216134 62216236 -134979196 + RSINE1 SINE B4 14 123 -42 2 1059 27 0 0 0 chr1 62216829 62216856 -134978576 + AT_rich Low_complexity Low_complexity 1 27 0 2 1059 291 227 13 13 chr1 62217120 62217196 -134978236 + MIR SINE MIR 171 246 -16 2 1059 184 54 26 51 chr1 62217794 62217833 -134977599 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1059 180 0 0 0 chr1 62218580 62218600 -134976832 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1059 534 244 49 0 chr1 62219024 62219147 -134976285 - MTD LTR MaLR 0 419 291 2 1059 275 246 176 56 chr1 62219173 62219199 -134976233 - MTD LTR MaLR -255 164 140 2 1059 519 31 0 0 chr1 62219199 62219264 -134976168 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1059 275 246 176 56 chr1 62219264 62219362 -134976070 - MTD LTR MaLR -280 139 25 2 1059 223 213 16 16 chr1 62219390 62219452 -134975980 + GA-rich Low_complexity Low_complexity 1 62 0 2 1059 210 308 12 37 chr1 62221136 62221217 -134974215 + MIRb SINE MIR 109 187 -81 2 1059 320 355 63 11 chr1 62221653 62221827 -134973605 + MER5A DNA MER1_type 1 183 -6 2 1059 252 0 0 0 chr1 62222462 62222490 -134972942 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1059 1888 143 123 22 chr1 62222737 62223095 -134972337 - ORR1B1 LTR MaLR 0 394 1 2 1059 296 48 24 0 chr1 62224882 62224924 -134970508 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1059 297 118 0 56 chr1 62225226 62225280 -134970152 + MTE2b LTR MaLR 1 51 -370 2 1059 232 274 82 12 chr1 62226196 62226281 -134969151 - MLT1H2 LTR MaLR 0 489 399 2 1059 468 265 25 25 chr1 62226314 62226434 -134968998 + MTE2b LTR MaLR 217 336 -43 2 1059 302 354 0 0 chr1 62226493 62226606 -134968826 - MLT1H LTR MaLR -380 169 57 2 1059 199 263 36 84 chr1 62226878 62226961 -134968471 + MIR3 SINE MIR 126 204 -4 2 1059 28 0 0 0 chr1 62227795 62227823 -134967609 + AT_rich Low_complexity Low_complexity 1 28 0 2 1059 21 0 0 0 chr1 62229608 62229629 -134965803 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 21 0 0 0 chr1 62230049 62230070 -134965362 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 228 329 12 12 chr1 62231812 62231898 -134963534 + MLT1H2 LTR MaLR 74 159 -330 2 1059 254 269 0 29 chr1 62233134 62233203 -134962229 + GA-rich Low_complexity Low_complexity 2 68 0 2 1059 2542 74 9 0 chr1 62233355 62233679 -134961753 - ORR1A2 LTR MaLR 0 327 1 2 1059 919 153 0 0 chr1 62234193 62234330 -134961102 + B1_Mur4 SINE Alu 1 137 -13 2 1059 393 22 0 0 chr1 62234332 62234378 -134961054 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1059 440 233 94 8 chr1 62234987 62235104 -134960328 + RSINE1 SINE B4 3 129 -36 2 1059 491 265 67 15 chr1 62235279 62235413 -134960019 - B1_Mur2 SINE Alu -2 147 7 2 1059 253 276 35 79 chr1 62235322 62235436 -134959996 - MT2B LTR ERVL -344 257 149 2 1059 323 194 89 79 chr1 62235723 62235824 -134959608 - PB1D7 SINE Alu 0 120 19 2 1059 183 100 0 0 chr1 62236001 62236031 -134959401 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 1059 431 149 83 147 chr1 62236438 62236690 -134958742 + Lx9 LINE L1 7409 7644 0 2 1059 237 188 15 30 chr1 62238118 62238184 -134957248 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1059 287 293 95 24 chr1 62238521 62238689 -134956743 + MER112 DNA MER1_type 2 181 -80 2 1059 189 154 0 0 chr1 62238693 62238732 -134956700 + (CTCG)n Simple_repeat Simple_repeat 2 40 0 2 1059 2969 60 54 15 chr1 62238894 62239286 -134956146 - MTB_Mm LTR MaLR 0 407 1 2 1059 1136 137 16 6 chr1 62239321 62239504 -134955928 + B2_Mm2 SINE B2 2 186 -9 2 1059 243 0 0 0 chr1 62239887 62239914 -134955518 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1059 216 0 0 0 chr1 62239914 62239937 -134955495 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1059 300 298 62 21 chr1 62240451 62240547 -134954885 + MER20 DNA MER1_type 1 100 -119 3 1059 233 326 9 115 chr1 62241433 62241546 -134953886 + PB1D7 SINE Alu 2 102 -18 3 1059 369 258 74 78 chr1 62241595 62241839 -134953593 + L1MA7 LINE L1 5940 6182 -109 3 1059 204 167 24 0 chr1 62241857 62241899 -134953533 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 1059 1079 83 7 0 chr1 62242099 62242244 -134953188 + B1_Mus2 SINE Alu 2 147 0 3 1059 243 0 0 0 chr1 62242245 62242272 -134953160 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1059 247 351 55 60 chr1 62242426 62242608 -134952824 + MIR SINE MIR 35 215 -47 3 1059 351 65 0 0 chr1 62243132 62243178 -134952254 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 3 1059 1178 56 0 0 chr1 62243198 62243340 -134952092 - B1_Mus1 SINE Alu -6 142 1 3 1059 218 122 19 75 chr1 62243548 62243601 -134951831 + A-rich Low_complexity Low_complexity 2 51 0 3 1059 216 200 0 0 chr1 62243672 62243722 -134951710 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1059 234 0 0 0 chr1 62243733 62243759 -134951673 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1059 206 170 0 21 chr1 62244546 62244594 -134950838 + (TTAAA)n Simple_repeat Simple_repeat 5 51 0 3 1059 1115 139 124 0 chr1 62246271 62246472 -134948960 + URR1A DNA MER1_type 1 226 0 3 1059 228 35 0 0 chr1 62248979 62249008 -134946424 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1059 208 146 55 0 chr1 62249590 62249645 -134945787 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 3 1059 30 27 0 0 chr1 62249676 62249713 -134945719 + AT_rich Low_complexity Low_complexity 1 37 0 3 1059 32 0 0 0 chr1 62249873 62249905 -134945527 + AT_rich Low_complexity Low_complexity 1 32 0 3 1059 1640 21 0 25 chr1 62253258 62253455 -134941977 - B2_Mm1a SINE B2 0 193 2 3 1059 271 208 130 0 chr1 62253659 62253736 -134941696 + MER20 DNA MER1_type 133 219 0 3 1059 265 312 0 48 chr1 62253737 62253821 -134941611 + Charlie24 DNA MER1_type 2365 2444 -6 3 1059 224 319 154 8 chr1 62253837 62253954 -134941478 + MIRb SINE MIR 22 155 -113 3 1059 477 240 38 47 chr1 62254072 62254221 -134941211 + B1F SINE Alu 7 149 0 3 1059 707 247 6 18 chr1 62254702 62254867 -134940565 - RSINE1 SINE B4 0 165 3 3 1059 252 0 0 0 chr1 62255281 62255309 -134940123 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1059 213 348 139 0 chr1 62255430 62255474 -134939958 + L3b LINE CR1 329 458 -23 3 1059 278 286 0 0 chr1 62255474 62255544 -134939888 + MIR3 SINE MIR 111 180 -28 3 1059 3276 51 0 5 chr1 62258575 62258973 -134936459 + MTA_Mm LTR MaLR 1 396 0 3 1060 1085 56 0 78 chr1 62259370 62259524 -134935908 + B1_Mus1 SINE Alu 2 143 -5 3 1060 225 0 0 0 chr1 62259530 62259555 -134935877 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1060 383 0 21 0 chr1 62263173 62263220 -134932212 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1060 364 270 81 52 chr1 62263796 62263968 -134931464 - L1ME4a LINE L1 0 6124 5948 3 1060 203 260 40 0 chr1 62264277 62264327 -134931105 - MIRb SINE MIR -13 255 204 3 1060 293 333 94 0 chr1 62264336 62264453 -134930979 - MIRc SINE MIR -98 170 43 3 1060 746 178 2 1 chr1 62266077 62266205 -134929227 + B1_Mus1 SINE Alu 19 146 -2 3 1060 306 0 0 0 chr1 62266210 62266244 -134929188 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1060 751 224 22 4 chr1 62266450 62266644 -134928788 + B3 SINE B2 3 198 0 3 1060 237 317 39 11 chr1 62266670 62266781 -134928651 - Cheshire DNA MER1_type -2131 289 173 3 1060 35438 29 2 7 chr1 62266783 62271982 -134923450 + L1Md_T LINE L1 423 5586 -297 3 1060 8248 38 0 2 chr1 62271982 62272968 -134922464 + L1Md_T LINE L1 5587 6570 -12 3 1060 441 0 0 0 chr1 62273192 62273241 -134922191 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1060 1010 285 66 24 chr1 62274490 62274529 -134920903 - MLT2B4 LTR ERVL -5 551 506 3 1060 648 0 0 0 chr1 62274529 62274601 -134920831 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3 1060 489 76 0 0 chr1 62274607 62274673 -134920759 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1060 1010 285 66 24 chr1 62274673 62275003 -134920429 - MLT2B4 LTR ERVL -55 501 159 3 1060 361 356 8 0 chr1 62275010 62275128 -134920304 + B3 SINE B2 2 120 -96 3 1060 392 291 21 21 chr1 62275599 62275743 -134919689 - B1_Mur3 SINE Alu -3 146 3 3 1060 295 299 0 0 chr1 62275764 62275841 -134919591 - ID4 SINE ID 0 83 7 3 1060 1025 320 53 54 chr1 62278003 62278888 -134916544 + Lx6 LINE L1 4665 5548 -332 3 1060 2724 206 64 11 chr1 62278887 62279512 -134915920 + Lx9 LINE L1 6987 7644 0 3 1060 565 274 66 48 chr1 62279554 62279909 -134915523 + Lx6 LINE L1 5589 5925 -1771 3 1060 285 51 0 0 chr1 62280164 62280203 -134915229 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1060 1128 198 93 4 chr1 62281184 62281432 -134914000 + MTD LTR MaLR 1 270 -149 3 1060 316 211 13 38 chr1 62281450 62281529 -134913903 + MTD LTR MaLR 335 411 -8 3 1060 289 292 67 152 chr1 62283549 62283819 -134911613 - MIR SINE MIR -19 249 3 3 1060 2260 152 28 15 chr1 62284856 62285256 -134910176 + Lx3B LINE L1 6566 6970 -3 3 1060 227 256 0 35 chr1 62285742 62285827 -134909605 + (CAAA)n Simple_repeat Simple_repeat 3 84 0 3 1060 601 294 215 24 chr1 62287011 62287304 -134908128 - Lx8 LINE L1 -295 7178 6830 3 1060 777 104 7 15 chr1 62287516 62287653 -134907779 + (GAAA)n Simple_repeat Simple_repeat 3 138 0 3 1060 1179 35 0 0 chr1 62287726 62287867 -134907565 + B1_Mus1 SINE Alu 1 141 -7 3 1060 263 98 0 38 chr1 62287868 62287921 -134907511 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 3 1060 237 178 0 0 chr1 62288192 62288237 -134907195 + (TATG)n Simple_repeat Simple_repeat 2 46 0 3 1060 293 269 0 15 chr1 62288356 62288424 -134907008 + ID4_ SINE ID 2 68 -15 3 1060 278 290 18 91 chr1 62288603 62288713 -134906719 + PB1D10 SINE Alu 3 104 -13 3 1060 686 297 46 30 chr1 62289351 62289623 -134905809 + B4A SINE B4 17 291 -1 3 1060 203 0 0 36 chr1 62289703 62289731 -134905701 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1060 24 96 0 0 chr1 62289784 62289857 -134905575 + AT_rich Low_complexity Low_complexity 1 73 0 3 1060 186 341 24 0 chr1 62291334 62291416 -134904016 + L3b LINE CR1 218 301 -181 3 1060 367 174 0 17 chr1 62292440 62292557 -134902875 + (TTTA)n Simple_repeat Simple_repeat 3 117 0 3 1060 282 205 26 0 chr1 62293087 62293165 -134902267 + L1MA6 LINE L1 6120 6199 -101 3 1060 495 325 45 38 chr1 62293343 62293500 -134901932 + RSINE1 SINE B4 4 161 -4 3 1060 452 173 13 8 chr1 62293510 62293594 -134901838 - ORR1B1 LTR MaLR 0 421 292 3 1060 1085 44 7 0 chr1 62293610 62293746 -134901686 - B1_Mm SINE Alu -1 146 10 3 1060 971 176 41 4 chr1 62293743 62293987 -134901445 - ORR1B1 LTR MaLR -69 325 1 3 1060 184 340 133 10 chr1 62294434 62294532 -134900900 + L3 LINE CR1 3998 4107 -382 3 1060 1293 185 14 0 chr1 62294705 62294927 -134900505 - URR1B DNA MER1_type 0 225 1 3 1060 266 336 60 26 chr1 62295132 62295248 -134900184 - B1F SINE Alu -29 120 1 3 1060 751 207 0 14 chr1 62295770 62295912 -134899520 - B1_Mur2 SINE Alu -5 144 5 3 1060 26 64 0 0 chr1 62297454 62297501 -134897931 + AT_rich Low_complexity Low_complexity 1 47 0 3 1060 570 67 0 0 chr1 62298932 62299007 -134896425 + (TCTCCC)n Simple_repeat Simple_repeat 3 77 0 3 1060 282 95 0 0 chr1 62299012 62299054 -134896378 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1060 704 42 0 10 chr1 62299336 62299433 -134895999 + (GA)n Simple_repeat Simple_repeat 2 97 0 3 1060 302 313 21 84 chr1 62299473 62299616 -134895816 - ORR1E LTR MaLR -224 135 2 3 1060 340 306 0 0 chr1 62301082 62301167 -134894265 + 7SK RNA RNA 10 94 -237 3 1060 221 0 0 33 chr1 62301364 62301394 -134894038 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1060 504 117 0 0 chr1 62301415 62301492 -134893940 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 3 1060 450 204 0 0 chr1 62301823 62301921 -134893511 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 1060 3250 41 10 0 chr1 62303219 62303611 -134891821 - MTA_Mm LTR MaLR 0 396 1 3 1060 487 267 41 49 chr1 62303650 62303772 -134891660 + RSINE1 SINE B4 15 135 -30 3 1060 185 108 27 0 chr1 62303778 62303815 -134891617 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1060 490 244 72 12 chr1 62303945 62304111 -134891321 - Lx5 LINE L1 0 7050 6875 3 1060 1810 217 16 14 chr1 62304086 62304459 -134890973 + Lx5 LINE L1 6524 6878 -172 3 1060 424 176 10 10 chr1 62304557 62304660 -134890772 + (TATG)n Simple_repeat Simple_repeat 4 106 0 3 1060 453 319 7 47 chr1 62304694 62304842 -134890590 - RSINE1 SINE B4 -22 143 2 3 1060 298 247 103 120 chr1 62306239 62306414 -134889018 - MLT1L LTR MaLR -123 487 254 3 1060 202 289 0 0 chr1 62307123 62307175 -134888257 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1060 24 32 0 0 chr1 62307370 62307401 -134888031 + AT_rich Low_complexity Low_complexity 1 31 0 3 1060 265 344 56 19 chr1 62308373 62308533 -134886899 + L3 LINE CR1 3586 3751 -738 3 1060 318 381 60 26 chr1 62308552 62308784 -134886648 + L2 LINE L2 2749 2988 -431 3 1060 182 317 0 0 chr1 62308935 62308976 -134886456 - L2a LINE L2 -8 3367 3327 3 1060 325 376 87 45 chr1 62309055 62309534 -134885898 - L2a LINE L2 -201 3225 2721 3 1060 471 282 27 40 chr1 62309685 62309833 -134885599 + L3 LINE CR1 3764 3909 -580 3 1060 212 337 154 29 chr1 62310238 62310342 -134885090 + B4A SINE B4 6 122 -170 3 1060 200 291 142 25 chr1 62310537 62310657 -134884775 + MIRb SINE MIR 95 228 -40 3 1060 1237 170 4 55 chr1 62310969 62311206 -134884226 + URR1B DNA MER1_type 1 225 0 3 1060 21 36 0 0 chr1 62312195 62312223 -134883209 + AT_rich Low_complexity Low_complexity 1 28 0 3 1060 446 309 184 21 chr1 62312295 62312860 -134882572 + L1MEc LINE L1 289 945 -5455 3 1060 292 240 10 10 chr1 62313492 62313589 -134881843 + L1MEc LINE L1 1653 1749 -4651 3 1060 585 94 0 0 chr1 62313595 62313680 -134881752 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1060 2474 149 26 2 chr1 62313700 62314117 -134881315 - Lx2B LINE L1 -4 6996 6570 4 1060 546 299 102 46 chr1 62314195 62314829 -134880603 + L1MEc LINE L1 3381 4060 -2259 3 1060 353 149 15 0 chr1 62315055 62315122 -134880310 + GA-rich Low_complexity Low_complexity 2 69 0 4 1060 336 243 58 0 chr1 62315122 62315225 -134880207 + Lx9 LINE L1 7536 7644 0 4 1060 351 0 0 0 chr1 62315894 62315933 -134879499 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1060 576 0 0 0 chr1 62315933 62315997 -134879435 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1060 21 57 0 0 chr1 62316537 62316572 -134878860 + AT_rich Low_complexity Low_complexity 1 35 0 4 1060 452 209 26 19 chr1 62317358 62317514 -134877918 + (TATATG)n Simple_repeat Simple_repeat 6 162 0 4 1060 1494 147 116 18 chr1 62320659 62320943 -134874489 - ORR1A4 LTR MaLR 0 329 18 4 1060 27 62 0 0 chr1 62320954 62321002 -134874430 + AT_rich Low_complexity Low_complexity 1 48 0 4 1060 27 29 0 0 chr1 62321039 62321073 -134874359 + AT_rich Low_complexity Low_complexity 1 34 0 4 1060 761 51 34 0 chr1 62321073 62321190 -134874242 - L1Md_F3 LINE L1 -2 6582 6462 4 1060 419 111 0 27 chr1 62321187 62321261 -134874171 + L1Md_F2 LINE L1 6499 6570 -12 4 1060 302 306 49 0 chr1 62321307 62321471 -134873961 - L1MEc LINE L1 -2475 3844 3670 4 1060 536 310 93 0 chr1 62321808 62322076 -134873356 - L1MEc LINE L1 -6073 327 35 4 1060 1076 182 0 0 chr1 62324447 62324628 -134870804 + URR1A DNA MER1_type 44 224 -2 4 1060 393 204 22 0 chr1 62324791 62324928 -134870504 + (TAGA)n Simple_repeat Simple_repeat 3 142 0 4 1060 495 48 0 0 chr1 62325911 62325973 -134869459 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1060 393 248 0 0 chr1 62325973 62326067 -134869365 - Lx9 LINE L1 -167 7477 7384 4 1060 24 0 0 0 chr1 62327075 62327099 -134868333 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 1199 255 21 3 chr1 62327237 62327528 -134867904 + MERVL_2A-int LTR ERVL 1999 2294 -3467 4 1060 39 0 0 0 chr1 62328007 62328046 -134867386 + AT_rich Low_complexity Low_complexity 1 39 0 4 1060 514 288 29 0 chr1 62328049 62328188 -134867244 + B1F2 SINE Alu 5 147 -2 4 1060 580 116 0 59 chr1 62328681 62328782 -134866650 + B1_Mus2 SINE Alu 53 147 0 4 1060 324 0 0 0 chr1 62328783 62328819 -134866613 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1060 24 32 0 0 chr1 62328989 62329020 -134866412 + AT_rich Low_complexity Low_complexity 1 31 0 4 1060 1127 274 56 32 chr1 62329050 62329390 -134866042 - ORR1E LTR MaLR 0 359 12 4 1060 261 339 90 6 chr1 62330392 62330558 -134864874 - L2 LINE L2 -2822 597 418 4 1060 358 20 39 0 chr1 62331229 62331280 -134864152 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1060 343 299 56 0 chr1 62331948 62332055 -134863377 + PB1D7 SINE Alu 1 113 -7 4 1060 24 0 0 0 chr1 62332102 62332126 -134863306 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 612 338 124 34 chr1 62334311 62334691 -134860741 - MER21B LTR ERV1 -264 599 186 4 1060 483 18 0 0 chr1 62334927 62334983 -134860449 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1060 627 296 88 35 chr1 62335839 62336067 -134859365 + B4A SINE B4 1 240 -52 4 1060 189 0 0 0 chr1 62336092 62336113 -134859319 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 4 1060 1994 195 64 141 chr1 62336423 62336496 -134858936 - RLTR20B1 LTR ERVK 0 563 501 4 1060 2116 159 0 3 chr1 62336496 62336843 -134858589 - ORR1A1 LTR MaLR 0 346 1 4 1060 1994 195 64 141 chr1 62336843 62337377 -134858055 - RLTR20B1 LTR ERVK -63 500 3 4 1060 185 310 17 0 chr1 62337996 62338054 -134857378 + L2a LINE L2 3127 3185 -241 4 1060 303 314 65 36 chr1 62338112 62338251 -134857181 - RSINE1 SINE B4 -19 146 4 4 1060 323 346 68 32 chr1 62338251 62338472 -134856960 - L1MEg LINE L1 -3861 2147 1919 4 1060 549 304 107 83 chr1 62338607 62339224 -134856208 - L1MEg LINE L1 -4430 1654 1023 4 1060 225 0 0 0 chr1 62339571 62339596 -134855836 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1060 477 0 0 0 chr1 62340865 62340918 -134854514 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1060 686 267 10 113 chr1 62340929 62341001 -134854431 - B4 SINE B4 -20 272 211 4 1060 1938 117 58 61 chr1 62341001 62341329 -134854103 - ORR1A2 LTR MaLR 0 327 1 4 1060 686 267 10 113 chr1 62341329 62341459 -134853973 - B4 SINE B4 -82 210 91 4 1060 33972 33 1 0 chr1 62341970 62347886 -134847546 + L1Md_T LINE L1 1 5589 -297 4 1060 9023 6 0 0 chr1 62347886 62348916 -134846516 + L1Md_T LINE L1 5590 6585 0 4 1060 909 140 0 0 chr1 62349835 62349985 -134845447 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 4 1060 378 0 0 0 chr1 62349985 62350027 -134845405 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 4 1060 301 255 123 65 chr1 62350037 62350192 -134845240 + L1MD LINE L1 4967 5130 -1016 4 1060 609 131 0 0 chr1 62350278 62350385 -134845047 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 1060 323 342 0 44 chr1 62350673 62350692 -134844740 - ID_B1 SINE B4 -35 189 82 4 1060 365 286 0 32 chr1 62350692 62350786 -134844646 - PB1D10 SINE Alu -26 91 1 4 1060 499 229 67 50 chr1 62350927 62351106 -134844326 - B3A SINE B2 -16 182 1 4 1060 445 329 0 20 chr1 62351715 62351867 -134843565 - B1F2 SINE Alu 0 149 1 4 1060 677 246 17 9 chr1 62352679 62352860 -134842572 - B3 SINE B2 -3 192 1 4 1060 2773 72 52 10 chr1 62353687 62354091 -134841341 - BGLII LTR ERVK 0 421 1 4 1060 1263 78 0 0 chr1 62355004 62355247 -134840185 + (TG)n Simple_repeat Simple_repeat 1 243 0 4 1060 214 342 102 35 chr1 62355398 62355595 -134839837 - L2c LINE L2 -153 3234 3025 4 1060 24 0 0 0 chr1 62355776 62355800 -134839632 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 22 35 0 0 chr1 62357319 62357348 -134838084 + AT_rich Low_complexity Low_complexity 1 29 0 4 1060 1936 145 28 6 chr1 62357572 62357891 -134837541 + Lx4A LINE L1 6733 7058 0 4 1060 639 324 52 72 chr1 62358429 62358778 -134836654 - ORR1E LTR MaLR -6 353 12 4 1060 306 0 0 0 chr1 62358927 62358961 -134836471 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 1060 563 265 12 18 chr1 62361403 62361568 -134833864 + RSINE1 SINE B4 2 165 0 4 1060 371 208 0 8 chr1 62363449 62363570 -134831862 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 1060 259 359 118 0 chr1 62364154 62364295 -134831137 + MIR SINE MIR 13 174 -94 4 1060 189 382 30 60 chr1 62364463 62364620 -134830812 - L2b LINE L2 -4 3383 3204 4 1060 308 364 10 0 chr1 62364643 62364742 -134830690 + MIR SINE MIR 24 123 -139 4 1060 337 354 82 14 chr1 62365255 62365536 -134829896 - L2b LINE L2 -1168 2251 1952 4 1060 912 36 0 0 chr1 62366436 62366548 -134828884 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 4 1060 7857 38 1 1 chr1 62366590 62368104 -134827328 - L1Md_F2 LINE L1 -3 6579 5065 4 1060 180 0 0 0 chr1 62368104 62368124 -134827308 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1060 1045 31 0 0 chr1 62368124 62368251 -134827181 - B1_Mm SINE Alu 0 147 21 4 1060 352 296 28 61 chr1 62371069 62371281 -134824151 + L1P5 LINE L1 5450 5654 -502 4 1060 279 257 64 0 chr1 62371780 62371889 -134823543 - L1MB2 LINE L1 -3 6168 6053 4 1060 216 232 240 10 chr1 62374058 62374158 -134821274 + MIR SINE MIR 113 235 -27 4 1060 618 288 113 18 chr1 62377154 62377536 -134817896 + Lx8 LINE L1 2269 2686 -3194 4 1060 670 280 51 42 chr1 62377514 62377962 -134817470 + L1M2 LINE L1 2875 3326 -2817 4 1060 24 0 0 0 chr1 62377985 62378009 -134817423 + AT_rich Low_complexity Low_complexity 1 24 0 4 1060 1467 312 81 40 chr1 62378011 62378696 -134816736 + Lx8 LINE L1 4578 5295 -585 4 1060 270 21 42 21 chr1 62378696 62378744 -134816688 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1060 1467 315 79 40 chr1 62378744 62379335 -134816097 + Lx8 LINE L1 5296 5906 -1567 4 1060 453 19 0 0 chr1 62380199 62380253 -134815179 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1060 528 320 41 36 chr1 62380507 62380718 -134814714 + MLT1A0 LTR MaLR 172 375 -15 4 1060 1100 299 93 11 chr1 62381272 62381736 -134813696 + Lx8 LINE L1 6933 7434 -39 4 1060 384 22 0 0 chr1 62382703 62382748 -134812684 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 1060 183 80 0 0 chr1 62382901 62382926 -134812506 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 4 1060 195 105 17 34 chr1 62383048 62383107 -134812325 + A-rich Low_complexity Low_complexity 3 60 0 4 1060 24 32 0 0 chr1 62384797 62384828 -134810604 + AT_rich Low_complexity Low_complexity 1 31 0 4 1060 5347 35 6 0 chr1 62385561 62386196 -134809236 - L1Md_F2 LINE L1 -12 6570 5932 4 1060 338 273 18 26 chr1 62386482 62386595 -134808837 - Lx8 LINE L1 -339 7134 7023 4 1060 361 195 20 3 chr1 62390010 62390025 -134805407 + B1_Mur4 SINE Alu 11 46 -74 4 1060 233 222 36 36 chr1 62390025 62390081 -134805351 + MT2B LTR ERVL 180 235 -366 4 1060 361 195 20 3 chr1 62390081 62390102 -134805330 + B1_Mur4 SINE Alu 47 105 -15 4 1061 311 277 55 63 chr1 62390294 62390421 -134805011 - MIR3 SINE MIR -73 135 10 4 1061 264 350 0 0 chr1 62391562 62391662 -134803770 + GA-rich Low_complexity Low_complexity 5 104 0 4 1061 342 0 0 0 chr1 62393353 62393391 -134802041 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1061 428 162 81 0 chr1 62393533 62393607 -134801825 - B1_Mur4 SINE Alu -13 137 58 4 1061 1256 217 123 9 chr1 62393605 62393921 -134801511 - ORR1D1 LTR MaLR -22 352 1 4 1061 361 335 121 10 chr1 62394404 62394603 -134800829 + MLT1D LTR MaLR 116 336 -169 4 1061 251 219 31 0 chr1 62394632 62394696 -134800736 + MLT1D LTR MaLR 440 505 0 4 1061 216 86 0 0 chr1 62396814 62396849 -134798583 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 4 1061 709 313 31 21 chr1 62396946 62397233 -134798199 - B4A SINE B4 0 292 3 4 1061 259 321 115 36 chr1 62397445 62397584 -134797848 - L2a LINE L2 -1 3425 3276 4 1061 436 250 77 31 chr1 62398839 62399033 -134796399 - L1MA8 LINE L1 -248 6043 5841 4 1061 1844 188 115 25 chr1 62399035 62399477 -134795955 - RMER5 LTR ERV1 0 534 53 4 1061 402 21 0 0 chr1 62399501 62399548 -134795884 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1061 357 43 0 0 chr1 62399550 62399597 -134795835 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1061 738 287 7 25 chr1 62399604 62399890 -134795542 - L1MA8 LINE L1 -506 5785 5505 4 1061 485 279 87 14 chr1 62401262 62401400 -134794032 + B3A SINE B2 5 152 -46 4 1061 315 0 0 0 chr1 62401401 62401436 -134793996 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1061 293 343 181 15 chr1 62403798 62404068 -134791364 + ORR1E LTR MaLR 39 373 -6 5 1061 225 0 0 0 chr1 62404727 62404752 -134790680 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1061 303 243 43 51 chr1 62405082 62405199 -134790233 + L3b LINE CR1 161 276 -206 5 1061 21 0 0 0 chr1 62406944 62406965 -134788467 + AT_rich Low_complexity Low_complexity 1 21 0 5 1061 378 0 0 0 chr1 62407394 62407436 -134787996 + (TAA)n Simple_repeat Simple_repeat 2 43 0 5 1061 418 199 58 44 chr1 62409671 62409808 -134785624 + Lx7 LINE L1 7554 7692 -4 5 1061 252 143 0 0 chr1 62409900 62409942 -134785490 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 5 1061 274 40 19 57 chr1 62410884 62410937 -134784495 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1061 1037 54 0 0 chr1 62410939 62411069 -134784363 - B1_Mm SINE Alu 0 147 18 5 1061 245 257 33 16 chr1 62411424 62411616 -134783816 + (TG)n Simple_repeat Simple_repeat 1 195 0 5 1061 424 219 47 9 chr1 62412457 62412563 -134782869 + PB1D10 SINE Alu 2 111 -6 5 1061 207 0 0 0 chr1 62412741 62412764 -134782668 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 5 1061 1679 210 3 3 chr1 62412764 62413074 -134782358 - Lx5 LINE L1 -14 7036 6727 5 1061 1848 85 3 63 chr1 62413135 62413435 -134781997 + L1Md_F2 LINE L1 6301 6582 0 5 1061 877 123 43 0 chr1 62413575 62413713 -134781719 + B1_Mus1 SINE Alu 4 147 -1 5 1061 183 156 0 0 chr1 62414026 62414058 -134781374 + (TATAG)n Simple_repeat Simple_repeat 2 33 0 5 1061 25 51 0 0 chr1 62414169 62414208 -134781224 + AT_rich Low_complexity Low_complexity 1 39 0 5 1061 218 258 32 0 chr1 62416334 62416396 -134779036 - MIR SINE MIR -93 169 106 5 1061 22 35 0 0 chr1 62417444 62417473 -134777959 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 377 216 39 0 chr1 62417514 62417616 -134777816 + L1MA5 LINE L1 6195 6300 0 5 1061 352 308 39 0 chr1 62417962 62418066 -134777366 - L2c LINE L2 0 3387 3280 5 1061 297 327 32 13 chr1 62419214 62419372 -134776060 + (CATATA)n Simple_repeat Simple_repeat 4 164 0 5 1061 263 259 40 86 chr1 62419700 62419852 -134775580 + B1F SINE Alu 5 149 0 5 1061 255 180 56 0 chr1 62419864 62419953 -134775479 + GA-rich Low_complexity Low_complexity 4 97 0 5 1061 220 179 0 0 chr1 62419982 62420021 -134775411 + ID4 SINE ID 32 70 -13 5 1061 327 267 11 32 chr1 62420556 62420649 -134774783 + GA-rich Low_complexity Low_complexity 2 92 0 5 1061 393 335 105 4 chr1 62420702 62420969 -134774463 + MER33 DNA MER1_type 11 304 -20 5 1061 231 36 0 0 chr1 62421599 62421627 -134773805 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1061 246 319 0 0 chr1 62422487 62422556 -134772876 + CT-rich Low_complexity Low_complexity 1 69 0 5 1061 318 195 0 0 chr1 62424048 62424135 -134771297 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1061 321 47 0 0 chr1 62424417 62424460 -134770972 + (TTG)n Simple_repeat Simple_repeat 3 45 0 5 1061 1419 271 286 11 chr1 62424479 62425194 -134770238 - Lx8 LINE L1 -174 7299 6387 5 1061 817 315 18 9 chr1 62425212 62425433 -134769999 - B4A SINE B4 -65 227 5 5 1061 21 0 0 0 chr1 62425886 62425907 -134769525 + AT_rich Low_complexity Low_complexity 1 21 0 5 1061 216 0 0 0 chr1 62426079 62426103 -134769329 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 5 1061 26 0 0 0 chr1 62427219 62427245 -134768187 + AT_rich Low_complexity Low_complexity 1 26 0 5 1061 183 291 118 59 chr1 62427617 62427752 -134767680 + L3 LINE CR1 3804 3946 -543 5 1061 561 30 0 0 chr1 62429035 62429102 -134766330 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 5 1061 234 242 290 0 chr1 62430500 62430562 -134764870 - RSINE1 SINE B4 -85 80 1 5 1061 242 217 54 108 chr1 62431101 62431194 -134764238 - LTR48B LTR ERV1 -540 104 17 5 1061 890 182 18 18 chr1 62431224 62431392 -134764040 - B2_Mm2 SINE B2 -27 168 1 5 1061 324 70 0 0 chr1 62431450 62431493 -134763939 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1061 241 296 28 0 chr1 62431494 62431565 -134763867 + CT-rich Low_complexity Low_complexity 2 74 0 5 1061 370 330 62 93 chr1 62431687 62432171 -134763261 + HAL1 LINE L1 651 1119 -1388 5 1061 401 320 44 71 chr1 62432268 62432520 -134762912 + HAL1 LINE L1 1367 1611 -896 5 1061 1577 203 116 13 chr1 62432840 62433220 -134762212 - MTD LTR MaLR 0 419 1 5 1061 516 106 0 0 chr1 62433389 62433483 -134761949 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 1061 235 327 71 32 chr1 62434295 62434450 -134760982 - L3 LINE CR1 -619 3870 3710 5 1061 868 162 14 0 chr1 62435772 62435920 -134759512 + B1_Mur4 SINE Alu 1 150 0 5 1061 668 98 0 10 chr1 62435950 62436053 -134759379 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 5 1061 396 0 0 0 chr1 62437253 62437297 -134758135 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1061 29 0 0 0 chr1 62438148 62438177 -134757255 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 1245 172 5 23 chr1 62438237 62438457 -134756975 + B3 SINE B2 1 216 0 5 1061 28 0 0 0 chr1 62440875 62440903 -134754529 + AT_rich Low_complexity Low_complexity 1 28 0 5 1061 233 406 26 6 chr1 62441665 62441821 -134753611 - MIRc SINE MIR -6 262 104 5 1061 2198 109 91 38 chr1 62442280 62442652 -134752780 - Lx LINE L1 -1 6653 6262 5 1061 260 111 0 22 chr1 62442678 62442724 -134752708 + (TAA)n Simple_repeat Simple_repeat 3 47 0 5 1061 214 250 278 0 chr1 62443357 62443429 -134752003 + B1F SINE Alu 3 94 -55 5 1061 295 241 86 76 chr1 62443461 62443580 -134751852 + B4A SINE B4 2 121 -171 5 1061 415 305 39 39 chr1 62443529 62443591 -134751841 + CYRA11_Mm Unknown Y-chromosome 109 170 -447 5 1061 943 189 0 6 chr1 62443591 62443761 -134751671 - URR1A DNA MER1_type 0 226 58 5 1061 277 298 58 92 chr1 62443789 62443963 -134751469 + B4 SINE B4 125 292 0 5 1061 189 102 0 75 chr1 62444004 62444057 -134751375 + A-rich Low_complexity Low_complexity 1 49 0 5 1061 457 312 48 82 chr1 62444834 62445190 -134750242 - L3 LINE CR1 -1494 2995 2652 5 1061 1836 111 77 89 chr1 62445905 62446159 -134749273 - RMER17C LTR ERVK 0 410 185 5 1061 1233 101 0 0 chr1 62446159 62446338 -134749094 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1061 1836 111 77 89 chr1 62446338 62446498 -134748934 - RMER17C LTR ERVK -226 184 1 5 1061 295 235 29 29 chr1 62446671 62446741 -134748691 - ID4 SINE ID -3 80 11 5 1061 23 0 0 0 chr1 62447080 62447103 -134748329 + AT_rich Low_complexity Low_complexity 1 23 0 5 1061 258 330 22 11 chr1 62447530 62447622 -134747810 - RSINE1 SINE B4 -70 95 3 5 1061 271 314 55 55 chr1 62447797 62447962 -134747470 + MIR SINE MIR 4 168 -94 5 1061 283 311 131 9 chr1 62447986 62448093 -134747339 - PB1D9 SINE Alu 0 120 1 5 1061 230 280 20 0 chr1 62448049 62448099 -134747333 - ID_B1 SINE B4 -99 125 75 5 1061 1363 72 22 11 chr1 62448246 62448430 -134747002 - B2_Mm2 SINE B2 -7 188 3 5 1061 805 188 64 50 chr1 62448467 62448669 -134746763 - B3 SINE B2 -11 205 1 5 1061 845 46 0 0 chr1 62448747 62448856 -134746576 - L1Md_T LINE L1 -506 6076 5968 5 1061 4187 29 0 0 chr1 62448856 62449338 -134746094 + L1Md_T LINE L1 6101 6582 0 5 1061 23 33 0 0 chr1 62450521 62450551 -134744881 + AT_rich Low_complexity Low_complexity 1 30 0 5 1061 22 35 0 0 chr1 62452156 62452185 -134743247 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 296 127 18 0 chr1 62453806 62453861 -134741571 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 5 1061 699 247 18 6 chr1 62455071 62455238 -134740194 + L3b LINE CR1 225 393 -89 5 1061 25 0 0 0 chr1 62455530 62455555 -134739877 + AT_rich Low_complexity Low_complexity 1 25 0 5 1061 270 0 0 0 chr1 62456144 62456174 -134739258 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1061 243 345 138 55 chr1 62456179 62456397 -134739035 - B4A SINE B4 -56 236 1 5 1061 416 296 129 10 chr1 62457603 62458145 -134737287 + L1MA6 LINE L1 5642 6253 -38 5 1061 331 278 0 0 chr1 62459529 62459601 -134735831 - ID4_ SINE ID -8 75 4 5 1061 704 263 72 47 chr1 62460201 62460537 -134734895 - RLTR16 LTR ERVK -257 435 24 5 1061 398 292 45 20 chr1 62460574 62460773 -134734659 - L1MB8 LINE L1 -129 6049 5846 5 1061 283 134 61 0 chr1 62460810 62460892 -134734540 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1061 1208 54 7 0 chr1 62460902 62461049 -134734383 + B1_Mus1 SINE Alu 1 148 0 5 1061 345 212 133 17 chr1 62461090 62461210 -134734222 - L1MB8 LINE L1 -340 5838 5705 5 1061 3054 87 67 2 chr1 62461213 62461661 -134733771 + RLTR44C LTR ERVK 1 477 -25 5 1061 550 302 29 18 chr1 62461695 62462035 -134733397 - L1MB8 LINE L1 -503 5675 5332 5 1061 21 36 0 0 chr1 62462280 62462308 -134733124 + AT_rich Low_complexity Low_complexity 1 28 0 5 1061 350 320 67 6 chr1 62463420 62463599 -134731833 - MIR SINE MIR -29 233 44 5 1061 491 331 121 24 chr1 62466397 62466978 -134728454 - L1MC4a LINE L1 -1149 6846 6210 5 1061 875 304 32 39 chr1 62469475 62469759 -134725673 - MamSINE1 SINE tRNA -7 283 2 5 1061 1499 21 25 51 chr1 62470042 62470238 -134725194 + B2_Mm1t SINE B2 1 191 -2 5 1061 761 241 53 79 chr1 62470584 62470773 -134724659 + B3 SINE B2 3 186 -9 5 1061 948 227 43 19 chr1 62472675 62472886 -134722546 + B3 SINE B2 1 216 0 5 1061 990 98 0 0 chr1 62472900 62473032 -134722400 + B2_Mm2 SINE B2 1 132 -63 5 1061 216 361 30 40 chr1 62473992 62474093 -134721339 + L2b LINE L2 3271 3370 -5 5 1061 537 297 3 36 chr1 62477053 62477206 -134718226 - B4A SINE B4 -143 149 2 5 1061 234 298 42 101 chr1 62477697 62477866 -134717566 - ORR1E LTR MaLR -213 161 3 5 1061 344 194 15 0 chr1 62479153 62479220 -134716212 - RMER30 DNA MER1_type -2 200 133 5 1061 557 293 25 0 chr1 62479874 62480031 -134715401 - RSINE1 SINE B4 -2 163 3 6 1061 537 284 54 35 chr1 62480031 62480348 -134715084 + L1MB3 LINE L1 5803 6125 -58 6 1061 502 316 46 0 chr1 62480938 62481090 -134714342 + RSINE1 SINE B4 1 159 -6 6 1061 192 255 54 18 chr1 62481868 62481897 -134713535 + L2a LINE L2 3354 3411 -15 6 1061 198 37 0 0 chr1 62481897 62481924 -134713508 + MIRm SINE MIR 237 263 -13 6 1061 223 210 62 0 chr1 62481956 62482037 -134713395 + GA-rich Low_complexity Low_complexity 3 88 0 6 1061 1113 236 84 23 chr1 62483715 62484062 -134711370 + Lx8 LINE L1 6897 7264 -209 6 1061 3611 127 112 27 chr1 62484116 62484812 -134710620 - RMER6A LTR ERVK 0 756 2 6 1061 489 34 0 0 chr1 62484812 62484871 -134710561 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1061 186 133 0 0 chr1 62484969 62484999 -134710433 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1061 285 197 0 0 chr1 62485513 62485579 -134709853 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 6 1061 22 0 0 0 chr1 62488665 62488687 -134706745 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 296 241 0 0 chr1 62488868 62488922 -134706510 + MER63D DNA AcHobo 24 77 -984 6 1061 266 343 32 90 chr1 62489105 62489294 -134706138 + MER5A DNA MER1_type 12 189 0 6 1061 1012 167 4 172 chr1 62489519 62489787 -134705645 - URR1B DNA MER1_type -2 223 1 6 1061 27 29 0 0 chr1 62490304 62490338 -134705094 + AT_rich Low_complexity Low_complexity 1 34 0 6 1061 458 284 76 82 chr1 62490495 62490679 -134704753 + MER20 DNA MER1_type 36 218 -1 6 1061 833 311 42 7 chr1 62491008 62491296 -134704136 + L3 LINE CR1 3683 3980 -509 6 1061 490 323 20 75 chr1 62495441 62495642 -134699790 + MER20 DNA MER1_type 27 216 -3 6 1061 765 250 87 0 chr1 62496965 62497149 -134698283 - B3 SINE B2 -2 214 15 6 1061 210 37 0 0 chr1 62497638 62497665 -134697767 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 6 1061 584 27 14 0 chr1 62497665 62497738 -134697694 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1061 447 19 0 0 chr1 62498195 62498247 -134697185 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 6 1061 570 198 0 0 chr1 62499443 62499600 -134695832 + CT-rich Low_complexity Low_complexity 1 157 0 6 1061 272 357 31 0 chr1 62500360 62500458 -134694974 + PB1D9 SINE Alu 20 120 0 1 1061 374 260 147 46 chr1 62501939 62502157 -134693275 + HAL1-3A_ME LINE L1 2293 2532 -326 2 1061 1021 266 17 42 chr1 62502199 62502486 -134692946 + MTE2a LTR MaLR 15 294 -85 3 1061 187 29 27 54 chr1 62502675 62502712 -134692720 + (TAAAAA)n Simple_repeat Simple_repeat 4 39 0 4 1061 21 0 0 0 chr1 62502831 62502852 -134692580 + AT_rich Low_complexity Low_complexity 1 21 0 5 1061 25 0 0 0 chr1 62503303 62503328 -134692104 + AT_rich Low_complexity Low_complexity 1 25 0 6 1061 402 311 14 16 chr1 62503509 62503751 -134691681 + MER47B DNA MER2_type 18 416 -2 7 1061 226 262 94 28 chr1 62503994 62504100 -134691332 + Tigger15a DNA TcMar 517 629 -86 8 1061 7661 37 0 2 chr1 62504191 62505133 -134690299 + L1Md_T LINE L1 5671 6582 0 9 1061 1475 235 35 37 chr1 62507044 62507508 -134687924 + RLTR20A LTR ERVK 50 512 -29 1 1061 8537 109 33 7 chr1 62508393 62509764 -134685668 - Lx2 LINE L1 -1 6996 5590 1 1061 556 302 109 22 chr1 62511294 62511524 -134683908 + B4A SINE B4 43 292 0 1 1061 243 0 0 0 chr1 62511725 62511752 -134683680 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1061 222 62 0 0 chr1 62511971 62512003 -134683429 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1 1061 784 291 57 21 chr1 62512572 62512955 -134682477 + L1MC4a LINE L1 5257 5653 -2229 1 1061 409 275 24 32 chr1 62513015 62513139 -134682293 + Tigger1 DNA MER2_type 1 123 -2295 1 1061 702 233 12 25 chr1 62513172 62513335 -134682097 + Tigger1 DNA MER2_type 2253 2413 -5 1 1061 268 319 59 21 chr1 62513335 62513572 -134681860 + L1MC4a LINE L1 5709 5954 -1928 1 1061 1035 234 7 73 chr1 62513685 62513928 -134681504 + B4A SINE B4 3 230 -62 1 1061 675 182 38 0 chr1 62513928 62514060 -134681372 + B1_Mur2 SINE Alu 5 141 -8 1 1061 1035 234 7 73 chr1 62514060 62514088 -134681344 + B4A SINE B4 231 256 -36 1 1061 348 103 0 0 chr1 62514091 62514149 -134681283 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1061 698 320 62 10 chr1 62514414 62514704 -134680728 + MLT1A0 LTR MaLR 24 328 -37 2 1061 930 278 48 14 chr1 62514942 62515299 -134680133 + L1MA4 LINE L1 5569 5937 -363 2 1061 200 250 0 0 chr1 62515315 62515355 -134680077 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1061 205 167 18 18 chr1 62515491 62515546 -134679886 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1061 183 84 40 66 chr1 62516775 62516851 -134678581 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 2 1061 7562 42 0 0 chr1 62517243 62518198 -134677234 + L1Md_F2 LINE L1 4632 5586 -297 2 1061 8052 44 1 10 chr1 62518198 62519203 -134676229 + L1Md_F2 LINE L1 5587 6582 0 2 1061 1095 213 151 19 chr1 62519219 62519365 -134676067 + ORR1D1 LTR MaLR 1 172 -202 2 1061 1072 77 13 0 chr1 62519365 62519521 -134675911 + (TC)n Simple_repeat Simple_repeat 2 159 0 2 1061 1095 213 151 19 chr1 62519521 62519699 -134675733 + ORR1D1 LTR MaLR 173 367 -7 2 1061 25 75 0 0 chr1 62520311 62520364 -134675068 + AT_rich Low_complexity Low_complexity 1 53 0 2 1062 25 75 0 0 chr1 62521552 62521605 -134673827 + AT_rich Low_complexity Low_complexity 1 53 0 2 1062 192 111 0 0 chr1 62522692 62522728 -134672704 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1062 1295 219 127 80 chr1 62522734 62523002 -134672430 + MTD LTR MaLR 32 331 -88 3 1062 237 65 0 0 chr1 62523002 62523033 -134672399 + (CATAA)n Simple_repeat Simple_repeat 2 32 0 3 1062 1295 219 127 80 chr1 62523033 62523127 -134672305 + MTD LTR MaLR 332 411 -8 3 1062 635 262 30 30 chr1 62523184 62523381 -134672051 + MER3 DNA MER1_type 9 205 -4 3 1062 204 67 0 0 chr1 62524725 62524755 -134670677 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1062 27 0 0 0 chr1 62525616 62525643 -134669789 + AT_rich Low_complexity Low_complexity 1 27 0 3 1062 989 262 84 8 chr1 62528323 62528649 -134666783 + MTEa LTR MaLR 6 378 -1 3 1062 183 358 0 15 chr1 62529401 62529469 -134665963 - MIRm SINE MIR -3 273 207 3 1062 190 425 80 22 chr1 62529606 62529832 -134665600 - L2c LINE L2 -229 3158 2920 3 1062 181 250 17 35 chr1 62530221 62530279 -134665153 - MIRc SINE MIR -116 152 96 3 1062 3710 211 119 6 chr1 62530761 62531634 -134663798 - RCHARR1 DNA MER1_type 0 974 3 4 1062 24 85 0 0 chr1 62531928 62531987 -134663445 + AT_rich Low_complexity Low_complexity 1 59 0 4 1062 360 0 0 0 chr1 62531992 62532032 -134663400 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1062 2009 80 26 62 chr1 62532376 62532682 -134662750 - L1_Mus2 LINE L1 0 6566 6272 4 1062 1437 229 68 9 chr1 62532720 62533059 -134662373 - MTD LTR MaLR -60 359 1 4 1062 314 229 96 77 chr1 62533131 62533235 -134662197 + PB1D10 SINE Alu 1 106 -11 4 1062 200 322 81 0 chr1 62533863 62533950 -134661482 - L2c LINE L2 -15 3372 3279 4 1062 203 138 0 0 chr1 62535857 62535886 -134659546 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 4 1062 816 65 0 0 chr1 62536614 62536721 -134658711 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 4 1062 257 243 52 39 chr1 62536732 62536809 -134658623 - L2a LINE L2 0 3426 3349 4 1062 320 345 22 62 chr1 62537757 62537936 -134657496 + MIR SINE MIR 22 193 -69 5 1062 267 347 20 10 chr1 62538044 62538143 -134657289 + ID_B1 SINE B4 77 176 -48 5 1062 411 302 9 0 chr1 62538055 62538161 -134657271 + PB1D10 SINE Alu 7 113 -4 5 1062 520 275 106 62 chr1 62538318 62538659 -134656773 - L1MD2 LINE L1 -256 6103 5748 5 1062 1813 267 83 77 chr1 62538762 62540122 -134655310 - L1MD2 LINE L1 -1955 4191 2824 5 1062 303 333 42 0 chr1 62540208 62540373 -134655059 - L1MD2 LINE L1 -4738 1504 1333 5 1062 373 271 12 0 chr1 62540394 62540560 -134654872 + (TG)n Simple_repeat Simple_repeat 1 168 0 5 1062 250 285 19 0 chr1 62540552 62540710 -134654722 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 5 1062 272 302 130 32 chr1 62540795 62541195 -134654237 - L1MD2 LINE L1 -4942 1300 862 5 1062 3967 221 55 16 chr1 62541189 62542171 -134653261 - Lx9 LINE L1 -8 7636 6617 5 1062 360 344 19 26 chr1 62542189 62542344 -134653088 - L1MD2 LINE L1 -5704 538 385 5 1062 255 335 11 68 chr1 62542345 62542521 -134652911 - L1MD2 LINE L1 -5825 417 252 5 1062 741 304 48 22 chr1 62542712 62542941 -134652491 + B4 SINE B4 2 236 -56 5 1062 228 337 62 17 chr1 62543579 62543666 -134651766 + RMER12 LTR ERVK 677 768 -554 5 1062 249 33 0 0 chr1 62543666 62543696 -134651736 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1062 228 337 62 17 chr1 62543696 62543786 -134651646 + RMER12 LTR ERVK 769 861 -461 5 1062 213 224 0 0 chr1 62544131 62544189 -134651243 + (TGG)n Simple_repeat Simple_repeat 1 58 0 6 1062 468 0 0 0 chr1 62544592 62544644 -134650788 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 6 1062 197 33 33 0 chr1 62545095 62545125 -134650307 + (TTCCC)n Simple_repeat Simple_repeat 3 33 0 6 1062 283 324 38 9 chr1 62545377 62545483 -134649949 - MER5A DNA MER1_type -63 126 18 6 1062 868 149 0 134 chr1 62546419 62546613 -134648819 - MTC LTR MaLR -7 414 247 6 1062 784 212 270 62 chr1 62546609 62546946 -134648486 - MT2B LTR ERVL -192 409 3 6 1062 322 281 8 103 chr1 62546999 62547125 -134648307 + ID4_ SINE ID 4 118 -34 6 1062 285 240 36 52 chr1 62547563 62547652 -134647780 + ID4 SINE ID 11 96 -56 6 1062 742 259 11 48 chr1 62547740 62547977 -134647455 - Lx9 LINE L1 -602 7042 6712 6 1062 619 273 104 18 chr1 62547977 62548257 -134647175 - Lx8 LINE L1 -1057 6416 6113 6 1062 1931 242 110 23 chr1 62548380 62549209 -134646223 - Lx9 LINE L1 -885 6115 5169 6 1062 396 240 0 0 chr1 62549209 62549309 -134646123 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 1062 349 207 61 0 chr1 62549311 62549393 -134646039 - Lx9 LINE L1 -680 5167 5081 6 1062 741 261 0 6 chr1 62549401 62549563 -134645869 + B3A SINE B2 1 161 -37 7 1062 24 0 0 0 chr1 62550556 62550580 -134644852 + AT_rich Low_complexity Low_complexity 1 24 0 7 1062 417 262 0 0 chr1 62551253 62551337 -134644095 - RSINE1 SINE B4 -66 99 16 7 1062 185 289 165 9 chr1 62551343 62551458 -134643974 - MIRb SINE MIR -124 144 12 7 1062 237 196 182 71 chr1 62552097 62552196 -134643236 - MER5A1 DNA MER1_type -22 144 35 7 1062 226 248 158 57 chr1 62553224 62553382 -134642050 - Charlie5 DNA MER1_type -77 2547 2374 7 1062 333 0 0 0 chr1 62553554 62553591 -134641841 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1062 396 0 0 0 chr1 62553591 62553634 -134641798 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1062 356 330 25 8 chr1 62555421 62555540 -134639892 + MIR3 SINE MIR 88 208 0 7 1062 241 329 14 0 chr1 62556870 62556940 -134638492 + PB1D7 SINE Alu 17 87 -33 8 1062 21 36 0 0 chr1 62556986 62557014 -134638418 + AT_rich Low_complexity Low_complexity 1 28 0 8 1062 225 298 0 0 chr1 62557615 62557719 -134637713 + (CA)n Simple_repeat Simple_repeat 1 104 0 8 1062 201 122 39 39 chr1 62558236 62558313 -134637119 + (TTA)n Simple_repeat Simple_repeat 2 78 0 8 1062 464 257 0 68 chr1 62559244 62559361 -134636071 - PB1D10 SINE Alu 0 117 9 8 1062 242 214 35 140 chr1 62559270 62559384 -134636048 - MT2B2 LTR ERVL -329 255 154 8 1062 25 0 0 0 chr1 62561889 62561914 -134633518 + AT_rich Low_complexity Low_complexity 1 25 0 8 1062 285 278 11 0 chr1 62567017 62567107 -134628325 + (TA)n Simple_repeat Simple_repeat 2 92 0 8 1062 248 177 16 31 chr1 62568210 62568274 -134627158 + L2a LINE L2 3262 3324 -102 8 1062 180 135 0 0 chr1 62569048 62569085 -134626347 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1062 381 93 0 0 chr1 62569156 62569210 -134626222 + (T)n Simple_repeat Simple_repeat 1 54 0 9 1062 182 122 0 68 chr1 62569984 62570028 -134625404 + T-rich Low_complexity Low_complexity 1 41 0 9 1062 1011 102 66 0 chr1 62570062 62570199 -134625233 - B1_Mus1 SINE Alu -2 146 1 9 1062 246 320 102 59 chr1 62570326 62570512 -134624920 + MamRep137 DNA TcMar? 180 373 -71 9 1062 199 106 20 41 chr1 62570567 62570616 -134624816 + T-rich Low_complexity Low_complexity 2 49 0 9 1062 252 130 0 0 chr1 62570991 62571037 -134624395 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 1062 3196 71 30 0 chr1 62571120 62571514 -134623918 - L1_Mus1 LINE L1 0 6567 6162 9 1062 875 126 30 0 chr1 62572682 62572817 -134622615 - B1_Mus1 SINE Alu 0 148 10 9 1062 183 80 0 0 chr1 62575220 62575245 -134620187 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 9 1062 289 224 172 10 chr1 62575738 62575837 -134619595 + MER117 DNA MER1_type 24 138 -59 9 1062 512 261 128 7 chr1 62577029 62577209 -134618223 - B3A SINE B2 0 216 8 1 1062 288 307 50 119 chr1 62577789 62577870 -134617562 + L2c LINE L2 3052 3125 -262 1 1062 1313 129 119 0 chr1 62577870 62578072 -134617360 - URR1A DNA MER1_type 0 226 1 1 1062 288 307 50 119 chr1 62578072 62578293 -134617139 + L2c LINE L2 3126 3333 -54 1 1062 381 22 0 0 chr1 62578680 62578726 -134616706 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1062 398 20 20 0 chr1 62579013 62579064 -134616368 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1062 435 311 34 0 chr1 62580449 62580597 -134614835 + ID_B1 SINE B4 70 222 -2 1 1062 2887 22 5 147 chr1 62580616 62581044 -134614388 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1062 55013 32 16 3 chr1 62581044 62587440 -134607992 - IAPEz-int LTR ERVK 0 6481 8 1 1062 2887 22 5 147 chr1 62587440 62587868 -134607564 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1062 645 294 50 5 chr1 62589286 62589488 -134605944 - MER2 DNA MER2_type -34 311 101 1 1062 813 266 78 64 chr1 62589582 62589863 -134605569 - B4 SINE B4 -4 288 4 1 1062 21 0 0 0 chr1 62590179 62590200 -134605232 + AT_rich Low_complexity Low_complexity 1 21 0 1 1062 225 0 0 0 chr1 62591209 62591234 -134604198 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1062 1452 262 61 25 chr1 62591531 62591926 -134603506 + MTD LTR MaLR 11 419 0 1 1062 489 275 58 0 chr1 62592087 62592207 -134603225 + ID_B1 SINE B4 84 210 -14 1 1062 288 77 0 0 chr1 62592208 62592247 -134603185 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1062 360 0 0 0 chr1 62592348 62592388 -134603044 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1062 377 344 130 13 chr1 62592403 62592633 -134602799 - MLT1K LTR MaLR -3 592 336 1 1062 260 333 93 19 chr1 62592784 62592891 -134602541 - MLT1K LTR MaLR -450 145 31 1 1062 1715 233 65 5 chr1 62593289 62593656 -134601776 + MTD LTR MaLR 1 389 -30 1 1062 2899 56 32 0 chr1 62593661 62594003 -134601429 - L1_Mus1 LINE L1 0 6567 6215 1 1062 317 333 29 29 chr1 62594969 62595105 -134600327 - Tigger16a DNA Tigger -3 930 795 1 1062 204 304 0 18 chr1 62596037 62596094 -134599338 + MIR SINE MIR 197 252 -10 1 1062 527 318 77 4 chr1 62596362 62596608 -134598824 - MamGypLTR1a LTR Gypsy -510 274 11 1 1062 243 0 0 0 chr1 62597705 62597732 -134597700 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1062 591 219 11 6 chr1 62598479 62598658 -134596774 + CT-rich Low_complexity Low_complexity 1 180 0 1 1062 224 205 0 0 chr1 62598659 62598698 -134596734 + polypyrimidine Low_complexity Low_complexity 1 39 0 1 1062 248 254 0 14 chr1 62598701 62598773 -134596659 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 1 1062 207 0 0 0 chr1 62599675 62599698 -134595734 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 1 1062 261 128 0 0 chr1 62600320 62600367 -134595065 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1062 227 234 0 30 chr1 62600374 62600440 -134594992 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 1 1062 396 355 54 14 chr1 62600917 62601194 -134594238 + B4A SINE B4 5 292 0 1 1062 381 43 0 0 chr1 62601235 62601282 -134594150 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1062 482 274 19 9 chr1 62601896 62602003 -134593429 - B1_Mur1 SINE Alu -40 109 2 1 1062 28 71 0 0 chr1 62603131 62603187 -134592245 + AT_rich Low_complexity Low_complexity 1 56 0 1 1062 306 98 0 0 chr1 62604583 62604634 -134590798 + (TCTG)n Simple_repeat Simple_repeat 3 53 0 1 1062 351 65 0 0 chr1 62606411 62606457 -134588975 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1062 306 0 0 0 chr1 62608712 62608746 -134586686 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1062 180 0 0 0 chr1 62611143 62611163 -134584269 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 1 1062 354 250 33 41 chr1 62613279 62613400 -134582032 - ID_B1 SINE B4 0 224 105 1 1062 532 242 44 22 chr1 62617425 62617560 -134577872 + B1_Mur1 SINE Alu 3 140 -9 1 1062 2359 172 38 131 chr1 62617752 62618386 -134577046 - RMER15 LTR ERVL 0 575 1 1 1062 1199 164 5 23 chr1 62621162 62621381 -134574051 - URR1B DNA MER1_type -10 215 1 1 1062 397 248 76 93 chr1 62622167 62622403 -134573029 + B4A SINE B4 7 238 -54 1 1062 243 0 0 0 chr1 62622643 62622670 -134572762 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1062 306 0 0 0 chr1 62622670 62622703 -134572729 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1062 258 32 0 0 chr1 62623947 62623978 -134571454 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1062 225 0 0 0 chr1 62625548 62625573 -134569859 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1062 357 24 0 0 chr1 62625937 62625979 -134569453 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1062 265 346 0 9 chr1 62626379 62626487 -134568945 + L1M5 LINE L1 5763 5869 -255 1 1062 27 62 0 0 chr1 62626571 62626619 -134568813 + AT_rich Low_complexity Low_complexity 1 48 0 1 1062 333 0 0 0 chr1 62627389 62627426 -134568006 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1062 465 284 8 8 chr1 62627559 62627676 -134567756 - B1F1 SINE Alu 0 149 33 1 1062 968 275 31 35 chr1 62627826 62628112 -134567320 - B4A SINE B4 -6 286 2 1 1062 2696 226 57 26 chr1 62628692 62629625 -134565807 + L1MC1 LINE L1 5025 5979 -354 1 1062 328 271 163 80 chr1 62629690 62630003 -134565429 + L1MC1 LINE L1 5992 6330 -3 1 1062 1477 60 16 16 chr1 62630003 62630191 -134565241 + B2_Mm2 SINE B2 4 191 -4 1 1062 333 344 56 19 chr1 62630207 62630474 -134564958 + B4A SINE B4 4 280 -12 1 1062 1206 102 0 0 chr1 62630518 62630694 -134564738 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1062 463 292 46 29 chr1 62630735 62630908 -134564524 + B4 SINE B4 50 225 -67 1 1062 1721 145 31 40 chr1 62631771 62632095 -134563337 - ORR1A4 LTR MaLR -8 321 1 1 1062 401 212 137 29 chr1 62632304 62632406 -134563026 + PB1D10 SINE Alu 5 117 0 1 1062 321 221 29 0 chr1 62632574 62632678 -134562754 + GA-rich Low_complexity Low_complexity 2 108 0 1 1062 387 333 28 35 chr1 62633587 62633730 -134561702 + RSINE1 SINE B4 24 165 0 1 1062 780 288 56 11 chr1 62633758 62634025 -134561407 + L1MC3 LINE L1 7486 7764 -21 1 1062 372 266 107 70 chr1 62635378 62635649 -134559783 + B4A SINE B4 2 282 -10 1 1062 431 85 49 0 chr1 62635680 62635762 -134559670 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1062 477 50 0 0 chr1 62636220 62636280 -134559152 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1062 22 56 0 0 chr1 62637194 62637230 -134558202 + AT_rich Low_complexity Low_complexity 1 36 0 1 1062 504 0 0 0 chr1 62638459 62638515 -134556917 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1062 294 309 106 37 chr1 62638543 62638731 -134556701 + MIR SINE MIR 31 231 -31 1 1062 187 347 52 21 chr1 62639679 62639776 -134555656 + L2b LINE L2 3190 3289 -86 1 1062 336 303 79 35 chr1 62640020 62640222 -134555210 - MIR SINE MIR -20 242 32 1 1062 335 259 0 12 chr1 62640300 62640382 -134555050 + L2c LINE L2 3252 3332 -55 1 1062 1340 51 0 0 chr1 62642759 62642917 -134552515 - L1_Mus1 LINE L1 -235 6332 6175 1 1062 1763 69 13 29 chr1 62642917 62643156 -134552276 + L1_Mus1 LINE L1 6333 6567 0 1 1062 204 97 0 0 chr1 62645738 62645769 -134549663 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 1062 381 292 8 0 chr1 62646830 62646950 -134548482 + L1MC4 LINE L1 7777 7897 -145 1 1062 499 276 90 17 chr1 62647790 62647967 -134547465 + B4 SINE B4 50 239 -53 1 1062 387 0 0 0 chr1 62647998 62648041 -134547391 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1062 393 39 0 0 chr1 62648041 62648091 -134547341 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1062 423 178 0 0 chr1 62648104 62648239 -134547193 + CT-rich Low_complexity Low_complexity 2 136 0 1 1062 279 0 0 0 chr1 62648239 62648270 -134547162 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1062 364 297 10 0 chr1 62648465 62648566 -134546866 - L1M5 LINE L1 -469 5655 5554 1 1062 756 177 46 0 chr1 62648621 62648751 -134546681 + B1_Mur2 SINE Alu 1 136 -13 1 1062 282 143 0 0 chr1 62649366 62649429 -134546003 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 1 1062 510 17 0 0 chr1 62649596 62649655 -134545777 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 1 1062 408 302 37 19 chr1 62649871 62650033 -134545399 - RLTR42-int LTR ERVK -4122 1400 1236 1 1062 1189 246 18 7 chr1 62650839 62651125 -134544307 + B4A SINE B4 2 290 -2 1 1062 398 208 10 0 chr1 62651196 62651233 -134544199 + polypurine Low_complexity Low_complexity 2 39 0 1 1062 1128 128 0 0 chr1 62651233 62651412 -134544020 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1062 398 208 10 0 chr1 62651412 62651475 -134543957 + polypurine Low_complexity Low_complexity 40 102 0 1 1062 256 62 0 0 chr1 62651475 62651507 -134543925 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1 1063 206 57 57 0 chr1 62653490 62653525 -134541907 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1063 251 226 16 16 chr1 62654494 62654557 -134540875 - B4A SINE B4 -16 276 214 1 1063 2606 39 3 0 chr1 62654940 62655251 -134540181 + L1Md_T LINE L1 6270 6581 -1 1 1063 2392 278 105 22 chr1 62655568 62655681 -134539751 - L1MC1 LINE L1 -8 6325 6208 1 1063 198 0 0 0 chr1 62655681 62655703 -134539729 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1063 2392 260 93 22 chr1 62655703 62657207 -134538225 - L1MC1 LINE L1 -126 6207 4597 1 1063 233 160 20 0 chr1 62657217 62657267 -134538165 - MTE2a LTR MaLR -23 356 306 1 1063 550 229 19 30 chr1 62657314 62657503 -134537929 + L1MA4 LINE L1 5791 5969 -331 1 1063 513 0 0 0 chr1 62658332 62658389 -134537043 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 1 1063 416 286 92 53 chr1 62659934 62660215 -134535217 + B4A SINE B4 1 292 0 1 1063 823 197 0 13 chr1 62660636 62660785 -134534647 + B3A SINE B2 2 148 -50 1 1063 437 62 15 0 chr1 62660785 62660850 -134534582 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1063 460 261 36 94 chr1 62661295 62661519 -134533913 + MamRep1161 DNA TcMar 176 386 -571 1 1063 489 190 0 0 chr1 62661964 62662064 -134533368 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 1063 1535 105 152 0 chr1 62662088 62662365 -134533067 - ORR1A2 LTR MaLR -8 319 1 2 1063 257 347 105 0 chr1 62662786 62662910 -134532522 - MIR SINE MIR -2 260 124 2 1063 529 266 165 9 chr1 62663279 62663503 -134531929 + B4A SINE B4 2 260 -32 2 1063 198 191 0 0 chr1 62663520 62663562 -134531870 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 2 1063 388 291 56 12 chr1 62663801 62663961 -134531471 + MER33 DNA MER1_type 158 324 0 2 1063 187 316 157 9 chr1 62667092 62667128 -134528304 + MIRm SINE MIR 128 259 -17 2 1063 275 279 101 0 chr1 62667128 62667207 -134528225 + L2b LINE L2 3270 3356 -19 2 1063 407 361 67 36 chr1 62669148 62669401 -134526031 - MLT1K LTR MaLR -322 273 13 2 1063 285 321 124 45 chr1 62670111 62670313 -134525119 - MIRb SINE MIR -17 251 34 2 1063 243 0 0 0 chr1 62672235 62672262 -134523170 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1063 1213 161 27 5 chr1 62673579 62673798 -134521634 - URR1B DNA MER1_type 0 225 2 2 1063 1277 172 14 9 chr1 62675084 62675307 -134520125 + URR1A DNA MER1_type 3 226 0 2 1063 513 0 0 0 chr1 62677481 62677538 -134517894 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1063 191 170 21 0 chr1 62677567 62677614 -134517818 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2 1063 801 121 0 0 chr1 62678960 62679084 -134516348 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 2 1063 183 100 0 0 chr1 62679100 62679130 -134516302 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1063 26 0 0 0 chr1 62680022 62680048 -134515384 + AT_rich Low_complexity Low_complexity 1 26 0 2 1063 627 339 53 16 chr1 62680167 62680488 -134514944 - Lx8 LINE L1 -93 7380 7048 2 1063 345 228 16 104 chr1 62681161 62681350 -134514082 + MTEa LTR MaLR 210 374 -5 2 1063 294 29 0 0 chr1 62681414 62681449 -134513983 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1063 484 235 61 0 chr1 62681472 62681587 -134513845 - B3A SINE B2 -76 122 1 2 1063 238 349 88 26 chr1 62683766 62683960 -134511472 - MLT1J LTR MaLR -16 496 291 2 1063 432 0 0 0 chr1 62684848 62684896 -134510536 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1063 423 0 0 0 chr1 62685548 62685595 -134509837 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1063 249 313 131 0 chr1 62686537 62686636 -134508796 + B1F1 SINE Alu 38 149 0 2 1063 660 182 242 6 chr1 62688948 62689130 -134506302 - URR1B DNA MER1_type 0 225 1 2 1063 312 365 153 5 chr1 62689208 62689398 -134506034 - LTR16A LTR ERVL -112 339 122 2 1063 271 256 23 11 chr1 62690091 62690178 -134505254 + MER58A DNA MER1_type 37 124 -100 2 1063 2772 28 6 6 chr1 62690178 62690505 -134504927 + IAPLTR2b LTR ERVK 1 327 0 2 1063 241 191 21 0 chr1 62690676 62690723 -134504709 + MIR SINE MIR 70 117 -91 2 1063 258 338 141 7 chr1 62690760 62690909 -134504523 + MER63A DNA AcHobo 37 205 -5 2 1063 709 232 58 34 chr1 62692700 62692905 -134502527 - MTEb LTR MaLR -169 210 1 2 1063 1325 126 95 19 chr1 62693378 62693588 -134501844 + URR1A DNA MER1_type 1 226 0 2 1063 194 189 0 0 chr1 62693987 62694024 -134501408 - MIRc SINE MIR -119 149 113 2 1063 183 129 0 0 chr1 62695069 62695100 -134500332 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1063 207 0 0 0 chr1 62696134 62696157 -134499275 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1063 234 244 168 0 chr1 62697386 62697517 -134497915 - MER112 DNA MER1_type -17 244 92 2 1063 502 325 83 29 chr1 62697600 62697876 -134497556 - MLT1C LTR MaLR -19 448 158 2 1063 2399 172 87 29 chr1 62697931 62698446 -134496986 - Lx2B LINE L1 -557 6443 5899 2 1063 2760 179 22 15 chr1 62698446 62698990 -134496442 + Lx2B LINE L1 6448 6995 -5 2 1063 308 235 15 0 chr1 62699077 62699145 -134496287 + ID_B1 SINE B4 146 214 -10 2 1063 235 336 8 40 chr1 62699177 62699301 -134496131 - MLT1C LTR MaLR -315 152 33 2 1063 568 262 0 34 chr1 62699862 62700008 -134495424 + B4A SINE B4 1 141 -151 2 1063 411 106 0 0 chr1 62700079 62700145 -134495287 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1063 269 185 15 0 chr1 62700221 62700286 -134495146 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 1063 892 144 203 0 chr1 62700425 62700612 -134494820 - URR1B DNA MER1_type 0 225 1 2 1063 473 296 49 22 chr1 62700865 62701048 -134494384 + MLT1E2 LTR MaLR 1 188 -439 2 1063 336 267 124 24 chr1 62701236 62701405 -134494027 + MLT1E2 LTR MaLR 306 491 -14 2 1063 614 229 72 15 chr1 62703028 62703204 -134492228 - B4 SINE B4 -1 291 86 2 1063 2513 211 55 31 chr1 62703322 62703843 -134491589 - RMER17B LTR ERVK -5 901 385 2 1063 195 42 0 0 chr1 62703843 62703867 -134491565 + (G)n Simple_repeat Simple_repeat 1 24 0 2 1063 2513 181 86 18 chr1 62703867 62704172 -134491260 - RMER17B LTR ERVK -574 384 1 2 1063 288 156 0 0 chr1 62704490 62704535 -134490897 - B4A SINE B4 -200 92 48 2 1063 218 317 67 0 chr1 62704688 62704792 -134490640 + MIRb SINE MIR 47 157 -111 2 1063 24 0 0 0 chr1 62704994 62705018 -134490414 + AT_rich Low_complexity Low_complexity 1 24 0 2 1063 315 85 0 0 chr1 62705079 62705126 -134490306 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 2 1063 387 0 0 0 chr1 62705232 62705275 -134490157 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1063 234 250 158 0 chr1 62705439 62705515 -134489917 + PB1D10 SINE Alu 25 112 -5 2 1063 408 40 0 0 chr1 62705525 62705575 -134489857 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 2 1063 225 0 0 0 chr1 62705867 62705892 -134489540 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 1063 798 263 20 5 chr1 62706643 62706842 -134488590 + B3 SINE B2 15 216 0 2 1063 232 316 123 12 chr1 62707031 62707201 -134488231 + MIRb SINE MIR 55 243 -19 2 1063 378 281 19 10 chr1 62707274 62707378 -134488054 + MTEa LTR MaLR 20 124 -235 2 1063 877 18 18 0 chr1 62708331 62708442 -134486990 + (GAA)n Simple_repeat Simple_repeat 2 114 0 2 1063 487 278 28 56 chr1 62708505 62708684 -134486748 + MTEa LTR MaLR 206 379 0 2 1063 440 234 9 9 chr1 62708863 62708971 -134486461 + ERVL-int LTR ERVL 5647 5754 -3 2 1063 2014 127 67 6 chr1 62710532 62710873 -134484559 + ORR1B2 LTR MaLR 6 367 0 2 1063 539 288 67 40 chr1 62710914 62711243 -134484189 + L1MA6 LINE L1 5961 6298 -2 2 1063 477 0 0 0 chr1 62712354 62712407 -134483025 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1063 290 312 13 0 chr1 62713178 62713255 -134482177 + RSINE1 SINE B4 3 80 -85 2 1063 237 65 0 0 chr1 62713963 62713994 -134481438 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1063 226 148 0 36 chr1 62714078 62714134 -134481298 + GA-rich Low_complexity Low_complexity 1 54 0 2 1063 839 258 68 51 chr1 62715834 62716189 -134479243 - MLT1B LTR MaLR -7 383 23 2 1063 662 167 98 36 chr1 62717429 62717622 -134477810 + Lx9 LINE L1 7414 7618 -26 2 1063 225 0 0 0 chr1 62717726 62717751 -134477681 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1063 38785 29 0 0 chr1 62717929 62724142 -134471290 - L1Md_T LINE L1 0 6585 278 2 1063 344 262 12 0 chr1 62724873 62724953 -134470479 + ID4 SINE ID 2 82 -1 2 1063 675 282 90 76 chr1 62726046 62726468 -134468964 - RMER10A LTR ERVL -3 439 12 2 1063 4258 61 0 18 chr1 62726511 62727063 -134468369 + L1Md_F2 LINE L1 6041 6582 0 2 1063 207 0 0 0 chr1 62727075 62727098 -134468334 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1063 1059 224 5 9 chr1 62728335 62728547 -134466885 - B3 SINE B2 -4 212 2 2 1063 269 301 47 37 chr1 62728870 62728977 -134466455 - MIR3 SINE MIR -11 197 90 2 1063 249 228 88 0 chr1 62730073 62730130 -134465302 + MIR SINE MIR 155 216 -46 2 1063 260 239 43 29 chr1 62730172 62730241 -134465191 - AmnSINE1 SINE SINE -21 554 485 2 1063 558 345 91 83 chr1 62731473 62731957 -134463475 + MLT1K LTR MaLR 107 594 -1 2 1063 649 239 21 7 chr1 62732184 62732327 -134463105 + B1_Mur1 SINE Alu 1 145 -4 2 1063 252 255 0 138 chr1 62732585 62732694 -134462738 - MTE2a LTR MaLR -7 372 279 2 1063 243 0 0 0 chr1 62733099 62733126 -134462306 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 1063 489 281 60 38 chr1 62733206 62733391 -134462041 + MIR SINE MIR 63 251 -11 2 1063 564 116 0 0 chr1 62733689 62733775 -134461657 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2 1063 243 159 159 0 chr1 62735466 62735529 -134459903 - L3 LINE CR1 -22 4467 4395 2 1063 569 165 17 0 chr1 62736734 62736849 -134458583 + G-rich Low_complexity Low_complexity 6 122 0 2 1063 708 139 0 0 chr1 62736937 62737095 -134458337 + (TG)n Simple_repeat Simple_repeat 2 159 0 2 1063 375 337 65 38 chr1 62737920 62738105 -134457327 - ORR1E LTR MaLR -169 190 1 2 1063 494 99 25 0 chr1 62738571 62738652 -134456780 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 2 1063 204 40 0 0 chr1 62739435 62739460 -134455972 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1063 27 49 0 0 chr1 62740588 62740629 -134454803 + AT_rich Low_complexity Low_complexity 1 41 0 2 1063 240 254 0 29 chr1 62740937 62741006 -134454426 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 2 1063 323 297 101 30 chr1 62741250 62741448 -134453984 + L2a LINE L2 3215 3426 0 2 1063 1136 64 0 7 chr1 62741571 62741713 -134453719 + B1_Mm SINE Alu 1 141 -6 2 1063 678 166 17 8 chr1 62743283 62743525 -134451907 + (CA)n Simple_repeat Simple_repeat 1 244 0 2 1063 192 40 0 0 chr1 62744587 62744612 -134450820 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1063 451 276 65 0 chr1 62745225 62745348 -134450084 - MER3 DNA MER1_type 0 209 79 2 1063 2707 152 92 16 chr1 62745351 62745840 -134449592 - RMER15 LTR ERVL -5 570 45 2 1063 419 246 147 52 chr1 62745840 62745956 -134449476 + B1_Mus1 SINE Alu 2 128 -20 2 1063 396 0 0 0 chr1 62747497 62747541 -134447891 + (TTA)n Simple_repeat Simple_repeat 1 44 0 3 1063 339 130 0 0 chr1 62748450 62748504 -134446928 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1063 209 196 0 0 chr1 62750110 62750156 -134445276 + (CAG)n Simple_repeat Simple_repeat 1 46 0 3 1063 378 0 0 0 chr1 62751043 62751085 -134444347 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1063 193 98 24 24 chr1 62752382 62752424 -134443008 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1063 396 0 0 0 chr1 62752518 62752562 -134442870 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1063 21 0 0 0 chr1 62755360 62755381 -134440051 + GC_rich Low_complexity Low_complexity 1 21 0 3 1063 272 156 0 0 chr1 62755644 62755689 -134439743 + MER57-int LTR ERV1 7202 7246 -291 3 1063 405 0 0 0 chr1 62755899 62755944 -134439488 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1063 238 277 32 97 chr1 62757049 62757173 -134438259 + MIR SINE MIR 21 136 -126 3 1063 668 18 0 60 chr1 62757836 62757953 -134437479 + (GGAGA)n Simple_repeat Simple_repeat 2 111 0 3 1063 36 0 0 0 chr1 62759095 62759131 -134436301 + AT_rich Low_complexity Low_complexity 1 36 0 3 1063 1080 254 152 0 chr1 62760712 62760929 -134434503 - Tigger7 DNA MER2_type 0 2491 2254 3 1063 213 65 0 0 chr1 62760929 62760960 -134434472 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3 1063 1080 254 152 0 chr1 62760960 62761085 -134434347 - Tigger7 DNA MER2_type -238 2253 2098 3 1063 947 220 0 47 chr1 62761719 62761910 -134433522 + B3 SINE B2 1 182 -34 3 1063 417 191 0 0 chr1 62765226 62765341 -134430091 + (TG)n Simple_repeat Simple_repeat 1 115 0 3 1063 218 298 78 78 chr1 62766011 62766113 -134429319 - L3 LINE CR1 -69 4420 4319 3 1063 508 286 35 14 chr1 62766222 62766364 -134429068 - MIR SINE MIR -42 220 76 3 1063 342 0 0 0 chr1 62768811 62768849 -134426583 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1063 383 245 28 38 chr1 62769275 62769381 -134426051 - B3A SINE B2 -38 160 56 3 1063 243 0 0 0 chr1 62771257 62771284 -134424148 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1063 706 89 40 23 chr1 62773371 62773544 -134421888 + (CA)n Simple_repeat Simple_repeat 2 177 0 3 1063 396 177 43 5 chr1 62773608 62773821 -134421611 + (CA)n Simple_repeat Simple_repeat 1 221 0 3 1063 261 0 0 0 chr1 62774160 62774189 -134421243 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1063 393 22 0 0 chr1 62774401 62774447 -134420985 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 1063 260 71 71 0 chr1 62774634 62774690 -134420742 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1063 288 0 0 0 chr1 62776011 62776043 -134419389 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1063 875 93 35 6 chr1 62776929 62777101 -134418331 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 3 1063 270 0 0 0 chr1 62777101 62777131 -134418301 + (CATA)n Simple_repeat Simple_repeat 1 30 0 3 1063 568 289 106 10 chr1 62777149 62777348 -134418084 + ID_B1 SINE B4 3 220 -4 3 1063 251 260 51 25 chr1 62777688 62777767 -134417665 - MIR SINE MIR -69 193 113 3 1063 326 324 80 38 chr1 62778443 62778655 -134416777 + MIRb SINE MIR 42 262 -6 3 1063 434 65 16 0 chr1 62780045 62780107 -134415325 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1063 29 0 0 0 chr1 62781452 62781481 -134413951 + AT_rich Low_complexity Low_complexity 1 29 0 3 1063 234 125 0 0 chr1 62781620 62781668 -134413764 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 3 1063 400 233 58 0 chr1 62781668 62781754 -134413678 - PB1D10 SINE Alu 0 117 27 3 1063 359 317 48 126 chr1 62782044 62782354 -134413078 - L1ME4a LINE L1 -230 5894 5609 3 1063 183 200 67 0 chr1 62782547 62782592 -134412840 - MIRb SINE MIR -20 248 201 3 1063 360 0 0 0 chr1 62782703 62782743 -134412689 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1063 260 293 195 57 chr1 62782763 62783009 -134412423 - B4 SINE B4 -11 281 2 3 1064 257 333 26 0 chr1 62784371 62784485 -134410947 - MIR SINE MIR -51 211 95 3 1064 182 306 9 101 chr1 62785963 62786072 -134409360 + L4 LINE RTE 1695 1793 -236 3 1064 688 211 7 47 chr1 62787970 62788119 -134407313 - B1F SINE Alu -6 143 1 3 1064 218 32 32 0 chr1 62788462 62788493 -134406939 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1064 492 32 0 0 chr1 62790334 62790396 -134405036 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1064 243 0 0 0 chr1 62790396 62790422 -134405010 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1064 432 91 0 0 chr1 62790680 62790746 -134404686 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1064 985 246 15 0 chr1 62790984 62791179 -134404253 - MTE2a LTR MaLR -179 200 3 3 1064 416 342 49 24 chr1 62791557 62791777 -134403655 + MIRc SINE MIR 1 224 -44 3 1064 185 271 0 0 chr1 62792586 62792634 -134402798 - MIRb SINE MIR -12 256 209 3 1064 255 103 0 0 chr1 62795467 62795506 -134399926 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1064 296 48 0 23 chr1 62801430 62801473 -134393959 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 3 1064 452 188 18 0 chr1 62801473 62801585 -134393847 + (CATA)n Simple_repeat Simple_repeat 1 114 0 3 1064 405 0 0 0 chr1 62802501 62802546 -134392886 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1064 459 0 0 0 chr1 62802546 62802596 -134392836 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1064 286 271 89 77 chr1 62804098 62804266 -134391166 - MIR3 SINE MIR -32 176 7 3 1064 506 283 36 27 chr1 62804734 62804883 -134390549 + B1F SINE Alu 1 149 0 3 1064 216 0 0 0 chr1 62805257 62805281 -134390151 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1064 263 55 0 69 chr1 62805783 62805841 -134389591 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1064 260 274 79 114 chr1 62808697 62808837 -134386595 - MIRb SINE MIR -130 138 4 3 1064 296 276 47 19 chr1 62809040 62809147 -134386285 - MIRc SINE MIR -157 111 2 3 1064 274 357 101 13 chr1 62809771 62809930 -134385502 - MIR SINE MIR -75 187 15 3 1064 193 233 14 99 chr1 62813225 62813303 -134382129 - MIRc SINE MIR -52 156 84 3 1064 21 0 0 0 chr1 62816708 62816729 -134378703 + AT_rich Low_complexity Low_complexity 1 21 0 3 1064 459 0 0 0 chr1 62819270 62819321 -134376111 + (CAGG)n Simple_repeat Simple_repeat 2 52 0 3 1064 745 259 91 5 chr1 62819338 62819559 -134375873 - MER63D DNA AcHobo -806 255 16 3 1064 438 262 55 28 chr1 62822313 62822458 -134372974 + B1F SINE Alu 1 149 0 3 1064 258 220 0 0 chr1 62822458 62822517 -134372915 + A-rich Low_complexity Low_complexity 1 59 0 3 1064 239 219 24 110 chr1 62822520 62822602 -134372830 + ID4_ SINE ID 2 76 -7 3 1064 303 161 0 0 chr1 62822612 62822668 -134372764 + GA-rich Low_complexity Low_complexity 3 58 0 3 1064 1262 173 4 22 chr1 62823201 62823431 -134372001 - URR1A DNA MER1_type 0 226 1 3 1064 596 192 17 11 chr1 62824992 62825166 -134370266 + CT-rich Low_complexity Low_complexity 6 180 0 3 1064 279 222 0 0 chr1 62825389 62825454 -134369978 - B4 SINE B4 -227 65 1 3 1064 331 327 102 34 chr1 62825994 62826200 -134369232 - MIR SINE MIR -14 248 29 3 1064 198 325 36 12 chr1 62826176 62826260 -134369172 + MIRb SINE MIR 45 130 -138 3 1064 394 226 24 0 chr1 62826283 62826367 -134369065 + PB1D10 SINE Alu 10 95 -22 3 1064 219 189 0 0 chr1 62826376 62826429 -134369003 + GA-rich Low_complexity Low_complexity 1 53 0 3 1064 186 43 0 0 chr1 62827507 62827530 -134367902 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 3 1064 599 239 111 42 chr1 62827634 62827778 -134367654 + RSINE1 SINE B4 12 165 0 3 1064 318 316 104 37 chr1 62828193 62828357 -134367075 + MIRc SINE MIR 93 267 -1 3 1064 269 290 50 105 chr1 62829565 62829637 -134365795 + MT2B LTR ERVL 86 254 -345 3 1064 398 318 28 0 chr1 62829637 62829648 -134365784 + ID SINE ID 70 83 -141 3 1064 509 278 0 34 chr1 62829648 62829767 -134365665 + PB1D10 SINE Alu 3 117 0 3 1064 262 299 19 76 chr1 62831054 62831159 -134364273 + L2c LINE L2 3289 3387 0 3 1064 297 0 0 0 chr1 62834423 62834456 -134360976 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1064 419 0 0 19 chr1 62835353 62835405 -134360027 + (CTTG)n Simple_repeat Simple_repeat 4 54 0 3 1064 629 304 38 11 chr1 62837358 62837544 -134357888 - MER58A DNA MER1_type -6 218 28 3 1064 189 214 0 0 chr1 62838510 62838552 -134356880 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 3 1064 2074 135 24 6 chr1 62839010 62839346 -134356086 - Lx4A LINE L1 0 7058 6717 3 1064 897 40 24 0 chr1 62840036 62840162 -134355270 + (GA)n Simple_repeat Simple_repeat 1 129 0 3 1064 690 178 96 0 chr1 62840199 62840334 -134355098 + B1F SINE Alu 1 148 -1 3 1064 503 78 13 0 chr1 62841765 62841842 -134353590 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1064 338 61 0 20 chr1 62841842 62841892 -134353540 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1064 283 199 79 46 chr1 62841957 62842073 -134353359 + MIRc SINE MIR 54 171 -91 3 1064 180 214 0 0 chr1 62842175 62842231 -134353201 + T-rich Low_complexity Low_complexity 1 56 0 3 1064 223 241 0 36 chr1 62842785 62842863 -134352569 + T-rich Low_complexity Low_complexity 1 75 0 3 1064 252 0 0 0 chr1 62843086 62843114 -134352318 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1064 213 196 0 0 chr1 62843547 62843593 -134351839 + A-rich Low_complexity Low_complexity 1 46 0 3 1064 235 289 54 117 chr1 62844147 62844370 -134351062 - Helitron3Na_Mam RC Helitron -59 427 219 3 1064 745 50 8 32 chr1 62845018 62845141 -134350291 + (TCTCC)n Simple_repeat Simple_repeat 2 121 0 3 1064 687 25 0 0 chr1 62846027 62846108 -134349324 + (GGGA)n Simple_repeat Simple_repeat 1 81 0 4 1064 189 74 0 0 chr1 62846332 62846359 -134349073 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 4 1064 567 0 0 0 chr1 62847911 62847974 -134347458 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1064 495 0 0 0 chr1 62848737 62848792 -134346640 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1064 189 94 0 0 chr1 62851568 62851600 -134343832 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1064 204 235 59 0 chr1 62852302 62852353 -134343079 - L3b LINE CR1 -318 164 111 4 1064 448 272 181 53 chr1 62853588 62853759 -134341673 + B3A SINE B2 1 193 -5 4 1064 528 16 0 0 chr1 62854364 62854425 -134341007 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 4 1064 1026 51 6 44 chr1 62854426 62854609 -134340823 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 4 1064 717 287 58 68 chr1 62855866 62856158 -134339274 + B4 SINE B4 1 289 -3 4 1064 229 33 197 0 chr1 62856791 62856852 -134338580 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 4 1064 38 0 0 0 chr1 62858431 62858469 -134336963 + AT_rich Low_complexity Low_complexity 1 38 0 4 1064 21 0 0 0 chr1 62859081 62859102 -134336330 + AT_rich Low_complexity Low_complexity 1 21 0 4 1064 503 261 45 13 chr1 62860198 62860353 -134335079 - MLT1C LTR MaLR -8 459 300 4 1064 601 184 5 38 chr1 62860361 62860547 -134334885 + CT-rich Low_complexity Low_complexity 1 180 0 4 1064 314 246 58 50 chr1 62860548 62860668 -134334764 - MLT1C LTR MaLR -159 231 111 4 1064 317 300 22 0 chr1 62860948 62861038 -134334394 + BC1_Mm scRNA scRNA 2 93 -59 4 1064 735 95 0 0 chr1 62861087 62861192 -134334240 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 4 1064 328 293 13 0 chr1 62861197 62861272 -134334160 - ID4_ SINE ID -6 77 2 4 1064 645 293 70 0 chr1 62861290 62861371 -134334061 + ID_B1 SINE B4 1 92 -132 4 1064 271 304 97 97 chr1 62861371 62861464 -134333968 + B1_Mus2 SINE Alu 1 98 -49 4 1064 544 29 78 0 chr1 62861464 62861567 -134333865 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1064 342 0 0 0 chr1 62861567 62861604 -134333828 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1064 271 304 97 97 chr1 62861604 62861633 -134333799 + B1_Mus2 SINE Alu 99 123 -24 4 1064 484 255 94 50 chr1 62861633 62861835 -134333597 - MIRb SINE MIR -24 244 34 4 1064 225 0 0 0 chr1 62862273 62862298 -134333134 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1064 405 0 0 0 chr1 62863535 62863580 -134331852 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1064 813 11 0 0 chr1 62864152 62864246 -134331186 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 1064 264 333 13 13 chr1 62865311 62865390 -134330042 + MER81 DNA AcHobo 3 81 -33 4 1064 483 336 116 28 chr1 62865392 62865719 -134329713 - MLT1A LTR MaLR -4 370 15 4 1064 446 320 40 6 chr1 62866024 62866200 -134329232 + MER5A DNA MER1_type 8 189 0 4 1064 279 257 0 0 chr1 62866208 62866282 -134329150 - L1M4 LINE L1 -881 5265 5192 4 1064 3161 158 120 2 chr1 62866311 62866920 -134328512 - Lx9 LINE L1 -8 7636 6956 4 1064 315 198 0 138 chr1 62866920 62867014 -134328418 + B3A SINE B2 118 198 0 4 1064 306 0 0 0 chr1 62867880 62867914 -134327518 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1064 282 73 0 0 chr1 62867994 62868035 -134327397 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1064 183 306 41 14 chr1 62868121 62868194 -134327238 - L2a LINE L2 -252 3174 3100 4 1064 339 25 0 0 chr1 62869370 62869410 -134326022 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1064 203 204 20 20 chr1 62870040 62870090 -134325342 + CT-rich Low_complexity Low_complexity 5 54 0 4 1064 257 307 71 35 chr1 62870206 62870375 -134325057 + MIR3 SINE MIR 7 181 -27 4 1064 1562 277 107 33 chr1 62870645 62871280 -134324152 + Lx9 LINE L1 6958 7639 -5 4 1064 1288 263 117 36 chr1 62871277 62871857 -134323575 + L1MB4 LINE L1 5546 6172 -8 4 1064 519 60 0 0 chr1 62871909 62871976 -134323456 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1064 256 355 0 13 chr1 62872050 62872127 -134323305 - RSINE1 SINE B4 -87 78 3 4 1064 272 300 86 32 chr1 62872149 62872242 -134323190 + MER53 DNA hAT 91 188 -5 4 1064 279 0 0 0 chr1 62872304 62872335 -134323097 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1064 269 200 360 0 chr1 62875129 62875204 -134320228 + RSINE1 SINE B4 43 144 -21 4 1064 369 123 0 0 chr1 62875210 62875275 -134320157 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1064 785 78 54 27 chr1 62875351 62875611 -134319821 + (TAGA)n Simple_repeat Simple_repeat 1 266 0 4 1064 339 65 0 0 chr1 62875919 62875965 -134319467 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1064 261 0 0 0 chr1 62876457 62876486 -134318946 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1064 269 194 125 0 chr1 62877550 62877622 -134317810 - MER45A DNA Tip100 -1 177 97 4 1064 561 229 9 0 chr1 62877623 62877732 -134317700 + PB1D10 SINE Alu 1 110 -7 4 1064 200 111 0 22 chr1 62877970 62878016 -134317416 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 4 1064 1137 198 145 61 chr1 62878579 62878923 -134316509 - ORR1D1 LTR MaLR -1 373 1 4 1064 218 304 159 9 chr1 62878942 62879055 -134316377 - MIR SINE MIR -116 146 17 4 1064 1121 216 0 0 chr1 62879440 62879648 -134315784 + B3 SINE B2 1 208 -8 4 1064 641 271 31 67 chr1 62879672 62879897 -134315535 + B4A SINE B4 1 217 -75 4 1064 1419 206 177 12 chr1 62879935 62880279 -134315153 - MTD LTR MaLR -7 412 12 4 1064 248 0 31 0 chr1 62880289 62880321 -134315111 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1064 4077 222 90 52 chr1 62880323 62880577 -134314855 - MTD-int LTR MaLR 0 1258 939 4 1064 949 91 240 0 chr1 62880577 62880731 -134314701 + B2_Mm2 SINE B2 2 192 -3 4 1064 4077 222 90 52 chr1 62880731 62881688 -134313744 - MTD-int LTR MaLR -320 938 1 4 1064 1773 222 49 27 chr1 62881688 62882070 -134313362 - MTD LTR MaLR 0 419 21 4 1064 195 42 0 0 chr1 62882070 62882094 -134313338 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1064 1773 222 49 27 chr1 62882094 62882119 -134313313 - MTD LTR MaLR -399 20 3 4 1064 303 28 0 0 chr1 62882215 62882251 -134313181 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1064 506 180 285 29 chr1 62882821 62882993 -134312439 + B3 SINE B2 1 216 0 4 1064 26 50 0 0 chr1 62883362 62883402 -134312030 + AT_rich Low_complexity Low_complexity 1 40 0 4 1064 342 224 53 0 chr1 62883811 62883887 -134311545 + B4A SINE B4 3 82 -210 4 1064 478 261 0 77 chr1 62883890 62884148 -134311284 + (CA)n Simple_repeat Simple_repeat 1 238 0 4 1064 204 259 0 36 chr1 62884177 62884345 -134311087 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1064 180 297 101 74 chr1 62884418 62884567 -134310865 - MER5A DNA MER1_type -1 188 36 4 1064 361 324 35 14 chr1 62884787 62884928 -134310504 - YREP_Mm Unknown Unknown -1488 324 181 4 1064 500 248 68 0 chr1 62884815 62884932 -134310500 + ID_B1 SINE B4 100 224 0 4 1064 216 307 137 10 chr1 62884936 62885038 -134310394 + B4A SINE B4 2 116 -176 4 1064 399 320 8 32 chr1 62885046 62885172 -134310260 - ID_B1 SINE B4 -18 206 84 4 1064 502 229 183 0 chr1 62885475 62885628 -134309804 + MIR SINE MIR 82 262 0 4 1064 528 16 0 0 chr1 62885971 62886032 -134309400 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1064 492 18 0 0 chr1 62886032 62886089 -134309343 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 4 1064 209 167 0 36 chr1 62887918 62887974 -134307458 + (TTAA)n Simple_repeat Simple_repeat 4 57 0 4 1064 723 200 27 20 chr1 62888550 62888698 -134306734 + B1F2 SINE Alu 1 149 0 4 1064 1100 273 111 6 chr1 62888854 62889197 -134306235 + MTE2b LTR MaLR 1 379 0 4 1064 540 45 0 0 chr1 62890472 62890539 -134304893 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1064 333 367 98 39 chr1 62890582 62890970 -134304462 + L1MC4a LINE L1 5525 5935 -1947 4 1064 258 273 126 9 chr1 62891132 62891243 -134304189 + MER2B DNA MER2_type 213 336 0 4 1064 924 59 39 0 chr1 62891419 62891572 -134303860 + (TAGA)n Simple_repeat Simple_repeat 2 160 0 4 1064 281 219 16 0 chr1 62893076 62893140 -134302292 + L1MB5 LINE L1 4989 5053 -1093 4 1064 648 246 14 0 chr1 62893233 62893371 -134302061 + B1_Mur2 SINE Alu 2 141 -8 4 1064 231 283 117 117 chr1 62893476 62893740 -134301692 + ORR1E LTR MaLR 96 359 0 4 1064 491 257 74 98 chr1 62893749 62893894 -134301538 + L1MB5 LINE L1 5061 5202 -944 4 1064 865 278 29 85 chr1 62893894 62894271 -134301161 + ORR1E LTR MaLR 1 356 -3 4 1064 1316 245 40 31 chr1 62894271 62894378 -134301054 + L1MB5 LINE L1 5197 5305 -841 4 1064 693 0 0 0 chr1 62894378 62894455 -134300977 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1064 1316 261 128 18 chr1 62894455 62894967 -134300465 + L1MB5 LINE L1 5306 5878 -296 4 1064 1020 277 23 23 chr1 62894987 62895253 -134300179 + B4A SINE B4 8 273 -19 4 1064 378 0 0 0 chr1 62895256 62895298 -134300134 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1064 468 275 40 0 chr1 62895337 62895486 -134299946 + L1MB5 LINE L1 5895 6049 -125 4 1064 483 315 0 33 chr1 62896245 62896396 -134299036 - MLT1J2 LTR MaLR -262 186 41 4 1064 321 254 0 0 chr1 62896501 62896572 -134298860 + ID4_ SINE ID 2 72 -11 4 1064 209 83 0 27 chr1 62897463 62897500 -134297932 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1064 759 22 0 0 chr1 62897501 62897590 -134297842 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1064 372 228 0 0 chr1 62899746 62899891 -134295541 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 1064 222 309 60 75 chr1 62899960 62900093 -134295339 + MIRm SINE MIR 14 144 -132 4 1064 249 219 0 8 chr1 62900789 62900865 -134294567 - MLT1H LTR MaLR -19 536 463 4 1064 424 346 97 52 chr1 62900868 62901136 -134294296 - MLT1H LTR MaLR -210 339 60 4 1064 667 299 69 18 chr1 62901158 62901413 -134294019 + B4 SINE B4 1 269 -23 4 1064 252 0 0 0 chr1 62901413 62901441 -134293991 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1064 667 299 69 18 chr1 62901441 62901461 -134293971 + B4 SINE B4 270 289 -3 4 1064 885 89 0 0 chr1 62901502 62901626 -134293806 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 4 1064 396 125 0 0 chr1 62902557 62902621 -134292811 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 4 1064 752 179 14 14 chr1 62902628 62902775 -134292657 - B1_Mus1 SINE Alu 0 148 2 4 1064 364 292 44 75 chr1 62902633 62902792 -134292640 - B4 SINE B4 -71 221 68 4 1064 290 296 78 48 chr1 62903096 62903263 -134292169 - MLT1A1 LTR MaLR -236 172 1 5 1064 2242 207 33 61 chr1 62903366 62903478 -134291954 - Lx3B LINE L1 -907 6143 6031 5 1064 2966 92 60 7 chr1 62903478 62903924 -134291508 - Lx3B LINE L1 -4 6969 6500 5 1064 4556 77 21 39 chr1 62903924 62904723 -134290709 - Lx3B LINE L1 -941 6032 5253 5 1064 495 202 0 0 chr1 62905148 62905252 -134290180 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 1064 378 0 0 0 chr1 62906815 62906857 -134288575 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1064 270 0 0 0 chr1 62906857 62906886 -134288546 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1064 225 178 0 0 chr1 62906893 62906938 -134288494 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1064 201 303 131 0 chr1 62907823 62907922 -134287510 - MER5A DNA MER1_type -23 166 55 5 1064 694 284 91 43 chr1 62908281 62908631 -134286801 - L5 LINE RTE -4 2261 1895 5 1064 418 272 46 27 chr1 62908757 62909021 -134286411 + L1MEc LINE L1 3005 3146 -3941 5 1064 220 204 37 0 chr1 62909108 62909162 -134286270 + A-rich Low_complexity Low_complexity 2 57 0 5 1064 964 260 93 17 chr1 62909170 62909642 -134285790 + L1MEc LINE L1 5954 6473 -571 5 1064 238 261 39 63 chr1 62909930 62910057 -134285375 + MLT1A1 LTR MaLR 3 126 -282 5 1064 246 250 27 14 chr1 62910329 62910402 -134285030 + MTEb LTR MaLR 294 367 -12 5 1064 984 92 0 0 chr1 62910635 62910776 -134284656 + (CTTTG)n Simple_repeat Simple_repeat 3 143 0 5 1064 414 0 0 0 chr1 62910857 62910903 -134284529 + (CATA)n Simple_repeat Simple_repeat 4 49 0 5 16 41032 19 1 6 chr1 62911479 62917544 -134277888 - L1Md_T LINE L1 0 6582 621 5 1065 376 204 62 90 chr1 62918416 62918561 -134276871 - B1F1 SINE Alu -8 141 1 5 1065 2157 96 16 3 chr1 62918814 62919129 -134276303 + ORR1A2 LTR MaLR 1 319 -8 5 1065 231 140 59 20 chr1 62919203 62919254 -134276178 + MTE2b LTR MaLR 300 352 -27 5 1065 414 0 0 0 chr1 62919310 62919356 -134276076 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1065 276 305 106 26 chr1 62919749 62919927 -134275505 + MIRb SINE MIR 43 236 -32 5 1065 614 251 80 83 chr1 62920583 62920896 -134274536 - L1MB5 LINE L1 -10 6164 5853 5 1065 207 0 0 0 chr1 62920976 62920999 -134274433 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1065 692 261 94 22 chr1 62921029 62921296 -134274136 - B4A SINE B4 -6 286 1 5 1065 492 18 0 0 chr1 62921424 62921481 -134273951 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1065 253 347 20 34 chr1 62921585 62921734 -134273698 + L2b LINE L2 3229 3375 0 5 1065 185 307 93 0 chr1 62924157 62924232 -134271200 - L2 LINE L2 -1569 1850 1769 5 1065 341 263 41 73 chr1 62924654 62924777 -134270655 + B3A SINE B2 1 119 -79 5 1065 261 317 132 76 chr1 62924871 62924930 -134270502 - HAL1 LINE L1 -220 2287 2229 5 1065 195 42 0 0 chr1 62924930 62924954 -134270478 + (CCCCCA)n Simple_repeat Simple_repeat 5 28 0 5 1065 261 317 132 76 chr1 62924954 62925132 -134270300 - HAL1 LINE L1 -279 2228 2037 5 1065 798 233 210 4 chr1 62925132 62925365 -134270067 + B4A SINE B4 2 282 -10 5 1065 261 317 132 76 chr1 62925365 62925717 -134269715 - HAL1 LINE L1 -471 2036 1664 5 1065 324 301 79 97 chr1 62925798 62926156 -134269276 + L1MB3 LINE L1 5657 6010 -168 5 1065 342 259 219 18 chr1 62926245 62926414 -134269018 + B3 SINE B2 1 203 -13 5 1065 324 317 146 23 chr1 62926573 62926744 -134268688 - B4A SINE B4 -9 283 92 5 1065 590 191 9 0 chr1 62926641 62926746 -134268686 - PB1D9 SINE Alu -10 110 5 5 1065 772 261 11 5 chr1 62926743 62926928 -134268504 - B4A SINE B4 -105 187 2 5 1065 915 289 104 42 chr1 62927560 62928080 -134267352 + L1M5 LINE L1 4616 5167 -979 5 1065 245 316 17 17 chr1 62928184 62928300 -134267132 + L1M5 LINE L1 5656 5771 -469 5 1065 23 0 0 0 chr1 62928396 62928419 -134267013 + AT_rich Low_complexity Low_complexity 1 23 0 5 1065 494 231 284 33 chr1 62929110 62929218 -134266214 + ORR1D2 LTR MaLR 45 189 -195 5 1065 495 0 0 0 chr1 62929218 62929273 -134266159 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1065 515 192 90 11 chr1 62929273 62929421 -134266011 + ORR1D2 LTR MaLR 190 384 0 5 1065 351 60 0 0 chr1 62929593 62929643 -134265789 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1065 244 323 100 0 chr1 62930366 62930496 -134264936 - LTR16C LTR ERVL -260 229 87 5 1065 232 272 120 0 chr1 62930931 62931023 -134264409 + MIR3 SINE MIR 106 208 0 5 1065 371 68 17 0 chr1 62931223 62931282 -134264150 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1065 834 86 0 0 chr1 62932317 62932433 -134262999 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 5 1065 310 232 212 31 chr1 62933050 62933210 -134262222 - L1MA6 LINE L1 -239 6061 5873 5 1065 1064 97 18 6 chr1 62933231 62933397 -134262035 + B2_Mm2 SINE B2 2 169 -26 5 1065 537 280 137 21 chr1 62933490 62933826 -134261606 - L1MA6 LINE L1 -519 5793 5419 5 1065 274 331 14 68 chr1 62933979 62934125 -134261307 + MLT1A1 LTR MaLR 271 408 0 5 1065 483 194 0 0 chr1 62934129 62934227 -134261205 + GA-rich Low_complexity Low_complexity 3 100 0 5 1065 963 239 19 27 chr1 62934832 62935094 -134260338 + RCHARR1 DNA MER1_type 237 496 -478 5 1065 1356 274 12 7 chr1 62935095 62935506 -134259926 + L1_Mur3 LINE L1 4435 4847 -1033 5 1065 269 127 36 0 chr1 62935539 62935594 -134259838 + T-rich Low_complexity Low_complexity 2 58 0 5 1065 9514 204 25 77 chr1 62935728 62935988 -134259444 - Lx7 LINE L1 0 7696 7470 5 1065 1137 69 35 0 chr1 62935988 62936162 -134259270 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1065 9514 204 25 77 chr1 62936162 62936180 -134259252 - Lx7 LINE L1 -227 7469 7469 5 1065 936 123 0 0 chr1 62936180 62936326 -134259106 + (GGAA)n Simple_repeat Simple_repeat 4 149 0 5 1065 9514 179 43 53 chr1 62936326 62939438 -134255994 - Lx7 LINE L1 -227 7469 4352 5 1065 2230 130 20 9 chr1 62939441 62939791 -134255641 + ORR1B1 LTR MaLR 41 394 0 5 1065 10187 158 31 76 chr1 62939791 62941846 -134253586 + ORR1B1-int LTR MaLR 1 1963 0 5 1065 2223 131 8 11 chr1 62941853 62942208 -134253224 + ORR1B1 LTR MaLR 41 394 0 5 1065 972 196 35 0 chr1 62942208 62942407 -134253025 - Lx7 LINE L1 -1518 4362 4157 5 1065 5630 120 21 90 chr1 62942400 62942736 -134252696 - Lx7 LINE L1 -3625 2255 1932 5 1065 1844 184 74 6 chr1 62942736 62943075 -134252357 + ORR1B2 LTR MaLR 3 364 -3 5 1065 6603 157 21 50 chr1 62943075 62944995 -134250437 - Lx7 LINE L1 -3949 1931 86 5 1065 1960 286 48 40 chr1 62944993 62946014 -134249418 + L1MB4 LINE L1 4918 5996 -184 5 1065 1899 223 24 72 chr1 62946100 62946377 -134249055 + RCHARR1 DNA MER1_type 480 754 -220 5 1065 610 230 120 26 chr1 62946377 62946569 -134248863 + B3 SINE B2 2 211 -5 5 1065 1899 223 24 72 chr1 62946569 62946788 -134248644 + RCHARR1 DNA MER1_type 755 952 -22 5 1065 3495 74 12 17 chr1 62946848 62947329 -134248103 - L1_Mus3 LINE L1 -1 6637 6159 5 1065 325 317 30 0 chr1 62947464 62947565 -134247867 + PB1D10 SINE Alu 1 104 -13 5 1065 450 0 0 0 chr1 62947565 62947615 -134247817 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1065 312 262 19 19 chr1 62947615 62947720 -134247712 + GA-rich Low_complexity Low_complexity 2 106 0 5 1065 522 307 111 0 chr1 62947724 62947877 -134247555 + B4A SINE B4 6 175 -117 5 1065 320 322 107 11 chr1 62948101 62948289 -134247143 - MLT1J2 LTR MaLR -204 244 64 5 1065 1079 324 52 32 chr1 62948605 62949010 -134246422 - MamRep605 Unknown Unknown -44 832 420 5 1065 404 242 82 63 chr1 62949769 62949928 -134245504 - L1ME3A LINE L1 -83 6090 5929 5 1065 293 319 86 29 chr1 62949952 62950126 -134245306 - L1ME3A LINE L1 -395 5845 5662 5 1065 283 293 131 0 chr1 62950139 62950238 -134245194 - MLT1E1A LTR MaLR -12 668 557 5 1065 788 152 0 23 chr1 62950318 62950446 -134244986 + B1_Mur3 SINE Alu 2 126 -23 5 1065 868 246 112 36 chr1 62950581 62951072 -134244360 - Lx8 LINE L1 -2 7471 6882 5 1065 225 257 38 75 chr1 62951751 62951831 -134243601 + L1M2a LINE L1 492 568 -6600 5 1065 304 290 0 0 chr1 62953435 62953504 -134241928 + ID4_ SINE ID 4 72 -11 5 1065 201 119 48 0 chr1 62953683 62953725 -134241707 + A-rich Low_complexity Low_complexity 6 49 0 5 1065 201 277 30 15 chr1 62953820 62953886 -134241546 + MIR SINE MIR 51 117 -91 5 1065 279 0 0 0 chr1 62954237 62954268 -134241164 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1065 203 304 18 0 chr1 62955778 62955834 -134239598 - MER5A DNA MER1_type -83 106 50 5 1065 356 316 125 20 chr1 62957492 62957692 -134237740 + MER20B DNA MER1_type 127 347 -436 5 1065 460 292 80 27 chr1 62957698 62957923 -134237509 - L1MB5 LINE L1 0 6174 5938 5 1065 312 212 150 58 chr1 62957930 62958050 -134237382 + MER20B DNA MER1_type 652 782 -1 5 1065 21 0 0 0 chr1 62958733 62958754 -134236678 + AT_rich Low_complexity Low_complexity 1 21 0 5 1065 1227 188 0 0 chr1 62958766 62958973 -134236459 + B3 SINE B2 1 207 -9 5 1065 352 292 89 124 chr1 62959524 62959998 -134235434 + MLT1G3 LTR MaLR 73 557 -38 5 1065 892 210 62 0 chr1 62960034 62960229 -134235203 + B3 SINE B2 10 216 0 5 1065 236 276 23 126 chr1 62960265 62960352 -134235080 + B3A SINE B2 3 80 -118 5 1065 23 0 0 0 chr1 62960988 62961011 -134234421 + AT_rich Low_complexity Low_complexity 1 23 0 5 1065 971 134 0 13 chr1 62961899 62962050 -134233382 + B1_Mur3 SINE Alu 1 149 0 5 1065 188 370 45 50 chr1 62962257 62962456 -134232976 + L2c LINE L2 2938 3135 -252 5 1065 359 327 10 0 chr1 62962653 62962757 -134232675 + PB1D10 SINE Alu 1 105 -12 5 1065 411 21 0 0 chr1 62962770 62962818 -134232614 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1065 548 71 30 10 chr1 62962932 62963032 -134232400 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 5 1065 246 191 0 0 chr1 62963232 62963274 -134232158 + MER3 DNA MER1_type 10 51 -158 5 1065 583 262 51 45 chr1 62963416 62963572 -134231860 + MER3 DNA MER1_type 53 209 0 5 1065 606 14 0 0 chr1 62964256 62964327 -134231105 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1065 228 377 71 18 chr1 62964467 62964637 -134230795 + LTR16A LTR ERVL 172 350 -101 5 1065 481 366 30 26 chr1 62964955 62965258 -134230174 + HERV16-int LTR ERVL 278 581 -4415 5 1065 928 51 0 0 chr1 62965659 62965776 -134229656 + B1_Mm SINE Alu 31 147 0 5 1065 361 344 31 13 chr1 62965789 62965938 -134229494 + HERV16-int LTR ERVL 1013 1166 -3830 5 1065 456 319 110 34 chr1 62965938 62966201 -134229231 + B4A SINE B4 1 283 -9 5 1065 327 284 12 12 chr1 62966708 62966790 -134228642 + HERV16-int LTR ERVL 1756 1837 -3159 5 1065 439 226 44 62 chr1 62966799 62966912 -134228520 - PB1D7 SINE Alu 0 120 10 5 1065 277 286 88 48 chr1 62967123 62967248 -134228184 + HERV16-int LTR ERVL 2055 2184 -2812 5 1065 280 253 107 0 chr1 62967358 62967433 -134227999 + Charlie5 DNA MER1_type 17 99 -2525 5 1065 371 250 117 18 chr1 62967429 62967592 -134227840 + Charlie5 DNA MER1_type 2215 2393 -231 5 1065 235 286 25 25 chr1 62967691 62967770 -134227662 + PB1 SINE Alu 29 107 -20 5 1065 414 224 60 8 chr1 62967781 62967898 -134227534 + Charlie5 DNA MER1_type 2484 2606 -18 5 1065 255 325 56 38 chr1 62967922 62968082 -134227350 + HERV16-int LTR ERVL 2335 2497 -2499 5 1065 229 370 46 30 chr1 62968218 62968349 -134227083 + MIRb SINE MIR 84 216 -52 5 1065 771 294 26 42 chr1 62968712 62969021 -134226411 + Lx8 LINE L1 7164 7467 -6 6 1065 306 0 0 0 chr1 62970038 62970072 -134225360 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1065 405 151 0 0 chr1 62970407 62970494 -134224938 + GA-rich Low_complexity Low_complexity 2 88 0 6 1065 462 79 0 0 chr1 62970494 62970557 -134224875 + (CAGG)n Simple_repeat Simple_repeat 1 63 0 6 1065 409 201 46 146 chr1 62970633 62970826 -134224606 + MLT2B1 LTR ERVL 320 507 -60 6 1065 784 103 22 44 chr1 62971129 62971312 -134224120 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 6 1065 372 242 0 0 chr1 62971452 62971584 -134223848 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 1065 333 324 79 7 chr1 62971636 62971776 -134223656 + MIRb SINE MIR 19 168 -100 6 1065 22 0 0 0 chr1 62971840 62971862 -134223570 + AT_rich Low_complexity Low_complexity 1 22 0 6 1065 472 230 57 171 chr1 62971862 62972072 -134223360 + B3 SINE B2 2 191 -25 6 1065 462 284 116 15 chr1 62972096 62972293 -134223139 + L1MC LINE L1 3828 4040 -2106 6 1065 233 224 35 0 chr1 62972325 62972383 -134223049 + L1MC LINE L1 4101 4160 -1980 6 1065 22 35 0 0 chr1 62972522 62972551 -134222881 + AT_rich Low_complexity Low_complexity 1 29 0 6 1065 545 230 131 38 chr1 62973056 62973323 -134222109 - B4A SINE B4 0 292 1 6 1065 245 236 42 0 chr1 62974301 62974373 -134221059 + L1ME4a LINE L1 6040 6114 -10 6 1065 961 64 29 0 chr1 62975358 62975498 -134219934 + (TTTC)n Simple_repeat Simple_repeat 4 147 0 6 1065 607 242 126 5 chr1 62975745 62975936 -134219496 + ID_B1 SINE B4 3 216 -8 6 1065 246 225 0 14 chr1 62977010 62977082 -134218350 + L1ME4a LINE L1 6046 6116 -8 6 1065 235 295 12 25 chr1 62977362 62977442 -134217990 - ID4 SINE ID -2 81 3 6 1065 184 353 58 16 chr1 62978582 62978703 -134216729 - MIRb SINE MIR -71 197 72 6 1065 420 122 0 0 chr1 62978884 62978966 -134216466 + (TCTG)n Simple_repeat Simple_repeat 1 82 0 6 1065 565 190 172 0 chr1 62978966 62979082 -134216350 - B1_Mur2 SINE Alu -12 137 2 6 1065 236 185 19 0 chr1 62979119 62979173 -134216259 + GA-rich Low_complexity Low_complexity 2 56 0 6 1065 24 0 0 0 chr1 62980578 62980602 -134214830 + AT_rich Low_complexity Low_complexity 1 24 0 6 1065 522 70 0 0 chr1 62982357 62982428 -134213004 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 6 1065 535 256 23 30 chr1 62982430 62982563 -134212869 - RSINE1 SINE B4 -23 142 11 6 1065 313 288 73 27 chr1 62982619 62982765 -134212667 + L2a LINE L2 3213 3425 -1 6 1065 688 231 20 2 chr1 62983347 62983514 -134211918 + B3A SINE B2 32 198 -18 6 1065 231 36 0 0 chr1 62983514 62983542 -134211890 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1065 323 296 83 20 chr1 62984689 62984862 -134210570 - L1MB2 LINE L1 -5 6175 5989 6 1065 205 330 71 27 chr1 62984984 62985096 -134210336 - L2c LINE L2 -3 3384 3268 6 1065 369 0 0 0 chr1 62985149 62985190 -134210242 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1065 1450 318 115 22 chr1 62985219 62985904 -134209528 - Lx8 LINE L1 -39 7434 6686 6 1065 929 297 115 3 chr1 62985935 62986256 -134209176 + MLT1A0 LTR MaLR 1 357 -8 6 1065 296 352 80 90 chr1 62986584 62986884 -134208548 - LTR16E2 LTR ERVL -1 567 271 6 1065 261 280 0 0 chr1 62987089 62987139 -134208293 + ID4_ SINE ID 23 72 -11 6 1065 231 290 64 11 chr1 62987255 62987349 -134208083 + MLT1I LTR MaLR 111 209 -239 6 1065 2337 141 95 10 chr1 62987443 62987831 -134207601 - MTC LTR MaLR 0 421 1 6 1065 1117 89 7 0 chr1 62987880 62988026 -134207406 + B1_Mus2 SINE Alu 1 147 0 6 1065 844 118 0 30 chr1 62988057 62988188 -134207244 + B1_Mus2 SINE Alu 21 147 0 6 1065 243 214 52 35 chr1 62988216 62988274 -134207158 + MLT1I LTR MaLR 351 409 -2 6 1065 2123 210 70 65 chr1 62988323 62988893 -134206539 - RMER15 LTR ERVL -2 573 1 6 1065 675 227 73 83 chr1 62990308 62990500 -134204932 - B3 SINE B2 0 216 27 6 1065 21 36 0 0 chr1 62990596 62990624 -134204808 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 305 98 0 0 chr1 62990626 62990677 -134204755 - Lx9 LINE L1 -87 7557 7507 6 1065 381 144 0 0 chr1 62990677 62990767 -134204665 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1065 950 144 41 31 chr1 62990788 62990982 -134204450 - Lx9 LINE L1 -127 7517 7322 6 1065 407 229 97 51 chr1 62990989 62991164 -134204268 - RLTR15 LTR ERVK -17 342 160 6 1065 564 15 0 0 chr1 62991211 62991276 -134204156 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1065 343 276 40 10 chr1 62991309 62991408 -134204024 - Lx9 LINE L1 -313 7331 7230 6 1065 462 207 0 0 chr1 62991418 62991505 -134203927 - Lx9 LINE L1 -540 7104 7018 6 1065 849 255 38 5 chr1 62991522 62991731 -134203701 - B3 SINE B2 0 216 1 6 1065 276 268 50 67 chr1 62992921 62993041 -134202391 + PB1 SINE Alu 1 118 -9 6 1065 423 0 0 0 chr1 62993092 62993139 -134202293 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1065 258 306 54 34 chr1 62993208 62993385 -134202047 - L1ME3A LINE L1 -1996 5999 5819 6 1065 261 0 0 0 chr1 62993757 62993786 -134201646 + (CCA)n Simple_repeat Simple_repeat 2 30 0 6 1065 209 33 33 0 chr1 62995088 62995118 -134200314 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1065 1192 57 0 0 chr1 62995124 62995265 -134200167 - B1_Mus2 SINE Alu -6 141 1 6 1065 225 0 0 0 chr1 62995752 62995777 -134199655 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1065 258 106 0 0 chr1 62995778 62995825 -134199607 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1065 517 261 155 0 chr1 62995895 62996037 -134199395 - RSINE1 SINE B4 0 165 2 6 1065 647 169 32 0 chr1 62996128 62996252 -134199180 - RSINE1 SINE B4 -36 129 2 6 1065 222 255 78 0 chr1 62998596 62998647 -134196785 + B4A SINE B4 81 135 -157 6 1065 619 103 81 0 chr1 62998615 62998702 -134196730 + PB1D10 SINE Alu 19 112 -5 6 1065 238 296 59 122 chr1 62998702 62998819 -134196613 + MT2B2 LTR ERVL 183 373 -211 6 1065 887 92 8 0 chr1 62998826 62998957 -134196475 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 6 1065 419 287 17 17 chr1 62999053 62999170 -134196262 - RMER10B LTR ERVL -11 387 271 6 1065 1219 125 52 24 chr1 62999582 62999795 -134195637 + URR1A DNA MER1_type 7 225 -1 6 1065 229 141 53 53 chr1 63001157 63001232 -134194200 + (TTATA)n Simple_repeat Simple_repeat 2 76 0 1 1065 22 35 0 0 chr1 63001239 63001268 -134194164 + AT_rich Low_complexity Low_complexity 1 29 0 2 1065 227 277 0 15 chr1 63001390 63001456 -134193976 - Charlie2a DNA MER1_type -2242 619 555 3 1065 288 0 0 0 chr1 63001485 63001517 -134193915 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1065 625 308 101 50 chr1 63004267 63004743 -134190689 - MLT1D LTR MaLR -3 502 3 5 1065 295 278 137 39 chr1 63005385 63005586 -134189846 - ORR1E LTR MaLR -124 235 10 6 1065 418 311 192 41 chr1 63005851 63006263 -134189169 - Tigger13a DNA MER2_type -119 652 179 7 1065 324 221 49 61 chr1 63007826 63007908 -134187524 + ID4_ SINE ID 3 83 0 8 1065 302 236 78 11 chr1 63008064 63008154 -134187278 + B1_Mur1 SINE Alu 53 148 -1 9 1065 410 188 24 0 chr1 63011313 63011398 -134184034 + RSINE1 SINE B4 2 88 -77 1 1065 216 0 0 0 chr1 63011465 63011489 -134183943 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1065 195 42 0 0 chr1 63011555 63011579 -134183853 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1065 229 350 10 10 chr1 63011662 63011763 -134183669 + GA-rich Low_complexity Low_complexity 3 103 0 1 1065 191 88 29 0 chr1 63013544 63013578 -134181854 + (CCCCCA)n Simple_repeat Simple_repeat 4 38 0 1 1065 226 241 47 17 chr1 63013756 63013843 -134181589 - B1F SINE Alu -61 88 2 1 1065 28 29 0 0 chr1 63014418 63014453 -134180979 + AT_rich Low_complexity Low_complexity 1 35 0 1 1065 1801 157 46 19 chr1 63015625 63015942 -134179490 + ORR1B2 LTR MaLR 1 326 -41 1 1065 652 168 213 0 chr1 63015942 63016139 -134179293 + RMER4B LTR ERVK 1 239 -346 1 1065 207 69 0 0 chr1 63016148 63016177 -134179255 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1065 631 219 200 30 chr1 63016177 63016412 -134179020 + RMER4B LTR ERVK 300 574 -11 1 1065 267 136 0 0 chr1 63016427 63016471 -134178961 + ORR1B2 LTR MaLR 351 394 0 1 1065 282 346 35 76 chr1 63017235 63017336 -134178096 - MER58A DNA MER1_type -81 143 49 2 1065 887 277 147 3 chr1 63017336 63017655 -134177777 + MLT1A0 LTR MaLR 1 365 0 2 1065 282 346 35 76 chr1 63017655 63017697 -134177735 - MER58A DNA MER1_type -176 48 6 2 1065 339 154 142 26 chr1 63017937 63018050 -134177382 - Kanga1 DNA Tc2 -2 1743 1618 2 1065 363 287 0 0 chr1 63018059 63018146 -134177286 + MTEa LTR MaLR 24 110 -269 2 1065 387 0 0 0 chr1 63018199 63018242 -134177190 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1065 183 17 5 155 chr1 63018355 63018561 -134176871 + (CAGTA)n Simple_repeat Simple_repeat 4 178 0 2 1065 183 17 5 155 chr1 63018587 63018793 -134176639 + (CAGTA)n Simple_repeat Simple_repeat 4 178 0 2 1065 305 360 89 35 chr1 63018823 63019082 -134176350 + MT2A LTR ERVL 190 462 -71 2 1065 429 20 0 0 chr1 63019083 63019133 -134176299 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1065 321 47 0 0 chr1 63019133 63019175 -134176257 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1065 246 81 0 0 chr1 63019300 63019337 -134176095 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 2 1065 273 264 132 0 chr1 63019363 63019454 -134175978 - B1F SINE Alu -46 103 1 3 1065 1313 167 183 26 chr1 63019537 63019881 -134175551 - Lx4B LINE L1 -4 7054 6657 3 1065 24 0 0 0 chr1 63020456 63020480 -134174952 + AT_rich Low_complexity Low_complexity 1 24 0 3 1065 1051 155 61 10 chr1 63020485 63020681 -134174751 + MTD LTR MaLR 1 206 -213 3 1065 1702 178 23 132 chr1 63020685 63021164 -134174268 + Lx9 LINE L1 4695 5121 -726 3 1065 798 191 7 0 chr1 63021166 63021307 -134174125 + B1_Mur4 SINE Alu 3 144 -6 3 1065 189 0 0 0 chr1 63021310 63021331 -134174101 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 3 1065 275 72 0 23 chr1 63021338 63021381 -134174051 + (GGAAA)n Simple_repeat Simple_repeat 3 44 0 3 1065 2759 200 125 23 chr1 63021381 63022553 -134172879 + Lx9 LINE L1 5130 6529 -1115 3 1065 429 20 0 0 chr1 63022553 63022603 -134172829 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1065 207 0 0 0 chr1 63023815 63023838 -134171594 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1065 228 67 0 0 chr1 63024108 63024138 -134171294 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1065 440 277 115 0 chr1 63024604 63024734 -134170698 + B1F1 SINE Alu 4 148 -1 4 1065 598 254 31 22 chr1 63025033 63025262 -134170170 + RLTR15 LTR ERVK 1 231 -128 4 1065 2092 146 35 61 chr1 63025400 63025824 -134169608 - MTC LTR MaLR -8 413 1 4 1065 235 343 37 0 chr1 63026089 63026197 -134169235 + PB1D10 SINE Alu 5 116 -1 4 1065 397 299 134 62 chr1 63026324 63026645 -134168787 - MLT1A LTR MaLR -6 368 25 4 1065 829 268 32 23 chr1 63026784 63027002 -134168430 - B4A SINE B4 -72 220 1 4 1065 312 260 26 0 chr1 63027671 63027748 -134167684 + ID4_ SINE ID 5 83 0 4 1065 526 264 24 8 chr1 63027888 63028007 -134167425 + RSINE1 SINE B4 4 124 -41 4 1065 396 0 0 0 chr1 63028007 63028051 -134167381 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1065 393 295 24 24 chr1 63028919 63029044 -134166388 - RMER15 LTR ERVL -92 483 359 5 1065 516 312 6 19 chr1 63029691 63029848 -134165584 + ID_B1 SINE B4 63 217 -7 5 1065 242 281 47 116 chr1 63029842 63029871 -134165561 + MT2B2 LTR ERVL 136 155 -429 5 1065 458 262 11 28 chr1 63029871 63030010 -134165422 + PB1D10 SINE Alu 1 130 -17 5 1065 428 239 97 57 chr1 63031879 63032003 -134163429 + B1_Mus2 SINE Alu 1 129 -20 5 1065 465 287 123 60 chr1 63032055 63032307 -134163125 + B4 SINE B4 3 270 -22 5 1065 216 0 0 0 chr1 63032327 63032351 -134163081 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1065 529 171 29 0 chr1 63032377 63032490 -134162942 + B1_Mur2 SINE Alu 33 148 -1 5 1065 910 26 0 17 chr1 63032844 63032963 -134162469 + (GAA)n Simple_repeat Simple_repeat 1 117 0 5 1065 210 163 23 0 chr1 63033686 63033729 -134161703 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 5 1065 213 39 0 0 chr1 63033734 63033760 -134161672 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 6 1065 275 216 176 0 chr1 63033760 63033834 -134161598 - PB1D10 SINE Alu -12 105 19 6 1065 213 324 0 13 chr1 63033942 63034017 -134161415 + MIR SINE MIR 79 152 -110 6 1065 283 289 34 34 chr1 63034305 63034423 -134161009 + MLT1G LTR MaLR 247 364 -227 6 1065 189 336 54 9 chr1 63034502 63034613 -134160819 + L2a LINE L2 3274 3389 -37 6 1065 306 0 0 0 chr1 63034725 63034759 -134160673 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 6 1065 1254 47 0 0 chr1 63035272 63035420 -134160012 + B1_Mus1 SINE Alu 1 148 0 6 1065 489 118 39 16 chr1 63036441 63036570 -134158862 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 6 1065 348 300 9 26 chr1 63036713 63036826 -134158606 + PB1D10 SINE Alu 7 117 0 6 1065 808 239 61 19 chr1 63036870 63037083 -134158349 - ID_B1 SINE B4 -2 222 1 6 1065 456 19 0 0 chr1 63037107 63037160 -134158272 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1065 466 227 17 76 chr1 63037174 63037293 -134158139 - RSINE1 SINE B4 -26 139 28 7 1065 654 140 0 0 chr1 63038282 63038396 -134157036 + (TG)n Simple_repeat Simple_repeat 1 114 0 7 1065 307 282 149 72 chr1 63038400 63038595 -134156837 - B4A SINE B4 0 292 83 7 1065 786 204 14 0 chr1 63038613 63038760 -134156672 - B1_Mur4 SINE Alu 0 150 2 7 1065 869 152 7 33 chr1 63039654 63039804 -134155628 - B1_Mus1 SINE Alu -2 146 1 7 1065 34 0 0 0 chr1 63039845 63039879 -134155553 + AT_rich Low_complexity Low_complexity 1 34 0 7 1065 932 330 89 21 chr1 63040074 63040267 -134155165 - MER74A LTR ERVL -12 546 347 7 1065 339 25 0 0 chr1 63040267 63040307 -134155125 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 7 1065 932 330 89 21 chr1 63040307 63040587 -134154845 - MER74A LTR ERVL -212 346 41 7 1065 1017 289 40 20 chr1 63040806 63041159 -134154273 + L1MB7 LINE L1 5740 6099 -85 7 1065 289 272 86 10 chr1 63041168 63041268 -134154164 + PB1D7 SINE Alu 13 119 -1 8 1065 566 230 0 49 chr1 63041381 63041484 -134153948 + B1F1 SINE Alu 9 110 -39 8 1065 2465 141 13 5 chr1 63041484 63041875 -134153557 - ORR1B1 LTR MaLR 0 394 1 8 1065 566 230 0 49 chr1 63041875 63041913 -134153519 + B1F1 SINE Alu 111 143 -6 8 1065 606 234 107 33 chr1 63042348 63042618 -134152814 - MER31A LTR ERV1 -94 391 102 8 1065 466 180 64 57 chr1 63042939 63043080 -134152352 - B1F2 SINE Alu -1 148 7 8 1065 501 241 71 49 chr1 63043103 63043286 -134152146 - MLT1C LTR MaLR -257 210 24 8 1065 7908 100 40 9 chr1 63043735 63044511 -134150921 - Lx3C LINE L1 -2 6974 6170 8 1065 261 0 0 0 chr1 63044511 63044540 -134150892 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1065 7908 100 40 9 chr1 63044540 63044946 -134150486 - Lx3C LINE L1 -807 6169 5757 8 133 17978 96 12 7 chr1 63044948 63047525 -134147907 - Lx3C LINE L1 -236 5650 3061 8 1066 365 0 22 0 chr1 63047789 63047834 -134147598 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 8 1066 288 295 120 8 chr1 63048303 63048436 -134146996 + B1F SINE Alu 1 148 -1 8 1066 315 0 0 0 chr1 63049878 63049913 -134145519 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1066 699 188 53 0 chr1 63049940 63050073 -134145359 + B1_Mus1 SINE Alu 2 141 -7 9 1066 202 209 0 0 chr1 63050074 63050117 -134145315 + GA-rich Low_complexity Low_complexity 2 44 0 9 1066 288 0 0 0 chr1 63050120 63050152 -134145280 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 9 1066 340 179 302 15 chr1 63050158 63050280 -134145152 + B1_Mur2 SINE Alu 2 149 0 9 1066 506 244 46 98 chr1 63050295 63050468 -134144964 + RSINE1 SINE B4 2 165 0 9 1066 1456 65 0 16 chr1 63050884 63051073 -134144359 + B2_Mm2 SINE B2 2 187 -8 9 1066 239 231 0 0 chr1 63051394 63051446 -134143986 + L1ME1 LINE L1 6119 6170 -9 9 1066 826 242 12 66 chr1 63052046 63052292 -134143140 + B4A SINE B4 1 232 -60 9 1066 1184 81 0 22 chr1 63052292 63052470 -134142962 + B2_Mm2 SINE B2 1 174 -21 9 1066 552 165 6 0 chr1 63052471 63052579 -134142853 + ORR1B2 LTR MaLR 56 180 -198 1 1066 677 188 7 0 chr1 63052579 63052728 -134142704 + CT-rich Low_complexity Low_complexity 2 151 0 1 1066 1102 151 14 42 chr1 63052742 63052944 -134142488 + ORR1B2 LTR MaLR 160 359 -8 1 1066 3353 41 5 0 chr1 63052944 63053338 -134142094 + MTA_Mm LTR MaLR 1 396 0 1 1066 8951 51 5 1 chr1 63053338 63054432 -134141000 + MTA_Mm-int LTR MaLR 1 1098 0 1 1066 3402 38 5 0 chr1 63054432 63054826 -134140606 + MTA_Mm LTR MaLR 1 396 0 1 1066 233 217 48 48 chr1 63054835 63054898 -134140534 + B4A SINE B4 230 292 0 9 1066 267 31 0 0 chr1 63054911 63054943 -134140489 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1066 267 203 26 39 chr1 63054989 63055066 -134140366 - MER5A1 DNA MER1_type -87 79 4 1 1066 381 58 0 0 chr1 63055066 63055118 -134140314 + (GTTTG)n Simple_repeat Simple_repeat 1 52 0 1 1066 1041 193 25 0 chr1 63055212 63055409 -134140023 + B3 SINE B2 9 210 -6 1 1066 248 262 43 58 chr1 63055454 63055523 -134139909 - ID4_ SINE ID -5 78 11 1 1066 1924 178 31 39 chr1 63056658 63057393 -134138039 + RMER12 LTR ERVK 1 798 -524 1 1066 2423 90 12 0 chr1 63057393 63057716 -134137716 + ORR1A2 LTR MaLR 1 327 0 1 1066 9895 137 98 21 chr1 63057717 63058721 -134136711 + ORR1A2-int LTR MaLR 2 1064 -899 1 1066 1425 86 5 0 chr1 63058721 63058907 -134136525 - B2_Mm1a SINE B2 -5 188 2 1 1066 9895 137 98 21 chr1 63058907 63059724 -134135708 + ORR1A2-int LTR MaLR 1065 1963 0 1 1066 2414 86 3 58 chr1 63059724 63060070 -134135362 + ORR1A2 LTR MaLR 1 327 0 1 1066 1924 156 41 13 chr1 63060070 63060108 -134135324 + RMER12 LTR ERVK 799 844 -478 1 1066 709 177 335 0 chr1 63060110 63060349 -134135083 + L1Md_F2 LINE L1 314 632 -5987 1 1066 35390 64 1 5 chr1 63060347 63061229 -134134203 + L1Md_F2 LINE L1 792 1770 -4116 1 1066 1533 57 0 15 chr1 63061229 63061425 -134134007 + B2_Mm1a SINE B2 1 193 0 1 1066 35390 43 2 8 chr1 63061425 63064418 -134131014 + L1Md_F2 LINE L1 1771 4737 -1149 1 1066 183 42 0 0 chr1 63064418 63064442 -134130990 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1066 35390 43 2 8 chr1 63064442 63065292 -134130140 + L1Md_F2 LINE L1 4738 5589 -297 1 1066 8346 37 3 1 chr1 63065292 63066282 -134129150 + L1Md_F2 LINE L1 5590 6581 -4 1 1066 345 287 120 0 chr1 63066413 63066521 -134128911 + ID_B1 SINE B4 50 170 -54 1 1066 234 321 49 0 chr1 63066455 63066536 -134128896 + PB1D10 SINE Alu 23 107 -10 1 1066 388 255 20 60 chr1 63066552 63066652 -134128780 + PB1D10 SINE Alu 14 109 -8 1 1066 362 247 20 61 chr1 63066655 63066754 -134128678 + B4 SINE B4 2 96 -196 1 1066 21 0 0 0 chr1 63066976 63066997 -134128435 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 447 92 0 0 chr1 63067097 63067162 -134128270 + (CATA)n Simple_repeat Simple_repeat 3 67 0 1 1066 637 78 0 11 chr1 63067204 63067295 -134128137 + B2_Mm2 SINE B2 15 104 -91 1 1066 810 0 0 0 chr1 63067304 63067394 -134128038 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 1 1066 2062 271 77 75 chr1 63067401 63067490 -134127942 - Lx9 LINE L1 -215 7429 7343 1 1066 486 0 0 0 chr1 63067490 63067544 -134127888 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1066 2062 271 77 75 chr1 63067544 63067823 -134127609 - Lx9 LINE L1 -302 7342 7055 1 1066 4530 146 82 66 chr1 63067823 63068711 -134126721 - RMER19B LTR ERVK 0 902 1 1 1066 2062 271 77 75 chr1 63068711 63069126 -134126306 - Lx9 LINE L1 -590 7054 6654 1 1066 423 0 0 0 chr1 63069126 63069173 -134126259 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1066 2062 271 77 75 chr1 63069173 63069270 -134126162 - Lx9 LINE L1 -991 6653 6545 1 1066 576 236 97 58 chr1 63069292 63069499 -134125933 - B3 SINE B2 0 216 2 1 1066 492 222 18 9 chr1 63069515 63069624 -134125808 + B4A SINE B4 114 223 -69 1 1066 465 271 150 6 chr1 63070139 63070306 -134125126 - L2 LINE L2 -561 2858 2668 1 1066 345 274 76 17 chr1 63070388 63070467 -134124965 - B1F SINE Alu -1 148 71 1 1066 378 0 0 0 chr1 63070467 63070509 -134124923 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1066 345 274 76 17 chr1 63070509 63070548 -134124884 - B1F SINE Alu -79 70 24 1 1066 1654 42 0 0 chr1 63070576 63070768 -134124664 + B2_Mm1t SINE B2 2 193 0 1 1066 961 237 170 22 chr1 63070825 63071148 -134124284 - ORR1D1 LTR MaLR -3 371 1 1 1066 1411 177 266 19 chr1 63071149 63071518 -134123914 + RMER6B LTR ERVK 2 461 0 1 1066 414 213 0 0 chr1 63071521 63071596 -134123836 - tRNA-Lys-AAG tRNA tRNA 0 76 2 1 1066 5748 154 53 58 chr1 63071664 63072328 -134123104 + MYSERV6-int LTR ERVK 361 1041 -7918 1 1066 286 28 0 0 chr1 63072328 63072364 -134123068 + U2 snRNA snRNA 1 36 -152 1 1066 5748 154 53 58 chr1 63072364 63072809 -134122623 + MYSERV6-int LTR ERVK 1042 1499 -7460 1 1066 205 171 0 0 chr1 63073125 63073160 -134122272 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1066 421 159 114 0 chr1 63073420 63073508 -134121924 + PB1D7 SINE Alu 7 104 -16 1 1066 3430 95 125 2 chr1 63073538 63074043 -134121389 - RMER2 LTR ERV1 0 567 1 1 1066 1145 254 102 72 chr1 63074076 63074547 -134120885 + RMER2 LTR ERV1 83 567 0 1 1066 231 304 87 13 chr1 63074547 63074697 -134120735 - L2 LINE L2 -1825 1594 1434 1 1066 535 152 20 10 chr1 63074753 63074853 -134120579 - B1_Mur1 SINE Alu -9 140 40 1 1066 4090 160 88 52 chr1 63074855 63075714 -134119718 + RMER19B LTR ERVK 1 890 -12 1 1066 2209 106 13 3 chr1 63075838 63076182 -134119250 - ORR1A4 LTR MaLR 0 329 3 1 1066 1158 55 0 20 chr1 63076216 63076227 -134119205 - B1_Mm SINE Alu -1 146 138 1 1066 222 62 0 0 chr1 63076227 63076259 -134119173 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1066 1158 55 0 20 chr1 63076259 63076396 -134119036 - B1_Mm SINE Alu -10 137 1 1 1066 227 223 149 0 chr1 63076397 63076491 -134118941 - Lx9 LINE L1 -24 7620 7513 1 1066 189 121 0 0 chr1 63076493 63076526 -134118906 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1066 2659 191 44 6 chr1 63076528 63077028 -134118404 - Lx9 LINE L1 -179 7465 6947 1 1066 339 264 33 0 chr1 63077031 63077122 -134118310 - PB1D10 SINE Alu -13 104 11 1 1066 2691 222 232 4 chr1 63077344 63078037 -134117395 - RMER1A Other Other -10 1020 170 1 1066 1445 255 103 28 chr1 63078016 63079133 -134116299 - RMER1B Other Other -575 455 1 1 1066 605 235 0 8 chr1 63079937 63080061 -134115371 + ID_B1 SINE B4 91 214 -10 1 1066 306 0 0 0 chr1 63080061 63080095 -134115337 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1 1066 308 151 39 52 chr1 63080102 63080179 -134115253 + B1_Mur1 SINE Alu 74 149 0 1 1066 297 231 15 0 chr1 63080186 63080251 -134115181 + B4 SINE B4 3 68 -224 1 1066 1344 187 34 91 chr1 63080229 63080682 -134114750 + RMER17C LTR ERVK 14 420 -331 1 1066 529 227 106 0 chr1 63080703 63080839 -134114593 + B4 SINE B4 81 231 -61 1 1066 362 297 136 0 chr1 63080839 63080957 -134114475 + RSINE1 SINE B4 3 136 -29 1 1066 235 312 0 61 chr1 63081026 63081063 -134114369 + B4 SINE B4 213 245 -47 1 1066 3464 33 2 0 chr1 63081063 63081458 -134113974 + MTA_Mm LTR MaLR 1 396 0 1 1066 235 312 0 61 chr1 63081458 63081502 -134113930 + B4 SINE B4 246 289 -3 1 1066 212 128 43 0 chr1 63081666 63081713 -134113719 + (TTG)n Simple_repeat Simple_repeat 2 50 0 1 1066 1025 248 5 0 chr1 63082793 63083003 -134112429 + B3 SINE B2 1 211 -5 1 1066 235 317 12 42 chr1 63083068 63083308 -134112124 + L1M2 LINE L1 1824 2056 -4793 1 1066 518 262 16 23 chr1 63083314 63083443 -134111989 + RSINE1 SINE B4 3 130 -35 1 1066 186 103 0 0 chr1 63083462 63083491 -134111941 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1066 429 314 99 29 chr1 63083523 63083907 -134111525 + L1_Mur3 LINE L1 1420 1830 -4050 1 1066 1113 78 7 0 chr1 63084020 63084174 -134111258 + B2_Mm2 SINE B2 1 155 -40 1 1066 296 48 24 0 chr1 63084174 63084216 -134111216 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1066 633 175 134 8 chr1 63084269 63084396 -134111036 + B1_Mus2 SINE Alu 5 147 0 1 1066 240 35 0 0 chr1 63084415 63084444 -134110988 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1066 1152 80 6 11 chr1 63084444 63084620 -134110812 + (GGAGA)n Simple_repeat Simple_repeat 2 176 0 1 1066 556 141 51 21 chr1 63084663 63084802 -134110630 + ORR1A4 LTR MaLR 1 200 -194 1 1066 425 54 0 0 chr1 63085215 63085271 -134110161 + ORR1A4 LTR MaLR 274 329 0 1 1066 4139 240 80 86 chr1 63085272 63085367 -134110065 + Lx8 LINE L1 6102 6180 -1293 1 1066 1010 148 7 0 chr1 63085367 63085516 -134109916 + B1_Mur4 SINE Alu 1 150 0 1 1066 4139 240 80 86 chr1 63085516 63085640 -134109792 + Lx8 LINE L1 6181 6270 -1203 1 1066 806 204 95 20 chr1 63085640 63085840 -134109592 + B3 SINE B2 2 216 0 1 1066 4139 240 80 86 chr1 63085840 63086999 -134108433 + Lx8 LINE L1 6271 7473 0 1 1066 587 257 12 16 chr1 63086988 63087186 -134108246 + L1M2 LINE L1 5476 5669 -622 1 1066 1821 137 92 6 chr1 63087344 63087659 -134107773 + ORR1B1 LTR MaLR 53 394 0 1 1066 310 243 0 26 chr1 63087659 63087735 -134107697 + B1F SINE Alu 76 149 0 1 1066 1217 94 28 11 chr1 63087737 63087919 -134107513 + B2_Mm1t SINE B2 1 185 -8 1 1066 362 74 19 0 chr1 63088068 63088122 -134107310 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 1 1066 828 137 69 0 chr1 63088122 63088253 -134107179 - B1_Mur4 SINE Alu -4 146 7 1 1066 800 166 92 10 chr1 63088574 63088781 -134106651 - Lx9 LINE L1 -5 7639 7416 1 1066 200 163 23 0 chr1 63089321 63089364 -134106068 + GA-rich Low_complexity Low_complexity 4 47 0 1 1066 694 226 0 63 chr1 63089585 63089774 -134105658 - MTE-int LTR MaLR -136 1444 1268 1 1066 498 151 32 3 chr1 63089777 63089898 -134105534 + MT2B LTR ERVL 6 132 -401 1 1066 455 235 100 16 chr1 63089933 63090118 -134105314 + MT2B LTR ERVL 100 413 -62 1 1066 387 0 0 0 chr1 63090121 63090164 -134105268 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1066 352 314 205 83 chr1 63090238 63090623 -134104809 - MTE-int LTR MaLR -412 1168 737 1 1066 521 257 9 18 chr1 63090672 63090783 -134104649 - ID_B1 SINE B4 -11 213 104 1 1066 843 59 0 0 chr1 63090808 63090926 -134104506 + (TCTA)n Simple_repeat Simple_repeat 2 119 0 1 1066 201 147 0 0 chr1 63090935 63090969 -134104463 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 1066 1112 256 44 14 chr1 63090971 63091264 -134104168 - ORR1D2 LTR MaLR -64 306 5 1 1066 859 301 18 18 chr1 63091269 63091543 -134103889 - Lx7 LINE L1 -826 6870 6597 1 1066 2082 36 11 14 chr1 63091543 63091824 -134103608 - MTA_Mm LTR MaLR 0 396 117 1 1066 1081 252 87 10 chr1 63091824 63092113 -134103319 - Lx8 LINE L1 -917 6556 6246 1 1066 863 298 40 98 chr1 63092475 63092616 -134102816 - MTE-int LTR MaLR -1079 501 372 1 1066 1620 26 5 20 chr1 63092616 63092812 -134102620 + B2_Mm1t SINE B2 1 193 0 1 1066 863 298 40 98 chr1 63092812 63092824 -134102608 - MTE-int LTR MaLR -1209 371 363 1 1066 1159 102 36 0 chr1 63092824 63092991 -134102441 + B2_Mm2 SINE B2 4 176 -19 1 1066 863 298 40 98 chr1 63092991 63093086 -134102346 - MTE-int LTR MaLR -1218 362 291 1 1066 345 100 0 0 chr1 63093086 63093136 -134102296 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 1 1066 863 298 40 98 chr1 63093136 63093417 -134102015 - MTE-int LTR MaLR -1290 290 1 1 1066 930 134 15 0 chr1 63093897 63094031 -134101401 + B1_Mur3 SINE Alu 1 136 -13 1 1066 236 359 0 79 chr1 63094050 63094177 -134101255 + PB1D10 SINE Alu 1 117 0 1 1066 234 227 296 43 chr1 63094184 63094299 -134101133 + B1F SINE Alu 5 148 -1 1 1066 180 253 0 0 chr1 63097101 63097176 -134098256 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1066 306 0 0 0 chr1 63098065 63098099 -134097333 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1066 261 0 0 0 chr1 63098921 63098950 -134096482 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1066 348 24 0 0 chr1 63099657 63099698 -134095734 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1066 193 0 0 86 chr1 63100827 63100862 -134094570 + (CCCA)n Simple_repeat Simple_repeat 1 32 0 2 1066 22 0 0 0 chr1 63102681 63102703 -134092729 + AT_rich Low_complexity Low_complexity 1 22 0 2 1066 206 105 0 50 chr1 63104252 63104292 -134091140 + A-rich Low_complexity Low_complexity 1 38 0 2 1066 818 171 14 0 chr1 63105825 63105971 -134089461 + B1_Mur1 SINE Alu 2 149 0 2 1066 207 0 0 0 chr1 63106129 63106152 -134089280 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1066 576 243 0 0 chr1 63106154 63106261 -134089171 - PB1D9 SINE Alu -13 107 1 2 1066 465 253 104 10 chr1 63106272 63106464 -134088968 - B3 SINE B2 -5 211 2 2 1066 217 154 26 0 chr1 63106899 63106938 -134088494 - B1F2 SINE Alu -109 40 1 2 1066 21 0 0 0 chr1 63106986 63107007 -134088425 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 291 259 140 73 chr1 63107252 63107402 -134088030 + RSINE1 SINE B4 4 163 -2 2 1066 272 299 58 0 chr1 63107460 63107547 -134087885 + PB1D10 SINE Alu 26 117 0 2 1066 299 280 84 8 chr1 63107902 63108021 -134087411 + ID_B1 SINE B4 90 217 -7 2 1066 239 206 42 56 chr1 63109006 63109041 -134086391 + MT2B LTR ERVL 224 257 -344 2 1066 262 214 167 39 chr1 63109041 63109143 -134086289 + PB1D10 SINE Alu 1 115 -2 2 1066 873 242 19 14 chr1 63109259 63109473 -134085959 + B3 SINE B2 2 216 0 2 1066 601 274 17 23 chr1 63110011 63110183 -134085249 + B4A SINE B4 120 290 -2 2 1066 477 189 54 45 chr1 63110218 63110329 -134085103 + PB1D7 SINE Alu 1 112 -8 2 1066 586 184 9 9 chr1 63110433 63110543 -134084889 + B1_Mur3 SINE Alu 33 142 -7 2 1066 2292 70 86 0 chr1 63110589 63110890 -134084542 + ORR1A2 LTR MaLR 1 327 0 2 1066 235 316 25 0 chr1 63111199 63111278 -134084154 - ID4 SINE ID -1 82 2 2 1066 441 0 0 0 chr1 63111642 63111691 -134083741 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 2 1066 917 42 0 0 chr1 63111691 63111809 -134083623 - B1_Mus1 SINE Alu -30 118 1 2 1066 237 33 0 0 chr1 63111817 63111847 -134083585 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 2 1066 479 249 43 32 chr1 63112687 63112874 -134082558 - B3 SINE B2 -3 192 1 2 1066 290 155 0 79 chr1 63113060 63113123 -134082309 - PB1D10 SINE Alu 0 117 60 2 1066 1144 80 105 39 chr1 63113187 63113368 -134082064 + B2_Mm2 SINE B2 2 194 -1 2 1066 200 188 0 0 chr1 63113734 63113766 -134081666 + polypurine Low_complexity Low_complexity 4 35 0 2 1066 225 125 0 0 chr1 63113824 63113856 -134081576 + B1_Mur2 SINE Alu 95 126 -23 2 1066 1416 77 38 0 chr1 63114142 63114325 -134081107 + B2_Mm2 SINE B2 2 191 -4 2 1066 412 324 0 26 chr1 63114369 63114483 -134080949 + PB1D10 SINE Alu 2 112 -5 2 1066 212 214 89 0 chr1 63114517 63114573 -134080859 + ID4 SINE ID 10 70 -13 2 1066 246 186 28 73 chr1 63114586 63114667 -134080765 + PB1D9 SINE Alu 39 111 -9 2 1066 198 0 0 0 chr1 63114667 63114689 -134080743 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1066 627 244 25 18 chr1 63114956 63115119 -134080313 - RSINE1 SINE B4 0 165 2 2 1066 183 42 0 0 chr1 63115358 63115382 -134080050 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1066 646 250 21 0 chr1 63115383 63115527 -134079905 - B1F SINE Alu 0 149 3 2 1066 3628 120 153 15 chr1 63115802 63116466 -134078966 + RMER6A LTR ERVK 1 756 0 2 1066 344 292 154 0 chr1 63116833 63116963 -134078469 + RSINE1 SINE B4 3 152 -13 2 1066 549 219 0 159 chr1 63117045 63117208 -134078224 + B1_Mur1 SINE Alu 2 138 -11 2 1066 234 0 0 0 chr1 63117209 63117235 -134078197 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1066 21 0 0 0 chr1 63117489 63117510 -134077922 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 316 208 23 125 chr1 63117581 63117669 -134077763 - ID_B1 SINE B4 0 224 146 2 1066 1139 95 0 0 chr1 63117670 63117817 -134077615 + B1_Mus1 SINE Alu 2 148 0 2 1066 22 0 0 0 chr1 63117817 63117839 -134077593 + AT_rich Low_complexity Low_complexity 1 22 0 2 1066 192 77 0 0 chr1 63117892 63117918 -134077514 + (TCTCCC)n Simple_repeat Simple_repeat 3 28 0 2 1066 288 275 0 24 chr1 63118140 63118222 -134077210 - ID4_ SINE ID 0 83 4 2 1066 1121 44 0 0 chr1 63118632 63118767 -134076665 + B1_Mus1 SINE Alu 2 136 -12 2 1066 447 187 0 0 chr1 63118767 63118842 -134076590 - B3 SINE B2 -23 193 119 2 1066 709 237 54 54 chr1 63119122 63119416 -134076016 + RLTR15 LTR ERVK 1 294 -65 2 1066 229 300 28 14 chr1 63119578 63119649 -134075783 + PB1D10 SINE Alu 12 83 -34 2 1066 1183 74 0 0 chr1 63119754 63119902 -134075530 + B1_Mus1 SINE Alu 1 148 0 2 1066 32 81 0 0 chr1 63119940 63120014 -134075418 + AT_rich Low_complexity Low_complexity 1 74 0 2 1066 252 0 0 0 chr1 63120045 63120073 -134075359 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1066 380 290 56 0 chr1 63120094 63120201 -134075231 + B1F1 SINE Alu 1 113 -36 2 1066 366 231 0 0 chr1 63120639 63120730 -134074702 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2 1066 275 256 24 12 chr1 63122333 63122416 -134073016 + PB1D7 SINE Alu 36 119 -1 2 1066 254 279 0 0 chr1 63122498 63122559 -134072873 + B1F1 SINE Alu 76 136 -13 2 1066 496 215 30 15 chr1 63123011 63123143 -134072289 + B1F1 SINE Alu 2 135 -14 2 1066 455 200 35 79 chr1 63123241 63123355 -134072077 + PB1D9 SINE Alu 1 109 -11 2 1066 195 42 0 0 chr1 63123361 63123385 -134072047 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 2 1066 214 295 0 49 chr1 63123394 63123476 -134071956 + B4 SINE B4 15 92 -200 2 1066 443 268 184 11 chr1 63123486 63123660 -134071772 + B3 SINE B2 7 210 -6 2 1066 306 326 146 54 chr1 63123681 63123866 -134071566 + B4A SINE B4 91 292 0 2 1066 222 171 0 0 chr1 63123867 63123908 -134071524 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1066 268 188 87 0 chr1 63124512 63124581 -134070851 + MamRep605 Unknown Unknown 450 524 -352 2 1066 629 199 51 14 chr1 63125698 63125836 -134069596 + RSINE1 SINE B4 4 146 -19 2 1066 25 65 0 0 chr1 63125847 63125893 -134069539 + AT_rich Low_complexity Low_complexity 1 46 0 2 1066 711 55 261 9 chr1 63125894 63126005 -134069427 + B1_Mus1 SINE Alu 2 140 -8 2 1066 260 27 27 0 chr1 63126005 63126042 -134069390 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1066 610 295 32 0 chr1 63126332 63126522 -134068910 + ID_B1 SINE B4 29 224 0 2 1066 338 202 19 113 chr1 63126562 63126668 -134068764 + PB1D9 SINE Alu 14 109 -11 2 1066 540 0 0 0 chr1 63127209 63127269 -134068163 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1066 198 0 0 0 chr1 63127269 63127290 -134068142 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1066 1346 94 0 6 chr1 63127465 63127646 -134067786 + B2_Mm2 SINE B2 2 181 -14 2 1066 183 100 0 0 chr1 63128090 63128120 -134067312 + (TTTAG)n Simple_repeat Simple_repeat 3 32 0 2 1066 830 238 21 26 chr1 63128120 63128310 -134067122 - ID_B1 SINE B4 -11 213 25 2 1066 189 0 0 0 chr1 63128361 63128382 -134067050 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1066 1090 224 23 32 chr1 63128453 63128799 -134066633 + RLTR15 LTR ERVK 1 343 -16 2 1066 217 374 111 17 chr1 63128851 63128968 -134066464 + RSINE1 SINE B4 11 138 -27 2 1066 30 27 0 0 chr1 63129017 63129054 -134066378 + AT_rich Low_complexity Low_complexity 1 37 0 2 1066 555 219 25 8 chr1 63129903 63130023 -134065409 - B3 SINE B2 -5 211 90 2 1066 597 250 114 45 chr1 63130029 63130205 -134065227 - B3A SINE B2 -10 188 1 2 1066 486 161 140 0 chr1 63130210 63130303 -134065129 - PB1D7 SINE Alu -2 118 13 2 1066 584 231 140 28 chr1 63130576 63130754 -134064678 + B3A SINE B2 1 198 0 2 1066 399 73 0 0 chr1 63130755 63130810 -134064622 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1066 771 150 28 21 chr1 63130822 63130965 -134064467 + B1_Mur4 SINE Alu 6 149 -1 2 1066 191 32 0 61 chr1 63130972 63131005 -134064427 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1066 207 0 0 0 chr1 63131145 63131168 -134064264 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1066 207 0 0 0 chr1 63131168 63131190 -134064242 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1066 24 67 0 0 chr1 63131196 63131241 -134064191 + AT_rich Low_complexity Low_complexity 1 45 0 2 1066 240 35 0 0 chr1 63131269 63131298 -134064134 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1066 1200 54 0 0 chr1 63131298 63131445 -134063987 - B1_Mm SINE Alu 0 147 1 2 1066 470 248 51 0 chr1 63131463 63131600 -134063832 - B1F2 SINE Alu -5 144 1 2 1066 212 280 67 0 chr1 63131702 63131777 -134063655 + PB1 SINE Alu 43 122 -5 2 1066 392 292 0 34 chr1 63133083 63133200 -134062232 + PB1D10 SINE Alu 2 114 -3 2 1066 673 229 19 65 chr1 63133205 63133359 -134062073 + B1_Mus1 SINE Alu 1 147 -1 2 1066 412 223 133 19 chr1 63133403 63133508 -134061924 + PB1D10 SINE Alu 1 117 0 2 1066 345 47 0 0 chr1 63133818 63133861 -134061571 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1066 315 224 49 39 chr1 63134353 63134455 -134060977 + MER103 DNA DNA 54 156 -10 2 1066 494 176 19 0 chr1 63134642 63134750 -134060682 + GA-rich Low_complexity Low_complexity 2 111 0 2 1066 242 220 0 0 chr1 63134781 63134831 -134060601 + PB1D10 SINE Alu 21 70 -47 2 1066 259 321 25 59 chr1 63134883 63135002 -134060430 + PB1D10 SINE Alu 1 115 -2 3 1066 276 55 36 18 chr1 63135063 63135119 -134060313 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 3 1066 211 242 69 108 chr1 63135199 63135301 -134060131 + B3 SINE B2 1 98 -118 3 1066 812 100 13 31 chr1 63135307 63135457 -134059975 + B2_Mm2 SINE B2 2 159 -57 3 1066 297 68 0 0 chr1 63135472 63135516 -134059916 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 3 1066 288 0 0 0 chr1 63135682 63135714 -134059718 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1066 239 282 42 0 chr1 63135725 63135796 -134059636 - PB1D10 SINE Alu -38 79 6 3 1066 491 151 169 1 chr1 63136436 63136582 -134058850 + RLTR11A LTR ERVK 5 191 -337 3 1066 812 171 45 22 chr1 63137276 63137455 -134057977 + B2_Mm2 SINE B2 7 189 -6 3 1066 1277 102 23 0 chr1 63137512 63137689 -134057743 + B2_Mm2 SINE B2 2 182 -13 3 1066 429 99 299 51 chr1 63137738 63137855 -134057577 + B2_Mm2 SINE B2 47 192 -3 3 1066 1101 122 0 0 chr1 63137920 63138068 -134057364 + B1_Mus1 SINE Alu 1 148 0 3 1066 216 0 0 0 chr1 63138068 63138092 -134057340 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 3 1066 22 0 0 0 chr1 63138101 63138123 -134057309 + AT_rich Low_complexity Low_complexity 1 22 0 3 1066 213 121 0 0 chr1 63139221 63139254 -134056178 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1066 1217 41 7 0 chr1 63139479 63139625 -134055807 + B1_Mus1 SINE Alu 1 147 -1 3 1066 251 271 129 0 chr1 63140554 63140624 -134054808 + ID_B1 SINE B4 89 167 -57 3 1066 649 242 176 0 chr1 63140653 63140835 -134054597 + B3 SINE B2 1 214 -2 3 1066 477 306 13 33 chr1 63140935 63141087 -134054345 + B1F1 SINE Alu 1 149 0 3 1066 201 273 0 0 chr1 63141133 63141188 -134054244 + A-rich Low_complexity Low_complexity 1 55 0 3 1066 429 283 32 32 chr1 63141196 63141353 -134054079 + RSINE1 SINE B4 9 165 0 3 1066 377 270 141 63 chr1 63141492 63141761 -134053671 + B4A SINE B4 3 292 0 3 1066 499 241 68 0 chr1 63141869 63142002 -134053430 + RSINE1 SINE B4 3 144 -21 3 1066 270 0 0 0 chr1 63142012 63142042 -134053390 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1066 664 211 8 30 chr1 63142426 63142558 -134052874 + B1_Mur3 SINE Alu 2 130 -19 3 1066 561 258 18 61 chr1 63142603 63142768 -134052664 + ID_B1 SINE B4 1 158 -66 3 1066 287 273 173 14 chr1 63142979 63143160 -134052272 + MIR SINE MIR 43 241 -21 3 1066 253 155 35 0 chr1 63143627 63143685 -134051747 + GA-rich Low_complexity Low_complexity 5 64 0 3 1066 718 264 28 14 chr1 63143827 63144042 -134051390 + ID_B1 SINE B4 7 224 0 3 1066 443 288 116 7 chr1 63144204 63144351 -134051081 + RSINE1 SINE B4 2 164 -1 3 1066 24 0 0 0 chr1 63144359 63144383 -134051049 + AT_rich Low_complexity Low_complexity 1 24 0 3 1066 507 285 43 37 chr1 63144430 63144594 -134050838 + B4A SINE B4 11 175 -117 3 1066 244 294 71 27 chr1 63144832 63144944 -134050488 + PB1D10 SINE Alu 1 117 0 3 1066 905 208 58 19 chr1 63144961 63145167 -134050265 - B3 SINE B2 0 216 3 3 1066 4124 171 72 67 chr1 63145273 63146170 -134049262 - RMER19B LTR ERVK 0 902 1 3 1066 407 234 63 36 chr1 63146191 63146302 -134049130 - B1F SINE Alu -35 114 1 3 1066 638 218 21 21 chr1 63146367 63146512 -134048920 + B1_Mm SINE Alu 1 145 -2 3 1066 362 234 13 0 chr1 63147252 63147329 -134048103 + B1_Mur1 SINE Alu 59 136 -13 3 1066 243 0 0 0 chr1 63147329 63147356 -134048076 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1066 732 243 7 0 chr1 63147384 63147528 -134047904 + B1_Mur1 SINE Alu 2 146 -3 3 1066 369 146 10 50 chr1 63147551 63147564 -134047868 + L1Md_F3 LINE L1 6474 6487 -97 3 1066 1404 85 21 0 chr1 63147564 63147753 -134047679 + B2_Mm2 SINE B2 1 193 -2 3 1066 369 146 10 50 chr1 63147753 63147840 -134047592 + L1Md_F3 LINE L1 6488 6570 -14 3 1066 228 229 68 54 chr1 63147845 63147919 -134047513 + RSINE1 SINE B4 7 81 -84 3 1066 1437 72 0 6 chr1 63148080 63148262 -134047170 + B2_Mm2 SINE B2 1 181 -14 3 1066 270 0 0 0 chr1 63148265 63148295 -134047137 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1066 509 251 10 0 chr1 63148300 63148426 -134047006 - ID_B1 SINE B4 -29 195 73 3 1066 365 204 0 7 chr1 63148426 63148564 -134046868 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 1066 528 256 15 30 chr1 63148600 63148733 -134046699 - RSINE1 SINE B4 -34 131 1 3 1066 1129 103 0 0 chr1 63148786 63148931 -134046501 + B1_Mus1 SINE Alu 3 147 -1 3 1066 488 292 95 0 chr1 63149226 63149373 -134046059 - B3A SINE B2 -37 161 1 3 1066 540 263 38 0 chr1 63149405 63149538 -134045894 + B1F2 SINE Alu 3 140 -9 3 1066 295 252 30 112 chr1 63149849 63149983 -134045449 - B4A SINE B4 -118 174 52 3 1066 950 74 54 7 chr1 63150081 63150230 -134045202 - B2_Mm2 SINE B2 -39 156 1 3 1066 367 265 2 40 chr1 63150230 63150330 -134045102 - RSINE1 SINE B4 -196 96 2 3 1066 215 313 15 15 chr1 63150412 63150480 -134044952 - ID4_ SINE ID -13 70 3 3 1066 1050 30 37 29 chr1 63150756 63150795 -134044637 + B1_Mus2 SINE Alu 1 39 -108 3 1066 234 0 0 0 chr1 63150795 63150821 -134044611 + (G)n Simple_repeat Simple_repeat 1 26 0 3 1066 1050 30 37 29 chr1 63150821 63150917 -134044515 + B1_Mus2 SINE Alu 40 137 -10 3 1066 186 43 0 0 chr1 63150917 63150940 -134044492 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1066 509 208 114 8 chr1 63150973 63151104 -134044328 + B1F1 SINE Alu 4 148 -1 3 1066 3218 36 7 37 chr1 63151403 63151811 -134043621 - MTA_Mm LTR MaLR 0 396 1 3 1066 390 294 51 14 chr1 63152320 63152458 -134042974 + MIRb SINE MIR 120 262 0 3 1066 675 168 0 139 chr1 63152728 63152901 -134042531 + B1_Mur2 SINE Alu 1 149 0 3 1066 23 0 0 0 chr1 63153445 63153468 -134041964 + AT_rich Low_complexity Low_complexity 1 23 0 3 1066 476 226 16 50 chr1 63153478 63153599 -134041833 + PB1D7 SINE Alu 4 120 0 3 1066 246 32 0 0 chr1 63153602 63153633 -134041799 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1066 1296 14 0 0 chr1 63153747 63153894 -134041538 + B1_Mm SINE Alu 1 147 0 3 1066 234 0 0 0 chr1 63153901 63153927 -134041505 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1066 261 0 0 0 chr1 63155033 63155062 -134040370 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 1066 491 199 96 0 chr1 63155390 63155526 -134039906 - B1F SINE Alu 0 149 1 3 1066 610 241 82 0 chr1 63155756 63155914 -134039518 - B3A SINE B2 -25 173 3 3 1066 214 29 57 0 chr1 63155920 63155955 -134039477 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 1066 536 214 75 22 chr1 63155977 63156111 -134039321 - B1F2 SINE Alu -2 147 7 3 1066 792 240 0 7 chr1 63156163 63156318 -134039114 + RSINE1 SINE B4 2 155 -10 3 1066 352 283 22 0 chr1 63156749 63156841 -134038591 - PB1D10 SINE Alu -23 94 1 3 1066 292 240 204 0 chr1 63156866 63156972 -134038460 + B1F2 SINE Alu 16 142 -7 3 1066 611 233 73 8 chr1 63157518 63157704 -134037728 + B3 SINE B2 1 195 -3 3 1066 234 0 0 0 chr1 63157704 63157730 -134037702 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1066 180 176 0 0 chr1 63157861 63157895 -134037537 + T-rich Low_complexity Low_complexity 2 35 0 3 1066 873 164 0 33 chr1 63157896 63158047 -134037385 - B1_Mus1 SINE Alu -2 146 1 3 1066 725 21 0 0 chr1 63158293 63158387 -134037045 - B1_Mus1 SINE Alu -54 94 1 3 1066 324 0 0 0 chr1 63158950 63158986 -134036446 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1066 207 0 0 0 chr1 63159261 63159284 -134036148 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1066 26 50 0 0 chr1 63160304 63160344 -134035088 + GC_rich Low_complexity Low_complexity 1 40 0 3 1066 40 79 0 0 chr1 63160527 63160616 -134034816 + GC_rich Low_complexity Low_complexity 1 89 0 3 1066 25 105 0 0 chr1 63160650 63160745 -134034687 + GC_rich Low_complexity Low_complexity 1 95 0 3 1066 231 61 0 0 chr1 63160945 63160978 -134034454 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1066 195 100 0 0 chr1 63161596 63161626 -134033806 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1066 777 172 254 0 chr1 63162309 63162478 -134032954 - B3 SINE B2 -4 212 1 3 1066 180 111 0 0 chr1 63162490 63162517 -134032915 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 3 1066 1264 103 21 11 chr1 63162745 63162932 -134032500 - B2_Mm2 SINE B2 -6 189 1 3 1066 496 53 80 0 chr1 63163114 63163189 -134032243 - L1Md_F3 LINE L1 -3 6581 6501 3 1066 207 0 0 0 chr1 63163212 63163235 -134032197 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1066 344 235 24 24 chr1 63163235 63163311 -134032121 - B1F SINE Alu -10 139 62 3 1066 683 176 0 49 chr1 63163570 63163713 -134031719 - B1_Mus1 SINE Alu -12 136 1 3 1066 775 190 14 34 chr1 63163752 63163899 -134031533 - B1_Mur1 SINE Alu -1 148 5 3 1066 345 298 8 42 chr1 63163931 63164050 -134031382 - B1F SINE Alu -2 147 33 3 1066 1096 77 14 0 chr1 63164125 63164268 -134031164 + B1_Mus2 SINE Alu 3 147 0 3 1066 288 0 0 0 chr1 63164268 63164300 -134031132 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1066 25 31 0 0 chr1 63164438 63164470 -134030962 + AT_rich Low_complexity Low_complexity 1 32 0 3 1066 213 321 12 23 chr1 63164906 63164992 -134030440 + ID_B1 SINE B4 69 153 -71 3 1066 253 209 58 29 chr1 63164928 63164997 -134030435 + B1F SINE Alu 8 78 -71 3 1066 322 217 11 108 chr1 63165461 63165554 -134029878 + MT2B LTR ERVL 157 240 -361 4 1066 450 230 0 11 chr1 63165473 63165561 -134029871 + B1_Mur2 SINE Alu 6 92 -57 4 1066 290 67 22 0 chr1 63165577 63165622 -134029810 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 4 1066 422 252 126 0 chr1 63166172 63166307 -134029125 - MamRep1161 DNA TcMar -793 164 13 4 1066 489 243 81 87 chr1 63166583 63166732 -134028700 - B1F SINE Alu -1 148 1 4 1066 326 243 8 67 chr1 63166775 63166894 -134028538 + RSINE1 SINE B4 33 144 -21 4 1066 228 237 16 48 chr1 63167023 63167085 -134028347 + ID4 SINE ID 23 82 -1 4 1066 243 0 0 0 chr1 63167199 63167226 -134028206 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1066 328 281 86 78 chr1 63167594 63167837 -134027595 + ORR1E LTR MaLR 103 347 -12 4 1066 1325 71 55 0 chr1 63167881 63168064 -134027368 - B2_Mm2 SINE B2 0 195 3 4 1066 555 241 48 0 chr1 63168208 63168353 -134027079 - ID_B1 SINE B4 -4 220 69 4 1066 266 341 63 49 chr1 63168902 63169044 -134026388 - B1F1 SINE Alu -1 148 5 4 1066 812 212 114 0 chr1 63169051 63169244 -134026188 + B3 SINE B2 2 216 0 4 1066 406 269 27 15 chr1 63169357 63169477 -134025955 + PB1 SINE Alu 4 125 -2 4 1066 490 245 173 0 chr1 63169478 63169617 -134025815 + ID_B1 SINE B4 2 164 -60 4 1066 225 0 0 0 chr1 63169617 63169642 -134025790 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1066 481 249 112 19 chr1 63169941 63170101 -134025331 - B3 SINE B2 -3 213 39 4 1066 280 305 9 71 chr1 63170203 63170316 -134025116 + PB1 SINE Alu 5 110 -17 4 1066 188 163 23 0 chr1 63170316 63170359 -134025073 + GA-rich Low_complexity Low_complexity 2 45 0 4 1066 581 302 152 56 chr1 63170376 63171090 -134024342 - MER21B LTR ERV1 -62 801 19 4 1066 318 211 295 0 chr1 63171245 63171340 -134024092 + B3 SINE B2 1 123 -93 4 1066 1224 41 7 0 chr1 63171508 63171654 -134023778 - B1_Mus2 SINE Alu 0 147 1 4 1066 441 0 0 0 chr1 63171666 63171715 -134023717 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1066 354 264 164 0 chr1 63171720 63171830 -134023602 - RSINE1 SINE B4 -33 132 5 4 1066 505 167 70 0 chr1 63171913 63172027 -134023405 - B1F2 SINE Alu 0 149 28 4 1066 609 144 19 56 chr1 63172016 63172157 -134023275 + B1_Mur1 SINE Alu 8 137 -13 4 1066 673 206 94 0 chr1 63172172 63172332 -134023100 - B3A SINE B2 -23 175 1 4 1066 379 258 230 22 chr1 63172362 63172497 -134022935 + RSINE1 SINE B4 3 165 0 4 1066 419 183 62 112 chr1 63172579 63172739 -134022693 - L1MC4a LINE L1 -303 7579 7428 4 1066 321 267 29 10 chr1 63172772 63172874 -134022558 - MLT1E1A LTR MaLR 0 680 577 4 1066 304 278 138 31 chr1 63173077 63173207 -134022225 + B1F1 SINE Alu 1 144 -5 4 1066 437 213 21 0 chr1 63173254 63173348 -134022084 - B3A SINE B2 -94 104 9 4 1066 242 178 0 40 chr1 63173373 63173449 -134021983 + A-rich Low_complexity Low_complexity 1 73 0 4 1066 295 205 119 2 chr1 63173457 63173550 -134021882 + L1MC4a LINE L1 7281 7391 -651 4 1066 392 279 0 9 chr1 63173588 63173693 -134021739 + B3A SINE B2 83 186 -12 4 1066 207 0 0 0 chr1 63173850 63173873 -134021559 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1066 1017 69 23 0 chr1 63173873 63174003 -134021429 - B1_Mus1 SINE Alu -11 137 5 4 1066 1221 77 0 6 chr1 63174008 63174178 -134021254 - B2_Mm2 SINE B2 -25 170 2 4 1066 229 204 19 0 chr1 63174238 63174292 -134021140 - L1MC4a LINE L1 -600 7282 7228 4 1066 212 352 45 11 chr1 63174354 63174443 -134020989 - PB1D10 SINE Alu -20 97 6 4 1066 315 291 9 43 chr1 63174449 63174564 -134020868 - MLT1D LTR MaLR -28 477 367 4 1066 261 0 0 0 chr1 63174819 63174848 -134020584 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1066 1191 48 0 13 chr1 63174848 63174997 -134020435 - B1_Mm SINE Alu 0 147 1 4 1066 525 279 86 5 chr1 63175013 63175211 -134020221 - MLT1D LTR MaLR -291 214 1 4 1066 256 253 167 10 chr1 63175406 63175502 -134019930 - PB1D10 SINE Alu -2 115 5 4 1066 520 266 24 0 chr1 63175438 63175562 -134019870 - ID_B1 SINE B4 -73 151 25 4 1066 285 244 20 100 chr1 63175586 63175686 -134019746 - PB1 SINE Alu 0 127 36 4 1066 291 376 0 0 chr1 63176030 63176155 -134019277 + PB1 SINE Alu 1 125 -2 4 133 1927 99 28 28 chr1 63176391 63176713 -134018719 - RLTRETN_Mm LTR ERVK 0 322 1 4 1067 532 240 144 27 chr1 63177110 63177298 -134018134 + B3 SINE B2 1 210 -6 4 1067 1051 189 29 19 chr1 63177363 63177568 -134017864 - B3 SINE B2 -9 207 1 4 1067 1234 48 0 0 chr1 63177951 63178098 -134017334 - B1_Mm SINE Alu 0 147 1 4 1067 1156 170 20 20 chr1 63178124 63178328 -134017104 - B3 SINE B2 -6 210 7 4 1067 232 370 21 36 chr1 63178324 63178464 -134016968 - B4A SINE B4 -150 142 5 4 1067 312 313 115 84 chr1 63178510 63178796 -134016636 + MTEa LTR MaLR 71 365 -14 4 1067 655 217 126 11 chr1 63179103 63179285 -134016147 - ID_B1 SINE B4 -6 218 16 4 1067 744 149 43 50 chr1 63179411 63179552 -134015880 - B1_Mur3 SINE Alu -1 148 9 4 1067 379 300 146 27 chr1 63179664 63179924 -134015508 - B4A SINE B4 0 292 2 4 1067 308 333 16 33 chr1 63179964 63180085 -134015347 + PB1D7 SINE Alu 1 119 -1 4 1067 230 153 13 53 chr1 63180088 63180164 -134015268 + GA-rich Low_complexity Low_complexity 3 75 0 4 1067 288 0 0 0 chr1 63180164 63180196 -134015236 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 1067 682 245 0 7 chr1 63180199 63180343 -134015089 + ID_B1 SINE B4 82 224 0 4 1067 232 241 20 130 chr1 63180353 63180453 -134014979 + MT2B LTR ERVL 152 240 -361 4 1067 374 132 26 91 chr1 63180388 63180492 -134014940 + B1_Mm SINE Alu 19 119 -1 4 1067 1080 83 0 14 chr1 63180646 63180793 -134014639 + B1_Mus2 SINE Alu 3 147 0 4 1067 236 250 0 81 chr1 63180793 63180857 -134014575 + MT2B LTR ERVL 206 264 -337 4 1067 749 51 0 0 chr1 63180857 63180891 -134014541 + B1_Mm SINE Alu 49 146 -1 4 1067 58 47 0 0 chr1 63180949 63181035 -134014397 + AT_rich Low_complexity Low_complexity 1 86 0 4 1067 426 233 80 29 chr1 63181240 63181377 -134014055 - B4A SINE B4 -147 145 2 4 1067 1043 128 0 7 chr1 63181553 63181703 -134013729 - B1_Mur4 SINE Alu 0 150 2 4 1067 990 144 200 0 chr1 63181728 63181908 -134013524 - B3 SINE B2 0 216 1 4 1067 264 250 17 0 chr1 63182229 63182289 -134013143 - ID4_ SINE ID -1 82 22 4 1067 214 29 57 0 chr1 63182662 63182697 -134012735 + (TTCTC)n Simple_repeat Simple_repeat 3 39 0 4 1067 351 282 41 33 chr1 63183486 63183626 -134011806 - B1F SINE Alu -7 142 2 4 1067 1175 48 7 0 chr1 63183690 63183835 -134011597 + B1_Mm SINE Alu 2 147 0 4 1067 823 238 33 16 chr1 63183972 63184156 -134011276 + B3 SINE B2 20 206 -10 4 1067 315 0 0 0 chr1 63184347 63184382 -134011050 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4 1067 267 200 0 0 chr1 63184394 63184444 -134010988 - B1F1 SINE Alu -98 51 2 4 1067 645 191 79 22 chr1 63184946 63185085 -134010347 + B1_Mus2 SINE Alu 1 147 0 4 1067 405 205 24 0 chr1 63185089 63185172 -134010260 - RSINE1 SINE B4 -2 163 79 4 1067 270 0 0 0 chr1 63185180 63185210 -134010222 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1067 2223 81 205 84 chr1 63185260 63185569 -134009863 + RLTR47_MM LTR ERV1 2 331 -201 4 1067 1177 55 0 7 chr1 63185569 63185715 -134009717 + B1_Mus1 SINE Alu 3 147 -1 4 1067 2223 81 205 84 chr1 63185715 63185879 -134009553 + RLTR47_MM LTR ERV1 332 532 0 4 1067 376 306 36 0 chr1 63186001 63186112 -134009320 + PB1D7 SINE Alu 1 115 -5 4 1067 1056 43 64 14 chr1 63186181 63186321 -134009111 + B1_Mm SINE Alu 1 147 0 4 1067 221 164 54 18 chr1 63186333 63186389 -134009043 + B4A SINE B4 3 60 -232 4 1067 372 273 102 51 chr1 63186801 63187017 -134008415 - RLTR17 LTR ERVK -266 426 200 4 1067 813 74 215 0 chr1 63187023 63187144 -134008288 + B1_Mm SINE Alu 1 147 0 4 1067 225 0 0 0 chr1 63187144 63187169 -134008263 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1067 1145 54 0 39 chr1 63187486 63187639 -134007793 - B1_Mus2 SINE Alu 0 147 1 4 1067 480 301 21 7 chr1 63187818 63187962 -134007470 + ID_B1 SINE B4 79 224 0 4 1067 229 200 57 0 chr1 63189315 63189385 -134006047 + ID2 SINE ID 4 77 -6 4 1067 1269 84 90 0 chr1 63189458 63189636 -134005796 - B2_Mm2 SINE B2 0 195 2 4 1067 1049 134 0 0 chr1 63189686 63189835 -134005597 - B1_Mur3 SINE Alu 0 149 1 4 1067 488 226 37 28 chr1 63189887 63189996 -134005436 - RSINE1 SINE B4 -53 112 3 4 1067 293 273 0 0 chr1 63190059 63190125 -134005307 - ID4_ SINE ID -16 67 2 4 1067 324 311 56 9 chr1 63190538 63190645 -134004787 - B1F1 SINE Alu -1 148 37 4 1067 326 179 143 0 chr1 63190801 63190885 -134004547 - ID_B1 SINE B4 -8 216 121 4 1067 305 315 27 27 chr1 63191044 63191155 -134004277 + PB1D7 SINE Alu 6 116 -4 4 1067 312 296 9 36 chr1 63191344 63191442 -134003990 + PB1D10 SINE Alu 9 105 -12 4 1067 883 97 0 272 chr1 63191442 63191710 -134003722 + B2_Mm2 SINE B2 1 195 0 4 1067 312 296 9 36 chr1 63191710 63191723 -134003709 + PB1D10 SINE Alu 106 117 0 4 1067 514 219 244 0 chr1 63191740 63191859 -134003573 + B1_Mus1 SINE Alu 1 148 0 4 1067 249 296 86 0 chr1 63191893 63191974 -134003458 - ID_B1 SINE B4 -48 176 89 4 1067 240 227 85 64 chr1 63192131 63192225 -134003207 - RSINE1 SINE B4 -1 164 69 4 1067 704 267 10 35 chr1 63192352 63192550 -134002882 + B3 SINE B2 24 216 0 5 1067 717 261 39 20 chr1 63192570 63192773 -134002659 + ID_B1 SINE B4 10 216 -8 5 1067 229 262 11 45 chr1 63192786 63192874 -134002558 + RSINE1 SINE B4 2 86 -79 5 1067 1173 81 16 26 chr1 63192796 63192986 -134002446 + B2_Mm2 SINE B2 8 195 0 5 1067 315 275 0 14 chr1 63193447 63193517 -134001915 + RSINE1 SINE B4 2 70 -95 5 1067 291 303 112 15 chr1 63194057 63194191 -134001241 + RSINE1 SINE B4 2 148 -17 5 1067 622 243 66 0 chr1 63194228 63194364 -134001068 + B1_Mus1 SINE Alu 4 148 0 5 1067 180 217 0 0 chr1 63194495 63194541 -134000891 + CT-rich Low_complexity Low_complexity 3 48 0 5 1067 297 185 15 30 chr1 63194761 63194828 -134000604 + ID4_ SINE ID 13 78 -5 5 1067 331 180 0 47 chr1 63194845 63194909 -134000523 - ID SINE ID -159 65 5 5 1067 406 57 0 0 chr1 63195191 63195244 -134000188 + B2_Mm2 SINE B2 2 54 -141 5 1067 657 149 0 9 chr1 63195342 63195450 -133999982 + B1_Mus2 SINE Alu 20 126 -21 5 1067 249 33 0 0 chr1 63195456 63195486 -133999946 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1067 207 69 0 0 chr1 63195525 63195554 -133999878 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 5 1067 1443 75 37 0 chr1 63195693 63195880 -133999552 - B2_Mm2 SINE B2 0 195 2 5 1067 1332 97 16 5 chr1 63196054 63196240 -133999192 + B2_Mm2 SINE B2 1 188 -7 5 1067 826 45 0 0 chr1 63196384 63196495 -133998937 - B1_Mus2 SINE Alu 0 147 37 5 1067 296 131 74 116 chr1 63196427 63196522 -133998910 - RLTR25B LTR ERVK -519 509 419 5 1067 246 32 0 0 chr1 63196786 63196817 -133998615 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1067 883 141 42 0 chr1 63196867 63197009 -133998423 - B1_Mur3 SINE Alu -1 148 1 5 1067 275 284 13 39 chr1 63197009 63197087 -133998345 - ID4_ SINE ID -64 88 13 5 1067 218 247 24 61 chr1 63197014 63197096 -133998336 - B4 SINE B4 -206 86 8 5 1067 289 246 206 69 chr1 63197249 63197380 -133998052 + B1F1 SINE Alu 1 149 0 5 1067 744 52 0 0 chr1 63197402 63197499 -133997933 + B2_Mm2 SINE B2 3 99 -96 5 1067 366 109 62 0 chr1 63197496 63197560 -133997872 + B1_Mus2 SINE Alu 80 147 0 5 1067 198 0 0 0 chr1 63197572 63197594 -133997838 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1067 752 102 0 15 chr1 63197978 63198108 -133997324 + B2_Mm1a SINE B2 66 193 0 5 1067 375 78 0 0 chr1 63198297 63198348 -133997084 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1067 300 259 0 12 chr1 63198538 63198620 -133996812 + B1_Mur1 SINE Alu 69 149 0 5 1067 543 264 19 44 chr1 63198896 63199079 -133996353 + B3 SINE B2 40 216 0 5 1067 29 0 0 0 chr1 63199079 63199108 -133996324 + AT_rich Low_complexity Low_complexity 1 29 0 5 1067 930 153 202 6 chr1 63199108 63199286 -133996146 + B3 SINE B2 1 213 -3 5 1067 883 160 14 0 chr1 63199878 63200022 -133995410 - B1_Mur4 SINE Alu -4 146 1 5 1067 238 204 55 18 chr1 63200196 63200251 -133995181 + L1MC4 LINE L1 7508 7564 -478 5 1067 1227 180 9 5 chr1 63200275 63200487 -133994945 + Lx5 LINE L1 6150 6362 -688 5 1067 940 123 109 23 chr1 63200488 63200662 -133994770 + B2_Mm2 SINE B2 1 189 -6 5 1067 208 0 62 0 chr1 63200699 63200731 -133994701 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 5 1067 3857 130 22 98 chr1 63200748 63201482 -133993950 + Lx4A LINE L1 6372 7049 -9 5 1067 309 297 13 26 chr1 63201581 63201657 -133993775 + ID SINE ID 1 75 -149 5 1067 470 304 18 30 chr1 63201682 63201848 -133993584 + RSINE1 SINE B4 2 165 0 5 1067 1339 90 11 0 chr1 63201896 63202073 -133993359 + B2_Mm1t SINE B2 3 181 -12 5 1067 314 164 0 0 chr1 63202102 63202157 -133993275 + B2_Mm1t SINE B2 48 102 -91 5 1067 257 38 0 54 chr1 63202156 63202212 -133993220 + B2_Mm2 SINE B2 137 189 -6 5 1067 297 323 109 31 chr1 63202263 63202391 -133993041 + ID_B1 SINE B4 76 213 -11 5 1067 859 163 13 13 chr1 63202401 63202541 -133992891 + B1_Mur1 SINE Alu 1 141 -8 5 1067 279 0 0 0 chr1 63202541 63202572 -133992860 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1067 340 244 0 109 chr1 63203540 63203641 -133991791 + B1_Mus1 SINE Alu 1 90 -58 5 1067 329 229 229 0 chr1 63203551 63203660 -133991772 + ID_B1 SINE B4 90 223 -1 5 1067 1103 262 114 72 chr1 63203973 63204630 -133990802 + Lx9 LINE L1 6960 7644 0 5 1067 1368 90 31 11 chr1 63204955 63205146 -133990286 + B2_Mm2 SINE B2 1 195 0 5 1067 324 202 50 12 chr1 63205476 63205556 -133989876 - ID SINE ID -141 83 1 5 1067 726 122 176 55 chr1 63205822 63205987 -133989445 + B2_Mm2 SINE B2 2 186 -9 5 1067 816 196 7 7 chr1 63206035 63206179 -133989253 + B1_Mur1 SINE Alu 5 148 -1 5 1067 429 20 0 0 chr1 63206179 63206229 -133989203 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 5 1067 722 194 16 0 chr1 63206602 63206731 -133988701 + B1_Mus2 SINE Alu 16 146 -1 5 1067 266 306 0 0 chr1 63206750 63206822 -133988610 - ID4 SINE ID -10 73 2 5 1067 252 283 89 20 chr1 63206835 63206936 -133988496 - PB1D10 SINE Alu -8 109 2 5 1067 1379 97 5 0 chr1 63207036 63207221 -133988211 + B2_Mm1a SINE B2 1 186 -7 5 1067 575 155 29 10 chr1 63207243 63207347 -133988085 + B3 SINE B2 2 107 -109 5 1067 341 225 71 18 chr1 63207672 63207785 -133987647 - ID_B1 SINE B4 0 224 106 5 1067 287 248 116 0 chr1 63207674 63207803 -133987629 - B1F SINE Alu 0 149 6 5 1067 717 62 0 0 chr1 63208054 63208151 -133987281 + BC1_Mm scRNA scRNA 1 97 -55 5 1067 774 269 18 0 chr1 63208184 63208355 -133987077 + B3 SINE B2 3 176 -40 5 1067 306 229 0 0 chr1 63208397 63208475 -133986957 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 1067 351 0 0 0 chr1 63208475 63208514 -133986918 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1067 448 258 57 114 chr1 63208545 63208843 -133986589 + B4A SINE B4 1 281 -11 5 1067 547 192 9 35 chr1 63208867 63208995 -133986437 + B1_Mur3 SINE Alu 2 120 0 5 1067 801 263 97 8 chr1 63209161 63209418 -133986014 + B4A SINE B4 1 280 -12 5 1067 219 69 0 0 chr1 63209429 63209458 -133985974 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1067 22 0 0 0 chr1 63209515 63209537 -133985895 + AT_rich Low_complexity Low_complexity 1 22 0 5 1067 279 344 107 66 chr1 63209561 63209832 -133985600 + B4 SINE B4 2 283 -9 5 1067 338 313 98 2 chr1 63209918 63210157 -133985275 + B4 SINE B4 13 292 0 5 1067 1159 209 122 39 chr1 63210861 63211269 -133984163 + RMER10A LTR ERVL 1 442 0 5 1067 505 210 20 55 chr1 63211854 63212000 -133983432 - ID_B1 SINE B4 -4 220 80 5 1067 267 29 0 0 chr1 63212000 63212009 -133983423 + (T)n Simple_repeat Simple_repeat 1 9 0 5 1067 932 53 108 43 chr1 63212009 63212148 -133983284 - B1_Mus1 SINE Alu 0 148 1 5 1067 267 29 0 0 chr1 63212148 63212172 -133983260 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1067 658 170 297 0 chr1 63212236 63212401 -133983031 + B3 SINE B2 2 215 -1 5 1067 1077 67 0 0 chr1 63212658 63212793 -133982639 + B1_Mus1 SINE Alu 1 135 -13 5 1067 320 209 50 81 chr1 63213151 63213250 -133982182 + PB1D9 SINE Alu 12 107 -13 5 1067 216 0 0 0 chr1 63213252 63213276 -133982156 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1067 186 43 0 0 chr1 63213518 63213541 -133981891 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1067 344 238 85 54 chr1 63213586 63213715 -133981717 + MLT1A1 LTR MaLR 276 408 0 5 1067 548 188 151 79 chr1 63213770 63213909 -133981523 - B1_Mur3 SINE Alu 0 149 1 5 1067 623 246 22 0 chr1 63213923 63214057 -133981375 - B1_Mur1 SINE Alu -8 141 5 5 1067 347 243 190 42 chr1 63214096 63214238 -133981194 + RSINE1 SINE B4 3 165 0 5 1067 475 239 142 0 chr1 63214302 63214415 -133981017 + RSINE1 SINE B4 21 149 -16 5 1067 341 143 36 0 chr1 63214486 63214542 -133980890 - PB1D9 SINE Alu -62 58 1 5 1067 1275 131 16 0 chr1 63214647 63214838 -133980594 + B2_Mm2 SINE B2 2 195 0 5 1067 646 204 131 65 chr1 63214840 63215039 -133980393 + B4 SINE B4 81 292 0 5 1067 1604 159 130 60 chr1 63215319 63215687 -133979745 + ORR1B1 LTR MaLR 1 394 0 5 1067 288 77 0 0 chr1 63216297 63216336 -133979096 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1067 23 0 0 0 chr1 63216568 63216591 -133978841 + AT_rich Low_complexity Low_complexity 1 23 0 5 1067 844 148 35 0 chr1 63216856 63216998 -133978434 - B1_Mus1 SINE Alu -1 147 1 5 1067 1218 48 0 0 chr1 63217110 63217257 -133978175 - B1_Mm SINE Alu 0 147 1 5 1067 706 29 76 19 chr1 63217291 63217396 -133978036 + B2_Mm2 SINE B2 78 188 -7 5 1067 635 244 86 19 chr1 63217815 63218024 -133977408 + ID_B1 SINE B4 2 224 0 5 1067 276 250 100 0 chr1 63218128 63218208 -133977224 - PB1D9 SINE Alu 0 120 33 5 1067 609 261 71 22 chr1 63218509 63218693 -133976739 + B3 SINE B2 6 198 -18 5 1067 865 181 21 0 chr1 63218705 63218849 -133976583 + B1_Mus2 SINE Alu 1 147 0 5 1067 22 56 0 0 chr1 63218860 63218896 -133976536 + AT_rich Low_complexity Low_complexity 1 36 0 5 1067 431 290 10 0 chr1 63219033 63219133 -133976299 + B3 SINE B2 91 191 -25 6 1067 1794 50 0 22 chr1 63219215 63219442 -133975990 + L1_Mus1 LINE L1 6346 6567 0 6 1067 21 0 0 0 chr1 63219635 63219656 -133975776 + AT_rich Low_complexity Low_complexity 1 21 0 6 1067 249 259 38 0 chr1 63219684 63219815 -133975617 + ORR1B1-int LTR MaLR 619 754 -755 6 1067 1038 29 7 0 chr1 63219717 63219855 -133975577 + B1_Mus2 SINE Alu 9 147 0 6 1067 189 0 0 0 chr1 63219855 63219876 -133975556 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1067 24 0 0 0 chr1 63219935 63219959 -133975473 + AT_rich Low_complexity Low_complexity 1 24 0 6 1067 1368 79 39 0 chr1 63219968 63220146 -133975286 + B2_Mm2 SINE B2 4 188 -7 6 1067 1227 48 0 0 chr1 63220157 63220303 -133975129 + B1_Mm SINE Alu 2 147 0 6 1067 186 43 0 0 chr1 63220303 63220326 -133975106 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1067 911 216 60 6 chr1 63220337 63220519 -133974913 - B3 SINE B2 -24 192 1 6 1067 423 256 11 0 chr1 63220519 63220609 -133974823 - 4.5SRNA scRNA scRNA -3 91 1 6 1067 459 165 3 50 chr1 63220610 63220706 -133974726 - B1_Mus1 SINE Alu -21 99 9 6 1067 1415 74 11 0 chr1 63220954 63221144 -133974288 + B2_Mm1a SINE B2 2 193 0 6 1067 244 367 20 0 chr1 63221546 63221558 -133973874 + ID SINE ID 70 83 -141 6 1067 359 339 9 9 chr1 63221558 63221671 -133973761 + PB1D10 SINE Alu 2 114 -3 6 1067 489 277 14 41 chr1 63221754 63221901 -133973531 - ID_B1 SINE B4 -1 223 81 6 1067 522 258 31 8 chr1 63221992 63222121 -133973311 - RSINE1 SINE B4 -31 134 3 6 1067 305 243 14 14 chr1 63222180 63222251 -133973181 + ID SINE ID 8 78 -146 6 1067 528 232 79 34 chr1 63222520 63222698 -133972734 - B3A SINE B2 -12 186 1 6 1067 746 243 168 0 chr1 63224561 63224787 -133970645 - LFSINE_Vert SINE SINE -43 416 153 6 1067 1134 108 56 17 chr1 63226880 63227058 -133968374 + B2_Mm1t SINE B2 2 186 -7 6 1067 1441 49 32 11 chr1 63227133 63227318 -133968114 - B2_Mm2 SINE B2 -5 190 2 6 1067 651 197 66 0 chr1 63227357 63227494 -133967938 + B1_Mm SINE Alu 1 146 -1 6 1067 227 314 29 0 chr1 63228143 63228213 -133967219 + MLT1H LTR MaLR 109 180 -369 6 1067 1271 112 37 5 chr1 63228682 63228871 -133966561 - B2_Mm2 SINE B2 0 195 1 6 1067 612 284 70 49 chr1 63228908 63229121 -133966311 + B4 SINE B4 1 214 -78 6 1067 201 74 0 0 chr1 63229121 63229148 -133966284 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1067 612 284 70 49 chr1 63229148 63229219 -133966213 + B4 SINE B4 215 290 -2 6 1067 1689 26 0 0 chr1 63230959 63231150 -133964282 + B2_Mm1a SINE B2 1 191 -2 6 1067 1146 58 0 0 chr1 63231339 63231476 -133963956 - B1_Mus2 SINE Alu -10 137 1 6 1067 442 311 7 22 chr1 63231767 63231905 -133963527 - B1F SINE Alu -7 142 7 6 1067 2801 36 0 169 chr1 63231974 63232413 -133963019 + RLTR10B2 LTR ERVK 1 365 0 6 1067 327 204 32 122 chr1 63232486 63232609 -133962823 + MT2B LTR ERVL 146 257 -344 6 1067 881 150 14 0 chr1 63232509 63232649 -133962783 + B1_Mur4 SINE Alu 6 147 -3 6 1067 645 271 17 12 chr1 63232752 63232924 -133962508 - ID_B1 SINE B4 -28 196 24 6 1067 208 184 20 20 chr1 63232927 63232977 -133962455 + CT-rich Low_complexity Low_complexity 2 51 0 6 1067 327 78 0 0 chr1 63233071 63233122 -133962310 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 1067 450 36 0 0 chr1 63233124 63233180 -133962252 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1067 698 230 7 20 chr1 63233258 63233409 -133962023 - RSINE1 SINE B4 -7 158 10 6 1067 216 0 0 0 chr1 63233436 63233460 -133961972 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1067 273 57 0 0 chr1 63233476 63233511 -133961921 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1067 22 35 0 0 chr1 63233513 63233542 -133961890 + AT_rich Low_complexity Low_complexity 1 29 0 6 1067 811 121 7 22 chr1 63233652 63233787 -133961645 - B1_Mur3 SINE Alu 0 149 17 6 1067 496 262 31 23 chr1 63233929 63234058 -133961374 + RSINE1 SINE B4 3 132 -33 6 1067 546 119 0 0 chr1 63234065 63234149 -133961283 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 6 1067 901 227 30 5 chr1 63234231 63234430 -133961002 + B3 SINE B2 3 206 -10 6 1067 22 26 0 25 chr1 63234430 63234450 -133960982 + AT_rich Low_complexity Low_complexity 1 20 0 6 1067 1435 72 0 6 chr1 63234450 63234632 -133960800 + B2_Mm2 SINE B2 1 181 -14 6 1067 22 26 0 25 chr1 63234632 63234651 -133960781 + AT_rich Low_complexity Low_complexity 1 19 0 6 1067 415 282 15 68 chr1 63234651 63234784 -133960648 + RSINE1 SINE B4 12 137 -28 6 1067 24 53 0 0 chr1 63234803 63234841 -133960591 + AT_rich Low_complexity Low_complexity 1 38 0 6 1067 626 219 137 6 chr1 63234909 63234930 -133960502 - B3 SINE B2 0 216 191 6 1067 464 56 0 27 chr1 63234930 63235003 -133960429 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 1067 626 219 137 6 chr1 63235003 63235142 -133960290 - B3 SINE B2 -26 190 36 6 1067 317 261 11 11 chr1 63235331 63235424 -133960008 + MERVL_2A-int LTR ERVL 5656 5748 -13 6 1067 277 267 23 0 chr1 63235431 63235517 -133959915 + MT2A LTR ERVL 1 88 -445 6 1067 584 169 192 8 chr1 63235554 63235679 -133959753 - B1_Mur2 SINE Alu 0 149 2 6 1067 1072 276 53 48 chr1 63235681 63236118 -133959314 + MT2A LTR ERVL 83 521 -12 6 1067 23 0 0 0 chr1 63236171 63236194 -133959238 + AT_rich Low_complexity Low_complexity 1 23 0 6 1067 625 206 178 18 chr1 63236198 63236361 -133959071 - B3 SINE B2 -27 189 1 6 1067 880 159 7 7 chr1 63236367 63236513 -133958919 - B1_Mur2 SINE Alu -2 147 2 6 1067 882 231 35 10 chr1 63236546 63236747 -133958685 - B3 SINE B2 -6 210 5 6 1067 306 182 96 72 chr1 63236773 63236856 -133958576 - B1_Mur4 SINE Alu -1 149 65 6 1067 1129 28 0 7 chr1 63236889 63237035 -133958397 + B2_Mm2 SINE B2 32 176 -19 6 1067 1200 68 0 0 chr1 63238265 63238412 -133957020 + B1_Mus1 SINE Alu 2 148 0 6 1067 211 196 0 0 chr1 63238466 63238512 -133956920 + C-rich Low_complexity Low_complexity 4 49 0 6 1067 524 175 49 66 chr1 63238512 63238634 -133956798 + B1_Mur1 SINE Alu 30 149 0 6 1067 1177 135 0 21 chr1 63238640 63238803 -133956629 + B2_Mm2 SINE B2 1 163 -32 6 1067 414 114 0 0 chr1 63238803 63238882 -133956550 + (CAAG)n Simple_repeat Simple_repeat 2 80 0 6 1067 1177 135 0 21 chr1 63238882 63238907 -133956525 + B2_Mm2 SINE B2 164 185 -10 6 1067 261 263 100 50 chr1 63239070 63239170 -133956262 - PB1D7 SINE Alu -11 109 5 6 1067 576 137 0 0 chr1 63239700 63239802 -133955630 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 1067 281 100 20 0 chr1 63240496 63240546 -133954886 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1067 1320 122 16 0 chr1 63240919 63241107 -133954325 - B2_Mm2 SINE B2 -4 191 1 6 1067 692 218 0 45 chr1 63241481 63241635 -133953797 - B1_Mur1 SINE Alu -2 147 1 6 1067 243 0 0 0 chr1 63241962 63241989 -133953443 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1067 1124 57 14 0 chr1 63241989 63242129 -133953303 - B1_Mur4 SINE Alu -8 142 1 6 1067 1272 105 39 0 chr1 63242135 63242316 -133953116 - B2_Mm2 SINE B2 -6 189 2 6 1067 33 25 0 0 chr1 63242321 63242361 -133953071 + AT_rich Low_complexity Low_complexity 1 40 0 6 1067 1018 111 7 0 chr1 63243159 63243312 -133952120 + B2_Mm1a SINE B2 2 155 -38 6 1067 378 0 0 0 chr1 63243313 63243355 -133952077 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1067 313 203 43 0 chr1 63243431 63243500 -133951932 + B1_Mur4 SINE Alu 3 74 -76 6 1067 462 290 44 37 chr1 63243499 63243635 -133951797 + RSINE1 SINE B4 9 145 -20 6 1067 564 84 0 0 chr1 63243640 63243723 -133951709 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1067 973 49 0 65 chr1 63244064 63244217 -133951215 + B1_Mm SINE Alu 5 147 0 6 1067 908 89 15 0 chr1 63244224 63244359 -133951073 + (GAAA)n Simple_repeat Simple_repeat 3 139 0 6 1067 246 306 56 0 chr1 63244449 63244480 -133950952 - ID_B1 SINE B4 -109 115 2 6 1067 253 243 7 26 chr1 63244480 63244557 -133950875 - BC1_Mm scRNA scRNA -71 81 2 6 1067 1210 42 7 0 chr1 63244586 63244730 -133950702 - B1_Mus1 SINE Alu 0 148 4 6 1067 288 286 28 28 chr1 63245773 63245881 -133949551 + RSINE1 SINE B4 1 108 -57 6 1067 259 136 17 17 chr1 63246302 63246362 -133949070 + CT-rich Low_complexity Low_complexity 2 61 0 6 1067 768 136 0 15 chr1 63246607 63246741 -133948691 + B1_Mus2 SINE Alu 15 146 -1 6 1067 261 109 273 0 chr1 63248502 63248557 -133946875 - URR1B DNA MER1_type -2 223 154 6 1067 1240 108 32 21 chr1 63249029 63249219 -133946213 + B2_Mm2 SINE B2 3 194 -1 6 1067 284 325 16 0 chr1 63249233 63249351 -133946081 + B1F SINE Alu 1 122 -27 6 1067 731 299 73 17 chr1 63250042 63250450 -133944982 + MER54A LTR ERVL 174 604 -297 6 1067 691 240 55 11 chr1 63250533 63250714 -133944718 + Tigger5 DNA MER2_type 54 242 -2164 6 1067 511 235 9 0 chr1 63250710 63250825 -133944607 + Tigger5 DNA MER2_type 2291 2406 0 6 1067 496 234 89 19 chr1 63250825 63250969 -133944463 + MER54A LTR ERVL 691 845 -56 6 1067 304 290 10 10 chr1 63251440 63251541 -133943891 - PB1D7 SINE Alu -13 107 7 6 1067 438 20 0 0 chr1 63251600 63251651 -133943781 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1067 180 0 0 0 chr1 63251883 63251903 -133943529 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1067 360 0 0 0 chr1 63252070 63252110 -133943322 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1067 505 111 0 12 chr1 63252725 63252807 -133942625 + PB1D9 SINE Alu 39 119 -1 6 1067 34 24 0 0 chr1 63252807 63252848 -133942584 + AT_rich Low_complexity Low_complexity 1 41 0 6 1067 534 222 0 9 chr1 63252863 63252972 -133942460 + B1_Mus1 SINE Alu 34 141 -7 6 1067 642 184 41 34 chr1 63252999 63253052 -133942380 + B1_Mur2 SINE Alu 2 55 -94 7 1067 711 35 0 0 chr1 63253058 63253144 -133942288 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 7 1067 1132 63 0 7 chr1 63253144 63253280 -133942152 - B1_Mus2 SINE Alu -10 137 2 7 1067 642 184 41 34 chr1 63253280 63253372 -133942060 + B1_Mur2 SINE Alu 56 148 -1 7 1067 28 29 0 0 chr1 63253580 63253615 -133941817 + AT_rich Low_complexity Low_complexity 1 35 0 7 1067 1283 93 0 72 chr1 63254684 63254893 -133940539 + B2_Mm2 SINE B2 2 195 0 7 1067 1132 279 61 15 chr1 63254930 63255093 -133940339 + L1_Rod LINE L1 5368 5536 -311 7 1067 414 0 0 0 chr1 63255093 63255139 -133940293 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 7 1067 1132 279 61 15 chr1 63255139 63255383 -133940049 + L1_Rod LINE L1 5537 5793 -54 7 1067 209 211 0 0 chr1 63255393 63255431 -133940001 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 7 1067 884 149 35 0 chr1 63255611 63255752 -133939680 + B1_Mus1 SINE Alu 1 146 -2 7 1067 303 71 0 0 chr1 63255754 63255796 -133939636 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 7 1067 904 228 29 0 chr1 63256550 63256756 -133938676 - B3 SINE B2 -4 212 1 7 1067 306 115 0 0 chr1 63256764 63256816 -133938616 + (T)n Simple_repeat Simple_repeat 1 52 0 7 1067 616 267 8 0 chr1 63257145 63257276 -133938156 - RSINE1 SINE B4 -28 137 6 7 1067 243 79 0 0 chr1 63257282 63257320 -133938112 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1067 1016 92 0 14 chr1 63257545 63257689 -133937743 + B1_Mus1 SINE Alu 2 143 -5 7 1067 216 0 0 0 chr1 63257693 63257717 -133937715 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1067 469 204 11 8 chr1 63257741 63257847 -133937585 + B1_Mur1 SINE Alu 33 134 -15 7 1067 488 254 22 30 chr1 63258793 63258927 -133936505 + RSINE1 SINE B4 2 134 -31 7 1067 234 0 0 0 chr1 63258932 63258958 -133936474 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1067 279 0 0 0 chr1 63258959 63258990 -133936442 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1067 363 23 0 0 chr1 63259021 63259065 -133936367 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1067 333 0 0 0 chr1 63259065 63259101 -133936331 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1067 956 142 54 43 chr1 63259545 63259729 -133935703 + B2_Mm2 SINE B2 1 186 -9 7 1067 206 150 0 24 chr1 63260431 63260472 -133934960 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 7 1067 289 365 41 53 chr1 63261213 63261479 -133933953 + Charlie8 DNA MER1_type 11 273 -2155 7 1067 360 43 0 0 chr1 63261897 63261943 -133933489 + (TATG)n Simple_repeat Simple_repeat 2 47 0 7 1067 1366 61 27 22 chr1 63261954 63262139 -133933293 - B2_Mm1a SINE B2 -7 186 1 7 1067 259 325 61 0 chr1 63262165 63262270 -133933162 - PB1D10 SINE Alu -26 123 16 7 1067 461 269 138 27 chr1 63262337 63262597 -133932835 - B4A SINE B4 -2 290 2 7 1067 222 37 0 0 chr1 63262799 63262826 -133932606 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 7 1067 694 208 0 8 chr1 63262944 63263075 -133932357 - B1_Mus2 SINE Alu -16 131 2 7 1067 1185 61 0 13 chr1 63263090 63263239 -133932193 - B1_Mus1 SINE Alu -1 147 1 7 1067 272 231 264 0 chr1 63263239 63263330 -133932102 - B4A SINE B4 -62 230 116 7 1067 217 300 66 11 chr1 63263738 63263829 -133931603 - B4A SINE B4 -171 121 26 7 1067 279 0 0 0 chr1 63263837 63263868 -133931564 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1067 864 151 7 20 chr1 63264040 63264189 -133931243 - B1_Mus1 SINE Alu -1 147 1 7 1067 335 175 0 0 chr1 63264455 63264512 -133930920 + MER97b DNA MER1_type? 802 858 -195 7 1067 224 246 0 28 chr1 63264686 63264757 -133930675 + PB1D10 SINE Alu 49 117 0 7 1067 517 272 0 81 chr1 63264779 63264939 -133930493 + B1_Mur1 SINE Alu 1 147 -2 7 1067 916 217 44 25 chr1 63265107 63265310 -133930122 - B3 SINE B2 -6 210 4 7 1067 267 272 113 28 chr1 63265446 63265552 -133929880 + ID_B1 SINE B4 8 122 -102 7 1067 1679 158 36 39 chr1 63265571 63265927 -133929505 - RMER10B LTR ERVL -42 356 2 7 1067 531 184 209 16 chr1 63265968 63266149 -133929283 + B3A SINE B2 1 209 -7 7 1067 638 150 16 48 chr1 63266216 63266342 -133929090 + B1_Mur1 SINE Alu 28 149 0 7 1067 471 262 78 55 chr1 63266415 63266591 -133928841 - MER34A LTR ERV1 -123 448 262 7 1067 1130 98 121 0 chr1 63266591 63266765 -133928667 - B2_Mm2 SINE B2 0 195 1 7 1067 471 262 78 55 chr1 63266765 63266806 -133928626 - MER34A LTR ERV1 -310 261 226 7 1067 493 136 25 0 chr1 63266861 63266942 -133928490 + B1_Mur3 SINE Alu 61 143 -6 7 1067 454 175 135 10 chr1 63266958 63267062 -133928370 + B1_Mur4 SINE Alu 26 142 -8 7 1067 395 324 0 0 chr1 63267093 63267324 -133928108 + (TA)n Simple_repeat Simple_repeat 1 231 0 7 1067 207 69 0 0 chr1 63267458 63267487 -133927945 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1067 360 0 0 0 chr1 63267561 63267601 -133927831 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1067 246 279 37 25 chr1 63267614 63267695 -133927737 + ID2 SINE ID 2 83 0 7 1067 439 226 117 24 chr1 63267769 63267898 -133927534 - B1F SINE Alu 0 127 4 7 1067 268 158 237 0 chr1 63267909 63267985 -133927447 - L1MB2 LINE L1 -50 6121 6028 7 1067 308 325 9 17 chr1 63268349 63268465 -133926967 + PB1D10 SINE Alu 3 117 0 7 1067 914 23 102 0 chr1 63268472 63268600 -133926832 + B1_Mm SINE Alu 6 146 -1 7 1067 673 216 17 0 chr1 63268617 63268765 -133926667 + GA-rich Low_complexity Low_complexity 2 151 0 7 1067 834 182 0 0 chr1 63268765 63268913 -133926519 + B1_Mus1 SINE Alu 1 148 0 7 1067 673 216 17 0 chr1 63268913 63268940 -133926492 + polypurine Low_complexity Low_complexity 152 179 0 7 1067 602 118 0 154 chr1 63269032 63269162 -133926270 + B1_Mur4 SINE Alu 9 118 -32 7 1067 218 192 0 19 chr1 63269174 63269227 -133926205 + GA-rich Low_complexity Low_complexity 1 52 0 7 1067 783 280 82 30 chr1 63269229 63269498 -133925934 + B4A SINE B4 4 286 -6 7 1067 643 52 124 0 chr1 63269498 63269595 -133925837 - B1_Mm SINE Alu -38 109 1 7 1067 234 0 0 0 chr1 63269710 63269736 -133925696 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1067 305 274 158 0 chr1 63269788 63269883 -133925549 - B1F SINE Alu -37 112 3 7 1067 252 277 177 51 chr1 63269969 63270144 -133925288 + B3A SINE B2 2 198 0 7 1067 271 224 0 0 chr1 63270345 63270403 -133925029 - L1M5 LINE L1 -254 5870 5813 7 1067 300 180 0 90 chr1 63271138 63271205 -133924227 + L1M1 LINE L1 5408 5468 -835 7 1067 1112 64 43 0 chr1 63271248 63271389 -133924043 + B1_Mus2 SINE Alu 1 147 0 7 1067 1946 278 73 25 chr1 63271475 63272260 -133923172 + L1MA6 LINE L1 5474 6295 -5 7 1067 189 0 0 0 chr1 63272815 63272836 -133922596 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1067 315 104 0 0 chr1 63272969 63273017 -133922415 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 7 1067 365 278 46 9 chr1 63273513 63273622 -133921810 - PB1D10 SINE Alu -1 116 4 7 1067 1277 36 0 23 chr1 63274574 63274745 -133920687 + B2_Mm2 SINE B2 2 168 -27 7 1067 320 125 13 51 chr1 63274878 63274946 -133920486 - B2_Mm2 SINE B2 -82 116 46 7 1067 1245 107 11 0 chr1 63274993 63275171 -133920261 - B2_Mm1a SINE B2 -12 181 2 7 1067 283 274 14 0 chr1 63275727 63275800 -133919632 + ID SINE ID 3 76 -148 7 1067 459 0 0 0 chr1 63275802 63275853 -133919579 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 7 1067 530 235 25 25 chr1 63275916 63276034 -133919398 + PB1D7 SINE Alu 3 120 0 7 1067 489 308 7 0 chr1 63276080 63276223 -133919209 + B1F2 SINE Alu 1 144 -5 7 1067 305 47 0 23 chr1 63276230 63276274 -133919158 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1067 664 257 155 28 chr1 63276284 63276536 -133918896 + B4 SINE B4 2 285 -7 7 1067 345 62 0 0 chr1 63276651 63276699 -133918733 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1067 324 311 0 0 chr1 63277366 63277469 -133917963 + B1F1 SINE Alu 42 144 -5 7 1067 2584 45 3 0 chr1 63277530 63277867 -133917565 + ORR1A1 LTR MaLR 1 338 -8 7 1067 14032 52 17 0 chr1 63277871 63279633 -133915799 + ORR1A1-int LTR MaLR 1 1792 0 7 1067 2850 49 6 0 chr1 63279633 63279977 -133915455 + ORR1A1 LTR MaLR 1 346 0 7 1067 368 0 0 41 chr1 63280133 63280182 -133915250 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 1067 1125 76 0 0 chr1 63280183 63280341 -133915091 - B2_Mm2 SINE B2 -37 158 1 7 1067 1571 57 0 0 chr1 63280655 63280848 -133914584 + B2_Mm1a SINE B2 1 193 0 7 1067 773 182 13 45 chr1 63281040 63281195 -133914237 + B1_Mur4 SINE Alu 1 150 0 7 1067 2047 210 33 15 chr1 63281200 63281597 -133913835 - Lx6 LINE L1 -18 7442 7039 7 1067 721 230 14 0 chr1 63281673 63281821 -133913611 + RSINE1 SINE B4 8 157 -8 7 1067 1005 223 19 0 chr1 63282702 63282908 -133912524 - B3 SINE B2 -5 211 2 7 1067 867 282 65 3 chr1 63282949 63283373 -133912059 - Lx7 LINE L1 -1598 6098 5600 7 1067 319 319 46 70 chr1 63284021 63284280 -133911152 + LTR16E1 LTR ERVL 278 530 -8 7 1067 432 252 40 94 chr1 63285292 63285311 -133910121 + B4 SINE B4 77 214 -75 7 1067 919 71 0 0 chr1 63285311 63285438 -133909994 + B1_Mus1 SINE Alu 10 136 -12 7 1067 240 35 0 0 chr1 63285441 63285470 -133909962 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1067 509 245 54 61 chr1 63285656 63285804 -133909628 - B1F1 SINE Alu -2 147 1 7 1067 234 289 35 35 chr1 63285807 63285893 -133909539 + Charlie4z DNA MER1_type 81 166 -1 7 1067 22 35 0 0 chr1 63286668 63286697 -133908735 + AT_rich Low_complexity Low_complexity 1 29 0 7 1067 183 80 0 0 chr1 63286715 63286740 -133908692 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1067 512 275 20 27 chr1 63286794 63286940 -133908492 - B1F SINE Alu -1 148 4 8 1067 426 177 0 143 chr1 63287214 63287326 -133908106 + B1F1 SINE Alu 28 123 -26 8 1067 212 240 42 0 chr1 63287332 63287428 -133908004 + (TA)n Simple_repeat Simple_repeat 1 100 0 8 1067 396 0 0 0 chr1 63287557 63287601 -133907831 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1067 608 160 0 19 chr1 63287606 63287714 -133907718 - B1_Mus2 SINE Alu -40 107 2 8 1067 395 38 19 0 chr1 63287724 63287777 -133907655 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 8 1067 1002 112 0 0 chr1 63287780 63287914 -133907518 - B1_Mus1 SINE Alu -13 135 2 8 1067 640 223 50 0 chr1 63287959 63288098 -133907334 - B1_Mus1 SINE Alu -1 147 2 8 1067 1062 63 0 0 chr1 63288284 63288426 -133907006 + B2_Mm1a SINE B2 2 143 -50 8 1067 776 160 197 17 chr1 63288785 63288963 -133906469 + B3 SINE B2 5 214 -2 8 1067 914 226 20 5 chr1 63288965 63289165 -133906267 - B3 SINE B2 -13 203 1 8 1067 201 74 0 0 chr1 63289284 63289311 -133906121 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1067 258 256 79 102 chr1 63289325 63289439 -133905993 - B3A SINE B2 -56 160 33 8 1067 1625 26 0 40 chr1 63289439 63289639 -133905793 - B2_Mm1a SINE B2 0 193 2 8 1067 258 236 29 114 chr1 63289639 63289672 -133905760 - B3A SINE B2 -164 34 1 8 1067 928 187 0 0 chr1 63289740 63289890 -133905542 - B1_Mur4 SINE Alu 0 150 1 8 1067 455 268 83 44 chr1 63289897 63290077 -133905355 - B3A SINE B2 -1 197 11 8 1067 706 199 59 0 chr1 63291126 63291262 -133904170 + B1_Mur4 SINE Alu 2 145 -5 8 1067 1279 20 0 0 chr1 63291345 63291492 -133903940 - B1_Mus2 SINE Alu 0 147 1 8 1067 269 164 0 18 chr1 63291586 63291642 -133903790 - B2_Mm2 SINE B2 -94 101 47 8 1067 830 103 130 7 chr1 63291710 63291856 -133903576 - B2_Mm1t SINE B2 -15 178 15 8 1067 329 320 160 0 chr1 63292192 63292373 -133903059 + ID_B1 SINE B4 1 210 -14 8 1067 770 253 3 141 chr1 63293713 63294054 -133901378 - LTR31 LTR ERV1 -182 437 144 8 1067 627 255 68 60 chr1 63294372 63294622 -133900810 - MER21B LTR ERV1 -145 718 467 8 1067 331 241 50 33 chr1 63294517 63294637 -133900795 - MER77 LTR ERVL -4 603 482 8 1067 192 97 0 0 chr1 63295782 63295813 -133899619 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1067 270 0 0 0 chr1 63296564 63296594 -133898838 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 1067 216 0 0 0 chr1 63296594 63296617 -133898815 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1067 779 31 0 10 chr1 63296937 63297036 -133898396 + (TTC)n Simple_repeat Simple_repeat 2 99 0 8 1067 239 319 34 42 chr1 63297565 63297683 -133897749 + PB1D10 SINE Alu 1 117 0 8 1067 436 59 29 0 chr1 63297847 63297915 -133897517 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1067 268 262 25 12 chr1 63300147 63300228 -133895204 - B4 SINE B4 -209 83 2 8 1067 404 237 50 241 chr1 63300272 63300314 -133895118 - B3 SINE B2 -3 213 171 8 1067 186 43 0 0 chr1 63300314 63300337 -133895095 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1067 404 237 50 241 chr1 63300337 63300419 -133895013 - B3 SINE B2 -46 170 101 8 1067 744 191 13 39 chr1 63300419 63300572 -133894860 + B1_Mur3 SINE Alu 1 149 0 8 1067 404 237 50 241 chr1 63300572 63300707 -133894725 - B3 SINE B2 -116 100 3 8 1067 23 0 0 0 chr1 63300712 63300735 -133894697 + AT_rich Low_complexity Low_complexity 1 23 0 8 1067 1628 26 5 10 chr1 63300735 63300929 -133894503 - B2_Mm1t SINE B2 0 193 1 8 1067 1240 115 27 11 chr1 63300935 63301119 -133894313 - B2_Mm2 SINE B2 -8 187 1 8 1067 216 0 0 0 chr1 63301482 63301506 -133893926 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1067 344 91 18 0 chr1 63301747 63301802 -133893630 - B1_Mm SINE Alu -1 146 91 8 1067 300 286 160 26 chr1 63302587 63302766 -133892666 - MER54A LTR ERVL -5 896 692 8 1067 457 276 0 0 chr1 63302766 63302882 -133892550 - Tigger5 DNA MER2_type 0 2406 2291 8 1067 616 259 57 11 chr1 63302878 63303054 -133892378 - Tigger5 DNA MER2_type -2164 242 59 8 1067 686 280 142 10 chr1 63303107 63303616 -133891816 - MER54A LTR ERVL -206 695 120 8 1067 183 80 0 0 chr1 63303820 63303845 -133891587 + (CAAG)n Simple_repeat Simple_repeat 3 27 0 8 1067 284 225 0 101 chr1 63303947 63304026 -133891406 + ID4_ SINE ID 4 74 -9 8 1067 423 0 0 0 chr1 63304518 63304565 -133890867 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1067 204 40 0 0 chr1 63304565 63304589 -133890843 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1067 245 29 29 0 chr1 63304675 63304709 -133890723 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1067 352 329 75 27 chr1 63304720 63304867 -133890565 - RSINE1 SINE B4 -9 156 3 8 1067 183 139 0 0 chr1 63304874 63304910 -133890522 + (TTA)n Simple_repeat Simple_repeat 1 36 0 8 1067 608 184 26 0 chr1 63304934 63305048 -133890384 - B1_Mur3 SINE Alu -29 120 4 8 1067 327 167 0 0 chr1 63305088 63305142 -133890290 - Lx8 LINE L1 -388 7085 7032 8 1067 902 143 227 6 chr1 63305383 63305559 -133889873 - B3 SINE B2 0 216 2 8 1067 417 244 130 0 chr1 63307440 63307555 -133887877 + RSINE1 SINE B4 9 138 -27 8 1067 298 217 0 14 chr1 63307606 63307676 -133887756 - MER67B LTR ERV1 -26 635 567 8 1068 21 0 0 0 chr1 63308204 63308225 -133887207 + AT_rich Low_complexity Low_complexity 1 21 0 8 1068 216 158 0 0 chr1 63308239 63308277 -133887155 + (CCG)n Simple_repeat Simple_repeat 2 39 0 8 1068 892 99 35 21 chr1 63308563 63308707 -133886725 - B1_Mus1 SINE Alu -1 147 2 8 1068 216 0 0 0 chr1 63308716 63308740 -133886692 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1068 370 291 70 14 chr1 63309906 63310049 -133885383 - MER67B LTR ERV1 -405 256 106 8 1068 412 319 28 0 chr1 63310565 63310709 -133884723 + RSINE1 SINE B4 3 150 -15 8 1068 225 288 190 32 chr1 63311129 63311287 -133884145 - MER74A LTR ERVL -248 310 128 8 1068 285 98 0 0 chr1 63311326 63311367 -133884065 + (CGTG)n Simple_repeat Simple_repeat 1 41 0 8 1068 411 21 0 0 chr1 63311535 63311583 -133883849 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1068 318 177 108 59 chr1 63312482 63312584 -133882848 - B1_Mur2 SINE Alu -1 148 42 8 1068 213 152 0 21 chr1 63313214 63313261 -133882171 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 8 1068 214 152 0 42 chr1 63314329 63314377 -133881055 + A-rich Low_complexity Low_complexity 1 46 0 8 1068 1294 302 62 29 chr1 63315373 63315848 -133879584 - Lx8 LINE L1 -9 7464 6981 8 1068 186 43 0 0 chr1 63315848 63315871 -133879561 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 8 1068 1294 302 62 29 chr1 63315871 63315914 -133879518 - Lx8 LINE L1 -493 6980 6931 8 1068 589 271 0 15 chr1 63316559 63316694 -133878738 - RSINE1 SINE B4 -31 134 2 8 1068 426 262 73 28 chr1 63317367 63317544 -133877888 - Kanga1d DNA Tc2 -178 431 247 8 1068 273 226 129 12 chr1 63317559 63317644 -133877788 + RSINE1 SINE B4 34 128 -37 8 1068 360 0 0 0 chr1 63318015 63318055 -133877377 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1068 267 306 61 10 chr1 63318055 63318154 -133877278 - PB1D10 SINE Alu -11 106 3 8 1068 357 238 103 81 chr1 63318500 63318690 -133876742 - Kanga1d DNA Tc2 -528 201 1 8 1068 362 275 0 21 chr1 63318946 63319039 -133876393 + PB1D10 SINE Alu 22 112 -5 8 1068 35 24 0 0 chr1 63319707 63319749 -133875683 + GC_rich Low_complexity Low_complexity 1 42 0 8 1068 189 0 0 0 chr1 63319875 63319896 -133875536 + (CTCCG)n Simple_repeat Simple_repeat 2 22 0 8 1068 23 33 0 0 chr1 63319902 63319932 -133875500 + GC_rich Low_complexity Low_complexity 1 30 0 8 1068 25 65 0 0 chr1 63319974 63320020 -133875412 + GC_rich Low_complexity Low_complexity 1 46 0 8 1068 30 45 0 0 chr1 63320253 63320297 -133875135 + GC_rich Low_complexity Low_complexity 1 44 0 8 1068 195 129 0 0 chr1 63321158 63321189 -133874243 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1068 28 79 0 0 chr1 63321404 63321467 -133873965 + AT_rich Low_complexity Low_complexity 1 63 0 8 1068 218 145 108 68 chr1 63321588 63321662 -133873770 + MIRb SINE MIR 192 268 0 8 1068 488 241 8 25 chr1 63321927 63322046 -133873386 - PB1D10 SINE Alu 0 117 1 8 1068 427 88 29 0 chr1 63322275 63322343 -133873089 + BC1_Mm scRNA scRNA 1 70 -82 8 1068 279 54 0 0 chr1 63322735 63322772 -133872660 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 8 1068 192 40 0 0 chr1 63322799 63322824 -133872608 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1068 29 47 0 0 chr1 63322843 63322886 -133872546 + AT_rich Low_complexity Low_complexity 1 43 0 8 1068 23 0 0 0 chr1 63323228 63323251 -133872181 + AT_rich Low_complexity Low_complexity 1 23 0 8 1068 234 246 18 0 chr1 63325389 63325446 -133869986 + B1F1 SINE Alu 1 58 -91 8 1068 417 86 0 0 chr1 63325675 63325733 -133869699 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 8 1068 180 0 0 0 chr1 63325855 63325875 -133869557 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1068 288 0 0 0 chr1 63325875 63325906 -133869526 + (GA)n Simple_repeat Simple_repeat 2 33 0 8 1068 356 276 10 10 chr1 63326622 63326721 -133868711 + PB1D10 SINE Alu 1 99 -18 8 1068 385 285 87 7 chr1 63327120 63327258 -133868174 + B1F SINE Alu 1 149 0 8 1068 180 347 39 39 chr1 63327531 63327687 -133867745 - L2a LINE L2 -1 3425 3270 8 1068 267 31 0 0 chr1 63327799 63327831 -133867601 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 1068 253 294 114 87 chr1 63327921 63327936 -133867496 + B4 SINE B4 70 220 -70 8 1068 583 206 91 8 chr1 63327936 63328068 -133867364 + B1_Mur1 SINE Alu 1 143 -6 8 1068 251 356 15 8 chr1 63328077 63328210 -133867222 - L2a LINE L2 -514 2905 2772 8 1068 507 107 0 0 chr1 63328213 63328288 -133867144 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1068 3048 208 96 19 chr1 63328288 63329226 -133866206 - L1MB7 LINE L1 -16 6168 5152 8 1068 405 284 9 9 chr1 63329226 63329336 -133866096 + PB1D10 SINE Alu 2 111 -6 8 1068 903 277 72 6 chr1 63329609 63329929 -133865503 - L1MB7 LINE L1 -1037 5109 4769 8 1068 703 249 138 4 chr1 63329944 63330198 -133865234 - L1MA5 LINE L1 -5 6997 6710 8 1068 1033 265 103 23 chr1 63330225 63330700 -133864732 - L1MA5 LINE L1 -528 6474 5962 8 1068 420 261 0 26 chr1 63330706 63330820 -133864612 + ID_B1 SINE B4 112 222 -2 9 1068 758 280 120 134 chr1 63331117 63331163 -133864269 - L1MA5 LINE L1 -1085 5760 5710 8 1068 1800 165 32 80 chr1 63331163 63331564 -133863868 - ORR1C2 LTR MaLR 0 384 3 9 1068 758 280 120 134 chr1 63331564 63331665 -133863767 - L1MA5 LINE L1 -1136 5709 5644 8 1068 628 231 69 0 chr1 63331665 63331795 -133863637 - B1_Mur2 SINE Alu -10 139 1 9 1068 758 280 120 134 chr1 63331795 63332346 -133863086 - L1MA5 LINE L1 -1202 5643 5016 8 1068 1494 69 5 0 chr1 63332346 63332535 -133862897 - B2_Mm1t SINE B2 -3 190 1 9 1068 875 280 120 134 chr1 63332535 63332685 -133862747 - L1MA5 LINE L1 -1830 5015 4858 8 1068 503 260 0 0 chr1 63332685 63332781 -133862651 + B3 SINE B2 107 202 -14 9 1068 875 280 120 134 chr1 63332781 63333218 -133862214 - L1MA5 LINE L1 -1830 4857 4396 8 1068 896 259 151 67 chr1 63333235 63335026 -133860406 - L1MA5 LINE L1 -2615 4230 2291 8 1068 232 277 71 12 chr1 63335038 63335122 -133860310 - ORR1D2 LTR MaLR -12 367 279 9 1068 263 247 82 0 chr1 63335292 63335365 -133860067 - ORR1D2 LTR MaLR -275 95 17 9 1068 307 222 204 6 chr1 63335696 63335868 -133859564 - L1MB7 LINE L1 -1686 4460 4255 8 1068 463 268 99 5 chr1 63335957 63336178 -133859254 - L1MB7 LINE L1 -2028 4118 3877 8 1068 327 271 58 17 chr1 63336191 63336311 -133859121 - MLT1B LTR MaLR 0 390 266 9 1068 25 65 0 0 chr1 63336819 63336865 -133858567 + AT_rich Low_complexity Low_complexity 1 46 0 9 1068 289 0 49 0 chr1 63336962 63337003 -133858429 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1068 230 0 33 0 chr1 63337003 63337033 -133858399 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1068 238 265 15 0 chr1 63337042 63337110 -133858322 + L1ME3B LINE L1 244 312 -5930 9 1068 1002 188 29 8 chr1 63337139 63337381 -133858051 + L1ME3B LINE L1 1501 1747 -4495 9 1068 430 283 89 16 chr1 63337399 63337589 -133857843 + L1ME3B LINE L1 1840 2043 -4123 9 1068 353 336 16 31 chr1 63337966 63338095 -133857337 + PB1 SINE Alu 1 127 0 9 1068 309 232 183 36 chr1 63338161 63338269 -133857163 + L1ME3B LINE L1 4357 4472 -1674 9 1068 408 171 0 41 chr1 63338269 63338342 -133857090 + ID4_ SINE ID 3 72 -11 9 1068 309 232 183 36 chr1 63338342 63338403 -133857029 + L1ME3B LINE L1 4473 4558 -1588 9 1068 1356 36 54 0 chr1 63338403 63338571 -133856861 + B2_Mm1a SINE B2 2 178 -15 9 1068 309 232 183 36 chr1 63338571 63338619 -133856813 + L1ME3B LINE L1 4559 4607 -1539 9 1068 368 311 165 44 chr1 63338894 63339210 -133856222 + L1ME3B LINE L1 4980 5333 -813 9 1068 471 275 9 9 chr1 63339213 63339323 -133856109 + PB1D10 SINE Alu 6 115 -2 9 1068 343 316 120 34 chr1 63339433 63339901 -133855531 + L1ME3B LINE L1 5432 5939 -301 9 1068 181 261 149 30 chr1 63340514 63340581 -133854851 + MIRc SINE MIR 19 93 -175 9 1068 189 0 0 0 chr1 63340611 63340632 -133854800 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1068 28 29 0 0 chr1 63340984 63341019 -133854413 + AT_rich Low_complexity Low_complexity 1 35 0 9 1068 222 236 39 77 chr1 63341682 63341760 -133853672 - B1F SINE Alu -21 128 54 9 1068 300 274 27 0 chr1 63341826 63341899 -133853533 - ID4 SINE ID -4 79 5 9 1068 620 226 147 26 chr1 63342088 63342279 -133853153 + B3 SINE B2 1 214 -2 9 1068 575 288 23 29 chr1 63342361 63342533 -133852899 - B4A SINE B4 -116 176 6 9 1068 226 281 0 58 chr1 63342563 63342650 -133852782 + ID4_ SINE ID 2 83 0 9 1068 450 0 0 0 chr1 63342732 63342782 -133852650 + (T)n Simple_repeat Simple_repeat 1 50 0 9 1068 286 336 88 37 chr1 63342981 63343117 -133852315 - RSINE1 SINE B4 -19 146 4 9 1068 1162 55 0 7 chr1 63343398 63343546 -133851886 - B1_Mus2 SINE Alu 0 147 1 9 1068 1736 170 36 90 chr1 63343673 63344060 -133851372 - ORR1D1 LTR MaLR -8 366 1 9 1068 1081 114 6 12 chr1 63344148 63344316 -133851116 + URR1B DNA MER1_type 59 225 0 9 1068 838 150 14 35 chr1 63344598 63344743 -133850689 + B1_Mur4 SINE Alu 4 145 -5 9 1068 464 262 107 6 chr1 63344792 63344961 -133850471 - L1MC4a LINE L1 -337 7545 7360 9 1068 225 188 0 0 chr1 63345221 63345269 -133850163 + T-rich Low_complexity Low_complexity 1 48 0 9 1068 1241 27 0 7 chr1 63345271 63345419 -133850013 - B1_Mm SINE Alu 0 147 1 9 1068 539 244 165 0 chr1 63345842 63346018 -133849414 + B3 SINE B2 2 206 -10 9 1068 747 230 22 7 chr1 63346097 63346233 -133849199 + B3A SINE B2 15 152 -46 9 1068 351 0 0 0 chr1 63346256 63346295 -133849137 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1068 1141 35 21 0 chr1 63346318 63346462 -133848970 + B1_Mm SINE Alu 1 147 0 9 1068 192 77 0 0 chr1 63346573 63346599 -133848833 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 9 1068 414 177 0 71 chr1 63346622 63346707 -133848725 - ID_B1 SINE B4 0 224 146 9 1068 627 133 0 0 chr1 63346631 63346721 -133848711 - B1_Mur1 SINE Alu -6 143 54 9 1068 551 183 29 0 chr1 63346853 63346957 -133848475 - U6 snRNA snRNA 0 107 1 9 1068 315 265 110 20 chr1 63346960 63347060 -133848372 - PB1D10 SINE Alu -2 115 7 9 1068 277 247 74 0 chr1 63346991 63347072 -133848360 - MT2B2 LTR ERVL -340 244 158 9 1068 669 252 80 47 chr1 63347079 63347354 -133848078 - B4A SINE B4 -6 286 3 9 1068 713 181 7 74 chr1 63347429 63347578 -133847854 + B1_Mur2 SINE Alu 5 143 -6 9 1068 1415 56 22 0 chr1 63347711 63347890 -133847542 - B2_Mm1a SINE B2 -9 184 2 9 1068 329 297 39 19 chr1 63348426 63348529 -133846903 + PB1 SINE Alu 5 109 -18 9 1068 860 139 120 12 chr1 63348556 63348723 -133846709 + B2_Mm2 SINE B2 5 189 -6 9 1068 363 282 0 0 chr1 63348864 63348942 -133846490 - ID SINE ID -146 78 1 9 1068 189 107 0 0 chr1 63349235 63349263 -133846169 + (CAG)n Simple_repeat Simple_repeat 3 30 0 9 1068 441 151 0 0 chr1 63350167 63350253 -133845179 + GA-rich Low_complexity Low_complexity 1 86 0 9 1068 43 120 0 0 chr1 63355757 63356031 -133839401 + GC_rich Low_complexity Low_complexity 1 274 0 9 1068 50 111 0 0 chr1 63355943 63356168 -133839264 + GC_rich Low_complexity Low_complexity 1 225 0 9 1068 225 164 214 18 chr1 63357793 63357849 -133837583 - Kanga1c DNA Tc2 -659 70 4 9 1068 240 35 0 0 chr1 63358844 63358873 -133836559 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 9 1068 24 32 0 0 chr1 63358883 63358914 -133836518 + AT_rich Low_complexity Low_complexity 1 31 0 9 1068 260 296 42 0 chr1 63360293 63360381 -133835051 - ID4 SINE ID -57 95 2 9 1068 492 254 198 0 chr1 63360806 63361129 -133834303 - L1MC4 LINE L1 -259 7783 7397 9 1068 22 0 0 0 chr1 63361163 63361185 -133834247 + AT_rich Low_complexity Low_complexity 1 22 0 9 1068 260 284 0 56 chr1 63361448 63361519 -133833913 + PB1D10 SINE Alu 10 76 -41 9 1068 411 193 6 44 chr1 63361564 63361661 -133833771 + PB1D10 SINE Alu 35 149 0 9 1068 362 210 127 29 chr1 63362360 63362521 -133832911 + L1MA9 LINE L1 5791 5964 -327 9 1068 908 302 123 38 chr1 63363427 63364035 -133831397 + L1M4 LINE L1 313 972 -5570 9 1068 275 250 59 0 chr1 63364064 63364132 -133831300 + ID2 SINE ID 1 72 -11 9 1068 23 33 0 0 chr1 63364339 63364369 -133831063 + AT_rich Low_complexity Low_complexity 1 30 0 9 1068 274 219 171 0 chr1 63364377 63364482 -133830950 + L1M4 LINE L1 1077 1199 -5343 9 1068 1140 258 79 58 chr1 63364542 63364593 -133830839 - MT2B LTR ERVL 0 601 531 9 1068 267 31 0 0 chr1 63364593 63364625 -133830807 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1068 1140 226 93 92 chr1 63364625 63365033 -133830399 - MT2B LTR ERVL -71 530 1 9 1068 1377 159 81 8 chr1 63365596 63365855 -133829577 + ORR1B2 LTR MaLR 32 309 -58 9 1068 180 0 0 0 chr1 63365856 63365876 -133829556 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1068 1886 72 38 0 chr1 63365876 63366138 -133829294 - RLTR1B LTR ERV1 -76 436 165 9 1068 3058 37 11 8 chr1 63366163 63366544 -133828888 - L1Md_F3 LINE L1 -14 6570 6189 9 1068 1443 45 0 0 chr1 63366544 63366722 -133828710 - RLTR1B LTR ERV1 -334 178 1 9 1068 2616 48 18 15 chr1 63366722 63367419 -133828013 - RLTR1B-int LTR ERV1 0 3299 2590 9 1068 7833 64 37 30 chr1 63367409 63369572 -133825860 - RLTR1B-int LTR ERV1 -1191 2108 1 9 1068 1129 99 6 6 chr1 63369572 63369735 -133825697 - RLTR1B LTR ERV1 0 512 350 9 1068 444 169 0 0 chr1 63369731 63369814 -133825618 + ORR1B2 LTR MaLR 312 394 0 9 1068 359 131 40 24 chr1 63370157 63370282 -133825150 + (CCCTAA)n Simple_repeat Simple_repeat 2 128 0 9 1068 2409 75 171 3 chr1 63370285 63370672 -133824760 + RLTR44C LTR ERVK 1 452 -50 9 1068 314 45 23 0 chr1 63370692 63370736 -133824696 + (CCCTAA)n Simple_repeat Simple_repeat 2 46 0 9 1068 436 310 26 65 chr1 63371783 63371938 -133823494 + LTR75 LTR ERVL 1 149 -413 9 1068 810 310 64 40 chr1 63372152 63372478 -133822954 + LTR75 LTR ERVL 195 528 -34 9 1068 1828 259 95 65 chr1 63372498 63373066 -133822366 - RMER17B LTR ERVK -53 905 441 9 1068 459 52 0 0 chr1 63373066 63373124 -133822308 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 1068 1828 250 110 62 chr1 63373124 63373150 -133822282 - RMER17B LTR ERVK -518 440 412 9 1068 991 70 25 6 chr1 63373150 63373309 -133822123 + (GA)n Simple_repeat Simple_repeat 1 162 0 9 1068 1828 250 110 62 chr1 63373309 63373685 -133821747 - RMER17B LTR ERVK -547 411 4 9 1068 24 32 0 0 chr1 63373878 63373909 -133821523 + AT_rich Low_complexity Low_complexity 1 31 0 9 1068 371 205 688 0 chr1 63373992 63374152 -133821280 - ORR1D1 LTR MaLR -101 273 4 9 1068 4711 142 86 19 chr1 63374268 63375188 -133820244 - Lx5 LINE L1 -481 6569 5588 9 1068 8119 115 23 36 chr1 63375203 63375342 -133820090 + L1_Mur2 LINE L1 3127 3272 -2605 9 1068 2430 173 62 23 chr1 63375342 63375828 -133819604 + RLTR16 LTR ERVK 1 505 0 9 1068 8119 115 23 36 chr1 63375828 63376409 -133819023 + L1_Mur2 LINE L1 3273 3848 -2029 9 1068 727 73 264 0 chr1 63376409 63376519 -133818913 + B1_Mus1 SINE Alu 2 140 -8 9 1068 8119 115 23 36 chr1 63376519 63377244 -133818188 + L1_Mur2 LINE L1 3849 4554 -1323 9 1068 22 56 0 0 chr1 63377278 63377314 -133818118 + AT_rich Low_complexity Low_complexity 1 36 0 9 1068 225 237 0 0 chr1 63377321 63377380 -133818052 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 1068 1243 279 37 63 chr1 63377380 63377762 -133817670 - MTEa LTR MaLR -5 374 3 9 1068 250 274 0 0 chr1 63377765 63377827 -133817605 - MTEa-int LTR MaLR -2 1578 1517 9 1068 880 213 53 5 chr1 63377831 63378020 -133817412 - B3 SINE B2 -11 205 8 9 1068 2016 258 17 17 chr1 63378001 63378470 -133816962 - MTEa-int LTR MaLR -163 1417 949 9 1068 3576 164 176 57 chr1 63378479 63379269 -133816163 + RMER19B LTR ERVK 1 886 -16 9 1068 1234 54 0 0 chr1 63379269 63379417 -133816015 + B1_Mus1 SINE Alu 1 148 0 9 1068 189 0 0 0 chr1 63379421 63379442 -133815990 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1068 1433 272 31 11 chr1 63379467 63379816 -133815616 - MTEa-int LTR MaLR -638 942 587 9 1068 707 264 28 181 chr1 63379818 63380002 -133815430 + ORR1E LTR MaLR 1 145 -214 9 1068 1177 69 0 0 chr1 63380002 63380147 -133815285 - B1_Mm SINE Alu -2 145 1 9 1068 707 264 95 63 chr1 63380147 63380264 -133815168 + ORR1E LTR MaLR 146 292 -87 9 1068 24 0 0 0 chr1 63380455 63380479 -133814953 + AT_rich Low_complexity Low_complexity 1 24 0 9 1068 321 303 0 0 chr1 63381363 63381452 -133813980 + PB1D10 SINE Alu 27 115 -2 9 1068 5898 79 19 14 chr1 63381593 63383237 -133812195 - L1VL2 LINE L1 -1789 1826 173 9 1068 551 277 12 66 chr1 63383287 63383453 -133811979 - MTE2b LTR MaLR -76 303 147 9 1068 722 239 93 72 chr1 63383479 63383756 -133811676 - RLTR15 LTR ERVK -18 341 64 9 1068 3931 42 0 4 chr1 63383756 63384275 -133811157 - L1Md_F2 LINE L1 0 6582 6092 9 1068 722 239 93 72 chr1 63384275 63384330 -133811102 - RLTR15 LTR ERVK -296 63 2 9 1068 338 247 22 56 chr1 63384330 63384416 -133811016 - MTE2b LTR MaLR -255 124 42 9 1068 269 276 29 39 chr1 63384505 63384607 -133810825 - HERV16-int LTR ERVL -1550 3446 3346 9 1068 320 314 50 0 chr1 63384797 63384918 -133810514 - HERV16-int LTR ERVL -3580 1416 1290 9 1068 493 352 59 0 chr1 63384967 63385203 -133810229 - HERV16-int LTR ERVL -3776 1220 971 9 1068 314 385 14 5 chr1 63385627 63385849 -133809583 - HERV16-int LTR ERVL -4543 453 230 9 1068 298 404 88 21 chr1 63386212 63386404 -133809028 - LTR16B1 LTR ERVL -267 213 9 9 1068 189 0 0 0 chr1 63386943 63386964 -133808468 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 9 1068 955 161 0 7 chr1 63386964 63387114 -133808318 - B2_Mm2 SINE B2 -38 157 9 1 1068 18722 120 34 7 chr1 63387121 63389404 -133806028 - L1_Mus3 LINE L1 0 6638 4332 1 1068 574 50 58 8 chr1 63389404 63389525 -133805907 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 1068 18722 162 145 24 chr1 63389525 63390108 -133805324 - L1_Mus3 LINE L1 -1552 4331 3543 1 1068 1168 53 0 0 chr1 63390108 63390240 -133805192 + B1_Mus1 SINE Alu 2 133 -15 1 1068 18722 142 133 18 chr1 63390240 63392960 -133802472 - L1_Mus3 LINE L1 -2341 3542 435 1 1068 1775 21 0 10 chr1 63392992 63393187 -133802245 + B2_Mm1a SINE B2 1 193 0 1 1068 303 173 39 0 chr1 63393199 63393251 -133802181 + B1_Mur4 SINE Alu 2 55 -95 1 1068 354 154 165 62 chr1 63393318 63393415 -133802017 + B1_Mm SINE Alu 41 147 0 1 1068 6965 196 70 88 chr1 63393465 63393828 -133801604 - Lx7 LINE L1 -7 7689 7347 1 1068 222 37 0 0 chr1 63393828 63393855 -133801577 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1068 6965 196 70 88 chr1 63393855 63394954 -133800478 - Lx7 LINE L1 -350 7346 6184 1 1068 494 138 11 44 chr1 63394954 63395045 -133800387 - MTA_Mm LTR MaLR -281 115 28 1 1068 6965 196 70 88 chr1 63395045 63395288 -133800144 - Lx7 LINE L1 -350 6183 5925 1 1068 8770 133 13 25 chr1 63395325 63395482 -133799950 - L1_Mur3 LINE L1 -1321 4559 4401 1 1068 3358 68 2 2 chr1 63395482 63395882 -133799550 - MTB LTR MaLR 0 400 1 1 1068 8770 133 13 25 chr1 63395882 63397227 -133798205 - L1_Mur3 LINE L1 -1480 4400 3074 1 1068 247 348 47 0 chr1 63397403 63397552 -133797880 - L1MB8 LINE L1 -180 5994 5838 1 1068 420 257 55 11 chr1 63397552 63397661 -133797771 - B1_Mur2 SINE Alu -11 109 2 1 1068 326 219 55 45 chr1 63397662 63397772 -133797660 - L1MB8 LINE L1 -349 5835 5725 1 1068 203 156 0 0 chr1 63397773 63397805 -133797627 + CT-rich Low_complexity Low_complexity 2 33 0 1 1068 952 270 100 12 chr1 63397814 63398065 -133797367 + B4 SINE B4 2 274 -18 1 1068 393 22 0 0 chr1 63398073 63398119 -133797313 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1068 736 278 108 9 chr1 63398345 63398731 -133796701 - Lx7 LINE L1 -366 5931 5537 1 1068 344 250 242 46 chr1 63398703 63398762 -133796670 + Lx7 LINE L1 7361 7417 -279 1 1068 216 0 0 0 chr1 63398762 63398786 -133796646 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1068 344 250 242 46 chr1 63398786 63398816 -133796616 + Lx7 LINE L1 7418 7465 -231 1 1068 752 69 0 25 chr1 63398816 63398935 -133796497 - L1_Mus4 LINE L1 0 6636 6521 1 1068 344 250 242 46 chr1 63398935 63399125 -133796307 + Lx7 LINE L1 7466 7696 0 1 1068 3477 192 40 53 chr1 63399139 63399948 -133795484 + RLTR40 LTR ERVK 20 817 0 1 1068 1292 281 66 18 chr1 63399976 63400549 -133794883 - L1M2 LINE L1 -2164 4678 4078 1 1068 417 20 0 0 chr1 63400597 63400647 -133794785 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1 1068 879 156 0 0 chr1 63400675 63400803 -133794629 - B2_Mm2 SINE B2 -66 129 2 1 1068 630 246 44 5 chr1 63400814 63401069 -133794363 - L1_Mur3 LINE L1 -2557 3323 3086 1 1068 651 26 0 0 chr1 63401084 63401161 -133794271 + (TCC)n Simple_repeat Simple_repeat 3 79 0 1 1068 933 192 117 5 chr1 63401190 63401378 -133794054 + B3 SINE B2 6 214 -2 1 1068 621 211 16 0 chr1 63401378 63401501 -133793931 - B1_Mur1 SINE Alu 0 149 25 1 1068 1079 135 0 13 chr1 63401530 63401680 -133793752 - B1_Mur4 SINE Alu -2 148 1 1 1068 2004 101 73 0 chr1 63401689 63401803 -133793629 - Lx LINE L1 0 6654 6536 1 1068 183 80 0 0 chr1 63401803 63401828 -133793604 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 1068 2004 101 73 0 chr1 63401828 63401999 -133793433 - Lx LINE L1 -119 6535 6349 1 1068 730 239 7 0 chr1 63402064 63402202 -133793230 + B1_Mur3 SINE Alu 3 141 -8 1 1068 201 39 0 0 chr1 63402228 63402254 -133793178 + (CAAAC)n Simple_repeat Simple_repeat 1 26 0 1 1068 719 349 74 11 chr1 63402254 63402784 -133792648 - L1M2 LINE L1 -3154 3691 3129 1 1068 423 68 0 0 chr1 63403206 63403265 -133792167 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1068 462 190 31 55 chr1 63403505 63403633 -133791799 + RSINE1 SINE B4 16 140 -25 1 1068 777 200 0 0 chr1 63403706 63403826 -133791606 - B3 SINE B2 -89 127 8 1 1068 292 325 69 30 chr1 63404796 63405157 -133790275 - L1_Mur3 LINE L1 -3455 2425 2072 1 1068 231 36 0 0 chr1 63405726 63405754 -133789678 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1068 725 191 53 8 chr1 63405754 63405886 -133789546 - B1_Mur1 SINE Alu -10 139 2 1 1068 273 235 73 109 chr1 63405789 63405899 -133789533 - MT2B LTR ERVL -344 257 152 1 1068 291 304 102 40 chr1 63405899 63406427 -133789005 - L1M2 LINE L1 -4324 2525 1959 1 1068 459 52 0 0 chr1 63406437 63406495 -133788937 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1068 483 0 29 15 chr1 63407209 63407277 -133788155 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 1 1068 707 224 14 63 chr1 63407277 63407420 -133788012 - B1_Mur1 SINE Alu -12 137 2 1 1068 354 275 42 57 chr1 63407970 63408043 -133787389 - L1MA8 LINE L1 -160 6140 6064 1 1068 243 0 0 0 chr1 63408043 63408070 -133787362 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 1068 354 275 42 57 chr1 63408070 63408189 -133787243 - L1MA8 LINE L1 -237 6063 5951 1 1068 297 0 0 0 chr1 63408483 63408516 -133786916 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1068 1202 255 109 34 chr1 63408839 63409334 -133786098 - L1MA8 LINE L1 -402 5889 5358 1 1068 439 238 164 16 chr1 63409765 63409893 -133785539 - B1F SINE Alu -2 147 1 1 1068 936 254 151 22 chr1 63409893 63410304 -133785128 - Charlie1a DNA MER1_type -30 1425 962 1 1068 225 184 60 20 chr1 63410349 63410399 -133785033 - MTE2b LTR MaLR 0 379 328 1 1068 1496 265 30 8 chr1 63410401 63410766 -133784666 - MTE-int LTR MaLR -1207 373 1 1 1068 189 0 0 0 chr1 63410801 63410822 -133784610 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1068 429 198 21 32 chr1 63410876 63410970 -133784462 - B4 SINE B4 -157 135 43 1 1068 478 210 50 0 chr1 63411010 63411110 -133784322 - L2a LINE L2 -18 3408 3304 1 1068 238 189 19 19 chr1 63411103 63411157 -133784275 + MIR SINE MIR 63 116 -92 1 1068 3625 24 0 0 chr1 63412086 63412504 -133782928 - L1_Mm LINE L1 -531 5352 4935 1 1068 326 15 0 4 chr1 63412504 63412546 -133782886 + L1_Mm LINE L1 5407 5476 -824 1 1068 342 359 52 74 chr1 63413813 63414042 -133781390 - L2b LINE L2 -2 3373 3150 1 1068 292 248 81 57 chr1 63414680 63414804 -133780628 - LTR16A LTR ERVL 0 451 325 1 1068 387 281 122 9 chr1 63414964 63415079 -133780353 - MER2 DNA MER2_type -3 342 215 1 1068 665 187 7 0 chr1 63415079 63415218 -133780214 + (TA)n Simple_repeat Simple_repeat 1 140 0 1 1068 372 333 8 60 chr1 63415221 63415355 -133780077 - ID_B1 SINE B4 -10 214 88 1 1068 505 278 88 104 chr1 63415340 63415589 -133779843 - MER2 DNA MER2_type -100 245 1 1 1068 1028 257 55 22 chr1 63416409 63416771 -133778661 - L1MB3 LINE L1 -3 6180 5807 1 1068 340 260 13 27 chr1 63416882 63416957 -133778475 - RLTR20A2 LTR ERVK 0 578 505 1 1068 530 15 15 0 chr1 63416957 63417024 -133778408 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1068 524 89 13 0 chr1 63417061 63417140 -133778292 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 1 1068 385 211 66 0 chr1 63417148 63417224 -133778208 - PB1D7 SINE Alu -8 112 32 1 1068 360 256 57 0 chr1 63417227 63417384 -133778048 - L1MB3 LINE L1 -692 5486 5321 1 1068 1283 202 165 34 chr1 63417386 63417624 -133777808 - ORR1D1 LTR MaLR -4 370 79 1 1068 3446 46 5 2 chr1 63417624 63418019 -133777413 - MTA_Mm LTR MaLR 0 396 1 1 1068 1283 202 165 34 chr1 63418019 63418107 -133777325 - ORR1D1 LTR MaLR -296 78 1 1 1068 297 314 94 7 chr1 63418146 63418284 -133777148 - L1MB3 LINE L1 -864 5282 5125 1 1068 534 103 0 0 chr1 63418284 63418362 -133777070 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1068 297 314 94 7 chr1 63418362 63418491 -133776941 - L1MB3 LINE L1 -1022 5124 4991 1 1068 288 0 0 0 chr1 63418491 63418523 -133776909 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1068 805 207 0 0 chr1 63418532 63418667 -133776765 - B1_Mur3 SINE Alu -7 142 8 1 1068 274 280 13 13 chr1 63418678 63418754 -133776678 + CT-rich Low_complexity Low_complexity 4 79 0 1 1068 313 314 33 30 chr1 63418772 63418885 -133776547 - FLAM_A SINE Alu -2 125 2 1 1068 225 349 0 15 chr1 63418825 63418892 -133776540 - B4A SINE B4 -146 146 81 1 1068 831 152 20 40 chr1 63419290 63419441 -133775991 - B1_Mus1 SINE Alu 0 148 1 1 1068 536 262 10 140 chr1 63420060 63420260 -133775172 - B4A SINE B4 -116 176 3 1 1068 236 310 54 54 chr1 63420725 63420817 -133774615 + MER73 LTR ERVL 378 469 -175 1 1068 530 271 149 26 chr1 63420810 63421120 -133774312 + MER54A LTR ERVL 552 899 -2 1 1068 306 0 0 0 chr1 63421577 63421611 -133773821 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1068 435 262 115 20 chr1 63421621 63421769 -133773663 - RSINE1 SINE B4 0 165 4 1 1068 630 71 0 0 chr1 63422290 63422374 -133773058 + (TATG)n Simple_repeat Simple_repeat 1 84 0 1 1068 1085 277 65 54 chr1 63423019 63423095 -133772337 - Lx7 LINE L1 -270 7426 7361 1 1068 207 0 0 0 chr1 63423095 63423118 -133772314 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1068 1085 277 65 54 chr1 63423118 63423488 -133771944 - Lx7 LINE L1 -336 7360 6975 1 1068 231 339 0 0 chr1 63423513 63423569 -133771863 - ID4 SINE ID -20 63 8 1 1068 203 125 25 0 chr1 63423600 63423640 -133771792 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 1068 423 0 0 0 chr1 63423691 63423738 -133771694 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1068 637 247 132 132 chr1 63424125 63424414 -133771018 + B4 SINE B4 4 292 0 1 1068 938 76 0 8 chr1 63424937 63425070 -133770362 + (TTCCC)n Simple_repeat Simple_repeat 5 136 0 1 1068 198 167 0 0 chr1 63426175 63426211 -133769221 + CT-rich Low_complexity Low_complexity 1 36 0 1 1068 1149 120 0 0 chr1 63426212 63426421 -133769011 + (TCC)n Simple_repeat Simple_repeat 1 209 0 1 1068 788 196 12 0 chr1 63426421 63426594 -133768838 + CT-rich Low_complexity Low_complexity 6 180 0 1 1068 702 167 17 0 chr1 63426614 63426734 -133768698 - B1_Mur4 SINE Alu -1 149 28 1 1068 323 193 18 0 chr1 63426979 63427036 -133768396 + PB1D10 SINE Alu 33 90 -27 1 1068 376 167 117 0 chr1 63427044 63427104 -133768328 + ID4 SINE ID 3 69 -14 1 1068 338 61 20 0 chr1 63427113 63427162 -133768270 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 1 1068 396 0 0 0 chr1 63428450 63428494 -133766938 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1068 1541 251 26 34 chr1 63428873 63429253 -133766179 + MTE2b LTR MaLR 1 377 -2 1 1068 22 0 0 0 chr1 63429538 63429560 -133765872 + AT_rich Low_complexity Low_complexity 1 22 0 1 1068 1228 88 0 0 chr1 63430495 63430642 -133764790 + B1_Mus2 SINE Alu 1 147 0 1 1068 1498 44 16 42 chr1 63430650 63430841 -133764591 + B2_Mm2 SINE B2 1 186 -9 1 1068 2758 228 191 35 chr1 63430846 63431712 -133763720 - RMER1A Other Other -25 1005 45 1 1068 787 329 53 14 chr1 63431879 63432160 -133763272 - B4 SINE B4 0 292 1 1 1068 915 141 7 7 chr1 63432411 63432554 -133762878 + B1_Mur4 SINE Alu 1 143 -7 1 1068 613 215 0 0 chr1 63432580 63432676 -133762756 + B3 SINE B2 1 96 -120 1 1068 453 169 56 0 chr1 63432676 63432765 -133762667 - RLTR24 LTR ERV1 0 529 436 1 1068 214 211 0 0 chr1 63432793 63432831 -133762601 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1068 830 197 0 0 chr1 63432831 63432968 -133762464 - B1_Mur2 SINE Alu -3 146 10 1 1068 197 330 43 54 chr1 63433570 63433663 -133761769 - L2b LINE L2 -5 3370 3279 1 1068 389 281 59 91 chr1 63433729 63433948 -133761484 + MLT1A LTR MaLR 2 213 -161 1 1068 1061 255 122 25 chr1 63434096 63434571 -133760861 - L1M4 LINE L1 -3131 3015 2495 1 1068 312 215 0 0 chr1 63434577 63434642 -133760790 - L1MA9 LINE L1 -6 6306 6242 1 1068 1497 255 74 24 chr1 63434654 63435357 -133760075 - L1M4c LINE L1 -509 6383 5651 1 1068 552 273 0 20 chr1 63435358 63435511 -133759921 + L1M3 LINE L1 5521 5670 -519 1 1068 1245 251 57 55 chr1 63435530 63435934 -133759498 + MTD LTR MaLR 1 405 -14 1 1068 868 240 47 23 chr1 63435942 63436198 -133759234 + L1MA4A LINE L1 5679 5940 -363 1 1068 234 281 69 23 chr1 63436404 63436535 -133758897 - L1M4c LINE L1 -1098 5643 5507 1 1068 341 289 133 0 chr1 63436549 63436698 -133758734 + MTE2a LTR MaLR 2 174 -205 1 1068 699 188 235 6 chr1 63436704 63436870 -133758562 + B3 SINE B2 2 205 -11 1 1068 266 178 0 0 chr1 63436971 63437016 -133758416 + MLT2D LTR ERVL 514 558 -2 1 1068 553 270 47 11 chr1 63437018 63437209 -133758223 - L1M4c LINE L1 -1248 5496 5299 1 1068 216 111 0 0 chr1 63437232 63437268 -133758164 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 1 1068 381 188 14 0 chr1 63437282 63437351 -133758081 - ID4 SINE ID -10 73 4 1 1068 262 321 0 0 chr1 63437354 63437460 -133757972 - L1M4c LINE L1 -1440 5301 5196 1 1068 988 258 138 28 chr1 63437456 63437927 -133757505 - L1M4c LINE L1 -4210 2539 2017 1 1068 280 288 0 52 chr1 63437968 63438045 -133757387 - B4A SINE B4 -1 291 219 1 1068 403 318 0 67 chr1 63438076 63438211 -133757221 - RSINE1 SINE B4 -1 164 39 1 1068 259 308 105 32 chr1 63438191 63438315 -133757117 - B1_Mur2 SINE Alu -16 133 1 1 1068 603 74 0 0 chr1 63438355 63438436 -133756996 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 1 1068 411 21 0 0 chr1 63438468 63438516 -133756916 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1 133 1337 227 28 81 chr1 63438516 63438875 -133756557 - Lx6 LINE L1 -32 7428 7089 1 1069 336 271 10 77 chr1 63438877 63438981 -133756451 - B4A SINE B4 -195 97 1 1 1069 273 287 9 47 chr1 63438989 63439095 -133756337 - L1M4c LINE L1 -4734 2015 1914 1 1069 577 122 43 23 chr1 63439179 63439484 -133755948 + (TG)n Simple_repeat Simple_repeat 1 311 0 1 1069 236 243 164 79 chr1 63439484 63439636 -133755796 - RSINE1 SINE B4 0 165 1 1 1069 357 349 23 0 chr1 63439682 63439811 -133755621 - L1M4c LINE L1 -4861 1888 1757 1 1069 267 228 25 0 chr1 63439918 63439997 -133755435 - L1M4c LINE L1 -4989 1618 1538 1 1069 363 322 42 7 chr1 63440065 63440209 -133755223 - L1M4c LINE L1 -5298 1451 1303 1 1069 358 293 43 0 chr1 63440252 63440368 -133755064 - B1F2 SINE Alu -27 122 2 1 1069 744 284 110 96 chr1 63440370 63440691 -133754741 - L1M4c LINE L1 -5448 1301 944 1 1069 495 0 0 0 chr1 63440691 63440746 -133754686 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1069 3518 70 31 4 chr1 63440748 63441204 -133754228 - L1_Mus3 LINE L1 -6 6632 6165 1 1069 744 284 110 96 chr1 63441204 63441443 -133753989 - L1M4c LINE L1 -5806 943 730 1 1069 23 0 0 0 chr1 63442968 63442991 -133752441 + AT_rich Low_complexity Low_complexity 1 23 0 1 1069 492 263 30 0 chr1 63443143 63443242 -133752190 + RSINE1 SINE B4 4 105 -60 1 1069 513 0 0 0 chr1 63443473 63443530 -133751902 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1069 3622 287 73 12 chr1 63443532 63444764 -133750668 - Lx8 LINE L1 -147 7326 6020 1 1069 748 245 70 23 chr1 63444808 63445067 -133750365 - L1_Mur3 LINE L1 -2915 2965 2695 1 1069 935 17 0 0 chr1 63445071 63445186 -133750246 - MTA_Mm LTR MaLR 0 396 282 1 1069 450 49 0 16 chr1 63445180 63445242 -133750190 - MTA_Mm LTR MaLR -335 61 1 1 1069 9628 24 2 0 chr1 63445242 63446338 -133749094 - MTA_Mm-int LTR MaLR 0 1098 1 1 1069 3640 13 0 0 chr1 63446338 63446734 -133748698 - MTA_Mm LTR MaLR 0 396 1 1 1069 804 244 25 16 chr1 63446738 63446980 -133748452 - L1_Mur3 LINE L1 -3189 2691 2448 1 1069 283 236 42 0 chr1 63447004 63447076 -133748356 - B1F SINE Alu -34 115 41 1 1069 303 122 0 0 chr1 63447173 63447222 -133748210 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1069 438 20 0 0 chr1 63447222 63447273 -133748159 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1069 298 151 27 0 chr1 63447429 63447502 -133747930 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1069 351 256 133 23 chr1 63447779 63447907 -133747525 - B1_Mur2 SINE Alu -7 142 1 1 1069 631 274 13 89 chr1 63447907 63448125 -133747307 - LTR52 LTR ERVL -207 214 13 1 1069 1431 316 31 39 chr1 63448288 63448832 -133746600 + MER68 LTR ERVL 22 561 -2 1 1069 228 264 27 14 chr1 63448834 63448907 -133746525 + L1MC4 LINE L1 7516 7589 -453 1 1069 234 0 0 0 chr1 63449048 63449074 -133746358 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1069 412 326 34 17 chr1 63451173 63451348 -133744084 + MIR SINE MIR 35 212 -50 1 1069 2409 114 16 5 chr1 63451349 63451729 -133743703 + ORR1B1 LTR MaLR 3 386 -8 1 1069 537 149 215 0 chr1 63452032 63452139 -133743293 - B3 SINE B2 -86 130 1 1 1069 279 282 98 18 chr1 63452416 63452528 -133742904 - L1M5 LINE L1 -772 5468 5348 1 1069 354 23 0 0 chr1 63452709 63452752 -133742680 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 1 1069 1933 166 91 3 chr1 63453653 63454015 -133741417 - ORR1B1 LTR MaLR 0 394 1 1 1069 1328 240 16 60 chr1 63454927 63455291 -133740141 - MTEa LTR MaLR -6 373 26 1 1069 570 269 29 137 chr1 63455296 63455529 -133739903 + B4 SINE B4 5 204 -88 1 1069 857 25 33 0 chr1 63455529 63455649 -133739783 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 1069 570 269 29 137 chr1 63455649 63455729 -133739703 + B4 SINE B4 205 283 -9 1 1069 197 239 0 0 chr1 63455826 63455872 -133739560 - L2a LINE L2 -43 3383 3338 1 1069 891 162 7 0 chr1 63456595 63456737 -133738695 + B1_Mur1 SINE Alu 1 143 -6 1 1069 344 214 0 73 chr1 63457365 63457461 -133737971 - MLT1A0 LTR MaLR 0 365 277 1 1069 268 255 152 10 chr1 63457653 63457752 -133737680 - MLT1A0 LTR MaLR -293 115 3 1 1069 483 208 0 0 chr1 63457781 63457911 -133737521 + CT-rich Low_complexity Low_complexity 3 132 0 1 1069 214 274 192 40 chr1 63457914 63458013 -133737419 - PB1D9 SINE Alu -6 114 1 1 1069 914 159 7 0 chr1 63458050 63458188 -133737244 + B1_Mus1 SINE Alu 1 139 -9 1 1069 7871 66 2 1 chr1 63459238 63460291 -133735141 - L1_Mus2 LINE L1 0 6566 5513 1 1069 365 320 78 102 chr1 63460637 63460804 -133734628 + B4 SINE B4 6 168 -124 1 1069 222 148 0 0 chr1 63460830 63460884 -133734548 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1069 1313 228 127 14 chr1 63461010 63461354 -133734078 + MTD LTR MaLR 19 375 -44 1 1069 652 228 22 0 chr1 63462223 63462359 -133733073 - B1F2 SINE Alu -8 141 3 1 1069 310 269 11 21 chr1 63462889 63462984 -133732448 - MER34A LTR ERV1 -5 566 473 1 1069 250 238 0 16 chr1 63463292 63463356 -133732076 - MER34A LTR ERV1 -469 102 40 1 1069 660 266 82 4 chr1 63464093 63464203 -133731229 + L1MA9 LINE L1 6049 6160 -152 1 1069 288 0 0 0 chr1 63464203 63464235 -133731197 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1069 660 266 82 4 chr1 63464235 63464369 -133731063 + L1MA9 LINE L1 6161 6311 -1 1 1069 189 250 36 143 chr1 63465189 63465273 -133730159 - L2c LINE L2 -12 3375 3301 1 1069 496 186 18 0 chr1 63466093 63466206 -133729226 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 1069 285 259 23 14 chr1 63466212 63466326 -133729106 - MLT2B5 LTR ERVL -176 379 253 1 1069 203 271 68 0 chr1 63467883 63467942 -133727490 + MIR SINE MIR 79 141 -67 1 1069 204 200 0 0 chr1 63468134 63468179 -133727253 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1069 369 244 0 0 chr1 63468179 63468261 -133727171 - RMER12 LTR ERVK -471 851 770 1 1069 189 0 0 0 chr1 63468277 63468298 -133727134 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1069 470 323 0 8 chr1 63468317 63468445 -133726987 - B1F SINE Alu -20 129 3 1 1069 231 378 74 0 chr1 63468473 63468608 -133726824 - MLT1J2 LTR MaLR -213 235 91 1 1069 369 0 0 0 chr1 63470080 63470121 -133725311 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1069 604 177 4 1 chr1 63470277 63470392 -133725040 + B1_Mus1 SINE Alu 2 118 -2 1 1069 236 53 26 0 chr1 63470418 63470456 -133724976 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1069 711 229 63 68 chr1 63470680 63470886 -133724546 + B3 SINE B2 2 206 -10 1 1069 255 204 48 10 chr1 63471032 63471136 -133724296 + (TA)n Simple_repeat Simple_repeat 1 108 0 1 1069 183 42 0 0 chr1 63471149 63471173 -133724259 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1069 192 152 0 0 chr1 63471236 63471269 -133724163 + T-rich Low_complexity Low_complexity 1 33 0 1 1069 401 275 147 20 chr1 63471733 63471937 -133723495 + Lx9 LINE L1 7253 7482 -162 1 1069 484 255 93 7 chr1 63472255 63472405 -133723027 + ERVL-int LTR ERVL 5595 5757 0 1 1069 950 273 151 25 chr1 63472405 63472837 -133722595 + MLT2B4 LTR ERVL 1 486 -70 1 1069 241 268 0 0 chr1 63472902 63472973 -133722459 + PB1D10 SINE Alu 45 115 -2 1 1069 186 43 0 0 chr1 63472976 63472999 -133722433 + (CAAAC)n Simple_repeat Simple_repeat 5 27 0 1 1069 832 326 97 9 chr1 63473191 63473615 -133721817 - Lx8 LINE L1 0 7473 7013 1 1069 579 232 116 42 chr1 63473629 63473818 -133721614 - B4 SINE B4 -88 204 2 1 1069 1482 60 5 0 chr1 63474017 63474201 -133721231 + B2_Mm1a SINE B2 2 186 -7 1 1069 180 360 11 22 chr1 63474237 63474328 -133721104 + MIR3 SINE MIR 94 183 -25 1 1069 1151 75 0 7 chr1 63475299 63475446 -133719986 - B1_Mus1 SINE Alu -2 146 1 1 1069 300 271 12 0 chr1 63475621 63475706 -133719726 - Lx9 LINE L1 -153 7491 7406 1 1069 955 265 19 5 chr1 63475720 63475936 -133719496 - Lx9 LINE L1 -991 6653 6435 1 1069 2015 128 73 39 chr1 63475940 63476238 -133719194 + ORR1B1 LTR MaLR 1 318 -76 1 1069 3150 70 5 0 chr1 63476238 63476636 -133718796 - MTB LTR MaLR 0 400 1 1 1069 2015 128 73 39 chr1 63476636 63476718 -133718714 + ORR1B1 LTR MaLR 319 394 0 1 1069 301 253 129 109 chr1 63476722 63477024 -133718408 - Lx9 LINE L1 -1213 6431 6124 1 1069 826 234 9 32 chr1 63479218 63479439 -133715993 + B3 SINE B2 1 216 0 1 1069 539 287 82 11 chr1 63479602 63479806 -133715626 - B3A SINE B2 -8 208 3 1 1069 216 0 0 0 chr1 63479974 63479998 -133715434 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1069 403 275 9 35 chr1 63479998 63480111 -133715321 - ID_B1 SINE B4 -13 211 102 1 1069 201 74 0 0 chr1 63480288 63480315 -133715117 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1069 483 100 0 0 chr1 63480447 63480517 -133714915 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1069 370 315 85 51 chr1 63480598 63480929 -133714503 - CR1_Mam LINE CR1 -520 1684 1343 1 1069 493 270 24 42 chr1 63481481 63481647 -133713785 + RSINE1 SINE B4 3 165 0 1 1069 21 0 0 0 chr1 63481663 63481684 -133713748 + AT_rich Low_complexity Low_complexity 1 21 0 1 1069 420 130 0 0 chr1 63481872 63481941 -133713491 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1 1069 242 271 122 10 chr1 63482036 63482143 -133713289 + MIRb SINE MIR 43 168 -100 1 1069 315 0 0 0 chr1 63482392 63482427 -133713005 + (CATA)n Simple_repeat Simple_repeat 1 35 0 1 1069 455 243 9 28 chr1 63482536 63482642 -133712790 + PB1D10 SINE Alu 1 104 -13 1 1069 230 296 26 12 chr1 63483015 63483115 -133712317 - MIRb SINE MIR -108 168 59 1 1069 426 314 47 24 chr1 63483132 63483386 -133712046 + L1MA9 LINE L1 5961 6220 -92 1 1069 593 128 0 11 chr1 63483710 63483805 -133711627 - B1_Mus2 SINE Alu -2 145 52 1 1069 252 59 0 0 chr1 63483963 63483997 -133711435 + (TATG)n Simple_repeat Simple_repeat 1 34 0 1 1069 189 0 0 0 chr1 63484454 63484475 -133710957 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1069 22 0 0 0 chr1 63484642 63484664 -133710768 + GC_rich Low_complexity Low_complexity 1 22 0 1 1069 222 239 14 14 chr1 63485447 63485519 -133709913 + CT-rich Low_complexity Low_complexity 1 72 0 1 1069 4525 134 56 9 chr1 63485584 63486350 -133709082 - Lx3B LINE L1 -25 6948 6147 1 1069 46 0 0 0 chr1 63486547 63486593 -133708839 + AT_rich Low_complexity Low_complexity 1 46 0 1 1069 429 49 0 16 chr1 63486598 63486660 -133708772 - L1_Mus2 LINE L1 -1 6565 6505 1 1069 537 212 103 26 chr1 63486661 63486816 -133708616 - ID_B1 SINE B4 -7 217 51 1 1069 522 30 29 48 chr1 63487031 63487135 -133708297 + (TATAA)n Simple_repeat Simple_repeat 2 103 0 1 1069 447 209 183 0 chr1 63487239 63487354 -133708078 - B1_Mur1 SINE Alu -1 148 13 1 1069 267 215 0 0 chr1 63487371 63487436 -133707996 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1069 310 155 17 33 chr1 63487443 63487503 -133707929 + HAL1-3A_ME LINE L1 1976 2034 -824 1 1069 367 303 35 35 chr1 63487538 63487651 -133707781 - RSINE1 SINE B4 -42 123 11 1 1069 5433 150 40 13 chr1 63488567 63489568 -133705864 - RLTR25B LTR ERVK 0 1028 1 1 1069 726 180 6 17 chr1 63489634 63489719 -133705713 + polypyrimidine Low_complexity Low_complexity 89 174 0 1 1069 1159 76 0 0 chr1 63489719 63489864 -133705568 - B1_Mus2 SINE Alu -1 146 2 1 1069 1046 140 6 0 chr1 63489864 63490043 -133705389 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1069 726 180 6 17 chr1 63490043 63490131 -133705301 + polypyrimidine Low_complexity Low_complexity 3 88 0 1 1069 1481 135 18 40 chr1 63490371 63490649 -133704783 - Lx LINE L1 0 6654 6383 1 1069 351 0 0 0 chr1 63490715 63490754 -133704678 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1069 251 123 35 0 chr1 63490771 63490828 -133704604 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 1069 36 40 0 0 chr1 63492851 63492901 -133702531 + GC_rich Low_complexity Low_complexity 1 50 0 1 1069 214 156 0 0 chr1 63493699 63493731 -133701701 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1 1069 428 192 10 0 chr1 63493731 63493835 -133701597 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1069 1669 233 13 15 chr1 63497182 63497582 -133697850 + MTD LTR MaLR 18 405 -14 1 1069 1826 271 141 44 chr1 63497903 63498674 -133696758 + MER21B LTR ERV1 4 849 -14 1 1069 309 339 46 44 chr1 63500606 63500905 -133694527 + MLT1A LTR MaLR 62 400 -8 1 1069 210 71 0 0 chr1 63502780 63502808 -133692624 + (CAAAG)n Simple_repeat Simple_repeat 1 28 0 2 1069 251 297 0 0 chr1 63502866 63502930 -133692502 + ID4 SINE ID 4 67 -16 3 1069 25 31 0 0 chr1 63503504 63503536 -133691896 + AT_rich Low_complexity Low_complexity 1 32 0 4 1069 201 39 0 0 chr1 63503562 63503588 -133691844 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1069 400 241 121 50 chr1 63503590 63503730 -133691702 - B3A SINE B2 -47 151 2 6 1069 227 156 64 13 chr1 63503842 63503920 -133691512 + CT-rich Low_complexity Low_complexity 3 84 0 7 1069 386 191 0 31 chr1 63503916 63503972 -133691460 + T-rich Low_complexity Low_complexity 41 94 0 8 1069 1128 44 44 0 chr1 63503972 63504109 -133691323 - B1_Mus2 SINE Alu -4 143 1 9 1069 386 191 0 31 chr1 63504109 63504149 -133691283 + T-rich Low_complexity Low_complexity 1 40 0 1 1069 189 0 0 0 chr1 63504150 63504171 -133691261 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1069 596 254 22 0 chr1 63504174 63504312 -133691120 - B1F1 SINE Alu -7 142 2 1 1069 517 243 35 7 chr1 63504755 63504896 -133690536 + ORR1E LTR MaLR 1 145 -214 1 1069 226 300 25 12 chr1 63505410 63505491 -133689941 - ID4 SINE ID -1 82 1 1 1069 242 347 142 28 chr1 63506566 63506925 -133688507 + L2 LINE L2 2410 2809 -610 1 1069 252 0 0 0 chr1 63506950 63506978 -133688454 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1069 24 0 0 0 chr1 63507229 63507253 -133688179 + AT_rich Low_complexity Low_complexity 1 24 0 1 1069 439 270 102 15 chr1 63507733 63508087 -133687345 - L1M3 LINE L1 -600 5580 5184 1 1069 355 282 33 30 chr1 63508159 63508296 -133687136 - B1F1 SINE Alu -2 145 7 1 1069 374 260 34 150 chr1 63508307 63508574 -133686858 - L1M3 LINE L1 -969 5171 4936 1 1069 831 112 46 0 chr1 63508574 63508726 -133686706 + CT-rich Low_complexity Low_complexity 1 159 0 2 1069 465 261 105 16 chr1 63508726 63508917 -133686515 - L1M3 LINE L1 -1194 4946 4739 1 1069 269 254 47 16 chr1 63508921 63508985 -133686447 - tRNA-Ala-GCY_ tRNA tRNA -6 69 4 2 1069 262 290 0 16 chr1 63508931 63508994 -133686438 - ID4_ SINE ID -21 62 1 2 1069 1140 250 118 74 chr1 63508996 63509673 -133685759 - L1M3 LINE L1 -1446 4694 3988 1 1069 857 271 81 11 chr1 63510155 63510416 -133685016 + B4A SINE B4 6 284 -8 2 1069 259 356 48 0 chr1 63511380 63511526 -133683906 - L2 LINE L2 -534 2885 2733 2 1069 392 278 57 40 chr1 63511892 63512068 -133683364 + MLT1D LTR MaLR 323 501 -4 2 1069 193 218 36 0 chr1 63512221 63512276 -133683156 - L2 LINE L2 -1051 2368 2312 2 1069 23 33 0 0 chr1 63513423 63513453 -133681979 + AT_rich Low_complexity Low_complexity 1 30 0 2 1069 366 132 0 0 chr1 63513701 63513777 -133681655 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1069 827 199 85 15 chr1 63514528 63514727 -133680705 - B3 SINE B2 -1 215 3 2 1069 881 220 96 16 chr1 63514752 63515001 -133680431 - Lx9 LINE L1 -5 7639 7371 2 1069 534 305 142 40 chr1 63515268 63515798 -133679634 + L2 LINE L2 2492 3075 -344 3 1069 186 240 0 0 chr1 63516779 63516829 -133678603 + CT-rich Low_complexity Low_complexity 3 52 0 3 1069 267 304 0 0 chr1 63516831 63516900 -133678532 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 3 1069 182 280 33 59 chr1 63518908 63519060 -133676372 - MIRb SINE MIR -17 251 104 3 1069 363 264 66 47 chr1 63519294 63519505 -133675927 - B3 SINE B2 -1 215 1 3 1069 264 200 14 14 chr1 63519862 63519933 -133675499 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1069 180 152 0 0 chr1 63520777 63520810 -133674622 + (TATG)n Simple_repeat Simple_repeat 3 35 0 3 1069 256 272 24 24 chr1 63520839 63520910 -133674522 + ID_B1 SINE B4 142 214 -10 3 1069 500 226 35 0 chr1 63520910 63521025 -133674407 + PB1D9 SINE Alu 1 119 -1 3 1069 256 272 24 24 chr1 63521025 63521036 -133674396 + ID_B1 SINE B4 215 224 0 3 1069 550 254 0 22 chr1 63521613 63521794 -133673638 - HAL1-2a_MD LINE L1 -507 2517 2341 3 1069 658 276 54 74 chr1 63524584 63524936 -133670496 - Lx8 LINE L1 -9 7464 7120 4 1069 1179 82 0 0 chr1 63526416 63526563 -133668869 + B1_Mus1 SINE Alu 2 148 0 4 1069 207 0 0 0 chr1 63526572 63526595 -133668837 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 1069 3484 145 113 3 chr1 63528535 63528865 -133666567 + RMER6D LTR ERVK 1 360 -360 4 1069 219 36 0 0 chr1 63528865 63528893 -133666539 + (GTGTG)n Simple_repeat Simple_repeat 1 28 0 4 1069 3484 145 113 3 chr1 63528893 63529207 -133666225 + RMER6D LTR ERVK 361 715 -5 4 1069 441 241 79 18 chr1 63529527 63529641 -133665791 + B1F2 SINE Alu 14 134 -15 4 1069 738 181 216 22 chr1 63530682 63530794 -133664638 + Lx9 LINE L1 7368 7494 -150 4 1069 432 37 0 0 chr1 63530794 63530848 -133664584 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1069 738 181 216 22 chr1 63530848 63530967 -133664465 + Lx9 LINE L1 7495 7643 -1 4 1069 509 321 83 43 chr1 63532566 63532914 -133662518 + MLT1B LTR MaLR 1 362 -28 4 1069 300 275 13 86 chr1 63533630 63533648 -133661784 + ID_B1 SINE B4 78 217 -7 4 1069 568 189 23 45 chr1 63533648 63533781 -133661651 + B1_Mur1 SINE Alu 13 142 -7 5 1069 762 175 11 73 chr1 63534308 63534499 -133660933 - B2_Mm2 SINE B2 -16 179 1 5 1069 196 133 0 0 chr1 63535094 63535124 -133660308 - L2a LINE L2 -17 3409 3380 5 1069 2563 142 18 7 chr1 63535250 63535698 -133659734 - RMER4A LTR ERVK -8 458 6 5 1069 704 209 233 0 chr1 63535860 63536032 -133659400 + B3 SINE B2 3 214 -2 5 1069 733 47 19 0 chr1 63536035 63536141 -133659291 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1069 472 307 48 109 chr1 63536262 63536573 -133658859 - MLT1A0 LTR MaLR -55 310 19 5 1069 22 0 0 0 chr1 63536885 63536907 -133658525 + AT_rich Low_complexity Low_complexity 1 22 0 5 1069 292 302 63 0 chr1 63537317 63537443 -133657989 - L1MA9 LINE L1 -3 6309 6176 5 1069 188 182 23 0 chr1 63537443 63537487 -133657945 + C-rich Low_complexity Low_complexity 3 47 0 5 1069 216 200 0 0 chr1 63538879 63538924 -133656508 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1069 699 75 0 0 chr1 63540960 63541054 -133654378 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 6 1069 819 186 46 68 chr1 63541339 63541558 -133653874 - B3 SINE B2 -1 215 2 6 1069 476 244 168 58 chr1 63541891 63542082 -133653350 + B3 SINE B2 5 216 0 6 1069 435 83 0 0 chr1 63542357 63542417 -133653015 + (TCCCC)n Simple_repeat Simple_repeat 4 63 0 6 1069 317 278 31 16 chr1 63542431 63542559 -133652873 + CT-rich Low_complexity Low_complexity 4 133 0 6 1069 245 269 30 61 chr1 63542701 63542800 -133652632 + MTEb LTR MaLR 279 374 -5 6 1069 541 310 15 56 chr1 63543278 63543476 -133651956 + B4A SINE B4 103 292 0 6 1069 195 198 12 47 chr1 63543476 63543561 -133651871 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 6 1069 299 312 42 14 chr1 63543740 63543883 -133651549 - MIR SINE MIR -13 249 103 6 1069 23 0 0 0 chr1 63544059 63544082 -133651350 + AT_rich Low_complexity Low_complexity 1 23 0 7 1069 2447 45 52 0 chr1 63544091 63544399 -133651033 + L1Md_A LINE L1 6259 6582 0 7 1069 3515 18 10 0 chr1 63544756 63545148 -133650284 - MTA_Mm LTR MaLR 0 396 1 7 1069 498 46 0 0 chr1 63546996 63547061 -133648371 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1069 279 272 76 0 chr1 63547066 63547158 -133648274 - Lx7 LINE L1 -361 7335 7237 7 1069 916 209 27 54 chr1 63547332 63547554 -133647878 - B3 SINE B2 0 216 1 7 1069 1191 49 0 7 chr1 63547567 63547712 -133647720 - B1_Mus1 SINE Alu 0 148 5 7 1069 231 262 0 0 chr1 63547785 63547865 -133647567 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1069 302 0 0 26 chr1 63548022 63548061 -133647371 + (TTA)n Simple_repeat Simple_repeat 2 39 0 7 1069 389 295 124 22 chr1 63548862 63549136 -133646296 + L1MA6 LINE L1 5997 6298 -2 7 1069 1026 78 211 0 chr1 63549691 63549871 -133645561 - URR1A DNA MER1_type 0 226 9 8 1069 1160 196 10 0 chr1 63550077 63550281 -133645151 - B3 SINE B2 -9 207 2 8 1069 761 279 39 0 chr1 63550856 63551064 -133644368 + ID_B1 SINE B4 7 222 -2 8 1069 228 329 24 35 chr1 63551129 63551214 -133644218 - L1ME3B LINE L1 -111 6129 6046 8 1069 993 230 5 5 chr1 63551328 63551533 -133643899 + B3 SINE B2 12 216 0 8 1069 215 61 30 0 chr1 63552031 63552064 -133643368 + (TTATA)n Simple_repeat Simple_repeat 4 37 0 8 1069 719 185 0 15 chr1 63552096 63552228 -133643204 - B3 SINE B2 -86 130 1 8 1069 311 250 167 18 chr1 63553596 63553710 -133641722 - MTEb LTR MaLR 0 379 249 8 1069 962 269 11 15 chr1 63554878 63555139 -133640293 + B4A SINE B4 1 260 -32 8 1069 774 109 0 0 chr1 63555149 63555268 -133640164 + (TCCC)n Simple_repeat Simple_repeat 2 120 0 8 1069 288 141 183 0 chr1 63555926 63555997 -133639435 + Lx8 LINE L1 7387 7470 -3 9 1069 579 220 8 0 chr1 63556228 63556346 -133639086 + PB1D9 SINE Alu 2 120 0 9 1069 220 259 0 0 chr1 63556595 63556649 -133638783 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1069 458 303 6 6 chr1 63556661 63556840 -133638592 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1069 1346 154 237 4 chr1 63557436 63557710 -133637722 + ORR1A0 LTR MaLR 1 338 -8 9 1069 228 67 0 0 chr1 63558359 63558389 -133637043 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 1069 571 231 208 85 chr1 63559498 63559758 -133635674 + B4 SINE B4 1 292 0 9 1069 246 220 0 0 chr1 63559760 63559819 -133635613 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 1069 939 234 146 26 chr1 63560035 63560354 -133635078 - ORR1D1 LTR MaLR 0 374 23 9 1069 225 278 56 0 chr1 63560481 63560553 -133634879 - MIR3 SINE MIR -18 190 115 9 1069 501 262 60 7 chr1 63561380 63561530 -133633902 - RSINE1 SINE B4 -4 161 4 9 1069 748 255 129 9 chr1 63561530 63561763 -133633669 + MER58B DNA MER1_type 80 340 -1 1 1069 294 50 0 0 chr1 63561818 63561858 -133633574 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1069 378 324 47 9 chr1 63562835 63562857 -133632575 - PB1D10 SINE Alu -7 110 84 1 1069 2073 151 22 68 chr1 63562857 63563270 -133632162 - ORR1B1 LTR MaLR 0 394 1 1 1069 380 301 36 0 chr1 63563270 63563353 -133632079 - B1F1 SINE Alu -63 86 1 1 1069 271 386 34 0 chr1 63563274 63563362 -133632070 - B4 SINE B4 -125 167 77 1 1069 354 214 14 0 chr1 63563386 63563456 -133631976 - ID4 SINE ID -11 72 2 1 1069 260 314 37 19 chr1 63563462 63563569 -133631863 - MIR SINE MIR -73 189 81 1 1069 241 281 18 0 chr1 63563661 63563718 -133631714 + polypurine Low_complexity Low_complexity 1 58 0 1 1069 1107 90 6 22 chr1 63563718 63563899 -133631533 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1069 953 158 6 0 chr1 63563899 63564076 -133631356 + GA-rich Low_complexity Low_complexity 1 178 0 1 1069 189 0 0 0 chr1 63564769 63564790 -133630642 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1069 23 33 0 0 chr1 63565039 63565069 -133630363 + AT_rich Low_complexity Low_complexity 1 30 0 1 1069 33 0 0 0 chr1 63565218 63565251 -133630181 + AT_rich Low_complexity Low_complexity 1 33 0 1 1069 265 103 34 17 chr1 63565901 63565960 -133629472 + A-rich Low_complexity Low_complexity 6 65 0 1 1069 951 227 84 14 chr1 63566158 63566444 -133628988 - L1MB8 LINE L1 -2 6176 5871 1 1069 283 138 52 0 chr1 63566434 63566492 -133628940 - L1MA9 LINE L1 0 6312 6252 1 1069 1010 273 200 8 chr1 63566507 63567239 -133628193 - L1MA9 LINE L1 -32 6280 5408 1 1069 903 308 22 22 chr1 63567287 63567556 -133627876 + B4A SINE B4 9 277 -15 1 1069 1368 67 0 0 chr1 63567599 63567779 -133627653 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1069 363 157 0 0 chr1 63567783 63567853 -133627579 + CT-rich Low_complexity Low_complexity 2 71 0 1 1069 324 0 0 0 chr1 63567853 63567889 -133627543 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1069 466 67 27 0 chr1 63567896 63567971 -133627461 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1069 647 289 26 5 chr1 63568272 63568463 -133626969 - MER2 DNA MER2_type -1 344 150 1 1069 235 315 0 0 chr1 63568694 63568767 -133626665 + T-rich Low_complexity Low_complexity 1 73 0 1 1069 1879 155 13 84 chr1 63568885 63569266 -133626166 - ORR1B1 LTR MaLR 0 394 41 1 1070 355 159 63 0 chr1 63570564 63570627 -133624805 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 1 1070 324 0 0 0 chr1 63570627 63570663 -133624769 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1070 441 0 0 0 chr1 63570663 63570711 -133624721 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1070 546 16 0 0 chr1 63570932 63570995 -133624437 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1070 1155 68 7 0 chr1 63573115 63573261 -133622171 + B1_Mus1 SINE Alu 2 148 0 1 1070 206 0 69 0 chr1 63573684 63573713 -133621719 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1070 24 53 0 0 chr1 63573763 63573801 -133621631 + AT_rich Low_complexity Low_complexity 1 38 0 1 1070 352 248 105 30 chr1 63573970 63574103 -133621329 - Lx7 LINE L1 -366 7330 7188 1 1070 3544 215 44 15 chr1 63574168 63574946 -133620486 - Lx6 LINE L1 -177 7283 6484 1 1070 295 298 39 0 chr1 63575680 63575784 -133619648 - MTEb LTR MaLR 0 379 272 1 1070 249 108 0 0 chr1 63577856 63577893 -133617539 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1070 646 256 38 52 chr1 63577914 63578124 -133617308 - B3 SINE B2 -8 208 2 1 1070 236 185 55 6 chr1 63578189 63578352 -133617080 + (TA)n Simple_repeat Simple_repeat 1 171 0 1 1070 192 77 0 0 chr1 63579122 63579148 -133616284 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1 1070 400 255 133 0 chr1 63579319 63579417 -133616015 + PB1 SINE Alu 5 115 -12 1 1070 245 29 29 0 chr1 63579417 63579451 -133615981 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1070 249 355 26 0 chr1 63579480 63579556 -133615876 + ID4_ SINE ID 3 80 -3 1 1070 1451 248 58 46 chr1 63579794 63580208 -133615224 + MTD LTR MaLR 1 419 0 1 1070 356 260 178 30 chr1 63582057 63582192 -133613240 + RSINE1 SINE B4 3 157 -8 1 1070 1391 205 71 50 chr1 63583579 63583943 -133611489 - ORR1D1 LTR MaLR 0 374 3 1 1070 189 171 0 0 chr1 63585514 63585549 -133609883 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1 1070 231 36 0 0 chr1 63585607 63585635 -133609797 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1070 346 279 115 67 chr1 63585955 63586120 -133609312 - B4A SINE B4 -118 174 2 1 1070 229 299 78 0 chr1 63587646 63587723 -133607709 - ID2 SINE ID 0 83 1 1 1070 513 0 0 0 chr1 63587842 63587899 -133607533 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1070 234 207 11 99 chr1 63588174 63588265 -133607167 + MLT1A LTR MaLR 31 113 -261 1 1070 2101 51 0 0 chr1 63588364 63588620 -133606812 + L1Md_T LINE L1 6327 6582 0 1 1070 234 0 0 0 chr1 63588768 63588794 -133606638 + (TCC)n Simple_repeat Simple_repeat 2 27 0 1 1070 297 237 126 63 chr1 63588944 63589058 -133606374 - AluG_3 SINE Alu -87 224 9 1 1070 432 230 0 0 chr1 63590032 63590132 -133605300 - L1MA5 LINE L1 -23 6277 6178 1 1070 252 332 141 89 chr1 63592294 63592641 -133602791 - MLT1J LTR MaLR -103 409 45 1 1070 21 0 0 0 chr1 63593375 63593396 -133602036 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 2679 57 3 3 chr1 63593680 63594031 -133601401 - L1Md_F2 LINE L1 -2 6580 6230 1 1070 21 0 0 0 chr1 63598288 63598309 -133597123 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 633 296 43 58 chr1 63601402 63601610 -133593822 + B3 SINE B2 12 216 0 1 1070 506 114 11 0 chr1 63602940 63603028 -133592404 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1070 237 274 145 78 chr1 63603618 63603681 -133591751 - RMER21A LTR ERV1 -169 778 705 1 1070 1186 48 0 7 chr1 63603681 63603828 -133591604 - B1_Mus1 SINE Alu 0 148 3 1 1070 237 274 145 78 chr1 63603828 63603930 -133591502 - RMER21A LTR ERV1 -243 704 602 1 1070 421 198 9 9 chr1 63604669 63604781 -133590651 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1070 1111 239 59 18 chr1 63606033 63606306 -133589126 + B4A SINE B4 1 284 -8 1 1070 248 274 21 21 chr1 63606309 63606406 -133589026 + (CATA)n Simple_repeat Simple_repeat 1 97 0 1 1070 470 139 12 0 chr1 63606408 63606494 -133588938 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1070 36 23 0 0 chr1 63606647 63606690 -133588742 + AT_rich Low_complexity Low_complexity 1 43 0 1 1070 951 298 45 21 chr1 63606951 63607242 -133588190 - Lx6 LINE L1 -169 7291 6994 1 1070 207 0 0 0 chr1 63607526 63607549 -133587883 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1070 251 289 92 46 chr1 63607551 63607635 -133587797 - PB1D10 SINE Alu -8 109 22 1 1070 305 215 11 92 chr1 63607635 63607722 -133587710 - ORR1D1 LTR MaLR 0 374 295 1 1070 425 231 0 13 chr1 63607695 63607774 -133587658 - ORR1D1 LTR MaLR -295 79 2 1 1070 398 129 0 12 chr1 63607893 63607979 -133587453 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1070 516 72 0 0 chr1 63607981 63608050 -133587382 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1070 474 280 173 0 chr1 63608564 63608789 -133586643 - L2a LINE L2 -68 3358 3095 1 1070 322 308 171 31 chr1 63608900 63609158 -133586274 - L2a LINE L2 -557 2862 2569 1 1070 180 0 0 0 chr1 63609443 63609463 -133585969 + (CAG)n Simple_repeat Simple_repeat 1 20 0 1 1070 30 0 0 0 chr1 63610316 63610346 -133585086 + AT_rich Low_complexity Low_complexity 1 30 0 1 1070 275 68 38 106 chr1 63611236 63611368 -133584064 + T-rich Low_complexity Low_complexity 5 127 0 1 1070 848 225 33 10 chr1 63611536 63611743 -133583689 - MTD LTR MaLR -30 389 196 1 1070 21 71 0 0 chr1 63611778 63611820 -133583612 + AT_rich Low_complexity Low_complexity 1 42 0 1 1070 553 127 7 87 chr1 63611887 63612025 -133583407 - Lx4A LINE L1 -3 7055 6929 1 1070 719 235 49 0 chr1 63612032 63612215 -133583217 - MTD LTR MaLR -212 209 18 1 1070 225 340 79 90 chr1 63612388 63612566 -133582866 + MT2B LTR ERVL 97 272 -329 1 1070 387 288 64 70 chr1 63612407 63612453 -133582979 + B4A SINE B4 50 166 -126 1 1070 526 243 0 0 chr1 63612453 63612560 -133582872 + B1F SINE Alu 1 107 -42 1 1070 387 288 64 70 chr1 63612560 63612579 -133582853 + B4A SINE B4 167 220 -72 1 1070 950 236 14 0 chr1 63612658 63612866 -133582566 + B3 SINE B2 2 212 -4 1 1070 258 333 111 37 chr1 63612929 63613119 -133582313 + MER63A DNA AcHobo 7 210 0 1 1070 345 283 156 41 chr1 63613465 63613734 -133581698 - L1M5 LINE L1 -730 5714 5415 1 1070 183 268 22 89 chr1 63614586 63614676 -133580756 + L3 LINE CR1 914 997 -3492 1 1070 646 260 112 16 chr1 63615167 63615575 -133579857 - L1MA4 LINE L1 -458 5842 5318 1 1070 2214 154 121 37 chr1 63616978 63617464 -133577968 + RLTR11A2 LTR ERVK 1 527 0 1 1070 663 299 67 67 chr1 63617995 63618028 -133577404 - MTEb LTR MaLR 0 379 342 1 1070 387 0 0 0 chr1 63618028 63618071 -133577361 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1070 189 0 0 0 chr1 63618071 63618091 -133577341 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1070 663 299 67 67 chr1 63618091 63618432 -133577000 - MTEb LTR MaLR -38 341 6 1 1070 280 277 19 38 chr1 63618437 63618542 -133576890 + MIR SINE MIR 12 114 -148 1 1070 21 0 0 0 chr1 63621222 63621243 -133574189 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 441 200 0 0 chr1 63621550 63621630 -133573802 + B3A SINE B2 1 80 -118 1 1070 412 246 84 8 chr1 63621623 63621742 -133573690 + B1F SINE Alu 22 149 0 1 1070 892 109 6 55 chr1 63621896 63622061 -133573371 - Lx3C LINE L1 0 6976 6820 1 1070 640 137 29 10 chr1 63622061 63622164 -133573268 - U6 snRNA snRNA 0 107 3 1 1070 554 110 18 0 chr1 63622505 63622614 -133572818 + (TCCC)n Simple_repeat Simple_repeat 2 112 0 2 1070 226 259 35 0 chr1 63622683 63622741 -133572691 - ID4 SINE ID -22 61 2 2 1070 515 209 0 60 chr1 63622980 63623097 -133572335 + B4A SINE B4 182 291 -1 2 1070 441 0 0 0 chr1 63623121 63623170 -133572262 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 2 1070 389 70 18 0 chr1 63623171 63623228 -133572204 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1070 593 250 0 0 chr1 63624040 63624152 -133571280 - PB1D10 SINE Alu -5 112 1 2 1070 1916 232 32 82 chr1 63624165 63624766 -133570666 - RLTR20A2 LTR ERVK -7 571 1 2 1070 530 274 44 0 chr1 63629007 63629142 -133566290 - B1F SINE Alu -7 142 2 2 1070 214 367 76 22 chr1 63630278 63630370 -133565062 + MIRb SINE MIR 29 125 -143 2 1070 960 38 23 15 chr1 63631138 63631271 -133564161 + B1_Mus2 SINE Alu 13 146 -1 2 1070 2498 136 57 8 chr1 63635366 63635767 -133559665 - MTC LTR MaLR 0 421 1 2 1070 556 236 9 0 chr1 63636632 63636742 -133558690 + B3 SINE B2 9 119 -97 2 1070 440 35 0 17 chr1 63638091 63638150 -133557282 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 2 1070 204 305 0 0 chr1 63640121 63640180 -133555252 + T-rich Low_complexity Low_complexity 2 60 0 2 1070 474 157 0 0 chr1 63642307 63642390 -133553042 + T-rich Low_complexity Low_complexity 1 83 0 2 1070 748 163 7 47 chr1 63643672 63643820 -133551612 - B1_Mur3 SINE Alu -5 144 3 2 1070 229 381 20 7 chr1 63645183 63645331 -133550101 - Charlie8 DNA MER1_type -2163 265 116 2 1070 249 180 0 0 chr1 63645411 63645461 -133549971 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1070 225 0 0 0 chr1 63645461 63645486 -133549946 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1070 207 194 0 0 chr1 63646183 63646219 -133549213 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1070 183 258 0 46 chr1 63646375 63646440 -133548992 - MIR SINE MIR -180 82 21 2 1070 319 262 54 31 chr1 63647792 63647922 -133547510 - MLT1A1 LTR MaLR -20 388 256 2 1070 2542 41 88 3 chr1 63648861 63649180 -133546252 + ORR1A1 LTR MaLR 1 346 0 2 1070 21 0 0 0 chr1 63650434 63650455 -133544977 + AT_rich Low_complexity Low_complexity 1 21 0 2 1070 316 293 0 0 chr1 63650813 63650895 -133544537 - ID4 SINE ID 0 83 2 2 1070 303 28 0 0 chr1 63650952 63650988 -133544444 + (CATA)n Simple_repeat Simple_repeat 3 38 0 2 1070 594 320 120 42 chr1 63651042 63651375 -133544057 - ORR1E LTR MaLR 0 359 1 2 1070 348 24 0 0 chr1 63652064 63652105 -133543327 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2 1070 201 74 0 0 chr1 63652229 63652256 -133543176 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1070 1024 286 56 41 chr1 63652529 63652868 -133542564 + MTE2a LTR MaLR 1 344 -35 2 1070 333 0 0 0 chr1 63653540 63653577 -133541855 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1070 25 75 0 0 chr1 63653908 63653961 -133541471 + AT_rich Low_complexity Low_complexity 1 53 0 2 1070 1157 68 7 0 chr1 63653961 63654107 -133541325 - B1_Mus2 SINE Alu 0 147 1 2 1070 247 269 0 0 chr1 63654231 63654283 -133541149 + B1F SINE Alu 10 61 -88 2 1070 263 258 140 0 chr1 63655380 63655473 -133539959 + B1_Mur1 SINE Alu 39 144 -5 2 1070 733 231 116 0 chr1 63656347 63656520 -133538912 - B3 SINE B2 -23 193 1 2 1070 1078 88 0 13 chr1 63656978 63657127 -133538305 - B1_Mus2 SINE Alu 0 147 1 2 1070 1205 65 101 0 chr1 63657749 63657917 -133537515 + B2_Mm2 SINE B2 2 186 -9 2 1070 198 0 0 0 chr1 63657972 63657994 -133537438 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1070 1344 62 73 0 chr1 63658364 63658390 -133537042 - B2_Mm1a SINE B2 0 193 162 2 1070 198 0 0 0 chr1 63658390 63658412 -133537020 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2 1070 1344 62 73 0 chr1 63658412 63658564 -133536868 - B2_Mm1a SINE B2 -32 161 3 2 1070 498 149 0 0 chr1 63663163 63663250 -133532182 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 2 1070 1907 14 0 0 chr1 63663825 63664041 -133531391 + L1Md_A LINE L1 6367 6582 0 2 1070 22 35 0 0 chr1 63664064 63664093 -133531339 + AT_rich Low_complexity Low_complexity 1 29 0 2 1070 291 85 0 0 chr1 63665662 63665709 -133529723 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 2 1070 495 0 0 0 chr1 63666868 63666923 -133528509 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1070 406 275 114 0 chr1 63668236 63668385 -133527047 - MER58B DNA MER1_type -137 204 39 2 1070 234 261 261 0 chr1 63668721 63668832 -133526600 + MIR SINE MIR 77 216 -46 2 1070 462 292 36 30 chr1 63668975 63669141 -133526291 - L1MD2 LINE L1 -23 6336 6170 2 1070 558 79 0 0 chr1 63669142 63669218 -133526214 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1070 1601 244 92 58 chr1 63670138 63670746 -133524686 + Lx9 LINE L1 7009 7637 -7 2 1070 284 0 0 27 chr1 63671159 63671196 -133524236 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 1070 536 287 44 19 chr1 63671403 63671563 -133523869 - RSINE1 SINE B4 0 165 2 2 1070 423 0 0 0 chr1 63671732 63671779 -133523653 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1070 237 349 12 0 chr1 63671793 63671879 -133523553 + (CATA)n Simple_repeat Simple_repeat 2 88 0 2 1070 335 87 0 0 chr1 63671886 63671932 -133523500 + HAL1-3A_ME LINE L1 1976 2021 -837 2 1070 267 262 48 48 chr1 63672407 63672575 -133522857 - L1M4c LINE L1 -4925 1459 1292 2 1070 239 289 0 0 chr1 63672728 63672804 -133522628 - L1M3de LINE L1 -4743 1910 1835 2 1070 4927 75 31 14 chr1 63673464 63674114 -133521318 + L1Md_F2 LINE L1 5922 6582 0 2 1070 370 164 16 0 chr1 63674123 63674184 -133521248 - B3 SINE B2 -149 67 6 2 1070 659 167 7 0 chr1 63675286 63675424 -133520008 + CT-rich Low_complexity Low_complexity 1 139 0 2 1070 780 302 63 0 chr1 63676025 63676230 -133519202 + ID_B1 SINE B4 6 223 -1 2 1070 554 274 68 83 chr1 63677620 63677898 -133517534 + B4A SINE B4 1 274 -18 2 1070 22 0 0 0 chr1 63677978 63678000 -133517432 + AT_rich Low_complexity Low_complexity 1 22 0 2 1070 678 290 49 67 chr1 63678663 63678992 -133516440 + MLT1B LTR MaLR 1 323 -67 2 1070 258 243 0 63 chr1 63679046 63679125 -133516307 + T-rich Low_complexity Low_complexity 1 74 0 2 1070 488 25 109 0 chr1 63679276 63679395 -133516037 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 1070 541 193 0 0 chr1 63679833 63679921 -133515511 + B1_Mur1 SINE Alu 50 137 -12 2 1070 252 0 0 0 chr1 63679921 63679949 -133515483 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 1070 205 86 0 28 chr1 63680565 63680601 -133514831 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 2 1070 11757 151 54 97 chr1 63681482 63683035 -133512397 + L1_Mur2 LINE L1 889 2305 -3572 2 1070 1005 68 121 0 chr1 63683035 63683167 -133512265 - B1_Mus1 SINE Alu 0 148 1 2 1070 11757 148 53 116 chr1 63683167 63684362 -133511070 + L1_Mur2 LINE L1 2306 3471 -2406 2 1070 210 71 0 0 chr1 63684362 63684390 -133511042 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1070 260 115 76 76 chr1 63684394 63684460 -133510972 - MER46C DNA MER2_type -19 319 254 2 1070 11757 148 53 116 chr1 63684460 63684761 -133510671 + L1_Mur2 LINE L1 3476 3850 -2027 2 1070 3797 212 124 66 chr1 63684771 63685952 -133509480 + Lx2B LINE L1 5671 6855 -145 2 1070 1234 48 7 7 chr1 63685990 63686138 -133509294 - B1_Mus1 SINE Alu 0 148 1 2 1070 567 40 0 0 chr1 63686157 63686231 -133509201 + (TAAG)n Simple_repeat Simple_repeat 4 77 0 2 1070 216 0 0 0 chr1 63686231 63686254 -133509178 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2 1070 1287 278 58 141 chr1 63686369 63687361 -133508071 + Charlie1a DNA MER1_type 496 1404 -51 2 1070 309 214 93 67 chr1 63689071 63689088 -133506344 - B1_Mur1 SINE Alu -1 148 136 2 1070 186 43 0 0 chr1 63689088 63689111 -133506321 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1070 309 214 93 67 chr1 63689111 63689168 -133506264 - B1_Mur1 SINE Alu -14 135 72 2 1070 387 103 0 0 chr1 63689170 63689228 -133506204 - MurERV4-int LTR ERVK -5178 82 25 2 1070 182 37 0 36 chr1 63689228 63689256 -133506176 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1070 658 110 120 0 chr1 63689258 63689358 -133506074 - B1_Mur4 SINE Alu -6 144 33 2 1070 335 0 0 62 chr1 63689400 63689448 -133505984 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1070 672 241 7 7 chr1 63689448 63689586 -133505846 - RSINE1 SINE B4 -16 149 12 2 1070 215 308 13 13 chr1 63689516 63689595 -133505837 - B3A SINE B2 -118 80 2 2 1070 35 63 0 0 chr1 63690171 63690234 -133505198 + AT_rich Low_complexity Low_complexity 1 63 0 2 1070 34 55 0 0 chr1 63691042 63691097 -133504335 + AT_rich Low_complexity Low_complexity 1 55 0 2 1070 304 321 0 13 chr1 63691147 63691226 -133504206 - RSINE1 SINE B4 -86 79 2 2 1070 386 266 0 94 chr1 63692241 63692411 -133503021 + L1MA10 LINE L1 6179 6332 -2 2 1070 279 0 0 0 chr1 63692601 63692632 -133502800 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 2 1070 539 263 112 39 chr1 63693095 63693407 -133502025 + L1ME4a LINE L1 5539 5873 -251 2 1070 497 257 18 0 chr1 63693582 63693695 -133501737 + PB1D7 SINE Alu 5 119 -1 2 1070 1231 62 7 0 chr1 63693749 63693894 -133501538 - B1_Mus2 SINE Alu 0 147 2 2 1070 826 272 11 22 chr1 63694205 63694389 -133501043 - B3A SINE B2 -16 182 1 2 1070 323 235 19 48 chr1 63695045 63695148 -133500284 - MLT1B LTR MaLR -21 369 268 2 1070 3013 281 45 28 chr1 63695171 63695467 -133499965 + Lx2B LINE L1 596 866 -5791 2 1070 432 0 0 0 chr1 63695467 63695515 -133499917 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1070 25729 144 34 14 chr1 63695515 63700630 -133494802 + Lx2B LINE L1 821 6039 -961 2 1070 1092 164 10 20 chr1 63700620 63700819 -133494613 - L1_Mur1 LINE L1 -792 5094 4898 2 133 6740 114 9 23 chr1 63700828 63701794 -133493638 + Lx2B LINE L1 6038 6990 -10 2 1071 897 329 50 22 chr1 63701883 63702247 -133493185 + MER82 DNA MER2_type 273 646 -7 3 1071 243 255 136 7 chr1 63702983 63703137 -133492295 - L1MD LINE L1 -1873 4273 4100 3 1071 600 279 40 118 chr1 63703820 63704044 -133491388 + B4 SINE B4 1 221 -71 3 1071 990 168 101 15 chr1 63704044 63704243 -133491189 + B3 SINE B2 1 216 0 3 1071 600 279 40 118 chr1 63704243 63704315 -133491117 + B4 SINE B4 222 274 -18 3 1071 209 262 0 0 chr1 63704362 63704404 -133491028 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1071 282 309 29 21 chr1 63704433 63704547 -133490885 + B1F1 SINE Alu 4 116 -1 3 1071 556 288 185 26 chr1 63704881 63705184 -133490248 + Lx8 LINE L1 6876 7226 -247 3 1071 639 231 132 7 chr1 63705624 63705768 -133489664 + RSINE1 SINE B4 2 163 -2 3 1071 2186 147 57 6 chr1 63707279 63707629 -133487803 - Lx2B LINE L1 0 7000 6633 3 1071 204 97 0 0 chr1 63708341 63708372 -133487060 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 3 1071 592 285 148 9 chr1 63708391 63708628 -133486804 - B4A SINE B4 -22 270 1 3 1071 23 0 0 0 chr1 63708787 63708810 -133486622 + AT_rich Low_complexity Low_complexity 1 23 0 3 1071 213 121 0 0 chr1 63709710 63709743 -133485689 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1071 607 180 156 0 chr1 63709769 63709891 -133485541 - B1_Mus1 SINE Alu -6 142 2 3 1071 711 197 91 0 chr1 63709911 63710043 -133485389 - B1_Mur3 SINE Alu -1 148 5 3 1071 1633 63 0 0 chr1 63710132 63710323 -133485109 - B2_Mm1a SINE B2 -2 191 1 3 1071 948 138 47 47 chr1 63710533 63710723 -133484709 - URR1A DNA MER1_type -3 223 34 3 1071 1020 283 124 35 chr1 63712274 63712732 -133482700 + L1MA9 LINE L1 5654 6152 -160 3 1071 350 274 60 26 chr1 63713059 63713175 -133482257 + RLTR23 LTR ERV1 311 430 0 3 1071 342 98 0 0 chr1 63713288 63713339 -133482093 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 3 1071 306 50 0 0 chr1 63713330 63713370 -133482062 + (TTTCC)n Simple_repeat Simple_repeat 4 43 0 3 1071 22 56 0 0 chr1 63713508 63713544 -133481888 + AT_rich Low_complexity Low_complexity 1 36 0 3 1071 411 21 0 0 chr1 63714161 63714209 -133481223 + (CAG)n Simple_repeat Simple_repeat 1 48 0 3 1071 1466 239 100 8 chr1 63715278 63715657 -133479775 - MTD LTR MaLR -5 414 1 3 1071 434 102 0 14 chr1 63715658 63715692 -133479740 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 3 1071 1326 78 0 0 chr1 63715692 63715872 -133479560 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1071 434 102 0 14 chr1 63715872 63715907 -133479525 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 3 1071 183 229 0 0 chr1 63716172 63716233 -133479199 + CT-rich Low_complexity Low_complexity 2 62 0 3 1071 1282 243 75 7 chr1 63716737 63717043 -133478389 + Lx8 LINE L1 6824 7150 -323 3 1071 555 43 0 0 chr1 63717100 63717170 -133478262 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1071 419 362 66 11 chr1 63717289 63717560 -133477872 + L1M3e LINE L1 156 441 -6589 3 1071 272 282 0 56 chr1 63717733 63717823 -133477609 + L1M3e LINE L1 1810 1894 -5136 3 1071 1184 146 19 52 chr1 63717828 63718038 -133477394 + ORR1D1 LTR MaLR 1 203 -171 3 1071 864 179 7 26 chr1 63718697 63718852 -133476580 + ORR1D1 LTR MaLR 223 374 0 3 1071 389 221 0 0 chr1 63719240 63719317 -133476115 + B4A SINE B4 3 79 -213 3 1071 7914 48 4 48 chr1 63719882 63721157 -133474275 + L1_Mus1 LINE L1 5351 6567 0 3 1071 1102 212 39 5 chr1 63721927 63722135 -133473297 + B3 SINE B2 2 216 0 3 1071 252 0 0 0 chr1 63722141 63722169 -133473263 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1071 193 268 27 40 chr1 63722595 63722669 -133472763 - L2a LINE L2 0 3426 3354 3 1071 288 77 0 0 chr1 63723090 63723129 -133472303 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 1071 350 203 14 0 chr1 63725820 63725894 -133469538 + MER5A DNA MER1_type 1 75 -114 3 1071 337 265 179 0 chr1 63726394 63726545 -133468887 - MER33 DNA MER1_type -146 178 1 3 1071 479 285 26 16 chr1 63727178 63727367 -133468065 - L1MA8 LINE L1 -41 6250 6060 3 1071 203 79 26 0 chr1 63727428 63727466 -133467966 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1071 1298 186 168 21 chr1 63727614 63727966 -133467466 + MTD LTR MaLR 13 402 -17 3 1071 830 71 29 0 chr1 63728861 63729001 -133466431 + (TCTA)n Simple_repeat Simple_repeat 4 147 0 3 1071 814 269 29 17 chr1 63729277 63729515 -133465917 + Lx8 LINE L1 6481 6721 -752 3 1071 569 320 104 16 chr1 63729598 63729906 -133465526 + MER2 DNA MER2_type 6 340 -5 3 1071 1030 193 66 5 chr1 63732239 63732437 -133462995 + B3 SINE B2 2 211 -5 3 1071 21 0 0 0 chr1 63732453 63732474 -133462958 + AT_rich Low_complexity Low_complexity 1 21 0 3 1071 1231 104 15 25 chr1 63732611 63732808 -133462624 + B2_Mm2 SINE B2 1 195 0 3 1071 503 256 61 100 chr1 63732865 63733095 -133462337 + ID_B1 SINE B4 4 224 0 3 1071 436 289 8 38 chr1 63734053 63734186 -133461246 + RSINE1 SINE B4 2 130 -35 3 1071 960 109 0 0 chr1 63734199 63734374 -133461058 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 1071 189 0 0 0 chr1 63735279 63735300 -133460132 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1071 360 94 0 0 chr1 63735489 63735542 -133459890 + (GGGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1071 693 278 149 22 chr1 63736168 63736607 -133458825 - L1MA7 LINE L1 -7 6284 5791 3 1071 271 343 0 0 chr1 63736627 63736726 -133458706 - L1MA7 LINE L1 -597 5694 5596 3 1071 414 0 0 0 chr1 63736767 63736813 -133458619 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1071 488 271 142 35 chr1 63736818 63737078 -133458354 - B4A SINE B4 -2 290 3 3 1071 402 21 0 0 chr1 63737124 63737171 -133458261 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1071 7956 31 0 0 chr1 63737191 63738102 -133457330 - L1Md_A LINE L1 0 6582 5672 3 1071 8098 24 0 0 chr1 63738100 63739022 -133456410 + L1Md_A LINE L1 4762 5683 -200 3 1071 253 239 52 42 chr1 63738989 63739085 -133456347 - L1MA7 LINE L1 -741 5550 5454 3 1071 21 57 0 0 chr1 63739254 63739289 -133456143 + AT_rich Low_complexity Low_complexity 1 35 0 3 1071 1587 301 66 40 chr1 63739471 63739660 -133455772 - L1MA4A LINE L1 -1477 5996 5796 3 1071 3481 23 5 0 chr1 63739660 63740054 -133455378 - MTA_Mm LTR MaLR 0 396 1 3 1071 9689 24 0 0 chr1 63740054 63741152 -133454280 - MTA_Mm-int LTR MaLR 0 1098 1 3 1071 3484 23 5 0 chr1 63741152 63741546 -133453886 - MTA_Mm LTR MaLR 0 396 1 3 1071 1587 289 74 39 chr1 63741546 63742506 -133452926 - L1MA4A LINE L1 -471 5832 4787 3 1071 258 81 0 0 chr1 63742514 63742551 -133452881 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1071 381 102 0 0 chr1 63742882 63742941 -133452491 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 3 1071 1140 197 208 13 chr1 63742996 63743309 -133452123 + ORR1D1 LTR MaLR 1 374 0 3 1071 462 256 109 28 chr1 63743501 63743727 -133451705 + LTR84b LTR ERVL 294 546 -215 3 1071 306 259 37 0 chr1 63744118 63744199 -133451233 + MER5A DNA MER1_type 2 85 -104 3 1071 578 239 8 0 chr1 63744248 63744378 -133451054 - ID_B1 SINE B4 -3 221 91 3 1071 485 239 48 27 chr1 63744378 63744389 -133451043 - B1F2 SINE Alu 0 144 1 3 1071 207 200 0 0 chr1 63744445 63744490 -133450942 + A-rich Low_complexity Low_complexity 1 45 0 3 1071 2139 242 29 37 chr1 63744521 63745076 -133450356 + Lx5 LINE L1 6106 6990 -60 3 1071 534 157 108 0 chr1 63745212 63745314 -133450118 + B1_Mur2 SINE Alu 32 144 -5 3 1071 5180 101 71 44 chr1 63745960 63746842 -133448590 + RMER17A2 LTR ERVK 1 906 0 3 1071 21 0 0 0 chr1 63747451 63747472 -133447960 + GC_rich Low_complexity Low_complexity 1 21 0 3 1071 235 204 0 0 chr1 63748442 63748491 -133446941 - PB1D7 SINE Alu -5 115 67 3 1071 207 162 0 0 chr1 63748717 63748754 -133446678 + (TTCTG)n Simple_repeat Simple_repeat 2 38 0 3 1071 2237 128 45 65 chr1 63750133 63750535 -133444897 - ORR1B1 LTR MaLR 0 394 1 3 1071 297 258 23 61 chr1 63750615 63750696 -133444736 - L1MB1 LINE L1 -26 6163 6087 3 1071 2477 86 6 0 chr1 63750696 63751021 -133444411 + ORR1A2 LTR MaLR 1 327 0 3 1071 297 258 23 61 chr1 63751021 63751071 -133444361 - L1MB1 LINE L1 -103 6086 6037 3 1071 3266 105 21 2 chr1 63751360 63751838 -133443594 + Lx2B LINE L1 6508 6994 -6 3 1071 1300 122 27 0 chr1 63753821 63754009 -133441423 - B2_Mm2 SINE B2 -1 194 2 3 1071 408 125 0 0 chr1 63754206 63754270 -133441162 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1071 599 205 409 0 chr1 63754270 63754461 -133440971 - B4A SINE B4 -23 269 1 3 1071 243 0 0 0 chr1 63756019 63756046 -133439386 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1071 719 203 0 42 chr1 63756053 63756197 -133439235 - B1_Mur2 SINE Alu -6 143 6 3 1071 192 40 0 0 chr1 63756212 63756237 -133439195 + (TTGG)n Simple_repeat Simple_repeat 4 28 0 3 1071 209 176 0 0 chr1 63756250 63756284 -133439148 + GA-rich Low_complexity Low_complexity 1 34 0 3 1071 21 71 0 0 chr1 63756346 63756388 -133439044 + AT_rich Low_complexity Low_complexity 1 42 0 3 1071 395 253 78 3 chr1 63756507 63756657 -133438775 + B3A SINE B2 1 172 -21 3 1071 256 320 112 34 chr1 63756717 63756895 -133438537 + MLT1C LTR MaLR 182 373 -94 3 1071 441 0 0 0 chr1 63757131 63757180 -133438252 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1071 425 313 106 39 chr1 63757210 63757466 -133437966 - B4A SINE B4 -16 276 4 3 1071 597 272 7 0 chr1 63757496 63757632 -133437800 - B3 SINE B2 0 216 80 3 1071 420 20 0 0 chr1 63758272 63758321 -133437111 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1071 568 116 0 0 chr1 63758644 63758730 -133436702 - MTC LTR MaLR 0 421 336 3 1071 627 81 0 0 chr1 63758828 63758914 -133436518 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1071 247 280 72 94 chr1 63759002 63759183 -133436249 - RMER10A LTR ERVL -233 209 33 3 1071 1584 158 67 3 chr1 63759372 63759684 -133435748 - MTC LTR MaLR -89 332 1 3 1071 183 389 35 17 chr1 63762535 63762650 -133432782 - MIRc SINE MIR -117 151 35 3 1071 826 196 139 60 chr1 63762967 63763104 -133432328 - RLTR25A LTR ERVK 0 1103 952 3 1071 264 77 0 0 chr1 63763104 63763143 -133432289 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 4 1071 826 196 139 60 chr1 63763143 63763271 -133432161 - RLTR25A LTR ERVK -152 951 817 3 1071 314 238 127 32 chr1 63763356 63763482 -133431950 - RLTR25A LTR ERVK -174 854 717 3 1071 382 127 0 0 chr1 63763477 63763540 -133431892 + RLTR25A LTR ERVK 732 794 -309 4 1071 701 201 10 114 chr1 63763538 63763740 -133431692 - RLTR31A_Mm LTR ERVK -403 181 1 4 1071 1899 239 43 47 chr1 63763741 63764386 -133431046 - RMER3D-int LTR ERVK -1 2841 2199 4 1071 431 189 94 39 chr1 63764410 63764524 -133430908 + ID_B1 SINE B4 91 211 -13 4 1071 279 21 41 20 chr1 63764524 63764573 -133430859 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 4 1071 431 189 94 39 chr1 63764573 63764585 -133430847 + ID_B1 SINE B4 212 223 -1 4 1071 2272 171 37 2 chr1 63764586 63765019 -133430413 - RLTR25A LTR ERVK -655 448 1 4 1071 336 227 0 0 chr1 63765661 63765736 -133429696 - ID4 SINE ID -7 76 2 4 1071 453 234 8 24 chr1 63765793 63765920 -133429512 + Tigger7 DNA MER2_type 2276 2400 -91 4 1071 1299 39 0 0 chr1 63766679 63766834 -133428598 - L1_Mus1 LINE L1 0 6567 6413 4 1071 342 0 0 0 chr1 63767916 63767954 -133427478 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1071 322 220 33 0 chr1 63768711 63768802 -133426630 + PB1D9 SINE Alu 26 119 -1 4 1071 478 258 16 31 chr1 63769736 63769864 -133425568 + RSINE1 SINE B4 3 128 -37 4 1071 261 0 0 0 chr1 63769912 63769941 -133425491 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1071 425 401 31 17 chr1 63770247 63770600 -133424832 + ERVL-E-int LTR ERVL 4102 4459 -1208 4 1071 629 349 43 61 chr1 63771478 63771853 -133423579 + LTR16A LTR ERVL 24 391 -60 4 1071 187 54 54 0 chr1 63771969 63772006 -133423426 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 4 1071 293 309 0 24 chr1 63772637 63772720 -133422712 + RSINE1 SINE B4 2 82 -83 4 1071 618 219 47 0 chr1 63774485 63774613 -133420819 + B1_Mur1 SINE Alu 1 134 -15 4 1071 351 0 0 0 chr1 63774614 63774653 -133420779 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1071 2235 69 66 0 chr1 63775455 63775772 -133419660 - ORR1A1 LTR MaLR -8 338 1 4 1071 486 115 23 0 chr1 63776062 63776149 -133419283 + L1Md_T LINE L1 6494 6582 0 4 1071 232 169 0 40 chr1 63777653 63777727 -133417705 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 1071 212 172 52 0 chr1 63780453 63780511 -133414921 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1071 207 108 0 26 chr1 63780518 63780556 -133414876 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 4 1071 263 328 158 23 chr1 63780903 63781168 -133414264 + Tigger15a DNA TcMar 386 686 -29 4 1071 339 228 37 37 chr1 63785292 63785374 -133410058 + B1F SINE Alu 5 86 -63 4 1071 611 272 167 50 chr1 63786244 63786688 -133408744 - L1MB1 LINE L1 -14 6175 5680 4 1071 362 318 15 31 chr1 63786693 63786823 -133408609 + ID_B1 SINE B4 49 176 -48 4 1071 538 191 17 52 chr1 63786735 63786851 -133408581 + PB1D7 SINE Alu 9 120 0 4 1071 1008 262 295 39 chr1 63787101 63788840 -133406592 - L1MB1 LINE L1 -677 5491 3308 4 1071 332 184 146 0 chr1 63788850 63788953 -133406479 + MER2 DNA MER2_type 97 214 -131 4 1071 629 273 30 30 chr1 63788964 63789130 -133406302 - ID_B1 SINE B4 -42 182 17 4 1071 234 266 60 45 chr1 63789075 63789142 -133406290 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 1071 1245 62 7 0 chr1 63789260 63789405 -133406027 - B1_Mus2 SINE Alu -1 146 1 4 1071 814 269 167 65 chr1 63789431 63789561 -133405871 - L1MB1 LINE L1 -2936 3204 3086 4 1071 1189 212 19 0 chr1 63789561 63789773 -133405659 - B3 SINE B2 0 216 1 4 1071 814 269 167 65 chr1 63789773 63790433 -133404999 - L1MB1 LINE L1 -3055 3085 2335 4 1071 498 17 0 0 chr1 63790433 63790492 -133404940 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1071 814 269 167 65 chr1 63790492 63790649 -133404783 - L1MB1 LINE L1 -3806 2334 2157 4 1071 1135 260 130 9 chr1 63790649 63790987 -133404445 - MTEb LTR MaLR 0 379 1 4 1071 814 269 167 65 chr1 63790987 63791030 -133404402 - L1MB1 LINE L1 -3984 2156 2112 4 1071 350 323 30 48 chr1 63792001 63792167 -133403265 + MIR SINE MIR 29 191 -71 4 1071 408 227 49 98 chr1 63793018 63793034 -133402398 - PB1D9 SINE Alu 0 120 108 4 1071 249 33 0 0 chr1 63793034 63793064 -133402368 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 4 1071 408 227 49 98 chr1 63793064 63793169 -133402263 - PB1D9 SINE Alu -13 107 5 4 1071 2108 214 25 65 chr1 63793544 63794034 -133401398 + Lx7 LINE L1 6946 7415 -281 4 1071 474 18 0 0 chr1 63794044 63794099 -133401333 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1071 261 0 0 0 chr1 63794099 63794127 -133401305 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1071 583 151 94 16 chr1 63794177 63794305 -133401127 + Lx7 LINE L1 7559 7696 0 4 1071 3005 271 106 30 chr1 63794854 63795986 -133399446 - Lx9 LINE L1 -45 7599 6382 4 1071 287 200 11 130 chr1 63800416 63800508 -133394924 - MIR3 SINE MIR -17 191 111 4 1071 201 281 0 17 chr1 63800478 63800536 -133394896 - MIRm SINE MIR -130 146 90 4 1071 480 172 35 0 chr1 63800965 63801052 -133394380 + Lx3B LINE L1 6880 6969 -4 4 1071 227 322 17 0 chr1 63801100 63801159 -133394273 + L1M5 LINE L1 5513 5572 -552 4 1071 617 232 106 132 chr1 63802367 63802556 -133392876 + B3A SINE B2 7 193 -5 4 1071 22 0 0 0 chr1 63803193 63803215 -133392217 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 993 54 0 15 chr1 63803227 63803358 -133392074 - L1Md_F2 LINE L1 -12 6570 6442 4 1071 3224 70 0 0 chr1 63803360 63803757 -133391675 + L1_Mus1 LINE L1 6051 6447 -120 4 1071 466 246 8 41 chr1 63803793 63803916 -133391516 - RSINE1 SINE B4 -36 129 11 4 1071 1280 45 13 0 chr1 63803991 63804147 -133391285 - L1Md_F2 LINE L1 -484 6098 5941 4 1071 1581 35 96 0 chr1 63804147 63804344 -133391088 + L1Md_F2 LINE L1 6366 6581 -1 4 1071 375 23 0 0 chr1 63804367 63804411 -133391021 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 4 1071 1080 282 61 16 chr1 63804987 63805365 -133390067 - Lx9 LINE L1 -147 7497 7103 4 1071 2935 266 61 60 chr1 63805366 63806130 -133389302 - Lx7 LINE L1 -1491 6205 5445 4 1071 216 97 0 0 chr1 63806130 63806161 -133389271 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1071 2935 264 74 52 chr1 63806161 63806852 -133388580 - Lx7 LINE L1 -436 5444 4724 4 1071 607 121 9 53 chr1 63806877 63806990 -133388442 - B1_Mur3 SINE Alu 0 149 42 4 1071 4438 115 19 3 chr1 63807039 63807684 -133387748 - Lx2 LINE L1 -35 6962 6308 4 1071 3921 160 16 3 chr1 63807681 63808359 -133387073 + L1_Mur2 LINE L1 4736 5422 -455 4 1071 268 228 94 42 chr1 63808524 63808620 -133386812 - L1M3 LINE L1 -345 5838 5738 4 1071 236 320 0 39 chr1 63808842 63808920 -133386512 - MARNA DNA Mariner -249 337 263 4 1071 278 311 64 32 chr1 63808929 63809085 -133386347 - MIR SINE MIR -12 250 90 4 1071 188 288 34 0 chr1 63809499 63809558 -133385874 + MIRc SINE MIR 96 156 -112 4 1071 246 296 14 0 chr1 63810926 63810997 -133384435 - MIRb SINE MIR -45 223 152 4 1071 317 314 29 67 chr1 63811233 63811422 -133384010 - MIRb SINE MIR -70 198 4 4 1071 432 0 0 0 chr1 63813346 63813394 -133382038 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1071 200 281 17 34 chr1 63814520 63814579 -133380853 + MIR3 SINE MIR 113 170 -38 4 1071 248 333 0 0 chr1 63816268 63816331 -133379101 - MIRc SINE MIR -52 216 154 4 1071 22 35 0 0 chr1 63817291 63817320 -133378112 + AT_rich Low_complexity Low_complexity 1 29 0 4 1071 2309 113 76 83 chr1 63818104 63818499 -133376933 + ORR1B1 LTR MaLR 1 392 -2 4 1071 953 265 72 40 chr1 63818621 63818995 -133376437 - MLT1D LTR MaLR 0 505 120 4 1071 6876 51 0 5 chr1 63819023 63819825 -133375607 - L1Md_F2 LINE L1 -1 6581 5784 4 1071 6923 55 1 0 chr1 63819825 63820664 -133374768 + L1Md_F2 LINE L1 4952 5791 -92 4 1071 450 0 0 0 chr1 63820670 63820720 -133374712 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 1071 1332 50 0 0 chr1 63820720 63820880 -133374552 - B2_Mm1a SINE B2 -33 160 1 4 1071 502 226 68 78 chr1 63820939 63821016 -133374416 - L1MC LINE L1 -1474 4672 4595 4 1071 796 283 33 0 chr1 63821016 63821228 -133374204 - ID_B1 SINE B4 -1 223 5 4 1071 502 226 68 78 chr1 63821228 63821342 -133374090 - L1MC LINE L1 -1552 4594 4483 4 1071 2252 145 33 104 chr1 63821345 63821596 -133373836 - MTC LTR MaLR 0 421 210 4 1071 1695 45 0 0 chr1 63821596 63821794 -133373638 - L1_Mus1 LINE L1 -2 6565 6368 4 1071 942 149 0 7 chr1 63821796 63821931 -133373501 - B1_Mur3 SINE Alu -15 134 1 4 1071 2252 145 33 104 chr1 63821931 63822129 -133373303 - MTC LTR MaLR -212 209 1 4 1071 290 309 44 126 chr1 63822169 63822331 -133373101 - L1MC LINE L1 -1704 4442 4283 4 1071 1249 68 0 0 chr1 63822331 63822478 -133372954 - B1_Mus2 SINE Alu 0 147 1 4 1071 290 309 44 126 chr1 63822478 63822539 -133372893 - L1MC LINE L1 -1864 4282 4253 4 1071 255 266 31 0 chr1 63822539 63822603 -133372829 - ID4_ SINE ID -16 67 2 4 1071 290 309 44 126 chr1 63822603 63822614 -133372818 - L1MC LINE L1 -1894 4252 4251 4 1071 384 303 42 7 chr1 63822614 63822757 -133372675 - B1F SINE Alu -1 148 1 4 1071 290 309 44 126 chr1 63822757 63822949 -133372483 - L1MC LINE L1 -1896 4250 4049 4 1071 232 331 136 14 chr1 63823539 63823686 -133371746 + L3b LINE CR1 191 355 -127 4 1071 410 223 25 0 chr1 63823781 63823938 -133371494 + CT-rich Low_complexity Low_complexity 2 162 0 4 1071 225 0 0 0 chr1 63824184 63824209 -133371223 + (TATG)n Simple_repeat Simple_repeat 1 25 0 4 1071 22 0 0 0 chr1 63824283 63824305 -133371127 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 287 125 361 0 chr1 63824435 63824507 -133370925 - Lx4A LINE L1 -312 6746 6649 4 1071 290 161 54 0 chr1 63824507 63824563 -133370869 + Lx4B LINE L1 6895 6953 -105 4 1071 186 43 0 0 chr1 63824583 63824606 -133370826 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1071 2039 218 80 24 chr1 63825474 63825972 -133369460 - RLTR11A2 LTR ERVK -1 526 1 4 1071 516 59 0 0 chr1 63826340 63826408 -133369024 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1071 983 288 29 43 chr1 63826418 63826694 -133368738 - B4A SINE B4 -20 272 1 4 1071 7214 14 1 0 chr1 63828148 63828957 -133366475 + L1Md_T LINE L1 4777 5586 -297 4 1071 8578 54 0 0 chr1 63828957 63829953 -133365479 + L1Md_T LINE L1 5587 6582 0 4 1071 388 252 57 70 chr1 63831439 63831597 -133363835 + MLT1J LTR MaLR 356 511 -1 4 1072 1084 162 122 0 chr1 63833827 63834024 -133361408 - URR1A DNA MER1_type 0 226 6 4 1072 404 211 0 0 chr1 63834313 63834384 -133361048 - URR1A DNA MER1_type -153 73 3 4 1072 216 0 0 0 chr1 63834503 63834527 -133360905 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1072 452 18 18 0 chr1 63834527 63834583 -133360849 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1072 627 108 0 0 chr1 63834583 63834676 -133360756 + (GAA)n Simple_repeat Simple_repeat 3 95 0 4 1072 202 42 0 0 chr1 63834676 63834700 -133360732 + (GGGGA)n Simple_repeat Simple_repeat 4 27 0 5 1072 294 179 0 0 chr1 63834701 63834757 -133360675 + A-rich Low_complexity Low_complexity 1 56 0 5 1072 367 316 110 38 chr1 63834757 63834994 -133360438 - MLT1J LTR MaLR -258 254 1 5 1072 389 172 83 30 chr1 63835452 63835584 -133359848 + RLTR43A LTR ERVK 201 339 -25 5 1072 347 115 0 32 chr1 63835586 63835649 -133359783 + (TCTCCC)n Simple_repeat Simple_repeat 1 61 0 5 1072 216 121 0 0 chr1 63836163 63836196 -133359236 - B3A SINE B2 -165 33 1 5 1072 428 183 11 0 chr1 63837071 63837164 -133358268 + CT-rich Low_complexity Low_complexity 5 98 0 5 1072 198 300 121 11 chr1 63837201 63837292 -133358140 - L2a LINE L2 -3 3423 3323 5 1072 255 103 0 0 chr1 63838094 63838133 -133357299 + (CAT)n Simple_repeat Simple_repeat 1 39 0 5 1072 817 272 20 25 chr1 63838141 63838341 -133357091 - B3 SINE B2 -17 199 1 5 1072 396 219 55 8 chr1 63838355 63838498 -133356934 - L1MA9 LINE L1 -1 6311 6158 5 1072 362 225 57 14 chr1 63838566 63838706 -133356726 - L1MA5 LINE L1 -1 6299 6154 5 1072 8966 111 30 18 chr1 63838708 63840172 -133355260 + Lx3B LINE L1 5521 7050 0 5 1072 186 43 0 0 chr1 63841350 63841373 -133354059 + (CACCC)n Simple_repeat Simple_repeat 1 23 0 5 1072 1788 246 60 8 chr1 63841578 63841976 -133353456 + MTD LTR MaLR 1 419 0 5 1072 506 344 152 18 chr1 63842388 63842717 -133352715 - LTR16A LTR ERVL -26 425 53 5 1072 605 287 95 6 chr1 63843606 63843764 -133351668 - B3A SINE B2 -26 172 1 5 1072 322 333 61 20 chr1 63843783 63843930 -133351502 - HERV16-int LTR ERVL -4345 651 499 5 1072 23 0 0 0 chr1 63843963 63843986 -133351446 + AT_rich Low_complexity Low_complexity 1 23 0 5 1072 354 45 0 0 chr1 63844058 63844102 -133351330 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 1072 39936 52 12 4 chr1 63844300 63850774 -133344658 - L1Md_T LINE L1 0 6582 99 5 1072 634 221 6 23 chr1 63850775 63850951 -133344481 - L1Md_F LINE L1 -6316 203 31 5 1072 529 399 58 9 chr1 63851040 63851366 -133344066 - LTR16A LTR ERVL -79 372 31 5 1072 1174 237 94 13 chr1 63851837 63852145 -133343287 - MER2 DNA MER2_type -5 340 8 5 1072 458 272 66 30 chr1 63852963 63853130 -133342302 - B4A SINE B4 -118 174 2 5 1072 280 272 0 20 chr1 63853719 63853869 -133341563 + (CATA)n Simple_repeat Simple_repeat 4 150 0 5 1072 382 220 31 12 chr1 63853848 63854009 -133341423 + (CATATA)n Simple_repeat Simple_repeat 4 167 0 5 1072 290 271 24 0 chr1 63854014 63854099 -133341333 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1072 278 275 23 12 chr1 63854125 63854298 -133341134 + (CATA)n Simple_repeat Simple_repeat 1 175 0 5 1072 2482 134 34 10 chr1 63854333 63854718 -133340714 + ORR1B1 LTR MaLR 1 394 0 5 1072 9575 157 37 22 chr1 63856678 63860845 -133334587 + Lx5 LINE L1 882 7050 0 5 1072 387 0 0 0 chr1 63861065 63861108 -133334324 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1072 318 26 0 0 chr1 63861108 63861146 -133334286 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1072 26 0 0 0 chr1 63861744 63861770 -133333662 + AT_rich Low_complexity Low_complexity 1 26 0 5 1072 393 22 0 0 chr1 63862139 63862185 -133333247 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1072 466 286 137 10 chr1 63862293 63862600 -133332832 - L1M5 LINE L1 -1310 4836 4491 5 1072 263 326 22 0 chr1 63862846 63862935 -133332497 + MER20 DNA MER1_type 1 91 -128 5 1072 639 88 0 0 chr1 63863083 63863174 -133332258 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1072 249 197 81 40 chr1 63863188 63863262 -133332170 + RLTR25B LTR ERVK 433 509 -519 5 1072 679 110 20 0 chr1 63863197 63863297 -133332135 + B1_Mur3 SINE Alu 40 141 -8 5 1072 210 37 0 0 chr1 63863297 63863324 -133332108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1072 284 259 35 26 chr1 63863403 63863518 -133331914 - L1ME3B LINE L1 -212 6028 5913 5 1072 703 306 62 122 chr1 63863539 63863923 -133331509 + MTE2a LTR MaLR 10 370 -9 5 1072 286 345 48 10 chr1 63864152 63864410 -133331022 - L1ME3B LINE L1 -690 5550 5274 5 1072 519 256 123 35 chr1 63864497 63864667 -133330765 + B3A SINE B2 6 190 -8 5 1072 270 0 0 0 chr1 63865026 63865056 -133330376 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1072 967 163 139 16 chr1 63865150 63865337 -133330095 + B3 SINE B2 1 210 -6 5 1072 258 105 0 0 chr1 63865338 63865376 -133330056 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1072 243 0 0 0 chr1 63865756 63865783 -133329649 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 5 1072 536 192 16 31 chr1 63865794 63865923 -133329509 - L1Md_F3 LINE L1 0 6584 6458 5 1072 461 348 29 5 chr1 63866626 63866831 -133328601 + MIR SINE MIR 17 226 -36 5 1072 234 0 0 0 chr1 63867752 63867778 -133327654 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1072 597 275 174 0 chr1 63867992 63868280 -133327152 - MER2 DNA MER2_type -1 344 6 5 1072 762 156 6 13 chr1 63869593 63869749 -133325683 + CT-rich Low_complexity Low_complexity 2 156 0 5 1072 387 113 0 0 chr1 63870183 63870245 -133325187 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1072 339 303 115 0 chr1 63871707 63871829 -133323603 - MLT1G LTR MaLR -149 406 271 5 1072 589 274 71 12 chr1 63871855 63872025 -133323407 - MLT1G LTR MaLR -406 185 6 5 1072 300 137 0 0 chr1 63872325 63872376 -133323056 + (TCC)n Simple_repeat Simple_repeat 1 51 0 5 1072 244 333 32 0 chr1 63872380 63872473 -133322959 - MER112 DNA MER1_type -164 97 2 5 1072 476 247 132 24 chr1 63873521 63873724 -133321708 - MER58B DNA MER1_type -13 328 105 5 1072 1223 279 97 16 chr1 63873946 63874420 -133321012 + L1MB3 LINE L1 5661 6160 -23 5 1072 413 259 50 36 chr1 63875043 63875183 -133320249 + L2b LINE L2 3234 3375 0 5 1072 423 0 0 0 chr1 63875302 63875349 -133320083 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1072 665 174 8 0 chr1 63875696 63875828 -133319604 + CT-rich Low_complexity Low_complexity 2 134 0 5 1072 249 322 46 0 chr1 63876426 63876513 -133318919 - MIRm SINE MIR -146 130 37 5 1072 42269 5 0 0 chr1 63876543 63883108 -133312324 - L1Md_A LINE L1 0 6582 18 5 1072 1276 240 34 67 chr1 63883266 63883654 -133311778 + MTE2a LTR MaLR 3 377 -2 5 1072 588 224 24 1 chr1 63884462 63884614 -133310818 - L1M2 LINE L1 -1334 4809 4657 5 1072 393 286 68 0 chr1 63884623 63884756 -133310676 + L1MA6 LINE L1 4860 5001 -1142 5 1072 8328 42 3 5 chr1 63884759 63886247 -133309185 - L1Md_F2 LINE L1 -1 6581 5096 5 1072 17291 43 0 1 chr1 63886245 63888318 -133307114 + L1Md_F2 LINE L1 3515 5586 -297 5 1072 8067 68 0 12 chr1 63888318 63889314 -133306118 + L1Md_F2 LINE L1 5587 6570 -12 5 1072 2056 284 62 48 chr1 63889314 63889984 -133305448 + L1MA6 LINE L1 5616 6300 0 5 1072 363 96 0 0 chr1 63890103 63890155 -133305277 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1072 1190 242 76 9 chr1 63892804 63893133 -133302299 + RLTR28B LTR ERVL 3 353 -128 5 1072 345 331 75 0 chr1 63893251 63893384 -133302048 - ID_B1 SINE B4 0 224 82 5 1072 279 0 0 0 chr1 63894103 63894134 -133301298 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1072 243 0 0 0 chr1 63894371 63894398 -133301034 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1072 403 167 14 0 chr1 63894414 63894486 -133300946 - B2_Mm2 SINE B2 -121 74 2 5 1072 225 0 0 0 chr1 63895919 63895944 -133299488 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1072 284 224 0 43 chr1 63895980 63896050 -133299382 + PB1D7 SINE Alu 54 120 0 5 1072 215 103 26 0 chr1 63896070 63896109 -133299323 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 5 1072 21 71 0 0 chr1 63897199 63897241 -133298191 + AT_rich Low_complexity Low_complexity 1 42 0 5 1072 1505 77 14 0 chr1 63898179 63898388 -133297044 + L1_Mus3 LINE L1 6426 6637 -1 5 1072 1186 33 0 0 chr1 63899000 63899150 -133296282 - L1Md_T LINE L1 0 6582 6433 5 1072 1201 55 0 0 chr1 63899166 63899312 -133296120 + B1_Mus2 SINE Alu 2 147 0 5 1072 843 213 0 6 chr1 63900591 63900761 -133294671 + B3 SINE B2 48 216 0 5 1072 230 0 33 0 chr1 63900914 63900944 -133294488 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1072 1177 61 0 13 chr1 63900944 63901082 -133294350 - B1_Mus2 SINE Alu -9 138 1 5 1072 411 162 0 0 chr1 63902438 63902537 -133292895 + CT-rich Low_complexity Low_complexity 2 100 0 5 1072 1127 81 0 7 chr1 63902679 63902828 -133292604 - B1_Mus1 SINE Alu 0 148 1 5 1072 284 298 46 163 chr1 63903029 63903449 -133291983 - MLT1D LTR MaLR 0 390 23 5 1072 38955 13 3 7 chr1 63905704 63911104 -133284328 + L1Md_A LINE L1 214 5586 -297 5 1072 8983 15 0 0 chr1 63911104 63912100 -133283332 + L1Md_A LINE L1 5587 6582 0 5 1072 222 118 0 0 chr1 63912381 63912415 -133283017 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 5 1072 249 333 149 32 chr1 63912898 63913146 -133282286 + B4A SINE B4 2 278 -14 5 1072 567 85 0 0 chr1 63913152 63913234 -133282198 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1072 21 57 0 0 chr1 63913288 63913323 -133282109 + AT_rich Low_complexity Low_complexity 1 35 0 5 1072 186 43 0 0 chr1 63913611 63913634 -133281798 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1072 405 95 0 0 chr1 63913634 63913697 -133281735 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1072 260 312 91 35 chr1 63914102 63914245 -133281187 + MIR3 SINE MIR 46 196 -12 5 1072 770 258 43 79 chr1 63915374 63915677 -133279755 + B4 SINE B4 1 292 0 5 1072 247 290 43 0 chr1 63916023 63916092 -133279340 - RSINE1 SINE B4 -63 102 31 5 1072 1046 312 77 24 chr1 63916146 63916911 -133278521 - L1M3 LINE L1 -1190 4950 4145 5 1072 358 105 53 0 chr1 63916913 63916989 -133278443 + (TCTCTG)n Simple_repeat Simple_repeat 1 80 0 5 1072 382 272 62 66 chr1 63917027 63917271 -133278161 - L1M3 LINE L1 -2010 4130 3888 5 1072 290 216 0 13 chr1 63918986 63919061 -133276371 + GA-rich Low_complexity Low_complexity 3 76 0 6 1072 985 302 37 9 chr1 63919792 63920113 -133275319 - MER2 DNA MER2_type -1 344 15 6 1072 414 0 0 0 chr1 63921473 63921519 -133273913 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1072 435 38 0 0 chr1 63921980 63922033 -133273399 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1072 1020 83 0 0 chr1 63922099 63922243 -133273189 + (GA)n Simple_repeat Simple_repeat 1 144 0 6 1072 192 316 90 26 chr1 63924136 63924292 -133271140 + MER5A DNA MER1_type 5 170 -19 6 1072 542 299 36 22 chr1 63925595 63925817 -133269615 + MLT1A LTR MaLR 137 361 -13 6 1072 225 244 149 11 chr1 63927148 63927235 -133268197 + LTR40a LTR ERVL 419 517 -2 6 1072 1058 234 174 19 chr1 63927250 63927489 -133267943 + Lx9 LINE L1 7228 7510 -134 6 1072 216 0 0 0 chr1 63927489 63927513 -133267919 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1072 1058 234 174 19 chr1 63927513 63927634 -133267798 + Lx9 LINE L1 7511 7643 -1 6 1072 209 255 0 0 chr1 63927743 63927794 -133267638 + C-rich Low_complexity Low_complexity 3 53 0 6 1072 180 0 0 0 chr1 63928035 63928055 -133267377 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1072 414 278 68 62 chr1 63928501 63928563 -133266869 - L1M4 LINE L1 -3062 3084 3029 6 1072 1046 148 28 11 chr1 63928563 63928741 -133266691 - B2_Mm2 SINE B2 -14 181 1 6 1072 414 278 68 62 chr1 63928741 63928985 -133266447 - L1M4 LINE L1 -3118 3028 2776 6 1072 1023 242 57 37 chr1 63929245 63929545 -133265887 - Lx6 LINE L1 -6 7454 7149 6 1072 261 0 0 0 chr1 63930543 63930572 -133264860 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1072 501 94 0 0 chr1 63930572 63930657 -133264775 + (CAGAGA)n Simple_repeat Simple_repeat 6 90 0 6 1072 912 263 57 43 chr1 63930827 63931109 -133264323 - B4A SINE B4 -6 286 1 6 1072 945 116 84 0 chr1 63931192 63931347 -133264085 - B2_Mm2 SINE B2 -26 169 2 6 1072 414 0 0 0 chr1 63931391 63931437 -133263995 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1072 252 0 0 0 chr1 63931777 63931805 -133263627 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1072 306 0 0 0 chr1 63931805 63931838 -133263594 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1072 211 200 0 0 chr1 63932461 63932506 -133262926 + T-rich Low_complexity Low_complexity 3 47 0 6 1072 37228 65 1 25 chr1 63932783 63938874 -133256558 + L1Md_T LINE L1 99 5586 -297 6 1072 8138 58 0 0 chr1 63938874 63939907 -133255525 + L1Md_T LINE L1 5587 6582 0 6 1072 192 289 51 26 chr1 63940039 63940117 -133255315 + L2c LINE L2 3147 3226 -161 6 1072 3971 177 101 7 chr1 63940229 63941041 -133254391 + RMER19B LTR ERVK 3 890 -12 6 1072 520 288 155 8 chr1 63941195 63941447 -133253985 + RMER15 LTR ERVL 275 563 -12 6 1072 524 303 21 21 chr1 63942081 63942270 -133253162 + ORR1E LTR MaLR 2 190 -169 6 1072 356 191 12 0 chr1 63942278 63942362 -133253070 + (TATG)n Simple_repeat Simple_repeat 2 86 0 6 1072 514 212 18 0 chr1 63942552 63942665 -133252767 + ORR1E LTR MaLR 265 379 0 6 1072 909 28 0 0 chr1 63943152 63943260 -133252172 + (TC)n Simple_repeat Simple_repeat 2 109 0 6 1072 553 280 39 0 chr1 63943377 63943559 -133251873 + LTR37A LTR ERV1 220 408 -18 6 1072 408 325 72 0 chr1 63943934 63944100 -133251332 - MER5B DNA MER1_type 0 178 1 6 1072 219 365 64 18 chr1 63944332 63944441 -133250991 - L2b LINE L2 -1 3374 3261 6 1072 212 182 55 0 chr1 63944516 63944571 -133250861 + BC1_Mm scRNA scRNA 49 106 -46 6 1072 350 237 35 29 chr1 63944620 63944855 -133250577 + (TTATA)n Simple_repeat Simple_repeat 1 236 0 6 1072 989 246 5 10 chr1 63944860 63945053 -133250379 + B4 SINE B4 91 282 -10 6 1072 984 290 49 43 chr1 63945205 63945564 -133249868 - MLT1A0 LTR MaLR -4 370 6 6 1072 277 330 117 37 chr1 63946412 63946626 -133248806 - MIRc SINE MIR -36 232 2 6 1072 182 62 31 0 chr1 63947251 63947283 -133248149 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 6 1072 371 303 39 83 chr1 63947501 63947698 -133247734 - LTR16B2 LTR ERVL 0 462 275 6 1072 1886 205 45 45 chr1 63947698 63947776 -133247656 + MTD LTR MaLR 1 72 -347 6 1072 2720 156 5 21 chr1 63947776 63948201 -133247231 + MTC LTR MaLR 1 418 -3 6 1072 1886 205 45 45 chr1 63948201 63948541 -133246891 + MTD LTR MaLR 73 419 0 6 1072 26 0 0 0 chr1 63949405 63949431 -133246001 + AT_rich Low_complexity Low_complexity 1 26 0 6 1072 23 0 0 0 chr1 63950799 63950822 -133244610 + AT_rich Low_complexity Low_complexity 1 23 0 6 1072 21 0 0 0 chr1 63951001 63951022 -133244410 + AT_rich Low_complexity Low_complexity 1 21 0 6 1072 805 245 35 57 chr1 63952131 63952360 -133243072 + B4A SINE B4 2 225 -67 6 1072 2927 188 56 34 chr1 63952363 63953019 -133242413 + Lx9 LINE L1 6968 7638 -6 6 1072 271 303 0 0 chr1 63953021 63953097 -133242335 + B4A SINE B4 217 292 0 6 1072 211 209 0 0 chr1 63953099 63953142 -133242290 + (CATA)n Simple_repeat Simple_repeat 3 45 0 6 1072 869 73 36 12 chr1 63953179 63953345 -133242087 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 6 1072 1419 246 47 14 chr1 63953541 63953900 -133241532 + MTEb LTR MaLR 1 371 -8 6 1072 377 286 38 9 chr1 63954313 63954419 -133241013 + PB1D10 SINE Alu 5 113 -4 6 1072 2540 308 107 18 chr1 63954456 63955536 -133239896 - Lx8 LINE L1 -29 7444 6268 6 1072 261 0 0 0 chr1 63955592 63955621 -133239811 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1072 315 0 0 0 chr1 63955758 63955793 -133239639 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1072 346 322 35 0 chr1 63955832 63955975 -133239457 + L1M5 LINE L1 5579 5726 -398 6 1072 23 54 0 0 chr1 63956328 63956365 -133239067 + AT_rich Low_complexity Low_complexity 1 37 0 6 1072 2103 172 65 23 chr1 63956931 63957330 -133238102 + MTD LTR MaLR 4 419 0 6 1072 255 282 152 51 chr1 63957374 63957512 -133237920 + MER2 DNA MER2_type 137 288 -57 6 1072 345 82 0 0 chr1 63958365 63958414 -133237018 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1072 2491 92 3 38 chr1 63958697 63958723 -133236709 - L1_Mus2 LINE L1 0 6566 6545 6 1072 206 32 0 31 chr1 63958723 63958755 -133236677 + (CATTA)n Simple_repeat Simple_repeat 3 33 0 6 1072 2491 92 3 38 chr1 63958755 63959101 -133236331 - L1_Mus2 LINE L1 -22 6544 6207 6 1072 282 313 32 142 chr1 63959119 63959200 -133236232 + B4 SINE B4 58 225 -66 6 1072 555 241 0 0 chr1 63959200 63959308 -133236124 + B1_Mur4 SINE Alu 42 149 -1 6 1072 352 283 37 9 chr1 63959462 63959569 -133235863 - MIR SINE MIR -44 218 109 6 1072 231 372 85 0 chr1 63959865 63959994 -133235438 + MIRb SINE MIR 68 207 -61 6 1072 3520 262 112 22 chr1 63960089 63961449 -133233983 + L1MC1 LINE L1 3467 4948 -1198 6 1072 860 271 40 73 chr1 63961486 63961762 -133233670 + B4 SINE B4 1 278 -14 6 1072 2007 117 8 140 chr1 63961762 63962141 -133233291 - ORR1A4 LTR MaLR 0 329 1 6 1072 860 271 40 73 chr1 63962141 63962166 -133233266 + B4 SINE B4 279 292 0 6 1072 378 91 0 0 chr1 63962192 63962247 -133233185 + (CATA)n Simple_repeat Simple_repeat 4 58 0 6 1072 2099 267 81 22 chr1 63962257 63963070 -133232362 + L1MC1 LINE L1 5006 5867 -466 6 16 1031 179 328 24 chr1 63963070 63963357 -133232075 + ORR1D1 LTR MaLR 1 374 0 6 1073 2099 280 95 20 chr1 63963357 63963647 -133231785 + L1MC1 LINE L1 5868 6186 -147 6 1073 361 305 69 28 chr1 63963746 63963891 -133231541 + MIR SINE MIR 110 260 -2 6 1073 327 385 53 5 chr1 63963911 63964099 -133231333 - MIRb SINE MIR -54 214 18 6 1073 347 0 23 0 chr1 63964135 63964178 -133231254 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1073 652 300 0 7 chr1 63964180 63964331 -133231101 - B3A SINE B2 -47 151 2 6 1073 1127 273 83 51 chr1 63965336 63965687 -133229745 + MTE2b LTR MaLR 1 362 -17 6 1073 555 117 29 0 chr1 63965773 63965876 -133229556 + (TCC)n Simple_repeat Simple_repeat 1 106 0 6 1073 23 0 0 0 chr1 63966099 63966122 -133229310 + AT_rich Low_complexity Low_complexity 1 23 0 6 1073 272 306 72 63 chr1 63966457 63966684 -133228748 - MLT1A1 LTR MaLR 0 408 145 6 1073 335 181 14 0 chr1 63967642 63967714 -133227718 + CT-rich Low_complexity Low_complexity 1 73 0 6 1073 471 298 0 0 chr1 63967780 63967884 -133227548 - RSINE1 SINE B4 -59 106 3 6 1073 423 0 0 0 chr1 63968086 63968133 -133227299 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1073 257 364 0 27 chr1 63968195 63968305 -133227127 - MER5B DNA MER1_type 0 178 72 6 1073 220 139 0 44 chr1 63968417 63968462 -133226970 - ID4 SINE ID -39 44 2 6 1073 616 259 12 48 chr1 63968524 63968690 -133226742 + MER5A DNA MER1_type 6 165 -24 6 1073 285 253 66 44 chr1 63970075 63970166 -133225266 - B1F2 SINE Alu -54 95 3 6 1073 252 298 124 31 chr1 63971258 63971355 -133224077 + MER5A DNA MER1_type 21 126 -63 6 1073 506 263 102 29 chr1 63971380 63971517 -133223915 - B1F SINE Alu 0 149 3 6 1073 196 327 18 0 chr1 63971521 63971576 -133223856 + MER5A DNA MER1_type 133 188 -1 6 1073 215 146 20 40 chr1 63972546 63972596 -133222836 + A-rich Low_complexity Low_complexity 4 52 0 6 1073 399 41 0 0 chr1 63972884 63972933 -133222499 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1073 233 29 29 0 chr1 63972936 63972970 -133222462 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1073 816 65 0 0 chr1 63973184 63973291 -133222141 + (CCA)n Simple_repeat Simple_repeat 1 107 0 6 1073 272 100 0 0 chr1 63973491 63973531 -133221901 - MTC LTR MaLR 0 421 382 6 1073 637 282 78 67 chr1 63973537 63973981 -133221451 + RLTR12B LTR ERVK 11 335 -193 6 1073 2021 161 25 47 chr1 63973996 63974153 -133221279 - MTC LTR MaLR -26 395 240 6 1073 197 108 0 26 chr1 63974153 63974191 -133221241 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 6 1073 2021 161 25 47 chr1 63974191 63974203 -133221229 - MTC LTR MaLR -182 239 224 6 1073 1326 70 81 0 chr1 63974203 63974375 -133221057 - B2_Mm2 SINE B2 -9 186 1 6 1073 2021 161 25 47 chr1 63974375 63974608 -133220824 - MTC LTR MaLR -198 223 2 6 1073 1238 65 6 0 chr1 63975310 63975479 -133219953 + (GAAA)n Simple_repeat Simple_repeat 4 173 0 6 1073 926 265 108 114 chr1 63976300 63976985 -133218447 - L1MB2 LINE L1 -3 6168 5488 6 1073 181 345 0 0 chr1 63977319 63977374 -133218058 - MIRc SINE MIR -33 235 181 6 1073 233 137 39 0 chr1 63978205 63978256 -133217176 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 6 1073 653 157 9 36 chr1 63978624 63978736 -133216696 + B1_Mur1 SINE Alu 41 149 0 6 1073 734 143 0 51 chr1 63979618 63979861 -133215571 + (TG)n Simple_repeat Simple_repeat 1 230 0 7 1073 189 107 0 0 chr1 63981372 63981400 -133214032 + (TTC)n Simple_repeat Simple_repeat 2 29 0 7 1073 307 242 0 15 chr1 63982922 63982989 -133212443 - MLT1H2 LTR MaLR -308 181 116 7 1073 2079 201 51 8 chr1 63982989 63983380 -133212052 + MTD LTR MaLR 1 408 -11 7 1073 615 268 150 57 chr1 63984922 63985255 -133210177 - LTR40c LTR ERVL -14 451 88 7 1073 3552 294 58 95 chr1 63985867 63987309 -133208123 - Lx8 LINE L1 -59 7414 6021 7 1073 946 79 167 0 chr1 63987309 63987435 -133207997 - B1_Mm SINE Alu 0 147 1 7 1073 3552 277 73 35 chr1 63987435 63988476 -133206956 - Lx8 LINE L1 -1453 6020 4922 7 1073 2241 288 53 100 chr1 63988472 63988628 -133206804 - L1MDa LINE L1 -2390 4455 4320 7 1073 2720 133 36 15 chr1 63988628 63989040 -133206392 + MTC LTR MaLR 1 421 0 7 1073 2241 288 53 100 chr1 63989040 63990060 -133205372 - L1MDa LINE L1 -2526 4319 3305 7 1073 784 307 111 8 chr1 63990060 63990313 -133205119 + B4A SINE B4 1 279 -13 7 1073 2241 273 60 73 chr1 63990313 63990915 -133204517 - L1MDa LINE L1 -3541 3304 2756 7 1073 5156 92 10 105 chr1 63991688 63992582 -133202850 + RMER17D2 LTR ERVK 1 809 0 7 1073 270 116 0 0 chr1 63993171 63993214 -133202218 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1073 411 327 12 62 chr1 63994205 63994365 -133201067 - MER5A1 DNA MER1_type -13 153 2 7 1073 307 307 68 0 chr1 63994374 63994462 -133200970 - MER5A DNA MER1_type 0 189 96 7 1073 1119 116 0 0 chr1 63994651 63994798 -133200634 + B1_Mus1 SINE Alu 2 148 0 7 1073 618 91 8 40 chr1 63994805 63994931 -133200501 + (GAGAA)n Simple_repeat Simple_repeat 4 125 0 7 1073 622 137 27 7 chr1 63995154 63995301 -133200131 + (TA)n Simple_repeat Simple_repeat 2 151 0 7 1073 3165 99 11 11 chr1 63996107 63996544 -133198888 + L1_Mus4 LINE L1 6190 6626 -10 7 1073 464 300 106 7 chr1 63996640 63996781 -133198651 - RSINE1 SINE B4 -10 155 1 7 1073 306 0 0 0 chr1 63998196 63998230 -133197202 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1073 261 0 0 0 chr1 63998230 63998258 -133197174 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1073 643 299 20 14 chr1 63999162 63999308 -133196124 - RSINE1 SINE B4 -16 149 3 7 1073 23 0 0 0 chr1 64000438 64000461 -133194971 + GC_rich Low_complexity Low_complexity 1 23 0 1 1073 2431 57 0 3 chr1 64001200 64001502 -133193930 - L1_Mus2 LINE L1 -1 6565 6265 2 1073 481 331 42 11 chr1 64001759 64001948 -133193484 - B4A SINE B4 -8 284 90 3 1073 202 242 0 32 chr1 64003647 64003741 -133191691 + (CATA)n Simple_repeat Simple_repeat 4 94 0 4 1073 221 290 20 4 chr1 64003765 64004025 -133191407 + (CA)n Simple_repeat Simple_repeat 1 264 0 5 1073 478 221 73 33 chr1 64004087 64004108 -133191324 + ID_B1 SINE B4 68 223 -1 6 1073 904 62 8 0 chr1 64004108 64004237 -133191195 + B1_Mus2 SINE Alu 18 147 0 7 1073 186 71 0 0 chr1 64004240 64004268 -133191164 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 8 1073 680 111 0 9 chr1 64004468 64004577 -133190855 + (TCCC)n Simple_repeat Simple_repeat 4 111 0 9 1073 442 298 18 0 chr1 64004580 64004694 -133190738 - PB1D10 SINE Alu -1 116 1 1 1073 218 373 0 0 chr1 64004634 64004709 -133190723 - B4A SINE B4 -147 145 71 1 1073 1346 77 21 27 chr1 64004779 64004967 -133190465 + B2_Mm1t SINE B2 1 187 -6 1 1073 1869 68 1 3 chr1 64005595 64005839 -133189593 + L1Md_F3 LINE L1 5372 5615 -568 1 1073 8336 41 5 1 chr1 64005839 64006833 -133188599 + L1Md_F3 LINE L1 5587 6584 0 1 1073 267 103 0 0 chr1 64007129 64007168 -133188264 + (TCTCC)n Simple_repeat Simple_repeat 2 40 0 1 1073 868 159 6 6 chr1 64007172 64007349 -133188083 + CT-rich Low_complexity Low_complexity 4 180 0 1 1073 1995 293 92 17 chr1 64007538 64008170 -133187262 - Lx8 LINE L1 -352 7121 6443 1 1073 32 0 0 0 chr1 64010017 64010049 -133185383 + AT_rich Low_complexity Low_complexity 1 32 0 1 1073 2132 126 126 0 chr1 64010153 64010503 -133184929 - ORR1B1 LTR MaLR 0 394 1 1 1073 231 284 36 36 chr1 64010600 64010684 -133184748 + MLT1K LTR MaLR 1 84 -511 1 1073 205 298 0 0 chr1 64010881 64010928 -133184504 + C-rich Low_complexity Low_complexity 3 49 0 2 1073 315 0 0 0 chr1 64011662 64011697 -133183735 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1073 192 77 0 0 chr1 64011708 64011734 -133183698 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1073 279 51 0 92 chr1 64011767 64011832 -133183600 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 2 1073 405 0 0 0 chr1 64011834 64011879 -133183553 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1073 28 29 0 0 chr1 64012169 64012204 -133183228 + AT_rich Low_complexity Low_complexity 1 35 0 2 1073 408 88 0 0 chr1 64012951 64013008 -133182424 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1073 258 303 27 116 chr1 64013235 64013347 -133182085 + PB1D9 SINE Alu 1 102 -18 2 1073 525 144 0 0 chr1 64013347 64013451 -133181981 + (GA)n Simple_repeat Simple_repeat 2 105 0 2 1073 246 355 37 0 chr1 64014040 64014147 -133181285 - MIRb SINE MIR -75 193 83 2 1073 249 304 25 0 chr1 64014803 64014882 -133180550 + MIR3 SINE MIR 112 192 -16 3 1073 444 354 14 14 chr1 64015383 64015592 -133179840 + MIR SINE MIR 53 261 -1 3 1073 992 94 24 53 chr1 64016399 64016568 -133178864 + B2_Mm2 SINE B2 2 165 -30 3 1073 240 341 79 28 chr1 64017191 64017405 -133178027 + L1ME3A LINE L1 5945 6169 -4 3 1073 527 132 11 0 chr1 64017435 64017526 -133177906 + (GGAA)n Simple_repeat Simple_repeat 2 93 0 3 1073 232 340 0 10 chr1 64018298 64018399 -133177033 + L1MA5 LINE L1 5894 5993 -298 3 1073 341 228 136 14 chr1 64018504 64018651 -133176781 + L1MA5 LINE L1 6135 6299 -1 3 1073 338 352 62 44 chr1 64018657 64019272 -133176160 + L1MEf LINE L1 1326 1951 -4291 3 1073 283 224 29 29 chr1 64019409 64019478 -133175954 - Lx7 LINE L1 -1787 5909 5841 3 1073 243 250 39 13 chr1 64019667 64019744 -133175688 + MER5A DNA MER1_type 63 141 -48 3 1073 446 278 165 40 chr1 64019919 64020373 -133175059 + L1MEf LINE L1 3721 4231 -1915 3 1073 22 0 0 0 chr1 64021142 64021164 -133174268 + AT_rich Low_complexity Low_complexity 1 22 0 3 1073 183 80 0 0 chr1 64022191 64022216 -133173216 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1073 242 272 13 20 chr1 64023194 64023273 -133172159 + MIRb SINE MIR 11 83 -193 4 1073 342 0 0 0 chr1 64024685 64024723 -133170709 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1073 308 304 17 17 chr1 64025604 64025721 -133169711 + PB1D7 SINE Alu 3 119 -1 4 1073 884 155 0 6 chr1 64027848 64028010 -133167422 + GA-rich Low_complexity Low_complexity 3 163 0 4 1073 188 175 50 0 chr1 64028359 64028399 -133167033 - MIRm SINE MIR -15 261 220 4 1073 223 367 0 0 chr1 64028456 64028535 -133166897 - L2b LINE L2 -5 3370 3292 4 1073 227 327 135 9 chr1 64029125 64029236 -133166196 - MLT1A1 LTR MaLR -279 129 5 4 1073 234 0 0 0 chr1 64029260 64029286 -133166146 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1073 357 141 86 11 chr1 64030358 64030451 -133164981 - Lx9 LINE L1 -5 7639 7540 4 1073 222 128 0 0 chr1 64030451 64030490 -133164942 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1073 3285 242 28 59 chr1 64030494 64031066 -133164366 - Lx9 LINE L1 -189 7455 6909 4 1073 1117 89 118 6 chr1 64031066 64031236 -133164196 + B2_Mm2 SINE B2 1 189 -6 5 1073 3285 242 28 59 chr1 64031236 64031636 -133163796 - Lx9 LINE L1 -736 6908 6513 4 1073 634 213 39 49 chr1 64031636 64031852 -133163580 + Lx9 LINE L1 5842 6048 -1596 5 1073 430 285 67 21 chr1 64031877 64032142 -133163290 + Lx9 LINE L1 6157 6470 -1174 5 1073 298 315 112 85 chr1 64032407 64032854 -133162578 + L1M5 LINE L1 5255 5713 -481 5 1073 615 27 0 0 chr1 64033033 64033106 -133162326 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 1073 198 206 0 0 chr1 64033109 64033177 -133162255 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1073 579 196 0 0 chr1 64033188 64033341 -133162091 + (TG)n Simple_repeat Simple_repeat 1 153 0 5 1073 632 248 147 16 chr1 64033341 64033599 -133161833 - B4A SINE B4 0 292 1 5 1073 534 297 75 116 chr1 64033770 64034090 -133161342 + ORR1E LTR MaLR 53 359 0 5 1073 990 72 18 18 chr1 64034863 64035032 -133160400 + (TCTCC)n Simple_repeat Simple_repeat 1 169 0 5 1073 207 159 45 0 chr1 64036218 64036262 -133159170 + T-rich Low_complexity Low_complexity 4 49 0 5 1073 246 190 75 12 chr1 64036269 64036349 -133159083 - Lx5 LINE L1 0 7050 6966 6 1073 256 193 0 0 chr1 64036351 64036400 -133159032 + Lx5 LINE L1 6845 6916 -142 6 1073 261 0 0 0 chr1 64036409 64036438 -133158994 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1073 282 286 54 11 chr1 64036529 64036621 -133158811 + MLT1C LTR MaLR 1 96 -371 6 1073 918 159 0 0 chr1 64036635 64036780 -133158652 - B1_Mus2 SINE Alu -1 146 2 6 1073 633 324 76 71 chr1 64036781 64036874 -133158558 + MLT1C LTR MaLR 79 184 -283 6 1073 297 291 13 0 chr1 64036874 64036953 -133158479 + ID4_ SINE ID 3 82 -1 6 1073 633 324 76 71 chr1 64036953 64037241 -133158191 + MLT1C LTR MaLR 185 462 -5 6 1073 682 338 3 55 chr1 64038280 64038587 -133156845 - B4A SINE B4 0 292 2 6 1073 180 0 0 0 chr1 64038757 64038777 -133156655 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1073 882 287 81 57 chr1 64039164 64039534 -133155898 - MTEb LTR MaLR 0 379 1 6 1073 240 316 22 33 chr1 64039662 64039795 -133155637 - MIR SINE MIR -82 186 52 6 1073 188 135 0 26 chr1 64040837 64040875 -133154557 + GA-rich Low_complexity Low_complexity 2 38 0 6 1073 252 0 0 0 chr1 64041734 64041762 -133153670 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1073 221 167 0 0 chr1 64042760 64042802 -133152630 + (CAAAT)n Simple_repeat Simple_repeat 2 43 0 7 1073 925 280 114 6 chr1 64043612 64043790 -133151642 + MER44B DNA MER2_type 7 219 -331 7 1073 435 19 0 0 chr1 64043790 64043842 -133151590 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1073 925 273 57 62 chr1 64043842 64044111 -133151321 + MER44B DNA MER2_type 220 470 -80 7 1073 246 226 0 31 chr1 64044111 64044175 -133151257 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1073 330 209 7 36 chr1 64044445 64044584 -133150848 + GA-rich Low_complexity Low_complexity 4 138 0 7 1073 203 263 18 0 chr1 64044744 64044801 -133150631 + GA-rich Low_complexity Low_complexity 2 59 0 7 1073 527 258 135 43 chr1 64046605 64046923 -133148509 + ORR1E LTR MaLR 1 378 -1 7 1073 360 306 62 6 chr1 64047380 64047541 -133147891 + LTR33A LTR ERVL 268 437 -83 7 1073 257 296 12 0 chr1 64048034 64048115 -133147317 - MIR SINE MIR -113 149 68 7 1073 1267 216 142 16 chr1 64048172 64048539 -133146893 - MTD LTR MaLR -14 405 1 8 1073 405 0 0 0 chr1 64049752 64049797 -133145635 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1073 390 154 0 0 chr1 64051581 64051659 -133143773 + (CA)n Simple_repeat Simple_repeat 1 78 0 8 1073 185 0 0 39 chr1 64051846 64051872 -133143560 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 8 1073 387 329 74 13 chr1 64052579 64052810 -133142622 + MLT1J1 LTR MaLR 45 289 -155 8 1073 247 336 73 32 chr1 64054204 64054450 -133140982 - MamRep4096 DNA hAT? -15 411 156 8 1073 201 39 0 0 chr1 64055026 64055052 -133140380 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1073 270 0 0 0 chr1 64055623 64055653 -133139779 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1073 789 147 88 0 chr1 64056808 64056944 -133138488 - B1_Mur4 SINE Alu 0 150 3 8 1073 230 196 16 82 chr1 64056975 64056988 -133138444 - B4 SINE B4 -148 144 135 8 1073 5669 76 9 25 chr1 64056988 64057761 -133137671 - L1Md_F2 LINE L1 0 6582 5822 9 1073 230 196 16 82 chr1 64057761 64057808 -133137624 - B4 SINE B4 -158 134 88 8 1073 343 186 0 41 chr1 64058468 64058541 -133136891 + RMER13A LTR ERVK 146 215 -645 9 1073 3052 178 86 112 chr1 64058570 64059457 -133135975 - RMER13B LTR ERVK -40 868 5 9 1073 279 198 66 18 chr1 64059526 64059629 -133135803 + MTEb LTR MaLR 212 333 -46 9 1073 303 28 0 0 chr1 64060276 64060312 -133135120 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1073 447 19 0 0 chr1 64060316 64060368 -133135064 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1073 369 0 0 0 chr1 64060658 64060699 -133134733 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1073 386 269 51 28 chr1 64061176 64061352 -133134080 - MER3 DNA MER1_type -22 187 8 9 1073 2258 104 84 25 chr1 64061356 64061776 -133133656 + RMER16 LTR ERVK 1 533 0 9 1073 344 301 120 26 chr1 64061962 64062153 -133133279 - MIRc SINE MIR -38 230 22 9 1073 189 306 0 0 chr1 64062714 64062763 -133132669 + L2a LINE L2 3105 3153 -273 1 1073 245 352 0 0 chr1 64063298 64063369 -133132063 + B4 SINE B4 3 73 -219 1 1073 555 208 0 0 chr1 64063396 64063516 -133131916 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 1073 312 27 0 0 chr1 64063516 64063553 -133131879 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1073 647 271 101 69 chr1 64064815 64065092 -133130340 + B4A SINE B4 7 292 0 1 1073 317 329 0 0 chr1 64066898 64066980 -133128452 + G-rich Low_complexity Low_complexity 2 83 0 1 1073 225 174 0 0 chr1 64067824 64067870 -133127562 + G-rich Low_complexity Low_complexity 1 46 0 1 1073 257 298 71 0 chr1 64068855 64068939 -133126493 + RSINE1 SINE B4 16 105 -60 1 1073 438 20 0 0 chr1 64068945 64068996 -133126436 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1073 1410 210 20 97 chr1 64069580 64069981 -133125451 - RMER10B LTR ERVL -11 387 18 1 1073 723 70 0 10 chr1 64072214 64072315 -133123117 + B1_Mur4 SINE Alu 50 149 -1 1 1073 336 204 39 80 chr1 64072873 64073020 -133122412 - L1MA8 LINE L1 -69 6243 6104 1 1073 552 252 36 7 chr1 64073059 64073199 -133122233 + B3A SINE B2 39 182 -16 1 1073 508 238 209 0 chr1 64073240 64073450 -133121982 - L1MA8 LINE L1 -142 6149 5896 1 1073 183 80 0 0 chr1 64074059 64074084 -133121348 + (TTTTTA)n Simple_repeat Simple_repeat 5 29 0 1 1073 201 39 0 0 chr1 64074169 64074195 -133121237 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1073 594 208 61 8 chr1 64074299 64074430 -133121002 + RSINE1 SINE B4 3 140 -25 1 1073 31 44 0 0 chr1 64076269 64076314 -133119118 + AT_rich Low_complexity Low_complexity 1 45 0 1 1073 32 0 0 0 chr1 64078293 64078325 -133117107 + AT_rich Low_complexity Low_complexity 1 32 0 1 1073 252 143 0 0 chr1 64079407 64079449 -133115983 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1073 219 69 0 0 chr1 64079975 64080004 -133115428 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1073 22 35 0 0 chr1 64080279 64080308 -133115124 + AT_rich Low_complexity Low_complexity 1 29 0 1 1073 268 270 0 0 chr1 64082017 64082091 -133113341 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1073 292 131 14 14 chr1 64082218 64082288 -133113144 + T-rich Low_complexity Low_complexity 3 72 0 1 1073 180 0 0 0 chr1 64082920 64082940 -133112492 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 1 1073 423 313 36 24 chr1 64083185 64083352 -133112080 + MLT1K LTR MaLR 194 362 -233 1 1073 1174 48 7 7 chr1 64083938 64084085 -133111347 + B1_Mus1 SINE Alu 2 148 0 1 1073 858 91 0 0 chr1 64084094 64084215 -133111217 + (GGAGA)n Simple_repeat Simple_repeat 3 123 0 1 1073 242 254 28 14 chr1 64084515 64084587 -133110845 - MLT1D LTR MaLR -175 330 258 1 1073 1056 160 120 0 chr1 64084687 64084887 -133110545 + URR1B DNA MER1_type 1 224 -1 1 1073 22 35 0 0 chr1 64085518 64085547 -133109885 + AT_rich Low_complexity Low_complexity 1 29 0 1 1073 257 340 94 6 chr1 64086335 64086495 -133108937 - MER102c DNA MER1_type -72 259 86 1 1073 348 24 0 0 chr1 64089151 64089192 -133106240 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1073 234 300 69 86 chr1 64090088 64090263 -133105169 + MIR SINE MIR 81 252 -10 1 1073 1090 266 17 31 chr1 64090281 64090572 -133104860 + B4A SINE B4 2 288 -4 1 1073 202 320 0 26 chr1 64090574 64090651 -133104781 + (CATA)n Simple_repeat Simple_repeat 3 77 0 1 1073 207 182 0 0 chr1 64090651 64090684 -133104748 + polypyrimidine Low_complexity Low_complexity 1 33 0 1 1073 243 88 0 0 chr1 64091737 64091771 -133103661 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1073 296 346 3 25 chr1 64092374 64092579 -133102853 + GA-rich Low_complexity Low_complexity 1 200 0 1 1073 314 284 49 39 chr1 64093224 64093429 -133102003 - Charlie7a DNA MER1_type -19 253 47 1 1073 1058 281 22 7 chr1 64093742 64094014 -133101418 + B4A SINE B4 17 292 0 1 1073 369 0 0 0 chr1 64094021 64094062 -133101370 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 134 331 278 103 67 chr1 64094158 64094382 -133101050 + L2 LINE L2 2851 3082 -337 1 1074 354 266 9 35 chr1 64094459 64094572 -133100860 + PB1D10 SINE Alu 6 115 -2 1 1074 183 80 0 0 chr1 64094832 64094857 -133100575 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1074 315 301 60 30 chr1 64096396 64096595 -133098837 + Charlie5 DNA MER1_type 2352 2556 -68 1 1074 305 82 20 0 chr1 64097468 64097517 -133097915 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1074 258 116 0 0 chr1 64097523 64097566 -133097866 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1074 201 309 164 0 chr1 64097820 64097930 -133097502 - MER5A DNA MER1_type -22 167 40 1 1074 429 266 25 126 chr1 64098044 64098242 -133097190 + B4 SINE B4 2 179 -113 1 1074 270 211 35 0 chr1 64099037 64099094 -133096338 + ID_B1 SINE B4 130 188 -36 1 1074 1095 103 0 7 chr1 64099926 64100072 -133095360 + B1_Mus2 SINE Alu 1 145 -2 1 1074 22 0 0 0 chr1 64100082 64100104 -133095328 + AT_rich Low_complexity Low_complexity 1 22 0 1 1074 298 298 41 31 chr1 64103333 64103430 -133092002 + PB1D7 SINE Alu 15 112 -8 1 1074 205 265 0 0 chr1 64103436 64103485 -133091947 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 1 1074 333 0 0 0 chr1 64103688 64103725 -133091707 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1074 224 314 127 13 chr1 64104006 64104164 -133091268 + MIRc SINE MIR 48 223 -45 1 1074 2541 164 123 21 chr1 64105424 64105946 -133089486 + RMER15 LTR ERVL 1 575 0 1 1074 424 223 86 115 chr1 64106037 64106306 -133089126 + MER33 DNA MER1_type 56 316 -8 1 1074 190 329 57 76 chr1 64106331 64106594 -133088838 - L2 LINE L2 -535 2884 2627 1 1074 254 224 206 0 chr1 64109597 64109704 -133085728 + MIRc SINE MIR 129 257 -11 1 1074 447 303 6 41 chr1 64110541 64110713 -133084719 - Tigger12A DNA MER2_type -565 226 61 1 1074 420 294 21 49 chr1 64111004 64111147 -133084285 - MER20 DNA MER1_type -51 168 30 1 1074 284 221 58 30 chr1 64115990 64116124 -133079308 + L1MA5 LINE L1 5875 6005 -286 1 1074 801 258 83 8 chr1 64116388 64116630 -133078802 + B4 SINE B4 17 276 -16 1 1074 228 273 18 18 chr1 64116601 64116657 -133078775 + RSINE1 SINE B4 102 157 -8 1 1074 981 295 67 20 chr1 64118054 64118400 -133077032 + MTEa LTR MaLR 2 363 -16 1 1074 291 358 67 22 chr1 64118895 64119118 -133076314 + MIRb SINE MIR 2 238 -30 1 1074 183 294 20 0 chr1 64119099 64119150 -133076282 + L2b LINE L2 3323 3374 -1 1 1074 309 217 0 0 chr1 64120455 64120538 -133074894 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1074 278 286 28 2 chr1 64121573 64121661 -133073771 + B4A SINE B4 10 99 -193 1 1074 2409 218 109 54 chr1 64121661 64122314 -133073118 + Lx6 LINE L1 6766 7454 -6 1 1074 287 222 12 0 chr1 64122314 64122395 -133073037 + (TAAA)n Simple_repeat Simple_repeat 1 82 0 1 1074 767 303 5 9 chr1 64122398 64122608 -133072824 + B4A SINE B4 83 291 -1 1 1074 323 318 103 6 chr1 64122870 64123044 -133072388 - MIR SINE MIR -70 192 2 1 1074 255 331 157 7 chr1 64123887 64124027 -133071405 - MIR3 SINE MIR -17 191 31 1 1074 657 215 13 40 chr1 64124122 64124272 -133071160 - B1_Mur1 SINE Alu -2 147 2 1 1074 433 240 0 0 chr1 64126658 64126754 -133068678 + B1_Mus2 SINE Alu 2 97 -50 1 1074 292 326 33 33 chr1 64128225 64128377 -133067055 - L1M4 LINE L1 -3280 2866 2715 1 1074 1663 287 135 35 chr1 64129210 64130282 -133065150 + L1MC4a LINE L1 6591 7769 -113 1 1074 237 241 0 0 chr1 64130799 64130857 -133064575 + RSINE1 SINE B4 5 62 -103 1 1074 459 0 0 0 chr1 64130873 64130924 -133064508 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1074 225 154 0 0 chr1 64131741 64131780 -133063652 + A-rich Low_complexity Low_complexity 1 39 0 1 1074 971 138 12 0 chr1 64134158 64134325 -133061107 - URR1A DNA MER1_type 0 226 58 1 1074 468 0 0 0 chr1 64135189 64135241 -133060191 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1074 28 0 0 0 chr1 64138617 64138645 -133056787 + AT_rich Low_complexity Low_complexity 1 28 0 1 1074 243 0 0 0 chr1 64139497 64139524 -133055908 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1074 32 0 0 0 chr1 64140289 64140321 -133055111 + AT_rich Low_complexity Low_complexity 1 32 0 1 1074 207 0 0 0 chr1 64140379 64140402 -133055030 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1074 697 272 6 0 chr1 64140424 64140586 -133054846 - RSINE1 SINE B4 0 165 3 1 1074 742 224 34 0 chr1 64140686 64140833 -133054599 + B3A SINE B2 1 152 -46 1 1074 234 0 0 0 chr1 64140837 64140863 -133054569 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1074 391 291 58 116 chr1 64140876 64141101 -133054331 + B3A SINE B2 4 215 -1 1 1074 23 0 0 0 chr1 64141104 64141127 -133054305 + AT_rich Low_complexity Low_complexity 1 23 0 1 1074 436 341 70 19 chr1 64141866 64142114 -133053318 - MER102c DNA MER1_type -13 318 80 1 1074 351 0 0 0 chr1 64144039 64144078 -133051354 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1074 283 335 84 47 chr1 64145899 64146112 -133049320 - MER2 DNA MER2_type -46 299 79 1 1074 198 380 63 0 chr1 64146505 64146584 -133048848 + L2b LINE L2 3251 3334 -41 1 1074 423 0 0 0 chr1 64147732 64147779 -133047653 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1074 478 206 39 0 chr1 64148187 64148289 -133047143 + L1MD1 LINE L1 6137 6242 0 1 1074 197 33 0 32 chr1 64149569 64149600 -133045832 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1074 385 290 24 83 chr1 64150111 64150280 -133045152 + RSINE1 SINE B4 1 159 -6 2 1074 34 24 0 0 chr1 64150280 64150321 -133045111 + AT_rich Low_complexity Low_complexity 1 41 0 2 1074 1821 251 70 12 chr1 64150352 64150840 -133044592 + Lx8 LINE L1 6408 6923 -550 2 1074 599 249 234 29 chr1 64150840 64151187 -133044245 + MTD LTR MaLR 2 419 0 2 1074 1244 257 70 9 chr1 64151187 64151529 -133043903 + Lx8 LINE L1 6923 7285 -188 2 1074 309 208 0 0 chr1 64153283 64153355 -133042077 + G-rich Low_complexity Low_complexity 2 73 0 2 1074 243 0 0 0 chr1 64153766 64153793 -133041639 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1074 252 0 0 0 chr1 64153867 64153895 -133041537 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1074 28 29 0 0 chr1 64154053 64154088 -133041344 + AT_rich Low_complexity Low_complexity 1 35 0 2 1074 1208 54 0 0 chr1 64155195 64155342 -133040090 + B1_Mus1 SINE Alu 2 148 0 2 1074 1003 142 189 0 chr1 64155735 64155925 -133039507 + URR1A DNA MER1_type 1 226 0 2 1074 1079 75 0 46 chr1 64156815 64156968 -133038464 + B1_Mus2 SINE Alu 2 147 0 2 1074 267 54 0 0 chr1 64156972 64157009 -133038423 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1074 270 336 45 32 chr1 64157142 64157296 -133038136 + MIRb SINE MIR 53 208 -60 2 1074 339 25 0 0 chr1 64158406 64158446 -133036986 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1074 203 325 77 31 chr1 64158937 64159067 -133036365 - MER5B DNA MER1_type 0 178 43 2 1074 1351 126 8 67 chr1 64159365 64159604 -133035828 + URR1B DNA MER1_type 1 225 0 2 1074 201 239 0 21 chr1 64159613 64159660 -133035772 + GA-rich Low_complexity Low_complexity 3 48 0 2 1074 225 0 0 0 chr1 64160730 64160755 -133034677 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1074 201 158 0 0 chr1 64160909 64160947 -133034485 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2 1074 205 125 24 24 chr1 64165291 64165332 -133030100 + GA-rich Low_complexity Low_complexity 3 43 0 2 1074 702 0 0 0 chr1 64166265 64166343 -133029089 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 1074 210 133 44 0 chr1 64167345 64167390 -133028042 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 1074 206 219 16 0 chr1 64167745 64167809 -133027623 + GA-rich Low_complexity Low_complexity 1 65 0 2 1074 301 366 0 0 chr1 64168058 64168181 -133027251 + C-rich Low_complexity Low_complexity 1 123 0 2 1074 23 54 0 0 chr1 64168920 64168957 -133026475 + GC_rich Low_complexity Low_complexity 1 37 0 2 1074 220 119 0 45 chr1 64170102 64170146 -133025286 - B1_Mm SINE Alu -24 123 82 2 1074 265 24 0 45 chr1 64170573 64170617 -133024815 + (CAA)n Simple_repeat Simple_repeat 2 43 0 2 1074 23 0 0 0 chr1 64170760 64170783 -133024649 + AT_rich Low_complexity Low_complexity 1 23 0 2 1074 345 47 0 0 chr1 64170884 64170927 -133024505 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1074 3276 241 120 17 chr1 64170933 64171910 -133023522 - Lx9 LINE L1 -171 7473 6397 2 1074 350 300 45 0 chr1 64172277 64172387 -133023045 + PB1D9 SINE Alu 2 116 -4 2 1074 23 33 0 0 chr1 64172470 64172500 -133022932 + AT_rich Low_complexity Low_complexity 1 30 0 2 1074 1027 216 25 0 chr1 64172506 64172705 -133022727 + B3 SINE B2 2 205 -11 2 1074 274 228 87 29 chr1 64172744 64172848 -133022584 + ORR1E LTR MaLR 7 116 -243 2 1074 230 275 86 14 chr1 64172856 64172926 -133022506 + ORR1E LTR MaLR 283 357 -2 2 1074 1179 235 53 26 chr1 64174753 64175055 -133020377 - ORR1D2 LTR MaLR 0 370 61 2 1074 1901 136 44 15 chr1 64175233 64175576 -133019856 - ORR1B1 LTR MaLR 0 394 42 2 1074 894 150 185 11 chr1 64176203 64176392 -133019040 - URR1A DNA MER1_type 0 226 5 2 1074 195 129 0 0 chr1 64177118 64177149 -133018283 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1074 767 309 21 17 chr1 64177786 64178076 -133017356 + B4A SINE B4 2 292 0 2 1074 201 262 16 32 chr1 64178096 64178159 -133017273 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 2 1074 34 89 0 0 chr1 64178161 64178251 -133017181 + AT_rich Low_complexity Low_complexity 1 90 0 2 1074 803 265 10 0 chr1 64178490 64178694 -133016738 + MER2 DNA MER2_type 93 298 -47 2 1074 618 243 21 0 chr1 64178764 64178904 -133016528 - B1F SINE Alu -2 147 5 2 1074 241 299 13 0 chr1 64178949 64179026 -133016406 - MTEa LTR MaLR -14 365 288 2 1074 261 0 0 0 chr1 64179916 64179945 -133015487 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1074 602 38 25 0 chr1 64180606 64180686 -133014746 + (CCCTAA)n Simple_repeat Simple_repeat 1 82 0 2 1074 410 273 99 35 chr1 64180708 64180909 -133014523 - ID_B1 SINE B4 -6 218 5 2 1074 471 111 0 40 chr1 64181229 64181304 -133014128 - L1_Mur2 LINE L1 -1105 4772 4701 2 1074 7090 93 18 15 chr1 64181304 64182311 -133013121 + Lx LINE L1 5645 6654 0 2 1074 666 236 35 50 chr1 64182745 64182946 -133012486 - B3A SINE B2 0 198 1 2 1074 246 247 26 13 chr1 64183055 64183133 -133012299 - PB1D7 SINE Alu -7 113 35 2 1074 279 140 0 0 chr1 64183177 64183227 -133012205 + (CTG)n Simple_repeat Simple_repeat 1 50 0 2 1074 688 294 36 18 chr1 64183229 64183454 -133011978 + B4A SINE B4 2 230 -62 2 1074 450 237 184 0 chr1 64183459 64183573 -133011859 + RSINE1 SINE B4 2 136 -29 2 1074 262 243 0 41 chr1 64183592 64183665 -133011767 + B4A SINE B4 217 286 -6 2 1074 378 0 0 0 chr1 64183748 64183790 -133011642 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1074 533 223 16 8 chr1 64185554 64185676 -133009756 + RMER17C LTR ERVK 1 123 -287 2 1074 1059 36 0 0 chr1 64185665 64185802 -133009630 - B1_Mus2 SINE Alu 0 147 11 2 1074 503 211 38 96 chr1 64185802 64185820 -133009612 - B4 SINE B4 -66 224 79 2 1074 2167 154 19 19 chr1 64186527 64186938 -133008494 + MTC LTR MaLR 3 413 -8 2 1074 893 321 77 40 chr1 64187384 64187904 -133007528 - MLT1F LTR MaLR -5 543 5 2 1074 339 25 0 0 chr1 64188482 64188522 -133006910 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1074 306 0 0 0 chr1 64188522 64188555 -133006877 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1074 579 312 56 8 chr1 64188660 64188912 -133006520 - B4A SINE B4 -20 272 9 2 1074 253 284 11 54 chr1 64189757 64189850 -133005582 - AmnSINE1 SINE SINE -73 502 414 2 1074 562 244 67 63 chr1 64189976 64190199 -133005233 + MLT1B LTR MaLR 3 226 -164 2 1074 203 167 0 0 chr1 64190199 64190241 -133005191 + GA-rich Low_complexity Low_complexity 2 43 0 2 1074 387 312 36 15 chr1 64190241 64190436 -133004996 + MLT1B LTR MaLR 185 383 -7 2 1074 423 0 0 0 chr1 64191729 64191776 -133003656 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1074 225 222 0 16 chr1 64191896 64191960 -133003472 + HAL1b LINE L1 1691 1753 -256 2 1074 262 261 74 83 chr1 64192551 64192672 -133002760 - MIR3 SINE MIR -1 207 88 2 1074 924 245 19 24 chr1 64193436 64193645 -133001787 - B3 SINE B2 -8 208 1 2 1074 2113 146 38 0 chr1 64194225 64194540 -133000892 + ORR1A2 LTR MaLR 1 327 0 2 1074 1130 139 165 0 chr1 64195516 64195710 -132999722 - URR1A DNA MER1_type 0 226 1 2 1074 870 216 21 40 chr1 64196518 64196762 -132998670 + ORR1B1 LTR MaLR 41 262 -112 2 1074 1020 97 115 0 chr1 64197429 64197594 -132997838 + ORR1B1 LTR MaLR 211 394 0 2 1074 3590 23 0 0 chr1 64197870 64198266 -132997166 - MTA_Mm LTR MaLR 0 396 1 2 1074 9100 39 5 5 chr1 64198266 64199364 -132996068 - MTA_Mm-int LTR MaLR 0 1098 1 2 1074 3617 18 0 0 chr1 64199364 64199760 -132995672 - MTA_Mm LTR MaLR 0 396 1 2 1074 350 179 36 43 chr1 64201540 64201680 -132993752 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 1074 816 279 85 19 chr1 64201898 64202216 -132993216 + MER44A DNA MER2_type 1 339 0 2 1074 342 0 0 0 chr1 64202321 64202359 -132993073 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1074 346 98 0 0 chr1 64202359 64202420 -132993012 - B1_Mur4 SINE Alu 0 150 90 2 1074 419 332 56 9 chr1 64203933 64204146 -132991286 - MIRb SINE MIR -35 233 11 2 1074 22 0 0 0 chr1 64204992 64205014 -132990418 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 17804 63 2 2 chr1 64205900 64208853 -132986579 - L1Md_F2 LINE L1 0 6582 3631 2 1074 4566 34 21 16 chr1 64209232 64209859 -132985573 + MT-int LTR MaLR 396 1025 -73 2 1074 257 68 0 22 chr1 64210507 64210552 -132984880 + (CTAA)n Simple_repeat Simple_repeat 1 44 0 2 1074 201 316 18 0 chr1 64212164 64212221 -132983211 + MIRb SINE MIR 46 103 -165 2 1074 933 289 85 10 chr1 64212997 64213304 -132982128 - ORR1D2 LTR MaLR -40 330 1 2 1074 4075 52 0 0 chr1 64213622 64214106 -132981326 + L1_Mus1 LINE L1 6081 6564 -3 2 1074 205 167 33 16 chr1 64214507 64214568 -132980864 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 2 1074 195 42 0 0 chr1 64214815 64214839 -132980593 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1074 357 24 0 0 chr1 64215299 64215341 -132980091 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1074 565 309 45 87 chr1 64215605 64215907 -132979525 - MT2A LTR ERVL 0 533 247 2 1074 1047 84 6 27 chr1 64215907 64216090 -132979342 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1074 565 309 45 87 chr1 64216090 64216212 -132979220 - MT2A LTR ERVL -287 246 127 2 1074 279 0 0 0 chr1 64216257 64216288 -132979144 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1074 204 111 0 0 chr1 64216298 64216334 -132979098 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1074 1518 6 0 0 chr1 64216336 64216507 -132978925 + (GGGAGA)n Simple_repeat Simple_repeat 5 175 0 2 1074 191 167 24 0 chr1 64217259 64217301 -132978131 + GA-rich Low_complexity Low_complexity 6 48 0 2 1074 348 266 21 21 chr1 64217325 64217421 -132978011 - RSINE1 SINE B4 -59 106 11 2 1074 440 302 61 36 chr1 64221110 64221357 -132974075 - Kanga1b DNA Tc2 -45 734 482 2 1074 395 264 70 0 chr1 64221353 64221482 -132973950 - MER110 LTR ERV1 -5 486 349 2 1074 2950 63 3 5 chr1 64221882 64222273 -132973159 - L1Md_F2 LINE L1 0 6582 6199 2 1074 209 93 0 23 chr1 64222273 64222310 -132973122 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 2 1074 579 278 171 47 chr1 64222314 64222427 -132973005 - MTE2b LTR MaLR -66 313 183 3 1074 234 0 0 0 chr1 64222427 64222453 -132972979 + (TTCTC)n Simple_repeat Simple_repeat 1 26 0 3 1074 1112 112 0 17 chr1 64222454 64222635 -132972797 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 3 1074 579 278 171 47 chr1 64222635 64222686 -132972746 - MTE2b LTR MaLR -197 182 111 3 1074 1006 45 0 0 chr1 64222686 64222818 -132972614 - L1Md_F3 LINE L1 -14 6570 6439 3 1074 579 278 171 47 chr1 64222818 64222907 -132972525 - MTE2b LTR MaLR -269 110 25 3 1074 824 178 30 6 chr1 64223055 64223219 -132972213 - MTC LTR MaLR 0 421 254 3 1074 4859 174 49 3 chr1 64223369 64224771 -132970661 + Lx7 LINE L1 5190 6674 -1022 3 1074 2977 24 0 0 chr1 64224776 64225111 -132970321 - IAPLTR1a_Mm LTR ERVK -2 335 1 3 134 56472 24 16 6 chr1 64225111 64231526 -132963906 - IAPEz-int LTR ERVK 0 6481 6 3 1075 2951 27 0 0 chr1 64231526 64231861 -132963571 - IAPLTR1a_Mm LTR ERVK -2 335 1 3 1075 3380 189 35 22 chr1 64231862 64232539 -132962893 + Lx7 LINE L1 6673 7358 -338 3 1075 1576 195 19 27 chr1 64232552 64232926 -132962506 + Lx7 LINE L1 7326 7696 0 3 1075 348 24 0 0 chr1 64235086 64235127 -132960305 + (TAA)n Simple_repeat Simple_repeat 3 43 0 3 1075 462 79 0 0 chr1 64235401 64235464 -132959968 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1075 216 158 0 0 chr1 64235465 64235503 -132959929 + GA-rich Low_complexity Low_complexity 3 40 0 3 1075 213 251 43 14 chr1 64235611 64235682 -132959750 + MIR SINE MIR 78 151 -57 3 1075 1128 252 24 55 chr1 64236125 64236453 -132958979 - MTEa LTR MaLR -58 321 4 3 1075 225 0 0 0 chr1 64236669 64236694 -132958738 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1075 241 298 32 11 chr1 64237057 64237152 -132958280 - LTR48 LTR ERV1 -630 157 61 3 1075 457 287 31 0 chr1 64239099 64239228 -132956204 - B1F SINE Alu -11 138 6 3 1075 446 269 49 7 chr1 64240959 64241101 -132954331 + B1F SINE Alu 2 149 0 3 1075 2117 138 33 22 chr1 64241131 64241493 -132953939 + ORR1B2 LTR MaLR 2 367 0 3 1075 361 286 157 0 chr1 64241681 64241821 -132953611 + MER3 DNA MER1_type 7 168 -41 3 1075 444 256 27 118 chr1 64244439 64244625 -132950807 + B4A SINE B4 12 180 -112 3 1075 195 42 0 0 chr1 64244646 64244670 -132950762 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1075 217 254 16 16 chr1 64245432 64245496 -132949936 + CT-rich Low_complexity Low_complexity 4 67 0 3 1075 371 308 62 0 chr1 64245638 64245768 -132949664 - ID_B1 SINE B4 -3 221 84 3 1075 271 228 24 37 chr1 64248245 64248327 -132947105 + CT-rich Low_complexity Low_complexity 1 81 0 3 1075 241 282 70 0 chr1 64248327 64248398 -132947034 - ID4_ SINE ID -3 80 5 3 1075 499 266 158 22 chr1 64248790 64249084 -132946348 + MLT1A LTR MaLR 1 336 -38 3 1075 26 30 0 0 chr1 64249090 64249123 -132946309 + AT_rich Low_complexity Low_complexity 1 33 0 3 1075 792 327 11 18 chr1 64251004 64251284 -132944148 - MLT1A0 LTR MaLR -65 300 23 3 1075 1141 68 0 18 chr1 64252231 64252397 -132943035 + (GAAAA)n Simple_repeat Simple_repeat 2 164 0 3 1075 1102 77 0 34 chr1 64252657 64252805 -132942627 + B1_Mus1 SINE Alu 1 143 -5 3 1075 378 0 0 0 chr1 64252811 64252853 -132942579 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1075 236 269 22 58 chr1 64252861 64252999 -132942433 - Lx8 LINE L1 -2 7471 7339 3 1075 1801 268 95 9 chr1 64253009 64253537 -132941895 - Lx8 LINE L1 -311 7162 6590 3 1075 1302 184 102 28 chr1 64253544 64253673 -132941759 - ORR1C2 LTR MaLR -35 349 194 3 1075 582 15 0 0 chr1 64253673 64253740 -132941692 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1075 1302 184 102 28 chr1 64253740 64253935 -132941497 - ORR1C2 LTR MaLR -191 193 1 3 1075 389 203 14 0 chr1 64253935 64254009 -132941423 - Lx8 LINE L1 -944 6529 6455 3 1075 397 186 79 34 chr1 64254015 64254104 -132941328 - ID_B1 SINE B4 -2 222 130 3 1075 214 259 19 0 chr1 64254194 64254248 -132941184 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1075 522 265 214 21 chr1 64254256 64254499 -132940933 - B4A SINE B4 0 292 3 3 1075 289 286 53 9 chr1 64256597 64256710 -132938722 - RMER1C Other Other -2 1340 1223 3 1075 931 264 94 23 chr1 64256619 64256918 -132938514 - Lx8 LINE L1 -2 7471 7152 3 1075 538 189 0 26 chr1 64257171 64257285 -132938147 - PB1D7 SINE Alu -1 119 9 3 1075 561 361 120 26 chr1 64257682 64258100 -132937332 + MLT1H LTR MaLR 85 541 -8 3 1075 563 133 0 39 chr1 64258261 64258363 -132937069 - B1_Mus2 SINE Alu 0 147 50 3 1075 1043 262 4 23 chr1 64258430 64258692 -132936740 + B4A SINE B4 36 292 0 3 1075 28 61 0 0 chr1 64258733 64258782 -132936650 + AT_rich Low_complexity Low_complexity 1 49 0 3 1075 219 299 108 25 chr1 64259524 64259644 -132935788 - L2 LINE L2 -1116 2303 2174 3 1075 365 55 36 0 chr1 64260813 64260868 -132934564 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 3 1075 234 208 42 0 chr1 64260883 64260931 -132934501 + C-rich Low_complexity Low_complexity 2 51 0 3 1075 462 240 50 0 chr1 64261934 64262055 -132933377 + MER94 DNA AcHobo 2 128 -6 3 1075 249 298 109 26 chr1 64262061 64262254 -132933178 - L2 LINE L2 -513 2906 2698 3 1075 247 204 0 45 chr1 64263894 64263966 -132931466 + MTE2a LTR MaLR 279 348 -31 3 1075 283 330 105 32 chr1 64264464 64264808 -132930624 - L2a LINE L2 0 3426 3058 3 1075 190 351 91 40 chr1 64264877 64265129 -132930303 - L2a LINE L2 -509 2910 2646 3 1075 234 214 0 35 chr1 64265629 64265687 -132929745 + MLT1B LTR MaLR 329 384 -6 3 1075 255 189 0 0 chr1 64265868 64265921 -132929511 + GA-rich Low_complexity Low_complexity 4 56 0 3 1075 746 38 10 0 chr1 64267935 64268044 -132927388 + B1_Mm SINE Alu 2 120 0 3 1075 721 218 7 15 chr1 64268466 64268601 -132926831 + RSINE1 SINE B4 11 144 -21 3 1075 255 31 0 0 chr1 64268602 64268634 -132926798 + (CCCA)n Simple_repeat Simple_repeat 2 33 0 3 1075 560 298 88 40 chr1 64273527 64273800 -132921632 - MER2 DNA MER2_type -24 321 36 3 1075 21 0 0 0 chr1 64273800 64273821 -132921611 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 978 76 0 0 chr1 64273862 64273994 -132921438 + (TCCC)n Simple_repeat Simple_repeat 2 133 0 3 1075 323 326 140 6 chr1 64274084 64274263 -132921169 - MLT1B LTR MaLR -18 372 170 3 1075 265 243 14 0 chr1 64274283 64274357 -132921075 - MLT1B LTR MaLR -273 117 43 3 1075 266 274 60 0 chr1 64276468 64276552 -132918880 + MLT1K LTR MaLR 483 571 -24 3 1075 184 311 115 10 chr1 64276674 64276778 -132918654 + MIR3 SINE MIR 88 202 -6 3 1075 682 220 31 52 chr1 64277346 64277538 -132917894 + B3 SINE B2 11 198 -18 3 1075 441 0 0 0 chr1 64277538 64277587 -132917845 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 1075 373 346 19 25 chr1 64278059 64278216 -132917216 + LTR16E1 LTR ERVL 368 523 -15 3 1075 789 81 0 0 chr1 64279748 64279871 -132915561 + (TC)n Simple_repeat Simple_repeat 1 123 0 3 1075 208 338 0 38 chr1 64281761 64281841 -132913591 - MIR SINE MIR -104 158 82 3 1075 405 211 104 60 chr1 64282112 64282294 -132913138 - MER53 DNA hAT 0 193 4 3 1075 234 191 24 0 chr1 64283062 64283104 -132912328 + MLT1B LTR MaLR 5 47 -343 3 1075 2867 3 0 0 chr1 64283176 64283487 -132911945 - L1Md_A LINE L1 -190 6392 6082 3 1075 1040 8 0 0 chr1 64283487 64283608 -132911824 + L1Md_A LINE L1 6462 6582 0 3 1075 507 263 156 72 chr1 64283644 64284004 -132911428 + Lx9 LINE L1 6093 6482 -1162 3 1075 1992 245 99 66 chr1 64284001 64284787 -132910645 + Lx9 LINE L1 6831 7642 -2 3 1075 663 132 0 0 chr1 64285597 64285711 -132909721 + (TGGA)n Simple_repeat Simple_repeat 4 117 0 3 1075 324 295 199 38 chr1 64285977 64286213 -132909219 - L2a LINE L2 -2 3424 3151 3 1075 1792 245 27 25 chr1 64286522 64286966 -132908466 - Lx8 LINE L1 -118 7355 6911 3 1075 192 125 0 0 chr1 64287034 64287066 -132908366 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1075 201 275 23 91 chr1 64287090 64287178 -132908254 - L2a LINE L2 -732 2687 2606 3 1075 260 239 197 79 chr1 64288519 64288646 -132906786 + B4 SINE B4 150 291 -1 3 1075 288 0 0 0 chr1 64288659 64288691 -132906741 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1075 308 160 27 0 chr1 64289597 64289672 -132905760 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 3 1075 242 318 17 125 chr1 64289674 64289742 -132905690 - MT2A LTR ERVL -73 460 398 3 1075 1019 157 173 0 chr1 64289742 64289933 -132905499 + URR1B DNA MER1_type 1 224 -1 3 1075 242 318 17 125 chr1 64289933 64290040 -132905392 - MT2A LTR ERVL -136 397 304 3 1075 386 309 24 8 chr1 64290098 64290225 -132905207 - MTEa LTR MaLR -250 129 1 3 1075 225 194 139 69 chr1 64290443 64290515 -132904917 + RMER15 LTR ERVL 499 575 0 3 1075 309 153 0 0 chr1 64290652 64290724 -132904708 + (TTAG)n Simple_repeat Simple_repeat 2 73 0 3 1075 591 272 0 23 chr1 64291416 64291544 -132903888 + ID_B1 SINE B4 81 205 -19 3 1075 1909 155 227 49 chr1 64291626 64292075 -132903357 - MT2A LTR ERVL 0 533 5 3 1075 258 106 0 0 chr1 64292524 64292571 -132902861 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1075 714 235 342 16 chr1 64292573 64292829 -132902603 - MTE2b LTR MaLR -2 377 39 3 1075 384 239 63 32 chr1 64292808 64292903 -132902529 - MTE2b LTR MaLR -281 98 1 3 1075 251 273 14 86 chr1 64293411 64293551 -132901881 + MLT1A1 LTR MaLR 277 406 -2 3 1075 238 379 96 10 chr1 64294884 64294979 -132900453 + PB1D10 SINE Alu 5 108 -9 3 1075 360 0 0 0 chr1 64294979 64295019 -132900413 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1075 932 80 160 0 chr1 64295743 64295868 -132899564 - B1_Mus1 SINE Alu -1 147 3 3 1075 7751 52 8 0 chr1 64296052 64296938 -132898494 + RLTR13B1 LTR ERVK 1 893 0 3 1075 290 276 131 54 chr1 64297012 64297272 -132898160 - L1ME3 LINE L1 -190 5972 5693 3 1075 1248 311 74 36 chr1 64297400 64297903 -132897529 + MT2A LTR ERVL 1 522 -11 3 1075 255 31 0 0 chr1 64297924 64297956 -132897476 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1075 308 259 78 48 chr1 64298066 64298232 -132897200 + L1M5 LINE L1 4930 5100 -1046 3 1075 458 262 113 73 chr1 64298406 64298653 -132896779 - RLTR12B LTR ERVK -31 497 241 3 1075 198 103 0 0 chr1 64298667 64298696 -132896736 + (TTCTC)n Simple_repeat Simple_repeat 1 29 0 3 1075 574 197 27 91 chr1 64298721 64298895 -132896537 - RLTR12B LTR ERVK -261 267 114 3 1075 314 194 16 0 chr1 64299090 64299152 -132896280 + L1M5 LINE L1 5151 5213 -933 3 1075 893 261 98 30 chr1 64300137 64300472 -132894960 - ORR1E LTR MaLR -1 358 1 3 1075 25 90 0 0 chr1 64301184 64301251 -132894181 + AT_rich Low_complexity Low_complexity 1 67 0 3 1075 346 314 34 0 chr1 64301378 64301496 -132893936 - MER20 DNA MER1_type -52 167 46 4 1075 180 0 0 0 chr1 64302056 64302076 -132893356 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1075 468 0 0 0 chr1 64302886 64302938 -132892494 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1075 216 0 0 0 chr1 64302940 64302964 -132892468 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1075 315 0 0 0 chr1 64303456 64303491 -132891941 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1075 214 203 40 13 chr1 64306195 64306270 -132889162 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 4 1075 34604 70 2 15 chr1 64306326 64311597 -132883835 + L1Md_F2 LINE L1 389 5585 -298 4 1075 8488 52 5 2 chr1 64311598 64312590 -132882842 + L1Md_F2 LINE L1 5587 6581 -1 4 1075 21 57 0 0 chr1 64312633 64312668 -132882764 + AT_rich Low_complexity Low_complexity 1 35 0 4 1075 465 263 15 8 chr1 64314111 64314245 -132881187 + L1_Mus1 LINE L1 678 812 -5807 4 1075 31407 103 12 28 chr1 64314247 64320360 -132875072 + L1_Mus1 LINE L1 728 6570 0 4 1075 210 128 0 0 chr1 64320367 64320406 -132875026 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1075 305 266 0 76 chr1 64320813 64320931 -132874501 + L3b LINE CR1 28 136 -346 4 1075 629 289 29 140 chr1 64321053 64321367 -132874065 - MTE2b LTR MaLR -4 375 97 4 1075 317 271 185 19 chr1 64322277 64322537 -132872895 + L1ME3 LINE L1 5760 6062 -100 4 1075 212 163 0 58 chr1 64322615 64322667 -132872765 + GA-rich Low_complexity Low_complexity 5 53 0 4 1075 788 286 113 75 chr1 64322982 64323398 -132872034 + MLT1C LTR MaLR 36 467 0 4 1075 433 356 28 6 chr1 64323470 64323651 -132871781 + MLT1F LTR MaLR 1 185 -363 4 1075 443 295 18 18 chr1 64323724 64323838 -132871594 + PB1D10 SINE Alu 4 117 0 4 1075 222 388 0 65 chr1 64325291 64325347 -132870085 - MIR SINE MIR -138 124 71 4 1075 1448 201 174 8 chr1 64325347 64325703 -132869729 - MTD LTR MaLR 0 419 5 4 1075 222 388 0 65 chr1 64325703 64325770 -132869662 - MIR SINE MIR -192 70 9 4 1075 1512 304 178 46 chr1 64326147 64327333 -132868099 + L1M4b LINE L1 530 1859 -5475 4 1075 1567 125 37 0 chr1 64327333 64327549 -132867883 + URR1B DNA MER1_type 2 225 0 4 1075 1512 304 178 46 chr1 64327549 64327730 -132867702 + L1M4b LINE L1 1860 2077 -5257 4 1075 1458 215 218 47 chr1 64327815 64328518 -132866914 + L1M4b LINE L1 2304 3126 -4208 4 1075 411 268 127 6 chr1 64328551 64328716 -132866716 + L1MC2 LINE L1 6082 6266 -78 4 1075 986 70 19 13 chr1 64328818 64328976 -132866456 + (GGAA)n Simple_repeat Simple_repeat 2 160 0 4 1075 399 239 121 89 chr1 64329003 64329103 -132866329 + B3A SINE B2 2 112 -86 4 1075 1992 232 38 26 chr1 64329103 64329599 -132865833 + RLTR16 LTR ERVK 4 505 0 4 1075 399 239 121 89 chr1 64329599 64329622 -132865810 + B3A SINE B2 113 129 -69 4 1075 515 240 90 5 chr1 64329648 64329862 -132865570 + L1M4b LINE L1 3076 3277 -3729 4 1075 802 224 13 79 chr1 64329864 64330092 -132865340 + B4A SINE B4 1 213 -79 4 1075 477 144 9 35 chr1 64330093 64330208 -132865224 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 4 1075 282 276 0 0 chr1 64330213 64330271 -132865161 + B4A SINE B4 229 286 -6 4 1075 625 234 119 39 chr1 64330320 64330605 -132864827 + L1M4b LINE L1 3258 3565 -3441 4 1075 555 299 82 52 chr1 64330640 64330983 -132864449 + L1MD3 LINE L1 7610 7962 -33 4 1075 209 255 65 130 chr1 64331579 64331687 -132863745 - L2c LINE L2 -6 3381 3281 4 1075 339 85 0 0 chr1 64333110 64333157 -132862275 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1075 724 338 43 35 chr1 64333652 64334161 -132861271 - Arthur1 DNA Tip100 -30 3917 3405 4 1075 688 221 21 0 chr1 64334440 64334580 -132860852 + B1_Mus2 SINE Alu 5 147 0 4 1075 605 110 0 10 chr1 64334583 64334684 -132860748 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 4 1075 203 32 65 0 chr1 64336511 64336542 -132858890 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 4 1075 522 0 0 0 chr1 64336593 64336651 -132858781 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 4 1075 372 22 0 0 chr1 64338023 64338068 -132857364 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1075 229 339 8 63 chr1 64340737 64340863 -132854569 - L2a LINE L2 -19 3407 3289 4 1075 1145 82 0 7 chr1 64340885 64341032 -132854400 + B1_Mus2 SINE Alu 2 147 0 4 1075 718 168 13 6 chr1 64341046 64341202 -132854230 + GA-rich Low_complexity Low_complexity 3 159 0 4 1075 492 299 56 100 chr1 64341844 64342305 -132853127 + L1M4b LINE L1 31 471 -6863 4 1075 337 314 93 30 chr1 64342369 64342605 -132852827 + L1M4b LINE L1 657 907 -6427 4 1075 1171 62 7 0 chr1 64342793 64342938 -132852494 + B1_Mm SINE Alu 1 146 -1 4 1075 360 61 0 0 chr1 64342938 64342956 -132852476 + (TA)n Simple_repeat Simple_repeat 1 18 0 4 1075 594 118 0 0 chr1 64342956 64343049 -132852383 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1075 360 61 0 0 chr1 64343049 64343079 -132852353 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1075 1008 266 188 40 chr1 64343410 64343815 -132851617 + L1MC3 LINE L1 6705 7165 -620 4 1075 2859 106 33 21 chr1 64343815 64344240 -132851192 - RLTR23 LTR ERV1 0 430 1 4 1075 1008 266 188 40 chr1 64344240 64344461 -132850971 + L1MC3 LINE L1 7166 7424 -361 4 1075 193 313 121 64 chr1 64345358 64345515 -132849917 - MIRb SINE MIR -8 260 95 4 1075 635 330 125 8 chr1 64345816 64346183 -132849249 - L2 LINE L2 -447 2972 2563 4 1075 426 69 0 0 chr1 64346450 64346508 -132848924 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1075 235 372 20 20 chr1 64348117 64348265 -132847167 + MIR3 SINE MIR 42 189 -19 4 1075 271 326 80 25 chr1 64348824 64349025 -132846407 - MER99 DNA hAT? -618 213 2 4 1075 185 35 69 0 chr1 64349031 64349060 -132846372 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1075 32 26 0 0 chr1 64349111 64349150 -132846282 + AT_rich Low_complexity Low_complexity 1 39 0 4 1075 192 97 0 0 chr1 64349671 64349702 -132845730 + (G)n Simple_repeat Simple_repeat 1 31 0 4 1075 831 92 53 15 chr1 64349971 64350104 -132845328 + B1_Mur4 SINE Alu 12 149 -1 4 1075 387 0 0 0 chr1 64350229 64350272 -132845160 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 4 1075 1350 68 11 6 chr1 64350300 64350477 -132844955 - B2_Mm1t SINE B2 -14 179 2 4 1075 522 0 0 0 chr1 64351551 64351609 -132843823 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1075 423 0 0 0 chr1 64351657 64351704 -132843728 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1075 288 77 0 0 chr1 64352635 64352674 -132842758 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1075 808 55 0 0 chr1 64354145 64354255 -132841177 - B1_Mm SINE Alu 0 147 38 4 1075 602 86 21 0 chr1 64355320 64355413 -132840019 + (CGTG)n Simple_repeat Simple_repeat 1 95 0 4 1075 21 0 0 0 chr1 64356062 64356083 -132839349 + AT_rich Low_complexity Low_complexity 1 21 0 4 1076 234 156 0 0 chr1 64356743 64356788 -132838644 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1076 372 317 41 36 chr1 64357167 64357363 -132838069 - L1ME3A LINE L1 -55 6118 5922 4 1076 180 0 0 0 chr1 64357364 64357384 -132838048 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1076 551 268 47 12 chr1 64357450 64357620 -132837812 + MER5B DNA MER1_type 2 177 -1 4 1076 628 329 49 42 chr1 64358690 64358998 -132836434 - MER2 DNA MER2_type -28 317 8 4 1076 207 0 0 0 chr1 64359952 64359975 -132835457 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 4 1076 1395 154 8 4 chr1 64359975 64360209 -132835223 + MTC LTR MaLR 2 236 -185 4 1076 3148 31 2 72 chr1 64360211 64360630 -132834802 - RLTR10 LTR ERVK 0 390 1 4 1076 17353 20 1 13 chr1 64360632 64362611 -132832821 - RLTR10-int LTR ERVK -3 1984 1 4 1076 3189 36 2 37 chr1 64362611 64363015 -132832417 - RLTR10 LTR ERVK 0 390 1 4 1076 433 186 186 0 chr1 64363016 64363113 -132832319 + MTC LTR MaLR 234 348 -73 4 1076 306 73 0 0 chr1 64364109 64364150 -132831282 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 1076 183 100 0 0 chr1 64364603 64364633 -132830799 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1076 488 246 107 34 chr1 64365155 64365332 -132830100 + B4A SINE B4 93 282 -10 4 1076 33 25 0 0 chr1 64365379 64365419 -132830013 + AT_rich Low_complexity Low_complexity 1 40 0 4 1076 323 305 10 10 chr1 64365918 64366014 -132829418 - MIR SINE MIR -141 121 26 4 1076 455 223 189 40 chr1 64366656 64366857 -132828575 + B4 SINE B4 18 248 -44 4 1076 348 275 0 0 chr1 64366921 64367147 -132828285 + (CA)n Simple_repeat Simple_repeat 1 226 0 4 1076 327 25 0 0 chr1 64367176 64367216 -132828216 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1076 201 147 0 0 chr1 64367573 64367607 -132827825 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 1076 464 140 0 11 chr1 64368040 64368134 -132827298 + (TATG)n Simple_repeat Simple_repeat 4 96 0 4 1076 957 196 0 6 chr1 64368137 64368496 -132826936 + (TG)n Simple_repeat Simple_repeat 1 357 0 4 1076 239 222 0 31 chr1 64368734 64368799 -132826633 + T-rich Low_complexity Low_complexity 2 64 0 4 1076 874 344 51 12 chr1 64371341 64371847 -132823585 + LTR82A LTR ERVL 345 870 -2 4 1076 3256 130 62 93 chr1 64371984 64372695 -132822737 + RMER6C LTR ERVK 1 689 -1 4 1076 8085 54 2 8 chr1 64372817 64373818 -132821614 - L1Md_F2 LINE L1 0 6582 5588 4 1076 8487 63 8 1 chr1 64373800 64374863 -132820569 + L1Md_F2 LINE L1 4550 5620 -263 4 1076 354 23 0 0 chr1 64374913 64374956 -132820476 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1076 1701 160 25 140 chr1 64375057 64375493 -132819939 - ORR1B1 LTR MaLR -8 386 1 4 1076 258 290 147 100 chr1 64375500 64375838 -132819594 - ORR1E LTR MaLR 0 379 6 4 1076 1176 249 139 16 chr1 64375838 64376262 -132819170 - L1MB8 LINE L1 -26 6152 5677 4 1076 1228 276 117 17 chr1 64376273 64376965 -132818467 - L1MB8 LINE L1 -743 5403 4643 4 1076 214 295 22 11 chr1 64377512 64377601 -132817831 + GA-rich Low_complexity Low_complexity 2 91 0 4 1076 312 91 0 0 chr1 64378060 64378104 -132817328 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1076 8759 86 12 1 chr1 64378201 64379966 -132815466 + L1VL4 LINE L1 218 1990 -1569 4 1076 261 0 0 0 chr1 64379966 64379995 -132815437 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 4 1076 8759 72 17 0 chr1 64379995 64380083 -132815349 + L1VL4 LINE L1 1991 2088 -1471 4 1076 7157 89 9 52 chr1 64380082 64381449 -132813983 + L1_Mus4 LINE L1 5314 6621 -15 4 1076 501 17 0 0 chr1 64381449 64381507 -132813925 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1076 660 310 80 71 chr1 64382189 64382523 -132812909 + L1MA5A LINE L1 5448 5796 -501 4 1076 5494 31 14 0 chr1 64382523 64383169 -132812263 + L1Md_F3 LINE L1 5930 6584 0 4 1076 660 310 80 71 chr1 64383169 64383310 -132812122 + L1MA5A LINE L1 5797 5927 -370 4 1076 618 168 0 0 chr1 64383313 64383426 -132812006 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1076 1280 210 115 38 chr1 64383593 64383940 -132811492 + ORR1D1 LTR MaLR 1 374 0 4 1076 318 325 8 35 chr1 64385264 64385428 -132810004 + MLT1B LTR MaLR 253 457 -10 4 1076 995 252 86 56 chr1 64385854 64386321 -132809111 + L1MC3 LINE L1 7294 7774 -11 5 1076 327 350 77 45 chr1 64386324 64386621 -132808811 + B4 SINE B4 1 285 -7 5 1076 23 33 0 0 chr1 64386676 64386706 -132808726 + AT_rich Low_complexity Low_complexity 1 30 0 5 1076 195 114 0 0 chr1 64386839 64386874 -132808558 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1076 747 258 0 58 chr1 64387236 64387409 -132808023 + RSINE1 SINE B4 3 165 0 5 1076 811 303 24 15 chr1 64387440 64387684 -132807748 + B4 SINE B4 2 247 -45 5 1076 363 173 0 0 chr1 64387763 64387844 -132807588 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1076 778 319 163 7 chr1 64388187 64388641 -132806791 - MLT1N2 LTR MaLR -37 525 1 5 1076 2797 62 28 11 chr1 64388712 64389073 -132806359 - L1_Mus1 LINE L1 0 6567 6201 5 1076 273 146 0 0 chr1 64391654 64391702 -132803730 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 1076 346 284 138 54 chr1 64392633 64392893 -132802539 - MLT1K LTR MaLR -115 480 199 5 1076 459 118 0 0 chr1 64393279 64393355 -132802077 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 5 1076 2412 138 32 77 chr1 64393355 64393794 -132801638 - MTC LTR MaLR -2 419 1 5 1076 381 22 0 0 chr1 64393795 64393841 -132801591 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1076 231 330 31 10 chr1 64393978 64394076 -132801356 - MLT2C1 LTR ERVL -255 209 110 5 1076 536 282 16 11 chr1 64394123 64394306 -132801126 - Tigger7 DNA MER2_type -50 2441 2258 5 1076 431 330 48 24 chr1 64394330 64394538 -132800894 - Tigger7 DNA MER2_type -2278 213 1 5 1076 316 299 0 0 chr1 64394540 64394627 -132800805 - MLT2C1 LTR ERVL -290 107 21 5 1076 243 203 0 0 chr1 64394950 64395024 -132800408 + T-rich Low_complexity Low_complexity 1 74 0 5 1076 1329 73 0 0 chr1 64396394 64396572 -132798860 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1076 243 0 0 0 chr1 64396591 64396618 -132798814 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1076 1155 58 0 0 chr1 64396618 64396756 -132798676 - B1_Mus2 SINE Alu -9 138 1 5 1076 1109 166 47 0 chr1 64397463 64397674 -132797758 - URR1A DNA MER1_type 0 226 6 5 1076 270 81 0 0 chr1 64397924 64397961 -132797471 + (CATA)n Simple_repeat Simple_repeat 1 37 0 5 1076 800 248 69 75 chr1 64398150 64398532 -132796900 - ORR1D2 LTR MaLR -4 370 5 5 1076 380 258 11 11 chr1 64398730 64398824 -132796608 + PB1D10 SINE Alu 14 107 -10 5 1076 214 211 0 0 chr1 64399527 64399565 -132795867 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1076 308 288 101 0 chr1 64401679 64401818 -132793614 - MER2 DNA MER2_type -34 311 159 5 1076 474 285 37 19 chr1 64401851 64402012 -132793420 - RMER15 LTR ERVL -16 559 396 5 1076 367 320 76 33 chr1 64402087 64402271 -132793161 - Lx8 LINE L1 -248 7225 7034 5 1076 292 331 35 21 chr1 64402736 64402881 -132792551 - MIRb SINE MIR -68 200 54 5 1076 291 128 0 0 chr1 64403146 64403193 -132792239 + ORR1C2 LTR MaLR 338 384 0 5 1076 604 35 35 0 chr1 64405599 64405685 -132789747 + (TTTTA)n Simple_repeat Simple_repeat 4 92 0 5 1076 362 284 96 13 chr1 64406920 64407077 -132788355 - LTR40a LTR ERVL -4 515 346 5 1076 213 39 0 0 chr1 64407293 64407319 -132788113 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 1076 769 263 19 14 chr1 64407482 64407690 -132787742 - LTR40a LTR ERVL -310 209 1 5 1076 279 279 15 0 chr1 64409640 64409708 -132785724 + ID4_ SINE ID 2 70 -13 5 1076 26 30 0 0 chr1 64409719 64409752 -132785680 + AT_rich Low_complexity Low_complexity 1 33 0 5 1076 1061 288 7 37 chr1 64410232 64410304 -132785128 - B4 SINE B4 -1 291 221 5 1076 245 29 29 0 chr1 64410304 64410338 -132785094 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1076 1061 288 7 37 chr1 64410338 64410564 -132784868 - B4 SINE B4 -72 220 2 5 1076 198 0 0 0 chr1 64410587 64410609 -132784823 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 5 1076 745 215 0 0 chr1 64410610 64410745 -132784687 - B1_Mur2 SINE Alu -8 141 7 5 1076 523 236 0 0 chr1 64411034 64411140 -132784292 - PB1D10 SINE Alu -11 106 1 5 1076 1290 122 42 9 chr1 64411926 64412141 -132783291 - URR1A DNA MER1_type 0 226 5 5 1076 760 282 49 60 chr1 64412177 64412546 -132782886 - MLT1B LTR MaLR -25 365 1 5 1076 335 308 154 0 chr1 64412965 64413134 -132782298 + MIR SINE MIR 62 256 -6 5 1076 304 287 0 0 chr1 64414639 64414730 -132780702 + B1F2 SINE Alu 20 110 -10 5 1076 212 343 129 0 chr1 64414961 64415031 -132780401 - L2b LINE L2 -47 3328 3250 5 1076 783 115 216 0 chr1 64415119 64415267 -132780165 + Lx3_Mus LINE L1 6830 7009 0 5 1076 288 0 0 0 chr1 64415695 64415727 -132779705 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1076 21 0 0 0 chr1 64416177 64416198 -132779234 + AT_rich Low_complexity Low_complexity 1 21 0 5 1076 26 64 0 0 chr1 64416216 64416263 -132779169 + AT_rich Low_complexity Low_complexity 1 47 0 5 1076 7777 82 39 14 chr1 64416296 64418134 -132777298 + L1VL2 LINE L1 128 2023 -1592 5 1076 2202 261 33 60 chr1 64418236 64419087 -132776345 - L1_Rod LINE L1 -1222 4625 3798 5 1076 1171 48 7 7 chr1 64419413 64419559 -132775873 + B1_Mm SINE Alu 1 146 -1 5 1076 425 272 191 41 chr1 64420169 64420407 -132775025 + B4 SINE B4 3 279 -13 5 1076 354 98 0 0 chr1 64420407 64420458 -132774974 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1076 290 208 52 0 chr1 64420529 64420606 -132774826 + MLT1B LTR MaLR 263 343 -47 5 1076 286 299 0 44 chr1 64421365 64421456 -132773976 + AmnSINE1 SINE SINE 2 88 -487 5 1076 3303 43 5 0 chr1 64421644 64422035 -132773397 + MTA_Mm LTR MaLR 1 393 -3 5 1076 182 37 37 0 chr1 64422271 64422298 -132773134 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1076 789 294 59 52 chr1 64422379 64422666 -132772766 - B4 SINE B4 -2 290 2 5 1076 233 329 37 0 chr1 64422716 64422798 -132772634 - MIRb SINE MIR -149 119 35 5 1076 183 237 0 0 chr1 64423179 64423217 -132772215 - MIRm SINE MIR -148 128 91 5 1076 465 279 122 27 chr1 64423242 64423430 -132772002 + MTD LTR MaLR 18 223 -196 5 1076 203 374 60 0 chr1 64424264 64424347 -132771085 + MIRb SINE MIR 161 248 -20 5 1076 200 278 19 0 chr1 64425177 64425231 -132770201 + CT-rich Low_complexity Low_complexity 6 60 0 5 1076 248 376 58 6 chr1 64425365 64425539 -132769893 - MER102c DNA MER1_type -28 303 121 5 1076 24 53 0 0 chr1 64425600 64425638 -132769794 + AT_rich Low_complexity Low_complexity 1 38 0 5 1076 390 283 26 0 chr1 64425958 64426071 -132769361 - MLT1A1 LTR MaLR -288 120 5 5 1076 225 254 0 31 chr1 64429435 64429500 -132765932 - MTEb LTR MaLR -2 377 315 5 1076 2022 120 12 15 chr1 64429660 64429998 -132765434 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1076 56314 29 9 2 chr1 64429998 64436423 -132759009 + IAPEz-int LTR ERVK 8 6478 -3 5 1076 2022 120 12 15 chr1 64436427 64436765 -132758667 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1076 1963 223 94 4 chr1 64437262 64437761 -132757671 + Lx9 LINE L1 7094 7637 -7 5 1076 244 228 0 0 chr1 64438951 64439008 -132756424 + (TTG)n Simple_repeat Simple_repeat 1 57 0 5 1076 716 295 4 67 chr1 64439095 64439320 -132756112 - B4 SINE B4 0 292 82 5 1076 216 0 0 0 chr1 64439323 64439347 -132756085 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1076 306 218 99 57 chr1 64439457 64439579 -132755853 - B1F SINE Alu -1 148 20 5 1076 1002 167 0 0 chr1 64439714 64439959 -132755473 + GA-rich Low_complexity Low_complexity 1 245 0 5 1076 350 307 99 36 chr1 64440067 64440365 -132755067 - L1ME3A LINE L1 -163 6010 5698 5 1076 336 308 102 7 chr1 64440641 64440788 -132754644 - MLT1C LTR MaLR -53 414 254 5 1076 619 324 97 16 chr1 64441137 64441385 -132754047 + B4 SINE B4 10 277 -15 5 1076 848 292 58 22 chr1 64441518 64442000 -132753432 + L1MB8 LINE L1 4601 5114 -1032 5 1076 546 239 87 82 chr1 64442041 64442237 -132753195 + B3A SINE B2 2 198 0 5 1076 354 191 85 0 chr1 64442413 64442507 -132752925 - Lx6 LINE L1 -60 7400 7299 5 1076 816 257 67 42 chr1 64442561 64442874 -132752558 + L1MB8 LINE L1 5255 5575 -609 5 1076 1488 202 30 23 chr1 64442885 64443184 -132752248 + Lx5 LINE L1 6745 7045 -5 5 1076 5377 46 33 0 chr1 64443242 64443913 -132751519 + L1Md_F3 LINE L1 5892 6584 0 5 1076 358 307 26 0 chr1 64443958 64444072 -132751360 + Lx5 LINE L1 6916 7032 -18 5 1076 213 39 0 0 chr1 64444072 64444098 -132751334 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 1076 995 300 100 27 chr1 64444107 64444463 -132750969 + L1MB8 LINE L1 5572 5967 -211 5 1076 405 0 0 0 chr1 64444463 64444508 -132750924 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1076 995 300 100 27 chr1 64444508 64444710 -132750722 + L1MB8 LINE L1 5968 6171 -7 5 1076 29 28 0 0 chr1 64444995 64445031 -132750401 + AT_rich Low_complexity Low_complexity 1 36 0 5 1076 7500 154 41 6 chr1 64445322 64446597 -132748835 + Lx4B LINE L1 5723 7041 -17 5 1076 1046 272 125 34 chr1 64446634 64447018 -132748414 + Lx8 LINE L1 7055 7473 0 5 1076 1229 130 0 0 chr1 64447270 64447454 -132747978 - B2_Mm2 SINE B2 -11 184 1 5 1076 237 98 0 0 chr1 64447465 64447506 -132747926 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1076 299 313 65 28 chr1 64448147 64448364 -132747068 + MamRep434 DNA TcMar 194 418 -8 5 1076 5878 89 4 4 chr1 64448910 64449691 -132745741 - Lx2 LINE L1 -2 6995 6215 5 1076 2418 124 13 10 chr1 64449691 64450081 -132745351 + L1_Mur2 LINE L1 3322 3712 -2165 5 1076 640 221 54 77 chr1 64450095 64450316 -132745116 + B3 SINE B2 1 216 0 5 1076 425 261 0 0 chr1 64450332 64450443 -132744989 + B1_Mur1 SINE Alu 26 136 -13 5 1076 8120 46 13 2 chr1 64452243 64453228 -132742204 + L1Md_F2 LINE L1 5587 6582 0 5 1076 594 196 0 9 chr1 64453836 64453944 -132741488 + B1_Mur1 SINE Alu 11 117 -32 5 1076 267 323 0 0 chr1 64454366 64454465 -132740967 + (CTGGGG)n Simple_repeat Simple_repeat 6 104 0 5 1076 802 28 0 27 chr1 64454466 64454577 -132740855 + B1_Mus2 SINE Alu 40 147 0 5 1076 276 305 29 66 chr1 64454874 64455011 -132740421 - MIRb SINE MIR -126 142 8 6 1076 563 249 54 16 chr1 64455134 64455318 -132740114 - B4A SINE B4 -100 192 2 6 1076 195 184 0 0 chr1 64456178 64456216 -132739216 + A-rich Low_complexity Low_complexity 1 38 0 6 1076 24 0 0 0 chr1 64456305 64456329 -132739103 + AT_rich Low_complexity Low_complexity 1 24 0 6 1076 481 257 94 14 chr1 64456712 64456850 -132738582 + B1F1 SINE Alu 1 149 0 6 1076 966 189 101 10 chr1 64456937 64457135 -132738297 - B3 SINE B2 0 216 1 6 1076 235 402 16 8 chr1 64457441 64457564 -132737868 + LTR88c LTR Genie? 66 189 -673 6 1076 307 307 130 9 chr1 64459455 64459570 -132735862 - MER45A DNA Tip100 -49 129 1 6 1076 435 236 15 61 chr1 64459918 64460049 -132735383 + L2a LINE L2 3302 3426 0 6 1076 22 0 0 0 chr1 64460149 64460171 -132735261 + AT_rich Low_complexity Low_complexity 1 22 0 6 1076 584 318 35 5 chr1 64460267 64460466 -132734966 + Tigger13a DNA MER2_type 440 644 -127 6 1076 411 38 0 0 chr1 64460797 64460850 -132734582 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1076 391 260 46 132 chr1 64460855 64461006 -132734426 - RSINE1 SINE B4 -24 141 4 6 1076 703 202 125 0 chr1 64461235 64461403 -132734029 + MLT1E2 LTR MaLR 1 189 -438 6 1076 1095 59 0 0 chr1 64461535 64461670 -132733762 - B1_Mus1 SINE Alu -9 139 5 6 1076 306 364 0 10 chr1 64461990 64462090 -132733342 + PB1 SINE Alu 1 99 -28 6 1076 862 311 112 19 chr1 64462803 64463269 -132732163 - MLT1E2 LTR MaLR -111 516 8 6 1076 528 100 0 0 chr1 64463451 64463531 -132731901 + (T)n Simple_repeat Simple_repeat 1 80 0 6 1076 1276 34 0 0 chr1 64463531 64463678 -132731754 - B1_Mm SINE Alu 0 147 1 6 1076 735 239 34 21 chr1 64463826 64464039 -132731393 + B3 SINE B2 1 216 0 6 1076 34 55 0 0 chr1 64464039 64464094 -132731338 + AT_rich Low_complexity Low_complexity 1 55 0 6 1076 1342 133 5 27 chr1 64464098 64464322 -132731110 + URR1B DNA MER1_type 7 225 0 6 1076 393 243 105 33 chr1 64464342 64464495 -132730937 - MLT1A1 LTR MaLR 0 408 245 6 1076 241 241 103 0 chr1 64464560 64464618 -132730814 - MLT1A1 LTR MaLR -279 129 66 6 1076 330 87 0 0 chr1 64464706 64464752 -132730680 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 6 1076 867 250 10 5 chr1 64465206 64465403 -132730029 + B3A SINE B2 1 198 0 6 1076 242 338 32 8 chr1 64466003 64466136 -132729296 + MIRc SINE MIR 2 135 -73 6 1076 189 107 0 0 chr1 64468159 64468187 -132727245 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 6 1076 225 321 82 12 chr1 64468556 64468641 -132726791 - MER34A1 LTR ERV1 -1 586 496 6 1076 439 143 86 0 chr1 64469199 64469269 -132726163 + Lx9 LINE L1 7203 7278 -366 6 1076 2148 215 194 99 chr1 64469271 64469727 -132725705 + RLTR25B LTR ERVK 3 424 -679 6 1076 261 0 0 0 chr1 64469727 64469756 -132725676 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1076 2429 146 96 26 chr1 64469756 64470305 -132725127 + RLTR25B LTR ERVK 328 1103 0 6 1076 809 182 294 4 chr1 64470305 64470581 -132724851 + Lx9 LINE L1 7274 7629 -15 6 1076 31 0 0 43 chr1 64470581 64470609 -132724823 + AT_rich Low_complexity Low_complexity 1 28 0 6 1076 6232 32 0 3 chr1 64470609 64471329 -132724103 - L1Md_F2 LINE L1 -13 6569 5852 6 1076 31 0 0 43 chr1 64471329 64471346 -132724086 + AT_rich Low_complexity Low_complexity 1 16 0 6 1076 1000 129 11 6 chr1 64471407 64471586 -132723846 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1076 1489 279 27 19 chr1 64471685 64471763 -132723669 + MTE2b LTR MaLR 1 78 -301 6 1076 2874 41 80 21 chr1 64471763 64472137 -132723295 - MTA_Mm LTR MaLR 0 396 1 6 1076 1489 279 27 19 chr1 64472137 64472434 -132722998 + MTE2b LTR MaLR 79 379 0 6 1076 552 293 118 36 chr1 64472439 64473388 -132722044 + L1MA5 LINE L1 1663 2513 -4524 6 1076 1513 50 7 1 chr1 64473387 64473588 -132721844 + L1Md_F2 LINE L1 5386 5588 -298 6 1076 8188 40 3 14 chr1 64473589 64474583 -132720849 + L1Md_F2 LINE L1 5587 6569 -13 6 1076 5177 74 26 11 chr1 64474606 64475305 -132720127 + L1Md_F2 LINE L1 5873 6581 -1 6 1076 225 0 0 0 chr1 64475374 64475399 -132720033 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1076 213 174 29 14 chr1 64475406 64475476 -132719956 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 1076 3039 49 0 3 chr1 64475483 64475851 -132719581 - L1_Mus1 LINE L1 0 6567 6201 6 1076 259 281 14 49 chr1 64476012 64476154 -132719278 + L1MA5 LINE L1 2828 2964 -4144 6 1076 1497 255 35 19 chr1 64476246 64476931 -132718501 + L1MA5 LINE L1 6053 6755 -517 6 1076 232 189 0 26 chr1 64476953 64477029 -132718403 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1076 736 223 100 34 chr1 64477039 64477308 -132718124 + L1MA5 LINE L1 6736 7022 -238 6 1076 2935 54 0 20 chr1 64477751 64478151 -132717281 - MTB LTR MaLR -8 392 1 6 1076 7108 99 16 71 chr1 64478151 64479313 -132716119 - MTB-int LTR MaLR 0 1098 1 6 1076 2961 81 17 30 chr1 64479313 64479718 -132715714 - MTB LTR MaLR 0 400 1 6 1076 648 290 92 10 chr1 64479781 64479976 -132715456 + B3 SINE B2 4 214 -2 6 1076 334 222 99 11 chr1 64480016 64480107 -132715325 + RSINE1 SINE B4 24 122 -43 6 1076 288 0 0 0 chr1 64480117 64480149 -132715283 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1076 39 22 0 0 chr1 64480167 64480213 -132715219 + AT_rich Low_complexity Low_complexity 1 46 0 6 1076 32 67 0 0 chr1 64481063 64481123 -132714309 + AT_rich Low_complexity Low_complexity 1 60 0 6 1076 625 247 174 27 chr1 64481318 64481576 -132713856 + Lx2B LINE L1 6659 6954 -46 6 1076 774 193 7 0 chr1 64481929 64482069 -132713363 + B1_Mus2 SINE Alu 1 141 -6 6 1076 249 248 102 28 chr1 64482426 64482534 -132712898 - LTR48 LTR ERV1 -637 150 35 6 1076 3868 15 0 24 chr1 64483086 64483578 -132711854 + MT2_Mm LTR ERVL 1 480 -13 6 1076 236 279 89 9 chr1 64483621 64483733 -132711699 - LTR16C LTR ERVL -17 472 352 6 1076 370 127 18 0 chr1 64483741 64483796 -132711636 + L1VL2 LINE L1 430 485 -6149 6 1076 9066 128 96 34 chr1 64483796 64486285 -132709147 + L1VL2 LINE L1 633 3290 -2593 6 1077 651 236 62 0 chr1 64487599 64487777 -132707655 + B4A SINE B4 1 189 -103 6 1077 231 245 0 0 chr1 64489467 64489516 -132705916 + T-rich Low_complexity Low_complexity 1 49 0 6 1077 270 0 0 0 chr1 64489732 64489762 -132705670 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1077 321 224 216 36 chr1 64489869 64490008 -132705424 + RSINE1 SINE B4 1 164 -1 6 1077 24 32 0 0 chr1 64490008 64490039 -132705393 + AT_rich Low_complexity Low_complexity 1 31 0 6 1077 204 200 0 0 chr1 64491198 64491243 -132704189 + CT-rich Low_complexity Low_complexity 3 47 0 6 1077 225 293 0 0 chr1 64491248 64491306 -132704126 + C-rich Low_complexity Low_complexity 2 59 0 6 1077 485 182 0 7 chr1 64491458 64491602 -132703830 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 1077 770 31 10 0 chr1 64493059 64493156 -132702276 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 6 1077 266 247 0 58 chr1 64493864 64493950 -132701482 + B4 SINE B4 5 85 -207 6 1077 620 130 0 11 chr1 64493951 64494044 -132701388 - Lx4A LINE L1 -257 6801 6710 6 1077 1196 111 147 19 chr1 64494044 64494255 -132701177 + Lx4A LINE L1 6820 7057 -1 6 1077 307 185 22 0 chr1 64494319 64494411 -132701021 + (CATA)n Simple_repeat Simple_repeat 3 96 0 6 1077 190 51 24 49 chr1 64495797 64495838 -132699594 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 6 1077 404 141 141 0 chr1 64496561 64496639 -132698793 + ID_B1 SINE B4 129 217 -7 6 1077 1513 186 121 6 chr1 64496749 64497089 -132698343 - ORR1C2 LTR MaLR -5 379 1 6 1077 880 139 0 24 chr1 64497482 64497651 -132697781 + CT-rich Low_complexity Low_complexity 4 168 0 6 1077 243 0 0 0 chr1 64497680 64497707 -132697725 + (TTGG)n Simple_repeat Simple_repeat 4 30 0 6 1077 226 235 0 0 chr1 64497708 64497759 -132697673 + (TTG)n Simple_repeat Simple_repeat 2 52 0 6 1077 215 157 0 136 chr1 64497793 64497852 -132697580 - ID4_ SINE ID -28 55 5 6 1077 630 23 34 0 chr1 64497853 64497941 -132697491 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 6 1077 3631 35 28 2 chr1 64497953 64498378 -132697054 - RLTR10C LTR ERVK 0 436 1 6 1077 950 41 53 6 chr1 64498382 64498552 -132696880 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1077 893 48 54 6 chr1 64498583 64498749 -132696683 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 6 1077 267 291 24 0 chr1 64498767 64498865 -132696567 - B1F SINE Alu -43 106 6 6 1077 213 339 88 52 chr1 64498865 64498953 -132696479 - B4A SINE B4 -91 188 2 6 1077 21 57 0 0 chr1 64498971 64499006 -132696426 + AT_rich Low_complexity Low_complexity 1 35 0 6 1077 303 247 92 26 chr1 64499276 64499429 -132696003 + MER34 LTR ERV1 385 587 0 6 1077 231 36 0 0 chr1 64499455 64499483 -132695949 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1077 2100 169 118 36 chr1 64500000 64500557 -132694875 + RLTR40 LTR ERVK 42 644 -173 1 1077 672 186 34 27 chr1 64501172 64501321 -132694111 + RLTR40 LTR ERVK 661 810 -7 1 1077 323 254 189 95 chr1 64502294 64502442 -132692990 - RSINE1 SINE B4 0 165 4 2 1077 1674 158 82 41 chr1 64503809 64504173 -132691259 - MTD LTR MaLR -14 405 27 3 1077 297 0 0 0 chr1 64504178 64504211 -132691221 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1077 476 106 32 11 chr1 64505195 64505290 -132690142 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 5 1077 2096 97 3 51 chr1 64505901 64506236 -132689196 - ORR1A2 LTR MaLR -8 319 1 6 1077 1316 185 147 23 chr1 64506389 64506743 -132688689 - RLTR12B LTR ERVK -130 398 1 7 1077 247 282 74 37 chr1 64507174 64507336 -132688096 + L1_Mur1 LINE L1 1445 1612 -4265 8 1077 733 235 35 0 chr1 64507395 64507565 -132687867 + B3A SINE B2 3 178 -20 9 1077 265 260 10 10 chr1 64507591 64507692 -132687740 + L1_Mur1 LINE L1 1677 1777 -4109 8 1077 589 306 48 139 chr1 64507919 64507944 -132687488 + L1M2 LINE L1 2125 2146 -3701 1 1077 2246 127 58 58 chr1 64507944 64508276 -132687156 + ORR1B1 LTR MaLR 1 352 -42 1 1077 935 148 68 45 chr1 64508276 64508453 -132686979 + B2_Mm2 SINE B2 1 181 -14 1 1077 1067 75 0 0 chr1 64508456 64508590 -132686842 + B1_Mus1 SINE Alu 5 138 -10 1 1077 225 0 0 0 chr1 64508590 64508615 -132686817 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1077 2246 127 58 58 chr1 64508615 64508671 -132686761 + ORR1B1 LTR MaLR 353 393 -1 1 1077 644 306 48 139 chr1 64508671 64509252 -132686180 + L1M2 LINE L1 2147 2665 -3182 1 1077 195 129 0 0 chr1 64509252 64509283 -132686149 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1 1077 1073 302 15 33 chr1 64509283 64509715 -132685717 + L1M2 LINE L1 2660 3076 -3067 1 1077 210 118 0 0 chr1 64511017 64511051 -132684381 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1077 372 257 65 19 chr1 64512220 64512327 -132683105 + PB1D10 SINE Alu 2 113 -4 1 1077 436 321 65 51 chr1 64512968 64513329 -132682103 - MLT1A1 LTR MaLR -3 362 5 1 1077 545 168 108 58 chr1 64513503 64513642 -132681790 + B1_Mur2 SINE Alu 2 147 -2 1 1077 1263 94 0 0 chr1 64514772 64514952 -132680480 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1077 1295 91 23 0 chr1 64514963 64515139 -132680293 - B2_Mm2 SINE B2 -15 180 1 2 1077 504 257 148 26 chr1 64515139 64515403 -132680029 + Charlie1a DNA MER1_type 1143 1438 -17 2 1077 886 285 123 34 chr1 64516182 64516628 -132678804 - MLT1D LTR MaLR 0 505 20 2 1077 266 180 0 16 chr1 64517388 64517450 -132677982 + GA-rich Low_complexity Low_complexity 1 61 0 2 1077 2419 183 20 0 chr1 64517450 64517893 -132677539 - MT2A LTR ERVL -81 452 1 2 1077 280 269 85 78 chr1 64517976 64518105 -132677327 - MTE2a LTR MaLR -151 268 139 2 1077 12886 52 2 3 chr1 64518112 64520373 -132675059 - L1Md_F2 LINE L1 0 6582 4327 2 1077 309 198 41 211 chr1 64520373 64520520 -132674912 - MTE2a LTR MaLR -257 122 1 2 1077 585 324 51 47 chr1 64520667 64520903 -132674529 + B4A SINE B4 34 270 -22 2 1077 387 89 0 0 chr1 64520908 64520964 -132674468 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1077 324 0 0 0 chr1 64522401 64522437 -132672995 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1077 231 387 24 8 chr1 64523396 64523521 -132671911 - MIRb SINE MIR -83 185 59 3 1077 9196 89 5 11 chr1 64523606 64525603 -132669829 + L1Md_F3 LINE L1 414 2395 -3488 3 1077 1520 58 5 16 chr1 64525585 64525778 -132669654 + L1Md_F3 LINE L1 5396 5586 -297 3 1077 8352 35 4 10 chr1 64525778 64526782 -132668650 + L1Md_F3 LINE L1 5587 6584 0 3 1077 1088 221 5 0 chr1 64527061 64527269 -132668163 - B3 SINE B2 -4 212 4 3 1077 23 0 0 0 chr1 64527274 64527297 -132668135 + AT_rich Low_complexity Low_complexity 1 23 0 3 1077 375 23 0 0 chr1 64527393 64527437 -132667995 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1077 501 270 79 30 chr1 64527837 64528001 -132667431 - B3A SINE B2 0 198 27 3 1077 721 248 20 0 chr1 64528164 64528317 -132667115 + RSINE1 SINE B4 8 163 -2 3 1077 240 35 0 0 chr1 64528322 64528351 -132667081 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1077 25 0 0 0 chr1 64528379 64528404 -132667028 + AT_rich Low_complexity Low_complexity 1 25 0 3 1077 337 298 135 58 chr1 64528828 64529035 -132666397 - Tigger15a DNA TcMar -363 352 130 4 1077 260 239 28 56 chr1 64529310 64529381 -132666051 + ID SINE ID 2 70 -154 4 1077 183 80 0 0 chr1 64529479 64529504 -132665928 + (CATA)n Simple_repeat Simple_repeat 2 26 0 4 1077 391 243 45 36 chr1 64529530 64529641 -132665791 + LTR16E2 LTR ERVL 280 391 -177 4 1077 727 257 84 139 chr1 64529657 64530037 -132665395 + MTE2b LTR MaLR 1 359 -20 4 1077 231 274 35 12 chr1 64530300 64530385 -132665047 + MLT1L LTR MaLR 502 588 -22 4 1077 261 0 0 0 chr1 64530397 64530426 -132665006 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1077 1158 54 0 20 chr1 64531292 64531442 -132663990 + B1_Mus2 SINE Alu 1 147 0 4 1077 494 70 0 14 chr1 64531458 64531530 -132663902 + (GGAGAA)n Simple_repeat Simple_repeat 3 73 0 4 1077 383 283 150 7 chr1 64531921 64532074 -132663358 - MLT1A0 LTR MaLR -13 352 178 4 1077 384 306 89 24 chr1 64532117 64532310 -132663122 - MLT1B LTR MaLR -147 243 34 5 1077 1142 202 74 39 chr1 64532568 64532957 -132662475 - RMER16 LTR ERVK 0 533 2 5 1077 605 281 65 0 chr1 64532962 64533147 -132662285 - B4A SINE B4 -94 198 2 5 1077 965 189 259 15 chr1 64533452 64533775 -132661657 - MTD LTR MaLR 0 419 18 5 1077 483 312 50 39 chr1 64533855 64534115 -132661317 + LTR33A_ LTR ERVL 251 513 -18 5 1077 704 221 146 6 chr1 64534542 64534706 -132660726 - ID_B1 SINE B4 -23 201 15 5 1077 614 200 33 0 chr1 64535655 64535775 -132659657 + B3 SINE B2 1 124 -92 5 1077 256 135 19 0 chr1 64535849 64535901 -132659531 + B3 SINE B2 164 216 0 5 1077 449 276 9 0 chr1 64536180 64536296 -132659136 + PB1D10 SINE Alu 1 117 0 5 1077 1854 183 18 59 chr1 64536377 64536767 -132658665 - ORR1C1 LTR MaLR 0 378 5 5 1077 378 322 37 28 chr1 64537435 64537649 -132657783 + MLT1H LTR MaLR 66 281 -268 5 1077 567 0 0 0 chr1 64537838 64537901 -132657531 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1077 1008 148 6 29 chr1 64537901 64538075 -132657357 + MERVL_2A-int LTR ERVL 10 179 -5582 6 1077 840 215 90 122 chr1 64538108 64538532 -132656900 + MT2A LTR ERVL 1 539 -62 6 1077 285 29 0 0 chr1 64538532 64538566 -132656866 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1077 297 75 0 0 chr1 64538566 64538605 -132656827 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1077 423 0 0 0 chr1 64538663 64538710 -132656722 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1077 3245 158 62 9 chr1 64538710 64539278 -132656154 + MERVL_2A-int LTR ERVL 10 607 -5154 6 1077 8611 145 10 10 chr1 64539275 64540649 -132654783 + MERVL_2A-int LTR ERVL 1058 2431 -3330 6 1077 741 38 67 0 chr1 64540670 64540775 -132654657 - BC1_Mm scRNA scRNA -40 112 1 6 1077 255 237 0 48 chr1 64540730 64540792 -132654640 - ZP3AR Satellite Satellite -126 86 28 6 1077 734 147 0 9 chr1 64540796 64540906 -132654526 + MERVL_2A-int LTR ERVL 2795 2903 -2858 6 1077 6554 158 35 14 chr1 64540905 64541121 -132654311 + MERVL_2A-int LTR ERVL 2445 2658 -3103 6 1077 1905 116 0 126 chr1 64541121 64541477 -132653955 - RLTR10E LTR ERVK 0 311 1 7 1077 6554 158 35 14 chr1 64541477 64542363 -132653069 + MERVL_2A-int LTR ERVL 2659 3571 -2190 6 1077 3613 150 9 13 chr1 64542358 64542912 -132652520 + MERVL_2A-int LTR ERVL 4782 5333 -428 6 1077 4072 35 12 6 chr1 64542921 64543407 -132652025 - L1Md_F2 LINE L1 -4 6578 6090 7 1077 2065 158 57 5 chr1 64543418 64543805 -132651627 - L1_Mur3 LINE L1 -6718 994 588 7 1077 454 169 0 0 chr1 64543805 64543882 -132651550 + MERVL_2A-int LTR ERVL 5403 5479 -282 6 1077 2127 125 86 13 chr1 64543882 64544279 -132651153 - RMER6A LTR ERVK 0 756 331 7 1077 363 231 66 0 chr1 64544288 64544379 -132651053 - B1_Mus2 SINE Alu -48 99 3 7 1077 539 175 13 100 chr1 64544379 64544489 -132650943 - MT2B LTR ERVL -386 215 154 7 1077 515 176 69 0 chr1 64544460 64544562 -132650870 - RMER6A LTR ERVK -581 109 1 7 1077 301 50 0 0 chr1 64544581 64544621 -132650811 + MERVL_2A-int LTR ERVL 5517 5556 -205 6 1077 8169 145 72 33 chr1 64544621 64546954 -132648478 + L1_Mur3 LINE L1 188 2603 -3277 7 1077 4369 15 2 0 chr1 64546954 64547435 -132647997 + LTRIS_Mm LTR ERV1 1 482 0 7 1077 8169 126 63 29 chr1 64547435 64547588 -132647844 + L1_Mur3 LINE L1 2604 2755 -3125 7 1077 1145 263 45 14 chr1 64547589 64547878 -132647554 + Lx6 LINE L1 6995 7292 -168 7 1077 233 224 0 49 chr1 64547977 64548038 -132647394 + ORR1A3-int LTR MaLR 567 624 -1339 7 1077 269 246 0 40 chr1 64548046 64548122 -132647310 + ORR1A3-int LTR MaLR 567 639 -1324 7 1077 378 71 0 51 chr1 64548122 64548181 -132647251 + MERVL_2A-int LTR ERVL 5706 5761 0 6 1077 652 197 0 52 chr1 64548181 64548315 -132647117 + MT2B LTR ERVL 1 127 -406 6 1077 900 229 58 65 chr1 64548863 64549157 -132646275 + MT2B LTR ERVL 255 546 -55 6 1077 414 0 0 0 chr1 64549159 64549205 -132646227 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 8 1077 240 35 0 0 chr1 64549206 64549235 -132646197 + (TGGG)n Simple_repeat Simple_repeat 3 31 0 8 1077 189 0 0 0 chr1 64549236 64549257 -132646175 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1077 382 349 70 17 chr1 64549485 64549657 -132645775 + MER5A DNA MER1_type 9 189 0 8 1077 354 320 26 52 chr1 64549811 64549966 -132645466 + MLT1J LTR MaLR 253 403 -109 8 1077 243 0 0 0 chr1 64550144 64550171 -132645261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1077 393 277 102 29 chr1 64550500 64550745 -132644687 + L1MC3 LINE L1 7390 7652 -133 8 1077 534 236 0 9 chr1 64550914 64551021 -132644411 + RSINE1 SINE B4 2 107 -58 8 1077 24 0 0 0 chr1 64551849 64551873 -132643559 + AT_rich Low_complexity Low_complexity 1 24 0 8 1077 256 290 106 53 chr1 64552063 64552176 -132643256 + MLT1A0 LTR MaLR 39 157 -208 8 1077 1079 45 15 0 chr1 64552176 64552309 -132643123 + B1_Mus1 SINE Alu 1 135 -13 9 1077 209 57 0 28 chr1 64552309 64552345 -132643087 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 9 1077 1878 157 21 50 chr1 64552380 64552802 -132642630 - RMER17C LTR ERVK 0 410 1 9 1077 506 143 0 0 chr1 64552802 64552879 -132642553 - RMER17C-int LTR ERVK 0 3238 3162 9 1077 1135 62 0 7 chr1 64553124 64553271 -132642161 + B1_Mm SINE Alu 2 147 0 9 1077 264 59 0 0 chr1 64553271 64553305 -132642127 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1077 545 286 44 25 chr1 64553371 64553529 -132641903 - B4A SINE B4 -131 161 1 9 1077 4159 103 11 36 chr1 64553566 64554180 -132641252 + MT2B LTR ERVL 3 601 0 9 1077 1066 259 79 24 chr1 64554255 64554583 -132640849 + MTD LTR MaLR 18 363 -56 9 1077 664 211 163 8 chr1 64554574 64554638 -132640794 + MTD-int LTR MaLR 977 1066 -192 9 1077 1322 92 22 5 chr1 64554638 64554823 -132640609 - B2_Mm2 SINE B2 -6 189 2 9 1077 664 211 163 8 chr1 64554823 64554997 -132640435 + MTD-int LTR MaLR 1067 1251 -7 9 1077 958 281 122 8 chr1 64555008 64555378 -132640054 + MTD LTR MaLR 6 417 -2 9 1077 483 340 172 11 chr1 64555400 64555872 -132639560 - L2 LINE L2 -354 3065 2518 1 1077 402 182 26 35 chr1 64555908 64556022 -132639410 + Lx9 LINE L1 7405 7517 -127 1 1077 222 118 0 0 chr1 64556037 64556071 -132639361 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1077 281 155 17 0 chr1 64556072 64556130 -132639302 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1077 676 205 46 59 chr1 64556130 64556368 -132639064 + Lx9 LINE L1 7403 7637 -7 1 1077 941 262 110 66 chr1 64556396 64556833 -132638599 + Kanga1 DNA Tc2 1223 1678 -67 1 1077 2134 96 38 6 chr1 64556882 64557197 -132638235 - ORR1A3 LTR MaLR 0 326 2 1 1077 188 275 115 0 chr1 64557227 64557320 -132638112 - MIR SINE MIR -47 221 116 1 1077 444 205 99 122 chr1 64557391 64557563 -132637869 - Tigger1 DNA MER2_type -14 2404 2237 1 1077 1129 252 78 47 chr1 64557562 64557920 -132637512 + MTE2b LTR MaLR 9 359 0 1 1077 979 222 40 8 chr1 64557922 64558172 -132637260 - Tigger1 DNA MER2_type -175 2243 1986 1 1077 535 263 26 0 chr1 64558187 64558301 -132637131 - ID_B1 SINE B4 -24 200 84 1 1077 279 0 0 0 chr1 64558302 64558333 -132637099 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 1077 544 223 43 0 chr1 64558411 64558550 -132636882 - Tigger1 DNA MER2_type -429 1989 1845 1 1077 210 71 0 0 chr1 64558551 64558579 -132636853 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1 1077 678 238 63 72 chr1 64558631 64558853 -132636579 - Tigger1 DNA MER2_type -548 1870 1651 1 1077 236 217 50 0 chr1 64559251 64559311 -132636121 - B3A SINE B2 -77 121 59 1 1077 1509 251 141 26 chr1 64559341 64559975 -132635457 - Tigger1 DNA MER2_type -1587 831 2 1 1077 2128 152 114 0 chr1 64560377 64560572 -132634860 + MTC LTR MaLR 1 195 -226 1 1077 617 25 0 12 chr1 64560572 64560652 -132634780 + (CAAG)n Simple_repeat Simple_repeat 2 80 0 1 1077 2128 152 114 0 chr1 64560652 64560832 -132634600 + MTC LTR MaLR 196 418 -3 1 1077 2544 83 0 0 chr1 64561221 64561548 -132633884 - ORR1A2 LTR MaLR 0 327 1 1 1077 488 314 32 7 chr1 64561679 64561833 -132633599 - RSINE1 SINE B4 -2 163 6 1 1077 823 65 9 0 chr1 64561937 64562044 -132633388 + B2_Mm1t SINE B2 3 110 -83 1 1077 22 0 0 0 chr1 64562044 64562066 -132633366 + AT_rich Low_complexity Low_complexity 1 22 0 1 1077 337 103 341 19 chr1 64562111 64562215 -132633217 + B2_Mm2 SINE B2 47 187 -8 1 1077 1035 122 0 7 chr1 64562223 64562371 -132633061 + B1_Mus1 SINE Alu 2 148 0 1 1077 438 234 130 69 chr1 64562486 64562702 -132632730 + L1MA7 LINE L1 6054 6282 -9 1 1077 780 132 208 0 chr1 64563288 64563432 -132632000 + ORR1B1 LTR MaLR 1 174 -220 1 1077 936 172 71 139 chr1 64563437 64563775 -132631657 + Lx5 LINE L1 6734 7048 -2 1 1077 595 144 288 0 chr1 64563793 64563925 -132631507 + ORR1B1 LTR MaLR 166 335 -59 1 1077 305 47 23 0 chr1 64563925 64563968 -132631464 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1077 756 104 0 0 chr1 64563968 64564074 -132631358 - B2_Mm2 SINE B2 -88 107 2 1 1077 422 204 0 39 chr1 64564074 64564146 -132631286 + ORR1B2 LTR MaLR 300 367 0 1 1077 430 359 170 14 chr1 64564968 64565245 -132630187 + MLT1I LTR MaLR 74 393 -18 1 1077 189 74 0 0 chr1 64565464 64565491 -132629941 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1077 934 230 19 14 chr1 64565532 64565744 -132629688 + B3 SINE B2 4 216 0 1 1077 1329 289 79 11 chr1 64566175 64566630 -132628802 - MLT1D LTR MaLR 0 505 20 1 1077 883 259 10 0 chr1 64567503 64567704 -132627728 + B3 SINE B2 3 205 -11 1 1077 29 28 0 0 chr1 64567704 64567740 -132627692 + AT_rich Low_complexity Low_complexity 1 36 0 1 1077 2586 25 3 24 chr1 64567864 64568194 -132627238 + L1Md_F3 LINE L1 6261 6583 -1 1 1077 409 268 109 98 chr1 64568345 64568519 -132626913 - L2b LINE L2 -1 3386 3204 1 1077 318 365 36 26 chr1 64568920 64569114 -132626318 + MIR SINE MIR 67 262 0 1 1077 280 328 181 0 chr1 64569562 64569739 -132625693 - L2a LINE L2 -3 3423 3215 1 1077 269 290 0 14 chr1 64569905 64569975 -132625457 + RMER15 LTR ERVL 347 415 -160 1 1077 378 0 0 0 chr1 64569994 64570036 -132625396 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1077 3785 114 52 2 chr1 64570260 64570832 -132624600 + MT2B LTR ERVL 1 601 0 1 1077 198 0 0 0 chr1 64570941 64570963 -132624469 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1077 1777 142 18 55 chr1 64571325 64571652 -132623780 + ORR1B2 LTR MaLR 3 317 -50 1 1077 219 114 0 0 chr1 64571818 64571853 -132623579 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1077 513 0 0 0 chr1 64571853 64571909 -132623523 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1077 271 293 40 0 chr1 64572221 64572296 -132623136 - L2c LINE L2 -24 3363 3286 1 1077 2123 162 5 50 chr1 64572360 64572743 -132622689 + ORR1C1 LTR MaLR 1 366 -12 1 1077 1012 173 30 12 chr1 64572754 64572918 -132622514 + ORR1D1 LTR MaLR 208 374 0 1 1077 181 213 11 138 chr1 64573276 64573363 -132622069 - L2 LINE L2 -660 2759 2684 1 1077 342 298 28 37 chr1 64574073 64574181 -132621251 + L2a LINE L2 3315 3421 -5 1 1077 450 0 0 0 chr1 64574899 64574949 -132620483 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1077 1536 157 178 25 chr1 64574981 64575335 -132620097 - MTD LTR MaLR 0 419 12 1 1077 492 282 115 11 chr1 64575490 64575673 -132619759 - MIR SINE MIR 0 262 61 1 1077 371 56 19 0 chr1 64575732 64575786 -132619646 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 1 1077 626 273 25 85 chr1 64575787 64575812 -132619620 - MTD LTR MaLR -185 222 196 1 1077 1103 29 73 0 chr1 64575812 64575948 -132619484 - B1_Mm SINE Alu -1 146 1 1 1077 1065 221 10 5 chr1 64575948 64576158 -132619274 - MTD LTR MaLR -209 210 1 1 1077 318 266 84 48 chr1 64576172 64576255 -132619177 - B3 SINE B2 -7 209 124 1 1077 516 238 82 0 chr1 64576645 64576767 -132618665 - B3 SINE B2 -82 134 3 1 1077 417 303 90 17 chr1 64576768 64576946 -132618486 + MLT1A0 LTR MaLR 130 320 -45 1 1077 25 0 0 0 chr1 64577004 64577029 -132618403 + AT_rich Low_complexity Low_complexity 1 25 0 1 1077 211 214 24 0 chr1 64577053 64577095 -132618337 - L2b LINE L2 -5 3370 3328 1 1077 191 308 184 56 chr1 64577250 64577608 -132617824 - L2 LINE L2 -339 3080 2677 1 1077 627 283 0 23 chr1 64578238 64578368 -132617064 - RSINE1 SINE B4 -16 149 23 1 1077 227 145 31 46 chr1 64579841 64579906 -132615526 + (CGGG)n Simple_repeat Simple_repeat 3 66 0 1 1077 222 62 0 0 chr1 64579920 64579952 -132615480 + (CCGGG)n Simple_repeat Simple_repeat 5 36 0 1 1077 217 167 32 48 chr1 64579995 64580058 -132615374 + (CCCG)n Simple_repeat Simple_repeat 2 63 0 1 1077 222 22 20 82 chr1 64580358 64580407 -132615025 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1077 272 261 72 92 chr1 64582458 64582625 -132612807 + MIRb SINE MIR 20 203 -65 1 1077 586 243 133 0 chr1 64583161 64583342 -132612090 - B3 SINE B2 -9 207 3 1 1077 2514 45 19 0 chr1 64583351 64583663 -132611769 - L1Md_A LINE L1 0 6582 6265 1 1077 636 194 69 8 chr1 64583786 64583916 -132611516 + B1_Mus1 SINE Alu 10 147 -1 1 1077 452 288 8 31 chr1 64584244 64584373 -132611059 - B1F SINE Alu -1 148 23 1 1077 180 0 0 0 chr1 64585028 64585048 -132610384 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1077 569 208 16 32 chr1 64585048 64585172 -132610260 - B1_Mus1 SINE Alu -8 140 19 1 1077 1211 41 0 7 chr1 64586390 64586539 -132608893 + B1_Mus1 SINE Alu 1 148 0 1 1077 243 61 0 0 chr1 64586542 64586575 -132608857 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1077 383 83 17 0 chr1 64586983 64587043 -132608389 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1077 981 256 154 16 chr1 64587145 64587838 -132607594 - L1MB3 LINE L1 -37 6141 5325 1 1077 234 0 0 0 chr1 64587896 64587922 -132607510 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1077 676 256 0 0 chr1 64587926 64588059 -132607373 - B1_Mur1 SINE Alu -13 136 4 1 1077 282 29 0 0 chr1 64588503 64588538 -132606894 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1077 449 214 62 0 chr1 64589169 64589281 -132606151 - PB1D9 SINE Alu 0 120 2 1 1077 238 221 91 23 chr1 64589594 64589682 -132605750 + L1MC1 LINE L1 6043 6136 -197 1 1077 850 182 45 6 chr1 64590418 64590595 -132604837 + B2_Mm2 SINE B2 1 184 -11 1 1077 601 269 15 0 chr1 64590750 64590880 -132604552 + RSINE1 SINE B4 5 136 -29 1 1077 797 281 38 5 chr1 64591486 64591672 -132603760 - B3A SINE B2 -6 192 1 1 1077 237 33 0 0 chr1 64591718 64591748 -132603684 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 1 1077 1104 31 0 0 chr1 64591755 64591884 -132603548 - B1_Mm SINE Alu -18 129 1 1 1077 414 0 0 0 chr1 64592581 64592627 -132602805 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1077 288 0 0 0 chr1 64592693 64592725 -132602707 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1077 479 273 30 96 chr1 64592730 64592896 -132602536 - B3A SINE B2 -42 156 2 1 1077 532 272 65 0 chr1 64593232 64593401 -132602031 - B3A SINE B2 -18 180 1 1 1077 192 358 67 0 chr1 64593773 64593893 -132601539 + L2a LINE L2 3223 3350 -76 1 1077 400 273 6 95 chr1 64594058 64594216 -132601216 - RSINE1 SINE B4 -14 151 8 1 1077 29 0 0 0 chr1 64594819 64594848 -132600584 + AT_rich Low_complexity Low_complexity 1 29 0 1 1077 201 74 0 0 chr1 64595033 64595060 -132600372 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1077 1148 75 0 0 chr1 64595065 64595212 -132600220 - B1_Mus1 SINE Alu 0 148 2 1 1077 225 115 15 76 chr1 64595268 64595334 -132600098 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1 1077 791 139 364 0 chr1 64595486 64595637 -132599795 + B3 SINE B2 1 206 -10 1 1077 246 32 0 0 chr1 64597849 64597880 -132597552 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1077 1133 72 0 0 chr1 64598084 64598223 -132597209 + B1_Mus2 SINE Alu 2 140 -7 1 1077 355 168 196 21 chr1 64598383 64598480 -132596952 - PB1D9 SINE Alu -3 117 4 2 1077 797 141 41 13 chr1 64599540 64599705 -132595727 - B2_Mm2 SINE B2 -26 167 1 2 1077 195 42 0 0 chr1 64599776 64599800 -132595632 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1077 1194 41 7 14 chr1 64599806 64599954 -132595478 - B1_Mm SINE Alu 0 147 1 2 1077 285 280 11 11 chr1 64600096 64600190 -132595242 - HAL1 LINE L1 -1600 907 814 2 1077 310 319 0 0 chr1 64600195 64600267 -132595165 + ID2 SINE ID 1 72 -11 2 1077 1164 296 101 8 chr1 64601053 64601175 -132594257 - Lx8 LINE L1 -2 7471 7330 2 1077 273 57 0 0 chr1 64601175 64601210 -132594222 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2 1077 1164 296 101 8 chr1 64601210 64601571 -132593861 - Lx8 LINE L1 -144 7329 6944 2 1077 229 292 83 0 chr1 64601981 64602053 -132593379 - RMER30 DNA MER1_type -1 201 124 2 1077 262 258 0 31 chr1 64602077 64602141 -132593291 + ID4_ SINE ID 22 83 0 2 1077 236 350 52 31 chr1 64602141 64602222 -132593210 + ID_B1 SINE B4 23 172 -120 2 1077 343 171 42 28 chr1 64602238 64602310 -132593122 + PB1D10 SINE Alu 37 109 -8 2 1077 356 271 31 20 chr1 64603214 64603312 -132592120 - PB1D10 SINE Alu -7 110 12 2 1077 511 207 34 8 chr1 64603335 64603452 -132591980 - PB1D9 SINE Alu 0 120 1 2 1077 1293 70 0 6 chr1 64603501 64603674 -132591758 - B2_Mm2 SINE B2 -23 172 1 2 1077 341 276 0 11 chr1 64603777 64603865 -132591567 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1077 1315 109 0 10 chr1 64604279 64604474 -132590958 - B2_Mm2 SINE B2 -1 194 2 2 1077 333 0 0 0 chr1 64607376 64607413 -132588019 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 1077 1159 30 0 0 chr1 64607413 64607547 -132587885 - B1_Mus1 SINE Alu -13 135 2 2 1077 234 367 108 8 chr1 64608066 64608195 -132587237 + Charlie7 DNA MER1_type 128 269 -2343 2 1077 769 248 153 36 chr1 64608280 64608581 -132586851 - L2a LINE L2 0 3426 3091 2 1077 288 227 32 64 chr1 64608840 64608934 -132586498 + Charlie7 DNA MER1_type 1617 1707 -905 2 1077 291 216 265 11 chr1 64609292 64609388 -132586044 - PB1D9 SINE Alu -13 107 1 2 1077 675 201 30 7 chr1 64609417 64609552 -132585880 - B1_Mus2 SINE Alu 0 147 10 2 1077 237 239 58 107 chr1 64609462 64609565 -132585867 - MT2B LTR ERVL -344 257 160 2 1077 22 56 0 0 chr1 64609698 64609734 -132585698 + AT_rich Low_complexity Low_complexity 1 36 0 2 1077 689 224 65 13 chr1 64609761 64609915 -132585517 - B3 SINE B2 -28 188 27 2 1077 793 128 17 0 chr1 64609962 64610079 -132585353 - PB1D9 SINE Alu 0 120 2 2 1077 530 182 86 14 chr1 64610585 64610724 -132584708 - L1MC1 LINE L1 0 6333 6185 2 1077 899 264 36 0 chr1 64610993 64611186 -132584246 - ID_B1 SINE B4 -24 200 1 2 1077 251 360 50 2 chr1 64611289 64611388 -132584044 + B1F2 SINE Alu 1 103 -17 2 1077 1102 121 6 12 chr1 64612219 64612386 -132583046 - MTC LTR MaLR -253 168 3 2 1077 654 174 256 11 chr1 64613066 64613246 -132582186 + URR1B DNA MER1_type 2 225 0 2 1077 4390 42 11 4 chr1 64613619 64614168 -132581264 + L1Md_F3 LINE L1 6032 6584 0 2 1077 974 196 49 0 chr1 64614264 64614468 -132580964 - B3 SINE B2 0 216 3 2 1077 503 231 111 0 chr1 64614666 64614783 -132580649 - B3 SINE B2 -5 211 82 2 1077 389 278 73 40 chr1 64614937 64615087 -132580345 + RSINE1 SINE B4 9 163 -2 2 1077 326 316 56 46 chr1 64615442 64615658 -132579774 + L3 LINE CR1 3525 3742 -747 2 1077 410 258 40 20 chr1 64615908 64616007 -132579425 + PB1D10 SINE Alu 2 102 -15 2 1077 613 56 365 0 chr1 64616007 64616114 -132579318 + B1_Mus1 SINE Alu 3 148 0 2 1077 779 159 25 76 chr1 64616118 64616275 -132579157 + B1_Mur4 SINE Alu 1 149 -1 2 1077 236 269 0 0 chr1 64616275 64616327 -132579105 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2 1077 531 255 86 10 chr1 64616328 64616519 -132578913 + B3 SINE B2 3 214 -2 2 1077 198 0 0 0 chr1 64616543 64616565 -132578867 + (CCA)n Simple_repeat Simple_repeat 3 24 0 2 1077 21 0 0 0 chr1 64616669 64616690 -132578742 + AT_rich Low_complexity Low_complexity 1 21 0 2 1077 195 69 0 0 chr1 64617208 64617237 -132578195 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1077 539 316 85 11 chr1 64617246 64617435 -132577997 - B3 SINE B2 -2 214 12 2 1077 1041 206 25 5 chr1 64618034 64618234 -132577198 - B3 SINE B2 -11 205 2 2 1078 631 201 115 0 chr1 64618902 64619041 -132576391 - B3 SINE B2 -2 214 60 2 1078 226 152 0 0 chr1 64619916 64619949 -132575483 - ID4_ SINE ID -9 74 42 2 1078 305 243 29 0 chr1 64620003 64620073 -132575359 - PB1 SINE Alu -3 124 53 2 1078 23 0 0 0 chr1 64621260 64621283 -132574149 + AT_rich Low_complexity Low_complexity 1 23 0 2 1078 252 0 0 0 chr1 64621400 64621428 -132574004 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1078 33 66 0 0 chr1 64621506 64621567 -132573865 + AT_rich Low_complexity Low_complexity 1 61 0 2 1078 347 195 162 132 chr1 64622014 64622150 -132573282 + MT2B LTR ERVL 125 264 -337 2 1078 833 123 15 44 chr1 64622049 64622185 -132573247 + B1_Mur2 SINE Alu 18 149 0 2 1078 447 264 87 16 chr1 64623352 64623479 -132571953 - B3 SINE B2 0 216 81 2 1078 269 250 59 50 chr1 64623486 64623587 -132571845 - PB1D10 SINE Alu -2 115 14 2 1078 330 283 93 9 chr1 64623856 64623963 -132571469 + B4A SINE B4 2 117 -175 2 1078 225 344 113 16 chr1 64624203 64624389 -132571043 + MIRc SINE MIR 9 212 -56 2 1078 1889 110 15 51 chr1 64624574 64624908 -132570524 + RLTRETN_Mm LTR ERVK 1 322 0 2 1078 277 227 13 39 chr1 64625291 64625369 -132570063 - ID4_ SINE ID -5 78 3 2 1078 268 211 82 27 chr1 64625512 64625585 -132569847 - PB1 SINE Alu -35 82 6 2 1078 225 353 44 0 chr1 64625909 64625977 -132569455 + RSINE1 SINE B4 71 141 -24 2 1078 330 45 0 0 chr1 64625978 64626022 -132569410 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1078 525 262 105 18 chr1 64626679 64626908 -132568524 + MER33 DNA MER1_type 1 249 -75 2 1078 488 126 0 11 chr1 64627249 64627337 -132568095 + (CGTG)n Simple_repeat Simple_repeat 4 90 0 2 1078 35450 48 1 0 chr1 64629090 64633881 -132561551 - L1Md_F2 LINE L1 -615 5967 1171 2 1078 322 227 118 20 chr1 64633930 64634055 -132561377 + PB1D10 SINE Alu 6 137 -12 2 1078 425 210 10 0 chr1 64634345 64634445 -132560987 - L1MB2 LINE L1 -34 6137 6037 2 1078 592 269 82 45 chr1 64634605 64634769 -132560663 - L1MB2 LINE L1 -217 5954 5780 2 1078 1189 111 21 16 chr1 64634769 64634961 -132560471 - B2_Mm1t SINE B2 0 193 1 2 1078 592 269 82 45 chr1 64634961 64635065 -132560367 - L1MB2 LINE L1 -392 5779 5676 2 1078 180 0 0 0 chr1 64635133 64635153 -132560279 + (CCCA)n Simple_repeat Simple_repeat 3 22 0 2 1078 878 85 0 0 chr1 64635256 64635374 -132560058 + B1_Mus1 SINE Alu 1 118 -30 2 1078 546 137 53 0 chr1 64635372 64635467 -132559965 + ORR1A2 LTR MaLR 228 327 0 2 1078 558 186 54 10 chr1 64635560 64635727 -132559705 - L1MB2 LINE L1 -720 5522 5355 2 1078 441 0 0 0 chr1 64635741 64635790 -132559642 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1078 633 266 151 11 chr1 64635798 64635979 -132559453 - B4A SINE B4 -33 259 54 2 1078 632 254 109 3 chr1 64636075 64636359 -132559073 - L1MB2 LINE L1 -927 5213 4900 2 1078 878 238 69 5 chr1 64636524 64636727 -132558705 - B3 SINE B2 0 216 1 2 1078 722 135 22 8 chr1 64636767 64636901 -132558531 - Lx7 LINE L1 0 7696 7561 2 1078 1142 85 0 35 chr1 64636881 64637052 -132558380 + L1Md_T LINE L1 6418 6582 0 2 1078 490 217 198 3 chr1 64637068 64637292 -132558140 - Lx7 LINE L1 -122 7574 7366 2 1078 17813 152 18 10 chr1 64637286 64640344 -132555088 - L1_Mur1 LINE L1 0 5886 2799 2 1078 396 0 0 0 chr1 64640344 64640388 -132555044 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 2 1078 17813 152 18 10 chr1 64640388 64640630 -132554802 - L1_Mur1 LINE L1 -3088 2798 2560 2 1078 3869 93 56 47 chr1 64640636 64641227 -132554205 - L1VL4 LINE L1 -2005 1554 948 2 1078 342 0 0 0 chr1 64641227 64641265 -132554167 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1078 1257 27 7 0 chr1 64641271 64641417 -132554015 - B1_Mm SINE Alu 0 147 1 2 1078 3869 133 56 50 chr1 64641417 64642131 -132553301 - L1VL4 LINE L1 -5355 947 199 2 1078 2553 209 98 52 chr1 64642133 64643289 -132552143 - L1_Mur3 LINE L1 -4352 1528 322 2 1078 420 268 168 20 chr1 64643289 64643491 -132551941 - B4A SINE B4 -50 242 11 2 1078 290 314 91 0 chr1 64643524 64643645 -132551787 - RSINE1 SINE B4 -9 156 25 2 1078 35 24 0 0 chr1 64648420 64648462 -132546970 + AT_rich Low_complexity Low_complexity 1 42 0 2 1078 23 0 0 0 chr1 64648881 64648904 -132546528 + AT_rich Low_complexity Low_complexity 1 23 0 2 1078 265 206 17 143 chr1 64650259 64650378 -132545054 + MT2B LTR ERVL 152 255 -346 2 1078 594 132 244 9 chr1 64650276 64650391 -132545041 + B1_Mur2 SINE Alu 6 147 -2 2 1078 458 256 98 13 chr1 64650946 64651162 -132544270 - L1MB5 LINE L1 -75 6099 5860 2 1078 257 279 14 42 chr1 64651233 64651304 -132544128 - ID2 SINE ID -11 72 4 2 1078 273 29 0 0 chr1 64651410 64651444 -132543988 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1078 378 0 0 0 chr1 64651786 64651828 -132543604 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1078 570 296 81 11 chr1 64652481 64652655 -132542777 + B3A SINE B2 5 190 -8 2 1078 26 0 0 0 chr1 64653059 64653085 -132542347 + AT_rich Low_complexity Low_complexity 1 26 0 2 1078 270 316 25 38 chr1 64653265 64653344 -132542088 + ID4 SINE ID 3 80 -3 2 1078 421 235 66 2 chr1 64653789 64653911 -132541521 + B1F2 SINE Alu 1 127 -22 2 1078 1228 48 0 0 chr1 64655172 64655317 -132540115 + B1_Mus2 SINE Alu 1 145 -2 2 1078 230 0 33 0 chr1 64655326 64655356 -132540076 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1078 198 250 101 38 chr1 64657503 64657582 -132537850 + MER5A DNA MER1_type 19 102 -87 3 1078 212 304 76 0 chr1 64657678 64657757 -132537675 + MIRb SINE MIR 29 113 -155 3 1078 1177 74 0 0 chr1 64658084 64658232 -132537200 - B1_Mus1 SINE Alu 0 148 1 3 1078 589 101 0 75 chr1 64658698 64658805 -132536627 - B2_Mm2 SINE B2 0 195 97 3 1078 402 85 0 0 chr1 64658825 64658884 -132536548 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1078 708 196 19 51 chr1 64658886 64659042 -132536390 - B3A SINE B2 -47 151 1 3 1078 378 42 0 0 chr1 64659263 64659311 -132536121 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1078 235 263 103 70 chr1 64659363 64659546 -132535886 + RLTR11A LTR ERVK 112 270 -307 3 1078 229 181 179 111 chr1 64659560 64659722 -132535710 + RLTR12A LTR ERVK 376 548 -20 3 1078 473 203 19 19 chr1 64659772 64659989 -132535443 + (CATA)n Simple_repeat Simple_repeat 1 217 0 3 1078 274 272 123 28 chr1 64660048 64660154 -132535278 - MIR SINE MIR -65 197 82 3 1078 790 256 30 0 chr1 64660575 64660774 -132534658 - B3 SINE B2 -10 206 2 3 1078 205 171 0 0 chr1 64660846 64660881 -132534551 + A-rich Low_complexity Low_complexity 2 36 0 3 1078 261 0 0 0 chr1 64660944 64660973 -132534459 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1078 448 267 8 32 chr1 64660977 64661101 -132534331 + MER5A1 DNA MER1_type 14 134 -32 3 1078 238 162 0 52 chr1 64661243 64661300 -132534132 + Alu_5 SINE Alu 1 52 -75 3 1078 228 245 0 19 chr1 64661887 64661941 -132533491 + CT-rich Low_complexity Low_complexity 2 54 0 3 1078 305 261 102 54 chr1 64662615 64662781 -132532651 + L1MB8 LINE L1 6001 6174 -4 3 1078 586 203 26 65 chr1 64665351 64665504 -132529928 - B1F1 SINE Alu -1 148 2 3 1078 555 311 15 25 chr1 64665693 64665894 -132529538 + B3 SINE B2 1 199 -17 3 1078 343 288 27 9 chr1 64666100 64666212 -132529220 - PB1D7 SINE Alu -5 115 2 3 1078 580 284 187 10 chr1 64667817 64668020 -132527412 - Tigger5 DNA MER2_type -2164 242 4 3 1078 444 19 0 0 chr1 64668453 64668506 -132526926 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1078 262 266 202 0 chr1 64668590 64668714 -132526718 + MLT1K LTR MaLR 414 562 -33 3 1078 604 136 180 23 chr1 64669212 64669340 -132526092 + B1_Mur1 SINE Alu 2 149 0 3 1078 582 258 198 13 chr1 64670501 64670733 -132524699 + RMER15 LTR ERVL 301 575 0 3 1078 391 282 86 15 chr1 64671017 64671215 -132524217 - MLT1C LTR MaLR -162 305 94 3 1078 371 290 189 9 chr1 64671223 64671435 -132523997 + MER47B DNA MER2_type 2 251 -167 3 1078 492 230 34 54 chr1 64671519 64671666 -132523766 - B1F1 SINE Alu 0 149 6 3 1078 276 167 62 37 chr1 64671671 64671752 -132523680 + MER47B DNA MER2_type 335 417 -1 3 1078 1316 205 95 64 chr1 64671789 64672148 -132523284 + ORR1D2 LTR MaLR 1 370 0 3 1078 387 127 0 0 chr1 64672772 64672835 -132522597 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1078 775 281 62 29 chr1 64672858 64673133 -132522299 - B4 SINE B4 -8 284 1 3 1078 312 254 69 21 chr1 64673506 64673651 -132521781 - Charlie1a DNA MER1_type -14 1441 1290 3 1078 348 273 251 17 chr1 64673656 64673887 -132521545 + B4A SINE B4 1 285 -7 3 1078 417 66 0 0 chr1 64673896 64673957 -132521475 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 3 1078 1279 203 76 54 chr1 64674004 64674321 -132521111 + Lx7 LINE L1 316 639 -7089 3 1078 1230 110 14 23 chr1 64674325 64674539 -132520893 + Lx7 LINE L1 1407 1618 -4262 3 1078 1134 88 0 0 chr1 64674542 64674701 -132520731 + B2_Mm2 SINE B2 5 163 -32 3 1078 473 47 0 15 chr1 64674703 64674768 -132520664 + (GGAAA)n Simple_repeat Simple_repeat 2 65 0 3 1078 14275 137 65 45 chr1 64674771 64675235 -132520197 + Lx7 LINE L1 3048 3527 -2353 3 1078 225 0 0 0 chr1 64675235 64675260 -132520172 + (TGG)n Simple_repeat Simple_repeat 1 25 0 3 1078 14275 137 65 45 chr1 64675260 64676922 -132518510 + Lx7 LINE L1 3528 5271 -609 3 1078 1226 48 0 0 chr1 64676922 64677068 -132518364 + B1_Mus2 SINE Alu 2 147 0 3 1078 14275 149 69 40 chr1 64677068 64677809 -132517623 + Lx7 LINE L1 5272 6004 -1692 3 1078 981 0 0 0 chr1 64677809 64677918 -132517514 + (GGAAA)n Simple_repeat Simple_repeat 2 110 0 3 1078 3140 221 92 7 chr1 64677918 64678283 -132517149 + Lx7 LINE L1 6005 6401 -1295 3 1078 1294 202 24 4 chr1 64678300 64678553 -132516879 - Lx9 LINE L1 -247 7397 7140 3 1078 249 33 0 0 chr1 64678603 64678633 -132516799 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1078 2403 163 57 43 chr1 64678658 64679392 -132516040 - RMER19B LTR ERVK -13 889 1 3 1078 180 0 0 0 chr1 64679411 64679431 -132516001 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1078 475 165 20 30 chr1 64679432 64679532 -132515900 + Lx9 LINE L1 7540 7638 -6 3 1078 23 33 0 0 chr1 64679541 64679571 -132515861 + AT_rich Low_complexity Low_complexity 1 30 0 3 1078 322 314 25 25 chr1 64680367 64680488 -132514944 + B1F SINE Alu 20 140 -9 3 1078 318 200 0 103 chr1 64680584 64680662 -132514770 + ID4 SINE ID 3 72 -11 3 1078 495 48 0 0 chr1 64680666 64680728 -132514704 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1078 216 0 0 0 chr1 64680797 64680821 -132514611 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1078 186 43 0 0 chr1 64680825 64680848 -132514584 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1078 264 206 110 0 chr1 64680865 64680938 -132514494 - Tigger7 DNA MER2_type -173 2318 2238 3 1078 284 161 32 0 chr1 64680948 64681010 -132514422 - Tigger7 DNA MER2_type -2087 404 341 3 1078 390 200 40 32 chr1 64681438 64681562 -132513870 + RLTR15 LTR ERVK 35 159 -200 3 1078 354 326 49 28 chr1 64682542 64682610 -132512822 - Tigger7 DNA MER2_type -2236 255 181 3 1078 375 23 0 0 chr1 64682610 64682654 -132512778 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1078 354 326 49 28 chr1 64682654 64682727 -132512705 - Tigger7 DNA MER2_type -2311 180 111 3 1078 402 74 0 0 chr1 64682729 64682783 -132512649 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1078 2330 99 9 12 chr1 64682783 64683110 -132512322 + ORR1A3 LTR MaLR 1 326 0 3 1078 200 245 38 0 chr1 64683110 64683163 -132512269 + (CATA)n Simple_repeat Simple_repeat 1 55 0 3 1078 1413 89 16 0 chr1 64683241 64683432 -132512000 + B2_Mm2 SINE B2 1 194 -1 3 1078 632 193 35 0 chr1 64683816 64683930 -132511502 - PB1D9 SINE Alu -2 118 1 3 1078 262 275 65 32 chr1 64683955 64684109 -132511323 + RMER15 LTR ERVL 1 159 -416 3 1078 353 229 141 25 chr1 64684198 64684319 -132511113 + RMER15 LTR ERVL 384 518 -57 3 1078 718 161 6 89 chr1 64685022 64685179 -132510253 + B1_Mur4 SINE Alu 6 149 -1 3 1078 292 155 0 27 chr1 64685578 64685651 -132509781 + T-rich Low_complexity Low_complexity 4 74 0 3 1078 665 117 0 0 chr1 64685710 64685804 -132509628 - 4.5SRNA scRNA scRNA 0 94 1 3 1078 708 256 118 78 chr1 64685903 64686285 -132509147 + L1MB7 LINE L1 5787 6183 -1 3 1078 226 260 20 0 chr1 64686302 64686352 -132509080 + ID4_ SINE ID 11 61 -22 3 1078 28 0 0 0 chr1 64686504 64686532 -132508900 + AT_rich Low_complexity Low_complexity 1 28 0 3 1078 962 255 117 64 chr1 64686954 64687314 -132508118 + MTE2a LTR MaLR 1 379 0 3 1078 352 278 30 53 chr1 64687352 64687485 -132507947 + B4 SINE B4 7 136 -156 3 1078 325 217 43 0 chr1 64687468 64687537 -132507895 - B3A SINE B2 -125 73 2 3 1078 1114 234 89 20 chr1 64688799 64689148 -132506284 + L1MD3 LINE L1 4484 4856 -1290 3 1078 360 0 0 0 chr1 64689172 64689212 -132506220 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1078 573 250 58 21 chr1 64689284 64689353 -132506079 - B4 SINE B4 -96 196 128 3 1078 2731 20 178 0 chr1 64689353 64689702 -132505730 + IAPLTR2a LTR ERVK 1 411 0 3 1078 573 250 58 21 chr1 64689702 64689820 -132505612 - B4 SINE B4 -165 127 2 3 1078 656 266 48 62 chr1 64689820 64690129 -132505303 + L1MD3 LINE L1 4848 5152 -994 3 1078 693 298 164 15 chr1 64690348 64690880 -132504552 + L1MD3 LINE L1 5284 5894 -2101 3 1078 764 258 106 17 chr1 64690898 64691135 -132504297 + B4A SINE B4 34 291 -1 3 1078 468 293 11 28 chr1 64691194 64691373 -132504059 + L1MD3 LINE L1 5878 6053 -291 3 1078 329 198 191 36 chr1 64691387 64691497 -132503935 - Lx5 LINE L1 0 7050 6924 3 1078 3321 160 57 7 chr1 64691508 64692055 -132503377 + Lx5 LINE L1 6344 6917 -133 3 1078 237 288 0 0 chr1 64692055 64692121 -132503311 + L1MC1 LINE L1 6037 6102 -231 3 1078 1804 148 91 30 chr1 64692799 64693160 -132502272 + ORR1C2 LTR MaLR 1 383 -1 3 1078 804 164 35 7 chr1 64693745 64693886 -132501546 + B1_Mur1 SINE Alu 2 146 -3 3 1078 180 0 0 0 chr1 64693944 64693964 -132501468 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1078 339 198 11 69 chr1 64693995 64694082 -132501350 - B4A SINE B4 0 292 211 3 1078 509 252 63 123 chr1 64694566 64694851 -132500581 - B4A SINE B4 -22 270 3 3 1078 200 318 0 0 chr1 64695039 64695102 -132500330 + MIR3 SINE MIR 125 187 -21 3 1078 607 222 13 9 chr1 64696005 64696157 -132499275 - B1F SINE Alu 0 149 7 3 1078 195 146 18 35 chr1 64696898 64696955 -132498477 + CT-rich Low_complexity Low_complexity 2 57 0 3 1078 1275 132 87 5 chr1 64697035 64697241 -132498191 - URR1A DNA MER1_type -3 223 1 3 1078 309 273 53 26 chr1 64697495 64697608 -132497824 + MLT1A1 LTR MaLR 1 116 -249 3 1078 335 257 209 73 chr1 64697647 64697767 -132497665 + MLT1A1 LTR MaLR 173 331 -77 3 1078 839 224 46 15 chr1 64697767 64697962 -132497470 - B3 SINE B2 -13 203 3 3 1078 335 257 209 73 chr1 64697962 64698047 -132497385 + MLT1A1 LTR MaLR 332 406 -2 3 1078 201 94 0 0 chr1 64699911 64699943 -132495489 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1078 230 200 0 20 chr1 64699982 64700033 -132495399 + T-rich Low_complexity Low_complexity 2 51 0 3 1078 2309 152 65 5 chr1 64700644 64701041 -132494391 + MTC LTR MaLR 1 421 0 3 1078 643 208 0 25 chr1 64701183 64701319 -132494113 - B1_Mur1 SINE Alu -2 118 2 3 1078 356 220 0 135 chr1 64701213 64701339 -132494093 - MT2B LTR ERVL -341 260 152 3 1078 285 299 64 71 chr1 64701354 64701635 -132493797 - L1M5 LINE L1 -3446 2700 2422 3 1078 1141 167 70 16 chr1 64702009 64702253 -132493179 - Lx4B LINE L1 -4 7054 6798 3 1078 305 260 19 29 chr1 64702254 64702357 -132493075 - L1MB2 LINE L1 -42 6129 6028 3 1078 853 192 109 0 chr1 64702475 64702668 -132492764 - B3 SINE B2 -2 214 1 3 1078 1796 87 44 0 chr1 64702959 64703234 -132492198 - ORR1A2 LTR MaLR -8 319 33 3 1078 860 177 63 42 chr1 64703662 64703851 -132491581 + MTC LTR MaLR 1 193 -228 3 1078 940 151 0 11 chr1 64703870 64704051 -132491381 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1078 1077 134 74 5 chr1 64704057 64704260 -132491172 + MTC LTR MaLR 205 421 0 3 1078 401 227 13 0 chr1 64704314 64704389 -132491043 + ID4 SINE ID 2 77 -6 4 1078 30 0 0 61 chr1 64704919 64704968 -132490464 + AT_rich Low_complexity Low_complexity 1 46 0 4 1078 203 169 31 0 chr1 64705055 64705120 -132490312 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 4 1078 2355 169 144 11 chr1 64706168 64706634 -132488798 + RLTR11A LTR ERVK 1 528 0 4 1078 4418 173 99 14 chr1 64707818 64708815 -132486617 + Lx6 LINE L1 6067 7148 -312 4 1078 1733 212 140 17 chr1 64708847 64709269 -132486163 - RMER1C Other Other -154 1188 715 4 1078 1886 143 25 45 chr1 64709270 64709629 -132485803 - ORR1B1 LTR MaLR -1 393 42 4 1078 415 219 0 0 chr1 64709637 64709710 -132485722 - RMER1C Other Other -809 533 461 4 1078 540 299 59 47 chr1 64709770 64710023 -132485409 - RMER1B Other Other -172 894 639 4 1078 245 111 44 0 chr1 64710113 64710158 -132485274 + T-rich Low_complexity Low_complexity 3 49 0 4 1078 923 40 16 0 chr1 64710158 64710282 -132485150 - B1_Mus1 SINE Alu 0 148 23 4 1078 828 151 0 7 chr1 64710282 64710422 -132485010 + Lx6 LINE L1 7303 7441 -19 4 1078 8347 55 3 7 chr1 64710436 64712179 -132483253 - L1Md_F2 LINE L1 -14 6568 4835 4 1078 195 42 0 0 chr1 64712228 64712252 -132483180 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 4 1078 421 300 143 70 chr1 64713022 64713182 -132482250 - MLT1A LTR MaLR -17 357 169 4 1078 243 0 0 0 chr1 64713182 64713209 -132482223 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1078 421 300 143 70 chr1 64713209 64713320 -132482112 - MLT1A LTR MaLR -206 168 66 4 1078 497 310 59 11 chr1 64714421 64714607 -132480825 + B3A SINE B2 1 195 -3 4 1078 255 325 138 17 chr1 64715438 64715554 -132479878 + RSINE1 SINE B4 36 165 0 4 1078 571 352 88 58 chr1 64716039 64716570 -132478862 + MLT2B3 LTR ERVL 4 550 -4 4 1078 1016 174 28 52 chr1 64717046 64717258 -132478174 + B3 SINE B2 5 211 -5 4 1078 1287 197 97 12 chr1 64717320 64717649 -132477783 + ORR1D1 LTR MaLR 10 366 -8 4 1078 380 276 9 28 chr1 64717649 64717757 -132477675 + B4 SINE B4 186 291 -1 4 1078 251 280 84 8 chr1 64717813 64717932 -132477500 - L1M5 LINE L1 -304 5820 5693 4 1078 1250 245 75 9 chr1 64718841 64719174 -132476258 - MTD LTR MaLR -12 407 53 4 1078 285 51 0 0 chr1 64719475 64719514 -132475918 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1078 188 273 0 35 chr1 64720029 64720086 -132475346 + MIRb SINE MIR 21 75 -193 4 1078 3398 250 89 46 chr1 64720898 64721871 -132473561 + Lx8 LINE L1 6332 7331 -142 4 1078 447 35 0 0 chr1 64721871 64721928 -132473504 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1078 3398 250 89 46 chr1 64721928 64722049 -132473383 + Lx8 LINE L1 7332 7473 0 4 1078 460 212 177 69 chr1 64723242 64723445 -132471987 + MamRep4096 DNA hAT? 3 227 -199 4 1078 216 286 0 0 chr1 64723445 64723494 -132471938 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 4 1078 1160 245 89 6 chr1 64723667 64724016 -132471416 - MTEa LTR MaLR 0 379 2 4 1078 484 281 28 21 chr1 64724334 64724476 -132470956 + RSINE1 SINE B4 8 150 -15 4 1078 285 163 51 138 chr1 64725202 64725314 -132470118 - PB1D10 SINE Alu -40 109 2 4 1078 697 251 45 106 chr1 64725656 64725901 -132469531 - MLT1B LTR MaLR -82 308 79 4 1078 319 212 44 16 chr1 64725899 64725994 -132469438 + PB1D10 SINE Alu 43 147 -2 4 1078 336 257 21 57 chr1 64726008 64726117 -132469315 - MLT1B LTR MaLR -356 111 8 4 1078 300 340 52 7 chr1 64726179 64726333 -132469099 + L2a LINE L2 3266 3426 0 4 1078 192 40 0 0 chr1 64726351 64726376 -132469056 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1078 407 223 175 53 chr1 64727606 64727795 -132467637 - LTR84b LTR ERVL -449 312 101 4 1078 207 0 0 0 chr1 64728091 64728114 -132467318 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1078 287 210 155 36 chr1 64728218 64728302 -132467130 + PB1D10 SINE Alu 13 106 -11 4 1078 1074 94 65 0 chr1 64728610 64728748 -132466684 + B1_Mus2 SINE Alu 1 147 0 4 1078 957 83 0 0 chr1 64728750 64728882 -132466550 + (GAGAA)n Simple_repeat Simple_repeat 4 135 0 4 1078 390 205 23 100 chr1 64729222 64729250 -132466182 + MT2B LTR ERVL 138 155 -446 4 1078 843 52 78 0 chr1 64729250 64729365 -132466067 + B1_Mus1 SINE Alu 2 125 -23 4 1078 777 58 0 0 chr1 64729367 64729470 -132465962 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 4 1078 245 271 28 28 chr1 64730241 64730313 -132465119 - MamRep1879 DNA hAT? -102 114 43 4 1078 831 267 10 58 chr1 64730687 64730894 -132464538 + B3A SINE B2 1 197 -1 4 1078 1305 100 26 21 chr1 64730895 64731089 -132464343 + B2_Mm2 SINE B2 1 195 0 4 1078 818 254 59 15 chr1 64731091 64731295 -132464137 + B3 SINE B2 2 214 -2 4 1078 1336 100 15 45 chr1 64731694 64731893 -132463539 + B2_Mm2 SINE B2 3 195 0 4 1078 269 250 66 0 chr1 64732320 64732396 -132463036 - Charlie4z DNA MER1_type -6 161 81 4 1078 283 289 23 83 chr1 64732437 64732569 -132462863 - ORR1E LTR MaLR -7 352 229 4 1078 275 268 12 24 chr1 64732604 64732688 -132462744 + GA-rich Low_complexity Low_complexity 5 87 0 4 1078 370 325 52 11 chr1 64732688 64732862 -132462570 - ORR1E LTR MaLR -168 191 11 4 1078 278 341 66 0 chr1 64733249 64733340 -132462092 + MLT1J LTR MaLR 112 208 -304 4 1078 198 167 0 0 chr1 64733364 64733400 -132462032 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1078 22 0 0 0 chr1 64733692 64733714 -132461718 + AT_rich Low_complexity Low_complexity 1 22 0 4 1078 422 254 119 0 chr1 64734331 64734457 -132460975 + MER2 DNA MER2_type 9 149 -196 4 1078 297 0 0 0 chr1 64734462 64734495 -132460937 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1078 189 0 0 0 chr1 64734494 64734515 -132460917 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1078 619 301 39 22 chr1 64734515 64734695 -132460737 + MER2 DNA MER2_type 160 342 -3 4 1078 1984 127 107 176 chr1 64734698 64735148 -132460284 - MTC LTR MaLR 0 421 3 4 1078 225 0 0 0 chr1 64735672 64735697 -132459735 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1078 1376 96 21 5 chr1 64735957 64736146 -132459286 + B2_Mm2 SINE B2 2 193 -2 4 1078 215 262 28 18 chr1 64737511 64737620 -132457812 + G-rich Low_complexity Low_complexity 3 112 0 4 1078 234 105 17 50 chr1 64737566 64737626 -132457806 + (CGGG)n Simple_repeat Simple_repeat 1 58 0 4 1078 21 0 0 0 chr1 64737795 64737816 -132457616 + GC_rich Low_complexity Low_complexity 1 21 0 4 1078 21 0 0 0 chr1 64739024 64739045 -132456387 + AT_rich Low_complexity Low_complexity 1 21 0 4 1078 216 325 251 0 chr1 64741700 64741863 -132453569 - L2 LINE L2 -544 2875 2672 4 1078 361 320 63 52 chr1 64742012 64742203 -132453229 + L1MC LINE L1 5466 5658 -2224 4 1078 1146 88 0 51 chr1 64742260 64742416 -132453016 + B1_Mus1 SINE Alu 1 148 0 4 1078 189 0 0 0 chr1 64742674 64742695 -132452737 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1078 26 50 0 0 chr1 64743223 64743263 -132452169 + AT_rich Low_complexity Low_complexity 1 40 0 4 1078 259 200 138 0 chr1 64744053 64744133 -132451299 - B4A SINE B4 -201 91 1 4 1078 213 39 0 0 chr1 64744832 64744858 -132450574 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1078 216 281 0 50 chr1 64744935 64744995 -132450437 - ID4_ SINE ID -25 58 2 4 1078 682 315 16 16 chr1 64745564 64745751 -132449681 - B3A SINE B2 -2 196 10 4 1078 211 156 0 0 chr1 64745832 64745864 -132449568 - ID4_ SINE ID 0 83 52 4 1078 409 252 0 29 chr1 64746212 64746314 -132449118 + PB1D10 SINE Alu 17 115 -2 4 1078 744 223 42 58 chr1 64746475 64746665 -132448767 - B3A SINE B2 -10 188 2 4 1078 198 0 0 0 chr1 64748173 64748195 -132447237 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 4 1078 1072 223 5 5 chr1 64749228 64749426 -132446006 - B3A SINE B2 0 198 1 4 1079 189 74 0 0 chr1 64750880 64750907 -132444525 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1079 338 276 112 19 chr1 64751233 64751340 -132444092 - PB1D10 SINE Alu 0 117 1 4 1079 720 227 85 6 chr1 64751493 64751657 -132443775 + B3 SINE B2 2 178 -38 4 1079 303 28 0 0 chr1 64752606 64752642 -132442790 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1079 1429 186 146 61 chr1 64752676 64753053 -132442379 - MTD LTR MaLR -10 409 1 4 1079 181 303 43 43 chr1 64753761 64753831 -132441601 + L4 LINE RTE 99 167 -1862 4 1079 359 260 13 0 chr1 64753831 64753908 -132441524 - ID4_ SINE ID -3 80 3 4 1079 181 303 43 43 chr1 64753908 64753930 -132441502 + L4 LINE RTE 168 191 -1838 4 1079 34 42 0 0 chr1 64754074 64754122 -132441310 + AT_rich Low_complexity Low_complexity 1 48 0 4 1079 1201 55 21 0 chr1 64756221 64756366 -132439066 + B1_Mus1 SINE Alu 1 148 0 4 1079 663 266 0 7 chr1 64756441 64756581 -132438851 + ID_B1 SINE B4 86 224 0 4 1079 412 169 399 68 chr1 64756586 64756719 -132438713 + B2_Mm2 SINE B2 2 178 -17 4 1079 21 36 0 0 chr1 64758170 64758198 -132437234 + AT_rich Low_complexity Low_complexity 1 28 0 4 1079 380 258 115 32 chr1 64758750 64758906 -132436526 - Charlie1a DNA MER1_type -736 719 551 4 1079 233 203 183 28 chr1 64758970 64759041 -132436391 - Charlie1a DNA MER1_type -1099 356 275 4 1079 189 0 0 0 chr1 64760445 64760466 -132434966 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1079 570 287 62 7 chr1 64760849 64760993 -132434439 + RSINE1 SINE B4 10 161 -4 4 1079 394 120 27 0 chr1 64762339 64762414 -132433018 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1079 624 157 125 8 chr1 64762702 64762830 -132432602 + URR1B DNA MER1_type 83 225 0 4 1079 180 271 124 53 chr1 64762967 64763080 -132432352 - L2 LINE L2 -574 2845 2725 4 1079 256 156 18 74 chr1 64764038 64764102 -132431330 + B1F SINE Alu 90 148 -1 4 1079 1096 83 0 40 chr1 64765001 64765152 -132430280 - B1_Mus2 SINE Alu 0 147 3 4 1079 216 158 0 0 chr1 64767087 64767125 -132428307 + A-rich Low_complexity Low_complexity 2 39 0 4 1079 201 39 0 0 chr1 64767633 64767659 -132427773 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1079 814 199 220 6 chr1 64768607 64768784 -132426648 + B3 SINE B2 1 215 -1 5 1079 525 298 35 59 chr1 64768958 64769161 -132426271 + B3A SINE B2 1 198 0 5 1079 29 60 0 0 chr1 64769198 64769248 -132426184 + AT_rich Low_complexity Low_complexity 1 50 0 5 1079 749 306 78 22 chr1 64769555 64769826 -132425606 - B4A SINE B4 0 292 7 5 1079 650 202 31 14 chr1 64770530 64770665 -132424767 - ID_B1 SINE B4 -4 220 80 5 1079 414 247 0 12 chr1 64770788 64770870 -132424562 - ID4 SINE ID -2 81 1 5 1079 879 186 118 57 chr1 64772364 64772575 -132422857 - URR1A DNA MER1_type -2 224 1 5 1079 545 275 63 0 chr1 64773156 64773298 -132422134 + B3A SINE B2 20 170 -28 5 1079 688 181 60 0 chr1 64773723 64773856 -132421576 - B1F2 SINE Alu -2 147 7 5 1079 254 194 172 31 chr1 64775335 64775399 -132420033 + L1MD3 LINE L1 7730 7802 -193 5 1079 226 203 0 169 chr1 64775425 64775502 -132419930 + MT2B LTR ERVL 171 234 -367 5 1079 551 115 161 42 chr1 64775440 64775558 -132419874 + B1_Mur4 SINE Alu 19 150 0 5 1079 706 81 68 0 chr1 64775682 64775799 -132419633 + B1_Mus1 SINE Alu 1 130 -20 5 1079 245 253 11 75 chr1 64775720 64775814 -132419618 + RLTR25A LTR ERVK 525 612 -491 5 1079 192 316 66 66 chr1 64776011 64776194 -132419238 - MIR SINE MIR -67 195 13 5 1079 193 57 57 0 chr1 64777723 64777758 -132417674 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1079 21 0 0 0 chr1 64778604 64778625 -132416807 + AT_rich Low_complexity Low_complexity 1 21 0 5 1079 288 0 0 0 chr1 64780892 64780924 -132414508 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1079 22 0 0 0 chr1 64780963 64780985 -132414447 + AT_rich Low_complexity Low_complexity 1 22 0 5 1079 220 213 16 16 chr1 64784364 64784426 -132411006 + (CCCCG)n Simple_repeat Simple_repeat 5 66 0 5 1079 21 0 0 0 chr1 64784479 64784500 -132410932 + GC_rich Low_complexity Low_complexity 1 21 0 5 1079 374 274 26 9 chr1 64786251 64786365 -132409067 + PB1D10 SINE Alu 2 117 0 5 1079 927 214 47 28 chr1 64786473 64786685 -132408747 + B3 SINE B2 1 216 0 5 1079 367 194 44 44 chr1 64786850 64786963 -132408469 + L1MA8 LINE L1 6061 6173 -118 5 1079 762 256 76 19 chr1 64786963 64787174 -132408258 + ID_B1 SINE B4 2 224 0 5 1079 305 262 40 131 chr1 64787174 64787318 -132408114 + L1MA8 LINE L1 6178 6289 -23 5 1079 688 246 210 0 chr1 64787327 64787551 -132407881 + B4A SINE B4 2 272 -20 5 1079 249 57 0 0 chr1 64787642 64787677 -132407755 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1079 1161 75 0 13 chr1 64787677 64787815 -132407617 - B1_Mm SINE Alu -9 138 1 5 1079 321 263 0 50 chr1 64787924 64788004 -132407428 - ID4 SINE ID -6 77 2 5 1079 324 307 183 35 chr1 64788044 64788186 -132407246 - RSINE1 SINE B4 0 165 3 5 1079 189 94 0 0 chr1 64788213 64788245 -132407187 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 5 1079 206 32 32 0 chr1 64788279 64788310 -132407122 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1079 595 165 172 8 chr1 64788322 64788450 -132406982 - B1_Mur1 SINE Alu 0 149 1 5 1079 292 315 43 35 chr1 64788875 64788990 -132406442 - PB1D10 SINE Alu -1 116 1 5 1079 185 250 0 0 chr1 64789911 64789947 -132405485 - MER5B DNA MER1_type -18 160 125 5 1079 182 264 56 19 chr1 64790037 64790091 -132405341 - MER5B DNA MER1_type -122 56 1 5 1079 384 312 72 7 chr1 64790321 64790460 -132404972 - MIRb SINE MIR -19 249 102 5 1079 297 0 0 0 chr1 64790488 64790521 -132404911 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 5 1079 636 219 94 23 chr1 64790867 64791060 -132404372 - Lx8 LINE L1 -303 7170 6955 5 1079 332 311 69 88 chr1 64791286 64791598 -132403834 - LTR33B LTR ERVL -9 494 95 5 1079 252 0 0 0 chr1 64791603 64791631 -132403801 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1079 376 250 0 0 chr1 64792031 64792107 -132403325 - ID4 SINE ID 0 83 8 5 1079 266 284 189 0 chr1 64792116 64792211 -132403221 - MLT1A1 LTR MaLR -40 368 256 5 1079 398 146 0 10 chr1 64792218 64792315 -132403117 + GA-rich Low_complexity Low_complexity 1 96 0 5 1079 253 265 155 12 chr1 64792348 64792432 -132403000 - MLT1A1 LTR MaLR -292 116 21 5 1079 804 244 141 65 chr1 64792870 64793133 -132402299 + B4A SINE B4 6 288 -4 5 1079 425 298 55 60 chr1 64793673 64793699 -132401733 + MTEa LTR MaLR 1 33 -346 5 1079 3339 18 39 0 chr1 64793699 64794080 -132401352 - MTA_Mm LTR MaLR 0 396 1 5 1079 425 298 55 60 chr1 64794080 64794253 -132401179 + MTEa LTR MaLR 34 199 -180 5 1079 240 245 42 57 chr1 64794409 64794509 -132400923 + MTEa LTR MaLR 278 366 -13 5 1079 728 353 96 65 chr1 64794654 64794779 -132400653 + MLT1G LTR MaLR 5 127 -468 5 1079 405 0 0 0 chr1 64794779 64794824 -132400608 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1079 777 342 55 38 chr1 64794824 64795271 -132400161 + MLT1G LTR MaLR 128 594 -1 5 1079 307 316 88 55 chr1 64795858 64796039 -132399393 + MIR3 SINE MIR 16 202 -6 5 1079 228 281 121 12 chr1 64796111 64796194 -132399238 - MamRep434 DNA TcMar -79 347 256 5 1079 306 238 25 0 chr1 64796572 64796652 -132398780 - ID4_ SINE ID 0 83 2 5 1079 408 224 29 48 chr1 64796668 64796771 -132398661 - PB1D10 SINE Alu -7 110 10 5 1079 1607 37 5 0 chr1 64796989 64797178 -132398254 - B2_Mm1a SINE B2 -2 191 2 5 1079 404 308 42 26 chr1 64797629 64797819 -132397613 - L1MC2 LINE L1 -29 6315 6123 5 1079 847 244 255 46 chr1 64797822 64798271 -132397161 - L1MC2 LINE L1 -591 5742 5182 5 1079 826 221 104 16 chr1 64798271 64798464 -132396968 - B3 SINE B2 -5 211 2 5 1079 321 332 79 93 chr1 64798464 64798566 -132396866 - L1MC2 LINE L1 -962 5181 5077 5 1079 396 0 0 0 chr1 64798594 64798638 -132396794 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1079 672 239 22 0 chr1 64798682 64798816 -132396616 + B1F2 SINE Alu 5 141 -8 5 1079 23 0 0 0 chr1 64799134 64799157 -132396275 + AT_rich Low_complexity Low_complexity 1 23 0 5 1079 227 324 13 13 chr1 64799375 64799450 -132395982 + MTE2b LTR MaLR 294 368 -11 5 1079 986 121 0 13 chr1 64799523 64799674 -132395758 + B1_Mur3 SINE Alu 1 149 0 5 1079 249 108 0 0 chr1 64800116 64800153 -132395279 + (CTG)n Simple_repeat Simple_repeat 2 38 0 5 1079 479 224 11 27 chr1 64800448 64800572 -132394860 - B1_Mur3 SINE Alu 0 117 2 5 1079 1352 241 55 44 chr1 64800599 64800929 -132394503 - Lx6 LINE L1 0 7460 7126 5 1079 1344 146 27 0 chr1 64800929 64801148 -132394284 + URR1B DNA MER1_type 1 225 0 5 1079 1352 241 55 44 chr1 64801148 64801200 -132394232 - Lx6 LINE L1 -335 7125 7074 5 1079 378 286 9 35 chr1 64801561 64801677 -132393755 - MER5B DNA MER1_type -14 164 52 5 1079 649 224 20 7 chr1 64801703 64801851 -132393581 - L1ME3A LINE L1 0 6173 6024 5 1079 537 58 0 0 chr1 64801895 64801964 -132393468 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1079 653 222 35 43 chr1 64802027 64802168 -132393264 - B1F1 SINE Alu 0 149 10 5 1079 186 329 37 37 chr1 64802388 64802470 -132392962 + L4 LINE RTE 250 331 -1698 5 1079 336 353 45 31 chr1 64802552 64802774 -132392658 - MIR SINE MIR -19 243 19 5 1079 1143 43 0 0 chr1 64803735 64803876 -132391556 + (TTCTCC)n Simple_repeat Simple_repeat 3 143 0 5 1079 332 335 159 55 chr1 64804239 64804697 -132390735 + MLT1H LTR MaLR 31 536 -13 5 1079 296 239 59 84 chr1 64805055 64805076 -132390356 + MT2B2 LTR ERVL 147 164 -420 5 1079 370 290 107 4 chr1 64805076 64805207 -132390225 + B1_Mur1 SINE Alu 1 145 -4 5 1079 193 221 56 56 chr1 64805430 64805502 -132389930 + L3 LINE CR1 736 807 -3682 5 1079 217 286 0 0 chr1 64805475 64805524 -132389908 - L2c LINE L2 -35 3352 3304 5 1079 2127 151 34 34 chr1 64806117 64806495 -132388937 - ORR1C1 LTR MaLR 0 378 1 5 1079 300 290 0 0 chr1 64806635 64806697 -132388735 + ID_B1 SINE B4 91 152 -72 5 1079 561 320 0 0 chr1 64806725 64806850 -132388582 + RSINE1 SINE B4 21 145 -20 5 1079 1563 38 38 0 chr1 64807272 64807457 -132387975 + B2_Mm1a SINE B2 2 193 0 5 1079 210 71 0 0 chr1 64807471 64807499 -132387933 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1079 1984 127 9 62 chr1 64807579 64807870 -132387562 + ORR1A4 LTR MaLR 3 286 -43 5 1079 1581 16 43 0 chr1 64807870 64808054 -132387378 + B2_Mm1a SINE B2 1 192 -1 5 1079 1984 127 9 62 chr1 64808054 64808099 -132387333 + ORR1A4 LTR MaLR 287 321 -8 5 1079 188 365 31 31 chr1 64808319 64808449 -132386983 - L2c LINE L2 -418 3001 2872 5 1079 268 246 35 0 chr1 64808827 64808884 -132386548 + ID4_ SINE ID 14 72 -11 5 1079 215 179 26 0 chr1 64809219 64809258 -132386174 + MIR SINE MIR 111 150 -58 5 1079 385 303 39 146 chr1 64809365 64809570 -132385862 + MER2 DNA MER2_type 136 318 -27 5 1079 1726 189 51 30 chr1 64809598 64809802 -132385630 - ORR1C2 LTR MaLR 0 384 178 5 1079 840 122 0 0 chr1 64809802 64809966 -132385466 + (GA)n Simple_repeat Simple_repeat 2 165 0 5 1079 1726 189 51 30 chr1 64809966 64810131 -132385301 - ORR1C2 LTR MaLR -207 177 7 5 1079 706 249 93 11 chr1 64810273 64810456 -132384976 - B3A SINE B2 0 198 1 5 1079 288 376 101 0 chr1 64810458 64810567 -132384865 - PB1D7 SINE Alu 0 120 1 5 1079 223 340 0 20 chr1 64810591 64810639 -132384793 + polypyrimidine Low_complexity Low_complexity 53 100 0 5 1079 299 236 180 0 chr1 64810639 64810728 -132384704 - PB1D10 SINE Alu -11 106 2 5 1079 223 340 0 20 chr1 64810728 64810778 -132384654 + polypyrimidine Low_complexity Low_complexity 5 52 0 5 1079 1230 48 0 0 chr1 64810939 64811086 -132384346 + B1_Mus2 SINE Alu 1 147 0 5 1079 198 103 0 0 chr1 64811105 64811134 -132384298 + (GGA)n Simple_repeat Simple_repeat 3 31 0 5 1079 332 317 40 30 chr1 64811142 64811372 -132384060 - MER31A LTR ERV1 -1 465 238 5 1079 757 228 175 18 chr1 64811372 64811683 -132383749 + ORR1D1 LTR MaLR 1 384 0 5 1079 291 272 110 45 chr1 64811715 64811869 -132383563 - MER31A LTR ERV1 -302 164 1 5 1079 502 252 164 15 chr1 64812000 64812260 -132383172 - MER33 DNA MER1_type -1 323 31 5 1079 745 239 26 74 chr1 64812489 64812679 -132382753 - B3A SINE B2 -10 188 8 5 1079 307 282 280 7 chr1 64812684 64812821 -132382611 - B4 SINE B4 -116 176 2 5 1079 675 261 58 19 chr1 64812827 64813034 -132382398 - ID_B1 SINE B4 -8 216 2 6 1079 217 315 0 0 chr1 64814041 64814095 -132381337 - L2a LINE L2 -6 3420 3367 6 1079 1066 103 14 0 chr1 64814231 64814376 -132381056 - B1_Mus1 SINE Alu -1 147 1 6 1079 182 149 78 78 chr1 64814893 64814944 -132380488 - L3 LINE CR1 -2362 2127 2077 6 1079 8629 33 1 2 chr1 64815003 64816067 -132379365 - L1Md_F2 LINE L1 -1 6581 5519 6 1079 714 306 20 5 chr1 64816176 64816373 -132379059 + B4A SINE B4 1 200 -92 6 1079 309 26 0 0 chr1 64816373 64816411 -132379021 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1079 204 67 0 0 chr1 64817410 64817440 -132377992 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1079 658 213 148 123 chr1 64817528 64817812 -132377620 - B4A SINE B4 0 292 2 6 1079 357 271 118 8 chr1 64818627 64818746 -132376686 + ID_B1 SINE B4 91 222 -2 6 1079 304 280 133 15 chr1 64819535 64819703 -132375729 - MIRb SINE MIR -23 245 55 6 1079 685 259 165 48 chr1 64821055 64821371 -132374061 - ORR1E LTR MaLR -6 353 1 6 1079 24 32 0 0 chr1 64821595 64821626 -132373806 + AT_rich Low_complexity Low_complexity 1 31 0 6 1079 481 276 78 7 chr1 64821986 64822128 -132373304 - MER3 DNA MER1_type -54 155 4 6 1079 183 350 0 48 chr1 64822364 64822427 -132373005 - L2c LINE L2 -67 3320 3261 6 1079 239 274 113 21 chr1 64822592 64822689 -132372743 - MLT1A1 LTR MaLR 0 408 303 6 1079 327 303 81 50 chr1 64822747 64822907 -132372525 - MLT1A1 LTR MaLR -243 165 1 6 1079 315 276 11 33 chr1 64822909 64822999 -132372433 - MER45A DNA Tip100 -24 154 67 6 1079 338 248 62 23 chr1 64823230 64823358 -132372074 + B4A SINE B4 1 133 -159 6 1079 466 221 38 25 chr1 64823362 64823520 -132371912 + Lx9 LINE L1 7478 7637 -7 6 1079 352 177 0 151 chr1 64823530 64823623 -132371809 + B4A SINE B4 214 292 0 6 1079 513 231 0 0 chr1 64823644 64823817 -132371615 + (CA)n Simple_repeat Simple_repeat 2 174 0 6 1079 483 242 0 0 chr1 64823838 64824111 -132371321 + (CA)n Simple_repeat Simple_repeat 1 273 0 6 1079 744 196 21 14 chr1 64825223 64825363 -132370069 + ID_B1 SINE B4 81 221 -3 6 1079 186 43 0 0 chr1 64825363 64825386 -132370046 + (CAG)n Simple_repeat Simple_repeat 1 23 0 6 1079 1289 122 10 15 chr1 64827041 64827241 -132368191 - URR1B DNA MER1_type 0 225 27 6 1079 808 164 28 14 chr1 64827291 64827433 -132367999 + B1_Mus2 SINE Alu 2 145 -2 6 1079 3240 97 26 0 chr1 64827512 64828096 -132367336 + L1_Mus3 LINE L1 6170 6638 0 6 1079 22 0 0 0 chr1 64828194 64828216 -132367216 + GC_rich Low_complexity Low_complexity 1 22 0 6 1079 241 294 47 95 chr1 64828604 64828773 -132366659 - MIRb SINE MIR -21 247 87 6 1079 479 280 94 58 chr1 64829036 64829207 -132366225 - MTEa LTR MaLR -202 177 1 6 1079 263 187 103 39 chr1 64829324 64829402 -132366030 - MER5A DNA MER1_type -106 83 1 6 1079 681 259 80 35 chr1 64829728 64829928 -132365504 + ID_B1 SINE B4 1 209 -15 6 1079 215 235 20 0 chr1 64830731 64830782 -132364650 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1079 753 296 6 100 chr1 64830790 64831101 -132364331 - B4A SINE B4 -10 282 1 6 1079 217 279 16 16 chr1 64831334 64831396 -132364036 + ID4 SINE ID 14 75 -8 6 1079 1208 29 0 0 chr1 64832606 64832742 -132362690 + B1_Mus1 SINE Alu 1 136 -12 6 1079 248 0 0 30 chr1 64832745 64832778 -132362654 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1079 276 209 28 56 chr1 64833672 64833743 -132361689 - ID4 SINE ID -14 69 1 6 1079 405 278 0 61 chr1 64833754 64833869 -132361563 - PB1 SINE Alu -8 119 12 6 1079 365 250 64 187 chr1 64833869 64833941 -132361491 - ID_B1 SINE B4 -9 215 52 6 1079 186 324 14 14 chr1 64833985 64834057 -132361375 - MER5B DNA MER1_type -42 136 65 6 1079 359 284 37 15 chr1 64834713 64834732 -132360700 - ID_B1 SINE B4 0 224 86 6 1079 580 181 34 8 chr1 64834732 64834849 -132360583 - B1_Mur2 SINE Alu -25 124 5 6 1079 1004 223 24 5 chr1 64835355 64835562 -132359870 + B3 SINE B2 2 212 -4 6 1079 234 0 0 0 chr1 64837317 64837343 -132358089 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1079 41 48 0 0 chr1 64840410 64840472 -132354960 + AT_rich Low_complexity Low_complexity 1 62 0 6 1079 540 231 9 0 chr1 64840479 64840587 -132354845 + PB1D10 SINE Alu 1 109 -8 6 1079 1079 140 84 0 chr1 64843178 64843357 -132352075 + B2_Mm2 SINE B2 2 195 0 6 1079 348 262 76 15 chr1 64843383 64843515 -132351917 + MLT1B LTR MaLR 246 385 -5 6 1079 304 310 34 20 chr1 64843520 64843668 -132351764 + MIRb SINE MIR 93 242 -26 6 1079 224 273 43 60 chr1 64843741 64843858 -132351574 - MIR SINE MIR -55 153 39 6 1079 958 166 14 0 chr1 64844734 64844879 -132350553 + B1_Mur1 SINE Alu 2 148 -1 6 1079 639 262 165 0 chr1 64847229 64847435 -132347997 + B4 SINE B4 51 290 -2 6 1079 606 222 119 26 chr1 64847754 64847948 -132347484 - MER20 DNA MER1_type -7 212 1 6 1079 1179 14 0 53 chr1 64848125 64848275 -132347157 + B1_Mus1 SINE Alu 1 142 -6 6 1079 228 288 118 71 chr1 64848366 64848493 -132346939 + ID_B1 SINE B4 9 141 -83 6 1079 180 318 99 9 chr1 64848873 64848984 -132346448 + MIR3 SINE MIR 12 132 -76 6 1079 201 129 0 0 chr1 64850514 64850545 -132344887 + (TGG)n Simple_repeat Simple_repeat 2 32 0 6 1079 357 24 0 0 chr1 64852656 64852698 -132342734 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 6 1079 483 33 0 0 chr1 64852698 64852758 -132342674 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 6 1079 396 0 0 0 chr1 64854339 64854383 -132341049 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 6 1079 853 184 201 0 chr1 64854426 64854605 -132340827 - B3 SINE B2 0 216 2 6 1079 27 49 0 0 chr1 64854728 64854769 -132340663 + AT_rich Low_complexity Low_complexity 1 41 0 6 1079 716 156 52 5 chr1 64856329 64856469 -132338963 - B1_Mur1 SINE Alu 0 149 9 6 1079 210 143 0 0 chr1 64857181 64857216 -132338216 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 1079 596 198 25 8 chr1 64857226 64857348 -132338084 - B1_Mur1 SINE Alu -1 148 25 6 1079 349 248 77 0 chr1 64858357 64858474 -132336958 + Charlie2b DNA MER1_type 183 308 -2474 6 1079 611 259 30 42 chr1 64858726 64858891 -132336541 + RSINE1 SINE B4 3 165 0 6 1079 486 0 0 0 chr1 64859466 64859520 -132335912 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1079 243 301 0 12 chr1 64859685 64859769 -132335663 - B4 SINE B4 -208 84 2 6 1079 378 288 45 50 chr1 64859852 64860053 -132335379 - L1MC5 LINE L1 -37 7924 7725 6 1079 834 259 147 105 chr1 64860577 64861194 -132334238 + L1MC3 LINE L1 6708 7365 -420 6 1079 320 288 28 21 chr1 64861194 64861336 -132334096 - B1F SINE Alu -6 143 1 6 1079 834 259 147 105 chr1 64861336 64861720 -132333712 + L1MC3 LINE L1 7366 7751 -34 6 1079 560 236 288 30 chr1 64861908 64862269 -132333163 - L1MC2 LINE L1 -1678 6107 5654 6 1079 210 171 24 0 chr1 64862343 64862384 -132333048 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1079 824 296 28 24 chr1 64862386 64862677 -132332755 - B4A SINE B4 0 292 1 6 1079 620 284 73 16 chr1 64862678 64862993 -132332439 - L1MC2 LINE L1 -3321 2825 2493 6 1079 186 43 0 0 chr1 64863007 64863030 -132332402 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1079 536 294 117 42 chr1 64863188 64863344 -132332088 - L1M4 LINE L1 -2985 3161 2999 6 1079 582 257 59 83 chr1 64863344 64863548 -132331884 + RMER30 DNA MER1_type 1 199 -3 6 1079 536 294 117 42 chr1 64863548 64863817 -132331615 - L1M4 LINE L1 -3148 2998 2704 6 1079 417 277 246 6 chr1 64863890 64864235 -132331197 - L1MB5 LINE L1 -68 6106 5679 6 1079 24 32 0 0 chr1 64865015 64865046 -132330386 + AT_rich Low_complexity Low_complexity 1 31 0 6 1079 22 0 0 0 chr1 64865187 64865209 -132330223 + AT_rich Low_complexity Low_complexity 1 22 0 6 1079 4506 75 3 0 chr1 64865704 64866287 -132329145 - L1_Mus4 LINE L1 -9 6627 6043 6 1079 249 215 15 15 chr1 64868043 64868109 -132327323 - RLTR28B LTR ERVL -76 405 340 6 1079 24 0 0 0 chr1 64868734 64868758 -132326674 + AT_rich Low_complexity Low_complexity 1 24 0 6 1079 267 247 130 51 chr1 64869018 64869285 -132326147 - L1MB7 LINE L1 0 6184 5891 6 1079 1170 48 0 14 chr1 64869412 64869560 -132325872 - B1_Mus1 SINE Alu -1 147 2 6 1079 495 0 0 0 chr1 64871293 64871348 -132324084 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1079 1200 74 0 33 chr1 64871348 64871529 -132323903 - B2_Mm2 SINE B2 -15 180 6 6 1079 282 286 14 0 chr1 64871529 64871599 -132323833 - PB1D10 SINE Alu -32 85 15 6 1079 277 311 89 0 chr1 64871794 64871929 -132323503 + MIRb SINE MIR 44 190 -78 6 1079 358 181 76 40 chr1 64873814 64873921 -132321511 + PB1D7 SINE Alu 10 120 0 6 1079 306 106 0 0 chr1 64875016 64875063 -132320369 + (TATG)n Simple_repeat Simple_repeat 4 50 0 6 1079 491 125 19 19 chr1 64875064 64875170 -132320262 + (CAT)n Simple_repeat Simple_repeat 2 107 0 6 1079 457 207 133 18 chr1 64875170 64875283 -132320149 - B1_Mur1 SINE Alu -23 126 1 6 1079 204 158 0 0 chr1 64875554 64875592 -132319840 + GA-rich Low_complexity Low_complexity 1 38 0 6 1079 191 286 17 155 chr1 64875829 64875945 -132319487 + MIR3 SINE MIR 108 207 -1 6 1079 23 68 0 0 chr1 64876886 64876930 -132318502 + AT_rich Low_complexity Low_complexity 1 44 0 6 1079 203 200 20 0 chr1 64879648 64879698 -132315734 + T-rich Low_complexity Low_complexity 2 52 0 6 1079 1187 35 14 0 chr1 64880418 64880563 -132314869 + B1_Mm SINE Alu 1 147 0 6 1079 240 59 0 0 chr1 64880565 64880599 -132314833 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1080 850 157 29 0 chr1 64881377 64881517 -132313915 + B1_Mur4 SINE Alu 1 144 -6 6 1080 22 56 0 0 chr1 64881855 64881891 -132313541 + AT_rich Low_complexity Low_complexity 1 36 0 7 1080 26 0 0 0 chr1 64882058 64882084 -132313348 + AT_rich Low_complexity Low_complexity 1 26 0 7 1080 397 222 33 46 chr1 64884061 64884212 -132311220 - Charlie18a DNA MER1_type -72 270 122 7 1080 468 0 0 0 chr1 64884283 64884335 -132311097 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1080 702 326 85 4 chr1 64884380 64884626 -132310806 - B4 SINE B4 -24 268 3 7 1080 241 329 54 12 chr1 64884750 64884916 -132310516 - MER113 DNA MER1_type 0 521 349 7 1080 898 256 153 21 chr1 64886863 64887190 -132308242 + ORR1D2 LTR MaLR 1 370 0 7 1080 262 200 24 157 chr1 64888289 64888372 -132307060 - ID4_ SINE ID -10 73 2 7 1080 273 288 0 0 chr1 64888454 64888513 -132306919 - PB1D7 SINE Alu -59 61 3 7 1080 754 149 0 0 chr1 64889691 64889812 -132305620 + B1_Mur2 SINE Alu 17 137 -12 7 1080 180 0 0 0 chr1 64890099 64890119 -132305313 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1080 252 164 18 0 chr1 64890155 64890210 -132305222 - L1MB3 LINE L1 -17 6166 6111 7 1080 513 258 154 0 chr1 64892118 64892300 -132303132 + MIR SINE MIR 33 242 -20 7 1080 182 343 0 0 chr1 64892360 64892427 -132303005 - MIR3 SINE MIR -45 163 97 7 1080 217 331 135 0 chr1 64895220 64895353 -132300079 - MIR SINE MIR -80 182 32 7 1080 450 220 224 8 chr1 64895902 64896110 -132299322 + MER102c DNA MER1_type 1 291 -2137 7 1080 207 88 0 0 chr1 64896396 64896430 -132299002 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1080 451 287 141 2 chr1 64897474 64897770 -132297662 - MLT1G3 LTR MaLR -1 594 247 7 1080 264 336 43 21 chr1 64897844 64897984 -132297448 - MLT1G3 LTR MaLR -452 143 1 7 1080 251 327 69 10 chr1 64898143 64898245 -132297187 + RSINE1 SINE B4 1 108 -57 7 1080 381 189 31 21 chr1 64898466 64898563 -132296869 + B4 SINE B4 127 224 -68 7 1080 723 314 151 23 chr1 64898761 64899159 -132296273 + MLT1F LTR MaLR 100 548 0 7 1080 357 145 0 0 chr1 64899809 64899871 -132295561 + (CTAAA)n Simple_repeat Simple_repeat 4 65 0 7 1080 445 230 35 26 chr1 64901003 64901119 -132294313 + PB1D10 SINE Alu 1 117 0 7 1080 350 254 35 13 chr1 64901174 64901307 -132294125 + B4A SINE B4 1 144 -148 7 1080 261 0 0 0 chr1 64901370 64901399 -132294033 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1080 493 186 139 58 chr1 64901704 64901841 -132293591 + B1_Mus1 SINE Alu 1 148 0 7 1080 1140 202 10 5 chr1 64902637 64902846 -132292586 + B3 SINE B2 2 211 -5 7 1080 2181 54 11 11 chr1 64903050 64903331 -132292101 + L1Md_F2 LINE L1 6292 6572 -10 7 1080 360 0 0 0 chr1 64903346 64903386 -132292046 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1080 838 254 5 22 chr1 64903478 64903663 -132291769 + B3A SINE B2 1 182 -16 7 1080 740 181 28 0 chr1 64903717 64903861 -132291571 - B1_Mur2 SINE Alu 0 149 2 7 1080 275 237 68 34 chr1 64904558 64904676 -132290756 - RSINE1 SINE B4 -39 126 5 7 1080 267 31 0 0 chr1 64904947 64904979 -132290453 + (CCA)n Simple_repeat Simple_repeat 3 34 0 7 1080 25 0 0 0 chr1 64906149 64906174 -132289258 + AT_rich Low_complexity Low_complexity 1 25 0 7 1080 186 68 43 43 chr1 64906334 64906380 -132289052 + T-rich Low_complexity Low_complexity 3 48 0 7 1080 1174 74 0 0 chr1 64906383 64906531 -132288901 - B1_Mus1 SINE Alu 0 148 1 7 1080 878 280 102 23 chr1 64906880 64907311 -132288121 - L1MB7 LINE L1 -16 6168 5704 7 1080 394 256 13 92 chr1 64907491 64907644 -132287788 - L1MD LINE L1 -583 5596 5456 7 1080 439 232 18 18 chr1 64908092 64908206 -132287226 - PB1D10 SINE Alu 0 117 4 7 1080 1048 205 133 45 chr1 64908362 64908699 -132286733 + ORR1D1 LTR MaLR 3 369 -5 7 1080 261 0 0 0 chr1 64908965 64908994 -132286438 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 1080 387 242 0 0 chr1 64909049 64909148 -132286284 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1080 361 263 70 10 chr1 64909154 64909254 -132286178 + PB1D10 SINE Alu 11 116 -1 7 1080 239 224 0 0 chr1 64910652 64910701 -132284731 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1080 908 262 95 23 chr1 64910717 64910979 -132284453 - B4A SINE B4 -4 288 8 7 1080 273 75 0 0 chr1 64910986 64911026 -132284406 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1080 581 268 73 0 chr1 64911691 64911870 -132283562 - L1MD3 LINE L1 -73 7922 7731 7 1080 197 383 35 7 chr1 64912802 64912944 -132282488 + L3b LINE CR1 55 200 -282 7 1080 195 294 61 38 chr1 64914879 64915010 -132280422 - L2 LINE L2 -1519 1900 1767 7 1080 276 30 0 0 chr1 64915112 64915145 -132280287 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1080 360 0 0 0 chr1 64915986 64916026 -132279406 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1080 6325 54 0 4 chr1 64916084 64916867 -132278565 + L1Md_F2 LINE L1 4807 5586 -297 7 1080 7961 60 10 3 chr1 64916867 64917856 -132277576 + L1Md_F2 LINE L1 5587 6582 0 7 1080 288 0 0 0 chr1 64917859 64917891 -132277541 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1080 474 223 0 0 chr1 64917905 64917999 -132277433 + B4 SINE B4 1 94 -198 7 1080 1300 221 110 71 chr1 64918001 64918439 -132276993 + Lx8 LINE L1 6614 7068 -405 7 1080 452 268 103 40 chr1 64918573 64918748 -132276684 - B3A SINE B2 -9 189 4 7 1080 320 314 0 54 chr1 64918782 64918893 -132276539 + RMER15 LTR ERVL 363 467 -108 7 1080 237 287 33 57 chr1 64918896 64919018 -132276414 + Lx8 LINE L1 7355 7473 0 7 1080 815 221 11 27 chr1 64919050 64919236 -132276196 + B4 SINE B4 110 292 0 7 1080 333 83 100 0 chr1 64919252 64919312 -132276120 + HAL1-3A_ME LINE L1 1975 2040 -818 7 1080 405 0 0 0 chr1 64920913 64920958 -132274474 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1080 462 49 0 0 chr1 64921084 64921145 -132274287 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1080 665 257 64 9 chr1 64921186 64921406 -132274026 - B4A SINE B4 -60 232 1 7 1080 294 337 20 0 chr1 64921558 64921659 -132273773 + PB1D7 SINE Alu 6 108 -12 7 1080 426 304 188 37 chr1 64921891 64922552 -132272880 - L2a LINE L2 -4 3422 2658 7 1080 353 242 137 0 chr1 64923805 64923900 -132271532 + B1_Mur1 SINE Alu 33 140 -9 7 1080 511 301 25 44 chr1 64926440 64926600 -132268832 - RSINE1 SINE B4 0 165 9 7 1080 225 0 0 0 chr1 64926606 64926631 -132268801 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1080 525 252 16 8 chr1 64926802 64926926 -132268506 - ID_B1 SINE B4 -6 218 94 7 1080 632 208 147 11 chr1 64928452 64928642 -132266790 - B3 SINE B2 0 216 1 7 1080 483 18 0 0 chr1 64930451 64930507 -132264925 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1080 243 0 0 0 chr1 64931174 64931201 -132264231 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1080 180 0 0 0 chr1 64931201 64931220 -132264212 + (CG)n Simple_repeat Simple_repeat 2 21 0 7 1080 266 296 25 0 chr1 64932614 64932695 -132262737 - RSINE1 SINE B4 -20 145 63 7 1080 228 250 33 16 chr1 64933573 64933634 -132261798 + G-rich Low_complexity Low_complexity 3 64 0 7 1080 208 323 108 0 chr1 64934005 64934098 -132261334 - MIR SINE MIR -83 125 23 7 1080 231 262 0 15 chr1 64934347 64934413 -132261019 + L2a LINE L2 3265 3329 -97 7 1080 265 286 71 10 chr1 64934433 64934532 -132260900 + Tigger15a DNA TcMar 189 293 -422 7 1080 237 306 112 8 chr1 64935947 64936072 -132259360 - MIR SINE MIR -12 250 113 7 1080 945 208 5 33 chr1 64936759 64936943 -132258489 - B3A SINE B2 -18 180 2 7 1080 556 287 79 5 chr1 64937062 64937251 -132258181 - MIR SINE MIR -21 241 39 7 1080 181 274 0 19 chr1 64937252 64937304 -132258128 - MIRc SINE MIR -120 148 98 7 1080 755 269 107 55 chr1 64937738 64938280 -132257152 + L2 LINE L2 1707 2276 -1143 7 1080 1234 29 0 0 chr1 64938769 64938909 -132256523 + B1_Mus1 SINE Alu 1 140 -8 7 1080 747 33 0 0 chr1 64938926 64939016 -132256416 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 7 1080 296 261 106 56 chr1 64939847 64939989 -132255443 + B1F SINE Alu 1 149 0 7 1080 779 275 27 9 chr1 64939992 64940212 -132255220 + ID_B1 SINE B4 1 224 0 7 1080 188 184 0 20 chr1 64940247 64940297 -132255135 + GA-rich Low_complexity Low_complexity 3 51 0 7 1080 486 91 0 33 chr1 64941304 64941395 -132254037 - L1Md_F2 LINE L1 0 6582 6495 7 1080 226 333 0 0 chr1 64941684 64941738 -132253694 + L2b LINE L2 3309 3362 -13 7 1080 180 333 0 15 chr1 64943130 64943197 -132252235 - MER5A DNA MER1_type -69 120 55 7 1080 366 170 74 74 chr1 64944750 64944858 -132250574 + PB1D10 SINE Alu 3 110 -7 7 1080 249 224 20 0 chr1 64944957 64945006 -132250426 + B1F1 SINE Alu 21 70 -79 7 1080 741 144 118 29 chr1 64945503 64945639 -132249793 + B1_Mur2 SINE Alu 1 148 -1 7 1080 1266 209 77 49 chr1 64946366 64946653 -132248779 + Lx8 LINE L1 6317 6611 -862 7 1080 4893 96 16 13 chr1 64946656 64947365 -132248067 - L1_Mus3 LINE L1 0 6638 5928 7 1080 9771 92 7 0 chr1 64947366 64948790 -132246642 + L1_Mus3 LINE L1 4498 5934 -704 7 1080 2580 244 52 78 chr1 64948789 64948903 -132246529 + Lx8 LINE L1 6606 6699 -774 7 1080 1222 35 14 0 chr1 64948903 64949048 -132246384 + B1_Mus2 SINE Alu 1 147 0 7 1080 2580 244 52 78 chr1 64949048 64949774 -132245658 + Lx8 LINE L1 6700 7424 -49 7 1080 23 0 0 0 chr1 64949867 64949890 -132245542 + AT_rich Low_complexity Low_complexity 1 23 0 7 1080 21 0 0 0 chr1 64950780 64950801 -132244631 + AT_rich Low_complexity Low_complexity 1 21 0 7 1080 777 236 44 10 chr1 64950853 64951058 -132244374 + B3 SINE B2 2 213 -3 7 1080 295 301 88 16 chr1 64952600 64952725 -132242707 + MER96B DNA hAT 284 417 0 7 1080 461 278 25 74 chr1 64953724 64953887 -132241545 - RSINE1 SINE B4 0 165 11 8 1080 509 338 129 72 chr1 64955384 64956006 -132239426 + MER21B LTR ERV1 1 657 -206 8 1080 599 88 198 26 chr1 64957397 64957513 -132237919 + B1_Mus1 SINE Alu 12 147 -1 8 1080 36 0 0 0 chr1 64958191 64958227 -132237205 + AT_rich Low_complexity Low_complexity 1 36 0 8 1080 282 280 0 51 chr1 64958296 64958394 -132237038 + PB1D10 SINE Alu 25 117 0 8 1080 203 269 128 0 chr1 64959409 64959487 -132235945 + L2a LINE L2 3339 3426 0 8 1080 792 251 54 0 chr1 64959552 64959755 -132235677 - B3 SINE B2 0 216 3 8 1080 1148 82 0 0 chr1 64960048 64960195 -132235237 - B1_Mus2 SINE Alu 0 147 1 8 1080 198 316 101 0 chr1 64960204 64960283 -132235149 - L3 LINE CR1 -472 4017 3931 8 1080 207 379 17 8 chr1 64960524 64960641 -132234791 - L3 LINE CR1 -678 3811 3694 8 1080 394 265 98 11 chr1 64960785 64960968 -132234464 - MIR SINE MIR -20 242 44 8 1080 33 0 0 0 chr1 64961586 64961619 -132233813 + AT_rich Low_complexity Low_complexity 1 33 0 8 1080 212 0 0 35 chr1 64963417 64963446 -132231986 + (CAA)n Simple_repeat Simple_repeat 2 29 0 8 1080 185 35 0 65 chr1 64965627 64965658 -132229774 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8 1080 410 216 40 20 chr1 64966740 64966839 -132228593 - PB1D7 SINE Alu 0 120 20 8 1080 260 247 0 110 chr1 64967766 64967857 -132227575 - B1F1 SINE Alu 0 149 69 8 1080 190 0 67 0 chr1 64967885 64967915 -132227517 + (TTTTA)n Simple_repeat Simple_repeat 5 36 0 8 1080 455 271 15 44 chr1 64970009 64970144 -132225288 + B1F SINE Alu 19 149 0 8 1080 381 270 40 0 chr1 64970361 64970465 -132224967 - PB1D7 SINE Alu -7 113 6 8 1080 210 37 0 0 chr1 64970564 64970591 -132224841 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1080 1138 51 0 0 chr1 64970591 64970728 -132224704 - B1_Mus2 SINE Alu -9 138 2 8 1080 263 288 0 0 chr1 64970815 64970888 -132224544 + GA-rich Low_complexity Low_complexity 3 75 0 8 1080 249 271 29 0 chr1 64971501 64971571 -132223861 + PB1D7 SINE Alu 48 119 -1 8 1080 369 232 0 0 chr1 64971797 64971892 -132223540 + (TA)n Simple_repeat Simple_repeat 1 95 0 8 1080 285 98 0 0 chr1 64972083 64972124 -132223308 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1080 800 68 0 33 chr1 64972124 64972245 -132223187 - B1_Mm SINE Alu 0 147 31 8 1080 1127 218 57 11 chr1 64972846 64973111 -132222321 + B4A SINE B4 6 282 -10 8 1080 206 156 22 0 chr1 64973128 64973173 -132222259 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1080 687 141 141 0 chr1 64973320 64973441 -132221991 - B1_Mus1 SINE Alu -5 143 6 8 1080 290 253 12 12 chr1 64974260 64974340 -132221092 - PB1D10 SINE Alu -6 111 32 8 1080 247 276 151 9 chr1 64974683 64974789 -132220643 - LTR79 LTR ERVL -364 163 43 8 1080 1697 119 48 111 chr1 64975415 64975563 -132219869 - RMER1B Other Other 0 1066 937 8 1080 1166 55 7 0 chr1 64975563 64975709 -132219723 + B1_Mus2 SINE Alu 1 147 0 8 1080 1697 119 48 111 chr1 64975709 64975911 -132219521 - RMER1B Other Other -130 936 738 8 1080 196 189 35 70 chr1 64976425 64976482 -132218950 - MIR3 SINE MIR -8 200 146 8 1080 359 309 202 15 chr1 64976516 64976848 -132218584 + MLT1L LTR MaLR 60 453 -157 8 1080 249 372 73 0 chr1 64977241 64977378 -132218054 + MIRb SINE MIR 100 246 -22 8 1080 1492 65 5 0 chr1 64977505 64977691 -132217741 + B2_Mm1a SINE B2 2 188 -5 8 1080 1586 43 0 0 chr1 64977699 64977883 -132217549 + B2_Mm1a SINE B2 3 186 -7 8 1080 924 128 113 0 chr1 64977890 64978085 -132217347 - Lx9 LINE L1 -1 7643 7427 8 1080 839 163 169 0 chr1 64978096 64978268 -132217164 + Lx9 LINE L1 7186 7386 -258 8 1080 787 298 57 25 chr1 64978321 64978603 -132216829 + B4A SINE B4 2 292 0 8 1080 513 178 0 0 chr1 64978605 64978723 -132216709 + (CA)n Simple_repeat Simple_repeat 1 118 0 8 1080 809 223 113 10 chr1 64979210 64979405 -132216027 - B3 SINE B2 0 216 2 8 1080 180 0 0 0 chr1 64979890 64979910 -132215522 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1080 186 354 166 12 chr1 64980392 64980555 -132214877 - MIR3 SINE MIR -2 206 19 8 1080 201 74 0 0 chr1 64981606 64981633 -132213799 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 8 1080 1117 58 25 6 chr1 64982170 64982327 -132213105 + B2_Mm1a SINE B2 2 161 -32 8 1080 288 77 0 0 chr1 64982327 64982366 -132213066 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 8 1080 729 169 96 0 chr1 64982581 64982717 -132212715 + B1_Mur3 SINE Alu 1 149 0 8 1080 1087 141 126 0 chr1 64983159 64983357 -132212075 + URR1A DNA MER1_type 4 226 0 8 1080 276 217 0 32 chr1 64983559 64983621 -132211811 - tRNA-Ala-GCY_ tRNA tRNA -14 61 2 8 1080 333 0 0 0 chr1 64983925 64983962 -132211470 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1080 225 0 0 0 chr1 64984355 64984380 -132211052 + (CTG)n Simple_repeat Simple_repeat 3 27 0 8 1080 315 239 0 14 chr1 64986439 64986511 -132208921 - tRNA-Ala-GCA tRNA tRNA -4 71 1 8 1080 234 91 0 0 chr1 64986949 64986982 -132208450 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1080 356 289 0 0 chr1 64987005 64987081 -132208351 - B4A SINE B4 -209 83 8 8 1080 446 308 14 14 chr1 64987107 64987255 -132208177 - L1MC3 LINE L1 -390 7395 7248 8 1080 398 20 20 0 chr1 64987441 64987492 -132207940 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1080 202 219 0 0 chr1 64987492 64987533 -132207899 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1080 275 276 32 79 chr1 64987976 64988102 -132207330 + MIRm SINE MIR 4 129 -147 8 1080 811 214 7 0 chr1 64988365 64988519 -132206913 - B3 SINE B2 -61 155 1 8 1080 645 76 54 54 chr1 64989312 64989423 -132206009 + RMER6C LTR ERVK 1 111 -579 8 1080 475 198 8 67 chr1 64989407 64989493 -132205939 + MT2B LTR ERVL 181 259 -342 8 1080 432 253 0 10 chr1 64989493 64989589 -132205843 + B1_Mus2 SINE Alu 3 97 -50 8 1080 243 0 0 0 chr1 64989589 64989616 -132205816 + (TGAG)n Simple_repeat Simple_repeat 2 28 0 8 1080 1116 150 0 8 chr1 64989616 64989978 -132205454 + (TGGG)n Simple_repeat Simple_repeat 1 359 0 8 1080 1555 121 40 7 chr1 64990017 64990292 -132205140 + RMER6C LTR ERVK 407 690 0 8 1080 384 77 0 0 chr1 64990762 64990814 -132204618 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1080 642 212 13 64 chr1 64990829 64990985 -132204447 - RSINE1 SINE B4 -16 149 2 8 1080 784 265 221 7 chr1 64990990 64991252 -132204180 + MTEa LTR MaLR 6 311 -68 8 1080 468 35 0 0 chr1 64991252 64991310 -132204122 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 8 1080 784 265 221 7 chr1 64991310 64991355 -132204077 + MTEa LTR MaLR 312 379 0 8 1080 258 184 0 0 chr1 64991501 64991550 -132203882 + ID4_ SINE ID 30 78 -5 8 1080 279 240 251 20 chr1 64993107 64993301 -132202131 - B3 SINE B2 0 198 1 8 1080 674 186 71 0 chr1 64993639 64993779 -132201653 + B1_Mur4 SINE Alu 1 150 0 8 1080 303 389 28 17 chr1 64993915 64994093 -132201339 - MIR SINE MIR -3 259 80 8 1080 183 100 0 0 chr1 64994844 64994874 -132200558 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 8 1080 1121 58 29 0 chr1 64994878 64995016 -132200416 - B1_Mus2 SINE Alu -5 142 1 8 1080 1243 27 7 0 chr1 64995432 64995579 -132199853 + B1_Mus1 SINE Alu 1 148 0 8 1080 531 0 0 0 chr1 64995581 64995640 -132199792 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 8 1080 1424 255 104 18 chr1 64995787 64996231 -132199201 + Lx7 LINE L1 6819 7300 -396 8 1080 212 326 29 48 chr1 64997645 64997748 -132197684 + L2c LINE L2 3255 3355 -32 8 1080 583 230 29 15 chr1 64997996 64998133 -132197299 + B1_Mur2 SINE Alu 1 139 -10 8 1080 216 0 0 0 chr1 64998133 64998157 -132197275 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 8 1080 316 234 16 266 chr1 64999094 64999286 -132196146 + B1F SINE Alu 1 144 -5 8 1080 1575 42 11 0 chr1 64999411 64999601 -132195831 - B2_Mm1t SINE B2 0 193 2 8 1080 269 317 135 26 chr1 65000001 65000231 -132195201 - L1M5 LINE L1 -313 5811 5557 1 1080 493 275 99 108 chr1 65000861 65001093 -132194339 - MLT1E2 LTR MaLR -148 479 250 2 1080 297 206 307 8 chr1 65001489 65001616 -132193816 - L1MB2 LINE L1 -3 6168 6004 3 1080 1254 34 0 0 chr1 65001622 65001768 -132193664 + B1_Mm SINE Alu 2 147 0 4 1080 245 27 54 0 chr1 65001778 65001815 -132193617 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1080 690 142 108 0 chr1 65001948 65002068 -132193364 + B1_Mur1 SINE Alu 12 144 -5 6 1080 259 318 182 0 chr1 65002074 65002222 -132193210 - MIR SINE MIR -59 203 29 7 1080 198 0 0 0 chr1 65003906 65003928 -132191504 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1080 705 175 56 42 chr1 65003955 65004098 -132191334 + B1_Mur1 SINE Alu 5 149 0 9 1080 637 156 0 35 chr1 65004101 65004214 -132191218 + B1_Mur4 SINE Alu 1 109 -41 1 1080 1489 167 34 192 chr1 65004366 65004752 -132190680 + ORR1B1 LTR MaLR 1 339 -55 1 1080 1073 48 0 136 chr1 65004752 65004921 -132190511 + B1_Mm SINE Alu 2 147 0 1 1080 1489 167 34 192 chr1 65004921 65005002 -132190430 + ORR1B1 LTR MaLR 340 394 0 1 1080 364 281 193 25 chr1 65005458 65005655 -132189777 - L1MC1 LINE L1 -6 6327 6098 1 1080 234 0 0 0 chr1 65005695 65005721 -132189711 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1080 1166 75 0 0 chr1 65005721 65005867 -132189565 - B1_Mm SINE Alu 0 147 2 1 1080 893 236 173 22 chr1 65006188 65006500 -132188932 - ORR1E LTR MaLR 0 359 1 1 1080 2909 18 0 48 chr1 65006885 65007239 -132188193 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 16 56546 21 19 2 chr1 65007239 65013608 -132181824 - IAPEz-int LTR ERVK 0 6481 8 1 1081 2909 18 0 48 chr1 65013608 65013962 -132181470 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1081 325 264 0 0 chr1 65014297 65014369 -132181063 + ID2 SINE ID 2 73 -10 1 1081 412 286 3 56 chr1 65014557 65014743 -132180689 + RSINE1 SINE B4 3 173 -119 1 1081 234 207 102 17 chr1 65014782 65014841 -132180591 + RSINE1 SINE B4 82 145 -20 1 1081 230 268 54 40 chr1 65014952 65014968 -132180464 + B4 SINE B4 70 144 -148 2 1081 299 143 69 35 chr1 65014968 65015026 -132180406 + B1_Mur4 SINE Alu 1 60 -90 2 1081 234 206 0 0 chr1 65015047 65015115 -132180317 + GA-rich Low_complexity Low_complexity 2 69 0 2 1081 610 144 10 0 chr1 65015118 65015222 -132180210 + B1_Mus2 SINE Alu 40 144 -3 2 1081 321 68 0 0 chr1 65015233 65015277 -132180155 + (TATG)n Simple_repeat Simple_repeat 4 47 0 2 1081 1761 158 83 3 chr1 65015278 65015602 -132179830 - ORR1B2 LTR MaLR -8 359 10 2 1081 2279 159 60 2 chr1 65015656 65016054 -132179378 + MTC LTR MaLR 1 421 0 2 1081 291 324 45 0 chr1 65016840 65016951 -132178481 - LTR16A LTR ERVL -94 357 242 2 1081 348 319 54 20 chr1 65017168 65017315 -132178117 - LTR16A LTR ERVL -227 224 73 2 1081 360 219 155 0 chr1 65017536 65017658 -132177774 + B1F SINE Alu 2 140 -9 2 1081 187 79 53 0 chr1 65018066 65018104 -132177328 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1081 225 0 0 0 chr1 65018140 65018165 -132177267 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1081 1225 48 0 7 chr1 65018165 65018313 -132177119 - B1_Mm SINE Alu 0 147 1 3 1081 253 252 121 71 chr1 65018710 65018851 -132176581 - MLT1A0 LTR MaLR -214 151 4 3 1081 186 128 0 0 chr1 65019124 65019163 -132176269 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1081 819 221 21 10 chr1 65019833 65020025 -132175407 + RMER20B LTR ERVK 1 194 -433 3 1081 723 217 152 127 chr1 65020040 65020362 -132175070 + RMER20B LTR ERVK 273 602 -25 3 1081 1198 61 0 0 chr1 65020403 65020550 -132174882 + B1_Mus1 SINE Alu 2 148 0 3 1081 285 51 0 0 chr1 65020555 65020594 -132174838 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 1081 233 256 12 0 chr1 65021882 65021964 -132173468 + CT-rich Low_complexity Low_complexity 1 83 0 3 1081 383 276 0 38 chr1 65022733 65022747 -132172685 - ID_B1 SINE B4 -16 208 82 3 1081 720 161 8 0 chr1 65022747 65022865 -132172567 - B1_Mur4 SINE Alu -31 119 1 3 1081 226 16 0 113 chr1 65022960 65023031 -132172401 + (CCCCAG)n Simple_repeat Simple_repeat 2 64 0 4 1081 347 291 0 100 chr1 65023512 65023541 -132171891 - PB1D10 SINE Alu 0 117 1 4 1081 349 292 0 50 chr1 65023541 65023642 -132171790 - ID_B1 SINE B4 -47 177 82 4 1081 439 299 20 53 chr1 65023726 65023878 -132171554 + B1F SINE Alu 1 147 -2 4 1081 406 238 9 47 chr1 65024286 65024392 -132171040 + B4A SINE B4 129 230 -62 4 1081 376 200 179 0 chr1 65024394 65024489 -132170943 + PB1D9 SINE Alu 2 113 -7 4 1081 445 267 35 43 chr1 65024489 65024630 -132170802 + B1F2 SINE Alu 5 144 -5 4 1081 537 44 0 0 chr1 65024752 65024820 -132170612 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1081 501 17 0 0 chr1 65025661 65025719 -132169713 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1081 596 307 44 15 chr1 65025881 65026086 -132169346 - B4A SINE B4 -76 216 6 4 1081 577 13 26 13 chr1 65026092 65026170 -132169262 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 5 1081 921 264 24 31 chr1 65026258 65026551 -132168881 - B4A SINE B4 -1 291 1 5 1081 941 166 207 0 chr1 65026732 65026901 -132168531 - B3 SINE B2 -12 204 1 5 1081 934 258 60 0 chr1 65027139 65027372 -132168060 - Lx8 LINE L1 -1001 6472 6226 5 1081 420 229 169 19 chr1 65027626 65027786 -132167646 + MTEb LTR MaLR 196 379 0 5 1081 210 258 40 0 chr1 65027786 65027910 -132167522 + (TATG)n Simple_repeat Simple_repeat 1 129 0 5 1081 417 292 0 0 chr1 65027886 65028057 -132167375 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 1081 344 274 0 31 chr1 65028064 65028162 -132167270 + (TATG)n Simple_repeat Simple_repeat 2 96 0 5 1081 393 233 0 0 chr1 65028179 65028295 -132167137 + (TG)n Simple_repeat Simple_repeat 1 116 0 5 1081 423 0 0 0 chr1 65028473 65028520 -132166912 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 5 1081 325 185 15 0 chr1 65029714 65029779 -132165653 - PB1D9 SINE Alu -10 110 45 6 1081 26 82 0 0 chr1 65029795 65029856 -132165576 + AT_rich Low_complexity Low_complexity 1 61 0 6 1081 402 21 0 0 chr1 65029893 65029940 -132165492 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1081 847 234 82 5 chr1 65030013 65030219 -132165213 + ID_B1 SINE B4 3 224 0 6 1081 394 311 20 33 chr1 65030350 65030503 -132164929 + RSINE1 SINE B4 8 158 -7 6 1081 1084 105 10 55 chr1 65030824 65031025 -132164407 + Lx LINE L1 6452 6643 -11 6 1081 288 0 0 0 chr1 65031026 65031058 -132164374 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1081 881 169 220 0 chr1 65031419 65031596 -132163836 - B3 SINE B2 0 216 1 6 1081 189 0 0 0 chr1 65031870 65031891 -132163541 + (TTCTC)n Simple_repeat Simple_repeat 3 23 0 6 1081 309 51 0 0 chr1 65032433 65032472 -132162960 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1081 342 212 0 81 chr1 65033211 65033298 -132162134 - PB1D9 SINE Alu 0 120 41 7 1081 514 271 24 66 chr1 65033310 65033476 -132161956 - B3A SINE B2 0 198 40 7 1081 691 304 15 97 chr1 65034001 65034355 -132161077 + MTE2a LTR MaLR 35 364 -55 7 1081 714 153 77 42 chr1 65034355 65034498 -132160934 - B1F2 SINE Alu -1 148 1 7 1081 691 310 25 114 chr1 65034498 65034554 -132160878 + MTE2a LTR MaLR 338 405 -14 7 1081 187 106 0 60 chr1 65034724 65034774 -132160658 + T-rich Low_complexity Low_complexity 3 49 0 7 1081 828 232 189 40 chr1 65034812 65035140 -132160292 + MTD LTR MaLR 36 412 -7 7 1081 234 269 44 15 chr1 65035486 65035554 -132159878 - PB1 SINE Alu -1 126 57 7 1081 407 121 61 0 chr1 65035493 65035559 -132159873 - ID_B1 SINE B4 -9 215 146 7 1081 335 250 35 88 chr1 65035559 65035673 -132159759 - ID_B1 SINE B4 -27 197 90 7 1081 568 244 145 0 chr1 65035695 65035867 -132159565 - B3A SINE B2 0 198 2 7 1081 645 309 111 26 chr1 65035941 65036410 -132159022 + L1MA6 LINE L1 5718 6226 -74 8 1081 324 276 0 13 chr1 65036502 65036579 -132158853 - RSINE1 SINE B4 -1 164 89 8 1081 2284 110 25 0 chr1 65036579 65036898 -132158534 + ORR1A2 LTR MaLR 1 327 0 8 1081 9516 126 60 76 chr1 65036898 65038016 -132157416 + ORR1A2-int LTR MaLR 1 1098 -865 8 1081 1150 107 5 115 chr1 65038016 65038175 -132157257 - B2_Mm1t SINE B2 -14 179 35 8 1081 1202 56 0 0 chr1 65038175 65038318 -132157114 - B1_Mm SINE Alu -3 144 2 8 1081 1150 107 5 115 chr1 65038318 65038358 -132157074 - B2_Mm1t SINE B2 -159 34 2 8 1081 9516 126 60 76 chr1 65038358 65038702 -132156730 + ORR1A2-int LTR MaLR 1099 1423 -540 8 1081 1174 87 105 0 chr1 65038702 65038874 -132156558 + B2_Mm1a SINE B2 2 191 -2 8 1081 9516 126 60 76 chr1 65038874 65039406 -132156026 + ORR1A2-int LTR MaLR 1424 1963 0 8 1081 1905 145 79 0 chr1 65039406 65039709 -132155723 + ORR1A2 LTR MaLR 1 327 0 8 1081 382 222 0 0 chr1 65039718 65039790 -132155642 - RSINE1 SINE B4 -91 74 3 8 1081 411 21 0 0 chr1 65040445 65040493 -132154939 + (T)n Simple_repeat Simple_repeat 1 48 0 8 1081 219 333 10 0 chr1 65041431 65041530 -132153902 + (GGGTG)n Simple_repeat Simple_repeat 2 101 0 8 1081 313 306 106 6 chr1 65041598 65041759 -132153673 + MER99 DNA hAT? 650 826 -5 8 1081 250 310 0 0 chr1 65042394 65042452 -132152980 + ID4 SINE ID 2 59 -24 8 1081 570 233 0 0 chr1 65042453 65042633 -132152799 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1081 486 88 0 0 chr1 65042808 65042876 -132152556 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1081 1032 227 0 5 chr1 65042922 65043121 -132152311 - B3A SINE B2 0 198 1 9 1081 1431 58 0 0 chr1 65043386 65043748 -132151684 + (TG)n Simple_repeat Simple_repeat 1 362 0 9 1081 881 273 5 5 chr1 65043846 65044056 -132151376 + ID_B1 SINE B4 9 218 -6 9 1081 1129 43 0 7 chr1 65044235 65044374 -132151058 - B1_Mm SINE Alu -9 138 1 9 1081 377 51 0 33 chr1 65044720 65044781 -132150651 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 9 1081 546 248 119 65 chr1 65045096 65045375 -132150057 + MTE2a LTR MaLR 139 400 -19 9 1081 517 330 55 90 chr1 65046719 65047065 -132148367 + ORR1E LTR MaLR 4 337 -22 9 1081 211 204 0 0 chr1 65047367 65047411 -132148021 + L2a LINE L2 3381 3424 -2 9 1081 702 205 46 7 chr1 65047878 65048030 -132147402 - U1 snRNA snRNA -1 164 7 1 1081 336 332 117 46 chr1 65048378 65048728 -132146704 + LTR33 LTR ERVL 100 474 -41 1 1081 628 125 45 0 chr1 65048813 65048925 -132146507 + B1_Mur3 SINE Alu 31 147 -2 1 1081 520 176 25 8 chr1 65048938 65049058 -132146374 + GA-rich Low_complexity Low_complexity 6 127 0 1 1081 543 319 7 0 chr1 65049091 65049232 -132146200 + ID_B1 SINE B4 80 221 -3 1 1081 496 300 103 15 chr1 65049360 65049563 -132145869 - MIR SINE MIR -36 226 6 1 1081 2445 123 30 28 chr1 65050216 65050609 -132144823 + ORR1B1 LTR MaLR 1 394 0 1 1081 542 103 0 11 chr1 65050705 65050793 -132144639 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 1 1081 440 331 120 73 chr1 65050880 65051222 -132144210 - MLT2B3 LTR ERVL -129 425 68 1 1081 398 288 53 58 chr1 65051487 65051675 -132143757 + RLTR23 LTR ERV1 244 430 0 1 1081 304 133 0 0 chr1 65051677 65051722 -132143710 - MLT2B3 LTR ERVL -463 91 47 1 1081 390 21 0 0 chr1 65051897 65051944 -132143488 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1081 960 74 0 0 chr1 65051944 65052079 -132143353 - B2_Mm2 SINE B2 -60 135 1 1 1081 5143 130 41 24 chr1 65052081 65052950 -132142482 - RMER19B LTR ERVK -18 884 1 1 1081 399 54 0 0 chr1 65052950 65053006 -132142426 - B2_Mm2 SINE B2 -138 57 2 1 1081 1149 75 0 7 chr1 65053138 65053277 -132142155 + B1_Mm SINE Alu 1 139 -8 1 1081 286 42 42 0 chr1 65053277 65053325 -132142107 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1081 228 67 0 0 chr1 65053332 65053362 -132142070 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1081 423 268 8 43 chr1 65053399 65053516 -132141916 + RSINE1 SINE B4 6 118 -47 1 1081 23 47 0 30 chr1 65053572 65053596 -132141836 + AT_rich Low_complexity Low_complexity 1 24 0 1 1081 354 251 77 87 chr1 65053596 65053792 -132141640 + B3A SINE B2 5 198 0 1 1081 970 143 45 22 chr1 65053797 65053976 -132141456 - B2_Mm2 SINE B2 -12 183 1 1 1081 23 47 0 30 chr1 65053976 65054011 -132141421 + AT_rich Low_complexity Low_complexity 1 35 0 1 1081 225 0 0 0 chr1 65054053 65054078 -132141354 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1081 368 323 86 40 chr1 65054106 65054450 -132140982 - ORR1E LTR MaLR -3 376 1 1 1081 1751 240 16 47 chr1 65055868 65056357 -132139075 + RMER19C LTR ERVK 138 611 0 1 1081 396 0 0 0 chr1 65057045 65057089 -132138343 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1081 1146 54 0 33 chr1 65057093 65057246 -132138186 + B1_Mus1 SINE Alu 1 148 0 1 1081 210 350 32 24 chr1 65058062 65058188 -132137244 - L2 LINE L2 -1049 2370 2244 1 1081 718 201 77 0 chr1 65058313 65058482 -132136950 - URR1A DNA MER1_type 0 226 45 1 1081 1312 93 55 0 chr1 65058551 65058733 -132136699 + B2_Mm2 SINE B2 3 194 -1 1 1081 345 250 116 20 chr1 65059076 65059223 -132136209 + RSINE1 SINE B4 3 163 -2 1 1081 1346 124 76 0 chr1 65060258 65060468 -132134964 - URR1A DNA MER1_type 0 226 1 1 1081 304 149 40 0 chr1 65060468 65060542 -132134890 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1 1081 22 0 0 0 chr1 65060727 65060749 -132134683 + AT_rich Low_complexity Low_complexity 1 22 0 1 1081 988 106 42 0 chr1 65061031 65061173 -132134259 - B1_Mus1 SINE Alu 0 148 1 1 1081 286 259 85 12 chr1 65062065 65062147 -132133285 + PB1D10 SINE Alu 12 99 -18 1 1081 219 36 0 0 chr1 65063050 65063078 -132132354 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1081 949 136 0 0 chr1 65063078 65063218 -132132214 - B1_Mus1 SINE Alu -8 140 1 1 1081 4952 183 70 47 chr1 65063586 65064430 -132131002 + RMER1B Other Other 16 876 -190 1 1081 342 0 0 0 chr1 65064430 65064468 -132130964 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1081 4952 183 70 47 chr1 65064468 65064650 -132130782 + RMER1B Other Other 877 1065 -1 1 1081 745 165 106 17 chr1 65064670 65064849 -132130583 + RLTR20A LTR ERVK 1 195 -346 1 1081 550 122 20 0 chr1 65064850 65064948 -132130484 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 1081 805 185 6 6 chr1 65064948 65065111 -132130321 + RLTR20A LTR ERVK 181 343 -191 1 1081 1013 128 0 13 chr1 65065112 65065272 -132130160 - L1_Mm LINE L1 -565 5615 5447 1 1081 4794 56 43 11 chr1 65065445 65066074 -132129358 - L1_Mus2 LINE L1 -1 6565 5917 1 1081 1901 129 16 3 chr1 65066075 65066379 -132129053 - L1_Mm LINE L1 -453 5430 5123 1 1081 4164 57 4 15 chr1 65066380 65066913 -132128519 + L1_Mus3 LINE L1 6094 6620 -18 1 1081 243 0 0 0 chr1 65066915 65066942 -132128490 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1081 1057 171 0 52 chr1 65066944 65067060 -132128372 + RLTR20A LTR ERVK 343 450 -91 1 1081 318 26 0 0 chr1 65067060 65067099 -132128333 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1081 1057 171 0 52 chr1 65067099 65067192 -132128240 + RLTR20A LTR ERVK 451 541 0 1 1081 464 244 8 54 chr1 65067421 65067551 -132127881 + RSINE1 SINE B4 23 146 -19 1 1081 688 199 38 25 chr1 65067649 65067809 -132127623 + Lx9 LINE L1 7362 7523 -121 1 1081 271 93 55 18 chr1 65067810 65067865 -132127567 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 1 1081 711 0 0 0 chr1 65067868 65067947 -132127485 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 1 1081 368 286 171 27 chr1 65069007 65069194 -132126238 + ID_B1 SINE B4 3 216 -8 1 1081 237 163 0 0 chr1 65069685 65069734 -132125698 + T-rich Low_complexity Low_complexity 1 49 0 1 1081 295 301 97 0 chr1 65070300 65070393 -132125039 + ID_B1 SINE B4 86 187 -37 1 1081 261 252 86 112 chr1 65070393 65070416 -132125016 + PB1D10 SINE Alu 5 117 0 1 1081 321 26 0 0 chr1 65070624 65070662 -132124770 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1081 3082 57 13 8 chr1 65070666 65071058 -132124374 - MTA_Mm LTR MaLR -2 394 1 1 1081 249 159 0 0 chr1 65071474 65071518 -132123914 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1081 383 293 101 34 chr1 65072585 65072822 -132122610 - MER68 LTR ERVL -203 360 108 1 1081 273 75 37 19 chr1 65072952 65073006 -132122426 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1081 912 43 0 0 chr1 65073167 65073284 -132122148 - B1_Mus1 SINE Alu 0 148 32 1 1081 970 81 88 0 chr1 65073339 65073487 -132121945 - B2_Mm2 SINE B2 -34 161 1 1 1081 231 299 0 0 chr1 65073810 65073877 -132121555 + PB1D10 SINE Alu 43 109 -8 1 1081 232 238 14 125 chr1 65073898 65073970 -132121462 + ID4_ SINE ID 5 68 -15 1 1081 702 179 0 0 chr1 65073977 65074111 -132121321 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 1081 961 157 0 0 chr1 65074287 65074446 -132120986 - ORR1A2 LTR MaLR -51 276 118 1 1081 467 308 45 0 chr1 65075368 65075524 -132119908 + RSINE1 SINE B4 3 165 0 1 1081 21 36 0 0 chr1 65075527 65075555 -132119877 + AT_rich Low_complexity Low_complexity 1 28 0 1 1081 659 258 139 41 chr1 65075561 65075929 -132119503 - L1MA5 LINE L1 -474 5826 5423 1 1081 838 195 58 18 chr1 65076148 65076439 -132118993 - Lx9 LINE L1 -11 7633 7305 1 1081 216 0 0 0 chr1 65076549 65076573 -132118859 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1 1081 227 95 48 0 chr1 65076907 65076949 -132118483 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1081 277 326 22 0 chr1 65077703 65077795 -132117637 - B1F SINE Alu -23 126 33 1 1081 504 312 88 69 chr1 65078134 65078216 -132117216 - B4 SINE B4 -2 290 213 1 1081 473 0 18 0 chr1 65078216 65078273 -132117159 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 1 1081 504 312 88 69 chr1 65078273 65078407 -132117025 - B4 SINE B4 -80 212 70 1 1081 510 273 91 25 chr1 65079914 65080113 -132115319 + B3 SINE B2 5 216 0 1 1081 1172 191 16 184 chr1 65080557 65080981 -132114451 + MTC LTR MaLR 1 353 -68 1 1081 1075 166 16 0 chr1 65080965 65081152 -132114280 + ORR1B1 LTR MaLR 197 386 -8 1 1081 786 238 18 80 chr1 65081262 65081486 -132113946 - B3 SINE B2 -5 211 2 1 1081 279 183 62 112 chr1 65081828 65081908 -132113524 - B3 SINE B2 -28 188 113 1 1081 226 149 42 21 chr1 65082550 65082598 -132112834 + GA-rich Low_complexity Low_complexity 4 52 0 1 1081 293 244 16 129 chr1 65082777 65082854 -132112578 - RLTR22_Mur LTR ERVK -1091 757 692 1 1081 1205 126 10 10 chr1 65082854 65083046 -132112386 + B2_Mm2 SINE B2 1 192 -3 1 1081 293 244 16 129 chr1 65083046 65083161 -132112271 - RLTR22_Mur LTR ERVK -1157 691 587 1 1081 486 276 37 3 chr1 65083229 65083432 -132112000 - L1_Mur3 LINE L1 -688 5612 5371 1 1081 3111 46 0 0 chr1 65083509 65083882 -132111550 - L1Md_T LINE L1 0 6582 6210 1 1081 1824 170 58 24 chr1 65083956 65084366 -132111066 + RLTR28 LTR ERVL 57 480 -44 1 1081 3450 147 30 77 chr1 65084358 65085112 -132110320 + RMER6A LTR ERVK 38 756 0 1 1081 268 200 73 44 chr1 65085156 65085224 -132110208 - RSINE1 SINE B4 -45 120 51 1 1081 863 158 30 0 chr1 65085224 65085389 -132110043 + RMER20A LTR ERVK 1 170 -346 1 1081 804 222 117 39 chr1 65085379 65085660 -132109772 + RMER13A LTR ERVK 164 466 -394 1 1081 243 203 0 0 chr1 65086599 65086658 -132108774 + GA-rich Low_complexity Low_complexity 2 60 0 1 1081 311 264 210 43 chr1 65086804 65086990 -132108442 - ID_B1 SINE B4 -4 220 4 1 1081 251 301 48 80 chr1 65087163 65087305 -132108127 + RLTR42-int LTR ERVK 1190 1328 -4194 1 1081 185 0 0 39 chr1 65087305 65087331 -132108101 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1081 251 301 48 80 chr1 65087331 65087376 -132108056 + RLTR42-int LTR ERVK 1329 1371 -4151 1 1081 1250 41 0 0 chr1 65088065 65088212 -132107220 + B1_Mus1 SINE Alu 2 148 0 1 1081 461 139 0 25 chr1 65088212 65088330 -132107102 + A-rich Low_complexity Low_complexity 1 115 0 1 1081 4156 109 23 9 chr1 65088330 65088985 -132106447 + RLTR33 LTR ERVK 15 678 0 1 1081 391 65 86 0 chr1 65089608 65089701 -132105731 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1 1081 340 212 118 46 chr1 65090310 65090463 -132104969 + RLTR43A LTR ERVK 201 364 0 1 1081 261 139 0 0 chr1 65090770 65090813 -132104619 + (TCC)n Simple_repeat Simple_repeat 2 44 0 1 1081 198 0 0 0 chr1 65092045 65092067 -132103365 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1081 942 116 7 0 chr1 65092067 65092205 -132103227 - B1_Mur4 SINE Alu -10 140 2 2 1081 207 100 0 0 chr1 65092219 65092249 -132103183 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 1081 444 161 0 0 chr1 65092710 65092791 -132102641 + (CATA)n Simple_repeat Simple_repeat 3 83 0 2 1081 22 70 0 0 chr1 65093071 65093114 -132102318 + AT_rich Low_complexity Low_complexity 1 43 0 2 1081 335 162 27 0 chr1 65093315 65093389 -132102043 + GA-rich Low_complexity Low_complexity 3 78 0 2 1081 288 254 16 0 chr1 65093392 65093455 -132101977 + RSINE1 SINE B4 2 65 -100 2 1081 238 250 0 0 chr1 65094083 65094131 -132101301 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1081 378 0 0 0 chr1 65095505 65095547 -132099885 + (AGCTG)n Simple_repeat Simple_repeat 2 43 0 2 1081 1290 124 119 0 chr1 65096208 65096410 -132099022 - URR1A DNA MER1_type 0 226 1 2 1081 284 188 0 14 chr1 65096745 65096815 -132098617 + GA-rich Low_complexity Low_complexity 3 71 0 2 1081 393 170 46 83 chr1 65098226 65098335 -132097097 + B1_Mur4 SINE Alu 44 148 -2 2 1081 315 292 67 102 chr1 65098797 65099022 -132096410 - MER20 DNA MER1_type 0 219 3 2 1081 34 0 0 0 chr1 65099235 65099269 -132096163 + AT_rich Low_complexity Low_complexity 1 34 0 2 1081 584 256 155 6 chr1 65099271 65099452 -132095980 - B3 SINE B2 -6 210 3 2 1081 874 133 0 34 chr1 65099525 65099673 -132095759 - B1_Mus1 SINE Alu -2 146 4 2 1081 285 303 145 33 chr1 65099707 65099949 -132095483 + L1ME4a LINE L1 5618 5886 -238 2 1081 1106 262 36 14 chr1 65099960 65100320 -132095112 + L1MB5 LINE L1 4441 4808 -1332 2 1081 293 279 152 9 chr1 65100397 65100607 -132094825 + L1MB5 LINE L1 5860 6099 -75 2 1081 800 275 26 66 chr1 65100809 65101041 -132094391 + B4A SINE B4 1 230 -62 2 1081 3385 76 45 7 chr1 65101041 65101505 -132093927 - RLTR45 LTR ERVK 0 482 1 2 1081 800 275 26 66 chr1 65101505 65101576 -132093856 + B4A SINE B4 231 291 -1 2 1081 299 206 0 40 chr1 65101516 65101592 -132093840 + B3A SINE B2 115 187 -11 2 1081 691 259 78 13 chr1 65101611 65101842 -132093590 + L1MA4 LINE L1 5682 5927 -373 2 1081 819 250 33 57 chr1 65102554 65102726 -132092706 - B3 SINE B2 -6 210 41 2 1081 2516 54 85 0 chr1 65102726 65103057 -132092375 - L1_Mus1 LINE L1 0 6567 6209 2 1081 819 250 33 57 chr1 65103057 65103096 -132092336 - B3 SINE B2 -176 40 4 2 1081 27 29 0 0 chr1 65103245 65103279 -132092153 + AT_rich Low_complexity Low_complexity 1 34 0 2 1081 449 223 32 32 chr1 65103524 65103649 -132091783 - RMER20B LTR ERVK -502 125 1 2 1081 27 96 0 0 chr1 65104441 65104524 -132090908 + AT_rich Low_complexity Low_complexity 1 83 0 2 1081 256 250 17 0 chr1 65104745 65104805 -132090627 - Lx8 LINE L1 -344 7129 7069 2 1081 731 183 14 143 chr1 65104805 65105015 -132090417 + ORR1D1 LTR MaLR 1 183 -191 2 1081 219 154 26 0 chr1 65105015 65105054 -132090378 + C-rich Low_complexity Low_complexity 3 42 0 2 1081 709 158 5 43 chr1 65105056 65105241 -132090191 + CT-rich Low_complexity Low_complexity 2 179 0 2 1081 344 194 90 20 chr1 65105285 65105385 -132090047 + ORR1D1 LTR MaLR 267 373 -1 2 1081 1519 271 22 27 chr1 65105400 65105814 -132089618 - Lx8 LINE L1 -421 7052 6641 2 1081 476 156 11 0 chr1 65106111 65106201 -132089231 + CT-rich Low_complexity Low_complexity 1 91 0 2 1081 670 190 28 0 chr1 65106221 65106363 -132089069 - B1_Mur4 SINE Alu 0 150 5 2 1081 757 189 120 22 chr1 65106910 65107094 -132088338 + B3 SINE B2 5 206 -10 2 1081 748 215 118 6 chr1 65107335 65107513 -132087919 - B3 SINE B2 -17 199 2 2 1081 249 57 0 0 chr1 65107620 65107655 -132087777 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1081 659 303 24 5 chr1 65107753 65107965 -132087467 + B4 SINE B4 2 217 -75 2 1081 353 252 4 37 chr1 65108028 65108301 -132087131 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 1081 248 308 0 0 chr1 65108301 65108366 -132087066 + PB1D10 SINE Alu 52 116 -1 2 1081 24 53 0 0 chr1 65109081 65109119 -132086313 + AT_rich Low_complexity Low_complexity 1 38 0 2 1081 21 0 0 0 chr1 65109145 65109166 -132086266 + AT_rich Low_complexity Low_complexity 1 21 0 2 1081 502 227 8 60 chr1 65112544 65112661 -132082771 + PB1D9 SINE Alu 1 111 -9 2 1081 3872 47 10 0 chr1 65112931 65113445 -132081987 + LTRIS2 LTR ERV1 46 564 0 2 1081 799 104 85 180 chr1 65113564 65113605 -132081827 + B2_Mm2 SINE B2 1 32 -163 2 1081 3889 88 6 0 chr1 65113605 65114127 -132081305 + L1_Mus3 LINE L1 6108 6632 -6 2 1081 799 104 85 180 chr1 65114127 65114296 -132081136 + B2_Mm2 SINE B2 33 191 -4 2 1081 707 224 35 0 chr1 65115044 65115187 -132080245 + B1_Mus1 SINE Alu 1 148 0 2 1081 183 139 0 0 chr1 65115196 65115232 -132080200 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1081 806 141 7 0 chr1 65115742 65115884 -132079548 + (GA)n Simple_repeat Simple_repeat 2 144 0 2 1081 436 299 29 0 chr1 65115994 65116131 -132079301 - B1F1 SINE Alu -6 143 3 2 1081 219 418 0 11 chr1 65116576 65116614 -132078818 + ID_B1 SINE B4 56 143 -78 2 1081 235 294 0 0 chr1 65116614 65116665 -132078767 + B1F1 SINE Alu 12 62 -87 2 1081 941 261 116 18 chr1 65116881 65117216 -132078216 + ORR1D2 LTR MaLR 1 368 -2 2 1081 667 130 0 103 chr1 65117278 65117424 -132078008 - B1_Mus1 SINE Alu -13 135 5 2 1081 387 239 0 33 chr1 65117859 65117950 -132077482 - BC1_Mm scRNA scRNA -54 98 11 2 1081 1137 194 32 9 chr1 65118648 65118867 -132076565 + URR1B DNA MER1_type 1 224 -1 2 1081 216 0 0 0 chr1 65120405 65120429 -132075003 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 2 1081 558 124 0 0 chr1 65120883 65120972 -132074460 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1081 405 0 0 0 chr1 65121205 65121250 -132074182 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1081 329 221 105 0 chr1 65121374 65121460 -132073972 - PB1D7 SINE Alu -16 104 10 2 1081 230 263 0 0 chr1 65121410 65121467 -132073965 - B4A SINE B4 -148 144 88 2 1081 215 271 54 54 chr1 65121566 65121640 -132073792 - ID4_ SINE ID -7 76 3 2 1081 249 365 29 0 chr1 65121751 65121855 -132073577 + MER90a LTR ERV1 507 613 -1 2 1081 495 195 153 8 chr1 65122401 65122525 -132072907 + B1_Mur2 SINE Alu 2 143 -6 2 1081 229 130 55 18 chr1 65122538 65122593 -132072839 + GA-rich Low_complexity Low_complexity 4 60 0 2 1081 197 295 76 69 chr1 65122599 65122730 -132072702 - MER5A DNA MER1_type -3 186 55 2 1081 656 266 115 27 chr1 65122732 65123083 -132072349 + L1MA4A LINE L1 5638 6017 -283 2 1081 733 194 14 29 chr1 65123244 65123382 -132072050 + B1_Mur4 SINE Alu 5 140 -10 2 1081 372 296 83 0 chr1 65123407 65123539 -132071893 - B1F1 SINE Alu -5 144 2 2 1081 1350 80 11 0 chr1 65123606 65123782 -132071650 + B2_Mm1t SINE B2 2 179 -14 2 1081 1921 117 95 22 chr1 65124033 65124392 -132071040 + ORR1B1 LTR MaLR 1 385 -9 2 1081 210 37 0 0 chr1 65124413 65124440 -132070992 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1081 419 291 76 92 chr1 65124495 65124745 -132070687 - Lx8 LINE L1 -178 7295 7050 2 1081 494 266 45 13 chr1 65124762 65124918 -132070514 - Lx8 LINE L1 -465 7008 6848 2 1081 3686 130 70 15 chr1 65124928 65125582 -132069850 + RMER6C LTR ERVK 1 690 0 2 1081 373 150 60 0 chr1 65125668 65125801 -132069631 + (TA)n Simple_repeat Simple_repeat 2 142 0 2 1081 1590 206 133 5 chr1 65125816 65126192 -132069240 - Lx8 LINE L1 -668 6805 6382 2 1081 26 0 0 27 chr1 65129226 65129246 -132066186 + AT_rich Low_complexity Low_complexity 1 20 0 2 1081 1497 60 10 0 chr1 65129246 65129446 -132065986 - L1Md_F2 LINE L1 -16 6566 6365 2 1081 26 0 0 27 chr1 65129446 65129462 -132065970 + AT_rich Low_complexity Low_complexity 1 16 0 2 1081 195 42 0 0 chr1 65129827 65129851 -132065581 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1081 229 245 0 0 chr1 65129959 65130012 -132065420 + G-rich Low_complexity Low_complexity 1 53 0 2 1081 345 246 64 0 chr1 65130194 65130304 -132065128 + Charlie1b DNA MER1_type 244 360 -163 2 1081 21 57 0 0 chr1 65130908 65130943 -132064489 + AT_rich Low_complexity Low_complexity 1 35 0 2 1081 933 227 19 19 chr1 65130947 65131154 -132064278 - B3 SINE B2 -5 211 5 2 1081 865 121 7 0 chr1 65131210 65131350 -132064082 - ORR1A3 LTR MaLR -67 259 119 2 1081 1880 144 12 32 chr1 65131350 65131695 -132063737 + ORR1A1 LTR MaLR 1 338 -8 2 1081 707 89 0 139 chr1 65131698 65131842 -132063590 - ORR1A3 LTR MaLR -205 124 1 2 1081 29 28 0 0 chr1 65132580 65132616 -132062816 + AT_rich Low_complexity Low_complexity 1 36 0 2 1081 1403 79 0 6 chr1 65132649 65132827 -132062605 - B2_Mm2 SINE B2 -18 177 1 2 1081 348 263 106 97 chr1 65133094 65133321 -132062111 - ORR1E LTR MaLR -130 229 1 2 1081 498 33 0 0 chr1 65133485 65133545 -132061887 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1081 2706 255 125 29 chr1 65133577 65133812 -132061620 - Lx8 LINE L1 -360 7113 6849 2 1081 666 0 0 0 chr1 65133812 65133886 -132061546 + (GGGAGA)n Simple_repeat Simple_repeat 6 79 0 2 1081 2706 255 125 29 chr1 65133886 65134481 -132060951 - Lx8 LINE L1 -625 6848 6203 2 1081 509 262 9 0 chr1 65134785 65134892 -132060540 - PB1D10 SINE Alu -8 109 2 2 1081 620 203 0 38 chr1 65134952 65135085 -132060347 + RSINE1 SINE B4 2 129 -36 2 1081 543 319 68 50 chr1 65135806 65136143 -132059289 + ORR1E LTR MaLR 10 352 -7 2 1081 255 233 33 0 chr1 65136672 65136732 -132058700 + MIRc SINE MIR 93 154 -114 2 1081 615 265 158 46 chr1 65136826 65137254 -132058178 - MER31B LTR ERV1 -3 482 7 2 1081 933 288 69 31 chr1 65138661 65139129 -132056303 - L1MB5 LINE L1 -352 5992 5478 2 1081 40 21 0 0 chr1 65139135 65139182 -132056250 + AT_rich Low_complexity Low_complexity 1 47 0 2 1081 867 132 13 46 chr1 65139185 65139336 -132056096 + B1_Mur4 SINE Alu 4 149 -1 2 1081 2334 232 19 32 chr1 65139337 65139800 -132055632 + RMER1A Other Other 4 473 -557 2 1081 3487 28 2 0 chr1 65139800 65140195 -132055237 - MTA_Mm LTR MaLR 0 396 1 2 1081 9521 31 1 0 chr1 65140195 65141292 -132054140 - MTA_Mm-int LTR MaLR 0 1098 1 2 1081 3520 23 2 0 chr1 65141292 65141687 -132053745 - MTA_Mm LTR MaLR 0 396 1 2 1081 2334 232 19 32 chr1 65141687 65141756 -132053676 + RMER1A Other Other 474 529 -501 2 135 2734 139 52 37 chr1 65142367 65142830 -132052602 + RMER1A Other Other 494 963 -67 3 1082 30 45 0 0 chr1 65142833 65142877 -132052555 + AT_rich Low_complexity Low_complexity 1 44 0 3 1082 264 250 88 33 chr1 65142893 65143075 -132052357 - L1MB5 LINE L1 -724 5450 5259 2 1082 28 0 0 0 chr1 65143152 65143180 -132052252 + AT_rich Low_complexity Low_complexity 1 28 0 3 1082 402 185 148 0 chr1 65143231 65143312 -132052120 - RSINE1 SINE B4 -70 95 3 3 1082 1002 296 50 18 chr1 65143313 65143574 -132051858 - L1MB5 LINE L1 -1025 5121 4844 2 1082 2319 155 18 3 chr1 65143574 65143962 -132051470 + ORR1B1 LTR MaLR 1 394 0 3 1082 1002 296 50 18 chr1 65143962 65144195 -132051237 - L1MB5 LINE L1 -1303 4843 4611 2 1082 2641 27 0 0 chr1 65144889 65145188 -132050244 + L1Md_F3 LINE L1 5288 5586 -297 3 1082 8484 26 5 1 chr1 65145188 65146168 -132049264 + L1Md_F3 LINE L1 5587 6570 -14 3 1082 402 313 108 58 chr1 65146380 65146658 -132048774 - B4 SINE B4 0 292 1 3 1082 5427 2 0 0 chr1 65147566 65148153 -132047279 - L1Md_A LINE L1 0 6582 5996 3 1082 192 179 0 0 chr1 65148230 65148269 -132047163 + T-rich Low_complexity Low_complexity 1 39 0 3 1082 418 214 122 13 chr1 65148500 65148656 -132046776 - L1MA7 LINE L1 -3 6288 6116 3 1082 989 230 14 14 chr1 65148675 65148891 -132046541 - B3 SINE B2 0 216 1 3 1082 229 261 31 83 chr1 65149028 65149124 -132046308 - B4A SINE B4 -188 104 14 3 1082 327 243 0 26 chr1 65149052 65149128 -132046304 - ID2 SINE ID 0 83 10 3 1082 638 238 15 1 chr1 65149139 65149300 -132046132 - L1MA7 LINE L1 -228 5961 5799 3 1082 1404 80 21 0 chr1 65150554 65150741 -132044691 - B2_Mm1a SINE B2 -2 191 1 3 1082 21 0 0 0 chr1 65150770 65150791 -132044641 + AT_rich Low_complexity Low_complexity 1 21 0 3 1082 357 24 0 0 chr1 65150791 65150833 -132044599 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1082 24 32 0 0 chr1 65152551 65152582 -132042850 + AT_rich Low_complexity Low_complexity 1 31 0 3 1082 243 0 0 0 chr1 65152879 65152906 -132042526 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1082 1136 82 0 0 chr1 65152906 65153042 -132042390 - B1_Mus1 SINE Alu -10 138 3 3 1082 216 0 0 0 chr1 65153049 65153073 -132042359 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1082 334 244 94 17 chr1 65153294 65153411 -132042021 - MIR SINE MIR -47 215 90 3 1082 271 74 36 18 chr1 65153455 65153510 -132041922 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 1082 876 171 0 27 chr1 65153718 65153868 -132041564 + B1_Mus1 SINE Alu 1 146 -2 3 1082 405 123 0 0 chr1 65154369 65154434 -132040998 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1082 374 125 22 33 chr1 65155028 65155119 -132040313 + (TATG)n Simple_repeat Simple_repeat 1 90 0 3 1082 1227 91 0 0 chr1 65155634 65155809 -132039623 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 3 1082 423 0 0 0 chr1 65155809 65155855 -132039577 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 3 1082 252 0 0 0 chr1 65155855 65155882 -132039550 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 3 1082 273 327 19 19 chr1 65155882 65155985 -132039447 - MIR SINE MIR -128 134 32 3 1082 22 0 0 0 chr1 65156329 65156351 -132039081 + AT_rich Low_complexity Low_complexity 1 22 0 3 1082 28 0 0 0 chr1 65156951 65156979 -132038453 + AT_rich Low_complexity Low_complexity 1 28 0 3 1082 205 331 6 50 chr1 65157333 65157492 -132037940 + CT-rich Low_complexity Low_complexity 1 152 0 3 1082 3773 122 34 3 chr1 65157552 65158170 -132037262 + RLTR33 LTR ERVK 36 672 -6 3 1082 488 175 60 53 chr1 65158297 65158430 -132037002 - B1_Mur4 SINE Alu -7 143 10 3 1082 755 202 202 0 chr1 65159876 65160049 -132035383 + B3 SINE B2 1 208 -8 3 1082 180 0 0 0 chr1 65160049 65160069 -132035363 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1082 333 0 0 0 chr1 65160111 65160148 -132035284 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1082 237 139 0 0 chr1 65160671 65160714 -132034718 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1082 387 0 0 0 chr1 65160719 65160762 -132034670 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1082 836 82 8 0 chr1 65160842 65160964 -132034468 - B2_Mm1t SINE B2 -69 124 2 3 1082 1382 51 67 0 chr1 65161338 65161516 -132033916 + B2_Mm1a SINE B2 2 191 -2 3 1082 509 236 16 16 chr1 65161528 65161657 -132033775 - ID_B1 SINE B4 -2 222 94 3 1082 383 350 7 0 chr1 65161965 65162102 -132033330 - RSINE1 SINE B4 -17 148 11 3 1082 392 194 0 14 chr1 65162197 65162270 -132033162 + ID4_ SINE ID 1 72 -11 3 1082 968 81 14 12 chr1 65162270 65163089 -132032343 + (CA)n Simple_repeat Simple_repeat 1 820 0 3 1082 240 222 0 0 chr1 65163156 65163201 -132032231 + ID4 SINE ID 3 47 -36 3 1082 22 56 0 0 chr1 65163544 65163580 -132031852 + AT_rich Low_complexity Low_complexity 1 36 0 3 1082 1010 232 47 40 chr1 65163842 65164116 -132031316 - B4 SINE B4 0 292 17 3 1082 198 0 0 0 chr1 65164269 65164291 -132031141 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1082 836 142 0 0 chr1 65164291 65164418 -132031014 - B1_Mus2 SINE Alu -12 135 9 3 1082 487 234 16 39 chr1 65164913 65165042 -132030390 - RSINE1 SINE B4 -36 129 4 3 1082 994 251 55 48 chr1 65165749 65166038 -132029394 + B4A SINE B4 2 292 0 3 1082 429 20 0 0 chr1 65166290 65166340 -132029092 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1082 1168 48 7 0 chr1 65166605 65166751 -132028681 - B1_Mus2 SINE Alu 0 147 1 3 1082 306 98 0 0 chr1 65167794 65167845 -132027587 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1082 362 206 0 0 chr1 65168364 65168427 -132027005 + B1_Mur3 SINE Alu 2 64 -85 3 1082 261 180 0 0 chr1 65168557 65168607 -132026825 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 3 1082 509 241 62 49 chr1 65168642 65168786 -132026646 - B1_Mur2 SINE Alu 0 149 4 3 1082 276 324 62 62 chr1 65169993 65170154 -132025278 - RSINE1 SINE B4 -2 163 3 3 1082 586 299 37 115 chr1 65170617 65170991 -132024441 + MLT2D LTR ERVL 1 345 -69 3 1082 779 202 2 5 chr1 65171076 65171730 -132023702 + (CA)n Simple_repeat Simple_repeat 1 651 0 3 1082 2914 28 2 124 chr1 65171749 65172191 -132023241 - RLTR10 LTR ERVK -2 388 1 3 1082 15315 30 32 56 chr1 65172193 65174184 -132021248 - RLTR10-int LTR ERVK -3 1984 41 3 1082 2852 34 2 126 chr1 65174196 65174634 -132020798 - RLTR10 LTR ERVK -2 388 5 3 1082 276 100 0 0 chr1 65174634 65174674 -132020758 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1082 252 86 0 0 chr1 65175210 65175245 -132020187 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 1082 762 149 0 66 chr1 65175894 65176045 -132019387 - B1_Mur4 SINE Alu -7 143 3 3 1082 216 200 0 0 chr1 65176662 65176707 -132018725 + T-rich Low_complexity Low_complexity 1 45 0 3 1082 1588 227 30 49 chr1 65176882 65177309 -132018123 + MTD LTR MaLR 1 419 0 3 1082 295 250 13 26 chr1 65177535 65177613 -132017819 - ID4_ SINE ID -4 79 3 3 1082 336 273 108 52 chr1 65177651 65177883 -132017549 - MER34 LTR ERV1 0 571 301 3 1082 235 267 0 122 chr1 65178347 65178445 -132016987 + LTR88c LTR Genie? 33 118 -744 3 1082 181 338 42 0 chr1 65178505 65178576 -132016856 + MER5B DNA MER1_type 93 166 -12 3 1082 5359 189 94 47 chr1 65178770 65180020 -132015412 - Lx9 LINE L1 -3 7641 6333 3 1082 306 0 0 0 chr1 65180024 65180058 -132015374 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1082 6340 68 14 22 chr1 65180101 65180929 -132014503 - RLTR13B2 LTR ERVK 0 822 1 3 1082 920 241 35 35 chr1 65181079 65181307 -132014125 + B4A SINE B4 2 229 -63 3 1082 592 190 132 0 chr1 65181655 65181776 -132013656 + B1_Mur4 SINE Alu 13 149 -1 3 1082 270 0 0 0 chr1 65181781 65181811 -132013621 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1082 27 81 0 0 chr1 65181829 65181891 -132013541 + AT_rich Low_complexity Low_complexity 1 62 0 3 1082 384 320 74 31 chr1 65182602 65182860 -132012572 - RLTR14-int LTR ERV1 -184 5133 4865 3 1082 1081 298 29 18 chr1 65183380 65183766 -132011666 - RLTR4_MM-int LTR ERV1 -2288 5313 4924 3 1082 791 325 90 29 chr1 65183877 65184590 -132010842 - RLTR4_MM-int LTR ERV1 -3230 4371 3532 3 1082 559 304 72 49 chr1 65184848 65185235 -132010197 - MuRRS4-int LTR ERV1 -3609 1454 1059 3 1082 207 0 0 0 chr1 65186448 65186471 -132008961 + (ATG)n Simple_repeat Simple_repeat 2 24 0 3 1082 288 281 31 20 chr1 65186527 65186625 -132008807 - RLTR23 LTR ERV1 0 430 332 3 1082 414 0 0 0 chr1 65187811 65187857 -132007575 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1082 2742 31 3 0 chr1 65188023 65188348 -132007084 - L1Md_F2 LINE L1 -2 6580 6255 3 1082 2375 224 14 65 chr1 65188814 65189458 -132005974 + RMER19C LTR ERVK 1 611 0 3 1082 776 57 0 9 chr1 65189882 65189989 -132005443 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 3 1082 229 225 22 0 chr1 65189991 65190080 -132005352 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 1082 4532 66 0 12 chr1 65190092 65190663 -132004769 - LTRIS2 LTR ERV1 0 564 1 3 1082 813 163 47 35 chr1 65190696 65190868 -132004564 - B2_Mm2 SINE B2 -19 176 3 3 1082 585 246 95 51 chr1 65192020 65192294 -132003138 - L1MA7 LINE L1 -280 6011 5726 3 1082 234 150 0 0 chr1 65192744 65192784 -132002648 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1082 197 119 24 0 chr1 65192815 65192857 -132002575 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1082 218 140 34 34 chr1 65193079 65193138 -132002294 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1082 792 50 0 0 chr1 65193603 65193704 -132001728 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 1082 222 336 26 17 chr1 65194256 65194274 -132001158 - B4A SINE B4 -176 116 1 3 1082 433 196 31 0 chr1 65194274 65194371 -132001061 - B3A SINE B2 -98 100 1 3 1082 571 155 29 0 chr1 65194451 65194554 -132000878 + B1_Mur4 SINE Alu 1 106 -44 3 1082 724 259 47 43 chr1 65195581 65195835 -131999597 - RMER15 LTR ERVL -14 561 307 3 1082 233 302 30 40 chr1 65195905 65196005 -131999427 - Lx8 LINE L1 -295 7178 7080 3 1082 324 158 0 0 chr1 65196107 65196164 -131999268 + (TTA)n Simple_repeat Simple_repeat 1 57 0 4 1082 59 27 0 0 chr1 65196285 65196358 -131999074 + AT_rich Low_complexity Low_complexity 1 73 0 4 1082 512 301 184 34 chr1 65196660 65197187 -131998245 + L1MC4 LINE L1 6942 7547 -495 4 1082 2091 124 17 61 chr1 65197560 65197904 -131997528 + ORR1A4 LTR MaLR 1 329 0 4 1082 10501 143 50 23 chr1 65197904 65199815 -131995617 + ORR1A4-int LTR MaLR 1 1963 0 4 1082 1867 141 30 60 chr1 65199815 65200147 -131995285 + ORR1A4 LTR MaLR 1 322 -4 4 1082 348 279 152 34 chr1 65200229 65200433 -131994999 + LTR48B LTR ERV1 417 644 0 4 1082 613 182 23 31 chr1 65200623 65200753 -131994679 + B1_Mur4 SINE Alu 22 150 0 4 1082 190 73 24 24 chr1 65200753 65200795 -131994637 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 4 1082 254 115 19 0 chr1 65200983 65201035 -131994397 + (TTG)n Simple_repeat Simple_repeat 2 54 0 4 1082 1449 54 32 0 chr1 65201168 65201353 -131994079 + B2_Mm2 SINE B2 1 191 -4 4 1082 444 290 128 22 chr1 65201947 65202127 -131993305 - ID_B1 SINE B4 -1 223 25 4 1082 372 359 0 8 chr1 65202288 65202406 -131993026 - PB1 SINE Alu -2 125 9 4 1082 384 128 110 55 chr1 65202458 65202549 -131992883 - B1_Mur4 SINE Alu -1 149 54 4 1082 233 29 0 29 chr1 65202740 65202775 -131992657 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1082 557 160 20 0 chr1 65202775 65202875 -131992557 - B1_Mus1 SINE Alu -11 137 36 4 1082 418 312 56 8 chr1 65203335 65203461 -131991971 - RSINE1 SINE B4 -31 134 3 4 1082 212 265 20 0 chr1 65203717 65203766 -131991666 + CT-rich Low_complexity Low_complexity 1 50 0 4 1082 929 71 29 34 chr1 65203766 65203941 -131991491 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 4 1082 249 222 143 0 chr1 65203946 65204009 -131991423 - B4 SINE B4 -220 72 1 4 1082 1507 58 5 0 chr1 65204185 65204373 -131991059 - B2_Mm1a SINE B2 -4 189 1 4 1082 820 161 0 7 chr1 65204636 65204780 -131990652 - B1_Mus1 SINE Alu 0 148 6 4 1082 742 246 235 11 chr1 65204858 65205157 -131990275 + MTE2a LTR MaLR 12 377 -2 4 1082 373 246 145 63 chr1 65206614 65206835 -131988597 - Lx9 LINE L1 0 7644 7406 4 1082 601 248 112 0 chr1 65207091 65207252 -131988180 - B3A SINE B2 -18 180 2 4 1082 23 0 0 0 chr1 65207256 65207279 -131988153 + AT_rich Low_complexity Low_complexity 1 23 0 4 1082 304 364 12 78 chr1 65207312 65207479 -131987953 + MER58A DNA MER1_type 1 156 -68 4 1082 378 328 32 8 chr1 65208114 65208237 -131987195 + B1F1 SINE Alu 13 138 -11 4 1082 232 315 45 0 chr1 65208779 65208868 -131986564 + MIR SINE MIR 113 205 -57 4 1082 306 0 0 0 chr1 65209338 65209372 -131986060 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4 1082 600 289 18 25 chr1 65209379 65209542 -131985890 - RSINE1 SINE B4 -1 164 3 4 1082 220 204 36 18 chr1 65210264 65210319 -131985113 + BC1_Mm scRNA scRNA 2 57 -95 4 1082 237 33 0 0 chr1 65210366 65210396 -131985036 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1082 571 225 72 7 chr1 65210953 65211092 -131984340 - B1_Mur2 SINE Alu 0 149 2 4 1082 652 192 261 0 chr1 65211377 65211538 -131983894 + B3 SINE B2 2 204 -12 4 1082 767 208 14 0 chr1 65213132 65213276 -131982156 + B1_Mur3 SINE Alu 4 149 0 4 1082 1209 94 39 0 chr1 65213347 65213528 -131981904 + B2_Mm2 SINE B2 7 194 -1 4 1082 950 134 14 0 chr1 65213617 65213759 -131981673 - B1_Mur4 SINE Alu -6 144 1 4 1082 334 322 105 112 chr1 65213799 65214093 -131981339 - B4 SINE B4 0 292 1 4 1082 328 280 48 63 chr1 65214631 65214757 -131980675 - B4A SINE B4 -167 125 2 4 1082 739 144 45 8 chr1 65214848 65214981 -131980451 - B1_Mur4 SINE Alu -7 143 6 4 1082 1050 249 55 110 chr1 65215454 65215855 -131979577 - MTE2a LTR MaLR 0 379 1 4 1082 615 156 8 62 chr1 65218570 65218700 -131976732 + B1_Mur4 SINE Alu 1 123 -27 4 1082 216 0 0 0 chr1 65218746 65218770 -131976662 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1082 223 252 255 28 chr1 65219260 65219273 -131976159 - ID_B1 SINE B4 -2 222 93 4 1082 439 247 11 0 chr1 65219273 65219366 -131976066 - PB1D7 SINE Alu -15 105 12 4 1082 618 241 63 140 chr1 65219401 65219686 -131975746 + B4 SINE B4 7 269 -23 4 1082 534 43 0 0 chr1 65219705 65219774 -131975658 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1082 333 0 0 0 chr1 65219774 65219810 -131975622 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1082 273 225 0 40 chr1 65219858 65219932 -131975500 + B1_Mur1 SINE Alu 79 149 0 4 1082 410 226 277 0 chr1 65219964 65220105 -131975327 + B3A SINE B2 2 183 -33 4 1082 582 171 45 0 chr1 65220591 65220702 -131974730 + B1_Mus1 SINE Alu 10 125 -23 4 1082 318 271 39 8 chr1 65220702 65220721 -131974711 + ID_B1 SINE B4 90 223 -1 4 1082 465 19 0 0 chr1 65220858 65220912 -131974520 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1082 352 313 6 114 chr1 65221224 65221390 -131974042 + RSINE1 SINE B4 3 150 -15 4 1082 378 0 0 0 chr1 65221427 65221469 -131973963 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1082 468 250 0 65 chr1 65221521 65221645 -131973787 + PB1D10 SINE Alu 2 117 0 4 1082 24 32 0 0 chr1 65221697 65221728 -131973704 + AT_rich Low_complexity Low_complexity 1 31 0 4 1082 626 126 233 8 chr1 65222472 65222592 -131972840 + B1_Mus1 SINE Alu 2 148 0 4 1082 1872 153 245 26 chr1 65222735 65223204 -131972228 + RMER15 LTR ERVL 2 573 -2 4 1082 572 239 101 29 chr1 65227180 65227318 -131968114 + B1F2 SINE Alu 1 148 -1 4 1082 245 280 39 26 chr1 65227529 65227606 -131967826 - B4 SINE B4 -214 78 1 4 1082 653 235 30 73 chr1 65227978 65228143 -131967289 + RSINE1 SINE B4 8 165 0 4 1082 326 323 111 42 chr1 65228286 65228664 -131966768 - L2 LINE L2 -927 2492 2089 4 1082 564 222 17 17 chr1 65228824 65228943 -131966489 - ID_B1 SINE B4 -7 217 99 4 1082 320 381 19 13 chr1 65229159 65229316 -131966116 - L1M5 LINE L1 -480 5644 5487 4 1082 222 171 0 0 chr1 65229343 65229384 -131966048 + (CCA)n Simple_repeat Simple_repeat 3 43 0 4 1082 244 293 36 36 chr1 65229640 65229778 -131965654 + L1MA8 LINE L1 4145 4282 -1858 4 1082 442 222 14 0 chr1 65229950 65230063 -131965369 + B1_Mur3 SINE Alu 35 149 0 4 1082 362 232 81 0 chr1 65230070 65230169 -131965263 + PB1D7 SINE Alu 5 111 -9 4 1082 759 260 85 15 chr1 65230277 65230617 -131964815 + L1MA8 LINE L1 4726 5089 -1054 4 1082 212 93 47 0 chr1 65230627 65230670 -131964762 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 4 1082 270 0 0 0 chr1 65230691 65230721 -131964711 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1082 239 264 75 0 chr1 65230721 65230827 -131964605 + L1MA8 LINE L1 5115 5228 -915 4 1082 393 275 70 7 chr1 65230859 65231052 -131964380 + L1MA8 LINE L1 5815 6017 -283 4 1082 782 195 6 49 chr1 65231664 65231826 -131963606 + B3A SINE B2 1 155 -43 4 1082 198 281 98 0 chr1 65232615 65232697 -131962735 - MIRb SINE MIR -3 265 176 4 1082 244 368 19 0 chr1 65232742 65232848 -131962584 - MIRc SINE MIR -94 174 67 4 1082 202 266 12 25 chr1 65233354 65233435 -131961997 + G-rich Low_complexity Low_complexity 3 82 0 4 1082 21 0 0 0 chr1 65234218 65234239 -131961193 + GC_rich Low_complexity Low_complexity 1 21 0 4 1082 2446 135 24 24 chr1 65235217 65235628 -131959804 + MTC LTR MaLR 11 421 0 4 1082 255 238 36 36 chr1 65235653 65235736 -131959696 + CT-rich Low_complexity Low_complexity 1 83 0 4 1082 212 268 44 89 chr1 65235962 65236052 -131959380 + MIR SINE MIR 116 201 -61 4 1082 292 275 112 22 chr1 65237610 65237744 -131957688 - B1F SINE Alu 0 149 4 4 1082 280 238 178 0 chr1 65237830 65237931 -131957501 - PB1D9 SINE Alu 0 120 2 4 1082 222 170 0 0 chr1 65238233 65238257 -131957175 + T-rich Low_complexity Low_complexity 30 53 0 4 1082 1211 61 0 0 chr1 65238257 65238405 -131957027 - B1_Mus1 SINE Alu 0 148 1 4 1082 222 170 0 0 chr1 65238405 65238433 -131956999 + T-rich Low_complexity Low_complexity 2 29 0 4 1082 23 0 0 0 chr1 65238433 65238456 -131956976 + AT_rich Low_complexity Low_complexity 1 23 0 4 1082 495 299 64 19 chr1 65238456 65238613 -131956819 - B3A SINE B2 -6 192 29 4 1082 436 224 44 53 chr1 65239899 65240012 -131955420 + B1F SINE Alu 37 148 -1 4 1082 604 293 81 26 chr1 65241026 65241334 -131954098 - MER44A DNA MER2_type -11 328 4 4 1082 351 274 101 20 chr1 65242728 65242877 -131952555 - L1M5 LINE L1 -1323 4823 4663 4 1082 186 43 0 0 chr1 65242877 65242900 -131952532 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1082 827 109 39 0 chr1 65242900 65243028 -131952404 - B1_Mus1 SINE Alu -6 142 10 4 1082 289 242 52 10 chr1 65243034 65243130 -131952302 - L1M5 LINE L1 -1460 4686 4587 4 1082 207 139 0 0 chr1 65243919 65243955 -131951477 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 1082 28 22 0 22 chr1 65244164 65244193 -131951239 + AT_rich Low_complexity Low_complexity 1 29 0 4 1082 1235 27 0 7 chr1 65244193 65244341 -131951091 - B1_Mus2 SINE Alu 0 147 1 4 1082 28 22 0 22 chr1 65244341 65244357 -131951075 + AT_rich Low_complexity Low_complexity 1 16 0 4 1082 257 176 107 13 chr1 65244568 65244643 -131950789 - ERVL-B4-int LTR ERVL -5363 351 270 4 1082 889 202 116 11 chr1 65244807 65244997 -131950435 - B3 SINE B2 -5 211 2 4 1082 336 292 0 0 chr1 65245009 65245105 -131950327 - ERVL-B4-int LTR ERVL -5607 107 12 4 1082 561 273 43 21 chr1 65245239 65245426 -131950006 - MLT2C2 LTR ERVL -222 242 52 4 1082 802 143 7 36 chr1 65246037 65246175 -131949257 - B1_Mur3 SINE Alu -12 137 4 4 1082 21 0 0 0 chr1 65246796 65246817 -131948615 + AT_rich Low_complexity Low_complexity 1 21 0 4 1082 296 232 130 0 chr1 65247269 65247338 -131948094 - ID4_ SINE ID -2 81 4 4 1082 321 298 49 7 chr1 65247448 65247590 -131947842 + Lx9 LINE L1 7277 7424 -220 5 1082 471 18 0 0 chr1 65247617 65247673 -131947759 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1082 366 42 0 0 chr1 65247673 65247720 -131947712 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1082 1399 52 10 50 chr1 65247835 65248036 -131947396 - B2_Mm1t SINE B2 0 193 1 5 1082 23 0 0 0 chr1 65248042 65248065 -131947367 + AT_rich Low_complexity Low_complexity 1 23 0 5 1082 2397 157 33 93 chr1 65248213 65248978 -131946454 - RMER6C LTR ERVK 0 756 59 5 1082 838 145 21 35 chr1 65250064 65250207 -131945225 - B1_Mur4 SINE Alu 0 150 10 5 1082 729 275 128 16 chr1 65250448 65250698 -131944734 - MTEa LTR MaLR -2 377 100 5 1082 1520 189 76 27 chr1 65250698 65251084 -131944348 - RMER16 LTR ERVK 0 533 1 5 1082 292 258 16 0 chr1 65251084 65251138 -131944294 - MTEa LTR MaLR -274 105 51 5 1082 263 287 228 42 chr1 65251491 65251658 -131943774 - MIRb SINE MIR -45 223 26 5 1082 195 69 0 0 chr1 65251696 65251725 -131943707 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1082 21 36 0 0 chr1 65251823 65251851 -131943581 + AT_rich Low_complexity Low_complexity 1 28 0 5 1082 822 139 73 0 chr1 65251881 65252018 -131943414 - B1_Mur4 SINE Alu -1 149 3 5 1082 6096 127 23 48 chr1 65252766 65253840 -131941592 - L1_Mur2 LINE L1 -2754 3123 2061 5 1082 294 125 0 0 chr1 65253840 65253888 -131941544 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1082 6096 127 23 48 chr1 65253888 65254074 -131941358 - L1_Mur2 LINE L1 -3817 2060 1894 5 1082 3842 158 0 10 chr1 65254074 65254760 -131940672 + Lx5 LINE L1 4650 5328 -549 5 1082 2828 38 0 0 chr1 65254790 65255131 -131940301 - ORR1A1 LTR MaLR -5 341 1 5 1082 5639 93 19 19 chr1 65255131 65255960 -131939472 + Lx3A LINE L1 6151 6979 -2 5 1082 195 42 0 0 chr1 65255961 65255985 -131939447 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1082 5032 134 47 7 chr1 65255996 65257107 -131938325 + Lx5 LINE L1 5354 6513 -537 5 1082 3435 177 69 39 chr1 65257108 65258057 -131937375 - RLTR25B LTR ERVK 0 1028 5 5 1082 2494 190 19 63 chr1 65258058 65258625 -131936807 + Lx5 LINE L1 6509 7050 0 5 1082 495 248 133 23 chr1 65258692 65258820 -131936612 - B1F SINE Alu -7 142 1 5 1082 232 261 188 7 chr1 65258911 65259065 -131936367 - L1MC LINE L1 -471 5862 5681 5 1082 322 385 0 8 chr1 65259068 65259186 -131936246 - PB1D9 SINE Alu -3 117 1 5 1082 607 226 173 14 chr1 65259187 65259407 -131936025 - L1MC LINE L1 -653 5691 5437 5 1082 428 287 321 31 chr1 65259410 65260057 -131935375 - L2 LINE L2 -610 2809 1975 5 1082 216 0 0 0 chr1 65260701 65260725 -131934707 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5 1082 672 191 79 0 chr1 65260730 65260856 -131934576 - B1_Mur3 SINE Alu -13 136 1 5 1082 742 187 21 41 chr1 65260896 65261041 -131934391 + B1_Mur4 SINE Alu 3 144 -6 5 1082 26 0 0 0 chr1 65261071 65261097 -131934335 + AT_rich Low_complexity Low_complexity 1 26 0 5 1082 471 315 122 7 chr1 65261097 65261244 -131934188 - RSINE1 SINE B4 0 165 2 5 1082 269 242 30 0 chr1 65261271 65261337 -131934095 + MIRb SINE MIR 138 205 -63 5 1082 1851 127 37 31 chr1 65261366 65261692 -131933740 - ORR1A4 LTR MaLR 0 329 2 5 1082 885 245 99 40 chr1 65261859 65262161 -131933271 - MER58D DNA MER1_type -63 323 4 5 1082 327 275 72 18 chr1 65262737 65262848 -131932584 + PB1D10 SINE Alu 1 117 0 5 1082 706 186 63 14 chr1 65263220 65263362 -131932070 - B1_Mur3 SINE Alu 0 149 1 5 1082 21 0 0 0 chr1 65263368 65263389 -131932043 + AT_rich Low_complexity Low_complexity 1 21 0 5 1082 542 56 0 0 chr1 65265310 65265382 -131930050 + B1_Mus2 SINE Alu 76 147 0 5 1082 21 0 0 0 chr1 65265382 65265403 -131930029 + AT_rich Low_complexity Low_complexity 1 21 0 5 1082 772 277 51 69 chr1 65266704 65266979 -131928453 + B4A SINE B4 3 272 -20 5 1082 243 222 27 14 chr1 65267217 65267290 -131928142 - ORR1D1 LTR MaLR -34 340 267 5 1082 232 188 62 0 chr1 65267297 65267345 -131928087 - MTD LTR MaLR 0 419 369 5 1082 697 81 40 24 chr1 65267348 65267474 -131927958 + Lx9 LINE L1 7517 7644 0 5 1082 1991 172 18 18 chr1 65267503 65267887 -131927545 - MTD LTR MaLR -32 387 4 5 1082 593 272 30 25 chr1 65267925 65268142 -131927290 - ORR1D2 LTR MaLR -119 251 1 5 1082 242 322 65 24 chr1 65268228 65268352 -131927080 + MIRb SINE MIR 26 154 -114 5 1082 24 32 0 0 chr1 65269355 65269386 -131926046 + AT_rich Low_complexity Low_complexity 1 31 0 5 1082 916 76 14 57 chr1 65269761 65269901 -131925531 + B1_Mus1 SINE Alu 12 145 -3 5 1082 23 68 0 0 chr1 65271615 65271659 -131923773 + AT_rich Low_complexity Low_complexity 1 44 0 5 1082 547 228 250 28 chr1 65272973 65273149 -131922283 - B3 SINE B2 -1 215 1 5 1082 916 143 0 39 chr1 65273154 65273307 -131922125 - B1_Mur4 SINE Alu 0 150 4 5 1082 266 190 51 0 chr1 65273342 65273421 -131922011 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 1082 198 0 0 0 chr1 65273728 65273750 -131921682 + (GGCTG)n Simple_repeat Simple_repeat 4 25 0 5 1082 471 228 119 0 chr1 65273750 65273851 -131921581 + RSINE1 SINE B4 12 124 -41 5 1083 227 297 87 13 chr1 65274241 65274391 -131921041 - L1MA6 LINE L1 -136 6164 6004 5 1083 654 13 0 0 chr1 65274694 65274769 -131920663 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 1083 1236 209 40 83 chr1 65274769 65275046 -131920386 - B4A SINE B4 -1 291 27 5 1083 756 233 6 52 chr1 65275074 65275246 -131920186 - B3 SINE B2 0 216 53 5 1083 604 221 177 6 chr1 65275771 65275935 -131919497 - B3A SINE B2 -6 192 1 5 1083 1214 48 0 0 chr1 65276327 65276474 -131918958 + B1_Mus2 SINE Alu 1 147 0 5 1083 180 125 0 0 chr1 65276477 65276509 -131918923 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1083 599 225 8 0 chr1 65276968 65277088 -131918344 - RMER5 LTR ERV1 -21 513 393 5 1083 4723 74 168 3 chr1 65277950 65278651 -131916781 - L1_Mus4 LINE L1 -12 6624 5808 5 1083 24 0 0 0 chr1 65279035 65279059 -131916373 + AT_rich Low_complexity Low_complexity 1 24 0 5 1083 843 227 34 0 chr1 65279087 65279263 -131916169 - B3A SINE B2 -16 182 1 5 1083 445 236 0 53 chr1 65279273 65279367 -131916065 - B1_Mur3 SINE Alu -60 89 1 5 1083 930 149 142 114 chr1 65279690 65279909 -131915523 + URR1B DNA MER1_type 1 225 0 5 1083 2821 70 59 8 chr1 65282041 65282428 -131913004 + MTB_Mm LTR MaLR 1 407 0 5 1083 579 210 54 34 chr1 65282721 65282869 -131912563 - B3 SINE B2 0 216 66 5 1083 784 282 44 38 chr1 65283109 65283448 -131911984 - MER2 DNA MER2_type 0 345 5 5 1083 1485 265 87 39 chr1 65283524 65284039 -131911393 - RLTR17 LTR ERVK -48 644 105 5 1083 529 227 8 70 chr1 65284187 65284315 -131911117 + B1_Mur4 SINE Alu 1 120 0 5 1083 258 266 21 75 chr1 65285759 65285946 -131909486 - Lx9 LINE L1 -10 7634 7458 5 1083 572 287 29 52 chr1 65285942 65286214 -131909218 - Lx9 LINE L1 -127 7517 7252 5 1083 4060 163 38 10 chr1 65286211 65287089 -131908343 - Lx6 LINE L1 -1428 6032 5135 5 1083 2094 44 46 21 chr1 65287087 65287368 -131908064 + Lx3C LINE L1 6201 6488 -488 5 1083 2237 118 49 27 chr1 65287371 65287737 -131907695 + Lx3C LINE L1 6601 6974 -2 5 1083 687 183 36 12 chr1 65287754 65287920 -131907512 + L1_Mur2 LINE L1 4325 4494 -1383 5 1083 1315 111 26 0 chr1 65287971 65288161 -131907271 - B2_Mm2 SINE B2 0 195 1 5 1083 1995 199 145 16 chr1 65288231 65289138 -131906294 - L1_Mur3 LINE L1 -4314 1566 535 5 1083 306 0 0 0 chr1 65290299 65290333 -131905099 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1083 552 130 0 0 chr1 65290333 65290448 -131904984 + (GA)n Simple_repeat Simple_repeat 2 116 0 5 1083 355 256 65 59 chr1 65291300 65291470 -131903962 - RLTR13D3 LTR ERVK 0 1114 944 5 1083 592 244 8 8 chr1 65291916 65292040 -131903392 - B1F2 SINE Alu -20 129 6 5 1083 603 141 20 27 chr1 65294150 65294296 -131901136 + CT-rich Low_complexity Low_complexity 4 148 0 5 1083 390 62 0 0 chr1 65294296 65294344 -131901088 + (TCC)n Simple_repeat Simple_repeat 3 50 0 5 1083 600 64 32 0 chr1 65294344 65294438 -131900994 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 1083 667 260 66 146 chr1 65294439 65294849 -131900583 - MTE2a LTR MaLR -2 377 1 5 1083 260 300 86 0 chr1 65294849 65294919 -131900513 - PB1D9 SINE Alu -19 101 26 5 1083 237 65 0 0 chr1 65294920 65294951 -131900481 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1083 434 290 113 55 chr1 65295430 65295758 -131899674 - ORR1E LTR MaLR -12 347 1 5 1083 230 190 17 33 chr1 65295995 65296055 -131899377 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 5 1083 336 324 9 0 chr1 65296097 65296109 -131899323 - PB1D10 SINE Alu -1 116 8 5 1083 475 219 62 0 chr1 65296109 65296205 -131899227 - ID_B1 SINE B4 -34 190 89 5 1083 698 234 19 79 chr1 65297369 65297583 -131897849 - MTE2b LTR MaLR -14 365 165 5 1083 441 0 0 0 chr1 65298290 65298339 -131897093 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 1083 539 157 107 10 chr1 65298339 65298442 -131896990 - B1_Mur1 SINE Alu -12 137 25 5 1083 30 0 0 0 chr1 65299781 65299811 -131895621 + AT_rich Low_complexity Low_complexity 1 30 0 5 1083 236 352 87 75 chr1 65300531 65300945 -131894487 + L2a LINE L2 2664 3082 -337 5 1083 220 317 191 34 chr1 65300974 65301183 -131894249 + L2a LINE L2 3181 3422 -4 5 1083 1340 95 11 0 chr1 65302237 65302426 -131893006 + B2_Mm1t SINE B2 3 193 0 5 1083 291 247 85 12 chr1 65302731 65302813 -131892619 - BC1_Mm scRNA scRNA -64 88 1 5 1083 29 70 0 0 chr1 65303351 65303408 -131892024 + AT_rich Low_complexity Low_complexity 1 57 0 5 1083 270 177 31 31 chr1 65303526 65303590 -131891842 - B3 SINE B2 -6 210 147 5 1083 461 288 141 46 chr1 65304143 65304405 -131891027 + Charlie1a DNA MER1_type 1037 1323 -132 5 1083 21 57 0 0 chr1 65304851 65304886 -131890546 + AT_rich Low_complexity Low_complexity 1 35 0 6 1083 363 246 146 14 chr1 65305520 65305654 -131889778 - Kanga1d DNA Tc2 -4 605 454 6 1083 661 255 28 38 chr1 65305654 65305866 -131889566 + B3 SINE B2 1 210 -6 6 1083 291 113 0 0 chr1 65306120 65306173 -131889259 + (TTTTTG)n Simple_repeat Simple_repeat 5 57 0 6 1083 450 53 0 0 chr1 65307110 65307167 -131888265 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1083 2201 87 6 3 chr1 65307167 65307480 -131887952 - L1_Mus4 LINE L1 -2 6634 6321 6 1083 445 300 57 32 chr1 65307480 65307604 -131887828 - B4A SINE B4 -107 185 59 6 1083 204 40 0 0 chr1 65307790 65307815 -131887617 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 6 1083 824 235 188 20 chr1 65308221 65308525 -131886907 - MLT1A0 LTR MaLR 0 365 11 6 1083 803 236 70 25 chr1 65309040 65309240 -131886192 - B3 SINE B2 -6 210 2 6 1083 255 222 47 58 chr1 65310590 65310603 -131884829 - ID SINE ID -139 85 1 6 1083 307 206 68 0 chr1 65310603 65310676 -131884756 - ID4 SINE ID -5 78 1 6 1083 348 24 0 0 chr1 65311971 65312012 -131883420 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1083 380 310 54 8 chr1 65312014 65312144 -131883288 - RSINE1 SINE B4 -29 136 1 6 1083 258 302 58 0 chr1 65312994 65313080 -131882352 + Cheshire DNA MER1_type 174 264 -2156 6 1083 505 247 18 47 chr1 65313214 65313384 -131882048 + Lx7 LINE L1 7156 7320 -376 6 1083 459 125 0 0 chr1 65313388 65313460 -131881972 + (T)n Simple_repeat Simple_repeat 1 72 0 6 1083 255 219 56 19 chr1 65313533 65313640 -131881792 + Lx8 LINE L1 7331 7441 -32 6 1083 551 53 13 0 chr1 65313640 65313715 -131881717 + (TATG)n Simple_repeat Simple_repeat 3 78 0 6 1083 488 252 8 67 chr1 65313735 65313854 -131881578 + PB1D10 SINE Alu 6 117 0 6 1083 38 22 0 0 chr1 65314626 65314671 -131880761 + AT_rich Low_complexity Low_complexity 1 45 0 6 1083 1148 81 0 0 chr1 65314884 65315032 -131880400 - B1_Mus1 SINE Alu 0 148 1 6 1083 317 237 221 59 chr1 65315676 65315966 -131879466 - ORR1E LTR MaLR -2 377 1 6 1083 4347 63 0 31 chr1 65316620 65317192 -131878240 + L1_Mus1 LINE L1 6014 6567 0 6 1083 181 298 0 0 chr1 65317297 65317344 -131878088 + MIRc SINE MIR 63 109 -159 6 1083 31 82 0 0 chr1 65318844 65318917 -131876515 + AT_rich Low_complexity Low_complexity 1 73 0 6 1083 208 266 100 147 chr1 65319410 65319560 -131875872 + MIRc SINE MIR 112 254 -14 6 1083 412 255 64 0 chr1 65319759 65319853 -131875579 + PB1D10 SINE Alu 1 100 -17 6 1083 230 89 44 0 chr1 65322255 65322300 -131873132 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1083 518 171 51 15 chr1 65323410 65323519 -131871913 - B1_Mur4 SINE Alu -11 109 2 6 1083 276 296 0 73 chr1 65323519 65323546 -131871886 - MT2B LTR ERVL -444 157 140 6 1083 395 94 62 10 chr1 65323791 65323888 -131871544 + GA-rich Low_complexity Low_complexity 4 105 0 6 1083 3929 107 78 31 chr1 65323889 65324593 -131870839 + RMER17A2 LTR ERVK 170 906 0 6 1083 265 185 46 0 chr1 65324781 65324846 -131870586 - L1MB4 LINE L1 -19 6161 6094 6 1083 620 216 9 0 chr1 65324968 65325084 -131870348 + U2 snRNA snRNA 46 162 -26 6 1083 552 306 70 20 chr1 65325288 65325532 -131869900 - Lx8 LINE L1 -6 7467 7212 6 1083 322 200 24 24 chr1 65325606 65325688 -131869744 - LTR53 LTR ERVL -370 149 68 6 1083 393 221 94 19 chr1 65325720 65325777 -131869655 + RSINE1 SINE B4 12 77 -88 6 1083 333 0 0 0 chr1 65325777 65325814 -131869618 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1083 393 221 94 19 chr1 65325814 65325862 -131869570 + RSINE1 SINE B4 78 124 -41 6 1083 869 213 102 110 chr1 65325970 65326435 -131868997 + MT2A LTR ERVL 13 601 0 6 1083 722 147 8 0 chr1 65326776 65326905 -131868527 + CT-rich Low_complexity Low_complexity 4 133 0 6 1083 480 142 64 0 chr1 65327208 65327308 -131868124 - ORR1B1 LTR MaLR 0 394 258 6 1083 526 292 58 0 chr1 65328280 65328434 -131866998 + RSINE1 SINE B4 3 165 0 6 1083 410 316 131 84 chr1 65328483 65328818 -131866614 + MLT1A1 LTR MaLR 4 354 -54 6 1083 378 280 95 42 chr1 65330163 65330331 -131865101 - MER2 DNA MER2_type -158 187 11 6 1083 786 146 24 6 chr1 65330367 65330532 -131864900 + T-rich Low_complexity Low_complexity 5 172 0 6 1083 465 19 0 0 chr1 65330529 65330583 -131864849 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1083 876 97 37 0 chr1 65330583 65330717 -131864715 - B1_Mur3 SINE Alu -1 148 10 6 1083 243 0 0 0 chr1 65330848 65330875 -131864557 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1083 307 264 0 89 chr1 65331106 65331185 -131864247 + ID4 SINE ID 7 78 -5 6 1083 282 267 62 72 chr1 65331185 65331203 -131864229 + ID_B1 SINE B4 7 102 -122 6 1083 357 267 44 10 chr1 65332301 65332421 -131863011 + MLT1A0 LTR MaLR 194 331 -43 6 1083 225 94 0 0 chr1 65332421 65332453 -131862979 + (CCCCCT)n Simple_repeat Simple_repeat 1 32 0 6 1083 225 164 36 0 chr1 65332456 65332511 -131862921 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 6 1083 302 290 118 37 chr1 65332545 65332681 -131862751 - B4 SINE B4 0 292 146 6 1083 318 19 74 0 chr1 65332686 65332740 -131862692 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1083 5281 50 27 8 chr1 65332817 65333445 -131861987 - L1Md_F2 LINE L1 -2 6580 5941 6 1083 355 302 63 92 chr1 65333449 65333591 -131861841 - B4A SINE B4 -142 150 13 6 1083 456 260 0 20 chr1 65333607 65333705 -131861727 - B4 SINE B4 -194 98 3 6 1083 1888 139 11 118 chr1 65335137 65335503 -131859929 - ORR1A4 LTR MaLR 0 329 3 6 1083 24 32 0 0 chr1 65335587 65335618 -131859814 + AT_rich Low_complexity Low_complexity 1 31 0 6 1083 712 261 0 0 chr1 65335847 65335989 -131859443 + B1_Mus2 SINE Alu 1 142 -5 6 1083 210 37 0 0 chr1 65336099 65336126 -131859306 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 6 1083 7474 126 67 13 chr1 65336228 65337385 -131858047 - Lx4A LINE L1 -1 7057 5838 6 1083 680 164 29 0 chr1 65337511 65337615 -131857817 - PB1D7 SINE Alu -12 108 2 6 1083 517 279 95 27 chr1 65337630 65337925 -131857507 - L1ME2 LINE L1 -289 5875 5561 6 1083 23 54 0 0 chr1 65338562 65338599 -131856833 + AT_rich Low_complexity Low_complexity 1 37 0 6 1083 641 47 12 0 chr1 65338696 65338781 -131856651 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1083 474 18 0 0 chr1 65338781 65338835 -131856597 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1083 599 273 0 28 chr1 65338840 65338983 -131856449 - RSINE1 SINE B4 -19 146 8 6 1083 656 267 37 23 chr1 65338988 65339219 -131856213 - L1MA4A LINE L1 -349 5951 5720 6 1083 207 0 0 0 chr1 65339274 65339297 -131856135 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1083 580 282 138 19 chr1 65339657 65339917 -131855515 - B4A SINE B4 0 292 2 6 1083 414 42 0 53 chr1 65339925 65340000 -131855432 - L1_Mus4 LINE L1 0 6636 6566 6 1083 378 260 66 19 chr1 65340789 65340895 -131854537 - PB1D10 SINE Alu 0 117 7 6 1083 648 129 35 0 chr1 65341205 65341375 -131854057 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 6 1083 611 255 6 75 chr1 65341396 65341557 -131853875 - RSINE1 SINE B4 -2 163 14 6 1083 1434 63 34 6 chr1 65341831 65342006 -131853426 + B2_Mm2 SINE B2 2 181 -14 6 1083 222 37 0 0 chr1 65342006 65342033 -131853399 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 6 1083 441 0 0 0 chr1 65342299 65342348 -131853084 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1083 279 301 177 28 chr1 65342455 65342753 -131852679 - MLT1A0 LTR MaLR -9 356 8 6 1083 34 84 0 0 chr1 65342806 65342889 -131852543 + AT_rich Low_complexity Low_complexity 1 83 0 6 1083 842 183 199 6 chr1 65343601 65343777 -131851655 - B3 SINE B2 -6 210 1 6 1083 1933 138 27 1 chr1 65344148 65344478 -131850954 - Lx5 LINE L1 -1035 6015 5637 6 1083 3430 176 27 40 chr1 65344467 65345141 -131850291 + Lx4B LINE L1 6390 7054 -4 6 1083 26 30 0 0 chr1 65345483 65345516 -131849916 + AT_rich Low_complexity Low_complexity 1 33 0 6 1083 1490 79 16 26 chr1 65345523 65345717 -131849715 - B2_Mm2 SINE B2 -2 193 2 6 1083 201 195 0 0 chr1 65345898 65345939 -131849493 + (TGG)n Simple_repeat Simple_repeat 2 42 0 6 1083 504 328 54 69 chr1 65345952 65346369 -131849063 - RLTR26 LTR ERVK -176 466 24 6 1083 1292 140 74 19 chr1 65346396 65346666 -131848766 - Lx7 LINE L1 -48 7648 7364 6 1083 955 190 16 11 chr1 65346696 65346882 -131848550 - Lx7 LINE L1 -416 7280 7094 6 1083 249 243 0 0 chr1 65347277 65347347 -131848085 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1083 663 13 0 0 chr1 65347838 65347914 -131847518 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1083 913 285 45 49 chr1 65347919 65348207 -131847225 - B4A SINE B4 0 292 6 6 1083 8729 1 0 0 chr1 65348470 65349414 -131846018 - L1Md_A LINE L1 0 6582 5639 6 1083 273 135 0 0 chr1 65349513 65349550 -131845882 + PB1D9 SINE Alu 25 61 -59 6 1083 247 291 107 18 chr1 65349569 65349681 -131845751 + MER77 LTR ERVL 480 601 -6 6 1083 369 325 60 0 chr1 65350517 65350634 -131844798 - B1F SINE Alu -1 148 25 6 1083 820 184 19 54 chr1 65351383 65351568 -131843864 + MTD LTR MaLR 1 180 -241 6 1083 321 209 40 81 chr1 65351550 65351649 -131843783 + MTD LTR MaLR 292 386 -35 6 1083 750 32 0 0 chr1 65351761 65351855 -131843577 + LTRIS2 LTR ERV1 471 564 0 6 1083 1161 118 0 0 chr1 65351887 65352065 -131843367 + (TTTCC)n Simple_repeat Simple_repeat 1 178 0 6 1083 456 135 0 0 chr1 65352111 65352185 -131843247 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 6 1083 2320 231 30 28 chr1 65352185 65352914 -131842518 - Lx5 LINE L1 -23 7027 6455 6 1083 465 152 76 0 chr1 65352914 65353006 -131842426 - ORR1C1 LTR MaLR -277 101 3 7 1083 474 33 0 0 chr1 65353985 65354045 -131841387 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1083 248 320 133 0 chr1 65355435 65355510 -131839922 + B4 SINE B4 3 87 -205 7 1083 319 299 92 50 chr1 65355511 65355652 -131839780 + B1_Mur1 SINE Alu 3 149 0 7 1083 315 0 0 0 chr1 65355667 65355702 -131839730 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1083 290 216 54 0 chr1 65356508 65356582 -131838850 + ID4 SINE ID 6 83 0 7 1083 226 262 82 12 chr1 65356582 65356593 -131838839 + ID_B1 SINE B4 6 96 -128 7 1083 281 135 0 19 chr1 65356775 65356828 -131838604 + (CAT)n Simple_repeat Simple_repeat 2 53 0 7 1083 289 266 25 12 chr1 65356977 65357057 -131838375 + MLT1A0 LTR MaLR 121 201 -164 7 1083 423 0 0 0 chr1 65357401 65357448 -131837984 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 7 1083 324 0 0 0 chr1 65357563 65357599 -131837833 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1083 422 361 44 6 chr1 65359585 65359766 -131835666 - MER20 DNA MER1_type -30 189 2 7 1083 270 0 0 0 chr1 65359824 65359854 -131835578 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1083 382 244 99 27 chr1 65361072 65361267 -131834165 - MIRb SINE MIR -25 243 28 7 1083 194 62 31 0 chr1 65361930 65361962 -131833470 + (TTG)n Simple_repeat Simple_repeat 2 34 0 7 1083 507 56 0 0 chr1 65362323 65362394 -131833038 + (TCTCTG)n Simple_repeat Simple_repeat 3 73 0 7 1083 279 0 0 0 chr1 65362394 65362424 -131833008 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1083 279 0 0 0 chr1 65362874 65362905 -131832527 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7 1083 1056 125 0 0 chr1 65362905 65363041 -131832391 - B1_Mus1 SINE Alu -12 136 1 7 1083 1245 223 49 60 chr1 65363300 65363753 -131831679 - RLTR20B3 LTR ERVK -58 519 67 7 1083 385 266 102 24 chr1 65363866 65363993 -131831439 - MTE2a LTR MaLR -242 137 1 7 1083 183 80 0 0 chr1 65364873 65364898 -131830534 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1083 387 0 0 0 chr1 65364901 65364944 -131830488 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1083 323 346 112 45 chr1 65365003 65365245 -131830187 - B4A SINE B4 -32 260 3 7 1083 433 191 19 0 chr1 65366131 65366236 -131829196 + GA-rich Low_complexity Low_complexity 1 107 0 7 1083 231 368 9 17 chr1 65366950 65367066 -131828366 + Cheshire DNA MER1_type 7 121 -2299 7 1083 522 260 170 46 chr1 65367068 65367350 -131828082 + L1MC3 LINE L1 7257 7573 -212 7 1083 475 354 32 80 chr1 65368055 65368430 -131827002 - ORR1E LTR MaLR -2 357 1 7 1083 382 324 60 9 chr1 65369266 65369486 -131825946 - L1MEe LINE L1 -3312 2828 2598 7 1083 347 281 48 12 chr1 65369812 65369978 -131825454 - L1MB2 LINE L1 -3 6168 5997 7 1083 705 163 80 16 chr1 65370026 65370151 -131825281 - B1_Mur4 SINE Alu 0 150 18 7 1083 401 283 76 42 chr1 65370028 65370172 -131825260 - ID_B1 SINE B4 0 224 76 7 1083 287 239 26 52 chr1 65370187 65370302 -131825130 - L1MEe LINE L1 -3937 2229 2118 7 1083 640 233 39 0 chr1 65370379 65370508 -131824924 - B3 SINE B2 -2 214 81 7 1083 287 278 125 36 chr1 65370566 65370734 -131824698 - L1MEe LINE L1 -4179 1987 1805 7 1083 661 205 95 12 chr1 65371009 65371177 -131824255 + MTE-int LTR MaLR 297 478 -1102 7 1083 18097 147 66 7 chr1 65371181 65375505 -131819927 + L1VL1 LINE L1 469 5540 -633 7 1083 414 0 0 0 chr1 65375688 65375734 -131819698 + (CCTA)n Simple_repeat Simple_repeat 1 46 0 7 1083 2035 170 28 6 chr1 65376189 65376549 -131818883 - RLTR17 LTR ERVK -324 368 1 7 1083 498 125 74 37 chr1 65376549 65376657 -131818775 - RMER3D-int LTR ERVK 0 2842 2731 7 1083 234 0 0 0 chr1 65376659 65376685 -131818747 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 1083 1147 40 52 26 chr1 65376685 65376840 -131818592 - B2_Mm1t SINE B2 -33 160 2 7 1083 6479 200 63 48 chr1 65376841 65378664 -131816768 - RMER3D-int LTR ERVK -105 2737 363 7 1083 675 262 86 0 chr1 65378967 65379154 -131816278 + B3 SINE B2 1 203 -13 7 1083 326 291 0 18 chr1 65380510 65380543 -131814889 + (CAG)n Simple_repeat Simple_repeat 1 32 0 7 1083 378 107 0 0 chr1 65380543 65380599 -131814833 + (CAT)n Simple_repeat Simple_repeat 1 56 0 7 1083 326 291 0 18 chr1 65380599 65380677 -131814755 + (CAG)n Simple_repeat Simple_repeat 3 80 0 7 1083 959 320 74 67 chr1 65380976 65381528 -131813904 + MLT1E2 LTR MaLR 1 556 -71 7 1083 231 327 139 17 chr1 65381674 65381976 -131813456 - L2a LINE L2 -19 3407 3069 7 1083 762 326 57 65 chr1 65382122 65382598 -131812834 - MER70A LTR ERVL 0 472 1 7 1083 471 145 0 0 chr1 65382650 65382733 -131812699 + (GGA)n Simple_repeat Simple_repeat 1 83 0 7 1083 2249 99 11 70 chr1 65383853 65384211 -131811221 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1083 249 255 0 0 chr1 65384223 65384270 -131811162 + (CACG)n Simple_repeat Simple_repeat 1 47 0 7 1083 212 95 0 67 chr1 65384274 65384319 -131811113 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 7 1083 206 156 22 0 chr1 65385497 65385542 -131809890 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1083 233 321 9 60 chr1 65385544 65385660 -131809772 - B4A SINE B4 0 292 183 7 1083 217 327 0 0 chr1 65385667 65385719 -131809713 - B4A SINE B4 -215 77 26 7 1083 22 0 0 0 chr1 65385818 65385840 -131809592 + AT_rich Low_complexity Low_complexity 1 22 0 7 1083 589 282 46 46 chr1 65385851 65386048 -131809384 + B4A SINE B4 3 199 -93 7 1083 893 177 0 7 chr1 65386073 65386221 -131809211 + Lx5 LINE L1 6558 6704 -346 7 1083 1312 209 21 4 chr1 65386232 65386468 -131808964 + Lx5 LINE L1 6800 7039 -11 7 1083 696 228 20 13 chr1 65386740 65386891 -131808541 - Lx9 LINE L1 -432 7212 7061 7 1083 801 274 65 88 chr1 65386891 65387323 -131808109 + Lx9 LINE L1 7223 7644 0 7 1083 191 238 24 0 chr1 65387678 65387720 -131807712 - L2 LINE L2 -1162 2257 2215 7 1083 1306 279 48 49 chr1 65388112 65388739 -131806693 + L1M2 LINE L1 4158 4783 -1360 7 1083 358 308 169 20 chr1 65388800 65389095 -131806337 + L1MD2 LINE L1 5777 6115 -244 7 1083 1882 142 81 37 chr1 65389093 65389474 -131805958 + RMER1A Other Other 628 1025 -5 7 1083 22 0 0 0 chr1 65389652 65389674 -131805758 + AT_rich Low_complexity Low_complexity 1 22 0 7 1083 681 296 27 27 chr1 65390255 65390477 -131804955 - ID_B1 SINE B4 -2 222 1 7 1083 573 101 0 0 chr1 65391169 65391268 -131804164 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1083 734 194 4 0 chr1 65391448 65391696 -131803736 + CT-rich Low_complexity Low_complexity 1 249 0 7 1083 1254 54 0 7 chr1 65392450 65392599 -131802833 - B1_Mus1 SINE Alu 0 148 1 7 1083 192 77 0 0 chr1 65392667 65392693 -131802739 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 7 1083 1496 132 0 5 chr1 65395052 65395273 -131800159 - URR1A DNA MER1_type 0 226 7 7 1083 21 57 0 0 chr1 65395398 65395433 -131799999 + AT_rich Low_complexity Low_complexity 1 35 0 7 1083 1302 41 0 0 chr1 65395661 65395799 -131799633 + B1_Mm SINE Alu 1 138 -9 7 1083 262 0 26 26 chr1 65395799 65395838 -131799594 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 7 1083 596 257 55 74 chr1 65396032 65396098 -131799334 + B3A SINE B2 1 68 -130 7 1083 4753 68 2 0 chr1 65396098 65396669 -131798763 - L1Md_F2 LINE L1 0 6582 6011 7 1083 596 257 55 74 chr1 65396669 65396804 -131798628 + B3A SINE B2 69 198 0 7 1083 226 271 69 23 chr1 65397290 65397377 -131798055 - MLT1A1 LTR MaLR -4 404 314 7 1083 399 73 0 0 chr1 65398502 65398557 -131796875 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1083 285 286 0 0 chr1 65398557 65398618 -131796814 - ID2 SINE ID -12 71 11 7 1083 6281 97 62 16 chr1 65398618 65399557 -131795875 - Lx2A1 LINE L1 -4 7004 6023 7 1083 436 273 121 55 chr1 65399836 65400092 -131795340 + RMER2 LTR ERV1 290 562 -5 7 1083 1071 252 54 60 chr1 65400111 65400427 -131795005 + MTE2a LTR MaLR 57 370 -9 7 1083 3700 152 44 90 chr1 65400590 65401107 -131794325 - RLTR19B LTR ERVK -3 712 184 7 1083 1234 37 0 0 chr1 65401107 65401243 -131794189 + B1_Mus1 SINE Alu 1 136 -12 7 1083 3700 152 44 90 chr1 65401243 65401471 -131793961 - RLTR19B LTR ERVK -532 183 1 7 1083 402 178 0 0 chr1 65401543 65401633 -131793799 + GA-rich Low_complexity Low_complexity 1 90 0 7 1083 799 266 36 0 chr1 65402663 65402855 -131792577 - MTE2b LTR MaLR -180 199 1 7 1083 3012 64 93 9 chr1 65403702 65404142 -131791290 - RLTR44C LTR ERVK -25 477 1 7 1083 3326 51 76 0 chr1 65404142 65404667 -131790765 - RLTR44-int LTR ERVK 0 2812 2248 7 135 3634 80 83 58 chr1 65404668 65405300 -131790132 - RLTR44-int LTR ERVK -1420 1392 803 7 1084 451 78 0 0 chr1 65405300 65405356 -131790076 - RLTR44-int LTR ERVK -1922 890 835 7 1084 1170 186 138 46 chr1 65405356 65405660 -131789772 - IAPEY3_LTR LTR ERVK 0 332 1 7 1084 1445 192 55 15 chr1 65405660 65406003 -131789429 - IAPEz-int LTR ERVK 0 6481 6125 7 1084 1591 120 95 32 chr1 65406020 65406337 -131789095 - IAPEY3-int LTR ERVK -342 7338 6965 7 1084 1414 132 97 0 chr1 65406337 65406564 -131788868 - IAPEz-int LTR ERVK -1287 5255 5007 7 1084 325 193 0 0 chr1 65406564 65406621 -131788811 - IAPEz-int LTR ERVK -6039 503 447 7 1084 292 260 49 20 chr1 65406638 65406740 -131788692 - RMER16-int LTR ERVK -6015 1566 1462 7 1084 266 211 58 0 chr1 65406803 65406855 -131788577 - RMER16-int LTR ERVK -983 1004 950 7 1084 531 229 282 14 chr1 65406849 65407062 -131788370 - RMER16-int LTR ERVK -5474 663 394 7 1084 680 221 104 0 chr1 65407038 65407192 -131788240 - RMER16-int LTR ERVK -4903 503 334 7 1084 803 141 7 15 chr1 65407189 65407326 -131788106 - MMERVK10C-int LTR ERVK -6738 843 708 7 1084 1631 114 10 7 chr1 65407430 65407773 -131787659 - MMERVK10C-int LTR ERVK -7159 422 1 7 1084 1087 199 135 43 chr1 65407773 65408077 -131787355 - IAPEY3_LTR LTR ERVK 0 332 1 7 1084 408 74 0 0 chr1 65408077 65408131 -131787301 - RLTR44-int LTR ERVK -1943 869 816 7 1084 1012 135 44 54 chr1 65408140 65408343 -131787089 - RLTR44-int LTR ERVK -2611 201 1 7 1084 2502 131 7 159 chr1 65408343 65408916 -131786516 - RLTR44D LTR ERVK 0 486 1 7 1084 396 240 100 35 chr1 65409146 65409350 -131786082 - LTR37A LTR ERV1 -19 449 225 7 1084 4526 110 28 2 chr1 65410182 65410820 -131784612 - Lx3A LINE L1 -1 6980 6326 7 1084 3216 86 10 0 chr1 65411274 65411670 -131783762 + MTB LTR MaLR 1 400 0 7 1084 423 291 109 22 chr1 65411898 65412035 -131783397 - RSINE1 SINE B4 -15 150 2 7 1084 261 308 62 0 chr1 65412060 65412125 -131783307 - ID SINE ID -153 71 3 7 1084 405 0 0 0 chr1 65412568 65412613 -131782819 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1084 450 243 117 0 chr1 65412621 65412724 -131782708 - B1_Mur2 SINE Alu -29 120 6 7 1084 409 266 63 11 chr1 65414618 65414713 -131780719 + ID_B1 SINE B4 99 198 -26 7 1084 310 262 66 28 chr1 65414713 65414724 -131780708 + B1_Mus1 SINE Alu 19 128 -20 7 1084 531 90 0 0 chr1 65414724 65414791 -131780641 + RMER6-int LTR ERVK 1676 1742 -1435 7 1084 400 219 0 0 chr1 65414831 65414904 -131780528 + LSU-rRNA_Hsa rRNA rRNA 1777 1849 -3186 7 1084 3264 128 69 9 chr1 65414904 65415458 -131779974 + RMER6-int LTR ERVK 2591 3177 0 7 1084 1988 163 76 43 chr1 65415459 65415881 -131779551 + RMER6C LTR ERVK 2 437 -253 7 1084 381 309 141 38 chr1 65416546 65416942 -131778490 + MER99 DNA hAT? 1 437 -394 7 1084 1309 257 15 70 chr1 65417038 65417498 -131777934 - L1_Rod LINE L1 0 5847 5413 8 1084 368 290 96 38 chr1 65417478 65417808 -131777624 - L1M3 LINE L1 -837 5306 4973 8 1084 259 318 180 22 chr1 65417830 65418023 -131777409 + MIRb SINE MIR 2 218 -44 8 1084 2099 121 61 12 chr1 65420508 65420850 -131774582 - ORR1B2 LTR MaLR -8 359 1 8 1084 4322 156 31 4 chr1 65420850 65421618 -131773814 - ORR1B2-int LTR MaLR 0 1509 721 8 1084 321 213 0 0 chr1 65421566 65421627 -131773805 - B1_Mus2 SINE Alu -22 125 65 8 1084 541 90 0 25 chr1 65421625 65421705 -131773727 - ORR1B2-int LTR MaLR -1431 78 1 8 1084 1622 185 24 14 chr1 65421706 65422002 -131773430 - ORR1B2 LTR MaLR -1 366 68 8 1084 267 203 0 0 chr1 65422337 65422411 -131773021 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1084 1956 182 33 3 chr1 65422684 65423047 -131772385 + RLTR30 LTR ERV1 1 374 -5 8 1084 1964 186 34 6 chr1 65424543 65424899 -131770533 + RLTR30 LTR ERV1 9 374 -5 8 1084 376 289 32 96 chr1 65425333 65425490 -131769942 + MLT1E3 LTR MaLR 1 147 -507 8 1084 456 325 47 37 chr1 65425544 65425837 -131769595 + MLT1E3 LTR MaLR 352 638 -16 8 1084 544 323 104 68 chr1 65427114 65427562 -131767870 - MLT1F2 LTR MaLR -41 519 15 8 1084 627 329 105 28 chr1 65427715 65428000 -131767432 - MLT2B3 LTR ERVL -65 489 183 8 1084 518 245 60 24 chr1 65428187 65428354 -131767078 - Ricksha_c DNA MuDR -1521 527 355 8 1084 478 190 37 66 chr1 65428417 65428566 -131766866 + B1F2 SINE Alu 6 141 -8 8 1084 201 74 0 0 chr1 65428569 65428596 -131766836 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 8 1084 41 21 0 0 chr1 65428720 65428768 -131766664 + AT_rich Low_complexity Low_complexity 1 48 0 8 1084 5988 166 18 10 chr1 65428798 65429881 -131765551 - RMER12B LTR ERVK -301 1103 13 8 1084 648 117 60 53 chr1 65429895 65430047 -131765385 - RMER12B LTR ERVK -301 1103 976 8 1084 659 161 0 37 chr1 65430073 65430260 -131765172 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1084 661 312 83 30 chr1 65431134 65431471 -131763961 - RMER5 LTR ERV1 -125 409 55 8 1084 1284 95 0 0 chr1 65431725 65431968 -131763464 + (TG)n Simple_repeat Simple_repeat 1 243 0 8 1084 1068 82 0 58 chr1 65432055 65432210 -131763222 - B1_Mus1 SINE Alu -1 147 2 8 1084 366 312 9 9 chr1 65432967 65433077 -131762355 - MLT1A1 LTR MaLR 0 408 299 8 1084 388 256 165 60 chr1 65434000 65434249 -131761183 - MER67B LTR ERV1 -44 617 343 8 1084 577 110 18 0 chr1 65434260 65434369 -131761063 + (GA)n Simple_repeat Simple_repeat 2 112 0 8 1084 363 23 0 0 chr1 65434364 65434408 -131761024 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1084 315 0 0 0 chr1 65434408 65434443 -131760989 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1084 548 292 61 53 chr1 65434461 65434707 -131760725 - MER67B LTR ERV1 -413 248 1 8 1084 420 20 0 0 chr1 65435966 65436015 -131759417 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1084 211 234 31 15 chr1 65436342 65436407 -131759025 - MIR SINE MIR -10 252 187 8 1084 180 0 0 0 chr1 65436547 65436567 -131758865 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 1084 222 37 0 0 chr1 65436567 65436593 -131758839 + (CG)n Simple_repeat Simple_repeat 2 28 0 8 1084 2540 145 37 28 chr1 65437010 65437472 -131757960 - RMER4A LTR ERVK 0 466 1 8 1084 407 78 16 0 chr1 65437790 65437854 -131757578 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 1084 21 0 0 0 chr1 65437863 65437884 -131757548 + AT_rich Low_complexity Low_complexity 1 21 0 8 1084 477 341 104 66 chr1 65438497 65438656 -131756776 + MLT1D LTR MaLR 28 167 -338 8 1084 3334 80 29 44 chr1 65438656 65439112 -131756320 + L1_Mus2 LINE L1 6118 6566 0 8 1084 477 341 104 66 chr1 65439112 65439404 -131756028 + MLT1D LTR MaLR 168 496 -9 8 1084 253 256 172 8 chr1 65439654 65439776 -131755656 + L1_Mur3 LINE L1 4203 4344 -1536 8 1084 903 287 105 21 chr1 65439872 65440253 -131755179 + L1M2 LINE L1 4393 4814 -1329 8 1084 345 102 0 0 chr1 65440253 65440312 -131755120 + (ACTAG)n Simple_repeat Simple_repeat 5 63 0 8 1084 903 287 105 21 chr1 65440312 65440407 -131755025 + L1M2 LINE L1 4815 4909 -1234 8 1084 241 281 16 0 chr1 65442291 65442355 -131753077 + L1MD3 LINE L1 7582 7646 -349 8 1084 3684 102 89 6 chr1 65442359 65442874 -131752558 - LTRIS2 LTR ERV1 -4 560 3 8 1084 423 0 0 0 chr1 65443200 65443247 -131752185 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1084 329 104 0 0 chr1 65443569 65443617 -131751815 - L1MC1 LINE L1 -13 6320 6273 8 1084 4417 236 55 8 chr1 65443633 65444605 -131750827 + L1_Mur3 LINE L1 95 1108 -6620 8 1084 315 0 0 0 chr1 65444605 65444640 -131750792 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1084 4417 208 45 104 chr1 65444640 65444877 -131750555 + L1_Mur3 LINE L1 1109 1357 -4523 8 1084 1031 72 65 0 chr1 65444877 65445015 -131750417 + B1_Mus2 SINE Alu 1 147 0 8 1084 682 189 39 167 chr1 65445015 65445206 -131750226 + L1_Mur3 LINE L1 1358 1499 -4381 8 1084 2123 145 15 73 chr1 65445207 65445616 -131749816 + ORR1B1 LTR MaLR 2 386 -8 8 1084 4634 167 45 13 chr1 65445639 65446488 -131748944 + MERVL_2A-int LTR ERVL 4610 5485 -276 8 1084 5506 96 4 0 chr1 65446488 65447280 -131748152 + L1_Mur2 LINE L1 5067 5861 -16 8 1084 183 308 63 13 chr1 65447400 65447479 -131747953 - L2a LINE L2 -55 3371 3289 8 1084 824 241 24 47 chr1 65447544 65447757 -131747675 + MTD LTR MaLR 5 212 -207 8 1084 538 29 29 0 chr1 65447757 65447827 -131747605 - L1_Mus2 LINE L1 -300 6266 6195 8 1084 1652 73 41 0 chr1 65447827 65448072 -131747360 + L1_Mus2 LINE L1 6312 6566 0 8 1084 876 196 144 0 chr1 65448089 65448283 -131747149 + MTD LTR MaLR 196 417 -2 8 1084 501 269 38 8 chr1 65448377 65448508 -131746924 - RMER30 DNA MER1_type -58 144 10 8 1084 25 31 0 0 chr1 65448572 65448604 -131746828 + AT_rich Low_complexity Low_complexity 1 32 0 8 1084 301 264 27 0 chr1 65448823 65448901 -131746531 + ID4_ SINE ID 12 90 -62 8 1084 3444 211 137 15 chr1 65449603 65450587 -131744845 + Lx9 LINE L1 6380 7483 -161 8 1084 249 108 0 0 chr1 65450587 65450624 -131744808 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1084 407 106 26 103 chr1 65450629 65450694 -131744738 + Lx9 LINE L1 7411 7478 -166 8 1084 297 0 0 0 chr1 65450694 65450727 -131744705 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1084 407 106 26 103 chr1 65450727 65450777 -131744655 + Lx9 LINE L1 7479 7517 -127 8 1084 565 193 27 37 chr1 65450793 65450981 -131744451 + Lx9 LINE L1 7458 7643 -1 8 1084 2355 153 26 7 chr1 65451086 65451515 -131743917 - Lx2B LINE L1 0 7000 6564 8 1084 4592 184 26 63 chr1 65451778 65452715 -131742717 + RMER19B LTR ERVK 1 902 0 8 1084 366 271 54 104 chr1 65452763 65452985 -131742447 - RLTR31_Mm LTR ERVK 0 561 351 8 1084 3857 157 29 5 chr1 65452986 65453640 -131741792 - RLTR17 LTR ERVK -22 670 1 8 1084 562 205 8 64 chr1 65454595 65454630 -131740802 + MT2A LTR ERVL 1 34 -499 8 1084 3275 61 128 2 chr1 65454630 65455076 -131740356 + RLTR44C LTR ERVK 1 502 0 8 1084 562 205 8 64 chr1 65455076 65455165 -131740267 + MT2A LTR ERVL 35 118 -415 8 1084 1054 179 317 7 chr1 65455169 65455597 -131739835 + RLTR31_Mm LTR ERVK 1 561 0 8 1084 896 243 256 1 chr1 65455626 65455921 -131739511 + MT2A LTR ERVL 94 443 -90 8 1084 315 0 0 0 chr1 65455925 65455960 -131739472 + (CAAT)n Simple_repeat Simple_repeat 3 37 0 8 1084 216 208 21 0 chr1 65455977 65456025 -131739407 + GA-rich Low_complexity Low_complexity 2 50 0 8 1084 1141 151 108 24 chr1 65456103 65456354 -131739078 + MTC-int LTR MaLR 987 1258 0 8 1084 2066 185 26 38 chr1 65456354 65456780 -131738652 + MTC LTR MaLR 1 421 0 8 1084 1765 122 123 64 chr1 65457762 65458121 -131737311 - ORR1C2 LTR MaLR 0 384 5 8 1084 204 40 0 0 chr1 65458456 65458481 -131736951 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1084 38760 17 2 6 chr1 65458491 65464891 -131730541 - L1Md_A LINE L1 -1 6581 208 8 1084 548 279 63 68 chr1 65465669 65466035 -131729397 + Charlie1a DNA MER1_type 1047 1410 -45 8 1084 367 304 65 7 chr1 65466194 65466333 -131729099 - Lx8 LINE L1 -307 7166 7020 8 1084 2987 212 85 87 chr1 65466419 65467262 -131728170 + RMER21B LTR ERV1 1 842 0 8 1084 620 242 25 32 chr1 65467279 65467437 -131727995 - Lx8 LINE L1 -467 7006 6850 8 1084 558 191 147 0 chr1 65468542 65468678 -131726754 - Lx6 LINE L1 -507 6953 6798 8 1084 628 231 94 20 chr1 65468672 65468875 -131726557 + Lx6 LINE L1 7214 7431 -29 8 1084 195 42 0 0 chr1 65468875 65468899 -131726533 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 8 1084 338 248 32 24 chr1 65469074 65469198 -131726234 - Lx9 LINE L1 -1679 5965 5841 8 1084 1260 260 83 105 chr1 65469868 65470419 -131725013 - Lx8 LINE L1 -146 7327 6789 8 1084 37709 27 1 7 chr1 65470429 65476572 -131718860 - L1Md_T LINE L1 0 6582 483 8 1084 439 299 0 17 chr1 65476807 65476926 -131718506 + PB1D10 SINE Alu 1 117 0 8 1084 396 0 0 0 chr1 65477372 65477416 -131718016 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1084 234 150 0 24 chr1 65477531 65477572 -131717860 + MT2_Mm LTR ERVL 454 493 0 8 1084 567 29 0 0 chr1 65477921 65477990 -131717442 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 8 1084 1773 216 88 35 chr1 65478010 65478523 -131716909 - Lx9 LINE L1 -26 7618 7079 8 1084 660 94 66 0 chr1 65478530 65478636 -131716796 - ORR1A4 LTR MaLR 0 329 217 8 1084 414 0 0 0 chr1 65478643 65478689 -131716743 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1084 1827 193 147 22 chr1 65478692 65479148 -131716284 - RLTR20B3 LTR ERVK -44 533 21 8 1084 1344 162 34 8 chr1 65479152 65479404 -131716028 - ORR1A4 LTR MaLR -103 271 1 8 1084 319 203 0 0 chr1 65479405 65479469 -131715963 + Lx9 LINE L1 6920 6983 -661 8 1084 827 201 0 26 chr1 65479494 65479647 -131715785 - B1_Mur3 SINE Alu 0 149 1 8 1084 189 0 0 0 chr1 65479782 65479803 -131715629 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1084 235 80 19 39 chr1 65479865 65479917 -131715515 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1084 729 316 63 54 chr1 65480225 65480556 -131714876 + MTEa LTR MaLR 5 338 -41 8 1084 5006 142 43 53 chr1 65481831 65482822 -131712610 + RLTR22_Mur LTR ERVK 1 981 -867 8 1084 666 263 0 0 chr1 65482882 65483019 -131712413 - ID_B1 SINE B4 0 224 88 8 1084 225 0 0 0 chr1 65483768 65483793 -131711639 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1084 1032 142 0 43 chr1 65485893 65486000 -131709432 + RLTR22_Mur LTR ERVK 1592 1697 -151 8 1084 3234 43 5 2 chr1 65486000 65486395 -131709037 - MTA_Mm LTR MaLR 0 396 1 8 1084 1032 142 0 43 chr1 65486395 65486471 -131708961 + RLTR22_Mur LTR ERVK 1698 1767 -81 8 1084 9153 99 26 14 chr1 65486750 65489000 -131706432 + L1VL2 LINE L1 93 2371 -1244 8 1084 26897 124 14 13 chr1 65488989 65494843 -131700589 + L1_Mus3 LINE L1 794 6638 0 9 1084 499 216 29 10 chr1 65496528 65496631 -131698801 - RLTR23 LTR ERV1 -318 112 8 9 1084 403 244 28 146 chr1 65496660 65496804 -131698628 + B1_Mur1 SINE Alu 23 149 0 9 1084 407 239 0 0 chr1 65496834 65496905 -131698527 + ID4_ SINE ID 10 80 -3 9 1084 335 269 78 9 chr1 65496991 65497107 -131698325 + MLT1A0 LTR MaLR 6 129 -236 9 1084 2472 168 65 10 chr1 65497107 65497611 -131697821 - Lx5 LINE L1 -679 6371 5840 9 1084 932 132 48 0 chr1 65497599 65497765 -131697667 - Lx5 LINE L1 -148 5729 5556 9 1084 1509 254 149 10 chr1 65499081 65499644 -131695788 - Lx6 LINE L1 -598 6862 6219 9 1084 2332 111 6 0 chr1 65499644 65499969 -131695463 - ORR1A2 LTR MaLR 0 327 1 9 1084 1509 266 12 15 chr1 65499969 65500000 -131695432 - Lx6 LINE L1 -1242 6218 6190 9 1084 1257 204 163 8 chr1 65500000 65500380 -131695052 - Lx6 LINE L1 -1271 6189 5751 1 1084 807 206 128 31 chr1 65500380 65500575 -131694857 + URR1A DNA MER1_type 1 214 -12 2 1084 10987 161 30 11 chr1 65500589 65502765 -131692667 - Lx6 LINE L1 -149 5731 3513 1 1084 2629 187 12 26 chr1 65502756 65503338 -131692094 - Lx6 LINE L1 -3188 2692 2119 1 1084 1224 42 0 0 chr1 65503345 65503488 -131691944 + B1_Mm SINE Alu 1 143 -4 3 1084 894 19 0 0 chr1 65503491 65503595 -131691837 + (GAA)n Simple_repeat Simple_repeat 2 105 0 4 1084 2826 206 37 18 chr1 65503610 65504210 -131691222 + RLTR17 LTR ERVK 1 611 -81 5 1084 244 226 0 0 chr1 65504184 65504237 -131691195 + RLTR31_Mur LTR ERVK 501 553 0 6 1084 3382 178 49 22 chr1 65504246 65504294 -131691138 - Lx6 LINE L1 -3780 2100 2057 1 1084 348 24 0 0 chr1 65504294 65504335 -131691097 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1084 3382 193 44 40 chr1 65504335 65505595 -131689837 - Lx6 LINE L1 -3824 2056 859 1 1084 2401 204 110 14 chr1 65505797 65506424 -131689008 - Lx7 LINE L1 -1339 6357 5671 8 1084 1394 162 28 14 chr1 65506427 65506715 -131688717 - Lx7 LINE L1 -469 5411 5120 8 1084 720 254 31 26 chr1 65506726 65506920 -131688512 + Lx6 LINE L1 6333 6527 -933 9 1084 27 49 0 0 chr1 65507107 65507148 -131688284 + AT_rich Low_complexity Low_complexity 1 41 0 1 1084 313 226 67 19 chr1 65507363 65507467 -131687965 - L1MA7 LINE L1 -8 6283 6175 1 1084 3071 169 23 16 chr1 65507615 65507946 -131687486 + RLTR20B2 LTR ERVK 2 338 -222 1 1084 2877 46 3 0 chr1 65507946 65508291 -131687141 + ORR1A1 LTR MaLR 1 346 0 1 1084 3071 169 23 16 chr1 65508291 65508514 -131686918 + RLTR20B2 LTR ERVK 339 560 0 1 1084 225 0 0 0 chr1 65508626 65508651 -131686781 + (CAAGC)n Simple_repeat Simple_repeat 3 27 0 1 1084 3367 162 68 23 chr1 65509564 65510272 -131685160 + MYSERV16_I-int LTR ERVK 1 740 -1586 1 1084 7523 36 8 2 chr1 65510284 65511239 -131684193 - L1Md_F2 LINE L1 0 6582 5622 1 1084 7571 141 43 64 chr1 65511239 65512607 -131682825 + MYSERV16_I-int LTR ERVK 725 2129 -197 1 1084 291 28 0 0 chr1 65512607 65512643 -131682789 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1084 1219 41 0 0 chr1 65512650 65512797 -131682635 + B1_Mm SINE Alu 1 147 0 1 1084 7571 141 43 64 chr1 65512797 65513055 -131682377 + MYSERV16_I-int LTR ERVK 2130 2326 0 1 1084 2780 182 48 17 chr1 65513055 65513598 -131681834 + RLTR20B2 LTR ERVK 1 560 0 1 1084 358 316 103 63 chr1 65513836 65514137 -131681295 - L2 LINE L2 -2736 683 371 1 1084 654 13 0 0 chr1 65514608 65514683 -131680749 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 1084 562 328 16 0 chr1 65514684 65514809 -131680623 - RSINE1 SINE B4 -12 153 27 2 1084 1537 197 59 50 chr1 65515839 65516261 -131679171 - L1_Rod LINE L1 -144 5703 5278 2 1084 2020 130 111 6 chr1 65516265 65516598 -131678834 - ORR1B1 LTR MaLR 0 394 27 2 1084 354 136 68 0 chr1 65516598 65516657 -131678775 - L1_Rod LINE L1 -216 5631 5569 2 1084 8617 52 8 17 chr1 65517153 65518464 -131676968 - L1Md_A LINE L1 0 6582 5278 2 1084 183 42 0 0 chr1 65518464 65518488 -131676944 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2 1084 573 261 0 30 chr1 65518498 65518632 -131676800 - B1_Mur2 SINE Alu -18 131 2 2 1084 6391 206 34 71 chr1 65518632 65519203 -131676229 - L1Md_A LINE L1 -621 5262 4764 2 1084 246 62 0 0 chr1 65519203 65519235 -131676197 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1084 6391 206 34 71 chr1 65519235 65520071 -131675361 - L1Md_A LINE L1 -1120 4763 3930 2 1084 704 179 106 30 chr1 65520066 65520326 -131675106 + Lx9 LINE L1 5673 5974 -1670 2 1084 871 266 23 55 chr1 65520336 65520646 -131674786 + Lx9 LINE L1 6894 7193 -451 3 1084 518 310 38 85 chr1 65520785 65521059 -131674373 + B4A SINE B4 2 270 -22 3 1084 202 227 0 0 chr1 65521878 65521922 -131673510 + CT-rich Low_complexity Low_complexity 3 46 0 3 1084 213 267 200 0 chr1 65522834 65522894 -131672538 - ID2 SINE ID -9 74 3 3 1084 405 102 0 0 chr1 65522990 65523049 -131672383 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1084 21 36 0 0 chr1 65523526 65523554 -131671878 + AT_rich Low_complexity Low_complexity 1 28 0 3 1084 23 0 0 0 chr1 65523566 65523589 -131671843 + AT_rich Low_complexity Low_complexity 1 23 0 3 1084 523 202 0 16 chr1 65523733 65523859 -131671573 + Lx5 LINE L1 5893 6016 -1034 3 1084 210 203 34 0 chr1 65523859 65523873 -131671559 + (AATAG)n Simple_repeat Simple_repeat 1 15 0 3 1084 654 37 0 0 chr1 65523873 65523954 -131671478 + (GAGAA)n Simple_repeat Simple_repeat 3 83 0 3 1084 210 203 34 0 chr1 65523954 65523998 -131671434 + (AATAG)n Simple_repeat Simple_repeat 1 45 0 4 1084 907 262 36 31 chr1 65524030 65524463 -131670969 - L1_Rod LINE L1 -4415 1432 994 4 1084 986 53 13 32 chr1 65525131 65525287 -131670145 + (TTTCC)n Simple_repeat Simple_repeat 4 156 0 4 1084 459 0 0 0 chr1 65525288 65525339 -131670093 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 4 1084 437 50 17 0 chr1 65525401 65525461 -131669971 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 4 1084 620 252 16 0 chr1 65525975 65526102 -131669330 - ETnERV2-int LTR ERVK -204 7202 7074 4 1084 1023 343 91 29 chr1 65526517 65527003 -131668429 + MER76 LTR ERVL 5 520 -171 4 1084 857 269 211 4 chr1 65527061 65527322 -131668110 - ORR1E LTR MaLR -1 358 44 4 1084 241 361 12 0 chr1 65527333 65527416 -131668016 + MER76 LTR ERVL 605 688 -3 4 1084 15409 160 52 98 chr1 65528660 65531238 -131664194 + Lx2B LINE L1 743 2878 -2999 4 1084 8560 28 1 0 chr1 65531238 65532233 -131663199 + L1Md_T LINE L1 5587 6582 0 4 1084 15409 169 63 123 chr1 65532233 65532264 -131663168 + Lx2B LINE L1 2879 2893 -2984 4 1084 1207 114 6 6 chr1 65532264 65532440 -131662992 + B2_Mm2 SINE B2 1 176 -19 5 1084 15409 169 63 123 chr1 65532440 65532697 -131662735 + Lx2B LINE L1 2894 3125 -2752 4 1084 183 42 0 0 chr1 65532697 65532721 -131662711 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1084 15409 169 63 123 chr1 65532721 65534838 -131660594 + Lx2B LINE L1 3126 5468 -409 4 1084 1681 192 39 2 chr1 65534849 65535257 -131660175 - L1_Mur3 LINE L1 -636 5244 4822 5 135 4821 129 11 8 chr1 65535263 65536171 -131659261 + Lx2B LINE L1 5479 6386 -614 4 1085 709 92 2 5 chr1 65536171 65536290 -131659142 + B2_Mm2 SINE B2 2 118 -75 5 1085 288 291 152 8 chr1 65536270 65536388 -131659044 - RLTR18 LTR ERVK -479 137 3 5 1085 479 118 0 0 chr1 65536417 65536485 -131658947 + ORR1A4 LTR MaLR 254 321 -8 5 1085 992 32 0 0 chr1 65536978 65537143 -131658289 + L1Md_T LINE L1 6442 6582 0 5 1085 252 308 18 55 chr1 65537147 65537257 -131658175 + RMER4B LTR ERVK 4 109 -476 5 1085 610 171 133 44 chr1 65537446 65537581 -131657851 + B1_Mur4 SINE Alu 4 150 0 5 1085 260 294 23 23 chr1 65538160 65538247 -131657185 - MER5A1 DNA MER1_type -5 161 75 5 1085 1478 268 166 35 chr1 65538877 65539468 -131655964 - Lx8 LINE L1 -9 7464 6809 6 1085 645 14 0 0 chr1 65539468 65539542 -131655890 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1085 1478 268 166 35 chr1 65539542 65539751 -131655681 - Lx8 LINE L1 -665 6808 6561 6 1085 4350 79 7 2 chr1 65539767 65540349 -131655083 - L1_Mus2 LINE L1 0 6566 5982 6 1085 21 82 0 0 chr1 65540578 65540627 -131654805 + AT_rich Low_complexity Low_complexity 1 49 0 6 1085 242 185 12 36 chr1 65540792 65540876 -131654556 + CT-rich Low_complexity Low_complexity 1 82 0 6 1085 240 338 146 7 chr1 65540994 65541131 -131654301 + MLT1E1A LTR MaLR 1 156 -524 6 1085 5117 110 21 36 chr1 65541325 65542125 -131653307 + Lx LINE L1 5865 6652 -2 6 1085 288 0 0 0 chr1 65542167 65542199 -131653233 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1085 252 0 0 0 chr1 65542215 65542243 -131653189 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1085 415 261 79 7 chr1 65542408 65542547 -131652885 + MER67A LTR ERV1 395 543 0 6 1085 553 282 50 28 chr1 65543609 65543788 -131651644 - B3 SINE B2 0 216 34 7 1085 369 359 70 11 chr1 65544255 65544441 -131650991 + L1MC4 LINE L1 6641 6837 -1124 7 1085 2012 177 12 5 chr1 65544471 65544948 -131650484 + Lx6 LINE L1 5538 6024 -1672 7 1085 411 21 0 0 chr1 65544951 65544999 -131650433 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1085 1314 197 131 37 chr1 65545006 65545380 -131650052 + Lx6 LINE L1 6181 6589 -871 7 1085 3112 154 31 26 chr1 65545389 65545629 -131649803 + RMER6C LTR ERVK 101 342 -348 7 1085 943 77 13 19 chr1 65545629 65545787 -131649645 + (GAGAA)n Simple_repeat Simple_repeat 5 161 0 7 1085 3112 154 31 26 chr1 65545787 65546133 -131649299 + RMER6C LTR ERVK 343 689 -1 7 1085 2107 164 10 16 chr1 65546133 65546518 -131648914 + Lx6 LINE L1 6577 6959 -501 7 1085 4308 160 4 8 chr1 65546526 65547320 -131648112 - Lx LINE L1 -357 5526 4736 7 1085 6483 110 49 6 chr1 65547319 65548391 -131647041 + Lx LINE L1 5538 6654 0 7 1085 420 111 0 0 chr1 65548408 65548471 -131646961 + (GGA)n Simple_repeat Simple_repeat 3 65 0 7 1085 1501 202 19 6 chr1 65548582 65548906 -131646526 + Lx7 LINE L1 7369 7696 0 7 1085 25 51 0 0 chr1 65548977 65549016 -131646416 + AT_rich Low_complexity Low_complexity 1 39 0 7 1085 1215 48 0 0 chr1 65549017 65549162 -131646270 + B1_Mm SINE Alu 3 147 0 8 1085 496 295 65 35 chr1 65549263 65549495 -131645937 + L1MC4 LINE L1 7004 7242 -800 7 1085 2743 191 150 9 chr1 65549582 65549701 -131645731 - RMER1A Other Other -6 1024 872 8 1085 525 16 0 0 chr1 65549701 65549763 -131645669 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1085 2743 221 125 19 chr1 65549763 65550512 -131644920 - RMER1A Other Other -159 871 45 8 1085 2903 69 43 18 chr1 65550512 65550909 -131644523 - MTB_Mm LTR MaLR 0 407 1 8 1085 1274 295 42 94 chr1 65550909 65551263 -131644169 - RMER1B Other Other -706 360 7 8 1085 323 318 119 5 chr1 65551703 65551905 -131643527 + Lx8 LINE L1 7213 7437 -36 8 1085 516 321 73 28 chr1 65552074 65552415 -131643017 + MLT1C LTR MaLR 8 385 -82 8 1085 281 333 56 5 chr1 65552441 65552637 -131642795 + L1MC4 LINE L1 7641 7846 -36 7 1085 1914 206 27 51 chr1 65552633 65553145 -131642287 + Lx9 LINE L1 7139 7638 -6 8 1085 240 194 194 0 chr1 65553262 65553324 -131642108 - MTD LTR MaLR -13 406 333 8 1085 2581 148 32 90 chr1 65553327 65553861 -131641571 + RLTR28 LTR ERVL 1 503 -21 8 1085 1117 195 169 0 chr1 65553889 65554125 -131641307 - MTD LTR MaLR -96 323 48 8 1085 2239 26 0 0 chr1 65554125 65554396 -131641036 - L1Md_T LINE L1 -382 6200 5930 8 1085 1825 53 0 0 chr1 65554396 65554623 -131640809 + L1Md_T LINE L1 6356 6582 0 8 1085 248 217 16 16 chr1 65554627 65554688 -131640744 - MTD LTR MaLR -358 61 1 8 1085 490 286 174 25 chr1 65554710 65554953 -131640479 - B4A SINE B4 0 292 14 9 1085 536 368 100 26 chr1 65556144 65556495 -131638937 + MLT1E1A LTR MaLR 286 662 -18 9 1085 255 341 79 69 chr1 65557023 65557212 -131638220 + MLT1I LTR MaLR 204 394 -17 9 1085 23 0 0 0 chr1 65557603 65557626 -131637806 + AT_rich Low_complexity Low_complexity 1 23 0 9 1085 414 0 0 0 chr1 65559039 65559085 -131636347 + (TCCCC)n Simple_repeat Simple_repeat 2 47 0 9 1085 492 18 0 0 chr1 65559236 65559293 -131636139 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1085 225 152 0 0 chr1 65559467 65559507 -131635925 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1085 345 47 0 0 chr1 65559507 65559550 -131635882 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1085 1737 139 30 17 chr1 65559555 65559855 -131635577 + ORR1A4 LTR MaLR 17 320 -9 9 1085 471 112 0 0 chr1 65559855 65559944 -131635488 + (CAGA)n Simple_repeat Simple_repeat 2 90 0 9 1085 2625 210 21 15 chr1 65560111 65560642 -131634790 - RLTR20C LTR ERVK 0 534 1 1 1085 499 288 146 5 chr1 65561375 65561567 -131633865 - ID_B1 SINE B4 -3 221 3 1 1085 276 0 68 0 chr1 65561641 65561685 -131633747 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1085 382 307 93 33 chr1 65562263 65562445 -131632987 - L1M4 LINE L1 -1745 4401 4209 1 1085 880 258 90 7 chr1 65562490 65562767 -131632665 - Lx7 LINE L1 -1295 6401 6102 1 1085 1010 201 179 0 chr1 65562802 65563036 -131632396 + Lx7 LINE L1 6483 6758 -938 1 1085 403 362 32 13 chr1 65563039 65563193 -131632239 - B4A SINE B4 -86 206 50 1 1085 4534 106 6 5 chr1 65563332 65563994 -131631438 - L1Md_F2 LINE L1 -2 6580 5918 1 1085 32659 81 2 12 chr1 65564049 65570108 -131625324 - L1Md_F2 LINE L1 -12 6570 361 1 1085 215 367 0 8 chr1 65570169 65570263 -131625169 - L2a LINE L2 -17 3409 3268 1 1085 7333 45 8 0 chr1 65570700 65571871 -131623561 - L1Md_F3 LINE L1 -54 6530 5351 1 1085 988 132 98 5 chr1 65571878 65572083 -131623349 - RLTR19-int LTR ERVK -4879 1258 1035 1 1085 330 258 0 6 chr1 65572083 65572156 -131623276 - B4A SINE B4 -220 72 3 1 1085 357 276 151 55 chr1 65572159 65572397 -131623035 - L1MC LINE L1 -1975 4171 3911 1 1085 25 0 0 0 chr1 65572490 65572515 -131622917 + AT_rich Low_complexity Low_complexity 1 25 0 1 1085 411 98 0 0 chr1 65572565 65572626 -131622806 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1085 291 286 47 9 chr1 65572781 65572887 -131622545 - PB1D10 SINE Alu -7 110 1 1 1085 873 244 13 23 chr1 65572927 65573229 -131622203 + L1VL1 LINE L1 1 299 -6123 1 1085 376 255 0 0 chr1 65573220 65573314 -131622118 + L1Md_F3 LINE L1 335 428 -6191 1 1085 264 116 0 0 chr1 65573312 65573355 -131622077 + L1Md_F3 LINE L1 590 632 -5987 1 1085 33229 52 1 0 chr1 65573355 65578075 -131617357 + L1Md_F3 LINE L1 794 5570 -316 1 1085 1294 62 0 22 chr1 65578075 65578257 -131617175 + L1Md_F3 LINE L1 6396 6573 -14 1 1085 658 321 28 54 chr1 65578890 65579242 -131616190 - RLTR15 LTR ERVK -16 343 1 1 1085 28 0 0 0 chr1 65579824 65579852 -131615580 + AT_rich Low_complexity Low_complexity 1 28 0 1 1085 3521 87 0 0 chr1 65579889 65580386 -131615046 + L1Md_F LINE L1 435 931 -5588 1 1085 4637 83 0 20 chr1 65580387 65581035 -131614397 + L1Md_F2 LINE L1 5946 6580 -2 1 1085 219 284 135 11 chr1 65581080 65581169 -131614263 + MIRb SINE MIR 20 119 -149 1 1085 3364 132 35 6 chr1 65581338 65581888 -131613544 + Lx4A LINE L1 6473 7038 -20 1 1085 341 75 19 0 chr1 65581888 65581941 -131613491 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 1 1085 359 309 91 35 chr1 65582052 65582224 -131613208 + LTR82B Low_complexity ERVL 131 314 -516 1 1085 628 196 166 93 chr1 65582224 65582567 -131612865 - RLTR9A LTR ERVK 0 368 1 1 1085 359 309 91 35 chr1 65582567 65582592 -131612840 + LTR82B Low_complexity ERVL 315 339 -491 1 1085 316 244 51 0 chr1 65583881 65583959 -131611473 - LTR85c LTR Gypsy? -9 814 733 1 1085 331 331 0 70 chr1 65584056 65584228 -131611204 + RMER4A LTR ERVK 26 185 -281 1 1085 327 202 146 0 chr1 65585228 65585317 -131610115 - Lx9 LINE L1 -7 7637 7536 1 1085 1225 286 35 102 chr1 65585501 65585836 -131609596 - Tigger7 DNA MER2_type -2032 459 132 1 1085 1171 68 0 0 chr1 65585836 65585984 -131609448 + B1_Mus1 SINE Alu 1 148 0 1 1085 1225 286 35 102 chr1 65585984 65586102 -131609330 - Tigger7 DNA MER2_type -2360 131 34 1 1085 2755 62 5 112 chr1 65586102 65586539 -131608893 + RLTR10 LTR ERVK 1 390 0 1 1085 1225 286 35 102 chr1 65586539 65586563 -131608869 - Tigger7 DNA MER2_type -2458 33 13 1 1085 7665 34 1 0 chr1 65586563 65587500 -131607932 + RLTR10-int LTR ERVK 55 992 -995 1 1085 274 256 62 39 chr1 65587572 65587702 -131607730 + RLTR10-int LTR ERVK 1462 1594 -5987 1 1085 8430 15 0 2 chr1 65587786 65588783 -131606649 + RLTR10-int LTR ERVK 990 1984 -3 1 1085 2780 57 5 112 chr1 65588785 65589222 -131606210 + RLTR10 LTR ERVK 1 390 0 1 1085 654 286 20 43 chr1 65590341 65590644 -131604788 + L1MB3 LINE L1 5679 5974 -209 1 1085 297 75 0 0 chr1 65591449 65591489 -131603943 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1085 459 359 58 68 chr1 65591623 65591794 -131603638 - MLT1E2 LTR MaLR -94 533 373 1 1085 1266 42 77 12 chr1 65591794 65591963 -131603469 - B2_Mm2 SINE B2 -14 181 2 1 1085 459 359 58 68 chr1 65591963 65592084 -131603348 - MLT1E2 LTR MaLR -255 372 244 1 1085 1296 222 70 85 chr1 65592944 65593095 -131602337 - RLTR40 LTR ERVK -6 811 658 1 1085 297 0 0 0 chr1 65593095 65593128 -131602304 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1 1085 1296 222 70 85 chr1 65593128 65593375 -131602057 - RLTR40 LTR ERVK -160 657 421 1 1085 1311 162 79 29 chr1 65593437 65593716 -131601716 - RLTR40 LTR ERVK -523 294 2 1 1085 1871 169 125 14 chr1 65593718 65594071 -131601361 + ORR1B1 LTR MaLR 3 394 0 1 1085 192 295 33 0 chr1 65594110 65594171 -131601261 - MIRc SINE MIR -116 152 90 1 1085 1814 182 50 31 chr1 65594365 65594746 -131600686 + MTC LTR MaLR 3 390 -31 1 1085 408 40 0 0 chr1 65596662 65596712 -131598720 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1085 3549 222 54 86 chr1 65597814 65598264 -131597168 - Lx7 LINE L1 -1458 6238 5786 1 1085 1189 54 0 26 chr1 65598264 65598416 -131597016 - B1_Mus1 SINE Alu 0 148 1 1 1085 3549 172 31 86 chr1 65598416 65599189 -131596243 - Lx7 LINE L1 -93 5787 5044 1 1085 212 241 0 0 chr1 65599440 65599498 -131595934 + (CTG)n Simple_repeat Simple_repeat 3 60 0 1 1085 205 240 0 0 chr1 65599499 65599549 -131595883 + GA-rich Low_complexity Low_complexity 2 51 0 1 1085 846 183 0 0 chr1 65599608 65599772 -131595660 + GA-rich Low_complexity Low_complexity 4 167 0 1 1085 6760 167 56 19 chr1 65599773 65601266 -131594166 - Lx7 LINE L1 -822 5058 3510 1 1085 1540 163 68 6 chr1 65601262 65601426 -131594006 - Lx7 LINE L1 -2708 3172 2989 1 1085 369 0 0 0 chr1 65601426 65601467 -131593965 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1085 1540 163 68 6 chr1 65601467 65601654 -131593778 - Lx7 LINE L1 -2892 2988 2799 1 1085 29031 97 19 4 chr1 65601692 65607952 -131587480 + L1_Mus1 LINE L1 217 6566 -1 1 1085 257 277 15 0 chr1 65609609 65609674 -131585758 - MLT1H-int LTR MaLR -918 491 426 1 1085 752 263 37 5 chr1 65609813 65610000 -131585432 + B3 SINE B2 18 210 -6 1 1085 563 155 0 20 chr1 65610081 65610180 -131585252 - ORR1A2 LTR MaLR -230 97 1 1 1085 409 31 62 0 chr1 65610713 65610778 -131584654 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1085 1524 228 73 15 chr1 65610907 65611303 -131584129 + MTD LTR MaLR 1 419 0 1 1085 1884 92 0 17 chr1 65612337 65612625 -131582807 + Lx LINE L1 6372 6654 0 1 1085 379 409 50 21 chr1 65612743 65613023 -131582409 + LTR40a LTR ERVL 165 452 -67 1 1085 315 71 0 0 chr1 65613086 65613128 -131582304 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 1 1085 657 225 25 0 chr1 65613129 65613249 -131582183 - B1F2 SINE Alu -1 148 26 1 1085 22 0 0 0 chr1 65613564 65613586 -131581846 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 378 110 73 0 chr1 65613590 65613672 -131581760 - Lx9 LINE L1 -26 7618 7531 1 1085 248 321 104 6 chr1 65613672 65613835 -131581597 + RLTR21 LTR ERVK 1072 1250 -322 1 1085 2408 184 31 6 chr1 65613835 65614354 -131581078 - Lx9 LINE L1 -188 7456 6925 1 1085 1013 280 34 23 chr1 65614895 65615158 -131580274 + B4A SINE B4 7 272 -20 1 1085 339 113 0 0 chr1 65615159 65615212 -131580220 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1085 1179 283 44 10 chr1 65615324 65615713 -131579719 - Lx6 LINE L1 -26 7434 7033 1 1085 487 29 6 9 chr1 65616029 65616104 -131579328 - RLTR10 LTR ERVK -313 98 25 1 1085 1172 49 7 0 chr1 65616177 65616320 -131579112 + B1_Mus2 SINE Alu 1 144 -3 1 1085 207 0 0 0 chr1 65616320 65616343 -131579089 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1085 7960 33 2 8 chr1 65616378 65617381 -131578051 + RLTR10-int LTR ERVK 990 1986 -1 1 1085 3076 52 8 5 chr1 65617381 65617768 -131577664 + RLTR10 LTR ERVK 1 388 -2 1 1085 1053 180 36 36 chr1 65618455 65618680 -131576752 + URR1A DNA MER1_type 2 226 0 1 1085 198 0 0 0 chr1 65618842 65618864 -131576568 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1085 1159 278 67 42 chr1 65619179 65619539 -131575893 - MTE2b LTR MaLR 0 379 11 1 1085 476 320 34 53 chr1 65619549 65619757 -131575675 + MLT1C LTR MaLR 143 346 -121 1 1085 3427 109 0 20 chr1 65620311 65620808 -131574624 + Lx LINE L1 6167 6653 -1 1 1085 2486 163 5 15 chr1 65620898 65621309 -131574123 - MTB_Mm LTR MaLR 0 407 1 1 1085 568 287 161 27 chr1 65622040 65622343 -131573089 - MTEb LTR MaLR -36 343 1 1 1085 288 264 14 14 chr1 65623610 65623683 -131571749 - MLT1B LTR MaLR -6 384 312 1 1085 252 292 14 0 chr1 65623684 65623756 -131571676 - MER89 LTR ERV1 -263 296 224 1 1085 257 307 68 0 chr1 65623765 65623853 -131571579 - MER89 LTR ERV1 -464 95 2 1 1085 413 317 48 26 chr1 65624616 65624843 -131570589 + Lx9 LINE L1 7225 7456 -188 1 1085 506 43 14 0 chr1 65624843 65624912 -131570520 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1085 195 42 0 0 chr1 65625098 65625122 -131570310 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1085 398 287 38 13 chr1 65626014 65626173 -131569259 - LTR37A LTR ERV1 0 426 264 1 1085 277 233 121 11 chr1 65626230 65626321 -131569111 - LTR37A LTR ERV1 -248 178 78 1 1085 333 68 0 0 chr1 65626640 65626684 -131568748 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1085 414 0 0 0 chr1 65626684 65626730 -131568702 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1085 749 276 31 108 chr1 65626732 65627020 -131568412 - B4 SINE B4 -18 274 9 1 1085 2804 98 87 0 chr1 65627052 65627630 -131567802 - L1_Mus3 LINE L1 -662 5976 5362 1 1085 4366 84 32 3 chr1 65627630 65628253 -131567179 + L1_Mus3 LINE L1 5996 6636 -2 1 1085 1429 23 0 0 chr1 65628911 65629082 -131566350 + B2_Mm1t SINE B2 1 171 -22 1 1085 195 42 0 0 chr1 65629086 65629110 -131566322 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1085 7326 97 12 0 chr1 65630090 65631760 -131563672 - L1_Mus3 LINE L1 0 6638 4946 1 1085 2516 132 38 57 chr1 65631767 65632297 -131563135 - L1_Mur3 LINE L1 -1404 4476 3957 1 1085 195 42 0 0 chr1 65632535 65632559 -131562873 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1085 255 333 85 39 chr1 65632808 65632961 -131562471 - MLT2B1 LTR ERVL -379 177 18 1 1085 287 323 78 15 chr1 65633163 65633367 -131562065 - L1ME1 LINE L1 -267 5912 5696 1 1085 410 155 0 0 chr1 65633544 65633615 -131561817 + RMER6B LTR ERVK 1 71 -390 1 1085 2401 174 48 62 chr1 65633617 65634198 -131561234 + RLTR22_Mur LTR ERVK 3 575 -1273 1 1085 396 0 0 0 chr1 65634230 65634274 -131561158 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1085 717 309 81 40 chr1 65634282 65634555 -131560877 - B4A SINE B4 0 292 9 1 1085 37 23 0 0 chr1 65634572 65634616 -131560816 + AT_rich Low_complexity Low_complexity 1 44 0 2 1085 8100 88 63 30 chr1 65634616 65635924 -131559508 - Lx3_Mus LINE L1 -8 7001 5650 2 1085 5979 96 8 1 chr1 65635924 65636839 -131558593 - L1_Mur1 LINE L1 -3027 2859 1939 2 1085 307 312 160 40 chr1 65636992 65637192 -131558240 - ID_B1 SINE B4 0 224 1 2 1085 1268 275 65 0 chr1 65637937 65638293 -131557139 + MTEb LTR MaLR 1 379 0 2 1085 675 67 0 0 chr1 65638365 65638454 -131556978 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1085 2367 226 65 0 chr1 65638460 65639012 -131556420 - RMER1B Other Other -14 1052 465 2 1085 225 317 98 86 chr1 65639080 65639325 -131556107 + RLTR16 LTR ERVK 44 291 -214 2 1085 3338 222 13 11 chr1 65639489 65640384 -131555048 + L1VL4 LINE L1 149 917 -5385 2 1085 11949 95 21 2 chr1 65640390 65642812 -131552620 + L1_Mus1 LINE L1 4025 6493 -74 2 1085 1599 132 0 0 chr1 65642798 65643049 -131552383 - MusHAL1 LINE L1 -3103 251 1 2 1085 410 320 0 0 chr1 65643122 65643244 -131552188 - Lx8 LINE L1 -863 6610 6489 2 1085 24 32 0 0 chr1 65643574 65643605 -131551827 + AT_rich Low_complexity Low_complexity 1 31 0 2 1085 680 304 29 10 chr1 65643903 65644112 -131551320 - RLTR18B LTR ERVK -49 463 251 2 1085 33 25 0 0 chr1 65644112 65644152 -131551280 + AT_rich Low_complexity Low_complexity 1 40 0 2 1085 840 305 33 30 chr1 65644242 65644543 -131550889 - RLTR18 LTR ERVK -302 314 13 2 1085 1325 92 4 13 chr1 65645193 65645424 -131550008 - Lx LINE L1 -50 6604 6376 2 1085 1300 206 141 35 chr1 65646176 65646523 -131548909 + ORR1C2 LTR MaLR 1 384 0 2 1085 284 270 34 4 chr1 65646601 65646705 -131548727 + PB1D7 SINE Alu 3 114 -6 2 1085 255 79 0 0 chr1 65646936 65646974 -131548458 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1085 189 321 59 12 chr1 65646985 65647070 -131548362 + MIRb SINE MIR 117 205 -63 2 1085 792 277 74 52 chr1 65647142 65647599 -131547833 - L1MA10 LINE L1 -40 6294 5828 2 1085 2914 75 42 0 chr1 65648009 65648393 -131547039 - MTB LTR MaLR 0 400 1 2 1085 373 316 66 28 chr1 65649276 65649458 -131545974 + MER5A DNA MER1_type 1 189 0 2 1085 648 291 51 17 chr1 65649513 65649688 -131545744 + B3A SINE B2 10 190 -8 2 1085 21 36 0 0 chr1 65649688 65649716 -131545716 + AT_rich Low_complexity Low_complexity 1 28 0 2 1085 22 35 0 0 chr1 65650316 65650345 -131545087 + AT_rich Low_complexity Low_complexity 1 29 0 2 1085 411 21 0 0 chr1 65650863 65650911 -131544521 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1085 22 0 0 0 chr1 65650911 65650933 -131544499 + AT_rich Low_complexity Low_complexity 1 22 0 2 1085 230 281 98 30 chr1 65650936 65651068 -131544364 + MIR SINE MIR 110 250 -12 2 1085 3448 176 69 22 chr1 65651107 65651788 -131543644 - RMER19B LTR ERVK 0 902 190 2 1085 517 52 65 0 chr1 65651788 65651865 -131543567 - RMER19B LTR ERVK -820 82 1 2 1085 297 220 28 0 chr1 65651945 65652054 -131543378 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1085 2156 114 3 51 chr1 65652317 65652687 -131542745 - L1Md_F2 LINE L1 0 6582 6231 2 1085 1436 185 96 0 chr1 65652695 65652987 -131542445 - IAPEY3_LTR LTR ERVK -12 320 1 2 1085 657 38 0 0 chr1 65652987 65653067 -131542365 - L1Md_F2 LINE L1 -346 6236 6157 2 1085 304 242 78 31 chr1 65653154 65653282 -131542150 - MIRb SINE MIR -56 212 79 2 1085 395 340 61 44 chr1 65653594 65653822 -131541610 + L1M5 LINE L1 5466 5697 -543 2 1085 379 278 0 0 chr1 65653836 65653908 -131541524 + RSINE1 SINE B4 3 74 -91 2 1085 322 251 17 23 chr1 65654413 65654588 -131540844 + (CATATA)n Simple_repeat Simple_repeat 6 179 0 2 1085 40 67 0 0 chr1 65654885 65654960 -131540472 + AT_rich Low_complexity Low_complexity 1 75 0 2 1085 2713 84 10 8 chr1 65655203 65655587 -131539845 - Lx3_Mus LINE L1 0 7009 6625 2 1085 406 245 41 0 chr1 65655944 65656042 -131539390 + RMER20B LTR ERVK 1 102 -525 2 1085 15197 193 27 80 chr1 65656044 65656095 -131539337 + Lx5 LINE L1 2000 2050 -3836 2 1085 369 0 0 0 chr1 65656095 65656136 -131539296 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1085 15197 193 27 80 chr1 65656136 65656167 -131539265 + Lx5 LINE L1 2051 2080 -3806 2 1085 369 0 0 0 chr1 65656167 65656208 -131539224 + (CCA)n Simple_repeat Simple_repeat 1 41 0 2 1085 15197 192 31 64 chr1 65656208 65657876 -131537556 + Lx5 LINE L1 2081 3779 -3271 2 1085 1269 206 25 36 chr1 65657876 65658153 -131537279 - RLTR46 LTR ERVK -5 315 42 2 1085 15197 192 31 64 chr1 65658153 65661213 -131534219 + Lx5 LINE L1 3780 6899 -151 2 1085 459 0 0 0 chr1 65661213 65661264 -131534168 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1085 6611 190 43 18 chr1 65661264 65661417 -131534015 + Lx5 LINE L1 6900 7048 -2 2 1085 793 56 8 0 chr1 65661940 65662065 -131533367 + L1_Mus4 LINE L1 6511 6636 0 2 1085 408 174 142 21 chr1 65662734 65662748 -131532684 - Lx2 LINE L1 -1 6996 6983 2 1085 456 19 0 0 chr1 65662748 65662801 -131532631 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2 1085 408 174 142 21 chr1 65662801 65662927 -131532505 - Lx2 LINE L1 -15 6982 6840 2 1085 4773 119 69 12 chr1 65662929 65663767 -131531665 + Lx3B LINE L1 5683 6568 -405 2 1085 4030 121 5 13 chr1 65663767 65664396 -131531036 + L1_Mus4 LINE L1 6013 6636 0 2 1085 1212 111 16 6 chr1 65664403 65664585 -131530847 + MT2C_Mm LTR ERVL 292 475 0 2 1085 377 188 0 12 chr1 65664598 65664679 -131530753 - L1_Mur3 LINE L1 -270 5610 5531 2 1085 6499 115 8 4 chr1 65664668 65665729 -131529703 + L1_Mur1 LINE L1 4511 5576 -310 2 1085 3673 28 28 0 chr1 65665759 65666183 -131529249 - RLTR10C LTR ERVK 0 436 1 2 135 7535 42 2 49 chr1 65666183 65667165 -131528267 - MMERVK10C-int LTR ERVK 0 7581 6646 2 1086 41507 43 0 1 chr1 65667151 65672096 -131523336 - MMERVK10C-int LTR ERVK -1771 5810 870 2 1086 1394 91 34 7 chr1 65672094 65672397 -131523035 - MMERVK10C-int LTR ERVK -7182 399 1 2 1086 3608 33 28 0 chr1 65672397 65672821 -131522611 - RLTR10C LTR ERVK 0 436 1 2 1086 4593 143 12 8 chr1 65672821 65673587 -131521845 - Lx2 LINE L1 -670 6327 5587 2 1086 2731 99 33 15 chr1 65673583 65674016 -131521416 + MusHAL1 LINE L1 580 1014 -2339 2 1086 234 0 0 0 chr1 65674016 65674042 -131521390 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1086 2731 98 35 15 chr1 65674042 65674132 -131521300 + MusHAL1 LINE L1 1015 1116 -2237 2 1086 6629 72 143 14 chr1 65674132 65674198 -131521234 + L1_Mus1 LINE L1 224 289 -6349 2 1086 1032 53 0 0 chr1 65674198 65674329 -131521103 + (TTCTC)n Simple_repeat Simple_repeat 3 133 0 2 1086 2771 45 65 0 chr1 65674329 65674681 -131520751 - L1Md_F2 LINE L1 -19 6563 6189 2 1086 6629 80 78 9 chr1 65674681 65676418 -131519014 + L1_Mus1 LINE L1 290 2157 -3726 2 1086 14770 97 12 6 chr1 65676412 65678689 -131516743 + L1_Mus1 LINE L1 3653 5943 -624 2 1086 1294 92 0 0 chr1 65678694 65678889 -131516543 - L1Md_F2 LINE L1 -16 6566 6372 2 1086 1328 81 0 0 chr1 65678887 65679061 -131516371 - L1_Mus1 LINE L1 -454 6113 5940 2 1086 3503 92 0 12 chr1 65679062 65679545 -131515887 + L1_Mus1 LINE L1 6090 6566 -1 2 1086 279 322 33 22 chr1 65679647 65679739 -131515693 + B3 SINE B2 104 196 -20 2 1086 486 214 19 0 chr1 65679739 65679842 -131515590 + ORR1B1 LTR MaLR 1 105 -289 2 1086 3189 190 91 12 chr1 65679841 65680503 -131514929 + RMER19B LTR ERVK 5 718 -184 2 1086 403 297 0 0 chr1 65680503 65680604 -131514828 - Lx6 LINE L1 -336 7124 7024 2 1086 1367 237 45 10 chr1 65680591 65680765 -131514667 + Lx6 LINE L1 6709 6896 -564 2 1086 813 93 0 0 chr1 65680765 65680894 -131514538 + (GA)n Simple_repeat Simple_repeat 2 130 0 2 1086 1367 237 45 10 chr1 65680894 65681030 -131514402 + Lx6 LINE L1 6897 7030 -430 2 1086 223 211 18 0 chr1 65681107 65681164 -131514268 + T-rich Low_complexity Low_complexity 6 63 0 2 1086 1204 124 15 10 chr1 65681282 65681483 -131513949 - B2_Mm2 SINE B2 -2 214 1 2 1086 2252 26 0 0 chr1 65681729 65681993 -131513439 - L1Md_F2 LINE L1 -2 6580 6317 2 1086 22 35 0 0 chr1 65682524 65682553 -131512879 + AT_rich Low_complexity Low_complexity 1 29 0 2 1086 2341 200 45 18 chr1 65682751 65683052 -131512380 - RLTR11A2 LTR ERVK 0 527 213 2 1086 3262 46 5 0 chr1 65683052 65683446 -131511986 - MTA_Mm LTR MaLR 0 396 1 2 1086 2341 200 45 18 chr1 65683446 65683657 -131511775 - RLTR11A2 LTR ERVK -315 212 1 2 1086 525 283 203 11 chr1 65683801 65684062 -131511370 + Lx8 LINE L1 6962 7272 -201 2 1086 588 14 0 0 chr1 65684062 65684131 -131511301 + (TAAG)n Simple_repeat Simple_repeat 3 71 0 2 1086 320 248 35 14 chr1 65685121 65685264 -131510168 + (TA)n Simple_repeat Simple_repeat 2 147 0 2 1086 347 320 26 19 chr1 65686006 65686162 -131509270 - L1ME1 LINE L1 -7 6172 6016 2 1086 355 356 36 20 chr1 65686177 65686345 -131509087 - L1MD LINE L1 -528 5714 5545 2 1086 309 109 0 0 chr1 65686345 65686391 -131509041 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1086 355 356 36 20 chr1 65686391 65686417 -131509015 - L1MD LINE L1 -698 5544 5517 2 1086 450 340 39 57 chr1 65686587 65686881 -131508551 + B4 SINE B4 2 274 -18 2 1086 22 0 0 0 chr1 65687945 65687967 -131507465 + AT_rich Low_complexity Low_complexity 1 22 0 2 1086 372 43 0 0 chr1 65688335 65688381 -131507051 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1086 906 284 81 11 chr1 65688384 65688644 -131506788 - B4A SINE B4 -14 278 1 2 1086 360 0 0 0 chr1 65689410 65689450 -131505982 + (ATG)n Simple_repeat Simple_repeat 3 42 0 2 1086 285 29 0 0 chr1 65690462 65690496 -131504936 + (CAAG)n Simple_repeat Simple_repeat 1 34 0 2 1086 184 365 94 17 chr1 65691693 65691874 -131503558 + MIRb SINE MIR 16 210 -58 2 1086 21 36 0 0 chr1 65692899 65692927 -131502505 + AT_rich Low_complexity Low_complexity 1 28 0 2 1086 2788 62 3 3 chr1 65693077 65693447 -131501985 - L1Md_F2 LINE L1 0 6582 6213 2 1086 1424 83 0 0 chr1 65693447 65693627 -131501805 + L1Md_F2 LINE L1 6038 6217 -365 2 1086 222 304 51 17 chr1 65693949 65694066 -131501366 - MIRc SINE MIR -138 130 10 2 1086 245 239 32 64 chr1 65694356 65694450 -131500982 - PB1D7 SINE Alu 0 120 30 2 1086 607 290 77 6 chr1 65694568 65694738 -131500694 + B3 SINE B2 35 216 0 2 1086 182 37 37 0 chr1 65695182 65695209 -131500223 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1086 1121 57 0 0 chr1 65695211 65695352 -131500080 - B1_Mus2 SINE Alu -6 141 1 2 1086 235 343 65 24 chr1 65695800 65695970 -131499462 - LTR80A LTR ERVL -232 351 175 2 1086 243 333 20 46 chr1 65696096 65696112 -131499320 + ID_B1 SINE B4 78 224 0 2 1086 388 273 30 22 chr1 65696112 65696247 -131499185 + B1F1 SINE Alu 13 148 -1 2 1086 821 303 43 11 chr1 65696632 65696909 -131498523 + B4A SINE B4 1 286 -6 2 1086 558 0 0 0 chr1 65696949 65697011 -131498421 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1086 1002 188 74 13 chr1 65697437 65697716 -131497716 - MTC LTR MaLR -4 415 1 2 1086 298 297 47 56 chr1 65697737 65697969 -131497463 - L1M5 LINE L1 -2437 3709 3480 3 1086 492 258 205 21 chr1 65697971 65698161 -131497271 + Lx7 LINE L1 7059 7283 -413 3 1086 258 143 0 20 chr1 65698469 65698519 -131496913 - L1MB2 LINE L1 -259 5912 5864 3 1086 236 219 39 52 chr1 65698625 65698702 -131496730 - L1MC LINE L1 -2826 3320 3245 3 1086 244 296 43 27 chr1 65698736 65698920 -131496512 - L1M5 LINE L1 -2956 3190 3004 3 1086 1048 60 0 0 chr1 65698924 65699058 -131496374 + B1_Mm SINE Alu 1 134 -13 3 1086 351 0 0 0 chr1 65699058 65699097 -131496335 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1086 222 37 0 0 chr1 65699414 65699441 -131495991 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1086 180 266 57 92 chr1 65699806 65699947 -131495485 - L3 LINE CR1 -1642 2847 2712 3 1086 326 274 17 35 chr1 65701013 65701128 -131494304 + L1MD LINE L1 2686 2800 -3346 3 1086 368 302 109 45 chr1 65701135 65701291 -131494141 + B3A SINE B2 6 171 -27 3 1086 257 265 92 25 chr1 65702240 65702360 -131493072 - L2a LINE L2 -3 3423 3296 3 1086 447 331 93 86 chr1 65703738 65704039 -131491393 - B4 SINE B4 0 292 2 3 1086 207 0 0 0 chr1 65704129 65704152 -131491280 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1086 406 350 10 0 chr1 65704195 65704295 -131491137 + RSINE1 SINE B4 50 150 -15 3 1086 1462 167 37 27 chr1 65704801 65705096 -131490336 + RLTR15 LTR ERVK 60 357 -2 3 1086 208 319 0 28 chr1 65705098 65705169 -131490263 + CT-rich Low_complexity Low_complexity 5 73 0 3 1086 283 171 0 0 chr1 65705609 65705650 -131489782 - B4A SINE B4 -211 81 41 3 1086 366 80 0 0 chr1 65708515 65708565 -131486867 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1086 23 33 0 0 chr1 65708739 65708769 -131486663 + AT_rich Low_complexity Low_complexity 1 30 0 3 1086 1310 275 109 34 chr1 65708966 65709460 -131485972 - RMER5 LTR ERV1 -3 531 1 3 1086 1620 36 0 0 chr1 65709605 65709801 -131485631 + L1Md_T LINE L1 6387 6582 0 3 1086 1056 163 114 0 chr1 65710162 65710364 -131485068 - URR1B DNA MER1_type 0 225 1 3 1086 867 242 89 19 chr1 65710975 65711033 -131484399 + Lx9 LINE L1 7356 7433 -211 3 1086 300 27 0 0 chr1 65711033 65711070 -131484362 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1086 867 242 89 19 chr1 65711070 65711280 -131484152 + Lx9 LINE L1 7434 7643 -1 3 1086 699 282 82 14 chr1 65711331 65711550 -131483882 - MER67C LTR ERV1 -376 335 102 3 1086 3518 214 75 102 chr1 65711550 65712543 -131482889 - Lx6 LINE L1 -5 7455 6490 3 1086 252 318 28 9 chr1 65712550 65712658 -131482774 - MER67C LTR ERV1 -402 112 3 3 1086 435 242 37 29 chr1 65712798 65712934 -131482498 + RMER30 DNA MER1_type 2 138 -64 3 1086 801 196 0 7 chr1 65712948 65713087 -131482345 - B1_Mur3 SINE Alu -9 140 3 3 1086 2081 116 68 116 chr1 65715246 65715745 -131479687 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1086 345 311 64 105 chr1 65716692 65716911 -131478521 + RMER15 LTR ERVL 357 566 -9 3 1086 495 170 20 0 chr1 65717250 65717350 -131478082 - L1_Mur2 LINE L1 -1946 3931 3830 3 1086 4158 153 58 7 chr1 65717350 65718063 -131477369 + Lx4A LINE L1 6307 7055 -3 3 1086 407 184 20 10 chr1 65718063 65718080 -131477352 - L1_Mur2 LINE L1 -2050 3830 3815 3 1086 461 347 77 51 chr1 65718240 65718591 -131476841 + MLT1A0 LTR MaLR 1 361 -4 3 1086 1108 316 38 36 chr1 65718631 65719182 -131476250 + Lx9 LINE L1 6650 7201 -443 3 1086 1763 229 25 41 chr1 65719254 65719769 -131475663 + MYSERV-int LTR ERVK 5324 5830 -720 3 1086 318 50 0 0 chr1 65719777 65719817 -131475615 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1086 372 43 0 0 chr1 65719817 65719862 -131475570 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1086 857 309 64 21 chr1 65720315 65720596 -131474836 + LTR41B LTR ERVL 13 305 -453 3 1086 262 368 96 26 chr1 65720656 65720812 -131474620 + LTR41B LTR ERVL 401 567 -191 3 1086 308 257 20 10 chr1 65720934 65721036 -131474396 + LTR41B LTR ERVL 634 736 -22 3 1086 1317 274 85 95 chr1 65721240 65721862 -131473570 + RLTR18 LTR ERVK 1 616 0 3 1086 22 56 0 0 chr1 65721889 65721925 -131473507 + AT_rich Low_complexity Low_complexity 1 36 0 3 1086 606 267 72 27 chr1 65722290 65722552 -131472880 - L1MA6 LINE L1 -62 6238 5965 3 1086 351 0 0 0 chr1 65722595 65722634 -131472798 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1086 429 20 0 0 chr1 65722634 65722683 -131472749 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1086 256 308 26 53 chr1 65722701 65722814 -131472618 - RSINE1 SINE B4 -40 125 16 3 1086 419 383 20 0 chr1 65723147 65723296 -131472136 - RSINE1 SINE B4 -10 155 4 3 1086 1052 281 7 4 chr1 65724152 65724423 -131471009 - MTD LTR MaLR -39 380 109 3 1086 207 0 0 0 chr1 65724427 65724450 -131470982 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3 1086 757 216 0 0 chr1 65724450 65724584 -131470848 + B1_Mus2 SINE Alu 2 135 -12 3 1086 362 21 21 0 chr1 65724917 65724964 -131470468 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1086 713 118 23 23 chr1 65724964 65725075 -131470357 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 3 1086 1136 68 0 0 chr1 65725075 65725221 -131470211 + B1_Mus1 SINE Alu 3 148 0 3 1086 713 118 23 23 chr1 65725221 65725282 -131470150 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 3 1086 484 162 11 40 chr1 65725255 65725429 -131470003 + (CAGA)n Simple_repeat Simple_repeat 2 170 0 3 1086 272 186 0 17 chr1 65725430 65725490 -131469942 + GA-rich Low_complexity Low_complexity 2 60 0 3 1086 332 267 134 0 chr1 65726224 65726411 -131469021 + L1MDb LINE L1 1084 1295 -5114 3 1086 727 319 114 25 chr1 65726504 65726976 -131468456 - RMER5 LTR ERV1 0 534 21 3 1086 461 145 35 43 chr1 65727066 65727181 -131468251 + Lx9 LINE L1 7403 7516 -128 3 1086 226 200 22 0 chr1 65727182 65727227 -131468205 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1086 501 209 47 7 chr1 65727239 65727388 -131468044 + Lx9 LINE L1 7487 7641 -3 3 1086 306 269 97 21 chr1 65727405 65727549 -131467883 - L1MDa LINE L1 -4651 1982 1828 3 1086 777 307 95 50 chr1 65727554 65727911 -131467521 + MER67D LTR ERV1 102 474 -40 3 1086 574 0 0 50 chr1 65728284 65728364 -131467068 + (TATAG)n Simple_repeat Simple_repeat 1 76 0 3 1086 385 162 15 0 chr1 65728460 65728525 -131466907 - MTD LTR MaLR 0 419 354 3 1086 1677 106 12 12 chr1 65728525 65728782 -131466650 - RLTR9A2 LTR ERVK 0 383 127 3 1086 239 191 0 0 chr1 65728776 65728818 -131466614 - MTD LTR MaLR -379 42 1 3 1086 207 0 0 0 chr1 65729943 65729966 -131465466 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1086 607 152 0 10 chr1 65731110 65731210 -131464222 + BGLII_Mus LTR ERVK 1 99 -323 3 1086 401 303 73 11 chr1 65731300 65731477 -131463955 + L1MDa LINE L1 1839 2026 -4607 3 1086 1077 70 12 43 chr1 65731701 65731864 -131463568 - L1_Mus1 LINE L1 -1 6566 6409 3 1086 1574 158 58 6 chr1 65731871 65732184 -131463248 + BGLII_Mus LTR ERVK 84 412 -10 3 1086 182 65 65 0 chr1 65732779 65732810 -131462622 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 3 1086 284 326 90 16 chr1 65735240 65735552 -131459880 + Lx9 LINE L1 7279 7613 -31 3 1086 837 185 26 0 chr1 65735661 65735812 -131459620 + URR1B DNA MER1_type 2 156 -69 3 1086 375 268 38 32 chr1 65735986 65736144 -131459288 - RMER17C-int LTR ERVK -2138 1100 942 3 1086 1786 219 128 87 chr1 65736121 65736832 -131458600 - RMER17C-int LTR ERVK -2498 740 1 3 1086 1348 168 4 239 chr1 65736832 65737364 -131458068 - RMER17C LTR ERVK -3 407 1 3 1086 1537 244 51 26 chr1 65737537 65737928 -131457504 - Lx6 LINE L1 -1016 6444 6044 3 1086 1206 55 0 0 chr1 65738008 65738154 -131457278 - B1_Mm SINE Alu 0 147 2 3 1086 444 19 0 0 chr1 65738162 65738215 -131457217 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1086 1767 129 17 0 chr1 65739327 65739621 -131455811 - L1_Mur2 LINE L1 -1382 4495 4197 3 1086 8063 155 20 8 chr1 65739620 65740203 -131455229 + Lx LINE L1 4453 5037 -846 3 1086 3401 31 3 0 chr1 65740203 65740594 -131454838 + MTA_Mm LTR MaLR 5 396 0 3 1086 8063 155 20 8 chr1 65740594 65741019 -131454413 + Lx LINE L1 5038 5485 -398 3 1086 1299 196 98 33 chr1 65741019 65741356 -131454076 + RLTR10D LTR ERVK 1 359 0 3 1086 8063 95 3 8 chr1 65741356 65742524 -131452908 + Lx LINE L1 5486 6639 -15 3 1086 811 269 57 0 chr1 65743699 65743926 -131451506 + Lx5 LINE L1 6807 7046 -4 3 1086 270 265 192 32 chr1 65743944 65744100 -131451332 - CYRA11_Mm Unknown Y-chromosome -398 219 39 3 1086 563 318 56 102 chr1 65744265 65744541 -131450891 + B4 SINE B4 2 270 -22 3 1086 261 0 0 0 chr1 65744541 65744570 -131450862 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1086 563 318 56 102 chr1 65744570 65744598 -131450834 + B4 SINE B4 271 292 0 3 1086 21 36 0 0 chr1 65745237 65745265 -131450167 + AT_rich Low_complexity Low_complexity 1 28 0 3 1086 7203 54 1 4 chr1 65745378 65746289 -131449143 + L1Md_F2 LINE L1 5675 6582 0 3 1086 1364 208 50 203 chr1 65746660 65747203 -131448229 - RLTR18B LTR ERVK -52 460 1 3 1086 229 336 62 49 chr1 65747247 65747391 -131448041 + L2 LINE L2 2169 2314 -1105 3 1086 446 340 81 64 chr1 65747622 65747917 -131447515 - MLT1A1 LTR MaLR -38 370 71 3 1086 2959 40 0 0 chr1 65747961 65748314 -131447118 - L1Md_F2 LINE L1 -14 6568 6216 3 1086 5842 42 4 0 chr1 65749189 65749896 -131445536 + L1Md_F2 LINE L1 5871 6580 -2 3 1086 24 0 0 0 chr1 65749996 65750020 -131445412 + AT_rich Low_complexity Low_complexity 1 24 0 3 1086 534 292 44 106 chr1 65751035 65751261 -131444171 - B3A SINE B2 0 216 5 3 1086 5687 181 135 62 chr1 65752013 65753369 -131442063 + L1_Mur2 LINE L1 647 2049 -3828 3 1086 363 44 0 0 chr1 65753369 65753414 -131442018 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1086 5687 155 181 90 chr1 65753414 65753588 -131441844 + L1_Mur2 LINE L1 2050 2213 -3664 3 1086 1173 113 0 41 chr1 65753588 65753782 -131441650 + B2_Mm2 SINE B2 3 188 -7 3 1086 1046 70 7 0 chr1 65753789 65753931 -131441501 + B1_Mus1 SINE Alu 6 148 0 3 1086 5687 155 181 90 chr1 65753931 65754698 -131440734 + L1_Mur2 LINE L1 2223 3296 -2581 3 1086 2787 82 80 20 chr1 65754698 65755146 -131440286 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1086 4083 79 33 37 chr1 65755148 65755862 -131439570 + IAPEz-int LTR ERVK 3 662 -5819 3 1086 2220 68 0 0 chr1 65755862 65756140 -131439292 + IAPEz-int LTR ERVK 1359 1636 -4845 3 1086 6163 33 4 12 chr1 65756139 65756884 -131438548 + IAPEz-int LTR ERVK 5736 6474 -7 3 1086 2595 151 71 6 chr1 65756884 65757376 -131438056 + L1_Mur2 LINE L1 3287 3810 -2067 3 1086 30375 105 41 34 chr1 65757372 65760207 -131435225 + Lx3A LINE L1 205 3479 -2407 3 1086 180 0 0 0 chr1 65760207 65760227 -131435205 + (CAA)n Simple_repeat Simple_repeat 1 20 0 3 1086 30375 97 12 42 chr1 65760227 65761379 -131434053 + Lx3A LINE L1 3480 4637 -1249 3 1086 390 42 0 0 chr1 65761379 65761427 -131434005 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1086 30375 97 12 42 chr1 65761427 65761599 -131433833 + Lx3A LINE L1 4638 4679 -1207 3 1086 1645 30 35 0 chr1 65761599 65761802 -131433630 + L1Md_F3 LINE L1 6362 6571 -13 3 1086 30375 114 26 29 chr1 65761802 65764085 -131431347 + Lx3A LINE L1 4680 6973 -8 3 1086 372 196 30 11 chr1 65764099 65764200 -131431232 + Lx5 LINE L1 3808 3903 -1974 4 1086 2241 69 0 0 chr1 65764192 65764469 -131430963 - L1_Mus2 LINE L1 -325 6241 5965 4 1086 207 0 0 0 chr1 65764507 65764530 -131430902 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1086 6786 154 55 8 chr1 65764531 65764819 -131430613 + Lx5 LINE L1 3899 4198 -1679 4 1086 336 24 0 0 chr1 65764819 65764860 -131430572 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1086 6786 154 55 8 chr1 65764860 65765872 -131429560 + Lx5 LINE L1 4199 5258 -619 4 1086 204 40 0 0 chr1 65765905 65765930 -131429502 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1086 406 243 19 32 chr1 65765978 65766135 -131429297 + (TATG)n Simple_repeat Simple_repeat 4 158 0 4 1086 566 233 0 6 chr1 65766148 65766329 -131429103 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1086 1522 184 60 19 chr1 65766413 65766728 -131428704 + RMER19C LTR ERVK 268 595 -16 4 1086 438 20 0 0 chr1 65766729 65766780 -131428652 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1086 3841 220 67 8 chr1 65766781 65768163 -131427269 + Lx5 LINE L1 5252 6730 -328 4 1086 499 261 77 7 chr1 65768163 65768306 -131427126 - RMER13B LTR ERVK 0 908 756 4 1086 2438 139 9 38 chr1 65768303 65768729 -131426703 - RMER13B LTR ERVK -492 416 3 4 1086 1647 220 3 6 chr1 65768729 65769067 -131426365 + Lx5 LINE L1 6706 7042 -8 4 1086 207 0 0 0 chr1 65769173 65769196 -131426236 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1086 3069 83 2 9 chr1 65769624 65770048 -131425384 + BGLII LTR ERVK 1 421 0 4 1086 270 173 0 39 chr1 65770087 65770165 -131425267 + G-rich Low_complexity Low_complexity 3 77 0 4 1086 441 80 34 11 chr1 65770380 65770468 -131424964 + (TTTTG)n Simple_repeat Simple_repeat 2 91 0 4 1086 249 231 19 0 chr1 65771185 65771237 -131424195 + RMER15 LTR ERVL 1 53 -522 4 1086 344 307 125 27 chr1 65771247 65771259 -131424173 + CYRA11_Mm Unknown Y-chromosome 160 191 -426 4 1086 804 166 7 0 chr1 65771259 65771398 -131424034 - URR1B DNA MER1_type 0 225 86 4 1086 344 307 125 27 chr1 65771398 65771471 -131423961 + CYRA11_Mm Unknown Y-chromosome 192 405 -212 4 1086 1288 245 148 14 chr1 65771468 65771906 -131423526 + RMER15 LTR ERVL 30 526 -49 4 1086 457 332 111 49 chr1 65771928 65772298 -131423134 + MT2A LTR ERVL 1 393 -140 4 1086 351 339 62 16 chr1 65772635 65772764 -131422668 + MIR3 SINE MIR 72 206 -2 4 1086 431 271 111 24 chr1 65772803 65773011 -131422421 - L1M3 LINE L1 -3582 2558 2333 4 1086 456 35 0 0 chr1 65773631 65773689 -131421743 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1086 397 355 86 50 chr1 65774000 65774488 -131420944 + MLT1G1 LTR MaLR 62 521 -70 4 1086 384 293 154 42 chr1 65774507 65774838 -131420594 - RLTR9A LTR ERVK 0 368 1 4 1086 520 223 83 15 chr1 65774944 65775076 -131420356 + B1_Mus2 SINE Alu 1 141 -6 4 1086 315 0 0 0 chr1 65775209 65775244 -131420188 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1086 225 360 16 95 chr1 65775275 65775465 -131419967 + MLT1G1-int LTR MaLR 369 543 -946 4 1086 526 260 25 55 chr1 65775514 65775677 -131419755 + RSINE1 SINE B4 8 165 0 4 1086 1984 260 101 22 chr1 65775697 65776495 -131418937 - Lx9 LINE L1 0 7644 6784 4 1086 339 65 0 0 chr1 65777320 65777366 -131418066 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1086 366 23 0 0 chr1 65777366 65777408 -131418024 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 4 1086 381 402 87 57 chr1 65777427 65777897 -131417535 + MLT1G1 LTR MaLR 106 589 -6 4 1086 1159 62 7 0 chr1 65778163 65778309 -131417123 - B1_Mm SINE Alu 0 147 1 4 1086 238 170 38 0 chr1 65779149 65779202 -131416230 + A-rich Low_complexity Low_complexity 2 56 0 4 1086 2965 58 3 8 chr1 65779452 65779833 -131415599 - L1_Mus1 LINE L1 0 6567 6189 4 1086 242 290 57 82 chr1 65780416 65780574 -131414858 - MTE2a LTR MaLR -24 355 202 4 1086 342 240 47 0 chr1 65781080 65781251 -131414181 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1086 7713 90 27 8 chr1 65781759 65782886 -131412546 + Lx3_Mus LINE L1 5853 7000 -9 4 1086 450 0 0 0 chr1 65782904 65782954 -131412478 + (GAA)n Simple_repeat Simple_repeat 2 51 0 4 1086 183 292 108 27 chr1 65783124 65783198 -131412234 + MIRm SINE MIR 99 178 -98 4 1086 945 0 0 0 chr1 65783620 65783725 -131411707 + (TTC)n Simple_repeat Simple_repeat 2 106 0 4 1086 1008 106 7 0 chr1 65783727 65783868 -131411564 - B1_Mus2 SINE Alu -4 143 2 4 1086 26 0 0 0 chr1 65784522 65784548 -131410884 + AT_rich Low_complexity Low_complexity 1 26 0 4 1086 35 0 0 0 chr1 65784622 65784657 -131410775 + AT_rich Low_complexity Low_complexity 1 35 0 4 1086 671 289 48 48 chr1 65785552 65785821 -131409611 + MLT1A1 LTR MaLR 131 399 -9 4 1086 7449 52 0 5 chr1 65785821 65786756 -131408676 + L1Md_F2 LINE L1 5651 6580 -2 4 1086 690 370 65 42 chr1 65787755 65788229 -131407203 + MER90a LTR ERV1 130 614 0 4 1086 531 47 128 0 chr1 65788901 65788987 -131406445 - L1Md_F2 LINE L1 -3 6579 6483 4 1086 24345 69 2 2 chr1 65788988 65792209 -131403223 - L1_Mm LINE L1 -314 5569 2348 4 1086 2929 181 50 21 chr1 65792211 65792774 -131402658 - ETnERV2-int LTR ERVK -6806 600 22 4 1086 399 171 0 0 chr1 65792774 65792850 -131402582 + A-rich Low_complexity Low_complexity 1 76 0 4 1086 7125 95 23 8 chr1 65792888 65793906 -131401526 - RLTR13D4 LTR ERVK 0 1033 1 4 1086 1167 167 76 0 chr1 65794072 65794233 -131401199 - URR1A DNA MER1_type 0 226 65 4 1086 2242 164 54 106 chr1 65794233 65794451 -131400981 - RLTR31_Mm LTR ERVK 0 561 340 4 1086 991 150 0 0 chr1 65794451 65794598 -131400834 + B1_Mus1 SINE Alu 2 148 0 4 1086 2242 164 54 106 chr1 65794598 65794971 -131400461 - RLTR31_Mm LTR ERVK -222 339 1 4 1086 1167 167 76 0 chr1 65794971 65795019 -131400413 - URR1A DNA MER1_type -162 64 2 4 135 37890 14 0 7 chr1 65795599 65800787 -131394645 + L1Md_A LINE L1 440 5586 -297 4 1087 8763 17 0 0 chr1 65800787 65801783 -131393649 + L1Md_A LINE L1 5587 6582 0 4 1087 406 290 40 74 chr1 65803210 65803359 -131392073 + B1F1 SINE Alu 2 145 -4 4 1087 444 19 0 0 chr1 65803589 65803642 -131391790 + (CCAA)n Simple_repeat Simple_repeat 4 56 0 4 1087 1312 207 52 48 chr1 65803713 65804043 -131391389 + Lx4B LINE L1 6710 7040 -18 4 1087 459 0 0 0 chr1 65804043 65804094 -131391338 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1087 3446 211 194 16 chr1 65804353 65805294 -131390138 - RMER1A Other Other -29 1001 4 4 1087 2075 115 72 0 chr1 65806401 65806706 -131388726 + ORR1A2 LTR MaLR 1 327 0 4 1087 22 0 0 0 chr1 65807269 65807291 -131388141 + AT_rich Low_complexity Low_complexity 1 22 0 4 1087 277 249 13 23 chr1 65807565 65807694 -131387738 + L1_Rod LINE L1 2273 2404 -3476 4 1087 21 71 0 0 chr1 65808405 65808447 -131386985 + AT_rich Low_complexity Low_complexity 1 42 0 4 1087 203 188 0 20 chr1 65808456 65808505 -131386927 + (TATG)n Simple_repeat Simple_repeat 4 51 0 4 1087 606 49 0 0 chr1 65808544 65808626 -131386806 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1087 306 301 95 113 chr1 65808662 65808738 -131386694 - B4 SINE B4 -22 270 191 4 1087 1199 224 146 24 chr1 65808738 65809068 -131386364 - ORR1D2 LTR MaLR 0 370 1 4 1087 306 301 95 113 chr1 65809068 65809212 -131386220 - B4 SINE B4 -102 190 54 4 1087 423 152 0 0 chr1 65810483 65810562 -131384870 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1087 408 135 51 59 chr1 65810673 65810791 -131384641 - Lx9 LINE L1 -1 7643 7527 4 1087 414 0 0 0 chr1 65810794 65810840 -131384592 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1087 670 164 150 0 chr1 65810841 65810981 -131384451 - Lx9 LINE L1 -169 7475 7315 4 1087 22 0 0 0 chr1 65810981 65811003 -131384429 + AT_rich Low_complexity Low_complexity 1 22 0 4 1087 338 0 24 0 chr1 65811698 65811740 -131383692 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1087 24 0 0 0 chr1 65811922 65811946 -131383486 + AT_rich Low_complexity Low_complexity 1 24 0 4 1087 225 310 99 44 chr1 65811947 65812038 -131383394 - B3 SINE B2 -119 97 2 4 1087 7873 95 13 27 chr1 65812144 65814038 -131381394 - L1VL4 LINE L1 -1512 2047 187 4 1087 2961 77 10 0 chr1 65814718 65815108 -131380324 + MTA_Mm LTR MaLR 3 396 0 4 1087 324 309 101 57 chr1 65815328 65815486 -131379946 + RLTR9E LTR ERVK 239 403 -6 4 1087 365 359 19 13 chr1 65816217 65816372 -131379060 + RSINE1 SINE B4 4 159 -6 4 1087 929 278 120 10 chr1 65816902 65817348 -131378084 - Lx7 LINE L1 -800 6896 6246 4 1087 406 149 92 0 chr1 65817346 65817433 -131377999 - L1_Mur3 LINE L1 -3237 2643 2549 4 1087 678 275 24 9 chr1 65817430 65817643 -131377789 + L1_Mur3 LINE L1 940 1155 -6573 4 1087 1124 155 0 5 chr1 65817638 65817832 -131377600 + L1_Mm LINE L1 5301 5493 -390 4 1087 286 42 20 20 chr1 65818074 65818123 -131377309 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1087 4197 158 48 9 chr1 65818185 65818930 -131376502 + Lx2 LINE L1 5992 6765 -232 4 1087 431 158 50 8 chr1 65818930 65819051 -131376381 + Lx2A1 LINE L1 6882 7007 -1 4 1087 1176 179 29 29 chr1 65819082 65819250 -131376182 + L1_Mur3 LINE L1 1154 1328 -5758 4 1087 2086 236 15 87 chr1 65819250 65819908 -131375524 + RMER19C LTR ERVK 1 611 0 4 1087 1176 172 27 27 chr1 65819908 65820047 -131375385 + L1_Mur3 LINE L1 1329 1466 -4411 4 1087 260 256 0 12 chr1 65820058 65820141 -131375291 + L1_Mur3 LINE L1 2062 2143 -3734 4 1087 272 254 16 0 chr1 65820532 65820595 -131374837 + ID4_ SINE ID 14 77 -6 4 1087 218 321 25 0 chr1 65820595 65820613 -131374819 + ID_B1 SINE B4 14 96 -128 4 1087 327 343 27 45 chr1 65820960 65821070 -131374362 + B3A SINE B2 91 198 0 4 1087 338 20 61 0 chr1 65822119 65822168 -131373264 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 4 1087 5861 66 36 16 chr1 65822801 65823605 -131371827 + L1_Mus2 LINE L1 5744 6563 -3 4 1087 1054 265 113 45 chr1 65823763 65824142 -131371290 + MTD LTR MaLR 1 405 -14 4 1087 1096 152 11 6 chr1 65824306 65824485 -131370947 + B2_Mm2 SINE B2 2 181 -14 4 1087 275 247 137 20 chr1 65825589 65825742 -131369690 - L1M5 LINE L1 -2539 3607 3437 4 1087 225 174 43 0 chr1 65826013 65826059 -131369373 + (TATG)n Simple_repeat Simple_repeat 3 50 0 4 1087 426 333 118 0 chr1 65826059 65826203 -131369229 - RSINE1 SINE B4 0 165 5 4 1087 22765 153 11 60 chr1 65826430 65832018 -131363414 + L1Md_F LINE L1 281 5589 -297 4 1087 8360 32 3 0 chr1 65832018 65833011 -131362421 + L1Md_T LINE L1 5587 6582 0 4 1087 21 0 0 0 chr1 65836200 65836221 -131359211 + AT_rich Low_complexity Low_complexity 1 21 0 4 1087 1807 204 60 40 chr1 65836390 65836789 -131358643 + MTD LTR MaLR 13 419 0 4 1087 664 320 40 0 chr1 65836795 65836995 -131358437 - B4A SINE B4 -84 208 1 4 1087 262 242 0 0 chr1 65836998 65837064 -131358368 - L1M4b LINE L1 -3857 3477 3412 5 1087 180 0 0 0 chr1 65837123 65837143 -131358289 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1087 32 103 0 0 chr1 65837185 65837301 -131358131 + AT_rich Low_complexity Low_complexity 1 116 0 5 1087 337 332 64 39 chr1 65837711 65837915 -131357517 - L1M4b LINE L1 -5150 2184 1976 5 1087 870 306 126 37 chr1 65838563 65839070 -131356362 - L1MA6 LINE L1 -101 6199 5642 5 1087 1791 184 55 22 chr1 65839070 65839436 -131355996 + ORR1C1 LTR MaLR 1 378 0 5 1087 870 306 126 37 chr1 65839436 65839501 -131355931 - L1MA6 LINE L1 -659 5641 5576 5 1087 4245 101 2 3 chr1 65839673 65840279 -131355153 - L1_Mus4 LINE L1 -3 6633 6029 5 1087 1914 150 74 13 chr1 65840279 65840670 -131354762 + RLTR9F LTR ERVK 1 415 0 5 1087 6390 250 18 14 chr1 65840672 65842377 -131353055 + ETnERV-int LTR ERVK 3 1656 -1658 5 1087 1703 50 13 9 chr1 65842383 65842607 -131352825 + L1Md_F2 LINE L1 6357 6581 -1 5 1087 4701 74 2 3 chr1 65842609 65843219 -131352213 + L1_Mus1 LINE L1 5959 6567 0 5 1087 1582 289 75 36 chr1 65843288 65844044 -131351388 + ETnERV-int LTR ERVK 1704 2489 -3678 5 1087 9366 118 4 1 chr1 65844103 65845392 -131350040 - L1_Mus4 LINE L1 -606 6030 4735 5 1087 330 36 54 0 chr1 65845392 65845448 -131349984 + (TTG)n Simple_repeat Simple_repeat 2 60 0 5 1087 9366 143 6 1 chr1 65845448 65845818 -131349614 - L1_Mus4 LINE L1 -1149 4734 4363 5 1087 1367 321 24 42 chr1 65846314 65846497 -131348935 - Lx8 LINE L1 -331 7142 6967 5 1087 396 277 173 43 chr1 65846497 65846821 -131348611 - RLTR9A LTR ERVK -2 366 1 5 1087 1367 321 24 42 chr1 65846821 65847212 -131348220 - Lx8 LINE L1 -507 6966 6578 5 1087 368 259 133 9 chr1 65847230 65847314 -131348118 - Lx8 LINE L1 -996 6477 6383 5 1087 222 37 0 0 chr1 65847314 65847341 -131348091 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1087 368 259 133 9 chr1 65847341 65847369 -131348063 - Lx8 LINE L1 -1091 6382 6351 5 1087 183 42 0 0 chr1 65847623 65847647 -131347785 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1087 13476 158 21 6 chr1 65847983 65850490 -131344942 - L1_Mur1 LINE L1 -1444 4442 1897 5 1087 411 113 0 0 chr1 65850523 65850585 -131344847 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1087 303 218 165 43 chr1 65850592 65850707 -131344725 - Lx9 LINE L1 -206 7438 7310 5 1087 353 286 73 22 chr1 65851141 65851277 -131344155 - L1M4b LINE L1 -7099 235 93 5 1087 687 242 137 53 chr1 65851490 65851897 -131343535 + ORR1D1 LTR MaLR 1 380 -14 5 1087 707 245 49 0 chr1 65851895 65852058 -131343374 + MTE2a LTR MaLR 209 379 0 5 1087 23 33 0 0 chr1 65853008 65853038 -131342394 + AT_rich Low_complexity Low_complexity 1 30 0 5 1087 263 85 21 0 chr1 65853121 65853168 -131342264 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 1087 675 0 0 0 chr1 65853845 65853920 -131341512 + (TTTTA)n Simple_repeat Simple_repeat 2 76 0 5 1087 1204 42 0 0 chr1 65853921 65854064 -131341368 - B1_Mus2 SINE Alu -4 143 1 5 1087 1175 315 59 24 chr1 65854307 65854802 -131340630 + Lx8 LINE L1 6813 7324 -149 5 1087 360 0 0 0 chr1 65854805 65854845 -131340587 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1087 21 36 0 0 chr1 65854851 65854879 -131340553 + AT_rich Low_complexity Low_complexity 1 28 0 5 1087 414 0 0 0 chr1 65854881 65854927 -131340505 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1087 9269 83 31 20 chr1 65855079 65855255 -131340177 + Lx3_Mus LINE L1 5618 5787 -1222 5 1087 5093 101 196 4 chr1 65855255 65856057 -131339375 + RMER17B LTR ERVK 3 958 0 5 1087 9269 83 31 20 chr1 65856057 65856182 -131339250 + Lx3_Mus LINE L1 5788 5910 -1099 5 1087 186 43 0 0 chr1 65856182 65856205 -131339227 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1087 9269 83 31 20 chr1 65856205 65857279 -131338153 + Lx3_Mus LINE L1 5911 7007 -2 5 1087 180 179 0 0 chr1 65857283 65857322 -131338110 + A-rich Low_complexity Low_complexity 1 39 0 5 1087 390 42 0 0 chr1 65857709 65857757 -131337675 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1087 29 0 0 0 chr1 65858787 65858816 -131336616 + AT_rich Low_complexity Low_complexity 1 29 0 5 1087 24 0 0 0 chr1 65859092 65859116 -131336316 + AT_rich Low_complexity Low_complexity 1 24 0 5 1087 450 127 0 0 chr1 65859583 65859654 -131335778 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1087 416 276 9 19 chr1 65859831 65859938 -131335494 - B3 SINE B2 -110 106 1 5 1087 6000 164 38 19 chr1 65860108 65861037 -131334395 + Lx3C LINE L1 5688 6652 -324 5 1087 2981 83 5 5 chr1 65861037 65861458 -131333974 + BGLII LTR ERVK 1 421 0 5 1087 6000 164 38 19 chr1 65861458 65861633 -131333799 + Lx3C LINE L1 6653 6822 -154 5 1087 2314 102 74 25 chr1 65861633 65862025 -131333407 + IAPLTR2a LTR ERVK 1 411 0 5 1087 6000 164 38 19 chr1 65862025 65862066 -131333366 + Lx3C LINE L1 6823 6854 -122 5 1087 1005 86 0 73 chr1 65862082 65862233 -131333199 + IAPEz-int LTR ERVK 54 193 -6288 5 1087 228 345 0 0 chr1 65862233 65862288 -131333144 + RLTR27 LTR ERVK 221 275 -34 5 1087 3468 52 25 16 chr1 65862288 65862854 -131332578 + IAPEz-int LTR ERVK 168 662 -5819 5 1087 2195 62 7 0 chr1 65862854 65863130 -131332302 + IAPEz-int LTR ERVK 1359 1636 -4845 5 1087 6160 32 3 19 chr1 65863129 65863885 -131331547 + IAPEz-int LTR ERVK 5736 6479 -2 5 1087 2379 92 77 26 chr1 65863887 65864278 -131331154 + IAPLTR2a LTR ERVK 1 411 0 5 1087 192 77 0 0 chr1 65864349 65864375 -131331057 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1087 32 0 0 0 chr1 65864378 65864410 -131331022 + AT_rich Low_complexity Low_complexity 1 32 0 5 1087 590 400 34 8 chr1 65864410 65864788 -131330644 - LTR82B Low_complexity ERVL -309 521 134 5 1087 3099 99 123 4 chr1 65865055 65865552 -131329880 + RLTR1D LTR ERV1 1 556 -49 5 1087 252 260 45 99 chr1 65866235 65866261 -131329171 + LTR48B LTR ERV1 3 30 -614 5 1087 216 67 0 0 chr1 65866261 65866291 -131329141 + (CTG)n Simple_repeat Simple_repeat 1 30 0 5 1087 252 280 75 89 chr1 65866291 65866436 -131328996 + LTR48B LTR ERV1 31 181 -441 5 1087 286 322 119 84 chr1 65866479 65866764 -131328668 - ORR1E LTR MaLR -43 316 22 5 1087 245 320 121 94 chr1 65866786 65867093 -131328339 + LTR48B LTR ERV1 209 523 -121 5 1087 2322 86 12 179 chr1 65867139 65867632 -131327800 - RLTR9F LTR ERVK -4 411 1 5 1087 319 325 81 113 chr1 65867634 65868005 -131327427 - ORR1E LTR MaLR 0 359 1 5 1087 444 104 0 0 chr1 65868044 65868111 -131327321 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1087 1757 175 77 12 chr1 65868815 65869151 -131326281 + Lx5 LINE L1 6693 7050 0 5 1087 1414 42 0 11 chr1 65869151 65869412 -131326020 + (GGGAA)n Simple_repeat Simple_repeat 1 257 0 5 1087 989 149 6 0 chr1 65869412 65869587 -131325845 + GA-rich Low_complexity Low_complexity 1 176 0 5 1087 854 338 96 13 chr1 65869905 65870350 -131325082 - MLT1D LTR MaLR -4 501 28 5 1087 432 0 0 0 chr1 65870489 65870537 -131324895 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1087 667 294 9 53 chr1 65870665 65870891 -131324541 + B3 SINE B2 1 216 0 5 1087 371 277 42 59 chr1 65873581 65873700 -131321732 - PB1D10 SINE Alu 0 117 1 5 1087 385 309 16 27 chr1 65873602 65873710 -131321722 - ID_B1 SINE B4 -40 184 79 5 1087 427 275 217 57 chr1 65873710 65874025 -131321407 - MLT1A0 LTR MaLR 0 390 1 5 1087 752 174 26 77 chr1 65874190 65874346 -131321086 + B1_Mus1 SINE Alu 1 148 0 5 1087 309 196 130 188 chr1 65875439 65875573 -131319859 + Lx7 LINE L1 7320 7428 -268 5 1087 3432 45 33 2 chr1 65875573 65875996 -131319436 - RLTR10C LTR ERVK 0 436 1 5 1087 309 196 130 188 chr1 65875996 65876100 -131319332 + Lx7 LINE L1 7429 7512 -184 5 1087 309 109 0 0 chr1 65876100 65876146 -131319286 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 1087 309 196 130 188 chr1 65876146 65876218 -131319214 + Lx7 LINE L1 7513 7615 -81 5 1087 1258 93 16 11 chr1 65876218 65876403 -131319029 + B2_Mm2 SINE B2 2 187 -8 5 1087 309 196 130 188 chr1 65876403 65876467 -131318965 + Lx7 LINE L1 7616 7673 -23 5 1087 309 51 0 0 chr1 65876467 65876506 -131318926 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1087 258 32 0 0 chr1 65876499 65876530 -131318902 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1087 180 0 0 0 chr1 65877002 65877022 -131318410 + (TAA)n Simple_repeat Simple_repeat 1 20 0 5 1087 285 29 0 0 chr1 65878511 65878545 -131316887 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1087 264 30 0 0 chr1 65878559 65878592 -131316840 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1087 1665 313 46 177 chr1 65878785 65879739 -131315693 - MTE-int LTR MaLR -555 1025 197 5 1087 519 254 21 21 chr1 65879749 65879890 -131315542 + Lx8 LINE L1 6773 6913 -560 5 1087 805 266 48 0 chr1 65879933 65880162 -131315270 - Lx8 LINE L1 -452 7021 6782 5 1087 2161 77 10 3 chr1 65880804 65881105 -131314327 + L1_Mus3 LINE L1 6333 6635 -3 5 1087 21 0 0 0 chr1 65882214 65882235 -131313197 + AT_rich Low_complexity Low_complexity 1 21 0 5 1087 1742 267 44 31 chr1 65882419 65882941 -131312491 - RMER19C LTR ERVK 0 611 83 5 1087 2949 66 0 0 chr1 65883508 65883889 -131311543 - L1Md_T LINE L1 0 6582 6202 5 1087 1181 312 87 16 chr1 65883952 65884437 -131310995 + Lx8 LINE L1 6191 6709 -764 5 1087 275 342 43 26 chr1 65885653 65885770 -131309662 + MIRb SINE MIR 69 187 -81 5 1087 21 57 0 0 chr1 65885989 65886024 -131309408 + AT_rich Low_complexity Low_complexity 1 35 0 5 1087 317 176 14 0 chr1 65886841 65886915 -131308517 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1087 716 265 131 65 chr1 65886923 65887351 -131308081 - Lx8 LINE L1 -1284 6189 5734 5 1087 187 412 0 19 chr1 65888636 65888740 -131306692 + MER5B DNA MER1_type 13 114 -64 5 1087 7951 35 20 8 chr1 65889005 65890154 -131305278 - L1Md_F2 LINE L1 0 6582 5420 5 1087 215 356 25 17 chr1 65890172 65890292 -131305140 + MIR SINE MIR 124 244 -18 5 1087 1051 292 27 17 chr1 65890657 65890957 -131304475 + MER82 DNA MER2_type 28 330 -323 5 1087 21 82 0 0 chr1 65891261 65891310 -131304122 + AT_rich Low_complexity Low_complexity 1 49 0 5 1087 246 412 70 51 chr1 65892718 65893073 -131302359 + MLT1J LTR MaLR 102 463 -49 5 1087 236 209 21 21 chr1 65893161 65893254 -131302178 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1087 468 0 0 0 chr1 65893353 65893405 -131302027 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1087 2081 149 14 8 chr1 65893411 65893777 -131301655 + RLTR9A LTR ERVK 1 368 0 5 1087 3330 138 40 6 chr1 65894801 65895333 -131300099 - Lx4A LINE L1 -57 7001 6452 5 1087 1056 124 28 45 chr1 65895334 65895511 -131299921 + LSU-rRNA_Hsa rRNA rRNA 4277 4450 -585 5 1087 506 308 176 8 chr1 65895648 65895993 -131299439 + RMER15 LTR ERVL 70 575 0 5 1087 420 294 49 25 chr1 65896180 65896302 -131299130 + B1F SINE Alu 13 137 -12 5 1087 201 39 0 0 chr1 65896302 65896328 -131299104 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1087 29 28 0 0 chr1 65896339 65896375 -131299057 + AT_rich Low_complexity Low_complexity 1 36 0 5 1087 477 147 0 0 chr1 65896483 65896592 -131298840 + (TG)n Simple_repeat Simple_repeat 1 109 0 5 1087 238 235 30 1 chr1 65896635 65896685 -131298747 - PB1D10 SINE Alu -59 90 31 6 1087 2655 142 35 7 chr1 65896685 65897147 -131298285 + Lx2 LINE L1 6521 6995 -2 6 1087 219 257 160 13 chr1 65897147 65897171 -131298261 - B1F1 SINE Alu -119 30 5 6 1087 25 31 0 0 chr1 65897177 65897209 -131298223 + AT_rich Low_complexity Low_complexity 1 32 0 6 1087 603 269 7 0 chr1 65897876 65898017 -131297415 - ID_B1 SINE B4 0 224 83 6 1087 181 351 0 17 chr1 65898279 65898337 -131297095 - MER5A DNA MER1_type -74 115 59 6 1087 208 0 0 59 chr1 65899186 65899220 -131296212 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1087 237 302 177 0 chr1 65899459 65899555 -131295877 - MER82 DNA MER2_type -22 631 519 6 1087 345 24 0 0 chr1 65899838 65899880 -131295552 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1087 573 349 86 30 chr1 65899903 65900204 -131295228 - MER82 DNA MER2_type -335 318 1 6 1087 713 239 42 28 chr1 65900267 65900482 -131294950 - RLTR45 LTR ERVK 0 482 265 6 1087 695 202 226 80 chr1 65901022 65901296 -131294136 - Lx5 LINE L1 -1 7049 6736 6 1087 2566 143 130 16 chr1 65901298 65901867 -131293565 - L1_Mur3 LINE L1 -2542 3335 2702 6 1087 3398 196 19 77 chr1 65901835 65902938 -131292494 - L1_Mur3 LINE L1 -3911 1966 859 6 1087 7082 111 18 14 chr1 65903490 65903606 -131291826 - Lx LINE L1 -1 6653 6538 6 1087 207 0 0 0 chr1 65903606 65903629 -131291803 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 6 1087 7082 128 22 10 chr1 65903629 65905050 -131290382 - Lx LINE L1 -117 6537 5084 6 1087 1047 109 0 0 chr1 65905053 65905209 -131290223 + (TTCC)n Simple_repeat Simple_repeat 4 159 0 6 1087 22 35 0 0 chr1 65906301 65906330 -131289102 + AT_rich Low_complexity Low_complexity 1 29 0 6 1087 25 31 0 0 chr1 65907022 65907054 -131288378 + AT_rich Low_complexity Low_complexity 1 32 0 6 1087 376 353 51 17 chr1 65907367 65907543 -131287889 - LTR16B LTR ERVL -14 449 268 6 1087 6196 210 44 21 chr1 65907890 65909074 -131286358 - Lx3C LINE L1 -2 6974 5754 6 1087 1316 125 5 0 chr1 65909074 65909266 -131286166 - B2_Mm2 SINE B2 -2 193 1 6 1087 6196 168 6 22 chr1 65909266 65909669 -131285763 - Lx3C LINE L1 -1223 5753 5350 6 1087 351 0 0 0 chr1 65909671 65909710 -131285722 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1087 532 299 51 0 chr1 65910243 65910420 -131285012 + Lx8 LINE L1 6081 6266 -1207 6 1087 440 268 29 7 chr1 65910421 65910560 -131284872 + RMER6-int LTR ERVK 2737 2878 -299 6 1087 495 157 0 0 chr1 65910588 65910677 -131284755 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1087 647 259 75 78 chr1 65910694 65911054 -131284378 + MYSERV16_I-int LTR ERVK 219 577 -1749 6 1087 984 95 0 28 chr1 65911173 65911314 -131284118 + B1_Mus1 SINE Alu 3 139 -9 6 1087 21 57 0 0 chr1 65911897 65911932 -131283500 + AT_rich Low_complexity Low_complexity 1 35 0 6 1087 221 383 0 0 chr1 65912020 65912080 -131283352 - RSINE1 SINE B4 -105 60 1 6 1087 1117 310 71 30 chr1 65912139 65912597 -131282835 + MYSERV16_I-int LTR ERVK 580 1057 -1269 6 1087 1116 82 0 0 chr1 65912597 65912744 -131282688 + B1_Mus1 SINE Alu 1 147 -1 6 1087 1117 310 71 30 chr1 65912744 65912778 -131282654 + MYSERV16_I-int LTR ERVK 1058 1091 -1235 6 1087 2584 204 66 14 chr1 65912756 65913730 -131281702 + MYSERV16_I-int LTR ERVK 1301 2324 -2 6 1087 1262 288 73 12 chr1 65913735 65914147 -131281285 + BGLII_B LTR ERVK 5 441 0 6 1087 1912 337 61 16 chr1 65914170 65914978 -131280454 + Lx8 LINE L1 6522 7365 -108 6 1087 28 0 0 0 chr1 65915058 65915086 -131280346 + AT_rich Low_complexity Low_complexity 1 28 0 6 1087 3343 33 2 5 chr1 65915852 65916249 -131279183 - MTA_Mm LTR MaLR 0 396 1 6 1087 8868 48 2 2 chr1 65916249 65917347 -131278085 - MTA_Mm-int LTR MaLR 0 1098 1 6 1087 3180 51 5 8 chr1 65917347 65917744 -131277688 - MTA_Mm LTR MaLR 0 396 1 6 1087 237 341 266 26 chr1 65918130 65918518 -131276914 + L2 LINE L2 2558 3038 -381 6 1087 30 0 0 0 chr1 65918928 65918958 -131276474 + AT_rich Low_complexity Low_complexity 1 30 0 6 1087 455 210 36 169 chr1 65919053 65919219 -131276213 + ETnERV2-int LTR ERVK 7070 7213 -193 6 1087 335 286 22 22 chr1 65919663 65919799 -131275633 + RMER16-int LTR ERVK 169 304 -6940 6 1087 2076 181 137 40 chr1 65919999 65920524 -131274908 + RMER16-int LTR ERVK 244 819 -4587 6 1087 527 195 88 0 chr1 65920529 65920642 -131274790 + RMER16-int LTR ERVK 938 1060 -5077 6 1087 277 279 0 55 chr1 65920655 65920746 -131274686 + ETnERV2-int LTR ERVK 2454 2539 -4867 6 1087 654 186 0 0 chr1 65920745 65920858 -131274574 + ETnERV2-int LTR ERVK 2641 2753 -4653 6 1087 6001 172 77 111 chr1 65920893 65922734 -131272698 + RLTR45-int LTR ERVK 4296 6072 -1172 6 1087 915 285 10 7 chr1 65922733 65923090 -131272342 + RLTR45-int LTR ERVK 7506 7828 -389 6 1087 4053 166 22 49 chr1 65923120 65923854 -131271578 + ETnERV2-int LTR ERVK 6500 7213 -193 6 1087 3537 152 0 9 chr1 65924131 65924697 -131270735 - Lx2 LINE L1 -410 6587 6027 6 1087 230 250 25 62 chr1 65924697 65924778 -131270654 + LTR48 LTR ERV1 577 654 -133 6 1087 2880 174 25 78 chr1 65924778 65925127 -131270305 + L1_Mur3 LINE L1 4267 4610 -1270 6 1087 396 0 0 0 chr1 65925127 65925171 -131270261 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1087 2880 174 25 78 chr1 65925171 65925329 -131270103 + L1_Mur3 LINE L1 4611 4735 -1145 6 1087 252 0 0 0 chr1 65925329 65925357 -131270075 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 6 1087 2880 174 25 78 chr1 65925357 65925554 -131269878 + L1_Mur3 LINE L1 4736 4934 -946 6 1087 21 0 0 0 chr1 65925562 65925583 -131269849 + AT_rich Low_complexity Low_complexity 1 21 0 6 1087 218 147 14 81 chr1 65927313 65927387 -131268045 + T-rich Low_complexity Low_complexity 4 72 0 6 1087 742 155 9 0 chr1 65927393 65927509 -131267923 - B1_Mur3 SINE Alu 0 149 33 6 1087 238 265 81 46 chr1 65927441 65927528 -131267904 - RLTR25B LTR ERVK -530 498 409 6 1087 229 384 50 21 chr1 65927592 65927733 -131267699 - L1MDa LINE L1 -5665 968 824 6 1087 349 267 151 0 chr1 65927838 65927924 -131267508 + MTE2b LTR MaLR 1 99 -280 6 1087 1315 305 50 28 chr1 65928056 65928712 -131266720 + MTE-int LTR MaLR 286 1160 -420 6 1088 297 197 0 0 chr1 65929249 65929315 -131266117 + GA-rich Low_complexity Low_complexity 1 66 0 6 1088 571 191 110 7 chr1 65929315 65929443 -131265989 - ORR1C1 LTR MaLR -191 187 53 6 1088 759 281 13 9 chr1 65929464 65929690 -131265742 - Lx9 LINE L1 -277 7367 7141 6 1088 232 83 20 20 chr1 65929846 65929895 -131265537 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1088 243 88 0 0 chr1 65930219 65930253 -131265179 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 1088 1026 141 0 0 chr1 65930760 65930930 -131264502 + (TTC)n Simple_repeat Simple_repeat 3 172 0 6 1088 647 276 47 12 chr1 65931057 65931226 -131264206 - B3 SINE B2 -16 200 26 6 1088 459 0 0 0 chr1 65931228 65931279 -131264153 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 1088 4506 108 5 12 chr1 65931279 65931935 -131263497 - Lx3A LINE L1 -13 6968 6318 6 1088 1997 118 62 0 chr1 65931935 65932239 -131263193 + L1_Mur1 LINE L1 5564 5886 0 6 1088 22 80 0 0 chr1 65932295 65932345 -131263087 + AT_rich Low_complexity Low_complexity 1 50 0 6 1088 358 255 160 0 chr1 65932623 65932717 -131262715 - Lx8 LINE L1 -228 7245 7137 6 1088 450 51 0 0 chr1 65932825 65932853 -131262579 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1088 1211 85 11 0 chr1 65932853 65933030 -131262402 + (CACG)n Simple_repeat Simple_repeat 1 179 0 6 1088 450 51 0 0 chr1 65933030 65933060 -131262372 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1088 2382 314 47 41 chr1 65933062 65934527 -131260905 - Lx9 LINE L1 -241 7403 5837 6 1088 463 285 148 6 chr1 65934605 65934916 -131260516 - L1MA7 LINE L1 -57 6234 5880 6 1088 221 0 0 33 chr1 65934953 65934983 -131260449 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1088 1070 49 28 0 chr1 65934983 65935118 -131260314 - B1_Mm SINE Alu -7 140 2 6 1088 914 189 39 188 chr1 65935125 65935562 -131259870 - Lx9 LINE L1 -4 7640 7269 6 1088 2259 78 18 45 chr1 65936173 65936509 -131258923 - IAPLTR2a LTR ERVK 0 327 1 6 1088 6093 37 12 12 chr1 65936511 65937255 -131258177 - IAPEz-int LTR ERVK -2 6479 5736 6 1088 2240 61 0 0 chr1 65937254 65937532 -131257900 - IAPEz-int LTR ERVK -4845 1636 1359 6 1088 3447 75 1 16 chr1 65937532 65938110 -131257322 - IAPEz-int LTR ERVK -5819 662 168 6 1088 244 302 0 0 chr1 65938110 65938163 -131257269 - RLTR27 LTR ERVK -34 275 223 6 1088 1153 97 10 80 chr1 65938163 65938364 -131257068 - IAPEz-int LTR ERVK -6286 195 9 6 1088 2480 84 74 25 chr1 65938365 65938757 -131256675 - IAPLTR2a LTR ERVK 0 411 1 6 1088 751 278 30 30 chr1 65939685 65939915 -131255517 + Lx8 LINE L1 6299 6528 -945 6 1088 668 332 35 26 chr1 65939909 65940252 -131255180 + Lx8 LINE L1 7127 7472 -1 6 1088 378 288 43 43 chr1 65941180 65941296 -131254136 + PB1D10 SINE Alu 1 116 -1 6 1088 588 289 7 0 chr1 65941379 65941521 -131253911 + B1_Mur1 SINE Alu 4 146 -3 6 1088 252 0 0 0 chr1 65941521 65941549 -131253883 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1088 1329 267 70 30 chr1 65942085 65942487 -131252945 + Lx9 LINE L1 6780 7197 -447 6 1088 707 228 30 18 chr1 65942487 65942652 -131252780 + RMER12 LTR ERVK 1 167 -1155 6 1088 1499 200 137 166 chr1 65942644 65943344 -131252088 + RMER12 LTR ERVK 626 1812 -36 6 1088 267 328 79 9 chr1 65943356 65943470 -131251962 + Lx9 LINE L1 7182 7303 -341 6 1088 2282 165 13 0 chr1 65943473 65943854 -131251578 - ORR1B1 LTR MaLR -8 386 1 6 1088 556 248 123 32 chr1 65943862 65944170 -131251262 + Lx9 LINE L1 7308 7643 -1 6 1088 346 256 68 0 chr1 65944617 65944734 -131250698 + L1MA7 LINE L1 6158 6282 -9 6 1088 553 312 82 54 chr1 65947058 65947573 -131247859 + L1M5 LINE L1 3460 3988 -2158 6 1088 516 315 36 30 chr1 65947891 65948058 -131247374 + MLT1A0 LTR MaLR 197 364 -1 6 1088 344 379 8 0 chr1 65948126 65948250 -131247182 + RSINE1 SINE B4 3 127 -38 6 1088 23 0 0 0 chr1 65948297 65948320 -131247112 + AT_rich Low_complexity Low_complexity 1 23 0 6 1088 3517 217 67 72 chr1 65948938 65950050 -131245382 + Lx7 LINE L1 6564 7670 -26 6 1088 24 0 0 0 chr1 65950391 65950415 -131245017 + AT_rich Low_complexity Low_complexity 1 24 0 6 1088 8376 124 9 3 chr1 65950667 65952278 -131243154 - Lx2B LINE L1 -142 6858 5240 6 1088 1080 149 17 42 chr1 65952276 65952514 -131242918 + L1_Mur2 LINE L1 4476 4707 -1170 6 1088 13328 85 28 0 chr1 65952688 65955371 -131240061 - L1Md_F LINE L1 -2753 3130 371 6 1088 1312 240 16 27 chr1 65955431 65955800 -131239632 + Lx7 LINE L1 6947 7311 -385 6 1088 220 278 14 27 chr1 65956384 65956458 -131238974 + GA-rich Low_complexity Low_complexity 3 75 0 6 1088 230 250 0 0 chr1 65956402 65956446 -131238986 + polypurine Low_complexity Low_complexity 2 45 0 6 1088 261 0 0 0 chr1 65956606 65956635 -131238797 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1088 564 15 0 0 chr1 65956635 65956699 -131238733 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1088 4582 94 23 79 chr1 65956832 65957628 -131237804 + RMER17A LTR ERVK 1 751 0 6 1088 509 0 0 16 chr1 65957902 65957964 -131237468 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1088 285 417 28 21 chr1 65958351 65958493 -131236939 + B1F SINE Alu 1 143 -6 6 1088 703 309 22 40 chr1 65958562 65958785 -131236647 + MTEa LTR MaLR 1 219 -160 6 1088 739 234 40 23 chr1 65958868 65959043 -131236389 + MTE-int LTR MaLR 35 212 -1368 6 1088 1607 164 51 99 chr1 65959117 65959274 -131236158 - ORR1C1 LTR MaLR -23 355 186 6 1088 3362 85 102 63 chr1 65959274 65959815 -131235617 - LTRIS2 LTR ERV1 0 564 3 6 1088 1607 164 51 99 chr1 65959815 65960030 -131235402 - ORR1C1 LTR MaLR -193 185 1 6 1088 247 303 30 0 chr1 65960066 65960132 -131235300 - MTE2b LTR MaLR -62 317 250 7 1088 647 120 8 0 chr1 65960677 65960794 -131234638 + (TC)n Simple_repeat Simple_repeat 1 118 0 7 1088 341 145 14 18 chr1 65960841 65960907 -131234525 - B2_Mm2 SINE B2 -82 116 46 7 1088 1062 159 11 0 chr1 65960959 65961135 -131234297 - B2_Mm1t SINE B2 -14 179 2 7 1088 190 0 67 0 chr1 65962454 65962484 -131232948 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1088 355 236 48 24 chr1 65962643 65962769 -131232663 - Lx7 LINE L1 -20 7676 7548 7 1088 1443 159 97 188 chr1 65962925 65963398 -131232034 - RLTR23 LTR ERV1 0 430 1 7 1088 658 274 101 50 chr1 65963473 65963692 -131231740 + B4 SINE B4 24 253 -39 7 1088 345 24 0 0 chr1 65963701 65963743 -131231689 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1088 546 79 0 0 chr1 65963743 65963819 -131231613 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1088 1406 185 48 12 chr1 65963940 65964362 -131231070 - RMER17C LTR ERVK -519 439 16 7 1088 364 295 41 48 chr1 65964742 65964888 -131230544 + RLTR23 LTR ERV1 286 430 0 7 1088 971 260 77 34 chr1 65965094 65965417 -131230015 - Lx8 LINE L1 -15 7458 7122 7 1088 300 224 69 23 chr1 65965421 65965508 -131229924 - RLTR23 LTR ERV1 -10 420 330 7 1088 342 0 0 0 chr1 65965879 65965917 -131229515 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 1088 989 252 101 23 chr1 65966037 65966382 -131229050 - Lx8 LINE L1 -383 7090 6719 7 1088 737 288 5 5 chr1 65966397 65966596 -131228836 - Lx8 LINE L1 -1057 6416 6218 7 1088 214 267 17 0 chr1 65966650 65966710 -131228722 + (CATA)n Simple_repeat Simple_repeat 3 63 0 7 1088 260 232 24 0 chr1 65966731 65966813 -131228619 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 7 1088 476 260 101 9 chr1 65966887 65967189 -131228243 + Lx7 LINE L1 5592 5926 -1547 7 1088 331 330 50 68 chr1 65967664 65967885 -131227547 - RMER12 LTR ERVK -5 1317 1101 7 1088 5026 100 52 16 chr1 65968075 65968162 -131227270 - RLTR22_Mur LTR ERVK -1017 831 719 7 1088 234 0 0 0 chr1 65968162 65968188 -131227244 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1088 5026 100 52 16 chr1 65968188 65968902 -131226530 - RLTR22_Mur LTR ERVK -1130 718 2 7 1088 4059 52 22 15 chr1 65969158 65969706 -131225726 + L1Md_F2 LINE L1 6031 6582 0 7 1088 648 313 33 6 chr1 65969710 65969893 -131225539 - MTEa LTR MaLR -189 190 3 7 1088 534 50 12 0 chr1 65970902 65970982 -131224450 - L1Md_F2 LINE L1 -1 6581 6501 7 1088 21 0 0 0 chr1 65971266 65971287 -131224145 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 596 164 0 52 chr1 65971290 65971406 -131224026 - PB1D7 SINE Alu -9 111 2 7 1088 194 0 39 0 chr1 65973586 65973612 -131221820 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1088 305 273 8 76 chr1 65974164 65974283 -131221149 - B1F SINE Alu -34 115 5 7 1088 241 360 0 66 chr1 65974194 65974316 -131221116 - B4A SINE B4 -122 170 57 7 1088 321 259 113 36 chr1 65974967 65975109 -131220323 + MIR SINE MIR 8 161 -107 7 1088 1389 224 67 52 chr1 65975203 65975647 -131219785 - RMER2 LTR ERV1 -92 475 1 7 1088 192 119 16 33 chr1 65975810 65975871 -131219561 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1088 189 0 0 0 chr1 65975885 65975906 -131219526 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1088 270 0 0 0 chr1 65975906 65975935 -131219497 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1088 198 0 0 0 chr1 65975935 65975956 -131219476 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 1088 818 250 30 104 chr1 65976320 65976411 -131219021 + RMER17C LTR ERVK 4 95 -315 7 1088 986 126 6 0 chr1 65976411 65976578 -131218854 + (TC)n Simple_repeat Simple_repeat 2 169 0 7 1088 818 250 30 104 chr1 65976578 65976852 -131218580 + RMER17C LTR ERVK 96 342 -68 7 1088 338 267 84 84 chr1 65977318 65977543 -131217889 + MER33 DNA MER1_type 30 254 -70 7 1088 208 28 83 0 chr1 65978325 65978361 -131217071 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1088 1766 194 76 25 chr1 65978844 65978915 -131216517 + MTC LTR MaLR 3 74 -347 7 1088 3729 147 120 1 chr1 65978915 65979574 -131215858 - RMER19A LTR ERVK 0 737 1 7 1088 1766 194 76 25 chr1 65979574 65979899 -131215533 + MTC LTR MaLR 75 419 -2 7 1088 807 297 132 34 chr1 65981189 65981635 -131213797 + RMER5 LTR ERV1 33 522 -12 7 1088 403 271 34 34 chr1 65981852 65982058 -131213374 - L1MC4 LINE L1 -391 7651 7446 7 1088 306 343 40 12 chr1 65982079 65982203 -131213229 - PB1D10 SINE Alu -27 122 2 7 1088 21 0 0 0 chr1 65982357 65982378 -131213054 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 2544 203 100 25 chr1 65982428 65983136 -131212296 - Lx9 LINE L1 0 7644 6884 7 1088 760 146 15 18 chr1 65983178 65983349 -131212083 - RMER16 LTR ERVK -83 450 248 7 1088 6942 45 0 0 chr1 65983349 65984437 -131210995 - L1Md_F2 LINE L1 -127 6455 5368 7 1088 4162 108 26 5 chr1 65984448 65985091 -131210341 - Lx LINE L1 -409 6245 5589 7 1088 812 258 36 10 chr1 65985176 65985368 -131210064 + B3 SINE B2 14 210 -6 7 1088 575 39 0 13 chr1 65986440 65986519 -131208913 + (CAAAA)n Simple_repeat Simple_repeat 3 80 0 7 1088 216 229 0 68 chr1 65986783 65986886 -131208546 + (TAAA)n Simple_repeat Simple_repeat 1 96 0 7 1088 1131 272 93 27 chr1 65988074 65988541 -131206891 + L1MB8 LINE L1 5281 5776 -402 7 1088 1620 0 0 0 chr1 65988541 65988721 -131206711 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 7 1088 1131 272 93 27 chr1 65988721 65988928 -131206504 + L1MB8 LINE L1 5777 5999 -179 7 1088 894 251 140 0 chr1 65988905 65989176 -131206256 + Lx7 LINE L1 56 364 -7364 7 1088 2143 221 54 23 chr1 65989189 65989315 -131206117 + Lx7 LINE L1 655 785 -6943 7 1088 3361 13 37 0 chr1 65989315 65989697 -131205735 - MTA_Mm LTR MaLR 0 396 1 7 1088 2143 188 163 18 chr1 65989697 65990511 -131204921 + Lx7 LINE L1 786 1718 -4162 7 1088 4556 162 40 11 chr1 65990506 65991504 -131203928 + Lx7 LINE L1 2294 3320 -2560 7 1088 795 183 20 70 chr1 65991511 65991711 -131203721 - Lx2B LINE L1 -5 6995 6806 7 1088 1807 149 79 0 chr1 65991716 65992072 -131203360 - Lx2B LINE L1 -820 6180 5797 7 1088 4029 164 36 3 chr1 65992069 65992841 -131202591 + Lx2B LINE L1 5015 5812 -65 7 1088 226 150 0 0 chr1 65992834 65992874 -131202558 + Lx7 LINE L1 3305 3344 -2536 7 1088 4305 176 19 57 chr1 65992876 65993953 -131201479 + Lx7 LINE L1 4931 5966 -1730 7 1088 896 218 114 0 chr1 65993953 65994155 -131201277 + URR1A DNA MER1_type 2 226 0 7 1088 2760 232 45 35 chr1 65994155 65994545 -131200887 + Lx7 LINE L1 5967 6374 -1322 7 1088 1486 6 0 0 chr1 65994535 65994706 -131200726 + L1Md_A LINE L1 5416 5586 -297 7 1088 9056 3 0 0 chr1 65994706 65995702 -131199730 + L1Md_A LINE L1 5587 6582 0 7 1088 246 125 0 0 chr1 65995709 65995757 -131199675 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1088 9069 2 0 0 chr1 65995774 65996770 -131198662 + L1Md_A LINE L1 5587 6582 0 7 1088 3290 280 38 4 chr1 65996770 65997694 -131197738 + Lx6 LINE L1 6342 7296 -164 7 1088 341 282 55 0 chr1 65997740 65997850 -131197582 + Lx7 LINE L1 7169 7284 -412 7 1088 1787 162 150 88 chr1 65997850 65998270 -131197162 - RLTR41 LTR ERV1 0 446 1 7 1088 297 51 0 0 chr1 65998305 65998344 -131197088 + (TTG)n Simple_repeat Simple_repeat 1 39 0 7 1088 332 43 22 0 chr1 65998358 65998404 -131197028 + (TGG)n Simple_repeat Simple_repeat 1 47 0 7 1088 246 105 0 0 chr1 65998445 65998483 -131196949 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 7 1088 473 0 0 17 chr1 65998830 65998888 -131196544 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1088 479 95 14 0 chr1 65999773 65999847 -131195585 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1088 231 146 0 0 chr1 65999851 65999892 -131195540 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1088 234 309 154 57 chr1 66000121 66000296 -131195136 - LTR82B Low_complexity ERVL -9 821 630 1 1088 208 269 19 0 chr1 66000378 66000430 -131195002 + CT-rich Low_complexity Low_complexity 3 55 0 2 1088 297 281 30 30 chr1 66000430 66000529 -131194903 - ID_B1 SINE B4 -31 193 95 3 1088 254 341 47 23 chr1 66002427 66002556 -131192876 - L2 LINE L2 -1190 2229 2098 4 1088 1954 262 70 24 chr1 66002564 66003224 -131192208 + Lx7 LINE L1 6473 7162 -534 5 1088 3209 42 0 0 chr1 66003223 66003628 -131191804 + L1Md_F2 LINE L1 5181 5585 -298 6 1088 8344 38 1 0 chr1 66003629 66004624 -131190808 + L1Md_F2 LINE L1 5587 6582 0 6 1088 518 284 55 25 chr1 66004627 66004829 -131190603 + Lx7 LINE L1 7160 7367 -329 5 1088 23 33 0 0 chr1 66004888 66004918 -131190514 + AT_rich Low_complexity Low_complexity 1 30 0 7 1088 380 298 24 24 chr1 66004936 66005060 -131190372 + RSINE1 SINE B4 1 124 -41 8 1088 942 209 110 0 chr1 66005992 66006183 -131189249 + B3 SINE B2 1 212 -4 9 1088 22 0 0 0 chr1 66006186 66006208 -131189224 + AT_rich Low_complexity Low_complexity 1 22 0 1 1088 356 299 85 8 chr1 66006568 66006686 -131188746 + MLT1A1 LTR MaLR 28 154 -254 1 1088 228 185 0 0 chr1 66007071 66007125 -131188307 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1088 236 185 0 115 chr1 66007509 66007570 -131187862 + Lx3C LINE L1 6809 6862 -111 1 1088 401 171 128 0 chr1 66007580 66007697 -131187735 + Lx3C LINE L1 6838 6969 -7 1 1088 405 269 25 100 chr1 66007989 66008109 -131187323 + B1_Mur1 SINE Alu 1 111 -38 1 1088 360 339 16 39 chr1 66008965 66009094 -131186338 + B4A SINE B4 2 127 -165 1 1088 23 33 0 0 chr1 66009292 66009322 -131186110 + AT_rich Low_complexity Low_complexity 1 30 0 1 1088 5422 79 14 3 chr1 66009759 66010481 -131184951 + L1_Mus1 LINE L1 5837 6566 -1 1 1088 270 73 0 0 chr1 66010513 66010554 -131184878 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1088 366 23 0 0 chr1 66011431 66011474 -131183958 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1088 303 221 48 0 chr1 66011477 66011581 -131183851 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 1088 466 250 117 31 chr1 66012618 66012894 -131182538 + RLTR40 LTR ERVK 368 757 -60 2 1088 656 114 30 0 chr1 66013231 66013362 -131182070 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 1088 1060 209 40 15 chr1 66013611 66013883 -131181549 + Lx3C LINE L1 6696 6974 -2 2 1088 679 289 132 28 chr1 66014133 66014770 -131180662 - L1MB1 LINE L1 -82 6086 5384 2 1088 444 37 0 0 chr1 66014812 66014866 -131180566 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 2 1088 265 222 14 0 chr1 66015021 66015093 -131180339 - L1M3 LINE L1 -3823 2317 2245 2 1088 397 241 11 0 chr1 66016907 66016994 -131178438 + MTE2b LTR MaLR 1 88 -291 2 1088 2372 216 0 41 chr1 66017010 66017521 -131177911 - Lx5 LINE L1 -3 7047 6558 2 1088 2984 156 4 11 chr1 66017510 66018036 -131177396 + Lx5 LINE L1 5594 6115 -935 2 1088 356 138 15 0 chr1 66018097 66018162 -131177270 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1088 539 292 18 53 chr1 66019115 66019130 -131176302 - RSINE1 SINE B4 0 165 151 3 1088 528 16 0 0 chr1 66019130 66019191 -131176241 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1088 539 292 18 53 chr1 66019191 66019345 -131176087 - RSINE1 SINE B4 -15 150 3 3 1088 230 355 39 82 chr1 66019744 66020023 -131175409 + L2a LINE L2 3070 3336 -90 3 1088 37256 56 1 23 chr1 66020024 66026728 -131168704 - L1Md_T LINE L1 0 6582 98 3 1088 21 0 0 0 chr1 66026930 66026951 -131168481 + AT_rich Low_complexity Low_complexity 1 21 0 3 1088 546 135 336 0 chr1 66027059 66027163 -131168269 - B1_Mus1 SINE Alu -9 139 1 3 1088 401 348 145 20 chr1 66027303 66027558 -131167874 + B4 SINE B4 2 288 -4 3 1088 9712 91 11 11 chr1 66030061 66031534 -131163898 - L1_Mur1 LINE L1 -897 4989 3516 3 1088 3238 104 59 2 chr1 66031543 66032034 -131163398 + Lx3A LINE L1 6461 6979 -2 3 1088 26 0 0 0 chr1 66032118 66032144 -131163288 + AT_rich Low_complexity Low_complexity 1 26 0 4 1088 461 200 0 28 chr1 66032144 66032252 -131163180 - Lx4A LINE L1 -3 7055 6951 4 1088 1659 124 8 0 chr1 66032304 66032561 -131162871 - Lx4A LINE L1 -217 6841 6583 4 1088 284 0 28 0 chr1 66032668 66032704 -131162728 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1088 397 255 145 5 chr1 66032708 66032901 -131162531 + L1M4c LINE L1 2089 2308 -4076 4 1088 573 338 29 29 chr1 66032904 66033184 -131162248 + B4A SINE B4 1 280 -12 4 1088 549 279 30 76 chr1 66033219 66033417 -131162015 + B3A SINE B2 1 189 -9 4 1088 252 282 23 12 chr1 66033440 66033526 -131161906 - MIRm SINE MIR -138 138 52 4 1088 22 56 0 0 chr1 66033684 66033720 -131161712 + AT_rich Low_complexity Low_complexity 1 36 0 4 1088 227 221 55 46 chr1 66033961 66034070 -131161362 - Lx9 LINE L1 -130 7514 7405 4 1088 1356 67 0 0 chr1 66034571 66034751 -131160681 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1088 543 31 0 0 chr1 66034754 66034819 -131160613 + (GAGAA)n Simple_repeat Simple_repeat 1 65 0 5 1088 286 273 22 11 chr1 66038072 66038161 -131157271 + MLT1A LTR MaLR 275 364 -10 5 1088 251 314 61 74 chr1 66038360 66038508 -131156924 - RSINE1 SINE B4 -18 147 2 5 1088 30 105 0 0 chr1 66038592 66038706 -131156726 + AT_rich Low_complexity Low_complexity 1 114 0 5 1088 2833 61 3 0 chr1 66038885 66039246 -131156186 - L1_Mus1 LINE L1 0 6567 6206 5 1088 605 139 0 80 chr1 66039246 66039360 -131156072 - B2_Mm2 SINE B2 -16 179 76 5 1088 186 189 0 0 chr1 66039361 66039398 -131156034 + T-rich Low_complexity Low_complexity 1 37 0 5 1088 29812 105 19 3 chr1 66039405 66045469 -131149963 - L1_Mus1 LINE L1 0 6654 425 5 1088 487 155 36 0 chr1 66045497 66045581 -131149851 - B2_Mm2 SINE B2 -108 87 1 5 1088 4689 117 49 11 chr1 66045613 66046393 -131149039 + RMER17D2 LTR ERVK 1 809 0 5 1088 184 350 107 21 chr1 66046587 66046727 -131148705 - MIRb SINE MIR -115 153 2 5 1088 402 79 0 0 chr1 66046861 66046924 -131148508 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 6 1088 720 232 148 0 chr1 66047678 66047833 -131147599 + B3 SINE B2 1 178 -38 6 1088 207 0 0 0 chr1 66047839 66047862 -131147570 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1088 570 180 14 7 chr1 66047862 66048002 -131147430 + (TA)n Simple_repeat Simple_repeat 1 141 0 6 1088 25 51 0 0 chr1 66048038 66048077 -131147355 + AT_rich Low_complexity Low_complexity 1 39 0 6 1088 25 0 0 0 chr1 66048368 66048393 -131147039 + AT_rich Low_complexity Low_complexity 1 25 0 6 1088 26 0 0 0 chr1 66049302 66049328 -131146104 + AT_rich Low_complexity Low_complexity 1 26 0 6 1088 447 327 39 19 chr1 66051073 66051279 -131144153 + Charlie5 DNA MER1_type 1681 1890 -734 6 1088 9141 99 29 8 chr1 66051857 66053280 -131142152 + Lx2 LINE L1 5547 6997 0 6 1088 200 118 29 0 chr1 66053280 66053314 -131142118 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 6 1088 1553 137 20 85 chr1 66054102 66054502 -131140930 - RMER17C LTR ERVK -36 374 1 7 1088 424 331 13 19 chr1 66055441 66055595 -131139837 + MER31B LTR ERV1 12 164 -302 7 1088 454 269 93 7 chr1 66055644 66055794 -131139638 + MER31B LTR ERV1 292 454 -12 7 1088 746 307 4 32 chr1 66055864 66056110 -131139322 - Lx5 LINE L1 -17 7033 6795 7 1088 382 231 0 0 chr1 66056131 66056222 -131139210 - L1MA5 LINE L1 -359 5941 5851 7 1088 345 263 16 112 chr1 66056227 66056415 -131139017 + L1M2 LINE L1 5503 5672 -619 7 16 30423 68 45 2 chr1 66057965 66063637 -131131795 - L1Md_F3 LINE L1 -2 6585 563 7 1089 1171 170 0 0 chr1 66063630 66063836 -131131596 - L1Md_F3 LINE L1 -6282 337 132 7 1089 2229 78 20 9 chr1 66063835 66064183 -131131249 + L1Md_F2 LINE L1 1937 2288 -3595 7 1089 2033 123 44 41 chr1 66064185 66064549 -131130883 - IAPLTR1_Mm LTR ERVK -2 365 1 7 1089 54190 18 5 11 chr1 66064549 66071061 -131124371 - IAPEz-int LTR ERVK 0 6481 6 7 1089 2033 123 44 41 chr1 66071061 66071425 -131124007 - IAPLTR1_Mm LTR ERVK -2 365 1 7 1089 23715 73 1 0 chr1 66071425 66074724 -131120708 + L1Md_F2 LINE L1 2283 5586 -297 7 1089 8081 47 3 2 chr1 66074724 66075707 -131119725 + L1Md_F2 LINE L1 5587 6570 -12 7 1089 5236 98 1 18 chr1 66075975 66077320 -131118112 - L1Md_A LINE L1 -3935 1948 632 7 1089 1686 215 79 15 chr1 66077369 66077958 -131117474 + Lx9 LINE L1 5399 6051 -1593 7 1089 503 307 179 37 chr1 66078206 66078531 -131116901 + MLT1D LTR MaLR 25 395 -110 8 1089 212 254 0 0 chr1 66079301 66079356 -131116076 + CT-rich Low_complexity Low_complexity 2 56 0 8 1089 429 20 0 0 chr1 66079357 66079407 -131116025 + (TTA)n Simple_repeat Simple_repeat 2 51 0 8 1089 2854 151 54 9 chr1 66080019 66080574 -131114858 + L1_Mur2 LINE L1 3748 4327 -1550 8 1089 290 380 25 4 chr1 66080819 66081099 -131114333 - L1M5 LINE L1 -328 5796 5511 8 1089 285 29 0 0 chr1 66082715 66082749 -131112683 + (TAA)n Simple_repeat Simple_repeat 2 35 0 8 1089 189 147 0 0 chr1 66083278 66083312 -131112120 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 8 1089 35481 23 2 7 chr1 66083489 66088690 -131106742 + L1Md_T LINE L1 416 5586 -297 8 1089 8346 41 0 0 chr1 66088690 66089686 -131105746 + L1Md_T LINE L1 5587 6582 0 8 1089 340 339 0 67 chr1 66089871 66089991 -131105441 - PB1D10 SINE Alu 0 117 6 8 1089 632 296 16 39 chr1 66090006 66090263 -131105169 + Lx8 LINE L1 7081 7331 -142 8 1089 408 271 104 15 chr1 66090487 66090622 -131104810 - MT2A LTR ERVL 0 533 387 9 1089 3730 158 30 8 chr1 66092860 66093809 -131101623 - Lx4B LINE L1 -732 6326 5354 9 1089 3902 173 24 39 chr1 66093809 66094535 -131100897 + Lx4B LINE L1 6328 7041 -17 9 1089 189 74 0 0 chr1 66094535 66094562 -131100870 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 9 1089 3902 173 24 39 chr1 66094562 66094575 -131100857 + Lx4B LINE L1 7042 7055 -3 9 1089 409 275 49 24 chr1 66094729 66094852 -131100580 - MTEa LTR MaLR -3 376 251 9 1089 36366 13 0 7 chr1 66095109 66100269 -131095163 + L1Md_A LINE L1 468 5586 -297 9 1089 8745 17 1 0 chr1 66100269 66101263 -131094169 + L1Md_A LINE L1 5587 6581 -1 9 1089 469 152 21 32 chr1 66101728 66101823 -131093609 + Lx9 LINE L1 7384 7477 -167 9 1089 6097 39 3 3 chr1 66102102 66102934 -131092498 + L1Md_F2 LINE L1 5791 6582 0 9 1089 1753 231 121 54 chr1 66103051 66103573 -131091859 - RLTR20B3 LTR ERVK 0 577 21 9 1089 637 296 68 32 chr1 66103577 66103989 -131091443 + L1MA7 LINE L1 5705 6131 -160 9 1089 204 200 0 0 chr1 66104489 66104544 -131090888 + GA-rich Low_complexity Low_complexity 2 56 0 9 1089 21 0 0 0 chr1 66104840 66104861 -131090571 + AT_rich Low_complexity Low_complexity 1 21 0 1 1089 182 108 54 0 chr1 66104917 66104954 -131090478 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 1 1089 832 326 57 16 chr1 66104978 66105224 -131090208 + B4 SINE B4 2 257 -35 1 1089 248 91 23 0 chr1 66106175 66106219 -131089213 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1 1089 283 221 135 0 chr1 66106972 66107076 -131088356 - Lx7 LINE L1 0 7696 7579 1 1089 702 152 0 0 chr1 66107077 66107235 -131088197 + CT-rich Low_complexity Low_complexity 1 158 0 1 1089 441 0 0 0 chr1 66109075 66109124 -131086308 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1089 1112 83 7 0 chr1 66110641 66110786 -131084646 - B1_Mm SINE Alu -1 146 1 1 1089 226 0 59 0 chr1 66111422 66111456 -131083976 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1089 2286 69 0 53 chr1 66111510 66111832 -131083600 - L1_Mus2 LINE L1 0 6566 6262 1 1089 341 244 52 96 chr1 66112124 66112260 -131083172 - L1M4 LINE L1 -2452 3694 3565 1 1089 21 0 0 0 chr1 66113030 66113051 -131082381 + AT_rich Low_complexity Low_complexity 1 21 0 1 1089 23 0 0 0 chr1 66113538 66113561 -131081871 + AT_rich Low_complexity Low_complexity 1 23 0 1 1089 32 26 0 0 chr1 66113746 66113785 -131081647 + AT_rich Low_complexity Low_complexity 1 39 0 1 1089 26 30 0 0 chr1 66114332 66114365 -131081067 + AT_rich Low_complexity Low_complexity 1 33 0 1 1089 225 139 0 0 chr1 66114843 66114886 -131080546 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1089 471 144 67 0 chr1 66114936 66115026 -131080406 + L1VL1 LINE L1 193 288 -6134 1 1089 32430 66 4 3 chr1 66115022 66119385 -131076047 + L1Md_F2 LINE L1 1222 5586 -297 1 1089 8030 46 3 0 chr1 66119385 66120378 -131075054 + L1Md_F2 LINE L1 5587 6582 0 1 1089 5748 48 0 7 chr1 66120379 66120948 -131074484 + L1_Mm LINE L1 4992 5560 -323 1 1089 3757 48 6 52 chr1 66120948 66121453 -131073979 - LTRIS_Mm LTR ERV1 0 482 1 1 1089 5748 48 0 7 chr1 66121453 66121599 -131073833 + L1_Mm LINE L1 5561 5702 -181 1 1089 370 259 0 0 chr1 66121637 66121718 -131073714 - L1_Mur2 LINE L1 -6268 444 364 1 1089 703 210 11 0 chr1 66121987 66122163 -131073269 + GA-rich Low_complexity Low_complexity 2 179 0 1 1089 873 127 19 0 chr1 66122122 66122279 -131073153 + (GGGGA)n Simple_repeat Simple_repeat 2 161 0 1 1089 1250 80 6 0 chr1 66122279 66122455 -131072977 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 1 1089 582 75 0 0 chr1 66122456 66122536 -131072896 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1 1089 38 0 0 0 chr1 66125035 66125073 -131070359 + AT_rich Low_complexity Low_complexity 1 38 0 1 1089 5538 191 56 42 chr1 66125598 66127367 -131068065 + L1_Mur2 LINE L1 888 2621 -3256 1 1089 2184 195 0 0 chr1 66127367 66127757 -131067675 - ORR1B1-int LTR MaLR -1573 390 1 1 1089 1797 169 42 91 chr1 66127762 66128147 -131067285 - ORR1B1 LTR MaLR -9 385 20 1 1089 2547 277 134 17 chr1 66128148 66129127 -131066305 + Lx6 LINE L1 6155 7451 -9 1 1089 202 118 0 29 chr1 66129436 66129471 -131065961 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1089 2085 298 9 69 chr1 66129560 66130550 -131064882 + Lx6 LINE L1 6169 7433 -27 1 1089 337 169 12 12 chr1 66130550 66130634 -131064798 + GA-rich Low_complexity Low_complexity 1 84 0 1 1089 967 284 24 111 chr1 66131424 66131848 -131063584 + RMER15 LTR ERVL 189 575 0 1 1089 653 301 26 0 chr1 66131851 66132007 -131063425 - B3A SINE B2 -16 182 23 1 1089 617 272 104 14 chr1 66132022 66132242 -131063190 + RCHARR1 DNA MER1_type 88 327 -647 1 1089 547 293 38 70 chr1 66132242 66132400 -131063032 + RSINE1 SINE B4 5 157 -8 1 1089 1843 217 114 33 chr1 66132420 66132905 -131062527 + RCHARR1 DNA MER1_type 339 882 -92 1 1089 2628 184 57 9 chr1 66132905 66133452 -131061980 - RMER15 LTR ERVL -2 573 1 1 1089 1843 217 114 33 chr1 66133452 66133547 -131061885 + RCHARR1 DNA MER1_type 883 966 -8 1 1089 522 127 227 0 chr1 66133737 66133847 -131061585 - RLTR25A LTR ERVK 0 1103 969 1 1089 988 265 62 83 chr1 66133874 66134306 -131061126 + RLTR23 LTR ERV1 8 430 0 1 1089 4835 151 92 3 chr1 66134309 66135187 -131060245 - RLTR25A LTR ERVK -137 966 11 1 1089 278 215 75 0 chr1 66135312 66135419 -131060013 - Lx9 LINE L1 -2 7642 7528 1 1089 4476 120 8 59 chr1 66135643 66136878 -131058554 + L1VL4 LINE L1 333 1493 -2066 1 1089 287 100 0 16 chr1 66136873 66136934 -131058498 + L1_Mus3 LINE L1 6579 6638 0 1 1089 4899 58 0 0 chr1 66137015 66137623 -131057809 + L1Md_F2 LINE L1 5963 6570 -12 1 1089 307 169 42 10 chr1 66137696 66137792 -131057640 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1089 313 247 0 12 chr1 66137963 66138049 -131057383 - L1MA4 LINE L1 -414 5886 5802 1 1089 510 70 0 0 chr1 66139059 66139130 -131056302 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1089 537 263 106 28 chr1 66139243 66139356 -131056076 - Lx9 LINE L1 -1 7643 7530 1 1089 189 0 0 0 chr1 66139356 66139377 -131056055 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1089 537 263 106 28 chr1 66139377 66139406 -131056026 - Lx9 LINE L1 -115 7529 7488 1 1089 219 114 0 0 chr1 66139406 66139441 -131055991 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1 1089 537 263 106 28 chr1 66139441 66139551 -131055881 - Lx9 LINE L1 -157 7487 7371 1 1089 246 62 0 0 chr1 66141208 66141240 -131054192 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1089 905 63 71 0 chr1 66141240 66141367 -131054065 - B1_Mus1 SINE Alu -11 137 2 1 1089 3686 74 0 2 chr1 66141377 66141893 -131053539 - L1_Mus1 LINE L1 0 6567 6091 1 1089 1590 73 14 0 chr1 66141893 66142112 -131053320 + L1_Mus1 LINE L1 5857 6078 -489 1 1089 582 309 104 55 chr1 66143200 66143508 -131051924 - ORR1E LTR MaLR -11 348 26 1 1089 3338 28 8 0 chr1 66144029 66144422 -131051010 - MTA_Mm LTR MaLR 0 396 1 1 1089 426 275 38 29 chr1 66144423 66144528 -131050904 - RSINE1 SINE B4 -22 143 38 1 1089 211 141 0 30 chr1 66144659 66144725 -131050707 + A-rich Low_complexity Low_complexity 3 66 0 1 1089 281 250 31 0 chr1 66144862 66144926 -131050506 + ID4_ SINE ID 2 67 -16 1 1089 1288 64 0 10 chr1 66144927 66145132 -131050300 + (GAAA)n Simple_repeat Simple_repeat 1 202 0 1 1089 22 56 0 0 chr1 66145232 66145268 -131050164 + AT_rich Low_complexity Low_complexity 1 36 0 1 1089 1985 115 72 0 chr1 66145407 66145712 -131049720 + ORR1A2 LTR MaLR 1 327 0 1 1089 234 381 63 25 chr1 66145992 66146151 -131049281 + LTR33B LTR ERVL 336 500 -3 1 1089 257 262 99 12 chr1 66146934 66147015 -131048417 + PB1D7 SINE Alu 20 107 -13 1 1089 198 171 0 0 chr1 66148308 66148349 -131047083 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1089 380 310 110 21 chr1 66148360 66148597 -131046835 + L1MD LINE L1 2703 2960 -3186 1 1089 404 217 0 0 chr1 66149020 66149089 -131046343 + ID4 SINE ID 2 70 -13 1 1089 27 0 0 0 chr1 66149606 66149633 -131045799 + AT_rich Low_complexity Low_complexity 1 27 0 1 1089 363 44 0 0 chr1 66150467 66150512 -131044920 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 1089 226 217 0 32 chr1 66151044 66151106 -131044326 + A-rich Low_complexity Low_complexity 2 61 0 1 1089 4420 31 2 0 chr1 66151382 66151904 -131043528 - L1Md_T LINE L1 0 6582 6060 1 1089 218 136 23 0 chr1 66152043 66152087 -131043345 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1089 822 183 0 0 chr1 66152087 66152256 -131043176 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 1089 6063 83 7 2 chr1 66152366 66153240 -131042192 - L1_Mur1 LINE L1 -2010 3876 2999 1 1089 8255 81 34 12 chr1 66153240 66154416 -131041016 + Lx3_Mus LINE L1 5808 7009 0 1 1089 1917 169 30 45 chr1 66154435 66154831 -131040601 + Lx5 LINE L1 6053 6442 -608 1 1089 999 188 60 48 chr1 66154823 66155061 -131040371 + Lx4B LINE L1 6801 7043 -15 1 1089 194 0 39 0 chr1 66155061 66155087 -131040345 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1089 999 188 60 48 chr1 66155087 66155099 -131040333 + Lx4B LINE L1 7044 7054 -4 1 1089 453 300 79 39 chr1 66155333 66155562 -131039870 + MIRb SINE MIR 20 257 -11 1 1089 237 171 0 0 chr1 66155565 66155606 -131039826 - ORR1E LTR MaLR 0 359 319 1 1089 441 0 0 0 chr1 66155641 66155690 -131039742 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1089 764 58 213 8 chr1 66155870 66155992 -131039440 + B1_Mm SINE Alu 1 147 0 1 1089 230 353 115 19 chr1 66156695 66156903 -131038529 + L2 LINE L2 1987 2214 -1205 1 1089 250 344 81 25 chr1 66157137 66157298 -131038134 + L2 LINE L2 2306 2475 -944 1 1089 1161 249 6 41 chr1 66157347 66157665 -131037767 - Lx9 LINE L1 -470 7174 6868 1 1089 351 298 48 16 chr1 66157656 66157782 -131037650 - Lx9 LINE L1 -1167 6477 6348 1 1089 375 23 0 0 chr1 66157784 66157828 -131037604 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1089 601 202 26 0 chr1 66157946 66158060 -131037372 - Lx9 LINE L1 -139 5708 5592 1 1089 2052 224 40 18 chr1 66158058 66158605 -131036827 + Lx9 LINE L1 4974 5532 -315 1 1089 3228 145 130 21 chr1 66158606 66159220 -131036212 + Lx4A LINE L1 6378 7058 0 1 1089 340 191 0 42 chr1 66159289 66159360 -131036072 + L1_Rod LINE L1 5536 5603 -244 1 1089 21 36 0 0 chr1 66159360 66159388 -131036044 + AT_rich Low_complexity Low_complexity 1 28 0 1 1089 1099 253 117 21 chr1 66159389 66159773 -131035659 - Lx8 LINE L1 -4 7469 7049 1 1089 2156 247 164 15 chr1 66160010 66160679 -131034753 - Lx6 LINE L1 -26 7434 6666 1 1089 274 311 99 11 chr1 66160917 66161008 -131034424 - LTR16C LTR ERVL -163 326 228 1 1089 209 239 0 40 chr1 66161040 66161114 -131034318 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 1 1089 525 32 0 0 chr1 66161153 66161216 -131034216 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1089 302 0 0 26 chr1 66161322 66161361 -131034071 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1 1089 1160 110 0 0 chr1 66161363 66161526 -131033906 - B2_Mm2 SINE B2 -31 164 2 1 1089 210 71 0 0 chr1 66161652 66161680 -131033752 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1089 838 174 179 0 chr1 66162415 66162605 -131032827 + URR1A DNA MER1_type 2 225 -1 1 1089 623 330 49 39 chr1 66163610 66163894 -131031538 + B4 SINE B4 4 290 -2 1 1089 186 103 0 0 chr1 66163901 66163930 -131031502 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 1089 872 19 9 0 chr1 66163941 66164047 -131031385 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 1 1089 434 274 53 70 chr1 66164081 66164195 -131031237 + RSINE1 SINE B4 46 157 -8 1 1089 2114 191 25 8 chr1 66164312 66164714 -131030718 - MTD LTR MaLR -8 411 3 1 1089 186 43 0 0 chr1 66165468 66165491 -131029941 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1089 1182 48 0 0 chr1 66165491 66165638 -131029794 - B1_Mus2 SINE Alu 0 147 1 2 1089 561 345 66 39 chr1 66165638 66165924 -131029508 - RMER15 LTR ERVL -36 539 246 2 1089 457 300 62 45 chr1 66167131 66167309 -131028123 + B3A SINE B2 2 182 -16 2 1089 2884 79 74 0 chr1 66167432 66167824 -131027608 - BGLII LTR ERVK 0 421 1 2 1089 241 238 81 35 chr1 66168132 66168219 -131027213 - RLTR15 LTR ERVK -73 286 196 2 1089 370 244 0 89 chr1 66169578 66169668 -131025764 - RSINE1 SINE B4 0 165 84 2 1089 328 380 76 17 chr1 66169821 66170059 -131025373 - L1ME3B LINE L1 -176 6064 5813 2 1089 1289 256 184 20 chr1 66170292 66170889 -131024543 + Lx9 LINE L1 6823 7517 -127 2 1089 261 0 0 0 chr1 66170902 66170931 -131024501 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1089 22 0 0 0 chr1 66172620 66172642 -131022790 + AT_rich Low_complexity Low_complexity 1 22 0 2 1089 561 248 98 4 chr1 66172679 66172914 -131022518 + Kanga1 DNA Tc2 1488 1744 -1 2 1089 771 309 98 10 chr1 66172982 66173289 -131022143 - ORR1E LTR MaLR -4 355 22 2 1089 589 81 9 0 chr1 66174043 66174132 -131021300 - Lx3_Mus LINE L1 -167 6806 6713 2 1089 219 36 0 0 chr1 66174186 66174214 -131021218 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1089 498 257 0 41 chr1 66174543 66174689 -131020743 - Lx9 LINE L1 -385 7259 7120 2 1089 4814 82 30 8 chr1 66174686 66175353 -131020079 - L1_Mur1 LINE L1 -15 5871 5190 2 1089 385 331 6 24 chr1 66175354 66175524 -131019908 + L1MD3 LINE L1 7317 7483 -512 2 1089 261 167 0 0 chr1 66175529 66175583 -131019849 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1089 345 287 23 173 chr1 66175739 66176085 -131019347 + L1MD3 LINE L1 7659 7952 -43 2 1089 441 0 0 0 chr1 66176735 66176784 -131018648 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1089 204 309 102 51 chr1 66176943 66177100 -131018332 + L4 LINE RTE 1271 1435 -594 2 1089 200 132 0 26 chr1 66177145 66177184 -131018248 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1089 313 297 181 0 chr1 66177217 66177355 -131018077 - RSINE1 SINE B4 0 165 3 2 1089 960 321 32 54 chr1 66178138 66178543 -131016889 + Lx8 LINE L1 6238 6633 -840 2 1089 906 32 16 8 chr1 66178808 66178935 -131016497 + (TG)n Simple_repeat Simple_repeat 1 128 0 2 1089 281 303 0 0 chr1 66178949 66179015 -131016417 - ID4_ SINE ID -14 69 4 2 1089 268 354 152 8 chr1 66179050 66179233 -131016199 + MIR SINE MIR 22 216 -46 2 1089 357 270 0 0 chr1 66180304 66180378 -131015054 + ID4_ SINE ID 4 77 -6 2 1089 479 115 30 30 chr1 66180455 66180589 -131014843 + (TCTCTG)n Simple_repeat Simple_repeat 3 136 0 2 1089 263 71 24 0 chr1 66181989 66182031 -131013401 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1089 571 291 88 6 chr1 66182086 66182245 -131013187 + B3A SINE B2 5 176 -22 2 1089 1532 225 35 40 chr1 66182308 66182683 -131012749 + Lx9 LINE L1 7097 7469 -175 2 1089 278 196 0 0 chr1 66184117 66184168 -131011264 + RMER30 DNA MER1_type 103 153 -49 2 1089 21 36 0 0 chr1 66184184 66184212 -131011220 + AT_rich Low_complexity Low_complexity 1 28 0 2 1089 338 109 0 0 chr1 66184311 66184357 -131011075 + HAL1-3A_ME LINE L1 1977 2022 -836 2 1089 213 293 48 72 chr1 66184945 66185070 -131010362 + MIR SINE MIR 59 180 -82 2 1089 440 255 115 47 chr1 66186045 66186193 -131009239 - RSINE1 SINE B4 0 165 8 2 1089 252 86 0 0 chr1 66186333 66186368 -131009064 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1089 27 29 0 0 chr1 66186392 66186426 -131009006 + AT_rich Low_complexity Low_complexity 1 34 0 2 1089 593 284 7 0 chr1 66186443 66186598 -131008834 - RSINE1 SINE B4 -7 158 3 2 1089 636 294 23 28 chr1 66188665 66188882 -131006550 - B3 SINE B2 0 216 1 2 1089 21 36 0 0 chr1 66189292 66189320 -131006112 + AT_rich Low_complexity Low_complexity 1 28 0 2 1089 2523 83 3 0 chr1 66189682 66190008 -131005424 + ORR1A2 LTR MaLR 1 327 0 2 1089 251 246 54 14 chr1 66191045 66191119 -131004313 - MTEa LTR MaLR -31 348 272 2 1090 428 0 19 0 chr1 66192083 66192135 -131003297 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1090 2401 128 96 27 chr1 66193084 66193492 -131001940 + Lx4A LINE L1 6382 6817 -241 2 1090 1753 215 26 3 chr1 66194094 66194444 -131000988 + ORR1D1 LTR MaLR 1 358 -16 2 1090 213 246 43 14 chr1 66195153 66195223 -131000209 + CT-rich Low_complexity Low_complexity 3 74 0 2 1090 331 325 70 56 chr1 66196422 66196637 -130998795 + MIR SINE MIR 35 252 -10 2 1090 331 258 44 22 chr1 66197900 66197991 -130997441 - PB1D10 SINE Alu -3 114 22 2 1090 1035 272 69 40 chr1 66198667 66198771 -130996661 - Lx8 LINE L1 -200 7273 7170 2 1090 3652 106 47 7 chr1 66198771 66199320 -130996112 + Lx LINE L1 6072 6642 -12 2 1090 248 49 0 47 chr1 66199321 66199364 -130996068 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 2 1090 1035 314 176 19 chr1 66199364 66199979 -130995453 - Lx8 LINE L1 -304 7169 6453 2 1090 210 387 27 9 chr1 66200287 66200399 -130995033 + L2 LINE L2 2695 2808 -611 2 1090 2386 249 100 52 chr1 66200585 66200758 -130994674 - Lx6 LINE L1 -2 7458 7319 2 1090 3021 55 0 0 chr1 66200758 66201143 -130994289 + L1Md_F2 LINE L1 6198 6582 0 2 1090 2386 249 100 52 chr1 66201143 66201752 -130993680 - Lx6 LINE L1 -142 7318 6639 2 1090 465 19 0 0 chr1 66202094 66202148 -130993284 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1090 306 0 0 0 chr1 66202148 66202181 -130993251 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1090 210 320 69 49 chr1 66202325 66202427 -130993005 - L2 LINE L2 -952 2467 2364 2 1090 387 0 0 0 chr1 66202434 66202477 -130992955 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1090 221 307 0 51 chr1 66205081 66205160 -130990272 - L4 LINE RTE -134 1895 1821 2 1090 395 280 175 0 chr1 66206185 66206328 -130989104 + B3A SINE B2 1 168 -30 2 1090 225 200 0 0 chr1 66206354 66206399 -130989033 - MLT2B2 LTR ERVL 0 562 518 2 1090 464 326 70 83 chr1 66206499 66206800 -130988632 - MT2A LTR ERVL -191 342 46 2 1090 30 45 0 0 chr1 66207962 66208006 -130987426 + AT_rich Low_complexity Low_complexity 1 44 0 2 1090 820 241 62 5 chr1 66208106 66208298 -130987134 - B3 SINE B2 -11 205 3 2 1090 702 308 91 8 chr1 66208503 66208755 -130986677 - RMER15 LTR ERVL -15 560 288 2 1090 441 235 13 143 chr1 66208802 66208956 -130986476 - RMER15 LTR ERVL -441 134 1 2 1090 681 183 94 33 chr1 66209464 66209645 -130985787 - B2_Mm2 SINE B2 -2 193 2 2 1090 477 0 0 0 chr1 66210638 66210691 -130984741 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1090 22 0 0 0 chr1 66210787 66210809 -130984623 + AT_rich Low_complexity Low_complexity 1 22 0 2 1090 344 296 124 133 chr1 66212560 66212914 -130982518 + MLT1A LTR MaLR 1 351 -23 2 1090 202 293 26 13 chr1 66212915 66212991 -130982441 + GA-rich Low_complexity Low_complexity 1 77 0 2 1090 223 205 25 25 chr1 66213468 66213548 -130981884 + A-rich Low_complexity Low_complexity 2 81 0 2 1090 274 330 34 0 chr1 66213660 66213778 -130981654 + Lx8 LINE L1 6601 6722 -751 2 1090 423 272 94 6 chr1 66213841 66214011 -130981421 + L1MB7 LINE L1 5854 6038 -146 2 1090 534 70 0 0 chr1 66214012 66214083 -130981349 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1090 722 274 42 76 chr1 66214097 66214334 -130981098 - B4A SINE B4 -20 272 44 2 1090 2134 193 27 17 chr1 66214401 66214813 -130980619 + MTC LTR MaLR 6 421 0 2 1090 228 236 62 18 chr1 66214813 66214925 -130980507 + L1MD LINE L1 2338 2454 -3692 2 1090 491 198 135 0 chr1 66215224 66215335 -130980097 + B1_Mus1 SINE Alu 21 146 -2 2 1090 443 337 69 20 chr1 66215478 66216105 -130979327 - L1ME1 LINE L1 -184 5995 5338 2 1090 372 287 107 40 chr1 66216196 66216421 -130979011 - L1ME1 LINE L1 -862 5284 5045 2 1090 28 0 0 0 chr1 66216532 66216560 -130978872 + AT_rich Low_complexity Low_complexity 1 28 0 2 1090 442 335 108 25 chr1 66216710 66217025 -130978407 - MLT2B2 LTR ERVL 0 515 175 2 1090 1156 68 0 0 chr1 66217207 66217353 -130978079 + B1_Mus2 SINE Alu 2 147 0 2 1090 218 130 65 0 chr1 66217355 66217401 -130978031 + A-rich Low_complexity Low_complexity 2 50 0 2 1090 356 313 8 34 chr1 66217580 66217699 -130977733 - L1ME1 LINE L1 -5296 840 725 2 1090 1256 267 42 77 chr1 66217775 66218375 -130977057 - L1_Rod LINE L1 -1950 3897 3319 2 1090 260 224 0 0 chr1 66218385 66218443 -130976989 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1090 243 61 0 0 chr1 66218476 66218509 -130976923 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1090 2141 295 84 11 chr1 66218518 66219052 -130976380 + Lx9 LINE L1 6362 6922 -722 2 1090 1224 168 250 15 chr1 66219052 66219226 -130976206 - RMER17C LTR ERVK 0 410 186 2 1090 326 23 23 0 chr1 66219226 66219269 -130976163 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1090 1224 168 250 15 chr1 66219269 66219426 -130976006 - RMER17C LTR ERVK -225 185 2 2 1090 2141 295 84 11 chr1 66219426 66219747 -130975685 + Lx9 LINE L1 6923 7280 -364 2 1090 219 280 120 0 chr1 66220563 66220638 -130974794 + MIR3 SINE MIR 115 198 -10 2 1090 690 262 22 34 chr1 66220822 66221016 -130974416 - B3A SINE B2 -8 187 4 2 1090 207 250 62 0 chr1 66221182 66221246 -130974186 + L2a LINE L2 3355 3422 -4 2 1090 234 229 0 54 chr1 66221770 66221881 -130973551 + (CGGGG)n Simple_repeat Simple_repeat 2 106 0 2 1090 23 0 0 0 chr1 66222450 66222473 -130972959 + AT_rich Low_complexity Low_complexity 1 23 0 2 1090 717 23 0 0 chr1 66224323 66224410 -130971022 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 1090 654 79 0 0 chr1 66225961 66226050 -130969382 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 2 1090 325 300 52 91 chr1 66226103 66226257 -130969175 - B1F1 SINE Alu -1 148 1 2 1090 3313 228 52 45 chr1 66226279 66226964 -130968468 - Lx6 LINE L1 -26 7434 6760 2 1090 471 63 0 0 chr1 66226964 66227027 -130968405 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1090 3313 228 52 45 chr1 66227027 66227163 -130968269 - Lx6 LINE L1 -701 6759 6608 2 1090 3012 156 7 11 chr1 66227152 66227750 -130967682 - Lx6 LINE L1 -1532 5928 5331 2 1090 4231 209 82 21 chr1 66227876 66228969 -130966463 - Lx5 LINE L1 0 7050 5885 3 1090 231 299 84 93 chr1 66229276 66229383 -130966049 - B4A SINE B4 -14 278 173 3 1090 364 323 30 0 chr1 66229404 66229503 -130965929 - B4A SINE B4 -189 103 2 3 1090 708 163 0 0 chr1 66229555 66229571 -130965861 + polypyrimidine Low_complexity Low_complexity 126 141 0 3 1090 1110 130 0 0 chr1 66229571 66229748 -130965684 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 3 1090 708 163 0 0 chr1 66229748 66229872 -130965560 + CT-rich Low_complexity Low_complexity 2 125 0 3 1090 848 182 0 0 chr1 66229872 66230015 -130965417 - B1_Mur4 SINE Alu -7 143 1 3 1090 21 0 0 0 chr1 66231282 66231303 -130964129 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 205 268 0 0 chr1 66231460 66231501 -130963931 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1090 1321 35 51 23 chr1 66231511 66231686 -130963746 - B2_Mm2 SINE B2 -15 180 1 3 1090 21 0 0 0 chr1 66231688 66231709 -130963723 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 385 284 39 16 chr1 66231709 66231838 -130963594 + MER2 DNA MER2_type 94 225 -120 3 1090 392 231 284 0 chr1 66232727 66232896 -130962536 + ID_B1 SINE B4 3 219 -5 3 1090 180 310 98 20 chr1 66234520 66234622 -130960810 - L2a LINE L2 -43 3383 3274 3 1090 531 69 0 0 chr1 66234646 66234718 -130960714 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1090 234 91 0 0 chr1 66234718 66234750 -130960682 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1090 387 41 0 0 chr1 66235623 66235672 -130959760 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1090 3084 79 53 2 chr1 66236566 66236999 -130958433 + Lx3_Mus LINE L1 6538 6992 -17 3 1090 512 118 300 0 chr1 66237412 66237522 -130957910 - URR1B DNA MER1_type 0 225 83 3 1090 183 42 0 0 chr1 66238517 66238541 -130956891 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1090 941 123 0 6 chr1 66238541 66238711 -130956721 + (GA)n Simple_repeat Simple_repeat 1 170 0 3 1090 246 106 64 0 chr1 66239544 66239591 -130955841 + ID SINE ID 5 54 -170 3 1090 1647 192 119 6 chr1 66239585 66239920 -130955512 + RMER15 LTR ERVL 203 575 0 3 1090 237 140 0 0 chr1 66240683 66240708 -130954724 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1090 1209 41 0 13 chr1 66240708 66240857 -130954575 - B1_Mm SINE Alu 0 147 1 3 1090 237 140 0 0 chr1 66240857 66240881 -130954551 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1090 502 250 0 51 chr1 66241187 66241305 -130954127 + ID_B1 SINE B4 113 224 0 3 1090 217 309 0 0 chr1 66242910 66242965 -130952467 + L2c LINE L2 2349 2403 -1016 3 1090 191 289 39 0 chr1 66243562 66243614 -130951818 + L2c LINE L2 3293 3346 -41 3 1090 878 188 0 7 chr1 66244971 66245116 -130950316 + B1_Mur3 SINE Alu 1 144 -5 3 1090 44 70 0 0 chr1 66245145 66245231 -130950201 + AT_rich Low_complexity Low_complexity 1 86 0 3 1090 376 259 35 117 chr1 66246922 66247119 -130948313 - B3A SINE B2 -16 182 2 3 1090 280 293 40 0 chr1 66248203 66248276 -130947156 + MER5A DNA MER1_type 2 77 -112 3 1090 468 296 131 7 chr1 66248276 66248429 -130947003 + B3A SINE B2 2 173 -25 3 1090 390 21 0 0 chr1 66248436 66248483 -130946949 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1090 302 344 170 48 chr1 66249010 66249087 -130946345 - MLT1D LTR MaLR 0 505 415 3 1090 544 47 0 23 chr1 66249087 66249174 -130946258 + L1Md_F2 LINE L1 6498 6582 0 3 1090 302 344 170 48 chr1 66249174 66249508 -130945924 - MLT1D LTR MaLR -91 414 44 3 1090 32 26 0 0 chr1 66250220 66250259 -130945173 + AT_rich Low_complexity Low_complexity 1 39 0 3 1090 1115 89 0 0 chr1 66250435 66250581 -130944851 - B1_Mus1 SINE Alu 0 148 3 3 1090 805 53 110 155 chr1 66250807 66250962 -130944470 + B1_Mus1 SINE Alu 1 148 0 3 1090 234 294 67 0 chr1 66251245 66251364 -130944068 - Charlie7 DNA MER1_type -2425 187 61 3 1090 438 20 0 0 chr1 66251490 66251541 -130943891 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 3 1090 24 0 0 0 chr1 66251542 66251566 -130943866 + AT_rich Low_complexity Low_complexity 1 24 0 3 1090 232 393 9 9 chr1 66253957 66254065 -130941367 - ID_B1 SINE B4 -8 216 109 3 1090 279 54 0 0 chr1 66254137 66254174 -130941258 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1090 1621 246 6 3 chr1 66254425 66254751 -130940681 + MTD LTR MaLR 68 394 -25 3 1090 783 191 62 51 chr1 66254753 66254864 -130940568 - Lx9 LINE L1 0 7644 7531 3 1090 459 0 0 0 chr1 66254864 66254915 -130940517 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 3 1090 783 191 62 51 chr1 66254915 66255078 -130940354 - Lx9 LINE L1 -114 7530 7367 3 1090 230 205 0 0 chr1 66255108 66255147 -130940285 + ORR1B2 LTR MaLR 321 359 -8 3 1090 285 233 46 55 chr1 66255368 66255477 -130939955 - MLT1A LTR MaLR 0 374 267 3 1090 26 30 0 0 chr1 66256044 66256077 -130939355 + AT_rich Low_complexity Low_complexity 1 33 0 3 1090 474 88 0 0 chr1 66256756 66256824 -130938608 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1090 1391 215 67 5 chr1 66257038 66257403 -130938029 - MTD LTR MaLR -6 394 1 3 1090 222 37 0 0 chr1 66258638 66258665 -130936767 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3 1090 6522 55 1 1 chr1 66259231 66260204 -130935228 - L1Md_F2 LINE L1 -583 5999 5027 3 1090 3486 71 62 19 chr1 66260204 66260691 -130934741 + L1Md_F2 LINE L1 6075 6582 0 3 1090 587 200 8 25 chr1 66260846 66260964 -130934468 - B1_Mur3 SINE Alu -1 148 33 3 1090 884 179 129 21 chr1 66262013 66262192 -130933240 + B3 SINE B2 2 202 -14 3 1090 186 43 0 0 chr1 66262192 66262215 -130933217 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1090 884 179 129 21 chr1 66262215 66262229 -130933203 + B3 SINE B2 203 216 0 3 1090 562 264 56 0 chr1 66262600 66262725 -130932707 + RSINE1 SINE B4 16 147 -18 3 1090 577 202 35 9 chr1 66262712 66262827 -130932605 + B1_Mus1 SINE Alu 10 127 -21 3 1090 279 329 51 64 chr1 66262933 66263089 -130932343 - RSINE1 SINE B4 -11 154 1 3 1090 218 29 59 0 chr1 66263832 66263866 -130931566 + (CATA)n Simple_repeat Simple_repeat 1 36 0 3 1090 30 27 0 0 chr1 66264171 66264208 -130931224 + AT_rich Low_complexity Low_complexity 1 37 0 3 1090 602 258 39 29 chr1 66264412 66264616 -130930816 + B3 SINE B2 1 206 -10 3 1090 262 0 53 0 chr1 66264872 66264910 -130930522 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1090 249 33 0 0 chr1 66265023 66265053 -130930379 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1090 204 268 36 0 chr1 66266101 66266157 -130929275 + MIR SINE MIR 87 144 -118 3 1090 378 42 0 0 chr1 66266323 66266371 -130929061 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1090 274 91 18 18 chr1 66266456 66266512 -130928920 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 1090 279 216 28 56 chr1 66267560 66267668 -130927764 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 3 1090 234 62 0 0 chr1 66267794 66267826 -130927606 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1090 414 39 0 0 chr1 66267839 66267891 -130927541 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1090 543 210 0 10 chr1 66269500 66269601 -130925831 - B3 SINE B2 -116 100 1 3 1090 207 0 0 0 chr1 66270295 66270318 -130925114 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1090 28 29 0 0 chr1 66270514 66270549 -130924883 + AT_rich Low_complexity Low_complexity 1 35 0 3 1090 220 245 19 0 chr1 66270672 66270778 -130924654 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 3 1090 603 204 6 26 chr1 66270878 66271034 -130924398 - Lx9 LINE L1 -5 7639 7487 3 1090 223 338 0 0 chr1 66271733 66271804 -130923628 + ID SINE ID 7 77 -147 3 1090 332 313 35 0 chr1 66272219 66272334 -130923098 + PB1D7 SINE Alu 2 120 0 3 1090 208 238 0 0 chr1 66272355 66272397 -130923035 + (CATG)n Simple_repeat Simple_repeat 3 44 0 3 1090 290 164 0 0 chr1 66272699 66272754 -130922678 + Lx7 LINE L1 7642 7696 0 3 1090 256 324 14 0 chr1 66272833 66272924 -130922508 + ID2 SINE ID 12 103 -49 3 1090 549 0 0 0 chr1 66273298 66273359 -130922073 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1090 21 0 0 0 chr1 66276853 66276874 -130918558 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 21 0 0 0 chr1 66276918 66276939 -130918493 + AT_rich Low_complexity Low_complexity 1 21 0 3 1090 8503 10 0 0 chr1 66277306 66278302 -130917130 - L1Md_A LINE L1 0 6582 5587 3 1090 421 235 72 27 chr1 66278306 66278440 -130916992 - ORR1E LTR MaLR -1 369 229 3 1090 1592 161 19 143 chr1 66278443 66278862 -130916570 - ORR1B2 LTR MaLR 0 367 1 3 1090 232 310 0 57 chr1 66278999 66279105 -130916327 - LTR16A LTR ERVL -53 398 299 3 1090 704 205 0 45 chr1 66279517 66279650 -130915782 + B1_Mus1 SINE Alu 1 127 -21 3 1090 234 0 0 0 chr1 66279668 66279694 -130915738 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 3 1090 3655 204 30 17 chr1 66279935 66280698 -130914734 - Lx5 LINE L1 -12 7038 6266 3 1090 665 285 16 53 chr1 66280783 66280972 -130914460 - B3A SINE B2 -16 182 1 3 1090 260 339 81 16 chr1 66281012 66281135 -130914297 - MIRb SINE MIR -19 249 119 3 1090 418 345 35 15 chr1 66281241 66281397 -130914035 + B3 SINE B2 2 155 -61 3 1090 549 0 0 0 chr1 66281397 66281458 -130913974 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1090 418 345 35 15 chr1 66281458 66281498 -130913934 + B3 SINE B2 156 201 -15 3 1090 204 158 0 26 chr1 66282719 66282758 -130912674 + CT-rich Low_complexity Low_complexity 2 39 0 3 1090 806 263 98 64 chr1 66282843 66283107 -130912325 - B4 SINE B4 -14 278 6 3 1090 2418 304 78 19 chr1 66284120 66285200 -130910232 - Lx9 LINE L1 -175 7469 6326 3 1090 1182 118 0 6 chr1 66285920 66286090 -130909342 - B2_Mm2 SINE B2 -25 170 2 3 1090 540 166 6 60 chr1 66286542 66286709 -130908723 - Lx9 LINE L1 -7 7637 7480 3 1090 240 279 163 0 chr1 66286981 66287067 -130908365 + B1F SINE Alu 50 149 0 4 1090 3914 82 10 2 chr1 66287134 66287657 -130907775 - L1_Mus1 LINE L1 0 6567 6041 4 1090 2964 81 18 5 chr1 66287659 66288105 -130907327 + L1_Mm LINE L1 3226 3677 -2206 4 1090 4121 126 35 3 chr1 66288150 66288786 -130906646 - Lx LINE L1 -1 6653 5998 4 1090 7334 88 21 15 chr1 66288786 66289943 -130905489 - L1Md_F2 LINE L1 -110 6887 5630 4 1090 2132 124 37 0 chr1 66289938 66290286 -130905146 + L1_Mm LINE L1 5408 5768 -115 4 1090 406 188 21 0 chr1 66290405 66290501 -130904931 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 1090 427 307 39 19 chr1 66290628 66290731 -130904701 + B4 SINE B4 20 124 -168 4 1090 204 40 0 0 chr1 66290913 66290938 -130904494 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1090 285 176 0 0 chr1 66290951 66291025 -130904407 + (CAGA)n Simple_repeat Simple_repeat 2 75 0 4 1090 705 24 0 0 chr1 66291039 66291122 -130904310 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1090 24 0 0 0 chr1 66291170 66291194 -130904238 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 24 0 0 0 chr1 66292533 66292557 -130902875 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 233 309 16 16 chr1 66292563 66292688 -130902744 + (TATATG)n Simple_repeat Simple_repeat 6 130 0 4 1090 706 247 58 16 chr1 66293145 66293334 -130902098 + B3A SINE B2 2 198 0 4 1090 24 0 0 0 chr1 66293384 66293408 -130902024 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 216 229 16 16 chr1 66294621 66294683 -130900749 + (TATG)n Simple_repeat Simple_repeat 2 63 0 4 1090 243 0 0 0 chr1 66294745 66294772 -130900660 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1090 302 255 163 0 chr1 66294920 66295061 -130900371 - L1M3 LINE L1 -621 5691 5528 4 1090 455 284 181 38 chr1 66295069 66295362 -130900070 - ORR1E LTR MaLR 0 359 25 4 1090 646 279 92 7 chr1 66295397 66295971 -130899461 - L1M3 LINE L1 -787 5525 4883 4 1090 1022 94 20 7 chr1 66296769 66296919 -130898513 - B2_Mm2 SINE B2 -43 152 1 4 1090 844 243 61 17 chr1 66297541 66297771 -130897661 - MLT1A0 LTR MaLR 0 365 126 4 1090 504 86 0 0 chr1 66299176 66299246 -130896186 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1090 21 0 0 0 chr1 66299339 66299360 -130896072 + AT_rich Low_complexity Low_complexity 1 21 0 4 1090 189 74 0 0 chr1 66299597 66299624 -130895808 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4 1090 436 373 46 19 chr1 66299644 66300054 -130895378 - Lx8 LINE L1 -50 7423 7003 4 1090 1623 314 47 15 chr1 66300062 66300789 -130894643 - Lx8 LINE L1 -591 6882 6133 4 1090 570 237 34 0 chr1 66301397 66301515 -130893917 - ID_B1 SINE B4 -2 222 101 4 1090 438 317 155 8 chr1 66302218 66302469 -130892963 - B4 SINE B4 -2 290 3 4 1090 22 0 0 0 chr1 66302946 66302968 -130892464 + AT_rich Low_complexity Low_complexity 1 22 0 4 1090 3381 231 68 13 chr1 66303064 66303964 -130891468 - RCHARR1 DNA MER1_type -1 973 25 4 1090 252 137 0 0 chr1 66304052 66304103 -130891329 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1090 3263 51 58 0 chr1 66304191 66304392 -130891040 - RLTR10C LTR ERVK 0 436 233 4 1090 270 0 0 0 chr1 66304392 66304422 -130891010 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1090 3263 51 58 0 chr1 66304422 66304632 -130890800 - RLTR10C LTR ERVK -204 232 2 4 1090 189 262 274 0 chr1 66305396 66305480 -130889952 + L2 LINE L2 2216 2322 -1097 4 1090 376 339 105 18 chr1 66305900 66306071 -130889361 - B4A SINE B4 -49 243 58 4 1090 540 0 0 0 chr1 66306156 66306216 -130889216 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 4 1090 465 127 0 0 chr1 66306724 66306803 -130888629 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 1090 1056 111 0 17 chr1 66307162 66307701 -130887731 + (TCC)n Simple_repeat Simple_repeat 1 529 0 4 1090 464 281 32 16 chr1 66307750 66307873 -130887559 + RSINE1 SINE B4 3 127 -38 4 1090 24 0 0 0 chr1 66308836 66308860 -130886572 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 317 179 0 25 chr1 66311539 66311619 -130883813 + (TATG)n Simple_repeat Simple_repeat 2 79 0 4 1090 684 228 109 106 chr1 66311880 66312248 -130883184 - MER67C LTR ERV1 -4 707 339 4 1090 606 14 0 0 chr1 66312266 66312337 -130883095 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1090 672 265 27 0 chr1 66312338 66312485 -130882947 - B3A SINE B2 -46 152 2 4 1090 27 0 0 0 chr1 66313156 66313183 -130882249 + AT_rich Low_complexity Low_complexity 1 27 0 4 1090 378 0 0 0 chr1 66313647 66313689 -130881743 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1090 3514 32 9 42 chr1 66314024 66314479 -130880953 + L1Md_F2 LINE L1 6141 6580 -2 4 1090 217 275 14 68 chr1 66314753 66314827 -130880605 - MIRm SINE MIR 0 276 207 4 1090 535 315 126 11 chr1 66315089 66315272 -130880160 + B3 SINE B2 6 209 -7 4 1090 198 143 0 0 chr1 66315290 66315325 -130880107 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1090 518 216 107 11 chr1 66315958 66316136 -130879296 + Lx9 LINE L1 7426 7620 -24 4 1090 250 271 32 48 chr1 66316136 66316198 -130879234 + B4A SINE B4 210 270 -22 4 136 37285 55 2 23 chr1 66317647 66324312 -130871120 - L1Md_T LINE L1 0 6582 99 4 1091 30 0 0 0 chr1 66325124 66325154 -130870278 + AT_rich Low_complexity Low_complexity 1 30 0 4 1091 325 318 128 26 chr1 66325508 66325773 -130869659 + Lx8 LINE L1 7175 7466 -7 4 1091 300 154 0 0 chr1 66326552 66326604 -130868828 + T-rich Low_complexity Low_complexity 1 52 0 4 1091 205 86 29 0 chr1 66326734 66326769 -130868663 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1091 211 288 0 83 chr1 66327446 66327488 -130867944 + MIRm SINE MIR 211 251 -25 4 1091 2043 213 5 12 chr1 66327488 66327910 -130867522 - MTC LTR MaLR -2 419 1 4 1091 211 288 0 83 chr1 66327910 66327939 -130867493 + MIRm SINE MIR 252 276 0 4 1091 366 306 56 19 chr1 66328224 66328384 -130867048 + MER5A DNA MER1_type 1 166 -23 4 1091 211 161 18 18 chr1 66328646 66328703 -130866729 + CT-rich Low_complexity Low_complexity 4 60 0 4 1091 21 0 0 0 chr1 66329001 66329022 -130866410 + AT_rich Low_complexity Low_complexity 1 21 0 4 1091 1102 192 56 16 chr1 66329022 66329271 -130866161 - Lx3C LINE L1 -2 6974 6716 4 1091 215 372 88 0 chr1 66329885 66330022 -130865410 - MIRb SINE MIR -39 229 81 4 1091 518 195 105 48 chr1 66331400 66331524 -130863908 + B1_Mur2 SINE Alu 7 137 -12 4 1091 250 318 159 15 chr1 66332241 66332442 -130862990 - MIR SINE MIR 0 262 33 4 1091 580 272 94 28 chr1 66332950 66333237 -130862195 - L1MB8 LINE L1 -40 6138 5833 4 1091 24 85 0 0 chr1 66333731 66333790 -130861642 + AT_rich Low_complexity Low_complexity 1 59 0 4 1091 557 344 55 47 chr1 66334504 66334757 -130860675 + MTEa LTR MaLR 9 263 -116 4 1091 1240 164 14 5 chr1 66337602 66337823 -130857609 + URR1B DNA MER1_type 1 223 -2 4 1091 186 43 0 0 chr1 66338665 66338688 -130856744 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1091 522 0 0 0 chr1 66338688 66338745 -130856687 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1091 5770 178 25 8 chr1 66339658 66340752 -130854680 - L1_Mur3 LINE L1 -35 5845 4734 4 1091 315 281 121 30 chr1 66340963 66341062 -130854370 + RSINE1 SINE B4 4 111 -54 4 1091 245 325 35 60 chr1 66341253 66341453 -130853979 - RLTR25A LTR ERVK -131 972 778 4 1091 841 293 56 42 chr1 66342811 66343099 -130852333 + B4A SINE B4 1 292 0 4 1091 1180 55 0 0 chr1 66343737 66343882 -130851550 + B1_Mus2 SINE Alu 2 146 -1 4 1091 232 236 14 14 chr1 66344092 66344165 -130851267 - L1MA4 LINE L1 -17 6283 6211 4 1091 312 299 13 0 chr1 66344478 66344555 -130850877 + PB1D10 SINE Alu 13 90 -27 4 1091 22 56 0 0 chr1 66345083 66345119 -130850313 + AT_rich Low_complexity Low_complexity 1 36 0 4 1091 303 257 113 52 chr1 66346023 66346138 -130849294 - MER63B DNA AcHobo -39 397 276 4 1091 1791 194 64 36 chr1 66346405 66346844 -130848588 - Lx9 LINE L1 -44 7600 7150 4 1091 416 145 0 0 chr1 66346845 66346914 -130848518 + Lx9 LINE L1 6978 7046 -598 4 1091 324 47 0 86 chr1 66349530 66349600 -130845832 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 4 1091 354 80 0 0 chr1 66350760 66350810 -130844622 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1091 3979 65 20 16 chr1 66351468 66352017 -130843415 - L1_Mus3 LINE L1 -2 6636 6086 4 1091 21 57 0 0 chr1 66352207 66352242 -130843190 + AT_rich Low_complexity Low_complexity 1 35 0 4 1091 867 270 122 20 chr1 66352752 66353103 -130842329 - RMER5 LTR ERV1 -78 456 70 4 1091 805 123 25 19 chr1 66353104 66353262 -130842170 - Lx LINE L1 0 6654 6496 4 1091 183 365 76 38 chr1 66354344 66354475 -130840957 + MER5A DNA MER1_type 6 141 -48 4 1091 306 0 0 0 chr1 66356136 66356170 -130839262 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1091 25 0 0 0 chr1 66356277 66356302 -130839130 + AT_rich Low_complexity Low_complexity 1 25 0 4 1091 464 337 60 29 chr1 66356413 66356694 -130838738 - B4A SINE B4 0 292 3 4 1091 835 224 40 17 chr1 66356748 66356921 -130838511 - B3 SINE B2 -38 178 2 4 1091 558 82 0 0 chr1 66357162 66357247 -130838185 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 4 1091 1594 238 70 22 chr1 66357440 66357696 -130837736 + MTD LTR MaLR 1 253 -166 4 1091 887 181 166 0 chr1 66357696 66357889 -130837543 + URR1B DNA MER1_type 1 225 0 4 1091 1594 238 70 22 chr1 66357889 66358032 -130837400 + MTD LTR MaLR 254 418 -1 4 1091 24 32 0 0 chr1 66358053 66358084 -130837348 + AT_rich Low_complexity Low_complexity 1 31 0 4 1091 183 241 90 130 chr1 66358255 66358355 -130837077 - L3 LINE CR1 -3508 981 886 4 1091 409 330 78 31 chr1 66359226 66359421 -130836011 - L2a LINE L2 -11 3415 3188 4 1091 390 231 44 0 chr1 66360442 66360533 -130834899 + PB1D10 SINE Alu 4 98 -19 4 1091 44 0 0 0 chr1 66360566 66360610 -130834822 + AT_rich Low_complexity Low_complexity 1 44 0 5 1091 486 298 0 79 chr1 66360610 66360774 -130834658 + RSINE1 SINE B4 5 155 -10 5 1091 252 0 0 0 chr1 66360792 66360820 -130834612 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1091 205 211 0 17 chr1 66360832 66360890 -130834542 + A-rich Low_complexity Low_complexity 1 57 0 5 1091 241 325 48 38 chr1 66361206 66361312 -130834120 + MIRc SINE MIR 57 166 -110 5 1091 326 277 247 24 chr1 66362143 66362563 -130832869 - L1ME2z LINE L1 -428 6016 5513 5 1091 1733 75 15 27 chr1 66363025 66363285 -130832147 - L1_Mus2 LINE L1 -2 6564 6308 5 1091 634 50 32 32 chr1 66363329 66363453 -130831979 + (TTCTC)n Simple_repeat Simple_repeat 1 124 0 5 1091 522 0 0 0 chr1 66363574 66363632 -130831800 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1091 340 91 22 33 chr1 66363701 66363792 -130831640 + (TTTG)n Simple_repeat Simple_repeat 1 90 0 5 1091 1160 62 7 0 chr1 66363792 66363937 -130831495 - B1_Mus1 SINE Alu -1 147 2 5 1091 268 294 83 14 chr1 66364432 66364577 -130830855 - L1MA7 LINE L1 -306 5985 5831 5 1091 304 269 73 55 chr1 66365114 66365224 -130830208 - PB1D7 SINE Alu -8 112 1 5 1091 23 0 0 0 chr1 66365288 66365311 -130830121 + AT_rich Low_complexity Low_complexity 1 23 0 5 1091 21 0 0 0 chr1 66365427 66365448 -130829984 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 1920 281 54 43 chr1 66365777 66366523 -130828909 - Lx9 LINE L1 -195 7449 6696 5 1091 378 115 0 0 chr1 66366603 66366664 -130828768 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1091 243 0 0 0 chr1 66368244 66368271 -130827161 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1091 21 36 0 0 chr1 66369434 66369462 -130825970 + AT_rich Low_complexity Low_complexity 1 28 0 5 1091 243 204 0 0 chr1 66369874 66369928 -130825504 + A-rich Low_complexity Low_complexity 1 54 0 5 1091 21 0 0 0 chr1 66370342 66370363 -130825069 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 1033 100 0 7 chr1 66370636 66370919 -130824513 + (CA)n Simple_repeat Simple_repeat 1 280 0 5 1091 24 32 0 0 chr1 66371378 66371409 -130824023 + AT_rich Low_complexity Low_complexity 1 31 0 5 1091 238 289 40 0 chr1 66371438 66371514 -130823918 - ID4_ SINE ID -4 79 1 5 1091 334 209 71 20 chr1 66371859 66371971 -130823461 + B1F SINE Alu 4 117 0 5 1091 399 303 76 0 chr1 66372090 66372222 -130823210 - MIRb SINE MIR -5 263 122 5 1091 293 47 23 0 chr1 66372432 66372475 -130822957 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1091 24 0 0 0 chr1 66372492 66372516 -130822916 + AT_rich Low_complexity Low_complexity 1 24 0 5 1091 228 35 0 0 chr1 66373424 66373453 -130821979 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1091 1285 161 9 18 chr1 66375832 66376060 -130819372 + URR1A DNA MER1_type 1 226 0 5 1091 1438 152 72 45 chr1 66376172 66376462 -130818970 - Lx4B LINE L1 0 7058 6761 5 1091 558 287 50 15 chr1 66376681 66376879 -130818553 + B3 SINE B2 1 205 -11 5 1091 297 0 0 0 chr1 66377475 66377508 -130817924 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1091 558 0 0 0 chr1 66377655 66377717 -130817715 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1091 413 36 18 0 chr1 66377717 66377771 -130817661 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1091 261 0 0 0 chr1 66378113 66378142 -130817290 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1091 201 382 74 31 chr1 66378665 66378827 -130816605 - MIRc SINE MIR -25 243 75 5 1091 603 0 0 0 chr1 66378905 66378972 -130816460 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1091 275 302 64 36 chr1 66379246 66379356 -130816076 + MIRb SINE MIR 27 139 -129 5 1091 810 47 0 0 chr1 66379754 66379861 -130815571 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1091 523 296 11 32 chr1 66379982 66380167 -130815265 - B3A SINE B2 -10 185 9 5 1091 623 364 41 38 chr1 66380447 66380738 -130814694 + MLT1J LTR MaLR 19 310 -202 5 1091 21 0 0 0 chr1 66380891 66380912 -130814520 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 1190 61 0 0 chr1 66381032 66381179 -130814253 + B1_Mm SINE Alu 1 147 0 5 1091 194 0 0 109 chr1 66381179 66381225 -130814207 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 5 1091 1946 115 23 61 chr1 66383096 66383438 -130811994 - ORR1A4 LTR MaLR 0 329 1 5 1091 491 199 234 29 chr1 66385472 66385643 -130809789 - B3 SINE B2 -10 206 1 5 1091 628 275 49 0 chr1 66386188 66386330 -130809102 + RSINE1 SINE B4 5 153 -12 5 1091 283 313 96 18 chr1 66386330 66386354 -130809078 + B2_Mm2 SINE B2 4 182 -13 5 1091 1013 140 6 0 chr1 66387147 66387325 -130808107 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 1091 28 0 0 0 chr1 66388037 66388065 -130807367 + AT_rich Low_complexity Low_complexity 1 28 0 5 1091 352 292 77 0 chr1 66388073 66388203 -130807229 + B1F SINE Alu 3 142 -7 5 1091 247 303 11 14 chr1 66388211 66388283 -130807149 + ID4_ SINE ID 3 79 -4 5 1091 930 110 0 0 chr1 66388283 66388438 -130806994 + (CA)n Simple_repeat Simple_repeat 2 156 0 5 1091 250 356 22 0 chr1 66388856 66388946 -130806486 - ORR1D2 LTR MaLR 0 370 279 5 1091 24 0 0 0 chr1 66389963 66389987 -130805445 + AT_rich Low_complexity Low_complexity 1 24 0 5 1091 763 222 82 0 chr1 66389990 66390184 -130805248 - B3 SINE B2 -5 211 2 5 1091 668 306 68 36 chr1 66390185 66390613 -130804819 - L1MB7 LINE L1 -13 6171 5693 5 1091 567 256 44 19 chr1 66391297 66391456 -130803976 + RSINE1 SINE B4 2 164 -1 5 1091 519 187 0 0 chr1 66391460 66391567 -130803865 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 1091 567 62 0 0 chr1 66394216 66394296 -130801136 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1091 353 367 58 0 chr1 66394298 66394437 -130800995 + MTEa LTR MaLR 10 156 -223 5 1091 189 323 34 80 chr1 66396882 66397057 -130798375 - L2c LINE L2 -1 3386 3220 5 1091 1191 175 118 10 chr1 66397264 66397570 -130797862 - Lx9 LINE L1 0 7644 7306 5 1091 952 146 22 38 chr1 66397650 66397835 -130797597 + B2_Mm2 SINE B2 14 195 0 5 1091 1119 237 26 37 chr1 66397886 66398158 -130797274 + Lx9 LINE L1 6310 6578 -1066 5 1091 1699 195 62 11 chr1 66398846 66399198 -130796234 - Lx9 LINE L1 -743 6901 6532 5 1091 6492 119 35 2 chr1 66399266 66400274 -130795158 + Lx3B LINE L1 5933 6973 0 5 1091 21 0 0 0 chr1 66400284 66400305 -130795127 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 339 302 148 90 chr1 66400353 66400542 -130794890 - MLT1A LTR MaLR -169 205 6 5 1091 640 270 183 38 chr1 66400768 66401030 -130794402 - RMER15 LTR ERVL 0 575 276 5 1091 192 40 0 0 chr1 66401141 66401166 -130794266 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 5 1091 558 319 25 0 chr1 66401201 66401358 -130794074 - B3A SINE B2 -36 162 2 5 1091 297 333 0 25 chr1 66401595 66401715 -130793717 + GA-rich Low_complexity Low_complexity 6 122 0 5 1091 1152 292 89 30 chr1 66402045 66402818 -130792614 + L1MA6 LINE L1 5458 6270 -21 5 1091 321 272 32 32 chr1 66404496 66404591 -130790841 + B4A SINE B4 1 95 -197 5 1091 360 240 126 104 chr1 66404590 66404725 -130790707 - ORR1D2 LTR MaLR -18 361 224 5 1091 505 306 56 64 chr1 66404753 66404823 -130790609 - ORR1D2 LTR MaLR -134 236 172 5 1091 1131 89 0 0 chr1 66404823 66405002 -130790430 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1091 505 306 56 64 chr1 66405002 66405165 -130790267 - ORR1D2 LTR MaLR -199 171 5 5 1091 588 264 52 39 chr1 66405194 66405348 -130790084 + B4A SINE B4 137 292 0 5 1091 184 270 185 32 chr1 66405841 66405998 -130789434 + MIRb SINE MIR 51 231 -37 5 1091 262 406 0 20 chr1 66406570 66406716 -130788716 - MER58A DNA MER1_type -75 149 7 5 1091 219 88 0 0 chr1 66406764 66406798 -130788634 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1091 223 294 43 99 chr1 66406991 66407009 -130788423 + B4 SINE B4 68 76 -216 5 1091 504 229 54 60 chr1 66407009 66407158 -130788274 + B1_Mur4 SINE Alu 2 149 -1 5 1091 205 195 0 0 chr1 66407159 66407200 -130788232 + A-rich Low_complexity Low_complexity 1 41 0 5 1091 567 0 0 0 chr1 66407290 66407353 -130788079 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 1091 222 333 12 85 chr1 66407756 66407838 -130787594 + ID4 SINE ID 3 78 -5 5 1091 238 269 12 37 chr1 66409138 66409219 -130786213 - MIR SINE MIR -31 231 153 5 1091 23 33 0 0 chr1 66410589 66410619 -130784813 + AT_rich Low_complexity Low_complexity 1 30 0 5 1091 180 255 38 38 chr1 66411282 66411335 -130784097 + L2c LINE L2 3293 3345 -42 5 1091 444 347 60 7 chr1 66412554 66412705 -130782727 + RSINE1 SINE B4 2 160 -5 5 1091 246 128 0 0 chr1 66412723 66412762 -130782670 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1091 264 30 0 0 chr1 66414256 66414289 -130781143 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1091 1682 160 55 58 chr1 66415324 66415649 -130779783 - MTC LTR MaLR -97 324 1 5 1091 258 56 0 0 chr1 66415828 66415864 -130779568 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1091 224 236 36 0 chr1 66417402 66417457 -130777975 + B4A SINE B4 37 93 -199 5 1091 224 383 0 12 chr1 66417754 66417836 -130777596 - ID4_ SINE ID -1 82 2 5 1091 313 270 35 124 chr1 66418596 66418765 -130776667 + L2c LINE L2 3231 3384 -3 5 1091 188 209 114 43 chr1 66420266 66420336 -130775096 + L3 LINE CR1 2043 2117 -2372 5 1091 216 0 0 0 chr1 66423262 66423286 -130772146 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1091 508 357 25 0 chr1 66423298 66423455 -130771977 + B3A SINE B2 27 187 -11 5 1091 1077 132 6 0 chr1 66423484 66423651 -130771781 + URR1A DNA MER1_type 59 226 0 5 1091 382 277 81 67 chr1 66423998 66424097 -130771335 + L1MC3 LINE L1 7484 7576 -209 6 1091 3852 128 18 0 chr1 66424097 66424667 -130770765 - MT2B2 LTR ERVL 0 584 5 6 1091 382 277 81 67 chr1 66424667 66424865 -130770567 + L1MC3 LINE L1 7577 7785 0 6 1091 562 255 0 73 chr1 66425748 66425913 -130769519 + RSINE1 SINE B4 1 153 -12 6 1091 1142 226 10 0 chr1 66427895 66428103 -130767329 - B3 SINE B2 -6 210 1 6 1091 215 276 69 0 chr1 66428435 66428493 -130766939 + ID4_ SINE ID 2 63 -20 6 1091 303 256 22 0 chr1 66428495 66428585 -130766847 + (TATG)n Simple_repeat Simple_repeat 1 92 0 6 1091 626 358 90 21 chr1 66428874 66429208 -130766224 + MER119 DNA MER1_type 27 383 -200 6 1091 691 213 7 7 chr1 66429683 66429825 -130765607 - B1F SINE Alu -7 142 1 6 1091 658 312 80 11 chr1 66431956 66432219 -130763213 + MER2 DNA MER2_type 46 326 -19 6 1091 274 0 48 24 chr1 66432863 66432905 -130762527 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 6 1091 261 75 0 0 chr1 66434446 66434486 -130760946 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1091 22 0 0 0 chr1 66434498 66434520 -130760912 + AT_rich Low_complexity Low_complexity 1 22 0 6 1091 25 0 0 0 chr1 66434671 66434696 -130760736 + AT_rich Low_complexity Low_complexity 1 25 0 6 1091 237 163 0 0 chr1 66434865 66434914 -130760518 + GA-rich Low_complexity Low_complexity 1 49 0 6 1091 648 0 0 0 chr1 66435533 66435605 -130759827 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1091 675 0 0 0 chr1 66436808 66436883 -130758549 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1091 207 0 0 0 chr1 66436883 66436905 -130758527 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1091 1019 73 6 33 chr1 66436905 66437087 -130758345 + (GTTTG)n Simple_repeat Simple_repeat 1 178 0 6 1091 263 269 14 29 chr1 66437440 66437509 -130757923 - ID4_ SINE ID -13 70 3 6 1091 250 246 43 0 chr1 66437788 66437857 -130757575 + ID4_ SINE ID 1 72 -11 6 1091 504 0 0 0 chr1 66438265 66438321 -130757111 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1091 208 102 20 20 chr1 66439414 66439464 -130755968 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1091 587 289 48 58 chr1 66441007 66441213 -130754219 + B3A SINE B2 1 204 -12 6 1091 249 98 0 0 chr1 66442984 66443025 -130752407 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 6 1091 214 310 0 0 chr1 66443246 66443304 -130752128 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 6 1091 2033 47 0 23 chr1 66443896 66444159 -130751273 - L1_Mus1 LINE L1 -1 6566 6310 6 1091 235 277 138 0 chr1 66444174 66444239 -130751193 - ID2 SINE ID -9 74 1 6 1091 1230 235 17 0 chr1 66444302 66444591 -130750841 - Lx5 LINE L1 0 7050 6757 6 1091 539 156 7 0 chr1 66444582 66444677 -130750755 + Lx5 LINE L1 6433 6519 -531 6 1091 189 0 0 0 chr1 66445478 66445499 -130749933 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 1091 300 261 55 0 chr1 66446633 66446719 -130748713 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 6 1091 288 0 0 0 chr1 66446719 66446751 -130748681 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 6 1091 300 261 55 0 chr1 66446751 66446829 -130748603 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 6 1091 333 0 0 0 chr1 66446829 66446866 -130748566 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1091 25 0 0 0 chr1 66446941 66446966 -130748466 + AT_rich Low_complexity Low_complexity 1 25 0 6 1091 206 307 22 43 chr1 66449299 66449391 -130746041 - L2a LINE L2 -17 3409 3320 6 1091 24 53 0 0 chr1 66450240 66450278 -130745154 + AT_rich Low_complexity Low_complexity 1 38 0 6 1091 500 256 111 0 chr1 66451816 66451933 -130743499 + RSINE1 SINE B4 19 148 -17 6 1091 222 37 0 0 chr1 66451949 66451976 -130743456 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1092 329 62 21 0 chr1 66455118 66455166 -130740266 + (CATA)n Simple_repeat Simple_repeat 2 50 0 6 1092 1329 96 5 5 chr1 66455746 66455935 -130739497 + B2_Mm2 SINE B2 1 189 -6 6 1092 283 310 21 75 chr1 66464179 66464273 -130731159 + B4 SINE B4 109 197 -95 6 1092 596 322 39 0 chr1 66464398 66464603 -130730829 + B3 SINE B2 1 213 -3 6 1092 514 250 9 0 chr1 66464979 66465087 -130730345 - PB1D10 SINE Alu -7 110 2 6 1092 26 0 0 0 chr1 66467351 66467377 -130728055 + AT_rich Low_complexity Low_complexity 1 26 0 6 1092 1214 42 0 0 chr1 66468662 66468805 -130726627 + B1_Mm SINE Alu 2 144 -3 6 1092 638 178 8 0 chr1 66468811 66468940 -130726492 + GA-rich Low_complexity Low_complexity 1 130 0 6 1092 727 289 69 0 chr1 66469034 66469294 -130726138 + B4A SINE B4 3 280 -12 6 1092 3202 58 2 0 chr1 66469972 66470367 -130725065 - MTA_Mm LTR MaLR 0 396 1 6 1092 362 21 21 0 chr1 66471705 66471752 -130723680 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1092 28 61 0 0 chr1 66473014 66473063 -130722369 + AT_rich Low_complexity Low_complexity 1 49 0 6 1092 1156 55 7 0 chr1 66473064 66473209 -130722223 - B1_Mus1 SINE Alu -1 147 2 6 1092 21 0 0 0 chr1 66473298 66473319 -130722113 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 277 256 58 47 chr1 66473422 66473508 -130721924 - PB1D10 SINE Alu -8 109 23 6 1092 21 0 0 0 chr1 66473668 66473689 -130721743 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 24 0 0 0 chr1 66474241 66474265 -130721167 + AT_rich Low_complexity Low_complexity 1 24 0 6 1092 2300 116 20 6 chr1 66475085 66475441 -130719991 - Lx2 LINE L1 -2 6995 6635 6 1092 426 231 37 9 chr1 66475636 66475745 -130719687 + PB1D10 SINE Alu 3 114 -3 6 1092 198 91 0 0 chr1 66477130 66477163 -130718269 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1092 471 18 0 0 chr1 66479911 66479967 -130715465 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1092 23 54 0 0 chr1 66480170 66480207 -130715225 + AT_rich Low_complexity Low_complexity 1 37 0 6 1092 228 35 0 0 chr1 66480328 66480357 -130715075 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1092 876 196 0 0 chr1 66482042 66482221 -130713211 + GA-rich Low_complexity Low_complexity 2 180 0 6 1092 726 238 21 0 chr1 66482655 66482798 -130712634 + U1 snRNA snRNA 1 146 -19 6 1092 992 67 89 0 chr1 66483035 66483170 -130712262 + B1_Mus1 SINE Alu 2 148 0 6 1092 717 305 138 14 chr1 66483659 66483935 -130711497 - MER2 DNA MER2_type -10 335 26 6 1092 1104 280 62 41 chr1 66483964 66484356 -130711076 - MTD LTR MaLR 0 419 1 6 1092 462 148 187 24 chr1 66484995 66485161 -130710271 - Lx9 LINE L1 0 7644 7452 6 1092 22 0 0 0 chr1 66485714 66485736 -130709696 + AT_rich Low_complexity Low_complexity 1 22 0 6 1092 22 0 0 0 chr1 66485839 66485861 -130709571 + AT_rich Low_complexity Low_complexity 1 22 0 6 1092 23 33 0 0 chr1 66486338 66486368 -130709064 + AT_rich Low_complexity Low_complexity 1 30 0 6 1092 23 0 0 0 chr1 66486502 66486525 -130708907 + AT_rich Low_complexity Low_complexity 1 23 0 6 1092 567 0 0 0 chr1 66489214 66489277 -130706155 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1092 484 249 68 26 chr1 66490149 66490339 -130705093 - RMER15 LTR ERVL -14 561 364 6 1092 502 211 26 26 chr1 66490620 66490737 -130704695 - RLTR23 LTR ERV1 0 430 314 6 1092 453 222 83 140 chr1 66491076 66491233 -130704199 + RLTR19-int LTR ERVK 3078 3225 -2912 6 1092 313 292 99 28 chr1 66491391 66491532 -130703900 - MLT1K LTR MaLR -127 468 318 6 1092 1338 201 51 85 chr1 66491629 66492087 -130703345 - RLTR19-int LTR ERVK -2829 3308 2902 6 1092 1668 176 20 96 chr1 66492087 66492526 -130702906 + RMER17C LTR ERVK 1 406 -4 6 1092 2256 193 75 13 chr1 66492531 66493062 -130702370 - RLTR19-int LTR ERVK -3236 2901 2338 6 1092 320 208 33 186 chr1 66493083 66493325 -130702107 - RLTR19-int LTR ERVK -3448 2074 1870 6 1092 25 31 0 0 chr1 66493459 66493491 -130701941 + AT_rich Low_complexity Low_complexity 1 32 0 6 1092 449 193 11 0 chr1 66493582 66493670 -130701762 - RLTR19-int LTR ERVK -5062 1075 987 6 1092 831 243 156 28 chr1 66493725 66494051 -130701381 - RLTR9A LTR ERVK 0 368 1 6 1092 255 148 37 0 chr1 66494314 66494368 -130701064 - RLTR42-int LTR ERVK -4336 1186 1131 6 1092 334 189 39 54 chr1 66494614 66494743 -130700689 - MYSERV-int LTR ERVK -1085 5465 5339 6 1092 204 40 0 0 chr1 66494766 66494791 -130700641 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1092 1845 72 4 0 chr1 66495195 66495457 -130699975 + Lx2 LINE L1 6383 6645 -352 6 1092 1194 144 38 5 chr1 66495455 66495665 -130699767 + Lx2 LINE L1 6775 6991 -6 6 1092 226 314 32 23 chr1 66496639 66496857 -130698575 - RMER17C LTR ERVK -158 252 33 6 1092 1112 123 12 0 chr1 66497272 66497443 -130697989 + URR1A DNA MER1_type 54 226 0 6 1092 2542 143 58 58 chr1 66497479 66497978 -130697454 + RLTR19 LTR ERVK 1 499 0 6 1092 449 295 22 0 chr1 66499132 66499271 -130696161 + B1F SINE Alu 1 142 -7 6 1092 1342 244 83 6 chr1 66499554 66499880 -130695552 - MTD LTR MaLR -23 396 46 6 1092 305 258 22 0 chr1 66500063 66500152 -130695280 - MER58B DNA MER1_type -134 207 117 1 1092 780 149 116 7 chr1 66501786 66501941 -130693491 + RMER4B LTR ERVK 1 172 -413 2 1092 354 251 172 82 chr1 66502020 66502311 -130693121 + RMER4B LTR ERVK 328 561 -24 2 1092 406 122 36 12 chr1 66503235 66503318 -130692114 + CT-rich Low_complexity Low_complexity 1 85 0 3 1092 693 217 259 180 chr1 66503351 66503779 -130691653 + RLTR19 LTR ERVK 1 465 -34 4 1092 274 259 0 17 chr1 66504808 66504867 -130690565 + MLT1G LTR MaLR 30 87 -504 5 1092 226 308 47 70 chr1 66505168 66505297 -130690135 + MLT1G LTR MaLR 424 549 0 5 1092 208 286 0 0 chr1 66505512 66505568 -130689864 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1092 213 39 0 0 chr1 66505886 66505912 -130689520 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 7 1092 1080 75 7 20 chr1 66505914 66506064 -130689368 - B1_Mus1 SINE Alu 0 148 1 8 1092 6995 88 43 2 chr1 66508040 66509022 -130686410 + RLTR13D5 LTR ERVK 1 1022 -1 9 1092 315 307 38 104 chr1 66509789 66509835 -130685597 + L1MC2 LINE L1 5557 5584 -2458 1 1092 258 315 20 47 chr1 66509835 66509985 -130685447 - B1F1 SINE Alu -2 147 2 1 1092 315 307 38 104 chr1 66509985 66510149 -130685283 + L1MC2 LINE L1 5585 5753 -2289 1 1092 1958 232 56 36 chr1 66510149 66510646 -130684786 + RLTR18B LTR ERVK 1 507 -5 1 1092 444 306 119 30 chr1 66510662 66510742 -130684690 + L1MC2 LINE L1 5791 5873 -471 1 1092 336 94 0 0 chr1 66510742 66510795 -130684637 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1092 444 306 119 30 chr1 66510795 66511108 -130684324 + L1MC2 LINE L1 5874 6219 -125 1 1092 6872 59 0 0 chr1 66511104 66511998 -130683434 - L1_Mus1 LINE L1 0 6567 5674 1 1092 2795 74 0 0 chr1 66511986 66512366 -130683066 + L1_Mus1 LINE L1 5310 5689 -194 1 1092 287 282 0 78 chr1 66512359 66512513 -130682919 + L1MC2 LINE L1 6201 6342 -2 1 1092 286 360 0 26 chr1 66512522 66512636 -130682796 - MLT1E3 LTR MaLR -505 119 9 1 1092 229 310 59 20 chr1 66513619 66513721 -130681711 + PB1D10 SINE Alu 2 107 -10 1 1092 232 125 20 20 chr1 66513934 66513983 -130681449 + T-rich Low_complexity Low_complexity 1 49 0 1 1092 25 0 0 0 chr1 66514748 66514773 -130680659 + GC_rich Low_complexity Low_complexity 1 25 0 1 1092 544 315 146 14 chr1 66516183 66516614 -130678818 - L2a LINE L2 -5 3421 2934 1 1092 207 0 0 0 chr1 66517598 66517621 -130677811 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1092 257 160 74 25 chr1 66518164 66518286 -130677146 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1092 186 284 91 0 chr1 66518786 66518874 -130676558 - MIRb SINE MIR -50 218 123 2 1092 619 171 108 8 chr1 66519036 66519112 -130676320 - URR1B DNA MER1_type 0 225 150 2 1092 186 43 0 0 chr1 66519112 66519135 -130676297 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1092 619 171 108 8 chr1 66519135 66519188 -130676244 - URR1B DNA MER1_type -76 149 84 2 1092 534 31 0 0 chr1 66519277 66519341 -130676091 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1092 192 77 0 0 chr1 66519343 66519369 -130676063 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1092 191 291 139 63 chr1 66520457 66520615 -130674817 + L2c LINE L2 3033 3202 -185 2 1092 4434 58 0 3 chr1 66521209 66521775 -130673657 - L1Md_F2 LINE L1 -2 6580 6017 2 1092 180 0 0 0 chr1 66521884 66521904 -130673528 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1092 189 295 16 47 chr1 66522056 66522120 -130673312 + L3 LINE CR1 3477 3538 -951 3 1092 225 0 0 0 chr1 66522173 66522198 -130673234 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1092 424 312 126 65 chr1 66522993 66523192 -130672240 - MER20 DNA MER1_type -1 218 8 3 1092 234 116 0 0 chr1 66523382 66523425 -130672007 + (TTGG)n Simple_repeat Simple_repeat 4 46 0 3 1092 216 358 12 0 chr1 66523944 66524025 -130671407 - L2a LINE L2 -2 3424 3343 3 1092 378 0 0 0 chr1 66524090 66524132 -130671300 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 1092 1130 85 0 0 chr1 66524134 66524275 -130671157 - B1_Mus1 SINE Alu -6 142 2 3 1092 327 279 30 69 chr1 66524979 66525110 -130670322 - ID_B1 SINE B4 -8 216 91 3 1092 197 98 24 0 chr1 66525357 66525398 -130670034 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 3 1092 1066 97 14 0 chr1 66525399 66525544 -130669888 - B1_Mus2 SINE Alu 0 147 1 3 1092 279 347 158 15 chr1 66525606 66526063 -130669369 + L2a LINE L2 2488 3009 -410 4 1092 7118 75 3 0 chr1 66526071 66527044 -130668388 - L1_Mus1 LINE L1 -1 6566 5591 4 1092 267 308 26 53 chr1 66527254 66527367 -130668065 + L2a LINE L2 3317 3426 0 4 1092 1166 258 40 48 chr1 66527479 66527833 -130667599 - RMER15 LTR ERVL -14 561 211 4 1092 963 254 46 119 chr1 66527993 66528387 -130667045 + MTE2a LTR MaLR 1 365 -14 4 1092 734 270 10 21 chr1 66528450 66528643 -130666789 - B3A SINE B2 -6 192 2 4 1092 250 263 18 0 chr1 66528771 66528828 -130666604 + MER5B DNA MER1_type 1 58 -120 4 1092 424 268 97 13 chr1 66530090 66530205 -130665227 + MIR SINE MIR 79 199 -63 4 1092 423 56 0 0 chr1 66530205 66530259 -130665173 + (TATG)n Simple_repeat Simple_repeat 2 55 0 4 1092 424 268 97 13 chr1 66530259 66530298 -130665134 + MIR SINE MIR 200 245 -17 4 1092 264 122 0 0 chr1 66530753 66530794 -130664638 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1092 31 26 0 0 chr1 66531386 66531424 -130664008 + AT_rich Low_complexity Low_complexity 1 38 0 4 1092 210 379 43 0 chr1 66531922 66532062 -130663370 + MIR SINE MIR 96 241 -21 5 1092 274 267 236 11 chr1 66532893 66533071 -130662361 + MER33 DNA MER1_type 18 235 -89 5 1092 226 280 120 0 chr1 66533083 66533133 -130662299 - B4 SINE B4 -8 284 229 5 1092 211 182 0 0 chr1 66533143 66533176 -130662256 + polypyrimidine Low_complexity Low_complexity 1 33 0 5 1092 2301 183 76 32 chr1 66533182 66533680 -130661752 - RLTR11A LTR ERVK 0 528 9 5 1092 7505 162 118 14 chr1 66533681 66536300 -130659132 + Lx LINE L1 3615 6551 -103 5 1092 700 195 204 5 chr1 66536350 66536536 -130658896 - B4 SINE B4 -68 224 2 5 1092 235 286 36 72 chr1 66536684 66536767 -130658665 - ID SINE ID -140 84 5 5 1092 231 61 0 0 chr1 66537450 66537483 -130657949 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1092 1139 299 100 20 chr1 66538336 66539250 -130656182 - L1MB8 LINE L1 -1 6177 5192 5 1092 493 294 192 51 chr1 66539891 66540203 -130655229 - MLT1F-int LTR MaLR -427 1062 707 5 1092 23 33 0 0 chr1 66540229 66540259 -130655173 + AT_rich Low_complexity Low_complexity 1 30 0 6 1092 308 185 28 9 chr1 66540317 66540426 -130655006 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 1092 850 322 93 29 chr1 66540458 66540717 -130654715 - MLT1F-int LTR MaLR -840 649 372 5 1092 243 0 0 0 chr1 66540717 66540744 -130654688 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 1092 850 322 93 29 chr1 66540744 66541063 -130654369 - MLT1F-int LTR MaLR -1118 371 35 5 1092 441 335 113 31 chr1 66541088 66541168 -130654264 - MLT1F LTR MaLR -271 277 188 5 1092 468 0 0 0 chr1 66541168 66541220 -130654212 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1092 441 335 113 31 chr1 66541220 66541395 -130654037 - MLT1F LTR MaLR -361 187 3 5 1092 29 0 0 0 chr1 66542562 66542591 -130652841 + AT_rich Low_complexity Low_complexity 1 29 0 6 1092 410 0 0 20 chr1 66542979 66543030 -130652402 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 1092 582 15 0 0 chr1 66543654 66543721 -130651711 + (GGA)n Simple_repeat Simple_repeat 2 68 0 6 1092 339 167 33 0 chr1 66544357 66544447 -130650985 + GA-rich Low_complexity Low_complexity 2 94 0 6 1092 4631 42 0 2 chr1 66544774 66545327 -130650105 - L1Md_F2 LINE L1 -11 6571 6020 6 1092 331 253 0 0 chr1 66545991 66546066 -130649366 + ID_B1 SINE B4 146 220 -4 6 1092 349 342 39 0 chr1 66546556 66546711 -130648721 + RSINE1 SINE B4 5 165 0 7 1092 521 42 14 0 chr1 66546959 66547031 -130648401 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1092 248 338 13 13 chr1 66547182 66547260 -130648172 + ID_B1 SINE B4 99 176 -48 7 1092 279 0 0 0 chr1 66547497 66547528 -130647904 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 7 1092 1515 144 8 0 chr1 66547528 66547785 -130647647 - Lx3_Mus LINE L1 -23 6986 6728 7 1092 6742 96 21 8 chr1 66547801 66549002 -130646430 - Lx3_Mus LINE L1 -390 6619 5408 7 1092 372 243 99 0 chr1 66549045 66549156 -130646276 - MLT1C LTR MaLR 0 467 346 7 1092 225 299 269 13 chr1 66549184 66549333 -130646099 - MLT1C LTR MaLR -199 209 23 7 1092 567 0 0 0 chr1 66551190 66551253 -130644179 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1092 591 168 0 87 chr1 66551790 66551986 -130643446 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1092 266 357 53 47 chr1 66552498 66552648 -130642784 + MER5B DNA MER1_type 2 152 -26 7 1092 323 326 10 51 chr1 66552830 66553027 -130642405 - MER5A DNA MER1_type 0 189 1 7 1092 2355 142 43 47 chr1 66554134 66554557 -130640875 - MTC LTR MaLR 0 421 1 8 1092 438 125 0 0 chr1 66557381 66557461 -130637971 + (GGA)n Simple_repeat Simple_repeat 1 80 0 8 1092 705 164 0 0 chr1 66557573 66557713 -130637719 + (TG)n Simple_repeat Simple_repeat 1 140 0 8 1092 244 212 86 12 chr1 66557976 66558057 -130637375 - MLT1A1 LTR MaLR -54 354 268 8 1092 231 186 0 41 chr1 66558128 66558201 -130637231 + (TTG)n Simple_repeat Simple_repeat 2 71 0 8 1092 520 336 78 42 chr1 66558313 66558645 -130636787 - MLT1A LTR MaLR -6 368 25 8 1092 253 404 46 77 chr1 66560291 66560551 -130634881 - LTR16A LTR ERVL -184 267 16 8 1092 1309 90 0 31 chr1 66561263 66561458 -130633974 + B2_Mm2 SINE B2 1 189 -6 8 1092 38753 15 0 7 chr1 66561601 66567781 -130627651 - L1Md_A LINE L1 0 6582 448 8 1092 210 71 0 0 chr1 66568203 66568231 -130627201 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 1092 21 0 0 0 chr1 66569206 66569227 -130626205 + AT_rich Low_complexity Low_complexity 1 21 0 9 1092 329 305 9 70 chr1 66570996 66571127 -130624305 + MIR SINE MIR 34 156 -106 9 1092 863 243 28 37 chr1 66571496 66571714 -130623718 + ID_B1 SINE B4 4 219 -5 9 1092 246 62 0 0 chr1 66572479 66572511 -130622921 + (TATG)n Simple_repeat Simple_repeat 4 35 0 9 1092 299 250 14 0 chr1 66573306 66573378 -130622054 + CT-rich Low_complexity Low_complexity 2 74 0 9 1092 820 135 7 7 chr1 66574031 66574180 -130621252 + (TC)n Simple_repeat Simple_repeat 2 150 0 9 1092 699 12 0 0 chr1 66574745 66574825 -130620607 + (TCC)n Simple_repeat Simple_repeat 1 80 0 9 1092 926 35 0 0 chr1 66577127 66577240 -130618192 + B1_Mm SINE Alu 26 138 -9 9 1092 8783 79 16 1 chr1 66578467 66580435 -130614997 - Lx3_Mus LINE L1 -352 6657 4652 9 1092 7453 31 1 0 chr1 66580436 66581365 -130614067 + L1Md_F2 LINE L1 4657 5586 -297 9 1092 8134 45 3 1 chr1 66581365 66582359 -130613073 + L1Md_F2 LINE L1 5587 6582 0 9 136 21567 82 44 46 chr1 66582359 66586335 -130609097 - Lx3_Mus LINE L1 -1221 4665 676 9 1093 1179 189 9 84 chr1 66586334 66586657 -130608775 - Lx3_Mus LINE L1 -6668 316 18 9 1093 857 162 15 0 chr1 66586998 66587134 -130608298 + B1_Mur4 SINE Alu 2 139 -11 1 1093 243 0 0 0 chr1 66587139 66587166 -130608266 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1093 931 178 135 0 chr1 66587681 66587866 -130607566 + URR1A DNA MER1_type 1 210 -16 1 1093 1112 251 69 32 chr1 66587894 66588240 -130607192 + Lx6 LINE L1 7041 7399 -61 1 1093 670 138 16 0 chr1 66588240 66588363 -130607069 + GA-rich Low_complexity Low_complexity 4 128 0 1 1093 7556 38 1 0 chr1 66589506 66590832 -130604600 - L1Md_F2 LINE L1 -12 6570 5243 1 1093 34446 30 0 1 chr1 66590831 66595813 -130599619 - L1Md_T LINE L1 0 6582 1604 1 1093 24 0 0 0 chr1 66595976 66596000 -130599432 + AT_rich Low_complexity Low_complexity 1 24 0 1 1093 261 262 0 58 chr1 66598206 66598275 -130597157 + ID2 SINE ID 3 67 -16 1 1093 501 17 0 0 chr1 66598286 66598344 -130597088 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 1 1093 331 361 99 5 chr1 66599139 66599331 -130596101 - L3 LINE CR1 -69 4420 4211 1 1093 296 317 160 5 chr1 66599863 66600082 -130595350 - L3 LINE CR1 -875 3614 3362 1 1093 216 0 0 0 chr1 66600479 66600503 -130594929 + (CAG)n Simple_repeat Simple_repeat 2 25 0 1 1093 691 324 109 40 chr1 66600730 66601080 -130594352 + MLT1A LTR MaLR 1 374 0 1 1093 254 239 10 98 chr1 66601965 66602067 -130593365 + MIRb SINE MIR 137 229 -39 1 1093 735 213 14 22 chr1 66602115 66602254 -130593178 - B1_Mur1 SINE Alu -2 147 10 1 1093 235 319 50 22 chr1 66602608 66602705 -130592727 - MIR SINE MIR -144 124 23 1 1093 464 154 22 14 chr1 66604561 66604699 -130590733 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 1 1093 447 35 0 0 chr1 66606179 66606236 -130589196 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1093 408 301 20 27 chr1 66606325 66606472 -130588960 - B4A SINE B4 -105 187 42 1 1093 319 266 70 30 chr1 66606596 66606752 -130588680 - L1MEd LINE L1 -4551 1598 1435 1 1093 253 234 76 59 chr1 66606826 66606851 -130588581 + CYRA11_Mm Unknown Y-chromosome 146 172 -445 1 1093 650 133 530 0 chr1 66606851 66606998 -130588434 - URR1B DNA MER1_type 0 225 1 1 1093 321 279 94 50 chr1 66607044 66607225 -130588207 - L1MEd LINE L1 -4913 1206 1018 1 1093 932 224 74 10 chr1 66607253 66607456 -130587976 - B3 SINE B2 0 216 1 1 1093 399 332 50 10 chr1 66607466 66607667 -130587765 + MER20 DNA MER1_type 7 215 -4 1 1093 221 184 0 109 chr1 66607825 66607880 -130587552 + B1F SINE Alu 100 148 -1 1 1093 34 0 0 0 chr1 66608951 66608985 -130586447 + AT_rich Low_complexity Low_complexity 1 34 0 1 1093 585 210 47 47 chr1 66609076 66609226 -130586206 - ORR1B2 LTR MaLR -212 155 6 1 1093 1572 257 86 81 chr1 66609230 66609305 -130586127 - Lx9 LINE L1 -664 6980 6923 1 1093 3144 143 52 17 chr1 66609305 66609838 -130585594 - Lx3B LINE L1 -2 6971 6420 1 1093 1572 268 86 77 chr1 66609838 66610512 -130584920 - Lx9 LINE L1 -722 6922 6085 1 1093 6580 39 8 0 chr1 66610863 66611663 -130583769 - L1Md_T LINE L1 0 6582 5777 1 1093 929 9 0 0 chr1 66611663 66611775 -130583657 + L1Md_T LINE L1 5692 5803 -80 1 1093 632 211 22 15 chr1 66611961 66612096 -130583336 + B1_Mur1 SINE Alu 2 137 -12 1 1093 441 0 0 0 chr1 66612099 66612148 -130583284 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 1 1093 23 0 0 0 chr1 66613589 66613612 -130581820 + AT_rich Low_complexity Low_complexity 1 23 0 1 1093 236 338 0 0 chr1 66614110 66614178 -130581254 + CT-rich Low_complexity Low_complexity 1 68 0 1 1093 336 216 231 44 chr1 66614723 66614883 -130580549 + Lx7 LINE L1 7507 7696 0 1 1093 1294 171 0 28 chr1 66615135 66615388 -130580044 - Lx4A LINE L1 -1 7057 6812 1 1093 1860 49 0 69 chr1 66615450 66615712 -130579720 - L1_Mus1 LINE L1 -2 6565 6322 1 1093 4093 103 19 5 chr1 66615713 66616338 -130579094 + L1_Mm LINE L1 4653 5286 -597 1 1093 182 352 91 0 chr1 66616710 66616798 -130578634 - MIRb SINE MIR -67 201 106 1 1093 1327 94 84 0 chr1 66617696 66617909 -130577523 - Lx2A LINE L1 -1 7007 6777 1 1093 1768 120 0 14 chr1 66618386 66618664 -130576768 - L1Md_F2 LINE L1 -12 6570 6297 1 1093 5558 168 109 33 chr1 66618688 66619802 -130575630 - Lx2B LINE L1 -2 6998 5798 1 1093 829 108 182 13 chr1 66619802 66619961 -130575471 - B2_Mm2 SINE B2 -9 186 1 1 1093 5558 157 30 36 chr1 66619961 66620068 -130575364 - Lx2B LINE L1 -1203 5797 5693 1 1093 1001 313 44 0 chr1 66620223 66620472 -130574960 + B4 SINE B4 33 292 0 1 1093 537 110 0 0 chr1 66620480 66620580 -130574852 + (CATA)n Simple_repeat Simple_repeat 2 101 0 1 1093 180 0 0 0 chr1 66620707 66620727 -130574705 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1 1093 4749 161 208 3 chr1 66620796 66621958 -130573474 - L1_Mur1 LINE L1 -2599 3287 1887 1 1093 26 50 0 0 chr1 66621958 66621998 -130573434 + AT_rich Low_complexity Low_complexity 1 40 0 1 1093 39120 7 1 0 chr1 66622000 66628168 -130567264 - L1Md_A LINE L1 0 6582 406 1 1093 6260 81 17 12 chr1 66628153 66629684 -130565748 - L1VL2 LINE L1 -2018 1597 64 1 1093 10113 21 0 0 chr1 66630037 66631938 -130563494 - L1Md_T LINE L1 0 6582 4682 1 1093 275 215 0 30 chr1 66633461 66633528 -130561904 + (CATA)n Simple_repeat Simple_repeat 3 67 0 1 1093 203 250 14 57 chr1 66634339 66634479 -130560953 + (TATAA)n Simple_repeat Simple_repeat 2 135 0 1 1093 22 0 0 0 chr1 66635233 66635255 -130560177 + AT_rich Low_complexity Low_complexity 1 22 0 1 1093 488 112 0 22 chr1 66636351 66636442 -130558990 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 1 1093 189 0 0 0 chr1 66637241 66637262 -130558170 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1093 399 73 0 0 chr1 66637297 66637352 -130558080 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1093 841 311 14 44 chr1 66637431 66637724 -130557708 + B4A SINE B4 1 284 -8 1 1093 343 324 0 26 chr1 66638817 66638931 -130556501 - PB1D10 SINE Alu -1 116 6 1 1093 588 230 67 0 chr1 66639695 66639830 -130555602 + B1_Mur3 SINE Alu 6 149 0 1 1093 6573 83 12 3 chr1 66640561 66642305 -130553127 + L1VL2 LINE L1 67 1826 -1789 1 1093 303 286 0 42 chr1 66642440 66642535 -130552897 - PB1D10 SINE Alu 0 117 27 1 1093 208 0 62 0 chr1 66643179 66643211 -130552221 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1093 21 71 0 0 chr1 66643348 66643390 -130552042 + AT_rich Low_complexity Low_complexity 1 42 0 1 1093 22 0 0 0 chr1 66643469 66643491 -130551941 + AT_rich Low_complexity Low_complexity 1 22 0 1 1093 416 293 44 87 chr1 66644065 66644248 -130551184 - LTR86A2 LTR ERVL -333 175 1 1 1093 1447 150 17 126 chr1 66645132 66645536 -130549896 - Lx9 LINE L1 -2 7642 7283 1 1093 7077 1 0 0 chr1 66645705 66646505 -130548927 - L1Md_A LINE L1 0 6582 5807 1 1093 636 294 196 49 chr1 66646510 66646899 -130548533 - MLT1E2 LTR MaLR -54 451 2 1 1093 186 269 86 37 chr1 66646948 66647029 -130548403 + L2c LINE L2 3256 3340 -47 1 1093 225 305 39 69 chr1 66647305 66647407 -130548025 + PB1D10 SINE Alu 5 103 -14 1 1093 864 29 0 0 chr1 66647412 66647515 -130547917 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 1 1093 230 136 0 22 chr1 66647519 66647564 -130547868 + GA-rich Low_complexity Low_complexity 1 44 0 1 1093 729 277 99 36 chr1 66648021 66648354 -130547078 - Kanga1b DNA Tc2 -8 771 418 1 1093 184 320 0 0 chr1 66650174 66650224 -130545208 - MIRm SINE MIR -20 256 207 1 1093 189 370 30 41 chr1 66650449 66650618 -130544814 - L2a LINE L2 -342 3084 2918 1 1093 1931 29 0 0 chr1 66651498 66651736 -130543696 - L1Md_T LINE L1 -197 6385 6148 1 1093 743 10 0 0 chr1 66651737 66651833 -130543599 + L1Md_T LINE L1 6475 6570 -12 1 1093 25 31 0 0 chr1 66651833 66651865 -130543567 + AT_rich Low_complexity Low_complexity 1 32 0 1 1093 582 128 0 0 chr1 66652390 66652484 -130542948 + (TCCC)n Simple_repeat Simple_repeat 3 96 0 1 1093 475 262 24 8 chr1 66653400 66653523 -130541909 - MER5A1 DNA MER1_type -33 133 9 1 1093 180 240 100 0 chr1 66654671 66654721 -130540711 + L2b LINE L2 3007 3061 -314 1 1093 512 279 66 17 chr1 66655284 66655525 -130539907 + L1MC1 LINE L1 6062 6314 -19 1 1093 496 158 7 50 chr1 66655772 66655912 -130539520 - L1Md_F2 LINE L1 0 6582 6449 1 1093 2793 86 2 7 chr1 66655913 66656325 -130539107 + L1_Mm LINE L1 5091 5500 -383 1 1093 644 361 37 21 chr1 66656541 66656784 -130538648 - B4A SINE B4 -14 278 32 1 1093 505 332 17 1 chr1 66656872 66657051 -130538381 - MLT1F2 LTR MaLR -374 186 6 1 1093 270 0 0 0 chr1 66657170 66657200 -130538232 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1093 768 253 12 0 chr1 66657637 66657799 -130537633 + B3 SINE B2 53 216 0 1 1093 320 275 0 12 chr1 66657827 66657908 -130537524 + ID4 SINE ID 1 80 -3 1 1093 247 333 0 45 chr1 66657936 66658002 -130537430 + tRNA-Ala-GCA tRNA tRNA 2 64 -11 1 1093 348 293 101 35 chr1 66659144 66659503 -130535929 + MLT1D LTR MaLR 46 625 -2 1 1093 6275 61 23 5 chr1 66659596 66660390 -130535042 - RLTR13C2 LTR ERVK 0 808 1 1 1093 231 36 0 0 chr1 66662102 66662130 -130533302 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1093 331 286 53 9 chr1 66662247 66662360 -130533072 - RMER15 LTR ERVL -9 566 449 1 1093 327 299 106 38 chr1 66665112 66665272 -130530160 + MIR SINE MIR 30 200 -62 1 1093 203 133 22 22 chr1 66665488 66665534 -130529898 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 1093 736 232 140 16 chr1 66666374 66666567 -130528865 + ID_B1 SINE B4 2 218 -6 1 1093 475 323 15 8 chr1 66666880 66667011 -130528421 + ID_B1 SINE B4 90 221 -3 1 1093 232 120 40 0 chr1 66667448 66667498 -130527934 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1093 28 48 0 0 chr1 66667737 66667779 -130527653 + AT_rich Low_complexity Low_complexity 1 42 0 1 1093 251 204 0 20 chr1 66667812 66667862 -130527570 - B1F SINE Alu -3 146 98 1 1093 203 254 51 0 chr1 66667902 66667961 -130527471 - MIR3 SINE MIR -50 158 97 2 1093 387 250 77 57 chr1 66668170 66668374 -130527058 - MIRc SINE MIR -42 226 27 2 1093 233 267 52 0 chr1 66669543 66669641 -130525791 - MIR3 SINE MIR -38 170 70 2 1093 970 310 63 42 chr1 66670636 66671094 -130524338 - RMER5 LTR ERV1 -21 513 46 2 1093 3299 50 0 0 chr1 66671335 66671735 -130523697 - MTB LTR MaLR 0 400 1 2 1093 30 0 0 0 chr1 66672832 66672862 -130522570 + AT_rich Low_complexity Low_complexity 1 30 0 2 1093 1678 289 92 35 chr1 66673962 66675279 -130520153 - L1M4 LINE L1 -1107 5537 4146 2 1093 964 282 118 47 chr1 66675298 66675992 -130519440 - L1M4 LINE L1 -3132 3512 2749 2 1093 4044 190 39 16 chr1 66675992 66676832 -130518600 - Lx4B LINE L1 -2 7056 6197 2 1093 964 282 118 47 chr1 66676832 66676982 -130518450 - L1M4 LINE L1 -3896 2748 2609 2 1093 428 260 7 40 chr1 66677076 66677228 -130518204 - L1M4 LINE L1 -5344 1198 1052 2 1093 885 153 0 0 chr1 66678574 66678750 -130516682 + CT-rich Low_complexity Low_complexity 3 178 0 2 1093 217 312 16 0 chr1 66678761 66678825 -130516607 - ID4 SINE ID -17 66 2 2 1093 408 268 28 48 chr1 66678841 66678986 -130516446 - B1F SINE Alu -7 142 1 2 1093 264 59 0 0 chr1 66679561 66679595 -130515837 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1093 303 122 0 0 chr1 66679850 66679899 -130515533 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1093 884 199 128 25 chr1 66680394 66680590 -130514842 + B3 SINE B2 1 216 0 2 1093 1254 40 35 0 chr1 66681090 66681264 -130514168 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1093 2114 286 48 34 chr1 66681280 66681350 -130514082 - Lx8 LINE L1 -55 7418 7350 2 1093 563 208 244 0 chr1 66681350 66681518 -130513914 - B3 SINE B2 -6 210 2 2 1093 2114 286 48 34 chr1 66681518 66682282 -130513150 - Lx8 LINE L1 -124 7349 6572 2 1093 230 297 75 32 chr1 66684199 66684293 -130511139 - LTR81B LTR ERV1? -51 1342 1245 2 1093 22 70 0 0 chr1 66686350 66686393 -130509039 + AT_rich Low_complexity Low_complexity 1 43 0 2 1093 191 339 15 0 chr1 66687347 66687412 -130508020 + MIR SINE MIR 93 158 -104 2 1093 972 262 21 17 chr1 66687510 66687751 -130507681 - MTEa LTR MaLR 0 379 138 2 1093 22 0 0 0 chr1 66688574 66688596 -130506836 + AT_rich Low_complexity Low_complexity 1 22 0 2 1093 467 214 41 0 chr1 66688627 66688725 -130506707 + ID_B1 SINE B4 121 222 -2 2 1093 1036 285 28 18 chr1 66688728 66689014 -130506418 + B4A SINE B4 1 289 -3 2 1093 919 106 0 0 chr1 66689724 66689856 -130505576 - L1_Mus2 LINE L1 -240 6326 6195 2 1093 1801 65 8 8 chr1 66689856 66690105 -130505327 + L1_Mus2 LINE L1 6315 6563 -3 2 1093 860 162 12 53 chr1 66691298 66691467 -130503965 - RLTR25A LTR ERVK 0 1103 942 2 1093 396 229 33 0 chr1 66691472 66691625 -130503807 + CT-rich Low_complexity Low_complexity 1 158 0 2 1093 467 164 160 67 chr1 66691800 66691950 -130503482 - RLTR25A LTR ERVK -166 862 699 2 1093 776 158 30 0 chr1 66691974 66692107 -130503325 - RLTR25A LTR ERVK -962 141 5 2 1093 1294 227 7 11 chr1 66692300 66692581 -130502851 + Lx5 LINE L1 6771 7050 0 2 1093 464 248 86 21 chr1 66693448 66693588 -130501844 + MER5A DNA MER1_type 1 149 -40 2 1093 520 232 112 79 chr1 66694244 66694609 -130500823 + Lx2A1 LINE L1 5400 5779 -1229 2 1093 306 241 88 9 chr1 66695152 66695265 -130500167 - MER89 LTR ERV1 -69 490 369 2 1093 195 129 0 0 chr1 66695347 66695378 -130500054 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1093 21 0 0 0 chr1 66695780 66695801 -130499631 + AT_rich Low_complexity Low_complexity 1 21 0 2 1093 558 248 0 0 chr1 66698609 66698726 -130496706 - RSINE1 SINE B4 -46 119 3 2 1093 1699 178 5 78 chr1 66699057 66699462 -130495970 + RMER17C LTR ERVK 1 377 -33 2 1093 693 0 0 0 chr1 66699462 66699539 -130495893 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1093 189 0 0 0 chr1 66700041 66700062 -130495370 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1093 369 229 0 0 chr1 66702025 66702182 -130493250 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 1093 431 295 17 11 chr1 66702242 66702420 -130493012 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1093 324 314 55 34 chr1 66702991 66703131 -130492301 + B1_Mur4 SINE Alu 9 149 -1 2 1093 183 80 0 0 chr1 66703533 66703558 -130491874 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1093 694 50 0 0 chr1 66704050 66704151 -130491281 - L1Md_F3 LINE L1 -14 6570 6470 2 1093 1110 87 0 0 chr1 66704407 66704545 -130490887 + B1_Mus1 SINE Alu 1 138 -10 2 1093 216 0 0 0 chr1 66704545 66704569 -130490863 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1093 236 139 0 0 chr1 66704576 66704612 -130490820 - U2 snRNA snRNA -152 36 1 2 1093 242 244 33 0 chr1 66705316 66705406 -130490026 + L1MC5 LINE L1 7110 7202 -759 2 1093 569 40 0 13 chr1 66705412 66705489 -130489943 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1093 352 318 151 0 chr1 66705510 66705636 -130489796 + ID_B1 SINE B4 6 150 -74 2 1093 2195 120 2 32 chr1 66705636 66706041 -130489391 + L1_Mm LINE L1 1767 2159 -3724 2 1093 30885 93 8 6 chr1 66706042 66709969 -130485463 + L1Md_F2 LINE L1 421 4307 -1576 2 1093 369 0 0 0 chr1 66709969 66710010 -130485422 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1093 30885 70 6 6 chr1 66710010 66711280 -130484152 + L1Md_F2 LINE L1 4308 5586 -297 2 1093 7838 55 8 7 chr1 66711281 66712275 -130483157 + L1Md_F2 LINE L1 5588 6582 0 2 1093 6933 105 61 0 chr1 66712290 66713455 -130481977 + MusHAL1 LINE L1 987 2222 -490 2 1093 7316 102 6 1 chr1 66713452 66715309 -130480123 + L1_Mus3 LINE L1 4770 6636 -2 2 1094 1317 90 11 5 chr1 66716825 66717015 -130478417 - B2_Mm2 SINE B2 -2 193 3 2 1094 236 54 54 0 chr1 66718640 66718677 -130476755 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 1094 369 0 0 0 chr1 66719825 66719866 -130475566 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1094 313 267 104 30 chr1 66720859 66720994 -130474438 + HAL1 LINE L1 863 1007 -1500 2 1094 612 51 0 0 chr1 66721834 66721913 -130473519 - B1_Mus2 SINE Alu 0 147 69 2 1094 2340 246 86 17 chr1 66721967 66722837 -130472595 - Lx6 LINE L1 -52 7408 6245 2 1094 666 0 0 0 chr1 66723389 66723463 -130471969 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 2 1094 261 311 57 25 chr1 66725101 66725223 -130470209 - MIRb SINE MIR -39 229 104 2 1094 1310 77 0 6 chr1 66727053 66727235 -130468197 - L1_Mus2 LINE L1 0 6566 6386 2 1094 508 256 27 68 chr1 66727505 66727652 -130467780 - ID_B1 SINE B4 0 224 84 2 1094 21 57 0 0 chr1 66728549 66728584 -130466848 + AT_rich Low_complexity Low_complexity 1 35 0 2 1094 3602 8 0 0 chr1 66728697 66729099 -130466333 + L1Md_A LINE L1 6181 6582 0 2 1094 197 322 68 25 chr1 66730245 66730363 -130465069 + MIR3 SINE MIR 84 206 -2 2 1094 230 273 182 0 chr1 66730648 66730714 -130464718 - ID4_ SINE ID -3 80 3 2 1094 229 224 0 0 chr1 66732106 66732155 -130463277 + T-rich Low_complexity Low_complexity 1 49 0 2 1094 378 246 0 0 chr1 66732548 66732617 -130462815 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 2 1094 234 312 25 84 chr1 66736160 66736279 -130459153 + MT2B2 LTR ERVL 153 264 -320 2 1094 426 158 112 31 chr1 66736184 66736282 -130459150 + B1_Mm SINE Alu 10 115 -32 2 1094 291 28 0 0 chr1 66736282 66736318 -130459114 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1094 204 40 0 0 chr1 66738905 66738930 -130456502 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1094 273 271 23 12 chr1 66739571 66739657 -130455775 + PB1D10 SINE Alu 1 87 -30 2 1094 251 330 28 0 chr1 66739657 66739680 -130455752 + ID_B1 SINE B4 82 193 -31 2 1094 393 238 59 0 chr1 66739811 66739912 -130455520 - PB1D7 SINE Alu -13 107 1 2 1094 189 0 0 0 chr1 66743392 66743413 -130452019 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1094 4151 38 73 0 chr1 66746289 66746811 -130448621 - LTRIS2 LTR ERV1 0 564 5 2 1094 227 223 286 0 chr1 66746873 66746985 -130448447 + Lx8 LINE L1 6976 7119 -354 2 1094 262 252 46 83 chr1 66748286 66748394 -130447038 - MIR SINE MIR -67 141 38 2 1094 441 243 56 0 chr1 66748562 66748669 -130446763 - PB1D10 SINE Alu -4 113 1 2 1094 1184 165 145 28 chr1 66749010 66749328 -130446104 - Lx9 LINE L1 -4 7640 7286 2 1094 271 329 28 35 chr1 66750028 66750170 -130445262 + Charlie8 DNA MER1_type 70 210 -2218 2 1094 188 261 59 44 chr1 66751357 66751425 -130444007 + MIR SINE MIR 31 99 -163 2 1094 189 0 0 0 chr1 66751730 66751751 -130443681 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1094 1257 65 21 47 chr1 66752406 66752599 -130442833 - B2_Mm1t SINE B2 -3 190 3 2 1094 722 210 125 0 chr1 66753510 66753686 -130441746 - B3 SINE B2 -18 198 1 2 1094 422 292 161 0 chr1 66754003 66754171 -130441261 - MER3 DNA MER1_type 0 209 15 2 1094 448 307 53 7 chr1 66754217 66754368 -130441064 + RMER30 DNA MER1_type 2 159 -43 2 1094 21 0 0 0 chr1 66754694 66754715 -130440717 + AT_rich Low_complexity Low_complexity 1 21 0 2 1094 525 268 153 0 chr1 66754957 66755114 -130440318 + B3A SINE B2 2 182 -16 2 1094 243 299 11 84 chr1 66755322 66755417 -130440015 - RSINE1 SINE B4 0 165 78 2 1094 293 341 167 27 chr1 66755619 66756032 -130439400 + Charlie1a DNA MER1_type 17 487 -968 2 1094 220 27 54 0 chr1 66756052 66756089 -130439343 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1094 999 118 0 0 chr1 66756089 66756228 -130439204 - B1_Mus1 SINE Alu -4 144 6 2 1094 1085 217 36 11 chr1 66756233 66756512 -130438920 - RCHARR1 DNA MER1_type 0 974 689 2 1094 333 222 156 9 chr1 66756513 66756622 -130438810 - Tigger7 DNA MER2_type -106 2385 2261 2 1094 9447 94 10 8 chr1 66756639 66758864 -130436568 - L1_Mus3 LINE L1 -2 6636 4402 2 1094 863 254 0 0 chr1 66758938 66759135 -130436297 - B3 SINE B2 -17 199 3 2 1094 2948 160 139 23 chr1 66759632 66760277 -130435155 - RMER6D LTR ERVK 0 720 1 2 1094 198 0 0 0 chr1 66761606 66761628 -130433804 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1094 219 247 37 168 chr1 66763211 66763318 -130432114 + PB1 SINE Alu 32 124 -3 3 1094 201 39 0 0 chr1 66763396 66763422 -130432010 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1094 576 0 0 0 chr1 66763951 66764015 -130431417 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1094 29 60 0 0 chr1 66769056 66769106 -130426326 + AT_rich Low_complexity Low_complexity 1 50 0 3 1094 242 285 156 1 chr1 66769469 66769562 -130425870 - B1F SINE Alu -12 108 4 3 1094 396 295 9 9 chr1 66770096 66770209 -130425223 - PB1D10 SINE Alu 0 117 5 3 1094 25 105 0 0 chr1 66770978 66771073 -130424359 + AT_rich Low_complexity Low_complexity 1 95 0 3 1094 26 0 0 0 chr1 66773049 66773075 -130422357 + AT_rich Low_complexity Low_complexity 1 26 0 3 1094 200 268 98 89 chr1 66775549 66775672 -130419760 + MIR SINE MIR 8 131 -131 3 1094 448 315 8 8 chr1 66777592 66777720 -130417712 + MER5A1 DNA MER1_type 33 160 -6 3 1094 261 0 0 0 chr1 66777912 66777941 -130417491 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1094 357 24 0 0 chr1 66777941 66777982 -130417450 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1094 1240 39 13 0 chr1 66779769 66779924 -130415508 + B2_Mm2 SINE B2 2 158 -37 3 1094 189 0 0 0 chr1 66779925 66779946 -130415486 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 3 1094 793 177 171 6 chr1 66780133 66780309 -130415123 - B3 SINE B2 -11 205 1 3 1094 327 222 90 10 chr1 66780651 66780751 -130414681 - B1F1 SINE Alu -20 129 22 3 1094 409 157 31 102 chr1 66780785 66780913 -130414519 + PB1D9 SINE Alu 2 120 0 3 1094 30 27 0 0 chr1 66781525 66781562 -130413870 + AT_rich Low_complexity Low_complexity 1 37 0 3 1094 30 27 0 0 chr1 66782621 66782658 -130412774 + AT_rich Low_complexity Low_complexity 1 37 0 3 1094 509 248 24 84 chr1 66782884 66783051 -130412381 - RSINE1 SINE B4 0 165 9 3 1094 333 308 242 0 chr1 66783101 66783221 -130412211 + RSINE1 SINE B4 3 151 -14 3 1094 626 246 28 0 chr1 66783458 66783600 -130411832 - B1_Mur2 SINE Alu -3 146 1 3 1094 28 61 0 0 chr1 66783924 66783973 -130411459 + AT_rich Low_complexity Low_complexity 1 49 0 3 1094 272 317 111 35 chr1 66784277 66784421 -130411011 + MIRb SINE MIR 68 222 -46 3 1094 235 111 0 0 chr1 66784431 66784467 -130410965 + PB1D9 SINE Alu 81 116 -4 3 1094 882 238 6 11 chr1 66785105 66785288 -130410144 + B3A SINE B2 1 182 -16 3 1094 538 243 133 36 chr1 66785381 66785577 -130409855 - B3 SINE B2 0 216 2 3 1094 570 324 52 22 chr1 66785889 66786119 -130409313 + B4 SINE B4 1 237 -55 3 1094 334 269 0 0 chr1 66786202 66786280 -130409152 + Lx9 LINE L1 6959 7036 -608 3 1094 228 217 16 16 chr1 66786480 66786541 -130408891 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 3 1094 328 283 39 29 chr1 66786949 66787051 -130408381 - B4A SINE B4 -8 284 182 3 1094 300 345 113 0 chr1 66787187 66787329 -130408103 - MLT1A0 LTR MaLR -78 287 130 3 1094 362 276 136 72 chr1 66787409 66787674 -130407758 - MLT-int LTR MaLR -9 1726 1445 3 1094 322 293 192 75 chr1 66787693 66787959 -130407473 + L1M5 LINE L1 2469 2765 -3381 3 1094 566 280 50 30 chr1 66787969 66788168 -130407264 + B3 SINE B2 4 206 -10 3 1094 34 0 0 0 chr1 66788274 66788308 -130407124 + AT_rich Low_complexity Low_complexity 1 34 0 3 1094 3174 184 148 83 chr1 66789006 66790111 -130405321 + RMER12 LTR ERVK 1 1572 0 3 1094 22 0 0 0 chr1 66790188 66790210 -130405222 + AT_rich Low_complexity Low_complexity 1 22 0 3 1094 24 53 0 0 chr1 66790635 66790673 -130404759 + AT_rich Low_complexity Low_complexity 1 38 0 3 1094 251 308 58 0 chr1 66790814 66790918 -130404514 + L2a LINE L2 3286 3395 -31 3 1094 527 317 41 18 chr1 66792118 66792288 -130403144 + B3A SINE B2 3 176 -22 3 1094 282 311 0 26 chr1 66792612 66792688 -130402744 + ID4_ SINE ID 3 76 -7 3 1094 230 0 33 0 chr1 66793281 66793311 -130402121 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1094 1131 51 0 0 chr1 66793311 66793448 -130401984 - B1_Mus2 SINE Alu -9 138 2 3 1094 21 57 0 0 chr1 66793511 66793546 -130401886 + AT_rich Low_complexity Low_complexity 1 35 0 3 1094 39 68 0 0 chr1 66794237 66794311 -130401121 + AT_rich Low_complexity Low_complexity 1 74 0 3 1094 785 119 21 0 chr1 66794662 66794805 -130400627 - L1_Mus3 LINE L1 -1 6637 6492 3 1094 396 238 304 16 chr1 66795720 66795904 -130399528 - Lx6 LINE L1 -123 7337 7101 3 1094 307 302 69 69 chr1 66796425 66796628 -130398804 + MLT1F-int LTR MaLR 1198 1400 -89 3 1094 1399 284 92 15 chr1 66796853 66797395 -130398037 + Lx7 LINE L1 6804 7360 -336 3 1094 273 218 0 25 chr1 66797454 66797534 -130397898 + Lx7 LINE L1 7602 7679 -17 3 1094 442 274 42 8 chr1 66797568 66797686 -130397746 + B3A SINE B2 3 124 -74 3 1094 960 96 34 7 chr1 66798814 66798961 -130396471 - B2_Mm2 SINE B2 0 195 45 3 1094 469 167 229 16 chr1 66798964 66799086 -130396346 + B1_Mur2 SINE Alu 1 148 -1 3 1094 285 39 59 0 chr1 66799166 66799217 -130396215 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1094 1178 55 0 0 chr1 66799300 66799446 -130395986 + B1_Mus2 SINE Alu 2 147 0 3 1094 207 0 0 0 chr1 66799446 66799469 -130395963 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1094 885 322 100 55 chr1 66799575 66800195 -130395237 - MLT1B-int LTR MaLR -506 865 233 3 1094 261 0 0 0 chr1 66800195 66800224 -130395208 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1094 339 300 72 52 chr1 66800224 66800412 -130395020 - MLT1B-int LTR MaLR -1503 232 12 3 1094 334 345 94 62 chr1 66800409 66800653 -130394779 - MLT1B LTR MaLR -13 377 126 3 1094 22 56 0 0 chr1 66800680 66800716 -130394716 + AT_rich Low_complexity Low_complexity 1 36 0 3 1094 326 336 42 0 chr1 66800761 66800880 -130394552 - MLT1C LTR MaLR -77 390 267 3 1094 742 123 272 0 chr1 66800887 66801049 -130394383 + URR1A DNA MER1_type 1 206 -20 3 1094 503 265 148 24 chr1 66801054 66801263 -130394169 - MLT1C LTR MaLR -229 238 4 3 1094 510 17 0 0 chr1 66801511 66801570 -130393862 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 3 1094 322 276 149 77 chr1 66801602 66802159 -130393273 - L1MCa LINE L1 -5173 1578 982 3 1094 302 236 21 118 chr1 66802399 66802584 -130392848 - L1MA4 LINE L1 -367 5936 5781 3 1094 741 308 63 21 chr1 66802660 66803041 -130392391 - L1MA4 LINE L1 -645 5655 5259 3 1094 325 339 85 0 chr1 66803068 66803198 -130392234 - L1MA4 LINE L1 -1207 4936 4796 3 1094 850 301 67 27 chr1 66803222 66803786 -130391646 - L1MA4 LINE L1 -1549 4594 4008 3 1094 321 89 0 0 chr1 66803789 66803834 -130391598 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1094 502 272 61 30 chr1 66803847 66804034 -130391398 + L1_Mur3 LINE L1 3762 3956 -1924 3 1094 1198 18 6 30 chr1 66804034 66804203 -130391229 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 3 1094 1288 28 0 32 chr1 66804227 66804413 -130391019 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1094 642 13 0 0 chr1 66804415 66804490 -130390942 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 3 1094 248 293 106 21 chr1 66804724 66804961 -130390471 - L1_Mur3 LINE L1 -4171 1709 1453 3 1094 465 34 0 0 chr1 66804962 66805021 -130390411 + (ATTTG)n Simple_repeat Simple_repeat 1 59 0 3 1094 398 108 0 15 chr1 66805127 66805193 -130390239 + (TTA)n Simple_repeat Simple_repeat 2 66 0 3 1094 277 316 43 0 chr1 66806449 66806566 -130388866 - L1MCa LINE L1 -5881 164 43 3 1094 294 250 80 36 chr1 66806719 66806831 -130388601 - MER105 DNA DNA -5 199 83 3 1094 309 302 176 84 chr1 66806847 66806961 -130388471 - L1MC4 LINE L1 -189 7853 7757 3 1094 270 246 14 42 chr1 66806961 66807033 -130388399 - ID4 SINE ID -11 72 3 3 1094 309 302 176 84 chr1 66807033 66807265 -130388167 - L1MC4 LINE L1 -286 7756 7475 3 1094 755 264 22 6 chr1 66807581 66807764 -130387668 - ID_B1 SINE B4 -11 213 28 3 1094 322 298 55 46 chr1 66807809 66807918 -130387514 + ID_B1 SINE B4 107 216 -8 3 1094 256 258 15 0 chr1 66807976 66808042 -130387390 - L1MC4 LINE L1 -1032 7010 6944 3 1094 232 48 48 0 chr1 66808279 66808321 -130387111 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 3 1094 277 207 52 0 chr1 66808339 66808397 -130387035 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 3 1094 619 280 73 73 chr1 66809405 66809721 -130385711 + RMER5 LTR ERV1 42 357 -177 3 1094 39 22 0 0 chr1 66809825 66809871 -130385561 + AT_rich Low_complexity Low_complexity 1 46 0 3 1094 378 0 0 0 chr1 66810236 66810278 -130385154 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1094 478 279 204 73 chr1 66810656 66810876 -130384556 + B4A SINE B4 6 254 -38 3 1094 340 355 14 7 chr1 66811226 66811365 -130384067 + B1F1 SINE Alu 2 141 -8 3 1094 754 142 47 0 chr1 66811504 66811631 -130383801 + B1_Mus1 SINE Alu 9 141 -7 3 1094 1067 200 34 0 chr1 66811806 66812011 -130383421 - RMER1A Other Other -318 712 501 3 1094 1331 155 47 57 chr1 66812010 66812311 -130383121 + RMER1A Other Other 733 1030 0 3 1094 263 255 167 21 chr1 66812698 66812794 -130382638 - PB1D10 SINE Alu -7 110 1 3 1094 8168 119 47 15 chr1 66812830 66814755 -130380677 + Lx3C LINE L1 4998 6976 0 3 1094 31 44 0 0 chr1 66816183 66816228 -130379204 + AT_rich Low_complexity Low_complexity 1 45 0 3 1094 350 310 61 9 chr1 66816874 66816988 -130378444 - PB1D7 SINE Alu 0 120 1 3 1094 521 303 52 7 chr1 66816988 66817062 -130378370 - ID SINE ID -141 83 3 3 1094 258 319 73 84 chr1 66817167 66817464 -130377968 + MTEb LTR MaLR 52 359 0 3 1094 213 278 18 18 chr1 66817735 66817790 -130377642 - ID SINE ID -168 56 2 3 1094 645 306 0 0 chr1 66817998 66818181 -130377251 - B3A SINE B2 -13 185 3 3 1094 461 262 39 0 chr1 66818184 66818287 -130377145 - PB1D10 SINE Alu -5 112 6 3 1094 306 125 0 0 chr1 66818512 66818560 -130376872 + (CATA)n Simple_repeat Simple_repeat 3 50 0 3 1094 260 291 67 34 chr1 66819676 66819765 -130375667 - L1_Mur3 LINE L1 -2057 3823 3732 3 1094 442 265 43 108 chr1 66820300 66820486 -130374946 + B3A SINE B2 3 176 -22 3 1094 25 51 0 0 chr1 66821346 66821385 -130374047 + AT_rich Low_complexity Low_complexity 1 39 0 3 1094 4809 185 130 31 chr1 66821387 66822783 -130372649 + L1_Rod LINE L1 4139 5671 -176 3 1094 579 254 253 23 chr1 66822794 66823559 -130371873 + L1MB2 LINE L1 4705 5657 -517 4 1094 543 252 30 0 chr1 66823577 66823708 -130371724 - B1_Mur1 SINE Alu -1 148 14 4 1094 366 260 156 46 chr1 66823716 66823954 -130371478 + L1MB2 LINE L1 5658 5921 -250 4 1094 347 219 39 123 chr1 66824013 66824039 -130371393 + MT2B LTR ERVL 139 153 -448 4 1094 720 189 8 8 chr1 66824039 66824167 -130371265 + B1_Mur4 SINE Alu 2 129 -21 4 1094 192 77 0 0 chr1 66824375 66824401 -130371031 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1094 23 0 0 0 chr1 66824471 66824494 -130370938 + AT_rich Low_complexity Low_complexity 1 23 0 4 1094 223 122 20 20 chr1 66825226 66825276 -130370156 + CT-rich Low_complexity Low_complexity 3 52 0 4 1094 475 235 34 0 chr1 66825294 66825423 -130370009 - B1_Mus1 SINE Alu -1 148 3 4 1094 340 250 68 43 chr1 66825328 66825445 -130369987 - MT2B LTR ERVL -339 262 143 4 1094 24 67 0 0 chr1 66825829 66825874 -130369558 + AT_rich Low_complexity Low_complexity 1 45 0 4 1094 753 174 23 8 chr1 66826092 66826225 -130369207 + B1_Mur2 SINE Alu 13 147 -2 4 1094 21 36 0 0 chr1 66827203 66827231 -130368201 + AT_rich Low_complexity Low_complexity 1 28 0 4 1094 2582 112 75 0 chr1 66827519 66827931 -130367501 + Lx2B LINE L1 6551 6993 -7 4 1094 387 235 144 56 chr1 66828429 66828609 -130366823 - B3 SINE B2 -18 198 3 4 1094 551 289 62 0 chr1 66828930 66829141 -130366291 - MER58A DNA MER1_type 0 224 1 4 1094 285 320 91 15 chr1 66829597 66829936 -130365496 - L1M5 LINE L1 -2456 3690 3326 4 1094 1075 99 0 0 chr1 66831050 66831192 -130364240 + B1_Mm SINE Alu 1 142 -5 4 1094 3684 190 148 6 chr1 66831554 66832228 -130363204 + Lx9 LINE L1 6611 7372 -272 4 1094 189 0 0 0 chr1 66832228 66832249 -130363183 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1094 3684 190 148 6 chr1 66832249 66832478 -130362954 + Lx9 LINE L1 7373 7642 -2 4 1094 760 305 45 23 chr1 66834377 66834642 -130360790 - B4A SINE B4 -18 274 4 4 1094 254 374 71 7 chr1 66834657 66834797 -130360635 + MLT1J-int LTR MaLR 1118 1266 -121 4 1094 340 324 36 28 chr1 66834937 66835076 -130360356 - B1F SINE Alu -7 142 4 4 1094 271 297 113 28 chr1 66836376 66836518 -130358914 - Tigger9a DNA Tigger -1 731 578 4 1094 475 263 9 0 chr1 66836738 66836852 -130358580 - Tigger9a DNA Tigger -495 237 123 4 1094 794 131 15 49 chr1 66837190 66837339 -130358093 + B1_Mur1 SINE Alu 9 147 0 4 1094 24 0 0 0 chr1 66837543 66837567 -130357865 + AT_rich Low_complexity Low_complexity 1 24 0 4 1094 930 249 233 18 chr1 66837581 66838756 -130356676 - L1MA7 LINE L1 -18 7233 5806 4 1094 271 279 174 3 chr1 66838957 66839255 -130356177 - L1MA7 LINE L1 -1634 5466 5118 4 1094 376 345 168 38 chr1 66839299 66839615 -130355817 + MLT1A LTR MaLR 8 364 -10 4 1094 225 275 32 32 chr1 66839621 66839715 -130355717 - L1MA7 LINE L1 -2056 5050 4957 4 1094 439 221 35 0 chr1 66839782 66839868 -130355564 - B1_Mur4 SINE Alu -61 89 1 4 1094 226 170 42 21 chr1 66839832 66839880 -130355552 - MT2B2 LTR ERVL -292 292 244 4 1094 317 250 230 13 chr1 66839900 66840452 -130354980 - L1MA7 LINE L1 -2664 4436 3765 4 1094 437 305 49 55 chr1 66840523 66840686 -130354746 - RSINE1 SINE B4 -1 164 3 4 1094 957 252 102 67 chr1 66840690 66840974 -130354458 - L1MA7 LINE L1 -3363 3740 3441 4 1094 395 242 87 16 chr1 66840974 66841100 -130354332 + B1F2 SINE Alu 4 138 -11 4 1094 957 252 102 67 chr1 66841100 66841462 -130353970 - L1MA7 LINE L1 -3663 3440 3071 4 1094 458 204 9 0 chr1 66842344 66842452 -130352980 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1094 326 191 116 11 chr1 66842452 66842547 -130352885 - L1MA7 LINE L1 -4338 2769 2665 4 1094 220 300 137 41 chr1 66842638 66842710 -130352722 - RSINE1 SINE B4 0 165 99 4 1094 204 40 0 0 chr1 66842710 66842735 -130352697 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 4 1094 220 300 137 41 chr1 66842735 66842808 -130352624 - RSINE1 SINE B4 -67 98 7 4 1094 293 231 105 80 chr1 66843147 66843346 -130352086 - L1MA7 LINE L1 -4907 2130 1932 4 1094 211 311 9 55 chr1 66844218 66844327 -130351105 + B1F SINE Alu 19 122 -27 4 1094 263 346 0 0 chr1 66844249 66844330 -130351102 + ID_B1 SINE B4 123 203 -21 4 1094 372 297 99 26 chr1 66844424 66844576 -130350856 + MER2 DNA MER2_type 156 318 -27 4 1094 307 271 12 0 chr1 66844629 66844714 -130350718 + Lx7 LINE L1 4679 4764 -1116 4 1094 583 204 9 0 chr1 66844714 66844822 -130350610 + B1_Mur1 SINE Alu 1 109 -40 4 136 3938 251 92 28 chr1 66844845 66847236 -130348196 + Lx7 LINE L1 4753 7317 -379 4 1095 267 262 0 0 chr1 66847288 66847368 -130348064 + T-rich Low_complexity Low_complexity 1 80 0 4 1095 297 254 0 29 chr1 66848984 66849053 -130346379 + ID4 SINE ID 17 83 0 4 1095 22 0 0 0 chr1 66850545 66850567 -130344865 + AT_rich Low_complexity Low_complexity 1 22 0 4 1095 713 195 48 8 chr1 66850630 66850781 -130344651 + B3A SINE B2 6 163 -53 4 1095 477 0 0 0 chr1 66850781 66850834 -130344598 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1095 623 240 60 32 chr1 66850834 66850867 -130344565 + B3 SINE B2 164 195 -21 4 1095 329 326 77 55 chr1 66851228 66851574 -130343858 + MLT1F2 LTR MaLR 18 442 -118 4 1095 183 42 0 0 chr1 66851795 66851819 -130343613 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1095 525 177 31 0 chr1 66852120 66852227 -130343205 - B3 SINE B2 0 216 108 4 1095 250 320 0 0 chr1 66852291 66852394 -130343038 + L1M4 LINE L1 3763 3865 -2281 4 1095 1216 90 51 0 chr1 66852608 66852786 -130342646 - B2_Mm1t SINE B2 -6 187 1 4 1095 306 273 120 14 chr1 66852792 66853000 -130342432 + L1MD LINE L1 4031 4260 -1886 4 1095 1489 187 268 12 chr1 66853150 66853572 -130341860 + MT2A LTR ERVL 4 533 0 4 1095 320 292 142 14 chr1 66853661 66854086 -130341346 + L1M4 LINE L1 4419 4896 -1250 4 1095 236 259 136 50 chr1 66854076 66854275 -130341157 + L1MD LINE L1 4944 5159 -987 4 1095 264 59 0 0 chr1 66854300 66854334 -130341098 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 4 1095 551 284 0 26 chr1 66854345 66854497 -130340935 - B1_Mur1 SINE Alu 0 149 2 4 1095 327 304 167 50 chr1 66854525 66855087 -130340345 + Charlie21a DNA MER1_type 239 866 -347 4 1095 1692 214 18 32 chr1 66855281 66855624 -130339808 + ORR1D1 LTR MaLR 37 374 0 4 1095 1349 40 11 0 chr1 66855823 66855998 -130339434 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 4 1095 555 332 127 34 chr1 66856194 66856665 -130338767 - L2 LINE L2 -665 2754 2240 4 1095 568 262 114 57 chr1 66856995 66857294 -130338138 + L1MCa LINE L1 1067 1382 -5126 4 1095 212 268 125 68 chr1 66857511 66857599 -130337833 - PB1 SINE Alu -4 123 31 4 1095 264 217 48 115 chr1 66857567 66857590 -130337842 - MT2B LTR ERVL -337 264 171 4 1095 436 145 13 26 chr1 66857590 66857668 -130337764 - PB1D9 SINE Alu -35 85 9 4 1095 306 232 44 44 chr1 66857591 66857681 -130337751 - B4 SINE B4 -123 169 80 4 1095 238 253 56 149 chr1 66857734 66857841 -130337591 - MER3 DNA MER1_type -76 133 37 4 1095 188 35 35 0 chr1 66859391 66859420 -130336012 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1095 392 319 34 55 chr1 66859557 66859703 -130335729 - RSINE1 SINE B4 -19 146 4 4 1095 676 279 17 0 chr1 66859838 66860017 -130335415 + B3A SINE B2 3 184 -14 4 1095 221 333 40 0 chr1 66860752 66860827 -130334605 + PB1D10 SINE Alu 40 117 0 4 1095 306 277 133 8 chr1 66862175 66862295 -130333137 + L1M5 LINE L1 5712 5846 -278 4 1095 278 284 76 68 chr1 66862664 66862851 -130332581 - MIR SINE MIR -78 190 16 4 1095 21 0 0 0 chr1 66863523 66863544 -130331888 + GC_rich Low_complexity Low_complexity 1 21 0 4 1095 23 33 0 0 chr1 66863870 66863900 -130331532 + GC_rich Low_complexity Low_complexity 1 30 0 4 1095 21 0 0 0 chr1 66864192 66864213 -130331219 + GC_rich Low_complexity Low_complexity 1 21 0 4 1095 24 0 0 0 chr1 66864265 66864289 -130331143 + GC_rich Low_complexity Low_complexity 1 24 0 4 1095 297 209 280 25 chr1 66865313 66865431 -130330001 + B1_Mur2 SINE Alu 2 149 0 4 1095 1110 68 0 33 chr1 66865776 66865928 -130329504 + B1_Mm SINE Alu 1 147 0 4 1095 211 289 229 43 chr1 66867059 66867247 -130328185 + L2a LINE L2 3203 3425 -1 4 1095 458 301 66 16 chr1 66867942 66868185 -130327247 + L1ME2 LINE L1 5846 6100 -64 4 1095 304 236 62 62 chr1 66868506 66868619 -130326813 - PB1 SINE Alu 0 127 15 4 1095 567 264 58 0 chr1 66869872 66869993 -130325439 + B1_Mur2 SINE Alu 1 128 -21 4 1095 209 57 0 28 chr1 66869999 66870035 -130325397 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1095 1235 108 11 0 chr1 66870131 66870307 -130325125 + B2_Mm1t SINE B2 2 179 -14 4 1095 414 91 0 5 chr1 66870320 66870385 -130325047 + B2_Mm2 SINE B2 47 109 -107 4 1095 29 28 0 0 chr1 66870391 66870427 -130325005 + AT_rich Low_complexity Low_complexity 1 36 0 4 1095 280 301 86 8 chr1 66870548 66870663 -130324769 + B1F2 SINE Alu 2 95 -54 4 1095 266 290 0 91 chr1 66870674 66870689 -130324743 + MT2B2 LTR ERVL 152 156 -428 4 1095 518 240 0 10 chr1 66870689 66870786 -130324646 + PB1D10 SINE Alu 2 97 -20 4 1095 736 223 25 6 chr1 66870820 66870978 -130324454 + Lx8 LINE L1 7188 7348 -125 4 1095 264 337 91 58 chr1 66871088 66871147 -130324285 + LTR16B1 LTR ERVL 53 110 -370 4 1095 523 184 46 78 chr1 66871147 66871300 -130324132 - B1F2 SINE Alu -1 148 1 4 1095 264 337 91 58 chr1 66871300 66871514 -130323918 + LTR16B1 LTR ERVL 111 334 -146 4 1095 321 365 44 15 chr1 66871850 66872053 -130323379 + L1MC5 LINE L1 7292 7500 -461 4 1095 261 118 0 0 chr1 66872088 66872139 -130323293 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1095 593 217 166 75 chr1 66872347 66872546 -130322886 + MLT1A1 LTR MaLR 121 337 -71 4 1095 425 300 136 50 chr1 66872688 66873344 -130322088 + L1MD3 LINE L1 4213 4924 -1222 4 1095 615 293 93 20 chr1 66873610 66873857 -130321575 + LTR75 LTR ERVL 5 269 -293 4 1095 725 228 194 62 chr1 66873998 66874139 -130321293 + L1MD3 LINE L1 5295 5434 -2561 4 1095 859 269 5 28 chr1 66874139 66874357 -130321075 + B3 SINE B2 1 213 -3 4 1095 725 229 188 58 chr1 66874357 66874906 -130320526 + L1MD3 LINE L1 5435 6088 -271 4 1095 619 261 10 77 chr1 66875119 66875314 -130320118 - B3A SINE B2 -16 182 1 4 1095 503 292 83 0 chr1 66876428 66876596 -130318836 + B3A SINE B2 1 182 -16 4 1095 22 35 0 0 chr1 66876601 66876630 -130318802 + AT_rich Low_complexity Low_complexity 1 29 0 4 1095 534 232 14 61 chr1 66876637 66876784 -130318648 + B1_Mur1 SINE Alu 1 140 -9 4 1095 189 94 0 0 chr1 66878855 66878887 -130316545 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1095 190 382 34 0 chr1 66878932 66879021 -130316411 - MIRm SINE MIR -179 97 6 5 1095 263 277 15 15 chr1 66881200 66881266 -130314166 + ID4_ SINE ID 4 69 -14 5 1095 1005 284 43 101 chr1 66881267 66881662 -130313770 + MTE2a LTR MaLR 4 375 -4 5 1095 1136 58 0 0 chr1 66881733 66881871 -130313561 + B1_Mus1 SINE Alu 2 139 -9 5 1095 642 72 0 0 chr1 66881871 66881968 -130313464 + (CAAAC)n Simple_repeat Simple_repeat 2 98 0 5 1095 522 193 0 17 chr1 66881997 66882113 -130313319 + Lx7 LINE L1 7579 7692 -4 5 1095 210 37 0 0 chr1 66882170 66882197 -130313235 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 1095 376 247 27 118 chr1 66882210 66882320 -130313112 + PB1D9 SINE Alu 2 101 -19 5 1095 276 218 0 171 chr1 66882228 66882333 -130313099 + MT2B LTR ERVL 180 266 -335 5 1095 2329 141 15 0 chr1 66882335 66882738 -130312694 + L1_Mur2 LINE L1 5456 5864 -13 5 1095 2311 204 29 87 chr1 66882733 66883330 -130312102 + Lx5 LINE L1 6478 7039 -11 5 1095 1086 8 0 0 chr1 66883385 66883508 -130311924 + (GGAAA)n Simple_repeat Simple_repeat 4 126 0 5 1095 635 311 93 0 chr1 66883651 66883844 -130311588 + ID_B1 SINE B4 8 218 -6 5 1095 24 0 0 0 chr1 66884709 66884733 -130310699 + AT_rich Low_complexity Low_complexity 1 24 0 5 1095 183 80 0 0 chr1 66885134 66885159 -130310273 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 5 1095 748 175 66 0 chr1 66885706 66885843 -130309589 + B1_Mur3 SINE Alu 4 149 0 5 1095 285 322 22 11 chr1 66886727 66886818 -130308614 + PB1D10 SINE Alu 1 92 -25 5 1095 311 42 42 0 chr1 66886818 66886866 -130308566 + (TCTCTG)n Simple_repeat Simple_repeat 2 51 0 5 1095 294 50 0 0 chr1 66886972 66887012 -130308420 + (CAGAGA)n Simple_repeat Simple_repeat 1 40 0 5 1095 647 241 48 7 chr1 66887056 66887202 -130308230 + RSINE1 SINE B4 12 163 -2 5 1095 181 222 16 16 chr1 66887209 66887273 -130308159 + GA-rich Low_complexity Low_complexity 1 64 0 5 1095 959 59 19 13 chr1 66887310 66887464 -130307968 + L1_Mus3 LINE L1 6480 6634 -4 5 1095 22 0 0 0 chr1 66888375 66888397 -130307035 + AT_rich Low_complexity Low_complexity 1 22 0 5 1095 2848 106 14 20 chr1 66889041 66889486 -130305946 - Lx LINE L1 0 6654 6213 5 1095 459 213 156 0 chr1 66892549 66892671 -130302761 - B1F1 SINE Alu -6 143 3 5 1095 377 287 27 27 chr1 66893806 66893917 -130301515 + PB1D10 SINE Alu 6 116 -1 5 1095 978 209 28 33 chr1 66894194 66894407 -130301025 - B3 SINE B2 -4 212 1 5 1095 495 307 117 15 chr1 66894456 66894661 -130300771 - B4A SINE B4 -38 254 29 5 1095 651 247 91 20 chr1 66895347 66895545 -130299887 + B3 SINE B2 1 212 -4 5 1095 531 335 0 6 chr1 66896296 66896479 -130298953 + B3A SINE B2 1 182 -16 5 1095 24 53 0 0 chr1 66896490 66896528 -130298904 + AT_rich Low_complexity Low_complexity 1 38 0 5 1095 462 273 36 0 chr1 66896571 66896710 -130298722 - B1F1 SINE Alu -3 146 3 5 1095 500 158 28 65 chr1 66896893 66897001 -130298431 - B1_Mur2 SINE Alu 0 149 46 5 1095 644 250 0 81 chr1 66897084 66897258 -130298174 - RSINE1 SINE B4 0 165 6 5 1095 192 40 0 0 chr1 66897461 66897486 -130297946 + (ACATG)n Simple_repeat Simple_repeat 5 29 0 5 1095 228 254 134 60 chr1 66897486 66897612 -130297820 + MLT1D LTR MaLR 80 215 -290 5 1095 758 222 69 16 chr1 66897885 66898053 -130297379 + B3A SINE B2 1 181 -17 5 1095 243 61 0 0 chr1 66898053 66898086 -130297346 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1095 758 222 69 16 chr1 66898086 66898105 -130297327 + B3A SINE B2 182 198 0 5 1095 230 191 21 0 chr1 66898313 66898360 -130297072 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1095 650 300 51 17 chr1 66899395 66899629 -130295803 - MER2 DNA MER2_type -99 246 5 5 1095 546 223 0 24 chr1 66900856 66900980 -130294452 - B1F2 SINE Alu -1 148 28 5 1095 663 226 36 0 chr1 66901688 66901825 -130293607 + B1_Mur1 SINE Alu 5 146 -3 5 1095 655 58 10 0 chr1 66901948 66902051 -130293381 + L1Md_F2 LINE L1 6479 6582 0 5 1095 633 236 241 0 chr1 66902082 66902256 -130293176 + B3 SINE B2 1 216 0 5 1095 3267 179 109 74 chr1 66902419 66903413 -130292019 + RLTR25B LTR ERVK 1 1028 0 5 1095 299 245 48 113 chr1 66903496 66903620 -130291812 + PB1D10 SINE Alu 2 117 0 5 1095 1395 71 5 11 chr1 66903631 66903816 -130291616 + B2_Mm1t SINE B2 2 185 -8 5 1095 21 57 0 0 chr1 66904819 66904854 -130290578 + AT_rich Low_complexity Low_complexity 1 35 0 5 1095 2289 123 53 77 chr1 66904987 66905454 -130289978 + RMER6B LTR ERVK 1 456 -5 5 1095 3000 121 14 16 chr1 66906084 66906595 -130288837 + RMER16 LTR ERVK 1 510 -23 5 1095 2121 277 57 35 chr1 66906686 66907454 -130287978 + L1_Mur3 LINE L1 3981 4764 -1116 5 1095 501 62 0 0 chr1 66907454 66907519 -130287913 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1095 2121 277 57 35 chr1 66907519 66907615 -130287817 + L1_Mur3 LINE L1 4765 4864 -1016 5 1095 805 228 153 28 chr1 66907641 66907889 -130287543 - ORR1D2 LTR MaLR 0 370 92 5 1095 309 274 0 70 chr1 66908365 66908479 -130286953 - PB1D9 SINE Alu -6 114 9 5 1095 318 247 18 47 chr1 66909746 66909916 -130285516 + (CGGG)n Simple_repeat Simple_repeat 1 165 0 5 1095 26 0 0 0 chr1 66910609 66910635 -130284797 + AT_rich Low_complexity Low_complexity 1 26 0 5 1095 307 258 116 21 chr1 66910727 66910822 -130284610 - B4A SINE B4 -84 208 105 5 1095 396 0 0 0 chr1 66911061 66911105 -130284327 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1095 314 324 9 37 chr1 66911307 66911416 -130284016 - PB1 SINE Alu -10 117 12 5 1095 721 234 30 65 chr1 66911992 66912193 -130283239 + B3 SINE B2 2 195 0 5 1095 419 241 39 29 chr1 66912351 66912506 -130282926 + MIR SINE MIR 89 240 -28 5 1095 1288 211 111 9 chr1 66913829 66914041 -130281391 + RMER1B Other Other 50 285 -781 5 1095 2730 42 45 0 chr1 66914041 66914372 -130281060 - ORR1A0 LTR MaLR 0 346 1 5 1095 1288 211 111 9 chr1 66914372 66914493 -130280939 + RMER1B Other Other 286 416 -650 5 1095 785 304 55 5 chr1 66914475 66914693 -130280739 + RMER1A Other Other 14 242 -788 5 1095 3855 239 116 4 chr1 66914703 66915628 -130279804 + RMER1A Other Other 2 1029 -1 5 1095 442 312 119 39 chr1 66916230 66916384 -130279048 - MLT1A0 LTR MaLR -52 313 137 5 1095 1958 175 49 8 chr1 66916384 66916753 -130278679 - ORR1C2 LTR MaLR 0 384 1 5 1095 442 312 119 39 chr1 66916753 66916858 -130278574 - MLT1A0 LTR MaLR -229 136 33 5 1095 855 29 0 0 chr1 66916863 66916965 -130278467 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 1095 597 14 0 0 chr1 66917502 66917572 -130277860 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1095 579 254 0 8 chr1 66917572 66917703 -130277729 - B1_Mur2 SINE Alu -19 130 1 5 1095 612 314 7 0 chr1 66917823 66917976 -130277456 - RSINE1 SINE B4 -9 156 3 5 1095 357 319 72 55 chr1 66919425 66919717 -130275715 - LTR82A LTR ERVL -50 822 526 5 1095 1071 175 14 14 chr1 66919854 66920041 -130275391 + MTC LTR MaLR 1 187 -234 5 1095 1250 193 184 34 chr1 66920041 66920421 -130275011 + RMER17B LTR ERVK 3 439 -519 5 1095 1340 188 73 27 chr1 66920440 66920769 -130274663 + RMER13B LTR ERVK 272 615 -293 5 1095 473 157 83 0 chr1 66920740 66920848 -130274584 - B3A SINE B2 -80 118 2 5 1095 409 78 0 0 chr1 66921207 66921271 -130274161 + ORR1A4 LTR MaLR 1 64 -265 5 1095 221 175 0 31 chr1 66921777 66921842 -130273590 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 5 1095 272 309 9 76 chr1 66921850 66921955 -130273477 - PB1D9 SINE Alu -21 99 2 5 1095 426 295 364 21 chr1 66922105 66922479 -130272953 - MLT1D LTR MaLR -3 502 1 5 1095 254 161 34 51 chr1 66923050 66923109 -130272323 + G-rich Low_complexity Low_complexity 1 58 0 5 1095 525 359 48 12 chr1 66923139 66923472 -130271960 - MamRep605 Unknown Unknown -114 762 418 5 1095 313 248 167 0 chr1 66923570 66923660 -130271772 - PB1D7 SINE Alu -8 112 8 5 1095 1744 124 57 57 chr1 66924017 66924301 -130271131 + ORR1A1 LTR MaLR 6 293 -53 5 1095 1387 89 21 0 chr1 66924301 66924492 -130270940 + B2_Mm2 SINE B2 1 195 0 5 1095 1744 124 57 57 chr1 66924492 66924540 -130270892 + ORR1A1 LTR MaLR 294 338 -8 5 1095 885 295 36 63 chr1 66924944 66925306 -130270126 + ORR1E LTR MaLR 8 359 0 5 1095 4219 151 52 69 chr1 66925441 66926357 -130269075 + RMER19B LTR ERVK 1 901 -1 5 1095 357 167 0 0 chr1 66926397 66926457 -130268975 - RLTR22_Mus LTR ERVK -206 1602 1543 5 1095 3840 167 47 24 chr1 66926576 66927442 -130267990 - RLTR22_Mur LTR ERVK -962 886 1 5 1095 4146 58 4 2 chr1 66927540 66928042 -130267390 + RLTR1C LTR ERV1 1 503 0 5 1095 444 37 0 0 chr1 66928267 66928321 -130267111 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1095 815 239 89 96 chr1 66928354 66928780 -130266652 + RLTR23 LTR ERV1 8 430 0 5 1095 339 177 0 0 chr1 66928958 66929020 -130266412 - MTE2b LTR MaLR -256 123 62 5 1095 668 164 67 0 chr1 66929090 66929224 -130266208 + URR1B DNA MER1_type 83 225 0 5 1095 227 355 0 38 chr1 66929224 66929303 -130266129 - MTE2b LTR MaLR -300 79 4 5 1095 278 340 33 65 chr1 66929303 66929513 -130265919 - ORR1E LTR MaLR -156 203 1 5 1095 837 154 0 0 chr1 66929528 66929664 -130265768 + B1_Mur3 SINE Alu 5 140 -9 5 1095 1409 280 47 80 chr1 66930081 66930671 -130264761 - L1MC LINE L1 -1346 4800 4246 5 1095 370 322 35 0 chr1 66930671 66930786 -130264646 - PB1 SINE Alu -8 119 1 5 1095 1409 280 47 80 chr1 66930786 66930941 -130264491 - L1MC LINE L1 -1901 4245 4080 5 1095 941 253 119 22 chr1 66930969 66931288 -130264144 + ORR1E LTR MaLR 6 355 -4 5 1095 459 185 33 8 chr1 66931288 66931353 -130264079 + polypyrimidine Low_complexity Low_complexity 59 123 0 6 1095 1186 80 17 0 chr1 66931353 66931528 -130263904 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 1095 459 185 33 8 chr1 66931528 66931582 -130263850 + polypyrimidine Low_complexity Low_complexity 1 58 0 6 1095 1277 80 9 3 chr1 66931582 66931924 -130263508 + (TTTC)n Simple_repeat Simple_repeat 1 344 0 6 1095 5027 123 36 0 chr1 66931933 66932691 -130262741 - Lx4A LINE L1 -9 7049 6265 6 1095 30 27 0 0 chr1 66932824 66932861 -130262571 + AT_rich Low_complexity Low_complexity 1 37 0 6 1095 1868 199 29 0 chr1 66932868 66933210 -130262222 - Lx5 LINE L1 -5 7045 6694 6 1095 845 166 21 0 chr1 66933325 66933470 -130261962 + B1_Mur2 SINE Alu 1 148 -1 6 1095 21 0 0 0 chr1 66933589 66933610 -130261822 + AT_rich Low_complexity Low_complexity 1 21 0 6 1095 956 232 19 5 chr1 66933982 66934194 -130261238 + B3 SINE B2 2 216 0 6 1095 2890 207 51 7 chr1 66934234 66934846 -130260586 - Lx7 LINE L1 -287 7409 6771 6 1095 4179 120 52 1 chr1 66934851 66936037 -130259395 + L1VL1 LINE L1 369 1625 -2073 6 1095 13981 97 6 6 chr1 66936010 66938811 -130256621 + L1_Mus3 LINE L1 3840 6638 0 6 1095 1066 191 43 5 chr1 66938851 66939061 -130256371 - MTC LTR MaLR -8 413 196 6 1095 1202 283 47 86 chr1 66939089 66939386 -130256046 - Lx6 LINE L1 -26 7434 7166 6 1095 648 38 0 0 chr1 66939386 66939465 -130255967 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1095 1202 293 55 88 chr1 66939465 66939718 -130255714 - Lx6 LINE L1 -295 7165 6963 6 1095 457 263 0 0 chr1 66939725 66939824 -130255608 - MTC LTR MaLR -208 213 115 6 1095 345 45 0 0 chr1 66939824 66939868 -130255564 + L1_Mur3 LINE L1 4151 4194 -1686 6 1095 464 93 13 0 chr1 66939868 66939943 -130255489 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1095 298 165 10 90 chr1 66939944 66940044 -130255388 + L1_Mur3 LINE L1 4165 4256 -1624 6 1095 670 155 31 8 chr1 66940040 66940170 -130255262 + L1_Mur3 LINE L1 4363 4495 -1385 6 1095 931 270 28 94 chr1 66940170 66940602 -130254830 + BGLII_B LTR ERVK 1 414 -27 6 1095 970 106 14 7 chr1 66940622 66940765 -130254667 + L1_Mur3 LINE L1 4488 4631 -1249 6 1095 243 0 0 0 chr1 66940777 66940804 -130254628 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1095 1128 201 8 15 chr1 66940816 66941084 -130254348 - L1_Mur3 LINE L1 -4332 1548 1283 6 1095 434 320 51 6 chr1 66941246 66941422 -130254010 + RMER20B LTR ERVK 236 419 -208 6 1095 873 0 0 0 chr1 66941522 66941619 -130253813 + (CACCAT)n Simple_repeat Simple_repeat 2 98 0 6 1095 189 0 0 0 chr1 66941882 66941903 -130253529 + (TGG)n Simple_repeat Simple_repeat 2 22 0 6 1095 247 294 14 42 chr1 66942612 66942683 -130252749 + AluF_3 SINE Alu 138 206 -105 6 1095 283 263 27 95 chr1 66943349 66943496 -130251936 + MIRb SINE MIR 73 209 -59 6 1095 222 62 0 0 chr1 66943619 66943651 -130251781 + (C)n Simple_repeat Simple_repeat 1 32 0 6 1095 500 290 49 0 chr1 66944374 66944536 -130250896 + MER5B DNA MER1_type 1 170 -8 6 1095 257 318 0 0 chr1 66945492 66945558 -130249874 - PB1D7 SINE Alu -9 111 46 6 1095 252 306 121 50 chr1 66945801 66945942 -130249490 - L2 LINE L2 -2854 565 415 6 1095 2626 67 0 0 chr1 66946189 66946563 -130248869 - L1_Mm LINE L1 -2526 3357 2984 6 1095 2424 90 50 14 chr1 66946565 66946925 -130248507 + L1Md_F2 LINE L1 6195 6567 -15 6 1095 523 291 0 74 chr1 66947160 66947323 -130248109 - B3A SINE B2 -6 192 42 6 1095 467 342 147 25 chr1 66947464 66947860 -130247572 + L1MD2 LINE L1 5894 6337 -22 6 1095 601 112 32 0 chr1 66948337 66948462 -130246970 + (CAGAGA)n Simple_repeat Simple_repeat 2 130 0 6 1095 352 306 0 98 chr1 66948483 66948606 -130246826 - PB1D9 SINE Alu 0 120 10 6 1095 21 36 0 0 chr1 66948769 66948797 -130246635 + AT_rich Low_complexity Low_complexity 1 28 0 6 1095 456 246 195 17 chr1 66948797 66948971 -130246461 - B3 SINE B2 -10 206 2 6 1095 425 284 0 52 chr1 66949457 66949572 -130245860 + PB1D7 SINE Alu 9 117 -3 6 1095 557 310 94 86 chr1 66950060 66950537 -130244895 + Tigger10 DNA Tigger 1238 1718 -125 6 1095 180 0 0 0 chr1 66950724 66950744 -130244688 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1095 457 336 18 85 chr1 66950810 66951034 -130244398 + B4A SINE B4 1 209 -83 6 1095 1168 55 14 0 chr1 66951035 66951180 -130244252 + B1_Mus1 SINE Alu 2 148 0 6 1095 316 82 16 16 chr1 66951184 66951246 -130244186 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 6 1095 1133 86 0 6 chr1 66951246 66951410 -130244022 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 6 1095 410 202 11 43 chr1 66951410 66951503 -130243929 + B4A SINE B4 202 291 -1 6 1095 531 0 0 0 chr1 66951583 66951642 -130243790 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1095 234 0 0 0 chr1 66951816 66951842 -130243590 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1095 299 200 93 0 chr1 66952459 66952534 -130242898 - MTEa LTR MaLR -22 337 256 6 1095 484 326 52 26 chr1 66952580 66952772 -130242660 - MTEa LTR MaLR -182 197 1 6 1095 590 309 66 4 chr1 66953281 66953525 -130241907 + MLT2C2 LTR ERVL 1 259 -205 6 1095 338 91 18 0 chr1 66953827 66953882 -130241550 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1095 229 326 43 21 chr1 66954442 66954536 -130240896 - PB1D10 SINE Alu -2 115 20 6 1095 17617 100 16 1 chr1 66955080 66958690 -130236742 + L1_Mus3 LINE L1 3099 6638 0 6 1095 1149 204 82 36 chr1 66958847 66959226 -130236206 - RMER16 LTR ERVK -1 532 1 6 1095 208 288 17 17 chr1 66960818 66960878 -130234554 - MIRb SINE MIR -110 158 99 6 1095 359 342 74 0 chr1 66961375 66961565 -130233867 + MER121 Unknown Unknown 129 332 -80 6 1095 252 259 35 0 chr1 66962224 66962282 -130233150 + PB1 SINE Alu 68 127 0 6 1095 339 266 26 17 chr1 66962281 66962388 -130233044 + PB1D10 SINE Alu 1 117 -32 6 1095 21 0 0 0 chr1 66962388 66962409 -130233023 + AT_rich Low_complexity Low_complexity 1 21 0 6 1095 2087 191 42 10 chr1 66962668 66963075 -130232357 - MTC LTR MaLR -1 420 1 6 1095 199 322 51 92 chr1 66964775 66964970 -130230462 - L2c LINE L2 -261 3126 2940 6 1095 447 19 0 0 chr1 66965334 66965386 -130230046 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1095 291 345 69 59 chr1 66965396 66965787 -130229645 - L2c LINE L2 -933 2486 2092 6 1095 216 300 152 15 chr1 66966166 66966298 -130229134 - MIRm SINE MIR -117 159 10 6 1095 714 249 69 10 chr1 66966419 66966458 -130228974 - B3 SINE B2 0 216 175 6 1095 549 44 0 0 chr1 66966458 66966526 -130228906 + (TATG)n Simple_repeat Simple_repeat 4 71 0 6 1095 714 249 69 10 chr1 66966526 66966689 -130228743 - B3 SINE B2 -42 174 3 6 1095 716 203 0 0 chr1 66966908 66967026 -130228406 - B4 SINE B4 -2 290 173 6 1095 252 311 132 16 chr1 66967452 66967573 -130227859 - MER115 DNA Tip100 -46 647 513 6 1095 288 130 0 0 chr1 66969139 66969185 -130226247 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 6 1095 733 188 23 15 chr1 66969185 66969315 -130226117 - B1_Mus2 SINE Alu -12 135 5 6 1095 876 139 0 0 chr1 66970123 66970267 -130225165 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 6 1095 571 321 6 12 chr1 66970606 66970770 -130224662 - RSINE1 SINE B4 -2 163 1 6 1095 207 271 0 0 chr1 66971861 66971909 -130223523 + CT-rich Low_complexity Low_complexity 4 51 0 6 1095 22 35 0 0 chr1 66972013 66972042 -130223390 + AT_rich Low_complexity Low_complexity 1 29 0 6 1095 223 240 20 0 chr1 66972212 66972262 -130223170 + CT-rich Low_complexity Low_complexity 2 52 0 6 1095 264 281 202 0 chr1 66972262 66972351 -130223081 - PB1D7 SINE Alu -10 110 4 6 1095 188 300 118 32 chr1 66972378 66972471 -130222961 + MIR SINE MIR 31 131 -77 6 1095 457 251 106 27 chr1 66973679 66973867 -130221565 - B3 SINE B2 -13 203 1 6 1095 305 225 11 0 chr1 66974269 66974358 -130221074 + (TATATG)n Simple_repeat Simple_repeat 3 92 0 6 1095 557 144 16 16 chr1 66974680 66974749 -130220683 + polypyrimidine Low_complexity Low_complexity 59 128 0 6 1095 1227 72 0 16 chr1 66974749 66974932 -130220500 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1095 557 144 16 16 chr1 66974932 66974958 -130220474 + polypyrimidine Low_complexity Low_complexity 32 58 0 6 1095 959 129 6 17 chr1 66974958 66975139 -130220293 + CT-rich Low_complexity Low_complexity 2 180 0 6 1095 557 144 16 16 chr1 66975139 66975155 -130220277 + polypyrimidine Low_complexity Low_complexity 16 31 0 6 1095 1263 94 0 0 chr1 66975155 66975335 -130220097 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1095 557 144 16 16 chr1 66975335 66975348 -130220084 + polypyrimidine Low_complexity Low_complexity 3 15 0 6 1095 1230 242 78 44 chr1 66975973 66976449 -130218983 + Lx9 LINE L1 7133 7624 -20 6 1095 257 259 44 18 chr1 66977653 66977767 -130217665 - L1MD1 LINE L1 -1 6241 6125 6 1096 255 331 49 16 chr1 66978886 66979009 -130216423 + MER3 DNA MER1_type 82 208 -1 6 1096 1082 141 116 0 chr1 66979557 66979756 -130215676 + URR1A DNA MER1_type 5 226 0 6 1096 181 280 20 20 chr1 66984564 66984615 -130210817 + L2a LINE L2 3298 3348 -78 6 1096 241 253 26 39 chr1 66984645 66984723 -130210709 + L2a LINE L2 3340 3416 -10 6 1096 34 24 0 0 chr1 66985554 66985595 -130209837 + AT_rich Low_complexity Low_complexity 1 41 0 6 1096 21 57 0 0 chr1 66985970 66986005 -130209427 + AT_rich Low_complexity Low_complexity 1 35 0 6 1096 324 70 0 0 chr1 66987204 66987247 -130208185 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 6 1096 606 28 0 0 chr1 66989605 66989677 -130205755 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 6 1096 405 0 0 0 chr1 66990625 66990670 -130204762 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1096 23 0 0 0 chr1 66990947 66990970 -130204462 + AT_rich Low_complexity Low_complexity 1 23 0 6 1096 222 91 0 0 chr1 66991404 66991437 -130203995 + (CTGGGG)n Simple_repeat Simple_repeat 6 38 0 6 1096 688 252 13 13 chr1 66992520 66992669 -130202763 + B1_Mur2 SINE Alu 1 149 0 6 1096 937 93 150 13 chr1 66992696 66992833 -130202599 + B2_Mm1t SINE B2 1 160 -33 7 1096 508 26 26 26 chr1 66992833 66992911 -130202521 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 7 1096 937 93 150 13 chr1 66992911 66992926 -130202506 + B2_Mm1t SINE B2 161 174 -19 7 1096 454 270 23 86 chr1 66993121 66993295 -130202137 - RSINE1 SINE B4 -2 163 1 7 1096 287 260 194 20 chr1 66993524 66993622 -130201810 + B1_Mur3 SINE Alu 2 117 -32 7 1096 217 51 25 25 chr1 66993622 66993662 -130201770 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 7 1096 268 314 140 19 chr1 66993662 66993687 -130201745 + B1_Mur2 SINE Alu 118 148 -1 6 1096 289 215 48 0 chr1 66993820 66993891 -130201541 - ID4 SINE ID 0 83 2 7 1096 22 0 0 0 chr1 66993918 66993940 -130201492 + AT_rich Low_complexity Low_complexity 1 22 0 7 1096 225 0 0 0 chr1 66993943 66993968 -130201464 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1096 275 302 43 8 chr1 66994002 66994119 -130201313 - L1MA6 LINE L1 -101 6199 6079 7 1096 411 123 0 0 chr1 66994191 66994272 -130201160 + (TCTG)n Simple_repeat Simple_repeat 4 84 0 7 1096 363 289 11 22 chr1 66994272 66994364 -130201068 - PB1D10 SINE Alu -8 109 19 7 1096 775 153 220 6 chr1 66994412 66994589 -130200843 - B3 SINE B2 0 216 2 7 1096 982 167 214 40 chr1 66994783 66995082 -130200350 - Lx4B LINE L1 -4 7054 6704 7 1096 189 0 0 0 chr1 66995082 66995103 -130200329 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1096 2542 178 46 60 chr1 66995565 66996133 -130199299 - Lx5 LINE L1 -355 6695 6136 7 1096 292 309 26 42 chr1 66996761 66996950 -130198482 + L1MC3 LINE L1 7334 7519 -266 7 1096 605 277 19 45 chr1 66997072 66997227 -130198205 + RSINE1 SINE B4 1 151 -14 7 1096 396 0 0 0 chr1 66997228 66997272 -130198160 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1096 1480 139 5 0 chr1 66999501 66999724 -130195708 + URR1A DNA MER1_type 3 226 0 7 1096 603 51 0 0 chr1 67000595 67000674 -130194758 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1096 307 211 0 0 chr1 67001135 67001192 -130194240 + ORR1D2 LTR MaLR 1 57 -313 2 1096 224 323 114 36 chr1 67001671 67001838 -130193594 - MIRb SINE MIR -63 205 26 3 1096 330 314 56 19 chr1 67001955 67002062 -130193370 + RSINE1 SINE B4 17 127 -38 4 1096 4157 164 46 4 chr1 67002488 67003178 -130192254 - RMER6D LTR ERVK 0 720 2 5 1096 439 317 116 25 chr1 67004627 67004947 -130190485 + L1ME3B LINE L1 5599 5947 -293 6 1096 286 128 0 0 chr1 67004949 67004988 -130190444 + RMER6D LTR ERVK 1 39 -681 7 1096 532 157 0 136 chr1 67005003 67005093 -130190339 + MT2B LTR ERVL 186 259 -342 8 1096 214 284 14 43 chr1 67005093 67005163 -130190269 + B1_Mur3 SINE Alu 3 70 -79 9 1096 1963 140 44 36 chr1 67005172 67005535 -130189897 + RMER6C LTR ERVK 325 690 0 1 1096 192 77 0 0 chr1 67005588 67005614 -130189818 + (TTAGGG)n Simple_repeat Simple_repeat 6 31 0 1 1096 825 11 0 0 chr1 67006633 67006727 -130188705 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1096 218 75 0 48 chr1 67007993 67008035 -130187397 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1096 624 14 0 0 chr1 67008860 67008933 -130186499 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1096 25 0 0 0 chr1 67009220 67009245 -130186187 + AT_rich Low_complexity Low_complexity 1 25 0 1 1096 452 239 17 25 chr1 67009251 67009371 -130186061 - RMER30 DNA MER1_type -1 201 83 1 1096 232 196 20 0 chr1 67009474 67009525 -130185907 + GA-rich Low_complexity Low_complexity 1 52 0 1 1096 696 136 14 126 chr1 67009575 67009718 -130185714 - B1_Mur2 SINE Alu -1 148 22 1 1096 2421 136 36 20 chr1 67009722 67010114 -130185318 - RMER10B LTR ERVL 0 398 1 1 1096 1203 68 0 20 chr1 67010685 67010836 -130184596 + B1_Mus1 SINE Alu 1 148 0 2 1096 181 83 56 0 chr1 67010836 67010872 -130184560 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 1096 4901 73 0 8 chr1 67012069 67012727 -130182705 + L1_Mm LINE L1 2240 2892 -2991 2 1096 24 32 0 0 chr1 67012728 67012759 -130182673 + AT_rich Low_complexity Low_complexity 1 31 0 2 1096 19182 66 11 4 chr1 67012767 67016161 -130179271 - L1Md_F LINE L1 -2076 3807 389 2 1096 222 37 0 0 chr1 67016171 67016198 -130179234 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1096 1116 88 0 0 chr1 67016198 67016334 -130179098 - B1_Mus2 SINE Alu -9 138 3 2 1096 7273 83 47 3 chr1 67016334 67016636 -130178796 - L1VL4 LINE L1 -433 3126 2824 2 1096 404 37 19 0 chr1 67016636 67016690 -130178742 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1096 7273 83 47 3 chr1 67016690 67017440 -130177992 - L1VL4 LINE L1 -736 2823 2029 2 1096 6854 91 12 2 chr1 67017448 67018847 -130176585 - L1VL4 LINE L1 -2142 1417 6 2 1096 245 286 149 35 chr1 67018881 67018968 -130176464 - PB1D10 SINE Alu -20 97 1 2 1096 528 279 133 26 chr1 67019033 67019228 -130176204 + B3 SINE B2 1 216 0 3 1096 15292 21 0 0 chr1 67019239 67021667 -130173765 - L1Md_A LINE L1 0 6582 4155 3 1096 28 79 0 0 chr1 67021668 67021731 -130173701 + AT_rich Low_complexity Low_complexity 1 63 0 3 1096 3159 63 10 27 chr1 67022708 67023115 -130172317 + MTB LTR MaLR 1 400 0 3 1096 693 0 0 0 chr1 67024978 67025055 -130170377 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 1096 288 300 0 17 chr1 67025249 67025339 -130170093 - PB1 SINE Alu -229 85 1 3 1096 651 179 196 62 chr1 67025639 67025818 -130169614 - B3 SINE B2 -4 212 10 3 1096 604 194 0 0 chr1 67025982 67026080 -130169352 - PB1D9 SINE Alu -2 118 21 3 1096 2486 117 79 106 chr1 67026436 67026878 -130168554 - RLTR23 LTR ERV1 0 430 1 3 1096 386 235 0 0 chr1 67027098 67027166 -130168266 - B1_Mur1 SINE Alu -6 143 76 3 1096 2095 169 44 44 chr1 67027585 67027994 -130167438 + RMER10A LTR ERVL 1 410 -32 4 1096 878 43 9 0 chr1 67027994 67028109 -130167323 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 4 1096 2095 169 44 44 chr1 67028109 67028131 -130167301 + RMER10A LTR ERVL 411 432 -10 4 1096 297 70 53 0 chr1 67028133 67028190 -130167242 + (TCC)n Simple_repeat Simple_repeat 3 62 0 4 1096 282 56 0 0 chr1 67028187 67028223 -130167209 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1096 620 246 36 7 chr1 67028724 67028863 -130166569 + B1F SINE Alu 1 143 -6 4 1096 1251 282 3 30 chr1 67028912 67029170 -130166262 + B4A SINE B4 1 258 -34 4 1096 3316 60 178 9 chr1 67029170 67029608 -130165824 + RLTR1B LTR ERV1 1 512 0 4 1096 1251 282 3 30 chr1 67029608 67029649 -130165783 + B4A SINE B4 259 292 0 4 1096 1618 137 20 0 chr1 67030048 67030297 -130165135 + Lx4A LINE L1 6805 7058 0 4 1096 23 0 0 0 chr1 67030297 67030320 -130165112 + AT_rich Low_complexity Low_complexity 1 23 0 4 1096 554 239 0 9 chr1 67031586 67031715 -130163717 - B1_Mur1 SINE Alu -26 123 3 4 1096 550 292 39 45 chr1 67032715 67032894 -130162538 - MER47B DNA MER2_type -170 248 71 5 1096 215 0 0 62 chr1 67032917 67032949 -130162483 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1096 311 348 28 28 chr1 67033511 67033653 -130161779 - Arthur1C DNA Tip100 -212 151 10 5 1096 444 284 53 92 chr1 67033829 67034132 -130161300 - L1MC4a LINE L1 -10 7872 7582 5 1096 438 108 0 0 chr1 67034494 67034559 -130160873 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1096 286 310 69 14 chr1 67035024 67035168 -130160264 - MER5A DNA MER1_type 0 189 38 5 1096 674 264 181 0 chr1 67036240 67036422 -130159010 + B3 SINE B2 2 216 0 5 1096 364 281 90 94 chr1 67036435 67036604 -130158828 + Charlie4a DNA MER1_type 255 411 -97 5 1096 213 121 0 0 chr1 67036604 67036637 -130158795 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1096 364 281 90 94 chr1 67036637 67036722 -130158710 + Charlie4a DNA MER1_type 412 507 -1 5 1096 210 71 0 0 chr1 67037297 67037325 -130158107 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 5 1096 453 19 0 0 chr1 67037565 67037619 -130157813 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1096 531 0 0 0 chr1 67037996 67038055 -130157377 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1096 216 86 0 0 chr1 67038180 67038215 -130157217 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1096 856 274 64 38 chr1 67038404 67038462 -130156970 + B4A SINE B4 1 52 -240 6 1096 2749 146 36 16 chr1 67038462 67038906 -130156526 - RLTR11B LTR ERVK 0 453 1 6 1096 856 274 64 38 chr1 67038906 67039113 -130156319 + B4A SINE B4 53 272 -20 6 1096 21 0 0 0 chr1 67040022 67040043 -130155389 + AT_rich Low_complexity Low_complexity 1 21 0 6 1096 1035 283 13 59 chr1 67040174 67040478 -130154954 + B4A SINE B4 1 290 -2 6 1096 870 263 140 61 chr1 67040834 67041539 -130153893 - L1M3d LINE L1 -3224 2916 2156 6 1096 231 292 121 54 chr1 67042108 67042332 -130153100 - L1M3d LINE L1 -4531 1536 1298 6 1096 393 22 0 0 chr1 67042863 67042909 -130152523 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1096 499 288 78 14 chr1 67043198 67043339 -130152093 - ID_B1 SINE B4 0 224 75 6 1096 424 201 201 56 chr1 67044761 67044940 -130150492 - Lx8 LINE L1 0 7473 7269 7 1096 218 222 47 16 chr1 67049563 67049627 -130145805 - ID4 SINE ID -10 73 8 7 1096 389 219 117 14 chr1 67049642 67049751 -130145681 - PB1 SINE Alu -3 124 12 7 1096 28 0 0 0 chr1 67050190 67050218 -130145214 + AT_rich Low_complexity Low_complexity 1 28 0 7 1096 225 0 0 0 chr1 67050529 67050554 -130144878 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 7 1096 736 255 34 53 chr1 67050561 67050768 -130144664 - ID_B1 SINE B4 -19 205 3 7 1096 1492 218 89 21 chr1 67051713 67052093 -130143339 + MTD LTR MaLR 10 415 -4 7 1096 216 0 0 0 chr1 67052142 67052166 -130143266 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1096 567 112 0 0 chr1 67052166 67052273 -130143159 + (GA)n Simple_repeat Simple_repeat 2 108 0 7 1096 591 264 32 38 chr1 67052443 67052628 -130142804 - B4A SINE B4 0 292 109 7 1096 495 296 143 65 chr1 67052635 67053181 -130142251 - L1MB5 LINE L1 -50 6124 5515 8 1096 852 95 3 17 chr1 67054253 67054378 -130141054 + B1_Mm SINE Alu 21 147 0 8 1096 273 246 54 170 chr1 67054270 67054417 -130141015 + B4 SINE B4 127 256 -36 8 1096 198 0 0 0 chr1 67054976 67054998 -130140434 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 8 1096 727 305 108 22 chr1 67057228 67057590 -130137842 + L1MD2 LINE L1 23 415 -6132 8 1096 342 174 21 32 chr1 67057590 67057685 -130137747 + CT-rich Low_complexity Low_complexity 1 94 0 8 1096 762 223 42 52 chr1 67059055 67059268 -130136164 - B3 SINE B2 0 216 6 8 1096 820 118 8 8 chr1 67059713 67059841 -130135591 - B1_Mur3 SINE Alu 0 149 22 8 1096 288 212 0 0 chr1 67059985 67060051 -130135381 + (TA)n Simple_repeat Simple_repeat 2 67 0 8 1096 26 50 0 0 chr1 67060051 67060091 -130135341 + AT_rich Low_complexity Low_complexity 1 40 0 8 1096 236 265 70 35 chr1 67060358 67060444 -130134988 + ID_B1 SINE B4 81 169 -55 9 1096 495 60 0 0 chr1 67061933 67062000 -130133432 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 9 1096 1105 82 7 0 chr1 67062002 67062148 -130133284 - B1_Mus2 SINE Alu 0 147 1 9 1096 29 47 0 0 chr1 67062154 67062197 -130133235 + AT_rich Low_complexity Low_complexity 1 43 0 9 1096 261 182 0 68 chr1 67062286 67062345 -130133087 + RLTR17 LTR ERVK 638 692 0 9 1096 2529 212 20 48 chr1 67062391 67063054 -130132378 + RMER3D-int LTR ERVK 2197 2840 -2 9 1096 1829 171 42 56 chr1 67063057 67063269 -130132163 + RLTR31A_Mm LTR ERVK 2 229 -355 9 1096 3447 28 5 0 chr1 67063269 67063663 -130131769 + MTA_Mm LTR MaLR 1 396 0 9 1096 1829 176 75 68 chr1 67063663 67063983 -130131449 + RLTR31A_Mm LTR ERVK 230 561 0 9 1096 285 100 0 0 chr1 67064032 67064082 -130131350 + (A)n Simple_repeat Simple_repeat 1 50 0 9 1096 564 280 38 0 chr1 67064409 67064541 -130130891 - B1F SINE Alu 0 149 13 9 1096 2036 279 82 35 chr1 67065398 67066133 -130129299 - Lx8 LINE L1 -248 7225 6457 9 1096 273 311 57 0 chr1 67066574 67066696 -130128736 - MER2 DNA MER2_type -12 333 205 1 1096 4643 146 12 5 chr1 67069972 67070775 -130124657 + L1_Mm LINE L1 4643 5484 -819 1 1096 3201 49 23 0 chr1 67071144 67071531 -130123901 - MTA_Mm LTR MaLR 0 396 1 1 1096 26 30 0 0 chr1 67071806 67071839 -130123593 + AT_rich Low_complexity Low_complexity 1 33 0 1 1096 561 261 6 18 chr1 67071935 67072099 -130123333 - RSINE1 SINE B4 0 165 4 1 1096 396 55 0 0 chr1 67073971 67074026 -130121406 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1096 434 248 11 47 chr1 67074106 67074253 -130121179 - B4A SINE B4 -87 137 1 1 1096 486 284 112 47 chr1 67076606 67076864 -130118568 - B4A SINE B4 -15 277 3 1 1096 396 324 156 37 chr1 67077883 67078204 -130117228 + MLT1J LTR MaLR 103 461 -51 1 1096 578 197 57 16 chr1 67079771 67079895 -130115537 + B1F1 SINE Alu 21 149 0 1 1096 464 282 0 8 chr1 67080999 67081117 -130114315 + PB1D10 SINE Alu 1 117 0 1 1096 720 173 21 14 chr1 67081137 67081278 -130114154 - B1_Mus1 SINE Alu -4 144 3 1 1096 796 244 34 5 chr1 67081495 67081701 -130113731 - B3 SINE B2 -4 212 1 1 1096 290 248 171 21 chr1 67081958 67082098 -130113334 - RSINE1 SINE B4 0 165 5 1 1096 373 296 18 18 chr1 67082130 67082240 -130113192 + B4 SINE B4 3 112 -180 1 1096 562 292 55 45 chr1 67082295 67082496 -130112936 + B4 SINE B4 90 292 0 1 1096 384 262 19 0 chr1 67083226 67083333 -130112099 + B1_Mus2 SINE Alu 38 146 -1 1 1096 434 234 68 51 chr1 67083359 67083476 -130111956 + PB1D7 SINE Alu 1 119 -1 1 1096 209 125 0 24 chr1 67083794 67083835 -130111597 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1 1096 743 32 11 0 chr1 67084197 67084291 -130111141 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 1096 435 193 0 0 chr1 67084341 67084424 -130111008 + PB1D10 SINE Alu 13 95 -22 1 1096 677 184 7 78 chr1 67085909 67086062 -130109370 + B1_Mus1 SINE Alu 6 147 -1 1 1096 493 262 78 0 chr1 67086443 67086584 -130108848 + B3A SINE B2 2 153 -45 1 1096 513 0 0 0 chr1 67086593 67086650 -130108782 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1096 209 196 20 0 chr1 67086650 67086701 -130108731 + GA-rich Low_complexity Low_complexity 2 53 0 1 1096 183 42 0 0 chr1 67086879 67086903 -130108529 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1096 557 289 35 22 chr1 67087470 67087700 -130107732 - B4A SINE B4 -58 234 2 1 1096 639 39 0 0 chr1 67087710 67087788 -130107644 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 1 1096 257 319 45 69 chr1 67087806 67088008 -130107424 - L1M5 LINE L1 -545 5649 5453 1 1096 239 219 50 50 chr1 67088758 67088859 -130106573 - MLT1J2 LTR MaLR -283 165 65 1 1096 440 208 79 0 chr1 67089917 67090018 -130105414 - RSINE1 SINE B4 -53 112 4 1 1096 1166 148 114 0 chr1 67091009 67091211 -130104221 + URR1B DNA MER1_type 1 225 0 1 1096 767 138 7 0 chr1 67091264 67091416 -130104016 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 1096 267 190 0 0 chr1 67091509 67091567 -130103865 + T-rich Low_complexity Low_complexity 1 58 0 1 1096 429 20 0 0 chr1 67092459 67092509 -130102923 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1096 263 180 60 7 chr1 67092549 67092700 -130102732 + (TA)n Simple_repeat Simple_repeat 1 159 0 1 1096 21 82 0 0 chr1 67092703 67092752 -130102680 + AT_rich Low_complexity Low_complexity 1 49 0 1 1096 205 120 19 39 chr1 67092770 67092822 -130102610 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 1 1096 1921 257 208 19 chr1 67092837 67093859 -130101573 - Lx8 LINE L1 -2 7471 6256 1 1096 260 307 0 0 chr1 67095309 67095384 -130100048 - MTD LTR MaLR -291 128 54 1 1096 207 286 14 14 chr1 67097556 67097627 -130097805 + GA-rich Low_complexity Low_complexity 4 74 0 1 1096 205 231 0 19 chr1 67097772 67097825 -130097607 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1096 934 291 46 14 chr1 67098981 67099316 -130096116 + MTE2a LTR MaLR 18 378 -1 1 1096 1857 162 100 20 chr1 67099837 67100246 -130095186 - RMER10A LTR ERVL 0 442 1 1 1096 694 143 22 22 chr1 67100693 67100872 -130094560 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1096 307 228 123 14 chr1 67101205 67101343 -130094089 - Charlie4 DNA MER1_type -6 1955 1803 1 1096 450 0 0 0 chr1 67102026 67102076 -130093356 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1096 22 0 0 0 chr1 67103511 67103533 -130091899 + AT_rich Low_complexity Low_complexity 1 22 0 1 1096 306 0 0 0 chr1 67104287 67104321 -130091111 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1096 322 330 9 0 chr1 67104891 67105000 -130090432 - L2 LINE L2 -493 2926 2817 1 1096 2688 165 169 17 chr1 67105012 67105272 -130090160 + RMER6C LTR ERVK 1 344 -346 1 1096 189 0 0 0 chr1 67105272 67105293 -130090139 + (CAGTG)n Simple_repeat Simple_repeat 1 21 0 1 1096 2688 165 169 17 chr1 67105293 67105631 -130089801 + RMER6C LTR ERVK 345 690 0 1 1096 181 264 26 53 chr1 67105681 67105757 -130089675 + L2a LINE L2 2994 3067 -359 1 1096 447 272 19 159 chr1 67106102 67106360 -130089072 + RLTR16 LTR ERVK 24 245 -260 1 1096 793 156 0 28 chr1 67107069 67107214 -130088218 - URR1A DNA MER1_type -4 222 82 1 1096 370 247 12 0 chr1 67107565 67107650 -130087782 - URR1A DNA MER1_type -136 90 5 1 1097 320 335 13 72 chr1 67109305 67109540 -130085892 - MIRb SINE MIR -9 259 39 1 1097 207 0 0 0 chr1 67111457 67111480 -130083952 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1097 333 322 22 47 chr1 67113109 67113428 -130082004 - L1ME1 LINE L1 -240 5939 5629 1 1097 362 249 227 5 chr1 67113648 67114040 -130081392 - L1MEc LINE L1 -4759 1641 1163 1 1097 3758 211 55 67 chr1 67114001 67115331 -130080101 - RMER1A Other Other -1 1029 45 1 1097 195 42 0 0 chr1 67115476 67115500 -130079932 + (ATTTG)n Simple_repeat Simple_repeat 2 25 0 1 1097 2442 95 3 0 chr1 67115521 67115847 -130079585 - ORR1A2 LTR MaLR 0 327 1 1 1097 847 109 7 7 chr1 67116062 67116201 -130079231 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 1 1097 369 0 0 0 chr1 67116357 67116398 -130079034 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1097 23045 95 14 1 chr1 67116427 67119757 -130075675 - L1_Mus1 LINE L1 -327 6240 2888 1 1097 899 18 0 9 chr1 67119757 67119867 -130075565 + (TTTC)n Simple_repeat Simple_repeat 3 111 0 1 1097 23045 102 13 1 chr1 67119867 67120427 -130075005 - L1_Mus1 LINE L1 -2996 2887 2307 1 1097 212 0 36 0 chr1 67120764 67120792 -130074640 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1097 400 227 31 83 chr1 67120982 67121078 -130074354 - B3 SINE B2 -125 91 1 1 1097 603 278 80 37 chr1 67121079 67121539 -130073893 - L1MB7 LINE L1 -244 5940 5461 1 1097 417 141 0 0 chr1 67121570 67121641 -130073791 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1097 328 256 21 43 chr1 67121670 67121764 -130073668 - B3A SINE B2 -80 118 27 1 1097 231 114 0 0 chr1 67121769 67121804 -130073628 + (CAAT)n Simple_repeat Simple_repeat 3 37 0 1 1097 2541 195 48 0 chr1 67121826 67122364 -130073068 - Lx5 LINE L1 -67 6983 6420 1 1097 207 0 0 0 chr1 67122791 67122814 -130072618 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1097 1373 198 22 10 chr1 67122814 67123125 -130072307 - Lx LINE L1 -32 6622 6308 1 1097 299 281 35 33 chr1 67123125 67123291 -130072141 - B4 SINE B4 -129 163 1 1 1097 274 286 34 45 chr1 67123302 67123481 -130071951 - L1MB7 LINE L1 -825 5321 5145 1 1097 204 67 0 0 chr1 67124174 67124204 -130071228 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1097 278 360 13 0 chr1 67125015 67125090 -130070342 - ID4 SINE ID -5 78 3 1 1097 187 310 69 0 chr1 67125131 67125189 -130070243 - L2a LINE L2 -61 3365 3304 1 1097 298 284 98 0 chr1 67125641 67125743 -130069689 - MamGypLTR1a LTR Gypsy -40 744 633 1 1097 203 212 11 34 chr1 67126525 67126613 -130068819 + GA-rich Low_complexity Low_complexity 3 88 0 1 1097 250 304 19 11 chr1 67126809 67126928 -130068504 + MIRb SINE MIR 115 239 -29 1 1097 232 225 219 62 chr1 67127016 67127144 -130068288 + RMER13B LTR ERVK 759 906 -2 1 1097 960 290 53 22 chr1 67127144 67127491 -130067941 - MER31A LTR ERV1 -21 464 107 1 1097 674 105 9 0 chr1 67127510 67127615 -130067817 + (TTCCC)n Simple_repeat Simple_repeat 5 110 0 1 1097 298 136 45 0 chr1 67127640 67127706 -130067726 + CT-rich Low_complexity Low_complexity 4 72 0 1 1097 1054 109 0 33 chr1 67127706 67127858 -130067574 - B1_Mus1 SINE Alu 0 148 2 1 1097 310 286 9 45 chr1 67127859 67127969 -130067463 - MER31A LTR ERV1 -378 107 2 1 1097 276 360 34 34 chr1 67128105 67128223 -130067209 + PB1D9 SINE Alu 1 118 -2 1 1097 8134 39 0 0 chr1 67128326 67129797 -130065635 - L1Md_T LINE L1 0 6582 5112 1 1097 728 78 19 0 chr1 67129791 67129894 -130065538 - MusHAL1 LINE L1 -1730 982 878 1 1097 2289 262 36 30 chr1 67129894 67130453 -130064979 + RMER13B LTR ERVK 347 908 0 1 1097 22 35 0 0 chr1 67130607 67130636 -130064796 + AT_rich Low_complexity Low_complexity 1 29 0 1 1097 399 56 0 0 chr1 67131735 67131789 -130063643 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 1 1097 2160 165 50 5 chr1 67131791 67132174 -130063258 - Lx4B LINE L1 -12 7046 6647 1 1097 189 0 0 0 chr1 67132331 67132352 -130063080 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1097 1064 233 107 93 chr1 67132467 67132812 -130062620 - ORR1E LTR MaLR -7 352 3 1 1097 975 63 0 0 chr1 67133301 67133428 -130062004 + (GA)n Simple_repeat Simple_repeat 2 128 0 1 1097 7281 98 5 15 chr1 67133882 67135290 -130060142 + Lx LINE L1 5261 6646 -8 1 1097 306 0 0 0 chr1 67135401 67135435 -130059997 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 1097 794 169 23 0 chr1 67135435 67135565 -130059867 - B1_Mur4 SINE Alu -12 138 6 1 1097 4218 178 66 16 chr1 67136030 67136895 -130058537 + RMER13B LTR ERVK 1 908 0 1 1097 987 281 37 138 chr1 67136902 67137268 -130058164 - MER31A LTR ERV1 -20 465 102 2 1097 928 125 12 0 chr1 67137268 67137428 -130058004 + (TTCCC)n Simple_repeat Simple_repeat 5 166 0 2 1097 987 281 37 138 chr1 67137428 67137465 -130057967 - MER31A LTR ERV1 -384 101 97 2 1097 1009 96 0 70 chr1 67137465 67137478 -130057954 - B1_Mus1 SINE Alu -1 147 137 2 1097 1212 106 0 0 chr1 67137478 67137657 -130057775 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2 1097 531 0 0 0 chr1 67137657 67137716 -130057716 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2 1097 1009 96 0 70 chr1 67137716 67137858 -130057574 - B1_Mus1 SINE Alu -12 136 3 2 1097 987 281 37 138 chr1 67137858 67137969 -130057463 - MER31A LTR ERV1 -389 96 2 2 1097 225 360 35 0 chr1 67138105 67138219 -130057213 + PB1D9 SINE Alu 1 118 -2 2 1097 217 224 16 49 chr1 67138251 67138312 -130057120 - MER5A DNA MER1_type -80 109 51 2 1097 408 20 0 0 chr1 67140307 67140356 -130055076 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1097 718 302 86 48 chr1 67140359 67140627 -130054805 - B4 SINE B4 -14 278 1 2 1097 5084 47 0 22 chr1 67140643 67141291 -130054141 - L1Md_F2 LINE L1 -12 6570 5937 2 1097 235 359 68 34 chr1 67141703 67141879 -130053553 - MIRb SINE MIR -28 240 59 2 1097 387 141 0 0 chr1 67141897 67141961 -130053471 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1097 902 296 65 40 chr1 67142020 67142075 -130053357 - B4A SINE B4 0 292 241 2 1097 2235 182 17 7 chr1 67142075 67142490 -130052942 - MTC LTR MaLR 0 421 3 2 1097 902 296 65 40 chr1 67142490 67142712 -130052720 - B4A SINE B4 -52 240 8 2 1097 225 370 35 53 chr1 67144259 67144373 -130051059 - MamGypLTR2c LTR Gypsy -645 423 312 2 1097 711 305 76 27 chr1 67144910 67145173 -130050259 - B4A SINE B4 -2 290 15 2 1097 946 54 35 18 chr1 67146743 67146912 -130048520 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 2 1097 517 61 24 0 chr1 67146925 67147007 -130048425 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 2 1097 22 0 0 0 chr1 67147311 67147333 -130048099 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 411 266 53 0 chr1 67147464 67147558 -130047874 - PB1D10 SINE Alu 0 117 19 2 1097 267 314 86 31 chr1 67148473 67148601 -130046831 + MIR SINE MIR 88 222 -40 2 1097 219 69 0 0 chr1 67148674 67148703 -130046729 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1097 731 150 63 0 chr1 67148703 67148830 -130046602 - B1_Mus2 SINE Alu -8 139 5 2 1097 239 294 82 0 chr1 67148880 67148965 -130046467 - LTR81A LTR ERV1? 0 1350 1259 2 1097 480 234 40 0 chr1 67149639 67149763 -130045669 - RSINE1 SINE B4 -29 136 8 2 1097 217 387 8 16 chr1 67149799 67149925 -130045507 - MIRb SINE MIR -48 220 96 2 1097 338 0 24 0 chr1 67151207 67151249 -130044183 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1097 639 171 47 31 chr1 67151281 67151408 -130044024 - B1_Mus1 SINE Alu -16 132 4 2 1097 197 394 71 44 chr1 67151412 67151638 -130043794 + L2 LINE L2 1098 1329 -2090 2 1097 583 246 64 39 chr1 67151794 67152027 -130043405 - Lx8 LINE L1 0 7473 7235 2 1097 246 239 0 0 chr1 67152480 67152551 -130042881 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1097 6429 41 1 25 chr1 67152551 67153398 -130042034 - IAPEz-int LTR ERVK -2 6479 5653 2 1097 2504 76 0 3 chr1 67153393 67153736 -130041696 - IAPEz-int LTR ERVK -4781 1700 1359 2 1097 3280 53 22 16 chr1 67153736 67154302 -130041130 - IAPEz-int LTR ERVK -5819 662 168 2 1097 230 273 0 0 chr1 67154302 67154346 -130041086 - RLTR27 LTR ERVK -34 275 232 2 1097 284 29 0 0 chr1 67154349 67154383 -130041049 - IAPEz-int LTR ERVK -7323 258 225 2 1097 229 267 0 0 chr1 67154383 67154428 -130041004 - RLTR27 LTR ERVK -34 275 231 2 1097 412 128 114 105 chr1 67154428 67154533 -130040899 - IAPEz-int LTR ERVK -6358 123 18 2 1097 290 68 0 0 chr1 67154517 67154561 -130040871 - IAPEz-int LTR ERVK -1931 56 13 2 1097 262 95 95 0 chr1 67154588 67154651 -130040781 - IAPEz-int LTR ERVK -1906 81 13 2 1097 289 95 76 63 chr1 67154662 67154741 -130040691 - IAPEz-int LTR ERVK -1905 82 3 2 1097 2046 97 58 203 chr1 67154743 67155299 -130040133 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1097 444 223 28 6 chr1 67155321 67155497 -130039935 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1097 685 137 22 33 chr1 67155520 67155701 -130039731 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1097 386 326 101 45 chr1 67156640 67157210 -130038222 - MLT-int LTR MaLR -1003 732 27 2 1097 637 102 19 0 chr1 67157641 67157749 -130037683 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 2 1097 35 24 0 0 chr1 67159498 67159540 -130035892 + AT_rich Low_complexity Low_complexity 1 42 0 2 1097 192 111 0 0 chr1 67159794 67159830 -130035602 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1097 22 0 0 0 chr1 67161139 67161161 -130034271 + AT_rich Low_complexity Low_complexity 1 22 0 2 1097 2374 102 34 6 chr1 67161161 67161516 -130033916 - Lx3A LINE L1 -11 6970 6606 2 1097 244 174 0 42 chr1 67161815 67161863 -130033569 + ZP3AR Satellite Satellite 37 82 -130 2 1097 407 231 20 90 chr1 67161823 67161897 -130033535 + ID SINE ID 1 72 -152 2 1097 594 0 0 0 chr1 67161897 67161963 -130033469 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1097 407 231 20 90 chr1 67161963 67161988 -130033444 + ID_B1 SINE B4 73 93 -131 2 1097 526 252 49 56 chr1 67162224 67162367 -130033065 - ID_B1 SINE B4 -1 223 82 2 1097 312 91 0 0 chr1 67162863 67162907 -130032525 + (CAG)n Simple_repeat Simple_repeat 1 44 0 2 1097 181 269 0 0 chr1 67165934 67165986 -130029446 + L2a LINE L2 3209 3260 -166 2 1097 435 68 0 0 chr1 67166468 67166527 -130028905 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 2 1097 245 320 10 10 chr1 67167460 67167558 -130027874 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 2 1097 443 100 14 0 chr1 67167757 67167827 -130027605 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1097 498 0 0 0 chr1 67170881 67170943 -130024489 - L1Md_T LINE L1 0 6582 6521 2 1097 252 200 0 0 chr1 67171113 67171173 -130024259 + G-rich Low_complexity Low_complexity 3 62 0 2 1097 22 35 0 0 chr1 67172847 67172876 -130022556 + AT_rich Low_complexity Low_complexity 1 29 0 2 1097 1373 278 68 52 chr1 67175820 67176243 -130019189 - Lx6 LINE L1 -5 7455 7021 2 1097 459 0 0 0 chr1 67176243 67176294 -130019138 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1097 216 0 0 0 chr1 67176296 67176320 -130019112 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 1097 1199 55 0 0 chr1 67176320 67176466 -130018966 - B1_Mus2 SINE Alu -1 146 1 2 1097 1373 278 68 52 chr1 67176466 67176539 -130018893 - Lx6 LINE L1 -440 7020 6948 2 1097 770 293 77 22 chr1 67178102 67178374 -130017058 - B4A SINE B4 0 292 6 2 1097 306 322 17 17 chr1 67178756 67178873 -130016559 - PB1D10 SINE Alu 0 117 1 2 1097 1025 58 7 0 chr1 67179216 67179353 -130016079 + (TTCTC)n Simple_repeat Simple_repeat 4 141 0 2 1097 976 69 0 0 chr1 67179368 67179498 -130015934 - B1_Mm SINE Alu 0 147 18 2 1097 387 0 0 0 chr1 67179498 67179541 -130015891 + (CCA)n Simple_repeat Simple_repeat 2 44 0 2 1097 187 297 0 81 chr1 67180043 67180142 -130015290 + MIR SINE MIR 110 200 -62 2 1097 23 0 0 0 chr1 67180579 67180602 -130014830 + AT_rich Low_complexity Low_complexity 1 23 0 2 1097 289 361 71 4 chr1 67182261 67182500 -130012932 - L2a LINE L2 -60 3366 3112 2 1097 678 217 93 0 chr1 67182643 67182804 -130012628 - Lx5 LINE L1 0 7050 6875 2 1097 23 0 0 0 chr1 67183181 67183204 -130012228 + AT_rich Low_complexity Low_complexity 1 23 0 2 1097 27 29 0 0 chr1 67184621 67184655 -130010777 + AT_rich Low_complexity Low_complexity 1 34 0 2 1097 286 254 87 29 chr1 67185146 67185284 -130010148 - L1MC5 LINE L1 -114 7847 7702 2 1097 297 347 8 25 chr1 67185493 67185614 -130009818 - L4 LINE RTE -557 1472 1354 2 1097 531 112 0 0 chr1 67186950 67187030 -130008402 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1097 598 295 29 7 chr1 67187032 67187172 -130008260 - B3A SINE B2 -52 146 4 2 1097 300 111 0 0 chr1 67188639 67188684 -130006748 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1097 21 0 0 0 chr1 67189191 67189212 -130006220 + AT_rich Low_complexity Low_complexity 1 21 0 2 1097 202 0 59 29 chr1 67190913 67190947 -130004485 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1097 306 221 24 12 chr1 67191493 67191662 -130003770 + CT-rich Low_complexity Low_complexity 2 172 0 2 1097 182 167 0 27 chr1 67191872 67191909 -130003523 - L2c LINE L2 -9 3378 3343 2 1097 181 43 0 0 chr1 67192630 67192653 -130002779 - L2c LINE L2 -19 3368 3346 2 1097 412 321 92 0 chr1 67193292 67193476 -130001956 + MER2 DNA MER2_type 131 331 -14 2 1097 809 301 5 14 chr1 67194768 67194980 -130000452 + B4 SINE B4 1 210 -82 2 1097 561 254 94 31 chr1 67196907 67197098 -129998334 + MER2 DNA MER2_type 93 295 -50 2 1097 341 318 31 31 chr1 67197218 67197377 -129998055 - RSINE1 SINE B4 -4 161 3 2 1097 1170 90 0 0 chr1 67197672 67197838 -129997594 - L1_Mus2 LINE L1 0 6566 6401 2 1097 27 62 0 0 chr1 67199178 67199226 -129996206 + AT_rich Low_complexity Low_complexity 1 48 0 2 1097 209 149 43 0 chr1 67199461 67199508 -129995924 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2 1097 378 0 0 0 chr1 67199551 67199593 -129995839 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1097 213 180 0 0 chr1 67199952 67200002 -129995430 + CT-rich Low_complexity Low_complexity 1 50 0 2 1097 1587 84 0 39 chr1 67200155 67200389 -129995043 - L1_Mus1 LINE L1 0 6567 6343 2 1097 1536 22 0 0 chr1 67200954 67201134 -129994298 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1097 2624 277 68 34 chr1 67201156 67202131 -129993301 - Lx8 LINE L1 -1 7472 6465 2 1097 576 0 0 0 chr1 67202514 67202578 -129992854 + (CATAA)n Simple_repeat Simple_repeat 5 68 0 2 1097 626 365 25 29 chr1 67204606 67204885 -129990547 - B4A SINE B4 -9 283 6 2 1097 23 0 0 0 chr1 67205179 67205202 -129990230 + AT_rich Low_complexity Low_complexity 1 23 0 2 1097 1074 69 11 22 chr1 67206054 67206232 -129989200 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 2 1097 726 44 0 0 chr1 67206233 67206323 -129989109 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 2 1097 22 35 0 0 chr1 67206625 67206654 -129988778 + AT_rich Low_complexity Low_complexity 1 29 0 2 1097 414 0 0 0 chr1 67207087 67207133 -129988299 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1097 783 306 157 10 chr1 67207716 67208170 -129987262 - Lx8 LINE L1 -5 7468 6944 2 1097 480 35 0 0 chr1 67208170 67208228 -129987204 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1097 783 306 157 10 chr1 67208228 67208269 -129987163 - Lx8 LINE L1 -530 6943 6901 2 1097 582 330 0 21 chr1 67208292 67208484 -129986948 + Lx8 LINE L1 6726 6913 -560 2 1097 21 0 0 0 chr1 67208839 67208860 -129986572 + AT_rich Low_complexity Low_complexity 1 21 0 2 1097 1163 68 0 0 chr1 67209538 67209685 -129985747 - B1_Mm SINE Alu 0 147 1 3 1097 432 214 0 55 chr1 67210311 67210494 -129984938 + C-rich Low_complexity Low_complexity 5 177 0 3 1097 226 163 0 75 chr1 67210494 67210547 -129984885 + CT-rich Low_complexity Low_complexity 1 49 0 3 1097 226 343 141 0 chr1 67211184 67211335 -129984097 + MIRc SINE MIR 22 197 -65 3 1097 471 295 19 48 chr1 67212602 67212812 -129982620 - B3 SINE B2 -11 205 2 3 1097 477 0 0 0 chr1 67213701 67213754 -129981678 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1097 417 39 0 0 chr1 67213754 67213804 -129981628 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1097 468 0 0 0 chr1 67214604 67214656 -129980776 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1097 839 59 8 0 chr1 67214656 67214773 -129980659 + (GA)n Simple_repeat Simple_repeat 1 119 0 3 1097 26 64 0 0 chr1 67215601 67215648 -129979784 + AT_rich Low_complexity Low_complexity 1 47 0 3 1097 499 273 9 0 chr1 67218106 67218216 -129977216 - B3 SINE B2 -101 115 5 3 1097 351 0 0 0 chr1 67218980 67219019 -129976413 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1097 282 254 128 24 chr1 67220133 67220258 -129975174 + MIR SINE MIR 6 143 -125 3 1097 1456 70 18 40 chr1 67221301 67221523 -129973909 - L1Md_F2 LINE L1 -13 6569 6353 3 1097 430 161 0 21 chr1 67221577 67221672 -129973760 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1097 249 200 42 14 chr1 67221741 67221812 -129973620 + (CATATA)n Simple_repeat Simple_repeat 1 73 0 3 1097 707 269 35 90 chr1 67221874 67222164 -129973268 + B4A SINE B4 1 274 -18 3 1097 21 0 0 0 chr1 67223883 67223904 -129971528 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 22 56 0 0 chr1 67226922 67226958 -129968474 + AT_rich Low_complexity Low_complexity 1 36 0 3 1097 312 91 0 0 chr1 67229529 67229573 -129965859 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1097 601 281 13 0 chr1 67231613 67231766 -129963666 - ID_B1 SINE B4 0 224 70 3 1097 26 0 0 0 chr1 67231883 67231909 -129963523 + AT_rich Low_complexity Low_complexity 1 26 0 3 1097 21 36 0 0 chr1 67231955 67231983 -129963449 + AT_rich Low_complexity Low_complexity 1 28 0 3 1097 198 374 25 34 chr1 67232657 67232776 -129962656 - MIRb SINE MIR -113 155 38 3 1097 392 243 97 91 chr1 67233261 67233415 -129962017 - RSINE1 SINE B4 0 165 11 3 1097 234 0 0 0 chr1 67233737 67233763 -129961669 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 3 1097 216 0 0 0 chr1 67234095 67234119 -129961313 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1097 536 198 37 9 chr1 67234119 67234226 -129961206 - PB1D9 SINE Alu -9 111 2 3 1097 656 215 45 23 chr1 67235201 67235334 -129960098 - B1_Mur3 SINE Alu -11 138 3 3 1097 250 343 14 0 chr1 67235519 67235589 -129959843 + ID4_ SINE ID 11 81 -2 3 1097 252 0 0 0 chr1 67236665 67236693 -129958739 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 1097 1134 184 27 9 chr1 67237601 67237820 -129957612 - URR1B DNA MER1_type 0 225 3 3 1097 241 270 135 68 chr1 67239065 67239228 -129956204 + MER3 DNA MER1_type 36 209 0 3 1098 861 242 4 57 chr1 67240149 67240377 -129955055 - B3 SINE B2 0 216 1 3 1098 240 149 0 0 chr1 67240417 67240464 -129954968 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 3 1098 204 254 169 0 chr1 67240933 67240992 -129954440 - L2a LINE L2 -1 3425 3357 3 1098 187 277 0 41 chr1 67241045 67241094 -129954338 + L2 LINE L2 2841 2887 -532 3 1098 441 167 0 0 chr1 67241402 67241504 -129953928 + GA-rich Low_complexity Low_complexity 1 102 0 3 1098 214 328 72 79 chr1 67243748 67243887 -129951545 - MIR SINE MIR -65 143 5 3 1098 1953 209 22 5 chr1 67246242 67246646 -129948786 - MTD LTR MaLR -8 411 1 3 1098 237 222 0 0 chr1 67247479 67247542 -129947890 + CT-rich Low_complexity Low_complexity 2 64 0 3 1098 811 149 7 0 chr1 67248513 67248654 -129946778 - URR1B DNA MER1_type -2 223 82 3 1098 1148 76 0 0 chr1 67248649 67248806 -129946626 - B2_Mm2 SINE B2 -35 160 4 3 1098 318 243 14 14 chr1 67248808 67248879 -129946553 - URR1B DNA MER1_type -143 82 12 3 1098 277 249 102 37 chr1 67249266 67249398 -129946034 + MIRc SINE MIR 109 231 -31 3 1098 226 256 73 113 chr1 67249535 67249685 -129945747 + Arthur1 DNA Tip100 1520 1663 -2284 3 1098 269 232 11 0 chr1 67250254 67250349 -129945083 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 1098 250 325 77 31 chr1 67254775 67254905 -129940527 + B3A SINE B2 57 192 -6 3 1098 285 267 40 13 chr1 67257294 67257370 -129938062 - ID SINE ID -141 83 6 3 1098 521 88 12 0 chr1 67257910 67257990 -129937442 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1098 310 345 76 41 chr1 67259297 67259469 -129935963 - MER5A DNA MER1_type -9 180 3 3 1098 233 54 0 26 chr1 67261296 67261315 -129934117 + (TA)n Simple_repeat Simple_repeat 2 20 0 3 1098 396 59 0 0 chr1 67261315 67261366 -129934066 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1098 233 54 0 26 chr1 67261366 67261384 -129934048 + (TA)n Simple_repeat Simple_repeat 1 17 0 3 1098 24 0 0 0 chr1 67262539 67262563 -129932869 + AT_rich Low_complexity Low_complexity 1 24 0 3 1098 1237 177 0 74 chr1 67262761 67262908 -129932524 + URR1A DNA MER1_type 1 141 -85 3 1098 1332 96 0 26 chr1 67262908 67263100 -129932332 + B2_Mm2 SINE B2 2 188 -7 3 1098 1237 177 0 74 chr1 67263100 67263196 -129932236 + URR1A DNA MER1_type 142 226 0 3 1098 22 80 0 0 chr1 67263462 67263512 -129931920 + AT_rich Low_complexity Low_complexity 1 50 0 3 1098 200 238 19 56 chr1 67266951 67267058 -129928374 + T-rich Low_complexity Low_complexity 2 104 0 3 1098 671 317 91 28 chr1 67267497 67267815 -129927617 - Lx8 LINE L1 -30 7443 7106 3 1098 23 33 0 0 chr1 67268941 67268971 -129926461 + AT_rich Low_complexity Low_complexity 1 30 0 3 1098 213 233 0 48 chr1 67269895 67269958 -129925474 + (TATG)n Simple_repeat Simple_repeat 1 60 0 3 1098 247 302 134 30 chr1 67271270 67271434 -129923998 - MER5A DNA MER1_type -6 183 3 3 1098 21 0 0 0 chr1 67271930 67271951 -129923481 + AT_rich Low_complexity Low_complexity 1 21 0 3 1098 197 324 120 0 chr1 67273098 67273206 -129922226 - MIR SINE MIR -89 173 53 3 1098 200 219 47 0 chr1 67273377 67273441 -129921991 + A-rich Low_complexity Low_complexity 1 67 0 3 1098 498 33 0 0 chr1 67274104 67274164 -129921268 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1098 323 154 0 15 chr1 67275240 67275306 -129920126 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1098 603 81 0 0 chr1 67276137 67276223 -129919209 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1098 7231 206 46 12 chr1 67277861 67279866 -129915566 - Lx6 LINE L1 -176 7284 5204 3 1098 2472 193 25 21 chr1 67279867 67280439 -129914993 + L1_Mur3 LINE L1 3411 3984 -1896 3 1098 251 254 130 14 chr1 67281180 67281309 -129914123 - MIR SINE MIR -16 252 97 3 1098 348 24 0 0 chr1 67281358 67281399 -129914033 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1098 351 0 0 0 chr1 67281485 67281524 -129913908 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 3 1098 293 297 81 54 chr1 67283225 67283248 -129912184 - B2_Mm1a SINE B2 -1 192 167 3 1098 342 0 0 0 chr1 67283248 67283286 -129912146 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1098 658 291 47 2 chr1 67283286 67283447 -129911985 - B3A SINE B2 -27 166 3 3 1098 5355 156 101 13 chr1 67284644 67284993 -129910439 - RLTR25A LTR ERVK 0 1103 678 3 1098 684 36 0 0 chr1 67284993 67285076 -129910356 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 3 1098 5355 156 101 13 chr1 67285076 67285740 -129909692 - RLTR25A LTR ERVK -426 677 2 3 1098 3041 92 5 5 chr1 67285975 67286401 -129909031 - L1_Mus3 LINE L1 -2 6636 6211 3 1098 1470 106 17 0 chr1 67286402 67286660 -129908772 + L1_Mus3 LINE L1 4982 5272 -614 3 1098 34177 42 2 7 chr1 67286660 67291834 -129903598 + L1Md_F2 LINE L1 443 5585 -298 3 1098 7973 49 1 7 chr1 67291835 67292825 -129902607 + L1Md_F2 LINE L1 5587 6570 -12 3 1098 4542 115 5 32 chr1 67292838 67293218 -129902214 + L1_Mus3 LINE L1 5267 5633 -250 3 1098 2665 27 0 201 chr1 67293218 67293675 -129901757 - RLTR10B2 LTR ERVK 0 365 1 3 1098 4542 68 5 11 chr1 67293675 67294256 -129901176 + L1_Mus3 LINE L1 5634 6210 -428 3 1098 416 250 75 13 chr1 67294607 67294747 -129900685 - ORR1D1 LTR MaLR -8 411 191 3 1098 264 30 0 0 chr1 67294747 67294780 -129900652 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1098 495 0 0 0 chr1 67294780 67294834 -129900598 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1098 227 261 58 107 chr1 67294834 67294879 -129900553 - ORR1D1 LTR MaLR -184 190 144 3 1098 188 411 95 9 chr1 67295338 67295549 -129899883 - L2 LINE L2 -359 3060 2832 3 1098 2264 160 20 15 chr1 67295550 67295955 -129899477 + MTB_Mm LTR MaLR 1 407 0 3 1098 2136 156 28 8 chr1 67295955 67296349 -129899083 + MTB_Mm-int LTR MaLR 1 402 -696 3 1098 503 128 0 25 chr1 67296343 67296423 -129899009 + MTC LTR MaLR 336 413 -8 3 1098 228 373 66 20 chr1 67296734 67296931 -129898501 + MIRb SINE MIR 54 259 -9 3 1098 1310 147 9 18 chr1 67296970 67297198 -129898234 - URR1A DNA MER1_type 0 226 1 3 1098 261 100 120 0 chr1 67297626 67297676 -129897756 - Lx3B LINE L1 -4 6969 6914 3 1098 259 389 67 7 chr1 67297899 67298049 -129897383 - MLT1H1 LTR MaLR -42 513 355 3 1098 613 312 27 18 chr1 67298054 67298273 -129897159 + ID_B1 SINE B4 2 222 -2 3 1098 1863 158 12 58 chr1 67298321 67298663 -129896769 - ORR1A3 LTR MaLR 0 326 1 3 1098 631 365 122 15 chr1 67298693 67299021 -129896411 - MLT1H1 LTR MaLR -192 363 1 3 1098 214 254 91 0 chr1 67301937 67301992 -129893440 - L2c LINE L2 -15 3372 3313 3 1098 215 324 104 35 chr1 67302306 67302450 -129892982 + B2_Mm2 SINE B2 4 157 -38 3 1098 1474 259 98 16 chr1 67302576 67303192 -129892240 - Lx6 LINE L1 -27 7433 6455 3 1098 870 222 29 19 chr1 67303327 67303492 -129891940 + B3 SINE B2 2 170 -46 3 1098 423 0 0 0 chr1 67303492 67303539 -129891893 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1098 870 222 29 19 chr1 67303539 67303580 -129891852 + B3 SINE B2 171 210 -6 3 1098 3966 174 85 58 chr1 67303927 67304805 -129890627 + RMER19B LTR ERVK 1 902 0 3 1098 2266 234 137 94 chr1 67304995 67305887 -129889545 + RMER1B Other Other 1 583 -483 3 1098 2708 81 35 3 chr1 67305887 67306257 -129889175 + IAPEY_LTR LTR ERVK 4 385 0 4 1098 2266 179 275 0 chr1 67306257 67306686 -129888746 + RMER1B Other Other 548 1065 -1 3 1098 807 292 30 9 chr1 67306707 67306938 -129888494 - L4 LINE RTE -1120 909 674 4 1098 457 337 86 60 chr1 67307766 67308151 -129887281 - LTR33 LTR ERVL -92 423 29 4 1098 273 257 53 13 chr1 67308273 67308348 -129887084 - PB1D9 SINE Alu -9 111 34 4 1098 321 282 244 23 chr1 67308447 67308792 -129886640 - L1ME3A LINE L1 -35 6138 5718 4 1098 402 21 0 0 chr1 67308809 67308856 -129886576 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1098 302 304 14 0 chr1 67308858 67308927 -129886505 - ID4_ SINE ID -5 78 9 4 1098 2162 134 28 14 chr1 67308973 67309335 -129886097 - Lx2 LINE L1 0 6997 6631 4 1098 313 279 51 19 chr1 67309336 67309493 -129885939 - L1ME3A LINE L1 -484 5689 5528 4 1098 407 273 99 79 chr1 67309551 67309993 -129885439 - L1ME3A LINE L1 -749 5397 4947 4 1098 186 103 0 0 chr1 67310347 67310376 -129885056 + (TTC)n Simple_repeat Simple_repeat 2 30 0 4 1098 23 33 0 0 chr1 67310545 67310575 -129884857 + AT_rich Low_complexity Low_complexity 1 30 0 4 1098 333 300 117 62 chr1 67311168 67311605 -129883827 - L1M7 LINE L1 -5237 981 521 4 1098 257 382 128 16 chr1 67311790 67312048 -129883384 - LTR33 LTR ERVL -3 512 226 4 1098 468 228 211 45 chr1 67312510 67312818 -129882614 + RLTR10D LTR ERVK 1 359 0 4 1098 1596 27 27 0 chr1 67313133 67313320 -129882112 + B2_Mm1a SINE B2 1 192 -1 4 1098 1977 204 33 31 chr1 67313477 67313933 -129881499 - Lx9 LINE L1 -329 7315 6859 4 1098 280 261 0 28 chr1 67314013 67314084 -129881348 - RSINE1 SINE B4 -4 161 93 4 1098 656 323 34 8 chr1 67314085 67314319 -129881113 - Lx8 LINE L1 -1043 6430 6191 4 1098 21 36 0 0 chr1 67314388 67314416 -129881016 + AT_rich Low_complexity Low_complexity 1 28 0 4 1098 23 78 0 0 chr1 67316255 67316306 -129879126 + AT_rich Low_complexity Low_complexity 1 51 0 4 1098 248 263 144 21 chr1 67317828 67317925 -129877507 - MER81 DNA AcHobo -5 109 1 4 1098 405 0 0 0 chr1 67318040 67318085 -129877347 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1098 240 222 54 36 chr1 67318158 67318214 -129877218 - MIRb SINE MIR -181 87 31 4 1098 1138 69 14 0 chr1 67321454 67321599 -129873833 - B1_Mus2 SINE Alu 0 147 1 4 1098 325 240 109 0 chr1 67322424 67322607 -129872825 - L1MB8 LINE L1 -270 5908 5706 4 1098 362 341 8 8 chr1 67322627 67322757 -129872675 - ID_B1 SINE B4 -2 222 93 4 1098 569 194 74 133 chr1 67322802 67323079 -129872353 - RLTR25A LTR ERVK 0 1028 704 4 1098 935 182 5 24 chr1 67323057 67323265 -129872167 - ORR1A3-int LTR MaLR -998 965 762 4 1098 406 242 121 0 chr1 67323193 67323284 -129872148 - B1_Mm SINE Alu -37 110 9 4 1098 613 326 48 15 chr1 67323313 67323581 -129871851 - Lx8 LINE L1 -180 7293 7017 4 1098 36369 12 0 7 chr1 67323697 67328885 -129866547 + L1Md_A LINE L1 441 5586 -297 4 1098 8717 18 0 2 chr1 67328885 67329883 -129865549 + L1Md_A LINE L1 5587 6582 0 4 1098 924 287 54 20 chr1 67330072 67330424 -129865008 - L1M4b LINE L1 -6134 1200 837 4 1098 276 369 115 5 chr1 67330640 67330858 -129864574 - L1M4b LINE L1 -6854 480 239 4 1098 482 338 50 72 chr1 67331261 67331624 -129863808 - MLT1E1A LTR MaLR -51 629 275 4 1098 621 271 14 14 chr1 67333039 67333181 -129862251 + RSINE1 SINE B4 4 145 -20 4 1098 202 295 94 9 chr1 67333706 67333812 -129861620 + MIRb SINE MIR 90 204 -64 4 1098 341 335 89 25 chr1 67334322 67334423 -129861009 + B4A SINE B4 2 104 -188 4 1098 3285 64 0 92 chr1 67334423 67334903 -129860529 + RLTR10C LTR ERVK 1 436 0 4 1098 341 335 89 25 chr1 67334903 67335003 -129860429 + B4A SINE B4 105 215 -77 4 1098 992 270 60 57 chr1 67335003 67335100 -129860332 + Lx3C LINE L1 6522 6612 -364 4 1098 1105 98 6 0 chr1 67335100 67335263 -129860169 + L1_Mus2 LINE L1 6402 6565 -1 4 1098 992 270 60 57 chr1 67335263 67335585 -129859847 + Lx3C LINE L1 6613 6942 -34 4 1098 243 61 0 0 chr1 67335600 67335633 -129859799 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1098 209 357 74 31 chr1 67335982 67336144 -129859288 - MER5A DNA MER1_type -15 174 6 4 1098 199 95 47 23 chr1 67338083 67338126 -129857306 + CT-rich Low_complexity Low_complexity 2 45 0 4 1098 361 358 40 7 chr1 67338219 67338368 -129857064 - MER5A DNA MER1_type -32 157 4 4 1098 317 333 206 30 chr1 67339069 67339704 -129855728 + L2 LINE L2 2154 2900 -519 4 1098 729 241 41 7 chr1 67341372 67341518 -129853914 + B3 SINE B2 2 152 -64 4 1098 338 102 34 0 chr1 67341525 67341584 -129853848 + (CATA)n Simple_repeat Simple_repeat 4 64 0 4 1098 1000 84 12 0 chr1 67341856 67342022 -129853410 + (GA)n Simple_repeat Simple_repeat 1 168 0 4 1098 417 246 26 26 chr1 67344924 67345041 -129850391 - RLTR23 LTR ERV1 0 430 314 4 1098 3531 63 2 0 chr1 67345082 67345529 -129849903 - L1_Mus1 LINE L1 0 6567 6120 4 1098 203 198 56 100 chr1 67346124 67346214 -129849218 + L3 LINE CR1 949 1034 -3455 4 1098 520 283 104 40 chr1 67346392 67346816 -129848616 - L1MC3 LINE L1 -42 7953 7290 4 1098 2983 61 51 0 chr1 67346826 67347217 -129848215 + RLTR10A LTR ERVK 1 411 0 4 1098 301 161 18 0 chr1 67347221 67347277 -129848155 + L1MC3 LINE L1 6321 6377 -1618 4 1098 306 50 0 0 chr1 67347461 67347501 -129847931 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1098 540 0 0 0 chr1 67347501 67347560 -129847872 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1098 1040 115 29 0 chr1 67347892 67348066 -129847366 + Lx LINE L1 6476 6654 0 4 1098 412 325 70 5 chr1 67348736 67348937 -129846495 + L1MC3 LINE L1 6650 6863 -922 4 1098 8691 97 15 29 chr1 67349365 67351313 -129844119 + Lx3A LINE L1 5062 6979 -2 4 1098 187 279 88 12 chr1 67351478 67351558 -129843874 - L3 LINE CR1 -4281 208 123 4 1098 219 103 0 0 chr1 67351936 67351975 -129843457 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1098 28 0 0 0 chr1 67352680 67352708 -129842724 + AT_rich Low_complexity Low_complexity 1 28 0 4 1098 1294 99 0 35 chr1 67353043 67353241 -129842191 - B2_Mm2 SINE B2 -2 193 3 4 1098 533 275 112 25 chr1 67353250 67353526 -129841906 - Lx8 LINE L1 -2 7471 7172 4 1098 298 324 18 9 chr1 67353650 67353759 -129841673 - Lx8 LINE L1 -1125 6348 6239 4 1098 2940 167 105 52 chr1 67353827 67354484 -129840948 - RLTR17 LTR ERVK 0 692 1 4 1098 465 19 0 0 chr1 67354506 67354560 -129840872 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1098 325 273 54 9 chr1 67354649 67354760 -129840672 - L1MB4 LINE L1 -6355 252 137 4 1098 256 0 30 0 chr1 67355123 67355156 -129840276 - L1_Mus4 LINE L1 -420 6216 6183 4 1098 2828 91 75 20 chr1 67355156 67355607 -129839825 + L1_Mus3 LINE L1 6157 6632 -6 4 1098 404 19 19 0 chr1 67355673 67355726 -129839706 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1098 234 268 121 12 chr1 67355886 67355969 -129839463 + MTD LTR MaLR 18 109 -312 4 1098 292 203 72 0 chr1 67356073 67356142 -129839290 - MERVL_2A-int LTR ERVL -1132 4629 4556 4 1098 435 176 162 77 chr1 67356149 67356279 -129839153 + MTD LTR MaLR 244 379 0 4 1098 921 19 0 0 chr1 67356281 67356388 -129839044 + (TC)n Simple_repeat Simple_repeat 1 107 0 4 1098 215 31 31 0 chr1 67356482 67356514 -129838918 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 4 1098 225 0 0 0 chr1 67356544 67356569 -129838863 + (TTG)n Simple_repeat Simple_repeat 1 25 0 4 1098 3153 240 72 22 chr1 67356832 67357757 -129837675 + RCHARR1 DNA MER1_type 3 974 0 4 1098 5777 62 34 18 chr1 67357830 67358625 -129836807 + RLTR13C2 LTR ERVK 1 808 0 4 1098 315 0 0 0 chr1 67359040 67359075 -129836357 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1098 234 152 45 0 chr1 67359085 67359151 -129836281 + Lx9 LINE L1 7533 7601 -43 4 1098 208 219 0 0 chr1 67359166 67359207 -129836225 + G-rich Low_complexity Low_complexity 2 42 0 4 1098 342 0 0 0 chr1 67360275 67360313 -129835119 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1098 293 331 115 0 chr1 67360776 67360915 -129834517 - MLT1A LTR MaLR 0 374 220 4 1098 688 50 0 19 chr1 67361009 67361112 -129834320 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 1098 264 308 172 4 chr1 67361134 67361372 -129834060 - Lx8 LINE L1 -9 7464 7187 4 1098 220 108 54 0 chr1 67361438 67361475 -129833957 - PB1D7 SINE Alu 0 120 82 4 1098 588 309 58 14 chr1 67362378 67362585 -129832847 - Tigger5 DNA MER2_type -3 2403 2188 4 1098 840 267 156 26 chr1 67362586 67362855 -129832577 - Tigger5 DNA MER2_type -2100 306 3 4 1098 405 141 0 0 chr1 67362900 67362971 -129832461 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1098 569 278 64 17 chr1 67362971 67363143 -129832289 - B3A SINE B2 -15 183 4 4 1098 359 55 0 18 chr1 67363356 67363411 -129832021 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1098 413 295 207 62 chr1 67363661 67364122 -129831310 - ERVL-B4-int LTR ERVL -3970 1744 1217 4 1098 1155 320 45 13 chr1 67364251 67364920 -129830512 - ERVL-B4-int LTR ERVL -4979 688 1 4 1098 375 23 0 0 chr1 67365000 67365044 -129830388 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1098 226 263 20 10 chr1 67365064 67365164 -129830268 + (TA)n Simple_repeat Simple_repeat 1 101 0 4 1098 628 272 118 38 chr1 67365167 67365404 -129830028 - MLT2D LTR ERVL -151 263 8 4 1098 894 166 50 41 chr1 67365423 67365643 -129829789 + RMER1C Other Other 1120 1341 -1 4 1098 917 34 0 0 chr1 67366377 67366496 -129828936 - L1Md_T LINE L1 -2 6580 6462 4 1098 3424 113 11 0 chr1 67366519 67367051 -129828381 - L1_Mm LINE L1 -86 5797 5260 4 1098 1721 88 30 8 chr1 67367044 67367309 -129828123 + L1_Mus3 LINE L1 6347 6617 -21 4 1098 29 0 0 0 chr1 67368380 67368409 -129827023 + AT_rich Low_complexity Low_complexity 1 29 0 4 1098 188 346 113 46 chr1 67368894 67369267 -129826165 + L2a LINE L2 3022 3419 -7 4 1098 26 0 0 0 chr1 67369341 67369367 -129826065 + AT_rich Low_complexity Low_complexity 1 26 0 4 1099 317 355 93 62 chr1 67371118 67371442 -129823990 + ORR1D1 LTR MaLR 6 339 -35 4 1099 1478 230 91 54 chr1 67371714 67372100 -129823332 - RMER19C LTR ERVK 0 611 212 4 1099 351 0 0 0 chr1 67372141 67372180 -129823252 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1099 587 312 68 27 chr1 67373131 67373352 -129822080 + MTE2a LTR MaLR 58 287 -92 4 1099 306 50 0 0 chr1 67374551 67374591 -129820841 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1099 411 21 0 0 chr1 67374591 67374638 -129820794 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1099 1094 266 71 77 chr1 67374837 67375203 -129820229 - ORR1D2 LTR MaLR 0 370 7 5 1099 285 295 13 0 chr1 67375748 67375826 -129819606 - MER31B LTR ERV1 -384 82 4 5 1099 363 342 94 0 chr1 67375892 67376041 -129819391 - MER45A DNA Tip100 -9 169 7 5 1099 660 270 41 36 chr1 67376588 67376784 -129818648 - B3 SINE B2 -6 210 14 5 1099 713 313 5 15 chr1 67376888 67377089 -129818343 + B4A SINE B4 6 204 -88 5 1099 1182 61 14 0 chr1 67378098 67378246 -129817186 - B1_Mur4 SINE Alu 0 150 1 5 1099 24 0 0 0 chr1 67378832 67378856 -129816576 + AT_rich Low_complexity Low_complexity 1 24 0 5 1099 828 195 0 0 chr1 67379928 67380097 -129815335 + CT-rich Low_complexity Low_complexity 2 170 0 5 1099 1538 230 72 28 chr1 67380151 67380540 -129814892 + MTD LTR MaLR 1 406 -13 5 1099 1215 88 0 0 chr1 67380935 67381105 -129814327 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 5 1099 432 0 0 0 chr1 67381844 67381892 -129813540 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 5 1099 7108 63 21 0 chr1 67381952 67383172 -129812260 - L1_Mus1 LINE L1 -3 6564 5325 5 1099 2098 213 87 7 chr1 67383192 67383768 -129811664 + Lx9 LINE L1 7018 7639 -5 5 1099 308 265 12 12 chr1 67384356 67384440 -129810992 - MTEa LTR MaLR -3 376 293 5 1099 744 12 0 0 chr1 67384525 67384610 -129810822 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 1099 192 181 0 53 chr1 67385034 67385110 -129810322 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 5 1099 236 289 78 0 chr1 67385352 67385442 -129809990 - Lx6 LINE L1 -26 7434 7338 5 1099 6091 201 32 22 chr1 67385442 67387964 -129807468 - Lx6 LINE L1 -269 7191 4641 5 1099 1221 165 90 4 chr1 67387964 67388208 -129807224 + RMER4B LTR ERVK 1 265 -320 5 1099 502 231 50 18 chr1 67388344 67388531 -129806901 + RMER4B LTR ERVK 343 574 -11 5 1099 180 0 0 0 chr1 67388565 67388585 -129806847 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1099 3702 125 32 56 chr1 67388602 67388912 -129806520 - Lx6 LINE L1 -1283 4597 4290 5 1099 180 0 0 0 chr1 67388912 67388932 -129806500 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1099 3702 125 32 56 chr1 67388932 67389349 -129806083 - Lx6 LINE L1 -1591 4289 3888 5 1099 207 0 0 0 chr1 67389371 67389394 -129806038 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1099 432 55 0 0 chr1 67389923 67389978 -129805454 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1099 23 0 0 0 chr1 67389996 67390019 -129805413 + AT_rich Low_complexity Low_complexity 1 23 0 5 1099 29 0 0 0 chr1 67390082 67390111 -129805321 + AT_rich Low_complexity Low_complexity 1 29 0 5 1099 4740 65 4 0 chr1 67390590 67391303 -129804129 + L1_Mus1 LINE L1 5466 6181 -386 5 1099 1260 86 0 0 chr1 67391395 67391570 -129803862 + (TC)n Simple_repeat Simple_repeat 2 176 0 5 1099 464 273 56 89 chr1 67392280 67392493 -129802939 + L2c LINE L2 3182 3387 0 5 1099 210 401 87 15 chr1 67392687 67392882 -129802550 + MIRb SINE MIR 14 222 -46 5 1099 232 280 46 74 chr1 67393956 67394064 -129801368 - MLT1A0 LTR MaLR -22 343 239 5 1099 2673 249 97 10 chr1 67394085 67394810 -129800622 + Lx7 LINE L1 6571 7358 -338 5 1099 1469 35 0 0 chr1 67394805 67394975 -129800457 + L1Md_F2 LINE L1 5417 5586 -297 5 1099 8218 34 7 0 chr1 67394975 67395954 -129799478 + L1Md_F2 LINE L1 5587 6572 -10 5 1099 29 0 0 0 chr1 67396860 67396889 -129798543 + AT_rich Low_complexity Low_complexity 1 29 0 5 1099 3482 216 67 41 chr1 67397073 67397906 -129797526 - Lx6 LINE L1 -4 7456 6602 5 1099 414 0 0 0 chr1 67397971 67398017 -129797415 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1099 317 301 12 12 chr1 67398019 67398103 -129797329 - B4A SINE B4 -208 84 1 5 1099 186 128 0 0 chr1 67398862 67398901 -129796531 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1099 278 347 69 29 chr1 67399938 67400113 -129795319 - MER20B DNA MER1_type -5 778 597 5 1099 198 71 0 0 chr1 67400630 67400658 -129794774 + (CCA)n Simple_repeat Simple_repeat 2 29 0 5 1099 563 359 157 29 chr1 67401128 67401581 -129793851 - MER20B DNA MER1_type -272 511 1 5 1099 490 307 148 21 chr1 67402111 67402270 -129793162 - Arthur1 DNA Tip100 0 3947 3771 5 1099 316 0 22 22 chr1 67402270 67402315 -129793117 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 5 1099 490 307 148 21 chr1 67402315 67402541 -129792891 - Arthur1 DNA Tip100 -177 3770 3513 5 1099 374 342 35 0 chr1 67402758 67402872 -129792560 - Arthur1 DNA Tip100 -3827 120 3 5 1099 259 313 59 29 chr1 67403934 67404036 -129791396 - L2a LINE L2 -22 3404 3300 5 1099 641 252 0 34 chr1 67404466 67404614 -129790818 + ID_B1 SINE B4 81 223 -1 5 1099 1774 273 78 40 chr1 67407114 67407846 -129787586 - Lx9 LINE L1 -27 7617 6858 5 1099 638 316 87 58 chr1 67407859 67408413 -129787019 - Lx8 LINE L1 -1114 6359 5790 5 1099 210 37 0 0 chr1 67408533 67408560 -129786872 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1099 214 361 33 25 chr1 67408577 67408732 -129786700 - MIRb SINE MIR -102 174 13 5 1099 547 246 21 14 chr1 67409851 67409991 -129785441 - Lx7 LINE L1 0 7696 7556 5 1099 226 367 101 7 chr1 67410100 67410248 -129785184 - MIRb SINE MIR -16 252 91 5 1099 610 244 20 4 chr1 67410474 67410622 -129784810 + MIRb SINE MIR 82 231 -31 5 1099 258 195 0 0 chr1 67411416 67411498 -129783934 + GA-rich Low_complexity Low_complexity 1 82 0 5 1099 186 143 0 0 chr1 67413927 67413962 -129781470 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1099 206 206 0 0 chr1 67413974 67414008 -129781424 + polypurine Low_complexity Low_complexity 3 36 0 5 1099 7103 179 63 51 chr1 67414510 67414786 -129780646 + Lx6 LINE L1 3988 4275 -1605 5 1099 402 21 0 0 chr1 67414786 67414833 -129780599 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1099 363 73 0 0 chr1 67414834 67414889 -129780543 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 5 1099 7103 179 63 51 chr1 67414889 67414910 -129780522 + Lx6 LINE L1 4276 4295 -1585 5 1099 3345 33 2 5 chr1 67414910 67415307 -129780125 + MTA_Mm LTR MaLR 1 396 0 5 1099 7103 179 63 51 chr1 67415307 67415551 -129779881 + Lx6 LINE L1 4296 4531 -1349 5 1099 3669 77 36 0 chr1 67415551 67416044 -129779388 - L1_Mus1 LINE L1 0 6567 6057 5 1099 7103 179 63 51 chr1 67416044 67416137 -129779295 + Lx6 LINE L1 4532 4639 -1241 5 1099 263 28 28 0 chr1 67416137 67416173 -129779259 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1099 7103 179 63 51 chr1 67416173 67417210 -129778222 + Lx6 LINE L1 4640 5685 -195 5 1099 1055 282 44 6 chr1 67417203 67417521 -129777911 + Lx6 LINE L1 6005 6334 -1126 5 1099 3796 214 110 21 chr1 67417602 67418591 -129776841 + RMER1B Other Other 168 1055 -11 5 1099 43 20 0 0 chr1 67418591 67418641 -129776791 + AT_rich Low_complexity Low_complexity 1 50 0 5 1099 2658 269 52 28 chr1 67418641 67419643 -129775789 - Lx9 LINE L1 -13 7631 6583 5 1099 1107 88 0 0 chr1 67419976 67420124 -129775308 - B1_Mus1 SINE Alu 0 148 1 5 1099 1910 59 0 38 chr1 67420303 67420566 -129774866 - L1_Mus1 LINE L1 -4 6563 6311 5 1099 15116 112 3 1 chr1 67420566 67423074 -129772358 - L1Md_A LINE L1 -2385 3498 985 5 1099 778 253 130 15 chr1 67423068 67423337 -129772095 - L1Md_A LINE L1 -5933 683 384 5 1099 1195 74 0 0 chr1 67423605 67423753 -129771679 - B1_Mus1 SINE Alu 0 148 1 5 1099 180 0 0 0 chr1 67423825 67423845 -129771587 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5 1099 1276 80 11 6 chr1 67423848 67424024 -129771408 - L1_Mus1 LINE L1 0 6567 6391 5 1099 5154 93 42 1 chr1 67424024 67424747 -129770685 - Lx3_Mus LINE L1 -26 6983 6232 5 1099 656 234 51 36 chr1 67424754 67424949 -129770483 - Lx6 LINE L1 -8 7452 7255 5 1099 213 81 54 0 chr1 67425364 67425401 -129770031 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 5 1099 4566 131 4 11 chr1 67425403 67426113 -129769319 - Lx3B LINE L1 -2 6971 6267 5 1099 1858 165 38 30 chr1 67426136 67426169 -129769263 - RLTR31_Mm LTR ERVK -164 397 360 5 1099 207 0 0 0 chr1 67426169 67426192 -129769240 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1099 1858 165 38 30 chr1 67426192 67426552 -129768880 - RLTR31_Mm LTR ERVK -202 359 2 5 1099 5310 190 68 54 chr1 67426554 67427993 -129767439 - RMER3D-int LTR ERVK -2 2840 1382 5 1099 594 0 0 0 chr1 67428019 67428085 -129767347 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 5 1099 384 156 0 15 chr1 67428089 67428154 -129767278 + RLTR31_Mm LTR ERVK 11 74 -487 5 1099 1185 288 58 22 chr1 67428284 67428696 -129766736 - BGLII_B LTR ERVK -10 431 5 5 1099 420 305 9 9 chr1 67428781 67428887 -129766545 + RSINE1 SINE B4 11 116 -49 5 1099 378 61 0 0 chr1 67428889 67428938 -129766494 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1099 423 368 22 13 chr1 67429065 67429291 -129766141 - L3b LINE CR1 -204 278 51 5 1099 21 57 0 0 chr1 67429339 67429374 -129766058 + AT_rich Low_complexity Low_complexity 1 35 0 5 1099 851 259 61 44 chr1 67429386 67429681 -129765751 + RLTR11A LTR ERVK 1 300 -228 5 1099 513 0 0 0 chr1 67429777 67429834 -129765598 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 5 1099 347 335 191 21 chr1 67430041 67430465 -129764967 - L1MCb LINE L1 -5547 498 3 5 1099 222 105 0 0 chr1 67430530 67430568 -129764864 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1099 591 27 0 0 chr1 67431652 67431725 -129763707 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1099 1136 157 5 0 chr1 67431899 67432090 -129763342 - Lx2 LINE L1 -41 6956 6765 5 1099 4885 125 20 27 chr1 67432078 67432895 -129762537 - Lx2 LINE L1 -360 6637 5827 5 1099 589 205 15 23 chr1 67432895 67433025 -129762407 + MTD LTR MaLR 291 419 0 5 1099 267 29 0 0 chr1 67433111 67433133 -129762299 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1099 486 120 0 0 chr1 67433133 67433208 -129762224 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1099 267 29 0 0 chr1 67433208 67433219 -129762213 + (TA)n Simple_repeat Simple_repeat 1 11 0 5 1099 206 257 56 28 chr1 67433898 67433970 -129761462 + MIR SINE MIR 138 211 -51 5 1099 254 352 47 54 chr1 67434887 67435016 -129760416 - ID_B1 SINE B4 -77 147 20 5 1099 21 0 0 0 chr1 67435041 67435062 -129760370 + AT_rich Low_complexity Low_complexity 1 21 0 5 1099 535 303 27 63 chr1 67435113 67435335 -129760097 - B4A SINE B4 0 292 79 5 1099 186 43 0 0 chr1 67435428 67435451 -129759981 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1099 207 0 0 0 chr1 67435572 67435595 -129759837 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 5 1099 203 310 17 0 chr1 67435958 67436016 -129759416 - MIRb SINE MIR -193 75 17 5 1099 180 152 0 0 chr1 67437512 67437545 -129757887 + T-rich Low_complexity Low_complexity 1 33 0 5 1099 1079 85 0 0 chr1 67437547 67437688 -129757744 - B1_Mus1 SINE Alu -7 141 1 6 1099 228 35 0 0 chr1 67437958 67437987 -129757445 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1099 1735 166 51 21 chr1 67438298 67438630 -129756802 - RLTR14 LTR ERV1 -19 363 22 6 1099 428 321 37 23 chr1 67439015 67439232 -129756200 - RLTR15 LTR ERVK -95 264 45 6 1099 2884 152 11 42 chr1 67439314 67439855 -129755577 - MYSERV6-int LTR ERVK -2 8957 8434 6 1099 2667 184 77 16 chr1 67439862 67440474 -129754958 - MYSERV-int LTR ERVK -621 5929 5281 6 1099 446 318 45 31 chr1 67440998 67441222 -129754210 - RLTR15 LTR ERVK -76 283 57 6 1099 331 306 168 79 chr1 67441370 67441650 -129753782 - MTEa LTR MaLR -6 373 69 6 1099 451 174 31 0 chr1 67441678 67441776 -129753656 - Lx9 LINE L1 -6 7638 7538 6 1099 314 270 0 0 chr1 67441798 67441872 -129753560 - Lx9 LINE L1 -393 7251 7178 6 1099 277 281 49 0 chr1 67442112 67442194 -129753238 + PB1D7 SINE Alu 33 118 -2 6 1099 28 61 0 0 chr1 67442204 67442253 -129753179 + AT_rich Low_complexity Low_complexity 1 49 0 6 1099 628 276 32 22 chr1 67442253 67442438 -129752994 - Lx8 LINE L1 -317 7156 6970 6 1099 371 280 99 76 chr1 67442453 67442716 -129752716 + Lx8 LINE L1 7197 7465 -8 6 1099 189 228 38 0 chr1 67444064 67444143 -129751289 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1099 241 322 74 43 chr1 67444696 67444858 -129750574 - MamGypLTR1a LTR Gypsy -549 235 69 6 1099 250 265 19 56 chr1 67445539 67445647 -129749785 - L1MC LINE L1 -1584 4562 4459 6 1099 490 99 130 11 chr1 67445773 67445884 -129749548 - B1_Mm SINE Alu 0 148 21 6 1099 392 306 91 51 chr1 67445897 67446566 -129748866 - L1M5 LINE L1 -1853 4293 3598 6 1099 26 0 0 0 chr1 67447106 67447132 -129748300 + AT_rich Low_complexity Low_complexity 1 26 0 6 1099 200 206 0 0 chr1 67448590 67448624 -129746808 + polypyrimidine Low_complexity Low_complexity 66 99 0 6 1099 1142 81 0 0 chr1 67448624 67448772 -129746660 - B1_Mus1 SINE Alu 0 148 1 6 1099 582 275 14 0 chr1 67448897 67449039 -129746393 - B4A SINE B4 -12 280 137 6 1099 382 296 52 7 chr1 67449119 67449272 -129746160 + B4A SINE B4 125 284 -8 6 1099 258 105 0 0 chr1 67449333 67449371 -129746061 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1099 181 313 14 43 chr1 67451308 67451378 -129744054 + MIRm SINE MIR 163 230 -46 6 1099 746 269 99 19 chr1 67451385 67451647 -129743785 + RMER20B LTR ERVK 131 413 -214 6 1099 2558 120 22 0 chr1 67451752 67451833 -129743599 + Lx2B LINE L1 6583 6665 -335 6 1099 244 64 43 0 chr1 67451833 67451880 -129743552 + (CAA)n Simple_repeat Simple_repeat 2 50 0 6 1099 2558 120 22 0 chr1 67451880 67452199 -129743233 + Lx2B LINE L1 6666 6991 -9 6 1099 243 178 25 76 chr1 67452498 67452577 -129742855 + (TATATG)n Simple_repeat Simple_repeat 5 79 0 6 1099 553 299 71 47 chr1 67452637 67452848 -129742584 + B3A SINE B2 1 216 0 6 1099 207 378 56 0 chr1 67453059 67453149 -129742283 + MIRb SINE MIR 67 161 -107 6 1099 214 211 0 0 chr1 67453438 67453476 -129741956 + (TAA)n Simple_repeat Simple_repeat 2 39 0 6 1099 1938 134 145 16 chr1 67454092 67454457 -129740975 + MTC LTR MaLR 10 421 0 6 1099 237 281 85 0 chr1 67454789 67454871 -129740561 + MIRc SINE MIR 180 268 0 6 1099 318 302 59 17 chr1 67455178 67455296 -129740136 + MER5A1 DNA MER1_type 43 165 -1 6 1099 438 312 23 47 chr1 67456297 67456581 -129738851 + LTR33A_ LTR ERVL 245 531 0 6 1099 241 301 85 42 chr1 67457148 67457266 -129738166 + MER91A DNA Tip100 2 124 -72 6 1099 189 0 0 0 chr1 67457524 67457545 -129737887 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1099 636 124 0 0 chr1 67458726 67458831 -129736601 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 1099 5475 124 20 13 chr1 67459562 67460438 -129734994 + Lx3B LINE L1 6091 6973 0 6 1099 22 0 0 0 chr1 67460488 67460510 -129734922 + AT_rich Low_complexity Low_complexity 1 22 0 6 1099 266 58 13 104 chr1 67460887 67460964 -129734468 + A-rich Low_complexity Low_complexity 3 72 0 6 1099 405 0 0 0 chr1 67462571 67462616 -129732816 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1099 4019 195 51 60 chr1 67463722 67464138 -129731294 - RMER19B LTR ERVK -42 860 418 6 1099 2948 91 5 10 chr1 67464138 67464547 -129730885 - MTB_Mm LTR MaLR 0 407 1 6 1099 4019 195 51 60 chr1 67464547 67464998 -129730434 - RMER19B LTR ERVK -485 417 2 6 1099 2675 184 48 9 chr1 67465298 67465752 -129729680 + RLTR20B2 LTR ERVK 1 452 -108 6 1099 270 0 0 0 chr1 67465752 67465782 -129729650 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1099 2675 184 48 9 chr1 67465782 67465865 -129729567 + RLTR20B2 LTR ERVK 453 558 -2 6 1099 905 280 0 4 chr1 67466428 67466654 -129728778 - Lx8 LINE L1 -142 7331 7107 6 1099 758 330 23 15 chr1 67466640 67466905 -129728527 - Lx8 LINE L1 -584 6889 6623 6 1099 369 0 0 0 chr1 67466974 67467015 -129728417 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1099 675 289 27 0 chr1 67467030 67467179 -129728253 - RSINE1 SINE B4 -10 155 3 6 1099 2835 135 101 10 chr1 67467391 67467885 -129727547 + Lx4A LINE L1 6518 7056 -2 6 1099 26 30 0 0 chr1 67467885 67467918 -129727514 + AT_rich Low_complexity Low_complexity 1 33 0 6 1099 228 257 107 139 chr1 67468538 67468660 -129726772 - MLT1F1 LTR MaLR -257 312 195 6 1099 869 292 55 113 chr1 67468898 67469280 -129726152 - MTE2a LTR MaLR -2 377 18 6 1099 2569 67 55 0 chr1 67469280 67469608 -129725824 - ORR1A1 LTR MaLR 0 346 1 6 1099 1424 37 0 31 chr1 67470110 67470304 -129725128 + L1Md_F2 LINE L1 6392 6579 -3 6 1099 463 186 26 0 chr1 67470828 67470941 -129724491 - Lx9 LINE L1 -6 7638 7523 6 1099 263 276 116 41 chr1 67471569 67471690 -129723742 + MLT1A1 LTR MaLR 260 389 -19 6 1099 570 29 0 0 chr1 67472474 67472542 -129722890 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 1099 1058 306 120 23 chr1 67472796 67473238 -129722194 - Lx8 LINE L1 -345 7128 6644 6 1099 969 223 196 120 chr1 67473538 67474078 -129721354 + Lx9 LINE L1 6996 7576 -68 6 1099 1146 191 121 34 chr1 67474078 67474343 -129721089 + RMER20B LTR ERVK 1 288 -339 6 1099 2927 128 145 8 chr1 67474376 67474894 -129720538 + Lx2B LINE L1 6404 6992 -8 6 1099 626 268 67 44 chr1 67474907 67475177 -129720255 + RMER20B LTR ERVK 277 552 -75 6 1099 488 221 43 22 chr1 67475199 67475338 -129720094 + RMER20B LTR ERVK 461 602 -25 6 1099 21 36 0 0 chr1 67475385 67475413 -129720019 + AT_rich Low_complexity Low_complexity 1 28 0 6 1099 367 321 113 39 chr1 67477035 67477265 -129718167 - MIRc SINE MIR -21 247 1 6 1099 186 43 0 0 chr1 67477894 67477917 -129717515 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 1099 402 139 0 0 chr1 67479677 67479763 -129715669 + (T)n Simple_repeat Simple_repeat 1 86 0 6 1099 961 150 0 0 chr1 67479763 67479910 -129715522 - B1_Mus1 SINE Alu 0 148 2 6 1099 226 291 139 0 chr1 67479994 67480073 -129715359 + B1F2 SINE Alu 9 98 -51 6 1099 503 299 96 55 chr1 67481056 67481366 -129714066 + MLT1D LTR MaLR 46 369 -136 6 1099 28 29 0 0 chr1 67481818 67481853 -129713579 + AT_rich Low_complexity Low_complexity 1 35 0 6 1099 1702 233 77 126 chr1 67482069 67482893 -129712539 + RMER17B LTR ERVK 2 784 -174 6 1099 327 298 75 37 chr1 67482919 67483107 -129712325 + RMER13B LTR ERVK 704 898 -10 6 1099 796 174 181 20 chr1 67483233 67483318 -129712114 - RLTR20B2 LTR ERVK 0 563 472 6 1099 270 0 0 0 chr1 67483318 67483348 -129712084 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1099 984 181 141 25 chr1 67483348 67483624 -129711808 - RLTR20B2 LTR ERVK -92 471 1 6 1099 908 315 79 12 chr1 67484481 67484822 -129710610 - MLT1A0 LTR MaLR -1 364 1 6 1099 1640 241 55 85 chr1 67485152 67485409 -129710023 + RMER21A LTR ERV1 455 700 -247 6 1099 1119 95 6 16 chr1 67485409 67485591 -129709841 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1099 1640 136 41 118 chr1 67485591 67485907 -129709525 + RMER21A LTR ERV1 692 947 0 6 1099 411 234 0 0 chr1 67485907 67485977 -129709455 + RMER21B LTR ERV1 765 834 -8 6 1099 1085 263 19 75 chr1 67486073 67486381 -129709051 - B4 SINE B4 0 292 2 6 1099 368 292 0 0 chr1 67487788 67487877 -129707555 - MER70B LTR ERVL -485 93 5 6 1099 324 317 103 65 chr1 67487877 67488167 -129707265 - L1MC4a LINE L1 -833 7049 6749 6 1099 39 22 0 0 chr1 67488331 67488377 -129707055 + AT_rich Low_complexity Low_complexity 1 46 0 6 1099 856 288 47 50 chr1 67488573 67488617 -129706815 + L1_Mur3 LINE L1 124 159 -7569 6 1099 3200 42 3 3 chr1 67488617 67489002 -129706430 + IAPEY_LTR LTR ERVK 1 385 0 6 1099 2262 241 112 27 chr1 67489002 67489859 -129705573 + L1_Mur3 LINE L1 160 1349 -4531 6 1099 2012 62 4 0 chr1 67489859 67490119 -129705313 + L1Md_F2 LINE L1 6322 6582 0 6 1099 763 190 13 85 chr1 67490119 67490195 -129705237 + L1_Mur3 LINE L1 1350 1416 -4464 6 1099 597 69 0 0 chr1 67490247 67490334 -129705098 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1099 2609 228 10 14 chr1 67490349 67490865 -129704567 + Lx6 LINE L1 6941 7454 -6 6 1099 1150 58 7 0 chr1 67491783 67491937 -129703495 - L1_Mus1 LINE L1 0 6567 6413 6 1099 2830 30 42 0 chr1 67491937 67492274 -129703158 + L1_Mus1 LINE L1 6052 6402 -165 6 1099 507 95 0 0 chr1 67494019 67494093 -129701339 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1099 614 94 25 8 chr1 67494100 67494218 -129701214 - L1_Mus3 LINE L1 -2 6636 6517 6 1099 1489 98 139 35 chr1 67494218 67494505 -129700927 + Lx3_Mus LINE L1 6028 6344 -665 6 1099 384 107 0 0 chr1 67494488 67494544 -129700888 + Lx3_Mus LINE L1 6630 6685 -324 6 1099 1533 115 0 21 chr1 67495500 67495739 -129699693 - L1Md_F2 LINE L1 -13 6569 6336 6 1099 1544 179 151 0 chr1 67495917 67496236 -129699196 - ORR1B2 LTR MaLR 0 367 1 6 1099 245 179 0 23 chr1 67496433 67496485 -129698947 + PB1 SINE Alu 62 123 -4 6 1099 389 314 130 43 chr1 67496583 67496836 -129698596 + ORR1E LTR MaLR 1 275 -84 6 1099 197 218 34 68 chr1 67498280 67498339 -129697093 + L3 LINE CR1 2101 2157 -2332 6 1099 337 281 144 10 chr1 67498828 67498932 -129696500 + RSINE1 SINE B4 2 119 -46 6 1099 450 0 0 0 chr1 67498946 67498996 -129696436 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1099 24 53 0 0 chr1 67499035 67499073 -129696359 + AT_rich Low_complexity Low_complexity 1 38 0 7 1099 21 0 0 0 chr1 67499114 67499135 -129696297 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 713 253 145 0 chr1 67501033 67501219 -129694213 + B3 SINE B2 2 214 -2 1 1099 294 349 33 16 chr1 67501313 67501348 -129694084 + L1MC3 LINE L1 2253 2288 -3858 2 1099 756 33 0 0 chr1 67501348 67501439 -129693993 + (GAGAA)n Simple_repeat Simple_repeat 5 95 0 3 1099 641 298 34 23 chr1 67501439 67501706 -129693726 + L1MC3 LINE L1 2289 2559 -3587 2 137 830 268 85 26 chr1 67501719 67502144 -129693288 + L1MC3 LINE L1 2790 3239 -2907 2 1100 441 291 115 45 chr1 67502429 67503007 -129692425 + L1MC3 LINE L1 3230 3854 -2292 2 1100 596 288 57 8 chr1 67503008 67503307 -129692125 + L1MC3 LINE L1 5284 5595 -584 2 1100 329 303 64 26 chr1 67503697 67503853 -129691579 + MLT1A0 LTR MaLR 204 365 0 4 1100 1247 304 140 73 chr1 67503920 67505679 -129689753 + L1MC3 LINE L1 5900 7776 -9 2 1100 2037 124 6 18 chr1 67506229 67506557 -129688875 + Lx LINE L1 6329 6652 -2 5 1100 2259 117 14 6 chr1 67507065 67507409 -129688023 + ORR1B1 LTR MaLR 48 394 0 6 1100 191 154 39 0 chr1 67507708 67507745 -129687687 + T-rich Low_complexity Low_complexity 17 55 0 7 1100 1054 95 7 0 chr1 67507745 67507892 -129687540 - B1_Mus1 SINE Alu 0 148 1 8 1100 191 154 39 0 chr1 67507892 67507906 -129687526 + T-rich Low_complexity Low_complexity 3 16 0 9 1100 423 68 0 0 chr1 67509867 67509926 -129685506 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1100 294 136 24 12 chr1 67509940 67510022 -129685410 + CT-rich Low_complexity Low_complexity 1 83 0 1 1100 234 0 0 0 chr1 67510024 67510050 -129685382 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1100 589 322 60 67 chr1 67510072 67510355 -129685077 - B4A SINE B4 -8 284 4 1 1100 21 0 0 0 chr1 67511562 67511583 -129683849 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 317 166 56 25 chr1 67512444 67512605 -129682827 + (TCTG)n Simple_repeat Simple_repeat 3 168 0 1 1100 337 353 104 71 chr1 67512766 67513470 -129681962 + L1MEc LINE L1 806 1532 -4891 1 1100 208 200 0 28 chr1 67513470 67513542 -129681890 + GA-rich Low_complexity Low_complexity 2 71 0 1 1100 382 222 40 12 chr1 67513752 67513925 -129681507 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1100 310 252 269 14 chr1 67514036 67514181 -129681251 + B3A SINE B2 1 182 -16 1 1100 573 218 0 0 chr1 67514184 67514354 -129681078 + (CA)n Simple_repeat Simple_repeat 2 171 0 2 1100 25 0 0 0 chr1 67514372 67514397 -129681035 + AT_rich Low_complexity Low_complexity 1 25 0 2 1100 784 283 64 26 chr1 67514459 67514724 -129680708 + ORR1D2 LTR MaLR 44 318 -52 2 1100 400 381 8 0 chr1 67514894 67515020 -129680412 + B3A SINE B2 38 164 -34 2 1100 365 355 75 32 chr1 67515239 67515585 -129679847 + L1MEc LINE L1 2492 2852 -4170 1 1100 3131 149 36 4 chr1 67515886 67516319 -129679113 + RLTR20A LTR ERVK 1 439 -102 2 1100 390 42 0 0 chr1 67516319 67516367 -129679065 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1100 3131 149 36 4 chr1 67516367 67516457 -129678975 + RLTR20A LTR ERVK 440 540 -1 2 1100 366 322 45 26 chr1 67516628 67516784 -129678648 + MER77 LTR ERVL 445 603 -4 2 1100 279 358 77 21 chr1 67516856 67517233 -129678199 + L1MEc LINE L1 3035 3432 -3509 1 1100 881 95 8 0 chr1 67517392 67517518 -129677914 - Lx2 LINE L1 -774 6223 6097 2 1100 2066 120 31 42 chr1 67517518 67517910 -129677522 + RLTR13D6 LTR ERVK 1 391 -632 2 1100 2003 123 58 9 chr1 67517915 67518259 -129677173 - L1_Mm LINE L1 -377 5506 5146 2 1100 6557 112 2 10 chr1 67518995 67519980 -129675452 - L1_Mm LINE L1 -747 5136 4160 2 1100 1169 99 0 11 chr1 67519975 67520149 -129675283 + L1_Mm LINE L1 4978 5149 -734 3 1100 1511 60 0 0 chr1 67520137 67520322 -129675110 + L1_Mm LINE L1 5391 5575 -308 3 1100 4204 76 4 0 chr1 67520322 67520875 -129674557 + L1_Mus1 LINE L1 6013 6567 0 3 1100 322 318 122 44 chr1 67521948 67522129 -129673303 - MTD LTR MaLR -112 307 113 3 1100 1062 143 23 1 chr1 67522132 67522314 -129673118 - ORR1A2 LTR MaLR -169 225 1 3 1100 344 155 14 0 chr1 67522348 67522419 -129673013 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1100 1190 130 0 6 chr1 67522419 67522597 -129672835 + ORR1A2 LTR MaLR 151 327 0 3 1100 216 0 0 0 chr1 67522629 67522653 -129672779 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1100 524 332 112 45 chr1 67522897 67522987 -129672445 - B4A SINE B4 -1 291 203 3 1100 308 169 0 0 chr1 67522987 67523046 -129672386 - Lx8 LINE L1 0 7473 7415 3 1100 524 332 112 45 chr1 67523046 67523223 -129672209 - B4A SINE B4 -90 202 7 3 1100 22 35 0 0 chr1 67523380 67523409 -129672023 + AT_rich Low_complexity Low_complexity 1 29 0 3 1100 240 35 0 0 chr1 67524069 67524098 -129671334 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 4 1100 21 0 0 0 chr1 67524567 67524588 -129670844 + AT_rich Low_complexity Low_complexity 1 21 0 4 1100 578 291 18 0 chr1 67525078 67525243 -129670189 - Lx9 LINE L1 -782 6862 6695 4 1100 971 244 109 10 chr1 67525243 67525554 -129669878 + Lx9 LINE L1 7219 7560 -84 4 1100 252 0 0 0 chr1 67525627 67525655 -129669777 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1100 242 333 0 0 chr1 67525819 67525897 -129669535 - MLT1D LTR MaLR -1 504 427 4 1100 1051 211 429 2 chr1 67526564 67526611 -129668821 - MT2B2 LTR ERVL 0 584 529 4 1100 483 18 0 0 chr1 67526611 67526667 -129668765 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1100 1051 211 429 2 chr1 67526667 67527027 -129668405 - MT2B2 LTR ERVL -56 528 5 4 1100 725 111 17 0 chr1 67527076 67527193 -129668239 + (TTTTC)n Simple_repeat Simple_repeat 4 122 0 4 1100 4080 211 96 40 chr1 67528348 67529400 -129666032 - Lx9 LINE L1 -445 7199 6089 4 1100 731 258 11 16 chr1 67529645 67529830 -129665602 - Lx7 LINE L1 -451 7245 7062 5 1100 189 0 0 0 chr1 67530294 67530315 -129665117 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1100 634 277 7 0 chr1 67531194 67531331 -129664101 - RSINE1 SINE B4 -26 139 2 5 1100 3091 58 2 34 chr1 67531399 67531810 -129663622 + MTB LTR MaLR 1 398 -2 5 1100 371 224 15 0 chr1 67531814 67531881 -129663551 + Lx8 LINE L1 7155 7222 -251 5 1100 183 42 0 0 chr1 67531886 67531910 -129663522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1100 225 259 37 0 chr1 67533626 67533680 -129661752 - MLT1J-int LTR MaLR -983 404 349 5 1100 285 29 0 0 chr1 67534267 67534301 -129661131 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 1100 287 290 85 71 chr1 67534335 67534351 -129661081 + MT2B LTR ERVL 118 133 -468 5 1100 371 290 107 11 chr1 67534351 67534529 -129660903 + B3A SINE B2 4 198 0 5 1100 287 290 85 71 chr1 67534529 67534549 -129660883 + MT2B LTR ERVL 134 156 -445 5 1100 449 295 90 8 chr1 67534549 67534682 -129660750 + B1_Mur1 SINE Alu 1 144 -5 6 1100 236 309 19 9 chr1 67534914 67535022 -129660410 - Lx8 LINE L1 -2 7471 7363 6 1100 2162 184 32 5 chr1 67535217 67535593 -129659839 + MTC LTR MaLR 34 419 -2 6 1100 230 164 0 18 chr1 67536190 67536246 -129659186 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1100 2568 283 58 84 chr1 67536386 67537459 -129657973 - Lx7 LINE L1 -278 7418 6374 6 1100 469 259 128 28 chr1 67537486 67537665 -129657767 + Lx9 LINE L1 5857 6053 -1591 6 1100 1469 202 168 12 chr1 67537692 67538019 -129657413 - ORR1C1 LTR MaLR 0 378 1 6 1100 1711 260 64 2 chr1 67538090 67538556 -129656876 + Lx9 LINE L1 6291 6785 -859 6 1100 258 32 0 0 chr1 67538753 67538784 -129656648 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1100 307 326 57 35 chr1 67538930 67539213 -129656219 + L1MC LINE L1 4394 4682 -1464 6 1100 496 339 11 66 chr1 67539220 67539403 -129656029 + B4 SINE B4 119 291 -1 6 1100 212 0 36 0 chr1 67539639 67539667 -129655765 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 7 1100 1099 82 7 7 chr1 67539667 67539814 -129655618 - B1_Mus2 SINE Alu 0 147 1 7 1100 213 39 0 0 chr1 67539822 67539848 -129655584 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1100 2401 55 0 0 chr1 67539851 67540158 -129655274 - L1Md_A LINE L1 0 6582 6276 7 1100 3503 38 31 2 chr1 67543452 67543876 -129651556 - RLTR10C LTR ERVK 0 436 1 7 1100 278 29 71 29 chr1 67544099 67544169 -129651263 + (TTTTG)n Simple_repeat Simple_repeat 2 74 0 7 1100 675 0 0 0 chr1 67544385 67544460 -129650972 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 7 1100 219 45 21 43 chr1 67544864 67544911 -129650521 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1100 222 0 79 0 chr1 67544911 67544949 -129650483 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 7 1100 243 0 0 0 chr1 67545192 67545219 -129650213 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1100 639 345 41 70 chr1 67545227 67545669 -129649763 + Lx8 LINE L1 7037 7465 -8 8 1100 558 0 0 0 chr1 67545853 67545915 -129649517 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1100 629 335 14 18 chr1 67546707 67546926 -129648506 + B4A SINE B4 74 291 -1 8 1100 321 308 56 7 chr1 67547003 67547147 -129648285 + L1MEf LINE L1 1154 1304 -5105 8 1100 1154 261 77 21 chr1 67547158 67547498 -129647934 - MTE2b LTR MaLR -20 359 1 8 1100 362 243 62 18 chr1 67547692 67547805 -129647627 + MTE2b LTR MaLR 242 359 -20 8 1100 387 304 31 7 chr1 67548079 67548320 -129647112 + L1MEf LINE L1 2275 2516 -3986 8 1100 26 0 0 0 chr1 67548854 67548880 -129646552 + AT_rich Low_complexity Low_complexity 1 26 0 8 1100 635 310 70 41 chr1 67548983 67549299 -129646133 - LTR73 LTR ERV1 -225 347 23 8 1100 1728 215 47 11 chr1 67549407 67549567 -129645865 + ORR1C1 LTR MaLR 3 163 -215 8 1100 660 13 0 0 chr1 67549567 67549644 -129645788 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 1100 1728 215 47 11 chr1 67549644 67549845 -129645587 + ORR1C1 LTR MaLR 164 377 -1 8 1100 843 340 70 25 chr1 67550580 67550978 -129644454 - ORR1E-int LTR MaLR -1163 417 2 9 1100 286 354 53 74 chr1 67551004 67551288 -129644144 - ORR1E LTR MaLR -10 349 72 9 1100 247 361 98 34 chr1 67551673 67551937 -129643495 - B4 SINE B4 -10 282 2 9 1100 466 173 17 39 chr1 67553540 67553720 -129641712 + (TA)n Simple_repeat Simple_repeat 1 176 0 9 1100 304 246 65 50 chr1 67553720 67553783 -129641649 - RMER17C LTR ERVK -131 279 214 9 1100 321 26 0 0 chr1 67553783 67553821 -129641611 + (TA)n Simple_repeat Simple_repeat 1 38 0 9 1100 304 246 65 50 chr1 67553821 67553958 -129641474 - RMER17C LTR ERVK -197 213 76 9 1100 1050 326 84 16 chr1 67554731 67555221 -129640211 - Lx8 LINE L1 -32 7441 6919 9 1100 801 247 117 16 chr1 67555215 67555590 -129639842 + L1_Mur3 LINE L1 4027 4439 -1441 9 1100 21 0 0 0 chr1 67557675 67557696 -129637736 + AT_rich Low_complexity Low_complexity 1 21 0 9 1100 1096 77 12 0 chr1 67557710 67557879 -129637553 + (GA)n Simple_repeat Simple_repeat 2 172 0 9 1100 375 208 0 24 chr1 67558085 67558208 -129637224 + (TG)n Simple_repeat Simple_repeat 2 121 0 9 1100 498 298 25 6 chr1 67558213 67558372 -129637060 - RSINE1 SINE B4 -2 163 2 1 1100 645 14 0 0 chr1 67559517 67559591 -129635841 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1100 1203 279 65 63 chr1 67559595 67560178 -129635254 - Lx5 LINE L1 -26 7434 6485 1 1100 2141 176 187 87 chr1 67560606 67561161 -129634271 - RMER19C LTR ERVK 0 611 1 1 1100 258 111 69 0 chr1 67561498 67561570 -129633862 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 1 1100 447 19 0 0 chr1 67562556 67562608 -129632824 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1100 593 38 12 0 chr1 67562941 67563021 -129632411 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1100 208 119 0 45 chr1 67563025 67563069 -129632363 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 1 1100 505 231 123 0 chr1 67563074 67563204 -129632228 - B1_Mur2 SINE Alu -1 148 3 1 1100 24 0 0 0 chr1 67563466 67563490 -129631942 + AT_rich Low_complexity Low_complexity 1 24 0 1 1100 390 258 22 0 chr1 67563841 67563930 -129631502 + B3A SINE B2 1 91 -107 1 1100 248 306 142 39 chr1 67563950 67564154 -129631278 - L1M5 LINE L1 -616 5624 5400 1 1100 392 0 21 0 chr1 67564724 67564772 -129630660 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1100 489 34 0 0 chr1 67565455 67565514 -129629918 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1100 474 18 0 0 chr1 67565646 67565701 -129629731 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1100 1448 175 70 60 chr1 67565820 67566105 -129629327 - Lx4A LINE L1 -3 7055 6768 1 1100 525 182 0 127 chr1 67566112 67566176 -129629256 - L1_Mur2 LINE L1 -372 5505 5443 1 1100 1218 34 0 0 chr1 67566176 67566322 -129629110 - B1_Mus2 SINE Alu 0 147 2 1 1100 525 182 0 127 chr1 67566322 67566383 -129629049 - L1_Mur2 LINE L1 -435 5442 5396 1 1100 2037 204 139 78 chr1 67567577 67568168 -129627264 + RMER20B LTR ERVK 1 627 0 1 1100 21 0 0 0 chr1 67568880 67568901 -129626531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 678 172 0 0 chr1 67569071 67569199 -129626233 + CT-rich Low_complexity Low_complexity 4 131 0 1 1100 558 334 63 5 chr1 67570370 67570565 -129624867 - B3A SINE B2 -13 203 2 1 1100 187 343 0 15 chr1 67570685 67570753 -129624679 - L3 LINE CR1 -1794 2695 2629 1 1100 205 205 0 0 chr1 67571622 67571661 -129623771 + T-rich Low_complexity Low_complexity 1 39 0 1 1100 205 138 0 0 chr1 67571623 67571652 -129623780 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1 1100 474 313 7 63 chr1 67571868 67572011 -129623421 - ID_B1 SINE B4 -9 215 81 1 1100 750 324 87 30 chr1 67572300 67572828 -129622604 - RMER13A LTR ERVK 0 860 403 1 1100 4727 98 4 10 chr1 67572871 67573562 -129621870 - L1_Mus3 LINE L1 -8 6630 5944 1 1100 1052 119 6 0 chr1 67573563 67573723 -129621709 + L1_Mus3 LINE L1 5799 5959 -679 1 1100 1161 244 126 25 chr1 67573725 67574082 -129621350 - RMER13A LTR ERVK -454 406 14 1 1100 188 252 168 37 chr1 67574492 67574599 -129620833 + MIR SINE MIR 86 206 -56 1 1100 1165 70 0 0 chr1 67575450 67575607 -129619825 - L1Md_F2 LINE L1 -10 6572 6416 1 1100 246 128 0 0 chr1 67576406 67576445 -129618987 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1100 758 308 74 24 chr1 67576860 67577156 -129618276 + L2 LINE L2 1954 2264 -1155 1 1100 346 311 129 55 chr1 67577214 67577524 -129617908 - L1MEc LINE L1 -4047 2353 2021 1 1100 21 0 0 0 chr1 67577967 67577988 -129617444 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 612 0 0 0 chr1 67578132 67578200 -129617232 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1100 405 0 0 0 chr1 67579225 67579270 -129616162 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1100 509 76 0 12 chr1 67579275 67579355 -129616077 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1100 21 0 0 31 chr1 67579719 67579736 -129615696 + AT_rich Low_complexity Low_complexity 1 17 0 1 1100 360 0 0 0 chr1 67579736 67579776 -129615656 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1100 21 0 0 31 chr1 67579776 67579790 -129615642 + AT_rich Low_complexity Low_complexity 1 14 0 1 1100 247 276 88 14 chr1 67579854 67580001 -129615431 + L1M5 LINE L1 2369 2526 -3620 1 1100 627 345 82 75 chr1 67582621 67583244 -129612188 + MLT1-int LTR MaLR 194 820 -551 1 1100 39665 25 2 6 chr1 67583244 67589636 -129605796 - L1Md_A LINE L1 -5 6577 213 1 1100 189 107 0 0 chr1 67589850 67589878 -129605554 + (CAGAGA)n Simple_repeat Simple_repeat 6 33 0 1 1100 671 266 135 16 chr1 67590326 67590578 -129604854 + B4A SINE B4 11 292 0 1 1100 244 190 17 17 chr1 67590647 67590706 -129604726 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1 1100 300 254 40 24 chr1 67590849 67590974 -129604458 + L1MEg LINE L1 981 1107 -4977 1 1100 337 325 47 8 chr1 67591378 67591505 -129603927 - MIR SINE MIR -70 192 61 1 1100 508 325 29 10 chr1 67591555 67591763 -129603669 - B3 SINE B2 0 216 5 1 1100 295 121 0 0 chr1 67592110 67592168 -129603264 + L1Md_F2 LINE L1 6523 6580 -2 1 1100 759 214 0 20 chr1 67592192 67592340 -129603092 - B1F SINE Alu -2 147 3 1 1100 496 134 196 0 chr1 67592540 67592652 -129602780 + URR1A DNA MER1_type 81 214 -12 1 1100 855 55 0 0 chr1 67592777 67592886 -129602546 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 1100 261 254 9 89 chr1 67593416 67593546 -129601886 + ID4 SINE ID 4 120 -32 1 1100 1604 36 5 5 chr1 67593569 67593793 -129601639 - L1Md_F3 LINE L1 0 6584 6362 1 1100 769 69 0 0 chr1 67593794 67593895 -129601537 + L1_Mm LINE L1 4670 4770 -1113 1 1100 241 289 15 59 chr1 67594089 67594225 -129601207 + L1M5 LINE L1 2542 2671 -3475 1 1100 441 0 0 0 chr1 67594554 67594603 -129600829 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1100 546 357 62 62 chr1 67595338 67595693 -129599739 + MLT1E2 LTR MaLR 266 620 -7 1 1100 3491 210 60 50 chr1 67596017 67596910 -129598522 + Lx5 LINE L1 6146 7047 -3 1 1100 306 360 37 0 chr1 67596942 67597078 -129598354 + Lx8 LINE L1 7098 7238 -235 1 1100 210 220 0 0 chr1 67597080 67597139 -129598293 + CT-rich Low_complexity Low_complexity 3 61 0 1 1100 346 345 50 54 chr1 67597172 67597414 -129598018 + Lx8 LINE L1 7231 7471 -2 1 1100 435 38 0 0 chr1 67598992 67599045 -129596387 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1100 477 0 0 0 chr1 67599540 67599593 -129595839 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1100 22 0 0 0 chr1 67599695 67599717 -129595715 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 21 36 0 0 chr1 67600239 67600267 -129595165 + AT_rich Low_complexity Low_complexity 1 28 0 1 1100 4147 73 78 3 chr1 67600313 67600903 -129594529 - L1Md_F2 LINE L1 -5 6577 5944 1 1100 3377 80 4 7 chr1 67601295 67601807 -129593625 + Lx LINE L1 5540 6046 -608 1 1100 351 334 9 2 chr1 67602741 67602858 -129592574 - PB1D7 SINE Alu -22 127 7 1 1100 1471 61 0 0 chr1 67602960 67603140 -129592292 - L1_Mus1 LINE L1 -348 6219 6040 1 1100 2855 51 3 0 chr1 67603140 67603491 -129591941 + L1_Mus1 LINE L1 6216 6567 0 1 1100 712 178 4 22 chr1 67603738 67603968 -129591464 + CT-rich Low_complexity Low_complexity 1 226 0 1 1100 21 0 0 0 chr1 67605746 67605767 -129589665 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 495 48 0 0 chr1 67607574 67607636 -129587796 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 1 1100 330 26 0 0 chr1 67607794 67607833 -129587599 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1100 210 71 0 0 chr1 67607833 67607860 -129587572 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1100 270 0 0 0 chr1 67607889 67607919 -129587513 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1100 231 255 124 67 chr1 67609095 67609200 -129586232 + RSINE1 SINE B4 7 117 -48 1 1100 447 19 0 0 chr1 67610809 67610861 -129584571 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1100 351 0 0 0 chr1 67610861 67610899 -129584533 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1100 26 0 0 0 chr1 67611271 67611297 -129584135 + AT_rich Low_complexity Low_complexity 1 26 0 1 1100 1674 159 7 21 chr1 67611588 67612132 -129583300 - RLTR1D LTR ERV1 0 605 1 1 1100 3666 113 7 0 chr1 67612325 67612883 -129582549 + L1_Mm LINE L1 5231 5792 -91 1 1100 601 91 0 0 chr1 67612883 67612971 -129582461 - L1_Mus1 LINE L1 -473 6094 6007 1 1100 3866 92 6 11 chr1 67612971 67613457 -129581975 + L1_Mus1 LINE L1 6023 6511 -56 1 1100 3504 45 28 0 chr1 67613457 67613881 -129581551 - RLTR10C LTR ERVK 0 436 1 1 1100 3866 92 6 11 chr1 67613881 67613941 -129581491 + L1_Mus1 LINE L1 6512 6566 -1 1 1100 5861 117 6 3 chr1 67613960 67614821 -129580611 + Lx LINE L1 5784 6646 -8 1 1100 21 0 0 0 chr1 67615160 67615181 -129580251 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 349 275 0 90 chr1 67615249 67615349 -129580083 + PB1D9 SINE Alu 23 113 -7 1 1100 497 119 19 19 chr1 67616715 67616818 -129578614 + CT-rich Low_complexity Low_complexity 3 105 0 1 1100 1047 90 28 0 chr1 67616821 67616965 -129578467 - B1_Mus1 SINE Alu 0 148 1 1 1100 885 214 35 20 chr1 67618754 67618954 -129576478 - ORR1D1 LTR MaLR -2 372 170 1 1100 5449 18 1 1 chr1 67618976 67619635 -129575797 - L1_Mm LINE L1 0 5883 5225 1 1100 3031 36 0 0 chr1 67619635 67619995 -129575437 + L1Md_T LINE L1 6223 6582 0 1 1100 931 186 22 5 chr1 67620000 67620184 -129575248 - ORR1D1 LTR MaLR -187 187 1 1 1100 194 0 39 0 chr1 67621475 67621501 -129573931 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1100 1789 214 64 47 chr1 67623765 67624171 -129571261 - MTC LTR MaLR -8 413 1 1 1100 31 0 0 0 chr1 67624192 67624223 -129571209 + AT_rich Low_complexity Low_complexity 1 31 0 1 1100 313 424 8 0 chr1 67624370 67624488 -129570944 - LTR41 LTR ERVL -327 441 323 1 1100 508 330 68 14 chr1 67624530 67624751 -129570681 - LTR41 LTR ERVL -535 233 1 1 1100 237 132 0 0 chr1 67625362 67625400 -129570032 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 1 1100 186 344 53 53 chr1 67625620 67625752 -129569680 + L4 LINE RTE 523 654 -1375 1 1100 826 264 14 19 chr1 67626024 67626236 -129569196 - B3 SINE B2 -5 211 1 1 1100 652 370 84 40 chr1 67626342 67626949 -129568483 + L2 LINE L2 2160 2793 -626 1 1100 318 320 15 15 chr1 67627693 67627823 -129567609 + B1F2 SINE Alu 4 133 -16 1 1100 267 31 0 0 chr1 67627866 67627898 -129567534 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1100 451 53 0 0 chr1 67627938 67627995 -129567437 + MTA_Mm LTR MaLR 1 57 -339 2 1100 456 19 0 0 chr1 67628018 67628071 -129567361 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1100 3344 40 2 0 chr1 67628111 67628506 -129566926 + MTA_Mm LTR MaLR 1 396 0 2 1100 9562 19 2 0 chr1 67628506 67629602 -129565830 + MTA_Mm-int LTR MaLR 1 1098 0 2 1100 3410 33 2 0 chr1 67629602 67629997 -129565435 + MTA_Mm LTR MaLR 1 396 0 2 1100 230 320 10 40 chr1 67630318 67630419 -129565013 + MTE2b LTR MaLR 268 365 -14 2 1100 339 157 0 4 chr1 67631270 67631328 -129564104 + B1_Mus2 SINE Alu 92 150 0 2 1100 261 311 0 0 chr1 67631335 67631396 -129564036 - RSINE1 SINE B4 -2 163 103 2 1100 213 255 20 0 chr1 67631391 67631442 -129563990 - B4 SINE B4 -214 78 27 2 1100 32 0 0 0 chr1 67631584 67631616 -129563816 + AT_rich Low_complexity Low_complexity 1 32 0 2 1101 36621 8 0 0 chr1 67633997 67639162 -129556270 + L1Md_A LINE L1 422 5586 -297 2 1101 8983 6 0 0 chr1 67639162 67640156 -129555276 + L1Md_A LINE L1 5587 6580 -2 2 1101 34 0 0 0 chr1 67640308 67640342 -129555090 + AT_rich Low_complexity Low_complexity 1 34 0 2 1101 498 273 116 33 chr1 67642004 67642076 -129553356 - L1MA6 LINE L1 -395 5905 5835 2 1101 378 0 0 0 chr1 67642076 67642118 -129553314 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1101 498 273 116 33 chr1 67642118 67642442 -129552990 - L1MA6 LINE L1 -466 5834 5477 2 1101 2119 121 20 14 chr1 67642459 67642810 -129552622 - L1_Mus3 LINE L1 -5 6633 6281 2 1101 3928 112 24 2 chr1 67642810 67643426 -129552006 + L1_Mus3 LINE L1 5625 6254 -384 2 1101 257 75 0 24 chr1 67643507 67643548 -129551884 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1101 438 20 0 0 chr1 67643548 67643599 -129551833 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1101 266 377 0 0 chr1 67643601 67643670 -129551762 - ID4_ SINE ID -13 70 2 2 1101 225 88 0 0 chr1 67643809 67643843 -129551589 - L1_Mur3 LINE L1 -483 5397 5364 2 1101 940 151 66 11 chr1 67643826 67644007 -129551425 + Lx2B LINE L1 6480 6670 -330 2 1101 3351 21 0 0 chr1 67643995 67644508 -129550924 - L1Md_T LINE L1 -583 5999 5487 2 1101 5471 41 1 0 chr1 67644508 67645209 -129550223 + L1Md_T LINE L1 5922 6582 0 2 1101 195 42 0 0 chr1 67645324 67645348 -129550084 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1101 1541 177 73 0 chr1 67645348 67645675 -129549757 + Lx2A1 LINE L1 6656 7006 -2 2 1101 544 310 75 31 chr1 67645724 67646207 -129549225 - L1MA6 LINE L1 -792 5351 4848 2 1101 1396 94 5 0 chr1 67646950 67647153 -129548279 - Lx4A LINE L1 -1094 5964 5761 2 1101 683 231 76 9 chr1 67647147 67647370 -129548062 + L1_Mur2 LINE L1 132 369 -6343 2 1101 414 0 0 0 chr1 67649305 67649351 -129546081 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2 1101 450 0 0 0 chr1 67649351 67649401 -129546031 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2 1101 814 190 213 0 chr1 67649404 67649578 -129545854 - B3 SINE B2 -4 212 2 2 1101 259 200 0 39 chr1 67649694 67649746 -129545686 + B1F2 SINE Alu 4 53 -96 2 1101 568 282 13 0 chr1 67649781 67649930 -129545502 + Lx8 LINE L1 7165 7315 -158 2 1101 24 0 0 0 chr1 67650033 67650057 -129545375 + AT_rich Low_complexity Low_complexity 1 24 0 2 1101 22 0 0 0 chr1 67650107 67650129 -129545303 + AT_rich Low_complexity Low_complexity 1 22 0 2 1101 460 184 0 0 chr1 67650133 67650220 -129545212 + Lx3C LINE L1 6882 6968 -8 2 1101 23 54 0 0 chr1 67650226 67650263 -129545169 + AT_rich Low_complexity Low_complexity 1 37 0 2 1101 274 54 0 0 chr1 67650376 67650413 -129545019 - U5 snRNA snRNA -75 41 5 2 1101 5930 37 0 0 chr1 67650413 67651115 -129544317 + L1Md_T LINE L1 5881 6582 0 2 1101 21 36 0 0 chr1 67651466 67651494 -129543938 + AT_rich Low_complexity Low_complexity 1 28 0 2 1101 259 363 62 38 chr1 67651804 67652013 -129543419 + MER20 DNA MER1_type 2 215 -4 2 1101 252 0 0 0 chr1 67653289 67653317 -129542115 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1101 412 318 53 61 chr1 67653579 67653957 -129541475 - Lx8 LINE L1 -15 7458 7084 2 1101 792 175 11 17 chr1 67654449 67654629 -129540803 + GA-rich Low_complexity Low_complexity 2 180 0 2 1101 1620 0 0 0 chr1 67654629 67654809 -129540623 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1101 911 9 9 0 chr1 67654809 67654917 -129540515 + (GAGAA)n Simple_repeat Simple_repeat 1 109 0 2 1101 2320 78 119 11 chr1 67655414 67655766 -129539666 + RLTR10 LTR ERVK 1 390 0 2 1101 329 219 104 0 chr1 67658115 67658211 -129537221 + Lx7 LINE L1 6928 7033 -663 2 1101 209 316 13 26 chr1 67658844 67658922 -129536510 - L2a LINE L2 0 3426 3350 2 1101 388 293 73 0 chr1 67658947 67659070 -129536362 + B1F SINE Alu 3 134 -15 2 1101 210 91 0 0 chr1 67659975 67660008 -129535424 + (CTG)n Simple_repeat Simple_repeat 3 35 0 2 1101 384 204 11 39 chr1 67660008 67660187 -129535245 + CT-rich Low_complexity Low_complexity 2 175 0 2 1101 1224 40 0 0 chr1 67660734 67660884 -129534548 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1101 503 90 13 0 chr1 67661736 67661814 -129533618 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1101 609 307 17 35 chr1 67661829 67662001 -129533431 - B3A SINE B2 -29 169 1 2 1101 362 310 79 9 chr1 67662056 67662170 -129533262 - B4A SINE B4 -170 122 1 2 1101 6540 64 1 1 chr1 67662232 67663094 -129532338 - L1_Mus2 LINE L1 0 6566 5705 2 1101 604 166 13 7 chr1 67663169 67663321 -129532111 - Lx9 LINE L1 -10 7634 7482 2 1101 698 150 58 70 chr1 67663334 67663506 -129531926 - Lx9 LINE L1 -132 7512 7343 2 1101 743 175 3 0 chr1 67663518 67663649 -129531783 - B1_Mur4 SINE Alu -14 136 1 2 1101 360 168 129 89 chr1 67663549 67663673 -129531759 - MT2B LTR ERVL -344 257 129 2 1101 590 211 13 58 chr1 67663678 67663834 -129531598 - Lx9 LINE L1 -327 7317 7169 2 1101 21 0 0 0 chr1 67664660 67664681 -129530751 + AT_rich Low_complexity Low_complexity 1 21 0 2 1101 26 30 0 0 chr1 67664778 67664811 -129530621 + AT_rich Low_complexity Low_complexity 1 33 0 2 1101 26 74 0 0 chr1 67665200 67665254 -129530178 + AT_rich Low_complexity Low_complexity 1 54 0 2 1101 814 285 202 18 chr1 67665508 67665780 -129529652 + MTE2b LTR MaLR 5 326 -53 2 1101 197 214 0 35 chr1 67665794 67665852 -129529580 + CT-rich Low_complexity Low_complexity 5 60 0 2 1101 276 250 80 45 chr1 67665923 67666011 -129529421 + MTE2b LTR MaLR 289 379 0 2 1101 27 29 0 0 chr1 67666044 67666078 -129529354 + AT_rich Low_complexity Low_complexity 1 34 0 2 1101 39307 31 2 6 chr1 67666240 67672433 -129522999 - L1Md_T LINE L1 -3 6579 416 2 1101 6549 192 79 22 chr1 67672490 67673110 -129522322 - Lx5 LINE L1 -2 7048 6403 2 1101 2851 43 54 3 chr1 67673110 67673479 -129521953 + RLTR10 LTR ERVK 1 388 -2 2 1101 6549 175 45 14 chr1 67673479 67674867 -129520565 - Lx5 LINE L1 -648 6402 4942 2 1101 408 371 65 14 chr1 67674881 67675097 -129520335 - MER44D DNA MER2_type -478 227 1 2 1101 24 32 0 0 chr1 67676119 67676150 -129519282 + AT_rich Low_complexity Low_complexity 1 31 0 2 1101 797 246 34 0 chr1 67676422 67676601 -129518831 - Lx8 LINE L1 -919 6554 6370 2 1101 23 0 0 0 chr1 67677083 67677106 -129518326 + AT_rich Low_complexity Low_complexity 1 23 0 2 1101 22 35 0 0 chr1 67677248 67677277 -129518155 + AT_rich Low_complexity Low_complexity 1 29 0 2 1101 8243 135 28 15 chr1 67678982 67680697 -129514735 - Lx3C LINE L1 -2 6974 5238 2 1101 25 31 0 0 chr1 67680736 67680768 -129514664 + AT_rich Low_complexity Low_complexity 1 32 0 2 1101 373 311 28 62 chr1 67681664 67681808 -129513624 - B1_Mur4 SINE Alu -1 149 11 2 1101 247 353 50 39 chr1 67682909 67683083 -129512349 - MLT1A1 LTR MaLR -9 586 405 2 1101 728 284 35 5 chr1 67683156 67683354 -129512078 + B3 SINE B2 1 204 -12 2 1101 261 309 84 21 chr1 67683372 67683514 -129511918 + MLT1A0 LTR MaLR 42 192 -173 2 1101 231 323 107 29 chr1 67683586 67683895 -129511537 + HAL1 LINE L1 1475 1807 -700 2 1101 328 303 26 35 chr1 67684490 67684603 -129510829 - MLT1A1 LTR MaLR -276 132 21 2 1101 562 315 135 59 chr1 67684876 67685217 -129510215 - MTEa LTR MaLR -7 372 6 2 1101 180 216 0 0 chr1 67685408 67685459 -129509973 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1101 1601 32 0 0 chr1 67685628 67685814 -129509618 + B2_Mm1t SINE B2 2 187 -6 2 1101 335 272 96 64 chr1 67687466 67687623 -129507809 + B3A SINE B2 2 163 -35 2 1101 212 188 16 0 chr1 67688604 67688668 -129506764 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1101 483 291 165 25 chr1 67688689 67688932 -129506500 - B4 SINE B4 -12 280 4 2 1101 415 340 107 25 chr1 67689074 67689355 -129506077 - LTR33A LTR ERVL -200 320 17 2 1101 650 122 0 9 chr1 67689524 67689632 -129505800 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 1101 279 281 36 12 chr1 67689637 67689720 -129505712 - MER58B DNA MER1_type -36 305 221 2 1101 502 318 15 0 chr1 67692025 67692157 -129503275 - RSINE1 SINE B4 -28 137 4 2 1101 983 253 113 4 chr1 67692979 67693253 -129502179 + MTD LTR MaLR 114 417 -2 2 1101 518 252 26 25 chr1 67693636 67693784 -129501648 + B3A SINE B2 1 147 -48 2 1101 513 0 0 0 chr1 67693784 67693841 -129501591 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1101 339 278 94 83 chr1 67693841 67693884 -129501548 + B2_Mm2 SINE B2 148 193 -2 2 1101 323 339 155 16 chr1 67695180 67695483 -129499949 + MLT1H LTR MaLR 9 353 -196 2 1101 640 210 260 6 chr1 67695770 67695947 -129499485 + URR1A DNA MER1_type 2 223 -3 2 1101 2089 92 0 61 chr1 67695949 67696275 -129499157 + L1_Mus2 LINE L1 6261 6566 0 2 1101 335 39 59 0 chr1 67696418 67696469 -129498963 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 2 1101 6062 124 33 14 chr1 67696482 67697447 -129497985 - RLTR13C1 LTR ERVK 0 983 1 2 1101 1492 195 91 3 chr1 67698108 67698427 -129497005 - ORR1B2 LTR MaLR -20 347 1 2 1101 234 0 0 0 chr1 67698438 67698464 -129496968 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1101 260 391 98 15 chr1 67699272 67699477 -129495955 - MIRb SINE MIR -46 222 1 2 1101 237 232 120 10 chr1 67700076 67700176 -129495256 - Lx8 LINE L1 -7 7466 7356 2 1101 22 56 0 0 chr1 67700269 67700305 -129495127 + AT_rich Low_complexity Low_complexity 1 36 0 2 1101 545 311 127 82 chr1 67701699 67702130 -129493302 + MLT1D LTR MaLR 3 450 -55 3 1101 2877 63 42 8 chr1 67702130 67702512 -129492920 - MTA_Mm LTR MaLR 0 396 2 3 1101 545 311 127 82 chr1 67702512 67702543 -129492889 + MLT1D LTR MaLR 451 486 -19 3 1101 228 35 0 0 chr1 67702543 67702572 -129492860 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1101 480 330 71 16 chr1 67702799 67703289 -129492143 + L1M5 LINE L1 2437 2953 -3193 3 1101 309 98 0 62 chr1 67703449 67703514 -129491918 - L1Md_F2 LINE L1 -2 6580 6520 3 1101 42 50 0 12 chr1 67703611 67703643 -129491789 + AT_rich Low_complexity Low_complexity 1 32 0 3 1101 2447 70 3 6 chr1 67703643 67703975 -129491457 + L1Md_A LINE L1 6252 6582 0 3 1101 42 50 0 12 chr1 67703975 67704023 -129491409 + AT_rich Low_complexity Low_complexity 1 48 0 3 1101 216 0 0 0 chr1 67704136 67704160 -129491272 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1101 387 56 0 0 chr1 67704483 67704537 -129490895 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 3 1101 705 109 108 8 chr1 67704555 67704684 -129490748 - L1Md_F2 LINE L1 0 6582 6441 3 1101 314 61 0 20 chr1 67705052 67705102 -129490330 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1101 1052 69 0 0 chr1 67706651 67706782 -129488650 + B1_Mus2 SINE Alu 4 134 -13 3 1101 216 0 0 0 chr1 67706782 67706806 -129488626 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1101 274 234 15 15 chr1 67707111 67707176 -129488256 + MLT1A1 LTR MaLR 82 146 -262 3 1101 606 297 190 23 chr1 67707294 67707773 -129487659 + Ricksha_c DNA MuDR 328 886 -1162 3 1101 322 376 28 23 chr1 67708485 67708662 -129486770 - MTEb LTR MaLR -14 365 188 3 1101 233 253 60 0 chr1 67708670 67708753 -129486679 + L1MD LINE L1 5752 5839 -2156 3 1101 24 32 0 0 chr1 67708798 67708829 -129486603 + AT_rich Low_complexity Low_complexity 1 31 0 3 1101 730 277 46 51 chr1 67708829 67709046 -129486386 - MTE2a LTR MaLR -8 371 156 3 1101 1419 159 74 4 chr1 67709046 67709304 -129486128 - Lx5 LINE L1 -1119 5931 5656 3 1101 2784 241 92 0 chr1 67709291 67709908 -129485524 + Lx5 LINE L1 6372 7045 -5 3 1101 520 301 34 48 chr1 67710875 67711084 -129484348 - RMER12 LTR ERVK 0 1322 1117 3 1101 3943 217 98 76 chr1 67711172 67711563 -129483869 - RMER12 LTR ERVK -85 1237 794 3 1101 2186 118 14 36 chr1 67711563 67711925 -129483507 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1101 3943 217 98 76 chr1 67711925 67712743 -129482689 - RMER12 LTR ERVK -529 793 1 3 1101 5726 96 8 1 chr1 67713317 67714114 -129481318 - L1_Mus1 LINE L1 -1 6566 5765 3 1101 2818 79 0 3 chr1 67714114 67714481 -129480951 + L1_Mus1 LINE L1 5381 5746 -137 3 1101 763 278 10 5 chr1 67714481 67714690 -129480742 + B3 SINE B2 6 216 0 3 1101 318 50 0 0 chr1 67714945 67714985 -129480447 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1101 262 346 182 10 chr1 67715094 67715479 -129479953 - L2 LINE L2 -1075 2344 1894 3 1101 777 301 9 50 chr1 67715626 67715846 -129479586 + B3A SINE B2 6 216 0 3 1101 472 351 95 111 chr1 67716509 67716943 -129478489 - MLT1F2 LTR MaLR -3 651 128 3 1101 1039 82 190 0 chr1 67716943 67717101 -129478331 - B2_Mm1t SINE B2 -5 188 1 3 1101 472 346 100 119 chr1 67717101 67717139 -129478293 - MLT1F2 LTR MaLR -433 127 98 3 1101 198 103 0 0 chr1 67717605 67717634 -129477798 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1101 267 337 91 17 chr1 67718281 67718456 -129476976 + MER110A LTR ERV1 214 401 -67 3 1101 390 365 7 7 chr1 67718560 67718706 -129476726 + Lx8 LINE L1 7227 7372 -101 3 1101 198 0 0 0 chr1 67718773 67718795 -129476637 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1101 446 277 15 44 chr1 67718818 67718954 -129476478 + B1_Mur2 SINE Alu 12 143 -6 3 1101 440 361 11 11 chr1 67718971 67719153 -129476279 + B3A SINE B2 1 182 -16 3 1101 26 50 0 0 chr1 67719172 67719212 -129476220 + AT_rich Low_complexity Low_complexity 1 40 0 3 1101 3789 53 0 10 chr1 67719214 67719694 -129475738 + L1Md_F3 LINE L1 6095 6569 -15 3 1101 1796 243 57 50 chr1 67721034 67721510 -129473922 - Lx7 LINE L1 -645 7051 6573 3 1101 222 116 0 0 chr1 67724463 67724506 -129470926 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1101 2892 194 65 23 chr1 67724900 67725516 -129469916 + RLTR26 LTR ERVK 1 642 0 3 1101 335 284 134 28 chr1 67725516 67725733 -129469699 + L1MA7 LINE L1 5794 6033 -258 3 1101 562 261 31 13 chr1 67725776 67725935 -129469497 - Lx9 LINE L1 -245 7399 7238 3 1101 603 62 0 0 chr1 67726216 67726296 -129469136 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1101 354 324 80 23 chr1 67726462 67726888 -129468544 + L1M5 LINE L1 5325 5785 -659 3 1101 657 126 0 0 chr1 67727033 67727144 -129468288 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 1101 1183 140 0 5 chr1 67727282 67727476 -129467956 + B2_Mm2 SINE B2 2 194 -1 3 1101 206 255 0 0 chr1 67728004 67728051 -129467381 + GA-rich Low_complexity Low_complexity 3 49 0 3 1101 40150 18 0 6 chr1 67729158 67735335 -129460097 - L1Md_A LINE L1 0 6582 446 3 1101 186 103 0 0 chr1 67735507 67735536 -129459896 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1101 230 355 69 36 chr1 67735671 67735883 -129459549 + MIR SINE MIR 48 260 -2 3 1101 22 35 0 0 chr1 67735926 67735955 -129459477 + AT_rich Low_complexity Low_complexity 1 29 0 3 1101 294 29 0 0 chr1 67736108 67736143 -129459289 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1101 3908 171 7 10 chr1 67736182 67736867 -129458565 - Lx4A LINE L1 -1 7057 6375 3 1101 3426 140 6 0 chr1 67736867 67737390 -129458042 + Lx4A LINE L1 5841 6366 -692 3 1101 920 178 95 8 chr1 67737508 67737712 -129457720 - Lx3B LINE L1 0 7058 6768 3 1101 3721 140 11 7 chr1 67737679 67738299 -129457133 - Lx3B LINE L1 -436 6537 5915 3 1101 1905 147 116 25 chr1 67738296 67738572 -129456860 + L1_Mm LINE L1 5457 5770 -113 3 1101 3243 52 35 7 chr1 67738572 67738996 -129456436 + RLTR10C LTR ERVK 1 436 0 3 1101 1905 147 116 25 chr1 67738996 67739082 -129456350 + L1_Mm LINE L1 5771 5852 -31 3 1101 198 103 0 0 chr1 67739819 67739848 -129455584 + (TTC)n Simple_repeat Simple_repeat 3 31 0 3 1101 298 227 15 22 chr1 67740054 67740189 -129455243 + (TA)n Simple_repeat Simple_repeat 2 135 0 3 1101 1237 99 0 0 chr1 67740885 67741057 -129454375 - L1_Mur1 LINE L1 -1660 4226 4055 3 1101 3699 120 132 6 chr1 67741033 67741664 -129453768 + Lx3A LINE L1 6262 6971 -10 3 1101 16838 167 119 29 chr1 67741676 67747234 -129448198 + Lx LINE L1 548 6651 -3 3 1101 204 146 0 59 chr1 67747239 67747290 -129448142 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 1101 21 0 0 0 chr1 67747320 67747341 -129448091 + AT_rich Low_complexity Low_complexity 1 21 0 3 1101 4372 60 4 0 chr1 67747626 67748179 -129447253 - L1Md_F2 LINE L1 -12 6570 6016 3 1101 25 65 0 0 chr1 67748947 67748993 -129446439 + AT_rich Low_complexity Low_complexity 1 46 0 3 1101 29 0 0 0 chr1 67749264 67749293 -129446139 + AT_rich Low_complexity Low_complexity 1 29 0 3 1101 307 282 84 89 chr1 67749299 67749478 -129445954 - MLT1K LTR MaLR -58 537 360 3 1101 262 357 12 12 chr1 67749971 67750056 -129445376 - MLT1H LTR MaLR -83 466 382 3 1101 21 36 0 0 chr1 67750639 67750667 -129444765 + AT_rich Low_complexity Low_complexity 1 28 0 3 1101 346 348 107 51 chr1 67750933 67751130 -129444302 + MER47B DNA MER2_type 73 280 -138 3 1101 2890 45 0 0 chr1 67752960 67753312 -129442120 - L1Md_T LINE L1 0 6582 6231 3 1101 6332 98 21 69 chr1 67753332 67755073 -129440359 - L1_Mus3 LINE L1 -1 6637 4982 3 1101 437 50 0 16 chr1 67755154 67755215 -129440217 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1101 2469 210 34 30 chr1 67755371 67756012 -129439420 - Lx2B LINE L1 -277 6699 6113 3 1101 5308 89 63 98 chr1 67756012 67756938 -129438494 - RLTR13B1 LTR ERVK 0 893 1 3 1101 2386 228 23 124 chr1 67756938 67757172 -129438260 - Lx2B LINE L1 -864 6112 5913 3 1101 786 266 112 0 chr1 67757166 67757407 -129438025 + Lx3C LINE L1 6707 6974 -2 3 1101 399 331 44 28 chr1 67757508 67757688 -129437744 - MLT1D LTR MaLR -6 499 317 3 1101 2730 178 148 80 chr1 67757856 67758546 -129436886 + RMER19A LTR ERVK 1 737 0 3 1101 878 95 0 0 chr1 67758915 67759031 -129436401 - L1_Mus4 LINE L1 -345 6291 6176 3 1101 4230 73 0 4 chr1 67759022 67759571 -129435861 + L1_Mus4 LINE L1 5620 6166 -470 3 137 33454 70 5 18 chr1 67760263 67765428 -129430004 + L1Md_F2 LINE L1 489 5585 -298 3 1102 7885 55 3 0 chr1 67765429 67766410 -129429022 + L1Md_F2 LINE L1 5587 6570 -12 3 1102 4388 82 2 7 chr1 67766410 67767011 -129428421 + L1Md_F2 LINE L1 4988 5585 -298 3 1102 7917 54 0 3 chr1 67767012 67767999 -129427433 + L1Md_F2 LINE L1 5587 6570 -12 3 1102 357 348 78 70 chr1 67768149 67768470 -129426962 - MLT1D LTR MaLR -146 302 5 3 1102 272 309 0 0 chr1 67769213 67769294 -129426138 + MLT1J2 LTR MaLR 368 448 0 3 1102 409 31 62 0 chr1 67769296 67769361 -129426071 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 3 1102 869 308 9 0 chr1 67770361 67770572 -129424860 - B3 SINE B2 -2 214 2 3 1102 735 357 7 15 chr1 67773040 67773286 -129422146 - MTE2b LTR MaLR -122 257 11 3 1102 631 261 45 45 chr1 67773442 67773687 -129421745 - Lx7 LINE L1 0 7696 7452 3 1102 253 133 0 62 chr1 67773691 67773771 -129421661 + GA-rich Low_complexity Low_complexity 3 77 0 3 1102 903 147 0 17 chr1 67773774 67773894 -129421538 + polypurine Low_complexity Low_complexity 3 120 0 3 1102 1503 28 0 0 chr1 67773894 67774074 -129421358 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1102 903 147 0 17 chr1 67774074 67774133 -129421299 + polypurine Low_complexity Low_complexity 121 179 0 3 1102 294 210 16 0 chr1 67774139 67774201 -129421231 + GA-rich Low_complexity Low_complexity 1 63 0 3 1102 1083 188 3 191 chr1 67774217 67774553 -129420879 - Lx7 LINE L1 -224 7472 7200 3 1102 320 349 157 29 chr1 67775256 67775569 -129419863 - L1M5 LINE L1 -3188 2958 2606 3 1102 29 47 0 0 chr1 67775648 67775691 -129419741 + AT_rich Low_complexity Low_complexity 1 43 0 3 1102 239 257 34 50 chr1 67775837 67775956 -129419476 - L1M5 LINE L1 -3920 2226 2110 3 1102 21 0 0 0 chr1 67776018 67776039 -129419393 + AT_rich Low_complexity Low_complexity 1 21 0 3 1102 31447 61 1 13 chr1 67776149 67781009 -129414423 - L1Md_F2 LINE L1 -12 6570 1776 3 1102 1342 68 5 10 chr1 67781023 67781217 -129414215 - L1Md_F2 LINE L1 -12 6570 6378 3 1102 228 338 61 24 chr1 67781593 67781675 -129413757 - B1F2 SINE Alu -64 85 1 3 1102 195 42 0 0 chr1 67782354 67782378 -129413054 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1102 269 325 12 0 chr1 67782655 67782735 -129412697 - ID4 SINE ID 0 83 3 4 1102 514 313 25 14 chr1 67782778 67782955 -129412477 + B3A SINE B2 40 216 0 4 1102 270 290 96 21 chr1 67783228 67783415 -129412017 - L1MEd LINE L1 -3519 2627 2427 4 1102 207 0 0 0 chr1 67783989 67784012 -129411420 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1102 318 302 173 23 chr1 67784598 67784818 -129410614 - L1MEd LINE L1 -4874 1262 1010 4 1102 287 173 12 0 chr1 67784891 67784972 -129410460 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1102 2044 313 40 57 chr1 67785362 67785652 -129409780 - L1_Mur3 LINE L1 -121 5759 5469 4 1102 2953 84 14 14 chr1 67785652 67786073 -129409359 - BGLII LTR ERVK 0 421 1 4 1102 2044 313 40 57 chr1 67786073 67787056 -129408376 - L1_Mur3 LINE L1 -412 5468 4507 4 1102 192 120 60 0 chr1 67787100 67787150 -129408282 + GA-rich Low_complexity Low_complexity 1 53 0 4 1102 1218 246 66 51 chr1 67787529 67788000 -129407432 - L1_Mur3 LINE L1 -1414 4466 3989 4 1102 3567 149 40 2 chr1 67788251 67788843 -129406589 - Lx2B LINE L1 -6 6994 6380 4 1102 226 271 34 0 chr1 67788843 67788902 -129406530 - L1_Mur1 LINE L1 -4200 1686 1626 4 1102 198 0 0 0 chr1 67789148 67789170 -129406262 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4 1102 1663 182 68 60 chr1 67789519 67789790 -129405642 - ORR1C2 LTR MaLR 0 384 111 4 1102 4875 43 0 0 chr1 67789790 67790376 -129405056 - L1Md_T LINE L1 0 6582 5997 4 1102 1663 182 68 60 chr1 67790376 67790485 -129404947 - ORR1C2 LTR MaLR -274 110 1 4 1102 1415 199 19 18 chr1 67791086 67791374 -129404058 - ORR1B1 LTR MaLR -8 386 94 4 1102 339 194 30 0 chr1 67791326 67791393 -129404039 - MT2C_Mm LTR ERVL -406 69 1 4 1102 1737 226 59 72 chr1 67791428 67791986 -129403446 - RMER13B LTR ERVK -86 822 272 4 1102 1786 188 36 32 chr1 67791992 67792431 -129403001 - RMER17B LTR ERVK -517 441 1 4 1102 1940 147 0 0 chr1 67792507 67792821 -129402611 - L1_Mus3 LINE L1 -396 5487 5174 4 1102 7266 105 3 13 chr1 67792812 67793954 -129401478 + L1_Mus3 LINE L1 5507 6637 -1 4 1102 6589 78 16 3 chr1 67794282 67795171 -129400261 - L1Md_F2 LINE L1 -12 6570 5671 4 1102 21 36 0 0 chr1 67795463 67795491 -129399941 + AT_rich Low_complexity Low_complexity 1 28 0 4 1102 976 297 18 117 chr1 67796506 67796806 -129398626 - ORR1E LTR MaLR -5 354 81 4 1102 3920 42 6 2 chr1 67796806 67797286 -129398146 - L1Md_F3 LINE L1 -14 6570 6089 4 1102 976 297 18 117 chr1 67797286 67797378 -129398054 - ORR1E LTR MaLR -279 80 1 4 1102 1348 68 0 45 chr1 67797820 67798019 -129397413 + L1_Mus1 LINE L1 6365 6554 -13 4 1102 2772 27 89 0 chr1 67798019 67798356 -129397076 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1102 54986 25 15 7 chr1 67798356 67804774 -129390658 - IAPEz-int LTR ERVK 0 6481 8 4 1102 2772 27 89 0 chr1 67804774 67805111 -129390321 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1102 587 323 49 57 chr1 67805252 67805498 -129389934 - B4A SINE B4 -44 248 5 4 1102 44 0 0 0 chr1 67806679 67806723 -129388709 + AT_rich Low_complexity Low_complexity 1 44 0 4 1102 420 219 21 0 chr1 67806733 67806829 -129388603 - PB1D10 SINE Alu -14 103 6 4 1102 29 0 0 0 chr1 67807043 67807072 -129388360 + AT_rich Low_complexity Low_complexity 1 29 0 4 1102 1741 105 8 4 chr1 67808647 67808905 -129386527 - L1_Mus4 LINE L1 -10 6626 6368 4 1102 423 0 0 0 chr1 67809723 67809770 -129385662 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1102 2885 317 81 27 chr1 67810395 67811757 -129383675 - Lx8 LINE L1 -5 7468 6034 4 1102 3140 54 10 5 chr1 67811760 67812154 -129383278 - MTA_Mm LTR MaLR 0 396 1 4 1102 24 0 0 0 chr1 67812205 67812229 -129383203 + AT_rich Low_complexity Low_complexity 1 24 0 4 1102 352 281 55 67 chr1 67813112 67813276 -129382156 + RLTR9B LTR ERVK 276 437 0 4 1102 710 309 24 57 chr1 67813341 67813639 -129381793 + B4A SINE B4 1 288 -4 4 1102 360 111 0 0 chr1 67813778 67813832 -129381600 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1102 22 0 0 0 chr1 67813848 67813870 -129381562 + AT_rich Low_complexity Low_complexity 1 22 0 4 1102 25 0 0 0 chr1 67815298 67815323 -129380109 + AT_rich Low_complexity Low_complexity 1 25 0 4 1102 738 320 47 32 chr1 67815494 67815772 -129379660 + B4A SINE B4 6 287 -5 4 1102 225 0 0 0 chr1 67815833 67815858 -129379574 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1102 399 21 0 0 chr1 67815858 67815906 -129379526 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1102 639 221 164 0 chr1 67816074 67816214 -129379218 - B3A SINE B2 -34 164 2 4 1102 23 0 0 0 chr1 67816903 67816926 -129378506 + AT_rich Low_complexity Low_complexity 1 23 0 4 1102 446 326 14 0 chr1 67817389 67817527 -129377905 + B1_Mur2 SINE Alu 10 149 0 4 1102 231 160 96 39 chr1 67818027 67818079 -129377353 - MIR SINE MIR -118 144 90 4 1102 24 53 0 0 chr1 67818355 67818393 -129377039 + AT_rich Low_complexity Low_complexity 1 38 0 4 1102 564 89 0 0 chr1 67818716 67818795 -129376637 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 1102 210 285 0 0 chr1 67818812 67818949 -129376483 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1102 218 314 10 10 chr1 67818952 67819055 -129376377 + (CATA)n Simple_repeat Simple_repeat 2 104 0 4 1102 2170 174 74 50 chr1 67819065 67819608 -129375824 - RLTR31_Mm LTR ERVK 0 561 6 4 1102 300 53 0 0 chr1 67819609 67819647 -129375785 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1102 2694 252 48 68 chr1 67820475 67821065 -129374367 + L1_Mur3 LINE L1 515 1273 -6455 4 1102 1413 130 95 4 chr1 67821065 67821327 -129374105 + Lx2 LINE L1 6710 6995 -2 4 1102 2694 204 61 89 chr1 67821327 67821661 -129373771 + L1_Mur3 LINE L1 1274 1562 -4318 4 1102 4670 83 0 20 chr1 67821661 67822312 -129373120 + L1Md_F2 LINE L1 5933 6570 -12 4 1102 2694 204 61 89 chr1 67822312 67822787 -129372645 + L1_Mur3 LINE L1 1563 2081 -3799 4 1102 181 192 132 19 chr1 67823035 67823088 -129372344 - L3 LINE CR1 -3712 777 719 4 1102 326 302 61 15 chr1 67823586 67823717 -129371715 + RMER15 LTR ERVL 439 575 0 4 1102 291 294 58 58 chr1 67824485 67824691 -129370741 - L1ME2z LINE L1 -5 6439 6234 4 1102 1800 39 22 4 chr1 67824792 67825024 -129370408 + L1Md_F3 LINE L1 6349 6584 0 4 1102 233 319 40 46 chr1 67825394 67825545 -129369887 - L1ME2z LINE L1 -325 6119 5970 4 1102 186 43 0 0 chr1 67825560 67825583 -129369849 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1102 4635 109 46 0 chr1 67826295 67826972 -129368460 - Lx2B LINE L1 -1 6999 6292 4 1102 240 314 46 0 chr1 67827193 67827346 -129368086 - L1ME2z LINE L1 -1015 5429 5270 4 1102 398 280 47 6 chr1 67827641 67827810 -129367622 + L1ME1 LINE L1 3773 3948 -2198 4 1102 474 346 21 93 chr1 67828526 67828762 -129366670 + MTEb LTR MaLR 1 219 -160 4 1102 4259 158 13 35 chr1 67828769 67829535 -129365897 + RMER6A LTR ERVK 1 749 -7 4 1102 207 69 0 0 chr1 67829552 67829581 -129365851 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 4 1102 1473 62 0 10 chr1 67829631 67829827 -129365605 + B2_Mm2 SINE B2 2 195 0 4 1102 2683 85 26 8 chr1 67829865 67830256 -129365176 - L1_Mur1 LINE L1 -255 5631 5234 4 1102 21 71 0 0 chr1 67830752 67830794 -129364638 + AT_rich Low_complexity Low_complexity 1 42 0 4 1102 287 289 92 38 chr1 67831174 67831451 -129363981 + L1ME1 LINE L1 5627 5920 -259 4 1102 510 258 47 56 chr1 67831475 67831709 -129363723 - Lx6 LINE L1 -1 7695 7277 4 1102 1284 95 0 4 chr1 67831709 67831931 -129363501 + (GAAA)n Simple_repeat Simple_repeat 1 221 0 4 1102 227 156 0 0 chr1 67832195 67832227 -129363205 + tRNA-Ala-GCY_ tRNA tRNA 4 35 -40 4 1102 249 295 45 54 chr1 67832579 67832690 -129362742 + MLT1K LTR MaLR 286 395 -200 4 1102 24 91 0 0 chr1 67833840 67833906 -129361526 + AT_rich Low_complexity Low_complexity 1 66 0 4 1102 24 67 0 0 chr1 67834012 67834057 -129361375 + AT_rich Low_complexity Low_complexity 1 45 0 4 1102 375 23 0 0 chr1 67834153 67834197 -129361235 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1102 393 291 155 27 chr1 67834398 67834656 -129360776 + L1M5 LINE L1 4890 5180 -966 4 1102 737 200 250 6 chr1 67834828 67835004 -129360428 - URR1B DNA MER1_type -6 219 1 4 1102 23 78 0 0 chr1 67835591 67835642 -129359790 + AT_rich Low_complexity Low_complexity 1 51 0 4 1102 905 247 70 49 chr1 67835643 67835928 -129359504 + MTD LTR MaLR 1 291 -128 4 1102 5532 113 32 27 chr1 67835963 67836879 -129358553 + Lx3C LINE L1 6050 6969 -7 4 1102 21 0 0 0 chr1 67836888 67836909 -129358523 + AT_rich Low_complexity Low_complexity 1 21 0 4 1102 784 196 5 11 chr1 67837356 67837503 -129357929 - ORR1B1 LTR MaLR 0 421 256 4 1102 856 203 88 136 chr1 67837577 67837850 -129357582 - ORR1B1 LTR MaLR -125 269 10 4 1102 22 0 0 0 chr1 67838414 67838436 -129356996 + AT_rich Low_complexity Low_complexity 1 22 0 4 1102 22 0 0 0 chr1 67838554 67838576 -129356856 + AT_rich Low_complexity Low_complexity 1 22 0 4 1102 264 259 37 70 chr1 67838602 67838716 -129356716 - MIR SINE MIR -107 161 60 4 1102 359 284 66 49 chr1 67838760 67838986 -129356446 - L1MC5 LINE L1 -105 7856 7627 4 1102 264 242 15 29 chr1 67839037 67839105 -129356327 - MER117 DNA MER1_type -111 86 20 4 1102 422 255 63 9 chr1 67839096 67839207 -129356225 + MER117 DNA MER1_type 73 189 -8 4 1102 283 245 11 11 chr1 67839625 67839720 -129355712 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1102 3587 283 52 41 chr1 67839721 67840928 -129354504 - Lx8 LINE L1 -23 7450 6230 4 1102 261 98 0 0 chr1 67840966 67841007 -129354425 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1102 1545 110 8 16 chr1 67841149 67841398 -129354034 - L1Md_F2 LINE L1 0 6582 6336 4 1102 459 0 0 0 chr1 67843644 67843695 -129351737 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 4 1102 287 136 0 17 chr1 67843696 67843756 -129351676 + (CATA)n Simple_repeat Simple_repeat 1 59 0 4 1102 497 144 19 58 chr1 67844540 67844643 -129350789 - B1_Mur3 SINE Alu -11 138 40 4 1102 564 205 0 0 chr1 67844646 67844807 -129350625 + CT-rich Low_complexity Low_complexity 1 161 0 4 1102 225 228 0 34 chr1 67844810 67844869 -129350563 - PB1D9 SINE Alu -62 58 2 4 1102 339 25 0 0 chr1 67846423 67846463 -129348969 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1102 607 320 28 6 chr1 67846468 67846644 -129348788 - B3A SINE B2 -18 180 1 4 1102 261 0 0 0 chr1 67846682 67846711 -129348721 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1102 1646 85 10 0 chr1 67846757 67846995 -129348437 - L1_Mus2 LINE L1 -435 6131 5904 5 1102 3407 78 2 11 chr1 67846995 67847459 -129347973 + L1_Mus2 LINE L1 6107 6566 0 5 1102 240 235 141 87 chr1 67848501 67848521 -129346911 + ID_B1 SINE B4 68 224 0 5 1102 276 215 209 62 chr1 67848521 67848650 -129346782 + B1F SINE Alu 1 148 -1 5 1102 274 364 15 37 chr1 67849973 67850107 -129345325 + MER5B DNA MER1_type 1 131 -47 5 1102 214 50 0 48 chr1 67850313 67850355 -129345077 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1102 1035 0 0 0 chr1 67850360 67850475 -129344957 + (TC)n Simple_repeat Simple_repeat 2 116 0 5 1102 254 194 0 16 chr1 67851911 67851974 -129343458 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1102 587 277 136 63 chr1 67852001 67852400 -129343032 - MLT2B4 LTR ERVL -77 479 1 5 1102 1623 225 27 24 chr1 67854668 67855041 -129340391 - ORR1D1 LTR MaLR 0 374 1 5 1102 240 348 106 49 chr1 67855625 67855767 -129339665 - MER5A DNA MER1_type 0 189 40 5 1102 387 0 0 0 chr1 67857358 67857401 -129338031 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1102 2257 302 51 26 chr1 67857406 67857438 -129337994 - Lx9 LINE L1 -144 7500 7463 5 1102 576 111 0 0 chr1 67857438 67857528 -129337904 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1102 2257 302 51 26 chr1 67857528 67858390 -129337042 - Lx9 LINE L1 -182 7462 6583 5 1102 840 240 36 18 chr1 67859016 67859237 -129336195 + URR1B DNA MER1_type 1 225 0 5 1102 22 35 0 0 chr1 67859967 67859996 -129335436 + AT_rich Low_complexity Low_complexity 1 29 0 5 1102 1942 185 71 13 chr1 67860135 67860529 -129334903 + MTC LTR MaLR 1 417 -4 5 1102 5400 169 65 9 chr1 67860529 67861585 -129333847 + Lx2 LINE L1 5883 6997 0 5 1102 447 364 31 0 chr1 67861727 67861889 -129333543 + Lx8 LINE L1 7144 7310 -163 5 1102 288 296 86 0 chr1 67862117 67862198 -129333234 - RSINE1 SINE B4 -25 140 53 5 1102 1729 165 15 61 chr1 67862376 67862718 -129332714 - ORR1A3 LTR MaLR 0 326 1 5 1102 288 0 0 0 chr1 67862894 67862926 -129332506 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1102 629 316 90 12 chr1 67862943 67863525 -129331907 - L1PB4 LINE L1 -228 5928 5262 5 1102 868 288 81 36 chr1 67863880 67864273 -129331159 + Lx8 LINE L1 6982 7392 -81 5 1102 574 228 52 59 chr1 67864287 67864491 -129330941 + MT2A LTR ERVL 342 584 -17 5 1102 2004 188 16 0 chr1 67864547 67864920 -129330512 - RLTR30 LTR ERV1 0 379 1 5 1102 1720 155 144 12 chr1 67866312 67866658 -129328774 + ORR1B1 LTR MaLR 1 392 -2 5 1102 261 259 35 43 chr1 67869079 67869220 -129326212 + RLTR14-int LTR ERV1 4898 5037 -280 5 1102 1826 204 27 0 chr1 67869346 67869714 -129325718 - RLTR30 LTR ERV1 -1 378 1 5 1102 216 255 0 0 chr1 67870051 67870102 -129325330 + GA-rich Low_complexity Low_complexity 3 53 0 5 1102 257 298 59 27 chr1 67870198 67870401 -129325031 + MIRb SINE MIR 7 268 0 5 1102 21 0 0 0 chr1 67870520 67870541 -129324891 + AT_rich Low_complexity Low_complexity 1 21 0 5 1102 23 54 0 0 chr1 67870720 67870757 -129324675 + AT_rich Low_complexity Low_complexity 1 37 0 5 1102 21 36 0 0 chr1 67870947 67870975 -129324457 + AT_rich Low_complexity Low_complexity 1 28 0 5 1102 951 165 46 10 chr1 67871667 67871863 -129323569 - Lx3_Mus LINE L1 0 7009 6807 5 1102 7050 70 42 10 chr1 67871863 67872190 -129323242 + L1_Mur1 LINE L1 4411 4736 -1150 5 1102 303 28 0 0 chr1 67872190 67872226 -129323206 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1102 7050 70 42 10 chr1 67872226 67872239 -129323193 + L1_Mur1 LINE L1 4737 4752 -1134 5 1102 180 0 0 0 chr1 67872239 67872259 -129323173 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 5 1102 7050 70 42 10 chr1 67872259 67872925 -129322507 + L1_Mur1 LINE L1 4753 5449 -437 5 1102 664 241 65 51 chr1 67872988 67873202 -129322230 + Lx6 LINE L1 6912 7128 -332 5 1102 4415 43 0 7 chr1 67874475 67875018 -129320414 - L1Md_F2 LINE L1 -2 6580 6042 5 1102 34070 62 2 5 chr1 67875029 67876503 -129318929 - L1Md_Gf LINE L1 -191 5695 4221 5 1102 3554 77 0 0 chr1 67876503 67876969 -129318463 - L1Md_T LINE L1 0 6582 6117 5 1102 34070 67 2 5 chr1 67876969 67880544 -129314888 - L1Md_Gf LINE L1 -1666 4220 563 5 1102 393 119 0 0 chr1 67880577 67880636 -129314796 - L1Md_Gf LINE L1 -6282 337 279 5 1102 3079 192 24 2 chr1 67880636 67881273 -129314159 - L1Md_A LINE L1 -5652 1072 422 5 1102 183 383 73 32 chr1 67881675 67881799 -129313633 - L3 LINE CR1 -376 4113 3985 5 1102 219 231 0 0 chr1 67881832 67881884 -129313548 + T-rich Low_complexity Low_complexity 2 53 0 5 1102 610 328 48 66 chr1 67882028 67882361 -129313071 - MLT2C1 LTR ERVL -66 331 5 5 1102 1854 78 0 4 chr1 67882489 67882746 -129312686 - L1Md_F2 LINE L1 0 6582 6327 5 1102 713 224 0 20 chr1 67883533 67883683 -129311749 + B1_Mur3 SINE Alu 2 148 -1 5 1102 252 120 0 0 chr1 67883683 67883733 -129311699 + (CAAAC)n Simple_repeat Simple_repeat 5 54 0 5 1102 606 304 96 75 chr1 67884090 67884435 -129310997 - ORR1E LTR MaLR -1 358 7 5 1102 838 236 82 5 chr1 67884440 67884636 -129310796 - MTE-int LTR MaLR -76 1504 1294 5 1102 1111 261 18 126 chr1 67884644 67885025 -129310407 - ORR1E LTR MaLR -5 354 15 5 1102 2361 342 77 44 chr1 67885035 67885366 -129310066 - MTE-int LTR MaLR -307 1273 939 5 1102 1860 179 45 63 chr1 67885366 67885765 -129309667 + ORR1B1 LTR MaLR 1 392 -2 5 1102 2361 342 77 44 chr1 67885765 67886664 -129308768 - MTE-int LTR MaLR -642 938 2 5 1102 614 291 0 12 chr1 67886807 67886974 -129308458 - ORR1E LTR MaLR -189 170 6 5 1102 215 0 41 82 chr1 67887206 67887255 -129308177 + (TTTTTG)n Simple_repeat Simple_repeat 5 51 0 5 1102 338 378 0 8 chr1 67887683 67887803 -129307629 + MER20 DNA MER1_type 99 217 -2 5 1102 318 26 0 0 chr1 67887926 67887965 -129307467 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1102 459 52 0 0 chr1 67889560 67889618 -129305814 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1102 1216 78 0 22 chr1 67889621 67889805 -129305627 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1102 355 297 11 0 chr1 67890039 67890130 -129305302 + MER5A DNA MER1_type 97 188 -1 5 1102 435 326 81 62 chr1 67890424 67890633 -129304799 + B3A SINE B2 1 213 -3 5 1102 250 274 0 16 chr1 67891755 67891818 -129303614 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 5 1102 583 273 98 31 chr1 67891833 67892026 -129303406 + B3 SINE B2 1 206 -10 5 1102 707 247 137 0 chr1 67892807 67892997 -129302435 + B3 SINE B2 1 216 0 5 1102 663 48 0 0 chr1 67893153 67893236 -129302196 + (GGA)n Simple_repeat Simple_repeat 2 84 0 5 1102 454 203 15 0 chr1 67893284 67893417 -129302015 + GA-rich Low_complexity Low_complexity 1 135 0 5 137 217 284 0 0 chr1 67895272 67895339 -129300093 + L2a LINE L2 3321 3426 0 5 1103 197 119 24 0 chr1 67895586 67895628 -129299804 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 5 1103 228 404 49 5 chr1 67896522 67896706 -129298726 - LTR89 LTR ERVL? -16 863 672 5 1103 249 316 125 28 chr1 67896771 67896947 -129298485 - MIRb SINE MIR -67 201 9 5 1103 792 159 0 29 chr1 67897180 67897316 -129298116 - B1_Mus1 SINE Alu -15 133 2 5 1103 538 280 8 0 chr1 67897380 67897498 -129297934 + MER70B LTR ERVL 69 187 -391 5 1103 681 218 101 57 chr1 67897713 67897922 -129297510 - ORR1B2 LTR MaLR -149 218 1 5 1103 250 316 68 8 chr1 67897931 67898049 -129297383 - MER94 DNA AcHobo -9 125 1 5 1103 1076 262 14 57 chr1 67899003 67899428 -129296004 + Lx7 LINE L1 7290 7696 0 5 1103 207 100 0 0 chr1 67900582 67900612 -129294820 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 5 1103 21 0 0 0 chr1 67900712 67900733 -129294699 + AT_rich Low_complexity Low_complexity 1 21 0 5 1103 961 112 5 32 chr1 67901164 67901349 -129294083 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1103 215 254 0 35 chr1 67901349 67901406 -129294026 + GA-rich Low_complexity Low_complexity 6 60 0 5 1103 349 261 19 44 chr1 67902031 67902159 -129293273 + RLTR16 LTR ERVK 23 193 -341 5 1103 528 45 0 0 chr1 67902159 67902226 -129293206 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1103 232 284 41 76 chr1 67902226 67902242 -129293190 + RLTR16 LTR ERVK 194 210 -324 5 1103 1083 190 18 13 chr1 67903082 67903306 -129292126 + URR1A DNA MER1_type 2 226 0 5 1103 2062 152 25 20 chr1 67903507 67903863 -129291569 - ORR1B2 LTR MaLR -9 358 1 5 1103 1663 198 14 123 chr1 67904366 67904780 -129290652 - ORR1D1 LTR MaLR 0 374 6 5 1103 1121 74 0 26 chr1 67906445 67906597 -129288835 + B1_Mus1 SINE Alu 1 148 0 5 1103 1437 28 11 0 chr1 67906878 67907056 -129288376 + L1Md_F2 LINE L1 6400 6579 -3 5 1103 22 0 0 0 chr1 67907071 67907093 -129288339 + AT_rich Low_complexity Low_complexity 1 22 0 5 1103 616 290 0 0 chr1 67908238 67908393 -129287039 + B3 SINE B2 1 155 -61 5 1103 2848 168 26 2 chr1 67908639 67908696 -129286736 - Lx4A LINE L1 0 7058 7001 5 1103 458 17 17 0 chr1 67908696 67908755 -129286677 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1103 2848 168 26 2 chr1 67908755 67909197 -129286235 - Lx4A LINE L1 -58 7000 6548 5 1103 298 272 25 0 chr1 67909326 67909407 -129286025 + CT-rich Low_complexity Low_complexity 3 85 0 5 1103 380 248 115 8 chr1 67909527 67909657 -129285775 - B1F SINE Alu 0 149 6 5 1103 367 320 8 39 chr1 67910900 67911027 -129284405 - B4 SINE B4 -88 204 82 5 1103 459 0 0 0 chr1 67911050 67911101 -129284331 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1103 261 75 0 0 chr1 67911213 67911253 -129284179 + (TTTC)n Simple_repeat Simple_repeat 4 43 0 5 1103 7147 168 27 94 chr1 67911253 67913082 -129282350 - Lx2B LINE L1 0 7000 5292 5 1103 1305 108 0 0 chr1 67913293 67913639 -129281793 + (CA)n Simple_repeat Simple_repeat 1 346 0 5 1103 238 253 149 32 chr1 67915643 67915737 -129279695 + B2_Mm2 SINE B2 3 107 -109 5 1103 864 245 71 10 chr1 67915770 67915968 -129279464 + B3 SINE B2 6 215 -1 5 1103 2814 120 2 45 chr1 67917038 67917397 -129278035 - L1_Mm LINE L1 -163 5720 5370 5 1103 1081 81 0 0 chr1 67917397 67917533 -129277899 + B1_Mus2 SINE Alu 2 137 -10 5 1103 405 0 0 0 chr1 67917533 67917578 -129277854 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 1103 2814 120 2 45 chr1 67917578 67917661 -129277771 - L1_Mm LINE L1 -514 5369 5297 5 1103 6234 99 20 8 chr1 67917661 67918551 -129276881 + L1_Mus3 LINE L1 5738 6638 0 6 1103 217 272 85 12 chr1 67920892 67920974 -129274458 + B1F2 SINE Alu 33 120 -29 6 1103 204 226 0 0 chr1 67920974 67921036 -129274396 + A-rich Low_complexity Low_complexity 1 62 0 6 1103 189 326 32 43 chr1 67922077 67922170 -129273262 + L2 LINE L2 412 503 -2916 6 1103 21 0 0 0 chr1 67922575 67922596 -129272836 + AT_rich Low_complexity Low_complexity 1 21 0 6 1103 265 248 72 75 chr1 67923691 67923866 -129271566 + L1MEc LINE L1 1664 1895 -4444 6 1103 22 0 0 0 chr1 67924116 67924138 -129271294 + AT_rich Low_complexity Low_complexity 1 22 0 6 1103 346 323 47 0 chr1 67924270 67924397 -129271035 + MER34A1 LTR ERV1 1 133 -454 6 1103 4495 63 33 0 chr1 67924450 67925191 -129270241 - L1Md_F2 LINE L1 -532 6050 5292 6 1103 2893 101 27 20 chr1 67925189 67925632 -129269800 - L1_Mus3 LINE L1 -30 6608 6163 6 1103 3903 62 27 2 chr1 67925634 67926147 -129269285 + L1_Mus3 LINE L1 5633 6158 -480 6 1103 260 304 200 24 chr1 67926152 67926317 -129269115 + MER34A1 LTR ERV1 134 327 -260 6 1103 976 128 23 0 chr1 67926329 67926501 -129268931 + CT-rich Low_complexity Low_complexity 3 178 0 6 1103 240 35 0 0 chr1 67926521 67926550 -129268882 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1103 748 165 0 38 chr1 67926550 67926676 -129268756 - B1_Mur4 SINE Alu -9 141 20 6 1103 256 280 39 29 chr1 67926675 67926778 -129268654 + MER34A1 LTR ERV1 347 450 -137 6 1103 1391 318 118 15 chr1 67926778 67927491 -129267941 + Lx8 LINE L1 6683 7468 -5 6 1103 796 98 8 8 chr1 67927619 67927753 -129267679 + (GA)n Simple_repeat Simple_repeat 1 134 0 6 1103 634 282 52 49 chr1 67928793 67929121 -129266311 + L1MA7 LINE L1 5957 6285 -6 6 1103 26 50 0 0 chr1 67929127 67929167 -129266265 + AT_rich Low_complexity Low_complexity 1 40 0 6 1103 773 124 8 0 chr1 67929555 67929684 -129265748 + (TG)n Simple_repeat Simple_repeat 2 131 0 6 1103 35553 73 0 14 chr1 67930119 67936282 -129259150 - L1Md_F2 LINE L1 0 6582 511 6 1103 539 322 101 67 chr1 67936297 67936372 -129259060 - MLT1D LTR MaLR -57 448 371 6 1103 3253 206 24 29 chr1 67936372 67937096 -129258336 - RMER6D LTR ERVK 0 720 1 6 1103 539 322 101 67 chr1 67937096 67937165 -129258267 - MLT1D LTR MaLR -135 370 309 6 1103 1043 205 4 30 chr1 67937165 67937396 -129258036 + URR1A DNA MER1_type 2 226 0 6 1103 539 322 101 67 chr1 67937396 67937566 -129257866 - MLT1D LTR MaLR -197 308 122 6 1103 396 0 0 0 chr1 67939740 67939784 -129255648 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1103 217 51 0 49 chr1 67940883 67940924 -129254508 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1103 3154 187 11 7 chr1 67941496 67942062 -129253370 + RLTR20D LTR ERVK 1 568 0 6 1103 512 130 0 11 chr1 67942367 67942460 -129252972 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1103 285 210 0 0 chr1 67942495 67942557 -129252875 + GA-rich Low_complexity Low_complexity 2 63 0 6 1103 242 116 0 23 chr1 67943959 67944003 -129251429 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 6 1103 444 77 0 0 chr1 67945421 67945486 -129249946 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1103 507 288 8 0 chr1 67945491 67945609 -129249823 - RSINE1 SINE B4 -42 123 5 6 1103 270 303 105 62 chr1 67945742 67945999 -129249433 + LTR78 LTR ERV1 996 1263 -41 6 1103 1019 126 0 0 chr1 67946301 67946444 -129248988 + B1_Mus1 SINE Alu 5 147 -1 6 1103 258 129 48 0 chr1 67946758 67946820 -129248612 + CT-rich Low_complexity Low_complexity 3 67 0 6 1103 293 292 90 84 chr1 67946820 67946850 -129248582 - ID_B1 SINE B4 -46 246 188 6 1103 495 258 145 0 chr1 67946850 67946974 -129248458 - B1_Mur2 SINE Alu -7 142 1 6 1103 293 292 90 84 chr1 67946974 67947059 -129248373 - ID_B1 SINE B4 -46 187 13 6 1103 1099 208 35 0 chr1 67947022 67947223 -129248209 - MTC LTR MaLR -160 261 54 6 1103 402 119 0 0 chr1 67947223 67947282 -129248150 + ORR1A2 LTR MaLR 1 59 -268 6 1103 4662 94 21 8 chr1 67947282 67947999 -129247433 - L1_Mm LINE L1 -836 5047 4322 6 1103 3555 53 2 0 chr1 67947999 67948435 -129246997 + L1_Mus1 LINE L1 6130 6566 -1 6 1103 1996 108 17 10 chr1 67948441 67948740 -129246692 + ORR1A2 LTR MaLR 27 327 0 6 1103 402 105 0 0 chr1 67948741 67948798 -129246634 - MTC LTR MaLR -364 57 1 6 1103 233 349 37 37 chr1 67948806 67948940 -129246492 - MLT1H LTR MaLR -413 136 3 6 1103 1988 133 56 85 chr1 67949778 67950188 -129245244 + RMER10B LTR ERVL 1 398 0 6 1103 609 295 36 57 chr1 67950361 67950555 -129244877 + B3A SINE B2 4 193 -5 6 1103 1331 169 135 0 chr1 67950556 67950904 -129244528 + L1_Mur3 LINE L1 869 1263 -6465 6 1103 5142 175 37 11 chr1 67951208 67952345 -129243087 + L1_Mur3 LINE L1 3434 4599 -1281 6 1103 6097 47 1 0 chr1 67952366 67953146 -129242286 + L1_Mm LINE L1 5060 5840 -43 6 1103 2589 56 225 0 chr1 67953146 67953502 -129241930 + RLTR10C LTR ERVK 1 436 0 6 1103 2565 108 31 3 chr1 67953502 67953890 -129241542 + MMERVK10C-int LTR ERVK 1 399 -7182 6 1103 39267 47 1 1 chr1 67953888 67958830 -129236602 + MMERVK10C-int LTR ERVK 870 5810 -1771 6 1103 821 99 11 174 chr1 67958816 67959000 -129236432 + MMERVK10C-int LTR ERVK 6646 6799 -782 6 1103 5284 62 11 19 chr1 67959004 67959748 -129235684 + L1Md_F2 LINE L1 5839 6576 -6 6 1103 919 181 6 0 chr1 67959975 67960152 -129235280 - Lx2 LINE L1 -5 6992 6815 6 1103 767 165 6 0 chr1 67960834 67961010 -129234422 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1103 1441 64 0 11 chr1 67961174 67961363 -129234069 - B2_Mm2 SINE B2 -8 187 1 6 1103 803 193 96 6 chr1 67962161 67962338 -129233094 - L1_Mur3 LINE L1 -103 5777 5585 6 1103 180 0 0 0 chr1 67962338 67962358 -129233074 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1103 415 143 102 8 chr1 67962500 67962627 -129232805 - Lx9 LINE L1 -1 7643 7505 6 1103 21468 62 8 5 chr1 67962613 67966303 -129229129 - L1Md_F2 LINE L1 -1 6581 2881 6 1103 6229 81 6 3 chr1 67966297 67967213 -129228219 - L1Md_F2 LINE L1 -4525 1358 395 6 1103 257 247 65 0 chr1 67967230 67967323 -129228109 + L1M5 LINE L1 5727 5825 -299 6 1103 1192 248 134 24 chr1 67967922 67968044 -129227388 + MTC LTR MaLR 5 128 -293 6 1103 567 29 0 0 chr1 67968044 67968113 -129227319 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1103 1192 248 134 24 chr1 67968113 67968362 -129227070 + MTC LTR MaLR 129 416 -5 6 1103 2603 253 104 73 chr1 67968362 67968468 -129226964 + Lx5 LINE L1 5921 6029 -1021 6 1103 441 0 0 0 chr1 67968468 67968517 -129226915 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1103 2603 253 104 73 chr1 67968517 67969501 -129225931 + Lx5 LINE L1 6030 7043 -7 6 1103 225 0 0 0 chr1 67969505 67969530 -129225902 + (TAA)n Simple_repeat Simple_repeat 1 25 0 6 1103 713 271 68 41 chr1 67970354 67970723 -129224709 + Charlie5 DNA MER1_type 2244 2622 -2 6 1103 257 336 45 52 chr1 67970859 67971013 -129224419 + Charlie8 DNA MER1_type 107 259 -2169 6 1103 266 82 41 0 chr1 67971013 67971062 -129224370 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 6 1103 243 0 0 0 chr1 67971839 67971866 -129223566 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1103 552 333 6 16 chr1 67972043 67972226 -129223206 + MTE2b LTR MaLR 59 239 -140 6 1103 453 250 58 8 chr1 67972688 67972809 -129222623 + MTE2b LTR MaLR 253 379 0 6 1103 452 303 123 59 chr1 67973623 67973883 -129221549 - MER34A1 LTR ERV1 -314 273 1 6 1103 573 218 64 50 chr1 67974346 67974486 -129220946 + B1_Mur1 SINE Alu 8 149 0 6 1103 234 337 108 10 chr1 67974517 67974619 -129220813 + B4A SINE B4 31 142 -150 6 1103 366 246 0 0 chr1 67974733 67974863 -129220569 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 1103 186 71 0 0 chr1 67976470 67976498 -129218934 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1103 2050 108 42 60 chr1 67976882 67977217 -129218215 - ORR1A4 LTR MaLR 0 329 1 6 1103 227 140 52 17 chr1 67977369 67977427 -129218005 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 6 1103 3343 163 48 24 chr1 67978030 67978704 -129216728 - RMER6C LTR ERVK 0 690 1 6 1103 3867 60 85 6 chr1 67980335 67980854 -129214578 - LTRIS2 LTR ERV1 0 564 5 6 1103 2084 176 3 8 chr1 67981512 67981873 -129213559 - ORR1B2 LTR MaLR -8 359 1 6 1103 242 240 71 20 chr1 67982509 67982607 -129212825 + RLTR12B LTR ERVK 47 149 -379 6 1103 402 21 0 0 chr1 67982618 67982665 -129212767 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 6 1103 1143 89 0 0 chr1 67982670 67982816 -129212616 - B1_Mus2 SINE Alu 0 147 2 6 1103 292 269 19 12 chr1 67983788 67983799 -129211633 - Lx9 LINE L1 -1 7643 7633 6 1103 1036 51 7 0 chr1 67983799 67983937 -129211495 - L1_Mus1 LINE L1 0 6567 6429 6 1103 292 269 19 12 chr1 67983937 67984087 -129211345 - Lx9 LINE L1 -12 7632 7481 6 1103 459 0 0 0 chr1 67984124 67984175 -129211257 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1103 293 277 15 0 chr1 67984219 67984284 -129211148 - ID4_ SINE ID -3 80 15 6 1103 47 19 0 0 chr1 67984326 67984380 -129211052 + AT_rich Low_complexity Low_complexity 1 54 0 6 1103 1468 158 136 101 chr1 67984996 67985363 -129210069 + MT2A LTR ERVL 1 380 -153 6 1103 379 348 81 16 chr1 67985410 67985658 -129209774 - L1MB7 LINE L1 -162 6022 5759 6 1103 566 213 9 9 chr1 67985672 67985781 -129209651 - B1_Mur2 SINE Alu -1 148 40 6 1103 184 300 16 48 chr1 67987121 67987184 -129208248 + MIR SINE MIR 87 147 -61 6 1103 4631 217 42 29 chr1 67987324 67988447 -129206985 - Lx5 LINE L1 0 7050 5914 6 1103 708 346 29 11 chr1 67988720 67988992 -129206440 + B4A SINE B4 14 290 -2 6 1103 24 0 0 0 chr1 67989177 67989201 -129206231 + AT_rich Low_complexity Low_complexity 1 24 0 6 1103 672 289 42 11 chr1 67989279 67989468 -129205964 - B3A SINE B2 0 198 4 6 1103 671 188 50 21 chr1 67989699 67989840 -129205592 + B1_Mur1 SINE Alu 2 146 -3 6 1103 4665 210 48 12 chr1 67990523 67991587 -129203845 - Lx5 LINE L1 0 7050 5949 6 1103 8024 146 33 12 chr1 67991589 67993203 -129202229 + Lx5 LINE L1 4303 5951 -1099 6 1103 755 133 30 0 chr1 67993200 67993335 -129202097 + Lx5 LINE L1 5822 5960 -1090 6 1103 772 232 85 30 chr1 67994000 67994200 -129201232 + B3 SINE B2 4 214 -2 6 1103 488 112 20 0 chr1 67994286 67994384 -129201048 + (TCTCTG)n Simple_repeat Simple_repeat 2 101 0 6 1103 274 342 40 0 chr1 67994788 67994864 -129200568 + ID4_ SINE ID 3 81 -2 6 1103 571 306 131 35 chr1 67995090 67995164 -129200268 - BLACKJACK DNA AcHobo -138 2806 2744 6 1103 4115 66 4 11 chr1 67995164 67995703 -129199729 - L1Md_F2 LINE L1 -13 6569 6035 6 1103 571 306 131 35 chr1 67995703 67996201 -129199231 - BLACKJACK DNA AcHobo -201 2743 2179 6 1103 228 254 51 96 chr1 67996225 67996382 -129199050 - BLACKJACK DNA AcHobo -855 2089 1940 6 1103 6276 177 62 6 chr1 67996863 67999122 -129196310 - Lx5 LINE L1 0 7050 4641 6 1103 295 222 669 21 chr1 67999150 67999290 -129196142 + B4A SINE B4 3 233 -59 7 1103 270 0 0 0 chr1 67999366 67999396 -129196036 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1103 321 26 0 0 chr1 67999396 67999433 -129195999 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1103 256 309 110 20 chr1 67999460 67999594 -129195838 + MLT1A LTR MaLR 1 147 -261 7 1103 265 319 0 55 chr1 67999610 67999683 -129195749 + PB1D10 SINE Alu 12 80 -37 7 1103 333 330 0 21 chr1 68000334 68000427 -129195005 + PB1D10 SINE Alu 6 96 -21 1 1103 405 54 0 0 chr1 68001140 68001196 -129194236 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1103 222 278 19 0 chr1 68001899 68001953 -129193479 - B1_Mus1 SINE Alu -88 60 6 3 1103 233 262 71 12 chr1 68002188 68002273 -129193159 + ORR1D2 LTR MaLR 1 90 -284 4 1103 246 309 51 98 chr1 68002347 68002602 -129192830 + ORR1D2 LTR MaLR 88 330 -40 4 1103 482 181 430 0 chr1 68003104 68003253 -129192179 + B3 SINE B2 1 213 -3 5 1103 382 284 20 34 chr1 68003632 68003778 -129191654 - B1_Mur2 SINE Alu -4 145 2 6 1103 790 204 110 32 chr1 68003979 68004197 -129191235 - MLT1D LTR MaLR 0 505 271 7 1103 702 232 22 0 chr1 68004286 68004424 -129191008 + B1_Mur2 SINE Alu 1 141 -8 8 1103 364 241 76 0 chr1 68004460 68004539 -129190893 + ID_B1 SINE B4 125 209 -15 9 1103 309 305 53 21 chr1 68004567 68004727 -129190705 - MLT1D LTR MaLR -326 179 1 7 1103 211 341 0 0 chr1 68004864 68004946 -129190486 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 1 1103 444 37 0 0 chr1 68004947 68005001 -129190431 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1103 396 0 0 0 chr1 68005332 68005376 -129190056 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1103 492 200 36 0 chr1 68005584 68005724 -129189708 + Lx9 LINE L1 7499 7643 -1 1 1103 211 50 75 0 chr1 68006066 68006106 -129189326 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1 1103 1197 140 4 69 chr1 68006129 68006375 -129189057 - Lx LINE L1 -27 6627 6398 1 1103 282 183 0 0 chr1 68007237 68007308 -129188124 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1103 513 0 0 0 chr1 68007308 68007365 -129188067 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1103 381 93 0 0 chr1 68008656 68008710 -129186722 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1103 586 284 26 32 chr1 68008831 68009020 -129186412 - B3 SINE B2 -2 214 27 1 1103 1672 257 56 29 chr1 68009424 68009968 -129185464 + Lx2 LINE L1 57 617 -7111 2 1103 3068 94 9 9 chr1 68009968 68010419 -129185013 - Lx2 LINE L1 0 6997 6547 2 1103 1672 110 0 50297 chr1 68010419 68010537 -129184895 + Lx2 LINE L1 618 624 -7104 2 1103 1360 240 55 36 chr1 68010560 68011031 -129184401 + Lx7 LINE L1 405 884 -6844 2 1103 1458 151 65 0 chr1 68011027 68011318 -129184114 + Lx7 LINE L1 2110 2419 -3461 2 1103 368 189 54 0 chr1 68011352 68011426 -129184006 - B1_Mur3 SINE Alu -13 136 59 2 1103 559 284 81 29 chr1 68011519 68011765 -129183667 - RLTR15 LTR ERVK -100 259 1 2 1103 320 254 45 0 chr1 68011765 68011826 -129183606 - B1_Mur4 SINE Alu -86 64 1 2 1103 8207 160 105 15 chr1 68011826 68013287 -129182145 + Lx7 LINE L1 2406 4018 -1862 2 1103 405 0 0 0 chr1 68013287 68013332 -129182100 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 2 1103 8207 160 105 15 chr1 68013332 68013777 -129181655 + Lx7 LINE L1 4019 4483 -1397 2 1103 3945 91 12 19 chr1 68013784 68014365 -129181067 - RLTR13D1 LTR ERVK -3 803 227 2 1103 2930 150 30 23 chr1 68014338 68014869 -129180563 - RLTR13D1 LTR ERVK -359 543 9 2 1103 6462 208 40 21 chr1 68014878 68017687 -129177745 + Lx7 LINE L1 4511 7367 -329 2 1103 1151 195 45 42 chr1 68017752 68018089 -129177343 + Lx7 LINE L1 7357 7694 -2 2 1103 1894 277 25 9 chr1 68018572 68019096 -129176336 + Lx9 LINE L1 6359 6890 -754 2 1103 1250 111 0 6 chr1 68019626 68019807 -129175625 + B2_Mm2 SINE B2 2 181 -14 2 1103 400 298 72 134 chr1 68019863 68020074 -129175358 - MER67D LTR ERV1 -321 390 157 3 1103 2739 73 50 48 chr1 68020074 68020182 -129175250 - L1_Mus2 LINE L1 -2 6564 6443 3 1103 3535 18 2 0 chr1 68020182 68020577 -129174855 + MTA_Mm LTR MaLR 1 396 0 3 1103 2739 73 50 48 chr1 68020577 68020886 -129174546 - L1_Mus2 LINE L1 -124 6442 6146 3 1103 400 284 15 173 chr1 68020886 68021054 -129174378 - MER67D LTR ERV1 -358 156 11 3 1103 591 62 0 0 chr1 68021641 68021721 -129173711 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 1103 23 0 0 0 chr1 68021777 68021800 -129173632 + AT_rich Low_complexity Low_complexity 1 23 0 3 1103 276 250 44 22 chr1 68021994 68022084 -129173348 - PB1D10 SINE Alu -2 115 24 3 1103 3163 173 48 15 chr1 68022196 68022795 -129172637 - Lx4B LINE L1 -7 7051 6433 3 1103 379 171 0 0 chr1 68022795 68022877 -129172555 - Lx4B LINE L1 -891 6167 6086 3 1103 189 276 103 0 chr1 68023924 68023982 -129171450 - MIRc SINE MIR -177 91 28 3 1103 912 72 0 0 chr1 68024161 68024286 -129171146 + (CA)n Simple_repeat Simple_repeat 1 125 0 3 1103 24 32 0 0 chr1 68024846 68024877 -129170555 + AT_rich Low_complexity Low_complexity 1 31 0 3 1103 441 311 262 41 chr1 68024943 68025385 -129170047 + MLT1F LTR MaLR 1 540 -8 4 1103 291 289 26 0 chr1 68025492 68025568 -129169864 + ID SINE ID 5 82 -142 4 1103 780 11 0 0 chr1 68026110 68026199 -129169233 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 137 4957 74 42 7 chr1 68026365 68027057 -129168375 + L1_Mus3 LINE L1 5917 6632 -6 4 1104 21 71 0 0 chr1 68027193 68027235 -129168197 + AT_rich Low_complexity Low_complexity 1 42 0 4 1104 794 223 99 24 chr1 68027364 68027575 -129167857 + ORR1C2 LTR MaLR 125 351 -33 4 1104 197 128 0 21 chr1 68027592 68027640 -129167792 + (TTTTTG)n Simple_repeat Simple_repeat 4 50 0 4 1104 22 56 0 0 chr1 68029193 68029229 -129166203 + AT_rich Low_complexity Low_complexity 1 36 0 4 1104 343 274 31 21 chr1 68029425 68029520 -129165912 - MER92B LTR ERV1 -417 219 124 4 1104 232 237 39 26 chr1 68029520 68029598 -129165834 - MLT1A LTR MaLR -1 364 286 4 1104 275 292 90 52 chr1 68029683 68029773 -129165659 - MLT1A LTR MaLR -212 162 67 4 1104 1581 137 94 109 chr1 68029773 68030157 -129165275 + ORR1C1 LTR MaLR 1 378 0 5 1104 275 292 90 52 chr1 68030157 68030221 -129165211 - MLT1A LTR MaLR -308 66 2 4 1104 335 333 15 45 chr1 68030221 68030298 -129165134 - MER92B LTR ERV1 -508 128 55 4 1104 183 42 0 0 chr1 68030298 68030322 -129165110 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1104 335 355 0 31 chr1 68030322 68030372 -129165060 - MER92B LTR ERV1 -500 54 5 4 1104 807 302 180 15 chr1 68030527 68030922 -129164510 + RMER5 LTR ERV1 36 495 -39 5 1104 854 198 167 0 chr1 68030993 68031185 -129164247 - URR1A DNA MER1_type 0 226 3 5 1104 1708 244 87 52 chr1 68033138 68033748 -129161684 + RMER1B Other Other 31 661 -405 5 1104 21863 159 12 46 chr1 68034050 68039844 -129155588 - Lx LINE L1 0 6654 1084 5 1104 7336 65 4 2 chr1 68039845 68041061 -129154371 - L1_Mus2 LINE L1 0 6566 5348 5 1104 2480 131 62 5 chr1 68041058 68041479 -129153953 - Lx LINE L1 -5548 1086 642 5 1104 1484 195 81 58 chr1 68041536 68041929 -129153503 + RMER1B Other Other 653 1054 -12 5 1104 291 339 89 47 chr1 68042044 68042254 -129153178 + L4 LINE RTE 1657 1879 -150 5 1104 216 0 0 0 chr1 68042254 68042278 -129153154 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1104 291 339 89 47 chr1 68042278 68042324 -129153108 + L4 LINE RTE 1880 1924 -105 5 1104 295 300 12 12 chr1 68042393 68042474 -129152958 - MLT1D LTR MaLR -80 425 345 5 1104 595 278 33 76 chr1 68042842 68043052 -129152380 - B3A SINE B2 -1 215 15 6 1104 254 256 61 136 chr1 68044749 68044962 -129150470 - RMER15 LTR ERVL -340 235 39 6 1104 475 168 118 0 chr1 68044991 68045110 -129150322 + Lx3C LINE L1 6829 6961 -15 6 1104 180 0 0 0 chr1 68045110 68045130 -129150302 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 1104 563 280 18 48 chr1 68046454 68046619 -129148813 - ID_B1 SINE B4 -45 179 20 6 1104 243 0 0 0 chr1 68047465 68047492 -129147940 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 6 1104 419 218 78 19 chr1 68047781 68047884 -129147548 + PB1D9 SINE Alu 5 113 -7 6 1104 597 147 11 0 chr1 68048001 68048096 -129147336 + B1_Mus1 SINE Alu 10 105 -43 6 1104 729 57 8 0 chr1 68048132 68048254 -129147178 + MusHAL1 LINE L1 2588 2710 -2 6 1104 1484 191 41 186 chr1 68049274 68049373 -129146059 + MTC LTR MaLR 3 87 -334 6 1104 747 191 30 0 chr1 68049373 68049504 -129145928 + B1_Mus1 SINE Alu 1 135 -13 7 1104 1484 191 41 186 chr1 68049504 68049894 -129145538 + MTC LTR MaLR 88 421 0 6 1104 305 75 19 0 chr1 68050022 68050075 -129145357 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1104 574 285 29 10 chr1 68050110 68050319 -129145113 + B3 SINE B2 2 214 -2 7 1104 3663 193 74 53 chr1 68051211 68051526 -129143906 + RLTR25A LTR ERVK 1 308 -795 7 1104 1497 136 274 3 chr1 68051526 68051858 -129143574 + BGLII_Mus LTR ERVK 1 422 0 7 1104 3663 157 180 117 chr1 68051858 68052509 -129142923 + RLTR25A LTR ERVK 307 1028 0 7 1104 850 160 194 16 chr1 68053078 68053269 -129142163 + URR1B DNA MER1_type 1 225 0 7 1104 219 36 0 0 chr1 68053371 68053399 -129142033 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1104 198 349 0 60 chr1 68053804 68053871 -129141561 + MIRb SINE MIR 23 85 -183 7 1104 904 333 79 67 chr1 68054037 68054591 -129140841 - MLT1G3 LTR MaLR -34 561 1 7 1104 234 359 122 26 chr1 68054760 68054949 -129140483 - MIR SINE MIR -52 210 4 7 1104 3332 41 5 0 chr1 68055192 68055586 -129139846 - MTA_Mm LTR MaLR 0 396 1 8 1104 218 280 0 20 chr1 68055779 68055830 -129139602 - L2c LINE L2 -72 3315 3266 8 1104 325 267 90 22 chr1 68056533 68056667 -129138765 - Lx8 LINE L1 -340 7133 6991 8 1104 503 318 86 63 chr1 68056959 68057214 -129138218 + B4A SINE B4 3 263 -29 8 1104 625 200 36 71 chr1 68057864 68058004 -129137428 + B1_Mur2 SINE Alu 15 149 0 8 1104 228 326 0 42 chr1 68058216 68058312 -129137120 - MER34A1 LTR ERV1 -455 132 41 8 1104 225 0 0 0 chr1 68058672 68058697 -129136735 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 8 1104 225 94 0 0 chr1 68058697 68058729 -129136703 + (TTTTC)n Simple_repeat Simple_repeat 1 32 0 8 1104 580 198 149 0 chr1 68058729 68058850 -129136582 - B1_Mur1 SINE Alu 0 149 11 8 1104 33986 87 15 5 chr1 68059207 68065494 -129129938 - L1Md_F2 LINE L1 0 6582 239 8 1104 1011 97 0 0 chr1 68065516 68065661 -129129771 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 9 1104 257 274 66 33 chr1 68065759 68065880 -129129552 - RMER15 LTR ERVL -90 485 361 9 1104 270 302 0 60 chr1 68066289 68066356 -129129076 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 9 1104 1331 295 31 0 chr1 68067069 68067425 -129128007 - MTEb LTR MaLR -12 367 1 9 1104 1200 216 166 18 chr1 68067583 68067909 -129127523 - ORR1D1 LTR MaLR 0 374 1 9 1104 234 0 0 0 chr1 68068036 68068062 -129127370 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 9 1104 1820 224 71 50 chr1 68068582 68069009 -129126423 + RLTR20C LTR ERVK 6 432 -102 9 1104 396 0 0 0 chr1 68069009 68069053 -129126379 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1104 1820 224 71 50 chr1 68069053 68069143 -129126289 + RLTR20C LTR ERVK 433 533 -1 9 1104 4128 31 2 0 chr1 68069795 68070276 -129125156 + LTRIS_Mm LTR ERV1 1 482 0 9 1104 513 278 0 16 chr1 68070276 68070404 -129125028 + ID_B1 SINE B4 96 221 -3 9 1104 279 0 0 0 chr1 68070407 68070438 -129124994 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 1104 941 296 41 43 chr1 68070586 68070933 -129124499 - ORR1D2 LTR MaLR -8 362 12 1 1104 313 360 98 54 chr1 68071327 68071603 -129123829 + MER77 LTR ERVL 282 569 -38 1 1104 1775 202 63 3 chr1 68072679 68073011 -129122421 + MTC LTR MaLR 14 365 -56 1 1104 634 317 7 0 chr1 68073478 68073620 -129121812 + RSINE1 SINE B4 3 145 -20 1 1104 506 298 142 0 chr1 68074215 68074356 -129121076 - RSINE1 SINE B4 -2 163 3 1 1104 2016 154 47 3 chr1 68075050 68075414 -129120018 + ORR1B1 LTR MaLR 1 380 -14 1 1104 990 132 126 5 chr1 68075418 68075608 -129119824 + ORR1B1-int LTR MaLR 1 213 -1296 1 1104 268 352 134 15 chr1 68075849 68076051 -129119381 + MIRb SINE MIR 23 248 -20 1 1104 182 174 22 0 chr1 68076824 68076870 -129118562 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1104 227 54 16 82 chr1 68078330 68078391 -129117041 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1 1104 29 47 0 0 chr1 68078767 68078810 -129116622 + AT_rich Low_complexity Low_complexity 1 43 0 1 1104 23 0 0 0 chr1 68079556 68079579 -129115853 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 625 275 11 96 chr1 68087405 68087582 -129107850 + B3A SINE B2 21 182 -16 1 1104 549 64 44 26 chr1 68087672 68087785 -129107647 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 1 1104 239 155 0 27 chr1 68088143 68088177 -129107255 + A-rich Low_complexity Low_complexity 6 39 0 1 1104 1030 104 14 0 chr1 68088177 68088321 -129107111 + B1_Mm SINE Alu 2 147 0 1 1104 275 49 0 24 chr1 68088326 68088368 -129107064 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1104 239 155 0 27 chr1 68088368 68088400 -129107032 + A-rich Low_complexity Low_complexity 45 75 0 1 1104 271 211 0 95 chr1 68089534 68089597 -129105835 - B4A SINE B4 -14 278 222 1 1104 498 157 0 0 chr1 68089592 68089675 -129105757 - URR1B DNA MER1_type -32 193 111 1 1104 548 241 26 0 chr1 68089732 68089848 -129105584 - B4A SINE B4 -61 231 113 1 1104 21 36 0 0 chr1 68089908 68089936 -129105496 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 23 0 0 0 chr1 68091017 68091040 -129104392 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 311 284 26 8 chr1 68091823 68091940 -129103492 - L1MA4 LINE L1 -406 5894 5776 1 1104 252 185 0 0 chr1 68091942 68091996 -129103436 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1 1104 185 374 0 67 chr1 68092575 68092664 -129102768 - L2a LINE L2 -8 3418 3336 1 1104 669 25 0 0 chr1 68092909 68092988 -129102444 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1104 213 209 60 0 chr1 68094750 68094817 -129100615 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1 1104 25 65 0 0 chr1 68094879 68094925 -129100507 + AT_rich Low_complexity Low_complexity 1 46 0 1 1104 21 0 0 0 chr1 68095610 68095631 -129099801 + AT_rich Low_complexity Low_complexity 1 21 0 1 1104 338 117 33 0 chr1 68095678 68095738 -129099694 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1 1104 345 100 0 0 chr1 68096108 68096158 -129099274 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1104 666 0 0 0 chr1 68096818 68096892 -129098540 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1104 396 103 0 0 chr1 68098645 68098703 -129096729 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1104 785 309 116 47 chr1 68098703 68099022 -129096410 + MTE2a LTR MaLR 39 379 0 1 1104 1642 188 100 0 chr1 68099216 68099556 -129095876 + ORR1D1 LTR MaLR 1 374 0 1 1104 629 345 40 33 chr1 68100657 68100960 -129094472 - Lx8 LINE L1 -93 7380 7076 1 1104 483 63 0 0 chr1 68100978 68101041 -129094391 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 1104 728 59 52 0 chr1 68101654 68101790 -129093642 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 1 1104 454 329 27 27 chr1 68102187 68102334 -129093098 - B1F SINE Alu -2 147 1 1 1104 490 258 81 101 chr1 68103402 68103600 -129091832 - B3A SINE B2 0 198 5 1 1104 23 0 0 0 chr1 68104544 68104567 -129090865 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 334 327 0 55 chr1 68106434 68106544 -129088888 + B3 SINE B2 2 105 -111 1 1104 1317 178 29 12 chr1 68106553 68106867 -129088565 + ORR1B2 LTR MaLR 9 378 0 1 1104 496 223 44 9 chr1 68106867 68106978 -129088454 + B3 SINE B2 102 216 0 1 1104 1527 161 56 102 chr1 68110530 68110960 -129084472 + RMER17C LTR ERVK 1 410 0 1 1104 260 244 0 37 chr1 68111273 68111354 -129084078 + GA-rich Low_complexity Low_complexity 1 78 0 1 1104 249 254 15 15 chr1 68111481 68111549 -129083883 + ID2 SINE ID 5 72 -11 1 1104 278 197 0 27 chr1 68111556 68111629 -129083803 + GA-rich Low_complexity Low_complexity 2 72 0 1 1104 638 301 38 24 chr1 68112990 68113201 -129082231 - B3 SINE B2 -1 215 2 1 1104 454 319 12 25 chr1 68113611 68113772 -129081660 - RSINE1 SINE B4 -4 161 3 1 1104 432 97 0 0 chr1 68114098 68114160 -129081272 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1104 483 324 111 46 chr1 68114426 68114688 -129080744 + B4A SINE B4 2 280 -12 1 1104 450 0 0 0 chr1 68114696 68114746 -129080686 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1104 228 149 0 0 chr1 68115280 68115327 -129080105 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1104 667 203 49 0 chr1 68115329 68115472 -129079960 - B1_Mus1 SINE Alu 0 150 1 1 1104 195 69 0 0 chr1 68115549 68115578 -129079854 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1104 540 217 41 27 chr1 68115698 68115845 -129079587 - B1F SINE Alu 0 149 1 1 1104 271 350 49 0 chr1 68116017 68116175 -129079257 + MIR SINE MIR 14 175 -87 1 1104 368 260 78 24 chr1 68116773 68116809 -129078623 - Lx6 LINE L1 -1565 5895 5861 1 1104 1080 119 0 0 chr1 68116809 68116977 -129078455 + (TTCC)n Simple_repeat Simple_repeat 2 169 0 1 1104 368 260 78 24 chr1 68116977 68117145 -129078287 - Lx6 LINE L1 -1600 5860 5681 1 1104 24 0 0 0 chr1 68117255 68117279 -129078153 + AT_rich Low_complexity Low_complexity 1 24 0 1 1104 375 327 83 45 chr1 68117285 68117442 -129077990 - B3A SINE B2 -5 193 31 1 1104 23 0 0 0 chr1 68119038 68119061 -129076371 + AT_rich Low_complexity Low_complexity 1 23 0 1 1104 255 241 5 28 chr1 68119476 68119558 -129075874 - L1MA5 LINE L1 -373 5927 5851 1 1104 213 39 0 0 chr1 68119842 68119868 -129075564 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1104 933 268 11 0 chr1 68119969 68120159 -129075273 - B3A SINE B2 -1 197 6 1 1104 211 211 0 0 chr1 68122839 68122877 -129072555 + A-rich Low_complexity Low_complexity 1 38 0 1 1104 252 0 0 0 chr1 68123123 68123151 -129072281 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1104 282 160 0 0 chr1 68123397 68123447 -129071985 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 1104 627 257 13 57 chr1 68123588 68123745 -129071687 - RSINE1 SINE B4 -3 162 13 1 1104 4330 39 0 0 chr1 68124109 68124626 -129070806 - L1Md_T LINE L1 0 6582 6066 1 1104 324 0 0 0 chr1 68124789 68124825 -129070607 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1104 28 29 0 0 chr1 68125186 68125221 -129070211 + AT_rich Low_complexity Low_complexity 1 35 0 1 1104 484 351 14 38 chr1 68125652 68125865 -129069567 + MamSINE1 SINE tRNA 80 287 -3 1 1104 21 36 0 0 chr1 68126369 68126397 -129069035 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 219 69 0 0 chr1 68127482 68127511 -129067921 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1104 21 0 0 0 chr1 68128007 68128028 -129067404 + AT_rich Low_complexity Low_complexity 1 21 0 1 1104 491 293 131 16 chr1 68129617 68129808 -129065624 - B3 SINE B2 -1 215 3 1 1104 486 0 0 0 chr1 68129829 68129883 -129065549 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1104 748 280 33 6 chr1 68130092 68130275 -129065157 - B3A SINE B2 -9 189 2 1 1104 198 0 0 0 chr1 68130415 68130437 -129064995 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1104 206 306 71 10 chr1 68131530 68131629 -129063803 + MIRb SINE MIR 58 162 -106 1 1104 208 311 16 16 chr1 68131763 68131825 -129063607 + MIRb SINE MIR 167 228 -40 1 1104 2344 218 28 11 chr1 68132448 68132908 -129062524 + Lx5 LINE L1 6580 7047 -3 1 1104 334 82 0 56 chr1 68133594 68133684 -129061748 + (TTTTG)n Simple_repeat Simple_repeat 1 85 0 1 1104 548 344 48 48 chr1 68134009 68134342 -129061090 + RLTR12B LTR ERVK 1 333 -195 1 1104 698 246 0 0 chr1 68134841 68134983 -129060449 + B1_Mur2 SINE Alu 3 144 -5 1 1104 215 226 0 16 chr1 68134997 68135060 -129060372 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 1 1104 219 88 0 0 chr1 68135083 68135117 -129060315 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1104 745 336 154 13 chr1 68135126 68135521 -129059911 - Lx8 LINE L1 -158 7315 6865 1 1104 295 333 17 26 chr1 68135675 68135792 -129059640 - PB1D10 SINE Alu 0 117 2 1 1104 968 225 34 0 chr1 68136955 68137164 -129058268 - B3 SINE B2 0 216 1 1 1104 279 0 0 0 chr1 68138731 68138762 -129056670 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1104 1842 186 23 49 chr1 68138787 68139101 -129056331 + ORR1C2 LTR MaLR 6 318 -66 1 1104 1301 13 0 6 chr1 68139101 68139257 -129056175 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1 1104 1131 50 0 21 chr1 68139259 68139403 -129056029 - B1_Mm SINE Alu -6 141 1 1 1104 1842 186 23 49 chr1 68139403 68139474 -129055958 + ORR1C2 LTR MaLR 319 384 0 1 1104 499 289 92 42 chr1 68140340 68140578 -129054854 + MIR SINE MIR 13 262 0 1 1104 348 316 29 76 chr1 68141514 68141685 -129053747 + MLT1A1 LTR MaLR 246 408 0 1 1104 1018 279 35 86 chr1 68143256 68143652 -129051780 + MTD LTR MaLR 42 417 -2 1 1104 500 0 17 0 chr1 68145158 68145218 -129050214 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1104 513 206 68 126 chr1 68145591 68145797 -129049635 + B2_Mm2 SINE B2 1 194 -1 1 1104 1153 55 0 7 chr1 68146015 68146152 -129049280 + B1_Mm SINE Alu 1 137 -10 2 1104 648 38 0 0 chr1 68146152 68146231 -129049201 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1104 1011 94 0 0 chr1 68146652 68146790 -129048642 + B1_Mus1 SINE Alu 1 138 -10 2 1104 203 0 0 36 chr1 68146790 68146818 -129048614 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1104 2788 61 37 13 chr1 68147178 68147558 -129047874 + L1_Mus2 LINE L1 6178 6566 0 2 1104 201 250 0 0 chr1 68148207 68148251 -129047181 - MIRm SINE MIR -4 272 229 2 1104 378 281 108 8 chr1 68148322 68148451 -129046981 - MIR SINE MIR -80 182 41 2 1104 209 278 49 49 chr1 68149050 68149152 -129046280 + L2a LINE L2 3209 3310 -116 2 1104 1394 279 119 12 chr1 68149322 68149735 -129045697 + Lx5 LINE L1 6589 7045 -5 2 1104 362 346 10 0 chr1 68150035 68150136 -129045296 - PB1D10 SINE Alu -10 107 6 2 1104 21 36 0 0 chr1 68150205 68150233 -129045199 + AT_rich Low_complexity Low_complexity 1 28 0 2 1104 1158 112 0 0 chr1 68151801 68151979 -129043453 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 1104 490 76 25 12 chr1 68151979 68152059 -129043373 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 2 1104 190 325 39 55 chr1 68153225 68153352 -129042080 + L3 LINE CR1 2765 2889 -1600 2 1104 249 297 0 15 chr1 68153984 68154049 -129041383 + B1F2 SINE Alu 1 64 -85 2 1104 232 397 0 13 chr1 68154049 68154060 -129041372 + B4A SINE B4 86 160 -132 2 1104 280 337 51 31 chr1 68155616 68155714 -129039718 + LTR16D LTR ERVL 552 651 0 2 1104 1007 60 0 0 chr1 68156001 68156134 -129039298 - L1_Mus1 LINE L1 0 6567 6435 2 1104 513 0 0 0 chr1 68156357 68156414 -129039018 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1104 474 18 0 0 chr1 68156419 68156474 -129038958 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1104 22 0 0 0 chr1 68156719 68156741 -129038691 + AT_rich Low_complexity Low_complexity 1 22 0 2 1104 881 244 14 37 chr1 68156757 68156974 -129038458 + B3 SINE B2 2 213 -3 2 1104 323 181 82 14 chr1 68157273 68157346 -129038086 - HAL1-3A_ME LINE L1 -807 2051 1974 2 17 451 311 98 79 chr1 68157375 68157640 -129037792 - B4 SINE B4 -18 274 5 2 1105 326 335 17 89 chr1 68158054 68158234 -129037198 + Lx7 LINE L1 6969 7135 -561 2 1105 6672 70 1 0 chr1 68158534 68159369 -129036063 + L1_Mm LINE L1 4752 5586 -297 2 1105 7966 50 5 2 chr1 68159369 68160350 -129035082 + L1Md_F2 LINE L1 5587 6570 -12 2 1105 6672 70 1 0 chr1 68160350 68160370 -129035062 + L1_Mm LINE L1 5587 5607 -276 2 1105 968 128 171 0 chr1 68160499 68160686 -129034746 + URR1B DNA MER1_type 1 219 -6 2 1105 221 352 98 0 chr1 68161193 68161315 -129034117 - MER5A DNA MER1_type 0 189 56 2 1105 847 289 84 0 chr1 68161403 68161687 -129033745 + MTEa LTR MaLR 69 376 -3 2 1105 459 340 175 4 chr1 68162423 68162686 -129032746 + MLT1H2 LTR MaLR 100 407 -82 2 1105 264 59 0 0 chr1 68162693 68162727 -129032705 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1105 678 285 35 17 chr1 68163862 68164094 -129031338 + Lx7 LINE L1 6998 7233 -463 2 1105 204 111 0 0 chr1 68164188 68164224 -129031208 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1105 405 0 0 0 chr1 68164375 68164420 -129031012 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1105 1469 332 72 14 chr1 68165003 68165840 -129029592 - Lx9 LINE L1 -317 7327 6281 2 1105 352 184 19 0 chr1 68165851 68165954 -129029478 + CT-rich Low_complexity Low_complexity 2 106 0 2 1105 724 128 0 90 chr1 68167700 68167855 -129027577 + Lx2B LINE L1 6857 6997 -3 2 1105 34 24 0 0 chr1 68168160 68168201 -129027231 + AT_rich Low_complexity Low_complexity 1 41 0 2 1105 232 325 28 3 chr1 68168611 68168699 -129026733 - ID4_ SINE ID -51 101 13 2 1105 27 49 0 0 chr1 68168836 68168877 -129026555 + AT_rich Low_complexity Low_complexity 1 41 0 2 1105 182 156 22 0 chr1 68169000 68169045 -129026387 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1105 222 301 130 49 chr1 68169073 68169258 -129026174 - MIR SINE MIR -32 230 31 2 1105 197 331 109 29 chr1 68169211 68169348 -129026084 - L2c LINE L2 -145 3242 3095 2 1105 547 322 7 27 chr1 68169568 68169715 -129025717 - RSINE1 SINE B4 -18 147 4 2 1105 198 321 100 9 chr1 68169716 68169826 -129025606 - L2c LINE L2 -598 2821 2702 2 1105 208 179 29 29 chr1 68169898 68169967 -129025465 + (TAA)n Simple_repeat Simple_repeat 1 69 0 2 1105 848 327 60 62 chr1 68170018 68170504 -129024928 + MLT1D LTR MaLR 21 505 0 2 1105 508 351 66 47 chr1 68170519 68170839 -129024593 - LTR68 LTR ERV1 -16 724 399 2 1105 241 293 105 130 chr1 68171234 68171595 -129023837 - ORR1E LTR MaLR 0 359 8 2 1105 185 421 15 15 chr1 68171685 68171820 -129023612 - MIRb SINE MIR -107 161 27 2 1105 516 16 0 0 chr1 68172049 68172110 -129023322 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1105 1215 62 0 0 chr1 68172772 68172918 -129022514 + B1_Mus1 SINE Alu 2 147 -1 2 1105 2307 60 15 180 chr1 68173066 68173533 -129021899 + RLTR10 LTR ERVK 1 390 0 2 1105 21 89 0 0 chr1 68173718 68173774 -129021658 + AT_rich Low_complexity Low_complexity 1 56 0 2 1105 411 337 47 38 chr1 68173864 68174311 -129021121 + L1_Mur3 LINE L1 4464 4914 -966 2 1105 18584 17 0 0 chr1 68174358 68176507 -129018925 + L1Md_T LINE L1 3438 5586 -297 2 1105 8425 29 3 0 chr1 68176507 68177500 -129017932 + L1Md_T LINE L1 5587 6582 0 2 1105 342 0 0 0 chr1 68178251 68178289 -129017143 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1105 433 321 27 0 chr1 68178432 68178653 -129016779 + L1_Mur3 LINE L1 5231 5457 -423 2 1105 224 77 26 0 chr1 68178730 68178769 -129016663 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2 1105 244 268 80 9 chr1 68178786 68178899 -129016533 + L1M3 LINE L1 5501 5621 -547 2 1105 542 335 70 42 chr1 68179166 68179475 -129015957 + MLT2C2 LTR ERVL 22 336 -61 2 1105 315 282 0 106 chr1 68179499 68179622 -129015810 + PB1D7 SINE Alu 2 111 -9 2 1105 228 260 14 14 chr1 68179678 68179752 -129015680 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 2 1105 3522 79 0 0 chr1 68179787 68180266 -129015166 + MusHAL1 LINE L1 1367 1845 -867 2 1105 215 314 0 0 chr1 68180391 68180461 -129014971 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1105 25 0 0 0 chr1 68181646 68181671 -129013761 + AT_rich Low_complexity Low_complexity 1 25 0 2 1105 182 346 62 0 chr1 68182155 68182236 -129013196 - MER5A DNA MER1_type -7 182 97 2 1105 195 129 0 0 chr1 68183802 68183833 -129011599 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1105 511 58 23 23 chr1 68183833 68183920 -129011512 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 2 1105 306 67 0 0 chr1 68183921 68183966 -129011466 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1105 394 252 30 20 chr1 68184339 68184440 -129010992 + B3 SINE B2 3 104 -112 2 1105 234 105 0 0 chr1 68184500 68184538 -129010894 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2 1105 363 296 133 63 chr1 68185248 68185645 -129009787 + L1MEc LINE L1 365 789 -5611 2 1105 258 289 34 34 chr1 68185900 68186047 -129009385 + L1MEc LINE L1 2475 2621 -3698 2 1105 432 200 0 0 chr1 68186913 68187003 -129008429 + CT-rich Low_complexity Low_complexity 3 92 0 2 1105 1809 40 5 0 chr1 68187051 68187273 -129008159 - L1Md_T LINE L1 0 6582 6360 2 1105 493 288 28 16 chr1 68187273 68187414 -129008018 - ID_B1 SINE B4 -9 215 77 2 1105 299 247 110 0 chr1 68188698 68188771 -129006661 + PB1D10 SINE Alu 1 81 -36 2 1105 359 306 112 5 chr1 68189785 68189972 -129005460 + L2a LINE L2 3211 3417 -9 2 1105 239 361 24 39 chr1 68190646 68190773 -129004659 + MIRb SINE MIR 10 134 -134 2 1105 468 274 95 79 chr1 68190944 68191196 -129004236 + MLT1A1 LTR MaLR 19 290 -75 2 1105 332 41 20 0 chr1 68191691 68191740 -129003692 - L1_Mus2 LINE L1 0 6566 6517 2 1105 216 214 59 12 chr1 68191933 68192103 -129003329 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1105 205 359 18 64 chr1 68192764 68192874 -129002558 + L2 LINE L2 2746 2850 -569 2 1105 205 97 0 0 chr1 68194268 68194299 -129001133 - L2a LINE L2 -9 3417 3387 2 1105 5650 55 4 6 chr1 68195157 68195875 -128999557 - L1Md_F2 LINE L1 -12 6570 5854 2 1105 10647 65 4 4 chr1 68195875 68197256 -128998176 + L1Md_F2 LINE L1 4504 5883 0 2 1105 587 249 91 33 chr1 68197269 68197461 -128997971 - B3A SINE B2 -12 204 1 2 1105 280 381 124 12 chr1 68197801 68198043 -128997389 + MamRep605 Unknown Unknown 412 680 -196 2 1105 25 0 0 0 chr1 68198159 68198184 -128997248 + AT_rich Low_complexity Low_complexity 1 25 0 2 1105 22 56 0 0 chr1 68198475 68198511 -128996921 + AT_rich Low_complexity Low_complexity 1 36 0 2 1105 189 107 0 0 chr1 68198658 68198686 -128996746 + (TATG)n Simple_repeat Simple_repeat 1 28 0 2 1105 518 86 12 0 chr1 68198691 68198772 -128996660 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2 1105 1471 246 67 8 chr1 68198781 68199170 -128996262 - Lx6 LINE L1 -19 7441 7030 2 1105 793 211 20 26 chr1 68199201 68199396 -128996036 - B2_Mm2 SINE B2 -1 194 1 2 1105 1935 196 114 55 chr1 68199432 68199957 -128995475 - Lx9 LINE L1 -2 7642 7087 2 1105 195 345 59 12 chr1 68200322 68200407 -128995025 + MER5A DNA MER1_type 101 189 0 2 1105 333 0 0 0 chr1 68201483 68201520 -128993912 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1105 708 221 81 0 chr1 68203263 68203412 -128992020 - ORR1D1 LTR MaLR -144 230 70 2 1105 346 206 16 0 chr1 68203873 68203936 -128991496 - ORR1D1 LTR MaLR -310 64 1 2 1105 364 352 34 0 chr1 68204358 68204537 -128990895 - Lx8 LINE L1 -299 7174 6990 2 1105 1321 118 5 5 chr1 68204567 68204780 -128990652 + Lx LINE L1 6440 6652 -2 2 1105 243 350 21 14 chr1 68204848 68204990 -128990442 + L2 LINE L2 2261 2403 -1016 2 1105 5551 2 0 0 chr1 68205829 68206442 -128988990 - L1Md_A LINE L1 0 6582 5970 2 1105 923 258 10 0 chr1 68206663 68206872 -128988560 + B3 SINE B2 1 211 -5 2 1105 264 170 0 0 chr1 68207030 68207083 -128988349 + A-rich Low_complexity Low_complexity 1 53 0 3 1105 32 0 0 0 chr1 68207379 68207411 -128988021 + AT_rich Low_complexity Low_complexity 1 32 0 3 1105 317 288 95 32 chr1 68209754 68209912 -128985520 - Tigger15a DNA TcMar -105 610 443 3 1105 266 280 42 21 chr1 68210729 68210824 -128984608 + ORR1E LTR MaLR 251 347 -12 3 1105 1049 82 0 7 chr1 68211033 68211181 -128984251 - L1_Mus2 LINE L1 0 6566 6420 3 1105 458 333 40 7 chr1 68211528 68211679 -128983753 + B3A SINE B2 2 157 -41 3 1105 210 219 0 0 chr1 68211683 68211747 -128983685 + CT-rich Low_complexity Low_complexity 1 64 0 3 1105 189 147 0 0 chr1 68211756 68211790 -128983642 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1105 578 26 0 13 chr1 68213760 68213837 -128981595 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1105 543 107 0 0 chr1 68214443 68214527 -128980905 + (TTTA)n Simple_repeat Simple_repeat 3 86 0 3 1105 560 276 140 115 chr1 68215383 68215747 -128979685 - MTD LTR MaLR -16 384 1 3 1105 1051 272 108 3 chr1 68215860 68216239 -128979193 - MTD LTR MaLR 0 419 1 3 1105 258 257 26 26 chr1 68216439 68216515 -128978917 + ID4_ SINE ID 2 77 -6 3 1105 242 190 0 9 chr1 68216528 68216640 -128978792 + GA-rich Low_complexity Low_complexity 1 110 0 3 1105 1927 262 36 6 chr1 68216700 68217295 -128978137 + Lx2B LINE L1 6349 6996 -1 3 1105 685 201 276 0 chr1 68218513 68218687 -128976745 - URR1A DNA MER1_type 0 226 5 3 1105 210 191 0 0 chr1 68220301 68220348 -128975084 + CT-rich Low_complexity Low_complexity 3 49 0 3 1105 248 224 28 18 chr1 68220675 68220784 -128974648 + CT-rich Low_complexity Low_complexity 3 112 0 3 1105 409 266 8 42 chr1 68220824 68220942 -128974490 - PB1D10 SINE Alu -3 114 1 3 1105 315 113 0 0 chr1 68221792 68221845 -128973587 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 3 1105 576 130 0 0 chr1 68221850 68221942 -128973490 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1105 21 36 0 0 chr1 68222765 68222793 -128972639 + AT_rich Low_complexity Low_complexity 1 28 0 3 1105 233 382 42 42 chr1 68223347 68223489 -128971943 + MER58C DNA MER1_type 2 143 -72 3 1105 870 112 20 0 chr1 68223929 68224081 -128971351 - L1_Mus3 LINE L1 0 6638 6484 3 1105 216 0 0 0 chr1 68224680 68224704 -128970728 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1105 205 159 22 43 chr1 68225944 68225990 -128969442 + MIR SINE MIR 103 147 -115 3 1105 751 294 113 19 chr1 68226569 68226888 -128968544 + ORR1E LTR MaLR 1 349 -10 3 1105 407 362 0 0 chr1 68227898 68228014 -128967418 - PB1D10 SINE Alu -1 116 1 3 1105 232 370 0 0 chr1 68227953 68228026 -128967406 - B4A SINE B4 -146 146 74 3 1105 234 0 0 0 chr1 68228673 68228699 -128966733 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1105 771 290 27 18 chr1 68229791 68230016 -128965416 - L3 LINE CR1 -4233 256 30 3 1105 331 277 14 21 chr1 68230382 68230522 -128964910 + GA-rich Low_complexity Low_complexity 1 139 0 3 1105 989 262 64 123 chr1 68230714 68231154 -128964278 - MTD LTR MaLR -5 414 1 3 1105 1277 78 6 0 chr1 68234459 68234638 -128960794 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1105 969 163 67 24 chr1 68235400 68235608 -128959824 - Lx LINE L1 -6 6648 6432 3 1105 6701 74 22 1 chr1 68235647 68236522 -128958910 - RLTR13B1 LTR ERVK 0 893 1 3 1105 210 378 35 35 chr1 68237039 68237154 -128958278 + PB1D9 SINE Alu 1 115 -5 3 1105 198 171 0 0 chr1 68237995 68238036 -128957396 + A-rich Low_complexity Low_complexity 1 41 0 3 1105 1392 197 72 0 chr1 68239158 68239448 -128955984 - Lx2 LINE L1 0 6997 6687 3 1105 1286 51 11 11 chr1 68240461 68240640 -128954792 - L1Md_F2 LINE L1 0 6582 6404 3 1105 4640 65 0 0 chr1 68240640 68241240 -128954192 + L1_Mm LINE L1 4858 5457 -426 3 1105 893 248 72 5 chr1 68241242 68241465 -128953967 + ORR1D2 LTR MaLR 133 370 0 3 1105 400 201 14 28 chr1 68241540 68241683 -128953749 + CT-rich Low_complexity Low_complexity 5 145 0 3 1105 1089 291 113 41 chr1 68242347 68242536 -128952896 + MLT2B4 LTR ERVL 5 187 -369 3 1105 194 0 39 0 chr1 68242536 68242562 -128952870 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1105 1089 291 113 41 chr1 68242562 68242885 -128952547 + MLT2B4 LTR ERVL 188 553 -3 3 1105 305 279 62 12 chr1 68243721 68243801 -128951631 + B3 SINE B2 113 196 -20 3 1105 213 300 0 0 chr1 68243837 68243907 -128951525 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1105 367 336 33 125 chr1 68243933 68244236 -128951196 - ORR1E LTR MaLR -19 340 66 3 1105 531 234 85 28 chr1 68244237 68244313 -128951119 - B3 SINE B2 -67 149 73 3 1105 1088 139 10 24 chr1 68244313 68244520 -128950912 + L1_Mus3 LINE L1 6418 6621 -17 3 1105 225 0 0 0 chr1 68244520 68244545 -128950887 + (TAA)n Simple_repeat Simple_repeat 3 27 0 3 1105 531 234 85 28 chr1 68244545 68244608 -128950824 - B3 SINE B2 -144 72 4 3 1105 23 0 0 0 chr1 68244945 68244968 -128950464 + AT_rich Low_complexity Low_complexity 1 23 0 3 1105 481 303 7 27 chr1 68245717 68245866 -128949566 + B1_Mur1 SINE Alu 1 146 -3 3 1105 26 0 0 0 chr1 68246302 68246328 -128949104 + AT_rich Low_complexity Low_complexity 1 26 0 3 1105 21 0 0 0 chr1 68246707 68246728 -128948704 + AT_rich Low_complexity Low_complexity 1 21 0 3 1105 359 250 9 88 chr1 68246800 68246914 -128948518 + MT2B LTR ERVL 151 255 -346 3 1105 560 244 16 8 chr1 68246831 68246959 -128948473 + B1_Mus2 SINE Alu 18 146 -1 3 1105 358 218 28 76 chr1 68247080 68247224 -128948208 - Lx7 LINE L1 -1 7695 7559 3 1105 252 100 0 0 chr1 68247262 68247302 -128948130 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1105 1433 266 8 21 chr1 68247313 68247495 -128947937 - Lx7 LINE L1 -293 7403 7227 3 1105 1139 118 32 0 chr1 68247495 68247682 -128947750 + Lx2 LINE L1 6805 6997 0 3 1105 1433 266 8 21 chr1 68247682 68247887 -128947545 - Lx7 LINE L1 -470 7226 7022 3 1105 189 0 0 0 chr1 68248122 68248143 -128947289 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1105 216 0 0 0 chr1 68248143 68248166 -128947266 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1105 387 0 0 0 chr1 68249510 68249553 -128945879 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1105 222 37 0 0 chr1 68252127 68252154 -128943278 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1105 1078 53 0 0 chr1 68252156 68252288 -128943144 - B1_Mus2 SINE Alu -11 136 5 3 1105 22 0 0 0 chr1 68252392 68252414 -128943018 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 207 0 0 0 chr1 68252462 68252485 -128942947 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1105 1067 78 28 0 chr1 68252503 68252645 -128942787 - B1_Mus2 SINE Alu 0 147 2 3 1105 598 269 38 42 chr1 68253433 68253739 -128941693 - ORR1D1 LTR MaLR 0 374 21 3 1105 23 68 0 0 chr1 68254105 68254149 -128941283 + AT_rich Low_complexity Low_complexity 1 44 0 3 1105 5101 50 9 0 chr1 68255944 68256581 -128938851 - L1Md_F2 LINE L1 0 6582 5940 3 1105 1607 313 87 27 chr1 68257527 68258353 -128937079 + Lx9 LINE L1 6549 7424 -220 3 1105 39 50 0 0 chr1 68260531 68260591 -128934841 + AT_rich Low_complexity Low_complexity 1 60 0 3 1105 21 0 0 0 chr1 68260634 68260655 -128934777 + AT_rich Low_complexity Low_complexity 1 21 0 3 1105 770 280 94 16 chr1 68260998 68261252 -128934180 + Lx8 LINE L1 6522 6795 -678 3 1105 821 330 77 32 chr1 68261298 68261790 -128933642 + Lx8 LINE L1 6900 7413 -60 3 1105 305 188 12 0 chr1 68261800 68261880 -128933552 + GA-rich Low_complexity Low_complexity 2 82 0 3 1105 1077 69 21 0 chr1 68262038 68262183 -128933249 + B1_Mus1 SINE Alu 1 148 0 3 1105 444 104 0 0 chr1 68262183 68262250 -128933182 + (A)n Simple_repeat Simple_repeat 1 67 0 3 1105 24 53 0 0 chr1 68262382 68262420 -128933012 + AT_rich Low_complexity Low_complexity 1 38 0 3 1105 27 0 0 0 chr1 68262488 68262515 -128932917 + AT_rich Low_complexity Low_complexity 1 27 0 3 1105 252 296 67 47 chr1 68262533 68262682 -128932750 - RSINE1 SINE B4 -11 154 3 3 1105 242 250 24 0 chr1 68263780 68263864 -128931568 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 1105 252 290 100 14 chr1 68264337 68264407 -128931025 - ID4 SINE ID -5 78 3 3 1105 479 300 171 24 chr1 68264881 68265300 -128930132 - L1MA4 LINE L1 -372 5928 5379 3 1105 1282 310 110 17 chr1 68265316 68266281 -128929151 - L1M3 LINE L1 -1865 4275 3221 3 1105 27 29 0 0 chr1 68266473 68266507 -128928925 + AT_rich Low_complexity Low_complexity 1 34 0 3 1105 27 49 0 0 chr1 68266532 68266573 -128928859 + AT_rich Low_complexity Low_complexity 1 41 0 3 1105 795 261 129 7 chr1 68266819 68267127 -128928305 - Lx2B LINE L1 -8 6992 6649 3 1105 279 0 0 0 chr1 68268008 68268039 -128927393 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1105 367 287 89 8 chr1 68268178 68268301 -128927131 + L1MC LINE L1 5592 5724 -2158 3 1105 250 289 70 55 chr1 68268343 68268471 -128926961 - MIRc SINE MIR -33 235 106 3 1105 693 217 0 8 chr1 68268477 68268607 -128926825 + B1_Mur1 SINE Alu 21 149 0 3 1105 191 152 22 0 chr1 68269848 68269894 -128925538 + CT-rich Low_complexity Low_complexity 4 50 0 3 1105 322 314 76 0 chr1 68269900 68269996 -128925436 - ID4 SINE ID -49 103 2 3 1105 589 276 151 24 chr1 68271310 68271562 -128923870 + Lx7 LINE L1 7045 7328 -368 3 1105 229 222 0 16 chr1 68271599 68271663 -128923769 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1105 210 37 0 0 chr1 68271935 68271962 -128923470 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1105 198 0 0 0 chr1 68272451 68272473 -128922959 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1105 286 281 111 35 chr1 68272911 68273055 -128922377 + Charlie4z DNA MER1_type 7 161 -6 3 1105 22 0 0 0 chr1 68274393 68274415 -128921017 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 199 140 20 20 chr1 68274765 68274816 -128920616 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1105 271 321 73 0 chr1 68275217 68275326 -128920106 + PB1D9 SINE Alu 3 119 -1 4 1105 3349 48 2 9 chr1 68275616 68276039 -128919393 + L1Md_F2 LINE L1 6163 6582 0 4 1105 8111 145 29 26 chr1 68276259 68276549 -128918883 + L1_Mus3 LINE L1 4443 4731 -1152 4 1105 189 0 0 0 chr1 68276549 68276570 -128918862 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1105 8111 114 23 31 chr1 68276570 68278449 -128916983 + L1_Mus3 LINE L1 4732 6634 -4 4 1105 393 329 172 28 chr1 68278812 68279097 -128916335 + LTR41B LTR ERVL 421 746 -12 4 1105 25 99 0 0 chr1 68279550 68279631 -128915801 + AT_rich Low_complexity Low_complexity 1 81 0 4 1105 276 195 26 13 chr1 68279760 68279838 -128915594 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1105 471 100 0 0 chr1 68280097 68280167 -128915265 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 4 1105 917 262 86 48 chr1 68282235 68282615 -128912817 - MTD LTR MaLR -14 405 24 4 1105 2562 32 22 0 chr1 68282936 68283251 -128912181 - L1Md_F2 LINE L1 -3 6579 6258 4 1105 23 54 0 0 chr1 68283443 68283480 -128911952 + AT_rich Low_complexity Low_complexity 1 37 0 4 1105 21 0 0 0 chr1 68283518 68283539 -128911893 + AT_rich Low_complexity Low_complexity 1 21 0 4 1105 718 297 71 22 chr1 68284077 68284346 -128911086 + B4A SINE B4 7 288 -4 4 1105 578 26 0 13 chr1 68285799 68285876 -128909556 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 1105 1990 252 49 101 chr1 68286225 68286403 -128909029 + Lx6 LINE L1 6301 6467 -993 4 1105 534 16 0 0 chr1 68286403 68286466 -128908966 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4 1105 1990 252 49 101 chr1 68286466 68286938 -128908494 + Lx6 LINE L1 6468 6906 -554 4 1105 1386 0 0 0 chr1 68286938 68287092 -128908340 + (GGGAGA)n Simple_repeat Simple_repeat 4 157 0 4 1105 1990 252 49 101 chr1 68287092 68287191 -128908241 + Lx6 LINE L1 6907 7012 -448 4 138 7599 89 11 12 chr1 68287191 68288977 -128906455 + L1_Mus2 LINE L1 4785 6565 -1 4 1106 351 262 87 0 chr1 68289061 68289164 -128906268 - B4 SINE B4 -178 114 3 4 1106 1615 71 0 14 chr1 68289343 68289608 -128905824 - L1Md_F2 LINE L1 0 6582 6348 4 1106 288 151 5 8 chr1 68290788 68290849 -128904583 + B1_Mus1 SINE Alu 3 58 -62 4 1106 495 228 0 0 chr1 68290915 68291095 -128904337 + GA-rich Low_complexity Low_complexity 1 180 0 4 1106 634 152 9 19 chr1 68291121 68291228 -128904204 + B1_Mus2 SINE Alu 42 147 0 4 1106 200 268 154 35 chr1 68291492 68291635 -128903797 - L2 LINE L2 -458 2961 2802 4 1106 929 306 0 8 chr1 68291649 68291896 -128903536 + B4A SINE B4 9 253 -39 4 1106 2019 108 58 32 chr1 68291958 68292302 -128903130 - Lx LINE L1 -1 6653 6301 4 1106 209 196 0 19 chr1 68293917 68293969 -128901463 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1106 194 344 78 0 chr1 68294001 68294065 -128901367 + L4 LINE RTE 1095 1163 -866 4 1106 22 35 0 0 chr1 68296301 68296330 -128899102 + AT_rich Low_complexity Low_complexity 1 29 0 4 1106 402 216 24 8 chr1 68297351 68297477 -128897955 - Lx9 LINE L1 -1 7643 7516 4 1106 36 53 0 0 chr1 68299032 68299089 -128896343 + AT_rich Low_complexity Low_complexity 1 57 0 4 1106 398 318 20 10 chr1 68299426 68299536 -128895896 - PB1 SINE Alu -91 220 20 4 1106 258 169 0 0 chr1 68299569 68299634 -128895798 + GA-rich Low_complexity Low_complexity 1 65 0 4 1106 438 20 0 0 chr1 68299640 68299691 -128895741 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1106 273 279 155 68 chr1 68299908 68300127 -128895305 + RMER2 LTR ERV1 330 567 0 4 1106 817 261 34 13 chr1 68300761 68300998 -128894434 + Lx2B LINE L1 6759 7000 0 4 1106 252 0 0 0 chr1 68301671 68301699 -128893733 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1106 1620 135 8 0 chr1 68301903 68302163 -128893269 + Lx3C LINE L1 5703 5964 -1012 4 1106 3997 195 39 21 chr1 68302164 68303009 -128892423 + Lx3C LINE L1 6105 6964 -12 4 1106 306 0 0 0 chr1 68303011 68303045 -128892387 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 1106 922 164 25 71 chr1 68303187 68303384 -128892048 - B2_Mm2 SINE B2 -4 191 4 4 1106 441 340 93 42 chr1 68303447 68303757 -128891675 + MER44A DNA MER2_type 4 329 -10 4 1106 21 0 0 0 chr1 68303888 68303909 -128891523 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 504 311 102 34 chr1 68304455 68304721 -128890711 - B4 SINE B4 -6 286 3 4 1106 1348 42 0 0 chr1 68305539 68305707 -128889725 + L1_Mus1 LINE L1 6400 6567 0 4 1106 23 0 0 0 chr1 68305898 68305921 -128889511 + AT_rich Low_complexity Low_complexity 1 23 0 4 1106 357 106 0 57 chr1 68306852 68306922 -128888510 - L1_Mus1 LINE L1 -2 6565 6500 4 1106 225 0 0 0 chr1 68307753 68307778 -128887654 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1106 531 252 0 50 chr1 68308245 68308366 -128887066 - PB1D10 SINE Alu -2 115 1 4 1106 1175 68 0 0 chr1 68308846 68308993 -128886439 - B1_Mus1 SINE Alu 0 148 2 4 1106 26 50 0 0 chr1 68309423 68309463 -128885969 + AT_rich Low_complexity Low_complexity 1 40 0 4 1106 3587 126 28 87 chr1 68309958 68310756 -128884676 + RMER17A LTR ERVK 1 751 0 4 1106 240 35 0 0 chr1 68311032 68311061 -128884371 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1106 655 291 0 7 chr1 68311156 68311308 -128884124 - B3A SINE B2 -47 151 1 4 1106 1919 289 24 57 chr1 68311808 68312774 -128882658 + Lx5 LINE L1 6174 7042 -16 4 1106 681 295 114 37 chr1 68313443 68313795 -128881637 + MTEa LTR MaLR 1 379 0 4 1106 38361 7 0 0 chr1 68314702 68320043 -128875389 + L1Md_A LINE L1 245 5586 -297 4 1106 8964 4 0 0 chr1 68320043 68321063 -128874369 + L1Md_A LINE L1 5587 6582 0 4 1106 324 0 0 0 chr1 68321144 68321180 -128874252 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1106 394 330 0 9 chr1 68321792 68321905 -128873527 - B1_Mur2 SINE Alu -5 144 33 4 1106 224 325 0 42 chr1 68323752 68323817 -128871615 + polypurine Low_complexity Low_complexity 2 64 0 4 1106 540 0 0 0 chr1 68323817 68323877 -128871555 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1106 224 325 0 42 chr1 68323877 68323930 -128871502 + polypurine Low_complexity Low_complexity 65 115 0 4 1106 1095 148 0 0 chr1 68324484 68324767 -128870665 + (TG)n Simple_repeat Simple_repeat 1 283 0 4 1106 495 0 0 0 chr1 68326501 68326556 -128868876 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 4 1106 745 260 135 26 chr1 68326638 68326858 -128868574 + RLTR11A2 LTR ERVK 1 255 -272 4 1106 915 115 19 0 chr1 68326858 68327015 -128868417 + (GGA)n Simple_repeat Simple_repeat 3 162 0 4 1106 432 0 0 0 chr1 68327015 68327063 -128868369 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 4 1106 745 260 135 26 chr1 68327063 68327153 -128868279 + RLTR11A2 LTR ERVK 256 345 -182 4 1106 549 44 0 0 chr1 68327865 68327933 -128867499 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1106 247 321 82 75 chr1 68328468 68328642 -128866790 + MIRb SINE MIR 2 174 -94 4 1106 621 86 0 0 chr1 68329804 68329885 -128865547 - L1_Mus2 LINE L1 -366 6200 6120 4 1106 1104 126 37 0 chr1 68329886 68330077 -128865355 + L1_Mus3 LINE L1 6438 6635 -3 4 1106 23 33 0 0 chr1 68330314 68330344 -128865088 + AT_rich Low_complexity Low_complexity 1 30 0 4 1106 319 273 40 20 chr1 68330759 68330860 -128864572 + MLT1E3 LTR MaLR 22 124 -500 4 1106 370 291 131 13 chr1 68331111 68331264 -128864168 + MLT1E3 LTR MaLR 380 550 -74 4 1106 4128 83 3 17 chr1 68334176 68334755 -128860677 + L1_Mus1 LINE L1 5997 6567 0 4 1106 243 291 76 19 chr1 68334858 68334963 -128860469 - MIRb SINE MIR -121 147 37 4 1106 263 250 91 30 chr1 68335463 68335595 -128859837 + L1ME3 LINE L1 5845 5984 -178 4 1106 24 32 0 0 chr1 68335900 68335931 -128859501 + AT_rich Low_complexity Low_complexity 1 31 0 4 1106 831 299 81 16 chr1 68335965 68336349 -128859083 - L1ME1 LINE L1 -102 6077 5669 4 1106 21 0 0 0 chr1 68336557 68336578 -128858854 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 271 305 19 119 chr1 68338607 68338767 -128856665 - L2c LINE L2 -1 3386 3243 4 1106 234 359 17 12 chr1 68339113 68339285 -128856147 + Lx8 LINE L1 5722 5894 -1579 4 1106 186 43 0 0 chr1 68339318 68339341 -128856091 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1106 306 341 16 63 chr1 68340657 68340829 -128854603 + B3A SINE B2 2 166 -32 4 1106 216 0 0 0 chr1 68340829 68340853 -128854579 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1106 306 341 16 63 chr1 68340853 68340871 -128854561 + B3A SINE B2 167 183 -15 4 1106 195 42 0 0 chr1 68340876 68340900 -128854532 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 4 1106 294 368 97 0 chr1 68341572 68341686 -128853746 - B1F2 SINE Alu -20 129 5 4 1106 952 306 94 29 chr1 68341802 68342152 -128853280 + MTD LTR MaLR 17 389 -30 4 1106 249 163 0 0 chr1 68342273 68342322 -128853110 + CT-rich Low_complexity Low_complexity 3 51 0 4 1106 1541 162 79 25 chr1 68345609 68345926 -128849506 + Lx2 LINE L1 6662 6995 -2 4 1106 301 279 37 28 chr1 68346333 68346440 -128848992 - PB1D10 SINE Alu -7 110 3 4 1106 24 0 0 0 chr1 68346772 68346796 -128848636 + AT_rich Low_complexity Low_complexity 1 24 0 4 1106 23 0 0 0 chr1 68347834 68347857 -128847575 + AT_rich Low_complexity Low_complexity 1 23 0 4 1106 6249 112 16 2 chr1 68348023 68348949 -128846483 + Lx2 LINE L1 6058 6996 -1 4 1106 2205 55 52 184 chr1 68349126 68349571 -128845861 + RLTR10 LTR ERVK 1 386 -4 4 1106 1810 254 86 13 chr1 68349746 68350213 -128845219 + Lx5 LINE L1 6473 6973 -77 4 1106 742 208 0 0 chr1 68350332 68350457 -128844975 - B3 SINE B2 -88 128 4 4 1106 25 0 0 0 chr1 68355050 68355075 -128840357 + AT_rich Low_complexity Low_complexity 1 25 0 4 1106 765 158 7 14 chr1 68355687 68355828 -128839604 + URR1B DNA MER1_type 83 222 -3 4 1106 22 70 0 0 chr1 68356396 68356439 -128838993 + AT_rich Low_complexity Low_complexity 1 43 0 4 1106 404 67 17 0 chr1 68356778 68356838 -128838594 + RLTR26 LTR ERVK 1 61 -581 4 1106 21 0 0 0 chr1 68356980 68357001 -128838431 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 21 36 0 0 chr1 68357932 68357960 -128837472 + AT_rich Low_complexity Low_complexity 1 28 0 5 1106 210 226 0 67 chr1 68358283 68358319 -128837113 + T-rich Low_complexity Low_complexity 53 84 0 5 1106 1163 68 0 0 chr1 68358319 68358467 -128836965 - B1_Mus1 SINE Alu 0 148 1 5 1106 210 226 0 67 chr1 68358467 68358520 -128836912 + T-rich Low_complexity Low_complexity 2 52 0 5 1106 330 288 122 38 chr1 68358970 68359183 -128836249 - L1MD1 LINE L1 -289 5953 5723 5 1106 852 299 103 47 chr1 68359191 68359531 -128835901 - MTE2b LTR MaLR -19 360 2 5 1106 244 371 58 16 chr1 68359739 68360051 -128835381 - L1MDa LINE L1 -6225 408 84 5 1106 3963 82 8 0 chr1 68361993 68362519 -128832913 + L1_Mus1 LINE L1 6038 6567 0 5 1106 1769 44 0 9 chr1 68362593 68362822 -128832610 - L1Md_F2 LINE L1 -3 6579 6353 5 1106 28 61 0 0 chr1 68362843 68362892 -128832540 + AT_rich Low_complexity Low_complexity 1 49 0 5 1106 660 249 141 10 chr1 68363183 68363382 -128832050 - RMER1C Other Other -8 1334 1110 5 1106 3773 129 25 7 chr1 68363378 68363969 -128831463 + Lx3C LINE L1 6180 6781 -195 5 1106 954 257 143 40 chr1 68363964 68364285 -128831147 - RMER1C Other Other -246 1096 743 5 1106 243 287 52 0 chr1 68364397 68364512 -128830920 - Lx9 LINE L1 -137 7507 7387 5 1106 244 0 27 27 chr1 68365250 68365287 -128830145 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1106 25 31 0 0 chr1 68366012 68366044 -128829388 + AT_rich Low_complexity Low_complexity 1 32 0 5 1106 619 284 34 51 chr1 68366593 68366830 -128828602 + MER2 DNA MER2_type 113 345 0 5 1106 2982 258 32 11 chr1 68367062 68367800 -128827632 + L1_Mur3 LINE L1 394 1147 -6565 5 1106 17620 106 27 8 chr1 68367799 68371191 -128824241 + L1_Mur1 LINE L1 676 4530 -1356 5 1106 6913 113 33 5 chr1 68371191 68372250 -128823182 + Lx3_Mus LINE L1 5921 7009 0 5 1106 855 190 98 0 chr1 68372266 68372519 -128822913 + L1_Mur3 LINE L1 1173 1450 -4430 5 1106 590 271 78 25 chr1 68372627 68372831 -128822601 + MT2A LTR ERVL 319 533 0 5 1106 270 81 0 0 chr1 68375074 68375111 -128820321 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1106 195 42 0 0 chr1 68375116 68375140 -128820292 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1106 530 144 34 8 chr1 68375214 68375333 -128820099 + Lx3A LINE L1 6856 6977 -4 5 1106 1439 78 16 0 chr1 68375360 68375552 -128819880 + B2_Mm2 SINE B2 1 195 0 5 1106 280 265 110 35 chr1 68375779 68376006 -128819426 - L1M2 LINE L1 -698 5599 5356 5 1106 206 0 69 0 chr1 68376117 68376146 -128819286 + (TTTAA)n Simple_repeat Simple_repeat 1 31 0 5 1106 701 156 149 0 chr1 68376147 68376288 -128819144 - Lx4A LINE L1 -2 7056 6895 5 1106 253 111 28 0 chr1 68376288 68376324 -128819108 - Lx4A LINE L1 -139 6919 6883 5 1106 24 0 0 0 chr1 68377034 68377058 -128818374 + AT_rich Low_complexity Low_complexity 1 24 0 5 1106 702 24 0 0 chr1 68377668 68377752 -128817680 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1106 252 0 0 0 chr1 68377752 68377779 -128817653 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1106 6973 90 53 22 chr1 68378002 68379099 -128816333 - L1_Mus3 LINE L1 -7 6631 5506 5 1106 263 250 28 0 chr1 68380065 68380137 -128815295 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1106 330 218 76 88 chr1 68380222 68380393 -128815039 - Lx8 LINE L1 -2 7471 7303 5 1106 2347 127 46 10 chr1 68380398 68380787 -128814645 + RLTR9E LTR ERVK 7 409 0 5 1106 531 284 85 6 chr1 68380859 68381036 -128814396 - Lx8 LINE L1 -254 7219 7029 5 1106 21 36 0 0 chr1 68383162 68383190 -128812242 + AT_rich Low_complexity Low_complexity 1 28 0 5 1106 243 0 0 0 chr1 68383574 68383601 -128811831 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1106 234 0 0 0 chr1 68383601 68383626 -128811806 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1106 468 0 0 0 chr1 68383941 68383993 -128811439 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1106 312 267 89 0 chr1 68384112 68384202 -128811230 + MTE2b LTR MaLR 1 98 -281 5 1106 379 347 24 0 chr1 68384202 68384326 -128811106 + MTE2b LTR MaLR 58 184 -195 5 1106 402 204 0 0 chr1 68384328 68384421 -128811011 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 5 1106 282 287 112 24 chr1 68384442 68384567 -128810865 + MTE2b LTR MaLR 239 374 0 5 1106 210 143 0 0 chr1 68385553 68385588 -128809844 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1106 650 224 11 31 chr1 68386209 68386375 -128809057 - B1_Mus2 SINE Alu 0 149 1 5 1106 285 29 0 0 chr1 68386589 68386623 -128808809 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1106 506 316 42 42 chr1 68386653 68386917 -128808515 - Lx7 LINE L1 -396 7300 7037 5 1106 221 298 0 0 chr1 68386981 68387028 -128808404 + B1_Mus2 SINE Alu 3 49 -98 5 1106 21 0 0 0 chr1 68387037 68387058 -128808374 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 768 241 143 60 chr1 68387154 68387601 -128807831 - L1MA4 LINE L1 -403 5897 5414 5 1106 1937 189 146 30 chr1 68387609 68388328 -128807104 + RMER6A LTR ERVK 1 756 0 5 1106 5533 169 6 2 chr1 68388493 68389477 -128805955 + Lx2 LINE L1 5999 6986 -11 5 1106 23 0 0 0 chr1 68389715 68389738 -128805694 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 259 113 38 0 chr1 68389779 68389832 -128805600 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1106 226 245 0 0 chr1 68389884 68389937 -128805495 + GA-rich Low_complexity Low_complexity 4 56 0 5 1106 333 47 0 0 chr1 68390067 68390110 -128805322 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1106 538 214 0 73 chr1 68390186 68390322 -128805110 + B1_Mur3 SINE Alu 24 149 0 5 1106 327 78 0 0 chr1 68391569 68391620 -128803812 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1106 276 203 46 15 chr1 68392166 68392231 -128803201 + MTEa LTR MaLR 313 379 0 5 1106 209 139 23 0 chr1 68393504 68393547 -128801885 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 5 1106 27 0 0 0 chr1 68395303 68395330 -128800102 + AT_rich Low_complexity Low_complexity 1 27 0 5 1106 205 109 43 0 chr1 68396163 68396209 -128799223 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1106 12490 69 4 7 chr1 68396292 68396318 -128799114 + L1Md_F2 LINE L1 3899 3924 -1959 5 1106 2806 33 191 0 chr1 68396318 68396684 -128798748 + RLTR10C LTR ERVK 1 436 0 5 1106 12490 69 4 7 chr1 68396684 68398350 -128797082 + L1Md_F2 LINE L1 3925 5586 -297 5 1106 7248 75 15 8 chr1 68398351 68399339 -128796093 + L1Md_F2 LINE L1 5588 6582 0 5 1106 201 190 25 25 chr1 68399423 68399504 -128795928 + GA-rich Low_complexity Low_complexity 3 83 0 5 1106 289 123 31 0 chr1 68399696 68399761 -128795671 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1106 3141 65 0 7 chr1 68400001 68400404 -128795028 + L1Md_F2 LINE L1 5616 6015 -567 5 1106 936 172 0 0 chr1 68400404 68400578 -128794854 + (TA)n Simple_repeat Simple_repeat 2 175 0 5 1106 32 26 0 0 chr1 68401189 68401228 -128794204 + AT_rich Low_complexity Low_complexity 1 39 0 5 1106 23 0 0 0 chr1 68401341 68401364 -128794068 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 297 0 0 0 chr1 68401821 68401854 -128793578 + (TAA)n Simple_repeat Simple_repeat 2 34 0 5 1106 230 29 59 0 chr1 68402269 68402303 -128793129 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 1106 345 21 0 0 chr1 68402303 68402350 -128793082 - B1_Mm SINE Alu -2 145 99 5 1106 25 0 0 0 chr1 68404005 68404030 -128791402 + AT_rich Low_complexity Low_complexity 1 25 0 5 1106 253 294 62 31 chr1 68404108 68404238 -128791194 + RMER12 LTR ERVK 723 856 -466 5 1106 723 349 20 64 chr1 68404287 68404584 -128790848 - B4A SINE B4 -5 287 4 5 1106 244 349 19 0 chr1 68404662 68404768 -128790664 + PB1D10 SINE Alu 2 109 -8 5 1106 200 227 0 0 chr1 68405559 68405603 -128789829 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1106 230 370 18 9 chr1 68405761 68405870 -128789562 - MIRc SINE MIR -102 166 57 5 1106 4097 77 0 77 chr1 68406001 68406609 -128788823 - L1_Mus1 LINE L1 0 6567 6007 5 1106 657 191 87 38 chr1 68407083 68407268 -128788164 + Lx4B LINE L1 6857 7050 -8 5 1106 21 0 0 0 chr1 68407272 68407293 -128788139 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 21 0 0 0 chr1 68408422 68408443 -128786989 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 23 0 0 0 chr1 68410999 68411022 -128784410 + AT_rich Low_complexity Low_complexity 1 23 0 5 1106 519 180 0 0 chr1 68411574 68411674 -128783758 - Lx3A LINE L1 -5 6976 6877 5 1106 504 45 0 0 chr1 68411918 68411985 -128783447 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1106 226 139 0 0 chr1 68412052 68412088 -128783344 - U2 snRNA snRNA -152 36 1 5 1106 308 362 15 45 chr1 68412242 68412375 -128783057 + B4A SINE B4 1 129 -163 5 1106 291 157 0 0 chr1 68413082 68413133 -128782299 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 5 1106 213 39 0 0 chr1 68413133 68413159 -128782273 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1106 2013 331 63 30 chr1 68413168 68414411 -128781021 + Lx9 LINE L1 6334 7617 -27 5 1106 4980 82 4 1 chr1 68414821 68415496 -128779936 - L1_Mus1 LINE L1 0 6567 5891 5 1106 24 53 0 0 chr1 68415869 68415907 -128779525 + AT_rich Low_complexity Low_complexity 1 38 0 5 1106 27 29 0 0 chr1 68415973 68416007 -128779425 + AT_rich Low_complexity Low_complexity 1 34 0 5 1106 21 0 0 0 chr1 68418442 68418463 -128776969 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 21 0 0 0 chr1 68418775 68418796 -128776636 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 1043 73 0 0 chr1 68418996 68419133 -128776299 - B1_Mus1 SINE Alu -10 138 2 5 1107 409 224 0 0 chr1 68420392 68420490 -128774942 - Lx6 LINE L1 -6 7454 7357 5 1107 282 56 0 0 chr1 68420490 68420526 -128774906 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1107 225 0 0 0 chr1 68420527 68420552 -128774880 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1107 186 43 0 0 chr1 68420584 68420607 -128774825 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1107 2313 274 29 59 chr1 68420704 68421485 -128773947 - Lx7 LINE L1 -380 7316 6559 6 1107 240 57 94 0 chr1 68421485 68421538 -128773894 + T-rich Low_complexity Low_complexity 2 59 0 6 1107 2662 70 83 0 chr1 68421540 68421912 -128773520 - L1_Mus1 LINE L1 0 6567 6165 6 1107 944 236 60 38 chr1 68422490 68422807 -128772625 - Lx7 LINE L1 -1 7695 7372 6 1107 1765 228 88 2 chr1 68422845 68423275 -128772157 - Lx7 LINE L1 -444 7252 6786 6 1107 180 111 0 0 chr1 68423315 68423342 -128772090 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1107 22 0 0 0 chr1 68424134 68424156 -128771276 + AT_rich Low_complexity Low_complexity 1 22 0 6 1107 275 368 37 27 chr1 68425224 68425411 -128770021 - Lx8 LINE L1 -132 7341 7153 6 1107 456 104 0 0 chr1 68425578 68425645 -128769787 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1107 235 346 58 68 chr1 68426860 68427260 -128768172 + L3 LINE CR1 3337 3732 -757 6 1107 226 350 28 123 chr1 68427354 68427533 -128767899 - MTC-int LTR MaLR -361 897 736 6 1107 271 108 0 44 chr1 68428093 68428161 -128767271 + A-rich Low_complexity Low_complexity 1 65 0 6 1107 205 353 0 0 chr1 68429077 68429145 -128766287 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1107 239 0 0 31 chr1 68429935 68429967 -128765465 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1107 909 110 0 0 chr1 68432185 68432321 -128763111 + (GA)n Simple_repeat Simple_repeat 2 137 0 6 1107 1320 172 126 14 chr1 68432422 68432700 -128762732 + RLTR27 LTR ERVK 1 309 0 6 1107 634 302 12 55 chr1 68432915 68433258 -128762174 - Lx9 LINE L1 -6 7638 7311 6 1107 1263 138 22 18 chr1 68433417 68433639 -128761793 - Lx2 LINE L1 0 6997 6775 6 1107 2886 119 14 5 chr1 68433639 68434076 -128761356 - Lx2 LINE L1 -354 6643 6203 6 1107 245 270 78 16 chr1 68434164 68434228 -128761204 + PB1D10 SINE Alu 49 116 -1 6 1107 4610 160 66 31 chr1 68434246 68435173 -128760259 + Lx2B LINE L1 6038 6996 -4 6 1107 202 219 15 30 chr1 68435177 68435243 -128760189 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 6 1107 728 207 37 0 chr1 68435544 68435708 -128759724 + L1_Mur3 LINE L1 2467 2636 -3244 6 1107 2307 166 38 133 chr1 68435842 68436524 -128758908 + L1_Mur3 LINE L1 2631 3247 -2633 6 1107 274 216 11 24 chr1 68436523 68436608 -128758824 + L1_Mur3 LINE L1 2722 2809 -3068 6 1107 279 188 38 0 chr1 68436580 68436660 -128758772 + L1_Mur3 LINE L1 3233 3315 -2565 6 1107 21 0 0 0 chr1 68436724 68436745 -128758687 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 201 39 0 0 chr1 68436920 68436946 -128758486 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1107 297 78 10 0 chr1 68437356 68437423 -128758009 + L1_Mus2 LINE L1 6522 6629 -7 6 1107 568 279 6 19 chr1 68437540 68437697 -128757735 - Lx6 LINE L1 -6 7454 7300 6 1107 4166 238 51 19 chr1 68437700 68438744 -128756688 + Lx6 LINE L1 6215 7291 -169 6 1107 1433 274 119 33 chr1 68439733 68440558 -128754874 - L1_Mur3 LINE L1 -1218 4662 3767 6 1107 31 44 0 0 chr1 68440884 68440929 -128754503 + AT_rich Low_complexity Low_complexity 1 45 0 6 1107 247 113 0 36 chr1 68440990 68441045 -128754387 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1107 21 36 0 0 chr1 68441050 68441078 -128754354 + AT_rich Low_complexity Low_complexity 1 28 0 6 1107 343 373 19 0 chr1 68442527 68442685 -128752747 + RSINE1 SINE B4 3 163 -2 6 1107 37 39 0 0 chr1 68443198 68443249 -128752183 + AT_rich Low_complexity Low_complexity 1 51 0 6 1107 314 281 69 17 chr1 68443675 68443849 -128751583 + L1MA4 LINE L1 5753 5935 -365 6 1107 180 0 0 0 chr1 68444831 68444851 -128750581 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1107 27 29 0 0 chr1 68445694 68445728 -128749704 + AT_rich Low_complexity Low_complexity 1 34 0 6 1107 26 30 0 0 chr1 68445823 68445856 -128749576 + AT_rich Low_complexity Low_complexity 1 33 0 6 1107 38 61 0 0 chr1 68446546 68446612 -128748820 + AT_rich Low_complexity Low_complexity 1 66 0 6 1107 542 257 9 52 chr1 68448630 68448745 -128746687 + RSINE1 SINE B4 23 132 -33 6 1107 21 0 0 0 chr1 68449191 68449212 -128746220 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 237 65 0 0 chr1 68449415 68449446 -128745986 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1107 855 96 83 6 chr1 68450282 68450439 -128744993 + Lx2 LINE L1 6827 6995 -2 6 1107 420 143 0 0 chr1 68450440 68450510 -128744922 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 1107 37859 15 1 7 chr1 68452425 68457630 -128737802 + L1Md_A LINE L1 416 5586 -297 6 1107 8729 18 0 0 chr1 68457630 68458626 -128736806 + L1Md_A LINE L1 5587 6582 0 6 1107 6657 46 47 6 chr1 68458745 68459601 -128735831 + L1Md_F2 LINE L1 5692 6582 0 6 1107 235 337 77 39 chr1 68460906 68461088 -128734344 - MIRb SINE MIR -64 204 16 6 1107 260 290 159 0 chr1 68461389 68461496 -128733936 - MamRep434 DNA TcMar 0 426 303 6 1107 583 252 219 9 chr1 68461627 68461855 -128733577 - Lx3C LINE L1 -10 6990 6715 6 1107 180 0 0 0 chr1 68462335 68462355 -128733077 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1107 1164 62 14 0 chr1 68462358 68462503 -128732929 - B1_Mm SINE Alu 0 147 1 6 1107 24 32 0 0 chr1 68462853 68462884 -128732548 + AT_rich Low_complexity Low_complexity 1 31 0 6 1107 3879 194 48 29 chr1 68464121 68465048 -128730384 + Lx4B LINE L1 5962 7010 -48 6 1107 21 24 0 47 chr1 68465062 68465083 -128730349 + AT_rich Low_complexity Low_complexity 1 20 0 6 1107 767 244 13 56 chr1 68465083 68465317 -128730115 + URR1B DNA MER1_type 1 224 -1 6 1107 21 24 0 47 chr1 68465317 68465338 -128730094 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 543 226 0 0 chr1 68465502 68465666 -128729766 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 1107 3966 155 86 46 chr1 68465944 68467141 -128728291 + Lx2 LINE L1 5714 6936 -61 6 1107 22 35 0 0 chr1 68467587 68467616 -128727816 + AT_rich Low_complexity Low_complexity 1 29 0 6 1107 364 308 9 19 chr1 68468047 68468153 -128727279 + RSINE1 SINE B4 13 117 -48 6 1107 505 40 0 26 chr1 68468259 68468337 -128727095 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 6 1107 3621 48 26 4 chr1 68468337 68468793 -128726639 - L1Md_F2 LINE L1 -40 6542 6077 6 1107 546 16 0 0 chr1 68470069 68470132 -128725300 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1107 30 69 0 0 chr1 68470542 68470600 -128724832 + AT_rich Low_complexity Low_complexity 1 58 0 6 1107 319 248 43 14 chr1 68470727 68470935 -128724497 + (TA)n Simple_repeat Simple_repeat 1 213 0 6 1107 295 362 33 70 chr1 68470936 68471177 -128724255 + AmnSINE1 SINE SINE 126 357 -218 6 1107 199 118 0 0 chr1 68471632 68471666 -128723766 - L3 LINE CR1 -3521 968 935 6 1107 6754 35 0 0 chr1 68471748 68472550 -128722882 + L1Md_T LINE L1 5781 6582 0 6 1107 188 270 83 50 chr1 68472987 68473108 -128722324 - MIR SINE MIR -43 219 95 6 1107 34 42 0 0 chr1 68473728 68473776 -128721656 + AT_rich Low_complexity Low_complexity 1 48 0 6 1107 2007 146 19 0 chr1 68473968 68474289 -128721143 - ORR1A2 LTR MaLR 0 327 1 6 1107 33 43 0 0 chr1 68474546 68474593 -128720839 + AT_rich Low_complexity Low_complexity 1 47 0 6 1107 2761 219 15 25 chr1 68474900 68475513 -128719919 + Lx2B LINE L1 6356 6931 -69 6 1107 1679 48 0 0 chr1 68476475 68476685 -128718747 - L1Md_T LINE L1 -1 6581 6372 6 1107 21 0 0 0 chr1 68477018 68477039 -128718393 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 400 312 62 66 chr1 68477279 68477553 -128717879 - B4A SINE B4 -18 274 2 6 1107 21 0 0 0 chr1 68477627 68477648 -128717784 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 243 284 133 27 chr1 68479066 68479254 -128716178 + L2a LINE L2 3213 3420 -6 6 1107 21 0 0 0 chr1 68480073 68480094 -128715338 + AT_rich Low_complexity Low_complexity 1 21 0 6 1107 263 268 29 73 chr1 68480223 68480360 -128715072 - Lx LINE L1 -8 7636 7506 6 1107 6910 122 60 55 chr1 68481231 68482458 -128712974 + Lx2 LINE L1 5763 6996 -1 6 1107 1775 229 33 5 chr1 68483065 68483461 -128711971 - Lx LINE L1 -7 6647 6241 6 1107 658 170 0 0 chr1 68483461 68483567 -128711865 + Lx LINE L1 6123 6228 -426 6 1107 634 308 23 0 chr1 68483870 68484084 -128711348 - ID_B1 SINE B4 -4 220 2 6 1107 365 39 0 19 chr1 68484089 68484141 -128711291 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1107 29 28 0 0 chr1 68484190 68484226 -128711206 + AT_rich Low_complexity Low_complexity 1 36 0 6 1107 1375 167 4 8 chr1 68484401 68484637 -128710795 - RMER6C LTR ERVK 0 690 456 6 1107 31 44 0 0 chr1 68484656 68484701 -128710731 + AT_rich Low_complexity Low_complexity 1 45 0 6 1107 267 304 0 0 chr1 68484963 68485042 -128710390 + ID4 SINE ID 5 83 0 6 1107 279 0 0 0 chr1 68487376 68487407 -128708025 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1107 414 271 57 51 chr1 68487831 68488006 -128707426 + Lx9 LINE L1 7266 7441 -203 6 1107 559 307 63 46 chr1 68488118 68488357 -128707075 + ORR1E LTR MaLR 8 250 -109 6 1107 329 399 25 8 chr1 68489778 68490013 -128705419 - Lx8 LINE L1 -262 7211 6973 6 1107 1936 274 34 19 chr1 68490187 68490774 -128704658 + Lx9 LINE L1 6319 6914 -730 6 1107 288 172 0 0 chr1 68492215 68492273 -128703159 + (CAT)n Simple_repeat Simple_repeat 3 60 0 6 1107 356 262 176 0 chr1 68492512 68492699 -128702733 + Lx9 LINE L1 7423 7642 -2 6 1107 242 259 300 60 chr1 68492925 68493278 -128702154 + Charlie7 DNA MER1_type 267 704 -1908 6 1107 1476 154 120 0 chr1 68493337 68493629 -128701803 + Lx3C LINE L1 6649 6975 -1 6 1107 372 336 10 0 chr1 68493938 68494042 -128701390 - Lx8 LINE L1 -252 7221 7117 6 1107 1048 65 10 0 chr1 68494097 68494250 -128701182 - L1_Mur2 LINE L1 -3367 2510 2343 6 1107 234 0 0 0 chr1 68494747 68494773 -128700659 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 6 1107 3937 68 2 0 chr1 68497297 68497798 -128697634 + L1_Mus1 LINE L1 6062 6563 -4 6 1107 253 36 91 0 chr1 68497823 68497878 -128697554 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1107 279 300 0 12 chr1 68497879 68497960 -128697472 + RMER30 DNA MER1_type 113 192 -10 6 1107 273 231 0 0 chr1 68501065 68501117 -128694315 - PB1D9 SINE Alu -67 53 2 1 1107 25 51 0 0 chr1 68501219 68501258 -128694174 + AT_rich Low_complexity Low_complexity 1 39 0 2 1107 31 0 0 0 chr1 68501348 68501379 -128694053 + AT_rich Low_complexity Low_complexity 1 31 0 3 1107 611 170 193 0 chr1 68501379 68501514 -128693918 - Lx4A LINE L1 -10 7048 6888 4 1107 197 100 50 0 chr1 68502167 68502207 -128693225 + (TTTTTG)n Simple_repeat Simple_repeat 4 45 0 5 1107 1095 95 0 0 chr1 68502207 68502354 -128693078 - B1_Mus1 SINE Alu 0 148 2 6 1107 331 360 97 11 chr1 68502614 68502892 -128692540 - L1MD LINE L1 -583 5659 5358 7 1107 21 36 0 0 chr1 68503079 68503107 -128692325 + AT_rich Low_complexity Low_complexity 1 28 0 8 1107 456 19 0 0 chr1 68503176 68503229 -128692203 + (TA)n Simple_repeat Simple_repeat 1 53 0 9 1107 324 0 0 0 chr1 68503685 68503721 -128691711 + (CATCT)n Simple_repeat Simple_repeat 3 38 0 1 1107 1393 195 93 11 chr1 68504199 68504552 -128690880 + ORR1C2 LTR MaLR 3 384 0 1 1107 21 36 0 0 chr1 68504612 68504640 -128690792 + AT_rich Low_complexity Low_complexity 1 28 0 1 1107 22 0 0 0 chr1 68504666 68504688 -128690744 + AT_rich Low_complexity Low_complexity 1 22 0 1 1107 441 0 0 0 chr1 68506680 68506729 -128688703 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1107 506 298 54 132 chr1 68506882 68507215 -128688217 + Lx8 LINE L1 6948 7254 -219 1 1107 232 71 0 0 chr1 68507224 68507260 -128688172 + B1_Mur4 SINE Alu 65 100 -20 1 1107 938 76 0 8 chr1 68507274 68507407 -128688025 + (GGAA)n Simple_repeat Simple_repeat 2 133 0 1 1107 413 348 7 41 chr1 68507840 68507987 -128687445 - RSINE1 SINE B4 0 165 24 1 1107 200 35 35 0 chr1 68508281 68508310 -128687122 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1107 718 251 104 0 chr1 68508311 68508474 -128686958 - B3 SINE B2 -32 184 5 2 1107 374 291 124 21 chr1 68508478 68508664 -128686768 + Lx8 LINE L1 6242 6446 -1027 2 1107 700 205 133 56 chr1 68508682 68508878 -128686554 - RMER17B LTR ERVK 0 958 748 2 1107 1685 106 20 0 chr1 68508880 68509135 -128686297 - RMER17B LTR ERVK -698 260 1 2 1107 377 133 13 0 chr1 68509135 68509210 -128686222 + (CATA)n Simple_repeat Simple_repeat 1 76 0 2 1107 232 61 0 29 chr1 68509212 68509246 -128686186 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 2 1107 516 233 17 0 chr1 68509300 68509472 -128685960 + (TA)n Simple_repeat Simple_repeat 1 175 0 2 1107 26 0 0 0 chr1 68510171 68510197 -128685235 + AT_rich Low_complexity Low_complexity 1 26 0 2 1107 317 192 0 0 chr1 68511142 68511215 -128684217 + Lx9 LINE L1 7572 7644 0 2 1107 320 323 21 31 chr1 68511319 68511332 -128684100 - RSINE1 SINE B4 -69 96 86 2 1107 1032 156 0 0 chr1 68511332 68511512 -128683920 + CT-rich Low_complexity Low_complexity 1 180 0 3 1107 320 323 21 31 chr1 68511512 68511594 -128683838 - RSINE1 SINE B4 -80 85 2 2 1107 330 316 34 34 chr1 68512232 68512350 -128683082 + B3A SINE B2 1 118 -80 3 1107 810 290 117 0 chr1 68513070 68513353 -128682079 + MTEa LTR MaLR 3 318 -61 3 1107 306 365 76 25 chr1 68513708 68513905 -128681527 + L2 LINE L2 2842 3048 -371 3 1107 25 51 0 0 chr1 68514413 68514452 -128680980 + AT_rich Low_complexity Low_complexity 1 39 0 3 1107 389 258 120 8 chr1 68514472 68514597 -128680835 - Lx6 LINE L1 -17 7443 7305 3 1107 38 39 0 0 chr1 68514687 68514739 -128680693 + AT_rich Low_complexity Low_complexity 1 52 0 3 1107 312 321 204 0 chr1 68514774 68514911 -128680521 + RSINE1 SINE B4 1 165 0 3 1107 189 147 0 0 chr1 68514924 68514958 -128680474 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 1107 27 62 0 0 chr1 68515333 68515381 -128680051 + AT_rich Low_complexity Low_complexity 1 48 0 3 1107 37796 17 1 7 chr1 68515532 68521101 -128674331 + L1Md_A LINE L1 53 5586 -297 4 1107 8748 17 0 0 chr1 68521101 68522133 -128673299 + L1Md_A LINE L1 5587 6582 0 4 1107 474 196 32 11 chr1 68522221 68522314 -128673118 - ORR1D1 LTR MaLR -4 370 276 4 1107 675 31 31 0 chr1 68522633 68522731 -128672701 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 4 1107 419 385 43 0 chr1 68522746 68522933 -128672499 - ID_B1 SINE B4 -26 198 4 4 1107 21 57 0 0 chr1 68523106 68523141 -128672291 + AT_rich Low_complexity Low_complexity 1 35 0 4 1107 27 29 0 0 chr1 68523859 68523893 -128671539 + AT_rich Low_complexity Low_complexity 1 34 0 4 1107 300 53 0 0 chr1 68524530 68524568 -128670864 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1107 3395 100 15 19 chr1 68526495 68527013 -128668419 + RMER2 LTR ERV1 1 516 -51 4 1107 2426 200 40 62 chr1 68527649 68527741 -128667691 + L1VL1 LINE L1 189 271 -6151 4 1107 215 21 0 96 chr1 68527741 68527793 -128667639 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1107 1036 97 7 0 chr1 68527795 68527940 -128667492 - B1_Mus1 SINE Alu 0 148 3 5 1107 2426 200 40 62 chr1 68527940 68528420 -128667012 + L1VL1 LINE L1 272 751 -5671 4 1107 26869 130 24 1 chr1 68528420 68533481 -128661951 + L1_Mus3 LINE L1 1459 6632 -6 5 1107 31 26 0 0 chr1 68533481 68533519 -128661913 + AT_rich Low_complexity Low_complexity 1 38 0 5 1107 269 31 0 0 chr1 68533591 68533623 -128661809 - L1_Mus3 LINE L1 -618 6020 5989 5 1107 24 32 0 0 chr1 68535697 68535728 -128659704 + AT_rich Low_complexity Low_complexity 1 31 0 5 1107 329 347 52 52 chr1 68536796 68536951 -128658481 + B3 SINE B2 25 179 -37 5 1107 262 107 36 0 chr1 68537693 68537749 -128657683 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 1107 225 0 0 0 chr1 68540304 68540329 -128655103 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1107 5206 63 0 3 chr1 68541001 68541668 -128653764 + L1Md_T LINE L1 5918 6582 0 5 1107 264 122 0 0 chr1 68542013 68542054 -128653378 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 5 1107 21 57 0 0 chr1 68542799 68542834 -128652598 + AT_rich Low_complexity Low_complexity 1 35 0 6 1107 270 0 0 0 chr1 68542903 68542933 -128652499 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1107 198 0 0 0 chr1 68542955 68542977 -128652455 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1107 231 193 35 0 chr1 68543127 68543184 -128652248 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1107 241 297 99 0 chr1 68543226 68543327 -128652105 - Charlie9 DNA MER1_type -2641 116 6 6 1107 393 270 71 35 chr1 68543725 68543894 -128651538 + MLT1J1 LTR MaLR 28 202 -242 6 1107 3371 218 108 34 chr1 68544113 68544947 -128650485 - RMER1A Other Other -8 1022 127 6 1107 210 37 0 0 chr1 68544972 68544999 -128650433 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1107 210 37 0 0 chr1 68545759 68545786 -128649646 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1107 1152 68 0 13 chr1 68545790 68545940 -128649492 - B1_Mus1 SINE Alu 0 148 1 6 1107 497 272 0 20 chr1 68546896 68547046 -128648386 + Lx7 LINE L1 7549 7695 -1 7 1107 2373 249 37 20 chr1 68548962 68549555 -128645877 + Lx6 LINE L1 6605 7207 -253 7 1107 541 65 21 21 chr1 68550163 68550258 -128645174 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 7 1107 207 0 0 0 chr1 68550260 68550283 -128645149 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1108 614 58 11 0 chr1 68551240 68551327 -128644105 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1108 480 18 0 0 chr1 68551885 68551942 -128643490 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1108 346 318 58 0 chr1 68552399 68552553 -128642879 + RSINE1 SINE B4 3 165 0 7 1108 2061 72 11 4 chr1 68553041 68553321 -128642111 + L1_Mus1 LINE L1 6285 6566 -1 7 1108 214 365 0 0 chr1 68553334 68553397 -128642035 - ID4 SINE ID -18 65 3 7 1108 3284 56 0 29 chr1 68553410 68553852 -128641580 - L1Md_F2 LINE L1 -12 6570 6142 7 1108 518 234 38 23 chr1 68554433 68554564 -128640868 + B1_Mus2 SINE Alu 7 139 -8 8 1108 216 200 0 0 chr1 68554581 68554626 -128640806 + GA-rich Low_complexity Low_complexity 4 48 0 8 1108 298 159 0 0 chr1 68554626 68554670 -128640762 + polypurine Low_complexity Low_complexity 65 108 0 8 1108 400 48 16 16 chr1 68555037 68555101 -128640331 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 8 1108 600 14 0 0 chr1 68555611 68555680 -128639752 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1108 229 331 54 34 chr1 68556286 68556433 -128638999 + MLT1J1 LTR MaLR 68 217 -227 8 1108 22 35 0 0 chr1 68558410 68558439 -128636993 + AT_rich Low_complexity Low_complexity 1 29 0 8 1108 261 83 0 0 chr1 68558454 68558490 -128636942 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1108 389 318 52 32 chr1 68559480 68559730 -128635702 + Lx9 LINE L1 7066 7320 -324 8 1108 23 33 0 0 chr1 68559853 68559883 -128635549 + AT_rich Low_complexity Low_complexity 1 30 0 8 1108 21 71 0 0 chr1 68559907 68559949 -128635483 + AT_rich Low_complexity Low_complexity 1 42 0 9 1108 8206 33 3 1 chr1 68560014 68560997 -128634435 + L1Md_F3 LINE L1 5600 6584 0 9 1108 183 321 111 0 chr1 68562451 68562532 -128632900 - MIR SINE MIR -126 136 47 9 1108 614 275 126 33 chr1 68562591 68562805 -128632627 + B4A SINE B4 3 236 -56 9 1108 8684 15 0 1 chr1 68565550 68566756 -128628676 - L1Md_A LINE L1 0 6582 5378 9 1108 540 97 0 11 chr1 68566757 68566851 -128628581 - L1Md_F2 LINE L1 -19 6563 6471 9 1108 216 0 0 0 chr1 68567079 68567103 -128628329 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 1108 2706 70 6 25 chr1 68568100 68568466 -128626966 + RLTR10D LTR ERVK 1 359 0 9 1108 3142 151 34 8 chr1 68569368 68569895 -128625537 + Lx2B LINE L1 6456 6996 -4 9 1108 224 91 23 0 chr1 68570080 68570124 -128625308 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9 1108 6419 69 0 11 chr1 68570584 68571435 -128623997 - L1Md_F2 LINE L1 -3 6579 5738 1 1108 4717 77 0 11 chr1 68571439 68572059 -128623373 - L1_Mus1 LINE L1 -1 6566 5954 1 1108 22 0 0 0 chr1 68572563 68572585 -128622847 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 1902 127 3 87 chr1 68574338 68574682 -128620750 - ORR1A3 LTR MaLR -4 322 8 1 1108 30 69 0 0 chr1 68575449 68575507 -128619925 + AT_rich Low_complexity Low_complexity 1 58 0 1 1108 326 350 29 14 chr1 68575736 68575875 -128619557 - MER97c DNA MER1_type? -709 381 241 1 1108 308 345 44 11 chr1 68576000 68576091 -128619341 + RSINE1 SINE B4 55 148 -17 1 1108 444 37 0 0 chr1 68576095 68576149 -128619283 + (CATA)n Simple_repeat Simple_repeat 1 54 0 1 1108 216 97 0 0 chr1 68576150 68576181 -128619251 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1 1108 232 274 93 8 chr1 68576974 68577092 -128618340 + Lx9 LINE L1 7346 7473 -171 1 1108 269 219 0 14 chr1 68577856 68577930 -128617502 + CT-rich Low_complexity Low_complexity 1 73 0 1 1108 495 33 0 0 chr1 68577937 68577998 -128617434 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1108 180 0 0 0 chr1 68579057 68579077 -128616355 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1108 36 40 0 0 chr1 68580008 68580058 -128615374 + AT_rich Low_complexity Low_complexity 1 50 0 1 1108 180 0 0 0 chr1 68580628 68580648 -128614784 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1108 229 191 21 0 chr1 68580807 68580854 -128614578 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1108 560 350 62 29 chr1 68580884 68580948 -128614484 - B4A SINE B4 -3 289 219 1 1108 375 119 0 0 chr1 68580948 68581015 -128614417 + (TTAG)n Simple_repeat Simple_repeat 2 68 0 1 1108 560 350 62 29 chr1 68581015 68581191 -128614241 - B4A SINE B4 -74 218 42 1 1108 872 300 44 41 chr1 68581195 68581557 -128613875 + ORR1D2 LTR MaLR 1 363 -7 1 1108 216 0 0 0 chr1 68582249 68582273 -128613159 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1108 26 50 0 0 chr1 68582771 68582811 -128612621 + AT_rich Low_complexity Low_complexity 1 40 0 1 1108 430 305 136 23 chr1 68583750 68584654 -128610778 + L1MA4 LINE L1 4918 5928 -372 1 1108 5079 103 63 0 chr1 68584695 68585443 -128609989 - L1_Mus3 LINE L1 -18 6620 5826 1 1108 2166 154 0 20 chr1 68585443 68585794 -128609638 + L1_Mus3 LINE L1 5506 5849 -34 1 1108 995 111 21 0 chr1 68587234 68587378 -128608054 - B1_Mus1 SINE Alu 0 148 2 1 1108 1701 90 4 9 chr1 68587491 68587790 -128607642 + Lx LINE L1 5711 6090 -564 1 1108 1763 110 39 3 chr1 68587806 68588088 -128607344 + L1_Mus4 LINE L1 6342 6633 -3 1 1108 408 315 173 73 chr1 68588208 68588468 -128606964 + B4 SINE B4 5 290 -2 1 1108 423 83 0 0 chr1 68588492 68588552 -128606880 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1108 822 106 0 0 chr1 68588552 68588674 -128606758 + (GA)n Simple_repeat Simple_repeat 2 124 0 1 1108 210 228 35 17 chr1 68588675 68588733 -128606699 + GA-rich Low_complexity Low_complexity 3 61 0 1 1108 218 165 84 42 chr1 68588711 68588806 -128606626 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 1 1108 300 296 76 32 chr1 68589608 68589767 -128605665 - Lx8 LINE L1 -712 6932 6624 1 1108 4724 54 0 0 chr1 68591003 68591591 -128603841 - L1_Mus1 LINE L1 0 6567 5980 1 1108 481 340 81 68 chr1 68591700 68592072 -128603360 - MTE2a LTR MaLR 0 379 16 1 1108 263 176 0 0 chr1 68592072 68592123 -128603309 - Lx4A LINE L1 -635 6423 6373 1 1108 19116 73 17 4 chr1 68592115 68594712 -128600720 + L1Md_F2 LINE L1 2957 5586 -297 1 1108 7456 76 3 10 chr1 68594712 68595713 -128599719 + L1Md_F2 LINE L1 5587 6580 -2 1 1108 39 22 0 0 chr1 68595970 68596016 -128599416 + AT_rich Low_complexity Low_complexity 1 46 0 1 1108 544 337 31 16 chr1 68596022 68596171 -128599261 - B3 SINE B2 -17 199 47 1 1108 261 0 0 0 chr1 68596171 68596200 -128599232 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1108 544 337 31 16 chr1 68596200 68596243 -128599189 - B3 SINE B2 -170 46 4 1 1108 303 299 90 12 chr1 68596493 68596659 -128598773 - MER3 DNA MER1_type -22 187 9 1 1108 238 286 154 47 chr1 68597925 68598094 -128597338 - LTR84b LTR ERVL -431 330 144 1 1108 464 325 39 5 chr1 68598288 68598495 -128596937 - B3 SINE B2 -2 214 1 1 1108 22 0 0 0 chr1 68600180 68600202 -128595230 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 240 0 75 0 chr1 68601050 68601090 -128594342 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1108 903 328 23 48 chr1 68601146 68601515 -128593917 - MTE2a LTR MaLR 0 419 51 1 1108 245 73 0 0 chr1 68601584 68601625 -128593807 - L1_Mus2 LINE L1 -1 6565 6525 1 1108 572 316 60 5 chr1 68601906 68602122 -128593310 - B4 SINE B4 -59 233 6 1 1108 4206 255 22 7 chr1 68602254 68603278 -128592154 + Lx5 LINE L1 5991 7047 -3 1 1108 24 67 0 0 chr1 68604838 68604883 -128590549 + AT_rich Low_complexity Low_complexity 1 45 0 1 1108 699 164 0 0 chr1 68604898 68605014 -128590418 + Lx3C LINE L1 6104 6219 -757 1 1108 2982 176 9 59 chr1 68605014 68605674 -128589758 + Lx3C LINE L1 6349 6975 -1 1 1108 5909 176 22 9 chr1 68608330 68609491 -128585941 + Lx3C LINE L1 4103 5278 -599 1 1108 1042 130 0 45 chr1 68609489 68609666 -128585766 + Lx3C LINE L1 5869 6037 -939 1 1108 1840 209 108 23 chr1 68609654 68610170 -128585262 + Lx4B LINE L1 6499 7058 0 1 1108 3038 38 3 0 chr1 68610229 68610594 -128584838 + L1Md_F2 LINE L1 6205 6570 -12 1 1108 201 74 0 0 chr1 68610695 68610722 -128584710 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1108 808 57 0 0 chr1 68610723 68610829 -128584603 - B1_Mus1 SINE Alu -19 129 24 1 1108 189 283 136 40 chr1 68611222 68611347 -128584085 + MIRb SINE MIR 46 182 -86 1 1108 230 183 33 0 chr1 68612288 68612348 -128583084 + CT-rich Low_complexity Low_complexity 3 64 0 1 1108 1118 94 6 0 chr1 68612355 68612525 -128582907 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1 1108 743 297 101 34 chr1 68613678 68614065 -128581367 + MER57C2 LTR ERV1 8 420 -14 1 1108 25 95 0 0 chr1 68614234 68614308 -128581124 + AT_rich Low_complexity Low_complexity 1 74 0 1 1108 3135 116 36 18 chr1 68614499 68614998 -128580434 - Lx LINE L1 -6 6648 6141 1 1108 6164 149 48 6 chr1 68615024 68616352 -128579080 - Lx LINE L1 -2 6652 5280 1 1108 2697 37 0 6 chr1 68616352 68616682 -128578750 - L1Md_F3 LINE L1 -14 6570 6243 1 1108 5279 50 3 0 chr1 68616682 68617388 -128578044 + L1Md_F3 LINE L1 5537 6244 -340 1 1108 4474 131 43 63 chr1 68617386 68618515 -128576917 - Lx LINE L1 -581 5296 4306 1 1108 250 257 69 95 chr1 68618694 68618810 -128576622 + MLT1B LTR MaLR 209 321 -69 1 1108 205 340 65 9 chr1 68618845 68618952 -128576480 + MIR SINE MIR 91 203 -59 1 1108 241 368 21 7 chr1 68618959 68619104 -128576328 + MLT1A1 LTR MaLR 5 151 -257 1 1108 565 357 21 31 chr1 68619425 68619616 -128575816 + B3 SINE B2 14 202 -14 1 1108 297 0 0 0 chr1 68619617 68619650 -128575782 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1108 351 359 71 54 chr1 68619767 68619994 -128575438 - ORR1E LTR MaLR 0 359 128 1 1108 3162 72 13 55 chr1 68619994 68620452 -128574980 + L1_Mus2 LINE L1 6124 6562 -4 1 1108 603 0 0 0 chr1 68620452 68620519 -128574913 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1108 351 359 71 54 chr1 68620519 68620643 -128574789 - ORR1E LTR MaLR -232 127 2 1 1108 22 35 0 0 chr1 68621335 68621364 -128574068 + AT_rich Low_complexity Low_complexity 1 29 0 1 1108 824 46 9 0 chr1 68621759 68621868 -128573564 + (CATAT)n Simple_repeat Simple_repeat 5 114 0 1 1108 7423 97 6 1 chr1 68622054 68623113 -128572319 - L1_Mm LINE L1 -772 5111 4048 1 1108 232 287 33 50 chr1 68623363 68623484 -128571948 + L1MC5 LINE L1 6765 6883 -1078 1 1108 1915 167 76 11 chr1 68623979 68624406 -128571026 + MTC-int LTR MaLR 216 950 -308 1 1108 287 382 24 68 chr1 68624679 68624884 -128570548 + MER20 DNA MER1_type 24 219 0 1 1108 353 306 39 45 chr1 68625176 68625330 -128570102 - HAL1-3A_ME LINE L1 -422 2436 2284 1 1108 652 204 42 106 chr1 68625709 68625945 -128569487 + RMER1C Other Other 1082 1302 -40 1 1108 21 82 0 0 chr1 68627102 68627151 -128568281 + AT_rich Low_complexity Low_complexity 1 49 0 1 1108 2017 90 14 3 chr1 68627977 68628266 -128567166 + L1_Mus2 LINE L1 6275 6566 0 1 1108 195 69 0 0 chr1 68629039 68629068 -128566364 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1108 649 107 10 10 chr1 68629136 68629240 -128566192 + RLTR31B_Mm LTR ERVK 1 104 -453 1 1108 236 192 12 48 chr1 68629242 68629313 -128566119 + B1_Mur3 SINE Alu 80 144 -3 1 1108 216 0 0 0 chr1 68629486 68629510 -128565922 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1108 38015 46 0 3 chr1 68629609 68636265 -128559167 - L1Md_T LINE L1 0 6585 1 1 1108 2365 134 50 43 chr1 68636581 68637024 -128558408 + RLTR11B LTR ERVK 1 446 -7 1 1108 395 314 99 44 chr1 68637092 68637575 -128557857 + Lx8 LINE L1 6931 7463 -10 1 1108 210 357 48 48 chr1 68638614 68638717 -128556715 + PB1D10 SINE Alu 1 103 -14 1 1108 23 0 0 0 chr1 68638788 68638811 -128556621 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 332 200 0 9 chr1 68639924 68640040 -128555392 + GA-rich Low_complexity Low_complexity 2 116 0 1 1108 469 15 0 120 chr1 68640286 68640361 -128555071 - B1_Mm SINE Alu -1 146 81 1 1108 1017 323 68 42 chr1 68640545 68640930 -128554502 + Lx7 LINE L1 6574 6973 -723 1 1108 3981 47 2 19 chr1 68640930 68641449 -128553983 + L1Md_F2 LINE L1 6072 6581 -1 1 1108 1017 323 68 42 chr1 68641449 68641706 -128553726 + Lx7 LINE L1 6974 7233 -463 1 1108 22 94 0 0 chr1 68641840 68641904 -128553528 + AT_rich Low_complexity Low_complexity 1 64 0 1 1108 668 140 13 32 chr1 68641907 68642062 -128553370 + (TATG)n Simple_repeat Simple_repeat 3 154 0 1 1108 21 57 0 0 chr1 68642520 68642555 -128552877 + AT_rich Low_complexity Low_complexity 1 35 0 1 1108 210 167 21 0 chr1 68644292 68644311 -128551121 + (TA)n Simple_repeat Simple_repeat 1 19 0 1 1108 477 90 0 0 chr1 68644311 68644378 -128551054 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1108 210 167 21 0 chr1 68644378 68644406 -128551026 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1108 35311 49 1 3 chr1 68644845 68650440 -128544992 + L1Md_T LINE L1 1 5589 -297 2 1108 8482 30 0 0 chr1 68650440 68651436 -128543996 + L1Md_T LINE L1 5590 6585 0 2 1108 615 299 136 50 chr1 68651788 68652312 -128543120 - Charlie7 DNA MER1_type -1824 788 220 2 1108 453 265 253 0 chr1 68652502 68652664 -128542768 - ID_B1 SINE B4 -20 204 2 2 1108 396 59 0 0 chr1 68653629 68653680 -128541752 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1108 314 339 22 42 chr1 68655045 68655216 -128540216 - MLT1A0 LTR MaLR 0 408 198 2 1108 359 320 31 8 chr1 68655365 68655494 -128539938 + MLT1C LTR MaLR 336 467 0 2 1108 22 0 0 0 chr1 68656553 68656575 -128538857 + AT_rich Low_complexity Low_complexity 1 22 0 2 1108 384 259 0 0 chr1 68657216 68657324 -128538108 + T-rich Low_complexity Low_complexity 1 108 0 2 1108 3068 29 74 20 chr1 68657325 68657715 -128537717 + IAPLTR2a LTR ERVK 1 411 0 2 1108 1065 99 25 85 chr1 68657716 68657915 -128537517 + IAPEz-int LTR ERVK 9 195 -6286 2 1108 236 302 0 0 chr1 68657915 68657968 -128537464 + RLTR27 LTR ERVK 223 275 -34 2 1108 3640 50 4 16 chr1 68657968 68658546 -128536886 + IAPEz-int LTR ERVK 168 662 -5819 2 1108 2728 56 0 3 chr1 68658546 68658889 -128536543 + IAPEz-int LTR ERVK 1359 1700 -4781 2 1108 6737 41 2 17 chr1 68658884 68659723 -128535709 + IAPEz-int LTR ERVK 5653 6479 -2 2 1108 3053 29 74 20 chr1 68659725 68660115 -128535317 + IAPLTR2a LTR ERVK 1 411 0 2 1108 747 0 0 0 chr1 68660115 68660198 -128535234 + (TTTTC)n Simple_repeat Simple_repeat 4 86 0 2 1108 4034 96 87 28 chr1 68660199 68660878 -128534554 - Lx LINE L1 -7 6647 5929 2 1108 352 230 53 1 chr1 68661271 68661393 -128534039 + Lx3A LINE L1 6870 7009 0 2 1108 351 311 172 25 chr1 68662283 68662405 -128533027 + ID_B1 SINE B4 83 222 -2 2 1108 250 185 9 53 chr1 68663603 68663717 -128531715 + GA-rich Low_complexity Low_complexity 4 112 0 2 1108 201 121 0 0 chr1 68663758 68663791 -128531641 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 2 1108 677 146 57 0 chr1 68663848 68664002 -128531430 + Lx2 LINE L1 6871 6996 -1 2 1108 26 50 0 0 chr1 68664763 68664803 -128530629 + AT_rich Low_complexity Low_complexity 1 40 0 2 1108 746 266 39 19 chr1 68665902 68666109 -128529323 - B3 SINE B2 -5 211 1 2 1108 1049 179 0 6 chr1 68667056 68667236 -128528196 + B2_Mm2 SINE B2 10 188 -7 2 1108 548 194 54 34 chr1 68667780 68667929 -128527503 - RMER1C Other Other -8 1334 1183 2 1108 21 0 0 0 chr1 68668238 68668259 -128527173 + AT_rich Low_complexity Low_complexity 1 21 0 2 1108 21 0 0 0 chr1 68669011 68669032 -128526400 + AT_rich Low_complexity Low_complexity 1 21 0 2 1108 25 31 0 0 chr1 68669049 68669081 -128526351 + AT_rich Low_complexity Low_complexity 1 32 0 2 1108 303 272 32 21 chr1 68669178 68669272 -128526160 - HAL1-3A_ME LINE L1 -789 2069 1975 2 1108 267 310 89 12 chr1 68669358 68669459 -128525973 - B4 SINE B4 -184 108 2 2 1108 1500 134 0 0 chr1 68670311 68670543 -128524889 - Lx2 LINE L1 0 6997 6766 2 1108 1174 138 0 0 chr1 68670533 68670700 -128524732 - Lx2 LINE L1 -352 6645 6479 2 1108 545 296 128 20 chr1 68670701 68670899 -128524533 + L1_Rod LINE L1 5323 5547 -300 2 1108 656 241 28 7 chr1 68670899 68671041 -128524391 + B1_Mus1 SINE Alu 3 147 -1 2 1108 545 296 128 20 chr1 68671041 68671239 -128524193 + L1_Rod LINE L1 5548 5762 -85 2 1108 212 0 36 0 chr1 68671443 68671471 -128523961 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1108 35516 50 0 3 chr1 68671486 68677084 -128518348 + L1Md_T LINE L1 1 5589 -297 2 1108 8364 35 0 0 chr1 68677084 68678080 -128517352 + L1Md_T LINE L1 5590 6585 0 2 1108 242 50 6 0 chr1 68679867 68679907 -128515525 - L1M5 LINE L1 -434 5739 5699 2 1108 727 234 7 0 chr1 68680027 68680168 -128515264 - B1_Mur3 SINE Alu -1 148 7 2 1108 468 0 0 0 chr1 68680687 68680739 -128514693 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1108 450 49 0 0 chr1 68680967 68681028 -128514404 + (TTAG)n Simple_repeat Simple_repeat 3 63 0 2 1109 22 35 0 0 chr1 68682094 68682123 -128513309 + AT_rich Low_complexity Low_complexity 1 29 0 2 1109 2539 111 5 29 chr1 68683902 68684321 -128511111 - RLTR9E LTR ERVK 0 409 1 2 1109 222 197 48 145 chr1 68684323 68684406 -128511026 - B1F SINE Alu -15 134 60 2 1109 350 290 16 18 chr1 68684743 68684859 -128510573 - PB1D10 SINE Alu -5 115 1 2 1109 861 81 0 0 chr1 68685857 68685993 -128509439 + (TTTTC)n Simple_repeat Simple_repeat 2 137 0 2 1109 351 318 98 29 chr1 68686276 68686718 -128508714 + L1M2 LINE L1 4988 5472 -828 2 1109 362 155 17 0 chr1 68686865 68686923 -128508509 + HAL1-3A_ME LINE L1 1976 2034 -824 2 1109 369 353 36 29 chr1 68687131 68687271 -128508161 + B3A SINE B2 3 143 -55 2 1109 423 0 0 0 chr1 68687292 68687339 -128508093 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1109 198 0 0 0 chr1 68687502 68687524 -128507908 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1109 275 323 0 31 chr1 68687554 68687650 -128507782 + MLT1D LTR MaLR 402 494 -11 2 1109 21 71 0 0 chr1 68688048 68688090 -128507342 + AT_rich Low_complexity Low_complexity 1 42 0 2 1109 428 229 8 0 chr1 68688116 68688213 -128507219 - B3 SINE B2 -91 102 2 2 1109 1689 190 68 0 chr1 68688326 68688695 -128506737 + ORR1B1 LTR MaLR 1 394 0 2 1109 312 235 11 23 chr1 68689371 68689458 -128505974 + MTE2a LTR MaLR 294 379 0 2 1109 670 210 34 20 chr1 68689541 68689687 -128505745 + B1_Mur2 SINE Alu 1 148 -1 2 1109 21 36 0 0 chr1 68689720 68689748 -128505684 + AT_rich Low_complexity Low_complexity 1 28 0 2 1109 25 0 0 0 chr1 68689755 68689780 -128505652 + AT_rich Low_complexity Low_complexity 1 25 0 2 1109 353 318 29 82 chr1 68689922 68690128 -128505304 - MER2 DNA MER2_type -61 284 90 2 1109 252 59 0 0 chr1 68690344 68690378 -128505054 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 2 1109 180 77 0 0 chr1 68690922 68690948 -128504484 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1109 5780 44 0 6 chr1 68693303 68694010 -128501422 - L1Md_F3 LINE L1 -2 6582 5880 2 1109 6195 49 1 0 chr1 68694010 68694772 -128500660 + L1_Mm LINE L1 4859 5621 -262 2 1109 314 204 6 61 chr1 68694821 68694941 -128500491 - Lx7 LINE L1 0 7696 7597 2 1109 21 0 0 0 chr1 68696045 68696066 -128499366 + AT_rich Low_complexity Low_complexity 1 21 0 2 1109 516 16 0 0 chr1 68697536 68697597 -128497835 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1109 405 0 0 0 chr1 68697598 68697643 -128497789 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1109 450 0 0 0 chr1 68699618 68699668 -128495764 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1109 253 331 102 0 chr1 68699874 68700001 -128495431 - Lx8 LINE L1 -302 7171 7032 2 1109 395 300 75 86 chr1 68700132 68700424 -128495008 - Charlie13a DNA Charlie -715 799 511 2 1109 1068 88 0 13 chr1 68701970 68702119 -128493313 - B1_Mus2 SINE Alu 0 147 1 2 1109 28 29 0 0 chr1 68702366 68702401 -128493031 + AT_rich Low_complexity Low_complexity 1 35 0 2 1109 305 140 18 0 chr1 68702431 68702488 -128492944 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1109 500 303 124 0 chr1 68702525 68702670 -128492762 + B4A SINE B4 2 164 -128 2 1109 1686 323 91 53 chr1 68702884 68703960 -128491472 + Lx8 LINE L1 6182 7298 -175 2 1109 21 36 0 0 chr1 68705305 68705333 -128490099 + AT_rich Low_complexity Low_complexity 1 28 0 2 1109 525 348 14 0 chr1 68705743 68705884 -128489548 + RSINE1 SINE B4 4 146 -19 2 1109 640 250 14 0 chr1 68706005 68706149 -128489283 + B1_Mur4 SINE Alu 5 150 0 2 1109 185 35 69 0 chr1 68706360 68706389 -128489043 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1109 294 310 12 12 chr1 68707069 68707154 -128488278 + MIRm SINE MIR 70 154 -122 2 1109 26 74 0 0 chr1 68707298 68707352 -128488080 + AT_rich Low_complexity Low_complexity 1 54 0 2 1109 1118 76 7 0 chr1 68709292 68709436 -128485996 + B1_Mm SINE Alu 1 145 -2 2 1109 678 25 0 0 chr1 68709436 68709516 -128485916 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 2 1109 429 287 54 24 chr1 68711201 68711369 -128484063 - MIRb SINE MIR 0 268 96 2 1109 235 300 98 18 chr1 68712668 68712780 -128482652 + MIR SINE MIR 4 124 -138 2 1109 315 105 0 0 chr1 68713316 68713373 -128482059 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1109 180 184 0 0 chr1 68714330 68714379 -128481053 + CT-rich Low_complexity Low_complexity 2 50 0 2 1109 271 274 9 54 chr1 68715673 68715785 -128479647 + BC1_Mm scRNA scRNA 9 115 -37 2 1109 1688 195 124 14 chr1 68715924 68716351 -128479081 + Lx2B LINE L1 6524 6997 -3 2 1109 648 38 0 0 chr1 68716356 68716435 -128478997 + (GA)n Simple_repeat Simple_repeat 1 79 0 2 1109 287 354 35 17 chr1 68718319 68718434 -128476998 + PB1D10 SINE Alu 1 117 0 2 1109 26 50 0 0 chr1 68718894 68718934 -128476498 + AT_rich Low_complexity Low_complexity 1 40 0 2 1109 421 231 22 0 chr1 68719075 68719166 -128476266 + B1F2 SINE Alu 1 93 -56 2 1109 3355 81 5 0 chr1 68719166 68719612 -128475820 - L1_Mus2 LINE L1 -199 6367 5920 2 1109 237 230 49 86 chr1 68719681 68719762 -128475670 + Arthur1A DNA Tip100 31 108 -69 2 1109 1573 210 40 38 chr1 68720280 68720618 -128474814 - Lx7 LINE L1 -2 7694 7365 2 1109 396 0 0 0 chr1 68720618 68720662 -128474770 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 1109 1573 210 40 38 chr1 68720662 68720744 -128474688 - Lx7 LINE L1 -332 7364 7275 2 1109 560 244 74 16 chr1 68720988 68721230 -128474202 - L1MB3 LINE L1 -217 5966 5711 2 1109 616 382 98 41 chr1 68721255 68721896 -128473536 + MLT1E1A LTR MaLR 2 679 -1 2 1109 225 193 18 0 chr1 68722979 68723036 -128472396 - Lx9 LINE L1 -13 7631 7574 2 1109 1896 86 7 7 chr1 68724055 68724324 -128471108 - L1_Mus1 LINE L1 -1 6566 6298 2 1109 1187 34 0 14 chr1 68724335 68724483 -128470949 + B1_Mm SINE Alu 2 147 0 2 1109 2692 228 14 46 chr1 68724664 68725360 -128470072 - Lx3C LINE L1 -2 6974 6301 2 1109 986 238 146 111 chr1 68725728 68726243 -128469189 - MT2A LTR ERVL 0 533 1 2 1109 225 163 0 0 chr1 68726669 68726718 -128468714 + CT-rich Low_complexity Low_complexity 2 50 0 2 1109 378 0 0 0 chr1 68728570 68728612 -128466820 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1109 22 35 0 0 chr1 68730120 68730149 -128465283 + AT_rich Low_complexity Low_complexity 1 29 0 3 1109 640 277 122 58 chr1 68730466 68730795 -128464637 - Lx9 LINE L1 -164 7480 7131 3 1109 340 222 0 0 chr1 68731007 68731088 -128464344 + L1_Mur3 LINE L1 5786 5866 -14 3 1109 793 309 97 51 chr1 68731135 68731742 -128463690 + Lx9 LINE L1 7010 7644 0 3 1109 28 29 0 0 chr1 68731743 68731778 -128463654 + AT_rich Low_complexity Low_complexity 1 35 0 3 1109 228 246 0 0 chr1 68732046 68732107 -128463325 + A-rich Low_complexity Low_complexity 1 61 0 3 1109 262 269 0 0 chr1 68732304 68732371 -128463061 + GA-rich Low_complexity Low_complexity 1 67 0 3 1109 275 0 0 28 chr1 68732920 68732956 -128462476 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1109 445 285 154 41 chr1 68733033 68733545 -128461887 + L1M4 LINE L1 4343 4912 -1234 3 1109 22 56 0 0 chr1 68733683 68733719 -128461713 + AT_rich Low_complexity Low_complexity 1 36 0 3 1109 246 339 104 29 chr1 68734799 68734972 -128460460 - MIRb SINE MIR -15 253 68 3 1109 284 308 99 0 chr1 68735638 68735729 -128459703 - L2a LINE L2 -20 3406 3307 3 1109 2427 102 26 3 chr1 68737471 68737853 -128457579 + L1_Mus3 LINE L1 6244 6634 -4 3 1109 420 169 0 0 chr1 68738587 68738664 -128456768 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1109 527 81 0 11 chr1 68738685 68738772 -128456660 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1109 21 36 0 0 chr1 68739722 68739750 -128455682 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 640 289 76 15 chr1 68739928 68740125 -128455307 + B3 SINE B2 8 216 0 3 1109 846 78 0 0 chr1 68740601 68740716 -128454716 + (TCCC)n Simple_repeat Simple_repeat 3 117 0 3 1109 265 190 20 0 chr1 68740718 68740818 -128454614 + CT-rich Low_complexity Low_complexity 1 102 0 3 1109 34 93 0 0 chr1 68742310 68742407 -128453025 + AT_rich Low_complexity Low_complexity 1 97 0 3 1109 21 36 0 0 chr1 68743036 68743064 -128452368 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 1283 85 21 26 chr1 68743465 68743658 -128451774 + B2_Mm2 SINE B2 2 193 -2 3 1109 24 0 0 0 chr1 68744375 68744399 -128451033 + AT_rich Low_complexity Low_complexity 1 24 0 3 1109 3847 128 24 3 chr1 68746175 68746793 -128448639 + Lx3A LINE L1 6341 6971 -10 3 1109 696 24 0 0 chr1 68746793 68746875 -128448557 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 3 1109 812 277 64 28 chr1 68746886 68747243 -128448189 + Lx9 LINE L1 7149 7518 -126 3 1109 249 234 47 58 chr1 68747258 68747430 -128448002 + Lx9 LINE L1 7440 7609 -35 3 1109 26 50 0 0 chr1 68747450 68747490 -128447942 + AT_rich Low_complexity Low_complexity 1 40 0 3 1109 23 0 0 0 chr1 68748601 68748624 -128446808 + AT_rich Low_complexity Low_complexity 1 23 0 3 1109 8010 38 6 1 chr1 68748624 68749598 -128445834 - L1Md_F2 LINE L1 -17 6565 5587 3 1109 2453 21 0 0 chr1 68749613 68749903 -128445529 + L1_Mm LINE L1 5211 5500 -383 3 1109 40 59 0 0 chr1 68750690 68750758 -128444674 + AT_rich Low_complexity Low_complexity 1 68 0 3 1109 34 42 0 0 chr1 68750824 68750872 -128444560 + AT_rich Low_complexity Low_complexity 1 48 0 3 1109 272 27 27 0 chr1 68751578 68751615 -128443817 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1109 1261 239 104 15 chr1 68751625 68751961 -128443471 + ORR1C2 LTR MaLR 1 366 -18 3 1109 375 23 0 0 chr1 68752841 68752885 -128442547 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1109 210 271 81 16 chr1 68753391 68753466 -128441966 + L2b LINE L2 3309 3425 -1 3 1109 313 229 130 114 chr1 68753783 68753906 -128441526 + MIRb SINE MIR 90 214 -54 3 1109 807 11 0 0 chr1 68754127 68754219 -128441213 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1109 229 154 0 0 chr1 68754274 68754313 -128441119 - B4A SINE B4 -65 227 189 3 1109 282 125 0 0 chr1 68754313 68754361 -128441071 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1109 477 263 133 56 chr1 68754470 68754740 -128440692 + B4A SINE B4 2 292 0 3 1109 294 180 0 0 chr1 68754743 68754804 -128440628 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1109 227 246 112 52 chr1 68754988 68755104 -128440328 + L1M3 LINE L1 5417 5539 -629 3 1109 4476 35 2 4 chr1 68755122 68755669 -128439763 - L1Md_F2 LINE L1 -24 6558 6013 3 1109 217 131 16 16 chr1 68757565 68757627 -128437805 + (TTTG)n Simple_repeat Simple_repeat 1 62 0 3 1109 536 343 72 14 chr1 68757807 68758014 -128437418 + B4A SINE B4 1 219 -73 3 1109 831 288 146 6 chr1 68758419 68758741 -128436691 - MTD LTR MaLR -5 414 48 3 1109 3525 99 93 4 chr1 68759072 68759608 -128435824 + MT2B2 LTR ERVL 1 584 0 3 1109 387 252 21 0 chr1 68760585 68760706 -128434726 - Lx7 LINE L1 -2 7694 7585 3 1109 302 357 9 9 chr1 68761107 68761220 -128434212 - MIR SINE MIR -24 238 126 3 1109 2044 140 19 0 chr1 68761408 68761729 -128433703 + ORR1A2 LTR MaLR 1 327 0 3 1109 6682 151 4 4 chr1 68763493 68764729 -128430703 + Lx LINE L1 5416 6654 0 3 1109 1606 247 29 5 chr1 68765752 68766135 -128429297 + Lx6 LINE L1 7066 7457 -3 3 1109 717 132 0 0 chr1 68766870 68767014 -128428418 + (GA)n Simple_repeat Simple_repeat 1 144 0 3 1109 2266 64 7 0 chr1 68768090 68768388 -128427044 - L1_Mus1 LINE L1 -2 6565 6266 3 1109 508 98 0 0 chr1 68768510 68768592 -128426840 - L1Md_F2 LINE L1 0 6582 6501 3 1109 792 118 0 0 chr1 68769705 68769832 -128425600 + (TATG)n Simple_repeat Simple_repeat 2 128 0 3 1109 210 150 0 0 chr1 68770659 68770699 -128424733 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 1109 389 378 91 6 chr1 68770855 68771196 -128424236 - L3 LINE CR1 -150 4339 3970 3 1109 211 351 92 5 chr1 68771509 68771657 -128423775 + MIRc SINE MIR 29 190 -86 3 1109 180 77 0 0 chr1 68773095 68773121 -128422311 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1109 270 0 0 0 chr1 68773431 68773461 -128421971 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1109 334 248 110 11 chr1 68773464 68773599 -128421833 + MT2A LTR ERVL 410 561 -6 3 1109 483 87 0 0 chr1 68774229 68774298 -128421134 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1109 1150 245 103 30 chr1 68774527 68774953 -128420479 - Lx7 LINE L1 -1292 6404 5948 3 1109 264 279 15 0 chr1 68775403 68775471 -128419961 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1109 296 176 127 56 chr1 68776057 68776183 -128419249 + Lx9 LINE L1 7510 7644 0 3 1109 7515 177 23 10 chr1 68776638 68778135 -128417297 + Lx4B LINE L1 5532 7058 0 3 1109 27 0 0 0 chr1 68778613 68778640 -128416792 + AT_rich Low_complexity Low_complexity 1 27 0 3 1109 213 139 0 0 chr1 68778807 68778850 -128416582 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1109 441 156 0 0 chr1 68778867 68778944 -128416488 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 1109 210 178 65 22 chr1 68779066 68779112 -128416320 - B4 SINE B4 -199 93 46 3 1109 22 0 0 0 chr1 68779156 68779178 -128416254 + AT_rich Low_complexity Low_complexity 1 22 0 3 1109 288 0 0 0 chr1 68780020 68780052 -128415380 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1109 451 389 21 5 chr1 68780952 68781143 -128414289 + B4A SINE B4 8 201 -91 3 1109 203 203 46 15 chr1 68781205 68781270 -128414162 + (CATA)n Simple_repeat Simple_repeat 4 70 0 3 1109 2786 118 6 30 chr1 68781352 68781822 -128413610 - Lx LINE L1 -1 6653 6195 3 1109 491 243 101 7 chr1 68781832 68781981 -128413451 - MTC LTR MaLR -258 163 1 3 1109 2899 72 18 5 chr1 68782378 68782769 -128412663 + L1Md_F2 LINE L1 6175 6570 -12 3 1109 183 80 0 0 chr1 68782774 68782799 -128412633 + (CATA)n Simple_repeat Simple_repeat 2 26 0 3 1109 1091 77 7 7 chr1 68783037 68783180 -128412252 - B1_Mur3 SINE Alu -6 143 1 3 1109 23 33 0 0 chr1 68783293 68783323 -128412109 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 21 36 0 0 chr1 68783565 68783593 -128411839 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 342 371 82 44 chr1 68784246 68784358 -128411074 - ID_B1 SINE B4 -9 215 89 3 1109 450 0 0 0 chr1 68784358 68784408 -128411024 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1109 342 371 82 44 chr1 68784408 68784501 -128410931 - ID SINE ID -136 88 2 3 1109 1166 76 0 0 chr1 68784590 68784735 -128410697 + B1_Mm SINE Alu 2 146 -1 3 1109 200 125 0 24 chr1 68784735 68784776 -128410656 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1109 773 273 15 5 chr1 68785037 68785232 -128410200 + Lx5 LINE L1 6652 6848 -202 3 1109 2044 127 18 6 chr1 68785596 68785930 -128409502 + Lx3B LINE L1 6633 6970 -3 3 1109 25 0 0 0 chr1 68785931 68785956 -128409476 + AT_rich Low_complexity Low_complexity 1 25 0 3 1109 348 24 0 0 chr1 68787418 68787459 -128407973 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1109 390 250 44 59 chr1 68788788 68788924 -128406508 - B3A SINE B2 -35 163 30 3 1109 816 326 101 39 chr1 68789468 68790011 -128405421 - Lx8 LINE L1 -1 7472 6896 3 1109 506 295 13 32 chr1 68790078 68790232 -128405200 - B3A SINE B2 -45 153 3 3 1109 23 33 0 0 chr1 68790405 68790435 -128404997 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 22 0 0 0 chr1 68790786 68790808 -128404624 + AT_rich Low_complexity Low_complexity 1 22 0 3 1109 4085 157 43 5 chr1 68790829 68791566 -128403866 - Lx2 LINE L1 0 6997 6233 3 1109 1591 205 104 10 chr1 68791795 68792180 -128403252 - MTC LTR MaLR 0 421 1 3 1109 32 26 0 0 chr1 68792356 68792395 -128403037 + AT_rich Low_complexity Low_complexity 1 39 0 4 1109 722 243 58 19 chr1 68792395 68792601 -128402831 + B3 SINE B2 3 216 0 4 1109 29 28 0 0 chr1 68793668 68793704 -128401728 + AT_rich Low_complexity Low_complexity 1 36 0 4 1109 676 273 53 5 chr1 68793958 68794164 -128401268 + ID_B1 SINE B4 1 216 -8 4 1109 419 99 69 0 chr1 68794695 68794796 -128400636 + GA-rich Low_complexity Low_complexity 5 112 0 4 1109 570 113 0 0 chr1 68794837 68794943 -128400489 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 1109 363 60 0 0 chr1 68794943 68794993 -128400439 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1109 401 280 108 18 chr1 68795007 68795174 -128400258 - B3A SINE B2 -16 182 1 4 1109 504 218 63 54 chr1 68796270 68796493 -128398939 - Lx9 LINE L1 -1 7643 7419 4 1109 390 175 23 204 chr1 68796493 68796665 -128398767 - Lx9 LINE L1 -130 7514 7374 4 1109 507 33 0 0 chr1 68797468 68797529 -128397903 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1109 25 51 0 0 chr1 68797607 68797646 -128397786 + AT_rich Low_complexity Low_complexity 1 39 0 4 1109 335 307 29 14 chr1 68797908 68798047 -128397385 + Lx9 LINE L1 7307 7447 -197 4 1109 552 314 76 19 chr1 68798876 68799139 -128396293 + B4A SINE B4 2 279 -13 4 1109 300 143 0 0 chr1 68799223 68799279 -128396153 + (TTA)n Simple_repeat Simple_repeat 3 58 0 4 1109 2699 224 29 5 chr1 68799309 68800005 -128395427 + Lx2B LINE L1 6244 6974 -2 4 1109 23 0 0 0 chr1 68800005 68800028 -128395404 + AT_rich Low_complexity Low_complexity 1 23 0 4 1109 24 0 0 0 chr1 68800387 68800411 -128395021 + AT_rich Low_complexity Low_complexity 1 24 0 4 1109 540 0 0 0 chr1 68800831 68800891 -128394541 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1109 1443 219 29 0 chr1 68801005 68801315 -128394117 + RMER6C LTR ERVK 372 690 0 4 1109 215 287 123 47 chr1 68801634 68801740 -128393692 + L2a LINE L2 3313 3426 0 4 1109 189 0 0 0 chr1 68803048 68803069 -128392363 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1109 1318 87 22 0 chr1 68803550 68803735 -128391697 + B2_Mm2 SINE B2 1 189 -6 4 1109 285 128 0 0 chr1 68804154 68804201 -128391231 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 4 1109 785 177 61 6 chr1 68804743 68804908 -128390524 + Lx3B LINE L1 6797 6970 -3 4 1109 405 70 0 0 chr1 68804929 68804986 -128390446 + (TAA)n Simple_repeat Simple_repeat 1 57 0 4 1109 270 0 0 0 chr1 68805561 68805591 -128389841 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1109 193 153 55 14 chr1 68806826 68806899 -128388533 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1109 279 0 0 0 chr1 68806933 68806964 -128388468 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1109 23 54 0 0 chr1 68807236 68807273 -128388159 + AT_rich Low_complexity Low_complexity 1 37 0 4 1109 215 31 31 0 chr1 68807423 68807455 -128387977 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 4 1109 3893 108 3 5 chr1 68808216 68808784 -128386648 - Lx LINE L1 0 6654 6088 4 1109 514 266 101 22 chr1 68808793 68809020 -128386412 - MLT1C LTR MaLR -219 248 4 4 1109 211 150 74 12 chr1 68810453 68810534 -128384898 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 1109 244 244 58 11 chr1 68812442 68812529 -128382903 - MIRb SINE MIR 0 268 178 4 1110 339 274 37 0 chr1 68812805 68812890 -128382542 - B3A SINE B2 -83 112 27 4 1110 624 163 0 0 chr1 68812907 68813079 -128382353 + T-rich Low_complexity Low_complexity 3 174 0 4 1110 525 219 130 0 chr1 68813111 68813234 -128382198 - B1_Mur3 SINE Alu 0 149 11 4 1110 21 36 0 0 chr1 68813612 68813640 -128381792 + AT_rich Low_complexity Low_complexity 1 28 0 4 1110 3662 70 4 0 chr1 68813874 68814349 -128381083 - L1_Mus2 LINE L1 -297 6269 5793 4 1110 491 75 75 11 chr1 68814349 68814443 -128380989 + L1_Mus3 LINE L1 6520 6619 -19 4 1110 185 0 0 39 chr1 68814443 68814469 -128380963 + (TAA)n Simple_repeat Simple_repeat 3 27 0 4 1110 239 237 92 21 chr1 68814705 68814729 -128380703 + ORR1B1-int LTR MaLR 582 730 -776 4 1110 400 178 9 122 chr1 68814729 68814762 -128380670 + MT2B LTR ERVL 139 158 -443 4 1110 683 22 11 0 chr1 68814762 68814852 -128380580 + B1_Mus2 SINE Alu 2 92 -55 4 1110 666 0 0 0 chr1 68814900 68814974 -128380458 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1110 390 21 0 0 chr1 68814974 68815020 -128380412 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1110 459 0 0 0 chr1 68815319 68815370 -128380062 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1110 378 0 0 0 chr1 68815370 68815411 -128380021 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1110 288 0 0 0 chr1 68815411 68815442 -128379990 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1110 21 57 0 0 chr1 68816361 68816396 -128379036 + AT_rich Low_complexity Low_complexity 1 35 0 4 1110 255 387 16 0 chr1 68816554 68816678 -128378754 + MER5A DNA MER1_type 57 182 -7 4 1110 892 291 109 9 chr1 68816693 68817116 -128378316 + Charlie4a DNA MER1_type 1 465 -43 4 1110 1282 76 0 0 chr1 68817127 68817299 -128378133 + L1_Mus1 LINE L1 6396 6567 0 4 1110 504 32 0 0 chr1 68817347 68817409 -128378023 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1110 265 346 76 30 chr1 68817436 68817567 -128377865 + RSINE1 SINE B4 11 147 -18 4 1110 258 339 108 3 chr1 68818684 68818854 -128376578 - MIRb SINE MIR -54 214 24 4 1110 725 336 125 53 chr1 68819770 68820282 -128375150 + MLT1F1 LTR MaLR 13 561 -8 4 1110 207 0 0 0 chr1 68821226 68821249 -128374183 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1110 594 105 0 0 chr1 68821251 68821356 -128374076 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 1110 6310 225 98 43 chr1 68822525 68825162 -128370270 + Lx7 LINE L1 4793 7547 -149 4 1110 321 341 38 8 chr1 68825186 68825319 -128370113 + B4 SINE B4 113 249 -43 4 1110 465 299 13 26 chr1 68826071 68826222 -128369210 - B1F SINE Alu 0 149 1 4 1110 224 314 0 49 chr1 68826515 68826659 -128368773 + GA-rich Low_complexity Low_complexity 1 137 0 4 1110 254 278 101 20 chr1 68828212 68828311 -128367121 + MER33 DNA MER1_type 2 108 -216 4 1110 528 16 0 0 chr1 68828905 68828966 -128366466 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 4 1110 439 271 40 29 chr1 68829397 68829572 -128365860 - MER96B DNA hAT -240 177 1 4 1110 514 345 32 41 chr1 68830126 68830344 -128365088 + B3A SINE B2 1 216 0 4 1110 2844 42 40 45 chr1 68831605 68832003 -128363429 - MTA_Mm LTR MaLR 0 396 1 4 1110 1617 321 80 19 chr1 68832358 68833059 -128362373 - Lx8 LINE L1 -247 7226 6483 4 1110 1071 115 0 0 chr1 68833435 68833583 -128361849 - B1_Mus1 SINE Alu 0 148 1 4 1110 423 0 0 0 chr1 68833965 68834012 -128361420 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1110 614 219 0 23 chr1 68835052 68835183 -128360249 - B1_Mur2 SINE Alu 0 149 22 4 1110 343 390 0 7 chr1 68835431 68835568 -128359864 - RSINE1 SINE B4 -15 150 15 4 1110 549 0 0 0 chr1 68836343 68836404 -128359028 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1110 361 342 27 7 chr1 68836470 68836620 -128358812 + Lx8 LINE L1 7189 7341 -132 4 1110 923 111 163 0 chr1 68837460 68837613 -128357819 + B2_Mm2 SINE B2 2 179 -16 4 1110 690 13 0 0 chr1 68838323 68838402 -128357030 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1110 547 289 140 13 chr1 68839210 68839438 -128355994 + MLT1A LTR MaLR 89 345 -29 4 1110 4307 137 31 0 chr1 68839573 68840258 -128355174 - Lx3B LINE L1 -2 6971 6266 4 1110 22 0 0 0 chr1 68840883 68840905 -128354527 + AT_rich Low_complexity Low_complexity 1 22 0 4 1110 243 0 0 0 chr1 68841173 68841200 -128354232 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 4 1110 436 305 140 68 chr1 68842320 68842584 -128352848 - B4A SINE B4 -6 286 4 4 1110 631 257 152 82 chr1 68842650 68842993 -128352439 + MTEa LTR MaLR 1 367 -12 4 1110 183 333 56 87 chr1 68843301 68843462 -128351970 - MIRc SINE MIR -110 158 3 4 1110 540 0 0 0 chr1 68844246 68844306 -128351126 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1110 231 260 46 61 chr1 68844891 68845022 -128350410 + MER63D DNA AcHobo 274 402 -659 4 1110 21 0 0 0 chr1 68845689 68845710 -128349722 + AT_rich Low_complexity Low_complexity 1 21 0 4 1110 6826 38 1 1 chr1 68847321 68848148 -128347284 + L1Md_F2 LINE L1 5752 6578 -4 4 1110 22 0 0 0 chr1 68848520 68848542 -128346890 + AT_rich Low_complexity Low_complexity 1 22 0 4 1110 37 23 0 0 chr1 68854388 68854432 -128341000 + AT_rich Low_complexity Low_complexity 1 44 0 4 1110 22 0 0 0 chr1 68855805 68855827 -128339605 + AT_rich Low_complexity Low_complexity 1 22 0 4 1110 349 167 31 55 chr1 68857089 68857216 -128338216 + (TTAA)n Simple_repeat Simple_repeat 2 125 0 4 1110 431 295 135 36 chr1 68857513 68857794 -128337638 - L1MB3 LINE L1 -63 6120 5800 4 1110 22 35 0 0 chr1 68858038 68858067 -128337365 + AT_rich Low_complexity Low_complexity 1 29 0 4 1110 275 271 9 0 chr1 68858209 68858316 -128337116 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 1110 361 322 79 119 chr1 68858330 68858633 -128336799 + B4A SINE B4 1 291 -1 4 1110 223 288 0 0 chr1 68858659 68858718 -128336714 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1110 274 265 0 0 chr1 68858706 68858789 -128336643 + GA-rich Low_complexity Low_complexity 1 83 0 4 1110 2104 82 79 0 chr1 68859858 68860162 -128335270 - L1_Mus4 LINE L1 -5 6631 6304 4 1110 9813 108 5 2 chr1 68860175 68862364 -128333068 + L1_Mus2 LINE L1 4370 6565 -1 5 1110 380 20 20 0 chr1 68862467 68862516 -128332916 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1110 30 59 0 0 chr1 68863256 68863307 -128332125 + AT_rich Low_complexity Low_complexity 1 51 0 5 1110 183 389 56 0 chr1 68863568 68863694 -128331738 + L2b LINE L2 3028 3160 -215 5 1110 519 328 62 47 chr1 68864255 68864511 -128330921 + B4A SINE B4 11 270 -22 5 1110 504 105 0 0 chr1 68864512 68864588 -128330844 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1110 2435 60 54 0 chr1 68865132 68865447 -128329985 - IAPEY3_LTR LTR ERVK 0 332 1 5 1110 243 0 0 0 chr1 68866829 68866856 -128328576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1110 576 0 0 0 chr1 68867407 68867471 -128327961 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1110 387 0 0 0 chr1 68867471 68867513 -128327919 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1110 205 156 0 0 chr1 68869720 68869752 -128325680 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 5 1110 833 53 22 29 chr1 68872013 68872150 -128323282 + L1Md_F3 LINE L1 6448 6583 -1 5 1110 435 119 0 0 chr1 68872267 68872334 -128323098 + (TTAA)n Simple_repeat Simple_repeat 3 69 0 5 1110 1060 108 0 0 chr1 68872467 68872615 -128322817 + B1_Mus1 SINE Alu 1 148 0 5 1110 24 0 0 0 chr1 68872653 68872677 -128322755 + AT_rich Low_complexity Low_complexity 1 24 0 5 1110 3057 63 5 0 chr1 68874663 68875057 -128320375 + MTA_Mm LTR MaLR 1 396 0 5 1110 315 261 152 9 chr1 68875869 68875981 -128319451 + B1F1 SINE Alu 22 149 0 5 1110 254 143 20 0 chr1 68876027 68876076 -128319356 + GA-rich Low_complexity Low_complexity 4 53 0 5 1110 24 67 0 0 chr1 68876219 68876264 -128319168 + AT_rich Low_complexity Low_complexity 1 45 0 5 1110 533 72 0 12 chr1 68876362 68876446 -128318986 + (TTTA)n Simple_repeat Simple_repeat 4 86 0 5 1110 2294 201 89 4 chr1 68876448 68876952 -128318480 - Lx3C LINE L1 -18 6958 6412 5 1110 302 311 94 55 chr1 68877063 68877232 -128318200 + MLT1E LTR MaLR 95 273 -380 5 1110 541 274 67 27 chr1 68877232 68877382 -128318050 + RSINE1 SINE B4 2 157 -8 5 1110 827 297 129 9 chr1 68877428 68877761 -128317671 + MLT1E1A LTR MaLR 308 680 0 5 1110 21 57 0 0 chr1 68877857 68877892 -128317540 + AT_rich Low_complexity Low_complexity 1 35 0 5 1110 334 294 110 14 chr1 68879604 68879749 -128315683 + HAL1-3A_ME LINE L1 2285 2443 -415 5 1110 432 0 0 0 chr1 68880583 68880631 -128314801 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1110 412 268 46 23 chr1 68880781 68880911 -128314521 + B1F1 SINE Alu 7 139 -10 5 1110 563 306 15 15 chr1 68882333 68882469 -128312963 - B1_Mur1 SINE Alu -11 138 3 5 1110 25 51 0 0 chr1 68882745 68882784 -128312648 + AT_rich Low_complexity Low_complexity 1 39 0 5 1110 21 0 0 0 chr1 68884632 68884653 -128310779 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 21 71 0 0 chr1 68885037 68885079 -128310353 + AT_rich Low_complexity Low_complexity 1 42 0 5 1110 220 311 32 43 chr1 68885259 68885353 -128310079 + B1_Mur1 SINE Alu 54 146 -3 5 1110 803 10 10 0 chr1 68885833 68885929 -128309503 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 5 1110 24 67 0 0 chr1 68886342 68886387 -128309045 + AT_rich Low_complexity Low_complexity 1 45 0 5 1110 198 91 0 0 chr1 68886517 68886550 -128308882 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1110 2054 203 45 2 chr1 68886825 68887244 -128308188 + Lx5 LINE L1 6611 7047 -3 5 1110 4653 27 7 0 chr1 68887358 68887906 -128307526 + L1Md_F2 LINE L1 6017 6568 -14 5 1110 399 149 0 0 chr1 68889344 68889418 -128306014 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1110 22 35 0 0 chr1 68889596 68889625 -128305807 + AT_rich Low_complexity Low_complexity 1 29 0 5 1110 29 0 0 0 chr1 68891589 68891618 -128303814 + AT_rich Low_complexity Low_complexity 1 29 0 5 1110 288 369 57 0 chr1 68892452 68892522 -128302910 + Lx8 LINE L1 7160 7229 -244 5 1110 216 0 0 0 chr1 68892522 68892546 -128302886 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1110 288 369 57 0 chr1 68892546 68892597 -128302835 + Lx8 LINE L1 7230 7287 -186 5 1110 871 204 12 83 chr1 68892704 68892945 -128302487 + URR1B DNA MER1_type 2 225 0 5 1110 186 318 83 18 chr1 68893491 68893600 -128301832 - L2a LINE L2 -374 3052 2937 5 1110 244 263 0 17 chr1 68894214 68894272 -128301160 + ID4 SINE ID 18 74 -9 5 1110 252 0 0 0 chr1 68894516 68894544 -128300888 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1110 378 0 0 0 chr1 68894822 68894864 -128300568 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1110 231 61 0 0 chr1 68894902 68894935 -128300497 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1110 23 68 0 0 chr1 68897383 68897427 -128298005 + AT_rich Low_complexity Low_complexity 1 44 0 5 1110 247 42 0 78 chr1 68898119 68898170 -128297262 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1110 747 131 48 48 chr1 68899009 68899177 -128296255 + Lx3B LINE L1 6792 6959 -14 5 1110 1529 169 94 0 chr1 68899178 68899485 -128295947 + Lx LINE L1 6319 6654 0 5 1110 22 70 0 0 chr1 68899485 68899528 -128295904 + AT_rich Low_complexity Low_complexity 1 43 0 5 1110 1353 257 93 5 chr1 68899557 68899944 -128295488 + Lx2B LINE L1 6579 6999 -1 5 1110 261 187 0 0 chr1 68900688 68900763 -128294669 + T-rich Low_complexity Low_complexity 1 75 0 5 1110 1652 66 0 0 chr1 68900766 68900977 -128294455 - L1_Mus1 LINE L1 -1 6566 6356 5 1110 24 24 0 24 chr1 68901036 68901059 -128294373 + AT_rich Low_complexity Low_complexity 1 23 0 5 1110 1134 127 5 16 chr1 68901059 68901251 -128294181 - Lx3A LINE L1 -1 6980 6791 5 1110 24 24 0 24 chr1 68901251 68901269 -128294163 + AT_rich Low_complexity Low_complexity 1 18 0 5 1110 620 192 80 24 chr1 68901835 68902048 -128293384 + Lx9 LINE L1 7415 7639 -5 5 1110 4185 38 12 0 chr1 68902745 68903243 -128292189 + L1Md_F2 LINE L1 6065 6568 -14 5 1110 1798 151 9 34 chr1 68903588 68903916 -128291516 + Lx3B LINE L1 6650 6969 -4 5 1110 366 285 243 17 chr1 68903931 68904277 -128291155 - Arthur1 DNA Tip100 -64 3883 3460 5 1110 236 365 78 98 chr1 68904923 68905230 -128290202 + MLT1C LTR MaLR 106 406 -61 5 1110 318 98 0 0 chr1 68906888 68906939 -128288493 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1110 354 355 95 36 chr1 68906949 68907206 -128288226 - B4 SINE B4 -27 265 4 5 1110 21 0 0 0 chr1 68907223 68907244 -128288188 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 395 19 19 0 chr1 68909192 68909244 -128286188 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1110 365 0 22 0 chr1 68909521 68909566 -128285866 + (ATTAG)n Simple_repeat Simple_repeat 4 49 0 5 1110 27 29 0 0 chr1 68909881 68909915 -128285517 + AT_rich Low_complexity Low_complexity 1 34 0 5 1110 416 302 52 39 chr1 68910106 68910261 -128285171 + B3A SINE B2 42 198 0 5 1110 290 230 238 48 chr1 68911207 68911312 -128284120 + B1F SINE Alu 18 142 -7 5 1110 324 0 0 0 chr1 68911802 68911838 -128283594 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1110 194 349 26 2 chr1 68912526 68912598 -128282834 + L2c LINE L2 3256 3343 -44 5 1110 3336 170 20 21 chr1 68912629 68913241 -128282191 - Lx2 LINE L1 0 6997 6387 5 1110 2045 254 80 61 chr1 68913296 68914201 -128281231 + RMER17B LTR ERVK 1 857 -3 5 1110 450 0 0 0 chr1 68914297 68914347 -128281085 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1110 321 26 0 0 chr1 68914347 68914384 -128281048 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1110 339 65 0 0 chr1 68914518 68914564 -128280868 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 5 1110 21 0 0 0 chr1 68915510 68915531 -128279901 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 304 332 105 51 chr1 68915902 68916159 -128279273 + B4 SINE B4 6 276 -16 5 1110 324 0 0 0 chr1 68917343 68917379 -128278053 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1110 525 277 27 13 chr1 68917979 68918129 -128277303 - B3A SINE B2 -46 152 1 5 1110 257 81 15 46 chr1 68918214 68918279 -128277153 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 5 1110 356 318 31 24 chr1 68919701 68919849 -128275583 + MER5A DNA MER1_type 15 189 0 5 1110 180 125 0 0 chr1 68920928 68920960 -128274472 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1110 275 173 0 0 chr1 68920993 68921045 -128274387 - B2_Mm2 SINE B2 -91 102 51 5 1110 1001 171 11 6 chr1 68921078 68921255 -128274177 - B2_Mm1t SINE B2 -14 179 2 5 1110 657 0 0 0 chr1 68922542 68922615 -128272817 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1110 7592 112 21 11 chr1 68923138 68924365 -128271067 - MusHAL1 LINE L1 -626 2086 847 5 1110 1936 222 24 8 chr1 68924451 68924993 -128270439 + Lx4B LINE L1 6435 7000 0 5 1110 894 316 54 18 chr1 68925038 68925425 -128270007 - MTD LTR MaLR -18 401 1 5 1110 1349 321 16 5 chr1 68925444 68925876 -128269556 + Lx8 LINE L1 6229 6665 -808 5 1110 5691 8 0 1 chr1 68925871 68926519 -128268913 + L1Md_A LINE L1 4940 5586 -297 5 1110 8423 32 1 0 chr1 68926519 68927514 -128267918 + L1Md_A LINE L1 5587 6582 0 5 1110 326 85 0 0 chr1 68928649 68928708 -128266724 + L1_Mus3 LINE L1 6576 6634 -4 5 1110 1575 89 17 4 chr1 68928715 68928953 -128266479 + L1_Mus3 LINE L1 6391 6631 -7 5 1110 576 0 0 0 chr1 68929475 68929539 -128265893 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1110 3366 39 0 5 chr1 68930485 68930896 -128264536 + L1Md_F3 LINE L1 6162 6570 -14 5 1110 345 391 29 6 chr1 68931057 68931232 -128264200 + Tigger5 DNA MER2_type 32 210 -2196 5 1110 216 0 0 0 chr1 68931910 68931934 -128263498 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1110 1200 106 0 0 chr1 68931936 68932115 -128263317 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 6 1110 26 50 0 0 chr1 68932255 68932295 -128263137 + AT_rich Low_complexity Low_complexity 1 40 0 6 1110 23 54 0 0 chr1 68932956 68932993 -128262439 + AT_rich Low_complexity Low_complexity 1 37 0 6 1110 21 57 0 0 chr1 68933905 68933940 -128261492 + AT_rich Low_complexity Low_complexity 1 35 0 6 1110 416 139 13 0 chr1 68934137 68934216 -128261216 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1110 23 54 0 0 chr1 68934592 68934629 -128260803 + AT_rich Low_complexity Low_complexity 1 37 0 6 1110 21 57 0 0 chr1 68934719 68934754 -128260678 + AT_rich Low_complexity Low_complexity 1 35 0 6 1110 32 43 0 0 chr1 68935081 68935127 -128260305 + AT_rich Low_complexity Low_complexity 1 46 0 6 1110 1042 221 50 19 chr1 68935165 68935326 -128260106 - Lx9 LINE L1 -1 7643 7473 6 1110 267 103 0 0 chr1 68935326 68935365 -128260067 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1110 1042 221 50 19 chr1 68935365 68935526 -128259906 - Lx9 LINE L1 -172 7472 7311 6 1110 263 294 61 75 chr1 68935556 68935784 -128259648 + L1MB8 LINE L1 5952 6176 -2 6 1110 341 357 79 0 chr1 68935818 68935944 -128259488 + RSINE1 SINE B4 16 151 -14 6 1110 23 0 0 0 chr1 68935989 68936012 -128259420 + AT_rich Low_complexity Low_complexity 1 23 0 6 1110 1284 254 72 16 chr1 68936981 68937369 -128258063 - MTD LTR MaLR -9 410 1 6 1110 227 259 41 109 chr1 68937707 68937854 -128257578 - L1M2 LINE L1 -398 5902 5766 6 1110 223 333 24 55 chr1 68937894 68938021 -128257411 - MIRb SINE MIR -65 203 81 6 1110 493 352 37 25 chr1 68939720 68940154 -128255278 - L1MA6 LINE L1 -48 6252 5814 6 1110 180 0 0 0 chr1 68940155 68940175 -128255257 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1110 1225 34 0 0 chr1 68940175 68940322 -128255110 - B1_Mus2 SINE Alu 0 147 1 6 1110 455 267 74 17 chr1 68940441 68940643 -128254789 - L1M2 LINE L1 -565 5618 5407 6 1110 244 325 35 46 chr1 68940666 68940753 -128254679 - B1F1 SINE Alu -18 131 46 6 1110 249 33 0 0 chr1 68941212 68941242 -128254190 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1110 5364 219 36 30 chr1 68942149 68943332 -128252100 + Lx5 LINE L1 5767 6957 -93 6 1110 877 88 0 14 chr1 68943681 68943820 -128251612 + (GAA)n Simple_repeat Simple_repeat 2 138 0 6 138 2529 84 48 5 chr1 68943842 68944235 -128251197 + Lx3_Mus LINE L1 6600 7009 0 6 1111 967 136 0 0 chr1 68944266 68944406 -128251026 + B1_Mus1 SINE Alu 1 140 -8 6 1111 400 237 164 33 chr1 68944835 68944957 -128250475 + B1_Mur2 SINE Alu 11 148 -1 6 1111 3114 63 27 5 chr1 68945197 68945636 -128249796 - L1Md_F2 LINE L1 0 6582 6144 6 1111 203 103 0 25 chr1 68945636 68945650 -128249782 + (TTTG)n Simple_repeat Simple_repeat 2 15 0 6 1111 288 70 0 0 chr1 68946000 68946043 -128249389 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1111 223 204 20 0 chr1 68947797 68947846 -128247586 + (CATA)n Simple_repeat Simple_repeat 3 52 0 6 1111 180 179 0 0 chr1 68948003 68948042 -128247390 + (CATA)n Simple_repeat Simple_repeat 2 40 0 6 1111 218 356 23 11 chr1 68948817 68948905 -128246527 - B1_Mus2 SINE Alu -56 91 3 6 1111 1185 124 17 0 chr1 68949227 68949404 -128246028 + B2_Mm2 SINE B2 2 181 -14 6 1111 14656 24 0 1 chr1 68949682 68952087 -128243345 - L1Md_T LINE L1 0 6582 4179 6 1111 304 335 51 102 chr1 68952142 68952318 -128243114 + B4A SINE B4 12 178 -114 6 1111 232 293 60 107 chr1 68952355 68952439 -128242993 + RSINE1 SINE B4 86 165 0 6 1111 199 385 84 22 chr1 68952873 68953051 -128242381 - L4 LINE RTE -1474 555 367 6 1111 690 13 0 0 chr1 68953380 68953459 -128241973 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 6 1111 267 314 22 44 chr1 68954611 68954701 -128240731 + B4A SINE B4 1 88 -204 6 1111 1010 240 74 26 chr1 68954701 68955052 -128240380 + Lx9 LINE L1 7150 7517 -127 6 1111 305 234 46 17 chr1 68955052 68955226 -128240206 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 6 1111 330 179 10 21 chr1 68955226 68955323 -128240109 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1111 458 228 47 6 chr1 68955330 68955502 -128239930 + Lx9 LINE L1 7458 7636 -8 6 1111 690 13 0 0 chr1 68955711 68955790 -128239642 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 6 1111 23 0 0 0 chr1 68955894 68955917 -128239515 + AT_rich Low_complexity Low_complexity 1 23 0 6 1111 2259 154 33 16 chr1 68956891 68957314 -128238118 + Lx2 LINE L1 6567 6996 -1 6 1111 209 227 0 0 chr1 68957327 68957371 -128238061 + A-rich Low_complexity Low_complexity 1 44 0 6 1111 542 291 133 20 chr1 68957516 68957817 -128237615 + Lx9 LINE L1 6660 6994 -650 6 1111 393 22 0 0 chr1 68958439 68958485 -128236947 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1111 1627 215 103 16 chr1 68958669 68959047 -128236385 - MTC LTR MaLR -8 413 3 6 1111 486 323 24 86 chr1 68959218 68959509 -128235923 + B4 SINE B4 2 274 -18 6 1111 201 171 0 0 chr1 68960402 68960437 -128234995 + A-rich Low_complexity Low_complexity 1 35 0 6 1111 698 183 13 0 chr1 68961788 68961941 -128233491 + (TATG)n Simple_repeat Simple_repeat 4 158 0 6 1111 228 67 0 0 chr1 68962898 68962928 -128232504 + (ATG)n Simple_repeat Simple_repeat 3 32 0 6 1111 641 75 33 16 chr1 68963818 68963940 -128231492 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 6 1111 1321 244 19 37 chr1 68965952 68966327 -128229105 - ORR1D1 LTR MaLR -2 372 5 6 1111 21 36 0 0 chr1 68967685 68967713 -128227719 + AT_rich Low_complexity Low_complexity 1 28 0 6 1111 684 0 0 0 chr1 68968162 68968238 -128227194 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1111 24 32 0 0 chr1 68968329 68968360 -128227072 + AT_rich Low_complexity Low_complexity 1 31 0 6 1111 3372 65 33 16 chr1 68968621 68969073 -128226359 + L1Md_F2 LINE L1 6065 6524 -58 6 1111 1874 95 10 60 chr1 68969135 68969449 -128225983 + Lx3A LINE L1 6684 6981 0 6 1111 435 370 73 9 chr1 68969636 68969868 -128225564 - MLT1G LTR MaLR -291 300 54 6 1111 1847 231 25 98 chr1 68970267 68970858 -128224574 - Lx9 LINE L1 -53 7591 7044 6 1111 299 354 6 63 chr1 68972008 68972183 -128223249 + RMER4A LTR ERVK 25 189 -277 6 1111 273 297 40 0 chr1 68972580 68972681 -128222751 + (CATG)n Simple_repeat Simple_repeat 2 106 0 6 1111 191 386 125 0 chr1 68972828 68972916 -128222516 - MIR SINE MIR -58 150 52 6 1111 1544 145 40 125 chr1 68973032 68973480 -128221952 + RMER17C LTR ERVK 1 410 0 6 1111 501 231 62 0 chr1 68974045 68974205 -128221227 - Lx9 LINE L1 -9 7635 7466 6 1111 21 36 0 0 chr1 68974298 68974326 -128221106 + AT_rich Low_complexity Low_complexity 1 28 0 6 1111 3513 65 2 4 chr1 68974328 68974791 -128220641 - L1Md_F3 LINE L1 -1 6583 6122 6 1111 22 35 0 0 chr1 68975859 68975888 -128219544 + AT_rich Low_complexity Low_complexity 1 29 0 6 1111 35 63 0 0 chr1 68976329 68976392 -128219040 + AT_rich Low_complexity Low_complexity 1 63 0 6 1111 21 36 0 0 chr1 68976436 68976464 -128218968 + AT_rich Low_complexity Low_complexity 1 28 0 6 1111 432 0 0 0 chr1 68976873 68976921 -128218511 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1111 405 0 0 0 chr1 68976921 68976965 -128218467 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1111 567 0 0 0 chr1 68977406 68977469 -128217963 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1111 465 19 0 0 chr1 68977469 68977522 -128217910 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1111 214 329 12 60 chr1 68977580 68977664 -128217768 - B2_Mm2 SINE B2 -111 84 5 6 1111 5621 102 9 25 chr1 68977802 68978664 -128216768 - L1_Mus3 LINE L1 -1 6637 5790 6 1111 390 42 0 0 chr1 68978724 68978772 -128216660 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1111 675 84 0 0 chr1 68979087 68979182 -128216250 + (CATA)n Simple_repeat Simple_repeat 2 96 0 6 1111 513 0 0 0 chr1 68980162 68980219 -128215213 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1111 27 29 0 0 chr1 68981830 68981864 -128213568 + AT_rich Low_complexity Low_complexity 1 34 0 6 1111 192 210 86 114 chr1 68982043 68982113 -128213319 - L4 LINE RTE -267 1762 1695 6 1111 3844 92 37 9 chr1 68982236 68982797 -128212635 - L1_Mus3 LINE L1 -7 6631 6055 6 1111 1508 69 15 0 chr1 68982797 68983001 -128212431 + L1_Mus3 LINE L1 5846 6052 -586 6 1111 581 298 25 12 chr1 68983143 68983306 -128212126 + B4A SINE B4 114 278 -14 6 1111 21 0 0 0 chr1 68983595 68983616 -128211816 + AT_rich Low_complexity Low_complexity 1 21 0 6 1111 486 88 0 0 chr1 68984972 68985040 -128210392 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1111 219 255 0 18 chr1 68985040 68985096 -128210336 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 1111 594 203 0 0 chr1 68986153 68986286 -128209146 + (TA)n Simple_repeat Simple_repeat 2 134 0 6 1111 984 211 81 5 chr1 68986574 68986783 -128208649 - URR1A DNA MER1_type -1 225 1 6 1111 450 252 31 39 chr1 68987252 68987380 -128208052 - MER20 DNA MER1_type -89 130 4 6 1111 412 323 38 0 chr1 68988135 68988268 -128207164 + B3 SINE B2 76 213 -3 6 1111 1176 82 0 0 chr1 68988344 68988491 -128206941 + B1_Mus1 SINE Alu 1 147 -1 6 1111 548 81 11 0 chr1 68988671 68988758 -128206674 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1111 351 0 0 0 chr1 68989292 68989331 -128206101 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1111 1233 101 0 0 chr1 68989541 68989720 -128205712 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 6 1111 471 331 46 41 chr1 68990550 68990745 -128204687 - B3A SINE B2 -2 196 1 6 1111 221 75 25 0 chr1 68991627 68991667 -128203765 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1111 681 286 189 40 chr1 68991767 68992095 -128203337 + MTE2b LTR MaLR 3 379 0 7 1111 341 310 12 72 chr1 68992231 68992398 -128203034 - MER3 DNA MER1_type -19 190 34 7 1111 287 364 41 8 chr1 68994007 68994129 -128201303 + MLT1B LTR MaLR 192 317 -73 7 1111 868 118 26 0 chr1 68994285 68994437 -128200995 + (TCTCCC)n Simple_repeat Simple_repeat 2 157 0 7 1111 207 204 0 0 chr1 68994443 68994497 -128200935 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1111 258 222 0 0 chr1 68994574 68994628 -128200804 + MLT1B LTR MaLR 320 373 -17 7 1111 286 263 110 10 chr1 68994796 68994896 -128200536 - MER3 DNA MER1_type -19 190 81 7 1111 4305 172 75 19 chr1 68995271 68996168 -128199264 + Lx2B LINE L1 6050 6996 -4 7 1111 216 97 0 0 chr1 68998035 68998066 -128197366 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1111 566 28 14 0 chr1 68998433 68998505 -128196927 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 1111 235 125 42 0 chr1 68998505 68998553 -128196879 - Lx9 LINE L1 -52 7592 7543 7 1111 865 240 60 0 chr1 68998571 68998788 -128196644 - Lx9 LINE L1 -200 7444 7215 7 1111 3965 51 12 6 chr1 68998934 68999443 -128195989 + L1_Mus3 LINE L1 6121 6632 -6 7 1111 399 201 105 28 chr1 68999837 68999980 -128195452 + Lx9 LINE L1 7208 7361 -283 7 1111 395 200 10 10 chr1 69000002 69000098 -128195334 + Lx9 LINE L1 7387 7482 -162 1 1111 209 176 0 0 chr1 69000309 69000343 -128195089 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1111 32 26 0 0 chr1 69000358 69000397 -128195035 + AT_rich Low_complexity Low_complexity 1 39 0 3 1111 24 0 0 0 chr1 69000532 69000556 -128194876 + AT_rich Low_complexity Low_complexity 1 24 0 4 1111 462 338 33 0 chr1 69000616 69000767 -128194665 + B3A SINE B2 1 156 -42 5 1111 704 12 12 0 chr1 69000769 69000854 -128194578 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 6 1111 954 299 82 6 chr1 69001374 69001740 -128193692 - Lx7 LINE L1 -289 7407 7014 7 1111 183 80 0 0 chr1 69001746 69001771 -128193661 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 8 1111 405 165 10 20 chr1 69003181 69003280 -128192152 + (TA)n Simple_repeat Simple_repeat 1 98 0 9 1111 1688 80 29 8 chr1 69004608 69004847 -128190585 + L1Md_F2 LINE L1 6339 6582 0 1 1111 950 274 72 8 chr1 69004991 69005256 -128190176 + MTE2b LTR MaLR 96 377 -2 1 1111 460 274 103 26 chr1 69006245 69006440 -128188992 + B3 SINE B2 1 210 -6 1 1111 1715 61 12 20 chr1 69006609 69006858 -128188574 - MTB_Mm LTR MaLR -160 247 1 1 1111 252 302 0 0 chr1 69008599 69008685 -128186747 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1111 25 31 0 0 chr1 69008901 69008933 -128186499 + AT_rich Low_complexity Low_complexity 1 32 0 1 1111 280 182 61 0 chr1 69009296 69009428 -128186004 + (TA)n Simple_repeat Simple_repeat 1 140 0 1 1111 225 0 0 0 chr1 69009603 69009628 -128185804 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1111 396 19 0 0 chr1 69009628 69009681 -128185751 - B1_Mus2 SINE Alu 0 147 95 1 1111 267 133 0 0 chr1 69011015 69011060 -128184372 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1111 1264 26 0 0 chr1 69011511 69011666 -128183766 + B2_Mm1t SINE B2 1 155 -38 2 1111 636 38 0 0 chr1 69011667 69011746 -128183686 + (TAAA)n Simple_repeat Simple_repeat 3 81 0 2 1111 324 71 0 0 chr1 69011764 69011806 -128183626 - L1_Mm LINE L1 -753 5130 5089 2 1111 1977 83 67 13 chr1 69011806 69012122 -128183310 + L1Md_F2 LINE L1 6249 6581 -1 2 1111 207 66 17 109 chr1 69012759 69012858 -128182574 + T-rich Low_complexity Low_complexity 23 112 0 2 1111 1112 39 11 33 chr1 69012858 69013042 -128182390 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1111 207 66 17 109 chr1 69013042 69013061 -128182371 + T-rich Low_complexity Low_complexity 5 22 0 2 1111 1332 68 0 0 chr1 69013075 69013251 -128182181 + (TTCTCC)n Simple_repeat Simple_repeat 5 180 0 2 1111 362 172 7 7 chr1 69013358 69013505 -128181927 + (CATATA)n Simple_repeat Simple_repeat 1 147 0 2 1111 22 26 0 25 chr1 69014209 69014234 -128181198 + AT_rich Low_complexity Low_complexity 1 25 0 2 1111 1952 100 26 0 chr1 69014234 69014543 -128180889 - L1_Mus3 LINE L1 -9 6629 6313 3 1111 22 26 0 25 chr1 69014543 69014557 -128180875 + AT_rich Low_complexity Low_complexity 1 14 0 3 1111 3076 140 34 0 chr1 69014713 69015213 -128180219 - L1_Mur2 LINE L1 -1313 4564 4048 3 1111 920 132 25 6 chr1 69015518 69015678 -128179754 - Lx LINE L1 -7 6647 6485 3 1111 348 24 0 0 chr1 69015865 69015906 -128179526 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1111 279 333 10 10 chr1 69016764 69016864 -128178568 + MER5A1 DNA MER1_type 6 105 -61 3 1111 205 29 59 0 chr1 69016905 69016939 -128178493 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1111 21 0 0 0 chr1 69017119 69017140 -128178292 + AT_rich Low_complexity Low_complexity 1 21 0 3 1111 1717 147 78 7 chr1 69017215 69017510 -128177922 + ORR1A3 LTR MaLR 3 318 -8 3 1111 411 360 84 84 chr1 69017522 69017795 -128177637 + B4 SINE B4 16 288 -4 3 1111 396 0 0 0 chr1 69017840 69017884 -128177548 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1111 417 116 0 0 chr1 69017999 69018068 -128177364 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1111 21 0 0 0 chr1 69018383 69018404 -128177028 + AT_rich Low_complexity Low_complexity 1 21 0 4 1111 24 77 0 0 chr1 69018450 69018502 -128176930 + AT_rich Low_complexity Low_complexity 1 52 0 4 1111 6418 84 0 10 chr1 69018710 69019578 -128175854 + L1_Mus2 LINE L1 5708 6566 0 4 1111 504 0 0 0 chr1 69019640 69019696 -128175736 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1111 260 260 0 27 chr1 69021504 69021579 -128173853 + ID4 SINE ID 11 83 0 4 1111 4205 83 17 15 chr1 69022038 69022627 -128172805 - L1_Mus1 LINE L1 0 6567 5978 4 1111 228 235 83 101 chr1 69023241 69023350 -128172082 + MTEb LTR MaLR 273 379 0 4 1111 427 280 68 0 chr1 69023991 69024123 -128171309 + B1F SINE Alu 2 142 -7 4 1111 28 91 0 0 chr1 69024215 69024292 -128171140 + AT_rich Low_complexity Low_complexity 1 77 0 5 1111 588 223 185 6 chr1 69026001 69026204 -128169228 - Lx3C LINE L1 0 6997 6755 5 1111 3180 118 6 10 chr1 69026638 69027134 -128168298 + Lx LINE L1 6154 6647 -7 5 1111 190 265 20 0 chr1 69027597 69027646 -128167786 - MIRb SINE MIR -201 67 18 5 1111 428 162 0 0 chr1 69027675 69027749 -128167683 - L1_Mm LINE L1 -884 4999 4926 5 1111 6753 55 9 3 chr1 69027744 69029140 -128166292 + L1Md_F2 LINE L1 5009 6415 -167 5 1111 205 161 0 0 chr1 69030148 69030179 -128165253 + (CATA)n Simple_repeat Simple_repeat 1 31 0 5 1111 501 17 0 0 chr1 69031766 69031824 -128163608 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1111 498 293 42 24 chr1 69032429 69032597 -128162835 + Lx9 LINE L1 7268 7438 -206 5 1111 603 0 0 0 chr1 69033599 69033666 -128161766 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1111 294 148 0 0 chr1 69033666 69033720 -128161712 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1111 22 0 0 0 chr1 69034427 69034449 -128160983 + AT_rich Low_complexity Low_complexity 1 22 0 6 1111 29 28 0 0 chr1 69034724 69034760 -128160672 + AT_rich Low_complexity Low_complexity 1 36 0 6 1111 192 403 60 13 chr1 69036321 69036472 -128158960 + MIRb SINE MIR 51 208 -60 6 1111 550 296 11 22 chr1 69036751 69036934 -128158498 + Lx7 LINE L1 5596 5776 -1920 6 1111 203 133 0 0 chr1 69037133 69037163 -128158269 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1111 1433 218 98 17 chr1 69037384 69037730 -128157702 + ORR1D1 LTR MaLR 1 374 0 6 1111 3528 179 25 19 chr1 69037810 69038498 -128156934 + RLTR17 LTR ERVK 1 692 0 6 1111 905 323 138 14 chr1 69038528 69039115 -128156317 + Lx8 LINE L1 6562 7221 -252 6 1111 266 309 113 7 chr1 69039452 69039602 -128155830 + L1MD2 LINE L1 5603 5768 -591 6 1111 352 366 51 17 chr1 69039774 69039952 -128155480 + L1MD2 LINE L1 5980 6163 -196 6 1111 210 176 0 0 chr1 69040969 69041020 -128154412 + (TAG)n Simple_repeat Simple_repeat 1 51 0 7 1111 508 250 15 7 chr1 69041020 69041157 -128154275 + Lx7 LINE L1 7555 7692 -4 7 1111 298 333 89 11 chr1 69042424 69042615 -128152817 - MIR SINE MIR 0 262 57 7 1111 227 288 15 0 chr1 69042671 69042737 -128152695 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 7 1111 1614 104 4 20 chr1 69042935 69043190 -128152242 + L1_Mus2 LINE L1 6314 6564 -2 7 1111 363 351 30 21 chr1 69044663 69044899 -128150533 - L1MA6 LINE L1 -247 6053 5816 7 1111 180 0 0 0 chr1 69044934 69044954 -128150478 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1111 22 0 0 0 chr1 69045091 69045113 -128150319 + AT_rich Low_complexity Low_complexity 1 22 0 7 1111 723 24 0 0 chr1 69045450 69045535 -128149897 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 7 1111 22 35 0 0 chr1 69045599 69045628 -128149804 + AT_rich Low_complexity Low_complexity 1 29 0 7 1111 317 303 175 21 chr1 69045707 69045953 -128149479 - B4A SINE B4 -4 288 5 8 1111 6424 65 22 23 chr1 69046724 69047601 -128147831 - L1_Mus2 LINE L1 0 6566 5691 8 1111 1097 88 6 0 chr1 69047729 69047888 -128147544 + (TTC)n Simple_repeat Simple_repeat 3 162 0 8 1111 21 36 0 0 chr1 69049615 69049643 -128145789 + AT_rich Low_complexity Low_complexity 1 28 0 8 1111 384 130 0 0 chr1 69049696 69049765 -128145667 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1111 22 0 0 0 chr1 69050249 69050271 -128145161 + AT_rich Low_complexity Low_complexity 1 22 0 8 1111 279 79 0 0 chr1 69050730 69050768 -128144664 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 8 1111 1441 174 0 41 chr1 69050768 69051038 -128144394 + RMER6A LTR ERVK 495 753 -3 8 1111 432 0 0 0 chr1 69052179 69052227 -128143205 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1111 2101 149 36 78 chr1 69052528 69052964 -128142468 - Lx2 LINE L1 0 6997 6231 8 1111 207 0 0 0 chr1 69054252 69054275 -128141157 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1111 33 66 0 0 chr1 69054387 69054448 -128140984 + AT_rich Low_complexity Low_complexity 1 61 0 9 1111 227 258 45 15 chr1 69054761 69054828 -128140604 + ID_B1 SINE B4 147 215 -9 9 1111 276 323 10 0 chr1 69055201 69055297 -128140135 + GA-rich Low_complexity Low_complexity 1 97 0 9 1111 21 71 0 0 chr1 69055389 69055431 -128140001 + AT_rich Low_complexity Low_complexity 1 42 0 9 1111 2093 86 7 0 chr1 69055671 69055961 -128139471 + L1_Mus2 LINE L1 6274 6565 -1 9 1111 21 0 0 0 chr1 69055965 69055986 -128139446 + AT_rich Low_complexity Low_complexity 1 21 0 9 1111 24 0 0 0 chr1 69056165 69056189 -128139243 + AT_rich Low_complexity Low_complexity 1 24 0 9 1111 512 15 0 15 chr1 69056300 69056366 -128139066 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1111 24 32 0 0 chr1 69057270 69057301 -128138131 + AT_rich Low_complexity Low_complexity 1 31 0 9 1111 261 83 0 0 chr1 69057464 69057500 -128137932 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1 1111 26 30 0 0 chr1 69058583 69058616 -128136816 + AT_rich Low_complexity Low_complexity 1 33 0 1 1111 3347 169 47 61 chr1 69058649 69059350 -128136082 - Lx5 LINE L1 -82 6968 6278 1 1111 468 268 150 21 chr1 69059381 69059568 -128135864 - B3 SINE B2 -5 211 1 1 1111 937 311 55 36 chr1 69059568 69059932 -128135500 + MTEa LTR MaLR 3 373 -6 1 1111 440 111 14 0 chr1 69060762 69060834 -128134598 + (TTTA)n Simple_repeat Simple_repeat 2 74 0 1 1111 1081 287 71 35 chr1 69061116 69061719 -128133713 - L1MA6 LINE L1 -6 6294 5670 1 1111 355 292 94 35 chr1 69061817 69062069 -128133363 + MTEa LTR MaLR 100 379 0 1 1111 22 0 0 0 chr1 69063705 69063727 -128131705 + AT_rich Low_complexity Low_complexity 1 22 0 1 1111 263 271 14 28 chr1 69063801 69063873 -128131559 + B3 SINE B2 42 112 -104 1 1111 31 0 0 0 chr1 69064377 69064408 -128131024 + AT_rich Low_complexity Low_complexity 1 31 0 1 1111 369 0 0 0 chr1 69064861 69064902 -128130530 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 1111 1078 52 0 0 chr1 69064902 69065036 -128130396 - B1_Mus1 SINE Alu -13 135 2 1 1111 1525 52 0 0 chr1 69065128 69065319 -128130113 + L1_Mus1 LINE L1 6377 6567 0 1 1111 186 329 88 12 chr1 69066604 69066684 -128128748 + MIR SINE MIR 18 103 -105 1 1111 342 45 0 0 chr1 69068066 69068110 -128127322 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1111 2024 279 73 6 chr1 69068621 69069315 -128126117 + Lx6 LINE L1 6718 7459 -1 1 1111 284 211 14 0 chr1 69072331 69072402 -128123030 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1111 420 239 185 25 chr1 69073057 69073214 -128122218 + Lx8 LINE L1 7108 7289 -184 1 1111 331 295 90 55 chr1 69073146 69073347 -128122085 + RMER1C Other Other 1111 1318 -24 1 1111 33 0 0 0 chr1 69073397 69073430 -128122002 + AT_rich Low_complexity Low_complexity 1 33 0 1 1111 590 221 71 0 chr1 69073452 69073606 -128121826 - Lx4A LINE L1 -1 7057 6893 1 1111 348 24 0 0 chr1 69073635 69073676 -128121756 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1111 399 115 26 0 chr1 69073963 69074041 -128121391 - L1Md_F3 LINE L1 0 6584 6505 1 1111 219 314 54 62 chr1 69074625 69074754 -128120678 + MIR3 SINE MIR 77 204 -4 1 1112 863 67 0 8 chr1 69076010 69076130 -128119302 + (GGA)n Simple_repeat Simple_repeat 3 121 0 1 1112 24 32 0 0 chr1 69077725 69077756 -128117676 + AT_rich Low_complexity Low_complexity 1 31 0 1 1112 25 31 0 0 chr1 69077847 69077879 -128117553 + AT_rich Low_complexity Low_complexity 1 32 0 1 1112 369 397 15 5 chr1 69077954 69078149 -128117283 - ID_B1 SINE B4 -23 201 5 1 1112 867 115 0 0 chr1 69078435 69078574 -128116858 + (CCCTAG)n Simple_repeat Simple_repeat 4 142 0 1 1112 217 100 0 39 chr1 69078751 69078803 -128116629 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 1 1112 984 93 50 0 chr1 69078803 69078943 -128116489 - B1_Mus2 SINE Alu 0 147 1 1 1112 234 0 0 0 chr1 69079002 69079028 -128116404 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1112 311 264 121 23 chr1 69079028 69079160 -128116272 + L1M2 LINE L1 5539 5683 -608 1 1112 438 275 172 11 chr1 69079640 69079820 -128115612 + B3 SINE B2 3 211 -5 1 1112 1991 271 9 59 chr1 69080108 69080384 -128115048 + Lx6 LINE L1 6923 7170 -290 1 1112 1095 76 14 0 chr1 69080384 69080529 -128114903 - B1_Mm SINE Alu 0 147 1 1 1112 1991 271 9 59 chr1 69080529 69080808 -128114624 + Lx6 LINE L1 7171 7450 -10 1 1112 258 226 75 0 chr1 69081007 69081060 -128114372 + Lx6 LINE L1 7077 7133 -327 1 1112 267 314 0 0 chr1 69082552 69082638 -128112794 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1112 2895 58 86 2 chr1 69083786 69084180 -128111252 - L1_Mus2 LINE L1 0 6566 6140 1 1112 22 0 0 0 chr1 69084236 69084258 -128111174 + AT_rich Low_complexity Low_complexity 1 22 0 1 1112 249 333 0 0 chr1 69084521 69084599 -128110833 + B1F SINE Alu 12 89 -60 1 1112 284 161 16 0 chr1 69084705 69084767 -128110665 + GA-rich Low_complexity Low_complexity 2 64 0 1 1112 2274 105 41 0 chr1 69084877 69085220 -128110212 + Lx LINE L1 6294 6650 -4 1 1112 301 200 34 34 chr1 69085585 69085704 -128109728 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 1 1112 398 236 80 26 chr1 69086775 69086888 -128108544 + Lx7 LINE L1 5653 5771 -1925 1 1112 297 0 0 0 chr1 69087448 69087481 -128107951 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1112 25 0 0 0 chr1 69088001 69088026 -128107406 + AT_rich Low_complexity Low_complexity 1 25 0 1 1112 189 0 0 0 chr1 69088494 69088515 -128106917 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1112 25 31 0 0 chr1 69088705 69088737 -128106695 + AT_rich Low_complexity Low_complexity 1 32 0 1 1112 31 0 0 0 chr1 69089105 69089136 -128106296 + AT_rich Low_complexity Low_complexity 1 31 0 1 1112 23 0 0 0 chr1 69089652 69089675 -128105757 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 192 209 47 0 chr1 69089905 69089948 -128105484 - L3 LINE CR1 -2416 2073 2029 1 1112 776 102 82 19 chr1 69091120 69091279 -128104153 - Lx3_Mus LINE L1 0 7009 6841 1 1112 468 0 0 0 chr1 69091536 69091588 -128103844 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1112 27 29 0 0 chr1 69091798 69091832 -128103600 + AT_rich Low_complexity Low_complexity 1 34 0 1 1112 1047 16 0 0 chr1 69094027 69094148 -128101284 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 1 1112 702 55 0 0 chr1 69094151 69094242 -128101190 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1 1112 267 103 0 0 chr1 69094484 69094523 -128100909 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1112 214 215 65 22 chr1 69096114 69096252 -128099180 + (TA)n Simple_repeat Simple_repeat 2 145 0 1 1112 770 150 0 11 chr1 69097274 69097456 -128097976 + CT-rich Low_complexity Low_complexity 1 180 0 1 1112 459 0 0 0 chr1 69097456 69097507 -128097925 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1112 324 224 132 0 chr1 69099074 69099150 -128096282 - B3 SINE B2 -129 87 2 1 1112 255 41 40 20 chr1 69099446 69099496 -128095936 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1112 222 160 0 0 chr1 69099841 69099891 -128095541 + A-rich Low_complexity Low_complexity 1 50 0 1 1112 4827 74 0 17 chr1 69100346 69101005 -128094427 + L1Md_F2 LINE L1 5932 6579 -3 1 1112 596 287 16 79 chr1 69101731 69101920 -128093512 - B3A SINE B2 -18 180 4 1 1112 188 327 0 0 chr1 69102142 69102197 -128093235 - MIRb SINE MIR -95 173 119 1 1112 218 308 98 23 chr1 69103517 69103650 -128091782 - L2a LINE L2 -71 3355 3213 1 1112 326 214 58 23 chr1 69103991 69104077 -128091355 - B4 SINE B4 -203 89 1 1 1112 1416 233 61 6 chr1 69104078 69104440 -128090992 + ORR1C2 LTR MaLR 1 382 -2 1 1112 385 286 20 10 chr1 69104757 69104856 -128090576 - RSINE1 SINE B4 -62 103 4 1 1112 24 0 0 0 chr1 69107064 69107088 -128088344 + AT_rich Low_complexity Low_complexity 1 24 0 1 1112 198 0 0 0 chr1 69107455 69107477 -128087955 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1112 2402 86 12 0 chr1 69109467 69109806 -128085626 + Lx3_Mus LINE L1 6662 7004 -5 1 1112 689 239 15 0 chr1 69109918 69110052 -128085380 - B3A SINE B2 -56 142 7 1 1112 629 319 6 0 chr1 69111295 69111461 -128083971 - B3A SINE B2 -31 167 1 1 1112 443 330 170 0 chr1 69111699 69111929 -128083503 + Lx8 LINE L1 6901 7169 -304 1 1112 1410 101 5 0 chr1 69112494 69112701 -128082731 - L1_Mus1 LINE L1 0 6567 6360 1 1112 2156 71 0 0 chr1 69112701 69112984 -128082448 + L1_Mus1 LINE L1 5803 6085 -482 1 1112 494 327 38 32 chr1 69113036 69113194 -128082238 + RSINE1 SINE B4 7 165 0 1 1112 636 306 92 22 chr1 69115416 69115643 -128079789 - ORR1D2 LTR MaLR -4 366 124 1 1112 978 47 0 0 chr1 69115643 69115770 -128079662 - L1_Mus1 LINE L1 -522 6045 5919 1 1112 3975 64 8 14 chr1 69115771 69116291 -128079141 + L1_Mus1 LINE L1 6051 6567 0 1 1112 977 67 8 0 chr1 69117020 69117154 -128078278 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 1 1112 426 310 58 0 chr1 69119457 69119612 -128075820 + RSINE1 SINE B4 2 165 0 1 1112 241 410 37 0 chr1 69119933 69120044 -128075388 + MLT1J1 LTR MaLR 71 186 -258 1 1112 943 263 146 28 chr1 69120044 69120400 -128075032 - MTD LTR MaLR 0 419 22 1 1112 183 80 0 0 chr1 69121746 69121771 -128073661 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1112 648 135 0 0 chr1 69122352 69122463 -128072969 + (TCCA)n Simple_repeat Simple_repeat 4 114 0 1 1112 243 310 47 12 chr1 69122531 69122616 -128072816 + MTEa LTR MaLR 256 343 -36 1 1112 386 374 40 8 chr1 69122748 69122996 -128072436 + LTR40c LTR ERVL 99 354 -111 1 1112 2058 96 16 10 chr1 69123173 69123479 -128071953 + ORR1A1-int LTR MaLR 1485 1792 0 1 1112 2809 50 12 0 chr1 69123479 69123821 -128071611 + ORR1A1 LTR MaLR 1 346 0 1 1112 27 29 0 0 chr1 69124807 69124841 -128070591 + AT_rich Low_complexity Low_complexity 1 34 0 1 1112 549 332 98 31 chr1 69124988 69125243 -128070189 + B4A SINE B4 8 279 -13 1 1112 428 357 5 36 chr1 69126260 69126452 -128068980 - Lx7 LINE L1 -393 7303 7118 1 1112 883 265 88 35 chr1 69126512 69126708 -128068724 + Lx7 LINE L1 6747 6942 -754 1 1112 438 124 0 0 chr1 69126708 69126797 -128068635 + (CAGA)n Simple_repeat Simple_repeat 4 92 0 1 1112 883 265 88 35 chr1 69126797 69126809 -128068623 + Lx7 LINE L1 6943 6963 -733 1 1112 1188 89 0 0 chr1 69126809 69126989 -128068443 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1112 883 265 88 35 chr1 69126989 69127096 -128068336 + Lx7 LINE L1 6964 7079 -617 1 1112 868 324 37 8 chr1 69127429 69127809 -128067623 + Lx9 LINE L1 7105 7495 -149 1 1112 23 0 0 0 chr1 69127888 69127911 -128067521 + AT_rich Low_complexity Low_complexity 1 23 0 1 1112 677 328 58 85 chr1 69128160 69128570 -128066862 + MTD LTR MaLR 1 399 -20 2 1112 3429 35 0 2 chr1 69129017 69129424 -128066008 + L1Md_T LINE L1 6031 6436 -146 2 1112 1403 77 5 5 chr1 69129431 69129627 -128065805 - L1_Mus2 LINE L1 -2 6564 6369 2 1112 300 216 25 63 chr1 69129914 69130072 -128065360 + (TTATA)n Simple_repeat Simple_repeat 5 156 0 2 1112 3853 204 51 38 chr1 69130165 69131005 -128064427 - RMER13A LTR ERVK -5 855 5 2 1112 436 173 0 0 chr1 69131978 69132053 -128063379 - B2_Mm2 SINE B2 -116 79 5 2 1112 552 30 0 0 chr1 69132069 69132135 -128063297 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1112 23 33 0 0 chr1 69133070 69133100 -128062332 + AT_rich Low_complexity Low_complexity 1 30 0 2 1112 25 0 0 0 chr1 69135697 69135722 -128059710 + AT_rich Low_complexity Low_complexity 1 25 0 2 1112 257 130 77 39 chr1 69135732 69135836 -128059596 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2 1112 21 0 0 0 chr1 69136652 69136673 -128058759 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 188 361 74 27 chr1 69137283 69137431 -128058001 - MIRb SINE MIR -71 197 43 2 1112 230 348 51 40 chr1 69137687 69137892 -128057540 + MIRc SINE MIR 24 239 -29 2 1112 777 306 5 16 chr1 69137934 69138123 -128057309 - B3 SINE B2 -22 194 8 2 1112 21 0 0 0 chr1 69138500 69138521 -128056911 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 766 272 19 5 chr1 69138670 69138877 -128056555 + B3 SINE B2 1 210 -6 2 1112 471 331 41 26 chr1 69139865 69140135 -128055297 - L3 LINE CR1 -136 4353 4080 2 1112 460 338 103 26 chr1 69140782 69141016 -128054416 + B4A SINE B4 41 292 0 2 1112 381 58 0 0 chr1 69143581 69143633 -128051799 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1112 470 296 69 87 chr1 69144483 69144631 -128050801 - B3A SINE B2 0 216 72 2 1112 2125 118 16 0 chr1 69144631 69144953 -128050479 - ORR1A2 LTR MaLR 0 327 1 2 1112 470 316 27 81 chr1 69144953 69145022 -128050410 - B3A SINE B2 -127 71 3 2 1112 351 65 0 0 chr1 69150626 69150672 -128044760 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1112 765 0 0 0 chr1 69153401 69153486 -128041946 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 1112 180 0 0 0 chr1 69153514 69153534 -128041898 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1112 227 114 23 0 chr1 69154640 69154684 -128040748 + (CTCG)n Simple_repeat Simple_repeat 2 46 0 2 1112 231 114 0 0 chr1 69155030 69155065 -128040367 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1112 441 338 130 29 chr1 69159121 69159298 -128036134 - MLT1A0 LTR MaLR -2 372 151 2 1112 599 0 0 14 chr1 69159298 69159370 -128036062 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1112 441 337 118 30 chr1 69159370 69159509 -128035923 - MLT1A0 LTR MaLR -215 150 15 2 1112 28 86 0 0 chr1 69159744 69159814 -128035618 + AT_rich Low_complexity Low_complexity 1 70 0 2 1112 1080 97 0 0 chr1 69160040 69160195 -128035237 + (GAAA)n Simple_repeat Simple_repeat 3 157 0 2 1112 296 48 24 0 chr1 69160195 69160237 -128035195 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 2 1112 259 293 50 25 chr1 69161540 69161659 -128033773 + L1M2 LINE L1 5126 5247 -896 2 1112 438 182 88 88 chr1 69161819 69162000 -128033432 + Lx2B LINE L1 6819 6999 -1 2 1112 230 235 29 0 chr1 69162001 69162069 -128033363 + L1M2 LINE L1 5388 5457 -714 2 1112 289 235 48 56 chr1 69162249 69162375 -128033057 + L1MA5 LINE L1 6154 6278 -22 2 1112 236 318 0 12 chr1 69163106 69163192 -128032240 + (CATA)n Simple_repeat Simple_repeat 4 88 0 2 1112 453 323 68 24 chr1 69166021 69166227 -128029205 + MIR SINE MIR 32 246 -16 2 1112 423 0 0 0 chr1 69166346 69166393 -128029039 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1112 189 0 0 0 chr1 69166740 69166761 -128028671 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2 1112 3567 104 10 0 chr1 69166764 69167274 -128028158 - Lx2 LINE L1 -1 6996 6482 2 1112 329 0 24 0 chr1 69168146 69168187 -128027245 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1112 1155 79 0 0 chr1 69168190 69168367 -128027065 + (CAAGA)n Simple_repeat Simple_repeat 2 178 0 2 1112 2120 310 59 35 chr1 69168486 69168747 -128026685 + Lx7 LINE L1 6159 6410 -1286 2 1112 363 96 0 0 chr1 69168747 69168799 -128026633 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1112 2120 310 59 35 chr1 69168799 69169015 -128026417 + Lx7 LINE L1 6411 6636 -1060 2 1112 215 61 0 29 chr1 69169015 69169049 -128026383 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1112 2120 310 59 35 chr1 69169049 69169536 -128025896 + Lx7 LINE L1 6637 7145 -551 2 1112 282 372 26 7 chr1 69169550 69169704 -128025728 + Lx7 LINE L1 7189 7345 -351 2 1112 333 0 0 0 chr1 69169710 69169747 -128025685 + (GTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1112 612 0 0 0 chr1 69170513 69170581 -128024851 + (TAAA)n Simple_repeat Simple_repeat 4 71 0 2 1112 234 265 0 0 chr1 69171035 69171084 -128024348 + polypurine Low_complexity Low_complexity 3 51 0 2 1112 2311 174 27 10 chr1 69172133 69172545 -128022887 + MTC LTR MaLR 3 421 0 2 1112 540 316 23 72 chr1 69172963 69173012 -128022420 - B4A SINE B4 0 292 250 2 1112 261 0 0 0 chr1 69173012 69173041 -128022391 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1112 540 316 23 72 chr1 69173041 69173298 -128022134 - B4A SINE B4 -43 249 1 2 1112 195 42 0 0 chr1 69174461 69174485 -128020947 + (CAGC)n Simple_repeat Simple_repeat 4 27 0 2 1112 605 321 18 4 chr1 69174529 69174754 -128020678 - Lx8 LINE L1 -541 6932 6705 2 1112 603 292 31 41 chr1 69174777 69174984 -128020448 - B3A SINE B2 -10 206 1 2 1112 327 311 0 0 chr1 69175010 69175116 -128020316 - Lx8 LINE L1 -778 6695 6590 2 1112 364 375 21 0 chr1 69175168 69175312 -128020120 + Lx8 LINE L1 6975 7121 -352 2 1112 246 40 58 39 chr1 69179526 69179578 -128015854 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 2 1112 210 37 0 0 chr1 69179672 69179699 -128015733 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1112 459 182 0 0 chr1 69180125 69180246 -128015186 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 1112 207 0 0 0 chr1 69180958 69180981 -128014451 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1112 222 37 0 0 chr1 69182004 69182031 -128013401 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1112 852 296 0 9 chr1 69182541 69182759 -128012673 - B3 SINE B2 0 216 1 2 1112 394 330 197 11 chr1 69182765 69183221 -128012211 + Helitron1Nb_Mam RC Helitron 183 723 -393 2 1112 199 211 34 34 chr1 69184487 69184546 -128010886 - L3 LINE CR1 -4320 169 111 2 1112 251 72 0 23 chr1 69186714 69186757 -128008675 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 2 1112 333 36 55 0 chr1 69186784 69186839 -128008593 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1112 395 53 35 0 chr1 69187011 69187068 -128008364 + (CACG)n Simple_repeat Simple_repeat 2 60 0 2 1112 229 293 53 0 chr1 69187136 69187211 -128008221 + Tigger9a DNA Tigger 651 729 -3 2 1112 1421 194 39 84 chr1 69187373 69187675 -128007757 + ORR1B2 LTR MaLR 1 294 -73 2 1112 1049 81 11 0 chr1 69187675 69187849 -128007583 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 2 1112 1421 194 39 84 chr1 69187849 69187901 -128007531 + ORR1B2 LTR MaLR 295 339 -28 2 1112 396 0 0 0 chr1 69187901 69187945 -128007487 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1112 267 244 47 153 chr1 69188049 69188199 -128007233 + MLT1E2 LTR MaLR 494 627 0 2 1112 420 20 0 0 chr1 69188940 69188989 -128006443 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1112 627 277 12 19 chr1 69190828 69190990 -128004442 + Lx9 LINE L1 7052 7212 -432 2 1112 383 295 0 35 chr1 69192137 69192253 -128003179 + Lx9 LINE L1 5861 5972 -1672 2 1112 990 132 0 0 chr1 69192369 69192528 -128002904 + (GGGAGA)n Simple_repeat Simple_repeat 4 162 0 2 1112 1271 74 0 6 chr1 69192529 69192706 -128002726 + (GGAGAA)n Simple_repeat Simple_repeat 4 179 0 2 1112 471 165 0 0 chr1 69192706 69192791 -128002641 + GA-rich Low_complexity Low_complexity 49 133 0 2 1112 1160 111 0 6 chr1 69192791 69192972 -128002460 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1112 203 224 0 20 chr1 69193041 69193091 -128002341 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1112 25 51 0 0 chr1 69193092 69193131 -128002301 + AT_rich Low_complexity Low_complexity 1 39 0 2 1112 243 0 0 0 chr1 69193508 69193535 -128001897 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2 1112 5988 235 35 16 chr1 69193541 69194966 -128000466 - Lx6 LINE L1 -145 7551 5835 2 1112 25 51 0 0 chr1 69195004 69195043 -128000389 + AT_rich Low_complexity Low_complexity 1 39 0 2 1112 379 250 83 0 chr1 69196986 69197082 -127998350 - PB1D10 SINE Alu -4 113 10 2 1112 422 344 21 36 chr1 69197519 69197712 -127997720 + Lx8 LINE L1 6805 6994 -479 2 1112 5812 119 86 16 chr1 69197788 69198768 -127996664 + Lx3C LINE L1 5916 6963 -13 2 1112 468 0 0 0 chr1 69198770 69198822 -127996610 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2 1112 230 296 195 5 chr1 69198824 69199014 -127996418 + Lx8 LINE L1 7246 7471 -2 2 1112 405 340 6 43 chr1 69199033 69199196 -127996236 + RSINE1 SINE B4 3 159 -6 2 1112 461 306 37 0 chr1 69199885 69200019 -127995413 - B1F SINE Alu -9 140 2 2 1112 465 19 0 0 chr1 69200019 69200073 -127995359 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1112 496 153 82 0 chr1 69200684 69200782 -127994650 + RMER1C Other Other 134 239 -1103 2 1112 686 137 15 0 chr1 69200806 69200937 -127994495 + GA-rich Low_complexity Low_complexity 1 133 0 2 1112 681 162 86 86 chr1 69200980 69201189 -127994243 - Lx3C LINE L1 -2 6974 6766 2 1112 1338 165 9 107 chr1 69201186 69201512 -127993920 + RMER1C Other Other 1046 1339 -3 2 1112 320 274 0 0 chr1 69201622 69201695 -127993737 - RSINE1 SINE B4 -35 130 58 2 1112 784 151 189 21 chr1 69202135 69202325 -127993107 + URR1B DNA MER1_type 1 222 -3 2 1112 203 79 0 26 chr1 69202384 69202423 -127993009 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1112 252 0 0 0 chr1 69202435 69202463 -127992969 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1112 603 264 124 43 chr1 69202721 69202907 -127992525 - B4A SINE B4 -81 211 11 2 1112 630 256 0 58 chr1 69203555 69203729 -127991703 - RSINE1 SINE B4 0 165 2 2 1112 252 342 57 52 chr1 69204272 69204466 -127990966 + MIR SINE MIR 44 238 -24 2 1112 609 27 0 0 chr1 69204699 69204774 -127990658 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 2 17 3537 216 59 41 chr1 69205850 69206746 -127988686 + RMER1B Other Other 152 1063 -3 3 1113 258 106 0 0 chr1 69207018 69207065 -127988367 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 1113 685 306 40 10 chr1 69207211 69207409 -127988023 + B3 SINE B2 1 204 -12 3 1113 432 0 0 0 chr1 69207414 69207462 -127987970 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 1113 756 204 0 19 chr1 69208011 69208171 -127987261 - B2_Mm2 SINE B2 0 195 39 3 1113 290 94 46 15 chr1 69208202 69208267 -127987165 + CT-rich Low_complexity Low_complexity 1 67 0 3 1113 390 129 0 0 chr1 69208271 69208333 -127987099 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1113 183 100 0 0 chr1 69208333 69208362 -127987070 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1113 821 164 13 46 chr1 69208701 69208717 -127986715 - B1_Mur4 SINE Alu -1 149 138 3 1113 234 0 0 0 chr1 69208717 69208743 -127986689 + (TTG)n Simple_repeat Simple_repeat 1 26 0 3 1113 821 164 13 46 chr1 69208743 69208879 -127986553 - B1_Mur4 SINE Alu -13 137 2 3 1113 192 97 0 0 chr1 69209128 69209159 -127986273 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1113 683 148 3 13 chr1 69209167 69209293 -127986139 - B1_Mm SINE Alu 0 120 1 3 1113 3058 82 2 47 chr1 69209302 69209749 -127985683 - L1_Mus2 LINE L1 -2 6564 6138 3 1113 7052 76 11 1 chr1 69209750 69211027 -127984405 + L1_Mus2 LINE L1 4894 6184 -382 3 1113 782 288 60 15 chr1 69211342 69211610 -127983822 - B4A SINE B4 -7 285 6 3 1113 1240 128 0 5 chr1 69212922 69213110 -127982322 + B2_Mm2 SINE B2 1 187 -8 3 1113 428 315 23 96 chr1 69213465 69213683 -127981749 - MTEa LTR MaLR -8 371 170 3 1113 2081 223 39 74 chr1 69213727 69214270 -127981162 + RMER19C LTR ERVK 88 611 0 3 1113 567 339 62 0 chr1 69214270 69214436 -127980996 - MTEa LTR MaLR -202 177 1 3 1113 4370 18 0 0 chr1 69214467 69214966 -127980466 - L1Md_A LINE L1 0 6582 6084 3 1113 7141 10 0 0 chr1 69214966 69215898 -127979534 + L1Md_A LINE L1 5080 6011 -571 3 1113 38 0 0 0 chr1 69217376 69217414 -127978018 + AT_rich Low_complexity Low_complexity 1 38 0 3 1113 1864 160 144 3 chr1 69218558 69218927 -127976505 - MTC LTR MaLR 0 421 1 3 1113 589 284 77 43 chr1 69219074 69219414 -127976018 + MTEb LTR MaLR 1 343 -36 3 1113 1094 255 124 18 chr1 69219383 69219825 -127975607 - RLTR16 LTR ERVK -10 495 7 3 1113 699 279 11 16 chr1 69219828 69220017 -127975415 + MTEb LTR MaLR 192 379 0 3 1113 587 302 20 38 chr1 69220194 69220422 -127975010 + Lx8 LINE L1 6567 6932 -712 3 1113 322 222 81 1 chr1 69220717 69220805 -127974627 + Lx7 LINE L1 7611 7693 -3 3 1113 801 180 20 41 chr1 69220966 69221163 -127974269 - Lx9 LINE L1 -535 7109 6917 3 1113 706 283 50 0 chr1 69221393 69221591 -127973841 + B3 SINE B2 1 208 -8 3 1113 2714 270 99 12 chr1 69221807 69222214 -127973218 + Lx6 LINE L1 6205 6910 -550 3 1113 797 0 11 0 chr1 69222214 69222307 -127973125 + (GA)n Simple_repeat Simple_repeat 2 95 0 3 1113 2714 269 112 12 chr1 69222307 69222819 -127972613 + Lx6 LINE L1 6911 7434 -26 3 1113 653 45 0 22 chr1 69222827 69222917 -127972515 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 3 1113 381 188 42 67 chr1 69223022 69223142 -127972290 - Lx8 LINE L1 0 7473 7357 3 1113 323 202 12 0 chr1 69223585 69223669 -127971763 + (TATG)n Simple_repeat Simple_repeat 1 85 0 3 1113 1691 291 101 88 chr1 69223691 69224540 -127970892 - RMER13A LTR ERVK 0 860 1 3 1113 857 311 61 40 chr1 69224540 69224818 -127970614 - B4 SINE B4 -8 284 1 3 1113 26 50 0 0 chr1 69224880 69224920 -127970512 + AT_rich Low_complexity Low_complexity 1 40 0 3 1113 261 0 0 0 chr1 69224999 69225028 -127970404 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1113 369 0 0 0 chr1 69225366 69225407 -127970025 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1113 21 36 0 0 chr1 69226212 69226240 -127969192 + AT_rich Low_complexity Low_complexity 1 28 0 3 1113 808 307 85 4 chr1 69227002 69227283 -127968149 + MER68 LTR ERVL 3 306 -257 3 1113 292 277 61 41 chr1 69227286 69227384 -127968048 - ORR1E LTR MaLR -5 354 255 3 1113 219 232 36 0 chr1 69227711 69227767 -127967665 + CT-rich Low_complexity Low_complexity 3 60 0 3 1113 289 312 214 8 chr1 69227808 69227934 -127967498 - B4A SINE B4 -14 278 127 3 1113 296 286 0 13 chr1 69227932 69228010 -127967422 - B3A SINE B2 -114 84 8 3 1113 340 321 174 15 chr1 69228042 69228238 -127967194 + LTR50 LTR ERVL 46 272 -523 3 1113 405 0 0 0 chr1 69228265 69228310 -127967122 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1113 244 137 0 19 chr1 69228409 69228461 -127966971 - Lx8 LINE L1 -2 7471 7421 3 1113 401 256 96 69 chr1 69228537 69228797 -127966635 + L1MA7 LINE L1 5517 5783 -529 3 1113 34 24 0 0 chr1 69228975 69229016 -127966416 + AT_rich Low_complexity Low_complexity 1 41 0 3 1113 258 287 66 0 chr1 69229106 69229228 -127966204 + L1MA7 LINE L1 5894 6023 -268 3 1113 1411 196 124 18 chr1 69229286 69229624 -127965808 - ORR1D1 LTR MaLR 0 374 1 3 1113 845 195 12 0 chr1 69229626 69229790 -127965642 - ORR1D1-int LTR MaLR -6 1364 1199 3 1113 432 338 0 0 chr1 69229792 69229937 -127965495 + RMER1A Other Other 20 164 -866 3 1113 1673 151 60 10 chr1 69229976 69230290 -127965142 + Lx2 LINE L1 6662 6991 -6 3 1113 656 56 11 0 chr1 69231455 69231544 -127963888 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 1113 694 324 28 0 chr1 69231571 69231784 -127963648 - B4A SINE B4 -60 232 14 3 1113 26 0 0 0 chr1 69231826 69231852 -127963580 + AT_rich Low_complexity Low_complexity 1 26 0 3 1113 240 288 0 17 chr1 69232134 69232194 -127963238 + MIRc SINE MIR 90 148 -120 3 1113 1217 250 43 109 chr1 69232277 69232477 -127962955 + MTE2b LTR MaLR 3 166 -213 3 1113 2926 33 11 3 chr1 69232477 69232839 -127962593 + L1Md_F3 LINE L1 6220 6584 0 3 1113 1217 250 43 109 chr1 69232839 69233033 -127962399 + MTE2b LTR MaLR 167 370 -9 3 1113 29 28 0 0 chr1 69233921 69233957 -127961475 + AT_rich Low_complexity Low_complexity 1 36 0 3 1113 236 262 0 43 chr1 69233995 69234095 -127961337 + A-rich Low_complexity Low_complexity 1 95 0 3 1113 2792 35 9 0 chr1 69234375 69234715 -127960717 + L1Md_F2 LINE L1 6231 6573 -9 3 1113 23 0 0 0 chr1 69234854 69234877 -127960555 + AT_rich Low_complexity Low_complexity 1 23 0 3 1113 3119 46 5 0 chr1 69235912 69236307 -127959125 - L1Md_F2 LINE L1 -133 5750 5354 3 1113 6362 66 2 4 chr1 69236307 69237133 -127958299 + L1Md_F2 LINE L1 5746 6570 -12 3 1113 36454 13 3 7 chr1 69238082 69243488 -127951944 + L1Md_A LINE L1 208 5586 -297 3 1113 8884 12 0 0 chr1 69243488 69244483 -127950949 + L1Md_A LINE L1 5587 6581 -1 3 1113 1188 232 78 17 chr1 69245226 69245498 -127949934 + Lx9 LINE L1 7136 7434 -210 3 1113 600 14 0 0 chr1 69245498 69245567 -127949865 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1113 1188 232 78 17 chr1 69245567 69245654 -127949778 + Lx9 LINE L1 7435 7517 -127 3 1113 244 325 81 11 chr1 69246168 69246255 -127949177 + LTR16E2 LTR ERVL 265 357 -211 3 1113 190 286 24 61 chr1 69246713 69246795 -127948637 - L2c LINE L2 -72 3315 3237 3 1113 459 0 0 0 chr1 69247279 69247330 -127948102 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1113 706 242 6 19 chr1 69247435 69247591 -127947841 - ORR1D2 LTR MaLR -9 361 208 3 1113 2046 215 54 24 chr1 69247593 69248331 -127947101 - Lx4B LINE L1 -29 6971 6191 3 1113 267 191 76 0 chr1 69248349 69248480 -127946952 + (TA)n Simple_repeat Simple_repeat 2 142 0 3 1113 595 284 0 0 chr1 69248963 69249104 -127946328 + B1_Mur1 SINE Alu 1 141 -8 3 1113 551 56 78 0 chr1 69250609 69250699 -127944733 + L1Md_F3 LINE L1 6474 6570 -14 3 1113 884 140 98 24 chr1 69250854 69250965 -127944467 - Lx2 LINE L1 0 6997 6884 3 1113 245 0 0 82 chr1 69250965 69251014 -127944418 + (CCCA)n Simple_repeat Simple_repeat 1 45 0 3 1113 884 140 98 24 chr1 69251014 69251107 -127944325 - Lx2 LINE L1 -114 6883 6780 3 1113 344 348 97 6 chr1 69251320 69251485 -127943947 + RCHARR1 DNA MER1_type 46 225 -749 3 1113 878 189 27 0 chr1 69251531 69251716 -127943716 + RCHARR1 DNA MER1_type 371 560 -414 3 1113 1133 216 72 46 chr1 69251730 69252075 -127943357 + RCHARR1 DNA MER1_type 614 967 -7 3 1113 680 221 0 0 chr1 69252400 69252527 -127942905 + B1_Mur3 SINE Alu 14 140 -9 3 1113 235 0 57 0 chr1 69252957 69252992 -127942440 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 3 1113 755 69 0 0 chr1 69252992 69253094 -127942338 - B1_Mus2 SINE Alu 0 147 46 3 1113 265 194 91 65 chr1 69253027 69253104 -127942328 - MT2B LTR ERVL -337 264 186 3 1113 225 357 187 18 chr1 69253124 69253455 -127941977 + MER74B LTR ERVL 125 511 -111 3 1113 301 336 0 56 chr1 69253784 69253910 -127941522 + MER57D LTR ERV1 287 405 -6 3 1113 1075 97 7 0 chr1 69254830 69254975 -127940457 + B1_Mus1 SINE Alu 2 147 -1 3 1113 886 309 72 10 chr1 69258795 69259102 -127936330 - MLT1A1 LTR MaLR 0 408 83 3 1113 22 0 0 0 chr1 69259177 69259199 -127936233 + AT_rich Low_complexity Low_complexity 1 22 0 3 1113 264 316 99 27 chr1 69259324 69259447 -127935985 - L2a LINE L2 -3 3423 3242 3 1113 1005 247 113 31 chr1 69261392 69261747 -127933685 - MTE2a LTR MaLR -14 405 25 3 1113 378 0 0 0 chr1 69262286 69262328 -127933104 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1113 406 144 211 0 chr1 69262677 69262781 -127932651 - Lx2 LINE L1 -1 6996 6871 3 1113 201 323 102 35 chr1 69263246 69263407 -127932025 + MIRc SINE MIR 44 215 -53 3 1113 540 0 0 0 chr1 69263553 69263613 -127931819 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 3 1113 195 100 0 0 chr1 69264298 69264328 -127931104 + (CATG)n Simple_repeat Simple_repeat 1 30 0 3 1113 240 188 0 0 chr1 69264333 69264402 -127931030 + GA-rich Low_complexity Low_complexity 2 70 0 3 1113 569 14 0 14 chr1 69264652 69264723 -127930709 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 3 1113 261 0 0 0 chr1 69264729 69264758 -127930674 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1113 21 36 0 0 chr1 69264811 69264839 -127930593 + AT_rich Low_complexity Low_complexity 1 28 0 3 1113 307 260 0 25 chr1 69264844 69264923 -127930509 - ID4_ SINE ID -3 80 4 3 1113 29 28 0 0 chr1 69265755 69265791 -127929641 + AT_rich Low_complexity Low_complexity 1 36 0 3 1113 495 0 0 0 chr1 69266308 69266363 -127929069 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1113 2195 152 65 20 chr1 69266850 69267253 -127928179 - MTC LTR MaLR 0 421 1 3 1113 567 0 0 0 chr1 69267360 69267423 -127928009 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1113 1267 216 43 46 chr1 69267423 69267768 -127927664 + RLTR10D LTR ERVK 8 351 -8 4 1113 7438 258 18 23 chr1 69267775 69269970 -127925462 + IAP-d-int LTR ERVK 1 2184 -4358 4 1113 6281 274 17 15 chr1 69269983 69272184 -127923248 + IAP-d-int LTR ERVK 3190 5394 -1148 4 1113 3049 256 19 26 chr1 69272223 69273258 -127922174 + IAP-d-int LTR ERVK 5394 6967 -713 4 1113 1965 185 8 8 chr1 69273339 69273704 -127921728 + IAP-d-int LTR ERVK 6178 6542 0 4 1113 1376 192 42 42 chr1 69273704 69274063 -127921369 + RLTR10D LTR ERVK 1 359 0 4 1113 201 39 0 0 chr1 69274073 69274099 -127921333 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1113 585 142 0 0 chr1 69274099 69274226 -127921206 + (GA)n Simple_repeat Simple_repeat 2 128 0 4 1113 261 250 22 33 chr1 69274348 69274439 -127920993 + BLACKJACK DNA AcHobo 2849 2938 -6 4 1113 458 352 43 26 chr1 69275305 69275538 -127919894 + LTR33B LTR ERVL 85 321 -182 4 1113 378 336 87 22 chr1 69276132 69276363 -127919069 - MIR SINE MIR -2 260 15 4 1113 226 304 135 5 chr1 69276421 69276606 -127918826 + L1M3 LINE L1 5674 5882 -298 4 1113 728 131 80 0 chr1 69277464 69277601 -127917831 - RMER1B Other Other -247 819 672 4 1113 685 291 18 83 chr1 69277640 69277869 -127917563 - MTEa LTR MaLR -165 214 1 4 1113 33820 35 1 0 chr1 69278007 69284096 -127911336 + L1Md_T LINE L1 1 5589 -297 4 1113 8968 8 0 0 chr1 69284096 69285092 -127910340 + L1Md_T LINE L1 5590 6585 0 4 1113 1210 261 84 15 chr1 69286100 69286434 -127908998 + ORR1D2 LTR MaLR 1 357 -13 4 1113 411 331 116 95 chr1 69287099 69287383 -127908049 + B4A SINE B4 3 292 0 4 1113 315 0 0 0 chr1 69287983 69288018 -127907414 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1113 738 78 0 0 chr1 69288018 69288132 -127907300 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 1113 556 271 50 37 chr1 69288141 69288302 -127907130 + RSINE1 SINE B4 3 165 0 4 1113 202 158 26 0 chr1 69288302 69288340 -127907092 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1113 270 311 18 45 chr1 69289069 69289180 -127906252 + MIR SINE MIR 59 166 -96 4 1113 205 162 0 0 chr1 69289204 69289241 -127906191 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1113 228 283 76 42 chr1 69290209 69290327 -127905105 + Charlie1b DNA MER1_type 384 505 -18 4 1113 516 296 107 0 chr1 69290731 69290890 -127904542 - B4 SINE B4 -76 216 41 4 1113 426 316 62 22 chr1 69291109 69291384 -127904048 + B4A SINE B4 3 288 -4 4 1113 189 74 0 0 chr1 69291463 69291490 -127903942 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1113 1401 38 0 0 chr1 69293405 69293615 -127901817 + (TG)n Simple_repeat Simple_repeat 1 210 0 4 1113 261 0 0 0 chr1 69294707 69294736 -127900696 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1113 555 88 0 0 chr1 69295782 69295873 -127899559 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1113 771 228 14 0 chr1 69296970 69297115 -127898317 + B1_Mur2 SINE Alu 2 148 -1 4 1113 360 312 62 31 chr1 69297154 69297316 -127898116 + MER2 DNA MER2_type 86 252 -93 4 1113 222 91 0 0 chr1 69297461 69297494 -127897938 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1113 590 276 5 75 chr1 69298990 69299190 -127896242 - MER5A DNA MER1_type -3 186 1 4 1113 5383 88 17 39 chr1 69299818 69300456 -127894976 - L1_Mus3 LINE L1 -15 6623 6003 4 1113 433 118 287 11 chr1 69300456 69300550 -127894882 - PB1D9 SINE Alu 0 120 1 4 1113 5383 88 17 39 chr1 69300550 69300729 -127894703 - L1_Mus3 LINE L1 -636 6002 5824 4 1113 503 383 5 10 chr1 69300737 69300935 -127894497 - B3A SINE B2 0 198 2 4 1113 715 225 7 14 chr1 69300999 69301143 -127894289 + B1_Mur1 SINE Alu 1 143 -6 4 1113 1445 284 29 3 chr1 69301481 69301830 -127893602 + MTEa LTR MaLR 20 377 -2 4 1113 23 33 0 0 chr1 69301870 69301900 -127893532 + AT_rich Low_complexity Low_complexity 1 30 0 4 1113 423 56 0 0 chr1 69302972 69303026 -127892406 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 4 1113 320 304 26 45 chr1 69303030 69303185 -127892247 + Lx8 LINE L1 6191 6342 -1131 4 1113 799 333 27 19 chr1 69303190 69303600 -127891832 + Lx8 LINE L1 6905 7317 -156 4 1113 687 224 7 47 chr1 69303641 69303791 -127891641 + B1_Mur2 SINE Alu 4 147 -2 4 1113 33165 71 5 18 chr1 69303806 69309487 -127885945 + L1Md_F2 LINE L1 631 6224 -358 4 1113 46 19 0 0 chr1 69309554 69309607 -127885825 + AT_rich Low_complexity Low_complexity 1 53 0 4 1113 192 319 29 0 chr1 69309821 69309890 -127885542 - MIR SINE MIR -64 144 74 4 1113 431 278 28 0 chr1 69310374 69310482 -127884950 + PB1D7 SINE Alu 1 111 -9 4 1113 625 296 34 67 chr1 69311973 69312270 -127883162 + B4A SINE B4 4 290 -2 4 1113 573 15 0 0 chr1 69312307 69312373 -127883059 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1113 2294 211 74 16 chr1 69312598 69313113 -127882319 + RMER15 LTR ERVL 31 575 0 4 1113 587 307 29 15 chr1 69313113 69313318 -127882114 + B3 SINE B2 4 211 -5 4 1113 195 132 0 0 chr1 69313333 69313346 -127882086 + (TAAAAA)n Simple_repeat Simple_repeat 3 15 0 4 1113 1001 131 0 0 chr1 69313346 69313491 -127881941 + B1_Mus2 SINE Alu 3 147 0 4 1113 195 132 0 0 chr1 69313491 69313515 -127881917 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1113 328 315 22 0 chr1 69313655 69313744 -127881688 + RSINE1 SINE B4 3 93 -72 4 1113 486 70 0 0 chr1 69313766 69313837 -127881595 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1113 294 300 88 0 chr1 69313863 69313943 -127881489 - B1F SINE Alu -51 98 12 4 1113 3139 185 88 2 chr1 69314434 69315045 -127880387 - Lx5 LINE L1 -3 7047 6384 4 1113 5873 55 19 5 chr1 69315057 69315801 -127879631 - L1Md_F2 LINE L1 -11 6571 5818 4 1113 771 139 121 42 chr1 69316470 69316635 -127878797 - Lx2B LINE L1 -229 6771 6594 4 1113 433 180 317 0 chr1 69316623 69316727 -127878705 + Lx2A1 LINE L1 6794 6931 -77 4 1113 207 0 0 0 chr1 69316727 69316750 -127878682 + (GGATG)n Simple_repeat Simple_repeat 4 26 0 4 1113 433 180 317 0 chr1 69316750 69316806 -127878626 + Lx2A1 LINE L1 6932 7004 -4 4 1113 237 178 0 0 chr1 69317720 69317765 -127877667 + G-rich Low_complexity Low_complexity 2 46 0 4 1113 1091 112 6 0 chr1 69317808 69317978 -127877454 + (GGGAA)n Simple_repeat Simple_repeat 1 171 0 4 1113 385 233 111 19 chr1 69318337 69318473 -127876959 - MTE2a LTR MaLR 0 419 254 4 1113 406 175 196 12 chr1 69318475 69318643 -127876789 + Lx9 LINE L1 7438 7636 -8 4 1113 443 344 27 67 chr1 69318680 69318948 -127876484 - MTE2a LTR MaLR -149 230 1 4 1113 21 0 0 0 chr1 69319842 69319863 -127875569 + AT_rich Low_complexity Low_complexity 1 21 0 4 1113 793 308 98 0 chr1 69320015 69320281 -127875151 + B4A SINE B4 1 292 0 4 1113 288 0 0 0 chr1 69320288 69320320 -127875112 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1113 756 152 40 62 chr1 69321304 69321480 -127873952 - URR1A DNA MER1_type -3 223 52 4 1113 1161 248 39 45 chr1 69321692 69322003 -127873429 + Lx6 LINE L1 7082 7391 -69 4 1113 2091 106 61 3 chr1 69322003 69322314 -127873118 - ORR1A4 LTR MaLR 0 329 1 4 1113 1161 248 39 45 chr1 69322314 69322357 -127873075 + Lx6 LINE L1 7392 7434 -26 4 1113 1115 272 61 41 chr1 69324399 69324744 -127870688 - MTEa LTR MaLR -10 369 18 4 1113 8267 28 3 11 chr1 69325891 69326879 -127868553 + L1Md_F3 LINE L1 5602 6581 -3 4 1113 273 214 18 0 chr1 69327013 69327069 -127868363 - ID4_ SINE ID -23 60 4 4 1113 245 75 25 0 chr1 69327370 69327410 -127868022 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 1113 224 154 19 0 chr1 69327410 69327462 -127867970 + CT-rich Low_complexity Low_complexity 2 54 0 4 1113 3445 57 0 2 chr1 69329280 69329720 -127865712 - L1Md_F2 LINE L1 0 6582 6144 4 1113 524 294 56 11 chr1 69330801 69330980 -127864452 - Lx8 LINE L1 -131 7342 7156 4 1113 300 120 0 0 chr1 69331024 69331074 -127864358 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1113 358 284 80 22 chr1 69332145 69332282 -127863150 - L2a LINE L2 0 3426 3282 4 1113 279 79 0 0 chr1 69333308 69333346 -127862086 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1113 3626 221 53 54 chr1 69334483 69335522 -127859910 + Lx7 LINE L1 6500 7537 -159 4 1113 601 226 65 58 chr1 69335637 69335921 -127859511 + Lx9 LINE L1 5781 6053 -1591 4 1113 588 29 0 0 chr1 69336279 69336349 -127859083 + (TTTTC)n Simple_repeat Simple_repeat 5 74 0 4 1114 326 70 40 27 chr1 69337348 69337361 -127858071 + (CAAAA)n Simple_repeat Simple_repeat 2 13 0 4 1114 1053 90 28 0 chr1 69337361 69337505 -127857927 + B1_Mus1 SINE Alu 1 148 0 4 1114 326 70 40 27 chr1 69337505 69337565 -127857867 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 4 1114 216 191 0 0 chr1 69337767 69337814 -127857618 + A-rich Low_complexity Low_complexity 1 47 0 4 1114 333 309 36 36 chr1 69338409 69338577 -127856855 + L1ME1 LINE L1 4547 4714 -1432 4 1114 27 62 0 0 chr1 69338577 69338625 -127856807 + AT_rich Low_complexity Low_complexity 1 48 0 4 1114 228 316 26 0 chr1 69338688 69338802 -127856630 + (TA)n Simple_repeat Simple_repeat 2 118 0 4 1114 332 180 77 51 chr1 69338819 69338936 -127856496 - L1MA8 LINE L1 -27 6264 6145 4 1114 319 282 89 18 chr1 69338938 69339050 -127856382 + L1M2 LINE L1 5167 5286 -857 4 1114 673 238 14 20 chr1 69339210 69339356 -127856076 - B1_Mus2 SINE Alu -1 146 2 4 1114 251 283 58 8 chr1 69339374 69339495 -127855937 - L1MA8 LINE L1 -346 5945 5819 4 1114 2434 300 60 27 chr1 69339509 69340629 -127854803 - Lx9 LINE L1 -127 7517 6361 4 1114 461 271 0 8 chr1 69340619 69340738 -127854694 + Lx9 LINE L1 5854 5971 -1673 4 1114 271 304 103 8 chr1 69340955 69341081 -127854351 + MLT1A1 LTR MaLR 1 138 -270 4 1114 396 317 78 14 chr1 69341195 69341336 -127854096 + MLT1A1 LTR MaLR 259 408 0 4 1114 279 0 0 0 chr1 69341341 69341372 -127854060 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1114 1032 195 13 22 chr1 69341850 69342076 -127853356 + URR1A DNA MER1_type 2 225 -1 4 1114 554 325 71 0 chr1 69342078 69342232 -127853200 + B3A SINE B2 4 168 -30 4 1114 413 316 43 63 chr1 69342270 69342715 -127852717 + L1ME1 LINE L1 5434 5869 -310 4 1114 300 216 303 21 chr1 69342750 69342892 -127852540 + B3A SINE B2 1 182 -16 4 1114 322 297 53 75 chr1 69343182 69343408 -127852024 - MER2 DNA MER2_type -53 292 72 4 1114 822 186 0 14 chr1 69343725 69343867 -127851565 + B1_Mus1 SINE Alu 3 142 -6 4 1114 459 0 0 0 chr1 69343868 69343919 -127851513 + (TAA)n Simple_repeat Simple_repeat 3 53 0 5 1114 227 315 68 0 chr1 69344050 69344123 -127851309 - B1_Mus1 SINE Alu -56 92 15 5 1114 476 268 68 44 chr1 69344124 69344412 -127851020 - ORR1D2 LTR MaLR 0 379 1 5 1114 1980 241 83 30 chr1 69344412 69344935 -127850497 - MTE-int LTR MaLR -53 1527 976 5 1114 887 245 5 33 chr1 69344988 69345203 -127850229 - ORR1E LTR MaLR -150 209 1 5 1114 289 289 0 13 chr1 69345278 69345355 -127850077 + B4 SINE B4 3 78 -214 5 1114 996 214 263 4 chr1 69345356 69345637 -127849795 + ORR1D1 LTR MaLR 21 374 0 5 1114 320 336 43 98 chr1 69345637 69345868 -127849564 + B4A SINE B4 75 292 0 5 1114 227 260 0 0 chr1 69346897 69346947 -127848485 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1114 326 80 20 0 chr1 69348291 69348341 -127847091 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1114 316 386 0 0 chr1 69348424 69348512 -127846920 - PB1D7 SINE Alu -32 88 1 5 1114 606 28 0 0 chr1 69348657 69348729 -127846703 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1114 457 246 12 0 chr1 69349754 69349925 -127845507 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 1114 216 184 0 0 chr1 69349945 69349994 -127845438 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1114 746 152 6 0 chr1 69350068 69350226 -127845206 + (TG)n Simple_repeat Simple_repeat 2 160 0 5 1114 291 279 11 11 chr1 69354639 69354726 -127840706 - PB1D7 SINE Alu 0 120 34 5 1114 566 378 63 16 chr1 69356022 69356463 -127838969 + MT2A LTR ERVL 1 462 -71 5 1114 465 165 0 0 chr1 69356774 69356853 -127838579 - L1_Mur3 LINE L1 -7354 358 280 5 1114 285 51 0 0 chr1 69357401 69357440 -127837992 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1114 513 0 0 0 chr1 69357440 69357496 -127837936 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1114 22 0 0 0 chr1 69358129 69358151 -127837281 + AT_rich Low_complexity Low_complexity 1 22 0 5 1114 192 77 0 0 chr1 69358221 69358247 -127837185 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 5 1114 488 175 40 30 chr1 69358247 69358338 -127837094 - B1_Mm SINE Alu -9 138 45 5 1114 371 205 12 24 chr1 69358531 69358616 -127836816 - MER74A LTR ERVL -1 557 474 5 1114 1239 301 53 2 chr1 69358617 69359090 -127836342 + Lx8 LINE L1 6584 7080 -393 5 1114 300 366 52 30 chr1 69360333 69360564 -127834868 - L2a LINE L2 0 3426 3191 5 1114 234 306 158 31 chr1 69361520 69361780 -127833652 + L2 LINE L2 2024 2316 -1103 5 1114 407 184 11 54 chr1 69361796 69361888 -127833544 - MTEb LTR MaLR -6 373 286 5 1114 2653 151 82 7 chr1 69361890 69362344 -127833088 + RMER15 LTR ERVL 83 570 -5 5 1114 671 252 14 7 chr1 69362340 69362484 -127832948 - MTEb LTR MaLR -234 145 1 5 1114 283 350 102 16 chr1 69362505 69362620 -127832812 + L2 LINE L2 2376 2493 -926 5 1114 306 106 0 0 chr1 69362620 69362667 -127832765 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1114 283 350 102 16 chr1 69362667 69362737 -127832695 + L2 LINE L2 2494 2576 -843 5 1114 6502 68 21 9 chr1 69363048 69363907 -127831525 + L1Md_F2 LINE L1 5710 6578 -4 5 1114 269 295 12 27 chr1 69363954 69364046 -127831386 - ORR1E LTR MaLR -3 367 272 5 1114 1047 104 46 0 chr1 69364060 69364233 -127831199 - L1Md_F2 LINE L1 -536 6046 5866 5 1114 3812 91 12 0 chr1 69364234 69364753 -127830679 + L1_Mus1 LINE L1 6043 6567 0 5 1114 441 273 141 0 chr1 69365035 69365163 -127830269 - MER3 DNA MER1_type -63 146 1 5 1114 294 106 0 0 chr1 69366869 69366916 -127828516 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1114 265 307 81 106 chr1 69367135 69367419 -127828013 + B4A SINE B4 3 279 -13 5 1114 1379 229 29 48 chr1 69367705 69368081 -127827351 + ORR1D2 LTR MaLR 2 370 0 5 1114 4704 74 26 0 chr1 69368135 69368782 -127826650 - L1Md_F2 LINE L1 -197 5686 5023 5 1114 6704 64 6 8 chr1 69368782 69369663 -127825769 + L1Md_F2 LINE L1 5703 6581 -1 5 1114 221 361 44 44 chr1 69369783 69369896 -127825536 + PB1 SINE Alu 13 125 -2 5 1114 600 291 64 0 chr1 69370496 69370524 -127824908 - B3A SINE B2 -6 192 165 5 1114 453 19 0 0 chr1 69370524 69370578 -127824854 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1114 600 291 64 0 chr1 69370578 69370721 -127824711 - B3A SINE B2 -34 164 11 5 1114 1141 82 7 0 chr1 69370938 69371085 -127824347 + B1_Mus1 SINE Alu 1 148 0 5 1114 294 304 26 0 chr1 69371553 69371668 -127823764 - L1ME3A LINE L1 -13 6160 6043 5 1114 494 18 184 0 chr1 69372767 69372881 -127822551 + (CATAT)n Simple_repeat Simple_repeat 1 135 0 5 1114 570 298 78 7 chr1 69372930 69373214 -127822218 + L1M5 LINE L1 4626 4929 -1217 5 1114 576 308 42 0 chr1 69374202 69374345 -127821087 - RSINE1 SINE B4 -14 151 3 5 1114 202 333 119 57 chr1 69374378 69374588 -127820844 - MIRb SINE MIR -45 223 1 5 1114 399 300 158 54 chr1 69374791 69375069 -127820363 + MER2 DNA MER2_type 24 339 -6 5 1114 375 333 39 22 chr1 69375112 69375290 -127820142 + MIRb SINE MIR 31 211 -57 5 1114 1429 51 0 6 chr1 69375299 69375475 -127819957 - B2_Mm2 SINE B2 -19 176 2 5 1114 1942 73 0 0 chr1 69376970 69377245 -127818187 - L1_Mm LINE L1 -2032 3851 3577 5 1114 5243 76 10 16 chr1 69377245 69377954 -127817478 + L1Md_F2 LINE L1 5864 6568 -14 5 1114 378 171 0 0 chr1 69379102 69379172 -127816260 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1114 215 354 67 52 chr1 69380177 69380311 -127815121 + L2b LINE L2 3239 3374 -1 5 1114 250 132 38 0 chr1 69380415 69380468 -127814964 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 5 1114 627 147 0 0 chr1 69380762 69380878 -127814554 + (TG)n Simple_repeat Simple_repeat 2 117 0 5 1114 434 247 0 20 chr1 69382080 69382179 -127813253 - MTEb LTR MaLR 0 379 283 5 1114 981 267 94 22 chr1 69382187 69382505 -127812927 - MTE-int LTR MaLR -479 1101 761 5 1114 364 319 0 96 chr1 69382581 69382706 -127812726 + PB1D7 SINE Alu 3 115 -5 5 1114 2797 194 74 32 chr1 69382710 69383356 -127812076 - RMER1B Other Other -24 1042 370 5 1114 786 246 27 0 chr1 69383386 69383573 -127811859 + B3A SINE B2 1 192 -6 5 1114 1373 320 95 18 chr1 69383619 69384167 -127811265 - MTE-int LTR MaLR -924 656 67 5 1114 613 347 49 45 chr1 69384345 69384568 -127810864 - B4A SINE B4 -68 224 1 5 1114 308 289 42 50 chr1 69384568 69384671 -127810761 - B4 SINE B4 -62 230 129 5 1114 358 250 89 0 chr1 69384694 69384806 -127810626 - MTEa LTR MaLR -8 371 250 5 1114 765 138 0 0 chr1 69384954 69385084 -127810348 - Lx2 LINE L1 -4 6993 6864 5 1114 2104 175 54 17 chr1 69386188 69386594 -127808838 + MTC LTR MaLR 1 421 0 5 1114 259 261 14 14 chr1 69386702 69386772 -127808660 - ID4_ SINE ID -13 70 1 5 1114 304 333 43 0 chr1 69387563 69387680 -127807752 + MTD LTR MaLR 25 146 -273 5 1114 624 272 29 12 chr1 69387686 69387857 -127807575 + MTD LTR MaLR 6 179 -240 5 1114 939 71 0 0 chr1 69388271 69388412 -127807020 + (CA)n Simple_repeat Simple_repeat 2 142 0 5 1114 360 0 0 0 chr1 69388412 69388451 -127806981 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1114 1218 254 45 48 chr1 69388693 69389003 -127806429 + MTE2b LTR MaLR 3 311 -68 5 1114 236 384 92 15 chr1 69389321 69389527 -127805905 + MIRb SINE MIR 6 227 -41 5 1114 375 372 75 29 chr1 69389834 69390075 -127805357 + MIRc SINE MIR 4 255 -13 5 1114 6124 103 18 6 chr1 69390769 69391645 -127803787 - Lx3A LINE L1 -10 6971 6085 5 1114 572 318 36 8 chr1 69392663 69392864 -127802568 - B3A SINE B2 0 216 9 5 1114 1077 305 11 53 chr1 69393267 69393627 -127801805 + MLT1A0 LTR MaLR 2 346 -19 5 1114 233 325 78 6 chr1 69394358 69394525 -127800907 + L2b LINE L2 3219 3424 -2 5 1114 253 325 52 0 chr1 69394896 69394973 -127800459 + B4 SINE B4 1 81 -211 5 1114 299 75 0 54 chr1 69395220 69395276 -127800156 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1114 333 47 0 0 chr1 69395515 69395558 -127799874 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 1114 202 263 0 17 chr1 69395683 69395741 -127799691 + MIR SINE MIR 174 230 -32 5 1114 23 78 0 0 chr1 69396942 69396993 -127798439 + AT_rich Low_complexity Low_complexity 1 51 0 5 1114 251 330 25 50 chr1 69397439 69397560 -127797872 - LTR90B LTR LTR -542 254 137 5 1114 306 0 0 0 chr1 69398132 69398166 -127797266 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1114 396 227 0 0 chr1 69399935 69400085 -127795347 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 1114 774 205 0 0 chr1 69400226 69400353 -127795079 + B1_Mur2 SINE Alu 1 127 -22 5 1114 398 333 0 96 chr1 69400353 69400372 -127795060 + ID_B1 SINE B4 82 213 -11 5 1114 621 219 0 0 chr1 69400412 69400567 -127794865 + (TA)n Simple_repeat Simple_repeat 2 156 0 5 1114 756 184 0 0 chr1 69401123 69401270 -127794162 + (TA)n Simple_repeat Simple_repeat 2 148 0 5 1114 906 171 45 0 chr1 69401303 69401479 -127793953 + URR1A DNA MER1_type 43 226 0 5 1114 1030 282 78 22 chr1 69401631 69401995 -127793437 + MTD LTR MaLR 17 407 0 5 1114 1410 252 121 60 chr1 69401995 69403012 -127792420 + MTD-int LTR MaLR 1 1257 -1 5 1114 997 280 71 11 chr1 69403108 69403390 -127792042 + MTD LTR MaLR 120 418 -1 5 1114 567 0 0 0 chr1 69405172 69405235 -127790197 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1114 489 281 113 72 chr1 69405242 69405507 -127789925 - MLT1B LTR MaLR -108 282 7 5 1114 281 291 137 0 chr1 69405755 69405936 -127789496 - MIRb SINE MIR -44 224 8 5 1114 720 298 46 53 chr1 69407468 69407834 -127787598 + MTE2b LTR MaLR 1 379 0 5 1114 574 353 85 7 chr1 69407926 69408231 -127787201 - MLT1A1 LTR MaLR 0 408 80 5 1114 932 283 119 35 chr1 69408247 69408631 -127786801 + MTD LTR MaLR 1 383 -36 5 1114 891 228 46 5 chr1 69409087 69409281 -127786151 + B3 SINE B2 15 216 0 5 1114 324 250 24 40 chr1 69409671 69409796 -127785636 + CT-rich Low_complexity Low_complexity 4 126 0 5 1114 692 274 135 16 chr1 69409972 69410217 -127785215 - B4A SINE B4 -16 276 3 6 1114 234 325 80 149 chr1 69410258 69410487 -127784945 + MLT-int LTR MaLR 402 612 -1123 6 1114 338 0 0 23 chr1 69410487 69410530 -127784902 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 6 1114 234 325 80 149 chr1 69410530 69410650 -127784782 + MLT-int LTR MaLR 613 727 -1008 6 1114 375 236 22 11 chr1 69410914 69411004 -127784428 - MTD LTR MaLR -47 372 282 6 1114 868 297 20 33 chr1 69411059 69411303 -127784129 - MTD LTR MaLR -149 270 30 6 1114 321 26 0 0 chr1 69411317 69411355 -127784077 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1114 741 379 166 24 chr1 69411432 69411980 -127783452 + MLT-int LTR MaLR 1110 1735 0 6 1114 360 0 0 0 chr1 69412190 69412230 -127783202 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 6 1114 247 65 0 0 chr1 69412245 69412276 -127783156 + Lx7 LINE L1 6832 6862 -834 6 1114 2096 236 51 29 chr1 69412270 69412820 -127782612 + Lx6 LINE L1 6899 7460 0 6 1114 33 0 0 0 chr1 69413114 69413147 -127782285 + AT_rich Low_complexity Low_complexity 1 33 0 6 1114 300 257 115 57 chr1 69413162 69413319 -127782113 + L3 LINE CR1 2428 2593 -1896 6 1114 471 18 0 0 chr1 69414340 69414396 -127781036 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1114 299 345 112 94 chr1 69414971 69415579 -127779853 + L3 LINE CR1 3390 4008 -481 6 1114 1784 289 67 82 chr1 69416322 69417371 -127778061 + RMER1C Other Other 10 1042 -300 6 1114 4309 54 0 0 chr1 69417368 69417927 -127777505 + L1Md_F3 LINE L1 5028 5586 -297 6 1114 7891 46 11 0 chr1 69417927 69418900 -127776532 + L1Md_F3 LINE L1 5587 6570 -14 6 1114 1038 191 59 45 chr1 69418908 69419198 -127776234 + RMER1C Other Other 1040 1333 -9 6 1114 328 288 173 17 chr1 69419553 69419726 -127775706 - HAL1-3A_ME LINE L1 -419 2439 2240 6 1114 2630 137 48 36 chr1 69419816 69420340 -127775092 + Lx LINE L1 6107 6636 -18 6 1114 288 288 151 40 chr1 69420501 69420700 -127774732 - L2a LINE L2 -14 3412 3192 6 1114 1206 68 6 0 chr1 69420704 69420866 -127774566 + L1Md_T LINE L1 6420 6582 0 6 1114 503 0 81 0 chr1 69422341 69422428 -127773004 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 1114 365 276 7 15 chr1 69422588 69422695 -127772737 - PB1D10 SINE Alu -6 114 12 6 1114 268 355 7 7 chr1 69423005 69423141 -127772291 + L1MD2 LINE L1 5887 6022 -337 6 1114 805 316 70 50 chr1 69425797 69426500 -127768932 - L1MC1 LINE L1 -35 6473 5757 6 1114 235 345 0 17 chr1 69426590 69426705 -127768727 - L1MC1 LINE L1 -753 5766 5654 6 1114 610 281 62 24 chr1 69426732 69427020 -127768412 - L1MC1 LINE L1 -1200 5121 4823 6 1114 329 62 21 0 chr1 69427111 69427159 -127768273 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 6 1114 488 283 57 82 chr1 69427163 69427295 -127768137 + B4 SINE B4 87 215 -77 6 1114 207 0 0 0 chr1 69427295 69427318 -127768114 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1114 488 283 57 82 chr1 69427318 69427343 -127768089 + B4 SINE B4 216 240 -52 6 1114 246 263 238 24 chr1 69427450 69427660 -127767772 - L1MC1 LINE L1 -1556 4765 4511 6 1114 300 268 54 61 chr1 69427672 69427819 -127767613 + RSINE1 SINE B4 2 147 -18 6 1114 330 370 58 31 chr1 69427966 69428189 -127767243 - L1MC1 LINE L1 -1857 4464 4236 6 1114 784 277 107 16 chr1 69428274 69428659 -127766773 - L1MC1 LINE L1 -2194 4127 3708 6 1114 269 355 25 0 chr1 69428699 69428753 -127766679 - ID4_ SINE ID -23 129 7 6 1114 290 333 0 0 chr1 69428753 69428819 -127766613 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 6 1114 1855 263 85 12 chr1 69428896 69429998 -127765434 - L1MC1 LINE L1 -2943 3378 2199 6 1114 735 139 0 0 chr1 69430037 69430166 -127765266 + (GA)n Simple_repeat Simple_repeat 1 129 0 6 1114 371 376 7 47 chr1 69430168 69430316 -127765116 - RSINE1 SINE B4 -21 144 3 6 1114 340 320 46 11 chr1 69430320 69430494 -127764938 - L1MC1 LINE L1 -4297 2211 2032 6 1114 544 268 174 48 chr1 69430512 69431132 -127764300 - L1MC1 LINE L1 -4608 1900 1203 6 1114 846 133 0 7 chr1 69431134 69431270 -127764162 + URR1B DNA MER1_type 91 225 0 6 1114 234 105 0 0 chr1 69431341 69431379 -127764053 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1114 1109 88 0 7 chr1 69431613 69431761 -127763671 - B1_Mus2 SINE Alu 0 147 1 6 1114 180 0 0 0 chr1 69431767 69431787 -127763645 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 6 1114 332 65 48 0 chr1 69431791 69431853 -127763579 - L1_Mus2 LINE L1 0 6566 6502 6 1114 1200 91 11 0 chr1 69432630 69432805 -127762627 - L1_Mus1 LINE L1 -400 6167 5991 6 1114 254 299 0 33 chr1 69432992 69433082 -127762350 + (TATG)n Simple_repeat Simple_repeat 4 90 0 6 1114 643 326 72 29 chr1 69433084 69433362 -127762070 - B4A SINE B4 -1 291 2 6 1114 1300 306 62 24 chr1 69433381 69433674 -127761758 - L1MC1 LINE L1 -5560 948 656 6 1114 1305 168 0 22 chr1 69433674 69433905 -127761527 + URR1A DNA MER1_type 1 226 0 6 1114 1300 306 62 24 chr1 69433905 69434324 -127761108 - L1MC1 LINE L1 -5853 655 209 6 1114 1433 69 11 0 chr1 69435810 69435999 -127759433 + B2_Mm1t SINE B2 2 192 -1 6 1114 560 272 88 7 chr1 69436120 69436268 -127759164 + RSINE1 SINE B4 3 162 -3 6 1114 23 54 0 0 chr1 69436268 69436305 -127759127 + AT_rich Low_complexity Low_complexity 1 37 0 6 1114 21 71 0 0 chr1 69436499 69436541 -127758891 + AT_rich Low_complexity Low_complexity 1 42 0 6 1114 855 206 102 15 chr1 69438137 69438334 -127757098 + B3 SINE B2 3 216 0 6 1114 387 345 167 18 chr1 69438762 69439205 -127756227 - L2 LINE L2 -377 3042 2534 6 1114 1321 85 16 26 chr1 69439666 69439860 -127755572 + B2_Mm2 SINE B2 4 195 0 6 1114 244 275 28 42 chr1 69440276 69440348 -127755084 - ID4 SINE ID -7 76 6 6 1114 234 0 0 0 chr1 69441233 69441259 -127754173 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1114 824 184 0 0 chr1 69441265 69441406 -127754026 - B1_Mus1 SINE Alu -7 141 1 6 1114 381 395 101 14 chr1 69442201 69442419 -127753013 + MER21B LTR ERV1 22 258 -605 6 1114 319 169 153 14 chr1 69442618 69442690 -127752742 + RMER30 DNA MER1_type 103 184 -18 6 1114 24 0 0 0 chr1 69442983 69443007 -127752425 + AT_rich Low_complexity Low_complexity 1 24 0 6 1114 803 361 98 66 chr1 69444368 69445843 -127749589 + L2 LINE L2 193 1714 -1705 6 1114 1482 163 203 17 chr1 69446118 69446409 -127749023 + ORR1B2 LTR MaLR 1 345 -22 6 1114 204 394 118 17 chr1 69446564 69446853 -127748579 + L2 LINE L2 2749 3066 -353 6 1114 199 299 60 0 chr1 69447064 69447075 -127748357 + MIRm SINE MIR 206 276 0 6 1114 220 268 18 0 chr1 69447075 69447131 -127748301 + L2c LINE L2 3329 3385 -2 6 1114 551 264 134 86 chr1 69448075 69448344 -127747088 - RMER15 LTR ERVL -19 556 275 6 1114 357 337 80 37 chr1 69448842 69449030 -127746402 + B3A SINE B2 2 197 -1 6 1114 671 128 24 8 chr1 69449190 69449316 -127746116 + Lx LINE L1 6522 6649 -5 6 1114 490 246 32 24 chr1 69449895 69450020 -127745412 + B1F2 SINE Alu 24 149 0 6 1114 594 159 180 16 chr1 69450318 69450446 -127744986 - B1_Mur4 SINE Alu 0 150 2 6 1114 277 265 0 6 chr1 69450477 69450548 -127744884 - ID4 SINE ID -73 79 12 6 1114 512 249 103 60 chr1 69450732 69450916 -127744516 - B3A SINE B2 -6 192 1 6 1114 640 277 123 75 chr1 69451049 69451288 -127744144 - MTEa LTR MaLR -2 377 110 6 1114 207 0 0 0 chr1 69451401 69451424 -127744008 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1114 237 287 30 50 chr1 69453104 69453203 -127742229 + Arthur1B DNA Tip100 70 166 -1059 6 1114 198 309 18 0 chr1 69453238 69453293 -127742139 - MIRb SINE MIR -65 203 148 6 1114 1151 299 85 34 chr1 69454062 69454509 -127740923 - MT2A LTR ERVL -2 531 62 6 1114 195 261 60 30 chr1 69455703 69455770 -127739662 + MIRc SINE MIR 53 121 -147 6 1114 194 149 64 0 chr1 69455979 69456026 -127739406 + CT-rich Low_complexity Low_complexity 4 53 0 6 1114 354 288 96 53 chr1 69457025 69457212 -127738220 + HAL1b LINE L1 1279 1473 -536 6 1114 640 224 7 36 chr1 69457540 69457679 -127737753 + B1_Mus1 SINE Alu 1 135 -13 6 1114 390 21 0 0 chr1 69457685 69457732 -127737700 + (TAA)n Simple_repeat Simple_repeat 3 49 0 6 1114 23 54 0 0 chr1 69457995 69458032 -127737400 + AT_rich Low_complexity Low_complexity 1 37 0 6 1114 441 0 0 0 chr1 69458470 69458519 -127736913 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1114 720 238 124 0 chr1 69458939 69459124 -127736308 + B3 SINE B2 3 210 -6 6 1114 321 288 57 41 chr1 69459777 69459900 -127735532 + RMER15 LTR ERVL 433 557 -18 6 1114 2017 246 160 78 chr1 69460622 69461023 -127734409 + Lx9 LINE L1 6255 6942 -702 6 1114 423 38 0 8 chr1 69461023 69461083 -127734349 + B1_Mm SINE Alu 81 137 -12 6 1114 216 0 0 0 chr1 69461083 69461107 -127734325 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1114 2017 213 153 111 chr1 69461107 69461733 -127733699 + Lx9 LINE L1 6943 7579 -65 6 1114 323 341 90 54 chr1 69461855 69462245 -127733187 + HAL1 LINE L1 1980 2383 -124 6 1114 459 0 0 0 chr1 69462525 69462576 -127732856 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1114 546 282 21 14 chr1 69462587 69462731 -127732701 - B3A SINE B2 -48 150 6 6 1114 22 35 0 0 chr1 69463307 69463336 -127732096 + AT_rich Low_complexity Low_complexity 1 29 0 6 1114 277 321 41 23 chr1 69463532 69463704 -127731728 + L1MA5 LINE L1 5858 6032 -268 6 1114 947 309 30 19 chr1 69464143 69464407 -127731025 + B4 SINE B4 2 268 -24 6 1114 864 235 83 26 chr1 69464738 69464930 -127730502 + B3A SINE B2 1 203 -13 6 1114 404 241 6 0 chr1 69464949 69465123 -127730309 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1114 467 45 15 0 chr1 69465469 69465535 -127729897 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1114 205 101 98 27 chr1 69465858 69465970 -127729462 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 6 1114 363 148 60 0 chr1 69465990 69466139 -127729293 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 6 1114 437 194 214 0 chr1 69467189 69467287 -127728145 - PB1D9 SINE Alu 0 120 2 6 1114 195 319 119 30 chr1 69467578 69467601 -127727831 - MIRc SINE MIR -83 185 159 6 1114 540 56 0 0 chr1 69467601 69467673 -127727759 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1114 195 319 119 30 chr1 69467673 69467817 -127727615 - MIRc SINE MIR -110 158 4 6 139 1565 208 42 11 chr1 69467961 69468320 -127727112 - ORR1D2 LTR MaLR 0 370 1 6 1115 231 167 0 0 chr1 69468476 69468518 -127726914 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1115 305 260 40 40 chr1 69468553 69468653 -127726779 + PB1D7 SINE Alu 5 104 -16 6 1115 338 229 27 45 chr1 69468653 69468885 -127726547 + GA-rich Low_complexity Low_complexity 1 227 0 6 1115 225 368 0 13 chr1 69469339 69469416 -127726016 - ID4_ SINE ID -3 80 5 6 1115 245 308 40 59 chr1 69469426 69469578 -127725854 - B1F SINE Alu 0 149 1 6 1115 2095 100 18 62 chr1 69470033 69470374 -127725058 - ORR1A3 LTR MaLR 0 326 1 6 1115 635 333 74 34 chr1 69470472 69471112 -127724320 - ERVL-int LTR ERVL -2848 2866 2217 6 1115 478 349 52 8 chr1 69471205 69471456 -127723976 - ERVL-int LTR ERVL -3691 1976 1715 6 1115 699 221 101 64 chr1 69472278 69472466 -127722966 + B3A SINE B2 1 195 0 7 1115 306 106 0 0 chr1 69472466 69472513 -127722919 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1115 310 110 27 14 chr1 69473443 69473517 -127721915 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 7 1115 3268 38 0 2 chr1 69473618 69474013 -127721419 + L1Md_F3 LINE L1 6189 6582 -2 7 1115 218 377 0 0 chr1 69474176 69474253 -127721179 - L2b LINE L2 -8 3367 3291 7 1115 368 71 18 0 chr1 69474799 69474855 -127720577 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1115 412 207 115 0 chr1 69474887 69474974 -127720458 - B4A SINE B4 -18 274 178 7 1115 382 301 86 26 chr1 69474964 69475080 -127720352 - B4A SINE B4 -51 241 119 7 1115 313 298 117 68 chr1 69477080 69477242 -127718190 - HAL1-3A_ME LINE L1 -419 2439 2270 7 1115 195 308 62 0 chr1 69477659 69477724 -127717708 - MER5B DNA MER1_type -106 72 4 7 1115 666 224 94 29 chr1 69478011 69478181 -127717251 + B3A SINE B2 1 181 -17 7 1115 458 320 8 30 chr1 69478241 69478373 -127717059 + B1F1 SINE Alu 20 148 -1 7 1115 495 0 0 0 chr1 69478387 69478442 -127716990 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1115 342 330 77 10 chr1 69478452 69478556 -127716876 + B4A SINE B4 1 111 -181 7 1115 531 202 0 0 chr1 69478776 69478900 -127716532 + (CA)n Simple_repeat Simple_repeat 2 125 0 7 1115 296 313 12 125 chr1 69479407 69479575 -127715857 - L2 LINE L2 -1334 2085 1937 7 1115 204 67 0 0 chr1 69481641 69481671 -127713761 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1115 1137 82 0 0 chr1 69481671 69481818 -127713614 - B1_Mus2 SINE Alu 0 147 1 7 1115 22 35 0 0 chr1 69481820 69481849 -127713583 + AT_rich Low_complexity Low_complexity 1 29 0 7 1115 266 0 29 0 chr1 69482001 69482035 -127713397 + (TTA)n Simple_repeat Simple_repeat 1 35 0 7 1115 788 326 75 0 chr1 69482071 69482298 -127713134 - B4 SINE B4 -4 288 45 7 1115 284 270 65 64 chr1 69482317 69482444 -127712988 - MIRc SINE MIR -108 168 36 7 1115 318 315 243 14 chr1 69483002 69483204 -127712228 - MER121 Unknown Unknown -59 353 106 7 1115 190 81 26 26 chr1 69484196 69484234 -127711198 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 7 1115 186 133 0 0 chr1 69484244 69484274 -127711158 + (CCCTG)n Simple_repeat Simple_repeat 2 31 0 7 1115 1022 274 11 39 chr1 69484308 69484593 -127710839 - B4A SINE B4 -14 278 2 7 1115 857 276 110 7 chr1 69484817 69485098 -127710334 - MER82 DNA MER2_type -282 371 62 7 1115 691 312 42 19 chr1 69486399 69486611 -127708821 - B4A SINE B4 -74 218 2 7 1115 26 30 0 0 chr1 69486897 69486930 -127708502 + AT_rich Low_complexity Low_complexity 1 33 0 7 1115 210 359 11 11 chr1 69487323 69487416 -127708016 + MIRc SINE MIR 63 155 -113 7 1115 21 0 0 0 chr1 69487448 69487469 -127707963 + AT_rich Low_complexity Low_complexity 1 21 0 7 1115 288 0 0 0 chr1 69487985 69488017 -127707415 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1115 622 301 134 23 chr1 69488664 69488926 -127706506 + B4A SINE B4 2 292 0 7 1115 368 221 9 0 chr1 69488929 69489042 -127706390 + (CA)n Simple_repeat Simple_repeat 1 114 0 7 1115 342 229 0 0 chr1 69489299 69489395 -127706037 + (TG)n Simple_repeat Simple_repeat 1 96 0 7 1115 873 148 224 17 chr1 69489552 69489731 -127705701 - B3 SINE B2 0 216 1 7 1115 500 247 207 6 chr1 69489738 69489917 -127705515 - B3 SINE B2 0 216 2 7 1115 419 282 0 41 chr1 69489994 69490116 -127705316 - RSINE1 SINE B4 -44 121 5 7 1115 1913 101 23 26 chr1 69490646 69491009 -127704423 - L1_Mus4 LINE L1 0 6636 6329 7 1115 207 0 0 0 chr1 69491419 69491442 -127703990 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1115 225 312 56 35 chr1 69491930 69492073 -127703359 - RSINE1 SINE B4 -8 157 12 7 1115 520 229 122 25 chr1 69492075 69492272 -127703160 - B3 SINE B2 0 216 1 7 1115 755 188 22 0 chr1 69492735 69492873 -127702559 + B1_Mur4 SINE Alu 1 141 -9 7 1115 32 57 0 0 chr1 69493060 69493113 -127702319 + AT_rich Low_complexity Low_complexity 1 53 0 7 1115 707 318 113 47 chr1 69493127 69493401 -127702031 + B4A SINE B4 1 292 0 7 1115 239 351 0 0 chr1 69493463 69493540 -127701892 + ID4_ SINE ID 3 79 -4 7 1115 236 246 257 15 chr1 69493845 69493981 -127701451 + MIR SINE MIR 61 229 -33 7 1115 374 222 0 0 chr1 69494823 69494895 -127700537 + B1_Mur1 SINE Alu 65 136 -13 7 1115 785 172 0 56 chr1 69494916 69495058 -127700374 + B1_Mus2 SINE Alu 2 135 -12 7 1115 234 62 0 0 chr1 69495070 69495102 -127700330 + (GGA)n Simple_repeat Simple_repeat 2 33 0 7 1115 896 167 7 0 chr1 69495108 69495252 -127700180 + B1_Mur4 SINE Alu 6 150 0 7 1115 1093 158 0 0 chr1 69495259 69495443 -127699989 - Lx4B LINE L1 -549 6509 6326 7 1115 2503 138 20 44 chr1 69495443 69495897 -127699535 + Lx4B LINE L1 6616 7058 0 7 1115 195 100 0 0 chr1 69496061 69496091 -127699341 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1115 432 284 17 33 chr1 69496193 69496313 -127699119 - B4A SINE B4 -130 162 45 7 1115 191 103 26 0 chr1 69496400 69496439 -127698993 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1115 225 0 0 0 chr1 69496469 69496494 -127698938 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1115 261 83 0 0 chr1 69497106 69497142 -127698290 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 7 1115 335 281 33 11 chr1 69497596 69497686 -127697746 + PB1D10 SINE Alu 25 116 -1 7 1115 941 209 72 29 chr1 69497699 69497906 -127697526 + B3 SINE B2 1 216 0 7 1115 635 132 9 0 chr1 69497960 69498074 -127697358 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 7 1115 267 254 56 14 chr1 69498085 69498157 -127697275 + ID4_ SINE ID 9 83 0 7 1115 1142 58 0 0 chr1 69498683 69498821 -127696611 + B1_Mus1 SINE Alu 1 138 -10 7 1115 353 22 22 0 chr1 69498821 69498867 -127696565 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1115 180 0 0 0 chr1 69498868 69498888 -127696544 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1115 219 348 157 0 chr1 69499201 69499316 -127696116 + MIRb SINE MIR 3 135 -141 7 1115 1202 274 26 23 chr1 69500411 69500714 -127694718 - MTEa LTR MaLR 0 379 76 1 1115 242 250 50 71 chr1 69500762 69500861 -127694571 - MT2B2 LTR ERVL -307 277 181 2 1115 408 219 41 0 chr1 69500789 69500862 -127694570 - B1F1 SINE Alu -58 91 16 3 1115 26 50 0 0 chr1 69500908 69500948 -127694484 + AT_rich Low_complexity Low_complexity 1 40 0 4 1115 1554 260 31 8 chr1 69500966 69501358 -127694074 - Lx6 LINE L1 -26 7434 7034 5 1115 183 129 0 0 chr1 69502331 69502362 -127693070 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1115 707 159 0 14 chr1 69502365 69502512 -127692920 + (CATA)n Simple_repeat Simple_repeat 1 145 0 7 1115 301 247 12 12 chr1 69502512 69502594 -127692838 + HAL1-3A_ME LINE L1 1973 2054 -804 8 1115 1391 45 0 6 chr1 69503315 69503495 -127691937 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 9 1115 338 165 13 0 chr1 69503508 69503587 -127691845 + (TTGGGG)n Simple_repeat Simple_repeat 5 84 0 1 1115 207 0 0 0 chr1 69504933 69504956 -127690476 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1115 23 0 0 0 chr1 69506061 69506084 -127689348 + AT_rich Low_complexity Low_complexity 1 23 0 1 1115 855 202 17 0 chr1 69506123 69506425 -127689007 + CT-rich Low_complexity Low_complexity 1 307 0 1 1115 632 219 132 12 chr1 69506508 69506674 -127688758 - MTE2a LTR MaLR 0 379 194 1 1115 580 277 20 7 chr1 69506724 69506873 -127688559 + RSINE1 SINE B4 11 161 -4 1 1115 588 283 64 21 chr1 69506894 69507082 -127688350 + B3 SINE B2 21 216 0 1 1115 331 283 0 10 chr1 69507097 69507197 -127688235 - MTE2a LTR MaLR -280 99 1 1 1115 377 340 25 88 chr1 69509734 69510018 -127685414 + Charlie4a DNA MER1_type 26 291 -217 1 1115 493 314 52 66 chr1 69510037 69510442 -127684990 - RLTR12B LTR ERVK -263 305 1 1 1115 21 0 0 0 chr1 69510893 69510914 -127684518 + AT_rich Low_complexity Low_complexity 1 21 0 1 1115 557 289 79 134 chr1 69510985 69511477 -127683955 + RLTR12B LTR ERVK 33 497 -31 2 1115 616 352 84 18 chr1 69511604 69511879 -127683553 - MLT2B4 LTR ERVL -242 314 22 2 1115 1001 105 7 0 chr1 69514279 69514432 -127681000 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 2 1115 216 0 0 0 chr1 69514606 69514630 -127680802 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 2 1115 508 332 76 17 chr1 69515194 69515482 -127679950 + MLT1D LTR MaLR 21 325 -180 2 1115 28 0 0 0 chr1 69516980 69517008 -127678424 + AT_rich Low_complexity Low_complexity 1 28 0 2 1115 423 0 0 0 chr1 69517287 69517334 -127678098 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1115 594 140 0 0 chr1 69518879 69518979 -127676453 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1115 202 200 40 0 chr1 69519301 69519351 -127676081 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1115 891 214 91 10 chr1 69519382 69519580 -127675852 + B3 SINE B2 2 215 -1 2 1115 950 319 9 22 chr1 69523112 69523436 -127671996 + Lx8 LINE L1 6946 7265 -208 3 1115 23 0 0 0 chr1 69523456 69523479 -127671953 + AT_rich Low_complexity Low_complexity 1 23 0 3 1115 218 32 32 0 chr1 69523646 69523677 -127671755 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 3 1115 209 33 33 0 chr1 69526591 69526621 -127668811 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 3 1115 7762 42 12 1 chr1 69526813 69528200 -127667232 - L1Md_F2 LINE L1 -10 6572 5163 3 1115 185 310 0 17 chr1 69529324 69529383 -127666049 + L2 LINE L2 2791 2848 -571 3 1115 314 383 2 5 chr1 69530596 69530752 -127664680 - MIR SINE MIR -113 155 2 3 1115 379 364 155 62 chr1 69530986 69531387 -127664045 - LTR16B1 LTR ERVL -12 468 31 3 1115 351 0 0 0 chr1 69531513 69531552 -127663880 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1115 2148 318 37 62 chr1 69531573 69532683 -127662749 + Lx8 LINE L1 6205 7286 -187 3 1115 378 0 0 0 chr1 69532692 69532734 -127662698 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1115 800 291 94 47 chr1 69533087 69533889 -127661543 + L1MB1 LINE L1 5278 6140 -28 4 1115 748 240 22 5 chr1 69535341 69535525 -127659907 - B3A SINE B2 -11 187 1 4 1115 486 0 0 0 chr1 69536444 69536498 -127658934 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1115 427 304 18 42 chr1 69536505 69536673 -127658759 - RMER15 LTR ERVL -56 519 356 4 1115 380 272 94 100 chr1 69536918 69537055 -127658377 - B3 SINE B2 0 193 53 4 1115 3657 144 93 15 chr1 69537055 69537356 -127658076 + RMER6D LTR ERVK 2 323 -397 4 1115 342 0 0 0 chr1 69537356 69537394 -127658038 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1115 3657 144 93 15 chr1 69537394 69537755 -127657677 + RMER6D LTR ERVK 324 716 -4 4 1115 380 289 0 88 chr1 69537755 69537797 -127657635 - B3 SINE B2 -162 54 15 4 1115 315 325 206 6 chr1 69538495 69538665 -127656767 + LFSINE_Vert SINE SINE 250 453 -6 4 1115 556 205 7 7 chr1 69540734 69540886 -127654546 + (TATG)n Simple_repeat Simple_repeat 3 154 0 4 1115 710 160 22 17 chr1 69540903 69541081 -127654351 + (TATG)n Simple_repeat Simple_repeat 2 180 0 4 1115 910 304 19 19 chr1 69541097 69541365 -127654067 - B4A SINE B4 -1 291 24 5 1115 21 0 0 0 chr1 69541488 69541509 -127653923 + AT_rich Low_complexity Low_complexity 1 21 0 5 1115 221 54 0 75 chr1 69541701 69541741 -127653691 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 5 1115 1088 276 17 17 chr1 69542091 69542379 -127653053 + B4 SINE B4 3 290 -2 5 1115 245 182 18 0 chr1 69543717 69543772 -127651660 + (CATA)n Simple_repeat Simple_repeat 3 58 0 5 1115 1020 156 0 0 chr1 69543776 69543956 -127651476 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1115 480 99 0 0 chr1 69543956 69544027 -127651405 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1115 1041 43 7 7 chr1 69544662 69544801 -127650631 - B1_Mus1 SINE Alu -2 146 8 5 1115 607 245 6 25 chr1 69544801 69544825 -127650607 - ID_B1 SINE B4 -1 223 64 5 1115 23 0 0 0 chr1 69548669 69548692 -127646740 + AT_rich Low_complexity Low_complexity 1 23 0 5 1115 442 160 11 11 chr1 69552086 69552181 -127643251 - L1MA6 LINE L1 -1 6299 6205 6 1115 809 244 39 44 chr1 69553736 69553942 -127641490 + B3 SINE B2 1 205 -11 6 1115 235 250 0 0 chr1 69555128 69555184 -127640248 + T-rich Low_complexity Low_complexity 1 56 0 6 1115 317 292 62 93 chr1 69555571 69556055 -127639377 - L1ME1 LINE L1 -58 6121 5653 6 1115 369 0 0 0 chr1 69556075 69556116 -127639316 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1115 396 40 0 0 chr1 69556120 69556170 -127639262 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1115 251 298 138 28 chr1 69556834 69557117 -127638315 - L1ME1 LINE L1 -1134 5012 4699 6 1115 1576 153 117 50 chr1 69557332 69557690 -127637742 - ORR1B1 LTR MaLR -8 386 5 6 1115 213 255 0 0 chr1 69558137 69558188 -127637244 - ID4_ SINE ID -31 52 2 6 1115 288 0 0 0 chr1 69558205 69558237 -127637195 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1115 212 293 17 0 chr1 69558689 69558747 -127636685 + BC1_Mm scRNA scRNA 13 71 -81 6 1115 558 63 0 0 chr1 69558751 69558830 -127636602 + (TC)n Simple_repeat Simple_repeat 1 79 0 7 1115 414 0 0 0 chr1 69561510 69561556 -127633876 + (TATG)n Simple_repeat Simple_repeat 2 47 0 7 1115 313 0 20 60 chr1 69561749 69561799 -127633633 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 7 1115 517 107 286 0 chr1 69561803 69561915 -127633517 - RMER1C Other Other -146 1196 1053 7 1115 23 0 0 0 chr1 69562149 69562172 -127633260 + AT_rich Low_complexity Low_complexity 1 23 0 7 1115 421 331 66 6 chr1 69562519 69562701 -127632731 - MIR SINE MIR -69 193 1 7 1115 180 0 0 0 chr1 69562730 69562750 -127632682 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1115 278 348 107 41 chr1 69562896 69563334 -127632098 + L2 LINE L2 2043 2509 -910 7 1115 236 355 21 0 chr1 69563441 69563534 -127631898 + MIRb SINE MIR 93 187 -81 7 1115 521 248 21 21 chr1 69563595 69563735 -127631697 + B1_Mur4 SINE Alu 5 144 -6 7 1115 955 242 92 26 chr1 69564820 69565091 -127630341 - B4 SINE B4 0 292 4 8 1115 789 319 148 53 chr1 69565683 69566291 -127629141 - Tigger13a DNA MER2_type -101 670 5 8 1115 23 33 0 0 chr1 69566620 69566650 -127628782 + AT_rich Low_complexity Low_complexity 1 30 0 8 1115 453 284 49 55 chr1 69567349 69567513 -127627919 + RSINE1 SINE B4 3 165 0 8 1115 23 0 0 0 chr1 69567553 69567576 -127627856 + AT_rich Low_complexity Low_complexity 1 23 0 8 1115 511 298 97 44 chr1 69568272 69568570 -127626862 - RMER13A LTR ERVK -526 334 21 8 1115 203 194 0 0 chr1 69568728 69568764 -127626668 + T-rich Low_complexity Low_complexity 1 36 0 8 1115 316 285 83 50 chr1 69569246 69569464 -127625968 + Charlie5 DNA MER1_type 2360 2584 -40 8 1115 183 114 0 0 chr1 69570796 69570831 -127624601 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 8 1115 284 344 124 47 chr1 69570832 69571299 -127624133 + L2 LINE L2 2364 2866 -553 8 1115 2889 31 22 38 chr1 69571486 69571857 -127623575 + RLTR10B2 LTR ERVK 1 365 0 9 1115 678 75 0 0 chr1 69574190 69574283 -127621149 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 9 1115 796 235 0 7 chr1 69574672 69574822 -127620610 - B1_Mur4 SINE Alu -1 149 1 9 1115 24 0 0 0 chr1 69576187 69576211 -127619221 + AT_rich Low_complexity Low_complexity 1 24 0 9 1115 438 36 0 0 chr1 69577634 69577690 -127617742 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1115 592 156 8 8 chr1 69578016 69578145 -127617287 + (CA)n Simple_repeat Simple_repeat 2 130 0 9 1115 215 31 31 0 chr1 69578328 69578360 -127617072 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1115 32 75 0 0 chr1 69578401 69578468 -127616964 + AT_rich Low_complexity Low_complexity 1 67 0 9 1115 183 42 0 0 chr1 69581120 69581144 -127614288 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1115 210 71 0 0 chr1 69583778 69583806 -127611626 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1115 318 148 0 0 chr1 69586074 69586128 -127609304 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1115 2837 130 5 2 chr1 69587278 69587718 -127607714 + Lx3A LINE L1 6538 6978 -3 1 1115 721 103 17 0 chr1 69587748 69587865 -127607567 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 1 1115 210 71 0 0 chr1 69588696 69588724 -127606708 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1115 542 179 0 7 chr1 69589127 69589262 -127606170 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 1115 473 286 0 0 chr1 69590646 69590761 -127604671 + B1F SINE Alu 2 116 -4 1 1115 200 386 75 8 chr1 69591183 69591303 -127604129 - MIR SINE MIR -38 224 97 1 1115 23 33 0 0 chr1 69591375 69591405 -127604027 + AT_rich Low_complexity Low_complexity 1 30 0 1 1115 23 0 0 0 chr1 69593206 69593229 -127602203 + AT_rich Low_complexity Low_complexity 1 23 0 1 1115 749 228 166 0 chr1 69593499 69593692 -127601740 + URR1B DNA MER1_type 1 225 0 1 1115 1000 251 102 60 chr1 69597203 69597567 -127597865 - MTE2b LTR MaLR 0 379 1 1 1115 580 189 17 59 chr1 69598148 69598266 -127597166 - B3A SINE B2 -82 116 4 1 1115 26 50 0 0 chr1 69598269 69598309 -127597123 + AT_rich Low_complexity Low_complexity 1 40 0 1 1116 291 54 0 0 chr1 69599379 69599416 -127596016 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1116 314 240 83 0 chr1 69599717 69599813 -127595619 + L1MA8 LINE L1 6054 6157 -134 1 1116 229 287 53 0 chr1 69600392 69600542 -127594890 - L1MEc LINE L1 -2926 3393 3236 1 1116 301 315 49 7 chr1 69600549 69600693 -127594739 - L1MEc LINE L1 -5592 808 659 1 1116 248 309 65 25 chr1 69600934 69601133 -127594299 - L1MEc LINE L1 -6157 243 37 1 1116 218 250 0 0 chr1 69602163 69602207 -127593225 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 1 1116 274 333 27 0 chr1 69602290 69602365 -127593067 - B4A SINE B4 -215 77 1 1 1116 441 327 77 14 chr1 69602585 69602870 -127592562 + MER119 DNA MER1_type 107 409 -174 1 1116 369 0 0 0 chr1 69603641 69603682 -127591750 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1116 232 312 25 12 chr1 69604094 69604175 -127591257 + ID4 SINE ID 2 83 0 1 1116 406 331 31 50 chr1 69604992 69605151 -127590281 - B4 SINE B4 -7 285 130 1 1116 600 292 39 54 chr1 69606771 69606974 -127588458 + B4A SINE B4 2 201 -91 1 1116 453 19 0 0 chr1 69606987 69607041 -127588391 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1116 297 0 0 0 chr1 69607512 69607545 -127587887 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1116 971 245 10 0 chr1 69608347 69608555 -127586877 - B3 SINE B2 -6 210 1 1 1116 219 69 0 0 chr1 69608678 69608707 -127586725 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1116 22 56 0 0 chr1 69608742 69608778 -127586654 + AT_rich Low_complexity Low_complexity 1 36 0 1 1116 228 200 0 0 chr1 69609126 69609176 -127586256 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 1116 607 225 193 12 chr1 69609429 69609600 -127585832 - B3 SINE B2 -13 203 2 1 1116 226 299 0 23 chr1 69610043 69610130 -127585302 + MIR SINE MIR 20 154 -108 1 1116 393 281 152 32 chr1 69610231 69610481 -127584951 + B4 SINE B4 1 280 -12 1 1116 343 288 143 7 chr1 69610781 69610928 -127584504 + Tigger13a DNA MER2_type 452 618 -153 1 1116 387 0 0 0 chr1 69610941 69610984 -127584448 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1116 3887 82 27 16 chr1 69611346 69611900 -127583532 - Lx3_Mus LINE L1 -10 6999 6440 1 1116 238 344 105 68 chr1 69612159 69612321 -127583111 + LTR33 LTR ERVL 19 186 -329 1 1116 440 99 0 14 chr1 69613557 69613629 -127581803 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 1116 909 55 158 0 chr1 69613630 69613757 -127581675 - B1_Mm SINE Alu 0 147 1 1 1116 277 321 83 15 chr1 69614250 69614383 -127581049 + ERVL-B4-int LTR ERVL 3507 3648 -2066 1 1116 4354 29 0 12 chr1 69615693 69616211 -127579221 + L1Md_F2 LINE L1 6071 6582 0 1 1116 637 204 0 0 chr1 69618681 69618794 -127576638 + PB1D9 SINE Alu 1 113 -7 1 1116 232 327 114 9 chr1 69618817 69618922 -127576510 - PB1D10 SINE Alu -1 116 1 1 1116 324 0 0 0 chr1 69619938 69619974 -127575458 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1116 24 32 0 0 chr1 69620170 69620201 -127575231 + AT_rich Low_complexity Low_complexity 1 31 0 1 1116 401 250 69 10 chr1 69620522 69620623 -127574809 - ID_B1 SINE B4 -30 194 88 1 1116 1726 156 162 3 chr1 69621448 69621788 -127573644 + ORR1B1 LTR MaLR 1 394 0 1 1116 21 0 0 0 chr1 69623155 69623176 -127572256 + AT_rich Low_complexity Low_complexity 1 21 0 1 1116 814 204 7 0 chr1 69623228 69623375 -127572057 - B1_Mur1 SINE Alu -1 148 1 1 1116 446 239 74 68 chr1 69623382 69623398 -127572034 - B1F2 SINE Alu 0 149 5 1 1116 526 208 55 23 chr1 69623398 69623526 -127571906 - ID_B1 SINE B4 -7 217 86 1 1116 242 246 49 0 chr1 69625932 69625993 -127569439 + MIRb SINE MIR 133 196 -72 1 1116 1169 58 0 0 chr1 69627341 69627497 -127567935 - Lx3_Mus LINE L1 -981 6028 5873 1 1116 6412 88 22 14 chr1 69627498 69628436 -127566996 + Lx3_Mus LINE L1 6062 7007 -2 1 1116 40 67 0 0 chr1 69629804 69629879 -127565553 + AT_rich Low_complexity Low_complexity 1 75 0 1 1116 237 33 0 0 chr1 69630475 69630505 -127564927 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1 1116 441 0 0 0 chr1 69630791 69630840 -127564592 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1116 208 241 17 0 chr1 69630853 69630911 -127564521 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1116 625 289 50 77 chr1 69630929 69631229 -127564203 - B4A SINE B4 0 292 1 1 1116 306 125 0 0 chr1 69631679 69631727 -127563705 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1116 1047 65 65 0 chr1 69631727 69631865 -127563567 - B1_Mm SINE Alu 0 147 1 1 1116 1232 269 64 34 chr1 69633357 69633790 -127561642 + L1MA6 LINE L1 3994 4434 -1709 1 1116 3284 24 39 0 chr1 69633790 69634171 -127561261 + MTA_Mm LTR MaLR 1 396 0 1 1116 1232 269 64 34 chr1 69634171 69634348 -127561084 + L1MA6 LINE L1 4435 4622 -1521 1 1116 22 0 0 0 chr1 69634361 69634383 -127561049 + AT_rich Low_complexity Low_complexity 1 22 0 1 1116 690 122 0 0 chr1 69634666 69634773 -127560659 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1116 349 23 68 0 chr1 69634773 69634817 -127560615 + HAL1-3A_ME LINE L1 1979 2025 -833 1 1116 316 325 46 69 chr1 69634800 69634975 -127560457 + L1M2 LINE L1 4307 4477 -1666 1 1116 369 252 21 93 chr1 69634981 69635121 -127560311 + RSINE1 SINE B4 3 132 -33 1 1116 222 128 0 0 chr1 69635127 69635166 -127560266 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1116 370 293 150 10 chr1 69635205 69635412 -127560020 + L1M2 LINE L1 4620 4855 -1288 1 1116 286 306 50 41 chr1 69635470 69635712 -127559720 + L1M2 LINE L1 5002 5245 -898 1 1116 367 308 289 18 chr1 69635720 69635948 -127559484 + B4A SINE B4 1 290 -2 1 1116 1702 284 57 22 chr1 69635949 69636849 -127558583 + L1MA6 LINE L1 5332 6267 -33 1 1116 590 119 20 0 chr1 69636905 69637006 -127558426 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1 1116 2407 111 33 3 chr1 69639270 69639633 -127555799 - Lx3A LINE L1 0 6981 6608 1 1116 213 143 0 23 chr1 69639746 69639789 -127555643 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1116 445 227 212 17 chr1 69640023 69640202 -127555230 - B3 SINE B2 0 216 3 1 1116 500 276 0 141 chr1 69640441 69640597 -127554835 + ID_B1 SINE B4 81 214 -10 1 1116 324 0 0 0 chr1 69640597 69640633 -127554799 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1116 1103 185 18 31 chr1 69640712 69640941 -127554491 - URR1A DNA MER1_type 0 226 1 1 1116 291 71 0 0 chr1 69641050 69641092 -127554340 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1116 222 118 0 0 chr1 69642248 69642282 -127553150 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1116 402 305 0 0 chr1 69644859 69644990 -127550442 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1116 397 333 51 15 chr1 69645265 69645402 -127550030 - B1F1 SINE Alu -1 148 7 1 1116 279 211 276 77 chr1 69646342 69646563 -127548869 - B4A SINE B4 -20 272 8 1 1116 186 43 0 0 chr1 69646824 69646847 -127548585 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1116 2336 22 0 0 chr1 69647238 69647509 -127547923 + L1Md_A LINE L1 6312 6582 0 1 1116 195 42 0 0 chr1 69647516 69647540 -127547892 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1116 261 0 0 0 chr1 69647934 69647963 -127547469 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1116 4139 62 0 36 chr1 69648028 69648583 -127546849 - L1Md_F2 LINE L1 -8 6574 6040 1 1116 348 62 0 0 chr1 69648583 69648631 -127546801 + L1Md_F2 LINE L1 6001 6048 -534 1 1116 209 389 81 14 chr1 69649600 69649811 -127545621 - MIRc SINE MIR -21 247 23 1 1116 920 233 68 14 chr1 69650329 69650551 -127544881 - MER44B DNA MER2_type -212 338 105 1 1116 329 0 24 0 chr1 69651903 69651944 -127543488 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1116 1021 86 0 7 chr1 69651944 69652084 -127543348 - B1_Mus2 SINE Alu -8 139 1 1 1116 225 154 0 0 chr1 69652363 69652402 -127543030 + GA-rich Low_complexity Low_complexity 2 40 0 1 1116 5492 72 16 3 chr1 69652800 69653540 -127541892 - L1Md_F2 LINE L1 0 6582 5833 1 1116 183 80 0 0 chr1 69654809 69654834 -127540598 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 1 1116 496 316 46 0 chr1 69655758 69655910 -127539522 + B3A SINE B2 16 174 -24 1 1116 432 0 0 0 chr1 69655927 69655975 -127539457 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1116 246 382 114 44 chr1 69656186 69656501 -127538931 + L2b LINE L2 3039 3375 0 1 1116 286 265 36 12 chr1 69658689 69658773 -127536659 - MIRb SINE MIR -15 253 168 1 1116 2446 269 90 17 chr1 69659141 69659427 -127536005 - RCHARR1 DNA MER1_type -12 962 671 1 1116 1139 211 168 9 chr1 69659427 69659748 -127535684 + ORR1D1 LTR MaLR 3 374 0 1 1116 2446 269 90 17 chr1 69659748 69660281 -127535151 - RCHARR1 DNA MER1_type -304 670 83 1 1116 312 346 107 41 chr1 69660288 69660457 -127534975 - B3A SINE B2 -17 181 2 1 1116 435 302 122 12 chr1 69660518 69660682 -127534750 + B3A SINE B2 1 182 -16 1 1116 1138 114 6 12 chr1 69661366 69661535 -127533897 + B2_Mm2 SINE B2 1 168 -27 1 1116 240 35 0 0 chr1 69661539 69661568 -127533864 + (GAA)n Simple_repeat Simple_repeat 3 31 0 2 1116 507 168 0 0 chr1 69661915 69662010 -127533422 + CT-rich Low_complexity Low_complexity 3 97 0 2 1116 462 341 60 23 chr1 69662191 69662407 -127533025 + MLT1C LTR MaLR 94 317 -150 2 1116 555 283 86 51 chr1 69664121 69664179 -127531253 - B3 SINE B2 -6 210 151 2 1116 219 114 0 0 chr1 69664179 69664214 -127531218 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1116 555 283 86 51 chr1 69664214 69664352 -127531080 - B3 SINE B2 -66 150 7 2 1116 973 198 13 73 chr1 69664745 69664979 -127530453 - URR1B DNA MER1_type -1 224 5 2 1116 617 330 58 8 chr1 69665493 69665734 -127529698 + ORR1E LTR MaLR 1 253 -106 2 1116 40 0 0 0 chr1 69665803 69665843 -127529589 + AT_rich Low_complexity Low_complexity 1 40 0 2 1116 319 172 0 17 chr1 69665973 69666032 -127529400 - HAL1-3A_ME LINE L1 -840 2018 1961 2 1116 203 313 15 0 chr1 69666480 69666547 -127528885 + GA-rich Low_complexity Low_complexity 1 68 0 2 1116 377 86 17 0 chr1 69666547 69666605 -127528827 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1116 975 279 62 73 chr1 69666994 69667690 -127527742 + L1_Mur3 LINE L1 1527 2194 -3686 2 1116 441 0 0 0 chr1 69667690 69667739 -127527693 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1116 975 279 62 73 chr1 69667739 69667827 -127527605 + L1_Mur3 LINE L1 2195 2303 -3577 2 1116 10455 106 38 14 chr1 69667824 69670279 -127525153 + L1Md_F2 LINE L1 241 2741 -3142 2 1116 11027 80 11 2 chr1 69670278 69670733 -127524699 + L1Md_F2 LINE L1 3992 4446 -1437 2 1116 2537 68 0 9 chr1 69670733 69671075 -127524357 + L1Md_F3 LINE L1 6244 6582 -2 2 1116 11027 80 11 2 chr1 69671075 69672199 -127523233 + L1Md_F2 LINE L1 4447 5583 -300 2 1116 7611 73 1 2 chr1 69672200 69673225 -127522207 + L1Md_F2 LINE L1 5587 6582 0 2 1116 806 296 146 16 chr1 69673925 69674247 -127521185 + Tigger7 DNA MER2_type 45 408 -2083 2 1116 384 222 145 7 chr1 69674248 69674393 -127521039 + Tigger7 DNA MER2_type 2239 2403 -88 2 1116 274 274 103 9 chr1 69674769 69674876 -127520556 - B3A SINE B2 -81 117 1 2 1116 24 0 0 0 chr1 69675151 69675175 -127520257 + AT_rich Low_complexity Low_complexity 1 24 0 2 1116 574 241 51 0 chr1 69675627 69675764 -127519668 - URR1A DNA MER1_type 0 226 83 2 1116 338 349 111 35 chr1 69677582 69677843 -127517589 + L1M5 LINE L1 5508 5788 -336 2 1116 252 0 0 0 chr1 69678077 69678105 -127517327 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1116 239 292 112 0 chr1 69678708 69678797 -127516635 - MER5C DNA MER1_type -1 312 214 2 1116 296 326 75 60 chr1 69678962 69679161 -127516271 + B3 SINE B2 2 203 -13 2 1116 31 68 0 0 chr1 69679544 69679603 -127515829 + AT_rich Low_complexity Low_complexity 1 59 0 2 1116 229 270 0 31 chr1 69679727 69679792 -127515640 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 2 1116 276 77 0 0 chr1 69681276 69681315 -127514117 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1116 4326 85 20 20 chr1 69681587 69682199 -127513233 - L1Md_F2 LINE L1 -10 6572 5961 2 1116 6740 70 2 0 chr1 69682199 69683180 -127512252 + L1Md_F2 LINE L1 4971 5954 -628 2 1116 809 268 36 10 chr1 69683780 69683976 -127511456 - ID_B1 SINE B4 -8 216 16 2 1116 1631 197 82 26 chr1 69685513 69685904 -127509528 + MTD LTR MaLR 4 416 -3 2 1116 275 172 133 82 chr1 69686223 69686381 -127509051 - RLTR21 LTR ERVK -320 1252 1087 2 1116 225 0 0 0 chr1 69688125 69688150 -127507282 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1116 185 128 0 21 chr1 69689025 69689073 -127506359 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1116 909 32 187 0 chr1 69689278 69689401 -127506031 - B1_Mus2 SINE Alu 0 147 2 2 1116 332 323 31 0 chr1 69690155 69690251 -127505181 - PB1D7 SINE Alu 0 120 22 2 1116 324 333 56 77 chr1 69690163 69690358 -127505074 - ID_B1 SINE B4 -31 193 3 2 1116 355 384 101 17 chr1 69691613 69691960 -127503472 - L1M4 LINE L1 -1975 4171 3796 2 1116 279 343 86 0 chr1 69692671 69692776 -127502656 - PB1D10 SINE Alu -1 116 3 2 1116 216 97 0 0 chr1 69692919 69692950 -127502482 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1116 30 45 0 0 chr1 69693217 69693261 -127502171 + AT_rich Low_complexity Low_complexity 1 44 0 2 1116 4263 67 9 9 chr1 69693308 69693868 -127501564 + L1Md_F2 LINE L1 6011 6570 -12 2 1116 1149 139 124 0 chr1 69695508 69695709 -127499723 - URR1A DNA MER1_type 0 226 1 2 1116 204 40 0 0 chr1 69696022 69696047 -127499385 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1116 518 208 0 0 chr1 69697466 69697562 -127497870 - B1F SINE Alu -19 130 35 2 1116 345 291 6 124 chr1 69697653 69697814 -127497618 + B4 SINE B4 1 142 -150 2 1116 346 200 11 101 chr1 69697832 69697921 -127497511 + RSINE1 SINE B4 83 163 -2 2 1116 26 50 0 0 chr1 69697921 69697961 -127497471 + AT_rich Low_complexity Low_complexity 1 40 0 2 1116 264 309 143 24 chr1 69698817 69698943 -127496489 + MLT1A1 LTR MaLR 268 408 0 2 1116 229 273 44 26 chr1 69699108 69699221 -127496211 - L1MA6 LINE L1 -101 6199 6085 2 1116 610 257 7 14 chr1 69699388 69699530 -127495902 - B1_Mur1 SINE Alu -8 141 1 2 1116 345 319 84 78 chr1 69699797 69700144 -127495288 - MLT1A LTR MaLR 0 374 26 2 1116 528 30 0 0 chr1 69700920 69700986 -127494446 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1116 641 231 23 0 chr1 69701253 69701383 -127494049 + B1_Mus2 SINE Alu 1 133 -14 2 1116 438 53 0 0 chr1 69701399 69701456 -127493976 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2 1116 843 205 69 10 chr1 69701470 69701672 -127493760 - B3 SINE B2 0 216 3 2 1116 693 114 0 0 chr1 69701891 69701996 -127493436 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 2 1116 295 295 48 32 chr1 69702847 69702973 -127492459 - L2c LINE L2 -65 3322 3195 2 1116 21 36 0 0 chr1 69704490 69704518 -127490914 + AT_rich Low_complexity Low_complexity 1 28 0 2 1116 25 0 0 0 chr1 69704534 69704559 -127490873 + AT_rich Low_complexity Low_complexity 1 25 0 2 1116 216 286 48 48 chr1 69704777 69704880 -127490552 - MER5B DNA MER1_type -65 113 11 2 1116 195 146 0 0 chr1 69705657 69705698 -127489734 + (G)n Simple_repeat Simple_repeat 1 41 0 2 1116 673 177 92 0 chr1 69705700 69705830 -127489602 - B1_Mus1 SINE Alu -2 146 5 2 1116 186 103 0 0 chr1 69706320 69706349 -127489083 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 1116 247 320 106 67 chr1 69706399 69706607 -127488825 + L3 LINE CR1 4251 4466 -23 2 1116 261 57 0 0 chr1 69706643 69706678 -127488754 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1116 288 0 0 0 chr1 69706678 69706709 -127488723 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1116 1095 102 0 0 chr1 69707846 69707993 -127487439 + B1_Mus1 SINE Alu 2 148 0 2 1116 638 281 108 12 chr1 69708727 69708976 -127486456 + B4A SINE B4 2 274 -18 2 1116 621 164 0 0 chr1 69709103 69709219 -127486213 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1116 276 30 0 0 chr1 69709366 69709399 -127486033 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1116 22 56 0 0 chr1 69710355 69710391 -127485041 + AT_rich Low_complexity Low_complexity 1 36 0 2 1116 223 268 70 47 chr1 69712706 69712792 -127482640 + RSINE1 SINE B4 8 95 -70 2 1116 456 19 0 0 chr1 69712862 69712915 -127482517 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1116 199 0 31 31 chr1 69713998 69714030 -127481402 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1116 198 0 0 0 chr1 69714349 69714371 -127481061 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1116 594 0 0 0 chr1 69715621 69715687 -127479745 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1116 1026 123 7 0 chr1 69715690 69715836 -127479596 - B1_Mus1 SINE Alu -1 147 1 2 1116 553 237 89 0 chr1 69715905 69716040 -127479392 - B1_Mur3 SINE Alu -2 147 1 2 1116 279 0 0 0 chr1 69716628 69716659 -127478773 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1116 696 274 25 50 chr1 69716662 69716862 -127478570 - ID_B1 SINE B4 -28 196 2 2 1116 714 43 0 0 chr1 69717312 69717406 -127478026 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 1116 831 281 39 25 chr1 69717518 69717803 -127477629 + B4A SINE B4 2 290 -2 2 1116 182 33 67 0 chr1 69718016 69718046 -127477386 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1116 825 166 8 14 chr1 69718204 69718355 -127477077 + B1_Mur3 SINE Alu 1 149 0 2 1116 812 55 0 9 chr1 69719662 69719773 -127475659 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 2 1116 32 26 0 0 chr1 69720750 69720789 -127474643 + AT_rich Low_complexity Low_complexity 1 39 0 2 1116 553 294 86 77 chr1 69721021 69721233 -127474199 + MamRep605 Unknown Unknown 68 289 -587 2 1116 570 29 0 0 chr1 69721233 69721301 -127474131 + (TTA)n Simple_repeat Simple_repeat 1 68 0 2 1116 553 294 86 77 chr1 69721301 69721424 -127474008 + MamRep605 Unknown Unknown 290 406 -470 2 1116 232 247 24 72 chr1 69721556 69721639 -127473793 + L2b LINE L2 3285 3363 -12 2 1116 21 36 0 0 chr1 69721842 69721870 -127473562 + AT_rich Low_complexity Low_complexity 1 28 0 2 1116 261 0 0 0 chr1 69722076 69722105 -127473327 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1116 297 0 0 0 chr1 69722221 69722254 -127473178 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1116 596 253 119 16 chr1 69723433 69723626 -127471806 + B3 SINE B2 1 213 -3 2 1116 219 88 0 0 chr1 69724073 69724107 -127471325 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2 1116 311 380 7 7 chr1 69724153 69724291 -127471141 - MIRb SINE MIR -30 238 101 2 1116 507 73 0 0 chr1 69724673 69724741 -127470691 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1116 366 123 0 0 chr1 69725265 69725322 -127470110 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1116 386 200 13 27 chr1 69725338 69725487 -127469945 + (CATA)n Simple_repeat Simple_repeat 4 150 0 2 1116 235 164 27 27 chr1 69725510 69725585 -127469847 + (CATA)n Simple_repeat Simple_repeat 4 78 0 2 1116 338 70 0 0 chr1 69725586 69725629 -127469803 + HAL1-3A_ME LINE L1 1976 2018 -840 2 1116 461 278 94 34 chr1 69726427 69726576 -127468856 + RSINE1 SINE B4 4 161 -4 2 1116 180 0 0 0 chr1 69727907 69727927 -127467505 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1117 240 59 0 0 chr1 69731229 69731263 -127464169 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1117 230 242 16 0 chr1 69731860 69731922 -127463510 + C-rich Low_complexity Low_complexity 3 65 0 3 1117 216 0 0 0 chr1 69732385 69732409 -127463023 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 3 1117 396 118 0 0 chr1 69732588 69732656 -127462776 + (TCC)n Simple_repeat Simple_repeat 1 68 0 3 1117 207 0 0 0 chr1 69732719 69732742 -127462690 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1117 216 247 14 0 chr1 69733906 69733979 -127461453 + G-rich Low_complexity Low_complexity 1 74 0 3 1117 285 151 0 0 chr1 69734011 69734064 -127461368 + (CGGG)n Simple_repeat Simple_repeat 4 56 0 3 1117 203 211 45 27 chr1 69734129 69734241 -127461191 + (CCGCG)n Simple_repeat Simple_repeat 3 116 0 3 1117 23 0 0 0 chr1 69735316 69735339 -127460093 + GC_rich Low_complexity Low_complexity 1 23 0 3 1117 242 309 66 108 chr1 69736491 69736536 -127458896 + L2b LINE L2 3211 3261 -114 3 1117 732 173 58 0 chr1 69736536 69736675 -127458757 - B1_Mus1 SINE Alu -1 147 1 3 1117 242 309 66 108 chr1 69736675 69736796 -127458636 + L2b LINE L2 3262 3370 -5 3 1117 23 54 0 0 chr1 69737415 69737452 -127457980 + AT_rich Low_complexity Low_complexity 1 37 0 3 1117 205 29 29 29 chr1 69738449 69738484 -127456948 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1117 479 307 0 11 chr1 69739412 69739552 -127455880 - B1_Mur4 SINE Alu -5 142 8 3 1117 365 282 52 58 chr1 69739628 69739801 -127455631 - MIRb SINE MIR -11 257 86 3 1117 279 0 0 0 chr1 69739881 69739912 -127455520 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1117 1127 75 0 7 chr1 69740496 69740644 -127454788 + B1_Mus2 SINE Alu 1 147 0 3 1117 789 231 79 15 chr1 69740651 69740853 -127454579 - ID_B1 SINE B4 -5 219 5 3 1117 280 251 86 0 chr1 69740873 69740964 -127454468 + B1_Mur1 SINE Alu 43 149 0 3 1117 27 0 0 0 chr1 69741210 69741237 -127454195 + AT_rich Low_complexity Low_complexity 1 27 0 3 1117 941 133 0 6 chr1 69742833 69742992 -127452440 + (GGGAA)n Simple_repeat Simple_repeat 3 160 0 3 1117 465 19 0 0 chr1 69743611 69743665 -127451767 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1117 335 327 9 0 chr1 69744260 69744373 -127451059 - RMER15 LTR ERVL -40 535 422 3 1117 2936 3 5 127 chr1 69744575 69744993 -127450439 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1117 27641 18 1 2 chr1 69744993 69748268 -127447164 - IAPEz-int LTR ERVK 0 6481 3210 3 1117 7085 73 109 35 chr1 69748267 69749480 -127445952 - IAPEz-int LTR ERVK -5168 1313 67 3 1117 953 86 159 0 chr1 69749451 69749614 -127445818 - IAPEz-int LTR ERVK -6285 196 8 3 1117 2936 3 5 127 chr1 69749614 69750032 -127445400 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1117 670 183 0 34 chr1 69750040 69750159 -127445273 - B1_Mur3 SINE Alu -34 115 1 3 1117 207 188 0 45 chr1 69750859 69750926 -127444506 + A-rich Low_complexity Low_complexity 1 64 0 3 1117 297 145 26 13 chr1 69751187 69751264 -127444168 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1117 237 132 0 0 chr1 69751707 69751745 -127443687 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 3 1117 198 91 0 0 chr1 69752462 69752495 -127442937 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1117 1134 121 11 6 chr1 69752527 69752701 -127442731 - B2_Mm2 SINE B2 -19 176 2 3 1117 362 53 51 39 chr1 69752969 69753047 -127442385 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 3 1117 657 92 0 0 chr1 69753244 69753342 -127442090 + (GA)n Simple_repeat Simple_repeat 1 98 0 3 1117 195 174 28 42 chr1 69753378 69753450 -127441982 + A-rich Low_complexity Low_complexity 4 74 0 3 1117 838 35 18 9 chr1 69753732 69753846 -127441586 + (TTCCC)n Simple_repeat Simple_repeat 2 116 0 3 1117 23 43 0 21 chr1 69756226 69756245 -127439187 + AT_rich Low_complexity Low_complexity 1 19 0 3 1117 980 218 58 15 chr1 69756245 69756450 -127438982 - B3 SINE B2 -1 215 2 3 1117 23 43 0 21 chr1 69756450 69756478 -127438954 + AT_rich Low_complexity Low_complexity 1 28 0 3 1117 181 256 23 93 chr1 69756491 69756577 -127438855 - L2c LINE L2 -12 3375 3296 3 1117 758 248 209 58 chr1 69757027 69757391 -127438041 - MTD LTR MaLR 0 419 1 3 1117 415 247 408 0 chr1 69757493 69757664 -127437768 + B4 SINE B4 1 241 -51 3 1117 308 419 53 16 chr1 69758412 69758657 -127436775 - MLT1J2 LTR MaLR -150 298 45 3 1117 307 246 0 0 chr1 69758724 69758785 -127436647 - B1_Mus1 SINE Alu -87 61 1 3 1117 379 294 158 56 chr1 69758834 69759176 -127436256 + Charlie7 DNA MER1_type 1926 2302 -310 3 1117 369 0 0 0 chr1 69759176 69759217 -127436215 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1117 386 303 101 19 chr1 69759257 69759415 -127436017 + MLT1J2 LTR MaLR 278 448 0 3 1117 732 343 150 42 chr1 69759472 69760120 -127435312 + MLT1J2-int LTR MaLR 45 762 -625 3 1117 339 212 0 0 chr1 69760120 69760205 -127435227 + GA-rich Low_complexity Low_complexity 2 86 0 3 1117 520 295 36 7 chr1 69760220 69760360 -127435072 + RSINE1 SINE B4 5 148 -17 3 1117 23 54 0 0 chr1 69760384 69760421 -127435011 + AT_rich Low_complexity Low_complexity 1 37 0 3 1117 254 361 92 34 chr1 69760634 69760763 -127434669 - MER45C DNA Tip100 -1 952 819 3 1117 207 0 0 0 chr1 69760763 69760786 -127434646 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1117 254 361 92 34 chr1 69760786 69760894 -127434538 - MER45C DNA Tip100 -135 818 702 3 1117 207 0 0 0 chr1 69760915 69760938 -127434494 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1117 417 313 48 37 chr1 69760983 69761172 -127434260 - Charlie7 DNA MER1_type -727 1885 1695 3 1117 254 298 11 67 chr1 69761609 69761699 -127433733 + B1F1 SINE Alu 52 136 -13 3 1117 297 0 0 0 chr1 69761700 69761733 -127433699 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 3 1117 541 106 9 9 chr1 69762233 69762347 -127433085 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 1117 27 49 0 0 chr1 69763190 69763231 -127432201 + AT_rich Low_complexity Low_complexity 1 41 0 3 1117 1317 142 15 0 chr1 69763393 69763598 -127431834 + URR1A DNA MER1_type 2 209 -17 3 1117 589 254 26 104 chr1 69763783 69763976 -127431456 - ORR1D1 LTR MaLR -196 178 1 3 1117 511 315 64 39 chr1 69764439 69764720 -127430712 + B4A SINE B4 3 290 -2 3 1117 297 0 0 0 chr1 69764749 69764782 -127430650 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1117 25 0 0 0 chr1 69764833 69764858 -127430574 + AT_rich Low_complexity Low_complexity 1 25 0 3 1117 1196 61 0 0 chr1 69764858 69765005 -127430427 - B1_Mm SINE Alu 0 147 1 3 1117 275 47 0 0 chr1 69765186 69765229 -127430203 - L1Md_F2 LINE L1 -12 6570 6528 3 1117 428 253 102 102 chr1 69765347 69765563 -127429869 + ID_B1 SINE B4 1 216 -8 3 1117 21 36 0 0 chr1 69765890 69765918 -127429514 + AT_rich Low_complexity Low_complexity 1 28 0 3 1117 245 274 45 38 chr1 69765964 69766097 -127429335 - L1MD1 LINE L1 -2 6240 6107 3 1117 24 32 0 0 chr1 69766805 69766836 -127428596 + AT_rich Low_complexity Low_complexity 1 31 0 3 1117 22 0 0 0 chr1 69767232 69767254 -127428178 + AT_rich Low_complexity Low_complexity 1 22 0 3 1117 207 415 38 15 chr1 69768707 69768839 -127426593 + L2 LINE L2 2787 2921 -498 3 1117 427 30 0 56 chr1 69769300 69769371 -127426061 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 3 1117 991 97 31 49 chr1 69769371 69769533 -127425899 - B2_Mm2 SINE B2 -36 159 1 3 1117 277 276 157 7 chr1 69769559 69769841 -127425591 - L1_Rod LINE L1 -37 5810 5537 3 1117 34 42 0 0 chr1 69769850 69769898 -127425534 + AT_rich Low_complexity Low_complexity 1 48 0 3 1117 519 85 0 0 chr1 69769975 69770057 -127425375 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1117 378 61 0 0 chr1 69770057 69770106 -127425326 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1117 286 267 75 33 chr1 69770682 69770802 -127424630 - L2 LINE L2 -847 2572 2448 3 1117 366 289 77 94 chr1 69770823 69771056 -127424376 - RLTR14 LTR ERV1 0 382 154 3 1117 21 36 0 0 chr1 69772140 69772168 -127423264 + AT_rich Low_complexity Low_complexity 1 28 0 3 1117 213 268 14 27 chr1 69772906 69772979 -127422453 + (CATA)n Simple_repeat Simple_repeat 4 75 0 3 1117 1326 239 78 20 chr1 69772981 69773327 -127422105 + ORR1D2 LTR MaLR 5 370 0 3 1117 21 0 0 0 chr1 69773491 69773512 -127421920 + AT_rich Low_complexity Low_complexity 1 21 0 3 1117 441 0 0 0 chr1 69773531 69773580 -127421852 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 3 1117 1215 76 0 0 chr1 69773581 69773738 -127421694 - B2_Mm2 SINE B2 -37 158 2 3 1117 32 75 0 0 chr1 69774099 69774166 -127421266 + AT_rich Low_complexity Low_complexity 1 67 0 3 1117 357 267 26 0 chr1 69774967 69775081 -127420351 + MIR SINE MIR 36 174 -94 3 1117 33 25 0 0 chr1 69776283 69776323 -127419109 + AT_rich Low_complexity Low_complexity 1 40 0 3 1117 318 36 17 35 chr1 69776669 69776727 -127418705 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 3 1117 438 20 0 0 chr1 69776995 69777046 -127418386 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1117 399 312 83 15 chr1 69777263 69777496 -127417936 - MLT1B LTR MaLR -213 254 1 3 1117 24 0 0 0 chr1 69777603 69777627 -127417805 + AT_rich Low_complexity Low_complexity 1 24 0 3 1117 702 266 119 34 chr1 69777727 69777932 -127417500 + B4 SINE B4 2 233 -59 3 1117 4113 189 55 30 chr1 69777932 69778818 -127416614 + RMER13B LTR ERVK 1 908 0 3 1117 702 266 119 34 chr1 69778818 69778880 -127416552 + B4 SINE B4 234 292 0 3 1117 1029 95 0 0 chr1 69778904 69779073 -127416359 + (GA)n Simple_repeat Simple_repeat 2 170 0 3 1117 32 0 0 23 chr1 69779159 69779179 -127416253 + AT_rich Low_complexity Low_complexity 1 20 0 3 1117 5414 42 1 8 chr1 69779179 69779843 -127415589 - L1Md_F2 LINE L1 -1 6581 5922 3 1117 32 0 0 23 chr1 69779843 69779865 -127415567 + AT_rich Low_complexity Low_complexity 1 22 0 3 1117 417 250 73 9 chr1 69779870 69779979 -127415453 - RMER5 LTR ERV1 -46 488 373 3 1117 276 130 0 0 chr1 69780446 69780492 -127414940 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1117 399 73 0 0 chr1 69780900 69780955 -127414477 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1117 26 0 0 0 chr1 69781125 69781151 -127414281 + AT_rich Low_complexity Low_complexity 1 26 0 3 1117 762 218 0 13 chr1 69781703 69781852 -127413580 - B1_Mur2 SINE Alu -2 147 1 4 1117 650 257 14 0 chr1 69781852 69781991 -127413441 - B1_Mur1 SINE Alu -7 142 1 4 1117 225 0 0 0 chr1 69782543 69782568 -127412864 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 1117 886 139 7 14 chr1 69782570 69782716 -127412716 - B1_Mur3 SINE Alu 0 149 5 4 1117 23 0 0 0 chr1 69782956 69782979 -127412453 + AT_rich Low_complexity Low_complexity 1 23 0 4 1117 377 177 13 0 chr1 69783381 69783460 -127411972 + T-rich Low_complexity Low_complexity 4 83 0 4 1117 670 153 29 0 chr1 69783446 69783583 -127411849 + CT-rich Low_complexity Low_complexity 4 144 0 4 1117 506 186 35 145 chr1 69783594 69783612 -127411820 - B1_Mur4 SINE Alu -20 130 115 4 1117 545 28 0 14 chr1 69783612 69783684 -127411748 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1117 506 186 35 145 chr1 69783684 69783810 -127411622 - B1_Mur4 SINE Alu -36 114 2 4 1117 233 277 129 24 chr1 69783876 69783961 -127411471 + PB1D10 SINE Alu 14 107 -13 4 1117 333 394 68 21 chr1 69784025 69784261 -127411171 - LTR16E2 LTR ERVL -5 563 317 4 1117 306 0 0 0 chr1 69784832 69784866 -127410566 + (CTGTG)n Simple_repeat Simple_repeat 3 36 0 4 1117 234 81 0 0 chr1 69786249 69786286 -127409146 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 1117 1193 55 7 0 chr1 69786286 69786432 -127409000 - B1_Mus1 SINE Alu 0 148 2 4 1117 491 331 28 51 chr1 69786567 69786745 -127408687 - ID_B1 SINE B4 -2 222 49 4 1117 528 160 0 0 chr1 69787175 69787275 -127408157 + GA-rich Low_complexity Low_complexity 1 100 0 4 1117 979 184 50 6 chr1 69787502 69787682 -127407750 + B3 SINE B2 1 188 -28 4 1117 516 16 0 0 chr1 69787693 69787754 -127407678 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1117 25 0 0 0 chr1 69787757 69787782 -127407650 + AT_rich Low_complexity Low_complexity 1 25 0 4 1117 573 217 15 60 chr1 69787797 69787998 -127407434 + Lx7 LINE L1 5706 5897 -1799 4 1117 1393 160 0 4 chr1 69788164 69788396 -127407036 + L1VL1 LINE L1 36 266 -6156 4 1117 4877 101 53 13 chr1 69788396 69789823 -127405609 + L1Md_F LINE L1 277 1763 -4120 4 1117 4351 63 2 2 chr1 69789820 69790396 -127405036 + L1Md_F LINE L1 5115 5690 -193 4 1117 1460 57 0 10 chr1 69790396 69790590 -127404842 - MTA_Mm LTR MaLR -204 192 1 4 1117 675 287 206 30 chr1 69790591 69791101 -127404331 - L1M2 LINE L1 -2078 4062 3463 4 1117 387 220 3 12 chr1 69791130 69791212 -127404220 - B1_Mur4 SINE Alu -54 96 13 4 1117 361 334 34 34 chr1 69791237 69791624 -127403808 - L1M2 LINE L1 -3121 3022 2636 4 1117 387 340 6 13 chr1 69791910 69792084 -127403348 - MIR SINE MIR -72 190 17 4 1117 423 0 0 0 chr1 69792897 69792944 -127402488 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1117 425 327 76 44 chr1 69793503 69793778 -127401654 + B4A SINE B4 1 284 -8 4 1117 198 0 0 0 chr1 69794907 69794929 -127400503 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1117 22 0 0 0 chr1 69796355 69796377 -127399055 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 328 294 92 60 chr1 69796773 69797121 -127398311 + L1M5 LINE L1 2480 2838 -3308 4 1117 420 298 125 61 chr1 69797761 69798072 -127397360 + MLT1A0 LTR MaLR 4 334 -31 4 1117 207 0 0 0 chr1 69798772 69798795 -127396637 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1117 25 51 0 0 chr1 69798962 69799001 -127396431 + AT_rich Low_complexity Low_complexity 1 39 0 4 1117 227 279 41 41 chr1 69799001 69799098 -127396334 - Lx8 LINE L1 -5 7468 7372 4 1117 436 81 27 0 chr1 69799140 69799214 -127396218 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1117 491 231 100 0 chr1 69799283 69799413 -127396019 - Lx8 LINE L1 -898 6575 6433 4 1117 516 32 0 0 chr1 69800136 69800198 -127395234 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1117 790 219 52 0 chr1 69800450 69800605 -127394827 + MTEa LTR MaLR 1 163 -216 4 1117 755 297 63 26 chr1 69800601 69800871 -127394561 + MTE-int LTR MaLR 419 698 -882 4 1117 4960 104 13 44 chr1 69800889 69801643 -127393789 + Lx3C LINE L1 6239 6969 -7 4 1117 300 53 0 0 chr1 69801650 69801688 -127393744 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 1117 237 186 34 0 chr1 69801729 69801788 -127393644 + L1MB4 LINE L1 6120 6180 0 4 1117 1728 289 155 20 chr1 69801815 69802415 -127393017 + MTE-int LTR MaLR 714 1394 -186 4 1117 785 309 28 28 chr1 69802415 69802698 -127392734 + B4A SINE B4 2 284 -8 4 1117 391 310 135 31 chr1 69802816 69802979 -127392453 - B3A SINE B2 -16 182 3 4 1117 204 97 0 0 chr1 69803013 69803044 -127392388 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1117 259 329 38 12 chr1 69803044 69803124 -127392308 - ID4_ SINE ID 0 83 2 4 1117 380 300 25 8 chr1 69803129 69803250 -127392182 + MTE-int LTR MaLR 1417 1539 -41 4 1117 642 233 161 22 chr1 69803256 69803480 -127391952 - Lx9 LINE L1 -272 7372 7118 4 1117 1440 164 70 81 chr1 69803557 69803622 -127391810 - Lx7 LINE L1 -329 7367 7326 4 1117 264 30 0 0 chr1 69803622 69803655 -127391777 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 1117 1440 164 70 81 chr1 69803655 69803948 -127391484 - Lx7 LINE L1 -371 7325 7013 4 1117 369 0 0 0 chr1 69803953 69803994 -127391438 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1117 388 137 19 19 chr1 69804010 69804114 -127391318 + Lx9 LINE L1 7540 7643 -1 4 1117 341 187 147 0 chr1 69804172 69804247 -127391185 + MTEa LTR MaLR 5 90 -289 4 1117 396 0 0 0 chr1 69808246 69808290 -127387142 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1117 188 256 0 39 chr1 69808334 69808513 -127386919 + (TG)n Simple_repeat Simple_repeat 2 173 0 4 1117 210 128 0 0 chr1 69808973 69809012 -127386420 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1117 207 350 124 8 chr1 69809417 69809538 -127385894 + MIR SINE MIR 110 244 -18 4 1117 182 289 65 13 chr1 69809919 69809996 -127385436 + L3 LINE CR1 2639 2719 -1770 4 1117 531 0 0 0 chr1 69811361 69811420 -127384012 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1117 558 0 0 0 chr1 69811420 69811481 -127383951 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1117 186 362 6 86 chr1 69812564 69812727 -127382705 - MIRb SINE MIR -14 254 105 4 1117 277 333 28 19 chr1 69812970 69813077 -127382355 + MIRb SINE MIR 123 230 -38 4 1117 180 359 120 0 chr1 69813337 69813504 -127381928 + MIRc SINE MIR 8 194 -74 4 1117 564 127 48 6 chr1 69814015 69814181 -127381251 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 4 1117 284 70 0 23 chr1 69814182 69814226 -127381206 + (TTA)n Simple_repeat Simple_repeat 3 45 0 4 1117 315 0 0 0 chr1 69815077 69815112 -127380320 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1117 626 259 0 0 chr1 69817427 69817574 -127377858 - B1_Mur2 SINE Alu 0 149 3 4 1117 210 45 44 22 chr1 69818925 69818970 -127376462 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1117 192 127 36 18 chr1 69819619 69819675 -127375757 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 4 1117 25 31 0 0 chr1 69820102 69820134 -127375298 + AT_rich Low_complexity Low_complexity 1 32 0 4 1117 463 308 13 6 chr1 69820667 69820824 -127374608 - HAL1-2a_MD LINE L1 -522 2502 2345 4 1117 319 279 39 154 chr1 69821695 69821877 -127373555 - RSINE1 SINE B4 -2 163 3 4 1117 180 0 0 0 chr1 69821921 69821941 -127373491 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1117 654 198 154 0 chr1 69822058 69822082 -127373350 + B3 SINE B2 3 27 -189 4 1117 1014 166 59 36 chr1 69822082 69822301 -127373131 + URR1B DNA MER1_type 2 225 0 4 1117 654 198 154 0 chr1 69822301 69822438 -127372994 + B3 SINE B2 28 188 -28 4 1117 22 0 0 0 chr1 69822506 69822528 -127372904 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 354 283 27 54 chr1 69822876 69822988 -127372444 + RSINE1 SINE B4 16 124 -41 4 1117 261 57 0 0 chr1 69823019 69823054 -127372378 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 4 1117 459 258 27 96 chr1 69823806 69823952 -127371480 + B1F SINE Alu 6 141 -8 4 1117 592 149 28 17 chr1 69824337 69824514 -127370918 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1117 363 105 58 29 chr1 69824527 69824664 -127370768 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1117 2082 245 69 16 chr1 69824683 69825310 -127370122 - Lx7 LINE L1 -399 7297 6638 4 1117 5584 226 93 8 chr1 69825307 69826392 -127369040 + Lx6 LINE L1 5605 6906 -790 4 1117 459 0 0 0 chr1 69826392 69826443 -127368989 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1117 5584 217 40 7 chr1 69826443 69826965 -127368467 + Lx6 LINE L1 6896 7421 -39 4 1117 1045 295 11 45 chr1 69826963 69827315 -127368117 + Lx7 LINE L1 6286 6625 -1071 4 1117 324 0 0 0 chr1 69828668 69828704 -127366728 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1117 226 284 133 33 chr1 69829068 69829188 -127366244 + MER5A1 DNA MER1_type 28 159 -7 4 1117 227 309 35 112 chr1 69829953 69830150 -127365282 + MARNA DNA Mariner 262 443 -143 4 1117 450 336 22 0 chr1 69830217 69830354 -127365078 + ID_B1 SINE B4 84 223 -1 4 1117 568 51 13 13 chr1 69831664 69831743 -127363689 + B1_Mus2 SINE Alu 69 147 0 4 1117 281 0 77 0 chr1 69831743 69831782 -127363650 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 4 1117 527 25 12 36 chr1 69832321 69832405 -127363027 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1117 895 167 0 16 chr1 69832537 69832606 -127362826 + polypyrimidine Low_complexity Low_complexity 112 180 0 4 1117 1599 6 0 0 chr1 69832606 69832786 -127362646 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1117 895 167 0 16 chr1 69832786 69832899 -127362533 + polypyrimidine Low_complexity Low_complexity 1 111 0 4 1117 278 83 0 0 chr1 69832899 69832935 -127362497 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 4 1117 231 356 0 0 chr1 69835558 69835617 -127359815 + MIR SINE MIR 88 146 -116 4 1117 1736 80 8 0 chr1 69835736 69835973 -127359459 - MTB LTR MaLR -161 239 1 4 1117 212 0 36 0 chr1 69835998 69836026 -127359406 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 4 1117 438 20 0 0 chr1 69836761 69836812 -127358620 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1117 6068 65 112 7 chr1 69838043 69838957 -127356475 - L1_Mus3 LINE L1 0 6638 5629 4 1117 2710 158 83 98 chr1 69840393 69841094 -127354338 + RMER6C LTR ERVK 1 690 0 4 1117 491 338 65 10 chr1 69842009 69842217 -127353215 - MER20 DNA MER1_type 0 219 2 4 1117 339 258 60 8 chr1 69842289 69842422 -127353010 - Arthur1 DNA Tip100 -40 3907 3768 5 1117 582 15 0 0 chr1 69842557 69842624 -127352808 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1117 654 217 68 20 chr1 69842648 69842794 -127352638 - B3A SINE B2 -39 159 7 5 1117 278 350 87 57 chr1 69842906 69843239 -127352193 - Arthur1 DNA Tip100 -3096 851 509 5 1117 498 287 66 81 chr1 69843414 69843466 -127351966 + B3A SINE B2 5 64 -134 5 1117 2329 89 0 58 chr1 69843466 69843811 -127351621 - ORR1A3 LTR MaLR -1 325 1 5 1117 498 287 66 81 chr1 69843811 69843955 -127351477 + B3A SINE B2 65 198 0 5 1117 376 295 120 32 chr1 69844319 69844561 -127350871 - L1ME1 LINE L1 -243 5919 5656 5 1117 1109 75 0 26 chr1 69845188 69845326 -127350106 + B1_Mus1 SINE Alu 2 139 -9 5 1117 249 33 0 0 chr1 69845326 69845356 -127350076 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1117 1109 75 0 26 chr1 69845356 69845368 -127350064 + B1_Mus1 SINE Alu 140 148 0 5 1117 304 253 189 14 chr1 69845394 69845542 -127349890 - HAL1-3A_ME LINE L1 -745 2113 1940 5 1117 327 381 58 19 chr1 69845804 69846010 -127349422 + LTR89 LTR ERVL? 561 774 -105 5 1117 200 234 0 21 chr1 69846402 69846450 -127348982 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 1117 434 264 49 47 chr1 69846452 69846776 -127348656 - L1M3 LINE L1 -546 5766 5434 5 1117 804 232 58 31 chr1 69847078 69847269 -127348163 + B3 SINE B2 1 196 -20 5 1117 258 32 0 0 chr1 69847269 69847300 -127348132 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 5 1117 476 340 65 59 chr1 69848561 69848902 -127346530 + MER110 LTR ERV1 115 457 -34 5 1117 198 0 0 0 chr1 69848904 69848926 -127346506 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5 1117 203 295 88 33 chr1 69849075 69849166 -127346266 + MIR3 SINE MIR 113 208 0 5 1117 36 40 0 0 chr1 69849311 69849361 -127346071 + AT_rich Low_complexity Low_complexity 1 50 0 5 1117 363 44 0 0 chr1 69849412 69849457 -127345975 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1117 1257 222 11 11 chr1 69849457 69849744 -127345688 - Lx9 LINE L1 -168 7476 7190 5 1117 2598 202 18 14 chr1 69849752 69850392 -127345040 - Lx2B LINE L1 -7 6990 6314 5 1117 1699 200 29 21 chr1 69850390 69850773 -127344659 - Lx9 LINE L1 -444 7200 6815 5 1117 544 261 185 8 chr1 69850773 69851032 -127344400 + Lx9 LINE L1 6178 6482 -1162 5 1117 28691 66 0 0 chr1 69851029 69855655 -127339777 + L1Md_F2 LINE L1 1935 6562 -20 5 1117 521 15 15 0 chr1 69855655 69855721 -127339711 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1117 978 226 31 0 chr1 69855726 69855952 -127339480 + Lx9 LINE L1 6481 6713 -931 5 1117 261 0 0 0 chr1 69855962 69855991 -127339441 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 5 1117 303 333 52 0 chr1 69855997 69856093 -127339339 - PB1D7 SINE Alu -11 109 9 5 1117 988 191 172 4 chr1 69856304 69856566 -127338866 + Lx5 LINE L1 6731 7036 -14 5 1117 189 74 0 0 chr1 69856566 69856593 -127338839 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 1117 649 277 11 83 chr1 69857164 69857345 -127338087 - B3A SINE B2 -26 172 5 5 1117 326 214 0 0 chr1 69857362 69857418 -127338014 - BC1_Mm scRNA scRNA -95 57 2 5 1117 26 30 0 0 chr1 69858370 69858403 -127337029 + AT_rich Low_complexity Low_complexity 1 33 0 5 1117 2532 273 84 80 chr1 69859422 69859530 -127335902 + Lx8 LINE L1 4238 4330 -1550 5 1117 198 0 0 0 chr1 69859530 69859552 -127335880 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 5 1117 2532 273 84 80 chr1 69859552 69861066 -127334366 + Lx8 LINE L1 4331 5866 -14 5 139 1585 194 94 70 chr1 69861076 69861709 -127333723 + BGLII_B LTR ERVK 1 529 -32 5 1118 731 338 148 31 chr1 69861775 69862572 -127332860 + Lx8 LINE L1 5879 6768 -705 5 1118 1051 196 85 0 chr1 69862574 69862773 -127332659 - URR1B DNA MER1_type -2 223 8 5 1118 749 346 71 43 chr1 69862784 69863321 -127332111 + Lx8 LINE L1 6764 7315 -158 5 1118 28 0 0 0 chr1 69864551 69864579 -127330853 + AT_rich Low_complexity Low_complexity 1 28 0 5 1118 1260 119 0 5 chr1 69864627 69864812 -127330620 + B2_Mm2 SINE B2 2 185 -10 5 1118 21 36 0 0 chr1 69864844 69864872 -127330560 + AT_rich Low_complexity Low_complexity 1 28 0 5 1118 1600 207 14 49 chr1 69865221 69865571 -127329861 + RMER12B LTR ERVK 1 338 -1066 5 1118 3681 72 12 20 chr1 69865571 69866311 -127329121 - Lx3A LINE L1 -891 6090 5359 5 1118 887 85 132 0 chr1 69866340 69866469 -127328963 - B1_Mm SINE Alu 0 147 2 5 1118 4645 127 24 6 chr1 69866506 69867226 -127328206 + Lx3B LINE L1 6237 6969 -4 5 1118 186 209 0 0 chr1 69867243 69867286 -127328146 + (CAT)n Simple_repeat Simple_repeat 3 45 0 5 1118 202 239 0 0 chr1 69867358 69867404 -127328028 + T-rich Low_complexity Low_complexity 1 46 0 5 1118 465 172 0 0 chr1 69867652 69867745 -127327687 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 1118 264 59 0 0 chr1 69867747 69867781 -127327651 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1118 709 211 233 15 chr1 69867783 69868110 -127327322 + RMER12B LTR ERVK 983 1380 -24 5 1118 366 305 77 7 chr1 69868130 69868285 -127327147 - LTR40b LTR ERVL -19 443 278 5 1118 266 213 26 13 chr1 69868484 69868560 -127326872 - MTE2a LTR MaLR 0 379 303 5 1118 1987 125 25 19 chr1 69868560 69868879 -127326553 + ORR1A4 LTR MaLR 1 321 -8 5 1118 247 247 0 25 chr1 69869112 69869191 -127326241 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1118 787 277 15 23 chr1 69869291 69869550 -127325882 + Lx7 LINE L1 7160 7416 -280 5 1118 456 269 45 88 chr1 69869584 69869774 -127325658 - L1MD3 LINE L1 -914 7081 6884 5 1118 1578 10 0 0 chr1 69869774 69869978 -127325454 + (TTC)n Simple_repeat Simple_repeat 1 204 0 5 1118 456 269 45 88 chr1 69869978 69870140 -127325292 - L1MD3 LINE L1 -1112 6883 6744 5 1118 207 0 0 0 chr1 69871166 69871189 -127324243 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5 1118 908 67 117 0 chr1 69871189 69871309 -127324123 - B1_Mus2 SINE Alu -13 134 1 5 1118 210 71 0 0 chr1 69871479 69871507 -127323925 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1118 319 289 114 16 chr1 69872027 69872150 -127323282 + LTR40c LTR ERVL 7 141 -324 5 1118 23 0 0 0 chr1 69872496 69872519 -127322913 + AT_rich Low_complexity Low_complexity 1 23 0 5 1118 267 250 22 22 chr1 69872685 69872775 -127322657 + CT-rich Low_complexity Low_complexity 6 95 0 5 1118 588 29 0 0 chr1 69873253 69873323 -127322109 + (CAAG)n Simple_repeat Simple_repeat 2 71 0 5 1118 306 0 0 0 chr1 69873995 69874029 -127321403 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1118 224 91 0 22 chr1 69874538 69874583 -127320849 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 5 1118 1070 70 35 14 chr1 69874583 69874727 -127320705 - B1_Mus2 SINE Alu 0 147 1 5 1118 244 244 0 13 chr1 69875253 69875332 -127320100 - Lx7 LINE L1 -16 7680 7603 5 1118 2063 154 144 39 chr1 69875440 69875905 -127319527 - RLTR28 LTR ERVL -10 514 1 5 1118 544 286 22 60 chr1 69875980 69876248 -127319184 - Lx7 LINE L1 -376 7320 7063 5 1118 2287 161 45 2 chr1 69876994 69877398 -127318034 + MTC LTR MaLR 1 421 0 5 1118 249 306 28 0 chr1 69877416 69877488 -127317944 + MTD LTR MaLR 46 119 -300 5 1118 548 101 18 35 chr1 69877503 69877616 -127317816 + CT-rich Low_complexity Low_complexity 1 111 0 5 1118 684 161 0 8 chr1 69877616 69877735 -127317697 - B1_Mur4 SINE Alu 0 150 33 5 1118 506 311 33 0 chr1 69877738 69877889 -127317543 + MTD LTR MaLR 109 264 -155 5 1118 2800 12 3 50 chr1 69878087 69878430 -127317002 + IAPLTR2b LTR ERVK 1 327 0 5 1118 201 162 0 26 chr1 69879402 69879440 -127315992 + CT-rich Low_complexity Low_complexity 3 39 0 5 1118 21 36 0 0 chr1 69879503 69879531 -127315901 + AT_rich Low_complexity Low_complexity 1 28 0 5 1118 291 114 0 0 chr1 69879616 69879660 -127315772 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1118 210 37 0 0 chr1 69880061 69880088 -127315344 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1118 254 167 0 0 chr1 69880179 69880221 -127315211 + B2_Mm2 SINE B2 1 42 -153 5 1118 314 265 48 36 chr1 69880473 69880637 -127314795 + RLTR13D3 LTR ERVK 983 1073 -41 5 1118 195 42 0 0 chr1 69880637 69880661 -127314771 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1118 303 304 96 0 chr1 69880814 69880939 -127314493 - MER5A1 DNA MER1_type -27 139 3 5 1118 221 306 0 0 chr1 69884477 69884526 -127310906 - ID4 SINE ID -3 80 32 5 1118 243 0 0 0 chr1 69884538 69884565 -127310867 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1118 785 324 123 12 chr1 69884621 69884946 -127310486 + MLT1F LTR MaLR 131 491 -57 5 1118 280 206 27 0 chr1 69884956 69885029 -127310403 - L1MA9 LINE L1 -9 6303 6229 5 1118 1130 225 91 9 chr1 69885084 69885402 -127310030 - RLTR15 LTR ERVK -10 349 6 5 1118 232 206 222 0 chr1 69885415 69885478 -127309954 + ORR1D2 LTR MaLR 53 129 -241 5 1118 233 56 28 0 chr1 69885480 69885516 -127309916 + ORR1D2 LTR MaLR 334 370 0 5 1118 434 277 112 35 chr1 69885742 69886053 -127309379 - L1MA6 LINE L1 -364 5936 5602 5 1118 442 301 30 5 chr1 69886086 69886283 -127309149 - L1MA9 LINE L1 -158 6154 5953 5 1118 1296 243 110 66 chr1 69886296 69887385 -127308047 - RMER1B Other Other -9 1057 65 5 1118 192 377 49 0 chr1 69888059 69888181 -127307251 + MIR SINE MIR 114 241 -21 5 1118 230 98 49 0 chr1 69888228 69888269 -127307163 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 5 1118 345 47 0 0 chr1 69888956 69888999 -127306433 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1118 500 261 51 74 chr1 69890405 69890464 -127304968 + Tigger7 DNA MER2_type 2282 2329 -162 5 1118 397 0 38 0 chr1 69890464 69890517 -127304915 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 5 1118 1095 52 0 7 chr1 69890517 69890654 -127304778 - B1_Mm SINE Alu -10 137 2 5 1118 500 261 51 74 chr1 69890654 69890808 -127304624 + Tigger7 DNA MER2_type 2330 2490 -1 5 1118 214 232 36 0 chr1 69892101 69892157 -127303275 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 1118 26 82 0 0 chr1 69892323 69892384 -127303048 + AT_rich Low_complexity Low_complexity 1 61 0 5 1118 603 221 53 0 chr1 69892643 69892774 -127302658 + B1_Mur1 SINE Alu 2 139 -10 5 1118 252 257 176 0 chr1 69892798 69892872 -127302560 + 4.5SRNA scRNA scRNA 1 87 -7 5 1118 259 250 0 18 chr1 69892829 69892886 -127302546 + PB1D10 SINE Alu 47 102 -15 5 1118 303 272 101 41 chr1 69892872 69893041 -127302391 + Charlie1a DNA MER1_type 1277 1455 0 5 1118 539 259 74 18 chr1 69894399 69894578 -127300854 - B3A SINE B2 0 216 28 6 1118 3981 191 58 37 chr1 69894581 69895519 -127299913 - RMER17B LTR ERVK 0 958 2 6 1118 21 0 0 0 chr1 69895530 69895551 -127299881 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 23 0 0 0 chr1 69895565 69895588 -127299844 + AT_rich Low_complexity Low_complexity 1 23 0 6 1118 1445 182 28 28 chr1 69896872 69897155 -127298277 - MTC LTR MaLR 0 421 139 6 1118 380 258 71 24 chr1 69897124 69897251 -127298181 - MTD-int LTR MaLR -1125 133 1 6 1118 1704 222 34 7 chr1 69897251 69897659 -127297773 - MTD LTR MaLR 0 419 1 6 1118 2638 277 63 77 chr1 69897673 69897950 -127297482 + Ricksha DNA MuDR 1261 1556 -1690 6 1118 1243 94 44 0 chr1 69897950 69898131 -127297301 - B2_Mm2 SINE B2 -4 191 3 6 1118 2638 277 63 77 chr1 69898131 69898367 -127297065 + Ricksha DNA MuDR 1557 1759 -1487 6 1118 2136 193 40 5 chr1 69898367 69898793 -127296639 + Lx2A1 LINE L1 6563 7003 -5 6 1118 2638 277 63 77 chr1 69898793 69899597 -127295835 + Ricksha DNA MuDR 1760 2560 -686 6 1118 603 224 139 93 chr1 69900112 69900328 -127295104 - MTEb LTR MaLR -4 375 150 6 1118 537 307 47 0 chr1 69900775 69900925 -127294507 - MTEb LTR MaLR -213 166 10 6 1118 23 0 0 0 chr1 69901618 69901641 -127293791 + AT_rich Low_complexity Low_complexity 1 23 0 6 1118 360 404 12 6 chr1 69902058 69902225 -127293207 + MER58A DNA MER1_type 6 173 -51 6 1118 22 0 0 0 chr1 69902293 69902315 -127293117 + AT_rich Low_complexity Low_complexity 1 22 0 6 1118 208 373 187 26 chr1 69903683 69904636 -127290796 + L2 LINE L2 1956 3061 -358 6 1118 333 208 0 0 chr1 69906325 69906397 -127289035 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1118 1084 258 57 81 chr1 69907829 69908213 -127287219 + MTEb LTR MaLR 2 376 -3 6 1118 1498 266 82 50 chr1 69908216 69908731 -127286701 + MTEb-int LTR MaLR 1 531 -1049 6 1118 291 262 98 76 chr1 69908780 69908912 -127286520 + RMER30 DNA MER1_type 46 180 -22 6 1118 2782 274 108 56 chr1 69908917 69909150 -127286282 + MTEb-int LTR MaLR 540 748 -832 6 1118 1107 76 7 0 chr1 69909150 69909295 -127286137 - B1_Mus1 SINE Alu 0 148 3 6 1118 2782 274 108 56 chr1 69909295 69910050 -127285382 + MTEb-int LTR MaLR 749 1580 0 6 1118 808 284 74 4 chr1 69910050 69910280 -127285152 + MTEb LTR MaLR 1 246 -133 6 1118 272 291 64 38 chr1 69910390 69910654 -127284778 - L1M5 LINE L1 -622 5542 5272 6 1118 189 0 0 0 chr1 69911463 69911484 -127283948 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1118 747 260 80 0 chr1 69912989 69913189 -127282243 - B3 SINE B2 0 216 1 6 1118 276 111 0 0 chr1 69913541 69913586 -127281846 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1118 3546 154 23 102 chr1 69913726 69914122 -127281310 - RLTR17 LTR ERVK 0 692 303 6 1118 1203 34 0 0 chr1 69914122 69914268 -127281164 + B1_Mm SINE Alu 2 147 0 6 1118 3546 154 23 102 chr1 69914268 69914623 -127280809 - RLTR17 LTR ERVK -390 302 1 6 1118 805 274 70 22 chr1 69915140 69915368 -127280064 + MTEa LTR MaLR 141 379 0 6 1118 763 349 73 18 chr1 69917584 69917914 -127277518 - ORR1E LTR MaLR -4 355 8 6 1118 1616 292 81 12 chr1 69917896 69918405 -127277027 - ORR1E-int LTR MaLR -28 1552 1009 6 1118 551 295 60 0 chr1 69918845 69918994 -127276438 + B3A SINE B2 6 163 -35 6 1118 251 121 17 0 chr1 69919153 69919211 -127276221 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1118 612 179 36 0 chr1 69919237 69919349 -127276083 - ID_B1 SINE B4 -6 218 103 6 1118 324 287 67 37 chr1 69919349 69919371 -127276061 - B1_Mus1 SINE Alu -8 140 3 6 1118 285 183 0 0 chr1 69919883 69919943 -127275489 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1118 682 300 199 4 chr1 69919971 69920212 -127275220 - B4 SINE B4 -3 289 2 6 1118 1310 107 0 5 chr1 69920479 69920667 -127274765 + B2_Mm2 SINE B2 1 187 -8 6 1118 7664 155 62 47 chr1 69921674 69921857 -127273575 - MYSERV6-int LTR ERVK -7391 1568 1383 6 1118 7328 18 0 0 chr1 69921857 69922679 -127272753 - RLTR13B2 LTR ERVK 0 822 1 6 1118 7664 155 62 47 chr1 69922679 69924039 -127271393 - MYSERV6-int LTR ERVK -7577 1382 2 6 1118 510 150 0 0 chr1 69924039 69924119 -127271313 - RMER6B LTR ERVK 0 461 382 6 1118 1141 149 0 0 chr1 69924123 69924304 -127271128 + URR1A DNA MER1_type 46 226 0 6 1118 477 0 0 0 chr1 69924356 69924409 -127271023 + (TAG)n Simple_repeat Simple_repeat 3 55 0 6 1118 1269 285 44 17 chr1 69925005 69925365 -127270067 - MTEa LTR MaLR -1 378 9 6 1118 554 275 106 0 chr1 69926174 69926363 -127269069 + B3 SINE B2 2 210 -6 6 1118 7978 43 1 6 chr1 69926743 69928121 -127267311 - L1Md_F2 LINE L1 0 6582 5214 6 1118 3771 82 0 0 chr1 69928116 69928616 -127266816 + L1Md_F2 LINE L1 4735 5234 -649 6 1118 4054 41 0 0 chr1 69929547 69930030 -127265402 + L1Md_T LINE L1 6099 6581 -1 6 1118 270 0 0 0 chr1 69930067 69930097 -127265335 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1118 429 324 21 21 chr1 69930415 69930604 -127264828 - Lx9 LINE L1 -178 7466 7278 6 1118 926 260 107 17 chr1 69930954 69931299 -127264133 + MTEb LTR MaLR 4 379 0 6 1118 748 303 38 81 chr1 69931299 69931694 -127263738 + MTEb-int LTR MaLR 1 378 -1202 6 1118 275 325 0 36 chr1 69931692 69931775 -127263657 - MTE-int LTR MaLR -1013 567 488 6 1118 363 322 62 34 chr1 69931777 69931954 -127263478 + MTEb-int LTR MaLR 1022 1203 -377 6 1118 1603 243 44 6 chr1 69932026 69932390 -127263042 + MTD LTR MaLR 37 414 -5 6 1118 445 301 74 38 chr1 69932402 69932796 -127262636 + L1MC3 LINE L1 6906 7313 -472 6 1118 310 348 21 21 chr1 69932919 69933060 -127262372 + L1MC3 LINE L1 7428 7568 -217 6 1118 25 31 0 0 chr1 69933299 69933331 -127262101 + AT_rich Low_complexity Low_complexity 1 32 0 6 1118 465 162 0 0 chr1 69933749 69933823 -127261609 - B2_Mm2 SINE B2 -103 92 19 6 1118 230 309 36 22 chr1 69935187 69935326 -127260106 + L1MEa LINE L1 695 835 -5235 6 1118 417 20 0 0 chr1 69935335 69935385 -127260047 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1118 243 20 0 109 chr1 69935824 69935879 -127259553 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 6 1118 1021 85 0 0 chr1 69935894 69936024 -127259408 - B1_Mus1 SINE Alu -18 130 1 6 1118 633 27 0 0 chr1 69936044 69936119 -127259313 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 6 1118 689 209 7 21 chr1 69936119 69936261 -127259171 - B1_Mur4 SINE Alu -9 141 2 6 1118 1010 58 0 28 chr1 69937078 69937220 -127258212 + L1_Mus1 LINE L1 6430 6567 0 6 1118 8158 125 19 18 chr1 69937277 69938620 -127256812 - Lx2 LINE L1 -1 6996 5652 6 1118 1043 150 12 0 chr1 69938622 69938795 -127256637 + L1_Mus4 LINE L1 5291 5465 -418 6 1118 1496 99 0 0 chr1 69938792 69938993 -127256439 - L1_Mus4 LINE L1 -136 6500 6300 6 1118 1468 106 92 0 chr1 69938992 69939219 -127256213 + L1_Mus4 LINE L1 5803 6050 -586 6 1118 295 298 48 0 chr1 69939817 69939901 -127255531 + B1_Mur2 SINE Alu 11 98 -51 6 1118 482 0 17 0 chr1 69939977 69940035 -127255397 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1118 1059 88 0 0 chr1 69940035 69940171 -127255261 - B1_Mm SINE Alu -10 137 2 6 1118 747 278 131 51 chr1 69940329 69941026 -127254406 - L1MA4A LINE L1 -279 6021 5255 6 1118 351 0 0 0 chr1 69941188 69941227 -127254205 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1118 23 54 0 0 chr1 69941644 69941681 -127253751 + AT_rich Low_complexity Low_complexity 1 37 0 6 1118 519 266 16 8 chr1 69942214 69942343 -127253089 + B1_Mur1 SINE Alu 3 132 -17 6 1118 249 125 15 45 chr1 69942371 69942438 -127252994 + CT-rich Low_complexity Low_complexity 1 65 0 6 1118 351 44 0 0 chr1 69942495 69942540 -127252892 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1118 518 229 50 8 chr1 69942588 69942707 -127252725 + B3 SINE B2 87 210 -6 6 1118 546 341 0 73 chr1 69942742 69942919 -127252513 - RSINE1 SINE B4 0 165 2 6 1118 194 214 105 18 chr1 69943241 69943298 -127252134 - MIR3 SINE MIR -27 181 120 6 1118 337 123 45 15 chr1 69943532 69943598 -127251834 + Lx LINE L1 6392 6459 -195 6 1118 670 94 0 33 chr1 69943611 69943732 -127251700 + Lx LINE L1 6537 6653 -1 6 1118 25 51 0 0 chr1 69944281 69944320 -127251112 + AT_rich Low_complexity Low_complexity 1 39 0 6 1118 2154 205 22 2 chr1 69946421 69946826 -127248606 - MTC LTR MaLR -8 413 1 6 1118 219 157 0 0 chr1 69947361 69947412 -127248020 + GA-rich Low_complexity Low_complexity 2 52 0 6 1118 314 399 50 14 chr1 69947511 69947732 -127247700 - LTR33A LTR ERVL -14 506 278 6 1118 217 132 0 0 chr1 69948454 69948492 -127246940 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1118 545 62 37 0 chr1 69948493 69948574 -127246858 - B1_Mm SINE Alu 0 147 64 6 1118 3395 33 5 0 chr1 69948737 69949130 -127246302 + MTA_Mm LTR MaLR 1 395 -1 6 1118 883 308 45 23 chr1 69949709 69949975 -127245457 - B4A SINE B4 -20 272 1 6 1118 23 0 0 0 chr1 69951287 69951310 -127244122 + AT_rich Low_complexity Low_complexity 1 23 0 6 1118 357 43 0 0 chr1 69951412 69951459 -127243973 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 1118 2693 112 55 25 chr1 69951473 69951913 -127243519 - Lx3B LINE L1 -5 6968 6516 6 1118 24 0 0 0 chr1 69951968 69951992 -127243440 + AT_rich Low_complexity Low_complexity 1 24 0 6 1118 214 343 122 7 chr1 69953267 69953449 -127241983 + MIR SINE MIR 1 201 -67 6 1118 438 20 0 0 chr1 69953449 69953500 -127241932 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1118 781 62 9 9 chr1 69953626 69953739 -127241693 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 1118 1731 274 112 30 chr1 69953740 69954773 -127240659 - Lx8 LINE L1 -33 7440 6218 6 1118 354 45 0 0 chr1 69954825 69954869 -127240563 + (ATG)n Simple_repeat Simple_repeat 2 45 0 6 1118 6808 171 11 3 chr1 69954873 69956514 -127238918 - Lx2B LINE L1 -161 6839 5282 6 1118 24 32 0 0 chr1 69956529 69956560 -127238872 + AT_rich Low_complexity Low_complexity 1 31 0 6 1118 35028 60 3 6 chr1 69956579 69962745 -127232687 - L1Md_F3 LINE L1 -14 6570 218 6 1118 1526 145 7 4 chr1 69962831 69963101 -127232331 - Lx2B LINE L1 -586 5291 5021 6 1118 2432 130 19 56 chr1 69963097 69963618 -127231814 - Lx2B LINE L1 -1213 4664 4163 6 1118 390 234 9 9 chr1 69963611 69963719 -127231713 - L1VL4 LINE L1 -5656 646 539 6 1118 296 228 35 47 chr1 69963719 69963889 -127231543 + CT-rich Low_complexity Low_complexity 1 168 0 6 1118 620 67 0 22 chr1 69963858 69963949 -127231483 + (TCCCC)n Simple_repeat Simple_repeat 4 92 0 6 1118 381 43 0 0 chr1 69963968 69964015 -127231417 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 6 1118 377 312 55 9 chr1 69965088 69965198 -127230234 + PB1D10 SINE Alu 3 117 0 6 1118 205 167 42 0 chr1 69965199 69965247 -127230185 + A-rich Low_complexity Low_complexity 4 53 0 6 1118 484 351 124 24 chr1 69965489 69965909 -127229523 - L1M5 LINE L1 -460 5780 5319 6 1118 265 243 0 0 chr1 69965937 69966007 -127229425 - L1MD LINE L1 -489 5870 5801 6 1118 497 294 94 32 chr1 69965996 69966704 -127228728 - L1MC LINE L1 -2559 3587 2827 7 1118 1687 62 44 0 chr1 69966853 69967080 -127228352 - L1_Mus1 LINE L1 -142 6425 6189 7 1118 998 54 0 0 chr1 69967080 69967209 -127228223 + L1_Mus1 LINE L1 6438 6566 -1 7 1118 640 286 173 12 chr1 69967235 69967571 -127227861 - Lx7 LINE L1 -314 7382 6993 7 1118 1556 266 82 13 chr1 69967576 69968098 -127227334 + Lx7 LINE L1 6439 6996 -700 7 1118 388 309 80 7 chr1 69968182 69968319 -127227113 - 7SK RNA RNA -182 149 3 7 1118 1256 91 11 0 chr1 69969116 69969292 -127226140 - B2_Mm1t SINE B2 -6 187 10 7 1118 1701 117 38 0 chr1 69969318 69969583 -127225849 - Lx2 LINE L1 -197 6800 6526 7 1118 231 146 51 20 chr1 69969727 69969825 -127225607 + (TTATA)n Simple_repeat Simple_repeat 5 105 0 7 1118 435 299 99 85 chr1 69970320 69970685 -127224747 + L2a LINE L2 3 372 -3047 7 1118 1808 114 122 32 chr1 69970717 69971061 -127224371 - L1_Mus4 LINE L1 0 6636 6262 7 1118 287 323 78 16 chr1 69971070 69971199 -127224233 + L2a LINE L2 783 919 -2500 7 1118 270 335 106 87 chr1 69971462 69972038 -127223394 + L2a LINE L2 2489 3075 -344 7 1118 219 336 88 66 chr1 69972075 69972301 -127223131 + L2a LINE L2 3184 3414 -12 7 1118 227 257 57 0 chr1 69973717 69973787 -127221645 - Lx8 LINE L1 -1580 5893 5820 7 1118 241 219 10 146 chr1 69973800 69973878 -127221554 + B1F SINE Alu 66 135 -14 7 1118 240 35 0 0 chr1 69973878 69973907 -127221525 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 7 1118 241 219 10 146 chr1 69973907 69973924 -127221508 + B1F SINE Alu 136 148 -1 7 1118 1116 51 0 0 chr1 69973929 69974066 -127221366 + B1_Mm SINE Alu 1 137 -10 7 1118 304 0 20 61 chr1 69974066 69974115 -127221317 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1118 421 306 10 39 chr1 69974926 69975028 -127220404 - RSINE1 SINE B4 -63 102 4 7 1118 30 45 0 0 chr1 69975312 69975356 -127220076 + AT_rich Low_complexity Low_complexity 1 44 0 7 1118 26 0 0 0 chr1 69976090 69976116 -127219316 + AT_rich Low_complexity Low_complexity 1 26 0 7 1118 4438 88 18 2 chr1 69976612 69977236 -127218196 + Lx3_Mus LINE L1 6368 7001 -8 7 1118 236 122 24 0 chr1 69977425 69977466 -127217966 + L1VL4 LINE L1 1 42 -6260 7 1118 5794 81 160 7 chr1 69977467 69978464 -127216968 + MusHAL1 LINE L1 5 1187 -2166 7 1118 5967 116 48 26 chr1 69978464 69978876 -127216556 + RMER17B LTR ERVK 1 399 -559 7 1118 767 90 0 8 chr1 69978876 69978999 -127216433 + (TC)n Simple_repeat Simple_repeat 2 123 0 7 1118 5967 116 48 26 chr1 69978999 69979523 -127215909 + RMER17B LTR ERVK 400 957 -1 7 1118 5794 73 27 12 chr1 69979523 69979906 -127215526 + MusHAL1 LINE L1 1188 1571 -1782 7 1118 830 83 0 0 chr1 69979904 69980024 -127215408 - L1_Mur1 LINE L1 -3267 2619 2500 7 1118 7957 83 20 20 chr1 69980010 69980820 -127214612 + L1_Mur1 LINE L1 3862 4666 -1220 7 1118 1163 68 7 0 chr1 69980820 69980966 -127214466 - B1_Mus2 SINE Alu 0 147 1 7 1118 7957 83 20 20 chr1 69980966 69981382 -127214050 + L1_Mur1 LINE L1 4667 5089 -797 7 1118 201 358 32 0 chr1 69981432 69981527 -127213905 + MIRb SINE MIR 112 209 -59 7 1118 3620 193 76 20 chr1 69981805 69982557 -127212875 - Lx5 LINE L1 -7 7043 6250 7 1118 251 143 20 0 chr1 69982561 69982610 -127212822 + L1_Mur2 LINE L1 5243 5292 -585 7 1118 3002 139 22 54 chr1 69982609 69982977 -127212455 + Lx5 LINE L1 4298 4642 -1244 7 1118 180 0 0 0 chr1 69982977 69982997 -127212435 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1118 3002 139 22 54 chr1 69982997 69983253 -127212179 + Lx5 LINE L1 4643 4902 -984 7 1118 1357 139 29 0 chr1 69983253 69983491 -127211941 + Lx3C LINE L1 6730 6974 -2 7 1118 354 273 0 13 chr1 69983522 69983600 -127211832 + B4A SINE B4 216 292 0 7 1118 842 275 68 32 chr1 69984174 69984482 -127210950 + ORR1D2 LTR MaLR 1 319 -51 7 1118 3403 156 25 15 chr1 69984486 69985449 -127209983 + Lx5 LINE L1 5283 6260 -790 7 1118 21 36 0 0 chr1 69985901 69985929 -127209503 + AT_rich Low_complexity Low_complexity 1 28 0 7 1118 1270 288 83 33 chr1 69986031 69986635 -127208797 + Lx8 LINE L1 6810 7443 -30 7 1118 36944 4 0 0 chr1 69986911 69992274 -127203158 + L1Md_A LINE L1 225 5586 -297 7 139 9023 5 0 0 chr1 69992274 69993270 -127202162 + L1Md_A LINE L1 5587 6582 0 7 1119 240 315 71 18 chr1 69994633 69994746 -127200686 - RMER6D LTR ERVK -397 323 205 7 1119 206 326 29 58 chr1 69996875 69996979 -127198453 - L2c LINE L2 -18 3369 3269 7 1119 1020 61 0 0 chr1 69997564 69997696 -127197736 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 7 1119 301 384 55 0 chr1 69997715 69997861 -127197571 - HAL1-3A_ME LINE L1 -419 2439 2286 7 1119 515 16 16 0 chr1 69997868 69997932 -127197500 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1119 636 199 32 225 chr1 69998765 69999174 -127196258 - Lx7 LINE L1 0 7696 7367 7 1119 28 29 0 0 chr1 69999200 69999235 -127196197 + AT_rich Low_complexity Low_complexity 1 35 0 7 1119 28 0 0 0 chr1 69999261 69999289 -127196143 + AT_rich Low_complexity Low_complexity 1 28 0 7 1119 543 210 49 7 chr1 69999308 69999452 -127195980 - Lx7 LINE L1 -397 7299 7150 7 1119 1228 118 38 0 chr1 69999710 69999896 -127195536 - B2_Mm2 SINE B2 -1 194 2 7 1119 6176 56 2 16 chr1 70000780 70001578 -127193854 - L1Md_F2 LINE L1 -12 6570 5784 1 1119 513 0 0 0 chr1 70004842 70004899 -127190533 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1119 536 314 88 52 chr1 70004921 70005193 -127190239 - B4A SINE B4 -8 284 3 3 1119 21 82 0 0 chr1 70005575 70005624 -127189808 + AT_rich Low_complexity Low_complexity 1 49 0 4 1119 422 251 44 149 chr1 70006650 70006943 -127188489 + L1_Rod LINE L1 1529 1767 -4080 5 1119 1139 68 7 0 chr1 70006943 70007090 -127188342 - B1_Mus1 SINE Alu 0 148 1 6 1119 422 251 44 149 chr1 70007090 70007226 -127188206 + L1_Rod LINE L1 1768 1913 -3934 5 1119 8199 55 2 0 chr1 70007653 70009260 -127186172 - L1Md_F3 LINE L1 -1 6583 4973 7 1119 207 0 0 0 chr1 70009260 70009283 -127186149 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1119 37923 30 0 0 chr1 70009334 70015702 -127179730 - L1Md_T LINE L1 0 6585 121 9 1119 27404 88 13 9 chr1 70015671 70020311 -127175121 - L1Md_F3 LINE L1 -866 5017 360 7 1119 545 280 10 25 chr1 70020383 70020581 -127174851 + L1_Mur3 LINE L1 2691 2885 -2995 1 1119 3081 106 67 0 chr1 70020595 70021057 -127174375 - Lx LINE L1 -8 6646 6154 1 1119 1861 72 0 0 chr1 70021070 70021306 -127174126 + L1_Mus1 LINE L1 6332 6567 0 1 1119 30 69 0 0 chr1 70021617 70021675 -127173757 + AT_rich Low_complexity Low_complexity 1 58 0 1 1119 30 0 0 0 chr1 70021713 70021743 -127173689 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 510 17 0 0 chr1 70022271 70022330 -127173102 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1 1119 811 290 29 37 chr1 70022873 70023145 -127172287 - B4 SINE B4 -21 271 2 1 1119 1760 322 53 14 chr1 70024741 70025510 -127169922 - Lx8 LINE L1 -234 7239 6441 1 1119 21 71 0 0 chr1 70026242 70026284 -127169148 + AT_rich Low_complexity Low_complexity 1 42 0 1 1119 26 0 0 0 chr1 70026512 70026538 -127168894 + AT_rich Low_complexity Low_complexity 1 26 0 1 1119 887 278 86 3 chr1 70027079 70027429 -127168003 + MTE2a LTR MaLR 1 379 0 2 1119 587 308 25 20 chr1 70027451 70027650 -127167782 - B4 SINE B4 -65 227 28 2 1119 1168 47 0 13 chr1 70027957 70028107 -127167325 + B1_Mus1 SINE Alu 1 148 0 2 1119 282 39 38 38 chr1 70028107 70028160 -127167272 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 2 1119 24078 122 34 71 chr1 70028720 70031020 -127164412 + Lx4A LINE L1 663 3046 -2831 2 1119 1109 61 0 37 chr1 70031020 70031207 -127164225 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1119 24078 119 42 93 chr1 70031207 70031271 -127164161 + Lx4A LINE L1 3047 3047 -2830 2 1119 1006 78 0 43 chr1 70031271 70031459 -127163973 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1119 24078 119 42 93 chr1 70031459 70031497 -127163935 + Lx4A LINE L1 3047 3047 -2830 2 1119 1168 67 0 27 chr1 70031497 70031682 -127163750 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1119 24078 119 42 93 chr1 70031682 70031749 -127163683 + Lx4A LINE L1 3047 3059 -2818 2 1119 1205 96 0 6 chr1 70031749 70031928 -127163504 + (GAA)n Simple_repeat Simple_repeat 1 178 0 2 1119 24078 119 42 93 chr1 70031928 70031944 -127163488 + Lx4A LINE L1 3060 3060 -2817 2 1119 891 30 37 7 chr1 70031944 70032080 -127163352 + (GAA)n Simple_repeat Simple_repeat 2 141 0 2 1119 24078 119 42 93 chr1 70032080 70034009 -127161423 + Lx4A LINE L1 3060 4821 -1056 2 1119 1112 88 0 0 chr1 70034009 70034156 -127161276 - B1_Mm SINE Alu 0 147 1 3 1119 24078 123 41 52 chr1 70034156 70036194 -127159238 + Lx4A LINE L1 4822 6918 -140 2 1119 1425 102 34 0 chr1 70036195 70036401 -127159031 - Lx4A LINE L1 -1031 6027 5815 3 1119 474 170 9 9 chr1 70036420 70036527 -127158905 + Lx4A LINE L1 6952 7058 0 2 1119 3884 156 123 75 chr1 70036539 70037400 -127158032 - RMER19B LTR ERVK 0 902 1 3 1119 211 289 78 49 chr1 70037553 70037655 -127157777 - MER5B DNA MER1_type -71 107 3 3 1119 3248 259 98 51 chr1 70038623 70040199 -127155233 + L1_Mur3 LINE L1 2504 4154 -1726 3 1119 1298 236 21 6 chr1 70040219 70040555 -127154877 + L1_Mur3 LINE L1 4453 4793 -1087 3 1119 4109 286 77 15 chr1 70040574 70041996 -127153436 + Lx7 LINE L1 5867 7377 -319 3 1119 243 0 0 0 chr1 70042014 70042041 -127153391 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1119 254 202 139 0 chr1 70042128 70042207 -127153225 + Lx7 LINE L1 7605 7694 -2 3 1119 217 405 0 0 chr1 70042477 70042561 -127152871 + L2a LINE L2 3300 3383 -43 3 1119 365 224 11 39 chr1 70044375 70044556 -127150876 + (TA)n Simple_repeat Simple_repeat 2 177 0 3 1119 222 217 0 0 chr1 70044774 70044843 -127150589 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1119 27 29 0 0 chr1 70044937 70044971 -127150461 + AT_rich Low_complexity Low_complexity 1 34 0 4 1119 3952 211 72 59 chr1 70045235 70046269 -127149163 - Lx7 LINE L1 -1 7695 6649 4 1119 305 303 8 62 chr1 70047058 70047188 -127148244 + B3A SINE B2 1 123 -75 4 1119 207 69 0 0 chr1 70047246 70047275 -127148157 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1119 689 277 91 20 chr1 70047347 70047579 -127147853 + B4A SINE B4 16 250 -42 4 1119 294 106 0 0 chr1 70048026 70048073 -127147359 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1119 21 0 0 0 chr1 70048412 70048433 -127146999 + AT_rich Low_complexity Low_complexity 1 21 0 4 1119 1111 282 29 16 chr1 70048827 70049140 -127146292 - MTE2b LTR MaLR -62 317 1 4 1119 232 0 77 26 chr1 70049178 70049217 -127146215 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1119 429 302 5 57 chr1 70050371 70050564 -127144868 - B3A SINE B2 -15 183 1 4 1119 21 0 0 0 chr1 70050915 70050936 -127144496 + AT_rich Low_complexity Low_complexity 1 21 0 5 1119 267 362 132 41 chr1 70051486 70051543 -127143889 - L2 LINE L2 -557 2862 2804 5 1119 3313 34 2 10 chr1 70051543 70051953 -127143479 + L1Md_F3 LINE L1 6164 6570 -14 5 1119 267 362 132 41 chr1 70051953 70052312 -127143120 - L2 LINE L2 -616 2803 2408 5 1119 348 111 0 0 chr1 70052443 70052497 -127142935 + (A)n Simple_repeat Simple_repeat 1 54 0 5 1119 465 19 0 0 chr1 70053151 70053205 -127142227 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1119 572 325 24 33 chr1 70055463 70055673 -127139759 - B3 SINE B2 -2 214 7 5 1119 4702 205 113 15 chr1 70056892 70058064 -127137368 - Lx4B LINE L1 -73 6985 5700 5 1119 4111 167 12 0 chr1 70058062 70058782 -127136650 + Lx4B LINE L1 4972 5700 -177 5 1119 369 0 0 0 chr1 70059256 70059297 -127136135 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 5 1119 420 329 0 26 chr1 70059977 70060133 -127135299 - MER106A DNA MER1_type -80 156 5 5 1119 958 129 0 0 chr1 70060341 70060481 -127134951 - B1_Mus1 SINE Alu -7 141 2 5 1119 21 0 0 0 chr1 70060759 70060780 -127134652 + AT_rich Low_complexity Low_complexity 1 21 0 6 1119 416 230 23 0 chr1 70061133 70061220 -127134212 + B3 SINE B2 1 89 -127 6 1119 22 35 0 0 chr1 70061369 70061398 -127134034 + AT_rich Low_complexity Low_complexity 1 29 0 6 1119 273 259 0 0 chr1 70062010 70062064 -127133368 + MER2 DNA MER2_type 3 56 -289 6 1119 514 318 72 16 chr1 70062237 70062486 -127132946 + MER2 DNA MER2_type 81 343 -2 6 1119 22 0 0 0 chr1 70062589 70062611 -127132821 + AT_rich Low_complexity Low_complexity 1 22 0 6 1119 22 0 0 0 chr1 70062692 70062714 -127132718 + AT_rich Low_complexity Low_complexity 1 22 0 6 1119 399 255 47 0 chr1 70062768 70062874 -127132558 + RSINE1 SINE B4 21 131 -34 6 1119 25 0 0 0 chr1 70063052 70063077 -127132355 + AT_rich Low_complexity Low_complexity 1 25 0 6 1119 540 81 0 0 chr1 70065565 70065639 -127129793 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 1119 303 28 0 0 chr1 70065639 70065675 -127129757 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1119 797 209 271 6 chr1 70065820 70066129 -127129303 - Lx9 LINE L1 -7 7637 7247 7 1119 1433 59 16 11 chr1 70066333 70066520 -127128912 + B2_Mm2 SINE B2 1 188 -7 7 1119 226 156 0 22 chr1 70066553 70066599 -127128833 + (CAA)n Simple_repeat Simple_repeat 1 45 0 7 1119 676 301 141 0 chr1 70067215 70067471 -127127961 + MTEa LTR MaLR 1 292 -87 7 1119 1160 271 58 76 chr1 70067476 70067607 -127127825 - MTC LTR MaLR -8 413 284 7 1119 4182 73 0 9 chr1 70067607 70068173 -127127259 + L1_Mus3 LINE L1 6076 6636 -2 7 1119 1160 271 58 76 chr1 70068173 70068421 -127127011 - MTC LTR MaLR -138 283 41 7 1119 334 289 11 0 chr1 70068439 70068529 -127126903 + MTEa LTR MaLR 287 377 -2 7 1119 279 0 0 0 chr1 70069132 70069163 -127126269 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1119 21 36 0 0 chr1 70069480 70069508 -127125924 + AT_rich Low_complexity Low_complexity 1 28 0 7 1119 583 318 152 0 chr1 70070256 70070473 -127124959 - ORR1D2 LTR MaLR -97 273 24 7 1119 4523 148 29 1 chr1 70071986 70072918 -127122514 - Lx2 LINE L1 -996 6001 5037 7 1119 1672 170 0 0 chr1 70072920 70073208 -127122224 + Lx2 LINE L1 6710 6997 0 8 1119 651 185 124 11 chr1 70073498 70073554 -127121878 + Lx9 LINE L1 7434 7489 -155 8 1119 645 25 0 0 chr1 70073554 70073633 -127121799 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1119 651 185 124 11 chr1 70073633 70073762 -127121670 + Lx9 LINE L1 7490 7639 -5 8 1119 207 0 0 0 chr1 70074909 70074932 -127120500 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1119 396 301 114 35 chr1 70077708 70078049 -127117383 + L1ME2 LINE L1 5566 5933 -231 8 1119 352 297 134 41 chr1 70078225 70078397 -127117035 + MLT1B LTR MaLR 3 190 -200 8 1119 1133 69 0 0 chr1 70078533 70078678 -127116754 + B1_Mus1 SINE Alu 2 146 -2 8 1119 200 130 22 0 chr1 70078681 70078727 -127116705 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1119 274 253 11 11 chr1 70078761 70078849 -127116583 + L1MEc LINE L1 749 836 -5564 8 1119 21 36 0 0 chr1 70079003 70079031 -127116401 + AT_rich Low_complexity Low_complexity 1 28 0 8 1119 2927 74 36 22 chr1 70079185 70079601 -127115831 - BGLII_Mus LTR ERVK 0 422 1 9 1119 315 179 27 36 chr1 70080799 70080909 -127114523 + CT-rich Low_complexity Low_complexity 1 109 0 9 1119 6956 190 33 6 chr1 70080977 70083072 -127112360 + Lx5 LINE L1 4815 6974 -76 9 1119 441 76 0 0 chr1 70083442 70083508 -127111924 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1119 25 31 0 0 chr1 70083833 70083865 -127111567 + AT_rich Low_complexity Low_complexity 1 32 0 9 1119 498 332 25 5 chr1 70084221 70084418 -127111014 + ID_B1 SINE B4 2 202 -22 9 1119 24 67 0 0 chr1 70084924 70084969 -127110463 + AT_rich Low_complexity Low_complexity 1 45 0 9 1119 233 333 35 12 chr1 70086079 70086252 -127109180 + L1MD LINE L1 3274 3450 -2696 9 1119 263 291 85 50 chr1 70086252 70086393 -127109039 + RSINE1 SINE B4 3 148 -17 9 1119 850 265 62 53 chr1 70086891 70087435 -127107997 - L1MC1 LINE L1 -1989 6006 5453 9 1119 1316 316 37 20 chr1 70087513 70088058 -127107374 - Lx8 LINE L1 -329 7144 6591 1 1119 441 261 30 30 chr1 70088138 70088304 -127107128 - Lx7 LINE L1 -1825 5871 5706 1 1119 678 379 26 17 chr1 70088445 70088910 -127106522 - Lx8 LINE L1 -143 7330 6862 1 1119 602 259 103 37 chr1 70088917 70089175 -127106257 - L1MC1 LINE L1 -856 5290 5014 9 1119 3454 23 2 0 chr1 70089175 70089570 -127105862 - MTA_Mm LTR MaLR 0 396 1 1 1119 602 259 103 37 chr1 70089570 70089584 -127105848 - L1MC1 LINE L1 -1133 5013 5000 9 1119 303 361 0 16 chr1 70089608 70089729 -127105703 - HAL1 LINE L1 -1577 930 812 1 1119 213 65 0 0 chr1 70090143 70090174 -127105258 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1119 22 0 0 0 chr1 70091402 70091424 -127104008 + AT_rich Low_complexity Low_complexity 1 22 0 1 1119 1664 211 37 73 chr1 70091578 70092043 -127103389 - RMER1C Other Other -2 1340 893 1 1119 351 0 0 0 chr1 70092575 70092614 -127102818 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1119 359 343 0 69 chr1 70092678 70092866 -127102566 - L1M2 LINE L1 -992 5151 4977 1 1119 445 252 106 18 chr1 70092966 70093192 -127102240 + L1M2 LINE L1 4711 4956 -1187 1 1119 242 211 105 0 chr1 70093286 70093362 -127102070 - L1M2 LINE L1 -941 5202 5119 1 1119 22 35 0 0 chr1 70093382 70093411 -127102021 + AT_rich Low_complexity Low_complexity 1 29 0 1 1119 6681 34 0 0 chr1 70095202 70095992 -127099440 - L1Md_T LINE L1 0 6582 5793 1 1119 540 157 16 39 chr1 70096327 70096539 -127098893 + GA-rich Low_complexity Low_complexity 1 206 0 1 1119 1353 39 0 16 chr1 70096539 70096722 -127098710 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1119 540 118 11 56 chr1 70096722 70096792 -127098640 + polypurine Low_complexity Low_complexity 110 173 0 1 1119 318 354 101 61 chr1 70097964 70098081 -127097351 - HAL1 LINE L1 -659 1848 1737 1 1119 807 239 40 5 chr1 70098081 70098279 -127097153 + B3 SINE B2 1 205 -11 1 1119 318 354 101 61 chr1 70098279 70098618 -127096814 - HAL1 LINE L1 -771 1736 1375 1 1119 542 296 62 24 chr1 70098756 70099055 -127096377 - MLT1A0 LTR MaLR 0 374 1 1 1119 22 35 0 0 chr1 70099193 70099222 -127096210 + AT_rich Low_complexity Low_complexity 1 29 0 1 1119 390 336 29 19 chr1 70099331 70099562 -127095870 - MLT1B LTR MaLR -11 379 157 1 1119 511 27 0 27 chr1 70100621 70100696 -127094736 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 1 1119 287 152 51 0 chr1 70102667 70102746 -127092686 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1119 1424 108 83 4 chr1 70103176 70103418 -127092014 - L1_Mur2 LINE L1 -1248 4629 4369 1 1119 1606 187 126 64 chr1 70103417 70103886 -127091546 + Lx4B LINE L1 6557 7054 -4 1 1119 213 94 0 0 chr1 70105799 70105831 -127089601 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1119 832 303 59 15 chr1 70105999 70106408 -127089024 - L1MA8 LINE L1 -355 5936 5510 1 1119 639 319 116 18 chr1 70106397 70106898 -127088534 - L1MA8 LINE L1 -929 5214 4665 1 1119 2740 197 32 13 chr1 70107390 70107926 -127087506 - RLTR20B3 LTR ERVK -9 568 23 1 1119 30 0 0 0 chr1 70109013 70109043 -127086389 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 21 36 0 0 chr1 70109730 70109758 -127085674 + AT_rich Low_complexity Low_complexity 1 28 0 1 1119 258 105 0 0 chr1 70109872 70109910 -127085522 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1119 3047 26 7 86 chr1 70111938 70112359 -127083073 + RLTR10 LTR ERVK 1 388 -2 1 1119 387 0 0 0 chr1 70112659 70112702 -127082730 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1119 342 115 0 0 chr1 70112702 70112754 -127082678 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1119 321 135 0 0 chr1 70114284 70114336 -127081096 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1119 1198 38 0 12 chr1 70114670 70114830 -127080602 - L1Md_F2 LINE L1 -2 6580 6423 1 1119 699 334 60 3 chr1 70114947 70115298 -127080134 - Lx8 LINE L1 -324 7149 6779 1 1119 222 57 91 36 chr1 70116151 70116206 -127079226 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 1 1119 236 140 0 39 chr1 70116215 70116267 -127079165 + GA-rich Low_complexity Low_complexity 3 52 0 1 1119 1061 96 6 22 chr1 70116271 70116452 -127078980 + (GAA)n Simple_repeat Simple_repeat 2 179 0 1 1119 217 286 56 28 chr1 70116969 70117041 -127078391 - L2 LINE L2 -1015 2404 2331 1 1119 622 241 133 5 chr1 70117706 70117894 -127077538 + B3 SINE B2 4 215 -1 1 1119 896 297 68 61 chr1 70119016 70119490 -127075942 - MER31A LTR ERV1 0 485 9 1 1119 374 126 0 33 chr1 70119678 70119768 -127075664 + A-rich Low_complexity Low_complexity 1 87 0 1 1119 298 312 17 68 chr1 70121075 70121192 -127074240 - PB1D10 SINE Alu -6 111 1 1 1119 342 269 45 55 chr1 70121576 70121686 -127073746 + B3A SINE B2 2 110 -88 1 1119 694 109 27 0 chr1 70121685 70121795 -127073637 - B1_Mus1 SINE Alu -30 118 6 1 1119 328 208 0 103 chr1 70121703 70121810 -127073622 - MT2B LTR ERVL -350 251 156 1 1119 271 284 27 0 chr1 70121920 70121994 -127073438 - ID4 SINE ID -6 77 2 1 1119 206 255 0 19 chr1 70122084 70122136 -127073296 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1119 665 297 100 4 chr1 70122139 70122369 -127073063 - B4A SINE B4 -2 290 39 1 1119 369 207 146 0 chr1 70122575 70122657 -127072775 - RSINE1 SINE B4 -63 102 9 1 1119 414 0 0 0 chr1 70122659 70122705 -127072727 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1120 459 35 0 0 chr1 70126346 70126403 -127069029 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1120 897 106 43 0 chr1 70126438 70126579 -127068853 + B1_Mus2 SINE Alu 1 147 0 1 1120 694 179 105 46 chr1 70126620 70126772 -127068660 + B3 SINE B2 3 163 -53 1 1120 22 0 0 0 chr1 70127076 70127098 -127068334 + AT_rich Low_complexity Low_complexity 1 22 0 1 1120 25 31 0 0 chr1 70127545 70127577 -127067855 + AT_rich Low_complexity Low_complexity 1 32 0 1 1120 317 24 24 0 chr1 70128106 70128148 -127067284 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1120 356 339 0 42 chr1 70128423 70128543 -127066889 + RSINE1 SINE B4 3 117 -48 1 1120 504 48 0 0 chr1 70128576 70128639 -127066793 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1120 402 57 0 0 chr1 70129621 70129674 -127065758 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1 1120 269 241 58 0 chr1 70129770 70129857 -127065575 + Lx7 LINE L1 7605 7696 0 1 1120 2966 132 31 25 chr1 70130660 70131181 -127064251 - RLTR28 LTR ERVL 0 524 1 1 1120 27 49 0 0 chr1 70132533 70132574 -127062858 + AT_rich Low_complexity Low_complexity 1 41 0 1 1120 521 313 0 0 chr1 70132838 70132985 -127062447 - B1_Mur1 SINE Alu -2 147 1 1 1120 24 32 0 0 chr1 70132995 70133026 -127062406 + AT_rich Low_complexity Low_complexity 1 31 0 1 1120 387 0 0 0 chr1 70134500 70134543 -127060889 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 1 1120 414 126 48 10 chr1 70134544 70134648 -127060784 + GA-rich Low_complexity Low_complexity 3 110 0 1 1120 211 224 0 20 chr1 70134669 70134719 -127060713 - RSINE1 SINE B4 -115 50 2 1 1120 1183 61 0 0 chr1 70135674 70135822 -127059610 - B1_Mus1 SINE Alu 0 148 1 1 1120 420 20 0 0 chr1 70135878 70135927 -127059505 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1120 369 351 79 28 chr1 70135952 70136166 -127059266 - B4A SINE B4 -27 265 41 1 1120 25 0 0 0 chr1 70136526 70136551 -127058881 + AT_rich Low_complexity Low_complexity 1 25 0 1 1120 1391 359 51 30 chr1 70136583 70136659 -127058773 - Lx9 LINE L1 -57 7416 7345 1 1120 4799 68 18 44 chr1 70136659 70137364 -127058068 - L1_Mus2 LINE L1 0 6566 5880 1 1120 1391 359 51 30 chr1 70137364 70137384 -127058048 - Lx9 LINE L1 -129 7344 7327 1 1120 426 20 0 0 chr1 70137384 70137435 -127057997 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1120 2096 321 37 24 chr1 70137435 70138340 -127057092 - Lx9 LINE L1 -207 7437 6395 1 1120 34079 58 12 12 chr1 70138384 70143375 -127052057 + L1Md_F2 LINE L1 528 5585 -298 1 1120 7935 52 2 2 chr1 70143376 70144371 -127051061 + L1Md_F2 LINE L1 5587 6581 -1 1 1120 386 318 95 35 chr1 70144676 70144907 -127050525 + MIR SINE MIR 13 257 -5 1 1120 403 356 143 16 chr1 70145451 70145899 -127049533 - LTR33A_ LTR ERVL -24 507 3 1 1120 2077 186 63 5 chr1 70146103 70146486 -127048946 + MTC LTR MaLR 15 419 -2 1 1120 226 67 44 0 chr1 70147368 70147413 -127048019 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1120 445 131 12 0 chr1 70147445 70147529 -127047903 - Lx LINE L1 -8 6646 6562 1 1120 419 294 34 21 chr1 70148482 70148718 -127046714 + L1M5 LINE L1 5276 5514 -680 1 1120 450 0 0 0 chr1 70150836 70150886 -127044546 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1120 569 314 73 47 chr1 70151082 70151356 -127044076 - RMER15 LTR ERVL -21 554 274 1 1120 360 94 0 0 chr1 70151748 70151801 -127043631 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1120 451 307 127 25 chr1 70152425 70152669 -127042763 - MLT2F LTR ERVL -57 606 338 1 1120 225 155 35 0 chr1 70153029 70153087 -127042345 - L1_Mus3 LINE L1 0 6638 6579 1 1120 353 262 30 15 chr1 70153075 70153207 -127042225 - L1MC LINE L1 -1018 5128 4995 1 1120 638 309 127 7 chr1 70153951 70154251 -127041181 - Lx8 LINE L1 -261 7212 6877 1 1120 24 0 0 0 chr1 70154362 70154386 -127041046 + AT_rich Low_complexity Low_complexity 1 24 0 1 1120 3982 153 42 38 chr1 70156806 70157579 -127037853 + RMER12 LTR ERVK 1 718 -604 1 1120 1104 121 0 0 chr1 70157579 70157744 -127037688 + L1_Mus1 LINE L1 6402 6566 -1 1 1120 3982 138 16 47 chr1 70157744 70157931 -127037501 + RMER12 LTR ERVK 719 885 -437 1 1120 456 35 0 0 chr1 70157934 70157992 -127037440 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1120 185 108 27 0 chr1 70157992 70158028 -127037404 + (CTTG)n Simple_repeat Simple_repeat 3 40 0 1 1120 410 186 144 56 chr1 70158045 70158170 -127037262 + RMER12 LTR ERVK 1185 1320 -2 1 1120 279 346 87 0 chr1 70158519 70158646 -127036786 + B1F SINE Alu 9 146 -3 1 1120 273 350 0 0 chr1 70158650 70158730 -127036702 + B4 SINE B4 2 81 -211 1 1120 26 30 0 0 chr1 70158812 70158845 -127036587 + AT_rich Low_complexity Low_complexity 1 33 0 1 1120 355 194 0 14 chr1 70159525 70159598 -127035834 - MIR SINE MIR -3 259 188 2 1120 1103 41 0 7 chr1 70159886 70160035 -127035397 - L1Md_A LINE L1 0 6582 6435 2 1120 407 318 48 35 chr1 70161555 70161786 -127033646 - Tigger7 DNA MER2_type 0 2491 2258 2 1120 340 331 35 14 chr1 70161794 70161938 -127033494 - Tigger7 DNA MER2_type -1399 1092 946 2 1120 867 335 33 9 chr1 70161947 70162281 -127033151 - Tigger7 DNA MER2_type -2144 347 6 2 1120 954 300 155 19 chr1 70163345 70163881 -127031551 + Lx8 LINE L1 6647 7255 -218 2 1120 360 0 0 0 chr1 70164075 70164115 -127031317 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1120 267 113 16 31 chr1 70164255 70164319 -127031113 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1120 600 327 24 0 chr1 70165138 70165306 -127030126 - B3 SINE B2 -44 172 1 2 1120 387 0 0 0 chr1 70165395 70165438 -127029994 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1120 2857 24 0 0 chr1 70165785 70166115 -127029317 + L1Md_T LINE L1 5257 5586 -297 2 1120 8428 32 0 1 chr1 70166115 70167112 -127028320 + L1Md_T LINE L1 5587 6582 0 2 1120 438 20 0 0 chr1 70167160 70167211 -127028221 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1120 22 0 0 0 chr1 70168677 70168699 -127026733 + AT_rich Low_complexity Low_complexity 1 22 0 2 1120 222 226 0 46 chr1 70169689 70169754 -127025678 + GA-rich Low_complexity Low_complexity 3 64 0 2 1120 246 62 0 0 chr1 70170508 70170540 -127024892 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1120 477 240 182 43 chr1 70171855 70172042 -127023390 + B3 SINE B2 4 216 0 2 1120 534 16 0 0 chr1 70172566 70172629 -127022803 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1120 30 0 0 0 chr1 70173885 70173915 -127021517 + AT_rich Low_complexity Low_complexity 1 30 0 2 1120 793 255 14 9 chr1 70174045 70174255 -127021177 + B3 SINE B2 6 216 0 2 1120 634 274 82 37 chr1 70175580 70175823 -127019609 + Tigger5 DNA MER2_type 3 256 -2150 2 1120 489 285 84 33 chr1 70175825 70176039 -127019393 + Tigger5 DNA MER2_type 2172 2396 -10 2 1120 729 362 70 17 chr1 70176058 70176474 -127018958 - LTR53 LTR ERVL -81 438 1 2 1120 8611 28 0 0 chr1 70176514 70177716 -127017716 - L1Md_A LINE L1 -498 6084 4883 2 1120 3872 56 0 4 chr1 70177719 70178204 -127017228 + L1Md_F2 LINE L1 6099 6581 -1 2 1120 381 350 127 11 chr1 70181380 70181745 -127013687 + MLT1C LTR MaLR 27 433 -34 2 1120 21 36 0 0 chr1 70181878 70181906 -127013526 + AT_rich Low_complexity Low_complexity 1 28 0 2 1120 284 287 62 141 chr1 70181912 70181966 -127013466 - B3 SINE B2 -2 214 173 2 1120 360 0 0 0 chr1 70181966 70182006 -127013426 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1120 385 231 64 119 chr1 70182006 70182178 -127013254 - B3A SINE B2 -44 172 6 2 1120 1656 187 13 0 chr1 70182507 70182817 -127012615 + RLTR40 LTR ERVK 25 338 -479 2 1120 480 255 0 0 chr1 70182814 70182912 -127012520 + RLTR40 LTR ERVK 719 816 -1 2 1120 1548 211 48 3 chr1 70183177 70183533 -127011899 - ORR1D1 LTR MaLR 0 374 3 2 1120 2683 251 44 23 chr1 70183655 70184343 -127011089 - Lx5 LINE L1 0 7050 6349 2 1120 3085 161 31 116 chr1 70184339 70184975 -127010457 - L1_Mur2 LINE L1 -305 5572 4985 2 1120 712 130 153 8 chr1 70184975 70185099 -127010333 - B1_Mus1 SINE Alu -6 142 1 2 1120 3353 199 24 180 chr1 70185099 70185195 -127010237 - L1_Mur2 LINE L1 -889 4997 4948 2 1120 380 295 42 28 chr1 70185195 70185338 -127010094 - RLTR8 LTR ERVK 0 365 221 2 1120 3353 199 24 180 chr1 70185338 70185698 -127009734 - L1_Mur2 LINE L1 -889 4947 4761 2 1120 3766 49 0 11 chr1 70185698 70186172 -127009260 - L1_Mus1 LINE L1 -1 6566 6098 2 1120 3353 180 20 10 chr1 70186172 70186305 -127009127 - L1_Mur2 LINE L1 -1117 4760 4627 2 1120 198 71 0 0 chr1 70186305 70186333 -127009099 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1120 3353 180 20 10 chr1 70186333 70186777 -127008655 - L1_Mur2 LINE L1 -1251 4626 4174 2 1120 6210 182 57 84 chr1 70186767 70187587 -127007845 - L1_Mur2 LINE L1 -2977 2900 2049 2 1120 198 71 0 0 chr1 70187587 70187615 -127007817 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1120 6210 205 66 80 chr1 70187615 70189226 -127006206 - L1_Mur2 LINE L1 -3829 2048 512 2 1120 389 289 49 30 chr1 70189336 70189500 -127005932 - RMER15-int LTR ERVL -3691 1308 1142 2 1120 228 270 72 112 chr1 70190222 70190347 -127005085 + LTR16B1 LTR ERVL 205 324 -156 2 1120 1056 210 41 60 chr1 70191266 70191631 -127003801 + Lx9 LINE L1 7280 7637 -7 2 1120 3436 49 0 2 chr1 70192906 70193332 -127002100 + L1Md_F3 LINE L1 5162 5586 -297 2 1120 8149 34 5 1 chr1 70193333 70194312 -127001120 + L1Md_F3 LINE L1 5588 6570 -14 2 1120 327 78 0 0 chr1 70194322 70194373 -127001059 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1120 312 317 152 39 chr1 70194397 70194627 -127000805 - MLT1F LTR MaLR -3 545 290 2 1120 657 285 16 26 chr1 70195132 70195153 -127000279 - B3 SINE B2 -25 191 173 2 1120 237 98 0 0 chr1 70195153 70195194 -127000238 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1120 778 240 18 0 chr1 70195194 70195363 -127000069 - B3A SINE B2 -44 172 3 2 1120 2295 252 14 18 chr1 70196009 70196403 -126999029 - Lx5 LINE L1 -13 7037 6642 2 1120 294 53 35 17 chr1 70196403 70196461 -126998971 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1120 2295 252 14 18 chr1 70196461 70196628 -126998804 - Lx5 LINE L1 -409 6641 6478 2 1120 2310 189 48 9 chr1 70196619 70197079 -126998353 - Lx5 LINE L1 -984 6066 5589 2 1120 4997 152 15 5 chr1 70197079 70197931 -126997501 + L1_Mur2 LINE L1 4356 5216 -661 2 1120 507 310 39 53 chr1 70197943 70198151 -126997281 - RMER12 LTR ERVK -13 1309 1105 2 1120 3812 176 34 38 chr1 70198270 70199097 -126996335 - RLTR22_Mur LTR ERVK -990 858 35 2 1120 428 186 10 0 chr1 70199098 70199195 -126996237 + L1_Mur2 LINE L1 5211 5308 -569 2 1120 4076 209 75 1 chr1 70199196 70200075 -126995357 - Lx2B LINE L1 -4 6996 6053 2 1120 1325 173 51 4 chr1 70200079 70200334 -126995098 + L1_Mur2 LINE L1 5320 5586 -291 2 1120 650 232 92 6 chr1 70200637 70200810 -126994622 - ORR1D1 LTR MaLR 0 374 187 2 1120 294 240 50 0 chr1 70200814 70200914 -126994518 - Lx5 LINE L1 0 7050 6946 2 1120 343 250 65 24 chr1 70201805 70201928 -126993504 - MIR SINE MIR -28 234 107 2 1120 691 296 48 22 chr1 70203426 70203654 -126991778 - Lx7 LINE L1 -336 7360 7127 2 1120 310 306 62 18 chr1 70205107 70205220 -126990212 + MIRb SINE MIR 117 234 -34 2 1120 978 245 138 17 chr1 70205975 70206477 -126988955 + L1MA4A LINE L1 5351 5906 -397 2 1120 214 133 89 0 chr1 70206595 70206685 -126988747 + GA-rich Low_complexity Low_complexity 3 100 0 2 1120 324 0 0 0 chr1 70206719 70206755 -126988677 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1120 473 68 27 0 chr1 70206755 70206828 -126988604 + (TATG)n Simple_repeat Simple_repeat 2 76 0 2 1120 267 114 0 0 chr1 70206866 70206910 -126988522 + (TTAGGG)n Simple_repeat Simple_repeat 4 47 0 2 1120 214 204 39 10 chr1 70206916 70207020 -126988412 + (TA)n Simple_repeat Simple_repeat 1 107 0 2 1120 327 280 11 11 chr1 70207141 70207235 -126988197 + RSINE1 SINE B4 3 96 -69 2 1120 379 247 11 11 chr1 70207315 70207405 -126988027 + PB1D10 SINE Alu 2 91 -26 2 1120 7475 63 9 9 chr1 70207424 70208435 -126986997 - L1_Mus2 LINE L1 -9 6557 5547 2 1120 498 144 162 0 chr1 70208429 70208539 -126986893 + L1_Mm LINE L1 5435 5589 -297 2 1120 1745 158 271 77 chr1 70208539 70209219 -126986213 + RMER6C LTR ERVK 1 716 -4 2 1120 287 331 35 14 chr1 70209442 70209583 -126985849 - LTR80B LTR ERVL -261 323 180 2 1120 279 175 0 0 chr1 70209618 70209675 -126985757 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1120 1099 217 225 11 chr1 70209766 70210144 -126985288 + RMER15 LTR ERVL 28 486 -89 2 1120 457 281 61 0 chr1 70210209 70210323 -126985109 - RSINE1 SINE B4 -42 123 3 2 1120 1139 79 6 17 chr1 70210548 70210728 -126984704 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2 1120 336 140 43 26 chr1 70210732 70210849 -126984583 + GA-rich Low_complexity Low_complexity 2 120 0 2 1120 346 361 70 17 chr1 70211971 70212143 -126983289 + LTR16C LTR ERVL 100 280 -209 2 1120 486 204 7 22 chr1 70213163 70213298 -126982134 + G-rich Low_complexity Low_complexity 2 134 0 2 1120 748 249 51 36 chr1 70213599 70213875 -126981557 - MTD LTR MaLR -14 407 107 2 1120 531 0 0 0 chr1 70214087 70214146 -126981286 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1120 261 0 0 0 chr1 70214437 70214466 -126980966 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1120 560 225 0 33 chr1 70214487 70214671 -126980761 + G-rich Low_complexity Low_complexity 1 178 0 2 1120 330 342 46 26 chr1 70214697 70214850 -126980582 + HAL1-3A_ME LINE L1 2284 2439 -419 2 1120 309 307 37 28 chr1 70215565 70215690 -126979742 - B1_Mur1 SINE Alu -22 127 2 2 1120 415 299 45 68 chr1 70215780 70215956 -126979476 - B3A SINE B2 0 198 27 2 1120 400 141 64 0 chr1 70215955 70216033 -126979399 - B2_Mm2 SINE B2 -19 176 94 2 1120 233 146 0 0 chr1 70216035 70216076 -126979356 - B3A SINE B2 -152 46 6 2 1120 279 0 0 0 chr1 70216411 70216442 -126978990 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1120 469 189 90 15 chr1 70216445 70216579 -126978853 - L1MCb LINE L1 -4887 1158 1015 2 1120 626 280 21 11 chr1 70216576 70216764 -126978668 - Lx8 LINE L1 -1020 6453 6264 2 1120 468 300 83 48 chr1 70217993 70218161 -126977271 - MER2 DNA MER2_type 0 345 172 2 1120 724 309 36 32 chr1 70219100 70219339 -126976093 + ID_B1 SINE B4 7 245 -47 2 1120 291 114 0 0 chr1 70219354 70219398 -126976034 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2 1120 441 0 0 0 chr1 70219436 70219485 -126975947 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 1120 324 0 0 0 chr1 70219501 70219537 -126975895 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1120 5514 161 84 33 chr1 70219593 70220646 -126974786 - RLTR13D3 LTR ERVK 0 1114 9 2 1120 748 194 14 0 chr1 70222009 70222148 -126973284 - B1_Mur4 SINE Alu -1 149 9 2 1120 359 239 16 99 chr1 70222043 70222164 -126973268 - MT2B LTR ERVL -337 264 154 2 1120 243 202 0 67 chr1 70222806 70222896 -126972536 + A-rich Low_complexity Low_complexity 2 85 0 2 1120 348 24 0 0 chr1 70224211 70224252 -126971180 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1120 207 0 0 0 chr1 70225293 70225316 -126970116 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1120 969 330 58 33 chr1 70226181 70226704 -126968728 + MER54A LTR ERVL 294 901 0 2 1120 644 148 133 4 chr1 70229885 70230051 -126965381 + MT-int LTR MaLR 866 1171 -87 2 1120 307 392 62 7 chr1 70230535 70230591 -126964841 + B4 SINE B4 27 90 -202 2 1120 485 247 10 0 chr1 70230591 70230688 -126964744 + B1_Mur2 SINE Alu 2 99 -50 2 1120 656 155 14 14 chr1 70230856 70231000 -126964432 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 1120 558 258 138 88 chr1 70231004 70231481 -126963951 + L1M4 LINE L1 4287 4787 -1359 3 1120 749 305 170 29 chr1 70231497 70232115 -126963317 + L1M4c LINE L1 64 768 -5616 3 1120 1397 25 0 0 chr1 70232146 70232305 -126963127 + L1Md_F2 LINE L1 5428 5586 -297 3 1120 8062 44 11 0 chr1 70232305 70233283 -126962149 + L1Md_F2 LINE L1 5587 6575 -7 3 1120 469 150 50 6 chr1 70233635 70233796 -126961636 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 3 1120 780 134 35 0 chr1 70233846 70234017 -126961415 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 3 1120 232 248 19 29 chr1 70234094 70234198 -126961234 + L1M4c LINE L1 1305 1407 -4977 3 1120 6664 192 51 13 chr1 70234456 70236264 -126959168 + Lx6 LINE L1 4397 6273 -1187 3 1120 1110 304 70 56 chr1 70236325 70236727 -126958705 + Lx6 LINE L1 6484 6891 -159 3 1120 623 105 26 26 chr1 70236727 70236802 -126958630 - Lx2B LINE L1 -1 6999 6925 3 1120 279 0 0 0 chr1 70236802 70236833 -126958599 + (CATCC)n Simple_repeat Simple_repeat 4 34 0 3 1120 623 105 26 26 chr1 70236833 70236874 -126958558 - Lx2B LINE L1 -76 6924 6883 3 1120 1110 304 70 56 chr1 70236874 70236956 -126958476 + Lx6 LINE L1 6892 6975 -75 3 1120 1013 239 28 63 chr1 70236962 70237338 -126958094 + RLTR11A LTR ERVK 188 528 0 3 1120 267 190 0 0 chr1 70238014 70238072 -126957360 + CT-rich Low_complexity Low_complexity 4 61 0 3 1120 230 322 34 82 chr1 70238221 70238515 -126956917 - Lx8 LINE L1 -5 7468 7189 3 1120 184 227 0 22 chr1 70238923 70238968 -126956464 + MIRb SINE MIR 224 267 -1 3 1120 183 80 0 0 chr1 70239085 70239110 -126956322 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1120 452 134 24 0 chr1 70239110 70239192 -126956240 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 3 1120 300 283 43 86 chr1 70241005 70241121 -126954311 - PB1 SINE Alu -2 125 15 3 1120 314 350 53 14 chr1 70241191 70241349 -126954083 - L1MD3 LINE L1 -952 7043 6878 3 1120 975 14 0 193 chr1 70241349 70241525 -126953907 - B1_Mus1 SINE Alu -6 142 1 3 1120 314 350 53 14 chr1 70241525 70241575 -126953857 - L1MD3 LINE L1 -1118 6877 6828 3 1120 659 337 63 0 chr1 70242011 70242201 -126953231 - B3 SINE B2 -14 202 1 3 1120 27 29 0 0 chr1 70243230 70243264 -126952168 + AT_rich Low_complexity Low_complexity 1 34 0 3 1120 236 53 26 0 chr1 70243946 70243984 -126951448 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1120 2424 305 85 49 chr1 70244717 70245989 -126949443 - Lx9 LINE L1 -5 7639 6322 3 1120 279 161 0 0 chr1 70246121 70246177 -126949255 + (TGG)n Simple_repeat Simple_repeat 1 56 0 3 1120 189 195 0 0 chr1 70246187 70246228 -126949204 + (CATA)n Simple_repeat Simple_repeat 2 42 0 3 1120 1931 274 49 10 chr1 70246229 70246823 -126948609 - Lx9 LINE L1 -128 7516 6900 3 1120 313 222 69 69 chr1 70247078 70247194 -126948238 - PB1D7 SINE Alu -1 119 4 3 1120 326 242 69 37 chr1 70248094 70248394 -126947038 - L1MEc LINE L1 -2433 5735 5439 3 1120 384 22 0 0 chr1 70248414 70248459 -126946973 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1120 195 146 0 0 chr1 70248459 70248500 -126946932 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1120 389 287 97 5 chr1 70248546 70248742 -126946690 - L1MEc LINE L1 -975 5344 5131 3 1120 404 242 164 26 chr1 70248746 70248941 -126946491 - L1MEc LINE L1 -1295 5024 4803 3 1120 333 263 155 16 chr1 70248984 70249177 -126946255 - L1MEc LINE L1 -1628 4691 4472 3 1120 197 224 0 17 chr1 70249212 70249271 -126946161 + GA-rich Low_complexity Low_complexity 4 61 0 3 1120 783 178 11 6 chr1 70249266 70249441 -126945991 + G-rich Low_complexity Low_complexity 4 179 0 3 1120 298 133 80 0 chr1 70249442 70249517 -126945915 + GA-rich Low_complexity Low_complexity 1 81 0 3 1120 304 271 157 8 chr1 70249518 70249652 -126945780 + HAL1-3A_ME LINE L1 2285 2438 -420 3 1120 1060 111 10 5 chr1 70249654 70249863 -126945569 + (GGAGA)n Simple_repeat Simple_repeat 1 210 0 3 1120 629 340 97 12 chr1 70249883 70250142 -126945290 + B4 SINE B4 7 287 -5 3 1120 302 296 75 29 chr1 70250640 70250880 -126944552 - L1MEc LINE L1 -5601 799 549 3 1120 1179 117 0 0 chr1 70251753 70251933 -126943499 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1120 951 172 0 0 chr1 70251945 70252051 -126943381 + (TA)n Simple_repeat Simple_repeat 1 106 0 3 1120 1338 73 0 0 chr1 70252051 70252230 -126943202 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 1120 951 153 17 6 chr1 70252230 70252395 -126943037 + (TA)n Simple_repeat Simple_repeat 1 166 0 3 1120 80 11 0 0 chr1 70252593 70252680 -126942752 + AT_rich Low_complexity Low_complexity 1 87 0 3 1120 2419 11 0 11 chr1 70253566 70253846 -126941586 + L1Md_A LINE L1 6306 6582 0 3 1120 527 114 23 0 chr1 70254094 70254182 -126941250 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 3 1121 207 169 45 57 chr1 70255102 70255190 -126940242 + (AATAG)n Simple_repeat Simple_repeat 1 87 0 3 1121 35438 34 0 0 chr1 70255288 70260694 -126934738 + L1Md_T LINE L1 86 5589 -297 3 1121 8923 8 0 0 chr1 70260694 70261690 -126933742 + L1Md_T LINE L1 5590 6585 0 3 1121 195 42 0 0 chr1 70261713 70261737 -126933695 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1121 318 167 9 29 chr1 70262277 70262382 -126933050 + (CAT)n Simple_repeat Simple_repeat 2 104 0 3 1121 262 300 0 0 chr1 70262382 70262442 -126932990 - ID2 SINE ID -2 81 22 3 1121 227 289 0 0 chr1 70262485 70262537 -126932895 + ID4 SINE ID 2 53 -30 3 1121 396 125 0 0 chr1 70263813 70263877 -126931555 + (T)n Simple_repeat Simple_repeat 1 64 0 3 1121 211 269 0 19 chr1 70264566 70264619 -126930813 - L2c LINE L2 -229 3158 3107 3 1121 227 0 0 0 chr1 70264757 70264786 -126930646 + RLTR31A_Mm LTR ERVK 272 300 -284 3 1121 5047 70 1 7 chr1 70264786 70265461 -126929971 - L1Md_F2 LINE L1 -14 6568 5898 3 1121 196 250 0 82 chr1 70265798 70265859 -126929573 - MIR SINE MIR -25 237 182 3 1121 207 0 0 0 chr1 70266046 70266069 -126929363 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1121 1021 160 11 16 chr1 70266705 70266751 -126928681 - B2_Mm2 SINE B2 -2 193 148 3 1121 935 9 9 0 chr1 70266751 70266863 -126928569 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 3 1121 1021 160 11 16 chr1 70266863 70267007 -126928425 - B2_Mm2 SINE B2 -48 147 4 3 1121 1910 154 51 74 chr1 70267505 70267898 -126927534 + ORR1C2 LTR MaLR 1 384 0 3 1121 230 263 188 10 chr1 70270256 70270352 -126925080 + L1M4 LINE L1 5042 5154 -992 3 1121 2132 170 24 16 chr1 70271050 70271421 -126924011 - MTC LTR MaLR -35 386 13 3 1121 532 349 105 20 chr1 70271954 70272232 -126923200 - MLT2C2 LTR ERVL -73 391 83 3 1121 340 37 18 18 chr1 70272232 70272287 -126923145 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1121 532 349 105 20 chr1 70272287 70272359 -126923073 - MLT2C2 LTR ERVL -382 82 11 3 1121 21 57 0 0 chr1 70273441 70273476 -126921956 + AT_rich Low_complexity Low_complexity 1 35 0 3 1121 399 127 0 0 chr1 70273560 70273623 -126921809 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1121 216 0 0 0 chr1 70273623 70273647 -126921785 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1121 22 35 0 0 chr1 70273675 70273704 -126921728 + AT_rich Low_complexity Low_complexity 1 29 0 3 1121 24 0 0 0 chr1 70273855 70273879 -126921553 + AT_rich Low_complexity Low_complexity 1 24 0 3 1121 1001 205 188 31 chr1 70273951 70274303 -126921129 + L1_Rod LINE L1 2034 2440 -3407 3 1121 411 304 40 13 chr1 70274435 70274585 -126920847 + MLT1A1 LTR MaLR 1 154 -236 3 1121 23 0 0 0 chr1 70274729 70274752 -126920680 + AT_rich Low_complexity Low_complexity 1 23 0 3 1121 3153 43 35 0 chr1 70274753 70275148 -126920284 - L1_Mus1 LINE L1 0 6567 6159 3 1121 423 231 131 8 chr1 70278395 70278517 -126916915 + MLT1A1 LTR MaLR 270 406 -2 3 1121 270 125 0 0 chr1 70279395 70279443 -126915989 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1121 333 0 0 0 chr1 70279909 70279946 -126915486 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 3 1121 1204 242 99 41 chr1 70280295 70280640 -126914792 - ORR1D1 LTR MaLR -3 371 7 3 1121 231 412 0 10 chr1 70280879 70280977 -126914455 - B4 SINE B4 -106 186 90 3 1121 284 221 16 26 chr1 70280915 70280984 -126914448 - B1F2 SINE Alu -82 66 3 3 1121 4420 18 0 0 chr1 70281098 70281591 -126913841 + MT2_Mm LTR ERVL 1 493 0 3 1121 466 347 37 22 chr1 70281599 70281870 -126913562 + B4A SINE B4 4 278 -14 3 1121 2941 21 0 3 chr1 70283655 70283993 -126911439 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1121 23467 35 30 12 chr1 70283993 70287006 -126908426 + IAPEz-int LTR ERVK 8 3076 -3405 3 1121 6979 27 2 6 chr1 70286992 70287847 -126907585 + IAPEz-int LTR ERVK 5630 6481 0 3 1121 2929 24 0 3 chr1 70287847 70288185 -126907247 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1121 25 31 0 0 chr1 70288763 70288795 -126906637 + AT_rich Low_complexity Low_complexity 1 32 0 3 1121 379 235 5 32 chr1 70289130 70289315 -126906117 + (CCA)n Simple_repeat Simple_repeat 1 180 0 3 1121 441 36 0 0 chr1 70289932 70289987 -126905445 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1121 5255 95 0 4 chr1 70289995 70290716 -126904716 - L1_Mus4 LINE L1 -7 6629 5912 3 1121 21 71 0 0 chr1 70291868 70291910 -126903522 + AT_rich Low_complexity Low_complexity 1 42 0 3 1121 351 157 0 150 chr1 70291917 70292037 -126903395 - Lx3C LINE L1 -37 6939 6838 3 1121 1174 101 0 22 chr1 70292038 70292220 -126903212 + Lx3B LINE L1 6371 6548 -425 3 1121 207 0 0 0 chr1 70292671 70292694 -126902738 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1121 1959 224 39 21 chr1 70293048 70293618 -126901814 + Lx9 LINE L1 6935 7514 -130 3 1121 319 171 156 22 chr1 70293617 70293707 -126901725 + Lx9 LINE L1 6928 7029 -615 3 1121 248 170 19 0 chr1 70293707 70293760 -126901672 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1121 191 116 47 0 chr1 70293766 70293809 -126901623 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 3 1121 458 61 15 0 chr1 70293820 70293886 -126901546 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1121 233 271 34 0 chr1 70294131 70294190 -126901242 + MER34 LTR ERV1 2 62 -480 3 1121 2960 198 166 35 chr1 70295618 70296351 -126899081 - RMER19B LTR ERVK -19 883 55 3 1121 748 207 61 3 chr1 70296350 70296511 -126898921 - RMER19B LTR ERVK -439 172 1 3 1121 453 278 41 92 chr1 70297273 70297506 -126897926 + ORR1D2 LTR MaLR 8 190 -169 3 1121 333 47 0 0 chr1 70297506 70297549 -126897883 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1121 453 248 111 58 chr1 70297549 70297709 -126897723 + ORR1D2 LTR MaLR 183 404 -17 3 1121 550 293 16 0 chr1 70297825 70297948 -126897484 + B1F SINE Alu 18 142 -7 3 1121 378 115 12 37 chr1 70297948 70298029 -126897403 + GA-rich Low_complexity Low_complexity 1 79 0 3 1121 216 0 0 0 chr1 70298412 70298436 -126896996 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1121 1014 299 63 12 chr1 70298603 70298938 -126896494 + ORR1E LTR MaLR 8 359 0 3 1121 961 287 85 37 chr1 70299460 70299836 -126895596 + MMAR1 DNA Mariner 352 745 -541 3 1121 559 152 22 55 chr1 70299843 70300024 -126895408 + GA-rich Low_complexity Low_complexity 4 178 0 3 1121 1732 243 102 10 chr1 70300042 70300540 -126894892 + MMAR1 DNA Mariner 737 1280 -6 3 1121 662 134 0 8 chr1 70301139 70301267 -126894165 + (TC)n Simple_repeat Simple_repeat 1 127 0 4 1121 295 288 180 23 chr1 70301520 70301776 -126893656 + Lx8 LINE L1 6822 7117 -356 4 1121 909 8 17 8 chr1 70301777 70301896 -126893536 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 1121 261 0 0 0 chr1 70301904 70301933 -126893499 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1121 199 140 20 20 chr1 70302034 70302085 -126893347 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1121 25 0 0 0 chr1 70302133 70302158 -126893274 + AT_rich Low_complexity Low_complexity 1 25 0 4 1121 284 252 85 23 chr1 70302325 70302455 -126892977 - L1_Rod LINE L1 -1992 3855 3718 4 1121 263 254 61 15 chr1 70302510 70302642 -126892790 - L1_Mur1 LINE L1 -2269 3617 3480 4 1121 619 249 36 73 chr1 70302780 70303231 -126892201 - L1_Rod LINE L1 -2810 3037 2500 4 1121 199 303 89 20 chr1 70303492 70303593 -126891839 + L2 LINE L2 2730 2837 -582 4 1121 306 273 0 22 chr1 70303602 70303692 -126891740 - MLT1A1 LTR MaLR -8 400 313 4 1121 432 0 0 0 chr1 70304542 70304590 -126890842 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1121 450 0 0 0 chr1 70304630 70304680 -126890752 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1121 246 136 0 0 chr1 70305849 70305893 -126889539 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1121 447 68 0 0 chr1 70305898 70305957 -126889475 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1121 462 230 39 103 chr1 70306013 70306168 -126889264 - B1_Mur1 SINE Alu -2 147 3 4 1121 376 319 50 36 chr1 70306544 70306765 -126888667 + MER58A DNA MER1_type 1 224 0 4 1121 403 318 38 12 chr1 70307169 70307334 -126888098 + MIR SINE MIR 57 239 -29 4 1121 812 149 0 29 chr1 70308121 70308294 -126887138 + GA-rich Low_complexity Low_complexity 4 171 0 4 1121 353 236 117 7 chr1 70308300 70308445 -126886987 - HAL1-2a_MD LINE L1 -550 2474 2314 4 1121 1255 326 56 86 chr1 70308753 70309401 -126886031 + Tigger7 DNA MER2_type 10 637 -1854 4 1121 529 234 91 51 chr1 70309410 70309586 -126885846 + Tigger7 DNA MER2_type 2308 2490 -1 4 1121 324 48 0 0 chr1 70311110 70311152 -126884280 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1121 184 340 0 0 chr1 70311226 70311276 -126884156 - MIR3 SINE MIR -44 164 115 4 1121 387 0 0 0 chr1 70313264 70313307 -126882125 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1121 1145 58 0 0 chr1 70313379 70313517 -126881915 + B1_Mus2 SINE Alu 2 139 -8 4 1121 180 0 0 0 chr1 70313523 70313543 -126881889 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1121 1685 314 115 11 chr1 70313972 70314931 -126880501 - Lx8 LINE L1 -73 7400 6343 4 1121 596 261 126 7 chr1 70314985 70315128 -126880304 + B3A SINE B2 1 160 -38 4 1121 28 0 0 0 chr1 70315517 70315545 -126879887 + AT_rich Low_complexity Low_complexity 1 28 0 4 1121 1129 82 0 0 chr1 70315639 70315785 -126879647 - B1_Mus1 SINE Alu -2 146 1 4 1121 230 191 62 16 chr1 70316608 70316658 -126878774 - B4 SINE B4 -200 92 42 4 1121 315 0 0 0 chr1 70316658 70316693 -126878739 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1121 230 191 62 16 chr1 70316693 70316706 -126878726 - B4 SINE B4 -251 41 27 4 1121 232 321 103 35 chr1 70319491 70319607 -126875825 + MLT1J2 LTR MaLR 44 167 -281 4 1121 4118 241 43 34 chr1 70320190 70320270 -126875162 - Lx6 LINE L1 -485 6975 6896 4 1121 306 107 0 0 chr1 70320270 70320326 -126875106 + (TCTG)n Simple_repeat Simple_repeat 2 57 0 4 1121 4118 241 43 34 chr1 70320326 70321470 -126873962 - Lx6 LINE L1 -565 6895 5741 4 1121 614 221 88 14 chr1 70321552 70321699 -126873733 + RSINE1 SINE B4 8 165 0 4 1121 386 319 16 48 chr1 70321941 70322066 -126873366 + ID_B1 SINE B4 76 196 -28 4 1121 1912 177 38 12 chr1 70322600 70323000 -126872432 + L1_Mur3 LINE L1 5318 5727 -153 4 1121 1495 247 43 9 chr1 70323346 70323693 -126871739 - ORR1D1 LTR MaLR -15 359 1 4 1121 259 333 13 13 chr1 70324115 70324194 -126871238 + ID4_ SINE ID 1 79 -4 4 1121 858 164 0 0 chr1 70324203 70324487 -126870945 + GA-rich Low_complexity Low_complexity 1 284 0 4 1121 801 298 76 33 chr1 70325925 70326227 -126869205 - ORR1E LTR MaLR -42 317 3 4 1121 193 148 0 47 chr1 70329278 70329342 -126866090 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 4 1121 247 306 8 24 chr1 70331129 70331253 -126864179 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 1121 212 350 7 14 chr1 70331468 70331610 -126863822 + (CA)n Simple_repeat Simple_repeat 2 142 0 4 1121 1873 240 56 81 chr1 70332769 70333373 -126862059 - RMER1B Other Other -4 1062 474 4 1121 857 277 80 25 chr1 70333558 70333716 -126861716 - L1MD3 LINE L1 -21 7974 7803 4 1121 309 26 0 0 chr1 70333716 70333754 -126861678 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 4 1121 857 277 80 25 chr1 70333754 70334032 -126861400 - L1MD3 LINE L1 -193 7802 7514 4 1121 221 191 21 0 chr1 70335662 70335709 -126859723 + CT-rich Low_complexity Low_complexity 1 48 0 4 1121 183 42 0 0 chr1 70335738 70335762 -126859670 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1121 1073 297 25 8 chr1 70335851 70336211 -126859221 - Lx7 LINE L1 -391 7305 6940 4 1121 356 309 40 40 chr1 70336963 70337138 -126858294 - MER5A DNA MER1_type 0 189 15 4 1121 27 29 0 0 chr1 70337714 70337748 -126857684 + AT_rich Low_complexity Low_complexity 1 34 0 4 1121 412 229 210 105 chr1 70339399 70339628 -126855804 + B4 SINE B4 40 292 0 4 1121 237 222 0 0 chr1 70339628 70339691 -126855741 + (CATA)n Simple_repeat Simple_repeat 1 63 0 4 1121 343 0 21 21 chr1 70340282 70340330 -126855102 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 1121 351 0 0 0 chr1 70340765 70340804 -126854628 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1121 284 152 0 0 chr1 70342296 70342353 -126853079 - Lx7 LINE L1 -230 7466 7424 4 1121 300 53 0 0 chr1 70342379 70342417 -126853015 + (TTATA)n Simple_repeat Simple_repeat 5 42 0 4 1121 495 0 0 0 chr1 70342992 70343047 -126852385 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1121 842 245 6 0 chr1 70344142 70344301 -126851131 + B3 SINE B2 2 161 -55 4 1121 24 53 0 0 chr1 70344469 70344507 -126850925 + AT_rich Low_complexity Low_complexity 1 38 0 4 1121 233 172 35 0 chr1 70344696 70344754 -126850678 + GA-rich Low_complexity Low_complexity 3 62 0 4 1121 290 296 3 9 chr1 70345257 70345368 -126850064 - Lx9 LINE L1 -599 7045 6829 4 1121 243 88 0 0 chr1 70346068 70346102 -126849330 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1121 22 0 0 0 chr1 70346804 70346826 -126848606 + AT_rich Low_complexity Low_complexity 1 22 0 4 1121 305 59 0 68 chr1 70347713 70347786 -126847646 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 4 1121 378 94 0 0 chr1 70347823 70347887 -126847545 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1121 3263 46 2 2 chr1 70348196 70348592 -126846840 + MTA_Mm LTR MaLR 1 396 0 4 1121 300 200 0 0 chr1 70349692 70349767 -126845665 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1121 275 336 32 8 chr1 70350238 70350361 -126845071 + MLT1J-int LTR MaLR 134 259 -1128 4 1121 362 300 151 27 chr1 70350534 70350719 -126844713 + MLT1J-int LTR MaLR 616 823 -564 4 1121 997 159 22 17 chr1 70350800 70350979 -126844453 + Lx3B LINE L1 6784 6963 -10 4 1121 216 0 0 0 chr1 70350979 70351003 -126844429 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 4 1121 317 373 56 0 chr1 70351573 70351699 -126843733 - B3A SINE B2 -65 133 1 4 1121 1467 189 98 20 chr1 70351779 70352135 -126843297 + ORR1C2 LTR MaLR 1 384 0 4 1121 348 24 0 0 chr1 70352231 70352272 -126843160 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1121 383 271 19 0 chr1 70352663 70352770 -126842662 + ID_B1 SINE B4 87 195 -29 4 1121 694 292 66 79 chr1 70352814 70353119 -126842313 + RMER13A LTR ERVK 30 330 -530 4 1121 306 0 0 0 chr1 70353144 70353178 -126842254 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1121 297 385 57 19 chr1 70353375 70353587 -126841845 - L2 LINE L2 -541 2878 2659 4 1121 22 0 0 0 chr1 70355075 70355097 -126840335 + AT_rich Low_complexity Low_complexity 1 22 0 4 1121 26 82 0 0 chr1 70355285 70355346 -126840086 + AT_rich Low_complexity Low_complexity 1 61 0 4 1121 22 35 0 0 chr1 70356636 70356665 -126838767 + AT_rich Low_complexity Low_complexity 1 29 0 4 1121 461 336 0 0 chr1 70356877 70357002 -126838430 - B4A SINE B4 -2 290 166 4 1121 258 32 0 0 chr1 70357026 70357057 -126838375 + (CCCCCT)n Simple_repeat Simple_repeat 3 33 0 4 1121 22 35 0 0 chr1 70357170 70357199 -126838233 + AT_rich Low_complexity Low_complexity 1 29 0 4 1121 304 339 186 23 chr1 70357765 70358028 -126837404 + L2 LINE L2 192 497 -2922 4 1121 414 39 0 0 chr1 70358164 70358216 -126837216 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1121 202 354 62 57 chr1 70358361 70358553 -126836879 + L2 LINE L2 560 752 -2667 4 1121 1026 223 160 34 chr1 70358716 70359041 -126836391 + ORR1D2 LTR MaLR 3 368 -2 4 1121 239 322 63 37 chr1 70359229 70359419 -126836013 + L2 LINE L2 1405 1599 -1820 4 1121 525 313 172 48 chr1 70359699 70360013 -126835419 + MLT1A0 LTR MaLR 1 353 -37 4 1121 511 332 35 92 chr1 70360357 70360995 -126834437 - L1MD2 LINE L1 -102 6257 5657 4 1121 415 371 57 11 chr1 70361017 70361279 -126834153 - L1MD2 LINE L1 -807 5552 5279 4 1121 1190 79 79 0 chr1 70361585 70361763 -126833669 - B2_Mm2 SINE B2 -3 192 1 4 1121 279 290 0 20 chr1 70364677 70364779 -126830653 + B1_Mur2 SINE Alu 36 135 -14 4 1121 356 276 18 54 chr1 70365000 70365111 -126830321 + PB1D10 SINE Alu 3 109 -8 4 1121 337 344 106 36 chr1 70366702 70367502 -126827930 - L1M4b LINE L1 -5483 1851 996 4 1121 1482 140 262 30 chr1 70367503 70367835 -126827597 - RLTR9E LTR ERVK 0 409 1 4 1121 1121 297 76 55 chr1 70368027 70368794 -126826638 + L1MB2 LINE L1 5204 5993 -178 4 1121 7312 57 23 25 chr1 70370586 70371979 -126823453 - L1Md_F2 LINE L1 -12 6570 5191 4 1121 691 301 118 61 chr1 70372760 70373530 -126821902 - L1MA6 LINE L1 -24 6276 5463 4 1121 264 77 58 0 chr1 70373610 70373662 -126821770 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1121 305 123 18 0 chr1 70373774 70373831 -126821601 - L1MA6 LINE L1 -846 5445 5388 4 1121 762 158 6 64 chr1 70373836 70373992 -126821440 - B1_Mus1 SINE Alu -1 147 1 4 1121 21 0 0 0 chr1 70374040 70374061 -126821371 + AT_rich Low_complexity Low_complexity 1 21 0 4 1121 215 234 62 15 chr1 70374225 70374290 -126821142 + MIR SINE MIR 89 156 -106 5 1121 236 202 136 25 chr1 70374377 70374458 -126820974 + MLT1A1 LTR MaLR 318 407 -1 5 1121 477 220 0 0 chr1 70375661 70375770 -126819662 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1121 1146 89 0 0 chr1 70375987 70376133 -126819299 + B1_Mus1 SINE Alu 1 146 -2 5 1121 286 269 0 0 chr1 70376137 70376215 -126819217 + L1M3 LINE L1 5603 5680 -503 5 1121 387 289 84 7 chr1 70376275 70376473 -126818959 - L1M4 LINE L1 -605 5566 5346 5 1121 904 172 7 0 chr1 70376521 70376666 -126818766 + B1_Mus1 SINE Alu 2 147 -1 5 1121 360 0 0 0 chr1 70376700 70376740 -126818692 + (CATA)n Simple_repeat Simple_repeat 4 43 0 5 1121 2758 50 0 6 chr1 70376740 70377127 -126818305 + L1Md_F3 LINE L1 6223 6584 0 5 1121 1423 140 9 0 chr1 70377129 70377351 -126818081 + L1_Mur2 LINE L1 5557 5780 -97 5 1121 8707 125 40 15 chr1 70377376 70378893 -126816539 - Lx2B LINE L1 -15 6985 5414 5 1121 1848 128 11 80 chr1 70378890 70379255 -126816177 + L1_Mur1 LINE L1 2846 3185 -2701 5 1121 8063 147 25 11 chr1 70379234 70381123 -126814309 - Lx2B LINE L1 -1132 2782 961 5 1121 2014 178 99 14 chr1 70381111 70381527 -126813905 + Lx5 LINE L1 6573 7023 -27 5 1121 378 0 0 0 chr1 70381533 70381575 -126813857 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 1121 365 297 15 23 chr1 70381575 70381706 -126813726 - MLT2B2 LTR ERVL -19 548 419 5 1121 405 316 164 17 chr1 70381713 70381951 -126813481 - MLT2B2 LTR ERVL -242 273 1 5 1121 347 307 66 13 chr1 70382121 70382273 -126813159 - L1MB4 LINE L1 -6143 464 305 5 1121 309 312 0 8 chr1 70382358 70382484 -126812948 - L1MB4 LINE L1 -6417 190 66 5 1121 1008 265 69 38 chr1 70383447 70383765 -126811667 + MER2 DNA MER2_type 10 337 -8 5 1121 23 78 0 0 chr1 70383851 70383902 -126811530 + AT_rich Low_complexity Low_complexity 1 51 0 5 1121 236 430 16 0 chr1 70384688 70384809 -126810623 - MIR SINE MIR -109 153 31 5 1121 282 344 123 76 chr1 70385353 70385630 -126809802 + B4 SINE B4 3 292 0 5 1122 234 0 0 0 chr1 70385721 70385747 -126809685 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1122 1971 138 36 0 chr1 70386556 70386889 -126808543 - Lx LINE L1 -4 6650 6306 5 1122 5608 137 11 1 chr1 70386906 70387825 -126807607 - L1_Mur2 LINE L1 -615 5262 4335 5 1122 749 211 11 6 chr1 70387825 70388006 -126807426 - Lx7 LINE L1 -16 7680 7499 5 1122 368 372 95 18 chr1 70388158 70388380 -126807052 - MLT1F1 LTR MaLR -8 561 323 5 1122 629 322 52 18 chr1 70389173 70389526 -126805906 - MLT1A LTR MaLR -1 373 3 5 1122 288 0 0 0 chr1 70390249 70390281 -126805151 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1122 314 221 39 45 chr1 70390299 70390455 -126804977 + (TATG)n Simple_repeat Simple_repeat 4 158 0 5 1122 239 93 23 0 chr1 70390484 70390527 -126804905 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1122 272 195 60 26 chr1 70390528 70390644 -126804788 + (TATATG)n Simple_repeat Simple_repeat 3 122 0 5 1122 316 182 23 0 chr1 70390676 70390764 -126804668 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1122 21 57 0 0 chr1 70391088 70391123 -126804309 + AT_rich Low_complexity Low_complexity 1 35 0 5 1122 789 45 0 0 chr1 70391124 70391234 -126804198 - L1Md_A LINE L1 0 6582 6473 5 1122 6171 81 0 5 chr1 70391457 70392284 -126803148 + L1Md_F2 LINE L1 5758 6580 -2 5 1122 242 139 0 0 chr1 70393594 70393630 -126801802 + Lx4B LINE L1 6563 6598 -460 5 1122 510 150 9 48 chr1 70393630 70393735 -126801697 + B1_Mur3 SINE Alu 40 140 -9 5 1122 377 80 0 0 chr1 70393754 70393804 -126801628 - ORR1A4 LTR MaLR -6 323 274 5 1122 1774 98 8 4 chr1 70393806 70394062 -126801370 - L1_Mus1 LINE L1 0 6567 6311 5 1122 912 77 0 0 chr1 70394062 70394179 -126801253 + L1_Mus1 LINE L1 6090 6206 -361 5 1122 1355 199 21 28 chr1 70394179 70394469 -126800963 - ORR1A4 LTR MaLR -41 288 1 5 1122 1821 245 49 16 chr1 70394479 70394911 -126800521 + Lx5 LINE L1 6600 7045 -5 5 1122 26 30 0 0 chr1 70395171 70395204 -126800228 + AT_rich Low_complexity Low_complexity 1 33 0 5 1122 557 294 12 18 chr1 70395217 70395383 -126800049 - RSINE1 SINE B4 0 165 1 5 1122 809 310 24 29 chr1 70398247 70398623 -126796809 + L1M5 LINE L1 2557 2930 -3216 5 1122 386 336 0 17 chr1 70398804 70398919 -126796513 + B4 SINE B4 75 187 -105 5 1122 305 324 59 21 chr1 70399037 70399223 -126796209 + L1MD LINE L1 4368 4560 -1586 5 1122 1127 69 0 0 chr1 70399226 70399370 -126796062 + B1_Mm SINE Alu 2 145 -2 5 1122 257 265 0 0 chr1 70399383 70399451 -126795981 + L1MD LINE L1 4551 4618 -1528 5 1122 470 310 63 15 chr1 70399658 70399864 -126795568 + B3 SINE B2 1 216 0 5 1122 331 278 125 16 chr1 70399876 70400004 -126795428 + B1_Mur3 SINE Alu 1 142 -7 5 1122 2854 88 5 15 chr1 70401154 70401556 -126793876 - L1_Mus3 LINE L1 -12 6626 6229 5 1122 1276 33 0 0 chr1 70401557 70401709 -126793723 + L1_Mus3 LINE L1 6051 6202 -436 5 1122 579 233 8 0 chr1 70401870 70401990 -126793442 - RSINE1 SINE B4 -42 123 3 5 1122 201 163 0 0 chr1 70402971 70403020 -126792412 + T-rich Low_complexity Low_complexity 1 49 0 5 1122 1209 227 44 7 chr1 70403146 70403439 -126791993 + ORR1C1 LTR MaLR 1 304 -74 5 1122 344 59 0 19 chr1 70403439 70403491 -126791941 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 5 1122 1118 42 0 0 chr1 70403494 70403637 -126791795 - B1_Mus1 SINE Alu 0 148 6 5 1122 290 23 0 83 chr1 70403694 70403742 -126791690 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1122 342 308 184 7 chr1 70403766 70403900 -126791532 + B3 SINE B2 38 198 -18 5 1122 279 0 0 0 chr1 70403900 70403931 -126791501 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 1122 342 308 184 7 chr1 70403931 70403943 -126791489 + B3 SINE B2 199 210 -6 5 1122 555 300 130 11 chr1 70403980 70404050 -126791382 + MER20B DNA MER1_type 294 374 -409 5 1122 312 27 0 0 chr1 70404050 70404087 -126791345 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 1122 555 300 130 11 chr1 70404087 70404292 -126791140 + MER20B DNA MER1_type 375 601 -182 5 1122 25 31 0 0 chr1 70404321 70404353 -126791079 + AT_rich Low_complexity Low_complexity 1 32 0 5 1122 249 128 0 0 chr1 70406056 70406103 -126789329 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1122 210 246 0 34 chr1 70406901 70406960 -126788472 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 5 1122 1011 187 34 129 chr1 70406975 70407331 -126788101 + RLTRETN_Mm LTR ERVK 1 322 0 5 1122 508 242 111 61 chr1 70407418 70407616 -126787816 + MTD LTR MaLR 6 213 -206 5 1122 304 217 17 0 chr1 70407631 70407691 -126787741 + MTD LTR MaLR 335 395 -24 5 1122 1058 324 103 29 chr1 70407864 70408376 -126787056 - Lx9 LINE L1 -510 7134 6585 5 1122 395 285 6 69 chr1 70408377 70408557 -126786875 + L1_Rod LINE L1 4302 4508 -1635 5 1122 512 169 212 0 chr1 70408775 70408832 -126786600 - RLTR20C LTR ERVK -25 553 481 5 1122 576 84 0 0 chr1 70408832 70408915 -126786517 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1122 1149 197 89 53 chr1 70408915 70409274 -126786158 - RLTR20C LTR ERVK -98 480 1 5 1122 21 0 0 0 chr1 70409828 70409849 -126785583 + AT_rich Low_complexity Low_complexity 1 21 0 5 1122 684 242 0 0 chr1 70409911 70410039 -126785393 - RSINE1 SINE B4 -36 129 2 5 1122 23 78 0 0 chr1 70410240 70410291 -126785141 + AT_rich Low_complexity Low_complexity 1 51 0 5 1122 1058 98 0 3 chr1 70410320 70410617 -126784815 + (TG)n Simple_repeat Simple_repeat 1 295 0 5 1122 302 360 110 0 chr1 70410624 70410724 -126784708 - B3A SINE B2 -41 157 47 5 1122 695 263 23 105 chr1 70410786 70411164 -126784268 + RLTR46 LTR ERVK 1 357 0 5 1122 189 0 0 0 chr1 70411684 70411705 -126783727 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1122 1079 82 7 7 chr1 70411773 70411921 -126783511 + B1_Mus1 SINE Alu 1 148 0 5 1122 212 54 0 51 chr1 70411921 70411960 -126783472 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 5 1122 522 317 139 63 chr1 70412046 70412504 -126782928 - MLT2B2 LTR ERVL -3 551 6 5 1122 1094 295 130 39 chr1 70413090 70413584 -126781848 + MER82 DNA MER2_type 50 588 -65 5 1122 497 293 132 6 chr1 70413590 70413772 -126781660 - MER67B LTR ERV1 0 543 339 5 1122 1050 88 0 0 chr1 70413837 70413984 -126781448 + (TATATG)n Simple_repeat Simple_repeat 4 150 0 5 1122 234 272 228 0 chr1 70413988 70414150 -126781282 - L1MA6 LINE L1 -49 6251 6053 5 1122 707 278 110 32 chr1 70414168 70414450 -126780982 - MER67B LTR ERV1 -309 352 49 5 1122 244 163 39 39 chr1 70414513 70414564 -126780868 - MER67B LTR ERV1 -489 54 4 5 1122 248 313 24 24 chr1 70414866 70414951 -126780481 - MER2B DNA MER2_type -49 287 203 5 1122 950 189 5 21 chr1 70414988 70415177 -126780255 + URR1B DNA MER1_type 40 225 0 5 1122 420 294 41 115 chr1 70415177 70415446 -126779986 + MTEa LTR MaLR 45 293 -86 5 1122 5396 40 0 0 chr1 70416024 70416676 -126778756 + L1Md_T LINE L1 5931 6582 0 5 1122 217 304 81 20 chr1 70418446 70418594 -126776838 + RSINE1 SINE B4 7 163 -2 5 1122 989 264 50 7 chr1 70419343 70419625 -126775807 - Lx8 LINE L1 -8 7465 7172 5 1122 335 257 251 12 chr1 70419661 70419820 -126775612 + Lx8 LINE L1 6742 6938 -535 5 1122 453 324 114 30 chr1 70419996 70420591 -126774841 - L1MEf LINE L1 -4524 1676 1032 5 1122 338 57 19 0 chr1 70421992 70422045 -126773387 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1122 575 219 97 0 chr1 70422593 70422748 -126772684 - Lx9 LINE L1 -163 7481 7312 5 1122 367 326 23 23 chr1 70422856 70422988 -126772444 + RSINE1 SINE B4 2 133 -32 5 1122 405 0 0 0 chr1 70422991 70423036 -126772396 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1122 391 264 97 35 chr1 70423046 70423191 -126772241 - RLTR21 LTR ERVK 0 1572 1419 5 1122 2934 210 71 83 chr1 70423309 70424430 -126771002 - RMER12 LTR ERVK 0 1572 88 5 1122 3023 49 20 8 chr1 70424430 70424821 -126770611 - MTA_Mm LTR MaLR 0 396 1 5 1122 2558 234 77 47 chr1 70424821 70424896 -126770536 - RMER12 LTR ERVK -1317 87 15 5 1122 358 215 0 15 chr1 70424907 70425039 -126770393 + (CA)n Simple_repeat Simple_repeat 2 131 0 5 1122 309 303 0 0 chr1 70425781 70425857 -126769575 + ID4_ SINE ID 3 78 -5 5 1122 643 240 25 76 chr1 70426761 70426959 -126768473 - MER5A DNA MER1_type 0 189 2 5 1122 235 199 162 26 chr1 70427574 70427659 -126767773 - B1F SINE Alu -10 110 14 5 1122 245 51 26 0 chr1 70428135 70428174 -126767258 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1122 257 75 25 0 chr1 70428183 70428223 -126767209 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1122 539 233 10 10 chr1 70428225 70428709 -126766723 + (TG)n Simple_repeat Simple_repeat 1 484 0 6 1122 236 309 86 80 chr1 70428709 70428871 -126766561 - RSINE1 SINE B4 0 165 3 6 1122 21 36 0 0 chr1 70429217 70429245 -126766187 + AT_rich Low_complexity Low_complexity 1 28 0 6 1122 1569 37 0 16 chr1 70429248 70429440 -126765992 + B2_Mm1a SINE B2 3 191 -2 6 1122 3382 27 5 5 chr1 70429455 70429861 -126765571 + L1Md_F2 LINE L1 6177 6582 0 6 1122 863 228 191 4 chr1 70431193 70431444 -126763988 - L1_Mur3 LINE L1 -7176 536 239 6 1122 243 0 0 0 chr1 70432014 70432041 -126763391 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1122 351 0 0 0 chr1 70432041 70432079 -126763353 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1122 565 307 105 68 chr1 70432172 70432686 -126762746 - Charlie7 DNA MER1_type -649 1963 1431 6 1122 319 196 33 0 chr1 70432998 70433090 -126762342 - Lx6 LINE L1 -4 7456 7362 6 1122 5875 41 1 6 chr1 70433086 70433840 -126761592 - L1Md_F3 LINE L1 0 6584 5846 6 1122 246 304 25 12 chr1 70433903 70433983 -126761449 + Charlie7 DNA MER1_type 1515 1595 -1017 6 1122 215 394 19 0 chr1 70434169 70434273 -126761159 + MIRb SINE MIR 43 148 -120 6 1122 2441 177 34 0 chr1 70434331 70434777 -126760655 - L1_Mur2 LINE L1 0 5877 5417 6 1122 1159 56 0 0 chr1 70435387 70435530 -126759902 + B1_Mus2 SINE Alu 2 144 -3 6 1122 576 42 0 0 chr1 70435530 70435601 -126759831 + (TAA)n Simple_repeat Simple_repeat 2 72 0 6 1122 23 68 0 0 chr1 70435781 70435825 -126759607 + AT_rich Low_complexity Low_complexity 1 44 0 6 1122 1264 116 5 5 chr1 70436248 70436438 -126758994 + B2_Mm2 SINE B2 1 190 -5 6 1122 214 297 70 35 chr1 70436644 70436759 -126758673 + MIRb SINE MIR 43 161 -107 6 1122 459 0 0 0 chr1 70436779 70436830 -126758602 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 1122 28 29 0 0 chr1 70437507 70437542 -126757890 + AT_rich Low_complexity Low_complexity 1 35 0 6 1122 201 147 0 0 chr1 70437667 70437701 -126757731 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1122 21 0 0 0 chr1 70439207 70439228 -126756204 + AT_rich Low_complexity Low_complexity 1 21 0 6 1122 23 33 0 0 chr1 70439264 70439294 -126756138 + AT_rich Low_complexity Low_complexity 1 30 0 6 1122 309 51 0 0 chr1 70439808 70439847 -126755585 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1122 235 264 216 11 chr1 70440003 70440091 -126755341 - LTR16E1 LTR ERVL -210 328 223 6 1122 313 200 71 48 chr1 70440442 70440526 -126754906 - L1M2 LINE L1 -529 5771 5686 6 1122 374 132 0 13 chr1 70440526 70440603 -126754829 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1122 830 274 126 55 chr1 70440686 70440986 -126754446 + L1MA10 LINE L1 5818 6140 -194 6 1122 240 35 0 0 chr1 70440986 70441015 -126754417 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1122 830 274 126 55 chr1 70441015 70441189 -126754243 + L1MA10 LINE L1 6141 6325 -9 6 1122 201 39 0 0 chr1 70441465 70441491 -126753941 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1122 267 342 49 16 chr1 70441496 70441618 -126753814 + L2a LINE L2 3007 3132 -294 6 1122 2996 243 25 40 chr1 70441865 70442710 -126752722 + Lx9 LINE L1 6811 7642 -2 6 1122 335 314 67 11 chr1 70443271 70443529 -126751903 - L1MC4a LINE L1 -1426 6616 6343 6 1122 412 279 60 47 chr1 70444473 70444706 -126750726 - L1MC4 LINE L1 -3846 2369 2134 6 1122 326 23 23 0 chr1 70445019 70445062 -126750370 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1122 180 0 0 0 chr1 70445062 70445081 -126750351 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1122 251 213 13 0 chr1 70445082 70445157 -126750275 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 1122 1473 170 95 9 chr1 70445159 70445474 -126749958 - Lx9 LINE L1 -127 7517 7176 6 1122 1049 164 16 21 chr1 70445504 70445697 -126749735 - B2_Mm2 SINE B2 -3 192 1 6 1122 2464 236 75 28 chr1 70445959 70446596 -126748836 - Lx6 LINE L1 -14 7446 6780 6 1122 1533 160 34 53 chr1 70447009 70447344 -126748088 + ORR1B1 LTR MaLR 1 332 -62 6 1122 546 209 0 0 chr1 70447345 70447450 -126747982 + Lx2 LINE L1 6615 6719 -278 6 1122 2634 78 8 47 chr1 70447450 70447851 -126747581 + L1_Mus3 LINE L1 6254 6638 0 6 1122 1394 133 60 19 chr1 70447846 70448115 -126747317 + Lx LINE L1 6374 6653 -1 6 1122 364 109 18 0 chr1 70448119 70448174 -126747258 + ORR1A4 LTR MaLR 274 329 0 6 1122 481 351 135 53 chr1 70448884 70449410 -126746022 - LTR80A LTR ERVL -12 571 3 6 1122 252 238 0 0 chr1 70450107 70450170 -126745262 + (CATA)n Simple_repeat Simple_repeat 2 64 0 6 1122 388 154 0 0 chr1 70450325 70450390 -126745042 - RMER1C Other Other -8 1334 1270 6 1122 1085 233 0 0 chr1 70450544 70450750 -126744682 + B3 SINE B2 1 206 -10 6 1122 21 0 0 0 chr1 70450957 70450978 -126744454 + AT_rich Low_complexity Low_complexity 1 21 0 6 1122 285 182 0 0 chr1 70450978 70451033 -126744399 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 6 1122 229 298 0 0 chr1 70452165 70452222 -126743210 - ID_B1 SINE B4 -63 161 105 6 1122 1369 262 167 93 chr1 70452350 70452439 -126742993 - RMER1A Other Other -28 1002 913 6 1122 707 93 8 0 chr1 70452439 70452557 -126742875 + (CA)n Simple_repeat Simple_repeat 2 120 0 6 1122 1369 271 123 87 chr1 70452557 70453739 -126741693 - RMER1A Other Other -118 912 7 6 1122 568 182 0 35 chr1 70454166 70454280 -126741152 - B1_Mus1 SINE Alu 0 148 39 6 1122 402 21 0 0 chr1 70454295 70454342 -126741090 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1122 342 0 0 0 chr1 70456289 70456327 -126739105 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1122 210 143 0 0 chr1 70458426 70458461 -126736971 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1122 1449 276 104 35 chr1 70458730 70459364 -126736068 - Lx9 LINE L1 0 7644 6967 6 1122 781 259 99 9 chr1 70459375 70459597 -126735835 - Lx9 LINE L1 -757 6887 6646 6 1122 1225 140 5 0 chr1 70460264 70460464 -126734968 - Lx2 LINE L1 0 6997 6797 6 1122 234 75 36 36 chr1 70460937 70460992 -126734440 + (TTTTTA)n Simple_repeat Simple_repeat 3 57 0 6 1122 1197 55 0 0 chr1 70460993 70461139 -126734293 - B1_Mus1 SINE Alu -2 146 1 6 1122 903 161 194 0 chr1 70461496 70461676 -126733756 + B3 SINE B2 2 216 0 6 1122 1029 144 1 2 chr1 70461782 70461974 -126733458 + L1_Mm LINE L1 5018 5214 -669 6 1122 188 81 0 75 chr1 70463427 70463467 -126731965 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1122 843 197 0 0 chr1 70463475 70463622 -126731810 - B1_Mus2 SINE Alu 0 147 1 6 1122 1047 31 0 0 chr1 70463681 70463808 -126731624 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 6 1122 23 101 0 0 chr1 70464962 70465041 -126730391 + AT_rich Low_complexity Low_complexity 1 79 0 6 1122 204 40 0 0 chr1 70465570 70465595 -126729837 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 1122 459 0 0 0 chr1 70466247 70466298 -126729134 + (CAT)n Simple_repeat Simple_repeat 1 51 0 6 1122 507 33 0 0 chr1 70468392 70468453 -126726979 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 6 1122 277 302 0 0 chr1 70468601 70468664 -126726768 - B4 SINE B4 -2 290 228 6 1122 383 68 0 17 chr1 70469166 70469226 -126726206 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1122 7691 73 0 0 chr1 70470358 70471521 -126723911 + L1_Mus1 LINE L1 5398 6560 -7 6 1122 274 152 0 57 chr1 70471698 70471768 -126723664 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 6 1122 733 216 43 0 chr1 70471938 70472077 -126723355 + B1_Mur3 SINE Alu 4 148 -1 6 1122 284 346 26 0 chr1 70472133 70472211 -126723221 - B3 SINE B2 -133 83 4 6 1122 236 239 30 0 chr1 70473882 70473949 -126721483 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 6 1122 1012 169 102 14 chr1 70475770 70476053 -126719379 + Lx9 LINE L1 7335 7642 -2 6 1122 252 323 43 78 chr1 70476306 70476523 -126718909 + MLT1C LTR MaLR 1 208 -259 6 1122 314 313 145 35 chr1 70476555 70476727 -126718705 + MLT1C LTR MaLR 277 467 0 6 1122 1043 64 64 0 chr1 70477658 70477799 -126717633 + B1_Mur4 SINE Alu 1 150 0 6 1122 396 0 0 0 chr1 70478652 70478696 -126716736 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 6 1122 472 222 0 22 chr1 70479532 70479624 -126715808 + B3 SINE B2 38 127 -89 6 1122 723 264 154 22 chr1 70481170 70481551 -126713881 - L1MA6 LINE L1 -46 6254 5817 6 1122 195 204 0 0 chr1 70482113 70482157 -126713275 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1122 312 27 0 0 chr1 70483057 70483094 -126712338 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1122 249 33 0 0 chr1 70483784 70483814 -126711618 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1122 23 54 0 0 chr1 70483920 70483957 -126711475 + AT_rich Low_complexity Low_complexity 1 37 0 6 1122 22 56 0 0 chr1 70484452 70484488 -126710944 + AT_rich Low_complexity Low_complexity 1 36 0 6 1122 400 185 12 36 chr1 70484821 70484905 -126710527 + MTD LTR MaLR 113 194 -227 6 1122 229 26 26 26 chr1 70484905 70484944 -126710488 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1122 1106 155 150 0 chr1 70484946 70485153 -126710279 - Lx4A LINE L1 -379 6679 6442 6 1122 2118 160 27 13 chr1 70485153 70485526 -126709906 + Lx4A LINE L1 6679 7056 -2 6 1122 30 0 0 0 chr1 70485526 70485556 -126709876 + AT_rich Low_complexity Low_complexity 1 30 0 6 1122 717 271 44 92 chr1 70485556 70485784 -126709648 + MTD LTR MaLR 200 416 -3 6 1122 242 310 0 0 chr1 70486106 70486164 -126709268 + tRNA-Ala-GCA tRNA tRNA 5 62 -13 6 1122 318 50 0 0 chr1 70486224 70486264 -126709168 + (TTG)n Simple_repeat Simple_repeat 3 42 0 6 1122 482 347 0 23 chr1 70486298 70486469 -126708963 + MER63A DNA AcHobo 1 167 -43 6 1122 777 315 118 26 chr1 70486765 70487156 -126708276 + MLT1F-int LTR MaLR 1052 1478 -11 6 1122 228 324 81 0 chr1 70487676 70487787 -126707645 + Lx8 LINE L1 7041 7160 -313 7 1122 411 281 40 68 chr1 70487971 70488147 -126707285 + RMER15 LTR ERVL 343 513 -62 7 1122 25 31 0 0 chr1 70488582 70488614 -126706818 + AT_rich Low_complexity Low_complexity 1 32 0 7 1122 192 125 0 0 chr1 70488686 70488718 -126706714 + (CTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1122 892 174 168 0 chr1 70489923 70490113 -126705319 - URR1A DNA MER1_type 0 226 5 7 1122 243 350 102 0 chr1 70490669 70490806 -126704626 - MIRb SINE MIR 0 268 118 7 1122 880 78 8 0 chr1 70490898 70491027 -126704405 - L1_Mus2 LINE L1 -2 6564 6435 7 1122 1232 167 9 36 chr1 70491309 70491532 -126703900 - URR1B DNA MER1_type 0 225 9 7 1122 543 347 31 18 chr1 70491550 70491773 -126703659 + MLT1B LTR MaLR 93 318 -72 7 1122 579 29 0 0 chr1 70492464 70492533 -126702899 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7 1122 240 143 0 0 chr1 70492831 70492873 -126702559 + (TTA)n Simple_repeat Simple_repeat 1 42 0 7 1122 7184 141 31 17 chr1 70492873 70494089 -126701343 - Lx4A LINE L1 -9 7049 5817 7 1122 575 299 15 50 chr1 70494293 70494494 -126700938 + B3A SINE B2 3 196 -2 7 1122 439 294 96 0 chr1 70494591 70494768 -126700664 + B3A SINE B2 1 194 -4 7 1122 629 206 29 14 chr1 70494774 70494912 -126700520 + B1_Mm SINE Alu 1 140 -7 7 1122 267 79 0 0 chr1 70494918 70494956 -126700476 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 7 1122 9421 147 64 18 chr1 70494957 70496724 -126698708 - RLTR22_Mur LTR ERVK 0 1848 1 7 1122 445 286 61 47 chr1 70496955 70497168 -126698264 - ID_B1 SINE B4 -8 216 1 7 1122 2206 148 45 48 chr1 70497450 70497770 -126697662 + MTC LTR MaLR 1 328 -93 7 1122 3408 23 5 0 chr1 70497770 70498164 -126697268 + MTA_Mm LTR MaLR 1 396 0 7 1122 8976 33 14 1 chr1 70498164 70498848 -126696584 + MTA_Mm-int LTR MaLR 1 685 -413 7 1122 180 0 0 0 chr1 70498848 70498868 -126696564 + (CAG)n Simple_repeat Simple_repeat 2 21 0 7 1122 8976 33 14 1 chr1 70498868 70499267 -126696165 + MTA_Mm-int LTR MaLR 686 1096 -2 7 1122 3389 25 5 0 chr1 70499267 70499661 -126695771 + MTA_Mm LTR MaLR 1 396 0 7 1122 2206 148 45 48 chr1 70499661 70499758 -126695674 + MTC LTR MaLR 329 417 -4 7 1122 477 0 0 0 chr1 70500216 70500269 -126695163 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1122 281 387 70 0 chr1 70500614 70500756 -126694676 - MLT1J2 LTR MaLR -43 405 254 2 1122 228 86 0 0 chr1 70501246 70501281 -126694151 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1122 7817 35 2 2 chr1 70501284 70502225 -126693207 - L1Md_F2 LINE L1 -5 6577 5637 4 1122 1033 75 0 0 chr1 70502296 70502430 -126693002 + MTB LTR MaLR 1 134 -266 5 1122 303 136 0 0 chr1 70502435 70502479 -126692953 + L1VL1 LINE L1 54 97 -6325 6 1122 844 76 15 22 chr1 70502480 70502614 -126692818 + L1Md_F2 LINE L1 6435 6567 -15 7 1122 220 358 102 0 chr1 70502706 70502843 -126692589 + MIRb SINE MIR 118 268 0 8 1122 253 203 83 17 chr1 70502855 70502915 -126692517 - RMER6B LTR ERVK -397 64 1 9 1122 724 296 27 0 chr1 70502935 70503121 -126692311 - B3A SINE B2 0 198 8 1 1122 208 351 63 31 chr1 70503128 70503319 -126692113 - MIRb SINE MIR -6 262 66 1 1122 9004 2 0 0 chr1 70503452 70504675 -126690757 - L1Md_A LINE L1 0 6582 5360 1 1122 2277 15 0 0 chr1 70504665 70504929 -126690503 + L1_Mm LINE L1 4612 4875 -1008 1 1122 405 0 0 0 chr1 70504929 70504974 -126690458 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1122 237 344 43 27 chr1 70506060 70506248 -126689184 + L2a LINE L2 2962 3152 -274 1 1122 386 259 267 22 chr1 70506297 70506708 -126688724 - LTR48 LTR ERV1 -11 776 125 1 1122 24 0 0 0 chr1 70507320 70507344 -126688088 + AT_rich Low_complexity Low_complexity 1 24 0 1 1122 1554 32 0 16 chr1 70507870 70508059 -126687373 + B2_Mm1a SINE B2 2 187 -6 1 1122 405 0 0 0 chr1 70508126 70508171 -126687261 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1122 432 0 0 0 chr1 70508412 70508460 -126686972 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1122 181 277 112 138 chr1 70508561 70508829 -126686603 + L3 LINE CR1 4229 4489 0 2 1122 533 221 69 38 chr1 70509605 70509765 -126685667 + Lx5 LINE L1 6870 7034 -16 2 1122 228 135 0 0 chr1 70509765 70509802 -126685630 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 2 1122 743 267 235 48 chr1 70510555 70510972 -126684460 - Lx5 LINE L1 -18 7032 6538 2 1122 229 276 56 33 chr1 70510972 70511062 -126684370 + MER57C2 LTR ERV1 305 396 -38 2 1122 3531 196 45 24 chr1 70511063 70512161 -126683271 - Lx5 LINE L1 -719 6331 5216 2 1122 1571 145 15 0 chr1 70512159 70512421 -126683011 + L1_Mur2 LINE L1 4054 4319 -1558 2 1122 271 278 76 22 chr1 70513235 70513327 -126682105 - B4 SINE B4 -41 251 155 2 1122 410 295 127 72 chr1 70513632 70513994 -126681438 - RLTR26 LTR ERVK -149 493 112 2 1122 26 30 0 0 chr1 70514340 70514373 -126681059 + AT_rich Low_complexity Low_complexity 1 33 0 2 1122 1467 169 36 120 chr1 70514384 70514775 -126680657 + ORR1B1 LTR MaLR 13 370 -24 3 1122 1676 159 3 0 chr1 70514765 70515048 -126680384 - ORR1B1-int LTR MaLR -1647 316 33 3 1122 919 222 13 134 chr1 70515079 70515318 -126680114 - ORR1B1 LTR MaLR -144 250 41 3 1122 21 57 0 0 chr1 70515359 70515394 -126680038 + AT_rich Low_complexity Low_complexity 1 35 0 3 1122 548 282 57 6 chr1 70515398 70515555 -126679877 + B3A SINE B2 12 176 -22 3 1122 3139 151 158 6 chr1 70515555 70515845 -126679587 + RMER6D LTR ERVK 1 320 -400 3 1122 438 53 0 0 chr1 70515845 70515902 -126679530 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1122 3139 151 158 6 chr1 70515902 70516233 -126679199 + RMER6D LTR ERVK 321 716 -4 3 1122 483 291 82 27 chr1 70516233 70516259 -126679173 + B3 SINE B2 179 205 -11 3 1122 327 49 0 0 chr1 70516266 70516307 -126679125 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1122 304 151 0 36 chr1 70516489 70516544 -126678888 + ORR1B2 LTR MaLR 51 103 -264 3 1123 22 0 0 0 chr1 70516886 70516908 -126678524 + AT_rich Low_complexity Low_complexity 1 22 0 3 1123 21 36 0 0 chr1 70516969 70516997 -126678435 + AT_rich Low_complexity Low_complexity 1 28 0 3 1123 1702 222 30 112 chr1 70517199 70517771 -126677661 + RLTR11A LTR ERVK 1 525 -3 4 1123 250 344 141 0 chr1 70517973 70518101 -126677331 - L2b LINE L2 -1 3374 3229 4 1123 2306 162 196 29 chr1 70519280 70519541 -126675891 + RMER6C LTR ERVK 1 330 -360 4 1123 387 0 0 0 chr1 70519541 70519584 -126675848 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1123 2306 162 196 29 chr1 70519584 70519913 -126675519 + RMER6C LTR ERVK 331 690 0 4 1123 1440 11 11 6 chr1 70520029 70520208 -126675224 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1123 847 140 0 13 chr1 70520209 70520368 -126675064 + CT-rich Low_complexity Low_complexity 3 159 0 4 1123 21 0 0 0 chr1 70520807 70520828 -126674604 + AT_rich Low_complexity Low_complexity 1 21 0 4 1123 390 340 62 48 chr1 70520864 70521009 -126674423 + RSINE1 SINE B4 1 147 -18 4 1123 21 57 0 0 chr1 70521406 70521441 -126673991 + AT_rich Low_complexity Low_complexity 1 35 0 4 1123 558 127 104 3 chr1 70523461 70523563 -126671869 - B2_Mm2 SINE B2 -67 149 31 4 1123 297 0 0 0 chr1 70523563 70523596 -126671836 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 1123 360 103 0 0 chr1 70523599 70523657 -126671775 - Lx LINE L1 -8 6646 6589 5 1123 277 253 122 39 chr1 70523746 70523927 -126671505 - L1MEc LINE L1 -5612 788 593 5 1123 1342 110 42 19 chr1 70524022 70524235 -126671197 + URR1B DNA MER1_type 1 218 -7 5 1123 1103 168 17 46 chr1 70524357 70524594 -126670838 - Lx4A LINE L1 -2 7056 6827 5 1123 961 247 12 58 chr1 70525322 70525563 -126669869 + ORR1D1 LTR MaLR 1 230 -144 5 1123 421 320 47 57 chr1 70526114 70526412 -126669020 + L1MC1 LINE L1 6020 6314 -19 5 1123 241 340 52 0 chr1 70526668 70526765 -126668667 - MER3 DNA MER1_type -8 201 100 5 1123 503 223 3 0 chr1 70527024 70527316 -126668116 + (TG)n Simple_repeat Simple_repeat 1 293 0 5 1123 294 269 30 0 chr1 70527535 70527602 -126667830 - MER20 DNA MER1_type -128 91 23 5 1123 306 309 21 0 chr1 70528180 70528277 -126667155 + L2a LINE L2 3322 3420 -6 6 1123 204 372 21 21 chr1 70529234 70529330 -126666102 + MIRc SINE MIR 41 136 -132 6 1123 291 57 18 36 chr1 70529520 70529575 -126665857 - RMER1C Other Other 0 1342 1289 6 1123 1115 101 0 6 chr1 70529577 70529746 -126665686 + (GAA)n Simple_repeat Simple_repeat 1 168 0 6 1123 1207 185 40 65 chr1 70529749 70530026 -126665406 - RMER1C Other Other -149 1193 924 6 1123 387 89 0 0 chr1 70530792 70530848 -126664584 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1123 22 0 0 0 chr1 70530881 70530903 -126664529 + AT_rich Low_complexity Low_complexity 1 22 0 6 1123 24 32 0 0 chr1 70530966 70530997 -126664435 + AT_rich Low_complexity Low_complexity 1 31 0 6 1123 333 319 174 14 chr1 70532083 70532302 -126663130 - MT2A LTR ERVL -1 532 279 6 1123 1442 142 40 0 chr1 70532458 70532682 -126662750 + MTC LTR MaLR 1 233 -188 6 1123 2785 129 4 9 chr1 70532682 70533144 -126662288 - RMER17A2 LTR ERVK 0 906 447 7 1123 475 299 84 0 chr1 70533545 70533712 -126661720 + B3A SINE B2 18 198 0 7 1123 198 0 0 0 chr1 70533980 70534002 -126661430 + (TATAG)n Simple_repeat Simple_repeat 2 23 0 7 1123 339 85 0 0 chr1 70534018 70534065 -126661367 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1123 222 268 107 0 chr1 70534162 70534218 -126661214 + ID4_ SINE ID 11 72 -11 7 1123 534 79 0 0 chr1 70534218 70534294 -126661138 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1123 50 0 0 0 chr1 70534832 70534882 -126660550 + AT_rich Low_complexity Low_complexity 1 50 0 7 1123 243 295 62 23 chr1 70534941 70535042 -126660390 + MIRm SINE MIR 43 153 -123 7 1123 222 116 0 0 chr1 70535129 70535172 -126660260 + (TTG)n Simple_repeat Simple_repeat 3 45 0 7 1123 931 233 27 0 chr1 70535326 70535545 -126659887 + URR1B DNA MER1_type 1 225 0 7 1123 820 53 38 0 chr1 70535578 70535709 -126659723 + (TA)n Simple_repeat Simple_repeat 1 136 0 8 1123 436 124 310 26 chr1 70536017 70536133 -126659299 - B2_Mm2 SINE B2 0 195 47 8 1123 1086 93 93 0 chr1 70536218 70536380 -126659052 - B2_Mm1t SINE B2 -14 179 3 8 1123 488 313 34 13 chr1 70537080 70537229 -126658203 - RSINE1 SINE B4 -8 157 6 8 1123 960 31 133 0 chr1 70537256 70537384 -126658048 + B1_Mm SINE Alu 1 145 -2 8 1123 399 68 0 0 chr1 70542411 70542470 -126652962 + (TA)n Simple_repeat Simple_repeat 1 59 0 8 1123 202 288 152 0 chr1 70543702 70543761 -126651671 - MIR3 SINE MIR -21 187 120 8 1123 810 143 8 0 chr1 70544779 70544912 -126650520 + B1_Mus1 SINE Alu 7 140 -8 8 1123 333 0 0 0 chr1 70544912 70544949 -126650483 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1123 529 358 63 77 chr1 70545212 70545735 -126649697 + L1MEc LINE L1 107 622 -5778 8 1123 183 310 99 0 chr1 70545921 70545992 -126649440 - MIR SINE MIR -70 192 115 9 1123 854 192 0 29 chr1 70547988 70548160 -126647272 - RLTR12B LTR ERVK -9 519 353 9 1123 1457 285 52 18 chr1 70548301 70548744 -126646688 + Lx8 LINE L1 6816 7273 -200 9 1123 42 48 0 0 chr1 70550276 70550339 -126645093 + AT_rich Low_complexity Low_complexity 1 63 0 9 1123 373 358 107 68 chr1 70551362 70551728 -126643704 + LTR33 LTR ERVL 136 515 0 9 1123 586 192 8 222 chr1 70551856 70552104 -126643328 - RLTR20A LTR ERVK 0 534 340 9 1123 1606 188 55 60 chr1 70552105 70552485 -126642947 + RLTR41 LTR ERV1 1 378 -68 9 1123 1409 228 35 32 chr1 70552512 70552608 -126642824 - RLTR20A LTR ERVK -199 342 242 9 1123 2901 63 5 5 chr1 70552608 70552991 -126642441 - L1_Mus1 LINE L1 0 6567 6185 9 1123 1409 228 35 32 chr1 70552991 70553234 -126642198 - RLTR20A LTR ERVK -300 241 2 9 1123 1046 270 89 37 chr1 70553607 70553957 -126641475 + ORR1D2 LTR MaLR 1 368 -2 9 1123 298 175 25 0 chr1 70554497 70554577 -126640855 + (TA)n Simple_repeat Simple_repeat 2 83 0 9 1123 561 221 16 8 chr1 70554614 70554737 -126640695 - B1_Mur3 SINE Alu -6 143 20 1 1123 239 310 48 96 chr1 70554636 70554761 -126640671 - MT2B LTR ERVL -327 274 156 1 1123 749 198 0 88 chr1 70554792 70554997 -126640435 - B2_Mm2 SINE B2 -8 187 1 1 1123 35 41 0 0 chr1 70555000 70555049 -126640383 + AT_rich Low_complexity Low_complexity 1 49 0 1 1123 323 330 0 5 chr1 70555133 70555259 -126640173 + MIR SINE MIR 45 170 -98 1 1123 657 281 103 47 chr1 70555491 70555850 -126639582 - MTEa LTR MaLR 0 379 1 1 1123 23 33 0 0 chr1 70556497 70556527 -126638905 + AT_rich Low_complexity Low_complexity 1 30 0 1 1123 25 0 0 0 chr1 70556611 70556636 -126638796 + AT_rich Low_complexity Low_complexity 1 25 0 1 1123 423 0 0 0 chr1 70557450 70557497 -126637935 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1123 465 50 0 0 chr1 70557660 70557720 -126637712 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1123 338 380 18 42 chr1 70558130 70558295 -126637137 + RSINE1 SINE B4 5 165 0 1 1123 410 299 0 0 chr1 70558300 70558434 -126636998 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 1123 557 262 86 109 chr1 70559063 70559297 -126636135 - Lx9 LINE L1 -8 7636 7419 1 1123 543 128 0 0 chr1 70559297 70559383 -126636049 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1123 225 0 0 0 chr1 70559383 70559407 -126636025 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1123 557 262 86 109 chr1 70559407 70559557 -126635875 - Lx9 LINE L1 -226 7418 7261 1 1123 2945 167 15 8 chr1 70559803 70560327 -126635105 - RLTR12B LTR ERVK 0 528 1 1 1123 592 308 107 11 chr1 70560412 70560675 -126634757 + B4 SINE B4 3 290 -2 1 1123 1960 177 68 3 chr1 70561243 70561612 -126633820 - MTC LTR MaLR -26 395 3 1 1123 214 171 141 14 chr1 70562593 70562664 -126632768 - L3 LINE CR1 -2139 2350 2271 1 1123 246 188 0 48 chr1 70562692 70562776 -126632656 + CT-rich Low_complexity Low_complexity 2 81 0 1 1123 3071 159 52 52 chr1 70563035 70563065 -126632367 - MT2B LTR ERVL -11 590 550 1 1123 483 18 0 0 chr1 70563065 70563121 -126632311 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1123 3071 159 52 52 chr1 70563121 70563680 -126631752 - MT2B LTR ERVL -52 549 2 1 1123 180 0 0 0 chr1 70564118 70564138 -126631294 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1123 28 71 0 0 chr1 70564278 70564334 -126631098 + AT_rich Low_complexity Low_complexity 1 56 0 1 1123 2573 187 126 19 chr1 70564467 70565157 -126630275 - Lx9 LINE L1 -2 7642 6879 1 1123 233 146 21 0 chr1 70566558 70566606 -126628826 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1 1123 477 165 301 0 chr1 70566606 70566709 -126628723 - B1_Mur1 SINE Alu -14 135 2 1 1123 380 189 43 61 chr1 70566888 70567051 -126628381 - RMER17B LTR ERVK -499 459 300 1 1123 363 350 0 16 chr1 70567052 70567174 -126628258 + RSINE1 SINE B4 44 163 -2 1 1123 1202 54 0 0 chr1 70567899 70568046 -126627386 - B1_Mus2 SINE Alu 0 147 1 1 1123 31 44 0 0 chr1 70569360 70569405 -126626027 + AT_rich Low_complexity Low_complexity 1 45 0 1 1123 3697 173 63 0 chr1 70569790 70570467 -126624965 + RMER6D LTR ERVK 1 720 0 1 1123 261 0 0 0 chr1 70571114 70571143 -126624289 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1123 233 297 16 0 chr1 70571485 70571549 -126623883 + L2a LINE L2 3279 3343 -83 1 1123 21 0 0 0 chr1 70572364 70572385 -126623047 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 502 290 55 75 chr1 70572483 70572684 -126622748 + B3A SINE B2 1 197 -1 1 1123 1901 190 34 34 chr1 70574888 70575330 -126620102 - RMER10A LTR ERVL 0 442 1 1 1123 22 0 0 0 chr1 70576657 70576679 -126618753 + AT_rich Low_complexity Low_complexity 1 22 0 1 1123 303 288 140 50 chr1 70576898 70577077 -126618355 + MLT1A0 LTR MaLR 71 265 -100 1 1123 248 158 17 34 chr1 70577276 70577335 -126618097 + A-rich Low_complexity Low_complexity 2 59 0 1 1123 235 354 125 25 chr1 70578703 70578903 -126616529 - LTR16A1 LTR ERVL -81 375 156 1 1123 260 259 17 0 chr1 70578946 70579004 -126616428 + GA-rich Low_complexity Low_complexity 2 60 0 1 1123 767 134 0 7 chr1 70579005 70579148 -126616284 + (GA)n Simple_repeat Simple_repeat 1 142 0 1 1123 401 162 19 0 chr1 70579291 70579396 -126616036 + (CAGA)n Simple_repeat Simple_repeat 2 108 0 1 1123 257 341 78 36 chr1 70580297 70580516 -126614916 + Tigger15a DNA TcMar 113 340 -375 1 1123 486 0 0 0 chr1 70580892 70580946 -126614486 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1123 200 261 22 0 chr1 70581533 70581579 -126613853 + G-rich Low_complexity Low_complexity 3 49 0 1 1123 279 0 0 0 chr1 70582069 70582100 -126613332 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1123 414 85 0 0 chr1 70583826 70583885 -126611547 + (GGA)n Simple_repeat Simple_repeat 3 61 0 1 1123 345 282 114 60 chr1 70584063 70584229 -126611203 - B4 SINE B4 -86 206 32 1 1123 266 330 170 53 chr1 70584738 70584976 -126610456 + MIR SINE MIR 1 265 -3 1 1123 272 246 0 0 chr1 70586104 70586161 -126609271 + B3A SINE B2 3 59 -139 1 1123 509 30 15 0 chr1 70586184 70586251 -126609181 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1123 207 0 0 0 chr1 70586254 70586277 -126609155 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1123 827 128 132 16 chr1 70586278 70586468 -126608964 + Lx9 LINE L1 7432 7643 -1 1 1123 231 355 18 45 chr1 70586594 70586706 -126608726 - RMER12 LTR ERVK -471 851 743 1 1123 1067 70 0 0 chr1 70587129 70587271 -126608161 - B1_Mus2 SINE Alu 0 147 6 1 1123 665 201 27 49 chr1 70587271 70587312 -126608120 - ID_B1 SINE B4 0 224 46 1 1123 232 286 63 0 chr1 70587508 70587571 -126607861 + ID4_ SINE ID 3 69 -14 1 1123 389 158 0 0 chr1 70588839 70588896 -126606536 - ORR1C1 LTR MaLR 0 378 322 1 1123 375 0 36 18 chr1 70588900 70588956 -126606476 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 1 1123 1818 75 20 0 chr1 70588961 70589214 -126606218 - L1_Mus2 LINE L1 -456 6110 5853 1 1123 3273 71 7 20 chr1 70589214 70589659 -126605773 + L1_Mus2 LINE L1 6128 6566 0 1 1123 194 0 39 0 chr1 70589672 70589698 -126605734 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1123 1643 205 19 16 chr1 70589698 70590011 -126605421 - ORR1C1 LTR MaLR -64 314 1 1 1123 2264 151 44 77 chr1 70590231 70590713 -126604719 - RMER4A LTR ERVK 0 466 1 1 1123 292 265 112 0 chr1 70590713 70590811 -126604621 + MER92B LTR ERV1 372 480 -156 1 1123 270 0 0 0 chr1 70590928 70590958 -126604474 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1123 1004 239 144 29 chr1 70590962 70591310 -126604122 - MT2A LTR ERVL -122 411 53 1 1123 33498 6 0 5 chr1 70591400 70595366 -126600066 + L1Md_A LINE L1 1125 5047 -836 1 1123 3397 25 2 5 chr1 70595418 70595815 -126599617 - MTA_Mm LTR MaLR 0 396 1 1 1123 271 73 28 42 chr1 70596710 70596781 -126598651 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 1 1123 661 268 208 31 chr1 70596781 70597069 -126598363 - MTEb LTR MaLR -40 339 1 1 1123 272 288 205 26 chr1 70598080 70598383 -126597049 - Charlie1 DNA MER1_type 0 2781 2425 1 1123 374 312 55 0 chr1 70599094 70599222 -126596210 + Tigger12 DNA MER2_type 1788 1922 -37 1 1123 21 0 0 0 chr1 70599978 70599999 -126595433 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 417 20 0 0 chr1 70600336 70600386 -126595046 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1123 277 305 0 24 chr1 70600386 70600459 -126594973 - ID4_ SINE ID -10 73 3 1 1123 453 36 0 0 chr1 70600611 70600666 -126594766 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1123 921 116 0 0 chr1 70600675 70600821 -126594611 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 1 1123 23 33 0 0 chr1 70601385 70601415 -126594017 + AT_rich Low_complexity Low_complexity 1 30 0 1 1123 8335 32 0 0 chr1 70601893 70602871 -126592561 - L1Md_T LINE L1 -3 6579 5602 1 1123 240 171 0 0 chr1 70602869 70602910 -126592522 + L1Md_A LINE L1 1031 1071 -5653 1 1123 279 0 0 0 chr1 70603343 70603374 -126592058 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1123 519 69 0 0 chr1 70603374 70603446 -126591986 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1123 234 91 0 0 chr1 70604071 70604104 -126591328 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1123 612 235 23 0 chr1 70604266 70604398 -126591034 + RMER2 LTR ERV1 2 136 -431 1 1123 8513 47 1 1 chr1 70604399 70605474 -126589958 - L1_Mm LINE L1 -2265 3618 2544 1 1123 6632 54 2 2 chr1 70605474 70606312 -126589120 + L1Md_F2 LINE L1 5745 6582 0 1 1123 889 50 0 0 chr1 70607274 70607394 -126588038 - L1Md_T LINE L1 -2 6580 6461 1 1123 215 339 8 59 chr1 70608039 70608158 -126587274 - L2 LINE L2 -459 2960 2848 1 1123 2286 219 7 40 chr1 70608722 70609294 -126586138 - RLTR31_Mur LTR ERVK 0 553 1 1 1123 1538 174 3 19 chr1 70609303 70609620 -126585812 + RMER3D-int LTR ERVK 2506 2817 -25 1 1123 2555 225 36 36 chr1 70609634 70610243 -126585189 + RLTR17 LTR ERVK 1 609 -83 1 1123 189 107 0 0 chr1 70610314 70610342 -126585090 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 1 1123 273 269 101 65 chr1 70610906 70611045 -126584387 - Lx8 LINE L1 -135 7338 7195 1 1123 245 333 36 79 chr1 70611252 70611392 -126584040 + RSINE1 SINE B4 10 143 -22 1 1123 405 70 0 0 chr1 70611404 70611461 -126583971 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1123 426 39 0 0 chr1 70611718 70611770 -126583662 + (TATG)n Simple_repeat Simple_repeat 2 53 0 1 1123 2047 39 12 4 chr1 70611770 70612108 -126583324 + L1Md_F3 LINE L1 6316 6584 0 1 1123 22 0 0 0 chr1 70612161 70612183 -126583249 + AT_rich Low_complexity Low_complexity 1 22 0 1 1123 306 0 0 0 chr1 70612189 70612223 -126583209 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1123 317 276 224 0 chr1 70612339 70612455 -126582977 - B1_Mus1 SINE Alu -5 143 2 1 1123 23 33 0 0 chr1 70612504 70612534 -126582898 + AT_rich Low_complexity Low_complexity 1 30 0 2 1123 31 0 0 0 chr1 70612741 70612772 -126582660 + AT_rich Low_complexity Low_complexity 1 31 0 2 1123 498 345 41 5 chr1 70614143 70614338 -126581094 + B3 SINE B2 1 202 -14 2 1123 252 0 0 0 chr1 70614354 70614382 -126581050 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1123 252 0 0 0 chr1 70615500 70615528 -126579904 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1123 481 355 6 62 chr1 70616008 70616170 -126579262 - B4 SINE B4 -1 291 139 2 1123 234 131 66 0 chr1 70616693 70616754 -126578678 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 2 1123 504 0 0 0 chr1 70616775 70616831 -126578601 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1123 28 0 0 0 chr1 70617234 70617262 -126578170 + AT_rich Low_complexity Low_complexity 1 28 0 2 1123 3276 95 2 27 chr1 70617443 70617929 -126577503 + Lx LINE L1 6176 6649 -5 2 1123 1018 215 20 0 chr1 70617941 70618141 -126577291 + B3 SINE B2 3 206 -10 2 1123 518 269 114 114 chr1 70618294 70618567 -126576865 - B4 SINE B4 -18 274 2 2 1123 456 292 0 19 chr1 70618988 70619096 -126576336 + Charlie13b DNA Charlie 132 237 -275 2 1123 958 188 113 5 chr1 70621426 70621629 -126573803 - URR1A DNA MER1_type 0 226 2 2 1123 22 0 0 0 chr1 70622954 70622976 -126572456 + AT_rich Low_complexity Low_complexity 1 22 0 2 1123 1121 65 84 0 chr1 70624980 70625167 -126570265 + L1Md_F2 LINE L1 6393 6582 0 2 1123 356 357 142 4 chr1 70625479 70625718 -126569714 - B4A SINE B4 -20 272 1 2 1123 438 273 133 12 chr1 70626663 70626904 -126568528 - Lx8 LINE L1 -32 7612 7343 2 1123 1926 158 17 14 chr1 70626908 70627261 -126568171 + RLTR15 LTR ERVK 6 359 0 2 1123 1179 305 27 80 chr1 70627273 70627836 -126567596 - Lx8 LINE L1 -308 7336 6804 2 1123 2630 284 65 56 chr1 70627835 70629600 -126565832 - Lx8 LINE L1 -928 6545 4745 2 1123 489 17 0 0 chr1 70631309 70631367 -126564065 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1123 1259 265 128 26 chr1 70632543 70632671 -126562761 - Lx9 LINE L1 0 7644 7485 2 1123 255 31 0 0 chr1 70632671 70632703 -126562729 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1123 1259 265 128 26 chr1 70632703 70633082 -126562350 - Lx9 LINE L1 -160 7484 7085 2 1123 35 41 0 0 chr1 70633304 70633353 -126562079 + AT_rich Low_complexity Low_complexity 1 49 0 2 1123 1298 57 6 0 chr1 70633762 70633938 -126561494 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 2 1123 498 75 0 0 chr1 70634233 70634300 -126561132 + (TCC)n Simple_repeat Simple_repeat 3 69 0 2 1123 1112 69 7 0 chr1 70634304 70634449 -126560983 - B1_Mus1 SINE Alu -1 147 2 2 1123 423 264 163 0 chr1 70634943 70635072 -126560360 + B3A SINE B2 2 151 -47 2 1123 464 111 0 12 chr1 70635079 70635161 -126560271 + (CATA)n Simple_repeat Simple_repeat 2 82 0 2 1123 1096 58 7 0 chr1 70635332 70635470 -126559962 + B1_Mm SINE Alu 1 139 -8 2 1123 301 305 27 62 chr1 70635541 70635653 -126559779 + RSINE1 SINE B4 58 165 0 2 1123 203 215 31 0 chr1 70635653 70635718 -126559714 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 2 1123 1613 165 34 55 chr1 70635857 70636236 -126559196 - Lx5 LINE L1 -1035 6015 5645 2 1123 653 154 8 0 chr1 70636234 70636351 -126559081 - Lx5 LINE L1 -496 5384 5267 2 1123 2443 241 20 153 chr1 70636462 70637311 -126558121 - Lx5 LINE L1 -176 6874 6139 2 1123 633 193 7 41 chr1 70637289 70637435 -126557997 - Lx5 LINE L1 -1010 4870 4730 2 1123 2987 224 34 19 chr1 70637438 70637520 -126557912 + Lx6 LINE L1 6059 6138 -1322 2 1123 378 0 0 0 chr1 70637520 70637562 -126557870 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1123 2987 224 34 19 chr1 70637562 70638163 -126557269 + Lx6 LINE L1 6139 6752 -708 2 1123 383 253 141 6 chr1 70638181 70638381 -126557051 - L1MA9 LINE L1 -43 6248 6032 2 1123 288 130 0 0 chr1 70639104 70639150 -126556282 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1123 415 284 115 74 chr1 70639199 70639469 -126555963 - B4 SINE B4 -10 282 2 2 1123 2137 276 92 27 chr1 70639991 70641133 -126554299 - L1MC2 LINE L1 -26 6318 5107 2 1123 507 33 0 0 chr1 70641133 70641194 -126554238 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 2 1123 853 267 78 18 chr1 70641194 70641309 -126554123 - L1MC2 LINE L1 -1040 5106 4986 2 1123 291 307 104 28 chr1 70641491 70641635 -126553797 + L2a LINE L2 3270 3424 -2 2 1123 513 218 27 95 chr1 70642688 70642835 -126552597 + B3A SINE B2 1 137 -61 2 1123 438 36 0 0 chr1 70642844 70642900 -126552532 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1123 471 168 58 45 chr1 70642925 70643081 -126552351 - Lx9 LINE L1 -1 7643 7486 2 1123 200 59 29 0 chr1 70643158 70643192 -126552240 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2 1123 1077 76 14 0 chr1 70643221 70643366 -126552066 + B1_Mus2 SINE Alu 1 147 0 2 1123 804 104 0 0 chr1 70643388 70643494 -126551938 + U6 snRNA snRNA 1 106 -1 2 1123 6638 130 85 2 chr1 70643494 70645369 -126550063 + L1_Mus3 LINE L1 4565 6622 -16 2 1123 315 0 0 0 chr1 70645383 70645418 -126550014 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1123 3872 116 6 51 chr1 70645429 70646076 -126549356 + Lx3A LINE L1 6357 6974 -7 2 1123 300 53 0 0 chr1 70646077 70646115 -126549317 + (AAATG)n Simple_repeat Simple_repeat 3 40 0 2 1123 23 54 0 0 chr1 70646131 70646168 -126549264 + AT_rich Low_complexity Low_complexity 1 37 0 2 1123 546 43 0 0 chr1 70646916 70646985 -126548447 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 2 1123 627 185 217 11 chr1 70647119 70647294 -126548138 - B3 SINE B2 -3 213 3 2 1124 1131 88 0 0 chr1 70649395 70649543 -126545889 + B1_Mus1 SINE Alu 1 148 0 2 1124 236 53 26 0 chr1 70649547 70649585 -126545847 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1124 382 318 40 0 chr1 70649591 70649717 -126545715 - Lx8 LINE L1 -239 7234 7104 2 1124 264 264 196 28 chr1 70649725 70649904 -126545528 + Lx8 LINE L1 7264 7472 -1 2 1124 25 51 0 0 chr1 70649918 70649957 -126545475 + AT_rich Low_complexity Low_complexity 1 39 0 2 1124 651 342 98 42 chr1 70650351 70651043 -126544389 + L1MEc LINE L1 36 766 -5634 2 1124 1286 222 80 0 chr1 70651065 70651340 -126544092 + Lx5 LINE L1 6754 7050 0 2 1124 364 248 43 0 chr1 70651520 70651637 -126543795 + L1MEc LINE L1 973 1094 -5306 2 1124 384 244 42 0 chr1 70651716 70651835 -126543597 + L1MEc LINE L1 973 1096 -5304 2 1124 464 239 46 0 chr1 70652055 70652164 -126543268 - Lx8 LINE L1 -428 7045 6932 2 1124 240 35 0 0 chr1 70652321 70652350 -126543082 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1124 842 263 91 91 chr1 70652379 70652751 -126542681 + MTEa LTR MaLR 6 377 -2 2 1124 2161 251 129 57 chr1 70652818 70653588 -126541844 + RMER13A LTR ERVK 36 860 0 2 1124 3226 260 57 77 chr1 70653677 70654763 -126540669 - RMER1B Other Other -2 1064 1 2 1124 501 278 62 9 chr1 70655210 70655435 -126539997 + L1M5 LINE L1 2588 2824 -3322 2 1124 715 346 58 11 chr1 70655494 70655754 -126539678 + B4A SINE B4 3 274 -18 2 1124 198 71 0 0 chr1 70656776 70656804 -126538628 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1124 735 12 0 0 chr1 70656804 70656888 -126538544 + (GAAAA)n Simple_repeat Simple_repeat 5 88 0 2 1124 183 152 0 0 chr1 70657351 70657397 -126538035 + T-rich Low_complexity Low_complexity 3 48 0 2 1124 239 133 0 22 chr1 70657503 70657549 -126537883 + CT-rich Low_complexity Low_complexity 1 45 0 2 1124 411 233 223 0 chr1 70657570 70657673 -126537759 - B1_Mus2 SINE Alu -19 128 3 2 1124 228 333 70 16 chr1 70657673 70657688 -126537744 - B4 SINE B4 -88 157 70 2 1124 5882 83 92 1 chr1 70657747 70658599 -126536833 - RLTR13B3 LTR ERVK 0 929 1 2 1124 308 168 19 19 chr1 70659028 70659131 -126536301 + GA-rich Low_complexity Low_complexity 2 104 0 2 1124 435 67 117 15 chr1 70659181 70659318 -126536114 + (CAGA)n Simple_repeat Simple_repeat 4 154 0 2 1124 372 292 0 28 chr1 70659320 70659429 -126536003 + Lx8 LINE L1 7218 7323 -150 2 1124 7520 92 18 1 chr1 70659567 70660893 -126534539 - L1_Mus3 LINE L1 0 6638 5295 2 1124 3640 78 2 18 chr1 70660894 70661387 -126534045 - L1_Mus2 LINE L1 0 6566 6082 2 1124 258 88 0 0 chr1 70661387 70661421 -126534011 + L1_Mus2 LINE L1 6053 6086 -480 2 1124 6800 47 8 1 chr1 70661443 70662289 -126533143 - L1Md_F2 LINE L1 0 6582 5731 2 1124 298 266 12 12 chr1 70662306 70662386 -126533046 + GA-rich Low_complexity Low_complexity 3 82 0 2 1124 1872 187 26 0 chr1 70662422 70662765 -126532667 + Lx9 LINE L1 7066 7417 -227 2 1124 495 48 0 0 chr1 70662766 70662828 -126532604 + (CATA)n Simple_repeat Simple_repeat 4 65 0 2 1124 390 115 0 0 chr1 70662839 70662900 -126532532 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1124 586 294 116 44 chr1 70662900 70663288 -126532144 - L1M2 LINE L1 -511 5780 5365 2 1124 513 242 88 23 chr1 70663327 70663543 -126531889 - L1M2 LINE L1 -846 5297 5068 2 1124 430 306 90 7 chr1 70663705 70663850 -126531582 + RSINE1 SINE B4 4 160 -5 2 1124 198 209 0 0 chr1 70663888 70663931 -126531501 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1124 307 292 0 0 chr1 70663976 70664048 -126531384 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1124 27 0 0 0 chr1 70664048 70664075 -126531357 + AT_rich Low_complexity Low_complexity 1 27 0 2 1124 252 0 0 0 chr1 70664095 70664123 -126531309 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1124 386 273 40 13 chr1 70664134 70664286 -126531146 + L1MA9 LINE L1 5966 6121 -191 2 1124 396 143 0 0 chr1 70666271 70666341 -126529091 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1124 3755 268 74 22 chr1 70666356 70667486 -126527946 - Lx9 LINE L1 -128 7516 6328 2 1124 22 0 0 0 chr1 70669867 70669889 -126525543 + AT_rich Low_complexity Low_complexity 1 22 0 2 1124 303 28 0 0 chr1 70670988 70671024 -126524408 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1124 212 137 38 38 chr1 70671177 70671230 -126524202 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 2 1124 243 0 0 0 chr1 70671259 70671286 -126524146 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 2 1124 212 211 0 55 chr1 70673211 70673266 -126522166 + (GGGTG)n Simple_repeat Simple_repeat 2 53 0 2 1124 198 0 0 0 chr1 70673848 70673870 -126521562 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1124 40897 11 1 6 chr1 70675519 70682137 -126513295 - L1Md_A LINE L1 0 6582 1 2 1124 396 0 0 0 chr1 70682519 70682563 -126512869 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1124 1324 315 78 10 chr1 70682976 70683575 -126511857 - Lx8 LINE L1 -447 7026 6387 2 1124 705 341 69 13 chr1 70683576 70683953 -126511479 + Lx8 LINE L1 7050 7447 -26 2 1124 24 53 0 0 chr1 70684085 70684123 -126511309 + AT_rich Low_complexity Low_complexity 1 38 0 3 1124 501 17 0 0 chr1 70685223 70685281 -126510151 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1124 189 0 0 0 chr1 70685433 70685454 -126509978 + (TTA)n Simple_repeat Simple_repeat 2 22 0 3 1124 920 333 79 33 chr1 70685455 70686436 -126508996 + Lx9 LINE L1 4716 5787 -1909 3 1124 486 0 0 0 chr1 70686477 70686531 -126508901 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1124 408 88 0 0 chr1 70686531 70686587 -126508845 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1124 654 305 6 24 chr1 70686588 70686756 -126508676 - MTE2b LTR MaLR -134 245 81 3 1124 772 226 36 12 chr1 70686765 70686931 -126508501 + MTE2b LTR MaLR 151 320 -59 3 1124 501 17 0 0 chr1 70687035 70687093 -126508339 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1124 561 351 21 25 chr1 70687094 70687416 -126508016 + Lx9 LINE L1 7008 7457 -187 3 1124 27 29 0 0 chr1 70687531 70687565 -126507867 + AT_rich Low_complexity Low_complexity 1 34 0 3 1124 237 297 0 0 chr1 70687962 70688053 -126507379 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 3 1124 1643 301 42 20 chr1 70688733 70689542 -126505890 - L1_Rod LINE L1 -3464 2416 1590 3 1124 1638 171 48 22 chr1 70689542 70689854 -126505578 - MTC LTR MaLR -1 420 101 3 1124 1679 142 7 7 chr1 70689854 70690124 -126505308 + Lx3A LINE L1 6678 6947 -34 3 1124 576 0 0 0 chr1 70690128 70690192 -126505240 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 3 1124 700 158 0 16 chr1 70690201 70690323 -126505109 - MTC LTR MaLR -301 120 1 3 1124 583 296 46 64 chr1 70690323 70690767 -126504665 - L1_Rod LINE L1 -4286 1594 1156 3 1124 201 315 184 7 chr1 70691197 70691344 -126504088 + MIRm SINE MIR 98 270 -6 3 1124 855 29 0 0 chr1 70691906 70692008 -126503424 + (TC)n Simple_repeat Simple_repeat 2 103 0 3 1124 468 0 0 0 chr1 70692292 70692344 -126503088 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1124 431 341 93 31 chr1 70693491 70693748 -126501684 - LTR16A LTR ERVL -66 385 113 3 1124 230 0 0 32 chr1 70695789 70695820 -126499612 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 3 1124 23 33 0 0 chr1 70695903 70695933 -126499499 + AT_rich Low_complexity Low_complexity 1 30 0 3 1124 345 56 100 0 chr1 70696014 70696104 -126499328 + CT-rich Low_complexity Low_complexity 3 101 0 3 1124 1201 44 13 226 chr1 70696790 70697025 -126498407 - B2_Mm2 SINE B2 -8 187 3 3 1124 612 225 29 14 chr1 70697176 70697316 -126498116 - MTD LTR MaLR -2 417 276 3 1124 446 376 41 9 chr1 70697378 70697598 -126497834 - MTD LTR MaLR -162 259 33 3 1124 3375 219 75 32 chr1 70698174 70699046 -126496386 + Lx7 LINE L1 6784 7692 -4 3 1124 305 298 44 29 chr1 70699910 70700114 -126495318 + HAL1 LINE L1 1442 1648 -859 3 1124 347 254 0 0 chr1 70700479 70700542 -126494890 - B4 SINE B4 -8 284 222 3 1124 426 271 152 29 chr1 70700596 70700767 -126494665 - B4 SINE B4 -68 224 33 3 1124 509 0 0 16 chr1 70701353 70701415 -126494017 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 3 1124 516 338 13 13 chr1 70701681 70701840 -126493592 - B4A SINE B4 -78 214 56 3 1124 25 65 0 0 chr1 70702596 70702642 -126492790 + AT_rich Low_complexity Low_complexity 1 46 0 3 1124 472 338 53 33 chr1 70703716 70704276 -126491156 - L1ME3A LINE L1 -126 6047 5473 3 1124 941 330 40 14 chr1 70705176 70705527 -126489905 - MLT1A0 LTR MaLR -5 360 1 3 1124 25 0 0 0 chr1 70705674 70705699 -126489733 + AT_rich Low_complexity Low_complexity 1 25 0 3 1124 1175 27 0 40 chr1 70705699 70705851 -126489581 - B1_Mm SINE Alu 0 147 2 3 1124 306 149 25 66 chr1 70706055 70706177 -126489255 + (TCTCTG)n Simple_repeat Simple_repeat 2 118 0 3 1124 4158 113 8 0 chr1 70707850 70708453 -126486979 - Lx LINE L1 0 6654 6047 3 1124 643 335 24 38 chr1 70709157 70709368 -126486064 + ID_B1 SINE B4 6 213 -11 3 1124 226 331 74 37 chr1 70710279 70710442 -126484990 - MIRb SINE MIR -35 233 65 3 1124 2436 137 0 1 chr1 70711034 70711417 -126484015 - Lx7 LINE L1 -1965 5731 5352 3 1124 3058 66 2 0 chr1 70711422 70711817 -126483615 + Lx LINE L1 5695 6090 -564 3 1124 2788 32 0 0 chr1 70711819 70712157 -126483275 - ORR1A0 LTR MaLR -8 338 1 3 1124 2207 107 85 58 chr1 70712157 70712540 -126482892 + Lx LINE L1 6084 6468 -186 3 1124 6266 100 1 2 chr1 70712921 70713809 -126481623 - L1_Mm LINE L1 -3 5880 4994 3 1124 24 0 0 0 chr1 70714593 70714617 -126480815 + AT_rich Low_complexity Low_complexity 1 24 0 3 1124 1310 163 18 0 chr1 70715806 70716027 -126479405 + URR1B DNA MER1_type 1 225 0 3 1124 23 33 0 0 chr1 70716479 70716509 -126478923 + AT_rich Low_complexity Low_complexity 1 30 0 3 1124 1224 203 106 2 chr1 70716717 70717134 -126478298 - MT2A LTR ERVL -73 460 1 3 1124 7504 32 18 1 chr1 70717249 70718149 -126477283 - L1Md_F3 LINE L1 0 6584 5670 3 1124 302 280 27 0 chr1 70719272 70719347 -126476085 - ID SINE ID -146 78 2 3 1124 301 324 79 29 chr1 70720539 70720679 -126474753 - L2 LINE L2 -838 2581 2435 3 1124 21 0 0 0 chr1 70720962 70720983 -126474449 + AT_rich Low_complexity Low_complexity 1 21 0 3 1124 220 148 32 32 chr1 70721343 70721406 -126474026 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 3 1124 601 333 125 18 chr1 70721433 70721705 -126473727 - MTEa LTR MaLR 0 379 79 3 1124 1199 86 6 0 chr1 70721740 70721914 -126473518 + (GGA)n Simple_repeat Simple_repeat 3 177 0 3 1124 513 44 0 0 chr1 70721914 70721982 -126473450 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 3 1124 966 100 0 0 chr1 70721982 70722122 -126473310 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 3 1124 315 280 87 95 chr1 70724653 70724720 -126470712 - Tigger7 DNA MER2_type -70 2421 2356 3 1124 829 98 64 57 chr1 70724720 70724861 -126470571 + B1_Mus2 SINE Alu 3 144 -3 3 1124 315 280 87 95 chr1 70724861 70725034 -126470398 - Tigger7 DNA MER2_type -136 2355 2183 3 1124 4545 105 23 55 chr1 70725036 70725775 -126469657 + RLTR19B LTR ERVK 1 715 0 3 1124 3700 152 63 24 chr1 70725840 70726543 -126468889 - Lx2 LINE L1 0 6997 6268 3 1124 517 327 40 66 chr1 70726544 70726770 -126468662 - Tigger7 DNA MER2_type -2195 296 77 3 1124 976 217 54 10 chr1 70726778 70726983 -126468449 - B3 SINE B2 -2 214 1 3 1124 309 261 47 76 chr1 70727474 70727685 -126467747 - L1MA9 LINE L1 -11 6301 6097 3 1124 341 301 8 0 chr1 70727698 70727821 -126467611 + L1MA8 LINE L1 5911 6034 -257 3 1124 31 26 0 0 chr1 70727875 70727913 -126467519 + AT_rich Low_complexity Low_complexity 1 38 0 3 1124 529 177 248 0 chr1 70729025 70729138 -126466294 + B1_Mur3 SINE Alu 1 141 -8 3 1124 324 0 0 0 chr1 70729138 70729174 -126466258 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1124 1370 255 56 5 chr1 70729491 70729865 -126465567 + Lx5 LINE L1 6635 7027 -23 3 1124 219 88 0 0 chr1 70729868 70729902 -126465530 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 3 1124 818 20 10 0 chr1 70730462 70730562 -126464870 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 1124 478 225 0 24 chr1 70732385 70732549 -126462883 + (CATA)n Simple_repeat Simple_repeat 4 163 0 3 1124 414 195 0 45 chr1 70732605 70732739 -126462693 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 3 1124 2896 177 21 0 chr1 70732907 70733473 -126461959 - L1_Mur2 LINE L1 -30 5847 5270 3 1124 21041 21 0 0 chr1 70733717 70736291 -126459141 + L1Md_T LINE L1 3013 5586 -297 3 1124 9038 5 0 0 chr1 70736291 70737287 -126458145 + L1Md_T LINE L1 5587 6582 0 3 1124 339 25 0 0 chr1 70737393 70737433 -126457999 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1124 243 0 0 0 chr1 70737662 70737689 -126457743 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1124 495 0 0 0 chr1 70737769 70737824 -126457608 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1124 367 299 106 19 chr1 70738364 70738572 -126456860 + MLT1D LTR MaLR 85 310 -195 3 1124 283 226 48 0 chr1 70738591 70738675 -126456757 + MLT1D LTR MaLR 532 619 -8 3 1124 237 395 39 34 chr1 70738799 70738977 -126456455 - MLT1K LTR MaLR -136 459 281 3 1124 22 0 0 0 chr1 70740898 70740920 -126454512 + AT_rich Low_complexity Low_complexity 1 22 0 3 1124 1000 257 21 4 chr1 70741639 70741881 -126453551 - B4A SINE B4 -46 246 1 3 1124 194 368 34 8 chr1 70743852 70743970 -126451462 - L2b LINE L2 -18 3357 3237 3 1124 289 282 28 0 chr1 70744042 70744113 -126451319 + ORR1E LTR MaLR 1 73 -286 3 1124 273 321 46 86 chr1 70744195 70744369 -126451063 + ORR1E LTR MaLR 95 261 -98 3 1124 1534 251 80 122 chr1 70744633 70745046 -126450386 + RMER13B LTR ERVK 5 363 -545 3 1124 666 55 0 0 chr1 70745046 70745137 -126450295 + (TC)n Simple_repeat Simple_repeat 2 92 0 3 1124 1534 251 80 122 chr1 70745137 70745639 -126449793 + RMER13B LTR ERVK 364 881 -27 3 1124 375 292 33 0 chr1 70746027 70746147 -126449285 + RMER15 LTR ERVL 452 575 0 3 1124 310 344 8 39 chr1 70747044 70747174 -126448258 + L4 LINE RTE 1180 1305 -724 3 1124 189 244 0 0 chr1 70747711 70747756 -126447676 - MIR SINE MIR -116 146 102 3 1124 843 107 36 0 chr1 70747841 70747981 -126447451 - Lx3C LINE L1 -2 6974 6830 3 1124 228 250 110 24 chr1 70748854 70748936 -126446496 + MARNA DNA Mariner 256 344 -242 3 1124 252 213 50 0 chr1 70749372 70749440 -126445992 + PB1 SINE Alu 68 141 -8 3 1124 207 162 0 0 chr1 70750054 70750091 -126445341 + GA-rich Low_complexity Low_complexity 4 40 0 3 1124 640 204 250 0 chr1 70750128 70750300 -126445132 + B3 SINE B2 2 216 0 3 1124 23 0 0 0 chr1 70751952 70751975 -126443457 + AT_rich Low_complexity Low_complexity 1 23 0 3 1124 1093 75 7 14 chr1 70753490 70753638 -126441794 - B1_Mus1 SINE Alu 0 148 2 3 1124 344 253 27 0 chr1 70753655 70753730 -126441702 + B4 SINE B4 1 77 -215 3 1124 654 13 0 0 chr1 70753731 70753806 -126441626 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 3 1124 6684 74 39 23 chr1 70753819 70754907 -126440525 - L1_Mus2 LINE L1 0 6566 5476 3 1124 23 78 0 0 chr1 70755368 70755419 -126440013 + AT_rich Low_complexity Low_complexity 1 51 0 3 1124 281 333 8 31 chr1 70755432 70755562 -126439870 + CT-rich Low_complexity Low_complexity 2 128 0 3 1124 479 308 120 44 chr1 70755944 70756470 -126438962 - L1MC1 LINE L1 -23 6310 5745 3 1124 306 0 0 0 chr1 70756508 70756542 -126438890 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1124 265 369 55 16 chr1 70756635 70757017 -126438415 - L1MC1 LINE L1 -763 5570 5172 3 1124 6118 80 16 1 chr1 70757035 70757908 -126437524 - L1Md_F2 LINE L1 -27 6555 5670 4 1124 3385 49 0 0 chr1 70757907 70758337 -126437095 + L1Md_F2 LINE L1 5262 5691 -192 4 1124 22 35 0 0 chr1 70758518 70758547 -126436885 + AT_rich Low_complexity Low_complexity 1 29 0 4 1124 455 260 94 0 chr1 70758554 70758681 -126436751 - B1_Mur1 SINE Alu -9 140 2 4 1124 532 279 17 83 chr1 70760728 70760908 -126434524 - MTE2a LTR MaLR -10 369 202 4 1124 942 138 11 6 chr1 70760912 70761087 -126434345 + GA-rich Low_complexity Low_complexity 3 178 0 4 1124 465 180 0 0 chr1 70761080 70761169 -126434263 + G-rich Low_complexity Low_complexity 3 91 0 4 1124 505 248 63 100 chr1 70761169 70761441 -126433991 - MTE2a LTR MaLR -107 312 3 4 1124 857 148 90 11 chr1 70761473 70761651 -126433781 + B2_Mm2 SINE B2 1 192 -3 4 1124 22 56 0 0 chr1 70761829 70761865 -126433567 + AT_rich Low_complexity Low_complexity 1 36 0 4 1124 22 35 0 0 chr1 70762319 70762348 -126433084 + AT_rich Low_complexity Low_complexity 1 29 0 4 1124 302 309 93 72 chr1 70765580 70765870 -126429562 - MER33 DNA MER1_type 0 324 29 4 1124 207 292 0 0 chr1 70766702 70766791 -126428641 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1124 928 174 0 0 chr1 70767146 70767295 -126428137 + B1_Mur4 SINE Alu 2 150 0 4 1124 873 59 136 0 chr1 70767831 70767949 -126427483 + B1_Mus2 SINE Alu 2 135 -12 4 1124 207 0 0 0 chr1 70767950 70767973 -126427459 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1124 188 135 0 26 chr1 70768205 70768243 -126427189 + (TATG)n Simple_repeat Simple_repeat 3 39 0 4 1124 1257 174 105 10 chr1 70768845 70769159 -126426273 - Lx9 LINE L1 -2 7642 7299 4 1124 21 36 0 0 chr1 70769239 70769267 -126426165 + AT_rich Low_complexity Low_complexity 1 28 0 4 1124 1931 86 11 15 chr1 70769429 70769701 -126425731 + ORR1A2 LTR MaLR 49 319 -8 4 1124 26 64 0 0 chr1 70770652 70770699 -126424733 + AT_rich Low_complexity Low_complexity 1 47 0 4 1124 1116 192 19 9 chr1 70777327 70777537 -126417895 + B3 SINE B2 2 213 -3 4 1124 28 0 0 0 chr1 70777692 70777720 -126417712 + AT_rich Low_complexity Low_complexity 1 28 0 4 1124 21 0 0 0 chr1 70778158 70778179 -126417253 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 371 306 54 27 chr1 70778572 70778683 -126416749 + PB1D10 SINE Alu 3 116 -1 4 1124 212 0 0 35 chr1 70778771 70778800 -126416632 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1125 1081 207 41 5 chr1 70779306 70779524 -126415908 - URR1A DNA MER1_type 0 226 1 4 1125 21 0 0 0 chr1 70779802 70779823 -126415609 + AT_rich Low_complexity Low_complexity 1 21 0 4 1125 180 152 0 0 chr1 70779993 70780026 -126415406 + (TGG)n Simple_repeat Simple_repeat 2 34 0 4 1125 26 64 0 0 chr1 70782246 70782293 -126413139 + AT_rich Low_complexity Low_complexity 1 47 0 4 1125 193 191 31 31 chr1 70782953 70783018 -126412414 + (TATG)n Simple_repeat Simple_repeat 4 68 0 4 1125 423 0 0 0 chr1 70783632 70783679 -126411753 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1125 331 241 33 72 chr1 70783794 70783946 -126411486 - YREP_Mm Unknown Unknown -1485 327 182 4 1125 749 223 13 6 chr1 70783813 70783967 -126411465 + ID_B1 SINE B4 87 243 -49 4 1125 685 336 26 26 chr1 70783995 70784267 -126411165 + B4A SINE B4 14 285 -7 4 1125 309 51 0 0 chr1 70784408 70784447 -126410985 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1125 66 73 0 0 chr1 70784941 70785077 -126410355 + AT_rich Low_complexity Low_complexity 1 136 0 4 1125 263 72 0 23 chr1 70785979 70786022 -126409410 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 4 1125 4457 179 36 4 chr1 70786022 70786803 -126408629 - Lx5 LINE L1 -16 7034 6229 4 1125 249 274 14 14 chr1 70787130 70787204 -126408228 + Cheshire DNA MER1_type 164 237 -2183 4 1125 406 341 87 29 chr1 70788862 70789137 -126406295 + B4A SINE B4 2 292 0 4 1125 240 163 0 0 chr1 70789755 70789798 -126405634 + (CCA)n Simple_repeat Simple_repeat 1 43 0 4 1125 920 139 0 7 chr1 70789816 70789954 -126405478 - B1_Mus2 SINE Alu 0 147 11 4 1125 362 264 10 52 chr1 70790175 70790271 -126405161 + RSINE1 SINE B4 74 165 0 4 1125 288 0 0 0 chr1 70792165 70792197 -126403235 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1125 699 180 86 0 chr1 70792197 70792325 -126403107 - B1_Mur4 SINE Alu -10 140 2 4 1125 408 271 6 12 chr1 70792799 70792967 -126402465 + (TA)n Simple_repeat Simple_repeat 2 168 0 4 1125 23 0 0 0 chr1 70793809 70793832 -126401600 + AT_rich Low_complexity Low_complexity 1 23 0 4 1125 22 0 0 0 chr1 70796162 70796184 -126399248 + AT_rich Low_complexity Low_complexity 1 22 0 4 1125 216 86 0 0 chr1 70796482 70796517 -126398915 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1125 238 143 86 35 chr1 70798551 70798609 -126396823 - L1MC4a LINE L1 -1197 6685 6625 4 1125 611 311 38 0 chr1 70798989 70799201 -126396231 + L3b LINE CR1 10 229 -253 4 1125 180 204 127 18 chr1 70799973 70800028 -126395404 - MIR3 SINE MIR -31 177 117 4 1125 854 316 32 11 chr1 70802924 70803209 -126392223 + B4A SINE B4 2 292 0 4 1125 31 26 0 0 chr1 70803855 70803893 -126391539 + AT_rich Low_complexity Low_complexity 1 38 0 4 1125 1214 27 7 0 chr1 70804031 70804177 -126391255 + B1_Mm SINE Alu 1 147 0 4 1125 218 300 0 48 chr1 70804523 70804586 -126390846 + PB1D10 SINE Alu 46 105 -12 4 1125 29 0 0 0 chr1 70804654 70804683 -126390749 + AT_rich Low_complexity Low_complexity 1 29 0 4 1125 473 0 18 0 chr1 70804852 70804909 -126390523 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 4 1125 273 119 0 0 chr1 70805230 70805272 -126390160 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1125 214 366 21 63 chr1 70805348 70805491 -126389941 - B4A SINE B4 -66 226 90 4 1125 547 312 18 24 chr1 70805663 70805827 -126389605 + RSINE1 SINE B4 1 163 -2 4 1125 345 47 0 0 chr1 70805834 70805877 -126389555 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1125 26 50 0 0 chr1 70805878 70805918 -126389514 + AT_rich Low_complexity Low_complexity 1 40 0 4 1125 339 290 60 0 chr1 70806076 70806163 -126389269 - PB1D10 SINE Alu -8 109 23 4 1125 294 29 0 0 chr1 70806163 70806198 -126389234 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1125 339 290 60 0 chr1 70806198 70806210 -126389222 - PB1D10 SINE Alu -95 22 5 4 1125 866 325 73 36 chr1 70806370 70806728 -126388704 - MTEa LTR MaLR -8 371 1 4 1125 21 0 0 0 chr1 70806816 70806837 -126388595 + AT_rich Low_complexity Low_complexity 1 21 0 4 1125 48 53 0 0 chr1 70806855 70806931 -126388501 + AT_rich Low_complexity Low_complexity 1 76 0 4 1125 467 264 53 59 chr1 70807280 70807528 -126387904 + Lx7 LINE L1 5679 5925 -1548 4 1125 527 137 32 0 chr1 70807857 70807981 -126387451 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 4 1125 1169 68 0 0 chr1 70809061 70809207 -126386225 + B1_Mus1 SINE Alu 2 147 -1 4 1125 557 72 0 12 chr1 70809207 70809291 -126386141 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 4 1125 266 315 33 53 chr1 70811803 70811954 -126383478 - MIR SINE MIR -27 235 88 4 1125 269 316 65 22 chr1 70812020 70812159 -126383273 + MER5A DNA MER1_type 12 156 -33 4 1125 456 19 0 0 chr1 70812281 70812334 -126383098 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1125 694 197 0 36 chr1 70812832 70812969 -126382463 + B1_Mur3 SINE Alu 4 135 -14 4 1125 273 29 0 0 chr1 70812973 70813007 -126382425 + (TAA)n Simple_repeat Simple_repeat 1 34 0 4 1125 233 328 122 47 chr1 70813169 70813422 -126382010 - L1ME3 LINE L1 -225 5937 5666 4 1125 585 254 73 1 chr1 70813435 70813584 -126381848 - ID_B1 SINE B4 -45 247 81 4 1125 509 325 47 16 chr1 70813585 70813907 -126381525 - L1ME3 LINE L1 -515 5664 5333 4 1125 330 211 109 9 chr1 70814096 70814206 -126381226 - L1MEc LINE L1 -984 5335 5215 4 1125 1245 34 0 0 chr1 70814499 70814646 -126380786 - B1_Mus2 SINE Alu 0 147 1 4 1125 235 225 38 0 chr1 70814715 70814795 -126380637 - L1MEc LINE L1 -1608 4711 4629 4 1125 2748 295 95 48 chr1 70814897 70816202 -126379230 - Lx8 LINE L1 -5 7468 6102 4 1125 22 56 0 0 chr1 70816428 70816464 -126378968 + AT_rich Low_complexity Low_complexity 1 36 0 4 1125 516 276 107 30 chr1 70816777 70817039 -126378393 - L1MEc LINE L1 -5552 848 567 4 1125 270 0 0 0 chr1 70817140 70817170 -126378262 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1125 573 124 0 0 chr1 70817170 70817266 -126378166 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1125 541 233 133 6 chr1 70817315 70817496 -126377936 - L1MEc LINE L1 -6088 312 109 4 1125 833 44 21 49 chr1 70820186 70820330 -126375102 - L1_Mus3 LINE L1 -3 6635 6496 4 1125 4907 71 0 0 chr1 70821200 70821834 -126373598 - L1Md_T LINE L1 0 6582 5949 4 1125 181 359 0 15 chr1 70822240 70822305 -126373127 - MIRb SINE MIR -32 236 173 4 1125 285 215 13 133 chr1 70822831 70822906 -126372526 + B4A SINE B4 226 291 -1 4 1125 360 43 0 0 chr1 70822923 70822969 -126372463 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1125 8121 41 4 1 chr1 70825147 70826206 -126369226 - L1Md_F2 LINE L1 -12 6570 5509 4 1125 437 331 34 17 chr1 70826566 70826744 -126368688 + MIRb SINE MIR 88 268 0 4 1125 285 29 0 0 chr1 70827451 70827485 -126367947 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1125 816 155 0 0 chr1 70828613 70828755 -126366677 + CT-rich Low_complexity Low_complexity 1 142 0 4 1125 240 314 33 8 chr1 70829370 70829492 -126365940 + GA-rich Low_complexity Low_complexity 5 129 0 4 1125 262 347 60 43 chr1 70829616 70829800 -126365632 - MIRb SINE MIR -70 198 12 4 1125 1587 261 87 25 chr1 70831002 70831435 -126363997 - MT2A LTR ERVL 0 533 74 4 1125 1063 110 0 0 chr1 70831435 70831590 -126363842 + B2_Mm2 SINE B2 1 155 -40 4 1125 249 33 0 0 chr1 70831590 70831620 -126363812 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1125 390 244 0 0 chr1 70831632 70831718 -126363714 - MT2A LTR ERVL -445 88 3 4 1125 647 299 138 38 chr1 70831914 70832255 -126363177 - MTEb LTR MaLR -4 375 1 4 1125 679 330 116 48 chr1 70832690 70833129 -126362303 - MLT1J LTR MaLR -7 505 37 5 1125 405 0 0 0 chr1 70833230 70833275 -126362157 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1125 735 205 75 203 chr1 70833282 70833588 -126361844 - MT2A LTR ERVL -266 267 1 5 1125 928 219 54 0 chr1 70833838 70834043 -126361389 - B3 SINE B2 0 216 1 5 1125 22 0 0 0 chr1 70834593 70834615 -126360817 + AT_rich Low_complexity Low_complexity 1 22 0 5 1125 387 0 0 0 chr1 70835041 70835084 -126360348 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1125 306 361 82 19 chr1 70836310 70836468 -126358964 - MLT1C LTR MaLR -243 224 57 5 1125 372 265 0 67 chr1 70836598 70836703 -126358729 - BC1_Mm scRNA scRNA -52 100 3 5 1125 568 158 8 16 chr1 70837091 70837213 -126358219 + Lx9 LINE L1 7522 7642 -2 5 1125 29 47 0 0 chr1 70837710 70837753 -126357679 + AT_rich Low_complexity Low_complexity 1 43 0 5 1125 481 149 32 24 chr1 70837882 70838006 -126357426 + (CATA)n Simple_repeat Simple_repeat 3 127 0 5 1125 640 242 129 21 chr1 70838200 70838386 -126357046 - B3 SINE B2 -10 206 1 5 1125 980 312 60 0 chr1 70839369 70839683 -126355749 + MLT1B LTR MaLR 38 370 -20 5 1125 458 291 120 46 chr1 70841289 70841530 -126353902 - MLT1J1 LTR MaLR -4 440 182 5 1125 23 0 0 0 chr1 70842323 70842346 -126353086 + AT_rich Low_complexity Low_complexity 1 23 0 5 1125 795 260 47 68 chr1 70842359 70842697 -126352735 + L1MB5 LINE L1 5844 6174 0 5 1125 811 260 36 22 chr1 70844617 70844841 -126350591 - MTEa LTR MaLR -150 229 3 5 1125 522 0 0 0 chr1 70845568 70845626 -126349806 + (GTTTG)n Simple_repeat Simple_repeat 1 58 0 5 1125 217 109 35 52 chr1 70846826 70846884 -126348548 + (TTG)n Simple_repeat Simple_repeat 2 58 0 5 1125 21 0 0 0 chr1 70847112 70847133 -126348299 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 237 338 12 0 chr1 70847472 70847552 -126347880 - ID4_ SINE ID -1 82 2 5 1125 482 207 265 18 chr1 70848285 70848447 -126346985 + B3A SINE B2 3 204 -12 5 1125 285 29 0 0 chr1 70848676 70848710 -126346722 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1125 1584 285 95 40 chr1 70848909 70849672 -126345760 - Lx9 LINE L1 -438 7206 6402 5 1125 232 211 18 0 chr1 70849777 70849834 -126345598 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1125 225 0 0 0 chr1 70849844 70849869 -126345563 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1125 412 270 0 187 chr1 70850578 70850733 -126344699 - ID_B1 SINE B4 -6 218 93 5 1125 285 261 28 48 chr1 70850927 70851072 -126344360 + (CATATA)n Simple_repeat Simple_repeat 3 144 0 5 1125 283 351 60 50 chr1 70851958 70852159 -126343273 - MLT1J LTR MaLR -4 508 306 5 1125 267 103 0 0 chr1 70853080 70853119 -126342313 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1125 225 0 0 0 chr1 70853155 70853180 -126342252 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1125 884 189 5 16 chr1 70854410 70854604 -126340828 + Lx5 LINE L1 6536 6727 -323 5 1125 2752 103 87 9 chr1 70854604 70855054 -126340378 - ORR1A2-int LTR MaLR -552 706 222 5 1125 383 94 0 0 chr1 70855052 70855105 -126340327 - ORR1A2-int LTR MaLR -1045 53 1 5 1125 2058 121 15 33 chr1 70855107 70855440 -126339992 - ORR1A2 LTR MaLR 0 327 1 5 1125 31 0 0 0 chr1 70855541 70855572 -126339860 + AT_rich Low_complexity Low_complexity 1 31 0 5 1125 519 231 47 47 chr1 70855583 70855733 -126339699 + ORSL DNA Tip100 124 273 -2 5 1125 1212 180 23 5 chr1 70856521 70856739 -126338693 + URR1A DNA MER1_type 1 222 -4 5 1125 462 36 0 0 chr1 70856809 70856865 -126338567 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1125 221 0 0 33 chr1 70857956 70857986 -126337446 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1125 231 130 18 36 chr1 70858329 70858385 -126337047 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1125 261 128 0 0 chr1 70858386 70858433 -126336999 - B1_Mur4 SINE Alu 0 150 104 5 1125 406 288 276 15 chr1 70859036 70859297 -126336135 + L1ME4a LINE L1 5521 5849 -275 5 1125 309 284 26 52 chr1 70859341 70859456 -126335976 + PB1D7 SINE Alu 1 112 -8 5 1125 769 274 26 19 chr1 70859784 70860055 -126335377 + B4A SINE B4 5 277 -15 5 1125 384 22 0 0 chr1 70861147 70861192 -126334240 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1125 396 0 0 0 chr1 70861194 70861238 -126334194 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1125 195 42 0 0 chr1 70861244 70861268 -126334164 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 5 1125 300 120 0 0 chr1 70861486 70861536 -126333896 + (CTG)n Simple_repeat Simple_repeat 1 50 0 5 1125 7894 13 0 1 chr1 70862371 70863305 -126332127 - L1Md_A LINE L1 -1 6581 5649 5 1125 1969 281 71 80 chr1 70863307 70863855 -126331577 - Lx9 LINE L1 -27 7617 7082 5 1125 210 71 0 0 chr1 70863855 70863883 -126331549 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1125 1969 281 71 80 chr1 70863883 70864448 -126330984 - Lx9 LINE L1 -563 7081 6514 5 1125 194 86 68 17 chr1 70864466 70864525 -126330907 + T-rich Low_complexity Low_complexity 5 66 0 5 1125 6211 103 28 23 chr1 70864539 70865500 -126329932 - Lx3B LINE L1 -1 6972 6007 5 1125 459 303 187 5 chr1 70866824 70867033 -126328399 + MLT1B LTR MaLR 5 251 -139 5 1125 435 19 0 0 chr1 70867195 70867247 -126328185 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1125 22 0 0 0 chr1 70869380 70869402 -126326030 + AT_rich Low_complexity Low_complexity 1 22 0 5 1125 198 103 0 0 chr1 70869581 70869610 -126325822 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 1125 180 0 0 0 chr1 70869757 70869777 -126325655 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1125 547 243 107 7 chr1 70870733 70870882 -126324550 + MER63A DNA AcHobo 46 209 -1 5 1125 2297 296 100 49 chr1 70871650 70871816 -126323616 - Lx8 LINE L1 -29 7444 7269 5 1125 623 187 361 0 chr1 70871816 70871982 -126323450 + URR1A DNA MER1_type 1 226 0 5 1125 2297 296 100 49 chr1 70871982 70873029 -126322403 - Lx8 LINE L1 -205 7268 6170 5 1125 222 208 0 0 chr1 70873030 70873083 -126322349 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1125 208 317 159 0 chr1 70873126 70873271 -126322161 + L2 LINE L2 1992 2159 -1260 5 1125 267 307 164 13 chr1 70873399 70873551 -126321881 - MER5B DNA MER1_type -3 175 1 5 1125 218 329 96 12 chr1 70873850 70873933 -126321499 + B4A SINE B4 4 93 -199 5 1125 2300 91 6 9 chr1 70873939 70874270 -126321162 + L1_Mus4 LINE L1 6300 6629 -7 5 1125 387 255 38 9 chr1 70874291 70874396 -126321036 + B3A SINE B2 98 203 -13 5 1125 414 261 35 48 chr1 70874499 70874644 -126320788 + MIR SINE MIR 94 236 -26 5 1125 201 121 0 0 chr1 70874669 70874702 -126320730 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 5 1125 185 293 17 0 chr1 70875028 70875086 -126320346 + MIRc SINE MIR 193 251 -17 5 1125 356 0 23 0 chr1 70875469 70875513 -126319919 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1125 544 342 29 6 chr1 70876048 70876363 -126319069 - L1M5 LINE L1 -318 5806 5485 5 1125 21 0 0 0 chr1 70877420 70877441 -126317991 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 283 184 13 26 chr1 70878311 70878389 -126317043 + CT-rich Low_complexity Low_complexity 4 80 0 5 1125 811 163 6 81 chr1 70878389 70878549 -126316883 - B1_Mus1 SINE Alu 0 148 1 5 1125 914 273 83 4 chr1 70878812 70879077 -126316355 + B4A SINE B4 6 291 -1 5 1125 363 105 0 0 chr1 70879097 70879154 -126316278 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1125 1858 41 0 76 chr1 70879587 70879850 -126315582 + L1_Mus2 LINE L1 6324 6566 0 5 1125 313 294 133 8 chr1 70879944 70880064 -126315368 - L2b LINE L2 -5 3370 3236 5 1125 357 82 0 0 chr1 70880401 70880450 -126314982 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 5 1125 253 318 0 0 chr1 70880549 70880612 -126314820 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1125 591 252 8 0 chr1 70880651 70880774 -126314658 - RSINE1 SINE B4 -37 128 5 5 1125 26 0 0 0 chr1 70881333 70881359 -126314073 + AT_rich Low_complexity Low_complexity 1 26 0 5 1125 821 196 201 0 chr1 70882730 70882909 -126312523 + B3 SINE B2 2 216 0 5 1125 408 316 134 5 chr1 70882938 70883132 -126312300 - L3 LINE CR1 -195 4294 4076 5 1125 843 156 226 0 chr1 70884163 70884279 -126311153 + Lx9 LINE L1 7340 7476 -168 5 1125 393 22 0 0 chr1 70884279 70884325 -126311107 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1125 843 156 226 0 chr1 70884325 70884451 -126310981 + Lx9 LINE L1 7477 7636 -8 5 1125 358 291 31 0 chr1 70886085 70886212 -126309220 + B1F SINE Alu 1 131 -18 5 1125 35 24 0 0 chr1 70886223 70886265 -126309167 + AT_rich Low_complexity Low_complexity 1 42 0 5 1125 208 95 0 45 chr1 70886929 70886973 -126308459 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 5 1125 243 0 0 0 chr1 70887428 70887455 -126307977 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1125 459 0 0 0 chr1 70888385 70888436 -126306996 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1125 217 155 0 79 chr1 70888721 70888784 -126306648 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 5 1125 645 324 45 45 chr1 70889871 70890164 -126305268 + B4A SINE B4 2 276 -16 5 1125 892 216 8 27 chr1 70891070 70891327 -126304105 + RMER17C LTR ERVK 1 252 -158 5 1125 1198 165 18 15 chr1 70891323 70891649 -126303783 + RMER17C LTR ERVK 84 410 0 5 1125 214 317 143 24 chr1 70892058 70892142 -126303290 + L2a LINE L2 3317 3410 -16 5 1125 1918 180 32 16 chr1 70892572 70892944 -126302488 - ORR1C1 LTR MaLR 0 378 1 5 1125 460 258 72 17 chr1 70893384 70893565 -126301867 + L1MA7 LINE L1 5833 6023 -268 5 1125 611 314 77 16 chr1 70893569 70893763 -126301669 + B4A SINE B4 2 207 -85 5 1125 294 50 0 0 chr1 70893836 70893876 -126301556 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1125 631 324 87 58 chr1 70896415 70896690 -126298742 + B4A SINE B4 10 292 0 6 1125 223 347 80 20 chr1 70896765 70896865 -126298567 - MIRb SINE MIR -57 211 106 6 1125 374 217 7 7 chr1 70897464 70897617 -126297815 + GA-rich Low_complexity Low_complexity 1 152 0 6 1125 202 68 68 0 chr1 70899407 70899451 -126295981 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1125 247 269 159 28 chr1 70899498 70899605 -126295827 - PB1 SINE Alu -2 125 5 6 1125 198 373 34 34 chr1 70901121 70901268 -126294164 - MIR SINE MIR -69 193 47 6 1125 294 140 0 39 chr1 70901428 70901480 -126293952 + MTD LTR MaLR 1 50 -371 6 1125 854 194 106 15 chr1 70901460 70901659 -126293773 + MTD LTR MaLR 203 419 0 6 1125 399 301 70 17 chr1 70901903 70902018 -126293414 + B1F SINE Alu 27 147 -2 6 1125 275 322 0 84 chr1 70902224 70902390 -126293042 + RSINE1 SINE B4 3 154 -11 6 1125 225 0 0 0 chr1 70902397 70902422 -126293010 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1125 2702 174 8 60 chr1 70904956 70905458 -126289974 - RMER15 LTR ERVL 0 575 100 6 1125 295 357 172 6 chr1 70905484 70905653 -126289779 - MLT1D LTR MaLR -125 380 184 6 1125 780 172 270 0 chr1 70907883 70908057 -126287375 + URR1B DNA MER1_type 5 225 0 6 1125 347 211 30 40 chr1 70908075 70908174 -126287258 - MER5A1 DNA MER1_type -43 123 26 6 1125 387 0 0 0 chr1 70908404 70908447 -126286985 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1125 183 80 0 0 chr1 70909151 70909176 -126286256 + (A)n Simple_repeat Simple_repeat 1 25 0 6 140 232 328 91 65 chr1 70909895 70910081 -126285351 - MIR SINE MIR -1 261 71 6 1126 252 77 0 0 chr1 70911795 70911834 -126283598 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1126 1148 62 7 0 chr1 70911834 70911972 -126283460 - B1_Mus2 SINE Alu -7 140 2 6 1126 304 305 83 17 chr1 70912959 70913079 -126282353 - MER5A DNA MER1_type 0 189 62 6 1126 486 0 0 0 chr1 70913279 70913333 -126282099 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1126 610 251 172 6 chr1 70913412 70913592 -126281840 - ID_B1 SINE B4 -14 210 1 6 1126 339 188 82 99 chr1 70913597 70913768 -126281664 - Charlie5 DNA MER1_type -30 2594 2427 6 1126 29 0 0 0 chr1 70914950 70914979 -126280453 + AT_rich Low_complexity Low_complexity 1 29 0 6 1126 260 329 52 58 chr1 70915049 70915223 -126280209 - MIR SINE MIR 0 262 90 6 1126 288 225 93 36 chr1 70916913 70917046 -126278386 + MIR SINE MIR 59 215 -53 6 1126 432 246 15 9 chr1 70917060 70917169 -126278263 + PB1D10 SINE Alu 1 108 -9 6 1126 477 0 0 0 chr1 70917171 70917224 -126278208 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 6 1126 1434 45 0 0 chr1 70917230 70917408 -126278024 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 6 1126 468 51 0 0 chr1 70918569 70918628 -126276804 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1126 32315 4 0 0 chr1 70919424 70923931 -126271501 - L1Md_A LINE L1 0 6582 2076 6 1126 214 381 0 0 chr1 70924824 70924908 -126270524 + MIRb SINE MIR 51 134 -134 6 1126 939 98 0 67 chr1 70925254 70925418 -126270014 - L1Md_F2 LINE L1 -1 6581 6429 6 1126 369 0 0 0 chr1 70926223 70926264 -126269168 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1126 21 0 0 0 chr1 70927483 70927504 -126267928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1126 321 47 0 0 chr1 70927525 70927568 -126267864 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1126 324 0 0 0 chr1 70927600 70927636 -126267796 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1126 800 20 10 0 chr1 70927782 70927880 -126267552 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 6 1126 612 241 0 0 chr1 70928244 70928418 -126267014 + CT-rich Low_complexity Low_complexity 3 176 0 6 1126 300 344 49 79 chr1 70930293 70930457 -126264975 - MER20 DNA MER1_type -54 165 7 6 1126 32 0 0 0 chr1 70931066 70931098 -126264334 + AT_rich Low_complexity Low_complexity 1 32 0 6 1126 29 28 0 0 chr1 70931920 70931956 -126263476 + AT_rich Low_complexity Low_complexity 1 36 0 6 1126 198 347 65 32 chr1 70932177 70932332 -126263100 - MIRb SINE MIR -6 262 103 6 1126 422 314 107 0 chr1 70933518 70933677 -126261755 + B4A SINE B4 1 176 -116 6 1126 181 312 76 51 chr1 70934153 70934271 -126261161 - MIR SINE MIR -32 230 110 6 1126 272 83 0 20 chr1 70935472 70935521 -126259911 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1126 228 224 0 0 chr1 70936997 70937064 -126258368 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1126 501 314 41 35 chr1 70938578 70938868 -126256564 + B4A SINE B4 1 292 0 6 1126 301 220 17 0 chr1 70938891 70938950 -126256482 + HAL1-3A_ME LINE L1 1975 2034 -824 6 1126 840 287 55 43 chr1 70939247 70939717 -126255715 - L1MB1 LINE L1 -1 6167 5692 6 1126 351 0 0 0 chr1 70939748 70939787 -126255645 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1126 1213 46 26 0 chr1 70939790 70939943 -126255489 - B2_Mm1t SINE B2 -36 157 1 6 1126 354 382 29 25 chr1 70941791 70941995 -126253437 - B4A SINE B4 -86 206 2 6 1126 209 335 174 57 chr1 70942503 70942854 -126252578 - L2c LINE L2 -45 3342 2951 6 1126 740 309 87 47 chr1 70944493 70944815 -126250617 + MER2 DNA MER2_type 10 344 -1 6 1126 379 326 75 85 chr1 70945477 70945772 -126249660 + L2c LINE L2 3095 3386 -1 6 1126 246 32 0 0 chr1 70945962 70945993 -126249439 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1126 525 176 98 8 chr1 70946009 70946141 -126249291 - Lx3B LINE L1 -6 6967 6824 6 1126 1795 190 22 3 chr1 70946146 70946504 -126248928 - ORR1B2 LTR MaLR -2 365 1 6 1126 637 243 21 14 chr1 70946945 70947087 -126248345 - B1F2 SINE Alu 0 149 7 6 1126 240 287 109 69 chr1 70948798 70948899 -126246533 + Charlie1a DNA MER1_type 63 167 -1288 6 1126 557 304 109 18 chr1 70948927 70949212 -126246220 - MER67B LTR ERV1 0 661 351 6 1126 378 276 76 17 chr1 70949318 70949436 -126245996 - MER67B LTR ERV1 -527 134 10 6 1126 1925 259 53 37 chr1 70949507 70950124 -126245308 + Charlie1a DNA MER1_type 257 883 -572 6 1126 1766 209 118 59 chr1 70950124 70950519 -126244913 + Lx9 LINE L1 7010 7419 -225 6 1126 342 45 0 0 chr1 70950519 70950563 -126244869 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1126 1766 209 118 59 chr1 70950563 70950649 -126244783 + Lx9 LINE L1 7420 7528 -116 6 1126 252 0 0 0 chr1 70950649 70950677 -126244755 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1126 1766 209 118 59 chr1 70950677 70950757 -126244675 + Lx9 LINE L1 7529 7608 -36 6 1126 710 10 20 20 chr1 70950757 70950858 -126244574 + (GAGAA)n Simple_repeat Simple_repeat 5 105 0 6 1126 1766 209 118 59 chr1 70950858 70950889 -126244543 + Lx9 LINE L1 7609 7639 -5 6 1126 239 259 24 36 chr1 70950910 70950994 -126244438 + Charlie1a DNA MER1_type 869 951 -504 6 1126 541 301 107 0 chr1 70951164 70951426 -126244006 + B4A SINE B4 1 290 -2 6 1126 447 298 39 46 chr1 70951737 70951867 -126243565 + RSINE1 SINE B4 37 165 0 6 1126 251 233 35 110 chr1 70951755 70951900 -126243532 + B2_Mm2 SINE B2 54 187 -8 6 1126 342 157 0 0 chr1 70952524 70952607 -126242825 + CT-rich Low_complexity Low_complexity 2 84 0 6 1126 760 299 20 0 chr1 70952616 70952817 -126242615 - B4A SINE B4 -86 206 2 6 1126 231 133 0 0 chr1 70955084 70955129 -126240303 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1126 264 260 12 94 chr1 70955205 70955290 -126240142 + MER63A DNA AcHobo 38 115 -95 6 1126 306 275 13 0 chr1 70955296 70955381 -126240051 + MER63A DNA AcHobo 90 164 -46 6 1126 962 317 28 7 chr1 70955462 70955748 -126239684 + B4A SINE B4 1 292 0 6 1126 332 347 103 35 chr1 70955823 70956026 -126239406 + L1M5 LINE L1 5477 5693 -547 6 1126 1017 205 127 46 chr1 70956051 70956358 -126239074 - IAPEY3_LTR LTR ERVK 0 332 1 6 1126 203 259 33 11 chr1 70956593 70956683 -126238749 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1126 378 0 0 0 chr1 70957751 70957793 -126237639 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1126 351 0 0 0 chr1 70957793 70957831 -126237601 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1126 274 277 137 10 chr1 70959204 70959306 -126236126 - MLT1C LTR MaLR -71 396 282 6 1126 21 0 0 0 chr1 70960355 70960376 -126235056 + AT_rich Low_complexity Low_complexity 1 21 0 6 1126 4744 67 19 6 chr1 70960957 70961599 -126233833 + L1_Mus3 LINE L1 5989 6638 0 6 1126 336 295 147 0 chr1 70961870 70961965 -126233467 + PB1D10 SINE Alu 6 114 -3 6 1126 849 286 120 27 chr1 70962005 70962264 -126233168 + B4 SINE B4 10 292 0 6 1126 261 57 0 0 chr1 70962282 70962317 -126233115 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1126 1042 82 0 88 chr1 70963899 70964059 -126231373 + B1_Mm SINE Alu 2 147 0 6 1126 340 257 0 10 chr1 70964863 70964965 -126230467 + (CAGA)n Simple_repeat Simple_repeat 2 102 0 6 1126 1495 214 183 44 chr1 70965199 70965697 -126229735 - RMER2 LTR ERV1 0 567 1 6 1126 1041 64 0 41 chr1 70965809 70965955 -126229477 + B1_Mus2 SINE Alu 6 145 -2 6 1126 210 143 0 0 chr1 70965961 70965996 -126229436 + (GGA)n Simple_repeat Simple_repeat 3 37 0 6 1126 1111 112 6 6 chr1 70965996 70966176 -126229256 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1126 390 21 0 0 chr1 70966226 70966273 -126229159 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1126 1136 225 77 37 chr1 70966373 70966696 -126228736 + Lx3C LINE L1 6639 6974 -2 6 1126 272 312 86 12 chr1 70967090 70967171 -126228261 - Arthur1B DNA Tip100 -1135 90 4 6 1126 914 279 97 40 chr1 70967835 70968443 -126226989 + L1MA7 LINE L1 5649 6291 0 6 1126 232 325 99 8 chr1 70968866 70968987 -126226445 - L2c LINE L2 -264 3123 2992 6 1126 4344 67 2 7 chr1 70969141 70969711 -126225721 + L1Md_F2 LINE L1 6003 6569 -13 6 1126 181 395 9 17 chr1 70970106 70970222 -126225210 + L2a LINE L2 3312 3426 0 6 1126 240 143 0 0 chr1 70970488 70970530 -126224902 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1126 923 242 23 31 chr1 70971048 70971304 -126224128 + ORR1D1 LTR MaLR 1 254 -120 6 1126 227 40 0 145 chr1 70971307 70971424 -126224008 + (TCCTG)n Simple_repeat Simple_repeat 1 100 0 7 1126 527 228 68 41 chr1 70971426 70971466 -126223966 + ORR1C2 LTR MaLR 142 180 -187 7 1126 873 128 0 0 chr1 70971466 70971646 -126223786 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1126 782 167 79 4 chr1 70971646 70971825 -126223607 + ORR1C2 LTR MaLR 181 384 0 7 1126 350 359 14 0 chr1 70972055 70972182 -126223250 + MIR SINE MIR 14 146 -122 7 1126 497 354 110 31 chr1 70972182 70972436 -126222996 + B4A SINE B4 1 274 -18 7 1126 624 253 93 0 chr1 70972544 70972694 -126222738 + RSINE1 SINE B4 2 165 0 7 1126 293 259 12 0 chr1 70972696 70972777 -126222655 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1126 415 276 129 47 chr1 70972845 70973016 -126222416 + Lx8 LINE L1 6968 7152 -321 7 1126 5409 69 26 0 chr1 70973235 70973931 -126221501 - Lx3_Mus LINE L1 0 7009 6296 7 1126 264 122 0 0 chr1 70976193 70976234 -126219198 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1126 356 312 54 0 chr1 70976822 70976934 -126218498 + RMER15 LTR ERVL 371 488 -87 7 1126 351 297 51 71 chr1 70976937 70977133 -126218299 - B2_Mm2 SINE B2 -1 194 3 7 1126 435 372 75 52 chr1 70977234 70977674 -126217758 + RMER15-int LTR ERVL 70 519 -4480 7 1126 1474 280 188 5 chr1 70977722 70978309 -126217123 + RMER15-int LTR ERVL 686 1380 -3619 7 1126 552 15 0 0 chr1 70978505 70978570 -126216862 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 7 1126 1095 73 0 0 chr1 70978570 70978706 -126216726 - B1_Mus2 SINE Alu -10 137 2 7 1126 17232 150 11 100 chr1 70980480 70982660 -126212772 + L1_Mus1 LINE L1 1831 4034 -2533 7 1126 2026 119 259 27 chr1 70982660 70983107 -126212325 - RLTR6_Mm LTR ERV1 -67 587 37 7 1126 259 228 200 38 chr1 70983109 70983214 -126212218 - RLTR6_Mm LTR ERV1 -532 122 1 7 1126 17232 150 11 100 chr1 70983214 70985718 -126209714 + L1_Mus1 LINE L1 4035 6567 0 7 1126 609 372 84 54 chr1 70986106 70986606 -126208826 - MLT1G1 LTR MaLR -1 578 64 7 1126 495 0 0 0 chr1 70987027 70987082 -126208350 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1126 429 20 0 0 chr1 70987868 70987918 -126207514 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1126 24 67 0 0 chr1 70989295 70989340 -126206092 + AT_rich Low_complexity Low_complexity 1 45 0 7 1126 236 261 79 35 chr1 70989430 70989529 -126205903 - MIR SINE MIR -78 130 21 7 1126 282 203 13 115 chr1 70989754 70989776 -126205656 + B4A SINE B4 74 87 -205 7 1126 376 264 64 0 chr1 70989776 70989886 -126205546 + PB1D7 SINE Alu 2 118 -2 7 1126 597 28 0 0 chr1 70989897 70989968 -126205464 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 7 1126 7478 2 0 0 chr1 70990010 70990832 -126204600 - L1Md_A LINE L1 0 6582 5761 7 1126 25 31 0 0 chr1 70991623 70991655 -126203777 + AT_rich Low_complexity Low_complexity 1 32 0 7 1126 189 292 0 53 chr1 70991737 70991813 -126203619 - L2 LINE L2 -1337 2082 2011 7 1126 3465 196 43 12 chr1 70992039 70992171 -126203261 - RMER1A Other Other -5 1025 882 7 1126 240 35 0 0 chr1 70992171 70992200 -126203232 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1126 3465 211 51 36 chr1 70992200 70992968 -126202464 - RMER1A Other Other -149 881 240 7 1126 243 0 0 0 chr1 70993091 70993118 -126202314 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1126 21 0 0 0 chr1 70993673 70993694 -126201738 + AT_rich Low_complexity Low_complexity 1 21 0 7 1126 402 324 64 7 chr1 70993700 70993840 -126201592 - RSINE1 SINE B4 -6 159 12 7 1126 1140 82 0 0 chr1 70993926 70994064 -126201368 + B1_Mus1 SINE Alu 1 138 -10 7 1126 299 23 0 44 chr1 70994064 70994109 -126201323 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 1126 1381 40 0 0 chr1 70994304 70994479 -126200953 - L1_Mus1 LINE L1 -560 6007 5833 7 1126 4400 63 0 4 chr1 70994479 70995032 -126200400 + L1_Mus1 LINE L1 6017 6567 0 7 1126 583 276 60 24 chr1 70995463 70995630 -126199802 + B4A SINE B4 4 176 -116 7 1126 549 0 0 0 chr1 70995631 70995692 -126199740 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1126 1416 22 0 16 chr1 70995692 70995875 -126199557 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1126 309 51 0 0 chr1 70995892 70995931 -126199501 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 7 1126 216 0 0 0 chr1 70995934 70995958 -126199474 + (GGGAA)n Simple_repeat Simple_repeat 1 24 0 7 1126 406 262 9 36 chr1 70995958 70996069 -126199363 + B4A SINE B4 182 289 -3 7 1126 594 308 103 11 chr1 70996154 70996328 -126199104 - B3A SINE B2 0 198 9 7 1126 339 308 75 0 chr1 70996498 70996644 -126198788 + MIR SINE MIR 85 241 -21 7 1126 612 138 0 0 chr1 70997066 70997182 -126198250 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 1126 477 352 61 34 chr1 70997183 70997330 -126198102 - RSINE1 SINE B4 0 165 15 7 1126 5974 55 7 3 chr1 70997377 70998122 -126197310 + L1Md_F2 LINE L1 5818 6565 -17 7 1126 24 24 0 24 chr1 70998122 70998151 -126197281 + AT_rich Low_complexity Low_complexity 1 29 0 7 1126 1333 77 21 16 chr1 70998151 70998337 -126197095 + B2_Mm1a SINE B2 2 188 -5 7 1126 24 24 0 24 chr1 70998337 70998349 -126197083 + AT_rich Low_complexity Low_complexity 1 12 0 7 1126 543 289 108 34 chr1 70998415 70998619 -126196813 - B3A SINE B2 0 216 3 7 1126 778 295 44 0 chr1 70998734 70998961 -126196471 + MER99 DNA hAT? 205 441 -390 7 1126 3208 43 0 0 chr1 70999235 70999626 -126195806 - L1Md_T LINE L1 0 6582 6192 7 1126 3102 16 0 0 chr1 70999626 71000000 -126195432 + L1Md_T LINE L1 5609 5982 -600 7 1126 1489 52 0 0 chr1 71000000 71000191 -126195241 + L1Md_T LINE L1 5983 6173 -409 1 1126 397 284 0 29 chr1 71000191 71000296 -126195136 + MER99 DNA hAT? 730 831 0 2 1126 1061 280 17 100 chr1 71000552 71000615 -126194817 - MTEa LTR MaLR -4 375 327 3 1126 1461 0 6 22 chr1 71000615 71000798 -126194634 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1126 1061 280 17 100 chr1 71000798 71000964 -126194468 - MTEa LTR MaLR -53 326 185 3 1126 3039 50 39 0 chr1 71000964 71001345 -126194087 + MTA_Mm LTR MaLR 1 396 0 5 1126 1061 280 17 100 chr1 71001345 71001523 -126193909 - MTEa LTR MaLR -195 184 2 3 1126 1191 230 45 6 chr1 71001894 71002226 -126193206 - Lx9 LINE L1 0 7644 7300 6 1126 1193 223 21 54 chr1 71002235 71002567 -126192865 + Lx9 LINE L1 6950 7270 -374 6 1126 1217 271 32 30 chr1 71003835 71004238 -126191194 + Lx7 LINE L1 6897 7300 -396 7 1126 23 33 0 0 chr1 71004391 71004421 -126191011 + AT_rich Low_complexity Low_complexity 1 30 0 8 1126 1329 69 40 0 chr1 71004520 71004693 -126190739 + B2_Mm2 SINE B2 2 181 -14 9 1126 351 232 72 0 chr1 71005557 71005671 -126189761 + L1MA9 LINE L1 5765 5904 -387 1 1126 347 228 33 0 chr1 71005767 71005859 -126189573 + L1MA9 LINE L1 6068 6162 -6 1 1126 266 203 0 30 chr1 71006173 71006239 -126189193 + Lx8 LINE L1 7408 7471 -2 1 1126 28 0 0 0 chr1 71006241 71006269 -126189163 + AT_rich Low_complexity Low_complexity 1 28 0 1 1126 184 353 110 0 chr1 71006992 71007128 -126188304 - L2 LINE L2 -742 2677 2527 1 1126 243 0 0 0 chr1 71008825 71008852 -126186580 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1126 180 317 66 80 chr1 71010706 71010857 -126184575 - MIR SINE MIR -80 182 34 1 1126 2924 191 24 2 chr1 71012138 71012677 -126182755 + Lx5 LINE L1 6487 7037 -13 1 1126 342 0 0 0 chr1 71012681 71012719 -126182713 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1126 3495 42 0 42 chr1 71012841 71013292 -126182140 - L1_Mus2 LINE L1 0 6566 6135 1 1126 454 285 69 7 chr1 71013440 71013585 -126181847 + MLT1A0 LTR MaLR 212 365 0 1 1126 26 0 0 0 chr1 71013702 71013728 -126181704 + AT_rich Low_complexity Low_complexity 1 26 0 2 1126 276 299 21 75 chr1 71013893 71013987 -126181445 + PB1D10 SINE Alu 6 94 -23 2 1126 307 218 190 13 chr1 71014040 71014119 -126181313 + ID_B1 SINE B4 121 213 -11 2 1126 209 345 11 22 chr1 71014426 71014515 -126180917 + L2a LINE L2 3336 3423 -3 2 1126 1096 283 50 20 chr1 71015134 71015825 -126179607 - L1M4 LINE L1 -403 5781 5069 2 1126 23 68 0 0 chr1 71016012 71016056 -126179376 + AT_rich Low_complexity Low_complexity 1 44 0 2 1126 193 291 0 18 chr1 71016129 71016185 -126179247 + L3 LINE CR1 4223 4277 -212 2 1126 1085 203 185 58 chr1 71016698 71016851 -126178581 + ORR1D1 LTR MaLR 1 173 -201 2 1126 576 0 0 0 chr1 71016851 71016915 -126178517 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 2 1126 1085 203 185 58 chr1 71016915 71017091 -126178341 + ORR1D1 LTR MaLR 174 372 -2 2 1126 1167 61 0 7 chr1 71018146 71018294 -126177138 + B1_Mm SINE Alu 1 147 0 2 1126 22 56 0 0 chr1 71018294 71018330 -126177102 + AT_rich Low_complexity Low_complexity 1 36 0 3 1126 1681 128 32 11 chr1 71018623 71018908 -126176524 + L1_Mus3 LINE L1 6348 6638 0 3 1126 258 179 0 0 chr1 71018979 71019035 -126176397 + CT-rich Low_complexity Low_complexity 1 56 0 3 1126 995 94 12 17 chr1 71019035 71019208 -126176224 + (TTCC)n Simple_repeat Simple_repeat 4 175 0 3 1126 244 261 152 43 chr1 71019215 71019307 -126176125 - PB1D7 SINE Alu -6 114 13 3 1126 251 350 172 18 chr1 71019563 71019848 -126175584 - LTR86B1 LTR ERVL -126 367 39 3 1126 931 241 18 0 chr1 71020702 71020930 -126174502 + Lx9 LINE L1 7234 7465 -179 3 1126 768 99 0 0 chr1 71020931 71021042 -126174390 + (GA)n Simple_repeat Simple_repeat 1 111 0 3 1126 302 211 22 0 chr1 71021050 71021140 -126174292 + Lx9 LINE L1 7534 7625 -19 3 1126 4884 34 15 0 chr1 71021144 71021733 -126173699 - L1Md_F3 LINE L1 0 6584 5987 3 1126 1182 134 119 0 chr1 71022668 71022870 -126172562 - URR1A DNA MER1_type 0 226 1 3 1126 578 279 42 47 chr1 71022976 71023168 -126172264 + MER20 DNA MER1_type 8 198 -21 4 1126 24 53 0 0 chr1 71023736 71023774 -126171658 + AT_rich Low_complexity Low_complexity 1 38 0 4 1126 2599 208 56 19 chr1 71023788 71024179 -126171253 - RMER19C LTR ERVK 0 611 223 4 1126 891 73 0 0 chr1 71024179 71024303 -126171129 + (TC)n Simple_repeat Simple_repeat 2 125 0 4 1126 2599 208 56 19 chr1 71024303 71024500 -126170932 - RMER19C LTR ERVK -389 222 2 4 1126 21 82 0 0 chr1 71024659 71024708 -126170724 + AT_rich Low_complexity Low_complexity 1 49 0 4 1126 311 330 53 43 chr1 71026061 71026248 -126169184 + L1ME4a LINE L1 5675 5863 -261 4 1126 999 242 21 0 chr1 71026401 71026595 -126168837 + B3 SINE B2 14 211 -5 4 1126 39453 5 0 1 chr1 71026660 71033445 -126161987 - L1Md_A LINE L1 0 6582 1 4 1126 269 336 16 16 chr1 71033668 71033792 -126161640 + PB1 SINE Alu 1 124 -3 4 1126 5082 76 14 6 chr1 71033960 71034650 -126160782 - L1_Mus2 LINE L1 0 6566 5871 4 1126 3681 96 2 0 chr1 71034653 71035176 -126160256 + L1_Mus2 LINE L1 5357 5880 -3 4 1126 526 138 46 0 chr1 71035784 71035862 -126159570 + B1_Mus2 SINE Alu 57 138 -9 5 1126 234 0 0 0 chr1 71035862 71035888 -126159544 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1126 275 78 30 30 chr1 71035973 71036039 -126159393 + (CAAAAA)n Simple_repeat Simple_repeat 3 68 0 5 1126 699 75 0 0 chr1 71036587 71036681 -126158751 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 5 1126 543 212 307 3 chr1 71036682 71036843 -126158589 + B3 SINE B2 27 216 0 5 1126 822 229 23 23 chr1 71037350 71037565 -126157867 + B3 SINE B2 2 216 0 5 1126 290 302 33 13 chr1 71037748 71037899 -126157533 + Arthur1 DNA Tip100 3744 3897 -50 5 1126 339 229 26 71 chr1 71037906 71038019 -126157413 - HAL1-3A_ME LINE L1 -831 2027 1920 5 1126 216 149 0 0 chr1 71038037 71038084 -126157348 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1126 652 239 36 0 chr1 71038154 71038292 -126157140 - MTEa LTR MaLR -236 143 1 5 1126 6658 78 76 1 chr1 71038446 71039421 -126156011 + L1_Mus3 LINE L1 5588 6635 -3 6 1126 231 36 0 0 chr1 71039714 71039742 -126155690 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 6 1126 635 225 0 0 chr1 71039744 71039855 -126155577 - B1_Mur4 SINE Alu -39 111 1 6 1127 32 26 0 0 chr1 71041287 71041326 -126154106 + AT_rich Low_complexity Low_complexity 1 39 0 6 1127 205 108 85 38 chr1 71041333 71041439 -126153993 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 6 1127 276 83 32 32 chr1 71042250 71042312 -126153120 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 6 1127 357 43 0 0 chr1 71042539 71042586 -126152846 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1127 337 325 93 23 chr1 71042844 71042973 -126152459 + RSINE1 SINE B4 15 152 -13 6 1127 303 337 20 87 chr1 71043386 71043581 -126151851 + LTR16A1 LTR ERVL 275 456 0 6 1127 372 138 0 0 chr1 71043735 71043800 -126151632 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1127 526 278 31 68 chr1 71045438 71045600 -126149832 - MLT1D LTR MaLR -349 156 1 7 1127 341 324 88 128 chr1 71045826 71046145 -126149287 - MER102a DNA MER1_type -24 306 1 7 1127 372 340 94 36 chr1 71046511 71046703 -126148729 + MLT1L LTR MaLR 69 271 -339 7 1127 253 350 50 10 chr1 71046722 71046823 -126148609 + MLT1L LTR MaLR 345 449 -161 7 1127 331 273 66 29 chr1 71047206 71047342 -126148090 - MTEa LTR MaLR -3 376 236 7 1127 744 304 9 47 chr1 71047871 71048082 -126147350 + B3 SINE B2 1 203 -13 7 1127 26 0 0 0 chr1 71048111 71048137 -126147295 + AT_rich Low_complexity Low_complexity 1 26 0 7 1127 1536 168 35 114 chr1 71048512 71048908 -126146524 - ORR1C1 LTR MaLR -13 365 1 7 1127 24 32 0 0 chr1 71049367 71049398 -126146034 + AT_rich Low_complexity Low_complexity 1 31 0 7 1127 681 274 43 26 chr1 71049813 71050045 -126145387 + Tigger10 DNA Tigger 1003 1238 -605 7 1127 558 0 0 0 chr1 71050322 71050384 -126145048 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1127 752 213 147 4 chr1 71050399 71050658 -126144774 + L1MB2 LINE L1 5869 6164 -7 8 1127 338 300 127 36 chr1 71051297 71051463 -126143969 - L1MB5 LINE L1 -23 6161 5981 8 1127 1247 279 104 14 chr1 71051493 71052358 -126143074 - L1MB5 LINE L1 -286 5888 4948 8 1127 219 36 0 0 chr1 71052358 71052386 -126143046 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1127 36 19 0 19 chr1 71052390 71052424 -126143008 + AT_rich Low_complexity Low_complexity 1 34 0 8 1127 304 82 33 0 chr1 71052424 71052485 -126142947 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1127 36 19 0 19 chr1 71052485 71052504 -126142928 + AT_rich Low_complexity Low_complexity 1 19 0 8 1127 337 255 19 13 chr1 71052750 71052850 -126142582 - B1_Mur4 SINE Alu -7 113 9 8 1127 239 298 106 33 chr1 71052854 71053402 -126142030 - L1MB5 LINE L1 -2684 3462 2875 8 1127 1554 140 64 156 chr1 71054282 71054705 -126140727 + ORR1C2 LTR MaLR 1 384 0 8 1127 188 351 78 43 chr1 71054870 71054986 -126140446 + MIR3 SINE MIR 40 159 -49 8 1127 318 88 44 0 chr1 71055172 71055240 -126140192 + (TA)n Simple_repeat Simple_repeat 1 71 0 8 1127 22 0 0 0 chr1 71055303 71055325 -126140107 + AT_rich Low_complexity Low_complexity 1 22 0 9 1127 288 0 0 0 chr1 71055842 71055874 -126139558 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1127 527 286 54 72 chr1 71056749 71056821 -126138611 - RSINE1 SINE B4 -2 163 93 9 1127 1840 162 237 47 chr1 71056821 71057398 -126138034 - RMER6C LTR ERVK -3 687 1 9 1127 527 286 54 72 chr1 71057398 71057491 -126137941 - RSINE1 SINE B4 -73 92 1 9 1127 349 276 0 79 chr1 71057681 71057795 -126137637 + MLT1B LTR MaLR 1 105 -285 9 1127 317 171 141 14 chr1 71057858 71057929 -126137503 + MLT1B LTR MaLR 107 186 -204 9 1127 243 0 0 0 chr1 71058093 71058120 -126137312 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1127 616 229 139 14 chr1 71058164 71058372 -126137060 + MLT1B LTR MaLR 155 388 -2 9 1127 244 338 74 1 chr1 71058788 71058958 -126136474 - MLT1L LTR MaLR -1 609 334 9 1127 280 335 108 22 chr1 71059622 71059889 -126135543 + MLT1G3 LTR MaLR 174 418 -71 9 1127 817 133 18 42 chr1 71059945 71060110 -126135322 - Lx3B LINE L1 -52 6921 6761 9 1127 180 148 0 0 chr1 71060651 71060678 -126134754 + L4 LINE RTE 1811 1837 -192 9 1127 1749 142 62 37 chr1 71060888 71061209 -126134223 - ORR1A4 LTR MaLR 0 329 1 1 1127 22 35 0 0 chr1 71061510 71061539 -126133893 + AT_rich Low_complexity Low_complexity 1 29 0 1 1127 859 283 22 4 chr1 71062132 71062351 -126133081 + B4A SINE B4 3 225 -67 1 1127 567 266 0 106 chr1 71062351 71062511 -126132921 + B1_Mur1 SINE Alu 2 144 -5 1 1127 216 0 0 0 chr1 71063804 71063828 -126131604 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1127 355 223 170 0 chr1 71063882 71063976 -126131456 - PB1D10 SINE Alu -7 110 1 1 1127 732 291 8 76 chr1 71064166 71064404 -126131028 - B4 SINE B4 -69 223 2 1 1127 459 0 0 0 chr1 71064630 71064681 -126130751 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1127 1657 189 52 42 chr1 71065573 71065955 -126129477 + ORR1B1 LTR MaLR 1 386 -8 1 1127 2228 111 21 69 chr1 71066002 71066379 -126129053 - RLTR10D LTR ERVK 0 359 1 1 1127 219 306 84 12 chr1 71066789 71066957 -126128475 + MIR SINE MIR 14 196 -72 1 1127 231 36 0 0 chr1 71067974 71068002 -126127430 + (TCC)n Simple_repeat Simple_repeat 3 30 0 1 1127 207 0 0 0 chr1 71068413 71068436 -126126996 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1127 376 274 300 21 chr1 71068941 71069131 -126126301 + HAL1 LINE L1 1675 1917 -590 1 1127 214 265 0 0 chr1 71070215 71070264 -126125168 + L2c LINE L2 3339 3387 0 1 1127 423 0 0 0 chr1 71070755 71070802 -126124630 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1127 21 0 0 0 chr1 71071106 71071127 -126124305 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 313 299 135 28 chr1 71071129 71071270 -126124162 - RSINE1 SINE B4 -6 159 4 1 1127 505 273 15 15 chr1 71071293 71071427 -126124005 - B1_Mur1 SINE Alu -7 142 9 1 1127 28 0 0 0 chr1 71071435 71071463 -126123969 + AT_rich Low_complexity Low_complexity 1 28 0 1 1127 1860 58 8 8 chr1 71071636 71071878 -126123554 - L1_Mus1 LINE L1 0 6567 6326 1 1127 1135 157 76 0 chr1 71071878 71072075 -126123357 + URR1A DNA MER1_type 15 226 0 1 1127 397 338 61 64 chr1 71072839 71073172 -126122260 + MER2B DNA MER2_type 3 337 -8 1 1127 342 170 0 0 chr1 71073227 71073321 -126122111 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1127 714 225 26 47 chr1 71073416 71073607 -126121825 - B3 SINE B2 -28 188 2 1 1127 180 0 0 0 chr1 71073769 71073789 -126121643 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 1 1127 1059 26 25 50 chr1 71074978 71075139 -126120293 + L1Md_F3 LINE L1 6428 6584 0 1 1127 212 209 47 0 chr1 71075977 71076020 -126119412 + PB1 SINE Alu 75 119 -8 1 1127 306 284 14 0 chr1 71076023 71076097 -126119335 + ID4_ SINE ID 9 83 0 1 1127 554 144 0 19 chr1 71076097 71076203 -126119229 + GA-rich Low_complexity Low_complexity 4 107 0 1 1127 29 0 0 0 chr1 71076464 71076493 -126118939 + AT_rich Low_complexity Low_complexity 1 29 0 1 1127 207 0 0 0 chr1 71076760 71076783 -126118649 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1127 521 288 138 12 chr1 71078172 71078425 -126117007 + B4A SINE B4 2 286 -6 1 1127 387 0 0 0 chr1 71078454 71078497 -126116935 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1127 399 41 0 0 chr1 71078726 71078775 -126116657 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1127 384 119 0 0 chr1 71079424 71079483 -126115949 + (GGA)n Simple_repeat Simple_repeat 1 59 0 1 1127 207 0 0 0 chr1 71079502 71079525 -126115907 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1127 198 0 0 0 chr1 71079525 71079546 -126115886 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1127 1449 276 233 48 chr1 71079921 71081160 -126114272 + Lx9 LINE L1 6158 7624 -20 1 1127 389 220 79 63 chr1 71083257 71083383 -126112049 - RSINE1 SINE B4 0 165 38 1 1127 332 315 120 16 chr1 71083820 71084004 -126111428 + MER82 DNA MER2_type 451 653 0 1 1127 275 320 80 24 chr1 71084011 71084136 -126111296 - MIRb SINE MIR -115 153 22 1 1127 743 254 70 0 chr1 71084365 71084550 -126110882 + B3A SINE B2 1 198 0 1 1127 458 263 97 8 chr1 71084816 71084950 -126110482 + B1F SINE Alu 2 147 -2 1 1127 501 57 0 54 chr1 71084959 71085052 -126110380 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1127 877 118 37 6 chr1 71087606 71087768 -126107664 + Lx LINE L1 6479 6645 -9 1 1127 21 36 0 0 chr1 71088376 71088404 -126107028 + AT_rich Low_complexity Low_complexity 1 28 0 1 1127 301 292 11 43 chr1 71089842 71089935 -126105497 + PB1D10 SINE Alu 23 112 -5 1 1127 515 313 11 51 chr1 71090194 71090369 -126105063 - ID_B1 SINE B4 0 224 57 1 1127 311 315 65 49 chr1 71090687 71090849 -126104583 + B4A SINE B4 128 292 0 1 1127 230 212 23 34 chr1 71092368 71092456 -126102976 + Lx9 LINE L1 7558 7644 0 1 1127 1448 68 16 5 chr1 71092956 71093148 -126102284 + B2_Mm2 SINE B2 2 195 0 1 1127 1454 63 16 5 chr1 71093529 71093721 -126101711 + B2_Mm2 SINE B2 2 195 0 1 1127 229 263 33 50 chr1 71093907 71093967 -126101465 + ID4 SINE ID 23 81 -2 1 1127 188 0 74 0 chr1 71094076 71094103 -126101329 + (TTAAA)n Simple_repeat Simple_repeat 2 30 0 1 1127 194 81 27 0 chr1 71094164 71094201 -126101231 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1127 270 0 0 0 chr1 71094693 71094723 -126100709 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1127 382 289 61 79 chr1 71096196 71096361 -126099071 + RSINE1 SINE B4 4 165 0 1 1127 221 154 0 25 chr1 71096786 71096826 -126098606 - L2a LINE L2 -84 3342 3304 1 1127 237 119 0 0 chr1 71096837 71096879 -126098553 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 1 1127 341 240 0 74 chr1 71097337 71097418 -126098014 + PB1D10 SINE Alu 43 117 0 1 1127 340 311 41 0 chr1 71097719 71097824 -126097608 + MIR3 SINE MIR 82 184 -24 1 1127 199 303 30 15 chr1 71099245 71099312 -126096120 + L2 LINE L2 2348 2415 -1004 1 1127 1920 212 53 40 chr1 71101058 71101658 -126093774 + L1_Mur3 LINE L1 2556 3163 -2717 1 1127 399 21 0 0 chr1 71102035 71102083 -126093349 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1127 187 358 64 0 chr1 71102185 71102294 -126093138 - MIR3 SINE MIR -9 199 84 1 1127 27 0 0 0 chr1 71102410 71102437 -126092995 + AT_rich Low_complexity Low_complexity 1 27 0 1 1127 336 24 0 0 chr1 71102530 71102571 -126092861 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1127 252 0 0 0 chr1 71103353 71103381 -126092051 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1127 284 102 20 0 chr1 71103540 71103589 -126091843 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 1 1127 337 303 7 77 chr1 71105019 71105162 -126090270 - RSINE1 SINE B4 -29 136 4 1 1127 532 229 17 17 chr1 71105188 71105308 -126090124 - PB1D9 SINE Alu 0 120 1 1 1127 1192 48 7 0 chr1 71105399 71105545 -126089887 + B1_Mus2 SINE Alu 1 147 0 1 1127 243 0 0 0 chr1 71105555 71105582 -126089850 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1127 498 339 55 21 chr1 71106238 71106476 -126088956 + MIR SINE MIR 10 255 -7 1 1127 26 0 0 0 chr1 71106645 71106671 -126088761 + AT_rich Low_complexity Low_complexity 1 26 0 1 1127 317 211 17 34 chr1 71108159 71108227 -126087205 + PB1 SINE Alu 62 120 -7 1 1127 529 324 88 37 chr1 71108416 71108791 -126086641 + Lx8 LINE L1 6901 7294 -179 1 1127 243 189 0 0 chr1 71108884 71108937 -126086495 + GA-rich Low_complexity Low_complexity 2 54 0 1 1127 1215 51 0 0 chr1 71108962 71109118 -126086314 + B2_Mm2 SINE B2 2 157 -38 1 1127 198 0 0 0 chr1 71109118 71109140 -126086292 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1 1127 193 284 60 0 chr1 71109688 71109755 -126085677 - L2 LINE L2 -344 3075 3005 1 1127 880 127 48 34 chr1 71109774 71109921 -126085511 + B1_Mur4 SINE Alu 1 149 -1 1 1127 411 313 105 11 chr1 71110292 71110473 -126084959 - MER3 DNA MER1_type -10 199 2 1 1127 275 331 118 18 chr1 71110663 71110832 -126084600 - MIRc SINE MIR -66 202 17 1 1127 186 43 0 0 chr1 71111076 71111099 -126084333 + (CATA)n Simple_repeat Simple_repeat 2 24 0 1 1127 27 62 0 0 chr1 71112934 71112982 -126082450 + AT_rich Low_complexity Low_complexity 1 48 0 1 1127 23 54 0 0 chr1 71113775 71113812 -126081620 + AT_rich Low_complexity Low_complexity 1 37 0 1 1127 184 0 97 0 chr1 71115065 71115096 -126080336 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1127 1627 140 20 27 chr1 71115167 71115460 -126079972 + RLTR31_Mm LTR ERVK 1 291 -270 1 1127 180 0 0 0 chr1 71115548 71115568 -126079864 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1127 2238 117 91 14 chr1 71116432 71116796 -126078636 + ORR1B1 LTR MaLR 3 394 0 1 1127 256 382 43 31 chr1 71116962 71117124 -126078308 - Tigger10 DNA Tigger -27 1816 1653 1 1127 385 264 170 20 chr1 71117320 71117467 -126077965 - MTEa LTR MaLR -7 372 204 1 1127 4942 231 82 23 chr1 71117650 71118944 -126076488 + ORR1C2-int LTR MaLR 1 1370 0 1 1127 242 175 0 0 chr1 71118946 71118986 -126076446 + ORR1C2 LTR MaLR 1 40 -344 1 1127 655 209 190 27 chr1 71118963 71119197 -126076235 + ORR1C2 LTR MaLR 143 382 -2 1 1127 551 314 7 7 chr1 71119225 71119363 -126076069 - B1F1 SINE Alu -11 138 1 1 1127 21 0 0 0 chr1 71122764 71122785 -126072647 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 186 71 0 0 chr1 71123605 71123633 -126071799 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1127 248 330 55 28 chr1 71125596 71125705 -126069727 + MLT1C LTR MaLR 356 467 0 1 1127 666 0 0 0 chr1 71125913 71125987 -126069445 + (CCCTAA)n Simple_repeat Simple_repeat 2 75 0 1 1127 42228 5 0 1 chr1 71126212 71132996 -126062436 - L1Md_A LINE L1 0 6582 1 2 1127 383 229 45 27 chr1 71133053 71133165 -126062267 - B3A SINE B2 -84 114 1 2 1127 470 161 40 90 chr1 71133205 71133382 -126062050 - Lx9 LINE L1 0 7644 7477 2 1127 220 164 0 29 chr1 71133391 71133460 -126061972 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1127 553 237 117 11 chr1 71133460 71133639 -126061793 + Lx9 LINE L1 7224 7421 -223 2 1127 539 284 108 28 chr1 71135212 71135426 -126060006 + ORR1E LTR MaLR 19 249 -110 2 1127 313 252 103 37 chr1 71135690 71135797 -126059635 + MLT1C LTR MaLR 311 424 -43 2 1127 322 303 72 18 chr1 71137580 71137691 -126057741 + B1F2 SINE Alu 13 129 -20 2 1127 783 252 136 30 chr1 71138964 71139296 -126056136 + Lx8 LINE L1 7107 7473 0 2 1127 30 0 0 0 chr1 71139593 71139623 -126055809 + AT_rich Low_complexity Low_complexity 1 30 0 2 1127 3580 108 127 12 chr1 71140590 71141182 -126054250 + RLTR33 LTR ERVK 19 678 0 2 1127 1786 134 46 13 chr1 71141677 71141979 -126053453 - MTC LTR MaLR -8 413 102 2 1127 809 109 0 32 chr1 71142007 71142130 -126053302 - B2_Mm2 SINE B2 -71 124 6 2 1127 450 154 65 21 chr1 71142127 71142220 -126053212 - MTC LTR MaLR -324 97 1 2 1127 321 47 0 0 chr1 71142534 71142577 -126052855 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1127 224 316 100 12 chr1 71142582 71142662 -126052770 - PB1D7 SINE Alu -33 87 1 2 1127 1935 224 192 21 chr1 71142689 71143258 -126052174 - Lx6 LINE L1 -1 7459 6794 2 1127 396 288 17 17 chr1 71143768 71143888 -126051544 + PB1D7 SINE Alu 1 120 0 2 1127 188 310 17 17 chr1 71144238 71144297 -126051135 - L2a LINE L2 -97 3329 3271 2 1127 1264 238 117 11 chr1 71144564 71144933 -126050499 + MTD LTR MaLR 12 419 0 2 1127 744 299 59 65 chr1 71145640 71145930 -126049502 - B4A SINE B4 0 292 5 2 1127 238 273 18 0 chr1 71145949 71146004 -126049428 + PB1D10 SINE Alu 19 74 -43 2 1127 270 176 0 0 chr1 71146035 71146086 -126049346 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1127 365 340 27 20 chr1 71147001 71147148 -126048284 + B1F1 SINE Alu 2 149 0 2 1127 183 42 0 0 chr1 71147253 71147277 -126048155 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1127 453 263 22 8 chr1 71147279 71147413 -126048019 - B1_Mur1 SINE Alu -12 137 2 2 1127 702 159 207 32 chr1 71148175 71148363 -126047069 - URR1B DNA MER1_type 0 225 5 2 1127 258 32 0 0 chr1 71148546 71148577 -126046855 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1127 597 283 91 14 chr1 71150181 71150389 -126045043 - ID_B1 SINE B4 0 224 1 2 1127 453 179 97 164 chr1 71150676 71150810 -126044622 + B1_Mus1 SINE Alu 23 147 -1 2 1127 251 285 185 40 chr1 71150912 71151121 -126044311 + L2c LINE L2 3001 3230 -157 2 1127 409 303 0 39 chr1 71151260 71151284 -126044148 + MLT1A LTR MaLR 7 26 -348 2 1127 2817 80 143 139 chr1 71151284 71151794 -126043638 - RLTR1B LTR ERV1 0 512 1 2 1127 409 303 0 39 chr1 71151794 71151896 -126043536 + MLT1A LTR MaLR 27 128 -246 2 1127 2745 152 7 81 chr1 71151896 71152461 -126042971 + RLTR24 LTR ERV1 1 523 -6 2 1127 241 239 22 0 chr1 71152879 71152925 -126042507 - ID4_ SINE ID -36 47 1 2 1127 362 212 25 0 chr1 71153181 71153261 -126042171 - PB1D10 SINE Alu -7 110 29 2 1127 195 234 64 0 chr1 71153280 71153327 -126042105 + MIRc SINE MIR 107 156 -112 2 1127 414 0 0 0 chr1 71153834 71153880 -126041552 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1127 641 200 32 0 chr1 71154727 71154852 -126040580 + B1_Mus2 SINE Alu 19 147 0 2 1127 241 102 40 20 chr1 71154856 71154906 -126040526 + A-rich Low_complexity Low_complexity 3 53 0 2 1127 389 343 21 21 chr1 71155153 71155293 -126040139 + MIR SINE MIR 2 141 -121 2 1127 202 250 11 35 chr1 71155376 71155463 -126039969 + GA-rich Low_complexity Low_complexity 3 87 0 2 1127 1185 82 7 0 chr1 71157579 71157725 -126037707 + B1_Mus1 SINE Alu 2 148 0 2 1127 23 0 0 0 chr1 71157741 71157764 -126037668 + AT_rich Low_complexity Low_complexity 1 23 0 2 1127 394 302 45 23 chr1 71157835 71157967 -126037465 + B1F SINE Alu 15 149 0 2 1127 264 213 168 11 chr1 71157971 71158066 -126037366 + PB1D7 SINE Alu 1 110 -39 2 1127 266 318 59 22 chr1 71158171 71158306 -126037126 - MIRb SINE MIR -102 166 27 2 1127 513 336 7 0 chr1 71159224 71159367 -126036065 - ID_B1 SINE B4 0 224 81 2 1127 909 60 13 107 chr1 71159397 71159546 -126035886 - B1_Mus1 SINE Alu -8 140 6 2 1127 285 255 68 50 chr1 71159562 71159723 -126035709 + MER63D DNA AcHobo 137 300 -761 2 1127 285 250 0 0 chr1 71159770 71159826 -126035606 + MER63D DNA AcHobo 297 352 -709 2 1127 180 152 0 0 chr1 71159922 71159955 -126035477 + A-rich Low_complexity Low_complexity 1 33 0 2 1127 398 296 43 22 chr1 71160651 71160789 -126034643 - B1F1 SINE Alu -8 141 1 2 1127 219 329 50 106 chr1 71160789 71160802 -126034630 - B4 SINE B4 -65 174 77 2 1127 2340 167 241 12 chr1 71161417 71161903 -126033529 - MT2B LTR ERVL 0 601 5 2 1127 414 221 114 9 chr1 71161903 71162017 -126033415 + ID_B1 SINE B4 95 220 -4 2 1127 389 309 112 25 chr1 71162271 71162467 -126032965 + LTR80B LTR ERVL 156 368 -216 2 1127 262 361 0 0 chr1 71162484 71162567 -126032865 + GA-rich Low_complexity Low_complexity 3 85 0 2 1127 782 169 35 14 chr1 71162655 71162799 -126032633 - B1F2 SINE Alu 0 149 3 2 1127 337 253 77 59 chr1 71163518 71163640 -126031792 + MTE2b LTR MaLR 56 188 -191 2 1127 1103 220 126 22 chr1 71163629 71163960 -126031472 + RLTR11A LTR ERVK 175 524 -4 2 1127 865 256 75 15 chr1 71163964 71164177 -126031255 + MTE2b LTR MaLR 141 408 -13 2 1127 337 246 146 8 chr1 71164260 71164383 -126031049 + MIRc SINE MIR 128 267 -1 2 1127 1021 313 159 46 chr1 71165373 71165965 -126029467 + MER21B LTR ERV1 190 848 -15 2 1127 340 141 47 0 chr1 71165960 71166024 -126029408 + MTE2b LTR MaLR 313 379 0 2 1127 24 0 0 0 chr1 71167265 71167289 -126028143 + AT_rich Low_complexity Low_complexity 1 24 0 2 1127 242 356 59 10 chr1 71167786 71167805 -126027627 + ID SINE ID 65 88 -136 2 1127 375 267 92 11 chr1 71167805 71167912 -126027520 + B1F SINE Alu 3 112 -8 2 1127 396 315 15 37 chr1 71167953 71168088 -126027344 + RSINE1 SINE B4 3 134 -31 2 1127 264 284 42 33 chr1 71168393 71168513 -126026919 - MLT1A0 LTR MaLR -229 136 16 2 1127 303 305 71 125 chr1 71168625 71168921 -126026511 - ORR1E LTR MaLR -53 306 27 2 1127 246 343 10 10 chr1 71169112 71169215 -126026217 - Lx9 LINE L1 -1174 6470 6368 2 1127 347 270 0 0 chr1 71169877 71169966 -126025466 + PB1D10 SINE Alu 27 115 -2 2 1127 5452 83 50 1 chr1 71170110 71171679 -126023753 - L1VL2 LINE L1 -1789 1826 176 2 1127 257 272 24 24 chr1 71171875 71171958 -126023474 + ID4 SINE ID 1 83 0 2 1127 258 32 0 0 chr1 71172027 71172058 -126023374 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1128 627 250 41 56 chr1 71172121 71172316 -126023116 + MER34A1 LTR ERV1 11 202 -385 2 1128 750 244 148 84 chr1 71172471 71172721 -126022711 - ORR1D2 LTR MaLR 0 374 109 2 1128 252 0 0 0 chr1 71172729 71172757 -126022675 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1128 547 376 21 38 chr1 71174818 71175108 -126020324 + MLT1D LTR MaLR 182 466 -39 2 1128 1118 71 0 0 chr1 71175957 71176098 -126019334 + B1_Mus2 SINE Alu 1 141 -6 2 1128 207 0 0 0 chr1 71176101 71176124 -126019308 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1128 387 0 0 0 chr1 71176317 71176360 -126019072 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1128 663 182 38 0 chr1 71177053 71177185 -126018247 + B1_Mur4 SINE Alu 1 137 -13 2 1128 3393 25 5 2 chr1 71177428 71177823 -126017609 + MTA_Mm LTR MaLR 1 396 0 2 1128 634 307 104 27 chr1 71178185 71178483 -126016949 - RMER15 LTR ERVL -4 571 251 2 1128 180 217 0 0 chr1 71178861 71178907 -126016525 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2 1128 186 174 0 0 chr1 71178906 71178952 -126016480 + GA-rich Low_complexity Low_complexity 1 46 0 2 1128 500 288 16 0 chr1 71179059 71179184 -126016248 + B4 SINE B4 2 128 -164 2 1128 216 0 0 0 chr1 71179974 71179998 -126015434 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1128 1168 62 7 0 chr1 71180008 71180154 -126015278 - B1_Mus1 SINE Alu -1 147 1 2 1128 217 330 42 88 chr1 71180755 71181017 -126014415 - L4 LINE RTE -1 2028 1779 2 1128 297 232 18 0 chr1 71182214 71182270 -126013162 + MER87 LTR ERV1 407 463 -78 2 1128 1952 190 45 28 chr1 71182317 71182717 -126012715 - MTB_Mm LTR MaLR 0 407 1 2 1128 227 285 144 15 chr1 71183310 71183442 -126011990 + L2a LINE L2 3278 3426 0 2 1128 377 291 27 18 chr1 71183495 71183507 -126011925 + PB1D10 SINE Alu 1 33 -84 2 1128 452 187 13 0 chr1 71183507 71183582 -126011850 + ID_B1 SINE B4 96 171 -53 2 1128 377 291 27 18 chr1 71183582 71183607 -126011825 + PB1D10 SINE Alu 34 113 -4 2 1128 319 279 88 26 chr1 71184650 71184764 -126010668 - MIRc SINE MIR -48 220 100 2 1128 306 0 0 0 chr1 71184830 71184864 -126010568 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1128 3168 163 24 51 chr1 71185571 71186193 -126009239 + RLTR1D LTR ERV1 1 605 0 2 1128 2963 61 3 18 chr1 71186356 71186742 -126008690 - L1_Mus1 LINE L1 -2 6565 6186 2 1128 822 384 42 19 chr1 71187874 71188450 -126006982 + L2 LINE L2 2004 2592 -827 2 1128 586 292 17 17 chr1 71188511 71188685 -126006747 - MER57E1 LTR ERV1 0 372 199 2 1128 370 227 116 16 chr1 71190438 71190559 -126004873 - MLT2B1 LTR ERVL -387 133 1 3 1128 393 176 28 0 chr1 71190617 71190725 -126004707 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1128 544 284 124 49 chr1 71191762 71192110 -126003322 + MLT1A LTR MaLR 1 374 0 3 1128 436 300 0 0 chr1 71192748 71192848 -126002584 - PB1D10 SINE Alu -15 102 3 3 1128 3758 39 2 7 chr1 71192860 71193320 -126002112 - L1Md_F2 LINE L1 -12 6570 6113 3 1128 33332 78 4 20 chr1 71193337 71198866 -125996566 - L1Md_F2 LINE L1 0 5883 446 3 1128 833 263 34 5 chr1 71198898 71199104 -125996328 - B3 SINE B2 -4 212 1 3 1128 210 100 0 48 chr1 71200275 71200317 -125995115 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1128 686 203 28 14 chr1 71200320 71200465 -125994967 - B1_Mur3 SINE Alu 0 149 3 3 1128 607 359 0 28 chr1 71201426 71201641 -125993791 + LTR16A LTR ERVL 16 224 -227 3 1128 426 265 67 17 chr1 71201645 71201764 -125993668 + MLT1E3 LTR MaLR 7 131 -493 3 1128 21 36 0 0 chr1 71201764 71201792 -125993640 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 416 291 58 10 chr1 71202713 71202817 -125992615 - PB1D10 SINE Alu -7 110 2 3 1128 230 350 25 95 chr1 71202817 71202922 -125992510 + B4 SINE B4 67 160 -132 3 1128 1204 277 31 9 chr1 71202973 71203290 -125992142 + MTEa LTR MaLR 1 324 -55 3 1128 953 270 27 172 chr1 71203361 71203804 -125991628 + MTEa LTR MaLR 1 379 0 3 1128 466 245 44 235 chr1 71203805 71203938 -125991494 + MTEa-int LTR MaLR 2 75 -1505 3 1128 1068 69 7 0 chr1 71203938 71204083 -125991349 - L1_Mus2 LINE L1 -4 6562 6417 3 1128 466 245 44 235 chr1 71204083 71204221 -125991211 + MTEa-int LTR MaLR 76 221 -1359 3 1128 538 300 41 26 chr1 71204328 71204598 -125990834 - RLTR15 LTR ERVK -73 286 13 3 1128 547 350 19 58 chr1 71204595 71204856 -125990576 + MTEa-int LTR MaLR 300 550 -1030 3 1128 1667 303 55 15 chr1 71204853 71205329 -125990103 + MTEa-int LTR MaLR 1081 1575 -5 3 1128 872 254 129 73 chr1 71205336 71205693 -125989739 + MTEa LTR MaLR 3 379 0 3 1128 306 0 0 0 chr1 71205782 71205816 -125989616 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1128 595 355 18 36 chr1 71205825 71206135 -125989297 + MLT1E3 LTR MaLR 220 523 -101 3 1128 487 324 37 12 chr1 71206479 71206723 -125988709 + HERV16-int LTR ERVL 2233 2482 -2514 3 1128 309 109 0 0 chr1 71206726 71206772 -125988660 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 3 1128 240 220 203 0 chr1 71206778 71206837 -125988595 - ID4_ SINE ID -11 72 2 3 1128 312 216 27 0 chr1 71207832 71207906 -125987526 - MADE2 DNA Mariner -4 76 1 3 1128 473 104 13 0 chr1 71208870 71208947 -125986485 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 3 1128 328 337 28 60 chr1 71209073 71209288 -125986144 - MLT1I LTR MaLR -196 215 8 3 1128 279 0 0 0 chr1 71209454 71209485 -125985947 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1128 1492 0 0 22 chr1 71210308 71210490 -125984942 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1128 251 190 16 49 chr1 71210490 71210612 -125984820 + CT-rich Low_complexity Low_complexity 1 118 0 3 1128 736 280 35 45 chr1 71210851 71211225 -125984207 - L1MD LINE L1 -3196 2950 2581 3 1128 271 241 100 33 chr1 71211249 71211369 -125984063 + HERV16-int LTR ERVL 2318 2445 -2551 3 1128 513 92 0 0 chr1 71211423 71211499 -125983933 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1128 324 175 0 0 chr1 71211693 71211750 -125983682 + B3 SINE B2 147 203 -13 3 1128 657 254 42 0 chr1 71211873 71212015 -125983417 + B1_Mur3 SINE Alu 1 148 -1 3 1128 285 277 0 0 chr1 71212377 71212442 -125982990 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 3 1128 331 188 72 90 chr1 71212485 71212596 -125982836 + RCHARR1 DNA MER1_type 388 496 -478 3 1128 6239 126 31 8 chr1 71212602 71214050 -125981382 + Lx LINE L1 5176 6649 -5 3 1128 663 268 14 0 chr1 71214109 71214251 -125981181 + B3 SINE B2 10 153 -63 3 1128 554 63 13 0 chr1 71214251 71214330 -125981102 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1128 584 313 24 18 chr1 71214330 71214353 -125981079 + B3A SINE B2 155 176 -22 3 1128 1641 182 53 8 chr1 71214363 71214718 -125980714 + RCHARR1 DNA MER1_type 521 891 -83 3 1128 303 157 0 0 chr1 71214718 71214788 -125980644 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1128 323 321 108 18 chr1 71214849 71214960 -125980472 - RSINE1 SINE B4 -40 125 5 3 1128 439 330 46 68 chr1 71214969 71215206 -125980226 + MLT1F2-int LTR MaLR 652 883 -606 3 1128 392 264 55 0 chr1 71215250 71215341 -125980091 + ID_B1 SINE B4 129 224 0 3 1128 543 295 27 48 chr1 71215338 71215484 -125979948 + RSINE1 SINE B4 2 144 -21 3 1128 375 385 57 73 chr1 71215592 71215906 -125979526 + MLT1F2-int LTR MaLR 1177 1485 -4 3 1128 198 0 0 0 chr1 71215948 71215970 -125979462 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1128 259 191 68 15 chr1 71216572 71216705 -125978727 + (TA)n Simple_repeat Simple_repeat 2 141 0 3 1128 639 360 99 44 chr1 71216750 71217163 -125978269 + MLT1F2 LTR MaLR 25 460 -100 3 1128 1233 260 68 3 chr1 71217184 71217535 -125977897 + MTE2b LTR MaLR 5 378 -1 3 1128 1039 270 65 67 chr1 71217944 71218148 -125977284 + RLTR12B LTR ERVK 47 256 -272 3 1128 786 57 37 37 chr1 71218148 71218311 -125977121 + (CAGAGA)n Simple_repeat Simple_repeat 2 164 0 3 1128 1039 270 65 67 chr1 71218311 71218334 -125977098 + RLTR12B LTR ERVK 257 269 -259 3 1128 375 23 0 0 chr1 71218334 71218378 -125977054 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1128 1039 270 65 67 chr1 71218378 71218626 -125976806 + RLTR12B LTR ERVK 270 522 -6 3 1128 5200 162 97 33 chr1 71218641 71220482 -125974950 + L1_Mur3 LINE L1 369 2338 -3542 3 1128 2477 87 0 34 chr1 71220467 71220850 -125974582 - L1_Mm LINE L1 -2201 3682 3313 3 1128 3177 66 44 33 chr1 71220850 71221303 -125974129 + L1Md_F2 LINE L1 6125 6582 0 3 1128 305 159 16 0 chr1 71221305 71221368 -125974064 + L1_Mur3 LINE L1 2331 2394 -3486 3 1128 338 149 0 29 chr1 71221370 71221439 -125973993 + A-rich Low_complexity Low_complexity 2 68 0 3 1128 4297 157 18 36 chr1 71221439 71221960 -125973472 + L1_Mur3 LINE L1 2385 2917 -2963 3 1128 1204 55 0 0 chr1 71221960 71222106 -125973326 + B1_Mm SINE Alu 2 147 0 3 1128 4297 157 18 36 chr1 71222106 71222332 -125973100 + L1_Mur3 LINE L1 2918 3119 -2761 3 1128 5335 100 99 5 chr1 71222332 71223156 -125972276 - RMER17A2 LTR ERVK -4 902 1 3 1128 16772 153 31 25 chr1 71223156 71225795 -125969637 + L1_Mur3 LINE L1 3120 5791 -89 3 1128 1357 258 24 5 chr1 71225791 71226162 -125969270 + Lx7 LINE L1 6990 7367 -329 3 1128 2405 183 231 16 chr1 71226215 71226626 -125968806 - RMER19A LTR ERVK 0 737 256 3 1128 4296 156 9 33 chr1 71226626 71227381 -125968051 + RMER19A LTR ERVK 1 737 0 3 1128 2405 183 231 16 chr1 71227381 71227576 -125967856 - RMER19A LTR ERVK -482 255 1 3 1128 253 161 81 0 chr1 71227576 71227638 -125967794 + Lx6 LINE L1 7391 7457 -3 3 1128 1247 274 46 39 chr1 71227641 71228029 -125967403 + MARNA DNA Mariner 166 556 -30 3 1128 2219 152 66 6 chr1 71228187 71228551 -125966881 + ORR1B1 LTR MaLR 1 386 -8 3 1128 556 293 0 29 chr1 71228789 71228810 -125966622 + ID SINE ID 64 80 -144 3 1128 788 189 65 7 chr1 71228810 71228949 -125966483 + B1_Mur3 SINE Alu 3 149 0 3 1128 231 114 0 0 chr1 71231193 71231228 -125964204 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1128 1060 161 29 88 chr1 71231523 71231762 -125963670 - URR1B DNA MER1_type 0 225 1 3 1128 326 326 108 41 chr1 71231877 71232072 -125963360 + LTR84a LTR ERVL 147 354 -403 3 1128 216 0 0 0 chr1 71232213 71232237 -125963195 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 3 1128 5783 175 66 7 chr1 71232251 71233747 -125961685 - Lx4B LINE L1 -36 7022 5433 3 1128 8210 119 35 1 chr1 71233736 71235131 -125960301 - Lx4B LINE L1 -1338 4539 3097 3 1128 232 194 0 53 chr1 71235150 71235226 -125960206 + CT-rich Low_complexity Low_complexity 6 77 0 3 1128 1063 112 48 48 chr1 71235362 71235550 -125959882 - B2_Mm2 SINE B2 -6 189 2 3 1128 270 309 19 0 chr1 71236249 71236340 -125959092 + ID2 SINE ID 2 95 -57 3 1128 274 182 18 0 chr1 71236401 71236456 -125958976 + Arthur1C DNA Tip100 285 340 -23 3 1128 226 376 39 16 chr1 71236510 71236637 -125958795 + LTR84a LTR ERVL 495 624 -133 3 1128 356 344 29 44 chr1 71236770 71236907 -125958525 + RSINE1 SINE B4 2 136 -29 3 1128 426 39 0 0 chr1 71236924 71236976 -125958456 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1128 216 0 0 0 chr1 71236976 71237000 -125958432 + (CTA)n Simple_repeat Simple_repeat 3 26 0 3 1128 198 0 0 0 chr1 71237000 71237022 -125958410 + (TAA)n Simple_repeat Simple_repeat 1 22 0 3 1128 699 300 31 81 chr1 71237333 71237594 -125957838 + MER47B DNA MER2_type 5 252 -166 3 1128 423 0 0 0 chr1 71237799 71237846 -125957586 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1128 21 0 0 0 chr1 71238172 71238193 -125957239 + AT_rich Low_complexity Low_complexity 1 21 0 3 1128 4176 105 27 2 chr1 71238193 71238794 -125956638 - Lx LINE L1 0 6654 6039 3 1128 7348 139 5 21 chr1 71238794 71240094 -125955338 - L1_Mur2 LINE L1 -1024 4853 3576 3 1128 279 258 45 15 chr1 71240095 71240162 -125955270 + MER47B DNA MER2_type 347 415 -3 3 1128 1368 227 89 14 chr1 71240665 71241013 -125954419 - ORR1D1 LTR MaLR 0 374 1 3 1128 201 61 91 0 chr1 71241244 71241277 -125954155 + T-rich Low_complexity Low_complexity 2 37 0 3 1128 584 200 67 0 chr1 71241278 71241383 -125954049 - B1_Mur4 SINE Alu -36 114 3 3 1128 946 121 51 0 chr1 71241395 71241552 -125953880 - Lx9 LINE L1 -617 7027 6863 3 1128 1315 167 104 0 chr1 71241541 71241859 -125953573 + Lx9 LINE L1 7293 7643 -1 3 1128 285 29 0 0 chr1 71241904 71241938 -125953494 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1128 392 391 29 2 chr1 71242672 71242835 -125952597 - MLT1H1 LTR MaLR -377 192 17 3 1128 427 370 56 16 chr1 71243138 71243459 -125951973 + Tigger15a DNA TcMar 5 338 -377 3 1128 1924 172 30 11 chr1 71244842 71245207 -125950225 - ORR1D1 LTR MaLR -2 372 1 3 1128 349 336 0 78 chr1 71245784 71245913 -125949519 + B1_Mur2 SINE Alu 1 119 -1 3 1128 732 264 27 16 chr1 71245931 71246116 -125949316 + B3 SINE B2 30 216 0 3 1128 1116 114 6 0 chr1 71246315 71246482 -125948950 + Lx LINE L1 6308 6475 -179 3 1128 711 152 0 9 chr1 71246482 71246595 -125948837 - MTB_Mm LTR MaLR -295 112 1 3 1128 4046 203 47 25 chr1 71246635 71247546 -125947886 - Lx6 LINE L1 -350 7110 6180 3 1128 297 0 0 0 chr1 71247549 71247582 -125947850 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1128 671 287 159 6 chr1 71247880 71248233 -125947199 - MER45B DNA Tip100 -26 1014 608 3 1128 436 318 78 28 chr1 71248528 71248962 -125946470 - L1ME1 LINE L1 -266 5913 5458 3 1128 231 103 0 0 chr1 71249092 71249131 -125946301 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 3 1128 2871 62 8 0 chr1 71249159 71249530 -125945902 - L1Md_F2 LINE L1 0 6582 6209 3 1128 203 194 0 0 chr1 71249692 71249728 -125945704 + T-rich Low_complexity Low_complexity 1 36 0 4 1128 405 255 81 10 chr1 71249731 71249830 -125945602 - PB1D10 SINE Alu -2 115 10 4 1128 3379 96 29 2 chr1 71250600 71251114 -125944318 - L1_Mus2 LINE L1 -680 5203 4676 4 1128 7074 73 9 10 chr1 71251113 71252453 -125942979 + L1_Mus2 LINE L1 5226 6564 -2 4 1128 441 344 115 37 chr1 71253949 71254245 -125941187 - MLT1L LTR MaLR -91 519 201 4 1128 21 0 0 0 chr1 71254335 71254356 -125941076 + AT_rich Low_complexity Low_complexity 1 21 0 4 1128 528 308 67 51 chr1 71254379 71254409 -125941023 - B3A SINE B2 0 198 176 4 1128 225 0 0 0 chr1 71254409 71254434 -125940998 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1128 528 308 67 51 chr1 71254434 71254598 -125940834 - B3A SINE B2 -23 175 1 4 1128 452 150 26 9 chr1 71254824 71254938 -125940494 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 4 1128 300 53 0 0 chr1 71254938 71254976 -125940456 + (CATA)n Simple_repeat Simple_repeat 1 38 0 4 1128 282 241 152 0 chr1 71255014 71255093 -125940339 - ORR1E LTR MaLR -214 145 55 4 1128 7153 62 8 0 chr1 71255945 71256831 -125938601 + RLTR13B1 LTR ERVK 1 893 0 4 1128 183 345 159 11 chr1 71257575 71257663 -125937769 - L2a LINE L2 -6 3420 3320 4 1128 450 0 0 0 chr1 71257673 71257723 -125937709 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1128 24686 135 19 26 chr1 71257867 71264160 -125931272 - Lx LINE L1 -1 6653 400 4 1128 851 251 61 10 chr1 71264458 71264655 -125930777 - B3 SINE B2 -7 209 3 4 1128 240 100 0 0 chr1 71264746 71264786 -125930646 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1128 252 122 0 0 chr1 71264831 71264872 -125930560 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 1128 440 285 56 19 chr1 71264901 71265178 -125930254 + L1MA9 LINE L1 5842 6130 -182 4 1128 555 287 161 16 chr1 71265417 71265601 -125929831 + B4A SINE B4 1 214 -78 4 1128 234 0 0 0 chr1 71265601 71265627 -125929805 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4 1128 555 287 161 16 chr1 71265627 71265697 -125929735 + B4A SINE B4 215 291 -1 4 1128 2272 151 28 3 chr1 71265706 71266065 -125929367 + ORR1C1 LTR MaLR 11 378 0 4 1128 226 307 62 49 chr1 71266304 71266448 -125928984 - Charlie8 DNA MER1_type -2199 229 84 4 1128 21 36 0 0 chr1 71266987 71267015 -125928417 + AT_rich Low_complexity Low_complexity 1 28 0 4 1128 524 289 25 25 chr1 71267478 71267641 -125927791 + RSINE1 SINE B4 3 165 0 4 1128 398 347 27 7 chr1 71268546 71268694 -125926738 + RSINE1 SINE B4 1 151 -14 4 1128 461 229 203 0 chr1 71269823 71269941 -125925491 + B1_Mur1 SINE Alu 1 142 -7 4 1128 261 0 0 0 chr1 71269947 71269976 -125925456 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1128 310 317 81 40 chr1 71270115 71270199 -125925233 - MER102b DNA MER1_type -94 247 162 4 1128 2426 54 2 254 chr1 71270199 71270718 -125924714 - RLTR10 LTR ERVK -2 388 1 4 1128 310 324 79 39 chr1 71270718 71270830 -125924602 - MER102b DNA MER1_type -180 161 34 4 1128 290 204 0 11 chr1 71271216 71271305 -125924127 + (CTATA)n Simple_repeat Simple_repeat 3 90 0 4 1128 385 129 30 39 chr1 71271305 71271407 -125924025 - ORR1B1 LTR MaLR -260 134 1 4 1128 1063 112 6 11 chr1 71271586 71271766 -125923666 + L1Md_F2 LINE L1 6404 6582 0 4 1128 615 226 89 3 chr1 71271965 71272141 -125923291 - B3 SINE B2 -8 187 1 4 1128 4183 39 16 10 chr1 71272655 71273172 -125922260 + L1Md_F3 LINE L1 6065 6584 0 4 1128 332 351 85 13 chr1 71273987 71274140 -125921292 + MER5B DNA MER1_type 4 167 -11 4 1128 367 205 35 24 chr1 71274593 71274678 -125920754 + RLTR23 LTR ERV1 324 409 -21 4 1128 765 245 30 40 chr1 71274705 71274905 -125920527 + B3 SINE B2 13 210 -6 4 1128 221 274 0 69 chr1 71275188 71275290 -125920142 + (CTAG)n Simple_repeat Simple_repeat 4 98 0 4 1128 654 309 56 15 chr1 71275491 71275688 -125919744 + ID_B1 SINE B4 12 216 -8 4 1128 344 312 22 59 chr1 71275740 71275876 -125919556 - MER3 DNA MER1_type -58 151 21 4 1128 1183 68 0 0 chr1 71275972 71276118 -125919314 + B1_Mus1 SINE Alu 1 146 -2 4 1128 186 43 0 0 chr1 71276118 71276141 -125919291 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1128 212 188 16 0 chr1 71276528 71276592 -125918840 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1128 771 249 5 62 chr1 71276592 71276785 -125918647 - B3A SINE B2 -16 182 1 4 1128 235 176 43 14 chr1 71277228 71277297 -125918135 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 4 1128 23 33 0 0 chr1 71277484 71277514 -125917918 + AT_rich Low_complexity Low_complexity 1 30 0 4 1128 487 284 13 25 chr1 71277533 71277685 -125917747 - RSINE1 SINE B4 -10 155 6 4 1128 267 244 76 72 chr1 71277782 71277932 -125917500 - MIR SINE MIR -43 225 69 4 1128 594 268 39 7 chr1 71278010 71278164 -125917268 + MER5A1 DNA MER1_type 4 162 -4 4 1128 2421 89 3 0 chr1 71278343 71278669 -125916763 + ORR1A2 LTR MaLR 1 327 0 4 1128 201 39 0 0 chr1 71278736 71278762 -125916670 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4 1128 676 325 99 37 chr1 71278889 71278960 -125916472 + MamRep605 Unknown Unknown 188 257 -619 4 1128 234 0 0 0 chr1 71278960 71278986 -125916446 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1128 676 325 99 37 chr1 71278986 71279377 -125916055 + MamRep605 Unknown Unknown 258 679 -197 4 1128 1030 309 114 32 chr1 71279534 71280009 -125915423 - MT2A LTR ERVL -17 516 3 4 1128 1827 173 105 91 chr1 71280567 71281062 -125914370 - RLTR11A LTR ERVK -26 502 1 4 1128 550 242 142 6 chr1 71281438 71281551 -125913881 + B3A SINE B2 1 119 -79 4 1128 498 33 0 0 chr1 71281551 71281611 -125913821 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1128 550 242 142 6 chr1 71281611 71281659 -125913773 + B3A SINE B2 120 183 -15 4 1128 1139 91 0 0 chr1 71282208 71282362 -125913070 + B2_Mm2 SINE B2 5 158 -37 4 1128 315 0 0 0 chr1 71282363 71282398 -125913034 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 1128 621 0 0 0 chr1 71282402 71282471 -125912961 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 4 1128 432 312 44 75 chr1 71282808 71283102 -125912330 + L2 LINE L2 1908 2192 -1227 4 1128 247 359 125 24 chr1 71283176 71283464 -125911968 + L2 LINE L2 2405 2721 -698 4 1128 364 329 138 40 chr1 71283524 71283828 -125911604 - MLT1K LTR MaLR -114 481 148 4 1128 297 301 116 34 chr1 71284253 71284521 -125910911 + L1M3 LINE L1 4103 4392 -1748 4 1128 370 291 0 0 chr1 71285260 71285339 -125910093 - ID4_ SINE ID -3 80 2 4 1128 425 282 68 0 chr1 71287228 71287345 -125908087 - B1F SINE Alu -7 142 18 4 1128 4831 160 31 46 chr1 71287535 71288541 -125906891 + RLTR25A LTR ERVK 1 1028 0 4 1128 546 16 0 0 chr1 71288931 71288994 -125906438 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1128 217 323 0 15 chr1 71290060 71290126 -125905306 + CT-rich Low_complexity Low_complexity 1 65 0 4 1128 21 0 0 0 chr1 71293288 71293309 -125902123 + AT_rich Low_complexity Low_complexity 1 21 0 4 1128 189 0 0 0 chr1 71293989 71294010 -125901422 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 1128 24 0 0 0 chr1 71294755 71294779 -125900653 + AT_rich Low_complexity Low_complexity 1 24 0 4 1128 550 203 86 92 chr1 71296102 71296265 -125899167 + RSINE1 SINE B4 4 165 0 4 1128 254 194 14 0 chr1 71296278 71296350 -125899082 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1128 33810 35 0 0 chr1 71297133 71302342 -125893090 + L1Md_T LINE L1 283 5588 -298 4 17 8977 8 0 0 chr1 71302343 71303339 -125892093 + L1Md_T LINE L1 5590 6585 0 4 1129 301 290 0 0 chr1 71305462 71305531 -125889901 + ID4_ SINE ID 3 71 -12 4 1129 203 0 0 36 chr1 71305531 71305559 -125889873 + (TAA)n Simple_repeat Simple_repeat 2 28 0 4 1129 234 0 0 0 chr1 71306216 71306242 -125889190 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1129 324 70 0 0 chr1 71307240 71307283 -125888149 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1129 192 244 11 22 chr1 71307921 71308013 -125887419 + CT-rich Low_complexity Low_complexity 2 92 0 4 1129 21 0 0 0 chr1 71308129 71308150 -125887282 + AT_rich Low_complexity Low_complexity 1 21 0 4 1129 234 336 90 9 chr1 71309262 71309373 -125886059 - B4A SINE B4 -172 120 1 4 1129 400 347 0 24 chr1 71313656 71313783 -125881649 - MER5A DNA MER1_type -1 188 65 4 1129 330 315 33 59 chr1 71313657 71313809 -125881623 + MER5A DNA MER1_type 17 164 -25 4 1129 2485 146 58 0 chr1 71315836 71316234 -125879198 + MTC LTR MaLR 1 421 0 4 1129 246 143 0 0 chr1 71316253 71316302 -125879130 + (CAAAAA)n Simple_repeat Simple_repeat 4 52 0 4 1129 288 77 0 0 chr1 71316379 71316418 -125879014 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 4 1129 550 199 8 40 chr1 71316425 71316544 -125878888 - B1_Mur2 SINE Alu -21 128 15 4 1129 225 250 52 141 chr1 71316448 71316583 -125878849 - MT2B LTR ERVL -344 257 135 4 1129 183 132 79 0 chr1 71317003 71317041 -125878391 + L3 LINE CR1 4156 4196 -293 4 1129 26 74 0 0 chr1 71317236 71317290 -125878142 + AT_rich Low_complexity Low_complexity 1 54 0 4 1129 197 310 42 0 chr1 71318210 71318281 -125877151 + MIRb SINE MIR 9 82 -186 4 1129 387 211 100 0 chr1 71318459 71318549 -125876883 + PB1D9 SINE Alu 1 99 -21 4 1129 504 0 0 0 chr1 71319474 71319530 -125875902 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1129 429 129 0 0 chr1 71320485 71320555 -125874877 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 4 1129 771 162 0 0 chr1 71320601 71320743 -125874689 + (TGAA)n Simple_repeat Simple_repeat 4 145 0 4 1129 536 278 17 0 chr1 71321305 71321420 -125874012 + PB1D7 SINE Alu 2 118 -2 4 1129 27 0 0 0 chr1 71323393 71323420 -125872012 + AT_rich Low_complexity Low_complexity 1 27 0 4 1129 455 211 164 0 chr1 71323424 71323528 -125871904 - ID_B1 SINE B4 -8 216 96 4 1129 317 259 214 8 chr1 71323528 71323541 -125871891 - B1F1 SINE Alu -8 141 1 4 1129 227 322 17 17 chr1 71323880 71323997 -125871435 - L1ME3A LINE L1 -12 6161 6045 4 1129 1665 102 42 14 chr1 71323995 71324282 -125871150 - L1_Mur2 LINE L1 -1527 4350 4056 4 1129 207 0 0 0 chr1 71324440 71324463 -125870969 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1129 702 199 35 21 chr1 71325521 71325665 -125869767 + B3 SINE B2 71 216 0 5 1129 3497 25 2 0 chr1 71326245 71326640 -125868792 + MTA_Mm LTR MaLR 1 396 0 5 1129 722 335 48 33 chr1 71329877 71330149 -125865283 + B4 SINE B4 1 276 -16 5 1129 964 59 15 0 chr1 71330352 71330488 -125864944 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 5 1129 208 269 0 37 chr1 71331200 71331254 -125864178 + L2a LINE L2 3347 3398 -28 5 1129 809 332 43 10 chr1 71331470 71331868 -125863564 + Lx7 LINE L1 6769 7179 -517 5 1129 219 336 42 17 chr1 71332893 71333011 -125862421 + L3 LINE CR1 4132 4252 -237 5 1129 4255 31 0 0 chr1 71333390 71333912 -125861520 + L1_Mm LINE L1 5333 5854 -29 5 1129 2302 64 26 3 chr1 71333918 71334231 -125861201 + L1_Mus3 LINE L1 6317 6636 -2 5 1129 412 287 91 58 chr1 71334616 71334890 -125860542 - L2 LINE L2 -436 2983 2701 5 1129 246 62 0 0 chr1 71335547 71335579 -125859853 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5 1129 261 359 51 34 chr1 71335610 71335786 -125859646 + L2 LINE L2 2272 2450 -969 5 1129 305 299 187 14 chr1 71335854 71335993 -125859439 - HAL1-3A_ME LINE L1 -412 2446 2284 5 1129 284 192 27 0 chr1 71335994 71336067 -125859365 + CT-rich Low_complexity Low_complexity 3 77 0 5 1129 199 300 17 0 chr1 71336337 71336397 -125859035 - L4 LINE RTE -962 1067 1007 5 1129 1136 133 111 19 chr1 71337393 71337600 -125857832 + URR1A DNA MER1_type 1 226 0 5 1129 383 266 43 86 chr1 71338681 71338821 -125856611 - MamSINE1 SINE tRNA -155 135 2 5 1129 317 341 74 52 chr1 71339321 71339550 -125855882 - L1MB7 LINE L1 -44 6140 5907 5 1129 337 103 14 14 chr1 71340394 71340463 -125854969 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 1129 350 344 106 8 chr1 71341886 71342009 -125853423 + RSINE1 SINE B4 3 137 -28 5 1129 215 214 0 0 chr1 71342018 71342060 -125853372 + CT-rich Low_complexity Low_complexity 1 42 0 5 1129 257 214 54 0 chr1 71342070 71342126 -125853306 + tRNA-Ala-GCY_ tRNA tRNA 8 66 -9 5 1129 531 56 0 0 chr1 71342128 71342199 -125853233 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1129 1098 67 0 0 chr1 71342878 71343013 -125852419 + B1_Mus1 SINE Alu 2 136 -12 5 1129 265 24 48 0 chr1 71343028 71343070 -125852362 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 5 1129 591 201 0 0 chr1 71345096 71345240 -125850192 + (CA)n Simple_repeat Simple_repeat 2 145 0 5 1129 615 191 18 0 chr1 71345262 71345372 -125850060 + PB1D9 SINE Alu 1 112 -8 5 1129 209 285 124 51 chr1 71345851 71345988 -125849444 + MIR3 SINE MIR 4 150 -58 5 1129 216 0 0 0 chr1 71348146 71348170 -125847262 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1129 184 323 16 0 chr1 71348340 71348402 -125847030 - MER5A DNA MER1_type -111 78 16 5 1129 266 320 39 23 chr1 71348889 71349017 -125846415 + MIRc SINE MIR 108 237 -31 5 1129 348 24 0 0 chr1 71350221 71350262 -125845170 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1129 1059 291 17 41 chr1 71350567 71350861 -125844571 + B4A SINE B4 4 290 -2 5 1129 2005 137 178 64 chr1 71350972 71351408 -125844024 + RLTR20A LTR ERVK 3 482 -59 5 1129 399 21 0 0 chr1 71351408 71351456 -125843976 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1129 2005 137 178 64 chr1 71351456 71351503 -125843929 + RLTR20A LTR ERVK 483 540 -1 5 1129 648 249 61 86 chr1 71351575 71351773 -125843659 + B3A SINE B2 1 193 -5 5 1129 327 264 0 0 chr1 71351862 71351934 -125843498 + ID4 SINE ID 5 76 -7 5 1129 191 267 13 0 chr1 71352494 71352569 -125842863 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1129 207 151 0 0 chr1 71354795 71354815 -125840617 + A-rich Low_complexity Low_complexity 1 20 0 5 1129 1023 86 50 0 chr1 71354815 71354955 -125840477 + B1_Mus2 SINE Alu 1 147 0 5 1129 207 151 0 0 chr1 71354955 71354987 -125840445 + A-rich Low_complexity Low_complexity 21 52 0 5 1129 210 71 0 0 chr1 71355430 71355458 -125839974 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1129 400 264 9 19 chr1 71356904 71357012 -125838420 + PB1D10 SINE Alu 1 107 -10 5 1129 270 306 24 0 chr1 71357702 71357787 -125837645 - BC1_Mm scRNA scRNA -64 88 2 5 1129 6399 52 0 1 chr1 71357801 71358585 -125836847 - L1Md_F2 LINE L1 -12 6570 5788 5 1129 231 284 68 43 chr1 71360242 71360410 -125835022 + MIR3 SINE MIR 56 230 -32 5 1129 505 309 113 37 chr1 71361247 71361627 -125833805 + L1MB7 LINE L1 5508 5916 -268 5 1129 1190 196 17 8 chr1 71362570 71362807 -125832625 + Lx5 LINE L1 6811 7049 -1 5 1129 463 254 43 138 chr1 71363121 71363149 -125832283 - B2_Mm2 SINE B2 -5 190 166 5 1129 222 37 0 0 chr1 71363149 71363176 -125832256 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1129 351 0 0 0 chr1 71363176 71363214 -125832218 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1129 772 254 43 138 chr1 71363214 71363394 -125832038 - B3 SINE B2 -27 189 1 5 1129 360 0 0 0 chr1 71363916 71363956 -125831476 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1129 495 0 0 0 chr1 71363956 71364010 -125831422 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1129 249 330 45 27 chr1 71364166 71364278 -125831154 - B4A SINE B4 0 292 179 5 1129 2522 50 3 6 chr1 71364307 71364626 -125830806 - L1_Mus1 LINE L1 0 6567 6250 5 1129 222 207 0 0 chr1 71364933 71364991 -125830441 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 5 1129 306 217 0 0 chr1 71365025 71365094 -125830338 + GA-rich Low_complexity Low_complexity 3 71 0 5 1129 555 195 0 0 chr1 71366152 71366275 -125829157 + (CA)n Simple_repeat Simple_repeat 2 124 0 5 1129 21 0 0 0 chr1 71367144 71367165 -125828267 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 987 210 49 0 chr1 71367229 71367434 -125827998 - B3 SINE B2 0 216 2 5 1129 369 261 72 65 chr1 71368708 71368847 -125826585 + B3A SINE B2 11 150 -48 5 1129 2016 123 3 25 chr1 71368853 71369171 -125826261 + MTC LTR MaLR 111 421 0 5 1129 915 254 52 31 chr1 71369300 71369625 -125825807 + L1M3 LINE L1 5448 5779 -404 5 1129 528 283 106 13 chr1 71369679 71370066 -125825366 + L1MB2 LINE L1 5745 6167 -4 5 1129 533 262 71 55 chr1 71370904 71370956 -125824476 - B3 SINE B2 -5 211 168 5 1129 240 35 0 0 chr1 71370956 71370985 -125824447 + (TATG)n Simple_repeat Simple_repeat 3 31 0 5 1129 533 262 71 55 chr1 71370985 71371114 -125824318 - B3 SINE B2 -49 167 28 5 1129 1243 189 33 7 chr1 71371119 71371391 -125824041 - Lx4B LINE L1 -705 6353 6075 5 1129 1626 194 96 37 chr1 71371394 71371933 -125823499 + Lx4B LINE L1 6355 7052 -6 5 1129 26 0 0 0 chr1 71371933 71371959 -125823473 + AT_rich Low_complexity Low_complexity 1 26 0 5 1129 374 229 65 32 chr1 71372470 71372618 -125822814 + B4 SINE B4 10 170 -122 5 1129 298 347 0 10 chr1 71372604 71372703 -125822729 + B4A SINE B4 187 284 -8 5 1129 615 180 115 0 chr1 71372779 71372901 -125822531 + B1_Mur2 SINE Alu 9 144 -5 5 1129 180 0 0 0 chr1 71373187 71373207 -125822225 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1129 186 43 0 0 chr1 71373345 71373368 -125822064 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1129 229 182 0 0 chr1 71373780 71373824 -125821608 + C-rich Low_complexity Low_complexity 1 44 0 5 1129 270 0 0 0 chr1 71373995 71374025 -125821407 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1129 211 321 0 0 chr1 71374819 71374872 -125820560 - L2c LINE L2 -248 3139 3087 5 1129 21 36 0 0 chr1 71377525 71377553 -125817879 + AT_rich Low_complexity Low_complexity 1 28 0 5 1129 247 240 0 0 chr1 71377734 71377784 -125817648 - tRNA-Ala-GCY_ tRNA tRNA -19 56 7 5 1129 2947 30 55 6 chr1 71377795 71378158 -125817274 - L1Md_F2 LINE L1 -3 6579 6199 5 1129 524 310 20 14 chr1 71378198 71378345 -125817087 - RSINE1 SINE B4 -15 150 3 5 1129 345 200 27 9 chr1 71378767 71378866 -125816566 + GA-rich Low_complexity Low_complexity 3 104 0 5 1129 499 100 30 0 chr1 71378866 71378966 -125816466 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 5 1129 345 200 27 9 chr1 71378966 71378977 -125816455 + polypurine Low_complexity Low_complexity 105 115 0 5 1129 450 0 0 0 chr1 71379307 71379357 -125816075 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1129 282 265 52 32 chr1 71380686 71380798 -125814634 + B1_Mur1 SINE Alu 2 138 -11 5 1129 849 258 15 5 chr1 71380811 71381014 -125814418 - B3 SINE B2 -10 206 2 5 1129 600 317 86 56 chr1 71381588 71381667 -125813765 + MLT1A0 LTR MaLR 91 178 -187 5 1129 1169 68 0 13 chr1 71381667 71381816 -125813616 + B1_Mus1 SINE Alu 2 148 0 5 1129 600 317 86 56 chr1 71381816 71382003 -125813429 + MLT1A0 LTR MaLR 179 364 -1 5 1129 22 35 0 0 chr1 71384064 71384093 -125811339 + AT_rich Low_complexity Low_complexity 1 29 0 5 1129 645 145 42 12 chr1 71384332 71384500 -125810932 + (TATG)n Simple_repeat Simple_repeat 3 175 0 5 1129 531 292 14 5 chr1 71384757 71384970 -125810462 - L1MA5 LINE L1 -392 5908 5694 5 1129 546 91 0 0 chr1 71385067 71385144 -125810288 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1129 188 24 71 24 chr1 71386585 71386627 -125808805 + (TTA)n Simple_repeat Simple_repeat 1 44 0 5 1129 683 211 45 0 chr1 71387407 71387540 -125807892 + B1_Mur2 SINE Alu 2 140 -9 5 1129 252 77 0 0 chr1 71387540 71387579 -125807853 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1129 1182 71 0 0 chr1 71387785 71387955 -125807477 + (TG)n Simple_repeat Simple_repeat 1 170 0 5 1129 259 241 36 0 chr1 71389296 71389379 -125806053 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1129 646 171 0 9 chr1 71389472 71389584 -125805848 + B1_Mur4 SINE Alu 19 129 -21 5 1129 228 255 23 18 chr1 71389584 71389657 -125805775 - MIR SINE MIR -151 117 47 5 1129 720 61 0 0 chr1 71390128 71390226 -125805206 - L1_Mus2 LINE L1 -1 6565 6468 6 1129 37 23 0 0 chr1 71390702 71390746 -125804686 + AT_rich Low_complexity Low_complexity 1 44 0 6 1129 241 291 136 50 chr1 71390809 71391051 -125804381 - Charlie5 DNA MER1_type -39 2585 2323 6 1129 583 279 122 71 chr1 71391244 71391499 -125803933 - B4A SINE B4 -20 272 5 6 1129 832 241 15 20 chr1 71391646 71391845 -125803587 - B3A SINE B2 0 198 1 6 1129 454 271 0 39 chr1 71391856 71391983 -125803449 - Charlie5 DNA MER1_type -266 2358 2237 6 1129 2058 171 74 5 chr1 71392279 71392673 -125802759 + MTC LTR MaLR 1 421 0 6 1129 640 330 90 8 chr1 71393705 71394072 -125801360 - Lx8 LINE L1 -29 7444 7048 6 1129 300 27 0 0 chr1 71395541 71395578 -125799854 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1129 252 59 0 0 chr1 71397698 71397732 -125797700 + (CAGAGA)n Simple_repeat Simple_repeat 4 37 0 6 1129 273 221 75 28 chr1 71401041 71401148 -125794284 - RMER17A LTR ERVK -281 470 359 6 1129 259 370 0 12 chr1 71401170 71401252 -125794180 - ID4_ SINE ID -2 81 1 6 1129 226 238 129 97 chr1 71403356 71403449 -125791983 + MER20B DNA MER1_type 89 184 -599 6 1129 6144 105 17 9 chr1 71404845 71405797 -125789635 + Lx LINE L1 5649 6642 -12 6 1129 255 61 0 0 chr1 71405975 71406008 -125789424 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1129 360 0 0 0 chr1 71406009 71406049 -125789383 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1129 378 61 0 0 chr1 71407737 71407786 -125787646 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 6 1129 625 219 36 7 chr1 71408547 71408685 -125786747 - B1_Mur4 SINE Alu -3 147 6 6 1129 291 276 22 44 chr1 71408608 71408699 -125786733 - B4A SINE B4 -124 168 80 6 1129 270 0 0 0 chr1 71409626 71409656 -125785776 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1129 581 257 112 0 chr1 71409663 71409815 -125785617 - B3A SINE B2 -29 169 1 6 1129 21 0 0 0 chr1 71410254 71410275 -125785157 + AT_rich Low_complexity Low_complexity 1 21 0 6 1129 649 269 101 64 chr1 71410314 71410807 -125784625 + Lx8 LINE L1 5167 5667 -1806 6 1129 509 242 0 7 chr1 71410811 71410961 -125784471 + (TA)n Simple_repeat Simple_repeat 2 150 0 6 1129 189 212 58 70 chr1 71411501 71411587 -125783845 + L3 LINE CR1 1120 1204 -3285 6 1129 662 338 25 32 chr1 71411684 71411968 -125783464 + MLT1D LTR MaLR 224 505 0 6 1129 844 249 14 28 chr1 71412420 71412631 -125782801 + B3 SINE B2 1 208 -8 6 1129 228 135 55 55 chr1 71414268 71414323 -125781109 + MER5A DNA MER1_type 24 78 -111 6 1129 202 275 79 99 chr1 71414399 71414500 -125780932 + MER5A DNA MER1_type 73 171 -18 6 1129 595 320 61 5 chr1 71414516 71414714 -125780718 - MER58A DNA MER1_type -8 216 8 6 1129 894 52 0 0 chr1 71414740 71414856 -125780576 + (TC)n Simple_repeat Simple_repeat 1 116 0 6 1129 1362 259 87 19 chr1 71416068 71416434 -125778998 + MTD LTR MaLR 27 417 -2 6 1129 204 347 31 10 chr1 71416461 71416557 -125778875 - MIRc SINE MIR -55 213 116 6 1129 273 253 94 10 chr1 71416706 71416802 -125778630 + MIRb SINE MIR 106 209 -59 6 1129 4173 48 4 0 chr1 71419025 71419542 -125775890 + L1Md_F3 LINE L1 6066 6584 0 6 1129 1035 270 33 22 chr1 71420145 71420438 -125774994 + B4A SINE B4 14 290 -2 6 1129 270 0 0 0 chr1 71420469 71420499 -125774933 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1129 180 321 168 30 chr1 71420789 71420956 -125774476 + MIRc SINE MIR 57 246 -22 6 1129 25 0 0 0 chr1 71421109 71421134 -125774298 + AT_rich Low_complexity Low_complexity 1 25 0 6 1129 201 200 33 0 chr1 71422206 71422266 -125773166 + A-rich Low_complexity Low_complexity 1 62 0 6 1129 21 0 0 0 chr1 71423796 71423817 -125771615 + AT_rich Low_complexity Low_complexity 1 21 0 6 1129 23 0 0 0 chr1 71426279 71426302 -125769130 + AT_rich Low_complexity Low_complexity 1 23 0 6 1129 818 265 19 19 chr1 71427193 71427408 -125768024 - B3 SINE B2 -1 215 1 6 1129 1874 183 11 19 chr1 71428207 71428580 -125766852 - ORR1D1 LTR MaLR -4 370 1 6 1129 218 217 0 0 chr1 71429551 71429597 -125765835 + MIRc SINE MIR 173 218 -50 6 1129 692 331 37 55 chr1 71430681 71431007 -125764425 + LTR82B Low_complexity ERVL 498 817 -13 6 1129 187 143 0 0 chr1 71432509 71432537 -125762895 - L2c LINE L2 -10 3377 3350 6 1130 477 289 133 0 chr1 71434473 71434601 -125760831 + B3A SINE B2 1 145 -53 6 1130 426 39 0 0 chr1 71435279 71435331 -125760101 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1130 698 256 7 42 chr1 71435357 71435475 -125759957 + B1_Mur2 SINE Alu 1 118 -31 6 1130 3449 28 2 0 chr1 71435475 71435870 -125759562 + MTA_Mm LTR MaLR 1 396 0 6 1130 698 256 7 42 chr1 71435870 71435894 -125759538 + B1_Mur2 SINE Alu 119 138 -11 6 1130 207 205 0 0 chr1 71435895 71435934 -125759498 + (ATG)n Simple_repeat Simple_repeat 2 40 0 6 1130 204 328 0 0 chr1 71436192 71436250 -125759182 - L2a LINE L2 0 3426 3369 6 1130 195 254 36 0 chr1 71436450 71436505 -125758927 - L2a LINE L2 -9 3417 3361 6 1130 847 270 9 33 chr1 71436751 71436962 -125758470 + B3 SINE B2 1 206 -10 6 1130 1019 306 60 11 chr1 71436974 71437321 -125758111 + MLT1F LTR MaLR 152 515 -33 6 1130 271 284 10 5 chr1 71438673 71438886 -125756546 + (TG)n Simple_repeat Simple_repeat 1 214 0 6 1130 21 0 0 0 chr1 71438964 71438985 -125756447 + AT_rich Low_complexity Low_complexity 1 21 0 6 1130 22 56 0 0 chr1 71439017 71439053 -125756379 + AT_rich Low_complexity Low_complexity 1 36 0 6 1130 413 272 103 37 chr1 71439297 71439511 -125755921 - MER96B DNA hAT -186 231 4 6 1130 521 281 18 24 chr1 71441694 71441862 -125753570 - RLTR11B LTR ERVK 0 453 287 6 1130 780 295 23 75 chr1 71441875 71442028 -125753404 - RLTR11B LTR ERVK -123 330 194 6 1130 195 69 0 0 chr1 71442028 71442057 -125753375 + (CCCA)n Simple_repeat Simple_repeat 4 32 0 6 1130 780 295 23 75 chr1 71442057 71442251 -125753181 - RLTR11B LTR ERVK -260 193 1 6 1130 235 341 80 43 chr1 71442656 71442843 -125752589 - L2 LINE L2 -690 2729 2536 6 1130 635 140 0 105 chr1 71443393 71443545 -125751887 - Lx2B LINE L1 -2 6998 6863 6 1130 910 174 7 0 chr1 71445146 71445295 -125750137 + B1_Mur4 SINE Alu 1 150 0 6 1130 798 176 17 6 chr1 71445312 71445489 -125749943 + GA-rich Low_complexity Low_complexity 2 180 0 6 1130 257 290 130 9 chr1 71445542 71445650 -125749782 + MIR SINE MIR 30 150 -112 6 1130 386 307 63 42 chr1 71447761 71447904 -125747528 - PB1D10 SINE Alu -3 146 1 6 1130 289 335 119 12 chr1 71448868 71449028 -125746404 + L2c LINE L2 3200 3376 -11 6 1130 440 224 125 81 chr1 71449101 71449237 -125746195 + RSINE1 SINE B4 2 143 -22 6 1130 429 81 0 0 chr1 71449257 71449319 -125746113 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1130 385 294 29 7 chr1 71449369 71449506 -125745926 + B1F SINE Alu 1 140 -9 6 1130 370 311 29 7 chr1 71450069 71450205 -125745227 - MER5A1 DNA MER1_type -5 161 23 6 1130 504 313 129 55 chr1 71450293 71450712 -125744720 + Charlie4a DNA MER1_type 24 473 -35 6 1130 21 57 0 0 chr1 71451370 71451405 -125744027 + AT_rich Low_complexity Low_complexity 1 35 0 6 1130 259 61 40 20 chr1 71452370 71452420 -125743012 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1130 1018 259 214 17 chr1 71452485 71452831 -125742601 + MTD LTR MaLR 6 419 0 6 1130 688 254 14 0 chr1 71452859 71452997 -125742435 + B1_Mur1 SINE Alu 5 144 -5 6 1130 237 33 0 0 chr1 71453226 71453256 -125742176 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 6 1130 325 325 97 34 chr1 71456068 71456243 -125739189 - L3 LINE CR1 -85 4404 4219 6 1130 620 318 7 0 chr1 71456350 71456501 -125738931 + RSINE1 SINE B4 10 161 -4 6 1130 213 39 0 0 chr1 71456537 71456563 -125738869 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1130 216 317 130 24 chr1 71456727 71456850 -125738582 - MIR SINE MIR -122 140 5 6 1130 192 298 0 34 chr1 71456862 71456921 -125738511 - L3 LINE CR1 -535 3954 3898 6 1130 206 207 48 21 chr1 71458575 71458650 -125736782 + MIRb SINE MIR 55 125 -83 6 1130 1027 133 36 36 chr1 71458896 71458931 -125736501 - B2_Mm2 SINE B2 0 195 157 6 1130 180 0 0 0 chr1 71458931 71458951 -125736481 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1130 1027 133 36 36 chr1 71458951 71459110 -125736322 - B2_Mm2 SINE B2 -39 156 1 6 1130 211 155 49 49 chr1 71460427 71460488 -125734944 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 6 1130 234 143 0 0 chr1 71460996 71461045 -125734387 + (C)n Simple_repeat Simple_repeat 1 49 0 6 1130 423 224 4 36 chr1 71463781 71463893 -125731539 + B1_Mur2 SINE Alu 17 149 0 6 1130 240 111 0 0 chr1 71463893 71463938 -125731494 + (CAAAAA)n Simple_repeat Simple_repeat 6 50 0 6 1130 181 356 110 0 chr1 71464589 71464707 -125730725 + MIRm SINE MIR 142 272 -4 6 1130 603 0 0 0 chr1 71464913 71464980 -125730452 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1130 197 98 24 0 chr1 71464982 71465023 -125730409 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 6 1130 260 310 109 45 chr1 71465910 71466141 -125729291 - MIRb SINE MIR 0 268 21 6 1130 480 89 0 25 chr1 71469330 71469411 -125726021 - L1Md_F2 LINE L1 -12 6570 6492 6 1130 591 201 0 0 chr1 71470386 71470530 -125724902 + (TA)n Simple_repeat Simple_repeat 1 144 0 6 1130 21 0 0 0 chr1 71470549 71470570 -125724862 + AT_rich Low_complexity Low_complexity 1 21 0 6 1130 234 247 22 66 chr1 71472134 71472225 -125723207 + L1_Rod LINE L1 2570 2656 -3191 6 1130 489 291 163 19 chr1 71472227 71472544 -125722888 + L1M2 LINE L1 2695 3056 -3090 6 1130 514 286 66 10 chr1 71472599 71472903 -125722529 + L1M2 LINE L1 3046 3366 -2777 6 1130 346 338 43 14 chr1 71472929 71473067 -125722365 + L1M2 LINE L1 4104 4245 -1898 6 1130 1948 224 62 93 chr1 71473078 71473322 -125722110 - RLTR31_Mm LTR ERVK 0 584 325 6 1130 2676 67 3 0 chr1 71473322 71473667 -125721765 + L1_Mus1 LINE L1 6222 6567 0 6 1130 1948 173 35 8 chr1 71473667 71474032 -125721400 - RLTR31_Mm LTR ERVK -193 368 2 6 1130 231 314 96 17 chr1 71474035 71474265 -125721167 + L1M2 LINE L1 4240 4487 -1656 6 1130 728 224 295 54 chr1 71475021 71475299 -125720133 - MTD LTR MaLR -54 365 21 6 1130 3694 168 101 65 chr1 71476014 71476840 -125718592 + RLTR25B LTR ERVK 2 856 -172 7 1130 717 197 138 88 chr1 71477159 71477398 -125718034 + RLTR25B LTR ERVK 853 1103 0 7 1130 646 236 57 5 chr1 71478055 71478247 -125717185 - L1MC4a LINE L1 -608 7274 7073 7 1130 431 113 0 14 chr1 71478366 71478438 -125716994 + (TTG)n Simple_repeat Simple_repeat 2 72 0 7 1130 592 258 132 30 chr1 71478442 71478746 -125716686 - L1MC1 LINE L1 -292 6041 5707 7 1130 345 296 206 29 chr1 71479024 71479227 -125716205 + RMER15 LTR ERVL 324 562 -13 7 1130 977 269 102 35 chr1 71479230 71479931 -125715501 - L1MC1 LINE L1 -624 5709 4953 7 1130 345 47 0 0 chr1 71479931 71479974 -125715458 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1130 977 256 65 51 chr1 71479974 71480065 -125715367 - L1MC1 LINE L1 -1194 4952 4861 7 1130 315 0 0 0 chr1 71480105 71480140 -125715292 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1130 375 78 0 0 chr1 71480139 71480190 -125715242 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1130 221 130 0 42 chr1 71480191 71480239 -125715193 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 7 1130 233 216 108 0 chr1 71480244 71480318 -125715114 + RLTR22_Mur LTR ERVK 1307 1388 -460 7 1130 1215 193 17 0 chr1 71480318 71480551 -125714881 + Lx9 LINE L1 6370 6606 -1038 7 1130 1556 125 203 0 chr1 71480551 71480832 -125714600 + ORR1A2 LTR MaLR 1 338 -8 7 1130 9289 132 83 19 chr1 71480836 71482515 -125712917 + ORR1A2-int LTR MaLR 1 1786 -177 7 1130 1652 97 25 0 chr1 71482515 71482753 -125712679 + ORR1A2 LTR MaLR 80 323 -4 7 1130 1278 71 18 0 chr1 71482755 71482923 -125712509 + ORR1A3 LTR MaLR 148 318 -8 7 1130 1031 263 4 0 chr1 71482923 71483170 -125712262 + Lx9 LINE L1 6598 6845 -799 7 1130 1602 245 79 28 chr1 71483168 71483562 -125711870 + Lx9 LINE L1 7104 7515 -129 7 1130 234 62 0 0 chr1 71483562 71483594 -125711838 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1130 1602 245 79 28 chr1 71483594 71483707 -125711725 + Lx9 LINE L1 7516 7637 -7 7 1130 367 310 58 100 chr1 71484099 71484289 -125711143 - B3A SINE B2 -16 182 1 7 1130 264 333 14 0 chr1 71484591 71484663 -125710769 + ID_B1 SINE B4 118 190 -34 7 1130 816 326 90 27 chr1 71484731 71485321 -125710111 - Lx9 LINE L1 -34 7610 6984 7 1130 321 26 0 0 chr1 71485492 71485530 -125709902 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1130 255 297 47 0 chr1 71485640 71485704 -125709728 + BC1_Mm scRNA scRNA 4 70 -82 7 1130 489 267 0 0 chr1 71486029 71486134 -125709298 - PB1D10 SINE Alu -12 105 1 7 1130 1657 190 87 14 chr1 71486137 71486484 -125708948 - ORR1D1 LTR MaLR 0 374 3 7 1130 441 129 0 0 chr1 71487566 71487636 -125707796 + (TCC)n Simple_repeat Simple_repeat 1 70 0 7 1130 246 292 0 27 chr1 71487636 71487710 -125707722 - PB1D10 SINE Alu -8 109 38 7 1130 261 354 84 8 chr1 71488024 71488155 -125707277 + L2a LINE L2 3284 3424 -2 7 1130 613 261 81 15 chr1 71489436 71489637 -125705795 - MLT1F1 LTR MaLR -17 636 403 7 1130 299 190 88 20 chr1 71489742 71489844 -125705588 + (TATATG)n Simple_repeat Simple_repeat 4 112 0 7 1130 606 352 109 69 chr1 71490512 71491100 -125704332 + HAL1 LINE L1 1203 1803 -704 7 1130 1170 138 113 0 chr1 71491100 71491303 -125704129 - URR1A DNA MER1_type 0 226 1 7 1130 606 352 109 69 chr1 71491303 71491441 -125703991 + HAL1 LINE L1 1804 1957 -550 7 1130 226 244 223 43 chr1 71492861 71492955 -125702477 - MamRep605 Unknown Unknown -339 537 427 7 1130 203 194 0 0 chr1 71493202 71493238 -125702194 + T-rich Low_complexity Low_complexity 1 36 0 7 1130 787 340 29 40 chr1 71494022 71494467 -125700965 - MamRep137 DNA TcMar? 0 444 5 7 1130 742 165 63 0 chr1 71494576 71494703 -125700729 - B1_Mur4 SINE Alu -7 143 9 7 1130 273 236 123 80 chr1 71494613 71494751 -125700681 - MT2B LTR ERVL -343 258 115 7 1130 239 226 232 61 chr1 71494771 71494870 -125700562 + PB1D10 SINE Alu 1 116 -1 7 1130 490 269 15 37 chr1 71495356 71495491 -125699941 - RSINE1 SINE B4 -33 132 1 7 1130 736 299 40 38 chr1 71495613 71496083 -125699349 + L1ME1 LINE L1 5547 6017 -162 7 1130 348 291 48 0 chr1 71496198 71496301 -125699131 + PB1D10 SINE Alu 1 108 -9 7 1130 1246 108 0 63 chr1 71496645 71496852 -125698580 + B2_Mm2 SINE B2 1 194 -1 7 1130 31 26 0 0 chr1 71497332 71497370 -125698062 + AT_rich Low_complexity Low_complexity 1 38 0 7 1130 8532 8 2 0 chr1 71497875 71499034 -125696398 - L1Md_T LINE L1 0 6582 5422 7 1130 725 245 71 50 chr1 71499285 71499483 -125695949 + B4A SINE B4 1 202 -90 7 1130 288 200 0 0 chr1 71499540 71499640 -125695792 + GA-rich Low_complexity Low_complexity 1 100 0 7 1130 256 215 19 97 chr1 71499699 71499802 -125695630 - RMER1C Other Other -4 1338 1244 7 1130 295 136 139 46 chr1 71499718 71499826 -125695606 - Lx8 LINE L1 -3 7470 7353 7 1130 295 236 14 0 chr1 71499884 71499956 -125695476 - Lx8 LINE L1 -224 7249 7177 7 1130 210 272 0 102 chr1 71500193 71500305 -125695127 + L2a LINE L2 3270 3371 -55 1 1130 297 0 0 0 chr1 71500305 71500338 -125695094 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1130 210 272 0 102 chr1 71500338 71500352 -125695080 + L2a LINE L2 3372 3383 -43 1 1130 1355 273 59 39 chr1 71500363 71500531 -125694901 + RMER5 LTR ERV1 34 202 -332 3 1130 207 0 0 0 chr1 71500531 71500554 -125694878 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1130 1355 273 59 39 chr1 71500554 71500876 -125694556 + RMER5 LTR ERV1 203 533 -1 3 1130 193 22 109 0 chr1 71501801 71501847 -125693585 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 1130 796 301 58 85 chr1 71502161 71502539 -125692893 + MTE2a LTR MaLR 1 368 -11 6 1130 335 331 6 59 chr1 71503295 71503465 -125691967 + RSINE1 SINE B4 5 165 0 7 1130 1915 188 174 39 chr1 71503553 71504019 -125691413 - RLTR24 LTR ERV1 0 529 1 8 1130 653 261 74 37 chr1 71504021 71504264 -125691168 + MLT2C1 LTR ERVL 18 269 -128 9 1130 204 254 60 0 chr1 71504269 71504336 -125691096 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 1 1130 362 273 118 0 chr1 71504348 71504458 -125690974 - MER82 DNA MER2_type 0 653 531 1 1130 213 163 0 0 chr1 71505105 71505154 -125690278 + CT-rich Low_complexity Low_complexity 2 50 0 1 1130 1258 97 51 6 chr1 71505234 71505410 -125690022 + B2_Mm2 SINE B2 2 185 -10 1 1130 375 281 13 35 chr1 71505527 71505645 -125689787 - PB1D10 SINE Alu 0 127 3 1 1130 22 35 0 0 chr1 71505714 71505743 -125689689 + AT_rich Low_complexity Low_complexity 1 29 0 1 1130 228 219 121 12 chr1 71506085 71506168 -125689264 + L2b LINE L2 3038 3129 -246 1 1130 1197 205 5 0 chr1 71506379 71506594 -125688838 - B3 SINE B2 0 216 1 1 1130 211 328 0 0 chr1 71508752 71508810 -125686622 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1130 455 279 16 16 chr1 71508939 71509063 -125686369 + RSINE1 SINE B4 2 125 -40 1 1130 823 52 17 8 chr1 71509113 71509230 -125686202 + (GGGA)n Simple_repeat Simple_repeat 1 118 0 2 1130 275 213 31 174 chr1 71509941 71510078 -125685354 + PB1D10 SINE Alu 5 129 -20 2 1130 207 167 0 0 chr1 71510119 71510161 -125685271 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1130 975 125 11 11 chr1 71510946 71511124 -125684308 + (TCTCCC)n Simple_repeat Simple_repeat 2 179 0 2 1130 336 299 113 28 chr1 71511782 71511995 -125683437 - Tigger7 DNA MER2_type -101 238 3 2 1130 537 307 43 30 chr1 71512036 71512271 -125683161 - 7SK RNA RNA -92 239 2 2 1130 487 267 0 19 chr1 71512447 71512554 -125682878 - PB1D10 SINE Alu 0 117 13 2 1130 396 280 10 48 chr1 71512471 71512575 -125682857 - ID_B1 SINE B4 -48 176 81 2 1130 298 289 62 0 chr1 71514051 71514148 -125681284 - 7SK RNA RNA -204 127 25 2 1130 202 188 0 0 chr1 71514590 71514622 -125680810 + polypurine Low_complexity Low_complexity 2 33 0 2 1130 203 220 20 0 chr1 71515486 71515536 -125679896 + A-rich Low_complexity Low_complexity 5 55 0 3 1130 1098 123 0 0 chr1 71515599 71515770 -125679662 + (ATG)n Simple_repeat Simple_repeat 2 172 0 3 1130 576 186 0 0 chr1 71516656 71516774 -125678658 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 1130 252 323 36 95 chr1 71516923 71517060 -125678372 - B4 SINE B4 -113 179 51 3 1130 320 359 86 0 chr1 71517350 71517478 -125677954 - MIR SINE MIR -91 171 33 3 1130 1083 193 42 37 chr1 71517537 71517712 -125677720 + B3 SINE B2 1 182 -34 3 1130 560 77 29 9 chr1 71517712 71517817 -125677615 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 3 1130 6348 74 62 16 chr1 71517817 71518668 -125676764 + RLTR13B1 LTR ERVK 3 892 -1 3 1130 630 0 0 0 chr1 71518668 71518738 -125676694 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 3 1130 1083 193 42 37 chr1 71518738 71518775 -125676657 + B3 SINE B2 183 214 -2 3 1130 811 135 259 0 chr1 71519589 71519759 -125675673 - URR1A DNA MER1_type -12 214 1 3 1130 246 233 0 0 chr1 71519787 71519847 -125675585 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1130 437 277 44 22 chr1 71519878 71520059 -125675373 + LTR37A LTR ERV1 230 414 -12 4 1130 264 241 0 17 chr1 71520118 71520177 -125675255 - PB1D10 SINE Alu -5 112 55 4 1130 307 248 16 78 chr1 71520589 71520689 -125674743 + B1F SINE Alu 52 149 0 4 1130 267 256 38 25 chr1 71521329 71521409 -125674023 - ID4_ SINE ID 0 83 3 4 1130 322 238 79 79 chr1 71521561 71521675 -125673757 - PB1D10 SINE Alu -1 116 3 4 1130 280 315 22 0 chr1 71521764 71521853 -125673579 - RMER12 LTR ERVK -131 1191 1101 4 1130 522 0 0 0 chr1 71522099 71522157 -125673275 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1130 5475 97 6 8 chr1 71522157 71522956 -125672476 - RLTR22_Mus LTR ERVK -1010 798 1 4 1130 1382 86 23 0 chr1 71523064 71523239 -125672193 + B2_Mm2 SINE B2 2 180 -15 4 1130 333 161 324 9 chr1 71523268 71523379 -125672053 + B2_Mm2 SINE B2 47 192 -3 5 1130 508 307 67 36 chr1 71523728 71524059 -125671373 + L1ME3B LINE L1 4010 4350 -1796 5 1130 636 299 123 31 chr1 71524084 71524595 -125670837 + L1ME3B LINE L1 4419 4976 -1170 5 1130 789 326 5 0 chr1 71524605 71524798 -125670634 + ID_B1 SINE B4 1 194 -30 5 1130 666 233 91 91 chr1 71524933 71525131 -125670301 + B3A SINE B2 1 198 0 5 1130 350 282 161 18 chr1 71525266 71525483 -125669949 + L1ME3B LINE L1 5259 5506 -734 5 1130 582 359 39 16 chr1 71525649 71526034 -125669398 + Lx7 LINE L1 6942 7335 -361 5 1130 200 227 0 0 chr1 71526070 71526114 -125669318 + T-rich Low_complexity Low_complexity 1 44 0 5 1130 229 237 40 95 chr1 71526124 71526250 -125669182 + Lx7 LINE L1 7578 7696 0 5 1130 1012 258 14 0 chr1 71526288 71526497 -125668935 + B3 SINE B2 1 212 -4 5 1130 22 0 0 0 chr1 71526546 71526568 -125668864 + AT_rich Low_complexity Low_complexity 1 22 0 5 1130 277 326 54 0 chr1 71526629 71526721 -125668711 + B1F2 SINE Alu 1 97 -52 5 1130 1201 265 38 106 chr1 71526748 71526860 -125668572 + RLTR12B LTR ERVK 47 158 -370 6 1130 1506 79 0 11 chr1 71526860 71527051 -125668381 + B2_Mm2 SINE B2 1 189 -6 6 1130 1201 265 38 106 chr1 71527051 71527410 -125668022 + RLTR12B LTR ERVK 159 485 -43 6 1130 569 14 14 0 chr1 71527460 71527530 -125667902 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 6 1130 373 341 72 26 chr1 71527585 71527850 -125667582 + L1ME3B LINE L1 5651 5927 -313 5 1130 459 268 180 7 chr1 71528549 71528688 -125666744 + RSINE1 SINE B4 3 165 0 6 1130 2338 103 3 41 chr1 71528761 71529105 -125666327 + Lx LINE L1 6322 6652 -2 6 1130 646 195 49 0 chr1 71529563 71529686 -125665746 + RSINE1 SINE B4 2 130 -35 6 1130 234 0 0 0 chr1 71529688 71529714 -125665718 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1130 942 84 13 15 chr1 71530090 71530260 -125665172 - B2_Mm2 SINE B2 -6 187 19 6 1130 261 57 0 0 chr1 71531914 71531949 -125663483 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1130 620 284 42 5 chr1 71531952 71532143 -125663289 - B4A SINE B4 -22 270 73 6 1130 212 317 17 0 chr1 71532200 71532260 -125663172 - B4A SINE B4 -231 61 1 6 1130 554 295 19 31 chr1 71532957 71533047 -125662385 + RSINE1 SINE B4 7 95 -70 7 1130 2899 159 10 92 chr1 71533047 71533623 -125661809 + RLTR24 LTR ERV1 1 529 0 7 1130 554 295 19 31 chr1 71533623 71533693 -125661739 + RSINE1 SINE B4 96 165 0 7 1130 23 33 0 0 chr1 71533704 71533734 -125661698 + AT_rich Low_complexity Low_complexity 1 30 0 7 1130 1004 307 103 29 chr1 71534507 71534539 -125660893 - L1MC4 LINE L1 -107 7935 7899 7 1130 441 0 0 0 chr1 71534539 71534588 -125660844 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1130 1004 307 103 29 chr1 71534588 71534909 -125660523 - L1MC4 LINE L1 -144 7898 7562 7 1130 195 42 0 0 chr1 71534909 71534933 -125660499 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1130 1004 307 103 29 chr1 71534933 71535132 -125660300 - L1MC4 LINE L1 -481 7561 7342 7 1130 1040 119 6 0 chr1 71535787 71535964 -125659468 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 7 1130 270 0 0 0 chr1 71536230 71536260 -125659172 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1130 32 43 0 0 chr1 71536681 71536727 -125658705 + AT_rich Low_complexity Low_complexity 1 46 0 7 1130 439 254 69 0 chr1 71537439 71537569 -125657863 + RMER15 LTR ERVL 423 561 -14 7 1130 237 182 0 0 chr1 71537577 71537621 -125657811 - L1M5 LINE L1 -2679 3467 3424 8 1130 6026 109 31 13 chr1 71537878 71538741 -125656691 - Lx3C LINE L1 0 6976 6098 8 1130 329 268 61 68 chr1 71540842 71540990 -125654442 + B1F1 SINE Alu 3 149 0 8 1130 1142 243 22 34 chr1 71541477 71541745 -125653687 + B4 SINE B4 3 267 -25 8 1130 498 33 0 0 chr1 71541748 71541808 -125653624 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1130 189 0 0 0 chr1 71542042 71542063 -125653369 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1130 327 286 67 150 chr1 71542111 71542249 -125653183 + L1MB2 LINE L1 5355 5480 -691 8 1130 766 277 71 78 chr1 71542249 71542543 -125652889 + B4A SINE B4 1 292 0 8 1130 369 279 56 75 chr1 71542543 71542750 -125652682 + L1MB2 LINE L1 5476 5671 -500 8 1130 593 274 30 0 chr1 71542750 71542885 -125652547 + ID_B1 SINE B4 86 224 0 8 1130 274 264 55 14 chr1 71542949 71543022 -125652410 + ID SINE ID 3 78 -146 8 1130 610 162 6 22 chr1 71543071 71543254 -125652178 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1130 192 77 0 0 chr1 71543303 71543329 -125652103 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1130 1041 294 75 16 chr1 71543346 71543774 -125651658 + L1MB2 LINE L1 5715 6167 -4 8 1130 663 232 14 35 chr1 71544456 71544599 -125650833 + B1_Mur1 SINE Alu 10 149 0 9 1130 2900 239 52 27 chr1 71544659 71545341 -125650091 - RCHARR1 DNA MER1_type -49 925 229 9 1130 1835 51 0 0 chr1 71545341 71545555 -125649877 + L1Md_T LINE L1 6369 6582 0 9 1130 2900 239 52 27 chr1 71545555 71545693 -125649739 - RCHARR1 DNA MER1_type -746 228 84 9 1130 673 277 0 0 chr1 71545708 71545845 -125649587 + RSINE1 SINE B4 4 140 -25 9 1130 213 121 0 0 chr1 71545845 71545878 -125649554 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1130 1239 254 34 51 chr1 71545902 71546320 -125649112 + MTE2a LTR MaLR 1 418 -1 9 1130 238 354 9 94 chr1 71546972 71547028 -125648404 + ID_B1 SINE B4 35 131 -93 9 1130 271 280 0 0 chr1 71547028 71547078 -125648354 + PB1D10 SINE Alu 1 50 -67 9 1130 336 48 0 0 chr1 71547082 71547124 -125648308 + (GGA)n Simple_repeat Simple_repeat 2 43 0 9 1130 606 28 0 0 chr1 71548682 71548754 -125646678 + (TTGG)n Simple_repeat Simple_repeat 4 75 0 1 1130 414 0 0 0 chr1 71548757 71548803 -125646629 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 1 1130 625 133 81 32 chr1 71548803 71548927 -125646505 - B1_Mur3 SINE Alu -3 146 17 1 1130 231 207 30 130 chr1 71548841 71548941 -125646491 - MT2B2 LTR ERVL -327 257 168 1 1130 229 269 14 43 chr1 71549097 71549109 -125646323 - B1F2 SINE Alu -80 69 2 1 1130 237 224 138 0 chr1 71549109 71549167 -125646265 - ID_B1 SINE B4 -140 152 84 1 1130 429 20 0 0 chr1 71549981 71550031 -125645401 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1130 591 15 0 0 chr1 71550056 71550124 -125645308 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 1 1130 669 182 135 0 chr1 71550128 71550254 -125645178 - B1_Mur2 SINE Alu -6 143 1 1 1130 621 312 66 4 chr1 71550888 71551198 -125644234 + L1MA4 LINE L1 5707 6032 -268 1 1130 273 57 0 0 chr1 71552358 71552393 -125643039 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 1 1130 1141 106 0 11 chr1 71552393 71552575 -125642857 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1130 21 36 0 0 chr1 71553626 71553654 -125641778 + AT_rich Low_complexity Low_complexity 1 28 0 1 1130 24 0 0 0 chr1 71554370 71554394 -125641038 + AT_rich Low_complexity Low_complexity 1 24 0 1 1130 213 304 0 28 chr1 71554603 71554674 -125640758 - RSINE1 SINE B4 -96 69 1 1 1130 225 0 0 0 chr1 71555010 71555035 -125640397 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1130 490 242 144 67 chr1 71555131 71555163 -125640269 - ID_B1 SINE B4 0 224 202 1 1130 2194 145 44 73 chr1 71555163 71555573 -125639859 + RMER10B LTR ERVL 1 398 0 1 1130 490 242 144 67 chr1 71555573 71555748 -125639684 - ID_B1 SINE B4 -23 201 1 1 1130 1042 233 108 4 chr1 71555806 71556047 -125639385 - MTD LTR MaLR -91 328 63 1 1130 1061 172 10 45 chr1 71556445 71556694 -125638738 - ORR1D1 LTR MaLR -2 372 134 1 1130 1217 178 78 56 chr1 71556698 71556966 -125638466 + MERVL_2A-int LTR ERVL 4974 5247 -514 1 1130 415 254 145 0 chr1 71557213 71557351 -125638081 - MLT1D LTR MaLR -3 502 345 1 1130 321 294 31 78 chr1 71557799 71557991 -125637441 - RLTR23 LTR ERV1 -4 426 244 1 1130 924 320 30 57 chr1 71558965 71559436 -125635996 + Lx7 LINE L1 6855 7312 -384 1 1130 243 309 0 20 chr1 71559482 71559581 -125635851 + RMER1C Other Other 1246 1342 0 1 1130 424 234 41 34 chr1 71560525 71560671 -125634761 + B1F SINE Alu 3 149 0 1 1130 258 152 0 0 chr1 71561160 71561219 -125634213 + GA-rich Low_complexity Low_complexity 4 62 0 1 1130 717 262 86 127 chr1 71561503 71561944 -125633488 - RLTR23 LTR ERV1 0 430 8 1 1130 514 276 24 52 chr1 71561967 71562160 -125633272 + B3A SINE B2 14 186 -30 1 1130 254 218 0 0 chr1 71562283 71562338 -125633094 - B3 SINE B2 -9 207 153 1 1130 261 143 0 0 chr1 71563036 71563078 -125632354 - L1ME4a LINE L1 -4 6120 6079 1 1130 1378 261 7 0 chr1 71563168 71563471 -125631961 + MTE2b LTR MaLR 1 305 -74 1 1130 314 244 0 11 chr1 71563567 71563658 -125631774 + MTE2b LTR MaLR 290 379 0 1 1130 215 387 16 36 chr1 71563867 71564060 -125631372 + MIRb SINE MIR 42 230 -38 1 1130 321 245 181 0 chr1 71564214 71564308 -125631124 + PB1D10 SINE Alu 1 111 -6 1 1130 870 148 17 13 chr1 71564604 71564837 -125630595 + (TGGA)n Simple_repeat Simple_repeat 1 234 0 1 1130 253 260 47 19 chr1 71564837 71564943 -125630489 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 1 141 360 302 112 12 chr1 71565221 71565382 -125630050 + MLT1B LTR MaLR 1 177 -213 1 1131 293 164 0 29 chr1 71565383 71565452 -125629980 + CT-rich Low_complexity Low_complexity 3 69 0 1 1131 422 238 120 17 chr1 71565500 71565675 -125629757 + MLT1B LTR MaLR 198 390 0 1 1131 569 45 80 22 chr1 71565748 71565886 -125629546 + (GTTTG)n Simple_repeat Simple_repeat 5 150 0 1 1131 1038 92 43 0 chr1 71565889 71566030 -125629402 - B1_Mus1 SINE Alu 0 148 2 1 1131 247 320 75 62 chr1 71566205 71566222 -125629210 + L1ME3A LINE L1 5441 5454 -719 1 1131 400 301 44 25 chr1 71566222 71566382 -125629050 + RSINE1 SINE B4 3 165 0 1 1131 247 320 75 62 chr1 71566382 71566524 -125628908 + L1ME3A LINE L1 5455 5602 -571 1 1131 537 302 81 50 chr1 71566677 71566938 -125628494 + B4A SINE B4 3 271 -21 1 1131 910 288 30 67 chr1 71567022 71567383 -125628049 + L1ME3A LINE L1 5803 6150 -23 1 1131 181 119 48 0 chr1 71567383 71567425 -125628007 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1131 420 20 0 0 chr1 71567824 71567873 -125627559 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1131 477 159 0 0 chr1 71567889 71567958 -125627474 - ID4_ SINE ID -10 73 5 1 1131 533 292 83 21 chr1 71568331 71568572 -125626860 - MLT1C LTR MaLR -19 448 193 1 1131 426 281 53 30 chr1 71568635 71568804 -125626628 - MLT1C LTR MaLR -286 181 9 1 1131 180 0 0 0 chr1 71569256 71569276 -125626156 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1131 396 88 0 0 chr1 71569785 71569842 -125625590 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1131 2524 130 2 18 chr1 71569842 71570282 -125625150 - RMER6A LTR ERVK 0 756 324 1 1131 533 15 0 0 chr1 71570281 71570348 -125625084 + MTB_Mm LTR MaLR 341 407 0 1 1131 1778 119 44 3 chr1 71571049 71571345 -125624087 + MTC LTR MaLR 1 308 -113 1 1131 258 32 0 0 chr1 71571508 71571539 -125623893 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1131 252 272 53 99 chr1 71571711 71571862 -125623570 + MamSINE1 SINE tRNA 89 232 -58 1 1131 980 186 101 19 chr1 71572145 71572353 -125623079 - URR1A DNA MER1_type 0 226 2 1 1131 245 230 0 13 chr1 71572465 71572540 -125622892 + C-rich Low_complexity Low_complexity 4 77 0 1 1131 248 224 34 34 chr1 71572787 71572803 -125622629 - B4A SINE B4 -199 93 6 1 1131 354 169 0 14 chr1 71572803 71572875 -125622557 - ID4_ SINE ID -7 76 6 1 1131 319 287 9 0 chr1 71573997 71574131 -125621301 + L1MA5 LINE L1 6082 6218 -82 1 1131 309 217 0 0 chr1 71574207 71574276 -125621156 + B3A SINE B2 1 69 -129 1 1131 216 188 0 0 chr1 71574457 71574505 -125620927 + T-rich Low_complexity Low_complexity 2 49 0 1 1131 196 349 0 46 chr1 71574507 71574594 -125620838 - L2 LINE L2 -795 2624 2542 1 1131 332 255 138 0 chr1 71574950 71575044 -125620388 + PB1D10 SINE Alu 1 107 -10 1 1131 21 82 0 0 chr1 71575326 71575375 -125620057 + AT_rich Low_complexity Low_complexity 1 49 0 1 1131 462 323 30 6 chr1 71575612 71575780 -125619652 - MLT1F1 LTR MaLR -17 552 381 1 1131 1351 304 89 85 chr1 71575780 71576748 -125618684 + RCHARR1 DNA MER1_type 2 973 -1 1 1131 187 214 24 0 chr1 71577364 71577406 -125618026 + L2c LINE L2 3344 3386 -1 1 1131 231 36 0 0 chr1 71577945 71577973 -125617459 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1131 26054 25 0 0 chr1 71578627 71581646 -125613786 + L1Md_T LINE L1 2568 5586 -297 1 1131 9110 7 0 3 chr1 71581646 71582645 -125612787 + L1Md_T LINE L1 5587 6582 0 1 1131 342 0 0 0 chr1 71582664 71582702 -125612730 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1131 333 0 0 0 chr1 71582858 71582895 -125612537 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1131 333 250 50 0 chr1 71583095 71583175 -125612257 - PB1D10 SINE Alu -10 107 24 1 1131 292 333 128 0 chr1 71583227 71583344 -125612088 + ID_B1 SINE B4 82 213 -11 1 1131 481 282 17 2 chr1 71583395 71583528 -125611904 + PB1D9 SINE Alu 7 147 -2 1 1131 180 0 0 0 chr1 71584221 71584241 -125611191 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1131 668 288 34 14 chr1 71584715 71584923 -125610509 + B3 SINE B2 4 215 -1 1 1131 360 43 0 0 chr1 71584960 71585006 -125610426 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1131 570 304 18 6 chr1 71585085 71585254 -125610178 - ID_B1 SINE B4 -3 221 51 1 1131 261 0 0 0 chr1 71585266 71585295 -125610137 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1131 435 19 0 0 chr1 71585295 71585346 -125610086 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1131 207 100 0 0 chr1 71585515 71585545 -125609887 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1 1131 306 0 0 0 chr1 71586101 71586135 -125609297 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1131 338 344 78 22 chr1 71587117 71587385 -125608047 + L2 LINE L2 1090 1372 -2047 1 1131 185 321 25 67 chr1 71587388 71587508 -125607924 + L2 LINE L2 1947 2061 -1358 1 1131 220 150 0 91 chr1 71587712 71587756 -125607676 - PB1D7 SINE Alu -7 113 74 1 1131 2150 110 24 42 chr1 71587832 71588165 -125607267 - ORR1A2 LTR MaLR 0 327 1 1 1131 1202 77 12 0 chr1 71588410 71588579 -125606853 - B2_Mm2 SINE B2 -23 172 2 1 1131 1122 172 5 14 chr1 71589258 71589465 -125605967 + RLTR20B3 LTR ERVK 2 206 -371 1 1131 27 0 0 0 chr1 71589589 71589616 -125605816 + AT_rich Low_complexity Low_complexity 1 27 0 1 1131 683 125 29 0 chr1 71589616 71589720 -125605712 + MERVL_2A-int LTR ERVL 1664 1770 -3991 1 1131 248 105 0 0 chr1 71589738 71589776 -125605656 - RLTR33 LTR ERVK -640 38 1 1 1131 2858 149 73 24 chr1 71589936 71590347 -125605085 + RLTR20B3 LTR ERVK 1 435 -142 1 1131 2545 178 48 51 chr1 71590347 71590933 -125604499 + RLTR31A_Mm LTR ERVK 1 584 0 1 1131 2858 149 73 24 chr1 71590933 71590976 -125604456 + RLTR20B3 LTR ERVK 436 482 -95 1 1131 216 122 0 0 chr1 71590976 71591017 -125604415 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1131 2858 149 73 24 chr1 71591017 71591111 -125604321 + RLTR20B3 LTR ERVK 483 577 0 1 1131 2232 182 0 16 chr1 71591111 71591496 -125603936 + MERVL_2A-int LTR ERVL 1767 2145 -3616 1 1131 1836 169 23 44 chr1 71591497 71591887 -125603545 + ORR1C2 LTR MaLR 3 384 0 1 1131 1970 162 20 42 chr1 71591887 71592242 -125603190 + MERVL_2A-int LTR ERVL 3268 3614 -2147 1 1131 269 277 45 82 chr1 71592243 71592353 -125603079 + MT2B LTR ERVL 152 257 -344 1 1131 744 188 8 0 chr1 71592259 71592392 -125603040 + B1_Mus1 SINE Alu 9 142 -6 1 1131 8498 170 52 14 chr1 71592426 71593885 -125601547 + MERVL_2A-int LTR ERVL 3597 5110 -651 1 1131 1853 264 102 13 chr1 71593913 71594577 -125600855 - RMER13A LTR ERVK -41 819 195 1 1131 3889 152 15 33 chr1 71594687 71595271 -125600161 + MERVL_2A-int LTR ERVL 5112 5697 -64 1 1131 500 268 41 34 chr1 71595271 71595418 -125600014 - B1_Mur3 SINE Alu -1 148 1 1 1131 3889 152 15 33 chr1 71595418 71595495 -125599937 + MERVL_2A-int LTR ERVL 5698 5761 0 1 1131 1005 225 67 73 chr1 71595495 71595904 -125599528 + MT2A LTR ERVL 1 540 -61 1 1131 391 218 172 52 chr1 71596063 71596179 -125599253 - B3A SINE B2 -67 131 2 1 1131 252 0 0 0 chr1 71596824 71596852 -125598580 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1131 239 306 40 84 chr1 71597569 71597819 -125597613 + L2a LINE L2 2942 3180 -246 2 1131 470 195 74 66 chr1 71598002 71598123 -125597309 - Lx7 LINE L1 -16 7680 7559 2 1131 1257 233 71 89 chr1 71598120 71598515 -125596917 - Lx7 LINE L1 -240 7456 7069 2 1131 611 175 40 88 chr1 71598508 71598633 -125596799 - Lx7 LINE L1 -1026 6670 6552 2 1131 1199 220 144 22 chr1 71598687 71598754 -125596678 - ORR1D2 LTR MaLR -7 363 301 2 1131 2905 156 163 17 chr1 71598754 71599287 -125596145 - RMER19C LTR ERVK 0 611 1 2 1131 1199 220 144 22 chr1 71599287 71599539 -125595893 - ORR1D2 LTR MaLR -70 300 5 2 1131 193 77 50 25 chr1 71599587 71599627 -125595805 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 2 1131 326 316 76 34 chr1 71599627 71599735 -125595697 - PB1D10 SINE Alu -12 115 2 2 1131 1997 174 61 27 chr1 71600075 71600482 -125594950 + MTC LTR MaLR 1 421 0 2 1131 808 56 0 0 chr1 71600945 71601052 -125594380 + B1_Mus2 SINE Alu 41 147 0 2 1131 192 170 0 0 chr1 71601056 71601109 -125594323 + A-rich Low_complexity Low_complexity 1 53 0 2 1131 243 0 0 0 chr1 71601921 71601948 -125593484 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1131 289 208 14 0 chr1 71602209 71602281 -125593151 + B3 SINE B2 139 211 -5 2 1131 294 316 20 50 chr1 71602456 71602556 -125592876 - B1F1 SINE Alu -1 148 52 2 1131 1167 61 7 0 chr1 71602975 71603122 -125592310 + B1_Mus1 SINE Alu 1 148 0 2 1131 325 176 0 13 chr1 71605113 71605188 -125590244 - PB1D10 SINE Alu -9 108 35 2 1131 796 140 73 7 chr1 71605397 71605534 -125589898 - B1_Mur4 SINE Alu 0 150 5 2 1131 675 215 80 70 chr1 71606312 71606512 -125588920 + B3 SINE B2 4 205 -11 2 1131 322 192 63 13 chr1 71606689 71606768 -125588664 - B1F SINE Alu 0 149 67 2 1131 958 97 27 34 chr1 71606849 71606998 -125588434 - B1_Mur3 SINE Alu -1 148 1 2 1131 288 318 34 0 chr1 71607160 71607248 -125588184 + PB1 SINE Alu 24 114 -13 2 1131 602 180 9 0 chr1 71607254 71607365 -125588067 + PB1D9 SINE Alu 9 120 0 2 1131 290 236 12 139 chr1 71607853 71608025 -125587407 - L1MB8 LINE L1 -9 6169 6020 2 1131 231 264 80 62 chr1 71608073 71608186 -125587246 - PB1D10 SINE Alu -2 115 1 2 1131 807 246 123 39 chr1 71608373 71608787 -125586645 - L1M4 LINE L1 -1429 4717 4269 2 1131 241 308 98 15 chr1 71608836 71608968 -125586464 - L1M4 LINE L1 -1964 4182 4040 2 1131 293 267 200 0 chr1 71609132 71609237 -125586195 - RSINE1 SINE B4 -38 127 2 2 1131 24 32 0 0 chr1 71609654 71609685 -125585747 + AT_rich Low_complexity Low_complexity 1 31 0 2 1131 23 33 0 0 chr1 71609772 71609802 -125585630 + AT_rich Low_complexity Low_complexity 1 30 0 2 1131 630 196 186 23 chr1 71609998 71610175 -125585257 + B3 SINE B2 1 206 -10 2 1131 375 210 26 52 chr1 71610504 71610630 -125584802 - PB1 SINE Alu 0 127 1 2 1131 1218 54 0 0 chr1 71610645 71610792 -125584640 + B1_Mus1 SINE Alu 2 148 0 2 1131 1081 182 171 4 chr1 71612174 71612449 -125582983 - RMER15 LTR ERVL 0 575 255 2 1131 228 205 0 0 chr1 71612479 71612518 -125582914 - RMER15 LTR ERVL -448 127 89 2 1131 225 0 0 0 chr1 71613396 71613421 -125582011 + (CTCTG)n Simple_repeat Simple_repeat 4 28 0 2 1131 391 218 173 0 chr1 71613643 71613753 -125581679 - B1_Mur3 SINE Alu -19 130 2 2 1131 717 180 0 0 chr1 71614122 71614244 -125581188 - B1_Mur2 SINE Alu -17 132 11 2 1131 26 0 0 0 chr1 71615121 71615147 -125580285 + GC_rich Low_complexity Low_complexity 1 26 0 2 1131 25 31 0 0 chr1 71615842 71615874 -125579558 + AT_rich Low_complexity Low_complexity 1 32 0 2 1131 1132 85 146 0 chr1 71617669 71617834 -125577598 - B2_Mm2 SINE B2 -6 189 1 2 1131 359 198 54 45 chr1 71617976 71618087 -125577345 - PB1D9 SINE Alu -7 113 2 2 1131 216 271 33 17 chr1 71618628 71618688 -125576744 - ID4_ SINE ID -10 73 13 2 1131 243 292 25 66 chr1 71618664 71618785 -125576647 - B1F SINE Alu -13 136 21 2 1131 1356 79 0 55 chr1 71618793 71618994 -125576438 - B2_Mm2 SINE B2 -5 190 1 2 1131 407 274 37 7 chr1 71619269 71619405 -125576027 - B1F SINE Alu -6 143 4 2 1131 189 0 0 0 chr1 71619865 71619886 -125575546 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1131 1243 21 0 0 chr1 71619894 71620035 -125575397 - B1_Mus1 SINE Alu -6 142 2 2 1131 411 21 0 0 chr1 71620329 71620377 -125575055 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1131 330 233 137 15 chr1 71620513 71620644 -125574788 - L1MEg LINE L1 -5537 547 401 2 1131 234 0 0 0 chr1 71620644 71620670 -125574762 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 2 1131 33 43 0 0 chr1 71621135 71621182 -125574250 + AT_rich Low_complexity Low_complexity 1 47 0 2 1131 396 62 0 15 chr1 71621196 71621261 -125574171 - Lx4A LINE L1 -3 7055 6992 2 1131 235 189 94 0 chr1 71621373 71621426 -125574006 - L1MC LINE L1 -967 5179 5122 2 1131 297 0 0 0 chr1 71621757 71621790 -125573642 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1131 23 0 0 0 chr1 71622013 71622036 -125573396 + AT_rich Low_complexity Low_complexity 1 23 0 2 1131 340 206 153 0 chr1 71622045 71622131 -125573301 - B1_Mur4 SINE Alu -21 99 3 2 1131 34 0 0 0 chr1 71622134 71622168 -125573264 + AT_rich Low_complexity Low_complexity 1 34 0 2 1131 354 23 0 0 chr1 71622931 71622974 -125572458 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1131 890 209 53 34 chr1 71624825 71625033 -125570399 - B3 SINE B2 -2 214 3 2 1131 432 0 0 0 chr1 71625993 71626041 -125569391 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 2 1131 488 213 69 23 chr1 71626041 71626171 -125569261 - B1_Mur3 SINE Alu -12 137 2 2 1131 583 223 37 37 chr1 71627652 71627815 -125567617 - RSINE1 SINE B4 0 165 3 2 1131 1671 36 0 0 chr1 71628615 71628807 -125566625 + B2_Mm1a SINE B2 1 192 -1 2 1131 412 276 31 0 chr1 71628880 71628978 -125566454 + PB1D7 SINE Alu 12 112 -8 2 1131 401 171 14 0 chr1 71629045 71629115 -125566317 + B3A SINE B2 1 71 -127 2 1131 480 48 0 0 chr1 71629122 71629185 -125566247 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1131 440 277 52 33 chr1 71629192 71629345 -125566087 - B3A SINE B2 -39 159 4 2 1131 250 322 0 11 chr1 71629601 71629689 -125565743 - B1F2 SINE Alu -62 87 1 2 1131 465 138 0 0 chr1 71629833 71629913 -125565519 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1131 622 242 101 16 chr1 71629984 71630173 -125565259 - ID_B1 SINE B4 -18 206 2 2 1131 325 278 117 16 chr1 71630175 71630303 -125565129 - B1F1 SINE Alu -6 143 3 2 1131 1114 68 0 63 chr1 71630321 71630333 -125565099 - B1_Mus1 SINE Alu 0 148 140 2 1131 243 0 0 0 chr1 71630333 71630360 -125565072 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1131 1114 68 0 63 chr1 71630360 71630505 -125564927 - B1_Mus1 SINE Alu -9 139 1 2 1131 366 246 175 32 chr1 71630512 71630638 -125564794 - B1F SINE Alu -5 144 1 2 1131 358 140 117 164 chr1 71630960 71631088 -125564344 + ORR1C2 LTR MaLR 1 122 -252 2 1131 539 206 87 0 chr1 71631086 71631212 -125564220 + ORR1C2 LTR MaLR 247 383 -1 2 1131 339 259 212 18 chr1 71631634 71631783 -125563649 + B3 SINE B2 2 172 -26 2 1131 216 0 0 0 chr1 71631786 71631810 -125563622 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1131 501 295 0 76 chr1 71633116 71633274 -125562158 - B4 SINE B4 -91 201 56 2 1131 207 0 0 0 chr1 71634298 71634321 -125561111 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1131 581 132 82 22 chr1 71634340 71634463 -125560969 + B1_Mur2 SINE Alu 2 148 -1 2 1131 766 230 92 0 chr1 71634913 71635109 -125560323 - B3 SINE B2 -2 214 1 2 1131 232 271 51 0 chr1 71635305 71635364 -125560068 - RSINE1 SINE B4 -2 163 102 2 1131 902 143 7 13 chr1 71635393 71635542 -125559890 - B1_Mur3 SINE Alu 0 149 2 2 1131 1750 127 42 48 chr1 71636239 71636570 -125558862 + ORR1A4 LTR MaLR 1 329 0 2 1131 709 136 17 8 chr1 71636967 71637086 -125558346 - PB1D9 SINE Alu 0 120 1 2 1131 21 0 0 0 chr1 71637738 71637759 -125557673 + AT_rich Low_complexity Low_complexity 1 21 0 2 1131 687 158 21 28 chr1 71637812 71637955 -125557477 + B1_Mus2 SINE Alu 4 145 -2 2 1131 549 241 17 51 chr1 71638947 71638998 -125556434 + ID SINE ID 35 79 -145 2 1131 908 94 0 0 chr1 71638998 71639125 -125556307 + B1_Mm SINE Alu 1 127 -20 2 1131 230 81 0 26 chr1 71639170 71639208 -125556224 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1131 409 226 53 99 chr1 71640461 71640613 -125554819 + B4 SINE B4 79 223 -69 2 1131 855 81 0 16 chr1 71640490 71640616 -125554816 + B1_Mus1 SINE Alu 25 148 0 2 1131 994 177 53 15 chr1 71641551 71641757 -125553675 + B3 SINE B2 1 214 -2 2 1131 850 212 18 17 chr1 71642553 71642751 -125552681 + B3 SINE B2 3 187 -6 2 1131 3270 50 0 10 chr1 71643374 71643774 -125551658 + MTA_Mm LTR MaLR 1 396 0 2 1131 240 197 183 0 chr1 71646600 71646671 -125548761 - PB1D10 SINE Alu -17 100 17 2 1131 641 121 58 33 chr1 71648332 71648452 -125546980 - B1_Mus1 SINE Alu -2 146 24 2 1131 270 0 0 0 chr1 71648570 71648600 -125546832 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1131 1505 58 16 5 chr1 71650965 71651157 -125544275 + B2_Mm2 SINE B2 2 195 0 2 1131 560 278 56 19 chr1 71651846 71652059 -125543373 + ID_B1 SINE B4 1 221 -3 2 1131 295 238 48 0 chr1 71653104 71653167 -125542265 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 2 1131 595 238 151 29 chr1 71653713 71653843 -125541589 + Lx9 LINE L1 7363 7516 -128 2 1131 387 0 0 0 chr1 71653843 71653886 -125541546 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1131 595 238 151 29 chr1 71653886 71653993 -125541439 + Lx9 LINE L1 7517 7629 -15 2 1131 549 0 0 0 chr1 71654264 71654325 -125541107 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 3 1131 227 103 0 25 chr1 71654326 71654366 -125541066 + (GGGGA)n Simple_repeat Simple_repeat 1 39 0 3 1131 597 65 0 79 chr1 71654883 71654984 -125540448 - B1_Mur3 SINE Alu 0 149 57 3 1131 432 217 153 15 chr1 71655198 71655329 -125540103 - B1F SINE Alu 0 149 1 3 1131 339 239 167 9 chr1 71655422 71655536 -125539896 + B1F SINE Alu 9 140 -9 3 1131 675 175 58 0 chr1 71655668 71655788 -125539644 - B1_Mus1 SINE Alu -5 143 17 3 1131 273 196 0 0 chr1 71655788 71655844 -125539588 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1131 2333 151 21 44 chr1 71656493 71656924 -125538508 + MTC LTR MaLR 1 421 0 3 1131 226 123 91 15 chr1 71657344 71657410 -125538022 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 3 1131 180 0 0 0 chr1 71659349 71659369 -125536063 + (CTAAT)n Simple_repeat Simple_repeat 5 24 0 3 1131 285 232 210 13 chr1 71662274 71662431 -125533001 + L1MA5 LINE L1 6083 6270 -30 3 1131 409 286 222 79 chr1 71663301 71663545 -125531887 + B4A SINE B4 3 281 -11 3 1131 203 175 35 17 chr1 71663617 71663675 -125531757 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1131 269 240 206 20 chr1 71663675 71663777 -125531655 - B1F SINE Alu -4 145 25 3 1131 1171 69 0 0 chr1 71663801 71663946 -125531486 + B1_Mus1 SINE Alu 3 147 -1 3 1131 267 277 35 35 chr1 71664062 71664178 -125531254 - B4A SINE B4 -175 117 2 3 1131 741 317 68 13 chr1 71664211 71664521 -125530911 + MER2 DNA MER2_type 13 339 -6 3 1131 214 95 48 0 chr1 71664601 71664643 -125530789 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 1131 858 209 27 21 chr1 71664644 71664830 -125530602 - B3 SINE B2 -29 187 1 3 1131 572 262 49 14 chr1 71665665 71665808 -125529624 - B1_Mur1 SINE Alu -1 148 1 3 1131 290 282 13 0 chr1 71665823 71665901 -125529531 - PB1D10 SINE Alu -38 79 1 3 1131 1262 27 0 7 chr1 71667937 71668086 -125527346 - B1_Mus1 SINE Alu 0 148 1 3 1131 631 219 13 40 chr1 71669110 71669262 -125526170 - B1_Mur3 SINE Alu -1 148 1 3 1131 210 263 0 0 chr1 71669903 71669960 -125525472 + T-rich Low_complexity Low_complexity 1 57 0 3 1131 843 135 14 47 chr1 71669961 71670109 -125525323 - B1_Mur2 SINE Alu -1 148 6 3 1131 652 253 53 5 chr1 71670132 71670319 -125525113 - B4A SINE B4 -95 197 2 3 1131 251 264 0 0 chr1 71671814 71671867 -125523565 - ID4_ SINE ID -3 80 28 3 1131 1244 28 0 0 chr1 71671943 71672088 -125523344 - B1_Mus2 SINE Alu -1 146 2 3 1131 268 167 15 29 chr1 71672185 71672253 -125523179 + GA-rich Low_complexity Low_complexity 1 67 0 3 1131 405 0 0 0 chr1 71672965 71673010 -125522422 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1131 825 193 63 17 chr1 71673332 71673506 -125521926 + URR1B DNA MER1_type 1 182 -43 3 1131 222 174 0 0 chr1 71674482 71674528 -125520904 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1131 193 91 22 43 chr1 71674866 71674912 -125520520 + (TATG)n Simple_repeat Simple_repeat 2 46 0 3 1131 289 288 0 36 chr1 71675483 71675566 -125519866 - RSINE1 SINE B4 -84 81 2 3 1131 353 273 65 16 chr1 71677477 71677600 -125517832 + ID_B1 SINE B4 2 130 -94 3 1131 27 0 0 0 chr1 71680520 71680547 -125514885 + AT_rich Low_complexity Low_complexity 1 27 0 3 1131 599 0 14 0 chr1 71680775 71680846 -125514586 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 3 1131 576 209 50 36 chr1 71681781 71681920 -125513512 + ID_B1 SINE B4 83 223 -1 3 1131 315 0 0 0 chr1 71681968 71682003 -125513429 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1131 1112 59 0 7 chr1 71682003 71682140 -125513292 - B1_Mm SINE Alu -10 137 2 3 1131 333 253 79 110 chr1 71682259 71682289 -125513143 + B4 SINE B4 65 89 -203 3 1131 643 181 96 15 chr1 71682289 71682424 -125513008 + B1_Mur3 SINE Alu 3 148 -1 3 1131 23 0 0 0 chr1 71682666 71682689 -125512743 + AT_rich Low_complexity Low_complexity 1 23 0 3 1131 362 201 119 100 chr1 71682766 71682926 -125512506 + RSINE1 SINE B4 3 165 0 3 1131 375 264 0 0 chr1 71683421 71683561 -125511871 + (CA)n Simple_repeat Simple_repeat 1 140 0 3 1131 224 190 17 33 chr1 71684095 71684155 -125511277 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1131 240 35 0 0 chr1 71684961 71684990 -125510442 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 3 1131 1616 220 35 43 chr1 71685578 71685962 -125509470 + MTD LTR MaLR 1 368 -51 3 1131 246 32 0 0 chr1 71685962 71685993 -125509439 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1131 1616 220 35 43 chr1 71685993 71686030 -125509402 + MTD LTR MaLR 369 419 0 3 1131 210 139 0 0 chr1 71686518 71686554 -125508878 + (C)n Simple_repeat Simple_repeat 1 36 0 3 1131 774 75 225 0 chr1 71689250 71689370 -125506062 + B1_Mus2 SINE Alu 1 147 0 3 1131 1405 39 0 0 chr1 71691034 71691214 -125504218 - B2_Mm1t SINE B2 0 193 14 3 1131 606 239 31 19 chr1 71691221 71691383 -125504049 - ID_B1 SINE B4 -33 191 28 3 1131 24 0 0 0 chr1 71691453 71691477 -125503955 + AT_rich Low_complexity Low_complexity 1 24 0 3 1131 538 274 63 63 chr1 71691741 71691932 -125503500 - B4 SINE B4 -89 203 13 3 1131 287 313 30 20 chr1 71692816 71692917 -125502515 + B1F1 SINE Alu 16 117 -32 3 1131 426 245 9 47 chr1 71692828 71692935 -125502497 + ID_B1 SINE B4 107 209 -15 3 1131 336 248 184 28 chr1 71693448 71693589 -125501843 + RSINE1 SINE B4 3 165 0 3 1131 240 262 0 47 chr1 71695077 71695141 -125500291 - ID2 SINE ID -8 75 15 3 1132 267 31 0 0 chr1 71696903 71696935 -125498497 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1132 392 265 13 52 chr1 71698611 71698766 -125496666 + B1F SINE Alu 1 149 0 3 1132 357 125 0 0 chr1 71698766 71698822 -125496610 + (A)n Simple_repeat Simple_repeat 1 56 0 3 1132 252 0 0 0 chr1 71700860 71700888 -125494544 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 3 1132 180 0 0 0 chr1 71701079 71701099 -125494333 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1132 192 40 0 0 chr1 71701389 71701414 -125494018 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1132 673 151 8 48 chr1 71702117 71702242 -125493190 + B3 SINE B2 1 120 -96 3 1132 208 150 35 81 chr1 71702274 71702361 -125493071 + T-rich Low_complexity Low_complexity 3 85 0 3 1132 243 0 0 0 chr1 71703030 71703057 -125492375 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1132 237 303 0 13 chr1 71704406 71704483 -125490949 - ID4_ SINE ID -7 76 1 3 1132 236 295 25 25 chr1 71705094 71705174 -125490258 - MIRb SINE MIR -47 221 142 3 1132 946 56 0 0 chr1 71705538 71705663 -125489769 - B1_Mus2 SINE Alu 0 147 23 3 1132 260 53 0 26 chr1 71705772 71705811 -125489621 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1132 1091 130 78 11 chr1 71706002 71706017 -125489415 - B2_Mm2 SINE B2 -4 191 177 3 1132 387 0 0 0 chr1 71706017 71706060 -125489372 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1132 1091 130 78 11 chr1 71706060 71706223 -125489209 - B2_Mm2 SINE B2 -19 176 2 3 1132 311 265 128 56 chr1 71706223 71706252 -125489180 - B2_Mm1a SINE B2 0 193 163 3 1132 543 56 0 0 chr1 71706252 71706323 -125489109 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 3 1132 529 226 43 63 chr1 71706323 71706473 -125488959 - B3A SINE B2 -31 162 1 3 1132 758 189 21 0 chr1 71706895 71707038 -125488394 + B1_Mus2 SINE Alu 1 146 -1 3 1132 381 22 0 0 chr1 71707211 71707257 -125488175 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1132 757 42 30 0 chr1 71707596 71707714 -125487718 - B1_Mm SINE Alu -9 139 2 3 1132 1288 99 15 45 chr1 71708207 71708407 -125487025 - B2_Mm2 SINE B2 0 195 2 3 1132 422 316 24 37 chr1 71708877 71709041 -125486391 - RSINE1 SINE B4 -1 164 3 3 1132 1356 93 6 0 chr1 71709646 71709829 -125485603 - B2_Mm1a SINE B2 -8 185 2 3 1132 488 283 26 7 chr1 71710502 71710655 -125484777 + MLT1B LTR MaLR 20 175 -215 3 1132 528 176 0 19 chr1 71711019 71711123 -125484309 - B1_Mur2 SINE Alu -6 143 42 3 1132 224 0 0 157 chr1 71711126 71711234 -125484198 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 3 1132 245 220 0 48 chr1 71711235 71711297 -125484135 - PB1D9 SINE Alu -61 59 1 3 1132 396 0 0 0 chr1 71713750 71713794 -125481638 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1132 772 319 202 42 chr1 71714053 71714738 -125480694 + MTE-int LTR MaLR 54 848 -732 3 1132 2703 63 41 41 chr1 71714738 71715149 -125480283 - RLTR10A LTR ERVK 0 411 1 3 1132 772 319 202 42 chr1 71715149 71715329 -125480103 + MTE-int LTR MaLR 849 1058 -522 3 1132 288 0 0 0 chr1 71715365 71715397 -125480035 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1132 572 286 87 33 chr1 71715420 71715695 -125479737 - B4A SINE B4 -2 290 1 3 1132 254 305 37 0 chr1 71715754 71715836 -125479596 - PB1D10 SINE Alu -16 101 17 3 1132 225 311 44 70 chr1 71715860 71715974 -125479458 + MER58B DNA MER1_type 231 341 0 3 1132 192 179 0 0 chr1 71716899 71716938 -125478494 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 1132 2248 126 14 11 chr1 71717273 71717626 -125477806 + ORR1B1 LTR MaLR 41 394 0 3 1132 452 235 81 40 chr1 71717626 71717748 -125477684 + RSINE1 SINE B4 22 148 -17 3 1132 324 0 0 0 chr1 71717841 71717877 -125477555 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1132 808 201 0 20 chr1 71718537 71718689 -125476743 + B1_Mur2 SINE Alu 1 149 0 3 1132 1296 168 166 70 chr1 71719887 71720290 -125475142 - RMER10A LTR ERVL 0 442 1 3 1132 1050 259 68 68 chr1 71720290 71720506 -125474926 - MTE2b LTR MaLR -24 355 127 3 1132 423 0 0 0 chr1 71720506 71720553 -125474879 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1132 432 0 0 0 chr1 71720553 71720600 -125474832 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1132 1050 259 66 69 chr1 71720600 71720738 -125474694 - MTE2b LTR MaLR -253 126 10 3 1132 1593 178 9 74 chr1 71721546 71721976 -125473456 - RMER17C LTR ERVK 0 410 9 4 1132 659 230 52 0 chr1 71722380 71722515 -125472917 - B1F2 SINE Alu -6 143 2 4 1132 237 65 0 0 chr1 71722641 71722672 -125472760 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 4 1132 706 123 0 19 chr1 71723052 71723160 -125472272 - B2_Mm2 SINE B2 -88 107 2 4 1132 765 256 129 74 chr1 71723274 71723734 -125471698 - MLT1E3 LTR MaLR -2 651 156 4 1132 407 247 212 36 chr1 71723815 71724008 -125471424 + MIRb SINE MIR 28 254 -14 4 1132 1391 151 0 14 chr1 71724166 71724387 -125471045 + URR1B DNA MER1_type 8 225 0 4 1132 2024 152 5 65 chr1 71724798 71725170 -125470262 - ORR1B1 LTR MaLR -2 392 43 4 1132 268 265 0 67 chr1 71725348 71725437 -125469995 - ORR1B1 LTR MaLR -287 92 10 4 1132 330 229 16 0 chr1 71725699 71725760 -125469672 + ID4_ SINE ID 4 65 -18 4 1132 591 370 77 30 chr1 71725928 71726355 -125469077 + MLT1K LTR MaLR 145 591 -4 4 1132 274 312 146 0 chr1 71727444 71727540 -125467892 - PB1D9 SINE Alu -10 110 1 4 1132 532 272 21 42 chr1 71727569 71727761 -125467671 - Lx8 LINE L1 -2 7471 7284 4 1132 229 240 90 39 chr1 71727993 71728071 -125467361 + ID2 SINE ID 2 83 0 4 1132 250 196 0 0 chr1 71728113 71728159 -125467273 - L1MC5 LINE L1 -215 7746 7701 4 1132 297 114 0 71 chr1 71729686 71729771 -125465661 + (TCTCTG)n Simple_repeat Simple_repeat 1 79 0 4 1132 306 250 15 0 chr1 71729771 71729839 -125465593 - PB1D10 SINE Alu -41 76 8 4 1132 242 274 0 16 chr1 71731401 71731464 -125463968 + CT-rich Low_complexity Low_complexity 2 63 0 4 1132 247 214 197 14 chr1 71731673 71731744 -125463688 + RSINE1 SINE B4 1 84 -208 4 1132 666 75 0 0 chr1 71731805 71731898 -125463534 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 1132 3336 137 16 10 chr1 71732165 71732681 -125462751 - RLTR28 LTR ERVL -4 520 2 4 1132 305 212 121 56 chr1 71732693 71732806 -125462626 + MLT1A1 LTR MaLR 259 396 -12 4 1132 802 205 62 28 chr1 71733225 71733401 -125462031 + B3A SINE B2 1 182 -16 4 1132 250 364 42 83 chr1 71733511 71733655 -125461777 - MLT1K LTR MaLR -175 420 283 4 1132 267 261 149 50 chr1 71733717 71733878 -125461554 - LTR79 LTR ERVL -55 472 296 4 1132 649 213 26 26 chr1 71734519 71734673 -125460759 - MTD LTR MaLR -22 397 244 4 1132 3642 163 8 62 chr1 71735418 71736064 -125459368 - RMER19C LTR ERVK 0 611 1 4 1132 187 333 35 90 chr1 71736705 71736906 -125458526 + L2a LINE L2 2782 2971 -448 4 1132 237 324 74 0 chr1 71736941 71737049 -125458383 + L2a LINE L2 3065 3180 -246 4 1132 269 346 0 0 chr1 71737058 71737139 -125458293 + MLT1D LTR MaLR 1 81 -424 4 1132 585 0 0 0 chr1 71737139 71737204 -125458228 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1132 736 317 40 4 chr1 71737298 71737526 -125457906 + MLT1D LTR MaLR 270 505 0 4 1132 191 356 86 13 chr1 71737610 71737761 -125457671 + L2a LINE L2 3251 3412 -14 4 1132 339 304 88 0 chr1 71737853 71737955 -125457477 + B1F1 SINE Alu 2 112 -37 4 1132 225 94 0 0 chr1 71737971 71738003 -125457429 + (TAAG)n Simple_repeat Simple_repeat 3 34 0 4 1132 325 328 16 8 chr1 71739019 71739148 -125456284 - Lx8 LINE L1 -308 7165 7036 4 1132 190 229 62 0 chr1 71739503 71739551 -125455881 - L3 LINE CR1 -3531 958 908 4 1132 197 159 23 0 chr1 71739831 71739875 -125455557 + T-rich Low_complexity Low_complexity 5 49 0 4 1132 275 247 137 0 chr1 71739904 71739977 -125455455 - PB1D10 SINE Alu -20 107 25 4 1132 429 20 0 0 chr1 71740297 71740347 -125455085 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1132 29 28 0 0 chr1 71740544 71740580 -125454852 + AT_rich Low_complexity Low_complexity 1 36 0 4 1132 997 111 20 3 chr1 71740583 71740879 -125454553 + (GAAA)n Simple_repeat Simple_repeat 1 301 0 4 1132 389 216 165 10 chr1 71741330 71741433 -125453999 + B1_Mur1 SINE Alu 1 119 -30 4 1132 618 14 0 0 chr1 71741444 71741515 -125453917 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1132 775 259 124 23 chr1 71742400 71742665 -125452767 + B4 SINE B4 1 292 0 4 1132 258 205 122 55 chr1 71743040 71743180 -125452252 + Arthur1 DNA Tip100 3536 3687 -260 4 1132 279 222 93 0 chr1 71743199 71743253 -125452179 + ID4 SINE ID 23 81 -2 4 1132 355 259 74 13 chr1 71743281 71743430 -125452002 + Arthur1 DNA Tip100 3703 3860 -87 4 1132 585 76 0 0 chr1 71743513 71743592 -125451840 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1132 264 341 34 0 chr1 71743614 71743702 -125451730 - RMER15 LTR ERVL -114 461 371 4 1132 2028 266 127 45 chr1 71743702 71744106 -125451326 - Lx8 LINE L1 -240 7233 6775 4 1132 2339 187 70 18 chr1 71744106 71744607 -125450825 + RLTR11A2 LTR ERVK 1 527 0 4 1132 2028 266 127 45 chr1 71744607 71744966 -125450466 - Lx8 LINE L1 -699 6774 6407 4 1132 286 224 101 38 chr1 71744970 71745049 -125450383 - B4A SINE B4 -204 88 5 4 1132 1178 56 28 0 chr1 71745144 71745287 -125450145 + B1_Mus1 SINE Alu 2 148 0 4 1132 34 72 0 0 chr1 71745347 71745416 -125450016 + AT_rich Low_complexity Low_complexity 1 69 0 4 1132 2131 63 40 4 chr1 71745477 71745749 -125449683 + L1_Mus2 LINE L1 6284 6565 -1 4 1132 22 0 0 0 chr1 71745836 71745858 -125449574 + AT_rich Low_complexity Low_complexity 1 22 0 4 1132 450 0 0 0 chr1 71746531 71746581 -125448851 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1132 1046 229 119 31 chr1 71746739 71746826 -125448606 + ORR1C2 LTR MaLR 197 205 -179 4 1132 257 0 30 0 chr1 71746826 71746859 -125448573 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1132 1046 178 5 26 chr1 71746859 71747037 -125448395 + ORR1C2 LTR MaLR 206 382 -2 4 1132 330 26 0 0 chr1 71747311 71747350 -125448082 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1132 664 235 81 35 chr1 71747690 71747862 -125447570 + B3A SINE B2 3 182 -16 4 1132 21 0 0 0 chr1 71747909 71747930 -125447502 + AT_rich Low_complexity Low_complexity 1 21 0 4 1132 575 318 61 58 chr1 71747976 71748303 -125447129 + LTR33 LTR ERVL 99 426 -89 4 1132 687 172 88 22 chr1 71748318 71748455 -125446977 - B1_Mus2 SINE Alu -1 146 1 4 1132 309 109 0 0 chr1 71749771 71749817 -125445615 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1132 3772 184 131 51 chr1 71749910 71750747 -125444685 + RMER13B LTR ERVK 1 904 -4 4 1132 422 36 18 0 chr1 71750917 71750973 -125444459 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1132 252 59 0 0 chr1 71750981 71751015 -125444417 + (TGG)n Simple_repeat Simple_repeat 1 34 0 4 1132 2035 165 38 70 chr1 71751097 71751494 -125443938 - ORR1C2 LTR MaLR 0 384 1 4 1132 2477 147 85 57 chr1 71752165 71752199 -125443233 - RLTR31_Mm LTR ERVK 0 561 546 4 1132 1745 36 0 0 chr1 71752199 71752391 -125443041 + B2_Mm1t SINE B2 2 193 0 4 1132 2477 159 104 47 chr1 71752391 71752985 -125442447 - RLTR31_Mm LTR ERVK -16 545 1 4 1132 376 306 99 0 chr1 71753901 71754022 -125441410 + RSINE1 SINE B4 14 146 -19 4 1132 234 0 0 0 chr1 71754037 71754063 -125441369 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1132 794 329 82 68 chr1 71754355 71754483 -125440949 + MLT1G3 LTR MaLR 1 132 -463 4 1132 2559 89 3 3 chr1 71754483 71754810 -125440622 - ORR1A2 LTR MaLR 0 327 1 4 1132 794 329 82 68 chr1 71754810 71755050 -125440382 + MLT1G3 LTR MaLR 133 378 -217 4 1132 1463 57 57 0 chr1 71755050 71755244 -125440188 + L1_Mus2 LINE L1 6362 6566 0 4 1132 794 329 82 68 chr1 71755244 71755328 -125440104 + MLT1G3 LTR MaLR 379 460 -135 4 1132 545 42 14 0 chr1 71755477 71755549 -125439883 + (TTCTC)n Simple_repeat Simple_repeat 3 75 0 4 1132 396 0 0 0 chr1 71755569 71755613 -125439819 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 1132 203 0 0 36 chr1 71756918 71756946 -125438486 + (TTTTTG)n Simple_repeat Simple_repeat 1 27 0 4 1132 312 172 0 0 chr1 71757206 71757264 -125438168 + CT-rich Low_complexity Low_complexity 1 58 0 4 1132 1453 89 10 16 chr1 71757264 71757458 -125437974 - B2_Mm2 SINE B2 -2 193 1 4 1132 497 405 66 0 chr1 71758351 71758610 -125436822 + LTR33A LTR ERVL 37 312 -208 4 1132 26 50 0 0 chr1 71758612 71758652 -125436780 + AT_rich Low_complexity Low_complexity 1 40 0 4 1132 692 278 33 24 chr1 71758681 71758891 -125436541 + B3 SINE B2 1 212 -4 4 1132 518 254 64 37 chr1 71759403 71759591 -125435841 - L1MC2 LINE L1 -26 6318 6126 4 1132 405 289 280 7 chr1 71759679 71760140 -125435292 - L1MC2 LINE L1 -2224 5771 5187 4 1132 1598 48 16 11 chr1 71760146 71760335 -125435097 - B2_Mm2 SINE B2 -4 191 2 4 1132 183 114 0 0 chr1 71761589 71761624 -125433808 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1132 1081 51 7 0 chr1 71761624 71761762 -125433670 - B1_Mm SINE Alu 0 147 9 4 1132 23 68 0 0 chr1 71761782 71761826 -125433606 + AT_rich Low_complexity Low_complexity 1 44 0 4 1132 4948 141 73 73 chr1 71762185 71763087 -125432345 + RMER19B LTR ERVK 1 902 0 4 1132 222 150 0 0 chr1 71763290 71763330 -125432102 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 4 1132 26 82 0 0 chr1 71764054 71764115 -125431317 + AT_rich Low_complexity Low_complexity 1 61 0 4 1132 7880 81 8 19 chr1 71764480 71765464 -125429968 + L1_Mus3 LINE L1 5176 6148 -490 4 1132 1321 27 0 0 chr1 71765464 71765610 -125429822 - B1_Mm SINE Alu 0 147 2 4 1132 7880 67 12 32 chr1 71765610 71766103 -125429329 + L1_Mus3 LINE L1 6149 6633 -5 4 1132 517 288 51 101 chr1 71766154 71766332 -125429100 + B3A SINE B2 27 195 -3 4 1132 236 280 141 70 chr1 71766519 71766661 -125428771 - MLT1J2 LTR MaLR -13 435 284 4 1132 236 298 104 22 chr1 71766693 71766827 -125428605 - MLT1J2 LTR MaLR -286 158 14 4 1132 550 287 77 6 chr1 71767033 71767201 -125428231 - B3A SINE B2 -17 181 2 4 1132 635 245 43 14 chr1 71767209 71767350 -125428082 - B1_Mur1 SINE Alu -3 146 2 4 1132 933 174 0 0 chr1 71767428 71767572 -125427860 + B1_Mus2 SINE Alu 1 144 -3 4 1132 600 235 0 8 chr1 71767971 71768091 -125427341 + PB1D9 SINE Alu 2 120 0 4 1132 568 226 176 58 chr1 71770071 71770259 -125425173 - B4 SINE B4 -82 210 1 4 1132 243 0 0 0 chr1 71770970 71770997 -125424435 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1132 236 278 181 0 chr1 71771490 71771562 -125423870 + B4 SINE B4 202 286 -6 5 1132 1221 99 37 32 chr1 71771611 71771798 -125423634 + B2_Mm2 SINE B2 1 188 -7 5 1132 306 341 92 11 chr1 71772175 71772423 -125423009 + L3b LINE CR1 3953 4244 -264 5 1132 441 0 0 0 chr1 71772809 71772858 -125422574 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1132 786 22 0 0 chr1 71773056 71773148 -125422284 + (TTTC)n Simple_repeat Simple_repeat 4 95 0 5 1132 21 0 0 0 chr1 71773205 71773226 -125422206 + AT_rich Low_complexity Low_complexity 1 21 0 5 1132 1005 218 64 5 chr1 71773451 71773654 -125421778 - B3 SINE B2 0 216 2 5 1132 207 184 0 0 chr1 71774202 71774240 -125421192 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1132 688 179 163 0 chr1 71774242 71774365 -125421067 + B1_Mus1 SINE Alu 5 147 -1 5 1132 293 73 0 52 chr1 71774367 71774425 -125421007 + (A)n Simple_repeat Simple_repeat 1 55 0 5 1132 479 215 93 193 chr1 71774516 71774666 -125420766 - B1_Mur1 SINE Alu 0 149 15 5 1132 349 250 65 43 chr1 71774586 71774678 -125420754 - MT2B LTR ERVL -343 258 165 5 1132 21 36 0 0 chr1 71774754 71774782 -125420650 + AT_rich Low_complexity Low_complexity 1 28 0 5 1132 439 278 13 34 chr1 71774875 71775024 -125420408 - MLT1D LTR MaLR -5 500 355 5 1132 272 351 74 26 chr1 71776374 71776564 -125418868 + Helitron3Na_Mam RC Helitron 23 221 -265 5 1132 215 61 0 29 chr1 71778780 71778814 -125416618 + (TTCTC)n Simple_repeat Simple_repeat 4 36 0 5 1132 373 256 21 57 chr1 71778818 71778959 -125416473 - B1F SINE Alu -12 137 2 5 1132 377 220 0 21 chr1 71780060 71780153 -125415279 - BC1_Mm scRNA scRNA -48 104 14 5 1132 727 181 6 0 chr1 71780153 71780503 -125414929 + (CA)n Simple_repeat Simple_repeat 1 352 0 5 1132 433 173 0 50 chr1 71780708 71780804 -125414628 + PB1D7 SINE Alu 18 106 -14 5 1132 22 0 0 0 chr1 71781239 71781261 -125414171 + AT_rich Low_complexity Low_complexity 1 22 0 5 1132 336 48 0 0 chr1 71781581 71781623 -125413809 + (CATA)n Simple_repeat Simple_repeat 1 42 0 5 1132 405 81 0 0 chr1 71781702 71781764 -125413668 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1132 260 204 0 0 chr1 71781771 71781815 -125413617 + B1_Mur1 SINE Alu 86 129 -20 5 1132 215 189 0 19 chr1 71781859 71781913 -125413519 + CT-rich Low_complexity Low_complexity 2 54 0 5 1132 254 312 118 59 chr1 71781913 71782015 -125413417 - B1F SINE Alu -19 130 23 5 1132 26 64 0 0 chr1 71782713 71782760 -125412672 + AT_rich Low_complexity Low_complexity 1 47 0 5 1132 226 200 39 39 chr1 71782772 71782824 -125412608 + B2_Mm2 SINE B2 2 53 -142 5 1132 263 246 31 0 chr1 71782808 71782873 -125412559 + B3 SINE B2 71 137 -79 5 1132 897 203 81 0 chr1 71784221 71784418 -125411014 - B3 SINE B2 -2 214 2 5 1132 240 213 0 0 chr1 71784617 71784664 -125410768 + Lx8 LINE L1 7419 7465 -8 5 1132 1066 92 7 0 chr1 71784910 71785052 -125410380 + B1_Mus1 SINE Alu 3 145 -3 5 1132 207 0 0 0 chr1 71785052 71785075 -125410357 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1132 698 132 44 156 chr1 71785285 71785465 -125409967 + RMER6A LTR ERVK 3 162 -594 5 1132 958 148 0 0 chr1 71785450 71785605 -125409827 + RMER6A LTR ERVK 602 756 0 5 1132 246 282 14 0 chr1 71785614 71785685 -125409747 - LTR16A1 LTR ERVL -26 430 359 5 1132 527 319 47 35 chr1 71785690 71786035 -125409397 - ORR1E LTR MaLR 0 379 1 5 1132 339 289 90 71 chr1 71786035 71786235 -125409197 - LTR16A1 LTR ERVL -119 337 134 5 1132 1218 228 50 70 chr1 71786855 71787216 -125408216 + MTE2b LTR MaLR 1 352 -27 5 1132 356 91 0 15 chr1 71787216 71787283 -125408149 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 5 1132 1218 228 50 70 chr1 71787283 71787304 -125408128 + MTE2b LTR MaLR 353 374 -5 5 1132 264 281 146 0 chr1 71787582 71787671 -125407761 + ORR1E LTR MaLR 3 104 -255 5 1132 468 284 160 4 chr1 71787869 71788113 -125407319 - RMER20B LTR ERVK -219 408 127 5 1132 258 256 11 65 chr1 71788249 71788341 -125407091 + ORR1E LTR MaLR 241 327 -52 5 1132 360 90 345 0 chr1 71788345 71788455 -125406977 - B2_Mm2 SINE B2 -1 194 47 5 1132 1290 96 23 0 chr1 71788502 71788679 -125406753 - B2_Mm2 SINE B2 -14 181 1 5 1132 368 296 129 51 chr1 71789190 71789407 -125406025 - MER102a DNA MER1_type -14 316 83 5 1132 630 337 30 38 chr1 71789570 71789940 -125405492 - MLT1A LTR MaLR -4 370 4 5 1132 1368 67 0 0 chr1 71790359 71790539 -125404893 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1132 706 182 7 7 chr1 71790539 71790694 -125404738 + GA-rich Low_complexity Low_complexity 3 157 0 5 1132 605 280 89 11 chr1 71791042 71791233 -125404199 + ID_B1 SINE B4 9 214 -10 5 1132 182 376 25 8 chr1 71791248 71791366 -125404066 - MIRb SINE MIR -50 218 99 5 1132 572 258 68 47 chr1 71791494 71791685 -125403747 - MER105 DNA DNA -5 199 5 5 1132 270 0 0 0 chr1 71792166 71792196 -125403236 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1132 378 0 0 0 chr1 71792196 71792237 -125403195 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1132 233 109 22 0 chr1 71792406 71792452 -125402980 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1132 582 224 7 22 chr1 71792454 71792591 -125402841 - B1_Mur1 SINE Alu -13 136 2 5 1132 3300 51 2 2 chr1 71793374 71793770 -125401662 + MTA_Mm LTR MaLR 1 396 0 5 1132 254 190 0 65 chr1 71793791 71793853 -125401579 + Lx8 LINE L1 7416 7473 0 5 1132 1956 201 84 5 chr1 71795074 71795503 -125399929 + MT2A LTR ERVL 1 463 -70 5 1132 337 234 148 9 chr1 71795510 71795618 -125399814 + MLT1A1 LTR MaLR 272 394 -14 5 1132 818 276 35 0 chr1 71795678 71795877 -125399555 - B3 SINE B2 -6 210 5 5 1132 1932 168 41 6 chr1 71796069 71796434 -125398998 + ORR1C1 LTR MaLR 1 378 0 5 1132 219 25 49 24 chr1 71796563 71796604 -125398828 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1132 351 263 92 28 chr1 71797859 71798000 -125397432 + RMER15 LTR ERVL 426 575 0 5 1132 4473 166 67 37 chr1 71799313 71800188 -125395244 + RMER19B LTR ERVK 1 902 0 5 1132 315 277 19 29 chr1 71800416 71800520 -125394912 + MLT1B LTR MaLR 20 122 -268 5 1132 342 285 124 0 chr1 71800778 71800915 -125394517 + MIRb SINE MIR 92 245 -23 5 1132 369 0 0 0 chr1 71801098 71801139 -125394293 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1132 402 262 81 2 chr1 71801775 71801899 -125393533 + B1F1 SINE Alu 17 149 0 5 1132 269 255 15 19 chr1 71802596 71802715 -125392717 + L1MB3 LINE L1 5236 5353 -790 5 1132 376 261 9 43 chr1 71802833 71802949 -125392483 + PB1D10 SINE Alu 6 117 0 5 1132 306 73 0 0 chr1 71803029 71803070 -125392362 + (ACTG)n Simple_repeat Simple_repeat 4 44 0 5 1132 589 295 81 81 chr1 71803187 71803718 -125391714 + L1MB3 LINE L1 5574 6104 -79 5 1132 522 79 0 0 chr1 71804311 71804387 -125391045 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1132 890 128 34 47 chr1 71804419 71804567 -125390865 + B1_Mus2 SINE Alu 1 146 -1 5 1132 227 73 0 68 chr1 71804568 71804627 -125390805 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1132 217 233 0 0 chr1 71805393 71805436 -125389996 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1132 222 37 0 0 chr1 71805461 71805488 -125389944 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1132 777 158 81 22 chr1 71805521 71805657 -125389775 - B1_Mur2 SINE Alu -5 144 1 5 1132 27 0 0 0 chr1 71805667 71805694 -125389738 + AT_rich Low_complexity Low_complexity 1 27 0 5 1132 33 0 0 0 chr1 71805831 71805864 -125389568 + AT_rich Low_complexity Low_complexity 1 33 0 5 1132 1904 142 98 34 chr1 71805885 71806242 -125389190 + ORR1C2 LTR MaLR 1 380 -4 5 1132 429 296 45 76 chr1 71806420 71806709 -125388723 - RLTR12B LTR ERVK -210 318 39 5 1132 351 0 0 0 chr1 71806711 71806750 -125388682 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1132 257 336 44 9 chr1 71807137 71807251 -125388181 - MER63D DNA AcHobo -681 380 263 5 1132 312 27 0 0 chr1 71807347 71807384 -125388048 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1132 755 158 17 23 chr1 71807381 71807556 -125387876 + CT-rich Low_complexity Low_complexity 3 176 0 5 1132 299 71 0 48 chr1 71807785 71807852 -125387580 - B2_Mm1t SINE B2 -16 179 121 5 1132 348 43 0 0 chr1 71807943 71807989 -125387443 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1132 640 275 151 21 chr1 71808200 71808479 -125386953 + MLT1A LTR MaLR 60 374 0 5 1132 1166 55 0 7 chr1 71808579 71808726 -125386706 - B1_Mus1 SINE Alu 0 148 3 5 1132 763 276 0 0 chr1 71811283 71811446 -125383986 - RSINE1 SINE B4 0 165 3 5 1132 22 35 0 0 chr1 71811449 71811478 -125383954 + AT_rich Low_complexity Low_complexity 1 29 0 5 1132 618 253 26 58 chr1 71811479 71811668 -125383764 - B3A SINE B2 -15 183 1 5 1132 344 306 6 70 chr1 71812441 71812599 -125382833 + RSINE1 SINE B4 3 150 -15 5 1132 1226 41 7 0 chr1 71812635 71812781 -125382651 + B1_Mus1 SINE Alu 2 148 0 5 1132 198 0 0 0 chr1 71813146 71813168 -125382264 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 1132 1135 43 14 0 chr1 71813170 71813309 -125382123 - B1_Mm SINE Alu -6 141 1 5 1132 1284 89 0 0 chr1 71814033 71814213 -125381219 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1132 504 299 38 6 chr1 71814224 71814382 -125381050 + MER58B DNA MER1_type 179 341 0 5 1132 341 223 223 0 chr1 71814472 71814584 -125380848 + B3A SINE B2 15 151 -47 5 1132 258 32 0 0 chr1 71814601 71814632 -125380800 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1132 21 36 0 0 chr1 71814647 71814675 -125380757 + AT_rich Low_complexity Low_complexity 1 28 0 5 1132 712 123 1 0 chr1 71815129 71815254 -125380178 + B1_Mur3 SINE Alu 11 136 -13 5 1132 423 0 0 0 chr1 71815256 71815303 -125380129 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1132 295 252 153 73 chr1 71815304 71815565 -125379867 + B4A SINE B4 3 284 -8 6 1132 752 165 83 0 chr1 71815607 71815740 -125379692 + B1_Mus2 SINE Alu 3 146 -1 6 1132 189 213 0 130 chr1 71815830 71815884 -125379548 - MER5B DNA MER1_type -26 152 106 6 1132 1169 95 0 6 chr1 71815928 71816098 -125379334 - B2_Mm2 SINE B2 -26 169 1 6 1132 914 264 36 70 chr1 71816161 71816181 -125379251 - B4A SINE B4 0 292 281 6 1132 270 0 0 0 chr1 71816181 71816211 -125379221 + (TGG)n Simple_repeat Simple_repeat 3 32 0 6 1132 914 264 36 70 chr1 71816211 71816491 -125378941 - B4A SINE B4 -12 280 2 6 1132 5380 121 122 73 chr1 71817170 71818275 -125377157 - RLTR42-int LTR ERVK -3043 2479 1321 6 1132 3727 196 131 58 chr1 71818288 71818853 -125376579 - RLTR42-int LTR ERVK -4323 1199 579 6 1132 2284 102 38 0 chr1 71818853 71819168 -125376264 + ORR1A2 LTR MaLR 1 327 0 6 1132 3727 196 131 58 chr1 71819168 71819690 -125375742 - RLTR42-int LTR ERVK -4944 578 33 6 1132 860 151 14 0 chr1 71819732 71819871 -125375561 + B1_Mur3 SINE Alu 4 144 -5 6 1132 1125 184 12 86 chr1 71819867 71820111 -125375321 - RLTR42 LTR ERVK -13 226 1 6 1132 600 218 0 0 chr1 71820674 71820853 -125374579 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1132 207 170 0 0 chr1 71820867 71820914 -125374518 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1132 439 358 32 0 chr1 71820914 71821104 -125374328 - B3A SINE B2 -2 196 1 6 1132 202 200 0 0 chr1 71822360 71822405 -125373027 + C-rich Low_complexity Low_complexity 1 45 0 6 1132 293 283 21 11 chr1 71823005 71823098 -125372334 - MER5A DNA MER1_type -4 185 92 6 1132 465 247 111 105 chr1 71824972 71825162 -125370270 + B3A SINE B2 3 193 -5 6 1132 24 53 0 0 chr1 71825366 71825404 -125370028 + AT_rich Low_complexity Low_complexity 1 38 0 6 1132 233 230 23 12 chr1 71825742 71825867 -125369565 + GA-rich Low_complexity Low_complexity 1 126 0 6 1132 621 182 118 29 chr1 71825926 71826062 -125369370 - B1F2 SINE Alu -1 148 1 6 1132 189 0 0 0 chr1 71826171 71826192 -125369240 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1132 309 76 133 0 chr1 71826210 71826265 -125369167 - B2_Mm2 SINE B2 -86 112 46 6 1132 1206 120 17 0 chr1 71826312 71826487 -125368945 - B2_Mm1t SINE B2 -15 178 1 6 1132 22 0 0 0 chr1 71826503 71826525 -125368907 + AT_rich Low_complexity Low_complexity 1 22 0 6 1132 348 291 43 0 chr1 71827064 71827181 -125368251 - MIR SINE MIR -33 229 108 6 141 530 253 49 95 chr1 71827298 71827604 -125367828 + B4A SINE B4 1 292 0 6 1133 209 163 20 0 chr1 71827616 71827665 -125367767 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1133 406 345 131 27 chr1 71829305 71829603 -125365829 - MTE-int LTR MaLR -520 1060 732 6 1133 307 333 0 0 chr1 71829648 71829732 -125365700 - MTE-int LTR MaLR -949 631 548 6 1133 437 301 121 63 chr1 71829774 71829816 -125365616 - MTE-int LTR MaLR -1133 447 410 6 1133 2331 103 169 0 chr1 71829816 71830176 -125365256 - MTC LTR MaLR 0 421 1 6 1133 437 301 121 63 chr1 71830176 71830336 -125365096 - MTE-int LTR MaLR -1171 409 231 6 1133 2202 163 8 0 chr1 71830336 71830711 -125364721 + ORR1C1 LTR MaLR 1 378 0 6 1133 437 301 121 63 chr1 71830711 71830730 -125364702 - MTE-int LTR MaLR -1350 230 212 6 1133 229 262 23 45 chr1 71830811 71830899 -125364533 - MTE2b LTR MaLR -16 363 278 6 1133 534 273 7 7 chr1 71831192 71831336 -125364096 + MLT1B LTR MaLR 214 357 -33 6 1133 294 95 0 0 chr1 71832204 71832246 -125363186 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 6 1133 436 299 0 0 chr1 71832250 71832367 -125363065 - PB1D10 SINE Alu 0 117 1 6 1133 201 243 13 26 chr1 71832544 71832620 -125362812 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1133 207 342 79 42 chr1 71833014 71833179 -125362253 - MIR SINE MIR -26 236 66 6 1133 894 307 39 63 chr1 71833250 71833537 -125361895 - MLT1A0 LTR MaLR -3 362 87 6 1133 486 0 0 0 chr1 71833537 71833591 -125361841 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1133 894 307 39 63 chr1 71833591 71833665 -125361767 - MLT1A0 LTR MaLR -279 86 10 6 1133 244 262 0 184 chr1 71833777 71833875 -125361557 + Helitron3Na_Mam RC Helitron 103 182 -304 6 1133 453 259 60 81 chr1 71833972 71834054 -125361378 - MLT1B LTR MaLR -2 388 305 6 1133 2779 91 54 131 chr1 71834054 71834520 -125360912 + RLTR23 LTR ERV1 1 430 0 6 1133 453 259 60 81 chr1 71834520 71834622 -125360810 - MLT1B LTR MaLR -86 304 208 6 1133 885 271 86 38 chr1 71834739 71835053 -125360379 - MTEa LTR MaLR -46 333 5 6 1133 305 222 0 40 chr1 71835056 71835131 -125360301 - MLT1B LTR MaLR -297 93 22 6 1133 278 194 165 48 chr1 71836014 71836117 -125359315 - Charlie5 DNA MER1_type -266 2358 2244 6 1133 55 48 0 0 chr1 71836128 71836211 -125359221 + AT_rich Low_complexity Low_complexity 1 83 0 6 1133 369 0 0 0 chr1 71837192 71837233 -125358199 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1133 338 296 6 0 chr1 71838172 71838351 -125357081 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1133 260 211 0 17 chr1 71838370 71838428 -125357004 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1133 630 0 0 0 chr1 71838662 71838732 -125356700 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 6 1133 321 185 0 0 chr1 71839031 71839096 -125356336 + GA-rich Low_complexity Low_complexity 5 69 0 6 1133 672 284 69 107 chr1 71839105 71839468 -125355964 - MLT2C1 LTR ERVL -48 349 1 6 1133 336 111 0 0 chr1 71839858 71839912 -125355520 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1133 821 297 27 60 chr1 71839917 71840133 -125355299 - B4A SINE B4 0 292 87 6 1133 270 0 0 0 chr1 71840133 71840163 -125355269 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1133 821 297 27 60 chr1 71840163 71840247 -125355185 - B4A SINE B4 -206 86 3 6 1133 333 295 39 92 chr1 71841532 71841685 -125353747 + ID_B1 SINE B4 78 222 -2 6 1133 264 261 185 0 chr1 71841685 71841750 -125353682 + ID4 SINE ID 4 80 -3 6 1133 515 360 10 5 chr1 71841938 71842139 -125353293 - MER20 DNA MER1_type 0 219 18 6 1133 348 157 37 0 chr1 71842693 71842801 -125352631 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 6 1133 999 242 5 15 chr1 71842809 71843014 -125352418 - B3 SINE B2 -13 203 1 6 1133 851 154 113 62 chr1 71844501 71844695 -125350737 - RMER10B LTR ERVL 0 398 195 6 1133 225 94 0 0 chr1 71844695 71844727 -125350705 + (GGA)n Simple_repeat Simple_repeat 2 33 0 6 1133 1157 195 30 26 chr1 71844734 71844998 -125350434 - RMER10B LTR ERVL -133 265 1 6 1133 195 69 0 0 chr1 71845051 71845080 -125350352 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1133 995 282 33 55 chr1 71845278 71845645 -125349787 + ORR1E LTR MaLR 1 359 0 6 1133 243 152 0 0 chr1 71845663 71845709 -125349723 + T-rich Low_complexity Low_complexity 1 46 0 6 1133 3074 90 18 64 chr1 71846628 71846851 -125348581 - RLTR23 LTR ERV1 0 430 209 6 1133 387 0 0 0 chr1 71846851 71846894 -125348538 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1133 3074 90 18 64 chr1 71846894 71847121 -125348311 - RLTR23 LTR ERV1 -222 208 1 6 1133 306 0 0 0 chr1 71847180 71847214 -125348218 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1133 306 0 0 0 chr1 71848987 71849021 -125346411 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6 1133 501 254 21 56 chr1 71849140 71849282 -125346150 - B1F SINE Alu 0 149 13 6 1133 487 376 112 33 chr1 71849292 71849781 -125345651 + L2 LINE L2 2555 3082 -337 6 1133 490 383 35 12 chr1 71850768 71851024 -125344408 - Lx8 LINE L1 -179 7294 7033 6 1133 342 96 39 0 chr1 71851073 71851125 -125344307 - 5S rRNA rRNA -30 91 38 6 1133 695 139 0 34 chr1 71851139 71851258 -125344174 + B1_Mur4 SINE Alu 35 149 -1 6 1133 1272 109 17 6 chr1 71851746 71851922 -125343510 + B2_Mm1t SINE B2 2 179 -14 6 1133 315 111 0 64 chr1 71851951 71852051 -125343381 + B2_Mm2 SINE B2 47 191 -4 6 1133 229 350 0 0 chr1 71852740 71852800 -125342632 - MER45R DNA Tip100 -1517 64 5 6 1133 256 299 0 44 chr1 71853225 71853316 -125342116 - B4A SINE B4 0 292 206 6 1133 183 42 0 0 chr1 71855058 71855082 -125340350 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 1133 461 301 69 25 chr1 71855331 71855491 -125339941 + B4A SINE B4 8 174 -118 6 1133 435 38 0 0 chr1 71855592 71855645 -125339787 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1133 1765 132 136 50 chr1 71856233 71856609 -125338823 + RMER17C LTR ERVK 3 410 0 6 1133 318 327 74 19 chr1 71856741 71856903 -125338529 - MLT1A1 LTR MaLR -237 171 1 6 1133 491 289 122 31 chr1 71856940 71857203 -125338229 + MER57F LTR ERV1 112 430 -6 6 1133 264 91 0 0 chr1 71857814 71857858 -125337574 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1133 183 80 0 0 chr1 71858696 71858721 -125336711 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1133 1151 176 5 14 chr1 71858791 71858998 -125336434 - RLTR17 LTR ERVK 0 692 488 6 1133 1211 152 31 9 chr1 71858994 71859220 -125336212 - RLTR17 LTR ERVK -460 232 2 6 1133 351 0 0 0 chr1 71859454 71859493 -125335939 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1133 237 247 18 7 chr1 71860993 71861063 -125334369 - MIR SINE MIR -135 141 73 6 1133 1252 266 68 35 chr1 71861508 71861964 -125333468 - Charlie4a DNA MER1_type -34 474 4 6 1133 207 0 0 0 chr1 71862714 71862737 -125332695 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1133 473 262 56 21 chr1 71863079 71863223 -125332209 - MER63B DNA AcHobo -19 417 269 6 1133 238 302 9 62 chr1 71863852 71863965 -125331467 - L1MB8 LINE L1 -110 6068 5962 6 1133 242 89 59 15 chr1 71864032 71864100 -125331332 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 6 1133 243 273 246 36 chr1 71864141 71864308 -125331124 - L1M3 LINE L1 -1099 5041 4840 6 1133 235 366 126 35 chr1 71864440 71864695 -125330737 + L3 LINE CR1 3481 3758 -731 6 1133 1302 28 0 0 chr1 71864705 71864846 -125330586 + B1_Mus2 SINE Alu 1 141 -6 6 1133 414 0 0 0 chr1 71864848 71864894 -125330538 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 6 1133 257 367 21 50 chr1 71865758 71865999 -125329433 + L3 LINE CR1 4014 4247 -242 6 1133 865 280 129 4 chr1 71866743 71867023 -125328409 + ORR1E LTR MaLR 1 315 -44 6 1133 45 0 0 0 chr1 71868013 71868058 -125327374 + AT_rich Low_complexity Low_complexity 1 45 0 6 1133 387 0 0 0 chr1 71868139 71868182 -125327250 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1133 689 319 49 15 chr1 71868228 71868495 -125326937 - B4A SINE B4 -16 276 1 6 1133 633 285 208 68 chr1 71869154 71869646 -125325786 + MLT2B3 LTR ERVL 134 715 -2 6 1133 825 249 98 0 chr1 71869661 71869854 -125325578 - B3 SINE B2 -3 213 2 6 1133 837 181 0 0 chr1 71869909 71870042 -125325390 + B1_Mus1 SINE Alu 5 137 -11 7 1133 831 189 6 25 chr1 71871736 71871893 -125323539 - ORR1D2 LTR MaLR 0 370 217 7 1133 399 280 11 11 chr1 71871897 71871991 -125323441 - ORR1D2 LTR MaLR -274 96 3 7 1133 541 289 0 0 chr1 71872030 71872144 -125323288 - PB1D9 SINE Alu -5 115 2 7 1133 1305 184 9 5 chr1 71873222 71873446 -125321986 + URR1B DNA MER1_type 1 225 0 7 1133 359 73 18 0 chr1 71873517 71873572 -125321860 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1133 543 246 90 14 chr1 71873576 71873720 -125321712 - RSINE1 SINE B4 -10 155 1 7 1133 762 263 25 55 chr1 71874671 71874908 -125320524 - MLT1C LTR MaLR -237 230 1 7 1133 1140 230 0 5 chr1 71875156 71875361 -125320071 + B3 SINE B2 3 206 -10 7 1133 216 0 0 0 chr1 71875756 71875780 -125319652 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1133 509 314 20 65 chr1 71876077 71876434 -125318998 - ORR1E LTR MaLR -31 339 3 7 1133 1297 41 7 0 chr1 71876533 71876680 -125318752 + B1_Mus1 SINE Alu 1 148 0 7 1133 432 97 0 0 chr1 71876889 71876951 -125318481 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1133 189 362 77 61 chr1 71877055 71877232 -125318200 + L2b LINE L2 3073 3240 -135 7 1133 747 0 0 0 chr1 71877232 71877315 -125318117 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 7 1133 189 362 77 61 chr1 71877315 71877434 -125317998 + L2b LINE L2 3241 3374 -1 7 1133 402 335 39 11 chr1 71877524 71877705 -125317727 + L1ME3 LINE L1 5930 6115 -47 7 1133 1087 272 22 22 chr1 71878475 71878753 -125316679 + B4A SINE B4 3 280 -12 7 1133 366 61 0 0 chr1 71878756 71878805 -125316627 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1133 307 216 9 9 chr1 71879611 71879723 -125315709 + (TG)n Simple_repeat Simple_repeat 2 113 0 7 1133 367 303 152 49 chr1 71879734 71879998 -125315434 - B4A SINE B4 0 292 2 7 1133 288 0 0 0 chr1 71880125 71880157 -125315275 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1133 210 105 0 0 chr1 71880361 71880399 -125315033 + (CAT)n Simple_repeat Simple_repeat 3 40 0 7 1133 419 337 66 58 chr1 71880427 71880683 -125314749 - B4A SINE B4 -14 278 21 7 1133 1969 179 42 8 chr1 71880683 71881039 -125314393 - ORR1C1 LTR MaLR 0 378 11 7 1133 312 219 0 0 chr1 71881153 71881235 -125314197 + GA-rich Low_complexity Low_complexity 3 84 0 7 1133 349 225 0 0 chr1 71882188 71882259 -125313173 - MER31-int LTR ERV1 -528 4408 4338 7 1133 319 229 142 3 chr1 71882663 71882795 -125312637 - Lx7 LINE L1 -13 5834 5692 7 1133 1619 62 0 10 chr1 71883049 71883246 -125312186 + B2_Mm2 SINE B2 1 195 0 7 1133 225 0 0 0 chr1 71884167 71884192 -125311240 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 7 1133 473 297 61 33 chr1 71884659 71884840 -125310592 - MTEa LTR MaLR -193 186 1 7 1133 429 267 191 43 chr1 71884894 71885035 -125310397 + RSINE1 SINE B4 4 165 0 7 1133 939 207 20 54 chr1 71885081 71885285 -125310147 + B3A SINE B2 1 197 -1 7 1133 1051 185 157 180 chr1 71885441 71885824 -125309608 + ORR1D1 LTR MaLR 1 374 0 7 1133 2755 92 67 8 chr1 71886216 71886588 -125308844 - ORR1B1 LTR MaLR 0 394 1 7 1133 254 352 71 85 chr1 71887015 71887440 -125307992 - MLT1J LTR MaLR -93 419 1 7 1133 705 181 224 112 chr1 71888346 71888632 -125306800 + ORR1D1 LTR MaLR 1 318 -56 7 1133 294 29 0 0 chr1 71888769 71888804 -125306628 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1133 270 0 0 0 chr1 71888804 71888833 -125306599 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1133 244 244 144 16 chr1 71890487 71890612 -125304820 + MIRb SINE MIR 44 184 -84 7 1133 249 33 0 0 chr1 71891071 71891101 -125304331 + (TAA)n Simple_repeat Simple_repeat 3 32 0 7 1133 257 0 30 0 chr1 71892208 71892241 -125303191 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 7 1133 764 203 0 14 chr1 71892309 71892454 -125302978 + B1_Mur2 SINE Alu 5 147 -2 7 1133 325 297 19 47 chr1 71892806 71892912 -125302520 + RSINE1 SINE B4 2 104 -61 7 1133 201 39 0 0 chr1 71892953 71892979 -125302453 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1133 305 24 24 0 chr1 71892979 71893021 -125302411 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 7 1133 977 284 30 4 chr1 71893096 71893365 -125302067 - B4 SINE B4 -12 280 5 7 1133 434 266 13 33 chr1 71893597 71893785 -125301647 - B3A SINE B2 -6 210 35 7 1133 562 282 0 15 chr1 71893991 71894124 -125301308 + B3A SINE B2 1 131 -67 7 1133 4559 292 74 25 chr1 71894368 71896407 -125299025 + L1MC3 LINE L1 5319 7458 -327 7 1133 808 278 78 39 chr1 71896429 71896687 -125298745 + B4A SINE B4 2 269 -23 7 1133 468 0 0 0 chr1 71896690 71896742 -125298690 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1133 387 0 0 0 chr1 71896742 71896784 -125298648 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1133 256 294 27 109 chr1 71896855 71897038 -125298394 + L1MC3 LINE L1 7549 7716 -69 7 1133 540 84 0 0 chr1 71897070 71897153 -125298279 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 1133 636 222 209 39 chr1 71897155 71897385 -125298047 - B4 SINE B4 -23 269 1 7 1133 204 125 0 0 chr1 71899041 71899073 -125296359 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1133 3860 151 37 16 chr1 71899111 71899786 -125295646 - RLTR17 LTR ERVK 0 692 4 7 1133 288 111 0 0 chr1 71899786 71899831 -125295601 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1133 643 255 58 34 chr1 71899999 71900206 -125295226 + B3 SINE B2 1 212 -4 7 1133 1306 295 78 12 chr1 71900279 71900767 -125294665 - MLT2B1 LTR ERVL 0 520 1 7 1133 221 0 0 33 chr1 71901984 71902014 -125293418 + (CATA)n Simple_repeat Simple_repeat 2 30 0 7 1133 32 0 0 0 chr1 71902391 71902423 -125293009 + AT_rich Low_complexity Low_complexity 1 32 0 7 1133 352 256 0 0 chr1 71902551 71902818 -125292614 + (TG)n Simple_repeat Simple_repeat 1 267 0 7 1133 276 276 0 38 chr1 71903033 71903112 -125292320 - B4 SINE B4 -174 118 43 7 1133 304 326 47 37 chr1 71903129 71903320 -125292112 + HAL1-3A_ME LINE L1 2284 2476 -382 7 1133 4081 192 44 13 chr1 71903388 71904181 -125291251 + Lx7 LINE L1 6434 7251 -445 7 1133 2688 3 0 0 chr1 71904245 71904539 -125290893 + L1Md_A LINE L1 6289 6582 0 7 1133 252 271 372 7 chr1 71904758 71904903 -125290529 + B4 SINE B4 89 286 -6 7 1133 915 155 192 6 chr1 71905045 71905227 -125290205 - B3 SINE B2 0 216 1 7 1133 305 244 158 31 chr1 71905946 71906073 -125289359 + L1MEf LINE L1 1613 1755 -4445 7 1133 606 254 30 0 chr1 71906231 71906365 -125289067 - ID_B1 SINE B4 -20 204 67 7 1133 2208 25 3 0 chr1 71906511 71906796 -125288636 + RLTR10 LTR ERVK 1 286 -104 7 1133 1916 134 51 9 chr1 71907271 71907587 -125287845 + ORR1A4 LTR MaLR 1 329 0 7 1133 271 115 38 25 chr1 71908192 71908208 -125287224 + (TG)n Simple_repeat Simple_repeat 1 16 0 7 1133 1976 120 43 17 chr1 71908208 71908557 -125286875 - RLTR15 LTR ERVK 0 359 2 7 1133 271 115 38 25 chr1 71908557 71908620 -125286812 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1133 803 215 10 36 chr1 71908642 71908835 -125286597 - B3A SINE B2 -10 188 1 7 1133 192 77 0 0 chr1 71909156 71909182 -125286250 + (TCC)n Simple_repeat Simple_repeat 3 28 0 7 1133 2288 60 23 97 chr1 71909629 71909980 -125285452 + IAPLTR2b LTR ERVK 1 325 -2 7 1133 22 56 0 0 chr1 71911185 71911221 -125284211 + AT_rich Low_complexity Low_complexity 1 36 0 7 1133 234 150 0 0 chr1 71912854 71912894 -125282538 + (TTA)n Simple_repeat Simple_repeat 2 41 0 7 1133 370 306 19 89 chr1 71913551 71913709 -125281723 + B4A SINE B4 1 147 -145 7 1133 225 0 0 0 chr1 71914590 71914615 -125280817 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1133 1799 198 41 8 chr1 71915370 71915762 -125279670 - MTD LTR MaLR -14 405 1 7 1133 21 57 0 0 chr1 71915852 71915887 -125279545 + AT_rich Low_complexity Low_complexity 1 35 0 7 1133 2410 82 182 0 chr1 71916268 71916670 -125278762 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1133 285 27 0 0 chr1 71916672 71916709 -125278723 - tRNA-Phe-TTY tRNA tRNA 0 76 40 7 1133 367 73 0 18 chr1 71916717 71916773 -125278659 - RLTR10-int LTR ERVK -1930 57 3 7 1133 2367 98 57 42 chr1 71916775 71917180 -125278252 - IAPLTR2a LTR ERVK 0 411 1 7 1133 351 310 60 121 chr1 71917208 71917523 -125277909 + MLT1C LTR MaLR 172 467 0 7 1133 208 355 35 28 chr1 71918119 71918261 -125277171 + L2a LINE L2 3218 3360 -66 7 1133 230 161 0 51 chr1 71919165 71919224 -125276208 + T-rich Low_complexity Low_complexity 2 57 0 7 1133 185 214 0 35 chr1 71919637 71919695 -125275737 + G-rich Low_complexity Low_complexity 4 59 0 7 1133 745 224 0 0 chr1 71920341 71920484 -125274948 + B1_Mur1 SINE Alu 2 144 -5 7 1133 467 313 128 47 chr1 71920636 71920894 -125274538 - MTE2a LTR MaLR -5 374 96 7 1133 191 36 36 0 chr1 71920896 71920924 -125274508 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 7 1133 773 173 22 0 chr1 71920925 71921064 -125274368 + B1_Mus2 SINE Alu 1 142 -5 7 1133 406 188 0 19 chr1 71921081 71921184 -125274248 + GA-rich Low_complexity Low_complexity 3 103 0 7 1133 181 200 46 0 chr1 71921220 71921285 -125274147 + A-rich Low_complexity Low_complexity 5 72 0 7 1133 422 243 28 0 chr1 71921305 71921412 -125274020 - MTE2a LTR MaLR -308 111 2 7 1133 23 0 0 0 chr1 71921875 71921898 -125273534 + AT_rich Low_complexity Low_complexity 1 23 0 7 1133 1158 44 0 0 chr1 71922007 71922142 -125273290 + B1_Mm SINE Alu 1 135 -12 7 1133 586 25 25 0 chr1 71922142 71922222 -125273210 + (GAAAA)n Simple_repeat Simple_repeat 3 84 0 7 1133 528 81 0 0 chr1 71922223 71922297 -125273135 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 7 1133 580 285 7 0 chr1 71922302 71922439 -125272993 + B3A SINE B2 1 138 -60 8 1133 377 20 20 0 chr1 71922455 71922505 -125272927 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1133 226 243 28 30 chr1 71922934 71923010 -125272422 - MIR SINE MIR -94 174 97 8 1133 181 325 127 0 chr1 71925697 71925823 -125269609 + L2a LINE L2 2751 2892 -527 8 1133 3139 35 0 0 chr1 71925960 71926328 -125269104 + L1Md_F3 LINE L1 6206 6573 -11 8 1133 251 298 41 16 chr1 71926425 71926548 -125268884 + L2a LINE L2 3253 3378 -48 8 1133 252 309 24 0 chr1 71926672 71926756 -125268676 + L2a LINE L2 3338 3423 -3 8 1133 432 0 0 0 chr1 71927725 71927773 -125267659 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1133 314 347 84 35 chr1 71928382 71928609 -125266823 + RMER17C LTR ERVK 124 361 -49 8 1133 336 24 0 0 chr1 71928822 71928863 -125266569 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1133 182 128 0 25 chr1 71928870 71928910 -125266522 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1133 588 287 133 9 chr1 71930244 71930462 -125264970 + MLT1E LTR MaLR 8 252 -401 8 1133 198 0 0 0 chr1 71930487 71930509 -125264923 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1133 592 195 2 9 chr1 71930509 71930629 -125264803 - B1_Mus1 SINE Alu -13 137 15 8 1133 332 240 46 83 chr1 71930540 71930649 -125264783 - MT2B LTR ERVL -344 257 153 8 1133 421 288 97 35 chr1 71930887 71931146 -125264286 - Lx8 LINE L1 -959 6514 6240 8 1133 417 123 0 0 chr1 71931219 71931284 -125264148 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 8 1133 202 345 0 0 chr1 71931285 71931343 -125264089 + GA-rich Low_complexity Low_complexity 1 58 0 8 1133 617 332 123 11 chr1 71932528 71932909 -125262523 - RMER15-int LTR ERVL -3353 1646 1223 8 1133 192 77 0 0 chr1 71933246 71933272 -125262160 + (ATG)n Simple_repeat Simple_repeat 2 27 0 8 1133 231 307 26 26 chr1 71933311 71933388 -125262044 - RMER15 LTR ERVL -157 418 342 8 1133 1058 114 52 37 chr1 71933931 71934122 -125261310 + B2_Mm2 SINE B2 2 195 0 8 1133 1127 82 7 0 chr1 71935498 71935644 -125259788 - B1_Mm SINE Alu 0 147 1 8 1133 26 0 0 0 chr1 71935957 71935983 -125259449 + AT_rich Low_complexity Low_complexity 1 26 0 8 1133 200 35 35 0 chr1 71936140 71936169 -125259263 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1133 636 222 209 39 chr1 71936171 71936401 -125259031 - B4 SINE B4 -23 269 1 8 1133 546 288 6 66 chr1 71936895 71937077 -125258355 - B4A SINE B4 -121 171 1 8 1133 766 177 0 34 chr1 71937509 71937655 -125257777 + B1_Mus2 SINE Alu 5 145 -2 8 1133 1227 160 27 9 chr1 71939073 71939294 -125256138 - URR1B DNA MER1_type 0 225 1 8 1133 825 254 14 32 chr1 71939485 71939705 -125255727 - B3 SINE B2 0 216 1 8 1133 538 292 14 7 chr1 71939942 71940090 -125255342 + RSINE1 SINE B4 4 152 -13 8 1133 3407 40 2 0 chr1 71940661 71941056 -125254376 + MTA_Mm LTR MaLR 1 396 0 8 1133 399 198 47 0 chr1 71941189 71941295 -125254137 - HAL1-2a_MD LINE L1 -579 2445 2335 8 1133 809 289 58 19 chr1 71941299 71941557 -125253875 + B4 SINE B4 10 277 -15 8 1133 279 0 0 0 chr1 71941557 71941588 -125253844 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 8 1133 180 0 0 0 chr1 71943589 71943609 -125251823 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1133 356 72 0 35 chr1 71945493 71945551 -125249881 + L1_Mus2 LINE L1 6511 6566 0 8 1133 242 68 0 43 chr1 71946028 71946074 -125249358 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1133 370 302 111 12 chr1 71946860 71947031 -125248401 - MER5A DNA MER1_type -1 188 1 8 1133 260 294 0 0 chr1 71947444 71947512 -125247920 + ID4 SINE ID 3 70 -13 8 1133 854 185 0 8 chr1 71947515 71947761 -125247671 + GA-rich Low_complexity Low_complexity 1 243 0 8 1133 274 361 0 61 chr1 71948203 71948318 -125247114 + PB1D10 SINE Alu 1 108 -9 8 1133 388 299 176 34 chr1 71948459 71948964 -125246468 + L1M5 LINE L1 2366 2942 -3204 8 1133 369 236 116 18 chr1 71949010 71949122 -125246310 + RSINE1 SINE B4 4 126 -39 8 1133 188 35 35 0 chr1 71949488 71949517 -125245915 + (TTG)n Simple_repeat Simple_repeat 2 31 0 8 1133 277 219 26 40 chr1 71950712 71950788 -125244644 - ID4_ SINE ID -8 75 1 8 1133 279 0 0 0 chr1 71950866 71950897 -125244535 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1133 303 250 14 0 chr1 71950897 71950969 -125244463 - ID4_ SINE ID -5 78 6 8 1133 204 40 0 0 chr1 71951472 71951497 -125243935 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1133 356 303 140 49 chr1 71951719 71951983 -125243449 + B4A SINE B4 2 289 -3 8 1133 273 119 0 0 chr1 71951984 71952026 -125243406 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1133 4176 73 6 2 chr1 71952142 71952687 -125242745 - L1_Mus3 LINE L1 -1 6637 6091 8 1133 710 182 29 7 chr1 71952735 71952873 -125242559 - B1_Mus2 SINE Alu 0 147 7 8 1133 433 294 6 67 chr1 71952873 71952898 -125242534 - ID_B1 SINE B4 0 223 71 8 1133 840 174 7 0 chr1 71953021 71953165 -125242267 - B1_Mur4 SINE Alu 0 150 6 8 1133 2606 281 112 11 chr1 71953171 71954047 -125241385 - Lx8 LINE L1 -116 7357 6394 8 1133 7556 148 30 8 chr1 71954041 71955333 -125240099 + L1_Mur2 LINE L1 3976 5296 -581 8 1133 1627 32 0 11 chr1 71955333 71955523 -125239909 + B2_Mm1a SINE B2 1 188 -5 8 1133 2587 147 48 24 chr1 71955534 71956036 -125239396 - RLTR12A LTR ERVK -54 514 1 8 1133 953 83 7 0 chr1 71956657 71956802 -125238630 + (TG)n Simple_repeat Simple_repeat 1 146 0 8 1133 26 0 0 0 chr1 71957124 71957150 -125238282 + AT_rich Low_complexity Low_complexity 1 26 0 8 1133 237 132 0 0 chr1 71957210 71957248 -125238184 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1133 2645 116 73 17 chr1 71957248 71957717 -125237715 + RMER6A LTR ERVK 1 517 -203 8 1133 956 123 7 0 chr1 71957717 71957872 -125237560 + (GA)n Simple_repeat Simple_repeat 1 156 0 8 1133 1955 173 140 21 chr1 71957872 71958020 -125237412 + RMER6A LTR ERVK 518 750 -6 8 1133 568 119 252 2 chr1 71958054 71958177 -125237255 - RMER19A LTR ERVK -462 149 1 8 1133 499 206 21 0 chr1 71958251 71958348 -125237084 + PB1D10 SINE Alu 14 112 -5 8 1134 222 37 0 0 chr1 71959115 71959142 -125236290 + (G)n Simple_repeat Simple_repeat 1 27 0 8 1134 1473 199 70 19 chr1 71960130 71960168 -125235264 + MTD LTR MaLR 42 78 -341 8 1134 1079 252 34 60 chr1 71960168 71960548 -125234884 + ORR1D2 LTR MaLR 1 370 0 8 1134 1473 199 70 19 chr1 71960548 71960868 -125234564 + MTD LTR MaLR 79 418 -1 8 1134 624 91 0 0 chr1 71961381 71961469 -125233963 + (GGAA)n Simple_repeat Simple_repeat 4 91 0 8 1134 801 289 67 15 chr1 71961716 71961986 -125233446 - B4A SINE B4 0 292 9 8 1134 210 299 58 29 chr1 71962503 71962572 -125232860 + RSINE1 SINE B4 3 73 -92 8 1134 414 0 0 0 chr1 71962647 71962693 -125232739 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1134 276 30 0 0 chr1 71962836 71962869 -125232563 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1134 315 71 0 0 chr1 71962869 71962911 -125232521 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1134 525 250 45 0 chr1 71962935 71963047 -125232385 - RSINE1 SINE B4 -46 119 3 8 1134 234 0 0 0 chr1 71964483 71964509 -125230923 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1134 351 130 0 0 chr1 71964509 71964563 -125230869 - B1_Mm SINE Alu -11 136 83 8 1134 1884 199 52 5 chr1 71964867 71965260 -125230172 + MTD LTR MaLR 5 407 -12 8 1134 21 0 0 0 chr1 71966125 71966146 -125229286 + AT_rich Low_complexity Low_complexity 1 21 0 8 1134 810 0 0 0 chr1 71967852 71967942 -125227490 + (CTGTG)n Simple_repeat Simple_repeat 3 92 0 8 1134 1385 6 6 0 chr1 71967942 71968104 -125227328 + (CTCTG)n Simple_repeat Simple_repeat 4 166 0 8 1134 580 186 23 6 chr1 71969611 71969784 -125225648 + CT-rich Low_complexity Low_complexity 1 176 0 8 1134 430 300 173 12 chr1 71970364 71970607 -125224825 - MLT1F LTR MaLR -91 457 176 8 1134 309 329 43 7 chr1 71970807 71970948 -125224484 - L1MDa LINE L1 -4054 2579 2434 8 1134 246 302 38 0 chr1 71971178 71971284 -125224148 + L1MEf LINE L1 723 832 -5368 8 1134 268 328 30 64 chr1 71972466 71972668 -125222764 - MLT1L LTR MaLR 0 610 416 8 1134 312 27 0 0 chr1 71972790 71972827 -125222605 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1134 369 0 0 0 chr1 71972827 71972867 -125222565 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1134 531 0 0 0 chr1 71973315 71973374 -125222058 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1134 775 302 31 28 chr1 71974007 71974293 -125221139 - B4 SINE B4 -5 287 1 8 1134 24 32 0 0 chr1 71974857 71974888 -125220544 + AT_rich Low_complexity Low_complexity 1 31 0 8 1134 1097 112 46 23 chr1 71974888 71975062 -125220370 + B2_Mm1t SINE B2 2 179 -14 8 1134 387 93 321 36 chr1 71975109 71975221 -125220211 + B2_Mm2 SINE B2 47 190 -5 8 1134 423 311 108 23 chr1 71975491 71975833 -125219599 - MLT1B LTR MaLR -19 371 1 8 1134 1214 49 0 0 chr1 71976565 71976708 -125218724 - L1Md_F2 LINE L1 -332 6250 6108 8 1134 2426 75 30 15 chr1 71976710 71977046 -125218386 + L1Md_F2 LINE L1 6239 6579 -3 8 1134 793 186 238 0 chr1 71977343 71977515 -125217917 - B3 SINE B2 -3 213 1 8 1134 908 204 77 0 chr1 71977861 71978057 -125217375 - B3 SINE B2 -5 211 1 8 1134 21 0 0 0 chr1 71978324 71978345 -125217087 + AT_rich Low_complexity Low_complexity 1 21 0 8 1134 899 96 7 0 chr1 71979204 71979339 -125216093 + B1_Mur4 SINE Alu 9 144 -6 8 1134 387 0 0 0 chr1 71979340 71979383 -125216049 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1134 609 14 0 0 chr1 71979383 71979452 -125215980 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1134 392 191 11 0 chr1 71979577 71979671 -125215761 + (TA)n Simple_repeat Simple_repeat 2 96 0 9 1134 180 176 0 0 chr1 71979710 71979744 -125215688 + (CATA)n Simple_repeat Simple_repeat 3 36 0 9 1134 762 233 0 7 chr1 71980370 71980521 -125214911 + B3A SINE B2 2 151 -47 9 1134 453 81 0 0 chr1 71980527 71980589 -125214843 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1134 2847 31 79 3 chr1 71980723 71981079 -125214353 - L1Md_F2 LINE L1 -1 6581 6199 9 1134 567 0 0 0 chr1 71981225 71981288 -125214144 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 9 1134 415 308 62 0 chr1 71981292 71981422 -125214010 - B1F SINE Alu -11 138 1 9 1134 1304 253 64 32 chr1 71982249 71982719 -125212713 + RMER5 LTR ERV1 33 517 -17 9 1134 240 35 0 0 chr1 71983822 71983851 -125211581 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1134 289 338 44 15 chr1 71984129 71984264 -125211168 + MIRb SINE MIR 51 189 -79 9 1134 263 171 18 45 chr1 71985088 71985198 -125210234 + GA-rich Low_complexity Low_complexity 3 109 0 9 1134 615 159 0 0 chr1 71985957 71986070 -125209362 + CT-rich Low_complexity Low_complexity 2 114 0 9 1134 714 172 94 0 chr1 71986622 71986750 -125208682 + B1_Mur4 SINE Alu 3 142 -8 9 1134 390 21 0 0 chr1 71986750 71986797 -125208635 + (CATA)n Simple_repeat Simple_repeat 2 48 0 9 1134 1064 209 39 0 chr1 71986838 71987044 -125208388 + B3 SINE B2 2 215 -1 9 1134 351 0 0 0 chr1 71989196 71989235 -125206197 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 9 1134 872 117 0 7 chr1 71989258 71989396 -125206036 - B1_Mur4 SINE Alu 0 150 14 9 1134 334 134 0 29 chr1 71990899 71990968 -125204464 + CT-rich Low_complexity Low_complexity 6 72 0 9 1134 262 309 10 0 chr1 71990972 71991069 -125204363 + (CTA)n Simple_repeat Simple_repeat 2 99 0 9 1134 399 312 9 0 chr1 71992645 71992757 -125202675 - PB1D10 SINE Alu 0 117 5 9 1134 641 226 11 14 chr1 71992775 71993048 -125202384 + CT-rich Low_complexity Low_complexity 1 272 0 9 1134 423 235 50 10 chr1 71993054 71993153 -125202279 - B1_Mur3 SINE Alu -43 106 4 9 1134 1158 296 49 43 chr1 71993158 71993666 -125201766 - L1M2 LINE L1 -819 5324 4814 9 1134 711 246 7 14 chr1 71993835 71993983 -125201449 + Lx8 LINE L1 7151 7297 -176 9 1134 447 229 55 0 chr1 71994305 71994429 -125201003 + L1MB4 LINE L1 6053 6183 0 9 1134 748 212 15 0 chr1 71994659 71994796 -125200636 + B1_Mus1 SINE Alu 2 140 -8 9 1134 432 0 0 0 chr1 71994800 71994848 -125200584 + (GAGAA)n Simple_repeat Simple_repeat 3 50 0 9 1134 624 181 80 80 chr1 71995227 71995377 -125200055 - B1_Mur3 SINE Alu 0 150 1 9 1134 237 287 95 11 chr1 71995540 71995635 -125199797 - MIR SINE MIR -141 121 19 9 1134 471 216 0 0 chr1 71995647 71995758 -125199674 + (TATG)n Simple_repeat Simple_repeat 2 112 0 9 1134 324 242 157 45 chr1 71995864 71995998 -125199434 + B1F2 SINE Alu 1 149 0 9 1134 270 291 149 44 chr1 71996050 71996298 -125199134 - MLT1D LTR MaLR -135 370 97 9 1134 1698 52 0 0 chr1 71996540 71996750 -125198682 - L1Md_T LINE L1 0 6582 6373 9 1134 200 35 35 0 chr1 71996989 71997018 -125198414 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 1134 2057 265 23 133 chr1 71997025 71997354 -125198078 - Lx5 LINE L1 -21 7029 6741 9 1134 653 66 11 0 chr1 71997354 71997445 -125197987 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 9 1134 2057 265 23 133 chr1 71997445 71997713 -125197719 - Lx5 LINE L1 -310 6740 6489 9 1134 885 66 22 14 chr1 71997713 71997851 -125197581 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 9 1134 2057 265 23 133 chr1 71997851 71998080 -125197352 - Lx5 LINE L1 -562 6488 6295 9 1134 195 42 0 0 chr1 71998203 71998227 -125197205 + (CCAA)n Simple_repeat Simple_repeat 3 26 0 9 1134 315 0 0 0 chr1 71998456 71998491 -125196941 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 1134 1698 76 34 8 chr1 71998495 71998734 -125196698 - L1_Mus1 LINE L1 -7 6560 6316 9 1134 415 331 15 7 chr1 71999154 71999291 -125196141 + MER63A DNA AcHobo 15 152 -58 9 1134 253 274 10 84 chr1 71999608 71999742 -125195690 - L2b LINE L2 -252 3135 3009 9 1134 217 336 41 32 chr1 72000285 72000408 -125195024 - L2b LINE L2 -183 3192 3069 1 1134 1153 37 0 0 chr1 72001039 72001173 -125194259 + B1_Mus2 SINE Alu 1 134 -13 2 1134 243 0 0 0 chr1 72001173 72001200 -125194232 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 3 1134 727 242 49 25 chr1 72001204 72001407 -125194025 - B3 SINE B2 -7 209 2 4 1134 445 279 16 39 chr1 72001686 72001813 -125193619 + RSINE1 SINE B4 12 135 -30 5 1134 495 267 65 100 chr1 72002017 72002217 -125193215 + B3A SINE B2 6 198 0 6 1134 1174 207 14 5 chr1 72002267 72002481 -125192951 + B3 SINE B2 1 216 0 7 1134 815 145 7 14 chr1 72004876 72005016 -125190416 - B1_Mur3 SINE Alu 0 149 11 8 1134 227 311 0 0 chr1 72005074 72005135 -125190297 - ID4_ SINE ID -8 75 15 9 1134 248 267 108 33 chr1 72005471 72005591 -125189841 - RMER15 LTR ERVL 0 575 447 1 1134 236 53 26 0 chr1 72006654 72006692 -125188740 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1134 387 346 25 25 chr1 72006728 72006885 -125188547 + RSINE1 SINE B4 7 163 -2 1 1134 633 194 0 32 chr1 72006886 72007072 -125188360 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1134 292 269 15 0 chr1 72007137 72007204 -125188228 - ID4_ SINE ID -4 79 12 1 1134 517 237 89 0 chr1 72007232 72007367 -125188065 - B1F SINE Alu -1 148 2 1 1134 185 288 163 46 chr1 72009216 72009369 -125186063 + MER5B DNA MER1_type 5 175 -3 1 1134 650 247 75 48 chr1 72010501 72010688 -125184744 - B3A SINE B2 -1 197 6 1 1134 1199 97 22 17 chr1 72012315 72012493 -125182939 + B2_Mm2 SINE B2 3 181 -14 1 1134 226 333 44 0 chr1 72012668 72012758 -125182674 - MLT1F2 LTR MaLR -95 465 372 1 1134 957 249 41 26 chr1 72015137 72015405 -125180027 + B4A SINE B4 21 292 0 2 1134 384 243 0 0 chr1 72015408 72015519 -125179913 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1134 753 187 34 34 chr1 72015595 72015772 -125179660 - B2_Mm2 SINE B2 -18 177 1 2 1134 490 248 0 0 chr1 72015860 72015961 -125179471 + PB1 SINE Alu 10 110 -17 2 1134 883 274 39 43 chr1 72016486 72016533 -125178899 - B4 SINE B4 -36 256 217 2 1134 375 89 0 0 chr1 72016533 72016589 -125178843 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 2 1134 883 274 39 43 chr1 72016589 72016797 -125178635 - B4 SINE B4 -76 216 2 2 1134 315 0 0 0 chr1 72016824 72016859 -125178573 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1134 337 314 16 0 chr1 72017835 72017959 -125177473 + MER5A1 DNA MER1_type 38 163 -3 2 1134 665 210 12 0 chr1 72019222 72019384 -125176048 + GA-rich Low_complexity Low_complexity 2 165 0 2 1134 935 127 6 0 chr1 72019384 72019557 -125175875 + (GAGAA)n Simple_repeat Simple_repeat 5 178 0 2 1134 367 335 59 18 chr1 72019760 72019979 -125175453 + L1_Rod LINE L1 914 1141 -6467 3 1134 1209 297 64 12 chr1 72019996 72020593 -125174839 + L1_Rod LINE L1 1171 1804 -4043 3 1134 1266 313 100 21 chr1 72020589 72021167 -125174265 + Lx8 LINE L1 6831 7454 -19 3 1134 638 294 48 26 chr1 72021860 72022084 -125173348 + B4 SINE B4 2 230 -62 3 1134 365 250 12 0 chr1 72022084 72022164 -125173268 + ID4_ SINE ID 3 83 0 3 1134 269 347 110 45 chr1 72022174 72022328 -125173104 + RSINE1 SINE B4 2 165 0 3 1134 333 0 0 0 chr1 72022422 72022459 -125172973 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1134 399 125 0 0 chr1 72022459 72022530 -125172902 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1134 180 0 0 0 chr1 72022995 72023015 -125172417 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1134 782 260 47 118 chr1 72023021 72023318 -125172114 + B4 SINE B4 11 286 -6 3 1134 246 295 31 21 chr1 72023635 72023732 -125171700 - MER21B LTR ERV1 -152 711 614 3 1134 438 306 103 112 chr1 72023733 72024288 -125171144 - MER77 LTR ERVL -4 603 54 4 1134 436 279 100 46 chr1 72024841 72025062 -125170370 - MLT1A0 LTR MaLR 0 365 132 4 1134 802 193 58 47 chr1 72025062 72025252 -125170180 + B3 SINE B2 1 192 -24 4 1134 418 235 10 19 chr1 72025273 72025377 -125170055 - MLT1A0 LTR MaLR -218 147 45 4 1134 400 290 32 49 chr1 72025686 72025871 -125169561 - Tigger16b DNA Tigger -28 309 128 4 1134 486 0 0 0 chr1 72025874 72025928 -125169504 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1134 282 286 215 21 chr1 72026048 72026135 -125169297 + MLT1K LTR MaLR 8 104 -491 4 1134 423 0 0 0 chr1 72026135 72026182 -125169250 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1134 282 286 215 21 chr1 72026182 72026280 -125169152 + MLT1K LTR MaLR 105 229 -366 4 1134 387 0 0 0 chr1 72026987 72027030 -125168402 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1134 276 30 0 0 chr1 72027030 72027062 -125168370 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1134 656 111 9 0 chr1 72027752 72027860 -125167572 + (TGGA)n Simple_repeat Simple_repeat 1 109 0 4 1134 331 200 42 28 chr1 72028360 72028432 -125167000 + RSINE1 SINE B4 5 77 -88 5 1134 393 22 0 0 chr1 72028489 72028535 -125166897 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1134 375 23 0 0 chr1 72028535 72028578 -125166854 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1134 24 32 0 0 chr1 72028578 72028609 -125166823 + AT_rich Low_complexity Low_complexity 1 31 0 5 1134 643 276 90 53 chr1 72028886 72029131 -125166301 + MLT2B4 LTR ERVL 1 254 -302 5 1134 203 88 29 0 chr1 72029320 72029354 -125166078 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1134 272 282 29 66 chr1 72029400 72029506 -125165926 + MLT1-int LTR MaLR 2 103 -1632 5 1134 198 0 0 0 chr1 72029787 72029809 -125165623 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 1134 432 250 192 0 chr1 72030268 72030388 -125165044 - ID_B1 SINE B4 0 224 82 5 1134 261 222 56 0 chr1 72030398 72030470 -125164962 + MLT1-int LTR MaLR 199 274 -1461 5 1134 645 238 21 52 chr1 72030494 72030685 -125164747 + B3A SINE B2 1 185 -13 5 1134 228 315 117 8 chr1 72030721 72030849 -125164583 + MLT1-int LTR MaLR 309 450 -921 6 1134 335 318 114 0 chr1 72030884 72031016 -125164416 - ID_B1 SINE B4 -1 223 77 6 1134 438 318 109 19 chr1 72031000 72031257 -125164175 + MLT1-int LTR MaLR 430 709 -662 6 1134 495 301 124 43 chr1 72031332 72031655 -125163777 - Lx8 LINE L1 -6 7467 7119 6 1134 405 58 0 0 chr1 72031658 72031710 -125163722 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1134 428 290 6 127 chr1 72031754 72031840 -125163592 - B4 SINE B4 0 292 212 6 1134 847 200 48 113 chr1 72031840 72032071 -125163361 - B3 SINE B2 0 216 1 6 1134 428 290 6 127 chr1 72032071 72032142 -125163290 - B4 SINE B4 -81 211 154 6 1134 1229 200 65 104 chr1 72032152 72032632 -125162800 - MT2B LTR ERVL 0 601 12 6 1134 253 239 59 15 chr1 72032634 72032702 -125162730 - B4A SINE B4 -131 161 91 6 1134 948 92 13 13 chr1 72032915 72033069 -125162363 + RLTR28 LTR ERVL 1 154 -370 6 1134 1537 180 257 16 chr1 72033092 72033461 -125161971 + RLTR20B1 LTR ERVK 1 453 -107 6 1134 612 40 0 0 chr1 72033461 72033536 -125161896 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1134 283 236 205 0 chr1 72033536 72033610 -125161822 + RLTR20B1 LTR ERVK 442 533 -1 6 1134 1601 156 44 18 chr1 72033611 72033951 -125161481 + RLTR28 LTR ERVL 162 510 -14 7 1134 229 267 0 16 chr1 72035262 72035323 -125160109 + CT-rich Low_complexity Low_complexity 3 62 0 7 1134 211 214 0 0 chr1 72035293 72035335 -125160097 + T-rich Low_complexity Low_complexity 2 43 0 7 1134 305 247 0 0 chr1 72035350 72035427 -125160005 - PB1D10 SINE Alu -40 77 1 7 1134 996 128 66 6 chr1 72035571 72035752 -125159680 - URR1A DNA MER1_type 0 226 35 7 1134 21 0 0 0 chr1 72036861 72036882 -125158550 + AT_rich Low_complexity Low_complexity 1 21 0 7 1134 241 290 0 14 chr1 72038594 72038664 -125156768 + CT-rich Low_complexity Low_complexity 2 70 0 7 1134 5074 48 0 2 chr1 72038796 72039424 -125156008 + L1_Mm LINE L1 3786 4412 -1471 7 1134 441 273 1 169 chr1 72039601 72039761 -125155671 + RSINE1 SINE B4 3 136 -29 7 1134 30 27 0 0 chr1 72039857 72039894 -125155538 + AT_rich Low_complexity Low_complexity 1 37 0 7 1134 1605 31 16 0 chr1 72039914 72040105 -125155327 + B2_Mm2 SINE B2 2 195 0 8 1134 247 414 29 6 chr1 72041080 72041250 -125154182 - MIRb SINE MIR -78 190 17 8 1134 510 17 0 0 chr1 72043159 72043218 -125152214 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1134 569 336 39 25 chr1 72043393 72043677 -125151755 - B4A SINE B4 -4 288 1 8 1134 228 321 71 0 chr1 72043754 72043838 -125151594 - LTR16C LTR ERVL -14 475 386 8 1134 1304 71 53 21 chr1 72044029 72044217 -125151215 + B2_Mm2 SINE B2 2 195 0 8 1134 268 200 197 13 chr1 72044807 72044883 -125150549 + PB1D10 SINE Alu 14 103 -14 8 1134 1174 65 107 0 chr1 72046683 72046852 -125148580 + Lx9 LINE L1 7306 7492 -152 8 1134 662 179 60 27 chr1 72046853 72046946 -125148486 - RLTR20C LTR ERVK 0 578 481 8 1134 375 23 0 0 chr1 72046946 72046990 -125148442 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1134 662 179 60 27 chr1 72046990 72047045 -125148387 - RLTR20C LTR ERVK -98 480 426 8 1134 1096 157 100 60 chr1 72047046 72047345 -125148087 - RLTR20C LTR ERVK -223 311 1 8 1134 238 149 0 0 chr1 72047348 72047395 -125148037 + Lx9 LINE L1 7497 7543 -101 9 1134 404 129 75 0 chr1 72047692 72047785 -125147647 + Lx9 LINE L1 7544 7643 -1 9 1134 197 210 16 0 chr1 72048424 72048486 -125146946 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1134 825 237 106 86 chr1 72048501 72048964 -125146468 + RMER2 LTR ERV1 1 567 0 9 1134 496 343 55 41 chr1 72049406 72049625 -125145807 - MLT1G1 LTR MaLR -330 249 6 9 1134 361 260 55 55 chr1 72049632 72049754 -125145678 + RSINE1 SINE B4 3 122 -43 9 1134 306 0 0 0 chr1 72049754 72049788 -125145644 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1134 361 260 55 55 chr1 72049788 72049828 -125145604 + RSINE1 SINE B4 123 164 -1 9 1134 34 24 0 0 chr1 72053842 72053883 -125141549 + AT_rich Low_complexity Low_complexity 1 41 0 9 1134 774 279 50 5 chr1 72054791 72055011 -125140421 + B4A SINE B4 1 230 -62 9 1134 564 89 0 0 chr1 72055097 72055176 -125140256 + (CA)n Simple_repeat Simple_repeat 1 79 0 9 1134 192 225 191 29 chr1 72055931 72056036 -125139396 - MIRc SINE MIR -135 133 12 9 1134 1684 21 5 0 chr1 72056848 72057040 -125138392 - B2_Mm1t SINE B2 0 193 1 1 1134 211 194 0 0 chr1 72057193 72057229 -125138203 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 1134 582 216 17 0 chr1 72057231 72057407 -125138025 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1134 714 173 24 12 chr1 72057382 72057552 -125137880 + (TATG)n Simple_repeat Simple_repeat 3 174 0 1 1134 517 149 175 0 chr1 72057955 72058069 -125137363 + URR1B DNA MER1_type 92 225 0 1 1134 242 27 81 0 chr1 72058144 72058181 -125137251 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1134 884 177 0 0 chr1 72058188 72058329 -125137103 + B1_Mus1 SINE Alu 3 143 -5 1 1134 499 294 28 14 chr1 72058434 72058579 -125136853 - B1F SINE Alu 0 149 3 1 1134 279 0 0 0 chr1 72058718 72058749 -125136683 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1134 382 311 67 72 chr1 72058823 72059031 -125136401 - B4A SINE B4 -74 218 12 1 1134 271 185 37 12 chr1 72059203 72059285 -125136147 - MER34A LTR ERV1 -66 505 422 1 1134 264 252 137 77 chr1 72059476 72059644 -125135788 - MER34A LTR ERV1 -298 244 67 1 1134 229 281 31 0 chr1 72061562 72061626 -125133806 - tRNA-Ala-GCY_ tRNA tRNA -6 69 4 1 1134 635 316 69 93 chr1 72061855 72062274 -125133158 + L1M4b LINE L1 23 431 -6903 1 1134 254 271 57 0 chr1 72062293 72062363 -125133069 + L1M4b LINE L1 519 592 -6742 1 1134 417 254 255 100 chr1 72062405 72062786 -125132646 + L1M4b LINE L1 706 1145 -6189 1 1134 23 54 0 0 chr1 72062922 72062959 -125132473 + AT_rich Low_complexity Low_complexity 1 37 0 1 1134 362 241 81 27 chr1 72062982 72063093 -125132339 + PB1D10 SINE Alu 1 117 0 1 1134 297 279 91 32 chr1 72063109 72063241 -125132191 + L1M4b LINE L1 3395 3534 -3472 1 1134 939 205 164 52 chr1 72063245 72063694 -125131738 + RLTR31_Mur LTR ERVK 1 499 -54 1 1134 261 253 127 0 chr1 72063712 72063791 -125131641 + L1M4b LINE L1 3516 3604 -3402 1 1134 340 263 66 0 chr1 72063845 72063982 -125131450 + L1M4b LINE L1 3872 4017 -2989 1 1134 24 0 0 0 chr1 72063990 72064014 -125131418 + AT_rich Low_complexity Low_complexity 1 24 0 1 1134 520 175 62 0 chr1 72064027 72064124 -125131308 + PB1D9 SINE Alu 1 103 -17 1 1134 22 0 0 0 chr1 72064151 72064173 -125131259 + AT_rich Low_complexity Low_complexity 1 22 0 1 1134 297 166 49 68 chr1 72064505 72064667 -125130765 + (GTGTG)n Simple_repeat Simple_repeat 1 159 0 1 1134 293 64 0 41 chr1 72066053 72066102 -125129330 - B1_Mur4 SINE Alu -2 148 102 1 1134 473 178 19 47 chr1 72066059 72066165 -125129267 - RLTR23 LTR ERV1 -318 112 10 1 1134 726 12 0 0 chr1 72066414 72066497 -125128935 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1134 216 310 98 20 chr1 72067414 72067516 -125127916 - PB1D10 SINE Alu -2 115 6 1 1134 230 364 7 34 chr1 72068096 72068244 -125127188 + L1MC5 LINE L1 5445 5588 -2294 1 1134 321 47 0 0 chr1 72068303 72068346 -125127086 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1134 221 159 105 9 chr1 72068380 72068494 -125126938 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 1 1134 21 89 0 0 chr1 72068749 72068805 -125126627 + AT_rich Low_complexity Low_complexity 1 56 0 1 1134 243 277 159 97 chr1 72068858 72069034 -125126398 + B4 SINE B4 106 292 0 1 1134 438 154 0 0 chr1 72069164 72069242 -125126190 + B1_Mur4 SINE Alu 65 142 -8 1 1134 180 0 0 0 chr1 72069980 72070000 -125125432 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1 1134 322 288 2 4 chr1 72070445 72070540 -125124892 + PB1D9 SINE Alu 3 97 -53 1 1134 273 279 29 0 chr1 72070525 72070593 -125124839 + ID4 SINE ID 17 86 -66 1 1134 534 291 118 20 chr1 72070920 72071359 -125124073 + L1MC5 LINE L1 7173 7654 -307 1 1134 1884 205 36 38 chr1 72071410 72071916 -125123516 - RLTR16 LTR ERVK 0 505 1 1 1134 2911 191 52 57 chr1 72071918 72072984 -125122448 - MYSERV16_I-int LTR ERVK -3 2839 1669 1 1134 873 163 0 45 chr1 72073129 72073283 -125122149 + B1_Mur4 SINE Alu 2 148 -2 1 1134 205 156 0 0 chr1 72076583 72076615 -125118817 + (CACCAT)n Simple_repeat Simple_repeat 2 33 0 1 1134 698 80 12 6 chr1 72077114 72077227 -125118205 - B1_Mus1 SINE Alu -9 111 1 1 1134 195 218 0 0 chr1 72077311 72077366 -125118066 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1134 252 341 90 8 chr1 72077803 72077936 -125117496 + LTR16A LTR ERVL 154 297 -154 1 1134 382 234 243 0 chr1 72078192 72078299 -125117133 - B3 SINE B2 -4 212 80 1 1134 516 72 0 0 chr1 72078320 72078389 -125117043 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1134 436 271 0 0 chr1 72078408 72078504 -125116928 - PB1 SINE Alu 0 127 32 1 1134 751 190 28 14 chr1 72079388 72079532 -125115900 + B1F2 SINE Alu 4 149 0 1 1134 474 187 25 11 chr1 72079547 72079658 -125115774 + PB1D9 SINE Alu 4 138 -10 1 1134 546 29 0 0 chr1 72079663 72079731 -125115701 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1 1134 513 0 0 0 chr1 72080155 72080212 -125115220 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1134 432 0 0 0 chr1 72080212 72080259 -125115173 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1134 321 224 0 0 chr1 72080311 72080369 -125115063 + tRNA-Ala-GCA tRNA tRNA 9 66 -9 1 1134 246 360 9 0 chr1 72080404 72080515 -125114917 - MER106B DNA MER1_type -920 139 28 1 1134 964 139 0 11 chr1 72080818 72080992 -125114440 + GA-rich Low_complexity Low_complexity 2 173 0 1 1134 288 77 0 0 chr1 72080992 72081031 -125114401 + (GGAGAA)n Simple_repeat Simple_repeat 4 42 0 1 1134 183 162 0 0 chr1 72081952 72081989 -125113443 + GA-rich Low_complexity Low_complexity 3 39 0 1 1134 22 0 0 0 chr1 72083657 72083679 -125111753 + AT_rich Low_complexity Low_complexity 1 22 0 1 1134 430 273 126 28 chr1 72083962 72084105 -125111327 + RSINE1 SINE B4 3 159 -6 1 1134 1327 166 62 94 chr1 72085253 72085593 -125109839 + ORR1B2 LTR MaLR 39 367 0 1 1134 231 297 136 19 chr1 72087760 72087863 -125107569 - PB1D10 SINE Alu 0 117 3 1 1134 1558 166 134 112 chr1 72088208 72088495 -125106937 - RLTR11A2 LTR ERVK 0 527 216 1 1134 906 60 0 0 chr1 72088495 72088612 -125106820 + (TCTCCC)n Simple_repeat Simple_repeat 3 119 0 1 1134 1558 166 134 112 chr1 72088612 72088840 -125106592 - RLTR11A2 LTR ERVK -312 215 1 1 1134 206 174 22 0 chr1 72089163 72089209 -125106223 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 141 1784 346 35 11 chr1 72089239 72090085 -125105347 + Lx8 LINE L1 6600 7466 -7 1 1135 1203 145 9 14 chr1 72090489 72090699 -125104733 - URR1B DNA MER1_type -15 210 2 1 1135 472 226 27 36 chr1 72090741 72090851 -125104581 + PB1D7 SINE Alu 12 120 0 1 1135 1370 185 344 28 chr1 72091954 72092411 -125103021 - MT2B LTR ERVL 0 601 1 1 1135 703 257 118 30 chr1 72092791 72093120 -125102312 + L2a LINE L2 2416 2773 -646 1 1135 527 187 125 109 chr1 72093419 72093458 -125101974 - B3A SINE B2 0 198 169 1 1135 1749 117 198 20 chr1 72093458 72093806 -125101626 + RMER17C LTR ERVK 1 410 0 1 1135 527 187 125 109 chr1 72093806 72093958 -125101474 - B3A SINE B2 -30 168 4 1 1135 308 289 41 0 chr1 72094021 72094118 -125101314 + L2a LINE L2 3326 3426 0 1 1135 296 310 77 66 chr1 72094946 72095129 -125100303 + MLT1K LTR MaLR 71 255 -340 1 1135 251 260 67 9 chr1 72095133 72095238 -125100194 + MIRb SINE MIR 9 119 -149 1 1135 342 327 65 37 chr1 72095406 72095622 -125099810 + MLT1K LTR MaLR 349 570 -25 1 1135 1016 78 7 21 chr1 72095788 72095931 -125099501 + B1_Mm SINE Alu 1 141 -6 1 1135 741 139 0 0 chr1 72095931 72096053 -125099379 + (GGA)n Simple_repeat Simple_repeat 2 123 0 1 1135 246 32 0 0 chr1 72096095 72096126 -125099306 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1135 219 36 0 0 chr1 72097127 72097155 -125098277 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1135 222 37 0 0 chr1 72097485 72097512 -125097920 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1135 315 0 0 0 chr1 72097516 72097551 -125097881 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1 1135 848 265 27 124 chr1 72097916 72098286 -125097146 - RMER15 LTR ERVL -4 571 238 1 1135 546 304 161 35 chr1 72098847 72099382 -125096050 - MER20B DNA MER1_type 0 783 182 1 1135 1113 276 82 29 chr1 72099774 72100154 -125095278 - MER70B LTR ERVL -100 478 79 1 1135 4696 58 0 0 chr1 72100409 72100981 -125094451 + L1_Mus1 LINE L1 5996 6567 0 1 1135 616 315 51 57 chr1 72101274 72101570 -125093862 - ORR1E LTR MaLR -65 294 1 1 1135 1620 216 73 6 chr1 72101752 72102106 -125093326 - ORR1C1 LTR MaLR 0 378 1 1 1135 1072 246 173 6 chr1 72102115 72102474 -125092958 + MTD LTR MaLR 1 419 0 1 1135 415 298 0 9 chr1 72102842 72102957 -125092475 - PB1D10 SINE Alu -1 116 3 1 1135 555 168 0 10 chr1 72102957 72103059 -125092373 + ORR1B1 LTR MaLR 1 101 -293 1 1135 225 94 0 0 chr1 72103505 72103537 -125091895 + (GGA)n Simple_repeat Simple_repeat 3 34 0 1 1135 370 341 30 12 chr1 72104916 72105079 -125090353 - MLT1A0 LTR MaLR -45 320 155 1 1135 769 239 11 17 chr1 72105079 72105258 -125090174 + ID_B1 SINE B4 1 178 -46 1 1135 262 226 20 176 chr1 72105299 72105401 -125090031 - MLT1A0 LTR MaLR -279 86 1 1 1135 1823 111 3 31 chr1 72106043 72106331 -125089101 + L1Md_F2 LINE L1 6284 6563 -19 1 1135 186 43 0 0 chr1 72106334 72106357 -125089075 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1135 360 0 0 0 chr1 72106620 72106660 -125088772 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1135 456 312 148 27 chr1 72107831 72108088 -125087344 + B4A SINE B4 2 289 -3 1 1135 483 18 0 0 chr1 72108091 72108147 -125087285 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1135 250 374 55 51 chr1 72108422 72108639 -125086793 - LTR16B1 LTR ERVL -249 231 14 1 1135 22 0 0 0 chr1 72109981 72110003 -125085429 + AT_rich Low_complexity Low_complexity 1 22 0 1 1135 348 182 24 61 chr1 72110006 72110088 -125085344 - ID SINE ID -142 82 4 1 1135 379 355 61 83 chr1 72110553 72110915 -125084517 - ORR1E LTR MaLR -5 354 1 1 1135 2517 189 62 9 chr1 72110992 72111521 -125083911 + Lx9 LINE L1 7076 7632 -12 1 1135 189 0 0 0 chr1 72111521 72111542 -125083890 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 1135 335 248 123 9 chr1 72111837 72111951 -125083481 + MER58A DNA MER1_type 26 152 -72 1 1135 1654 170 79 73 chr1 72111955 72112555 -125082877 - RLTR20B1 LTR ERVK 0 563 3 1 1135 313 271 25 69 chr1 72113092 72113223 -125082209 + MLT1G1 LTR MaLR 445 579 0 1 1135 189 194 0 0 chr1 72113253 72113284 -125082148 - MIRb SINE MIR -188 80 50 2 1135 426 300 82 6 chr1 72113497 72113668 -125081764 + Lx8 LINE L1 7256 7439 -34 2 1135 652 235 105 11 chr1 72113674 72113855 -125081577 + B3A SINE B2 1 198 0 2 1135 22 0 0 0 chr1 72113904 72113926 -125081506 + AT_rich Low_complexity Low_complexity 1 22 0 2 1135 943 211 48 88 chr1 72114815 72115284 -125080148 + MT2B LTR ERVL 2 545 -56 2 1135 261 0 0 0 chr1 72115289 72115318 -125080114 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1135 315 0 0 0 chr1 72115318 72115352 -125080080 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1135 1430 268 16 28 chr1 72115725 72116151 -125079281 + L1ME2 LINE L1 5456 5876 -288 2 1135 481 320 87 29 chr1 72116158 72116364 -125079068 + MER58A DNA MER1_type 7 224 0 2 1135 280 351 67 7 chr1 72116464 72116599 -125078833 - MLT2B2 LTR ERVL 0 554 412 2 1135 682 270 88 18 chr1 72116664 72116890 -125078542 - MLT2B2 LTR ERVL -273 242 1 2 1135 1056 159 169 0 chr1 72118535 72118724 -125076708 + URR1B DNA MER1_type 5 225 0 2 1135 318 97 94 0 chr1 72118866 72118929 -125076503 + B2_Mm2 SINE B2 46 118 -80 2 1135 536 0 16 0 chr1 72118960 72119024 -125076408 + (GAA)n Simple_repeat Simple_repeat 2 66 0 2 1135 664 249 78 56 chr1 72119083 72119351 -125076081 - MLT1D LTR MaLR 0 505 232 2 1135 368 212 127 42 chr1 72119526 72119644 -125075788 + RSINE1 SINE B4 35 162 -3 2 1135 676 221 131 23 chr1 72119690 72119866 -125075566 + B3A SINE B2 4 198 0 2 1135 2491 173 31 22 chr1 72120633 72121082 -125074350 + LSU-rRNA_Hsa rRNA rRNA 1616 2068 -2967 2 1135 586 228 9 9 chr1 72121118 72121233 -125074199 + LSU-rRNA_Hsa rRNA rRNA 2224 2338 -2697 2 1135 357 172 0 0 chr1 72121234 72121298 -125074134 + tRNA-Lys-AAG tRNA tRNA 13 76 0 2 1135 2851 150 13 30 chr1 72121300 72121824 -125073608 - RMER20A LTR ERVK 0 516 2 2 1135 1197 68 0 0 chr1 72121911 72122059 -125073373 + B1_Mus1 SINE Alu 1 148 0 2 1135 243 0 0 0 chr1 72123603 72123630 -125071802 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1135 297 0 0 0 chr1 72123630 72123662 -125071770 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1135 225 151 0 0 chr1 72123663 72123716 -125071716 + CT-rich Low_complexity Low_complexity 2 54 0 2 1135 852 107 11 11 chr1 72123723 72123903 -125071529 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1135 561 232 0 60 chr1 72123930 72124063 -125071369 - B1F SINE Alu -24 125 1 2 1135 455 256 215 23 chr1 72124494 72124743 -125070689 + MLT1F1 LTR MaLR 229 560 -9 2 1135 292 356 74 0 chr1 72125137 72125272 -125070160 + LTR33 LTR ERVL 46 190 -325 2 1135 265 318 21 28 chr1 72125487 72125650 -125069782 + MER102a DNA MER1_type 37 198 -132 2 1135 899 237 0 5 chr1 72126206 72126393 -125069039 + B4 SINE B4 8 193 -99 2 1135 302 337 62 29 chr1 72126420 72126628 -125068804 - L2a LINE L2 0 3426 3212 2 1135 400 346 88 26 chr1 72126961 72127267 -125068165 - LTR33C LTR ERVL -60 569 245 2 1135 1056 300 8 8 chr1 72127379 72127641 -125067791 + B4A SINE B4 6 267 -25 2 1135 333 0 0 0 chr1 72127642 72127679 -125067753 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1135 474 18 0 0 chr1 72127713 72127768 -125067664 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 1135 371 106 15 0 chr1 72127770 72127836 -125067596 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1135 360 0 0 0 chr1 72128603 72128643 -125066789 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1135 465 317 181 79 chr1 72129055 72129535 -125065897 + MLT1F2 LTR MaLR 5 533 -27 2 1135 346 262 84 25 chr1 72129539 72129658 -125065774 + MER34 LTR ERV1 1 114 -428 2 1135 686 138 0 0 chr1 72129708 72129824 -125065608 + URR1B DNA MER1_type 110 225 0 2 1135 266 293 51 51 chr1 72129982 72130061 -125065371 - ID4 SINE ID 0 83 5 2 1135 255 213 127 104 chr1 72130056 72130073 -125065359 + MER34 LTR ERV1 393 412 -159 2 1135 244 256 159 8 chr1 72130073 72130199 -125065233 - B1F1 SINE Alu -2 147 3 2 1135 255 213 127 104 chr1 72130199 72130354 -125065078 + MER34 LTR ERV1 413 569 -2 2 1135 180 0 0 0 chr1 72130395 72130415 -125065017 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1135 800 165 0 0 chr1 72130420 72130553 -125064879 + B1_Mus1 SINE Alu 3 135 -13 2 1135 1331 74 16 0 chr1 72130548 72130737 -125064695 - B2_Mm2 SINE B2 -2 193 2 2 1135 761 279 162 45 chr1 72132109 72132491 -125062941 - LTR16A LTR ERVL -20 431 5 2 1135 231 267 50 0 chr1 72132642 72132702 -125062730 - MLT1B LTR MaLR -3 387 325 2 1135 2533 251 58 28 chr1 72132714 72132936 -125062496 + Lx7 LINE L1 6618 6839 -857 2 1135 5563 68 3 4 chr1 72132936 72133658 -125061774 - L1_Mus4 LINE L1 -2 6634 5914 2 1135 2533 251 58 28 chr1 72133658 72134106 -125061326 + Lx7 LINE L1 6840 7308 -388 2 1135 218 32 0 31 chr1 72134133 72134165 -125061267 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 2 1135 266 106 0 21 chr1 72134199 72134247 -125061185 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 2 1135 234 128 0 0 chr1 72134285 72134324 -125061108 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1135 375 23 0 0 chr1 72135099 72135143 -125060289 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1135 249 326 145 68 chr1 72135727 72136284 -125059148 + LTR84a LTR ERVL 73 672 -85 2 1135 235 171 24 0 chr1 72137632 72137673 -125057759 + B1_Mus1 SINE Alu 1 42 -106 2 1135 458 37 0 0 chr1 72137698 72137752 -125057680 + (GGGAA)n Simple_repeat Simple_repeat 4 57 0 2 1135 742 160 30 0 chr1 72137752 72137921 -125057511 + GA-rich Low_complexity Low_complexity 4 177 0 2 1135 358 213 138 0 chr1 72138788 72138882 -125056550 + B3 SINE B2 59 165 -51 2 1135 2683 121 10 0 chr1 72139148 72139538 -125055894 + ORR1B1 LTR MaLR 1 394 0 2 1135 1100 108 0 0 chr1 72140725 72140873 -125054559 + B1_Mus1 SINE Alu 1 148 0 2 1135 584 97 19 19 chr1 72140886 72140991 -125054441 - ORR1B1 LTR MaLR -249 145 41 2 1135 205 271 0 33 chr1 72141588 72141649 -125053783 + L2c LINE L2 3021 3079 -308 2 1135 1257 79 16 82 chr1 72141712 72141906 -125053526 + B2_Mm2 SINE B2 1 181 -14 2 1135 279 0 0 0 chr1 72141960 72141991 -125053441 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1135 185 318 11 45 chr1 72142050 72142139 -125053293 + L2c LINE L2 3237 3322 -53 2 1135 240 149 0 0 chr1 72143007 72143054 -125052378 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1135 577 149 9 0 chr1 72143797 72143904 -125051528 + B1_Mus2 SINE Alu 40 147 0 2 1135 23 0 0 0 chr1 72143907 72143930 -125051502 + AT_rich Low_complexity Low_complexity 1 23 0 2 1135 457 212 103 26 chr1 72143973 72144089 -125051343 + B1_Mur1 SINE Alu 25 149 0 2 1135 267 302 46 13 chr1 72144154 72144305 -125051127 + RSINE1 SINE B4 8 163 -2 2 1135 340 192 28 82 chr1 72144719 72144901 -125050531 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 2 1135 213 121 0 0 chr1 72144904 72144937 -125050495 + (TATG)n Simple_repeat Simple_repeat 4 36 0 2 1135 2301 91 45 0 chr1 72144938 72145246 -125050186 + ORR1A2 LTR MaLR 5 326 -1 2 1135 477 0 0 0 chr1 72145248 72145301 -125050131 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1135 273 246 0 10 chr1 72145529 72145622 -125049810 + ID4_ SINE ID 19 109 -43 2 1135 1007 75 0 68 chr1 72145843 72146082 -125049350 + (TG)n Simple_repeat Simple_repeat 1 222 0 2 1135 21 82 0 0 chr1 72146930 72146979 -125048453 + AT_rich Low_complexity Low_complexity 1 49 0 2 1135 33 25 0 0 chr1 72147032 72147072 -125048360 + AT_rich Low_complexity Low_complexity 1 40 0 2 1135 274 265 41 124 chr1 72147072 72147266 -125048166 - L1MC5 LINE L1 -181 7780 7603 2 1135 234 254 0 0 chr1 72147333 72147388 -125048044 + B4A SINE B4 1 55 -237 2 1135 540 56 0 0 chr1 72147587 72147659 -125047773 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1135 678 200 15 0 chr1 72148266 72148401 -125047031 + B1_Mur3 SINE Alu 1 137 -12 2 1135 202 336 43 34 chr1 72148497 72148614 -125046818 + L2a LINE L2 3306 3423 -3 2 1135 435 83 0 0 chr1 72149134 72149194 -125046238 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1135 183 189 74 19 chr1 72149841 72149895 -125045537 - L3 LINE CR1 -364 4125 4069 2 1135 324 181 70 35 chr1 72151123 72151209 -125044223 + RLTR25B LTR ERVK 421 509 -519 2 1135 854 35 35 0 chr1 72151136 72151252 -125044180 + B1_Mus2 SINE Alu 28 147 0 2 1135 197 302 44 55 chr1 72152418 72152509 -125042923 + MIR SINE MIR 36 125 -137 2 1135 226 330 28 57 chr1 72152521 72152627 -125042805 + LTR87 LTR ERVL? 3 105 -519 2 1135 388 259 92 14 chr1 72152903 72153044 -125042388 + LTR87 LTR ERVL? 447 598 -26 2 1135 192 40 0 0 chr1 72153703 72153728 -125041704 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1135 401 284 111 35 chr1 72154427 72154653 -125040779 - MIR SINE MIR -5 257 15 2 1135 693 243 48 5 chr1 72155630 72155816 -125039616 + MER2 DNA MER2_type 30 223 -122 2 1135 789 262 22 5 chr1 72155817 72156001 -125039431 + B3A SINE B2 1 187 -11 2 1135 224 30 0 29 chr1 72157861 72157895 -125037537 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 1135 245 187 60 107 chr1 72158003 72158087 -125037345 - ORR1E LTR MaLR -22 357 278 2 1135 372 288 62 20 chr1 72158147 72158336 -125037096 - ORR1E LTR MaLR -172 202 1 2 1135 334 311 12 139 chr1 72158343 72158515 -125036917 - MTEa LTR MaLR -220 159 10 2 1135 319 300 89 24 chr1 72158852 72158975 -125036457 + MER34A LTR ERV1 23 153 -418 2 1135 237 325 24 49 chr1 72159555 72159678 -125035754 + L1MC LINE L1 5567 5686 -2196 2 1135 230 284 0 80 chr1 72159707 72159795 -125035637 - MER34A1 LTR ERV1 -490 97 17 2 1135 21 36 0 0 chr1 72159834 72159862 -125035570 + AT_rich Low_complexity Low_complexity 1 28 0 2 1135 465 19 0 0 chr1 72161963 72162017 -125033415 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2 1135 720 272 84 44 chr1 72162106 72162208 -125033224 + B4A SINE B4 3 103 -189 2 1135 1295 92 20 5 chr1 72162208 72162404 -125033028 + L1_Mus2 LINE L1 6368 6566 0 3 1135 720 272 84 44 chr1 72162404 72162574 -125032858 + B4A SINE B4 104 286 -6 2 1135 1329 88 11 0 chr1 72162629 72162810 -125032622 + B2_Mm1t SINE B2 1 183 -10 3 1135 347 126 10 17 chr1 72162820 72162887 -125032545 + B2_Mm2 SINE B2 47 116 -100 3 1135 823 221 5 37 chr1 72162905 72163093 -125032339 - Lx8 LINE L1 -743 6730 6549 3 1135 186 43 0 0 chr1 72163139 72163162 -125032270 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1135 722 267 90 119 chr1 72163221 72163448 -125031984 - MER57E1 LTR ERV1 -1 371 145 3 1135 6224 37 1 0 chr1 72163448 72164175 -125031257 + L1Md_A LINE L1 5855 6582 0 3 1135 722 267 90 119 chr1 72164175 72164325 -125031107 - MER57E1 LTR ERV1 -228 144 5 3 1135 345 169 0 15 chr1 72164354 72164420 -125031012 - PB1D9 SINE Alu -7 113 49 3 1135 246 234 59 67 chr1 72165117 72165236 -125030196 + LTR37A LTR ERV1 18 135 -291 3 1135 613 239 85 58 chr1 72165777 72166070 -125029362 + LTR37A LTR ERV1 124 424 -2 3 1135 745 222 60 10 chr1 72166086 72166286 -125029146 - B3 SINE B2 -6 210 1 3 1135 605 310 23 35 chr1 72166632 72166893 -125028539 + B4A SINE B4 25 282 -10 3 1135 914 154 7 7 chr1 72166967 72167117 -125028315 - B1_Mur4 SINE Alu 0 150 1 3 1135 829 209 91 5 chr1 72167132 72167329 -125028103 - B3 SINE B2 0 216 3 3 1135 224 135 0 55 chr1 72167340 72167395 -125028037 + T-rich Low_complexity Low_complexity 1 52 0 3 1135 296 49 0 90 chr1 72167401 72167468 -125027964 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 3 1135 378 0 0 0 chr1 72167767 72167809 -125027623 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 1135 1204 119 6 6 chr1 72169022 72169200 -125026232 + B2_Mm1t SINE B2 2 179 -14 3 1135 330 129 444 65 chr1 72169265 72169354 -125026078 + B2_Mm2 SINE B2 47 164 -31 3 1135 501 17 0 0 chr1 72169354 72169412 -125026020 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 3 1135 330 129 444 65 chr1 72169412 72169430 -125026002 + B2_Mm2 SINE B2 165 194 -1 3 1135 338 352 80 6 chr1 72169512 72169675 -125025757 + MER45A DNA Tip100 2 176 -2 3 1135 198 0 0 0 chr1 72169997 72170019 -125025413 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1135 398 283 57 24 chr1 72171077 72171200 -125024232 + PB1 SINE Alu 1 127 0 3 1135 289 303 146 0 chr1 72171405 72171494 -125023938 + B1F SINE Alu 48 149 0 3 1135 628 229 158 0 chr1 72171506 72171689 -125023743 + B3 SINE B2 3 214 -2 3 1135 536 207 45 0 chr1 72171692 72171803 -125023629 - B3 SINE B2 0 216 101 3 1135 1219 91 17 28 chr1 72171825 72172005 -125023427 + B2_Mm1t SINE B2 1 178 -15 3 1135 2382 97 3 6 chr1 72172132 72172465 -125022967 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1135 55702 26 14 21 chr1 72172467 72178984 -125016448 - IAPEz-int LTR ERVK -2 6479 6 3 1135 2371 100 3 6 chr1 72178984 72179317 -125016115 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1135 223 281 176 35 chr1 72179422 72179589 -125015843 - MIR SINE MIR -71 197 4 3 1135 1541 225 13 71 chr1 72179700 72179954 -125015478 - ORR1D2 LTR MaLR 0 370 139 3 1135 1373 95 11 0 chr1 72179954 72180144 -125015288 + B2_Mm1t SINE B2 2 193 0 3 1135 1541 225 13 71 chr1 72180144 72180282 -125015150 - ORR1D2 LTR MaLR -232 138 1 3 1135 1010 193 187 32 chr1 72180435 72180713 -125014719 - MTE2a LTR MaLR 0 379 59 3 1135 823 130 410 11 chr1 72180713 72180982 -125014450 - ORR1C2 LTR MaLR -7 377 1 3 1135 721 252 96 42 chr1 72181129 72181369 -125014063 + ORR1D2 LTR MaLR 1 253 -117 3 1135 1695 68 0 0 chr1 72181345 72181565 -125013867 - MTB LTR MaLR -180 220 1 3 1135 516 302 50 92 chr1 72181566 72181828 -125013604 + MLT1A0 LTR MaLR 115 365 0 3 1135 444 217 75 0 chr1 72181835 72181941 -125013491 + L1MB8 LINE L1 5749 5862 -316 3 1135 386 254 151 23 chr1 72181963 72182181 -125013251 + L1MB8 LINE L1 5928 6173 -5 3 1135 372 204 90 20 chr1 72182269 72182369 -125013063 + PB1D10 SINE Alu 11 117 0 3 1135 419 56 0 0 chr1 72183910 72183964 -125011468 + B3A SINE B2 3 56 -142 3 1135 752 242 78 39 chr1 72184573 72184779 -125010653 + B3 SINE B2 1 214 -2 3 1135 943 157 7 0 chr1 72185714 72185861 -125009571 + B1_Mur2 SINE Alu 2 149 0 3 1135 469 238 156 0 chr1 72185880 72186002 -125009430 + B1F SINE Alu 7 147 -2 3 1135 668 189 0 0 chr1 72186020 72186131 -125009301 + B1_Mus2 SINE Alu 1 111 -36 3 1135 855 201 28 44 chr1 72186126 72186308 -125009124 + B3A SINE B2 20 198 0 3 1135 4986 213 107 33 chr1 72186700 72187940 -125007492 + Lx9 LINE L1 6204 7534 -110 3 1135 335 147 0 35 chr1 72188015 72188131 -125007301 - B2_Mm2 SINE B2 -3 192 47 3 1135 1272 89 6 0 chr1 72188182 72188351 -125007081 - B2_Mm1t SINE B2 -22 171 2 3 1135 27 29 0 0 chr1 72188442 72188476 -125006956 + AT_rich Low_complexity Low_complexity 1 34 0 3 1135 245 273 0 29 chr1 72188495 72188563 -125006869 + A-rich Low_complexity Low_complexity 5 70 0 3 1135 21 0 0 0 chr1 72189005 72189026 -125006406 + AT_rich Low_complexity Low_complexity 1 21 0 3 1135 240 278 54 27 chr1 72189183 72189257 -125006175 - ID4_ SINE ID -5 78 3 3 1135 714 69 0 0 chr1 72189401 72189502 -125005930 + (CA)n Simple_repeat Simple_repeat 1 101 0 3 1135 506 274 71 7 chr1 72189889 72190043 -125005389 + RSINE1 SINE B4 1 164 -1 3 1135 871 191 0 0 chr1 72190077 72190224 -125005208 - B1_Mur2 SINE Alu -1 148 2 3 1135 294 29 0 0 chr1 72190435 72190470 -125004962 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 3 1135 528 156 0 0 chr1 72190621 72190730 -125004702 + (TG)n Simple_repeat Simple_repeat 1 109 0 3 1135 468 91 0 0 chr1 72190749 72190815 -125004617 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1135 2213 152 77 65 chr1 72191026 72191519 -125003913 + RLTR19 LTR ERVK 1 499 0 3 1135 1032 110 115 6 chr1 72191770 72191944 -125003488 + B2_Mm1a SINE B2 1 193 0 3 1135 1156 277 62 32 chr1 72192231 72192570 -125002862 + MTEa LTR MaLR 5 353 -26 3 1135 1258 125 81 9 chr1 72193054 72193264 -125002168 + URR1B DNA MER1_type 1 225 0 3 1135 397 335 112 24 chr1 72193637 72193931 -125001501 + L1M5 LINE L1 5308 5627 -497 3 1135 571 308 10 58 chr1 72194220 72194427 -125001005 - B3A SINE B2 -1 197 1 3 1135 2312 87 153 11 chr1 72194464 72194837 -125000595 + RLTR23 LTR ERV1 1 426 -4 3 1135 405 280 108 17 chr1 72195128 72195248 -125000184 + B1F1 SINE Alu 1 131 -18 3 1135 611 323 41 37 chr1 72195257 72195501 -124999931 + B4A SINE B4 1 245 -47 3 1135 237 259 0 0 chr1 72195511 72195565 -124999867 + B4A SINE B4 216 269 -23 3 1135 501 127 0 0 chr1 72195566 72195645 -124999787 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1135 533 308 110 48 chr1 72195687 72195997 -124999435 - LTR82B Low_complexity ERVL -7 823 495 3 1135 2023 249 31 11 chr1 72196252 72196730 -124998702 - RMER20A LTR ERVK -4 512 25 3 1135 298 138 16 79 chr1 72196744 72196807 -124998625 + B1_Mus2 SINE Alu 1 59 -88 3 1135 513 218 0 56 chr1 72196883 72196990 -124998442 + B1_Mus2 SINE Alu 42 142 -5 3 1135 1434 192 212 0 chr1 72197073 72197412 -124998020 - MTD LTR MaLR -8 411 1 3 1135 253 272 21 42 chr1 72197425 72197521 -124997911 - RMER20B LTR ERVK -38 589 496 3 1135 721 303 171 17 chr1 72197936 72198292 -124997140 - Lx8 LINE L1 -132 7341 6931 3 1135 342 333 76 13 chr1 72198292 72198450 -124996982 - LTR82B Low_complexity ERVL -649 181 14 3 1135 968 112 0 15 chr1 72198509 72198645 -124996787 - B1_Mus1 SINE Alu -13 135 2 3 1135 643 245 88 5 chr1 72198693 72198886 -124996546 + B3 SINE B2 5 213 -3 3 1135 1172 113 49 0 chr1 72199010 72199195 -124996237 + B2_Mm2 SINE B2 2 195 0 3 1135 7476 120 119 66 chr1 72199195 72199500 -124995932 + Lx5 LINE L1 5446 5794 -1256 3 1135 1174 62 7 0 chr1 72199500 72199646 -124995786 + B1_Mus1 SINE Alu 2 148 0 3 1135 7476 162 62 33 chr1 72199646 72200644 -124994788 + Lx5 LINE L1 5795 6811 -239 3 1135 345 100 0 0 chr1 72200644 72200694 -124994738 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 3 1135 7476 162 62 33 chr1 72200694 72200897 -124994535 + Lx5 LINE L1 6812 7039 -11 3 1135 2065 169 22 39 chr1 72200897 72201171 -124994261 + MTC LTR MaLR 70 348 -73 3 1135 1211 122 11 16 chr1 72201171 72201354 -124994078 + B2_Mm1t SINE B2 2 183 -10 3 1135 2065 169 22 39 chr1 72201354 72201437 -124993995 + MTC LTR MaLR 349 421 0 3 1135 1384 91 5 0 chr1 72201465 72201652 -124993780 - B2_Mm1a SINE B2 -4 189 2 3 1135 832 284 9 13 chr1 72201652 72201877 -124993555 + MT2A LTR ERVL 270 493 -40 3 1135 295 163 113 75 chr1 72201885 72201991 -124993441 + MLT2B5 LTR ERVL 438 547 -8 3 1135 2019 135 16 161 chr1 72202133 72202503 -124992929 + ORR1C1 LTR MaLR 1 309 -69 3 1135 1254 41 0 0 chr1 72202503 72202650 -124992782 - B1_Mus1 SINE Alu 0 148 2 3 1135 2019 135 16 161 chr1 72202650 72202721 -124992711 + ORR1C1 LTR MaLR 310 378 0 3 1135 246 278 268 13 chr1 72202746 72202899 -124992533 - LTR16A1 LTR ERVL 0 456 265 3 1135 2483 145 32 3 chr1 72202980 72203360 -124992072 - MTC LTR MaLR -8 413 23 3 1135 186 103 0 0 chr1 72203427 72203456 -124991976 + (G)n Simple_repeat Simple_repeat 1 29 0 3 1135 1129 148 113 5 chr1 72203708 72203912 -124991520 + URR1A DNA MER1_type 1 226 0 3 1135 702 256 64 64 chr1 72203922 72204110 -124991322 - B3A SINE B2 -7 188 1 3 1135 611 262 43 27 chr1 72204123 72204307 -124991125 + L1MC3 LINE L1 7426 7612 -173 3 1135 932 235 15 5 chr1 72204336 72204537 -124990895 + B3 SINE B2 1 203 -13 3 1135 890 78 0 82 chr1 72207806 72208002 -124987430 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1135 967 44 0 100 chr1 72208030 72208230 -124987202 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1135 202 83 20 59 chr1 72208242 72208293 -124987139 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1135 604 279 24 110 chr1 72208301 72208555 -124986877 - B4 SINE B4 -3 289 58 3 1135 242 106 21 0 chr1 72209195 72209242 -124986190 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1135 218 282 27 27 chr1 72211074 72211147 -124984285 + ID4_ SINE ID 2 74 -9 3 1135 461 329 85 31 chr1 72211084 72211301 -124984131 + B4A SINE B4 14 243 -49 3 1135 1105 68 7 7 chr1 72211301 72211448 -124983984 + B1_Mus2 SINE Alu 1 147 0 3 1135 1161 114 0 40 chr1 72211491 72211665 -124983767 + B2_Mm1t SINE B2 1 167 -26 3 1135 359 72 319 35 chr1 72211701 72211814 -124983618 + B2_Mm2 SINE B2 47 191 -4 4 1135 950 123 39 0 chr1 72212083 72212237 -124983195 + URR1A DNA MER1_type 67 226 0 4 1135 30 0 0 0 chr1 72212681 72212711 -124982721 + AT_rich Low_complexity Low_complexity 1 30 0 4 1135 877 216 40 30 chr1 72212811 72213011 -124982421 + B3 SINE B2 7 208 -8 4 1135 27 0 0 0 chr1 72213011 72213038 -124982394 + AT_rich Low_complexity Low_complexity 1 27 0 4 1135 242 222 57 80 chr1 72213375 72213463 -124981969 + B3A SINE B2 49 134 -64 4 1135 1009 206 32 11 chr1 72213679 72213865 -124981567 + B3 SINE B2 2 191 -25 4 1135 1096 45 8 0 chr1 72214930 72215064 -124980368 + B2_Mm2 SINE B2 1 135 -60 4 1135 1302 189 217 10 chr1 72215208 72215512 -124979920 + ORR1B2 LTR MaLR 1 367 0 4 1135 1076 216 5 9 chr1 72215557 72215767 -124979665 + B3 SINE B2 3 211 -5 4 1135 479 276 65 16 chr1 72215779 72215970 -124979462 - L1MA7 LINE L1 -141 6039 5832 4 1135 308 98 0 86 chr1 72215977 72216047 -124979385 - B2_Mm2 SINE B2 -107 109 47 4 1135 1270 91 11 0 chr1 72216090 72216266 -124979166 - B2_Mm1t SINE B2 -14 179 2 4 1135 243 210 0 101 chr1 72216266 72216335 -124979097 - L1MA7 LINE L1 -301 5888 5827 4 1135 282 29 0 0 chr1 72216335 72216370 -124979062 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1135 362 236 1 82 chr1 72216372 72216483 -124978949 - B1F SINE Alu -5 115 12 4 1135 222 267 41 72 chr1 72216507 72216604 -124978828 + L2b LINE L2 3049 3142 -233 4 1135 410 298 65 26 chr1 72216896 72217051 -124978381 + RSINE1 SINE B4 3 163 -2 4 1135 630 304 100 14 chr1 72218464 72218744 -124976688 + LTR31 LTR ERV1 264 567 -52 4 1135 677 143 8 43 chr1 72218748 72218865 -124976567 + B1_Mus1 SINE Alu 16 128 -20 4 1135 400 301 28 14 chr1 72218906 72219051 -124976381 + B1_Mur1 SINE Alu 3 149 0 4 1135 380 313 101 58 chr1 72219158 72219297 -124976135 + RSINE1 SINE B4 11 155 -10 4 1135 270 0 0 0 chr1 72219302 72219332 -124976100 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1135 34 24 0 0 chr1 72219347 72219388 -124976044 + AT_rich Low_complexity Low_complexity 1 41 0 4 1135 490 189 162 29 chr1 72219638 72219774 -124975658 + RMER15 LTR ERVL 422 575 0 4 1136 313 273 0 0 chr1 72220723 72220789 -124974643 - MER2B DNA MER2_type -46 290 225 4 1136 271 208 53 53 chr1 72221205 72221337 -124974095 - Lx7 LINE L1 0 7696 7565 4 1136 300 194 16 31 chr1 72221375 72221439 -124973993 + L1MEe LINE L1 753 815 -4039 4 1136 556 252 87 91 chr1 72221484 72221715 -124973717 - Lx7 LINE L1 -453 7243 7014 4 1136 328 250 61 24 chr1 72221762 72221844 -124973588 + RSINE1 SINE B4 8 92 -73 4 1136 23 68 0 0 chr1 72221878 72221922 -124973510 + AT_rich Low_complexity Low_complexity 1 44 0 4 1136 226 311 143 19 chr1 72222250 72222355 -124973077 - MER58A DNA MER1_type -68 156 39 4 1136 216 0 0 0 chr1 72222370 72222394 -124973038 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1136 24 53 0 0 chr1 72222395 72222433 -124972999 + AT_rich Low_complexity Low_complexity 1 38 0 4 1136 297 188 0 0 chr1 72222485 72222533 -124972899 - B3 SINE B2 -86 130 83 4 1136 261 0 0 0 chr1 72222533 72222562 -124972870 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1136 825 132 359 0 chr1 72223039 72223198 -124972234 + B3 SINE B2 1 216 0 4 1136 756 122 0 0 chr1 72223395 72223502 -124971930 - B1_Mur4 SINE Alu -43 107 1 4 1136 23 78 0 0 chr1 72223525 72223576 -124971856 + AT_rich Low_complexity Low_complexity 1 51 0 4 1136 457 274 43 17 chr1 72223603 72223718 -124971714 - B3A SINE B2 -80 118 1 4 1136 595 314 44 77 chr1 72223719 72223818 -124971614 - LTR40b LTR ERVL -149 313 219 4 1136 1144 155 96 10 chr1 72223818 72224026 -124971406 + URR1A DNA MER1_type 1 226 0 4 1136 595 314 44 77 chr1 72224026 72224199 -124971233 - LTR40b LTR ERVL -244 218 50 4 1136 192 246 152 15 chr1 72224533 72224599 -124970833 + L2a LINE L2 3286 3360 -66 4 1136 647 264 140 88 chr1 72224644 72225009 -124970423 + MLT1B LTR MaLR 4 387 -3 4 1136 236 362 50 44 chr1 72225286 72225445 -124969987 + MLT1A1 LTR MaLR 1 160 -248 4 1136 1019 247 68 108 chr1 72225446 72225827 -124969605 - ORR1D2 LTR MaLR 0 370 5 4 1136 455 229 98 0 chr1 72226282 72226404 -124969028 + B3A SINE B2 1 134 -64 4 1136 272 304 58 19 chr1 72227114 72227218 -124968214 + Lx8 LINE L1 6944 7051 -422 4 1136 522 0 0 0 chr1 72227218 72227276 -124968156 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 4 1136 868 76 8 16 chr1 72227276 72227397 -124968035 - B1_Mus1 SINE Alu -9 139 20 4 1136 231 309 37 0 chr1 72227421 72227502 -124967930 + Lx8 LINE L1 7074 7157 -316 4 1136 27 29 0 0 chr1 72227755 72227789 -124967643 + AT_rich Low_complexity Low_complexity 1 34 0 4 1136 523 280 43 43 chr1 72227808 72227972 -124967460 + RSINE1 SINE B4 2 165 0 4 1136 983 100 0 11 chr1 72228402 72228584 -124966848 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1136 585 80 0 0 chr1 72228599 72228687 -124966745 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1136 274 197 27 40 chr1 72230414 72230488 -124964944 + ID2 SINE ID 5 77 -6 4 1136 595 270 84 35 chr1 72230496 72230699 -124964733 - B4A SINE B4 -79 213 1 4 1136 300 188 78 0 chr1 72230699 72230761 -124964671 - MLT2B4 LTR ERVL -483 73 7 4 1136 335 279 83 23 chr1 72231219 72231345 -124964087 + B1F SINE Alu 10 143 -6 4 1136 513 0 0 0 chr1 72231345 72231402 -124964030 + (TAAAA)n Simple_repeat Simple_repeat 2 58 0 4 1136 368 284 22 43 chr1 72231413 72231505 -124963927 + RSINE1 SINE B4 3 92 -200 4 1136 232 269 12 37 chr1 72231586 72231658 -124963774 + B4 SINE B4 24 93 -199 4 1136 314 154 148 2 chr1 72231658 72231737 -124963695 + RSINE1 SINE B4 2 90 -202 4 1136 224 302 0 45 chr1 72231772 72231838 -124963594 + ID_B1 SINE B4 77 139 -85 4 1136 720 254 127 0 chr1 72231918 72232099 -124963333 + B4 SINE B4 85 288 -4 4 1136 393 123 0 0 chr1 72232181 72232246 -124963186 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 4 1136 535 292 97 19 chr1 72233860 72234066 -124961366 + Helitron1Nb_Mam RC Helitron 16 237 -879 4 1136 248 320 13 0 chr1 72234152 72234227 -124961205 + ID2 SINE ID 5 80 -3 4 1136 257 295 16 0 chr1 72234499 72234560 -124960872 + MIR SINE MIR 46 107 -155 4 1136 510 224 112 68 chr1 72235585 72235791 -124959641 + Charlie8 DNA MER1_type 28 242 -2186 4 1136 1152 174 42 24 chr1 72235930 72236142 -124959290 - B3 SINE B2 0 216 1 4 1136 243 234 122 41 chr1 72236229 72236327 -124959105 + L1M5 LINE L1 5704 5809 -431 4 1136 1211 169 4 56 chr1 72236828 72237060 -124958372 - URR1B DNA MER1_type -1 224 5 4 1136 1380 43 59 16 chr1 72237458 72237645 -124957787 + B2_Mm2 SINE B2 1 195 0 4 1136 216 294 33 66 chr1 72237985 72238030 -124957402 - RSINE1 SINE B4 0 165 125 4 1136 360 0 0 0 chr1 72238030 72238070 -124957362 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1136 548 273 113 70 chr1 72238070 72238326 -124957106 - B4 SINE B4 -23 269 3 4 1136 909 226 73 30 chr1 72238326 72238550 -124956882 - B4A SINE B4 -58 234 1 4 1136 1190 101 6 0 chr1 72238995 72239154 -124956278 + B2_Mm1a SINE B2 1 160 -33 4 1136 666 0 0 0 chr1 72239154 72239228 -124956204 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 4 1136 1013 158 62 6 chr1 72239294 72239472 -124955960 + B3 SINE B2 1 188 -28 4 1136 396 40 0 0 chr1 72239472 72239522 -124955910 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 4 1136 474 265 15 45 chr1 72239532 72239685 -124955747 - B3 SINE B2 -17 178 36 4 1136 779 171 219 0 chr1 72239804 72239968 -124955464 + B3 SINE B2 3 202 -14 4 1136 754 196 80 0 chr1 72239981 72240119 -124955313 + B1_Mur3 SINE Alu 1 149 0 4 1136 642 276 57 57 chr1 72240142 72240388 -124955044 + B4A SINE B4 33 278 -14 4 1136 234 0 0 0 chr1 72240447 72240473 -124954959 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 4 1136 237 33 0 0 chr1 72241159 72241189 -124954243 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1136 1183 62 7 0 chr1 72241201 72241347 -124954085 - B1_Mus1 SINE Alu 0 148 2 4 1136 22 0 0 0 chr1 72241350 72241372 -124954060 + AT_rich Low_complexity Low_complexity 1 22 0 4 1136 884 110 0 8 chr1 72242217 72242345 -124953087 + B1_Mur4 SINE Alu 23 149 -1 4 1136 849 114 37 22 chr1 72242958 72243093 -124952339 - ORR1C2 LTR MaLR 0 384 248 4 1136 333 0 0 0 chr1 72243887 72243924 -124951508 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1136 254 250 0 111 chr1 72243986 72243998 -124951434 + B4 SINE B4 77 156 -136 4 1136 343 127 13 90 chr1 72243998 72244076 -124951356 + B1_Mur4 SINE Alu 1 72 -77 4 1136 202 114 0 28 chr1 72244264 72244300 -124951132 + (CACCC)n Simple_repeat Simple_repeat 5 39 0 4 1136 518 254 25 8 chr1 72244501 72244620 -124950812 + B4 SINE B4 166 286 -6 4 1136 216 283 10 52 chr1 72245633 72245730 -124949702 + CT-rich Low_complexity Low_complexity 2 94 0 4 1136 705 235 7 0 chr1 72245801 72245937 -124949495 + B1_Mur2 SINE Alu 1 137 -12 4 1136 1213 195 0 0 chr1 72246557 72246767 -124948665 - B3 SINE B2 -1 215 6 4 1136 220 313 0 56 chr1 72246777 72246848 -124948584 + L2a LINE L2 2772 2838 -581 4 1136 323 315 137 59 chr1 72246841 72247023 -124948409 + L2a LINE L2 3040 3259 -167 4 1136 1228 55 0 0 chr1 72247023 72247169 -124948263 - B1_Mm SINE Alu 0 147 2 4 1136 323 315 137 59 chr1 72247169 72247344 -124948088 + L2a LINE L2 3260 3424 -2 4 1136 335 338 112 39 chr1 72247493 72247699 -124947733 - L2a LINE L2 -171 3255 3035 4 1136 242 43 22 0 chr1 72248014 72248060 -124947372 + L1Md_F2 LINE L1 6536 6582 0 4 1136 610 237 46 0 chr1 72248213 72248344 -124947088 + B1_Mur2 SINE Alu 1 137 -12 4 1136 279 0 0 0 chr1 72248344 72248375 -124947057 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 1136 576 0 0 0 chr1 72248375 72248438 -124946994 + (GAGAA)n Simple_repeat Simple_repeat 2 65 0 5 1136 873 254 10 0 chr1 72248957 72249154 -124946278 + B3 SINE B2 2 200 -16 5 1136 589 231 16 8 chr1 72249160 72249282 -124946150 + B1F1 SINE Alu 5 127 -22 5 1136 239 244 42 0 chr1 72249977 72250046 -124945386 + MIR SINE MIR 82 166 -110 5 1136 398 303 24 39 chr1 72250050 72250177 -124945255 - MER82 DNA MER2_type -3 650 526 5 1136 1206 54 7 0 chr1 72250263 72250410 -124945022 - B1_Mus1 SINE Alu 0 148 1 5 1136 288 233 0 0 chr1 72251687 72251760 -124943672 + GA-rich Low_complexity Low_complexity 2 74 0 5 1136 404 275 57 24 chr1 72251793 72251916 -124943516 - B4 SINE B4 -165 127 1 5 1136 347 255 10 60 chr1 72251956 72252036 -124943396 - ID_B1 SINE B4 0 224 145 5 1136 387 0 0 0 chr1 72252036 72252079 -124943353 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1136 347 255 10 60 chr1 72252079 72252098 -124943334 - ID_B1 SINE B4 -80 144 130 5 1136 638 235 8 0 chr1 72252080 72252199 -124943233 - B1_Mur1 SINE Alu -24 125 6 5 1136 788 209 155 0 chr1 72252309 72252496 -124942936 - B3 SINE B2 0 216 1 5 1136 34 19 0 36 chr1 72252817 72252842 -124942590 + AT_rich Low_complexity Low_complexity 1 25 0 5 1136 881 69 145 8 chr1 72252842 72252973 -124942459 + B1_Mur4 SINE Alu 1 149 -1 5 1136 34 19 0 36 chr1 72252973 72253003 -124942429 + AT_rich Low_complexity Low_complexity 1 29 0 5 1136 677 208 129 57 chr1 72253341 72253550 -124941882 + B4A SINE B4 1 224 -68 5 1136 431 18 0 18 chr1 72253598 72253655 -124941777 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1136 535 250 113 51 chr1 72254038 72254312 -124941120 - B4A SINE B4 0 292 2 5 1136 237 65 0 0 chr1 72254486 72254517 -124940915 + (CAA)n Simple_repeat Simple_repeat 2 32 0 5 1136 1043 44 73 0 chr1 72254598 72254734 -124940698 + B1_Mus1 SINE Alu 2 147 -1 5 1136 1179 258 56 31 chr1 72254876 72255289 -124940143 + L1MB7 LINE L1 5618 6040 -144 5 1136 676 226 0 49 chr1 72255347 72255491 -124939941 + RSINE1 SINE B4 5 141 -24 5 1136 216 265 26 113 chr1 72255487 72255602 -124939830 + B3A SINE B2 9 113 -85 5 1136 257 348 76 41 chr1 72255491 72255518 -124939914 + B3 SINE B2 4 180 -36 5 1136 460 301 102 23 chr1 72255531 72255708 -124939724 + B4A SINE B4 53 243 -49 5 1136 207 0 0 0 chr1 72255752 72255775 -124939657 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1136 320 328 24 78 chr1 72256063 72256240 -124939192 - MIRb SINE MIR 0 262 95 5 1136 207 0 0 0 chr1 72256327 72256350 -124939082 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1136 754 124 127 37 chr1 72256357 72256491 -124938941 - B1_Mur3 SINE Alu 0 149 4 5 1136 1390 55 55 0 chr1 72256509 72256691 -124938741 - B2_Mm2 SINE B2 -3 192 1 5 1136 275 296 34 92 chr1 72256712 72256831 -124938601 - PB1D10 SINE Alu -5 112 1 5 1136 237 169 0 0 chr1 72256956 72257015 -124938417 + A-rich Low_complexity Low_complexity 1 59 0 5 1136 241 308 57 19 chr1 72257186 72257202 -124938230 + ID SINE ID 67 86 -138 5 1136 459 163 87 0 chr1 72257202 72257294 -124938138 + PB1D9 SINE Alu 1 100 -20 5 1136 585 28 0 0 chr1 72257297 72257368 -124938064 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1136 200 271 10 50 chr1 72258686 72258787 -124936645 + G-rich Low_complexity Low_complexity 2 98 0 5 1136 221 185 19 0 chr1 72259293 72259347 -124936085 + T-rich Low_complexity Low_complexity 2 56 0 5 1136 1328 81 27 16 chr1 72259679 72259867 -124935565 - B2_Mm2 SINE B2 -4 191 2 5 1136 2078 60 106 5 chr1 72259941 72260245 -124935187 + ORR1A2 LTR MaLR 23 370 -8 5 1136 296 192 154 0 chr1 72260288 72260366 -124935066 - L2a LINE L2 -4 3422 3333 5 1136 866 224 19 4 chr1 72260582 72260753 -124934679 - ID_B1 SINE B4 -54 238 66 5 1136 362 248 150 16 chr1 72260979 72261106 -124934326 - RSINE1 SINE B4 -21 144 1 5 1136 500 210 60 0 chr1 72261816 72261916 -124933516 + RSINE1 SINE B4 3 108 -57 5 1136 351 78 0 0 chr1 72261933 72261984 -124933448 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1136 549 276 57 11 chr1 72262003 72262179 -124933253 + B3A SINE B2 4 187 -11 5 1136 657 36 0 0 chr1 72262201 72262285 -124933147 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1136 507 117 0 0 chr1 72262285 72262362 -124933070 - B1_Mur4 SINE Alu -10 140 64 5 1136 616 231 23 8 chr1 72262364 72262495 -124932937 + B1_Mur2 SINE Alu 10 142 -7 5 1136 31 0 0 24 chr1 72262500 72262519 -124932913 + AT_rich Low_complexity Low_complexity 1 19 0 5 1136 647 233 88 21 chr1 72262519 72262712 -124932720 + B3 SINE B2 1 206 -10 5 1136 31 0 0 24 chr1 72262712 72262734 -124932698 + AT_rich Low_complexity Low_complexity 1 22 0 5 1136 1246 99 32 27 chr1 72262735 72262922 -124932510 + B2_Mm2 SINE B2 1 188 -7 5 1136 1252 27 0 13 chr1 72263129 72263278 -124932154 - B1_Mus1 SINE Alu 0 148 2 5 1136 990 243 41 19 chr1 72263332 72263600 -124931832 - RLTR16 LTR ERVK -231 274 1 5 1136 1141 55 7 7 chr1 72264624 72264771 -124930661 + B1_Mm SINE Alu 1 147 0 5 1136 255 31 0 0 chr1 72266169 72266201 -124929231 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 5 1136 629 215 16 0 chr1 72266390 72266511 -124928921 + B1_Mur1 SINE Alu 27 149 0 5 1136 1006 113 0 0 chr1 72267028 72267170 -124928262 - B1_Mus1 SINE Alu -1 147 6 5 1136 28 29 0 0 chr1 72267170 72267205 -124928227 + AT_rich Low_complexity Low_complexity 1 35 0 5 1136 375 250 54 157 chr1 72267334 72267368 -124928064 + MT2B LTR ERVL 130 196 -405 5 1136 722 228 0 68 chr1 72267368 72267403 -124928029 + B1_Mur1 SINE Alu 1 31 -118 5 1136 917 305 80 62 chr1 72267403 72267889 -124927543 + RLTR19 LTR ERVK 5 499 0 5 1136 375 250 54 157 chr1 72267889 72267985 -124927447 + MT2B LTR ERVL 197 278 -323 5 1136 722 228 0 68 chr1 72267985 72267999 -124927433 + B1_Mur1 SINE Alu 32 136 -13 5 1136 998 63 0 0 chr1 72268002 72268129 -124927303 + B1_Mm SINE Alu 21 147 0 5 1136 226 273 10 120 chr1 72268730 72268830 -124926602 + MT2B2 LTR ERVL 153 241 -343 5 1136 368 282 0 0 chr1 72268752 72268830 -124926602 + PB1D10 SINE Alu 6 83 -34 5 1136 221 391 0 0 chr1 72268830 72268862 -124926570 + ID_B1 SINE B4 87 196 -28 5 1136 1433 84 21 0 chr1 72268989 72269179 -124926253 - B2_Mm2 SINE B2 0 195 2 5 1136 1242 128 16 0 chr1 72269346 72269534 -124925898 + B2_Mm1t SINE B2 2 192 -1 5 1136 636 246 30 0 chr1 72269765 72269899 -124925533 - B1_Mur2 SINE Alu -11 138 1 5 1136 207 0 0 0 chr1 72271523 72271546 -124923886 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1136 1199 106 0 6 chr1 72271548 72271719 -124923713 - B2_Mm2 SINE B2 -24 171 2 5 1136 258 224 0 0 chr1 72271782 72271867 -124923565 + GA-rich Low_complexity Low_complexity 2 86 0 5 1136 491 129 22 56 chr1 72271869 72271959 -124923473 + B1F2 SINE Alu 40 126 -23 5 1136 1628 37 0 0 chr1 72272813 72273000 -124922432 + U2 snRNA snRNA 1 187 -1 5 1136 643 155 79 15 chr1 72273095 72273220 -124922212 + B1_Mus1 SINE Alu 17 147 -1 5 1136 866 159 65 21 chr1 72273632 72273818 -124921614 - B2_Mm2 SINE B2 -1 194 1 5 1136 211 288 0 192 chr1 72273862 72273961 -124921471 + B3 SINE B2 23 102 -114 5 1136 550 14 0 0 chr1 72274036 72274107 -124921325 + L1Md_F3 LINE L1 6499 6569 -15 5 1136 204 97 0 0 chr1 72274120 72274151 -124921281 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1136 514 234 0 51 chr1 72274490 72274607 -124920825 + B1_Mur1 SINE Alu 27 137 -12 5 1136 252 0 0 0 chr1 72275079 72275107 -124920325 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1136 378 0 0 0 chr1 72275107 72275148 -124920284 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1136 40 21 0 0 chr1 72275475 72275522 -124919910 + AT_rich Low_complexity Low_complexity 1 47 0 5 1136 525 265 34 8 chr1 72275982 72276100 -124919332 - MTE2a LTR MaLR -190 189 69 5 1136 335 145 116 0 chr1 72276109 72276178 -124919254 - RMER15 LTR ERVL -7 568 492 5 1136 2368 158 20 38 chr1 72276205 72276651 -124918781 - RLTR1D LTR ERV1 -16 589 152 5 1136 287 233 129 32 chr1 72276633 72276726 -124918706 - RMER15 LTR ERVL -92 483 382 5 1136 1079 101 0 0 chr1 72277235 72277373 -124918059 + B1_Mus1 SINE Alu 1 138 -10 5 1136 879 150 13 197 chr1 72278301 72278340 -124917092 - B2_Mm2 SINE B2 -5 190 151 5 1136 3431 30 2 2 chr1 72278340 72278735 -124916697 + MTA_Mm LTR MaLR 2 396 0 5 1136 879 150 13 197 chr1 72278735 72278886 -124916546 - B2_Mm2 SINE B2 -45 150 42 5 1136 1041 73 107 73 chr1 72278886 72279025 -124916407 - B2_Mm1a SINE B2 -8 185 37 5 1136 203 0 0 36 chr1 72279031 72279059 -124916373 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1136 1243 14 0 14 chr1 72279059 72279196 -124916236 - B1_Mm SINE Alu -10 137 1 5 1136 1041 73 107 73 chr1 72279196 72279234 -124916198 - B2_Mm1a SINE B2 -157 36 2 5 1136 879 150 13 197 chr1 72279234 72279275 -124916157 - B2_Mm2 SINE B2 -154 41 1 5 1136 21 0 0 0 chr1 72279285 72279306 -124916126 + AT_rich Low_complexity Low_complexity 1 21 0 5 1136 229 316 12 12 chr1 72279313 72279393 -124916039 - B3A SINE B2 -3 195 116 5 1136 375 23 0 0 chr1 72279398 72279442 -124915990 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1136 752 74 205 0 chr1 72279443 72279565 -124915867 - B1_Mus1 SINE Alu 0 148 2 5 1136 352 276 34 124 chr1 72279592 72279770 -124915662 - RSINE1 SINE B4 0 165 4 5 1136 207 275 0 0 chr1 72280031 72280173 -124915259 + GA-rich Low_complexity Low_complexity 2 143 0 5 1136 302 179 0 87 chr1 72280187 72280279 -124915153 + (CAGAGA)n Simple_repeat Simple_repeat 2 85 0 5 1136 321 259 0 0 chr1 72280279 72280453 -124914979 + GA-rich Low_complexity Low_complexity 2 175 0 6 1136 189 279 0 0 chr1 72280483 72280623 -124914809 + GA-rich Low_complexity Low_complexity 2 141 0 6 1136 318 261 0 0 chr1 72280637 72280813 -124914619 + GA-rich Low_complexity Low_complexity 2 177 0 6 1136 652 230 23 0 chr1 72280814 72280988 -124914444 + (CAGG)n Simple_repeat Simple_repeat 1 178 0 6 1136 297 168 155 43 chr1 72280988 72281071 -124914361 + B1_Mus2 SINE Alu 40 112 -8 6 1136 608 159 70 9 chr1 72282262 72282376 -124913056 + B1_Mur3 SINE Alu 29 149 0 6 1136 522 205 76 38 chr1 72282523 72282655 -124912777 - B2_Mm2 SINE B2 -14 181 45 6 1136 270 230 112 22 chr1 72282674 72282763 -124912669 - B2_Mm2 SINE B2 -95 100 4 6 1136 1679 21 0 0 chr1 72283519 72283706 -124911726 + U2 snRNA snRNA 1 187 -1 6 1136 198 0 0 0 chr1 72283970 72283992 -124911440 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1136 222 37 0 0 chr1 72284376 72284403 -124911029 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1136 1014 131 32 120 chr1 72285361 72285438 -124909994 + RLTR24 LTR ERV1 1 71 -458 6 1136 1137 76 14 0 chr1 72285438 72285583 -124909849 - B1_Mus2 SINE Alu 0 147 1 6 1136 1014 131 32 120 chr1 72285583 72285722 -124909710 + RLTR24 LTR ERV1 72 198 -331 6 1136 1371 53 0 0 chr1 72285722 72285891 -124909541 + B2_Mm2 SINE B2 1 169 -26 6 1136 1587 52 0 0 chr1 72285897 72286088 -124909344 + B2_Mm1a SINE B2 1 191 -2 6 1136 224 30 0 29 chr1 72286101 72286135 -124909297 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1136 605 143 20 0 chr1 72286160 72286258 -124909174 - B2_Mm2 SINE B2 -94 101 2 6 1136 1310 172 88 39 chr1 72286272 72286580 -124908852 + RLTR24 LTR ERV1 205 527 -2 6 1136 1119 87 9 5 chr1 72286640 72286860 -124908572 + (TG)n Simple_repeat Simple_repeat 1 221 0 6 1136 1005 281 22 49 chr1 72286911 72287276 -124908156 - RLTR18B LTR ERVK -25 591 143 6 1136 335 345 32 83 chr1 72287251 72287380 -124908052 - RLTR18B LTR ERVK -302 314 195 6 1136 4538 62 7 32 chr1 72287380 72287982 -124907450 - LTRIS_Mus LTR ERV1 0 587 1 6 1136 335 306 143 143 chr1 72287982 72288143 -124907289 - RLTR18B LTR ERVK -422 194 15 6 1136 203 95 48 0 chr1 72288297 72288339 -124907093 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 6 1136 1127 76 7 0 chr1 72288339 72288484 -124906948 - B1_Mm SINE Alu 0 147 2 6 1136 310 114 313 17 chr1 72288532 72288647 -124906785 - B2_Mm2 SINE B2 0 195 47 6 1136 269 83 0 0 chr1 72288894 72288930 -124906502 + B1_Mus2 SINE Alu 1 36 -111 6 1136 1746 163 68 75 chr1 72288959 72289025 -124906407 - ORR1C2 LTR MaLR -2 382 337 6 1136 1064 64 42 14 chr1 72289025 72289168 -124906264 - B1_Mus1 SINE Alu 0 148 2 6 1136 1746 163 68 75 chr1 72289168 72289485 -124905947 - ORR1C2 LTR MaLR -48 336 2 6 1136 1659 22 0 0 chr1 72290786 72290971 -124904461 + U2 snRNA snRNA 1 185 -3 6 1136 278 205 0 57 chr1 72291062 72291150 -124904282 - B1_Mus2 SINE Alu -21 126 44 6 1136 1145 70 12 19 chr1 72291737 72291898 -124903534 - B2_Mm2 SINE B2 -6 189 30 6 1136 1594 32 27 0 chr1 72291898 72292086 -124903346 - B2_Mm1a SINE B2 0 193 1 6 1136 363 149 164 0 chr1 72292405 72292472 -124902960 + B3 SINE B2 134 211 -5 6 1136 1043 293 88 18 chr1 72292478 72292877 -124902555 - Lx6 LINE L1 -27 7433 7007 6 1136 1621 266 93 12 chr1 72292888 72293177 -124902255 - Lx6 LINE L1 -667 6391 6026 6 1136 2615 43 63 24 chr1 72293177 72293510 -124901922 - ORR1A1 LTR MaLR 0 346 1 6 1136 1621 255 74 13 chr1 72293510 72293749 -124901683 - Lx6 LINE L1 -1435 6025 5785 6 1136 404 53 39 13 chr1 72293763 72293817 -124901615 + (TTTTG)n Simple_repeat Simple_repeat 4 59 0 6 1136 1322 7 0 0 chr1 72293817 72293963 -124901469 - B1_Mus2 SINE Alu 0 147 2 6 1136 404 53 39 13 chr1 72293963 72293985 -124901447 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 1136 313 47 0 0 chr1 72293999 72294042 -124901390 - B1_Mus2 SINE Alu 0 147 105 6 1136 1613 53 0 0 chr1 72294049 72294239 -124901193 - B2_Mm1t SINE B2 -2 191 2 6 1136 743 145 0 24 chr1 72294240 72294367 -124901065 - Lx6 LINE L1 -87 5790 5667 6 1136 4078 115 33 21 chr1 72294372 72295030 -124900402 + MMETn-int LTR ERVK 4179 4844 0 6 1136 1937 117 18 54 chr1 72295030 72295364 -124900068 + RLTRETN_Mm LTR ERVK 1 322 0 6 1136 4349 175 141 165 chr1 72295364 72295588 -124899844 - Lx6 LINE L1 -205 5672 5316 6 1136 1081 71 43 0 chr1 72295588 72295729 -124899703 - B1_Mus2 SINE Alu 0 147 1 6 1136 4349 175 141 165 chr1 72295729 72296106 -124899326 - Lx6 LINE L1 -562 5315 4954 6 1136 1139 101 0 0 chr1 72296106 72296254 -124899178 - B1_Mus1 SINE Alu 0 148 1 6 1136 4349 175 141 165 chr1 72296254 72296520 -124898912 - Lx6 LINE L1 -924 4953 4740 6 1136 1082 71 0 0 chr1 72296520 72296660 -124898772 - B1_Mus1 SINE Alu -7 141 2 6 1136 4349 175 141 165 chr1 72296660 72296838 -124898594 - Lx6 LINE L1 -1138 4739 4563 6 1136 527 173 18 35 chr1 72296838 72296952 -124898480 - B2_Mm2 SINE B2 -6 189 78 6 1136 4349 175 141 165 chr1 72296952 72297585 -124897847 - Lx6 LINE L1 -1138 4562 3931 6 1136 1296 63 74 0 chr1 72297585 72297760 -124897672 - B2_Mm1t SINE B2 -4 189 2 6 1136 4349 175 141 165 chr1 72297760 72297821 -124897611 - Lx6 LINE L1 -1947 3930 3862 6 1136 290 132 19 0 chr1 72297821 72297874 -124897558 + B3 SINE B2 158 211 -5 6 1136 1938 167 22 81 chr1 72298272 72298681 -124896751 - ORR1B1 LTR MaLR 0 394 10 6 1136 1282 77 65 0 chr1 72298995 72299165 -124896267 + B2_Mm2 SINE B2 1 181 -14 6 1136 315 109 0 0 chr1 72299165 72299211 -124896221 + B2_Mm2 SINE B2 51 96 -99 6 1136 23 33 0 0 chr1 72299228 72299258 -124896174 + AT_rich Low_complexity Low_complexity 1 30 0 6 1136 1547 43 21 0 chr1 72299258 72299444 -124895988 + B2_Mm1t SINE B2 4 193 0 6 1136 499 200 37 15 chr1 72299545 72299660 -124895772 + B1_Mur3 SINE Alu 1 147 -2 6 1136 234 0 0 0 chr1 72299738 72299764 -124895668 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1136 1048 73 15 0 chr1 72299764 72299901 -124895531 - B1_Mus1 SINE Alu -8 140 2 6 1136 551 236 36 127 chr1 72299901 72299929 -124895503 - B4 SINE B4 -74 218 69 6 1136 2056 99 63 0 chr1 72300013 72300315 -124895117 - L1_Mus3 LINE L1 -2 6636 6316 6 1136 336 256 35 0 chr1 72300504 72300590 -124894842 - B3A SINE B2 -109 89 1 6 1136 180 176 0 0 chr1 72300602 72300636 -124894796 + A-rich Low_complexity Low_complexity 2 35 0 6 1136 342 0 0 0 chr1 72300763 72300801 -124894631 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1136 426 276 54 23 chr1 72300802 72300932 -124894500 - RSINE1 SINE B4 -11 154 21 6 1136 1647 32 0 0 chr1 72301581 72301768 -124893664 + U2 snRNA snRNA 1 187 -1 6 1136 342 233 14 0 chr1 72302362 72302435 -124892997 + B1_Mur4 SINE Alu 45 118 -32 6 1136 226 345 0 106 chr1 72302664 72302758 -124892674 - B4A SINE B4 -44 248 165 6 1136 305 200 0 0 chr1 72303881 72303936 -124891496 + URR1B DNA MER1_type 110 164 -61 6 1136 445 302 197 33 chr1 72304051 72304417 -124891015 + LTR41 LTR ERVL 306 731 -37 6 1136 425 257 69 0 chr1 72304746 72304761 -124890671 - PB1D10 SINE Alu -4 113 6 6 1136 477 163 81 0 chr1 72304761 72304847 -124890585 - ID_B1 SINE B4 -45 179 87 6 1136 1151 102 60 0 chr1 72304923 72305089 -124890343 - B2_Mm2 SINE B2 -18 177 2 6 1136 2286 89 13 3 chr1 72305219 72305535 -124889897 - ORR1A2 LTR MaLR -8 319 1 6 1136 592 222 45 85 chr1 72305535 72305711 -124889721 + B3A SINE B2 29 197 -1 6 1136 222 37 0 0 chr1 72306599 72306626 -124888806 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1136 229 231 0 0 chr1 72306626 72306678 -124888754 - B4 SINE B4 -77 215 164 6 1136 384 207 98 0 chr1 72306637 72306719 -124888713 - B1_Mur2 SINE Alu -34 115 26 6 1136 317 286 39 0 chr1 72306834 72306852 -124888580 + B4 SINE B4 65 85 -207 6 1136 372 182 45 0 chr1 72306852 72306918 -124888514 + PB1D9 SINE Alu 1 69 -51 6 1136 239 0 32 0 chr1 72306943 72306974 -124888458 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1136 831 217 37 21 chr1 72307166 72307354 -124888078 - ID_B1 SINE B4 0 224 34 6 1136 751 205 58 69 chr1 72307397 72307586 -124887846 - B3 SINE B2 -4 212 26 6 1136 579 207 0 33 chr1 72307660 72307780 -124887652 - PB1D9 SINE Alu -2 118 3 6 1136 268 223 168 0 chr1 72307878 72307963 -124887469 + B1F SINE Alu 1 149 0 6 1136 1022 164 10 50 chr1 72307982 72308181 -124887251 + B2_Mm2 SINE B2 1 191 -4 6 1136 3208 191 208 62 chr1 72309320 72310444 -124884988 + RMER12 LTR ERVK 1 1274 -48 6 1136 3376 44 11 11 chr1 72310444 72310884 -124884548 + L1_Mus3 LINE L1 6188 6627 -11 6 1136 261 285 30 82 chr1 72310884 72310902 -124884530 + RMER12 LTR ERVK 1231 1248 -74 6 1136 271 342 13 0 chr1 72311006 72311085 -124884347 + RSINE1 SINE B4 85 164 -1 6 1136 324 0 0 0 chr1 72311093 72311129 -124884303 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1136 254 299 26 0 chr1 72311290 72311367 -124884065 + Charlie1a DNA MER1_type 114 192 -1263 6 1136 276 347 20 7 chr1 72311380 72311528 -124883904 + RSINE1 SINE B4 2 151 -14 6 1136 854 126 0 0 chr1 72311549 72311668 -124883764 + PB1D9 SINE Alu 2 120 0 6 1136 373 203 0 48 chr1 72311947 72312030 -124883402 - B3 SINE B2 0 216 138 6 1136 404 299 229 25 chr1 72312130 72312483 -124882949 + Charlie1a DNA MER1_type 541 965 -490 6 1136 536 246 38 89 chr1 72312486 72312722 -124882710 + ID_B1 SINE B4 1 224 0 6 1136 1210 41 21 0 chr1 72312765 72312910 -124882522 + B1_Mus1 SINE Alu 1 148 0 6 1136 412 246 119 0 chr1 72312932 72313050 -124882382 + B3A SINE B2 35 166 -32 6 1136 325 328 16 70 chr1 72313136 72313151 -124882281 - ID_B1 SINE B4 -9 215 95 6 1136 585 229 0 35 chr1 72313151 72313264 -124882168 - B1_Mur1 SINE Alu -27 122 14 6 1136 492 227 116 69 chr1 72313338 72313527 -124881905 - B3A SINE B2 0 198 1 6 1136 314 250 0 0 chr1 72314154 72314226 -124881206 + ID4 SINE ID 2 73 -10 6 1136 26 30 0 0 chr1 72314641 72314674 -124880758 + AT_rich Low_complexity Low_complexity 1 33 0 6 1136 403 298 17 150 chr1 72314677 72314910 -124880522 - B4A SINE B4 0 292 91 6 1136 505 208 10 0 chr1 72315091 72315187 -124880245 + ID_B1 SINE B4 121 217 -7 6 1136 688 277 127 41 chr1 72315194 72315461 -124879971 + B4A SINE B4 1 290 -2 6 1136 920 122 28 7 chr1 72315500 72315641 -124879791 - B1_Mus1 SINE Alu -4 144 1 6 1136 779 254 105 13 chr1 72315987 72316228 -124879204 - B4A SINE B4 -44 248 1 6 1136 669 247 41 35 chr1 72316251 72316448 -124878984 - B3A SINE B2 0 198 1 6 1136 328 135 0 26 chr1 72316682 72316758 -124878674 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1136 1653 26 5 0 chr1 72317218 72317410 -124878022 - B2_Mm1t SINE B2 0 193 1 7 1136 366 23 0 0 chr1 72317449 72317492 -124877940 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1136 566 241 11 95 chr1 72317499 72317678 -124877754 - RSINE1 SINE B4 0 165 2 7 1136 507 282 16 0 chr1 72317799 72317923 -124877509 + RSINE1 SINE B4 34 159 -6 7 1136 332 246 181 37 chr1 72317968 72318128 -124877304 + B1_Mur3 SINE Alu 1 149 0 7 1136 1352 90 17 0 chr1 72318137 72318314 -124877118 + B2_Mm2 SINE B2 2 181 -14 7 1136 321 26 0 0 chr1 72318677 72318715 -124876717 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1136 353 275 122 15 chr1 72318738 72318934 -124876498 + L1MB7 LINE L1 5924 6140 -44 7 1136 267 347 0 0 chr1 72318934 72319006 -124876426 + ID4_ SINE ID 1 72 -11 7 1136 420 20 0 0 chr1 72319006 72319055 -124876377 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1136 589 235 197 107 chr1 72319789 72320089 -124875343 + MTEa LTR MaLR 52 378 -1 7 1136 252 200 18 0 chr1 72320321 72320376 -124875056 - MER53 DNA hAT -5 188 133 7 1136 725 140 13 117 chr1 72320391 72320545 -124874887 - ORR1D1 LTR MaLR -232 142 5 7 1136 1218 224 14 14 chr1 72320585 72320861 -124874571 + B4A SINE B4 5 280 -12 7 1136 2000 154 62 24 chr1 72320929 72321301 -124874131 - ORR1B1 LTR MaLR -8 386 1 7 1136 242 266 47 0 chr1 72321636 72321700 -124873732 - ID_B1 SINE B4 -1 223 157 7 1136 580 320 5 69 chr1 72321869 72322057 -124873375 - ID_B1 SINE B4 -8 216 41 7 1136 525 32 0 0 chr1 72322142 72322205 -124873227 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 1136 774 181 0 0 chr1 72322252 72322383 -124873049 + B1_Mus1 SINE Alu 6 136 -12 7 1136 315 0 0 0 chr1 72322383 72322418 -124873014 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1136 255 31 0 0 chr1 72322536 72322568 -124872864 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1136 1162 44 0 0 chr1 72322568 72322704 -124872728 - B1_Mus2 SINE Alu -7 140 5 7 1136 1305 146 13 31 chr1 72323256 72323483 -124871949 + URR1A DNA MER1_type 2 224 -2 7 1136 1101 38 8 0 chr1 72323552 72323685 -124871747 - B1_Mus1 SINE Alu -14 134 1 7 1136 216 266 24 71 chr1 72324035 72324120 -124871312 + B4A SINE B4 2 82 -210 7 1136 1023 223 25 10 chr1 72324053 72324252 -124871180 + B3 SINE B2 15 216 0 7 1136 672 24 0 0 chr1 72324378 72324460 -124870972 + (CA)n Simple_repeat Simple_repeat 2 83 0 7 1136 38 0 0 0 chr1 72325022 72325060 -124870372 + AT_rich Low_complexity Low_complexity 1 38 0 7 1136 381 308 135 88 chr1 72325080 72325354 -124870078 + L1MEg LINE L1 1434 1538 -4877 7 1136 724 244 23 98 chr1 72325354 72325568 -124869864 + B3A SINE B2 1 198 0 7 1136 381 267 193 113 chr1 72325568 72325863 -124869569 + L1MEg LINE L1 1539 1852 -4563 7 1136 482 310 76 81 chr1 72325918 72326311 -124869121 + Lx8 LINE L1 7083 7473 0 7 1136 358 295 53 23 chr1 72326314 72326446 -124868986 + L1MEg LINE L1 1847 1982 -4418 7 1136 993 86 6 85 chr1 72326446 72326611 -124868821 + B2_Mm2 SINE B2 2 153 -42 7 1136 357 125 0 0 chr1 72326611 72326667 -124868765 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1136 189 0 0 0 chr1 72326667 72326687 -124868745 + (CAGT)n Simple_repeat Simple_repeat 4 24 0 7 1136 791 156 0 8 chr1 72326687 72326810 -124868622 + B1_Mus2 SINE Alu 11 132 -15 7 1136 807 315 126 16 chr1 72326823 72327204 -124868228 + Tigger6a DNA MER2_type 232 654 -429 7 1136 663 180 0 9 chr1 72327214 72327326 -124868106 - PB1D9 SINE Alu -9 111 1 7 1136 360 241 66 22 chr1 72327329 72327465 -124867967 - L1MA7 LINE L1 0 6291 6150 7 1136 432 222 36 36 chr1 72327495 72327607 -124867825 + PB1D7 SINE Alu 4 115 -5 7 1136 293 278 0 14 chr1 72327642 72327715 -124867717 + ID4_ SINE ID 2 73 -10 7 1136 337 304 0 32 chr1 72327737 72327751 -124867681 + B4 SINE B4 77 87 -205 7 1136 463 278 0 0 chr1 72327751 72327848 -124867584 + PB1D9 SINE Alu 3 99 -21 7 1136 369 0 0 0 chr1 72327930 72327971 -124867461 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1136 302 209 134 0 chr1 72327971 72328038 -124867394 - RSINE1 SINE B4 -25 140 65 7 1136 324 48 0 0 chr1 72328343 72328385 -124867047 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7 1136 526 291 19 0 chr1 72328587 72328745 -124866687 - RSINE1 SINE B4 -2 163 3 7 1136 622 235 97 13 chr1 72328881 72329036 -124866396 + B3A SINE B2 1 168 -30 7 1136 23 0 0 0 chr1 72329423 72329446 -124865986 + AT_rich Low_complexity Low_complexity 1 23 0 7 1136 1381 70 11 26 chr1 72329672 72329863 -124865569 + B2_Mm2 SINE B2 2 189 -6 7 1136 832 206 0 0 chr1 72329960 72330101 -124865331 - B1_Mur4 SINE Alu -7 143 3 7 1136 1115 49 7 14 chr1 72330137 72330283 -124865149 + B1_Mm SINE Alu 3 147 0 7 1136 21 0 0 0 chr1 72331749 72331770 -124863662 + AT_rich Low_complexity Low_complexity 1 21 0 7 1136 882 134 7 21 chr1 72331770 72331915 -124863517 - B1_Mur2 SINE Alu -5 144 2 7 1136 360 0 0 0 chr1 72331951 72331991 -124863441 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1136 402 283 18 28 chr1 72331991 72332100 -124863332 - RSINE1 SINE B4 -46 119 12 7 1136 407 52 17 0 chr1 72332571 72332629 -124862803 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1136 407 277 68 45 chr1 72332632 72332856 -124862576 - B4A SINE B4 -18 274 1 7 1136 558 0 0 0 chr1 72333044 72333106 -124862326 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1136 180 0 0 0 chr1 72333655 72333675 -124861757 + (CCCCCT)n Simple_repeat Simple_repeat 3 22 0 7 1136 485 305 6 29 chr1 72334766 72334938 -124860494 + B3A SINE B2 15 182 -16 7 1136 886 286 50 29 chr1 72334998 72335279 -124860153 - B4 SINE B4 0 292 6 7 1136 750 223 0 13 chr1 72335297 72335447 -124859985 - B1_Mur2 SINE Alu -1 148 1 7 1136 1403 98 0 15 chr1 72335714 72335912 -124859520 - B2_Mm2 SINE B2 0 195 1 7 1136 775 276 0 25 chr1 72335954 72336155 -124859277 - B3 SINE B2 -19 197 2 7 1136 582 254 14 7 chr1 72336186 72336325 -124859107 + RSINE1 SINE B4 7 146 -19 7 1136 1432 158 181 35 chr1 72336383 72336531 -124858901 - RMER10A LTR ERVL -5 437 253 7 1136 617 38 12 0 chr1 72336531 72336611 -124858821 + (GA)n Simple_repeat Simple_repeat 1 81 0 7 1136 1432 158 181 35 chr1 72336611 72336837 -124858595 - RMER10A LTR ERVL -190 252 8 7 1136 1218 41 7 0 chr1 72337368 72337513 -124857919 + B1_Mus2 SINE Alu 2 147 0 7 1136 219 36 0 0 chr1 72337522 72337550 -124857882 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1136 183 205 0 0 chr1 72338346 72338385 -124857047 + T-rich Low_complexity Low_complexity 1 39 0 7 1136 971 251 0 9 chr1 72338389 72338602 -124856830 - B3 SINE B2 -4 212 2 7 1136 256 212 121 0 chr1 72339021 72339087 -124856345 - MLT1J LTR MaLR -337 175 102 7 1136 962 148 0 0 chr1 72339100 72339235 -124856197 - B1_Mus1 SINE Alu -11 137 3 7 1136 234 0 0 0 chr1 72339250 72339276 -124856156 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 1136 622 287 42 0 chr1 72339305 72339472 -124855960 - B3A SINE B2 -22 176 3 7 1136 301 292 45 54 chr1 72339547 72339659 -124855773 + B3A SINE B2 87 197 -1 7 1136 598 233 0 25 chr1 72340367 72340486 -124854946 - PB1D10 SINE Alu -1 116 1 7 1136 502 227 42 8 chr1 72341140 72341260 -124854172 - B4A SINE B4 -168 124 1 7 1136 299 65 22 0 chr1 72341450 72341496 -124853936 + (TTG)n Simple_repeat Simple_repeat 2 48 0 7 1136 710 223 14 0 chr1 72341496 72341635 -124853797 - B1_Mur2 SINE Alu -8 141 1 7 1136 3130 66 5 10 chr1 72341808 72342206 -124853226 + MTA_Mm LTR MaLR 1 396 0 7 1136 270 81 0 0 chr1 72342714 72342751 -124852681 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 1136 1317 74 17 0 chr1 72342964 72343139 -124852293 + B2_Mm1t SINE B2 2 179 -14 7 1136 310 93 18 36 chr1 72343187 72343243 -124852189 + B2_Mm2 SINE B2 47 101 -94 7 1136 246 62 0 0 chr1 72343256 72343288 -124852144 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 7 1136 1230 158 21 68 chr1 72343410 72343614 -124851818 + URR1A DNA MER1_type 1 195 -31 7 1136 1580 32 5 0 chr1 72343614 72343800 -124851632 + B2_Mm1t SINE B2 1 187 -6 7 1136 1230 158 21 68 chr1 72343800 72343832 -124851600 + URR1A DNA MER1_type 196 226 0 7 1136 559 239 26 0 chr1 72345055 72345172 -124850260 + PB1D7 SINE Alu 1 120 0 7 1136 240 59 0 0 chr1 72345173 72345207 -124850225 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1136 359 41 0 20 chr1 72345219 72345269 -124850163 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 7 1136 1239 54 0 0 chr1 72345315 72345462 -124849970 - B1_Mus2 SINE Alu 0 147 1 7 1136 360 0 0 0 chr1 72346354 72346394 -124849038 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1136 1755 136 107 78 chr1 72346407 72346790 -124848642 - ORR1B1 LTR MaLR 0 394 1 7 1136 333 0 0 0 chr1 72346791 72346828 -124848604 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1136 493 335 33 5 chr1 72348521 72348731 -124846701 - MLT1J LTR MaLR -272 240 25 7 1136 21 36 0 0 chr1 72348802 72348830 -124846602 + AT_rich Low_complexity Low_complexity 1 28 0 7 1136 345 47 0 0 chr1 72349367 72349410 -124846022 + (TTA)n Simple_repeat Simple_repeat 2 44 0 7 1136 558 260 135 6 chr1 72349793 72349971 -124845461 - B3 SINE B2 -10 206 6 7 1136 198 0 0 0 chr1 72350083 72350105 -124845327 + (CTTA)n Simple_repeat Simple_repeat 2 23 0 7 1136 1002 171 11 0 chr1 72350297 72350472 -124844960 + RLTR28B LTR ERVL 1 177 -304 8 1136 2364 186 29 54 chr1 72350473 72350991 -124844441 - RMER15 LTR ERVL -62 513 9 8 1136 2881 137 49 55 chr1 72351325 72351605 -124843827 - RLTR28 LTR ERVL 0 524 249 8 17 1071 89 7 0 chr1 72351605 72351751 -124843681 - B1_Mus2 SINE Alu 0 147 1 8 1137 2881 137 49 55 chr1 72351751 72351996 -124843436 - RLTR28 LTR ERVL -276 248 2 8 1137 291 28 0 0 chr1 72352232 72352268 -124843164 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1137 250 216 27 0 chr1 72352301 72352375 -124843057 + GA-rich Low_complexity Low_complexity 1 76 0 8 1137 1027 207 33 9 chr1 72352577 72352787 -124842645 - B3 SINE B2 0 216 2 8 1137 852 43 0 9 chr1 72353216 72353332 -124842100 - B2_Mm2 SINE B2 0 195 81 8 1137 282 295 183 51 chr1 72353553 72353728 -124841704 - B3A SINE B2 0 198 1 8 1137 22 0 0 0 chr1 72353755 72353777 -124841655 + AT_rich Low_complexity Low_complexity 1 22 0 8 1137 482 283 16 8 chr1 72353796 72353924 -124841508 - RSINE1 SINE B4 -34 131 3 8 1137 322 292 51 25 chr1 72354570 72354728 -124840704 - MIRb SINE MIR -15 253 92 8 1137 345 293 96 12 chr1 72355752 72355918 -124839514 - MIR3 SINE MIR -6 202 23 8 1137 729 262 54 54 chr1 72356170 72356412 -124839020 + MTE2a LTR MaLR 1 242 -137 8 1137 667 239 6 31 chr1 72356566 72356726 -124838706 + MTE2a LTR MaLR 222 377 -2 8 1137 235 328 58 33 chr1 72357353 72357473 -124837959 + MIR SINE MIR 2 124 -138 8 1137 1358 101 11 0 chr1 72357543 72357732 -124837700 + B2_Mm1t SINE B2 1 191 -2 8 1137 1021 103 14 0 chr1 72357737 72357882 -124837550 + B1_Mus2 SINE Alu 1 147 0 8 1137 262 330 19 29 chr1 72357954 72358057 -124837375 - MLT1H1 LTR MaLR -395 160 59 8 1137 450 274 129 0 chr1 72358218 72358342 -124837090 + B1F SINE Alu 3 142 -7 8 1137 438 240 50 109 chr1 72358346 72358547 -124836885 - MTE2a LTR MaLR 0 419 201 8 1137 849 192 92 15 chr1 72358593 72358789 -124836643 + B3 SINE B2 1 211 -5 8 1137 869 117 306 39 chr1 72359459 72359560 -124835872 - ORR1B2 LTR MaLR -73 294 168 8 1137 832 54 0 30 chr1 72359560 72359693 -124835739 + (GA)n Simple_repeat Simple_repeat 1 129 0 8 1137 869 117 306 39 chr1 72359693 72359823 -124835609 - ORR1B2 LTR MaLR -200 167 1 8 1137 963 271 132 16 chr1 72359942 72360313 -124835119 - MTD LTR MaLR 0 419 6 8 1137 329 314 50 25 chr1 72361672 72361832 -124833600 - RSINE1 SINE B4 0 165 2 8 1137 1223 41 0 0 chr1 72361848 72361994 -124833438 - B1_Mus2 SINE Alu 0 147 2 8 1137 209 333 0 0 chr1 72362784 72362844 -124832588 - L3b LINE CR1 -226 256 197 8 1137 1165 222 5 0 chr1 72363963 72364175 -124831257 - B3 SINE B2 -3 213 1 8 1137 288 220 0 63 chr1 72364377 72364440 -124830992 - ID4 SINE ID -24 59 1 8 1137 987 143 77 0 chr1 72364649 72364845 -124830587 + RMER1A Other Other 806 1016 -14 8 1137 255 333 111 22 chr1 72364900 72365081 -124830351 - MLT1A1 LTR MaLR 0 408 169 8 1137 1436 88 0 30 chr1 72366179 72366379 -124829053 - B2_Mm2 SINE B2 -1 194 1 8 1137 2577 294 108 104 chr1 72366390 72367015 -124828417 - Lx8 LINE L1 -17 7456 6826 8 1137 296 167 0 0 chr1 72367015 72367075 -124828357 + B2_Mm2 SINE B2 1 60 -135 8 1137 2577 294 108 104 chr1 72367075 72367787 -124827645 - Lx8 LINE L1 -17 6825 6104 8 1137 1053 198 24 0 chr1 72367787 72367994 -124827438 - B3 SINE B2 -4 212 1 8 1137 2577 294 108 104 chr1 72367994 72368052 -124827380 - Lx8 LINE L1 -1370 6103 6027 8 1137 435 19 0 0 chr1 72368052 72368104 -124827328 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1137 2577 262 153 34 chr1 72368104 72368534 -124826898 - Lx8 LINE L1 -1447 6026 5520 8 1137 200 42 0 0 chr1 72368664 72368688 -124826744 + (TTC)n Simple_repeat Simple_repeat 2 25 0 8 1137 951 165 0 0 chr1 72368688 72368864 -124826568 + CT-rich Low_complexity Low_complexity 3 178 0 8 1137 376 198 207 41 chr1 72369064 72369185 -124826247 + B1_Mus1 SINE Alu 2 142 -6 8 1137 1338 94 5 5 chr1 72369200 72369393 -124826039 + B2_Mm2 SINE B2 1 193 -2 8 1137 22 0 0 0 chr1 72370452 72370474 -124824958 + AT_rich Low_complexity Low_complexity 1 22 0 8 1137 755 116 115 8 chr1 72370902 72371024 -124824408 - B1_Mus2 SINE Alu -12 135 1 8 1137 951 238 185 28 chr1 72373933 72374257 -124821175 - MTEb LTR MaLR 0 379 5 8 1137 556 306 43 128 chr1 72374934 72375027 -124820405 + B4A SINE B4 2 97 -195 8 1137 808 141 28 21 chr1 72375027 72375172 -124820260 + B1_Mus2 SINE Alu 2 147 0 8 1137 556 306 43 128 chr1 72375172 72375187 -124820245 + B4A SINE B4 98 98 -194 8 1137 198 0 0 0 chr1 72375187 72375209 -124820223 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 8 1137 426 39 0 0 chr1 72375219 72375271 -124820161 + (TAAAA)n Simple_repeat Simple_repeat 3 54 0 8 1137 556 306 43 128 chr1 72375271 72375454 -124819978 + B4A SINE B4 98 279 -13 8 1137 405 255 0 0 chr1 72376771 72376928 -124818504 + (TG)n Simple_repeat Simple_repeat 2 158 0 8 1137 609 270 30 14 chr1 72376937 72377137 -124818295 - B3A SINE B2 -13 203 2 8 1137 216 97 0 0 chr1 72377382 72377413 -124818019 + (TTA)n Simple_repeat Simple_repeat 2 32 0 8 1137 647 207 30 0 chr1 72377417 72377552 -124817880 - B1_Mus2 SINE Alu -7 140 2 8 1137 295 317 56 48 chr1 72377447 72377573 -124817859 - B4 SINE B4 -94 198 72 8 1137 611 241 54 30 chr1 72377767 72377934 -124817498 + B3A SINE B2 2 172 -26 8 1137 240 35 0 0 chr1 72377941 72377970 -124817462 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1137 207 0 0 0 chr1 72377975 72377998 -124817434 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 8 1137 1063 152 39 14 chr1 72378238 72378445 -124816987 - B3 SINE B2 -2 214 3 8 1137 394 260 90 0 chr1 72378455 72378555 -124816877 - PB1D9 SINE Alu -6 114 6 8 1137 343 309 71 25 chr1 72379024 72379263 -124816169 - MIRb SINE MIR -1 267 18 8 1137 730 239 33 22 chr1 72379804 72379984 -124815448 - B3A SINE B2 -16 182 1 8 1137 282 198 870 0 chr1 72380728 72380837 -124814595 - B3A SINE B2 -10 206 3 8 1137 252 0 0 0 chr1 72381346 72381374 -124814058 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1137 634 172 17 0 chr1 72381374 72381490 -124813942 - B1_Mus1 SINE Alu -13 135 18 8 1137 1609 156 20 14 chr1 72381872 72382164 -124813268 + MurSatRep1 Unknown Unknown 1537 1830 -307 8 1137 680 70 0 0 chr1 72382200 72382300 -124813132 - L1Md_F3 LINE L1 -9 6575 6476 8 1137 211 50 24 48 chr1 72382733 72382775 -124812657 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1137 444 82 0 0 chr1 72383867 72383928 -124811504 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1137 669 312 62 0 chr1 72384890 72385114 -124810318 - B4A SINE B4 -2 290 53 8 1137 304 344 16 8 chr1 72385847 72385970 -124809462 - MER5A1 DNA MER1_type -40 126 3 8 1137 240 269 15 15 chr1 72387578 72387646 -124807786 - ID4_ SINE ID -14 69 2 8 1137 23 0 0 0 chr1 72388547 72388570 -124806862 + AT_rich Low_complexity Low_complexity 1 23 0 8 1137 662 218 13 13 chr1 72388685 72388834 -124806598 - B1_Mur2 SINE Alu 0 149 1 8 1137 991 202 64 5 chr1 72388863 72389067 -124806365 - B3 SINE B2 0 216 1 8 1137 492 220 0 0 chr1 72389076 72389194 -124806238 + CT-rich Low_complexity Low_complexity 3 120 0 8 1137 833 191 7 7 chr1 72389245 72389393 -124806039 - B1_Mur4 SINE Alu -1 149 2 8 1137 677 164 19 1 chr1 72389791 72389924 -124805508 - B1_Mur1 SINE Alu 0 149 13 8 1137 336 275 27 40 chr1 72390121 72390269 -124805163 + L1M2 LINE L1 5051 5196 -947 8 1137 300 246 29 0 chr1 72390712 72390781 -124804651 + ID4_ SINE ID 2 72 -11 8 1137 748 161 256 0 chr1 72390898 72391078 -124804354 + URR1A DNA MER1_type 1 226 0 8 1137 183 361 24 0 chr1 72391272 72391355 -124804077 - L2a LINE L2 0 3426 3342 8 1137 236 324 67 82 chr1 72391882 72392077 -124803355 - ORR1E LTR MaLR -133 226 35 8 1137 270 115 0 0 chr1 72392178 72392230 -124803202 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 8 1137 225 65 0 0 chr1 72393353 72393384 -124802048 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1137 290 255 227 36 chr1 72393389 72393499 -124801933 - RSINE1 SINE B4 0 165 35 8 1137 230 193 0 81 chr1 72395210 72395272 -124800160 + RSINE1 SINE B4 3 59 -106 8 1137 231 268 172 12 chr1 72395776 72395946 -124799486 + MIRb SINE MIR 29 234 -34 8 1137 261 128 0 0 chr1 72395952 72395999 -124799433 + (CATAT)n Simple_repeat Simple_repeat 5 51 0 8 1137 260 65 0 42 chr1 72396551 72396599 -124798833 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 8 1137 1233 48 0 0 chr1 72396605 72396752 -124798680 - B1_Mus1 SINE Alu -1 147 1 8 1137 227 359 53 42 chr1 72396979 72397186 -124798246 - MIR SINE MIR -48 220 6 8 1137 673 295 55 116 chr1 72397941 72398085 -124797347 - MER21B LTR ERV1 -422 441 307 8 1137 1228 174 35 0 chr1 72398085 72398286 -124797146 - B3 SINE B2 -7 209 2 8 1137 673 295 55 116 chr1 72398286 72398486 -124796946 - MER21B LTR ERV1 -557 306 118 8 1137 568 285 73 0 chr1 72398522 72398673 -124796759 - RSINE1 SINE B4 0 165 4 8 1137 700 219 58 252 chr1 72399426 72399787 -124795645 - B4 SINE B4 0 292 2 8 1137 241 26 26 26 chr1 72399835 72399874 -124795558 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1137 365 168 30 53 chr1 72399881 72400013 -124795419 - RMER17B LTR ERVK -511 447 319 8 1137 21 36 0 0 chr1 72400332 72400360 -124795072 + AT_rich Low_complexity Low_complexity 1 28 0 8 1137 482 167 184 9 chr1 72401276 72401385 -124794047 + B3A SINE B2 1 128 -70 8 1137 694 249 30 56 chr1 72401389 72401657 -124793775 + RLTR15 LTR ERVK 4 264 -95 8 1137 26 0 0 0 chr1 72401798 72401824 -124793608 + AT_rich Low_complexity Low_complexity 1 26 0 8 1137 247 360 32 53 chr1 72402699 72402793 -124792639 - RSINE1 SINE B4 0 165 74 8 1137 1294 234 30 88 chr1 72402931 72403329 -124792103 + MTE2a LTR MaLR 3 377 -2 9 1137 797 145 56 42 chr1 72404072 72404216 -124791216 - B1_Mus2 SINE Alu 0 147 2 9 1137 826 170 0 0 chr1 72404690 72404825 -124790607 + B1_Mus2 SINE Alu 1 135 -12 9 1137 366 23 0 0 chr1 72404827 72404870 -124790562 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 9 1137 410 152 231 28 chr1 72405183 72405291 -124790141 - B1_Mus1 SINE Alu -5 143 14 9 1137 1165 69 7 0 chr1 72405292 72405437 -124789995 + B1_Mus2 SINE Alu 2 147 0 9 1137 1317 66 50 6 chr1 72405882 72406064 -124789368 + B2_Mm2 SINE B2 3 192 -3 9 1137 251 200 0 35 chr1 72406113 72406170 -124789262 + GA-rich Low_complexity Low_complexity 2 56 0 9 1137 553 274 6 37 chr1 72406656 72406692 -124788740 - RSINE1 SINE B4 -6 159 126 9 1137 282 56 0 0 chr1 72406692 72406728 -124788704 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1137 553 274 6 37 chr1 72406728 72406854 -124788578 - RSINE1 SINE B4 -40 125 2 9 1137 315 0 0 0 chr1 72408721 72408756 -124786676 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 9 1137 510 61 0 0 chr1 72408756 72408821 -124786611 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 1137 23 0 0 0 chr1 72409119 72409142 -124786290 + AT_rich Low_complexity Low_complexity 1 23 0 9 1137 729 247 60 11 chr1 72409630 72409814 -124785618 + B4A SINE B4 13 205 -87 9 1137 265 189 179 51 chr1 72409817 72409895 -124785537 + RSINE1 SINE B4 4 91 -74 9 1137 234 143 0 0 chr1 72409902 72409951 -124785481 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1137 285 236 52 65 chr1 72409993 72410070 -124785362 + B4A SINE B4 216 291 -1 9 1137 863 156 71 60 chr1 72410077 72410261 -124785171 + RMER20B LTR ERVK 1 186 -441 9 1137 867 221 34 34 chr1 72410387 72410593 -124784839 - B3 SINE B2 -6 210 5 9 1137 26 30 0 0 chr1 72412152 72412185 -124783247 + AT_rich Low_complexity Low_complexity 1 33 0 9 1137 207 204 0 0 chr1 72412195 72412249 -124783183 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1137 287 272 184 35 chr1 72412261 72412402 -124783030 - RSINE1 SINE B4 -2 163 2 9 1137 307 256 188 30 chr1 72412683 72412816 -124782616 - B3A SINE B2 -16 182 29 9 1137 345 233 44 0 chr1 72412817 72412907 -124782525 - Lx9 LINE L1 -1034 6610 6517 9 1137 240 275 14 0 chr1 72412923 72412992 -124782440 - B4 SINE B4 -63 229 160 9 1137 1125 62 21 0 chr1 72413110 72413254 -124782178 - B1_Mus2 SINE Alu 0 147 1 9 1137 586 218 19 36 chr1 72413292 72413441 -124781991 - B1F2 SINE Alu -8 141 2 9 1137 268 326 132 8 chr1 72413445 72413711 -124781721 - L1M4 LINE L1 -3270 2876 2578 9 1137 28 48 0 0 chr1 72414225 72414267 -124781165 + AT_rich Low_complexity Low_complexity 1 42 0 9 1137 449 131 12 0 chr1 72414279 72414363 -124781069 + (TA)n Simple_repeat Simple_repeat 1 85 0 9 1137 807 212 20 45 chr1 72414366 72414564 -124780868 - B3 SINE B2 -23 193 1 9 1137 406 287 9 0 chr1 72414590 72414698 -124780734 + B3 SINE B2 81 189 -27 9 1137 363 23 0 0 chr1 72414702 72414746 -124780686 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1137 28 29 0 0 chr1 72414771 72414806 -124780626 + AT_rich Low_complexity Low_complexity 1 35 0 9 1137 250 235 13 212 chr1 72414878 72415029 -124780403 - B3 SINE B2 -10 206 86 9 1137 1211 221 59 45 chr1 72415050 72415401 -124780031 + MTE2a LTR MaLR 53 405 -14 9 1137 601 178 22 35 chr1 72415848 72416018 -124779414 - Lx9 LINE L1 -91 7553 7348 9 1137 884 112 44 15 chr1 72416016 72416152 -124779280 - Lx9 LINE L1 -439 7205 7066 9 1137 526 312 68 0 chr1 72416200 72416421 -124779011 - MLT1C LTR MaLR -52 415 180 9 1137 345 222 139 0 chr1 72416433 72416541 -124778891 - MLT1C LTR MaLR -344 123 1 9 1137 1525 222 32 21 chr1 72418159 72418404 -124777028 - MTEa LTR MaLR -2 377 135 9 1137 2063 146 10 52 chr1 72418404 72418787 -124776645 - ORR1B2 LTR MaLR 0 367 1 9 1137 1525 222 32 21 chr1 72418787 72418913 -124776519 - MTEa LTR MaLR -245 134 2 9 1137 1600 56 0 5 chr1 72421071 72421267 -124774165 + B2_Mm2 SINE B2 1 195 0 9 1137 468 91 22 11 chr1 72421472 72421561 -124773871 + (TA)n Simple_repeat Simple_repeat 2 91 0 9 1137 253 350 74 34 chr1 72421976 72422124 -124773308 + LTR33A LTR ERVL 81 234 -286 9 1137 1446 122 18 0 chr1 72422351 72422572 -124772860 - URR1B DNA MER1_type 0 225 1 9 1137 233 125 0 18 chr1 72423756 72423813 -124771619 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 9 1137 591 213 13 60 chr1 72424542 72424692 -124770740 - RSINE1 SINE B4 -15 150 8 9 1137 351 0 0 0 chr1 72425040 72425079 -124770353 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1137 568 221 15 37 chr1 72425080 72425216 -124770216 - B4A SINE B4 -22 270 138 9 1137 180 111 0 0 chr1 72425441 72425468 -124769964 + (TTG)n Simple_repeat Simple_repeat 2 28 0 9 1137 234 0 0 0 chr1 72426987 72427013 -124768419 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1137 732 246 0 84 chr1 72427230 72427443 -124767989 - B3A SINE B2 -2 196 2 9 1137 384 178 0 0 chr1 72427458 72427531 -124767901 + CT-rich Low_complexity Low_complexity 3 75 0 9 1137 209 259 0 18 chr1 72427533 72427588 -124767844 + C-rich Low_complexity Low_complexity 4 57 0 9 1137 1097 128 0 6 chr1 72427592 72427773 -124767659 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1137 348 83 0 0 chr1 72427773 72427821 -124767611 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 9 1137 764 174 27 14 chr1 72427849 72427995 -124767437 - B1_Mur3 SINE Alu 0 149 2 9 1137 344 221 0 112 chr1 72427900 72428007 -124767425 - MT2B LTR ERVL -352 249 155 9 1137 383 274 18 0 chr1 72429336 72429449 -124765983 - ID_B1 SINE B4 -16 208 94 9 1137 210 162 0 0 chr1 72430115 72430152 -124765280 + (TATG)n Simple_repeat Simple_repeat 1 37 0 9 1137 354 45 0 0 chr1 72430163 72430207 -124765225 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1137 455 275 19 63 chr1 72430670 72430829 -124764603 - RSINE1 SINE B4 0 165 14 9 1137 307 354 92 26 chr1 72431140 72431531 -124763901 - Charlie13b DNA Charlie -78 434 18 9 1137 227 125 42 0 chr1 72431721 72431769 -124763663 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 9 1137 384 156 39 13 chr1 72431770 72431848 -124763584 - ID_B1 SINE B4 0 224 145 9 1137 279 0 0 0 chr1 72431862 72431893 -124763539 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1137 381 230 116 90 chr1 72431939 72432207 -124763225 - B4 SINE B4 -14 278 4 9 1137 518 243 20 40 chr1 72432208 72432358 -124763074 - ID_B1 SINE B4 -67 157 11 9 1137 204 97 0 0 chr1 72432581 72432612 -124762820 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1137 500 235 81 0 chr1 72433233 72433369 -124762063 - MLT2C2 LTR ERVL -287 177 31 9 1137 268 253 12 37 chr1 72434142 72434224 -124761208 + (TATG)n Simple_repeat Simple_repeat 1 80 0 9 1137 450 178 11 0 chr1 72434315 72434405 -124761027 - MTD LTR MaLR -22 397 307 9 1137 252 297 0 38 chr1 72434481 72434586 -124760846 - Lx7 LINE L1 -30 7666 7566 9 1137 1436 240 17 3 chr1 72434612 72434900 -124760532 - Lx7 LINE L1 -840 6856 6565 9 1137 710 244 127 6 chr1 72435671 72435852 -124759580 - B3 SINE B2 -4 212 10 9 1137 304 200 211 0 chr1 72435869 72435964 -124759468 + PB1D10 SINE Alu 3 117 0 9 1137 450 196 0 0 chr1 72435964 72436056 -124759376 + GA-rich Low_complexity Low_complexity 2 93 0 9 1137 333 68 0 0 chr1 72436199 72436243 -124759189 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1137 224 114 0 28 chr1 72436318 72436354 -124759078 + (TCC)n Simple_repeat Simple_repeat 2 36 0 9 1137 422 36 18 0 chr1 72436354 72436410 -124759022 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1137 293 276 16 24 chr1 72436736 72436862 -124758570 - L1M5 LINE L1 -352 5810 5686 9 1137 349 271 96 91 chr1 72437147 72437346 -124758086 - ID_B1 SINE B4 -7 217 18 9 1137 481 295 7 7 chr1 72437400 72437540 -124757892 - B1F SINE Alu -5 144 5 9 1137 22 35 0 0 chr1 72438267 72438296 -124757136 + AT_rich Low_complexity Low_complexity 1 29 0 9 1137 557 167 107 8 chr1 72441946 72442067 -124753365 - B1_Mm SINE Alu -14 133 1 9 1137 590 247 47 24 chr1 72442354 72442524 -124752908 - B3A SINE B2 -18 180 7 9 1137 734 183 261 16 chr1 72442826 72443144 -124752288 - RLTR11A2 LTR ERVK -16 511 116 9 1137 1043 186 71 9 chr1 72443357 72443569 -124751863 + URR1B DNA MER1_type 1 225 0 9 1137 245 0 86 0 chr1 72444301 72444336 -124751096 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 9 1137 630 161 75 75 chr1 72444342 72444476 -124750956 - B1_Mus2 SINE Alu -1 146 13 9 1137 255 172 90 162 chr1 72444382 72444493 -124750939 - RLTR25B LTR ERVK -526 502 400 9 1137 2938 39 0 0 chr1 72444679 72445011 -124750421 + IAPEY3_LTR LTR ERVK 1 332 0 9 1137 518 285 57 0 chr1 72446189 72446312 -124749120 - RSINE1 SINE B4 -32 133 4 9 1137 222 37 0 0 chr1 72446641 72446668 -124748764 + (TCC)n Simple_repeat Simple_repeat 2 28 0 9 1137 423 260 101 16 chr1 72446877 72447006 -124748426 - MLT1A1 LTR MaLR -1 407 268 9 1137 270 330 59 43 chr1 72447846 72448033 -124747399 + MIRb SINE MIR 34 223 -45 9 1137 345 176 0 0 chr1 72448632 72448706 -124746726 + GA-rich Low_complexity Low_complexity 1 74 0 9 1137 387 274 125 40 chr1 72448832 72448984 -124746448 - MLT1A1 LTR MaLR -300 167 3 9 1137 427 227 82 0 chr1 72450757 72450867 -124744565 + PB1D7 SINE Alu 2 120 0 9 1137 1239 246 108 3 chr1 72450900 72451243 -124744189 + MTE2a LTR MaLR 1 379 0 9 1137 554 287 221 92 chr1 72451322 72451625 -124743807 + MLT2B2 LTR ERVL 90 431 -84 9 1137 745 310 28 44 chr1 72451672 72451922 -124743510 + MER47B DNA MER2_type 6 251 -167 9 1137 442 320 90 73 chr1 72451925 72452225 -124743207 - ORR1E LTR MaLR -4 355 51 9 1137 180 0 0 0 chr1 72452454 72452474 -124742958 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 9 1137 659 171 9 0 chr1 72452479 72452590 -124742842 - B1_Mus2 SINE Alu 0 147 36 9 1137 603 276 166 27 chr1 72452662 72452980 -124742452 - RMER20B LTR ERVK -47 469 120 1 1137 296 356 29 9 chr1 72453649 72453754 -124741678 - PB1D10 SINE Alu -8 109 3 1 1137 268 320 125 33 chr1 72453680 72453759 -124741673 - B4A SINE B4 -125 167 83 1 1137 611 94 0 10 chr1 72453759 72453856 -124741576 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 1137 268 320 125 33 chr1 72453856 72453928 -124741504 - B4A SINE B4 -210 82 2 1 1137 3124 224 116 52 chr1 72454583 72455008 -124740424 + RCHARR1 DNA MER1_type 8 477 -497 1 1137 497 156 275 0 chr1 72455008 72455117 -124740315 + B1_Mur3 SINE Alu 1 139 -10 1 1137 3124 224 116 52 chr1 72455117 72455163 -124740269 + RCHARR1 DNA MER1_type 478 513 -461 1 1137 552 30 0 0 chr1 72455163 72455229 -124740203 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1137 606 14 0 0 chr1 72455229 72455299 -124740133 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1137 3124 224 116 52 chr1 72455299 72455734 -124739698 + RCHARR1 DNA MER1_type 514 973 -1 1 1137 572 283 29 0 chr1 72456267 72456405 -124739027 - ID_B1 SINE B4 -1 223 82 1 1137 299 325 57 8 chr1 72456633 72456757 -124738675 - MIR SINE MIR -127 135 6 1 1137 331 292 48 48 chr1 72457162 72457288 -124738144 - MER102c DNA MER1_type -82 249 124 1 1137 335 304 118 6 chr1 72457775 72457944 -124737488 + MIRb SINE MIR 41 228 -40 1 1137 419 304 57 21 chr1 72458131 72458272 -124737160 + MER33 DNA MER1_type 7 152 -172 1 1137 890 55 16 0 chr1 72458287 72458415 -124737017 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 1 1137 720 324 0 0 chr1 72458424 72458594 -124736838 - ID_B1 SINE B4 -22 202 33 1 1137 289 227 5 235 chr1 72458595 72458722 -124736710 + MER33 DNA MER1_type 162 257 -67 1 1137 1100 211 14 32 chr1 72458722 72458942 -124736490 - B3 SINE B2 0 216 1 1 1137 289 227 5 235 chr1 72458942 72459010 -124736422 + MER33 DNA MER1_type 258 312 -12 1 1137 266 269 282 8 chr1 72461703 72461834 -124733598 + LTR16B1 LTR ERVL 141 307 -173 1 1137 239 254 0 14 chr1 72461925 72461997 -124733435 - MLT1A1 LTR MaLR -5 403 333 1 1137 226 299 12 38 chr1 72462287 72462367 -124733065 - B3A SINE B2 0 198 121 1 1137 652 243 6 77 chr1 72462310 72462466 -124732966 - RSINE1 SINE B4 -6 159 15 1 1137 21 0 0 0 chr1 72462483 72462504 -124732928 + AT_rich Low_complexity Low_complexity 1 21 0 1 1137 300 320 13 0 chr1 72462530 72462605 -124732827 - RSINE1 SINE B4 -7 158 83 1 1137 431 321 28 77 chr1 72462630 72462812 -124732620 - B4A SINE B4 -118 174 2 1 1137 183 333 30 15 chr1 72462815 72462882 -124732550 + L2c LINE L2 3242 3309 -78 1 1137 183 321 157 43 chr1 72463179 72463319 -124732113 - L2c LINE L2 -221 3166 3011 1 1137 629 216 0 17 chr1 72464107 72464225 -124731207 - B3 SINE B2 -95 121 6 1 1137 500 256 63 16 chr1 72464245 72464372 -124731060 - B1F SINE Alu -8 141 9 1 1137 364 242 229 26 chr1 72464609 72464762 -124730670 - B3A SINE B2 -14 184 1 1 1137 1259 225 30 15 chr1 72464988 72465259 -124730173 + ORR1D1 LTR MaLR 100 374 0 1 1137 234 277 85 51 chr1 72465552 72465670 -124729762 - L1M5 LINE L1 -483 5641 5520 1 1137 385 152 62 12 chr1 72466273 72466353 -124729079 - RMER19B LTR ERVK -818 84 1 1 1137 274 272 109 0 chr1 72466999 72467091 -124728341 - MLT1K LTR MaLR -18 577 476 1 1137 204 262 0 101 chr1 72467929 72468018 -124727414 - MIRc SINE MIR -162 106 27 1 1137 397 357 45 70 chr1 72468082 72468395 -124727037 - RLTR25B LTR ERVK -723 305 1 1 1137 334 364 60 41 chr1 72469963 72470220 -124725212 + MIR SINE MIR 1 268 0 1 1137 526 263 166 5 chr1 72471822 72472009 -124723423 + MIR SINE MIR 37 253 -9 1 1137 267 313 24 0 chr1 72472216 72472299 -124723133 - L2a LINE L2 -2 3424 3340 1 1137 261 361 62 73 chr1 72472358 72472537 -124722895 + Tigger14a DNA MER2_type 57 233 -91 1 1137 371 248 145 0 chr1 72472623 72472740 -124722692 - B1F2 SINE Alu 0 149 16 1 1137 727 240 106 0 chr1 72472643 72472822 -124722610 - ID_B1 SINE B4 -20 204 7 1 1137 261 0 0 0 chr1 72473393 72473422 -124722010 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1137 238 294 26 97 chr1 72473449 72473562 -124721870 - RMER12 LTR ERVK -485 837 733 1 1137 594 28 0 0 chr1 72474123 72474195 -124721237 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1137 234 345 17 17 chr1 72474207 72474325 -124721107 + (CGTG)n Simple_repeat Simple_repeat 3 120 0 1 1137 425 19 0 18 chr1 72474778 72474833 -124720599 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1137 325 335 103 40 chr1 72476172 72476628 -124718804 - L2a LINE L2 -12 3414 2921 1 1137 674 319 135 22 chr1 72477027 72477479 -124717953 - MLT1D LTR MaLR -2 503 1 1 1137 2202 161 54 15 chr1 72477581 72477972 -124717460 + MTB_Mm LTR MaLR 1 406 -1 1 1137 311 324 62 14 chr1 72478058 72478202 -124717230 + MLT1A1 LTR MaLR 59 209 -199 1 1137 440 292 56 75 chr1 72478295 72478547 -124716885 - MER20B DNA MER1_type -5 778 532 1 1137 265 191 0 0 chr1 72478548 72478595 -124716837 + L1_Rod LINE L1 5793 5839 -8 1 1137 994 153 22 6 chr1 72478596 72478800 -124716632 + Lx7 LINE L1 6796 7000 -460 1 1137 250 300 162 44 chr1 72479410 72479546 -124715886 + RMER20A LTR ERVK 184 335 -181 1 1137 309 235 37 47 chr1 72480754 72480796 -124714636 + PB1D7 SINE Alu 7 112 -8 1 1137 454 138 0 0 chr1 72480796 72480861 -124714571 + ID_B1 SINE B4 152 216 -8 1 1137 272 211 0 13 chr1 72480890 72480967 -124714465 + GA-rich Low_complexity Low_complexity 2 77 0 1 1137 372 328 98 12 chr1 72481653 72481826 -124713606 - MER5A DNA MER1_type -1 188 1 1 1137 954 147 0 0 chr1 72481913 72482049 -124713383 - B1_Mus1 SINE Alu -12 136 1 1 1137 295 316 40 0 chr1 72482092 72482168 -124713264 + B4A SINE B4 22 100 -192 1 1137 25 0 0 0 chr1 72482195 72482220 -124713212 + AT_rich Low_complexity Low_complexity 1 25 0 1 142 6126 37 26 1 chr1 72482355 72483086 -124712346 - L1Md_F2 LINE L1 -12 6570 5822 1 1138 723 283 12 6 chr1 72483086 72483253 -124712179 + B4A SINE B4 123 290 -2 1 1138 241 299 54 45 chr1 72483458 72483570 -124711862 + MIRb SINE MIR 73 185 -83 1 1138 970 226 323 61 chr1 72483883 72484183 -124711249 - ORR1E LTR MaLR 0 379 1 1 1138 207 265 0 0 chr1 72485003 72485052 -124710380 + (ATGGTG)n Simple_repeat Simple_repeat 4 52 0 1 1138 352 279 83 37 chr1 72485052 72485268 -124710164 - MIRb SINE MIR -16 252 27 1 1138 231 290 29 172 chr1 72485457 72485661 -124709771 + MIRc SINE MIR 91 268 0 1 1138 195 42 0 0 chr1 72485699 72485723 -124709709 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1138 598 268 112 56 chr1 72485912 72486252 -124709180 + ORR1E LTR MaLR 1 359 0 1 1138 371 299 168 7 chr1 72487328 72487483 -124707949 - MIR3 SINE MIR -26 182 3 1 1138 25 31 0 0 chr1 72487554 72487586 -124707846 + AT_rich Low_complexity Low_complexity 1 32 0 1 1138 538 199 244 0 chr1 72487613 72487744 -124707688 - RSINE1 SINE B4 0 165 3 1 1138 200 360 80 54 chr1 72489507 72489783 -124705649 + L2c LINE L2 2916 3198 -189 1 1138 260 362 100 19 chr1 72490444 72490617 -124704815 + MIRc SINE MIR 1 185 -83 1 1138 946 291 17 83 chr1 72492736 72492793 -124702639 + B4 SINE B4 1 56 -236 1 1138 1338 84 5 40 chr1 72492793 72492991 -124702441 + B2_Mm1t SINE B2 1 191 -2 1 1138 946 291 17 83 chr1 72492991 72493233 -124702199 + B4 SINE B4 57 280 -12 1 1138 328 261 43 43 chr1 72494634 72494750 -124700682 - L2a LINE L2 -2 3424 3309 1 1138 906 147 0 0 chr1 72495584 72495713 -124699719 - B3 SINE B2 -86 130 2 1 1138 260 345 134 11 chr1 72496180 72496359 -124699073 + MIRb SINE MIR 61 261 -1 1 1138 303 320 0 13 chr1 72496363 72496439 -124698993 - Tigger7 DNA MER2_type -3 2488 2414 1 1138 851 316 50 8 chr1 72496433 72496691 -124698741 - Tigger7 DNA MER2_type -2195 296 28 1 1138 191 146 0 20 chr1 72497940 72497966 -124697466 + polypyrimidine Low_complexity Low_complexity 24 49 0 1 1138 396 0 0 0 chr1 72497966 72498010 -124697422 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1138 191 146 0 20 chr1 72498010 72498032 -124697400 + polypyrimidine Low_complexity Low_complexity 3 23 0 1 1138 207 0 0 0 chr1 72498035 72498058 -124697374 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1138 297 68 0 0 chr1 72498061 72498105 -124697327 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1138 482 298 60 0 chr1 72498405 72498556 -124696876 + MER5A1 DNA MER1_type 1 160 -6 1 1138 195 162 0 0 chr1 72498652 72498689 -124696743 + T-rich Low_complexity Low_complexity 4 40 0 1 1138 201 282 0 57 chr1 72498700 72498824 -124696608 + CT-rich Low_complexity Low_complexity 2 118 0 1 1138 708 106 0 19 chr1 72499890 72499996 -124695436 - B1_Mur4 SINE Alu 0 150 47 1 1138 243 194 0 0 chr1 72500000 72500036 -124695396 - B1_Mus1 SINE Alu -112 36 1 1 1138 216 0 0 0 chr1 72502136 72502160 -124693272 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1138 237 312 15 15 chr1 72502266 72502331 -124693101 + B4A SINE B4 21 85 -207 3 1138 465 281 102 41 chr1 72503019 72503264 -124692168 + MIRb SINE MIR 4 263 -5 4 1138 231 133 0 0 chr1 72503693 72503738 -124691694 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1138 229 277 112 10 chr1 72504011 72504110 -124691322 + MIR SINE MIR 12 126 -142 6 1138 203 281 55 48 chr1 72504178 72504324 -124691108 - L2a LINE L2 -115 3311 3165 7 1138 1281 258 34 50 chr1 72504326 72504706 -124690726 + MTEb LTR MaLR 1 374 -5 8 1138 1510 318 102 44 chr1 72504762 72505016 -124690416 - L2a LINE L2 -321 3105 2846 7 1138 477 0 0 0 chr1 72505016 72505069 -124690363 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1138 1510 314 109 51 chr1 72505069 72505841 -124689591 - L2a LINE L2 -574 2845 2017 7 1138 1029 146 166 5 chr1 72506657 72506850 -124688582 - URR1B DNA MER1_type 0 225 2 1 1138 212 200 22 0 chr1 72506903 72506948 -124688484 + CT-rich Low_complexity Low_complexity 3 48 0 1 1138 441 0 0 0 chr1 72507692 72507741 -124687691 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1138 193 280 0 0 chr1 72509740 72509790 -124685642 - MER5A DNA MER1_type 0 189 140 1 1138 257 282 73 12 chr1 72510007 72510105 -124685327 + MIR SINE MIR 31 141 -127 1 1138 418 187 26 7 chr1 72510108 72510259 -124685173 + CT-rich Low_complexity Low_complexity 2 155 0 1 1138 270 73 0 0 chr1 72510262 72510303 -124685129 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 1138 549 30 0 0 chr1 72510304 72510371 -124685061 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1138 724 141 93 8 chr1 72510371 72510500 -124684932 - B1_Mur4 SINE Alu -9 141 2 1 1138 187 79 53 0 chr1 72511249 72511287 -124684145 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1 1138 1070 167 120 0 chr1 72511575 72511767 -124683665 - URR1A DNA MER1_type -2 224 10 2 1138 975 131 0 0 chr1 72512152 72512312 -124683120 + (TCTCCC)n Simple_repeat Simple_repeat 4 163 0 2 1138 1142 82 0 0 chr1 72512371 72512518 -124682914 - B1_Mus1 SINE Alu 0 148 2 2 1138 230 301 0 46 chr1 72513468 72513555 -124681877 - L1M5 LINE L1 -477 5647 5565 2 1138 337 357 83 22 chr1 72514286 72514566 -124680866 - MLT1H2 LTR MaLR -188 361 40 2 1138 191 222 123 31 chr1 72514580 72514645 -124680787 + MIR SINE MIR 66 136 -72 2 1138 447 331 11 0 chr1 72515583 72515761 -124679671 + (CATG)n Simple_repeat Simple_repeat 1 180 0 2 1138 239 282 7 0 chr1 72515787 72515936 -124679496 + (CATG)n Simple_repeat Simple_repeat 4 153 0 2 1138 297 321 110 0 chr1 72516296 72516405 -124679027 + MIR SINE MIR 94 214 -48 2 1138 253 311 0 0 chr1 72517146 72517207 -124678225 + B4A SINE B4 85 145 -147 2 1138 520 267 0 0 chr1 72517156 72517257 -124678175 + PB1D10 SINE Alu 10 110 -7 2 1138 973 281 21 8 chr1 72517261 72517498 -124677934 + B4A SINE B4 53 292 0 3 1138 1170 247 12 1 chr1 72517656 72517920 -124677512 + Lx5 LINE L1 6737 6975 -75 3 1138 325 0 44 0 chr1 72517934 72517979 -124677453 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1138 1472 232 86 0 chr1 72518428 72518777 -124676655 + MTEa LTR MaLR 1 379 0 3 1138 262 355 9 26 chr1 72518816 72518929 -124676503 + MIR3 SINE MIR 95 205 -3 3 1138 206 232 18 18 chr1 72519167 72519224 -124676208 + GA-rich Low_complexity Low_complexity 2 58 0 3 1138 896 159 265 0 chr1 72520692 72520862 -124674570 - B3 SINE B2 -1 215 1 3 1138 308 278 65 0 chr1 72521164 72521281 -124674151 - MIRb SINE MIR -95 173 41 3 1138 414 0 0 0 chr1 72521424 72521470 -124673962 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1138 590 265 17 0 chr1 72522001 72522118 -124673314 - B4A SINE B4 -173 119 1 3 1138 791 325 148 0 chr1 72522118 72522423 -124673009 - MLT1H1 LTR MaLR -23 532 183 4 1138 695 108 8 0 chr1 72522587 72522707 -124672725 + (GA)n Simple_repeat Simple_repeat 1 121 0 4 1138 262 136 23 0 chr1 72522707 72522751 -124672681 + GA-rich Low_complexity Low_complexity 2 46 0 4 1138 446 269 66 51 chr1 72523533 72523670 -124671762 - B1F SINE Alu 0 149 11 4 1138 1404 174 59 21 chr1 72524097 72524385 -124671047 + RMER10B LTR ERVL 19 317 -81 4 1138 2796 70 3 0 chr1 72524512 72524871 -124670561 - L1_Mus1 LINE L1 0 6567 6208 4 1138 410 0 0 20 chr1 72525034 72525085 -124670347 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1138 50 31 0 0 chr1 72525874 72525938 -124669494 + AT_rich Low_complexity Low_complexity 1 64 0 4 1138 201 359 0 0 chr1 72526793 72526885 -124668547 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1138 382 18 36 0 chr1 72527236 72527291 -124668141 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1138 1736 209 46 3 chr1 72527292 72527637 -124667795 - ORR1B2 LTR MaLR -5 362 3 5 1138 294 357 18 60 chr1 72527684 72527851 -124667581 - B4A SINE B4 -18 274 115 5 1138 244 321 83 0 chr1 72527777 72527861 -124667571 - B1_Mur1 SINE Alu -39 110 20 5 1138 3024 129 112 4 chr1 72529798 72530318 -124665114 + RMER4B LTR ERVK 10 585 0 5 1138 838 214 149 10 chr1 72530655 72530943 -124664489 - Lx9 LINE L1 -4 7640 7313 5 1138 882 95 24 8 chr1 72530965 72531092 -124664340 - B1_Mus1 SINE Alu -18 130 2 5 1138 608 217 16 24 chr1 72531225 72531348 -124664084 + B1_Mur1 SINE Alu 28 149 0 5 1138 262 231 15 0 chr1 72531370 72531435 -124663997 - L1ME4a LINE L1 -94 6030 5965 5 1138 24 67 0 0 chr1 72531918 72531963 -124663469 + AT_rich Low_complexity Low_complexity 1 45 0 5 1138 481 235 0 0 chr1 72532292 72532390 -124663042 + ID_B1 SINE B4 119 216 -8 5 1138 243 0 0 0 chr1 72532403 72532430 -124663002 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 1138 762 11 0 32 chr1 72532431 72532526 -124662906 - B1_Mm SINE Alu 0 147 56 6 1138 306 0 0 0 chr1 72532698 72532732 -124662700 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1138 504 0 0 0 chr1 72532732 72532787 -124662645 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1138 350 229 7 2 chr1 72532800 72532874 -124662558 - RSINE1 SINE B4 -216 76 1 6 1138 3112 50 37 3 chr1 72532898 72533281 -124662151 + MTA_Mm LTR MaLR 1 396 0 6 1138 24 0 0 0 chr1 72533558 72533582 -124661850 + AT_rich Low_complexity Low_complexity 1 24 0 6 1138 639 236 41 82 chr1 72533586 72533757 -124661675 - RSINE1 SINE B4 0 165 2 6 1138 281 47 0 23 chr1 72533941 72533985 -124661447 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 6 1138 375 23 0 0 chr1 72535116 72535160 -124660272 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1138 1001 228 20 0 chr1 72535230 72535432 -124660000 + B3 SINE B2 2 207 -9 7 1138 501 17 0 0 chr1 72535432 72535490 -124659942 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 7 1138 685 298 17 6 chr1 72535753 72535932 -124659500 + U2 snRNA snRNA 3 183 -5 7 1138 904 186 71 41 chr1 72536133 72536329 -124659103 + B3 SINE B2 1 202 -14 7 1138 250 164 60 0 chr1 72537187 72537254 -124658178 + GA-rich Low_complexity Low_complexity 6 76 0 7 1138 260 260 25 49 chr1 72537842 72537923 -124657509 - MLT1A1 LTR MaLR -19 389 311 7 1138 261 0 0 0 chr1 72538302 72538331 -124657101 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1138 202 316 12 12 chr1 72538331 72538411 -124657021 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1138 424 289 84 23 chr1 72538475 72538606 -124656826 - B3 SINE B2 0 216 78 7 1138 2477 131 31 3 chr1 72538591 72538973 -124656459 + MTB_Mm LTR MaLR 15 407 0 7 1138 21 0 0 0 chr1 72539175 72539196 -124656236 + GC_rich Low_complexity Low_complexity 1 21 0 8 1138 200 329 63 29 chr1 72539520 72539636 -124655796 + MIRc SINE MIR 125 239 -29 8 1138 226 352 61 61 chr1 72539672 72539820 -124655612 + MT2B2 LTR ERVL 108 255 -329 8 1138 561 231 58 0 chr1 72539732 72539836 -124655596 + PB1D10 SINE Alu 6 115 -2 8 1138 297 0 0 0 chr1 72540075 72540108 -124655324 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1138 325 350 23 47 chr1 72540113 72540242 -124655190 - L3b LINE CR1 -92 390 265 8 1138 240 323 95 103 chr1 72540386 72540638 -124654794 - MER102a DNA MER1_type -80 250 1 8 1138 258 307 68 34 chr1 72540678 72540796 -124654636 - MIRc SINE MIR -63 205 84 8 1138 2127 147 86 24 chr1 72541272 72541643 -124653789 + ORR1B1 LTR MaLR 1 394 0 8 1138 691 186 123 8 chr1 72541704 72541834 -124653598 + B1_Mus2 SINE Alu 2 146 -1 8 1138 289 271 44 15 chr1 72541951 72542086 -124653346 + L1M5 LINE L1 3087 3225 -2921 9 1138 568 208 40 8 chr1 72542094 72542220 -124653212 + B1F1 SINE Alu 5 134 -15 9 1138 225 0 0 0 chr1 72542224 72542249 -124653183 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1138 792 231 29 12 chr1 72542305 72542476 -124652956 + Lx7 LINE L1 7006 7179 -517 9 1138 2972 218 88 73 chr1 72542481 72543346 -124652086 + RMER19B LTR ERVK 25 902 0 9 1138 670 217 84 59 chr1 72543347 72543780 -124651652 + Lx7 LINE L1 7175 7696 0 9 1138 21 36 0 0 chr1 72543780 72543808 -124651624 + AT_rich Low_complexity Low_complexity 1 28 0 9 1138 623 290 53 21 chr1 72543827 72544017 -124651415 + B3A SINE B2 3 198 0 9 1138 614 330 177 42 chr1 72544035 72544894 -124650538 + L1M5 LINE L1 3428 4402 -1744 9 1138 380 332 151 45 chr1 72544947 72545278 -124650154 + L1M5 LINE L1 4562 4927 -1219 9 1138 1823 132 59 13 chr1 72545351 72545658 -124649774 + ORR1A4 LTR MaLR 9 329 0 9 1138 258 246 16 16 chr1 72545771 72545833 -124649599 + Lx8 LINE L1 7165 7226 -247 9 1138 183 80 0 0 chr1 72545840 72545865 -124649567 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1138 541 295 6 19 chr1 72545887 72546046 -124649386 + RMER15 LTR ERVL 403 559 -16 1 1138 318 253 179 12 chr1 72546059 72546227 -124649205 + L1M5 LINE L1 4930 5125 -1021 9 1138 254 287 101 28 chr1 72546406 72546624 -124648808 + L1M5 LINE L1 5337 5565 -599 9 1138 357 315 116 46 chr1 72547069 72547242 -124648190 + MLT1E2 LTR MaLR 3 187 -440 1 1138 418 257 27 18 chr1 72547266 72547377 -124648055 + PB1D10 SINE Alu 1 112 -5 1 1138 586 118 45 45 chr1 72547420 72547597 -124647835 + GA-rich Low_complexity Low_complexity 3 179 0 1 1138 739 336 93 18 chr1 72547599 72547987 -124647445 + MLT1E2 LTR MaLR 207 623 -4 1 1138 228 279 24 48 chr1 72548017 72548100 -124647332 + MLT1E LTR MaLR 210 290 -363 1 1138 417 224 134 25 chr1 72548625 72548744 -124646688 + B1_Mur1 SINE Alu 9 140 -9 1 1138 642 132 28 33 chr1 72549270 72549451 -124645981 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1138 252 274 75 47 chr1 72549614 72549721 -124645711 + L1M5 LINE L1 5564 5673 -451 9 1138 289 359 140 23 chr1 72550374 72550588 -124644844 + LTR33A LTR ERVL 149 387 -133 1 1138 414 100 0 0 chr1 72553653 72553713 -124641719 + (CGTG)n Simple_repeat Simple_repeat 1 60 0 1 1138 549 300 172 25 chr1 72554597 72554881 -124640551 - MLT1A LTR MaLR 0 374 49 1 1138 589 74 32 0 chr1 72555234 72555329 -124640103 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 1 1138 287 217 83 0 chr1 72555527 72555587 -124639845 - ID_B1 SINE B4 -8 216 152 1 1138 241 236 49 98 chr1 72555587 72555640 -124639792 - B1F1 SINE Alu -33 101 1 1 1138 803 169 4 12 chr1 72556602 72556861 -124638571 + (TG)n Simple_repeat Simple_repeat 1 257 0 1 1138 221 119 0 23 chr1 72557214 72557257 -124638175 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1138 291 314 108 6 chr1 72557440 72557597 -124637835 - MER5B DNA MER1_type -4 174 2 1 1138 769 172 230 0 chr1 72558273 72558447 -124636985 + B3 SINE B2 2 215 -1 1 1138 209 114 29 0 chr1 72558475 72558510 -124636922 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1138 345 193 7 43 chr1 72558834 72558868 -124636564 + ORR1C1-int LTR MaLR 619 647 -862 1 1138 1001 45 0 8 chr1 72558868 72559001 -124636431 + B1_Mus1 SINE Alu 2 133 -15 1 1138 946 161 6 24 chr1 72559009 72559174 -124636258 + RMER1C Other Other 1036 1197 -145 1 1138 591 15 0 0 chr1 72559175 72559243 -124636189 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 1 1138 537 167 21 0 chr1 72559244 72559340 -124636092 + RMER1C Other Other 1229 1326 -16 1 1138 198 0 0 0 chr1 72559343 72559365 -124636067 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1138 360 0 0 0 chr1 72559365 72559404 -124636028 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1138 1896 150 85 23 chr1 72559783 72559945 -124635487 + ORR1C1 LTR MaLR 1 163 -215 1 1138 567 0 0 0 chr1 72559945 72560008 -124635424 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1138 1896 150 85 23 chr1 72560008 72560199 -124635233 + ORR1C1 LTR MaLR 164 376 -2 1 1138 371 260 90 7 chr1 72560743 72560898 -124634534 + (CATGC)n Simple_repeat Simple_repeat 1 168 0 1 1138 663 136 0 0 chr1 72565415 72565525 -124629907 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 1138 623 297 0 27 chr1 72565528 72565715 -124629717 - B3A SINE B2 -16 182 1 1 1138 599 272 88 23 chr1 72565908 72566171 -124629261 - L1MC4a LINE L1 0 7882 7603 1 1138 436 150 50 0 chr1 72566183 72566263 -124629169 + B1_Mur1 SINE Alu 33 116 -33 1 1138 1511 247 91 68 chr1 72566380 72566910 -124628522 + Lx8 LINE L1 6932 7473 0 1 1138 285 148 66 0 chr1 72567007 72567068 -124628364 - B3 SINE B2 -2 214 150 1 1138 885 219 30 25 chr1 72567134 72567335 -124628097 - B3 SINE B2 -14 202 1 1 1138 216 268 143 24 chr1 72567781 72567865 -124627567 - MIRb SINE MIR -86 182 89 1 1138 708 35 0 0 chr1 72568115 72568202 -124627230 + (TCC)n Simple_repeat Simple_repeat 1 87 0 1 1138 331 203 14 0 chr1 72568351 72568420 -124627012 - URR1B DNA MER1_type -155 70 1 1 1138 216 341 0 0 chr1 72568514 72568602 -124626830 - MIRb SINE MIR -10 258 171 1 1138 393 75 0 0 chr1 72568681 72568734 -124626698 + (CGTG)n Simple_repeat Simple_repeat 1 53 0 1 1138 868 246 88 104 chr1 72569243 72569559 -124625873 + MTEa LTR MaLR 1 318 -61 1 1138 1110 182 23 32 chr1 72569559 72569775 -124625657 - B3 SINE B2 0 216 3 1 1138 868 246 88 104 chr1 72569775 72569843 -124625589 + MTEa LTR MaLR 319 379 0 1 1138 264 303 26 58 chr1 72569885 72570039 -124625393 - MER113 DNA MER1_type -54 467 319 1 1138 357 24 0 0 chr1 72570091 72570133 -124625299 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1138 254 122 0 0 chr1 72570138 72570179 -124625253 + L1MC2 LINE L1 5841 5881 -452 1 1138 395 265 154 53 chr1 72570172 72570419 -124625013 + L1MC2 LINE L1 6039 6310 -34 1 1138 622 283 39 28 chr1 72570423 72570677 -124624755 - MER113 DNA MER1_type -188 333 77 1 1138 678 178 108 0 chr1 72572080 72572209 -124623223 + B1_Mur1 SINE Alu 6 148 -1 1 1138 457 228 181 10 chr1 72572770 72572907 -124622525 + B3A SINE B2 5 160 -38 1 1138 441 0 0 0 chr1 72572907 72572956 -124622476 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1138 247 248 193 102 chr1 72572956 72572984 -124622448 + B2_Mm2 SINE B2 158 185 -10 1 1138 678 209 104 0 chr1 72572995 72573129 -124622303 + B1_Mur2 SINE Alu 1 148 -1 1 1138 3030 280 52 11 chr1 72573130 72574023 -124621409 + Lx8 LINE L1 6185 7113 -360 1 1138 393 233 64 52 chr1 72574053 72574225 -124621207 + Lx8 LINE L1 7300 7473 0 1 1138 1231 125 124 10 chr1 72574769 72574971 -124620461 + URR1A DNA MER1_type 2 226 0 1 1138 468 0 0 0 chr1 72575091 72575143 -124620289 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1138 1153 62 0 14 chr1 72575388 72575535 -124619897 - B1_Mus1 SINE Alu -1 147 3 1 1138 410 312 178 18 chr1 72576368 72576587 -124618845 + MER115 DNA Tip100 9 262 -431 1 1138 448 324 29 5 chr1 72576692 72576897 -124618535 + MER115 DNA Tip100 483 692 -1 1 1138 464 111 12 0 chr1 72578920 72579001 -124616431 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 1138 234 91 0 0 chr1 72580495 72580528 -124614904 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1138 366 303 17 28 chr1 72583793 72583973 -124611459 + GA-rich Low_complexity Low_complexity 3 180 0 1 1138 385 138 12 12 chr1 72584355 72584436 -124610996 + CT-rich Low_complexity Low_complexity 2 82 0 1 1138 538 27 26 13 chr1 72585250 72585326 -124610106 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 1 1138 382 321 38 19 chr1 72585390 72585549 -124609883 + RSINE1 SINE B4 4 165 0 1 1138 186 370 0 21 chr1 72586293 72586387 -124609045 - L2b LINE L2 -7 3368 3277 1 1138 412 353 7 26 chr1 72587479 72587633 -124607799 + RSINE1 SINE B4 2 152 -13 1 1138 878 245 14 14 chr1 72587691 72587898 -124607534 + B3 SINE B2 2 208 -8 1 1138 544 215 28 0 chr1 72587942 72588049 -124607383 + PB1D10 SINE Alu 3 112 -5 1 1138 228 67 0 0 chr1 72588051 72588081 -124607351 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 1 1138 396 279 41 35 chr1 72588186 72588331 -124607101 - B1F SINE Alu -3 146 1 1 1138 41744 12 1 6 chr1 72588662 72595000 -124600432 - L1Md_A LINE L1 0 6582 281 1 1138 567 60 0 24 chr1 72595066 72595144 -124600288 - MTB LTR MaLR -135 265 189 1 1138 603 0 0 0 chr1 72595144 72595211 -124600221 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 1 1138 1063 110 17 0 chr1 72595218 72595391 -124600041 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 1138 1405 52 35 0 chr1 72595391 72595564 -124599868 - B2_Mm2 SINE B2 -16 179 1 1 1138 384 274 80 124 chr1 72595633 72595879 -124599553 + MLT1F2 LTR MaLR 255 491 -69 1 1138 183 184 0 0 chr1 72596179 72596217 -124599215 + MIRm SINE MIR 234 271 -5 1 1138 188 312 70 25 chr1 72596908 72597066 -124598366 - L2a LINE L2 -66 3360 3196 1 1138 293 102 17 0 chr1 72598752 72598811 -124596621 + (TTTTTG)n Simple_repeat Simple_repeat 3 62 0 1 1138 381 328 86 5 chr1 72599076 72599263 -124596169 + MIRb SINE MIR 61 262 -6 1 1138 1005 133 0 0 chr1 72599722 72600140 -124595292 + (TG)n Simple_repeat Simple_repeat 1 418 0 1 1138 258 95 0 0 chr1 72600381 72600423 -124595009 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1138 194 324 29 14 chr1 72601456 72601525 -124593907 + MIRm SINE MIR 2 71 -205 1 1138 1244 111 0 16 chr1 72601596 72601780 -124593652 - B2_Mm2 SINE B2 -14 181 1 1 1138 299 290 139 17 chr1 72602105 72602277 -124593155 + MIRb SINE MIR 75 267 -1 1 1138 1221 28 14 0 chr1 72602327 72602472 -124592960 + B1_Mus1 SINE Alu 2 148 0 1 1138 228 35 0 0 chr1 72602476 72602505 -124592927 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 1 1138 3489 169 79 6 chr1 72602664 72602781 -124592651 - RMER1A Other Other -9 1021 912 1 1138 189 107 0 0 chr1 72602781 72602809 -124592623 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1138 3489 158 83 5 chr1 72602809 72603332 -124592100 - RMER1A Other Other -119 911 346 1 1138 347 301 105 80 chr1 72603604 72603842 -124591590 - LTR33 LTR ERVL -213 302 59 1 1138 262 139 0 0 chr1 72604401 72604444 -124590988 + B1_Mur4 SINE Alu 6 48 -102 1 1138 399 211 1 4 chr1 72604433 72604515 -124590917 - ORR1D1 LTR MaLR -276 83 1 1 1138 247 293 113 0 chr1 72604907 72605056 -124590376 - MIR3 SINE MIR -28 180 20 1 1138 261 0 0 0 chr1 72606428 72606457 -124588975 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1 1138 423 0 0 0 chr1 72607799 72607846 -124587586 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1138 418 250 0 10 chr1 72607969 72608066 -124587366 + MTEb LTR MaLR 278 373 -6 1 1138 1127 170 86 83 chr1 72608286 72608332 -124587100 + RLTR15 LTR ERVK 1 47 -312 1 1138 227 54 0 26 chr1 72608332 72608370 -124587062 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1138 982 84 20 53 chr1 72608372 72608523 -124586909 + B1_Mus2 SINE Alu 2 147 0 1 1138 1127 170 86 83 chr1 72608523 72608812 -124586620 + RLTR15 LTR ERVK 48 340 -19 1 1138 865 164 6 11 chr1 72608941 72609120 -124586312 + CT-rich Low_complexity Low_complexity 3 180 0 1 1138 444 195 11 0 chr1 72609123 72609210 -124586222 - PB1D9 SINE Alu -21 99 12 1 1138 878 324 88 15 chr1 72609358 72609687 -124585745 - MLT1H1 LTR MaLR -3 552 200 1 1138 949 169 198 0 chr1 72609981 72610158 -124585274 + B3 SINE B2 1 212 -4 1 1138 979 229 43 14 chr1 72610188 72610396 -124585036 + B3 SINE B2 3 216 0 1 1138 941 61 0 22 chr1 72610408 72610535 -124584897 + B1_Mm SINE Alu 13 139 -8 1 1138 205 29 29 29 chr1 72610535 72610570 -124584862 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1138 28 0 0 0 chr1 72610652 72610680 -124584752 + AT_rich Low_complexity Low_complexity 1 28 0 2 1138 1215 121 60 0 chr1 72610920 72611102 -124584330 - B2_Mm2 SINE B2 0 195 3 2 1138 858 230 75 0 chr1 72611312 72611512 -124583920 + B3 SINE B2 2 216 0 2 1138 1348 98 16 0 chr1 72611858 72612041 -124583391 + B2_Mm2 SINE B2 4 189 -6 2 1138 1109 77 0 0 chr1 72612134 72612277 -124583155 + B2_Mm2 SINE B2 1 143 -52 2 1138 180 0 0 0 chr1 72612308 72612328 -124583104 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1138 806 184 0 0 chr1 72612328 72612464 -124582968 - B1_Mur2 SINE Alu -13 136 1 2 1138 588 159 230 0 chr1 72612500 72612613 -124582819 - B1_Mur4 SINE Alu -10 140 2 2 1138 271 302 156 33 chr1 72612619 72612862 -124582570 + L1M5 LINE L1 5613 5885 -239 2 1138 1347 235 85 14 chr1 72613185 72613539 -124581893 + MTE2b LTR MaLR 1 379 0 2 1139 228 329 66 0 chr1 72614212 72614288 -124581144 - L2a LINE L2 -5 3421 3341 2 1139 1233 42 0 0 chr1 72614307 72614450 -124580982 + B1_Mus1 SINE Alu 1 143 -5 2 1139 180 0 0 0 chr1 72614452 72614472 -124580960 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1139 290 362 28 71 chr1 72614490 72614902 -124580530 - L2a LINE L2 -154 3272 2876 2 1139 1128 299 49 49 chr1 72614975 72615400 -124580032 - MLT1F LTR MaLR -123 425 1 2 1139 291 292 96 78 chr1 72615843 72616010 -124579422 + ORR1E LTR MaLR 1 170 -189 2 1139 1209 282 27 8 chr1 72616193 72616565 -124578867 + MTEb LTR MaLR 1 379 0 2 1139 832 176 56 0 chr1 72616675 72616817 -124578615 + B1_Mur4 SINE Alu 1 150 0 2 1139 622 213 58 32 chr1 72617463 72617618 -124577814 + RSINE1 SINE B4 3 161 -4 2 1139 229 294 0 14 chr1 72617693 72617762 -124577670 + (TATG)n Simple_repeat Simple_repeat 1 68 0 2 1139 821 323 38 31 chr1 72617772 72618060 -124577372 - B4A SINE B4 0 292 3 2 1139 619 306 54 9 chr1 72618126 72618347 -124577085 + MER20B DNA MER1_type 359 589 -194 2 1139 257 242 91 0 chr1 72619815 72619881 -124575551 + ID SINE ID 10 81 -143 2 1139 24 53 0 0 chr1 72619886 72619924 -124575508 + AT_rich Low_complexity Low_complexity 1 38 0 2 1139 207 0 0 0 chr1 72619976 72619999 -124575433 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1139 1074 44 0 68 chr1 72620000 72620147 -124575285 - B1_Mm SINE Alu -10 137 1 2 1139 297 0 0 0 chr1 72621033 72621066 -124574366 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1139 216 253 37 74 chr1 72621425 72621506 -124573926 + B1_Mus2 SINE Alu 1 78 -69 2 1139 981 141 166 5 chr1 72621540 72621733 -124573699 + URR1B DNA MER1_type 1 224 -1 2 1139 259 284 0 0 chr1 72624853 72624920 -124570512 + GA-rich Low_complexity Low_complexity 4 70 0 2 1139 1442 242 26 42 chr1 72624999 72625382 -124570050 + MTEa LTR MaLR 1 377 -2 2 1139 320 250 69 0 chr1 72625459 72625531 -124569901 + ID4_ SINE ID 1 77 -6 2 1139 407 201 71 43 chr1 72625574 72625857 -124569575 + RMER17C LTR ERVK 10 473 -416 2 1139 230 214 0 0 chr1 72625944 72625986 -124569446 + C-rich Low_complexity Low_complexity 1 42 0 2 1139 705 264 85 94 chr1 72626047 72626365 -124569067 - ORR1E LTR MaLR -44 315 1 2 1139 307 221 24 72 chr1 72626505 72626588 -124568844 + B3A SINE B2 2 80 -118 2 1139 432 0 0 0 chr1 72626596 72626644 -124568788 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1139 2062 148 45 6 chr1 72626644 72626997 -124568435 + ORR1B2 LTR MaLR 1 367 0 2 1139 324 0 0 0 chr1 72627010 72627046 -124568386 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1139 232 250 0 0 chr1 72627064 72627108 -124568324 + polypurine Low_complexity Low_complexity 2 45 0 2 1139 225 0 0 0 chr1 72627279 72627304 -124568128 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1139 567 185 9 9 chr1 72627309 72627418 -124568014 - PB1D9 SINE Alu -10 110 2 2 1139 274 243 8 172 chr1 72627418 72627468 -124567964 - MT2B LTR ERVL -445 156 129 2 1139 359 196 147 64 chr1 72627495 72627604 -124567828 + PB1D10 SINE Alu 5 122 -5 2 1139 554 226 146 43 chr1 72628346 72628531 -124566901 - RMER21B LTR ERV1 -275 567 364 2 1139 624 161 56 16 chr1 72628594 72628720 -124566712 - RMER21B LTR ERV1 -711 131 1 2 1139 192 161 0 0 chr1 72629108 72629139 -124566293 + MIRc SINE MIR 124 154 -114 2 1139 293 196 167 56 chr1 72629141 72629249 -124566183 + PB1D9 SINE Alu 1 120 0 2 1139 294 191 284 11 chr1 72629268 72629363 -124566069 + ID_B1 SINE B4 91 211 -13 2 1139 2602 126 32 48 chr1 72630530 72631225 -124564207 - RMER6A LTR ERVK 0 756 108 2 1139 22 0 0 0 chr1 72632087 72632109 -124563323 + AT_rich Low_complexity Low_complexity 1 22 0 2 1139 319 328 90 0 chr1 72633756 72633878 -124561554 - MIRb SINE MIR -109 159 27 2 1139 436 270 95 0 chr1 72634392 72634518 -124560914 - MLT1B LTR MaLR -9 381 244 2 1139 1055 167 41 126 chr1 72634546 72634654 -124560778 - URR1B DNA MER1_type 0 225 127 2 1139 1311 102 11 16 chr1 72634654 72634843 -124560589 - B2_Mm2 SINE B2 -7 188 1 2 1139 1055 167 41 126 chr1 72634843 72634980 -124560452 - URR1B DNA MER1_type -99 126 1 2 1139 357 188 0 0 chr1 72635030 72635110 -124560322 + CT-rich Low_complexity Low_complexity 1 80 0 2 1139 447 261 128 21 chr1 72635157 72635298 -124560134 - MLT1B LTR MaLR -234 156 1 2 1139 853 118 64 36 chr1 72635759 72635899 -124559533 - B1_Mur3 SINE Alu 0 149 6 2 1139 561 260 25 193 chr1 72635899 72636002 -124559430 - ID_B1 SINE B4 0 224 23 2 1139 230 338 12 0 chr1 72636106 72636186 -124559246 - ID4_ SINE ID 0 83 3 2 1139 401 161 11 0 chr1 72637250 72637337 -124558095 + CT-rich Low_complexity Low_complexity 2 89 0 2 1139 405 262 58 0 chr1 72637349 72637452 -124557980 - PB1 SINE Alu -16 111 3 2 1139 192 270 12 75 chr1 72638231 72638311 -124557121 - MER5A DNA MER1_type -98 91 17 2 1139 731 186 0 0 chr1 72639382 72639495 -124555937 + ID_B1 SINE B4 102 214 -10 2 1139 234 62 0 0 chr1 72640658 72640690 -124554742 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1139 231 389 64 59 chr1 72640703 72640785 -124554647 - B3 SINE B2 -13 203 1 2 1139 490 280 33 17 chr1 72640785 72640905 -124554527 - RSINE1 SINE B4 -42 123 2 2 1139 339 25 0 0 chr1 72641330 72641370 -124554062 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1139 464 298 103 65 chr1 72641388 72641650 -124553782 - B4A SINE B4 -11 281 10 2 1139 546 191 0 0 chr1 72648501 72648627 -124546805 + (CA)n Simple_repeat Simple_repeat 2 127 0 2 1139 501 205 26 9 chr1 72648959 72649072 -124546360 + PB1D9 SINE Alu 5 119 -1 2 1139 4105 70 11 0 chr1 72649695 72650221 -124545211 + L1Md_F2 LINE L1 6048 6579 -3 2 1139 293 297 98 35 chr1 72650521 72650664 -124544768 - MER20 DNA MER1_type -50 169 18 2 1139 341 304 26 35 chr1 72651023 72651139 -124544293 - ID_B1 SINE B4 -33 191 77 2 1139 401 289 0 58 chr1 72651132 72651253 -124544179 - PB1D10 SINE Alu 0 117 4 2 1139 629 286 48 37 chr1 72651253 72651289 -124544143 - ID SINE ID -138 86 52 2 1139 320 111 19 0 chr1 72651289 72651343 -124544089 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1139 629 286 48 37 chr1 72651343 72651388 -124544044 - ID SINE ID -173 51 3 2 1139 1054 168 61 0 chr1 72651973 72652169 -124543263 - B3 SINE B2 -5 211 4 2 1139 526 215 28 0 chr1 72652662 72652769 -124542663 - PB1D10 SINE Alu -7 110 1 2 1139 514 213 216 35 chr1 72653925 72654095 -124541337 + B3 SINE B2 7 193 -5 2 1139 510 135 248 18 chr1 72654510 72654623 -124540809 + B1_Mus2 SINE Alu 8 146 -1 2 1139 22 0 0 0 chr1 72655633 72655655 -124539777 + AT_rich Low_complexity Low_complexity 1 22 0 2 1139 33 0 0 0 chr1 72656126 72656159 -124539273 + AT_rich Low_complexity Low_complexity 1 33 0 2 1139 555 211 132 26 chr1 72656205 72656356 -124539076 + B4A SINE B4 119 285 -7 2 1139 192 196 0 61 chr1 72656633 72656698 -124538734 - L2c LINE L2 -17 3370 3302 2 1139 1347 231 184 71 chr1 72656707 72656773 -124538659 - MT2A LTR ERVL 0 533 465 2 1139 285 51 0 0 chr1 72656773 72656812 -124538620 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 1139 1347 231 184 71 chr1 72656812 72657224 -124538208 - MT2A LTR ERVL -69 464 1 2 1139 405 304 29 11 chr1 72657471 72657640 -124537792 + B3A SINE B2 2 176 -19 2 1139 229 254 169 0 chr1 72659948 72660007 -124535425 - tRNA-Ala-GCA tRNA tRNA -6 69 1 2 1139 244 264 19 0 chr1 72659959 72660012 -124535420 - ID4 SINE ID -28 55 2 2 1139 452 252 68 0 chr1 72660021 72660124 -124535308 - PB1D9 SINE Alu -9 111 2 2 1139 494 174 229 0 chr1 72660378 72660487 -124534945 + B1_Mur4 SINE Alu 9 142 -8 2 1139 242 116 23 0 chr1 72660489 72660532 -124534900 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1139 256 188 219 0 chr1 72661762 72661826 -124533606 + ID4_ SINE ID 3 80 -3 2 1139 902 276 0 0 chr1 72662465 72662679 -124532753 - B3 SINE B2 0 216 3 2 1139 946 197 80 10 chr1 72662696 72662896 -124532536 - B3 SINE B2 0 216 3 2 1139 1017 257 76 8 chr1 72663221 72663484 -124531948 + B4A SINE B4 9 289 -3 2 1139 805 259 39 14 chr1 72664956 72665164 -124530268 + B3 SINE B2 4 216 0 2 1139 1210 61 0 0 chr1 72665183 72665331 -124530101 + B1_Mus1 SINE Alu 1 148 0 2 1139 1549 17 0 0 chr1 72665459 72665636 -124529796 + RLTR13B3 LTR ERVK 1 177 -752 2 1139 3704 27 29 0 chr1 72665636 72666078 -124529354 + RLTR13B3 LTR ERVK 475 929 0 2 1139 313 308 0 0 chr1 72667333 72667411 -124528021 - ID4_ SINE ID -4 79 2 2 1139 352 276 96 7 chr1 72667420 72667555 -124527877 - B1F1 SINE Alu 0 149 3 2 1139 648 221 88 31 chr1 72667576 72667735 -124527697 - B3A SINE B2 -30 168 1 2 1139 1340 200 214 79 chr1 72667834 72668302 -124527130 - MT2A LTR ERVL 0 533 3 3 1139 3722 54 21 2 chr1 72668763 72669229 -124526203 - MT2C_Mm LTR ERVL 0 475 1 3 1139 316 215 36 27 chr1 72669428 72669538 -124525894 - L1M5 LINE L1 -791 5355 5245 3 1139 332 299 9 18 chr1 72670016 72670125 -124525307 - PB1D10 SINE Alu -9 108 1 3 1139 320 217 0 0 chr1 72670442 72670502 -124524930 - RSINE1 SINE B4 -93 72 13 3 1139 3861 40 0 4 chr1 72670631 72671103 -124524329 - L1Md_F2 LINE L1 0 6582 6113 3 1139 339 267 113 119 chr1 72671392 72671702 -124523730 - L1ME1 LINE L1 -126 6053 5746 3 1139 1223 103 34 0 chr1 72671740 72671915 -124523517 + B2_Mm2 SINE B2 1 181 -14 3 1139 21 36 0 0 chr1 72672023 72672051 -124523381 + AT_rich Low_complexity Low_complexity 1 28 0 3 1139 321 285 32 16 chr1 72672115 72672240 -124523192 + L1MD2 LINE L1 5598 5724 -635 3 1139 203 286 0 0 chr1 72672484 72672540 -124522892 + G-rich Low_complexity Low_complexity 1 56 0 3 1139 256 314 64 25 chr1 72672696 72672853 -124522579 + L1MD2 LINE L1 6140 6302 -57 3 1139 1177 141 85 5 chr1 72673305 72673504 -124521928 + B3 SINE B2 2 216 0 3 1139 777 203 153 6 chr1 72674183 72674366 -124521066 - B3 SINE B2 -6 210 1 3 1139 387 0 0 0 chr1 72675160 72675203 -124520229 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1139 267 323 0 0 chr1 72675212 72675274 -124520158 - ID4 SINE ID -7 76 15 3 1139 459 256 21 42 chr1 72675294 72675437 -124519995 - ID_B1 SINE B4 -1 223 84 3 1139 444 157 0 11 chr1 72677091 72677181 -124518251 - Lx2 LINE L1 -2 6995 6907 3 1139 399 259 54 36 chr1 72677193 72677305 -124518127 - PB1D10 SINE Alu -2 115 2 3 1139 1993 110 146 3 chr1 72677338 72677674 -124517758 - ORR1B1 LTR MaLR -8 386 3 3 1139 697 278 16 64 chr1 72678463 72678651 -124516781 + B3A SINE B2 10 188 -10 3 1139 226 288 15 15 chr1 72680228 72680295 -124515137 - MER33 DNA MER1_type 0 324 258 3 1139 427 237 65 41 chr1 72680356 72680479 -124514953 - ID_B1 SINE B4 -7 217 92 3 1139 1186 181 68 37 chr1 72680744 72681066 -124514366 - RLTR15 LTR ERVK 0 359 28 3 1139 22 0 0 0 chr1 72681076 72681098 -124514334 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 180 308 38 25 chr1 72681389 72681469 -124513963 + L4 LINE RTE 285 365 -1664 3 1139 304 183 50 13 chr1 72681553 72681646 -124513786 - L1M2 LINE L1 -1162 4984 4886 3 1139 268 293 93 42 chr1 72682878 72683143 -124512289 + RLTR12B LTR ERVK 185 472 -56 3 1139 1231 76 47 0 chr1 72683551 72683722 -124511710 + B2_Mm1t SINE B2 1 179 -14 3 1139 312 281 0 46 chr1 72683952 72684040 -124511392 + MIRc SINE MIR 61 144 -124 3 1139 181 237 183 17 chr1 72684162 72684222 -124511210 - L2b LINE L2 -37 3338 3269 3 1139 1383 112 56 0 chr1 72684448 72684662 -124510770 + RLTR19A LTR ERVK 9 234 -262 3 1139 797 52 157 0 chr1 72684663 72684778 -124510654 + B2_Mm2 SINE B2 2 134 -61 3 1139 333 0 0 0 chr1 72684778 72684815 -124510617 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1139 258 337 85 11 chr1 72684823 72684961 -124510471 + MIRb SINE MIR 29 173 -95 3 1139 365 381 76 0 chr1 72684952 72685162 -124510270 - MIR SINE MIR -22 240 15 3 1139 4159 110 89 8 chr1 72685224 72685885 -124509547 + RLTR19B LTR ERVK 1 715 0 3 1139 736 191 28 7 chr1 72686313 72686455 -124508977 - B1_Mur4 SINE Alu -5 145 1 3 1139 254 246 0 16 chr1 72686496 72686558 -124508874 + B1_Mus2 SINE Alu 66 126 -21 3 1139 205 182 0 0 chr1 72686559 72686603 -124508829 + A-rich Low_complexity Low_complexity 1 44 0 3 1139 1198 36 0 0 chr1 72686604 72686744 -124508688 + B1_Mus1 SINE Alu 1 140 -8 3 1139 250 171 41 41 chr1 72686934 72687007 -124508425 - B3 SINE B2 0 216 144 3 1139 864 210 44 20 chr1 72687096 72687300 -124508132 - URR1B DNA MER1_type 0 225 17 3 1139 246 298 28 138 chr1 72688348 72688457 -124506975 - PB1D7 SINE Alu -3 117 21 3 1139 947 247 33 22 chr1 72688592 72688865 -124506567 + Lx7 LINE L1 7003 7278 -418 3 1139 527 318 33 26 chr1 72690046 72690198 -124505234 - B3A SINE B2 -45 153 1 3 1139 461 325 35 11 chr1 72690345 72690519 -124504913 + B3A SINE B2 18 195 -3 3 1139 632 272 33 39 chr1 72690768 72690921 -124504511 - RSINE1 SINE B4 -8 157 6 3 1139 1400 221 103 16 chr1 72691058 72691435 -124503997 + MTD LTR MaLR 1 410 -9 3 1139 1537 161 145 84 chr1 72691772 72692131 -124503301 + ORR1B1 LTR MaLR 6 386 -8 3 1139 2680 103 32 2 chr1 72692235 72692644 -124502788 + BGLII LTR ERVK 1 421 0 3 1139 23 33 0 0 chr1 72692652 72692682 -124502750 + AT_rich Low_complexity Low_complexity 1 30 0 3 1139 201 39 0 0 chr1 72692937 72692963 -124502469 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1139 22 0 0 0 chr1 72693212 72693234 -124502198 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 1435 107 22 4 chr1 72693328 72693554 -124501878 - Lx LINE L1 0 6654 6425 3 1139 1177 62 7 0 chr1 72693828 72693974 -124501458 + B1_Mus1 SINE Alu 1 147 -1 3 1139 438 69 0 0 chr1 72693977 72694035 -124501397 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1139 1215 55 0 0 chr1 72694162 72694308 -124501124 - B1_Mus1 SINE Alu -2 146 1 3 1139 389 350 88 0 chr1 72694423 72694663 -124500769 + Lx8 LINE L1 6964 7224 -249 3 1139 490 280 45 39 chr1 72694770 72694926 -124500506 + B3A SINE B2 26 182 -16 3 1139 786 179 7 20 chr1 72695018 72695166 -124500266 + B1_Mm SINE Alu 1 146 -1 3 1139 204 97 0 0 chr1 72695169 72695200 -124500232 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 1139 250 308 0 0 chr1 72695591 72695656 -124499776 - U6 snRNA snRNA -1 106 42 3 1139 374 275 0 0 chr1 72695651 72695731 -124499701 - B1F SINE Alu -55 94 15 3 1139 213 108 0 0 chr1 72695794 72695831 -124499601 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 3 1139 441 0 0 0 chr1 72696085 72696134 -124499298 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1139 414 226 83 0 chr1 72696157 72696241 -124499191 - B3A SINE B2 -102 96 6 3 1139 669 25 0 0 chr1 72696456 72696535 -124498897 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1139 1125 49 7 0 chr1 72696535 72696678 -124498754 - B1_Mus2 SINE Alu -3 144 1 3 1139 209 254 30 60 chr1 72698023 72698090 -124497342 + MIRc SINE MIR 136 200 -68 3 1139 8609 96 11 12 chr1 72699637 72701149 -124494283 + Lx3B LINE L1 5410 6914 -59 3 1139 615 51 0 0 chr1 72701162 72701241 -124494191 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1139 22 0 0 0 chr1 72701394 72701416 -124494016 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 3415 55 0 44 chr1 72701558 72702011 -124493421 + L1_Mus2 LINE L1 6134 6566 0 3 1139 1023 78 0 0 chr1 72703007 72703136 -124492296 + B1_Mus2 SINE Alu 2 130 -17 3 1139 285 29 0 0 chr1 72703139 72703173 -124492259 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1139 1088 134 32 5 chr1 72703271 72703459 -124491973 + RLTR1B LTR ERV1 218 410 -102 3 1139 476 205 0 0 chr1 72703472 72703555 -124491877 + RLTR1B LTR ERV1 354 436 -76 3 1139 207 160 0 39 chr1 72703773 72703825 -124491607 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1139 362 21 0 21 chr1 72704023 72704071 -124491361 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 3 1139 189 0 0 0 chr1 72704078 72704099 -124491333 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1139 338 301 86 19 chr1 72704154 72704259 -124491173 - B3A SINE B2 -86 112 1 3 1139 23 54 0 0 chr1 72706019 72706056 -124489376 + AT_rich Low_complexity Low_complexity 1 37 0 3 1139 209 209 23 0 chr1 72706143 72706186 -124489246 + CT-rich Low_complexity Low_complexity 3 46 0 3 1139 1024 75 0 0 chr1 72706186 72706320 -124489112 - B1_Mm SINE Alu 0 147 14 3 1139 210 37 0 0 chr1 72706703 72706730 -124488702 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1139 522 46 0 0 chr1 72706730 72706794 -124488638 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1139 462 283 94 0 chr1 72706800 72706906 -124488526 - B1_Mur1 SINE Alu -33 116 1 3 1139 682 294 65 5 chr1 72706932 72707117 -124488315 + RLTR18B LTR ERVK 5 200 -312 3 1139 961 322 56 40 chr1 72707108 72707267 -124488165 + RLTR18B LTR ERVK 111 279 -233 3 1139 754 122 252 0 chr1 72707267 72707414 -124488018 - B2_Mm1a SINE B2 -8 185 2 3 1139 961 322 56 40 chr1 72707414 72707649 -124487783 + RLTR18B LTR ERVK 280 511 -1 3 1139 252 282 14 14 chr1 72708097 72708169 -124487263 + MT2B LTR ERVL 169 240 -361 3 1139 386 170 84 0 chr1 72708109 72708191 -124487241 + B1_Mus1 SINE Alu 18 107 -13 3 1139 414 0 0 0 chr1 72708191 72708237 -124487195 + (TAA)n Simple_repeat Simple_repeat 1 46 0 3 1139 28 0 0 0 chr1 72708484 72708512 -124486920 + AT_rich Low_complexity Low_complexity 1 28 0 3 1139 529 265 187 0 chr1 72708615 72708781 -124486651 - B3A SINE B2 -1 197 1 3 1139 474 117 202 0 chr1 72709029 72709123 -124486309 + L1VL2 LINE L1 290 402 -5933 3 1139 5064 78 6 0 chr1 72709126 72710332 -124485100 + L1VL2 LINE L1 300 1512 -2103 3 1139 3067 92 14 0 chr1 72710336 72710826 -124484606 + L1VL2 LINE L1 2492 2988 -627 3 1139 23 54 0 0 chr1 72711018 72711055 -124484377 + AT_rich Low_complexity Low_complexity 1 37 0 3 1139 302 302 102 59 chr1 72712239 72712475 -124482957 + L1M5 LINE L1 2304 2549 -3666 3 1139 337 217 205 0 chr1 72713468 72713551 -124481881 - B1F1 SINE Alu -46 103 4 3 1139 257 37 35 53 chr1 72713697 72713754 -124481678 + (TATAA)n Simple_repeat Simple_repeat 1 56 0 3 1139 248 309 82 35 chr1 72713830 72714001 -124481431 - MER3 DNA MER1_type -30 179 1 4 1139 1203 249 13 112 chr1 72714223 72714598 -124480834 + MTE2a LTR MaLR 20 357 -22 4 1139 1282 247 41 9 chr1 72714869 72715208 -124480224 + Lx7 LINE L1 6657 7006 -690 4 1139 588 239 73 24 chr1 72715213 72715419 -124480013 + Lx7 LINE L1 7167 7382 -314 4 1139 182 37 0 36 chr1 72715479 72715507 -124479925 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1139 5573 38 1 5 chr1 72715637 72716307 -124479125 + L1Md_F2 LINE L1 5914 6581 -1 4 1139 24 32 0 0 chr1 72716308 72716339 -124479093 + AT_rich Low_complexity Low_complexity 1 31 0 4 1139 477 0 0 0 chr1 72716404 72716457 -124478975 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 4 1139 21 0 0 0 chr1 72717332 72717353 -124478079 + AT_rich Low_complexity Low_complexity 1 21 0 4 1139 375 90 12 25 chr1 72718114 72718194 -124477238 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1139 335 284 14 14 chr1 72718258 72718401 -124477031 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 1139 206 30 0 83 chr1 72718493 72718529 -124476903 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1139 383 186 165 10 chr1 72718561 72718664 -124476768 - B1_Mus1 SINE Alu 0 148 30 4 1139 391 269 56 0 chr1 72718632 72718740 -124476692 - B4A SINE B4 -47 245 132 4 1139 350 287 64 0 chr1 72719050 72719144 -124476288 - B4A SINE B4 -191 101 2 4 1139 301 293 216 47 chr1 72719812 72720048 -124475384 - HAL1 LINE L1 -2209 298 23 4 1139 30 27 0 0 chr1 72720427 72720464 -124474968 + AT_rich Low_complexity Low_complexity 1 37 0 4 1139 345 377 88 31 chr1 72721204 72721464 -124473968 + MLT1J LTR MaLR 71 345 -167 4 1139 1176 50 0 0 chr1 72721465 72721606 -124473826 + B1_Mus1 SINE Alu 2 142 -6 4 1139 24 0 0 0 chr1 72721606 72721630 -124473802 + AT_rich Low_complexity Low_complexity 1 24 0 4 1139 21 0 0 0 chr1 72722547 72722568 -124472864 + AT_rich Low_complexity Low_complexity 1 21 0 4 1139 1224 43 0 0 chr1 72723592 72723733 -124471699 + B1_Mm SINE Alu 1 141 -6 4 1139 333 0 0 0 chr1 72723735 72723772 -124471660 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1139 404 321 91 26 chr1 72723831 72724138 -124471294 + L1MCa LINE L1 4 330 -6178 4 1139 323 258 0 0 chr1 72724587 72724653 -124470779 - ID4_ SINE ID -16 67 2 4 1139 5550 34 0 0 chr1 72724892 72725535 -124469897 - L1Md_T LINE L1 0 6582 5940 4 1139 3107 17 0 0 chr1 72725535 72725884 -124469548 + L1Md_T LINE L1 5594 5942 -640 4 1139 568 267 23 8 chr1 72725889 72726021 -124469411 - ID_B1 SINE B4 -7 217 84 4 1139 243 0 0 0 chr1 72727204 72727231 -124468201 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1139 575 116 36 0 chr1 72727980 72728092 -124467340 + CT-rich Low_complexity Low_complexity 1 116 0 4 1139 195 42 0 0 chr1 72728193 72728217 -124467215 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 4 1139 221 30 61 0 chr1 72730520 72730553 -124464879 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1139 2170 97 13 0 chr1 72730840 72731151 -124464281 - L1_Mm LINE L1 -3553 2330 2016 4 1139 14118 88 16 7 chr1 72731149 72733257 -124462175 + L1_Mus2 LINE L1 3840 5965 -601 4 1139 928 62 0 8 chr1 72733257 72733386 -124462046 + B1_Mus2 SINE Alu 19 146 -1 4 1139 323 181 63 112 chr1 72733264 72733407 -124462025 + B4A SINE B4 111 246 -46 4 1139 4724 108 8 5 chr1 72733408 72734076 -124461356 + L1_Mus3 LINE L1 5968 6637 -1 4 1139 289 212 172 0 chr1 72734713 72734812 -124460620 - PB1D10 SINE Alu 0 117 2 4 1139 432 0 0 0 chr1 72735452 72735500 -124459932 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1139 332 289 25 58 chr1 72735585 72735706 -124459726 - PB1 SINE Alu -8 119 3 4 1139 22 35 0 0 chr1 72735754 72735783 -124459649 + AT_rich Low_complexity Low_complexity 1 29 0 4 1139 2032 146 39 50 chr1 72736013 72736395 -124459037 - ORR1C1 LTR MaLR 0 378 1 4 1139 289 308 93 0 chr1 72736983 72737090 -124458342 + Lx8 LINE L1 7009 7125 -348 4 1139 1277 253 38 66 chr1 72737878 72738100 -124457332 + Lx9 LINE L1 900 1119 -6489 4 1139 1221 54 0 0 chr1 72738100 72738247 -124457185 + B1_Mus2 SINE Alu 1 147 0 4 1139 2200 242 56 65 chr1 72738247 72738697 -124456735 + Lx9 LINE L1 1120 1544 -4303 4 1139 540 0 0 0 chr1 72738697 72738757 -124456675 + (CAAAA)n Simple_repeat Simple_repeat 3 62 0 4 1139 2200 240 60 65 chr1 72738757 72739409 -124456023 + Lx9 LINE L1 1545 2208 -3639 4 1139 2540 213 28 43 chr1 72740110 72740827 -124454605 + Lx9 LINE L1 2198 2903 -2944 4 1139 684 171 122 7 chr1 72740854 72741001 -124454431 + B3 SINE B2 53 216 0 4 1139 677 267 28 56 chr1 72741068 72741425 -124454007 + L1M2 LINE L1 3001 3347 -2796 4 1139 3023 61 15 18 chr1 72741425 72741823 -124453609 - L1Md_F3 LINE L1 -4 6580 6184 4 1139 520 246 30 7 chr1 72741852 72741987 -124453445 + L1_Mur3 LINE L1 3694 3831 -2049 4 1139 1940 113 35 6 chr1 72741988 72742300 -124453132 - ORR1A3 LTR MaLR 0 326 6 4 1139 1443 211 35 52 chr1 72742360 72742764 -124452668 + Lx9 LINE L1 4484 4880 -967 4 1139 897 206 12 12 chr1 72742761 72743140 -124452292 - SYNREP_MM Satellite Satellite -70 401 1 4 1139 1793 235 227 24 chr1 72743141 72743385 -124452047 + Lx9 LINE L1 4888 5144 -703 4 1139 1050 63 226 6 chr1 72743385 72743544 -124451888 + B2_Mm2 SINE B2 1 194 -1 4 1139 1793 235 227 24 chr1 72743544 72743576 -124451856 + Lx9 LINE L1 5145 5202 -645 4 1139 195 42 0 0 chr1 72743576 72743600 -124451832 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1139 1793 247 210 23 chr1 72743600 72744255 -124451177 + Lx9 LINE L1 5203 6045 -1599 4 1139 249 263 0 0 chr1 72744340 72744397 -124451035 + (TATG)n Simple_repeat Simple_repeat 2 58 0 4 1139 1519 230 6 6 chr1 72744478 72744797 -124450635 + Lx7 LINE L1 7087 7405 -291 4 1139 336 48 0 0 chr1 72744802 72744844 -124450588 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1139 306 0 0 0 chr1 72744844 72744877 -124450555 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1140 1050 254 136 8 chr1 72746029 72746398 -124449034 - MTD LTR MaLR -2 417 2 4 1140 30 77 0 0 chr1 72748196 72748261 -124447171 + AT_rich Low_complexity Low_complexity 1 65 0 4 1140 5136 140 25 28 chr1 72748310 72748365 -124447067 - L1_Mur2 LINE L1 -906 4971 4929 4 1140 1154 70 0 0 chr1 72748365 72748507 -124446925 + B1_Mus1 SINE Alu 1 142 -6 4 1140 369 0 0 0 chr1 72748509 72748550 -124446882 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1140 5136 140 25 28 chr1 72748550 72749409 -124446023 - Lx2 LINE L1 -949 4928 4057 4 1140 4927 155 19 58 chr1 72749361 72749859 -124445573 + Lx2 LINE L1 4985 5468 -418 4 1140 1222 21 7 7 chr1 72749859 72750005 -124445427 + B1_Mus2 SINE Alu 2 147 0 4 1140 7186 159 41 43 chr1 72750005 72750872 -124444560 + Lx2 LINE L1 5469 6296 -701 4 1140 1485 78 16 0 chr1 72750872 72751064 -124444368 + B2_Mm2 SINE B2 1 195 0 4 1140 7186 162 63 29 chr1 72751064 72751715 -124443717 + Lx2 LINE L1 6297 6995 -2 4 1140 192 342 14 0 chr1 72751917 72751990 -124443442 + MIRm SINE MIR 60 133 -143 4 1140 353 289 152 32 chr1 72752539 72752787 -124442645 - MLT1A0 LTR MaLR -96 278 1 4 1140 1046 66 73 0 chr1 72753495 72753632 -124441800 - B1_Mus2 SINE Alu 0 147 1 4 1140 285 70 53 0 chr1 72753921 72753978 -124441454 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 4 1140 633 206 131 71 chr1 72753982 72754180 -124441252 + B3 SINE B2 1 210 -6 4 1140 425 202 0 133 chr1 72754464 72754584 -124440848 + PB1 SINE Alu 24 127 0 4 1140 254 270 13 13 chr1 72754616 72754691 -124440741 + MLT1A1 LTR MaLR 21 95 -313 4 1140 3374 211 145 9 chr1 72754833 72755745 -124439687 + Lx9 LINE L1 6602 7637 -7 4 1140 21 0 0 0 chr1 72755756 72755777 -124439655 + AT_rich Low_complexity Low_complexity 1 21 0 4 1140 203 175 0 24 chr1 72755920 72755961 -124439471 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1140 259 281 57 0 chr1 72756167 72756294 -124439138 + MER112 DNA MER1_type 120 260 -1 4 1140 269 276 64 101 chr1 72756319 72756428 -124439004 + PB1 SINE Alu 21 125 -2 4 1140 254 254 31 16 chr1 72756438 72756502 -124438930 + ID4_ SINE ID 3 67 -16 4 1140 21 0 0 0 chr1 72756689 72756710 -124438722 + AT_rich Low_complexity Low_complexity 1 21 0 4 1140 343 269 219 6 chr1 72756732 72756869 -124438563 - B3 SINE B2 -6 210 48 4 1140 1204 29 0 0 chr1 72756978 72757117 -124438315 + B1_Mus2 SINE Alu 1 139 -8 4 1140 1446 69 16 0 chr1 72757242 72757431 -124438001 - B2_Mm1a SINE B2 0 193 2 4 1140 21 0 0 0 chr1 72758668 72758689 -124436743 + AT_rich Low_complexity Low_complexity 1 21 0 4 1140 243 70 66 0 chr1 72758920 72758966 -124436466 + B1_Mm SINE Alu 97 148 -1 4 1140 1211 34 0 26 chr1 72758991 72759142 -124436290 + B1_Mus2 SINE Alu 1 147 0 4 1140 290 250 326 7 chr1 72760943 72761084 -124434348 - B3A SINE B2 -12 186 1 4 1140 275 236 28 0 chr1 72761399 72761471 -124433961 - RCHARR1 DNA MER1_type -39 935 862 4 1140 265 207 232 0 chr1 72761653 72761735 -124433697 - RCHARR1 DNA MER1_type -238 736 636 4 1140 929 95 57 21 chr1 72761795 72761935 -124433497 + B1_Mus1 SINE Alu 1 145 -3 4 1140 316 318 9 26 chr1 72762076 72762189 -124433243 + RSINE1 SINE B4 34 144 -21 4 1140 1021 88 0 52 chr1 72762216 72762371 -124433061 - B1_Mus1 SINE Alu 0 148 2 4 1140 520 189 86 8 chr1 72762395 72762523 -124432909 + B1_Mur2 SINE Alu 2 139 -10 4 1140 288 200 324 0 chr1 72762579 72762684 -124432748 + L1MEg LINE L1 1681 1819 -4265 4 1140 258 148 180 0 chr1 72762719 72762780 -124432652 + ID4_ SINE ID 1 72 -11 4 1140 343 217 0 0 chr1 72763234 72763303 -124432129 - PB1D9 SINE Alu -80 69 1 4 1140 399 248 10 29 chr1 72764545 72764649 -124430783 - PB1D10 SINE Alu -15 102 1 4 1140 318 87 0 0 chr1 72764979 72765025 -124430407 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1140 1232 48 0 0 chr1 72765026 72765172 -124430260 - B1_Mus2 SINE Alu 0 147 2 4 1140 620 223 25 0 chr1 72765991 72766112 -124429320 + B3 SINE B2 2 125 -91 4 1140 871 124 112 47 chr1 72766230 72766399 -124429033 + B2_Mm2 SINE B2 2 181 -14 4 1140 1391 70 48 0 chr1 72766457 72766643 -124428789 - B2_Mm2 SINE B2 0 195 1 4 1140 927 136 14 0 chr1 72767720 72767860 -124427572 - B1_Mur4 SINE Alu -5 145 4 4 1140 927 103 19 0 chr1 72768002 72768157 -124427275 + (TC)n Simple_repeat Simple_repeat 1 158 0 4 1140 414 0 0 0 chr1 72768157 72768203 -124427229 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1140 513 300 29 0 chr1 72768204 72768344 -124427088 - RSINE1 SINE B4 -20 145 2 5 1140 360 0 0 0 chr1 72768355 72768395 -124427037 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 1140 619 224 30 0 chr1 72768396 72768530 -124426902 - B1_Mur1 SINE Alu -9 140 3 5 1140 1292 65 59 0 chr1 72768549 72768718 -124426714 - B2_Mm2 SINE B2 -15 180 2 5 1140 197 283 97 0 chr1 72769743 72769856 -124425576 + MIR SINE MIR 74 197 -65 5 1140 321 26 0 0 chr1 72769963 72770001 -124425431 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1140 1046 195 58 14 chr1 72770015 72770223 -124425209 + Lx5 LINE L1 6432 6648 -402 5 1140 1077 76 0 0 chr1 72770223 72770368 -124425064 + B2_Mm2 SINE B2 1 145 -50 5 1140 336 24 0 0 chr1 72770369 72770410 -124425022 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1140 1596 242 36 62 chr1 72770432 72770850 -124424582 + Lx5 LINE L1 6636 7042 -8 5 1140 26 30 0 0 chr1 72770892 72770925 -124424507 + AT_rich Low_complexity Low_complexity 1 33 0 5 1140 441 0 0 0 chr1 72770966 72771015 -124424417 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1140 1082 125 0 6 chr1 72771434 72771611 -124423821 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 5 1140 660 59 0 0 chr1 72771620 72771705 -124423727 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 5 1140 639 39 0 0 chr1 72772793 72772871 -124422561 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1140 466 231 151 142 chr1 72773283 72773406 -124422026 + ORR1D2 LTR MaLR 1 143 -227 5 1140 1231 76 42 32 chr1 72773406 72773596 -124421836 - B2_Mm1t SINE B2 0 193 2 5 1140 466 231 151 142 chr1 72773596 72773684 -124421748 + ORR1D2 LTR MaLR 144 214 -156 5 1140 338 263 10 31 chr1 72773959 72774057 -124421375 + B4A SINE B4 1 96 -196 5 1140 322 204 149 40 chr1 72774060 72774208 -124421224 + Lx8 LINE L1 7306 7469 -4 5 1140 229 294 23 23 chr1 72774249 72774336 -124421096 - ORR1D2 LTR MaLR -260 110 24 5 1140 315 277 100 15 chr1 72774334 72774466 -124420966 + B4 SINE B4 75 274 -18 5 1140 434 65 0 16 chr1 72774486 72774549 -124420883 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1140 279 0 0 0 chr1 72774549 72774579 -124420853 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1140 309 259 93 58 chr1 72774581 72774798 -124420634 + MIR SINE MIR 1 232 -36 5 1140 207 0 0 0 chr1 72775618 72775641 -124419791 + (CAG)n Simple_repeat Simple_repeat 1 23 0 5 1140 694 254 27 33 chr1 72775715 72775902 -124419530 - B3A SINE B2 -20 196 10 5 1140 568 232 47 52 chr1 72776622 72776854 -124418578 - L1MC3 LINE L1 -14 7771 7541 5 1140 322 184 158 0 chr1 72777024 72777100 -124418332 - L1MC3 LINE L1 -238 7547 7460 5 1140 269 350 68 26 chr1 72777116 72777307 -124418125 - MER21B LTR ERV1 0 863 665 5 1140 277 360 85 0 chr1 72777307 72777460 -124417972 - MER21B LTR ERV1 -422 441 276 5 1140 311 280 73 36 chr1 72777805 72777942 -124417490 - L1MC3 LINE L1 -934 6851 6710 5 1140 358 292 41 20 chr1 72778000 72778098 -124417334 - ID_B1 SINE B4 -21 203 104 5 1140 196 241 16 94 chr1 72778654 72778718 -124416714 - MIR3 SINE MIR -45 163 105 5 1140 279 113 0 0 chr1 72778718 72778771 -124416661 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1140 1309 104 5 30 chr1 72778873 72779072 -124416360 + B2_Mm2 SINE B2 2 195 0 5 1140 1143 119 0 0 chr1 72779075 72779251 -124416181 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 5 1140 268 257 204 10 chr1 72779322 72779450 -124415982 + MIRc SINE MIR 33 171 -37 5 1140 284 364 38 8 chr1 72780652 72780785 -124414647 + MIRb SINE MIR 41 177 -91 5 1140 1481 74 21 0 chr1 72780935 72781124 -124414308 - B2_Mm2 SINE B2 -2 193 1 5 1140 221 83 0 27 chr1 72781141 72781178 -124414254 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 5 1140 721 150 38 30 chr1 72781178 72781301 -124414131 - B1_Mur3 SINE Alu -14 135 10 5 1140 540 0 0 0 chr1 72781307 72781367 -124414065 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1140 231 395 21 21 chr1 72782641 72782835 -124412597 + MIR SINE MIR 60 253 -9 5 1140 249 33 0 0 chr1 72783680 72783710 -124411722 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1140 563 301 125 72 chr1 72784813 72785174 -124410258 - MLT1B LTR MaLR -5 385 6 5 1140 252 248 138 37 chr1 72785246 72785355 -124410077 + MIRb SINE MIR 139 258 -10 5 1140 216 0 0 0 chr1 72785372 72785396 -124410036 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1140 216 335 9 0 chr1 72786258 72786343 -124409089 + L2c LINE L2 3246 3349 -38 5 1140 639 185 10 5 chr1 72787032 72787163 -124408269 + B1F2 SINE Alu 28 149 0 5 1140 424 293 113 16 chr1 72787335 72787529 -124407903 - MIR SINE MIR -29 233 21 5 1140 1258 75 6 11 chr1 72788414 72788569 -124406863 + B2_Mm2 SINE B2 1 155 -40 5 1140 465 19 0 0 chr1 72788569 72788623 -124406809 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 1140 1258 75 6 11 chr1 72788623 72788643 -124406789 + B2_Mm2 SINE B2 156 175 -20 5 1140 653 179 65 0 chr1 72788772 72788895 -124406537 - MTD LTR MaLR 0 419 289 5 1140 1137 55 0 0 chr1 72788908 72789053 -124406379 + (TTCCC)n Simple_repeat Simple_repeat 2 146 0 5 1140 908 86 6 26 chr1 72789053 72789209 -124406223 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 5 1140 302 248 135 54 chr1 72789213 72789324 -124406108 - MTD LTR MaLR -225 194 75 5 1140 201 339 0 0 chr1 72789958 72790017 -124405415 - MIRb SINE MIR -46 222 164 5 1140 207 0 0 0 chr1 72791104 72791127 -124404305 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1140 180 111 0 0 chr1 72791272 72791299 -124404133 + (TCC)n Simple_repeat Simple_repeat 2 28 0 5 1140 298 358 51 26 chr1 72791764 72791959 -124403473 - Charlie15a DNA MER1_type -5 219 20 5 1140 594 0 0 0 chr1 72792183 72792249 -124403183 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1140 279 260 0 52 chr1 72792378 72792455 -124402977 - MIRb SINE MIR -75 193 121 5 1140 1062 88 0 0 chr1 72792603 72792740 -124402692 - B1_Mus1 SINE Alu -9 139 3 5 1140 373 259 44 9 chr1 72793584 72793697 -124401735 + PB1D10 SINE Alu 1 117 0 5 1140 369 0 0 0 chr1 72794994 72795035 -124400397 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 1140 250 230 14 0 chr1 72795038 72795112 -124400320 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1140 729 243 0 26 chr1 72795134 72795286 -124400146 - RSINE1 SINE B4 -6 159 12 5 1140 327 289 36 0 chr1 72795543 72795626 -124399806 + ORR1E LTR MaLR 19 104 -255 5 1140 779 298 83 101 chr1 72797453 72797838 -124397594 + MTEa LTR MaLR 2 379 0 5 1140 986 323 74 37 chr1 72797849 72798335 -124397097 + MLT1G1 LTR MaLR 73 576 -3 5 1140 353 22 22 0 chr1 72798671 72798717 -124396715 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1140 323 326 115 106 chr1 72798961 72799301 -124396131 - L1ME4a LINE L1 -122 6002 5660 5 1140 260 111 22 0 chr1 72799371 72799416 -124396016 + (TAG)n Simple_repeat Simple_repeat 3 48 0 5 1140 404 290 21 97 chr1 72799433 72799459 -124395973 - RSINE1 SINE B4 -1 164 146 5 1140 2639 91 75 3 chr1 72799459 72799832 -124395600 - MTB LTR MaLR 0 400 1 5 1140 404 290 21 97 chr1 72799832 72799950 -124395482 - RSINE1 SINE B4 -20 145 31 5 1140 371 307 0 0 chr1 72799974 72800075 -124395357 - PB1D10 SINE Alu -3 114 14 5 1140 257 322 76 0 chr1 72800399 72800517 -124394915 - MIRb SINE MIR -62 206 80 5 1140 447 320 89 48 chr1 72801145 72801414 -124394018 + MamRep38 DNA hAT 3 282 -13 5 1140 219 241 0 18 chr1 72802859 72802914 -124392518 + CT-rich Low_complexity Low_complexity 5 58 0 5 1140 25 31 0 0 chr1 72803640 72803672 -124391760 + AT_rich Low_complexity Low_complexity 1 32 0 5 1140 797 270 34 0 chr1 72803794 72803972 -124391460 - B3 SINE B2 -30 186 3 5 1140 369 291 41 108 chr1 72804282 72804598 -124390834 + L1MC4a LINE L1 5604 5898 -1984 5 1140 698 248 7 0 chr1 72804628 72804773 -124390659 + ID_B1 SINE B4 79 224 0 5 1140 260 277 161 21 chr1 72804794 72804990 -124390442 + RMER12 LTR ERVK 768 996 -326 5 1140 349 303 48 77 chr1 72804990 72805158 -124390274 - RSINE1 SINE B4 0 165 3 5 1140 260 277 161 21 chr1 72805158 72805197 -124390235 + RMER12 LTR ERVK 997 1035 -287 5 1140 369 0 0 0 chr1 72805373 72805414 -124390018 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1140 1125 106 43 32 chr1 72805752 72805937 -124389495 + B2_Mm2 SINE B2 1 187 -8 5 1140 1281 62 65 43 chr1 72806101 72806287 -124389145 - B2_Mm2 SINE B2 -4 191 2 5 1140 249 275 43 0 chr1 72806325 72806394 -124389038 - ID4_ SINE ID -10 73 2 5 1140 846 294 49 71 chr1 72806798 72807164 -124388268 - ORR1E LTR MaLR -1 358 1 5 1140 615 291 46 97 chr1 72807193 72807619 -124387813 + MTC LTR MaLR 40 417 -2 5 1140 378 0 0 0 chr1 72807839 72807881 -124387551 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 5 1140 603 0 0 0 chr1 72808117 72808184 -124387248 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1140 432 257 113 9 chr1 72808311 72808417 -124387015 - B1_Mus2 SINE Alu -30 117 1 5 1140 310 281 0 58 chr1 72808351 72808438 -124386994 - B4 SINE B4 -142 150 69 5 1140 477 290 68 7 chr1 72808450 72808596 -124386836 - ID_B1 SINE B4 0 224 70 5 1140 242 326 10 87 chr1 72809148 72809252 -124386180 - MER5A1 DNA MER1_type -59 107 12 5 1140 268 211 88 50 chr1 72809712 72809792 -124385640 + ID4 SINE ID 1 83 0 5 1140 321 351 80 47 chr1 72809844 72810056 -124385376 + MIR SINE MIR 19 237 -25 5 1140 486 308 148 78 chr1 72810226 72810870 -124384562 + L1MEd LINE L1 312 1000 -5119 5 1140 22 0 0 0 chr1 72811686 72811708 -124383724 + GC_rich Low_complexity Low_complexity 1 22 0 5 1140 189 0 0 0 chr1 72812568 72812589 -124382843 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 5 1140 483 76 0 0 chr1 72812654 72812720 -124382712 - B2_Mm1a SINE B2 -14 179 114 5 1140 574 207 27 0 chr1 72812766 72812877 -124382555 - MTEa LTR MaLR -38 341 228 5 1140 2090 134 71 66 chr1 72813095 72813487 -124381945 + ORR1B1 LTR MaLR 1 394 0 5 1140 3939 268 51 18 chr1 72813953 72815039 -124380393 + Lx8 LINE L1 6352 7472 -1 6 1140 912 266 18 5 chr1 72815339 72815557 -124379875 + B4A SINE B4 10 230 -62 6 1140 451 319 12 75 chr1 72815557 72815730 -124379702 + RSINE1 SINE B4 4 165 0 6 1140 26 0 0 0 chr1 72815747 72815773 -124379659 + AT_rich Low_complexity Low_complexity 1 26 0 6 1140 918 209 43 29 chr1 72815787 72815994 -124379438 - B3 SINE B2 -5 211 2 6 1140 263 197 0 176 chr1 72816019 72816093 -124379339 + B4A SINE B4 222 282 -10 6 1140 286 350 55 35 chr1 72816302 72816447 -124378985 + B1F SINE Alu 2 149 0 6 1140 246 319 42 0 chr1 72816453 72816525 -124378907 + ID4_ SINE ID 5 79 -4 6 1140 6195 94 77 3 chr1 72816585 72817477 -124377955 - RMER17B LTR ERVK 0 958 1 6 1140 822 145 0 0 chr1 72817777 72817915 -124377517 + (TCCCC)n Simple_repeat Simple_repeat 4 141 0 6 1140 184 122 24 24 chr1 72817910 72817952 -124377480 + CT-rich Low_complexity Low_complexity 2 43 0 6 1140 883 161 0 53 chr1 72817954 72818105 -124377327 - B1_Mur2 SINE Alu -5 144 2 6 1140 231 242 120 50 chr1 72818432 72818532 -124376900 - Charlie8 DNA MER1_type -675 1753 1647 6 1140 258 32 0 0 chr1 72818558 72818589 -124376843 + (CGG)n Simple_repeat Simple_repeat 1 31 0 6 1140 915 88 20 7 chr1 72818627 72818775 -124376657 + (GAAA)n Simple_repeat Simple_repeat 4 153 0 6 1140 283 223 31 21 chr1 72818775 72818787 -124376645 + polypurine Low_complexity Low_complexity 1 12 0 6 1140 1244 51 17 6 chr1 72818787 72818965 -124376467 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1140 283 223 31 21 chr1 72818965 72819048 -124376384 + GA-rich Low_complexity Low_complexity 13 97 0 6 1140 227 228 36 186 chr1 72819312 72819452 -124375980 + MER66C LTR ERV1 294 412 -143 6 1140 928 153 47 0 chr1 72820089 72820239 -124375193 + MTC LTR MaLR 1 157 -264 6 1140 477 110 0 0 chr1 72820247 72820320 -124375112 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1140 198 91 0 0 chr1 72820615 72820648 -124374784 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1140 1182 75 0 0 chr1 72820649 72820796 -124374636 - B1_Mus2 SINE Alu 0 147 1 6 1140 1931 190 94 10 chr1 72820888 72821293 -124374139 + Lx7 LINE L1 6858 7296 -400 6 1140 295 238 36 98 chr1 72821298 72821410 -124374022 + Lx7 LINE L1 7549 7653 -43 6 1140 347 304 10 11 chr1 72821526 72821624 -124373808 + B4A SINE B4 1 97 -195 6 1140 302 353 63 10 chr1 72821688 72821894 -124373538 + MER20 DNA MER1_type 2 218 -1 6 1140 971 17 8 0 chr1 72821910 72822027 -124373405 + (TTC)n Simple_repeat Simple_repeat 2 119 0 6 1140 1181 62 0 0 chr1 72822027 72822171 -124373261 - B1_Mus2 SINE Alu -2 145 2 6 1140 671 128 137 0 chr1 72822269 72822386 -124373046 + B1_Mus2 SINE Alu 14 146 -1 6 1140 3128 125 39 25 chr1 72822990 72823506 -124371926 - RLTR11A LTR ERVK -5 523 1 6 1140 396 0 0 0 chr1 72823817 72823861 -124371571 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 6 1140 914 172 0 11 chr1 72823861 72824043 -124371389 + CT-rich Low_complexity Low_complexity 1 180 0 6 1140 189 317 17 0 chr1 72824065 72824125 -124371307 + MIRb SINE MIR 186 246 -22 6 1140 881 251 197 46 chr1 72824512 72824962 -124370470 - MLT1B LTR MaLR -3 464 8 6 1140 745 311 67 0 chr1 72826782 72827036 -124368396 + MLT1B LTR MaLR 62 332 -58 6 1140 183 204 0 0 chr1 72827111 72827155 -124368277 + T-rich Low_complexity Low_complexity 1 44 0 6 1140 328 275 34 84 chr1 72827485 72827604 -124367828 + MER113 DNA MER1_type 3 115 -406 6 1140 433 315 89 41 chr1 72827647 72827918 -124367514 + MER113 DNA MER1_type 196 479 -42 6 1140 993 122 0 0 chr1 72828416 72828572 -124366860 + (TTCC)n Simple_repeat Simple_repeat 2 157 0 6 1140 663 227 0 4 chr1 72828608 72828740 -124366692 - B1_Mur1 SINE Alu -21 128 1 6 1140 968 86 0 7 chr1 72829811 72829952 -124365480 + (GAA)n Simple_repeat Simple_repeat 2 141 0 6 1140 306 103 29 29 chr1 72830532 72830602 -124364830 + CT-rich Low_complexity Low_complexity 2 71 0 6 1140 965 176 0 0 chr1 72831361 72831509 -124363923 + B1_Mus1 SINE Alu 1 148 0 6 1140 249 139 0 0 chr1 72831509 72831552 -124363880 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1140 771 242 98 101 chr1 72831851 72832209 -124363223 - ORR1E LTR MaLR 0 359 3 6 1140 524 254 172 0 chr1 72832335 72832469 -124362963 - RSINE1 SINE B4 -7 158 2 6 1140 608 281 88 0 chr1 72832970 72833162 -124362270 - L1M4 LINE L1 -1096 5050 4842 6 1140 1272 41 0 0 chr1 72833614 72833760 -124361672 - B1_Mus2 SINE Alu 0 147 2 6 1140 685 259 7 0 chr1 72834314 72834449 -124360983 + RSINE1 SINE B4 2 137 -28 6 1140 245 259 60 0 chr1 72834906 72835022 -124360410 + ORR1B1-int LTR MaLR 632 754 -755 6 1140 1092 58 0 14 chr1 72834923 72835064 -124360368 + B1_Mus1 SINE Alu 10 148 0 6 1140 563 184 0 10 chr1 72835097 72835201 -124360231 - RMER17C LTR ERVK -13 397 295 6 1140 673 145 32 0 chr1 72835220 72835344 -124360088 - RMER17C LTR ERVK -282 128 1 6 1140 544 333 86 41 chr1 72835367 72835636 -124359796 + LTR16E1 LTR ERVL 251 531 -7 6 1140 342 45 0 0 chr1 72836088 72836132 -124359300 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 6 1140 877 261 69 0 chr1 72836149 72836337 -124359095 - B3 SINE B2 -13 203 3 6 1140 286 274 32 89 chr1 72836431 72836494 -124358938 - B4A SINE B4 -2 290 233 6 1140 795 253 11 42 chr1 72836494 72836684 -124358748 - B3A SINE B2 -13 185 2 6 1140 418 269 400 31 chr1 72836684 72836851 -124358581 - B4A SINE B4 -60 232 2 6 1140 318 346 19 0 chr1 72837744 72837851 -124357581 - MIR SINE MIR -67 141 33 6 1140 240 312 24 36 chr1 72837866 72837949 -124357483 - RMER17A LTR ERVK -578 173 92 6 1140 396 247 22 11 chr1 72837950 72838040 -124357392 + MIRc SINE MIR 65 155 -113 6 1140 257 291 44 59 chr1 72838559 72838694 -124356738 + MT2B LTR ERVL 131 263 -338 6 1140 545 221 73 16 chr1 72838593 72838717 -124356715 + ID_B1 SINE B4 80 210 -14 6 1140 315 0 0 0 chr1 72838717 72838752 -124356680 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1140 227 345 52 33 chr1 72838938 72839091 -124356341 - MIR SINE MIR -104 158 3 6 1140 535 316 173 4 chr1 72839515 72839763 -124355669 - B4A SINE B4 -2 290 1 6 1140 1693 181 50 52 chr1 72839800 72840206 -124355226 + RMER16 LTR ERVK 3 533 0 6 1140 855 235 209 9 chr1 72840423 72840772 -124354660 + MTD LTR MaLR 1 419 0 6 1140 236 296 25 0 chr1 72840974 72841055 -124354377 - L1MB7 LINE L1 -60 6124 6042 6 1140 950 71 0 16 chr1 72841062 72841190 -124354242 - B1_Mus1 SINE Alu -21 127 2 6 1140 2992 134 2 0 chr1 72841200 72841618 -124353814 - MTC LTR MaLR 0 421 3 6 1140 1170 74 0 7 chr1 72841923 72842072 -124353360 - B1_Mus1 SINE Alu 0 148 1 6 1140 1113 143 142 10 chr1 72842647 72842852 -124352580 - RMER19B LTR ERVK -362 540 309 6 1140 393 283 63 48 chr1 72843222 72843419 -124352013 - ORR1E LTR MaLR -136 231 53 6 1140 318 264 77 44 chr1 72843476 72843567 -124351865 + PB1D10 SINE Alu 17 110 -7 6 1140 436 181 132 9 chr1 72844250 72844356 -124351076 - URR1A DNA MER1_type -107 119 1 6 1140 196 143 143 0 chr1 72844363 72844405 -124351027 + MER5A DNA MER1_type 92 139 -50 6 1140 2172 135 11 56 chr1 72844530 72844560 -124350872 + ORR1B2 LTR MaLR 1 30 -337 6 1140 1124 93 0 0 chr1 72844560 72844699 -124350733 + B1_Mus1 SINE Alu 1 139 -9 6 1140 225 0 0 0 chr1 72844699 72844724 -124350708 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1140 2172 135 11 56 chr1 72844724 72845068 -124350364 + ORR1B2 LTR MaLR 31 358 -9 6 1140 374 228 0 48 chr1 72845082 72845165 -124350267 - ID4 SINE ID 0 83 5 6 1140 252 342 59 8 chr1 72845345 72845463 -124349969 + MER102c DNA MER1_type 179 302 -29 6 1140 199 79 26 26 chr1 72845977 72846016 -124349416 + (GAGAA)n Simple_repeat Simple_repeat 5 43 0 6 1140 357 43 0 0 chr1 72846019 72846066 -124349366 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 6 1140 898 191 137 0 chr1 72846698 72846881 -124348551 + B3 SINE B2 2 209 -7 6 1140 1104 58 65 0 chr1 72846896 72847035 -124348397 + B1_Mus1 SINE Alu 1 148 0 6 1140 189 0 0 0 chr1 72847035 72847056 -124348376 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1140 367 295 57 8 chr1 72847141 72847333 -124348099 - ORR1E LTR MaLR -13 361 158 6 1140 1235 48 0 0 chr1 72847534 72847681 -124347751 + B1_Mus2 SINE Alu 1 147 0 6 1140 231 114 0 0 chr1 72847681 72847716 -124347716 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1140 1215 251 136 25 chr1 72847727 72848124 -124347308 - MER31A LTR ERV1 -36 449 9 6 1140 308 111 0 18 chr1 72848240 72848295 -124347137 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1140 254 53 17 50 chr1 72848373 72848433 -124346999 + (TTTTG)n Simple_repeat Simple_repeat 4 61 0 6 1140 1162 68 0 14 chr1 72848434 72848582 -124346850 - B1_Mus1 SINE Alu -2 146 1 6 1140 504 0 0 0 chr1 72848787 72848843 -124346589 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1140 329 336 81 45 chr1 72848856 72849077 -124346355 - B4 SINE B4 -11 281 53 6 1140 893 185 8 0 chr1 72849155 72849394 -124346038 + CT-rich Low_complexity Low_complexity 1 241 0 6 1140 1015 130 0 17 chr1 72849394 72849574 -124345858 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1140 1201 69 0 0 chr1 72849574 72849718 -124345714 - B1_Mus1 SINE Alu -3 145 2 6 1140 1145 75 7 0 chr1 72849829 72849976 -124345456 + B1_Mus1 SINE Alu 1 148 0 6 1140 220 328 116 21 chr1 72850415 72850605 -124344827 - MIR SINE MIR -35 227 20 6 1140 1189 68 0 7 chr1 72851176 72851324 -124344108 - B1_Mus1 SINE Alu 0 148 2 6 1140 367 340 113 14 chr1 72851729 72851941 -124343491 + LTR33A LTR ERVL 43 275 -245 6 1140 22 35 0 0 chr1 72852017 72852046 -124343386 + AT_rich Low_complexity Low_complexity 1 29 0 7 1140 266 292 0 0 chr1 72852412 72852484 -124342948 + ID4 SINE ID 3 74 -9 7 1140 343 331 108 20 chr1 72853345 72853493 -124341939 + MER5C1 DNA MER1_type 103 263 0 7 1140 502 107 311 0 chr1 72853547 72853650 -124341782 + B1_Mus1 SINE Alu 1 135 -13 7 1140 363 229 60 91 chr1 72854174 72854346 -124341086 + MT2B LTR ERVL 96 264 -320 7 1140 798 90 9 0 chr1 72854244 72854355 -124341077 + B1_Mus1 SINE Alu 11 122 -26 7 1140 216 0 0 0 chr1 72854368 72854392 -124341040 + (TAA)n Simple_repeat Simple_repeat 2 25 0 7 1140 392 117 17 0 chr1 72854400 72854460 -124340972 + URR1B DNA MER1_type 165 225 0 7 1140 1144 75 7 0 chr1 72854572 72854718 -124340714 + B1_Mm SINE Alu 1 147 0 7 1140 746 251 28 72 chr1 72854741 72854772 -124340660 - RLTR20B1 LTR ERVK -340 238 211 7 1140 411 21 0 0 chr1 72854772 72854820 -124340612 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 7 1140 1062 179 43 27 chr1 72854820 72855037 -124340395 - RLTR20B1 LTR ERVK -368 210 1 7 1140 287 217 0 16 chr1 72855042 72855103 -124340329 + RSINE1 SINE B4 102 161 -4 7 1140 249 57 0 0 chr1 72855122 72855157 -124340275 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 7 1140 340 359 122 30 chr1 72855496 72855726 -124339706 - Helitron3Na_Mam RC Helitron -200 286 36 7 1140 191 289 101 67 chr1 72856525 72856614 -124338818 - MIR SINE MIR -66 142 51 7 1140 496 241 8 25 chr1 72857192 72857311 -124338121 + PB1D10 SINE Alu 1 117 0 7 1140 1007 262 155 19 chr1 72857486 72858074 -124337358 + Lx8 LINE L1 6423 7115 -358 7 1140 239 260 50 10 chr1 72858254 72858355 -124337077 + Lx8 LINE L1 7367 7471 -2 7 1140 269 228 0 12 chr1 72858372 72858384 -124337048 + polypurine Low_complexity Low_complexity 2 13 0 7 1140 1232 48 0 0 chr1 72858384 72858531 -124336901 + B1_Mm SINE Alu 1 147 0 7 1140 269 228 0 12 chr1 72858531 72858598 -124336834 + GA-rich Low_complexity Low_complexity 14 80 0 7 1140 1470 77 0 44 chr1 72858598 72858802 -124336630 + B2_Mm2 SINE B2 1 195 0 7 1140 1457 175 108 18 chr1 72859454 72859615 -124335817 - RMER10B LTR ERVL 0 398 221 7 1140 369 0 0 0 chr1 72859615 72859656 -124335776 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1140 1457 175 108 18 chr1 72859656 72859837 -124335595 - RMER10B LTR ERVL -178 220 25 7 1140 243 0 0 0 chr1 72860321 72860348 -124335084 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1140 357 24 0 0 chr1 72860348 72860389 -124335043 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1140 1756 139 75 21 chr1 72861403 72861792 -124333640 + RMER17C LTR ERVK 1 410 0 7 1140 938 259 14 14 chr1 72861912 72862135 -124333297 + MER58A DNA MER1_type 1 223 -1 7 1140 192 196 65 0 chr1 72862137 72862183 -124333249 - L2 LINE L2 -566 2853 2805 7 1140 1303 48 0 197 chr1 72862601 72862792 -124332640 - B2_Mm2 SINE B2 -7 188 37 7 1140 1000 90 68 0 chr1 72862792 72862925 -124332507 - B1_Mus1 SINE Alu -4 144 3 7 1140 1303 48 0 197 chr1 72862925 72862967 -124332465 - B2_Mm2 SINE B2 -159 36 1 7 1140 420 311 78 69 chr1 72862974 72863219 -124332213 + MLT1G3 LTR MaLR 115 361 -234 7 1140 635 290 66 33 chr1 72863371 72863553 -124331879 + ID_B1 SINE B4 10 197 -27 7 1140 481 235 0 0 chr1 72863527 72863612 -124331820 + B1_Mur1 SINE Alu 65 149 0 7 1140 185 250 36 153 chr1 72863869 72864006 -124331426 - MIRb SINE MIR -70 198 78 7 1140 1027 182 79 32 chr1 72864013 72864229 -124331203 - URR1A DNA MER1_type 0 226 1 7 1140 222 267 0 0 chr1 72864345 72864405 -124331027 + CT-rich Low_complexity Low_complexity 2 61 0 7 1140 468 303 17 143 chr1 72864635 72864830 -124330602 - B3 SINE B2 -6 210 42 7 1140 1282 34 0 0 chr1 72864830 72864977 -124330455 - B1_Mus2 SINE Alu 0 147 1 7 1140 468 303 17 143 chr1 72864977 72865012 -124330420 - B3 SINE B2 -175 41 9 7 1140 483 192 80 10 chr1 72865047 72865147 -124330285 - MIR SINE MIR -82 180 74 7 1140 274 344 56 56 chr1 72865190 72865350 -124330082 - MLT1J1 LTR MaLR -45 399 240 7 1140 212 286 36 0 chr1 72865587 72865643 -124329789 + MIRc SINE MIR 67 124 -144 7 1140 1034 130 188 5 chr1 72866138 72866324 -124329108 + URR1A DNA MER1_type 7 226 0 7 1140 199 328 52 61 chr1 72866356 72866522 -124328910 - MIRb SINE MIR -71 197 29 7 1140 546 213 45 38 chr1 72866657 72866789 -124328643 - B3A SINE B2 -63 135 3 7 1140 540 309 87 41 chr1 72866798 72867236 -124328196 + L1ME3A LINE L1 5713 6170 -3 7 1140 999 273 101 18 chr1 72867242 72867578 -124327854 + MER113 DNA MER1_type 127 490 -31 7 1140 233 244 95 24 chr1 72867798 72867882 -124327550 - L2a LINE L2 -6 3420 3331 7 1140 471 132 0 0 chr1 72868334 72868425 -124327007 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 7 1140 660 26 0 0 chr1 72868425 72868503 -124326929 + (TTTCC)n Simple_repeat Simple_repeat 4 81 0 7 1140 404 250 9 69 chr1 72868504 72868620 -124326812 - PB1D10 SINE Alu -8 109 1 7 1140 642 13 0 0 chr1 72868643 72868718 -124326714 + (CAAAC)n Simple_repeat Simple_repeat 2 76 0 7 1140 392 236 0 0 chr1 72868982 72869054 -124326378 + PB1D10 SINE Alu 12 83 -34 7 1140 708 215 35 0 chr1 72869162 72869306 -124326126 - B1_Mur3 SINE Alu 0 149 1 7 1140 204 122 0 0 chr1 72870932 72870973 -124324459 + (CGGGG)n Simple_repeat Simple_repeat 1 41 0 7 1140 211 205 0 0 chr1 72871179 72871218 -124324214 + (CTG)n Simple_repeat Simple_repeat 2 40 0 7 1140 21 57 0 0 chr1 72871221 72871256 -124324176 + GC_rich Low_complexity Low_complexity 1 35 0 7 1140 327 176 40 127 chr1 72872394 72872544 -124322888 - RMER17A LTR ERVK -282 469 333 7 1140 387 264 82 48 chr1 72874886 72875033 -124320399 + RSINE1 SINE B4 3 154 -11 7 1140 889 141 0 63 chr1 72875084 72875243 -124320189 + B1_Mur4 SINE Alu 2 150 0 7 1140 450 0 0 0 chr1 72875243 72875293 -124320139 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 7 1140 332 273 56 11 chr1 72875588 72875677 -124319755 + RSINE1 SINE B4 27 119 -46 7 1140 378 0 0 0 chr1 72875705 72875747 -124319685 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1140 243 0 0 0 chr1 72875747 72875773 -124319659 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1140 1065 162 0 20 chr1 72875791 72875986 -124319446 + B2_Mm2 SINE B2 2 192 -3 7 1141 345 304 29 10 chr1 72877351 72877454 -124317978 + B1_Mur2 SINE Alu 3 107 -42 7 1141 229 284 15 15 chr1 72877753 72877821 -124317611 + MIRm SINE MIR 77 144 -132 7 1141 969 225 99 5 chr1 72877996 72878219 -124317213 - MTE2b LTR MaLR -33 346 103 7 1141 346 78 448 29 chr1 72878219 72878324 -124317108 - B2_Mm2 SINE B2 0 195 47 7 1141 1083 151 35 0 chr1 72878339 72878511 -124316921 - B2_Mm1t SINE B2 -14 179 2 7 1141 286 309 26 60 chr1 72878542 72878659 -124316773 - MTE2b LTR MaLR -266 113 1 7 1141 222 37 0 0 chr1 72878678 72878705 -124316727 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1141 252 86 0 0 chr1 72879433 72879468 -124315964 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1141 252 335 102 38 chr1 72880556 72880742 -124314690 + MIRb SINE MIR 26 223 -45 7 1141 514 307 66 112 chr1 72880894 72881198 -124314234 + B4A SINE B4 3 292 0 7 1141 199 50 24 48 chr1 72881480 72881522 -124313910 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1141 611 298 0 0 chr1 72881534 72881675 -124313757 - RSINE1 SINE B4 -21 144 4 7 1141 981 222 73 65 chr1 72882560 72882674 -124312758 - Lx9 LINE L1 -2 7642 7520 7 1141 238 87 0 42 chr1 72882674 72882722 -124312710 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1141 981 222 73 65 chr1 72882722 72882757 -124312675 - Lx9 LINE L1 -125 7519 7490 7 1141 1076 78 28 0 chr1 72882757 72882899 -124312533 - B1_Mus2 SINE Alu 0 147 2 7 1141 981 222 73 65 chr1 72882899 72883104 -124312328 - Lx9 LINE L1 -155 7489 7285 7 1141 232 266 16 0 chr1 72883110 72883174 -124312258 - Lx9 LINE L1 -1273 6371 6307 7 1141 571 272 300 7 chr1 72883556 72883826 -124311606 - ORR1D2 LTR MaLR -2 368 19 7 1141 2012 189 21 23 chr1 72884469 72884858 -124310574 - MTC LTR MaLR -33 388 1 7 1141 392 215 12 48 chr1 72884883 72884966 -124310466 - ID4 SINE ID -2 81 2 7 1141 940 112 7 7 chr1 72885226 72885361 -124310071 + B1_Mus1 SINE Alu 14 148 0 7 1141 405 234 37 110 chr1 72885227 72885382 -124310050 + B4A SINE B4 99 243 -49 7 1141 513 0 0 0 chr1 72885382 72885439 -124309993 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 7 1141 220 307 52 26 chr1 72887670 72887747 -124307685 + ID4_ SINE ID 5 83 0 7 1141 1035 213 14 28 chr1 72887990 72888207 -124307225 + B3 SINE B2 1 214 -2 7 1141 2893 51 0 6 chr1 72888275 72888633 -124306799 - L1Md_F2 LINE L1 -12 6570 6215 7 1141 189 0 0 0 chr1 72890078 72890099 -124305333 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7 1141 1212 61 0 0 chr1 72890852 72890999 -124304433 - B1_Mus2 SINE Alu 0 147 1 7 1141 1213 102 101 11 chr1 72892248 72892267 -124303165 - B2_Mm2 SINE B2 0 195 159 7 1141 531 0 0 0 chr1 72892267 72892326 -124303106 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 7 1141 1213 102 101 11 chr1 72892326 72892485 -124302947 - B2_Mm2 SINE B2 -37 158 1 7 1141 1424 74 16 21 chr1 72892492 72892684 -124302748 - B2_Mm2 SINE B2 -4 191 1 7 1141 514 261 84 0 chr1 72892802 72892921 -124302511 - ID_B1 SINE B4 -10 214 86 7 1141 263 49 24 0 chr1 72892929 72892970 -124302462 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1141 518 336 50 111 chr1 72893129 72893427 -124302005 - B4A SINE B4 -5 287 8 7 1141 273 174 80 153 chr1 72893676 72893839 -124301593 - MIRb SINE MIR -73 195 45 7 1141 759 11 0 0 chr1 72893899 72893987 -124301445 + (GGGAA)n Simple_repeat Simple_repeat 5 92 0 7 1141 912 167 0 13 chr1 72894370 72894522 -124300910 - B1_Mur4 SINE Alu 0 150 1 7 1141 321 313 18 30 chr1 72895017 72895141 -124300291 + MIRb SINE MIR 37 155 -121 7 1141 627 300 106 37 chr1 72895162 72895484 -124299948 - ORR1E LTR MaLR -11 348 5 7 1141 348 180 38 30 chr1 72896709 72896841 -124298591 + CT-rich Low_complexity Low_complexity 2 134 0 8 1141 791 171 0 23 chr1 72896841 72896973 -124298459 - B1_Mur4 SINE Alu -21 129 1 8 1141 354 219 0 64 chr1 72896907 72896985 -124298447 - B4A SINE B4 -142 150 78 8 1141 234 0 0 0 chr1 72897701 72897727 -124297705 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 8 1141 641 124 65 28 chr1 72897982 72898090 -124297342 + B1_Mur4 SINE Alu 13 124 -26 8 1141 309 209 30 188 chr1 72898093 72898258 -124297174 + MIRb SINE MIR 103 241 -27 8 1141 364 217 17 25 chr1 72899309 72899400 -124296032 + PB1D10 SINE Alu 3 94 -55 8 1141 1838 140 37 138 chr1 72899521 72899588 -124295844 - ORR1B2 LTR MaLR 0 367 330 8 1141 4286 78 24 12 chr1 72899588 72900174 -124295258 - L1_Mus4 LINE L1 -2 6634 6042 8 1141 1838 140 37 138 chr1 72900174 72900513 -124294919 - ORR1B2 LTR MaLR -38 329 2 8 1141 501 154 52 52 chr1 72900725 72900821 -124294611 + B1_Mus2 SINE Alu 52 147 0 8 1141 345 363 121 0 chr1 72901880 72902037 -124293395 - MER45A DNA Tip100 -1 177 2 8 1141 210 216 77 51 chr1 72903929 72904007 -124291425 + MamSINE1 SINE tRNA 32 111 -179 8 1141 221 146 42 0 chr1 72904903 72904951 -124290481 + A-rich Low_complexity Low_complexity 2 51 0 8 1141 182 271 127 14 chr1 72907078 72907149 -124288283 + L3 LINE CR1 2834 2912 -1577 8 1141 285 310 15 15 chr1 72908599 72908730 -124286702 + CT-rich Low_complexity Low_complexity 1 131 0 8 1141 392 281 87 33 chr1 72909420 72909604 -124285828 - MIR SINE MIR -32 230 37 8 1141 188 328 44 15 chr1 72909635 72909703 -124285729 + MER5A DNA MER1_type 59 128 -61 8 1141 465 19 0 0 chr1 72913820 72913874 -124281558 + (TAA)n Simple_repeat Simple_repeat 3 56 0 8 1141 478 223 39 10 chr1 72913885 72913989 -124281443 - MER3 DNA MER1_type -102 107 1 8 1141 470 281 101 109 chr1 72914524 72914920 -124280512 + Charlie5 DNA MER1_type 2231 2623 -1 8 1141 321 301 103 43 chr1 72916005 72916189 -124279243 + MIR3 SINE MIR 2 196 -12 8 1141 225 0 0 0 chr1 72916704 72916729 -124278703 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1141 29 28 0 0 chr1 72917931 72917967 -124277465 + AT_rich Low_complexity Low_complexity 1 36 0 8 1141 214 244 0 0 chr1 72918416 72918457 -124276975 + (CGTG)n Simple_repeat Simple_repeat 3 43 0 8 1141 45 19 0 0 chr1 72919059 72919111 -124276321 + AT_rich Low_complexity Low_complexity 1 52 0 8 1141 495 0 0 0 chr1 72922150 72922205 -124273227 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1141 620 250 117 17 chr1 72925921 72926100 -124269332 + B3A SINE B2 1 197 -1 8 1141 843 244 55 55 chr1 72926179 72926452 -124268980 - RCHARR1 DNA MER1_type -416 558 286 8 1141 1086 30 90 0 chr1 72926726 72926860 -124268572 - B1_Mus2 SINE Alu 0 147 2 8 1141 848 197 7 0 chr1 72926864 72927011 -124268421 - B1_Mus1 SINE Alu 0 148 1 8 1141 243 279 14 14 chr1 72927018 72927087 -124268345 + MamRep137 DNA TcMar? 27 95 -349 8 1141 3265 232 51 13 chr1 72927343 72928113 -124267319 + RCHARR1 DNA MER1_type 7 805 -169 8 1141 984 136 194 22 chr1 72928114 72928294 -124267138 - B3 SINE B2 -5 211 1 8 1141 607 155 155 42 chr1 72928468 72928636 -124266796 + RCHARR1 DNA MER1_type 787 973 -1 8 1141 1926 201 61 20 chr1 72928645 72929055 -124266377 + Lx7 LINE L1 7136 7566 -130 8 1141 333 0 0 0 chr1 72929055 72929092 -124266340 + (ATG)n Simple_repeat Simple_repeat 3 39 0 8 1141 1926 228 83 29 chr1 72929092 72929215 -124266217 + Lx7 LINE L1 7567 7648 -48 8 1141 536 42 14 0 chr1 72929638 72929709 -124265723 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 8 1141 195 42 0 0 chr1 72929893 72929917 -124265515 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 8 1141 788 309 116 45 chr1 72930122 72930390 -124265042 + B4 SINE B4 2 288 -4 8 1141 273 290 0 28 chr1 72930458 72930529 -124264903 + B1F SINE Alu 70 138 -11 8 1141 940 231 96 111 chr1 72930533 72930653 -124264779 - L1M4 LINE L1 -371 5813 5717 8 1141 989 208 43 14 chr1 72930653 72930863 -124264569 + B3 SINE B2 1 216 0 8 1141 940 231 96 111 chr1 72930863 72931282 -124264150 - L1M4 LINE L1 -468 5716 5282 8 1141 374 280 75 139 chr1 72931287 72931599 -124263833 - MLT1E1 LTR MaLR -389 291 1 8 1141 896 174 0 11 chr1 72933071 72933251 -124262181 + CT-rich Low_complexity Low_complexity 1 178 0 8 1141 192 323 115 48 chr1 72933615 72933719 -124261713 + MIRb SINE MIR 133 243 -25 8 1141 238 293 0 235 chr1 72934220 72934318 -124261114 - ID4_ SINE ID -8 75 1 8 1141 402 254 74 0 chr1 72935473 72935595 -124259837 - MER53 DNA hAT 0 193 63 8 1141 203 292 54 43 chr1 72936342 72936435 -124258997 - MER5A DNA MER1_type -76 113 20 8 1141 330 347 41 16 chr1 72936995 72937118 -124258314 + ID_B1 SINE B4 74 199 -25 8 1141 517 285 31 0 chr1 72937014 72937144 -124258288 + B1F SINE Alu 15 148 -1 8 1141 227 395 0 0 chr1 72937198 72937274 -124258158 + Tigger12c DNA MER2_type 659 734 0 8 1141 333 290 22 100 chr1 72937328 72937347 -124258085 - B2_Mm2 SINE B2 -27 168 153 8 1141 291 93 0 0 chr1 72937347 72937390 -124258042 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1141 553 290 22 100 chr1 72937390 72937550 -124257882 - B3A SINE B2 -41 157 3 8 1141 223 191 15 45 chr1 72937812 72937878 -124257554 + GA-rich Low_complexity Low_complexity 2 65 0 8 1141 559 329 32 0 chr1 72939268 72939426 -124256006 - RSINE1 SINE B4 0 165 3 8 1141 216 97 0 0 chr1 72939970 72940001 -124255431 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 8 1141 1070 97 0 20 chr1 72940140 72940288 -124255144 - B1_Mus1 SINE Alu 0 148 4 8 1141 1001 144 0 6 chr1 72940289 72940464 -124254968 + (TCC)n Simple_repeat Simple_repeat 1 174 0 8 1141 753 52 0 40 chr1 72940464 72940564 -124254868 - B2_Mm2 SINE B2 -99 96 1 8 1141 308 267 123 9 chr1 72941171 72941277 -124254155 - MLT1D LTR MaLR -53 452 335 8 1141 711 337 124 30 chr1 72941574 72941969 -124253463 + MLT1F LTR MaLR 115 546 -2 8 1141 240 100 0 0 chr1 72942156 72942196 -124253236 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 1141 305 318 100 31 chr1 72942527 72942657 -124252775 - MIRc SINE MIR -128 140 2 8 1141 389 343 14 0 chr1 72942660 72942800 -124252632 - MIRc SINE MIR -14 254 113 8 1141 241 247 65 0 chr1 72942924 72943001 -124252431 - ID4 SINE ID 0 83 2 8 1141 298 291 0 0 chr1 72943088 72943174 -124252258 - Lx7 LINE L1 0 7696 7611 8 1141 287 146 0 35 chr1 72944125 72944182 -124251250 + PB1D9 SINE Alu 5 59 -61 8 1141 427 164 0 0 chr1 72944182 72944249 -124251183 + (CAGAGA)n Simple_repeat Simple_repeat 5 71 0 8 1141 366 162 0 0 chr1 72944236 72944310 -124251122 + GA-rich Low_complexity Low_complexity 1 74 0 8 1141 438 132 66 0 chr1 72944312 72944403 -124251029 + B1_Mur3 SINE Alu 42 138 -11 8 1141 540 0 0 0 chr1 72944403 72944463 -124250969 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 8 1141 222 321 12 12 chr1 72945427 72945509 -124249923 - L3b LINE CR1 -209 273 192 8 1141 284 250 17 0 chr1 72945617 72945677 -124249755 - tRNA-Ala-GCY_ tRNA tRNA -12 63 3 8 1141 1037 269 91 37 chr1 72945877 72946282 -124249150 - Lx7 LINE L1 -377 7319 6893 8 1141 32 0 0 0 chr1 72946794 72946826 -124248606 + AT_rich Low_complexity Low_complexity 1 32 0 8 1141 725 285 25 15 chr1 72946834 72947037 -124248395 - B3 SINE B2 -10 206 2 8 1141 307 175 0 0 chr1 72947562 72947625 -124247807 + B1_Mur2 SINE Alu 73 135 -14 8 1141 360 296 35 0 chr1 72947874 72947989 -124247443 + PB1D7 SINE Alu 1 119 -1 8 1141 1101 249 74 49 chr1 72948680 72948932 -124246500 + ORR1E LTR MaLR 1 262 -97 8 1141 1560 187 265 19 chr1 72948932 72949358 -124246074 - MT2A LTR ERVL -1 532 2 8 1141 1101 249 74 49 chr1 72949358 72949455 -124245977 + ORR1E LTR MaLR 263 359 0 8 1141 246 379 63 0 chr1 72949565 72949739 -124245693 + MIRc SINE MIR 3 187 -81 8 1141 312 287 71 41 chr1 72952272 72952468 -124242964 - MIRc SINE MIR -16 252 51 8 1141 1103 89 6 16 chr1 72952632 72952814 -124242618 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 1141 438 236 13 13 chr1 72952815 72952909 -124242523 + polypyrimidine Low_complexity Low_complexity 58 152 0 8 1141 1038 122 0 16 chr1 72952909 72953092 -124242340 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 1141 438 236 13 13 chr1 72953092 72953147 -124242285 + polypyrimidine Low_complexity Low_complexity 3 57 0 8 1141 242 160 0 20 chr1 72953198 72953249 -124242183 + CT-rich Low_complexity Low_complexity 2 51 0 8 1141 218 192 0 19 chr1 72953317 72953370 -124242062 + CT-rich Low_complexity Low_complexity 3 54 0 8 1141 404 316 26 0 chr1 72953381 72953498 -124241934 - B1F2 SINE Alu -5 144 25 8 1141 194 292 0 0 chr1 72954004 72954052 -124241380 - MIR3 SINE MIR -53 155 108 8 1141 230 355 0 0 chr1 72954336 72954398 -124241034 + ID4_ SINE ID 1 62 -21 8 1141 225 0 0 0 chr1 72954405 72954430 -124241002 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1141 953 244 52 67 chr1 72955261 72955665 -124239767 + Charlie1b DNA MER1_type 90 487 -36 8 1141 476 265 95 7 chr1 72955759 72955896 -124239536 - B1F1 SINE Alu 0 149 1 8 1141 574 308 92 45 chr1 72956144 72956480 -124238952 + ORR1E LTR MaLR 6 357 -2 8 1141 301 289 26 0 chr1 72958332 72958408 -124237024 + PB1D10 SINE Alu 8 85 -32 8 1141 227 336 87 16 chr1 72958408 72958425 -124237007 + ID_B1 SINE B4 89 188 -36 8 1141 735 95 0 0 chr1 72958425 72958530 -124236902 + (TATG)n Simple_repeat Simple_repeat 4 108 0 8 1141 227 336 87 16 chr1 72958530 72958563 -124236869 + ID_B1 SINE B4 189 224 0 8 1141 310 336 35 0 chr1 72958597 72958710 -124236722 + PB1D10 SINE Alu 1 117 0 8 1141 195 284 92 33 chr1 72958737 72958857 -124236575 - L2a LINE L2 -31 3395 3269 8 1141 807 253 11 11 chr1 72958929 72959109 -124236323 + ID_B1 SINE B4 3 182 -42 8 1141 529 264 74 0 chr1 72960290 72960438 -124234994 - MIR SINE MIR -44 218 60 8 1141 218 75 50 0 chr1 72961032 72961072 -124234360 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 9 1141 255 250 0 0 chr1 72961789 72961873 -124233559 + GA-rich Low_complexity Low_complexity 1 84 0 9 1141 824 114 8 0 chr1 72961874 72962005 -124233427 + (GGA)n Simple_repeat Simple_repeat 2 133 0 9 1141 1774 174 85 8 chr1 72962034 72962399 -124233033 - MTD LTR MaLR -26 393 1 9 1141 3191 102 2 17 chr1 72962489 72962949 -124232483 + RLTR11B LTR ERVK 1 453 0 9 1141 234 0 0 0 chr1 72963502 72963528 -124231904 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 9 1141 705 202 89 6 chr1 72963541 72963720 -124231712 + MTE2a LTR MaLR 1 194 -185 9 1141 1045 286 5 91 chr1 72964252 72964648 -124230784 + MTEa LTR MaLR 14 375 -4 9 1141 468 0 0 0 chr1 72964897 72964949 -124230483 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1141 243 295 143 0 chr1 72965044 72965149 -124230283 - PB1D7 SINE Alu 0 120 1 9 1141 243 103 0 0 chr1 72965319 72965358 -124230074 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 9 1141 1050 57 7 54 chr1 72965369 72965518 -124229914 - B1_Mm SINE Alu -5 142 1 9 1141 1205 299 39 27 chr1 72965522 72965586 -124229846 - L1ME4a LINE L1 -227 5897 5832 9 1141 3147 48 2 10 chr1 72965586 72965982 -124229450 - L1Md_F2 LINE L1 -3 6579 6187 9 1141 33708 65 4 58 chr1 72965982 72967501 -124227931 - L1Md_A LINE L1 -88 5795 4279 9 1141 297 51 0 0 chr1 72967501 72967540 -124227892 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1141 1050 83 7 0 chr1 72967546 72967690 -124227742 + B1_Mus1 SINE Alu 3 147 -1 9 1141 33708 74 3 50 chr1 72967690 72971602 -124223830 - L1Md_A LINE L1 -1605 4278 403 9 1141 21 0 0 0 chr1 72971609 72971630 -124223802 + AT_rich Low_complexity Low_complexity 1 21 0 9 1141 267 375 26 46 chr1 72971783 72971934 -124223498 - RSINE1 SINE B4 -17 148 1 9 1141 813 180 6 23 chr1 72972349 72972520 -124222912 + B2_Mm2 SINE B2 1 168 -27 9 1141 771 11 0 0 chr1 72972661 72972749 -124222683 + (TTC)n Simple_repeat Simple_repeat 3 90 0 9 1141 240 277 36 0 chr1 72972771 72972814 -124222618 - MLT1A1 LTR MaLR -12 396 354 9 1141 240 35 0 0 chr1 72972814 72972843 -124222589 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1141 240 277 36 0 chr1 72972843 72972882 -124222550 - MLT1A1 LTR MaLR -55 353 312 9 1141 930 248 9 48 chr1 72975462 72975691 -124219741 - ID_B1 SINE B4 0 224 5 9 1141 257 315 154 36 chr1 72976495 72976716 -124218716 - MIR SINE MIR 0 262 16 9 1141 203 138 0 0 chr1 72977288 72977317 -124218115 + (GAA)n Simple_repeat Simple_repeat 2 30 0 9 1141 655 232 0 21 chr1 72977821 72977966 -124217466 + ID_B1 SINE B4 80 221 -3 9 1141 396 200 0 0 chr1 72978644 72978719 -124216713 + ID4_ SINE ID 2 76 -7 9 1141 381 22 0 0 chr1 72978745 72978791 -124216641 + (CAAAT)n Simple_repeat Simple_repeat 2 47 0 9 1141 1269 147 65 23 chr1 72979000 72979216 -124216216 + URR1B DNA MER1_type 1 225 0 9 1141 340 286 21 21 chr1 72980062 72980155 -124215277 + RSINE1 SINE B4 2 94 -71 9 1141 2342 29 88 16 chr1 72980334 72980620 -124214812 + L1Md_F3 LINE L1 6244 6550 -34 9 1141 180 0 0 0 chr1 72980620 72980640 -124214792 + (TAA)n Simple_repeat Simple_repeat 2 21 0 9 1141 2342 29 88 16 chr1 72980640 72980671 -124214761 + L1Md_F3 LINE L1 6551 6584 0 9 1141 294 229 0 16 chr1 72981171 72981353 -124214079 + CT-rich Low_complexity Low_complexity 2 180 0 9 1141 183 42 0 0 chr1 72981368 72981392 -124214040 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 9 1141 261 0 0 0 chr1 72982407 72982436 -124212996 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1141 546 296 59 0 chr1 72982453 72982588 -124212844 - RSINE1 SINE B4 -20 145 3 9 1141 330 236 180 0 chr1 72983116 72983205 -124212227 - B1F2 SINE Alu -8 141 37 9 1141 219 88 0 0 chr1 72983611 72983645 -124211787 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1141 800 253 33 11 chr1 72983985 72984169 -124211263 - ID_B1 SINE B4 -36 188 1 9 1141 213 250 0 0 chr1 72984170 72984218 -124211214 + T-rich Low_complexity Low_complexity 1 48 0 9 1141 273 345 8 50 chr1 72984283 72984402 -124211030 - PB1D10 SINE Alu -1 116 3 9 1141 474 215 0 0 chr1 72984526 72984619 -124210813 + ID_B1 SINE B4 132 224 0 9 1141 249 319 166 64 chr1 72984940 72985205 -124210227 + B4 SINE B4 1 292 0 9 1141 383 344 95 18 chr1 72985222 72985444 -124209988 - MER31B LTR ERV1 -227 239 1 9 1141 474 65 0 0 chr1 72985745 72985807 -124209625 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1141 1299 128 47 9 chr1 72986418 72986631 -124208801 + URR1B DNA MER1_type 5 225 0 9 1141 549 198 214 31 chr1 72987280 72987509 -124207923 + Lx7 LINE L1 7211 7481 -215 9 1141 720 189 0 0 chr1 72987513 72987656 -124207776 + CT-rich Low_complexity Low_complexity 3 145 0 9 1141 1397 103 0 25 chr1 72987658 72987857 -124207575 - B2_Mm2 SINE B2 -1 194 1 9 1141 245 271 98 8 chr1 72987895 72988018 -124207414 + Lx7 LINE L1 7563 7696 0 9 1141 359 288 75 15 chr1 72988097 72988231 -124207201 - B1F2 SINE Alu -5 144 3 9 1141 618 221 0 8 chr1 72988238 72988366 -124207066 - B1F1 SINE Alu 0 149 23 9 1141 2000 177 189 25 chr1 72988694 72989203 -124206229 - RMER19B LTR ERVK -1 901 310 9 1141 271 253 37 25 chr1 72989318 72989399 -124206033 + PB1D10 SINE Alu 26 107 -10 9 1141 2330 148 3 14 chr1 72989683 72990054 -124205378 + ORR1B2 LTR MaLR 1 367 0 9 1141 954 264 139 67 chr1 72990555 72990842 -124204590 + L1MD1 LINE L1 5598 5884 -358 9 1141 302 246 0 0 chr1 72990842 72990911 -124204521 - ID2 SINE ID -13 70 2 9 1141 954 264 139 67 chr1 72990911 72991219 -124204213 + L1MD1 LINE L1 5885 6236 -6 9 1141 339 297 0 35 chr1 72991390 72991505 -124203927 - PB1D10 SINE Alu 0 117 7 9 1141 694 283 0 6 chr1 72991425 72991592 -124203840 - ID_B1 SINE B4 -57 167 2 9 1141 242 29 0 28 chr1 72993466 72993502 -124201930 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1141 229 262 0 16 chr1 72993641 72993703 -124201729 + ID SINE ID 24 84 -140 9 1141 706 196 27 34 chr1 72994016 72994164 -124201268 + B1_Mur2 SINE Alu 2 148 -1 9 1141 318 352 16 24 chr1 72994399 72994524 -124200908 - MIRb SINE MIR -120 148 25 9 1141 21 36 0 0 chr1 72994720 72994748 -124200684 + AT_rich Low_complexity Low_complexity 1 28 0 9 1141 275 136 17 0 chr1 72995848 72995907 -124199525 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 9 1141 318 393 0 17 chr1 72995911 72996087 -124199345 + (CCCA)n Simple_repeat Simple_repeat 3 175 0 9 1141 250 204 43 21 chr1 72996119 72996259 -124199173 + (TCCA)n Simple_repeat Simple_repeat 1 143 0 9 1141 696 24 0 0 chr1 72996271 72996353 -124199079 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 9 1141 304 288 0 0 chr1 72997530 72997610 -124197822 - ID4_ SINE ID -2 81 2 9 1141 1674 207 113 8 chr1 72998989 72999368 -124196064 + MTD LTR MaLR 1 419 0 9 1141 186 43 0 0 chr1 73000146 73000169 -124195263 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 1 1141 406 267 89 0 chr1 73000624 73000725 -124194707 - RSINE1 SINE B4 -21 144 35 2 1141 279 254 14 0 chr1 73000986 73001057 -124194375 + MIRc SINE MIR 92 163 -105 3 1141 183 42 0 0 chr1 73001188 73001212 -124194220 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1141 1161 55 0 14 chr1 73001214 73001362 -124194070 - B1_Mm SINE Alu 0 147 2 5 1141 1273 135 86 14 chr1 73001758 73001968 -124193464 + URR1B DNA MER1_type 1 225 0 6 1141 279 268 88 49 chr1 73002013 73002115 -124193317 - MLT1G3 LTR MaLR -38 557 452 7 1141 256 364 65 11 chr1 73002254 73002440 -124192992 - MLT1G3 LTR MaLR -302 277 82 7 1141 291 85 0 0 chr1 73004485 73004532 -124190900 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1141 282 295 34 11 chr1 73005523 73005612 -124189820 + MLT1A1 LTR MaLR 36 126 -282 9 1141 1235 242 28 71 chr1 73005709 73006105 -124189327 + MTEa LTR MaLR 1 379 0 1 1141 519 45 0 0 chr1 73006316 73006382 -124189050 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1141 477 200 42 10 chr1 73006404 73006500 -124188932 - B3A SINE B2 -86 112 14 1 1141 428 266 38 23 chr1 73006523 73006654 -124188778 + MER58B DNA MER1_type 109 241 -100 1 1142 450 252 45 0 chr1 73007584 73007695 -124187737 + PB1D10 SINE Alu 1 116 -1 1 1142 30 0 0 0 chr1 73007801 73007831 -124187601 + AT_rich Low_complexity Low_complexity 1 30 0 1 1142 280 246 16 0 chr1 73007831 73007845 -124187587 - ID4 SINE ID 0 83 22 1 1142 282 191 0 0 chr1 73007845 73007892 -124187540 - ID SINE ID -155 69 23 1 1142 1672 29 9 24 chr1 73008633 73008846 -124186586 - L1Md_F3 LINE L1 0 6584 6375 1 1142 369 311 89 57 chr1 73008956 73009236 -124186196 - ORR1E LTR MaLR -10 349 61 1 1142 200 233 0 32 chr1 73009397 73009459 -124185973 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 2 1142 372 248 28 28 chr1 73009728 73009836 -124185596 - PB1D10 SINE Alu -5 112 5 2 1142 384 22 0 0 chr1 73011011 73011056 -124184376 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1142 324 0 0 0 chr1 73011056 73011092 -124184340 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1142 506 267 164 11 chr1 73011117 73011306 -124184126 - B4A SINE B4 -65 227 10 2 1142 185 65 32 0 chr1 73011372 73011403 -124184029 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1142 1417 98 0 5 chr1 73012174 73012368 -124183064 - B2_Mm2 SINE B2 0 195 3 2 1142 405 0 0 0 chr1 73012433 73012478 -124182954 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1142 509 195 177 8 chr1 73012577 73012701 -124182731 - B1_Mus2 SINE Alu -1 146 2 2 1142 858 211 135 0 chr1 73013782 73013967 -124181465 + B3 SINE B2 1 210 -6 2 1142 285 151 0 0 chr1 73014599 73014652 -124180780 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1142 245 218 0 18 chr1 73014744 73014800 -124180632 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 1142 477 0 0 0 chr1 73015625 73015678 -124179754 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1142 234 0 0 0 chr1 73016006 73016032 -124179400 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 1142 265 62 61 30 chr1 73016482 73016548 -124178884 + A-rich Low_complexity Low_complexity 5 72 0 3 1142 423 0 0 0 chr1 73016696 73016743 -124178689 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 3 1142 390 184 0 0 chr1 73016917 73016993 -124178439 + CT-rich Low_complexity Low_complexity 1 76 0 3 1142 277 230 24 98 chr1 73017004 73017086 -124178346 - ID4_ SINE ID -3 80 5 3 1142 325 229 86 0 chr1 73017168 73017273 -124178159 - B1F1 SINE Alu -35 114 1 3 1142 817 235 128 66 chr1 73018733 73019006 -124176426 - B4 SINE B4 0 292 3 3 1142 295 252 85 54 chr1 73019711 73019841 -124175591 - MER5A DNA MER1_type 0 189 56 4 1142 561 83 0 0 chr1 73020113 73020197 -124175235 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1142 420 341 133 14 chr1 73020204 73020549 -124174883 - LTR82A LTR ERVL -235 637 252 4 1142 387 0 0 0 chr1 73021685 73021728 -124173704 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1142 24 32 0 0 chr1 73022034 73022065 -124173367 + AT_rich Low_complexity Low_complexity 1 31 0 4 1142 260 172 43 75 chr1 73022150 73022244 -124173188 + A-rich Low_complexity Low_complexity 1 91 0 4 1142 345 264 26 35 chr1 73022264 73022378 -124173054 - Lx7 LINE L1 -366 7330 7218 4 1142 240 35 0 0 chr1 73022436 73022465 -124172967 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4 1142 355 191 181 24 chr1 73022467 73022594 -124172838 - Lx6 LINE L1 -169 7291 7183 4 1142 253 295 7 54 chr1 73022594 73022741 -124172691 + (CATATA)n Simple_repeat Simple_repeat 1 140 0 4 1142 483 270 0 35 chr1 73023262 73023404 -124172028 - B3 SINE B2 -79 137 1 5 1142 408 219 63 14 chr1 73024369 73024557 -124170875 + L1MB1 LINE L1 5748 5968 -332 5 1142 291 359 23 15 chr1 73024995 73025128 -124170304 + B1F1 SINE Alu 6 139 -10 5 1142 226 268 18 0 chr1 73025156 73025212 -124170220 + ID4_ SINE ID 27 83 0 5 1142 443 341 75 35 chr1 73025271 73025499 -124169933 + LTR16E1 LTR ERVL 285 521 -17 5 1142 1043 175 94 33 chr1 73025921 73026134 -124169298 - URR1A DNA MER1_type 0 226 1 5 1142 1467 142 187 28 chr1 73026378 73026667 -124168765 + Lx5 LINE L1 6716 7050 0 5 1142 265 354 20 39 chr1 73027042 73027195 -124168237 + ERVL-E-int LTR ERVL 4862 5011 -656 5 1142 1606 211 41 3 chr1 73027445 73027788 -124167644 + ORR1D1 LTR MaLR 3 358 -16 5 1142 324 285 84 110 chr1 73027905 73028059 -124167373 - LTR33 LTR ERVL -341 174 25 5 1142 989 103 23 0 chr1 73028488 73028663 -124166769 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1142 2078 125 21 12 chr1 73028921 73029246 -124166186 - ORR1A4 LTR MaLR 0 329 2 6 1142 345 24 0 0 chr1 73029404 73029446 -124165986 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 6 1142 568 288 101 60 chr1 73029813 73030106 -124165326 + MLT1A0 LTR MaLR 5 301 -64 6 1142 3159 127 45 34 chr1 73030106 73030661 -124164771 - RLTR31_Mm LTR ERVK 0 561 1 6 1142 568 288 101 60 chr1 73030661 73030714 -124164718 + MLT1A0 LTR MaLR 302 365 0 6 1142 297 263 0 40 chr1 73032453 73032552 -124162880 - MER102a DNA MER1_type -25 305 218 6 1142 198 323 0 0 chr1 73032622 73032687 -124162745 - L2c LINE L2 -8 3379 3315 6 1142 528 276 24 0 chr1 73032705 73032832 -124162600 - MER102a DNA MER1_type -205 125 1 6 1142 397 272 30 53 chr1 73033432 73033564 -124161868 - MLT1J1 LTR MaLR -312 132 4 6 1142 584 310 0 54 chr1 73033654 73033821 -124161611 + RSINE1 SINE B4 8 165 0 6 1142 199 333 85 30 chr1 73033949 73034113 -124161319 + MIRc SINE MIR 24 196 -72 6 1142 455 192 13 0 chr1 73034404 73034482 -124160950 + ID4 SINE ID 4 82 -1 7 1142 1486 306 99 75 chr1 73034768 73035407 -124160025 + ORR1E-int LTR MaLR 743 1401 -179 7 1142 548 14 14 0 chr1 73035407 73035476 -124159956 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1142 1486 306 99 75 chr1 73035476 73035626 -124159806 + ORR1E-int LTR MaLR 1402 1551 -29 7 1142 389 258 87 35 chr1 73035609 73035782 -124159650 + ORR1E LTR MaLR 8 189 -170 7 1142 447 113 0 0 chr1 73036017 73036088 -124159344 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1142 450 0 0 0 chr1 73036088 73036137 -124159295 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1142 2306 145 51 0 chr1 73036382 73036775 -124158657 - MTC LTR MaLR -8 413 1 7 1142 201 39 0 0 chr1 73037472 73037498 -124157934 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1142 205 228 175 0 chr1 73037962 73038019 -124157413 - MIRb SINE MIR -75 193 127 7 1142 1339 195 235 20 chr1 73038203 73038659 -124156773 - RMER15 LTR ERVL 0 575 22 7 1142 275 401 14 0 chr1 73039417 73039559 -124155873 - MIRb SINE MIR -120 148 5 7 1142 1543 309 93 27 chr1 73040569 73040923 -124154509 - Lx8 LINE L1 -73 7400 6997 8 1142 2136 163 43 13 chr1 73040923 73041296 -124154136 + ORR1C2 LTR MaLR 1 384 0 8 1142 1543 309 93 27 chr1 73041296 73041405 -124154027 - Lx8 LINE L1 -477 6996 6888 8 1142 1486 226 18 57 chr1 73041405 73041790 -124153642 + ORR1D1 LTR MaLR 1 370 -4 8 1142 1543 309 93 27 chr1 73041790 73041983 -124153449 - Lx8 LINE L1 -586 6887 6700 8 1142 2216 171 8 0 chr1 73042236 73042599 -124152833 + ORR1B2 LTR MaLR 1 366 -1 8 1142 3134 158 83 15 chr1 73042600 73043254 -124152178 + ORR1B2-int LTR MaLR 1 698 -811 8 1142 299 154 19 0 chr1 73043215 73043267 -124152165 + B1_Mur4 SINE Alu 13 65 -85 8 1142 414 53 0 0 chr1 73043266 73043323 -124152109 + ORR1B1 LTR MaLR 330 386 -8 8 1142 222 224 0 0 chr1 73043629 73043659 -124151773 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 8 1142 588 121 0 0 chr1 73043659 73043750 -124151682 + (TA)n Simple_repeat Simple_repeat 1 91 0 8 1142 222 224 0 0 chr1 73043750 73043786 -124151646 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 8 1142 3019 73 22 8 chr1 73044559 73044960 -124150472 + MTB_Mm LTR MaLR 1 407 0 8 1142 27 62 0 0 chr1 73045109 73045157 -124150275 + AT_rich Low_complexity Low_complexity 1 48 0 9 1142 549 247 12 61 chr1 73045591 73045755 -124149677 - L1MA4 LINE L1 -397 5903 5748 9 1142 2263 182 42 110 chr1 73045755 73046371 -124149061 - RMER20B LTR ERVK -21 606 33 9 1142 337 280 102 27 chr1 73046373 73046520 -124148912 - L1MA4 LINE L1 -557 5734 5577 9 1142 3661 43 0 11 chr1 73046732 73047180 -124148252 - L1Md_F2 LINE L1 -8 6574 6132 9 1142 189 0 0 0 chr1 73047719 73047740 -124147692 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1142 251 276 13 13 chr1 73047787 73047864 -124147568 - ID4 SINE ID 0 83 7 9 1142 240 277 56 48 chr1 73047961 73048086 -124147346 - MER58B DNA MER1_type -160 181 56 9 1142 258 32 0 0 chr1 73048108 73048139 -124147293 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1142 245 261 15 0 chr1 73049421 73049486 -124145946 + (CAGA)n Simple_repeat Simple_repeat 2 67 0 9 1142 258 254 58 29 chr1 73049630 73049699 -124145733 - ORR1D2 LTR MaLR -294 76 6 9 1142 636 306 28 75 chr1 73050378 73050696 -124144736 - Lx8 LINE L1 -8 7465 7163 1 1142 219 186 0 0 chr1 73050712 73050755 -124144677 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1142 700 288 80 17 chr1 73051108 73051345 -124144087 + B4A SINE B4 1 252 -40 1 1142 381 276 39 23 chr1 73052316 73052500 -124142932 - MIRb SINE MIR -51 217 27 1 1142 491 293 35 14 chr1 73053012 73053154 -124142278 + ID_B1 SINE B4 80 224 0 1 1142 299 257 0 14 chr1 73053166 73053237 -124142195 + RSINE1 SINE B4 4 73 -92 1 1142 1289 268 19 3 chr1 73053754 73054065 -124141367 - MTEa LTR MaLR -45 334 19 1 1142 3914 21 5 0 chr1 73054116 73054550 -124140882 - RLTR10C LTR ERVK 0 436 1 1 1142 507 298 16 122 chr1 73055462 73055783 -124139649 - MLT1E1A LTR MaLR -5 675 389 1 1142 2809 42 128 8 chr1 73055992 73056352 -124139080 + L1Md_F2 LINE L1 6168 6570 -12 1 1142 242 209 0 0 chr1 73056600 73056643 -124138789 - PB1D9 SINE Alu -76 44 2 1 1142 1212 94 18 0 chr1 73056989 73057160 -124138272 - B2_Mm1t SINE B2 -18 175 2 1 1142 411 239 145 1 chr1 73057350 73057468 -124137964 - MLT1E1A LTR MaLR -330 137 6 1 1142 335 306 118 39 chr1 73058233 73058386 -124137046 + B4 SINE B4 34 198 -94 1 1142 590 217 27 55 chr1 73058287 73058433 -124136999 + B1F SINE Alu 7 148 -1 1 1142 251 195 130 130 chr1 73058675 73058775 -124136657 - MLT1A0 LTR MaLR -93 315 216 1 1142 287 275 58 0 chr1 73058832 73058901 -124136531 - MLT1A0 LTR MaLR -291 74 2 1 1142 367 192 81 14 chr1 73059105 73059179 -124136253 - RSINE1 SINE B4 -75 90 12 1 1142 319 131 15 62 chr1 73061020 73061085 -124134347 - ORR1B1-int LTR MaLR -219 1290 1229 1 1142 1034 97 14 0 chr1 73061982 73062127 -124133305 + B1_Mus1 SINE Alu 2 148 0 1 1142 290 351 86 17 chr1 73062888 73063062 -124132370 - MER20 DNA MER1_type -6 213 28 1 1142 1304 207 126 19 chr1 73063190 73063550 -124131882 + Lx4A LINE L1 6575 7057 -1 1 1142 188 322 112 22 chr1 73065390 73065479 -124129953 + L2 LINE L2 2683 2779 -640 1 1142 255 61 0 0 chr1 73067993 73068026 -124127406 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1 1142 5902 42 30 0 chr1 73068132 73068843 -124126589 - L1Md_T LINE L1 -29 6553 5822 1 1142 213 39 0 0 chr1 73068846 73068872 -124126560 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1142 1280 68 61 22 chr1 73070328 73070508 -124124924 - B2_Mm2 SINE B2 -8 187 1 1 1142 386 314 25 31 chr1 73072758 73072919 -124122513 + B4A SINE B4 1 160 -132 1 1142 1809 245 73 17 chr1 73073426 73073904 -124121528 - RMER20A LTR ERVK -1 515 11 1 1142 509 0 16 0 chr1 73073965 73074026 -124121406 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1142 629 316 49 8 chr1 73074648 73074894 -124120538 + Lx7 LINE L1 7023 7278 -418 1 1142 423 0 0 0 chr1 73074914 73074961 -124120471 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1142 180 0 0 0 chr1 73074961 73074980 -124120452 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1142 318 50 0 0 chr1 73076814 73076854 -124118578 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 1 1142 675 92 0 0 chr1 73077089 73077198 -124118234 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 1142 23 0 0 0 chr1 73077275 73077298 -124118134 + AT_rich Low_complexity Low_complexity 1 23 0 1 1142 201 139 0 0 chr1 73077347 73077390 -124118042 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1142 248 333 44 26 chr1 73077414 73077528 -124117904 - L1M5 LINE L1 -483 5641 5526 1 1142 3088 69 2 2 chr1 73077808 73078201 -124117231 + MTB_Mm LTR MaLR 1 393 -14 1 1142 696 305 165 26 chr1 73078207 73078591 -124116841 + Tigger7 DNA MER2_type 60 418 -2073 1 1142 272 280 179 33 chr1 73079068 73079308 -124116124 - B4A SINE B4 -16 276 2 1 1142 363 226 36 81 chr1 73079823 73079934 -124115498 + RCHARR1 DNA MER1_type 83 188 -786 1 1142 225 94 0 0 chr1 73079937 73079969 -124115463 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 1142 462 65 0 0 chr1 73079981 73080043 -124115389 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 1142 910 57 82 0 chr1 73080070 73080192 -124115240 - B2_Mm2 SINE B2 -62 133 2 1 1142 2569 228 88 11 chr1 73080194 73080843 -124114589 + RCHARR1 DNA MER1_type 196 894 -80 1 1142 676 255 18 58 chr1 73080874 73081045 -124114387 - RSINE1 SINE B4 0 165 2 1 1142 287 253 119 12 chr1 73081045 73081129 -124114303 + RCHARR1 DNA MER1_type 882 974 0 1 1142 240 292 15 0 chr1 73081481 73081546 -124113886 + ID SINE ID 2 67 -157 1 1142 501 47 0 0 chr1 73081565 73081629 -124113803 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1142 622 168 94 51 chr1 73081771 73081909 -124113523 - B1_Mus1 SINE Alu -4 144 1 1 1142 226 337 40 10 chr1 73081924 73082023 -124113409 - PB1D7 SINE Alu -18 102 1 1 1142 566 295 2 22 chr1 73082023 73082109 -124113323 - B4A SINE B4 -145 79 3 1 1142 964 236 183 7 chr1 73082123 73082396 -124113036 + MTD LTR MaLR 13 333 -86 1 1142 274 229 93 73 chr1 73083871 73083995 -124111437 + PB1D10 SINE Alu 1 116 -1 1 1142 1063 271 66 15 chr1 73084017 73084276 -124111156 + B4 SINE B4 17 288 -4 1 1142 597 14 0 0 chr1 73086013 73086083 -124109349 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1142 576 260 124 24 chr1 73086122 73086331 -124109101 - MTE2b LTR MaLR -149 230 1 1 1142 540 0 0 0 chr1 73087093 73087153 -124108279 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1142 349 335 76 38 chr1 73088145 73088356 -124107076 + MER63D DNA AcHobo 821 1039 -22 1 1142 860 270 29 57 chr1 73089273 73089552 -124105880 + B4A SINE B4 4 274 -18 1 1142 279 54 0 0 chr1 73089562 73089599 -124105833 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1142 396 0 0 0 chr1 73089599 73089643 -124105789 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1 1142 515 245 98 44 chr1 73089893 73089905 -124105527 + CYRA11_Mm Unknown Y-chromosome 159 254 -363 1 1142 1152 128 6 6 chr1 73089905 73090086 -124105346 - URR1B DNA MER1_type 0 225 45 1 1142 515 245 98 44 chr1 73090086 73090098 -124105334 + CYRA11_Mm Unknown Y-chromosome 255 374 -243 1 1142 423 300 93 12 chr1 73091085 73091247 -124104185 + MER53 DNA hAT 13 187 -6 1 1142 227 189 19 0 chr1 73093192 73093245 -124102187 + GA-rich Low_complexity Low_complexity 1 54 0 1 1142 213 121 0 0 chr1 73093274 73093307 -124102125 + (GGA)n Simple_repeat Simple_repeat 3 35 0 1 1142 252 0 0 0 chr1 73093654 73093682 -124101750 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1142 1033 241 53 37 chr1 73093697 73093943 -124101489 - B4 SINE B4 -16 276 27 1 1142 218 304 69 46 chr1 73095205 73095336 -124100096 - MIR3 SINE MIR -52 156 23 1 1142 234 296 97 44 chr1 73095408 73095444 -124099988 + YREP_Mm Unknown Unknown 182 224 -1588 1 1142 1298 158 13 9 chr1 73095444 73095668 -124099764 - URR1A DNA MER1_type 0 226 2 1 1142 234 296 97 44 chr1 73095668 73095744 -124099688 + YREP_Mm Unknown Unknown 225 300 -1512 1 1142 254 300 17 0 chr1 73095699 73095759 -124099673 - B1_Mus1 SINE Alu -87 61 1 1 1142 1760 205 0 9 chr1 73096137 73096452 -124098980 - MTD LTR MaLR -96 323 12 1 1142 293 274 67 109 chr1 73097418 73097537 -124097895 - MLT1A1 LTR MaLR 0 408 295 1 1142 24 32 0 0 chr1 73097738 73097769 -124097663 + AT_rich Low_complexity Low_complexity 1 31 0 1 1142 3459 260 85 26 chr1 73097936 73098050 -124097382 - RMER1B Other Other -3 1063 938 1 1142 498 46 0 0 chr1 73098050 73098115 -124097317 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1142 3459 260 85 26 chr1 73098115 73099004 -124096428 - RMER1B Other Other -129 937 2 1 1142 186 208 0 0 chr1 73099297 73099345 -124096087 + (CACG)n Simple_repeat Simple_repeat 4 51 0 1 1142 323 294 91 9 chr1 73099348 73099458 -124095974 + MER5B DNA MER1_type 59 177 -1 1 1142 264 327 67 0 chr1 73099639 73099743 -124095689 + MLT1F2 LTR MaLR 31 141 -419 1 1142 250 278 227 45 chr1 73099905 73100037 -124095395 + MLT1F2 LTR MaLR 498 653 0 1 1142 234 381 63 19 chr1 73100044 73100202 -124095230 + MIRb SINE MIR 14 178 -90 1 1142 241 345 147 28 chr1 73100522 73100758 -124094674 - MIRb SINE MIR -3 265 1 1 1142 652 180 12 0 chr1 73101022 73101183 -124094249 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1142 225 270 136 62 chr1 73101231 73101393 -124094039 - RLTR40 LTR ERVK -173 644 471 1 1142 342 0 0 0 chr1 73102359 73102397 -124093035 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1142 351 0 0 0 chr1 73102397 73102436 -124092996 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1142 283 303 19 58 chr1 73102647 73102801 -124092631 - MIR3 SINE MIR -4 204 57 1 1142 37 23 0 0 chr1 73105115 73105159 -124090273 + AT_rich Low_complexity Low_complexity 1 44 0 1 1142 237 238 24 8 chr1 73105338 73105413 -124090019 + CT-rich Low_complexity Low_complexity 1 76 0 1 1142 237 288 27 0 chr1 73106012 73106085 -124089347 + (TATG)n Simple_repeat Simple_repeat 1 75 0 1 1142 730 253 6 31 chr1 73106133 73106296 -124089136 - B4 SINE B4 -131 161 3 1 1142 301 31 43 58 chr1 73106658 73106727 -124088705 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 1 1142 507 263 17 8 chr1 73107488 73107607 -124087825 + B4A SINE B4 1 120 -172 1 1142 200 182 36 18 chr1 73107710 73107766 -124087666 + CT-rich Low_complexity Low_complexity 1 57 0 1 1142 277 0 94 0 chr1 73107766 73107819 -124087613 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1142 459 0 0 0 chr1 73107819 73107869 -124087563 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1142 264 122 0 0 chr1 73107874 73107915 -124087517 + (GGGGA)n Simple_repeat Simple_repeat 5 45 0 1 1142 664 211 17 55 chr1 73108222 73108403 -124087029 - MER121 Unknown Unknown -121 291 118 1 1142 558 240 65 16 chr1 73109048 73109171 -124086261 - RSINE1 SINE B4 -34 131 3 1 1142 1158 285 137 10 chr1 73110114 73110610 -124084822 - Lx8 LINE L1 -26 7447 6889 1 1142 2006 136 76 55 chr1 73111839 73112206 -124083226 - ORR1C1 LTR MaLR -3 375 1 1 1142 477 270 39 48 chr1 73112538 73112555 -124082877 - ID_B1 SINE B4 -48 244 190 1 1142 530 206 60 15 chr1 73112555 73112688 -124082744 - B1F SINE Alu -1 148 10 2 1142 477 270 39 48 chr1 73112688 73112725 -124082707 - ID_B1 SINE B4 -48 189 56 1 1142 248 322 81 41 chr1 73112972 73113095 -124082337 + LTR16A LTR ERVL 64 191 -260 2 1142 211 284 16 13 chr1 73113522 73113597 -124081835 + L2b LINE L2 3010 3083 -343 2 1142 2275 67 0 0 chr1 73113752 73114037 -124081395 - L1Md_F2 LINE L1 -1216 4667 4383 2 1142 7415 48 2 4 chr1 73114037 73114940 -124080492 + L1Md_F2 LINE L1 4686 5586 -297 2 1142 8001 55 1 14 chr1 73114940 73115949 -124079483 + L1Md_F2 LINE L1 5587 6582 0 2 1142 1334 66 6 18 chr1 73116310 73116650 -124078782 + (TTTC)n Simple_repeat Simple_repeat 1 335 0 2 1142 309 239 56 11 chr1 73117308 73117397 -124078035 + B4A SINE B4 2 94 -198 2 1142 827 248 99 14 chr1 73117417 73117638 -124077794 + RLTR18 LTR ERVK 2 241 -375 2 1142 207 162 0 0 chr1 73119874 73119911 -124075521 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 2 1142 213 276 17 17 chr1 73119917 73119976 -124075456 - ID4_ SINE ID -13 70 12 2 1142 405 299 21 35 chr1 73120260 73120402 -124075030 - MIR SINE MIR -19 243 104 2 1142 217 333 29 14 chr1 73120526 73120596 -124074836 + B4A SINE B4 8 78 -214 2 1142 363 34 0 131 chr1 73122958 73123095 -124072337 + (CTGGGG)n Simple_repeat Simple_repeat 6 124 0 2 1142 249 310 8 50 chr1 73123634 73123753 -124071679 + MER3 DNA MER1_type 73 186 -23 2 1142 577 273 0 8 chr1 73124048 73124181 -124071251 - ID_B1 SINE B4 -7 217 86 2 1142 288 0 0 0 chr1 73125850 73125882 -124069550 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1142 366 254 15 45 chr1 73127520 73127652 -124067780 + CT-rich Low_complexity Low_complexity 2 129 0 2 1142 375 345 38 22 chr1 73128108 73128292 -124067140 - MER5A DNA MER1_type -2 187 1 2 1142 432 0 0 0 chr1 73128661 73128709 -124066723 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1142 669 184 121 4 chr1 73128709 73128859 -124066573 - ORR1B2 LTR MaLR -203 175 1 2 1142 710 204 36 0 chr1 73128988 73129125 -124066307 + B3 SINE B2 1 142 -74 2 1142 187 217 16 16 chr1 73129205 73129266 -124066166 + GA-rich Low_complexity Low_complexity 4 64 0 2 1142 506 283 104 52 chr1 73129509 73130070 -124065362 + L1ME3B LINE L1 5434 6023 -217 2 1142 398 270 26 98 chr1 73131034 73131238 -124064194 - MER57C2 LTR ERV1 -56 378 167 2 1142 871 150 113 27 chr1 73132682 73132867 -124062565 + ORR1B2 LTR MaLR 1 201 -166 2 1142 288 77 0 0 chr1 73134007 73134046 -124061386 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2 1142 192 77 0 0 chr1 73134058 73134084 -124061348 + (TCC)n Simple_repeat Simple_repeat 3 28 0 2 1142 373 284 217 68 chr1 73134127 73134196 -124061236 - B4A SINE B4 -4 288 225 2 1142 213 39 0 0 chr1 73134196 73134222 -124061210 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1142 373 284 217 68 chr1 73134222 73134401 -124061031 - B4A SINE B4 -68 224 4 2 1142 305 70 0 0 chr1 73134598 73134641 -124060791 - B1_Mur4 SINE Alu -8 142 100 2 1142 308 224 0 0 chr1 73135520 73135587 -124059845 - ID4 SINE ID -16 67 1 2 1142 293 261 0 55 chr1 73135710 73135783 -124059649 - ID4 SINE ID 0 83 15 2 1142 330 87 0 0 chr1 73137380 73137426 -124058006 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1142 729 291 43 83 chr1 73137453 73137679 -124057753 - B4 SINE B4 -3 289 78 2 1142 1259 4 43 0 chr1 73137679 73137932 -124057500 + (TCTA)n Simple_repeat Simple_repeat 1 264 0 2 1142 729 291 43 83 chr1 73137932 73138004 -124057428 - B4 SINE B4 -215 77 3 2 1143 1037 108 18 0 chr1 73138896 73139062 -124056370 + URR1A DNA MER1_type 58 226 0 2 1143 362 267 30 0 chr1 73139305 73139406 -124056026 + B1F SINE Alu 46 149 0 2 1143 23 0 0 0 chr1 73139406 73139429 -124056003 + AT_rich Low_complexity Low_complexity 1 23 0 2 1143 665 250 145 9 chr1 73139436 73139650 -124055782 + Lx8 LINE L1 6777 7019 -454 2 1143 546 238 91 19 chr1 73139667 73139821 -124055611 + Lx8 LINE L1 7062 7226 -247 2 1143 260 321 12 0 chr1 73139849 73139933 -124055499 + RMER15 LTR ERVL 377 461 -114 2 1143 298 254 144 22 chr1 73140183 73140364 -124055068 - BLACKJACK DNA AcHobo -402 2542 2340 2 1143 522 46 0 0 chr1 73140609 73140674 -124054758 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1143 333 299 34 0 chr1 73140692 73140809 -124054623 - Lx9 LINE L1 -208 7436 7316 2 1143 2302 242 58 24 chr1 73140817 73141700 -124053732 + Lx9 LINE L1 4979 5966 -1678 2 1143 1786 281 29 18 chr1 73141848 73142362 -124053070 + Lx9 LINE L1 6450 6969 -675 2 1143 284 333 0 0 chr1 73142412 73142511 -124052921 - BLACKJACK DNA AcHobo -775 2169 2071 2 1143 723 263 22 6 chr1 73142511 73142691 -124052741 + B3 SINE B2 17 199 -17 2 1143 189 107 0 0 chr1 73142692 73142720 -124052712 + (ATAAG)n Simple_repeat Simple_repeat 3 30 0 2 1143 3902 52 2 6 chr1 73142739 73143225 -124052207 + L1Md_F2 LINE L1 6098 6581 -1 2 1143 304 339 46 21 chr1 73143274 73143557 -124051875 - BLACKJACK DNA AcHobo -871 2073 1784 2 1143 452 268 7 98 chr1 73143636 73143789 -124051643 - RSINE1 SINE B4 0 165 27 2 1143 364 302 68 56 chr1 73143807 73144056 -124051376 - BLACKJACK DNA AcHobo -1231 1713 1462 2 1143 4326 120 112 34 chr1 73144103 73144524 -124050908 - Lx LINE L1 -7 6647 6247 2 1143 240 35 0 0 chr1 73144524 73144553 -124050879 + (C)n Simple_repeat Simple_repeat 1 29 0 2 1143 4326 120 112 34 chr1 73144553 73144890 -124050542 - Lx LINE L1 -408 6246 5830 2 1143 685 282 206 34 chr1 73144903 73145207 -124050225 - BLACKJACK DNA AcHobo -1493 1451 1133 2 1143 207 0 0 0 chr1 73145207 73145230 -124050202 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1143 685 282 206 34 chr1 73145230 73145479 -124049953 - BLACKJACK DNA AcHobo -1812 1132 804 2 1143 387 367 43 60 chr1 73145813 73146045 -124049387 + Tigger5 DNA MER2_type 2 229 -2177 2 1143 322 322 0 0 chr1 73146056 73146146 -124049286 + Tigger5 DNA MER2_type 2296 2385 -21 2 1143 1224 287 15 12 chr1 73146157 73146334 -124049098 + MTE2b LTR MaLR 1 182 -197 2 1143 1983 191 44 7 chr1 73146334 73146740 -124048692 + MTC LTR MaLR 1 421 0 2 1143 1224 287 15 12 chr1 73146740 73146901 -124048531 + MTE2b LTR MaLR 183 339 -40 2 1143 276 309 0 30 chr1 73147272 73147372 -124048060 + LTR33 LTR ERVL 417 513 -2 2 1143 462 293 101 57 chr1 73147750 73148086 -124047346 - ORR1E LTR MaLR -5 354 4 2 1143 591 260 43 22 chr1 73148503 73148688 -124046744 - B3A SINE B2 -8 190 2 2 1143 225 324 162 17 chr1 73149520 73149693 -124045739 - MIR SINE MIR -18 244 47 2 1143 403 250 6 17 chr1 73150269 73150444 -124044988 + (TA)n Simple_repeat Simple_repeat 2 174 0 2 1143 265 372 20 7 chr1 73150691 73150837 -124044595 + B1F1 SINE Alu 1 148 -1 2 1143 2426 57 3 3 chr1 73150847 73151146 -124044286 - L1_Mur1 LINE L1 -51 5835 5537 2 1143 1578 94 155 8 chr1 73151142 73151400 -124044032 + Lx3A LINE L1 6686 6981 0 2 1143 350 279 107 21 chr1 73151419 73151432 -124044000 + L1MA4 LINE L1 5653 5665 -635 2 1143 987 48 20 27 chr1 73151432 73151582 -124043850 + (GGGAGA)n Simple_repeat Simple_repeat 3 151 0 2 1143 379 262 96 25 chr1 73151582 73151803 -124043629 + L1MA4 LINE L1 5666 5907 -393 2 1143 204 139 0 27 chr1 73151876 73151913 -124043519 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1143 1433 172 22 15 chr1 73153353 73153624 -124041808 + ORR1C1 LTR MaLR 106 378 0 2 1143 291 54 0 0 chr1 73153839 73153876 -124041556 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 2 1143 853 163 3 13 chr1 73153994 73154306 -124041126 + GA-rich Low_complexity Low_complexity 1 309 0 2 1143 233 318 85 8 chr1 73154744 73154874 -124040558 - MLT1F LTR MaLR -140 408 269 2 1143 243 0 0 0 chr1 73156034 73156061 -124039371 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1143 2105 234 46 8 chr1 73156067 73156545 -124038887 + Lx5 LINE L1 6555 7050 0 2 1143 410 272 0 0 chr1 73156553 73156634 -124038798 + ID4_ SINE ID 2 82 -1 2 1143 239 274 12 88 chr1 73156640 73156720 -124038712 + BC1_Mm scRNA scRNA 2 75 -77 2 1143 807 228 40 20 chr1 73156659 73156860 -124038572 + ID_B1 SINE B4 16 220 -4 2 1143 963 170 45 41 chr1 73157048 73157144 -124038288 + URR1A DNA MER1_type 5 101 -125 2 1143 2774 25 3 38 chr1 73157144 73157483 -124037949 + IAPLTR2b LTR ERVK 1 327 0 2 1143 963 170 45 41 chr1 73157483 73157607 -124037825 + URR1A DNA MER1_type 102 226 0 2 1143 339 247 26 0 chr1 73157689 73157766 -124037666 - ID4_ SINE ID -3 80 2 2 1143 207 0 0 0 chr1 73158874 73158897 -124036535 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1143 480 224 0 3 chr1 73159189 73159309 -124036123 - Charlie7 DNA MER1_type -2492 120 3 2 1143 479 314 59 59 chr1 73160198 73160486 -124034946 - MLT1C LTR MaLR -6 461 174 2 1143 402 21 0 0 chr1 73160520 73160567 -124034865 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1143 741 248 46 15 chr1 73160574 73160771 -124034661 - ID_B1 SINE B4 -21 203 1 2 1143 374 263 81 50 chr1 73160796 73160956 -124034476 - MLT1C LTR MaLR -297 170 6 2 1143 480 349 59 19 chr1 73164345 73164669 -124030763 - ORR1E LTR MaLR -19 340 4 2 1143 498 17 0 0 chr1 73165144 73165203 -124030229 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1143 226 318 128 61 chr1 73165920 73166084 -124029348 + MIRc SINE MIR 17 191 -77 2 1143 243 146 0 0 chr1 73166086 73166127 -124029305 + (GGA)n Simple_repeat Simple_repeat 3 43 0 2 1143 240 357 0 0 chr1 73166412 73166510 -124028922 + T-rich Low_complexity Low_complexity 5 102 0 2 1143 410 66 33 0 chr1 73167721 73167782 -124027650 + (CCCCCT)n Simple_repeat Simple_repeat 6 68 0 2 1143 1293 214 82 55 chr1 73168921 73169286 -124026146 + MTE2a LTR MaLR 4 378 -1 2 1143 385 284 28 66 chr1 73169738 73169919 -124025513 + MamSINE1 SINE tRNA 67 240 -50 2 1143 259 308 36 45 chr1 73170247 73170359 -124025073 - B3A SINE B2 -15 183 73 2 1143 3471 189 105 3 chr1 73170775 73170893 -124024539 - RMER1A Other Other -6 1024 888 2 1143 189 0 0 0 chr1 73170893 73170914 -124024518 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1143 3471 218 94 3 chr1 73170914 73171680 -124023752 - RMER1A Other Other -143 887 186 2 1143 1190 259 102 31 chr1 73173006 73173525 -124021907 + L1MA5 LINE L1 5665 6220 -80 2 1143 581 326 0 0 chr1 73173623 73173770 -124021662 + RSINE1 SINE B4 2 148 -17 2 1143 812 10 10 0 chr1 73173778 73173875 -124021557 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 2 1143 2134 140 8 14 chr1 73174381 73174737 -124020695 - ORR1B1 LTR MaLR 0 394 41 2 1143 411 83 0 0 chr1 73174900 73174960 -124020472 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1143 469 260 10 0 chr1 73174962 73175062 -124020370 - B3A SINE B2 -24 174 74 2 1143 399 196 97 10 chr1 73175801 73175904 -124019528 + MER3 DNA MER1_type 35 146 -63 2 1143 780 258 72 16 chr1 73175965 73176269 -124019163 + Charlie5 DNA MER1_type 2304 2624 0 2 1143 272 324 0 0 chr1 73176512 73176580 -124018852 - AluF_3 SINE Alu -105 206 139 3 1143 186 43 0 0 chr1 73177554 73177577 -124017855 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1143 819 271 100 12 chr1 73177593 73177843 -124017589 - B4 SINE B4 -16 276 5 3 1143 252 86 0 0 chr1 73178008 73178043 -124017389 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 3 1143 22 35 0 0 chr1 73178106 73178135 -124017297 + AT_rich Low_complexity Low_complexity 1 29 0 3 1143 1912 169 56 46 chr1 73179766 73180156 -124015276 - ORR1B1 LTR MaLR 0 394 1 3 1143 1352 251 32 45 chr1 73180273 73180677 -124014755 - Lx8 LINE L1 -219 7254 6856 3 1143 1229 52 5 65 chr1 73181429 73181662 -124013770 - L1Md_F3 LINE L1 0 6584 6398 3 1143 7357 39 2 2 chr1 73181665 73182531 -124012901 - L1Md_F2 LINE L1 -12 6570 5705 3 1143 423 94 40 0 chr1 73182528 73182594 -124012838 + Lx2A LINE L1 5657 5764 -2021 3 1143 770 0 11 0 chr1 73182599 73182689 -124012743 + (TTC)n Simple_repeat Simple_repeat 3 93 0 3 1143 963 269 36 8 chr1 73182813 73183060 -124012372 + B4A SINE B4 25 278 -14 3 1143 221 282 0 14 chr1 73183187 73183259 -124012173 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1143 772 161 13 38 chr1 73183735 73183928 -124011504 + B3 SINE B2 5 186 -9 3 1143 737 209 0 11 chr1 73184527 73184701 -124010731 + A-rich Low_complexity Low_complexity 2 173 0 3 1143 367 314 45 7 chr1 73186520 73186674 -124008758 + MER5A1 DNA MER1_type 6 165 -1 3 1143 864 77 0 0 chr1 73186723 73186840 -124008592 + (TCCCC)n Simple_repeat Simple_repeat 2 118 0 3 1143 338 301 118 10 chr1 73188002 73188197 -124007235 + L1MC3 LINE L1 5257 5472 -861 3 1143 600 244 7 15 chr1 73188312 73188449 -124006983 + B1_Mur1 SINE Alu 7 142 -7 3 1143 288 0 0 0 chr1 73188453 73188485 -124006947 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1143 2745 291 142 17 chr1 73188486 73189906 -124005526 + L1MC3 LINE L1 5623 7219 -566 3 1143 29 28 0 0 chr1 73190084 73190120 -124005312 + AT_rich Low_complexity Low_complexity 1 36 0 3 1143 530 211 176 6 chr1 73190614 73190790 -124004642 - ID_B1 SINE B4 -15 209 4 3 1143 1119 237 91 100 chr1 73191817 73192160 -124003272 - ORR1E LTR MaLR 0 379 4 3 1143 182 324 0 26 chr1 73193293 73193369 -124002063 + MIR SINE MIR 78 151 -111 3 1143 300 27 0 0 chr1 73194173 73194210 -124001222 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1143 396 0 0 0 chr1 73194381 73194425 -124001007 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1143 506 203 8 0 chr1 73194622 73194740 -124000692 + GA-rich Low_complexity Low_complexity 1 119 0 3 1143 207 143 23 23 chr1 73194756 73194799 -124000633 + GA-rich Low_complexity Low_complexity 2 44 0 3 1143 231 36 0 0 chr1 73195088 73195116 -124000316 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1143 819 215 105 5 chr1 73195140 73195350 -124000082 - B4A SINE B4 -6 286 56 3 1143 3331 46 5 0 chr1 73195759 73196153 -123999279 + MTA_Mm LTR MaLR 1 396 0 3 1143 794 260 73 84 chr1 73196503 73196860 -123998572 + ORR1E LTR MaLR 1 353 -6 3 1143 311 60 20 0 chr1 73197036 73197086 -123998346 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 3 1143 772 224 102 5 chr1 73197132 73197329 -123998103 + B3 SINE B2 1 216 0 3 1143 365 213 94 39 chr1 73197580 73197707 -123997725 - MIRc SINE MIR -104 164 31 3 1143 184 323 85 39 chr1 73197700 73197829 -123997603 - L3 LINE CR1 -164 4325 4191 3 1143 513 58 0 0 chr1 73198220 73198289 -123997143 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1143 275 327 10 0 chr1 73198795 73198896 -123996536 + PB1D10 SINE Alu 14 115 -2 3 1143 811 119 345 0 chr1 73199116 73199284 -123996148 - URR1A DNA MER1_type 0 226 1 3 1143 249 149 36 36 chr1 73199435 73199575 -123995857 + CT-rich Low_complexity Low_complexity 1 140 0 3 1143 282 29 0 0 chr1 73201239 73201274 -123994158 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1143 567 0 0 0 chr1 73201274 73201336 -123994096 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1143 229 289 36 12 chr1 73202255 73202339 -123993093 - MTEa LTR MaLR 0 379 294 3 1143 405 210 32 129 chr1 73203975 73204161 -123991271 + Lx7 LINE L1 7529 7696 0 3 1143 653 280 11 169 chr1 73205385 73205574 -123989858 - B3A SINE B2 -6 192 26 3 1143 459 0 0 0 chr1 73205894 73205945 -123989487 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1143 252 0 0 0 chr1 73206463 73206491 -123988941 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1143 25 0 0 0 chr1 73206577 73206602 -123988830 + AT_rich Low_complexity Low_complexity 1 25 0 3 1143 1062 239 97 78 chr1 73211136 73211508 -123983924 - MTEa LTR MaLR 0 379 1 3 1143 265 200 30 15 chr1 73211869 73211935 -123983497 + CT-rich Low_complexity Low_complexity 3 69 0 3 1143 608 275 28 55 chr1 73214004 73214283 -123981149 - MTEa LTR MaLR -1 378 94 3 1143 397 90 90 0 chr1 73214387 73214454 -123980978 + URR1B DNA MER1_type 153 225 0 3 1143 367 220 0 123 chr1 73214455 73214569 -123980863 - MTEa LTR MaLR -259 100 1 3 1143 400 315 78 1 chr1 73214593 73214763 -123980669 + L2a LINE L2 3184 3415 -11 3 1143 597 286 102 39 chr1 73215919 73216203 -123979229 + LTR33A_ LTR ERVL 184 485 -46 3 1143 181 119 72 29 chr1 73216655 73216724 -123978708 + GA-rich Low_complexity Low_complexity 1 72 0 3 1143 432 0 0 0 chr1 73217219 73217267 -123978165 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1143 23 0 0 0 chr1 73218448 73218471 -123976961 + AT_rich Low_complexity Low_complexity 1 23 0 3 1143 775 324 78 72 chr1 73218779 73219278 -123976154 - MLT1F2 LTR MaLR 0 560 59 3 1143 376 238 26 95 chr1 73219435 73219448 -123975984 + MT2B LTR ERVL 153 157 -444 3 1143 695 206 22 22 chr1 73219448 73219587 -123975845 + B1_Mur3 SINE Alu 2 140 -9 3 1143 186 43 0 0 chr1 73219587 73219610 -123975822 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 1143 396 0 0 0 chr1 73219912 73219956 -123975476 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1143 2026 147 50 55 chr1 73220729 73221111 -123974321 - ORR1C2 LTR MaLR -2 382 3 3 1143 186 43 0 0 chr1 73224461 73224484 -123970948 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 1143 620 259 0 62 chr1 73224514 73224658 -123970774 - RSINE1 SINE B4 -29 136 2 3 1143 25 65 0 0 chr1 73225009 73225055 -123970377 + AT_rich Low_complexity Low_complexity 1 46 0 3 1143 7837 75 2 1 chr1 73225682 73227043 -123968389 - L1_Mus1 LINE L1 0 6567 5230 3 1143 255 292 113 51 chr1 73227438 73227615 -123967817 + MLT1B LTR MaLR 61 248 -142 3 1143 293 0 27 0 chr1 73228398 73228435 -123966997 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 3 1143 239 319 11 51 chr1 73235757 73235932 -123959500 + CT-rich Low_complexity Low_complexity 1 168 0 3 1143 259 130 0 36 chr1 73236046 73236102 -123959330 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1143 288 226 0 0 chr1 73236102 73236155 -123959277 - RMER30 DNA MER1_type -120 82 30 3 1143 23 0 0 0 chr1 73236839 73236862 -123958570 + AT_rich Low_complexity Low_complexity 1 23 0 3 1143 252 0 0 0 chr1 73237327 73237355 -123958077 + (CCA)n Simple_repeat Simple_repeat 1 28 0 3 1143 465 97 58 0 chr1 73238431 73238534 -123956898 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 1143 450 0 0 0 chr1 73239569 73239619 -123955813 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1143 2726 68 3 13 chr1 73239619 73240006 -123955426 - MTB_Mm LTR MaLR -3 404 22 3 1143 468 0 0 0 chr1 73240368 73240420 -123955012 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1143 655 289 160 0 chr1 73242059 73242346 -123953086 - MER2 DNA MER2_type 0 345 13 3 1143 231 61 0 0 chr1 73243468 73243501 -123951931 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1143 783 39 0 9 chr1 73243501 73243597 -123951835 - B1_Mm SINE Alu -9 138 43 3 1143 305 174 144 58 chr1 73243527 73243631 -123951801 - MT2B LTR ERVL -337 264 152 3 1143 273 236 94 39 chr1 73243657 73243785 -123951647 + MIR3 SINE MIR 30 164 -44 3 1143 3514 50 2 0 chr1 73244078 73244500 -123950932 + L1Md_F2 LINE L1 5713 6135 -447 3 1143 390 311 0 15 chr1 73244597 73244734 -123950698 - L1_Rod LINE L1 -169 5678 5544 3 1143 223 339 0 0 chr1 73244984 73245046 -123950386 + G-rich Low_complexity Low_complexity 2 63 0 3 1143 227 204 23 0 chr1 73245000 73245044 -123950388 + GA-rich Low_complexity Low_complexity 2 46 0 3 1143 180 0 0 0 chr1 73245659 73245679 -123949753 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1143 330 311 35 69 chr1 73246258 73246403 -123949029 + MIRc SINE MIR 84 226 -42 3 1143 2710 31 0 0 chr1 73247522 73247840 -123947592 - L1Md_A LINE L1 -552 6030 5713 3 1143 951 32 8 0 chr1 73247840 73247965 -123947467 + L1Md_T LINE L1 6457 6582 0 3 1143 213 239 30 0 chr1 73248081 73248148 -123947284 + CT-rich Low_complexity Low_complexity 3 71 0 3 1143 329 248 84 84 chr1 73248259 73248413 -123947019 - MLT1H1 LTR MaLR -9 546 327 3 1143 390 42 0 0 chr1 73249487 73249535 -123945897 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1143 376 256 90 37 chr1 73250437 73250571 -123944861 - MLT1E1A LTR MaLR -63 590 450 3 1143 432 313 101 5 chr1 73250578 73250777 -123944655 - MLT1E1A LTR MaLR -361 319 102 3 1143 287 301 0 7 chr1 73251016 73251153 -123944279 + CT-rich Low_complexity Low_complexity 1 136 0 3 1143 891 139 0 18 chr1 73251148 73251317 -123944115 + C-rich Low_complexity Low_complexity 6 171 0 3 1143 539 293 21 0 chr1 73251342 73251482 -123943950 - B1F1 SINE Alu -6 143 1 3 1143 340 335 71 67 chr1 73252379 73252632 -123942800 + LTR16B2 LTR ERVL 12 265 -197 3 1143 204 40 0 0 chr1 73253125 73253150 -123942282 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1143 664 50 30 0 chr1 73253150 73253250 -123942182 + (CAGAGA)n Simple_repeat Simple_repeat 6 108 0 3 1143 1090 285 53 6 chr1 73254515 73254875 -123940557 - MTEa LTR MaLR 0 379 3 4 1143 298 313 61 0 chr1 73255026 73255125 -123940307 + MER5B DNA MER1_type 6 110 -68 4 1143 225 0 0 0 chr1 73255805 73255830 -123939602 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1143 1264 278 44 0 chr1 73256417 73256780 -123938652 + MTEb LTR MaLR 1 379 0 4 1143 204 319 0 40 chr1 73256870 73256945 -123938487 + MIRc SINE MIR 98 169 -99 4 1143 974 167 116 0 chr1 73257004 73257202 -123938230 + URR1A DNA MER1_type 1 221 -5 4 1143 414 273 36 0 chr1 73257444 73257554 -123937878 + PB1D7 SINE Alu 6 119 -1 4 1143 230 274 0 14 chr1 73259348 73259422 -123936010 - MLT1A1 LTR MaLR 0 408 336 4 1143 341 273 10 0 chr1 73259844 73259943 -123935489 + ID_B1 SINE B4 96 195 -29 4 1143 649 300 96 122 chr1 73259987 73260526 -123934906 + RMER13A LTR ERVK 30 600 -27 4 1143 218 32 32 0 chr1 73262379 73262410 -123933022 + (TTG)n Simple_repeat Simple_repeat 3 34 0 4 1143 474 208 0 0 chr1 73262443 73262539 -123932893 - B1F SINE Alu 0 149 54 4 1143 367 172 63 21 chr1 73262980 73263075 -123932357 - Lx9 LINE L1 -1 7643 7545 4 1143 305 162 15 0 chr1 73263703 73263771 -123931661 + G-rich Low_complexity Low_complexity 6 74 0 4 1143 261 0 0 0 chr1 73264123 73264152 -123931280 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1143 291 192 0 0 chr1 73264509 73264582 -123930850 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1143 893 176 68 5 chr1 73264726 73264948 -123930484 - Lx9 LINE L1 -13 7631 7396 4 1143 532 184 97 62 chr1 73264948 73265093 -123930339 + Lx9 LINE L1 7060 7209 -435 4 1143 470 243 20 41 chr1 73265139 73265285 -123930147 - B4 SINE B4 -148 144 2 4 1143 587 171 8 0 chr1 73265530 73265659 -123929773 + (TG)n Simple_repeat Simple_repeat 2 131 0 4 1143 243 337 44 39 chr1 73266991 73267173 -123928259 + ORR1E LTR MaLR 1 183 -176 4 1143 749 92 8 9 chr1 73267585 73267699 -123927733 + B1_Mus1 SINE Alu 24 138 -10 4 1143 774 0 0 0 chr1 73267699 73267785 -123927647 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 4 1143 343 274 10 65 chr1 73269090 73269227 -123926205 - PB1D10 SINE Alu -15 135 6 4 1144 414 0 0 0 chr1 73269382 73269428 -123926004 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 1144 518 321 19 31 chr1 73270008 73270169 -123925263 - RSINE1 SINE B4 -4 161 3 4 1144 299 25 0 24 chr1 73271885 73271926 -123923506 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4 1144 430 266 0 26 chr1 73272259 73272375 -123923057 - PB1D9 SINE Alu 0 120 8 4 1144 308 258 0 49 chr1 73272285 73272387 -123923045 - ID_B1 SINE B4 -49 175 79 4 1144 523 242 50 82 chr1 73272942 73273162 -123922270 - Lx8 LINE L1 -1 7472 7260 4 1144 434 336 60 30 chr1 73273160 73273458 -123921974 - L1MB8 LINE L1 -63 6115 5809 4 1144 363 23 0 0 chr1 73273676 73273720 -123921712 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1144 274 292 97 0 chr1 73273782 73273895 -123921537 - MER5A DNA MER1_type -55 134 11 4 1144 515 275 138 14 chr1 73274459 73274669 -123920763 - L1MC2 LINE L1 -1 6332 6097 4 1144 1568 261 68 68 chr1 73274704 73275602 -123919830 - L1MC2 LINE L1 -402 5942 5016 4 1144 405 0 0 0 chr1 73275602 73275647 -123919785 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1144 748 265 77 140 chr1 73275647 73275702 -123919730 - L1MC2 LINE L1 -1131 5015 4992 4 1144 225 0 0 0 chr1 73275702 73275727 -123919705 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1144 748 265 77 140 chr1 73275727 73276100 -123919332 - L1MC2 LINE L1 -1155 4991 4652 4 1144 360 0 0 0 chr1 73276677 73276717 -123918715 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 4 1144 21 57 0 0 chr1 73276898 73276933 -123918499 + AT_rich Low_complexity Low_complexity 1 35 0 4 1144 379 295 42 108 chr1 73276933 73277100 -123918332 - RSINE1 SINE B4 -6 159 4 4 1144 374 247 31 0 chr1 73277913 73278010 -123917422 - L1M2 LINE L1 -698 5593 5494 4 1144 838 269 75 26 chr1 73278135 73278402 -123917030 - B4A SINE B4 -9 283 4 4 1144 1262 248 108 15 chr1 73278403 73279015 -123916417 - L1M2 LINE L1 -749 5440 4757 4 1144 195 162 0 0 chr1 73279383 73279420 -123916012 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1144 739 295 31 31 chr1 73279421 73279494 -123915938 - B4A SINE B4 -2 290 220 4 1144 893 128 7 0 chr1 73279494 73279642 -123915790 + (TTCC)n Simple_repeat Simple_repeat 3 151 0 4 1144 739 295 31 31 chr1 73279642 73279858 -123915574 - B4A SINE B4 -73 219 1 4 1144 456 91 0 0 chr1 73280170 73280236 -123915196 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1144 233 163 20 20 chr1 73281130 73281180 -123914252 - MIRb SINE MIR -103 165 116 4 1144 626 244 35 23 chr1 73282379 73282551 -123912881 - ID_B1 SINE B4 -12 212 39 4 1144 222 171 0 0 chr1 73283279 73283320 -123912112 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 4 1144 996 257 64 51 chr1 73284321 73284710 -123910722 - L1MC3 LINE L1 -578 7207 6814 4 1144 456 345 59 48 chr1 73284989 73285359 -123910073 - BLACKJACK DNA AcHobo -1688 1256 883 4 1144 749 293 89 81 chr1 73285359 73285730 -123909702 + MTEa LTR MaLR 1 374 -5 4 1144 2960 286 97 20 chr1 73285730 73286891 -123908541 + MTEa-int LTR MaLR 1 1250 -330 4 1144 198 143 0 0 chr1 73286978 73287013 -123908419 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1144 209 182 0 18 chr1 73287307 73287363 -123908069 + GA-rich Low_complexity Low_complexity 3 57 0 4 1144 35 54 0 0 chr1 73287437 73287493 -123907939 + AT_rich Low_complexity Low_complexity 1 56 0 4 1144 1079 58 0 0 chr1 73287569 73287708 -123907724 - B1_Mm SINE Alu 0 147 9 4 1144 468 0 0 0 chr1 73287900 73287952 -123907480 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1144 692 190 7 7 chr1 73287952 73288081 -123907351 - B1_Mur4 SINE Alu -9 141 13 4 1144 259 259 114 0 chr1 73288530 73288613 -123906819 - ID4 SINE ID -58 94 4 4 1144 186 338 0 29 chr1 73289726 73289796 -123905636 - MIRm SINE MIR -196 80 13 4 1144 312 263 168 0 chr1 73290255 73290350 -123905082 + PB1D9 SINE Alu 2 112 -8 4 1144 423 0 0 0 chr1 73291325 73291372 -123904060 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1144 5309 71 0 16 chr1 73291443 73292143 -123903289 - L1Md_F2 LINE L1 0 6582 5894 4 1144 229 304 109 16 chr1 73292871 73293014 -123902418 + MIRb SINE MIR 41 207 -55 4 1144 974 185 79 10 chr1 73293393 73293595 -123901837 + B3 SINE B2 1 216 0 4 1144 405 0 0 0 chr1 73293708 73293753 -123901679 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1144 414 0 0 0 chr1 73294678 73294724 -123900708 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1144 951 140 0 0 chr1 73294743 73294886 -123900546 - B1_Mus2 SINE Alu 0 147 5 4 1144 415 292 0 0 chr1 73296761 73296867 -123898565 - PB1D10 SINE Alu -10 107 2 4 1144 240 221 25 38 chr1 73299868 73299948 -123895484 + L1MA10 LINE L1 6256 6334 0 4 1144 247 167 24 0 chr1 73300404 73300446 -123894986 - B3 SINE B2 -87 129 87 4 1144 439 321 140 7 chr1 73300463 73300755 -123894677 - L1ME2 LINE L1 -191 5973 5643 4 1144 611 307 182 73 chr1 73300902 73301461 -123893971 - MER21B LTR ERV1 -109 754 135 4 1144 235 295 293 6 chr1 73301574 73301731 -123893701 + L1M4 LINE L1 5404 5605 -573 4 1144 299 259 25 0 chr1 73301828 73301909 -123893523 - L1MB7 LINE L1 -214 5970 5888 4 1144 722 116 47 30 chr1 73301918 73302104 -123893328 - B2_Mm1t SINE B2 0 195 1 4 1144 519 277 71 28 chr1 73302188 73302370 -123893062 + B3A SINE B2 1 190 -8 4 1144 986 281 105 44 chr1 73302383 73303058 -123892374 - L1MB7 LINE L1 -1748 4398 3683 4 1144 306 303 180 50 chr1 73303642 73303781 -123891651 + RSINE1 SINE B4 1 157 -8 4 1144 232 338 0 0 chr1 73304132 73304206 -123891226 + CT-rich Low_complexity Low_complexity 2 75 0 4 1144 266 200 11 91 chr1 73304331 73304419 -123891013 - PB1D9 SINE Alu 0 120 40 4 1144 1634 32 0 0 chr1 73304884 73305070 -123890362 - L1Md_F2 LINE L1 -335 6247 6062 4 1144 2489 56 12 6 chr1 73305070 73305394 -123890038 + L1Md_F2 LINE L1 6255 6580 -2 4 1144 1042 144 106 29 chr1 73305395 73305602 -123889830 - URR1A DNA MER1_type 0 226 4 4 1144 209 272 73 85 chr1 73306371 73306548 -123888884 + L3b LINE CR1 176 350 -132 4 1144 282 278 57 85 chr1 73308175 73308455 -123886977 - ORR1E LTR MaLR -14 365 86 4 1144 182 318 144 64 chr1 73309290 73309478 -123885954 - MIR SINE MIR -4 258 56 4 1144 236 200 0 16 chr1 73310784 73310845 -123884587 + C-rich Low_complexity Low_complexity 3 62 0 4 1144 271 260 18 114 chr1 73311036 73311209 -123884223 - RSINE1 SINE B4 -146 146 1 4 1144 602 13 0 13 chr1 73311502 73311578 -123883854 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1144 708 115 47 54 chr1 73312499 73312628 -123882804 - B1_Mur3 SINE Alu -21 128 1 4 1144 271 351 45 0 chr1 73313235 73313346 -123882086 - MIRb SINE MIR -50 218 103 4 1144 877 276 48 135 chr1 73313765 73314158 -123881274 + MTE2a LTR MaLR 21 379 0 4 1144 1616 279 109 15 chr1 73314319 73314868 -123880564 - Tigger7 DNA MER2_type -1889 602 2 4 1144 188 290 0 46 chr1 73315180 73315245 -123880187 - MIR3 SINE MIR -28 180 119 4 1144 267 31 0 0 chr1 73316583 73316615 -123878817 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1144 556 88 33 0 chr1 73316639 73316730 -123878702 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 4 1144 239 354 12 93 chr1 73318197 73318359 -123877073 - Lx8 LINE L1 -218 7255 7107 4 1144 189 0 0 0 chr1 73319331 73319352 -123876080 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1144 420 55 0 0 chr1 73322062 73322117 -123873315 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1144 1011 286 89 0 chr1 73323649 73323974 -123871458 - Lx9 LINE L1 -655 6989 6636 4 1144 581 144 25 18 chr1 73324592 73324755 -123870677 + (TG)n Simple_repeat Simple_repeat 1 164 0 4 1144 195 146 18 35 chr1 73324821 73324878 -123870554 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1144 472 289 65 39 chr1 73324907 73325062 -123870370 - RSINE1 SINE B4 -1 164 6 4 1144 302 241 36 18 chr1 73326380 73326490 -123868942 + L1MA8 LINE L1 6169 6280 -11 5 1144 240 163 47 0 chr1 73326602 73326645 -123868787 + ORR1D2 LTR MaLR 2 46 -324 5 1144 275 190 17 0 chr1 73326798 73326856 -123868576 - MTEb LTR MaLR -320 59 1 5 1144 576 141 47 6 chr1 73327456 73327497 -123867935 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1144 315 0 0 0 chr1 73327497 73327532 -123867900 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1144 576 141 47 6 chr1 73327532 73327661 -123867771 + (CA)n Simple_repeat Simple_repeat 1 136 0 5 1144 273 138 34 17 chr1 73327661 73327720 -123867712 + (CATA)n Simple_repeat Simple_repeat 1 60 0 5 1144 405 0 0 0 chr1 73327720 73327765 -123867667 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1144 468 0 0 0 chr1 73327765 73327816 -123867616 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1144 228 196 88 18 chr1 73328467 73328524 -123866908 + MLT1E2 LTR MaLR 3 63 -564 5 1144 396 319 65 27 chr1 73328704 73328888 -123866544 + MLT1E2 LTR MaLR 231 421 -206 5 1144 309 279 31 75 chr1 73328877 73329036 -123866396 + MLT1D LTR MaLR 351 502 -3 5 1144 238 274 14 14 chr1 73329248 73329322 -123866110 - L3 LINE CR1 -774 3715 3642 5 1144 243 349 24 0 chr1 73332696 73332779 -123862653 + B4 SINE B4 1 85 -207 5 1144 329 109 18 0 chr1 73332785 73332840 -123862592 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1144 539 314 6 25 chr1 73332874 73333037 -123862395 + B4 SINE B4 106 265 -27 5 1144 315 0 0 0 chr1 73333038 73333073 -123862359 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1144 381 191 0 0 chr1 73333080 73333190 -123862242 + GA-rich Low_complexity Low_complexity 2 111 0 5 1144 273 318 26 35 chr1 73333728 73333842 -123861590 + Lx8 LINE L1 7044 7156 -317 5 1144 243 88 0 0 chr1 73333950 73333984 -123861448 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1144 1319 204 45 36 chr1 73334536 73334892 -123860540 - RLTR10D LTR ERVK 0 359 1 5 1144 2248 166 19 8 chr1 73334892 73335263 -123860169 - IAP-d-int LTR ERVK 0 6542 6168 5 1144 2528 224 5 12 chr1 73335312 73335896 -123859536 - IAP-d-int LTR ERVK -483 6059 5480 5 1144 6409 272 23 25 chr1 73335891 73337921 -123857511 - IAP-d-int LTR ERVK -1366 5176 3151 5 1144 587 207 7 67 chr1 73337948 73338098 -123857334 - IAP-d-int LTR ERVK -6401 141 1 5 1144 1315 214 39 31 chr1 73338098 73338454 -123856978 - RLTR10D LTR ERVK 0 359 1 5 1144 37619 29 2 7 chr1 73338489 73343687 -123851745 + L1Md_T LINE L1 422 5586 -297 5 1144 8571 31 1 0 chr1 73343687 73344677 -123850755 + L1Md_T LINE L1 5587 6577 -5 5 1144 379 48 0 31 chr1 73344818 73344882 -123850550 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1144 309 333 73 20 chr1 73344884 73345034 -123850398 - RSINE1 SINE B4 -6 159 2 5 1144 592 322 28 5 chr1 73345061 73345273 -123850159 - B4 SINE B4 -73 219 3 5 1144 948 309 10 10 chr1 73346182 73346473 -123848959 + B4A SINE B4 2 292 0 5 1144 189 94 0 0 chr1 73346538 73346570 -123848862 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 5 1144 205 246 125 62 chr1 73346689 73346865 -123848567 - MIRc SINE MIR -3 205 23 5 1144 462 91 0 0 chr1 73347178 73347255 -123848177 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 1144 277 296 14 0 chr1 73348050 73348121 -123847311 + ID4 SINE ID 10 81 -2 5 1144 4986 72 6 6 chr1 73348243 73348899 -123846533 + L1_Mus3 LINE L1 5983 6638 0 5 1144 347 314 94 36 chr1 73349378 73349570 -123845862 - MIRc SINE MIR -65 203 1 5 1144 360 0 0 0 chr1 73350097 73350137 -123845295 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1144 432 0 0 0 chr1 73350912 73350960 -123844472 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1144 859 282 18 5 chr1 73350960 73351184 -123844248 - B4 SINE B4 -23 269 43 5 1144 283 44 44 0 chr1 73351184 73351229 -123844203 + (TTC)n Simple_repeat Simple_repeat 2 48 0 5 1144 1189 62 0 0 chr1 73351255 73351399 -123844033 - B1_Mus2 SINE Alu 0 147 4 5 1144 191 291 52 87 chr1 73351456 73351629 -123843803 + L2a LINE L2 3256 3422 -4 5 1144 1228 41 0 0 chr1 73351717 73351863 -123843569 - B1_Mm SINE Alu 0 147 2 5 1144 995 67 40 0 chr1 73352027 73352176 -123843256 - URR1A DNA MER1_type 0 226 72 5 1144 338 300 96 50 chr1 73353276 73353556 -123841876 + B4 SINE B4 15 268 -24 5 1144 202 375 18 9 chr1 73354517 73354630 -123840802 - L2b LINE L2 -4 3371 3258 5 1144 222 293 0 79 chr1 73355407 73355496 -123839936 - MIRb SINE MIR -5 263 182 5 1144 696 12 0 0 chr1 73355828 73355909 -123839523 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1144 1134 256 32 29 chr1 73357082 73357360 -123838072 - B4 SINE B4 0 292 14 5 1144 307 246 14 0 chr1 73357412 73357481 -123837951 + B3A SINE B2 1 70 -128 5 1144 396 40 0 0 chr1 73357574 73357624 -123837808 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1144 555 118 0 0 chr1 73357647 73357732 -123837700 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 5 1144 288 289 101 19 chr1 73357816 73357975 -123837457 - MLT1D LTR MaLR -317 188 17 5 1144 342 279 0 35 chr1 73358668 73358813 -123836619 - MER53 DNA hAT -15 178 39 5 1144 295 333 27 13 chr1 73360558 73360707 -123834725 - L1ME3 LINE L1 0 6162 6012 5 1144 301 169 0 38 chr1 73360955 73361035 -123834397 + CT-rich Low_complexity Low_complexity 1 77 0 5 1144 1935 187 155 70 chr1 73361233 73361761 -123833671 - Lx4B LINE L1 0 7058 6486 5 1144 27 62 0 0 chr1 73361910 73361958 -123833474 + AT_rich Low_complexity Low_complexity 1 48 0 5 1144 4106 20 0 0 chr1 73361981 73362441 -123832991 + L1Md_A LINE L1 6122 6581 -1 5 1144 404 171 361 0 chr1 73362730 73362849 -123832583 - B3 SINE B2 0 216 55 5 1144 810 48 0 0 chr1 73362954 73363057 -123832375 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 5 1144 275 329 27 60 chr1 73363117 73363266 -123832166 - L1ME3 LINE L1 -388 5776 5633 5 1144 234 105 0 0 chr1 73364077 73364115 -123831317 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1144 727 270 35 55 chr1 73364121 73364376 -123831056 - B4A SINE B4 0 292 43 5 1144 39824 34 0 0 chr1 73364376 73369787 -123825645 - L1Md_T LINE L1 -2 6580 1170 5 1144 5696 176 18 24 chr1 73369793 73371106 -123824326 - L1Md_T LINE L1 -5411 1205 99 5 1144 189 0 0 0 chr1 73371253 73371274 -123824158 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1144 265 274 19 19 chr1 73371484 73371588 -123823844 - L1MEc LINE L1 -3570 2749 2646 5 1144 226 267 59 0 chr1 73371837 73371938 -123823494 - L1MEc LINE L1 -4013 2387 2281 5 1144 353 321 44 7 chr1 73372391 73372526 -123822906 - B1F1 SINE Alu -7 142 3 5 1144 207 0 0 0 chr1 73372535 73372558 -123822874 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 5 1144 5421 147 36 8 chr1 73372563 73373476 -123821956 - Lx LINE L1 -5 6649 5711 5 1144 563 294 33 0 chr1 73373662 73373842 -123821590 - MLT1C LTR MaLR -15 452 267 5 1144 728 221 18 18 chr1 73375089 73375255 -123820177 - Lx9 LINE L1 -409 7235 7070 5 1144 641 224 241 53 chr1 73375255 73375500 -123819932 + Lx9 LINE L1 7222 7512 -132 5 1144 4322 155 51 55 chr1 73375511 73376130 -123819302 - RMER17B LTR ERVK 0 958 329 5 1144 3586 62 2 29 chr1 73376130 73376611 -123818821 + L1Md_F2 LINE L1 6114 6581 -1 5 1144 4322 155 51 55 chr1 73376611 73376952 -123818480 - RMER17B LTR ERVK -630 328 2 5 1144 559 243 0 7 chr1 73376960 73377113 -123818319 + Lx9 LINE L1 7487 7638 -6 5 1144 981 139 0 0 chr1 73378121 73378294 -123817138 + (TGG)n Simple_repeat Simple_repeat 3 175 0 5 1144 815 144 8 0 chr1 73378907 73379039 -123816393 + B1_Mur4 SINE Alu 15 147 -3 5 1144 183 80 0 0 chr1 73379039 73379064 -123816368 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1144 576 0 0 0 chr1 73379067 73379131 -123816301 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 5 1144 387 0 0 0 chr1 73379155 73379198 -123816234 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1144 418 273 123 77 chr1 73379273 73379428 -123816004 + RSINE1 SINE B4 4 165 0 5 1144 222 37 0 0 chr1 73379546 73379573 -123815859 + (TCC)n Simple_repeat Simple_repeat 2 28 0 5 1144 654 68 0 0 chr1 73381187 73381275 -123814157 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1144 498 33 0 0 chr1 73381983 73382043 -123813389 + (TAA)n Simple_repeat Simple_repeat 1 60 0 5 1144 868 231 57 133 chr1 73385215 73385530 -123809902 + B4 SINE B4 2 292 0 5 1144 213 149 0 21 chr1 73386099 73386147 -123809285 + T-rich Low_complexity Low_complexity 2 48 0 5 1144 216 45 21 62 chr1 73386299 73386347 -123809085 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1144 21 0 0 0 chr1 73387101 73387122 -123808310 + AT_rich Low_complexity Low_complexity 1 21 0 5 1144 542 268 15 62 chr1 73387531 73387555 -123807877 - B4 SINE B4 0 292 270 5 1144 549 0 0 0 chr1 73387555 73387616 -123807816 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1144 276 59 59 0 chr1 73387616 73387666 -123807766 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1144 542 268 15 62 chr1 73387666 73387835 -123807597 - B4 SINE B4 -23 269 108 5 1144 327 271 14 0 chr1 73387984 73388074 -123807358 - ID4_ SINE ID -50 102 12 5 1144 304 310 40 10 chr1 73388156 73388257 -123807175 - B1F1 SINE Alu -39 110 7 5 1144 244 211 112 163 chr1 73389444 73389659 -123805773 - MER45B DNA Tip100 -34 1006 803 5 1144 480 275 112 0 chr1 73389661 73389821 -123805611 + MER2 DNA MER2_type 4 181 -164 5 1144 670 29 19 28 chr1 73389825 73389933 -123805499 + L1Md_F2 LINE L1 6474 6580 -2 5 1144 1180 350 73 57 chr1 73390069 73390863 -123804569 - MER45B DNA Tip100 -233 807 1 5 1144 641 291 117 114 chr1 73390984 73391546 -123803886 + MLT1F1 LTR MaLR 1 564 -5 5 1144 386 377 81 29 chr1 73392651 73393246 -123802186 - L1MC4 LINE L1 -1983 4231 3606 5 1144 359 318 108 50 chr1 73393754 73394140 -123801292 + MLT2B5 LTR ERVL 145 554 0 5 1144 229 91 0 0 chr1 73394325 73394358 -123801074 - U2 snRNA snRNA -155 33 1 5 1144 247 225 28 0 chr1 73394529 73394600 -123800832 - L1MC4 LINE L1 -3968 2247 2175 5 1144 300 321 76 36 chr1 73394654 73394877 -123800555 - L1MC4 LINE L1 -4373 1842 1611 5 1144 247 325 128 49 chr1 73394910 73395379 -123800053 - L1MC4 LINE L1 -5059 1156 651 5 1144 34 42 0 0 chr1 73395448 73395496 -123799936 + AT_rich Low_complexity Low_complexity 1 48 0 5 1144 599 161 8 0 chr1 73395764 73395882 -123799550 + CT-rich Low_complexity Low_complexity 3 121 0 5 1144 243 39 77 19 chr1 73396733 73396785 -123798647 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 5 1144 375 74 29 14 chr1 73396872 73396941 -123798491 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1144 232 167 24 0 chr1 73397307 73397349 -123798083 + B4A SINE B4 2 44 -248 5 1144 1055 305 64 48 chr1 73397354 73397809 -123797623 + Lx7 LINE L1 6645 7106 -590 5 1144 414 188 16 8 chr1 73398005 73398076 -123797356 + polypurine Low_complexity Low_complexity 1 71 0 5 1144 468 0 0 0 chr1 73398076 73398128 -123797304 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1144 414 188 16 8 chr1 73398128 73398185 -123797247 + polypurine Low_complexity Low_complexity 72 129 0 6 1144 32 26 0 0 chr1 73398249 73398288 -123797144 + AT_rich Low_complexity Low_complexity 1 39 0 6 1144 279 0 0 0 chr1 73399303 73399334 -123796098 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1144 594 0 0 0 chr1 73399334 73399399 -123796033 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1144 445 203 17 208 chr1 73399851 73400087 -123795345 + MER53 DNA hAT 2 192 -1 6 1144 1263 94 0 0 chr1 73400120 73400300 -123795132 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 17 270 81 0 0 chr1 73400300 73400337 -123795095 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 6 1145 579 304 52 21 chr1 73401185 73401474 -123793958 + MER33 DNA MER1_type 11 308 -16 6 1145 340 255 38 29 chr1 73401998 73402103 -123793329 + MLT1A1 LTR MaLR 291 396 -12 6 1145 402 172 10 20 chr1 73402250 73402351 -123793081 + CT-rich Low_complexity Low_complexity 2 101 0 6 1145 567 0 0 0 chr1 73402692 73402755 -123792677 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1145 987 90 0 55 chr1 73402816 73402981 -123792451 - L1Md_F2 LINE L1 -3 6579 6424 6 1145 18203 135 16 19 chr1 73402983 73406968 -123788464 - Lx LINE L1 -5 6649 2684 6 1145 978 137 189 0 chr1 73407033 73407223 -123788209 - URR1A DNA MER1_type 0 226 1 6 1145 298 235 47 0 chr1 73407455 73407540 -123787892 - PB1 SINE Alu -7 120 32 6 1145 225 301 73 93 chr1 73409419 73409624 -123785808 + MER63A DNA AcHobo 10 210 0 6 1145 186 43 0 0 chr1 73411541 73411564 -123783868 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 6 1145 590 273 131 48 chr1 73411588 73411961 -123783471 - L1MA8 LINE L1 -189 6102 5699 6 1145 1050 241 44 22 chr1 73413318 73413590 -123781842 - B4A SINE B4 -9 283 6 6 1145 241 338 93 12 chr1 73414157 73414319 -123781113 + LTR16C LTR ERVL 269 443 -46 6 1145 477 0 0 0 chr1 73415268 73415321 -123780111 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1145 627 276 133 39 chr1 73415348 73415515 -123779917 - B4 SINE B4 -12 280 84 6 1145 667 42 10 10 chr1 73415515 73415611 -123779821 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 6 1145 627 276 133 39 chr1 73415611 73415699 -123779733 - B4 SINE B4 -209 83 1 6 1145 779 334 72 70 chr1 73416399 73416956 -123778476 + MLT1F2 LTR MaLR 1 558 -2 6 1145 435 311 37 9 chr1 73418012 73418226 -123777206 - L1MB3 LINE L1 -33 6150 5931 6 1145 645 240 102 38 chr1 73418257 73418586 -123776846 + MTD LTR MaLR 46 419 0 6 1145 1236 278 92 65 chr1 73418595 73418719 -123776713 - L1MB3 LINE L1 -255 5928 5793 6 1145 2193 152 53 0 chr1 73418719 73419093 -123776339 + ORR1B1 LTR MaLR 1 394 0 6 1145 1236 285 83 47 chr1 73419093 73419921 -123775511 - L1MB3 LINE L1 -391 5792 4937 6 1145 652 354 74 49 chr1 73420126 73420377 -123775055 + MLT1F1 LTR MaLR 3 262 -307 6 1145 1068 280 10 30 chr1 73420377 73420675 -123774757 - B4 SINE B4 0 292 1 6 1145 652 354 74 49 chr1 73420675 73420976 -123774456 + MLT1F1 LTR MaLR 263 568 -1 6 1145 293 241 16 32 chr1 73422226 73422359 -123773073 - MTEb LTR MaLR 0 374 247 6 1145 347 247 0 23 chr1 73422842 73422929 -123772503 + ID_B1 SINE B4 84 168 -56 6 1145 333 270 34 51 chr1 73422929 73422959 -123772473 + PB1D10 SINE Alu 3 117 0 6 1145 195 42 0 0 chr1 73422984 73423008 -123772424 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1145 611 47 23 0 chr1 73423008 73423093 -123772339 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 6 1145 308 200 0 16 chr1 73424551 73424612 -123770820 - ID_B1 SINE B4 -2 222 163 6 1145 279 250 22 67 chr1 73424555 73424645 -123770787 - PB1D10 SINE Alu -6 111 26 6 1145 450 310 25 25 chr1 73427194 73427353 -123768079 - MLT1B LTR MaLR 0 390 232 6 1145 234 370 8 16 chr1 73428082 73428211 -123767221 + MER94 DNA AcHobo 1 128 -6 6 1145 536 321 125 13 chr1 73429283 73429676 -123765756 - Lx9 LINE L1 -46 7598 7034 6 1145 360 64 0 0 chr1 73429686 73429733 -123765699 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 6 1145 237 270 13 26 chr1 73429861 73429937 -123765495 + Lx9 LINE L1 7362 7436 -208 6 1145 587 249 149 6 chr1 73429979 73430153 -123765279 - B3 SINE B2 -13 203 5 6 1145 462 186 121 27 chr1 73430168 73430364 -123765068 - L1MC3 LINE L1 0 7785 7615 6 1145 232 235 21 86 chr1 73430445 73430538 -123764894 - L1MC3 LINE L1 -322 7463 7377 6 1145 2107 281 75 60 chr1 73430565 73432045 -123763387 + Lx7 LINE L1 4388 5915 -1781 6 1145 1214 42 0 0 chr1 73432064 73432207 -123763225 - B1_Mm SINE Alu 0 147 5 6 1145 182 238 0 35 chr1 73432222 73432309 -123763123 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 6 1145 207 271 196 0 chr1 73432949 73433056 -123762376 - MIR3 SINE MIR -7 201 74 6 1145 1306 248 119 9 chr1 73433810 73434183 -123761249 + MTD LTR MaLR 13 405 -14 6 1145 776 314 53 10 chr1 73434414 73434716 -123760716 - LTR53 LTR ERVL -13 506 192 6 1145 246 287 94 17 chr1 73435319 73435436 -123759996 + MER58C DNA MER1_type 2 127 -88 6 1145 1091 276 20 104 chr1 73435642 73436046 -123759386 + MTE2b LTR MaLR 1 370 -9 6 1145 229 362 17 0 chr1 73436773 73436889 -123758543 + MamSINE1 SINE tRNA 7 124 -166 6 1145 233 308 73 51 chr1 73437058 73437195 -123758237 - MLT1H LTR MaLR -17 532 393 6 1145 439 293 69 35 chr1 73437379 73437524 -123757908 - RSINE1 SINE B4 -14 151 2 6 1145 745 326 35 0 chr1 73437555 73437813 -123757619 + B4A SINE B4 4 270 -22 6 1145 381 43 0 0 chr1 73437815 73437862 -123757570 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1145 199 54 0 51 chr1 73438106 73438145 -123757287 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 6 1145 213 204 0 0 chr1 73439473 73439522 -123755910 + C-rich Low_complexity Low_complexity 3 51 0 6 1145 378 0 0 0 chr1 73439617 73439659 -123755773 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1145 654 281 167 12 chr1 73439692 73439937 -123755495 - B4 SINE B4 -6 286 4 6 1145 932 316 114 44 chr1 73440352 73441073 -123754359 - L1MC4 LINE L1 -864 7178 6408 6 1145 27 29 0 0 chr1 73441684 73441718 -123753714 + AT_rich Low_complexity Low_complexity 1 34 0 6 1145 1054 127 65 15 chr1 73442447 73442647 -123752785 - URR1A DNA MER1_type -15 211 2 6 1145 3115 68 0 43 chr1 73442737 73443155 -123752277 + MTB LTR MaLR 1 400 0 6 1145 247 271 73 22 chr1 73443157 73443293 -123752139 - ORR1E LTR MaLR -146 213 71 6 1145 267 318 208 49 chr1 73444478 73444766 -123750666 - MLT1A0 LTR MaLR -34 340 7 6 1145 338 279 0 0 chr1 73446257 73446325 -123749107 - ID4_ SINE ID -14 69 2 6 1145 1626 261 10 21 chr1 73446692 73447075 -123748357 + MTE2b LTR MaLR 1 379 0 6 1145 540 168 0 0 chr1 73447907 73448008 -123747424 + GA-rich Low_complexity Low_complexity 3 103 0 6 1145 365 306 45 75 chr1 73449258 73449535 -123745897 + MTEa LTR MaLR 98 377 -2 6 1145 1113 278 104 15 chr1 73449556 73449892 -123745540 - MTEa LTR MaLR -13 366 1 6 1145 854 45 0 9 chr1 73450202 73450314 -123745118 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 6 1145 460 293 199 64 chr1 73451638 73452222 -123743210 + L1MEg LINE L1 665 1327 -4757 6 1145 239 304 0 60 chr1 73452529 73452613 -123742819 - ID4_ SINE ID -3 80 2 6 1145 382 297 68 37 chr1 73452651 73452812 -123742620 - ID_B1 SINE B4 -51 173 8 6 1145 21 57 0 0 chr1 73453557 73453592 -123741840 + AT_rich Low_complexity Low_complexity 1 35 0 6 1145 277 311 0 0 chr1 73453654 73453715 -123741717 - tRNA-Ala-GCY_ tRNA tRNA -12 63 3 6 1145 197 324 119 24 chr1 73454695 73454839 -123740593 - MIRc SINE MIR -16 252 97 6 1145 4408 56 2 4 chr1 73454839 73455359 -123740073 - L1Md_F2 LINE L1 -1 6581 6063 6 1145 197 309 119 24 chr1 73455359 73455425 -123740007 - MIRc SINE MIR -172 96 19 6 1145 989 303 49 39 chr1 73455530 73455878 -123739554 - ORR1E LTR MaLR -7 372 1 6 1145 1978 144 92 11 chr1 73458660 73459017 -123736415 - ORR1B1 LTR MaLR -8 386 1 6 1145 332 358 96 34 chr1 73459024 73459232 -123736200 + MLT1K LTR MaLR 231 451 -144 6 1145 977 252 214 9 chr1 73459393 73459725 -123735707 - MTD LTR MaLR 0 419 20 6 1145 212 86 29 0 chr1 73460657 73460692 -123734740 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1145 180 111 0 0 chr1 73465264 73465291 -123730141 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 6 1145 180 311 0 22 chr1 73466207 73466253 -123729179 + MIR SINE MIR 65 109 -99 6 1145 10085 72 1 14 chr1 73466287 73467687 -123727745 - L1Md_Gf LINE L1 -3311 2575 1098 6 1145 17846 65 4 2 chr1 73467688 73469958 -123725474 + L1Md_F2 LINE L1 3312 5586 -297 6 1145 8011 60 20 7 chr1 73469959 73470941 -123724491 + L1Md_F2 LINE L1 5588 6582 0 6 1145 586 37 25 0 chr1 73471110 73471191 -123724241 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 1145 319 338 0 0 chr1 73471221 73471298 -123724134 - PB1D10 SINE Alu -34 83 7 6 1145 28 48 0 0 chr1 73471318 73471360 -123724072 + AT_rich Low_complexity Low_complexity 1 42 0 6 1145 339 85 0 0 chr1 73472804 73472851 -123722581 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 6 1145 225 277 141 84 chr1 73473036 73473178 -123722254 - MTB LTR MaLR -95 305 156 6 1145 396 335 100 65 chr1 73473451 73473792 -123721640 - MLT1E2 LTR MaLR -2 625 273 6 1145 27 49 0 0 chr1 73474078 73474119 -123721313 + AT_rich Low_complexity Low_complexity 1 41 0 6 1145 456 356 55 23 chr1 73474468 73474902 -123720530 - L1ME3B LINE L1 -277 5963 5516 6 1145 347 309 0 0 chr1 73474924 73475005 -123720427 - ID4 SINE ID -1 82 2 6 1145 337 223 30 145 chr1 73475025 73475156 -123720276 - PB1 SINE Alu -9 118 3 6 1145 246 245 0 0 chr1 73475296 73475349 -123720083 + PB1 SINE Alu 75 127 0 6 1145 327 352 44 16 chr1 73475455 73475637 -123719795 - L1ME3B LINE L1 -727 5446 5260 6 1145 183 129 0 0 chr1 73475659 73475690 -123719742 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 6 1145 224 167 0 20 chr1 73475685 73475734 -123719698 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1145 402 296 12 6 chr1 73475928 73476101 -123719331 + (TA)n Simple_repeat Simple_repeat 2 175 0 7 1145 347 314 104 28 chr1 73476318 73476567 -123718865 - L1ME3B LINE L1 -2329 3817 3550 6 1145 734 266 89 0 chr1 73477086 73477255 -123718177 - B3 SINE B2 -31 185 2 7 1145 467 273 76 41 chr1 73477263 73477734 -123717698 - L1M2 LINE L1 -3712 3133 2645 7 1145 258 359 0 0 chr1 73477920 73478079 -123717353 + A-rich Low_complexity Low_complexity 1 159 0 7 1145 241 253 65 54 chr1 73479105 73479197 -123716235 + MER5B DNA MER1_type 2 94 -84 7 1145 261 255 127 7 chr1 73479256 73479398 -123716034 - L1ME3B LINE L1 -4427 1739 1581 6 1145 284 48 24 0 chr1 73479751 73479793 -123715639 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1145 343 299 168 10 chr1 73479835 73480038 -123715394 - L1ME3B LINE L1 -4986 1256 1022 6 1145 370 306 124 5 chr1 73481084 73481278 -123714154 - Ricksha_c DNA MuDR -1245 803 587 7 1145 461 265 23 0 chr1 73481337 73481469 -123713963 - Ricksha_c DNA MuDR -1557 491 357 7 1145 273 256 23 58 chr1 73481780 73481867 -123713565 - MER20 DNA MER1_type -609 174 91 7 1145 249 283 62 42 chr1 73481985 73482081 -123713351 + RMER15 LTR ERVL 61 158 -417 7 1145 661 306 78 11 chr1 73482082 73482350 -123713082 + RMER15 LTR ERVL 276 561 -14 7 1145 198 214 33 67 chr1 73483204 73483264 -123712168 - L2b LINE L2 -212 3163 3106 7 1145 888 272 50 83 chr1 73483534 73483955 -123711477 - MLT2D LTR ERVL 0 414 8 7 1145 273 250 16 0 chr1 73484900 73484964 -123710468 + A-rich Low_complexity Low_complexity 2 66 0 7 1145 227 250 55 33 chr1 73485794 73485885 -123709547 + MIR SINE MIR 163 255 -7 7 1145 670 88 17 50 chr1 73487141 73487260 -123708172 - ORR1B1 LTR MaLR -239 155 41 7 1145 536 306 52 47 chr1 73487565 73487757 -123707675 - ID_B1 SINE B4 -23 201 9 7 1145 2355 189 22 2 chr1 73487762 73488165 -123707267 - MTC LTR MaLR -8 413 3 7 1145 1160 52 7 0 chr1 73488209 73488344 -123707088 + B1_Mm SINE Alu 1 136 -11 7 1145 657 38 0 0 chr1 73488356 73488436 -123706996 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 1145 366 42 0 0 chr1 73491566 73491614 -123703818 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1145 1297 186 9 0 chr1 73491670 73491890 -123703542 + URR1B DNA MER1_type 4 225 0 7 1145 242 294 18 27 chr1 73491907 73492019 -123703413 + CT-rich Low_complexity Low_complexity 4 114 0 7 1145 430 233 21 159 chr1 73492158 73492213 -123703219 + L1MB1 LINE L1 5776 5812 -488 7 1145 435 63 0 0 chr1 73492213 73492276 -123703156 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1145 441 233 21 159 chr1 73492276 73492409 -123703023 + L1MB1 LINE L1 5810 5938 -362 7 1145 2213 296 104 13 chr1 73492469 73493330 -123702102 - Lx8 LINE L1 -138 7335 6396 7 1145 477 0 0 0 chr1 73494157 73494210 -123701222 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1145 260 221 0 72 chr1 73497029 73497112 -123698320 + CT-rich Low_complexity Low_complexity 3 79 0 7 1145 461 321 105 60 chr1 73497828 73498179 -123697253 + MLT1A LTR MaLR 5 371 -3 7 1145 504 0 0 0 chr1 73498237 73498293 -123697139 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1145 366 42 0 0 chr1 73498770 73498818 -123696614 + (CAT)n Simple_repeat Simple_repeat 1 48 0 7 1145 226 0 59 0 chr1 73499530 73499564 -123695868 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1145 232 260 115 45 chr1 73500150 73500307 -123695125 + MLT1K LTR MaLR 356 523 -72 1 1145 1381 260 35 19 chr1 73500384 73500757 -123694675 + MTEa LTR MaLR 1 379 0 2 1145 465 99 0 0 chr1 73501492 73501573 -123693859 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1145 299 326 159 67 chr1 73502547 73502830 -123692602 + MamGypLTR3 LTR Gypsy 489 797 -42 4 1145 624 182 0 0 chr1 73504605 73504742 -123690690 + (CCCTA)n Simple_repeat Simple_repeat 1 137 0 5 1145 316 268 145 30 chr1 73504949 73505080 -123690352 + MLT1A1 LTR MaLR 133 278 -130 6 1145 312 231 12 37 chr1 73505142 73505223 -123690209 + MLT1A1 LTR MaLR 274 352 -56 6 1145 1760 249 81 22 chr1 73505270 73505619 -123689813 - Lx6 LINE L1 -210 7250 6888 7 1145 192 77 0 0 chr1 73505619 73505645 -123689787 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 8 1145 1760 249 81 22 chr1 73505645 73505754 -123689678 - Lx6 LINE L1 -573 6887 6766 7 1145 234 203 62 15 chr1 73505754 73505819 -123689613 + MLT1A1 LTR MaLR 338 405 -3 6 1145 509 88 12 0 chr1 73506035 73506115 -123689317 + (TC)n Simple_repeat Simple_repeat 1 81 0 9 1145 210 310 34 22 chr1 73506294 73506383 -123689049 - MIR3 SINE MIR -7 201 112 1 1145 655 251 55 57 chr1 73509252 73509505 -123685927 + MLT1D LTR MaLR 22 354 -300 1 1145 289 253 81 46 chr1 73509627 73509714 -123685718 + L2c LINE L2 3296 3385 -2 1 1145 341 403 25 42 chr1 73511369 73511605 -123683827 - MER115 DNA Tip100 -265 428 197 1 1145 216 179 0 0 chr1 73512084 73512123 -123683309 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1145 971 152 11 0 chr1 73512383 73512560 -123682872 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 1 1145 276 221 67 44 chr1 73512842 73512932 -123682500 + MLT1A1 LTR MaLR 4 95 -313 1 1145 267 330 64 0 chr1 73513046 73513140 -123682292 + PB1D7 SINE Alu 12 111 -9 1 1145 247 190 0 0 chr1 73513165 73513223 -123682209 + (TCTG)n Simple_repeat Simple_repeat 3 60 0 1 1145 20419 21 0 0 chr1 73513467 73515801 -123679631 + L1Md_T LINE L1 3253 5586 -297 1 1145 9119 7 0 0 chr1 73515801 73516797 -123678635 + L1Md_T LINE L1 5587 6582 0 1 1145 288 0 0 0 chr1 73516867 73516899 -123678533 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1145 247 326 0 0 chr1 73517807 73517902 -123677530 - L2 LINE L2 -1064 2355 2261 2 1145 263 338 48 30 chr1 73518254 73518422 -123677010 - MIRb SINE MIR -37 231 61 2 1145 894 242 53 75 chr1 73518598 73518879 -123676553 + B4A SINE B4 17 291 -1 2 1145 39596 51 14 1 chr1 73519274 73525454 -123669978 - L1Md_T LINE L1 -1 6584 226 2 1145 350 347 75 43 chr1 73525456 73525735 -123669697 + MLT1B LTR MaLR 80 390 0 2 1145 187 227 23 0 chr1 73527534 73527578 -123667854 + L2b LINE L2 3329 3373 -2 2 1145 1064 96 11 11 chr1 73528376 73528555 -123666877 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 2 1145 414 0 0 0 chr1 73529016 73529062 -123666370 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1145 243 0 0 0 chr1 73529062 73529089 -123666343 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 1145 459 0 0 0 chr1 73529123 73529174 -123666258 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1145 192 216 0 0 chr1 73529195 73529246 -123666186 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1145 642 100 64 0 chr1 73530273 73530383 -123665049 + B1_Mm SINE Alu 26 142 -5 3 1145 238 324 63 0 chr1 73530674 73530785 -123664647 - L4 LINE RTE -178 1851 1734 3 1145 325 294 22 0 chr1 73531126 73531262 -123664170 + MER33 DNA MER1_type 160 298 -26 3 1146 201 286 0 0 chr1 73531405 73531454 -123663978 + MIRb SINE MIR 184 232 -36 3 1146 669 25 0 0 chr1 73532376 73532455 -123662977 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1146 357 298 18 0 chr1 73532745 73532859 -123662573 - L1MC1 LINE L1 -335 5998 5883 3 1146 346 343 6 0 chr1 73533069 73533235 -123662197 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 1146 378 0 0 0 chr1 73533251 73533293 -123662139 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1146 369 310 7 7 chr1 73533421 73533564 -123661868 + (CA)n Simple_repeat Simple_repeat 1 143 0 3 1146 1604 140 24 34 chr1 73533576 73533948 -123661484 + ORR1A3 LTR MaLR 1 338 -8 4 1146 230 203 67 17 chr1 73534792 73534852 -123660580 - MTEa LTR MaLR -316 63 1 4 1146 429 287 62 14 chr1 73535275 73535420 -123660012 + MLT1K LTR MaLR 24 175 -420 4 1146 253 272 0 24 chr1 73535806 73535889 -123659543 + MLT1K LTR MaLR 489 569 -26 4 1146 36 19 0 19 chr1 73535944 73535978 -123659454 + AT_rich Low_complexity Low_complexity 1 34 0 4 1146 3601 44 9 0 chr1 73535978 73536408 -123659024 + L1Md_F2 LINE L1 6136 6569 -13 4 1146 36 19 0 19 chr1 73536408 73536427 -123659005 + AT_rich Low_complexity Low_complexity 1 19 0 4 1146 356 273 161 25 chr1 73538425 73538624 -123656808 - L1MB1 LINE L1 -13 6155 5930 4 1146 2601 170 83 15 chr1 73539942 73540031 -123655401 - RLTR20D LTR ERVK 0 568 479 4 1146 561 105 0 0 chr1 73540031 73540126 -123655306 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1146 2601 170 83 15 chr1 73540126 73540568 -123654864 - RLTR20D LTR ERVK -90 478 3 4 1146 526 219 0 0 chr1 73541083 73541179 -123654253 - RLTR16 LTR ERVK 0 505 410 4 1146 186 43 0 0 chr1 73541179 73541202 -123654230 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1146 207 0 0 0 chr1 73541251 73541274 -123654158 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1146 199 113 38 0 chr1 73541521 73541574 -123653858 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1146 466 255 21 46 chr1 73541997 73542068 -123653364 + RLTR16 LTR ERVK 377 477 -91 5 1146 387 0 0 0 chr1 73542068 73542111 -123653321 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 1146 561 192 0 0 chr1 73542111 73542203 -123653229 + RLTR16 LTR ERVK 413 504 -1 5 1146 22 0 0 0 chr1 73542245 73542267 -123653165 + AT_rich Low_complexity Low_complexity 1 22 0 5 1146 441 0 0 0 chr1 73543580 73543629 -123651803 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1146 538 302 44 0 chr1 73543634 73543793 -123651639 - B3A SINE B2 -24 174 9 5 1146 354 98 0 0 chr1 73543854 73543905 -123651527 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1146 21 0 0 0 chr1 73544973 73544994 -123650438 + AT_rich Low_complexity Low_complexity 1 21 0 5 1146 460 290 76 125 chr1 73545138 73545481 -123649951 + MLT1B LTR MaLR 8 333 -57 5 1146 407 238 268 62 chr1 73546027 73546206 -123649226 - ID_B1 SINE B4 -7 217 2 6 1146 702 84 0 0 chr1 73546742 73546849 -123648583 + (TG)n Simple_repeat Simple_repeat 1 107 0 6 1146 588 62 0 0 chr1 73546851 73546932 -123648500 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1146 615 39 0 0 chr1 73546932 73547009 -123648423 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1146 7598 78 2 4 chr1 73548313 73549473 -123645959 - L1_Mus1 LINE L1 0 6567 5409 6 1146 2507 90 3 0 chr1 73549455 73549800 -123645632 + L1_Mus1 LINE L1 5103 5448 -435 6 1146 636 14 0 0 chr1 73550040 73550113 -123645319 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 1146 1590 197 94 29 chr1 73550561 73550942 -123644490 - MTD LTR MaLR -13 406 1 6 1146 336 102 0 0 chr1 73551297 73551346 -123644086 + (TCCG)n Simple_repeat Simple_repeat 1 49 0 6 1146 387 0 0 0 chr1 73551346 73551388 -123644044 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1146 1648 212 70 28 chr1 73551576 73551794 -123643638 - MTD LTR MaLR -14 405 174 6 1146 4508 123 74 95 chr1 73551794 73552716 -123642716 - RMER17A2 LTR ERVK -4 902 1 7 1146 1648 212 70 28 chr1 73552716 73552885 -123642547 - MTD LTR MaLR -246 173 2 6 1146 289 318 117 15 chr1 73552982 73553247 -123642185 + L1ME5 LINE L1 5749 6040 -154 7 1146 312 302 39 8 chr1 73554559 73554686 -123640746 - MIR SINE MIR -92 170 40 7 1146 257 206 47 18 chr1 73555454 73555551 -123639881 - MTEb LTR MaLR -11 368 260 7 1146 714 24 0 0 chr1 73555916 73556000 -123639432 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 7 1146 227 313 156 10 chr1 73556161 73556327 -123639105 + MIR SINE MIR 43 233 -35 7 1146 298 276 73 40 chr1 73556649 73556826 -123638606 - L1ME5 LINE L1 -99 6095 5913 7 1146 602 258 8 0 chr1 73556861 73556985 -123638447 - B1_Mur1 SINE Alu -13 136 12 7 1146 382 328 14 43 chr1 73556985 73557001 -123638431 - ID_B1 SINE B4 -13 211 76 7 1146 212 122 0 24 chr1 73559789 73559831 -123635601 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 7 1146 1065 274 71 26 chr1 73561635 73561987 -123633445 - MTE2b LTR MaLR -11 368 1 8 1146 261 0 0 0 chr1 73563523 73563552 -123631880 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1146 304 167 123 14 chr1 73563617 73563690 -123631742 + ID4_ SINE ID 2 82 -1 8 1146 209 121 0 0 chr1 73563925 73563958 -123631474 + L2 LINE L2 3025 3057 -362 8 1146 716 315 12 12 chr1 73564590 73564834 -123630598 + B4A SINE B4 39 282 -10 8 1146 300 91 0 0 chr1 73564846 73564890 -123630542 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1146 186 43 0 0 chr1 73565020 73565043 -123630389 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1146 412 369 46 32 chr1 73565868 73566148 -123629284 + ORR1E LTR MaLR 19 302 -57 8 1146 5584 33 0 0 chr1 73566226 73566869 -123628563 - L1Md_F2 LINE L1 0 6582 5940 8 1146 285 98 0 0 chr1 73567501 73567542 -123627890 + (CAT)n Simple_repeat Simple_repeat 2 42 0 8 1146 747 243 7 0 chr1 73567836 73567984 -123627448 - B1_Mur1 SINE Alu 0 149 1 9 1146 186 338 37 62 chr1 73568210 73568371 -123627061 - MIR3 SINE MIR -12 196 40 9 1146 932 120 0 7 chr1 73569245 73569396 -123626036 + (GGAA)n Simple_repeat Simple_repeat 4 153 0 9 1146 2493 112 10 29 chr1 73569881 73570296 -123625136 + RLTR9E LTR ERVK 1 407 -2 9 1146 459 0 0 0 chr1 73570446 73570497 -123624935 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1146 752 251 106 50 chr1 73570619 73571188 -123624244 + L1MB7 LINE L1 3544 4163 -1983 9 1146 588 284 112 22 chr1 73571440 73571761 -123623671 + L1MB7 LINE L1 4637 4986 -1160 9 1146 183 42 0 0 chr1 73571871 73571895 -123623537 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1146 1646 162 81 34 chr1 73571994 73572352 -123623080 + ORR1C1 LTR MaLR 1 375 -3 9 1146 600 307 83 92 chr1 73572918 73573295 -123622137 + L1MB7 LINE L1 5107 5492 -692 9 1146 293 128 0 0 chr1 73573295 73573342 -123622090 - RMER10A LTR ERVL -395 47 1 9 1146 600 307 83 92 chr1 73573342 73573725 -123621707 + L1MB7 LINE L1 5493 5887 -297 9 1146 1715 132 53 63 chr1 73573725 73574139 -123621293 + RMER17C LTR ERVK 1 410 0 9 1146 600 323 92 55 chr1 73574139 73574394 -123621038 + L1MB7 LINE L1 5888 6151 -33 9 1146 468 311 70 61 chr1 73574818 73575146 -123620286 + ORR1E LTR MaLR 7 341 -29 1 1146 690 296 138 49 chr1 73575184 73575635 -123619797 - MLT1F1 LTR MaLR -7 562 72 1 1146 23 0 0 0 chr1 73576037 73576060 -123619372 + AT_rich Low_complexity Low_complexity 1 23 0 1 1146 441 0 0 0 chr1 73576742 73576791 -123618641 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1146 354 23 0 0 chr1 73577504 73577547 -123617885 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1146 796 266 45 0 chr1 73579477 73579676 -123615756 - B4A SINE B4 -4 288 81 1 1146 22 0 0 0 chr1 73579786 73579808 -123615624 + AT_rich Low_complexity Low_complexity 1 22 0 1 1146 387 0 0 0 chr1 73583163 73583206 -123612226 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1146 785 119 25 0 chr1 73583532 73583692 -123611740 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 1146 813 249 96 37 chr1 73584186 73584457 -123610975 + B4 SINE B4 2 288 -4 1 1146 312 143 0 0 chr1 73584469 73584525 -123610907 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1146 408 20 0 0 chr1 73586267 73586316 -123609116 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1146 531 0 0 0 chr1 73586316 73586374 -123609058 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1146 35 0 0 0 chr1 73586504 73586539 -123608893 + AT_rich Low_complexity Low_complexity 1 35 0 1 1146 447 250 0 0 chr1 73587347 73587527 -123607905 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1146 460 299 37 16 chr1 73588644 73588834 -123606598 - MLT1L LTR MaLR -7 603 410 1 1146 245 278 120 63 chr1 73589126 73589268 -123606164 - MLT2D LTR ERVL -92 322 173 1 1146 385 330 171 33 chr1 73590404 73590824 -123604608 - LTR33 LTR ERVL -8 507 30 1 1146 641 135 8 0 chr1 73591370 73591496 -123603936 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1146 214 228 55 0 chr1 73592440 73592505 -123602927 + L2c LINE L2 3260 3349 -77 1 1146 1023 206 9 41 chr1 73592744 73592962 -123602470 + B3 SINE B2 1 211 -5 1 1146 297 0 0 0 chr1 73594436 73594469 -123600963 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1146 474 211 48 0 chr1 73595026 73595130 -123600302 - L1M2 LINE L1 -1551 4592 4484 1 1146 240 35 0 0 chr1 73595144 73595173 -123600259 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1146 525 140 75 0 chr1 73595497 73595590 -123599842 - B1_Mur1 SINE Alu -7 142 43 1 1146 41545 12 1 0 chr1 73595733 73601934 -123593498 - L1Md_A LINE L1 0 6582 424 1 1146 353 276 153 6 chr1 73601935 73602092 -123593340 - L1M2 LINE L1 -1681 4462 4283 1 1146 669 267 145 42 chr1 73602082 73602531 -123592901 + L1MA5 LINE L1 5781 6275 -25 1 1146 22 0 0 0 chr1 73605482 73605504 -123589928 + AT_rich Low_complexity Low_complexity 1 22 0 1 1146 314 236 14 0 chr1 73605534 73605606 -123589826 - MamGypLTR2 LTR Gypsy -20 1169 1097 1 1146 394 88 0 29 chr1 73607802 73607872 -123587560 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1 1146 542 286 53 20 chr1 73608754 73608998 -123586434 - ORR1D2 LTR MaLR -30 354 110 1 1146 819 302 56 43 chr1 73609210 73609413 -123586019 + L1_Rod LINE L1 905 1103 -6505 1 1146 1434 54 11 11 chr1 73609413 73609599 -123585833 + B2_Mm2 SINE B2 2 187 -8 1 1146 8287 250 60 34 chr1 73609599 73610690 -123584742 + L1_Rod LINE L1 1104 2238 -3609 1 1146 228 35 0 0 chr1 73610690 73610719 -123584713 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 1146 8287 245 60 33 chr1 73610719 73612485 -123582947 + L1_Rod LINE L1 2239 4045 -1802 1 1146 664 224 78 28 chr1 73612486 73612541 -123582891 + L1_Rod LINE L1 4759 4813 -1034 1 1146 981 90 0 0 chr1 73612541 73612696 -123582736 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1146 664 224 78 28 chr1 73612696 73612819 -123582613 + L1_Rod LINE L1 4814 4945 -902 1 1146 387 0 0 0 chr1 73613328 73613371 -123582061 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1146 9925 150 44 11 chr1 73613937 73615212 -123580220 - L1_Mur2 LINE L1 -1070 4807 3478 1 1146 1206 118 33 11 chr1 73615212 73615392 -123580040 - B2_Mm2 SINE B2 -10 185 2 1 1146 9925 150 44 11 chr1 73615392 73615886 -123579546 - L1_Mur2 LINE L1 -2400 3477 2980 1 1146 1410 300 128 7 chr1 73615878 73616596 -123578836 - Lx8 LINE L1 -456 7017 6190 1 1146 354 45 0 0 chr1 73616598 73616642 -123578790 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1146 492 18 0 0 chr1 73616717 73616774 -123578658 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1146 272 120 20 0 chr1 73616774 73616824 -123578608 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1146 423 0 0 0 chr1 73617168 73617215 -123578217 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1146 208 333 161 6 chr1 73618289 73618444 -123576988 - MIR SINE MIR -38 224 46 1 1146 303 28 0 0 chr1 73618861 73618897 -123576535 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1146 578 319 34 5 chr1 73619187 73619392 -123576040 + B4A SINE B4 75 285 -7 1 1146 977 110 0 18 chr1 73620363 73620518 -123574914 - RMER19A LTR ERVK -595 142 1 1 1146 297 0 0 0 chr1 73621095 73621128 -123574304 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1146 793 273 53 60 chr1 73621149 73621546 -123573886 - L1MA4 LINE L1 -363 5937 5526 1 1146 502 171 11 22 chr1 73621639 73621819 -123573613 + (CAGAGA)n Simple_repeat Simple_repeat 1 178 0 1 1146 680 148 8 0 chr1 73622083 73622205 -123573227 + CT-rich Low_complexity Low_complexity 2 124 0 1 1146 204 116 0 65 chr1 73622743 73622789 -123572643 + GA-rich Low_complexity Low_complexity 2 44 0 1 1146 222 37 0 0 chr1 73622789 73622816 -123572616 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1146 225 0 0 0 chr1 73622816 73622840 -123572592 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1146 398 325 35 87 chr1 73625515 73625687 -123569745 + RSINE1 SINE B4 3 165 0 1 1146 230 339 57 94 chr1 73625687 73625707 -123569725 + B3A SINE B2 2 186 -12 1 1146 186 118 0 0 chr1 73627274 73627308 -123568124 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1146 352 151 27 48 chr1 73627310 73627456 -123567976 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 1 1146 994 266 23 0 chr1 73629164 73629378 -123566054 + B4A SINE B4 1 219 -73 1 1146 220 310 0 35 chr1 73629454 73629541 -123565891 + L2a LINE L2 3343 3426 0 1 1146 261 309 35 43 chr1 73629586 73629701 -123565731 - L2c LINE L2 -2 3385 3272 1 1146 1415 262 46 22 chr1 73631024 73631391 -123564041 + MTE2b LTR MaLR 4 379 0 1 1146 290 306 125 33 chr1 73631945 73632097 -123563335 + MER2 DNA MER2_type 1 166 -179 1 1146 7551 34 0 4 chr1 73632744 73633569 -123561863 + RLTR13B2 LTR ERVK 1 822 0 1 1146 1221 97 0 0 chr1 73633926 73634225 -123561207 + (GAA)n Simple_repeat Simple_repeat 1 299 0 1 1146 3582 30 2 2 chr1 73634586 73634982 -123560450 + MTA_Mm LTR MaLR 1 396 0 1 1146 614 284 14 0 chr1 73635025 73635173 -123560259 - MER63A DNA AcHobo -13 197 48 1 1146 190 349 151 0 chr1 73635576 73635662 -123559770 - MIR SINE MIR -68 140 42 1 1146 207 0 0 0 chr1 73635804 73635827 -123559605 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1146 781 312 98 0 chr1 73636347 73636581 -123558851 - B4A SINE B4 -34 258 2 1 1146 26 0 0 0 chr1 73639310 73639336 -123556096 + AT_rich Low_complexity Low_complexity 1 26 0 1 1146 232 279 65 0 chr1 73639363 73639517 -123555915 - L1M5 LINE L1 -1734 4412 4249 1 1146 303 261 45 0 chr1 73639986 73640074 -123555358 - MLT1K LTR MaLR -503 92 1 1 1146 247 320 68 30 chr1 73641048 73641180 -123554252 - L3b LINE CR1 -85 397 261 1 1146 238 353 49 74 chr1 73641269 73641341 -123554091 + Charlie8 DNA MER1_type 3 77 -2351 1 1146 183 42 0 0 chr1 73641341 73641365 -123554067 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1146 238 353 49 74 chr1 73641365 73641454 -123553978 + Charlie8 DNA MER1_type 78 160 -2268 1 1146 24 0 0 0 chr1 73642711 73642735 -123552697 + AT_rich Low_complexity Low_complexity 1 24 0 1 1146 2107 79 4 8 chr1 73642920 73643187 -123552245 + L1_Mus2 LINE L1 6300 6565 -1 1 1146 2543 102 6 0 chr1 73643338 73643663 -123551769 - ORR1A2 LTR MaLR 0 327 1 1 1146 24 0 0 0 chr1 73643674 73643698 -123551734 + AT_rich Low_complexity Low_complexity 1 24 0 1 1146 736 306 71 73 chr1 73643714 73643979 -123551453 + L1MEf LINE L1 1088 1352 -4848 1 1146 1229 180 13 22 chr1 73643979 73644206 -123551226 - URR1B DNA MER1_type 0 225 1 1 1146 736 306 71 73 chr1 73644206 73644431 -123551001 + L1MEf LINE L1 1353 1577 -4623 1 1146 348 260 42 43 chr1 73644702 73644840 -123550592 - MLT1E1A LTR MaLR -430 250 64 1 1146 303 245 48 19 chr1 73644903 73645007 -123550425 + L1MEf LINE L1 1677 1783 -4417 1 1146 288 0 0 0 chr1 73645512 73645544 -123549888 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1146 229 282 12 49 chr1 73645699 73645781 -123549651 + RLTR25B LTR ERVK 434 512 -516 1 1146 497 180 22 0 chr1 73645711 73645800 -123549632 + B1_Mus2 SINE Alu 45 135 -12 1 1146 192 40 0 0 chr1 73645800 73645825 -123549607 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1146 333 335 53 20 chr1 73647037 73647189 -123548243 - MIR SINE MIR -93 169 13 1 1146 284 269 73 40 chr1 73647264 73647388 -123548044 - MIRb SINE MIR -118 150 23 1 1146 392 319 35 0 chr1 73648250 73648363 -123547069 - ID_B1 SINE B4 -17 207 91 1 1146 782 259 265 18 chr1 73648537 73648973 -123546459 + L1MA5 LINE L1 4685 5240 -903 1 1146 396 0 0 0 chr1 73648973 73649017 -123546415 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1146 1375 284 130 31 chr1 73649017 73649515 -123545917 + L1MA5 LINE L1 5241 5779 -521 1 1146 378 0 0 0 chr1 73649515 73649557 -123545875 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1146 486 0 0 0 chr1 73649557 73649611 -123545821 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1146 1375 289 75 78 chr1 73649611 73650127 -123545305 + L1MA5 LINE L1 5801 6272 -28 1 1146 969 225 59 10 chr1 73650160 73650362 -123545070 + B3 SINE B2 1 212 -4 1 1146 430 314 39 17 chr1 73651569 73651747 -123543685 + MER121 Unknown Unknown 63 244 -168 1 1146 500 359 25 40 chr1 73653996 73654272 -123541160 + L1M4 LINE L1 407 678 -5864 1 1146 611 293 151 5 chr1 73654349 73654548 -123540884 + B4 SINE B4 1 228 -64 1 1146 2447 221 132 8 chr1 73654548 73654899 -123540533 + Lx9 LINE L1 6912 7279 -365 1 1146 1922 171 116 0 chr1 73654899 73655226 -123540206 + ORR1B2 LTR MaLR 1 365 -2 2 1146 2447 221 132 8 chr1 73655226 73655502 -123539930 + Lx9 LINE L1 7280 7617 -27 1 1146 591 206 6 155 chr1 73655518 73655679 -123539753 + RMER19C LTR ERVK 71 207 -404 2 1146 3293 147 40 130 chr1 73655690 73656396 -123539036 + RLTR26 LTR ERVK 1 642 0 2 1146 1678 213 5 118 chr1 73656404 73656836 -123538596 + RMER19C LTR ERVK 227 609 -2 2 1146 247 253 127 0 chr1 73656837 73656916 -123538516 + L1MB7 LINE L1 5931 6019 -155 2 1146 376 266 37 0 chr1 73657099 73657208 -123538224 + L1MB7 LINE L1 6041 6153 -31 2 1146 614 236 207 0 chr1 73657806 73657980 -123537452 - B3 SINE B2 -6 210 1 2 1146 510 309 60 4 chr1 73658627 73658830 -123536602 - L2b LINE L2 0 3426 3213 2 1146 378 0 0 0 chr1 73659140 73659182 -123536250 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1146 220 167 0 62 chr1 73659674 73659738 -123535694 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 2 1146 492 72 0 0 chr1 73659964 73660033 -123535399 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1146 3330 60 5 15 chr1 73660648 73661052 -123534380 + MTB LTR MaLR 1 400 0 2 1146 24 0 0 0 chr1 73661226 73661250 -123534182 + AT_rich Low_complexity Low_complexity 1 24 0 2 1146 1177 229 228 17 chr1 73661406 73661752 -123533680 - MTD LTR MaLR 0 419 1 2 1146 243 302 23 0 chr1 73661869 73661955 -123533477 + MLT1B LTR MaLR 16 103 -287 2 1146 285 296 108 29 chr1 73662039 73662178 -123533254 - L1MC4 LINE L1 -2363 5587 5438 2 143 255 321 135 59 chr1 73662370 73662741 -123532691 - L1M5 LINE L1 -1194 4952 4554 2 1147 225 329 29 35 chr1 73662913 73663083 -123532349 - L1MC4 LINE L1 -1779 4435 4267 2 1147 388 326 81 18 chr1 73664024 73664335 -123531097 + MLT1A0 LTR MaLR 13 365 0 2 1147 359 265 31 56 chr1 73664935 73665131 -123530301 - L1MC4 LINE L1 -5174 1041 851 2 1147 5197 126 82 11 chr1 73667271 73668113 -123527319 - RLTR13D6 LTR ERVK 0 902 1 2 1147 2702 259 92 11 chr1 73669137 73670035 -123525397 - RCHARR1 DNA MER1_type -3 971 1 2 1147 8701 28 1 0 chr1 73670208 73671751 -123523681 - L1Md_A LINE L1 0 6582 5039 2 1147 233 347 75 20 chr1 73673759 73673906 -123521526 + MER20 DNA MER1_type 1 155 -64 2 1147 899 273 27 0 chr1 73673906 73674126 -123521306 - Lx9 LINE L1 -898 6746 6521 2 1147 459 314 20 48 chr1 73674122 73674373 -123521059 + Lx9 LINE L1 7361 7604 -40 2 1147 2805 191 54 8 chr1 73675420 73676010 -123519422 + Lx9 LINE L1 6917 7533 -111 2 1147 623 231 14 14 chr1 73676146 73676291 -123519141 - B1_Mus2 SINE Alu -1 146 2 2 1147 354 250 9 71 chr1 73676192 73676304 -123519128 - MT2B LTR ERVL -344 257 153 2 1147 367 269 25 25 chr1 73677460 73677578 -123517854 + RSINE1 SINE B4 1 118 -47 2 1147 188 34 0 33 chr1 73677775 73677805 -123517627 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2 1147 648 165 37 66 chr1 73677807 73677943 -123517489 - B1_Mur4 SINE Alu -16 134 3 2 1147 1112 45 106 19 chr1 73678937 73679097 -123516335 + L1Md_F2 LINE L1 6408 6581 -1 2 1147 189 365 46 9 chr1 73679306 73679414 -123516018 - MIRc SINE MIR -81 187 76 2 1147 366 317 110 0 chr1 73679438 73679583 -123515849 - MER3 DNA MER1_type 0 209 49 2 1147 239 321 47 0 chr1 73679640 73679746 -123515686 + MER5A1 DNA MER1_type 21 131 -35 2 1147 200 184 184 0 chr1 73679789 73679838 -123515594 - MIR SINE MIR -59 149 92 2 1147 359 340 111 19 chr1 73681107 73681323 -123514109 + MLT1G LTR MaLR 3 238 -353 2 1147 257 327 20 0 chr1 73682054 73682155 -123513277 + CT-rich Low_complexity Low_complexity 5 107 0 2 1147 225 0 0 0 chr1 73683256 73683281 -123512151 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1147 906 285 41 30 chr1 73684230 73684498 -123510934 + B4A SINE B4 7 277 -15 2 1147 387 0 0 0 chr1 73684504 73684547 -123510885 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1147 210 91 0 0 chr1 73684548 73684581 -123510851 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1147 427 308 73 126 chr1 73684671 73685053 -123510379 - ORR1D2 LTR MaLR -3 367 6 2 1147 503 303 67 15 chr1 73685701 73685906 -123509526 - B3A SINE B2 -7 209 2 2 1147 836 318 11 7 chr1 73685995 73686277 -123509155 - B4A SINE B4 -8 284 2 2 1147 581 103 47 8 chr1 73686953 73687080 -123508352 + CT-rich Low_complexity Low_complexity 2 133 0 2 1147 360 64 0 0 chr1 73687077 73687124 -123508308 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1147 215 250 0 0 chr1 73688523 73688575 -123506857 + T-rich Low_complexity Low_complexity 1 52 0 2 1147 186 71 0 0 chr1 73689812 73689840 -123505592 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1147 198 321 0 0 chr1 73689848 73689901 -123505531 + MIRb SINE MIR 35 87 -181 2 1147 369 0 0 0 chr1 73690005 73690046 -123505386 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2 1147 237 281 39 59 chr1 73691123 73691225 -123504207 + L3b LINE CR1 126 225 -257 2 1147 423 269 88 15 chr1 73691304 73691440 -123503992 + RSINE1 SINE B4 20 165 0 2 1147 378 0 0 0 chr1 73691465 73691507 -123503925 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1147 306 50 0 0 chr1 73692030 73692070 -123503362 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 2 1147 935 146 168 25 chr1 73692099 73692296 -123503136 - URR1B DNA MER1_type 0 225 1 2 1147 1066 61 0 8 chr1 73692457 73692589 -123502843 - L1_Mm LINE L1 -189 5694 5564 2 1147 2889 167 99 20 chr1 73692585 73693242 -123502190 - Lx9 LINE L1 -1 7643 6935 2 1147 252 0 0 0 chr1 73693318 73693346 -123502086 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1147 39297 5 0 0 chr1 73693518 73698890 -123496542 + L1Md_A LINE L1 214 5586 -297 2 1147 9209 3 0 0 chr1 73698890 73699886 -123495546 + L1Md_A LINE L1 5587 6582 0 2 1147 417 39 0 0 chr1 73700571 73700622 -123494810 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 2 1147 512 211 129 30 chr1 73700624 73700756 -123494676 - B1_Mur3 SINE Alu -3 146 2 2 1147 276 30 0 0 chr1 73702117 73702150 -123493282 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1147 429 20 0 0 chr1 73703356 73703406 -123492026 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1147 1077 328 87 14 chr1 73703406 73704065 -123491367 + L1MD3 LINE L1 6987 7693 -302 2 1147 910 297 69 36 chr1 73704073 73704408 -123491024 - MTEa LTR MaLR -19 360 15 2 1147 354 297 54 15 chr1 73704412 73704542 -123490890 + L1MD3 LINE L1 7722 7856 -139 2 1147 330 26 0 0 chr1 73704542 73704581 -123490851 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1147 500 273 77 36 chr1 73704592 73704786 -123490646 - B3 SINE B2 -13 203 2 2 1147 408 71 0 0 chr1 73704839 73704895 -123490537 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1147 231 36 0 0 chr1 73704895 73704922 -123490510 + (CGTG)n Simple_repeat Simple_repeat 1 28 0 2 1147 180 0 0 0 chr1 73706167 73706187 -123489245 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1147 616 332 110 31 chr1 73706187 73706641 -123488791 + L1MEc LINE L1 100 589 -5811 2 1147 602 188 14 0 chr1 73706670 73706814 -123488618 + (CATATA)n Simple_repeat Simple_repeat 3 148 0 2 1147 624 225 0 0 chr1 73706859 73706979 -123488453 - MT2A LTR ERVL -69 464 345 2 1147 462 335 62 12 chr1 73707069 73707229 -123488203 - Tigger5 DNA MER2_type -2202 204 37 2 1147 572 258 12 41 chr1 73707265 73707435 -123487997 + L1MEc LINE L1 1655 1819 -4581 2 1147 295 264 63 9 chr1 73707874 73707985 -123487447 + L1MEc LINE L1 1815 1931 -4469 2 1147 831 218 38 52 chr1 73707987 73708200 -123487232 + B3 SINE B2 4 213 -3 2 1147 285 275 80 53 chr1 73708585 73708773 -123486659 + L1MEc LINE L1 2080 2272 -4128 2 1147 249 282 69 14 chr1 73708812 73708956 -123486476 + L1MEc LINE L1 2364 2515 -3804 2 1147 314 231 145 29 chr1 73709110 73709248 -123486184 + Lx8 LINE L1 7315 7468 -5 2 1147 229 323 15 0 chr1 73709476 73709541 -123485891 + L1MA10 LINE L1 6193 6258 -76 2 1147 189 139 0 0 chr1 73711177 73711220 -123484212 + (CACCC)n Simple_repeat Simple_repeat 4 46 0 2 1147 756 111 0 0 chr1 73711484 73711601 -123483831 + B1_Mur4 SINE Alu 24 140 -10 2 1147 305 100 20 0 chr1 73712141 73712191 -123483241 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1147 462 254 65 0 chr1 73713957 73714095 -123481337 + B1F SINE Alu 1 147 -2 2 1147 241 333 28 0 chr1 73714106 73714178 -123481254 + ID4_ SINE ID 3 76 -7 2 1147 500 226 7 70 chr1 73714212 73714355 -123481077 + ID_B1 SINE B4 86 219 -5 2 1147 375 23 0 0 chr1 73714387 73714431 -123481001 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2 1147 1089 63 0 0 chr1 73714433 73714575 -123480857 + (GGGGA)n Simple_repeat Simple_repeat 2 143 0 2 1147 423 0 0 0 chr1 73714576 73714623 -123480809 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2 1147 195 241 0 0 chr1 73714623 73714706 -123480726 + GA-rich Low_complexity Low_complexity 1 83 0 2 1147 697 286 173 11 chr1 73716218 73716477 -123478955 - L1M1 LINE L1 -519 5784 5475 2 1147 324 0 0 0 chr1 73716477 73716513 -123478919 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1147 697 286 173 11 chr1 73716513 73716617 -123478815 - L1M1 LINE L1 -829 5474 5362 2 1147 324 0 0 0 chr1 73716723 73716759 -123478673 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1147 641 339 91 0 chr1 73717778 73718020 -123477412 + MER54A LTR ERVL 1 264 -637 2 1147 521 249 85 42 chr1 73718030 73718219 -123477213 + ORR1E LTR MaLR 1 197 -162 2 1147 358 164 15 0 chr1 73718227 73718294 -123477138 + ORR1E LTR MaLR 309 376 -3 2 1147 1156 290 137 20 chr1 73718294 73718773 -123476659 + MER54A LTR ERVL 276 811 -90 2 1147 608 324 18 31 chr1 73718919 73719145 -123476287 + LTR33 LTR ERVL 8 231 -284 2 1147 873 85 16 48 chr1 73719271 73719457 -123475975 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1147 192 328 15 0 chr1 73719608 73719675 -123475757 - MIRb SINE MIR -89 179 112 2 1147 229 282 58 51 chr1 73720033 73720171 -123475261 + MIR3 SINE MIR 62 200 -8 2 1147 399 256 37 43 chr1 73720633 73720654 -123474778 + CYRA11_Mm Unknown Y-chromosome 151 312 -305 2 1147 828 141 7 0 chr1 73720654 73720796 -123474636 - URR1B DNA MER1_type 0 225 83 2 1147 532 136 0 43 chr1 73720844 73720936 -123474496 + B1_Mur2 SINE Alu 52 139 -10 2 1147 612 40 0 0 chr1 73720936 73721011 -123474421 + (GGA)n Simple_repeat Simple_repeat 2 76 0 2 1147 575 235 23 8 chr1 73721171 73721304 -123474128 + ID_B1 SINE B4 85 219 -5 2 1147 455 346 148 12 chr1 73721415 73721754 -123473678 - LTR16D LTR ERVL -15 636 252 2 1147 585 149 149 0 chr1 73721775 73721896 -123473536 + B1_Mur2 SINE Alu 6 144 -5 3 1147 2185 172 82 19 chr1 73722185 73722660 -123472772 - RMER6C LTR ERVK 0 690 186 3 1147 308 83 21 0 chr1 73723015 73723063 -123472369 + (CATA)n Simple_repeat Simple_repeat 4 52 0 3 1147 660 130 0 0 chr1 73724083 73724221 -123471211 + (TC)n Simple_repeat Simple_repeat 1 138 0 3 1147 351 0 0 0 chr1 73724221 73724260 -123471172 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1147 516 259 0 35 chr1 73724264 73724380 -123471052 - ID_B1 SINE B4 -31 193 82 3 1147 398 173 49 2 chr1 73725683 73725784 -123469648 + L1MA7 LINE L1 6182 6300 0 3 1147 192 77 0 0 chr1 73727846 73727872 -123467560 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1147 209 143 71 0 chr1 73728170 73728226 -123467206 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1147 203 414 48 5 chr1 73728756 73728943 -123466489 - L2c LINE L2 -170 3217 3023 3 1147 466 262 49 18 chr1 73729201 73729364 -123466068 + L1MA6 LINE L1 5917 6084 -216 3 1147 225 254 0 0 chr1 73729384 73729439 -123465993 + L1MA6 LINE L1 6234 6288 -12 3 1147 3457 38 0 2 chr1 73731322 73731719 -123463713 - MTA_Mm LTR MaLR 0 396 1 3 1147 378 0 0 0 chr1 73732277 73732319 -123463113 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1147 1170 83 0 0 chr1 73733199 73733344 -123462088 + B1_Mus2 SINE Alu 2 146 -1 3 1147 1027 288 74 60 chr1 73733520 73734185 -123461247 + L1MC3 LINE L1 6322 6995 -790 3 1147 438 240 9 19 chr1 73734220 73734326 -123461106 - RSINE1 SINE B4 -19 146 42 3 1147 408 20 0 0 chr1 73734355 73734404 -123461028 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1147 2495 273 41 31 chr1 73734410 73735158 -123460274 + Lx9 LINE L1 6358 7113 -531 3 1147 1523 165 68 158 chr1 73735158 73735569 -123459863 - ORR1C1 LTR MaLR 0 378 5 3 1147 314 171 28 14 chr1 73735673 73735744 -123459688 + L1MC3 LINE L1 7461 7532 -253 3 1147 491 159 19 0 chr1 73735744 73735851 -123459581 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 3 1147 1261 185 204 31 chr1 73736202 73736554 -123458878 - MTD LTR MaLR -5 414 2 3 1147 1278 251 30 62 chr1 73736680 73737049 -123458383 - ORR1E LTR MaLR -2 357 1 3 1147 751 201 13 0 chr1 73737673 73737822 -123457610 - URR1A DNA MER1_type 0 226 76 3 1147 916 241 65 7 chr1 73738774 73739067 -123456365 - RCHARR1 DNA MER1_type -249 725 416 3 1147 982 280 75 18 chr1 73739791 73740125 -123455307 + MLT1A0 LTR MaLR 13 365 0 3 1147 404 237 152 0 chr1 73740498 73740616 -123454816 + L1MD2 LINE L1 5893 6028 -331 3 1147 1103 253 66 68 chr1 73740858 73741223 -123454209 - ORR1D2 LTR MaLR -2 368 5 3 1147 492 18 0 0 chr1 73741236 73741293 -123454139 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1147 378 292 159 44 chr1 73743656 73744089 -123451343 + L1MDa LINE L1 1656 2138 -4495 3 1147 4368 219 95 7 chr1 73744081 73745340 -123450092 - RMER1A Other Other -4 1026 10 3 1147 504 120 0 0 chr1 73745757 73745857 -123449575 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 3 1147 318 302 67 18 chr1 73745868 73746033 -123449399 + L1MDa LINE L1 2132 2304 -4329 3 1147 243 0 0 0 chr1 73746054 73746081 -123449351 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1147 216 0 0 0 chr1 73746410 73746434 -123448998 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1147 226 257 26 39 chr1 73746916 73746993 -123448439 + B1F SINE Alu 74 149 0 3 1147 848 287 89 19 chr1 73747048 73747407 -123448025 + Lx9 LINE L1 7246 7629 -15 3 1147 241 321 0 0 chr1 73747463 73747519 -123447913 + ID4_ SINE ID 26 81 -2 3 1147 802 79 4 102 chr1 73747521 73747777 -123447655 + GA-rich Low_complexity Low_complexity 1 230 0 3 1147 310 291 85 33 chr1 73748037 73748190 -123447242 - RMER20A LTR ERVK -355 161 1 3 1147 492 195 15 15 chr1 73748190 73748320 -123447112 + GA-rich Low_complexity Low_complexity 1 130 0 3 1147 334 255 126 10 chr1 73748334 73748437 -123446995 + PB1D10 SINE Alu 1 115 -2 3 1147 754 240 36 104 chr1 73750043 73750322 -123445110 + B4 SINE B4 4 263 -29 3 1147 307 53 53 18 chr1 73750444 73750501 -123444931 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 3 1147 1949 193 83 20 chr1 73750556 73750683 -123444749 - Lx9 LINE L1 -1 7643 7489 3 1147 630 37 0 0 chr1 73750683 73750764 -123444668 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1147 1949 193 83 20 chr1 73750764 73751127 -123444305 - Lx9 LINE L1 -156 7488 7122 3 1147 267 200 50 0 chr1 73751603 73751663 -123443769 - MLT1A1 LTR MaLR 0 408 346 3 1147 453 300 189 37 chr1 73752870 73753140 -123442292 - ORR1E LTR MaLR -2 357 47 3 1147 4581 196 88 33 chr1 73753261 73754292 -123441140 + Lx6 LINE L1 5652 6739 -721 3 1147 34459 71 0 16 chr1 73754294 73759459 -123435973 + L1Md_F2 LINE L1 505 5586 -297 3 1147 8439 39 7 0 chr1 73759459 73760447 -123434985 + L1Md_F2 LINE L1 5587 6581 -1 3 1147 3698 210 18 18 chr1 73760488 73761219 -123434213 + Lx6 LINE L1 6719 7449 -11 3 1147 543 31 0 0 chr1 73762624 73762689 -123432743 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1147 184 245 41 0 chr1 73764710 73764759 -123430673 - MIR3 SINE MIR -40 168 118 3 1147 372 330 45 0 chr1 73765630 73765806 -123429626 + MIR SINE MIR 34 217 -45 3 1147 8450 39 0 5 chr1 73766970 73767968 -123427464 + L1Md_F2 LINE L1 5588 6580 -2 3 1147 184 259 195 12 chr1 73768021 73768057 -123427375 + MIRb SINE MIR 2 44 -224 3 1147 438 20 0 0 chr1 73768057 73768108 -123427324 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1147 184 259 195 12 chr1 73768108 73768153 -123427279 + MIRb SINE MIR 45 98 -170 3 1147 256 225 62 0 chr1 73768812 73768892 -123426540 + L2a LINE L2 3086 3170 -256 3 1147 411 348 0 36 chr1 73768936 73769103 -123426329 + LTR16B2 LTR ERVL 1 161 -301 3 1147 319 315 47 34 chr1 73769273 73769421 -123426011 - MIRc SINE MIR -117 151 2 3 1147 441 104 0 0 chr1 73769512 73769589 -123425843 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 3 1147 1010 238 136 24 chr1 73771620 73771952 -123423480 - MTE2b LTR MaLR 0 379 11 3 1147 201 74 0 0 chr1 73773614 73773641 -123421791 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1147 492 239 21 42 chr1 73774479 73774623 -123420809 + MLT1A1 LTR MaLR 268 408 0 3 1147 853 72 14 0 chr1 73774726 73774865 -123420567 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 3 1147 345 131 0 0 chr1 73774865 73774926 -123420506 + (CATA)n Simple_repeat Simple_repeat 1 61 0 3 1147 263 277 0 0 chr1 73775923 73775988 -123419444 + RMER15 LTR ERVL 1 65 -510 3 1147 2538 179 25 36 chr1 73776035 73776558 -123418874 + RMER15 LTR ERVL 42 558 -17 3 1147 446 229 19 0 chr1 73776943 73777048 -123418384 - MLT1A1 LTR MaLR 0 408 302 3 1147 247 250 0 0 chr1 73777112 73777160 -123418272 + polypurine Low_complexity Low_complexity 3 50 0 3 1147 655 73 18 9 chr1 73777197 73777307 -123418125 + L1_Mus3 LINE L1 6527 6637 -1 3 1147 225 123 15 30 chr1 73777767 73777834 -123417598 + T-rich Low_complexity Low_complexity 1 66 0 3 1147 29151 110 17 10 chr1 73777837 73781616 -123413816 - L1_Mus3 LINE L1 -13 6625 2889 3 1147 1155 48 0 0 chr1 73781616 73781762 -123413670 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 3 1147 29151 147 23 46 chr1 73781762 73784233 -123411199 - L1_Mus3 LINE L1 -2995 2888 416 3 1147 297 0 0 0 chr1 73784712 73784745 -123410687 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1147 191 281 30 45 chr1 73784838 73784905 -123410527 - L2b LINE L2 -2 3373 3308 3 1147 864 200 0 0 chr1 73786400 73786580 -123408852 + GA-rich Low_complexity Low_complexity 1 180 0 3 1147 2203 249 11 58 chr1 73787151 73787722 -123407710 + RMER15 LTR ERVL 32 575 0 3 1147 280 238 25 12 chr1 73787987 73788068 -123407364 - MLT1A1 LTR MaLR 0 408 327 3 1147 490 67 27 0 chr1 73790828 73790903 -123404529 + (GA)n Simple_repeat Simple_repeat 1 77 0 3 1147 888 188 51 0 chr1 73792669 73792866 -123402566 + URR1A DNA MER1_type 13 219 -7 3 1147 578 286 65 31 chr1 73793078 73793338 -123402094 + MLT2D LTR ERVL 1 269 -145 3 143 1381 86 11 0 chr1 73793357 73793543 -123401889 - B2_Mm1t SINE B2 -5 188 1 3 1148 2736 202 57 7 chr1 73793551 73794130 -123401302 - Lx9 LINE L1 -2 7642 7035 3 1148 4333 109 43 53 chr1 73794173 73794580 -123400852 - RMER17A LTR ERVK 0 751 344 3 1148 1143 61 0 0 chr1 73794580 73794728 -123400704 + (GGAGA)n Simple_repeat Simple_repeat 2 149 0 3 1148 4333 109 43 53 chr1 73794728 73795078 -123400354 - RMER17A LTR ERVK -408 343 1 3 1148 284 340 82 9 chr1 73795205 73795315 -123400117 + MTE2a LTR MaLR 16 133 -246 3 1148 285 100 0 0 chr1 73795319 73795369 -123400063 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 3 1148 500 192 125 0 chr1 73795369 73795473 -123399959 - B1_Mur1 SINE Alu -11 138 22 3 1148 295 334 60 59 chr1 73797007 73797283 -123398149 + MLT1J1 LTR MaLR 7 301 -147 3 1148 441 0 0 0 chr1 73797751 73797800 -123397632 + (TATAA)n Simple_repeat Simple_repeat 4 52 0 3 1148 186 71 0 0 chr1 73798014 73798042 -123397390 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1148 270 0 0 0 chr1 73798449 73798479 -123396953 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1148 186 71 0 0 chr1 73799144 73799172 -123396260 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1148 678 190 8 0 chr1 73800523 73800644 -123394788 - B1_Mur2 SINE Alu -10 139 18 3 1148 337 259 51 51 chr1 73800553 73800671 -123394761 - B4 SINE B4 -95 197 80 3 1148 491 292 27 60 chr1 73800921 73801147 -123394285 + B4A SINE B4 1 224 0 3 1148 628 97 40 0 chr1 73803151 73803275 -123392157 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 3 1148 306 269 92 8 chr1 73803348 73803479 -123391953 - MLT1E2 LTR MaLR -442 185 44 3 1148 233 325 52 17 chr1 73803483 73803599 -123391833 - ORR1E LTR MaLR -4 375 256 3 1148 521 277 47 26 chr1 73803613 73803806 -123391626 - ORR1E LTR MaLR -162 197 1 3 1148 353 345 69 41 chr1 73804249 73804469 -123390963 + LTR16C LTR ERVL 109 389 -149 3 1148 326 297 39 10 chr1 73804483 73804585 -123390847 + MER81 DNA AcHobo 2 106 -8 3 1148 234 322 24 24 chr1 73804619 73804743 -123390689 + LTR16C LTR ERVL 409 532 -6 3 1148 596 331 92 23 chr1 73805872 73806467 -123388965 + Arthur1 DNA Tip100 10 694 -3253 3 1148 661 264 89 19 chr1 73806465 73806778 -123388654 + Arthur1 DNA Tip100 3069 3403 -544 3 1148 1590 286 98 64 chr1 73806788 73807233 -123388199 + L1MB3 LINE L1 5288 5737 -446 4 1148 954 83 228 13 chr1 73807233 73807391 -123388041 + B2_Mm2 SINE B2 1 192 -3 4 1148 1590 286 98 64 chr1 73807391 73807653 -123387779 + L1MB3 LINE L1 5738 5995 -188 4 1148 545 41 40 40 chr1 73807653 73807754 -123387678 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 4 1148 1590 286 98 64 chr1 73807754 73807908 -123387524 + L1MB3 LINE L1 5996 6179 -4 4 1148 848 250 75 0 chr1 73807954 73808154 -123387278 - B3 SINE B2 0 216 2 4 1148 248 295 47 54 chr1 73808157 73808286 -123387146 + Arthur1 DNA Tip100 3420 3547 -400 3 1148 643 191 158 6 chr1 73808351 73808509 -123386923 + B3A SINE B2 1 182 -16 4 1148 509 340 25 25 chr1 73809664 73809987 -123385445 - L2 LINE L2 -844 2575 2253 4 1148 470 221 0 0 chr1 73810282 73810368 -123385064 + 5S rRNA rRNA 3 88 -33 4 1148 330 265 19 38 chr1 73810754 73810860 -123384572 + MER63A DNA AcHobo 45 148 -62 4 1148 269 308 59 15 chr1 73810947 73811082 -123384350 - MER103 DNA DNA -22 144 4 4 1148 216 97 0 0 chr1 73811135 73811166 -123384266 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1148 478 249 122 61 chr1 73812711 73812925 -123382507 - MIRb SINE MIR -41 227 1 4 1148 486 125 0 0 chr1 73813669 73813749 -123381683 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 4 1148 22 0 0 0 chr1 73813900 73813922 -123381510 + AT_rich Low_complexity Low_complexity 1 22 0 4 1148 228 67 0 0 chr1 73814133 73814163 -123381269 + (CCA)n Simple_repeat Simple_repeat 1 30 0 4 1148 818 202 50 44 chr1 73814192 73814373 -123381059 - ID_B1 SINE B4 -41 183 2 4 1148 291 222 13 40 chr1 73814893 73814968 -123380464 - L1M2 LINE L1 -543 5754 5682 4 1148 4229 74 0 11 chr1 73815114 73815674 -123379758 + L1_Mus4 LINE L1 6080 6633 -3 4 1148 881 268 15 99 chr1 73815792 73816186 -123379246 - MLT1B LTR MaLR 0 390 30 4 1148 401 298 152 0 chr1 73816395 73816586 -123378846 + MLT1D LTR MaLR 284 503 -2 4 1148 319 324 161 16 chr1 73816720 73816962 -123378470 + L1M5 LINE L1 4968 5244 -902 4 1148 919 232 123 23 chr1 73817562 73817911 -123377521 + MTD LTR MaLR 6 418 -1 4 1148 3645 52 40 0 chr1 73819057 73819503 -123375929 - L1_Mus1 LINE L1 -108 6459 5996 4 1148 4771 72 0 1 chr1 73819498 73820309 -123375123 + L1_Mus1 LINE L1 5231 6040 -527 4 1148 301 226 106 11 chr1 73820715 73820809 -123374623 + L1MA5 LINE L1 5915 6017 -283 4 1148 711 132 0 0 chr1 73821126 73821240 -123374192 + (TA)n Simple_repeat Simple_repeat 2 115 0 4 1148 292 250 143 17 chr1 73821378 73821553 -123373879 + L1MA5 LINE L1 6089 6285 -6 4 1148 272 239 216 0 chr1 73822741 73822829 -123372603 + L1MA6 LINE L1 4057 4163 -1977 4 1148 357 331 43 7 chr1 73822881 73823021 -123372411 + ID_B1 SINE B4 79 223 -1 4 1148 303 303 134 22 chr1 73823052 73823158 -123372274 + L1MA6 LINE L1 4276 4382 -1758 4 1148 369 0 0 0 chr1 73823158 73823199 -123372233 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 4 1148 664 273 160 3 chr1 73823199 73823567 -123371865 + L1MA6 LINE L1 4383 4869 -1274 4 1148 1321 208 76 84 chr1 73823567 73823674 -123371758 - MTD LTR MaLR -14 405 269 4 1148 2237 144 84 16 chr1 73823674 73824055 -123371377 - MTB_Mm LTR MaLR 0 407 1 4 1148 1321 246 92 11 chr1 73824055 73824331 -123371101 - MTD LTR MaLR -124 295 6 4 1148 776 297 42 19 chr1 73824336 73824648 -123370784 + L1MA6 LINE L1 4865 5183 -960 4 1148 521 291 90 34 chr1 73824649 73824916 -123370516 + B4A SINE B4 1 282 -10 4 1148 25 0 0 0 chr1 73825198 73825223 -123370209 + AT_rich Low_complexity Low_complexity 1 25 0 4 1148 1055 195 75 5 chr1 73825223 73825424 -123370008 + B3 SINE B2 2 216 0 4 1148 938 284 122 36 chr1 73825454 73825808 -123369624 + L1MA6 LINE L1 5410 5798 -502 4 1148 282 56 0 0 chr1 73825808 73825844 -123369588 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1148 938 284 122 36 chr1 73825844 73826070 -123369362 + L1MA6 LINE L1 5799 6040 -260 4 1148 221 345 24 32 chr1 73826219 73826342 -123369090 + L3 LINE CR1 4092 4213 -276 4 1148 424 325 66 15 chr1 73827091 73827350 -123368082 + MLT2B4 LTR ERVL 1 272 -284 4 1148 1533 63 16 0 chr1 73827529 73827720 -123367712 + B2_Mm2 SINE B2 2 195 0 4 1148 320 363 0 0 chr1 73827746 73827837 -123367595 + PB1D10 SINE Alu 1 91 -26 4 1148 552 260 182 5 chr1 73828324 73828533 -123366899 - MER2 DNA MER2_type -1 344 99 4 1148 785 143 14 0 chr1 73829294 73829434 -123365998 + GA-rich Low_complexity Low_complexity 3 144 0 4 1148 218 321 0 12 chr1 73830299 73830384 -123365048 + GA-rich Low_complexity Low_complexity 5 88 0 4 1148 885 289 24 24 chr1 73830488 73830779 -123364653 + B4A SINE B4 1 291 -1 4 1148 405 0 0 0 chr1 73830797 73830842 -123364590 + (CATA)n Simple_repeat Simple_repeat 4 48 0 4 1148 302 370 30 66 chr1 73831451 73831648 -123363784 - MER115 DNA Tip100 -262 431 242 4 1148 300 333 40 20 chr1 73832502 73832652 -123362780 - MER58A DNA MER1_type -63 161 9 4 1148 241 339 34 51 chr1 73833654 73833772 -123361660 + L2c LINE L2 3237 3352 -35 4 1148 387 283 197 46 chr1 73833825 73834044 -123361388 + MIR SINE MIR 3 254 -14 4 1148 239 258 82 51 chr1 73834092 73834190 -123361242 - Tigger1 DNA MER2_type -2003 415 315 4 1148 367 250 76 0 chr1 73834848 73834940 -123360492 + PB1D10 SINE Alu 17 115 -2 4 1148 397 231 0 0 chr1 73834943 73835021 -123360411 + ID4_ SINE ID 5 82 -1 4 1148 392 0 21 0 chr1 73835233 73835281 -123360151 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1148 1014 40 8 0 chr1 73835282 73835406 -123360026 - B1_Mus1 SINE Alu -13 135 11 4 1148 576 259 0 22 chr1 73835406 73835420 -123360012 - ID_B1 SINE B4 -13 211 77 4 1148 400 319 187 22 chr1 73835553 73835870 -123359562 + MLT1H1 LTR MaLR 17 386 -169 4 1148 562 296 140 27 chr1 73836001 73836638 -123358794 - L1ME3 LINE L1 -146 6016 5304 4 1148 521 361 109 24 chr1 73836650 73836990 -123358442 - L1ME3 LINE L1 -861 5285 4917 4 1148 594 219 13 122 chr1 73837132 73837246 -123358186 + RSINE1 SINE B4 27 127 -38 4 1148 432 0 0 0 chr1 73837246 73837294 -123358138 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1148 594 219 13 122 chr1 73837294 73837335 -123358097 + RSINE1 SINE B4 128 165 0 4 1148 190 222 0 0 chr1 73837821 73837857 -123357575 - L3 LINE CR1 -1 4488 4453 4 1148 193 219 83 143 chr1 73840190 73840323 -123355109 + L3 LINE CR1 29 153 -4336 4 1148 649 215 10 51 chr1 73841208 73841404 -123354028 - Lx4B LINE L1 -2 7056 6869 4 1148 240 35 0 0 chr1 73841415 73841444 -123353988 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1148 706 330 100 60 chr1 73841483 73841764 -123353668 - B4 SINE B4 0 292 1 4 1148 604 291 36 80 chr1 73841944 73842032 -123353400 + CYRA11_Mm Unknown Y-chromosome 88 162 -455 4 1148 1437 120 18 27 chr1 73842032 73842255 -123353177 - URR1B DNA MER1_type -3 222 2 4 1148 211 386 70 21 chr1 73842411 73842554 -123352878 + L2b LINE L2 3225 3374 -1 4 1148 677 187 32 19 chr1 73842749 73843067 -123352365 + (TG)n Simple_repeat Simple_repeat 1 322 0 4 1148 339 138 0 33 chr1 73843166 73843256 -123352176 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1148 234 0 0 0 chr1 73843736 73843762 -123351670 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1148 495 308 132 0 chr1 73843775 73843934 -123351498 - B3A SINE B2 -17 181 2 4 1148 360 303 0 0 chr1 73844142 73844320 -123351112 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1148 288 0 0 0 chr1 73845088 73845120 -123350312 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1148 303 93 0 0 chr1 73845539 73845582 -123349850 + (TCC)n Simple_repeat Simple_repeat 3 45 0 4 1148 369 192 0 0 chr1 73847059 73847106 -123348326 + polypurine Low_complexity Low_complexity 4 50 0 4 1148 1361 56 6 0 chr1 73847106 73847285 -123348147 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1148 369 192 0 0 chr1 73847285 73847315 -123348117 + polypurine Low_complexity Low_complexity 51 80 0 4 1148 831 183 0 0 chr1 73848007 73848187 -123347245 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1148 2019 257 26 20 chr1 73848342 73848878 -123346554 + Lx8 LINE L1 6905 7443 -30 4 1148 375 289 123 10 chr1 73848933 73849108 -123346324 + MLT1E LTR MaLR 392 593 -31 4 1148 492 304 43 41 chr1 73849067 73849376 -123346056 + MLT2C1 LTR ERVL 81 389 -8 4 1148 247 295 0 0 chr1 73849860 73849938 -123345494 - ID4_ SINE ID -3 80 3 4 1148 1101 192 9 42 chr1 73850202 73850419 -123345013 + URR1A DNA MER1_type 3 212 -14 4 1148 202 295 83 10 chr1 73850487 73850583 -123344849 + L2b LINE L2 3019 3121 -254 4 1148 768 77 0 0 chr1 73851344 73851448 -123343984 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 4 1148 186 310 33 44 chr1 73852377 73852468 -123342964 - L2c LINE L2 -3 3384 3295 4 1148 229 292 142 55 chr1 73852952 73853079 -123342353 - L2c LINE L2 0 3387 3250 4 1148 1013 277 35 20 chr1 73855770 73856024 -123339408 + B4 SINE B4 33 290 -2 4 1148 354 45 0 0 chr1 73856805 73856849 -123338583 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1148 222 244 0 0 chr1 73856851 73856933 -123338499 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1148 240 130 0 0 chr1 73856961 73857007 -123338425 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1148 198 0 0 0 chr1 73857007 73857029 -123338403 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1148 477 0 0 0 chr1 73858808 73858861 -123336571 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1148 1437 61 0 6 chr1 73859751 73859932 -123335500 + B2_Mm2 SINE B2 2 181 -14 4 1148 611 48 0 0 chr1 73859932 73860016 -123335416 + L1Md_T LINE L1 6499 6582 0 4 1148 212 410 50 0 chr1 73860019 73860158 -123335274 + L3 LINE CR1 4121 4266 -223 4 1148 1056 282 142 40 chr1 73860869 73861081 -123334351 - L1ME1 LINE L1 0 6179 5962 4 1148 234 0 0 0 chr1 73861081 73861107 -123334325 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 4 1148 1056 282 142 40 chr1 73861107 73861471 -123333961 - L1ME1 LINE L1 -218 5961 5545 4 1148 213 328 178 52 chr1 73861591 73861726 -123333706 + L3 LINE CR1 4331 4482 -7 4 1148 436 247 41 10 chr1 73862125 73862223 -123333209 + MIRb SINE MIR 31 131 -137 4 1148 280 172 14 72 chr1 73863860 73863929 -123331503 + LFSINE_Vert SINE SINE 374 438 -21 4 1148 270 0 0 0 chr1 73864308 73864338 -123331094 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1148 231 88 0 0 chr1 73864801 73864835 -123330597 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1148 184 264 38 0 chr1 73864881 73864934 -123330498 - L2a LINE L2 -40 3386 3332 4 1148 273 328 84 91 chr1 73865542 73865827 -123329605 - ORR1E LTR MaLR -13 346 64 5 1148 537 247 13 52 chr1 73867844 73867998 -123327434 - B1F SINE Alu -1 148 1 5 1148 207 69 0 0 chr1 73868200 73868229 -123327203 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1148 260 311 60 43 chr1 73868452 73868637 -123326795 - L1M5 LINE L1 -308 5816 5629 5 1148 418 240 89 76 chr1 73870512 73870670 -123324762 + RSINE1 SINE B4 6 165 0 5 1148 38 0 0 0 chr1 73870694 73870732 -123324700 + AT_rich Low_complexity Low_complexity 1 38 0 5 1148 308 326 20 12 chr1 73871419 73871543 -123323889 + MIR SINE MIR 14 141 -135 5 1148 220 318 104 15 chr1 73871817 73871884 -123323548 + MIRc SINE MIR 79 151 -117 5 1148 486 0 0 0 chr1 73871939 73871993 -123323439 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1148 183 42 0 0 chr1 73874842 73874866 -123320566 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 5 1148 414 310 32 60 chr1 73874914 73875130 -123320302 + MLT1H LTR MaLR 340 549 0 5 1148 1013 251 35 38 chr1 73876557 73876847 -123318585 + B4 SINE B4 1 289 -3 5 1148 261 255 39 10 chr1 73878162 73878265 -123317167 + CT-rich Low_complexity Low_complexity 1 106 0 5 1148 244 189 27 0 chr1 73878284 73878358 -123317074 + CT-rich Low_complexity Low_complexity 3 78 0 5 1148 349 236 46 20 chr1 73878377 73878528 -123316904 + CT-rich Low_complexity Low_complexity 2 156 0 5 1148 1217 47 47 0 chr1 73879102 73880175 -123315257 + (TGGA)n Simple_repeat Simple_repeat 1 1123 0 5 1148 243 97 0 0 chr1 73880945 73880976 -123314456 + Lx9 LINE L1 7336 7366 -278 5 1148 206 77 25 25 chr1 73881155 73881195 -123314237 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1148 1025 171 68 59 chr1 73881195 73881431 -123314001 - RLTR14 LTR ERV1 -143 239 2 5 1148 393 58 0 0 chr1 73881574 73881626 -123313806 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1148 443 245 18 130 chr1 73881744 73881973 -123313459 + RLTR18B LTR ERVK 1 190 -322 5 1148 386 301 144 25 chr1 73882051 73882252 -123313180 + RLTR18 LTR ERVK 123 347 -165 5 1148 190 95 0 45 chr1 73882252 73882296 -123313136 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 5 1148 607 245 77 32 chr1 73882302 73882458 -123312974 + RLTR18 LTR ERVK 452 614 -2 5 1148 834 171 155 0 chr1 73882458 73882639 -123312793 + L1_Mur3 LINE L1 2601 2809 -3071 5 1148 566 291 10 98 chr1 73882766 73882960 -123312472 - B4A SINE B4 -10 282 106 5 1148 417 20 0 0 chr1 73883000 73883050 -123312382 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1148 559 294 40 34 chr1 73883070 73883246 -123312186 - B4A SINE B4 0 292 116 5 1148 368 217 119 28 chr1 73883240 73883349 -123312083 - MT2A LTR ERVL -230 303 185 5 1148 653 270 61 36 chr1 73883303 73883499 -123311933 + B4A SINE B4 92 292 0 5 1148 3502 23 5 0 chr1 73883708 73884102 -123311330 - MTA_Mm LTR MaLR 0 396 1 5 1148 187 405 0 0 chr1 73884907 73884986 -123310446 - MIRc SINE MIR -112 156 78 5 1148 297 323 144 45 chr1 73885666 73885867 -123309565 + MIR SINE MIR 14 234 -28 5 1148 239 333 0 0 chr1 73887630 73887693 -123307739 - MLT1A LTR MaLR -281 93 31 5 1148 2812 75 55 38 chr1 73887738 73888138 -123307294 - MTB_Mm LTR MaLR 0 407 1 5 1148 500 277 53 15 chr1 73888170 73888302 -123307130 + MER63A DNA AcHobo 19 155 -55 5 1148 2593 119 18 8 chr1 73888308 73888706 -123306726 - MTC LTR MaLR -10 411 10 5 1148 333 0 0 0 chr1 73888726 73888763 -123306669 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1148 684 189 39 0 chr1 73888790 73888917 -123306515 - B1_Mur1 SINE Alu -13 136 5 5 1148 2169 210 27 34 chr1 73889839 73890313 -123305119 + RMER20B LTR ERVK 1 471 -156 5 1148 225 0 0 0 chr1 73890801 73890826 -123304606 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 1148 410 283 158 31 chr1 73891183 73891442 -123303990 + B4A SINE B4 1 292 0 5 1148 230 374 140 31 chr1 73892809 73893066 -123302366 + LTR33A LTR ERVL 3 287 -233 5 1148 234 325 24 40 chr1 73893668 73893793 -123301639 - LTR16D LTR ERVL -266 385 263 5 1148 242 306 107 58 chr1 73894276 73894843 -123300589 + L2a LINE L2 2568 3166 -260 5 1148 974 136 0 39 chr1 73895409 73895562 -123299870 + B1_Mus1 SINE Alu 2 148 0 5 1148 849 241 65 68 chr1 73896287 73896626 -123298806 + RLTR15 LTR ERVK 1 338 -21 5 1148 1029 100 131 0 chr1 73897647 73897807 -123297625 + B2_Mm2 SINE B2 1 181 -14 5 1148 427 89 278 58 chr1 73897835 73897952 -123297480 + B2_Mm2 SINE B2 47 191 -4 5 1148 2143 154 43 16 chr1 73898070 73898440 -123296992 + RLTR14 LTR ERV1 3 382 0 5 1148 2322 78 132 11 chr1 73898524 73898872 -123296560 + RLTR10 LTR ERVK 1 390 0 5 1148 234 0 0 0 chr1 73899114 73899140 -123296292 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 5 1148 205 263 200 10 chr1 73899374 73899474 -123295958 + MIRb SINE MIR 24 142 -126 5 1148 620 110 25 12 chr1 73900120 73900283 -123295149 + (TTAGGG)n Simple_repeat Simple_repeat 1 164 0 5 1148 189 0 0 0 chr1 73900372 73900393 -123295039 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1148 404 301 21 56 chr1 73902666 73902810 -123292622 - MIR SINE MIR -123 139 1 5 1148 275 195 37 193 chr1 73905041 73905180 -123290252 - MLT1F2 LTR MaLR 0 680 466 5 1148 431 301 45 21 chr1 73905284 73905448 -123289984 - MLT1F1 LTR MaLR -328 241 68 5 1148 197 286 18 0 chr1 73907870 73907926 -123287506 - MIR SINE MIR -91 171 115 5 1148 2368 67 118 0 chr1 73907999 73908583 -123286849 - L1_Mus3 LINE L1 -348 6290 5638 5 1148 2539 57 48 0 chr1 73908583 73908918 -123286514 + L1_Mus3 LINE L1 6288 6638 0 5 1148 529 146 44 11 chr1 73910119 73910209 -123285223 + RLTR19-int LTR ERVK 3098 3190 -2947 5 1148 3730 218 46 37 chr1 73910356 73911276 -123284156 + RLTR19-int LTR ERVK 3454 4381 -1756 5 1148 217 321 0 13 chr1 73912014 73912093 -123283339 + GA-rich Low_complexity Low_complexity 6 83 0 5 1148 605 270 42 21 chr1 73912094 73912287 -123283145 + MLT1A LTR MaLR 1 197 -177 5 1148 5293 125 17 5 chr1 73912898 73913716 -123281716 - L1_Mm LINE L1 -211 5672 4845 5 1148 323 352 13 23 chr1 73913886 73914058 -123281374 - L1MDa LINE L1 -4865 1768 1599 5 1148 21 0 0 0 chr1 73914071 73914092 -123281340 + AT_rich Low_complexity Low_complexity 1 21 0 5 1148 230 267 0 0 chr1 73914252 73914312 -123281120 + (TTA)n Simple_repeat Simple_repeat 2 61 0 5 1148 211 257 171 0 chr1 73914314 73914384 -123281048 - B1F1 SINE Alu -20 129 48 5 1148 4462 12 4 0 chr1 73914431 73914922 -123280510 - MT2_Mm LTR ERVL 0 493 1 5 1148 319 0 0 0 chr1 73914922 73914960 -123280472 - MERVL-int LTR ERVL 0 5485 5448 5 1148 403 167 46 35 chr1 73914960 73915047 -123280385 - ORR1A3-int LTR MaLR -1323 640 553 5 1148 41422 16 14 0 chr1 73915047 73920333 -123275099 - MERVL-int LTR ERVL -125 5360 1 5 1148 4462 12 4 0 chr1 73920333 73920824 -123274608 - MT2_Mm LTR ERVL 0 493 1 5 1148 360 297 17 0 chr1 73920993 73921111 -123274321 - L1MC4a LINE L1 -236 7646 7527 5 1148 568 229 140 45 chr1 73921111 73921289 -123274143 + B3A SINE B2 1 195 -3 5 1148 234 0 0 0 chr1 73921471 73921497 -123273935 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1148 207 0 0 0 chr1 73921517 73921540 -123273892 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1148 251 209 0 0 chr1 73921599 73921642 -123273790 + B1_Mm SINE Alu 91 133 -14 5 1148 366 270 84 84 chr1 73921630 73921645 -123273787 + B4 SINE B4 70 84 -208 5 1148 387 0 0 0 chr1 73921645 73921688 -123273744 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1148 366 270 84 84 chr1 73921688 73921826 -123273606 + B4 SINE B4 85 223 -69 5 1148 801 169 37 0 chr1 73921692 73921828 -123273604 + B1_Mus1 SINE Alu 8 148 0 5 1148 402 21 0 0 chr1 73921899 73921946 -123273486 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1148 576 42 0 0 chr1 73922222 73922293 -123273139 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 5 1148 733 295 144 40 chr1 73922293 73922912 -123272520 + L1MEf LINE L1 347 1030 -5170 5 1148 221 109 65 0 chr1 73923002 73923041 -123272391 + A-rich Low_complexity Low_complexity 3 44 0 5 1148 2803 48 0 0 chr1 73923041 73923383 -123272049 + L1Md_F2 LINE L1 6234 6582 0 5 1148 1122 125 0 0 chr1 73923405 73923581 -123271851 + (GAGAA)n Simple_repeat Simple_repeat 1 176 0 5 1148 452 326 95 8 chr1 73923652 73923997 -123271435 - MLT1D LTR MaLR -93 412 1 5 1148 982 291 74 51 chr1 73924095 73924489 -123270943 - MTD LTR MaLR -16 403 1 5 1149 430 381 23 14 chr1 73924861 73925082 -123270350 + ERVL-E-int LTR ERVL 4478 4700 -967 5 1149 243 0 0 0 chr1 73926073 73926100 -123269332 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1149 755 209 20 0 chr1 73926103 73926251 -123269181 - B3A SINE B2 -47 151 1 5 1149 891 230 104 42 chr1 73926637 73926877 -123268555 - MLT1A0 LTR MaLR -22 343 89 5 1149 697 249 28 70 chr1 73926887 73927172 -123268260 - RLTR12B LTR ERVK -14 514 242 5 1149 267 31 0 0 chr1 73927172 73927204 -123268228 + (CCCCCT)n Simple_repeat Simple_repeat 1 32 0 5 1149 1780 147 213 42 chr1 73927208 73927663 -123267769 - RMER16 LTR ERVK 0 533 1 5 1149 11692 99 46 13 chr1 73927663 73929379 -123266053 - RMER16-int LTR ERVK 0 5406 3634 5 1149 234 218 127 0 chr1 73929381 73929436 -123265996 + MLT1J1 LTR MaLR 82 143 -301 5 1149 1599 152 30 161 chr1 73929519 73929919 -123265513 - ORR1A4 LTR MaLR -8 321 1 5 1149 4375 49 19 21 chr1 73930041 73930604 -123264828 + LTRIS2 LTR ERV1 3 564 0 5 1149 1830 202 17 14 chr1 73930832 73931184 -123264248 + MTC LTR MaLR 1 353 -68 5 1149 379 234 54 48 chr1 73931373 73931539 -123263893 + L1MDa LINE L1 2205 2371 -4262 5 1149 1039 229 74 17 chr1 73931528 73931825 -123263607 + Lx9 LINE L1 7227 7540 -104 5 1149 36012 35 0 0 chr1 73931824 73937453 -123257979 + L1Md_T LINE L1 1 5589 -297 5 1149 9203 4 0 0 chr1 73937453 73938449 -123256983 + L1Md_T LINE L1 5590 6585 0 5 1149 314 135 0 0 chr1 73938588 73938640 -123256792 - B3 SINE B2 -1 215 164 5 1149 280 117 133 0 chr1 73938642 73938702 -123256730 - L1_Rod LINE L1 -4 5843 5776 5 1149 448 283 9 0 chr1 73938702 73938815 -123256617 - B3 SINE B2 -70 146 33 5 1149 1438 61 0 6 chr1 73938815 73938996 -123256436 + B2_Mm2 SINE B2 2 181 -14 6 1149 492 18 0 0 chr1 73938998 73939055 -123256377 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1149 1059 71 0 0 chr1 73939055 73939196 -123256236 + (GGAA)n Simple_repeat Simple_repeat 4 144 0 6 1149 881 222 81 45 chr1 73939345 73939567 -123255865 + MTE-int LTR MaLR 755 984 -596 6 1149 1067 221 14 0 chr1 73939589 73939797 -123255635 + B3 SINE B2 5 215 -1 6 1149 782 212 22 27 chr1 73939812 73939996 -123255436 - Lx9 LINE L1 -1681 5963 5781 6 1149 3358 43 34 2 chr1 73939996 73940413 -123255019 - RLTR1B LTR ERV1 -82 430 1 6 1149 1648 225 65 37 chr1 73940413 73940842 -123254590 - Lx9 LINE L1 -98 5749 5309 6 1149 599 172 16 57 chr1 73940852 73940975 -123254457 - PB1D9 SINE Alu -1 119 2 6 1149 294 204 40 111 chr1 73940888 73940987 -123254445 - MT2B LTR ERVL -358 243 152 6 1149 1789 234 42 14 chr1 73941091 73941578 -123253854 + Lx9 LINE L1 6061 6688 -956 6 1149 699 116 64 0 chr1 73941578 73941707 -123253725 + B1_Mus2 SINE Alu 1 149 -1 6 1149 27562 100 65 15 chr1 73941713 73947775 -123247657 + L1_Mus1 LINE L1 184 6566 -1 6 1149 189 159 0 0 chr1 73949528 73949572 -123245860 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 6 1149 698 97 9 0 chr1 73950227 73950340 -123245092 + (CA)n Simple_repeat Simple_repeat 2 115 0 6 1149 827 285 68 27 chr1 73950865 73951128 -123244304 - B4A SINE B4 -18 274 1 6 1149 275 214 41 41 chr1 73951529 73951602 -123243830 + Charlie12 DNA MER1_type 103 175 -2698 6 1149 286 264 40 27 chr1 73951544 73951618 -123243814 - RMER30 DNA MER1_type -111 91 17 6 1149 240 149 21 21 chr1 73951682 73951730 -123243702 + L2a LINE L2 3371 3418 -8 6 1149 549 0 0 0 chr1 73951995 73952056 -123243376 + (GGGA)n Simple_repeat Simple_repeat 2 62 0 6 1149 186 250 0 0 chr1 73952410 73952450 -123242982 - MIRm SINE MIR -122 154 115 6 1149 409 213 26 44 chr1 73953261 73953374 -123242058 + URR1B DNA MER1_type 110 220 -5 6 1149 1453 192 232 17 chr1 73953494 73953839 -123241593 - MTD LTR MaLR 0 419 1 6 1149 273 346 7 13 chr1 73954283 73954438 -123240994 + (TG)n Simple_repeat Simple_repeat 1 154 0 6 1149 423 280 10 0 chr1 73954616 73954716 -123240716 + ID_B1 SINE B4 104 204 -20 6 1149 255 61 0 0 chr1 73955025 73955058 -123240374 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1149 320 234 127 99 chr1 73956157 73956299 -123239133 + MIRc SINE MIR 24 169 -99 6 1149 318 283 65 11 chr1 73956500 73956593 -123238839 + Charlie1 DNA MER1_type 10 107 -2674 6 1149 195 114 0 0 chr1 73957514 73957549 -123237883 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1149 221 182 18 0 chr1 73958523 73958578 -123236854 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1149 24 0 0 0 chr1 73959549 73959573 -123235859 + AT_rich Low_complexity Low_complexity 1 24 0 6 1149 207 69 0 0 chr1 73961692 73961721 -123233711 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1149 323 23 23 0 chr1 73961822 73961866 -123233566 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1149 429 20 0 0 chr1 73962158 73962208 -123233224 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1149 434 49 16 0 chr1 73963340 73963401 -123232031 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1149 240 213 21 0 chr1 73963780 73963842 -123231590 + GA-rich Low_complexity Low_complexity 1 63 0 6 1149 214 188 21 0 chr1 73963920 73963968 -123231464 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 6 1149 335 260 8 0 chr1 73964013 73964136 -123231296 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 6 1149 181 311 38 98 chr1 73964506 73964638 -123230794 + MIRm SINE MIR 20 143 -133 6 1149 258 250 139 0 chr1 73965183 73965255 -123230177 + PB1D10 SINE Alu 12 93 -24 6 1149 232 324 40 40 chr1 73965505 73965653 -123229779 - B1_Mur3 SINE Alu -1 148 1 6 1149 233 305 114 0 chr1 73966689 73966794 -123228638 + MIRb SINE MIR 132 248 -20 6 1149 306 0 0 0 chr1 73968050 73968084 -123227348 + (TAA)n Simple_repeat Simple_repeat 3 36 0 6 1149 538 311 45 50 chr1 73968456 73968829 -123226603 + MLT1C LTR MaLR 9 355 -35 6 1149 219 326 11 22 chr1 73969380 73969471 -123225961 - B4A SINE B4 -147 145 56 6 1149 372 43 0 0 chr1 73970511 73970557 -123224875 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1149 445 272 205 66 chr1 73970576 73970820 -123224612 - B4 SINE B4 -14 278 1 6 1149 256 284 163 16 chr1 73970908 73971037 -123224395 + MIRb SINE MIR 103 250 -18 6 1149 328 298 73 0 chr1 73972506 73972630 -123222802 - MIRb SINE MIR -126 142 10 6 1149 252 0 0 0 chr1 73972886 73972914 -123222518 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1149 432 0 0 0 chr1 73974018 73974066 -123221366 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1149 231 36 0 0 chr1 73974180 73974208 -123221224 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1149 209 344 0 0 chr1 73974268 73974332 -123221100 + MIRb SINE MIR 115 178 -90 6 1149 403 350 26 37 chr1 73975995 73976185 -123219247 - MER58A DNA MER1_type -28 196 9 6 1149 217 326 74 0 chr1 73976191 73976286 -123219146 - MIR SINE MIR -89 119 18 6 1149 273 186 56 28 chr1 73977786 73977858 -123217574 + ID4 SINE ID 6 79 -4 6 1149 255 61 0 0 chr1 73977858 73977891 -123217541 + (CATA)n Simple_repeat Simple_repeat 4 36 0 6 1149 939 280 54 29 chr1 73978616 73978895 -123216537 + B4A SINE B4 1 286 -6 6 1149 198 317 51 66 chr1 73979506 73979672 -123215760 + MIRc SINE MIR 19 179 -29 6 1149 1081 191 58 5 chr1 73980077 73980282 -123215150 + B3 SINE B2 1 216 0 6 1149 1222 61 0 0 chr1 73980443 73980590 -123214842 + B1_Mus2 SINE Alu 1 147 0 6 1149 1232 135 84 28 chr1 73980631 73980845 -123214587 + URR1A DNA MER1_type 1 226 0 6 1149 188 358 37 0 chr1 73980892 73980973 -123214459 - MIR3 SINE MIR -14 194 111 6 1149 529 216 75 131 chr1 73981153 73981313 -123214119 + RSINE1 SINE B4 2 152 -13 6 1149 555 320 68 71 chr1 73981596 73981949 -123213483 + ORR1E LTR MaLR 7 358 -1 6 1149 251 289 10 30 chr1 73982512 73982612 -123212820 + GA-rich Low_complexity Low_complexity 1 98 0 6 1149 297 0 0 0 chr1 73984240 73984273 -123211159 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1149 213 222 0 0 chr1 73984894 73984957 -123210475 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1149 229 310 70 19 chr1 73985773 73985931 -123209501 + MER33 DNA MER1_type 38 203 -121 6 1149 212 0 0 35 chr1 73985934 73985963 -123209469 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1149 242 301 81 14 chr1 73985974 73986048 -123209384 - PB1D7 SINE Alu -41 79 1 6 1149 607 284 162 18 chr1 73986206 73986435 -123208997 - B4A SINE B4 -20 272 11 6 1149 273 75 0 0 chr1 73986588 73986628 -123208804 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1149 192 179 0 0 chr1 73989726 73989765 -123205667 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1149 324 0 0 0 chr1 73991021 73991057 -123204375 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1149 206 239 0 11 chr1 73991321 73991414 -123204018 + GA-rich Low_complexity Low_complexity 2 93 0 6 1149 430 196 30 20 chr1 73991533 73991632 -123203800 + HAL1-3A_ME LINE L1 1935 2034 -824 6 1149 335 108 31 0 chr1 73991636 73991701 -123203731 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 6 1149 192 97 0 0 chr1 73993701 73993732 -123201700 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1149 250 342 194 38 chr1 73994370 73994787 -123200645 + L2 LINE L2 2466 2947 -472 6 1149 219 363 48 0 chr1 73995372 73995518 -123199914 + L2 LINE L2 1854 2006 -1413 6 1149 1297 139 49 36 chr1 73995908 73996131 -123199301 - URR1A DNA MER1_type 0 226 1 6 1149 291 176 0 0 chr1 73996613 73996664 -123198768 - BC1_Mm scRNA scRNA -63 89 39 6 1149 431 264 110 38 chr1 74000855 74001085 -123194347 + B4A SINE B4 1 272 -20 1 1149 435 83 0 0 chr1 74001089 74001149 -123194283 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1149 192 97 0 0 chr1 74001898 74001929 -123193503 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 3 1149 423 183 0 0 chr1 74002795 74002877 -123192555 + GA-rich Low_complexity Low_complexity 2 83 0 4 1149 22 0 0 0 chr1 74002912 74002934 -123192498 + AT_rich Low_complexity Low_complexity 1 22 0 5 1149 357 254 38 30 chr1 74005793 74005913 -123189519 + B1F1 SINE Alu 7 126 -21 6 1149 396 0 0 0 chr1 74009654 74009698 -123185734 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1149 231 36 0 0 chr1 74009698 74009725 -123185707 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 8 1149 209 230 0 75 chr1 74009888 74009968 -123185464 + (CAGCC)n Simple_repeat Simple_repeat 5 78 0 9 1149 251 200 20 0 chr1 74011191 74011241 -123184191 - BC1_Mm scRNA scRNA -67 85 35 1 1149 254 301 81 25 chr1 74011633 74011793 -123183639 + YREP_Mm Unknown Unknown 140 308 -1504 1 1149 620 216 56 0 chr1 74011670 74011795 -123183637 - ID_B1 SINE B4 -6 218 87 1 1149 279 173 0 0 chr1 74011808 74011860 -123183572 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1149 302 272 24 24 chr1 74012034 74012117 -123183315 + PB1D10 SINE Alu 35 117 0 1 1149 1250 238 31 24 chr1 74013555 74013843 -123181589 - B4 SINE B4 -2 290 1 1 1149 219 296 0 0 chr1 74014333 74014387 -123181045 + GA-rich Low_complexity Low_complexity 4 57 0 1 1149 609 14 0 0 chr1 74014420 74014490 -123180942 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1149 658 255 14 0 chr1 74016294 74016439 -123178993 + B1_Mus1 SINE Alu 1 147 -1 1 1149 714 125 0 0 chr1 74016439 74016551 -123178881 + (GGAA)n Simple_repeat Simple_repeat 2 113 0 1 1149 195 314 94 31 chr1 74017367 74017495 -123177937 + MIRb SINE MIR 63 198 -70 2 1149 263 321 22 115 chr1 74017697 74017880 -123177552 + L1MC LINE L1 5716 5881 -2001 2 1149 329 324 93 72 chr1 74017887 74018284 -123177148 + L2b LINE L2 2876 3256 -119 2 1149 944 255 68 29 chr1 74018284 74018563 -123176869 - B4 SINE B4 0 292 3 2 1149 224 370 61 105 chr1 74018563 74018684 -123176748 + L2b LINE L2 3257 3371 -4 2 1149 397 330 32 32 chr1 74018993 74019181 -123176251 - MIRm SINE MIR -83 193 6 2 1149 464 302 5 32 chr1 74020233 74020418 -123175014 + GA-rich Low_complexity Low_complexity 1 180 0 2 1149 342 288 77 56 chr1 74021403 74021727 -123173705 + MTEb LTR MaLR 1 346 -33 2 1149 396 0 0 0 chr1 74021734 74021778 -123173654 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1149 255 309 0 23 chr1 74021831 74021917 -123173515 + B1F SINE Alu 66 149 0 2 1149 227 263 18 0 chr1 74022890 74022947 -123172485 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1149 242 204 0 0 chr1 74023278 74023327 -123172105 + (CACCAT)n Simple_repeat Simple_repeat 6 54 0 3 1149 198 271 136 0 chr1 74023334 74023393 -123172039 - MIR3 SINE MIR -21 187 121 3 1149 285 29 0 0 chr1 74023929 74023963 -123171469 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1149 1258 48 0 0 chr1 74023963 74024110 -123171322 - B1_Mus2 SINE Alu 0 147 1 3 1149 251 279 33 0 chr1 74024119 74024180 -123171252 + MLT1I LTR MaLR 106 168 -243 3 1149 259 180 49 0 chr1 74024314 74024375 -123171057 + MLT1I LTR MaLR 348 411 0 3 1149 229 356 43 0 chr1 74025555 74025670 -123169762 + MLT1B LTR MaLR 96 215 -175 3 1149 1253 67 5 14 chr1 74027805 74028024 -123167408 + (CA)n Simple_repeat Simple_repeat 1 216 0 3 1149 525 248 0 26 chr1 74029012 74029128 -123166304 - ID_B1 SINE B4 -8 216 104 3 1149 2659 141 2 41 chr1 74029157 74029539 -123165893 + MTC LTR MaLR 1 376 -45 3 1149 2171 118 25 0 chr1 74029539 74029860 -123165572 + ORR1A4 LTR MaLR 1 329 0 3 1149 2659 141 2 41 chr1 74029860 74029915 -123165517 + MTC LTR MaLR 377 421 0 3 1149 438 108 36 0 chr1 74030564 74030647 -123164785 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 4 1149 588 149 17 0 chr1 74030789 74030963 -123164469 + (TCTG)n Simple_repeat Simple_repeat 4 180 0 4 1149 290 146 0 0 chr1 74030963 74031011 -123164421 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1149 213 289 13 26 chr1 74032556 74032634 -123162798 + GA-rich Low_complexity Low_complexity 1 77 0 4 1149 673 208 6 6 chr1 74033020 74033199 -123162233 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 4 1149 948 18 0 0 chr1 74033569 74033679 -123161753 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1149 216 0 0 0 chr1 74033679 74033702 -123161730 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1149 255 279 49 25 chr1 74033867 74033878 -123161554 - ID4_ SINE ID 0 83 73 4 1149 441 0 0 0 chr1 74033878 74033927 -123161505 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1149 255 279 49 25 chr1 74033927 74033996 -123161436 - ID4_ SINE ID -11 72 1 4 1149 189 74 0 0 chr1 74034485 74034512 -123160920 + (C)n Simple_repeat Simple_repeat 1 27 0 4 1149 261 205 16 33 chr1 74036102 74036223 -123159209 + CT-rich Low_complexity Low_complexity 2 120 0 5 1149 216 320 95 19 chr1 74037417 74037522 -123157910 + L2 LINE L2 2848 2960 -459 5 1149 218 346 29 10 chr1 74039337 74039439 -123155993 - MIRm SINE MIR -122 154 51 5 1149 202 288 207 25 chr1 74040451 74040572 -123154860 - MIRc SINE MIR -117 151 9 5 1149 244 309 162 9 chr1 74040828 74040939 -123154493 + MLT1B LTR MaLR 253 380 -10 5 1149 1023 68 16 28 chr1 74041217 74041399 -123154033 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1149 243 0 0 0 chr1 74044611 74044638 -123150794 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1149 288 311 109 22 chr1 74046462 74046600 -123148832 - L3b LINE CR1 -125 357 208 5 1149 180 152 0 0 chr1 74046969 74047002 -123148430 + C-rich Low_complexity Low_complexity 4 36 0 5 1149 219 0 118 0 chr1 74047343 74047394 -123148038 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 5 1149 234 0 0 0 chr1 74048516 74048542 -123146890 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1149 420 105 0 0 chr1 74049394 74049470 -123145962 + (TCTG)n Simple_repeat Simple_repeat 4 79 0 6 1149 735 275 42 24 chr1 74049563 74049775 -123145657 - B4 SINE B4 -75 217 2 6 1149 393 257 19 19 chr1 74049787 74049890 -123145542 - PB1D7 SINE Alu -5 115 13 6 1149 447 141 0 0 chr1 74050567 74050645 -123144787 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1149 648 260 52 42 chr1 74050820 74051033 -123144399 - B3 SINE B2 0 216 2 6 1149 420 143 0 0 chr1 74052266 74052336 -123143096 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1149 816 235 70 6 chr1 74052413 74052584 -123142848 - B3A SINE B2 -16 182 1 6 1149 197 333 0 0 chr1 74052695 74052752 -123142680 + L2a LINE L2 3370 3426 0 6 1149 246 233 0 0 chr1 74053622 74053682 -123141750 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1149 1070 246 54 0 chr1 74053702 74053962 -123141470 - B4A SINE B4 -18 274 1 7 1150 414 0 0 0 chr1 74057008 74057054 -123138378 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 7 1150 722 213 0 35 chr1 74057064 74057205 -123138227 - ID_B1 SINE B4 -13 211 76 7 1150 872 185 20 50 chr1 74057310 74057349 -123138083 + B3A SINE B2 4 42 -156 7 1150 1884 129 35 154 chr1 74057349 74057700 -123137732 + ORR1D1 LTR MaLR 3 304 -70 7 1150 1294 102 43 0 chr1 74057700 74057886 -123137546 - B2_Mm2 SINE B2 0 195 2 7 1150 1884 129 35 154 chr1 74057886 74057956 -123137476 + ORR1D1 LTR MaLR 305 374 0 7 1150 872 189 18 75 chr1 74057956 74058146 -123137286 + B3A SINE B2 43 196 -2 7 1150 940 149 7 0 chr1 74058204 74058345 -123137087 + B1_Mus1 SINE Alu 2 143 -5 7 1150 224 185 19 0 chr1 74058350 74058404 -123137028 + GA-rich Low_complexity Low_complexity 2 56 0 7 1150 1049 308 73 20 chr1 74059135 74059530 -123135902 - Tigger7 DNA MER2_type -2070 421 6 7 1150 300 70 0 0 chr1 74061521 74061564 -123133868 + (G)n Simple_repeat Simple_repeat 1 43 0 7 1150 294 50 0 0 chr1 74062001 74062041 -123133391 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1150 447 19 0 0 chr1 74062041 74062092 -123133340 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1150 373 272 148 39 chr1 74063562 74063765 -123131667 - MIR SINE MIR -2 260 36 8 1150 239 340 28 28 chr1 74065386 74065492 -123129940 - PB1D10 SINE Alu -11 106 1 8 1150 507 17 0 0 chr1 74065539 74065599 -123129833 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1150 439 290 145 0 chr1 74065610 74065734 -123129698 - RSINE1 SINE B4 -21 144 3 8 1150 1277 35 148 0 chr1 74065784 74065953 -123129479 + B2_Mm2 SINE B2 2 195 0 8 1150 306 276 26 0 chr1 74065964 74066040 -123129392 + ID4 SINE ID 1 78 -5 8 1150 288 186 0 0 chr1 74066040 74066099 -123129333 + (TGG)n Simple_repeat Simple_repeat 1 59 0 8 1150 21 36 0 0 chr1 74066102 74066130 -123129302 + AT_rich Low_complexity Low_complexity 1 28 0 8 1150 1356 82 27 16 chr1 74066161 74066348 -123129084 - B2_Mm2 SINE B2 -6 189 1 9 1150 307 253 151 6 chr1 74066349 74066508 -123128924 - L1MB4 LINE L1 -42 6138 5957 9 1150 453 321 104 45 chr1 74066957 74067244 -123128188 + MER21B LTR ERV1 521 824 -39 9 1150 520 316 99 34 chr1 74067338 74067630 -123127802 + MLT1B LTR MaLR 1 311 -79 9 1150 181 325 81 11 chr1 74067857 74067944 -123127488 - MIRb SINE MIR -16 252 160 9 1150 262 244 115 0 chr1 74067925 74068003 -123127429 - MIRc SINE MIR -120 148 62 9 1150 550 199 71 29 chr1 74070081 74070221 -123125211 - URR1A DNA MER1_type 0 226 81 9 1150 210 266 16 16 chr1 74070984 74071079 -123124353 - MIR SINE MIR -125 151 57 9 1150 214 324 0 13 chr1 74071437 74071512 -123123920 + PB1D10 SINE Alu 1 74 -43 9 1150 187 341 52 29 chr1 74071933 74072069 -123123363 - L2c LINE L2 -48 3339 3201 9 1150 285 330 0 46 chr1 74072571 74072679 -123122753 - PB1D10 SINE Alu -14 103 1 9 1150 555 289 18 25 chr1 74072679 74072761 -123122671 - ID SINE ID -143 81 1 1 1150 1123 244 5 0 chr1 74073668 74073881 -123121551 + B3 SINE B2 3 216 0 1 1150 180 219 0 0 chr1 74074877 74074918 -123120514 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1150 216 0 0 0 chr1 74075101 74075125 -123120307 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1150 286 288 9 46 chr1 74076261 74076370 -123119062 - MIR SINE MIR -154 108 4 1 1150 218 292 134 47 chr1 74077091 74077248 -123118184 - MIRb SINE MIR -25 237 66 1 1150 207 273 0 0 chr1 74077318 74077373 -123118059 + L2c LINE L2 3098 3152 -235 1 1150 330 67 0 0 chr1 74079215 74079260 -123116172 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1150 790 264 46 0 chr1 74079260 74079457 -123115975 - ID_B1 SINE B4 -10 214 9 1 1150 359 318 106 17 chr1 74079463 74079642 -123115790 - MIR SINE MIR -47 215 21 1 1150 353 117 17 0 chr1 74080444 74080504 -123114928 + (TTG)n Simple_repeat Simple_repeat 1 61 0 1 1150 227 319 144 19 chr1 74081650 74081810 -123113622 - L3 LINE CR1 -3 4486 4307 1 1150 273 163 0 0 chr1 74084008 74084057 -123111375 + (TGG)n Simple_repeat Simple_repeat 2 50 0 1 1150 1433 50 11 32 chr1 74084248 74084436 -123110996 + B2_Mm2 SINE B2 3 186 -9 1 1150 907 222 46 0 chr1 74084635 74084829 -123110603 - ID_B1 SINE B4 -13 211 9 1 1150 476 311 62 16 chr1 74084832 74085025 -123110407 - MER2 DNA MER2_type -142 203 2 1 1150 364 172 207 0 chr1 74085199 74085286 -123110146 - B1F2 SINE Alu -1 148 44 1 1150 797 293 16 154 chr1 74085328 74085764 -123109668 + MTE2a LTR MaLR 4 379 0 1 1150 673 277 14 65 chr1 74087071 74087302 -123108130 - ID_B1 SINE B4 -68 224 14 1 1150 198 103 0 0 chr1 74088370 74088399 -123107033 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 1 1150 422 232 134 0 chr1 74090397 74090509 -123104923 + L3 LINE CR1 3465 3591 -898 1 1150 251 395 25 34 chr1 74090695 74090813 -123104619 + L3 LINE CR1 3855 3971 -518 1 1150 376 123 27 0 chr1 74091426 74091499 -123103933 + CT-rich Low_complexity Low_complexity 1 75 0 1 1150 206 344 31 10 chr1 74091844 74091941 -123103491 + MIRc SINE MIR 24 122 -146 1 1150 718 166 28 0 chr1 74092012 74092302 -123103130 + (TCTA)n Simple_repeat Simple_repeat 1 298 0 1 1150 332 222 24 36 chr1 74092407 74092491 -123102941 + PB1D10 SINE Alu 17 99 -18 1 1150 384 22 0 0 chr1 74092872 74092917 -123102515 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1 1150 258 246 0 49 chr1 74095090 74095274 -123100158 + (ATGGTG)n Simple_repeat Simple_repeat 3 177 0 1 1150 341 286 0 10 chr1 74095277 74095376 -123100056 + (TGG)n Simple_repeat Simple_repeat 1 98 0 1 1150 241 336 28 0 chr1 74095423 74095530 -123099902 - MIR SINE MIR -100 162 53 1 1150 414 0 0 0 chr1 74095574 74095620 -123099812 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1150 254 238 0 73 chr1 74095627 74095695 -123099737 - ID_B1 SINE B4 -23 201 139 1 1150 504 0 0 0 chr1 74095734 74095790 -123099642 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1150 243 0 0 0 chr1 74095790 74095816 -123099616 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1150 206 313 8 25 chr1 74095824 74095942 -123099490 + (CATA)n Simple_repeat Simple_repeat 1 116 0 1 1150 225 256 23 0 chr1 74095995 74096081 -123099351 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1150 1004 102 168 6 chr1 74097232 74097399 -123098033 + B2_Mm2 SINE B2 1 194 -1 1 1150 324 0 0 0 chr1 74097531 74097567 -123097865 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1150 477 62 0 0 chr1 74097567 74097632 -123097800 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1150 415 264 42 36 chr1 74098544 74098709 -123096723 + L1MC5 LINE L1 7610 7775 -186 1 1150 552 216 335 0 chr1 74098888 74099055 -123096377 + ID_B1 SINE B4 1 223 -1 1 1150 507 33 0 0 chr1 74099067 74099128 -123096304 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1150 321 26 0 0 chr1 74099128 74099165 -123096267 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1150 450 0 0 0 chr1 74100964 74101014 -123094418 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1150 405 315 58 106 chr1 74101665 74102042 -123093390 + ORR1E LTR MaLR 1 359 0 1 1150 616 341 52 45 chr1 74102798 74103144 -123092288 + MLT2C1 LTR ERVL 5 373 -41 1 1150 374 367 52 50 chr1 74103366 74103750 -123091682 + L1MC4a LINE L1 7498 7882 0 1 1150 411 235 88 0 chr1 74103844 74103946 -123091486 + B4 SINE B4 182 292 0 1 1150 238 258 16 16 chr1 74104592 74104655 -123090777 - MIR SINE MIR -42 220 158 1 1150 320 292 82 62 chr1 74105671 74105695 -123089737 - ID_B1 SINE B4 0 224 114 1 1150 406 224 43 78 chr1 74105695 74105811 -123089621 - B1F SINE Alu -37 112 1 1 1150 456 19 0 0 chr1 74106550 74106603 -123088829 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1150 674 110 0 18 chr1 74107249 74107360 -123088072 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 1 1150 555 255 99 27 chr1 74107360 74107694 -123087738 + L1M4 LINE L1 3254 3611 -2535 1 1150 259 317 8 46 chr1 74107694 74107821 -123087611 + B1F1 SINE Alu 1 120 -29 1 1150 841 271 40 11 chr1 74107855 74108131 -123087301 + L1MC LINE L1 3604 3887 -2259 1 1150 833 316 16 8 chr1 74108133 74108379 -123087053 - B4A SINE B4 -44 248 1 1 1150 1376 47 47 0 chr1 74108723 74108895 -123086537 + B2_Mm2 SINE B2 2 181 -14 1 1150 1300 34 0 0 chr1 74108905 74109053 -123086379 - B1_Mus1 SINE Alu 0 148 1 1 1150 974 248 19 0 chr1 74109089 74109295 -123086137 - ID_B1 SINE B4 -12 212 3 1 1150 263 333 88 0 chr1 74109342 74109489 -123085943 - L1M5 LINE L1 -382 5782 5623 1 1150 489 277 66 35 chr1 74109865 74110093 -123085339 - MIR SINE MIR -13 249 15 1 1150 2369 74 51 0 chr1 74110322 74110633 -123084799 - ORR1A2 LTR MaLR 0 327 1 1 1150 966 136 13 187 chr1 74110991 74111226 -123084206 + B2_Mm2 SINE B2 2 195 0 1 1150 891 199 99 5 chr1 74111304 74111496 -123083936 + B3 SINE B2 2 211 -5 1 1150 401 256 82 8 chr1 74112041 74112163 -123083269 + B1F1 SINE Alu 14 144 -5 1 1150 365 206 0 0 chr1 74112175 74112238 -123083194 + ID4_ SINE ID 5 67 -16 1 1150 253 302 17 86 chr1 74112385 74112501 -123082931 + MLT1F1 LTR MaLR 440 547 -22 1 1150 289 303 132 6 chr1 74112675 74112841 -123082591 + L2b LINE L2 2488 2674 -745 1 1150 188 227 23 0 chr1 74113008 74113052 -123082380 + L2b LINE L2 3015 3059 -316 1 1150 432 0 0 0 chr1 74115705 74115753 -123079679 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1150 3654 154 67 2 chr1 74116615 74117253 -123078179 + RMER1A Other Other 350 1029 -1 1 1150 266 307 35 30 chr1 74117449 74117593 -123077839 + L2c LINE L2 2969 3113 -274 1 1150 185 254 16 33 chr1 74117842 74117903 -123077529 + L3 LINE CR1 4345 4404 -85 1 1150 497 16 16 0 chr1 74118383 74118445 -123076987 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1150 234 0 0 0 chr1 74118445 74118470 -123076962 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1150 1129 188 5 23 chr1 74118505 74118723 -123076709 - B3 SINE B2 0 216 3 1 1150 615 51 0 0 chr1 74118749 74118828 -123076604 + (CCA)n Simple_repeat Simple_repeat 2 80 0 1 1150 275 267 0 85 chr1 74118931 74119013 -123076419 + MTEb LTR MaLR 1 75 -304 1 1150 333 0 0 0 chr1 74119629 74119666 -123075766 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1150 351 309 171 9 chr1 74119842 74120058 -123075374 - MER44A DNA MER2_type -84 255 5 1 1150 221 276 54 24 chr1 74120102 74120209 -123075223 + MIR SINE MIR 34 141 -135 1 1150 598 130 152 25 chr1 74120273 74120391 -123075041 - B1_Mus2 SINE Alu 0 147 15 1 1150 200 34 0 33 chr1 74120487 74120517 -123074915 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 1 1150 321 340 61 37 chr1 74120701 74120915 -123074517 + MLT1A1 LTR MaLR 176 394 -14 1 1150 938 274 61 55 chr1 74121633 74121733 -123073699 + MLT2D LTR ERVL 33 121 -293 1 1150 2454 111 63 21 chr1 74121733 74122111 -123073321 + ORR1B1 LTR MaLR 1 394 0 1 1150 938 274 61 55 chr1 74122111 74122338 -123073094 + MLT2D LTR ERVL 122 362 -52 1 1150 273 217 17 0 chr1 74122344 74122404 -123073028 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 1 1150 504 146 0 0 chr1 74122426 74122529 -123072903 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 1 1150 868 65 8 8 chr1 74123451 74123576 -123071856 + (TGGA)n Simple_repeat Simple_repeat 4 128 0 1 1150 576 0 0 0 chr1 74123668 74123732 -123071700 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 1 1150 318 115 0 0 chr1 74124224 74124285 -123071147 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 1 1150 727 170 78 49 chr1 74125266 74125408 -123070024 - B1_Mur4 SINE Alu -2 148 3 1 1150 261 0 0 0 chr1 74125717 74125746 -123069686 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1 1150 1109 65 0 42 chr1 74126858 74127002 -123068430 - B1_Mus2 SINE Alu -9 138 1 1 1150 1558 58 0 5 chr1 74127030 74127220 -123068212 + B2_Mm2 SINE B2 2 190 -5 1 1150 589 135 18 9 chr1 74127223 74127335 -123068097 + GA-rich Low_complexity Low_complexity 4 116 0 1 1150 278 237 195 0 chr1 74127438 74127556 -123067876 - B1F SINE Alu 0 149 9 1 1150 360 0 0 0 chr1 74127665 74127705 -123067727 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1150 387 0 0 0 chr1 74127705 74127747 -123067685 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1150 1369 154 18 5 chr1 74127833 74128055 -123067377 + URR1B DNA MER1_type 1 225 0 1 1150 230 222 59 47 chr1 74128870 74128955 -123066477 + RLTR25B LTR ERVK 464 549 -479 1 1150 744 292 51 17 chr1 74128955 74129248 -123066184 + L1MC4 LINE L1 7365 7667 -375 1 1150 224 389 36 18 chr1 74131516 74131661 -123063771 + L2 LINE L2 2510 2654 -765 2 1150 294 29 0 0 chr1 74131661 74131696 -123063736 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1150 224 389 36 18 chr1 74131696 74131770 -123063662 + L2 LINE L2 2655 2733 -686 2 1150 641 136 469 0 chr1 74132032 74132179 -123063253 + B3 SINE B2 1 216 0 2 1150 251 289 0 50 chr1 74132209 74132289 -123063143 - ID4_ SINE ID -7 76 1 2 1150 332 304 70 45 chr1 74132464 74132664 -123062768 + MER54A LTR ERVL 226 430 -471 2 1150 298 333 0 10 chr1 74132671 74132771 -123062661 + C-rich Low_complexity Low_complexity 4 102 0 2 1150 383 235 266 57 chr1 74133220 74133378 -123062054 + B3A SINE B2 1 191 -7 2 1150 506 287 81 0 chr1 74133414 74133550 -123061882 + B1F2 SINE Alu 1 147 -2 2 1150 711 270 18 50 chr1 74133555 74133777 -123061655 + ID_B1 SINE B4 2 216 -8 2 1150 444 37 0 0 chr1 74133777 74133831 -123061601 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2 1150 751 256 146 24 chr1 74134231 74134519 -123060913 - MTD LTR MaLR -105 302 1 2 1150 190 253 107 12 chr1 74134718 74134802 -123060630 - MIRb SINE MIR -2 266 175 2 1150 251 275 33 11 chr1 74134888 74134980 -123060452 - MIR SINE MIR -124 138 45 2 1150 325 353 50 0 chr1 74136010 74136129 -123059303 - MIRb SINE MIR -122 146 22 2 1150 181 326 160 20 chr1 74136518 74136668 -123058764 - MIRb SINE MIR -28 240 70 2 1150 220 301 0 14 chr1 74137911 74137985 -123057447 + C-rich Low_complexity Low_complexity 2 74 0 2 1150 354 169 0 0 chr1 74138618 74138683 -123056749 + CT-rich Low_complexity Low_complexity 2 66 0 2 1150 246 250 0 16 chr1 74140355 74140399 -123055033 + RSINE1 SINE B4 102 145 -20 2 1150 234 0 0 0 chr1 74140399 74140425 -123055007 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1150 246 250 0 16 chr1 74140425 74140441 -123054991 + RSINE1 SINE B4 146 161 -4 2 1150 582 15 0 0 chr1 74140442 74140509 -123054923 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2 1150 711 199 23 8 chr1 74140521 74140653 -123054779 - B1_Mur1 SINE Alu -8 141 8 2 1150 490 284 20 47 chr1 74140653 74140669 -123054763 - ID_B1 SINE B4 -8 216 73 2 1150 785 169 6 57 chr1 74140697 74140854 -123054578 + B1_Mur3 SINE Alu 1 149 0 2 1150 248 0 31 0 chr1 74141851 74141883 -123053549 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1150 376 185 151 6 chr1 74142323 74142434 -123052998 - MIR SINE MIR -121 155 35 2 1150 279 325 30 61 chr1 74143795 74143959 -123051473 - MIR SINE MIR -90 172 14 2 1150 22 0 0 0 chr1 74144486 74144508 -123050924 + AT_rich Low_complexity Low_complexity 1 22 0 2 1150 807 188 0 0 chr1 74147264 74147408 -123048024 - B1_Mur1 SINE Alu 0 149 6 2 1150 1414 80 32 0 chr1 74147868 74148055 -123047377 - B2_Mm1a SINE B2 0 193 1 2 1150 490 288 21 14 chr1 74148123 74148264 -123047168 - RSINE1 SINE B4 0 165 24 2 1150 374 228 0 25 chr1 74148525 74148606 -123046826 + MTEb LTR MaLR 271 349 -30 2 1150 279 0 0 0 chr1 74148657 74148688 -123046744 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1150 231 298 96 9 chr1 74149944 74150059 -123045373 - MIRc SINE MIR -135 133 9 2 1150 277 324 38 84 chr1 74150136 74150375 -123045057 - L3b LINE CR1 -188 294 67 2 1150 202 259 32 75 chr1 74151926 74152033 -123043399 + MIR SINE MIR 74 184 -92 2 1150 188 396 30 25 chr1 74152021 74152218 -123043214 + MIRb SINE MIR 25 222 -46 2 1150 29 70 0 0 chr1 74153817 74153874 -123041558 + AT_rich Low_complexity Low_complexity 1 57 0 2 1150 332 322 168 0 chr1 74154030 74154179 -123041253 + HAL1 LINE L1 852 1025 -1482 2 1150 1332 98 0 45 chr1 74155183 74155385 -123040047 + B2_Mm2 SINE B2 1 193 -2 2 1150 335 273 109 0 chr1 74156452 74156562 -123038870 - RSINE1 SINE B4 -40 125 4 2 1150 414 0 0 0 chr1 74156597 74156643 -123038789 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1150 808 135 8 8 chr1 74156647 74156774 -123038658 - B1_Mur3 SINE Alu -13 136 10 2 1150 657 0 0 0 chr1 74157123 74157196 -123038236 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 1150 194 378 18 18 chr1 74157781 74157894 -123037538 - MIRb SINE MIR -81 187 75 2 1150 324 0 0 0 chr1 74158754 74158790 -123036642 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1150 754 85 16 0 chr1 74158790 74158918 -123036514 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1150 21 0 0 0 chr1 74159448 74159469 -123035963 + AT_rich Low_complexity Low_complexity 1 21 0 2 1150 235 345 61 43 chr1 74160704 74160740 -123034692 + L1_Rod LINE L1 4957 4988 -895 2 1150 824 189 78 28 chr1 74160740 74160920 -123034512 + B2_Mm2 SINE B2 2 190 -5 2 1150 450 289 70 44 chr1 74160920 74161162 -123034270 + L1_Rod LINE L1 4970 5240 -643 2 1150 251 306 12 0 chr1 74161300 74161385 -123034047 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1150 304 253 0 39 chr1 74161412 74161490 -123033942 + B4A SINE B4 218 292 0 2 1150 407 232 92 14 chr1 74161534 74161679 -123033753 + L1_Mur2 LINE L1 5291 5439 -861 2 1150 850 188 7 0 chr1 74161679 74161823 -123033609 + B1_Mus1 SINE Alu 1 145 -3 2 1150 856 201 82 39 chr1 74161832 74162039 -123033393 + B3 SINE B2 1 216 0 2 1150 339 259 104 93 chr1 74162039 74162261 -123033171 + L1_Mur2 LINE L1 5440 5642 -658 2 1150 717 279 0 0 chr1 74162309 74162467 -123032965 + B3 SINE B2 52 209 -7 2 1150 270 163 0 0 chr1 74162467 74162510 -123032922 + L1_Mur2 LINE L1 5740 5782 -386 2 1150 592 259 151 16 chr1 74162514 74162706 -123032726 + ID_B1 SINE B4 3 220 -4 2 1150 818 208 0 13 chr1 74162729 74162885 -123032547 + B3 SINE B2 58 211 -5 2 1150 276 314 86 29 chr1 74162924 74163029 -123032403 + RSINE1 SINE B4 3 113 -52 2 1150 531 0 0 0 chr1 74163033 74163092 -123032340 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1150 180 0 0 0 chr1 74163092 74163112 -123032320 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1150 798 295 80 25 chr1 74163190 74163465 -123031967 - B4A SINE B4 -2 290 1 2 1150 949 268 9 0 chr1 74163465 74163682 -123031750 - B4A SINE B4 -64 228 10 2 1150 1132 44 7 0 chr1 74163699 74163836 -123031596 + B1_Mus2 SINE Alu 1 138 -9 2 1150 219 36 0 0 chr1 74163836 74163864 -123031568 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1150 875 215 0 0 chr1 74163931 74164080 -123031352 + B1_Mur1 SINE Alu 1 149 0 2 1150 1209 240 25 35 chr1 74165160 74165445 -123029987 + B4A SINE B4 1 282 -10 2 1150 558 79 0 0 chr1 74165476 74165552 -123029880 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1150 357 295 10 10 chr1 74166707 74166803 -123028629 - PB1D10 SINE Alu -5 112 17 2 1150 257 324 37 37 chr1 74167263 74167372 -123028060 + MIR SINE MIR 33 141 -67 2 1150 276 100 0 0 chr1 74167734 74167774 -123027658 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2 1150 766 264 6 6 chr1 74168030 74168194 -123027238 + RSINE1 SINE B4 2 165 0 2 1150 40 21 0 0 chr1 74168200 74168247 -123027185 + AT_rich Low_complexity Low_complexity 1 47 0 2 1150 261 293 130 10 chr1 74170597 74170697 -123024735 - PB1D10 SINE Alu 0 117 6 2 1150 24 67 0 0 chr1 74170921 74170966 -123024466 + GC_rich Low_complexity Low_complexity 1 45 0 2 1150 25 31 0 0 chr1 74171021 74171053 -123024379 + GC_rich Low_complexity Low_complexity 1 32 0 2 1150 1241 48 0 0 chr1 74172277 74172424 -123023008 - B1_Mm SINE Alu 0 147 1 2 1150 283 271 160 18 chr1 74173042 74173211 -123022221 + MIRb SINE MIR 63 255 -13 2 1150 3850 40 0 7 chr1 74173216 74173675 -123021757 + L1Md_F2 LINE L1 6127 6582 0 2 1150 611 167 208 0 chr1 74173728 74173848 -123021584 + B1_Mur4 SINE Alu 1 145 -5 2 1150 953 127 0 6 chr1 74173871 74174029 -123021403 + (GAA)n Simple_repeat Simple_repeat 3 159 0 2 1150 283 305 185 5 chr1 74174788 74174999 -123020433 + L2b LINE L2 2981 3232 -194 2 1150 675 154 0 0 chr1 74174999 74175116 -123020316 + C-rich Low_complexity Low_complexity 5 121 0 2 1150 240 373 142 0 chr1 74175117 74175329 -123020103 + L2b LINE L2 3185 3426 0 2 1150 277 155 51 17 chr1 74175332 74175391 -123020041 - MIRc SINE MIR -139 129 69 2 1150 492 159 37 9 chr1 74176460 74176568 -123018864 - Lx9 LINE L1 -3 7641 7531 2 1150 255 103 0 0 chr1 74176581 74176620 -123018812 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 2 1150 4129 174 32 23 chr1 74176620 74177442 -123017990 - Lx9 LINE L1 -181 7463 6635 2 1150 1041 304 30 12 chr1 74178463 74178796 -123016636 + MER2 DNA MER2_type 1 339 -6 2 1150 347 200 33 0 chr1 74178850 74178910 -123016522 - ID4 SINE ID -6 77 16 2 1150 481 264 79 8 chr1 74180015 74180141 -123015291 - ID_B1 SINE B4 -2 222 88 2 1150 633 217 0 0 chr1 74181087 74181193 -123014239 - PB1D7 SINE Alu -13 107 2 2 1150 337 330 16 73 chr1 74181381 74181505 -123013927 - PB1D10 SINE Alu 0 117 1 2 1150 582 264 183 12 chr1 74181528 74181697 -123013735 - ID_B1 SINE B4 -25 199 2 2 1150 318 312 225 21 chr1 74181726 74182011 -123013421 - MER2 DNA MER2_type 0 345 3 2 1150 992 95 24 0 chr1 74182681 74182849 -123012583 + (TCTA)n Simple_repeat Simple_repeat 4 175 0 2 1150 1078 77 30 11 chr1 74182862 74183126 -123012306 + (TCTA)n Simple_repeat Simple_repeat 1 269 0 2 1150 661 258 19 19 chr1 74183170 74183328 -123012104 - RSINE1 SINE B4 -6 159 2 2 1150 459 314 68 50 chr1 74183336 74183730 -123011702 - L2a LINE L2 -186 3240 2820 2 1150 300 91 0 0 chr1 74183730 74183774 -123011658 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1150 481 227 33 8 chr1 74183776 74183896 -123011536 - L1MB8 LINE L1 -63 6115 5993 2 1150 1148 158 198 181 chr1 74184146 74184191 -123011241 - MTD LTR MaLR 0 419 376 2 1150 1259 40 0 20 chr1 74184191 74184342 -123011090 + B1_Mus1 SINE Alu 1 148 0 2 1150 1148 158 198 181 chr1 74184342 74184557 -123010875 - MTD LTR MaLR -44 375 201 2 1150 600 14 0 0 chr1 74184557 74184626 -123010806 + (TTTCC)n Simple_repeat Simple_repeat 3 71 0 2 1150 869 111 26 46 chr1 74184635 74184786 -123010646 - B1_Mur3 SINE Alu 0 149 2 2 1150 1148 158 198 181 chr1 74184786 74184924 -123010508 - MTD LTR MaLR -223 196 3 2 1150 241 286 318 0 chr1 74184963 74185155 -123010277 - L2a LINE L2 -752 2667 2415 2 1150 332 347 55 40 chr1 74185551 74185790 -123009642 + MIRb SINE MIR 8 261 -7 3 1150 304 213 12 96 chr1 74186356 74186439 -123008993 + ID SINE ID 4 79 -145 3 1151 1261 54 0 0 chr1 74186866 74187014 -123008418 - B1_Mus1 SINE Alu 0 148 1 3 1151 215 288 17 0 chr1 74187041 74187100 -123008332 + GA-rich Low_complexity Low_complexity 2 61 0 3 1151 315 49 0 0 chr1 74187211 74187252 -123008180 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1151 459 125 0 0 chr1 74187252 74187324 -123008108 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1151 201 295 49 37 chr1 74187801 74187882 -123007550 - MIRm SINE MIR -125 151 70 3 1151 183 254 111 14 chr1 74188120 74188192 -123007240 - L4 LINE RTE -183 1846 1768 3 1151 204 111 0 0 chr1 74188270 74188306 -123007126 + (C)n Simple_repeat Simple_repeat 1 36 0 3 1151 333 255 45 9 chr1 74188449 74188560 -123006872 + RSINE1 SINE B4 22 136 -29 3 1151 399 260 0 48 chr1 74188568 74188673 -123006759 + PB1D10 SINE Alu 18 117 0 3 1151 1314 67 0 0 chr1 74188768 74188932 -123006500 + B2_Mm2 SINE B2 2 165 -30 3 1151 1128 239 36 82 chr1 74188987 74189080 -123006352 + B4A SINE B4 1 101 -191 3 1151 855 151 7 21 chr1 74189080 74189222 -123006210 + B1_Mus1 SINE Alu 1 140 -8 3 1151 1128 239 36 82 chr1 74189222 74189434 -123005998 + B4A SINE B4 102 292 0 3 1151 625 302 99 37 chr1 74189567 74190003 -123005429 + HAL1 LINE L1 1344 1806 -701 3 1151 518 235 10 0 chr1 74190057 74190159 -123005273 + PB1D10 SINE Alu 1 103 -14 3 1151 284 231 17 133 chr1 74190060 74190180 -123005252 + MT2B2 LTR ERVL 168 273 -311 3 1151 1098 187 81 0 chr1 74190262 74190460 -123004972 + B3 SINE B2 3 216 0 3 1151 363 295 19 0 chr1 74190500 74190605 -123004827 + PB1D7 SINE Alu 2 108 -12 3 1151 504 300 87 0 chr1 74190628 74190778 -123004654 + RSINE1 SINE B4 1 163 -2 3 1151 762 169 59 0 chr1 74191009 74191145 -123004287 + B1_Mur4 SINE Alu 1 144 -6 3 1151 234 0 0 0 chr1 74191149 74191175 -123004257 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1151 789 229 184 16 chr1 74191208 74191452 -123003980 + B4A SINE B4 5 289 -3 3 1151 239 237 17 0 chr1 74191459 74191518 -123003914 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1151 344 371 89 6 chr1 74191554 74191733 -123003699 + MER3 DNA MER1_type 7 200 -9 3 1151 1302 87 0 44 chr1 74192155 74192359 -123003073 - B2_Mm2 SINE B2 0 195 1 3 1151 212 259 68 80 chr1 74192375 74192463 -123002969 - RSINE1 SINE B4 -4 161 75 3 1151 312 27 0 0 chr1 74192517 74192554 -123002878 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1151 429 237 52 0 chr1 74192701 74192798 -123002634 + B4 SINE B4 113 214 -78 3 1151 791 137 70 14 chr1 74192856 74193045 -123002387 - RMER4B LTR ERVK -54 531 324 3 1151 1013 79 59 7 chr1 74193044 74193196 -123002236 - RMER4B LTR ERVK -425 160 1 3 1151 675 280 18 43 chr1 74193482 74193646 -123001786 - RSINE1 SINE B4 -1 164 5 3 1151 437 302 53 15 chr1 74193660 74193791 -123001641 - ID_B1 SINE B4 -5 219 84 3 1151 619 292 58 36 chr1 74195179 74195403 -123000029 - MER2 DNA MER2_type -103 242 14 3 1151 1787 86 8 4 chr1 74195403 74195659 -122999773 + L1_Mus3 LINE L1 6381 6637 -1 3 1151 284 326 111 74 chr1 74196824 74197013 -122998419 + LTR88c LTR Genie? 652 847 -15 3 1151 375 323 140 13 chr1 74196870 74197027 -122998405 + LTR88b LTR Gypsy? 661 837 0 3 1151 225 0 0 0 chr1 74197084 74197109 -122998323 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1151 276 158 0 0 chr1 74197605 74197662 -122997770 + GA-rich Low_complexity Low_complexity 1 57 0 3 1151 246 376 108 17 chr1 74197665 74197841 -122997591 - MIR SINE MIR -46 216 25 3 1151 1533 136 5 0 chr1 74198066 74198287 -122997145 + URR1A DNA MER1_type 5 226 0 3 1151 1526 47 16 16 chr1 74198414 74198608 -122996824 + B2_Mm2 SINE B2 2 195 0 3 1151 281 203 85 0 chr1 74198825 74198884 -122996548 + ID4_ SINE ID 11 74 -9 3 1151 553 306 7 0 chr1 74198892 74199039 -122996393 + RSINE1 SINE B4 1 148 -17 3 1151 472 306 44 58 chr1 74200834 74200958 -122994474 + MER3 DNA MER1_type 3 124 -85 3 1151 222 37 0 0 chr1 74200958 74200985 -122994447 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1151 502 304 68 0 chr1 74200986 74201134 -122994298 - RSINE1 SINE B4 -6 159 2 3 1151 472 306 44 58 chr1 74201134 74201212 -122994220 + MER3 DNA MER1_type 125 204 -5 3 1151 540 0 0 0 chr1 74201379 74201439 -122993993 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 3 1151 210 299 15 0 chr1 74201641 74201708 -122993724 + MIR SINE MIR 79 146 -116 3 1151 333 147 107 0 chr1 74203551 74203626 -122991806 - HAL1-2a_MD LINE L1 -595 2429 2347 3 1151 721 284 18 32 chr1 74203626 74203844 -122991588 - ID_B1 SINE B4 -8 216 2 3 1151 894 234 48 19 chr1 74203866 74204075 -122991357 - B3 SINE B2 -1 215 1 3 1151 215 208 0 0 chr1 74204076 74204124 -122991308 + T-rich Low_complexity Low_complexity 4 51 0 3 1151 547 181 6 25 chr1 74204198 74204357 -122991075 + (TA)n Simple_repeat Simple_repeat 2 157 0 3 1151 299 146 182 0 chr1 74204358 74204413 -122991019 - ID_B1 SINE B4 -4 220 156 3 1151 409 175 36 12 chr1 74204420 74204588 -122990844 + (TA)n Simple_repeat Simple_repeat 1 172 0 3 1151 548 317 73 70 chr1 74206252 74206456 -122988976 + L1MB3 LINE L1 5416 5598 -585 3 1151 1689 26 0 0 chr1 74206456 74206645 -122988787 + B2_Mm1a SINE B2 2 190 -3 3 1151 548 317 73 70 chr1 74206645 74206823 -122988609 + L1MB3 LINE L1 5599 5799 -384 3 1151 308 288 121 6 chr1 74206857 74207014 -122988418 + L1MB3 LINE L1 5968 6142 -41 3 1151 243 353 0 0 chr1 74207020 74207088 -122988344 + tRNA-Ala-GCY_ tRNA tRNA 3 70 -5 3 1151 225 0 0 0 chr1 74207089 74207114 -122988318 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 1151 3987 86 7 6 chr1 74207196 74207734 -122987698 + L1_Mus3 LINE L1 6096 6634 -4 3 1151 381 43 0 0 chr1 74207939 74207986 -122987446 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1151 335 287 77 49 chr1 74208434 74208577 -122986855 + YREP_Mm Unknown Unknown 161 307 -1505 3 1151 1063 233 10 0 chr1 74208462 74208664 -122986768 - ID_B1 SINE B4 -20 204 1 3 1151 920 260 25 0 chr1 74209671 74209875 -122985557 + ID_B1 SINE B4 1 209 -15 3 1151 195 42 0 0 chr1 74209878 74209902 -122985530 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1151 344 171 0 67 chr1 74209920 74209995 -122985437 + ID4 SINE ID 2 71 -12 3 1151 227 267 0 0 chr1 74209995 74210040 -122985392 + (CAA)n Simple_repeat Simple_repeat 1 45 0 3 1151 253 255 0 139 chr1 74210256 74210381 -122985051 - B1F SINE Alu 0 149 16 3 1151 411 359 137 26 chr1 74210776 74211082 -122984350 - MLT2F LTR ERVL 0 663 324 3 1151 364 344 148 35 chr1 74211099 74211328 -122984104 - MLT2F LTR ERVL -398 265 11 3 1151 533 252 8 25 chr1 74211766 74211884 -122983548 - PB1D10 SINE Alu -1 116 1 3 1151 235 232 5 5 chr1 74211984 74212064 -122983368 + L1M5 LINE L1 5699 5778 -2104 3 1151 231 329 0 48 chr1 74212125 74212157 -122983275 + PB1D7 SINE Alu 7 85 -35 3 1151 246 274 0 0 chr1 74212157 74212208 -122983224 + ID_B1 SINE B4 142 192 -32 3 1151 307 317 15 71 chr1 74212215 74212412 -122983020 + L1MB7 LINE L1 5868 6053 -131 3 1151 1383 263 39 19 chr1 74212420 74212781 -122982651 - MTE2b LTR MaLR -9 370 3 3 1151 561 198 0 0 chr1 74212804 74212895 -122982537 + RSINE1 SINE B4 38 128 -37 3 1151 261 119 0 0 chr1 74212963 74213005 -122982427 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1151 438 20 0 0 chr1 74213005 74213056 -122982376 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 3 1151 303 318 78 39 chr1 74214193 74214240 -122981192 + L1MEg LINE L1 1842 1886 -4198 3 1151 570 186 0 229 chr1 74214240 74214428 -122981004 + B1F2 SINE Alu 5 149 0 3 1151 303 318 78 39 chr1 74214428 74214534 -122980898 + L1MEg LINE L1 1887 2001 -4083 3 1151 468 252 46 23 chr1 74214543 74214673 -122980759 + ID_B1 SINE B4 91 223 -1 3 1151 297 301 14 14 chr1 74215100 74215174 -122980258 + RSINE1 SINE B4 7 80 -85 3 1151 304 286 0 23 chr1 74215175 74215261 -122980171 + CT-rich Low_complexity Low_complexity 1 84 0 3 1151 1117 161 0 11 chr1 74215394 74215576 -122979856 + B2_Mm2 SINE B2 2 181 -14 3 1151 286 240 107 0 chr1 74215584 74215659 -122979773 + RSINE1 SINE B4 83 165 0 3 1151 186 43 0 0 chr1 74215820 74215843 -122979589 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 3 1151 8012 191 49 24 chr1 74215849 74215991 -122979441 - Lx6 LINE L1 -169 7291 7156 3 1151 1166 52 0 0 chr1 74215991 74216126 -122979306 + B1_Mus2 SINE Alu 1 135 -12 3 1151 1097 92 12 0 chr1 74216126 74216289 -122979143 + (GAAAA)n Simple_repeat Simple_repeat 5 169 0 3 1151 8243 168 68 12 chr1 74216289 74219070 -122976362 - Lx6 LINE L1 -305 7155 4209 3 1151 1774 223 65 91 chr1 74219123 74219696 -122975736 + RMER4B LTR ERVK 17 574 -11 3 1151 4431 155 65 157 chr1 74219700 74220418 -122975014 - Lx6 LINE L1 -1683 4197 3420 3 1151 1751 16 0 0 chr1 74220418 74220611 -122974821 - B2_Mm1a SINE B2 0 193 1 3 1151 4431 155 65 157 chr1 74220611 74220754 -122974678 - Lx6 LINE L1 -2461 3419 3410 3 1151 1536 60 0 0 chr1 74220754 74220939 -122974493 - B2_Mm1a SINE B2 -7 186 2 3 1151 4431 155 65 157 chr1 74220939 74221467 -122973965 - Lx6 LINE L1 -2471 3409 2935 3 1151 2995 60 23 0 chr1 74221475 74221859 -122973573 + MTB LTR MaLR 1 393 -7 3 1151 237 83 0 0 chr1 74221965 74222001 -122973431 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1151 672 139 69 0 chr1 74222003 74222104 -122973328 - B1_Mur4 SINE Alu -33 117 10 3 1151 261 211 130 13 chr1 74222388 74222465 -122972967 - HAL1 LINE L1 -352 2155 2070 3 1151 261 284 99 132 chr1 74222664 74223158 -122972274 - L1M5 LINE L1 -1482 4664 4187 3 1151 1225 68 0 0 chr1 74223277 74223424 -122972008 - B1_Mm SINE Alu 0 147 1 3 1151 478 210 10 0 chr1 74223457 74223557 -122971875 - PB1D10 SINE Alu -16 101 1 3 1151 261 0 0 0 chr1 74223621 74223650 -122971782 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1151 302 271 93 9 chr1 74224021 74224129 -122971303 - HAL1 LINE L1 -813 1694 1578 3 1151 267 250 36 42 chr1 74225032 74225082 -122970350 + (TATG)n Simple_repeat Simple_repeat 2 49 0 3 1151 438 20 0 0 chr1 74225082 74225133 -122970299 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1151 267 250 36 42 chr1 74225133 74225249 -122970183 + (TATG)n Simple_repeat Simple_repeat 4 121 0 4 1151 626 249 48 60 chr1 74225535 74225749 -122969683 + ID_B1 SINE B4 67 276 -16 4 1151 1194 173 124 4 chr1 74225749 74225914 -122969518 + Lx9 LINE L1 7316 7485 -159 4 1151 360 64 0 0 chr1 74225914 74225961 -122969471 + (CATA)n Simple_repeat Simple_repeat 3 49 0 4 1151 1194 173 124 4 chr1 74225961 74226045 -122969387 + Lx9 LINE L1 7486 7593 -51 4 1151 449 226 88 0 chr1 74226045 74226147 -122969285 + B3 SINE B2 8 118 -98 4 1151 921 128 6 51 chr1 74226160 74226316 -122969116 + B1_Mur4 SINE Alu 2 150 0 4 1151 335 309 64 23 chr1 74227048 74227182 -122968250 - B1F SINE Alu -8 141 5 4 1151 290 343 59 15 chr1 74227268 74227404 -122968028 - MIRb SINE MIR -40 228 87 4 1151 408 263 163 6 chr1 74227584 74227756 -122967676 + B3 SINE B2 4 202 -14 4 1151 555 108 0 0 chr1 74227756 74227858 -122967574 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 4 1151 362 256 72 131 chr1 74227867 74228020 -122967412 + RSINE1 SINE B4 4 147 -18 4 1151 303 71 0 0 chr1 74228021 74228063 -122967369 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1151 476 212 123 13 chr1 74228437 74228607 -122966825 + B3 SINE B2 1 184 -9 4 1151 195 100 0 0 chr1 74229031 74229061 -122966371 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 4 1151 431 178 128 10 chr1 74229061 74229151 -122966281 - B1_Mus2 SINE Alu -1 146 44 4 1151 1375 80 16 16 chr1 74229151 74229341 -122966091 - B2_Mm2 SINE B2 -4 191 2 4 1151 431 178 128 10 chr1 74229341 74229352 -122966080 - B1_Mus2 SINE Alu -104 43 33 4 1151 1229 48 0 0 chr1 74229371 74229518 -122965914 - B1_Mm SINE Alu 0 147 1 4 1151 554 0 15 0 chr1 74229570 74229636 -122965796 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1151 683 253 33 54 chr1 74229673 74229857 -122965575 - B3A SINE B2 -18 180 1 4 1151 350 279 13 0 chr1 74229857 74229936 -122965496 - ID_B1 SINE B4 -43 181 102 4 1151 189 0 0 0 chr1 74229971 74229992 -122965440 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 4 1151 256 300 38 0 chr1 74230270 74230350 -122965082 - ID2 SINE ID 0 83 1 4 1151 473 129 0 0 chr1 74230379 74230449 -122964983 - B1_Mus1 SINE Alu -71 77 8 4 1151 475 214 152 0 chr1 74230506 74230618 -122964814 - ID_B1 SINE B4 -8 216 88 4 1151 323 315 33 0 chr1 74230629 74230721 -122964711 - PB1D10 SINE Alu 0 117 23 4 1151 532 286 78 0 chr1 74230828 74230982 -122964450 + ID_B1 SINE B4 54 219 -5 4 1151 812 53 26 0 chr1 74231091 74231205 -122964227 + B1_Mus1 SINE Alu 32 148 0 4 1151 216 0 0 0 chr1 74231205 74231229 -122964203 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1151 833 111 0 60 chr1 74231242 74231376 -122964056 + B1_Mur4 SINE Alu 1 126 -24 4 1151 438 330 9 0 chr1 74231421 74231533 -122963899 - ID_B1 SINE B4 -100 124 12 4 1151 1076 168 241 0 chr1 74231605 74231976 -122963456 + MT2A LTR ERVL 1 460 -73 4 1151 288 0 0 0 chr1 74231997 74232029 -122963403 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1151 3837 154 73 15 chr1 74232049 74232739 -122962693 - RLTR33 LTR ERVK -24 654 1 4 1151 1460 61 6 0 chr1 74232916 74233096 -122962336 + B2_Mm1a SINE B2 1 181 -12 4 1151 350 21 21 0 chr1 74233096 74233143 -122962289 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 4 1151 842 170 50 6 chr1 74233145 74233305 -122962127 - B2_Mm2 SINE B2 -28 167 1 4 1151 201 175 0 0 chr1 74233307 74233347 -122962085 + CT-rich Low_complexity Low_complexity 2 41 0 4 1151 762 93 0 0 chr1 74233347 74233455 -122961977 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 4 1151 720 161 113 0 chr1 74233455 74233579 -122961853 - B1_Mur4 SINE Alu -10 140 3 4 1151 249 33 0 0 chr1 74233610 74233640 -122961792 + (TCC)n Simple_repeat Simple_repeat 2 31 0 4 1151 522 46 0 0 chr1 74233650 74233715 -122961717 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 4 1151 2261 129 22 20 chr1 74233728 74234083 -122961349 - ORR1B1 LTR MaLR -8 386 31 4 1151 512 234 0 0 chr1 74234074 74234168 -122961264 - PB1D9 SINE Alu -15 105 12 4 1151 190 331 31 46 chr1 74234171 74234301 -122961131 + L2 LINE L2 2510 2637 -782 4 1151 289 273 61 102 chr1 74234510 74234657 -122960775 + RLTR14 LTR ERV1 220 360 -22 4 1151 2531 75 12 0 chr1 74235279 74235600 -122959832 + ORR1A2 LTR MaLR 3 327 0 4 1151 222 320 10 10 chr1 74235822 74235920 -122959512 + (CCCCAG)n Simple_repeat Simple_repeat 2 99 0 4 1151 1425 76 16 0 chr1 74236280 74236464 -122958968 - B2_Mm2 SINE B2 -7 188 2 4 1151 916 249 30 5 chr1 74236491 74236693 -122958739 - B3 SINE B2 -9 207 1 4 1151 407 147 9 29 chr1 74237784 74237889 -122957543 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 1151 648 182 17 17 chr1 74237938 74238117 -122957315 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1151 728 144 35 6 chr1 74238137 74238311 -122957121 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1151 655 274 59 0 chr1 74239905 74240091 -122955341 - B3A SINE B2 -1 197 1 4 1151 563 280 49 7 chr1 74240230 74240374 -122955058 + RSINE1 SINE B4 2 151 -14 4 1151 430 274 88 9 chr1 74240411 74240525 -122954907 + RSINE1 SINE B4 3 125 -40 4 1151 369 0 0 0 chr1 74240554 74240595 -122954837 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1151 335 219 14 14 chr1 74241678 74241752 -122953680 - ID4_ SINE ID -9 74 1 4 1151 288 0 0 0 chr1 74241761 74241793 -122953639 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 4 1151 306 296 61 0 chr1 74241793 74241891 -122953541 - PB1D10 SINE Alu -13 104 1 4 1151 1007 224 10 10 chr1 74242212 74242415 -122953017 + MTD LTR MaLR 1 203 -216 4 1151 782 240 9 81 chr1 74242421 74242462 -122952970 + B3 SINE B2 2 34 -182 4 1151 1201 110 17 6 chr1 74242462 74242635 -122952797 + B2_Mm2 SINE B2 2 176 -19 4 1151 782 240 9 81 chr1 74242635 74242815 -122952617 + B3 SINE B2 35 207 -9 4 1151 564 232 118 34 chr1 74243044 74243222 -122952210 + MTD LTR MaLR 210 402 -17 4 1151 734 247 14 0 chr1 74243520 74243666 -122951766 + B1F1 SINE Alu 1 148 -1 4 1151 608 251 69 27 chr1 74243691 74243897 -122951535 + B3A SINE B2 1 213 -3 4 1151 956 135 0 0 chr1 74243910 74244051 -122951381 + B1_Mus1 SINE Alu 8 148 0 4 1151 24 0 0 0 chr1 74244073 74244097 -122951335 + AT_rich Low_complexity Low_complexity 1 24 0 4 1151 274 363 80 38 chr1 74244887 74245099 -122950333 + MLT1K LTR MaLR 327 547 -48 4 1151 654 228 186 38 chr1 74245101 74245175 -122950257 + B4 SINE B4 1 77 -215 4 1151 978 138 0 0 chr1 74245175 74245349 -122950083 + (CA)n Simple_repeat Simple_repeat 2 175 0 4 1151 654 228 186 38 chr1 74245349 74245484 -122949948 + B4 SINE B4 78 241 -51 4 1151 237 108 0 0 chr1 74245498 74245535 -122949897 + (AGGGGG)n Simple_repeat Simple_repeat 2 38 0 4 1151 238 250 0 0 chr1 74245567 74245611 -122949821 + MLT1K LTR MaLR 554 597 -13 4 1151 1128 209 5 9 chr1 74246313 74246530 -122948902 + B3 SINE B2 1 216 0 4 1151 1194 55 7 0 chr1 74246570 74246716 -122948716 + B1_Mus2 SINE Alu 1 147 0 4 1151 185 0 40 0 chr1 74246716 74246741 -122948691 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1151 365 231 20 81 chr1 74246763 74246862 -122948570 + B1_Mm SINE Alu 1 93 -54 4 1151 319 253 180 43 chr1 74247045 74247206 -122948226 + RLTR41 LTR ERV1 264 446 0 4 1151 326 247 12 38 chr1 74247212 74247292 -122948140 + B1_Mur2 SINE Alu 67 144 -5 4 1151 1698 257 62 65 chr1 74247388 74247987 -122947445 - L1MA9 LINE L1 -259 6041 5437 4 1151 584 13 40 0 chr1 74247987 74248062 -122947370 + (TTTTG)n Simple_repeat Simple_repeat 1 78 0 4 1151 738 207 15 0 chr1 74248063 74248198 -122947234 - B1_Mur1 SINE Alu -12 137 1 4 1151 1698 262 45 55 chr1 74248198 74248287 -122947145 - L1MA9 LINE L1 -876 5436 5353 4 1151 342 0 0 0 chr1 74248392 74248430 -122947002 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4 1151 976 88 7 21 chr1 74248433 74248573 -122946859 - B2_Mm1t SINE B2 -55 138 1 4 1151 937 232 15 10 chr1 74248591 74248787 -122946645 - B3A SINE B2 0 198 2 4 1151 785 287 25 10 chr1 74248792 74248989 -122946443 - B4A SINE B4 -73 219 20 4 1151 1533 47 5 5 chr1 74249034 74249226 -122946206 - B2_Mm2 SINE B2 0 195 4 4 1151 282 211 52 13 chr1 74249256 74249333 -122946099 - B1F SINE Alu -69 80 1 4 1151 388 210 60 86 chr1 74249334 74249485 -122945947 - L1MA9 LINE L1 -1815 4328 4182 4 1151 367 261 34 25 chr1 74249485 74249603 -122945829 - PB1D7 SINE Alu -1 119 1 4 1151 1153 45 0 0 chr1 74249646 74249780 -122945652 - B1_Mus2 SINE Alu -13 134 1 4 1151 1337 103 16 0 chr1 74249790 74249974 -122945458 - B2_Mm2 SINE B2 -7 188 2 4 1151 231 206 143 0 chr1 74250001 74250064 -122945368 - L1_Mur3 LINE L1 -1960 3920 3849 4 1151 1009 162 46 0 chr1 74250166 74250339 -122945093 + B2_Mm2 SINE B2 8 188 -7 4 1151 2061 168 56 25 chr1 74250371 74250763 -122944669 - MTD LTR MaLR 0 419 16 4 1151 1096 258 75 60 chr1 74250828 74251108 -122944324 - MLT1C LTR MaLR -41 426 157 4 1151 1721 192 149 25 chr1 74251108 74251578 -122943854 + RLTR11A LTR ERVK 1 528 0 4 1151 1096 258 75 60 chr1 74251578 74251713 -122943719 - MLT1C LTR MaLR -311 156 5 4 1151 192 341 45 60 chr1 74251921 74252055 -122943377 + L2a LINE L2 3262 3393 -33 4 1151 1237 21 7 0 chr1 74252070 74252215 -122943217 + B1_Mus2 SINE Alu 1 146 -1 4 1151 357 264 55 0 chr1 74252282 74252373 -122943059 + PB1D10 SINE Alu 22 117 0 4 1151 232 265 70 86 chr1 74252925 74252955 -122942477 + RLTR27 LTR ERVK 121 173 -136 4 1151 241 233 83 0 chr1 74252955 74253015 -122942417 + ID SINE ID 2 66 -158 4 1151 232 265 70 86 chr1 74253015 74253053 -122942379 + RLTR27 LTR ERVK 174 246 -63 4 1151 353 244 0 24 chr1 74253135 74253219 -122942213 + ID4 SINE ID 2 83 0 4 1151 318 315 94 0 chr1 74253536 74253663 -122941769 - MTEa LTR MaLR -238 141 3 4 1151 224 200 140 0 chr1 74253672 74253722 -122941710 + ID4_ SINE ID 21 77 -6 4 1151 795 213 114 26 chr1 74253878 74254071 -122941361 - B3 SINE B2 -6 210 1 4 1151 694 236 74 149 chr1 74254082 74254405 -122941027 + RLTR40 LTR ERVK 433 731 -86 5 1151 371 239 65 11 chr1 74254803 74254896 -122940536 - PB1D10 SINE Alu -19 98 1 5 1151 1071 88 0 0 chr1 74254954 74255091 -122940341 + B1_Mus1 SINE Alu 2 138 -10 5 1151 855 269 5 20 chr1 74255111 74255312 -122940120 + ID_B1 SINE B4 27 224 0 5 1151 333 262 29 19 chr1 74255568 74255673 -122939759 - PB1D10 SINE Alu -1 116 11 5 1151 405 318 14 77 chr1 74255874 74256017 -122939415 + RSINE1 SINE B4 4 137 -28 5 1151 693 173 9 0 chr1 74256325 74256435 -122938997 + B1_Mus1 SINE Alu 1 111 -37 5 1151 285 277 70 51 chr1 74256358 74256514 -122938918 + RLTR25B LTR ERVK 434 592 -436 5 1151 911 159 206 0 chr1 74256588 74256758 -122938674 - B3 SINE B2 -10 206 2 5 1151 245 234 67 105 chr1 74256759 74256782 -122938650 - B1F1 SINE Alu -1 148 126 5 1151 1451 68 11 0 chr1 74256782 74256972 -122938460 + B2_Mm1t SINE B2 2 193 0 5 1151 245 234 67 105 chr1 74256972 74257053 -122938379 - B1F1 SINE Alu -24 125 48 5 1151 344 242 46 83 chr1 74257053 74257080 -122938352 - ID_B1 SINE B4 -13 211 108 5 1151 327 304 14 107 chr1 74257632 74257685 -122937747 + B4A SINE B4 47 86 -206 5 1151 589 174 29 15 chr1 74257685 74257810 -122937622 + B1_Mur2 SINE Alu 2 120 0 5 1151 279 273 86 52 chr1 74257982 74258098 -122937334 + B4A SINE B4 4 123 -169 5 1151 495 206 0 16 chr1 74258206 74258389 -122937043 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1151 567 215 51 83 chr1 74258545 74258702 -122936730 + B4 SINE B4 70 221 -71 5 1151 1094 51 0 0 chr1 74258569 74258707 -122936725 + B1_Mus2 SINE Alu 10 147 0 5 1151 787 72 0 0 chr1 74259386 74259483 -122935949 + U6 snRNA snRNA 1 97 -10 5 1151 198 0 0 0 chr1 74259571 74259593 -122935839 + (TAA)n Simple_repeat Simple_repeat 3 24 0 5 1151 269 267 0 0 chr1 74259757 74259817 -122935615 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1151 811 226 12 42 chr1 74259914 74260080 -122935352 - B3 SINE B2 0 216 56 5 1151 1514 174 4 20 chr1 74260080 74260332 -122935100 - RMER4B LTR ERVK 0 585 338 5 1151 805 87 0 0 chr1 74260324 74260428 -122935004 + B1_Mus2 SINE Alu 24 127 -20 5 1151 1232 133 19 19 chr1 74260469 74260695 -122934737 + L1_Mus3 LINE L1 6357 6582 0 5 1151 1552 134 149 10 chr1 74260706 74261014 -122934418 - RMER4B LTR ERVK -234 351 1 5 1151 322 151 19 0 chr1 74261019 74261072 -122934360 - B2_Mm2 SINE B2 -141 54 1 5 1151 286 300 50 0 chr1 74261175 74261255 -122934177 + ID_B1 SINE B4 83 166 -58 5 1151 495 159 35 53 chr1 74261507 74261620 -122933812 + B1F SINE Alu 16 126 -23 5 1151 333 36 55 0 chr1 74261625 74261680 -122933752 + (CATA)n Simple_repeat Simple_repeat 3 60 0 5 1151 320 286 95 0 chr1 74261967 74262051 -122933381 + B3A SINE B2 3 94 -104 5 1151 225 0 0 0 chr1 74262058 74262083 -122933349 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1151 368 133 0 12 chr1 74262083 74262167 -122933265 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 1151 645 260 158 82 chr1 74262268 74262326 -122933106 + MLT1E1A LTR MaLR 259 316 -338 5 1151 614 222 178 11 chr1 74262326 74262517 -122932915 - ID_B1 SINE B4 0 224 2 5 1151 662 260 158 82 chr1 74262517 74262826 -122932606 + MLT1E1A LTR MaLR 317 680 0 5 1151 584 203 243 28 chr1 74262870 74263047 -122932385 + B3 SINE B2 1 215 -1 5 1151 1149 78 0 0 chr1 74263063 74263205 -122932227 + B1_Mm SINE Alu 2 143 -4 5 1151 583 302 87 16 chr1 74263239 74263424 -122932008 + B4A SINE B4 1 198 -94 5 1151 292 304 496 28 chr1 74263434 74263468 -122931964 + B4A SINE B4 46 228 -63 5 1151 412 267 33 0 chr1 74263468 74263558 -122931874 + B1F SINE Alu 2 94 -55 5 1151 404 91 0 15 chr1 74263559 74263626 -122931806 + (CATA)n Simple_repeat Simple_repeat 3 68 0 5 1151 273 230 12 119 chr1 74263626 74263696 -122931736 + B4A SINE B4 230 292 0 5 1151 253 303 0 13 chr1 74263705 74263782 -122931650 + (CATA)n Simple_repeat Simple_repeat 4 79 0 5 1151 198 0 0 0 chr1 74264312 74264334 -122931098 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1151 1152 51 0 7 chr1 74264334 74264473 -122930959 - B1_Mus1 SINE Alu -10 138 1 5 1151 247 344 0 0 chr1 74264474 74264570 -122930862 - L1M4b LINE L1 -1090 5916 5821 5 1151 249 345 69 25 chr1 74264643 74264845 -122930587 - L1M4b LINE L1 -1178 5828 5618 5 1151 3170 160 42 21 chr1 74264871 74265484 -122929948 + Lx3C LINE L1 6349 6974 -2 5 1151 465 220 92 64 chr1 74265504 74265518 -122929914 + B4 SINE B4 79 220 -69 5 1151 889 137 0 0 chr1 74265518 74265642 -122929790 + B1_Mus1 SINE Alu 2 125 -23 5 1151 658 306 34 40 chr1 74265702 74265998 -122929434 - L1M4b LINE L1 -1439 5561 5268 5 1151 448 251 45 14 chr1 74265998 74266125 -122929307 - B1F1 SINE Alu -1 146 13 5 1151 399 312 9 9 chr1 74266028 74266138 -122929294 - ID_B1 SINE B4 -37 187 78 5 1151 213 200 0 39 chr1 74266166 74266218 -122929214 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 5 1151 769 246 35 15 chr1 74266218 74266416 -122929016 - B3 SINE B2 -13 203 2 5 1151 632 256 29 0 chr1 74266447 74266584 -122928848 - ID_B1 SINE B4 -6 218 78 5 1151 427 270 16 8 chr1 74266606 74266733 -122928699 - L1M4b LINE L1 -4144 2864 2737 5 1151 660 329 72 41 chr1 74266844 74267054 -122928378 - L1M4b LINE L1 -4493 2515 2296 5 1151 183 42 0 0 chr1 74267054 74267078 -122928354 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1151 713 274 79 33 chr1 74267078 74267406 -122928026 - L1M4b LINE L1 -4713 2295 1954 5 1151 399 248 119 0 chr1 74267415 74267516 -122927916 - B3 SINE B2 -103 113 1 5 1151 225 0 0 0 chr1 74267521 74267546 -122927886 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 5 1151 642 168 0 18 chr1 74267564 74267673 -122927759 - B1_Mur4 SINE Alu 0 150 44 5 1151 1035 130 46 51 chr1 74267829 74267856 -122927576 - B2_Mm2 SINE B2 -1 194 175 5 1151 1320 86 27 5 chr1 74267856 74268044 -122927388 + B2_Mm1t SINE B2 2 193 0 5 1151 766 197 0 0 chr1 74268044 74268181 -122927251 - B1_Mur3 SINE Alu -12 137 1 5 1151 660 26 0 0 chr1 74268191 74268269 -122927163 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 5 1151 1035 130 46 51 chr1 74268269 74268424 -122927008 - B2_Mm2 SINE B2 -32 163 3 5 1151 1262 48 0 0 chr1 74268437 74268584 -122926848 - B1_Mm SINE Alu 0 147 1 5 1151 761 279 5 30 chr1 74268584 74268786 -122926646 - B3A SINE B2 0 198 1 5 1151 2065 151 22 0 chr1 74268851 74269170 -122926262 + ORR1A3 LTR MaLR 1 326 0 5 1151 240 35 0 0 chr1 74269186 74269215 -122926217 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1151 1083 195 34 0 chr1 74269667 74269872 -122925560 - B3 SINE B2 0 216 5 5 1151 280 302 70 21 chr1 74270032 74270174 -122925258 - LTR33 LTR ERVL -242 273 125 5 1151 550 267 202 31 chr1 74270286 74270479 -122924953 + B4 SINE B4 2 227 -65 5 1151 543 176 8 92 chr1 74270488 74270607 -122924825 + B1_Mur3 SINE Alu 41 149 0 5 1151 31 0 0 0 chr1 74270607 74270638 -122924794 + AT_rich Low_complexity Low_complexity 1 31 0 5 1151 1201 75 0 0 chr1 74270644 74270790 -122924642 + B1_Mm SINE Alu 2 147 0 5 1151 438 79 0 0 chr1 74271052 74271115 -122924317 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1151 1170 82 0 0 chr1 74271330 74271476 -122923956 - B1_Mus2 SINE Alu 0 147 2 5 1151 661 272 29 82 chr1 74271601 74271809 -122923623 + B3A SINE B2 1 197 -1 5 1151 25 51 0 0 chr1 74271809 74271848 -122923584 + AT_rich Low_complexity Low_complexity 1 39 0 5 1151 752 204 130 31 chr1 74271904 74272096 -122923336 - B3 SINE B2 -5 211 1 5 1151 25 0 0 0 chr1 74272102 74272127 -122923305 + AT_rich Low_complexity Low_complexity 1 25 0 5 1151 2027 125 72 21 chr1 74272251 74272586 -122922846 - MTC LTR MaLR 0 421 70 5 1151 205 180 0 74 chr1 74272586 74272604 -122922828 + T-rich Low_complexity Low_complexity 33 50 0 5 1151 386 20 0 19 chr1 74272604 74272656 -122922776 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1151 1258 42 0 0 chr1 74272656 74272800 -122922632 - B1_Mus2 SINE Alu -3 144 1 5 1151 205 180 0 74 chr1 74272800 74272834 -122922598 + T-rich Low_complexity Low_complexity 2 32 0 5 1151 1177 68 7 0 chr1 74272834 74272980 -122922452 - B1_Mus1 SINE Alu 0 148 2 5 1151 398 127 97 14 chr1 74272981 74273053 -122922379 - MTC LTR MaLR -341 80 3 5 1151 1097 269 17 41 chr1 74273158 74273453 -122921979 + B4 SINE B4 5 292 0 5 1151 340 169 46 0 chr1 74273490 74273555 -122921877 - Lx8 LINE L1 -227 7246 7179 5 1151 367 231 81 101 chr1 74273603 74273627 -122921805 - MT2B LTR ERVL -251 333 248 5 1151 854 148 0 0 chr1 74273627 74273755 -122921677 - B1_Mur3 SINE Alu -7 142 15 5 1151 367 231 81 101 chr1 74273755 74273779 -122921653 - MT2B LTR ERVL -251 247 152 5 1151 260 399 52 57 chr1 74273837 74274031 -122921401 + MIR SINE MIR 36 228 -34 5 1151 591 230 115 45 chr1 74274286 74274486 -122920946 + B3 SINE B2 3 216 0 5 1151 1171 57 0 0 chr1 74274523 74274663 -122920769 - B1_Mus1 SINE Alu -8 140 1 5 1151 441 310 62 43 chr1 74274799 74274945 -122920487 - ID_B1 SINE B4 0 224 76 5 1151 2113 174 30 112 chr1 74274945 74275410 -122920022 + RMER19B LTR ERVK 1 427 -475 5 1151 310 54 0 0 chr1 74275407 74275444 -122919988 + tRNA-Arg-AGA tRNA tRNA 1 37 -39 5 1151 4675 54 0 0 chr1 74275444 74276017 -122919415 + L1Md_F2 LINE L1 6010 6582 0 5 1151 382 218 0 65 chr1 74276018 74276111 -122919321 + RMER19B LTR ERVK 408 494 -408 5 1151 260 369 46 59 chr1 74276279 74276498 -122918934 + RLTR41 LTR ERV1 186 401 -45 5 1151 2092 131 82 57 chr1 74276532 74276877 -122918555 + RMER19B LTR ERVK 488 854 -48 5 1151 1656 26 0 20 chr1 74276877 74277073 -122918359 - B2_Mm1a SINE B2 0 193 2 5 1151 2092 131 82 57 chr1 74277073 74277132 -122918300 + RMER19B LTR ERVK 855 902 0 5 1151 947 149 234 0 chr1 74277316 74277491 -122917941 - B3 SINE B2 0 216 1 5 1151 219 69 0 0 chr1 74277619 74277648 -122917784 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 5 1151 238 143 62 31 chr1 74277910 74278021 -122917411 - L1Md_T LINE L1 0 6582 6516 5 1151 535 250 16 32 chr1 74278151 74278275 -122917157 - ID_B1 SINE B4 0 224 103 5 1151 688 226 92 35 chr1 74278319 74278330 -122917102 - ID_B1 SINE B4 -5 219 212 6 1151 270 0 0 0 chr1 74278330 74278360 -122917072 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 6 1151 688 226 92 35 chr1 74278360 74278522 -122916910 - ID_B1 SINE B4 -13 211 36 6 1151 219 69 0 0 chr1 74278773 74278802 -122916630 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1151 520 31 15 0 chr1 74278802 74278867 -122916565 - B1_Mur4 SINE Alu -9 141 76 6 1151 1504 141 24 0 chr1 74278868 74279116 -122916316 + ORR1C1 LTR MaLR 125 378 0 6 1151 421 289 15 69 chr1 74279122 74279252 -122916180 + RSINE1 SINE B4 13 135 -30 6 1151 288 0 0 0 chr1 74279252 74279284 -122916148 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1151 300 184 78 13 chr1 74279314 74279391 -122916041 - B3 SINE B2 0 216 135 6 1151 2567 105 41 13 chr1 74279582 74280011 -122915421 + RLTR33 LTR ERVK 2 534 -144 6 1151 1138 111 0 58 chr1 74280011 74280202 -122915230 + B2_Mm2 SINE B2 2 181 -14 6 1151 586 312 82 0 chr1 74280240 74280410 -122915022 - ID_B1 SINE B4 -33 191 8 6 1151 435 238 170 85 chr1 74280548 74280736 -122914696 + B3 SINE B2 1 204 -12 6 1151 258 32 0 0 chr1 74280804 74280835 -122914597 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1151 349 254 84 8 chr1 74280883 74281014 -122914418 - B1F SINE Alu -8 141 1 6 1151 534 354 140 20 chr1 74281095 74281496 -122913936 - LTR31 LTR ERV1 0 619 171 6 1151 526 258 24 8 chr1 74281588 74281713 -122913719 + RSINE1 SINE B4 2 128 -37 6 1151 813 186 0 0 chr1 74281793 74281922 -122913510 - B1_Mur1 SINE Alu -12 137 9 6 1151 294 284 105 0 chr1 74281970 74282065 -122913367 + PB1D10 SINE Alu 6 110 -7 6 1151 520 261 33 25 chr1 74282075 74282197 -122913235 + RSINE1 SINE B4 1 123 -42 6 1151 211 85 43 0 chr1 74282410 74282457 -122912975 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 6 1151 931 24 186 0 chr1 74282458 74282582 -122912850 - B1_Mm SINE Alu 0 147 1 6 1151 213 308 16 40 chr1 74282992 74283117 -122912315 + G-rich Low_complexity Low_complexity 4 125 0 6 1151 183 42 0 0 chr1 74283129 74283153 -122912279 + (CGG)n Simple_repeat Simple_repeat 2 25 0 6 1151 211 267 0 0 chr1 74283244 74283304 -122912128 + C-rich Low_complexity Low_complexity 6 65 0 6 1151 375 236 56 9 chr1 74285292 74285390 -122910042 + ID_B1 SINE B4 81 176 -116 6 1151 384 298 18 0 chr1 74285664 74285778 -122909654 + PB1D9 SINE Alu 5 120 0 6 1151 476 296 72 26 chr1 74286187 74286381 -122909051 - MER3 DNA MER1_type -6 203 1 6 1151 446 282 104 32 chr1 74287659 74287813 -122907619 - B4A SINE B4 -22 270 106 6 1151 241 231 75 25 chr1 74287812 74287892 -122907540 - RSINE1 SINE B4 -73 92 9 6 1151 378 174 83 0 chr1 74287909 74287988 -122907444 - PB1D7 SINE Alu -29 120 39 6 1151 1214 73 87 27 chr1 74288030 74288213 -122907219 - B2_Mm2 SINE B2 0 195 2 6 1151 1247 34 7 0 chr1 74288328 74288474 -122906958 + B1_Mm SINE Alu 1 147 0 6 1151 186 133 0 0 chr1 74288477 74288507 -122906925 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1151 585 269 104 12 chr1 74288749 74288922 -122906510 + B3A SINE B2 1 189 -9 6 1151 803 192 116 30 chr1 74288934 74289133 -122906299 - B3 SINE B2 0 216 1 6 1151 615 241 19 84 chr1 74289162 74289316 -122906116 + ID_B1 SINE B4 80 223 -1 6 1151 279 194 85 42 chr1 74289354 74289433 -122905999 + B1_Mus1 SINE Alu 2 85 -63 6 1151 305 218 18 0 chr1 74289402 74289457 -122905975 - RSINE1 SINE B4 -94 71 16 6 1151 491 217 122 0 chr1 74289562 74289677 -122905755 + ID_B1 SINE B4 93 221 -3 6 1151 1175 111 0 52 chr1 74289768 74289959 -122905473 + B2_Mm2 SINE B2 1 181 -14 6 1151 329 100 26 86 chr1 74290025 74290142 -122905290 + B2_Mm2 SINE B2 47 192 -3 6 1151 486 0 0 0 chr1 74290194 74290248 -122905184 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1151 263 238 73 73 chr1 74290957 74291066 -122904366 - ID_B1 SINE B4 0 224 116 6 1151 439 200 222 28 chr1 74291104 74291212 -122904220 - B1_Mus1 SINE Alu -2 146 18 6 1151 459 0 0 0 chr1 74291245 74291296 -122904136 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1151 647 230 47 23 chr1 74291443 74291628 -122903804 + B3A SINE B2 2 191 -4 6 1151 401 219 0 0 chr1 74292525 74292598 -122902834 - RSINE1 SINE B4 -39 126 54 6 1151 947 211 0 6 chr1 74292729 74292896 -122902536 - B3 SINE B2 -42 174 9 6 1151 1186 44 0 0 chr1 74293098 74293234 -122902198 + B1_Mm SINE Alu 3 138 -9 6 1151 240 59 0 0 chr1 74293234 74293268 -122902164 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1151 279 0 0 0 chr1 74293396 74293427 -122902005 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1151 447 329 13 20 chr1 74293443 74293592 -122901840 + B1_Mur1 SINE Alu 2 149 0 6 1151 1326 92 27 0 chr1 74293930 74294114 -122901318 - B2_Mm2 SINE B2 -6 189 1 6 1151 300 240 143 68 chr1 74294186 74294347 -122901085 + L1MC5 LINE L1 7616 7788 -173 6 1151 338 245 109 73 chr1 74295047 74295157 -122900275 - PB1D9 SINE Alu -6 114 1 6 1151 363 181 48 0 chr1 74296319 74296402 -122899030 + B1F1 SINE Alu 12 98 -51 6 1151 606 203 66 22 chr1 74296465 74296601 -122898831 + RSINE1 SINE B4 15 156 -9 6 1151 240 270 103 51 chr1 74297071 74297188 -122898244 - Charlie14a DNA MER1_type -622 542 420 6 1151 523 291 98 25 chr1 74298174 74298273 -122897159 + B4A SINE B4 26 140 -152 6 1151 2212 124 131 8 chr1 74298273 74298663 -122896769 - BGLII_B LTR ERVK 0 441 4 6 1151 523 291 98 25 chr1 74298663 74298755 -122896677 + B4A SINE B4 141 232 -60 6 1151 671 168 0 9 chr1 74298755 74298863 -122896569 + B3 SINE B2 2 108 -108 6 1151 1100 49 7 7 chr1 74298928 74299071 -122896361 + B1_Mm SINE Alu 5 147 0 6 1151 1431 65 22 0 chr1 74299354 74299539 -122895893 - B2_Mm2 SINE B2 -5 190 2 6 1151 360 0 0 0 chr1 74299539 74299579 -122895853 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1151 801 189 14 0 chr1 74299598 74299746 -122895686 + B1_Mur4 SINE Alu 1 150 0 6 1151 181 320 39 39 chr1 74300392 74300470 -122894962 + MIR3 SINE MIR 15 92 -116 6 1151 376 274 9 47 chr1 74300491 74300598 -122894834 - PB1D10 SINE Alu -9 108 6 6 1151 213 317 18 55 chr1 74300505 74300615 -122894817 - ID_B1 SINE B4 -49 175 70 6 1151 212 319 75 119 chr1 74300695 74300855 -122894577 - MIRb SINE MIR -115 153 1 6 1151 212 357 84 0 chr1 74300855 74300975 -122894457 + MIRc SINE MIR 118 250 -18 6 1151 459 188 24 0 chr1 74301890 74301975 -122893457 - B3 SINE B2 -121 95 9 6 1151 504 259 48 26 chr1 74302031 74302213 -122893219 + B3 SINE B2 1 216 0 6 1151 241 299 14 56 chr1 74302703 74302774 -122892658 + ID4 SINE ID 2 69 -14 6 1151 1443 235 52 12 chr1 74302884 74303285 -122892147 - MTD LTR MaLR 0 419 3 6 1151 326 245 111 19 chr1 74303886 74303994 -122891438 + PB1 SINE Alu 1 118 -9 6 1151 1418 50 55 0 chr1 74304343 74304502 -122890930 + B2_Mm1a SINE B2 2 160 -33 6 1151 205 27 26 51 chr1 74304502 74304541 -122890891 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 1151 1418 50 55 0 chr1 74304541 74304563 -122890869 + B2_Mm1a SINE B2 161 192 -1 6 1151 1087 81 0 0 chr1 74305031 74305167 -122890265 - B1_Mus1 SINE Alu -12 136 1 6 1151 363 271 34 41 chr1 74305167 74305312 -122890120 - B1F SINE Alu -3 146 2 6 1151 384 212 11 23 chr1 74305369 74305456 -122889976 - U6 snRNA snRNA -21 86 1 6 1151 272 301 136 0 chr1 74305456 74305559 -122889873 - PB1D10 SINE Alu 0 117 1 6 1151 1187 74 0 0 chr1 74305795 74305943 -122889489 - B1_Mus1 SINE Alu 0 148 1 6 1151 754 185 15 0 chr1 74306276 74306406 -122889026 - B1_Mur2 SINE Alu -10 139 8 6 1151 234 0 0 0 chr1 74306565 74306591 -122888841 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1151 1136 186 142 11 chr1 74306609 74306881 -122888551 - ORR1B2 LTR MaLR -7 360 1 6 1151 206 32 0 31 chr1 74307479 74307511 -122887921 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1151 1333 45 55 33 chr1 74307511 74307683 -122887749 - B2_Mm1t SINE B2 -14 179 2 6 1151 1257 76 47 42 chr1 74308259 74308451 -122886981 + B2_Mm2 SINE B2 3 195 0 6 1151 308 198 29 0 chr1 74308707 74308780 -122886652 - PB1D10 SINE Alu -19 130 50 6 1151 327 205 51 0 chr1 74309161 74309239 -122886193 + ID2 SINE ID 1 82 -1 6 1151 477 0 0 0 chr1 74309709 74309762 -122885670 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 6 1151 430 258 0 0 chr1 74309762 74309851 -122885581 - B1_Mus2 SINE Alu -12 135 47 6 1151 229 241 0 53 chr1 74309806 74309863 -122885569 - 4.5SRNA scRNA scRNA -6 88 35 6 1151 337 296 31 0 chr1 74310482 74310580 -122884852 + B3 SINE B2 1 101 -115 6 1151 289 329 0 35 chr1 74310653 74310738 -122884694 + ID4 SINE ID 2 83 0 6 1151 373 207 114 11 chr1 74311823 74311911 -122883521 + PB1 SINE Alu 31 127 0 6 1151 713 313 37 41 chr1 74311918 74312149 -122883283 + B4A SINE B4 2 231 -61 6 1151 294 274 45 56 chr1 74312149 74312238 -122883194 + B1_Mur3 SINE Alu 1 88 -61 6 1151 201 39 0 0 chr1 74312314 74312340 -122883092 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1151 1144 78 0 0 chr1 74312340 74312482 -122882950 - B1_Mus2 SINE Alu -2 145 4 6 1151 1507 171 25 28 chr1 74312486 74312769 -122882663 - ORR1A4 LTR MaLR -42 287 6 7 1151 655 171 26 0 chr1 74312770 74312887 -122882545 - B1_Mus1 SINE Alu -27 121 2 7 1151 344 269 31 110 chr1 74312887 74312949 -122882483 - MT2B2 LTR ERVL -427 157 109 7 1151 289 250 0 0 chr1 74312986 74313038 -122882394 + B4A SINE B4 237 288 -4 7 1151 228 86 0 0 chr1 74313038 74313073 -122882359 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1151 628 212 0 17 chr1 74313737 74313857 -122881575 - PB1D9 SINE Alu -2 118 1 7 1151 454 191 34 60 chr1 74313998 74314115 -122881317 + PB1D9 SINE Alu 5 118 -2 7 1151 22 0 0 0 chr1 74314558 74314580 -122880852 + AT_rich Low_complexity Low_complexity 1 22 0 7 1151 464 233 11 0 chr1 74314965 74315055 -122880377 - PB1D7 SINE Alu -19 101 11 7 1151 231 338 50 0 chr1 74314985 74315065 -122880367 - B4A SINE B4 -126 166 83 7 1151 1443 225 121 122 chr1 74315190 74315746 -122879686 - RMER19C LTR ERVK 0 611 57 7 1151 1248 103 40 0 chr1 74315746 74315921 -122879511 + B2_Mm2 SINE B2 1 182 -13 7 1151 301 105 140 0 chr1 74315955 74316012 -122879420 + B2_Mm1a SINE B2 127 191 -2 7 1151 286 136 152 0 chr1 74316009 74316068 -122879364 - RMER19C LTR ERVK -543 68 1 7 1151 249 33 0 0 chr1 74316170 74316200 -122879232 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1151 337 309 95 0 chr1 74316201 74316327 -122879105 - B3A SINE B2 -41 157 20 7 1151 634 202 100 8 chr1 74316344 74316464 -122878968 + ID_B1 SINE B4 94 224 0 7 1151 334 272 31 42 chr1 74316524 74316620 -122878812 - PB1D9 SINE Alu -8 112 18 7 1151 383 315 135 26 chr1 74316948 74317215 -122878217 - L1MD2 LINE L1 -11 6348 6053 7 1151 260 291 60 127 chr1 74317433 74317567 -122877865 - B1_Mm SINE Alu -15 132 8 7 1151 297 228 0 56 chr1 74317508 74317581 -122877851 - ID_B1 SINE B4 -146 146 81 7 1151 244 284 92 0 chr1 74317601 74317710 -122877722 - PB1D7 SINE Alu 0 120 2 7 1152 361 337 121 10 chr1 74317909 74318107 -122877325 - Lx8 LINE L1 -265 7208 6989 7 1152 1851 176 86 23 chr1 74318166 74318561 -122876871 - RMER1B Other Other 0 1066 647 7 1152 557 260 0 39 chr1 74318594 74318722 -122876710 + B1_Mur1 SINE Alu 27 149 0 7 1152 496 206 58 128 chr1 74318732 74318888 -122876544 + B1_Mur4 SINE Alu 1 145 -5 7 1152 899 59 0 8 chr1 74318898 74319017 -122876415 + B1_Mm SINE Alu 30 147 0 7 1152 299 200 91 15 chr1 74319045 74319111 -122876321 - Lx8 LINE L1 -1077 6396 6326 7 1152 974 96 81 0 chr1 74319180 74319316 -122876116 + B1_Mus1 SINE Alu 2 148 0 7 1152 28 29 0 0 chr1 74319333 74319368 -122876064 + AT_rich Low_complexity Low_complexity 1 35 0 7 1152 578 115 46 0 chr1 74319368 74319455 -122875977 + B2_Mm2 SINE B2 1 91 -104 7 1152 1246 106 6 16 chr1 74319488 74319670 -122875762 - B2_Mm2 SINE B2 -14 181 2 7 1152 229 314 14 14 chr1 74319740 74319811 -122875621 + Lx8 LINE L1 7208 7278 -195 7 1152 321 245 117 0 chr1 74319960 74320054 -122875378 + PB1D7 SINE Alu 5 109 -11 7 1152 289 246 0 30 chr1 74320171 74320238 -122875194 - ID4_ SINE ID -10 73 9 7 1152 603 0 0 0 chr1 74320295 74320362 -122875070 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1152 262 281 47 35 chr1 74320805 74320890 -122874542 + B4A SINE B4 99 184 -108 7 1152 1067 167 17 56 chr1 74320904 74321138 -122874294 + URR1B DNA MER1_type 1 225 0 7 1152 328 266 0 12 chr1 74321180 74321260 -122874172 + PB1D10 SINE Alu 1 79 -38 7 1152 230 235 75 96 chr1 74322458 74322552 -122872880 - PB1D9 SINE Alu 0 120 29 7 1152 322 321 26 18 chr1 74322554 74322668 -122872764 - MIR SINE MIR -87 175 61 7 1152 336 269 43 11 chr1 74322851 74322945 -122872487 - PB1D7 SINE Alu -10 110 14 7 1152 527 276 26 57 chr1 74323006 74323233 -122872199 + ID_B1 SINE B4 2 221 -3 7 1152 181 105 158 0 chr1 74324289 74324327 -122871105 + L3 LINE CR1 879 922 -3567 7 1152 180 0 0 0 chr1 74324970 74324990 -122870442 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1152 243 0 0 0 chr1 74330198 74330225 -122865207 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1152 201 312 97 44 chr1 74330227 74330341 -122865091 - MIRb SINE MIR -130 138 19 7 1152 189 333 0 31 chr1 74331825 74331890 -122863542 - MIR3 SINE MIR -7 201 139 7 1152 317 268 173 1 chr1 74331975 74332119 -122863313 + MIR3 SINE MIR 9 171 -37 7 1152 494 170 198 35 chr1 74334257 74334373 -122861059 + B1_Mus2 SINE Alu 1 135 -12 7 1152 23 33 0 0 chr1 74334422 74334452 -122860980 + AT_rich Low_complexity Low_complexity 1 30 0 7 1152 234 81 0 0 chr1 74335655 74335692 -122859740 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1152 504 0 0 0 chr1 74337675 74337731 -122857701 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1152 189 0 0 0 chr1 74338610 74338631 -122856801 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1152 685 243 22 0 chr1 74338631 74338767 -122856665 - RSINE1 SINE B4 -18 147 9 7 1152 687 270 33 36 chr1 74339779 74339993 -122855439 + B3A SINE B2 15 216 0 7 1152 198 0 0 0 chr1 74341208 74341230 -122854202 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1152 540 95 0 0 chr1 74341232 74341316 -122854116 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1152 993 146 197 0 chr1 74344293 74344471 -122850961 + B3 SINE B2 3 215 -1 7 1152 509 240 45 23 chr1 74346089 74346221 -122849211 + B1_Mur1 SINE Alu 2 136 -13 7 1152 1158 49 0 0 chr1 74346597 74346740 -122848692 + B1_Mus1 SINE Alu 2 144 -4 7 1152 624 116 0 0 chr1 74346768 74346863 -122848569 + (GA)n Simple_repeat Simple_repeat 2 96 0 7 1152 719 169 29 7 chr1 74346867 74347004 -122848428 + B1_Mur2 SINE Alu 2 141 -8 7 1152 514 252 26 0 chr1 74347270 74347385 -122848047 + B1F1 SINE Alu 1 118 -31 7 1152 407 324 7 14 chr1 74347385 74347406 -122848026 + ID_B1 SINE B4 82 216 -8 7 1152 328 348 55 18 chr1 74347660 74347824 -122847608 + MIR3 SINE MIR 34 203 -5 7 1152 626 238 14 7 chr1 74348194 74348338 -122847094 + RSINE1 SINE B4 15 159 -6 7 1152 349 264 0 0 chr1 74348375 74348447 -122846985 + PB1D10 SINE Alu 5 76 -41 7 1152 213 280 23 138 chr1 74348912 74348999 -122846433 - PB1D7 SINE Alu -7 113 37 7 1152 261 57 0 0 chr1 74349814 74349849 -122845583 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1152 281 255 134 31 chr1 74349874 74349971 -122845461 + PB1D7 SINE Alu 2 108 -12 7 1152 351 0 0 0 chr1 74349971 74350010 -122845422 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1152 306 0 0 0 chr1 74350011 74350045 -122845387 + (CCAA)n Simple_repeat Simple_repeat 1 34 0 7 1152 189 107 0 0 chr1 74350746 74350774 -122844658 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 7 1152 240 283 42 42 chr1 74351103 74351199 -122844233 - PB1D10 SINE Alu -1 116 21 7 1152 250 258 0 39 chr1 74351279 74351377 -122844055 + ID4 SINE ID 2 96 -56 7 1152 213 121 0 0 chr1 74351477 74351510 -122843922 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1152 379 260 40 0 chr1 74351743 74351843 -122843589 + ID_B1 SINE B4 12 115 -109 7 1152 351 279 126 0 chr1 74351872 74351983 -122843449 - RMER5 LTR ERV1 -22 512 388 7 1152 2032 94 42 61 chr1 74352001 74352331 -122843101 - ORR1A3 LTR MaLR -2 324 1 7 1152 657 223 29 7 chr1 74352349 74352489 -122842943 - B1_Mur1 SINE Alu 0 149 7 7 1152 983 221 130 69 chr1 74352491 74352869 -122842563 - RMER5 LTR ERV1 -131 403 3 7 1152 352 245 83 21 chr1 74352869 74352965 -122842467 + ID_B1 SINE B4 123 224 0 7 1152 275 346 47 0 chr1 74353157 74353261 -122842171 + PB1D7 SINE Alu 3 111 -9 7 1152 409 280 25 0 chr1 74353261 74353379 -122842053 + RSINE1 SINE B4 2 122 -43 7 1152 240 35 0 0 chr1 74353420 74353449 -122841983 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1152 1191 93 33 0 chr1 74353483 74353666 -122841766 - B2_Mm1a SINE B2 -3 190 2 7 1152 765 197 0 0 chr1 74353666 74353803 -122841629 + B1_Mur1 SINE Alu 13 149 0 7 1152 766 135 16 23 chr1 74354032 74354161 -122841271 - B2_Mm2 SINE B2 -65 130 3 7 1152 513 203 175 17 chr1 74354197 74354317 -122841115 - B1_Mur2 SINE Alu 0 149 11 7 1152 217 197 87 116 chr1 74354432 74354501 -122840931 - PB1D10 SINE Alu -48 69 3 7 1152 705 107 214 0 chr1 74354541 74354681 -122840751 - B2_Mm2 SINE B2 -25 170 1 7 1152 336 197 52 13 chr1 74354816 74354893 -122840539 - B4 SINE B4 -102 190 111 7 1152 396 246 50 50 chr1 74354985 74355095 -122840337 + B4A SINE B4 22 132 -160 7 1152 1110 216 288 42 chr1 74355095 74355550 -122839882 - RMER2 LTR ERV1 0 567 1 7 1152 726 139 0 17 chr1 74355969 74356086 -122839346 + B1_Mus2 SINE Alu 20 134 -13 7 1152 226 304 101 0 chr1 74356169 74356248 -122839184 + MT2B2 LTR ERVL 152 238 -346 7 1152 360 309 55 8 chr1 74356184 74356311 -122839121 + ID_B1 SINE B4 92 224 0 7 1152 353 290 7 78 chr1 74356321 74356463 -122838969 + MER53 DNA hAT 62 193 0 7 1152 234 0 0 0 chr1 74356933 74356959 -122838473 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1152 1238 87 29 0 chr1 74356961 74357134 -122838298 - B2_Mm1a SINE B2 -15 178 1 7 1152 295 203 69 42 chr1 74357161 74357233 -122838199 + MT2B LTR ERVL 183 256 -345 7 1152 430 218 23 0 chr1 74357175 74357262 -122838170 + B1_Mus2 SINE Alu 44 132 -15 7 1152 188 182 0 22 chr1 74357281 74357326 -122838106 + GA-rich Low_complexity Low_complexity 4 47 0 7 1152 674 247 0 27 chr1 74357500 74357650 -122837782 + B1_Mur1 SINE Alu 2 147 -2 8 1152 1236 77 39 6 chr1 74357656 74357838 -122837594 + B2_Mm2 SINE B2 2 189 -6 8 1152 5220 93 30 19 chr1 74357862 74358659 -122836773 - RLTR13D1 LTR ERVK 0 806 1 8 1152 270 286 118 8 chr1 74358931 74359058 -122836374 + MIR SINE MIR 78 218 -44 8 1152 274 287 97 16 chr1 74359672 74359796 -122835636 - MER3 DNA MER1_type -24 185 52 8 1152 407 246 167 0 chr1 74359871 74359985 -122835447 - ID_B1 SINE B4 0 224 92 8 1152 432 194 52 61 chr1 74360398 74360513 -122834919 + RSINE1 SINE B4 6 119 -46 8 1152 564 120 0 0 chr1 74360513 74360613 -122834819 + (TC)n Simple_repeat Simple_repeat 2 101 0 8 1152 306 0 0 0 chr1 74360613 74360647 -122834785 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1152 1155 61 0 0 chr1 74360688 74360835 -122834597 - B1_Mus2 SINE Alu 0 147 1 8 1152 207 100 0 0 chr1 74361011 74361041 -122834391 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 8 1152 864 52 0 0 chr1 74361043 74361158 -122834274 - B1_Mus2 SINE Alu 0 147 33 8 1152 264 269 30 0 chr1 74361159 74361226 -122834206 - Lx8 LINE L1 -219 7254 7186 8 1152 966 238 55 59 chr1 74361489 74361779 -122833653 - MTD LTR MaLR -123 296 8 8 1152 310 324 46 9 chr1 74361796 74361905 -122833527 - B1F SINE Alu 0 149 37 8 1152 228 303 15 0 chr1 74361951 74362017 -122833415 + B1F SINE Alu 36 102 -47 8 1152 529 259 23 15 chr1 74362039 74362172 -122833260 + B1_Mur1 SINE Alu 3 136 -13 8 1152 495 0 0 0 chr1 74362176 74362231 -122833201 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 8 1152 782 144 32 0 chr1 74362266 74362391 -122833041 - B3 SINE B2 -86 130 2 8 1152 736 169 72 14 chr1 74362447 74362585 -122832847 + B1_Mur4 SINE Alu 5 150 0 8 1152 774 171 14 14 chr1 74362588 74362736 -122832696 + B1_Mur4 SINE Alu 2 149 -1 8 1152 288 0 0 0 chr1 74362841 74362873 -122832559 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1152 797 226 51 6 chr1 74363333 74363511 -122831921 - B3 SINE B2 0 216 31 8 1152 1138 55 7 0 chr1 74363511 74363657 -122831775 + B1_Mm SINE Alu 1 147 0 8 1152 224 77 26 0 chr1 74363658 74363697 -122831735 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 8 1152 403 197 0 13 chr1 74363755 74363832 -122831600 - ID_B1 SINE B4 -2 222 147 8 1152 375 358 42 37 chr1 74363952 74364167 -122831265 + MIRb SINE MIR 9 224 -44 8 1152 188 111 0 27 chr1 74364233 74364270 -122831162 + (AGGGGG)n Simple_repeat Simple_repeat 1 36 0 8 1152 231 293 13 51 chr1 74364494 74364573 -122830859 - ID4 SINE ID -4 79 4 8 1152 462 220 93 0 chr1 74364791 74364909 -122830523 + ID_B1 SINE B4 86 214 -10 8 1152 1225 106 26 11 chr1 74364909 74365067 -122830365 + B2_Mm2 SINE B2 1 158 -37 8 1152 180 0 0 0 chr1 74365067 74365087 -122830345 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1152 1225 106 26 11 chr1 74365087 74365119 -122830313 + B2_Mm2 SINE B2 159 194 -1 8 1152 283 276 45 84 chr1 74365119 74365150 -122830282 + B1F SINE Alu 119 148 -1 8 1152 345 272 32 11 chr1 74365517 74365610 -122829822 + B4 SINE B4 5 99 -193 8 1152 263 213 131 0 chr1 74365671 74365732 -122829700 + B4 SINE B4 200 268 -24 8 1152 323 232 13 13 chr1 74365773 74365930 -122829502 + (CA)n Simple_repeat Simple_repeat 2 158 0 8 1152 1028 102 0 0 chr1 74365944 74366091 -122829341 + B1_Mus1 SINE Alu 1 147 -1 8 1152 538 285 75 5 chr1 74366125 74366211 -122829221 + B3 SINE B2 2 93 -123 8 1152 246 62 0 0 chr1 74366211 74366243 -122829189 + (TATG)n Simple_repeat Simple_repeat 3 34 0 8 1152 538 285 75 5 chr1 74366243 74366357 -122829075 + B3 SINE B2 94 214 -2 8 1152 1288 94 140 59 chr1 74366370 74366594 -122828838 + Lx LINE L1 6362 6623 -31 8 1152 1260 77 16 21 chr1 74366594 74366780 -122828652 - B2_Mm2 SINE B2 -8 187 3 8 1152 1288 94 140 59 chr1 74366780 74366826 -122828606 + Lx LINE L1 6624 6654 0 8 1152 1161 48 0 0 chr1 74367271 74367418 -122828014 + B1_Mus2 SINE Alu 1 147 0 8 1152 255 61 0 0 chr1 74367421 74367454 -122827978 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1152 1227 83 0 0 chr1 74367489 74367658 -122827774 + (TTCCC)n Simple_repeat Simple_repeat 4 172 0 8 1152 1452 174 38 4 chr1 74367728 74367994 -122827438 + ORR1D1 LTR MaLR 1 275 -99 8 1152 303 225 56 0 chr1 74368156 74368245 -122827187 - MIR SINE MIR 0 262 169 8 1152 454 219 72 16 chr1 74368397 74368522 -122826910 + RSINE1 SINE B4 1 132 -33 8 1152 198 103 0 0 chr1 74368545 74368574 -122826858 + (CCA)n Simple_repeat Simple_repeat 1 29 0 8 1152 233 236 36 0 chr1 74368592 74368647 -122826785 + MLT1L LTR MaLR 413 469 -141 8 1152 329 221 45 23 chr1 74368655 74368743 -122826689 + B1F SINE Alu 5 94 -55 8 1152 462 36 0 0 chr1 74368811 74368867 -122826565 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1152 494 221 78 78 chr1 74368889 74369056 -122826376 + MTE2a LTR MaLR 200 366 -13 8 1152 239 208 0 70 chr1 74369389 74369446 -122825986 - B1_Mus2 SINE Alu -94 53 1 8 1152 397 259 0 67 chr1 74369677 74369797 -122825635 + MTEb LTR MaLR 1 112 -267 8 1152 1840 211 57 81 chr1 74369858 74370159 -122825273 + RLTR11A LTR ERVK 1 298 -230 8 1152 1304 68 0 63 chr1 74370159 74370364 -122825068 + B2_Mm2 SINE B2 2 193 -2 8 1152 1840 211 57 81 chr1 74370364 74370531 -122824901 + RLTR11A LTR ERVK 299 457 -71 8 1152 243 0 0 0 chr1 74370531 74370558 -122824874 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1152 1840 211 57 81 chr1 74370558 74370629 -122824803 + RLTR11A LTR ERVK 458 527 -1 8 1152 275 281 0 0 chr1 74370630 74370687 -122824745 + B1_Mur4 SINE Alu 16 72 -78 8 1152 252 0 0 0 chr1 74370688 74370716 -122824716 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1152 588 261 80 43 chr1 74370717 74370905 -122824527 + MTEb LTR MaLR 184 378 -1 8 1152 343 282 0 0 chr1 74370926 74371004 -122824428 - ORR1D2 LTR MaLR -8 362 285 8 1152 267 284 31 86 chr1 74371105 74371151 -122824281 - L1MC4a LINE L1 0 7882 7842 8 1152 1040 101 0 20 chr1 74371151 74371302 -122824130 - B1_Mur3 SINE Alu 0 149 2 8 1152 267 284 31 86 chr1 74371302 74371417 -122824015 - L1MC4a LINE L1 -41 7841 7730 8 1152 287 239 134 0 chr1 74371691 74371758 -122823674 - ID4_ SINE ID -6 77 2 8 1152 252 86 0 0 chr1 74371767 74371802 -122823630 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1152 503 210 20 0 chr1 74371802 74371902 -122823530 - PB1D9 SINE Alu -2 118 17 8 1152 808 100 129 15 chr1 74371902 74372034 -122823398 + B1_Mus1 SINE Alu 2 148 0 8 1152 366 80 0 0 chr1 74372035 74372085 -122823347 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1152 201 39 0 0 chr1 74372143 74372169 -122823263 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1152 1104 68 7 0 chr1 74372197 74372343 -122823089 - B1_Mm SINE Alu 0 147 1 8 1152 258 287 9 61 chr1 74372343 74372369 -122823063 - PB1D10 SINE Alu -9 108 9 8 1152 265 273 13 25 chr1 74372369 74372448 -122822984 - ID_B1 SINE B4 -57 167 90 8 1152 1210 196 251 9 chr1 74372868 74373203 -122822229 + MTD LTR MaLR 3 418 -1 8 1152 1259 106 11 0 chr1 74373586 74373775 -122821657 + B2_Mm1a SINE B2 1 191 -2 8 1152 180 125 0 0 chr1 74373917 74373949 -122821483 + (CAAGG)n Simple_repeat Simple_repeat 2 33 0 8 1152 611 99 0 21 chr1 74374152 74374245 -122821187 - B1_Mm SINE Alu -56 91 1 8 1152 396 222 11 22 chr1 74374165 74374257 -122821175 - ID_B1 SINE B4 -64 160 70 8 1152 1132 210 0 5 chr1 74374483 74374689 -122820743 - B3 SINE B2 -10 206 2 8 1152 285 51 0 0 chr1 74374698 74374737 -122820695 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 8 1152 403 240 21 10 chr1 74374737 74374824 -122820608 - PB1D7 SINE Alu -12 108 20 8 1152 513 196 28 18 chr1 74374866 74374975 -122820457 - PB1D10 SINE Alu -1 116 7 8 1152 256 200 57 91 chr1 74375011 74375099 -122820333 + MamRep605 Unknown Unknown 277 361 -515 8 1152 1526 168 100 29 chr1 74375323 74375672 -122819760 - ORR1D1 LTR MaLR 0 374 1 8 1152 465 152 0 37 chr1 74375979 74376061 -122819371 - MTE2b LTR MaLR 0 379 301 8 1152 641 149 0 36 chr1 74376048 74376159 -122819273 - B1_Mur1 SINE Alu 0 149 43 8 1152 1026 227 145 14 chr1 74376173 74376455 -122818977 - MTE2b LTR MaLR -60 319 1 8 1152 190 406 10 10 chr1 74376608 74376710 -122818722 - MIRm SINE MIR -8 268 167 8 1152 188 388 29 15 chr1 74376839 74376975 -122818457 - L2c LINE L2 -297 3090 2953 8 1152 504 117 0 0 chr1 74377199 74377276 -122818156 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 1152 223 356 11 0 chr1 74378176 74378263 -122817169 + MIRc SINE MIR 18 105 -163 8 1152 226 220 186 0 chr1 74378506 74378565 -122816867 - ID4_ SINE ID -11 72 3 8 1152 391 242 50 0 chr1 74378608 74378707 -122816725 - RSINE1 SINE B4 -51 114 11 8 1152 351 0 0 0 chr1 74379443 74379482 -122815950 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1152 382 256 102 55 chr1 74380433 74380561 -122814871 - B1F1 SINE Alu -14 135 2 8 1152 238 306 76 67 chr1 74380561 74380587 -122814845 - MT2B LTR ERVL -436 165 139 8 1152 254 238 79 0 chr1 74380658 74380721 -122814711 - tRNA-Ala-GCA tRNA tRNA -7 68 1 8 1152 362 223 7 35 chr1 74380747 74380891 -122814541 + (TATATG)n Simple_repeat Simple_repeat 6 145 0 8 1152 204 67 0 0 chr1 74380928 74380958 -122814474 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1152 261 235 122 0 chr1 74381269 74381367 -122814065 - PB1D7 SINE Alu -10 110 1 8 1152 912 239 9 18 chr1 74381383 74381600 -122813832 + B3 SINE B2 2 216 0 8 1152 296 319 62 68 chr1 74382157 74382349 -122813083 + MIRb SINE MIR 19 209 -59 8 1152 223 282 23 23 chr1 74382592 74382679 -122812753 + B3A SINE B2 95 181 -17 8 1152 792 172 35 20 chr1 74382679 74382858 -122812574 - B3 SINE B2 -4 191 4 8 1152 795 74 32 8 chr1 74383217 74383340 -122812092 + B1_Mus1 SINE Alu 23 148 0 9 1152 1004 122 0 0 chr1 74383385 74383532 -122811900 + B1_Mus1 SINE Alu 1 147 -1 9 1152 303 346 105 0 chr1 74383848 74383981 -122811451 + L2a LINE L2 3275 3421 -5 9 1152 405 0 0 0 chr1 74385328 74385373 -122810059 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1152 553 171 54 9 chr1 74385620 74385732 -122809700 - PB1D9 SINE Alu -2 118 2 9 1152 230 224 30 0 chr1 74386006 74386073 -122809359 + ID4_ SINE ID 2 70 -13 9 1152 2853 111 2 14 chr1 74387386 74387826 -122807606 + RLTR10C LTR ERVK 1 435 -1 9 1152 424 289 237 0 chr1 74387882 74388055 -122807377 - ID_B1 SINE B4 -9 215 2 9 1152 443 250 0 0 chr1 74388125 74388217 -122807215 - RSINE1 SINE B4 -44 121 30 9 1152 1157 69 0 20 chr1 74388329 74388476 -122806956 - B1_Mus1 SINE Alu 0 148 5 9 1152 1198 115 36 5 chr1 74388518 74388711 -122806721 - MTC LTR MaLR 0 421 223 9 1152 243 321 70 16 chr1 74388830 74389074 -122806358 - L1ME3B LINE L1 -253 5987 5731 9 1152 1235 61 0 0 chr1 74389380 74389528 -122805904 + B1_Mus1 SINE Alu 1 148 0 9 1152 347 314 103 0 chr1 74390524 74390739 -122804693 - L1MC4a LINE L1 -10 7985 7681 9 1152 466 271 8 8 chr1 74390759 74390882 -122804550 - L1MC4a LINE L1 -349 7533 7411 9 1152 423 127 0 0 chr1 74391576 74391639 -122803793 + B2_Mm2 SINE B2 76 138 -57 9 1152 603 51 0 0 chr1 74391650 74391729 -122803703 + (CATA)n Simple_repeat Simple_repeat 2 80 0 9 1152 498 256 58 0 chr1 74392188 74392309 -122803123 + ID_B1 SINE B4 87 214 -10 9 1152 255 308 77 0 chr1 74392397 74392488 -122802944 + PB1D9 SINE Alu 7 104 -16 9 1152 322 161 149 11 chr1 74392506 74392600 -122802832 - MER45B DNA Tip100 -85 955 849 9 1152 326 250 82 75 chr1 74392601 74392748 -122802684 + B1F1 SINE Alu 1 148 -1 9 1152 542 54 0 13 chr1 74392750 74392825 -122802607 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 9 1152 1201 62 0 7 chr1 74392835 74392982 -122802450 + B1_Mus1 SINE Alu 3 148 0 9 1152 270 164 0 0 chr1 74392982 74393037 -122802395 + A-rich Low_complexity Low_complexity 1 55 0 9 1152 376 227 26 13 chr1 74393080 74393156 -122802276 - ID4 SINE ID -5 78 2 9 1152 270 0 0 0 chr1 74393156 74393186 -122802246 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1152 227 252 135 36 chr1 74393243 74393354 -122802078 - MER45B DNA Tip100 -900 140 19 9 1152 180 0 0 0 chr1 74393579 74393599 -122801833 + (CAG)n Simple_repeat Simple_repeat 1 20 0 9 1152 590 298 82 10 chr1 74393627 74393834 -122801598 + ID_B1 SINE B4 2 223 -1 9 1152 1413 90 16 0 chr1 74394634 74394823 -122800609 - B2_Mm2 SINE B2 -3 192 1 9 1152 394 236 274 0 chr1 74394912 74395018 -122800414 - B1_Mur1 SINE Alu -13 136 2 9 1152 324 269 233 23 chr1 74395052 74395185 -122800247 - RSINE1 SINE B4 0 165 5 9 1152 933 60 0 0 chr1 74396886 74397019 -122798413 + (TG)n Simple_repeat Simple_repeat 2 134 0 9 1152 207 139 0 0 chr1 74397720 74397756 -122797676 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1152 226 346 104 15 chr1 74397765 74397900 -122797532 - MIRb SINE MIR -107 161 15 9 1152 180 111 0 0 chr1 74398242 74398269 -122797163 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 9 1152 232 204 0 36 chr1 74398558 74398614 -122796818 + (CCA)n Simple_repeat Simple_repeat 1 54 0 9 1152 879 224 108 90 chr1 74399799 74400255 -122795177 + L2c LINE L2 2922 3385 -2 9 1152 417 54 0 0 chr1 74400590 74400646 -122794786 + (GTCTG)n Simple_repeat Simple_repeat 4 59 0 9 1152 797 64 9 0 chr1 74400650 74400760 -122794672 - B1_Mus1 SINE Alu 0 148 38 9 1152 327 198 81 58 chr1 74400684 74400770 -122794662 - MT2B LTR ERVL -337 264 177 9 1152 228 167 0 0 chr1 74400780 74400828 -122794604 + T-rich Low_complexity Low_complexity 1 48 0 9 1152 1350 93 10 10 chr1 74400845 74401052 -122794380 - L1_Mus3 LINE L1 0 6638 6432 9 1152 822 48 0 0 chr1 74401056 74401159 -122794273 + (TTTTC)n Simple_repeat Simple_repeat 2 104 0 9 1152 1421 99 10 0 chr1 74401309 74401501 -122793931 - B2_Mm2 SINE B2 0 195 2 9 1152 233 326 91 23 chr1 74402098 74402123 -122793309 + MT2B LTR ERVL 54 98 -503 9 1152 274 260 0 40 chr1 74402123 74402199 -122793233 + PB1D10 SINE Alu 42 114 -3 9 1152 228 264 144 86 chr1 74402141 74402208 -122793224 + B4 SINE B4 39 159 -133 9 1152 233 326 91 23 chr1 74402199 74402274 -122793158 + MT2B LTR ERVL 99 241 -360 9 1152 337 176 149 0 chr1 74402208 74402282 -122793150 + PB1D10 SINE Alu 7 91 -26 9 1152 228 264 144 86 chr1 74402282 74402315 -122793117 + B4 SINE B4 160 222 -70 9 1152 432 0 0 0 chr1 74402344 74402392 -122793040 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1152 407 279 152 27 chr1 74402395 74402579 -122792853 - MLT1K LTR MaLR -172 423 217 9 1152 206 219 0 0 chr1 74402912 74402953 -122792479 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1152 318 212 9 0 chr1 74403036 74403117 -122792315 + B1F1 SINE Alu 34 149 0 9 1152 1038 141 0 0 chr1 74403125 74403274 -122792158 + B1_Mur3 SINE Alu 1 149 0 9 1152 840 245 54 28 chr1 74403312 74403663 -122791769 - MYSERV16_I-int LTR ERVK -2107 219 5 9 1152 1439 69 21 16 chr1 74403960 74404151 -122791281 + B2_Mm1a SINE B2 2 193 0 9 1152 615 166 140 22 chr1 74404520 74404656 -122790776 - RLTR20A2 LTR ERVK -426 152 1 9 1152 588 200 9 0 chr1 74404658 74404768 -122790664 + B1_Mur1 SINE Alu 26 136 -13 9 1152 274 43 0 60 chr1 74404768 74404818 -122790614 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 9 1152 287 322 144 0 chr1 74404818 74404964 -122790468 + MIR SINE MIR 28 194 -68 9 1152 725 213 164 0 chr1 74405188 74405371 -122790061 + B3 SINE B2 4 216 0 9 1152 210 279 0 0 chr1 74405388 74405431 -122790001 - B1F2 SINE Alu -102 47 5 9 1152 484 366 6 17 chr1 74405586 74405761 -122789671 + ID_B1 SINE B4 49 221 -3 9 1152 239 213 21 0 chr1 74405767 74405814 -122789618 + B1F1 SINE Alu 13 60 -89 9 1152 217 132 0 0 chr1 74405865 74405903 -122789529 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1152 325 280 261 8 chr1 74405903 74406022 -122789410 - B1_Mur2 SINE Alu 0 149 1 9 1152 1194 62 7 0 chr1 74406052 74406198 -122789234 + B1_Mus1 SINE Alu 1 147 -1 9 1152 370 230 212 0 chr1 74406277 74406390 -122789042 + RSINE1 SINE B4 4 140 -25 9 1152 917 161 14 0 chr1 74406783 74406926 -122788506 - B1_Mur4 SINE Alu -5 145 1 9 1152 572 257 21 7 chr1 74406929 74407070 -122788362 - ID_B1 SINE B4 0 224 82 9 1152 349 279 71 9 chr1 74407077 74407189 -122788243 + MIR SINE MIR 22 140 -122 9 1152 418 279 29 0 chr1 74407227 74407331 -122788101 + PB1D10 SINE Alu 1 107 -10 9 1152 813 209 17 34 chr1 74407316 74407494 -122787938 + ID_B1 SINE B4 50 224 0 9 1152 1408 75 32 0 chr1 74407497 74407683 -122787749 + B2_Mm1t SINE B2 1 192 -1 9 1152 927 17 0 8 chr1 74407685 74407805 -122787627 + B1_Mus1 SINE Alu 30 148 0 9 1152 222 240 0 0 chr1 74407805 74407855 -122787577 + A-rich Low_complexity Low_complexity 1 50 0 9 1152 284 290 32 0 chr1 74408017 74408110 -122787322 - Tigger5 DNA MER2_type -2309 97 2 9 1152 540 0 0 0 chr1 74408251 74408311 -122787121 + (TTA)n Simple_repeat Simple_repeat 3 62 0 9 1152 1053 210 35 0 chr1 74408311 74408511 -122786921 - B3 SINE B2 -9 207 1 9 1152 285 75 0 0 chr1 74408972 74409012 -122786420 + (CAG)n Simple_repeat Simple_repeat 1 40 0 9 1152 191 174 0 42 chr1 74409639 74409687 -122785745 + G-rich Low_complexity Low_complexity 2 47 0 9 1152 346 262 112 60 chr1 74410415 74410549 -122784883 - ID_B1 SINE B4 -2 222 82 9 1152 203 138 0 0 chr1 74410572 74410601 -122784831 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 9 1152 474 310 14 21 chr1 74410656 74410677 -122784755 + ID_B1 SINE B4 80 223 -1 9 1152 611 226 40 0 chr1 74410677 74410801 -122784631 + B1F SINE Alu 20 148 -1 9 1152 290 234 284 0 chr1 74411623 74411763 -122783669 + B4 SINE B4 47 226 -66 9 1152 565 235 17 0 chr1 74411763 74411882 -122783550 + B3A SINE B2 1 121 -77 9 1152 299 191 11 56 chr1 74411882 74411900 -122783532 + (CATATA)n Simple_repeat Simple_repeat 4 21 0 9 1152 726 8 0 115 chr1 74411900 74412304 -122783128 + (CACAT)n Simple_repeat Simple_repeat 1 357 0 9 1152 299 191 11 56 chr1 74412304 74412369 -122783063 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 9 1152 280 0 0 26 chr1 74412370 74412408 -122783024 + U2 snRNA snRNA 3 39 -149 9 1152 904 149 0 0 chr1 74412587 74412721 -122782711 - B1_Mur4 SINE Alu -14 136 3 9 1152 360 264 11 0 chr1 74412813 74412900 -122782532 - B4 SINE B4 -9 283 196 9 1152 222 118 0 0 chr1 74413499 74413533 -122781899 + (GAA)n Simple_repeat Simple_repeat 2 35 0 9 1152 380 191 44 0 chr1 74413534 74413602 -122781830 - PB1D7 SINE Alu -32 88 18 9 1152 338 278 51 10 chr1 74413759 74413857 -122781575 + PB1D7 SINE Alu 11 112 -8 9 1152 601 268 0 100 chr1 74413876 74414046 -122781386 + RSINE1 SINE B4 13 165 0 9 1152 438 211 0 0 chr1 74415172 74415281 -122780151 + GA-rich Low_complexity Low_complexity 1 109 0 9 1152 417 327 31 25 chr1 74415373 74415536 -122779896 - HAL1-2a_MD LINE L1 -516 2508 2345 9 1152 507 250 0 43 chr1 74415895 74416012 -122779420 + PB1D7 SINE Alu 2 113 -7 9 1152 214 51 24 49 chr1 74416044 74416057 -122779375 + (GGA)n Simple_repeat Simple_repeat 2 13 0 9 1152 1338 103 32 0 chr1 74416057 74416242 -122779190 + B2_Mm1t SINE B2 2 192 -1 9 1152 214 51 24 49 chr1 74416242 74416269 -122779163 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 1152 291 267 123 47 chr1 74416278 74416384 -122779048 + ID_B1 SINE B4 95 208 -16 1 1152 321 26 0 0 chr1 74416579 74416617 -122778815 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1152 561 161 232 0 chr1 74417029 74417141 -122778291 + B1_Mur4 SINE Alu 1 138 -12 1 1152 428 0 19 0 chr1 74417146 74417198 -122778234 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1152 29 28 0 0 chr1 74417442 74417478 -122777954 + AT_rich Low_complexity Low_complexity 1 36 0 1 1152 616 265 17 100 chr1 74417557 74417653 -122777779 + B4 SINE B4 1 76 -216 1 1152 631 227 20 41 chr1 74417653 74417800 -122777632 + B1_Mus2 SINE Alu 3 146 -1 1 1152 235 209 0 0 chr1 74418119 74418162 -122777270 - PB1D7 SINE Alu -68 52 10 1 1152 210 227 45 0 chr1 74418244 74418288 -122777144 - ID SINE ID -144 80 35 1 1152 213 197 0 38 chr1 74418439 74418518 -122776914 + T-rich Low_complexity Low_complexity 1 76 0 1 1152 995 68 0 0 chr1 74418518 74418651 -122776781 - B1_Mus1 SINE Alu 0 148 16 1 1152 338 230 375 22 chr1 74418711 74418870 -122776562 + B3 SINE B2 2 216 0 1 1152 363 235 12 0 chr1 74418899 74418980 -122776452 + PB1D10 SINE Alu 1 82 -35 1 1152 306 0 0 0 chr1 74419006 74419040 -122776392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1152 452 275 132 13 chr1 74419043 74419194 -122776238 - B3A SINE B2 -28 170 2 1 1152 241 131 16 16 chr1 74419206 74419268 -122776164 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1 1152 211 127 291 0 chr1 74419367 74419422 -122776010 - ID SINE ID -151 73 3 1 1152 312 289 105 24 chr1 74419427 74419551 -122775881 - MLT1A1 LTR MaLR -271 137 4 1 1152 451 276 8 33 chr1 74419639 74419759 -122775673 - B1F SINE Alu -28 121 5 1 1152 532 320 34 0 chr1 74419764 74419970 -122775462 - L1MB4 LINE L1 -308 5872 5660 1 1152 320 315 67 14 chr1 74420070 74420277 -122775155 - L1MD1 LINE L1 -216 6143 5922 1 1152 1305 77 37 47 chr1 74420277 74420467 -122774965 + B2_Mm2 SINE B2 2 189 -6 1 1152 308 287 0 22 chr1 74420489 74420578 -122774854 + B4A SINE B4 4 90 -202 1 1152 274 240 38 94 chr1 74420578 74420595 -122774837 + B3A SINE B2 4 103 -95 1 1152 500 45 0 15 chr1 74420647 74420715 -122774717 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1152 372 252 61 0 chr1 74420723 74420822 -122774610 + PB1D10 SINE Alu 13 117 0 1 1152 260 283 0 0 chr1 74420820 74420873 -122774559 + ID4 SINE ID 2 54 -29 1 1152 608 232 14 0 chr1 74421132 74421270 -122774162 - L1M5 LINE L1 -406 5773 5634 1 1152 561 30 0 0 chr1 74421424 74421491 -122773941 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1152 382 287 32 0 chr1 74422787 74422881 -122772551 - RSINE1 SINE B4 -1 164 68 1 1152 1699 27 0 0 chr1 74424080 74424268 -122771164 + B2_Mm1a SINE B2 2 189 -4 1 1152 300 143 335 27 chr1 74424268 74424414 -122771018 - B2_Mm2 SINE B2 -11 182 4 1 1152 860 92 76 3 chr1 74424414 74424542 -122770890 - B2_Mm2 SINE B2 -55 138 2 1 1152 558 0 0 0 chr1 74424922 74424984 -122770448 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1152 183 42 0 0 chr1 74424984 74425008 -122770424 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 1 1152 23 0 0 0 chr1 74425105 74425128 -122770304 + AT_rich Low_complexity Low_complexity 1 23 0 1 1152 1282 116 11 5 chr1 74425134 74425325 -122770107 + B2_Mm2 SINE B2 3 194 -1 1 1152 570 239 0 25 chr1 74425342 74425462 -122769970 + PB1D9 SINE Alu 3 119 -1 1 1152 678 171 32 0 chr1 74425468 74425591 -122769841 + B1_Mus1 SINE Alu 1 127 -21 1 1152 216 0 0 0 chr1 74425621 74425645 -122769787 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1152 266 289 83 37 chr1 74425832 74425940 -122769492 - PB1D10 SINE Alu -1 116 4 1 1152 991 128 0 20 chr1 74426056 74426208 -122769224 - B1_Mur4 SINE Alu 0 150 2 1 1152 392 294 112 22 chr1 74426890 74427098 -122768334 + MIRb SINE MIR 42 262 -6 1 1152 839 37 9 0 chr1 74427583 74427690 -122767742 + (GGGA)n Simple_repeat Simple_repeat 3 110 0 1 1152 242 242 16 0 chr1 74427964 74428026 -122767406 - L2b LINE L2 -311 3064 3002 1 1152 962 162 5 5 chr1 74429078 74429295 -122766137 + CT-rich Low_complexity Low_complexity 1 217 0 1 1152 719 147 145 15 chr1 74429295 74429426 -122766006 - B1_Mur4 SINE Alu 0 150 3 1 1152 258 222 0 0 chr1 74429614 74429668 -122765764 + PB1D9 SINE Alu 1 54 -66 1 1152 857 154 0 27 chr1 74429764 74429911 -122765521 - B1_Mur4 SINE Alu -2 148 6 1 1152 1057 38 61 0 chr1 74431016 74431147 -122764285 - B1_Mus1 SINE Alu -9 139 1 1 1152 310 320 107 0 chr1 74431387 74431537 -122763895 - MIR SINE MIR -81 181 16 1 1152 459 245 18 26 chr1 74432250 74432363 -122763069 + B3 SINE B2 1 112 -104 1 1152 1344 57 51 6 chr1 74432458 74432636 -122762796 + B2_Mm2 SINE B2 5 190 -5 1 1152 1230 56 0 0 chr1 74432677 74432821 -122762611 + B1_Mus1 SINE Alu 1 144 -4 1 1152 292 146 0 0 chr1 74432851 74432899 -122762533 + ID_B1 SINE B4 174 221 -3 1 1152 657 36 0 0 chr1 74432920 74433004 -122762428 + (GGA)n Simple_repeat Simple_repeat 1 84 0 1 1152 26 30 0 0 chr1 74434037 74434070 -122761362 + AT_rich Low_complexity Low_complexity 1 33 0 1 1152 1114 59 0 0 chr1 74434221 74434357 -122761075 + B1_Mus2 SINE Alu 2 137 -10 1 1152 342 291 35 85 chr1 74434544 74434743 -122760689 + B3A SINE B2 4 192 -6 1 1152 514 227 29 29 chr1 74434750 74434886 -122760546 + B1_Mur1 SINE Alu 6 141 -8 1 1152 361 285 206 8 chr1 74434926 74435057 -122760375 + RSINE1 SINE B4 3 159 -6 1 1152 664 113 0 54 chr1 74435085 74435197 -122760235 - B1_Mus2 SINE Alu -15 132 27 1 1152 233 240 8 161 chr1 74435105 74435229 -122760203 - MT2B2 LTR ERVL -320 264 160 1 1152 1039 70 108 0 chr1 74435568 74435726 -122759706 + B2_Mm2 SINE B2 1 175 -20 1 1152 188 0 74 0 chr1 74435817 74435844 -122759588 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1152 22 0 0 0 chr1 74436632 74436654 -122758778 + AT_rich Low_complexity Low_complexity 1 22 0 1 1152 203 309 84 69 chr1 74436911 74437113 -122758319 - L2b LINE L2 -214 3161 2957 1 1152 548 240 89 22 chr1 74437199 74437378 -122758054 + B3A SINE B2 2 192 -6 1 1152 356 254 45 76 chr1 74437488 74437620 -122757812 + RSINE1 SINE B4 3 130 -35 1 1152 531 214 157 68 chr1 74437644 74437835 -122757597 + B3 SINE B2 1 208 -8 1 1152 200 277 0 96 chr1 74438293 74438397 -122757035 + C-rich Low_complexity Low_complexity 1 94 0 1 1152 23 54 0 0 chr1 74438401 74438438 -122756994 + GC_rich Low_complexity Low_complexity 1 37 0 1 1152 21 71 0 0 chr1 74438605 74438647 -122756785 + GC_rich Low_complexity Low_complexity 1 42 0 1 1152 199 235 39 0 chr1 74443063 74443114 -122752318 - L2a LINE L2 -5 3421 3369 1 1152 572 209 0 9 chr1 74443700 74443806 -122751626 + RSINE1 SINE B4 52 156 -9 1 1152 180 0 0 0 chr1 74443880 74443900 -122751532 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 1 1152 279 0 0 0 chr1 74444383 74444414 -122751018 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1152 1006 186 71 0 chr1 74444841 74445024 -122750408 + B3 SINE B2 1 196 -20 1 1152 1176 68 0 0 chr1 74445121 74445267 -122750165 - B1_Mm SINE Alu 0 147 2 1 1152 258 304 25 0 chr1 74445569 74445648 -122749784 + ID4 SINE ID 3 83 0 1 1152 290 314 10 0 chr1 74445761 74445862 -122749570 - ID4 SINE ID -35 117 17 1 1152 214 150 317 0 chr1 74446022 74446082 -122749350 - PB1D10 SINE Alu -6 111 33 1 1152 556 211 70 0 chr1 74446191 74446305 -122749127 + B3A SINE B2 5 126 -72 1 1152 246 307 35 99 chr1 74446380 74446419 -122749013 + B1F1 SINE Alu 16 54 -95 1 1152 1159 146 11 0 chr1 74446419 74446597 -122748835 + B2_Mm1t SINE B2 1 180 -13 1 1152 723 116 0 0 chr1 74446597 74446709 -122748723 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1152 1318 106 11 0 chr1 74446718 74446907 -122748525 + B2_Mm1t SINE B2 1 191 -2 1 1152 246 307 35 99 chr1 74446907 74446997 -122748435 + B1F1 SINE Alu 62 146 -3 1 1152 23 33 0 0 chr1 74447230 74447260 -122748172 + AT_rich Low_complexity Low_complexity 1 30 0 1 1152 201 39 0 0 chr1 74447514 74447540 -122747892 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1152 564 254 7 44 chr1 74447540 74447668 -122747764 - ID_B1 SINE B4 -13 211 86 1 1152 597 211 0 18 chr1 74448215 74448326 -122747106 - B1_Mus1 SINE Alu -2 146 38 1 1152 234 211 194 14 chr1 74448274 74448346 -122747086 - 4.5SRNA scRNA scRNA -9 85 1 1 1152 246 33 0 0 chr1 74448390 74448420 -122747012 - PB1D9 SINE Alu -90 30 1 1 1152 582 132 48 24 chr1 74448455 74448553 -122746879 - Lx LINE L1 -7 6647 6548 1 1152 541 277 0 34 chr1 74448553 74448699 -122746733 - B1F1 SINE Alu -6 143 3 1 1152 582 132 48 24 chr1 74448699 74448724 -122746708 - Lx LINE L1 -107 6547 6521 1 1153 783 180 130 91 chr1 74449268 74449319 -122746113 - B3 SINE B2 0 216 170 1 1153 1234 61 0 0 chr1 74449319 74449467 -122745965 - B1_Mus1 SINE Alu 0 148 1 1 1153 783 180 130 91 chr1 74449467 74449623 -122745809 - B3 SINE B2 -47 169 1 1 1153 21 0 0 0 chr1 74449631 74449652 -122745780 + AT_rich Low_complexity Low_complexity 1 21 0 1 1153 539 287 62 14 chr1 74449658 74449803 -122745629 - RSINE1 SINE B4 -13 152 1 1 1153 386 222 0 24 chr1 74449817 74449900 -122745532 - B1F1 SINE Alu 0 149 69 1 1153 1067 208 30 0 chr1 74449926 74450123 -122745309 - B3 SINE B2 -12 204 2 1 1153 263 242 0 29 chr1 74450256 74450324 -122745108 - ID_B1 SINE B4 -69 155 90 1 1153 194 81 27 0 chr1 74450597 74450634 -122744798 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1153 1208 68 0 0 chr1 74450636 74450782 -122744650 - B1_Mus1 SINE Alu -1 147 2 1 1153 267 103 0 0 chr1 74450789 74450828 -122744604 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1153 228 135 0 0 chr1 74450837 74450874 -122744558 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 1 1153 345 236 100 11 chr1 74451053 74451143 -122744289 - PB1 SINE Alu -8 119 22 1 1153 486 236 18 0 chr1 74451305 74451415 -122744017 + MER5A1 DNA MER1_type 26 137 -29 1 1153 1143 55 0 33 chr1 74451512 74451650 -122743782 + B1_Mm SINE Alu 1 135 -12 1 1153 207 0 0 0 chr1 74451650 74451673 -122743759 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1153 1143 55 0 33 chr1 74451673 74451685 -122743747 + B1_Mm SINE Alu 136 146 -1 1 1153 748 214 0 22 chr1 74451762 74451896 -122743536 - ID_B1 SINE B4 -11 213 83 1 1153 244 235 99 42 chr1 74451945 74452016 -122743416 + PB1D7 SINE Alu 44 118 -2 1 1153 317 260 65 0 chr1 74452057 74452134 -122743298 + ID SINE ID 1 82 -142 1 1153 1223 61 0 0 chr1 74452146 74452293 -122743139 + B1_Mus1 SINE Alu 2 148 0 1 1153 288 77 0 0 chr1 74452316 74452355 -122743077 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 1 1153 1047 112 0 0 chr1 74452355 74452525 -122742907 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 1 1153 622 176 0 0 chr1 74452543 74452645 -122742787 + ID_B1 SINE B4 104 205 -19 1 1153 207 0 0 0 chr1 74452645 74452668 -122742764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1153 366 218 88 95 chr1 74452682 74452819 -122742613 + MT2B LTR ERVL 143 278 -323 1 1153 959 160 0 0 chr1 74452701 74452845 -122742587 + B1_Mur4 SINE Alu 6 149 -1 1 1153 300 304 0 12 chr1 74453364 74453444 -122741988 - ID SINE ID -142 82 4 1 1153 502 286 68 29 chr1 74453465 74453670 -122741762 - B3 SINE B2 -2 214 2 1 1153 421 245 20 0 chr1 74453707 74453809 -122741623 + PB1D10 SINE Alu 1 104 -13 1 1153 756 206 188 32 chr1 74453811 74453997 -122741435 - B3 SINE B2 0 216 2 1 1153 1232 166 19 5 chr1 74454375 74454581 -122740851 + B3 SINE B2 2 210 -6 1 1153 1282 96 0 60 chr1 74454673 74454873 -122740559 + B2_Mm2 SINE B2 1 188 -7 1 1153 447 106 0 0 chr1 74455070 74455136 -122740296 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1153 583 198 0 0 chr1 74457009 74457105 -122738327 + PB1D7 SINE Alu 24 119 -1 1 1153 1191 75 0 0 chr1 74457109 74457256 -122738176 + B1_Mus1 SINE Alu 1 147 -1 1 1153 270 0 0 0 chr1 74457256 74457286 -122738146 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1153 540 30 0 0 chr1 74458278 74458344 -122737088 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1153 376 284 9 52 chr1 74458851 74458966 -122736466 + MER5B DNA MER1_type 51 160 -18 1 1153 456 175 0 0 chr1 74459102 74459199 -122736233 + (TCCA)n Simple_repeat Simple_repeat 1 97 0 1 1153 207 200 0 0 chr1 74459201 74459236 -122736196 + polypyrimidine Low_complexity Low_complexity 3 37 0 1 1153 620 274 25 13 chr1 74459324 74459483 -122735949 - RSINE1 SINE B4 0 165 5 1 1153 725 206 21 0 chr1 74459489 74459630 -122735802 - ID_B1 SINE B4 -5 219 76 1 1153 689 171 30 30 chr1 74459668 74459801 -122735631 + B1_Mm SINE Alu 1 133 -14 1 1153 216 0 0 0 chr1 74459802 74459826 -122735606 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1153 645 80 0 0 chr1 74459941 74460029 -122735403 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 1 1153 213 39 0 0 chr1 74460116 74460142 -122735290 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1 1153 342 243 0 0 chr1 74460148 74460222 -122735210 - ID4 SINE ID -9 74 1 1 1153 406 230 104 91 chr1 74460336 74460566 -122734866 - L1MB7 LINE L1 -200 5974 5742 1 1153 388 127 13 101 chr1 74460586 74460665 -122734767 - B1_Mur4 SINE Alu 0 150 79 1 1153 202 200 0 0 chr1 74460755 74460790 -122734642 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1153 266 309 29 0 chr1 74460805 74460873 -122734559 - B4 SINE B4 -4 288 219 1 1153 310 274 32 0 chr1 74460932 74461027 -122734405 - RSINE1 SINE B4 -67 98 1 1 1153 604 298 12 5 chr1 74461034 74461218 -122734214 - B4 SINE B4 -61 231 49 1 1153 228 125 0 0 chr1 74461289 74461321 -122734111 + ID_B1 SINE B4 186 217 -7 1 1153 253 227 48 48 chr1 74461321 74461422 -122734010 + PB1D10 SINE Alu 21 120 -7 1 1153 247 200 121 15 chr1 74462168 74462234 -122733198 - ID SINE ID -138 86 14 1 1153 570 306 82 5 chr1 74462327 74462511 -122732921 - 7SLRNA srpRNA srpRNA -113 201 4 1 1153 198 103 0 0 chr1 74462890 74462919 -122732513 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1153 419 265 119 15 chr1 74462922 74463056 -122732376 - RSINE1 SINE B4 -17 148 1 1 1153 1257 41 0 0 chr1 74463175 74463322 -122732110 - B1_Mm SINE Alu 0 147 1 1 1153 1182 70 0 0 chr1 74463477 74463619 -122731813 + B1_Mus2 SINE Alu 1 142 -5 1 1153 207 0 0 0 chr1 74463624 74463647 -122731785 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1153 528 195 102 42 chr1 74463687 74463805 -122731627 + B3A SINE B2 1 125 -73 1 1153 843 131 0 0 chr1 74463811 74463948 -122731484 + (TA)n Simple_repeat Simple_repeat 1 137 0 1 1153 375 242 168 39 chr1 74463960 74464115 -122731317 + MER2 DNA MER2_type 96 270 -75 1 1153 432 357 50 10 chr1 74464072 74464270 -122731162 + ID_B1 SINE B4 8 213 -11 1 1153 423 0 0 0 chr1 74464270 74464317 -122731115 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1153 275 266 88 44 chr1 74464369 74464483 -122730949 + RSINE1 SINE B4 46 164 -1 1 1153 303 254 248 26 chr1 74464528 74464641 -122730791 + MER2 DNA MER2_type 208 345 0 1 1153 1196 140 130 0 chr1 74468470 74468670 -122726762 - URR1A DNA MER1_type 0 226 1 1 1153 180 0 0 0 chr1 74468674 74468694 -122726738 + (CAG)n Simple_repeat Simple_repeat 2 21 0 1 1153 1272 84 96 0 chr1 74468706 74468884 -122726548 + B2_Mm2 SINE B2 1 195 0 1 1153 201 129 0 0 chr1 74468885 74468916 -122726516 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 1 1153 341 300 8 40 chr1 74470078 74470203 -122725229 + MIR SINE MIR 64 184 -78 1 1153 1102 221 9 0 chr1 74471337 74471554 -122723878 + ID_B1 SINE B4 3 221 -3 1 1153 429 270 70 16 chr1 74471586 74471714 -122723718 + B1_Mur2 SINE Alu 14 148 -1 1 1153 479 248 72 7 chr1 74471732 74471870 -122723562 + RSINE1 SINE B4 2 148 -17 1 1153 663 143 20 0 chr1 74471875 74471973 -122723459 - B1_Mur3 SINE Alu -49 100 1 1 1153 183 315 19 0 chr1 74472971 74473025 -122722407 - L2 LINE L2 -557 2862 2808 1 1153 534 241 103 0 chr1 74475050 74475166 -122720266 + ID_B1 SINE B4 84 211 -13 1 1153 756 119 108 31 chr1 74475172 74475302 -122720130 - B1_Mur4 SINE Alu -2 148 9 1 1153 262 153 102 20 chr1 74475259 74475316 -122720116 - MT2B LTR ERVL -273 311 250 1 1153 359 253 38 20 chr1 74475370 74475483 -122719949 + B1F2 SINE Alu 9 117 0 1 1153 354 23 0 0 chr1 74476129 74476172 -122719260 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1153 516 344 15 63 chr1 74476181 74476451 -122718981 - B4A SINE B4 -21 271 15 1 1153 217 288 0 59 chr1 74476379 74476464 -122718968 - ID4_ SINE ID -2 81 2 1 1153 1150 62 0 14 chr1 74476959 74477107 -122718325 - B1_Mus1 SINE Alu 0 148 3 1 1153 1237 61 0 0 chr1 74477421 74477569 -122717863 - B1_Mus1 SINE Alu 0 148 1 1 1153 207 0 0 0 chr1 74477731 74477754 -122717678 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1153 483 290 140 19 chr1 74477836 74478093 -122717339 - B4A SINE B4 -4 288 1 1 1153 422 256 37 31 chr1 74479213 74479329 -122716103 - B1_Mur4 SINE Alu -5 144 25 1 1153 660 190 81 60 chr1 74479329 74479367 -122716065 - B2_Mm1a SINE B2 -2 191 146 1 1153 864 219 47 16 chr1 74479367 74479557 -122715875 - B3 SINE B2 -19 197 2 1 1153 855 80 61 14 chr1 74479557 74479703 -122715729 - B2_Mm2 SINE B2 -48 145 3 1 1153 21 0 0 0 chr1 74479707 74479728 -122715704 + AT_rich Low_complexity Low_complexity 1 21 0 1 1153 1249 20 7 7 chr1 74480382 74480530 -122714902 + B1_Mus1 SINE Alu 1 148 0 1 1153 254 227 48 58 chr1 74480646 74480749 -122714683 - PB1D10 SINE Alu -10 107 6 1 1153 274 266 38 12 chr1 74480691 74480771 -122714661 - ID_B1 SINE B4 -80 144 63 1 1153 233 282 111 14 chr1 74480768 74480840 -122714592 - B3 SINE B2 -9 207 129 1 1153 707 246 0 7 chr1 74480900 74481035 -122714397 + B1_Mur4 SINE Alu 10 143 -7 1 1153 302 309 37 9 chr1 74481063 74481171 -122714261 + ID_B1 SINE B4 54 164 -60 1 1153 205 219 15 15 chr1 74482119 74482184 -122713248 + A-rich Low_complexity Low_complexity 2 66 0 1 1153 25 0 0 0 chr1 74484145 74484170 -122711262 + AT_rich Low_complexity Low_complexity 1 25 0 1 1153 252 59 0 0 chr1 74485468 74485502 -122709930 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1153 233 57 0 28 chr1 74486797 74486833 -122708599 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1153 1152 75 0 0 chr1 74486833 74486979 -122708453 - B1_Mus2 SINE Alu 0 147 2 1 1153 270 56 0 0 chr1 74487149 74487185 -122708247 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1153 711 279 66 62 chr1 74487280 74487524 -122707908 - B4A SINE B4 -43 249 5 1 1153 862 139 58 0 chr1 74487634 74487771 -122707661 + B1_Mus1 SINE Alu 1 145 -3 1 1153 275 354 100 10 chr1 74487795 74487895 -122707537 - PB1D10 SINE Alu 0 117 9 1 1153 549 307 38 45 chr1 74487829 74487986 -122707446 - ID_B1 SINE B4 -68 156 1 1 1153 590 236 26 82 chr1 74488386 74488580 -122706852 + B3A SINE B2 1 183 -15 1 1153 210 37 0 0 chr1 74488875 74488902 -122706530 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1153 505 156 21 129 chr1 74488970 74489110 -122706322 + MT2B LTR ERVL 152 276 -325 1 1153 927 140 0 27 chr1 74488990 74489137 -122706295 + B1_Mus1 SINE Alu 6 148 0 1 1153 305 273 115 48 chr1 74489285 74489389 -122706043 + PB1D10 SINE Alu 7 117 0 1 1153 372 333 146 0 chr1 74489493 74489685 -122705747 + ID_B1 SINE B4 3 222 -2 1 1153 988 158 15 45 chr1 74489688 74489887 -122705545 + B2_Mm2 SINE B2 1 193 -2 1 1153 423 297 0 35 chr1 74489935 74490050 -122705382 - PB1D7 SINE Alu -8 112 2 1 1153 1253 41 0 0 chr1 74490235 74490381 -122705051 + B1_Mm SINE Alu 2 147 0 1 1153 334 336 59 55 chr1 74490381 74490431 -122705001 + L1MEf LINE L1 1921 1971 -4229 1 1153 747 168 130 0 chr1 74490431 74490562 -122704870 + B1_Mur3 SINE Alu 2 149 0 1 1153 334 336 59 55 chr1 74490562 74490731 -122704701 + L1MEf LINE L1 1972 2140 -4060 1 1153 256 337 42 0 chr1 74491190 74491285 -122704147 + PB1D7 SINE Alu 10 108 -12 1 1153 227 0 91 0 chr1 74491285 74491318 -122704114 + (CAAAC)n Simple_repeat Simple_repeat 3 38 0 1 1153 308 302 45 23 chr1 74491344 74491432 -122704000 + L1MEf LINE L1 1998 2087 -4113 1 1153 524 217 0 28 chr1 74491570 74491679 -122703753 - B3 SINE B2 -109 107 2 1 1153 1997 259 136 4 chr1 74491786 74492343 -122703089 + Lx8 LINE L1 6506 7136 -337 1 1153 1235 203 166 25 chr1 74492361 74492680 -122702752 + ORR1D1 LTR MaLR 2 365 -9 1 1153 826 281 80 37 chr1 74492691 74492990 -122702442 + Lx8 LINE L1 7158 7469 -4 1 1153 399 256 12 0 chr1 74493013 74493095 -122702337 - B4A SINE B4 -181 111 29 1 1153 722 199 175 0 chr1 74493139 74493310 -122702122 + B3 SINE B2 1 201 -15 1 1153 260 292 65 33 chr1 74493474 74493566 -122701866 + MT2B LTR ERVL 163 257 -344 1 1153 670 192 62 23 chr1 74493486 74493614 -122701818 + B1_Mur1 SINE Alu 17 149 0 1 1153 1241 48 0 0 chr1 74493654 74493801 -122701631 - B1_Mm SINE Alu 0 147 1 1 1153 21 0 0 0 chr1 74493806 74493827 -122701605 + AT_rich Low_complexity Low_complexity 1 21 0 1 1153 207 176 0 86 chr1 74493963 74494044 -122701388 + A-rich Low_complexity Low_complexity 5 78 0 1 1153 271 235 174 12 chr1 74494347 74494433 -122700999 + PB1D10 SINE Alu 12 111 -6 1 1153 1097 92 0 0 chr1 74494442 74494584 -122700848 + B1_Mus1 SINE Alu 2 143 -5 1 1153 355 298 84 41 chr1 74494619 74494986 -122700446 + HAL1 LINE L1 782 1164 -1343 1 1153 257 225 221 18 chr1 74495378 74495491 -122699941 + HAL1 LINE L1 1569 1704 -803 1 1153 500 283 6 68 chr1 74495512 74495533 -122699899 + ID_B1 SINE B4 65 217 -7 1 1153 794 213 7 7 chr1 74495533 74495675 -122699757 + B1_Mur1 SINE Alu 1 142 -7 1 1153 186 43 0 0 chr1 74495676 74495699 -122699733 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1153 1432 75 21 0 chr1 74496090 74496277 -122699155 - B2_Mm2 SINE B2 -3 192 2 1 1153 478 274 67 184 chr1 74496305 74496587 -122698845 - B4A SINE B4 -43 249 1 1 1153 392 268 196 32 chr1 74496809 74496998 -122698434 + ID_B1 SINE B4 2 221 -3 1 1153 27 0 0 0 chr1 74497352 74497379 -122698053 + AT_rich Low_complexity Low_complexity 1 27 0 1 1153 803 121 121 0 chr1 74497391 74497531 -122697901 + B2_Mm2 SINE B2 4 160 -35 1 1153 982 136 0 13 chr1 74497915 74498064 -122697368 + B1_Mus1 SINE Alu 2 148 0 1 1153 1193 74 0 0 chr1 74498094 74498242 -122697190 + B1_Mus1 SINE Alu 1 148 0 1 1153 227 239 170 0 chr1 74498277 74498345 -122697087 + B4 SINE B4 3 82 -210 1 1153 505 268 20 147 chr1 74498429 74498626 -122696806 + MER5B DNA MER1_type 7 178 0 1 1153 703 218 14 0 chr1 74498630 74498777 -122696655 + B1_Mur4 SINE Alu 2 150 0 1 1153 545 247 146 6 chr1 74499534 74499705 -122695727 - ID_B1 SINE B4 -17 207 13 1 1153 476 261 36 0 chr1 74500837 74500948 -122694484 - ID_B1 SINE B4 -104 120 6 1 1153 607 259 0 0 chr1 74501049 74501165 -122694267 + PB1D7 SINE Alu 1 116 -4 2 1153 474 211 126 0 chr1 74501270 74501365 -122694067 - B1_Mur1 SINE Alu -14 135 29 3 1153 3602 62 7 2 chr1 74501518 74501973 -122693459 + L1_Mus1 LINE L1 6111 6567 0 4 1153 285 221 12 94 chr1 74502259 74502344 -122693088 - ID4_ SINE ID -1 82 5 5 1153 255 260 135 0 chr1 74502374 74502470 -122692962 - PB1D10 SINE Alu -6 111 3 6 1153 213 119 0 0 chr1 74502806 74502848 -122692584 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1153 1317 83 0 37 chr1 74502969 74503157 -122692275 - B2_Mm2 SINE B2 -14 181 1 8 1153 714 205 15 30 chr1 74503359 74503490 -122691942 - B1_Mur2 SINE Alu -20 129 1 9 1153 289 261 31 0 chr1 74503890 74503955 -122691477 + PB1 SINE Alu 61 127 0 1 1153 428 231 54 172 chr1 74504013 74504217 -122691215 - B3A SINE B2 -18 180 1 1 1153 802 164 29 0 chr1 74504283 74504423 -122691009 + B1_Mus2 SINE Alu 2 145 -2 1 1153 231 260 0 0 chr1 74504423 74504473 -122690959 + G-rich Low_complexity Low_complexity 4 53 0 1 1153 371 256 113 30 chr1 74504491 74504624 -122690808 + Tigger15a DNA TcMar 572 715 0 1 1153 216 149 0 0 chr1 74504729 74504776 -122690656 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1153 322 326 18 179 chr1 74504983 74505151 -122690281 - B1F2 SINE Alu -8 141 1 1 1153 505 312 78 0 chr1 74505026 74505154 -122690278 - ID_B1 SINE B4 -8 216 79 1 1153 579 203 40 4 chr1 74505587 74505758 -122689674 - B3 SINE B2 0 195 29 1 1153 321 264 164 23 chr1 74507276 74507404 -122688028 - B1F SINE Alu -2 147 2 1 1153 202 267 78 26 chr1 74507429 74507506 -122687926 + MIR3 SINE MIR 128 208 0 2 1153 553 255 14 7 chr1 74508393 74508531 -122686901 + B1_Mur1 SINE Alu 2 140 -9 2 1153 477 0 0 0 chr1 74508541 74508594 -122686838 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1153 358 350 28 7 chr1 74508940 74509081 -122686351 - B1F2 SINE Alu -5 144 1 2 1153 570 247 235 0 chr1 74509223 74509393 -122686039 - ID_B1 SINE B4 -13 211 2 2 1153 506 252 0 10 chr1 74509443 74509543 -122685889 - RSINE1 SINE B4 -64 101 3 2 1153 678 241 14 0 chr1 74509797 74509942 -122685490 - B1_Mus1 SINE Alu 0 148 2 2 1153 249 330 128 0 chr1 74510107 74510201 -122685231 + PB1D10 SINE Alu 12 117 0 2 1153 313 222 32 0 chr1 74510463 74510526 -122684906 - B3 SINE B2 -134 82 18 2 1153 283 292 138 0 chr1 74510678 74510808 -122684624 + B1F1 SINE Alu 1 148 -1 2 1153 1611 42 0 0 chr1 74510876 74511066 -122684366 + B2_Mm1a SINE B2 2 191 -2 3 1153 861 161 0 0 chr1 74511218 74511355 -122684077 - B1_Mur4 SINE Alu -13 137 1 3 1153 923 229 13 85 chr1 74511366 74511504 -122683928 - B3 SINE B2 -4 212 83 3 1153 593 144 167 8 chr1 74511504 74511630 -122683802 + B1_Mur3 SINE Alu 2 147 -2 3 1153 923 229 13 85 chr1 74511630 74511715 -122683717 - B3 SINE B2 -134 82 5 3 1153 1283 20 0 0 chr1 74512331 74512478 -122682954 - B1_Mm SINE Alu 0 147 1 3 1153 1352 79 10 40 chr1 74512933 74513132 -122682300 - B2_Mm1t SINE B2 0 193 1 3 1153 22 35 0 0 chr1 74513133 74513162 -122682270 + AT_rich Low_complexity Low_complexity 1 29 0 3 1153 608 270 8 0 chr1 74513168 74513294 -122682138 - B3 SINE B2 -88 128 2 3 1153 238 342 195 33 chr1 74515093 74515365 -122680067 - MLT1E LTR MaLR -331 322 7 3 1153 180 172 0 0 chr1 74515374 74515403 -122680029 + L2a LINE L2 3393 3421 -5 3 1153 795 182 15 0 chr1 74515526 74515658 -122679774 + B1_Mur4 SINE Alu 11 144 -6 4 1153 509 244 169 44 chr1 74515737 74515900 -122679532 + B3 SINE B2 50 214 -2 4 1153 342 251 57 94 chr1 74515915 74516042 -122679390 + PB1 SINE Alu 1 125 -2 4 1153 842 174 7 0 chr1 74516055 74516193 -122679239 + B1_Mur3 SINE Alu 1 139 -10 4 1153 183 80 0 0 chr1 74516226 74516251 -122679181 + (GGA)n Simple_repeat Simple_repeat 2 26 0 4 1153 537 202 39 0 chr1 74516351 74516455 -122678977 + PB1D9 SINE Alu 1 108 -12 4 1153 865 156 191 16 chr1 74516605 74516788 -122678644 + B3 SINE B2 2 216 0 4 1153 475 270 163 92 chr1 74517490 74517686 -122677746 + ID_B1 SINE B4 8 217 -7 4 1153 473 243 121 34 chr1 74518318 74518467 -122676965 - MER5A DNA MER1_type -22 167 6 4 1153 554 264 6 61 chr1 74518770 74518935 -122676497 - B3A SINE B2 -5 193 38 4 1153 736 142 47 0 chr1 74519176 74519303 -122676129 + B1_Mus1 SINE Alu 5 137 -11 5 1153 1344 62 78 0 chr1 74519303 74519463 -122675969 + B2_Mm1a SINE B2 1 174 -19 5 1153 279 0 0 0 chr1 74519463 74519494 -122675938 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1153 1344 62 78 0 chr1 74519494 74519512 -122675920 + B2_Mm1a SINE B2 175 192 -1 5 1153 1172 54 0 20 chr1 74519707 74519858 -122675574 - B1_Mus1 SINE Alu 0 148 1 5 1153 234 0 0 0 chr1 74520265 74520291 -122675141 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1153 198 0 0 0 chr1 74520291 74520312 -122675120 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1153 1241 27 7 0 chr1 74520428 74520574 -122674858 - B1_Mus2 SINE Alu 0 147 1 5 1153 777 187 7 7 chr1 74520842 74520982 -122674450 + B1_Mur3 SINE Alu 10 149 0 5 1153 376 197 14 0 chr1 74521014 74521085 -122674347 + B3 SINE B2 1 72 -144 5 1153 1119 75 0 0 chr1 74522111 74522257 -122673175 - B1_Mus2 SINE Alu 0 147 2 5 1153 344 360 126 5 chr1 74522360 74522558 -122672874 - L1M5 LINE L1 -518 5606 5385 6 1153 557 270 48 0 chr1 74522610 74522736 -122672696 - B1F2 SINE Alu -16 133 2 6 1153 700 210 41 14 chr1 74522874 74523019 -122672413 - B1_Mur3 SINE Alu 0 149 1 6 1153 553 294 12 42 chr1 74523328 74523495 -122671937 - RSINE1 SINE B4 -1 164 3 6 1153 243 79 0 0 chr1 74523670 74523708 -122671724 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1153 648 271 0 0 chr1 74523730 74523863 -122671569 - B3 SINE B2 -83 133 1 6 1153 472 254 103 32 chr1 74523872 74523998 -122671434 - B1F2 SINE Alu -8 141 7 6 1153 1159 55 7 0 chr1 74524079 74524224 -122671208 - B1_Mus2 SINE Alu 0 147 2 6 1153 548 205 0 9 chr1 74525117 74525230 -122670202 - PB1D9 SINE Alu -7 113 2 6 1153 623 176 7 45 chr1 74525282 74525437 -122669995 - RCHARR1 DNA MER1_type -82 892 744 6 1153 551 271 0 8 chr1 74525758 74525877 -122669555 - ID_B1 SINE B4 -6 218 101 7 1153 448 287 68 30 chr1 74525877 74525891 -122669541 - B1_Mur4 SINE Alu -6 144 7 7 1153 719 269 6 0 chr1 74525921 74526081 -122669351 - RSINE1 SINE B4 -1 164 4 7 1153 441 306 18 60 chr1 74526522 74526689 -122668743 + RSINE1 SINE B4 2 161 -4 7 1153 685 160 89 30 chr1 74526892 74527027 -122668405 - B1_Mur3 SINE Alu -6 143 1 7 1153 766 199 7 14 chr1 74527029 74527167 -122668265 + B1_Mur3 SINE Alu 13 149 0 7 1153 391 182 38 38 chr1 74527430 74527510 -122667922 + PB1D10 SINE Alu 26 105 -12 7 1153 401 386 131 19 chr1 74527512 74527824 -122667608 + MLT1H LTR MaLR 106 452 -97 7 1153 589 229 20 40 chr1 74527873 74528023 -122667409 - B1_Mur2 SINE Alu -1 148 2 7 1153 320 203 34 0 chr1 74529106 74529165 -122666267 + RSINE1 SINE B4 3 63 -102 7 1153 766 297 83 21 chr1 74529284 74529611 -122665821 - MLT1A LTR MaLR -7 367 21 8 1153 772 256 74 36 chr1 74529671 74530097 -122665335 + MYSERV6-int LTR ERVK 4863 5157 -1393 8 1153 306 269 61 61 chr1 74530141 74530256 -122665176 + RMER4B LTR ERVK 443 557 -28 8 1153 661 229 29 39 chr1 74530261 74530636 -122664796 + MYSERV6-int LTR ERVK 1058 1255 -1071 8 1153 911 158 52 42 chr1 74530638 74530830 -122664602 + B2_Mm2 SINE B2 2 195 0 8 1153 2974 196 111 31 chr1 74530832 74531695 -122663737 + MYSERV6-int LTR ERVK 8028 8959 0 8 1153 1344 272 42 35 chr1 74531696 74532126 -122663306 + BGLII_B LTR ERVK 1 433 -8 8 1153 386 168 222 40 chr1 74532181 74532280 -122663152 + PB1D10 SINE Alu 1 117 0 8 1153 378 299 58 35 chr1 74532812 74532938 -122662494 + B4 SINE B4 178 292 0 8 1153 411 323 132 21 chr1 74533422 74533612 -122661820 - ID_B1 SINE B4 -9 215 5 8 1153 806 270 5 54 chr1 74533920 74534143 -122661289 + B3 SINE B2 2 213 -3 8 1153 1030 203 4 123 chr1 74534454 74534690 -122660742 - B3 SINE B2 -7 209 2 8 1153 612 195 35 0 chr1 74534744 74534857 -122660575 + B3A SINE B2 1 117 -81 8 1153 600 239 0 40 chr1 74534922 74535070 -122660362 + B1_Mur4 SINE Alu 9 150 0 9 1153 584 215 13 46 chr1 74535296 74535447 -122659985 + B1_Mur3 SINE Alu 4 149 0 9 1153 222 37 0 0 chr1 74535447 74535474 -122659958 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1153 496 333 0 0 chr1 74535494 74535608 -122659824 + RSINE1 SINE B4 14 127 -38 9 1153 270 0 0 0 chr1 74535623 74535653 -122659779 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1153 256 270 191 0 chr1 74536042 74536157 -122659275 - MIRb SINE MIR -58 210 74 9 1153 417 311 34 75 chr1 74536304 74536450 -122658982 + B4 SINE B4 79 218 -74 9 1153 854 167 14 0 chr1 74536319 74536457 -122658975 + B1_Mur3 SINE Alu 9 148 -1 9 1153 21 36 0 0 chr1 74537103 74537131 -122658301 + AT_rich Low_complexity Low_complexity 1 28 0 9 1153 303 203 156 0 chr1 74537165 74537229 -122658203 + RSINE1 SINE B4 30 103 -62 9 1153 499 196 265 32 chr1 74537465 74537625 -122657807 + B3 SINE B2 13 209 -7 1 1153 406 219 0 0 chr1 74537880 74537953 -122657479 + ID4_ SINE ID 11 83 0 1 1153 349 185 31 0 chr1 74538233 74538298 -122657134 - PB1D10 SINE Alu -3 114 48 1 1153 1192 247 111 17 chr1 74538722 74539200 -122656232 - L1M3 LINE L1 -1940 4200 3678 1 1153 778 218 37 102 chr1 74539203 74539418 -122656014 - ID_B1 SINE B4 -22 202 2 1 1153 345 47 0 0 chr1 74539654 74539697 -122655735 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1153 485 344 36 47 chr1 74539855 74540047 -122655385 - B3A SINE B2 0 198 9 1 1153 551 237 7 56 chr1 74540067 74540210 -122655222 - B1_Mur1 SINE Alu -13 136 1 1 1153 271 308 45 122 chr1 74540297 74540459 -122654973 - RSINE1 SINE B4 -20 272 1 1 1153 283 253 133 0 chr1 74540391 74540466 -122654966 - B1F2 SINE Alu -17 132 48 1 1153 872 122 7 7 chr1 74540459 74540599 -122654833 - B2_Mm2 SINE B2 -55 140 1 1 1153 22 35 0 0 chr1 74540675 74540704 -122654728 + AT_rich Low_complexity Low_complexity 1 29 0 1 1153 863 219 87 0 chr1 74540725 74540921 -122654511 - B3 SINE B2 -2 214 2 1 1153 732 209 140 6 chr1 74540992 74541170 -122654262 - B3 SINE B2 -10 206 5 1 1153 523 299 36 0 chr1 74541195 74541332 -122654100 - B1F1 SINE Alu -1 148 7 1 1153 612 322 66 0 chr1 74541430 74541582 -122653850 - RSINE1 SINE B4 0 165 4 1 1153 929 181 31 26 chr1 74541668 74541861 -122653571 + B2_Mm2 SINE B2 2 195 0 1 1153 282 311 40 0 chr1 74542091 74542165 -122653267 - ID4 SINE ID -6 77 1 1 1153 421 305 111 92 chr1 74543119 74543336 -122652096 - B4A SINE B4 -71 221 1 1 1153 184 321 82 12 chr1 74543656 74543741 -122651691 + L3 LINE CR1 3251 3341 -1148 1 1153 1147 122 28 0 chr1 74544679 74544860 -122650572 - B2_Mm2 SINE B2 -8 187 2 1 1153 201 302 105 129 chr1 74545049 74545383 -122650049 + L2c LINE L2 3001 3326 -61 1 1153 280 286 59 4 chr1 74545415 74545495 -122649937 + B1F2 SINE Alu 1 93 -54 1 1153 266 256 326 0 chr1 74546073 74546159 -122649273 - PB1D7 SINE Alu -5 115 2 1 1153 183 114 0 0 chr1 74547078 74547113 -122648319 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1153 1304 71 37 16 chr1 74547348 74547535 -122647897 - B2_Mm1t SINE B2 -1 192 2 1 1153 867 121 47 54 chr1 74547535 74547684 -122647748 - B1_Mur3 SINE Alu 0 149 2 1 1153 453 298 84 0 chr1 74547757 74547888 -122647544 - ID_B1 SINE B4 -1 223 82 1 1153 930 125 35 0 chr1 74548415 74548559 -122646873 + B1_Mur3 SINE Alu 1 149 0 1 1153 405 286 32 70 chr1 74548707 74548865 -122646567 + RSINE1 SINE B4 14 165 0 1 1153 189 0 0 0 chr1 74549363 74549384 -122646048 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1153 297 0 0 0 chr1 74549384 74549416 -122646016 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1153 194 405 88 23 chr1 74549502 74549717 -122645715 - L2c LINE L2 -234 3153 2925 1 1153 1219 34 0 7 chr1 74549717 74549864 -122645568 + B1_Mus2 SINE Alu 1 146 -1 1 1153 227 29 57 0 chr1 74549865 74549900 -122645532 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1153 824 74 0 0 chr1 74549973 74550081 -122645351 + B1_Mm SINE Alu 40 147 0 1 1153 258 56 0 0 chr1 74550083 74550119 -122645313 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 1 1153 993 95 0 58 chr1 74550213 74550369 -122645063 + B1_Mus1 SINE Alu 2 148 0 1 1153 206 121 0 0 chr1 74550369 74550402 -122645030 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1153 287 204 19 0 chr1 74550403 74550457 -122644975 - ID SINE ID -165 59 5 1 1153 197 227 0 43 chr1 74550505 74550551 -122644881 - L2 LINE L2 -559 2860 2817 1 1153 200 35 35 0 chr1 74550584 74550613 -122644819 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1153 566 142 17 117 chr1 74550751 74550871 -122644561 - B1_Mus1 SINE Alu -1 147 40 1 1153 286 369 97 85 chr1 74550936 74551371 -122644061 - L2 LINE L2 -701 2718 2279 1 1153 23 0 0 0 chr1 74552519 74552542 -122642890 + GC_rich Low_complexity Low_complexity 1 23 0 1 1153 343 325 50 19 chr1 74553504 74553664 -122641768 + L2a LINE L2 2802 2966 -453 1 1153 258 224 129 98 chr1 74553812 74554005 -122641427 + L2a LINE L2 3225 3423 -3 1 1153 408 200 33 11 chr1 74554212 74554303 -122641129 + B1_Mur1 SINE Alu 57 149 0 1 1153 304 215 149 11 chr1 74554316 74554410 -122641022 + PB1D10 SINE Alu 5 111 -6 1 1153 560 292 12 95 chr1 74554425 74554532 -122640900 + ID_B1 SINE B4 3 200 -24 1 1153 635 182 16 24 chr1 74554532 74554656 -122640776 + B1_Mur1 SINE Alu 19 141 -8 1 1153 560 292 12 95 chr1 74554656 74554667 -122640765 + ID_B1 SINE B4 201 224 0 1 1153 384 291 0 0 chr1 74554721 74554800 -122640632 + RSINE1 SINE B4 2 80 -85 1 1153 318 240 192 39 chr1 74555638 74555742 -122639690 + PB1D9 SINE Alu 1 120 0 1 1153 902 256 102 15 chr1 74556119 74556385 -122639047 - B4 SINE B4 -2 290 2 1 1153 313 284 27 0 chr1 74556422 74556496 -122638936 - ID4 SINE ID -6 77 2 1 1153 612 292 88 10 chr1 74556755 74556949 -122638483 + B4A SINE B4 7 215 -77 1 1153 420 309 68 24 chr1 74557436 74557642 -122637790 + L1ME2 LINE L1 5935 6149 -15 1 1153 1076 73 0 7 chr1 74557713 74557865 -122637567 + B2_Mm2 SINE B2 2 152 -43 1 1153 439 52 91 0 chr1 74557864 74557941 -122637491 - B2_Mm1a SINE B2 0 193 110 1 1153 341 123 0 0 chr1 74557916 74557973 -122637459 - B2_Mm2 SINE B2 -137 58 2 1 1153 532 169 0 10 chr1 74558135 74558231 -122637201 - B1_Mur2 SINE Alu -34 115 21 1 1153 27 52 0 17 chr1 74558318 74558340 -122637092 + AT_rich Low_complexity Low_complexity 1 22 0 1 1153 611 140 357 0 chr1 74558340 74558497 -122636935 - B3 SINE B2 -2 214 2 1 1153 27 52 0 17 chr1 74558497 74558533 -122636899 + AT_rich Low_complexity Low_complexity 1 36 0 1 1153 1018 31 0 0 chr1 74558675 74558804 -122636628 - B1_Mm SINE Alu 0 147 19 1 1153 396 299 21 0 chr1 74558812 74558909 -122636523 - B1_Mur1 SINE Alu -37 112 14 1 1153 182 219 49 0 chr1 74558931 74558972 -122636460 + MIRm SINE MIR 112 154 -122 1 1153 391 246 196 49 chr1 74558975 74559159 -122636273 + B3 SINE B2 1 211 -5 1 1153 25 51 0 0 chr1 74559164 74559203 -122636229 + AT_rich Low_complexity Low_complexity 1 39 0 1 1153 823 243 40 0 chr1 74559233 74559410 -122636022 + B3 SINE B2 6 189 -27 1 1153 2251 80 40 25 chr1 74559420 74559742 -122635690 - ORR1A2 LTR MaLR 0 327 1 1 1153 9491 134 46 7 chr1 74559742 74561461 -122633971 - ORR1A2-int LTR MaLR 0 1792 7 1 1153 364 43 0 0 chr1 74561468 74561514 -122633918 - ORR1A2 LTR MaLR -2 324 279 1 1153 351 0 0 0 chr1 74561515 74561554 -122633878 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1153 1151 98 0 0 chr1 74561559 74561723 -122633709 - B2_Mm2 SINE B2 -31 164 1 1 1153 221 53 0 50 chr1 74561734 74561774 -122633658 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1153 1095 51 0 14 chr1 74561774 74561912 -122633520 - B1_Mm SINE Alu -11 136 1 1 1153 1701 83 83 0 chr1 74561914 74562178 -122633254 - ORR1A2 LTR MaLR -41 286 1 1 1153 509 246 17 34 chr1 74562250 74562368 -122633064 - B1_Mur1 SINE Alu -19 130 15 1 1153 467 108 52 41 chr1 74562448 74562545 -122632887 - Lx9 LINE L1 -1 7643 7546 1 1153 233 320 93 27 chr1 74563321 74563504 -122631928 - L1MC LINE L1 -2074 5808 5614 1 1153 378 0 0 0 chr1 74563992 74564034 -122631398 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1153 727 52 0 0 chr1 74564034 74564131 -122631301 - B1_Mus2 SINE Alu 0 147 51 1 1153 953 56 8 0 chr1 74564129 74564255 -122631177 + B1_Mus2 SINE Alu 15 141 -6 1 1153 643 219 95 0 chr1 74564563 74564700 -122630732 + RSINE1 SINE B4 12 161 -4 1 1153 225 0 0 0 chr1 74564700 74564725 -122630707 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1153 1040 190 23 45 chr1 74565059 74565280 -122630152 + B3 SINE B2 1 216 0 1 1153 513 176 9 0 chr1 74565996 74566104 -122629328 - B1_Mur4 SINE Alu -1 149 41 1 1153 2235 83 18 24 chr1 74566792 74567125 -122628307 - Lx LINE L1 0 6654 6324 1 1153 455 173 164 0 chr1 74567125 74567220 -122628212 - B1_Mus2 SINE Alu -29 118 7 1 1153 325 239 33 22 chr1 74567360 74567450 -122627982 + RSINE1 SINE B4 5 95 -70 1 1153 279 0 0 0 chr1 74567477 74567508 -122627924 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1153 386 311 0 46 chr1 74567635 74567743 -122627689 + B1F1 SINE Alu 1 103 -17 1 1153 288 318 130 9 chr1 74567896 74568004 -122627428 + ID_B1 SINE B4 70 190 -34 1 1153 285 51 0 0 chr1 74568006 74568045 -122627387 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1153 465 34 0 0 chr1 74568045 74568103 -122627329 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1153 268 255 154 73 chr1 74568186 74568296 -122627136 - B3A SINE B2 -79 119 1 1 1153 804 282 0 78 chr1 74569020 74569251 -122626181 - ID_B1 SINE B4 -1 223 11 1 1153 206 103 0 49 chr1 74569405 74569446 -122625986 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1 1153 1106 90 0 7 chr1 74569446 74569592 -122625840 - B1_Mus1 SINE Alu -1 147 3 1 1153 283 277 78 10 chr1 74569818 74569920 -122625512 - B1F SINE Alu -40 109 1 1 1153 270 0 0 0 chr1 74570216 74570246 -122625186 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1153 763 125 140 32 chr1 74570250 74570407 -122625025 - B2_Mm2 SINE B2 -20 175 2 1 1153 785 152 244 0 chr1 74570685 74570882 -122624550 - MTD LTR MaLR -2 417 173 1 1153 280 123 18 0 chr1 74570895 74570952 -122624480 + B3 SINE B2 158 215 -1 1 1153 435 322 62 72 chr1 74570973 74571264 -122624168 + B4A SINE B4 5 292 0 1 1153 533 318 40 0 chr1 74571397 74571548 -122623884 - RSINE1 SINE B4 0 165 9 2 1153 357 311 33 0 chr1 74571616 74571738 -122623694 + L1ME3 LINE L1 5589 5714 -448 2 1153 374 265 153 37 chr1 74571752 74571893 -122623539 + L1ME3 LINE L1 5778 5947 -215 2 1153 652 246 81 15 chr1 74571893 74572091 -122623341 + B3 SINE B2 2 212 -4 2 1153 374 265 153 37 chr1 74572091 74572243 -122623189 + L1ME3 LINE L1 5948 6105 -57 2 1153 685 311 124 32 chr1 74572280 74572722 -122622710 - MLT1D LTR MaLR 0 505 23 2 1153 417 225 162 0 chr1 74572853 74572964 -122622468 + B1F SINE Alu 12 140 -9 2 1153 290 286 24 0 chr1 74573018 74573102 -122622330 - B1F SINE Alu -12 137 52 2 1153 976 46 123 0 chr1 74573213 74573343 -122622089 + B1_Mus2 SINE Alu 2 147 0 2 1153 273 321 0 67 chr1 74573767 74573857 -122621575 + B1F2 SINE Alu 2 85 -64 2 1153 629 230 7 35 chr1 74573905 74574049 -122621383 + B1_Mur1 SINE Alu 1 140 -9 2 1153 216 0 0 0 chr1 74577407 74577431 -122618001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1153 539 238 135 55 chr1 74577981 74578181 -122617251 + B4A SINE B4 4 219 -73 2 1153 327 236 89 54 chr1 74578204 74578316 -122617116 + B1_Mur1 SINE Alu 34 149 0 2 1153 774 184 0 42 chr1 74578367 74578509 -122616923 + B1_Mur2 SINE Alu 12 147 -2 2 1153 832 78 35 0 chr1 74578877 74578993 -122616439 - PB1D9 SINE Alu 0 120 1 2 1153 564 232 130 48 chr1 74579109 74579192 -122616240 - MTD LTR MaLR -24 395 290 2 1153 1508 42 26 11 chr1 74579192 74579382 -122616050 + B2_Mm1a SINE B2 1 193 0 2 1153 564 232 130 48 chr1 74579382 74579506 -122615926 - MTD LTR MaLR -130 289 171 2 144 234 316 70 9 chr1 74579892 74580007 -122615425 + L1M5 LINE L1 3604 3725 -2421 2 1154 484 203 101 8 chr1 74580151 74580280 -122615152 + B1F SINE Alu 1 141 -8 2 1154 843 232 25 25 chr1 74580292 74580495 -122614937 + B3 SINE B2 3 205 -11 2 1154 214 193 18 0 chr1 74580495 74580552 -122614880 + T-rich Low_complexity Low_complexity 3 60 0 2 1154 1143 76 0 14 chr1 74580553 74580700 -122614732 - B1_Mus2 SINE Alu -1 146 2 2 1154 1428 75 5 5 chr1 74580847 74581036 -122614396 + B2_Mm1a SINE B2 2 190 -3 2 1154 555 148 83 0 chr1 74581037 74581145 -122614287 + B1_Mur4 SINE Alu 34 150 0 2 1154 1382 85 16 0 chr1 74581308 74581497 -122613935 - B2_Mm2 SINE B2 -2 193 2 2 1154 653 147 10 0 chr1 74581521 74581623 -122613809 + PB1D9 SINE Alu 12 114 -6 2 1154 302 253 12 37 chr1 74581644 74581726 -122613706 + ID_B1 SINE B4 93 172 -52 2 1154 475 289 14 21 chr1 74582104 74582249 -122613183 + ID_B1 SINE B4 81 224 0 2 1154 1589 37 27 0 chr1 74582288 74582476 -122612956 + B2_Mm1a SINE B2 1 193 0 2 1154 1033 185 82 0 chr1 74582490 74582685 -122612747 + B3 SINE B2 3 213 -3 2 1154 616 246 0 0 chr1 74582702 74582824 -122612608 - B1_Mur3 SINE Alu -14 135 14 2 1154 1048 67 0 0 chr1 74582824 74582958 -122612474 + B1_Mus2 SINE Alu 2 135 -12 2 1154 347 280 20 0 chr1 74583025 74583125 -122612307 + B3 SINE B2 27 128 -88 2 1154 35 63 0 0 chr1 74583128 74583191 -122612241 + AT_rich Low_complexity Low_complexity 1 63 0 2 1154 606 200 230 45 chr1 74583279 74583457 -122611975 + B3 SINE B2 5 215 -1 2 1154 1183 70 0 0 chr1 74584047 74584205 -122611227 + B2_Mm2 SINE B2 1 158 -37 2 1154 183 42 0 0 chr1 74584206 74584230 -122611202 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2 1154 21 71 0 0 chr1 74584297 74584339 -122611093 + AT_rich Low_complexity Low_complexity 1 42 0 2 1154 549 102 60 12 chr1 74584399 74584567 -122610865 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1154 251 134 49 0 chr1 74584580 74584662 -122610770 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1154 332 339 75 63 chr1 74584686 74584925 -122610507 - B4 SINE B4 -17 275 34 2 1154 778 201 105 1 chr1 74584944 74585134 -122610298 - B4A SINE B4 -64 228 2 2 1154 531 0 0 0 chr1 74585600 74585659 -122609773 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1154 306 0 0 0 chr1 74585659 74585692 -122609740 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1154 297 0 0 0 chr1 74585692 74585724 -122609708 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1154 544 225 7 65 chr1 74585724 74585862 -122609570 - RSINE1 SINE B4 -34 131 2 2 1154 1068 86 0 0 chr1 74585959 74586098 -122609334 + B1_Mus1 SINE Alu 1 139 -9 2 1154 892 68 15 0 chr1 74586098 74586231 -122609201 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 1154 1193 55 0 7 chr1 74586418 74586566 -122608866 + B1_Mm SINE Alu 1 147 0 2 1154 651 46 0 0 chr1 74586567 74586654 -122608778 + (CAGAA)n Simple_repeat Simple_repeat 4 90 0 2 1154 328 259 145 43 chr1 74586833 74586950 -122608482 + ID_B1 SINE B4 93 221 -3 2 1154 1277 101 16 16 chr1 74586967 74587149 -122608283 + B2_Mm2 SINE B2 5 186 -9 2 1154 409 258 8 84 chr1 74587261 74587392 -122608040 + PB1 SINE Alu 4 124 -3 2 1154 22 0 0 0 chr1 74587470 74587492 -122607940 + AT_rich Low_complexity Low_complexity 1 22 0 2 1154 1138 82 0 0 chr1 74587492 74587639 -122607793 - B1_Mm SINE Alu 0 147 1 2 1154 200 228 0 17 chr1 74588303 74588361 -122607071 + T-rich Low_complexity Low_complexity 4 60 0 2 1154 311 208 14 14 chr1 74588530 74588603 -122606829 + PB1D10 SINE Alu 39 111 -6 2 1154 804 251 17 77 chr1 74588672 74588905 -122606527 + ID_B1 SINE B4 4 222 -2 2 1154 353 276 0 30 chr1 74590624 74590725 -122604707 - ID_B1 SINE B4 -29 195 98 2 1154 205 271 29 0 chr1 74591062 74591132 -122604300 + GA-rich Low_complexity Low_complexity 1 72 0 2 1154 1137 70 0 14 chr1 74591623 74591767 -122603665 - B1_Mus1 SINE Alu -2 146 5 2 1154 206 32 0 31 chr1 74592047 74592079 -122603353 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1154 1216 29 0 0 chr1 74592079 74592218 -122603214 - B1_Mm SINE Alu -8 139 1 2 1154 677 77 2 2 chr1 74592504 74592613 -122602819 + B1_Mus2 SINE Alu 23 131 -18 2 1154 282 152 0 0 chr1 74592608 74592654 -122602778 + B1_Mur4 SINE Alu 99 144 -6 2 1154 676 193 7 7 chr1 74592709 74592845 -122602587 + B1_Mur3 SINE Alu 1 136 -13 2 1154 880 90 7 7 chr1 74592845 74592991 -122602441 + (GAAA)n Simple_repeat Simple_repeat 4 149 0 2 1154 1077 214 41 0 chr1 74593095 74593291 -122602141 - B3 SINE B2 -10 206 3 2 1154 350 240 13 0 chr1 74593369 74593444 -122601988 - ID_B1 SINE B4 0 224 149 2 1154 1395 64 37 5 chr1 74593509 74593697 -122601735 - B2_Mm2 SINE B2 0 195 2 2 1154 445 211 67 0 chr1 74593855 74593959 -122601473 + PB1D10 SINE Alu 2 112 -5 2 1154 303 314 102 25 chr1 74594929 74595086 -122600346 + MIRb SINE MIR 52 220 -48 2 1154 518 245 107 7 chr1 74596340 74596480 -122598952 + RSINE1 SINE B4 6 159 -6 2 1154 1164 44 0 0 chr1 74596664 74596801 -122598631 + B1_Mus2 SINE Alu 2 138 -9 2 1154 677 264 12 6 chr1 74596928 74597088 -122598344 + ID_B1 SINE B4 8 168 -56 2 1154 298 327 48 0 chr1 74597008 74597112 -122598320 + PB1D10 SINE Alu 8 116 -1 2 1154 294 57 0 54 chr1 74597510 74597566 -122597866 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1154 913 159 14 0 chr1 74597942 74598087 -122597345 + B1_Mur3 SINE Alu 3 149 0 2 1154 382 266 32 0 chr1 74598238 74598332 -122597100 + B4A SINE B4 1 97 -195 2 1154 501 17 0 0 chr1 74598333 74598391 -122597041 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1154 309 141 0 0 chr1 74598399 74598470 -122596962 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1154 1194 67 0 6 chr1 74599065 74599231 -122596201 - B2_Mm1t SINE B2 -22 171 7 2 1154 188 344 0 0 chr1 74599515 74599576 -122595856 - MIRc SINE MIR -39 229 169 2 1154 406 208 10 40 chr1 74599720 74599818 -122595614 + B4A SINE B4 1 95 -197 2 1154 504 115 250 0 chr1 74599818 74599922 -122595510 + B2_Mm2 SINE B2 1 130 -65 2 1154 1084 96 2 29 chr1 74599953 74600430 -122595002 + (GAA)n Simple_repeat Simple_repeat 1 463 0 2 1154 1093 75 0 39 chr1 74600433 74600574 -122594858 + B1_Mm SINE Alu 1 137 -10 2 1154 198 0 0 0 chr1 74600574 74600596 -122594836 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1154 1093 75 0 39 chr1 74600596 74600607 -122594825 + B1_Mm SINE Alu 138 147 0 2 1154 222 171 0 0 chr1 74600629 74600670 -122594762 + B1_Mur2 SINE Alu 58 98 -51 2 1154 236 232 69 29 chr1 74600775 74600877 -122594555 - Lx4B LINE L1 -6 7052 6947 2 1154 1200 41 0 27 chr1 74601553 74601703 -122593729 - B1_Mm SINE Alu 0 147 2 2 1154 817 137 208 6 chr1 74601704 74601887 -122593545 - URR1A DNA MER1_type -6 220 1 2 1154 33 25 0 0 chr1 74602760 74602800 -122592632 + AT_rich Low_complexity Low_complexity 1 40 0 2 1154 1359 85 0 41 chr1 74602827 74603023 -122592409 - B2_Mm2 SINE B2 -7 188 1 2 1154 567 124 33 7 chr1 74603046 74603154 -122592278 + B1_Mur4 SINE Alu 1 150 0 2 1154 480 77 0 0 chr1 74603154 74603219 -122592213 + (A)n Simple_repeat Simple_repeat 1 65 0 2 1154 952 92 8 0 chr1 74603219 74603349 -122592083 - B1_Mus1 SINE Alu -13 135 5 2 1154 1156 49 14 0 chr1 74603385 74603529 -122591903 - B1_Mus2 SINE Alu 0 147 2 2 1154 1750 16 0 0 chr1 74603884 74604077 -122591355 + B2_Mm1a SINE B2 1 193 0 2 1154 1424 54 54 0 chr1 74604551 74604735 -122590697 - B2_Mm2 SINE B2 -1 194 1 2 1154 189 0 0 0 chr1 74604743 74604764 -122590668 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1154 823 37 0 0 chr1 74604768 74604876 -122590556 - B1_Mm SINE Alu 0 147 40 2 1154 295 104 343 0 chr1 74604885 74604952 -122590480 - BC1_Mm scRNA scRNA -62 90 1 3 1154 330 263 92 31 chr1 74605017 74605115 -122590317 - PB1D10 SINE Alu -1 116 13 3 1154 601 248 134 0 chr1 74605044 74605193 -122590239 - ID_B1 SINE B4 -54 170 2 3 1154 1397 95 11 5 chr1 74605279 74605469 -122589963 - B2_Mm2 SINE B2 -4 191 1 3 1154 452 18 0 17 chr1 74605519 74605577 -122589855 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 3 1154 483 218 107 50 chr1 74605596 74605736 -122589696 - RSINE1 SINE B4 -15 150 3 3 1154 748 233 120 35 chr1 74605864 74606064 -122589368 - ID_B1 SINE B4 -7 217 1 3 1154 198 123 53 0 chr1 74606075 74606132 -122589300 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1154 1154 42 42 0 chr1 74606180 74606322 -122589110 - B1_Mus1 SINE Alu 0 148 1 3 1154 660 196 0 0 chr1 74606389 74606501 -122588931 - B1_Mus1 SINE Alu -6 142 31 3 1154 700 207 191 0 chr1 74606519 74606707 -122588725 - ID_B1 SINE B4 0 224 1 3 1154 261 0 0 0 chr1 74606923 74606952 -122588480 + (GAA)n Simple_repeat Simple_repeat 1 29 0 3 1154 561 52 0 0 chr1 74607570 74607647 -122587785 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 3 1154 180 0 0 0 chr1 74607647 74607667 -122587765 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1154 646 229 21 0 chr1 74608073 74608213 -122587219 - B1_Mur1 SINE Alu 0 149 7 3 1154 712 258 98 0 chr1 74608897 74609091 -122586341 - ID_B1 SINE B4 -10 214 2 3 1154 207 162 0 0 chr1 74609815 74609852 -122585580 + G-rich Low_complexity Low_complexity 5 41 0 3 1154 479 286 87 0 chr1 74609856 74609982 -122585450 - B1F2 SINE Alu -12 137 1 3 1154 372 219 147 39 chr1 74610410 74610572 -122584860 + MIR SINE MIR 27 207 -61 3 1154 1231 28 0 0 chr1 74610572 74610713 -122584719 + B1_Mus2 SINE Alu 1 141 -6 3 1154 300 290 94 72 chr1 74610713 74610773 -122584659 + MIRb SINE MIR 208 260 -8 3 1154 772 259 26 11 chr1 74611275 74611466 -122583966 - B3A SINE B2 -4 194 1 3 1154 767 207 0 14 chr1 74612019 74612166 -122583266 - B1_Mur2 SINE Alu -3 146 2 3 1154 1161 83 45 0 chr1 74614225 74614382 -122581050 + B2_Mm2 SINE B2 32 195 0 3 1154 792 165 254 6 chr1 74614570 74614735 -122580697 + B3 SINE B2 1 206 -10 3 1154 240 111 0 0 chr1 74615382 74615418 -122580014 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1154 222 211 83 50 chr1 74615426 74615486 -122579946 - BC1_Mm scRNA scRNA -87 65 4 3 1154 2653 50 41 9 chr1 74615519 74615861 -122579571 + L1Md_F2 LINE L1 6228 6580 -2 3 1154 272 261 140 35 chr1 74615901 74616044 -122579388 - MIR SINE MIR -21 241 84 3 1154 709 245 14 0 chr1 74616071 74616210 -122579222 + B3 SINE B2 16 156 -60 3 1154 333 339 147 18 chr1 74619199 74619424 -122576008 - MIR SINE MIR -1 261 8 3 1154 319 194 0 118 chr1 74619447 74619523 -122575909 - ID SINE ID -149 75 9 3 1154 480 176 11 34 chr1 74619799 74619887 -122575545 - B4 SINE B4 -206 86 1 3 1154 21 0 0 0 chr1 74620540 74620561 -122574871 + AT_rich Low_complexity Low_complexity 1 21 0 3 1154 519 264 93 13 chr1 74620667 74620817 -122574615 - MIR SINE MIR -3 259 98 3 1154 364 206 0 14 chr1 74620950 74621019 -122574413 + B1_Mur3 SINE Alu 76 143 -6 3 1154 504 0 0 0 chr1 74621019 74621075 -122574357 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 3 1154 1285 90 16 28 chr1 74621653 74621835 -122573597 + B2_Mm2 SINE B2 1 180 -15 3 1154 288 0 0 0 chr1 74621836 74621868 -122573564 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1154 313 337 179 10 chr1 74622097 74622298 -122573134 + MIR SINE MIR 6 240 -22 3 1154 1750 192 125 8 chr1 74623824 74624201 -122571231 + MTC LTR MaLR 1 421 0 3 1154 1119 113 47 12 chr1 74624423 74624593 -122570839 + B2_Mm2 SINE B2 3 178 -17 3 1154 383 283 142 0 chr1 74625435 74625541 -122569891 - ID_B1 SINE B4 -2 222 102 3 1154 498 297 43 33 chr1 74626816 74627013 -122568419 + B4A SINE B4 20 259 -33 3 1154 504 230 75 53 chr1 74626996 74627129 -122568303 + RSINE1 SINE B4 29 164 -1 3 1154 211 274 20 0 chr1 74627220 74627271 -122568161 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1154 1200 69 0 0 chr1 74627392 74627537 -122567895 + B1_Mus1 SINE Alu 4 148 0 3 1154 762 183 166 0 chr1 74627605 74627780 -122567652 + B3 SINE B2 2 205 -11 3 1154 1167 49 134 12 chr1 74627853 74628017 -122567415 + B2_Mm1a SINE B2 1 184 -9 3 1154 403 328 85 31 chr1 74628274 74628285 -122567147 - ID_B1 SINE B4 -11 213 83 3 1154 666 248 0 0 chr1 74628285 74628398 -122567034 - B1_Mur2 SINE Alu -36 113 1 3 1154 1505 57 5 10 chr1 74628493 74628687 -122566745 - B2_Mm1t SINE B2 0 193 1 3 1154 836 93 17 0 chr1 74628794 74628912 -122566520 - PB1D9 SINE Alu 0 120 1 3 1154 312 309 72 86 chr1 74628940 74629149 -122566283 - B4A SINE B4 -60 232 27 3 1154 404 262 131 0 chr1 74629175 74629282 -122566150 - B1F SINE Alu -11 138 18 3 1154 2284 152 109 40 chr1 74629311 74629805 -122565627 + RLTR11A LTR ERVK 1 528 0 3 1154 234 136 0 0 chr1 74629938 74629982 -122565450 + (CAA)n Simple_repeat Simple_repeat 1 44 0 3 1154 222 289 106 43 chr1 74630172 74630266 -122565166 + B1_Mus1 SINE Alu 47 146 -2 3 1154 547 227 14 50 chr1 74630350 74630509 -122564923 - B3 SINE B2 -8 187 42 3 1154 432 0 0 0 chr1 74630664 74630712 -122564720 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 3 1154 509 238 143 0 chr1 74630716 74630842 -122564590 - B1_Mur1 SINE Alu -5 144 1 3 1154 25 31 0 0 chr1 74630910 74630942 -122564490 + AT_rich Low_complexity Low_complexity 1 32 0 3 1154 705 302 7 0 chr1 74630961 74631110 -122564322 - RSINE1 SINE B4 -14 151 2 3 1154 575 232 0 43 chr1 74631133 74631250 -122564182 - PB1D9 SINE Alu 0 120 9 3 1154 298 273 221 47 chr1 74631138 74631265 -122564167 - ID_B1 SINE B4 0 224 76 3 1154 246 62 0 0 chr1 74632300 74632332 -122563100 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1154 630 229 53 8 chr1 74632960 74633092 -122562340 - B3A SINE B2 -60 138 1 3 1154 381 184 40 6 chr1 74633096 74633175 -122562257 - ID SINE ID -207 85 8 3 1154 739 127 33 25 chr1 74633462 74633583 -122561849 + B1_Mur2 SINE Alu 24 145 -4 3 1154 1254 103 5 11 chr1 74633659 74633845 -122561587 + B2_Mm2 SINE B2 2 186 -9 3 1154 254 316 26 74 chr1 74634051 74634207 -122561225 + MIR SINE MIR 3 152 -124 3 1154 201 74 0 0 chr1 74635272 74635299 -122560133 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1154 295 247 117 0 chr1 74637748 74637825 -122557607 - RSINE1 SINE B4 -3 162 77 3 1154 570 137 267 25 chr1 74638938 74639058 -122556374 - B1_Mur4 SINE Alu -1 149 1 3 1154 28 0 0 0 chr1 74639199 74639227 -122556205 + AT_rich Low_complexity Low_complexity 1 28 0 3 1154 1143 82 0 0 chr1 74639234 74639381 -122556051 + B1_Mus1 SINE Alu 2 148 0 3 1154 1148 37 0 0 chr1 74639406 74639541 -122555891 + B2_Mm2 SINE B2 2 136 -59 3 1154 432 97 0 0 chr1 74639541 74639603 -122555829 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1154 219 36 0 0 chr1 74639615 74639643 -122555789 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1154 471 18 0 0 chr1 74639643 74639698 -122555734 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1154 1376 34 91 0 chr1 74639768 74639925 -122555507 + B2_Mm1a SINE B2 1 160 -33 3 1154 198 0 0 0 chr1 74639925 74639947 -122555485 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3 1154 1376 34 91 0 chr1 74639947 74639964 -122555468 + B2_Mm1a SINE B2 161 189 -4 3 1154 328 140 0 0 chr1 74639975 74640025 -122555407 + ID SINE ID 2 51 -173 3 1154 790 215 140 45 chr1 74641383 74641583 -122553849 - ID_B1 SINE B4 0 224 6 3 1154 1702 31 0 0 chr1 74642771 74642964 -122552468 + B2_Mm1a SINE B2 1 193 0 3 1154 481 247 73 7 chr1 74642993 74643121 -122552311 + PB1D7 SINE Alu 6 138 -12 3 1154 1257 34 0 0 chr1 74643514 74643662 -122551770 - B1_Mus1 SINE Alu 0 148 1 3 1154 496 257 9 9 chr1 74643770 74643876 -122551556 - ID_B1 SINE B4 0 224 119 3 1154 365 262 36 0 chr1 74643993 74644077 -122551355 + BC1_Mm scRNA scRNA 4 90 -62 3 1154 323 180 191 0 chr1 74644102 74644191 -122551241 + PB1D9 SINE Alu 2 107 -13 3 1154 1776 159 66 80 chr1 74644204 74644567 -122550865 + MTD LTR MaLR 61 418 -1 3 1154 375 78 0 0 chr1 74644753 74644804 -122550628 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1154 284 333 86 13 chr1 74646289 74646441 -122548991 + MIRb SINE MIR 77 239 -29 3 1154 477 0 0 0 chr1 74646761 74646814 -122548618 + (CTA)n Simple_repeat Simple_repeat 1 53 0 3 1154 206 62 31 0 chr1 74647059 74647091 -122548341 + (TGGGGG)n Simple_repeat Simple_repeat 5 37 0 3 1154 334 312 184 10 chr1 74648879 74649086 -122546346 + MIR SINE MIR 8 250 -12 3 1154 216 0 0 0 chr1 74649417 74649441 -122545991 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1154 960 189 45 25 chr1 74649444 74649645 -122545787 - RMER15 LTR ERVL -112 463 259 3 1154 313 292 0 10 chr1 74650137 74650234 -122545198 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 1154 869 287 39 42 chr1 74650242 74650526 -122544906 - B4A SINE B4 -8 284 2 3 1154 315 0 0 0 chr1 74650535 74650570 -122544862 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 3 1154 980 140 25 13 chr1 74650571 74650730 -122544702 - B2_Mm2 SINE B2 -34 161 1 3 1154 1228 93 21 27 chr1 74650751 74650938 -122544494 - B2_Mm2 SINE B2 -7 188 3 4 1154 365 235 121 0 chr1 74650938 74651070 -122544362 + MIR SINE MIR 114 261 -1 4 1154 1001 253 5 0 chr1 74651283 74651477 -122543955 + ID_B1 SINE B4 12 206 -18 4 1154 303 295 78 78 chr1 74651574 74651754 -122543678 - MIR SINE MIR -10 252 73 4 1154 339 277 82 62 chr1 74652282 74652302 -122543130 - MT2B LTR ERVL -299 302 205 4 1154 557 179 38 0 chr1 74652302 74652420 -122543012 - B1_Mus1 SINE Alu -22 127 1 4 1154 495 0 0 0 chr1 74652438 74652493 -122542939 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 1154 578 256 0 0 chr1 74652506 74652627 -122542805 - RSINE1 SINE B4 -8 157 37 4 1154 3156 33 2 44 chr1 74652630 74653037 -122542395 + RLTR10 LTR ERVK 1 390 0 4 1154 15540 34 43 39 chr1 74653037 74655012 -122540420 + RLTR10-int LTR ERVK 1 1984 -3 4 1154 2972 28 2 143 chr1 74655014 74655468 -122539964 + RLTR10 LTR ERVK 1 390 0 4 1154 377 292 88 93 chr1 74655989 74656193 -122539239 - LTR84a LTR ERVL 0 757 555 4 1154 391 369 86 16 chr1 74656363 74656608 -122538824 - LTR84a LTR ERVL -412 345 84 4 1154 694 200 87 22 chr1 74656624 74656808 -122538624 - B3A SINE B2 0 198 3 4 1154 899 221 108 0 chr1 74658340 74658535 -122536897 - B3 SINE B2 0 216 1 4 1154 666 185 0 0 chr1 74658542 74658672 -122536760 + T-rich Low_complexity Low_complexity 1 130 0 4 1154 378 0 0 0 chr1 74658670 74658712 -122536720 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4 1154 1419 93 10 5 chr1 74658714 74658908 -122536524 - B2_Mm2 SINE B2 0 195 1 4 1154 1148 82 7 0 chr1 74659532 74659678 -122535754 - B1_Mus2 SINE Alu 0 147 1 4 1154 374 286 9 37 chr1 74659716 74659825 -122535607 + PB1 SINE Alu 22 127 0 4 1154 1648 22 0 0 chr1 74659826 74660007 -122535425 + B2_Mm1a SINE B2 2 182 -11 4 1154 279 0 0 0 chr1 74660007 74660038 -122535394 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1154 913 257 27 21 chr1 74660333 74660520 -122534912 + B3 SINE B2 1 188 -28 4 1154 546 174 52 35 chr1 74660582 74660727 -122534705 - MLT1A1 LTR MaLR -12 396 235 4 1154 514 223 19 0 chr1 74660785 74660888 -122534544 - PB1D10 SINE Alu -12 105 1 4 1154 1004 190 43 5 chr1 74660917 74661102 -122534330 - B3 SINE B2 -24 192 1 4 1154 505 279 38 32 chr1 74661179 74661364 -122534068 - L1MC4 LINE L1 -66 7976 7791 4 1154 1172 62 7 0 chr1 74661403 74661549 -122533883 + B1_Mus1 SINE Alu 2 148 0 4 1154 604 219 33 8 chr1 74661571 74661691 -122533741 + B1_Mur2 SINE Alu 27 149 0 4 1154 777 230 64 20 chr1 74661823 74662027 -122533405 + B3 SINE B2 2 214 -2 4 1154 901 152 14 0 chr1 74662217 74662362 -122533070 + B1_Mus1 SINE Alu 1 147 -1 4 1154 201 39 0 0 chr1 74662364 74662390 -122533042 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1154 380 289 76 110 chr1 74663492 74663756 -122531676 - MER58D DNA MER1_type -8 378 124 4 1154 915 323 23 8 chr1 74663883 74664139 -122531293 - B4A SINE B4 -4 288 29 4 1154 747 165 0 0 chr1 74664136 74664251 -122531181 - B1_Mur2 SINE Alu -25 124 10 4 1154 231 246 45 15 chr1 74664323 74664389 -122531043 - ID4 SINE ID 0 83 16 4 1154 454 288 129 0 chr1 74664437 74664569 -122530863 - RSINE1 SINE B4 -15 150 2 4 1154 438 235 97 2 chr1 74664638 74664750 -122530682 - PB1D9 SINE Alu -19 128 13 4 1154 561 308 158 5 chr1 74664752 74664974 -122530458 - L1M4 LINE L1 -473 5705 5450 4 1154 1123 210 5 14 chr1 74665004 74665217 -122530215 + B3 SINE B2 2 212 -4 4 1154 658 177 73 0 chr1 74665318 74665442 -122529990 - B1_Mus2 SINE Alu -2 145 13 4 1154 451 294 51 14 chr1 74665442 74665456 -122529976 - ID_B1 SINE B4 -2 222 80 4 1154 1317 78 39 6 chr1 74665475 74665655 -122529777 + B2_Mm2 SINE B2 2 187 -8 4 1154 771 83 182 0 chr1 74665676 74665797 -122529635 - B1_Mur4 SINE Alu -7 143 1 4 1154 348 242 36 38 chr1 74665798 74665956 -122529476 - L1M4 LINE L1 -813 5333 5174 4 1154 1098 79 0 0 chr1 74666013 74666152 -122529280 - B1_Mus1 SINE Alu -9 139 1 4 1154 361 324 20 40 chr1 74666180 74666331 -122529101 - B1F SINE Alu 0 149 2 4 1154 1092 117 0 0 chr1 74666424 74666569 -122528863 + B1_Mus1 SINE Alu 3 147 -1 4 1154 5678 55 22 3 chr1 74666630 74667345 -122528087 - L1_Mus1 LINE L1 0 6567 5839 4 1154 239 130 109 0 chr1 74667382 74667428 -122528004 - L1M4 LINE L1 -1117 5029 4979 4 1154 254 26 53 0 chr1 74667625 74667663 -122527769 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 4 1154 406 168 109 59 chr1 74667668 74667769 -122527663 - PB1D9 SINE Alu 0 120 15 4 1154 447 293 28 28 chr1 74667861 74668005 -122527427 - RSINE1 SINE B4 -17 148 5 4 1154 369 164 0 0 chr1 74668397 74668470 -122526962 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1154 328 311 68 95 chr1 74669110 74669373 -122526059 - MER102c DNA MER1_type -6 325 70 4 1154 180 0 0 0 chr1 74669399 74669419 -122526013 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1154 214 278 59 59 chr1 74669420 74669553 -122525879 - MIR SINE MIR -117 151 19 4 1154 414 0 0 0 chr1 74670216 74670262 -122525170 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1154 868 134 30 0 chr1 74670680 74670814 -122524618 + B1_Mus1 SINE Alu 2 139 -9 4 1154 231 61 0 0 chr1 74670814 74670847 -122524585 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 1154 25 0 0 0 chr1 74671129 74671154 -122524278 + AT_rich Low_complexity Low_complexity 1 25 0 4 1154 669 180 70 21 chr1 74671154 74671296 -122524136 + B1_Mur2 SINE Alu 1 149 0 4 1154 276 77 0 0 chr1 74671440 74671479 -122523953 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1154 181 306 0 0 chr1 74672259 74672308 -122523124 + L2a LINE L2 3357 3405 -21 4 1154 603 171 267 22 chr1 74672317 74672497 -122522935 + ID_B1 SINE B4 1 224 0 4 1154 242 229 14 0 chr1 74673294 74673364 -122522068 + GA-rich Low_complexity Low_complexity 1 71 0 4 1154 522 0 0 0 chr1 74673366 74673424 -122522008 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 4 1154 482 186 0 137 chr1 74673436 74673567 -122521865 + B1_Mur1 SINE Alu 5 117 -32 4 1154 368 269 151 67 chr1 74673586 74673825 -122521607 - MTEb LTR MaLR -110 269 11 4 1154 845 168 0 32 chr1 74675351 74675505 -122519927 - B1_Mur4 SINE Alu 0 150 2 4 1154 1447 75 27 0 chr1 74675695 74675882 -122519550 - B2_Mm1t SINE B2 0 193 2 4 1154 315 234 36 17 chr1 74676400 74676519 -122518913 - RLTR13D3 LTR ERVK -42 1072 983 4 1154 235 105 0 0 chr1 74676782 74676820 -122518612 - B2_Mm2 SINE B2 -157 38 1 4 1154 1222 61 0 0 chr1 74676905 74677053 -122518379 - B1_Mus1 SINE Alu 0 148 1 4 1154 355 241 13 0 chr1 74677756 74677835 -122517597 - ID4 SINE ID -3 80 1 4 1154 343 252 3 14 chr1 74678528 74678611 -122516821 + B1F SINE Alu 56 139 -10 4 1154 315 0 0 0 chr1 74678636 74678671 -122516761 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1154 296 283 33 0 chr1 74678794 74678886 -122516546 + PB1D10 SINE Alu 1 95 -22 4 1154 222 146 21 0 chr1 74678928 74678976 -122516456 + T-rich Low_complexity Low_complexity 5 53 0 4 1154 383 122 195 0 chr1 74678976 74679058 -122516374 - B1_Mus2 SINE Alu 0 147 50 4 1154 202 299 15 15 chr1 74679119 74679187 -122516245 + GA-rich Low_complexity Low_complexity 3 70 0 4 1154 371 291 40 13 chr1 74681656 74681806 -122513626 - MIR SINE MIR -107 155 2 4 1154 337 121 60 0 chr1 74683585 74683668 -122511764 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 1154 222 37 0 0 chr1 74683671 74683698 -122511734 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1154 779 169 62 0 chr1 74683698 74683828 -122511604 - B1_Mur4 SINE Alu -11 139 2 4 1154 468 0 0 0 chr1 74683868 74683920 -122511512 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1154 377 209 31 34 chr1 74684044 74684142 -122511290 + PB1 SINE Alu 24 117 -10 4 1154 290 233 117 73 chr1 74684199 74684389 -122511043 - L2a LINE L2 -195 3192 2972 4 1154 332 278 82 0 chr1 74684425 74684522 -122510910 + PB1D10 SINE Alu 13 117 0 4 1154 496 276 48 0 chr1 74684730 74684875 -122510557 + B4A SINE B4 83 234 -58 4 1154 579 243 7 41 chr1 74684906 74685052 -122510380 - B1_Mur1 SINE Alu 0 149 9 4 1154 437 318 52 9 chr1 74685089 74685302 -122510130 - L2a LINE L2 -759 2660 2439 4 1154 333 47 0 0 chr1 74685525 74685568 -122509864 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1154 977 144 14 0 chr1 74685636 74685782 -122509650 - B1_Mus1 SINE Alu 0 148 1 4 1154 219 340 93 0 chr1 74686010 74686107 -122509325 + B4 SINE B4 1 106 -186 4 1154 363 214 39 39 chr1 74686257 74686437 -122508995 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 4 1154 268 171 60 12 chr1 74686417 74686500 -122508932 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1154 272 130 58 0 chr1 74686519 74686588 -122508844 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1154 317 312 108 31 chr1 74686636 74686765 -122508667 - ID_B1 SINE B4 -1 223 85 4 1154 595 235 186 35 chr1 74686830 74687070 -122508362 - B4A SINE B4 -16 276 1 4 1154 599 271 29 12 chr1 74687078 74687250 -122508182 - B4 SINE B4 -68 224 50 4 1154 1275 62 39 22 chr1 74687389 74687569 -122507863 + B2_Mm1t SINE B2 2 184 -9 4 1154 1146 65 0 0 chr1 74687579 74687717 -122507715 + B1_Mus2 SINE Alu 1 138 -9 4 1154 266 0 29 0 chr1 74687717 74687751 -122507681 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1154 693 0 0 0 chr1 74687850 74687927 -122507505 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1154 374 284 60 85 chr1 74687937 74688026 -122507406 - ID_B1 SINE B4 -28 196 114 4 1154 549 0 0 0 chr1 74688026 74688087 -122507345 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 4 1154 374 284 60 85 chr1 74688087 74688197 -122507235 - ID_B1 SINE B4 -111 113 2 4 1154 22 70 0 0 chr1 74688207 74688250 -122507182 + AT_rich Low_complexity Low_complexity 1 43 0 5 1154 443 130 13 0 chr1 74688332 74688409 -122507023 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1154 1063 101 0 7 chr1 74688409 74688558 -122506874 - B1_Mus1 SINE Alu 0 148 1 5 1154 343 303 27 18 chr1 74688723 74688834 -122506598 - Lx7 LINE L1 -395 7301 7190 5 1154 4414 189 99 33 chr1 74688895 74689378 -122506054 - Lx6 LINE L1 -169 7291 6757 5 1154 1163 68 0 0 chr1 74689378 74689525 -122505907 - B1_Mus2 SINE Alu 0 147 1 5 1154 4414 189 99 33 chr1 74689525 74689993 -122505439 - Lx6 LINE L1 -704 6756 6277 5 1154 295 283 87 0 chr1 74690537 74690629 -122504803 - L1MC4 LINE L1 -7 8035 7936 5 1154 384 342 17 0 chr1 74690647 74690767 -122504665 + RSINE1 SINE B4 44 165 0 5 1154 303 28 0 0 chr1 74690794 74690830 -122504602 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1154 2451 237 103 15 chr1 74690831 74691568 -122503864 - MYSERV-int LTR ERVK -415 6135 5334 5 1154 506 249 12 108 chr1 74691568 74691780 -122503652 - RMER4A LTR ERVK -30 555 250 5 1154 364 267 22 11 chr1 74691780 74691871 -122503561 - MYSERV-int LTR ERVK -1424 5126 5035 5 1154 3414 84 145 14 chr1 74691871 74692387 -122503045 + MT2B2 LTR ERVL 1 584 0 5 1154 9154 120 19 46 chr1 74692387 74692458 -122502974 + MERVL-int LTR ERVL 1 57 -5428 5 1154 1142 72 0 0 chr1 74692458 74692597 -122502835 + B1_Mm SINE Alu 1 139 -8 5 1154 9154 120 19 46 chr1 74692597 74693979 -122501453 + MERVL-int LTR ERVL 58 1415 -4070 5 1154 5346 97 3 10 chr1 74693968 74694337 -122501095 + MERVL-int LTR ERVL 4631 5000 -485 5 1154 4747 124 46 63 chr1 74694337 74695259 -122500173 - RMER17A2 LTR ERVK 0 906 1 5 1154 5346 97 3 10 chr1 74695259 74695616 -122499816 + MERVL-int LTR ERVL 5001 5352 -133 5 1154 346 97 153 0 chr1 74695666 74695738 -122499694 + MERVL-int LTR ERVL 5547 5629 -132 5 1154 326 154 12 37 chr1 74695738 74695819 -122499613 + ORR1A3-int LTR MaLR 567 645 -1318 5 1154 1071 174 86 10 chr1 74695883 74696092 -122499340 + URR1A DNA MER1_type 1 225 -1 5 1154 1064 249 121 82 chr1 74696093 74696511 -122498921 - MT2A LTR ERVL -16 517 74 5 1154 1221 102 43 5 chr1 74696511 74696699 -122498733 + B2_Mm2 SINE B2 1 195 0 5 1154 1064 249 121 82 chr1 74696699 74696778 -122498654 - MT2A LTR ERVL -460 73 1 5 1154 992 97 13 0 chr1 74696941 74697095 -122498337 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 5 1154 776 168 30 0 chr1 74697111 74697242 -122498190 - B1_Mur3 SINE Alu -9 140 6 5 1154 522 253 57 0 chr1 74697317 74697453 -122497979 - B1F1 SINE Alu -1 148 6 5 1154 211 315 0 14 chr1 74697388 74697462 -122497970 - B4A SINE B4 -138 154 82 5 1154 408 232 269 59 chr1 74697599 74697810 -122497622 - L1MC3 LINE L1 -804 6981 6711 5 1154 1659 36 0 0 chr1 74697810 74698002 -122497430 - B2_Mm1a SINE B2 0 193 2 5 1154 408 232 269 59 chr1 74698002 74698046 -122497386 - L1MC3 LINE L1 -1075 6710 6672 5 1154 222 37 0 0 chr1 74698061 74698088 -122497344 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 5 1154 312 224 0 43 chr1 74698094 74698164 -122497268 - B1_Mur1 SINE Alu -10 139 73 5 1154 439 339 11 45 chr1 74698105 74698281 -122497151 - ID_B1 SINE B4 -47 177 8 5 1154 601 250 34 102 chr1 74698362 74698511 -122496921 - B4A SINE B4 -47 245 103 5 1154 3641 130 151 14 chr1 74698511 74699174 -122496258 - RMER6A LTR ERVK 0 756 3 5 1154 601 250 34 102 chr1 74699174 74699229 -122496203 - B4A SINE B4 -190 102 55 5 1154 723 180 62 0 chr1 74699265 74699393 -122496039 - B1_Mus2 SINE Alu -10 137 2 5 1154 549 272 16 0 chr1 74699617 74699742 -122495690 - RSINE1 SINE B4 -37 128 2 5 1154 225 0 0 0 chr1 74699775 74699800 -122495632 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1154 524 289 20 13 chr1 74699843 74699994 -122495438 - B3A SINE B2 -37 161 10 5 1154 3268 19 0 0 chr1 74699994 74700361 -122495071 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1154 56945 22 11 7 chr1 74700361 74706806 -122488626 - IAPEz-int LTR ERVK 0 6481 8 5 1154 3268 19 0 0 chr1 74706806 74707173 -122488259 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1154 320 253 91 100 chr1 74707199 74707419 -122488013 - L1MC5 LINE L1 -497 7464 7247 5 1154 669 210 7 7 chr1 74707525 74707669 -122487763 - B1_Mus1 SINE Alu -2 146 3 5 1154 231 250 0 0 chr1 74708169 74708217 -122487215 + C-rich Low_complexity Low_complexity 1 48 0 5 1154 527 94 125 0 chr1 74709607 74709703 -122485729 - B1_Mus2 SINE Alu 0 147 40 5 1154 240 300 0 28 chr1 74709715 74709787 -122485645 - ID4_ SINE ID 0 83 14 5 1154 216 0 0 0 chr1 74709905 74709929 -122485503 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1154 627 167 75 0 chr1 74709929 74710049 -122485383 - B1_Mus2 SINE Alu -10 137 9 5 1154 238 188 154 15 chr1 74710470 74710535 -122484897 - B1_Mur4 SINE Alu -55 95 22 5 1154 251 261 0 92 chr1 74710496 74710572 -122484860 - B4 SINE B4 -148 144 76 5 1154 1364 90 10 16 chr1 74710733 74710925 -122484507 + B2_Mm1a SINE B2 3 193 0 5 1154 223 194 0 0 chr1 74711000 74711036 -122484396 + B3 SINE B2 20 55 -161 5 1155 383 193 35 35 chr1 74711056 74711142 -122484290 + B3 SINE B2 129 214 -2 5 1155 265 263 41 31 chr1 74711286 74711384 -122484048 - PB1D7 SINE Alu -19 101 3 5 1155 256 229 27 67 chr1 74711476 74711551 -122483881 + B1F1 SINE Alu 8 79 -70 5 1155 342 323 75 8 chr1 74711580 74711714 -122483718 + RSINE1 SINE B4 15 157 -8 5 1155 22 35 0 0 chr1 74711732 74711761 -122483671 + AT_rich Low_complexity Low_complexity 1 29 0 5 1155 933 227 115 25 chr1 74711791 74712083 -122483349 - Charlie1a DNA MER1_type -763 692 372 5 1155 328 264 67 130 chr1 74712083 74712322 -122483110 - ID_B1 SINE B4 0 224 1 5 1155 933 227 115 25 chr1 74712322 74712350 -122483082 - Charlie1a DNA MER1_type -1084 371 344 5 1155 562 325 5 20 chr1 74712444 74712645 -122482787 - Charlie1a DNA MER1_type -1257 198 1 5 1155 180 0 0 0 chr1 74712817 74712837 -122482595 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1155 491 250 106 111 chr1 74712944 74713142 -122482290 + B3A SINE B2 2 198 0 5 1155 270 0 0 0 chr1 74713566 74713596 -122481836 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1155 254 305 47 78 chr1 74713691 74713819 -122481613 - PB1 SINE Alu -2 125 2 5 1155 318 277 133 71 chr1 74713928 74714138 -122481294 + B4 SINE B4 48 270 -22 5 1155 324 0 0 0 chr1 74714195 74714231 -122481201 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1155 368 230 39 20 chr1 74714497 74714599 -122480833 - PB1D10 SINE Alu -5 112 9 5 1155 373 288 249 20 chr1 74715021 74715445 -122479987 - L1M5 LINE L1 -1210 4936 4412 5 1155 510 237 110 91 chr1 74715729 74715800 -122479632 - ID_B1 SINE B4 -6 218 161 5 1155 889 213 63 19 chr1 74715800 74716006 -122479426 - B3 SINE B2 0 216 2 5 1155 510 237 110 91 chr1 74716006 74716143 -122479289 - ID_B1 SINE B4 -64 160 6 5 1155 2562 86 0 0 chr1 74716260 74716587 -122478845 - ORR1A2 LTR MaLR 0 327 1 5 1155 415 297 78 91 chr1 74716653 74716949 -122478483 + B4 SINE B4 1 292 0 5 1155 541 260 40 27 chr1 74717125 74717275 -122478157 - RSINE1 SINE B4 0 165 14 5 1155 450 283 58 7 chr1 74717526 74717665 -122477767 - L1MC4a LINE L1 -998 6884 6739 5 1155 1352 95 11 0 chr1 74717825 74718015 -122477417 - B2_Mm1t SINE B2 0 193 2 5 1155 639 310 0 0 chr1 74718042 74718200 -122477232 - RSINE1 SINE B4 0 165 8 5 1155 592 207 62 28 chr1 74718300 74718444 -122476988 - B1F SINE Alu 0 149 1 5 1155 198 0 0 0 chr1 74718506 74718528 -122476904 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 1155 1173 81 0 6 chr1 74718528 74718690 -122476742 - B2_Mm2 SINE B2 -33 162 2 5 1155 1595 193 93 21 chr1 74718797 74719183 -122476249 - MTD LTR MaLR 0 419 6 5 1155 393 22 0 0 chr1 74720135 74720181 -122475251 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1155 1358 69 11 0 chr1 74720205 74720379 -122475053 + B2_Mm1t SINE B2 2 177 -16 5 1155 1244 41 0 0 chr1 74720379 74720526 -122474906 + B1_Mus2 SINE Alu 1 147 0 5 1155 888 217 89 20 chr1 74720603 74720805 -122474627 - B3 SINE B2 0 216 1 5 1155 1247 21 0 14 chr1 74720840 74720987 -122474445 - B1_Mm SINE Alu -2 145 1 5 1155 30 0 0 0 chr1 74721048 74721078 -122474354 + AT_rich Low_complexity Low_complexity 1 30 0 5 1155 254 128 0 41 chr1 74721109 74721158 -122474274 - B2_Mm2 SINE B2 -101 94 48 5 1155 1249 124 11 0 chr1 74721225 74721402 -122474030 - B2_Mm1t SINE B2 -14 179 1 5 1155 287 115 58 0 chr1 74721424 74721476 -122473956 - B3 SINE B2 -10 206 152 5 1155 649 231 28 7 chr1 74721497 74721641 -122473791 - B1_Mur1 SINE Alu -2 147 1 5 1155 333 312 97 7 chr1 74721655 74721668 -122473764 - ID_B1 SINE B4 -2 222 161 5 1155 508 211 87 9 chr1 74721668 74721783 -122473649 - B1_Mur1 SINE Alu -25 124 1 5 1155 333 312 97 7 chr1 74721783 74721800 -122473632 - ID_B1 SINE B4 -2 160 65 5 1155 1202 54 0 13 chr1 74722149 74722299 -122473133 - B1_Mus1 SINE Alu 0 148 1 5 1155 741 144 19 58 chr1 74722305 74722460 -122472972 - B1_Mur3 SINE Alu 0 149 1 5 1155 1247 75 63 0 chr1 74723013 74723187 -122472245 + B2_Mm2 SINE B2 1 185 -10 5 1155 649 272 0 0 chr1 74723445 74723592 -122471840 + B1_Mur2 SINE Alu 3 149 0 5 1155 483 194 0 0 chr1 74725012 74725110 -122470322 + T-rich Low_complexity Low_complexity 1 98 0 5 1155 206 213 16 0 chr1 74725143 74725159 -122470273 + (CA)n Simple_repeat Simple_repeat 2 18 0 5 1155 180 0 0 0 chr1 74725159 74725179 -122470253 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1155 206 213 16 0 chr1 74725179 74725223 -122470209 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1155 344 268 20 10 chr1 74727224 74727322 -122468110 + Cheshire DNA MER1_type 173 271 -2149 5 1155 702 211 21 0 chr1 74728538 74728680 -122466752 - B1_Mur2 SINE Alu 0 149 5 5 1155 274 338 0 0 chr1 74728793 74728867 -122466565 + RSINE1 SINE B4 4 77 -88 5 1155 306 0 0 0 chr1 74728908 74728942 -122466490 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1155 26 0 0 0 chr1 74728945 74728971 -122466461 + AT_rich Low_complexity Low_complexity 1 26 0 5 1155 1121 110 18 0 chr1 74729008 74729172 -122466260 - B2_Mm2 SINE B2 -14 181 15 5 1155 333 47 0 0 chr1 74729195 74729238 -122466194 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1155 372 43 0 0 chr1 74729238 74729283 -122466149 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1155 186 43 0 0 chr1 74729663 74729686 -122465746 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1155 1105 36 7 7 chr1 74729686 74729824 -122465608 - B1_Mus1 SINE Alu -10 138 1 6 1155 1557 47 21 0 chr1 74729855 74730046 -122465386 + B2_Mm2 SINE B2 1 195 0 6 1155 321 26 0 0 chr1 74730049 74730087 -122465345 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1155 904 197 98 5 chr1 74730123 74730317 -122465115 - B3 SINE B2 -3 213 2 6 1155 1011 92 28 0 chr1 74730339 74730481 -122464951 - B1_Mus2 SINE Alu 0 147 2 6 1155 1226 71 48 27 chr1 74730517 74730704 -122464728 - B2_Mm2 SINE B2 -2 193 3 6 1155 594 209 35 0 chr1 74730994 74731109 -122464323 - B3 SINE B2 -97 119 1 6 1155 235 167 24 0 chr1 74731118 74731160 -122464272 - B1_Mur1 SINE Alu -7 142 100 6 1155 526 271 43 12 chr1 74731257 74731418 -122464014 - L1MD LINE L1 -476 5766 5601 6 1155 324 259 63 27 chr1 74731483 74731594 -122463838 + PB1D10 SINE Alu 2 116 -1 6 1155 1277 248 112 3 chr1 74733296 74733652 -122461780 - MTD LTR MaLR 0 419 25 6 1155 565 165 0 0 chr1 74735388 74735485 -122459947 - ORR1D1 LTR MaLR -2 372 276 6 1155 595 191 9 0 chr1 74735517 74735632 -122459800 - ORR1D1 LTR MaLR -256 118 3 6 1155 269 275 75 21 chr1 74735730 74735823 -122459609 - PB1D10 SINE Alu -10 107 10 6 1155 286 318 12 0 chr1 74735748 74735833 -122459599 - ID_B1 SINE B4 -59 165 80 6 1155 521 189 81 0 chr1 74736278 74736389 -122459043 - B1_Mus2 SINE Alu -21 126 7 6 1155 350 230 147 106 chr1 74737947 74738117 -122457315 - RLTR19-int LTR ERVK -3100 3037 2861 6 1155 359 266 26 11 chr1 74738339 74738480 -122456952 - MYSERV6-int LTR ERVK -1639 7320 7249 6 1155 2587 120 189 10 chr1 74738893 74739389 -122456043 - RMER4B LTR ERVK 0 585 1 6 1155 1544 32 43 0 chr1 74739489 74739674 -122455758 - B2_Mm1a SINE B2 0 193 1 6 1155 1100 64 43 0 chr1 74739719 74739859 -122455573 + B1_Mus2 SINE Alu 2 147 0 6 1155 180 0 0 0 chr1 74739859 74739879 -122455553 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1155 323 167 33 0 chr1 74741311 74741371 -122454061 - RSINE1 SINE B4 -100 65 4 6 1155 291 140 0 0 chr1 74741381 74741431 -122454001 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 6 1155 231 36 0 0 chr1 74741443 74741471 -122453961 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6 1155 258 79 0 0 chr1 74741496 74741534 -122453898 - B2_Mm2 SINE B2 -94 101 64 6 1155 1200 93 58 0 chr1 74741554 74741726 -122453706 - B2_Mm2 SINE B2 -13 182 1 6 1155 406 267 73 37 chr1 74741764 74741900 -122453532 + B1F SINE Alu 9 149 0 6 1155 256 300 0 32 chr1 74746446 74746508 -122448924 + PB1D9 SINE Alu 1 60 -60 6 1155 532 281 75 31 chr1 74747580 74747808 -122447624 + MER2 DNA MER2_type 108 345 0 6 1155 577 235 211 25 chr1 74748111 74748395 -122447037 + L1ME1 LINE L1 5837 6173 -6 6 1155 279 218 37 37 chr1 74748402 74748483 -122446949 - ID4 SINE ID -1 82 2 6 1155 342 0 0 0 chr1 74748501 74748539 -122446893 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1155 717 271 124 21 chr1 74748941 74749231 -122446201 - L1MB5 LINE L1 -14 6160 5841 6 1155 664 181 89 34 chr1 74749407 74749586 -122445846 - B3A SINE B2 -9 186 2 6 1155 498 240 10 0 chr1 74749602 74749702 -122445730 - PB1D7 SINE Alu -19 101 1 6 1155 868 263 108 57 chr1 74749704 74750270 -122445162 - L1MA4A LINE L1 -395 5908 5303 6 1155 711 211 49 0 chr1 74751025 74751167 -122444265 + B1F2 SINE Alu 1 149 0 6 1155 259 212 12 12 chr1 74751234 74751315 -122444117 + C-rich Low_complexity Low_complexity 5 85 0 6 1155 229 98 0 89 chr1 74751711 74751756 -122443676 - Lx3B LINE L1 -4 6969 6929 6 1155 2881 159 29 12 chr1 74752323 74752837 -122442595 + RLTR28 LTR ERVL 1 523 -1 6 1155 1180 133 109 38 chr1 74752891 74753102 -122442330 + URR1A DNA MER1_type 1 226 0 6 1155 288 228 98 22 chr1 74753194 74753327 -122442105 + L1_Mur3 LINE L1 4713 4856 -1021 6 1155 409 220 83 17 chr1 74753323 74753443 -122441989 + L1_Mm LINE L1 4423 4555 -1328 6 1155 268 376 43 11 chr1 74753460 74753648 -122441784 + L1M2 LINE L1 4786 4979 -1164 6 1155 690 236 42 70 chr1 74753656 74753870 -122441562 + B3 SINE B2 2 209 -7 6 1155 1285 46 12 0 chr1 74753901 74754074 -122441358 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 6 1155 833 134 0 0 chr1 74754077 74754204 -122441228 - B1_Mus1 SINE Alu -15 133 7 6 1155 334 299 143 6 chr1 74754220 74754388 -122441044 + L1M2 LINE L1 5081 5271 -872 6 1155 336 24 0 0 chr1 74754426 74754467 -122440965 + (CTAA)n Simple_repeat Simple_repeat 3 43 0 6 1155 587 201 229 21 chr1 74754467 74754655 -122440777 + ORR1D1 LTR MaLR 148 374 0 6 1155 10424 87 1 4 chr1 74755052 74756215 -122439217 + L1_Mus1 LINE L1 4483 5644 -239 6 1155 1816 166 19 83 chr1 74756215 74756635 -122438797 + RLTR9C LTR ERVK 1 393 0 6 1155 10424 42 6 18 chr1 74756635 74756870 -122438562 + L1_Mus1 LINE L1 5645 5877 -690 6 1155 1432 38 0 106 chr1 74756870 74757077 -122438355 + B2_Mm1a SINE B2 2 186 -7 6 1155 8135 42 6 18 chr1 74757077 74757772 -122437660 + L1_Mus1 LINE L1 5878 6567 0 6 1155 1085 126 66 0 chr1 74757785 74757967 -122437465 + B2_Mm2 SINE B2 2 195 0 6 1155 180 0 0 0 chr1 74758078 74758098 -122437334 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1155 271 297 14 0 chr1 74758246 74758320 -122437112 - ID4_ SINE ID -8 75 1 6 1155 558 245 87 105 chr1 74758379 74758598 -122436834 - B3 SINE B2 0 216 2 6 1155 1240 62 68 78 chr1 74758652 74758843 -122436589 - B2_Mm1t SINE B2 -3 190 2 6 1155 730 159 53 0 chr1 74758843 74758975 -122436457 + B1_Mur3 SINE Alu 11 149 0 6 1155 325 194 14 0 chr1 74759164 74759236 -122436196 - B3 SINE B2 -7 209 137 6 1155 816 197 14 0 chr1 74759348 74759495 -122435937 - B1_Mur1 SINE Alu 0 149 1 6 1155 240 188 146 24 chr1 74759504 74759586 -122435846 + PB1D10 SINE Alu 26 117 0 6 1155 427 259 120 49 chr1 74761110 74761293 -122434139 + B3A SINE B2 1 196 -2 6 1155 477 0 0 0 chr1 74761301 74761354 -122434078 + (CAAG)n Simple_repeat Simple_repeat 2 54 0 6 1155 467 212 81 41 chr1 74761357 74761480 -122433952 + B1_Mur1 SINE Alu 1 128 -21 6 1155 286 107 36 0 chr1 74761485 74761541 -122433891 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 6 1155 383 199 37 37 chr1 74761808 74761926 -122433506 - PB1D10 SINE Alu 0 120 3 6 1155 21 36 0 0 chr1 74761932 74761960 -122433472 + AT_rich Low_complexity Low_complexity 1 28 0 6 1155 459 95 0 0 chr1 74761961 74762035 -122433397 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1155 270 308 175 0 chr1 74762037 74762157 -122433275 - B3A SINE B2 -56 142 2 6 1155 515 157 8 77 chr1 74762703 74762820 -122432612 - B1_Mus2 SINE Alu -36 111 3 6 1155 22 0 0 0 chr1 74762830 74762852 -122432580 + AT_rich Low_complexity Low_complexity 1 22 0 6 1155 328 270 93 21 chr1 74763011 74763217 -122432215 - MLT-int LTR MaLR -5 1730 1325 6 1155 975 56 0 0 chr1 74763454 74763580 -122431852 + (TTC)n Simple_repeat Simple_repeat 2 127 0 6 1155 410 281 30 18 chr1 74763602 74763792 -122431640 + B4A SINE B4 81 267 -25 6 1155 342 0 0 0 chr1 74763804 74763842 -122431590 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1155 1465 29 63 0 chr1 74764011 74764185 -122431247 - B2_Mm1a SINE B2 -7 186 2 6 1155 30 27 0 0 chr1 74764203 74764240 -122431192 + AT_rich Low_complexity Low_complexity 1 37 0 6 1155 362 250 0 0 chr1 74764268 74764348 -122431084 - B3A SINE B2 -118 80 1 6 1155 702 219 179 5 chr1 74764391 74764575 -122430857 - B3 SINE B2 0 216 1 6 1155 277 217 0 16 chr1 74765092 74765153 -122430279 - ID_B1 SINE B4 -81 143 84 6 1155 359 60 0 0 chr1 74765104 74765154 -122430278 - B1_Mus1 SINE Alu -97 51 2 6 1155 232 294 44 0 chr1 74765238 74765306 -122430126 + ID_B1 SINE B4 24 94 -130 6 1155 317 259 65 103 chr1 74765420 74765575 -122429857 - B1F1 SINE Alu 0 149 1 6 1155 259 278 72 0 chr1 74765588 74765685 -122429747 - PB1 SINE Alu -7 120 17 6 1155 189 0 0 0 chr1 74766393 74766414 -122429018 + (TTA)n Simple_repeat Simple_repeat 2 22 0 6 1155 1269 34 0 0 chr1 74766414 74766561 -122428871 - B1_Mm SINE Alu 0 147 1 6 1155 342 0 0 0 chr1 74766804 74766842 -122428590 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1155 224 286 0 0 chr1 74766936 74767013 -122428419 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 6 1155 423 0 0 0 chr1 74767212 74767259 -122428173 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 6 1155 951 141 0 0 chr1 74767259 74767394 -122428038 - B1_Mus2 SINE Alu -9 138 4 6 1155 2146 179 19 68 chr1 74767396 74767881 -122427551 + RMER6B LTR ERVK 1 461 0 6 1155 254 312 52 0 chr1 74767965 74768061 -122427371 - LTR75 LTR ERVL -405 157 57 6 1155 436 138 192 0 chr1 74768363 74768484 -122426948 + B1_Mur2 SINE Alu 2 146 -1 6 1155 800 74 0 0 chr1 74769527 74769635 -122425797 - B1_Mur4 SINE Alu -8 142 35 6 1155 239 219 92 40 chr1 74769577 74769653 -122425779 - 4.5SRNA scRNA scRNA -8 86 7 6 1155 489 217 0 0 chr1 74769690 74769782 -122425650 - PB1D10 SINE Alu -23 94 3 6 1155 900 159 0 7 chr1 74770024 74770170 -122425262 - B1_Mus2 SINE Alu -2 145 1 6 1155 435 261 70 35 chr1 74770276 74770419 -122425013 + Lx8 LINE L1 7185 7332 -141 6 1155 983 215 48 5 chr1 74770420 74770626 -122424806 - B3 SINE B2 0 216 2 6 1155 529 29 14 0 chr1 74770670 74770740 -122424692 + B1_Mus2 SINE Alu 76 146 -1 6 1155 1073 119 46 46 chr1 74770852 74771046 -122424386 - B2_Mm2 SINE B2 0 195 2 7 1155 243 0 0 0 chr1 74771056 74771083 -122424349 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1155 1195 55 7 0 chr1 74771083 74771228 -122424204 - B1_Mus1 SINE Alu -2 146 1 7 1155 454 179 0 0 chr1 74771253 74771331 -122424101 - B3 SINE B2 0 216 139 7 1155 216 0 0 0 chr1 74771335 74771359 -122424073 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 7 1155 594 227 194 31 chr1 74771379 74771570 -122423862 + ID_B1 SINE B4 1 222 -2 7 1155 390 147 0 0 chr1 74771572 74771640 -122423792 + (GGA)n Simple_repeat Simple_repeat 3 70 0 7 1155 244 310 0 0 chr1 74771777 74771848 -122423584 + CT-rich Low_complexity Low_complexity 1 71 0 7 1155 228 136 50 17 chr1 74771870 74771930 -122423502 + C-rich Low_complexity Low_complexity 5 66 0 7 1155 787 199 14 7 chr1 74771940 74772082 -122423350 - B1_Mur1 SINE Alu -5 144 2 7 1155 254 262 59 12 chr1 74772853 74772938 -122422494 - MER51-int LTR ERV1 -6256 1560 1472 7 1155 343 219 81 0 chr1 74773269 74773364 -122422068 - B1F SINE Alu -2 115 9 7 1155 385 289 184 44 chr1 74773421 74773860 -122421572 - L1M5 LINE L1 -1868 5917 5417 7 1155 252 0 0 0 chr1 74773861 74773889 -122421543 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1155 1388 156 94 22 chr1 74773969 74774245 -122421187 - Lx5 LINE L1 0 7050 6755 7 1155 1467 68 16 10 chr1 74774246 74774439 -122420993 + B2_Mm2 SINE B2 2 195 0 7 1155 1192 49 21 0 chr1 74774457 74774601 -122420831 + B1_Mus1 SINE Alu 2 148 0 7 1155 217 0 75 50 chr1 74774603 74774643 -122420789 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1155 1710 146 11 0 chr1 74774643 74774910 -122420522 - Lx5 LINE L1 -286 6764 6495 7 1155 222 37 0 0 chr1 74775226 74775253 -122420179 + (GCTG)n Simple_repeat Simple_repeat 2 28 0 7 1155 761 210 101 20 chr1 74775528 74775727 -122419705 - B3 SINE B2 -1 215 1 7 1155 425 203 0 0 chr1 74775911 74775985 -122419447 - PB1D10 SINE Alu -23 94 21 7 1155 358 314 78 22 chr1 74776158 74776337 -122419095 - B4A SINE B4 -102 190 2 7 1155 21 36 0 0 chr1 74776637 74776665 -122418767 + AT_rich Low_complexity Low_complexity 1 28 0 7 1155 524 158 142 50 chr1 74777396 74777516 -122417916 + B1_Mur4 SINE Alu 7 137 -13 7 1155 243 0 0 0 chr1 74777663 74777690 -122417742 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1155 294 29 0 0 chr1 74777912 74777947 -122417485 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1155 219 36 0 0 chr1 74777948 74777976 -122417456 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1155 456 175 194 0 chr1 74777976 74778079 -122417353 - RSINE1 SINE B4 -41 124 2 7 1155 24 0 0 0 chr1 74778079 74778103 -122417329 + AT_rich Low_complexity Low_complexity 1 24 0 7 1155 255 253 0 60 chr1 74778985 74779069 -122416363 - ID4_ SINE ID -4 79 1 7 1155 192 311 61 33 chr1 74779590 74779705 -122415727 - MIR SINE MIR -36 232 113 7 1155 503 189 32 0 chr1 74780158 74780253 -122415179 + PB1D10 SINE Alu 6 103 -14 7 1155 273 57 0 0 chr1 74780253 74780288 -122415144 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 7 1155 261 0 0 0 chr1 74780291 74780320 -122415112 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 7 1155 689 217 133 0 chr1 74780636 74780816 -122414616 - B3 SINE B2 -12 204 1 7 1155 669 226 56 0 chr1 74780916 74781059 -122414373 - ID_B1 SINE B4 -1 223 77 7 1155 1120 75 0 0 chr1 74781384 74781531 -122413901 - B1_Mus1 SINE Alu 0 148 2 7 1155 443 321 0 29 chr1 74781560 74781698 -122413734 - ID_B1 SINE B4 -13 211 78 7 1155 22 0 0 0 chr1 74784441 74784463 -122410969 + AT_rich Low_complexity Low_complexity 1 22 0 7 1155 270 236 0 0 chr1 74784716 74784771 -122410661 + PB1 SINE Alu 22 76 -51 7 1155 668 231 7 20 chr1 74784901 74785047 -122410385 + B1_Mur1 SINE Alu 1 144 -5 7 1155 234 150 0 0 chr1 74785055 74785095 -122410337 + (GGA)n Simple_repeat Simple_repeat 3 42 0 7 1155 331 323 83 103 chr1 74785109 74785399 -122410033 + B4 SINE B4 8 291 -1 7 1155 292 336 70 14 chr1 74785557 74785699 -122409733 + MamGypLTR1c LTR Gypsy 643 792 -11 7 1155 829 110 0 14 chr1 74785930 74786068 -122409364 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 7 1155 926 126 174 17 chr1 74788412 74788590 -122406842 - B3 SINE B2 -8 208 3 7 1155 576 0 0 0 chr1 74788629 74788693 -122406739 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1155 672 204 15 15 chr1 74788697 74788831 -122406601 - RSINE1 SINE B4 -21 144 11 7 1155 728 194 0 0 chr1 74789044 74789168 -122406264 + RSINE1 SINE B4 3 126 -39 7 1155 180 246 0 0 chr1 74789193 74789262 -122406170 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1155 360 0 0 0 chr1 74789270 74789310 -122406122 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 7 1155 288 0 0 0 chr1 74789343 74789375 -122406057 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1155 239 273 147 29 chr1 74789384 74789486 -122405946 - RSINE1 SINE B4 -47 118 5 7 1155 926 70 192 0 chr1 74789679 74789835 -122405597 + B2_Mm2 SINE B2 1 186 -9 7 1155 336 204 16 35 chr1 74789912 74790176 -122405256 + (TG)n Simple_repeat Simple_repeat 1 258 0 7 1155 656 270 79 36 chr1 74790176 74790456 -122404976 - B4A SINE B4 0 292 1 7 1155 287 297 109 0 chr1 74790688 74790816 -122404616 + B1F SINE Alu 5 146 -3 7 1155 268 254 17 0 chr1 74790835 74790894 -122404538 - MIRm SINE MIR -122 154 95 7 1155 494 331 7 0 chr1 74791590 74791741 -122403691 + RSINE1 SINE B4 14 165 0 7 1155 437 50 0 16 chr1 74791800 74791861 -122403571 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1155 257 231 15 30 chr1 74792931 74792998 -122402434 + CT-rich Low_complexity Low_complexity 2 67 0 7 1155 201 74 0 0 chr1 74793044 74793071 -122402361 + (TATG)n Simple_repeat Simple_repeat 4 30 0 7 1155 248 307 10 83 chr1 74793082 74793096 -122402336 - MT2B2 LTR ERVL -333 251 210 7 1155 362 203 0 0 chr1 74793096 74793165 -122402267 - PB1D10 SINE Alu -37 80 12 7 1155 257 352 34 0 chr1 74793097 74793185 -122402247 - B4 SINE B4 -125 167 77 7 1155 248 307 10 83 chr1 74793165 74793178 -122402254 - MT2B2 LTR ERVL -333 209 163 7 1155 182 322 17 0 chr1 74793434 74793493 -122401939 - MIRc SINE MIR -78 190 131 7 1155 270 397 17 28 chr1 74794681 74794860 -122400572 - MIRc SINE MIR -37 231 55 7 1155 592 244 210 40 chr1 74796620 74796868 -122398564 + B4A SINE B4 1 290 -2 7 1155 387 0 0 0 chr1 74796869 74796912 -122398520 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1155 339 25 0 0 chr1 74796919 74796959 -122398473 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1155 420 367 77 13 chr1 74797014 74797326 -122398106 - MLT1J LTR MaLR -180 332 1 7 1155 220 258 0 31 chr1 74798054 74798118 -122397314 + GA-rich Low_complexity Low_complexity 5 66 0 7 1155 971 163 66 0 chr1 74798121 74798317 -122397115 + ID_B1 SINE B4 2 210 -14 7 1155 450 0 0 0 chr1 74798319 74798369 -122397063 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1155 1322 128 13 27 chr1 74798431 74798655 -122396777 - URR1B DNA MER1_type -4 221 1 7 1155 326 339 54 32 chr1 74799068 74799142 -122396290 + MLT1J-int LTR MaLR 1032 1109 -278 7 1155 1266 88 33 0 chr1 74799142 74799323 -122396109 - B2_Mm2 SINE B2 -8 187 1 7 1155 326 339 54 32 chr1 74799323 74799434 -122395998 + MLT1J-int LTR MaLR 1110 1221 -166 7 1155 419 280 67 17 chr1 74799514 74799676 -122395756 + MLT1J LTR MaLR 27 229 -283 7 1155 390 243 48 19 chr1 74799793 74799898 -122395534 - MLT1A1 LTR MaLR -1 407 300 7 1155 342 321 20 54 chr1 74800349 74800497 -122394935 - MIRb SINE MIR -23 245 103 7 1155 262 30 0 0 chr1 74800778 74800811 -122394621 + U2 snRNA snRNA 1 33 -155 7 1155 476 87 11 32 chr1 74800833 74800928 -122394504 + (CCCTG)n Simple_repeat Simple_repeat 3 95 0 7 1155 282 264 56 0 chr1 74801716 74801788 -122393644 + RSINE1 SINE B4 53 128 -37 7 1155 341 104 30 0 chr1 74801798 74801865 -122393567 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 7 1155 228 254 53 80 chr1 74801945 74802095 -122393337 + YREP_Mm Unknown Unknown 151 296 -1516 7 1155 868 108 16 0 chr1 74801977 74802106 -122393326 - B1_Mur4 SINE Alu -9 141 11 7 1155 988 134 156 0 chr1 74802166 74802352 -122393080 + B3 SINE B2 2 216 0 7 1155 1127 83 53 0 chr1 74802381 74802550 -122392882 + B2_Mm1t SINE B2 2 179 -14 7 1155 25 51 0 0 chr1 74802562 74802601 -122392831 + AT_rich Low_complexity Low_complexity 1 39 0 7 1155 618 324 42 102 chr1 74802610 74802964 -122392468 + ORR1E LTR MaLR 25 357 -2 7 1155 278 250 210 40 chr1 74802968 74803068 -122392364 + PB1D10 SINE Alu 1 117 0 7 1155 231 339 0 0 chr1 74803080 74803142 -122392290 + ID4 SINE ID 12 73 -10 7 1155 330 238 0 0 chr1 74803168 74803231 -122392201 + ID4_ SINE ID 3 65 -18 7 1155 22 0 0 0 chr1 74803259 74803281 -122392151 + AT_rich Low_complexity Low_complexity 1 22 0 7 1155 1179 46 0 0 chr1 74803375 74803526 -122391906 + B2_Mm2 SINE B2 2 152 -43 7 1155 1221 59 0 23 chr1 74803526 74803539 -122391893 - B2_Mm1a SINE B2 -23 170 161 7 1155 180 0 0 0 chr1 74803539 74803559 -122391873 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 7 1155 1221 59 0 23 chr1 74803559 74803718 -122391714 - B2_Mm1a SINE B2 -33 160 2 7 1155 33 25 0 0 chr1 74803725 74803765 -122391667 + AT_rich Low_complexity Low_complexity 1 40 0 7 1155 3010 116 25 21 chr1 74803994 74804470 -122390962 - RMER2 LTR ERV1 0 567 90 7 1155 1054 114 68 6 chr1 74804774 74804950 -122390482 + B2_Mm2 SINE B2 2 188 -7 7 1155 290 344 17 35 chr1 74805223 74805357 -122390075 + MIRb SINE MIR 76 216 -46 7 1155 690 223 34 0 chr1 74805405 74805461 -122389971 + ID SINE ID 25 85 -139 8 1155 304 250 32 104 chr1 74805461 74805574 -122389858 + PB1D10 SINE Alu 1 106 -11 8 1155 230 0 33 0 chr1 74805574 74805604 -122389828 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 8 1155 304 250 32 104 chr1 74805604 74805615 -122389817 + PB1D10 SINE Alu 107 116 -1 8 1155 490 219 10 0 chr1 74805636 74805732 -122389700 + B1_Mus1 SINE Alu 1 97 -51 8 1155 690 198 11 6 chr1 74805751 74805929 -122389503 + GA-rich Low_complexity Low_complexity 2 180 0 8 1155 425 184 0 0 chr1 74807174 74807250 -122388182 + B3 SINE B2 1 76 -140 8 1155 662 208 0 0 chr1 74807248 74807368 -122388064 + ID_B1 SINE B4 103 222 -2 8 1155 860 189 0 7 chr1 74807407 74807556 -122387876 - B1_Mur2 SINE Alu 0 149 2 8 1155 696 222 117 10 chr1 74809011 74809207 -122386225 + ID_B1 SINE B4 3 219 -5 8 1155 540 0 0 0 chr1 74809308 74809368 -122386064 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1155 441 0 0 0 chr1 74809368 74809416 -122386016 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1155 189 0 0 0 chr1 74809769 74809790 -122385642 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1155 212 339 138 44 chr1 74810624 74811081 -122384351 + L2 LINE L2 2091 2590 -829 8 1155 180 388 8 37 chr1 74811178 74811312 -122384120 + L2 LINE L2 2734 2863 -556 8 1155 1114 137 90 33 chr1 74811483 74811694 -122383738 + URR1B DNA MER1_type 1 223 -2 8 1155 304 260 50 64 chr1 74812339 74812479 -122382953 + Tigger5 DNA MER2_type 177 314 -2092 8 1155 266 287 240 20 chr1 74812486 74812632 -122382800 + Tigger5 DNA MER2_type 2156 2333 -73 8 1155 765 57 0 9 chr1 74812633 74812731 -122382701 + B1_Mm SINE Alu 40 137 -10 8 1155 261 0 0 0 chr1 74812731 74812760 -122382672 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1155 472 208 359 0 chr1 74813004 74813163 -122382269 - B3 SINE B2 0 216 1 8 1155 843 159 0 20 chr1 74813187 74813335 -122382097 - B1_Mur3 SINE Alu 0 149 5 8 1155 192 281 70 0 chr1 74813493 74813550 -122381882 + L2 LINE L2 3022 3082 -337 8 1155 1070 73 54 6 chr1 74813701 74813867 -122381565 + B2_Mm2 SINE B2 2 175 -20 8 1155 217 91 43 43 chr1 74814057 74814126 -122381306 + C-rich Low_complexity Low_complexity 2 70 0 8 1155 202 139 0 27 chr1 74814226 74814263 -122381169 + A-rich Low_complexity Low_complexity 6 41 0 8 1155 218 294 0 0 chr1 74814690 74814741 -122380691 + CT-rich Low_complexity Low_complexity 4 54 0 8 1155 504 0 0 0 chr1 74815031 74815087 -122380345 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1155 198 0 0 0 chr1 74815375 74815397 -122380035 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1155 220 413 0 0 chr1 74815561 74815740 -122379692 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1155 21 0 0 0 chr1 74818323 74818344 -122377088 + GC_rich Low_complexity Low_complexity 1 21 0 8 1155 184 154 39 0 chr1 74818408 74818460 -122376972 + C-rich Low_complexity Low_complexity 1 54 0 8 1155 21 0 0 0 chr1 74819455 74819476 -122375956 + AT_rich Low_complexity Low_complexity 1 21 0 8 1155 253 130 0 69 chr1 74821543 74821601 -122373831 - PB1D10 SINE Alu 0 117 64 8 1155 396 0 0 0 chr1 74823117 74823161 -122372271 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1155 207 173 38 19 chr1 74823426 74823479 -122371953 + C-rich Low_complexity Low_complexity 1 54 0 8 1155 275 250 0 0 chr1 74824424 74824480 -122370952 - ID4 SINE ID -13 70 15 8 1155 447 240 0 20 chr1 74824486 74824588 -122370844 - PB1D10 SINE Alu -8 109 10 8 1155 334 271 194 16 chr1 74824608 74824732 -122370700 - B1_Mur1 SINE Alu -3 146 1 8 1155 959 138 0 6 chr1 74826329 74826496 -122368936 + (GAA)n Simple_repeat Simple_repeat 1 166 0 8 1155 1265 83 0 6 chr1 74826509 74826690 -122368742 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1155 267 54 0 0 chr1 74827203 74827240 -122368192 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1155 189 0 0 0 chr1 74827260 74827281 -122368151 + (CAA)n Simple_repeat Simple_repeat 2 22 0 8 1155 213 231 77 0 chr1 74827334 74827399 -122368033 - L3b LINE CR1 -191 291 222 8 1155 198 167 0 0 chr1 74830573 74830609 -122364823 + CT-rich Low_complexity Low_complexity 3 38 0 8 1155 357 185 71 11 chr1 74831959 74832062 -122363370 + B4 SINE B4 125 238 -54 8 1155 515 78 13 0 chr1 74832161 74832238 -122363194 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 1155 318 26 0 0 chr1 74832409 74832448 -122362984 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1155 590 299 105 42 chr1 74832805 74833205 -122362227 - MLT1G LTR MaLR -105 450 1 8 1155 1140 213 24 0 chr1 74833680 74833891 -122361541 + B3 SINE B2 1 216 0 8 1155 221 180 20 0 chr1 74834425 74834475 -122360957 + C-rich Low_complexity Low_complexity 2 52 0 8 1155 676 184 72 0 chr1 74835008 74835133 -122360299 - B1_Mus2 SINE Alu -9 138 5 8 1155 189 0 0 0 chr1 74835954 74835975 -122359457 + (CTGGGG)n Simple_repeat Simple_repeat 2 22 0 8 1155 205 296 95 34 chr1 74837166 74837294 -122358138 - MIRm SINE MIR -125 151 6 8 1155 259 331 56 49 chr1 74837442 74837585 -122357847 + MIR SINE MIR 13 156 -112 8 1155 1056 65 0 0 chr1 74839287 74839441 -122355991 + (TG)n Simple_repeat Simple_repeat 2 155 0 8 1155 28 0 0 0 chr1 74842069 74842097 -122353335 + GC_rich Low_complexity Low_complexity 1 28 0 8 1156 306 0 0 0 chr1 74842450 74842484 -122352948 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1156 216 86 0 0 chr1 74842535 74842570 -122352862 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1156 610 116 16 0 chr1 74843805 74843934 -122351498 + (TC)n Simple_repeat Simple_repeat 1 131 0 8 1156 399 100 0 0 chr1 74844811 74844881 -122350551 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1156 631 306 35 55 chr1 74845346 74845602 -122349830 - MIR SINE MIR 0 262 12 8 1156 183 42 0 0 chr1 74845892 74845916 -122349516 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 8 1156 611 212 129 60 chr1 74846896 74847097 -122348335 - B3 SINE B2 -1 215 1 8 1156 245 27 54 0 chr1 74848039 74848076 -122347356 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 8 1156 1017 39 1 1 chr1 74848081 74848215 -122347217 - B1_Mus2 SINE Alu 0 147 16 8 1156 331 346 166 35 chr1 74850630 74851058 -122344374 - L2a LINE L2 -2 3424 2941 8 1156 516 235 43 0 chr1 74855602 74855717 -122339715 + B1_Mur1 SINE Alu 24 143 -6 8 1156 540 274 27 27 chr1 74855723 74855873 -122339559 - B3 SINE B2 -46 170 21 8 1156 542 214 291 62 chr1 74855990 74856169 -122339263 + ORR1C1 LTR MaLR 159 378 0 8 1156 274 203 141 0 chr1 74856441 74856505 -122338927 - ID4_ SINE ID -9 74 2 8 1156 629 302 123 28 chr1 74856574 74857003 -122338429 - L1MC4 LINE L1 -145 7897 7428 8 1156 378 300 168 61 chr1 74857006 74857286 -122338146 - L1MC4 LINE L1 -1032 7010 6701 8 1156 495 0 0 0 chr1 74857417 74857472 -122337960 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1156 1219 41 14 0 chr1 74857480 74857625 -122337807 - B1_Mus2 SINE Alu 0 147 1 8 1156 207 323 46 0 chr1 74857888 74857953 -122337479 + L2a LINE L2 2498 2565 -854 8 1156 251 352 11 0 chr1 74858103 74858117 -122337315 + L2a LINE L2 3284 3297 -78 8 1156 1199 118 0 53 chr1 74858117 74858323 -122337109 - B2_Mm2 SINE B2 0 195 1 8 1156 252 223 18 0 chr1 74858323 74858399 -122337033 + L2a LINE L2 3298 3426 0 8 1156 189 319 74 42 chr1 74858576 74858603 -122336829 + MIRm SINE MIR 179 276 0 8 1156 225 234 59 59 chr1 74858603 74858671 -122336761 + L2c LINE L2 3318 3385 -2 8 1156 669 290 32 6 chr1 74859091 74859247 -122336185 + ID_B1 SINE B4 2 161 -63 8 1156 289 333 62 0 chr1 74859173 74859269 -122336163 + PB1D7 SINE Alu 7 108 -12 8 1156 816 211 20 29 chr1 74859263 74859462 -122335970 - B3 SINE B2 0 195 2 8 1156 228 312 49 28 chr1 74859624 74859766 -122335666 - RLTR44D LTR ERVK -104 382 238 8 1156 215 0 0 159 chr1 74859878 74859985 -122335447 + (CACTG)n Simple_repeat Simple_repeat 2 91 0 8 1156 400 294 0 0 chr1 74860011 74860147 -122335285 + (CCCCAG)n Simple_repeat Simple_repeat 4 139 0 8 1156 634 56 34 0 chr1 74860743 74860832 -122334600 - B2_Mm2 SINE B2 -9 186 95 8 1156 315 49 0 0 chr1 74860862 74860903 -122334529 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1156 467 222 47 79 chr1 74860905 74861032 -122334400 - RSINE1 SINE B4 -41 124 2 8 1156 241 48 71 0 chr1 74861064 74861106 -122334326 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 8 1156 951 230 5 15 chr1 74861109 74861312 -122334120 - B3 SINE B2 -13 203 3 8 1156 368 315 28 0 chr1 74861333 74861441 -122333991 - PB1D10 SINE Alu -6 111 1 8 1156 351 278 192 19 chr1 74862149 74862362 -122333070 + L1ME3A LINE L1 5892 6141 -32 8 1156 210 322 53 11 chr1 74862657 74862751 -122332681 - MIR SINE MIR -85 177 80 8 1156 1351 68 34 0 chr1 74862765 74862942 -122332490 + B2_Mm2 SINE B2 7 189 -6 8 1156 629 28 0 0 chr1 74863320 74863391 -122332041 - tRNA-Gly-GGY tRNA tRNA -3 71 1 8 1156 291 308 41 41 chr1 74863788 74863910 -122331522 + Arthur1B DNA Tip100 37 158 -1067 8 1156 1492 178 158 14 chr1 74864377 74864737 -122330695 + MTD LTR MaLR 1 412 -7 8 1156 1873 153 128 114 chr1 74864884 74865156 -122330276 - RLTR24 LTR ERV1 -8 521 227 8 1156 1993 152 10 129 chr1 74865156 74865573 -122329859 + ORR1B2 LTR MaLR 1 367 0 8 1156 1873 153 128 114 chr1 74865573 74865705 -122329727 - RLTR24 LTR ERV1 -303 226 104 8 1156 1508 27 48 16 chr1 74865705 74865892 -122329540 - B2_Mm1a SINE B2 0 193 1 8 1156 1873 153 128 114 chr1 74865892 74865986 -122329446 - RLTR24 LTR ERV1 -426 103 17 8 1156 1542 236 122 76 chr1 74866004 74866425 -122329007 - Lx8 LINE L1 -225 7248 6815 8 1156 2294 145 111 3 chr1 74866425 74866805 -122328627 + MTC LTR MaLR 1 421 0 8 1156 1542 236 122 76 chr1 74866805 74867012 -122328420 - Lx8 LINE L1 -659 6814 6591 8 1156 827 141 96 0 chr1 74867037 74867172 -122328260 - B1_Mur3 SINE Alu -1 148 1 8 1156 568 171 191 0 chr1 74867291 74867396 -122328036 + ID_B1 SINE B4 80 204 -20 8 1156 249 108 0 0 chr1 74867404 74867441 -122327991 + (GGA)n Simple_repeat Simple_repeat 1 37 0 8 1156 650 296 106 56 chr1 74868184 74868524 -122326908 - ORR1E LTR MaLR 0 359 3 8 1156 582 268 26 19 chr1 74869147 74869303 -122326129 + Tigger7 DNA MER2_type 2335 2491 0 9 1156 287 252 27 36 chr1 74869304 74869415 -122326017 + Arthur1B DNA Tip100 843 952 -273 8 1156 599 236 0 16 chr1 74869416 74869541 -122325891 + B3A SINE B2 1 123 -75 9 1156 3397 126 168 24 chr1 74869545 74870170 -122325262 + RMER19A LTR ERVK 3 719 -18 9 1156 1098 90 14 0 chr1 74870170 74870315 -122325117 + B1_Mus2 SINE Alu 1 147 0 9 1156 261 0 0 0 chr1 74870321 74870350 -122325082 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1156 302 235 149 23 chr1 74870370 74870457 -122324975 + B3 SINE B2 119 216 0 9 1156 218 274 0 19 chr1 74870488 74870540 -122324892 + PB1 SINE Alu 1 51 -76 9 1156 307 113 0 19 chr1 74870715 74870769 -122324663 - B1_Mur3 SINE Alu -19 130 78 9 1156 300 111 0 0 chr1 74870777 74870822 -122324610 + (T)n Simple_repeat Simple_repeat 1 45 0 9 1156 1185 22 0 0 chr1 74870822 74870961 -122324471 - B1_Mm SINE Alu 0 147 9 9 1156 302 318 107 7 chr1 74871039 74871188 -122324244 - MIRc SINE MIR -75 193 30 9 1156 196 235 185 0 chr1 74871692 74871773 -122323659 + L2 LINE L2 2764 2859 -560 9 1156 258 160 0 0 chr1 74872081 74872131 -122323301 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 9 1156 261 0 0 0 chr1 74872207 74872236 -122323196 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 1156 375 192 183 0 chr1 74872236 74872340 -122323092 - RSINE1 SINE B4 -41 124 2 9 1156 682 165 120 0 chr1 74872361 74872494 -122322938 - B1_Mur3 SINE Alu 0 149 1 9 1156 203 0 37 0 chr1 74872495 74872522 -122322910 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1156 234 247 157 0 chr1 74872576 74872665 -122322767 - L1MB8 LINE L1 -5 6173 6071 9 1156 565 97 108 33 chr1 74872695 74872808 -122322624 - ORR1C1 LTR MaLR -10 368 250 9 1156 362 250 68 69 chr1 74872803 74872966 -122322466 + B3A SINE B2 17 191 -4 9 1156 186 43 0 0 chr1 74873262 74873285 -122322147 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1156 1315 199 60 15 chr1 74873293 74873559 -122321873 + MTD LTR MaLR 142 419 0 9 1156 886 95 0 31 chr1 74873734 74873864 -122321568 - B1_Mur2 SINE Alu -1 148 23 9 1156 364 222 56 119 chr1 74873744 74873887 -122321545 - B4A SINE B4 -72 220 87 9 1156 946 231 29 5 chr1 74874039 74874248 -122321184 + ID_B1 SINE B4 2 215 -9 9 1156 1266 54 0 0 chr1 74874250 74874398 -122321034 + B1_Mus1 SINE Alu 1 148 0 9 1156 1619 43 0 0 chr1 74874502 74874690 -122320742 + B2_Mm1t SINE B2 1 188 -5 9 1156 336 200 152 48 chr1 74874736 74874841 -122320591 - PB1D10 SINE Alu -1 116 1 9 1156 918 325 79 19 chr1 74874845 74875475 -122319957 - L1M5 LINE L1 -3195 2951 2284 9 1156 426 246 94 39 chr1 74875515 74875642 -122319790 - RSINE1 SINE B4 -31 134 1 9 1156 1530 218 91 11 chr1 74875668 74876030 -122319402 + Lx6 LINE L1 7024 7414 -46 9 1156 198 103 0 0 chr1 74876057 74876086 -122319346 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 1156 1071 244 89 32 chr1 74876108 74876421 -122319011 - MTE2b LTR MaLR 0 379 49 9 1156 266 280 133 5 chr1 74876877 74877085 -122318347 - MT2A LTR ERVL -6 527 293 9 1156 551 302 72 24 chr1 74877137 74877344 -122318088 - MTEa LTR MaLR -162 217 1 9 1156 22 56 0 0 chr1 74877692 74877728 -122317704 + AT_rich Low_complexity Low_complexity 1 36 0 9 1156 883 169 7 0 chr1 74877730 74877866 -122317566 + B1_Mur2 SINE Alu 2 138 -11 9 1156 378 0 0 0 chr1 74877866 74877908 -122317524 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1156 261 146 0 0 chr1 74877952 74878000 -122317432 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1156 527 299 140 0 chr1 74878030 74878187 -122317245 - B3A SINE B2 -18 180 2 9 1156 232 139 0 0 chr1 74878285 74878321 -122317111 + L1P5 LINE L1 5542 5577 -579 9 1156 335 335 109 11 chr1 74878338 74878522 -122316910 + L1MC LINE L1 5618 5819 -2063 9 1156 677 268 66 0 chr1 74878563 74878761 -122316671 + ID_B1 SINE B4 1 211 -13 9 1156 220 260 0 20 chr1 74878930 74878981 -122316451 + RSINE1 SINE B4 78 127 -38 9 1156 252 184 0 0 chr1 74879027 74879076 -122316356 + GA-rich Low_complexity Low_complexity 3 51 0 9 1156 1020 96 0 0 chr1 74879371 74879517 -122315915 + (TCC)n Simple_repeat Simple_repeat 3 148 0 9 1156 2183 162 45 0 chr1 74879727 74880085 -122315347 - ORR1D1 LTR MaLR 0 374 1 9 1156 232 324 104 64 chr1 74880167 74880320 -122315112 - L2b LINE L2 -1 3386 3231 9 1156 1251 242 94 9 chr1 74880320 74880662 -122314770 - ORR1D1 LTR MaLR -3 371 1 9 1156 249 312 93 51 chr1 74880662 74880768 -122314664 - L2b LINE L2 -157 3230 3112 9 1156 3438 23 10 2 chr1 74880768 74881161 -122314271 - MTA_Mm LTR MaLR 0 396 1 9 1156 249 295 78 32 chr1 74881161 74881270 -122314162 - L2b LINE L2 -264 3111 3000 9 1156 291 288 62 0 chr1 74881275 74881355 -122314077 + B3 SINE B2 131 215 -1 9 1156 640 317 47 81 chr1 74881435 74881881 -122313551 - L1M5 LINE L1 -419 5754 5324 9 1156 383 153 10 0 chr1 74881897 74881976 -122313456 - B1_Mur2 SINE Alu -2 145 64 9 1156 223 237 0 0 chr1 74881976 74882035 -122313397 - B1_Mur2 SINE Alu -27 122 64 9 1156 461 225 32 48 chr1 74882060 74882186 -122313246 - B1_Mur2 SINE Alu -24 125 2 9 1156 880 234 91 0 chr1 74882366 74882563 -122312869 - B3 SINE B2 0 216 2 9 1156 1003 237 51 4 chr1 74882563 74882783 -122312649 - B4A SINE B4 -61 231 1 9 1156 271 271 29 0 chr1 74882824 74882894 -122312538 - ID2 SINE ID -10 73 2 9 1156 254 211 35 0 chr1 74883044 74883101 -122312331 + tRNA-Ala-GCY_ tRNA tRNA 1 59 -16 9 1156 385 243 207 0 chr1 74883304 74883415 -122312017 - RSINE1 SINE B4 -29 136 3 9 1156 317 216 184 10 chr1 74883415 74883513 -122311919 - PB1D10 SINE Alu -1 116 2 9 1156 256 305 0 24 chr1 74883628 74883712 -122311720 + CT-rich Low_complexity Low_complexity 3 84 0 9 1156 228 230 302 9 chr1 74883776 74884008 -122311424 - L1M5 LINE L1 -1450 4696 4397 9 1156 527 95 0 10 chr1 74884029 74884125 -122311307 + L1_Mus3 LINE L1 6544 6638 0 9 1156 357 24 0 0 chr1 74884128 74884170 -122311262 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1156 1158 84 0 0 chr1 74884184 74884327 -122311105 + B1_Mus1 SINE Alu 1 143 -5 9 1156 302 0 26 0 chr1 74884331 74884369 -122311063 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1156 306 274 20 0 chr1 74884394 74884465 -122310967 - ID2 SINE ID -71 81 7 9 1156 405 0 0 0 chr1 74884484 74884529 -122310903 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1156 298 348 8 51 chr1 74884531 74884649 -122310783 - PB1D9 SINE Alu -7 113 1 9 1156 234 294 146 36 chr1 74884650 74884927 -122310505 - L1M5 LINE L1 -1733 4413 4094 9 1156 198 0 0 0 chr1 74884927 74884949 -122310483 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 9 1156 1581 28 6 0 chr1 74884949 74885128 -122310304 - B2_Mm1t SINE B2 -12 181 2 9 1156 234 294 146 36 chr1 74885128 74885206 -122310226 - L1M5 LINE L1 -2053 4093 4019 9 1156 328 336 76 8 chr1 74886027 74886159 -122309273 + L1MC4 LINE L1 6444 6584 -1411 9 1156 894 133 0 0 chr1 74886160 74886288 -122309144 + B1_Mur3 SINE Alu 9 136 -13 9 1156 437 91 45 15 chr1 74886343 74886410 -122309022 + HAL1-3A_ME LINE L1 1966 2034 -824 9 1156 490 61 37 0 chr1 74886410 74886492 -122308940 + (CAGA)n Simple_repeat Simple_repeat 4 88 0 9 1156 1175 261 68 22 chr1 74886507 74886875 -122308557 + L1MC4 LINE L1 6701 7085 -957 9 1156 315 224 21 96 chr1 74886901 74886995 -122308437 + L1MC4 LINE L1 7302 7388 -654 9 1156 302 326 51 58 chr1 74886999 74887155 -122308277 + L1MC4 LINE L1 7608 7762 -120 9 1156 604 344 23 23 chr1 74887158 74887375 -122308057 + MLT1A0 LTR MaLR 15 231 -134 9 1156 576 261 92 18 chr1 74887546 74887812 -122307620 + Lx8 LINE L1 5574 5922 -378 9 1156 216 111 0 0 chr1 74887843 74887879 -122307553 + (TATG)n Simple_repeat Simple_repeat 4 39 0 9 1156 220 159 0 87 chr1 74888048 74888117 -122307315 + A-rich Low_complexity Low_complexity 3 65 0 9 1156 1152 291 42 42 chr1 74888428 74888877 -122306555 - Lx8 LINE L1 -183 7290 6842 9 1156 2274 255 92 8 chr1 74889016 74889632 -122305800 + Lx8 LINE L1 6114 6781 -692 9 1156 1229 251 146 8 chr1 74889631 74890016 -122305416 + Lx8 LINE L1 7029 7466 -7 9 1156 218 229 0 20 chr1 74890109 74890158 -122305274 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 9 1156 454 278 38 0 chr1 74890307 74890440 -122304992 - Lx8 LINE L1 -180 7293 7156 9 1156 225 146 0 47 chr1 74890510 74890553 -122304879 + MamGypLTR1a LTR Gypsy 155 195 -589 9 1156 723 252 86 36 chr1 74890974 74891196 -122304236 - MLT1A0 LTR MaLR -127 238 6 9 1156 276 231 102 71 chr1 74891214 74891296 -122304136 + B3A SINE B2 97 181 -17 9 1156 348 24 0 0 chr1 74891296 74891337 -122304095 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1156 276 231 102 71 chr1 74891337 74891352 -122304080 + B3A SINE B2 182 196 -2 9 1156 835 242 116 8 chr1 74891374 74891616 -122303816 + B4 SINE B4 2 269 -23 9 1156 306 0 0 0 chr1 74891635 74891669 -122303763 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1156 242 182 0 15 chr1 74891683 74891750 -122303682 + GA-rich Low_complexity Low_complexity 2 67 0 9 1156 210 37 0 0 chr1 74891795 74891822 -122303610 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 1156 1213 82 41 0 chr1 74891822 74891993 -122303439 - B2_Mm2 SINE B2 -15 180 3 9 1156 1113 97 62 6 chr1 74892001 74892177 -122303255 - B2_Mm2 SINE B2 -9 186 1 9 1156 297 0 0 0 chr1 74892372 74892405 -122303027 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1156 588 65 0 0 chr1 74892466 74892543 -122302889 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 9 1156 250 405 32 16 chr1 74892549 74892737 -122302695 - ORR1E LTR MaLR -168 191 1 9 1156 1521 42 5 0 chr1 74893583 74893774 -122301658 - B2_Mm1a SINE B2 -1 192 1 9 1156 846 151 170 16 chr1 74893922 74894110 -122301322 + URR1B DNA MER1_type 5 221 -4 9 1156 2364 162 0 72 chr1 74894236 74894681 -122300751 + MTC LTR MaLR 1 413 -8 9 1156 1102 62 7 0 chr1 74894852 74894998 -122300434 + B1_Mus1 SINE Alu 2 148 0 9 1156 645 221 64 0 chr1 74896172 74896312 -122299120 + B1_Mur1 SINE Alu 1 149 0 9 1156 191 333 46 0 chr1 74896360 74896447 -122298985 - MIRb SINE MIR -144 124 34 9 1156 343 222 43 22 chr1 74898339 74898431 -122297001 - MIRc SINE MIR -98 170 77 1 1156 417 265 19 10 chr1 74899592 74899695 -122295737 + RSINE1 SINE B4 2 105 -60 1 1156 212 211 77 0 chr1 74900017 74900069 -122295363 + B1F SINE Alu 1 56 -93 1 1156 360 0 0 0 chr1 74900093 74900133 -122295299 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1156 405 0 0 0 chr1 74900133 74900177 -122295255 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1156 234 136 0 0 chr1 74900177 74900221 -122295211 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 1 1156 33 103 0 0 chr1 74901546 74901663 -122293769 + GC_rich Low_complexity Low_complexity 1 117 0 1 1156 215 208 0 0 chr1 74902132 74902180 -122293252 + (CCG)n Simple_repeat Simple_repeat 2 49 0 1 1156 24 0 0 0 chr1 74902790 74902814 -122292618 + GC_rich Low_complexity Low_complexity 1 24 0 1 1156 189 0 0 0 chr1 74903166 74903187 -122292245 + (CCCCCG)n Simple_repeat Simple_repeat 5 25 0 1 1156 473 204 26 69 chr1 74906609 74906725 -122288707 - B1F SINE Alu -16 133 23 1 1156 790 104 181 0 chr1 74907136 74907280 -122288152 - URR1A DNA MER1_type -56 170 1 1 1156 401 234 15 1 chr1 74907417 74907513 -122287919 + PB1D10 SINE Alu 17 115 -34 1 1156 216 0 0 0 chr1 74907737 74907761 -122287671 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1156 771 127 24 0 chr1 74907762 74907888 -122287544 - B1_Mus2 SINE Alu -9 138 10 1 1156 350 359 0 0 chr1 74908228 74908334 -122287098 + PB1D10 SINE Alu 1 106 -11 1 1156 879 85 0 0 chr1 74908336 74908466 -122286966 + (TAGA)n Simple_repeat Simple_repeat 1 130 0 1 1156 811 228 11 22 chr1 74908466 74908650 -122286782 + B3 SINE B2 35 216 0 1 1156 504 208 76 46 chr1 74908744 74908875 -122286557 + B1_Mur3 SINE Alu 2 136 -13 1 1156 803 192 14 0 chr1 74909181 74909327 -122286105 - B1_Mus1 SINE Alu 0 148 1 1 1156 862 211 111 0 chr1 74909428 74909618 -122285814 - B3 SINE B2 -5 211 1 1 1156 2995 20 0 0 chr1 74909756 74910102 -122285330 - ORR1A0 LTR MaLR 0 346 1 1 1156 13771 47 10 0 chr1 74910102 74911876 -122283556 - ORR1A0-int LTR MaLR 0 1792 1 1 1156 1230 50 0 0 chr1 74911880 74912040 -122283392 - MT2_Mm LTR ERVL -333 160 1 1 1156 234 0 0 0 chr1 74912041 74912067 -122283365 + (TCC)n Simple_repeat Simple_repeat 2 27 0 1 1156 207 0 0 0 chr1 74912081 74912104 -122283328 + (CAG)n Simple_repeat Simple_repeat 1 23 0 1 1156 440 231 27 42 chr1 74912104 74912234 -122283198 - PB1 SINE Alu -23 126 1 1 1156 312 282 13 0 chr1 74912361 74912439 -122282993 + ID4 SINE ID 5 83 0 1 1156 409 290 9 0 chr1 74912495 74912602 -122282830 - RSINE1 SINE B4 -12 153 46 1 1156 1247 62 62 0 chr1 74913000 74913176 -122282256 - B2_Mm2 SINE B2 0 195 9 1 1156 738 104 9 9 chr1 74913299 74913415 -122282017 - B1_Mur4 SINE Alu -30 120 5 1 1156 1030 76 7 0 chr1 74913493 74913638 -122281794 - B1_Mm SINE Alu 0 147 2 1 1156 477 50 0 0 chr1 74913671 74913731 -122281701 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1156 465 311 40 40 chr1 74913867 74914068 -122281364 + Lx8 LINE L1 7155 7355 -118 1 1156 376 111 14 14 chr1 74914150 74914223 -122281209 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1156 22 0 0 0 chr1 74914429 74914451 -122280981 + AT_rich Low_complexity Low_complexity 1 22 0 1 1156 770 145 69 0 chr1 74914498 74914629 -122280803 + B1_Mus2 SINE Alu 8 147 0 1 1156 614 273 24 14 chr1 74914651 74914859 -122280573 - B3 SINE B2 -6 210 1 1 1156 222 37 0 0 chr1 74914860 74914887 -122280545 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1156 374 305 54 8 chr1 74914888 74915017 -122280415 - B1F2 SINE Alu -13 136 2 1 1156 621 242 15 0 chr1 74915938 74916070 -122279362 - B1_Mur1 SINE Alu -3 146 13 1 1156 181 256 0 0 chr1 74916201 74916240 -122279192 + MIRb SINE MIR 64 102 -166 1 1156 696 215 37 0 chr1 74916328 74916463 -122278969 - MER2 DNA MER2_type -61 284 145 1 1156 1121 68 0 0 chr1 74916484 74916632 -122278800 + B1_Mus1 SINE Alu 1 148 0 1 1156 309 224 106 0 chr1 74916850 74916935 -122278497 - L1MD LINE L1 -2947 3199 3106 1 1156 461 209 25 50 chr1 74917012 74917133 -122278299 - B4A SINE B4 -173 119 2 1 1156 341 337 21 112 chr1 74917153 74917340 -122278092 + B4 SINE B4 1 170 -122 1 1156 934 273 0 0 chr1 74917371 74917580 -122277852 + B3 SINE B2 1 209 -7 1 1156 315 0 0 0 chr1 74917635 74917670 -122277762 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1156 923 34 0 0 chr1 74917670 74917787 -122277645 - B1_Mm SINE Alu -10 137 21 1 1156 1423 269 71 76 chr1 74917793 74918373 -122277059 - RMER19C LTR ERVK -34 577 1 1 1156 217 261 9 171 chr1 74918377 74918488 -122276944 + RSINE1 SINE B4 73 165 0 1 1156 447 196 390 7 chr1 74919039 74919193 -122276239 + B3 SINE B2 4 216 0 1 1156 278 50 25 0 chr1 74919243 74919283 -122276149 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 1 1156 204 360 17 35 chr1 74919862 74919977 -122275455 + MIR SINE MIR 112 224 -38 1 1156 279 0 0 0 chr1 74920010 74920041 -122275391 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1156 1458 45 0 0 chr1 74920042 74920219 -122275213 - B2_Mm1a SINE B2 -15 178 2 1 1156 183 362 0 0 chr1 74920318 74920376 -122275056 + MIR SINE MIR 94 151 -111 1 1156 3191 87 6 41 chr1 74920483 74920975 -122274457 + MT2C_Mm LTR ERVL 1 475 0 1 1156 584 246 49 0 chr1 74921346 74921488 -122273944 - RSINE1 SINE B4 -13 152 4 1 1156 428 294 104 17 chr1 74921558 74921731 -122273701 - MIR SINE MIR -71 191 4 1 1156 2712 137 26 53 chr1 74922209 74922751 -122272681 + RLTR11A2 LTR ERVK 1 527 0 1 1156 231 296 0 52 chr1 74923028 74923124 -122272308 + MIR3 SINE MIR 74 161 -47 1 1156 241 194 161 0 chr1 74923981 74924043 -122271389 + ID4_ SINE ID 1 72 -11 1 1156 481 170 0 87 chr1 74924083 74924186 -122271246 + MT2B LTR ERVL 164 257 -344 1 1156 971 102 0 0 chr1 74924094 74924231 -122271201 + B1_Mus1 SINE Alu 12 148 0 1 1156 1046 88 0 7 chr1 74924275 74924414 -122271018 + B1_Mus2 SINE Alu 1 139 -8 1 1156 357 24 0 0 chr1 74924414 74924456 -122270976 + (CAGAA)n Simple_repeat Simple_repeat 4 45 0 1 1156 207 0 0 0 chr1 74924470 74924493 -122270939 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1156 360 0 0 0 chr1 74924620 74924660 -122270772 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1156 591 238 107 20 chr1 74925508 74925705 -122269727 + B3 SINE B2 1 214 -2 1 1156 262 287 123 84 chr1 74925955 74925995 -122269437 + MT2B LTR ERVL 93 133 -468 1 1156 980 236 0 18 chr1 74925995 74926215 -122269217 + B3 SINE B2 1 216 0 1 1156 262 287 123 84 chr1 74926215 74926353 -122269079 + MT2B LTR ERVL 134 278 -323 1 1156 638 186 93 0 chr1 74926250 74926379 -122269053 + B1_Mur3 SINE Alu 9 149 0 1 1156 410 212 61 17 chr1 74926537 74926652 -122268780 - PB1D7 SINE Alu 0 120 1 1 1156 533 138 11 0 chr1 74926684 74926778 -122268654 + (GGA)n Simple_repeat Simple_repeat 3 97 0 1 1156 1609 11 21 0 chr1 74927015 74927204 -122268228 - B2_Mm1a SINE B2 0 193 1 1 1156 207 100 0 0 chr1 74928737 74928767 -122266665 + (CGG)n Simple_repeat Simple_repeat 3 32 0 1 1156 225 108 0 0 chr1 74928898 74928935 -122266497 + (CGG)n Simple_repeat Simple_repeat 2 38 0 1 1156 216 0 0 0 chr1 74930683 74930707 -122264725 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1156 202 281 19 46 chr1 74932689 74932797 -122262635 + CT-rich Low_complexity Low_complexity 3 107 0 1 1156 486 0 0 0 chr1 74933814 74933868 -122261564 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1156 531 0 0 0 chr1 74933990 74934049 -122261383 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1156 284 209 0 11 chr1 74934050 74934142 -122261290 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1156 822 113 14 7 chr1 74934495 74934638 -122260794 + (TTC)n Simple_repeat Simple_repeat 1 144 0 1 1156 662 126 27 0 chr1 74934648 74934759 -122260673 - B1_Mur4 SINE Alu -2 148 35 1 1156 188 267 125 29 chr1 74934891 74934995 -122260437 + MIR SINE MIR 28 141 -121 1 1156 1338 73 0 0 chr1 74935461 74935789 -122259643 + (CA)n Simple_repeat Simple_repeat 1 328 0 1 1156 315 0 0 0 chr1 74935789 74935823 -122259609 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1156 210 143 0 0 chr1 74936439 74936474 -122258958 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1156 233 226 0 36 chr1 74937551 74937606 -122257826 - ID SINE ID -136 88 36 1 1156 265 289 0 12 chr1 74937557 74937641 -122257791 - ID4 SINE ID 0 83 1 1 1156 232 273 64 13 chr1 74937641 74937673 -122257759 - PB1D7 SINE Alu -76 44 9 1 1156 597 49 0 0 chr1 74938053 74938134 -122257298 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1156 225 154 0 0 chr1 74938445 74938484 -122256948 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1156 207 0 0 0 chr1 74940286 74940309 -122255123 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1156 198 0 0 0 chr1 74940315 74940337 -122255095 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1156 371 278 80 40 chr1 74940983 74941159 -122254273 + L2a LINE L2 3224 3406 -20 1 1156 180 0 0 0 chr1 74941645 74941665 -122253767 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1156 207 0 0 0 chr1 74941771 74941794 -122253638 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1156 189 0 0 0 chr1 74941794 74941814 -122253618 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1156 300 250 15 15 chr1 74944323 74944388 -122251044 - L1MEg LINE L1 -4137 1947 1883 1 1156 315 0 0 0 chr1 74945024 74945059 -122250373 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1156 23 0 0 0 chr1 74945487 74945510 -122249922 + GC_rich Low_complexity Low_complexity 1 23 0 1 1156 189 375 73 0 chr1 74946869 74946965 -122248467 - MIR SINE MIR -63 145 43 1 1156 423 0 0 0 chr1 74947607 74947654 -122247778 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1156 769 141 46 60 chr1 74948071 74948222 -122247210 - B1_Mur4 SINE Alu -1 149 1 1 1156 278 62 45 30 chr1 74948344 74948411 -122247021 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 1 1156 271 186 0 34 chr1 74949814 74949903 -122245529 + CT-rich Low_complexity Low_complexity 2 87 0 1 1156 609 14 0 0 chr1 74951091 74951161 -122244271 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1156 180 0 0 0 chr1 74951997 74952017 -122243415 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1156 539 229 6 0 chr1 74952647 74952817 -122242615 + (GGATG)n Simple_repeat Simple_repeat 4 174 0 1 1156 207 362 9 0 chr1 74953348 74953464 -122241968 + (TGGA)n Simple_repeat Simple_repeat 4 120 0 1 1156 1607 302 41 4 chr1 74955011 74955500 -122239932 + Lx8 LINE L1 6435 6941 -532 1 1156 763 192 12 73 chr1 74955509 74955742 -122239690 + RLTR11B LTR ERVK 53 262 -191 1 1156 209 180 20 0 chr1 74955742 74955792 -122239640 + GA-rich Low_complexity Low_complexity 1 51 0 1 1156 690 144 72 33 chr1 74955795 74955975 -122239457 + RLTR11B LTR ERVK 200 386 -67 1 1156 446 305 12 74 chr1 74955969 74956132 -122239300 + MLT1A0 LTR MaLR 142 294 -71 1 1156 336 299 0 0 chr1 74956338 74956515 -122238917 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1156 638 219 16 0 chr1 74957933 74958061 -122237371 + B1F SINE Alu 4 133 -16 1 1156 1121 60 0 0 chr1 74958128 74958261 -122237171 - B1_Mus2 SINE Alu -13 134 2 1 1156 1449 94 16 0 chr1 74958272 74958464 -122236968 - B2_Mm2 SINE B2 0 195 1 1 1156 1536 199 37 43 chr1 74958467 74958819 -122236613 + ORR1C2 LTR MaLR 35 384 0 1 1156 324 329 12 0 chr1 74959486 74959571 -122235861 + L1MC LINE L1 5562 5647 -2235 1 1156 261 0 0 0 chr1 74959622 74959651 -122235781 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1156 509 304 65 92 chr1 74959680 74959975 -122235457 - B4A SINE B4 -24 268 18 1 1156 1246 176 175 25 chr1 74959976 74960291 -122235141 - ORR1B2 LTR MaLR -5 362 1 1 1156 300 88 77 26 chr1 74960343 74960460 -122234972 + (CTATA)n Simple_repeat Simple_repeat 2 124 0 1 1156 288 130 0 0 chr1 74961277 74961323 -122234109 + (TCC)n Simple_repeat Simple_repeat 3 48 0 1 1156 360 225 0 40 chr1 74961328 74961402 -122234030 - ID4_ SINE ID -11 72 2 1 1156 705 90 45 0 chr1 74962057 74962190 -122233242 + (TC)n Simple_repeat Simple_repeat 1 139 0 1 1156 242 238 16 16 chr1 74962929 74962993 -122232439 + CT-rich Low_complexity Low_complexity 1 64 0 1 1156 507 333 81 19 chr1 74964148 74964469 -122230963 - L1MB8 LINE L1 -17 6161 5821 1 1156 414 0 0 0 chr1 74964469 74964515 -122230917 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1156 250 343 19 19 chr1 74964524 74964631 -122230801 - MIR SINE MIR -107 155 49 1 1156 423 0 0 0 chr1 74965312 74965359 -122230073 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1156 225 274 26 116 chr1 74966039 74966219 -122229213 - MIRc SINE MIR -54 214 47 1 1156 1565 32 0 31 chr1 74966277 74966469 -122228963 + B2_Mm1t SINE B2 1 186 -7 1 1156 261 0 0 0 chr1 74967236 74967265 -122228167 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1156 285 193 0 0 chr1 74967392 74967453 -122227979 + B1F SINE Alu 47 107 -13 1 1156 702 163 138 8 chr1 74967468 74967598 -122227834 - B1_Mur4 SINE Alu -1 149 3 1 1156 1011 241 63 85 chr1 74969879 74970210 -122225222 - MER33 DNA MER1_type 0 324 1 1 1156 284 115 192 0 chr1 74970370 74970422 -122225010 + B1_Mur2 SINE Alu 83 144 -5 1 1156 711 140 0 20 chr1 74970424 74970570 -122224862 + GA-rich Low_complexity Low_complexity 1 143 0 1 1156 761 340 5 0 chr1 74970576 74970791 -122224641 + ID_B1 SINE B4 9 224 0 1 1156 370 246 17 76 chr1 74970823 74970942 -122224490 + PB1D7 SINE Alu 9 120 0 1 1156 287 25 0 24 chr1 74970943 74970984 -122224448 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1156 242 349 80 13 chr1 74972505 74972656 -122222776 - MER91A DNA Tip100 0 196 36 1 1157 405 317 25 8 chr1 74975269 74975390 -122220042 + PB1 SINE Alu 1 123 -4 1 1157 23 0 0 0 chr1 74975563 74975586 -122219846 + AT_rich Low_complexity Low_complexity 1 23 0 1 1157 548 273 0 22 chr1 74975600 74975735 -122219697 - B1_Mur1 SINE Alu -2 147 16 1 1157 919 228 63 0 chr1 74976060 74976266 -122219166 - ID_B1 SINE B4 -1 223 5 1 1157 227 182 0 43 chr1 74976278 74976324 -122219108 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 1 1157 380 200 296 0 chr1 74976329 74976444 -122218988 - ID_B1 SINE B4 0 224 76 1 1157 456 332 81 79 chr1 74976572 74977094 -122218338 + L1M5 LINE L1 3398 3925 -2221 1 1157 784 246 16 72 chr1 74977094 74977287 -122218145 + B3A SINE B2 1 182 -16 1 1157 317 291 107 87 chr1 74977287 74977359 -122218073 + L1M5 LINE L1 3926 3985 -2161 1 1157 472 300 0 8 chr1 74977359 74977480 -122217952 + PB1D7 SINE Alu 1 120 0 1 1157 317 291 107 87 chr1 74977480 74977523 -122217909 + L1M5 LINE L1 3986 4029 -2117 1 1157 221 359 0 0 chr1 74977547 74977559 -122217873 + ID SINE ID 72 83 -141 1 1157 224 318 16 0 chr1 74977559 74977622 -122217810 + B1F2 SINE Alu 3 66 -83 1 1157 366 331 63 21 chr1 74978066 74978257 -122217175 + L1ME3B LINE L1 5859 6057 -183 1 1157 4766 126 28 9 chr1 74978723 74979463 -122215969 + RMER6A LTR ERVK 3 756 0 1 1157 786 209 167 5 chr1 74980063 74980255 -122215177 - MTD LTR MaLR 0 419 197 1 1157 718 169 0 8 chr1 74980271 74980390 -122215042 - PB1D9 SINE Alu -1 119 2 1 1157 21 0 0 0 chr1 74980404 74980425 -122215007 + AT_rich Low_complexity Low_complexity 1 21 0 1 1157 735 44 0 0 chr1 74980425 74980516 -122214916 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1157 435 264 5 44 chr1 74980634 74980770 -122214662 - MER33 DNA MER1_type -82 127 1 1 1157 859 194 14 0 chr1 74980951 74981095 -122214337 - B1_Mur3 SINE Alu -2 147 2 1 1157 531 0 0 0 chr1 74981724 74981783 -122213649 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1157 372 234 76 55 chr1 74982260 74982405 -122213027 - L1MC LINE L1 -2946 3200 3053 1 1157 249 179 36 60 chr1 74983453 74983536 -122211896 + (TGAA)n Simple_repeat Simple_repeat 4 84 0 1 1157 327 328 76 8 chr1 74984254 74984386 -122211046 + MIRb SINE MIR 17 157 -111 1 1157 308 223 46 33 chr1 74984394 74984497 -122210935 - PB1D7 SINE Alu 0 120 17 1 1157 954 278 115 29 chr1 74984833 74985181 -122210251 - MTEa LTR MaLR -1 378 1 1 1157 249 155 0 0 chr1 74985428 74985486 -122209946 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 1 1157 745 138 14 42 chr1 74985487 74985631 -122209801 - B1_Mur3 SINE Alu 0 149 10 1 1157 556 84 2 13 chr1 74985673 74985773 -122209659 - L1_Mus2 LINE L1 0 6584 6489 1 1157 2471 37 3 13 chr1 74985775 74986077 -122209355 - L1_Mus1 LINE L1 0 6567 6269 1 1157 189 0 0 0 chr1 74986114 74986135 -122209297 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1157 496 241 85 57 chr1 74986774 74986915 -122208517 + MTE2b LTR MaLR 235 379 0 1 1157 757 251 43 38 chr1 74986989 74987200 -122208232 + B3 SINE B2 5 216 0 1 1157 330 249 38 0 chr1 74987368 74987480 -122207952 - L1MC4 LINE L1 -508 7487 7316 1 1157 264 315 0 0 chr1 74987536 74987609 -122207823 + B4 SINE B4 12 84 -208 1 1157 235 359 70 8 chr1 74987975 74988104 -122207328 + MIRb SINE MIR 104 240 -28 1 1157 226 227 130 26 chr1 74989522 74989599 -122205833 + MLT1A1 LTR MaLR 259 343 -65 1 1157 292 244 85 16 chr1 74989953 74990082 -122205350 + L2 LINE L2 2733 2870 -549 1 1157 212 226 32 16 chr1 74990176 74990239 -122205193 + CT-rich Low_complexity Low_complexity 4 67 0 1 1157 503 274 0 8 chr1 74990632 74990750 -122204682 - PB1D7 SINE Alu -2 118 2 1 1157 437 279 53 18 chr1 74990759 74990872 -122204560 - PB1D10 SINE Alu 0 117 1 1 1157 348 311 85 75 chr1 74991039 74991251 -122204181 + ORR1E LTR MaLR 1 214 -145 1 1157 236 30 30 0 chr1 74991325 74991358 -122204074 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1157 26 0 0 0 chr1 74993859 74993885 -122201547 + GC_rich Low_complexity Low_complexity 1 26 0 1 1157 231 36 0 0 chr1 74994711 74994739 -122200693 + (CCG)n Simple_repeat Simple_repeat 2 29 0 1 1157 24 32 0 0 chr1 74994833 74994864 -122200568 + GC_rich Low_complexity Low_complexity 1 31 0 1 1157 21 0 0 0 chr1 74996500 74996521 -122198911 + GC_rich Low_complexity Low_complexity 1 21 0 1 1157 25 31 0 0 chr1 74997691 74997723 -122197709 + GC_rich Low_complexity Low_complexity 1 32 0 1 1157 22 0 0 0 chr1 74997954 74997976 -122197456 + GC_rich Low_complexity Low_complexity 1 22 0 1 1157 32 81 0 0 chr1 74998073 74998147 -122197285 + GC_rich Low_complexity Low_complexity 1 74 0 1 1157 258 32 0 0 chr1 74998949 74998980 -122196452 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 1 1157 231 298 155 78 chr1 74999267 74999297 -122196135 - B4A SINE B4 -46 246 94 1 1157 366 296 0 36 chr1 74999297 74999409 -122196023 - PB1D10 SINE Alu -1 116 9 1 1157 270 0 0 0 chr1 74999441 74999471 -122195961 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1157 261 285 71 110 chr1 74999533 74999550 -122195882 - B1F SINE Alu -1 148 101 1 1157 385 286 48 0 chr1 74999550 74999655 -122195777 - ID_B1 SINE B4 -9 215 106 1 1157 261 285 71 110 chr1 74999655 74999687 -122195745 - B1F SINE Alu -1 100 1 1 1157 281 119 0 0 chr1 74999772 74999814 -122195618 - B1_Mur1 SINE Alu -9 140 99 1 1157 256 139 0 0 chr1 75000013 75000049 -122195383 + ID4_ SINE ID 34 69 -14 1 1157 201 121 0 0 chr1 75000049 75000082 -122195350 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1157 217 300 232 53 chr1 75000686 75000781 -122194651 - PB1D10 SINE Alu -1 116 5 3 1157 891 208 64 10 chr1 75000828 75001012 -122194420 + B3 SINE B2 1 197 -19 4 1157 423 0 0 0 chr1 75001012 75001059 -122194373 + (CTA)n Simple_repeat Simple_repeat 1 47 0 5 1157 891 208 64 10 chr1 75001059 75001078 -122194354 + B3 SINE B2 198 214 -2 4 1157 24 0 0 0 chr1 75001078 75001102 -122194330 + AT_rich Low_complexity Low_complexity 1 24 0 6 1157 670 241 15 0 chr1 75001430 75001563 -122193869 + RSINE1 SINE B4 3 137 -28 7 1157 299 132 15 0 chr1 75001586 75001654 -122193778 + (TC)n Simple_repeat Simple_repeat 2 70 0 8 1157 814 190 7 26 chr1 75001678 75001829 -122193603 + B1_Mur1 SINE Alu 2 149 0 9 1157 329 244 0 148 chr1 75002261 75002312 -122193120 + MIRb SINE MIR 107 157 -111 1 1157 324 266 64 0 chr1 75002312 75002421 -122193011 + PB1D10 SINE Alu 2 117 0 1 1157 329 244 0 148 chr1 75002421 75002470 -122192962 + MIRb SINE MIR 158 192 -76 1 1157 1083 107 11 6 chr1 75002597 75002776 -122192656 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1157 509 218 8 0 chr1 75002776 75002900 -122192532 + CT-rich Low_complexity Low_complexity 1 125 0 1 1157 969 138 14 0 chr1 75002912 75003057 -122192375 + B1_Mur4 SINE Alu 1 147 -3 1 1157 431 314 69 97 chr1 75003144 75003391 -122192041 - B4 SINE B4 -17 275 36 1 1157 1412 93 5 15 chr1 75004622 75004819 -122190613 + B2_Mm2 SINE B2 1 195 0 1 1157 290 267 53 0 chr1 75004831 75004906 -122190526 + ID4_ SINE ID 1 79 -4 1 1157 860 219 6 6 chr1 75005153 75005314 -122190118 - B3A SINE B2 -36 162 2 1 1157 1095 187 76 9 chr1 75005592 75005803 -122189629 - URR1B DNA MER1_type 0 225 1 1 1157 279 284 0 0 chr1 75006125 75006199 -122189233 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1157 304 279 64 149 chr1 75006265 75006594 -122188838 - L2a LINE L2 -92 3334 3034 2 1157 907 223 9 59 chr1 75006756 75006975 -122188457 - B3 SINE B2 -8 208 1 2 1157 1003 101 0 0 chr1 75007013 75007151 -122188281 - B1_Mus2 SINE Alu 0 147 10 2 1157 445 168 33 108 chr1 75007048 75007168 -122188264 - MT2B LTR ERVL -337 264 154 2 1157 243 259 36 22 chr1 75007053 75007191 -122188241 - ORR1B1-int LTR MaLR -755 754 615 2 1157 321 194 35 12 chr1 75007232 75007317 -122188115 - ID4 SINE ID -60 92 2 2 1157 1150 38 0 0 chr1 75007357 75007490 -122187942 + B1_Mus2 SINE Alu 2 134 -13 2 1157 200 288 102 12 chr1 75012243 75012390 -122183042 + MIRc SINE MIR 59 222 -46 2 1157 772 114 136 0 chr1 75012452 75012584 -122182848 - B1_Mur4 SINE Alu 0 150 1 2 1157 359 219 0 0 chr1 75012927 75012991 -122182441 - PB1D7 SINE Alu -5 115 52 3 1157 740 206 57 13 chr1 75013139 75013296 -122182136 + ID_B1 SINE B4 9 172 -52 3 1157 546 158 100 20 chr1 75013305 75013426 -122182006 + B1_Mus1 SINE Alu 15 139 -10 3 1157 351 89 0 0 chr1 75013508 75013564 -122181868 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1157 512 233 158 22 chr1 75015141 75015325 -122180107 + MER3 DNA MER1_type 1 209 0 3 1157 186 43 0 0 chr1 75016200 75016223 -122179209 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 3 1157 486 200 12 0 chr1 75016274 75016359 -122179073 - RSINE1 SINE B4 -67 98 13 3 1157 328 228 86 11 chr1 75016385 75016478 -122178954 + MER106B DNA MER1_type 956 1055 -4 3 1157 467 235 0 0 chr1 75016823 75016904 -122178528 - ID4 SINE ID 0 83 3 3 1157 266 217 99 28 chr1 75017785 75017856 -122177576 - MIR SINE MIR 0 262 187 3 1157 189 320 77 0 chr1 75017862 75017940 -122177492 + L2a LINE L2 3342 3425 -1 4 1157 683 232 41 21 chr1 75020405 75020550 -122174882 + RSINE1 SINE B4 2 149 -16 4 1157 315 0 0 0 chr1 75020564 75020599 -122174833 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1157 252 0 0 0 chr1 75020599 75020626 -122174806 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1157 630 53 32 0 chr1 75020720 75020815 -122174617 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 4 1157 342 208 255 10 chr1 75020823 75020925 -122174507 - B3 SINE B2 -88 128 2 4 1157 2146 161 90 5 chr1 75021304 75021692 -122173740 - MTC LTR MaLR 0 421 1 4 1157 327 243 29 0 chr1 75021816 75021886 -122173546 + ID4 SINE ID 1 72 -11 4 1157 213 121 0 0 chr1 75021912 75021945 -122173487 + (GAA)n Simple_repeat Simple_repeat 1 33 0 4 1157 236 309 110 30 chr1 75022122 75022222 -122173210 - ID_B1 SINE B4 -26 198 91 4 1157 297 0 0 0 chr1 75022962 75022995 -122172437 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1157 315 0 0 0 chr1 75023045 75023080 -122172352 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1157 1138 72 0 0 chr1 75024405 75024543 -122170889 + B1_Mus1 SINE Alu 2 139 -9 5 1157 182 303 32 114 chr1 75024775 75024898 -122170534 - MIRm SINE MIR -122 154 42 5 1157 189 107 0 0 chr1 75025229 75025257 -122170175 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 5 1157 435 119 0 0 chr1 75026067 75026134 -122169298 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1157 571 255 39 13 chr1 75026185 75026340 -122169092 + RSINE1 SINE B4 3 161 -4 5 1157 323 254 17 76 chr1 75026368 75026431 -122169001 + L1ME3A LINE L1 5523 5582 -591 5 1157 3263 50 10 0 chr1 75026431 75026827 -122168605 - MTB LTR MaLR 0 400 1 5 1157 323 261 16 73 chr1 75026827 75026901 -122168531 + L1ME3A LINE L1 5583 5653 -791 5 1157 246 274 105 0 chr1 75026989 75027084 -122168348 + L1ME3A LINE L1 5883 5987 -186 5 1157 1025 159 102 5 chr1 75027154 75027350 -122168082 - B3 SINE B2 -1 215 1 5 1157 623 214 0 0 chr1 75027464 75027576 -122167856 - B1F2 SINE Alu 0 149 38 5 1157 444 214 10 10 chr1 75027787 75027886 -122167546 + L1MB7 LINE L1 5689 5787 -397 6 1157 338 304 0 37 chr1 75027887 75027969 -122167463 + RSINE1 SINE B4 3 81 -84 6 1157 23 68 0 0 chr1 75028035 75028079 -122167353 + AT_rich Low_complexity Low_complexity 1 44 0 6 1157 602 260 8 0 chr1 75028087 75028210 -122167222 + RSINE1 SINE B4 42 165 0 6 1157 753 199 20 0 chr1 75028236 75028382 -122167050 + B1_Mur2 SINE Alu 1 149 0 6 1157 561 298 111 56 chr1 75028389 75028695 -122166737 + L1MB7 LINE L1 5772 6094 -90 6 1157 681 243 70 74 chr1 75028707 75028951 -122166481 - B4A SINE B4 -48 244 2 6 1157 245 330 58 25 chr1 75029064 75029185 -122166247 + MIRb SINE MIR 24 148 -120 6 1157 244 216 0 0 chr1 75029198 75029249 -122166183 + ID4_ SINE ID 3 53 -30 6 1157 1015 74 7 0 chr1 75029249 75029384 -122166048 + MTB_Mm LTR MaLR 1 136 -271 6 1157 3363 41 5 0 chr1 75029384 75029778 -122165654 + MTA_Mm LTR MaLR 1 396 0 6 1157 8115 62 4 70 chr1 75029778 75030952 -122164480 + MTA_Mm-int LTR MaLR 1 1097 -1 6 1157 3441 33 8 0 chr1 75030953 75031346 -122164086 + MTA_Mm LTR MaLR 1 396 0 6 1157 405 0 0 0 chr1 75031364 75031409 -122164023 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1157 2075 70 3 71 chr1 75031585 75031893 -122163539 + L1_Mus2 LINE L1 6280 6566 0 7 1157 228 294 0 0 chr1 75031961 75032012 -122163420 + MIRb SINE MIR 210 260 -8 6 1157 316 254 56 0 chr1 75032068 75032139 -122163293 - L2c LINE L2 -62 3325 3251 7 1157 212 264 95 27 chr1 75032529 75032603 -122162829 - B1F1 SINE Alu -65 84 6 7 1157 1254 157 58 41 chr1 75032714 75032989 -122162443 + RLTR9D LTR ERVK 12 300 -109 7 1157 224 182 0 0 chr1 75033234 75033278 -122162154 + B1_Mus1 SINE Alu 16 59 -89 7 1157 304 267 0 0 chr1 75033801 75033861 -122161571 - ID4_ SINE ID 0 83 24 7 1157 278 208 19 19 chr1 75034182 75034236 -122161196 - RSINE1 SINE B4 -104 61 8 7 1157 419 0 20 0 chr1 75034294 75034345 -122161087 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1157 674 248 6 92 chr1 75034398 75034571 -122160861 - RSINE1 SINE B4 0 165 8 7 1157 430 257 72 18 chr1 75034804 75034915 -122160517 + PB1D10 SINE Alu 1 117 0 8 1157 641 244 87 52 chr1 75034917 75035090 -122160342 + B3A SINE B2 4 182 -16 8 1157 24 0 0 0 chr1 75035345 75035369 -122160063 + AT_rich Low_complexity Low_complexity 1 24 0 8 1157 794 150 7 73 chr1 75035371 75035498 -122159934 - B1_Mus1 SINE Alu -7 141 24 8 1157 1447 45 67 0 chr1 75035498 75035677 -122159755 + B2_Mm1t SINE B2 1 191 -2 8 1157 794 150 7 73 chr1 75035677 75035700 -122159732 - B1_Mus1 SINE Alu -125 23 1 8 1157 3503 272 67 33 chr1 75035854 75036892 -122158540 + Lx8 LINE L1 6400 7472 -1 8 1157 24 0 0 0 chr1 75036893 75036917 -122158515 + AT_rich Low_complexity Low_complexity 1 24 0 8 1157 237 317 67 0 chr1 75036932 75036992 -122158440 + B1F2 SINE Alu 1 64 -85 8 1157 1110 84 0 0 chr1 75037003 75037145 -122158287 + B1_Mus1 SINE Alu 5 146 -2 8 1157 384 211 0 0 chr1 75037168 75037239 -122158193 + ID_B1 SINE B4 129 199 -25 8 1157 326 182 61 61 chr1 75037212 75037294 -122158138 + B1F1 SINE Alu 66 147 -2 9 1157 279 0 0 0 chr1 75039118 75039149 -122156283 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1157 215 29 0 81 chr1 75039185 75039209 -122156223 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 9 1157 1161 61 0 33 chr1 75039209 75039362 -122156070 - B1_Mus1 SINE Alu 0 148 1 9 1157 215 29 0 81 chr1 75039362 75039374 -122156058 + (TTTTC)n Simple_repeat Simple_repeat 2 12 0 9 1157 202 164 0 35 chr1 75039519 75039576 -122155856 + CT-rich Low_complexity Low_complexity 3 57 0 9 1157 2370 93 12 3 chr1 75039611 75039934 -122155498 - ORR1A2 LTR MaLR -1 326 1 9 1157 593 261 44 32 chr1 75040372 75040530 -122154902 + RSINE1 SINE B4 6 165 0 9 1157 542 242 41 45 chr1 75040645 75040830 -122154602 + B4A SINE B4 12 197 -95 9 1157 1519 54 11 0 chr1 75040891 75041077 -122154355 + B2_Mm2 SINE B2 2 189 -6 9 1157 794 278 228 53 chr1 75041077 75041608 -122153824 - L2 LINE L2 -611 2808 2185 1 1157 391 169 44 78 chr1 75041643 75041733 -122153699 + RSINE1 SINE B4 1 87 -205 1 1157 258 260 56 65 chr1 75041733 75041750 -122153682 + B3A SINE B2 1 106 -92 1 1157 376 363 133 86 chr1 75041754 75042318 -122153114 - L2 LINE L2 -1481 1938 1325 1 1157 210 128 0 49 chr1 75042318 75042359 -122153073 + B1_Mus1 SINE Alu 9 47 -101 1 1157 531 45 0 0 chr1 75042359 75042425 -122153007 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 1 1157 376 363 133 86 chr1 75042425 75042815 -122152617 - L2 LINE L2 -2095 1324 896 1 1157 294 368 51 26 chr1 75042852 75043008 -122152424 - MER20 DNA MER1_type -59 160 1 1 1157 710 351 84 13 chr1 75043033 75043484 -122151948 - L2 LINE L2 -2624 795 313 1 1157 342 0 0 0 chr1 75043611 75043649 -122151783 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1157 515 271 90 0 chr1 75043656 75043778 -122151654 - RSINE1 SINE B4 -22 143 11 1 1157 1738 153 191 6 chr1 75043787 75044142 -122151290 + MTC LTR MaLR 1 421 0 1 1157 847 246 55 0 chr1 75044697 75044880 -122150552 + B3A SINE B2 3 195 -3 1 1157 1079 309 52 46 chr1 75045150 75045632 -122149800 + Lx8 LINE L1 6989 7473 0 1 1157 256 272 189 16 chr1 75045682 75045708 -122149724 - B4A SINE B4 -44 248 100 1 1157 544 214 0 30 chr1 75045708 75045809 -122149623 - PB1D10 SINE Alu -5 112 15 1 1157 659 210 14 7 chr1 75045951 75046090 -122149342 - B1F2 SINE Alu -9 140 1 1 1157 364 196 16 37 chr1 75046157 75046268 -122149164 - B4A SINE B4 0 292 193 1 1157 382 358 105 10 chr1 75046658 75046867 -122148565 - MIRb SINE MIR -6 262 34 1 1157 260 296 0 58 chr1 75046872 75046958 -122148474 - MIR SINE MIR -148 114 34 1 1157 387 0 0 0 chr1 75047625 75047668 -122147764 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1157 271 225 39 62 chr1 75048020 75048148 -122147284 - Tigger14a DNA MER2_type -43 281 157 1 1157 221 243 23 139 chr1 75048406 75048535 -122146897 + L2a LINE L2 3313 3426 0 1 1157 332 265 77 77 chr1 75048805 75048948 -122146484 - PB1D10 SINE Alu -6 143 1 1 1157 183 392 0 0 chr1 75048972 75049046 -122146386 + L2c LINE L2 3258 3331 -56 1 1157 227 95 0 45 chr1 75049059 75049103 -122146329 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 1 1157 451 238 48 0 chr1 75049105 75049210 -122146222 - PB1D10 SINE Alu 0 117 8 1 1157 1272 234 171 7 chr1 75049458 75049768 -122145664 - MTC LTR MaLR 0 421 61 1 1157 747 323 18 29 chr1 75049894 75050171 -122145261 + B4 SINE B4 6 279 -13 1 1157 253 219 16 0 chr1 75050199 75050263 -122145169 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1157 320 268 72 86 chr1 75050263 75050335 -122145097 + HAL1-3A_ME LINE L1 1976 2053 -805 1 1157 1140 59 0 0 chr1 75050335 75050470 -122144962 + B1_Mus2 SINE Alu 4 138 -9 1 1157 440 18 0 17 chr1 75050470 75050528 -122144904 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1157 320 268 72 86 chr1 75050528 75050593 -122144839 + HAL1-3A_ME LINE L1 2054 2111 -747 1 1157 1174 80 0 11 chr1 75051087 75051103 -122144329 + (GAA)n Simple_repeat Simple_repeat 3 18 0 1 1157 1373 45 0 16 chr1 75051103 75051285 -122144147 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 1 1157 1174 80 0 11 chr1 75051285 75051393 -122144039 + (GAA)n Simple_repeat Simple_repeat 1 108 0 1 1157 1557 17 0 0 chr1 75051393 75051573 -122143859 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1157 1174 80 0 11 chr1 75051573 75051625 -122143807 + (GAA)n Simple_repeat Simple_repeat 1 52 0 1 1157 24 32 0 0 chr1 75051916 75051947 -122143485 + AT_rich Low_complexity Low_complexity 1 31 0 1 1157 226 200 69 10 chr1 75053356 75053457 -122141975 + (TATAA)n Simple_repeat Simple_repeat 2 108 0 1 1157 186 43 0 0 chr1 75053618 75053641 -122141791 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1157 1172 68 0 7 chr1 75054793 75054941 -122140491 + B1_Mus2 SINE Alu 1 147 0 1 1157 274 211 41 27 chr1 75054957 75055030 -122140402 - L2a LINE L2 -38 3388 3315 1 1157 336 24 0 0 chr1 75055090 75055131 -122140301 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1157 271 312 67 17 chr1 75055160 75055282 -122140150 + PB1D10 SINE Alu 5 129 -20 1 1157 481 221 60 34 chr1 75055336 75055453 -122139979 + RSINE1 SINE B4 8 127 -38 1 1157 1284 113 11 0 chr1 75055929 75056106 -122139326 + B2_Mm1t SINE B2 1 179 -14 1 1157 410 106 324 63 chr1 75056157 75056268 -122139164 + B2_Mm2 SINE B2 47 186 -9 1 1157 260 70 23 0 chr1 75056782 75056825 -122138607 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1157 312 83 0 0 chr1 75058019 75058067 -122137365 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1157 1022 122 7 7 chr1 75058380 75058528 -122136904 + B1_Mus1 SINE Alu 1 148 0 1 1157 351 0 0 0 chr1 75059364 75059403 -122136029 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1157 405 0 0 0 chr1 75059403 75059447 -122135985 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1157 417 278 56 0 chr1 75059504 75059612 -122135820 + B1_Mur1 SINE Alu 5 118 -31 1 1157 454 254 82 7 chr1 75061943 75062078 -122133354 - ID_B1 SINE B4 0 224 80 1 1157 479 239 23 86 chr1 75063109 75063237 -122132195 + PB1D7 SINE Alu 1 120 0 1 1157 921 127 13 0 chr1 75063871 75064029 -122131403 - URR1A DNA MER1_type 0 226 67 1 1157 189 107 0 0 chr1 75064043 75064071 -122131361 + (TGG)n Simple_repeat Simple_repeat 3 30 0 1 1157 357 191 29 0 chr1 75064071 75064139 -122131293 + PB1D9 SINE Alu 16 85 -35 1 1157 261 0 0 0 chr1 75064139 75064168 -122131264 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1157 810 0 0 0 chr1 75064168 75064257 -122131175 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1157 325 182 13 25 chr1 75064258 75064337 -122131095 - URR1A DNA MER1_type -148 78 1 1 1157 315 197 171 0 chr1 75064953 75065029 -122130403 + B1F1 SINE Alu 26 114 -35 1 1157 1171 88 0 0 chr1 75065194 75065341 -122130091 + B1_Mus1 SINE Alu 2 148 0 1 1157 423 56 0 0 chr1 75065350 75065404 -122130028 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 1157 970 182 44 11 chr1 75065539 75065722 -122129710 - B3 SINE B2 -6 210 22 1 1157 546 29 0 0 chr1 75065918 75065986 -122129446 + (CTA)n Simple_repeat Simple_repeat 2 69 0 1 1157 574 143 22 15 chr1 75065984 75066119 -122129313 + CT-rich Low_complexity Low_complexity 1 136 0 1 1157 490 252 84 0 chr1 75066440 75066547 -122128885 + ID_B1 SINE B4 99 214 -10 1 1157 225 94 0 0 chr1 75066547 75066579 -122128853 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1157 342 243 14 0 chr1 75066661 75066735 -122128697 - PB1D7 SINE Alu -28 92 18 1 1157 1314 136 22 18 chr1 75067116 75067340 -122128092 - URR1A DNA MER1_type -1 225 1 1 1157 234 216 66 26 chr1 75067466 75067542 -122127890 + L2c LINE L2 3269 3347 -40 1 1157 451 286 7 22 chr1 75067675 75067811 -122127621 + B4A SINE B4 98 231 -61 1 1157 1345 85 23 0 chr1 75067865 75068042 -122127390 + B2_Mm2 SINE B2 1 181 -14 1 1157 432 35 316 9 chr1 75068070 75068184 -122127248 + B2_Mm2 SINE B2 47 195 0 1 1157 267 271 57 0 chr1 75068180 75068250 -122127182 + B4A SINE B4 50 123 -169 1 1157 387 0 0 0 chr1 75068396 75068439 -122126993 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1157 543 170 0 0 chr1 75069529 75069629 -122125803 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1157 1545 47 21 0 chr1 75072069 75072259 -122123173 + B2_Mm2 SINE B2 2 195 0 1 1157 569 244 0 0 chr1 75072788 75072907 -122122525 - B1_Mur3 SINE Alu -25 124 6 1 1157 488 243 28 0 chr1 75073039 75073146 -122122286 + PB1D10 SINE Alu 2 111 -6 1 1157 240 276 13 13 chr1 75073146 75073223 -122122209 + GA-rich Low_complexity Low_complexity 4 80 0 1 1157 532 91 13 0 chr1 75073569 75073646 -122121786 + B3 SINE B2 2 79 -137 1 1157 281 244 67 44 chr1 75073646 75073659 -122121773 + B4 SINE B4 2 93 -199 1 1157 2656 64 209 60 chr1 75074754 75074845 -122120587 + RLTR1B LTR ERV1 1 91 -421 1 1157 1354 61 72 0 chr1 75074845 75075026 -122120406 + B2_Mm2 SINE B2 2 195 0 1 1157 2656 64 209 60 chr1 75075026 75075380 -122120052 + RLTR1B LTR ERV1 92 512 0 1 1157 873 173 7 0 chr1 75075386 75075525 -122119907 - B1_Mur3 SINE Alu -8 141 2 1 1157 679 251 80 60 chr1 75075534 75075733 -122119699 - B3 SINE B2 0 216 14 1 1157 718 203 8 0 chr1 75075750 75075883 -122119549 + B1F SINE Alu 11 144 -5 1 1157 336 279 87 0 chr1 75076012 75076116 -122119316 - B1F1 SINE Alu 0 149 37 1 1157 332 259 17 67 chr1 75076185 75076305 -122119127 + PB1D10 SINE Alu 1 114 -3 1 1157 395 346 14 14 chr1 75076310 75076498 -122118934 + Charlie10 DNA MER1_type 14 205 -2617 1 1157 252 0 0 0 chr1 75077289 75077317 -122118115 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1157 349 326 0 0 chr1 75077332 75077427 -122118005 - RSINE1 SINE B4 -66 99 5 1 1157 230 100 40 0 chr1 75077439 75077489 -122117943 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 1 1157 1234 41 7 0 chr1 75077490 75077636 -122117796 - B1_Mm SINE Alu 0 147 1 1 1157 606 223 146 6 chr1 75077636 75077794 -122117638 - B4A SINE B4 -62 230 51 1 1157 519 248 72 0 chr1 75077796 75077921 -122117511 + RSINE1 SINE B4 4 137 -28 1 1157 325 314 36 22 chr1 75078113 75078128 -122117304 - ID_B1 SINE B4 -7 217 82 1 1157 658 193 34 0 chr1 75078128 75078247 -122117185 - B1_Mur3 SINE Alu -26 123 1 1 1157 189 0 0 0 chr1 75079042 75079063 -122116369 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1157 620 249 181 58 chr1 75079848 75079942 -122115490 + B4A SINE B4 2 91 -201 1 1157 1367 97 11 0 chr1 75079942 75080128 -122115304 + B2_Mm1t SINE B2 2 189 -4 1 1157 620 249 181 58 chr1 75080128 75080276 -122115156 + B4A SINE B4 92 274 -18 1 1157 585 0 0 0 chr1 75080286 75080351 -122115081 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1157 513 296 72 6 chr1 75081163 75081343 -122114089 + B4A SINE B4 1 192 -100 2 1157 482 255 0 28 chr1 75081787 75081896 -122113536 - PB1D7 SINE Alu -6 114 9 2 1157 21 36 0 0 chr1 75081924 75081952 -122113480 + AT_rich Low_complexity Low_complexity 1 28 0 2 1157 526 290 97 0 chr1 75081964 75082109 -122113323 - RSINE1 SINE B4 -4 161 3 2 1157 1121 249 38 8 chr1 75082298 75082565 -122112867 + MTEa LTR MaLR 1 275 -104 2 1157 513 0 0 0 chr1 75082691 75082748 -122112684 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1157 187 348 65 0 chr1 75083370 75083462 -122111970 + MIRb SINE MIR 92 189 -79 2 1157 1672 228 16 13 chr1 75083463 75083836 -122111596 + ORR1D1 LTR MaLR 1 374 0 2 1157 344 279 13 0 chr1 75084036 75084115 -122111317 - B1_Mur3 SINE Alu -64 85 6 2 1157 1655 271 34 68 chr1 75084141 75084667 -122110765 + Lx8 LINE L1 6120 6627 -846 2 1157 296 203 15 15 chr1 75084667 75084732 -122110700 + MLT1F LTR MaLR 389 453 -95 2 1157 459 314 132 33 chr1 75084736 75085039 -122110393 - L2 LINE L2 -658 2761 2429 2 1157 567 243 35 0 chr1 75085119 75085263 -122110169 - B1F SINE Alu 0 149 1 2 1157 265 214 86 0 chr1 75085473 75085543 -122109889 + B1F1 SINE Alu 13 88 -61 2 1157 182 356 55 33 chr1 75085918 75086101 -122109331 - L2 LINE L2 -528 2891 2705 2 1157 237 33 0 0 chr1 75086557 75086587 -122108845 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1157 320 262 0 59 chr1 75087455 75087540 -122107892 + B1_Mur2 SINE Alu 23 102 -47 2 1157 745 157 14 50 chr1 75087619 75087760 -122107672 - B1_Mur1 SINE Alu 0 149 14 2 1157 339 259 146 7 chr1 75088334 75088478 -122106954 + RSINE1 SINE B4 2 165 0 2 1157 546 152 31 0 chr1 75088525 75088787 -122106645 + (CA)n Simple_repeat Simple_repeat 1 270 0 2 1157 530 191 135 15 chr1 75088791 75088924 -122106508 - B1F SINE Alu 0 149 1 2 1157 189 107 0 0 chr1 75089009 75089037 -122106395 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1157 23 33 0 0 chr1 75089069 75089099 -122106333 + AT_rich Low_complexity Low_complexity 1 30 0 2 1157 459 0 0 0 chr1 75089104 75089155 -122106277 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1157 518 241 9 0 chr1 75089155 75089263 -122106169 - RSINE1 SINE B4 -45 120 12 2 1157 471 35 0 0 chr1 75089269 75089326 -122106106 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1157 225 0 0 0 chr1 75089329 75089354 -122106078 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1157 1054 100 0 24 chr1 75089354 75089518 -122105914 - B2_Mm2 SINE B2 -34 161 2 2 1157 375 280 21 57 chr1 75089519 75089659 -122105773 - B1F1 SINE Alu 0 149 15 2 1157 251 340 0 75 chr1 75089659 75089678 -122105754 - ID_B1 SINE B4 0 224 78 2 1157 720 33 0 0 chr1 75089681 75089772 -122105660 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1157 185 339 80 63 chr1 75090248 75090487 -122104945 - L2c LINE L2 -222 3165 2923 2 1157 215 219 0 0 chr1 75090688 75090729 -122104703 + RSINE1 SINE B4 2 42 -123 2 1157 668 267 60 32 chr1 75092773 75092990 -122102442 - ID_B1 SINE B4 0 224 2 2 1157 824 102 6 98 chr1 75093508 75093671 -122101761 - URR1A DNA MER1_type 0 226 79 2 1157 332 135 284 0 chr1 75093731 75093805 -122101627 - URR1A DNA MER1_type -131 95 1 2 1157 837 235 39 19 chr1 75093810 75094018 -122101414 + B3 SINE B2 1 212 -4 2 1157 188 34 0 33 chr1 75094303 75094317 -122101115 + (TAA)n Simple_repeat Simple_repeat 2 15 0 2 1157 1654 22 0 0 chr1 75094317 75094502 -122100930 + B2_Mm1a SINE B2 2 186 -7 2 1157 188 34 0 33 chr1 75094502 75094517 -122100915 + (TAA)n Simple_repeat Simple_repeat 1 15 0 2 1157 883 243 46 9 chr1 75094725 75094941 -122100491 - MER58A DNA MER1_type 0 224 1 2 1157 524 254 145 0 chr1 75095404 75095542 -122099890 + RSINE1 SINE B4 4 161 -4 2 1157 229 320 68 76 chr1 75096694 75096826 -122098606 - MIRb SINE MIR -120 148 18 2 1157 1602 37 21 0 chr1 75096837 75097026 -122098406 + B2_Mm1a SINE B2 1 193 0 2 1157 327 327 0 10 chr1 75097129 75097231 -122098201 + PB1D10 SINE Alu 14 114 -3 2 1157 1255 155 43 0 chr1 75097231 75097438 -122097994 + B3 SINE B2 1 216 0 2 1157 271 301 117 0 chr1 75097655 75097758 -122097674 + PB1D7 SINE Alu 6 120 0 2 1157 478 258 32 0 chr1 75097830 75097954 -122097478 + ID_B1 SINE B4 97 224 0 2 1157 439 177 13 0 chr1 75099133 75099212 -122096220 + ID2 SINE ID 4 83 0 2 1157 266 293 117 28 chr1 75099332 75099494 -122095938 + B3A SINE B2 36 201 -15 2 1157 1202 172 5 23 chr1 75099804 75100018 -122095414 + B3 SINE B2 1 210 -6 2 1157 523 254 32 0 chr1 75100103 75100229 -122095203 - B1F1 SINE Alu -6 143 14 2 1157 838 145 20 20 chr1 75100254 75100402 -122095030 - B1_Mus1 SINE Alu 0 148 1 2 1157 978 241 67 8 chr1 75100458 75100696 -122094736 + B4A SINE B4 1 252 -40 2 1157 276 118 118 0 chr1 75100722 75100773 -122094659 + B1_Mus2 SINE Alu 75 131 -16 2 1157 571 130 9 37 chr1 75100978 75101090 -122094342 - B1_Mur4 SINE Alu -1 149 9 2 1157 358 223 117 0 chr1 75101172 75101266 -122094166 - B1_Mur3 SINE Alu -43 106 2 2 1157 235 342 38 0 chr1 75101206 75101285 -122094147 - B4 SINE B4 -146 146 65 2 1157 703 246 0 0 chr1 75101276 75101414 -122094018 - ID_B1 SINE B4 -7 217 80 2 1157 386 162 0 42 chr1 75101452 75101523 -122093909 - B1_Mur2 SINE Alu 0 149 82 2 1157 248 100 300 0 chr1 75101624 75101684 -122093748 + PB1D9 SINE Alu 43 120 0 2 1157 501 219 257 12 chr1 75101697 75101868 -122093564 + ID_B1 SINE B4 4 216 -8 2 1158 757 126 102 0 chr1 75118160 75118287 -122077145 + B1_Mus1 SINE Alu 8 147 -1 2 1158 252 0 0 0 chr1 75118290 75118318 -122077114 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2 1158 483 265 29 0 chr1 75118335 75118437 -122076995 + RSINE1 SINE B4 33 137 -28 2 1158 1035 52 0 63 chr1 75118508 75118651 -122076781 + B1_Mus1 SINE Alu 3 136 -12 2 1158 189 0 0 0 chr1 75118652 75118673 -122076759 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1158 266 258 16 0 chr1 75118686 75118748 -122076684 + ID_B1 SINE B4 81 143 -81 2 1158 436 273 89 105 chr1 75118753 75118969 -122076463 + B4 SINE B4 2 224 -68 2 1158 1014 108 68 11 chr1 75119109 75119286 -122076146 + B2_Mm2 SINE B2 1 187 -8 2 1158 228 155 155 0 chr1 75119310 75119368 -122076064 - YREP_Mm Unknown Unknown -1570 242 176 2 1158 1039 137 65 0 chr1 75119779 75119947 -122075485 + B2_Mm1t SINE B2 2 180 -13 2 1158 213 219 0 0 chr1 75119993 75120034 -122075398 + B2_Mm2 SINE B2 47 87 -108 2 1158 612 198 0 0 chr1 75120894 75121010 -122074422 + PB1D10 SINE Alu 1 116 -1 2 1158 225 296 56 0 chr1 75122011 75122082 -122073350 + L2c LINE L2 3299 3373 -14 2 1158 537 276 55 84 chr1 75122612 75122814 -122072618 + B3A SINE B2 3 198 0 2 1158 727 274 42 28 chr1 75123320 75123534 -122071898 - MER20 DNA MER1_type -2 217 1 2 1158 419 325 35 0 chr1 75123653 75123767 -122071665 + PB1D7 SINE Alu 1 118 -2 2 1158 583 186 67 8 chr1 75123877 75123996 -122071436 - B1_Mur1 SINE Alu 0 149 24 2 1158 872 144 57 14 chr1 75124019 75124030 -122071402 - B1_Mur4 SINE Alu -2 148 139 2 1158 225 0 0 0 chr1 75124030 75124055 -122071377 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1158 872 144 57 14 chr1 75124055 75124184 -122071248 - B1_Mur4 SINE Alu -12 138 2 2 1158 605 316 20 15 chr1 75124259 75124455 -122070977 + MTD LTR MaLR 6 202 -219 2 1158 1146 82 0 0 chr1 75124461 75124607 -122070825 + B1_Mus2 SINE Alu 2 147 0 2 1158 252 86 0 0 chr1 75124613 75124648 -122070784 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2 1158 679 227 11 9 chr1 75124744 75124895 -122070537 + MTD LTR MaLR 251 404 -17 2 1158 231 216 19 19 chr1 75124898 75124950 -122070482 + L2b LINE L2 3324 3375 0 2 1158 219 188 62 0 chr1 75125622 75125670 -122069762 + L2b LINE L2 3077 3127 -248 2 1158 203 364 100 16 chr1 75126426 75126616 -122068816 + L2c LINE L2 2940 3145 -242 2 1158 725 258 6 6 chr1 75126628 75126784 -122068648 + ID_B1 SINE B4 82 241 -51 2 1158 996 238 67 30 chr1 75126800 75127069 -122068363 + Lx8 LINE L1 7054 7332 -141 2 1158 1225 55 0 7 chr1 75127098 75127246 -122068186 + B1_Mus2 SINE Alu 1 147 0 2 1158 243 23 68 0 chr1 75127252 75127296 -122068136 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1158 225 274 26 40 chr1 75127694 75127770 -122067662 + B4A SINE B4 2 76 -216 2 1158 226 285 145 55 chr1 75127919 75128064 -122067368 + RMER2 LTR ERV1 404 561 -6 2 1158 745 239 0 21 chr1 75128028 75128169 -122067263 - ID_B1 SINE B4 -5 219 82 2 1158 1351 94 11 0 chr1 75128418 75128609 -122066823 - B2_Mm1t SINE B2 0 193 1 2 1158 244 280 61 51 chr1 75128611 75128709 -122066723 - ID_B1 SINE B4 -42 182 84 2 1158 504 314 116 14 chr1 75130930 75131137 -122064295 - MER20B DNA MER1_type -191 592 365 2 1158 1020 167 187 7 chr1 75131178 75131467 -122063965 - Lx9 LINE L1 -7 7637 7297 2 1158 244 316 49 39 chr1 75131538 75131640 -122063792 + PB1D9 SINE Alu 10 112 -8 2 1158 201 133 0 0 chr1 75133651 75133681 -122061751 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2 1158 849 67 208 0 chr1 75133681 75133801 -122061631 - B1_Mus2 SINE Alu 0 147 3 3 1158 505 291 67 0 chr1 75134402 75134536 -122060896 + B1F SINE Alu 1 143 -6 3 1158 337 308 34 101 chr1 75134962 75135081 -122060351 + B1F2 SINE Alu 1 111 -38 3 1158 456 107 147 0 chr1 75135103 75135178 -122060254 - B1_Mur2 SINE Alu -12 137 52 3 1158 882 263 52 60 chr1 75135190 75135420 -122060012 + B4 SINE B4 12 242 -50 3 1158 1440 88 5 0 chr1 75135420 75135612 -122059820 + B2_Mm1a SINE B2 1 193 0 3 1158 882 263 52 60 chr1 75135612 75135648 -122059784 + B4 SINE B4 243 276 -16 3 1158 297 109 0 0 chr1 75135648 75135694 -122059738 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1158 821 127 93 43 chr1 75135755 75135895 -122059537 + B1_Mus1 SINE Alu 1 147 -1 3 1158 558 259 23 15 chr1 75136620 75136753 -122058679 + B1F1 SINE Alu 6 139 -10 3 1158 1201 81 121 0 chr1 75136853 75137026 -122058406 - B2_Mm2 SINE B2 0 195 2 3 1158 245 259 19 0 chr1 75137167 75137221 -122058211 + ID SINE ID 2 56 -168 3 1158 348 24 0 0 chr1 75137423 75137464 -122057968 + (CCA)n Simple_repeat Simple_repeat 1 41 0 3 1158 23 0 0 0 chr1 75139369 75139392 -122056040 + GC_rich Low_complexity Low_complexity 1 23 0 3 1158 207 254 17 17 chr1 75139415 75139475 -122055957 + (CGG)n Simple_repeat Simple_repeat 2 61 0 3 1158 234 0 0 0 chr1 75140167 75140193 -122055239 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1158 206 180 32 32 chr1 75141177 75141240 -122054192 + (CTGTG)n Simple_repeat Simple_repeat 3 65 0 3 1158 382 314 63 14 chr1 75141972 75142114 -122053318 + B1F2 SINE Alu 1 149 0 3 1158 1456 143 5 0 chr1 75142566 75142776 -122052656 - B3 SINE B2 -4 212 2 3 1158 607 209 36 29 chr1 75142779 75142917 -122052515 - ID_B1 SINE B4 -2 222 84 3 1158 252 0 0 0 chr1 75143759 75143787 -122051645 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 3 1158 414 0 0 0 chr1 75144910 75144956 -122050476 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1158 582 138 43 0 chr1 75144958 75145052 -122050380 - PB1D9 SINE Alu -12 108 11 3 1158 384 250 89 0 chr1 75144964 75145076 -122050356 - B4 SINE B4 -101 191 70 3 1158 398 260 37 37 chr1 75145142 75145250 -122050182 + PB1D10 SINE Alu 10 117 0 3 1158 279 0 0 0 chr1 75145951 75145982 -122049450 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1158 474 18 0 0 chr1 75146067 75146122 -122049310 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 3 1158 209 294 102 63 chr1 75146215 75146342 -122049090 + L3 LINE CR1 4082 4213 -276 3 1158 450 267 9 0 chr1 75146436 75146541 -122048891 - PB1D10 SINE Alu 0 117 12 3 1158 710 173 251 0 chr1 75146711 75146890 -122048542 - URR1A DNA MER1_type 0 226 3 3 1158 1171 75 0 0 chr1 75146933 75147079 -122048353 + B1_Mus1 SINE Alu 3 148 0 3 1158 534 152 0 0 chr1 75147079 75147171 -122048261 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1158 904 274 76 73 chr1 75147459 75147814 -122047618 - MLT1A1 LTR MaLR -6 402 47 3 1158 247 365 132 23 chr1 75148043 75148057 -122047375 + ID_B1 SINE B4 56 198 -26 3 1158 428 322 43 0 chr1 75148057 75148172 -122047260 + B1F2 SINE Alu 1 120 -29 3 1158 507 283 16 8 chr1 75148229 75148350 -122047082 - ID_B1 SINE B4 -10 214 93 3 1158 711 234 44 0 chr1 75148362 75148499 -122046933 - B1_Mur1 SINE Alu -6 143 1 3 1158 255 344 131 89 chr1 75148564 75148614 -122046818 + B4 SINE B4 27 74 -218 3 1158 516 72 0 0 chr1 75148614 75148683 -122046749 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 3 1158 1494 33 0 0 chr1 75148683 75148863 -122046569 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1158 264 291 109 104 chr1 75148863 75149091 -122046341 + RSINE1 SINE B4 75 271 -21 3 1158 325 292 22 22 chr1 75149192 75149283 -122046149 + ID_B1 SINE B4 67 157 -67 3 1158 239 300 88 11 chr1 75149223 75149314 -122046118 + B1F1 SINE Alu 17 114 -6 3 1158 528 258 16 16 chr1 75149326 75149448 -122045984 + ID_B1 SINE B4 93 214 -10 3 1158 478 328 8 0 chr1 75149505 75149624 -122045808 - B1F2 SINE Alu -29 120 1 3 1158 636 254 31 43 chr1 75149620 75149814 -122045618 + B3 SINE B2 3 195 0 3 1158 340 250 12 0 chr1 75149801 75149885 -122045547 + ID_B1 SINE B4 140 224 0 3 1158 285 288 14 14 chr1 75150204 75150278 -122045154 - RSINE1 SINE B4 0 165 92 3 1158 187 29 0 79 chr1 75150311 75150349 -122045083 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1158 325 246 0 0 chr1 75150371 75150428 -122045004 + B1_Mus1 SINE Alu 7 63 -85 3 1158 191 88 0 29 chr1 75150469 75150504 -122044928 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 3 1158 21 0 0 0 chr1 75150522 75150543 -122044889 + AT_rich Low_complexity Low_complexity 1 21 0 3 1158 954 143 20 7 chr1 75150577 75150725 -122044707 - B1_Mur4 SINE Alu 0 150 1 3 1158 240 158 0 0 chr1 75150824 75150881 -122044551 + GA-rich Low_complexity Low_complexity 2 58 0 3 1158 328 314 39 111 chr1 75150965 75151244 -122044188 + ORR1E LTR MaLR 100 358 -1 3 1158 497 292 100 0 chr1 75151464 75151584 -122043848 + ID_B1 SINE B4 81 212 -12 3 1158 594 268 24 108 chr1 75152189 75152402 -122043030 - B3A SINE B2 -3 195 1 3 1158 268 289 47 47 chr1 75152532 75152681 -122042751 - HAL1 LINE L1 -2008 499 351 3 1158 407 333 28 0 chr1 75153006 75153103 -122042329 + PB1D10 SINE Alu 1 100 -17 3 1158 1205 82 13 1 chr1 75153103 75153293 -122042139 + B2_Mm1t SINE B2 3 195 0 3 1158 810 171 7 52 chr1 75153341 75153495 -122041937 + B1_Mm SINE Alu 1 147 0 3 1158 1229 61 0 0 chr1 75153502 75153649 -122041783 + B1_Mm SINE Alu 1 147 0 3 1158 437 254 21 113 chr1 75154238 75154380 -122041052 + MT2B LTR ERVL 136 264 -337 3 1158 988 109 7 7 chr1 75154277 75154416 -122041016 + B1_Mus1 SINE Alu 10 148 0 3 1158 217 349 30 0 chr1 75154446 75154512 -122040920 + ID4_ SINE ID 12 79 -4 3 1158 453 81 0 0 chr1 75154608 75154670 -122040762 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 3 1158 343 299 48 20 chr1 75154855 75154891 -122040541 + L1MD LINE L1 3047 3083 -3063 3 1158 771 168 34 34 chr1 75154891 75155039 -122040393 + B1_Mur4 SINE Alu 2 149 -1 3 1158 343 299 48 20 chr1 75155039 75155149 -122040283 + L1MD LINE L1 3084 3197 -2949 3 1158 285 261 15 0 chr1 75155154 75155219 -122040213 + ID4_ SINE ID 1 66 -17 3 1158 1071 110 7 0 chr1 75155495 75155641 -122039791 + B1_Mus1 SINE Alu 1 147 -1 3 1158 244 309 148 0 chr1 75156015 75156096 -122039336 + PB1D10 SINE Alu 1 93 -24 3 1158 212 0 0 35 chr1 75156105 75156134 -122039298 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1158 521 259 26 71 chr1 75156138 75156292 -122039140 + B1_Mur1 SINE Alu 1 147 -2 3 1158 617 224 57 57 chr1 75156300 75156475 -122038957 + ID_B1 SINE B4 50 224 0 3 1158 225 267 0 16 chr1 75156789 75156850 -122038582 + GA-rich Low_complexity Low_complexity 2 61 0 3 1158 333 0 0 0 chr1 75156878 75156915 -122038517 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 3 1158 1075 95 7 20 chr1 75156976 75157126 -122038306 + B1_Mus1 SINE Alu 1 148 0 3 1158 1646 171 194 14 chr1 75157212 75157562 -122037870 - MTC LTR MaLR -8 413 1 3 1158 252 0 0 0 chr1 75157640 75157668 -122037764 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1158 1203 65 51 45 chr1 75157678 75157855 -122037577 + B2_Mm1t SINE B2 2 179 -14 3 1158 1304 27 0 0 chr1 75157978 75158125 -122037307 + B1_Mm SINE Alu 1 147 0 3 1158 1156 68 7 0 chr1 75158159 75158305 -122037127 + B1_Mus1 SINE Alu 2 148 0 3 1158 225 159 0 0 chr1 75158326 75158370 -122037062 + T-rich Low_complexity Low_complexity 1 44 0 3 1158 347 110 390 10 chr1 75158381 75158481 -122036951 - B2_Mm2 SINE B2 -7 188 51 3 1158 1103 131 17 17 chr1 75158517 75158695 -122036737 - B2_Mm1t SINE B2 -14 179 2 3 1158 249 206 52 52 chr1 75158760 75158783 -122036649 - PB1D9 SINE Alu 0 120 101 3 1158 4335 13 13 0 chr1 75158783 75159259 -122036173 + LTRIS_Mm LTR ERV1 1 482 0 3 1158 249 206 52 52 chr1 75159259 75159312 -122036120 - PB1D9 SINE Alu -20 100 44 3 1158 297 0 0 0 chr1 75159383 75159416 -122036016 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1158 824 184 7 7 chr1 75159416 75159564 -122035868 - B1_Mur4 SINE Alu -1 149 2 3 1158 624 228 31 0 chr1 75159601 75159728 -122035704 - B1_Mur1 SINE Alu -9 140 10 3 1158 895 94 0 66 chr1 75159905 75160032 -122035400 + B1_Mus1 SINE Alu 3 123 -25 3 1158 197 65 32 0 chr1 75160032 75160063 -122035369 + (CAAAG)n Simple_repeat Simple_repeat 2 33 0 3 1158 1336 63 17 6 chr1 75160263 75160439 -122034993 + B2_Mm2 SINE B2 6 183 -12 3 1158 222 37 0 0 chr1 75160439 75160466 -122034966 + (GGA)n Simple_repeat Simple_repeat 3 29 0 3 1158 518 360 59 52 chr1 75160687 75161009 -122034423 + MLT1J LTR MaLR 49 347 -64 3 1158 1282 77 77 6 chr1 75161015 75161197 -122034235 - B2_Mm2 SINE B2 0 195 1 3 1158 725 182 0 75 chr1 75161291 75161451 -122033981 - B1_Mur3 SINE Alu -1 148 1 3 1158 212 104 40 40 chr1 75161459 75161509 -122033923 + T-rich Low_complexity Low_complexity 1 50 0 3 1158 1182 75 0 14 chr1 75161509 75161657 -122033775 - B1_Mus1 SINE Alu 0 148 3 3 1158 189 0 0 0 chr1 75161657 75161678 -122033754 + (TTC)n Simple_repeat Simple_repeat 2 22 0 3 1158 297 0 0 0 chr1 75161695 75161728 -122033704 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1158 443 262 222 0 chr1 75161728 75161854 -122033578 - RSINE1 SINE B4 -9 156 3 3 1158 241 333 64 0 chr1 75161952 75162030 -122033402 - ID4_ SINE ID 0 83 1 3 1158 388 286 0 19 chr1 75162038 75162145 -122033287 - PB1D10 SINE Alu -8 109 5 4 1158 274 307 60 17 chr1 75162052 75162168 -122033264 - ID_B1 SINE B4 -48 176 56 4 1158 1470 59 5 0 chr1 75162180 75162366 -122033066 - B2_Mm1t SINE B2 -6 187 1 4 1158 810 175 14 7 chr1 75162388 75162526 -122032906 - B1_Mur3 SINE Alu -1 148 10 4 1158 347 256 22 117 chr1 75162415 75162534 -122032898 - MT2B LTR ERVL -323 278 168 4 1158 2076 201 48 159 chr1 75162534 75163221 -122032211 - RMER19C LTR ERVK 0 611 1 4 1158 347 256 22 117 chr1 75163221 75163238 -122032194 - MT2B LTR ERVL -434 167 155 4 1158 246 353 0 0 chr1 75163420 75163522 -122031910 + (TG)n Simple_repeat Simple_repeat 1 102 0 4 1158 438 333 0 22 chr1 75163554 75163738 -122031694 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1158 246 325 0 116 chr1 75163756 75163885 -122031547 - B4A SINE B4 0 292 179 4 1158 216 97 0 0 chr1 75164619 75164650 -122030782 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1158 730 219 0 0 chr1 75164656 75164793 -122030639 - B1_Mur2 SINE Alu -12 137 1 4 1158 230 261 188 0 chr1 75166572 75166641 -122028791 - ID4_ SINE ID 0 83 2 4 1158 529 204 33 0 chr1 75166641 75166754 -122028678 - PB1D7 SINE Alu 0 120 1 4 1158 242 330 112 9 chr1 75166757 75166873 -122028559 - B1F1 SINE Alu -1 148 21 4 1158 210 336 106 0 chr1 75169624 75169737 -122025695 + MIRc SINE MIR 55 179 -89 4 1158 286 262 53 61 chr1 75169891 75170005 -122025427 - PB1 SINE Alu -4 123 11 4 1158 1266 34 0 7 chr1 75171698 75171847 -122023585 - B1_Mus1 SINE Alu 0 148 1 4 1158 454 214 10 10 chr1 75171875 75171974 -122023458 - B1_Mur1 SINE Alu -9 140 42 4 1158 229 231 0 55 chr1 75172825 75172880 -122022552 + L1MC LINE L1 5617 5668 -2214 4 1158 266 217 97 42 chr1 75173000 75173072 -122022360 + ID4_ SINE ID 2 77 -6 4 1158 632 65 11 32 chr1 75173201 75173296 -122022136 + B1_Mur4 SINE Alu 58 150 0 4 1158 716 262 26 37 chr1 75173525 75173715 -122021717 - B3A SINE B2 -10 188 1 4 1158 232 309 12 12 chr1 75175244 75175326 -122020106 + ID4 SINE ID 1 82 -1 4 1158 573 143 43 44 chr1 75175368 75175510 -122019922 - B1_Mur4 SINE Alu 0 150 1 4 1158 1177 87 127 0 chr1 75175660 75175833 -122019599 + B2_Mm2 SINE B2 1 195 0 4 1158 29 0 0 0 chr1 75175938 75175967 -122019465 + AT_rich Low_complexity Low_complexity 1 29 0 4 1158 943 211 0 131 chr1 75178674 75178711 -122016721 - B3 SINE B2 -15 201 169 4 1158 1102 95 0 0 chr1 75178711 75178858 -122016574 + B1_Mus2 SINE Alu 1 147 0 4 1158 943 211 0 131 chr1 75178858 75179049 -122016383 - B3 SINE B2 -48 168 3 4 1158 449 235 88 0 chr1 75179879 75179981 -122015451 - ID_B1 SINE B4 -14 210 100 4 1158 268 333 12 0 chr1 75179980 75180061 -122015371 - B4 SINE B4 -209 83 2 4 1158 409 330 27 70 chr1 75180110 75180296 -122015136 - L2a LINE L2 -39 3387 3210 4 1158 216 274 12 88 chr1 75180315 75180395 -122015037 + PB1D10 SINE Alu 42 115 -2 4 1158 186 125 0 59 chr1 75180402 75180453 -122014979 + GA-rich Low_complexity Low_complexity 1 48 0 4 1158 390 287 76 23 chr1 75180471 75180603 -122014829 + ID_B1 SINE B4 84 222 -2 4 1158 266 260 107 27 chr1 75180612 75180687 -122014745 + ID4_ SINE ID 3 83 0 4 1158 878 120 0 22 chr1 75180814 75180950 -122014482 + B1_Mur4 SINE Alu 8 140 -10 4 1158 412 299 31 95 chr1 75180950 75181032 -122014400 + MT2B LTR ERVL 168 371 -230 4 1158 230 370 65 0 chr1 75182032 75182140 -122013292 + MER91A DNA Tip100 40 154 -42 4 1158 1068 71 36 0 chr1 75183639 75183779 -122011653 + B1_Mus1 SINE Alu 4 148 0 4 1158 212 258 76 0 chr1 75184969 75185035 -122010397 - RSINE1 SINE B4 -93 72 2 4 1158 214 50 24 24 chr1 75185041 75185082 -122010350 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 4 1158 1096 90 0 7 chr1 75185082 75185227 -122010205 - B1_Mus1 SINE Alu 0 148 5 4 1158 762 146 65 7 chr1 75185273 75185411 -122010021 - B1_Mur3 SINE Alu -1 148 3 4 1158 688 209 64 7 chr1 75185449 75185589 -122009843 + B1_Mur3 SINE Alu 2 149 0 4 1158 1072 103 0 20 chr1 75185809 75185958 -122009474 + B1_Mus2 SINE Alu 2 147 0 4 1158 306 361 61 7 chr1 75186244 75186392 -122009040 + MIRb SINE MIR 26 181 -87 4 1158 28 61 0 0 chr1 75188272 75188321 -122007111 + GC_rich Low_complexity Low_complexity 1 49 0 4 1158 24 0 0 0 chr1 75188341 75188365 -122007067 + GC_rich Low_complexity Low_complexity 1 24 0 4 1158 270 278 87 32 chr1 75189719 75189825 -122005607 + B1F1 SINE Alu 10 121 -28 4 1158 712 139 150 30 chr1 75190066 75190199 -122005233 - B1_Mur1 SINE Alu 0 149 1 4 1158 1268 48 0 0 chr1 75190910 75191057 -122004375 + B1_Mus1 SINE Alu 2 148 0 4 1158 1122 83 14 0 chr1 75191082 75191227 -122004205 + B1_Mus2 SINE Alu 1 147 0 4 1158 698 189 41 14 chr1 75193399 75193544 -122001888 - B1F SINE Alu 0 149 1 4 1158 525 235 35 42 chr1 75193544 75193680 -122001752 - B1F1 SINE Alu -4 145 9 4 1158 242 293 0 39 chr1 75193629 75193707 -122001725 + YREP_Mm Unknown Unknown 258 332 -1480 4 1158 566 209 27 67 chr1 75193888 75194037 -122001395 - B1_Mur2 SINE Alu 0 149 7 4 1158 441 54 0 0 chr1 75197180 75197236 -121998196 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1158 373 250 208 0 chr1 75197247 75197367 -121998065 - B1F SINE Alu 0 149 5 4 1158 786 50 0 0 chr1 75199558 75199657 -121995775 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 4 1158 1198 69 0 0 chr1 75199658 75199803 -121995629 - B1_Mus1 SINE Alu -3 145 1 4 1158 585 64 0 0 chr1 75199936 75200014 -121995418 + (TATG)n Simple_repeat Simple_repeat 1 78 0 4 1158 351 0 0 0 chr1 75200034 75200073 -121995359 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 1158 747 233 56 17 chr1 75200074 75200253 -121995179 - B3 SINE B2 -30 186 1 4 1158 337 64 64 0 chr1 75200588 75200666 -121994766 + (TTTTG)n Simple_repeat Simple_repeat 3 85 0 4 1158 782 75 0 0 chr1 75200666 75200773 -121994659 - B1_Mus2 SINE Alu 0 147 41 4 1158 379 326 66 15 chr1 75200912 75201049 -121994383 - RSINE1 SINE B4 0 165 22 4 1158 582 240 16 0 chr1 75201069 75201194 -121994238 - B1_Mus1 SINE Alu 0 148 22 4 1158 331 284 20 88 chr1 75201079 75201226 -121994206 - MT2B LTR ERVL -310 291 155 4 1158 754 193 21 0 chr1 75201557 75201702 -121993730 - B1_Mur4 SINE Alu -1 149 2 4 1158 348 143 7 266 chr1 75201702 75201815 -121993617 - MT2B LTR ERVL -344 257 182 4 1158 550 153 20 0 chr1 75201718 75201816 -121993616 - B1_Mur3 SINE Alu -33 116 17 4 1158 23 68 0 0 chr1 75201823 75201867 -121993565 + AT_rich Low_complexity Low_complexity 1 44 0 4 1158 590 305 0 7 chr1 75201867 75202009 -121993423 - RSINE1 SINE B4 -3 162 22 4 1158 692 228 27 20 chr1 75202029 75202177 -121993255 - B1_Mur1 SINE Alu 0 149 1 4 1158 286 312 123 0 chr1 75202264 75202402 -121993030 - L2a LINE L2 -1 3425 3271 4 1158 599 342 86 90 chr1 75202718 75202825 -121992607 - L2a LINE L2 -606 2813 2719 4 1158 1261 41 0 0 chr1 75202825 75202970 -121992462 + B1_Mus2 SINE Alu 3 147 0 4 1158 599 342 86 90 chr1 75202970 75203565 -121991867 - L2a LINE L2 -701 2718 2116 4 1158 442 250 45 0 chr1 75203565 75203677 -121991755 - PB1D10 SINE Alu 0 117 1 4 1158 599 342 86 90 chr1 75203677 75203786 -121991646 - L2a LINE L2 -1304 2115 2004 4 1158 359 356 92 39 chr1 75203939 75204328 -121991104 + L2 LINE L2 2592 3001 -418 4 1158 602 244 0 30 chr1 75204591 75204726 -121990706 - ID_B1 SINE B4 0 224 94 4 1158 248 221 52 4 chr1 75205034 75205103 -121990329 - B1F SINE Alu -59 89 11 4 1158 612 203 8 8 chr1 75206187 75206306 -121989126 + MER5A1 DNA MER1_type 3 121 -45 4 1158 457 286 93 14 chr1 75206657 75206873 -121988559 - MIR SINE MIR -14 248 16 4 1158 339 278 119 8 chr1 75206857 75206991 -121988441 - MIR SINE MIR -81 181 33 4 1158 247 267 162 46 chr1 75208096 75208269 -121987163 + MIRb SINE MIR 42 234 -34 4 1158 195 42 0 0 chr1 75208828 75208852 -121986580 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1158 1191 37 0 0 chr1 75208852 75208987 -121986445 - B1_Mus1 SINE Alu -13 135 1 4 1158 186 238 191 3 chr1 75216560 75216649 -121978783 + MIR SINE MIR 22 130 -138 4 1158 297 247 27 0 chr1 75217054 75217127 -121978305 + ID SINE ID 1 75 -149 4 1158 324 282 0 2 chr1 75217701 75217795 -121977637 + ID4_ SINE ID 7 99 -53 4 1158 3081 43 54 15 chr1 75218453 75218858 -121976574 + BGLII LTR ERVK 1 421 0 4 1158 309 82 0 0 chr1 75218885 75218934 -121976498 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1158 553 293 91 31 chr1 75219000 75219254 -121976178 - MER68 LTR ERVL -292 271 3 4 1158 229 191 164 60 chr1 75219329 75219396 -121976036 + MLT1D LTR MaLR 1 74 -431 4 1158 258 105 0 0 chr1 75219407 75219445 -121975987 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1158 433 178 0 0 chr1 75219447 75219520 -121975912 - PB1D10 SINE Alu -10 107 35 4 1158 209 179 0 0 chr1 75219691 75219730 -121975702 + CT-rich Low_complexity Low_complexity 2 40 0 4 1158 429 20 0 0 chr1 75220655 75220705 -121974727 + (TTA)n Simple_repeat Simple_repeat 1 50 0 4 1158 605 260 0 52 chr1 75220705 75220848 -121974584 - B1_Mur1 SINE Alu -13 136 2 4 1158 312 137 0 0 chr1 75220928 75220979 -121974453 + (CACCAT)n Simple_repeat Simple_repeat 5 55 0 4 1158 677 244 19 12 chr1 75220980 75221142 -121974290 - RSINE1 SINE B4 0 165 3 4 1158 460 214 53 73 chr1 75221370 75221521 -121973911 + B1F SINE Alu 2 149 0 4 1158 588 188 118 15 chr1 75222555 75222690 -121972742 + B1F2 SINE Alu 1 149 0 5 1158 297 0 0 0 chr1 75223011 75223044 -121972388 + (GGA)n Simple_repeat Simple_repeat 3 35 0 5 1158 441 0 0 0 chr1 75223259 75223308 -121972124 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 1158 695 23 23 0 chr1 75223872 75223960 -121971472 + (GGGAGA)n Simple_repeat Simple_repeat 2 91 0 5 1158 358 295 69 40 chr1 75224051 75224224 -121971208 + MIR SINE MIR 6 183 -79 5 1158 198 0 0 0 chr1 75224353 75224375 -121971057 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1158 1361 57 0 6 chr1 75224752 75224929 -121970503 - B2_Mm2 SINE B2 -19 176 1 5 1158 453 271 0 9 chr1 75225194 75225302 -121970130 + PB1D10 SINE Alu 1 107 -10 5 1158 866 131 15 0 chr1 75225303 75225440 -121969992 - B1_Mus2 SINE Alu 0 147 9 5 1158 274 256 14 14 chr1 75225341 75225480 -121969952 - ORR1B1-int LTR MaLR -755 754 616 5 1158 264 326 108 47 chr1 75225350 75225498 -121969934 - RLTR25A LTR ERVK -531 572 416 5 1158 829 303 73 121 chr1 75226461 75226589 -121968843 - MTD LTR MaLR -64 355 207 5 1158 1272 75 21 31 chr1 75226589 75226782 -121968650 - B2_Mm2 SINE B2 -2 193 3 5 1158 829 303 73 121 chr1 75226782 75226803 -121968629 - MTD LTR MaLR -213 206 206 5 1158 243 0 0 0 chr1 75226803 75226830 -121968602 + (ATTTG)n Simple_repeat Simple_repeat 2 28 0 5 1158 1147 43 0 0 chr1 75226830 75226968 -121968464 - B1_Mus1 SINE Alu -9 139 2 5 1158 829 303 73 121 chr1 75226968 75227138 -121968294 - MTD LTR MaLR -213 206 49 5 1158 1889 194 44 5 chr1 75227138 75227543 -121967889 - MTC LTR MaLR 0 421 1 5 1158 829 303 73 121 chr1 75227543 75227592 -121967840 - MTD LTR MaLR -371 48 3 5 1158 445 298 29 35 chr1 75227756 75227930 -121967502 - MIRb SINE MIR -94 174 2 5 1158 410 208 135 0 chr1 75229053 75229149 -121966283 - PB1D10 SINE Alu -5 112 4 5 1158 197 0 0 67 chr1 75229153 75229183 -121966249 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1158 1300 67 39 17 chr1 75229192 75229373 -121966059 - B2_Mm2 SINE B2 -9 186 2 5 1158 314 248 215 0 chr1 75229391 75229512 -121965920 + B1_Mus2 SINE Alu 1 147 0 5 1158 560 264 44 44 chr1 75229553 75229735 -121965697 - B3A SINE B2 -16 182 1 5 1158 303 139 12 122 chr1 75229789 75229871 -121965561 - B1_Mus2 SINE Alu -1 146 74 5 1158 420 267 76 25 chr1 75230555 75230674 -121964758 - B1F SINE Alu -1 148 24 5 1158 1134 89 36 0 chr1 75230796 75230964 -121964468 - B2_Mm2 SINE B2 -19 176 3 5 1158 273 128 0 0 chr1 75231172 75231219 -121964213 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1158 378 0 0 0 chr1 75232026 75232068 -121963364 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1158 283 206 28 56 chr1 75232097 75232169 -121963263 - ID4_ SINE ID -8 75 6 5 1158 224 365 20 50 chr1 75232487 75232703 -121962729 - L2a LINE L2 -77 3349 3099 5 1158 182 0 107 0 chr1 75232965 75232993 -121962439 + (CCCCCG)n Simple_repeat Simple_repeat 2 32 0 5 1158 347 276 164 0 chr1 75234325 75234441 -121960991 - MIRb SINE MIR -84 184 50 5 1158 219 69 0 0 chr1 75234540 75234569 -121960863 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 5 1158 245 260 12 73 chr1 75234589 75234685 -121960747 + PB1D10 SINE Alu 18 108 -39 5 1158 947 221 15 5 chr1 75234693 75234889 -121960543 + ID_B1 SINE B4 4 201 -23 5 1158 1149 68 0 0 chr1 75234901 75235048 -121960384 - B1_Mm SINE Alu 0 147 1 5 1158 554 207 9 0 chr1 75235086 75235197 -121960235 + PB1D7 SINE Alu 9 120 0 5 144 231 322 68 17 chr1 75235221 75235338 -121960094 - L2b LINE L2 -15 3360 3238 5 1159 268 288 12 0 chr1 75235521 75235601 -121959831 - ID4_ SINE ID -2 81 1 5 1159 194 336 38 23 chr1 75235602 75235733 -121959699 - MIRb SINE MIR -8 260 128 5 1159 255 284 185 7 chr1 75236554 75236689 -121958743 - MIR SINE MIR -44 218 60 5 1159 300 240 27 0 chr1 75236690 75236765 -121958667 + ID4_ SINE ID 3 79 -4 5 1159 670 194 58 0 chr1 75236852 75236991 -121958441 + B1_Mur1 SINE Alu 3 149 0 5 1159 414 223 46 46 chr1 75237000 75237108 -121958324 + ID_B1 SINE B4 117 224 0 5 1159 1111 70 133 6 chr1 75237141 75237314 -121958118 + B2_Mm2 SINE B2 1 195 0 5 1159 228 326 29 43 chr1 75237413 75237551 -121957881 - RMER21A LTR ERV1 -106 841 706 5 1159 273 239 90 0 chr1 75238160 75238227 -121957205 - ID4_ SINE ID -6 77 5 5 1159 207 268 20 10 chr1 75238285 75238383 -121957049 + CT-rich Low_complexity Low_complexity 2 100 0 5 1159 210 98 59 0 chr1 75238471 75238522 -121956910 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 5 1159 512 235 95 58 chr1 75238557 75238747 -121956685 - B3A SINE B2 -1 197 1 5 1159 252 211 113 72 chr1 75238755 75238852 -121956580 - Lx8 LINE L1 -2 7471 7371 5 1159 1235 56 46 86 chr1 75238864 75239061 -121956371 - B2_Mm2 SINE B2 -5 190 2 5 1159 456 168 168 0 chr1 75239067 75239162 -121956270 - B4A SINE B4 -68 224 114 5 1159 1002 121 0 0 chr1 75239389 75239538 -121955894 - B1_Mur4 SINE Alu 0 150 2 5 1159 203 344 76 53 chr1 75239752 75239884 -121955548 - MIRb SINE MIR -25 243 109 5 1159 366 107 0 0 chr1 75245063 75245119 -121950313 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1159 984 107 30 0 chr1 75245448 75245616 -121949816 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 5 1159 1143 29 22 0 chr1 75245618 75245757 -121949675 - B1_Mus1 SINE Alu -6 142 1 5 1159 346 195 61 0 chr1 75246485 75246567 -121948865 + Lx6 LINE L1 7364 7450 -10 5 1159 315 0 0 0 chr1 75246581 75246616 -121948816 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1159 1152 92 0 6 chr1 75246628 75246793 -121948639 + B2_Mm2 SINE B2 1 164 -31 5 1159 260 242 136 0 chr1 75246832 75246898 -121948534 - ID2 SINE ID -8 75 1 5 1159 413 260 10 10 chr1 75246907 75247008 -121948424 - PB1D10 SINE Alu -6 111 11 5 1159 222 243 0 54 chr1 75246960 75247034 -121948398 - B4A SINE B4 -150 142 73 5 1159 359 207 8 51 chr1 75247542 75247659 -121947773 + GA-rich Low_complexity Low_complexity 3 114 0 5 1159 696 104 0 73 chr1 75247662 75247786 -121947646 + B1_Mus1 SINE Alu 34 148 0 5 1159 510 161 0 0 chr1 75247786 75247879 -121947553 + A-rich Low_complexity Low_complexity 1 93 0 5 1159 495 0 0 0 chr1 75248056 75248111 -121947321 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1159 371 73 0 18 chr1 75248706 75248762 -121946670 + (TATG)n Simple_repeat Simple_repeat 1 55 0 5 1159 1354 84 21 0 chr1 75251889 75252079 -121943353 - B2_Mm2 SINE B2 -1 194 1 5 1159 21 0 0 0 chr1 75252092 75252113 -121943319 + AT_rich Low_complexity Low_complexity 1 21 0 5 1159 1137 125 0 0 chr1 75253065 75253394 -121942038 + (TG)n Simple_repeat Simple_repeat 1 329 0 5 1159 283 229 72 18 chr1 75253686 75253797 -121941635 + PB1D10 SINE Alu 1 117 0 5 1159 525 254 13 27 chr1 75254246 75254396 -121941036 + B1F SINE Alu 2 149 0 5 1159 331 267 11 0 chr1 75255214 75255304 -121940128 + GA-rich Low_complexity Low_complexity 2 92 0 5 1159 219 36 0 0 chr1 75255355 75255383 -121940049 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1159 751 174 7 21 chr1 75255398 75255539 -121939893 - B1_Mus1 SINE Alu -9 139 1 5 1159 773 178 0 11 chr1 75255751 75255933 -121939499 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1159 936 156 0 0 chr1 75255975 75256155 -121939277 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1159 328 265 0 0 chr1 75256161 75256229 -121939203 - ID4 SINE ID -14 69 2 5 1159 1150 165 31 35 chr1 75256472 75256698 -121938734 + URR1B DNA MER1_type 1 225 0 5 1159 337 315 101 69 chr1 75257414 75257632 -121937800 + MIR SINE MIR 26 250 -12 5 1159 411 225 53 26 chr1 75257939 75258053 -121937379 - PB1D7 SINE Alu -1 119 3 5 1159 180 194 28 0 chr1 75258129 75258165 -121937267 + L2 LINE L2 1620 1656 -1763 5 1159 374 289 147 8 chr1 75258207 75258336 -121937096 + B1F1 SINE Alu 1 147 -2 5 1159 321 26 0 0 chr1 75259093 75259131 -121936301 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1159 785 267 157 4 chr1 75259153 75259401 -121936031 - B4A SINE B4 -6 286 1 5 1159 214 250 16 16 chr1 75260421 75260482 -121934950 + (CACCT)n Simple_repeat Simple_repeat 3 63 0 5 1159 30 59 0 0 chr1 75260647 75260698 -121934734 + GC_rich Low_complexity Low_complexity 1 51 0 5 1159 599 306 2 7 chr1 75261434 75261664 -121933768 - L1MA4 LINE L1 -8 6292 6067 5 1159 386 342 17 8 chr1 75261956 75262074 -121933358 + RSINE1 SINE B4 2 120 -45 5 1159 279 0 0 0 chr1 75262074 75262105 -121933327 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1159 198 0 0 0 chr1 75262105 75262126 -121933306 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1159 229 239 28 0 chr1 75262253 75262324 -121933108 - L1MC5 LINE L1 -202 7759 7687 5 1159 288 0 0 0 chr1 75262481 75262513 -121932919 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1159 780 169 7 0 chr1 75262513 75262647 -121932785 - B1_Mus1 SINE Alu -12 136 2 5 1159 207 100 0 0 chr1 75263070 75263100 -121932332 + (TCG)n Simple_repeat Simple_repeat 2 31 0 5 1159 291 257 0 0 chr1 75263132 75263202 -121932230 - ID4 SINE ID -11 72 3 5 1159 405 0 0 0 chr1 75263258 75263303 -121932129 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1159 1117 75 0 0 chr1 75263303 75263449 -121931983 - B1_Mm SINE Alu -1 146 1 5 1159 809 55 18 0 chr1 75263504 75263614 -121931818 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 5 1159 649 341 46 37 chr1 75263626 75264162 -121931270 - L1MC4 LINE L1 -866 7095 6642 6 1159 191 176 0 38 chr1 75264178 75264231 -121931201 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 6 1159 810 225 110 0 chr1 75264427 75264618 -121930814 + B3 SINE B2 1 212 -4 6 1159 598 205 66 0 chr1 75264633 75264755 -121930677 - B1_Mur1 SINE Alu -8 141 12 6 1159 1045 184 36 0 chr1 75265620 75265816 -121929616 - RLTR26 LTR ERVK -439 203 1 6 1159 1134 62 0 0 chr1 75265834 75265979 -121929453 + B1_Mus1 SINE Alu 4 148 0 6 1159 532 264 65 98 chr1 75266093 75266307 -121929125 - MLT1C LTR MaLR -256 211 5 6 1159 540 0 0 0 chr1 75266528 75266588 -121928844 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 6 1159 543 281 29 7 chr1 75266635 75266775 -121928657 + B3 SINE B2 47 189 -27 6 1159 182 306 32 0 chr1 75267234 75267296 -121928136 + L2a LINE L2 3341 3404 -22 6 1159 882 157 7 0 chr1 75267401 75267541 -121927891 + B1_Mus1 SINE Alu 2 142 -6 6 1159 3409 18 0 2 chr1 75268032 75268429 -121927003 + MTA_Mm LTR MaLR 1 396 0 6 1159 180 0 0 0 chr1 75269526 75269546 -121925886 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1159 275 187 127 51 chr1 75269553 75269632 -121925800 - PB1D10 SINE Alu 0 117 33 6 1159 278 331 65 16 chr1 75269651 75269774 -121925658 + L2 LINE L2 2788 2916 -503 6 1159 313 347 85 20 chr1 75271258 75271411 -121924021 - RSINE1 SINE B4 0 165 3 6 1159 537 303 66 44 chr1 75271411 75271635 -121923797 - B4A SINE B4 -62 230 2 6 1159 248 268 27 40 chr1 75271635 75271705 -121923727 - MER5A1 DNA MER1_type -89 77 9 6 1159 673 219 7 20 chr1 75272455 75272604 -121922828 - B1_Mus2 SINE Alu 0 147 1 6 1159 1145 68 0 0 chr1 75272846 75272993 -121922439 + B1_Mus1 SINE Alu 2 148 0 6 1159 243 146 0 0 chr1 75272993 75273034 -121922398 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1159 596 271 7 7 chr1 75273211 75273352 -121922080 - RSINE1 SINE B4 -23 142 2 6 1159 363 202 106 0 chr1 75273352 75273444 -121921988 - MER2 DNA MER2_type -121 224 123 6 1159 199 29 0 79 chr1 75273679 75273717 -121921715 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1159 399 348 57 90 chr1 75275550 75276093 -121919339 - L1MEb LINE L1 -5472 598 74 6 1159 664 32 32 11 chr1 75276330 75276424 -121919008 + (TTTTC)n Simple_repeat Simple_repeat 4 99 0 6 1159 421 235 39 0 chr1 75276436 75276538 -121918894 - B1_Mus2 SINE Alu 0 147 42 6 1159 247 122 49 0 chr1 75276615 75276656 -121918776 - B1_Mus1 SINE Alu -93 55 13 6 1159 300 237 0 0 chr1 75276810 75276869 -121918563 + RSINE1 SINE B4 74 132 -33 6 1159 1279 78 16 16 chr1 75276926 75277109 -121918323 - B2_Mm2 SINE B2 -9 186 4 6 1159 808 179 0 0 chr1 75277116 75277250 -121918182 + B1_Mus2 SINE Alu 12 145 -2 6 1159 1796 58 0 0 chr1 75277250 75277476 -121917956 + Lx3B LINE L1 6209 6434 -539 6 1159 2588 86 0 0 chr1 75277483 75277810 -121917622 + ORR1A2 LTR MaLR 1 327 0 6 1159 2522 196 53 45 chr1 75277811 75278026 -121917406 + RMER19C LTR ERVK 24 243 -368 6 1159 2685 92 139 111 chr1 75278026 75278529 -121916903 + MURVY-LTR LTR ERV1 1 517 -2 6 1159 2522 196 53 45 chr1 75278529 75278896 -121916536 + RMER19C LTR ERVK 244 610 -1 6 1159 360 0 0 0 chr1 75279097 75279137 -121916295 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1159 207 257 115 66 chr1 75279969 75280152 -121915280 + L2 LINE L2 2669 2860 -559 6 1159 934 255 24 5 chr1 75280258 75280463 -121914969 + B3 SINE B2 8 216 0 6 1159 229 178 44 0 chr1 75280562 75280607 -121914825 + T-rich Low_complexity Low_complexity 1 47 0 6 1159 24 32 0 0 chr1 75280607 75280638 -121914794 + AT_rich Low_complexity Low_complexity 1 31 0 6 1159 805 132 102 7 chr1 75280639 75280776 -121914656 - B1_Mur4 SINE Alu 0 150 1 6 1159 699 242 0 13 chr1 75280779 75280930 -121914502 - B1_Mur1 SINE Alu 0 149 1 6 1159 759 235 108 25 chr1 75280930 75281170 -121914262 + ORR1E LTR MaLR 64 323 -36 6 1159 281 300 127 0 chr1 75281203 75281313 -121914119 + ID_B1 SINE B4 1 124 -100 6 1159 576 283 123 66 chr1 75281428 75281988 -121913444 + L1MD LINE L1 2340 2935 -3211 6 1159 673 287 88 8 chr1 75282527 75282776 -121912656 - B4A SINE B4 -20 272 4 6 1159 294 161 18 0 chr1 75282783 75282839 -121912593 - L1MD LINE L1 -2572 3574 3518 6 1159 1303 95 32 5 chr1 75282917 75283107 -121912325 - B2_Mm2 SINE B2 0 195 1 6 1159 468 0 0 0 chr1 75283708 75283760 -121911672 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1159 363 44 0 0 chr1 75283760 75283804 -121911628 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1159 591 321 58 22 chr1 75283804 75284027 -121911405 - B4A SINE B4 -38 254 24 6 1159 1157 48 0 40 chr1 75284278 75284421 -121911011 + B1_Mus2 SINE Alu 2 138 -9 6 1159 203 61 30 0 chr1 75284421 75284454 -121910978 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 6 1159 491 198 35 18 chr1 75285552 75285665 -121909767 + PB1D10 SINE Alu 1 115 -2 6 1159 1082 197 0 15 chr1 75285687 75285888 -121909544 - B3 SINE B2 -2 214 17 6 1159 208 213 0 32 chr1 75286493 75286556 -121908876 + A-rich Low_complexity Low_complexity 2 62 0 6 1159 297 0 0 0 chr1 75286994 75287027 -121908405 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1159 616 248 130 60 chr1 75287028 75287243 -121908189 - MER2 DNA MER2_type -34 311 82 6 1159 860 137 43 14 chr1 75288365 75288506 -121906926 + B1_Mur2 SINE Alu 3 147 -2 6 1159 288 0 0 0 chr1 75288510 75288542 -121906890 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1159 450 264 19 0 chr1 75288932 75289038 -121906394 - PB1D7 SINE Alu -12 108 1 6 1159 363 44 0 0 chr1 75289164 75289209 -121906223 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1159 750 143 55 35 chr1 75291363 75291508 -121903924 - B1_Mur3 SINE Alu 0 149 2 6 1159 1536 57 10 5 chr1 75291521 75291715 -121903717 - B2_Mm2 SINE B2 0 195 1 6 1159 1188 49 0 14 chr1 75291925 75292071 -121903361 + B1_Mus2 SINE Alu 2 145 -2 6 1159 749 234 0 0 chr1 75292104 75292245 -121903187 + B1_Mus2 SINE Alu 5 145 -2 6 1159 225 0 0 0 chr1 75292254 75292279 -121903153 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 1159 850 202 11 43 chr1 75292655 75292841 -121902591 - B3 SINE B2 -32 184 5 6 1159 228 333 42 77 chr1 75293106 75293249 -121902183 - RLTR23 LTR ERV1 -39 391 254 6 1159 954 50 0 0 chr1 75293170 75293289 -121902143 + B1_Mm SINE Alu 29 147 0 6 1159 402 250 57 57 chr1 75293308 75293414 -121902018 + RSINE1 SINE B4 60 165 0 6 1159 1223 270 190 14 chr1 75293842 75294331 -121901101 - RMER15 LTR ERVL 0 575 1 6 1159 239 258 32 0 chr1 75294655 75294717 -121900715 + L2a LINE L2 3355 3418 -8 6 1159 181 402 78 10 chr1 75294725 75294828 -121900604 + L2 LINE L2 2750 2859 -560 6 1159 1421 75 37 0 chr1 75294832 75295019 -121900413 + B2_Mm2 SINE B2 2 195 0 6 1159 1418 180 129 31 chr1 75295086 75295436 -121899996 + ORR1C2 LTR MaLR 1 384 0 6 1159 1496 217 78 20 chr1 75295958 75296306 -121899126 - ORR1D2 LTR MaLR 0 370 3 6 1159 713 304 153 7 chr1 75296729 75297004 -121898428 - MTE2b LTR MaLR -62 317 3 6 1159 4702 120 54 8 chr1 75297076 75297781 -121897651 + RMER19A LTR ERVK 1 737 0 6 1159 303 148 12 36 chr1 75297909 75297993 -121897439 - Lx6 LINE L1 -26 7434 7353 6 1159 294 182 176 29 chr1 75298018 75298086 -121897346 - B1F2 SINE Alu -67 82 5 6 1159 217 269 0 37 chr1 75298038 75298092 -121897340 - B4 SINE B4 -157 135 84 6 1159 247 233 130 52 chr1 75298108 75298185 -121897247 - ID4_ SINE ID 0 83 1 6 1159 255 289 0 129 chr1 75298536 75298572 -121896860 + MT2B LTR ERVL 136 153 -448 6 1159 743 197 0 0 chr1 75298572 75298694 -121896738 + B1_Mur3 SINE Alu 1 122 -27 6 1159 432 55 0 0 chr1 75298696 75298751 -121896681 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 1159 195 42 0 0 chr1 75298821 75298845 -121896587 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1159 693 0 0 0 chr1 75298907 75298984 -121896448 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 6 1159 502 288 71 7 chr1 75298993 75299133 -121896299 + RSINE1 SINE B4 3 151 -14 6 1159 315 0 0 0 chr1 75299174 75299209 -121896223 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1159 623 281 160 24 chr1 75299268 75299687 -121895745 - L1M5 LINE L1 -1524 4622 4147 6 1159 311 192 0 0 chr1 75299754 75299806 -121895626 - LTR16C LTR ERVL -3 486 435 6 1159 230 315 26 53 chr1 75299922 75300036 -121895396 - LTR16C LTR ERVL -223 266 156 6 1159 670 255 87 0 chr1 75300075 75300224 -121895208 + B3 SINE B2 4 165 -51 6 1159 303 28 0 0 chr1 75300224 75300260 -121895172 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1159 183 205 0 0 chr1 75300260 75300299 -121895133 + GA-rich Low_complexity Low_complexity 1 39 0 6 1159 247 345 12 0 chr1 75300309 75300393 -121895039 - LTR16C LTR ERVL -363 126 42 6 1159 281 252 179 11 chr1 75301167 75301356 -121894076 + L1MD LINE L1 3503 3760 -2386 6 1159 224 267 27 32 chr1 75301368 75301471 -121893961 + B1F2 SINE Alu 48 149 0 6 1159 674 251 95 66 chr1 75301466 75301733 -121893699 + B4A SINE B4 10 286 -6 6 1159 333 0 0 0 chr1 75301733 75301770 -121893662 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1159 297 0 0 0 chr1 75301770 75301802 -121893630 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1159 225 196 18 89 chr1 75301821 75301877 -121893555 + ID2 SINE ID 2 53 -30 7 1159 310 262 60 0 chr1 75302031 75302115 -121893317 - B4A SINE B4 -202 90 2 7 1159 292 325 35 24 chr1 75302384 75302469 -121892963 + PB1D10 SINE Alu 23 108 -9 7 1159 215 205 0 0 chr1 75302579 75302618 -121892814 + PB1D7 SINE Alu 81 119 -1 7 1159 630 268 66 33 chr1 75303207 75303494 -121891938 + ORR1E LTR MaLR 5 368 -2 7 1159 364 206 73 73 chr1 75304204 75304314 -121891118 - PB1D10 SINE Alu -1 116 7 7 1159 305 224 75 84 chr1 75304224 75304331 -121891101 - ID_B1 SINE B4 -52 172 67 7 1159 1066 159 18 42 chr1 75304525 75304742 -121890690 - B3 SINE B2 -4 212 1 7 1159 847 195 129 16 chr1 75304788 75304981 -121890451 + B3 SINE B2 2 216 0 7 1159 818 209 151 5 chr1 75306242 75306434 -121888998 + ID_B1 SINE B4 2 221 -3 7 1159 2187 135 70 16 chr1 75306539 75306922 -121888510 + MTB_Mm LTR MaLR 1 404 -3 7 1159 3489 114 92 35 chr1 75306925 75307559 -121887873 + MTB_Mm-int LTR MaLR 23 692 -566 7 1159 288 299 107 31 chr1 75308088 75308247 -121887185 - MIRb SINE MIR -78 190 20 7 1159 246 210 113 0 chr1 75308659 75308721 -121886711 - MER117 DNA MER1_type -30 167 99 7 1159 438 247 137 74 chr1 75309408 75309583 -121885849 + MLT1J1 LTR MaLR 55 240 -204 7 1159 937 98 49 0 chr1 75311231 75311374 -121884058 + B1_Mur4 SINE Alu 1 150 0 7 1159 624 236 35 0 chr1 75314979 75315123 -121880309 - B1F SINE Alu 0 149 1 7 1159 985 285 57 57 chr1 75315910 75316293 -121879139 - MER63B DNA AcHobo -48 388 6 7 1159 248 73 0 47 chr1 75316339 75316382 -121879050 + B2_Mm2 SINE B2 1 41 -154 7 1159 355 212 36 36 chr1 75316560 75316643 -121878789 + RSINE1 SINE B4 66 148 -17 7 1159 1218 93 0 0 chr1 75316648 75316859 -121878573 + (CA)n Simple_repeat Simple_repeat 1 211 0 7 1159 269 194 15 214 chr1 75317367 75317382 -121878050 - PB1 SINE Alu -1 126 118 7 1159 333 0 0 0 chr1 75317382 75317419 -121878013 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1159 475 261 17 0 chr1 75317419 75317534 -121877898 - B1F SINE Alu -11 138 22 7 1159 2022 119 32 0 chr1 75317644 75317955 -121877477 + ORR1A4 LTR MaLR 1 321 -8 7 1159 341 288 0 0 chr1 75317997 75318077 -121877355 - ID4_ SINE ID -1 82 3 7 1159 471 296 24 0 chr1 75318094 75318219 -121877213 - B1F1 SINE Alu -10 139 12 7 1159 2015 144 150 41 chr1 75318222 75318636 -121876796 - RMER6B LTR ERVK -2 459 1 7 1159 7182 82 18 20 chr1 75318636 75319635 -121875797 - MYSERV6-int LTR ERVK 0 8959 7963 7 1159 335 21 0 41 chr1 75319649 75319698 -121875734 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 7 1159 1120 82 0 20 chr1 75319698 75319847 -121875585 - B1_Mm SINE Alu 0 147 2 7 1159 2986 89 16 2 chr1 75319848 75320064 -121875368 - MYSERV6-int LTR ERVK -982 7977 7772 7 1159 1450 53 0 79 chr1 75320064 75320204 -121875228 - B2_Mm1a SINE B2 -5 188 63 7 1159 1712 26 0 0 chr1 75320204 75320397 -121875035 + B2_Mm1a SINE B2 1 193 0 7 1159 1450 53 0 79 chr1 75320397 75320459 -121874973 - B2_Mm1a SINE B2 -131 62 2 7 1159 2986 168 35 29 chr1 75320459 75320980 -121874452 - MYSERV6-int LTR ERVK -1145 7814 7288 7 1159 2296 98 41 8 chr1 75320975 75321337 -121874095 - MYSERV6-int LTR ERVK -2223 6736 6363 7 1159 344 159 0 73 chr1 75321337 75321405 -121874027 - PB1D7 SINE Alu -49 71 9 7 1159 256 220 50 17 chr1 75321356 75321416 -121874016 - B4A SINE B4 -150 142 81 7 1159 4754 128 27 100 chr1 75321419 75322331 -121873101 - MYSERV6-int LTR ERVK -8113 846 1 7 1159 1683 137 265 40 chr1 75322331 75322705 -121872727 - RMER6B LTR ERVK 0 461 4 7 1159 459 283 87 61 chr1 75323071 75323088 -121872344 - B4 SINE B4 -44 248 189 7 1159 992 98 7 0 chr1 75323088 75323231 -121872201 - B1_Mur4 SINE Alu 0 150 7 7 1159 459 283 87 61 chr1 75323231 75323267 -121872165 - B4 SINE B4 -44 188 48 7 1159 545 0 15 0 chr1 75323526 75323591 -121871841 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1159 1171 58 0 0 chr1 75323941 75324080 -121871352 + B1_Mus1 SINE Alu 2 140 -8 7 1159 282 29 0 0 chr1 75324080 75324115 -121871317 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 1159 634 162 259 0 chr1 75324152 75324308 -121871124 - B3 SINE B2 -10 206 28 7 1159 6259 136 44 25 chr1 75324933 75325832 -121869600 + RLTR25A LTR ERVK 1 912 -191 7 1159 405 0 0 0 chr1 75325832 75325877 -121869555 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1159 6259 136 44 25 chr1 75325877 75326059 -121869373 + RLTR25A LTR ERVK 913 1103 0 7 1159 218 304 0 48 chr1 75326169 75326252 -121869180 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 7 1159 822 67 0 63 chr1 75326284 75326411 -121869021 + ORR1B1 LTR MaLR 249 367 0 7 1159 4441 200 156 73 chr1 75326419 75326802 -121868630 + ORR1B1-int LTR MaLR 5 338 -1171 7 1159 2634 81 0 0 chr1 75326802 75327134 -121868298 + IAPEY3_LTR LTR ERVK 1 332 0 7 1159 4441 200 156 73 chr1 75327134 75327237 -121868195 + ORR1B1-int LTR MaLR 339 485 -1024 7 1159 1166 124 32 0 chr1 75327237 75327263 -121868169 - B2_Mm1a SINE B2 -1 192 162 7 1159 198 0 0 0 chr1 75327263 75327285 -121868147 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 1159 1166 124 32 0 chr1 75327285 75327443 -121867989 - B2_Mm1a SINE B2 -32 161 3 7 1159 772 201 65 0 chr1 75327446 75327585 -121867847 - B1_Mus1 SINE Alu 0 148 1 7 1159 4441 200 156 73 chr1 75327585 75328483 -121866949 + ORR1B1-int LTR MaLR 486 1509 0 7 1159 1954 173 65 5 chr1 75328483 75328855 -121866577 + ORR1B1 LTR MaLR 1 394 0 7 1159 438 191 114 0 chr1 75328875 75328980 -121866452 + RSINE1 SINE B4 4 120 -45 7 1159 933 159 28 0 chr1 75328980 75329125 -121866307 + B1_Mur2 SINE Alu 1 149 0 7 1159 1137 116 61 0 chr1 75329127 75329308 -121866124 + B2_Mm1t SINE B2 1 192 -1 7 1159 1187 61 0 13 chr1 75329384 75329533 -121865899 + B1_Mus1 SINE Alu 1 147 -1 7 1159 392 272 117 0 chr1 75329543 75329646 -121865786 + PB1 SINE Alu 13 127 0 7 1159 222 233 0 0 chr1 75329694 75329737 -121865695 + ID4_ SINE ID 3 45 -38 7 1159 308 83 0 20 chr1 75329745 75329794 -121865638 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 7 1159 732 236 25 0 chr1 75329794 75329951 -121865481 + RSINE1 SINE B4 5 165 0 7 1159 999 217 29 5 chr1 75330009 75330217 -121865215 + B3 SINE B2 4 216 0 7 1159 447 321 120 28 chr1 75330218 75330421 -121865011 + L2 LINE L2 1796 2008 -1411 7 1159 198 67 67 0 chr1 75330421 75330466 -121864966 + (CAA)n Simple_repeat Simple_repeat 2 49 0 7 1159 447 321 120 28 chr1 75330466 75330621 -121864811 + L2 LINE L2 2009 2186 -1233 7 1159 274 128 0 0 chr1 75330625 75330664 -121864768 + ORR1B2 LTR MaLR 1 39 -328 7 1159 293 79 0 0 chr1 75330676 75330714 -121864718 + ORR1B2 LTR MaLR 1 38 -329 7 1159 1543 200 111 14 chr1 75330727 75331077 -121864355 + ORR1C2 LTR MaLR 1 384 0 7 1159 1173 101 12 0 chr1 75331112 75331280 -121864152 + B2_Mm1t SINE B2 10 179 -14 7 1159 293 87 381 19 chr1 75331327 75331432 -121864000 + B2_Mm2 SINE B2 47 189 -6 7 1159 315 0 0 0 chr1 75331444 75331479 -121863953 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1159 400 303 47 35 chr1 75331480 75331651 -121863781 + L2 LINE L2 2266 2438 -981 7 1159 1124 148 279 23 chr1 75331768 75332101 -121863331 - MTC LTR MaLR 0 421 4 7 1159 1147 207 10 5 chr1 75332308 75332517 -121862915 + B3 SINE B2 1 210 -6 7 1159 685 207 74 0 chr1 75332616 75332751 -121862681 + ID_B1 SINE B4 80 224 0 7 1159 270 281 167 30 chr1 75332793 75332925 -121862507 + RMER15 LTR ERVL 408 557 -18 7 1159 194 321 71 29 chr1 75332932 75333102 -121862330 + L2 LINE L2 2506 2682 -737 7 1159 501 319 78 0 chr1 75333234 75333425 -121862007 + B3 SINE B2 4 209 -7 7 1159 198 328 23 83 chr1 75333879 75334012 -121861420 + MIRb SINE MIR 112 236 -32 7 1159 182 174 22 0 chr1 75334096 75334142 -121861290 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1159 27 0 0 0 chr1 75334177 75334204 -121861228 + AT_rich Low_complexity Low_complexity 1 27 0 7 1159 432 0 0 0 chr1 75334802 75334850 -121860582 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1159 313 364 38 49 chr1 75334966 75335151 -121860281 - MER5A DNA MER1_type -6 183 1 7 1159 359 283 84 48 chr1 75336766 75336933 -121858499 + MER33 DNA MER1_type 138 310 -14 7 1159 1159 82 133 12 chr1 75336942 75337115 -121858317 - B2_Mm2 SINE B2 -1 194 1 7 1159 310 231 264 0 chr1 75337508 75337599 -121857833 + PB1D10 SINE Alu 1 115 -2 7 1159 612 207 17 8 chr1 75337613 75337730 -121857702 + PB1D9 SINE Alu 1 118 -2 7 1159 189 107 0 0 chr1 75337731 75337759 -121857673 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1159 1643 150 51 75 chr1 75337892 75338303 -121857129 + RMER17C LTR ERVK 10 410 0 7 1159 241 279 14 29 chr1 75338555 75338625 -121856807 + L2a LINE L2 3358 3426 0 7 1159 2783 150 40 77 chr1 75338819 75339368 -121856064 + RLTR24 LTR ERV1 1 529 0 7 1159 243 0 0 0 chr1 75339852 75339879 -121855553 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1159 192 152 0 0 chr1 75339974 75340007 -121855425 + (TAAG)n Simple_repeat Simple_repeat 2 34 0 7 1159 279 280 0 51 chr1 75340122 75340220 -121855212 + Kanga11a DNA Tc2 873 965 -5 7 1159 205 303 67 0 chr1 75340529 75340618 -121854814 - MIR SINE MIR -90 118 24 7 1159 211 400 0 20 chr1 75342194 75342296 -121853136 + MIRb SINE MIR 87 186 -82 7 1159 220 377 9 19 chr1 75342362 75342470 -121852962 + MIRc SINE MIR 2 108 -160 7 1159 280 246 77 0 chr1 75342590 75342655 -121852777 - tRNA-Ala-GCY_ tRNA tRNA -5 70 1 7 1159 2000 185 40 5 chr1 75342657 75343053 -121852379 + RMER17C LTR ERVK 1 410 0 7 1159 283 206 66 40 chr1 75343062 75343138 -121852294 - B1F SINE Alu -23 126 49 7 1159 298 217 28 28 chr1 75343071 75343142 -121852290 - ID_B1 SINE B4 -28 196 126 7 1159 192 77 0 0 chr1 75343178 75343204 -121852228 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 7 1159 991 155 0 7 chr1 75343207 75343356 -121852076 - B1_Mus1 SINE Alu 0 148 1 7 1159 24 32 0 0 chr1 75343363 75343394 -121852038 + AT_rich Low_complexity Low_complexity 1 31 0 7 1159 493 327 24 30 chr1 75343395 75343559 -121851873 - RSINE1 SINE B4 0 165 3 7 1159 212 292 47 62 chr1 75344077 75344205 -121851227 + L3b LINE CR1 12 137 -345 7 1159 690 239 39 0 chr1 75344366 75344496 -121850936 + B1_Mur1 SINE Alu 2 136 -13 7 1159 618 265 37 0 chr1 75345013 75345149 -121850283 + RSINE1 SINE B4 3 143 -22 7 1159 280 295 100 25 chr1 75345024 75345184 -121850248 + B2_Mm2 SINE B2 13 184 -11 7 1159 794 137 8 15 chr1 75345204 75345337 -121850095 + B1_Mur4 SINE Alu 14 145 -5 7 1159 240 252 13 0 chr1 75345339 75345401 -121850031 - PB1D10 SINE Alu -48 69 5 8 1159 207 0 0 0 chr1 75345700 75345723 -121849709 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1159 807 192 14 0 chr1 75346638 75346784 -121848648 + ID_B1 SINE B4 77 224 0 8 1159 448 265 92 35 chr1 75346783 75346912 -121848520 + RSINE1 SINE B4 12 148 -17 8 1159 387 0 0 0 chr1 75346912 75346955 -121848477 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1159 448 265 92 35 chr1 75346955 75346966 -121848466 + RSINE1 SINE B4 149 159 -6 8 1159 780 236 87 11 chr1 75346967 75347151 -121848281 + B3 SINE B2 6 203 -13 8 1159 259 268 28 0 chr1 75347258 75347329 -121848103 - B4 SINE B4 -4 288 216 8 1159 839 220 11 48 chr1 75347354 75347540 -121847892 - B4 SINE B4 -69 223 45 8 1159 247 323 42 0 chr1 75347697 75347793 -121847639 + L1MC LINE L1 5703 5802 -2080 8 1159 425 286 88 3 chr1 75347848 75348016 -121847416 + L1M2 LINE L1 3512 3689 -2454 8 1159 745 106 13 13 chr1 75348019 75348172 -121847260 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 8 1159 1100 271 134 30 chr1 75348409 75349072 -121846360 + L1MB2 LINE L1 4455 5186 -960 8 1159 494 183 164 0 chr1 75349073 75349177 -121846255 + B1_Mur2 SINE Alu 1 121 -28 8 1159 2608 142 31 12 chr1 75349180 75349593 -121845839 + MTC LTR MaLR 1 421 0 8 1159 432 296 11 40 chr1 75349593 75349769 -121845663 + L1MB2 LINE L1 5342 5512 -671 8 1159 508 134 186 0 chr1 75349792 75349889 -121845543 - B1_Mur4 SINE Alu -10 140 26 8 1159 270 246 108 36 chr1 75350003 75350103 -121845329 - Lx8 LINE L1 -34 7439 7328 8 1159 225 0 0 0 chr1 75350103 75350128 -121845304 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 8 1159 270 246 108 36 chr1 75350128 75350166 -121845266 - Lx8 LINE L1 -146 7327 7292 8 1159 490 159 11 0 chr1 75350263 75350351 -121845081 + RMER21B LTR ERV1 347 435 -407 8 1159 2821 241 58 29 chr1 75350592 75351071 -121844361 - Lx8 LINE L1 -190 7283 6786 8 1159 960 138 37 47 chr1 75351071 75351261 -121844171 + B2_Mm2 SINE B2 3 190 -5 8 1159 2821 241 58 29 chr1 75351261 75351500 -121843932 - Lx8 LINE L1 -688 6785 6544 8 1159 890 238 33 22 chr1 75351493 75351764 -121843668 + L1MB2 LINE L1 5705 5978 -193 8 1159 560 271 7 0 chr1 75351767 75351901 -121843531 + MER57F LTR ERV1 28 162 -274 8 1159 262 294 31 155 chr1 75351901 75352030 -121843402 + PB1D10 SINE Alu 4 116 -1 8 1159 635 311 66 31 chr1 75352061 75352320 -121843112 + MER57F LTR ERV1 147 414 -22 8 1159 634 268 147 0 chr1 75352312 75352502 -121842930 - ID_B1 SINE B4 0 224 7 8 1159 549 176 0 0 chr1 75352529 75352620 -121842812 + B3 SINE B2 1 91 -125 8 1159 373 255 149 41 chr1 75352772 75352993 -121842439 + RMER20B LTR ERVK 123 367 -260 8 1159 363 229 35 163 chr1 75353064 75353205 -121842227 + B3 SINE B2 87 209 -7 8 1159 839 161 80 0 chr1 75353278 75353415 -121842017 - B1_Mur3 SINE Alu -1 148 1 8 1159 366 247 165 0 chr1 75353591 75353676 -121841756 + PB1D10 SINE Alu 1 99 -21 8 1159 2379 135 33 10 chr1 75354997 75355386 -121840046 + RMER10B LTR ERVL 1 398 0 8 1159 543 268 35 0 chr1 75358136 75358278 -121837154 + B1F1 SINE Alu 3 149 0 8 1159 280 235 11 96 chr1 75358388 75358482 -121836950 - L2c LINE L2 -13 3374 3289 8 1159 270 56 0 0 chr1 75360452 75360488 -121834944 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1159 772 164 13 20 chr1 75360794 75360943 -121834489 + B1_Mur4 SINE Alu 3 150 0 8 1159 321 47 0 0 chr1 75360953 75360996 -121834436 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1159 305 282 104 8 chr1 75361006 75361131 -121834301 + L1ME2 LINE L1 6021 6157 -7 8 1159 864 256 18 14 chr1 75361236 75361458 -121833974 - ID_B1 SINE B4 -1 223 1 8 1159 195 297 109 66 chr1 75362723 75362860 -121832572 - MIR SINE MIR -12 250 108 8 1159 311 314 0 19 chr1 75364626 75364730 -121830702 - ID_B1 SINE B4 -4 220 119 8 1159 353 292 34 34 chr1 75364906 75365023 -121830409 + PB1D10 SINE Alu 1 117 0 8 1159 842 111 0 15 chr1 75365179 75365316 -121830116 - URR1B DNA MER1_type 0 225 91 8 1159 296 24 0 24 chr1 75365326 75365368 -121830064 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1159 1222 55 0 0 chr1 75365382 75365528 -121829904 + B1_Mus1 SINE Alu 3 148 0 8 1160 315 322 24 65 chr1 75367228 75367351 -121828081 + L2a LINE L2 3305 3422 -4 8 1160 941 243 24 9 chr1 75367494 75367706 -121827726 + B3 SINE B2 2 216 0 8 1160 22 70 0 0 chr1 75367706 75367749 -121827683 + AT_rich Low_complexity Low_complexity 1 43 0 8 1160 256 238 43 87 chr1 75367775 75367867 -121827565 + PB1D10 SINE Alu 29 116 -1 8 1160 26 50 0 0 chr1 75368303 75368343 -121827089 + AT_rich Low_complexity Low_complexity 1 40 0 8 1160 304 365 88 5 chr1 75368343 75368558 -121826874 + L2a LINE L2 2797 3029 -390 8 1160 409 253 95 0 chr1 75368692 75368787 -121826645 - PB1D10 SINE Alu -7 110 7 8 1160 1523 72 0 15 chr1 75368819 75369017 -121826415 - B2_Mm2 SINE B2 0 195 1 8 1160 372 360 65 19 chr1 75369017 75369272 -121826160 + L2a LINE L2 3159 3426 0 8 1160 355 253 13 0 chr1 75369278 75369357 -121826075 - MIRc SINE MIR -106 162 83 8 1160 306 0 0 0 chr1 75369468 75369502 -121825930 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1160 387 0 0 0 chr1 75369502 75369544 -121825888 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1160 837 295 67 15 chr1 75369578 75369846 -121825586 - B4A SINE B4 -8 284 3 8 1160 500 319 16 22 chr1 75369975 75370158 -121825274 + L1MC3 LINE L1 5967 6148 -1637 8 1160 513 47 0 0 chr1 75370265 75370329 -121825103 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1160 423 0 0 0 chr1 75370489 75370536 -121824896 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1160 314 272 149 19 chr1 75370600 75370761 -121824671 - L1MD2 LINE L1 -43 6316 6135 8 1160 525 104 0 0 chr1 75370768 75370845 -121824587 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1160 504 0 0 0 chr1 75372973 75373029 -121822403 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1160 1207 41 132 17 chr1 75373487 75373661 -121821771 - B2_Mm2 SINE B2 0 195 2 8 1160 183 323 15 0 chr1 75374220 75374285 -121821147 - MIR3 SINE MIR -54 154 89 8 1160 208 154 0 25 chr1 75374366 75374406 -121821026 + GA-rich Low_complexity Low_complexity 4 42 0 8 1160 188 282 120 68 chr1 75375303 75375436 -121819996 - MIRc SINE MIR -111 157 18 8 1160 242 292 36 124 chr1 75376249 75376386 -121819046 - L2a LINE L2 -18 3408 3284 8 1160 615 159 154 31 chr1 75377026 75377156 -121818276 + B1_Mur1 SINE Alu 4 149 0 8 1160 184 263 263 0 chr1 75377393 75377469 -121817963 + MIR SINE MIR 5 100 -162 8 1160 359 56 19 0 chr1 75377951 75378005 -121817427 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1160 222 150 24 36 chr1 75378633 75378716 -121816716 + C-rich Low_complexity Low_complexity 5 86 0 8 1160 306 0 0 0 chr1 75380126 75380160 -121815272 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1160 462 18 0 0 chr1 75380295 75380350 -121815082 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1160 212 268 0 44 chr1 75382299 75382389 -121813043 + G-rich Low_complexity Low_complexity 5 90 0 8 1160 315 330 48 53 chr1 75383195 75383422 -121812010 + MIRb SINE MIR 26 251 -17 8 1160 200 436 12 35 chr1 75386355 75386524 -121808908 - MIRb SINE MIR -30 238 74 8 1160 271 301 0 52 chr1 75386613 75386690 -121808742 + ID4 SINE ID 1 73 -10 8 1160 1623 52 0 0 chr1 75387056 75387248 -121808184 - B2_Mm1a SINE B2 0 193 2 8 1160 365 231 467 20 chr1 75387930 75388080 -121807352 + ID_B1 SINE B4 3 219 -5 8 1160 1156 89 0 0 chr1 75388100 75388246 -121807186 + B1_Mus1 SINE Alu 1 146 -2 8 1160 1164 181 46 9 chr1 75388750 75388967 -121806465 - URR1B DNA MER1_type 0 225 1 8 1160 301 268 82 52 chr1 75390007 75390141 -121805291 + MIRb SINE MIR 71 212 -56 8 1160 333 0 0 0 chr1 75392146 75392183 -121803249 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1160 234 0 0 0 chr1 75393226 75393252 -121802180 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1160 893 150 0 0 chr1 75393252 75393385 -121802047 - B1_Mur4 SINE Alu -13 137 5 8 1160 23 54 0 0 chr1 75393605 75393642 -121801790 + AT_rich Low_complexity Low_complexity 1 37 0 8 1160 441 0 0 0 chr1 75393951 75394000 -121801432 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1160 314 266 51 68 chr1 75394020 75394137 -121801295 + PB1 SINE Alu 11 125 -2 8 1160 819 163 82 0 chr1 75394294 75394429 -121801003 + B1_Mus1 SINE Alu 1 146 -2 8 1160 275 274 35 12 chr1 75394784 75394869 -121800563 - MER5A1 DNA MER1_type -65 101 15 8 1160 234 0 0 0 chr1 75398159 75398185 -121797247 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1160 21 0 0 0 chr1 75398579 75398600 -121796832 + AT_rich Low_complexity Low_complexity 1 21 0 8 1160 369 296 25 34 chr1 75399099 75399218 -121796214 - MIR3 SINE MIR -9 199 82 8 1160 425 122 14 0 chr1 75400230 75400304 -121795128 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1160 228 111 0 0 chr1 75400708 75400744 -121794688 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 8 1160 207 243 0 0 chr1 75401162 75401199 -121794233 + (CCG)n Simple_repeat Simple_repeat 1 37 0 8 1160 216 259 35 0 chr1 75401355 75401440 -121793992 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 8 1160 1464 131 9 9 chr1 75401885 75402108 -121793324 - URR1A DNA MER1_type -3 223 1 8 1160 378 316 18 31 chr1 75402211 75402374 -121793058 + MIRb SINE MIR 66 226 -42 8 1160 270 0 0 0 chr1 75404006 75404036 -121791396 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1160 200 280 0 0 chr1 75404060 75404110 -121791322 + MIR SINE MIR 213 262 0 8 1160 365 344 45 19 chr1 75404406 75404563 -121790869 - MIRb SINE MIR -13 255 95 8 1160 825 273 50 0 chr1 75404616 75404814 -121790618 + ID_B1 SINE B4 3 210 -14 8 1160 261 163 0 0 chr1 75404814 75404863 -121790569 + G-rich Low_complexity Low_complexity 5 53 0 8 1160 415 268 146 13 chr1 75405284 75405435 -121789997 + MIRb SINE MIR 20 190 -78 8 1160 1204 68 0 7 chr1 75406110 75406258 -121789174 + B1_Mus2 SINE Alu 1 147 0 8 1160 193 70 0 65 chr1 75406258 75406304 -121789128 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 9 1160 191 329 62 12 chr1 75407468 75407548 -121787884 + MIRc SINE MIR 66 149 -119 9 1160 334 148 122 12 chr1 75408178 75408260 -121787172 + B1F SINE Alu 7 97 -52 9 1160 918 126 22 0 chr1 75408271 75408406 -121787026 - B1_Mur4 SINE Alu -10 140 3 9 1160 1484 69 11 0 chr1 75408547 75408735 -121786697 - B2_Mm1t SINE B2 -3 190 1 9 1160 422 235 92 43 chr1 75408739 75408921 -121786511 - MIRb SINE MIR -69 199 7 9 1160 1175 106 73 0 chr1 75408993 75409172 -121786260 + B2_Mm2 SINE B2 3 194 -1 9 1160 488 287 42 47 chr1 75409378 75409568 -121785864 - Charlie19a DNA Charlie -165 221 33 9 1160 423 0 0 0 chr1 75410369 75410416 -121785016 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1160 282 56 0 0 chr1 75411084 75411120 -121784312 + (GGA)n Simple_repeat Simple_repeat 3 38 0 9 1160 441 0 0 0 chr1 75411165 75411214 -121784218 + (GGTTG)n Simple_repeat Simple_repeat 2 50 0 9 1160 884 149 0 28 chr1 75411214 75411359 -121784073 - B1_Mus1 SINE Alu 0 148 8 9 1160 485 311 129 21 chr1 75412403 75412597 -121782835 + ID_B1 SINE B4 2 216 -8 9 1160 683 221 7 21 chr1 75412685 75412828 -121782604 + B1_Mur3 SINE Alu 3 143 -6 9 1160 314 345 60 12 chr1 75412836 75413003 -121782429 - MIR SINE MIR -14 248 74 9 1160 402 308 56 6 chr1 75413146 75413306 -121782126 - Tigger12c DNA MER2_type -521 213 46 9 1160 405 0 0 0 chr1 75413992 75414037 -121781395 + (TATAA)n Simple_repeat Simple_repeat 1 45 0 9 1160 224 296 0 0 chr1 75414042 75414096 -121781336 - MER91B DNA Tip100 -136 54 1 9 1160 1199 122 31 21 chr1 75415812 75415845 -121779587 - B2_Mm2 SINE B2 -1 194 162 9 1160 213 94 0 0 chr1 75415845 75415877 -121779555 + (CTTA)n Simple_repeat Simple_repeat 1 32 0 9 1160 1199 122 31 21 chr1 75415877 75416035 -121779397 - B2_Mm2 SINE B2 -34 161 1 9 1160 789 163 0 0 chr1 75416049 75416178 -121779254 - B1_Mur4 SINE Alu -21 129 1 9 1160 270 0 0 0 chr1 75416199 75416229 -121779203 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1160 467 226 185 0 chr1 75416241 75416387 -121779045 - B3A SINE B2 -18 180 8 9 1160 244 68 0 43 chr1 75416406 75416452 -121778980 - B1_Mm SINE Alu 0 147 104 9 1160 243 79 0 0 chr1 75416453 75416491 -121778941 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 9 1160 1359 69 23 6 chr1 75416540 75416715 -121778717 - B2_Mm2 SINE B2 -14 181 4 9 1160 293 311 60 15 chr1 75416863 75416997 -121778435 - MIRb SINE MIR -8 260 121 9 1160 196 133 0 32 chr1 75420242 75420304 -121775128 + T-rich Low_complexity Low_complexity 1 60 0 9 1160 268 355 45 32 chr1 75420670 75420827 -121774605 - MIR SINE MIR -49 213 55 9 1160 1611 32 21 0 chr1 75422058 75422247 -121773185 - B2_Mm1a SINE B2 0 193 1 9 1160 195 348 109 0 chr1 75422323 75422461 -121772971 - MIRb SINE MIR -22 246 94 9 1160 22 0 0 0 chr1 75422617 75422639 -121772793 + AT_rich Low_complexity Low_complexity 1 22 0 9 1160 662 114 0 9 chr1 75422639 75422745 -121772687 - B1_Mus2 SINE Alu 0 147 43 9 1160 498 270 0 17 chr1 75422745 75422862 -121772570 - RSINE1 SINE B4 -49 116 2 9 1160 260 250 157 92 chr1 75425159 75425335 -121770097 - MIRc SINE MIR -35 227 34 9 1160 180 0 0 0 chr1 75425342 75425362 -121770070 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9 1160 1245 77 58 12 chr1 75425363 75425535 -121769897 - B2_Mm2 SINE B2 -14 181 2 9 1160 382 312 39 0 chr1 75426334 75426462 -121768970 - MIR SINE MIR -75 187 55 9 1160 363 318 54 0 chr1 75426572 75426701 -121768731 - MIR SINE MIR -111 151 16 9 1160 267 31 0 0 chr1 75428135 75428167 -121767265 + (CAG)n Simple_repeat Simple_repeat 1 32 0 9 1160 294 87 0 0 chr1 75428845 75428891 -121766541 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1160 228 284 114 0 chr1 75431006 75431094 -121764338 - MIRc SINE MIR -169 99 2 9 1160 1245 82 38 16 chr1 75431779 75431964 -121763468 + B2_Mm1t SINE B2 3 191 -2 9 1160 341 249 103 26 chr1 75433917 75434085 -121761347 + MIRb SINE MIR 36 216 -46 9 1160 667 264 88 73 chr1 75434133 75434394 -121761038 + B4 SINE B4 8 272 -20 9 1160 304 338 0 0 chr1 75434451 75434525 -121760907 + ID4_ SINE ID 2 75 -8 9 1160 183 315 72 80 chr1 75434665 75434803 -121760629 - MIR3 SINE MIR -54 154 18 9 1160 333 0 0 0 chr1 75434945 75434982 -121760450 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1160 1235 121 5 16 chr1 75435071 75435264 -121760168 - B2_Mm2 SINE B2 -4 191 1 9 1160 225 65 0 0 chr1 75435741 75435772 -121759660 + (G)n Simple_repeat Simple_repeat 1 31 0 9 1160 233 307 44 33 chr1 75436169 75436260 -121759172 - L2c LINE L2 -158 3229 3138 9 1160 205 328 0 0 chr1 75437410 75437474 -121757958 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1160 225 0 0 0 chr1 75437762 75437787 -121757645 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 9 1160 201 353 9 47 chr1 75439309 75439416 -121756016 - L2b LINE L2 0 3375 3273 9 1160 283 292 8 32 chr1 75444540 75444664 -121750768 + GA-rich Low_complexity Low_complexity 1 121 0 9 1160 183 129 0 0 chr1 75447067 75447098 -121748334 + (CTCG)n Simple_repeat Simple_repeat 4 34 0 9 1160 225 0 0 0 chr1 75448212 75448237 -121747195 + (CTG)n Simple_repeat Simple_repeat 3 27 0 9 1160 405 0 0 0 chr1 75448559 75448604 -121746828 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1160 248 121 35 0 chr1 75450047 75450105 -121745327 + (CAGAGA)n Simple_repeat Simple_repeat 6 65 0 9 1160 504 0 0 0 chr1 75450744 75450800 -121744632 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 1160 271 0 51 0 chr1 75450800 75450838 -121744594 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1160 195 299 11 65 chr1 75450898 75450991 -121744441 - MIRm SINE MIR -34 242 155 9 1160 464 0 0 18 chr1 75452008 75452065 -121743367 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1160 436 315 9 0 chr1 75452065 75452173 -121743259 + MER3 DNA MER1_type 1 109 -100 9 1160 258 307 90 52 chr1 75453244 75453378 -121742054 - Charlie8 DNA MER1_type -2197 231 93 9 1160 420 20 0 0 chr1 75454006 75454055 -121741377 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1160 204 200 0 0 chr1 75454357 75454397 -121741035 + G-rich Low_complexity Low_complexity 1 40 0 9 1160 346 343 14 14 chr1 75454524 75454669 -121740763 + L3b LINE CR1 23 167 -315 9 1160 21 0 0 0 chr1 75455098 75455119 -121740313 + GC_rich Low_complexity Low_complexity 1 21 0 9 1160 513 0 0 0 chr1 75455443 75455500 -121739932 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1160 217 250 43 29 chr1 75456134 75456204 -121739228 + L2a LINE L2 3331 3401 -25 9 1160 253 320 0 0 chr1 75456258 75456336 -121739096 + L2a LINE L2 3339 3416 -10 9 1160 336 235 80 20 chr1 75456363 75456463 -121738969 + MIR SINE MIR 59 164 -98 9 1160 1334 81 35 0 chr1 75456463 75456636 -121738796 + B2_Mm1t SINE B2 1 179 -14 9 1160 344 106 0 22 chr1 75456683 75456749 -121738683 + B2_Mm2 SINE B2 47 109 -107 9 1160 195 42 0 0 chr1 75456764 75456788 -121738644 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9 1160 297 229 106 35 chr1 75456902 75457015 -121738417 - MIRb SINE MIR -48 220 99 9 1160 1426 35 29 0 chr1 75457187 75459302 -121736130 + (CTGTG)n Simple_repeat Simple_repeat 1 2175 0 9 1160 225 293 0 0 chr1 75459542 75459600 -121735832 - MIRb SINE MIR -188 80 23 9 1160 349 262 103 28 chr1 75459652 75459776 -121735656 - PB1 SINE Alu -14 135 15 9 1160 376 319 64 29 chr1 75462054 75462225 -121733207 + MIRb SINE MIR 59 235 -33 9 1160 983 88 14 0 chr1 75462246 75462393 -121733039 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 9 1160 512 233 62 8 chr1 75462933 75463063 -121732369 - B1F1 SINE Alu -7 142 6 9 1160 244 283 181 74 chr1 75463081 75463230 -121732202 + MER5A1 DNA MER1_type 2 166 0 9 1160 343 250 12 0 chr1 75463260 75463340 -121732092 + MIRb SINE MIR 117 197 -71 9 1160 259 284 25 0 chr1 75463652 75463733 -121731699 + MIRb SINE MIR 63 145 -123 9 1160 1117 271 69 4 chr1 75464817 75464910 -121730522 + B4A SINE B4 1 112 -180 9 1160 450 0 0 0 chr1 75464910 75464960 -121730472 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1160 1117 271 69 4 chr1 75464960 75465140 -121730292 + B4A SINE B4 113 291 -1 9 1160 419 240 62 0 chr1 75465440 75465536 -121729896 + PB1D10 SINE Alu 1 102 -15 9 1160 239 299 39 8 chr1 75466658 75466786 -121728646 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 9 1160 186 278 37 0 chr1 75467131 75467185 -121728247 - MIR3 SINE MIR -138 70 15 9 1160 222 37 0 0 chr1 75467338 75467365 -121728067 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 9 1160 188 339 43 71 chr1 75467612 75467752 -121727680 - L2c LINE L2 -310 3077 2942 9 1160 447 68 0 0 chr1 75468087 75468146 -121727286 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1160 686 136 8 0 chr1 75468133 75468251 -121727181 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 9 1160 236 234 0 0 chr1 75468502 75468549 -121726883 + (CCCA)n Simple_repeat Simple_repeat 1 47 0 9 1160 180 0 0 0 chr1 75470817 75470837 -121724595 + (AGGGGG)n Simple_repeat Simple_repeat 1 20 0 9 1160 309 118 0 0 chr1 75470943 75470994 -121724438 + (GGGAGA)n Simple_repeat Simple_repeat 5 55 0 9 1160 190 318 124 11 chr1 75473599 75473688 -121721744 - MIRb SINE MIR -78 190 92 9 1160 212 275 212 0 chr1 75474588 75474668 -121720764 + MIR SINE MIR 48 144 -118 9 1160 182 37 37 0 chr1 75477061 75477088 -121718344 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 1 1160 266 356 121 0 chr1 75477150 75477282 -121718150 + MIR SINE MIR 21 168 -94 1 1160 348 222 74 0 chr1 75477550 75477631 -121717801 + PB1D10 SINE Alu 5 91 -26 1 1160 250 283 5 0 chr1 75477710 75477797 -121717635 + MER91A DNA Tip100 109 196 0 1 1160 328 362 61 71 chr1 75479874 75479954 -121715478 - L2a LINE L2 -8 3418 3342 1 1160 262 305 0 35 chr1 75479954 75480039 -121715393 + ID4 SINE ID 2 83 0 1 1160 328 362 61 71 chr1 75480039 75480255 -121715177 - L2a LINE L2 -85 3341 3125 1 1160 1272 176 14 5 chr1 75480380 75480602 -121714830 - URR1B DNA MER1_type 0 225 2 1 1160 244 333 82 35 chr1 75484938 75485109 -121710323 + MIRb SINE MIR 82 260 -8 1 1160 1279 172 42 0 chr1 75486644 75486859 -121708573 - URR1A DNA MER1_type 0 226 3 1 1160 193 308 178 0 chr1 75486938 75487045 -121708387 - MIRb SINE MIR -69 199 74 1 1160 285 327 153 6 chr1 75488313 75488476 -121706956 - MIR SINE MIR -72 190 4 1 1160 208 321 59 79 chr1 75489786 75489938 -121705494 - MIRb SINE MIR -119 149 1 1 1160 292 364 41 59 chr1 75489938 75490124 -121705308 + L2a LINE L2 3232 3413 -13 1 1160 279 0 0 0 chr1 75490124 75490155 -121705277 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1160 1360 105 5 5 chr1 75491023 75491214 -121704218 + B2_Mm2 SINE B2 1 191 -4 1 1160 710 217 0 0 chr1 75491265 75491394 -121704038 - B1_Mur1 SINE Alu -19 130 2 1 1160 286 329 91 34 chr1 75491272 75491286 -121704146 + YREP_Mm Unknown Unknown 198 242 -1570 1 1160 289 252 16 130 chr1 75491286 75491409 -121704023 - MT2B LTR ERVL -338 263 155 1 1160 286 329 91 34 chr1 75491409 75491448 -121703984 + YREP_Mm Unknown Unknown 243 383 -1429 1 1160 292 336 82 48 chr1 75491495 75491642 -121703790 - MIR SINE MIR -36 226 75 1 1160 778 327 32 32 chr1 75492959 75493275 -121702157 - MER102c DNA MER1_type -15 316 1 1 1160 1378 71 33 0 chr1 75494179 75494361 -121701071 + B2_Mm2 SINE B2 1 188 -7 1 1160 231 367 12 21 chr1 75495971 75496082 -121699350 + MIRm SINE MIR 47 157 -111 1 1160 267 243 89 63 chr1 75496283 75496362 -121699070 + ID4_ SINE ID 3 83 0 1 1160 355 209 0 34 chr1 75497343 75497432 -121698000 + MLT1A1 LTR MaLR 311 396 -12 1 1161 1259 48 0 0 chr1 75497523 75497670 -121697762 + B1_Mus1 SINE Alu 2 148 0 1 1161 384 338 101 29 chr1 75497927 75498134 -121697298 + MIR SINE MIR 17 238 -24 1 1161 2701 77 71 13 chr1 75498868 75499248 -121696184 + Lx LINE L1 6238 6639 -15 1 1161 781 62 0 18 chr1 75499248 75499362 -121696070 + (GAGAA)n Simple_repeat Simple_repeat 4 115 0 1 1161 21 0 0 0 chr1 75499897 75499918 -121695514 + GC_rich Low_complexity Low_complexity 1 21 0 1 1161 266 258 0 0 chr1 75500694 75500756 -121694676 + MIRm SINE MIR 91 152 -124 1 1161 459 0 0 0 chr1 75503452 75503503 -121691929 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1161 290 312 0 11 chr1 75504147 75504241 -121691191 + MIRb SINE MIR 31 123 -145 3 1161 205 292 164 14 chr1 75504479 75504552 -121690880 + MIRb SINE MIR 7 90 -178 4 1161 216 200 0 39 chr1 75504733 75504785 -121690647 + CT-rich Low_complexity Low_complexity 3 52 0 5 1161 637 247 207 0 chr1 75504816 75505043 -121690389 - B4A SINE B4 -16 276 3 6 1161 453 93 0 26 chr1 75505091 75505168 -121690264 + L1_Mus2 LINE L1 6492 6566 0 7 1161 2136 98 58 47 chr1 75505280 75505644 -121689788 - RLTR9A LTR ERVK 0 368 1 8 1161 415 242 43 11 chr1 75507535 75507627 -121687805 - PB1D7 SINE Alu -5 115 21 9 1161 1433 82 0 49 chr1 75508788 75508961 -121686471 + B2_Mm2 SINE B2 2 169 -26 1 1161 207 0 0 0 chr1 75508961 75508984 -121686448 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1161 1102 86 0 0 chr1 75508985 75509125 -121686307 - B1_Mus2 SINE Alu -6 141 2 1 1161 1433 82 0 49 chr1 75509125 75509153 -121686279 + B2_Mm2 SINE B2 170 195 0 1 1161 221 296 0 90 chr1 75509218 75509296 -121686136 - B1_Mus2 SINE Alu -74 73 3 1 1161 392 308 26 52 chr1 75509296 75509384 -121686048 - B4A SINE B4 -208 84 1 1 1161 379 250 98 0 chr1 75509394 75509486 -121685946 - PB1D10 SINE Alu -5 112 12 1 1161 630 317 32 24 chr1 75509534 75509786 -121685646 + MLT1A0 LTR MaLR 89 342 -23 1 1161 576 0 0 0 chr1 75510273 75510337 -121685095 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1161 450 0 0 0 chr1 75510406 75510456 -121684976 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1 1161 265 200 0 35 chr1 75510456 75510503 -121684929 - B1F1 SINE Alu -13 136 90 1 1161 243 0 0 0 chr1 75510534 75510561 -121684871 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1161 952 61 0 30 chr1 75510561 75510696 -121684736 - B1_Mus1 SINE Alu -9 139 9 2 1161 1373 91 21 0 chr1 75511248 75511434 -121683998 + B2_Mm2 SINE B2 1 190 -5 2 1161 669 225 39 19 chr1 75511452 75511606 -121683826 - RSINE1 SINE B4 -3 162 6 2 1161 971 122 13 57 chr1 75512249 75512406 -121683026 - B1_Mur4 SINE Alu 0 150 1 2 1161 1197 149 5 25 chr1 75512491 75512690 -121682742 + B2_Mm2 SINE B2 1 195 0 2 1161 448 290 26 2 chr1 75512704 75512862 -121682570 + B3 SINE B2 27 195 -3 2 1161 438 231 75 28 chr1 75512894 75513001 -121682431 + B1_Mur1 SINE Alu 38 149 0 2 1161 450 0 0 0 chr1 75513163 75513213 -121682219 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1161 952 269 110 54 chr1 75513569 75514016 -121681416 + MLT1D LTR MaLR 29 500 -5 2 1161 288 0 0 0 chr1 75514017 75514049 -121681383 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1161 201 309 82 31 chr1 75514091 75514188 -121681244 + L2a LINE L2 3325 3426 0 3 1161 23 0 0 0 chr1 75514433 75514456 -121680976 + GC_rich Low_complexity Low_complexity 1 23 0 3 1161 354 280 47 31 chr1 75514472 75514601 -121680831 + CT-rich Low_complexity Low_complexity 3 133 0 3 1161 734 120 39 72 chr1 75514604 75514811 -121680621 - RMER17C LTR ERVK -210 200 1 3 1161 318 261 108 11 chr1 75514820 75514913 -121680519 - RSINE1 SINE B4 -33 132 31 3 1161 961 85 14 21 chr1 75514913 75515058 -121680374 - B1_Mur4 SINE Alu -6 144 1 3 1161 859 223 98 5 chr1 75515072 75515266 -121680166 - B3 SINE B2 0 216 5 3 1161 324 241 112 35 chr1 75515276 75515392 -121680040 - PB1 SINE Alu -2 125 1 3 1161 482 46 0 15 chr1 75515457 75515523 -121679909 + (TTCTC)n Simple_repeat Simple_repeat 2 66 0 3 1161 362 318 45 9 chr1 75515546 75515657 -121679775 - PB1D10 SINE Alu 0 117 3 4 1161 226 348 33 11 chr1 75515580 75515670 -121679762 - B4 SINE B4 -125 167 76 4 1161 319 309 132 78 chr1 75515838 75516119 -121679313 - L1M5 LINE L1 -1336 4810 4515 4 1161 1052 213 30 0 chr1 75516910 75517107 -121678325 - B3 SINE B2 -12 204 2 4 1161 657 78 244 0 chr1 75517278 75517393 -121678039 + B1_Mus1 SINE Alu 6 148 0 4 1161 718 188 0 0 chr1 75517568 75517696 -121677736 - B1F2 SINE Alu -1 148 21 4 1161 248 36 88 18 chr1 75518941 75518998 -121676434 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 4 1161 1236 55 0 0 chr1 75518998 75519144 -121676288 - B1_Mus2 SINE Alu 0 147 2 4 1161 322 315 0 14 chr1 75519206 75519280 -121676152 + ID4_ SINE ID 2 74 -9 4 1161 204 259 26 5 chr1 75519308 75519373 -121676059 + MIRc SINE MIR 112 183 -93 4 1161 258 253 107 0 chr1 75519677 75519752 -121675680 + L1MD2 LINE L1 6052 6134 -225 5 1161 454 154 76 9 chr1 75519757 75519862 -121675570 + L1MC4a LINE L1 7722 7833 -49 5 1161 596 200 38 0 chr1 75520003 75520108 -121675324 - PB1D9 SINE Alu -11 109 1 5 1161 568 305 138 19 chr1 75520414 75520675 -121674757 - B4 SINE B4 0 292 1 5 1161 1253 41 0 0 chr1 75520828 75520974 -121674458 - B1_Mus2 SINE Alu 0 147 2 5 1161 421 308 72 69 chr1 75523175 75523538 -121671894 - MER67A LTR ERV1 -143 400 5 5 1161 230 319 0 0 chr1 75523543 75523615 -121671817 - MER31B LTR ERV1 -393 73 2 5 1161 295 316 0 0 chr1 75525746 75525841 -121669591 + GA-rich Low_complexity Low_complexity 3 97 0 5 1161 317 273 114 50 chr1 75527655 75527796 -121667636 - ID_B1 SINE B4 -3 221 75 5 1161 227 240 77 39 chr1 75527798 75527876 -121667556 + MIRb SINE MIR 188 268 0 5 1161 195 259 106 0 chr1 75528066 75528151 -121667281 - MIRb SINE MIR -57 211 118 6 1161 318 50 0 0 chr1 75528235 75528275 -121667157 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1161 917 280 41 19 chr1 75528285 75528554 -121666878 - B4A SINE B4 -16 276 2 6 1161 270 0 0 0 chr1 75530508 75530538 -121664894 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 6 1161 493 99 0 0 chr1 75531546 75531627 -121663805 - L1Md_F2 LINE L1 -1 6581 6501 6 1161 324 0 0 0 chr1 75532000 75532036 -121663396 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1161 364 274 108 34 chr1 75532268 75532436 -121662996 - MIR SINE MIR -77 191 22 6 1161 865 152 0 7 chr1 75533288 75533427 -121662005 - B1_Mur1 SINE Alu -2 147 10 6 1161 280 254 72 88 chr1 75534612 75534737 -121660695 - MT2B2 LTR ERVL -280 304 182 6 1161 402 144 60 0 chr1 75534652 75534741 -121660691 - B1_Mus1 SINE Alu -4 116 14 6 1161 304 245 28 93 chr1 75534975 75535083 -121660349 + MT2B2 LTR ERVL 157 257 -327 7 1161 643 203 0 23 chr1 75534992 75535123 -121660309 + B1_Mm SINE Alu 12 139 -8 7 1161 627 51 0 0 chr1 75535138 75535217 -121660215 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 7 1161 195 232 0 0 chr1 75535223 75535279 -121660153 + GA-rich Low_complexity Low_complexity 2 57 0 7 1161 355 264 6 0 chr1 75536014 75536108 -121659324 - PB1D10 SINE Alu -16 104 8 7 1161 1503 69 16 0 chr1 75537546 75537735 -121657697 + B2_Mm2 SINE B2 2 193 -2 7 1161 280 277 15 0 chr1 75537760 75537825 -121657607 + ID4_ SINE ID 1 66 -17 7 1161 387 292 159 45 chr1 75538125 75538326 -121657106 - MIR SINE MIR -8 254 31 7 1161 221 247 118 14 chr1 75538536 75538642 -121656790 + MIR SINE MIR 64 179 -97 7 1161 1395 79 17 0 chr1 75539183 75539361 -121656071 - B2_Mm2 SINE B2 -14 181 1 7 1161 335 248 84 0 chr1 75539405 75539488 -121655944 + B3A SINE B2 12 102 -96 8 1161 351 329 28 35 chr1 75539519 75539661 -121655771 - MLT1N2 LTR MaLR -351 211 71 8 1161 1203 52 0 0 chr1 75540731 75540885 -121654547 + B2_Mm2 SINE B2 1 154 -41 8 1161 234 0 0 0 chr1 75540886 75540912 -121654520 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1161 1001 216 188 25 chr1 75541026 75541340 -121654092 - MLT1C LTR MaLR -94 373 9 8 1161 361 207 85 0 chr1 75541608 75541690 -121653742 + MTE2a LTR MaLR 4 92 -287 8 1161 584 216 6 119 chr1 75541731 75541848 -121653584 - B1_Mur1 SINE Alu 0 149 51 8 1161 1206 48 7 0 chr1 75541848 75541995 -121653437 - B1_Mus1 SINE Alu 0 148 1 8 1161 584 216 6 119 chr1 75541995 75542045 -121653387 - B1_Mur1 SINE Alu -99 50 1 8 1161 248 111 0 0 chr1 75542111 75542147 -121653285 + MTE2a LTR MaLR 215 250 -129 8 1161 204 179 0 0 chr1 75544703 75544742 -121650690 + GA-rich Low_complexity Low_complexity 2 40 0 8 1161 297 51 0 0 chr1 75551375 75551414 -121644018 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1161 385 122 27 0 chr1 75552816 75552890 -121642542 + (GGA)n Simple_repeat Simple_repeat 1 76 0 9 1161 468 0 0 0 chr1 75554757 75554809 -121640623 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1161 930 125 34 27 chr1 75554851 75554999 -121640433 - B1_Mur3 SINE Alu 0 149 1 9 1161 272 257 14 14 chr1 75555045 75555116 -121640316 - B4 SINE B4 -212 80 10 9 1161 189 0 0 0 chr1 75557456 75557477 -121637955 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1161 2360 131 30 73 chr1 75559478 75559973 -121635459 + RMER6C LTR ERVK 111 584 -106 9 1161 239 204 0 0 chr1 75559975 75560019 -121635413 + RMER6C LTR ERVK 704 747 -9 9 1161 265 192 19 0 chr1 75560423 75560475 -121634957 + PB1D7 SINE Alu 2 54 -66 9 1161 210 37 0 0 chr1 75561084 75561111 -121634321 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 9 1161 243 170 0 0 chr1 75561111 75561158 -121634274 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1161 290 235 138 4 chr1 75561158 75561256 -121634176 - PB1D7 SINE Alu -27 120 3 9 1161 740 213 73 0 chr1 75561274 75561410 -121634022 - B1_Mur3 SINE Alu -2 147 2 1 1161 297 289 67 76 chr1 75561318 75561423 -121634009 - MT2B LTR ERVL -345 256 153 1 1161 596 277 19 6 chr1 75561439 75561599 -121633833 - RSINE1 SINE B4 0 165 4 1 1161 423 301 124 34 chr1 75563014 75563279 -121632153 - B4A SINE B4 -2 290 2 1 1161 225 0 0 0 chr1 75563303 75563328 -121632104 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 1 1161 1236 62 0 24 chr1 75563328 75563494 -121631938 - B2_Mm2 SINE B2 -33 162 1 1 1161 1022 109 13 39 chr1 75564326 75564479 -121630953 + B1_Mur4 SINE Alu 1 149 -1 1 1161 1158 187 148 0 chr1 75565273 75565412 -121630020 - Lx9 LINE L1 0 7644 7479 1 1161 420 111 0 0 chr1 75565412 75565475 -121629957 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1161 1158 187 148 0 chr1 75565475 75565619 -121629813 - Lx9 LINE L1 -166 7478 7320 1 1161 548 53 13 0 chr1 75565679 75565755 -121629677 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1161 2070 81 7 14 chr1 75565755 75566043 -121629389 - ORR1A2 LTR MaLR -3 324 39 1 1161 438 167 0 0 chr1 75566048 75566120 -121629312 - Lx9 LINE L1 -372 7272 7201 1 1161 862 292 84 24 chr1 75566405 75566738 -121628694 - MLT1A0 LTR MaLR -1 364 12 1 1161 227 298 188 43 chr1 75566916 75567172 -121628260 - MLT1N2 LTR MaLR -5 557 265 1 1161 454 303 96 148 chr1 75567433 75567995 -121627437 + L1MDa LINE L1 65 597 -6036 1 1161 1272 293 72 21 chr1 75568098 75568624 -121626808 + L1MDa LINE L1 4859 5411 -1126 1 1161 562 211 47 105 chr1 75568692 75568883 -121626549 - B3A SINE B2 -16 182 3 1 1161 282 262 215 0 chr1 75568904 75569011 -121626421 + L1MDa LINE L1 5452 5581 -956 1 1161 856 197 0 27 chr1 75569014 75569160 -121626272 + B1_Mur1 SINE Alu 1 142 -7 1 1161 243 0 0 0 chr1 75569194 75569221 -121626211 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1161 325 360 136 13 chr1 75569258 75569486 -121625946 - L1MD1 LINE L1 -398 5844 5589 1 1161 2416 82 25 6 chr1 75569892 75570213 -121625219 - ORR1A2 LTR MaLR 0 327 1 1 1161 365 286 31 31 chr1 75571849 75571979 -121623453 + L2 LINE L2 2629 2758 -661 1 1161 779 230 7 0 chr1 75572070 75572218 -121623214 - RSINE1 SINE B4 -15 150 2 1 1161 436 311 42 58 chr1 75572242 75572631 -121622801 - MLT1A1 LTR MaLR 0 408 1 1 1161 233 333 105 55 chr1 75572632 75572813 -121622619 + L2 LINE L2 2788 2977 -442 1 1161 3464 35 5 0 chr1 75573149 75573547 -121621885 - MTB LTR MaLR 0 400 1 1 1161 3159 101 80 8 chr1 75573646 75574156 -121621276 + RMER6A LTR ERVK 57 603 -153 1 1161 1443 65 0 31 chr1 75574981 75575173 -121620259 - B2_Mm2 SINE B2 -8 187 2 1 1161 1202 124 11 26 chr1 75575183 75575374 -121620058 - B2_Mm2 SINE B2 -5 190 3 1 1161 300 247 93 12 chr1 75575521 75575607 -121619825 + ID_B1 SINE B4 131 223 -1 1 1161 471 155 0 0 chr1 75576492 75576576 -121618856 + CT-rich Low_complexity Low_complexity 2 85 0 1 1161 355 335 29 83 chr1 75577035 75577053 -121618379 + MER113 DNA MER1_type 290 302 -219 1 1161 610 172 8 41 chr1 75577053 75577174 -121618258 - PB1D9 SINE Alu -1 119 3 1 1161 355 335 29 83 chr1 75577174 75577396 -121618036 + MER113 DNA MER1_type 303 517 -4 1 1161 327 49 0 0 chr1 75579350 75579391 -121616041 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1161 603 229 0 0 chr1 75579400 75579509 -121615923 - MLT1A0 LTR MaLR -1 364 256 1 1161 390 42 0 0 chr1 75579526 75579574 -121615858 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1161 1329 205 84 27 chr1 75579603 75579973 -121615459 - MTD LTR MaLR -2 405 1 1 1161 899 223 49 52 chr1 75579985 75580273 -121615159 - L1MA6 LINE L1 -75 6225 5939 1 1161 979 102 22 11 chr1 75580295 75580473 -121614959 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1161 402 230 204 15 chr1 75580473 75580601 -121614831 - RSINE1 SINE B4 -7 158 3 1 1161 424 134 23 47 chr1 75580624 75580710 -121614722 - B1_Mur4 SINE Alu 0 150 67 1 1161 326 304 93 31 chr1 75580773 75580902 -121614530 - MLT1A0 LTR MaLR -236 172 36 1 1161 188 67 33 0 chr1 75580902 75580932 -121614500 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1161 608 38 13 0 chr1 75580932 75581011 -121614421 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1161 1632 36 0 20 chr1 75581458 75581654 -121613778 - B2_Mm1a SINE B2 0 193 2 1 1161 423 38 0 0 chr1 75582078 75582131 -121613301 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1161 677 337 123 31 chr1 75582140 75582498 -121612934 - LTR31 LTR ERV1 -103 516 126 1 1161 342 304 75 45 chr1 75582814 75582888 -121612544 - L1M2 LINE L1 -1666 4477 4405 1 1161 360 0 0 0 chr1 75582888 75582928 -121612504 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1161 342 304 75 45 chr1 75582928 75583053 -121612379 - L1M2 LINE L1 -1739 4404 4273 1 1161 461 214 87 0 chr1 75583076 75583179 -121612253 - PB1D9 SINE Alu -7 113 2 1 1161 1123 58 0 0 chr1 75583930 75584069 -121611363 - B2_Mm2 SINE B2 -56 139 1 1 1161 297 0 0 0 chr1 75585058 75585091 -121610341 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1161 1223 191 55 59 chr1 75585091 75585363 -121610069 + MTD LTR MaLR 149 419 0 1 1161 512 226 104 8 chr1 75586401 75586535 -121608897 - ID_B1 SINE B4 -77 147 1 1 1161 251 290 137 38 chr1 75586949 75587132 -121608300 + Charlie25 DNA MER1_type 1432 1632 -892 1 1161 1297 27 0 0 chr1 75587435 75587582 -121607850 - B1_Mus2 SINE Alu 0 147 1 1 1161 986 227 100 14 chr1 75587598 75587888 -121607544 - BGLII_B LTR ERVK -21 420 106 1 1161 1548 199 53 69 chr1 75588313 75588762 -121606670 + RMER10A LTR ERVL 1 442 0 1 1161 259 289 92 0 chr1 75589289 75589365 -121606067 + B4A SINE B4 2 84 -208 1 1161 2115 74 89 16 chr1 75589369 75589673 -121605759 - ORR1A2 LTR MaLR 0 327 2 1 1161 402 325 63 16 chr1 75589681 75589872 -121605560 + B4A SINE B4 88 287 -5 1 1161 472 15 15 15 chr1 75590212 75590278 -121605154 + (CAAAAA)n Simple_repeat Simple_repeat 1 66 0 1 1161 582 338 84 18 chr1 75590297 75590583 -121604849 - MLT1A0 LTR MaLR -25 340 36 1 1161 282 308 13 0 chr1 75591814 75591892 -121603540 - ID4_ SINE ID -2 81 3 1 1161 594 292 6 53 chr1 75591938 75592108 -121603324 + RSINE1 SINE B4 2 163 -2 1 1161 183 139 0 0 chr1 75592112 75592148 -121603284 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1161 572 256 0 0 chr1 75592181 75592306 -121603126 - B3A SINE B2 -72 126 2 1 1161 293 312 84 28 chr1 75592322 75592464 -121602968 + MLT1L LTR MaLR 237 386 -224 1 1161 827 279 91 144 chr1 75592503 75593009 -121602423 - MER70B LTR ERVL -99 479 1 1 1161 1183 69 0 0 chr1 75593921 75594066 -121601366 - B1_Mus2 SINE Alu 0 147 3 1 1161 243 0 0 0 chr1 75594130 75594157 -121601275 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1 1161 732 54 0 0 chr1 75594849 75594942 -121600490 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1161 892 163 113 28 chr1 75594942 75595119 -121600313 - RLTR20B3 LTR ERVK -385 192 1 1 1161 937 149 13 7 chr1 75595851 75596000 -121599432 - B1_Mur4 SINE Alu 0 150 1 1 1161 242 272 107 58 chr1 75596030 75596151 -121599281 - MER58B DNA MER1_type -39 302 176 1 1161 1191 75 0 0 chr1 75596155 75596302 -121599130 + B1_Mus1 SINE Alu 1 147 -1 1 1161 537 16 0 0 chr1 75596305 75596367 -121599065 + (CAAG)n Simple_repeat Simple_repeat 1 62 0 1 1161 234 0 0 0 chr1 75597556 75597582 -121597850 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1161 241 30 0 0 chr1 75597582 75597615 -121597817 - B1_Mm SINE Alu 0 147 115 1 1161 1159 52 0 0 chr1 75597619 75597755 -121597677 + B1_Mus1 SINE Alu 1 136 -12 1 1161 243 0 0 0 chr1 75597755 75597782 -121597650 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1161 215 272 37 12 chr1 75597808 75597890 -121597542 - RSINE1 SINE B4 0 165 82 1 1161 223 380 0 0 chr1 75598035 75598114 -121597318 - RSINE1 SINE B4 -86 79 1 1 1161 201 227 0 0 chr1 75598685 75598729 -121596703 + C-rich Low_complexity Low_complexity 1 44 0 1 1161 21 0 0 0 chr1 75599149 75599170 -121596262 + AT_rich Low_complexity Low_complexity 1 21 0 1 1161 186 118 0 0 chr1 75599245 75599279 -121596153 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1161 739 256 125 38 chr1 75599297 75599561 -121595871 - B4A SINE B4 -4 288 2 1 1161 331 191 11 226 chr1 75599722 75599906 -121595526 + L1MC4 LINE L1 7787 8036 -6 1 1161 195 72 0 67 chr1 75600565 75600610 -121594822 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1 1161 202 258 85 11 chr1 75600610 75600704 -121594728 - L2 LINE L2 -646 2773 2673 1 1161 477 0 0 0 chr1 75600707 75600760 -121594672 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1161 558 206 78 71 chr1 75601824 75601965 -121593467 - RSINE1 SINE B4 -21 144 3 1 1161 309 51 0 0 chr1 75602336 75602375 -121593057 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1161 426 246 41 41 chr1 75602496 75602668 -121592764 - MIR SINE MIR -46 222 51 1 1161 547 307 73 37 chr1 75602824 75603179 -121592253 + ORR1D2 LTR MaLR 1 368 -2 1 1161 1391 160 4 0 chr1 75603284 75603509 -121591923 - URR1A DNA MER1_type 0 226 1 1 1161 566 261 75 0 chr1 75604115 75604249 -121591183 + ID_B1 SINE B4 81 224 0 1 1161 472 303 33 33 chr1 75604275 75604425 -121591007 + RSINE1 SINE B4 12 161 -4 1 1161 368 247 97 97 chr1 75604485 75604504 -121590928 - CYRA11_Mm Unknown Y-chromosome -213 404 386 1 1161 913 147 108 6 chr1 75604504 75604662 -121590770 + URR1A DNA MER1_type 2 175 -51 1 1161 921 270 97 13 chr1 75604750 75605050 -121590382 + MER63C DNA AcHobo 278 602 -328 1 1161 469 300 108 44 chr1 75605065 75605316 -121590116 + MER63C DNA AcHobo 634 900 -30 1 1161 403 234 47 60 chr1 75605612 75605762 -121589670 - ORR1E LTR MaLR -163 196 49 1 1161 243 0 0 0 chr1 75606372 75606399 -121589033 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1161 240 259 36 40 chr1 75607554 75607657 -121587775 + MIRm SINE MIR 15 127 -149 1 1161 691 177 32 8 chr1 75607760 75607885 -121587547 - B3 SINE B2 -88 128 1 1 1161 861 174 0 0 chr1 75607939 75608100 -121587332 + CT-rich Low_complexity Low_complexity 2 162 0 2 1161 420 186 22 34 chr1 75608100 75608189 -121587243 - B1_Mur4 SINE Alu -2 148 61 2 1161 1379 86 37 0 chr1 75608441 75608628 -121586804 - B2_Mm2 SINE B2 -1 194 1 2 1161 547 286 23 45 chr1 75609779 75609955 -121585477 - ID_B1 SINE B4 -52 172 1 2 1161 451 294 32 32 chr1 75609975 75610133 -121585299 - LTR16B LTR ERVL 0 463 306 2 1161 210 71 0 0 chr1 75610507 75610535 -121584897 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1161 3210 280 104 26 chr1 75610546 75611640 -121583792 + Lx8 LINE L1 6201 7388 -85 2 1161 1536 21 0 0 chr1 75611640 75611932 -121583500 + (TGG)n Simple_repeat Simple_repeat 1 292 0 2 1161 2882 279 109 28 chr1 75611932 75612015 -121583417 + Lx8 LINE L1 7389 7472 -1 2 1161 2576 95 141 25 chr1 75612256 75612688 -121582744 - RLTR45 LTR ERVK 0 482 1 2 1161 198 376 39 23 chr1 75614672 75614800 -121580632 - MIRb SINE MIR -58 210 81 2 1161 267 31 0 0 chr1 75614837 75614869 -121580563 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1161 544 325 98 16 chr1 75615993 75616237 -121579195 + B4 SINE B4 7 270 -22 2 1161 259 309 0 0 chr1 75616369 75616437 -121578995 - ID4_ SINE ID -14 69 2 2 1161 346 305 8 33 chr1 75616448 75616570 -121578862 - PB1 SINE Alu -7 120 2 2 1161 421 305 103 0 chr1 75616593 75616806 -121578626 + L1MD2 LINE L1 6124 6358 -1 2 1161 1261 161 4 89 chr1 75617125 75617371 -121578061 - URR1A DNA MER1_type -1 225 1 2 1161 328 287 81 90 chr1 75617396 75617618 -121577814 + RMER15 LTR ERVL 353 572 -3 2 1161 5246 105 4 0 chr1 75618324 75619069 -121576363 - L1_Mus2 LINE L1 -882 5001 4254 2 1161 8125 64 0 3 chr1 75619067 75620628 -121574804 + L1_Mus2 LINE L1 5012 6565 -1 2 1161 333 0 0 0 chr1 75620686 75620723 -121574709 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1161 180 0 0 0 chr1 75620723 75620742 -121574690 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1161 312 48 0 0 chr1 75620742 75620783 -121574649 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1161 322 299 19 70 chr1 75621231 75621389 -121574043 + MurSatRep1 Unknown Unknown 614 763 -1374 2 1161 347 293 29 29 chr1 75621499 75621636 -121573796 + MMSAT4 Satellite Satellite 32 168 0 2 1161 228 292 34 34 chr1 75621835 75621952 -121573480 + MMSAT4 Satellite Satellite 32 148 -20 2 1161 257 233 0 0 chr1 75622076 75622136 -121573296 + MMSAT4 Satellite Satellite 31 90 -78 2 1161 248 385 0 0 chr1 75622136 75622188 -121573244 + MurSatRep1 Unknown Unknown 1914 2017 -120 2 1161 22 35 0 0 chr1 75622811 75622840 -121572592 + AT_rich Low_complexity Low_complexity 1 29 0 2 1161 1215 98 43 16 chr1 75622942 75623128 -121572304 - B2_Mm2 SINE B2 -3 192 2 2 1161 285 295 129 7 chr1 75623159 75623299 -121572133 + RMER5 LTR ERV1 235 391 -143 2 1161 527 268 58 31 chr1 75623314 75623491 -121571941 + B3A SINE B2 27 192 -3 2 1161 523 315 45 25 chr1 75623490 75623692 -121571740 - MLT1J LTR MaLR -303 209 4 2 1161 505 260 22 37 chr1 75623911 75624047 -121571385 + MTE2b LTR MaLR 104 237 -142 2 1161 1343 91 0 0 chr1 75624060 75624236 -121571196 - B2_Mm2 SINE B2 -18 177 2 2 1161 261 351 53 0 chr1 75624312 75624406 -121571026 - MIR SINE MIR -111 151 53 2 1161 785 208 0 6 chr1 75624599 75624778 -121570654 + GA-rich Low_complexity Low_complexity 3 180 0 2 1161 352 100 0 0 chr1 75624778 75624828 -121570604 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 2 1161 202 139 28 0 chr1 75625513 75625549 -121569883 + CT-rich Low_complexity Low_complexity 3 39 0 2 1161 276 172 0 0 chr1 75625718 75625776 -121569656 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1161 488 271 59 91 chr1 75625776 75625963 -121569469 - B4 SINE B4 0 292 112 2 1161 670 191 24 8 chr1 75625842 75625969 -121569463 - B1_Mur1 SINE Alu 0 149 21 2 1161 661 309 40 0 chr1 75625993 75626142 -121569290 - B4A SINE B4 -65 227 73 2 1161 576 0 0 0 chr1 75626262 75626326 -121569106 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1161 3424 183 56 54 chr1 75626346 75626521 -121568911 - RMER1B Other Other -13 1053 861 2 1161 1375 79 5 35 chr1 75626521 75626719 -121568713 - B2_Mm1a SINE B2 0 193 2 2 1161 3424 190 49 57 chr1 75626719 75627326 -121568106 - RMER1B Other Other -206 860 355 2 1161 1574 224 110 6 chr1 75627602 75627956 -121567476 + MTD LTR MaLR 29 419 0 2 1161 306 0 0 0 chr1 75628081 75628115 -121567317 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1161 357 269 74 33 chr1 75628161 75628320 -121567112 - MTEa LTR MaLR -19 360 163 2 1161 285 155 0 0 chr1 75628326 75628384 -121567048 + GA-rich Low_complexity Low_complexity 4 61 0 2 1161 245 292 135 0 chr1 75628405 75628501 -121566931 - MTEa LTR MaLR -204 175 67 2 1162 333 282 68 0 chr1 75628554 75628671 -121566761 + L1MC3 LINE L1 5907 6031 -1851 2 1162 528 16 0 0 chr1 75628709 75628770 -121566662 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1162 242 191 0 0 chr1 75628883 75628930 -121566502 + L1MC3 LINE L1 6241 6287 -1595 2 1162 273 360 0 0 chr1 75628970 75629045 -121566387 - ID4 SINE ID -8 75 1 2 1162 801 205 25 7 chr1 75629045 75629226 -121566206 - B3 SINE B2 -2 196 5 2 1162 702 275 117 43 chr1 75629417 75629649 -121565783 + L1MC3 LINE L1 6496 6742 -1043 2 1162 805 273 138 101 chr1 75629649 75630163 -121565269 + MT2A LTR ERVL 1 533 0 2 1162 702 275 117 43 chr1 75630163 75630299 -121565133 + L1MC3 LINE L1 6743 6891 -894 2 1162 332 333 158 50 chr1 75630484 75630762 -121564670 + L1MC3 LINE L1 7007 7314 -728 2 1162 321 332 79 47 chr1 75630853 75631054 -121564378 + L1MC3 LINE L1 7455 7661 -381 2 1162 1256 150 56 0 chr1 75631054 75631267 -121564165 - URR1B DNA MER1_type 0 225 1 2 1162 321 332 79 47 chr1 75631267 75631494 -121563938 + L1MC3 LINE L1 7662 7897 -145 2 1162 387 0 0 0 chr1 75631494 75631537 -121563895 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1162 441 0 0 0 chr1 75631537 75631585 -121563847 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1162 266 204 0 0 chr1 75631810 75631864 -121563568 + C-rich Low_complexity Low_complexity 1 54 0 2 1162 853 188 65 141 chr1 75631865 75632113 -121563319 + MTC LTR MaLR 5 233 -188 2 1162 765 257 5 55 chr1 75632567 75632769 -121562663 - B3A SINE B2 0 198 7 2 1162 244 120 0 39 chr1 75632857 75632909 -121562523 + CT-rich Low_complexity Low_complexity 5 54 0 2 1162 24 67 0 0 chr1 75633776 75633821 -121561611 + AT_rich Low_complexity Low_complexity 1 45 0 2 1162 610 265 46 78 chr1 75633974 75634263 -121561169 + ORR1E LTR MaLR 1 274 -96 2 1162 380 211 13 0 chr1 75634321 75634397 -121561035 + ORR1E LTR MaLR 301 377 -2 2 1162 753 199 169 11 chr1 75634623 75634806 -121560626 + B3 SINE B2 5 216 0 2 1162 419 308 0 34 chr1 75634830 75634978 -121560454 + MER117 DNA MER1_type 22 164 -33 2 1162 198 0 0 0 chr1 75635137 75635159 -121560273 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1162 1627 130 0 0 chr1 75635619 75635889 -121559543 + ORR1A4 LTR MaLR 1 326 0 2 1162 803 230 83 57 chr1 75636100 75636385 -121559047 + RLTR11B LTR ERVK 1 289 -152 2 1162 510 197 117 45 chr1 75636463 75636617 -121558815 + RLTR11B LTR ERVK 277 441 -12 2 1162 869 136 71 7 chr1 75637574 75637715 -121557717 - B1_Mur4 SINE Alu 0 150 1 2 1162 403 123 0 24 chr1 75637962 75638045 -121557387 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1162 1025 225 28 19 chr1 75638249 75638462 -121556970 + B3 SINE B2 2 216 0 2 1162 247 255 144 11 chr1 75638878 75639016 -121556416 - L2b LINE L2 -88 3299 3149 2 1162 1301 94 11 6 chr1 75639369 75639551 -121555881 + B2_Mm1t SINE B2 1 183 -10 2 1162 939 163 0 7 chr1 75639563 75639711 -121555721 + B1_Mus1 SINE Alu 1 147 -1 2 1162 2512 97 61 94 chr1 75639948 75640439 -121554993 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1162 815 296 5 49 chr1 75640443 75640618 -121554814 + B3 SINE B2 1 169 -47 2 1162 2035 85 115 0 chr1 75640618 75640913 -121554519 - ORR1A4 LTR MaLR 0 329 1 2 1162 815 296 5 49 chr1 75640913 75640961 -121554471 + B3 SINE B2 170 214 -2 2 1162 180 0 0 0 chr1 75640992 75641012 -121554420 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 2 1162 363 203 81 0 chr1 75641021 75641095 -121554337 + ID4 SINE ID 2 81 -2 2 1162 2051 168 36 34 chr1 75641920 75642308 -121553124 - MTB_Mm LTR MaLR -10 397 9 2 1162 192 125 0 0 chr1 75643571 75643603 -121551829 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1162 232 266 16 12 chr1 75643667 75643748 -121551684 - L1ME2 LINE L1 -97 6067 5989 2 1162 796 267 16 16 chr1 75644224 75644407 -121551025 + B3 SINE B2 1 183 -33 2 1162 227 208 0 0 chr1 75644417 75644465 -121550967 + (CAA)n Simple_repeat Simple_repeat 2 49 0 2 1162 333 250 148 10 chr1 75644571 75644672 -121550760 + RMER5 LTR ERV1 53 167 -367 2 1162 491 263 209 5 chr1 75644710 75644835 -121550597 + RMER5 LTR ERV1 230 363 -171 2 1162 711 0 0 0 chr1 75644835 75644914 -121550518 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2 1162 491 263 209 5 chr1 75644914 75644975 -121550457 + RMER5 LTR ERV1 364 453 -81 2 1162 1248 213 68 10 chr1 75644976 75645284 -121550148 + ORR1D1 LTR MaLR 1 326 -48 2 1162 372 231 63 0 chr1 75645281 75645399 -121550033 + B3 SINE B2 64 198 0 2 1162 1448 60 22 6 chr1 75645516 75645699 -121549733 + B2_Mm2 SINE B2 2 187 -8 2 1162 735 189 3 8 chr1 75645762 75645900 -121549532 - B1_Mur1 SINE Alu -6 144 5 2 1162 850 282 58 43 chr1 75645988 75646266 -121549166 - B4A SINE B4 -4 288 7 2 1162 951 248 14 14 chr1 75646280 75646501 -121548931 - ID_B1 SINE B4 0 224 4 2 1162 579 311 120 62 chr1 75646551 75646804 -121548628 - MLT1A1 LTR MaLR -2 406 132 2 1162 269 109 0 18 chr1 75646804 75646860 -121548572 + (ATG)n Simple_repeat Simple_repeat 3 57 0 2 1162 525 246 23 23 chr1 75646860 75646989 -121548443 - B1_Mus1 SINE Alu -16 132 4 2 1162 579 311 120 62 chr1 75646989 75647118 -121548314 - MLT1A1 LTR MaLR -277 131 2 2 1162 213 39 0 0 chr1 75647229 75647255 -121548177 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1162 966 95 7 0 chr1 75647255 75647392 -121548040 - B1_Mus2 SINE Alu 0 147 10 2 1162 2082 130 17 17 chr1 75647452 75647811 -121547621 - RLTR15 LTR ERVK 0 359 1 2 1162 613 178 92 15 chr1 75648628 75648759 -121546673 + RSINE1 SINE B4 3 143 -22 2 1162 342 0 0 0 chr1 75648765 75648803 -121546629 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1162 237 211 0 0 chr1 75649408 75649465 -121545967 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1162 292 323 0 0 chr1 75650130 75650223 -121545209 + C-rich Low_complexity Low_complexity 1 93 0 3 1162 272 267 53 0 chr1 75650567 75650642 -121544790 + MER63D DNA AcHobo 6 84 -977 3 1162 570 275 137 26 chr1 75651596 75651947 -121543485 - MLT1B LTR MaLR 0 390 1 3 1162 305 327 0 0 chr1 75652767 75652923 -121542509 + (GGGTG)n Simple_repeat Simple_repeat 3 158 0 3 1162 272 219 22 89 chr1 75653544 75653634 -121541798 - MIR3 SINE MIR -13 195 112 3 1162 1002 227 117 34 chr1 75654849 75655114 -121540318 - B4A SINE B4 -4 288 2 3 1162 938 160 0 13 chr1 75655126 75655278 -121540154 - B1_Mur4 SINE Alu 0 150 1 3 1162 1169 251 91 3 chr1 75655999 75656339 -121539093 - ORR1D2 LTR MaLR 0 370 1 3 1162 1344 105 16 5 chr1 75656362 75656554 -121538878 - B2_Mm2 SINE B2 0 195 2 3 1162 554 262 41 0 chr1 75657095 75657217 -121538215 + RSINE1 SINE B4 1 127 -38 3 1162 851 304 13 4 chr1 75657821 75658046 -121537386 + B4A SINE B4 4 230 -62 3 1162 529 237 209 7 chr1 75658046 75658199 -121537233 + B3 SINE B2 1 184 -32 3 1162 240 211 13 101 chr1 75658556 75658635 -121536797 + B4A SINE B4 220 291 -1 3 1162 390 312 72 44 chr1 75659533 75659784 -121535648 + LFSINE_Vert SINE SINE 2 259 -200 3 1162 500 331 80 86 chr1 75659855 75661235 -121534197 - L2 LINE L2 -622 2797 1427 3 1162 1949 148 24 18 chr1 75661375 75661705 -121533727 + MTB_Mm LTR MaLR 76 407 0 3 1162 6300 56 20 37 chr1 75661726 75662562 -121532870 - RLTR13B2 LTR ERVK 0 822 1 3 1162 990 169 97 161 chr1 75662562 75662872 -121532560 - ORR1D1 LTR MaLR -84 290 1 3 1162 472 115 64 0 chr1 75662895 75662973 -121532459 - ORR1D1 LTR MaLR -291 83 1 3 1162 223 271 0 17 chr1 75663176 75663236 -121532196 - L3 LINE CR1 -577 3912 3854 3 1162 4373 38 2 13 chr1 75663480 75664011 -121531421 - L1Md_F2 LINE L1 0 6582 6058 3 1162 442 268 62 5 chr1 75664835 75664973 -121530459 + MER20 DNA MER1_type 7 148 -635 3 1162 308 282 0 100 chr1 75665267 75665397 -121530035 - ID_B1 SINE B4 -1 223 107 3 1162 354 167 60 15 chr1 75665467 75665534 -121529898 - HAL1-3A_ME LINE L1 -813 2045 1976 3 1162 223 360 0 88 chr1 75665659 75665796 -121529636 - B4A SINE B4 -125 167 43 3 1162 426 121 0 0 chr1 75665796 75665862 -121529570 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 3 1162 313 252 73 40 chr1 75665869 75665993 -121529439 + L1MCa LINE L1 1352 1479 -5029 3 1162 216 135 0 0 chr1 75666110 75666147 -121529285 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 3 1162 243 250 41 14 chr1 75667004 75667077 -121528355 - B1F1 SINE Alu -51 98 24 3 1162 525 295 103 26 chr1 75667095 75667335 -121528097 - MLT1D LTR MaLR -20 485 216 3 1162 227 270 16 0 chr1 75667494 75667557 -121527875 - MLT1D LTR MaLR -422 83 20 3 1162 784 300 174 13 chr1 75668760 75669071 -121526361 + MLT1A0 LTR MaLR 3 363 -2 3 1162 343 302 0 31 chr1 75669450 75669580 -121525852 - L1ME4a LINE L1 -201 5923 5798 3 1162 1024 271 69 11 chr1 75669797 75670073 -121525359 + B4A SINE B4 1 292 0 3 1162 1053 240 68 4 chr1 75670758 75670992 -121524440 + B4 SINE B4 21 269 -23 3 1162 387 41 0 0 chr1 75670993 75671042 -121524390 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1162 391 282 113 27 chr1 75671297 75671474 -121523958 + MLT1E2 LTR MaLR 1 193 -434 3 1162 1580 201 70 3 chr1 75671474 75671789 -121523643 + MTC LTR MaLR 1 336 -85 3 1162 1414 186 30 171 chr1 75671775 75672143 -121523289 + MTC-int LTR MaLR 701 1067 -191 3 1162 925 138 52 40 chr1 75672143 75672316 -121523116 - B2_Mm2 SINE B2 -19 176 2 3 1162 1414 164 30 143 chr1 75672316 75672515 -121522917 + MTC-int LTR MaLR 1068 1258 0 3 1162 944 146 0 12 chr1 75672515 75672675 -121522757 + MTC LTR MaLR 1 158 -263 3 1162 836 312 95 21 chr1 75672644 75672971 -121522461 + MLT1E2 LTR MaLR 277 627 0 3 1162 607 247 126 88 chr1 75673267 75673745 -121521687 - RLTR11A2 LTR ERVK -4 564 1 3 1162 342 0 0 0 chr1 75673925 75673963 -121521469 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1162 189 0 0 0 chr1 75673963 75673983 -121521449 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1162 613 290 121 66 chr1 75674009 75674218 -121521214 - B4 SINE B4 -3 289 77 3 1162 1410 71 11 11 chr1 75674218 75674403 -121521029 + B2_Mm2 SINE B2 2 186 -9 3 1162 613 290 121 66 chr1 75674403 75674466 -121520966 - B4 SINE B4 -216 76 2 3 1162 465 66 0 0 chr1 75674723 75674784 -121520648 + (TTA)n Simple_repeat Simple_repeat 1 61 0 3 1162 800 277 23 93 chr1 75675834 75676136 -121519296 - B4A SINE B4 0 292 12 3 1162 466 331 36 12 chr1 75676156 75676324 -121519108 + MIRb SINE MIR 96 267 -1 3 1162 548 250 0 57 chr1 75676417 75676540 -121518892 - PB1 SINE Alu -5 122 7 3 1162 248 180 0 47 chr1 75678139 75678203 -121517229 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 3 1162 342 319 53 35 chr1 75678454 75678623 -121516809 - MLT2D LTR ERVL -57 357 186 3 1162 899 189 0 98 chr1 75678604 75678809 -121516623 - B3 SINE B2 -10 185 1 3 1162 542 330 61 14 chr1 75678848 75679125 -121516307 + B4A SINE B4 1 290 -2 3 1162 220 313 15 0 chr1 75679127 75679194 -121516238 + (CATG)n Simple_repeat Simple_repeat 3 70 0 3 1162 511 230 50 36 chr1 75679226 75679366 -121516066 - MLT2D LTR ERVL -258 156 15 3 1162 243 118 0 0 chr1 75679489 75679523 -121515909 + ORR1C1 LTR MaLR 1 34 -350 3 1162 724 144 39 31 chr1 75679508 75679637 -121515795 + ORR1C1 LTR MaLR 249 378 0 3 1162 800 276 39 0 chr1 75679659 75679862 -121515570 - B3 SINE B2 -5 211 1 3 1162 899 302 136 14 chr1 75679870 75680239 -121515193 + MLT1D LTR MaLR 86 499 -6 3 1162 386 302 119 0 chr1 75680497 75680656 -121514776 - MIR SINE MIR -13 249 72 3 1162 1193 252 72 28 chr1 75680972 75681331 -121514101 + MTEa LTR MaLR 1 375 -4 3 1162 257 304 11 32 chr1 75682074 75682169 -121513263 + CT-rich Low_complexity Low_complexity 4 96 0 3 1162 217 327 134 44 chr1 75682188 75682500 -121512932 - L2b LINE L2 -14 3412 3072 3 1162 661 294 68 88 chr1 75682539 75682834 -121512598 - B4A SINE B4 -3 289 1 3 1162 3473 38 0 0 chr1 75683518 75683914 -121511518 + MTA_Mm LTR MaLR 1 396 0 3 1162 9484 27 6 0 chr1 75683914 75685006 -121510426 + MTA_Mm-int LTR MaLR 1 1098 0 3 1162 3538 28 0 0 chr1 75685006 75685402 -121510030 + MTA_Mm LTR MaLR 1 396 0 3 1162 571 243 59 0 chr1 75685994 75686130 -121509302 - B1F SINE Alu -5 144 1 3 1162 330 338 62 8 chr1 75686180 75686422 -121509010 - L1MC5 LINE L1 -68 7893 7639 3 1162 434 65 16 0 chr1 75686508 75686570 -121508862 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 3 1162 1466 131 95 39 chr1 75686800 75687085 -121508347 + RMER10B LTR ERVL 15 315 -83 3 1162 1001 53 0 30 chr1 75687082 75687217 -121508215 - B2_Mm2 SINE B2 -63 132 2 3 1162 516 263 0 0 chr1 75687817 75687912 -121507520 + ID_B1 SINE B4 118 212 -12 3 1162 618 191 0 0 chr1 75687927 75688058 -121507374 + (TA)n Simple_repeat Simple_repeat 1 131 0 3 1162 362 265 280 56 chr1 75688074 75688342 -121507090 + L1M3b LINE L1 20 347 -5934 3 1162 426 349 91 0 chr1 75688385 75688617 -121506815 + L1M3b LINE L1 417 669 -5612 3 1162 1317 241 145 33 chr1 75688663 75689173 -121506259 + L1MA7 LINE L1 5725 6291 0 3 1162 373 257 14 0 chr1 75689188 75689262 -121506170 + PB1D10 SINE Alu 35 109 -8 3 1162 200 167 21 0 chr1 75689275 75689323 -121506109 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1162 232 247 288 0 chr1 75690571 75690644 -121504788 + B4 SINE B4 179 272 -20 3 1162 1361 99 0 5 chr1 75691536 75691728 -121503704 + B2_Mm2 SINE B2 2 192 -3 3 1162 2044 120 14 66 chr1 75692754 75693101 -121502331 - ORR1A4 LTR MaLR 0 329 1 3 1162 207 0 0 0 chr1 75693618 75693641 -121501791 + (AGGGGG)n Simple_repeat Simple_repeat 2 24 0 3 1162 389 305 44 72 chr1 75694011 75694191 -121501241 + B2_Mm2 SINE B2 2 176 -19 3 1162 508 213 180 0 chr1 75694462 75694584 -121500848 - B1_Mur2 SINE Alu 0 149 6 3 1162 201 167 28 0 chr1 75694615 75694651 -121500781 + CT-rich Low_complexity Low_complexity 4 40 0 3 1162 540 209 0 0 chr1 75694659 75694750 -121500682 - PB1D10 SINE Alu -26 91 1 3 1162 8711 23 0 0 chr1 75695355 75696557 -121498875 - L1Md_A LINE L1 -1 6581 5380 3 1162 1688 253 65 8 chr1 75696984 75697371 -121498061 + MTD LTR MaLR 1 409 -10 3 1162 21 36 0 0 chr1 75697453 75697481 -121497951 + AT_rich Low_complexity Low_complexity 1 28 0 3 1162 315 228 115 42 chr1 75697482 75697578 -121497854 - L1ME4a LINE L1 -6 6118 6016 3 1162 468 35 0 0 chr1 75697689 75697747 -121497685 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 3 1162 1049 55 49 6 chr1 75697841 75698199 -121497233 + (TCTA)n Simple_repeat Simple_repeat 1 373 0 3 1162 1078 73 17 22 chr1 75698242 75698423 -121497009 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1162 885 198 97 15 chr1 75698596 75698791 -121496641 - B3 SINE B2 -5 211 1 3 1162 342 0 0 0 chr1 75699644 75699682 -121495750 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1162 555 248 0 9 chr1 75699703 75699817 -121495615 + PB1D10 SINE Alu 1 113 -4 3 1162 888 230 14 19 chr1 75699842 75700050 -121495382 + ID_B1 SINE B4 2 208 -16 3 1162 251 231 50 25 chr1 75700189 75700269 -121495163 - L1MA6 LINE L1 -57 6243 6162 3 1162 450 155 0 0 chr1 75700465 75700562 -121494870 + GA-rich Low_complexity Low_complexity 1 97 0 3 1162 306 328 108 61 chr1 75700564 75700843 -121494589 - B4A SINE B4 0 292 1 3 1162 225 237 0 0 chr1 75700976 75701035 -121494397 + (CAT)n Simple_repeat Simple_repeat 3 61 0 3 1162 255 351 37 37 chr1 75701893 75702029 -121493403 + MARNA DNA Mariner 287 422 -164 3 1162 797 282 46 81 chr1 75702121 75702406 -121493026 - B4 SINE B4 0 292 18 3 1162 480 358 14 0 chr1 75702424 75702437 -121492995 - RSINE1 SINE B4 -8 157 145 3 1162 462 49 0 0 chr1 75702437 75702498 -121492934 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1162 480 358 14 0 chr1 75702498 75702632 -121492800 - RSINE1 SINE B4 -21 144 9 3 1162 716 278 19 81 chr1 75702817 75703126 -121492306 + B4A SINE B4 3 292 0 3 1162 721 256 39 11 chr1 75703650 75703832 -121491600 + B3A SINE B2 1 187 -11 3 1162 759 22 0 0 chr1 75703877 75703966 -121491466 + (TTTCC)n Simple_repeat Simple_repeat 2 90 0 4 1162 584 62 0 12 chr1 75703966 75703983 -121491449 + (TC)n Simple_repeat Simple_repeat 2 18 0 4 1162 1023 54 0 0 chr1 75703983 75704113 -121491319 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 4 1162 584 62 0 12 chr1 75704113 75704177 -121491255 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1162 800 144 45 55 chr1 75704179 75704332 -121491100 - B1_Mur3 SINE Alu 0 149 2 4 1162 38598 31 1 1 chr1 75704345 75712067 -121483365 - L1Md_T LINE L1 0 6585 1 4 1162 452 332 34 54 chr1 75712226 75712465 -121482967 + B4A SINE B4 3 236 -56 4 1162 2323 89 68 11 chr1 75712476 75712668 -121482764 + RLTR20A1 LTR ERVK 1 208 -343 4 1162 414 0 0 0 chr1 75712668 75712714 -121482718 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1162 2323 89 68 11 chr1 75712714 75712874 -121482558 + RLTR20A1 LTR ERVK 209 373 -178 4 1162 309 51 0 0 chr1 75712890 75712929 -121482503 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1162 268 123 415 0 chr1 75712938 75713003 -121482429 + RLTR20A1 LTR ERVK 487 578 0 4 1162 210 306 16 16 chr1 75713004 75713067 -121482365 + RSINE1 SINE B4 100 162 -3 4 1162 278 289 44 129 chr1 75713547 75713735 -121481697 - MIR3 SINE MIR -31 177 7 4 1162 868 272 163 18 chr1 75714039 75714376 -121481056 + MLT1B LTR MaLR 3 388 -2 4 1162 180 371 93 19 chr1 75714672 75714779 -121480653 + L2b LINE L2 3261 3375 0 4 1162 248 308 103 0 chr1 75715045 75715061 -121480371 - B1_Mur2 SINE Alu -17 132 117 4 1162 450 0 0 0 chr1 75715061 75715111 -121480321 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1162 248 308 103 0 chr1 75715111 75715211 -121480221 - B1_Mur2 SINE Alu -33 116 5 4 1162 468 246 121 14 chr1 75715211 75715251 -121480181 - B4 SINE B4 -90 202 48 4 1162 1516 275 74 38 chr1 75715531 75715977 -121479455 + MLT1C LTR MaLR 1 462 -5 4 1162 397 298 94 6 chr1 75716052 75716211 -121479221 - MLT1J1 LTR MaLR -171 273 101 4 1162 289 250 50 40 chr1 75716487 75716587 -121478845 + MTEa LTR MaLR 269 369 -10 4 1162 185 283 0 21 chr1 75716679 75716726 -121478706 - MIRc SINE MIR -152 116 71 4 1162 279 0 0 0 chr1 75717462 75717493 -121477939 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1162 339 220 41 62 chr1 75717695 75717792 -121477640 - L2c LINE L2 -3 3384 3290 4 1162 278 267 10 29 chr1 75718205 75718309 -121477123 + CT-rich Low_complexity Low_complexity 2 103 0 4 1162 1241 253 31 17 chr1 75718661 75718951 -121476481 + MER58B DNA MER1_type 48 341 0 4 1162 466 221 0 0 chr1 75719296 75719382 -121476050 + B4 SINE B4 1 86 -206 4 1162 219 293 146 79 chr1 75719382 75719474 -121475958 + B3A SINE B2 1 190 -8 4 1162 337 308 22 37 chr1 75719702 75719837 -121475595 + MIRb SINE MIR 84 216 -52 4 1162 988 223 69 9 chr1 75720137 75720368 -121475064 + B4A SINE B4 2 246 -46 4 1162 441 0 0 0 chr1 75720369 75720418 -121475014 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1162 304 362 19 44 chr1 75720847 75721006 -121474426 + MIR SINE MIR 11 165 -97 4 1162 439 316 79 72 chr1 75721015 75721460 -121473972 + MLT1F2 LTR MaLR 24 537 -23 4 1162 248 292 0 0 chr1 75722331 75722396 -121473036 - ID4_ SINE ID -15 68 4 4 1162 1590 202 46 43 chr1 75722476 75722616 -121472816 - Lx6 LINE L1 -4 7456 7321 4 1162 738 0 0 0 chr1 75722616 75722698 -121472734 + (TTC)n Simple_repeat Simple_repeat 3 84 0 4 1162 486 133 71 0 chr1 75722698 75722796 -121472636 - L1_Mus3 LINE L1 -15 6623 6519 4 1162 1590 202 46 43 chr1 75722796 75722980 -121472452 - Lx6 LINE L1 -140 7320 7131 4 1162 1148 258 150 57 chr1 75723979 75724151 -121471281 - RMER13A LTR ERVK -106 754 586 4 1162 1094 80 0 0 chr1 75724151 75724288 -121471144 + B1_Mus1 SINE Alu 1 137 -11 4 1162 279 0 0 0 chr1 75724289 75724320 -121471112 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1162 1148 258 150 57 chr1 75724320 75724746 -121470686 - RMER13A LTR ERVK -275 585 98 4 1162 653 306 58 15 chr1 75726121 75726327 -121469105 - ID_B1 SINE B4 -8 216 2 4 1162 201 175 0 0 chr1 75726470 75726510 -121468922 + A-rich Low_complexity Low_complexity 1 40 0 4 1162 292 241 49 57 chr1 75727948 75728071 -121467361 - MLT1A1 LTR MaLR -19 389 268 4 1162 1614 242 71 82 chr1 75728772 75729165 -121466267 - RMER17C-int LTR ERVK -2532 706 290 4 1162 603 0 0 0 chr1 75729165 75729232 -121466200 + (CAG)n Simple_repeat Simple_repeat 3 69 0 4 1162 1614 242 71 82 chr1 75729232 75729446 -121465986 - RMER17C-int LTR ERVK -2949 289 106 4 1162 297 0 0 0 chr1 75729557 75729596 -121465836 + B1_Mus2 SINE Alu 4 42 -105 4 1162 687 25 0 0 chr1 75729599 75729680 -121465752 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 4 1162 1425 138 7 188 chr1 75729685 75730149 -121465283 - RMER17C LTR ERVK -30 380 1 4 1162 183 42 0 0 chr1 75730338 75730362 -121465070 + (C)n Simple_repeat Simple_repeat 1 24 0 4 1162 382 299 50 64 chr1 75734081 75734299 -121461133 - L1M5 LINE L1 -334 5790 5576 4 1162 180 0 0 0 chr1 75734584 75734604 -121460828 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1162 182 393 44 22 chr1 75734682 75734773 -121460659 + MIRm SINE MIR 34 126 -150 4 1162 223 288 50 0 chr1 75734876 75734956 -121460476 - MIR SINE MIR -88 174 91 4 1162 469 345 199 0 chr1 75734957 75735354 -121460078 - Arthur1 DNA Tip100 -3471 476 1 4 1162 349 265 156 13 chr1 75735793 75736066 -121459366 - Lx8 LINE L1 -3 7470 7137 4 1162 197 261 101 0 chr1 75736155 75736224 -121459208 + MIRc SINE MIR 18 93 -175 4 1162 587 250 125 0 chr1 75736584 75736760 -121458672 + B4 SINE B4 7 204 -88 4 1162 228 325 0 38 chr1 75736799 75736879 -121458553 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1162 229 349 87 20 chr1 75736993 75737189 -121458243 - L2b LINE L2 -2 3424 3216 4 1162 259 284 14 0 chr1 75737329 75737403 -121458029 - MTEa LTR MaLR -12 367 293 4 1162 360 0 0 0 chr1 75737519 75737559 -121457873 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1162 186 125 0 59 chr1 75738148 75738199 -121457233 + GA-rich Low_complexity Low_complexity 4 51 0 4 1162 324 0 0 0 chr1 75738486 75738522 -121456910 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1162 595 302 103 5 chr1 75739038 75739261 -121456171 - B4A SINE B4 -4 288 44 4 1162 399 269 193 6 chr1 75740482 75740658 -121454774 + MER2 DNA MER2_type 16 224 -121 4 1162 615 137 0 133 chr1 75740706 75740849 -121454583 - ORR1C1 LTR MaLR 0 378 255 4 1162 242 312 0 38 chr1 75740981 75741061 -121454371 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1162 604 250 125 0 chr1 75741100 75741276 -121454156 - B4 SINE B4 -88 204 7 4 1162 240 279 0 0 chr1 75742740 75742801 -121452631 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1162 356 260 0 37 chr1 75742865 75742890 -121452542 - ID_B1 SINE B4 -40 184 82 4 1162 382 219 12 0 chr1 75742890 75742972 -121452460 - B1_Mus2 SINE Alu -64 83 1 4 1162 946 31 0 37 chr1 75743019 75743141 -121452291 + B1_Mus1 SINE Alu 19 140 -8 4 1162 441 76 0 0 chr1 75743141 75743207 -121452225 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 4 1162 946 31 0 37 chr1 75743207 75743219 -121452213 + B1_Mus1 SINE Alu 141 148 0 4 1162 245 83 0 40 chr1 75743221 75743271 -121452161 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1162 876 314 28 3 chr1 75744161 75744445 -121450987 + B4A SINE B4 2 292 0 4 1162 632 209 6 0 chr1 75744454 75744631 -121450801 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 1162 189 0 0 0 chr1 75746559 75746580 -121448852 + (GGGGA)n Simple_repeat Simple_repeat 1 21 0 4 1162 459 35 0 0 chr1 75747563 75747620 -121447812 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1162 300 158 0 0 chr1 75747633 75747690 -121447742 + GA-rich Low_complexity Low_complexity 2 58 0 4 1162 2303 182 59 15 chr1 75747952 75748427 -121447005 + RLTR17 LTR ERVK 197 692 0 4 1162 1348 233 132 7 chr1 75748427 75748491 -121446941 + RMER3D-int LTR ERVK 1 77 -2765 4 1162 672 13 0 0 chr1 75748491 75748568 -121446864 + (TTTTA)n Simple_repeat Simple_repeat 4 80 0 4 1162 1348 223 149 37 chr1 75748568 75748968 -121446464 + RMER3D-int LTR ERVK 78 849 -1993 4 1162 7160 176 56 70 chr1 75749023 75750898 -121444534 + RMER3D-int LTR ERVK 470 2842 0 4 1162 1912 144 60 11 chr1 75750899 75751249 -121444183 + RLTR17 LTR ERVK 2 368 -324 4 1162 183 42 0 0 chr1 75751249 75751273 -121444159 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1162 201 108 0 0 chr1 75752404 75752441 -121442991 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1162 954 259 46 19 chr1 75753534 75753794 -121441638 - B4A SINE B4 -18 274 8 4 1162 1694 283 95 33 chr1 75753795 75754511 -121440921 - L1MA7 LINE L1 -32 6259 5490 4 1162 728 231 70 5 chr1 75754511 75754711 -121440721 - B3 SINE B2 -1 215 3 4 1162 1694 283 95 33 chr1 75754711 75754839 -121440593 - L1MA7 LINE L1 -802 5489 5363 4 1162 1125 97 0 0 chr1 75754867 75755012 -121440420 - B1_Mus2 SINE Alu -1 146 2 4 1162 1037 311 48 71 chr1 75755013 75755658 -121439774 - L1MA7 LINE L1 -836 5307 4678 4 1162 1124 249 39 64 chr1 75755697 75756104 -121439328 - L1MB4 LINE L1 -68 6112 5716 4 1162 293 251 181 11 chr1 75756580 75756742 -121438690 - MIRb SINE MIR -71 197 6 4 1162 5882 103 12 23 chr1 75756861 75757758 -121437674 - RMER17D LTR ERVK -2 887 1 4 1162 1944 177 14 14 chr1 75757801 75758168 -121437264 - ORR1D1 LTR MaLR -7 367 1 4 145 2353 236 181 36 chr1 75759485 75760158 -121435274 - RMER1A Other Other -259 771 1 4 1163 701 251 35 66 chr1 75760695 75760921 -121434511 - ID_B1 SINE B4 -1 223 5 4 1163 683 294 34 34 chr1 75761045 75761313 -121434119 + MLT1F LTR MaLR 9 276 -272 4 1163 191 286 63 0 chr1 75761636 75761699 -121433733 + MIR3 SINE MIR 110 176 -32 4 1163 376 319 90 7 chr1 75761739 75761884 -121433548 + MIRb SINE MIR 7 163 -105 4 1163 456 359 50 15 chr1 75762278 75762479 -121432953 - MLT2B1 LTR ERVL -64 456 249 4 1163 263 256 0 79 chr1 75762869 75762996 -121432436 - L1M LINE L1 -929 5371 5255 4 1163 1589 274 43 12 chr1 75762999 75763505 -121431927 - RMER5 LTR ERV1 0 534 13 4 1163 260 250 24 0 chr1 75763551 75763635 -121431797 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 1163 293 269 18 44 chr1 75763670 75763783 -121431649 - MLT1F LTR MaLR -273 275 166 4 1163 286 107 0 35 chr1 75765010 75765068 -121430364 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 5 1163 321 109 8 4 chr1 75765645 75765722 -121429710 - B4A SINE B4 0 292 215 5 1163 1322 246 111 8 chr1 75765781 75766179 -121429253 - Lx8 LINE L1 0 7473 7035 5 1163 259 281 37 0 chr1 75766184 75766266 -121429166 - Lx8 LINE L1 -406 7067 6983 5 1163 749 300 59 5 chr1 75766266 75766487 -121428945 - B4 SINE B4 -48 244 12 5 1163 726 209 0 57 chr1 75766947 75767104 -121428328 - B1_Mur3 SINE Alu 0 149 2 5 1163 769 267 73 47 chr1 75770349 75770624 -121424808 + B4A SINE B4 1 282 -10 5 1163 757 317 21 78 chr1 75770699 75771118 -121424314 - L1MB3 LINE L1 -183 6000 5592 5 1163 2265 54 0 0 chr1 75771118 75771394 -121424038 - L1Md_F2 LINE L1 -13 6569 6294 5 1163 757 317 21 78 chr1 75771394 75771450 -121423982 - L1MB3 LINE L1 -592 5591 5552 5 1163 428 278 190 69 chr1 75771513 75771760 -121423672 - B4A SINE B4 -14 278 2 5 1163 189 300 57 0 chr1 75772116 75772186 -121423246 - MIR SINE MIR -9 253 180 5 1163 340 274 8 25 chr1 75772486 75772606 -121422826 + MLT1A0 LTR MaLR 248 365 0 5 1163 880 220 4 36 chr1 75772805 75773007 -121422425 + B3A SINE B2 5 202 -14 5 1163 387 0 0 0 chr1 75773030 75773073 -121422359 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1163 450 0 0 0 chr1 75773073 75773123 -121422309 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1163 232 299 69 49 chr1 75773941 75774043 -121421389 + L2a LINE L2 3320 3423 -3 5 1163 196 294 45 49 chr1 75774514 75774640 -121420792 + MIRc SINE MIR 42 164 -98 5 1163 1181 159 21 19 chr1 75774676 75774994 -121420438 + RMER17C LTR ERVK 1 409 -1 5 1163 371 216 33 22 chr1 75775991 75776075 -121419357 - MTEa LTR MaLR -7 372 288 5 1163 1852 92 42 95 chr1 75776075 75776411 -121419021 + ORR1A3 LTR MaLR 1 318 -8 5 1163 815 251 74 0 chr1 75776430 75776633 -121418799 - MTEa LTR MaLR -142 237 20 5 1163 298 276 53 30 chr1 75776892 75777023 -121418409 + MLT1A1 LTR MaLR 271 404 -4 5 1163 205 232 0 67 chr1 75777260 75777320 -121418112 - MIR SINE MIR -113 149 94 5 1163 523 293 90 67 chr1 75778179 75778348 -121417084 - L1MC4 LINE L1 -1121 6921 6739 5 1163 1206 54 0 7 chr1 75778348 75778497 -121416935 - B1_Mus1 SINE Alu 0 148 1 5 1163 523 293 90 67 chr1 75778497 75778550 -121416882 - L1MC4 LINE L1 -1304 6738 6694 5 1163 338 324 135 0 chr1 75778558 75778669 -121416763 + ID_B1 SINE B4 86 211 -13 5 1163 186 43 0 0 chr1 75779269 75779292 -121416140 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 5 1163 348 148 0 0 chr1 75779292 75779353 -121416079 + (TCC)n Simple_repeat Simple_repeat 1 61 0 5 1163 336 290 70 0 chr1 75779353 75779453 -121415979 - PB1D10 SINE Alu -10 107 1 5 1163 1448 195 23 98 chr1 75780677 75781063 -121414369 - ORR1E LTR MaLR 0 359 3 5 1163 184 354 51 20 chr1 75781266 75781364 -121414068 - MIRb SINE MIR -131 137 37 5 1163 858 160 0 0 chr1 75781766 75781935 -121413497 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 5 1163 243 288 57 9 chr1 75782231 75782336 -121413096 + MTEa LTR MaLR 268 377 -2 5 1163 247 325 82 32 chr1 75783676 75783895 -121411537 + L2 LINE L2 2696 2925 -494 5 1163 875 186 124 11 chr1 75784150 75784335 -121411097 - B3 SINE B2 -10 206 1 5 1163 801 271 129 46 chr1 75784358 75784706 -121410726 - MTEa LTR MaLR 0 379 3 5 1163 256 331 88 29 chr1 75784946 75785117 -121410315 + B4 SINE B4 2 182 -110 5 1163 3169 111 31 31 chr1 75785192 75785733 -121409699 + RLTR20A LTR ERVK 1 541 0 5 1163 339 247 52 0 chr1 75786021 75786098 -121409334 - RSINE1 SINE B4 -31 134 54 5 1163 505 313 114 51 chr1 75786203 75786476 -121408956 + B4A SINE B4 2 291 -1 5 1163 245 286 0 0 chr1 75786493 75786549 -121408883 + (CATA)n Simple_repeat Simple_repeat 1 56 0 5 1163 888 228 95 62 chr1 75787005 75787375 -121408057 - MLT1C LTR MaLR -29 438 57 5 1163 3856 43 26 0 chr1 75787375 75787838 -121407594 - MT2C_Mm LTR ERVL 0 475 1 5 1163 792 276 9 27 chr1 75787870 75788090 -121407342 + B3 SINE B2 1 216 0 5 1163 865 316 24 27 chr1 75788095 75788388 -121407044 + B4A SINE B4 1 292 0 5 1163 471 210 10 10 chr1 75788489 75788590 -121406842 + ORR1E LTR MaLR 1 101 -258 5 1163 1153 176 9 5 chr1 75788590 75788807 -121406625 - URR1B DNA MER1_type 0 225 8 5 1163 707 263 79 29 chr1 75788797 75789061 -121406371 + ORR1E LTR MaLR 81 370 0 5 1163 2064 246 80 37 chr1 75789106 75789882 -121405550 - L1_Rod LINE L1 -931 5369 4522 5 1163 2933 151 16 38 chr1 75789882 75790455 -121404977 - RLTR20B2 LTR ERVK 0 560 1 5 1163 240 35 0 0 chr1 75791229 75791258 -121404174 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1163 483 265 104 60 chr1 75793039 75793288 -121402144 - LTR48B LTR ERV1 -18 626 367 5 1163 630 326 67 19 chr1 75793288 75793557 -121401875 + B4A SINE B4 1 282 -10 5 1163 192 234 0 0 chr1 75793639 75793686 -121401746 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1163 373 279 171 77 chr1 75793691 75793990 -121401442 - LTR48B LTR ERV1 -317 327 1 5 1163 205 143 17 35 chr1 75796584 75796642 -121398790 + (ATATG)n Simple_repeat Simple_repeat 2 58 0 5 1163 238 253 119 12 chr1 75796659 75796743 -121398689 + MTEa LTR MaLR 273 365 -14 5 1163 2260 128 40 21 chr1 75797020 75797394 -121398038 - ORR1C2 LTR MaLR 0 384 4 5 1163 27 0 0 0 chr1 75797937 75797964 -121397468 + AT_rich Low_complexity Low_complexity 1 27 0 5 1163 279 0 0 0 chr1 75797977 75798008 -121397424 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1163 321 200 17 0 chr1 75798066 75798126 -121397306 - B4 SINE B4 -231 61 1 5 1163 209 337 0 33 chr1 75799807 75799899 -121395533 + MIRb SINE MIR 93 181 -87 5 1163 299 308 23 0 chr1 75801379 75801509 -121393923 + T-rich Low_complexity Low_complexity 2 134 0 5 1163 562 102 71 12 chr1 75801669 75801838 -121393594 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1163 748 257 102 13 chr1 75802107 75802332 -121393100 - B4A SINE B4 0 292 48 5 1163 404 300 83 141 chr1 75802375 75802701 -121392731 + MER31A LTR ERV1 96 402 -83 5 1163 231 36 0 0 chr1 75802869 75802897 -121392535 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1163 746 290 110 26 chr1 75802940 75803404 -121392028 - L1MEg LINE L1 -4951 1133 631 5 1163 1187 68 0 7 chr1 75803443 75803591 -121391841 - B1_Mm SINE Alu 0 147 1 5 1163 945 150 134 10 chr1 75803626 75803638 -121391794 - L1_Mus3 LINE L1 -2 6652 6641 5 1163 491 0 17 0 chr1 75803638 75803697 -121391735 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 5 1163 1173 96 63 1 chr1 75803697 75803886 -121391546 - L1_Mus3 LINE L1 -14 6640 6426 5 1163 605 282 31 0 chr1 75803899 75804062 -121391370 - B3A SINE B2 -30 168 1 5 1163 267 292 168 20 chr1 75804063 75804259 -121391173 - L1MEg LINE L1 -5480 604 380 5 1163 295 253 21 32 chr1 75804301 75804395 -121391037 - MLT1A1 LTR MaLR -7 401 309 5 1163 330 314 47 103 chr1 75804786 75804999 -121390433 - L1MEg LINE L1 -5883 201 1 5 1163 378 0 0 0 chr1 75805059 75805101 -121390331 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 1163 1228 260 67 42 chr1 75805557 75805914 -121389518 - MTE2b LTR MaLR -13 366 1 5 1163 232 359 113 44 chr1 75806008 75806212 -121389220 - LTR85c LTR Gypsy? -128 695 478 5 1163 236 302 74 19 chr1 75806506 75806614 -121388818 - LTR85c LTR Gypsy? -709 114 1 5 1163 734 294 115 0 chr1 75806820 75807055 -121388377 - B4 SINE B4 -21 271 10 5 1163 243 0 0 0 chr1 75809485 75809512 -121385920 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1163 336 316 15 0 chr1 75810061 75810194 -121385238 - MER5A DNA MER1_type -5 184 50 5 1163 264 302 61 23 chr1 75810315 75810447 -121384985 + MER33 DNA MER1_type 45 181 -143 5 1163 929 265 28 0 chr1 75810526 75810737 -121384695 + ID_B1 SINE B4 3 219 -5 5 1163 663 284 18 6 chr1 75810995 75811158 -121384274 - B3A SINE B2 -27 171 7 5 1163 438 368 116 4 chr1 75811632 75811899 -121383533 + L3b LINE CR1 3 299 -183 5 1163 21 36 0 0 chr1 75812193 75812221 -121383211 + AT_rich Low_complexity Low_complexity 1 28 0 5 1163 186 224 0 0 chr1 75812229 75812278 -121383154 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1163 839 282 56 15 chr1 75812287 75812553 -121382879 - B4A SINE B4 -2 290 14 5 1163 326 315 0 43 chr1 75812657 75812773 -121382659 + MER63B DNA AcHobo 304 414 -22 5 1163 1460 74 16 0 chr1 75813041 75813230 -121382202 - B2_Mm2 SINE B2 -1 194 3 5 1163 275 346 83 6 chr1 75813402 75813559 -121381873 - MLT1N2 LTR MaLR -122 440 272 5 1163 518 86 12 0 chr1 75813622 75813703 -121381729 + (TCCCC)n Simple_repeat Simple_repeat 5 86 0 5 1163 813 167 73 28 chr1 75814582 75814761 -121380671 + B2_Mm2 SINE B2 1 187 -8 5 1163 269 284 0 13 chr1 75815395 75815470 -121379962 - MIRc SINE MIR -117 151 78 5 1163 512 227 25 25 chr1 75815626 75815748 -121379684 + Lx8 LINE L1 7193 7314 -159 5 1163 302 200 0 101 chr1 75815777 75815866 -121379566 + Lx8 LINE L1 7394 7473 0 5 1163 208 121 0 0 chr1 75816675 75816708 -121378724 - MIR SINE MIR -135 127 95 5 1163 1447 243 57 10 chr1 75816904 75817291 -121378141 + MTD LTR MaLR 1 405 -14 5 1163 522 0 0 0 chr1 75817634 75817692 -121377740 + (TATTG)n Simple_repeat Simple_repeat 4 61 0 5 1163 2147 146 10 97 chr1 75818731 75818806 -121376626 - ORR1B2 LTR MaLR 0 367 322 5 1163 1156 82 0 0 chr1 75818806 75818953 -121376479 - B1_Mm SINE Alu 0 147 1 5 1163 2147 146 10 97 chr1 75818953 75819278 -121376154 - ORR1B2 LTR MaLR -46 321 2 5 1163 462 136 0 0 chr1 75819730 75819811 -121375621 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1163 647 282 19 19 chr1 75820093 75820252 -121375180 - RSINE1 SINE B4 -4 161 3 5 1163 719 191 66 7 chr1 75820306 75820443 -121374989 - RSINE1 SINE B4 -19 146 2 5 1163 360 291 0 28 chr1 75820777 75820883 -121374549 - PB1D10 SINE Alu -1 116 14 5 1163 195 69 0 0 chr1 75820915 75820944 -121374488 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 1163 450 0 0 0 chr1 75821264 75821314 -121374118 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1163 299 256 221 18 chr1 75821566 75821729 -121373703 - B3A SINE B2 -1 197 2 6 1163 453 271 0 10 chr1 75822265 75822362 -121373070 + B1F SINE Alu 1 96 -53 6 1163 671 242 19 153 chr1 75823332 75823545 -121371887 + B4A SINE B4 44 228 -64 6 1163 297 347 68 58 chr1 75823545 75823738 -121371694 + B4 SINE B4 1 184 -108 6 1163 3041 44 42 5 chr1 75823738 75824124 -121371308 - MTB LTR MaLR 0 400 1 6 1163 297 293 29 26 chr1 75824124 75824216 -121371216 + B4 SINE B4 185 280 -12 6 1163 349 236 310 43 chr1 75824688 75824873 -121370559 + B4 SINE B4 5 239 -53 6 1163 222 354 21 0 chr1 75824896 75824992 -121370440 + (CATG)n Simple_repeat Simple_repeat 1 98 0 6 1163 23 0 0 0 chr1 75825012 75825035 -121370397 + AT_rich Low_complexity Low_complexity 1 23 0 6 1163 862 294 51 45 chr1 75825035 75825388 -121370044 - MLT2D LTR ERVL -56 358 4 6 1163 360 296 8 34 chr1 75826148 75826267 -121369165 - PB1D10 SINE Alu -1 116 1 6 1163 1178 265 46 20 chr1 75826646 75826996 -121368436 + ORR1E LTR MaLR 1 359 0 6 1163 409 289 38 16 chr1 75827263 75827426 -121368006 - MTEa LTR MaLR 0 379 205 6 1163 1126 300 151 45 chr1 75828297 75828912 -121366520 - MLT1E1A LTR MaLR 0 680 1 6 1163 251 278 61 20 chr1 75829063 75829162 -121366270 + MIR SINE MIR 96 198 -64 6 1163 282 289 0 0 chr1 75829565 75829641 -121365791 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1163 477 0 0 0 chr1 75830477 75830530 -121364902 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1163 30 59 0 0 chr1 75830876 75830927 -121364505 + AT_rich Low_complexity Low_complexity 1 51 0 6 1163 205 224 20 0 chr1 75831314 75831363 -121364069 - L2b LINE L2 -17 3358 3309 6 1163 32 43 0 0 chr1 75832305 75832351 -121363081 + AT_rich Low_complexity Low_complexity 1 46 0 6 1163 354 288 110 108 chr1 75832653 75833034 -121362398 - MLT1B LTR MaLR -5 385 4 6 1163 225 269 147 18 chr1 75833752 75833915 -121361517 - MIRc SINE MIR -59 209 26 6 1163 1220 71 11 0 chr1 75833976 75834436 -121360996 + (TCCA)n Simple_repeat Simple_repeat 1 465 0 6 1163 3249 56 2 2 chr1 75834614 75835010 -121360422 - MTA_Mm LTR MaLR 0 396 1 6 1163 253 257 61 52 chr1 75839552 75839625 -121355807 + MER103 DNA DNA 3 75 -91 6 1163 1034 145 171 0 chr1 75839625 75839818 -121355614 + URR1A DNA MER1_type 1 226 0 6 1163 253 257 61 52 chr1 75839818 75839859 -121355573 + MER103 DNA DNA 76 118 -48 6 1163 382 234 53 0 chr1 75842071 75842165 -121353267 + MER58A DNA MER1_type 20 118 -106 6 1163 324 0 0 0 chr1 75842235 75842271 -121353161 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 1163 252 0 0 0 chr1 75842683 75842711 -121352721 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1163 488 321 21 7 chr1 75842794 75842935 -121352497 - RSINE1 SINE B4 -15 150 8 6 1163 488 350 86 7 chr1 75842993 75843284 -121352148 - MLT2D LTR ERVL -2 412 99 6 1163 1027 137 179 0 chr1 75843343 75843533 -121351899 + URR1B DNA MER1_type 2 225 0 6 1163 364 268 79 14 chr1 75843548 75843674 -121351758 + B1F SINE Alu 1 136 -13 6 1163 279 54 0 0 chr1 75843674 75843711 -121351721 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 6 1163 364 268 79 14 chr1 75843711 75843724 -121351708 + B1F SINE Alu 137 149 0 6 1163 29 28 0 0 chr1 75843736 75843772 -121351660 + AT_rich Low_complexity Low_complexity 1 36 0 6 1163 302 227 0 146 chr1 75843984 75844087 -121351345 - B4A SINE B4 -4 288 201 6 1163 355 177 26 50 chr1 75844058 75844159 -121351273 - B1_Mur3 SINE Alu -2 147 49 6 1163 181 231 37 37 chr1 75846441 75846495 -121348937 + MER5B DNA MER1_type 108 161 -17 6 1163 1345 132 22 14 chr1 75846801 75847023 -121348409 - URR1B DNA MER1_type -1 224 1 6 1163 3084 73 5 5 chr1 75848378 75848778 -121346654 + MTB LTR MaLR 1 400 0 6 1163 649 189 23 8 chr1 75849057 75849190 -121346242 + RMER16 LTR ERVK 1 135 -398 6 1163 432 265 35 64 chr1 75849384 75849525 -121345907 - B1F SINE Alu -7 142 6 6 1163 267 169 123 0 chr1 75849816 75849881 -121345551 - ORR1E LTR MaLR 0 379 307 6 1163 369 0 0 0 chr1 75849903 75849944 -121345488 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1163 333 0 0 0 chr1 75849944 75849980 -121345452 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1163 217 328 131 39 chr1 75849980 75850110 -121345322 - RSINE1 SINE B4 -20 145 4 6 1163 1101 246 75 4 chr1 75850113 75850391 -121345041 - ORR1E LTR MaLR -61 298 1 6 1163 1235 168 39 16 chr1 75850413 75850667 -121344765 - RMER6B LTR ERVK 0 461 202 6 1163 12690 87 48 7 chr1 75850667 75851447 -121343985 - L1VL4 LINE L1 -9 3905 3124 6 1163 1620 0 0 0 chr1 75851447 75851627 -121343805 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1163 14582 59 22 4 chr1 75851627 75854004 -121341428 - L1VL4 LINE L1 -2743 3143 776 6 1163 1426 93 0 48 chr1 75854010 75854237 -121341195 - RMER6B LTR ERVK -245 216 1 6 1163 181 328 0 33 chr1 75854523 75854583 -121340849 + L2b LINE L2 3308 3365 -10 6 1163 372 133 0 0 chr1 75855439 75855499 -121339933 + (T)n Simple_repeat Simple_repeat 1 60 0 6 1163 435 68 0 0 chr1 75856067 75856126 -121339306 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1163 1269 179 128 100 chr1 75856179 75856539 -121338893 - ORR1D1 LTR MaLR -2 372 3 6 1163 315 0 0 0 chr1 75856541 75856576 -121338856 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1163 643 324 22 18 chr1 75856945 75857171 -121338261 + LTR55 LTR ERV 1 227 -321 6 1163 339 336 40 8 chr1 75858223 75858349 -121337083 + MamGypLTR3 LTR Gypsy 697 826 -13 6 1163 709 142 7 7 chr1 75859107 75859249 -121336183 + (TA)n Simple_repeat Simple_repeat 2 143 0 6 1163 603 261 76 5 chr1 75859729 75859914 -121335518 - B3A SINE B2 0 198 1 6 1163 1457 211 47 76 chr1 75859935 75860341 -121335091 - Lx5 LINE L1 -658 6392 5999 6 1163 1803 60 16 19 chr1 75860364 75860620 -121334812 - RLTR1B LTR ERV1 0 512 258 6 1163 589 285 135 32 chr1 75860757 75861127 -121334305 - MER89 LTR ERV1 -65 494 87 6 1163 802 185 16 29 chr1 75861146 75861344 -121334088 - B3A SINE B2 -3 192 3 6 1163 532 240 40 0 chr1 75861614 75861739 -121333693 - B1F1 SINE Alu -1 148 19 6 1163 258 105 0 0 chr1 75861869 75861907 -121333525 + (TCC)n Simple_repeat Simple_repeat 2 39 0 6 1163 357 261 104 104 chr1 75862271 75862493 -121332939 - B4 SINE B4 -70 222 1 6 1163 499 275 0 0 chr1 75862626 75862735 -121332697 - PB1D10 SINE Alu -8 109 1 6 1163 980 314 56 39 chr1 75862867 75863179 -121332253 - MER68 LTR ERVL -31 532 217 6 1163 405 0 0 0 chr1 75863179 75863224 -121332208 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1163 980 314 56 39 chr1 75863224 75863428 -121332004 - MER68 LTR ERVL -347 216 7 6 1163 453 246 89 47 chr1 75863754 75863989 -121331443 - L1MD LINE L1 -2849 3297 3053 6 1163 240 272 21 21 chr1 75864027 75864121 -121331311 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 6 1163 326 243 189 39 chr1 75864189 75864369 -121331063 - Lx7 LINE L1 0 7696 7490 6 1163 480 18 0 0 chr1 75864397 75864454 -121330978 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 6 1163 360 43 0 0 chr1 75864454 75864499 -121330933 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1163 1740 186 36 28 chr1 75864499 75864858 -121330574 - Lx7 LINE L1 -298 7398 7037 6 1163 362 237 0 31 chr1 75864982 75865078 -121330354 - PB1D10 SINE Alu -23 94 2 6 1163 281 327 0 27 chr1 75865078 75865089 -121330343 - ID_B1 SINE B4 -46 175 72 6 1163 330 269 73 15 chr1 75865130 75865266 -121330166 - RMER15 LTR ERVL 0 575 432 6 1163 270 233 28 28 chr1 75865686 75865792 -121329640 - L1M5 LINE L1 -297 5867 5762 6 1163 947 160 137 129 chr1 75865925 75866251 -121329181 - MT2A LTR ERVL -141 460 4 6 1163 648 266 128 4 chr1 75866263 75866512 -121328920 - L1M3 LINE L1 -1985 4155 3876 6 1163 203 61 0 29 chr1 75866992 75867026 -121328406 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 6 1163 822 282 25 125 chr1 75867215 75867535 -121327897 + B4 SINE B4 3 290 -2 6 1163 212 250 0 0 chr1 75867549 75867593 -121327839 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1163 540 30 0 0 chr1 75867799 75867865 -121327567 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1163 300 53 0 0 chr1 75868531 75868569 -121326863 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1163 3507 18 5 0 chr1 75868792 75869186 -121326246 - MTA_Mm LTR MaLR 0 396 1 6 1163 360 118 0 0 chr1 75870024 75870092 -121325340 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1163 1302 279 78 38 chr1 75871044 75871732 -121323700 + L1ME1 LINE L1 5376 6094 -70 6 1163 1335 234 114 15 chr1 75871781 75871907 -121323525 - Lx9 LINE L1 -15 7629 7495 6 1163 297 0 0 0 chr1 75871907 75871940 -121323492 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1163 1335 234 114 15 chr1 75871940 75872217 -121323215 - Lx9 LINE L1 -150 7494 7187 6 1163 566 219 61 0 chr1 75872218 75872332 -121323100 + Lx9 LINE L1 6441 6561 -1083 6 1163 1500 52 10 10 chr1 75872338 75872531 -121322901 - B2_Mm2 SINE B2 -1 194 2 6 1163 228 271 141 0 chr1 75872839 75872884 -121322548 + RMER30 DNA MER1_type 41 85 -117 6 1163 324 0 0 0 chr1 75872884 75872920 -121322512 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1163 228 271 141 0 chr1 75872920 75872959 -121322473 + RMER30 DNA MER1_type 86 136 -66 6 1163 430 233 97 8 chr1 75873008 75873142 -121322290 + B1F SINE Alu 1 146 -3 6 1163 479 189 0 0 chr1 75873142 75873216 -121322216 + ID4_ SINE ID 1 74 -9 6 1163 192 182 0 0 chr1 75874408 75874452 -121320980 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 6 1163 27 0 0 0 chr1 75874541 75874568 -121320864 + AT_rich Low_complexity Low_complexity 1 27 0 6 1163 563 308 12 25 chr1 75874568 75874731 -121320701 + RSINE1 SINE B4 3 163 -2 6 1163 410 298 24 24 chr1 75874784 75874908 -121320524 - RSINE1 SINE B4 0 165 42 6 1163 666 314 141 10 chr1 75875464 75875875 -121319557 - MLT1D LTR MaLR -19 486 22 6 1163 240 185 90 90 chr1 75876276 75876365 -121319067 - L1ME2z LINE L1 -274 6170 6082 7 1163 338 312 43 68 chr1 75876465 75876633 -121318799 - L1ME2z LINE L1 -459 5900 5734 7 1163 2601 174 9 185 chr1 75876633 75877374 -121318058 + RMER19C LTR ERVK 1 611 0 7 1163 338 310 41 69 chr1 75877374 75877446 -121317986 - L1ME2z LINE L1 -711 5733 5662 7 1163 201 108 0 0 chr1 75877450 75877487 -121317945 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1163 301 315 57 57 chr1 75877525 75877771 -121317661 - L1MEf LINE L1 -4281 1919 1674 7 1163 289 293 126 29 chr1 75877870 75878116 -121317316 + L1MEf LINE L1 1164 1433 -4767 7 1163 340 247 21 11 chr1 75878150 75878244 -121317188 - B3 SINE B2 0 216 122 7 1163 218 188 0 56 chr1 75878489 75878536 -121316896 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 7 1163 1860 122 196 9 chr1 75878536 75878588 -121316844 - ORR1B1 LTR MaLR 0 394 343 7 1163 297 0 0 0 chr1 75878588 75878621 -121316811 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1163 1860 122 196 9 chr1 75878621 75878899 -121316533 - ORR1B1 LTR MaLR -52 342 2 7 1163 218 188 0 56 chr1 75878899 75878941 -121316491 + (CACCAT)n Simple_repeat Simple_repeat 1 40 0 7 1163 1049 222 0 5 chr1 75879060 75879268 -121316164 - B3 SINE B2 -9 207 1 7 1163 288 271 35 0 chr1 75879535 75879620 -121315812 - MARNA DNA Mariner -9 577 490 7 1163 445 216 0 29 chr1 75880211 75880316 -121315116 + MLT1A1 LTR MaLR 291 392 -16 7 1163 183 248 19 9 chr1 75880352 75880458 -121314974 + (TA)n Simple_repeat Simple_repeat 2 108 0 7 1163 236 309 117 0 chr1 75880603 75880697 -121314735 + MER5B DNA MER1_type 68 172 -6 7 1163 273 355 126 6 chr1 75880902 75881069 -121314363 - Charlie8 DNA MER1_type -2142 286 100 7 1163 1517 268 112 6 chr1 75881073 75881598 -121313834 - L1MB3 LINE L1 -4 6179 5599 7 1163 306 0 0 0 chr1 75882015 75882049 -121313383 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1163 1277 143 34 72 chr1 75882882 75883175 -121312257 + RLTR28B LTR ERVL 1 282 -199 7 1163 1237 165 11 71 chr1 75883217 75883498 -121311934 + RLTR28B LTR ERVL 207 470 -11 7 1163 231 222 39 77 chr1 75883553 75883631 -121311801 + RLTR20D LTR ERVK 62 136 -432 7 1163 579 150 21 0 chr1 75885838 75885978 -121309454 + GA-rich Low_complexity Low_complexity 1 143 0 7 1163 410 273 64 14 chr1 75887905 75888046 -121307386 + MLT1H LTR MaLR 3 150 -399 7 1163 1672 200 42 18 chr1 75888065 75888447 -121306985 + MTD LTR MaLR 1 391 -28 7 1163 3201 31 39 13 chr1 75888598 75888984 -121306448 - MTA_Mm LTR MaLR 0 396 1 7 1163 1665 131 262 9 chr1 75889037 75889354 -121306078 + RMER10B LTR ERVL 2 398 0 7 1163 4224 78 36 29 chr1 75889805 75890388 -121305044 + LTRIS_Mus LTR ERV1 1 587 0 7 145 1976 270 62 7 chr1 75890630 75891182 -121304250 - Lx8 LINE L1 -3 7470 6889 7 1164 590 254 97 31 chr1 75891296 75891523 -121303909 + L1ME2 LINE L1 5705 5946 -218 7 1164 643 268 17 23 chr1 75891640 75891792 -121303640 + ORR1D2 LTR MaLR 6 156 -214 7 1164 2583 186 19 23 chr1 75891792 75891836 -121303596 - MT2A LTR ERVL 0 533 493 7 1164 449 71 14 0 chr1 75891836 75891906 -121303526 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 7 1164 2583 186 19 23 chr1 75891906 75892315 -121303117 - MT2A LTR ERVL -41 492 81 7 1164 1958 214 45 2 chr1 75892315 75892717 -121302715 - MTD LTR MaLR 0 419 1 7 1164 2583 186 19 23 chr1 75892717 75892794 -121302638 - MT2A LTR ERVL -453 80 4 7 1164 647 226 60 25 chr1 75892794 75892993 -121302439 + ORR1D2 LTR MaLR 151 356 -14 7 1164 571 274 127 11 chr1 75893007 75893283 -121302149 - MER58B DNA MER1_type -33 308 1 7 1164 256 229 106 76 chr1 75893783 75893915 -121301517 + MLT1A0 LTR MaLR 1 136 -229 7 1164 227 133 22 0 chr1 75894027 75894072 -121301360 + MLT1A1 LTR MaLR 347 392 -16 7 1164 233 330 40 0 chr1 75894110 75894210 -121301222 + L2b LINE L2 3269 3372 -3 7 1164 342 0 0 0 chr1 75894244 75894282 -121301150 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1164 329 0 24 0 chr1 75894282 75894322 -121301110 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1164 434 326 32 59 chr1 75894383 75894569 -121300863 - B4A SINE B4 -111 181 1 7 1164 717 53 0 0 chr1 75894941 75895035 -121300397 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 1164 769 253 17 0 chr1 75895178 75895356 -121300076 - ID_B1 SINE B4 -7 217 37 7 1164 669 223 22 67 chr1 75895374 75895552 -121299880 + MER58B DNA MER1_type 171 340 -1 7 1164 419 187 36 87 chr1 75895944 75896072 -121299360 + L1MA5 LINE L1 5833 5960 -340 7 1164 962 192 31 67 chr1 75896072 75896295 -121299137 + B3 SINE B2 2 216 0 7 1164 419 164 33 91 chr1 75896295 75896331 -121299101 + L1MA5 LINE L1 5957 5991 -309 7 1164 736 161 30 30 chr1 75896397 75896531 -121298901 + B1_Mus1 SINE Alu 6 139 -9 7 1164 180 0 0 0 chr1 75896708 75896728 -121298704 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1164 288 279 0 0 chr1 75897030 75897191 -121298241 + (TG)n Simple_repeat Simple_repeat 2 162 0 7 1164 625 262 30 24 chr1 75897276 75897444 -121297988 - B4A SINE B4 -123 169 1 7 1164 565 258 24 0 chr1 75897480 75897604 -121297828 + RSINE1 SINE B4 2 128 -37 7 1164 31 0 0 0 chr1 75898115 75898146 -121297286 + AT_rich Low_complexity Low_complexity 1 31 0 7 1164 364 208 35 86 chr1 75899799 75899915 -121295517 - MLT1A1 LTR MaLR -7 401 292 7 1164 450 0 0 0 chr1 75899931 75899981 -121295451 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 7 1164 180 0 0 0 chr1 75899981 75900001 -121295431 + (CCA)n Simple_repeat Simple_repeat 2 21 0 7 1164 290 200 42 28 chr1 75900384 75900456 -121294976 - RMER20B LTR ERVK -27 600 528 7 1164 924 265 187 31 chr1 75900461 75900975 -121294457 - RMER20B LTR ERVK -29 598 5 7 1164 1429 116 190 45 chr1 75901159 75901448 -121293984 + Lx2 LINE L1 6667 6997 0 7 1164 299 290 0 0 chr1 75901980 75902049 -121293383 + B3A SINE B2 2 70 -128 7 1164 303 49 0 0 chr1 75902095 75902136 -121293296 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 7 1164 374 351 83 21 chr1 75903518 75903710 -121291722 - MLT1I LTR MaLR -13 398 195 7 1164 970 332 52 8 chr1 75903883 75904266 -121291166 + MLT1A1 LTR MaLR 7 406 -2 7 1164 1333 253 62 34 chr1 75904712 75905096 -121290336 + Lx8 LINE L1 7039 7433 -40 7 1164 267 410 30 0 chr1 75905099 75905233 -121290199 - MER91A DNA Tip100 -40 156 19 7 1164 839 241 33 41 chr1 75906035 75906277 -121289155 + MLT1D LTR MaLR 1 240 -265 7 1164 717 303 54 0 chr1 75906566 75906787 -121288645 + MER58B DNA MER1_type 1 233 -108 7 1164 2504 238 60 76 chr1 75906971 75907463 -121287969 - RMER17B LTR ERVK -66 892 407 7 1164 308 24 0 24 chr1 75907463 75907505 -121287927 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1164 2504 238 60 76 chr1 75907505 75907918 -121287514 - RMER17B LTR ERVK -552 406 2 7 1164 216 0 0 0 chr1 75909423 75909447 -121285985 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1164 765 324 53 6 chr1 75909815 75910153 -121285279 + LTR40c LTR ERVL 69 422 -43 7 1164 1695 168 109 46 chr1 75910192 75910605 -121284827 - RMER10A LTR ERVL -2 440 2 7 1164 465 274 0 8 chr1 75911014 75911139 -121284293 - RSINE1 SINE B4 -29 136 13 7 1164 195 42 0 0 chr1 75911295 75911319 -121284113 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1164 294 0 65 0 chr1 75911500 75911546 -121283886 + (CAA)n Simple_repeat Simple_repeat 3 51 0 7 1164 378 0 0 0 chr1 75911825 75911867 -121283565 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1164 204 350 12 12 chr1 75912031 75912112 -121283320 - MIR SINE MIR -87 121 41 7 1164 638 306 128 31 chr1 75912306 75912664 -121282768 + MLT1C LTR MaLR 1 393 -74 7 1164 313 346 42 33 chr1 75913900 75914112 -121281320 + MLT1J LTR MaLR 105 318 -194 7 1164 733 162 14 14 chr1 75915254 75915398 -121280034 - URR1A DNA MER1_type -4 222 79 7 1164 230 266 0 45 chr1 75915717 75915784 -121279648 - Lx8 LINE L1 -257 7216 7153 7 1164 348 351 7 7 chr1 75915825 75915960 -121279472 - Lx8 LINE L1 -300 7173 7039 7 1164 567 0 0 0 chr1 75916099 75916162 -121279270 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 7 1164 1133 72 0 0 chr1 75916162 75916301 -121279131 - B1_Mus1 SINE Alu -9 139 1 7 1164 1350 174 0 0 chr1 75916322 75916546 -121278886 - URR1A DNA MER1_type 0 226 3 7 1164 352 298 35 31 chr1 75916580 75916732 -121278700 + MIRc SINE MIR 1 148 -120 7 1164 824 188 0 38 chr1 75917677 75917968 -121277464 + (TCCA)n Simple_repeat Simple_repeat 1 279 0 7 1164 225 266 30 69 chr1 75918564 75918665 -121276767 - MIRb SINE MIR -70 198 102 7 1164 270 230 78 33 chr1 75919391 75919481 -121275951 - MIR SINE MIR -141 121 28 7 1164 464 172 0 65 chr1 75919584 75919677 -121275755 + B1_Mus1 SINE Alu 1 87 -61 7 1164 3860 146 100 72 chr1 75919678 75920537 -121274895 - RMER19B LTR ERVK -19 883 1 7 1164 247 222 0 0 chr1 75920537 75920579 -121274853 + B1_Mus2 SINE Alu 87 128 -19 7 1164 342 0 0 0 chr1 75920599 75920637 -121274795 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1164 204 40 0 0 chr1 75920660 75920685 -121274747 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 1164 239 269 0 9 chr1 75920691 75920796 -121274636 + A-rich Low_complexity Low_complexity 3 106 0 7 1164 222 37 0 0 chr1 75920800 75920827 -121274605 + (CAAAC)n Simple_repeat Simple_repeat 5 31 0 7 1164 386 305 53 35 chr1 75921495 75921665 -121273767 + L2a LINE L2 2729 2901 -518 7 1164 302 365 119 22 chr1 75921862 75922173 -121273259 + L2a LINE L2 2916 3256 -170 7 1164 530 357 75 39 chr1 75923738 75924351 -121271081 + L1ME3 LINE L1 5416 6050 -112 7 1164 1395 133 0 47 chr1 75924827 75925063 -121270369 + URR1B DNA MER1_type 1 225 0 7 1164 183 80 0 0 chr1 75925236 75925261 -121270171 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 7 1164 4047 22 0 0 chr1 75925262 75925718 -121269714 - L1_Mm LINE L1 -139 5744 5289 7 1164 300 23 0 0 chr1 75925718 75925762 -121269670 - L1Md_T LINE L1 0 6582 6539 7 1164 696 157 3 42 chr1 75925954 75926239 -121269193 + CT-rich Low_complexity Low_complexity 1 273 0 7 1164 646 276 82 26 chr1 75926239 75926470 -121268962 - B4A SINE B4 -46 246 3 7 1164 398 164 17 0 chr1 75926807 75926923 -121268509 + (CAGA)n Simple_repeat Simple_repeat 4 121 0 8 1164 441 0 0 0 chr1 75927914 75927963 -121267469 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1164 387 0 0 0 chr1 75928006 75928049 -121267383 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1164 349 260 0 55 chr1 75929611 75929721 -121265711 + MER3 DNA MER1_type 90 193 -16 8 1164 371 216 29 29 chr1 75929742 75929847 -121265585 - MLT1A1 LTR MaLR -14 394 290 8 1164 235 284 15 15 chr1 75930272 75930340 -121265092 - L2c LINE L2 -49 3338 3271 8 1164 405 0 0 0 chr1 75931079 75931124 -121264308 + (TTA)n Simple_repeat Simple_repeat 3 47 0 8 1164 313 358 52 6 chr1 75932069 75932243 -121263189 + LTR33 LTR ERVL 39 220 -295 8 1164 216 0 0 0 chr1 75932904 75932928 -121262504 + (CAG)n Simple_repeat Simple_repeat 2 25 0 8 1164 566 256 14 14 chr1 75932955 75933094 -121262338 + B3A SINE B2 1 139 -59 8 1164 209 390 0 0 chr1 75934275 75934370 -121261062 + MIR SINE MIR 65 159 -103 8 1164 688 289 172 0 chr1 75934439 75934747 -121260685 - MLT1A0 LTR MaLR -3 362 2 8 1164 331 330 0 0 chr1 75934828 75934937 -121260495 + (TATG)n Simple_repeat Simple_repeat 3 111 0 8 1164 234 266 19 12 chr1 75934961 75935121 -121260311 + (TATG)n Simple_repeat Simple_repeat 2 162 0 8 1164 349 286 37 6 chr1 75935133 75935295 -121260137 + (TATG)n Simple_repeat Simple_repeat 1 167 0 8 1164 237 237 19 31 chr1 75935296 75935457 -121259975 + (TATATG)n Simple_repeat Simple_repeat 1 159 0 8 1164 258 160 0 0 chr1 75936471 75936521 -121258911 + (CACG)n Simple_repeat Simple_repeat 4 53 0 8 1164 866 238 28 9 chr1 75938968 75939180 -121256252 - B3 SINE B2 0 216 1 8 1164 377 301 113 10 chr1 75939501 75939696 -121255736 + MLT1H2 LTR MaLR 275 489 0 8 1164 673 318 27 31 chr1 75939729 75939953 -121255479 + MER58A DNA MER1_type 1 223 -1 8 1164 2072 195 80 12 chr1 75940023 75940536 -121254896 - RMER15 LTR ERVL 0 575 28 8 1164 228 192 154 0 chr1 75940566 75940618 -121254814 - RMER15 LTR ERVL -515 60 1 8 1164 225 0 0 0 chr1 75941103 75941128 -121254304 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1164 783 218 36 87 chr1 75941362 75941526 -121253906 + B3A SINE B2 1 164 -34 8 1164 279 0 0 0 chr1 75941526 75941557 -121253875 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1164 581 218 36 87 chr1 75941557 75941588 -121253844 + B2_Mm2 SINE B2 158 186 -9 8 1164 187 314 100 0 chr1 75941982 75942052 -121253380 + MIR SINE MIR 112 188 -74 8 1164 388 296 22 90 chr1 75942247 75942425 -121253007 - B4A SINE B4 -126 166 1 8 1164 192 294 69 23 chr1 75942685 75942772 -121252660 - L2a LINE L2 -1 3425 3335 8 1164 646 312 68 29 chr1 75943077 75943387 -121252045 + MER73 LTR ERVL 1 322 -322 8 1164 232 196 22 0 chr1 75943386 75943432 -121252000 - B4 SINE B4 -8 284 238 8 1164 876 243 54 108 chr1 75943475 75943770 -121251662 - B4 SINE B4 -12 280 2 8 1164 281 118 0 19 chr1 75943820 75943872 -121251560 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 8 1164 198 0 0 0 chr1 75943935 75943957 -121251475 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1164 405 0 0 0 chr1 75943957 75944001 -121251431 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1164 552 272 84 60 chr1 75944097 75944312 -121251120 - MER58A DNA MER1_type -4 220 1 8 1164 765 107 0 0 chr1 75945401 75945523 -121249909 + (CAT)n Simple_repeat Simple_repeat 2 123 0 8 1164 6994 200 79 15 chr1 75945847 75948244 -121247188 - Lx6 LINE L1 -6 7454 4888 8 1164 443 234 75 68 chr1 75948265 75948412 -121247020 - Lx6 LINE L1 -26 7434 7287 8 1164 557 255 19 56 chr1 75948425 75948587 -121246845 - Lx5 LINE L1 -365 6685 6530 8 1164 5742 152 43 4 chr1 75948577 75949621 -121245811 - Lx6 LINE L1 -1017 4863 3779 8 1164 333 0 0 0 chr1 75950042 75950079 -121245353 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1164 402 21 0 0 chr1 75950424 75950471 -121244961 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1164 884 320 18 14 chr1 75950473 75950752 -121244680 - B4A SINE B4 -4 288 9 8 1164 295 297 33 11 chr1 75950856 75950969 -121244463 + Charlie1a DNA MER1_type 2 122 -1333 8 1164 264 262 12 48 chr1 75950983 75951067 -121244365 - MLT1A1 LTR MaLR -30 378 298 8 1164 2340 270 140 36 chr1 75951224 75952320 -121243112 + Charlie1a DNA MER1_type 154 1363 -92 8 1164 295 282 168 119 chr1 75952328 75952498 -121242934 + RSINE1 SINE B4 66 292 0 8 1164 750 254 38 90 chr1 75952533 75952745 -121242687 - B3 SINE B2 -15 201 1 8 1164 316 338 46 50 chr1 75952864 75953082 -121242350 - Charlie8 DNA MER1_type -2185 243 27 8 1164 234 91 0 0 chr1 75953503 75953536 -121241896 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 8 1164 570 243 160 21 chr1 75954274 75954473 -121240959 - B3A SINE B2 -11 205 1 8 1164 520 331 59 7 chr1 75954846 75954863 -121240569 - RSINE1 SINE B4 -3 162 146 8 1164 741 125 0 0 chr1 75954863 75954983 -121240449 + (TG)n Simple_repeat Simple_repeat 2 121 0 8 1164 520 331 59 7 chr1 75954983 75955117 -121240315 - RSINE1 SINE B4 -20 145 4 8 1164 645 248 97 5 chr1 75955214 75955421 -121240011 - Arthur1 DNA Tip100 -284 3663 3438 8 1164 2006 297 89 15 chr1 75955438 75956121 -121239311 - Arthur1 DNA Tip100 -3162 785 52 8 1164 23 33 0 0 chr1 75956539 75956569 -121238863 + AT_rich Low_complexity Low_complexity 1 30 0 8 1164 443 339 10 0 chr1 75956723 75956918 -121238514 + L1M2 LINE L1 4062 4258 -1885 8 1164 574 143 7 67 chr1 75957034 75957169 -121238263 - Lx9 LINE L1 -7 7637 7511 8 1164 969 251 64 41 chr1 75957169 75957401 -121238031 - ORR1C2 LTR MaLR 0 384 1 8 1164 748 164 8 38 chr1 75957401 75957534 -121237898 - MT2A LTR ERVL -404 129 1 8 1164 2663 183 76 23 chr1 75957543 75957868 -121237564 - Lx9 LINE L1 -128 7516 7187 8 1164 1760 191 94 26 chr1 75957868 75958218 -121237214 - ORR1D1 LTR MaLR 0 374 1 8 1164 2663 183 76 23 chr1 75958218 75958457 -121236975 - Lx9 LINE L1 -458 7186 6922 8 1164 3068 202 81 36 chr1 75958455 75958584 -121236848 + Lx9 LINE L1 6160 6321 -1323 8 1164 434 120 13 0 chr1 75958584 75958659 -121236773 + (CATA)n Simple_repeat Simple_repeat 3 78 0 8 1164 477 0 0 0 chr1 75958668 75958721 -121236711 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 8 1164 3068 202 81 36 chr1 75958721 75959299 -121236133 + Lx9 LINE L1 6334 6908 -736 8 1164 936 252 49 35 chr1 75959311 75959537 -121235895 - B4 SINE B4 -63 229 1 8 1164 354 348 62 64 chr1 75959962 75960021 -121235411 + MIR SINE MIR 43 103 -165 8 1164 1729 179 131 3 chr1 75960021 75960358 -121235074 + ORR1C2 LTR MaLR 5 384 0 8 1164 354 327 28 62 chr1 75960358 75960506 -121234926 + MIR SINE MIR 100 245 -17 8 1164 234 0 0 0 chr1 75960750 75960776 -121234656 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1164 245 283 153 55 chr1 75962541 75962724 -121232708 - L2a LINE L2 -1 3425 3225 8 1164 360 0 0 0 chr1 75963264 75963304 -121232128 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1164 535 280 68 0 chr1 75963304 75963436 -121231996 - B1F SINE Alu -8 141 1 8 1164 270 0 0 0 chr1 75964208 75964238 -121231194 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 8 1164 1982 157 3 63 chr1 75964254 75964602 -121230830 - ORR1A2 LTR MaLR 0 327 1 8 1164 6997 113 14 43 chr1 75964602 75965521 -121229911 - ORR1A2-int LTR MaLR 0 1963 1042 8 1164 258 32 0 0 chr1 75965521 75965552 -121229880 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1164 6997 113 14 43 chr1 75965552 75965583 -121229849 - ORR1A3-int LTR MaLR -922 1041 1041 8 1164 1093 37 7 0 chr1 75965583 75965719 -121229713 - L1Md_F2 LINE L1 -12 6570 6434 8 1164 6997 138 16 39 chr1 75965719 75965902 -121229530 - ORR1A2-int LTR MaLR -922 1041 880 8 1164 8275 39 7 3 chr1 75966011 75967518 -121227914 - L1Md_F2 LINE L1 -3 6579 5069 8 1164 8113 66 1 0 chr1 75967515 75968536 -121226896 + L1Md_F2 LINE L1 4068 5089 -794 8 1164 553 230 53 3 chr1 75968538 75968677 -121226755 - B1_Mus2 SINE Alu 0 149 3 8 1164 666 169 0 110 chr1 75968677 75968796 -121226636 - MT2B LTR ERVL -342 259 157 8 1164 3373 144 9 21 chr1 75968789 75969355 -121226077 - ORR1A2-int LTR MaLR -1403 560 2 8 1164 2063 147 25 12 chr1 75969356 75969679 -121225753 - ORR1A2 LTR MaLR 0 327 1 8 1164 230 348 133 19 chr1 75972383 75972594 -121222838 + MIRc SINE MIR 17 251 -17 8 1164 323 348 65 84 chr1 75973455 75973686 -121221746 - MLT1L LTR MaLR -292 318 88 8 1164 324 0 0 0 chr1 75973686 75973722 -121221710 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8 1164 323 348 65 84 chr1 75973722 75973798 -121221634 - MLT1L LTR MaLR -523 87 17 8 1164 4223 101 18 3 chr1 75973968 75974576 -121220856 - L1_Mur2 LINE L1 -1090 4787 4171 8 1164 717 95 9 0 chr1 75974580 75974685 -121220747 + Lx2 LINE L1 6891 6996 -1 8 1164 297 75 0 0 chr1 75974688 75974728 -121220704 + (TAA)n Simple_repeat Simple_repeat 3 42 0 8 1164 288 0 0 0 chr1 75975874 75975906 -121219526 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 1164 512 325 6 35 chr1 75976106 75976275 -121219157 - RSINE1 SINE B4 0 165 2 8 1164 1797 211 38 8 chr1 75976369 75976736 -121218696 + MTD LTR MaLR 34 411 -8 8 1164 709 67 149 8 chr1 75977442 75977563 -121217869 + L1Md_F2 LINE L1 6445 6582 0 8 1164 414 0 0 0 chr1 75978286 75978332 -121217100 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1164 1194 107 0 0 chr1 75979270 75979447 -121215985 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 8 1164 225 83 0 0 chr1 75981355 75981391 -121214041 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 8 1164 620 238 80 68 chr1 75981402 75981564 -121213868 - RSINE1 SINE B4 0 165 2 8 1164 733 279 20 26 chr1 75981656 75981851 -121213581 - B3A SINE B2 -3 195 2 8 1164 406 283 124 96 chr1 75982967 75983362 -121212070 + MLT1A1 LTR MaLR 3 408 0 8 1164 209 191 0 0 chr1 75983648 75983690 -121211742 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1164 287 195 94 179 chr1 75983957 75983995 -121211437 + MER58B DNA MER1_type 80 109 -232 8 1164 977 227 9 38 chr1 75983995 75984206 -121211226 + B3 SINE B2 2 206 -10 8 1164 287 195 94 179 chr1 75984206 75984379 -121211053 + MER58B DNA MER1_type 110 273 -68 8 1164 235 366 36 6 chr1 75984615 75984780 -121210652 + L1MEd LINE L1 2 171 -5948 8 1164 399 375 132 25 chr1 75984886 75985483 -121209949 + L1MEd LINE L1 268 928 -5191 8 1164 276 188 0 0 chr1 75985957 75986026 -121209406 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1164 470 318 71 154 chr1 75986182 75986364 -121209068 + MLT1A LTR MaLR 140 332 -42 8 1164 255 261 154 0 chr1 75986364 75986429 -121209003 - ID4_ SINE ID -7 76 2 8 1164 470 318 71 154 chr1 75986429 75986499 -121208933 + MLT1A LTR MaLR 333 371 -3 8 1164 1880 163 68 11 chr1 75986646 75987000 -121208432 - ORR1D1 LTR MaLR 0 374 1 8 1164 259 275 128 32 chr1 75987502 75987596 -121207836 - PB1D10 SINE Alu -6 111 9 8 1164 459 0 0 0 chr1 75987932 75987983 -121207449 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1164 267 362 22 88 chr1 75988296 75988465 -121206967 - MIR3 SINE MIR -97 179 19 9 1164 780 241 18 151 chr1 75988514 75988793 -121206639 + MTE2a LTR MaLR 1 242 -137 9 1164 610 275 29 0 chr1 75989012 75989150 -121206282 + MTE2a LTR MaLR 238 379 0 9 1164 205 136 43 43 chr1 75989210 75989256 -121206176 + (CATA)n Simple_repeat Simple_repeat 4 49 0 9 1164 312 27 0 0 chr1 75989256 75989293 -121206139 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1164 248 0 31 0 chr1 75989727 75989759 -121205673 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 9 1164 351 0 0 0 chr1 75990120 75990159 -121205273 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1164 1348 170 9 9 chr1 75990814 75991039 -121204393 - URR1B DNA MER1_type 0 225 1 9 1164 258 300 119 10 chr1 75991402 75991503 -121203929 + LTR86A2 LTR ERVL 34 145 -363 9 1164 441 236 73 0 chr1 75991693 75991803 -121203629 - PB1D9 SINE Alu -2 118 1 9 1164 260 338 0 0 chr1 75991896 75991970 -121203462 + ID4_ SINE ID 1 74 -9 9 1164 534 326 102 7 chr1 75992119 75992403 -121203029 - L1MC4 LINE L1 0 8042 7732 9 1164 218 356 0 0 chr1 75992463 75992522 -121202910 + B4A SINE B4 83 141 -151 9 1164 630 0 0 0 chr1 75992865 75992935 -121202497 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 9 1164 251 177 0 16 chr1 75992944 75993007 -121202425 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1164 405 86 0 0 chr1 75993014 75993072 -121202360 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1164 401 331 60 16 chr1 75993079 75993263 -121202169 - B4A SINE B4 -30 262 71 9 1164 218 167 28 0 chr1 75993253 75993289 -121202143 - RSINE1 SINE B4 -125 40 4 9 1164 378 248 48 108 chr1 75994096 75994122 -121201310 + B4A SINE B4 76 217 -75 9 1164 944 53 15 22 chr1 75994122 75994245 -121201187 + B1_Mus2 SINE Alu 14 137 -10 9 1164 597 14 0 0 chr1 75994245 75994315 -121201117 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 9 1164 201 74 0 0 chr1 75994364 75994391 -121201041 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 9 1164 310 206 32 0 chr1 75994402 75994465 -121200967 - ID4 SINE ID -14 69 5 9 1164 426 212 25 0 chr1 75995419 75995499 -121199933 + ID4 SINE ID 2 83 0 9 1164 442 235 0 0 chr1 75995706 75995787 -121199645 + RSINE1 SINE B4 3 83 -82 9 1164 186 43 0 0 chr1 75995839 75995862 -121199570 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1164 464 303 72 11 chr1 75996169 75996349 -121199083 - MIR SINE MIR -66 196 6 9 1164 495 0 0 0 chr1 75997655 75997710 -121197722 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1164 227 294 45 73 chr1 75998233 75998343 -121197089 + MTC LTR MaLR 182 288 -133 9 1164 24 32 0 0 chr1 75998545 75998576 -121196856 + AT_rich Low_complexity Low_complexity 1 31 0 9 1164 558 229 37 0 chr1 75998616 75998725 -121196707 - B3 SINE B2 -103 113 1 9 1164 560 291 8 0 chr1 75998767 75998884 -121196548 + B1F1 SINE Alu 1 118 -31 9 1164 188 35 35 0 chr1 75998886 75998915 -121196517 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1164 2574 114 153 0 chr1 75999489 75999901 -121195531 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1164 375 115 9 72 chr1 75999902 76000000 -121195432 + RLTR10-int LTR ERVK 3 92 -6389 9 1164 781 88 0 12 chr1 76000000 76000113 -121195319 + IAPEz-int LTR ERVK 93 195 -6286 1 1164 228 250 0 0 chr1 76000113 76000157 -121195275 + RLTR27 LTR ERVK 232 275 -34 2 1164 283 83 0 0 chr1 76000157 76000193 -121195239 + IAPEz-int LTR ERVK 145 180 -7401 1 1164 236 244 0 0 chr1 76000193 76000238 -121195194 + RLTR27 LTR ERVK 231 275 -34 3 1164 3577 60 1 17 chr1 76000238 76000817 -121194615 + IAPEz-int LTR ERVK 168 662 -5819 1 1164 2702 73 0 3 chr1 76000817 76001160 -121194272 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1164 6797 43 3 25 chr1 76001153 76002002 -121193430 + IAPEz-int LTR ERVK 5651 6481 0 1 1164 2415 111 147 0 chr1 76002002 76002416 -121193016 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1164 7123 104 30 12 chr1 76002546 76003295 -121192137 - Lx LINE L1 -25 6629 5873 4 1164 381 22 0 0 chr1 76003295 76003341 -121192091 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1164 7123 107 17 7 chr1 76003341 76003821 -121191611 - Lx LINE L1 -782 5872 5381 4 1164 648 312 90 43 chr1 76003914 76004100 -121191332 + MLT1A0 LTR MaLR 5 210 -155 6 1164 917 279 17 57 chr1 76004100 76004400 -121191032 + B4 SINE B4 1 288 -4 7 1164 303 28 0 0 chr1 76004404 76004440 -121190992 + (CCA)n Simple_repeat Simple_repeat 3 38 0 8 1164 648 312 90 43 chr1 76004440 76004459 -121190973 + MLT1A0 LTR MaLR 211 223 -142 6 1164 423 0 0 0 chr1 76004459 76004506 -121190926 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1164 648 312 90 43 chr1 76004506 76004639 -121190793 + MLT1A0 LTR MaLR 224 362 -3 6 1164 310 167 27 40 chr1 76005211 76005286 -121190146 - HAL1-3A_ME LINE L1 -810 2048 1975 1 1164 443 210 17 0 chr1 76005286 76005405 -121190027 + (TATG)n Simple_repeat Simple_repeat 2 122 0 1 1164 1111 218 75 29 chr1 76005406 76005685 -121189747 - B4A SINE B4 0 292 1 1 1164 675 280 27 27 chr1 76006607 76006794 -121188638 + ID_B1 SINE B4 15 201 -23 1 1164 343 308 56 37 chr1 76007707 76007869 -121187563 - MLT1C LTR MaLR -2 465 301 1 1164 182 323 105 0 chr1 76008020 76008153 -121187279 - L2 LINE L2 -783 2636 2490 1 1164 311 0 26 0 chr1 76008260 76008299 -121187133 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1164 261 388 20 13 chr1 76011049 76011198 -121184234 - MLT1C LTR MaLR -212 232 83 1 1164 345 284 10 10 chr1 76011308 76011411 -121184021 - Lx8 LINE L1 -559 6914 6812 1 1164 798 147 0 7 chr1 76011488 76011632 -121183800 - URR1B DNA MER1_type 0 225 83 1 1164 261 293 44 15 chr1 76012959 76013094 -121182338 + (TATG)n Simple_repeat Simple_repeat 2 140 0 1 1164 418 333 51 105 chr1 76013108 76013359 -121182073 - B4 SINE B4 -13 279 42 2 1164 1075 266 17 99 chr1 76013359 76013772 -121181660 - MTE2a LTR MaLR 0 379 1 2 1164 418 333 51 105 chr1 76013772 76013815 -121181617 - B4 SINE B4 -251 41 1 2 1164 510 258 109 36 chr1 76013836 76014110 -121181322 + RLTR15 LTR ERVK 1 294 -65 2 1164 1752 242 113 42 chr1 76014457 76015057 -121180375 - L1MB8 LINE L1 0 6178 5536 2 1164 441 103 0 0 chr1 76015107 76015175 -121180257 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1164 610 233 0 79 chr1 76016393 76016570 -121178862 - RMER30 DNA MER1_type -39 163 1 2 1164 492 332 101 39 chr1 76016678 76017016 -121178416 + ORR1E LTR MaLR 1 359 0 2 1164 180 0 0 0 chr1 76018474 76018494 -121176938 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 2 1164 186 103 0 0 chr1 76018818 76018847 -121176585 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1164 488 311 11 63 chr1 76018854 76019043 -121176389 - B4A SINE B4 -29 263 85 2 1164 355 245 11 0 chr1 76019743 76019837 -121175595 + L1M3 LINE L1 5485 5579 -592 3 1164 439 267 130 22 chr1 76020736 76020763 -121174669 + B3A SINE B2 1 33 -165 3 1164 416 19 0 19 chr1 76020763 76020817 -121174615 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1164 439 268 130 23 chr1 76020817 76020947 -121174485 + B3A SINE B2 34 173 -43 3 1164 25 65 0 0 chr1 76020978 76021024 -121174408 + AT_rich Low_complexity Low_complexity 1 46 0 3 1165 531 276 119 65 chr1 76022501 76022838 -121172594 - ORR1E LTR MaLR -3 356 2 3 1165 469 311 60 42 chr1 76023180 76023395 -121172037 + B4 SINE B4 72 290 -2 3 1165 251 373 62 22 chr1 76023773 76023998 -121171434 + MIRb SINE MIR 23 256 -12 3 1165 209 274 48 0 chr1 76027166 76027250 -121168182 + CT-rich Low_complexity Low_complexity 3 90 0 3 1165 23 54 0 0 chr1 76029038 76029075 -121166357 + AT_rich Low_complexity Low_complexity 1 37 0 3 1165 24 53 0 0 chr1 76029101 76029139 -121166293 + AT_rich Low_complexity Low_complexity 1 38 0 3 1165 770 221 17 16 chr1 76029245 76029453 -121165979 - B3A SINE B2 -4 191 3 4 1165 1112 69 21 0 chr1 76029582 76029726 -121165706 - B1_Mm SINE Alu 0 147 1 4 1165 333 195 121 68 chr1 76029729 76029861 -121165571 - L1MB4 LINE L1 -121 6059 5921 4 1165 185 0 40 0 chr1 76030010 76030035 -121165397 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1165 488 146 11 0 chr1 76030109 76030198 -121165234 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 1165 577 243 125 112 chr1 76030202 76030489 -121164943 - B4A SINE B4 0 292 2 4 1165 381 278 71 86 chr1 76030490 76030870 -121164562 - L1MB4 LINE L1 -343 5835 5460 4 1165 547 280 80 86 chr1 76031533 76031846 -121163586 + MTD LTR MaLR 1 311 -108 4 1165 194 390 61 6 chr1 76032067 76032232 -121163200 + L2b LINE L2 2965 3138 -237 4 1165 219 36 0 0 chr1 76033711 76033739 -121161693 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1165 391 280 9 0 chr1 76034494 76034601 -121160831 + MLT1B LTR MaLR 283 390 0 4 1165 628 231 123 26 chr1 76034802 76034997 -121160435 - B3 SINE B2 -2 214 1 5 1165 199 54 26 26 chr1 76035149 76035187 -121160245 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1165 340 273 37 0 chr1 76035515 76035606 -121159826 - PB1D10 SINE Alu -1 148 34 5 1165 400 308 169 33 chr1 76035642 76036032 -121159400 - MLT1H LTR MaLR -67 482 40 5 1165 460 266 74 31 chr1 76036247 76036410 -121159022 + MLT1C LTR MaLR 61 230 -237 5 1165 251 355 0 0 chr1 76036638 76036700 -121158732 + ID4_ SINE ID 7 68 -15 5 1165 460 211 120 26 chr1 76036767 76036884 -121158548 - B1_Mur2 SINE Alu -9 140 13 5 1165 786 273 32 61 chr1 76036915 76037192 -121158240 + B4A SINE B4 1 269 -23 5 1165 203 315 0 0 chr1 76037209 76037263 -121158169 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1165 284 185 0 15 chr1 76039560 76039626 -121155806 - L1ME5 LINE L1 -259 5935 5871 5 1165 293 348 10 61 chr1 76039679 76039875 -121155557 - L2a LINE L2 -4 3422 3237 6 1165 686 210 7 0 chr1 76042206 76042506 -121152926 + (TG)n Simple_repeat Simple_repeat 1 302 0 6 1165 333 0 0 0 chr1 76043385 76043422 -121152010 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1165 412 296 339 24 chr1 76043449 76043660 -121151772 - B4A SINE B4 -14 278 2 6 1165 540 0 0 0 chr1 76043668 76043728 -121151704 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1165 225 379 23 0 chr1 76043886 76043973 -121151459 + LTR16E2 LTR ERVL 174 262 -306 6 1165 605 230 67 0 chr1 76044030 76044165 -121151267 - B1F SINE Alu -1 148 5 6 1165 239 350 46 79 chr1 76044570 76044722 -121150710 + MER5A DNA MER1_type 7 153 -36 6 1165 201 114 57 0 chr1 76045044 76045079 -121150353 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1165 229 286 35 12 chr1 76045798 76045883 -121149549 - MIR SINE MIR -87 121 35 6 1165 2277 149 8 26 chr1 76047672 76048057 -121147375 + ORR1C1 LTR MaLR 1 378 0 7 1165 879 10 0 0 chr1 76048101 76048201 -121147231 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 7 1165 1455 28 0 11 chr1 76048205 76048383 -121147049 - L1Md_F2 LINE L1 -19 6563 6388 7 1165 819 200 71 0 chr1 76049171 76049341 -121146091 + B3 SINE B2 1 182 -34 7 1165 533 209 12 12 chr1 76049341 76049506 -121145926 + (TA)n Simple_repeat Simple_repeat 2 166 0 7 1165 950 183 5 77 chr1 76049509 76049704 -121145728 - B3A SINE B2 -16 182 2 7 1165 262 330 167 19 chr1 76051541 76051751 -121143681 + MIR SINE MIR 12 252 -10 7 1165 842 88 27 0 chr1 76051754 76051901 -121143531 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 7 1165 30962 5 0 0 chr1 76052367 76055798 -121139634 + L1Md_A LINE L1 2156 5586 -297 7 1165 9182 4 0 0 chr1 76055798 76056794 -121138638 + L1Md_A LINE L1 5587 6582 0 7 1165 294 189 0 0 chr1 76056803 76056856 -121138576 - B4 SINE B4 -72 220 168 7 1165 555 188 0 0 chr1 76056912 76057024 -121138408 + (TA)n Simple_repeat Simple_repeat 2 113 0 8 1165 551 260 23 74 chr1 76057112 76057328 -121138104 - L1MC1 LINE L1 -28 6305 6101 8 1165 492 18 0 0 chr1 76057954 76058011 -121137421 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1165 356 260 11 11 chr1 76058313 76058488 -121136944 + (TA)n Simple_repeat Simple_repeat 2 176 0 8 1165 358 98 0 0 chr1 76058587 76058638 -121136794 + HAL1-3A_ME LINE L1 1975 2025 -833 8 1165 1029 257 5 0 chr1 76058643 76058853 -121136579 - ID_B1 SINE B4 -12 212 2 8 1165 580 358 129 18 chr1 76058989 76059484 -121135948 + MLT1G3 LTR MaLR 34 583 -12 8 1165 269 333 24 8 chr1 76059736 76059860 -121135572 - L1MB5 LINE L1 -8 6166 6041 8 1165 208 192 0 19 chr1 76059976 76060029 -121135403 - MIRc SINE MIR -155 113 62 8 1165 278 326 77 8 chr1 76061263 76061393 -121134039 + MIRb SINE MIR 20 158 -110 8 1165 21 57 0 0 chr1 76061564 76061599 -121133833 + AT_rich Low_complexity Low_complexity 1 35 0 9 1165 370 287 0 36 chr1 76061648 76061760 -121133672 - RSINE1 SINE B4 -43 122 15 9 1165 926 267 4 22 chr1 76061776 76062006 -121133426 - B4A SINE B4 -63 229 4 9 1165 558 301 25 45 chr1 76063216 76063540 -121131892 + ORR1E LTR MaLR 1 311 -59 9 1165 673 319 8 34 chr1 76064126 76064360 -121131072 - MLT2E LTR ERVL -400 228 1 9 1165 1113 39 0 48 chr1 76064458 76064647 -121130785 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1165 519 82 0 0 chr1 76064652 76064725 -121130707 + (GA)n Simple_repeat Simple_repeat 2 74 0 9 1165 408 40 0 0 chr1 76064881 76064931 -121130501 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1165 324 274 42 0 chr1 76066999 76067094 -121128338 - PB1D10 SINE Alu -6 111 13 9 1165 384 274 44 52 chr1 76067153 76067288 -121128144 + MER20 DNA MER1_type 86 219 0 9 1165 318 169 42 0 chr1 76068465 76068536 -121126896 - HAL1-2a_MD LINE L1 -608 2416 2343 1 1165 182 352 28 0 chr1 76068859 76068930 -121126502 + MER5B DNA MER1_type 9 81 -97 1 1165 327 299 46 23 chr1 76069322 76069452 -121125980 - L2a LINE L2 -48 3378 3246 1 1165 345 336 54 37 chr1 76069461 76069702 -121125730 - MLT1F LTR MaLR 0 548 304 1 1165 460 255 166 45 chr1 76069911 76070338 -121125094 - L2a LINE L2 -419 3000 2522 1 1165 353 22 22 0 chr1 76070481 76070527 -121124905 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1165 805 244 119 81 chr1 76070886 76071020 -121124412 + MTE2a LTR MaLR 17 173 -246 1 1165 255 79 0 0 chr1 76071020 76071058 -121124374 + (CAGG)n Simple_repeat Simple_repeat 3 40 0 1 1165 525 83 0 0 chr1 76071059 76071143 -121124289 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1165 805 219 117 96 chr1 76071143 76071380 -121124052 + MTE2a LTR MaLR 146 377 -2 1 1165 299 240 0 0 chr1 76071419 76071494 -121123938 + MADE2 DNA Mariner 1 75 -5 1 1165 240 272 0 52 chr1 76071671 76071768 -121123664 - L3b LINE CR1 -241 241 150 1 1165 24 0 0 0 chr1 76073118 76073142 -121122290 + AT_rich Low_complexity Low_complexity 1 24 0 1 1165 345 366 62 33 chr1 76075276 76075550 -121119882 + LTR33A_ LTR ERVL 241 522 -9 1 1165 180 0 0 0 chr1 76075695 76075715 -121119717 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 1165 262 318 90 9 chr1 76075929 76076040 -121119392 - MER117 DNA MER1_type -77 120 1 1 1165 426 175 0 0 chr1 76076264 76076344 -121119088 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1165 254 308 0 37 chr1 76079106 76079187 -121116245 - MIRm SINE MIR -119 157 80 1 1165 516 304 37 82 chr1 76079534 76079778 -121115654 + B4A SINE B4 20 252 -40 1 1165 441 0 0 0 chr1 76079816 76079865 -121115567 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1165 234 285 23 36 chr1 76080812 76080957 -121114475 - ID2 SINE ID -7 145 1 1 1165 302 257 94 32 chr1 76082498 76082631 -121112801 - MLT1J LTR MaLR -21 589 384 1 1165 1888 164 30 50 chr1 76083034 76083431 -121112001 + MTC LTR MaLR 5 393 -28 1 1165 977 263 91 3 chr1 76085089 76085309 -121110123 + Lx7 LINE L1 6701 6934 -762 1 1165 279 0 0 0 chr1 76085309 76085340 -121110092 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1 1165 977 263 91 3 chr1 76085340 76085417 -121110015 + Lx7 LINE L1 6935 7023 -673 1 1165 261 277 84 91 chr1 76085796 76085939 -121109493 - L1M1 LINE L1 -614 5689 5548 1 1165 660 278 86 51 chr1 76085977 76086409 -121109023 - L1M3 LINE L1 -757 5383 4937 1 1165 251 342 80 20 chr1 76086427 76086627 -121108805 + L2a LINE L2 2912 3123 -303 1 1165 468 0 0 0 chr1 76087502 76087554 -121107878 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1165 594 0 0 0 chr1 76088835 76088901 -121106531 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1165 380 228 42 50 chr1 76089407 76089527 -121105905 - RMER30 DNA MER1_type -2 200 82 1 1165 1046 194 128 36 chr1 76090833 76091137 -121104295 - IAPEY3_LTR LTR ERVK 0 332 1 1 1165 524 246 22 7 chr1 76091256 76091395 -121104037 - ORR1E LTR MaLR -218 141 1 1 1165 297 326 92 8 chr1 76091999 76092129 -121103303 + MIRm SINE MIR 72 212 -64 1 1165 259 336 16 0 chr1 76092237 76092359 -121103073 + (CCA)n Simple_repeat Simple_repeat 2 125 0 1 1165 704 244 6 6 chr1 76092359 76092520 -121102912 + ID_B1 SINE B4 64 224 0 1 1165 256 227 26 7 chr1 76093563 76093714 -121101718 + (CCA)n Simple_repeat Simple_repeat 1 154 0 1 1165 286 281 20 20 chr1 76093731 76093829 -121101603 + C-rich Low_complexity Low_complexity 2 99 0 1 1165 195 282 44 56 chr1 76094047 76094137 -121101295 + MIRc SINE MIR 176 264 -4 1 1165 183 302 0 0 chr1 76096037 76096090 -121099342 + MIRm SINE MIR 206 258 -18 1 1165 1609 172 42 12 chr1 76096153 76096483 -121098949 + RLTR28B LTR ERVL 1 340 -141 1 1165 439 237 86 29 chr1 76096806 76096894 -121098538 - B1F SINE Alu -2 147 52 1 1165 3722 166 64 13 chr1 76096894 76097232 -121098200 + RMER6D LTR ERVK 2 349 -371 1 1165 192 30 0 120 chr1 76097232 76097307 -121098125 + (TGG)n Simple_repeat Simple_repeat 3 68 0 1 1165 3722 166 64 13 chr1 76097307 76097652 -121097780 + RMER6D LTR ERVK 350 720 0 1 1165 439 237 86 29 chr1 76097652 76097702 -121097730 - B1F SINE Alu -98 51 2 1 1165 678 231 49 0 chr1 76097760 76097903 -121097529 - RSINE1 SINE B4 0 165 16 1 1165 572 170 31 12 chr1 76098856 76099017 -121096415 + (TA)n Simple_repeat Simple_repeat 2 165 0 1 1165 366 23 0 0 chr1 76099198 76099241 -121096191 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1165 203 170 0 60 chr1 76099241 76099291 -121096141 + GA-rich Low_complexity Low_complexity 6 52 0 1 1165 21 36 0 0 chr1 76099383 76099411 -121096021 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 473 278 67 61 chr1 76099506 76099686 -121095746 - B3A SINE B2 0 198 18 1 1165 296 287 23 0 chr1 76099721 76099808 -121095624 - MIR SINE MIR -151 111 23 1 1165 295 269 0 0 chr1 76100131 76100198 -121095234 - ID4 SINE ID 0 83 17 1 1165 525 104 0 0 chr1 76100223 76100300 -121095132 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1165 732 263 62 69 chr1 76100304 76100578 -121094854 - B4A SINE B4 -16 276 5 1 1165 453 219 52 81 chr1 76101967 76102141 -121093291 + MTEb LTR MaLR 211 379 0 1 1165 1432 221 84 14 chr1 76102739 76103083 -121092349 - ORR1D2 LTR MaLR 0 370 3 1 1165 222 208 0 0 chr1 76103162 76103210 -121092222 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1165 441 310 91 79 chr1 76103326 76103578 -121091854 - MLT1H LTR MaLR -155 394 140 1 1165 26 0 0 0 chr1 76105192 76105218 -121090214 + AT_rich Low_complexity Low_complexity 1 26 0 1 1165 315 275 147 0 chr1 76105464 76105573 -121089859 + MIR SINE MIR 104 228 -34 1 1165 236 244 112 55 chr1 76105848 76106075 -121089357 - L1MA4 LINE L1 0 6300 6048 1 1165 183 80 0 0 chr1 76106564 76106589 -121088843 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1165 673 322 44 3 chr1 76107678 76107996 -121087436 + L1ME3A LINE L1 5571 5901 -272 1 1165 24 0 0 0 chr1 76109019 76109043 -121086389 + AT_rich Low_complexity Low_complexity 1 24 0 1 1165 664 335 77 30 chr1 76111417 76111848 -121083584 + MLT1C LTR MaLR 12 462 -5 1 1165 555 107 0 0 chr1 76112786 76112870 -121082562 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1165 21 0 0 0 chr1 76113160 76113181 -121082251 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 657 260 77 23 chr1 76113314 76113574 -121081858 + L1MB3 LINE L1 5895 6168 -15 1 1165 293 344 68 31 chr1 76114353 76114515 -121080917 + MIRb SINE MIR 34 201 -67 1 1165 423 0 0 0 chr1 76114581 76114628 -121080804 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1165 900 134 14 5 chr1 76116735 76116945 -121078487 + CT-rich Low_complexity Low_complexity 1 212 0 1 1165 300 342 35 17 chr1 76116945 76117061 -121078371 - ID_B1 SINE B4 -21 203 86 1 1165 21 0 0 0 chr1 76117868 76117889 -121077543 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 405 259 45 45 chr1 76118940 76119094 -121076338 - ORSL-2b DNA Tip100 -7 501 348 1 1165 426 311 81 76 chr1 76119367 76119750 -121075682 + Charlie4a DNA MER1_type 75 459 -49 1 1165 4218 109 63 32 chr1 76119817 76120529 -121074903 + RMER17A LTR ERVK 1 734 -17 1 1165 14111 67 5 1 chr1 76120920 76122724 -121072708 - L1Md_F2 LINE L1 -419 5464 3653 1 1165 1064 70 0 0 chr1 76122722 76122851 -121072581 + L1Md_F2 LINE L1 5457 5585 -298 1 1165 8496 56 0 8 chr1 76122852 76123856 -121071576 + L1Md_F2 LINE L1 5587 6582 0 1 1165 876 294 90 93 chr1 76123985 76124424 -121071008 + L1MB7 LINE L1 4702 5172 -974 1 1165 717 240 45 13 chr1 76124424 76124580 -121070852 + RSINE1 SINE B4 5 165 0 1 1165 1644 260 73 47 chr1 76124580 76125350 -121070082 + L1MB7 LINE L1 5173 5925 -259 1 1165 3212 162 46 45 chr1 76126568 76127174 -121068258 - RMER1B Other Other -4 1062 456 1 1165 259 351 62 8 chr1 76127196 76127325 -121068107 - RMER1A Other Other -773 257 122 1 1165 204 330 0 40 chr1 76127518 76127619 -121067813 + MIR SINE MIR 166 262 0 1 1165 632 264 15 8 chr1 76127696 76127826 -121067606 + B1_Mur1 SINE Alu 3 133 -16 1 1165 561 142 39 27 chr1 76127828 76128085 -121067347 + G-rich Low_complexity Low_complexity 1 260 0 1 1165 520 295 87 7 chr1 76129037 76129187 -121066245 - RSINE1 SINE B4 0 165 4 1 1165 2478 88 9 24 chr1 76129378 76129717 -121065715 - L1_Mus3 LINE L1 -6 6632 6299 1 1165 188 318 40 37 chr1 76129965 76130068 -121065364 + MIRc SINE MIR 88 194 -74 1 1165 241 333 102 42 chr1 76130820 76131036 -121064396 - LTR33A_ LTR ERVL -21 510 282 1 1165 292 296 0 0 chr1 76131404 76131475 -121063957 + ID4 SINE ID 13 83 0 1 1165 7903 36 36 3 chr1 76131603 76132629 -121062803 - L1Md_F2 LINE L1 -2 6580 5519 1 1165 257 264 56 33 chr1 76133268 76133358 -121062074 + B1F2 SINE Alu 7 98 -51 1 1165 882 189 158 25 chr1 76133813 76134009 -121061423 + URR1A DNA MER1_type 5 226 0 1 1165 1266 51 11 6 chr1 76135143 76135319 -121060113 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 1 1165 401 0 20 0 chr1 76135319 76135368 -121060064 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 1 1165 739 168 8 53 chr1 76135370 76135502 -121059930 - B1_Mus1 SINE Alu -21 127 2 1 1165 23 0 0 0 chr1 76136951 76136974 -121058458 + AT_rich Low_complexity Low_complexity 1 23 0 1 1165 3073 310 35 61 chr1 76137008 76138507 -121056925 - Lx9 LINE L1 -30 7614 6155 1 1165 2120 216 135 24 chr1 76138620 76139155 -121056277 - RMER19B LTR ERVK 0 902 309 1 1165 264 358 62 54 chr1 76139377 76139619 -121055813 + MIRc SINE MIR 12 255 -13 1 1165 468 0 0 0 chr1 76140112 76140164 -121055268 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1165 4985 113 48 117 chr1 76141570 76142543 -121052889 - RMER17A2 LTR ERVK 0 906 1 1 1165 431 299 9 0 chr1 76143007 76143114 -121052318 + ID_B1 SINE B4 112 219 -5 1 1165 181 163 89 44 chr1 76143296 76143341 -121052091 - L2 LINE L2 -700 2719 2673 2 1165 1166 73 6 0 chr1 76144920 76145099 -121050333 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1165 241 358 48 29 chr1 76145599 76145809 -121049623 + L2c LINE L2 3125 3338 -49 2 1165 414 0 0 0 chr1 76146699 76146745 -121048687 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1165 376 256 28 101 chr1 76147020 76147152 -121048280 - MIRb SINE MIR -2 266 134 2 1165 2122 168 67 5 chr1 76147152 76147523 -121047909 + ORR1B1 LTR MaLR 1 394 0 2 1165 376 252 12 112 chr1 76147523 76147590 -121047842 - MIRb SINE MIR -132 136 72 2 1165 1047 137 0 0 chr1 76149237 76149412 -121046020 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2 1165 21 0 0 0 chr1 76150101 76150122 -121045310 + AT_rich Low_complexity Low_complexity 1 21 0 2 1165 558 0 0 0 chr1 76150934 76150996 -121044436 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1165 755 293 62 0 chr1 76151823 76152065 -121043367 + MER2 DNA MER2_type 24 280 -65 2 1166 383 387 99 33 chr1 76153565 76153899 -121041533 - MLT1I LTR MaLR -12 399 44 2 1166 610 263 74 136 chr1 76154365 76154783 -121040649 - MLT1A1 LTR MaLR -16 392 1 2 1166 228 404 0 81 chr1 76154831 76154955 -121040477 + MER21B LTR ERV1 355 468 -395 2 1166 2003 316 57 24 chr1 76154972 76155967 -121039465 - Lx8 LINE L1 -3 7470 6400 2 1166 702 285 75 58 chr1 76155967 76156380 -121039052 + Lx8 LINE L1 5902 6321 -1152 2 1166 325 67 50 0 chr1 76156418 76156478 -121038954 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 1166 404 316 71 46 chr1 76156478 76156674 -121038758 + MER21B LTR ERV1 513 713 -150 2 1166 390 293 16 49 chr1 76156881 76157003 -121038429 - PB1 SINE Alu -2 125 8 2 1166 300 311 71 38 chr1 76157265 76157449 -121037983 - MIRb SINE MIR -35 233 44 2 1166 428 0 19 0 chr1 76157661 76157713 -121037719 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1166 261 0 0 0 chr1 76157808 76157837 -121037595 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1166 360 0 0 0 chr1 76158038 76158078 -121037354 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1166 1519 170 83 89 chr1 76158181 76158529 -121036903 + ORR1B1 LTR MaLR 41 386 -8 2 1166 1271 87 0 0 chr1 76159184 76159345 -121036087 - L1_Mus2 LINE L1 0 6566 6406 2 1166 314 329 74 31 chr1 76159725 76159888 -121035544 + MIR3 SINE MIR 36 205 -3 2 1166 425 50 17 0 chr1 76160097 76160157 -121035275 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1166 323 222 83 0 chr1 76160944 76161016 -121034416 - ID_B1 SINE B4 -10 214 137 2 1166 31 44 0 0 chr1 76161019 76161064 -121034368 + AT_rich Low_complexity Low_complexity 1 45 0 2 1166 3812 261 108 49 chr1 76161203 76163091 -121032341 - Lx9 LINE L1 -171 7473 5433 2 1166 426 39 0 0 chr1 76163600 76163652 -121031780 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 2 1166 23 0 0 0 chr1 76164575 76164598 -121030834 + AT_rich Low_complexity Low_complexity 1 23 0 2 1166 420 356 141 11 chr1 76166303 76166587 -121028845 + MLT1K LTR MaLR 196 516 -79 2 1166 347 160 13 0 chr1 76166884 76166959 -121028473 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1166 378 244 0 12 chr1 76167035 76167118 -121028314 - ID4 SINE ID 0 83 2 2 1166 400 294 17 0 chr1 76167192 76167311 -121028121 - MER5A1 DNA MER1_type -3 163 43 2 1166 333 0 0 0 chr1 76167330 76167367 -121028065 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1166 837 20 0 0 chr1 76167857 76167956 -121027476 + (TTTCC)n Simple_repeat Simple_repeat 3 101 0 2 1166 745 193 22 22 chr1 76167962 76168100 -121027332 - B1_Mus1 SINE Alu -9 139 2 2 1166 1902 198 64 34 chr1 76168163 76168531 -121026901 - MTC LTR MaLR 0 421 37 2 1166 758 187 199 21 chr1 76168531 76168722 -121026710 + URR1B DNA MER1_type 1 225 0 2 1166 1902 198 64 34 chr1 76168722 76168762 -121026670 - MTC LTR MaLR -385 36 1 2 1166 528 45 0 0 chr1 76168929 76168996 -121026436 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1166 222 276 169 51 chr1 76169017 76169212 -121026220 + MIR SINE MIR 31 248 -14 2 1166 1167 318 8 14 chr1 76169218 76169585 -121025847 - MLT1A0 LTR MaLR 0 365 1 2 1166 34741 85 9 7 chr1 76170300 76176495 -121018937 - L1Md_F2 LINE L1 0 6582 392 2 1166 281 24 0 47 chr1 76177057 76177100 -121018332 + (TCTCTG)n Simple_repeat Simple_repeat 3 43 0 2 1166 1025 255 19 0 chr1 76177124 76177332 -121018100 - ID_B1 SINE B4 -12 212 1 2 1166 326 267 65 28 chr1 76177986 76178094 -121017338 + MLT1A1 LTR MaLR 268 379 -29 2 1166 1269 54 0 0 chr1 76178214 76178361 -121017071 - B1_Mus2 SINE Alu 0 147 1 2 1166 934 235 86 22 chr1 76178489 76178711 -121016721 + B4A SINE B4 57 292 0 2 1166 814 274 85 0 chr1 76179187 76179388 -121016044 - B4A SINE B4 -73 219 2 2 1166 604 275 43 21 chr1 76179665 76179860 -121015572 - MLT1J2 LTR MaLR -190 254 59 2 1166 437 274 94 0 chr1 76179860 76179977 -121015455 - B1F1 SINE Alu -17 132 5 2 1166 311 270 144 0 chr1 76179880 76179991 -121015441 - B4 SINE B4 -95 197 71 2 1166 492 18 0 0 chr1 76180168 76180225 -121015207 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1166 793 188 0 0 chr1 76180232 76180360 -121015072 - RSINE1 SINE B4 -36 129 2 2 1166 21 57 0 0 chr1 76182894 76182929 -121012503 + AT_rich Low_complexity Low_complexity 1 35 0 2 1166 2090 127 14 58 chr1 76183269 76183613 -121011819 - ORR1A4 LTR MaLR 0 329 1 2 1166 417 221 57 19 chr1 76183889 76183995 -121011437 + MLT1A0 LTR MaLR 235 344 -21 2 1166 471 282 87 0 chr1 76184008 76184203 -121011229 + L2a LINE L2 3210 3421 -5 2 1166 37 69 0 0 chr1 76185555 76185627 -121009805 + AT_rich Low_complexity Low_complexity 1 72 0 2 1166 677 317 64 35 chr1 76186430 76186806 -121008626 - Lx8 LINE L1 -3 7470 7084 2 1166 369 248 67 25 chr1 76186969 76187089 -121008343 + MIRb SINE MIR 88 212 -56 2 1166 190 346 36 86 chr1 76187521 76187660 -121007772 - L2b LINE L2 -253 3122 2991 2 1166 202 306 161 34 chr1 76187735 76187884 -121007548 - L2b LINE L2 -529 2890 2723 2 1166 1016 259 110 22 chr1 76188164 76188519 -121006913 - MLT1B LTR MaLR -4 386 1 2 1166 612 0 0 0 chr1 76189192 76189260 -121006172 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1166 900 238 10 58 chr1 76189264 76189469 -121005963 - ID_B1 SINE B4 -28 196 2 2 1166 420 292 37 61 chr1 76190232 76190396 -121005036 + RSINE1 SINE B4 1 160 -5 2 1166 415 173 39 34 chr1 76190602 76190781 -121004651 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1166 236 242 258 0 chr1 76191832 76191894 -121003538 - B1F SINE Alu -52 97 20 2 1166 25 31 0 0 chr1 76192235 76192267 -121003165 + AT_rich Low_complexity Low_complexity 1 32 0 2 1166 399 41 0 0 chr1 76192300 76192349 -121003083 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1166 180 125 0 0 chr1 76192909 76192941 -121002491 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1166 451 82 14 14 chr1 76193161 76193235 -121002197 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 2 1166 976 285 90 51 chr1 76193365 76193698 -121001734 + ORR1D2 LTR MaLR 25 370 0 2 1166 443 275 51 44 chr1 76194826 76194963 -121000469 + ORR1D2 LTR MaLR 87 231 -128 2 1166 252 0 0 0 chr1 76195547 76195575 -120999857 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1166 300 338 69 21 chr1 76196434 76196579 -120998853 + MLT1H LTR MaLR 3 154 -395 2 1166 892 281 64 35 chr1 76197298 76197611 -120997821 + MLT1A LTR MaLR 53 374 0 2 1166 201 108 0 0 chr1 76197837 76197874 -120997558 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1166 412 332 90 21 chr1 76198286 76198314 -120997118 - MER58A DNA MER1_type -17 207 175 2 1166 963 50 0 0 chr1 76198314 76198435 -120996997 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 2 1166 412 332 90 21 chr1 76198435 76198594 -120996838 - MER58A DNA MER1_type -50 174 7 2 1166 224 259 0 0 chr1 76198604 76198662 -120996770 + MIR SINE MIR 184 241 -21 2 1166 1056 239 112 4 chr1 76198815 76199075 -120996357 + B4 SINE B4 1 288 -4 2 1166 279 0 0 0 chr1 76199932 76199963 -120995469 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1166 280 333 9 27 chr1 76200611 76200722 -120994710 - MamGypLTR1b LTR Gypsy -3 779 671 2 1166 722 192 30 8 chr1 76200878 76201009 -120994423 + B1_Mur1 SINE Alu 1 134 -15 2 1166 254 247 34 34 chr1 76201017 76201105 -120994327 + L1M5 LINE L1 2437 2524 -3622 2 1166 969 302 65 48 chr1 76201257 76201876 -120993556 + L1M5 LINE L1 2689 3317 -2829 2 1166 309 340 51 3 chr1 76202084 76202371 -120993061 + L1M5 LINE L1 4975 5277 -869 2 1166 649 260 45 95 chr1 76202400 76202621 -120992811 + B3A SINE B2 2 211 -5 2 1166 375 296 190 60 chr1 76202659 76202714 -120992718 - MLT1A LTR MaLR 0 374 313 2 1166 213 121 0 0 chr1 76202714 76202747 -120992685 + (CAG)n Simple_repeat Simple_repeat 1 33 0 2 1166 375 296 190 60 chr1 76202747 76203022 -120992410 - MLT1A LTR MaLR -62 312 1 2 1166 231 336 20 144 chr1 76203390 76203536 -120991896 + L1M5 LINE L1 5436 5563 -677 2 1166 352 314 29 0 chr1 76204108 76204213 -120991219 + PB1D10 SINE Alu 10 117 0 2 1166 21 0 0 0 chr1 76205113 76205134 -120990298 + AT_rich Low_complexity Low_complexity 1 21 0 2 1166 385 59 0 0 chr1 76205200 76205251 -120990181 - ORR1A4 LTR MaLR -5 324 274 2 1166 450 0 0 0 chr1 76205327 76205377 -120990055 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2 1166 3093 78 0 14 chr1 76205379 76205796 -120989636 - L1Md_F2 LINE L1 -23 6559 6149 2 1166 1525 152 7 74 chr1 76205796 76206141 -120989291 - ORR1A4 LTR MaLR -54 340 2 2 1166 346 313 160 18 chr1 76206533 76206702 -120988730 - B3A SINE B2 -4 194 2 2 1166 947 314 65 26 chr1 76207185 76207797 -120987635 - L1MB8 LINE L1 -17 6161 5519 2 1166 2036 18 44 0 chr1 76207858 76208086 -120987346 - L1Md_F2 LINE L1 -8 6574 6337 2 1166 2845 110 8 106 chr1 76208174 76208682 -120986750 - Lx2 LINE L1 0 6997 6540 2 1166 202 374 18 18 chr1 76210499 76210608 -120984824 + MIR3 SINE MIR 61 169 -39 2 1166 342 351 86 118 chr1 76210633 76210972 -120984460 - MER102a DNA MER1_type -2 328 1 2 1166 872 267 10 92 chr1 76211672 76211878 -120983554 - ID_B1 SINE B4 -13 211 23 3 1166 24 0 0 0 chr1 76211883 76211907 -120983525 + AT_rich Low_complexity Low_complexity 1 24 0 3 1166 799 313 30 47 chr1 76212005 76212303 -120983129 - MTE2a LTR MaLR -15 364 72 3 1166 303 273 14 154 chr1 76213456 76213599 -120981833 - RSINE1 SINE B4 -28 137 15 3 1166 336 64 0 0 chr1 76214739 76214786 -120980646 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3 1166 331 340 168 0 chr1 76215720 76215917 -120979515 + MLT1D LTR MaLR 13 242 -263 3 1166 375 290 295 105 chr1 76217318 76217654 -120977778 + MLT1A0 LTR MaLR 8 408 0 3 1166 372 257 0 45 chr1 76217783 76217893 -120977539 - MER5B DNA MER1_type -8 170 66 3 1166 305 47 23 0 chr1 76217904 76217947 -120977485 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1166 316 356 42 26 chr1 76217998 76218191 -120977241 + MIR SINE MIR 67 262 0 3 1166 388 255 0 43 chr1 76219054 76219169 -120976263 - MER5B DNA MER1_type -3 175 66 3 1166 305 47 23 0 chr1 76219180 76219223 -120976209 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1166 519 307 152 74 chr1 76219234 76219491 -120975941 - B4A SINE B4 -14 278 2 3 1166 229 268 0 82 chr1 76220576 76220637 -120974795 - B3A SINE B2 -47 151 96 3 1166 234 81 0 0 chr1 76220796 76220833 -120974599 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1166 706 314 67 45 chr1 76221004 76221408 -120974024 + MER90 LTR ERV1 2 414 -161 3 1166 221 0 0 33 chr1 76222198 76222228 -120973204 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1166 23 54 0 0 chr1 76222517 76222554 -120972878 + AT_rich Low_complexity Low_complexity 1 37 0 3 1166 6926 71 7 1 chr1 76223337 76224182 -120971250 - L1_Mus3 LINE L1 -4 6634 5785 3 1166 4412 64 4 11 chr1 76224196 76224736 -120970696 - L1_Mus2 LINE L1 -2 6564 6029 3 1166 1665 111 37 0 chr1 76224737 76224980 -120970452 - L1_Mm LINE L1 -87 5796 5545 3 1166 2785 121 0 2 chr1 76224978 76225393 -120970039 + L1_Mm LINE L1 4317 4730 -1153 3 1166 306 284 146 22 chr1 76226065 76226202 -120969230 - HAL1-3A_ME LINE L1 -420 2438 2285 3 1166 224 261 0 0 chr1 76226202 76226248 -120969184 + polypyrimidine Low_complexity Low_complexity 1 46 0 3 1166 311 267 146 15 chr1 76226248 76226385 -120969047 - HAL1-3A_ME LINE L1 -419 2439 2285 3 1166 441 201 12 38 chr1 76226385 76226545 -120968887 + CT-rich Low_complexity Low_complexity 2 157 0 3 1166 630 203 0 0 chr1 76226572 76226710 -120968722 + CT-rich Low_complexity Low_complexity 1 138 0 3 1166 897 267 25 5 chr1 76226710 76226913 -120968519 - ID_B1 SINE B4 -15 209 3 3 1166 4445 149 48 62 chr1 76227743 76228656 -120966776 + L1Md_F2 LINE L1 214 1170 -5554 3 1166 279 0 0 0 chr1 76228656 76228687 -120966745 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1166 33113 73 3 5 chr1 76228687 76233165 -120962267 + L1Md_F2 LINE L1 1152 5586 -297 3 1166 8145 70 1 6 chr1 76233165 76234164 -120961268 + L1Md_F2 LINE L1 5587 6580 -2 3 1166 2510 306 39 53 chr1 76234212 76235736 -120959696 - L1_Mur3 LINE L1 -55 5825 4323 3 1166 588 279 95 9 chr1 76236059 76236290 -120959142 - MER99 DNA hAT? -579 252 2 3 1166 31 26 0 0 chr1 76236341 76236379 -120959053 + AT_rich Low_complexity Low_complexity 1 38 0 3 1166 315 100 0 0 chr1 76236434 76236463 -120958969 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1166 459 92 0 0 chr1 76236463 76236528 -120958904 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1166 315 100 0 0 chr1 76236528 76236548 -120958884 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1166 851 196 21 7 chr1 76236619 76236763 -120958669 + B1_Mur1 SINE Alu 1 146 -3 3 1166 2846 123 178 13 chr1 76236816 76237294 -120958138 + RLTR31B_Mm LTR ERVK 1 557 0 3 1166 8695 70 33 3 chr1 76237343 76237376 -120958056 - Lx3_Mus LINE L1 0 7009 6980 3 1166 3321 75 9 37 chr1 76237376 76237832 -120957600 - L1_Mus3 LINE L1 -5 6633 6191 3 1166 8695 70 33 3 chr1 76237832 76238865 -120956567 - Lx3_Mus LINE L1 -30 6979 5910 3 1166 315 0 0 0 chr1 76238865 76238900 -120956532 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1166 8695 70 33 3 chr1 76238900 76239001 -120956431 - Lx3_Mus LINE L1 -1100 5909 5807 3 1166 214 300 111 0 chr1 76239572 76239662 -120955770 + L2c LINE L2 3256 3355 -32 3 1166 234 270 16 19 chr1 76240728 76240804 -120954628 + MIRc SINE MIR 92 169 -107 3 1166 200 326 20 0 chr1 76242631 76242680 -120952752 - L2b LINE L2 -20 3355 3306 3 1166 225 250 143 48 chr1 76242743 76242827 -120952605 - L2a LINE L2 0 3426 3335 3 1166 531 31 0 0 chr1 76245610 76245675 -120949757 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1166 414 0 0 0 chr1 76245854 76245900 -120949532 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1166 190 343 0 38 chr1 76246042 76246148 -120949284 - MIRb SINE MIR 0 268 167 3 1166 1320 119 0 16 chr1 76246253 76246441 -120948991 - B2_Mm2 SINE B2 -10 185 1 3 1166 1219 75 0 0 chr1 76246455 76246601 -120948831 - B1_Mus2 SINE Alu -1 146 1 3 1166 280 269 25 13 chr1 76246691 76246770 -120948662 + CT-rich Low_complexity Low_complexity 4 83 0 3 1166 356 329 62 41 chr1 76246773 76246919 -120948513 + B4 SINE B4 144 292 0 3 1166 309 26 0 25 chr1 76246927 76246962 -120948470 + HAL1-3A_ME LINE L1 1975 2009 -849 3 1166 441 0 0 0 chr1 76246962 76247011 -120948421 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1166 338 0 0 23 chr1 76248651 76248694 -120946738 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1166 215 377 99 12 chr1 76248860 76249021 -120946411 + MIR SINE MIR 24 198 -64 3 1166 409 242 42 108 chr1 76249339 76249506 -120945926 - URR1B DNA MER1_type 0 225 70 3 1166 224 280 0 0 chr1 76249683 76249733 -120945699 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1166 714 301 64 39 chr1 76249735 76250018 -120945414 - B4A SINE B4 -2 290 1 3 1166 530 249 34 34 chr1 76250220 76250405 -120945027 + B3 SINE B2 11 187 -8 3 1166 318 353 103 55 chr1 76250535 76250826 -120944606 - HAL1b LINE L1 -587 1422 1118 3 1166 949 178 113 10 chr1 76251576 76251780 -120943652 + URR1A DNA MER1_type 2 226 0 3 1166 807 296 85 50 chr1 76252715 76252975 -120942457 - B4A SINE B4 -18 274 6 3 1166 297 0 0 0 chr1 76253028 76253061 -120942371 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1166 399 98 0 0 chr1 76253061 76253121 -120942311 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1166 30 0 0 0 chr1 76253644 76253674 -120941758 + AT_rich Low_complexity Low_complexity 1 30 0 3 1166 423 321 31 52 chr1 76253876 76254116 -120941316 - MIR SINE MIR -10 252 22 3 1166 965 158 6 0 chr1 76255534 76255711 -120939721 + CT-rich Low_complexity Low_complexity 3 180 0 3 1166 431 113 14 0 chr1 76255712 76255783 -120939649 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 3 1166 214 297 27 82 chr1 76255805 76255915 -120939517 - L2c LINE L2 -16 3371 3268 3 1166 261 287 23 11 chr1 76256177 76256265 -120939167 + C-rich Low_complexity Low_complexity 4 92 0 3 1166 222 264 83 94 chr1 76256377 76256473 -120938959 - PB1D10 SINE Alu -9 108 14 3 1166 702 281 110 21 chr1 76257017 76257308 -120938124 + Charlie1b DNA MER1_type 23 339 -184 3 1166 232 232 18 0 chr1 76257532 76257588 -120937844 + Charlie1b DNA MER1_type 386 442 -81 3 1166 765 226 18 36 chr1 76257784 76257949 -120937483 - RSINE1 SINE B4 -1 164 3 3 1166 1116 157 57 103 chr1 76258575 76258917 -120936515 + ORR1A1 LTR MaLR 2 293 -34 3 1166 275 249 150 83 chr1 76259137 76259317 -120936115 - Charlie16a DNA MER1_type -125 217 26 3 1166 237 246 0 0 chr1 76260138 76260203 -120935229 + (TAA)n Simple_repeat Simple_repeat 1 65 0 3 1166 553 290 32 54 chr1 76260404 76260590 -120934842 - B3A SINE B2 -15 183 2 3 1166 180 135 0 0 chr1 76260864 76260901 -120934531 + (TTTTTA)n Simple_repeat Simple_repeat 1 37 0 3 1166 678 290 150 10 chr1 76261495 76261788 -120933644 + MLT2C2 LTR ERVL 95 428 -36 3 1166 894 144 0 16 chr1 76262708 76262891 -120932541 + CT-rich Low_complexity Low_complexity 1 180 0 3 1166 369 282 12 0 chr1 76262900 76262985 -120932447 - PB1D10 SINE Alu -29 88 3 3 1166 199 303 57 66 chr1 76263087 76263193 -120932239 + MIR SINE MIR 91 195 -67 3 1166 784 252 126 11 chr1 76263213 76263474 -120931958 - B4A SINE B4 0 292 2 3 1166 367 256 78 31 chr1 76263624 76263753 -120931679 - B1F SINE Alu -13 136 2 3 1166 11617 25 10 0 chr1 76263764 76265799 -120929633 - L1Md_T LINE L1 0 6582 4536 3 1166 284 0 0 27 chr1 76266681 76266718 -120928714 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1166 25 51 0 0 chr1 76268107 76268146 -120927286 + AT_rich Low_complexity Low_complexity 1 39 0 3 1166 522 0 0 0 chr1 76268259 76268317 -120927115 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1166 2270 268 128 38 chr1 76268318 76268763 -120926669 - Lx9 LINE L1 -178 7466 6986 3 1166 445 14 0 63 chr1 76268763 76268842 -120926590 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 3 1166 2270 268 128 38 chr1 76268842 76269235 -120926197 - Lx9 LINE L1 -659 6985 6554 3 1166 758 272 14 14 chr1 76269232 76269448 -120925984 + Lx9 LINE L1 5759 5974 -1670 3 1166 410 236 23 134 chr1 76269467 76269627 -120925805 + Lx9 LINE L1 6120 6329 -1315 3 1166 369 0 0 0 chr1 76269627 76269668 -120925764 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1166 410 316 70 0 chr1 76269668 76269812 -120925620 + Lx9 LINE L1 6330 6482 -1162 3 1166 328 320 0 39 chr1 76271258 76271362 -120924070 + MER63D DNA AcHobo 282 381 -680 3 1166 660 26 0 0 chr1 76273562 76273640 -120921792 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 3 1166 278 248 107 62 chr1 76273648 76273760 -120921672 - PB1D10 SINE Alu 0 117 1 3 1166 455 306 63 15 chr1 76273760 76273836 -120921596 - ID_B1 SINE B4 -201 91 6 3 1166 228 333 30 0 chr1 76273914 76274013 -120921419 + MER94 DNA AcHobo 1 102 -32 3 1166 281 291 98 23 chr1 76274280 76274512 -120920920 + L1ME2 LINE L1 5136 5386 -760 3 1166 765 308 79 93 chr1 76274570 76275353 -120920079 + L1ME2 LINE L1 5386 6157 -7 3 1166 1004 0 9 0 chr1 76275811 76275927 -120919505 + (TTCTC)n Simple_repeat Simple_repeat 2 118 0 3 1166 342 0 0 0 chr1 76276027 76276065 -120919367 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1166 552 164 0 0 chr1 76276065 76276175 -120919257 + (TG)n Simple_repeat Simple_repeat 2 111 0 4 1166 238 226 0 36 chr1 76276397 76276452 -120918980 - RMER15 LTR ERVL -113 462 410 4 1166 25 31 0 0 chr1 76276965 76276997 -120918435 + AT_rich Low_complexity Low_complexity 1 32 0 4 1166 1170 151 178 31 chr1 76277356 76277671 -120917761 + ORR1A4 LTR MaLR 6 374 0 4 1166 236 336 48 40 chr1 76277769 76277893 -120917539 + RSINE1 SINE B4 37 161 -4 4 1166 203 186 0 23 chr1 76277898 76277942 -120917490 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1166 536 324 7 35 chr1 76278050 76278191 -120917241 + ID_B1 SINE B4 80 216 -8 4 1166 186 150 0 0 chr1 76278198 76278238 -120917194 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1166 395 250 10 0 chr1 76278755 76278851 -120916581 + ID_B1 SINE B4 128 224 0 4 1166 352 355 45 40 chr1 76279330 76279506 -120915926 + MLT1J2 LTR MaLR 69 245 -203 4 1166 344 293 124 25 chr1 76280507 76280668 -120914764 - Arthur1 DNA Tip100 0 3947 3771 4 1166 353 311 208 9 chr1 76280705 76280926 -120914506 - Arthur1 DNA Tip100 -245 3702 3438 4 1166 762 334 86 53 chr1 76280945 76281257 -120914175 - Arthur1 DNA Tip100 -3393 554 232 4 1166 2241 392 69 44 chr1 76281257 76281591 -120913841 + FordPrefect DNA Tip100 2 361 -1322 4 1166 1957 62 4 26 chr1 76281591 76281858 -120913574 - L1_Mus2 LINE L1 0 6566 6306 4 1166 2241 392 69 44 chr1 76281858 76282858 -120912574 + FordPrefect DNA Tip100 362 1369 -314 4 1166 255 229 14 0 chr1 76282876 76282946 -120912486 - Lx9 LINE L1 -4 7640 7570 4 1166 440 391 25 14 chr1 76282964 76283244 -120912188 + FordPrefect DNA Tip100 1367 1649 -34 4 145 332 343 0 0 chr1 76283859 76283958 -120911474 + L2b LINE L2 3277 3375 0 4 1167 2301 65 13 3 chr1 76284266 76284620 -120910812 + L1_Mus1 LINE L1 6251 6567 0 4 1167 893 279 50 25 chr1 76284650 76284933 -120910499 - Lx8 LINE L1 -146 7327 7038 4 1167 312 330 80 42 chr1 76284982 76285194 -120910238 - L2a LINE L2 -1 3425 3206 4 1167 292 321 27 0 chr1 76285380 76285492 -120909940 + ERVL-int LTR ERVL 2068 2182 -3575 4 1167 2065 130 6 58 chr1 76285861 76286205 -120909227 - ORR1A3 LTR MaLR 0 326 1 4 1167 2507 191 87 26 chr1 76286253 76286781 -120908651 - RLTR20B2 LTR ERVK 0 560 1 4 1167 886 235 24 19 chr1 76286963 76287171 -120908261 + B3 SINE B2 1 209 -7 4 1167 571 270 0 26 chr1 76287777 76287929 -120907503 - B1_Mur1 SINE Alu -1 148 1 4 1167 188 0 0 69 chr1 76288269 76288298 -120907134 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1167 317 232 190 10 chr1 76288351 76288451 -120906981 - PB1 SINE Alu -2 125 8 4 1167 1567 36 0 0 chr1 76288604 76288797 -120906635 + L1Md_F2 LINE L1 6378 6570 -12 4 1167 253 321 77 21 chr1 76288834 76288977 -120906455 - L3 LINE CR1 -217 4272 4122 4 1167 189 214 0 0 chr1 76289192 76289234 -120906198 + CT-rich Low_complexity Low_complexity 2 43 0 4 1167 430 310 18 0 chr1 76289248 76289361 -120906071 - PB1D10 SINE Alu -2 115 1 4 1167 22 56 0 0 chr1 76289530 76289566 -120905866 + AT_rich Low_complexity Low_complexity 1 36 0 4 1167 1523 185 93 34 chr1 76289794 76290147 -120905285 + ORR1D1 LTR MaLR 1 374 0 4 1167 262 300 33 22 chr1 76290184 76290276 -120905156 - MER5A1 DNA MER1_type -10 156 64 4 1167 792 273 66 12 chr1 76290600 76290856 -120904576 - LTR86B1 LTR ERVL 0 493 224 4 1167 419 319 101 21 chr1 76291810 76291999 -120903433 + MIR SINE MIR 12 215 -47 4 1167 222 288 14 14 chr1 76292161 76292235 -120903197 + CT-rich Low_complexity Low_complexity 4 77 0 4 1167 2939 25 0 6 chr1 76292425 76292791 -120902641 - L1Md_F3 LINE L1 -579 6005 5642 4 1167 3128 32 3 3 chr1 76292791 76293169 -120902263 + L1Md_F3 LINE L1 6206 6583 -1 4 1167 193 53 25 50 chr1 76294361 76294401 -120901031 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 4 1167 944 156 0 11 chr1 76294877 76295058 -120900374 + GA-rich Low_complexity Low_complexity 2 180 0 4 1167 449 277 18 0 chr1 76296127 76296239 -120899193 + Lx8 LINE L1 7111 7224 -249 4 1167 24 0 0 0 chr1 76296419 76296443 -120898989 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 1938 199 57 25 chr1 76296683 76297084 -120898348 - MTC LTR MaLR 0 421 8 4 1167 669 244 7 0 chr1 76297625 76297760 -120897672 + ID_B1 SINE B4 1 136 -88 4 1167 1416 226 189 24 chr1 76297762 76298260 -120897172 + RMER4B LTR ERVK 1 580 -5 4 1167 320 280 13 0 chr1 76298280 76298355 -120897077 + ID_B1 SINE B4 133 208 -16 4 1167 1790 196 60 19 chr1 76298377 76298746 -120896686 + ORR1C2 LTR MaLR 1 384 0 4 1167 214 328 0 0 chr1 76298771 76298829 -120896603 + CT-rich Low_complexity Low_complexity 4 61 0 4 1167 189 256 112 82 chr1 76298974 76299072 -120896360 - MIRb SINE MIR -125 143 43 4 1167 500 302 23 12 chr1 76299109 76299280 -120896152 - MLT1D LTR MaLR -8 497 325 4 1167 770 0 11 0 chr1 76299283 76299373 -120896059 + (TTTTA)n Simple_repeat Simple_repeat 2 92 0 4 1167 435 125 0 0 chr1 76299548 76299620 -120895812 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1167 846 281 60 45 chr1 76299623 76299685 -120895747 - B4 SINE B4 -11 281 215 4 1167 186 43 0 0 chr1 76299685 76299708 -120895724 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1167 846 281 60 45 chr1 76299708 76299910 -120895522 - B4 SINE B4 -78 214 13 4 1167 243 0 0 0 chr1 76300940 76300967 -120894465 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1167 1263 27 0 0 chr1 76301128 76301274 -120894158 - B1_Mm SINE Alu 0 147 2 4 1167 22 35 0 0 chr1 76301712 76301741 -120893691 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 2036 153 0 9 chr1 76301783 76302112 -120893320 - ORR1A3 LTR MaLR 0 326 1 4 1167 205 200 0 24 chr1 76303502 76303543 -120891889 + L2 LINE L2 1869 1908 -1511 4 1167 24 0 0 0 chr1 76304027 76304051 -120891381 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 693 0 0 0 chr1 76304147 76304224 -120891208 + (TTCTC)n Simple_repeat Simple_repeat 1 77 0 4 1167 427 134 24 0 chr1 76304229 76304311 -120891121 + CT-rich Low_complexity Low_complexity 1 84 0 4 1167 2714 285 58 25 chr1 76304311 76305297 -120890135 - Lx8 LINE L1 -50 7423 6406 4 1167 962 165 129 28 chr1 76305297 76305564 -120889868 - ORR1B2 LTR MaLR -80 298 1 4 1167 549 0 0 0 chr1 76305655 76305716 -120889716 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1167 1335 288 111 16 chr1 76305740 76306506 -120888926 - Lx8 LINE L1 -1546 5927 5090 4 1167 333 276 197 7 chr1 76306702 76306844 -120888588 + L1M5 LINE L1 5494 5662 -462 4 1167 384 22 0 0 chr1 76306880 76306925 -120888507 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1167 886 258 10 16 chr1 76307647 76307840 -120887592 + B3A SINE B2 2 193 -5 4 1167 373 306 30 43 chr1 76307902 76308066 -120887366 - MIR SINE MIR -7 255 94 4 1167 22 0 0 0 chr1 76308423 76308445 -120886987 + AT_rich Low_complexity Low_complexity 1 22 0 4 1167 36534 13 3 7 chr1 76308536 76313945 -120881487 + L1Md_A LINE L1 205 5586 -297 4 1167 8796 15 1 0 chr1 76313945 76314940 -120880492 + L1Md_A LINE L1 5587 6582 0 4 1167 36534 10 1 0 chr1 76314940 76314963 -120880469 + L1Md_A LINE L1 5587 5612 -271 4 1167 1201 61 0 0 chr1 76314991 76315139 -120880293 - B1_Mus1 SINE Alu 0 148 1 4 1167 570 261 0 61 chr1 76315827 76315990 -120879442 - MER2 DNA MER2_type -7 338 186 4 1167 246 32 0 0 chr1 76316549 76316580 -120878852 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1167 283 42 41 20 chr1 76316756 76316805 -120878627 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 1167 231 214 0 0 chr1 76317238 76317294 -120878138 + T-rich Low_complexity Low_complexity 1 56 0 4 1167 202 146 0 24 chr1 76317543 76317585 -120877847 + T-rich Low_complexity Low_complexity 2 42 0 4 1167 399 298 79 0 chr1 76318545 76318659 -120876773 + MIR SINE MIR 128 250 -12 4 1167 412 313 29 47 chr1 76319067 76319345 -120876087 - B4A SINE B4 -18 274 2 4 1167 180 0 0 0 chr1 76320545 76320565 -120874867 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1167 343 0 46 46 chr1 76320951 76321016 -120874416 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 4 1167 273 57 0 0 chr1 76322393 76322428 -120873004 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1167 608 235 53 0 chr1 76322950 76323082 -120872350 - B1_Mur1 SINE Alu -9 140 2 4 1167 1117 152 76 0 chr1 76323502 76323700 -120871732 + URR1A DNA MER1_type 14 226 0 4 1167 637 276 32 24 chr1 76323891 76324107 -120871325 + B3A SINE B2 2 216 0 4 1167 7043 116 3 4 chr1 76325820 76327484 -120867948 - L1_Mus4 LINE L1 -6 6630 4966 4 1167 8535 106 6 2 chr1 76327496 76328817 -120866615 - L1_Mus2 LINE L1 -361 5522 4197 4 1167 6987 81 9 2 chr1 76328818 76329880 -120865552 + L1_Mus2 LINE L1 5480 6566 0 4 1167 1162 82 0 0 chr1 76330421 76330568 -120864864 + B1_Mus1 SINE Alu 1 147 -1 4 1167 3154 279 24 22 chr1 76330687 76331629 -120863803 - RCHARR1 DNA MER1_type -3 971 28 4 1167 418 300 0 10 chr1 76331682 76331783 -120863649 + PB1D10 SINE Alu 12 111 -6 4 1167 415 299 142 72 chr1 76331950 76332019 -120863413 - Lx8 LINE L1 -2 7471 7405 4 1167 2185 93 3 69 chr1 76332019 76332366 -120863066 + ORR1A3 LTR MaLR 1 324 -2 4 1167 415 299 142 72 chr1 76332366 76332739 -120862693 - Lx8 LINE L1 -69 7404 6998 4 1167 639 243 14 22 chr1 76332753 76332892 -120862540 - B4 SINE B4 -149 143 6 4 1167 938 189 77 16 chr1 76333555 76333749 -120861683 + MTC LTR MaLR 5 210 -211 4 1167 544 295 124 19 chr1 76333752 76334018 -120861414 + RMER5 LTR ERV1 43 336 -198 4 1167 961 257 39 0 chr1 76334019 76334276 -120861156 + Lx6 LINE L1 7168 7434 -26 4 1167 840 154 196 11 chr1 76334293 76334477 -120860955 + MTC LTR MaLR 196 413 -8 4 1167 1142 128 22 0 chr1 76335025 76335204 -120860228 + URR1A DNA MER1_type 43 225 -1 4 1167 472 287 27 27 chr1 76335204 76335234 -120860198 - CYRA11_Mm Unknown Y-chromosome -444 173 144 4 1167 424 254 8 42 chr1 76335553 76335672 -120859760 + MLT1A1 LTR MaLR 294 408 0 4 1167 217 274 42 88 chr1 76336727 76336829 -120858603 - MIRm SINE MIR -90 172 83 4 1167 189 0 0 0 chr1 76337877 76337898 -120857534 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1167 288 227 85 85 chr1 76338063 76338145 -120857287 + B1F SINE Alu 61 142 -7 4 1167 200 149 0 21 chr1 76339153 76339201 -120856231 + A-rich Low_complexity Low_complexity 4 50 0 5 1167 372 214 0 0 chr1 76339419 76339531 -120855901 + (TG)n Simple_repeat Simple_repeat 2 113 0 5 1167 564 262 28 21 chr1 76339533 76339677 -120855755 + RSINE1 SINE B4 5 149 -16 5 1167 241 250 0 0 chr1 76342849 76342901 -120852531 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 1167 270 207 0 94 chr1 76343038 76343102 -120852330 + L2 LINE L2 2396 2453 -966 5 1167 401 341 62 0 chr1 76343363 76343492 -120851940 - MLT1A0 LTR MaLR -223 142 6 5 1167 239 246 18 0 chr1 76343568 76343625 -120851807 + L2 LINE L2 2686 2743 -676 5 1167 21 0 0 0 chr1 76343868 76343889 -120851543 + AT_rich Low_complexity Low_complexity 1 21 0 5 1167 744 94 0 0 chr1 76344665 76344771 -120850661 + (TC)n Simple_repeat Simple_repeat 2 107 0 5 1167 1449 194 95 62 chr1 76345264 76345621 -120849811 - ORR1D1 LTR MaLR -5 369 1 5 1167 408 55 0 0 chr1 76345934 76345989 -120849443 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1167 362 38 0 19 chr1 76345989 76346042 -120849390 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1167 5279 168 51 9 chr1 76346050 76347903 -120847529 + Lx7 LINE L1 293 2224 -3656 5 1167 34013 46 0 3 chr1 76347902 76353286 -120842146 + L1Md_T LINE L1 126 5589 -297 5 1167 8441 34 0 0 chr1 76353286 76354282 -120841150 + L1Md_T LINE L1 5590 6585 0 5 1167 201 39 0 0 chr1 76354291 76354317 -120841115 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1167 1951 144 38 13 chr1 76354317 76354690 -120840742 + Lx7 LINE L1 2209 2590 -3290 5 1167 7349 187 62 45 chr1 76354687 76358036 -120837396 + Lx7 LINE L1 4343 7694 -2 5 1167 1005 297 52 102 chr1 76360360 76360499 -120834933 + MT2A LTR ERVL 5 127 -406 5 1167 2383 37 17 7 chr1 76360499 76360798 -120834634 - L1Md_F3 LINE L1 -2 6582 6281 5 1167 1005 297 52 102 chr1 76360798 76361214 -120834218 + MT2A LTR ERVL 128 532 -1 5 1167 2776 287 87 19 chr1 76361276 76362468 -120832964 + MERVL_2A-int LTR ERVL 91 1363 -4398 5 1167 475 169 0 101 chr1 76362491 76362577 -120832855 + MTE-int LTR MaLR 92 168 -1412 5 1167 213 39 0 0 chr1 76362577 76362603 -120832829 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 5 1167 475 169 0 101 chr1 76362603 76362615 -120832817 + MTE-int LTR MaLR 169 180 -1400 5 1167 261 0 0 0 chr1 76363167 76363196 -120832236 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1167 231 311 123 0 chr1 76363343 76363465 -120831967 + MER5A1 DNA MER1_type 18 154 -12 5 1167 237 65 0 0 chr1 76363526 76363557 -120831875 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1167 186 182 43 64 chr1 76364602 76364649 -120830783 + L3b LINE CR1 278 323 -159 5 1167 552 267 128 0 chr1 76367010 76367197 -120828235 + B3 SINE B2 2 212 -4 5 1167 874 305 104 63 chr1 76367203 76367693 -120827739 - MER82 DNA MER2_type -52 601 92 5 1167 986 232 51 57 chr1 76367944 76368296 -120827136 - RLTR15 LTR ERVK -9 350 1 5 1167 529 248 67 56 chr1 76368843 76369026 -120826406 + MTD LTR MaLR 239 407 -12 5 1167 748 338 22 37 chr1 76369149 76369419 -120826013 + B4A SINE B4 23 288 -4 5 1167 22 0 0 0 chr1 76369472 76369494 -120825938 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 423 324 20 7 chr1 76371064 76371213 -120824219 + LTR16A1 LTR ERVL 283 433 -23 5 1167 193 364 15 0 chr1 76371398 76371464 -120823968 - MIRb SINE MIR -108 160 94 5 1167 482 301 70 53 chr1 76371991 76372275 -120823157 - L1ME3A LINE L1 -324 5849 5561 5 1167 2083 185 61 5 chr1 76373072 76373464 -120821968 - MTC LTR MaLR 0 421 8 5 1167 255 239 73 15 chr1 76373693 76373761 -120821671 - RLTR20A1 LTR ERVK 0 551 480 5 1167 748 297 65 69 chr1 76374091 76374641 -120820791 - L1MC1 LINE L1 -99 6234 5687 5 1167 2618 148 15 9 chr1 76374648 76375106 -120820326 + RMER6B LTR ERVK 1 461 0 5 1167 515 266 126 24 chr1 76375117 76375364 -120820068 - L1MC1 LINE L1 -742 5591 5320 5 1167 33869 62 2 11 chr1 76375360 76381361 -120814071 - L1Md_F3 LINE L1 -13 6571 631 5 1167 482 320 11 0 chr1 76381606 76381787 -120813645 - L1MEc LINE L1 -1990 4329 4147 5 1167 1209 236 138 12 chr1 76381847 76382173 -120813259 - MTEa LTR MaLR -12 367 1 5 1167 387 258 10 40 chr1 76382177 76382278 -120813154 - PB1D10 SINE Alu -18 99 2 5 1167 221 0 35 0 chr1 76382522 76382551 -120812881 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1167 317 291 135 0 chr1 76382556 76382704 -120812728 - L1MEc LINE L1 -2478 3841 3674 5 1167 234 330 68 0 chr1 76382859 76382947 -120812485 - PB1D9 SINE Alu -10 110 17 5 1167 432 0 0 0 chr1 76382950 76382998 -120812434 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1167 235 302 0 31 chr1 76383068 76383133 -120812299 - B4 SINE B4 -16 276 214 5 1167 256 119 34 0 chr1 76383142 76383201 -120812231 + T-rich Low_complexity Low_complexity 3 63 0 5 1167 890 51 0 33 chr1 76383202 76383323 -120812109 - B1_Mus1 SINE Alu 0 148 32 5 1167 424 309 73 7 chr1 76383288 76383438 -120811994 - B4 SINE B4 -27 265 106 5 1167 360 138 0 0 chr1 76383797 76383862 -120811570 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 5 1167 1072 202 70 31 chr1 76384017 76384303 -120811129 + RLTR11A2 LTR ERVK 223 519 -8 5 1167 320 320 187 58 chr1 76384390 76384712 -120810720 - L1MEc LINE L1 -4799 1601 1253 5 1167 612 0 0 0 chr1 76384712 76384780 -120810652 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1167 341 22 22 0 chr1 76384786 76384832 -120810600 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1167 320 320 187 58 chr1 76384832 76385016 -120810416 - L1MEc LINE L1 -5153 1247 1023 5 1167 5553 92 11 5 chr1 76385173 76385971 -120809461 - L1_Mus3 LINE L1 -2 6636 5834 5 1167 675 299 48 6 chr1 76385977 76386307 -120809125 - L1MEc LINE L1 -5544 856 513 5 1167 391 323 112 8 chr1 76386376 76386644 -120808788 - L1MEc LINE L1 -6071 329 34 5 1167 31 0 0 0 chr1 76387426 76387457 -120807975 + AT_rich Low_complexity Low_complexity 1 31 0 5 1167 189 74 0 0 chr1 76389368 76389395 -120806037 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1167 476 100 12 0 chr1 76389659 76389739 -120805693 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1167 21 0 0 0 chr1 76391709 76391730 -120803702 + AT_rich Low_complexity Low_complexity 1 21 0 5 1167 22 0 0 0 chr1 76392150 76392172 -120803260 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 5270 78 15 18 chr1 76392212 76392949 -120802483 - L1Md_F2 LINE L1 0 6582 5898 5 1167 369 0 0 0 chr1 76393896 76393937 -120801495 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1167 423 293 149 0 chr1 76394274 76394482 -120800950 - Lx8 LINE L1 -6 7467 7229 5 1167 490 362 14 18 chr1 76394482 76394704 -120800728 + B4A SINE B4 52 272 -20 5 1167 267 31 0 0 chr1 76394753 76394785 -120800647 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1167 612 259 250 24 chr1 76395431 76395727 -120799705 - MLT1A0 LTR MaLR -2 363 1 5 1167 408 20 0 0 chr1 76395827 76395876 -120799556 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1167 633 296 71 24 chr1 76395883 76396126 -120799306 - B4A SINE B4 -30 262 1 5 1167 382 269 0 0 chr1 76396155 76396233 -120799199 - B4 SINE B4 -213 79 2 5 1167 300 186 0 0 chr1 76396274 76396333 -120799099 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 5 1167 189 0 0 0 chr1 76396335 76396356 -120799076 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1167 332 354 7 52 chr1 76396451 76396606 -120798826 + MIR3 SINE MIR 60 207 -1 5 1167 789 161 43 7 chr1 76396795 76396817 -120798615 - B1_Mus1 SINE Alu 0 148 123 5 1167 183 42 0 0 chr1 76396817 76396841 -120798591 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1167 789 161 43 7 chr1 76396841 76396956 -120798476 - B1_Mus1 SINE Alu -26 122 7 5 1167 430 236 0 136 chr1 76398208 76398355 -120797077 - Lx7 LINE L1 -1687 6009 5883 5 1167 387 318 9 9 chr1 76398355 76398463 -120796969 - B4 SINE B4 -184 108 1 5 1167 22 35 0 0 chr1 76398718 76398747 -120796685 + AT_rich Low_complexity Low_complexity 1 29 0 5 1167 806 303 22 11 chr1 76398795 76399065 -120796367 + B4A SINE B4 2 274 -18 5 1167 404 37 19 0 chr1 76399279 76399333 -120796099 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 5 1167 272 102 20 0 chr1 76400934 76400983 -120794449 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1167 399 89 0 0 chr1 76401146 76401202 -120794230 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1167 233 333 93 8 chr1 76401828 76401946 -120793486 + L2a LINE L2 3299 3426 0 5 1167 576 0 0 0 chr1 76402348 76402412 -120793020 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1167 252 331 219 8 chr1 76402533 76402661 -120792771 + LTR88c LTR Genie? 707 861 -1 5 1167 276 318 92 102 chr1 76403624 76403820 -120791612 - MTEb LTR MaLR -183 196 3 5 1167 183 360 0 0 chr1 76403820 76403870 -120791562 - MIRm SINE MIR -122 154 105 5 1167 889 269 142 24 chr1 76403884 76404223 -120791209 - Lx8 LINE L1 0 7473 7095 5 1167 1477 223 87 9 chr1 76404744 76405079 -120790353 + MTEa LTR MaLR 19 379 0 5 1167 2291 78 7 10 chr1 76405551 76405860 -120789572 - L1_Mus3 LINE L1 -5 6633 6326 5 1167 247 319 42 21 chr1 76406720 76406816 -120788616 + MER5A1 DNA MER1_type 51 148 -18 5 1167 214 140 0 5 chr1 76407764 76407803 -120787629 + MIRc SINE MIR 49 86 -182 5 1167 428 309 10 30 chr1 76407933 76408033 -120787399 + PB1D10 SINE Alu 9 106 -11 5 1167 767 260 68 53 chr1 76408078 76408285 -120787147 + B3 SINE B2 1 210 -6 5 1167 6000 40 0 7 chr1 76408376 76409062 -120786370 + L1Md_F2 LINE L1 5900 6580 -2 5 1167 310 264 42 52 chr1 76409372 76409468 -120785964 + MLT1E1 LTR MaLR 304 398 -256 5 1167 947 262 131 53 chr1 76409500 76409843 -120785589 - ORR1E LTR MaLR 0 370 1 5 1167 487 242 137 47 chr1 76409843 76410054 -120785378 + MLT1E1 LTR MaLR 418 647 -7 5 1167 603 227 84 0 chr1 76410572 76410691 -120784741 - B3 SINE B2 -86 130 2 5 1167 795 307 82 67 chr1 76410735 76411320 -120784112 - L1MC2 LINE L1 -284 6060 5451 5 1167 1918 189 74 6 chr1 76411320 76411671 -120783761 - ORR1C1 LTR MaLR 0 378 4 5 1167 762 318 101 58 chr1 76411671 76411757 -120783675 - L1MC2 LINE L1 -883 5450 5356 5 1167 351 0 0 0 chr1 76411795 76411834 -120783598 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1167 273 272 12 24 chr1 76411846 76411929 -120783503 - L1MC2 LINE L1 -905 5241 5160 5 1167 21 57 0 0 chr1 76412309 76412344 -120783088 + AT_rich Low_complexity Low_complexity 1 35 0 5 1167 24 0 0 0 chr1 76413218 76413242 -120782190 + AT_rich Low_complexity Low_complexity 1 24 0 5 1167 460 212 24 0 chr1 76413607 76413692 -120781740 + MTE2b LTR MaLR 1 87 -292 5 1167 7089 148 26 11 chr1 76413694 76414813 -120780619 - Lx2 LINE L1 0 6997 5862 6 1167 215 31 31 0 chr1 76414821 76414853 -120780579 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 145 833 97 5 0 chr1 76414857 76414986 -120780446 - B1_Mm SINE Alu 0 147 19 6 1168 3758 135 7 2 chr1 76414986 76415563 -120779869 - L1_Mm LINE L1 -15 5868 5289 6 1168 585 267 107 80 chr1 76415567 76415754 -120779678 + MTE2b LTR MaLR 79 270 -109 5 1168 766 265 101 15 chr1 76417590 76417789 -120777643 - B3 SINE B2 0 216 1 6 1168 333 0 0 0 chr1 76418211 76418248 -120777184 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1168 28 0 0 0 chr1 76418641 76418669 -120776763 + AT_rich Low_complexity Low_complexity 1 28 0 6 1168 623 198 2 0 chr1 76418725 76418836 -120776596 - B3 SINE B2 -82 113 1 6 1168 432 0 0 0 chr1 76419378 76419426 -120776006 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1168 537 272 80 52 chr1 76419819 76420032 -120775400 - MER20 DNA MER1_type 0 219 1 6 1168 1217 74 0 7 chr1 76420063 76420212 -120775220 + B1_Mus1 SINE Alu 1 148 0 6 1168 446 270 0 48 chr1 76420337 76420442 -120774990 - MER58A DNA MER1_type -124 100 1 6 1168 189 0 0 0 chr1 76421193 76421214 -120774218 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1168 584 197 122 73 chr1 76421345 76421509 -120773923 - B3A SINE B2 -1 197 26 6 1168 228 420 80 11 chr1 76422099 76422275 -120773157 + LTR16A LTR ERVL 105 292 -159 6 1168 512 257 9 0 chr1 76423400 76423505 -120771927 - B3 SINE B2 -13 203 98 6 1168 237 261 144 98 chr1 76423843 76423975 -120771457 - Tigger10 DNA Tigger -26 1817 1680 6 1168 320 0 25 0 chr1 76424921 76424961 -120770471 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1168 363 145 0 0 chr1 76424961 76425044 -120770388 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 1168 391 113 28 0 chr1 76425124 76425195 -120770237 + (AGGGGG)n Simple_repeat Simple_repeat 2 74 0 6 1168 816 125 0 0 chr1 76426267 76426395 -120769037 + (TA)n Simple_repeat Simple_repeat 2 129 0 6 1168 193 321 148 19 chr1 76428013 76428175 -120767257 - MIRb SINE MIR -64 204 22 6 1168 923 256 98 60 chr1 76428662 76428766 -120766666 + MTD LTR MaLR 5 126 -293 6 1168 4273 70 29 18 chr1 76428766 76429319 -120766113 - L1_Mus3 LINE L1 -4 6634 6076 6 1168 923 256 98 60 chr1 76429319 76429600 -120765832 + MTD LTR MaLR 127 405 -14 6 1168 234 81 0 0 chr1 76432274 76432311 -120763121 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1168 1299 207 38 35 chr1 76432671 76433012 -120762420 - L1MA6 LINE L1 -4 6296 5955 6 1168 601 312 6 60 chr1 76433335 76433502 -120761930 - RSINE1 SINE B4 0 165 8 6 1168 366 272 254 23 chr1 76436401 76436574 -120758858 - MLT1A LTR MaLR -48 326 114 6 1168 1090 61 45 0 chr1 76436682 76436814 -120758618 - B1_Mus2 SINE Alu -9 138 1 6 1168 7234 93 24 3 chr1 76437591 76438594 -120756838 + L1_Mus3 LINE L1 5615 6638 0 6 1168 24 0 0 0 chr1 76438604 76438628 -120756804 + AT_rich Low_complexity Low_complexity 1 24 0 6 1168 1238 232 69 14 chr1 76438884 76438931 -120756501 - MT2A LTR ERVL 0 533 473 6 1168 708 12 0 0 chr1 76438931 76439012 -120756420 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 6 1168 1238 232 69 14 chr1 76439012 76439252 -120756180 - MT2A LTR ERVL -61 472 231 6 1168 1198 246 30 10 chr1 76439327 76439341 -120756091 + RLTR16 LTR ERVK 138 154 -351 6 1168 188 0 74 0 chr1 76439341 76439368 -120756064 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 1168 1198 246 30 10 chr1 76439368 76439653 -120755779 + RLTR16 LTR ERVK 155 442 -63 6 1168 675 201 60 13 chr1 76439757 76439915 -120755517 - MT2A LTR ERVL -161 314 88 6 1168 204 301 82 0 chr1 76439927 76440000 -120755432 + MIR3 SINE MIR 124 202 -6 6 1168 1485 215 74 11 chr1 76442325 76442678 -120752754 + MTD LTR MaLR 1 375 -44 6 1168 216 0 0 0 chr1 76442678 76442702 -120752730 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1168 280 194 65 0 chr1 76442958 76443020 -120752412 - B1F2 SINE Alu -75 74 9 6 1168 266 238 48 0 chr1 76442970 76443033 -120752399 - B4A SINE B4 -146 146 81 6 1168 396 0 0 0 chr1 76443073 76443117 -120752315 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1168 711 273 111 0 chr1 76444079 76444277 -120751155 + MER58A DNA MER1_type 5 224 0 6 1168 253 293 85 66 chr1 76444379 76444485 -120750947 - L2b LINE L2 -5 3370 3263 6 1168 671 292 119 36 chr1 76444565 76444842 -120750590 - ORR1E LTR MaLR -57 302 3 6 1168 257 317 69 10 chr1 76445289 76445391 -120750041 - L3 LINE CR1 -64 4425 4318 6 1168 253 303 0 0 chr1 76445418 76445484 -120749948 - L2c LINE L2 0 3387 3322 6 1168 22 0 0 0 chr1 76445635 76445657 -120749775 + AT_rich Low_complexity Low_complexity 1 22 0 6 1168 188 182 0 22 chr1 76445686 76445731 -120749701 + CT-rich Low_complexity Low_complexity 1 44 0 6 1168 1623 231 47 97 chr1 76445760 76445861 -120749571 - RMER5 LTR ERV1 0 534 452 6 1168 782 150 14 14 chr1 76445861 76446003 -120749429 - B1_Mur4 SINE Alu -8 142 1 6 1168 1623 231 47 97 chr1 76446003 76446437 -120748995 - RMER5 LTR ERV1 -83 451 26 6 1168 370 341 60 34 chr1 76446607 76446846 -120748586 - L1M5 LINE L1 -2082 5800 5563 6 1168 496 322 23 33 chr1 76447287 76447502 -120747930 + MLT1A0 LTR MaLR 153 365 0 6 1168 2768 253 86 34 chr1 76447747 76448753 -120746679 - Lx9 LINE L1 -2 7642 6585 6 1168 275 309 114 40 chr1 76449070 76449245 -120746187 + MIR SINE MIR 45 232 -30 6 1168 388 0 19 19 chr1 76451457 76451510 -120743922 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 6 1168 402 114 0 0 chr1 76451584 76451654 -120743778 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1168 1704 175 19 6 chr1 76451813 76452124 -120743308 + Lx LINE L1 6339 6653 -1 6 1168 186 43 0 0 chr1 76452162 76452185 -120743247 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1168 489 207 64 133 chr1 76452188 76452361 -120743071 - ORR1D1 LTR MaLR -48 326 166 6 1168 714 279 37 62 chr1 76452354 76452637 -120742795 - ORR1D1 LTR MaLR -87 283 1 6 1168 231 314 77 19 chr1 76452863 76452967 -120742465 + MER5A1 DNA MER1_type 4 113 -53 6 1168 288 279 15 44 chr1 76453020 76453155 -120742277 - L1MA5 LINE L1 -3 6297 6167 6 1168 477 50 0 0 chr1 76454207 76454267 -120741165 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 6 1168 537 296 64 4 chr1 76454494 76454728 -120740704 - Charlie5 DNA MER1_type -134 2490 2243 6 1168 323 333 0 8 chr1 76454737 76454855 -120740577 - Charlie5 DNA MER1_type -2502 122 6 6 1168 249 108 0 0 chr1 76455477 76455514 -120739918 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 6 1168 500 56 0 14 chr1 76455562 76455635 -120739797 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1168 33742 36 0 0 chr1 76456569 76462000 -120733432 + L1Md_T LINE L1 62 5589 -297 6 1168 9032 5 0 0 chr1 76462000 76462996 -120732436 + L1Md_T LINE L1 5590 6585 0 6 1168 812 282 24 12 chr1 76463010 76463258 -120732174 + MER2 DNA MER2_type 95 345 0 6 1168 213 308 56 20 chr1 76463768 76463867 -120731565 + MIR SINE MIR 152 263 -5 6 1168 221 302 0 0 chr1 76465679 76465732 -120729700 + polypyrimidine Low_complexity Low_complexity 2 54 0 6 1168 237 341 161 27 chr1 76466558 76466702 -120728730 + LTR83 LTR ERVL 76 247 -533 6 1168 351 0 0 0 chr1 76466702 76466741 -120728691 + (TTA)n Simple_repeat Simple_repeat 3 41 0 6 1168 237 341 161 27 chr1 76466741 76466819 -120728613 + LTR83 LTR ERVL 248 327 -453 6 1168 6585 33 5 1 chr1 76466855 76467646 -120727786 - L1Md_F2 LINE L1 -2 6580 5787 6 1168 264 30 0 0 chr1 76467819 76467852 -120727580 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 1168 365 336 0 0 chr1 76467861 76467989 -120727443 + LTR83 LTR ERVL 550 677 -103 6 1168 28 48 0 0 chr1 76469222 76469264 -120726168 + AT_rich Low_complexity Low_complexity 1 42 0 6 1168 300 111 0 0 chr1 76470074 76470119 -120725313 + (TATG)n Simple_repeat Simple_repeat 2 46 0 6 1168 1078 277 101 8 chr1 76470453 76470831 -120724601 + MTD LTR MaLR 5 417 -2 6 1168 342 0 0 0 chr1 76471626 76471664 -120723768 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1168 223 262 141 16 chr1 76473042 76473170 -120722262 - L2a LINE L2 -75 3351 3208 6 1168 471 87 0 0 chr1 76473294 76473363 -120722069 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1168 387 0 0 0 chr1 76473363 76473405 -120722027 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1168 4020 79 4 0 chr1 76473449 76473970 -120721462 + L1_Mus3 LINE L1 6107 6629 -9 6 1168 238 309 46 54 chr1 76474019 76474149 -120721283 - L2a LINE L2 -434 2985 2857 6 1168 1870 194 58 52 chr1 76474149 76474372 -120721060 - RMER4B LTR ERVK 0 466 281 6 1168 437 34 17 0 chr1 76474372 76474431 -120721001 + (CCAA)n Simple_repeat Simple_repeat 1 60 0 6 1168 1870 155 89 3 chr1 76474431 76474694 -120720738 - RMER4B LTR ERVK -297 288 2 6 1168 371 360 39 19 chr1 76474857 76475064 -120720368 - L2a LINE L2 -779 2640 2430 6 1168 2077 122 0 6 chr1 76475343 76475782 -120719650 - L1VL4 LINE L1 -4457 1426 992 6 1168 7552 77 2 3 chr1 76475784 76477684 -120717748 + L1_Mus1 LINE L1 4793 6567 0 6 1168 639 234 49 66 chr1 76478165 76478348 -120717084 - B3A SINE B2 -18 180 1 6 1168 660 324 86 9 chr1 76478380 76478601 -120716831 - B4A SINE B4 -6 286 49 6 1168 291 85 0 0 chr1 76478852 76478899 -120716533 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1168 218 371 72 48 chr1 76479380 76479629 -120715803 + MIR SINE MIR 8 262 0 6 1168 297 0 0 0 chr1 76480047 76480080 -120715352 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1168 330 135 22 22 chr1 76481612 76481703 -120713729 + (CAAA)n Simple_repeat Simple_repeat 1 91 0 6 1168 261 271 14 41 chr1 76481719 76481758 -120713674 + ORR1B1-int LTR MaLR 611 645 -864 6 1168 812 164 0 29 chr1 76481758 76481896 -120713536 + B1_Mur3 SINE Alu 1 134 -15 6 1168 1034 125 6 0 chr1 76481913 76482089 -120713343 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 6 1168 536 254 26 9 chr1 76482539 76482654 -120712778 - PB1 SINE Alu 0 127 11 6 1168 268 24 49 0 chr1 76483005 76483046 -120712386 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1168 387 180 240 0 chr1 76484209 76484309 -120711123 + URR1A DNA MER1_type 7 130 -96 6 1168 2170 164 45 43 chr1 76484388 76484872 -120710560 - Lx4B LINE L1 0 7058 6574 6 1168 35 54 0 0 chr1 76485030 76485086 -120710346 + AT_rich Low_complexity Low_complexity 1 56 0 6 1168 553 92 103 0 chr1 76485086 76485173 -120710259 + MTC LTR MaLR 67 162 -259 7 1168 303 28 0 0 chr1 76485359 76485395 -120710037 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 7 1168 1687 151 43 4 chr1 76485499 76485779 -120709653 + MTC LTR MaLR 1 291 -130 7 1168 483 273 121 40 chr1 76485769 76485918 -120709514 - ORR1E LTR MaLR -196 163 3 7 1168 207 0 0 0 chr1 76487274 76487297 -120708135 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1168 379 283 62 57 chr1 76488232 76488442 -120706990 - HAL1-3A_ME LINE L1 -704 2154 1944 7 1168 1179 253 45 44 chr1 76489024 76489420 -120706012 - MTE2a LTR MaLR -9 410 6 7 1168 318 254 0 0 chr1 76489851 76489914 -120705518 + B3A SINE B2 4 66 -132 7 1168 28 29 0 0 chr1 76490800 76490835 -120704597 + AT_rich Low_complexity Low_complexity 1 35 0 7 1168 211 297 136 14 chr1 76492161 76492301 -120703131 + MIRb SINE MIR 88 244 -24 7 1168 268 60 39 20 chr1 76492543 76492594 -120702838 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 7 1168 566 200 0 0 chr1 76492924 76493019 -120702413 + MTD LTR MaLR 14 108 -311 7 1168 392 171 73 45 chr1 76493008 76493118 -120702314 - MER58B DNA MER1_type -138 203 91 7 1168 522 0 0 0 chr1 76493118 76493176 -120702256 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1168 223 313 10 10 chr1 76493471 76493571 -120701861 + (CATATA)n Simple_repeat Simple_repeat 6 105 0 7 1168 282 160 0 0 chr1 76494739 76494789 -120700643 + CT-rich Low_complexity Low_complexity 1 50 0 7 1168 611 262 127 50 chr1 76495057 76495238 -120700194 - B3 SINE B2 -4 212 18 7 1168 634 262 155 0 chr1 76495661 76495720 -120699712 + ID SINE ID 2 82 -142 7 1168 270 0 0 0 chr1 76495720 76495750 -120699682 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 7 1168 634 262 155 0 chr1 76495750 76495877 -120699555 + ID_B1 SINE B4 83 216 -8 7 1168 453 36 0 0 chr1 76495920 76495975 -120699457 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 7 1168 333 0 0 0 chr1 76495975 76496012 -120699420 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1168 532 235 10 0 chr1 76496015 76496113 -120699319 - RSINE1 SINE B4 -20 145 47 7 1168 1238 292 75 24 chr1 76497121 76497788 -120697644 - L1MA6 LINE L1 0 6300 5600 7 1168 521 139 9 0 chr1 76497899 76498007 -120697425 + Lx9 LINE L1 7536 7644 0 7 1168 475 254 162 0 chr1 76498117 76498259 -120697173 - B4A SINE B4 -7 285 121 7 1168 597 244 76 75 chr1 76498456 76498709 -120696723 - L1MA6 LINE L1 -819 5481 5251 7 1168 440 296 19 56 chr1 76498709 76498870 -120696562 - RSINE1 SINE B4 -10 155 1 7 1168 597 237 90 86 chr1 76498870 76499127 -120696305 - L1MA6 LINE L1 -893 5250 4965 7 1168 216 179 0 0 chr1 76499183 76499222 -120696210 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1168 685 288 131 17 chr1 76499233 76499752 -120695680 - L1MA6 LINE L1 -1364 4779 4202 7 1168 316 326 0 0 chr1 76499822 76499911 -120695521 + Lx7 LINE L1 6590 6678 -1018 7 1168 395 279 47 26 chr1 76500005 76500147 -120695285 - B4A SINE B4 -145 147 1 1 1168 1885 189 55 53 chr1 76500795 76501152 -120694280 + MTC LTR MaLR 3 377 -44 2 1168 273 57 0 0 chr1 76501152 76501187 -120694245 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1168 874 180 0 0 chr1 76501187 76501326 -120694106 - B1_Mur4 SINE Alu -10 140 2 4 1168 1885 189 55 53 chr1 76501326 76501385 -120694047 + MTC LTR MaLR 378 420 -1 2 1168 183 352 95 0 chr1 76502469 76502574 -120692858 + MIRb SINE MIR 19 133 -135 5 1168 223 305 0 24 chr1 76503102 76503186 -120692246 + GA-rich Low_complexity Low_complexity 1 82 0 6 1168 516 32 0 0 chr1 76505878 76505940 -120689492 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1168 521 290 7 30 chr1 76506683 76506818 -120688614 - B3 SINE B2 -83 133 2 8 1168 29 70 0 0 chr1 76506964 76507021 -120688411 + AT_rich Low_complexity Low_complexity 1 57 0 9 1168 1303 175 80 227 chr1 76507164 76507614 -120687818 + ORR1C2 LTR MaLR 1 384 0 1 1168 890 175 0 6 chr1 76507659 76507837 -120687595 + CT-rich Low_complexity Low_complexity 2 178 0 1 1168 1099 70 14 0 chr1 76507854 76507996 -120687436 - B1_Mus1 SINE Alu 0 148 5 1 1168 465 333 50 53 chr1 76508199 76508500 -120686932 + MLT1C LTR MaLR 161 460 -7 1 1168 272 365 52 21 chr1 76508880 76509073 -120686359 + MIR SINE MIR 19 217 -45 1 1168 633 318 53 21 chr1 76509226 76509574 -120685858 - MLT2B4 LTR ERVL 0 414 66 1 1168 277 320 28 28 chr1 76509983 76510089 -120685343 + MIRm SINE MIR 167 272 -4 1 1168 333 0 0 0 chr1 76510450 76510487 -120684945 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1168 261 0 0 0 chr1 76510753 76510782 -120684650 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1168 235 132 26 0 chr1 76510794 76510832 -120684600 + CT-rich Low_complexity Low_complexity 1 39 0 1 1168 396 0 0 0 chr1 76510833 76510877 -120684555 + (CTG)n Simple_repeat Simple_repeat 2 45 0 2 1168 675 162 7 14 chr1 76510875 76511019 -120684413 + CT-rich Low_complexity Low_complexity 3 145 0 2 1168 2012 280 55 5 chr1 76511042 76511602 -120683830 - Lx5 LINE L1 -8 7042 6455 2 1168 1361 260 21 27 chr1 76511692 76512064 -120683368 + ORR1D2 LTR MaLR 1 370 0 2 1168 300 374 0 0 chr1 76512144 76512259 -120683173 - LTR33B LTR ERVL -10 493 379 2 1168 6986 82 16 1 chr1 76512576 76513572 -120681860 - L1_Mus3 LINE L1 -6 6632 5622 2 1168 14338 121 14 9 chr1 76513566 76516547 -120678885 - L1VL4 LINE L1 -322 3495 512 2 1168 720 314 78 80 chr1 76516652 76516730 -120678702 - MLT1C LTR MaLR 0 467 381 2 1168 1218 176 18 5 chr1 76516730 76516952 -120678480 + URR1B DNA MER1_type 1 225 0 2 1168 720 314 78 80 chr1 76516952 76517334 -120678098 - MLT1C LTR MaLR -87 380 8 2 1168 201 39 0 0 chr1 76520526 76520552 -120674880 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1168 421 306 50 46 chr1 76521011 76521251 -120674181 - Helitron2Na_Mam RC Helitron? -48 276 36 3 1168 242 196 0 0 chr1 76521387 76521438 -120673994 + CT-rich Low_complexity Low_complexity 2 52 0 3 1168 22 70 0 0 chr1 76521586 76521629 -120673803 + AT_rich Low_complexity Low_complexity 1 43 0 3 1168 3044 153 22 4 chr1 76521629 76522185 -120673247 - L1_Mm LINE L1 -123 5760 5195 3 1168 5894 95 27 20 chr1 76522181 76522279 -120673153 + Lx LINE L1 5711 5797 -857 3 1168 1041 106 0 0 chr1 76522279 76522421 -120673011 + B1_Mus2 SINE Alu 1 142 -5 3 1168 5894 95 27 20 chr1 76522421 76523253 -120672179 + Lx LINE L1 5798 6646 -8 3 1168 24 53 0 0 chr1 76523264 76523302 -120672130 + AT_rich Low_complexity Low_complexity 1 38 0 3 1168 779 297 61 9 chr1 76523302 76523516 -120671916 + B4 SINE B4 1 225 -67 3 1168 204 139 0 27 chr1 76523520 76523557 -120671875 + A-rich Low_complexity Low_complexity 2 37 0 3 1168 206 261 0 0 chr1 76523657 76523703 -120671729 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 3 1168 429 246 20 21 chr1 76523944 76524061 -120671371 + B1F SINE Alu 4 119 -1 4 1168 387 296 36 18 chr1 76524372 76524482 -120670950 - PB1 SINE Alu -2 125 14 4 1168 672 277 90 35 chr1 76525236 76525580 -120669852 - MLT1A0 LTR MaLR -2 363 1 4 1168 305 348 35 0 chr1 76527928 76528069 -120667363 + Lx8 LINE L1 7084 7229 -244 4 1168 230 310 71 12 chr1 76528500 76528585 -120666847 - LTR9 LTR ERV1 -449 163 74 4 1168 264 346 49 37 chr1 76528752 76528914 -120666518 + Lx8 LINE L1 6961 7124 -349 4 1168 1264 304 80 56 chr1 76529104 76529760 -120665672 + L1MC3 LINE L1 6603 7236 -549 4 1168 844 184 168 0 chr1 76529760 76529950 -120665482 - URR1B DNA MER1_type -3 222 1 4 1168 1264 301 84 54 chr1 76529950 76530326 -120665106 + L1MC3 LINE L1 7237 7610 -175 4 1168 1099 128 152 10 chr1 76531136 76531333 -120664099 + MTC LTR MaLR 1 225 -196 4 1168 291 316 8 57 chr1 76531376 76531500 -120663932 - MER45A DNA Tip100 -10 168 51 4 1168 195 319 0 0 chr1 76531561 76531608 -120663824 + MIRb SINE MIR 56 102 -166 5 1168 241 309 112 37 chr1 76533032 76533247 -120662185 + L2a LINE L2 2055 2285 -1134 5 1168 338 348 67 0 chr1 76533317 76533452 -120661980 + MLT1C LTR MaLR 1 144 -323 5 1168 728 246 92 25 chr1 76533707 76533903 -120661529 - B3 SINE B2 -6 210 2 5 1168 228 324 99 78 chr1 76533967 76534251 -120661181 + L2a LINE L2 2347 2636 -783 5 1168 971 319 65 2 chr1 76534265 76534758 -120660674 + L1MB4 LINE L1 5526 6049 -131 5 1168 692 330 90 27 chr1 76534760 76535093 -120660339 - ORR1E LTR MaLR -5 354 1 5 1168 248 278 37 22 chr1 76535094 76535230 -120660202 + L1MB4 LINE L1 6041 6178 -2 5 1168 463 378 71 32 chr1 76535241 76535651 -120659781 + L2a LINE L2 2657 3082 -337 5 1168 296 340 104 35 chr1 76535739 76535940 -120659492 + L2a LINE L2 3209 3423 -3 5 1168 335 237 0 9 chr1 76536356 76536471 -120658961 + (TATATG)n Simple_repeat Simple_repeat 4 117 0 5 1168 1093 274 152 25 chr1 76536492 76536743 -120658689 - MLT2B4 LTR ERVL -62 494 204 5 1168 249 33 0 0 chr1 76536743 76536773 -120658659 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 1168 1093 274 152 25 chr1 76536773 76536955 -120658477 - MLT2B4 LTR ERVL -353 203 6 5 1168 405 0 0 0 chr1 76537503 76537548 -120657884 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1168 21 57 0 0 chr1 76538241 76538276 -120657156 + AT_rich Low_complexity Low_complexity 1 35 0 6 1168 821 289 132 8 chr1 76540560 76540818 -120654614 - B4A SINE B4 -2 290 1 6 1168 378 0 0 0 chr1 76541878 76541920 -120653512 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1168 621 346 51 61 chr1 76541942 76542237 -120653195 - B4A SINE B4 0 292 1 6 1168 228 324 96 71 chr1 76542239 76542478 -120652954 - LTR81B LTR ERV1? -1112 281 37 6 1168 468 0 0 0 chr1 76542497 76542549 -120652883 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1168 920 171 136 0 chr1 76542733 76542932 -120652500 + URR1A DNA MER1_type 1 226 0 6 1168 741 274 35 45 chr1 76542970 76543207 -120652225 + B4 SINE B4 3 234 -58 6 1168 558 0 0 0 chr1 76543207 76543269 -120652163 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1168 741 274 35 45 chr1 76543269 76543318 -120652114 + B4 SINE B4 235 286 -6 6 1168 210 118 0 0 chr1 76543351 76543385 -120652047 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1168 200 347 142 58 chr1 76543580 76543840 -120651592 - L2b LINE L2 -15 3372 3091 7 1168 387 0 0 0 chr1 76543850 76543893 -120651539 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1168 227 79 0 26 chr1 76544357 76544396 -120651036 + (TCC)n Simple_repeat Simple_repeat 3 40 0 7 1168 180 152 0 0 chr1 76544556 76544589 -120650843 + GA-rich Low_complexity Low_complexity 3 35 0 7 1168 313 297 80 26 chr1 76544633 76544976 -120650456 - L1M5 LINE L1 -2533 3607 3244 7 1168 320 316 83 22 chr1 76544980 76545161 -120650271 - L1MD LINE L1 -3026 3120 2929 7 1168 336 274 0 31 chr1 76545203 76545301 -120650131 - PB1D10 SINE Alu -1 116 22 7 1168 507 296 25 19 chr1 76545320 76545482 -120649950 - MER3 DNA MER1_type 0 209 47 7 1168 209 138 171 71 chr1 76545728 76545798 -120649634 - MIRb SINE MIR 0 268 192 7 1168 183 80 0 0 chr1 76545847 76545872 -120649560 + (CATA)n Simple_repeat Simple_repeat 3 27 0 7 1169 304 349 68 0 chr1 76546257 76546403 -120649029 - L1ME3B LINE L1 -347 5893 5738 8 1169 318 351 9 9 chr1 76546961 76547073 -120648359 - L1ME3B LINE L1 -1091 5055 4944 8 1169 279 140 0 0 chr1 76547302 76547352 -120648080 + (T)n Simple_repeat Simple_repeat 1 50 0 8 1169 27 0 0 0 chr1 76548853 76548880 -120646552 + AT_rich Low_complexity Low_complexity 1 27 0 8 1169 295 281 124 19 chr1 76549646 76549751 -120645681 + B3A SINE B2 100 215 -1 8 1169 1001 273 16 28 chr1 76550596 76550913 -120644519 - Lx8 LINE L1 -246 7227 6915 8 1169 228 278 56 0 chr1 76550919 76551009 -120644423 + Lx9 LINE L1 7420 7514 -130 8 1169 506 230 0 13 chr1 76551009 76551163 -120644269 + (CATA)n Simple_repeat Simple_repeat 4 155 0 8 1169 21 71 0 0 chr1 76551381 76551423 -120644009 + AT_rich Low_complexity Low_complexity 1 42 0 8 1169 300 91 0 0 chr1 76552690 76552734 -120642698 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1169 2484 41 81 19 chr1 76552734 76553054 -120642378 + ORR1A1 LTR MaLR 5 344 -2 8 1169 13244 68 15 2 chr1 76553056 76554825 -120640607 + ORR1A1-int LTR MaLR 1 1792 0 8 1169 2784 64 3 0 chr1 76554825 76555170 -120640262 + ORR1A1 LTR MaLR 1 346 0 8 1169 715 323 12 12 chr1 76555170 76555339 -120640093 - B3A SINE B2 -29 169 1 9 1169 270 0 0 0 chr1 76555347 76555377 -120640055 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1169 271 320 29 0 chr1 76555522 76555625 -120639807 - MER2 DNA MER2_type -123 222 117 9 1169 759 67 233 0 chr1 76556299 76556419 -120639013 + B1_Mus1 SINE Alu 1 148 0 9 1169 591 271 109 62 chr1 76558951 76559226 -120636206 + MLT1C LTR MaLR 177 464 -3 9 1169 237 264 28 0 chr1 76559297 76559369 -120636063 + A-rich Low_complexity Low_complexity 5 78 0 9 1169 189 0 0 0 chr1 76559742 76559763 -120635669 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 9 1169 288 250 11 33 chr1 76562488 76562579 -120632853 + GA-rich Low_complexity Low_complexity 3 91 0 9 1169 471 60 0 0 chr1 76562741 76562808 -120632624 + (GA)n Simple_repeat Simple_repeat 2 68 0 9 1169 2419 53 3 6 chr1 76562823 76563148 -120632284 - L1_Mus2 LINE L1 -560 6006 5683 9 1169 4884 72 0 0 chr1 76563151 76563777 -120631655 + L1_Mus2 LINE L1 5940 6565 -1 9 1169 1799 276 54 22 chr1 76563806 76564346 -120631086 + Lx6 LINE L1 6904 7460 0 1 1169 771 306 115 16 chr1 76564629 76564951 -120630481 + MLT2C2 LTR ERVL 1 354 -110 1 1169 636 312 114 59 chr1 76564976 76565317 -120630115 - MLT2B1 LTR ERVL -2 518 159 1 1169 427 303 132 8 chr1 76565325 76565568 -120629864 + L1MC4 LINE L1 957 1229 -4986 1 1169 296 274 10 10 chr1 76565606 76565709 -120629723 + L1MC4 LINE L1 3577 3679 -2535 1 1169 397 321 81 85 chr1 76565838 76566355 -120629077 + L1MC LINE L1 4670 5184 -962 1 1169 282 116 0 0 chr1 76566642 76566685 -120628747 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1169 337 281 11 22 chr1 76566686 76566777 -120628655 - RSINE1 SINE B4 0 165 76 1 1169 255 61 0 0 chr1 76566794 76566827 -120628605 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1169 265 286 9 101 chr1 76567477 76567586 -120627846 - ID_B1 SINE B4 -77 147 49 1 1169 286 329 24 0 chr1 76568016 76568101 -120627331 + B4 SINE B4 124 210 -82 1 1169 450 0 0 0 chr1 76568289 76568339 -120627093 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1169 873 178 0 22 chr1 76568416 76568600 -120626832 - L1Md_F LINE L1 -6282 237 58 1 1169 1618 26 0 0 chr1 76568600 76568792 -120626640 + L1Md_A LINE L1 6391 6582 0 1 1169 252 0 0 0 chr1 76569040 76569068 -120626364 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1169 764 60 10 0 chr1 76569068 76569168 -120626264 - B1_Mus2 SINE Alu 0 147 47 1 1169 348 176 0 42 chr1 76569112 76569183 -120626249 - RLTR25B LTR ERVK -526 502 435 1 1169 260 217 0 115 chr1 76569125 76569203 -120626229 - 4.5SRNA scRNA scRNA -8 86 18 1 1169 248 237 0 21 chr1 76569364 76569459 -120625973 + (CATA)n Simple_repeat Simple_repeat 2 94 0 1 1169 380 225 148 38 chr1 76569471 76569610 -120625822 - PB1D7 SINE Alu 0 147 8 1 1169 411 318 88 19 chr1 76570096 76570311 -120625121 - Lx8 LINE L1 -352 7121 6892 1 1169 774 242 103 0 chr1 76570743 76570937 -120624495 - B3 SINE B2 -2 214 1 1 1169 338 291 61 107 chr1 76571160 76571422 -120624010 - L1MEg LINE L1 -4760 1324 1075 1 1169 200 225 0 0 chr1 76572495 76572535 -120622897 + (CATA)n Simple_repeat Simple_repeat 2 41 0 1 1169 758 114 11 38 chr1 76572547 76572730 -120622702 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1169 374 283 102 105 chr1 76573512 76573903 -120621529 - MLT1B LTR MaLR 0 390 1 1 1169 475 276 10 0 chr1 76576593 76576691 -120618741 + RSINE1 SINE B4 3 101 -64 1 1169 1165 219 28 40 chr1 76576908 76577599 -120617833 - L1_Mur3 LINE L1 -4260 1617 889 1 1169 244 364 140 17 chr1 76578081 76578260 -120617172 - MER3 DNA MER1_type -4 205 5 1 1169 23 0 0 0 chr1 76578311 76578334 -120617098 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 581 250 21 0 chr1 76580370 76580514 -120614918 - RSINE1 SINE B4 -16 149 3 1 1169 1763 170 24 45 chr1 76580561 76580936 -120614496 + ORR1B2 LTR MaLR 1 367 0 1 1169 606 278 129 53 chr1 76581155 76581364 -120614068 - B4A SINE B4 -67 225 1 1 1169 189 321 85 12 chr1 76581874 76581956 -120613476 + MIR3 SINE MIR 108 195 -13 1 1169 1647 209 60 12 chr1 76582878 76583280 -120612152 + MTC LTR MaLR 1 421 0 1 1169 930 176 14 24 chr1 76583290 76583500 -120611932 + MERVL_2A-int LTR ERVL 5192 5399 -362 1 1169 1648 202 81 0 chr1 76583820 76584152 -120611280 - ORR1B2 LTR MaLR -8 359 1 1 1169 416 209 65 60 chr1 76584617 76584754 -120610678 - ORR1D2 LTR MaLR -14 405 246 1 1169 1394 68 5 10 chr1 76584839 76585033 -120610399 - L1_Mus2 LINE L1 0 6566 6374 1 1169 2956 76 93 18 chr1 76585033 76585475 -120609957 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1169 991 78 25 109 chr1 76585476 76585678 -120609754 + IAPEz-int LTR ERVK 9 193 -6288 1 1169 226 327 0 0 chr1 76585678 76585733 -120609699 + RLTR27 LTR ERVK 221 275 -34 1 1169 849 68 8 0 chr1 76585733 76585850 -120609582 + IAPEz-int LTR ERVK 168 285 -6196 1 1169 10407 54 42 23 chr1 76585850 76587293 -120608139 + IAPEz-int LTR ERVK 211 1680 -4801 1 1169 687 87 10 10 chr1 76587293 76587397 -120608035 - L1_Mus2 LINE L1 -189 6377 6274 1 1169 596 71 0 0 chr1 76587405 76587490 -120607942 - RLTR10-int LTR ERVK -913 1074 990 1 1169 338 224 62 39 chr1 76587572 76587702 -120607730 - RLTR10-int LTR ERVK -5987 1594 1462 1 1169 7670 39 0 3 chr1 76587766 76588727 -120606705 - RLTR10-int LTR ERVK -989 998 41 1 1169 2351 118 93 61 chr1 76588737 76589197 -120606235 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1169 1867 67 28 0 chr1 76589197 76589450 -120605982 - L1_Mus2 LINE L1 -287 6279 6020 1 1169 1135 92 0 0 chr1 76589448 76589611 -120605821 + L1_Mus2 LINE L1 5871 6033 -533 1 1169 517 313 64 35 chr1 76589611 76589813 -120605619 - ORR1D2 LTR MaLR -161 209 2 1 1169 300 261 191 87 chr1 76590471 76590702 -120604730 - HAL1-3A_ME LINE L1 -70 2788 2534 1 1169 264 296 0 0 chr1 76591578 76591676 -120603756 + L1M2 LINE L1 5383 5480 -811 1 1169 483 300 0 7 chr1 76591685 76591826 -120603606 + B1F SINE Alu 3 142 -7 1 1169 189 245 0 0 chr1 76591864 76591913 -120603519 + GA-rich Low_complexity Low_complexity 1 49 0 1 1169 399 89 0 0 chr1 76592305 76592361 -120603071 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1169 1068 268 146 3 chr1 76592607 76592937 -120602495 + MTEa LTR MaLR 1 377 -2 1 1169 501 174 211 20 chr1 76593012 76593164 -120602268 - MER2 DNA MER2_type -140 205 25 1 1169 531 112 0 0 chr1 76595200 76595298 -120600134 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1169 290 340 83 22 chr1 76596542 76596799 -120598633 + L2a LINE L2 3104 3426 0 1 1169 210 163 40 20 chr1 76597443 76597493 -120597939 - PB1D10 SINE Alu -2 115 65 1 1169 6887 146 29 28 chr1 76597714 76598926 -120596506 - Lx2 LINE L1 -1 6996 5784 1 1169 210 150 0 0 chr1 76598930 76598970 -120596462 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1169 405 0 0 0 chr1 76598995 76599040 -120596392 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1169 450 0 0 0 chr1 76599040 76599089 -120596343 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1169 532 295 67 27 chr1 76599089 76599239 -120596193 - RSINE1 SINE B4 -7 158 3 1 1169 427 290 88 88 chr1 76599260 76599453 -120595979 - B3A SINE B2 0 198 6 1 1169 265 402 26 0 chr1 76599599 76599716 -120595716 + MIR SINE MIR 29 148 -60 1 1169 609 14 0 0 chr1 76600314 76600384 -120595048 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1169 343 285 45 23 chr1 76601869 76602002 -120593430 - B1F1 SINE Alu -9 140 5 1 1169 332 316 100 31 chr1 76602045 76602205 -120593227 + MIRb SINE MIR 37 207 -61 1 1169 522 119 0 0 chr1 76602247 76602331 -120593101 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1169 11658 95 82 18 chr1 76602570 76605197 -120590235 + L1VL2 LINE L1 177 2984 -631 1 1169 903 142 0 0 chr1 76605480 76605607 -120589825 + B1_Mus1 SINE Alu 2 128 -20 1 1169 765 69 0 0 chr1 76605696 76605797 -120589635 - B1_Mus2 SINE Alu 0 147 47 1 1169 312 181 115 33 chr1 76605739 76605845 -120589587 - RLTR25A LTR ERVK -521 582 389 1 1169 22 80 0 0 chr1 76606027 76606077 -120589355 + AT_rich Low_complexity Low_complexity 1 50 0 1 1169 195 321 8 99 chr1 76606169 76606290 -120589142 - MIR SINE MIR -34 228 119 1 1169 3827 100 41 2 chr1 76607540 76608080 -120587352 + Lx LINE L1 6086 6646 -8 1 1169 240 111 0 0 chr1 76608606 76608642 -120586790 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1169 21 57 0 0 chr1 76610829 76610864 -120584568 + AT_rich Low_complexity Low_complexity 1 35 0 1 1169 239 363 37 37 chr1 76610907 76611070 -120584362 - L2a LINE L2 -222 3204 3042 1 1169 672 231 112 25 chr1 76611128 76611368 -120584064 + MER33 DNA MER1_type 2 262 -62 1 1169 2217 108 15 24 chr1 76611368 76611708 -120583724 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1169 369 73 0 0 chr1 76611710 76611765 -120583667 + IAPEz-int LTR ERVK 3 57 -1930 1 1169 496 62 0 119 chr1 76611746 76611855 -120583577 + IAPEz-int LTR ERVK 17 112 -6369 1 1169 243 321 0 0 chr1 76611855 76611911 -120583521 + RLTR27 LTR ERVK 220 275 -34 1 1169 9182 103 97 24 chr1 76611911 76614341 -120581091 + IAPEz-int LTR ERVK 168 2774 -3707 1 1169 2957 22 0 0 chr1 76614339 76614696 -120580736 + IAPEz-int LTR ERVK 4001 4357 -2124 1 1169 5493 66 13 18 chr1 76614687 76615462 -120579970 + IAPEz-int LTR ERVK 5709 6479 -2 1 1169 2217 108 15 24 chr1 76615464 76615804 -120579628 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1169 678 333 119 44 chr1 76615881 76616386 -120579046 - L2a LINE L2 -466 2953 2411 1 1169 601 328 133 31 chr1 76617269 76617955 -120577477 + L1MEc LINE L1 57 812 -5588 1 1169 392 296 191 7 chr1 76618002 76618295 -120577137 + L1MEc LINE L1 889 1235 -5165 1 1169 7086 63 25 4 chr1 76619068 76620181 -120575251 - L1Md_F2 LINE L1 -15 6567 5432 1 1169 186 43 0 0 chr1 76620216 76620239 -120575193 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1169 393 22 0 0 chr1 76620605 76620651 -120574781 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1169 189 0 0 0 chr1 76620651 76620671 -120574761 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1169 237 33 0 0 chr1 76621140 76621170 -120574262 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1169 320 223 9 28 chr1 76621242 76621348 -120574084 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1169 614 58 11 0 chr1 76621351 76621438 -120573994 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 1 1169 285 331 7 62 chr1 76623743 76623888 -120571544 + MIRb SINE MIR 61 197 -71 1 1169 522 31 0 0 chr1 76624353 76624417 -120571015 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1169 4338 32 0 6 chr1 76625139 76625647 -120569785 - L1Md_F2 LINE L1 -12 6570 6066 1 1169 1548 39 0 28 chr1 76625647 76625850 -120569582 + L1Md_F3 LINE L1 5680 5880 -704 1 1169 933 155 35 51 chr1 76625850 76626055 -120569377 - URR1B DNA MER1_type -5 220 2 1 1169 361 260 39 31 chr1 76626197 76626324 -120569108 - RMER15 LTR ERVL -5 570 443 1 1169 209 360 0 73 chr1 76627869 76627965 -120567467 + MIRb SINE MIR 160 248 -20 1 1169 309 346 148 24 chr1 76628113 76628323 -120567109 - MIRb SINE MIR -16 252 17 1 1169 21 0 0 0 chr1 76629527 76629548 -120565884 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 988 256 67 23 chr1 76630068 76630339 -120565093 + MTD LTR MaLR 134 405 -14 1 1169 316 265 115 50 chr1 76631414 76631553 -120563879 - HAL1-3A_ME LINE L1 -427 2431 2284 1 1169 512 107 24 0 chr1 76631553 76631637 -120563795 + (TTCC)n Simple_repeat Simple_repeat 2 87 0 1 1169 504 303 62 54 chr1 76632464 76632740 -120562692 + B4 SINE B4 2 279 -13 1 1169 207 100 0 0 chr1 76633058 76633088 -120562344 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1169 22 35 0 0 chr1 76633132 76633161 -120562271 + AT_rich Low_complexity Low_complexity 1 29 0 2 1169 260 314 33 37 chr1 76634254 76634469 -120560963 - L1ME2z LINE L1 -28 6416 6203 2 1169 33 43 0 0 chr1 76636105 76636152 -120559280 + AT_rich Low_complexity Low_complexity 1 47 0 2 1169 526 305 10 65 chr1 76636184 76636384 -120559048 - B3A SINE B2 -9 189 1 2 1169 504 0 0 0 chr1 76636542 76636598 -120558834 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1169 405 0 0 0 chr1 76636598 76636643 -120558789 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1169 296 202 25 0 chr1 76637399 76637478 -120557954 + (TCCA)n Simple_repeat Simple_repeat 3 83 0 2 1169 23 0 0 0 chr1 76637769 76637792 -120557640 + AT_rich Low_complexity Low_complexity 1 23 0 2 1169 188 377 70 28 chr1 76638082 76638224 -120557208 + MIR3 SINE MIR 2 149 -59 2 1169 369 0 0 0 chr1 76639995 76640036 -120555396 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 1169 402 328 157 3 chr1 76640615 76640987 -120554445 - L1ME2 LINE L1 -23 6141 5713 2 1169 276 159 14 0 chr1 76643328 76643397 -120552035 + Lx9 LINE L1 7429 7498 -146 2 1169 617 65 47 0 chr1 76643449 76643556 -120551876 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 2 1169 1194 317 70 0 chr1 76644216 76644686 -120550746 - Lx8 LINE L1 -300 7173 6671 2 1169 1115 241 38 17 chr1 76644685 76645063 -120550369 - Lx7 LINE L1 -1833 5863 5443 2 1169 1600 278 90 40 chr1 76645031 76645983 -120549449 - Lx7 LINE L1 -1008 4872 3873 2 1169 741 303 63 26 chr1 76646718 76646986 -120548446 + B4A SINE B4 1 278 -14 2 1169 256 301 53 21 chr1 76648198 76648293 -120547139 + PB1D10 SINE Alu 12 109 -8 2 1169 252 359 88 20 chr1 76649316 76649464 -120545968 + MIR SINE MIR 30 187 -75 2 1169 184 287 94 21 chr1 76649470 76649566 -120545866 - L3 LINE CR1 -1648 2841 2739 2 1169 267 31 0 0 chr1 76650472 76650504 -120544928 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 2 1169 504 0 0 0 chr1 76650741 76650797 -120544635 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1169 1914 37 19 47 chr1 76652667 76652925 -120542507 + L1Md_F3 LINE L1 6332 6582 -2 2 1169 1816 125 76 44 chr1 76653214 76653531 -120541901 + ORR1A2 LTR MaLR 1 327 0 2 1169 303 339 86 9 chr1 76653595 76653711 -120541721 + B4A SINE B4 64 188 -104 2 1169 701 301 5 19 chr1 76653930 76654140 -120541292 + B3 SINE B2 5 211 -5 2 1169 4611 45 2 0 chr1 76655430 76655987 -120539445 - L1Md_F2 LINE L1 -10 6572 6015 2 1169 395 304 70 103 chr1 76656094 76656307 -120539125 + MER20 DNA MER1_type 2 207 -12 2 1169 197 342 38 0 chr1 76657585 76657664 -120537768 + L2c LINE L2 3207 3288 -99 2 1169 7801 126 53 19 chr1 76657673 76659535 -120535897 + Lx4A LINE L1 4954 6899 -159 2 1169 270 156 0 0 chr1 76660053 76660098 -120535334 - MIR3 SINE MIR -26 182 138 2 1169 465 307 84 11 chr1 76660438 76660616 -120534816 + B4A SINE B4 18 208 -84 2 1169 200 35 35 0 chr1 76660735 76660764 -120534668 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1169 274 378 0 65 chr1 76661508 76661661 -120533771 - L2c LINE L2 -2 3385 3243 2 1169 1969 137 98 58 chr1 76663823 76664202 -120531230 + ORR1B1 LTR MaLR 1 394 0 2 1169 6797 230 38 14 chr1 76664815 76666821 -120528611 + Lx7 LINE L1 5296 7356 -340 2 1169 252 0 0 0 chr1 76666821 76666849 -120528583 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 2 1169 6797 236 45 16 chr1 76666849 76666860 -120528572 + Lx7 LINE L1 7357 7367 -329 2 1169 899 159 0 6 chr1 76666860 76667031 -120528401 + CT-rich Low_complexity Low_complexity 2 171 0 2 1169 357 256 241 29 chr1 76667034 76667308 -120528124 + Lx7 LINE L1 7365 7696 0 2 1169 612 248 0 31 chr1 76667454 76667583 -120527849 + B3 SINE B2 6 130 -86 2 1169 289 422 0 7 chr1 76668016 76668152 -120527280 - MLT1I LTR MaLR -247 164 30 2 1169 311 311 121 71 chr1 76668560 76668882 -120526550 - MLT1I-int LTR MaLR -906 481 144 2 1169 201 352 88 81 chr1 76669435 76669571 -120525861 + L2c LINE L2 3247 3383 -4 2 1169 493 302 110 0 chr1 76670321 76670503 -120524929 + MER20 DNA MER1_type 18 219 0 2 1169 547 302 56 8 chr1 76670718 76670952 -120524480 + L3 LINE CR1 4058 4302 -187 2 1169 229 337 40 107 chr1 76671064 76671390 -120524042 + Lx8 LINE L1 6002 6305 -1168 2 1169 708 261 0 0 chr1 76671450 76671611 -120523821 + Lx8 LINE L1 6755 6915 -558 2 1169 2346 274 135 14 chr1 76671611 76672468 -120522964 + Lx8 LINE L1 6347 7307 -166 2 1169 988 104 0 7 chr1 76672703 76672838 -120522594 + B1_Mur4 SINE Alu 3 136 -14 2 1169 459 0 0 0 chr1 76672845 76672896 -120522536 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 2 1169 436 93 38 30 chr1 76674595 76674615 -120520817 + A-rich Low_complexity Low_complexity 2 20 0 2 1169 1159 55 7 0 chr1 76674615 76674761 -120520671 + B1_Mus1 SINE Alu 1 147 -1 2 1169 436 93 38 30 chr1 76674761 76674873 -120520559 + A-rich Low_complexity Low_complexity 21 134 0 2 1169 25 31 0 0 chr1 76675538 76675570 -120519862 + AT_rich Low_complexity Low_complexity 1 32 0 2 1169 4772 142 13 20 chr1 76675571 76676426 -120519006 - Lx3B LINE L1 -1 6972 6124 2 1169 185 409 0 0 chr1 76676557 76676628 -120518804 - MIRb SINE MIR -147 121 51 2 1169 343 323 75 80 chr1 76676708 76676947 -120518485 - MIR SINE MIR -6 256 19 2 1170 23 0 0 0 chr1 76677433 76677456 -120517976 + AT_rich Low_complexity Low_complexity 1 23 0 2 1170 210 37 0 0 chr1 76678272 76678299 -120517133 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1170 287 265 9 83 chr1 76678511 76678614 -120516818 - B1F2 SINE Alu -27 100 1 2 1170 456 297 8 63 chr1 76678614 76678674 -120516758 - ID SINE ID -150 74 22 2 1170 537 359 153 16 chr1 76678845 76679094 -120516338 + MLT1G3 LTR MaLR 15 297 -298 2 1170 1007 112 6 0 chr1 76680590 76680769 -120514663 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1170 450 0 0 0 chr1 76680769 76680818 -120514614 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1170 241 263 35 14 chr1 76680899 76680993 -120514439 + CT-rich Low_complexity Low_complexity 1 95 0 2 1170 422 303 101 31 chr1 76681069 76681297 -120514135 - B4A SINE B4 -46 246 3 2 1170 182 258 11 0 chr1 76681327 76681416 -120514016 + CT-rich Low_complexity Low_complexity 2 91 0 2 1170 538 321 186 0 chr1 76681963 76682200 -120513232 + MLT1D LTR MaLR 136 416 -89 2 1170 738 23 0 0 chr1 76682443 76682531 -120512901 + (TCC)n Simple_repeat Simple_repeat 3 90 0 2 1170 1028 191 91 0 chr1 76682993 76683234 -120512198 + Lx9 LINE L1 7375 7637 -7 2 1170 203 103 26 0 chr1 76683551 76683590 -120511842 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1170 461 316 8 0 chr1 76683591 76683724 -120511708 - ID_B1 SINE B4 0 224 91 2 1170 25 0 0 0 chr1 76685450 76685475 -120509957 + AT_rich Low_complexity Low_complexity 1 25 0 2 1170 213 304 0 12 chr1 76685609 76685689 -120509743 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1170 2056 174 65 20 chr1 76685695 76686094 -120509338 - MTC LTR MaLR -4 417 1 2 1170 324 0 0 0 chr1 76686094 76686130 -120509302 + HAL1-3A_ME LINE L1 1977 2012 -846 2 1170 612 221 0 0 chr1 76686130 76686284 -120509148 + (TA)n Simple_repeat Simple_repeat 1 154 0 2 1170 231 170 0 0 chr1 76686315 76686362 -120509070 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1170 1515 196 69 9 chr1 76686427 76686747 -120508685 + MTD LTR MaLR 14 352 -67 2 1170 192 179 0 0 chr1 76686760 76686799 -120508633 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 2 1170 216 0 0 0 chr1 76687198 76687222 -120508210 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1170 523 248 41 34 chr1 76687837 76687983 -120507449 - B1F SINE Alu 0 149 3 2 1170 262 313 155 99 chr1 76688074 76688255 -120507177 + MLT1I LTR MaLR 98 288 -123 2 1170 222 264 58 125 chr1 76688538 76688642 -120506790 - B3A SINE B2 -94 104 8 2 1170 303 253 0 37 chr1 76688565 76688647 -120506785 - B4 SINE B4 -208 84 6 2 1170 570 313 26 77 chr1 76688806 76689339 -120506093 - RLTR11A2 LTR ERVK -26 502 1 2 1170 239 229 97 68 chr1 76690685 76690788 -120504644 + L1MDa LINE L1 1406 1511 -5029 2 1170 265 221 51 25 chr1 76690863 76690942 -120504490 + Lx7 LINE L1 7616 7696 0 2 1170 24 32 0 0 chr1 76690942 76690973 -120504459 + AT_rich Low_complexity Low_complexity 1 31 0 2 1170 494 256 64 37 chr1 76691111 76691298 -120504134 + Lx7 LINE L1 7471 7662 -34 2 1170 218 200 15 44 chr1 76691372 76691440 -120503992 + (TCTCTG)n Simple_repeat Simple_repeat 3 68 0 2 1170 292 268 39 64 chr1 76691495 76691698 -120503734 + L1MDa LINE L1 2364 2561 -4072 2 1170 280 323 80 25 chr1 76691719 76692005 -120503427 + L1MDa LINE L1 2854 3155 -3382 2 1170 890 275 59 121 chr1 76692048 76692437 -120502995 + MTEa LTR MaLR 1 365 -14 2 1170 379 284 139 38 chr1 76692813 76693158 -120502274 + L1MD LINE L1 3233 3620 -2526 2 1170 836 117 0 7 chr1 76693158 76693304 -120502128 + (GA)n Simple_repeat Simple_repeat 2 146 0 2 1170 379 284 139 38 chr1 76693304 76693383 -120502049 + L1MD LINE L1 3621 3699 -2447 2 1170 526 325 85 9 chr1 76693596 76693925 -120501507 + L1MD LINE L1 4270 4623 -1523 2 1170 3359 23 8 0 chr1 76695085 76695478 -120499954 - MTA_Mm LTR MaLR 0 396 1 2 1170 315 0 0 0 chr1 76695863 76695898 -120499534 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1170 1399 86 5 0 chr1 76696072 76696269 -120499163 + L1Md_F2 LINE L1 6373 6570 -12 2 1170 381 312 67 15 chr1 76696354 76696549 -120498883 - L1_Rod LINE L1 0 5847 5643 2 1170 23 54 0 0 chr1 76697959 76697996 -120497436 + AT_rich Low_complexity Low_complexity 1 37 0 2 1170 396 0 0 0 chr1 76698910 76698954 -120496478 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1170 23 68 0 0 chr1 76699606 76699650 -120495782 + AT_rich Low_complexity Low_complexity 1 44 0 2 1170 496 333 0 16 chr1 76699998 76700181 -120495251 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1170 241 354 23 45 chr1 76700104 76700237 -120495195 + (CACG)n Simple_repeat Simple_repeat 2 131 0 2 1170 327 192 0 0 chr1 76701298 76701376 -120494056 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1170 218 237 17 0 chr1 76701381 76701440 -120493992 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 3 1170 428 200 5 54 chr1 76701440 76701625 -120493807 + (CATA)n Simple_repeat Simple_repeat 4 179 0 3 1170 2741 298 93 70 chr1 76702344 76703839 -120491593 + Lx8 LINE L1 5930 7458 -15 3 1170 243 0 0 0 chr1 76703905 76703932 -120491500 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1170 849 88 0 0 chr1 76704746 76704883 -120490549 + (GA)n Simple_repeat Simple_repeat 1 137 0 3 1170 1511 292 108 26 chr1 76705709 76706670 -120488762 - L1MC2 LINE L1 -25 6319 5280 3 1170 21 57 0 0 chr1 76706751 76706786 -120488646 + AT_rich Low_complexity Low_complexity 1 35 0 3 1170 534 284 120 0 chr1 76706788 76706971 -120488461 - B3 SINE B2 -8 208 4 3 1170 438 296 61 6 chr1 76706983 76707146 -120488286 - L1MC2 LINE L1 -952 5194 5023 3 1170 903 303 94 43 chr1 76707315 76708254 -120487178 - L1M5 LINE L1 -1443 4703 3717 3 1170 252 263 0 0 chr1 76708494 76708608 -120486824 + GA-rich Low_complexity Low_complexity 4 117 0 3 1170 468 0 0 0 chr1 76708692 76708744 -120486688 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 3 1170 212 389 72 29 chr1 76708817 76709026 -120486406 - L2 LINE L2 -352 3067 2850 3 1170 488 297 13 25 chr1 76709165 76709324 -120486108 + RSINE1 SINE B4 9 165 0 3 1170 555 16 0 0 chr1 76709450 76709514 -120485918 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1170 329 48 0 0 chr1 76709515 76709557 -120485875 - Lx3_Mus LINE L1 -415 6594 6553 3 1170 4115 87 5 10 chr1 76709561 76710304 -120485128 - Lx3_Mus LINE L1 -932 6077 5339 3 1170 1496 167 48 0 chr1 76710306 76710557 -120484875 - MTC LTR MaLR -118 303 41 3 1170 537 125 0 0 chr1 76710564 76710652 -120484780 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1170 21 0 0 0 chr1 76711537 76711558 -120483874 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 518 312 192 39 chr1 76712149 76712632 -120482800 - MLT1F LTR MaLR -2 567 15 3 1170 231 0 24 49 chr1 76713243 76713284 -120482148 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 3 1170 324 308 68 89 chr1 76713514 76713660 -120481772 - B1F SINE Alu -6 143 1 3 1170 1327 165 4 4 chr1 76715651 76715876 -120479556 - URR1A DNA MER1_type 0 226 2 3 1170 439 304 24 88 chr1 76715652 76715901 -120479531 + CYRA11_Mm Unknown Y-chromosome 172 404 -213 3 1170 276 120 0 0 chr1 76716754 76716804 -120478628 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1170 399 312 271 85 chr1 76717030 76717345 -120478087 - ORR1C2 LTR MaLR 0 379 6 3 1170 1996 13 0 0 chr1 76717393 76717619 -120477813 - L1_Mm LINE L1 -348 5535 5310 3 1170 4043 2 0 0 chr1 76717619 76718067 -120477365 + L1Md_A LINE L1 6135 6582 0 3 1170 1204 41 0 7 chr1 76718084 76718232 -120477200 + B1_Mm SINE Alu 1 147 0 3 1170 237 178 0 0 chr1 76719137 76719182 -120476250 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 3 1170 594 293 70 36 chr1 76719321 76719650 -120475782 - L1MA4A LINE L1 -311 5992 5653 3 1170 1057 92 0 40 chr1 76722927 76723075 -120472357 + B1_Mus1 SINE Alu 1 142 -6 3 1170 198 134 45 0 chr1 76723088 76723155 -120472277 + (CAAA)n Simple_repeat Simple_repeat 3 72 0 3 1170 782 189 14 14 chr1 76723193 76723338 -120472094 - B1_Mur4 SINE Alu -5 145 1 3 1170 362 263 2 0 chr1 76723414 76723501 -120471931 + B3A SINE B2 2 89 -106 3 1170 2294 76 27 48 chr1 76724046 76724471 -120470961 - L1_Mus3 LINE L1 0 6638 6264 3 1170 2833 71 0 2 chr1 76724468 76724865 -120470567 - L1_Mus3 LINE L1 -502 6136 5741 3 1170 279 0 0 0 chr1 76725321 76725352 -120470080 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1170 283 169 14 14 chr1 76726136 76726208 -120469224 + CT-rich Low_complexity Low_complexity 1 72 0 3 1170 209 185 0 15 chr1 76726249 76726315 -120469117 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1170 206 255 0 41 chr1 76726563 76726661 -120468771 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 3 1170 657 168 0 0 chr1 76726661 76726840 -120468592 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1170 579 283 89 16 chr1 76726934 76727124 -120468308 - B4 SINE B4 -83 209 6 3 1170 272 373 0 0 chr1 76727282 76727357 -120468075 + ID4 SINE ID 7 81 -2 3 1170 573 15 0 0 chr1 76727415 76727481 -120467951 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1170 284 221 40 40 chr1 76727782 76727881 -120467551 - Lx7 LINE L1 -15 7681 7583 3 1170 21 0 0 0 chr1 76727944 76727965 -120467467 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 1301 233 100 6 chr1 76727987 76728336 -120467096 - Lx7 LINE L1 -388 7308 6927 3 1170 861 299 99 3 chr1 76728336 76728658 -120466774 - MTEa LTR MaLR -4 375 23 3 1170 590 358 12 0 chr1 76728994 76729156 -120466276 + RSINE1 SINE B4 2 165 0 3 1170 198 136 0 0 chr1 76729861 76729905 -120465527 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1170 997 103 0 7 chr1 76731002 76731139 -120464293 + B1_Mus2 SINE Alu 2 137 -10 3 1170 187 264 27 40 chr1 76731388 76731463 -120463969 - MIR SINE MIR -149 113 40 3 1170 207 0 0 0 chr1 76731515 76731538 -120463894 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1170 862 228 136 68 chr1 76731765 76732145 -120463287 + MTE2b LTR MaLR 4 379 0 3 1170 238 218 0 3 chr1 76732692 76732768 -120462664 - L1_Mur2 LINE L1 -2628 3219 3124 3 1170 219 36 0 0 chr1 76732924 76732952 -120462480 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1170 669 152 22 0 chr1 76734001 76734139 -120461293 + CT-rich Low_complexity Low_complexity 2 142 0 3 1170 892 218 15 44 chr1 76734809 76735015 -120460417 + B3 SINE B2 2 201 -15 3 1170 208 189 0 54 chr1 76735137 76735193 -120460239 + A-rich Low_complexity Low_complexity 5 57 0 3 1170 1587 156 22 103 chr1 76735768 76736126 -120459306 - ORR1A4 LTR MaLR 0 329 1 3 1170 17808 21 0 0 chr1 76736198 76738364 -120457068 - L1Md_T LINE L1 -251 5632 3467 3 1170 8874 6 0 1 chr1 76738364 76739349 -120456083 + L1Md_T LINE L1 5599 6582 0 3 1170 5166 52 35 5 chr1 76740761 76740827 -120454605 - L1Md_F2 LINE L1 -12 6570 6482 3 1170 191 36 36 0 chr1 76740827 76740855 -120454577 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 3 1170 5166 52 35 5 chr1 76740855 76741443 -120453989 - L1Md_F2 LINE L1 -101 6481 5896 3 1170 351 121 0 0 chr1 76741452 76741510 -120453922 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1170 245 298 140 13 chr1 76741571 76741799 -120453633 - Lx9 LINE L1 -28 7616 7360 3 1170 480 111 0 0 chr1 76741810 76741900 -120453532 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1170 498 331 127 23 chr1 76741982 76742369 -120453063 - L1ME3B LINE L1 -403 5837 5411 3 1170 333 291 87 91 chr1 76742895 76742949 -120452483 - L1MD LINE L1 -1359 4787 4739 3 1170 803 39 0 10 chr1 76742949 76743053 -120452379 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 3 1170 333 291 87 91 chr1 76743053 76743089 -120452343 - L1MD LINE L1 -1408 4738 4701 3 1170 574 220 40 54 chr1 76743089 76743238 -120452194 - B1_Mur3 SINE Alu -1 148 2 3 1170 333 293 107 81 chr1 76743238 76743499 -120451933 - L1MD LINE L1 -1446 4700 4404 3 1170 25 0 0 0 chr1 76743640 76743665 -120451767 + AT_rich Low_complexity Low_complexity 1 25 0 3 1170 328 354 80 32 chr1 76744065 76744316 -120451116 - L1MD LINE L1 -2346 3800 3538 3 1170 302 300 45 24 chr1 76745037 76745210 -120450222 - L1MC4 LINE L1 -1414 6628 6444 3 1170 246 236 127 0 chr1 76746238 76746348 -120449084 - Lx6 LINE L1 -28 7432 7309 3 1170 386 381 41 38 chr1 76746403 76746684 -120448748 - B4A SINE B4 -11 281 3 3 1170 1583 37 0 10 chr1 76746763 76746956 -120448476 - B2_Mm1a SINE B2 -2 191 1 3 1170 307 232 101 59 chr1 76748994 76749113 -120446319 - MLT1A0 LTR MaLR -241 124 1 3 1170 3899 33 0 0 chr1 76749178 76749635 -120445797 + L1Md_T LINE L1 6126 6582 0 3 1170 1034 233 5 0 chr1 76750152 76750367 -120445065 + B3 SINE B2 1 216 0 3 1170 312 319 27 34 chr1 76752636 76752785 -120442647 - MER5B DNA MER1_type -24 154 7 3 1170 205 211 57 19 chr1 76752827 76752880 -120442552 - MER5A DNA MER1_type -75 114 60 3 1170 636 55 13 65 chr1 76753125 76753279 -120442153 + (GGAGA)n Simple_repeat Simple_repeat 1 146 0 3 1170 500 304 119 30 chr1 76754074 76754391 -120441041 + RMER20B LTR ERVK 127 471 -45 3 1170 822 168 249 0 chr1 76754516 76754689 -120440743 - B3 SINE B2 0 216 1 3 1170 260 299 16 33 chr1 76754964 76755085 -120440347 - MIR SINE MIR -2 260 142 3 1170 546 361 30 27 chr1 76756490 76756786 -120438646 - MER102b DNA MER1_type -44 297 1 3 1170 187 392 56 0 chr1 76756800 76756907 -120438525 + L2b LINE L2 3263 3375 0 3 1170 194 351 133 30 chr1 76756987 76757122 -120438310 + MIR SINE MIR 1 149 -127 3 1170 861 269 0 0 chr1 76757947 76758133 -120437299 - B3 SINE B2 -4 212 27 3 1170 23860 55 0 1 chr1 76758148 76762012 -120433420 - L1Md_F2 LINE L1 -11 6571 2709 3 1170 1643 67 25 4 chr1 76762012 76762282 -120433150 + MTA_Mm LTR MaLR 133 400 0 3 1170 4033 14 0 1 chr1 76762282 76762780 -120432652 + MTA_Mm-int LTR MaLR 1 975 -817 3 1170 1474 171 3 6 chr1 76762781 76763093 -120432339 - L1Md_F LINE L1 -6178 341 31 3 1170 3222 44 10 12 chr1 76763285 76763696 -120431736 - L1Md_F3 LINE L1 -2 6582 6173 3 1170 301 304 88 29 chr1 76763967 76764241 -120431191 + L1MD2 LINE L1 6060 6349 -10 3 1170 21 0 0 0 chr1 76764650 76764671 -120430761 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 251 50 50 0 chr1 76764712 76764752 -120430680 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 3 1170 279 0 0 0 chr1 76765154 76765185 -120430247 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1170 325 409 28 11 chr1 76765412 76765590 -120429842 - MER58A DNA MER1_type -34 190 10 3 1170 364 273 11 0 chr1 76765978 76766066 -120429366 + ID_B1 SINE B4 6 94 -130 3 1170 243 385 36 9 chr1 76766069 76766179 -120429253 + B3 SINE B2 6 118 -98 3 1170 433 340 92 77 chr1 76766092 76766353 -120429079 + B4A SINE B4 28 292 0 3 1170 229 242 99 99 chr1 76766295 76766387 -120429045 + B3 SINE B2 113 206 -10 3 1170 546 16 0 0 chr1 76766387 76766450 -120428982 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 4 1170 567 275 0 0 chr1 76766467 76766587 -120428845 + ID_B1 SINE B4 92 211 -13 3 1170 417 274 47 39 chr1 76766475 76766604 -120428828 + B1F SINE Alu 19 148 -1 4 1170 275 0 29 0 chr1 76766618 76766653 -120428779 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1170 997 186 84 0 chr1 76766876 76767134 -120428298 + MTC LTR MaLR 1 331 -90 4 1170 1680 228 53 3 chr1 76768594 76768968 -120426464 - MTD LTR MaLR -26 393 1 4 1170 2977 22 11 8 chr1 76769916 76770282 -120425150 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1170 6548 36 2 11 chr1 76770282 76771112 -120424320 - IAPEz-int LTR ERVK 0 6481 5659 4 1170 12402 13 1 0 chr1 76771120 76772565 -120422867 - IAPEz-int LTR ERVK -992 5489 4044 4 1170 3016 6 0 0 chr1 76772564 76772910 -120422522 - IAPEz-int LTR ERVK -2926 3555 3210 4 1170 6336 104 84 88 chr1 76772909 76774220 -120421212 - IAPEz-int LTR ERVK -5168 1313 8 4 1170 2977 22 11 8 chr1 76774220 76774586 -120420846 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1170 349 311 52 59 chr1 76775076 76775210 -120420222 - Lx9 LINE L1 0 7473 7345 4 1170 432 0 0 0 chr1 76775210 76775258 -120420174 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1170 498 310 31 23 chr1 76775258 76775498 -120419934 - Lx9 LINE L1 -182 7462 7153 4 1170 360 0 0 0 chr1 76775690 76775730 -120419702 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1170 216 0 0 0 chr1 76779620 76779644 -120415788 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1170 728 291 49 26 chr1 76780085 76780311 -120415121 + B4A SINE B4 44 274 -18 4 1170 967 223 155 30 chr1 76780813 76781142 -120414290 + ORR1D2 LTR MaLR 1 370 0 4 1170 405 0 0 0 chr1 76781496 76781541 -120413891 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1170 477 0 0 0 chr1 76782786 76782839 -120412593 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1170 590 335 51 14 chr1 76783253 76783529 -120411903 + B4 SINE B4 5 290 -2 4 1170 244 325 54 47 chr1 76783817 76783946 -120411486 - MIRc SINE MIR -116 152 23 4 1170 243 61 0 0 chr1 76784198 76784231 -120411201 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1170 5610 45 3 9 chr1 76784345 76785039 -120410393 - L1Md_F2 LINE L1 -12 6570 5881 4 1170 2970 73 0 0 chr1 76785039 76785437 -120409995 + L1Md_F2 LINE L1 5486 5883 0 4 1170 438 338 13 69 chr1 76786122 76786281 -120409151 - B4A SINE B4 -133 159 10 4 1170 225 247 0 107 chr1 76786286 76786349 -120409083 - ID2 SINE ID -54 98 41 4 1170 2047 132 6 3 chr1 76786349 76786677 -120408755 - ORR1A4 LTR MaLR 0 329 1 4 1170 225 230 0 113 chr1 76786677 76786717 -120408715 - ID2 SINE ID -41 42 5 4 1170 980 275 193 30 chr1 76788639 76789044 -120406388 + MLT1D LTR MaLR 21 491 -14 4 1170 252 298 17 9 chr1 76789133 76789248 -120406184 - L1MC LINE L1 -2010 5775 5660 4 1170 23 33 0 0 chr1 76789296 76789326 -120406106 + AT_rich Low_complexity Low_complexity 1 30 0 4 1170 2376 322 59 23 chr1 76789426 76789746 -120405686 - Lx7 LINE L1 -31 7442 7092 4 1170 3003 55 34 8 chr1 76789746 76790132 -120405300 - MTA_Mm LTR MaLR 0 396 1 4 1170 2376 327 57 25 chr1 76790132 76791072 -120404360 - Lx7 LINE L1 -605 7091 6112 4 1170 345 47 0 0 chr1 76791157 76791200 -120404232 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1170 683 284 226 31 chr1 76791227 76791639 -120403793 - MLT1F LTR MaLR -33 536 38 4 1170 206 260 0 20 chr1 76791826 76791877 -120403555 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 4 1170 456 161 0 0 chr1 76793745 76793826 -120401606 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1170 423 0 0 0 chr1 76793847 76793894 -120401538 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1170 1431 18 0 0 chr1 76794136 76794302 -120401130 + (TCTCCC)n Simple_repeat Simple_repeat 3 168 0 4 1170 320 270 0 0 chr1 76794303 76794366 -120401066 - B3A SINE B2 -47 151 89 4 1170 529 295 126 5 chr1 76795000 76795191 -120400241 + B3 SINE B2 1 214 -2 4 1170 7685 92 46 6 chr1 76795407 76796459 -120398973 - Lx3_Mus LINE L1 -8 7001 5908 4 1170 339 25 0 0 chr1 76796459 76796499 -120398933 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 1170 7685 92 46 6 chr1 76796499 76796577 -120398855 - Lx3_Mus LINE L1 -1102 5907 5827 4 1170 517 296 6 31 chr1 76797191 76797323 -120398109 + PB1 SINE Alu 1 128 -21 4 1170 393 306 107 0 chr1 76798782 76798903 -120396529 + ID_B1 SINE B4 86 219 -5 4 1170 630 60 0 0 chr1 76799677 76799760 -120395672 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 1170 474 18 0 0 chr1 76799760 76799814 -120395618 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1170 1194 74 0 0 chr1 76799976 76800124 -120395308 + B1_Mus1 SINE Alu 1 148 0 4 1170 721 201 23 0 chr1 76800124 76800298 -120395134 + GA-rich Low_complexity Low_complexity 1 178 0 4 1170 579 178 0 0 chr1 76800256 76800430 -120395002 + A-rich Low_complexity Low_complexity 3 176 0 4 1170 1153 301 90 30 chr1 76800449 76801120 -120394312 - L1MA4 LINE L1 -389 5911 5182 4 1170 568 194 166 33 chr1 76801126 76801307 -120394125 - URR1B DNA MER1_type 0 225 21 4 1170 594 272 61 43 chr1 76801616 76801893 -120393539 + RLTR15 LTR ERVK 5 286 -73 4 1170 647 240 181 0 chr1 76802070 76802241 -120393191 + B3 SINE B2 5 206 -10 4 1170 345 103 44 0 chr1 76802682 76802750 -120392682 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1170 1264 272 177 8 chr1 76802765 76803431 -120392001 - L1MC3 LINE L1 -153 7632 6854 4 1170 244 0 56 0 chr1 76803697 76803733 -120391699 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1170 6734 84 18 19 chr1 76803733 76805065 -120390367 - L1_Mus2 LINE L1 -4 6562 5239 4 1170 9795 115 21 1 chr1 76805065 76806670 -120388762 - L1_Mus2 LINE L1 -1499 4384 2748 4 1170 4567 104 17 34 chr1 76806667 76807440 -120387992 + L1_Mus2 LINE L1 1983 2742 -3141 4 1171 405 58 0 0 chr1 76809226 76809278 -120386154 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1171 901 94 0 0 chr1 76809864 76810002 -120385430 + Lx2 LINE L1 6859 6996 -1 4 1171 249 42 20 41 chr1 76810394 76810443 -120384989 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1171 3767 63 4 10 chr1 76810482 76810994 -120384438 + MTA_Mm-int LTR MaLR 590 1098 0 4 1171 2743 44 3 0 chr1 76810994 76811334 -120384098 + MTA_Mm LTR MaLR 1 341 -55 4 1171 26 0 0 0 chr1 76811572 76811598 -120383834 + AT_rich Low_complexity Low_complexity 1 26 0 4 1171 22 88 0 0 chr1 76811650 76811707 -120383725 + AT_rich Low_complexity Low_complexity 1 57 0 4 1171 540 330 62 21 chr1 76812166 76812358 -120383074 + MLT1A0 LTR MaLR 3 202 -163 4 1171 3164 180 14 18 chr1 76812539 76813161 -120382271 - Lx4B LINE L1 -1 7057 6438 4 1171 381 93 0 0 chr1 76813161 76813215 -120382217 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 4 1171 9072 145 16 6 chr1 76813217 76814794 -120380638 - Lx4B LINE L1 -725 6333 4728 4 1171 203 0 37 0 chr1 76814794 76814821 -120380611 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1171 9072 145 12 21 chr1 76814821 76815519 -120379913 - Lx4B LINE L1 -1150 4736 4098 4 1171 1019 290 65 3 chr1 76816079 76816435 -120378997 - MTE2b LTR MaLR -1 378 1 4 1171 311 333 21 0 chr1 76817636 76817729 -120377703 + B4 SINE B4 1 95 -197 4 1171 25 51 0 0 chr1 76817937 76817976 -120377456 + AT_rich Low_complexity Low_complexity 1 39 0 4 1171 272 270 79 0 chr1 76818067 76818130 -120377302 + RSINE1 SINE B4 98 165 0 4 1171 996 290 40 23 chr1 76818872 76819218 -120376214 - MTE2b LTR MaLR -9 370 19 4 1171 237 24 0 68 chr1 76819219 76819263 -120376169 + L1Md_F2 LINE L1 6530 6570 -12 4 1171 410 267 34 25 chr1 76819941 76820060 -120375372 + RSINE1 SINE B4 2 121 -44 4 1171 474 18 0 0 chr1 76820082 76820137 -120375295 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1171 234 159 0 154 chr1 76820251 76820303 -120375129 - B4 SINE B4 0 292 249 4 1171 289 265 44 0 chr1 76820809 76820877 -120374555 - PB1D10 SINE Alu -40 77 7 4 1171 12144 43 17 1 chr1 76820925 76823176 -120372256 - L1Md_F2 LINE L1 -2 6580 4296 4 1171 2881 137 0 4 chr1 76823175 76823675 -120371757 - L1Md_A LINE L1 -5605 1119 622 4 1171 3797 190 29 0 chr1 76823970 76824633 -120370799 - Lx5 LINE L1 -3 7047 6366 4 1171 293 353 77 57 chr1 76826100 76826346 -120369086 + MIR SINE MIR 4 254 -8 4 1171 546 16 0 0 chr1 76826792 76826855 -120368577 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1171 360 111 0 0 chr1 76827155 76827209 -120368223 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1171 184 350 37 37 chr1 76828277 76828384 -120367048 - L2b LINE L2 -1 3374 3268 4 1171 219 139 0 0 chr1 76829795 76829831 -120365601 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 4 1171 588 341 12 0 chr1 76829861 76830028 -120365404 - B4A SINE B4 0 292 124 4 1171 825 11 0 0 chr1 76830194 76830288 -120365144 + (GAA)n Simple_repeat Simple_repeat 1 94 0 4 1171 285 316 122 0 chr1 76830485 76830624 -120364808 - MIR SINE MIR -1 261 106 4 1171 182 273 0 0 chr1 76831340 76831384 -120364048 + L2c LINE L2 3335 3378 -9 4 1171 3829 208 87 17 chr1 76835066 76836065 -120359367 + Lx5 LINE L1 5982 7050 0 4 1171 343 359 72 46 chr1 76836092 76836313 -120359119 - L1ME1 LINE L1 -304 5875 5647 4 1171 6396 59 12 1 chr1 76836313 76837112 -120358320 - RLTR13C2 LTR ERVK 0 808 1 4 1171 343 359 72 46 chr1 76837112 76837153 -120358279 - L1ME1 LINE L1 -533 5646 5606 4 1171 773 217 35 58 chr1 76837270 76837441 -120357991 + B3A SINE B2 2 168 -30 4 1171 497 16 0 16 chr1 76837444 76837507 -120357925 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1171 1151 153 5 0 chr1 76837765 76837967 -120357465 - Lx2 LINE L1 0 6997 6795 4 1171 207 0 0 0 chr1 76838647 76838670 -120356762 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1171 932 90 83 0 chr1 76838670 76838803 -120356629 - B1_Mus2 SINE Alu 0 147 4 4 1171 2301 91 0 0 chr1 76838855 76839163 -120356269 + L1_Mus1 LINE L1 6260 6567 0 4 1171 315 0 0 0 chr1 76839895 76839930 -120355502 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 4 1171 667 296 129 72 chr1 76840456 76840804 -120354628 - MTD LTR MaLR -41 366 1 4 1171 1198 197 4 39 chr1 76841297 76841529 -120353903 + URR1B DNA MER1_type 2 225 0 4 1171 4682 151 39 70 chr1 76841641 76842655 -120352777 + RLTR13C1 LTR ERVK 1 983 0 4 1171 270 151 113 0 chr1 76842774 76842827 -120352605 - Charlie25 DNA MER1_type -824 1700 1642 4 1171 221 0 0 33 chr1 76843224 76843254 -120352178 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1171 1906 191 99 5 chr1 76844253 76844414 -120351018 + MTC LTR MaLR 1 192 -229 4 1171 4576 69 0 8 chr1 76844414 76845013 -120350419 + L1Md_F2 LINE L1 5985 6578 -4 4 1171 789 82 0 0 chr1 76845019 76845129 -120350303 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 5 1171 1906 191 99 5 chr1 76845129 76845345 -120350087 + MTC LTR MaLR 202 420 -1 4 1171 348 24 0 0 chr1 76845641 76845682 -120349750 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1171 1167 156 52 5 chr1 76846929 76847141 -120348291 + URR1B DNA MER1_type 4 225 0 5 1171 432 0 0 0 chr1 76847149 76847197 -120348235 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1171 237 83 0 0 chr1 76847202 76847238 -120348194 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1171 940 118 7 0 chr1 76847330 76847474 -120347958 - URR1A DNA MER1_type -2 224 80 5 1171 792 310 56 14 chr1 76847681 76847966 -120347466 + MLT2D LTR ERVL 1 297 -117 5 1171 231 88 0 0 chr1 76847973 76848007 -120347425 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 5 1171 22 0 0 0 chr1 76848229 76848251 -120347181 + AT_rich Low_complexity Low_complexity 1 22 0 5 1171 679 292 7 0 chr1 76848251 76848405 -120347027 - B3 SINE B2 -5 211 57 5 1171 22 0 0 0 chr1 76848435 76848457 -120346975 + AT_rich Low_complexity Low_complexity 1 22 0 5 1171 362 294 9 0 chr1 76849007 76849116 -120346316 - PB1D10 SINE Alu -3 114 5 5 1171 462 306 53 20 chr1 76849835 76849985 -120345447 + RSINE1 SINE B4 11 165 0 5 1171 351 0 0 0 chr1 76850131 76850170 -120345262 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1171 540 318 82 25 chr1 76850452 76850939 -120344493 + L1M5 LINE L1 4878 5392 -754 5 1171 872 271 76 22 chr1 76851375 76851650 -120343782 + B4 SINE B4 1 290 -2 5 1171 243 0 0 0 chr1 76851857 76851884 -120343548 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1171 1508 175 38 131 chr1 76851950 76852375 -120343057 - ORR1C2 LTR MaLR 0 379 6 5 1171 221 206 80 24 chr1 76852383 76852480 -120342952 + MIRm SINE MIR 94 195 -73 5 1171 250 369 48 0 chr1 76853031 76853115 -120342317 - B1F1 SINE Alu -39 110 23 5 1171 2251 57 0 11 chr1 76853203 76853487 -120341945 - L1_Mus1 LINE L1 0 6567 6287 5 1171 415 336 202 24 chr1 76854144 76854444 -120340988 + MER21B LTR ERV1 496 848 -15 5 1171 21 0 0 0 chr1 76854472 76854493 -120340939 + AT_rich Low_complexity Low_complexity 1 21 0 5 1171 459 303 101 100 chr1 76855688 76856054 -120339378 - ORR1E LTR MaLR -1 378 3 5 1171 374 85 0 17 chr1 76856667 76856727 -120338705 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1171 484 319 0 55 chr1 76856728 76856874 -120338558 - RSINE1 SINE B4 -26 139 2 5 1171 728 152 8 0 chr1 76857022 76857154 -120338278 + CT-rich Low_complexity Low_complexity 2 134 0 5 1171 3903 53 4 2 chr1 76857172 76857682 -120337750 + L1_Mus2 LINE L1 6025 6535 -31 5 1171 247 307 150 45 chr1 76859907 76860040 -120335392 - MER5B DNA MER1_type -16 162 16 5 1171 247 254 0 17 chr1 76861194 76861254 -120334178 + GA-rich Low_complexity Low_complexity 6 64 0 5 1171 232 262 10 10 chr1 76863983 76864087 -120331345 + CT-rich Low_complexity Low_complexity 4 107 0 5 1171 1199 289 107 43 chr1 76864219 76864735 -120330697 + RMER15 LTR ERVL 27 575 0 5 1171 315 307 11 43 chr1 76864735 76864919 -120330513 + CT-rich Low_complexity Low_complexity 3 180 0 5 1171 213 149 21 0 chr1 76865660 76865707 -120329725 + A-rich Low_complexity Low_complexity 4 51 0 5 1171 21 36 0 0 chr1 76865741 76865769 -120329663 + AT_rich Low_complexity Low_complexity 1 28 0 5 1171 336 301 0 12 chr1 76865781 76865865 -120329567 + BC1_Mm scRNA scRNA 3 85 -67 5 1171 189 0 0 0 chr1 76865915 76865936 -120329496 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1171 617 273 28 14 chr1 76865936 76866081 -120329351 - B3A SINE B2 -50 148 2 5 1171 281 222 118 20 chr1 76866859 76866962 -120328470 - PB1D10 SINE Alu -2 115 4 5 1171 7015 76 34 1 chr1 76867096 76868587 -120326845 + L1_Mus1 LINE L1 5037 6567 0 5 1171 1250 223 53 90 chr1 76869295 76869657 -120325775 + ORR1D2 LTR MaLR 23 370 0 5 1171 633 381 38 58 chr1 76871122 76871409 -120324023 + MLT1A1 LTR MaLR 19 298 -110 5 1171 986 177 113 0 chr1 76871409 76871612 -120323820 - URR1A DNA MER1_type 0 226 1 5 1171 633 381 38 58 chr1 76871612 76871722 -120323710 + MLT1A1 LTR MaLR 299 408 0 5 1171 26 0 0 0 chr1 76871920 76871946 -120323486 + AT_rich Low_complexity Low_complexity 1 26 0 5 1171 259 300 71 26 chr1 76872383 76872496 -120322936 + L2b LINE L2 3258 3375 0 5 1171 246 216 0 0 chr1 76872695 76872769 -120322663 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1171 309 49 63 32 chr1 76872771 76872834 -120322598 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 5 1171 180 0 0 0 chr1 76873895 76873915 -120321517 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1171 228 200 0 0 chr1 76874246 76874296 -120321136 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 5 1171 751 266 106 0 chr1 76874336 76874524 -120320908 - B3 SINE B2 -7 209 2 5 1171 311 297 139 0 chr1 76874554 76874655 -120320777 - ID_B1 SINE B4 -109 115 1 5 1171 390 315 64 40 chr1 76874683 76874934 -120320498 + Lx8 LINE L1 6668 6924 -549 5 1171 1177 68 0 0 chr1 76876201 76876348 -120319084 - B1_Mus2 SINE Alu 0 147 1 5 1171 315 71 0 0 chr1 76876356 76876398 -120319034 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1171 1569 24 68 0 chr1 76876429 76876634 -120318798 - L1Md_F3 LINE L1 0 6584 6366 5 1171 251 73 49 0 chr1 76877772 76877813 -120317619 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 5 1171 627 348 32 12 chr1 76877996 76878246 -120317186 + MLT2C2 LTR ERVL 4 258 -206 5 1171 343 263 26 0 chr1 76878249 76878325 -120317107 + RSINE1 SINE B4 3 80 -85 5 1171 336 245 0 0 chr1 76878720 76878826 -120316606 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 1171 329 233 0 43 chr1 76879196 76879290 -120316142 + (TATG)n Simple_repeat Simple_repeat 2 91 0 5 1171 510 148 0 0 chr1 76879291 76879392 -120316040 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1171 510 279 0 127 chr1 76879400 76879589 -120315843 - RSINE1 SINE B4 0 165 1 5 1171 244 25 24 48 chr1 76880235 76880277 -120315155 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 5 1171 296 24 24 0 chr1 76881054 76881095 -120314337 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1171 192 77 0 0 chr1 76881968 76881994 -120313438 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1171 3471 181 114 76 chr1 76882868 76883725 -120311707 + RMER19B LTR ERVK 1 890 -12 5 1171 352 290 29 20 chr1 76886301 76886403 -120309029 + PB1D9 SINE Alu 6 108 -12 5 1171 27 49 0 0 chr1 76886959 76887000 -120308432 + AT_rich Low_complexity Low_complexity 1 41 0 5 1171 333 0 0 0 chr1 76887007 76887044 -120308388 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1171 1048 166 70 9 chr1 76887720 76887933 -120307499 + URR1A DNA MER1_type 1 226 0 5 1171 275 345 79 37 chr1 76891250 76891464 -120303968 + Charlie16a DNA MER1_type 90 312 -30 5 1171 253 329 0 0 chr1 76894043 76894116 -120301316 - ID4_ SINE ID -9 74 2 5 1171 219 286 0 0 chr1 76894145 76894201 -120301231 + B4A SINE B4 85 140 -152 5 1171 826 150 3 36 chr1 76894302 76894606 -120300826 + GA-rich Low_complexity Low_complexity 1 293 0 5 1171 277 342 98 31 chr1 76894729 76894922 -120300510 + MLT1K LTR MaLR 372 577 -18 5 1171 1142 160 0 28 chr1 76896642 76896860 -120298572 + Lx4A LINE L1 6845 7056 -2 5 1171 654 130 0 0 chr1 76896875 76896983 -120298449 + (GA)n Simple_repeat Simple_repeat 1 108 0 5 1171 440 304 132 20 chr1 76898352 76898833 -120296599 - Kanga11a DNA Tc2 -313 657 101 5 1171 637 258 90 83 chr1 76899728 76900016 -120295416 + B4 SINE B4 1 290 -2 5 1171 231 36 0 0 chr1 76900028 76900056 -120295376 + (CATG)n Simple_repeat Simple_repeat 3 30 0 5 1171 202 268 18 0 chr1 76900188 76900244 -120295188 + (CTG)n Simple_repeat Simple_repeat 2 58 0 5 1171 798 206 0 0 chr1 76901185 76901440 -120293992 + (CA)n Simple_repeat Simple_repeat 1 255 0 5 1171 450 0 0 0 chr1 76904686 76904736 -120290696 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1171 728 282 22 58 chr1 76904825 76905051 -120290381 - B4A SINE B4 -2 290 73 5 1171 697 376 22 5 chr1 76905231 76905453 -120289979 - B4 SINE B4 -24 268 43 5 1171 366 147 0 0 chr1 76906127 76906195 -120289237 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 5 1171 875 122 7 14 chr1 76906422 76906563 -120288869 - URR1B DNA MER1_type 0 225 86 5 1171 257 134 59 15 chr1 76907454 76907522 -120287910 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 1171 654 58 0 0 chr1 76907799 76907886 -120287546 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1171 463 348 32 42 chr1 76907901 76908117 -120287315 - B4A SINE B4 -12 280 67 5 1171 272 355 46 9 chr1 76908908 76909016 -120286416 - PB1D9 SINE Alu -8 112 1 5 1171 423 0 0 0 chr1 76910426 76910473 -120284959 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1171 477 0 0 0 chr1 76910473 76910525 -120284907 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1171 231 356 181 23 chr1 76911334 76911555 -120283877 - MLT1K LTR MaLR -12 583 328 5 1171 708 281 190 56 chr1 76911717 76912391 -120283041 + Zaphod DNA Tip100 240 1003 -3028 5 1171 449 17 17 0 chr1 76913077 76913135 -120282297 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1171 548 290 132 41 chr1 76913146 76913365 -120282067 - B4 SINE B4 -51 241 3 5 1171 937 298 115 31 chr1 76914304 76914626 -120280806 + MTEb LTR MaLR 6 354 -25 5 1171 203 32 65 0 chr1 76914635 76914666 -120280766 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1171 195 42 0 0 chr1 76915365 76915389 -120280043 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1171 323 381 73 45 chr1 76915590 76915920 -120279512 - ORR1E LTR MaLR -20 339 1 6 1171 1135 207 186 26 chr1 76917127 76917434 -120277998 - ORR1B2 LTR MaLR -9 358 3 6 1171 232 306 69 0 chr1 76918541 76918613 -120276819 - MLT1B LTR MaLR -17 373 297 6 1171 274 368 36 61 chr1 76918686 76918786 -120276646 - MLT1B LTR MaLR -60 330 232 6 1171 212 0 36 0 chr1 76918786 76918814 -120276618 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1171 274 368 36 61 chr1 76918814 76918991 -120276441 - MLT1B LTR MaLR -159 231 61 6 1171 184 186 0 33 chr1 76919929 76919990 -120275442 + CT-rich Low_complexity Low_complexity 3 61 0 6 1171 1087 231 138 15 chr1 76920642 76920968 -120274464 + MTD LTR MaLR 54 419 0 6 1171 260 353 101 62 chr1 76922123 76922301 -120273131 - MLT1L LTR MaLR -106 504 320 6 1171 874 164 7 0 chr1 76922803 76922943 -120272489 + B1_Mur4 SINE Alu 1 141 -9 6 1171 640 253 184 79 chr1 76925949 76926292 -120269140 + MTEa LTR MaLR 1 379 0 6 1171 300 231 0 0 chr1 76926542 76926607 -120268825 + GA-rich Low_complexity Low_complexity 1 65 0 6 1171 300 250 16 31 chr1 76926607 76926735 -120268697 + G-rich Low_complexity Low_complexity 1 126 0 6 1171 518 189 18 30 chr1 76926737 76926906 -120268526 + GA-rich Low_complexity Low_complexity 3 169 0 6 1171 297 0 0 0 chr1 76927359 76927392 -120268040 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1171 513 0 0 0 chr1 76927393 76927450 -120267982 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1171 235 316 122 80 chr1 76927514 76927727 -120267705 - B4 SINE B4 -19 273 52 6 1171 32 26 0 0 chr1 76928330 76928369 -120267063 + AT_rich Low_complexity Low_complexity 1 39 0 6 1171 526 235 14 67 chr1 76928474 76928637 -120266795 + B3A SINE B2 6 158 -58 6 1171 294 29 0 0 chr1 76928637 76928672 -120266760 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1171 521 288 19 66 chr1 76928672 76928697 -120266735 + B3 SINE B2 159 185 -31 6 1171 351 44 0 0 chr1 76928697 76928742 -120266690 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 6 1171 521 288 19 66 chr1 76928742 76928764 -120266668 + B3 SINE B2 186 207 -9 6 1171 320 119 17 0 chr1 76929269 76929328 -120266104 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 6 1171 356 325 48 12 chr1 76929994 76930162 -120265270 - MER45A DNA Tip100 -4 174 1 6 1171 607 167 24 36 chr1 76930817 76931070 -120264362 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 6 1171 505 267 92 0 chr1 76935190 76935310 -120260122 + RSINE1 SINE B4 10 140 -25 6 1171 378 0 0 0 chr1 76935312 76935354 -120260078 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1171 297 100 0 0 chr1 76935354 76935404 -120260028 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1171 326 275 6 38 chr1 76935440 76935599 -120259833 - L1MA5 LINE L1 -14 6286 6133 6 1171 290 278 45 27 chr1 76936402 76936513 -120258919 + ORR1E LTR MaLR 22 134 -225 6 1171 1372 199 28 152 chr1 76936641 76936975 -120258457 - ORR1D1 LTR MaLR 0 374 102 6 1171 1128 82 0 0 chr1 76936975 76937122 -120258310 - B1_Mus2 SINE Alu 0 147 1 6 1171 1372 199 28 152 chr1 76937122 76937214 -120258218 - ORR1D1 LTR MaLR -273 101 1 6 1171 361 361 45 67 chr1 76937304 76937527 -120257905 - MER89 LTR ERV1 -145 414 197 6 1171 206 369 114 15 chr1 76938900 76939032 -120256400 + MIRc SINE MIR 11 155 -113 6 1172 395 296 22 142 chr1 76939389 76939700 -120255732 + L1MEg LINE L1 115 388 -5696 6 1172 408 335 63 34 chr1 76940074 76940343 -120255089 - B4A SINE B4 -15 277 1 6 1172 749 300 52 91 chr1 76941145 76941508 -120253924 - ORR1E LTR MaLR -10 349 1 6 1172 2687 182 5 50 chr1 76943239 76943800 -120251632 - Lx4B LINE L1 -2 7056 6521 6 1172 340 249 0 65 chr1 76943942 76944192 -120251240 + (TATATG)n Simple_repeat Simple_repeat 1 233 0 6 1172 821 264 76 60 chr1 76944197 76944499 -120250933 + RLTR11A2 LTR ERVK 10 316 -211 6 1172 381 347 0 0 chr1 76944598 76944742 -120250690 + (TG)n Simple_repeat Simple_repeat 2 145 0 6 1172 1278 294 82 37 chr1 76944824 76945336 -120250096 - Charlie1a DNA MER1_type -496 959 425 6 1172 378 0 0 0 chr1 76945340 76945382 -120250050 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1172 407 294 127 32 chr1 76945385 76945543 -120249889 + B4A SINE B4 2 174 -118 6 1172 357 93 0 0 chr1 76945596 76945650 -120249782 + (CATA)n Simple_repeat Simple_repeat 4 57 0 6 1172 548 306 0 0 chr1 76945675 76945855 -120249577 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1172 263 281 8 109 chr1 76945902 76946030 -120249402 - Charlie1a DNA MER1_type -1287 168 54 6 1172 264 389 60 8 chr1 76946181 76946430 -120249002 - L2 LINE L2 -908 2511 2250 6 1172 3307 164 112 8 chr1 76946759 76947373 -120248059 - RLTR33 LTR ERVK 0 678 1 6 1172 318 393 42 8 chr1 76948203 76948321 -120247111 - LTR16C LTR ERVL -140 349 228 6 1172 303 356 53 27 chr1 76948809 76948959 -120246473 + MIRb SINE MIR 103 256 -12 6 1172 329 211 60 26 chr1 76949372 76949489 -120245943 - Lx8 LINE L1 0 7473 7353 6 1172 506 301 91 90 chr1 76949505 76950327 -120245105 + L1M2 LINE L1 4144 4966 -1177 6 1172 31 0 0 0 chr1 76950591 76950622 -120244810 + AT_rich Low_complexity Low_complexity 1 31 0 6 1172 228 319 56 95 chr1 76950967 76951199 -120244233 - Lx8 LINE L1 -3 7470 7248 6 1172 900 279 47 10 chr1 76951249 76951549 -120243883 - Lx8 LINE L1 -342 7131 6821 6 1172 405 283 22 0 chr1 76952494 76952586 -120242846 + B3 SINE B2 39 132 -84 6 1172 452 168 8 110 chr1 76952657 76952784 -120242648 + MTC-int LTR MaLR 984 1097 -1 6 1172 2153 212 20 10 chr1 76952785 76953194 -120242238 + MTC LTR MaLR 1 413 -8 6 1172 195 283 57 0 chr1 76956087 76956140 -120239292 + MIR SINE MIR 36 91 -117 6 1172 398 314 0 118 chr1 76957712 76957907 -120237525 - RMER30 DNA MER1_type -23 179 8 6 1172 346 311 39 0 chr1 76959507 76959610 -120235822 + MIRb SINE MIR 115 221 -47 6 1172 694 249 19 63 chr1 76959730 76959936 -120235496 - B3A SINE B2 0 198 2 6 1172 1211 71 0 6 chr1 76960135 76960306 -120235126 + L1Md_T LINE L1 5932 6101 -481 6 1172 852 62 7 1 chr1 76960392 76960529 -120234903 - L1Md_T LINE L1 -609 5973 5833 6 1172 249 275 99 132 chr1 76961227 76961378 -120234054 - MER5B DNA MER1_type -28 150 5 6 1172 216 176 0 0 chr1 76961913 76961981 -120233451 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1172 422 88 94 14 chr1 76962009 76962147 -120233285 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 6 1172 531 187 28 8 chr1 76962162 76962419 -120233013 + (TAGA)n Simple_repeat Simple_repeat 1 262 0 6 1172 454 340 48 20 chr1 76962461 76962608 -120232824 - RSINE1 SINE B4 -14 151 1 6 1172 25 0 0 0 chr1 76962869 76962894 -120232538 + AT_rich Low_complexity Low_complexity 1 25 0 6 1172 226 259 0 0 chr1 76964952 76965010 -120230422 - RMER4A LTR ERVK -253 213 156 6 1172 424 272 65 13 chr1 76965499 76965652 -120229780 + MLT1B LTR MaLR 3 163 -227 6 1172 358 271 101 34 chr1 76965686 76965835 -120229597 + MLT1B LTR MaLR 303 461 -6 6 1172 379 344 54 78 chr1 76966539 76966654 -120228778 + RSINE1 SINE B4 2 124 -41 6 1172 1599 187 69 45 chr1 76966654 76967029 -120228403 + ORR1C2 LTR MaLR 1 384 0 6 1172 379 344 54 78 chr1 76967029 76967080 -120228352 + RSINE1 SINE B4 125 164 -1 6 1172 781 38 19 0 chr1 76967692 76967797 -120227635 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 1172 375 60 0 0 chr1 76967798 76967848 -120227584 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1172 417 354 83 78 chr1 76967852 76968082 -120227350 - B4 SINE B4 -56 236 6 6 1172 23 54 0 0 chr1 76968548 76968585 -120226847 + AT_rich Low_complexity Low_complexity 1 37 0 6 1172 22 0 0 0 chr1 76968864 76968886 -120226546 + AT_rich Low_complexity Low_complexity 1 22 0 6 1172 529 263 169 25 chr1 76970357 76970461 -120224971 + B4A SINE B4 4 122 -170 6 1172 333 0 0 0 chr1 76970461 76970498 -120224934 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1172 529 263 169 25 chr1 76970498 76970635 -120224797 + B4A SINE B4 123 280 -12 6 1172 378 0 0 0 chr1 76970645 76970687 -120224745 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1172 25 31 0 0 chr1 76970703 76970735 -120224697 + AT_rich Low_complexity Low_complexity 1 32 0 6 1172 219 69 0 0 chr1 76971017 76971046 -120224386 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1172 221 0 0 33 chr1 76972642 76972672 -120222760 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1172 395 314 29 0 chr1 76972781 76972918 -120222514 - MER5A1 DNA MER1_type 0 166 26 6 1172 193 308 0 30 chr1 76973876 76973943 -120221489 + L2c LINE L2 3273 3337 -50 6 1172 571 258 91 0 chr1 76973984 76974116 -120221316 + B1_Mur1 SINE Alu 6 149 0 6 1172 332 286 8 125 chr1 76974161 76974289 -120221143 + B3A SINE B2 70 182 -16 6 1172 25 51 0 0 chr1 76974333 76974372 -120221060 + AT_rich Low_complexity Low_complexity 1 39 0 6 1172 337 263 0 78 chr1 76974405 76974508 -120220924 + PB1D9 SINE Alu 26 120 0 6 1172 1160 207 86 52 chr1 76974527 76974935 -120220497 - Lx7 LINE L1 0 7696 7275 6 1172 21 0 0 0 chr1 76974946 76974967 -120220465 + AT_rich Low_complexity Low_complexity 1 21 0 6 1172 22 35 0 0 chr1 76975434 76975463 -120219969 + AT_rich Low_complexity Low_complexity 1 29 0 6 1172 366 309 30 38 chr1 76975516 76975647 -120219785 - B3 SINE B2 -14 202 73 6 1172 462 282 121 19 chr1 76975713 76975970 -120219462 - B4 SINE B4 -6 286 4 6 1172 1228 35 7 0 chr1 76976701 76976846 -120218586 + B1_Mus2 SINE Alu 1 146 -1 6 1172 26 0 0 0 chr1 76977852 76977878 -120217554 + AT_rich Low_complexity Low_complexity 1 26 0 6 1172 671 269 0 51 chr1 76977886 76978043 -120217389 + B1_Mur1 SINE Alu 1 149 0 6 1172 297 0 0 0 chr1 76978460 76978493 -120216939 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 6 1172 1054 285 21 3 chr1 76979272 76979557 -120215875 - B4A SINE B4 -2 290 1 6 1172 191 368 87 9 chr1 76979592 76979707 -120215725 - MIRc SINE MIR -55 213 90 6 1172 24 85 0 0 chr1 76980001 76980060 -120215372 + AT_rich Low_complexity Low_complexity 1 59 0 6 1172 1207 75 0 0 chr1 76980901 76981048 -120214384 - B1_Mm SINE Alu 0 147 1 6 1172 23 86 0 0 chr1 76981441 76981499 -120213933 + AT_rich Low_complexity Low_complexity 1 58 0 6 1172 250 344 151 7 chr1 76982417 76982569 -120212863 + MER5B DNA MER1_type 2 175 -3 6 1172 829 227 192 28 chr1 76983106 76983423 -120212009 + ORR1D2 LTR MaLR 2 370 0 7 1172 200 111 0 27 chr1 76983449 76983486 -120211946 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 7 1172 183 146 0 0 chr1 76984068 76984109 -120211323 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1172 318 26 0 0 chr1 76984111 76984150 -120211282 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1172 309 373 34 8 chr1 76984563 76984682 -120210750 + RSINE1 SINE B4 43 164 -1 7 1172 267 31 0 0 chr1 76984692 76984724 -120210708 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1172 22 0 0 0 chr1 76984870 76984892 -120210540 + AT_rich Low_complexity Low_complexity 1 22 0 7 1172 452 299 0 30 chr1 76985600 76985731 -120209701 - RSINE1 SINE B4 -37 128 2 7 1172 311 282 147 17 chr1 76987338 76987515 -120207917 + L2 LINE L2 2288 2487 -932 7 1172 340 294 76 112 chr1 76988297 76988324 -120207108 - MLT2B1 LTR ERVL -4 551 528 7 1172 234 0 0 0 chr1 76988324 76988350 -120207082 + (CATA)n Simple_repeat Simple_repeat 2 27 0 7 1172 869 308 92 74 chr1 76988350 76988841 -120206591 - MLT2B1 LTR ERVL -28 527 3 7 1172 2662 115 19 17 chr1 76989578 76989995 -120205437 + Lx3A LINE L1 6555 6972 -9 7 1172 316 348 106 91 chr1 76990447 76990864 -120204568 - MLT1F2 LTR MaLR -69 491 69 7 1172 3797 44 6 2 chr1 76991575 76992057 -120203375 - L1_Mm LINE L1 -104 5779 5296 7 1172 5344 27 3 2 chr1 76992057 76992689 -120202743 + L1Md_F3 LINE L1 5951 6583 -1 7 1172 549 218 0 0 chr1 76993764 76993888 -120201544 + (TA)n Simple_repeat Simple_repeat 2 125 0 7 1172 224 211 35 0 chr1 76993967 76994024 -120201408 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1172 225 196 0 0 chr1 76994067 76994113 -120201319 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1172 243 218 0 0 chr1 76994113 76994168 -120201264 + GA-rich Low_complexity Low_complexity 3 57 0 7 1172 833 275 38 29 chr1 76994173 76994383 -120201049 - B4A SINE B4 -79 213 2 7 1172 611 303 60 33 chr1 76995030 76995395 -120200037 - L1MA5 LINE L1 -121 6179 5805 7 1172 219 286 0 0 chr1 76995987 76996036 -120199396 - L2c LINE L2 -223 3164 3116 7 1172 1216 277 35 114 chr1 76997155 76997612 -120197820 - MTC LTR MaLR 0 421 1 7 1172 282 225 56 0 chr1 76997619 76997690 -120197742 - MER53 DNA hAT -95 98 24 7 1172 279 250 48 48 chr1 76997620 76997704 -120197728 + MER53 DNA hAT 107 190 -3 7 1172 847 204 41 0 chr1 76998202 76998374 -120197058 + URR1A DNA MER1_type 48 226 0 7 1172 7198 75 5 2 chr1 76998437 76999996 -120195436 - L1_Mus1 LINE L1 -2 6652 5009 7 1172 12478 98 37 19 chr1 77000003 77000135 -120195297 - L1_Mm LINE L1 -876 5007 4876 1 1172 1258 88 0 11 chr1 77000135 77000319 -120195113 + L1Md_F2 LINE L1 6388 6569 -13 2 1172 12478 98 37 19 chr1 77000319 77002227 -120193205 - L1_Mm LINE L1 -1008 4875 2930 1 1172 615 51 0 0 chr1 77002684 77002763 -120192669 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1172 226 213 0 21 chr1 77003203 77003251 -120192181 - MIR3 SINE MIR -37 171 125 4 1172 369 0 0 0 chr1 77005269 77005310 -120190122 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1172 465 338 50 50 chr1 77005331 77005431 -120190001 + Lx8 LINE L1 6987 7080 -393 6 1172 342 0 0 0 chr1 77005431 77005469 -120189963 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1172 465 338 50 50 chr1 77005469 77005732 -120189700 + Lx8 LINE L1 7081 7350 -123 6 1172 225 0 0 0 chr1 77005936 77005961 -120189471 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 1172 186 43 0 0 chr1 77006866 77006889 -120188543 + (TCC)n Simple_repeat Simple_repeat 2 24 0 9 1172 286 100 33 0 chr1 77008076 77008136 -120187296 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 1 1172 1002 283 40 43 chr1 77008427 77008803 -120186629 + MLT1B LTR MaLR 16 390 0 1 1172 22 56 0 0 chr1 77010761 77010797 -120184635 + AT_rich Low_complexity Low_complexity 1 36 0 1 1172 322 202 75 0 chr1 77010836 77010930 -120184502 - Lx6 LINE L1 0 7460 7360 1 1172 203 372 50 14 chr1 77011109 77011248 -120184184 + MER5A DNA MER1_type 15 158 -31 1 1172 385 310 118 21 chr1 77011466 77011796 -120183636 + L1MC4a LINE L1 7094 7455 -427 1 1172 450 0 0 0 chr1 77011997 77012047 -120183385 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1172 528 263 68 0 chr1 77012055 77012173 -120183259 + RSINE1 SINE B4 2 127 -38 1 1172 377 51 0 33 chr1 77012189 77012250 -120183182 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 1172 473 32 16 0 chr1 77012252 77012315 -120183117 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1172 375 233 98 43 chr1 77012319 77012503 -120182929 + L1MC4a LINE L1 7673 7866 -16 1 1172 407 78 25 25 chr1 77014143 77014222 -120181210 + (TCC)n Simple_repeat Simple_repeat 1 79 0 2 1172 211 299 13 25 chr1 77014246 77014325 -120181107 + CT-rich Low_complexity Low_complexity 6 83 0 2 1172 467 147 0 52 chr1 77014653 77014768 -120180664 - L1Md_F2 LINE L1 0 6582 6474 2 1172 217 355 0 0 chr1 77014792 77014854 -120180578 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1172 433 274 40 0 chr1 77015209 77015333 -120180099 + MER5A1 DNA MER1_type 38 166 0 2 1172 192 286 79 0 chr1 77015386 77015449 -120179983 + MER5A DNA MER1_type 90 157 -32 1 1172 222 337 32 32 chr1 77015558 77015653 -120179779 - MER5B DNA MER1_type -1 177 83 2 1172 192 261 81 91 chr1 77015724 77015922 -120179510 + L2a LINE L2 928 1123 -2296 2 1172 644 291 208 92 chr1 77016034 77016500 -120178932 + RMER15 LTR ERVL 56 575 0 2 1172 924 234 20 20 chr1 77017388 77017589 -120177843 + B3 SINE B2 16 216 0 2 1172 627 309 53 108 chr1 77017761 77018102 -120177330 - ORR1E LTR MaLR -37 322 1 2 1172 236 371 91 19 chr1 77018124 77018388 -120177044 + L2a LINE L2 2331 2613 -806 2 1172 213 262 0 16 chr1 77018563 77018625 -120176807 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1172 243 379 4 65 chr1 77018880 77019109 -120176323 + L2a LINE L2 2951 3165 -261 2 1172 1106 316 62 12 chr1 77019325 77019664 -120175768 - ORR1E LTR MaLR 0 359 4 3 1172 271 353 0 12 chr1 77019712 77019798 -120175634 + L2a LINE L2 3295 3379 -47 2 1172 1252 34 11 17 chr1 77021273 77021454 -120173978 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1172 209 246 49 0 chr1 77021531 77021592 -120173840 + (CATG)n Simple_repeat Simple_repeat 3 66 0 3 1172 429 20 0 0 chr1 77022259 77022309 -120173123 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1172 611 65 11 0 chr1 77022348 77022441 -120172991 + (GA)n Simple_repeat Simple_repeat 2 95 0 3 1172 198 322 90 10 chr1 77022918 77023042 -120172390 + MIRb SINE MIR 32 165 -111 3 1172 818 273 0 132 chr1 77023579 77023912 -120171520 + B4 SINE B4 1 289 -3 3 1172 404 37 19 0 chr1 77023938 77023992 -120171440 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 3 1172 257 348 16 56 chr1 77026380 77026505 -120168927 - MLT1H-int LTR MaLR -1115 294 175 3 1172 1652 188 196 13 chr1 77026733 77026748 -120168684 - Lx7 LINE L1 -778 6918 6893 4 1172 369 43 0 0 chr1 77026748 77026795 -120168637 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1172 1652 188 196 13 chr1 77026795 77027227 -120168205 - Lx7 LINE L1 -804 6892 6389 4 1172 18059 174 33 50 chr1 77027225 77027397 -120168035 - Lx7 LINE L1 -1518 5942 5780 4 1172 811 168 80 0 chr1 77027397 77027534 -120167898 - B1_Mur4 SINE Alu -1 149 2 4 1172 18059 159 43 30 chr1 77027534 77029678 -120165754 - Lx7 LINE L1 -94 5786 3590 4 1172 1317 90 11 5 chr1 77029678 77029867 -120165565 + B2_Mm1t SINE B2 1 190 -3 4 1172 18059 159 43 30 chr1 77029867 77031291 -120164141 - Lx7 LINE L1 -2291 3589 2155 4 1172 429 36 0 0 chr1 77031291 77031346 -120164086 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1172 18059 159 43 30 chr1 77031346 77031441 -120163991 - Lx7 LINE L1 -3726 2154 2059 4 1172 267 31 0 0 chr1 77031441 77031473 -120163959 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1172 18059 159 43 30 chr1 77031473 77031584 -120163848 - Lx7 LINE L1 -3822 2058 1939 4 1172 1487 223 125 43 chr1 77031580 77032067 -120163365 - Lx7 LINE L1 -6926 802 276 4 1172 272 285 19 19 chr1 77034123 77034277 -120161155 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 1172 342 45 0 0 chr1 77035382 77035426 -120160006 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1172 237 303 111 22 chr1 77035928 77036063 -120159369 - L2a LINE L2 -14 3412 3266 4 1172 291 248 202 17 chr1 77036974 77037093 -120158339 + MLT1K LTR MaLR 423 563 -32 4 1172 2664 142 12 2 chr1 77037429 77037846 -120157586 - MTC LTR MaLR 0 421 1 5 1172 555 16 0 0 chr1 77038101 77038165 -120157267 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 5 1172 975 146 23 3 chr1 77038171 77038484 -120156948 + GA-rich Low_complexity Low_complexity 1 319 0 5 1172 187 133 22 22 chr1 77038513 77038559 -120156873 + GA-rich Low_complexity Low_complexity 2 47 0 5 1172 478 286 14 56 chr1 77038716 77038746 -120156686 - L1MC1 LINE L1 -84 6249 6220 5 1172 2235 207 189 8 chr1 77038746 77039370 -120156062 + RMER19A LTR ERVK 1 737 0 5 1172 478 286 14 56 chr1 77039370 77039554 -120155878 - L1MC1 LINE L1 -114 6219 6044 5 1172 349 330 0 9 chr1 77039590 77039700 -120155732 + PB1D10 SINE Alu 1 109 -8 5 1172 351 0 0 0 chr1 77040600 77040639 -120154793 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1172 33 0 0 0 chr1 77041447 77041480 -120153952 + AT_rich Low_complexity Low_complexity 1 33 0 5 1172 414 57 0 0 chr1 77041558 77041611 -120153821 + (TAA)n Simple_repeat Simple_repeat 3 55 0 5 1172 205 290 29 14 chr1 77041621 77041691 -120153741 + MIR3 SINE MIR 86 156 -52 5 1172 235 346 28 18 chr1 77042435 77042544 -120152888 - MER5A DNA MER1_type -41 148 39 6 1172 189 171 0 0 chr1 77044058 77044093 -120151339 + GA-rich Low_complexity Low_complexity 2 36 0 6 1172 245 353 0 0 chr1 77046719 77046787 -120148645 + ID4 SINE ID 15 82 -1 6 1172 260 171 12 0 chr1 77046788 77046870 -120148562 + A-rich Low_complexity Low_complexity 3 85 0 6 1172 351 0 0 0 chr1 77047486 77047525 -120147907 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1172 826 220 25 25 chr1 77048707 77048945 -120146487 + Lx7 LINE L1 7076 7313 -383 6 1172 336 24 0 0 chr1 77048957 77048998 -120146434 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1172 459 0 0 0 chr1 77048998 77049048 -120146384 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1172 248 257 10 29 chr1 77049126 77049230 -120146202 + Lx7 LINE L1 7578 7679 -17 6 1172 1667 241 24 11 chr1 77049293 77049667 -120145765 - MTE2b LTR MaLR 0 379 1 6 1172 216 0 0 0 chr1 77050180 77050204 -120145228 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1172 21 0 0 0 chr1 77050445 77050466 -120144966 + AT_rich Low_complexity Low_complexity 1 21 0 7 1172 245 277 156 40 chr1 77051371 77051544 -120143888 + L2a LINE L2 3223 3415 -11 7 1172 1273 200 191 17 chr1 77051781 77052137 -120143295 + MTD LTR MaLR 1 418 -1 7 1172 380 330 103 37 chr1 77052432 77052775 -120142657 + MLT1A1 LTR MaLR 2 408 0 7 1172 382 355 52 6 chr1 77053874 77054047 -120141385 + MIRb SINE MIR 29 209 -59 7 1172 522 248 37 20 chr1 77054462 77054599 -120140833 - MTEa LTR MaLR -23 396 248 7 1172 511 361 37 83 chr1 77054703 77055128 -120140304 + MTE-int LTR MaLR 988 1544 -36 7 1172 538 239 0 11 chr1 77055789 77055967 -120139465 + CT-rich Low_complexity Low_complexity 5 180 0 7 1172 199 214 14 14 chr1 77055999 77056070 -120139362 + CT-rich Low_complexity Low_complexity 2 72 0 7 1172 356 59 0 19 chr1 77056519 77056571 -120138861 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 7 1172 606 69 30 0 chr1 77056697 77056798 -120138634 + (GA)n Simple_repeat Simple_repeat 2 105 0 7 1172 24 53 0 0 chr1 77057365 77057403 -120138029 + AT_rich Low_complexity Low_complexity 1 38 0 8 1172 205 325 119 8 chr1 77058753 77058871 -120136561 - L2b LINE L2 -2 3373 3243 8 1172 2354 114 80 0 chr1 77059351 77059737 -120135695 + MT2B2 LTR ERVL 89 505 -79 8 1172 1979 106 6 6 chr1 77060427 77060740 -120134692 - MT-int LTR MaLR -118 980 668 8 1172 203 254 16 0 chr1 77061145 77061208 -120134224 + (CAG)n Simple_repeat Simple_repeat 1 64 0 8 1172 1724 216 36 71 chr1 77061224 77061718 -120133714 - RMER13A LTR ERVK -238 622 146 8 1172 547 230 33 56 chr1 77061720 77061947 -120133485 - RMER13B LTR ERVK -372 270 5 8 1172 1081 149 123 11 chr1 77062010 77062226 -120133206 + Lx3B LINE L1 6760 6999 -1 8 1172 206 222 0 0 chr1 77063899 77063935 -120131497 + polypyrimidine Low_complexity Low_complexity 5 40 0 8 1172 747 246 37 28 chr1 77065069 77065298 -120130134 - ORR1E LTR MaLR -20 359 106 8 1172 1071 114 0 0 chr1 77067213 77067449 -120127983 + (TTC)n Simple_repeat Simple_repeat 1 236 0 9 1172 641 236 0 0 chr1 77067482 77067609 -120127823 - B3 SINE B2 -86 130 4 9 1172 1176 318 64 26 chr1 77067650 77068041 -120127391 - Lx5 LINE L1 -133 6917 6512 9 1172 666 37 0 0 chr1 77068152 77068233 -120127199 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 9 1173 324 229 83 25 chr1 77070547 77070668 -120124764 - B1F SINE Alu 0 149 22 9 1173 761 226 56 11 chr1 77070583 77070762 -120124670 - ID_B1 SINE B4 -37 187 1 9 1173 222 37 0 0 chr1 77071797 77071824 -120123608 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1173 261 276 141 79 chr1 77073010 77073301 -120122131 - Arthur1 DNA Tip100 -28 3919 3611 9 1173 253 329 70 56 chr1 77073455 77073489 -120121943 - Arthur1 DNA Tip100 -517 3430 3397 9 1173 2391 71 3 3 chr1 77073489 77073800 -120121632 - L1_Mus2 LINE L1 0 6566 6256 9 1173 253 329 70 56 chr1 77073800 77074035 -120121397 - Arthur1 DNA Tip100 -551 3396 3157 9 1173 452 319 31 26 chr1 77074132 77074325 -120121107 - Arthur1 DNA Tip100 -3255 692 499 9 1173 533 317 26 61 chr1 77074653 77074765 -120120667 + MER97c DNA MER1_type? 14 122 -968 9 1173 1111 42 21 0 chr1 77074765 77074908 -120120524 + L1Md_T LINE L1 6435 6580 -2 1 1173 533 317 26 61 chr1 77074908 77075138 -120120294 + MER97c DNA MER1_type? 123 344 -746 9 1173 233 318 82 34 chr1 77075197 77075405 -120120027 + L2 LINE L2 2504 2721 -698 1 1173 267 303 139 71 chr1 77075482 77075763 -120119669 + Lx8 LINE L1 7171 7470 -3 1 1173 283 231 93 62 chr1 77076098 77076227 -120119205 - B4A SINE B4 -159 133 1 1 1173 258 32 0 0 chr1 77076374 77076405 -120119027 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1173 626 260 57 33 chr1 77076834 77077045 -120118387 - B3 SINE B2 0 216 1 1 1173 360 0 0 0 chr1 77077093 77077133 -120118299 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1173 235 133 30 91 chr1 77077152 77077251 -120118181 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 1 1173 217 307 26 13 chr1 77077681 77077757 -120117675 - MIR SINE MIR -141 121 45 1 1173 875 150 5 0 chr1 77077925 77078139 -120117293 + (TG)n Simple_repeat Simple_repeat 1 215 0 1 1173 666 0 0 0 chr1 77079463 77079537 -120115895 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 1173 195 318 44 22 chr1 77079642 77079732 -120115700 + MIRb SINE MIR 40 131 -137 1 1173 204 296 41 27 chr1 77080247 77080320 -120115112 - L2b LINE L2 -64 3311 3238 1 1173 416 248 156 0 chr1 77081380 77081521 -120113911 + URR1B DNA MER1_type 1 163 -62 1 1173 180 0 0 0 chr1 77083550 77083570 -120111862 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1173 279 0 0 0 chr1 77083629 77083660 -120111772 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1173 4835 97 8 33 chr1 77083701 77084428 -120111004 - Lx3_Mus LINE L1 -1 7008 6300 1 1173 196 406 31 15 chr1 77084849 77084979 -120110453 + MIR SINE MIR 13 144 -118 1 1173 255 295 0 50 chr1 77085273 77085373 -120110059 + MLT1C LTR MaLR 1 95 -313 1 1173 519 324 87 41 chr1 77085676 77086020 -120109412 + MLT1C LTR MaLR 108 467 0 1 1173 318 115 0 0 chr1 77086413 77086474 -120108958 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1173 198 363 13 33 chr1 77087781 77087932 -120107500 + L3 LINE CR1 3958 4105 -384 1 1173 207 100 0 0 chr1 77088670 77088700 -120106732 + (CG)n Simple_repeat Simple_repeat 2 31 0 1 1173 229 198 24 24 chr1 77088758 77088877 -120106555 + (TTTG)n Simple_repeat Simple_repeat 1 119 0 1 1173 346 309 0 0 chr1 77088903 77088987 -120106445 - B4A SINE B4 -207 85 2 1 1173 1169 82 0 0 chr1 77089094 77089241 -120106191 + B1_Mus1 SINE Alu 2 148 0 1 1173 518 221 14 0 chr1 77089246 77089391 -120106041 + GA-rich Low_complexity Low_complexity 2 148 0 1 1173 25 0 0 0 chr1 77090962 77090987 -120104445 + AT_rich Low_complexity Low_complexity 1 25 0 1 1173 484 242 349 6 chr1 77091080 77091246 -120104186 + ID_B1 SINE B4 2 224 0 1 1173 355 230 14 0 chr1 77091266 77091340 -120104092 + 5S rRNA rRNA 4 78 -43 1 1173 2080 149 51 27 chr1 77091397 77091810 -120103622 + RMER6A LTR ERVK 333 755 -1 1 1173 3235 55 8 0 chr1 77092599 77092996 -120102436 + MTB LTR MaLR 1 400 0 1 1173 3627 179 68 106 chr1 77093261 77094185 -120101247 + RMER19B LTR ERVK 1 889 -13 1 1173 478 303 49 0 chr1 77094394 77094536 -120100896 + RSINE1 SINE B4 17 165 0 1 1173 50 18 0 0 chr1 77094644 77094701 -120100731 + AT_rich Low_complexity Low_complexity 1 57 0 1 1173 231 61 0 0 chr1 77096862 77096895 -120098537 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1173 318 26 0 0 chr1 77097075 77097114 -120098318 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1173 22 0 0 0 chr1 77097219 77097241 -120098191 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 21 0 0 0 chr1 77097767 77097788 -120097644 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 262 275 11 11 chr1 77097824 77097916 -120097516 - MARNA DNA Mariner -352 234 143 1 1173 377 39 20 0 chr1 77099584 77099635 -120095797 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1173 450 65 0 0 chr1 77100028 77100090 -120095342 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1173 564 227 187 1 chr1 77101220 77101388 -120094044 - ID_B1 SINE B4 -21 203 3 1 1173 432 0 0 0 chr1 77101782 77101830 -120093602 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1173 393 296 6 53 chr1 77102377 77102548 -120092884 + L1MC4 LINE L1 6829 6991 -891 1 1173 294 278 25 107 chr1 77102621 77102742 -120092690 - PB1D9 SINE Alu 0 120 10 1 1173 634 260 80 0 chr1 77102653 77102803 -120092629 - ID_B1 SINE B4 -45 179 18 1 1173 538 266 97 40 chr1 77102852 77103130 -120092302 + L1MC4 LINE L1 7136 7429 -613 1 1173 246 208 0 0 chr1 77103149 77103197 -120092235 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1173 962 171 0 5 chr1 77103377 77103600 -120091832 + GA-rich Low_complexity Low_complexity 1 221 0 1 1173 299 377 65 30 chr1 77105278 77105508 -120089924 + MIRb SINE MIR 10 247 -21 1 1173 283 355 27 0 chr1 77106131 77106241 -120089191 + MLT1J1 LTR MaLR 55 167 -277 1 1173 761 182 168 20 chr1 77109154 77109350 -120086082 - URR1B DNA MER1_type 0 225 1 1 1173 277 229 57 0 chr1 77109450 77109520 -120085912 - L1_Mm LINE L1 -320 5563 5490 1 1173 7853 66 37 2 chr1 77109519 77110588 -120084844 + L1_Mus3 LINE L1 5534 6637 -1 1 1173 21 36 0 0 chr1 77110593 77110621 -120084811 + AT_rich Low_complexity Low_complexity 1 28 0 1 1173 601 311 0 6 chr1 77110756 77110918 -120084514 + RSINE1 SINE B4 3 163 -2 1 1173 684 206 90 43 chr1 77111187 77111375 -120084057 + B3A SINE B2 1 197 -1 1 1173 4802 76 13 0 chr1 77111490 77112115 -120083317 - L1_Mus3 LINE L1 -3 6635 6003 1 1173 333 382 49 56 chr1 77113984 77114250 -120081182 - MLT1D LTR MaLR -130 375 112 1 1173 3527 52 2 5 chr1 77114311 77114755 -120080677 - L1Md_F2 LINE L1 0 6582 6140 1 1173 6790 29 1 2 chr1 77114755 77115872 -120079560 + L1Md_A LINE L1 5045 6160 -422 1 1173 232 262 85 24 chr1 77115984 77116028 -120079404 + MTEb LTR MaLR 279 324 -55 1 1173 195 42 0 0 chr1 77116028 77116052 -120079380 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1 1173 232 262 85 24 chr1 77116052 77116089 -120079343 + MTEb LTR MaLR 325 364 -15 1 1173 342 278 31 10 chr1 77116104 77116202 -120079230 - MLT1D LTR MaLR -372 133 34 1 1173 1943 166 18 78 chr1 77116431 77116828 -120078604 + ORR1B1 LTR MaLR 25 394 0 1 1173 354 45 0 0 chr1 77117961 77118005 -120077427 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1173 361 302 46 6 chr1 77118006 77118179 -120077253 - Lx8 LINE L1 -85 7388 7209 1 1173 877 254 54 47 chr1 77118568 77118865 -120076567 + MER58B DNA MER1_type 31 329 -12 1 1173 477 341 33 6 chr1 77118916 77119096 -120076336 + ID_B1 SINE B4 39 223 -1 1 1173 247 291 108 44 chr1 77119404 77119562 -120075870 + MLT1B LTR MaLR 59 226 -164 1 1173 748 275 109 21 chr1 77119568 77119749 -120075683 + B3 SINE B2 1 202 -14 1 1173 306 0 0 0 chr1 77119749 77119783 -120075649 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 1173 748 275 109 21 chr1 77119783 77119794 -120075638 + B3 SINE B2 203 210 -6 1 1173 195 42 0 0 chr1 77119913 77119937 -120075495 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1 1173 2340 122 8 16 chr1 77119952 77120319 -120075113 - Lx4A LINE L1 -5 7053 6690 1 1173 353 313 103 16 chr1 77121988 77122173 -120073259 + MIR SINE MIR 41 241 -21 1 1173 773 214 148 6 chr1 77122237 77122420 -120073012 + B3 SINE B2 2 210 -6 1 1173 307 331 113 0 chr1 77123722 77123846 -120071586 + MIR SINE MIR 15 152 -110 1 1173 194 328 61 69 chr1 77123866 77123997 -120071435 + L2c LINE L2 3230 3353 -34 1 1173 207 0 0 0 chr1 77124005 77124028 -120071404 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1173 491 57 45 0 chr1 77124028 77124116 -120071316 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 1173 262 169 30 30 chr1 77124117 77124184 -120071248 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 1 1173 267 154 0 0 chr1 77124193 77124258 -120071174 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1173 988 306 55 25 chr1 77124305 77124741 -120070691 - Charlie4a DNA MER1_type 0 508 60 1 1173 1286 299 22 37 chr1 77125695 77126289 -120069143 - L1MA5 LINE L1 -459 5841 5257 1 1173 22 0 0 0 chr1 77126821 77126843 -120068589 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 315 0 0 0 chr1 77127417 77127452 -120067980 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1173 806 203 0 0 chr1 77127855 77127998 -120067434 - B1_Mur4 SINE Alu -7 143 1 1 1173 211 320 27 0 chr1 77128964 77129039 -120066393 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1173 293 186 14 0 chr1 77129718 77129788 -120065644 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1 1173 1198 137 107 5 chr1 77130286 77130491 -120064941 - URR1A DNA MER1_type 0 226 1 1 1173 948 90 67 7 chr1 77131236 77131371 -120064061 + B1_Mm SINE Alu 3 145 -2 1 1173 1296 188 94 34 chr1 77131395 77131692 -120063740 - RLTR46 LTR ERVK -5 315 1 1 1173 284 303 57 64 chr1 77131774 77131915 -120063517 - B4 SINE B4 0 292 153 1 1173 223 167 0 0 chr1 77132215 77132257 -120063175 + T-rich Low_complexity Low_complexity 1 42 0 1 1173 843 142 15 7 chr1 77132257 77132392 -120063040 - B1_Mur2 SINE Alu 0 149 14 1 1173 392 0 21 0 chr1 77132855 77132903 -120062529 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1173 26 0 0 0 chr1 77134980 77135006 -120060426 + AT_rich Low_complexity Low_complexity 1 26 0 1 1173 953 181 2 0 chr1 77135006 77135185 -120060247 - L1_Mur3 LINE L1 -647 5665 5450 1 1173 326 372 12 49 chr1 77135239 77135403 -120060029 + L1M5 LINE L1 5495 5652 -472 1 1173 406 339 8 0 chr1 77135708 77135838 -120059594 - MIR SINE MIR -111 151 21 1 1173 336 48 0 0 chr1 77136277 77136319 -120059113 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1 1173 372 280 48 121 chr1 77136321 77136336 -120059096 - B4A SINE B4 -56 236 197 1 1173 789 175 7 21 chr1 77136336 77136476 -120058956 - B1_Mur4 SINE Alu -6 144 7 2 1173 372 280 48 121 chr1 77136476 77136528 -120058904 - B4A SINE B4 -56 196 45 1 1173 468 314 16 33 chr1 77136551 77136795 -120058637 + Lx8 LINE L1 7229 7468 -5 2 1173 23 33 0 0 chr1 77136795 77136825 -120058607 + AT_rich Low_complexity Low_complexity 1 30 0 2 1173 619 34 34 0 chr1 77136869 77136958 -120058474 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 2 1173 1280 314 28 40 chr1 77139179 77139859 -120055573 + Lx9 LINE L1 6701 7372 -272 2 1173 180 222 73 18 chr1 77140937 77140992 -120054440 - L3 LINE CR1 -2282 2207 2150 2 1173 543 263 68 22 chr1 77141114 77141289 -120054143 + B3A SINE B2 11 178 -38 2 1173 575 159 0 0 chr1 77141329 77141417 -120054015 + 5S rRNA rRNA 3 90 -31 2 1173 234 0 0 0 chr1 77141688 77141714 -120053718 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1173 216 0 0 0 chr1 77143096 77143120 -120052312 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1173 492 18 0 0 chr1 77143120 77143176 -120052256 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1173 416 267 133 0 chr1 77143438 77143543 -120051889 + RSINE1 SINE B4 2 120 -45 2 1173 401 95 0 16 chr1 77143555 77143619 -120051813 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1173 495 0 0 0 chr1 77143619 77143673 -120051759 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1173 2026 161 62 13 chr1 77144673 77145045 -120050387 + ORR1B1 LTR MaLR 1 390 -4 2 1173 405 281 0 0 chr1 77145519 77145633 -120049799 + L1_Mur3 LINE L1 4647 4760 -1120 2 1173 1819 183 33 33 chr1 77145639 77146034 -120049398 + RLTR28B LTR ERVL 1 395 -86 2 1173 408 243 18 0 chr1 77146214 77146325 -120049107 + RMER1B Other Other 44 156 -910 2 1173 1287 214 49 29 chr1 77146303 77146538 -120048894 + RMER1B Other Other 702 941 -125 2 1173 216 0 0 0 chr1 77146538 77146562 -120048870 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1173 1287 214 49 29 chr1 77146562 77146673 -120048759 + RMER1B Other Other 942 1054 -12 2 1173 418 176 0 51 chr1 77146688 77146766 -120048666 + RLTR28B LTR ERVL 383 456 -25 2 1173 265 170 0 19 chr1 77146766 77146820 -120048612 + L1_Mm LINE L1 4773 4825 -1058 2 1173 375 348 6 19 chr1 77146833 77146994 -120048438 + L1M2 LINE L1 4977 5135 -1008 2 1173 261 250 25 12 chr1 77147012 77147093 -120048339 + L1MA4A LINE L1 5194 5275 -871 2 1173 276 204 33 22 chr1 77147132 77147222 -120048210 + L1MA4A LINE L1 5334 5424 -700 2 1173 829 222 52 6 chr1 77147281 77147453 -120047979 + B3A SINE B2 1 180 -18 2 1173 1589 250 34 34 chr1 77147485 77147990 -120047442 + RLTR16 LTR ERVK 1 505 0 2 1173 580 247 121 45 chr1 77148024 77148412 -120047020 + L1MA4A LINE L1 5487 5906 -397 2 1173 505 309 32 0 chr1 77148957 77149080 -120046352 - ID_B1 SINE B4 -1 223 97 2 1173 306 148 0 0 chr1 77149080 77149134 -120046298 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1173 241 369 0 0 chr1 77149755 77149820 -120045612 + RSINE1 SINE B4 1 65 -100 2 1173 802 275 75 32 chr1 77150766 77151044 -120044388 + B4 SINE B4 1 290 -2 2 1173 782 294 120 12 chr1 77151141 77151465 -120043967 - ORR1E LTR MaLR 0 359 1 2 1173 2314 180 20 44 chr1 77152058 77152598 -120042834 + RLTR11A2 LTR ERVK 1 527 0 2 1173 669 341 66 4 chr1 77152682 77152938 -120042494 + B4A SINE B4 2 273 -19 2 1173 593 307 27 0 chr1 77154655 77154805 -120040627 + B3A SINE B2 3 156 -42 2 1173 288 111 0 0 chr1 77154815 77154869 -120040563 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1173 1192 55 0 0 chr1 77155524 77155670 -120039762 + B1_Mm SINE Alu 2 147 0 2 1173 219 133 0 0 chr1 77155670 77155715 -120039717 + (A)n Simple_repeat Simple_repeat 1 45 0 2 1173 560 325 24 6 chr1 77155854 77156018 -120039414 - B3A SINE B2 -27 171 5 2 1173 249 83 0 0 chr1 77156020 77156056 -120039376 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1173 27 29 0 0 chr1 77156069 77156103 -120039329 + AT_rich Low_complexity Low_complexity 1 34 0 2 1173 811 219 54 11 chr1 77156136 77156321 -120039111 - B3 SINE B2 0 216 24 2 1173 21 0 0 0 chr1 77156637 77156658 -120038774 + AT_rich Low_complexity Low_complexity 1 21 0 2 1173 847 174 28 0 chr1 77156669 77156813 -120038619 - B1_Mus1 SINE Alu 0 148 1 2 1173 608 292 127 21 chr1 77157208 77157540 -120037892 - MLT1B LTR MaLR -18 372 6 2 1173 799 291 56 70 chr1 77157578 77157933 -120037499 - RMER15 LTR ERVL -14 561 212 2 1173 195 100 0 0 chr1 77158694 77158724 -120036708 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 2 1173 968 301 83 87 chr1 77158939 77159586 -120035846 - Lx8 LINE L1 -2 7471 6827 2 1173 379 198 167 0 chr1 77159688 77159784 -120035648 - PB1D7 SINE Alu -8 112 1 2 1173 198 71 0 0 chr1 77160346 77160374 -120035058 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1173 182 118 29 0 chr1 77160390 77160424 -120035008 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1173 977 312 7 15 chr1 77160476 77160746 -120034686 - B4A SINE B4 -23 269 2 2 1173 199 122 20 20 chr1 77160814 77160864 -120034568 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 2 1173 306 223 46 172 chr1 77160866 77161104 -120034328 + L1M2 LINE L1 4636 4843 -1300 2 1173 256 310 25 50 chr1 77161323 77161636 -120033796 + L1M2 LINE L1 5168 5479 -689 2 1173 551 254 150 17 chr1 77161659 77161959 -120033473 + L1MA6 LINE L1 5617 5956 -344 2 1173 472 320 132 13 chr1 77162082 77162316 -120033116 + MER21B LTR ERV1 497 758 -105 2 1173 229 274 141 40 chr1 77164170 77164186 -120031246 - L2a LINE L2 0 3426 3318 2 1173 322 277 84 0 chr1 77164186 77164269 -120031163 - MIRm SINE MIR -17 259 170 2 1173 281 323 89 15 chr1 77164396 77164531 -120030901 - MIR SINE MIR -32 230 86 2 1173 218 119 24 0 chr1 77164654 77164696 -120030736 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1173 245 262 0 101 chr1 77165175 77165264 -120030168 - ID2 SINE ID 0 83 4 2 1173 1855 182 57 49 chr1 77165976 77166363 -120029069 - ORR1B1 LTR MaLR 0 394 5 2 1173 190 281 18 0 chr1 77166493 77166550 -120028882 - L2 LINE L2 -2505 914 857 2 1173 248 350 0 39 chr1 77166573 77166677 -120028755 - MIRm SINE MIR -96 180 81 2 1173 630 157 223 0 chr1 77166894 77167015 -120028417 + B1_Mus1 SINE Alu 1 148 0 2 1173 822 253 0 16 chr1 77167153 77167338 -120028094 + Lx5 LINE L1 6632 6813 -237 2 1173 1405 277 12 40 chr1 77167338 77167737 -120027695 + Lx6 LINE L1 7046 7433 -27 2 1173 25 0 0 0 chr1 77167737 77167762 -120027670 + AT_rich Low_complexity Low_complexity 1 25 0 2 1173 906 267 59 147 chr1 77167961 77168316 -120027116 + MTEa LTR MaLR 53 376 -3 2 1173 1251 54 0 20 chr1 77168493 77168643 -120026789 + B1_Mus2 SINE Alu 1 147 0 2 1173 1611 43 0 0 chr1 77170092 77170280 -120025152 - L1_Mus3 LINE L1 -778 5860 5673 2 1173 1875 72 0 0 chr1 77170280 77170501 -120024931 + L1_Mus1 LINE L1 6344 6564 -3 2 1173 425 314 69 95 chr1 77170511 77170817 -120024615 + ORR1E LTR MaLR 18 315 -44 2 1173 243 0 0 0 chr1 77171569 77171596 -120023836 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1173 205 373 62 16 chr1 77172154 77172282 -120023150 - MIRb SINE MIR -64 204 71 2 1173 27 0 0 0 chr1 77172505 77172532 -120022900 + AT_rich Low_complexity Low_complexity 1 27 0 2 1173 246 95 0 0 chr1 77173759 77173801 -120021631 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1173 231 211 187 28 chr1 77173896 77174003 -120021429 - L2 LINE L2 -634 2785 2662 2 1173 1223 209 107 27 chr1 77174182 77174443 -120020989 + ORR1D1 LTR MaLR 93 374 0 2 1173 263 329 13 1 chr1 77174628 77174726 -120020706 + MIRc SINE MIR 64 161 -47 2 1173 300 246 0 0 chr1 77174880 77174945 -120020487 - L1MA5 LINE L1 -4 6296 6232 2 1173 270 121 0 88 chr1 77175265 77175356 -120020076 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 2 1173 690 291 67 91 chr1 77175389 77175687 -120019745 - B4 SINE B4 0 292 2 2 1173 510 298 47 52 chr1 77176395 77176586 -120018846 - RMER30 DNA MER1_type -1 201 12 2 1173 330 253 28 17 chr1 77176588 77176706 -120018726 + MLT1H LTR MaLR 464 579 0 2 1173 2061 191 141 19 chr1 77176838 77177258 -120018174 + RLTR20B3 LTR ERVK 1 468 -109 2 1173 555 108 0 0 chr1 77177258 77177351 -120018081 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 1173 2061 229 118 25 chr1 77177351 77177435 -120017997 + RLTR20B3 LTR ERVK 469 577 -1 2 1173 239 176 39 0 chr1 77177717 77177768 -120017664 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1173 792 268 67 28 chr1 77177798 77178051 -120017381 - B4A SINE B4 -29 263 1 2 1173 207 162 0 0 chr1 77178077 77178114 -120017318 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1173 333 340 60 0 chr1 77179605 77179705 -120015727 + B4A SINE B4 184 289 -3 2 1173 331 311 18 28 chr1 77180526 77180635 -120014797 - MIR SINE MIR -139 123 16 2 1173 282 349 39 8 chr1 77180702 77180829 -120014603 + MER3 DNA MER1_type 1 131 -78 2 1173 274 290 54 40 chr1 77181439 77181560 -120013872 + L2b LINE L2 3277 3422 -4 2 1173 229 266 148 40 chr1 77181709 77181858 -120013574 - MIRb SINE MIR -36 232 68 2 1173 918 269 48 32 chr1 77182280 77182591 -120012841 + MTEb LTR MaLR 54 369 -10 2 1173 181 336 62 49 chr1 77182679 77182823 -120012609 - MIRb SINE MIR -49 219 74 2 1173 376 19 38 0 chr1 77183019 77183072 -120012360 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1173 209 244 23 18 chr1 77183518 77183592 -120011840 - MIRc SINE MIR -87 189 112 2 1173 868 258 36 10 chr1 77183599 77183795 -120011637 + B3 SINE B2 4 204 -12 2 1173 1792 270 52 64 chr1 77184348 77184957 -120010475 - RLTR18 LTR ERVK 0 616 15 2 1173 260 291 12 25 chr1 77185200 77185281 -120010151 + MER5A1 DNA MER1_type 7 86 -80 2 1173 183 162 0 0 chr1 77185506 77185543 -120009889 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1173 222 300 22 0 chr1 77185778 77185868 -120009564 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 1173 343 19 18 53 chr1 77187179 77187236 -120008196 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1173 672 147 52 0 chr1 77188729 77188845 -120006587 + B1_Mus2 SINE Alu 5 126 -21 3 1173 237 65 0 0 chr1 77189863 77189894 -120005538 + (CCA)n Simple_repeat Simple_repeat 2 32 0 3 1173 227 29 0 54 chr1 77189894 77189930 -120005502 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 3 1173 459 0 0 0 chr1 77189940 77189991 -120005441 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1173 236 250 19 19 chr1 77189995 77190048 -120005384 - ID4_ SINE ID -29 54 2 3 1173 345 335 44 33 chr1 77190074 77190256 -120005176 - MLT1E LTR MaLR -23 657 474 3 1173 720 272 13 77 chr1 77190306 77190541 -120004891 - MLT1E LTR MaLR -375 278 59 3 1173 249 325 0 0 chr1 77191373 77191456 -120003976 - L1M5 LINE L1 -2642 3504 3422 3 1173 225 94 0 0 chr1 77191690 77191722 -120003710 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 3 1173 459 0 0 0 chr1 77191733 77191784 -120003648 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1173 644 230 71 7 chr1 77191784 77191913 -120003519 - B1_Mur2 SINE Alu -10 139 1 3 1173 518 304 58 1 chr1 77192004 77192215 -120003217 + L1MC4 LINE L1 6355 6575 -1307 3 1173 1427 163 10 0 chr1 77194201 77194410 -120001022 + B3 SINE B2 1 211 -5 3 1173 23 68 0 0 chr1 77194479 77194523 -120000909 + AT_rich Low_complexity Low_complexity 1 44 0 3 1173 1115 213 29 0 chr1 77195073 77195280 -120000152 + B3 SINE B2 3 215 -1 3 1173 2043 70 34 17 chr1 77195280 77195572 -119999860 + MusHAL1 LINE L1 1544 1840 -872 3 1173 755 33 0 0 chr1 77195573 77195664 -119999768 + B2_Mm1t SINE B2 1 91 -102 3 1173 229 277 115 29 chr1 77195664 77195677 -119999755 + ID_B1 SINE B4 1 113 -111 3 1173 1727 92 19 4 chr1 77195677 77195940 -119999492 + MusHAL1 LINE L1 2443 2709 -3 3 1173 645 285 29 21 chr1 77196010 77196235 -119999197 - ORR1E LTR MaLR -142 228 4 3 1173 292 322 107 0 chr1 77196354 77196475 -119998957 + RSINE1 SINE B4 26 159 -6 3 1173 221 163 0 0 chr1 77196480 77196523 -119998909 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1173 402 358 13 19 chr1 77196593 77196747 -119998685 - MER58A DNA MER1_type -68 156 4 3 1173 215 61 30 0 chr1 77197377 77197410 -119998022 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3 1173 238 305 51 103 chr1 77197723 77197749 -119997683 + ID SINE ID 66 85 -139 3 1173 269 297 67 0 chr1 77197749 77197862 -119997570 + PB1D9 SINE Alu 2 125 -2 3 1173 262 262 61 92 chr1 77198836 77199111 -119996321 + MTEa LTR MaLR 97 379 0 3 1173 255 268 28 14 chr1 77200033 77200105 -119995327 + (CATG)n Simple_repeat Simple_repeat 2 74 0 3 1173 1544 243 10 62 chr1 77200960 77201090 -119994342 - MTEb LTR MaLR 0 379 253 3 146 2107 154 50 19 chr1 77201090 77201453 -119993979 - ORR1D1 LTR MaLR 0 374 1 3 1174 1544 243 10 62 chr1 77201453 77201722 -119993710 - MTEb LTR MaLR -127 252 1 3 1174 394 200 0 36 chr1 77201797 77201880 -119993552 + B1F1 SINE Alu 70 149 0 3 1174 705 24 0 0 chr1 77202167 77202250 -119993182 + (TCCCC)n Simple_repeat Simple_repeat 3 85 0 3 1174 835 242 22 13 chr1 77202429 77202638 -119992794 - B3A SINE B2 -2 214 1 3 1174 364 248 227 17 chr1 77202918 77203037 -119992395 + B1F1 SINE Alu 5 148 -1 3 1174 332 298 55 55 chr1 77203201 77203329 -119992103 - MIR3 SINE MIR -41 167 40 3 1174 823 249 45 52 chr1 77203389 77203656 -119991776 - MARNA DNA Mariner -164 422 158 3 1174 618 279 64 0 chr1 77204318 77204458 -119990974 + RSINE1 SINE B4 13 161 -4 3 1174 431 113 0 14 chr1 77205153 77205225 -119990207 + (TCC)n Simple_repeat Simple_repeat 2 72 0 3 1174 333 0 0 0 chr1 77205677 77205714 -119989718 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1174 658 241 72 41 chr1 77206151 77206346 -119989086 + RMER30 DNA MER1_type 2 202 0 3 1174 323 334 119 107 chr1 77206718 77207221 -119988211 - LTR33A LTR ERVL 0 520 12 3 1174 401 327 127 21 chr1 77207363 77207705 -119987727 + L1M5 LINE L1 3928 4305 -1841 3 1174 245 389 74 30 chr1 77208348 77208483 -119986949 - MIR SINE MIR -100 162 22 3 1174 199 260 20 0 chr1 77208603 77208653 -119986779 + L2a LINE L2 3359 3409 -17 3 1174 672 251 86 103 chr1 77208786 77209088 -119986344 - MTD LTR MaLR -122 297 1 3 1174 385 350 0 40 chr1 77209106 77209255 -119986177 - ID_B1 SINE B4 -1 223 81 3 1174 631 328 57 27 chr1 77209353 77209723 -119985709 + L1M5 LINE L1 5259 5639 -601 3 1174 311 339 86 38 chr1 77210456 77210723 -119984709 + L1MEf LINE L1 834 1113 -5087 3 1174 471 324 88 27 chr1 77210752 77211126 -119984306 + L1ME1 LINE L1 5595 5991 -188 3 1174 387 0 0 0 chr1 77212573 77212616 -119982816 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1174 317 212 50 57 chr1 77212840 77212980 -119982452 + MER20B DNA MER1_type 617 755 -28 3 1174 450 0 0 0 chr1 77213212 77213262 -119982170 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1174 23 0 0 0 chr1 77213888 77213911 -119981521 + AT_rich Low_complexity Low_complexity 1 23 0 3 1174 734 120 184 0 chr1 77214606 77214731 -119980701 + B1_Mus1 SINE Alu 1 148 0 3 1174 809 313 66 33 chr1 77214773 77215241 -119980191 + L1MA5 LINE L1 5542 6026 -138 3 1174 416 219 43 0 chr1 77215298 77215462 -119979970 + (TA)n Simple_repeat Simple_repeat 1 171 0 3 1174 451 256 11 9 chr1 77215504 77215613 -119979819 + B1_Mur1 SINE Alu 5 143 -6 3 1174 266 225 12 0 chr1 77215615 77215695 -119979737 + GA-rich Low_complexity Low_complexity 4 84 0 3 1174 245 209 0 23 chr1 77215759 77215803 -119979629 - PB1D7 SINE Alu -30 90 48 3 1174 561 64 0 0 chr1 77216009 77216087 -119979345 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1174 393 303 113 43 chr1 77216912 77217098 -119978334 + MER63A DNA AcHobo 12 210 0 3 1174 1200 68 0 7 chr1 77217843 77217991 -119977441 + B1_Mus2 SINE Alu 1 147 0 3 1174 228 278 0 18 chr1 77217993 77218048 -119977384 + polypurine Low_complexity Low_complexity 4 57 0 3 1174 650 180 0 43 chr1 77218057 77218243 -119977189 + GA-rich Low_complexity Low_complexity 3 180 0 3 1174 241 145 16 16 chr1 77218286 77218349 -119977083 + GA-rich Low_complexity Low_complexity 2 64 0 3 1174 587 218 149 48 chr1 77218405 77218593 -119976839 + B4A SINE B4 1 207 -85 3 1174 1132 212 35 0 chr1 77218840 77219043 -119976389 + B3 SINE B2 2 211 -5 3 1174 556 275 47 7 chr1 77219727 77219877 -119975555 - B4A SINE B4 -136 156 1 3 1174 542 281 28 51 chr1 77220022 77220199 -119975233 + B3A SINE B2 45 216 0 3 1174 293 294 88 18 chr1 77221279 77221443 -119973989 + MIRc SINE MIR 22 191 -71 3 1174 788 266 49 0 chr1 77221516 77221719 -119973713 + ID_B1 SINE B4 1 213 -11 3 1174 495 227 6 18 chr1 77221820 77221986 -119973446 + CT-rich Low_complexity Low_complexity 3 166 0 3 1174 357 24 0 0 chr1 77221987 77222029 -119973403 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1174 947 217 64 0 chr1 77222438 77222602 -119972830 + B3 SINE B2 1 167 -49 3 1174 186 43 0 0 chr1 77222602 77222625 -119972807 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1174 947 217 64 0 chr1 77222625 77222663 -119972769 + B3 SINE B2 168 215 -1 3 1174 387 0 0 0 chr1 77222905 77222948 -119972484 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1174 1271 174 18 0 chr1 77224905 77225123 -119970309 - URR1A DNA MER1_type 0 226 5 3 1174 443 259 20 163 chr1 77225290 77225493 -119969939 + B4A SINE B4 52 225 -67 3 1174 498 316 52 15 chr1 77225510 77225645 -119969787 + RSINE1 SINE B4 12 151 -14 3 1174 303 284 44 22 chr1 77225705 77225795 -119969637 + B4A SINE B4 201 292 0 3 1174 3208 177 166 61 chr1 77225900 77226783 -119968649 + RMER19B LTR ERVK 2 890 -12 3 1174 770 263 0 75 chr1 77228038 77228252 -119967180 + B3A SINE B2 1 198 0 3 1174 343 296 16 57 chr1 77230321 77230443 -119964989 - B3A SINE B2 0 198 82 3 1174 491 298 70 96 chr1 77230441 77230509 -119964923 - B4A SINE B4 -67 225 176 3 1174 1173 83 0 0 chr1 77230509 77230689 -119964743 + (GTTTG)n Simple_repeat Simple_repeat 1 180 0 3 1174 491 298 70 96 chr1 77230689 77230850 -119964582 - B4A SINE B4 -117 175 2 3 1174 276 278 28 0 chr1 77231069 77231141 -119964291 + PB1D10 SINE Alu 33 106 -11 3 1174 981 88 0 0 chr1 77231141 77231278 -119964154 + (GAAAA)n Simple_repeat Simple_repeat 2 138 0 3 1174 797 205 91 62 chr1 77231282 77231490 -119963942 + B3 SINE B2 2 215 -1 3 1174 195 129 0 0 chr1 77231525 77231556 -119963876 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 3 1174 204 350 0 0 chr1 77232932 77232992 -119962440 + L3 LINE CR1 4076 4135 -354 3 1174 358 275 223 51 chr1 77233241 77233485 -119961947 + B4 SINE B4 7 292 0 3 1174 901 316 53 15 chr1 77233947 77234287 -119961145 - MLT1A0 LTR MaLR 0 365 13 3 1174 230 314 77 66 chr1 77234376 77234635 -119960797 + Charlie23a DNA MER1_type 67 328 -11 3 1174 1793 234 30 20 chr1 77234774 77235138 -119960294 + MTD LTR MaLR 5 374 -45 3 1174 207 0 0 0 chr1 77235138 77235161 -119960271 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 3 1174 1793 234 30 20 chr1 77235161 77235193 -119960239 + MTD LTR MaLR 375 405 -14 3 1174 297 0 0 0 chr1 77235579 77235612 -119959820 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1174 435 83 0 0 chr1 77236092 77236152 -119959280 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1174 1271 252 119 35 chr1 77236189 77236641 -119958791 + Lx9 LINE L1 6995 7484 -160 3 1174 910 115 0 13 chr1 77236861 77237019 -119958413 + (TATG)n Simple_repeat Simple_repeat 3 158 0 3 1174 588 307 48 12 chr1 77237026 77237191 -119958241 - B3A SINE B2 -27 171 1 3 1174 496 167 13 0 chr1 77238423 77238501 -119956931 + ID4_ SINE ID 2 80 -3 3 1174 431 319 15 7 chr1 77239126 77239262 -119956170 + B1F1 SINE Alu 12 148 -1 3 1174 202 73 0 47 chr1 77239274 77239317 -119956115 + (TTATA)n Simple_repeat Simple_repeat 5 45 0 3 1174 22 35 0 0 chr1 77239548 77239577 -119955855 + AT_rich Low_complexity Low_complexity 1 29 0 4 1174 480 294 68 71 chr1 77239624 77239928 -119955504 + B4 SINE B4 2 274 -18 4 1174 204 40 0 0 chr1 77239929 77239954 -119955478 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1174 629 239 0 0 chr1 77240573 77240690 -119954742 + B3 SINE B2 1 117 -99 4 1174 25 0 0 0 chr1 77240704 77240729 -119954703 + AT_rich Low_complexity Low_complexity 1 25 0 4 1174 43 76 0 0 chr1 77240846 77240938 -119954494 + AT_rich Low_complexity Low_complexity 1 92 0 4 1174 360 258 86 0 chr1 77241024 77241117 -119954315 - MER33 DNA MER1_type -212 112 12 4 1174 250 276 30 121 chr1 77241229 77241361 -119954071 + MER102c DNA MER1_type 83 202 -129 4 1174 221 301 126 21 chr1 77241421 77241516 -119953916 - MIR SINE MIR -64 144 40 4 1174 369 242 0 0 chr1 77242162 77242290 -119953142 + CT-rich Low_complexity Low_complexity 2 129 0 4 1174 513 47 0 0 chr1 77243756 77243820 -119951612 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 4 1174 408 257 113 64 chr1 77244537 77244803 -119950629 - Ricksha_c DNA MuDR -1142 906 628 4 1174 387 314 43 7 chr1 77244983 77245124 -119950308 - Ricksha_c DNA MuDR -1548 500 355 4 1174 1137 257 43 43 chr1 77245356 77245685 -119949747 - MLT1B LTR MaLR 0 390 62 4 1174 902 267 19 0 chr1 77245856 77246062 -119949370 - B3 SINE B2 -6 210 1 4 1174 388 323 80 117 chr1 77246140 77246513 -119948919 - MLT1F2 LTR MaLR -16 664 235 4 1174 23 54 0 0 chr1 77247327 77247364 -119948068 + AT_rich Low_complexity Low_complexity 1 37 0 4 1174 290 297 10 19 chr1 77247513 77247616 -119947816 + A-rich Low_complexity Low_complexity 4 105 0 4 1174 349 323 15 23 chr1 77247989 77248122 -119947310 + MER5A DNA MER1_type 58 189 0 4 1174 695 199 95 7 chr1 77248367 77248504 -119946928 + B1_Mur3 SINE Alu 1 149 0 4 1174 382 18 36 0 chr1 77248757 77248812 -119946620 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1174 1073 279 20 54 chr1 77248838 77249134 -119946298 - B4 SINE B4 -4 288 3 4 1174 294 315 59 89 chr1 77249553 77249755 -119945677 + AmnSINE1 SINE SINE 215 410 -165 4 1174 305 285 57 35 chr1 77250149 77250291 -119945141 + MLT1H2 LTR MaLR 286 452 -103 4 1174 360 0 0 0 chr1 77250522 77250562 -119944870 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1174 291 54 0 0 chr1 77250740 77250777 -119944655 + (GAA)n Simple_repeat Simple_repeat 3 39 0 4 1174 226 187 0 0 chr1 77251784 77251831 -119943601 - L1Md_F3 LINE L1 -556 6026 5980 4 1174 180 0 0 0 chr1 77253378 77253398 -119942034 + (CCA)n Simple_repeat Simple_repeat 2 21 0 4 1174 644 114 13 6 chr1 77253565 77253676 -119941756 + B1_Mm SINE Alu 40 149 0 4 1174 279 0 0 0 chr1 77253678 77253709 -119941723 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1174 306 0 0 0 chr1 77255749 77255783 -119939649 + (CAG)n Simple_repeat Simple_repeat 1 34 0 4 1174 264 59 0 0 chr1 77256000 77256034 -119939398 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1174 395 250 39 24 chr1 77256705 77256832 -119938600 + MamRep1161 DNA TcMar 38 166 -791 4 1174 206 371 55 35 chr1 77257005 77257259 -119938173 + L2c LINE L2 3109 3367 -20 4 1174 26 30 0 0 chr1 77257268 77257301 -119938131 + AT_rich Low_complexity Low_complexity 1 33 0 4 1174 462 18 0 0 chr1 77258208 77258263 -119937169 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1174 222 275 116 0 chr1 77259357 77259426 -119936006 + MER5B DNA MER1_type 90 166 -12 4 1174 422 79 16 0 chr1 77259888 77259951 -119935481 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1174 604 264 77 18 chr1 77259955 77260175 -119935257 - B4A SINE B4 -16 276 44 4 1174 210 258 0 0 chr1 77260434 77260523 -119934909 + (TGG)n Simple_repeat Simple_repeat 1 89 0 4 1174 198 91 0 0 chr1 77261585 77261618 -119933814 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1174 306 0 0 0 chr1 77261879 77261913 -119933519 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1174 189 0 0 0 chr1 77263480 77263501 -119931931 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 4 1174 246 273 39 13 chr1 77264001 77264079 -119931353 + MLT1M LTR MaLR 131 210 -462 4 1174 311 376 17 11 chr1 77264388 77264563 -119930869 + MER45A DNA Tip100 3 178 0 4 1174 201 196 39 19 chr1 77265070 77265122 -119930310 + MIRb SINE MIR 200 252 -16 4 1174 342 152 0 0 chr1 77266118 77266177 -119929255 + GA-rich Low_complexity Low_complexity 5 63 0 4 1174 364 279 115 0 chr1 77266259 77266363 -119929069 + ORR1E LTR MaLR 3 118 -241 4 1174 1302 224 111 24 chr1 77266696 77267066 -119928366 + MTD LTR MaLR 18 419 0 4 1174 236 304 116 22 chr1 77269791 77269929 -119925503 - L4 LINE RTE -1164 865 715 4 1174 999 287 46 29 chr1 77270499 77270779 -119924653 + B4A SINE B4 4 288 -4 4 1174 348 320 19 50 chr1 77272186 77272347 -119923085 - MIRb SINE MIR 0 268 113 4 1174 240 298 97 36 chr1 77272899 77273146 -119922286 - MER33 DNA MER1_type -22 302 41 4 1174 201 74 0 0 chr1 77273349 77273376 -119922056 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 4 1174 497 292 123 7 chr1 77273422 77273560 -119921872 - RSINE1 SINE B4 -9 156 3 4 1174 583 229 77 86 chr1 77273561 77273581 -119921851 - B4 SINE B4 -64 228 217 4 1174 261 0 0 0 chr1 77273581 77273610 -119921822 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1174 583 229 77 86 chr1 77273610 77273809 -119921623 - B4 SINE B4 -76 216 11 4 1174 477 170 0 0 chr1 77273962 77274074 -119921358 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 1174 242 132 0 19 chr1 77274073 77274127 -119921305 + GA-rich Low_complexity Low_complexity 1 53 0 4 1174 440 241 104 75 chr1 77274593 77274795 -119920637 - B3A SINE B2 -3 192 1 4 1174 183 156 0 0 chr1 77276797 77276829 -119918603 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1174 357 326 82 14 chr1 77276909 77277055 -119918377 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1174 675 265 70 15 chr1 77278762 77278961 -119916471 - MER58C DNA MER1_type -5 210 1 4 1174 425 288 98 46 chr1 77279157 77279310 -119916122 + MER5B DNA MER1_type 18 178 0 4 1174 189 176 29 0 chr1 77279437 77279471 -119915961 - MER5A DNA MER1_type -154 35 1 4 1174 256 135 0 0 chr1 77280092 77280129 -119915303 + MER5A1 DNA MER1_type 1 37 -129 4 1174 509 181 130 62 chr1 77280173 77280350 -119915082 - ORSL DNA Tip100 -8 267 79 4 1174 545 326 14 0 chr1 77280355 77280493 -119914939 + ID_B1 SINE B4 85 224 0 4 1174 206 133 0 0 chr1 77280493 77280523 -119914909 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1174 297 0 0 0 chr1 77281150 77281183 -119914249 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1174 282 280 67 0 chr1 77281391 77281466 -119913966 + ID4_ SINE ID 2 81 -2 4 1174 1483 183 105 29 chr1 77281605 77281948 -119913484 + ORR1D1 LTR MaLR 6 374 0 4 1174 328 304 62 17 chr1 77281949 77282126 -119913306 + L1MC LINE L1 5117 5301 -845 4 1174 250 330 76 11 chr1 77282138 77282322 -119913110 + L1MC LINE L1 5357 5552 -792 4 1174 577 289 46 20 chr1 77282363 77282515 -119912917 - ID_B1 SINE B4 -4 220 65 4 1174 256 279 98 9 chr1 77282692 77282804 -119912628 + L1MC LINE L1 5718 5839 -505 4 1174 276 280 120 0 chr1 77282844 77282944 -119912488 - ID_B1 SINE B4 -28 196 85 4 1174 967 236 83 50 chr1 77283784 77284061 -119911371 + B4A SINE B4 1 286 -6 4 1174 562 301 0 7 chr1 77284772 77284909 -119910523 + RSINE1 SINE B4 1 136 -29 4 1174 207 100 0 0 chr1 77284916 77284946 -119910486 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1174 471 295 65 33 chr1 77285526 77285740 -119909692 - Lx9 LINE L1 -214 7430 7210 4 1174 985 145 7 0 chr1 77287572 77287717 -119907715 + B1_Mur4 SINE Alu 5 150 0 4 1174 810 235 75 5 chr1 77288128 77288329 -119907103 + B3 SINE B2 2 216 0 4 1174 225 0 0 0 chr1 77288547 77288572 -119906860 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1174 958 266 35 0 chr1 77288887 77289090 -119906342 - B3 SINE B2 -6 210 1 4 1174 301 279 187 30 chr1 77289913 77290079 -119905353 - MIRb SINE MIR -72 196 5 4 1174 573 287 110 50 chr1 77292863 77293330 -119902102 - Lx8 LINE L1 -6 7467 6964 4 1174 579 336 126 85 chr1 77293609 77294055 -119901377 - MLT1F2 LTR MaLR -3 557 94 4 1174 457 336 130 11 chr1 77294147 77294412 -119901020 - B4 SINE B4 -24 268 1 4 1174 357 314 109 74 chr1 77294491 77294721 -119900711 + L2b LINE L2 3150 3387 0 4 1174 309 304 65 0 chr1 77296044 77296136 -119899296 + MIRc SINE MIR 88 185 -83 4 1174 2030 35 0 0 chr1 77296624 77296851 -119898581 - L1Md_T LINE L1 0 6582 6356 4 1174 182 37 37 0 chr1 77297017 77297044 -119898388 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1174 225 365 56 0 chr1 77297552 77297659 -119897773 - L4 LINE RTE -521 1508 1396 4 1174 864 186 14 7 chr1 77297855 77297996 -119897436 + B1_Mur2 SINE Alu 1 142 -7 4 1174 779 270 53 14 chr1 77298103 77298310 -119897122 - ID_B1 SINE B4 -9 215 1 4 1174 1536 168 60 24 chr1 77298512 77298848 -119896584 + RLTR15 LTR ERVK 1 348 -11 4 1174 1205 170 92 5 chr1 77299246 77299453 -119895979 - URR1B DNA MER1_type 0 225 1 4 1174 707 325 33 8 chr1 77299500 77299742 -119895690 + B4A SINE B4 1 248 -44 4 1174 728 313 29 51 chr1 77299738 77300011 -119895421 + B4 SINE B4 24 290 -2 4 1174 415 192 40 6 chr1 77300025 77300198 -119895234 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1174 515 183 28 11 chr1 77300259 77300436 -119894996 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1174 267 31 0 0 chr1 77301161 77301193 -119894239 + (TATG)n Simple_repeat Simple_repeat 2 33 0 4 1174 192 231 0 0 chr1 77301369 77301421 -119894011 + CT-rich Low_complexity Low_complexity 2 53 0 4 1174 549 0 0 0 chr1 77302600 77302661 -119892771 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1174 234 0 0 0 chr1 77302737 77302763 -119892669 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1174 457 96 53 0 chr1 77302994 77303088 -119892344 + (GA)n Simple_repeat Simple_repeat 1 99 0 5 1174 1067 284 82 27 chr1 77307687 77308016 -119887416 + ORR1E LTR MaLR 1 347 -12 5 1174 218 289 74 88 chr1 77309001 77309149 -119886283 - B1_Mus2 SINE Alu -1 146 1 5 1174 794 302 0 0 chr1 77309149 77309229 -119886203 - B4A SINE B4 -208 84 5 5 1174 329 294 149 59 chr1 77309599 77309888 -119885544 + L2 LINE L2 2552 2866 -553 5 1174 761 282 82 0 chr1 77310076 77310282 -119885150 + B4A SINE B4 1 223 -69 5 1174 346 266 0 12 chr1 77310296 77310376 -119885056 + B2_Mm2 SINE B2 1 79 -116 5 1174 295 309 44 96 chr1 77310354 77310490 -119884942 + B3A SINE B2 86 214 -2 5 1174 1349 102 11 0 chr1 77310490 77310666 -119884766 + B2_Mm1t SINE B2 3 180 -13 5 1174 236 33 0 0 chr1 77310720 77310750 -119884682 + B2_Mm2 SINE B2 64 93 -102 5 1174 243 131 66 0 chr1 77310739 77310800 -119884632 + B2_Mm1t SINE B2 129 193 0 5 1174 231 279 111 36 chr1 77311590 77311744 -119883688 + MIRb SINE MIR 3 165 -103 5 1174 207 69 0 0 chr1 77312554 77312583 -119882849 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1174 426 20 0 0 chr1 77313315 77313366 -119882066 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1174 474 250 87 0 chr1 77313465 77313569 -119881863 + PB1D9 SINE Alu 1 113 -7 5 1174 2111 146 96 6 chr1 77314219 77314563 -119880869 + ORR1C1 LTR MaLR 4 378 0 5 1174 207 254 0 0 chr1 77314704 77314767 -119880665 + (CATA)n Simple_repeat Simple_repeat 2 64 0 5 1174 600 318 50 13 chr1 77314948 77315187 -119880245 + MER2 DNA MER2_type 97 344 -1 5 1174 454 304 50 36 chr1 77315525 77315747 -119879685 - RMER15 LTR ERVL -4 571 347 5 1174 1163 186 72 58 chr1 77316323 77316546 -119878886 + URR1A DNA MER1_type 1 226 0 5 1174 333 0 0 0 chr1 77316989 77317026 -119878406 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1174 282 116 0 0 chr1 77317026 77317068 -119878364 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1174 207 258 319 22 chr1 77319088 77319179 -119876253 + MIRc SINE MIR 32 149 -119 5 1174 322 355 129 35 chr1 77319753 77320039 -119875393 - L2 LINE L2 -549 2870 2558 5 1174 189 0 0 0 chr1 77320627 77320648 -119874784 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1174 564 300 36 86 chr1 77320658 77320961 -119874471 - B4 SINE B4 -2 290 3 5 1174 225 235 101 14 chr1 77321337 77321406 -119874026 - L2a LINE L2 -17 3409 3335 5 1174 22 0 0 0 chr1 77322515 77322537 -119872895 + AT_rich Low_complexity Low_complexity 1 22 0 5 1174 1243 307 27 8 chr1 77323256 77323624 -119871808 + MTE2b LTR MaLR 1 375 -4 5 1174 216 0 0 0 chr1 77324804 77324828 -119870604 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5 1174 558 173 45 18 chr1 77324847 77324959 -119870473 + PB1D9 SINE Alu 6 120 0 5 1174 285 225 14 14 chr1 77326560 77326632 -119868800 - MER58A DNA MER1_type -114 110 39 5 1174 508 260 91 8 chr1 77326904 77327036 -119868396 + B1F SINE Alu 1 143 -6 5 1174 555 295 39 0 chr1 77327071 77327200 -119868232 + RSINE1 SINE B4 3 136 -29 5 1174 504 0 0 0 chr1 77327202 77327258 -119868174 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 5 1174 227 329 0 14 chr1 77328187 77328258 -119867174 - MurSatRep1 Unknown Unknown -1920 217 148 5 1174 949 240 70 0 chr1 77328359 77328559 -119866873 + B3 SINE B2 1 214 -2 5 1174 1076 37 0 7 chr1 77328840 77328975 -119866457 + MTB LTR MaLR 259 392 -8 5 1174 992 197 165 0 chr1 77328979 77329197 -119866235 + MTD LTR MaLR 166 419 0 5 1174 687 75 0 0 chr1 77329270 77329364 -119866068 + (GGGA)n Simple_repeat Simple_repeat 2 95 0 5 1174 899 254 102 0 chr1 77329647 77329844 -119865588 - ID_B1 SINE B4 0 224 8 5 1174 7969 104 55 3 chr1 77330436 77331543 -119863889 + Lx2 LINE L1 5833 6997 0 5 1174 195 235 0 0 chr1 77331608 77331659 -119863773 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1174 270 194 0 0 chr1 77331704 77331771 -119863661 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1174 306 259 0 0 chr1 77331812 77331928 -119863504 + (TG)n Simple_repeat Simple_repeat 1 116 0 5 1174 216 0 0 0 chr1 77331994 77332018 -119863414 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1174 547 244 273 55 chr1 77332018 77332256 -119863176 - B4 SINE B4 0 292 3 5 1175 180 77 0 0 chr1 77335301 77335327 -119860105 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1175 261 135 0 0 chr1 77335671 77335723 -119859709 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 5 1175 764 274 15 10 chr1 77335755 77335961 -119859471 - ID_B1 SINE B4 -17 207 1 5 1175 22 56 0 0 chr1 77337362 77337398 -119858034 + AT_rich Low_complexity Low_complexity 1 36 0 5 1175 216 0 0 0 chr1 77337563 77337587 -119857845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1175 605 242 0 30 chr1 77338203 77338335 -119857097 - ID_B1 SINE B4 -13 211 84 5 1175 325 304 16 0 chr1 77338335 77338460 -119856972 - MER45R DNA Tip100 -725 856 730 5 1175 184 0 30 61 chr1 77338492 77338525 -119856907 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1175 224 225 127 0 chr1 77338529 77338600 -119856832 - PB1D10 SINE Alu -9 108 29 5 1175 248 312 67 67 chr1 77338733 77338867 -119856565 - MLT1A0 LTR MaLR -116 249 116 5 1175 237 305 119 0 chr1 77339850 77339968 -119855464 - MIRb SINE MIR -23 245 114 5 1175 443 329 7 0 chr1 77339975 77340115 -119855317 + RSINE1 SINE B4 3 143 -22 5 1175 423 0 0 0 chr1 77340122 77340169 -119855263 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1175 576 209 88 55 chr1 77340830 77341012 -119854420 - URR1B DNA MER1_type -35 190 3 5 1175 569 154 9 0 chr1 77341223 77341333 -119854099 + G-rich Low_complexity Low_complexity 5 115 0 5 1175 847 223 32 5 chr1 77341340 77341529 -119853903 + B3 SINE B2 4 197 -19 5 1175 21 36 0 0 chr1 77341531 77341559 -119853873 + AT_rich Low_complexity Low_complexity 1 28 0 5 1175 303 28 0 0 chr1 77341737 77341773 -119853659 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1175 611 308 95 59 chr1 77342381 77342906 -119852526 + MER97c DNA MER1_type? 199 742 -348 5 1175 733 247 117 11 chr1 77343115 77343381 -119852051 + MLT2B2 LTR ERVL 2 295 -220 5 1175 393 22 0 0 chr1 77343560 77343606 -119851826 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1175 684 35 0 0 chr1 77343955 77344042 -119851390 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1175 1328 168 0 22 chr1 77346086 77346317 -119849115 - URR1A DNA MER1_type 0 226 1 5 1175 838 202 63 16 chr1 77348045 77348236 -119847196 - ORR1D1 LTR MaLR -4 380 181 5 1175 414 0 0 0 chr1 77348256 77348302 -119847130 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1175 327 104 0 0 chr1 77348299 77348347 -119847085 + (GAA)n Simple_repeat Simple_repeat 3 50 0 5 1175 900 174 11 26 chr1 77348349 77348369 -119847063 - ORR1D1 LTR MaLR -188 186 166 5 1175 1321 45 6 6 chr1 77348369 77348547 -119846885 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 5 1175 900 174 11 26 chr1 77348547 77348715 -119846717 - ORR1D1 LTR MaLR -209 165 1 5 1175 243 0 0 0 chr1 77348912 77348939 -119846493 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1175 1083 98 0 0 chr1 77349213 77349376 -119846056 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 1175 517 264 32 0 chr1 77349376 77349501 -119845931 - RSINE1 SINE B4 -25 140 12 5 1175 36 23 0 0 chr1 77349539 77349582 -119845850 + AT_rich Low_complexity Low_complexity 1 43 0 5 1175 523 296 35 0 chr1 77349649 77349787 -119845645 - Lx9 LINE L1 -186 7458 7315 5 1175 258 106 0 0 chr1 77349787 77349834 -119845598 + (ATTG)n Simple_repeat Simple_repeat 1 47 0 5 1175 523 296 35 0 chr1 77349834 77349864 -119845568 - Lx9 LINE L1 -330 7314 7285 5 1175 298 221 19 0 chr1 77350127 77350267 -119845165 + CT-rich Low_complexity Low_complexity 1 142 0 5 1175 486 288 18 61 chr1 77350660 77350823 -119844609 + B4A SINE B4 1 156 -136 5 1175 472 42 28 0 chr1 77350919 77350990 -119844442 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1175 875 98 0 8 chr1 77350990 77351122 -119844310 + (GGAA)n Simple_repeat Simple_repeat 4 135 0 5 1175 214 228 105 0 chr1 77351741 77351798 -119843634 + RSINE1 SINE B4 92 154 -11 5 1175 248 282 0 113 chr1 77352049 77352071 -119843361 + MT2B LTR ERVL 148 155 -446 5 1175 693 197 35 0 chr1 77352071 77352213 -119843219 + B1_Mur2 SINE Alu 2 148 -1 5 1175 1441 247 99 10 chr1 77352389 77352774 -119842658 + MTD LTR MaLR 1 419 0 5 1175 338 258 34 0 chr1 77353145 77353234 -119842198 + RSINE1 SINE B4 70 161 -4 5 1175 818 184 0 6 chr1 77353958 77354128 -119841304 + (CATA)n Simple_repeat Simple_repeat 2 170 0 5 1175 926 56 0 8 chr1 77354412 77354538 -119840894 + (TCCC)n Simple_repeat Simple_repeat 3 127 0 5 1175 1191 112 0 0 chr1 77355305 77355484 -119839948 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 1175 315 161 0 0 chr1 77355485 77355541 -119839891 + GA-rich Low_complexity Low_complexity 1 56 0 5 1175 670 154 329 12 chr1 77355711 77355875 -119839557 + B3 SINE B2 1 216 0 5 1175 457 115 51 0 chr1 77356400 77356478 -119838954 - RMER16 LTR ERVK 0 533 452 5 1175 939 210 5 0 chr1 77356483 77356683 -119838749 - MTD LTR MaLR -218 201 1 5 1175 459 263 62 93 chr1 77357215 77357240 -119838192 - B2_Mm1t SINE B2 -5 188 165 5 1175 432 0 0 0 chr1 77357240 77357288 -119838144 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1175 920 206 9 5 chr1 77357288 77357455 -119837977 - B3A SINE B2 -29 164 2 5 1175 720 143 21 0 chr1 77357498 77357638 -119837794 + GA-rich Low_complexity Low_complexity 1 143 0 5 1175 1466 54 16 16 chr1 77358876 77359064 -119836368 - B2_Mm2 SINE B2 -6 189 2 6 1175 252 231 15 35 chr1 77359683 77359774 -119835658 - MIRc SINE MIR -52 156 70 6 1175 554 193 12 12 chr1 77360135 77360298 -119835134 + GA-rich Low_complexity Low_complexity 2 164 0 6 1175 1257 140 45 27 chr1 77360509 77360729 -119834703 - URR1B DNA MER1_type 0 225 2 6 1175 3191 34 39 3 chr1 77362026 77362408 -119833024 - MTA_Mm LTR MaLR 0 396 1 6 1175 810 293 97 9 chr1 77362488 77362808 -119832624 + Lx6 LINE L1 7025 7372 -88 6 1175 260 261 189 31 chr1 77363245 77363359 -119832073 + B1F1 SINE Alu 1 117 0 6 1175 34 24 0 0 chr1 77363367 77363408 -119832024 + AT_rich Low_complexity Low_complexity 1 41 0 6 1175 258 355 22 7 chr1 77363535 77363671 -119831761 + B1F2 SINE Alu 12 149 0 6 1175 545 52 13 0 chr1 77365606 77365683 -119829749 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1175 644 171 8 17 chr1 77366478 77366597 -119828835 - PB1D9 SINE Alu -2 118 1 6 1175 710 231 13 20 chr1 77366626 77366776 -119828656 + B1_Mur1 SINE Alu 1 149 0 6 1175 209 59 59 0 chr1 77366782 77366816 -119828616 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 6 1175 602 185 74 25 chr1 77368189 77368311 -119827121 + RSINE1 SINE B4 3 130 -35 6 1175 189 0 0 0 chr1 77368313 77368334 -119827098 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1175 342 0 0 0 chr1 77368410 77368448 -119826984 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1175 318 50 0 0 chr1 77368685 77368725 -119826707 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1175 468 72 0 0 chr1 77369379 77369448 -119825984 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1175 1511 206 140 83 chr1 77370636 77371166 -119824266 + RLTR20B3 LTR ERVK 1 560 -17 6 1175 531 0 0 0 chr1 77371190 77371249 -119824183 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1175 357 82 0 0 chr1 77371589 77371638 -119823794 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1175 500 111 0 12 chr1 77373261 77373343 -119822089 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 6 1175 255 103 0 0 chr1 77373782 77373821 -119821611 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1175 253 259 68 34 chr1 77374924 77375012 -119820420 - PB1D7 SINE Alu -6 114 24 6 1175 25 75 0 0 chr1 77380888 77380941 -119814491 + AT_rich Low_complexity Low_complexity 1 53 0 6 1175 198 0 0 0 chr1 77381489 77381511 -119813921 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1175 369 0 0 0 chr1 77381511 77381551 -119813881 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1175 584 282 0 26 chr1 77383226 77383379 -119812053 - RSINE1 SINE B4 -15 150 2 6 1175 199 297 95 41 chr1 77384606 77384827 -119810605 - MIR SINE MIR -10 252 20 6 1175 180 97 0 0 chr1 77386571 77386602 -119808830 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1175 187 184 0 11 chr1 77386767 77386812 -119808620 - MIRm SINE MIR -127 149 101 6 1175 523 147 20 0 chr1 77386898 77387000 -119808432 + CT-rich Low_complexity Low_complexity 3 106 0 6 1175 278 292 187 30 chr1 77387015 77387149 -119808283 - RSINE1 SINE B4 -10 155 1 6 1175 312 171 86 0 chr1 77387282 77387352 -119808080 + BC1_Mm scRNA scRNA 1 76 -76 6 1175 22 0 0 0 chr1 77387543 77387565 -119807867 + AT_rich Low_complexity Low_complexity 1 22 0 6 1175 242 284 27 0 chr1 77387726 77387800 -119807632 - ID4_ SINE ID -6 77 2 6 1175 192 287 0 107 chr1 77388478 77388599 -119806833 - MIRc SINE MIR -31 237 130 6 1175 497 246 172 86 chr1 77388798 77388823 -119806609 - B4 SINE B4 0 292 272 6 1175 479 45 15 0 chr1 77388823 77388889 -119806543 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1175 497 246 172 86 chr1 77388889 77389130 -119806302 - B4 SINE B4 -21 271 3 6 1175 736 234 6 31 chr1 77391377 77391540 -119803892 + RSINE1 SINE B4 3 161 -4 6 1175 447 19 0 0 chr1 77391726 77391778 -119803654 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1175 393 284 0 10 chr1 77391964 77392060 -119803372 + RSINE1 SINE B4 2 96 -69 6 1175 212 86 0 28 chr1 77392060 77392096 -119803336 + (AGGGGG)n Simple_repeat Simple_repeat 5 39 0 6 1175 276 216 0 0 chr1 77392100 77392151 -119803281 + RSINE1 SINE B4 86 136 -29 6 1175 207 0 0 0 chr1 77392353 77392376 -119803056 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1175 444 193 0 26 chr1 77392376 77392493 -119802939 + G-rich Low_complexity Low_complexity 4 117 0 6 1175 252 228 165 0 chr1 77392822 77392901 -119802531 - PB1D10 SINE Alu -25 92 1 6 1175 504 0 0 0 chr1 77393719 77393775 -119801657 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1175 186 43 0 0 chr1 77396541 77396564 -119798868 + (G)n Simple_repeat Simple_repeat 1 23 0 6 1175 207 0 0 0 chr1 77396681 77396704 -119798728 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1175 278 234 19 113 chr1 77397108 77397214 -119798218 + MT2B LTR ERVL 169 264 -337 6 1175 799 128 0 0 chr1 77397124 77397249 -119798183 + B1_Mus1 SINE Alu 24 148 0 6 1175 221 170 0 36 chr1 77397715 77397770 -119797662 + GA-rich Low_complexity Low_complexity 3 55 0 6 1175 320 271 34 16 chr1 77398112 77398244 -119797188 + B4 SINE B4 1 134 -158 6 1175 1726 162 133 20 chr1 77398265 77398618 -119796814 + ORR1B1 LTR MaLR 1 393 -1 6 1175 600 14 0 0 chr1 77398687 77398756 -119796676 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1175 437 18 35 0 chr1 77399863 77399920 -119795512 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 6 1175 441 0 0 0 chr1 77400121 77400170 -119795262 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1175 236 127 18 0 chr1 77401872 77401927 -119793505 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 6 1175 777 201 0 46 chr1 77401927 77402078 -119793354 - B1_Mus2 SINE Alu -1 146 3 6 1175 240 143 0 0 chr1 77402089 77402131 -119793301 + (CAT)n Simple_repeat Simple_repeat 1 42 0 6 1175 242 29 0 28 chr1 77402568 77402604 -119792828 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1175 539 271 0 8 chr1 77402779 77402913 -119792519 + ID_B1 SINE B4 86 218 -6 6 1175 288 0 0 0 chr1 77403221 77403253 -119792179 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1175 537 16 0 0 chr1 77405343 77405405 -119790027 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1175 355 278 105 0 chr1 77405577 77405710 -119789722 + B1F SINE Alu 3 149 0 6 1175 962 84 0 7 chr1 77405711 77405854 -119789578 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 6 1175 1180 85 22 6 chr1 77405855 77406033 -119789399 + B2_Mm2 SINE B2 7 187 -8 6 1175 510 17 0 0 chr1 77406033 77406092 -119789340 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 6 1175 402 331 36 6 chr1 77406798 77406965 -119788467 + MLT1J2 LTR MaLR 56 227 -221 6 1175 229 236 77 22 chr1 77407009 77407100 -119788332 + MLT1J2 LTR MaLR 331 426 -22 6 1175 414 0 0 0 chr1 77407619 77407665 -119787767 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1175 181 360 23 0 chr1 77407682 77407768 -119787664 - MIR SINE MIR -86 176 89 6 1175 240 328 69 46 chr1 77408085 77408216 -119787216 + ORR1E LTR MaLR 1 134 -225 6 1175 614 188 0 7 chr1 77408206 77408331 -119787101 - B1_Mus2 SINE Alu -18 129 11 6 1175 607 221 7 14 chr1 77410369 77410507 -119784925 - ID_B1 SINE B4 -4 220 84 6 1175 363 304 157 20 chr1 77410944 77411142 -119784290 - LFSINE_Vert SINE SINE -231 228 4 6 1175 1426 43 43 5 chr1 77412001 77412161 -119783271 + B2_Mm1a SINE B2 2 160 -33 6 1175 279 0 0 0 chr1 77412161 77412192 -119783240 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1175 1426 43 43 5 chr1 77412192 77412216 -119783216 + B2_Mm1a SINE B2 161 192 -1 6 1175 242 27 0 75 chr1 77412233 77412273 -119783159 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1175 25 0 0 0 chr1 77412320 77412345 -119783087 + AT_rich Low_complexity Low_complexity 1 25 0 6 1175 270 0 0 0 chr1 77414047 77414077 -119781355 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1175 1195 49 7 0 chr1 77414196 77414340 -119781092 + B1_Mm SINE Alu 2 146 -1 6 1175 858 109 0 0 chr1 77414353 77414481 -119780951 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 6 1175 366 304 26 65 chr1 77416010 77416165 -119779267 + RSINE1 SINE B4 14 162 -3 6 1175 180 0 0 0 chr1 77416166 77416186 -119779246 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1175 528 263 98 30 chr1 77416568 77416803 -119778629 - MER58B DNA MER1_type -21 320 70 6 1175 30 0 0 0 chr1 77417249 77417279 -119778153 + AT_rich Low_complexity Low_complexity 1 30 0 6 1175 416 139 20 0 chr1 77420948 77421049 -119774383 + (CAGA)n Simple_repeat Simple_repeat 4 106 0 6 1175 204 125 0 0 chr1 77421328 77421360 -119774072 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 1175 189 94 0 0 chr1 77421863 77421895 -119773537 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1175 211 240 133 20 chr1 77421898 77421996 -119773436 + RSINE1 SINE B4 34 142 -23 6 1175 682 235 48 43 chr1 77422516 77422747 -119772685 + B4A SINE B4 2 233 -59 6 1175 212 154 0 55 chr1 77424387 77424442 -119770990 + A-rich Low_complexity Low_complexity 3 54 0 6 1175 362 304 18 0 chr1 77424502 77424667 -119770765 + (CA)n Simple_repeat Simple_repeat 1 167 0 6 1175 1212 108 17 22 chr1 77425321 77425501 -119769931 - B2_Mm2 SINE B2 -15 180 2 6 1175 514 183 11 0 chr1 77426863 77426956 -119768476 + B1_Mur4 SINE Alu 57 150 0 6 1175 347 301 120 0 chr1 77426999 77427182 -119768250 + MER2 DNA MER2_type 140 344 -1 6 1175 185 65 32 0 chr1 77427877 77427908 -119767524 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1175 273 304 154 77 chr1 77428609 77428791 -119766641 - MER58A DNA MER1_type -2 222 27 6 1175 1001 155 113 15 chr1 77428825 77429028 -119766404 - URR1B DNA MER1_type -2 223 1 6 1175 506 302 140 63 chr1 77429078 77429378 -119766054 + ORR1E LTR MaLR 27 349 -10 6 1175 489 335 87 40 chr1 77430389 77430580 -119764852 - B4 SINE B4 -1 291 87 7 1175 1352 73 11 11 chr1 77430580 77430761 -119764671 + B2_Mm2 SINE B2 1 181 -14 7 1175 489 335 87 40 chr1 77430761 77430846 -119764586 - B4 SINE B4 -206 86 3 7 1175 189 0 0 0 chr1 77430981 77431002 -119764430 + (CG)n Simple_repeat Simple_repeat 1 21 0 7 1175 333 0 0 0 chr1 77431002 77431038 -119764394 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1175 552 95 0 0 chr1 77431038 77431122 -119764310 + (GA)n Simple_repeat Simple_repeat 2 85 0 7 1175 21 0 0 0 chr1 77431164 77431185 -119764247 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 512 261 104 38 chr1 77432329 77432512 -119762920 + B4A SINE B4 1 195 -97 7 1175 357 43 0 0 chr1 77432544 77432591 -119762841 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 7 1175 198 91 0 0 chr1 77432600 77432633 -119762799 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1175 451 249 116 97 chr1 77433413 77433680 -119761752 - B4 SINE B4 -16 276 5 7 1175 22 35 0 0 chr1 77435529 77435558 -119759874 + AT_rich Low_complexity Low_complexity 1 29 0 7 1175 318 110 0 52 chr1 77435627 77435643 -119759789 + polypurine Low_complexity Low_complexity 3 17 0 7 1175 1213 55 0 7 chr1 77435643 77435791 -119759641 + B1_Mm SINE Alu 1 147 0 7 1175 318 110 0 52 chr1 77435791 77435851 -119759581 + GA-rich Low_complexity Low_complexity 18 75 0 7 1175 336 220 32 21 chr1 77435851 77435944 -119759488 + ID_B1 SINE B4 130 223 -1 7 1175 25 51 0 0 chr1 77435944 77435983 -119759449 + AT_rich Low_complexity Low_complexity 1 39 0 7 1175 255 263 40 0 chr1 77436422 77436498 -119758934 + MER5A1 DNA MER1_type 18 96 -70 7 1175 254 254 95 0 chr1 77436691 77436754 -119758678 + ID4 SINE ID 2 70 -13 7 1175 189 171 0 0 chr1 77436765 77436800 -119758632 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1175 21 57 0 0 chr1 77437954 77437989 -119757443 + AT_rich Low_complexity Low_complexity 1 35 0 7 1175 626 145 123 51 chr1 77438948 77439086 -119756346 - B1_Mus1 SINE Alu 0 148 1 7 1175 805 119 17 0 chr1 77439122 77439240 -119756192 + PB1D9 SINE Alu 1 120 0 7 1175 243 0 0 0 chr1 77439253 77439280 -119756152 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1175 189 0 0 0 chr1 77439280 77439301 -119756131 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1175 21 57 0 0 chr1 77440000 77440035 -119755397 + AT_rich Low_complexity Low_complexity 1 35 0 7 1175 1248 34 0 0 chr1 77440201 77440347 -119755085 - B1_Mm SINE Alu -1 146 1 7 1175 703 242 43 57 chr1 77441762 77441972 -119753460 - ID_B1 SINE B4 -14 210 4 7 1175 249 33 0 0 chr1 77444010 77444040 -119751392 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1175 256 294 18 27 chr1 77445212 77445324 -119750108 + PB1D7 SINE Alu 10 120 0 7 1175 441 0 0 0 chr1 77445483 77445532 -119749900 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1175 464 251 169 54 chr1 77446152 77446413 -119749019 + B4A SINE B4 2 292 0 7 1175 23 0 0 0 chr1 77447271 77447294 -119748138 + AT_rich Low_complexity Low_complexity 1 23 0 7 1175 820 259 133 9 chr1 77447555 77447879 -119747553 - MER58D DNA MER1_type -2 384 21 7 1175 403 299 31 46 chr1 77448428 77448624 -119746808 + B3A SINE B2 1 193 -5 7 1175 391 221 29 9 chr1 77449050 77449155 -119746277 - B4A SINE B4 0 292 186 7 1175 230 262 136 45 chr1 77449174 77449262 -119746170 - B4A SINE B4 -152 140 45 7 1175 339 223 139 0 chr1 77452080 77452195 -119743237 - B4A SINE B4 -142 150 8 7 1175 746 192 63 11 chr1 77452794 77452968 -119742464 + B3 SINE B2 27 209 -7 7 1175 29 0 0 0 chr1 77452982 77453011 -119742421 + AT_rich Low_complexity Low_complexity 1 29 0 7 1175 227 212 134 15 chr1 77453017 77453084 -119742348 + ID4 SINE ID 8 82 -1 7 1175 300 27 0 0 chr1 77453842 77453879 -119741553 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1175 255 61 0 0 chr1 77454368 77454401 -119741031 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1175 251 317 0 61 chr1 77455466 77455597 -119739835 + GA-rich Low_complexity Low_complexity 2 124 0 7 1175 486 0 0 0 chr1 77456048 77456102 -119739330 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1175 577 117 0 64 chr1 77456201 77456311 -119739121 + B1_Mus2 SINE Alu 45 147 0 7 1175 350 259 0 24 chr1 77457212 77457295 -119738137 + BC1_Mm scRNA scRNA 1 81 -71 7 1175 250 263 39 26 chr1 77458157 77458235 -119737197 - PB1D10 SINE Alu -1 116 38 7 1175 225 0 0 0 chr1 77459413 77459438 -119735994 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1175 319 287 11 11 chr1 77460353 77460448 -119734984 - PB1D10 SINE Alu -22 95 1 7 1175 322 243 125 0 chr1 77460568 77460712 -119734720 - Charlie23a DNA MER1_type -39 300 139 7 1175 21 0 0 0 chr1 77461258 77461279 -119734153 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 203 176 19 38 chr1 77461908 77461961 -119733471 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 7 1175 214 175 0 0 chr1 77462698 77462738 -119732694 - PB1D9 SINE Alu -19 101 62 7 1176 360 94 0 0 chr1 77463630 77463683 -119731749 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1176 232 164 46 123 chr1 77464953 77465148 -119730284 + (CATCC)n Simple_repeat Simple_repeat 1 180 0 7 1176 201 322 77 11 chr1 77465355 77465446 -119729986 - MIR SINE MIR -73 189 93 7 1176 250 265 65 12 chr1 77466157 77466272 -119729160 - MIRb SINE MIR -34 228 105 7 1176 186 118 0 0 chr1 77467639 77467673 -119727759 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1176 576 230 48 41 chr1 77468393 77468538 -119726894 + B1_Mus2 SINE Alu 2 147 0 7 1176 539 144 0 7 chr1 77468648 77468755 -119726677 + B1_Mm SINE Alu 39 142 -6 7 1176 423 13 79 0 chr1 77468766 77468842 -119726590 + (GGGAA)n Simple_repeat Simple_repeat 2 83 0 7 1176 465 19 0 0 chr1 77469159 77469213 -119726219 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1176 227 244 22 99 chr1 77473463 77473554 -119721878 + ID4 SINE ID 13 96 -56 7 1176 375 254 5 2 chr1 77473592 77473682 -119721750 + PB1D10 SINE Alu 5 96 -54 7 1176 327 222 58 24 chr1 77473757 77473864 -119721568 + B3A SINE B2 1 101 -94 7 1176 737 203 15 15 chr1 77473935 77474070 -119721362 + B1_Mus2 SINE Alu 5 139 -8 7 1176 26 0 0 0 chr1 77474082 77474108 -119721324 + AT_rich Low_complexity Low_complexity 1 26 0 7 1176 4470 16 2 0 chr1 77474108 77474600 -119720832 + MT2_Mm LTR ERVL 1 493 0 7 1176 41564 14 14 0 chr1 77474600 77479887 -119715545 + MERVL-int LTR ERVL 1 5360 -125 7 1176 362 167 46 35 chr1 77479887 77479974 -119715458 + ORR1A3-int LTR MaLR 553 640 -1323 7 1176 321 0 0 0 chr1 77479974 77480012 -119715420 + MERVL-int LTR ERVL 5448 5485 0 7 1176 3970 16 2 0 chr1 77480012 77480499 -119714933 + MT2_Mm LTR ERVL 1 488 -5 7 1176 252 0 0 0 chr1 77480499 77480527 -119714905 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1176 616 242 30 0 chr1 77480555 77480687 -119714745 - B1_Mur4 SINE Alu -13 137 2 7 1176 291 114 0 0 chr1 77480687 77480731 -119714701 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 7 1176 200 290 16 0 chr1 77482064 77482126 -119713306 - MIR SINE MIR -130 132 70 7 1176 276 281 29 68 chr1 77482733 77482836 -119712596 + B1F SINE Alu 18 116 -33 7 1176 411 21 0 0 chr1 77482837 77482885 -119712547 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1176 222 105 0 0 chr1 77483443 77483481 -119711951 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1176 21 36 0 0 chr1 77483559 77483587 -119711845 + AT_rich Low_complexity Low_complexity 1 28 0 7 1176 750 143 0 0 chr1 77483587 77483699 -119711733 - B1_Mur4 SINE Alu -34 116 5 7 1176 252 203 17 0 chr1 77485692 77485751 -119709681 + B4A SINE B4 174 233 -59 7 1176 414 0 0 0 chr1 77485811 77485857 -119709575 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1176 381 43 0 0 chr1 77486450 77486497 -119708935 + (CATA)n Simple_repeat Simple_repeat 2 48 0 7 1176 268 295 17 35 chr1 77486594 77486710 -119708722 - MTD LTR MaLR 0 419 306 7 1176 707 258 88 59 chr1 77486871 77487143 -119708289 + B4A SINE B4 1 280 -12 7 1176 232 255 105 11 chr1 77487332 77487427 -119708005 + MIR SINE MIR 107 210 -52 7 1176 262 328 96 59 chr1 77488069 77488205 -119707227 + B1F SINE Alu 1 141 -8 7 1176 249 313 0 46 chr1 77488216 77488303 -119707129 + ID4_ SINE ID 1 83 0 7 1176 262 232 19 0 chr1 77488767 77488834 -119706598 + B1F SINE Alu 43 146 -3 7 1176 487 220 141 85 chr1 77489350 77489549 -119705883 - B3 SINE B2 -2 214 5 7 1176 844 101 79 26 chr1 77490005 77490157 -119705275 + URR1A DNA MER1_type 67 226 0 7 1176 306 186 56 14 chr1 77491056 77491127 -119704305 - B3A SINE B2 -123 75 2 7 1176 326 301 49 0 chr1 77494292 77494435 -119700997 - Charlie1b DNA MER1_type 0 523 374 7 1176 472 213 74 11 chr1 77494478 77494573 -119700859 - RSINE1 SINE B4 -36 129 29 7 1176 437 297 70 0 chr1 77494623 77494751 -119700681 + B1F1 SINE Alu 5 141 -8 7 1176 286 226 24 184 chr1 77494771 77494977 -119700455 - Charlie1b DNA MER1_type -166 357 185 7 1176 737 224 42 52 chr1 77495166 77495378 -119700054 + B3 SINE B2 3 212 -4 7 1176 740 176 15 0 chr1 77495481 77495617 -119699815 + B1_Mur4 SINE Alu 6 143 -7 7 1176 1039 78 13 7 chr1 77495635 77495790 -119699642 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 7 1176 1208 194 156 0 chr1 77495826 77496140 -119699292 + MTC LTR MaLR 55 417 -4 7 1176 388 245 192 32 chr1 77496281 77496437 -119698995 + B3 SINE B2 1 181 -35 7 1176 450 248 30 76 chr1 77497545 77497676 -119697756 + B1_Mur1 SINE Alu 2 126 -23 7 1176 211 304 50 50 chr1 77500507 77500628 -119694804 + PB1 SINE Alu 2 122 -5 1 1176 451 285 115 43 chr1 77500675 77500884 -119694548 + B4A SINE B4 51 274 -18 2 1176 423 0 0 0 chr1 77500888 77500935 -119694497 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1176 225 65 0 0 chr1 77501050 77501081 -119694351 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1176 417 39 0 0 chr1 77504528 77504579 -119690853 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1176 219 36 0 0 chr1 77506111 77506139 -119689293 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1176 315 0 0 0 chr1 77506139 77506173 -119689259 + (TATG)n Simple_repeat Simple_repeat 1 35 0 7 1176 264 30 0 0 chr1 77506312 77506345 -119689087 + (TAA)n Simple_repeat Simple_repeat 3 35 0 8 1176 26 0 0 0 chr1 77509748 77509774 -119685658 + GC_rich Low_complexity Low_complexity 1 26 0 9 1176 189 0 0 0 chr1 77509807 77509828 -119685604 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1176 215 260 0 0 chr1 77509855 77509905 -119685527 + A-rich Low_complexity Low_complexity 1 50 0 1 1176 258 257 14 0 chr1 77510268 77510342 -119685090 + (TGGA)n Simple_repeat Simple_repeat 2 76 0 1 1176 486 0 0 0 chr1 77510501 77510555 -119684877 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1176 246 236 14 0 chr1 77510555 77510627 -119684805 + GA-rich Low_complexity Low_complexity 1 73 0 1 1176 1112 82 0 0 chr1 77514273 77514419 -119681013 - B1_Mus2 SINE Alu 0 147 2 1 1176 247 231 0 133 chr1 77514615 77514690 -119680742 + MT2B LTR ERVL 173 237 -364 1 1176 416 258 48 16 chr1 77514625 77514751 -119680681 + B1_Mur2 SINE Alu 19 148 -1 1 1176 21 36 0 0 chr1 77514978 77515006 -119680426 + AT_rich Low_complexity Low_complexity 1 28 0 1 1176 549 30 0 0 chr1 77515019 77515086 -119680346 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1176 288 77 0 0 chr1 77515182 77515221 -119680211 + (GGA)n Simple_repeat Simple_repeat 1 39 0 2 1176 254 289 0 13 chr1 77515221 77515298 -119680134 - B3A SINE B2 -122 76 1 2 1176 637 240 116 35 chr1 77516090 77516289 -119679143 - B3 SINE B2 -1 215 1 2 1176 636 139 0 10 chr1 77516863 77516965 -119678467 + B1_Mur4 SINE Alu 38 138 -12 2 1176 212 0 36 0 chr1 77516965 77516993 -119678439 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2 1176 243 61 0 0 chr1 77518169 77518202 -119677230 + (C)n Simple_repeat Simple_repeat 1 33 0 2 1176 192 77 0 0 chr1 77518665 77518691 -119676741 + (AGGGGG)n Simple_repeat Simple_repeat 4 29 0 2 1176 21 0 0 0 chr1 77519354 77519375 -119676057 + AT_rich Low_complexity Low_complexity 1 21 0 2 1176 660 221 7 20 chr1 77519411 77519559 -119675873 - B1F2 SINE Alu -1 148 3 2 1176 32 26 0 0 chr1 77519807 77519846 -119675586 + AT_rich Low_complexity Low_complexity 1 39 0 2 1176 350 259 0 56 chr1 77520362 77520619 -119674813 + (TA)n Simple_repeat Simple_repeat 1 242 0 3 1176 231 270 13 13 chr1 77522582 77522657 -119672775 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1176 337 307 136 7 chr1 77522688 77522842 -119672590 - B4A SINE B4 -19 273 100 3 1176 533 261 111 81 chr1 77523061 77523395 -119672037 - L1MA8 LINE L1 -440 5851 5508 3 1176 589 255 19 86 chr1 77523495 77523705 -119671727 - B3A SINE B2 0 198 3 3 1176 279 312 0 20 chr1 77525859 77525957 -119669475 + CT-rich Low_complexity Low_complexity 1 96 0 3 1176 409 234 248 8 chr1 77526014 77526143 -119669289 + RSINE1 SINE B4 3 162 -3 3 1176 555 56 0 0 chr1 77526147 77526218 -119669214 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1176 243 0 0 0 chr1 77527194 77527221 -119668211 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1176 966 126 7 14 chr1 77527221 77527357 -119668075 - B1_Mus1 SINE Alu -9 139 3 3 1176 388 307 133 18 chr1 77527513 77527798 -119667634 + L3 LINE CR1 3970 4287 -202 4 1176 447 227 17 11 chr1 77528152 77528326 -119667106 + (TATG)n Simple_repeat Simple_repeat 2 176 0 4 1176 311 202 0 11 chr1 77528345 77528435 -119666997 + (TATG)n Simple_repeat Simple_repeat 4 92 0 4 1176 287 299 0 0 chr1 77528437 77528504 -119666928 - ID4_ SINE ID -12 71 5 4 1176 573 305 18 18 chr1 77528506 77528730 -119666702 - MER33 DNA MER1_type -100 224 1 4 1176 385 274 9 19 chr1 77529769 77529877 -119665555 + PB1D10 SINE Alu 6 112 -5 4 1176 332 260 13 0 chr1 77529884 77529961 -119665471 + ID4_ SINE ID 3 80 -3 4 1176 255 219 123 0 chr1 77530228 77530301 -119665131 - MIR SINE MIR -149 113 32 4 1176 273 343 87 40 chr1 77530808 77530981 -119664451 - MER20 DNA MER1_type -7 212 32 4 1176 919 149 14 0 chr1 77531388 77531529 -119663903 + B1_Mur4 SINE Alu 3 145 -5 4 1176 192 40 0 0 chr1 77531531 77531556 -119663876 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1176 1121 212 0 19 chr1 77531998 77532205 -119663227 - B3 SINE B2 -11 205 3 5 1176 398 135 14 0 chr1 77532249 77532271 -119663161 + (TTC)n Simple_repeat Simple_repeat 1 22 0 5 1176 1413 51 0 0 chr1 77532271 77532449 -119662983 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1176 398 135 14 0 chr1 77532449 77532500 -119662932 + (TTC)n Simple_repeat Simple_repeat 3 54 0 5 1176 1125 133 0 0 chr1 77533507 77533861 -119661571 + (CA)n Simple_repeat Simple_repeat 1 354 0 5 1176 194 369 95 16 chr1 77533873 77534063 -119661369 - L2b LINE L2 -40 3335 3131 5 1176 877 227 23 78 chr1 77534168 77534474 -119660958 + B4A SINE B4 4 292 0 5 1176 22 0 0 0 chr1 77534646 77534668 -119660764 + AT_rich Low_complexity Low_complexity 1 22 0 5 1176 560 170 0 13 chr1 77536066 77536221 -119659211 + (TCTG)n Simple_repeat Simple_repeat 2 154 0 5 1176 30 27 0 0 chr1 77537072 77537109 -119658323 + AT_rich Low_complexity Low_complexity 1 37 0 5 1176 837 133 0 0 chr1 77537459 77537594 -119657838 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 6 1176 402 21 0 0 chr1 77538590 77538637 -119656795 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1176 372 179 0 0 chr1 77540024 77540102 -119655330 + C-rich Low_complexity Low_complexity 4 81 0 6 1176 251 267 174 58 chr1 77543475 77543630 -119651802 - MIRb SINE MIR -15 253 81 6 1176 243 173 0 0 chr1 77543765 77543817 -119651615 + T-rich Low_complexity Low_complexity 1 52 0 6 1176 328 134 313 18 chr1 77544200 77544315 -119651117 - B2_Mm2 SINE B2 0 195 47 6 1176 1052 124 19 0 chr1 77544385 77544546 -119650886 - B2_Mm1t SINE B2 -26 167 4 6 1176 322 253 0 12 chr1 77544677 77544761 -119650671 + MTEb LTR MaLR 287 369 -10 6 1176 735 181 25 12 chr1 77545091 77545229 -119650203 + ORR1E-int LTR MaLR 1388 1527 -53 6 1176 789 278 128 36 chr1 77545229 77545558 -119649874 + ORR1E LTR MaLR 1 359 0 6 1176 274 257 134 7 chr1 77545677 77545849 -119649583 - L1M5 LINE L1 -634 5539 5347 6 1176 21 36 0 0 chr1 77546517 77546545 -119648887 + AT_rich Low_complexity Low_complexity 1 28 0 7 1176 2906 109 25 16 chr1 77547521 77547960 -119647472 + Lx4A LINE L1 6614 7056 -2 7 1176 252 183 33 16 chr1 77547983 77548044 -119647388 - RCHARR1 DNA MER1_type -494 480 419 7 1176 27 29 0 0 chr1 77548064 77548098 -119647334 + AT_rich Low_complexity Low_complexity 1 34 0 7 1176 578 261 130 34 chr1 77549029 77549380 -119646052 + MTD LTR MaLR 6 403 -16 7 1176 819 213 80 10 chr1 77550285 77550484 -119644948 + ID_B1 SINE B4 2 214 -10 7 1176 1123 225 63 7 chr1 77550613 77550899 -119644533 - Lx9 LINE L1 -7 7637 7336 7 1176 617 299 60 0 chr1 77551084 77551268 -119644164 - MER58A DNA MER1_type -26 198 4 7 1176 405 30 14 43 chr1 77552147 77552216 -119643216 - Lx LINE L1 -3 6651 6585 7 1176 203 231 0 0 chr1 77552385 77552416 -119643016 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 7 1176 180 0 0 0 chr1 77552416 77552436 -119642996 + (CCA)n Simple_repeat Simple_repeat 1 20 0 8 1176 203 231 0 0 chr1 77552436 77552456 -119642976 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 1176 769 134 48 21 chr1 77553896 77554041 -119641391 - B1_Mur4 SINE Alu 0 150 2 8 1176 617 269 41 50 chr1 77554225 77554444 -119640988 - ID_B1 SINE B4 0 224 8 8 1176 869 289 90 22 chr1 77555235 77555646 -119639786 - L1M4c LINE L1 -1200 5176 4738 8 1176 264 257 109 48 chr1 77555631 77555778 -119639654 - L1MA9 LINE L1 -47 6244 6089 8 1176 591 291 112 4 chr1 77555776 77556045 -119639387 - L1MA9 LINE L1 -413 5899 5602 8 1176 345 238 25 0 chr1 77556050 77556130 -119639302 - L1M4c LINE L1 -3845 2531 2450 8 1176 768 272 113 11 chr1 77556147 77556529 -119638903 - L1M4c LINE L1 -4046 2338 1918 8 1176 288 0 0 0 chr1 77556677 77556709 -119638723 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1176 474 253 38 78 chr1 77556768 77556924 -119638508 - B4A SINE B4 -79 145 2 8 1176 305 243 13 63 chr1 77556924 77557003 -119638429 - ID2 SINE ID -1 82 8 8 1176 332 347 103 46 chr1 77557231 77557533 -119637899 - L1M5 LINE L1 -416 5824 5506 8 1176 746 248 23 64 chr1 77557786 77558006 -119637426 + MTE2b LTR MaLR 3 213 -166 9 1176 1725 84 42 0 chr1 77558051 77558290 -119637142 + L1_Mus1 LINE L1 6316 6564 -3 9 1176 4050 162 54 19 chr1 77558314 77559038 -119636394 + Lx5 LINE L1 6299 7047 -3 9 1176 671 273 109 0 chr1 77559065 77559248 -119636184 - B3 SINE B2 -13 203 1 9 1176 336 236 129 5 chr1 77559251 77559370 -119636062 + MTE2b LTR MaLR 209 351 -28 9 1176 649 235 15 29 chr1 77559365 77559501 -119635931 - B1_Mur1 SINE Alu -1 148 15 9 1176 886 204 91 10 chr1 77559504 77559702 -119635730 + B3 SINE B2 3 216 0 9 1176 192 258 194 0 chr1 77559905 77559967 -119635465 + MIR SINE MIR 29 102 -160 9 1176 1421 65 38 0 chr1 77560154 77560338 -119635094 + B2_Mm2 SINE B2 1 191 -4 9 1176 395 291 47 65 chr1 77560699 77560868 -119634564 + B4A SINE B4 127 292 0 9 1176 294 29 0 0 chr1 77560884 77560919 -119634513 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1176 632 346 47 67 chr1 77561134 77561493 -119633939 + ORR1E LTR MaLR 6 357 -2 1 1176 414 337 88 47 chr1 77561618 77561892 -119633540 + B4 SINE B4 8 292 0 1 1176 24 0 0 0 chr1 77562147 77562171 -119633261 + AT_rich Low_complexity Low_complexity 1 24 0 1 1176 252 332 58 22 chr1 77562360 77562585 -119632847 + L1M5 LINE L1 4591 4823 -1323 1 1176 227 319 62 70 chr1 77563034 77563162 -119632270 - LTR79 LTR ERVL -305 222 96 1 1176 889 228 53 90 chr1 77563432 77563731 -119631701 - B4A SINE B4 -4 288 1 1 1176 193 304 63 0 chr1 77563741 77563820 -119631612 + MIRb SINE MIR 126 209 -59 1 1176 396 282 18 18 chr1 77564541 77564653 -119630779 + MIR SINE MIR 116 227 -35 1 1176 21 0 0 0 chr1 77565145 77565166 -119630266 + AT_rich Low_complexity Low_complexity 1 21 0 1 1176 396 0 0 0 chr1 77565334 77565378 -119630054 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1176 261 322 33 0 chr1 77566027 77566117 -119629315 - MER58A DNA MER1_type -96 128 36 1 1176 1563 118 154 64 chr1 77566635 77566933 -119628499 + ORR1A4 LTR MaLR 1 325 -4 1 1176 583 224 107 18 chr1 77566958 77567126 -119628306 + Lx7 LINE L1 7036 7218 -478 1 1176 928 109 0 21 chr1 77567127 77567268 -119628164 + ORR1A1 LTR MaLR 141 278 -68 1 1176 5115 82 24 35 chr1 77567570 77568138 -119627294 + L1VL4 LINE L1 193 744 -5558 1 1176 1319 60 21 21 chr1 77568138 77568324 -119627108 + B2_Mm2 SINE B2 2 187 -8 1 1176 5115 62 16 32 chr1 77568324 77568636 -119626796 + L1VL4 LINE L1 745 1064 -2495 1 1176 1080 83 21 0 chr1 77568636 77568780 -119626652 + B1_Mm SINE Alu 1 147 0 1 1176 4128 52 13 30 chr1 77568780 77569198 -119626234 + L1VL4 LINE L1 1065 1467 -2092 1 1176 12479 147 28 7 chr1 77569196 77570926 -119624506 + Lx2 LINE L1 3542 5292 -585 1 1176 1232 94 44 0 chr1 77570926 77571078 -119624354 + B2_Mm2 SINE B2 1 153 -42 1 1176 423 0 0 0 chr1 77571078 77571125 -119624307 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1176 1232 94 44 0 chr1 77571125 77571153 -119624279 + B2_Mm2 SINE B2 154 187 -8 1 1176 12479 122 35 10 chr1 77571153 77572460 -119622972 + Lx2 LINE L1 5293 6643 -354 1 1176 1406 148 0 0 chr1 77572460 77572677 -119622755 + Lx2 LINE L1 6775 6991 -6 1 1176 570 229 0 0 chr1 77572683 77572805 -119622627 + Lx7 LINE L1 7207 7328 -368 1 1176 348 24 0 0 chr1 77572976 77573017 -119622415 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1176 243 0 0 0 chr1 77573353 77573380 -119622052 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1176 378 0 0 0 chr1 77573380 77573421 -119622011 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1176 315 49 0 0 chr1 77573645 77573686 -119621746 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1176 486 0 0 0 chr1 77573686 77573739 -119621693 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1176 225 0 0 0 chr1 77573900 77573925 -119621507 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1176 384 22 0 0 chr1 77574425 77574470 -119620962 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1176 231 276 57 11 chr1 77574709 77574797 -119620635 + L1M5 LINE L1 5566 5657 -467 1 1176 579 300 40 0 chr1 77575071 77575221 -119620211 - RSINE1 SINE B4 -8 157 2 1 1176 1050 143 0 0 chr1 77575454 77575629 -119619803 + (GAA)n Simple_repeat Simple_repeat 3 177 0 1 1176 451 286 6 6 chr1 77575630 77575809 -119619623 + GA-rich Low_complexity Low_complexity 2 180 0 1 1176 1150 240 121 49 chr1 77576009 77576409 -119619023 - MTD LTR MaLR -16 403 1 1 1176 1604 241 146 75 chr1 77576409 77576518 -119618914 - MTD-int LTR MaLR 0 1258 1134 1 1176 6023 33 3 4 chr1 77576518 77577245 -119618187 - L1Md_F3 LINE L1 -1 6583 5858 1 1176 1604 241 146 75 chr1 77577245 77577799 -119617633 - MTD-int LTR MaLR -125 1133 548 1 1176 876 45 0 9 chr1 77577813 77577925 -119617507 - B2_Mm2 SINE B2 -83 112 2 1 1176 600 233 129 34 chr1 77577936 77578145 -119617287 - MTD-int LTR MaLR -1010 248 20 1 1176 964 278 171 3 chr1 77578216 77578514 -119616918 - MTD LTR MaLR -27 369 22 1 1176 263 184 9 55 chr1 77579637 77579746 -119615686 + (TATG)n Simple_repeat Simple_repeat 3 106 0 1 1176 655 260 77 6 chr1 77579746 77579916 -119615516 - B3A SINE B2 -16 182 1 1 1176 643 301 93 71 chr1 77580328 77580875 -119614557 - L1_Rod LINE L1 -3028 2852 2279 1 1176 761 181 34 14 chr1 77580875 77580888 -119614544 - B1_Mur1 SINE Alu 0 149 138 1 1176 294 29 0 0 chr1 77580888 77580923 -119614509 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1 1176 761 181 34 14 chr1 77580923 77581055 -119614377 - B1_Mur1 SINE Alu -12 137 1 1 1176 643 313 93 53 chr1 77581055 77581095 -119614337 - L1_Rod LINE L1 -3556 2291 2267 1 1176 1066 86 128 6 chr1 77581095 77581107 -119614325 - B2_Mm2 SINE B2 -9 186 175 1 1176 551 40 14 0 chr1 77581107 77581181 -119614251 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1 1176 1066 86 128 6 chr1 77581181 77581332 -119614100 - B2_Mm2 SINE B2 -21 174 4 1 1176 643 313 93 53 chr1 77581332 77581504 -119613928 - L1_Rod LINE L1 -3581 2266 2095 1 1176 259 220 43 106 chr1 77581820 77582008 -119613424 + RMER17A LTR ERVK 313 488 -263 1 1176 380 259 34 51 chr1 77582672 77582790 -119612642 - URR1B DNA MER1_type 0 225 110 1 1176 241 274 158 51 chr1 77582790 77582864 -119612568 + CYRA11_Mm Unknown Y-chromosome 172 384 -233 1 1176 343 361 144 5 chr1 77583003 77583198 -119612234 - MLT1A1 LTR MaLR -30 378 157 1 1176 285 360 8 8 chr1 77583316 77583442 -119611990 - Lx7 LINE L1 -551 7145 7020 1 1176 269 291 68 0 chr1 77583894 77584011 -119611421 - L1MA4 LINE L1 -383 5917 5793 1 1176 295 300 82 51 chr1 77584151 77584309 -119611123 - RSINE1 SINE B4 0 165 3 1 1176 269 310 28 50 chr1 77584310 77584490 -119610942 - L1MD2 LINE L1 -101 6258 6083 1 1176 546 315 39 11 chr1 77586032 77586212 -119609220 - MER20 DNA MER1_type -5 214 30 1 1176 248 218 98 49 chr1 77587290 77587372 -119608060 + MIR3 SINE MIR 111 196 -12 1 1176 809 261 91 28 chr1 77587586 77587834 -119607598 - MTE2b LTR MaLR -90 289 41 1 1176 232 307 27 0 chr1 77587985 77588060 -119607372 - ID4 SINE ID 0 83 7 1 1176 369 264 98 18 chr1 77588069 77588181 -119607251 - PB1 SINE Alu -2 125 5 1 1176 248 291 0 104 chr1 77588110 77588206 -119607226 - ID_B1 SINE B4 -70 154 69 1 1176 24 32 0 0 chr1 77588360 77588391 -119607041 + AT_rich Low_complexity Low_complexity 1 31 0 1 1176 291 235 99 0 chr1 77588552 77588633 -119606799 - MER117 DNA MER1_type -103 94 6 1 1176 188 333 82 16 chr1 77588737 77588859 -119606573 - L4 LINE RTE -385 1644 1515 1 1176 324 332 117 13 chr1 77589801 77590010 -119605422 - L1MD LINE L1 -1080 5066 4848 1 1176 495 0 0 0 chr1 77590010 77590065 -119605367 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1176 324 332 117 13 chr1 77590065 77590154 -119605278 - L1MD LINE L1 -1299 4847 4739 1 1176 662 272 47 17 chr1 77590187 77590359 -119605073 - B3A SINE B2 -17 181 5 1 1176 351 0 0 0 chr1 77590464 77590503 -119604929 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1176 417 20 0 0 chr1 77590503 77590552 -119604880 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1176 282 116 0 0 chr1 77591071 77591114 -119604318 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1176 21 57 0 0 chr1 77591224 77591259 -119604173 + AT_rich Low_complexity Low_complexity 1 35 0 1 1176 254 254 92 50 chr1 77591264 77591384 -119604048 - L4 LINE RTE -314 1715 1591 1 1176 3180 151 113 0 chr1 77591410 77591959 -119603473 + RMER19C LTR ERVK 1 611 0 1 1176 587 296 99 9 chr1 77592119 77592407 -119603025 - ORR1E LTR MaLR 0 379 35 1 1176 1318 93 16 6 chr1 77592994 77593177 -119602255 + B2_Mm2 SINE B2 2 186 -9 1 1176 420 97 0 0 chr1 77593408 77593470 -119601962 + (CAAT)n Simple_repeat Simple_repeat 2 63 0 1 1176 180 0 0 0 chr1 77593983 77594003 -119601429 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1176 260 198 0 36 chr1 77594022 77594106 -119601326 + A-rich Low_complexity Low_complexity 3 83 0 1 1176 183 80 0 0 chr1 77594249 77594274 -119601158 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1177 757 199 7 27 chr1 77594955 77595105 -119600327 - B1_Mur1 SINE Alu -2 147 1 1 1177 759 22 0 0 chr1 77595361 77595450 -119599982 + (TC)n Simple_repeat Simple_repeat 1 89 0 1 1177 558 0 0 0 chr1 77598916 77598978 -119596454 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1 1177 895 174 14 0 chr1 77598980 77599124 -119596308 - B1_Mur3 SINE Alu -3 146 1 1 1177 1132 65 0 0 chr1 77599205 77599343 -119596089 - B1_Mus1 SINE Alu -9 139 2 1 1177 363 75 0 0 chr1 77599361 77599382 -119596050 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1177 582 15 0 0 chr1 77599382 77599449 -119595983 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1177 363 75 0 0 chr1 77599449 77599480 -119595952 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1177 610 214 24 8 chr1 77599486 77599613 -119595819 - B3 SINE B2 -86 130 2 1 1177 533 284 67 0 chr1 77599616 77599750 -119595682 - ID_B1 SINE B4 0 224 82 1 1177 681 123 0 0 chr1 77600043 77600149 -119595283 + (CCTA)n Simple_repeat Simple_repeat 1 106 0 1 1177 757 147 50 35 chr1 77600943 77601084 -119594348 - B1_Mus2 SINE Alu 0 147 5 1 1177 246 306 56 32 chr1 77600997 77601122 -119594310 + YREP_Mm Unknown Unknown 222 349 -1463 1 1177 371 320 68 39 chr1 77602023 77602228 -119593204 + MIRb SINE MIR 43 253 -15 1 1177 551 239 0 13 chr1 77602443 77602600 -119592832 + CT-rich Low_complexity Low_complexity 2 156 0 1 1177 470 182 0 26 chr1 77602664 77602708 -119592724 + T-rich Low_complexity Low_complexity 70 111 0 1 1177 1244 89 0 6 chr1 77602708 77602889 -119592543 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1177 470 182 0 26 chr1 77602889 77602932 -119592500 + T-rich Low_complexity Low_complexity 27 69 0 1 1177 1222 54 0 0 chr1 77602932 77603079 -119592353 - B1_Mm SINE Alu 0 147 1 1 1177 470 182 0 26 chr1 77603079 77603103 -119592329 + T-rich Low_complexity Low_complexity 3 26 0 1 1177 870 161 0 7 chr1 77603502 77603646 -119591786 - B1_Mur3 SINE Alu -5 144 2 1 1177 930 122 0 0 chr1 77603649 77603829 -119591603 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1177 1305 51 0 0 chr1 77603840 77604018 -119591414 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 1177 6370 102 20 16 chr1 77604018 77605181 -119590251 - Lx LINE L1 -112 6542 5356 1 1177 1389 85 11 0 chr1 77605181 77605370 -119590062 - B2_Mm1t SINE B2 0 193 3 1 1177 4081 129 38 27 chr1 77605370 77605611 -119589821 - Lx LINE L1 -528 5355 5131 1 1177 27 0 0 0 chr1 77605986 77606013 -119589419 + AT_rich Low_complexity Low_complexity 1 27 0 1 1177 7318 43 27 7 chr1 77606256 77606271 -119589161 - L1Md_F3 LINE L1 -13 6571 6563 1 1177 6108 87 7 2 chr1 77606271 77607121 -119588311 - L1_Mus3 LINE L1 -1 6637 5784 1 1177 28107 113 16 4 chr1 77607121 77612897 -119582535 - L1Md_F3 LINE L1 -22 6562 718 1 1177 378 380 19 6 chr1 77613083 77613242 -119582190 + MER63A DNA AcHobo 7 167 -43 2 1177 564 15 0 0 chr1 77613568 77613633 -119581799 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1177 371 348 39 79 chr1 77615348 77615526 -119579906 + B4 SINE B4 52 222 -70 2 1177 186 43 0 0 chr1 77615618 77615641 -119579791 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1177 1624 227 43 27 chr1 77615745 77616116 -119579316 - Lx5 LINE L1 0 7050 6674 2 1177 639 261 44 6 chr1 77617477 77617635 -119577797 + RSINE1 SINE B4 2 165 0 2 1177 471 205 0 0 chr1 77617641 77617719 -119577713 + B1_Mur2 SINE Alu 31 108 -41 2 1177 543 56 0 0 chr1 77617722 77617793 -119577639 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1177 440 306 133 30 chr1 77618668 77618931 -119576501 + B4 SINE B4 3 292 0 2 1177 266 228 75 11 chr1 77620409 77620502 -119574930 + L1ME4a LINE L1 6020 6118 -6 2 1177 224 219 54 118 chr1 77620646 77620739 -119574693 + MIRb SINE MIR 106 192 -76 2 1177 559 231 53 15 chr1 77620746 77620878 -119574554 + B1F SINE Alu 13 149 0 2 1177 193 91 44 22 chr1 77620882 77620927 -119574505 + A-rich Low_complexity Low_complexity 2 47 0 2 1177 298 361 20 34 chr1 77620962 77621111 -119574321 + RSINE1 SINE B4 3 149 -16 2 1177 204 235 0 0 chr1 77621127 77621195 -119574237 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1177 267 190 0 0 chr1 77621340 77621398 -119574034 + CT-rich Low_complexity Low_complexity 3 60 0 2 1177 296 318 80 65 chr1 77622140 77622337 -119573095 - MLT2E LTR ERVL -438 225 18 2 1177 279 293 151 41 chr1 77622596 77622742 -119572690 - MER5A DNA MER1_type -27 162 1 2 1177 1441 243 63 15 chr1 77622850 77623184 -119572248 - MTEa LTR MaLR -9 370 21 2 1177 470 233 0 0 chr1 77623228 77623318 -119572114 - MTEa-int LTR MaLR -1490 90 1 2 1177 1190 249 91 50 chr1 77623318 77623682 -119571750 - MTEa LTR MaLR 0 379 1 2 1177 466 316 38 6 chr1 77623946 77624105 -119571327 - MIR SINE MIR -97 165 2 2 1177 604 269 62 39 chr1 77624494 77624602 -119570830 + B3A SINE B2 2 118 -80 2 1177 3086 46 57 0 chr1 77624602 77624974 -119570458 + L1Md_F2 LINE L1 6178 6570 -12 2 1177 604 279 72 45 chr1 77624974 77625069 -119570363 + B3A SINE B2 117 213 -3 2 1177 22 0 0 0 chr1 77626512 77626534 -119568898 + AT_rich Low_complexity Low_complexity 1 22 0 2 1177 189 270 58 75 chr1 77627148 77627268 -119568164 + MIR3 SINE MIR 87 204 -4 2 1177 283 301 33 95 chr1 77627935 77628077 -119567355 + MLT1E1A LTR MaLR 289 418 -262 2 1177 201 306 0 0 chr1 77628096 77628168 -119567264 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 2 1177 263 227 0 39 chr1 77628181 77628251 -119567181 - MTD LTR MaLR -341 80 16 2 1177 25 51 0 0 chr1 77628893 77628932 -119566500 + AT_rich Low_complexity Low_complexity 1 39 0 2 1177 243 303 13 26 chr1 77629537 77629615 -119565817 + ID SINE ID 2 78 -146 2 1177 327 311 109 114 chr1 77630835 77631194 -119564238 - L1MC4a LINE L1 -1714 6168 5812 2 1177 210 308 0 0 chr1 77631754 77631861 -119563571 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2 1177 477 0 0 0 chr1 77632148 77632201 -119563231 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1177 1453 213 76 36 chr1 77632914 77633270 -119562162 + ORR1D2 LTR MaLR 1 370 0 2 1177 24 0 0 0 chr1 77633299 77633323 -119562109 + AT_rich Low_complexity Low_complexity 1 24 0 2 1177 928 255 146 21 chr1 77633358 77633686 -119561746 - ORR1D2 LTR MaLR 0 370 2 2 1177 231 311 284 31 chr1 77634231 77634460 -119560972 + L2a LINE L2 3108 3394 -32 2 1177 25 0 0 0 chr1 77634654 77634679 -119560753 + AT_rich Low_complexity Low_complexity 1 25 0 2 1177 2517 140 32 5 chr1 77634686 77635087 -119560345 - MTC LTR MaLR -8 413 2 2 1177 244 291 63 0 chr1 77635302 77635381 -119560051 + PB1D7 SINE Alu 29 112 -8 2 1177 253 241 0 0 chr1 77636518 77636576 -119558856 + (TTA)n Simple_repeat Simple_repeat 1 58 0 2 1177 532 331 15 0 chr1 77636576 77636706 -119558726 - B4 SINE B4 -73 219 88 2 1177 585 28 0 0 chr1 77636712 77636783 -119558649 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 2 1177 1081 223 15 10 chr1 77636820 77637024 -119558408 - B3 SINE B2 -11 205 1 2 1177 396 0 0 0 chr1 77637035 77637079 -119558353 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1177 324 296 0 0 chr1 77637086 77637157 -119558275 - B4 SINE B4 -217 75 5 2 1177 713 218 28 0 chr1 77637375 77637517 -119557915 - B1_Mur1 SINE Alu 0 149 4 2 1177 432 0 0 0 chr1 77638558 77638606 -119556826 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1177 5880 119 5 31 chr1 77638865 77639725 -119555707 + Lx LINE L1 5818 6654 0 2 1177 21 0 0 0 chr1 77640466 77640487 -119554945 + AT_rich Low_complexity Low_complexity 1 21 0 2 1177 328 300 283 0 chr1 77640490 77640670 -119554762 + Charlie1 DNA MER1_type 1724 1954 -827 2 1177 252 41 60 20 chr1 77640793 77640843 -119554589 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1177 1124 279 82 30 chr1 77640851 77641180 -119554252 - ORR1D2 LTR MaLR -24 346 1 2 1177 404 256 135 11 chr1 77641181 77641359 -119554073 + Charlie1 DNA MER1_type 2077 2276 -505 2 1177 548 262 92 88 chr1 77641491 77641551 -119553881 + Charlie1 DNA MER1_type 2320 2389 -392 2 1177 3279 74 5 26 chr1 77641551 77641967 -119553465 + MTB_Mm LTR MaLR 1 407 0 2 1177 548 262 92 88 chr1 77641967 77642328 -119553104 + Charlie1 DNA MER1_type 2390 2743 -38 2 1177 34 42 0 0 chr1 77642563 77642611 -119552821 + AT_rich Low_complexity Low_complexity 1 48 0 2 1177 487 312 110 84 chr1 77642837 77643291 -119552141 - MER77 LTR ERVL -81 526 61 2 1177 981 277 117 0 chr1 77643634 77643883 -119551549 + B4 SINE B4 11 288 -4 2 1177 218 309 11 100 chr1 77644618 77644708 -119550724 + ID4 SINE ID 1 82 -1 2 1177 325 94 0 54 chr1 77644749 77644791 -119550641 + HAL1-3A_ME LINE L1 1976 2017 -841 2 1177 189 0 0 0 chr1 77644791 77644812 -119550620 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1177 325 94 0 54 chr1 77644812 77644825 -119550607 + HAL1-3A_ME LINE L1 2018 2028 -830 2 1177 398 216 81 0 chr1 77645271 77645345 -119550087 - ID4 SINE ID -2 81 2 2 1177 986 158 135 20 chr1 77645473 77645673 -119549759 + URR1A DNA MER1_type 1 223 -3 2 1177 868 295 27 9 chr1 77647125 77647344 -119548088 - ID_B1 SINE B4 0 224 2 2 1177 564 15 0 0 chr1 77647598 77647663 -119547769 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 1177 777 176 0 0 chr1 77647696 77647815 -119547617 - B3 SINE B2 -97 119 1 2 1177 244 350 25 0 chr1 77647842 77647922 -119547510 + MLT1K LTR MaLR 184 265 -330 2 1177 3608 227 45 39 chr1 77649797 77649990 -119545442 + Lx5 LINE L1 5946 6206 -844 2 1177 2643 153 179 55 chr1 77649990 77650604 -119544828 - RMER6C LTR ERVK 0 690 1 2 1177 3608 231 58 20 chr1 77650604 77651282 -119544150 + Lx5 LINE L1 6207 6918 -132 2 1177 1360 280 71 9 chr1 77651509 77651945 -119543487 + Lx8 LINE L1 6717 7179 -294 2 1177 551 254 0 0 chr1 77652007 77652121 -119543311 - Lx6 LINE L1 -151 7309 7196 2 1177 508 343 72 7 chr1 77652120 77652399 -119543033 - L1MA6 LINE L1 -407 5893 5597 2 1177 430 330 104 72 chr1 77652642 77653198 -119542234 + L1ME4a LINE L1 5318 5891 -233 2 1177 1498 290 80 37 chr1 77653292 77653941 -119541491 + Lx9 LINE L1 6948 7624 -20 2 1177 219 36 0 0 chr1 77653998 77654026 -119541406 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1177 3296 130 56 2 chr1 77654027 77654528 -119540904 - RLTR11A LTR ERVK 0 528 1 2 1177 338 314 14 35 chr1 77656030 77656175 -119539257 + Charlie22a DNA MER1_type 62 203 -288 2 1177 1169 228 166 10 chr1 77656845 77657159 -119538273 + MTD LTR MaLR 18 380 -39 2 1177 439 360 52 58 chr1 77657956 77658286 -119537146 + MamRep137 DNA TcMar? 76 403 -41 2 1177 183 321 36 0 chr1 77658568 77658624 -119536808 + L2c LINE L2 2953 3010 -377 2 1177 190 299 46 124 chr1 77660366 77660584 -119534848 + L2c LINE L2 3187 3387 0 2 1177 240 289 60 0 chr1 77660689 77660772 -119534660 - MER5A1 DNA MER1_type -77 89 2 2 1177 425 128 26 0 chr1 77661149 77661227 -119534205 + GA-rich Low_complexity Low_complexity 1 80 0 2 1177 3262 90 7 16 chr1 77662030 77662470 -119532962 + L1_Mus4 LINE L1 6199 6634 -2 2 1177 196 263 17 17 chr1 77662643 77662701 -119532731 + L2a LINE L2 3062 3119 -307 2 1177 312 233 86 104 chr1 77662783 77662807 -119532625 - B2_Mm2 SINE B2 -15 180 159 2 1177 525 16 0 0 chr1 77662807 77662869 -119532563 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1177 606 233 86 104 chr1 77662869 77663007 -119532425 - B3A SINE B2 -38 160 21 2 1177 34 24 0 0 chr1 77663346 77663387 -119532045 + AT_rich Low_complexity Low_complexity 1 41 0 2 1177 927 104 96 84 chr1 77664033 77664211 -119531221 + RMER1C Other Other 1111 1290 -52 2 1177 2366 111 139 0 chr1 77664218 77664577 -119530855 + IAPLTR2a LTR ERVK 1 409 -2 2 1177 17561 63 31 26 chr1 77664584 77666925 -119528507 + IAPEz-int LTR ERVK 3 2345 -4136 2 1177 394 89 0 0 chr1 77666924 77666980 -119528452 + IAPEz-int LTR ERVK 2719 2774 -3707 2 1177 3189 20 0 0 chr1 77666978 77667335 -119528097 + IAPEz-int LTR ERVK 4001 4357 -2124 2 1177 5775 54 13 7 chr1 77667326 77668092 -119527340 + IAPEz-int LTR ERVK 5709 6479 -2 2 1177 2194 111 139 0 chr1 77668094 77668453 -119526979 + IAPLTR2a LTR ERVK 1 409 -2 2 1177 254 125 0 0 chr1 77668460 77668508 -119526924 + RMER1C Other Other 1295 1342 0 2 1177 253 272 144 10 chr1 77668989 77669091 -119526341 + B4 SINE B4 1 126 -166 2 1177 490 283 28 0 chr1 77669109 77669215 -119526217 + B4 SINE B4 180 288 -4 2 1177 189 379 0 0 chr1 77669451 77669517 -119525915 - MIR3 SINE MIR -30 178 113 2 1177 212 260 0 105 chr1 77669713 77669799 -119525633 - MIRc SINE MIR -18 250 174 2 1177 216 0 0 0 chr1 77670583 77670607 -119524825 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1177 839 89 129 0 chr1 77670611 77670735 -119524697 - B1_Mus2 SINE Alu -7 140 1 2 1177 272 143 0 14 chr1 77671808 77671879 -119523553 + GA-rich Low_complexity Low_complexity 1 70 0 2 1177 183 255 43 0 chr1 77672523 77672570 -119522862 - L2b LINE L2 -5 3370 3322 2 1177 1784 258 71 14 chr1 77672737 77673229 -119522203 - RMER5 LTR ERV1 0 534 15 2 1177 203 380 79 6 chr1 77673627 77673791 -119521641 + MIR SINE MIR 87 262 0 2 1177 413 355 58 15 chr1 77674010 77674216 -119521216 + MER89 LTR ERV1 206 420 -139 2 1177 257 250 29 0 chr1 77674247 77674315 -119521117 + MER89 LTR ERV1 487 556 -3 2 1177 23 0 0 0 chr1 77675438 77675461 -119519971 + AT_rich Low_complexity Low_complexity 1 23 0 2 1177 215 294 0 0 chr1 77676415 77676466 -119518966 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 2 1177 354 332 39 101 chr1 77676827 77676848 -119518584 + B4 SINE B4 76 135 -157 2 1177 884 163 0 14 chr1 77676848 77676991 -119518441 + B1_Mur3 SINE Alu 9 149 0 3 1177 354 332 39 101 chr1 77676991 77677035 -119518397 + B4 SINE B4 136 270 -22 2 1177 680 161 80 74 chr1 77677812 77677987 -119517445 - B2_Mm2 SINE B2 -19 176 1 3 1177 225 381 31 0 chr1 77678030 77678127 -119517305 - MIRc SINE MIR -164 104 5 3 1177 962 54 8 0 chr1 77678560 77678689 -119516743 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 3 1177 404 275 90 15 chr1 77678737 77678870 -119516562 - B4A SINE B4 -149 143 1 3 1177 3548 41 2 2 chr1 77679681 77680118 -119515314 + L1Md_F2 LINE L1 6144 6580 -2 3 1177 230 115 0 19 chr1 77680670 77680723 -119514709 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 1177 504 284 95 117 chr1 77682904 77683291 -119512141 + MLT1D LTR MaLR 13 390 0 3 1177 1023 323 167 2 chr1 77683543 77683956 -119511476 - MLT1F1 LTR MaLR 0 569 89 3 1177 288 256 0 0 chr1 77684027 77684113 -119511319 + G-rich Low_complexity Low_complexity 5 90 0 3 1177 318 358 0 50 chr1 77684296 77684396 -119511036 + PB1 SINE Alu 29 123 -4 3 1177 243 344 86 37 chr1 77684559 77684722 -119510710 - MTEb LTR MaLR -7 372 202 3 1177 391 121 33 49 chr1 77684733 77684855 -119510577 + (CAGAGA)n Simple_repeat Simple_repeat 4 123 0 3 1177 320 351 52 33 chr1 77685427 77685580 -119509852 + MIRm SINE MIR 4 159 -117 3 1177 22 56 0 0 chr1 77685632 77685668 -119509764 + AT_rich Low_complexity Low_complexity 1 36 0 3 1177 995 313 21 0 chr1 77685849 77686092 -119509340 + B4 SINE B4 2 249 -43 3 1177 435 19 0 0 chr1 77686115 77686167 -119509265 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1177 412 286 154 100 chr1 77686203 77686463 -119508969 + MTEa LTR MaLR 51 324 -55 3 1177 751 275 6 0 chr1 77686555 77686737 -119508695 + B3A SINE B2 1 183 -15 3 1177 22 0 0 0 chr1 77686740 77686762 -119508670 + AT_rich Low_complexity Low_complexity 1 22 0 3 1177 1078 305 21 27 chr1 77686807 77687181 -119508251 + MTE2b LTR MaLR 4 375 -4 3 1177 202 270 81 0 chr1 77687869 77687943 -119507489 + L2 LINE L2 1706 1785 -1634 3 1177 29 0 0 0 chr1 77688265 77688294 -119507138 + AT_rich Low_complexity Low_complexity 1 29 0 3 1177 807 328 41 29 chr1 77688347 77688661 -119506771 + MLT1A0 LTR MaLR 1 318 -47 3 1177 1782 233 92 28 chr1 77688657 77689125 -119506307 - RMER13A LTR ERVK -362 498 1 3 1177 305 343 30 55 chr1 77689434 77689610 -119505822 + MIR SINE MIR 68 256 -12 3 1177 807 299 80 84 chr1 77690297 77690820 -119504612 - Charlie1b DNA MER1_type -1 522 2 3 1177 998 96 6 0 chr1 77691057 77691223 -119504209 + (TTTC)n Simple_repeat Simple_repeat 3 169 0 3 1177 567 46 23 11 chr1 77691244 77691332 -119504100 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3 1177 495 0 0 0 chr1 77693485 77693540 -119501892 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1177 815 269 60 52 chr1 77693541 77693634 -119501798 + B4 SINE B4 2 88 -204 3 1177 1287 67 67 0 chr1 77693634 77693813 -119501619 + B2_Mm2 SINE B2 2 192 -3 3 1177 815 269 60 52 chr1 77693813 77693949 -119501483 + B4 SINE B4 89 233 -59 3 1177 413 347 110 72 chr1 77693949 77694213 -119501219 + B4 SINE B4 1 274 -18 3 1177 450 0 0 0 chr1 77694244 77694294 -119501138 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1177 273 119 0 0 chr1 77694294 77694336 -119501096 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1177 242 175 0 0 chr1 77694348 77694388 -119501044 + B4A SINE B4 253 292 0 3 1177 1192 289 33 48 chr1 77694802 77695197 -119500235 + MTE2a LTR MaLR 20 419 0 3 1177 1005 108 7 7 chr1 77695464 77695613 -119499819 - MTB LTR MaLR 0 400 252 3 1177 272 333 114 0 chr1 77696150 77696282 -119499150 + LTR33 LTR ERVL 275 421 -94 3 1177 195 292 108 0 chr1 77696416 77696481 -119498951 - MIRb SINE MIR -77 191 120 3 1177 352 279 161 120 chr1 77696944 77697310 -119498122 - MLT1K LTR MaLR 0 595 215 3 1177 1774 311 33 24 chr1 77697483 77697647 -119497785 + L1MA6 LINE L1 4701 4858 -1022 3 1177 1183 85 11 6 chr1 77697647 77697825 -119497607 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1177 1774 294 45 21 chr1 77697825 77698844 -119496588 + L1MA6 LINE L1 4859 5934 -366 3 1177 395 372 36 14 chr1 77699288 77699569 -119495863 - MER63B DNA AcHobo -44 392 106 3 1177 188 34 0 33 chr1 77701054 77701084 -119494348 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1177 629 316 16 5 chr1 77701086 77701277 -119494155 - MLT1A0 LTR MaLR -41 324 132 3 1177 201 74 0 0 chr1 77701303 77701330 -119494102 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1177 328 305 40 110 chr1 77701330 77701558 -119493874 + ORR1E LTR MaLR 37 248 -111 3 1177 338 195 0 12 chr1 77703449 77703532 -119491900 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1177 387 0 0 0 chr1 77703566 77703609 -119491823 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1177 605 255 84 44 chr1 77703617 77703674 -119491758 - B4A SINE B4 -14 278 217 3 1177 225 0 0 0 chr1 77703674 77703699 -119491733 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 3 1177 605 255 84 44 chr1 77703699 77703867 -119491565 - B4A SINE B4 -76 216 44 3 1177 318 182 0 0 chr1 77703997 77704063 -119491369 + G-rich Low_complexity Low_complexity 6 71 0 3 1177 341 287 75 0 chr1 77704067 77704161 -119491271 - B1F SINE Alu -47 102 2 3 1177 378 0 0 0 chr1 77704599 77704641 -119490791 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1177 198 324 27 48 chr1 77704695 77704841 -119490591 + MIRb SINE MIR 123 265 -3 3 1177 183 80 0 0 chr1 77705568 77705593 -119489839 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1177 22 35 0 0 chr1 77706341 77706370 -119489062 + AT_rich Low_complexity Low_complexity 1 29 0 3 1177 414 0 0 0 chr1 77707504 77707550 -119487882 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1177 1171 36 0 7 chr1 77707552 77707692 -119487740 - B1_Mm SINE Alu -6 141 3 3 1177 827 279 38 65 chr1 77708789 77709050 -119486382 + B4A SINE B4 22 275 -17 3 1177 407 299 188 18 chr1 77709125 77709343 -119486089 + MER46C DNA MER2_type 76 330 -8 3 1177 2698 62 3 16 chr1 77709879 77709907 -119485525 + L1_Mm LINE L1 5446 5470 -413 3 1177 1197 65 0 29 chr1 77709907 77710082 -119485350 - L1Md_F2 LINE L1 -12 6570 6401 3 1177 2698 62 3 16 chr1 77710082 77710432 -119485000 + L1_Mm LINE L1 5471 5819 -64 3 1177 882 170 13 45 chr1 77710634 77710788 -119484644 + B1_Mur1 SINE Alu 1 149 0 3 1177 326 356 15 36 chr1 77711537 77711674 -119483758 + AmnSINE1 SINE SINE 373 506 -69 3 1177 516 233 60 30 chr1 77712394 77712527 -119482905 + B1F SINE Alu 13 149 0 3 1177 413 322 0 45 chr1 77712626 77712782 -119482650 + B1F2 SINE Alu 1 149 0 3 1177 21 57 0 0 chr1 77713171 77713206 -119482226 + AT_rich Low_complexity Low_complexity 1 35 0 3 1177 376 321 162 55 chr1 77714337 77714910 -119480522 - L2a LINE L2 -309 3117 2481 3 1177 1398 146 5 5 chr1 77715134 77715354 -119480078 - URR1A DNA MER1_type -6 220 1 3 1177 231 348 144 29 chr1 77715478 77715617 -119479815 + MER115 DNA Tip100 313 467 -226 3 1177 351 200 89 23 chr1 77716212 77716352 -119479080 + MIRb SINE MIR 121 268 0 3 1177 495 33 0 0 chr1 77717748 77717809 -119477623 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1177 23 0 0 0 chr1 77717876 77717899 -119477533 + AT_rich Low_complexity Low_complexity 1 23 0 3 1177 220 269 243 34 chr1 77718083 77718260 -119477172 - MIRb SINE MIR -15 253 40 3 1177 21 0 0 0 chr1 77719794 77719815 -119475617 + AT_rich Low_complexity Low_complexity 1 21 0 3 1177 571 288 7 35 chr1 77719879 77720023 -119475409 - RSINE1 SINE B4 -23 142 3 3 1177 252 118 0 0 chr1 77720744 77720778 -119474654 + B1_Mus1 SINE Alu 31 64 -84 3 1177 204 67 0 0 chr1 77720939 77720969 -119474463 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1177 537 253 41 35 chr1 77721215 77721387 -119474045 + ORR1E LTR MaLR 25 197 -162 3 1177 2390 95 3 3 chr1 77721441 77721768 -119473664 - ORR1A2 LTR MaLR 0 327 1 3 1177 676 325 35 15 chr1 77721815 77722012 -119473420 - B4A SINE B4 -9 283 83 3 1177 257 226 0 0 chr1 77722266 77722319 -119473113 + B1_Mus2 SINE Alu 72 124 -23 3 1177 250 311 35 58 chr1 77722516 77722690 -119472742 - RLTR15 LTR ERVK -142 217 48 3 1177 283 290 0 55 chr1 77722915 77722988 -119472444 - ID2 SINE ID -13 70 2 3 1177 189 0 0 0 chr1 77723461 77723482 -119471950 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1177 410 313 119 39 chr1 77723618 77723930 -119471502 + ORR1E LTR MaLR 11 347 -12 3 1178 2121 140 18 83 chr1 77726110 77726508 -119468924 - ORR1C1 LTR MaLR -6 372 1 3 1178 215 286 93 23 chr1 77726673 77726759 -119468673 - MIR SINE MIR -88 180 89 3 1178 230 143 0 20 chr1 77726831 77726881 -119468551 + GA-rich Low_complexity Low_complexity 3 51 0 3 1178 231 61 0 0 chr1 77727776 77727809 -119467623 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1178 332 321 44 9 chr1 77728134 77728247 -119467185 + B1F1 SINE Alu 27 143 -6 3 1178 367 247 0 49 chr1 77729813 77729915 -119465517 - MLT1A1 LTR MaLR 0 408 312 3 1178 1224 280 44 35 chr1 77731562 77731992 -119463440 + BGLII_B LTR ERVK 1 434 -7 3 1178 250 277 0 0 chr1 77732397 77732444 -119462988 + B1F SINE Alu 76 122 -27 3 1178 358 335 33 44 chr1 77734026 77734207 -119461225 - ORR1E LTR MaLR -162 197 19 3 1178 367 319 105 14 chr1 77734331 77734474 -119460958 + B3A SINE B2 35 190 -8 3 1178 395 283 78 5 chr1 77734503 77734709 -119460723 - MER112 DNA MER1_type -37 224 4 3 1178 311 301 154 0 chr1 77735871 77736014 -119459418 + Tigger13a DNA MER2_type 45 209 -562 3 1178 302 313 95 0 chr1 77736549 77736696 -119458736 + Tigger13a DNA MER2_type 317 477 -294 3 1178 323 300 0 12 chr1 77736741 77736822 -119458610 - ID4_ SINE ID -3 80 1 3 1178 319 314 38 53 chr1 77736846 77736977 -119458455 - B1F1 SINE Alu -20 129 1 4 1178 1115 92 0 0 chr1 77737068 77737220 -119458212 + B2_Mm2 SINE B2 1 152 -43 4 1178 186 43 0 0 chr1 77737227 77737250 -119458182 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1178 5043 72 3 19 chr1 77737254 77737893 -119457539 + L1Md_F2 LINE L1 5948 6576 -6 4 1178 2749 213 8 2 chr1 77737895 77738408 -119457024 - RMER20A LTR ERVK 0 516 1 4 1178 6536 55 14 3 chr1 77738930 77739710 -119455722 - L1Md_F2 LINE L1 0 6582 5794 4 1178 1848 239 44 15 chr1 77739833 77740312 -119455120 - RLTR16 LTR ERVK -12 493 1 4 1178 747 42 0 0 chr1 77740940 77741035 -119454397 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1178 451 312 12 48 chr1 77741478 77741643 -119453789 + MER5A1 DNA MER1_type 8 166 0 4 1178 536 283 30 65 chr1 77741643 77741669 -119453763 + ID_B1 SINE B4 57 222 -2 4 1178 928 163 7 0 chr1 77741669 77741816 -119453616 + B1_Mur4 SINE Alu 1 148 -2 4 1178 321 47 0 0 chr1 77742615 77742658 -119452774 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1178 1641 71 13 4 chr1 77742745 77742970 -119452462 + L1_Mus3 LINE L1 6412 6638 0 4 1178 988 205 52 38 chr1 77743055 77743268 -119452164 - B3 SINE B2 0 216 1 4 1178 649 255 21 14 chr1 77743672 77743815 -119451617 - RSINE1 SINE B4 -19 146 3 4 1178 245 328 72 82 chr1 77744406 77744768 -119450664 + MLT2B5 LTR ERVL 125 504 -11 4 1178 489 17 0 0 chr1 77745935 77745993 -119449439 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1178 437 0 19 0 chr1 77745993 77746045 -119449387 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1178 447 284 27 9 chr1 77746069 77746179 -119449253 - RSINE1 SINE B4 -41 124 13 4 1178 279 0 0 0 chr1 77746179 77746210 -119449222 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 4 1178 1213 259 23 16 chr1 77746210 77746520 -119448912 - Lx6 LINE L1 -38 7422 7111 4 1178 1243 288 101 67 chr1 77746588 77747458 -119447974 - L1MC3 LINE L1 -788 6997 6098 4 1178 1073 277 34 170 chr1 77747650 77748267 -119447165 - MT2A LTR ERVL 0 533 1 4 1178 419 348 17 80 chr1 77748313 77748488 -119446944 + B4A SINE B4 2 165 -127 4 1178 687 224 73 14 chr1 77748461 77748639 -119446793 + MT2A LTR ERVL 311 601 0 4 1178 2479 197 37 25 chr1 77748776 77749286 -119446146 + RMER20A LTR ERVK 1 516 0 4 1178 324 0 0 0 chr1 77750355 77750391 -119445041 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1178 211 167 24 0 chr1 77753181 77753223 -119442209 + B4 SINE B4 2 44 -248 4 1178 256 277 45 105 chr1 77753340 77753473 -119441959 + RMER15 LTR ERVL 64 188 -387 4 1178 356 339 51 11 chr1 77753491 77753667 -119441765 + RMER15 LTR ERVL 378 560 -15 4 1178 678 288 102 49 chr1 77754068 77754517 -119440915 - L1ME1 LINE L1 -73 6106 5634 4 1178 331 230 63 21 chr1 77754639 77754802 -119440630 - L1ME1 LINE L1 -879 5480 5303 4 1178 555 244 117 62 chr1 77755065 77755244 -119440188 - B4A SINE B4 -91 201 13 4 1178 342 172 0 0 chr1 77756359 77756417 -119439015 - L2a LINE L2 0 3426 3369 4 1178 484 250 6 6 chr1 77756543 77756720 -119438712 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 4 1178 301 92 25 38 chr1 77757014 77757093 -119438339 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 4 1178 4728 70 2 0 chr1 77758461 77759030 -119436402 - L1Md_T LINE L1 -1 6581 6012 4 1178 214 303 38 76 chr1 77759068 77759200 -119436232 + MIRb SINE MIR 111 237 -31 4 1178 684 86 0 0 chr1 77759890 77759995 -119435437 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1178 405 0 0 0 chr1 77759995 77760039 -119435393 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1178 639 295 46 20 chr1 77760261 77760458 -119434974 + B3 SINE B2 2 203 -13 4 1178 285 197 0 0 chr1 77760458 77760524 -119434908 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1178 182 83 56 0 chr1 77760523 77760559 -119434873 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 4 1178 22 35 0 0 chr1 77760619 77760648 -119434784 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 2065 171 11 6 chr1 77760694 77761046 -119434386 - ORR1B2 LTR MaLR -8 359 6 4 1178 477 47 0 0 chr1 77761359 77761423 -119434009 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1178 5348 272 60 19 chr1 77761754 77763719 -119431713 + Lx7 LINE L1 5279 7335 -361 4 1178 234 183 0 62 chr1 77763759 77763823 -119431609 + Lx7 LINE L1 7612 7671 -25 4 1178 389 54 18 0 chr1 77765275 77765331 -119430101 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1178 232 342 13 13 chr1 77766715 77766792 -119428640 + ID4_ SINE ID 2 78 -5 4 1178 206 62 31 0 chr1 77766792 77766824 -119428608 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 4 1178 528 287 14 68 chr1 77766831 77766977 -119428455 + B4 SINE B4 7 144 -148 4 1178 304 0 0 160 chr1 77766978 77767134 -119428298 + (CAGAG)n Simple_repeat Simple_repeat 5 135 0 4 1178 480 219 10 0 chr1 77767137 77767233 -119428199 + B4 SINE B4 127 223 -69 4 1178 339 299 0 0 chr1 77767258 77767335 -119428097 + B4 SINE B4 216 292 0 4 1178 432 0 0 0 chr1 77767818 77767866 -119427566 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1178 279 125 0 0 chr1 77768135 77768175 -119427257 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 4 1178 784 112 6 32 chr1 77768175 77768332 -119427100 + CT-rich Low_complexity Low_complexity 2 154 0 4 1178 800 274 59 49 chr1 77770866 77771154 -119424278 - B4A SINE B4 -1 291 1 4 1178 189 0 0 0 chr1 77771352 77771373 -119424059 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1178 477 0 0 0 chr1 77771688 77771741 -119423691 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1178 714 266 32 7 chr1 77771746 77771901 -119423531 - B3A SINE B2 -38 160 2 4 1178 572 321 98 37 chr1 77771901 77772526 -119422906 - L1MC4a LINE L1 -1924 5958 5296 4 1178 248 372 43 14 chr1 77772621 77772760 -119422672 - Tigger5 DNA MER2_type -2243 163 21 4 1178 852 302 150 45 chr1 77772793 77773365 -119422067 - MLT1F-int LTR MaLR -211 1278 647 4 1178 233 263 65 13 chr1 77773442 77773519 -119421913 - MLT1F-int LTR MaLR -976 513 433 4 1178 608 273 111 0 chr1 77773568 77773740 -119421692 + B4A SINE B4 4 194 -98 4 1178 636 196 0 0 chr1 77773823 77774002 -119421430 + CT-rich Low_complexity Low_complexity 1 179 0 4 1178 285 151 0 0 chr1 77774001 77774054 -119421378 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1178 500 325 149 67 chr1 77775127 77775723 -119419709 - Charlie25 DNA MER1_type -1499 1025 381 4 1178 36 0 0 0 chr1 77775724 77775760 -119419672 + AT_rich Low_complexity Low_complexity 1 36 0 4 1178 2775 151 12 97 chr1 77775760 77776326 -119419106 - Lx3B LINE L1 -1 6972 6455 4 1178 228 306 12 12 chr1 77776391 77776477 -119418955 - Charlie25 DNA MER1_type -2173 351 266 4 1178 379 331 98 33 chr1 77777203 77777356 -119418076 + RSINE1 SINE B4 2 164 -1 4 1178 321 168 46 9 chr1 77777363 77777471 -119417961 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 1178 293 270 18 26 chr1 77777493 77777607 -119417825 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 1178 378 0 0 0 chr1 77777692 77777734 -119417698 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1178 322 277 75 62 chr1 77778093 77778239 -119417193 + MLT1A1 LTR MaLR 257 404 -4 4 1178 411 281 0 0 chr1 77779726 77779815 -119415617 + ID_B1 SINE B4 127 215 -9 4 1178 414 0 0 0 chr1 77779816 77779862 -119415570 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1178 288 209 45 0 chr1 77779992 77780059 -119415373 - Tigger5 DNA MER2_type -135 2271 2202 4 1178 38875 13 1 7 chr1 77780062 77785307 -119410125 + L1Md_A LINE L1 378 5586 -297 4 1178 9407 14 0 0 chr1 77785307 77786302 -119409130 + L1Md_A LINE L1 5587 6581 -1 4 1178 26 50 0 0 chr1 77786341 77786381 -119409051 + AT_rich Low_complexity Low_complexity 1 40 0 4 1178 374 343 84 0 chr1 77786387 77786530 -119408902 - RSINE1 SINE B4 -10 155 1 4 1178 465 302 114 57 chr1 77786546 77786774 -119408658 - Tigger5 DNA MER2_type -2158 248 8 4 1178 648 97 0 0 chr1 77787103 77787196 -119408236 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 4 1178 573 15 0 0 chr1 77788096 77788162 -119407270 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1178 718 282 24 6 chr1 77788171 77788335 -119407097 - B4 SINE B4 -6 286 120 4 1178 200 356 16 41 chr1 77789781 77789904 -119405528 + L2b LINE L2 2982 3101 -274 4 1178 948 302 51 83 chr1 77789936 77790347 -119405085 + MTD LTR MaLR 4 401 -18 4 1178 217 270 47 16 chr1 77790461 77790525 -119404907 + L2b LINE L2 3218 3283 -92 4 1178 2756 171 75 37 chr1 77791083 77791543 -119403889 + RMER1B Other Other 182 931 -135 4 1178 240 35 0 0 chr1 77791543 77791572 -119403860 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 4 1178 2756 165 71 39 chr1 77791572 77791701 -119403731 + RMER1B Other Other 932 1064 -2 4 1178 263 316 21 0 chr1 77792171 77792266 -119403166 - MamRep564 Unknown Unknown -130 227 131 4 1178 1101 130 0 0 chr1 77793075 77793221 -119402211 + B1_Mus1 SINE Alu 2 147 -1 4 1178 1326 78 0 0 chr1 77793221 77793401 -119402031 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1178 7024 35 0 2 chr1 77793562 77794347 -119401085 - L1Md_T LINE L1 0 6582 5800 4 1178 1264 92 0 46 chr1 77794350 77794544 -119400888 - B2_Mm2 SINE B2 -3 192 8 4 1178 934 267 15 0 chr1 77794664 77794866 -119400566 - B3 SINE B2 -11 205 1 4 1178 24 0 0 0 chr1 77795284 77795308 -119400124 + AT_rich Low_complexity Low_complexity 1 24 0 4 1178 575 339 6 6 chr1 77795768 77795934 -119399498 + B4A SINE B4 11 176 -116 4 1178 396 40 0 0 chr1 77796053 77796103 -119399329 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1178 499 306 185 16 chr1 77796147 77796396 -119399036 + B4A SINE B4 2 292 0 4 1178 244 290 13 92 chr1 77796396 77796548 -119398884 - RMER12 LTR ERVK -474 848 709 4 1178 291 208 27 143 chr1 77796535 77796647 -119398785 - B3A SINE B2 -2 214 116 4 1178 1095 69 0 0 chr1 77796678 77796823 -119398609 + (TCTCC)n Simple_repeat Simple_repeat 2 146 0 4 1178 551 268 58 29 chr1 77796888 77797299 -119398133 - L1M4 LINE L1 -593 5587 5163 4 1178 459 0 0 0 chr1 77797315 77797366 -119398066 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1178 568 295 211 0 chr1 77797403 77797640 -119397792 - B4A SINE B4 -5 287 1 4 1178 745 92 48 12 chr1 77798127 77798292 -119397140 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 5 1178 276 306 57 70 chr1 77798832 77798990 -119396442 - L2b LINE L2 -216 3171 3016 5 1178 616 307 19 7 chr1 77798997 77799151 -119396281 + B4A SINE B4 7 162 -130 5 1178 504 32 0 0 chr1 77799167 77799229 -119396203 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1178 879 10 0 0 chr1 77799229 77799328 -119396104 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1178 265 288 0 0 chr1 77799396 77799462 -119395970 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1178 23 68 0 0 chr1 77799567 77799611 -119395821 + AT_rich Low_complexity Low_complexity 1 44 0 5 1178 803 152 17 11 chr1 77801030 77801209 -119394223 + GA-rich Low_complexity Low_complexity 1 180 0 5 1178 47 0 0 32 chr1 77801572 77801613 -119393819 + AT_rich Low_complexity Low_complexity 1 40 0 5 1178 1295 54 0 0 chr1 77801613 77801760 -119393672 - B1_Mm SINE Alu 0 147 1 5 1178 47 0 0 32 chr1 77801760 77801780 -119393652 + AT_rich Low_complexity Low_complexity 1 20 0 5 1178 991 233 21 0 chr1 77801799 77801992 -119393440 + B3 SINE B2 2 198 -18 5 1178 266 318 83 30 chr1 77802437 77802570 -119392862 - MIRc SINE MIR -115 153 14 5 1178 1188 60 13 13 chr1 77802749 77803051 -119392381 + (TAGA)n Simple_repeat Simple_repeat 1 302 0 5 1178 237 370 0 12 chr1 77803084 77803166 -119392266 + ID4_ SINE ID 2 82 -1 5 1178 23 33 0 0 chr1 77804487 77804517 -119390915 + AT_rich Low_complexity Low_complexity 1 30 0 5 1178 198 0 0 0 chr1 77804614 77804636 -119390796 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1178 1450 262 45 11 chr1 77804636 77804991 -119390441 - MTEa LTR MaLR -7 372 6 5 1178 264 299 89 42 chr1 77804993 77805103 -119390329 - L2a LINE L2 -15 3411 3243 5 1178 423 137 0 0 chr1 77805259 77805332 -119390100 + (CAT)n Simple_repeat Simple_repeat 1 73 0 5 1178 614 271 26 26 chr1 77805982 77806137 -119389295 - RSINE1 SINE B4 -10 155 1 5 1178 226 0 59 0 chr1 77806406 77806440 -119388992 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1178 250 333 13 0 chr1 77806991 77807069 -119388363 - ID4 SINE ID -2 81 3 5 1178 278 233 0 62 chr1 77807556 77807620 -119387812 + ID4_ SINE ID 1 60 -23 5 1178 924 143 0 0 chr1 77807620 77807774 -119387658 + (TGGA)n Simple_repeat Simple_repeat 3 156 0 5 1178 22 0 0 0 chr1 77808519 77808541 -119386891 + AT_rich Low_complexity Low_complexity 1 22 0 5 1178 612 156 0 0 chr1 77808655 77808764 -119386668 + GA-rich Low_complexity Low_complexity 1 109 0 5 1178 492 32 0 0 chr1 77809662 77809724 -119385708 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1178 240 339 49 16 chr1 77809855 77809978 -119385454 + MLT1I LTR MaLR 285 411 0 5 1178 469 341 91 23 chr1 77810598 77810817 -119384615 - MLT1J2 LTR MaLR -171 277 44 5 1178 346 317 56 5 chr1 77811442 77811629 -119383803 - MTEb LTR MaLR 0 379 167 5 1178 512 313 88 75 chr1 77811635 77811942 -119383490 - ORR1E LTR MaLR -43 316 6 5 1178 709 316 98 10 chr1 77812385 77812692 -119382740 + L1MC LINE L1 5483 5816 -2066 5 1178 396 0 0 0 chr1 77813265 77813309 -119382123 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1178 180 0 0 0 chr1 77813309 77813328 -119382104 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 1178 216 0 0 0 chr1 77813630 77813654 -119381778 + (CAAAT)n Simple_repeat Simple_repeat 4 27 0 5 1178 7273 175 43 5 chr1 77813949 77815203 -119380229 - Lx9 LINE L1 -8 7636 6335 5 1178 386 227 0 51 chr1 77817124 77817203 -119378229 - B4A SINE B4 -2 290 216 5 1178 413 332 153 39 chr1 77817886 77818305 -119377127 + Tigger13a DNA MER2_type 82 562 -209 5 1178 965 96 15 0 chr1 77818305 77818441 -119376991 + L1_Mus1 LINE L1 6430 6567 0 5 1178 413 332 153 39 chr1 77818441 77818456 -119376976 + Tigger13a DNA MER2_type 563 573 -198 5 1178 954 103 0 0 chr1 77818456 77818601 -119376831 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 5 1178 413 332 153 39 chr1 77818601 77818726 -119376706 + Tigger13a DNA MER2_type 574 706 -65 5 1178 845 250 0 0 chr1 77818918 77819074 -119376358 + B3 SINE B2 1 156 -60 5 1178 303 291 52 37 chr1 77819059 77819266 -119376166 + RMER15 LTR ERVL 320 570 -5 5 1178 761 224 15 11 chr1 77819326 77819517 -119375915 - Lx7 LINE L1 -396 7064 6881 5 1178 750 229 22 0 chr1 77819517 77819700 -119375732 - RCHARR1 DNA MER1_type -13 961 775 5 1178 386 278 84 30 chr1 77819693 77819860 -119375572 - RCHARR1 DNA MER1_type -798 176 1 5 1178 650 247 49 31 chr1 77820276 77820439 -119374993 + MER2 DNA MER2_type 172 337 -8 5 1178 450 0 0 0 chr1 77820662 77820712 -119374720 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1178 999 316 17 17 chr1 77823588 77823878 -119371554 + B4A SINE B4 1 290 -2 5 1178 452 18 0 17 chr1 77823911 77823969 -119371463 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1178 195 330 133 10 chr1 77824235 77824333 -119371099 + L2c LINE L2 3058 3167 -220 5 1178 187 324 121 43 chr1 77824856 77824972 -119370460 + L2c LINE L2 3297 3421 -5 5 1178 226 214 24 0 chr1 77825023 77825107 -119370325 + CT-rich Low_complexity Low_complexity 1 86 0 5 1178 218 289 212 31 chr1 77825265 77825458 -119369974 - MIRb SINE MIR -8 260 33 5 1178 188 59 88 0 chr1 77825570 77825604 -119369828 + L2a LINE L2 3390 3426 0 5 1178 475 321 23 8 chr1 77825805 77825937 -119369495 + B1F SINE Alu 7 140 -9 5 1178 219 139 0 0 chr1 77826030 77826066 -119369366 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1178 3306 271 65 63 chr1 77826097 77826212 -119369220 + Lx8 LINE L1 6318 6408 -1065 5 1178 776 279 30 25 chr1 77826212 77826414 -119369018 - B3 SINE B2 -13 203 1 5 1178 3306 271 65 63 chr1 77826414 77827449 -119367983 + Lx8 LINE L1 6409 7471 -2 5 1178 228 302 35 0 chr1 77827457 77827543 -119367889 + L1M5 LINE L1 5150 5238 -908 5 1178 233 302 45 23 chr1 77827797 77827885 -119367547 - LTR16B LTR ERVL -4 459 370 5 1178 217 374 18 37 chr1 77829006 77829170 -119366262 + MIR3 SINE MIR 16 176 -32 5 1178 665 250 128 21 chr1 77829958 77830146 -119365286 + B3 SINE B2 1 208 -8 5 1178 4507 62 3 6 chr1 77830154 77830827 -119364605 - L1_Mus1 LINE L1 -618 5949 5279 5 1178 5473 66 3 1 chr1 77830827 77831481 -119363951 + L1_Mus1 LINE L1 5913 6567 0 5 1178 207 0 0 0 chr1 77831494 77831517 -119363915 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1178 222 39 0 119 chr1 77832671 77832730 -119362702 + A-rich Low_complexity Low_complexity 2 53 0 5 1178 192 40 0 0 chr1 77833300 77833325 -119362107 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1178 562 276 80 31 chr1 77833421 77833645 -119361787 - MLT1A0 LTR MaLR -130 235 1 5 1178 744 305 115 41 chr1 77833697 77834132 -119361300 + Zaphod DNA Tip100 291 757 -3274 5 1178 1230 48 0 0 chr1 77834133 77834279 -119361153 + B1_Mus2 SINE Alu 2 147 0 5 1178 282 115 25 25 chr1 77834279 77834359 -119361073 + A-rich Low_complexity Low_complexity 5 84 0 5 1178 264 169 64 53 chr1 77834458 77834552 -119360880 + L1MC5 LINE L1 7453 7547 -414 5 1178 1757 111 37 7 chr1 77834630 77834903 -119360529 + ORR1C1 LTR MaLR 98 378 0 5 1178 722 147 50 19 chr1 77834984 77835144 -119360288 + Lx7 LINE L1 7532 7696 0 5 1178 325 302 45 23 chr1 77835204 77835336 -119360096 + MLT2D LTR ERVL 71 205 -209 5 1178 751 315 68 55 chr1 77835739 77836301 -119359131 + Zaphod DNA Tip100 742 1310 -2721 5 1178 461 383 53 24 chr1 77837772 77838149 -119357283 - MARNA DNA Mariner -29 557 170 5 1178 297 0 0 0 chr1 77838160 77838193 -119357239 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 1178 260 343 51 110 chr1 77838712 77838948 -119356484 - LTR33A LTR ERVL -54 466 245 5 1178 804 274 105 8 chr1 77841213 77841470 -119353962 + B4 SINE B4 3 284 -8 5 1178 283 335 18 50 chr1 77842025 77842129 -119353303 + MTEa LTR MaLR 220 323 -56 5 1178 3170 46 5 30 chr1 77842129 77842535 -119352897 + MTA_Mm LTR MaLR 1 396 0 5 1178 283 300 19 57 chr1 77842535 77842594 -119352838 + MTEa LTR MaLR 324 379 0 5 1178 607 298 47 18 chr1 77845427 77845598 -119349834 + ID_B1 SINE B4 1 176 -48 5 1178 601 268 6 44 chr1 77845908 77846027 -119349405 + RSINE1 SINE B4 12 126 -39 5 1178 477 0 0 0 chr1 77846027 77846080 -119349352 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1178 601 268 6 44 chr1 77846080 77846120 -119349312 + RSINE1 SINE B4 127 164 -1 5 1178 512 323 104 0 chr1 77846506 77846698 -119348734 + ID_B1 SINE B4 10 221 -3 5 1178 7523 77 9 16 chr1 77846860 77848271 -119347161 + L1_Mus3 LINE L1 5242 6637 -1 5 1178 207 0 0 0 chr1 77848277 77848300 -119347132 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1178 453 66 0 0 chr1 77849432 77849493 -119345939 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1178 571 340 31 78 chr1 77849548 77849870 -119345562 - ORR1E LTR MaLR -46 313 7 5 1178 409 265 10 20 chr1 77850081 77850181 -119345251 + B3 SINE B2 117 215 -1 5 1178 489 76 0 0 chr1 77851592 77851658 -119343774 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1178 412 295 129 16 chr1 77851659 77851783 -119343649 - RSINE1 SINE B4 -25 140 3 5 1178 360 275 88 35 chr1 77852305 77852418 -119343014 - B1F1 SINE Alu -1 119 1 5 1178 443 197 189 39 chr1 77852567 77852694 -119342738 + B1_Mur4 SINE Alu 5 150 0 5 1178 522 139 0 0 chr1 77852694 77852780 -119342652 + (GGA)n Simple_repeat Simple_repeat 2 87 0 5 1178 772 191 15 7 chr1 77852801 77852938 -119342494 + B1_Mur3 SINE Alu 2 139 -10 5 1178 1046 235 26 34 chr1 77853180 77853444 -119341988 + Lx8 LINE L1 7071 7332 -141 5 1178 280 269 81 9 chr1 77853907 77854017 -119341415 - MIR3 SINE MIR -40 168 58 5 1178 356 229 42 0 chr1 77854249 77854345 -119341087 + L1MB7 LINE L1 5457 5556 -628 5 1178 897 228 62 58 chr1 77854354 77854662 -119340770 + L1MB7 LINE L1 5683 5991 -193 5 1178 22 70 0 0 chr1 77854683 77854726 -119340706 + AT_rich Low_complexity Low_complexity 1 43 0 5 1178 925 303 15 26 chr1 77854784 77855123 -119340309 - Lx8 LINE L1 -110 7363 7029 5 1178 24 32 0 0 chr1 77855151 77855182 -119340250 + AT_rich Low_complexity Low_complexity 1 31 0 5 1178 567 0 0 0 chr1 77855236 77855299 -119340133 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 1178 186 293 0 128 chr1 77856400 77856486 -119338946 - MIRm SINE MIR -6 270 196 6 1179 903 217 18 6 chr1 77857331 77857590 -119337842 + L1_Mur3 LINE L1 3697 3951 -2192 6 1179 637 238 146 31 chr1 77857593 77857631 -119337801 - Lx5 LINE L1 -670 6790 6758 6 1179 369 0 0 0 chr1 77857631 77857672 -119337760 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1179 1673 242 127 26 chr1 77857672 77858178 -119337254 - Lx5 LINE L1 -703 6757 5958 6 1179 3411 34 0 133 chr1 77858178 77858681 -119336751 + RLTR10C LTR ERVK 1 436 0 6 1179 1673 246 117 23 chr1 77858681 77858816 -119336616 - Lx5 LINE L1 -1093 5957 5824 6 1179 4899 231 60 52 chr1 77858813 77860606 -119334826 + L1_Rod LINE L1 3946 5753 -94 6 1179 186 300 124 68 chr1 77861098 77861259 -119334173 - L2a LINE L2 -60 3366 3197 6 1179 405 327 59 24 chr1 77861687 77861856 -119333576 - LTR85b LTR Gypsy? -22 762 588 6 1179 320 0 0 24 chr1 77862011 77862052 -119333380 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1179 785 258 60 5 chr1 77863776 77863975 -119331457 - B3 SINE B2 -6 210 1 6 1179 572 280 104 8 chr1 77864509 77864750 -119330682 + MLT2D LTR ERVL 1 264 -150 6 1179 994 200 31 75 chr1 77864741 77864968 -119330464 - URR1B DNA MER1_type -8 217 1 6 1179 212 301 12 35 chr1 77865085 77865171 -119330261 + CT-rich Low_complexity Low_complexity 3 86 0 6 1179 414 0 0 0 chr1 77865174 77865220 -119330212 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1179 297 0 0 0 chr1 77865358 77865391 -119330041 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1179 751 238 53 16 chr1 77865395 77865583 -119329849 + B3A SINE B2 1 195 -3 6 1179 304 329 0 0 chr1 77866445 77866524 -119328908 + ID4_ SINE ID 5 83 0 6 1179 228 359 10 42 chr1 77866524 77866541 -119328891 + ID_B1 SINE B4 5 97 -127 6 1179 503 316 51 16 chr1 77866541 77866795 -119328637 + Lx8 LINE L1 7210 7472 -1 6 1179 334 255 103 19 chr1 77866941 77867097 -119328335 - RMER15-int LTR ERVL -669 4330 4162 6 1179 1114 271 49 19 chr1 77867229 77867598 -119327834 + Lx8 LINE L1 6731 7110 -363 6 1179 470 369 65 3 chr1 77869467 77869839 -119325593 - Lx8 LINE L1 -39 7434 7040 6 1179 257 227 30 0 chr1 77870471 77870537 -119324895 + CT-rich Low_complexity Low_complexity 3 70 0 6 1179 1359 203 56 102 chr1 77871165 77871559 -119323873 - MTE2a LTR MaLR 0 379 4 6 1179 423 0 0 0 chr1 77873665 77873712 -119321720 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1179 1053 72 0 21 chr1 77874727 77874868 -119320564 + B1_Mus1 SINE Alu 1 138 -10 6 1179 984 18 0 0 chr1 77874868 77874982 -119320450 + (GAA)n Simple_repeat Simple_repeat 2 115 0 6 1179 299 333 66 8 chr1 77875282 77875403 -119320029 - MIRb SINE MIR -47 221 94 6 1179 1026 226 19 14 chr1 77875622 77875833 -119319599 - B3 SINE B2 -4 212 1 6 1179 254 360 60 30 chr1 77876592 77876758 -119318674 - MIRb SINE MIR -88 180 10 6 1179 519 352 51 4 chr1 77877070 77877304 -119318128 + Kanga1a DNA Tc2 67 311 -443 6 1179 22 0 0 0 chr1 77877490 77877512 -119317920 + AT_rich Low_complexity Low_complexity 1 22 0 6 1179 834 153 0 71 chr1 77877518 77877673 -119317759 + B1_Mur4 SINE Alu 2 145 -5 6 1179 372 22 0 0 chr1 77877703 77877748 -119317684 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1179 806 282 194 6 chr1 77877786 77878332 -119317100 + L1MA9 LINE L1 5273 5921 -391 6 1179 251 271 100 0 chr1 77878972 77879112 -119316320 + L1MA4A LINE L1 6023 6176 -127 6 1179 5512 91 9 14 chr1 77879121 77879892 -119315540 + L1Md_F2 LINE L1 5810 6576 -6 6 1179 346 239 68 8 chr1 77879943 77880061 -119315371 + L1MA9 LINE L1 6164 6288 -12 6 1179 5419 34 6 18 chr1 77880135 77880803 -119314629 + L1Md_F3 LINE L1 5925 6584 0 6 1179 193 197 30 0 chr1 77880845 77880911 -119314521 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1179 959 274 38 38 chr1 77880913 77881205 -119314227 - B4A SINE B4 0 292 1 6 1179 21 0 0 0 chr1 77881258 77881279 -119314153 + GC_rich Low_complexity Low_complexity 1 21 0 6 1179 204 40 0 0 chr1 77881361 77881386 -119314046 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 6 1179 357 301 51 34 chr1 77881868 77881985 -119313447 + B1F SINE Alu 18 136 -13 6 1179 448 249 4 14 chr1 77882349 77882451 -119312981 + MTEb LTR MaLR 163 290 -89 6 1179 530 278 22 22 chr1 77882764 77882900 -119312532 + ID_B1 SINE B4 82 217 -7 6 1179 215 255 59 0 chr1 77882856 77882907 -119312525 + PB1D10 SINE Alu 64 117 0 6 1179 192 305 48 12 chr1 77884005 77884088 -119311344 + MIR SINE MIR 123 208 -54 6 1179 287 49 0 24 chr1 77884667 77884709 -119310723 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1179 240 286 36 141 chr1 77884710 77884930 -119310502 + Charlie16a DNA MER1_type 143 339 -3 6 1179 1061 267 43 0 chr1 77885678 77885933 -119309499 + MTE2b LTR MaLR 1 266 -113 6 1179 2748 48 3 8 chr1 77885933 77886294 -119309138 + L1Md_F2 LINE L1 5227 5585 -298 6 1179 7691 58 15 10 chr1 77886295 77887283 -119308149 + L1Md_F2 LINE L1 5587 6579 -3 6 1179 249 237 33 33 chr1 77887284 77887345 -119308087 + MTE2b LTR MaLR 248 308 -71 6 1179 298 194 65 0 chr1 77887386 77887448 -119307984 + MTE2b LTR MaLR 305 370 -9 6 1179 21 0 0 0 chr1 77887567 77887588 -119307844 + AT_rich Low_complexity Low_complexity 1 21 0 6 1179 531 230 30 0 chr1 77887601 77887701 -119307731 + RSINE1 SINE B4 3 105 -60 6 1179 342 311 90 29 chr1 77887804 77888188 -119307244 + L1M2 LINE L1 2165 2566 -4283 6 1179 618 39 0 0 chr1 77888188 77888265 -119307167 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 1179 551 305 92 30 chr1 77888265 77888502 -119306930 + L1M2 LINE L1 2567 2824 -4025 6 1179 1483 297 72 53 chr1 77888558 77889206 -119306226 + L1M2 LINE L1 2885 3550 -3295 6 1179 234 0 0 0 chr1 77889206 77889232 -119306200 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1179 1483 297 72 53 chr1 77889232 77889872 -119305560 + L1M2 LINE L1 3551 4198 -2647 6 1179 806 251 36 25 chr1 77889876 77889942 -119305490 + ID SINE ID 11 78 -146 6 1179 414 338 27 20 chr1 77889942 77890090 -119305342 + B1F SINE Alu 1 149 0 6 1179 279 262 0 48 chr1 77890091 77890175 -119305257 + L1M2 LINE L1 4702 4781 -2064 6 1179 24 0 0 0 chr1 77890865 77890889 -119304543 + AT_rich Low_complexity Low_complexity 1 24 0 6 1179 182 204 17 100 chr1 77892187 77892247 -119303185 + MIRc SINE MIR 44 98 -170 6 1179 227 250 56 67 chr1 77892572 77892662 -119302770 - L1M5 LINE L1 -420 5704 5616 6 1179 300 281 73 0 chr1 77894329 77894425 -119301007 + MER5A1 DNA MER1_type 64 166 0 6 1179 1111 164 0 0 chr1 77894859 77895018 -119300414 - U1 snRNA snRNA -3 162 4 6 1179 1216 67 16 0 chr1 77895023 77895350 -119300082 + (TCTA)n Simple_repeat Simple_repeat 1 332 0 6 1179 525 218 20 8 chr1 77895351 77895475 -119299957 - B1_Mur3 SINE Alu -2 147 26 6 1179 2639 159 112 29 chr1 77896801 77896946 -119298486 - Lx5 LINE L1 -862 6188 6025 6 1179 348 43 0 0 chr1 77896946 77896992 -119298440 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 6 1179 3305 142 64 12 chr1 77896992 77897657 -119297775 - Lx5 LINE L1 -1026 6024 5319 6 1179 945 116 0 0 chr1 77898363 77898509 -119296923 + (TCCC)n Simple_repeat Simple_repeat 3 148 0 6 1179 875 238 131 24 chr1 77898549 77898844 -119296588 + MTD LTR MaLR 37 379 0 6 1179 459 0 0 0 chr1 77899054 77899105 -119296327 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1179 464 300 23 8 chr1 77899115 77899246 -119296186 - RSINE1 SINE B4 -25 140 8 6 1179 196 298 164 8 chr1 77899902 77900024 -119295408 + L2a LINE L2 3138 3278 -148 6 1179 425 306 62 16 chr1 77900097 77900254 -119295178 + B1F SINE Alu 1 148 0 6 1179 23 0 0 0 chr1 77901092 77901115 -119294317 + AT_rich Low_complexity Low_complexity 1 23 0 6 1179 515 395 75 4 chr1 77901687 77901939 -119293493 + LTR16C LTR ERVL 72 341 -148 6 1179 333 0 0 0 chr1 77902115 77902152 -119293280 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1179 679 148 108 8 chr1 77902548 77902677 -119292755 + B1_Mus1 SINE Alu 1 142 -6 6 1179 604 185 0 27 chr1 77902700 77902811 -119292621 + B1_Mur4 SINE Alu 43 150 0 6 1179 890 267 59 31 chr1 77902844 77903130 -119292302 + Lx8 LINE L1 7178 7471 -2 6 1179 230 137 0 56 chr1 77903142 77903196 -119292236 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 6 1179 1942 230 79 12 chr1 77903524 77904017 -119291415 + Lx7 LINE L1 6886 7411 -285 6 1179 3837 176 5 7 chr1 77904039 77904641 -119290791 - Lx2A1 LINE L1 -4 7004 6404 6 1179 7780 54 2 8 chr1 77904697 77905667 -119289765 - L1Md_F2 LINE L1 0 6582 5619 6 1179 6966 64 17 1 chr1 77905664 77906554 -119288878 + L1_Mm LINE L1 4132 5035 -848 6 1179 29 28 0 0 chr1 77906661 77906697 -119288735 + AT_rich Low_complexity Low_complexity 1 36 0 6 1179 3008 165 37 18 chr1 77906825 77907387 -119288045 + Lx9 LINE L1 6945 7517 -127 6 1179 436 216 57 74 chr1 77907396 77907626 -119287806 + Lx9 LINE L1 7419 7644 0 6 1179 225 286 31 16 chr1 77908885 77908949 -119286483 + B4 SINE B4 2 66 -226 6 1179 488 338 39 34 chr1 77909473 77909681 -119285751 + MER20 DNA MER1_type 1 209 -10 6 1179 462 279 21 25 chr1 77909869 77910106 -119285326 - L1MA5A LINE L1 -320 5869 5636 6 1179 518 318 124 39 chr1 77910394 77910783 -119284649 + Lx9 LINE L1 6880 7413 -231 6 1179 234 318 112 15 chr1 77911131 77911265 -119284167 + Lx9 LINE L1 7140 7286 -358 6 1179 527 0 16 0 chr1 77911301 77911364 -119284068 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1179 955 254 122 48 chr1 77911364 77911719 -119283713 + ORR1D2 LTR MaLR 1 375 -9 6 1179 210 361 140 18 chr1 77911822 77912107 -119283325 - L2 LINE L2 -382 3037 2718 6 1179 246 105 0 0 chr1 77912505 77912543 -119282889 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1179 1300 294 113 31 chr1 77912676 77913507 -119281925 - L1MB8 LINE L1 -100 6078 5185 6 1179 25 0 0 0 chr1 77913595 77913620 -119281812 + AT_rich Low_complexity Low_complexity 1 25 0 6 1179 311 268 14 0 chr1 77914214 77914285 -119281147 + ID4_ SINE ID 1 72 -11 6 1179 509 289 136 57 chr1 77914333 77914509 -119280923 + B3A SINE B2 2 191 -7 7 1179 841 250 183 13 chr1 77914923 77915158 -119280274 + B4A SINE B4 3 277 -15 7 1179 411 31 0 44 chr1 77915169 77915237 -119280195 + (CCA)n Simple_repeat Simple_repeat 1 65 0 7 1179 238 396 69 82 chr1 77915422 77915653 -119279779 + MER115 DNA Tip100 29 256 -437 7 1179 571 346 84 52 chr1 77915784 77916071 -119279361 + MER115 DNA Tip100 375 670 -23 7 1179 227 343 56 14 chr1 77916109 77916251 -119279181 - L2a LINE L2 -4 3422 3275 7 1179 549 0 0 0 chr1 77916542 77916603 -119278829 + (TA)n Simple_repeat Simple_repeat 1 61 0 7 1179 925 209 70 14 chr1 77917061 77917275 -119278157 + URR1A DNA MER1_type 1 226 0 7 1179 330 240 36 71 chr1 77917500 77917612 -119277820 + MIRb SINE MIR 74 181 -87 7 1179 449 228 0 88 chr1 77917860 77917985 -119277447 - PB1D10 SINE Alu -2 115 2 7 1179 1008 316 83 25 chr1 77918641 77919197 -119276235 - L1MC1 LINE L1 -273 6060 5473 7 1179 241 316 212 46 chr1 77919243 77919545 -119275887 + MTEb LTR MaLR 2 353 -26 7 1179 225 298 104 12 chr1 77919554 77919727 -119275705 - L1MC1 LINE L1 -772 5374 5186 7 1179 291 191 39 19 chr1 77920189 77920344 -119275088 + (TA)n Simple_repeat Simple_repeat 1 158 0 7 1179 30 27 0 0 chr1 77920658 77920695 -119274737 + AT_rich Low_complexity Low_complexity 1 37 0 7 1179 505 245 28 0 chr1 77921348 77921454 -119273978 + B1_Mur3 SINE Alu 1 109 -40 7 1179 29 60 0 0 chr1 77921464 77921514 -119273918 + AT_rich Low_complexity Low_complexity 1 50 0 7 1179 1009 227 103 0 chr1 77921515 77921757 -119273675 - Lx6 LINE L1 -27 7433 7167 7 1179 429 20 0 0 chr1 77921776 77921826 -119273606 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1179 340 277 92 8 chr1 77923331 77923462 -119271970 + LTR82B Low_complexity ERVL 201 342 -488 7 1179 631 337 42 84 chr1 77923442 77923895 -119271537 + LTR82B Low_complexity ERVL 354 787 -43 7 1179 1176 227 90 11 chr1 77923957 77924224 -119271208 - B4A SINE B4 -4 288 1 7 1179 282 29 0 0 chr1 77924258 77924293 -119271139 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 7 1179 477 0 0 0 chr1 77926105 77926158 -119269274 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1179 207 351 143 26 chr1 77926171 77926437 -119268995 + L2c LINE L2 3090 3386 -1 7 1179 332 292 134 87 chr1 77926833 77927181 -119268251 - LTR33 LTR ERVL -113 402 39 7 1179 700 192 133 67 chr1 77927336 77927531 -119267901 + B3 SINE B2 6 213 -3 7 1179 439 226 28 0 chr1 77927637 77927743 -119267689 - L1M1 LINE L1 -695 5605 5497 7 1179 760 328 113 14 chr1 77928002 77928444 -119266988 + L2 LINE L2 2256 2741 -678 7 1179 228 371 81 19 chr1 77928482 77928691 -119266741 + L2 LINE L2 2861 3082 -337 7 1179 423 250 28 9 chr1 77929050 77929159 -119266273 + B1_Mur2 SINE Alu 36 146 -3 7 1179 392 259 12 0 chr1 77929170 77929251 -119266181 + ID4_ SINE ID 2 83 0 7 1179 746 41 10 0 chr1 77929261 77929359 -119266073 + (GGGA)n Simple_repeat Simple_repeat 4 102 0 7 1179 21 0 0 0 chr1 77929731 77929752 -119265680 + AT_rich Low_complexity Low_complexity 1 21 0 7 1179 310 326 0 11 chr1 77932726 77932816 -119262616 + HERV16-int LTR ERVL 3002 3090 -1906 7 1179 39026 35 1 1 chr1 77933205 77939156 -119256276 - L1Md_T LINE L1 0 6585 437 7 1179 189 74 0 0 chr1 77939942 77939969 -119255463 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1179 601 244 174 114 chr1 77941390 77941654 -119253778 + B4 SINE B4 13 292 0 7 1179 563 185 7 0 chr1 77941655 77941801 -119253631 + (CA)n Simple_repeat Simple_repeat 2 148 0 7 1179 180 0 0 0 chr1 77941975 77941995 -119253437 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1179 382 256 54 22 chr1 77942743 77942835 -119252597 + PB1D7 SINE Alu 25 119 -1 7 1179 353 58 19 0 chr1 77942847 77942899 -119252533 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1179 21 82 0 0 chr1 77942907 77942956 -119252476 + AT_rich Low_complexity Low_complexity 1 49 0 7 1179 197 355 13 0 chr1 77943652 77943728 -119251704 - MIRc SINE MIR -79 189 113 7 1179 189 0 0 0 chr1 77944225 77944246 -119251186 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1179 266 206 0 14 chr1 77944987 77945056 -119250376 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1179 261 0 0 0 chr1 77946281 77946310 -119249122 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1179 736 307 5 5 chr1 77946450 77946666 -119248766 - B3 SINE B2 0 216 1 7 1179 404 330 104 21 chr1 77946718 77947006 -119248426 + L2 LINE L2 2074 2385 -1034 7 1179 22 0 0 0 chr1 77947600 77947622 -119247810 + AT_rich Low_complexity Low_complexity 1 22 0 7 1179 927 229 75 26 chr1 77949417 77949682 -119245750 + L1MA4 LINE L1 5661 5938 -362 7 1179 253 227 45 0 chr1 77949689 77949755 -119245677 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 7 1179 396 0 0 0 chr1 77950080 77950124 -119245308 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1179 253 229 39 91 chr1 77950537 77950614 -119244818 - MER20 DNA MER1_type -52 167 95 7 1179 199 354 57 2 chr1 77951690 77951808 -119243624 - MIRb SINE MIR -67 141 19 7 1179 329 303 58 43 chr1 77952520 77952658 -119242774 + MER2 DNA MER2_type 93 232 -113 7 1179 298 311 66 0 chr1 77952641 77952747 -119242685 + MER2 DNA MER2_type 93 205 -140 7 1179 417 262 48 24 chr1 77952796 77952921 -119242511 - RMER30 DNA MER1_type -73 129 2 7 1179 240 287 110 25 chr1 77953173 77953291 -119242141 - Lx7 LINE L1 -3 7693 7566 7 1179 303 85 0 0 chr1 77953363 77953410 -119242022 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1179 526 295 74 56 chr1 77953489 77953758 -119241674 - B4 SINE B4 -17 275 2 7 1179 243 293 27 0 chr1 77954414 77954489 -119240943 - ID4_ SINE ID -2 81 5 7 1179 204 128 63 13 chr1 77954585 77954664 -119240768 + (TA)n Simple_repeat Simple_repeat 1 83 0 7 1179 687 289 86 37 chr1 77955086 77955330 -119240102 + B4 SINE B4 1 256 -36 7 1179 180 276 17 0 chr1 77955588 77955646 -119239786 - L2 LINE L2 -343 3076 3018 7 1179 627 277 135 9 chr1 77955658 77955990 -119239442 - RMER20B LTR ERVK -1 515 148 7 1179 546 252 16 31 chr1 77956135 77956262 -119239170 - RMER20B LTR ERVK -502 125 1 7 1179 253 360 174 34 chr1 77956266 77956680 -119238752 - L2 LINE L2 -411 3008 2537 7 1179 498 126 0 0 chr1 77957242 77957345 -119238087 + (TG)n Simple_repeat Simple_repeat 1 103 0 7 1179 567 244 217 40 chr1 77957353 77957579 -119237853 - B4A SINE B4 -25 267 2 7 1179 643 329 26 13 chr1 77957585 77957964 -119237468 - L1ME1 LINE L1 -17 6162 5779 7 1179 3213 17 0 0 chr1 77958548 77958908 -119236524 + L1Md_T LINE L1 5227 5586 -297 7 1179 8627 31 0 3 chr1 77958908 77959907 -119235525 + L1Md_T LINE L1 5587 6582 0 7 1179 594 0 0 0 chr1 77960321 77960387 -119235045 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 7 1179 796 312 185 12 chr1 77960412 77960921 -119234511 + MER90a LTR ERV1 2 598 -16 7 1179 16991 151 45 24 chr1 77962425 77964133 -119231299 + L1_Mur3 LINE L1 297 2068 -3812 7 1179 219 69 0 0 chr1 77964133 77964162 -119231270 + (CCA)n Simple_repeat Simple_repeat 3 31 0 7 1179 16991 144 51 52 chr1 77964162 77966483 -119228949 + L1_Mur3 LINE L1 2061 4386 -1491 7 1179 1737 88 73 60 chr1 77966483 77966797 -119228635 - ORR1A3 LTR MaLR -8 318 1 7 1179 16991 144 51 52 chr1 77966797 77967032 -119228400 + L1_Mur3 LINE L1 4387 4623 -1254 7 1179 189 74 0 0 chr1 77967032 77967059 -119228373 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1179 14822 200 40 115 chr1 77967059 77967947 -119227485 + L1_Mur3 LINE L1 4624 5448 -429 7 1179 2734 205 90 46 chr1 77967929 77968587 -119226845 + Lx6 LINE L1 6606 7292 -168 7 1179 339 25 0 0 chr1 77968594 77968634 -119226798 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 7 1179 445 272 12 42 chr1 77969078 77969243 -119226189 + MER5A1 DNA MER1_type 1 160 -6 7 1179 263 179 35 18 chr1 77969284 77969341 -119226091 + ID4_ SINE ID 16 73 -10 7 1179 403 323 76 33 chr1 77969370 77969700 -119225732 - L1MEc LINE L1 -4380 2020 1677 7 1179 467 151 11 0 chr1 77969893 77969986 -119225446 + GA-rich Low_complexity Low_complexity 3 96 0 7 1179 1284 89 0 0 chr1 77969986 77970166 -119225266 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1179 396 0 0 0 chr1 77971299 77971343 -119224089 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1179 539 241 274 14 chr1 77971955 77972178 -119223254 + B4A SINE B4 2 282 -10 7 1179 583 309 20 25 chr1 77973082 77973281 -119222151 + B3A SINE B2 1 198 0 7 1179 242 260 29 59 chr1 77973311 77973413 -119222019 + PB1D7 SINE Alu 22 120 0 7 1179 3171 113 12 52 chr1 77973613 77974156 -119221276 - L1Md_F2 LINE L1 0 6582 6098 7 1179 3871 60 0 2 chr1 77974156 77974806 -119220626 + L1Md_F2 LINE L1 5418 6066 -516 7 1179 464 318 6 13 chr1 77974953 77975109 -119220323 - B3A SINE B2 -4 194 40 7 1179 900 221 15 29 chr1 77976235 77976440 -119218992 + B3 SINE B2 6 207 -9 7 1179 376 270 35 0 chr1 77976581 77976696 -119218736 + PB1D7 SINE Alu 2 120 0 7 1179 277 307 23 0 chr1 77976704 77976792 -119218640 + GA-rich Low_complexity Low_complexity 5 94 0 7 1179 231 127 29 100 chr1 77976974 77977044 -119218388 - Lx LINE L1 -298 6356 6292 7 1179 1492 115 80 8 chr1 77977044 77977306 -119218126 + Lx2 LINE L1 6717 6997 0 7 1179 259 259 0 0 chr1 77977487 77977541 -119217891 - ID4 SINE ID -28 55 2 7 1179 318 242 29 95 chr1 77977550 77977655 -119217777 - PB1 SINE Alu -1 126 29 7 1179 592 122 16 0 chr1 77977886 77978009 -119217423 + (TC)n Simple_repeat Simple_repeat 2 126 0 7 1179 198 0 0 0 chr1 77978514 77978536 -119216896 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 7 1179 23 0 0 0 chr1 77978816 77978839 -119216593 + AT_rich Low_complexity Low_complexity 1 23 0 7 1179 206 0 87 43 chr1 77980212 77980258 -119215174 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 7 1179 525 32 0 0 chr1 77980741 77980804 -119214628 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 7 1179 1123 97 17 0 chr1 77980806 77980981 -119214451 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 7 1179 540 0 0 0 chr1 77980982 77981042 -119214390 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 7 1179 309 288 5 160 chr1 77982091 77982285 -119213147 - RSINE1 SINE B4 0 165 2 7 1179 261 0 0 0 chr1 77982480 77982509 -119212923 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1179 429 307 17 9 chr1 77983198 77983313 -119212119 - Lx8 LINE L1 -237 7236 7121 8 1179 775 90 16 0 chr1 77983335 77983457 -119211975 + (TC)n Simple_repeat Simple_repeat 2 125 0 8 1179 392 171 9 0 chr1 77983475 77983586 -119211846 + GA-rich Low_complexity Low_complexity 1 112 0 8 1179 557 289 100 6 chr1 77983601 77983827 -119211605 - Lx8 LINE L1 -638 7058 6827 8 1179 256 279 74 29 chr1 77984063 77984218 -119211214 - MLT1A0 LTR MaLR 0 408 228 8 1179 319 297 0 0 chr1 77984593 77984721 -119210711 + (TA)n Simple_repeat Simple_repeat 1 128 0 8 1179 180 0 0 0 chr1 77985073 77985093 -119210339 + (TGAG)n Simple_repeat Simple_repeat 3 22 0 8 1179 369 334 30 78 chr1 77985124 77985395 -119210037 + B4 SINE B4 2 257 -35 8 1179 277 141 56 0 chr1 77985421 77985475 -119209957 + GA-rich Low_complexity Low_complexity 4 59 0 8 1179 1231 28 0 53 chr1 77985475 77985664 -119209768 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 8 1179 277 141 56 0 chr1 77985664 77985680 -119209752 + polypurine Low_complexity Low_complexity 60 77 0 8 147 9810 51 1 2 chr1 77986020 77987907 -119207525 - L1Md_F2 LINE L1 -12 6570 4687 8 1180 261 305 46 37 chr1 77987971 77988080 -119207352 - B3A SINE B2 -87 111 2 8 1180 2215 68 3 3 chr1 77988400 77988710 -119206722 + MTB LTR MaLR 1 310 -90 8 1180 428 237 4 14 chr1 77989012 77989117 -119206315 + PB1D10 SINE Alu 10 114 -35 8 1180 1340 231 76 3 chr1 77989464 77989575 -119205857 + MTD LTR MaLR 1 118 -301 8 1180 369 0 0 0 chr1 77989575 77989616 -119205816 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 8 1180 1340 203 266 3 chr1 77989616 77989847 -119205585 + MTD LTR MaLR 119 411 -8 8 1180 1013 271 47 81 chr1 77990196 77990578 -119204854 - MTE2b LTR MaLR -10 369 1 8 1180 837 277 24 107 chr1 77991913 77992295 -119203137 - ORR1E LTR MaLR -5 374 7 8 1180 3675 57 21 6 chr1 77993274 77993748 -119201684 - L1Md_F2 LINE L1 -1 6581 6101 8 1180 834 300 48 51 chr1 77994060 77994352 -119201080 + B4A SINE B4 2 292 0 8 1180 757 144 121 0 chr1 77994529 77994611 -119200821 - B1_Mus1 SINE Alu 0 148 61 8 1180 209 33 33 0 chr1 77994611 77994641 -119200791 + (CCTG)n Simple_repeat Simple_repeat 2 32 0 8 1180 757 144 121 0 chr1 77994641 77994690 -119200742 - B1_Mus1 SINE Alu -88 60 2 8 1180 543 327 6 29 chr1 77995109 77995276 -119200156 + B4A SINE B4 1 163 -129 8 1180 2714 180 68 41 chr1 77995276 77995867 -119199565 + RMER20B LTR ERVK 1 607 -20 8 1180 410 295 23 8 chr1 77995878 77996011 -119199421 + B4A SINE B4 156 290 -2 8 1180 387 0 0 0 chr1 77996037 77996080 -119199352 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1180 262 381 21 35 chr1 77996080 77996224 -119199208 + Charlie1 DNA MER1_type 15 156 -2625 8 1180 457 285 35 0 chr1 77996228 77996372 -119199060 + Charlie1 DNA MER1_type 2103 2251 -530 8 1180 443 278 24 8 chr1 77996375 77996502 -119198930 + B1_Mur1 SINE Alu 13 141 -8 8 1180 218 179 34 51 chr1 77996509 77996568 -119198864 + B1F1 SINE Alu 91 148 -1 8 1180 522 0 0 0 chr1 77996728 77996786 -119198646 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 8 1180 764 176 29 22 chr1 77996786 77996925 -119198507 - B1_Mur3 SINE Alu -9 140 1 8 1180 469 263 102 6 chr1 77997083 77997259 -119198173 + Charlie1 DNA MER1_type 2393 2585 -196 8 1180 1036 115 97 0 chr1 77997508 77997673 -119197759 + B2_Mm2 SINE B2 1 181 -14 8 1180 8123 69 12 7 chr1 77997673 77998797 -119196635 - L1_Mus3 LINE L1 -7 6631 5502 8 1180 207 0 0 0 chr1 77998807 77998830 -119196602 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1180 22 35 0 0 chr1 77998954 77998983 -119196449 + AT_rich Low_complexity Low_complexity 1 29 0 8 1180 578 293 0 84 chr1 77998983 77999162 -119196270 - RSINE1 SINE B4 -1 164 1 8 1180 330 26 0 0 chr1 77999504 77999543 -119195889 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1180 338 333 42 34 chr1 77999755 77999991 -119195441 - MLT1M LTR MaLR -248 424 187 8 1180 207 286 0 0 chr1 78000804 78000881 -119194551 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1180 207 0 0 0 chr1 78000993 78001016 -119194416 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1180 465 283 18 0 chr1 78001575 78001688 -119193744 - PB1D10 SINE Alu -1 116 2 3 1180 800 92 0 16 chr1 78001734 78001855 -119193577 + RLTR15 LTR ERVK 241 359 0 4 1180 248 296 0 0 chr1 78002002 78002056 -119193376 - MLT1L LTR MaLR -218 392 339 5 1180 899 152 6 0 chr1 78002280 78002444 -119192988 + (TA)n Simple_repeat Simple_repeat 1 165 0 6 1180 393 22 0 0 chr1 78004798 78004844 -119190588 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1180 441 156 0 0 chr1 78005245 78005322 -119190110 + T-rich Low_complexity Low_complexity 1 77 0 8 1180 818 117 32 7 chr1 78006281 78006436 -119188996 + GA-rich Low_complexity Low_complexity 4 162 0 9 1180 341 0 68 0 chr1 78006436 78006480 -119188952 + (GAGAA)n Simple_repeat Simple_repeat 3 49 0 1 1180 1234 62 0 14 chr1 78006868 78007016 -119188416 + B1_Mus1 SINE Alu 2 147 -1 1 1180 410 295 9 107 chr1 78007062 78007102 -119188330 - B2_Mm2 SINE B2 0 195 158 1 1180 180 0 0 0 chr1 78007102 78007122 -119188310 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1180 676 267 6 43 chr1 78007122 78007297 -119188135 - B3A SINE B2 -38 157 1 1 1180 1002 269 96 20 chr1 78007393 78007685 -119187747 + ORR1E LTR MaLR 25 338 -21 1 1180 557 269 134 6 chr1 78008023 78008195 -119187237 + MTEb LTR MaLR 173 366 -13 1 1180 1747 145 105 7 chr1 78008753 78009059 -119186373 - ORR1B2 LTR MaLR -31 336 1 1 1180 507 228 11 0 chr1 78009120 78009212 -119186220 + RSINE1 SINE B4 3 95 -70 1 1180 443 301 19 0 chr1 78009601 78009704 -119185728 - PB1D10 SINE Alu -12 105 1 1 1180 327 105 0 0 chr1 78010288 78010345 -119185087 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1180 228 203 0 33 chr1 78010346 78010407 -119185025 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1180 393 231 0 0 chr1 78010410 78010583 -119184849 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1180 289 181 17 17 chr1 78010589 78010707 -119184725 + (CAGA)n Simple_repeat Simple_repeat 3 120 0 2 1180 239 233 17 0 chr1 78010710 78010770 -119184662 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1180 207 269 0 19 chr1 78011451 78011504 -119183928 + CT-rich Low_complexity Low_complexity 6 57 0 2 1180 580 25 63 0 chr1 78011788 78011867 -119183565 - L1Md_T LINE L1 0 6582 6499 2 1180 880 167 0 17 chr1 78012038 78012275 -119183157 + CT-rich Low_complexity Low_complexity 1 233 0 2 1180 231 180 40 0 chr1 78012275 78012325 -119183107 - B1_Mus2 SINE Alu -1 146 95 2 1180 879 271 29 36 chr1 78012409 78012685 -119182747 + B4 SINE B4 5 278 -14 2 1180 360 0 0 0 chr1 78012954 78012994 -119182438 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1180 21 0 0 0 chr1 78015171 78015192 -119180240 + AT_rich Low_complexity Low_complexity 1 21 0 3 1180 241 272 138 13 chr1 78016155 78016353 -119179079 - LTR16E1 LTR ERVL -20 518 256 3 1180 585 273 27 54 chr1 78016455 78016602 -119178830 - RSINE1 SINE B4 0 165 23 3 1180 284 48 47 31 chr1 78016648 78016712 -119178720 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 3 1180 1259 69 0 0 chr1 78016747 78016892 -119178540 + B1_Mus2 SINE Alu 1 145 -2 3 1180 198 91 0 0 chr1 78016898 78016931 -119178501 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 1180 336 111 0 0 chr1 78017096 78017159 -119178273 + (A)n Simple_repeat Simple_repeat 1 63 0 3 1180 691 298 6 11 chr1 78017163 78017343 -119178089 - B3A SINE B2 -18 180 2 3 1180 472 250 0 85 chr1 78019739 78019857 -119175575 + RSINE1 SINE B4 9 116 -49 3 1180 1011 103 189 5 chr1 78020000 78020185 -119175247 - URR1B DNA MER1_type 0 225 7 3 1180 369 0 0 0 chr1 78020250 78020291 -119175141 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1180 381 229 0 0 chr1 78021486 78021591 -119173841 + GA-rich Low_complexity Low_complexity 2 106 0 4 1180 979 324 184 11 chr1 78021727 78022167 -119173265 - MLT1G3 LTR MaLR -70 525 10 4 1180 253 327 119 50 chr1 78022174 78022475 -119172957 - MLT1K LTR MaLR -200 395 1 4 1180 525 286 35 29 chr1 78022679 78022852 -119172580 + MER5A DNA MER1_type 2 175 -14 4 1180 1134 299 48 51 chr1 78022927 78023301 -119172131 - MTEa LTR MaLR -5 374 2 4 1180 249 355 52 23 chr1 78025843 78026016 -119169416 + L2b LINE L2 2974 3151 -224 4 1180 222 118 0 0 chr1 78026096 78026130 -119169302 + (CAG)n Simple_repeat Simple_repeat 2 35 0 4 1180 181 213 43 0 chr1 78026323 78026370 -119169062 + L2a LINE L2 3298 3346 -80 4 1180 1189 272 138 11 chr1 78026700 78027318 -119168114 - L1MB8 LINE L1 -186 5992 5297 4 1180 395 354 20 13 chr1 78027363 78027512 -119167920 - RSINE1 SINE B4 -12 153 4 5 1180 2836 25 0 6 chr1 78028031 78028348 -119167084 - L1Md_F2 LINE L1 -11 6571 6257 5 1180 192 40 0 0 chr1 78028525 78028550 -119166882 + (CG)n Simple_repeat Simple_repeat 1 25 0 5 1180 639 39 0 0 chr1 78028550 78028627 -119166805 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1180 434 101 14 0 chr1 78028666 78028735 -119166697 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 5 1180 191 284 43 43 chr1 78030525 78030595 -119164837 + MIR3 SINE MIR 3 72 -136 5 1180 736 228 12 20 chr1 78030760 78030944 -119164488 - B3A SINE B2 0 216 36 5 1180 298 290 0 41 chr1 78030959 78031056 -119164376 + B3 SINE B2 119 211 -5 5 1180 736 290 102 20 chr1 78031085 78031486 -119163946 + L1MC1 LINE L1 5738 6171 -162 5 1180 2100 166 50 5 chr1 78031688 78032070 -119163362 - RMER1B Other Other -4 1062 664 5 1180 189 0 0 0 chr1 78032155 78032176 -119163256 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 6 1180 366 198 264 13 chr1 78032314 78032473 -119162959 + Lx9 LINE L1 7446 7644 0 6 1180 24 32 0 0 chr1 78032545 78032576 -119162856 + AT_rich Low_complexity Low_complexity 1 31 0 6 1180 1710 245 34 97 chr1 78032966 78033472 -119161960 - RLTR18B LTR ERVK -4 508 35 6 1180 767 282 58 9 chr1 78033654 78033868 -119161564 + ID_B1 SINE B4 3 246 -46 6 1180 459 0 0 0 chr1 78033966 78034017 -119161415 + (TTA)n Simple_repeat Simple_repeat 1 51 0 6 1180 371 256 133 49 chr1 78036285 78036548 -119158884 + L1MC4 LINE L1 7753 8037 -5 6 1180 264 298 12 0 chr1 78036912 78036996 -119158436 + GA-rich Low_complexity Low_complexity 2 86 0 6 1180 627 228 29 81 chr1 78038064 78038236 -119157196 - RSINE1 SINE B4 0 165 3 6 1180 975 273 108 0 chr1 78038607 78038867 -119156565 + B4A SINE B4 1 288 -4 6 1180 486 0 0 0 chr1 78038881 78038935 -119156497 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1180 240 254 17 0 chr1 78039912 78039971 -119155461 + ID4 SINE ID 24 83 0 7 1180 21 0 0 0 chr1 78040164 78040185 -119155247 + AT_rich Low_complexity Low_complexity 1 21 0 7 1180 325 259 17 8 chr1 78041989 78042106 -119153326 + Charlie5 DNA MER1_type 2425 2542 -82 7 1180 210 345 22 33 chr1 78042230 78042320 -119153112 + MIRb SINE MIR 113 201 -67 7 1180 3830 35 35 65 chr1 78042748 78043238 -119152194 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1180 2085 52 1 1 chr1 78043489 78043755 -119151677 + L1Md_T LINE L1 5348 5607 -633 7 1180 8651 51 0 0 chr1 78043755 78044751 -119150681 + L1Md_T LINE L1 5587 6582 0 7 1180 328 290 74 9 chr1 78044927 78045035 -119150397 + MER20 DNA MER1_type 34 148 -71 7 1180 630 0 0 0 chr1 78045106 78045176 -119150256 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7 1180 21 71 0 0 chr1 78046004 78046046 -119149386 + AT_rich Low_complexity Low_complexity 1 42 0 7 1180 225 0 0 0 chr1 78048249 78048274 -119147158 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1180 618 301 7 7 chr1 78048281 78048425 -119147007 - RSINE1 SINE B4 -14 151 8 8 1180 805 253 131 33 chr1 78049303 78049548 -119145884 + B4A SINE B4 1 269 -23 8 1180 519 82 0 0 chr1 78049550 78049623 -119145809 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1180 804 265 45 5 chr1 78049692 78049893 -119145539 + ID_B1 SINE B4 2 210 -14 8 1180 258 105 0 0 chr1 78050163 78050201 -119145231 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 8 1180 786 217 18 65 chr1 78050831 78050999 -119144433 - RSINE1 SINE B4 -4 161 2 8 1180 708 259 144 39 chr1 78051203 78051253 -119144179 - L1MEc LINE L1 -5192 1208 1149 8 1180 1316 47 0 0 chr1 78051253 78051401 -119144031 - B1_Mus1 SINE Alu 0 148 1 8 1180 708 259 144 39 chr1 78051401 78051844 -119143588 - L1MEc LINE L1 -5252 1148 663 8 1180 336 266 108 104 chr1 78052097 78052328 -119143104 - L1MEc LINE L1 -6081 319 88 8 1180 743 213 63 32 chr1 78052352 78052541 -119142891 - B2_Mm2 SINE B2 0 195 1 8 1180 874 244 81 28 chr1 78052667 78052878 -119142554 + B4 SINE B4 22 243 -49 9 1180 282 160 0 0 chr1 78052878 78052928 -119142504 + GA-rich Low_complexity Low_complexity 3 52 0 9 1180 233 254 0 16 chr1 78052965 78053029 -119142403 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 9 1180 1060 219 200 13 chr1 78053123 78053438 -119141994 - ORR1D1 LTR MaLR 0 374 1 9 1180 356 275 128 3 chr1 78053715 78053850 -119141582 - MIRc SINE MIR -49 219 73 9 1180 379 274 131 40 chr1 78053943 78054141 -119141291 + MLT1L LTR MaLR 43 258 -352 9 1180 1477 90 21 0 chr1 78054961 78055149 -119140283 + B2_Mm2 SINE B2 1 192 -3 9 1180 198 103 0 0 chr1 78055373 78055402 -119140030 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1180 225 0 0 0 chr1 78056047 78056072 -119139360 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1180 246 311 63 56 chr1 78058462 78058588 -119136844 + MIRb SINE MIR 102 228 -40 9 1180 180 0 0 0 chr1 78060037 78060057 -119135375 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1180 310 284 112 0 chr1 78060061 78060177 -119135255 + Charlie7 DNA MER1_type 1299 1427 -1185 1 1180 29 47 0 0 chr1 78060229 78060272 -119135160 + AT_rich Low_complexity Low_complexity 1 43 0 1 1180 634 225 46 29 chr1 78060280 78060454 -119134978 + Lx9 LINE L1 7246 7422 -222 1 1180 276 159 191 0 chr1 78060503 78060566 -119134866 + Lx9 LINE L1 7566 7640 -4 1 1180 579 223 30 15 chr1 78061207 78061339 -119134093 - ID_B1 SINE B4 -8 216 83 1 1180 351 309 140 22 chr1 78061374 78061602 -119133830 + Charlie7 DNA MER1_type 2019 2273 -339 1 1180 219 88 0 0 chr1 78061762 78061796 -119133636 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1180 268 330 9 19 chr1 78062135 78062243 -119133189 + MER5A DNA MER1_type 44 150 -39 1 1180 224 310 34 11 chr1 78063844 78063932 -119131500 + MIR SINE MIR 15 104 -164 1 1180 753 200 0 45 chr1 78064239 78064354 -119131078 + B3A SINE B2 2 110 -88 1 1180 1334 156 9 18 chr1 78064354 78064582 -119130850 + URR1A DNA MER1_type 1 226 0 1 1180 753 200 0 45 chr1 78064582 78064623 -119130809 + B3A SINE B2 111 151 -47 1 1180 402 282 78 11 chr1 78065249 78065428 -119130004 + MER58D DNA MER1_type 40 230 -156 1 1180 180 0 0 0 chr1 78065970 78065990 -119129442 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1180 217 209 15 15 chr1 78066724 78066792 -119128640 + CT-rich Low_complexity Low_complexity 2 69 0 1 1180 291 244 23 47 chr1 78067413 78067499 -119127933 - B3A SINE B2 -113 85 2 1 1180 910 268 25 18 chr1 78067629 78067910 -119127522 - B4 SINE B4 -9 283 1 1 1180 1069 160 78 20 chr1 78068029 78068233 -119127199 + B3 SINE B2 1 216 0 1 1180 1240 258 29 51 chr1 78068367 78068780 -119126652 - MTD LTR MaLR -14 405 2 1 1180 483 308 0 23 chr1 78069714 78069847 -119125585 + B1F SINE Alu 2 131 -18 1 1180 371 200 52 3 chr1 78070317 78070427 -119125005 + RMER4B LTR ERVK 208 332 -134 1 1180 553 223 6 6 chr1 78070430 78070597 -119124835 + GA-rich Low_complexity Low_complexity 2 168 0 1 1180 1058 124 143 5 chr1 78070597 78070800 -119124632 + RMER4B LTR ERVK 343 573 -12 1 1180 223 167 95 0 chr1 78071070 78071112 -119124320 + RSINE1 SINE B4 80 125 -40 1 1180 441 0 0 0 chr1 78071130 78071179 -119124253 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1180 906 116 0 0 chr1 78071670 78071808 -119123624 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 1 1180 322 255 54 54 chr1 78073138 78073250 -119122182 - RSINE1 SINE B4 -51 114 3 1 1180 239 372 39 8 chr1 78073613 78073743 -119121689 + L2a LINE L2 3286 3419 -7 1 1180 22 35 0 0 chr1 78073758 78073787 -119121645 + AT_rich Low_complexity Low_complexity 1 29 0 1 1180 218 140 56 9 chr1 78073797 78073849 -119121583 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1180 3129 75 10 2 chr1 78073849 78074253 -119121179 + MTB_Mm LTR MaLR 1 407 0 1 1180 218 140 56 9 chr1 78074253 78074308 -119121124 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1180 22 0 0 0 chr1 78074418 78074440 -119120992 + AT_rich Low_complexity Low_complexity 1 22 0 1 1180 543 31 0 0 chr1 78074762 78074827 -119120605 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1180 7939 83 16 3 chr1 78074835 78076152 -119119280 - L1_Mus4 LINE L1 0 6636 5302 1 1180 480 300 117 24 chr1 78076152 78076357 -119119075 - MLT1A0 LTR MaLR -131 234 11 1 1180 21 0 0 0 chr1 78076398 78076419 -119119013 + AT_rich Low_complexity Low_complexity 1 21 0 1 1180 288 77 0 0 chr1 78077511 78077550 -119117882 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1180 204 40 0 0 chr1 78079850 78079875 -119115557 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1180 760 79 48 18 chr1 78080191 78080359 -119115073 + (TG)n Simple_repeat Simple_repeat 1 173 0 1 1180 421 85 76 21 chr1 78080378 78080522 -119114910 + (TG)n Simple_repeat Simple_repeat 2 153 0 1 1180 5464 30 0 0 chr1 78081250 78081879 -119113553 + L1Md_T LINE L1 5953 6581 -1 1 1180 212 346 0 0 chr1 78082679 78082757 -119112675 + ID4_ SINE ID 2 79 -4 1 1180 244 315 55 80 chr1 78083036 78083236 -119112196 - L2 LINE L2 -610 2809 2615 1 1180 229 257 41 66 chr1 78083570 78083691 -119111741 + Charlie9 DNA MER1_type 1 118 -2639 1 1180 360 0 0 0 chr1 78083983 78084023 -119111409 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1180 696 211 37 37 chr1 78084192 78084379 -119111053 + B3A SINE B2 4 190 -8 1 1180 289 288 62 35 chr1 78084575 78084719 -119110713 - MIRb SINE MIR -108 160 13 1 1180 732 262 11 43 chr1 78085683 78085850 -119109582 + B3A SINE B2 1 163 -35 1 1180 495 0 0 0 chr1 78085850 78085905 -119109527 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 1180 732 262 11 43 chr1 78085905 78085924 -119109508 + B3A SINE B2 164 181 -17 1 1180 213 333 0 13 chr1 78087851 78087930 -119107502 + L2 LINE L2 2824 2901 -518 1 1180 367 205 0 25 chr1 78089259 78089339 -119106093 - MTEa LTR MaLR -9 370 293 1 1180 447 255 181 5 chr1 78089345 78089538 -119105894 - MTD LTR MaLR 0 419 193 1 1180 2049 182 59 0 chr1 78089538 78089927 -119105505 - RMER1B Other Other -11 1055 644 1 1180 260 342 8 77 chr1 78090057 78090187 -119105245 - MTD LTR MaLR -244 126 6 1 1180 876 256 92 22 chr1 78090763 78091035 -119104397 + B4A SINE B4 2 292 0 1 1180 235 222 19 0 chr1 78091037 78091091 -119104341 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1180 314 259 129 0 chr1 78091241 78091357 -119104075 - B1F SINE Alu -7 142 12 1 1180 257 333 55 48 chr1 78091414 78091726 -119103706 - MamRep434 DNA TcMar -75 351 38 1 1180 240 258 99 116 chr1 78092485 78092652 -119102780 + LTR33 LTR ERVL 39 212 -303 1 1180 854 194 159 16 chr1 78092695 78092884 -119102548 - B3 SINE B2 0 216 1 1 1180 387 0 0 0 chr1 78093097 78093140 -119102292 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1180 243 62 14 123 chr1 78093150 78093223 -119102209 + (TTG)n Simple_repeat Simple_repeat 2 66 0 1 1180 312 27 0 0 chr1 78093570 78093607 -119101825 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1180 209 321 49 0 chr1 78094319 78094400 -119101032 + L2c LINE L2 3286 3370 -17 1 1180 474 18 0 0 chr1 78094972 78095027 -119100405 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1180 1433 70 38 0 chr1 78095567 78095753 -119099679 - B2_Mm2 SINE B2 -1 194 2 1 1180 300 127 0 0 chr1 78095979 78096034 -119099398 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1180 203 398 23 15 chr1 78096734 78096864 -119098568 + MIRb SINE MIR 61 191 -77 1 1180 23 0 0 0 chr1 78096910 78096933 -119098499 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 276 350 0 39 chr1 78097077 78097181 -119098251 + MER3 DNA MER1_type 5 104 -105 1 1180 324 0 0 0 chr1 78098983 78099019 -119096413 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1180 261 0 0 0 chr1 78099019 78099047 -119096385 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1180 213 218 0 0 chr1 78099258 78099313 -119096119 + T-rich Low_complexity Low_complexity 1 55 0 1 1180 211 148 36 18 chr1 78100352 78100407 -119095025 + GA-rich Low_complexity Low_complexity 4 59 0 1 1180 405 0 0 0 chr1 78100541 78100586 -119094846 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1180 290 271 16 0 chr1 78100671 78100793 -119094639 + (TATG)n Simple_repeat Simple_repeat 4 127 0 1 1180 23 0 0 0 chr1 78100816 78100839 -119094593 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 424 268 0 0 chr1 78101129 78101226 -119094206 + PB1D7 SINE Alu 23 119 -1 1 1180 1257 171 23 0 chr1 78102164 78102381 -119093051 - URR1A DNA MER1_type -4 222 1 1 1180 860 142 7 28 chr1 78102888 78103033 -119092399 - B1_Mur2 SINE Alu 0 149 8 1 1180 668 210 27 27 chr1 78103235 78103382 -119092050 + B1_Mur1 SINE Alu 2 148 -1 1 1180 275 333 0 0 chr1 78103597 78103687 -119091745 + PB1D10 SINE Alu 22 111 -6 1 1180 939 144 14 3 chr1 78103699 78103992 -119091440 + GA-rich Low_complexity Low_complexity 1 295 0 1 1180 500 233 22 37 chr1 78104786 78104920 -119090512 - RSINE1 SINE B4 0 165 34 1 1180 210 154 0 0 chr1 78105327 78105366 -119090066 + A-rich Low_complexity Low_complexity 1 39 0 1 1180 225 0 0 0 chr1 78106126 78106151 -119089281 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1 1180 411 238 0 0 chr1 78106438 78106518 -119088914 - ID4 SINE ID -1 82 3 1 1180 198 0 0 0 chr1 78108337 78108359 -119087073 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 1180 970 314 7 31 chr1 78108405 78108694 -119086738 - B4A SINE B4 0 292 11 1 1180 239 198 240 0 chr1 78108728 78108845 -119086587 + L1MA5 LINE L1 5868 6013 -284 1 1180 366 207 23 0 chr1 78109020 78109107 -119086325 + L1MA5 LINE L1 6177 6265 -35 1 1180 180 0 0 0 chr1 78111623 78111643 -119083789 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1180 763 265 49 69 chr1 78111782 78112086 -119083346 - MER121 Unknown Unknown -113 299 2 1 1180 442 296 26 9 chr1 78113001 78113117 -119082315 + PB1D7 SINE Alu 1 118 -2 1 1180 4462 181 96 56 chr1 78113470 78113956 -119081476 + RLTR25A LTR ERVK 1 515 -588 1 1180 216 0 0 0 chr1 78113956 78113980 -119081452 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1180 4462 181 96 56 chr1 78113980 78114553 -119080879 + RLTR25A LTR ERVK 516 1103 0 1 1180 1100 205 28 14 chr1 78114667 78114880 -119080552 + B3 SINE B2 1 216 0 1 1180 26 0 0 0 chr1 78114918 78114944 -119080488 + AT_rich Low_complexity Low_complexity 1 26 0 1 1180 786 45 259 0 chr1 78116074 78116186 -119079246 + B1_Mm SINE Alu 2 142 -5 1 1180 520 235 92 0 chr1 78116199 78116318 -119079114 + B3 SINE B2 1 130 -86 1 1180 910 67 22 0 chr1 78116378 78116512 -119078920 + (GAAA)n Simple_repeat Simple_repeat 1 137 0 1 1180 234 270 0 0 chr1 78117601 78117675 -119077757 + CT-rich Low_complexity Low_complexity 6 79 0 1 1180 201 196 20 0 chr1 78117781 78117832 -119077600 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 1181 1339 182 0 18 chr1 78119823 78120052 -119075380 - URR1B DNA MER1_type 0 225 1 1 1181 200 56 83 0 chr1 78120636 78120672 -119074760 + (GGGGA)n Simple_repeat Simple_repeat 3 41 0 1 1181 638 198 0 0 chr1 78120933 78121044 -119074388 - RSINE1 SINE B4 -53 112 2 2 1181 284 348 128 17 chr1 78121447 78121681 -119073751 + LTR86C LTR ERVL 336 595 -26 2 1181 614 181 63 0 chr1 78121957 78122084 -119073348 + RMER1C Other Other 1208 1342 0 2 1181 240 308 51 13 chr1 78122094 78122173 -119073259 + ID4_ SINE ID 1 82 -1 2 1181 995 203 45 0 chr1 78122771 78122973 -119072459 + B3 SINE B2 1 211 -5 2 1181 267 376 88 0 chr1 78123666 78123860 -119071572 + MIR SINE MIR 50 260 -2 2 1181 878 224 43 10 chr1 78124732 78124939 -119070493 - B3 SINE B2 -2 214 1 2 1181 212 100 25 0 chr1 78125020 78125060 -119070372 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1181 677 23 23 0 chr1 78125163 78125249 -119070183 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 2 1181 641 47 0 12 chr1 78126780 78126866 -119068566 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 2 1181 453 19 0 0 chr1 78126866 78126920 -119068512 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1181 279 0 0 0 chr1 78127053 78127084 -119068348 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2 1181 519 252 9 9 chr1 78127572 78127688 -119067744 + RSINE1 SINE B4 11 126 -39 2 1181 37 23 0 0 chr1 78127701 78127745 -119067687 + AT_rich Low_complexity Low_complexity 1 44 0 2 1181 1269 205 138 14 chr1 78127753 78128109 -119067323 - MTD LTR MaLR -2 417 18 2 1181 273 305 44 44 chr1 78128266 78128448 -119066984 + MIR SINE MIR 79 260 -2 2 1181 450 227 0 0 chr1 78129311 78129408 -119066024 - PB1D10 SINE Alu -20 97 1 2 1181 37 86 0 0 chr1 78129506 78129599 -119065833 + AT_rich Low_complexity Low_complexity 1 93 0 2 1181 405 256 119 19 chr1 78129841 78130000 -119065432 - MER45A DNA Tip100 -2 176 2 2 1181 214 147 14 14 chr1 78130169 78130238 -119065194 + T-rich Low_complexity Low_complexity 2 70 0 2 1181 797 124 47 0 chr1 78130244 78130373 -119065059 - B1_Mur4 SINE Alu -7 143 9 2 1181 354 268 76 42 chr1 78130887 78131031 -119064401 + RSINE1 SINE B4 2 150 -15 2 1181 252 0 0 0 chr1 78131044 78131072 -119064360 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1181 462 308 21 7 chr1 78131158 78131302 -119064130 - B1F1 SINE Alu -2 147 2 2 1181 432 247 0 0 chr1 78131414 78131507 -119063925 - RSINE1 SINE B4 -27 138 46 2 1181 263 152 0 0 chr1 78132509 78132555 -119062877 + L2b LINE L2 3326 3371 -4 2 1181 372 88 0 0 chr1 78132764 78132821 -119062611 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1181 427 107 12 12 chr1 78133483 78133568 -119061864 + (TCC)n Simple_repeat Simple_repeat 1 85 0 2 1181 198 103 0 0 chr1 78133999 78134028 -119061404 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1181 261 221 0 0 chr1 78134178 78134246 -119061186 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1181 324 0 0 0 chr1 78134490 78134526 -119060906 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2 1181 201 156 0 0 chr1 78134857 78134889 -119060543 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2 1181 273 57 0 0 chr1 78136251 78136286 -119059146 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 1181 477 97 0 0 chr1 78136930 78137002 -119058430 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1181 504 0 0 0 chr1 78137861 78137917 -119057515 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1181 25 31 0 0 chr1 78137996 78138028 -119057404 + AT_rich Low_complexity Low_complexity 1 32 0 2 1181 273 29 0 0 chr1 78139783 78139817 -119055615 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1181 22 35 0 0 chr1 78141972 78142001 -119053431 + AT_rich Low_complexity Low_complexity 1 29 0 2 1181 368 238 6 17 chr1 78142353 78142529 -119052903 + GA-rich Low_complexity Low_complexity 1 173 0 2 1181 492 119 18 9 chr1 78144086 78144196 -119051236 + (CA)n Simple_repeat Simple_repeat 1 111 0 2 1181 21 36 0 0 chr1 78144532 78144560 -119050872 + AT_rich Low_complexity Low_complexity 1 28 0 2 1181 266 148 24 36 chr1 78144848 78144932 -119050500 + CT-rich Low_complexity Low_complexity 4 86 0 2 1181 511 252 76 0 chr1 78145621 78145752 -119049680 + ID_B1 SINE B4 84 224 0 2 1181 396 0 0 0 chr1 78146107 78146151 -119049281 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1181 728 256 41 5 chr1 78146436 78146632 -119048800 - B3 SINE B2 -12 204 2 2 1181 255 61 0 0 chr1 78147086 78147119 -119048313 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1181 275 359 56 19 chr1 78148289 78148451 -119046981 + MER58B DNA MER1_type 165 332 -9 2 1181 533 333 13 13 chr1 78150433 78150588 -119044844 - RSINE1 SINE B4 -9 156 2 2 1181 1038 63 0 0 chr1 78150947 78151089 -119044343 + B1_Mus1 SINE Alu 7 148 0 2 1181 404 220 45 96 chr1 78150955 78151111 -119044321 + B4A SINE B4 99 246 -46 2 1181 793 181 18 0 chr1 78151111 78151282 -119044150 + GA-rich Low_complexity Low_complexity 3 176 0 2 1181 662 148 0 18 chr1 78151313 78151423 -119044009 + PB1D9 SINE Alu 5 112 -8 2 1181 878 119 0 7 chr1 78151423 78151567 -119043865 + (GGAA)n Simple_repeat Simple_repeat 3 145 0 2 1181 201 178 0 0 chr1 78151576 78151621 -119043811 + GA-rich Low_complexity Low_complexity 2 46 0 2 1181 526 101 182 0 chr1 78152347 78152446 -119042986 - B1_Mur4 SINE Alu 0 150 34 2 1181 734 165 23 0 chr1 78152701 78152834 -119042598 + B1_Mur4 SINE Alu 10 145 -5 2 1181 708 12 0 0 chr1 78152847 78152928 -119042504 + (TTA)n Simple_repeat Simple_repeat 2 82 0 2 1181 325 111 19 0 chr1 78152936 78152990 -119042442 + B1_Mur4 SINE Alu 90 144 -6 2 1181 280 265 63 0 chr1 78153707 78153817 -119041615 + MIRb SINE MIR 88 210 -58 2 1181 24 0 0 0 chr1 78153868 78153892 -119041540 + AT_rich Low_complexity Low_complexity 1 24 0 2 1181 26 0 0 0 chr1 78153925 78153951 -119041481 + AT_rich Low_complexity Low_complexity 1 26 0 2 1181 189 0 0 0 chr1 78154399 78154420 -119041012 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1181 492 18 0 0 chr1 78154420 78154476 -119040956 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1181 990 144 0 7 chr1 78155303 78155450 -119039982 + B1_Mus2 SINE Alu 1 146 -1 2 1181 213 39 0 0 chr1 78155557 78155583 -119039849 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1181 683 220 21 7 chr1 78156730 78156872 -119038560 + RSINE1 SINE B4 2 145 -20 2 1181 248 209 43 32 chr1 78156968 78157062 -119038370 + L1MD2 LINE L1 4611 4705 -1441 2 1181 326 250 36 0 chr1 78157064 78157148 -119038284 + B4A SINE B4 2 88 -204 2 1181 189 0 0 0 chr1 78157148 78157169 -119038263 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 1181 423 0 0 0 chr1 78157224 78157271 -119038161 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1181 279 343 14 42 chr1 78157317 78157460 -119037972 + L1MC LINE L1 4808 4946 -1200 2 1181 210 167 0 0 chr1 78157746 78157782 -119037650 - RSINE1 SINE B4 -126 39 4 2 1181 291 316 26 0 chr1 78157796 78157913 -119037519 + L1MD2 LINE L1 5183 5302 -844 2 1181 251 303 124 0 chr1 78157934 78158023 -119037409 + PB1 SINE Alu 3 102 -25 2 1181 583 242 0 0 chr1 78157954 78158074 -119037358 + ID_B1 SINE B4 104 223 -1 2 1181 200 132 0 26 chr1 78158074 78158113 -119037319 + A-rich Low_complexity Low_complexity 1 38 0 2 1181 427 364 43 30 chr1 78158396 78158699 -119036733 + L1MD2 LINE L1 5660 5966 -393 2 1181 589 237 119 43 chr1 78158810 78159088 -119036344 + L1MB7 LINE L1 5660 5958 -226 2 1181 225 336 42 17 chr1 78159108 78159226 -119036206 + L1MB7 LINE L1 6003 6123 -51 2 1181 461 246 197 27 chr1 78159234 78159422 -119036010 - ID_B1 SINE B4 0 224 5 2 1181 22 35 0 0 chr1 78159683 78159712 -119035720 + AT_rich Low_complexity Low_complexity 1 29 0 2 1181 266 299 0 13 chr1 78159786 78159864 -119035568 + ID4 SINE ID 3 79 -4 2 1181 422 285 138 7 chr1 78160946 78161091 -119034341 + RSINE1 SINE B4 2 165 0 2 1181 424 266 91 42 chr1 78161246 78161411 -119034021 - Arthur1C DNA Tip100 -190 173 1 2 1181 317 257 0 26 chr1 78162507 78162583 -119032849 + ID4_ SINE ID 3 76 -7 2 1181 780 93 0 25 chr1 78162707 78162828 -119032604 + B1_Mur2 SINE Alu 9 126 -23 2 1181 186 43 0 0 chr1 78162833 78162856 -119032576 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 2 1181 225 0 0 0 chr1 78163355 78163380 -119032052 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1181 234 107 17 35 chr1 78165289 78165347 -119030085 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2 1181 182 37 37 0 chr1 78165849 78165876 -119029556 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1181 1004 227 28 5 chr1 78166882 78167099 -119028333 - ID_B1 SINE B4 0 224 3 2 1181 450 0 0 0 chr1 78169948 78169998 -119025434 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 2 1181 216 97 0 0 chr1 78170582 78170613 -119024819 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 1181 322 232 24 24 chr1 78171323 78171407 -119024025 + L1MEg LINE L1 1882 1965 -4119 2 1181 357 24 0 0 chr1 78171695 78171737 -119023695 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 2 1181 290 341 65 22 chr1 78172775 78172913 -119022519 - Arthur1B DNA Tip100 -1081 144 1 2 1181 751 241 109 10 chr1 78172913 78173114 -119022318 + ID_B1 SINE B4 1 221 -3 2 1181 344 266 70 44 chr1 78173364 78173478 -119021954 + ID_B1 SINE B4 11 127 -97 2 1181 1652 42 0 0 chr1 78174451 78174644 -119020788 + B2_Mm1a SINE B2 1 193 0 2 1181 687 274 104 41 chr1 78175700 78175768 -119019664 + B4 SINE B4 6 72 -220 2 1181 570 29 0 0 chr1 78175768 78175836 -119019596 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1181 687 274 104 41 chr1 78175836 78176037 -119019395 + B4 SINE B4 73 292 0 2 1181 486 79 0 0 chr1 78176066 78176142 -119019290 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1181 720 256 78 34 chr1 78176174 78176380 -119019052 + B3 SINE B2 2 216 0 2 1181 182 292 107 66 chr1 78176664 78176785 -119018647 - MIRm SINE MIR -129 147 22 3 1181 435 123 0 0 chr1 78178815 78178896 -119016536 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 3 1181 216 0 0 0 chr1 78179463 78179487 -119015945 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1181 204 125 0 0 chr1 78181164 78181196 -119014236 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1181 261 196 0 19 chr1 78181328 78181380 -119014052 - U2 snRNA snRNA -137 51 1 3 1181 954 177 69 37 chr1 78181400 78181617 -119013815 + URR1B DNA MER1_type 2 225 0 3 1181 1302 164 4 66 chr1 78181876 78182035 -119013397 + URR1B DNA MER1_type 1 156 -69 3 1181 1315 83 44 0 chr1 78182035 78182215 -119013217 + B2_Mm2 SINE B2 1 188 -7 3 1181 1302 164 4 66 chr1 78182215 78182296 -119013136 + URR1B DNA MER1_type 157 225 0 3 1181 23 54 0 0 chr1 78182864 78182901 -119012531 + AT_rich Low_complexity Low_complexity 1 37 0 3 1181 252 120 0 0 chr1 78183276 78183326 -119012106 + (T)n Simple_repeat Simple_repeat 1 50 0 3 1181 26 0 0 0 chr1 78183768 78183794 -119011638 + AT_rich Low_complexity Low_complexity 1 26 0 3 1181 408 40 0 0 chr1 78184805 78184855 -119010577 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1181 22 70 0 0 chr1 78185278 78185321 -119010111 + AT_rich Low_complexity Low_complexity 1 43 0 3 1181 309 129 43 0 chr1 78185850 78185920 -119009512 + GA-rich Low_complexity Low_complexity 1 73 0 3 1181 204 219 0 24 chr1 78186047 78186089 -119009343 + polypurine Low_complexity Low_complexity 6 46 0 3 1181 22 56 0 0 chr1 78186242 78186278 -119009154 + GC_rich Low_complexity Low_complexity 1 36 0 3 1181 450 0 0 0 chr1 78187048 78187098 -119008334 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1181 387 0 0 0 chr1 78190793 78190836 -119004596 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1181 297 0 0 0 chr1 78191106 78191139 -119004293 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1181 333 0 0 0 chr1 78191326 78191363 -119004069 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1181 489 17 0 0 chr1 78191648 78191706 -119003726 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1181 414 0 0 0 chr1 78196548 78196594 -118998838 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1181 206 250 50 0 chr1 78197398 78197458 -118997974 + A-rich Low_complexity Low_complexity 1 63 0 3 1181 27 29 0 0 chr1 78197579 78197613 -118997819 + AT_rich Low_complexity Low_complexity 1 34 0 3 1181 21 0 0 0 chr1 78197725 78197746 -118997686 + GC_rich Low_complexity Low_complexity 1 21 0 3 1181 582 15 0 0 chr1 78198943 78199010 -118996422 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1181 182 118 29 0 chr1 78201188 78201222 -118994210 + (TGGGGG)n Simple_repeat Simple_repeat 3 37 0 3 1181 351 0 0 0 chr1 78201710 78201749 -118993683 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1181 1085 64 7 14 chr1 78202085 78202227 -118993205 + B1_Mus1 SINE Alu 2 142 -6 3 1181 183 0 77 51 chr1 78202228 78202267 -118993165 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1181 414 0 0 0 chr1 78203001 78203047 -118992385 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1181 724 184 0 21 chr1 78203379 78203523 -118991909 + B1_Mus2 SINE Alu 5 145 -2 3 1181 522 235 0 0 chr1 78203663 78203765 -118991667 + ID_B1 SINE B4 116 217 -7 3 1181 275 196 59 0 chr1 78203720 78203771 -118991661 + PB1D7 SINE Alu 66 119 -1 3 1181 264 291 9 52 chr1 78204108 78204224 -118991208 + RLTR13D6 LTR ERVK 285 395 -507 3 1181 330 26 0 0 chr1 78204364 78204403 -118991029 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1181 341 355 0 0 chr1 78204403 78204510 -118990922 - PB1D10 SINE Alu -8 109 3 3 1181 1220 54 7 0 chr1 78205429 78205576 -118989856 + B1_Mus1 SINE Alu 1 148 0 3 1181 253 385 0 0 chr1 78205829 78205912 -118989520 + ID SINE ID 2 84 -140 3 1181 333 35 69 0 chr1 78205912 78205970 -118989462 + (CAAAAA)n Simple_repeat Simple_repeat 3 64 0 3 1181 201 147 0 0 chr1 78206208 78206242 -118989190 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 3 1181 315 0 0 0 chr1 78206725 78206760 -118988672 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1181 252 257 160 13 chr1 78206761 78206836 -118988596 - B1F SINE Alu -41 108 23 3 1181 261 0 0 0 chr1 78207037 78207066 -118988366 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1181 202 260 48 68 chr1 78207135 78207238 -118988194 + MER5B DNA MER1_type 5 105 -73 3 1181 252 0 0 0 chr1 78208338 78208366 -118987066 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1181 470 256 115 35 chr1 78208673 78208860 -118986572 - ID_B1 SINE B4 -47 245 39 3 1181 300 260 37 83 chr1 78209350 78209459 -118985973 - MIRc SINE MIR -74 194 91 3 1181 678 135 138 31 chr1 78209818 78209948 -118985484 + B1_Mur3 SINE Alu 4 147 -2 3 1181 265 18 86 17 chr1 78210141 78210199 -118985233 + (TTTTG)n Simple_repeat Simple_repeat 1 62 0 3 1181 1103 59 15 0 chr1 78210210 78210346 -118985086 - B1_Mm SINE Alu -9 138 1 3 1181 221 0 35 0 chr1 78210348 78210377 -118985055 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1181 657 219 104 74 chr1 78211134 78211336 -118984096 + B3 SINE B2 9 216 0 3 1181 23 33 0 0 chr1 78212246 78212276 -118983156 + AT_rich Low_complexity Low_complexity 1 30 0 3 1181 321 89 0 0 chr1 78213422 78213467 -118981965 + (CCG)n Simple_repeat Simple_repeat 1 45 0 3 1181 317 180 39 20 chr1 78213628 78213730 -118981702 + (CGG)n Simple_repeat Simple_repeat 2 105 0 3 1181 22 70 0 0 chr1 78213868 78213911 -118981521 + GC_rich Low_complexity Low_complexity 1 43 0 3 1181 216 0 0 0 chr1 78214385 78214409 -118981023 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 3 1181 523 184 70 0 chr1 78215794 78215908 -118979524 + ID_B1 SINE B4 102 223 -1 3 1181 396 299 81 34 chr1 78216544 78216693 -118978739 - MER20 DNA MER1_type 0 219 64 3 1181 502 182 138 31 chr1 78216995 78217125 -118978307 - B1F SINE Alu -1 148 5 3 1181 1162 124 99 52 chr1 78217640 78217852 -118977580 + URR1A DNA MER1_type 2 223 -3 3 1181 193 363 119 53 chr1 78217876 78218103 -118977329 + MIR SINE MIR 21 262 0 3 1181 912 253 14 38 chr1 78218558 78218850 -118976582 + L1MC3 LINE L1 7495 7779 -6 3 1181 342 330 56 70 chr1 78218873 78219157 -118976275 - ORR1E LTR MaLR 0 359 80 3 1181 2996 71 10 20 chr1 78219174 78219575 -118975857 - L1Md_F2 LINE L1 -4 6578 6182 3 1181 950 226 41 10 chr1 78219731 78219928 -118975504 + B3 SINE B2 4 206 -10 3 1181 214 308 30 15 chr1 78220327 78220393 -118975039 - ID SINE ID -142 82 16 3 1181 293 296 109 68 chr1 78220540 78220732 -118974700 - L2a LINE L2 -1 3425 3226 3 1181 1535 193 42 39 chr1 78220732 78221067 -118974365 + Lx8 LINE L1 6815 7150 -323 3 1181 281 291 133 7 chr1 78221063 78221198 -118974234 + Lx8 LINE L1 7300 7451 -22 3 1181 327 194 32 0 chr1 78221207 78221300 -118974132 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 1181 2213 188 15 12 chr1 78221300 78221704 -118973728 + MTB_Mm LTR MaLR 1 405 -2 3 1181 328 289 24 0 chr1 78221707 78221790 -118973642 + MTD LTR MaLR 172 256 -163 3 1181 333 0 0 0 chr1 78221790 78221827 -118973605 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1181 484 329 83 15 chr1 78221902 78222250 -118973182 - L2a LINE L2 -252 3174 2795 3 1181 291 321 113 0 chr1 78222253 78222359 -118973073 + PB1D7 SINE Alu 3 120 0 3 1181 489 180 0 11 chr1 78222390 78222480 -118972952 + MTD LTR MaLR 8 96 -323 3 1181 1149 269 152 3 chr1 78222513 78222900 -118972532 - RCHARR1 DNA MER1_type -527 447 3 3 1181 744 180 43 0 chr1 78223270 78223409 -118972023 + B1_Mur2 SINE Alu 4 148 -1 3 1181 312 206 16 0 chr1 78223595 78223658 -118971774 - MLT1D LTR MaLR -138 367 304 3 1181 1076 147 183 5 chr1 78223658 78223849 -118971583 + URR1B DNA MER1_type 1 225 0 3 1181 260 313 103 89 chr1 78224214 78224505 -118970927 + MamGypLTR2c LTR Gypsy 684 978 -90 3 1181 183 239 63 74 chr1 78224753 78224848 -118970584 - L2c LINE L2 -189 3198 3105 3 1181 645 196 0 9 chr1 78225341 78225454 -118969978 - PB1D9 SINE Alu -8 112 1 3 1181 511 236 38 0 chr1 78226414 78226520 -118968912 + PB1D10 SINE Alu 1 110 -7 3 1181 910 170 0 0 chr1 78226532 78226673 -118968759 + B1_Mus2 SINE Alu 2 142 -5 3 1181 803 303 0 6 chr1 78226711 78226874 -118968558 + B3 SINE B2 5 167 -49 3 1181 485 71 14 0 chr1 78226874 78226944 -118968488 + (CATA)n Simple_repeat Simple_repeat 4 74 0 3 1181 803 303 0 6 chr1 78226944 78226959 -118968473 + B3 SINE B2 168 182 -34 3 1181 28 29 0 0 chr1 78226959 78226994 -118968438 + AT_rich Low_complexity Low_complexity 1 35 0 3 1181 570 259 199 68 chr1 78227375 78227470 -118967962 - L1M3 LINE L1 -1023 5117 4967 3 1181 1147 206 9 9 chr1 78227470 78227686 -118967746 - B3 SINE B2 0 216 1 3 1181 570 259 199 68 chr1 78227686 78227882 -118967550 - L1M3 LINE L1 -1174 4966 4762 3 1181 271 246 62 0 chr1 78227882 78227947 -118967485 - ID4_ SINE ID -14 69 1 3 1181 570 259 199 68 chr1 78227947 78228167 -118967265 - L1M3 LINE L1 -1379 4761 4539 3 1181 1056 39 0 0 chr1 78228181 78228310 -118967122 + (CA)n Simple_repeat Simple_repeat 1 129 0 3 1181 261 235 60 20 chr1 78229150 78229250 -118966182 - Arthur1 DNA Tip100 -282 3665 3562 3 1181 353 291 70 16 chr1 78229537 78229722 -118965710 - Arthur1 DNA Tip100 -5 3942 3748 3 1181 564 120 59 8 chr1 78230069 78230187 -118965245 - Lx9 LINE L1 -1 7643 7520 3 1181 314 45 23 0 chr1 78230189 78230233 -118965199 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1181 1036 260 0 0 chr1 78230233 78230460 -118964972 - Lx9 LINE L1 -161 7483 7257 3 1181 528 263 9 9 chr1 78230479 78230594 -118964838 - B1_Mur2 SINE Alu -13 136 22 3 1181 234 135 0 0 chr1 78230592 78230629 -118964803 - B3A SINE B2 -159 39 3 3 1181 669 226 137 0 chr1 78230630 78230798 -118964634 - B3A SINE B2 -7 191 1 3 1181 230 300 0 24 chr1 78230809 78230891 -118964541 - Arthur1 DNA Tip100 -548 3399 3320 3 1181 653 300 93 31 chr1 78230903 78231296 -118964136 - Arthur1B DNA Tip100 -3500 447 2 3 1181 219 329 146 19 chr1 78231483 78231641 -118963791 - MER5B DNA MER1_type 0 178 1 3 1181 586 269 57 0 chr1 78231829 78231899 -118963533 + RSINE1 SINE B4 2 75 -90 3 1181 2318 168 18 18 chr1 78231899 78232293 -118963139 - ORR1B1 LTR MaLR 0 394 1 3 1181 586 269 57 0 chr1 78232293 78232363 -118963069 + RSINE1 SINE B4 76 149 -16 3 1181 225 0 0 0 chr1 78232365 78232390 -118963042 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1181 1139 99 105 0 chr1 78232420 78232591 -118962841 + B2_Mm2 SINE B2 3 191 -4 4 1181 387 0 0 0 chr1 78232680 78232723 -118962709 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1181 396 40 0 0 chr1 78232723 78232772 -118962660 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1181 268 226 0 0 chr1 78232772 78232825 -118962607 + ORR1D1 LTR MaLR 179 231 -143 4 1181 3097 184 61 3 chr1 78232819 78233424 -118962008 + ORR1D1-int LTR MaLR 730 1369 -1 4 1181 1467 197 85 11 chr1 78233425 78233707 -118961725 + ORR1D1 LTR MaLR 1 303 -71 4 1181 296 330 0 20 chr1 78234164 78234266 -118961166 + PB1D10 SINE Alu 7 106 -11 4 1181 544 147 7 29 chr1 78234963 78235103 -118960329 + CT-rich Low_complexity Low_complexity 3 139 0 4 1181 371 219 14 0 chr1 78235123 78235196 -118960236 - ID4 SINE ID -9 74 1 4 1181 2198 60 7 11 chr1 78235378 78235648 -118959784 - L1_Mus1 LINE L1 -2 6565 6297 4 1181 22 0 0 0 chr1 78235726 78235748 -118959684 + AT_rich Low_complexity Low_complexity 1 22 0 4 1181 746 246 42 33 chr1 78235867 78236081 -118959351 + B3 SINE B2 1 216 0 4 1181 250 317 0 12 chr1 78236121 78236204 -118959228 + ID2 SINE ID 2 83 0 4 1181 403 295 82 0 chr1 78236215 78236328 -118959104 + B4A SINE B4 112 234 -58 4 1181 324 320 18 72 chr1 78236328 78236439 -118958993 + B4A SINE B4 3 107 -185 4 1181 2702 35 3 6 chr1 78236447 78236767 -118958665 - L1Md_F3 LINE L1 0 6584 6266 4 1181 22 35 0 0 chr1 78236780 78236809 -118958623 + AT_rich Low_complexity Low_complexity 1 29 0 4 1181 1085 303 109 27 chr1 78236809 78237443 -118957989 - L1_Mur3 LINE L1 -681 5199 4514 4 1181 38830 30 0 1 chr1 78237439 78243838 -118951594 - L1Md_T LINE L1 0 6585 95 4 1181 383 288 116 36 chr1 78243838 78244010 -118951422 + B4A SINE B4 54 236 -56 4 1181 306 0 0 0 chr1 78244050 78244084 -118951348 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1181 26 74 0 0 chr1 78244197 78244251 -118951181 + AT_rich Low_complexity Low_complexity 1 54 0 4 1181 291 71 0 0 chr1 78244256 78244298 -118951134 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1181 462 36 0 0 chr1 78244298 78244353 -118951079 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1181 450 0 0 0 chr1 78244354 78244404 -118951028 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1181 1270 45 26 0 chr1 78244883 78245038 -118950394 + L1_Mus2 LINE L1 6408 6566 0 4 1181 1258 55 0 0 chr1 78245115 78245261 -118950171 + B1_Mm SINE Alu 2 147 0 4 1181 234 0 0 0 chr1 78245261 78245287 -118950145 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1181 741 234 7 27 chr1 78247028 78247177 -118948255 - RSINE1 SINE B4 -18 147 2 4 1181 186 103 0 0 chr1 78247189 78247218 -118948214 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 4 1181 1113 159 26 26 chr1 78247263 78247457 -118947975 - B2_Mm2 SINE B2 0 195 2 4 1181 254 50 25 0 chr1 78247569 78247609 -118947823 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 4 1181 217 328 0 0 chr1 78248331 78248395 -118947037 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1181 1377 251 146 87 chr1 78248460 78248967 -118946465 - ORR1B2-int LTR MaLR -743 627 91 4 1181 3441 95 4 9 chr1 78248969 78249425 -118946007 - L1_Mus3 LINE L1 0 6638 6185 4 147 4747 67 0 14 chr1 78249425 78250200 -118945232 + L1_Mus3 LINE L1 5410 6175 -463 4 1182 15156 112 15 11 chr1 78250236 78252504 -118942928 + MurERV4_19-int LTR ERVK 2413 4687 -1093 4 1182 901 119 28 28 chr1 78252508 78252689 -118942743 + MurERV4_19-int LTR ERVK 5572 5752 -28 4 1182 1584 168 235 6 chr1 78252732 78253229 -118942203 + RMER19C LTR ERVK 1 611 0 4 1182 268 172 13 147 chr1 78253232 78253258 -118942174 - ORR1B2-int LTR MaLR -1898 65 49 4 1182 1459 73 17 0 chr1 78253258 78253436 -118941996 + B2_Mm2 SINE B2 2 182 -13 4 1182 180 0 0 0 chr1 78253436 78253456 -118941976 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1182 299 149 0 0 chr1 78253456 78253503 -118941929 - ORR1B2-int LTR MaLR -1745 47 1 4 1182 599 37 0 24 chr1 78253521 78253604 -118941828 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 4 1182 440 273 61 0 chr1 78253616 78253748 -118941684 - MTD LTR MaLR -54 365 226 4 1182 6329 65 11 1 chr1 78253759 78254732 -118940700 - L1VL4 LINE L1 -1847 1712 735 4 1182 3389 60 2 2 chr1 78254732 78255132 -118940300 - MTB LTR MaLR 0 400 1 4 1182 5703 87 7 24 chr1 78255132 78255699 -118939733 - L1VL4 LINE L1 -5568 734 210 4 1182 414 145 14 0 chr1 78255699 78255768 -118939664 - ORR1B2 LTR MaLR -2 365 296 4 1182 626 294 62 31 chr1 78255774 78255999 -118939433 - B4A SINE B4 -59 233 2 4 1182 1405 83 22 0 chr1 78256260 78256441 -118938991 - B2_Mm1t SINE B2 -7 186 2 4 1182 1067 249 14 0 chr1 78256470 78256683 -118938749 - B3 SINE B2 0 216 1 4 1182 420 234 56 9 chr1 78256832 78256940 -118938492 + PB1D10 SINE Alu 5 117 0 4 1182 1095 152 6 0 chr1 78257054 78257225 -118938207 + MTC LTR MaLR 160 331 -90 4 1182 868 151 29 0 chr1 78257336 78257475 -118937957 - B1_Mur2 SINE Alu -5 144 2 4 1182 669 263 134 0 chr1 78257533 78257704 -118937728 + B3 SINE B2 16 209 -7 4 1182 282 301 93 22 chr1 78257772 78257911 -118937521 - Charlie24 DNA MER1_type -373 2077 1929 4 1182 1026 320 126 25 chr1 78258014 78258530 -118936902 - Charlie24 DNA MER1_type -474 1976 1409 4 1182 239 225 0 24 chr1 78258552 78258634 -118936798 + (TATG)n Simple_repeat Simple_repeat 4 83 0 4 1182 441 308 37 37 chr1 78258659 78258821 -118936611 - Charlie24 DNA MER1_type -1056 1394 1233 4 1182 558 335 74 37 chr1 78258982 78259471 -118935961 - L1MC LINE L1 -1096 5050 4544 4 1182 313 281 52 10 chr1 78259480 78259577 -118935855 + PB1D10 SINE Alu 1 101 -16 4 1182 183 80 0 0 chr1 78259588 78259613 -118935819 + (CAA)n Simple_repeat Simple_repeat 3 27 0 4 1182 397 272 179 25 chr1 78259707 78259869 -118935563 - MER2 DNA MER2_type -41 304 118 4 1182 238 212 0 96 chr1 78259931 78260004 -118935428 - L1MEc LINE L1 -1615 4704 4639 4 1182 186 43 0 0 chr1 78260062 78260085 -118935347 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1182 1886 214 88 35 chr1 78260085 78261017 -118934415 - RMER1B Other Other -1 1065 12 4 1182 788 193 71 0 chr1 78261037 78261177 -118934255 - B1_Mur4 SINE Alu 0 150 1 4 1182 833 175 66 0 chr1 78261196 78261333 -118934099 - B1_Mus1 SINE Alu -1 147 2 4 1182 35 24 0 0 chr1 78261351 78261393 -118934039 + AT_rich Low_complexity Low_complexity 1 42 0 4 1182 423 68 0 0 chr1 78261402 78261461 -118933971 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1182 532 268 31 8 chr1 78261469 78261597 -118933835 - RSINE1 SINE B4 -31 134 4 4 1182 406 332 63 0 chr1 78261606 78261796 -118933636 - L1MEc LINE L1 -1828 4491 4290 4 1182 415 305 39 24 chr1 78261956 78262216 -118933216 + L1M2 LINE L1 2405 2650 -4199 4 1182 944 161 18 142 chr1 78262573 78262798 -118932634 + ORR1B2 LTR MaLR 1 197 -170 4 1182 347 291 122 30 chr1 78262795 78262926 -118932506 + B4A SINE B4 148 290 -2 4 1182 369 131 0 0 chr1 78262928 78262989 -118932443 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1182 264 284 122 0 chr1 78262989 78263137 -118932295 + L1_Mur3 LINE L1 3159 3324 -2556 4 1182 295 256 99 64 chr1 78263252 78263423 -118932009 - L1MEc LINE L1 -6145 255 79 4 1182 23 68 0 0 chr1 78263492 78263536 -118931896 + AT_rich Low_complexity Low_complexity 1 44 0 4 1182 1339 34 0 0 chr1 78263791 78263938 -118931494 - B1_Mm SINE Alu 0 147 1 4 1182 544 306 35 23 chr1 78264218 78264392 -118931040 - B3A SINE B2 -12 204 29 4 1182 874 127 0 143 chr1 78264419 78264594 -118930838 - B1_Mur4 SINE Alu 0 150 1 4 1182 244 150 0 0 chr1 78264595 78264635 -118930797 - B2_Mm2 SINE B2 -155 40 1 4 1182 598 280 67 0 chr1 78265200 78265350 -118930082 + ID_B1 SINE B4 2 161 -63 4 1182 218 303 51 38 chr1 78265289 78265368 -118930064 + B1_Mur4 SINE Alu 20 99 -51 4 1182 739 169 16 16 chr1 78265418 78265544 -118929888 - B1_Mur3 SINE Alu -6 143 18 4 1182 815 275 179 0 chr1 78266198 78266489 -118928943 - MLT1A0 LTR MaLR -2 363 21 4 1182 654 235 26 0 chr1 78266531 78266684 -118928748 - MLT1B LTR MaLR -233 157 1 4 1182 1426 209 97 29 chr1 78267131 78267480 -118927952 + RLTR30 LTR ERV1 1 373 -6 4 1182 2390 116 19 0 chr1 78267629 78267947 -118927485 - ORR1A3 LTR MaLR 0 326 3 4 1182 744 22 0 0 chr1 78269366 78269456 -118925976 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 1182 454 261 163 7 chr1 78269459 78269594 -118925838 - B3A SINE B2 -42 156 1 4 1182 791 35 35 0 chr1 78270444 78270559 -118924873 + (GA)n Simple_repeat Simple_repeat 2 120 0 4 1182 250 75 18 54 chr1 78271299 78271355 -118924077 + B3 SINE B2 163 216 0 4 1182 242 288 111 12 chr1 78271847 78271928 -118923504 - ORR1E LTR MaLR -265 94 6 4 1182 889 302 87 12 chr1 78271944 78272276 -118923156 - MTE-int LTR MaLR -73 1507 1151 4 1182 273 336 65 32 chr1 78272270 78272393 -118923039 - MTE-int LTR MaLR -605 975 849 4 1182 502 315 26 63 chr1 78273292 78273482 -118921950 - MER20 DNA MER1_type -5 214 32 4 1182 538 283 73 96 chr1 78273610 78273911 -118921521 + ORR1E LTR MaLR 66 359 0 4 1182 37 0 0 0 chr1 78274010 78274047 -118921385 + AT_rich Low_complexity Low_complexity 1 37 0 4 1182 315 263 69 17 chr1 78274109 78274225 -118921207 + L1MCa LINE L1 1854 1975 -4533 4 1182 294 156 0 0 chr1 78274591 78274636 -118920796 - 5S rRNA rRNA -76 45 1 4 1182 303 274 81 44 chr1 78274642 78274802 -118920630 + L1M5 LINE L1 5335 5500 -624 4 1182 419 341 81 87 chr1 78275019 78275363 -118920069 + ORR1E LTR MaLR 6 347 -12 4 1182 266 299 0 0 chr1 78275368 78275455 -118919977 + L1MB8 LINE L1 6081 6167 -11 4 1182 756 171 12 25 chr1 78275684 78275846 -118919586 + RMER4B LTR ERVK 17 176 -409 4 1182 469 220 77 112 chr1 78275986 78276263 -118919169 + RMER4B LTR ERVK 351 610 -1 4 1182 1343 132 10 0 chr1 78276263 78276468 -118918964 + URR1A DNA MER1_type 20 226 0 4 1182 984 140 0 20 chr1 78276899 78277045 -118918387 - B1_Mus1 SINE Alu -3 145 3 4 1182 627 197 26 0 chr1 78277058 78277175 -118918257 - B1_Mur3 SINE Alu 0 149 30 4 1182 413 303 231 36 chr1 78277535 78277730 -118917702 - B4A SINE B4 -59 233 1 4 1182 574 316 121 23 chr1 78278555 78279096 -118916336 - MLT1E1 LTR MaLR -4 650 11 4 1182 271 133 53 0 chr1 78279117 78279192 -118916240 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 4 1182 1020 284 31 41 chr1 78279193 78279206 -118916226 - B4 SINE B4 0 292 280 5 1182 1128 56 0 0 chr1 78279206 78279350 -118916082 + (GGGAGA)n Simple_repeat Simple_repeat 1 144 0 5 1182 1020 284 31 41 chr1 78279350 78279630 -118915802 - B4 SINE B4 -13 279 2 5 1182 1233 168 50 0 chr1 78279899 78280101 -118915331 - B3 SINE B2 -3 213 2 5 1182 360 0 0 0 chr1 78280814 78280854 -118914578 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1182 451 276 97 0 chr1 78282152 78282286 -118913146 + B4 SINE B4 1 147 -145 5 1182 465 241 0 0 chr1 78282300 78282387 -118913045 + B4A SINE B4 200 286 -6 5 1182 275 286 133 0 chr1 78282557 78282655 -118912777 + PB1D10 SINE Alu 7 117 0 5 1182 995 185 38 0 chr1 78282659 78282843 -118912589 + B3 SINE B2 1 191 -25 5 1182 225 304 78 10 chr1 78283187 78283290 -118912142 - MIRc SINE MIR -55 213 104 5 1182 268 217 0 77 chr1 78283691 78283756 -118911676 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 5 1182 625 167 135 0 chr1 78284111 78284237 -118911195 + B1_Mus1 SINE Alu 1 143 -5 5 1182 231 273 0 0 chr1 78284396 78284451 -118910981 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1182 695 202 0 8 chr1 78284582 78284707 -118910725 + B3A SINE B2 1 124 -74 5 1182 210 118 0 0 chr1 78284732 78284766 -118910666 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1182 525 32 0 0 chr1 78284766 78284828 -118910604 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1182 920 169 0 0 chr1 78285358 78285500 -118909932 + B1_Mur2 SINE Alu 2 143 -6 5 1182 273 257 0 28 chr1 78285507 78285579 -118909853 + GA-rich Low_complexity Low_complexity 3 72 0 5 1182 1242 277 115 24 chr1 78285796 78286291 -118909141 + MLT2B4 LTR ERVL 2 541 -15 5 1182 659 146 359 6 chr1 78286585 78286744 -118908688 - B3 SINE B2 0 216 2 5 1182 4765 61 18 13 chr1 78286855 78287467 -118907965 + L1_Mus2 LINE L1 5951 6565 -1 5 1182 1472 127 18 18 chr1 78287719 78287944 -118907488 + URR1B DNA MER1_type 1 225 0 5 1182 213 222 42 0 chr1 78287979 78288051 -118907381 + T-rich Low_complexity Low_complexity 5 79 0 5 1182 977 211 6 6 chr1 78288065 78288246 -118907186 - B3A SINE B2 -17 181 1 5 1182 964 155 0 0 chr1 78288317 78288459 -118906973 - B1_Mur4 SINE Alu -7 143 2 5 1182 638 183 82 1 chr1 78288600 78288744 -118906688 - RMER19B LTR ERVK -449 162 4 5 1182 590 160 28 84 chr1 78288893 78289036 -118906396 - MTD LTR MaLR -14 405 271 5 1182 352 185 15 0 chr1 78289027 78289092 -118906340 - MTC LTR MaLR -355 66 1 5 1182 4233 151 65 107 chr1 78289188 78290130 -118905302 + RMER19B LTR ERVK 1 902 0 5 1182 3026 73 8 8 chr1 78290555 78290955 -118904477 - MTB LTR MaLR 0 400 1 5 1182 511 230 0 0 chr1 78291021 78291121 -118904311 + B1_Mur1 SINE Alu 10 109 -40 5 1182 414 232 12 0 chr1 78291403 78291485 -118903947 + ID4 SINE ID 1 83 0 5 1182 327 277 39 19 chr1 78292524 78292627 -118902805 - L1MA8 LINE L1 -22 6269 6165 5 1182 351 0 0 0 chr1 78292640 78292679 -118902753 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1182 344 289 44 0 chr1 78292679 78292769 -118902663 - RSINE1 SINE B4 -69 96 3 5 1182 705 277 54 21 chr1 78292770 78293010 -118902422 - L1MA8 LINE L1 -249 6042 5795 5 1182 578 221 8 23 chr1 78293933 78294063 -118901369 + B1_Mur3 SINE Alu 2 129 -20 5 1182 763 10 21 0 chr1 78294069 78294165 -118901267 + (GA)n Simple_repeat Simple_repeat 1 98 0 5 1182 553 108 0 0 chr1 78294369 78294443 -118900989 + tRNA-Pro-CCY tRNA tRNA 1 74 -1 5 1182 34 24 0 0 chr1 78294881 78294922 -118900510 + AT_rich Low_complexity Low_complexity 1 41 0 5 1182 396 291 29 10 chr1 78294937 78295052 -118900380 - PB1D7 SINE Alu -2 118 2 5 1182 578 141 270 0 chr1 78295340 78295453 -118899979 - Lx9 LINE L1 -7 7637 7481 5 1182 426 121 0 0 chr1 78295453 78295519 -118899913 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1182 578 141 270 0 chr1 78295519 78295568 -118899864 - Lx9 LINE L1 -164 7480 7432 5 1182 549 44 0 0 chr1 78295937 78296005 -118899427 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1182 351 44 0 0 chr1 78296005 78296049 -118899383 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1182 339 263 42 70 chr1 78296059 78296202 -118899230 + B1F SINE Alu 1 139 -10 5 1182 233 198 49 0 chr1 78296225 78296306 -118899126 + GA-rich Low_complexity Low_complexity 4 88 0 5 1182 804 208 0 20 chr1 78296814 78296826 -118898606 - B1_Mur4 SINE Alu -1 149 140 5 1182 192 40 0 0 chr1 78296826 78296851 -118898581 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 1182 804 208 0 20 chr1 78296851 78296990 -118898442 - B1_Mur4 SINE Alu -11 139 1 5 1182 477 0 0 0 chr1 78297015 78297068 -118898364 + (TATG)n Simple_repeat Simple_repeat 3 55 0 5 1182 296 8 0 4 chr1 78297068 78297111 -118898321 - B2_Mm1t SINE B2 -39 154 112 5 1182 234 0 0 0 chr1 78297391 78297417 -118898015 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1182 2969 142 56 10 chr1 78297417 78297809 -118897623 - Lx4A LINE L1 -4 7054 6652 5 1182 3602 13 2 0 chr1 78297809 78298204 -118897228 + MTA_Mm LTR MaLR 1 396 0 5 1182 2969 142 56 10 chr1 78298204 78298315 -118897117 - Lx4A LINE L1 -407 6651 6530 5 1182 1589 230 54 113 chr1 78298319 78299228 -118896204 - RMER1A Other Other -383 647 19 5 1182 225 0 0 0 chr1 78299228 78299253 -118896179 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5 1182 189 0 0 0 chr1 78299253 78299273 -118896159 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1182 1578 227 51 72 chr1 78299273 78299377 -118896055 - RMER1B Other Other -913 153 51 5 1182 260 246 31 0 chr1 78299563 78299628 -118895804 - ID4_ SINE ID -3 80 14 5 1182 260 299 39 0 chr1 78299694 78299771 -118895661 - ID4 SINE ID 0 83 4 5 1182 587 252 21 14 chr1 78299816 78299957 -118895475 - RSINE1 SINE B4 -13 152 11 5 1182 578 279 42 67 chr1 78300235 78300670 -118894762 - RLTR15 LTR ERVK -68 291 1 5 1182 588 308 6 25 chr1 78300822 78300985 -118894447 - RSINE1 SINE B4 0 165 6 5 1182 1038 78 0 0 chr1 78301144 78301285 -118894147 + (CAGAGA)n Simple_repeat Simple_repeat 4 144 0 5 1182 9953 94 22 8 chr1 78301720 78303327 -118892105 - Lx2 LINE L1 -18 6979 5353 5 1182 369 235 83 62 chr1 78303780 78303925 -118891507 + MLT1F2 LTR MaLR 413 560 0 5 1182 727 168 48 0 chr1 78303954 78304079 -118891353 + B1_Mur4 SINE Alu 5 135 -15 5 1182 297 0 0 0 chr1 78304081 78304114 -118891318 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1182 294 356 26 0 chr1 78304703 78304818 -118890614 + PB1D9 SINE Alu 3 120 0 5 1182 232 190 0 17 chr1 78304824 78304883 -118890549 + B3A SINE B2 2 59 -139 5 1182 459 35 0 0 chr1 78305232 78305289 -118890143 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1182 1103 89 129 12 chr1 78305433 78305604 -118889828 + B2_Mm2 SINE B2 2 192 -3 5 1182 669 58 0 0 chr1 78306233 78306319 -118889113 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1182 234 0 0 0 chr1 78306320 78306346 -118889086 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1182 198 0 108 0 chr1 78308861 78308898 -118886534 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1182 335 242 111 0 chr1 78308919 78309018 -118886414 - PB1D7 SINE Alu -1 119 10 5 1182 671 190 6 64 chr1 78310283 78310440 -118884992 + B1_Mus1 SINE Alu 1 148 0 5 1182 330 250 167 54 chr1 78310648 78310834 -118884598 - RMER21B LTR ERV1 -275 567 361 5 1182 40 0 0 0 chr1 78310855 78310895 -118884537 + AT_rich Low_complexity Low_complexity 1 40 0 5 1182 842 236 118 26 chr1 78311115 78311432 -118884000 - ORR1D2 LTR MaLR -1 373 6 5 1182 1193 190 0 9 chr1 78312702 78312915 -118882517 + B3 SINE B2 1 211 -5 5 1182 210 71 0 0 chr1 78312919 78312947 -118882485 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1182 236 155 86 0 chr1 78313193 78313251 -118882181 + L1MB3 LINE L1 6121 6183 0 5 1182 251 370 0 0 chr1 78313322 78313403 -118882029 - ID4_ SINE ID 0 83 3 5 1182 369 0 0 0 chr1 78313405 78313446 -118881986 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1182 813 299 52 11 chr1 78313457 78313728 -118881704 - B4 SINE B4 -8 284 3 5 1182 259 284 49 0 chr1 78313744 78313825 -118881607 + L1MC3 LINE L1 7140 7224 -561 5 1182 838 238 108 45 chr1 78313920 78314254 -118881178 + L1MC3 LINE L1 7424 7778 -7 5 1182 600 230 207 6 chr1 78314366 78314545 -118880887 + B3 SINE B2 2 216 0 5 1182 309 155 0 0 chr1 78314734 78314792 -118880640 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1182 1584 187 131 33 chr1 78315943 78316363 -118879069 - RMER19C LTR ERVK 0 611 151 5 1182 405 0 0 0 chr1 78316446 78316491 -118878941 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 5 1182 1677 246 11 6 chr1 78316521 78316869 -118878563 + Lx6 LINE L1 6929 7278 -182 5 1182 1772 170 72 6 chr1 78316865 78317214 -118878218 - RMER1B Other Other -3 1063 692 5 1182 873 139 49 37 chr1 78317223 78317387 -118878045 + Lx7 LINE L1 7531 7696 0 5 1182 623 212 17 0 chr1 78317601 78317719 -118877713 + PB1D9 SINE Alu 1 120 0 5 1182 319 257 231 21 chr1 78317955 78318098 -118877334 - B3A SINE B2 -3 195 23 5 1182 432 0 0 0 chr1 78318098 78318146 -118877286 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1182 598 231 11 91 chr1 78318179 78318355 -118877077 - B4 SINE B4 -4 288 127 5 1182 207 0 0 0 chr1 78319663 78319686 -118875746 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1182 555 301 38 0 chr1 78320051 78320234 -118875198 - ID_B1 SINE B4 0 224 35 5 1182 22 0 0 0 chr1 78320254 78320276 -118875156 + AT_rich Low_complexity Low_complexity 1 22 0 5 1182 251 312 73 0 chr1 78320994 78321090 -118874342 - L1M5 LINE L1 -400 5840 5738 5 1182 229 200 18 18 chr1 78321118 78321174 -118874258 - ID_B1 SINE B4 -4 220 165 5 1182 270 269 39 0 chr1 78321173 78321251 -118874181 + RSINE1 SINE B4 82 162 -3 5 1182 790 206 7 0 chr1 78321994 78322130 -118873302 - B1_Mur2 SINE Alu -11 138 2 6 1182 249 241 19 0 chr1 78323107 78323161 -118872271 + ID4_ SINE ID 2 56 -27 6 1182 552 115 0 0 chr1 78323191 78323295 -118872137 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1182 244 317 0 0 chr1 78323300 78323360 -118872072 - tRNA-Ala-GCY_ tRNA tRNA -5 70 11 6 1182 269 246 0 16 chr1 78323313 78323375 -118872057 - ID4_ SINE ID -20 63 3 6 1182 560 298 25 6 chr1 78323385 78323547 -118871885 - B3 SINE B2 -25 191 27 6 1182 1246 87 16 0 chr1 78323551 78323736 -118871696 - B2_Mm2 SINE B2 -1 194 7 6 1182 259 146 0 0 chr1 78323755 78323796 -118871636 - B3 SINE B2 -175 41 1 6 1182 318 258 54 102 chr1 78323815 78323962 -118871470 - B1_Mur1 SINE Alu -9 140 1 6 1182 976 301 28 21 chr1 78324708 78325095 -118870337 + L1MA4 LINE L1 4771 5160 -983 6 1182 1360 271 60 50 chr1 78325089 78325593 -118869839 + L1MA4 LINE L1 5296 5792 -508 6 1182 303 85 0 0 chr1 78325593 78325640 -118869792 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 6 1182 1360 278 57 65 chr1 78325640 78325897 -118869535 + L1MA4 LINE L1 5793 6041 -256 6 1182 327 243 34 33 chr1 78326087 78326192 -118869240 - RSINE1 SINE B4 -5 160 78 6 1182 1760 209 36 32 chr1 78326465 78326876 -118868556 + MTD LTR MaLR 7 419 0 6 1182 1517 194 113 24 chr1 78326970 78327307 -118868125 + ORR1D2 LTR MaLR 1 367 -3 6 1182 207 250 0 0 chr1 78328494 78328562 -118866870 + CT-rich Low_complexity Low_complexity 1 68 0 6 1182 189 0 0 0 chr1 78328712 78328733 -118866699 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1182 534 247 0 0 chr1 78329078 78329256 -118866176 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1182 189 219 0 0 chr1 78329276 78329349 -118866083 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1182 1400 133 36 9 chr1 78329709 78329929 -118865503 - URR1A DNA MER1_type 0 226 1 6 1182 622 187 13 0 chr1 78330749 78330904 -118864528 + CT-rich Low_complexity Low_complexity 3 159 0 6 1182 321 237 0 0 chr1 78330909 78330968 -118864464 - B1F1 SINE Alu -90 59 1 6 1182 228 213 11 167 chr1 78330968 78330996 -118864436 - MT2B2 LTR ERVL -367 214 142 6 1182 683 273 48 60 chr1 78331050 78331319 -118864113 + MTEa LTR MaLR 15 280 -99 6 1182 306 320 0 0 chr1 78331903 78332000 -118863432 - PB1D10 SINE Alu -18 99 3 6 1182 219 292 14 0 chr1 78332496 78332568 -118862864 - L2a LINE L2 -20 3406 3334 6 1182 392 243 9 19 chr1 78332826 78332931 -118862501 - PB1D10 SINE Alu -10 107 4 6 1182 471 273 111 74 chr1 78332981 78333171 -118862261 + B3A SINE B2 2 198 0 6 1182 750 177 0 72 chr1 78333177 78333329 -118862103 + B1_Mur1 SINE Alu 3 143 -6 6 1182 263 211 62 10 chr1 78333458 78333554 -118861878 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 1182 499 327 117 45 chr1 78333555 78333821 -118861611 - B4A SINE B4 -6 286 2 6 1182 196 372 79 26 chr1 78334465 78334694 -118860738 + MIRb SINE MIR 9 249 -19 6 1182 682 253 65 5 chr1 78334989 78335188 -118860244 + L3b LINE CR1 172 382 -100 6 1182 225 362 0 0 chr1 78335477 78335557 -118859875 - ID4_ SINE ID -3 80 1 6 1182 249 217 229 0 chr1 78335596 78335679 -118859753 + PB1D10 SINE Alu 12 113 -4 6 1182 623 252 50 129 chr1 78335686 78335927 -118859505 + B4 SINE B4 2 223 -69 6 1182 219 44 67 0 chr1 78335927 78335972 -118859460 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 6 1182 291 347 0 0 chr1 78336065 78336163 -118859269 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1182 342 0 0 0 chr1 78336172 78336210 -118859222 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1182 27 49 0 0 chr1 78337422 78337463 -118857969 + AT_rich Low_complexity Low_complexity 1 41 0 6 1182 208 346 82 82 chr1 78338087 78338257 -118857175 - MIR SINE MIR -3 259 90 6 1182 190 347 30 50 chr1 78338291 78338391 -118857041 + MER5B DNA MER1_type 64 161 -17 6 1182 417 278 34 17 chr1 78338944 78339061 -118856371 - PB1D9 SINE Alu -1 119 1 6 1182 719 288 45 0 chr1 78339061 78339143 -118856289 - B4 SINE B4 -200 92 3 6 1182 304 264 51 102 chr1 78339266 78339384 -118856048 + PB1D10 SINE Alu 3 114 -3 6 1182 819 328 121 22 chr1 78339409 78339864 -118855568 + Lx8 LINE L1 6923 7422 -51 6 1182 423 291 154 14 chr1 78339968 78340111 -118855321 + RSINE1 SINE B4 3 165 0 6 1182 390 21 0 0 chr1 78340128 78340175 -118855257 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1182 513 245 136 19 chr1 78340336 78340490 -118854942 + MER3 DNA MER1_type 38 209 0 6 1182 885 117 0 0 chr1 78341073 78341210 -118854222 + (TCCCC)n Simple_repeat Simple_repeat 5 141 0 6 1182 284 113 38 0 chr1 78341231 78341284 -118854148 + CT-rich Low_complexity Low_complexity 3 57 0 6 1182 243 303 53 0 chr1 78341514 78341590 -118853842 - MER115 DNA Tip100 -475 218 139 6 1182 1250 98 17 0 chr1 78341947 78342120 -118853312 + B2_Mm2 SINE B2 1 176 -19 6 1182 251 199 111 6 chr1 78342122 78342284 -118853148 + (ACATG)n Simple_repeat Simple_repeat 2 180 0 6 1182 322 239 29 47 chr1 78342230 78342401 -118853031 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 6 1182 377 385 63 21 chr1 78342463 78342654 -118852778 - RMER15 LTR ERVL -14 561 363 6 1182 234 286 0 0 chr1 78342724 78342773 -118852659 - B4 SINE B4 -25 267 219 6 1182 242 68 45 0 chr1 78342787 78342831 -118852601 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 6 1182 479 218 209 8 chr1 78342845 78342979 -118852453 - B4 SINE B4 -69 223 63 6 1182 228 192 56 37 chr1 78343347 78343401 -118852031 - MER102c DNA MER1_type -190 141 87 6 1182 716 158 120 0 chr1 78343581 78343714 -118851718 - B1_Mur1 SINE Alu 0 149 1 6 1182 712 168 0 25 chr1 78345327 78345449 -118849983 + B1_Mus1 SINE Alu 30 148 0 6 1182 249 266 134 0 chr1 78346592 78346677 -118848755 + PB1 SINE Alu 2 97 -20 6 1182 183 42 0 0 chr1 78346683 78346707 -118848725 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1182 229 145 16 16 chr1 78346728 78346791 -118848641 + GA-rich Low_complexity Low_complexity 3 65 0 6 1182 269 241 61 37 chr1 78346794 78346876 -118848556 + BC1_Mm scRNA scRNA 2 85 -67 6 1182 330 26 0 0 chr1 78346977 78347016 -118848416 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1182 675 243 66 40 chr1 78347097 78347324 -118848108 - MER121 Unknown Unknown -176 236 4 6 1182 323 130 103 115 chr1 78348158 78348245 -118847187 + RLTR25B LTR ERVK 424 509 -519 6 1182 881 52 0 17 chr1 78348173 78348279 -118847153 + B1_Mus2 SINE Alu 33 138 -9 6 1182 378 0 0 0 chr1 78348279 78348321 -118847111 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1182 808 118 7 7 chr1 78348331 78348468 -118846964 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 6 1182 1656 36 0 10 chr1 78348735 78348930 -118846502 + B2_Mm1a SINE B2 1 193 0 6 1182 333 125 0 0 chr1 78349029 78349077 -118846355 + B1F SINE Alu 67 114 -35 6 1182 434 218 100 118 chr1 78349469 78349767 -118845665 + RMER4B LTR ERVK 333 588 -23 6 1182 325 221 252 30 chr1 78350800 78350935 -118844497 + MER5A1 DNA MER1_type 1 165 -1 6 1182 189 0 0 0 chr1 78351023 78351044 -118844388 + (CAT)n Simple_repeat Simple_repeat 2 22 0 6 1182 229 214 109 87 chr1 78351666 78351758 -118843674 + PB1D7 SINE Alu 4 97 -23 6 1182 233 284 48 36 chr1 78351971 78352055 -118843377 - Charlie13a DNA Charlie -540 974 890 6 1182 311 269 97 40 chr1 78352992 78353159 -118842273 - RSINE1 SINE B4 0 292 87 6 1182 1948 159 107 21 chr1 78353201 78353574 -118841858 - MTB_Mm LTR MaLR 0 407 3 6 1182 343 247 45 34 chr1 78353589 78353677 -118841755 - B4A SINE B4 -202 90 2 6 1182 446 221 68 83 chr1 78354710 78354843 -118840589 + B1F1 SINE Alu 13 143 -6 6 1182 204 97 0 0 chr1 78354882 78354913 -118840519 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1182 875 256 159 36 chr1 78354989 78355353 -118840079 - MTE2a LTR MaLR -14 405 12 6 1182 913 279 17 77 chr1 78355594 78355893 -118839539 - MLT1D LTR MaLR -4 501 221 6 1182 347 310 73 40 chr1 78356023 78356174 -118839258 - MLT1D LTR MaLR -307 198 43 6 1182 344 256 13 0 chr1 78356193 78356271 -118839161 + 5S rRNA rRNA 9 87 -34 6 1182 1440 124 4 51 chr1 78357265 78357502 -118837930 + URR1A DNA MER1_type 1 226 0 6 1182 185 0 40 0 chr1 78357627 78357652 -118837780 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1182 228 196 214 0 chr1 78357667 78357723 -118837709 - B4A SINE B4 -2 290 223 6 1182 252 0 0 0 chr1 78357725 78357753 -118837679 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1182 328 250 170 0 chr1 78357863 78357963 -118837469 - PB1D10 SINE Alu 0 117 1 6 1182 769 203 21 0 chr1 78358532 78358675 -118836757 - B1_Mur1 SINE Alu 0 149 4 6 1182 285 271 0 41 chr1 78358676 78358749 -118836683 + ID4 SINE ID 14 83 0 6 1182 596 300 12 0 chr1 78358827 78358987 -118836445 - RSINE1 SINE B4 -2 163 2 6 1182 323 143 0 31 chr1 78361294 78361359 -118834073 + C-rich Low_complexity Low_complexity 2 64 0 6 1182 468 0 0 0 chr1 78361420 78361472 -118833960 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1182 1258 195 207 50 chr1 78361552 78361914 -118833518 - MTD LTR MaLR 0 419 1 6 1182 287 337 71 0 chr1 78361904 78362002 -118833430 + PB1D7 SINE Alu 1 105 -15 6 1182 533 301 0 28 chr1 78362002 78362183 -118833249 + G-rich Low_complexity Low_complexity 1 176 0 6 1182 532 283 9 0 chr1 78362513 78362626 -118832806 + PB1D7 SINE Alu 1 114 -6 6 1182 228 337 58 19 chr1 78362980 78363083 -118832349 - RLTR15 LTR ERVK -151 208 102 6 1182 270 299 60 0 chr1 78363207 78363274 -118832158 + B1F SINE Alu 1 71 -78 6 1182 205 152 43 0 chr1 78363291 78363337 -118832095 + A-rich Low_complexity Low_complexity 2 49 0 6 1182 197 231 0 0 chr1 78363407 78363446 -118831986 - L2c LINE L2 -20 3367 3329 7 1182 234 226 119 35 chr1 78363449 78363547 -118831885 - MIR SINE MIR -116 152 45 7 1182 329 242 8 64 chr1 78365072 78365215 -118830217 + ID4 SINE ID 1 129 -23 7 1182 719 293 66 70 chr1 78365827 78366113 -118829319 + B4A SINE B4 8 292 0 7 1182 215 216 0 0 chr1 78366116 78366153 -118829279 + (CATG)n Simple_repeat Simple_repeat 3 39 0 7 1182 609 261 243 25 chr1 78366820 78367105 -118828327 + MTD LTR MaLR 1 347 -72 7 1182 393 22 0 0 chr1 78367583 78367629 -118827803 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7 1182 229 328 88 44 chr1 78367934 78368001 -118827431 - ID_B1 SINE B4 -78 146 7 7 1182 323 254 15 0 chr1 78368001 78368068 -118827364 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 7 1182 423 272 9 17 chr1 78368869 78368985 -118826447 - PB1D10 SINE Alu -1 116 2 7 1182 407 19 19 0 chr1 78369849 78369901 -118825531 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1182 455 261 14 97 chr1 78369903 78370011 -118825421 - RSINE1 SINE B4 -33 132 32 7 1182 1333 162 9 0 chr1 78370011 78370233 -118825199 + URR1B DNA MER1_type 2 225 0 7 1182 455 261 14 97 chr1 78370233 78370268 -118825164 - RSINE1 SINE B4 -134 31 1 7 1182 641 277 45 0 chr1 78370454 78370609 -118824823 - RSINE1 SINE B4 0 165 4 7 1182 250 275 43 0 chr1 78370811 78370880 -118824552 - ID4 SINE ID -11 72 1 7 1182 786 124 13 7 chr1 78371510 78371664 -118823768 + (TC)n Simple_repeat Simple_repeat 2 156 0 7 1182 516 16 0 0 chr1 78371939 78372000 -118823432 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1182 194 274 32 16 chr1 78372430 78372493 -118822939 + MIR3 SINE MIR 105 168 -40 7 1182 396 0 0 0 chr1 78372651 78372695 -118822737 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1182 472 288 8 0 chr1 78372786 78372904 -118822528 + ID_B1 SINE B4 105 223 -1 7 1182 721 186 8 0 chr1 78374716 78374840 -118820592 + B1F2 SINE Alu 22 146 -3 7 1182 1025 77 0 40 chr1 78375777 78375926 -118819506 + B1_Mus2 SINE Alu 5 147 0 7 1182 209 160 20 20 chr1 78376001 78376052 -118819380 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1182 24 32 0 0 chr1 78376865 78376896 -118818536 + AT_rich Low_complexity Low_complexity 1 31 0 7 1182 718 271 142 0 chr1 78376935 78377175 -118818257 + B4A SINE B4 1 274 -18 7 1182 208 227 0 85 chr1 78377196 78377278 -118818154 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 7 1182 219 196 0 51 chr1 78377213 78377272 -118818160 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1182 321 26 0 0 chr1 78379518 78379556 -118815876 + (CAG)n Simple_repeat Simple_repeat 2 39 0 7 1182 813 162 14 22 chr1 78379564 78379703 -118815729 + B1_Mur2 SINE Alu 1 138 -11 7 1182 1081 299 7 7 chr1 78379737 78380027 -118815405 + B4A SINE B4 1 290 -2 7 1183 1922 144 31 6 chr1 78381158 78381479 -118813953 - ORR1B2 LTR MaLR -38 329 1 7 1183 896 290 25 91 chr1 78381897 78382182 -118813250 + B4A SINE B4 19 284 -8 7 1183 207 241 35 0 chr1 78382226 78382284 -118813148 + GA-rich Low_complexity Low_complexity 2 61 0 7 1183 2242 278 62 67 chr1 78382607 78383551 -118811881 - L1MC1 LINE L1 -2 6331 5392 7 1183 474 211 0 46 chr1 78383615 78383717 -118811715 + B3A SINE B2 60 156 -60 7 1183 417 20 0 0 chr1 78383717 78383767 -118811665 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1183 722 313 91 37 chr1 78383783 78384344 -118811088 - L1ME1 LINE L1 -153 6026 5436 7 1183 246 262 11 87 chr1 78384532 78384624 -118810808 - MTEb LTR MaLR -9 365 281 7 1183 267 200 11 56 chr1 78385922 78386046 -118809386 + GA-rich Low_complexity Low_complexity 1 118 0 7 1183 1145 106 0 6 chr1 78386046 78386227 -118809205 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 7 1183 233 336 7 72 chr1 78386227 78386240 -118809192 + polypurine Low_complexity Low_complexity 117 129 0 7 1183 583 252 26 0 chr1 78386474 78386654 -118808778 + B3 SINE B2 2 195 -3 7 1183 212 328 17 0 chr1 78386843 78386901 -118808531 + B4A SINE B4 1 59 -233 7 1183 572 211 18 0 chr1 78389114 78389228 -118806204 + PB1D10 SINE Alu 2 117 0 7 1183 220 300 43 52 chr1 78389643 78389759 -118805673 + PB1D10 SINE Alu 3 117 0 7 1183 414 0 0 0 chr1 78389807 78389853 -118805579 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1183 288 0 0 0 chr1 78389853 78389884 -118805548 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1183 268 266 0 0 chr1 78390112 78390176 -118805256 + PB1 SINE Alu 1 64 -63 7 1183 216 351 14 0 chr1 78390635 78390709 -118804723 + ID SINE ID 7 81 -143 7 1183 212 130 22 0 chr1 78390709 78390755 -118804677 + (CAAT)n Simple_repeat Simple_repeat 4 50 0 7 1183 315 273 113 8 chr1 78390807 78390940 -118804492 + ID_B1 SINE B4 78 224 0 7 1183 614 317 36 99 chr1 78390988 78391352 -118804080 - ORR1E LTR MaLR -15 344 4 7 1183 670 246 35 39 chr1 78392069 78392272 -118803160 + ID_B1 SINE B4 3 204 -20 7 1183 218 338 78 0 chr1 78393233 78393310 -118802122 - L2b LINE L2 -84 3291 3209 7 1183 651 309 56 38 chr1 78393448 78393611 -118801821 - Lx8 LINE L1 0 7473 7306 7 1183 2418 68 3 77 chr1 78393611 78393963 -118801469 + ORR1A3 LTR MaLR 1 326 0 7 1183 651 309 56 38 chr1 78393963 78394118 -118801314 - Lx8 LINE L1 -168 7305 7149 7 1183 689 215 12 58 chr1 78394146 78394319 -118801113 + L1MB3 LINE L1 5681 5845 -338 7 1183 266 193 193 0 chr1 78394366 78394449 -118800983 + L1MB3 LINE L1 6049 6147 -36 7 1183 525 241 147 49 chr1 78394497 78394763 -118800669 + B4 SINE B4 1 292 0 7 1183 1066 80 0 20 chr1 78394778 78395032 -118800400 + (CA)n Simple_repeat Simple_repeat 1 248 0 7 1183 417 198 0 0 chr1 78397471 78397557 -118797875 + (TA)n Simple_repeat Simple_repeat 1 86 0 7 1183 326 267 178 0 chr1 78398678 78398779 -118796653 - PB1 SINE Alu -7 120 2 7 1183 287 321 82 0 chr1 78398783 78398917 -118796515 - L1M5 LINE L1 -424 5816 5672 7 1183 495 264 152 45 chr1 78399121 78399502 -118795930 - L1M5 LINE L1 -748 5398 4977 7 1183 1305 165 4 9 chr1 78400055 78400281 -118795151 + URR1A DNA MER1_type 2 226 0 7 1183 259 274 73 49 chr1 78400880 78401003 -118794429 + MER5A1 DNA MER1_type 38 163 -3 7 1183 582 328 26 9 chr1 78401622 78401849 -118793583 + B4A SINE B4 2 232 -60 7 1183 481 311 15 0 chr1 78401849 78401984 -118793448 + B3A SINE B2 2 138 -60 7 1183 375 127 0 0 chr1 78401988 78402051 -118793381 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1183 850 252 19 0 chr1 78402286 78402492 -118792940 - B3 SINE B2 -5 211 2 7 1183 24 32 0 0 chr1 78402668 78402699 -118792733 + AT_rich Low_complexity Low_complexity 1 31 0 7 1183 1392 211 20 32 chr1 78402701 78403044 -118792388 - Lx7 LINE L1 0 7696 7358 7 1183 378 197 12 25 chr1 78403054 78403215 -118792217 + (TA)n Simple_repeat Simple_repeat 1 159 0 7 1183 1710 223 116 23 chr1 78403215 78403688 -118791744 - Lx7 LINE L1 -346 7350 6834 7 1183 3965 206 51 12 chr1 78403690 78404527 -118790905 - Lx7 LINE L1 -1097 6599 5730 7 1183 402 272 24 8 chr1 78404921 78405047 -118790385 - ID_B1 SINE B4 -7 217 90 7 1183 350 267 30 11 chr1 78405765 78405873 -118789559 - PB1D7 SINE Alu -9 111 1 7 1183 476 289 120 15 chr1 78406738 78406938 -118788494 - L1MA4 LINE L1 -370 5930 5710 7 1183 308 220 0 0 chr1 78407000 78407059 -118788373 + ID_B1 SINE B4 112 170 -54 7 1183 253 262 11 35 chr1 78407059 78407087 -118788345 + PB1D10 SINE Alu 31 115 -2 7 1183 390 21 0 0 chr1 78407243 78407290 -118788142 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1183 378 0 0 0 chr1 78407431 78407473 -118787959 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1183 612 0 0 0 chr1 78407585 78407653 -118787779 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 7 1183 587 302 36 16 chr1 78407653 78407845 -118787587 - ID_B1 SINE B4 -12 212 17 7 1183 215 205 0 0 chr1 78408305 78408344 -118787088 + PB1D7 SINE Alu 77 115 -5 7 1183 1318 247 64 13 chr1 78409155 78409528 -118785904 + Lx8 LINE L1 6829 7220 -253 7 1183 342 264 99 15 chr1 78409530 78409549 -118785883 - ID_B1 SINE B4 -1 223 82 7 1183 582 150 26 0 chr1 78409549 78409661 -118785771 - B1_Mur2 SINE Alu -30 119 1 7 1183 454 234 24 112 chr1 78411620 78411745 -118783687 - PB1D10 SINE Alu -6 114 1 7 1183 454 262 120 33 chr1 78411991 78412141 -118783291 + RSINE1 SINE B4 2 164 -1 7 1183 26 0 0 0 chr1 78412186 78412212 -118783220 + AT_rich Low_complexity Low_complexity 1 26 0 7 1183 1687 26 5 0 chr1 78412213 78412405 -118783027 - B2_Mm1t SINE B2 0 193 1 7 1183 822 269 11 79 chr1 78412504 78412859 -118782573 - L1MD1 LINE L1 -258 5984 5654 7 1183 183 42 0 0 chr1 78413074 78413098 -118782334 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1183 770 106 63 24 chr1 78415465 78415591 -118779841 + B1_Mus2 SINE Alu 17 147 0 7 1183 631 296 65 25 chr1 78417847 78418124 -118777308 - B4A SINE B4 0 292 5 7 1183 602 335 37 71 chr1 78419798 78420123 -118775309 - MLT1A LTR MaLR -8 366 53 7 1183 619 225 93 0 chr1 78420487 78420638 -118774794 - B3 SINE B2 -51 165 1 7 1183 272 212 71 48 chr1 78420854 78420938 -118774494 - L1M3 LINE L1 -575 5605 5520 7 1183 620 219 55 85 chr1 78420980 78421145 -118774287 - B3 SINE B2 -4 212 53 7 1183 249 282 13 0 chr1 78421265 78421343 -118774089 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1183 531 0 0 0 chr1 78423385 78423444 -118771988 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 7 1183 1246 229 83 119 chr1 78424646 78425126 -118770306 - RMER5 LTR ERV1 -64 470 8 7 1183 345 140 0 0 chr1 78426170 78426227 -118769205 + (GGA)n Simple_repeat Simple_repeat 2 58 0 7 1183 353 167 13 0 chr1 78426482 78426560 -118768872 + GA-rich Low_complexity Low_complexity 3 81 0 7 1183 198 0 0 0 chr1 78426763 78426785 -118768647 + (C)n Simple_repeat Simple_repeat 1 22 0 8 1183 210 111 22 22 chr1 78428042 78428088 -118767344 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 8 1183 752 191 171 52 chr1 78428562 78428755 -118766677 - B3 SINE B2 0 216 1 8 1183 297 261 67 22 chr1 78429241 78429331 -118766101 + PB1D10 SINE Alu 23 116 -1 8 1183 975 25 0 0 chr1 78429430 78429548 -118765884 + (GA)n Simple_repeat Simple_repeat 1 118 0 8 1183 207 0 0 0 chr1 78430719 78430742 -118764690 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1183 1158 51 0 0 chr1 78430742 78430879 -118764553 - B1_Mus2 SINE Alu -10 137 1 8 1183 1895 100 12 49 chr1 78431416 78431704 -118763728 + ORR1A4 LTR MaLR 1 282 -47 8 1183 1373 59 20 46 chr1 78431704 78431899 -118763533 + B2_Mm2 SINE B2 1 190 -5 8 1183 1895 100 12 49 chr1 78431899 78431936 -118763496 + ORR1A4 LTR MaLR 283 314 -15 8 1183 504 248 0 9 chr1 78432844 78432958 -118762474 + PB1D10 SINE Alu 1 113 -4 8 1183 198 0 0 0 chr1 78432967 78432989 -118762443 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1183 195 42 0 0 chr1 78432989 78433013 -118762419 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1183 378 222 0 0 chr1 78433350 78433422 -118762010 + ID4 SINE ID 2 73 -10 8 1183 356 254 29 0 chr1 78433538 78433663 -118761769 + L1MD3 LINE L1 6643 6814 -1181 8 1183 268 151 253 11 chr1 78433945 78434032 -118761400 + PB1D10 SINE Alu 10 117 0 8 1183 264 280 167 28 chr1 78434037 78434217 -118761215 + MER106B DNA MER1_type 292 496 -563 8 1183 853 54 0 0 chr1 78434276 78434388 -118761044 - B1_Mm SINE Alu -34 113 2 8 1183 416 209 7 122 chr1 78434388 78434424 -118761008 - MT2B LTR ERVL -448 153 135 8 1183 373 310 26 0 chr1 78434478 78434591 -118760841 + ID_B1 SINE B4 2 117 -107 8 1183 374 255 37 19 chr1 78434613 78434721 -118760711 + RSINE1 SINE B4 20 129 -36 8 1183 336 247 45 0 chr1 78434777 78434866 -118760566 + ID_B1 SINE B4 132 224 0 8 1183 387 189 113 17 chr1 78434990 78435107 -118760325 + L1MA6 LINE L1 5810 5937 -234 8 1183 244 214 0 0 chr1 78435268 78435310 -118760122 + ID4 SINE ID 25 66 -17 8 1183 249 271 94 0 chr1 78435356 78435452 -118759980 + MER106B DNA MER1_type 906 1010 -49 8 1183 21 0 0 0 chr1 78435875 78435896 -118759536 + AT_rich Low_complexity Low_complexity 1 21 0 8 1183 366 80 0 0 chr1 78437790 78437840 -118757592 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1183 210 323 21 0 chr1 78437850 78437943 -118757489 + PB1D10 SINE Alu 21 115 -2 8 1183 504 82 0 0 chr1 78437948 78438021 -118757411 + B1_Mus1 SINE Alu 1 73 -75 8 1183 595 227 42 0 chr1 78438184 78438303 -118757129 + B1_Mur2 SINE Alu 6 129 -20 8 1183 397 212 68 39 chr1 78438309 78438412 -118757020 + B1_Mur4 SINE Alu 1 106 -44 8 1183 639 227 167 22 chr1 78441206 78441386 -118754046 + B3 SINE B2 1 206 -10 8 1183 892 164 0 0 chr1 78441979 78442119 -118753313 + B1_Mur3 SINE Alu 5 144 -5 8 1183 190 244 110 0 chr1 78442999 78443081 -118752351 - MIRb SINE MIR -173 95 5 8 1183 23 0 0 0 chr1 78443245 78443268 -118752164 + AT_rich Low_complexity Low_complexity 1 23 0 8 1183 510 17 0 0 chr1 78443749 78443808 -118751624 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1183 360 247 0 10 chr1 78444261 78444359 -118751073 + ID_B1 SINE B4 128 224 0 8 1183 298 202 289 0 chr1 78445563 78445667 -118749765 + B1_Mur1 SINE Alu 11 144 -5 8 1183 198 0 0 0 chr1 78445873 78445895 -118749537 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 8 1183 487 320 0 0 chr1 78448626 78448773 -118746659 - B4A SINE B4 -116 176 30 8 1183 249 272 136 0 chr1 78449711 78449814 -118745618 - MIR SINE MIR -23 239 123 8 1183 190 231 0 0 chr1 78451760 78451799 -118743633 - L4 LINE RTE -8 2021 1983 8 1183 195 139 0 0 chr1 78451952 78451988 -118743444 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 8 1183 306 294 9 32 chr1 78452088 78452205 -118743227 + B1F SINE Alu 1 118 -31 8 1183 355 206 82 0 chr1 78452558 78452631 -118742801 - RSINE1 SINE B4 -78 87 9 8 1183 1655 204 25 31 chr1 78452672 78453031 -118742401 - MTD LTR MaLR -8 411 55 8 1183 240 242 293 0 chr1 78453162 78453261 -118742171 + L1MC5 LINE L1 7298 7425 -536 8 1183 571 118 20 0 chr1 78454673 78454775 -118740657 + L1_Mus3 LINE L1 6532 6635 -3 8 1183 332 214 0 45 chr1 78454786 78454874 -118740558 + B1F SINE Alu 65 148 -1 8 1183 32 0 0 0 chr1 78454874 78454906 -118740526 + AT_rich Low_complexity Low_complexity 1 32 0 8 1183 819 161 0 0 chr1 78456778 78456908 -118738524 + B1_Mus1 SINE Alu 1 130 -18 8 1183 249 33 0 0 chr1 78456915 78456945 -118738487 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 8 1183 723 197 179 6 chr1 78457188 78457367 -118738065 - B3 SINE B2 -6 210 1 8 1183 626 269 19 0 chr1 78460122 78460282 -118735150 + RSINE1 SINE B4 3 165 0 8 1183 371 237 10 49 chr1 78460309 78460411 -118735021 - BC1_Mm scRNA scRNA -54 98 1 8 1183 226 71 22 87 chr1 78460491 78460537 -118734895 + L1MD LINE L1 3583 3625 -2521 8 1183 1142 83 0 0 chr1 78460859 78461004 -118734428 - B1_Mus1 SINE Alu -3 145 1 8 1183 21 36 0 0 chr1 78461238 78461266 -118734166 + AT_rich Low_complexity Low_complexity 1 28 0 8 1183 667 257 17 22 chr1 78461325 78461504 -118733928 + B3 SINE B2 37 214 -2 8 1183 21 36 0 0 chr1 78461504 78461532 -118733900 + AT_rich Low_complexity Low_complexity 1 28 0 8 1183 314 255 64 0 chr1 78461580 78461674 -118733758 + PB1D10 SINE Alu 18 117 0 8 1183 207 220 0 0 chr1 78461973 78462023 -118733409 + CT-rich Low_complexity Low_complexity 2 51 0 8 1183 656 241 6 47 chr1 78462242 78462412 -118733020 + RSINE1 SINE B4 3 165 0 8 1183 278 271 132 105 chr1 78462412 78462426 -118733006 + B3A SINE B2 48 195 -3 8 1183 651 200 118 32 chr1 78462656 78462842 -118732590 + B3 SINE B2 12 213 -3 8 1183 282 281 24 12 chr1 78463018 78463101 -118732331 + B1F SINE Alu 64 147 -2 8 1183 243 61 0 0 chr1 78463492 78463525 -118731907 + (CCA)n Simple_repeat Simple_repeat 1 33 0 8 1183 290 337 42 0 chr1 78464410 78464505 -118730927 - B3 SINE B2 -7 209 111 8 1183 338 350 82 5 chr1 78464929 78465124 -118730308 + MIR SINE MIR 31 240 -22 8 1183 432 274 0 17 chr1 78465190 78465305 -118730127 + B3 SINE B2 101 213 -3 8 1183 429 205 97 57 chr1 78465604 78465728 -118729704 - Lx5 LINE L1 -250 6800 6672 8 1183 532 227 124 8 chr1 78466041 78466170 -118729262 - B1F SINE Alu 0 149 6 8 1183 453 324 0 7 chr1 78466213 78466350 -118729082 - RSINE1 SINE B4 -29 136 1 8 1183 529 216 8 25 chr1 78466432 78466551 -118728881 + B1_Mur3 SINE Alu 32 148 -1 8 1183 231 241 146 22 chr1 78466975 78467064 -118728368 + RSINE1 SINE B4 33 132 -33 8 1183 39 32 0 16 chr1 78467278 78467314 -118728118 + AT_rich Low_complexity Low_complexity 1 36 0 8 1183 836 241 61 10 chr1 78467314 78467511 -118727921 + B3 SINE B2 4 210 -6 8 1183 39 32 0 16 chr1 78467511 78467538 -118727894 + AT_rich Low_complexity Low_complexity 1 27 0 8 1183 21 36 0 0 chr1 78467828 78467856 -118727576 + AT_rich Low_complexity Low_complexity 1 28 0 8 1183 629 143 271 30 chr1 78468259 78468425 -118727007 - B3 SINE B2 -10 206 1 8 1183 426 297 38 31 chr1 78468800 78468960 -118726472 + RSINE1 SINE B4 5 165 0 8 1183 32 0 0 0 chr1 78469017 78469049 -118726383 + AT_rich Low_complexity Low_complexity 1 32 0 8 1183 23 0 0 0 chr1 78469287 78469310 -118726122 + AT_rich Low_complexity Low_complexity 1 23 0 8 1183 339 266 11 0 chr1 78469558 78469652 -118725780 + BC1_Mm scRNA scRNA 4 98 -54 8 1183 388 202 9 19 chr1 78469852 78469958 -118725474 + GA-rich Low_complexity Low_complexity 4 108 0 8 1183 1085 101 0 4 chr1 78470402 78470633 -118724799 + (CA)n Simple_repeat Simple_repeat 1 229 0 8 1183 383 279 132 0 chr1 78470835 78470964 -118724468 - B1F2 SINE Alu -3 146 1 8 1183 320 159 0 45 chr1 78470988 78471054 -118724378 - PB1D9 SINE Alu -7 113 51 8 1183 549 0 0 0 chr1 78471304 78471365 -118724067 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 8 1183 1516 62 0 35 chr1 78471720 78471920 -118723512 + B2_Mm1t SINE B2 1 193 0 8 1183 250 106 21 0 chr1 78472109 78472156 -118723276 - B3A SINE B2 -150 48 1 8 1183 1019 215 96 52 chr1 78472328 78472672 -118722760 + ORR1C2 LTR MaLR 18 376 -8 8 1183 1243 94 33 0 chr1 78473121 78473301 -118722131 - B2_Mm1t SINE B2 -7 186 1 8 1183 492 263 0 89 chr1 78473530 78473639 -118721793 - ID_B1 SINE B4 -9 215 119 8 1183 2796 158 98 57 chr1 78473639 78474231 -118721201 - RLTR18 LTR ERVK 0 616 1 8 1183 492 263 0 89 chr1 78474231 78474267 -118721165 - ID_B1 SINE B4 -106 118 83 8 1183 1207 191 0 23 chr1 78474381 78474595 -118720837 - B3 SINE B2 -7 209 1 8 1183 494 267 0 2 chr1 78475591 78475710 -118719722 + B1F2 SINE Alu 6 122 -27 8 1183 226 167 0 23 chr1 78477930 78477973 -118717459 + GA-rich Low_complexity Low_complexity 2 43 0 8 1183 859 177 184 9 chr1 78478465 78478566 -118716866 + Lx9 LINE L1 7377 7478 -166 8 1183 360 0 0 0 chr1 78478566 78478606 -118716826 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1183 859 177 184 9 chr1 78478606 78478732 -118716700 + Lx9 LINE L1 7479 7643 -1 8 1183 218 260 48 72 chr1 78479904 78479987 -118715445 + ID4_ SINE ID 3 83 0 8 1183 196 343 40 93 chr1 78480027 78480178 -118715254 - L2c LINE L2 -4 3383 3241 8 1183 182 270 13 51 chr1 78480244 78480322 -118715110 - L2c LINE L2 -343 3044 2970 8 1183 353 209 94 9 chr1 78480510 78480616 -118714816 - B1F2 SINE Alu -2 147 33 8 1183 515 309 106 0 chr1 78480971 78481188 -118714244 + MLT1F1 LTR MaLR 330 569 0 9 1183 1655 248 151 27 chr1 78481520 78482195 -118713237 + MLT1F1-int LTR MaLR 399 1157 -332 9 1183 249 250 233 0 chr1 78482310 78482430 -118713002 + MLT1F1-int LTR MaLR 1327 1474 -15 9 1183 1006 177 70 0 chr1 78482711 78482897 -118712535 + B3 SINE B2 7 205 -11 9 1183 195 217 0 0 chr1 78483577 78483637 -118711795 + A-rich Low_complexity Low_complexity 1 60 0 9 1183 477 265 0 10 chr1 78484209 78484312 -118711120 + PB1D7 SINE Alu 17 118 -2 9 1183 243 263 12 50 chr1 78484866 78484887 -118710545 + B4A SINE B4 70 87 -205 9 1183 521 140 43 0 chr1 78484887 78484980 -118710452 + B1F1 SINE Alu 2 98 -51 9 1183 760 129 75 54 chr1 78485880 78486027 -118709405 - B1_Mur4 SINE Alu 0 150 1 9 1183 400 284 66 28 chr1 78486205 78486386 -118709046 + MLT1D LTR MaLR 5 192 -313 9 1183 363 279 85 8 chr1 78486430 78486560 -118708872 + MLT1D LTR MaLR 309 448 -57 9 1183 259 267 0 14 chr1 78486585 78486666 -118708766 - B1F SINE Alu -9 140 61 9 1183 423 193 0 12 chr1 78487682 78487766 -118707666 - MTEa-int LTR MaLR -1484 96 14 9 1183 839 255 100 67 chr1 78487767 78488128 -118707304 - MTEa LTR MaLR -6 373 1 9 1183 234 329 13 13 chr1 78488298 78488375 -118707057 + ID4_ SINE ID 3 79 -4 9 1183 679 237 161 3 chr1 78488407 78488723 -118706709 + MTE2a LTR MaLR 2 367 -12 9 1183 430 226 117 31 chr1 78488760 78488888 -118706544 - B1_Mur4 SINE Alu -6 144 6 9 1183 275 293 116 41 chr1 78488888 78488906 -118706526 - B4 SINE B4 -72 220 64 9 1183 25 51 0 0 chr1 78489095 78489134 -118706298 + AT_rich Low_complexity Low_complexity 1 39 0 9 1183 1337 63 6 11 chr1 78489185 78489362 -118706070 + B2_Mm2 SINE B2 5 180 -15 9 1183 13642 89 29 6 chr1 78489363 78492141 -118703291 + L1VL2 LINE L1 138 2984 -631 9 1183 201 172 0 79 chr1 78492726 78492772 -118702660 + A-rich Low_complexity Low_complexity 1 41 0 9 1183 1235 48 0 0 chr1 78492772 78492919 -118702513 + B1_Mus2 SINE Alu 1 147 0 9 1183 201 172 0 79 chr1 78492919 78492935 -118702497 + A-rich Low_complexity Low_complexity 42 57 0 9 1183 348 127 0 0 chr1 78492935 78492990 -118702442 + (GGA)n Simple_repeat Simple_repeat 2 56 0 9 1183 2374 204 21 39 chr1 78493533 78494098 -118701334 - RLTR1D LTR ERV1 -1 604 50 9 1183 20418 235 19 18 chr1 78494119 78500000 -118695432 - MMERGLN-int LTR ERV1 0 7778 1726 9 1183 5663 227 28 27 chr1 78500000 78501265 -118694167 - MMERGLN-int LTR ERV1 -5831 1725 460 1 1183 428 179 152 8 chr1 78501468 78501586 -118693846 + ORR1D1 LTR MaLR 1 135 -239 2 1183 306 106 0 0 chr1 78501905 78501952 -118693480 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 1183 405 90 15 0 chr1 78502428 78502495 -118692937 - Lx2 LINE L1 0 6997 6930 4 1183 444 289 0 8 chr1 78502588 78502710 -118692722 - RSINE1 SINE B4 -43 122 2 5 1183 343 256 78 0 chr1 78502727 78502817 -118692615 - PB1D9 SINE Alu -21 99 3 6 1183 294 259 73 9 chr1 78503432 78503541 -118691891 + MIRb SINE MIR 104 219 -49 7 1183 261 307 45 0 chr1 78504137 78504225 -118691207 - ID_B1 SINE B4 -5 219 128 8 1183 452 111 0 0 chr1 78504239 78504311 -118691121 - RMER10A LTR ERVL -17 425 354 9 1183 626 234 48 8 chr1 78504544 78504669 -118690763 + B1F1 SINE Alu 13 142 -7 1 1183 404 311 100 5 chr1 78504718 78504938 -118690494 + MER31A LTR ERV1 228 468 -17 1 1183 888 37 0 0 chr1 78505072 78505180 -118690252 + (GGAGA)n Simple_repeat Simple_repeat 2 109 0 1 1183 1610 195 21 46 chr1 78505183 78505571 -118689861 - RMER10A LTR ERVL -63 379 2 1 1183 219 238 0 0 chr1 78505571 78505612 -118689820 - ID_B1 SINE B4 -93 131 91 8 1183 823 196 7 0 chr1 78505830 78505978 -118689454 + B1_Mur1 SINE Alu 1 149 0 1 1183 703 239 68 6 chr1 78506087 78506264 -118689168 + B3 SINE B2 29 216 0 1 1183 254 137 0 19 chr1 78506656 78506668 -118688764 + polypyrimidine Low_complexity Low_complexity 44 54 0 1 1183 1136 79 11 11 chr1 78506668 78506848 -118688584 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1183 254 137 0 19 chr1 78506848 78506887 -118688545 + polypyrimidine Low_complexity Low_complexity 5 43 0 1 1183 854 106 0 32 chr1 78506888 78507073 -118688359 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1183 225 0 0 0 chr1 78507095 78507120 -118688312 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1183 499 251 144 44 chr1 78507512 78507762 -118687670 + B4 SINE B4 2 276 -16 2 1183 249 108 0 0 chr1 78508756 78508793 -118686639 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1183 850 189 17 0 chr1 78508795 78509070 -118686362 + CT-rich Low_complexity Low_complexity 1 279 0 2 1183 573 208 15 60 chr1 78509074 78509207 -118686225 - B1_Mur3 SINE Alu -21 128 2 2 1183 254 106 0 21 chr1 78509959 78510007 -118685425 + (TCC)n Simple_repeat Simple_repeat 2 48 0 2 1183 838 144 0 0 chr1 78510021 78510160 -118685272 - B1_Mus2 SINE Alu 0 147 9 2 1183 213 65 0 0 chr1 78511140 78511171 -118684261 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2 1183 444 255 108 0 chr1 78511180 78511282 -118684150 - PB1D7 SINE Alu -7 113 1 2 1183 4434 191 69 47 chr1 78511444 78511621 -118683811 - RMER1B Other Other 0 1066 885 2 1183 207 0 0 0 chr1 78511621 78511644 -118683788 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1183 4434 191 69 47 chr1 78511644 78511666 -118683766 - RMER1B Other Other -182 884 864 2 1183 1094 95 0 0 chr1 78511666 78511813 -118683619 - B1_Mus2 SINE Alu 0 147 1 3 147 4434 191 69 47 chr1 78511813 78512624 -118682808 - RMER1B Other Other -203 863 33 2 1184 2223 107 9 58 chr1 78512811 78513157 -118682275 - ORR1A4 LTR MaLR 0 329 1 3 1184 780 188 21 7 chr1 78513214 78513359 -118682073 - B1_Mus1 SINE Alu -1 147 1 3 1184 1024 158 65 11 chr1 78513402 78513587 -118681845 - MTC LTR MaLR -4 417 223 3 1184 597 73 0 0 chr1 78513613 78513695 -118681737 + MTC LTR MaLR 1 82 -339 3 1184 652 94 31 0 chr1 78513700 78513796 -118681636 - MTC LTR MaLR -243 178 80 3 1184 367 242 39 118 chr1 78513798 78513976 -118681456 - RSINE1 SINE B4 0 165 2 3 1184 331 332 91 19 chr1 78514045 78514309 -118681123 - L1M5 LINE L1 -604 5575 5293 3 1184 315 0 0 0 chr1 78514360 78514395 -118681037 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1184 251 146 18 0 chr1 78514396 78514451 -118680981 + GA-rich Low_complexity Low_complexity 2 57 0 3 1184 213 314 79 102 chr1 78514515 78514731 -118680701 - B4 SINE B4 -22 270 60 4 1184 664 254 13 27 chr1 78515252 78515402 -118680030 - B1F SINE Alu -1 148 1 4 1184 439 276 32 29 chr1 78515665 78515824 -118679608 + ID_B1 SINE B4 80 246 -46 4 1184 253 295 0 0 chr1 78515824 78515885 -118679547 + G-rich Low_complexity Low_complexity 1 61 0 4 1184 234 261 47 94 chr1 78515948 78516075 -118679357 - L1MC4 LINE L1 -10 8032 7912 4 1184 245 358 0 0 chr1 78516075 78516142 -118679290 + C-rich Low_complexity Low_complexity 1 67 0 4 1184 437 277 328 44 chr1 78516278 78516460 -118678972 - RMER5 LTR ERV1 -12 522 291 4 1184 234 0 0 0 chr1 78516460 78516486 -118678946 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 4 1184 437 313 29 50 chr1 78516486 78516709 -118678723 - RMER5 LTR ERV1 -244 290 70 4 1184 1093 171 154 8 chr1 78517452 78517699 -118677733 - ORR1B2 LTR MaLR 0 367 85 4 1184 2323 136 70 3 chr1 78517704 78518073 -118677359 - ORR1B1 LTR MaLR 0 394 1 4 1184 295 236 0 14 chr1 78518074 78518147 -118677285 - ORR1B1-int LTR MaLR -1 1369 1298 4 1184 719 130 0 47 chr1 78518309 78518438 -118676994 - B1_Mur1 SINE Alu 0 149 27 5 1184 924 243 144 10 chr1 78518443 78518740 -118676692 + ORR1D1 LTR MaLR 1 337 -37 5 1184 1095 96 0 0 chr1 78518740 78518897 -118676535 + B2_Mm2 SINE B2 2 158 -37 5 1184 434 18 18 0 chr1 78518898 78518953 -118676479 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 5 1184 272 208 0 0 chr1 78518999 78519052 -118676380 + ORR1D1 LTR MaLR 318 370 0 5 1184 299 222 65 22 chr1 78519533 78519625 -118675807 - MLT1A1 LTR MaLR 0 408 313 5 1184 263 290 35 53 chr1 78519785 78519898 -118675534 - MLT1A1 LTR MaLR -250 115 5 5 1184 243 204 0 0 chr1 78520936 78520990 -118674442 + GA-rich Low_complexity Low_complexity 2 55 0 5 1184 263 146 0 0 chr1 78520995 78521036 -118674396 + B1_Mus2 SINE Alu 82 122 -25 5 1184 1996 70 94 25 chr1 78521289 78521633 -118673799 - MT2C_Mm LTR ERVL 0 475 1 5 1184 243 115 104 0 chr1 78522362 78522418 -118673014 - PB1D7 SINE Alu -9 141 60 5 1184 576 42 0 0 chr1 78523622 78523693 -118671739 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 1184 296 271 56 9 chr1 78523828 78523936 -118671496 + B1F SINE Alu 22 134 -15 6 1184 933 89 20 20 chr1 78523945 78524094 -118671338 + B2_Mm2 SINE B2 42 190 -5 6 1184 783 180 29 0 chr1 78524343 78524482 -118670950 - B1F SINE Alu -5 144 2 6 1184 1244 261 24 39 chr1 78524895 78525278 -118670154 - MTEa LTR MaLR -1 378 2 6 1184 301 290 31 46 chr1 78525358 78525488 -118669944 + B4A SINE B4 3 130 -162 6 1184 309 325 45 53 chr1 78525407 78525540 -118669892 + B3A SINE B2 49 180 -18 6 1184 1134 176 71 5 chr1 78525941 78526152 -118669280 - URR1B DNA MER1_type 0 225 1 6 1184 808 188 28 11 chr1 78526442 78526620 -118668812 - RMER12 LTR ERVK 0 1322 1142 6 1184 334 148 16 16 chr1 78526693 78526755 -118668677 - RMER12 LTR ERVK -1260 62 1 6 1184 223 268 27 40 chr1 78526922 78526996 -118668436 + PB1D10 SINE Alu 18 90 -27 6 1184 874 62 331 0 chr1 78527164 78527309 -118668123 - B2_Mm2 SINE B2 -1 194 2 6 1184 354 215 43 11 chr1 78527375 78527469 -118667963 - ID_B1 SINE B4 -2 222 126 7 1184 1269 73 78 0 chr1 78528148 78528327 -118667105 + B2_Mm1a SINE B2 1 193 0 7 1184 426 261 24 56 chr1 78528403 78528529 -118666903 + B1F1 SINE Alu 15 136 -13 7 1184 233 279 44 0 chr1 78528525 78528593 -118666839 + ID4 SINE ID 11 81 -2 7 1184 518 256 8 17 chr1 78529367 78529486 -118665946 + PB1D9 SINE Alu 2 119 -1 7 1184 829 284 33 5 chr1 78529517 78529729 -118665703 + ID_B1 SINE B4 1 218 -6 7 1184 443 135 11 0 chr1 78529730 78529788 -118665644 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1184 435 38 0 0 chr1 78529788 78529841 -118665591 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1184 443 135 11 0 chr1 78529841 78529871 -118665561 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 1184 499 308 34 77 chr1 78530182 78530479 -118664953 - MER34 LTR ERV1 -247 324 33 7 1184 418 252 128 16 chr1 78530768 78530893 -118664539 + B1F1 SINE Alu 6 144 -5 8 1184 2081 103 3 0 chr1 78530986 78531296 -118664136 - ORR1A2 LTR MaLR -16 311 1 8 1184 252 0 0 0 chr1 78531690 78531718 -118663714 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1184 1143 35 13 40 chr1 78531727 78531877 -118663555 + B1_Mm SINE Alu 2 147 0 8 1184 398 176 24 0 chr1 78531901 78531986 -118663446 - RMER19B LTR ERVK -22 880 794 8 1184 416 247 11 0 chr1 78532984 78533081 -118662351 - ID_B1 SINE B4 -104 188 82 8 1184 430 324 125 5 chr1 78536026 78536234 -118659198 + B4 SINE B4 38 270 -22 8 1184 2784 55 8 20 chr1 78537062 78537075 -118658357 + MTB LTR MaLR 1 13 -387 8 1184 257 51 0 25 chr1 78537075 78537115 -118658317 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1184 1206 41 7 0 chr1 78537117 78537263 -118658169 - B1_Mus2 SINE Alu 0 147 1 8 1184 2784 55 8 20 chr1 78537263 78537637 -118657795 + MTB LTR MaLR 14 386 -14 8 1184 247 152 0 258 chr1 78537634 78537723 -118657709 - MTC LTR MaLR -355 66 1 9 1184 212 274 0 0 chr1 78537723 78537774 -118657658 - B4A SINE B4 -241 51 1 8 1184 274 206 206 0 chr1 78537776 78537849 -118657583 - ID_B1 SINE B4 -2 222 135 9 1184 212 268 43 118 chr1 78537849 78537869 -118657563 - PB1D10 SINE Alu -1 116 31 9 1184 728 249 0 19 chr1 78538057 78538217 -118657215 + ID_B1 SINE B4 9 165 -59 9 1184 979 148 124 0 chr1 78538182 78538392 -118657040 - ORR1B1 LTR MaLR -158 236 1 9 1184 1660 111 8 0 chr1 78539310 78539562 -118655870 - ORR1C1 LTR MaLR 0 378 125 9 1184 2650 111 92 49 chr1 78539562 78540061 -118655371 - RLTR13D1 LTR ERVK 0 806 284 9 1184 1647 37 5 0 chr1 78540061 78540252 -118655180 - B2_Mm1t SINE B2 0 193 2 9 1184 2650 237 63 125 chr1 78540252 78540663 -118654769 - RLTR13D1 LTR ERVK -451 404 10 9 1184 592 135 81 0 chr1 78540669 78540780 -118654652 - ORR1C1 LTR MaLR -258 120 1 9 1184 461 311 102 19 chr1 78540809 78541025 -118654407 - ORR1E LTR MaLR -120 239 6 9 1184 333 268 80 16 chr1 78541331 78541435 -118653997 - RSINE1 SINE B4 -9 283 78 1 1184 294 29 0 0 chr1 78541619 78541654 -118653778 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1184 561 312 102 38 chr1 78541664 78541986 -118653446 - Lx8 LINE L1 -126 7518 7049 1 1184 476 287 77 8 chr1 78542487 78542617 -118652815 + ID_B1 SINE B4 84 222 -2 1 1184 289 194 25 100 chr1 78542850 78542930 -118652502 - MER58B DNA MER1_type -221 120 47 1 1184 638 229 0 7 chr1 78543058 78543199 -118652233 + ID_B1 SINE B4 77 216 -8 1 1184 29 28 0 0 chr1 78543298 78543334 -118652098 + AT_rich Low_complexity Low_complexity 1 36 0 1 1184 1274 102 11 0 chr1 78543374 78543551 -118651881 - B2_Mm1a SINE B2 -14 179 1 1 1184 233 229 148 0 chr1 78543674 78543685 -118651747 + PB1D7 SINE Alu 51 120 0 1 1184 260 240 0 0 chr1 78543685 78543735 -118651697 + ID_B1 SINE B4 175 224 0 1 1184 293 293 106 14 chr1 78544108 78544250 -118651182 + HAL1 LINE L1 241 395 -2112 1 1184 1161 157 67 0 chr1 78544255 78544465 -118650967 - URR1A DNA MER1_type -2 224 1 1 1184 972 199 138 86 chr1 78544690 78545015 -118650417 + MTE2b LTR MaLR 30 371 -8 1 1184 537 198 27 0 chr1 78545199 78545310 -118650122 + B3A SINE B2 5 118 -80 1 1184 1309 259 21 46 chr1 78546173 78546459 -118648973 + MTE2a LTR MaLR 2 278 -101 1 1184 1507 152 120 33 chr1 78546459 78546758 -118648674 - ORR1A4 LTR MaLR 0 329 5 1 1184 1309 259 21 46 chr1 78546758 78546859 -118648573 + MTE2a LTR MaLR 279 379 0 1 1184 225 268 28 14 chr1 78546983 78547055 -118648377 + MIRm SINE MIR 84 156 -120 1 1184 241 314 92 37 chr1 78547282 78547391 -118648041 + PB1D10 SINE Alu 2 116 -1 1 1184 2638 209 63 51 chr1 78548072 78548663 -118646769 + L1_Rod LINE L1 859 1475 -4372 1 1184 1243 34 0 0 chr1 78548663 78548810 -118646622 + B1_Mm SINE Alu 1 147 0 1 1184 2638 193 34 102 chr1 78548810 78548848 -118646584 + L1_Rod LINE L1 1476 1480 -4367 1 1184 4732 128 17 23 chr1 78548848 78549597 -118645835 + Lx LINE L1 5908 6652 -2 1 1184 2638 193 34 102 chr1 78549597 78549628 -118645804 + L1_Rod LINE L1 1481 1485 -4362 1 1184 395 216 142 16 chr1 78549628 78549755 -118645677 + B1_Mus1 SINE Alu 1 143 -5 1 1184 2638 209 34 92 chr1 78549755 78550257 -118645175 + L1_Rod LINE L1 1204 1935 -3912 1 1184 941 106 44 0 chr1 78550257 78550417 -118645015 - URR1A DNA MER1_type -2 224 58 1 1184 447 211 9 35 chr1 78550430 78550543 -118644889 + L1_Rod LINE L1 1974 2083 -3764 1 1184 666 229 28 50 chr1 78550554 78550733 -118644699 + MTE2b LTR MaLR 205 379 0 1 1184 392 297 0 9 chr1 78550750 78550862 -118644570 + MTC LTR MaLR 1 111 -310 1 1184 682 298 90 26 chr1 78550845 78550972 -118644460 - MTEa LTR MaLR -112 267 146 1 1184 1922 174 129 56 chr1 78550972 78551491 -118643941 - RLTR31B_Mm LTR ERVK 0 557 1 1 1184 682 298 90 26 chr1 78551491 78551597 -118643835 - MTEa LTR MaLR -234 145 19 1 1184 2223 160 84 10 chr1 78551714 78552105 -118643327 + MTC LTR MaLR 2 421 0 1 1184 1075 150 31 0 chr1 78552279 78552472 -118642960 - URR1A DNA MER1_type 0 226 28 1 1184 313 333 69 0 chr1 78552882 78553026 -118642406 + RMER15 LTR ERVL 422 575 0 1 1184 409 279 8 23 chr1 78553161 78553293 -118642139 - MLT1C LTR MaLR -8 459 330 1 1184 592 298 46 37 chr1 78553439 78553655 -118641777 + MTEa LTR MaLR 1 218 -161 1 1184 2044 130 62 3 chr1 78553735 78554059 -118641373 + ORR1A1 LTR MaLR 1 343 -3 1 1184 895 152 79 39 chr1 78554065 78554243 -118641189 - B2_Mm2 SINE B2 -9 186 2 1 1184 290 238 44 77 chr1 78554249 78554340 -118641092 + MTEa LTR MaLR 284 371 -8 1 1184 2174 160 16 5 chr1 78554351 78554722 -118640710 + MTC LTR MaLR 3 377 -44 1 1184 1412 60 55 0 chr1 78555207 78555390 -118640042 - B2_Mm2 SINE B2 0 195 3 1 1184 266 222 36 24 chr1 78555553 78555636 -118639796 - MER5A1 DNA MER1_type -3 163 80 1 1184 750 235 39 20 chr1 78555657 78555861 -118639571 - MER3 DNA MER1_type 0 209 2 1 1184 310 280 75 0 chr1 78555867 78555974 -118639458 + MER5A DNA MER1_type 1 115 -74 1 1184 1845 197 104 21 chr1 78556006 78556427 -118639005 - RLTR19 LTR ERVK 0 499 44 1 1184 227 56 56 0 chr1 78557253 78557289 -118638143 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1184 267 316 59 53 chr1 78557757 78557780 -118637652 - L1MB3 LINE L1 -94 6084 6062 1 1184 2553 117 12 24 chr1 78557780 78558192 -118637240 - MTB_Mm LTR MaLR 0 407 1 1 1184 414 302 79 19 chr1 78558192 78558402 -118637030 - L1MB3 LINE L1 -117 6061 5836 1 1184 525 215 83 36 chr1 78558497 78558655 -118636777 - B4 SINE B4 -51 173 1 1 1184 262 200 29 58 chr1 78558661 78558730 -118636702 - L1MB3 LINE L1 -573 5601 5535 1 1184 458 300 39 15 chr1 78558868 78559071 -118636361 - MER110 LTR ERV1 -103 388 181 1 1184 203 146 40 40 chr1 78559198 78559248 -118636184 + T-rich Low_complexity Low_complexity 2 51 0 1 1184 348 24 0 0 chr1 78559281 78559322 -118636110 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1184 254 276 6 24 chr1 78559330 78559408 -118636024 - PB1D7 SINE Alu -71 76 1 1 1184 840 216 73 116 chr1 78560215 78560285 -118635147 + ORR1D2 LTR MaLR 81 149 -221 1 1184 1223 62 0 0 chr1 78560285 78560431 -118635001 + B1_Mus1 SINE Alu 3 148 0 1 1184 840 216 73 116 chr1 78560431 78560663 -118634769 + ORR1D2 LTR MaLR 150 370 0 1 1184 246 32 0 0 chr1 78560753 78560784 -118634648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1184 742 248 126 144 chr1 78560792 78561512 -118633920 - L1MB3 LINE L1 -858 5282 4576 1 1184 618 131 0 0 chr1 78561683 78561782 -118633650 + (A)n Simple_repeat Simple_repeat 1 99 0 1 1184 407 291 100 71 chr1 78561790 78561960 -118633472 + B3A SINE B2 1 175 -23 1 1184 814 281 102 41 chr1 78562507 78562861 -118632571 + MTE2a LTR MaLR 37 379 0 1 1184 1261 108 11 0 chr1 78563046 78563222 -118632210 + B2_Mm1t SINE B2 2 179 -14 1 1184 273 91 424 29 chr1 78563294 78563395 -118632037 + B2_Mm2 SINE B2 49 189 -6 1 1184 556 102 0 20 chr1 78563449 78563549 -118631883 + L1Md_F2 LINE L1 6484 6581 -1 1 1184 345 47 0 0 chr1 78563633 78563676 -118631756 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1184 392 253 128 49 chr1 78563763 78564029 -118631403 + MER33 DNA MER1_type 21 307 -17 1 1184 226 282 34 34 chr1 78564832 78564920 -118630512 + MER5B DNA MER1_type 5 92 -86 1 1184 303 267 0 0 chr1 78565432 78565447 -118629985 + B4A SINE B4 71 85 -207 1 1184 498 254 0 39 chr1 78565447 78565574 -118629858 + B1F1 SINE Alu 1 122 -27 1 1184 235 250 26 0 chr1 78565884 78565960 -118629472 - L1M1 LINE L1 -441 5862 5785 1 1184 443 216 89 25 chr1 78565960 78566117 -118629315 + MER2 DNA MER2_type 108 274 -71 1 1184 490 283 107 25 chr1 78566601 78566797 -118628635 + B4A SINE B4 1 212 -80 1 1184 364 325 8 8 chr1 78566871 78566998 -118628434 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 1184 180 97 0 0 chr1 78567535 78567566 -118627866 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1184 222 289 78 43 chr1 78567616 78567757 -118627675 + MIRb SINE MIR 114 259 -9 1 1184 352 224 50 10 chr1 78567910 78568009 -118627423 + B1F1 SINE Alu 47 149 0 1 1184 557 242 93 93 chr1 78568032 78568185 -118627247 + B3 SINE B2 2 163 -53 1 1184 207 0 0 0 chr1 78568185 78568208 -118627224 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1 1184 557 242 93 93 chr1 78568208 78568268 -118627164 + B3 SINE B2 164 215 -1 1 1184 1083 95 0 0 chr1 78568388 78568546 -118626886 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1 1184 398 267 12 17 chr1 78568735 78568870 -118626562 + B4 SINE B4 90 218 -74 1 1184 207 88 0 0 chr1 78568871 78568905 -118626527 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1184 275 304 12 12 chr1 78568905 78568985 -118626447 + GA-rich Low_complexity Low_complexity 2 81 0 1 1184 531 248 45 0 chr1 78570031 78570164 -118625268 - ID_B1 SINE B4 -2 222 84 1 1184 340 261 29 70 chr1 78571539 78571704 -118623728 + MLT1A LTR MaLR 1 161 -213 1 1184 236 310 59 88 chr1 78571714 78571884 -118623548 + Arthur1 DNA Tip100 117 281 -3666 1 1184 985 116 13 27 chr1 78572143 78572157 -118623275 - B1_Mus1 SINE Alu 0 148 138 1 1184 342 0 0 0 chr1 78572157 78572195 -118623237 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1184 985 116 13 27 chr1 78572195 78572330 -118623102 - B1_Mus1 SINE Alu -11 137 1 1 1184 632 203 8 8 chr1 78572367 78572496 -118622936 - B1_Mur3 SINE Alu -1 148 20 1 1184 483 282 0 47 chr1 78574746 78574895 -118620537 + ID_B1 SINE B4 83 224 0 1 1184 615 27 0 0 chr1 78574923 78574996 -118620436 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 1 1184 535 317 43 43 chr1 78575050 78575330 -118620102 + B4A SINE B4 2 281 -11 1 1184 245 263 160 50 chr1 78575426 78575526 -118619906 - LTR29 LTR ERV1 -445 177 67 1 1184 330 247 11 69 chr1 78575583 78575670 -118619762 + ID4_ SINE ID 1 82 -1 1 1184 230 284 48 24 chr1 78575697 78575748 -118619684 + BC1_Mm scRNA scRNA 14 68 -84 1 1184 5719 119 52 18 chr1 78575748 78576675 -118618757 + RMER17B LTR ERVK 1 958 0 1 1184 230 284 48 24 chr1 78576675 78576706 -118618726 + BC1_Mm scRNA scRNA 69 98 -54 1 1184 245 169 0 17 chr1 78576706 78576766 -118618666 + GA-rich Low_complexity Low_complexity 2 60 0 1 1184 236 279 24 60 chr1 78576779 78576863 -118618569 + ID4_ SINE ID 3 83 0 1 1184 599 140 0 8 chr1 78577095 78577225 -118618207 + (GA)n Simple_repeat Simple_repeat 2 130 0 1 1184 264 270 95 75 chr1 78577298 78577379 -118618053 - RMER10A LTR ERVL -221 221 134 1 1184 795 31 0 0 chr1 78577379 78577477 -118617955 + (GAGAA)n Simple_repeat Simple_repeat 4 101 0 1 1184 264 270 95 75 chr1 78577477 78577595 -118617837 - RMER10A LTR ERVL -309 133 19 1 1184 1512 230 32 21 chr1 78577749 78578122 -118617310 + MTD LTR MaLR 27 403 -16 1 1184 231 292 46 109 chr1 78578285 78578523 -118616909 - B4 SINE B4 -69 223 1 1 1184 524 298 32 63 chr1 78578536 78578726 -118616706 - ID_B1 SINE B4 -20 204 21 1 1184 233 236 27 71 chr1 78579010 78579101 -118616331 - B1F SINE Alu 0 120 30 1 1184 1230 54 0 0 chr1 78579172 78579319 -118616113 + B1_Mus2 SINE Alu 1 147 0 1 1184 576 101 11 0 chr1 78579386 78579475 -118615957 + B2_Mm1t SINE B2 2 91 -102 1 1184 1209 84 0 0 chr1 78579478 78579645 -118615787 + (TTTC)n Simple_repeat Simple_repeat 3 169 0 1 1184 936 162 0 0 chr1 78579645 78579812 -118615620 + CT-rich Low_complexity Low_complexity 3 169 0 2 1184 499 206 202 7 chr1 78579905 78580065 -118615367 + B3 SINE B2 11 179 -16 2 1184 1021 122 54 22 chr1 78580097 78580282 -118615150 - B2_Mm2 SINE B2 -4 191 1 2 1184 617 203 53 125 chr1 78581064 78581272 -118614160 + B3A SINE B2 1 193 -2 2 1184 1013 199 0 35 chr1 78581296 78581499 -118613933 - URR1B DNA MER1_type -29 196 1 2 1184 204 125 0 0 chr1 78581575 78581607 -118613825 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2 1184 259 296 0 14 chr1 78581615 78581687 -118613745 - ID4 SINE ID -11 72 2 2 1184 395 284 112 0 chr1 78581990 78582124 -118613308 - B1F SINE Alu 0 149 1 2 1184 821 167 14 0 chr1 78582152 78582290 -118613142 + B1_Mur4 SINE Alu 1 140 -10 2 1184 32 26 0 0 chr1 78582290 78582329 -118613103 + AT_rich Low_complexity Low_complexity 1 39 0 2 1184 576 234 94 40 chr1 78582581 78582804 -118612628 + MLT1B LTR MaLR 4 238 -152 2 1184 329 208 37 49 chr1 78582835 78582916 -118612516 + RSINE1 SINE B4 69 148 -17 2 1184 365 39 20 0 chr1 78582967 78583018 -118612414 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1184 952 89 27 0 chr1 78583058 78583204 -118612228 + B2_Mm2 SINE B2 32 181 -14 2 1184 335 108 371 29 chr1 78583255 78583360 -118612072 + B2_Mm2 SINE B2 47 187 -8 2 1184 528 236 19 65 chr1 78583560 78583714 -118611718 + B1F2 SINE Alu 2 148 -1 2 1184 500 227 71 0 chr1 78583978 78584102 -118611330 - B1F SINE Alu -13 136 5 2 1184 324 261 120 17 chr1 78584356 78584473 -118610959 + B1F1 SINE Alu 20 148 -1 2 1184 208 370 0 20 chr1 78584509 78584611 -118610821 + L3 LINE CR1 3570 3669 -820 2 1184 3819 145 92 91 chr1 78584721 78585626 -118609806 - RMER17A2 LTR ERVK 0 906 1 2 1184 363 312 16 8 chr1 78585740 78585866 -118609566 + ID_B1 SINE B4 91 217 -7 2 1184 485 188 10 40 chr1 78585893 78585993 -118609439 + B1_Mur1 SINE Alu 48 144 -5 2 1184 318 237 141 20 chr1 78585994 78586093 -118609339 + PB1D9 SINE Alu 1 111 -9 2 1184 2983 69 20 39 chr1 78586101 78586466 -118608966 + MTB LTR MaLR 1 362 -38 2 1184 1330 101 0 6 chr1 78586466 78586646 -118608786 - B2_Mm2 SINE B2 -15 180 2 2 1184 2983 69 20 39 chr1 78586646 78586687 -118608745 + MTB LTR MaLR 363 399 -1 2 1184 365 95 16 0 chr1 78586687 78586750 -118608682 + (CATA)n Simple_repeat Simple_repeat 4 67 0 2 1184 197 204 0 0 chr1 78587105 78587149 -118608283 + L3 LINE CR1 4131 4174 -315 2 1184 2010 178 91 10 chr1 78588510 78588918 -118606514 - BGLII_B LTR ERVK 0 441 1 2 1184 912 250 41 7 chr1 78589072 78589356 -118606076 + MTE2b LTR MaLR 1 343 -27 2 1184 214 130 43 0 chr1 78589356 78589402 -118606030 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 2 1184 1182 81 0 7 chr1 78589406 78589555 -118605877 - B1_Mus1 SINE Alu 0 148 1 2 1184 752 296 19 58 chr1 78589555 78589858 -118605574 + MLT1B LTR MaLR 78 369 -21 2 1184 465 122 0 0 chr1 78589927 78590001 -118605431 + (CAAG)n Simple_repeat Simple_repeat 2 75 0 2 1184 25 31 0 0 chr1 78590029 78590061 -118605371 + AT_rich Low_complexity Low_complexity 1 32 0 2 1184 369 255 42 21 chr1 78590076 78590172 -118605260 + PB1D10 SINE Alu 5 102 -15 2 1184 243 0 0 0 chr1 78590175 78590202 -118605230 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1184 233 369 133 7 chr1 78590804 78590954 -118604478 + Lx8 LINE L1 7154 7322 -151 2 1184 372 133 0 0 chr1 78590971 78591031 -118604401 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1184 252 111 0 0 chr1 78591424 78591469 -118603963 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1184 441 254 17 26 chr1 78592233 78592350 -118603082 - RSINE1 SINE B4 -2 163 48 2 1184 240 182 231 13 chr1 78592607 78592626 -118602806 - PB1 SINE Alu -2 125 31 2 1184 281 196 0 51 chr1 78592626 78592685 -118602747 - ID_B1 SINE B4 -57 167 112 2 1184 256 196 18 0 chr1 78592700 78592756 -118602676 - PB1D10 SINE Alu -7 110 54 2 1184 462 243 41 68 chr1 78592809 78592955 -118602477 + B3A SINE B2 2 143 -55 2 1184 210 353 0 0 chr1 78593474 78593559 -118601873 + GA-rich Low_complexity Low_complexity 2 86 0 2 1184 204 97 0 0 chr1 78593978 78594009 -118601423 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 2 1184 360 316 7 67 chr1 78594097 78594246 -118601186 - Lx8 LINE L1 -159 7314 7175 2 1184 1086 272 52 15 chr1 78594263 78594447 -118600985 - Lx8 LINE L1 -356 7117 6922 2 1184 447 19 0 0 chr1 78594447 78594499 -118600933 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 1184 1086 272 52 15 chr1 78594499 78594639 -118600793 - Lx8 LINE L1 -552 6921 6781 2 1184 425 282 99 0 chr1 78594898 78595029 -118600403 - B1F SINE Alu -1 148 5 2 1184 234 0 0 0 chr1 78595768 78595794 -118599638 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1184 234 0 0 0 chr1 78596219 78596245 -118599187 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1184 727 163 104 0 chr1 78596255 78596390 -118599042 - B1_Mur4 SINE Alu 0 150 2 2 1184 281 283 214 34 chr1 78596421 78596538 -118598894 - B1F SINE Alu -9 140 3 2 1184 690 78 0 0 chr1 78596556 78596658 -118598774 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 1184 845 191 7 7 chr1 78596808 78596956 -118598476 - B1_Mur2 SINE Alu 0 149 2 2 1184 278 278 0 14 chr1 78598383 78598456 -118596976 + Lx8 LINE L1 7090 7161 -312 2 1184 417 20 0 0 chr1 78598511 78598561 -118596871 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1184 288 0 0 0 chr1 78598561 78598592 -118596840 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1184 333 262 44 82 chr1 78598608 78598663 -118596769 - B4 SINE B4 -140 152 96 2 1184 2350 113 138 58 chr1 78598663 78599075 -118596357 + RLTR41 LTR ERV1 2 446 0 2 1184 333 262 44 82 chr1 78599075 78599177 -118596255 - B4 SINE B4 -197 95 1 2 1184 267 103 0 0 chr1 78599240 78599279 -118596153 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1184 1014 51 0 28 chr1 78599279 78599421 -118596011 - B1_Mm SINE Alu 0 147 10 2 1184 477 292 104 50 chr1 78600513 78600715 -118594717 + B3A SINE B2 2 214 -2 2 1184 432 247 0 25 chr1 78601115 78601277 -118594155 + (TATG)n Simple_repeat Simple_repeat 2 159 0 2 1184 502 248 8 17 chr1 78602414 78602533 -118592899 - RSINE1 SINE B4 -46 119 2 2 1184 682 286 32 42 chr1 78602550 78602835 -118592597 - L1MB8 LINE L1 -6 6172 5891 2 1184 295 230 39 77 chr1 78602891 78602979 -118592453 - B1F1 SINE Alu -62 87 2 2 1184 403 340 98 40 chr1 78602979 78603307 -118592125 - L1MC LINE L1 -2079 5803 5457 2 1184 770 231 75 10 chr1 78603308 78603509 -118591923 + BGLII_B LTR ERVK 228 441 0 2 1184 282 106 0 0 chr1 78603695 78603742 -118591690 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1184 1446 54 38 0 chr1 78604094 78604280 -118591152 - B2_Mm2 SINE B2 -1 194 2 2 1184 406 290 55 12 chr1 78604283 78604430 -118591002 - ID_B1 SINE B4 -1 223 76 2 1184 297 128 0 0 chr1 78604549 78604596 -118590836 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1184 947 62 0 0 chr1 78604596 78604724 -118590708 - B1_Mus1 SINE Alu 0 148 21 2 1184 243 222 0 18 chr1 78607789 78607844 -118587588 + L1MC1 LINE L1 6273 6326 -7 2 1184 590 252 101 41 chr1 78607888 78608107 -118587325 + B4 SINE B4 48 279 -13 2 1184 449 218 0 11 chr1 78608196 78608377 -118587055 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1184 591 206 0 0 chr1 78608391 78608566 -118586866 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1184 226 230 20 13 chr1 78608590 78608740 -118586692 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 1184 304 300 0 0 chr1 78608743 78608833 -118586599 - B4A SINE B4 0 292 203 2 1184 281 341 58 40 chr1 78609083 78609309 -118586123 + RMER15 LTR ERVL 343 572 -3 2 1184 991 221 164 42 chr1 78609315 78609383 -118586049 - ORR1D1 LTR MaLR -3 371 314 2 1184 838 147 0 133 chr1 78609383 78609556 -118585876 + B1_Mur4 SINE Alu 1 150 0 2 1184 991 221 164 42 chr1 78609556 78609817 -118585615 - ORR1D1 LTR MaLR -61 313 2 2 1184 2995 149 37 13 chr1 78609910 78610454 -118584978 + RMER13B LTR ERVK 1 557 -351 2 1184 848 179 137 42 chr1 78610738 78611000 -118584432 + RMER13B LTR ERVK 622 908 0 2 1184 210 158 26 0 chr1 78611515 78611553 -118583879 + B1_Mus1 SINE Alu 33 71 -77 2 1184 186 71 0 0 chr1 78611572 78611600 -118583832 + (CCCCAA)n Simple_repeat Simple_repeat 5 32 0 2 1184 677 262 0 130 chr1 78611609 78611855 -118583577 - MTE2b LTR MaLR 0 379 166 2 1184 499 230 9 0 chr1 78611913 78612026 -118583406 - RSINE1 SINE B4 -51 114 1 2 1184 719 260 11 6 chr1 78612026 78612204 -118583228 - MTE2b LTR MaLR -200 179 1 2 1184 693 238 159 0 chr1 78612225 78612414 -118583018 + ID_B1 SINE B4 1 219 -5 2 1184 243 192 260 10 chr1 78612970 78613070 -118582362 + L1MC1 LINE L1 5759 5883 -450 2 1184 301 155 0 65 chr1 78613077 78613139 -118582293 + B1_Mus1 SINE Alu 3 60 -88 2 1184 471 156 0 0 chr1 78613142 78613264 -118582168 + GA-rich Low_complexity Low_complexity 4 125 0 2 1184 530 154 9 37 chr1 78613267 78613375 -118582057 + B1_Mm SINE Alu 42 146 -1 2 1184 574 325 64 18 chr1 78613413 78613804 -118581628 + L1MC1 LINE L1 5925 6333 0 2 1184 1086 199 10 0 chr1 78613838 78614034 -118581398 + B3 SINE B2 5 202 -14 2 1184 231 36 0 0 chr1 78614043 78614071 -118581361 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 2 1184 560 194 131 8 chr1 78614185 78614315 -118581117 - B1F2 SINE Alu -3 146 1 2 1184 197 77 0 49 chr1 78614322 78614363 -118581069 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 2 1184 1043 71 43 0 chr1 78614367 78614507 -118580925 - B1_Mus1 SINE Alu 0 148 3 2 1184 253 183 0 112 chr1 78614894 78614974 -118580458 - MLT1A LTR MaLR -22 386 316 2 1184 506 273 41 20 chr1 78615044 78615190 -118580242 + B1F1 SINE Alu 1 149 0 2 1184 606 205 65 8 chr1 78615318 78615441 -118579991 + B1F SINE Alu 9 138 -11 2 1184 202 229 16 16 chr1 78615447 78615509 -118579923 + CT-rich Low_complexity Low_complexity 2 63 0 2 1184 304 284 27 0 chr1 78616131 78616205 -118579227 + B1F1 SINE Alu 1 76 -73 3 1184 783 285 10 0 chr1 78616229 78616436 -118578996 + ID_B1 SINE B4 11 219 -5 3 1184 22 0 0 0 chr1 78616694 78616716 -118578716 + AT_rich Low_complexity Low_complexity 1 22 0 3 1184 258 304 28 28 chr1 78616760 78616831 -118578601 - MLT1A LTR MaLR -125 249 179 2 1184 683 121 17 0 chr1 78616842 78616958 -118578474 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 3 1184 229 214 0 14 chr1 78616958 78617029 -118578403 + (TTTG)n Simple_repeat Simple_repeat 4 73 0 3 1184 1228 48 0 7 chr1 78617029 78617177 -118578255 - B1_Mus1 SINE Alu 0 148 2 3 1184 661 245 5 71 chr1 78617274 78617485 -118577947 + B3A SINE B2 1 197 -1 3 1184 189 333 0 44 chr1 78617939 78618030 -118577402 + L2a LINE L2 3336 3422 -4 3 1184 907 160 7 0 chr1 78618153 78618297 -118577135 + B1_Mur4 SINE Alu 1 145 -5 3 1184 1039 238 19 5 chr1 78618396 78618603 -118576829 + B3 SINE B2 2 211 -5 3 1184 372 178 246 27 chr1 78618636 78618746 -118576686 + B1F2 SINE Alu 5 138 -11 3 1184 385 320 20 26 chr1 78618767 78618918 -118576514 - B3A SINE B2 -45 153 4 3 1184 448 298 0 60 chr1 78618920 78619070 -118576362 - ID_B1 SINE B4 -2 222 82 3 1184 390 91 0 0 chr1 78619419 78619474 -118575958 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 1184 1165 82 0 0 chr1 78619670 78619817 -118575615 + B1_Mus1 SINE Alu 2 148 0 3 1184 446 23 5 124 chr1 78619836 78620038 -118575394 + A-rich Low_complexity Low_complexity 1 178 0 3 1184 670 76 8 17 chr1 78619999 78620119 -118575313 + (CAAAA)n Simple_repeat Simple_repeat 2 120 0 3 1184 305 250 48 0 chr1 78620119 78620203 -118575229 + B1F SINE Alu 49 136 -13 3 1184 1404 64 0 65 chr1 78620277 78620477 -118574955 + B2_Mm2 SINE B2 2 188 -7 3 1184 388 252 39 39 chr1 78620499 78620602 -118574830 + PB1D7 SINE Alu 1 103 -17 3 1184 1747 176 132 22 chr1 78621296 78621750 -118573682 - RLTR24 LTR ERV1 -25 504 1 3 1184 625 273 32 13 chr1 78622168 78622324 -118573108 - B3A SINE B2 -38 160 2 3 1184 438 306 71 52 chr1 78623048 78623203 -118572229 + RSINE1 SINE B4 8 165 0 3 1184 975 93 0 0 chr1 78623207 78623347 -118572085 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 3 1184 543 256 76 43 chr1 78623367 78623551 -118571881 + B3A SINE B2 2 191 -7 3 1184 254 222 19 0 chr1 78623603 78623657 -118571775 + B1F SINE Alu 2 56 -93 3 1184 21 36 0 0 chr1 78623679 78623707 -118571725 + AT_rich Low_complexity Low_complexity 1 28 0 3 1184 306 301 172 0 chr1 78624048 78624141 -118571291 + PB1D7 SINE Alu 5 113 -7 3 1184 404 291 10 0 chr1 78624897 78625000 -118570432 + PB1D7 SINE Alu 2 105 -15 3 1184 1190 191 132 18 chr1 78625092 78625374 -118570058 + ORR1D1 LTR MaLR 1 297 -77 3 1184 415 326 53 101 chr1 78625381 78625818 -118569614 + RLTR12B LTR ERVK 9 424 -104 3 1184 301 160 147 0 chr1 78625850 78625925 -118569507 + ORR1C2 LTR MaLR 299 384 0 3 1184 1609 43 0 0 chr1 78626426 78626614 -118568818 - B2_Mm1t SINE B2 -5 188 1 3 1184 260 122 0 0 chr1 78626742 78626783 -118568649 - ID_B1 SINE B4 -17 207 167 3 1184 751 256 34 29 chr1 78626804 78626957 -118568475 - ID_B1 SINE B4 -17 207 52 3 1184 708 261 223 38 chr1 78626957 78627309 -118568123 + RLTR16 LTR ERVK 1 400 -105 3 1184 468 0 0 0 chr1 78627309 78627361 -118568071 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1184 708 261 223 38 chr1 78627361 78627434 -118567998 + RLTR16 LTR ERVK 401 504 -1 3 1184 751 256 34 29 chr1 78627434 78627485 -118567947 - ID SINE ID -173 51 2 3 1184 629 181 38 0 chr1 78627515 78627648 -118567784 - B1_Mus2 SINE Alu -2 145 8 3 1184 464 157 361 0 chr1 78628142 78628250 -118567182 - B1_Mus1 SINE Alu -1 147 1 3 1184 218 32 32 0 chr1 78628450 78628481 -118566951 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1184 400 344 147 27 chr1 78629201 78629494 -118565938 - LTR16A LTR ERVL -91 360 33 3 1184 1953 139 40 6 chr1 78629553 78629900 -118565532 + ORR1B2 LTR MaLR 1 359 -8 3 1184 1172 89 65 0 chr1 78630032 78630200 -118565232 + B2_Mm1t SINE B2 1 179 -14 3 1184 331 136 327 64 chr1 78630251 78630361 -118565071 + B2_Mm2 SINE B2 47 185 -10 3 1184 270 120 0 0 chr1 78630391 78630434 -118564998 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1184 1214 48 0 0 chr1 78630434 78630581 -118564851 - B1_Mm SINE Alu 0 147 1 3 1184 270 120 0 0 chr1 78630581 78630587 -118564845 + (T)n Simple_repeat Simple_repeat 1 6 0 3 1184 753 222 0 0 chr1 78630621 78630797 -118564635 + GA-rich Low_complexity Low_complexity 3 178 0 3 1184 404 274 26 0 chr1 78630816 78630929 -118564503 + PB1D7 SINE Alu 5 120 0 3 1184 22 0 0 0 chr1 78631487 78631509 -118563923 + AT_rich Low_complexity Low_complexity 1 22 0 3 1184 311 204 0 0 chr1 78631524 78631578 -118563854 + ID_B1 SINE B4 118 171 -53 3 1184 893 232 45 0 chr1 78631651 78631849 -118563583 + B3 SINE B2 10 216 0 3 1184 3038 169 52 36 chr1 78631868 78632500 -118562932 + RLTR26 LTR ERVK 1 642 0 3 1184 849 226 62 33 chr1 78633364 78633574 -118561858 - B3 SINE B2 0 216 1 3 1184 285 257 101 44 chr1 78633722 78633881 -118561551 + L1MB4 LINE L1 5433 5600 -580 3 1184 180 0 0 0 chr1 78633882 78633902 -118561530 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1184 1781 279 37 49 chr1 78633916 78634667 -118560765 - L1_Rod LINE L1 -1223 4624 3883 3 1184 198 103 0 0 chr1 78634667 78634696 -118560736 + (TTTTC)n Simple_repeat Simple_repeat 4 32 0 3 1184 219 69 0 0 chr1 78634773 78634802 -118560630 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1184 1277 40 0 0 chr1 78634805 78634953 -118560479 - B1_Mus1 SINE Alu 0 148 1 3 1184 36 0 0 0 chr1 78634960 78634996 -118560436 + AT_rich Low_complexity Low_complexity 1 36 0 3 1184 918 106 0 0 chr1 78635038 78635179 -118560253 + (GAA)n Simple_repeat Simple_repeat 1 141 0 3 1184 1342 38 34 28 chr1 78635180 78635538 -118559894 + (GGGAA)n Simple_repeat Simple_repeat 1 360 0 3 1184 180 188 0 0 chr1 78635540 78635604 -118559828 + (AGATG)n Simple_repeat Simple_repeat 3 66 0 3 1184 350 265 82 159 chr1 78635798 78635911 -118559521 + L1MB4 LINE L1 5829 5924 -256 3 1184 2165 149 55 57 chr1 78635911 78636331 -118559101 - MTC LTR MaLR -2 419 1 3 1184 1095 211 19 0 chr1 78636331 78636540 -118558892 + B3 SINE B2 4 216 0 3 1184 350 265 82 159 chr1 78636540 78636645 -118558787 + L1MB4 LINE L1 5925 6030 -150 3 1184 33 25 0 0 chr1 78636656 78636696 -118558736 + AT_rich Low_complexity Low_complexity 1 40 0 3 1184 201 74 0 0 chr1 78636753 78636780 -118558652 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1184 1035 70 0 0 chr1 78636788 78636917 -118558515 - B1_Mm SINE Alu -18 129 1 3 1184 321 106 324 18 chr1 78636922 78637036 -118558396 - B2_Mm2 SINE B2 0 195 47 3 1184 1103 105 12 0 chr1 78637056 78637218 -118558214 - B2_Mm1t SINE B2 -26 167 4 3 1184 477 0 0 0 chr1 78637244 78637297 -118558135 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1184 216 0 0 0 chr1 78637297 78637320 -118558112 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1184 346 257 75 9 chr1 78637380 78637486 -118557946 + RSINE1 SINE B4 9 121 -44 3 1184 642 241 77 44 chr1 78637577 78637759 -118557673 + B3A SINE B2 10 197 -1 3 1184 2034 137 8 14 chr1 78637786 78638142 -118557290 - ORR1B1 LTR MaLR 0 394 41 3 1184 283 286 3 34 chr1 78638182 78638279 -118557153 - RSINE1 SINE B4 -199 93 1 3 1184 316 315 11 88 chr1 78638377 78638558 -118556874 + ID_B1 SINE B4 24 190 -34 3 1184 437 189 94 10 chr1 78638528 78638624 -118556808 - ORR1B1 LTR MaLR -231 163 60 3 1184 240 209 9 71 chr1 78638680 78638793 -118556639 + (CAAA)n Simple_repeat Simple_repeat 2 107 0 3 1184 1127 135 65 5 chr1 78639096 78639297 -118556135 + MTC LTR MaLR 1 213 -208 3 1184 591 222 8 0 chr1 78639303 78639420 -118556012 - B3 SINE B2 -95 121 4 3 1184 2264 161 20 7 chr1 78639420 78639828 -118555604 + MTC LTR MaLR 1 413 -8 3 1184 918 145 6 16 chr1 78639886 78640068 -118555364 + CT-rich Low_complexity Low_complexity 1 180 0 3 1184 594 252 35 7 chr1 78640085 78640229 -118555203 - B1F2 SINE Alu -1 148 1 3 1184 510 266 34 20 chr1 78640234 78640380 -118555052 - B1F SINE Alu -1 148 1 3 1184 1261 265 22 46 chr1 78641381 78641792 -118553640 + MTD LTR MaLR 19 419 0 3 1184 592 256 0 0 chr1 78641840 78641965 -118553467 + ID_B1 SINE B4 91 215 -9 3 1184 225 159 68 0 chr1 78641926 78641970 -118553462 + PB1D10 SINE Alu 67 113 -4 3 1184 557 198 58 0 chr1 78642298 78642419 -118553013 - B3 SINE B2 -87 129 2 3 18 1044 52 0 0 chr1 78643070 78643205 -118552227 + (CA)n Simple_repeat Simple_repeat 2 136 0 3 1185 1238 47 0 0 chr1 78643306 78643454 -118551978 + B1_Mus1 SINE Alu 1 148 0 3 1185 335 41 0 20 chr1 78643466 78643516 -118551916 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1185 226 224 0 20 chr1 78644067 78644117 -118551315 + B1F1 SINE Alu 1 49 -100 3 1185 23 33 0 0 chr1 78644484 78644514 -118550918 + AT_rich Low_complexity Low_complexity 1 30 0 3 1185 333 292 0 111 chr1 78644529 78644637 -118550795 - RSINE1 SINE B4 -67 98 3 3 1185 1257 75 23 23 chr1 78644928 78645105 -118550327 + B2_Mm1t SINE B2 3 179 -14 3 1185 359 126 14 0 chr1 78645158 78645223 -118550209 + B2_Mm2 SINE B2 46 116 -82 3 1185 237 65 0 0 chr1 78645239 78645270 -118550162 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1185 647 278 30 20 chr1 78645502 78645704 -118549728 + ID_B1 SINE B4 4 207 -17 3 1185 216 0 0 0 chr1 78646562 78646586 -118548846 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1185 402 94 0 0 chr1 78646687 78646751 -118548681 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1185 280 155 52 0 chr1 78647199 78647257 -118548175 - MER5A1 DNA MER1_type -69 97 37 4 1185 275 235 86 128 chr1 78648156 78648273 -118547159 - ID_B1 SINE B4 -33 191 80 4 1185 227 374 26 0 chr1 78648295 78648410 -118547022 + MLT1K LTR MaLR 476 593 -2 4 1185 208 143 0 0 chr1 78648539 78648574 -118546858 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1185 301 232 101 40 chr1 78648577 78648676 -118546756 - PB1D9 SINE Alu 0 120 16 4 1185 230 282 15 120 chr1 78648601 78648734 -118546698 - MT2B LTR ERVL -358 243 125 4 1185 225 247 155 58 chr1 78648938 78649041 -118546391 - PB1D7 SINE Alu -5 115 3 4 1185 521 253 164 16 chr1 78649072 78649261 -118546171 - ID_B1 SINE B4 -5 219 3 4 1185 220 247 22 11 chr1 78649293 78649383 -118546049 + C-rich Low_complexity Low_complexity 3 93 0 4 1185 371 237 9 0 chr1 78649364 78649478 -118545954 + CT-rich Low_complexity Low_complexity 2 116 0 4 1185 714 162 14 34 chr1 78649479 78649626 -118545806 - B1_Mur3 SINE Alu 0 149 6 4 1185 349 279 51 32 chr1 78649604 78649768 -118545664 + MTE2b LTR MaLR 121 288 -91 4 1185 636 265 0 0 chr1 78650428 78650564 -118544868 - ID_B1 SINE B4 -3 221 86 4 1185 1356 81 43 0 chr1 78650677 78650862 -118544570 + B2_Mm1t SINE B2 1 193 0 4 1185 386 282 175 37 chr1 78650986 78651203 -118544229 - MTD LTR MaLR -116 303 57 4 1185 647 188 80 0 chr1 78651398 78651536 -118543896 - B1_Mur2 SINE Alu 0 149 1 4 1185 657 36 0 0 chr1 78652010 78652094 -118543338 + (TTTCC)n Simple_repeat Simple_repeat 4 87 0 4 1185 462 274 0 24 chr1 78652101 78652228 -118543204 - B1F SINE Alu -1 148 25 4 1185 264 294 31 129 chr1 78652108 78652359 -118543073 - RSINE1 SINE B4 -73 219 5 4 1185 414 0 0 0 chr1 78652359 78652405 -118543027 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1185 501 270 18 0 chr1 78652427 78652538 -118542894 - B1_Mur1 SINE Alu -36 113 1 4 1185 372 228 38 0 chr1 78652681 78652760 -118542672 + B1F SINE Alu 56 137 -12 4 1185 1229 41 0 0 chr1 78653638 78653785 -118541647 - B1_Mm SINE Alu 0 147 1 4 1185 33 0 0 0 chr1 78656438 78656471 -118538961 + AT_rich Low_complexity Low_complexity 1 33 0 4 1185 523 174 231 0 chr1 78656758 78656879 -118538553 + B1_Mur2 SINE Alu 1 149 0 4 1185 259 269 95 9 chr1 78657571 78657676 -118537756 - MTEb LTR MaLR -2 377 264 4 1185 249 231 50 107 chr1 78657687 78657808 -118537624 - MTEb LTR MaLR -147 212 99 4 1185 252 244 0 159 chr1 78657875 78657982 -118537450 - MTEb LTR MaLR -287 92 3 4 1185 618 215 0 27 chr1 78658247 78658395 -118537037 - B1_Mus1 SINE Alu 0 148 5 4 1185 765 194 0 40 chr1 78658928 78659078 -118536354 - B1_Mur4 SINE Alu -6 144 1 4 1185 180 158 0 0 chr1 78659270 78659308 -118536124 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1185 524 277 42 14 chr1 78659338 78659481 -118535951 - RSINE1 SINE B4 -14 151 5 4 1185 386 223 117 0 chr1 78659696 78659799 -118535633 - B1_Mur2 SINE Alu 0 149 35 4 1185 201 121 0 0 chr1 78659936 78659969 -118535463 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1185 335 250 59 12 chr1 78660028 78660113 -118535319 - PB1D10 SINE Alu -28 89 1 4 1185 195 42 0 0 chr1 78660746 78660770 -118534662 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 4 1185 1604 199 168 38 chr1 78663849 78664320 -118531112 + RMER20B LTR ERVK 25 556 -71 4 1185 293 225 24 48 chr1 78664382 78664466 -118530966 + RMER20B LTR ERVK 521 602 -25 4 1185 291 0 0 0 chr1 78664532 78664567 -118530865 - U2 snRNA snRNA -153 35 1 4 1185 327 220 37 65 chr1 78664983 78665090 -118530342 + B1F2 SINE Alu 6 109 -40 4 1185 268 184 0 0 chr1 78665612 78665661 -118529771 - ID4 SINE ID -30 53 5 4 1185 1092 77 28 0 chr1 78665697 78665840 -118529592 - B1_Mm SINE Alu 0 147 1 4 1185 254 232 57 14 chr1 78665842 78665912 -118529520 - B1F SINE Alu -1 148 76 4 1185 353 310 34 9 chr1 78666091 78666235 -118529197 - B1F SINE Alu 0 150 2 4 1185 234 91 0 0 chr1 78666305 78666338 -118529094 + (CCCA)n Simple_repeat Simple_repeat 2 34 0 4 1185 24 32 0 0 chr1 78666973 78667004 -118528428 + AT_rich Low_complexity Low_complexity 1 31 0 4 1185 357 295 19 0 chr1 78667142 78667247 -118528185 - B1F1 SINE Alu -2 147 41 4 1185 823 71 0 31 chr1 78667262 78667392 -118528040 + (TCCC)n Simple_repeat Simple_repeat 4 129 0 4 1185 296 232 69 69 chr1 78667395 78667497 -118527935 - PB1D9 SINE Alu -6 114 13 4 1185 180 0 0 0 chr1 78668184 78668204 -118527228 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1185 401 235 0 56 chr1 78668204 78668294 -118527138 - B1_Mur2 SINE Alu -13 136 52 4 1185 336 94 0 0 chr1 78669140 78669193 -118526239 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1185 243 88 0 0 chr1 78669193 78669227 -118526205 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1185 194 286 176 31 chr1 78669315 78669474 -118525958 - MIRb SINE MIR -74 194 13 4 1185 495 181 16 57 chr1 78669888 78670011 -118525421 + PB1D7 SINE Alu 2 119 -1 4 1185 198 0 0 0 chr1 78670757 78670779 -118524653 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1185 303 49 0 0 chr1 78670943 78670984 -118524448 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1185 1230 54 0 0 chr1 78671461 78671609 -118523823 + B1_Mus1 SINE Alu 1 148 0 4 1185 30 0 0 0 chr1 78671673 78671703 -118523729 + AT_rich Low_complexity Low_complexity 1 30 0 4 1185 1033 73 22 0 chr1 78672715 78672852 -118522580 + B1_Mus1 SINE Alu 2 141 -7 4 1185 298 177 16 66 chr1 78673094 78673215 -118522217 + CT-rich Low_complexity Low_complexity 1 115 0 4 1185 483 188 95 66 chr1 78673221 78673358 -118522074 - B1_Mur4 SINE Alu -5 145 5 4 1185 242 125 0 20 chr1 78673558 78673607 -118521825 + (TATG)n Simple_repeat Simple_repeat 2 49 0 4 1185 318 193 0 19 chr1 78674361 78674441 -118520991 + B1F SINE Alu 1 75 -45 4 1185 216 0 0 0 chr1 78674766 78674790 -118520642 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1185 1159 35 21 0 chr1 78674801 78674945 -118520487 - B1_Mus1 SINE Alu 0 148 2 4 1185 22 0 0 0 chr1 78674955 78674977 -118520455 + AT_rich Low_complexity Low_complexity 1 22 0 4 1185 1274 215 101 53 chr1 78675012 78675370 -118520062 - ORR1C2 LTR MaLR -4 380 6 4 1185 270 0 0 0 chr1 78675810 78675840 -118519592 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1185 624 14 0 0 chr1 78675840 78675913 -118519519 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1185 3722 269 121 20 chr1 78675922 78677654 -118517778 - Lx9 LINE L1 -185 7459 5501 4 1185 326 278 30 20 chr1 78679004 78679103 -118516329 + MIR SINE MIR 6 105 -157 4 1185 291 363 14 37 chr1 78679161 78679323 -118516109 - MIRb SINE MIR -25 183 27 4 1185 408 255 0 10 chr1 78679381 78679480 -118515952 - B1_Mm SINE Alu -2 145 48 4 1185 1125 42 28 14 chr1 78679515 78679660 -118515772 - B1_Mus1 SINE Alu 0 148 2 4 1185 1330 91 37 11 chr1 78679708 78679897 -118515535 + B2_Mm2 SINE B2 1 194 -1 4 1185 751 42 0 168 chr1 78680507 78680650 -118514782 + B1_Mus2 SINE Alu 29 147 0 4 1185 414 0 0 0 chr1 78680761 78680807 -118514625 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1185 210 184 0 73 chr1 78681414 78681455 -118513977 + ID4_ SINE ID 2 39 -44 4 1185 766 74 97 16 chr1 78682502 78682616 -118512816 + B1_Mus2 SINE Alu 14 139 -8 4 1185 189 0 0 0 chr1 78682616 78682637 -118512795 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 4 1185 639 196 32 71 chr1 78682932 78683086 -118512346 - B1_Mur2 SINE Alu 0 149 2 4 1185 633 115 0 0 chr1 78683090 78683186 -118512246 + (TCCC)n Simple_repeat Simple_repeat 4 99 0 4 1185 496 195 87 31 chr1 78683189 78683316 -118512116 - B1F SINE Alu 0 149 16 4 1185 933 187 90 10 chr1 78683748 78683948 -118511484 - B3 SINE B2 0 216 1 4 1185 614 199 76 0 chr1 78685031 78685162 -118510270 - B1_Mur2 SINE Alu 0 149 9 4 1185 243 203 0 0 chr1 78685269 78685328 -118510104 + CT-rich Low_complexity Low_complexity 3 61 0 4 1185 818 194 55 100 chr1 78685610 78685810 -118509622 - B3 SINE B2 -1 194 4 4 1185 248 157 199 4 chr1 78685829 78685920 -118509512 - B1_Mur1 SINE Alu -10 139 6 4 1185 1435 118 23 5 chr1 78686304 78686525 -118508907 + URR1B DNA MER1_type 1 225 0 4 1185 971 140 0 11 chr1 78687075 78687256 -118508176 + (TATG)n Simple_repeat Simple_repeat 2 180 0 4 1185 389 289 111 14 chr1 78687420 78687564 -118507868 - RSINE1 SINE B4 -6 159 2 4 1185 314 183 0 0 chr1 78687573 78687633 -118507799 - B3 SINE B2 -2 214 155 4 1185 550 277 119 37 chr1 78687627 78687871 -118507561 + B4 SINE B4 21 284 -8 4 1185 273 89 0 0 chr1 78687872 78687917 -118507515 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 4 1185 424 321 0 0 chr1 78687935 78688044 -118507388 + ID_B1 SINE B4 99 207 -17 4 1185 215 227 0 15 chr1 78688071 78688138 -118507294 + GA-rich Low_complexity Low_complexity 1 66 0 4 1185 853 206 21 94 chr1 78688944 78689179 -118506253 + ID_B1 SINE B4 2 219 -5 4 1185 363 96 0 0 chr1 78689653 78689705 -118505727 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 4 1185 224 319 56 0 chr1 78690235 78690307 -118505125 + L2 LINE L2 2978 3053 -366 4 1185 223 175 0 0 chr1 78690333 78690373 -118505059 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 4 1185 244 294 54 0 chr1 78690413 78690505 -118504927 - PB1D10 SINE Alu -16 101 5 5 1185 255 103 0 0 chr1 78691078 78691117 -118504315 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1185 3817 166 45 42 chr1 78691360 78692289 -118503143 - RMER19A LTR ERVK 0 902 38 5 1185 653 175 7 27 chr1 78692262 78692409 -118503023 - RMER19A LTR ERVK -556 181 38 5 1185 867 170 10 31 chr1 78692382 78692627 -118502805 - RMER19A LTR ERVK -556 181 1 5 1185 358 299 26 39 chr1 78693208 78693361 -118502071 + RSINE1 SINE B4 5 155 -10 5 1185 297 217 17 0 chr1 78693874 78693934 -118501498 - B1_Mus2 SINE Alu -69 78 18 5 1185 225 227 91 0 chr1 78694063 78694129 -118501303 - ID4_ SINE ID -9 74 3 5 1185 307 265 225 14 chr1 78694651 78694869 -118500563 - RMER20B LTR ERVK -130 497 234 5 1185 960 232 189 12 chr1 78695208 78695531 -118499901 - ORR1C2 LTR MaLR -4 380 1 5 1185 390 42 0 0 chr1 78696575 78696623 -118498809 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1185 591 287 106 12 chr1 78696626 78696880 -118498552 - B4 SINE B4 -14 278 1 5 1185 261 0 0 0 chr1 78697082 78697111 -118498321 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1185 30 69 0 0 chr1 78697259 78697317 -118498115 + AT_rich Low_complexity Low_complexity 1 58 0 5 1185 1051 202 5 24 chr1 78698061 78698269 -118497163 - B3 SINE B2 -12 204 1 5 1185 1067 235 183 32 chr1 78698718 78699123 -118496309 - RMER15 LTR ERVL -18 557 92 5 1185 537 194 105 30 chr1 78700868 78701001 -118494431 - B1_Mus2 SINE Alu 0 147 5 5 1185 333 239 107 47 chr1 78701001 78701017 -118494415 - ID_B1 SINE B4 0 224 67 5 1185 232 143 0 0 chr1 78701195 78701230 -118494202 - B1F SINE Alu -66 83 49 5 1185 282 130 130 0 chr1 78701354 78701408 -118494024 - B1_Mur4 SINE Alu -65 85 25 5 1185 515 174 139 42 chr1 78702217 78702361 -118493071 - MTE2b LTR MaLR 0 379 222 5 1185 21 0 0 0 chr1 78703973 78703994 -118491438 + AT_rich Low_complexity Low_complexity 1 21 0 5 1185 1102 120 16 11 chr1 78704391 78704576 -118490856 - B2_Mm2 SINE B2 0 195 10 5 1185 197 65 32 0 chr1 78704606 78704637 -118490795 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 5 1185 373 77 0 0 chr1 78704646 78704698 -118490734 - B3 SINE B2 -163 53 2 5 1185 1878 109 29 13 chr1 78704856 78705172 -118490260 + ORR1A4 LTR MaLR 1 321 -8 5 1185 820 236 79 20 chr1 78706318 78706521 -118488911 - B3 SINE B2 -1 215 1 5 1185 1162 123 43 0 chr1 78706914 78707101 -118488331 - B2_Mm2 SINE B2 0 195 1 5 1185 1578 111 95 0 chr1 78707101 78707363 -118488069 - ORR1A4 LTR MaLR -42 287 1 5 1185 608 153 0 8 chr1 78708987 78709106 -118486326 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 1185 26 0 0 0 chr1 78709460 78709486 -118485946 + AT_rich Low_complexity Low_complexity 1 26 0 5 1185 666 229 166 9 chr1 78709570 78709799 -118485633 - L1MB8 LINE L1 -37 6141 5877 5 1185 214 267 187 0 chr1 78709820 78709895 -118485537 - RSINE1 SINE B4 -2 163 75 5 1185 483 18 0 0 chr1 78710389 78710445 -118484987 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1185 713 264 75 22 chr1 78710852 78711134 -118484298 - L1_Rod LINE L1 -536 5755 5401 5 1185 534 309 34 5 chr1 78711195 78711400 -118484032 - L1MB8 LINE L1 -313 5865 5655 5 1185 549 242 44 29 chr1 78711640 78711776 -118483656 - B1_Mur2 SINE Alu -1 148 11 5 1185 263 323 46 119 chr1 78711646 78711797 -118483635 - B4 SINE B4 -73 219 80 5 1185 336 340 57 19 chr1 78712987 78713197 -118482235 - LTR16A LTR ERVL 0 451 234 5 1185 209 159 23 0 chr1 78713391 78713435 -118481997 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 5 1185 774 244 45 35 chr1 78714035 78714235 -118481197 - B3 SINE B2 -12 204 3 5 1185 1369 85 26 0 chr1 78715013 78715202 -118480230 - B2_Mm2 SINE B2 -1 194 1 5 1185 1236 72 3 9 chr1 78715346 78715667 -118479765 + (TG)n Simple_repeat Simple_repeat 1 318 0 5 1185 275 231 0 30 chr1 78715953 78716020 -118479412 + CT-rich Low_complexity Low_complexity 3 67 0 5 1185 776 185 52 0 chr1 78716258 78716393 -118479039 + B1_Mur3 SINE Alu 5 146 -3 5 1185 748 124 7 7 chr1 78716393 78716531 -118478901 + (TA)n Simple_repeat Simple_repeat 1 138 0 5 1185 839 276 5 0 chr1 78716537 78716740 -118478692 - ID_B1 SINE B4 -20 204 1 5 1185 784 240 209 32 chr1 78717876 78718216 -118477216 - MTD LTR MaLR -19 400 1 5 1185 1032 267 104 17 chr1 78718359 78718706 -118476726 - MTE2a LTR MaLR -2 377 1 5 1185 1244 89 0 6 chr1 78718759 78718940 -118476492 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1185 217 158 26 0 chr1 78718941 78718979 -118476453 + CT-rich Low_complexity Low_complexity 1 39 0 5 1185 778 166 15 22 chr1 78718980 78719116 -118476316 - B1_Mur4 SINE Alu -13 137 3 5 1185 374 331 29 7 chr1 78719191 78719331 -118476101 - L1M3 LINE L1 -493 5690 5548 5 1185 7004 44 8 3 chr1 78719486 78720334 -118475098 - L1Md_F2 LINE L1 0 6582 5731 5 1185 325 298 215 12 chr1 78721591 78721921 -118473511 - L2a LINE L2 -96 3330 2934 5 1185 254 200 28 73 chr1 78722314 78722492 -118472940 + (CAGC)n Simple_repeat Simple_repeat 2 171 0 5 1185 25 0 0 0 chr1 78722826 78722851 -118472581 + AT_rich Low_complexity Low_complexity 1 25 0 5 1185 203 184 0 0 chr1 78722888 78722926 -118472506 + A-rich Low_complexity Low_complexity 1 38 0 5 1185 501 47 0 0 chr1 78723114 78723178 -118472254 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1185 328 327 53 0 chr1 78723886 78723999 -118471433 - PB1D7 SINE Alu -1 119 1 5 1185 234 91 0 0 chr1 78724012 78724045 -118471387 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1185 840 279 59 19 chr1 78724045 78724228 -118471204 - B4 SINE B4 -22 270 76 5 1185 333 0 0 0 chr1 78724228 78724265 -118471167 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1185 840 279 59 19 chr1 78724265 78724337 -118471095 - B4 SINE B4 -217 75 5 5 1185 1225 269 73 8 chr1 78724713 78725069 -118470363 - MTE2b LTR MaLR 0 379 1 5 1185 844 205 91 14 chr1 78725568 78725776 -118469656 - URR1A DNA MER1_type -2 224 1 5 1185 441 310 145 20 chr1 78725776 78726064 -118469368 - MT2A LTR ERVL -15 518 194 5 1185 288 361 0 32 chr1 78726065 78726191 -118469241 - MTEa LTR MaLR -232 147 26 5 1185 481 298 114 16 chr1 78726323 78726507 -118468925 - B4A SINE B4 -90 202 1 5 1185 534 304 94 34 chr1 78727591 78727826 -118467606 + MTE2a LTR MaLR 86 334 -45 5 1185 203 0 37 0 chr1 78727970 78727997 -118467435 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1185 354 296 89 7 chr1 78728368 78728514 -118466918 - L1ME3 LINE L1 -189 5973 5816 5 1185 586 241 42 7 chr1 78728555 78728697 -118466735 - B3 SINE B2 -12 204 58 5 1185 857 262 102 45 chr1 78729575 78729927 -118465505 - L1MA9 LINE L1 -291 6021 5650 5 1185 970 311 41 11 chr1 78731717 78732159 -118463273 - L1MA6 LINE L1 -3 6297 5843 5 1185 598 268 166 16 chr1 78732227 78732385 -118463047 + ID_B1 SINE B4 3 179 -45 5 1185 8103 64 8 14 chr1 78732385 78733414 -118462018 - RLTR13D5 LTR ERVK 0 1023 1 5 1185 598 268 166 16 chr1 78733414 78733448 -118461984 + ID_B1 SINE B4 180 223 -1 5 1185 234 0 0 0 chr1 78734001 78734027 -118461405 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 1185 323 132 0 14 chr1 78734139 78734208 -118461224 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 5 1185 559 319 12 0 chr1 78734223 78734383 -118461049 - RSINE1 SINE B4 -2 163 2 5 1185 307 250 0 0 chr1 78734386 78734458 -118460974 - MER5A1 DNA MER1_type -94 72 1 5 1185 267 103 0 0 chr1 78734658 78734697 -118460735 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 5 1185 459 0 0 0 chr1 78734974 78735025 -118460407 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 5 1185 206 211 0 0 chr1 78735221 78735259 -118460173 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 5 1185 659 328 116 4 chr1 78735269 78735520 -118459912 - B4A SINE B4 -12 280 2 5 1185 247 234 91 80 chr1 78736128 78736216 -118459216 + MTE2a LTR MaLR 282 370 -9 5 1185 30 45 0 0 chr1 78736343 78736387 -118459045 + AT_rich Low_complexity Low_complexity 1 44 0 5 1185 801 263 123 57 chr1 78736589 78736697 -118458735 - Lx8 LINE L1 -11 7462 7348 5 1185 1121 99 114 17 chr1 78736697 78736872 -118458560 - B2_Mm2 SINE B2 -2 193 2 5 1185 801 263 123 57 chr1 78736872 78737146 -118458286 - Lx8 LINE L1 -126 7347 7055 5 1185 401 256 8 40 chr1 78737146 78737272 -118458160 - MLT1A0 LTR MaLR -191 174 53 5 1185 223 26 77 0 chr1 78737794 78737833 -118457599 + (TTTAA)n Simple_repeat Simple_repeat 3 44 0 5 1185 1201 42 0 0 chr1 78737842 78737984 -118457448 - B1_Mus2 SINE Alu -5 142 1 5 1185 751 128 0 0 chr1 78737998 78738115 -118457317 - B1_Mur3 SINE Alu 0 149 33 5 1185 664 266 38 10 chr1 78738143 78738352 -118457080 - B3 SINE B2 0 216 2 5 1185 675 227 84 20 chr1 78738366 78738568 -118456864 - ID_B1 SINE B4 -8 216 2 5 1185 246 250 14 29 chr1 78738628 78738698 -118456734 - B1F SINE Alu 0 149 81 5 1185 402 290 4 0 chr1 78740498 78740750 -118454682 + (CA)n Simple_repeat Simple_repeat 1 253 0 5 1185 3801 123 151 6 chr1 78740979 78741555 -118453877 - RMER1A Other Other -10 1020 376 5 1185 621 0 0 0 chr1 78741555 78741624 -118453808 + (CTATA)n Simple_repeat Simple_repeat 5 73 0 5 1185 3801 164 99 11 chr1 78741624 78741773 -118453659 - RMER1A Other Other -655 375 273 5 1185 1070 213 25 0 chr1 78742758 78742960 -118452472 - B3 SINE B2 -5 211 5 5 1185 326 292 159 117 chr1 78743692 78743912 -118451520 - L1ME2 LINE L1 -41 6123 5917 5 1185 2110 149 60 6 chr1 78743912 78744276 -118451156 + ORR1C2 LTR MaLR 1 384 0 5 1185 326 292 159 117 chr1 78744276 78744808 -118450624 - L1ME2 LINE L1 -248 5916 5339 5 1185 213 94 0 0 chr1 78744814 78744846 -118450586 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1185 524 307 9 111 chr1 78744875 78744992 -118450440 - B4 SINE B4 -98 194 92 5 1185 620 234 22 0 chr1 78744992 78745129 -118450303 - B1_Mur2 SINE Alu -7 142 3 6 1185 524 307 9 111 chr1 78745129 78745227 -118450205 - B4 SINE B4 -201 91 1 5 1185 237 270 0 16 chr1 78745227 78745291 -118450141 - L1ME2 LINE L1 -978 5366 5304 5 1185 751 152 0 0 chr1 78745371 78745489 -118449943 - B3 SINE B2 -88 128 11 6 1185 527 0 0 16 chr1 78746092 78746156 -118449276 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 6 1185 1001 239 132 13 chr1 78746156 78746458 -118448974 - ORR1E LTR MaLR -18 341 2 6 1185 3243 34 0 0 chr1 78746614 78746996 -118448436 + L1Md_T LINE L1 6201 6582 0 6 1185 1270 88 155 283 chr1 78747003 78747081 -118448351 - L1_Mur2 LINE L1 -2040 5745 5633 6 1185 2361 118 62 15 chr1 78747081 78747484 -118447948 - BGLII_Mus LTR ERVK 0 422 1 6 1185 1270 86 161 302 chr1 78747484 78747615 -118447817 - L1_Mur2 LINE L1 -245 5632 5421 6 1185 1095 139 0 0 chr1 78747615 78747795 -118447637 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1185 345 47 0 0 chr1 78747795 78747838 -118447594 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1185 905 102 29 0 chr1 78747838 78747975 -118447457 - B1_Mus1 SINE Alu -2 146 6 6 1185 347 223 24 97 chr1 78747871 78747995 -118447437 - MT2B LTR ERVL -337 264 150 6 1185 1270 86 161 302 chr1 78747975 78748184 -118447248 - L1_Mur2 LINE L1 -457 5420 5226 6 1185 695 141 33 13 chr1 78748184 78748335 -118447097 + Lx4A LINE L1 6903 7056 -2 6 1185 314 220 128 47 chr1 78748480 78748628 -118446804 - L1MEf LINE L1 -4764 1436 1277 6 1185 488 260 47 174 chr1 78748979 78749254 -118446178 + RMER15 LTR ERVL 336 575 0 6 1185 25850 139 30 17 chr1 78749398 78753970 -118441462 - L1_Mus4 LINE L1 -579 6057 1425 6 1185 1314 69 0 0 chr1 78753970 78754144 -118441288 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 6 1185 25850 146 30 19 chr1 78754144 78754172 -118441260 - L1_Mm LINE L1 -4459 1424 1424 6 1185 973 92 42 21 chr1 78754172 78754316 -118441116 - B1_Mus1 SINE Alu 0 148 2 6 1185 25850 175 40 19 chr1 78754316 78755162 -118440270 - L1_Mus4 LINE L1 -4459 1424 562 6 1185 495 0 0 0 chr1 78755376 78755431 -118440001 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6 1185 4219 98 41 0 chr1 78755432 78756044 -118439388 - MusHAL1 LINE L1 -1166 1546 910 6 1185 1853 249 9 19 chr1 78756486 78756919 -118438513 + Lx6 LINE L1 7006 7434 -26 6 1185 28 0 0 0 chr1 78758448 78758476 -118436956 + AT_rich Low_complexity Low_complexity 1 28 0 6 1185 3550 28 0 0 chr1 78758481 78758877 -118436555 - MTA_Mm LTR MaLR 0 396 1 6 1185 8196 28 13 30 chr1 78758877 78759600 -118435832 - MTA_Mm-int LTR MaLR 0 1098 394 6 1185 3246 53 0 2 chr1 78759600 78759998 -118435434 - L1Md_F2 LINE L1 -12 6570 6174 6 1185 8196 28 13 30 chr1 78759998 78760390 -118435042 - MTA_Mm-int LTR MaLR -705 393 1 6 1185 3517 23 2 0 chr1 78760390 78760785 -118434647 - MTA_Mm LTR MaLR 0 396 1 6 1185 980 204 26 5 chr1 78760789 78760981 -118434451 - B3 SINE B2 -18 198 3 6 1185 543 31 0 0 chr1 78762034 78762099 -118433333 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 6 1185 4083 51 2 0 chr1 78763213 78763707 -118431725 - L1Md_F2 LINE L1 -12 6570 6076 6 1185 293 245 107 13 chr1 78764376 78764514 -118430918 - MER33 DNA MER1_type -2 322 171 6 1185 249 248 60 159 chr1 78764514 78764696 -118430736 - MLT2B4 LTR ERVL 0 556 393 6 1185 613 288 117 9 chr1 78764802 78765033 -118430399 + MLT1A0 LTR MaLR 38 293 -72 6 1185 346 269 36 51 chr1 78765228 78765365 -118430067 - MLT2B4 LTR ERVL -416 140 6 6 1185 904 203 27 21 chr1 78765367 78765553 -118429879 + ORR1D1 LTR MaLR 1 187 -187 6 1185 222 222 0 0 chr1 78765637 78765691 -118429741 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1185 373 312 0 10 chr1 78765703 78765800 -118429632 - PB1D10 SINE Alu -15 102 7 6 1185 192 77 0 0 chr1 78766653 78766679 -118428753 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1185 259 294 223 16 chr1 78766683 78766804 -118428628 - RSINE1 SINE B4 -17 148 3 6 1185 8628 26 0 0 chr1 78768040 78769250 -118426182 - L1Md_T LINE L1 0 6582 5397 6 1185 1995 143 10 10 chr1 78769510 78769821 -118425611 - RLTR10E LTR ERVK 0 311 1 6 1185 892 245 37 77 chr1 78769831 78770184 -118425248 + MLT1B LTR MaLR 52 390 0 6 1185 241 265 15 0 chr1 78770235 78770303 -118425129 + MER20B DNA MER1_type 461 529 -254 6 1185 1659 166 26 75 chr1 78770584 78770930 -118424502 - ORR1A4 LTR MaLR 0 329 1 6 1185 257 280 62 39 chr1 78770958 78771088 -118424344 - MER5B DNA MER1_type -34 144 12 6 1185 258 310 80 102 chr1 78771103 78771290 -118424142 + MLT1G LTR MaLR 11 193 -376 6 1185 2945 20 3 14 chr1 78771811 78772158 -118423274 - ORR1A0 LTR MaLR -3 343 1 6 148 34447 66 10 5 chr1 78772341 78778445 -118416987 - L1Md_F2 LINE L1 -11 6571 434 6 1186 23 0 0 0 chr1 78778916 78778939 -118416493 + AT_rich Low_complexity Low_complexity 1 23 0 6 1186 222 37 0 0 chr1 78779043 78779070 -118416362 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1186 200 59 29 0 chr1 78781450 78781484 -118413948 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 6 1186 234 0 0 0 chr1 78781666 78781692 -118413740 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1186 1876 64 135 18 chr1 78781744 78782068 -118413364 + RLTR10B LTR ERVK 1 365 0 6 1186 1441 62 0 0 chr1 78782068 78782246 -118413186 + MMERVK10C-int LTR ERVK 1 178 -7403 6 1186 732 56 213 0 chr1 78782245 78782353 -118413079 + MMERVK10C-int LTR ERVK 5436 5566 -2015 6 1186 1938 60 0 0 chr1 78782353 78782588 -118412844 + MMERVK10C-int LTR ERVK 7347 7581 0 6 1186 2247 15 114 0 chr1 78782588 78782850 -118412582 + RLTR10B LTR ERVK 1 292 0 6 1186 1315 83 50 6 chr1 78782992 78783174 -118412258 - B2_Mm2 SINE B2 -4 191 2 6 1186 253 361 49 0 chr1 78783176 78783298 -118412134 + MTD LTR MaLR 4 131 -288 6 1186 1517 223 41 69 chr1 78783299 78783349 -118412083 + MTD LTR MaLR 13 61 -358 6 1186 2542 88 31 11 chr1 78783349 78783707 -118411725 - Lx2 LINE L1 0 6997 6633 6 1186 1517 223 41 69 chr1 78783707 78783927 -118411505 + MTD LTR MaLR 62 275 -144 6 1186 393 22 0 0 chr1 78783927 78783973 -118411459 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 6 1186 1517 223 41 69 chr1 78783973 78784120 -118411312 + MTD LTR MaLR 276 419 0 6 1186 715 252 175 8 chr1 78784120 78784371 -118411061 + MTD LTR MaLR 127 419 0 6 1186 1519 6 0 11 chr1 78784406 78784588 -118410844 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1186 366 100 0 0 chr1 78784592 78784652 -118410780 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1186 222 37 0 0 chr1 78784871 78784898 -118410534 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 6 1186 863 316 178 54 chr1 78785009 78785818 -118409614 + MTE-int LTR MaLR 46 954 -626 6 1186 747 197 45 25 chr1 78785844 78785909 -118409523 + Lx9 LINE L1 7442 7512 -132 6 1186 405 0 0 0 chr1 78785909 78785954 -118409478 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1186 747 197 45 25 chr1 78785954 78786086 -118409346 + Lx9 LINE L1 7513 7643 -1 6 1186 21 0 0 0 chr1 78786087 78786108 -118409324 + AT_rich Low_complexity Low_complexity 1 21 0 6 1186 441 0 0 0 chr1 78786210 78786259 -118409173 + (TAA)n Simple_repeat Simple_repeat 2 50 0 6 1186 2100 297 63 23 chr1 78787746 78788494 -118406938 - Lx8 LINE L1 -18 7455 6678 6 1186 389 262 0 0 chr1 78789147 78789231 -118406201 + RSINE1 SINE B4 4 87 -78 6 1186 306 254 0 14 chr1 78789297 78789369 -118406063 + ID2 SINE ID 2 72 -11 6 1186 186 43 0 0 chr1 78792577 78792600 -118402832 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1186 377 295 0 0 chr1 78793597 78793692 -118401740 + B3A SINE B2 58 152 -46 6 1186 188 256 0 0 chr1 78794225 78794268 -118401164 - MIR SINE MIR 0 262 220 6 1186 289 363 0 0 chr1 78794274 78794365 -118401067 + L1M4 LINE L1 289 379 -6163 6 1186 1001 259 50 129 chr1 78794368 78794772 -118400660 - MTE2a LTR MaLR 0 379 8 6 1186 481 321 36 0 chr1 78794781 78794949 -118400483 + L1M4 LINE L1 384 557 -5985 6 1186 315 320 124 8 chr1 78794978 78795107 -118400325 + L1M4 LINE L1 541 684 -5858 6 1186 561 251 36 6 chr1 78795277 78795445 -118399987 + MLT1A1 LTR MaLR 234 406 -2 6 1186 799 205 62 42 chr1 78795585 78795778 -118399654 - B3A SINE B2 0 198 2 6 1186 664 263 30 44 chr1 78795796 78795999 -118399433 - B3A SINE B2 -6 210 11 6 1186 549 303 37 5 chr1 78796010 78796199 -118399233 + L1MB7 LINE L1 5916 6110 -74 6 1186 1196 203 17 20 chr1 78796621 78796917 -118398515 + L1VL1 LINE L1 1 295 -6127 6 1186 33584 77 2 4 chr1 78796905 78802813 -118392619 + L1Md_F2 LINE L1 98 5586 -297 6 1186 8313 41 0 5 chr1 78802814 78803814 -118391618 + L1Md_F2 LINE L1 5588 6582 0 6 1186 192 111 0 0 chr1 78803816 78803852 -118391580 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1186 198 176 0 0 chr1 78803978 78804029 -118391403 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 6 1186 642 113 0 0 chr1 78804039 78804136 -118391296 + (TC)n Simple_repeat Simple_repeat 2 98 0 6 1186 531 0 0 0 chr1 78804431 78804490 -118390942 + (TTA)n Simple_repeat Simple_repeat 2 60 0 6 1186 546 119 0 0 chr1 78804894 78804978 -118390454 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 1186 1146 90 0 0 chr1 78804978 78805123 -118390309 - B1_Mus2 SINE Alu -1 146 2 6 1186 1143 65 18 6 chr1 78805178 78805348 -118390084 + (TTTCC)n Simple_repeat Simple_repeat 5 176 0 6 1186 312 27 0 0 chr1 78805355 78805392 -118390040 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 6 1186 3184 141 116 14 chr1 78805392 78805496 -118389936 - Lx LINE L1 -15 6639 6536 6 1186 276 30 0 0 chr1 78805496 78805529 -118389903 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 6 1186 3184 141 116 14 chr1 78805529 78805986 -118389446 - Lx LINE L1 -119 6535 6022 6 1186 416 196 22 44 chr1 78806229 78806410 -118389022 + (TATG)n Simple_repeat Simple_repeat 2 178 0 6 1186 351 0 0 0 chr1 78806432 78806471 -118388961 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1186 227 329 25 0 chr1 78807178 78807257 -118388175 - L2a LINE L2 -2 3424 3344 6 1186 323 304 18 0 chr1 78807447 78807559 -118387873 - LTR78 LTR ERV1 -47 1257 1144 6 1186 302 264 27 14 chr1 78807563 78807636 -118387796 + B3 SINE B2 2 75 -141 6 1186 514 288 30 20 chr1 78807688 78807890 -118387542 + RMER15 LTR ERVL 359 562 -13 6 1186 438 261 62 88 chr1 78807911 78807943 -118387489 - B2_Mm2 SINE B2 -7 188 158 6 1186 219 69 0 0 chr1 78807943 78807972 -118387460 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1186 712 256 26 2 chr1 78807972 78808132 -118387300 - B3A SINE B2 -38 160 1 6 1186 266 340 0 0 chr1 78808132 78808229 -118387203 + MIR SINE MIR 161 257 -5 6 1186 587 306 167 0 chr1 78809406 78809651 -118385781 + B4A SINE B4 7 292 0 6 1186 191 216 27 0 chr1 78809658 78809732 -118385700 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 6 1186 210 91 0 0 chr1 78809732 78809765 -118385667 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1186 528 202 52 9 chr1 78809908 78810023 -118385409 - B1_Mur1 SINE Alu -5 144 25 6 1186 392 331 40 20 chr1 78810172 78810320 -118385112 - B3A SINE B2 -3 195 45 7 1186 936 234 120 8 chr1 78810371 78810612 -118384820 + B4A SINE B4 2 269 -23 7 1186 654 13 0 0 chr1 78810612 78810687 -118384745 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1186 2994 33 3 16 chr1 78812683 78813055 -118382377 - L1Md_F2 LINE L1 0 6582 6216 7 1186 497 110 12 0 chr1 78813845 78813927 -118381505 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 7 1186 208 310 34 22 chr1 78815601 78815690 -118379742 + MIR SINE MIR 20 109 -99 7 1186 21 0 0 0 chr1 78816563 78816584 -118378848 + AT_rich Low_complexity Low_complexity 1 21 0 7 1186 207 0 0 0 chr1 78817267 78817290 -118378142 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1186 263 329 0 0 chr1 78819123 78819193 -118376239 + polypyrimidine Low_complexity Low_complexity 3 72 0 7 1186 1482 254 18 0 chr1 78819338 78819680 -118375752 + MTD LTR MaLR 33 380 -39 7 1186 227 392 38 25 chr1 78820371 78820528 -118374904 - MIR3 SINE MIR -22 186 28 7 1186 332 287 138 8 chr1 78821398 78821528 -118373904 - MLT1A1 LTR MaLR -2 406 260 7 1186 369 0 0 0 chr1 78822695 78822736 -118372696 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1186 432 267 0 48 chr1 78822902 78823028 -118372404 + MTE2a LTR MaLR 57 176 -203 7 1186 811 276 79 19 chr1 78823017 78823283 -118372149 + RMER5 LTR ERV1 246 527 -7 7 1186 555 43 0 0 chr1 78823775 78823845 -118371587 + (CAACC)n Simple_repeat Simple_repeat 4 73 0 7 1186 909 107 31 12 chr1 78824408 78824569 -118370863 - RLTR10 LTR ERVK 0 390 227 7 1186 265 81 0 88 chr1 78824570 78824638 -118370794 - RLTR10 LTR ERVK -70 320 259 7 1186 2296 50 9 6 chr1 78824669 78824989 -118370443 - RLTR10 LTR ERVK -69 321 1 7 1186 17476 24 1 19 chr1 78824991 78827028 -118368404 - RLTR10-int LTR ERVK -3 1984 10 7 1186 909 107 31 12 chr1 78827030 78827191 -118368241 - RLTR10 LTR ERVK 0 390 227 7 1186 265 81 0 88 chr1 78827192 78827260 -118368172 - RLTR10 LTR ERVK -70 320 259 7 1186 2296 50 9 6 chr1 78827291 78827611 -118367821 - RLTR10 LTR ERVK -69 321 1 7 1186 216 159 45 0 chr1 78827943 78827987 -118367445 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 7 1186 595 302 117 61 chr1 78828636 78828963 -118366469 + Lx8 LINE L1 6989 7325 -148 7 1186 528 16 0 0 chr1 78828963 78829024 -118366408 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1186 595 294 127 66 chr1 78829024 78829140 -118366292 + Lx8 LINE L1 7326 7470 -3 7 1186 573 279 105 126 chr1 78829226 78829354 -118366078 + MTE2a LTR MaLR 1 104 -275 7 1186 2521 73 36 17 chr1 78829354 78829715 -118365717 - Lx3_Mus LINE L1 0 7009 6642 7 1186 573 279 105 126 chr1 78829715 78829968 -118365464 + MTE2a LTR MaLR 105 373 -6 7 1186 420 268 54 63 chr1 78830575 78831030 -118364402 - Lx6 LINE L1 -1311 6162 5704 7 1186 224 204 0 0 chr1 78831030 78831079 -118364353 + CT-rich Low_complexity Low_complexity 2 50 0 7 1186 258 32 0 0 chr1 78831669 78831700 -118363732 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1186 3740 10 0 0 chr1 78832159 78832571 -118362861 - L1Md_A LINE L1 0 6582 6171 7 1186 468 269 206 17 chr1 78832660 78833008 -118362424 - L1M2 LINE L1 -103 5774 5366 7 1186 1786 224 57 21 chr1 78833019 78833406 -118362026 + MTD LTR MaLR 19 419 0 7 1186 2485 130 36 16 chr1 78833414 78833798 -118361634 + ORR1B1 LTR MaLR 3 394 0 7 1186 2246 284 84 68 chr1 78833808 78834993 -118360439 - L1M2 LINE L1 -744 5399 4196 7 1186 509 313 38 4 chr1 78835745 78835991 -118359441 - L1ME2 LINE L1 -2102 5893 5640 7 1186 411 73 0 0 chr1 78835991 78836046 -118359386 + (ATG)n Simple_repeat Simple_repeat 3 57 0 7 1186 411 320 70 15 chr1 78836046 78836322 -118359110 - L1ME2 LINE L1 -2356 5639 5328 7 1186 920 250 44 5 chr1 78836549 78836754 -118358678 - B3 SINE B2 -3 213 1 7 1186 252 0 0 0 chr1 78838991 78839019 -118356413 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1186 421 278 97 97 chr1 78839697 78839892 -118355540 + B3A SINE B2 2 196 -2 7 1186 2111 176 3 19 chr1 78839912 78840278 -118355154 - MTC LTR MaLR -51 370 11 7 1186 318 357 93 70 chr1 78840929 78841434 -118353998 - MLT1H LTR MaLR -25 524 1 7 1186 1175 287 66 27 chr1 78841779 78842262 -118353170 - RMER5 LTR ERV1 0 534 33 7 1186 351 0 0 0 chr1 78842878 78842917 -118352515 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1186 468 0 0 0 chr1 78842917 78842968 -118352464 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1186 241 248 224 37 chr1 78843221 78843355 -118352077 + MER20B DNA MER1_type 15 173 -610 7 1186 493 302 118 44 chr1 78843653 78843923 -118351509 - B4A SINE B4 0 292 3 7 1186 2665 191 189 15 chr1 78844391 78845048 -118350384 + RMER1B Other Other 223 1064 -2 7 1186 423 233 58 0 chr1 78845531 78845617 -118349815 + B1F2 SINE Alu 1 91 -58 7 1186 186 118 0 0 chr1 78845657 78845691 -118349741 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1186 193 389 22 0 chr1 78845773 78845863 -118349569 + MIR SINE MIR 58 149 -59 7 1186 478 315 54 95 chr1 78845872 78846167 -118349265 - ORR1E LTR MaLR 0 359 77 7 1186 294 257 35 95 chr1 78846247 78846363 -118349069 - ORR1E LTR MaLR -270 109 1 7 1186 1152 126 97 20 chr1 78846766 78846961 -118348471 + MTC LTR MaLR 1 210 -211 7 1186 2089 153 20 12 chr1 78846961 78847304 -118348128 + MTC LTR MaLR 22 367 -54 7 1186 1114 205 23 28 chr1 78847319 78847535 -118347897 + MTC LTR MaLR 196 410 -11 7 1186 3896 121 19 26 chr1 78847608 78848179 -118347253 - RMER2 LTR ERV1 0 567 1 7 1186 275 304 29 0 chr1 78848518 78848620 -118346812 - MIR SINE MIR -32 230 126 7 1186 593 263 64 49 chr1 78848652 78848940 -118346492 - MLT1B LTR MaLR -24 350 10 7 1186 196 322 79 22 chr1 78848941 78849030 -118346402 - MIRc SINE MIR -160 108 15 7 1186 296 319 123 9 chr1 78850229 78850343 -118345089 + MER2 DNA MER2_type 2 128 -217 7 1186 662 266 28 11 chr1 78850343 78850522 -118344910 - MTE2b LTR MaLR 0 379 198 7 1186 841 265 199 18 chr1 78852052 78852329 -118343103 + ORR1E LTR MaLR 33 359 0 7 1186 301 235 11 76 chr1 78852470 78852562 -118342870 + MTEb LTR MaLR 278 363 -16 7 1186 7855 75 3 22 chr1 78852777 78854264 -118341168 - L1_Mus1 LINE L1 0 6654 5104 7 1186 1178 95 0 0 chr1 78854264 78854411 -118341021 - B1_Mus1 SINE Alu 0 148 2 7 1186 6124 103 0 35 chr1 78854411 78854511 -118340921 - L1_Mus1 LINE L1 -780 5103 5014 7 1186 453 272 0 32 chr1 78854816 78855002 -118340430 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 7 1186 629 154 0 11 chr1 78855042 78855219 -118340213 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 7 1186 629 161 0 7 chr1 78855231 78855510 -118339922 + (TCTCTG)n Simple_repeat Simple_repeat 1 276 0 7 1186 259 235 73 12 chr1 78857493 78857575 -118337857 + L1MD2 LINE L1 6046 6132 -227 7 1186 387 0 0 0 chr1 78857578 78857621 -118337811 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1186 395 359 72 10 chr1 78857844 78858038 -118337394 - Arthur1 DNA Tip100 -3663 284 79 7 1186 501 17 0 0 chr1 78858101 78858159 -118337273 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1186 306 339 0 51 chr1 78858259 78858377 -118337055 - PB1D10 SINE Alu 0 117 6 7 1186 220 326 0 0 chr1 78858336 78858385 -118337047 - B4 SINE B4 -161 131 83 7 1186 432 0 0 0 chr1 78859317 78859365 -118336067 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1186 250 244 161 11 chr1 78859401 78859488 -118335944 - MLT1A LTR MaLR -4 386 287 7 1186 324 269 107 43 chr1 78859519 78859659 -118335773 - MLT1A LTR MaLR -222 152 4 7 1186 342 226 0 0 chr1 78860541 78860603 -118334829 - MER81 DNA AcHobo -31 83 22 7 1186 227 364 11 0 chr1 78862760 78862848 -118332584 + Tigger15a DNA TcMar 7 95 -620 7 1186 795 309 119 25 chr1 78862915 78863450 -118331982 - Tigger5 DNA MER2_type 0 2406 2092 7 1186 20566 148 63 38 chr1 78864051 78864682 -118330750 - L1VL4 LINE L1 -552 5331 4732 7 1186 1286 54 0 7 chr1 78864682 78864831 -118330601 - B1_Mus1 SINE Alu 0 148 1 7 1186 20566 148 63 38 chr1 78864831 78864914 -118330518 - L1VL4 LINE L1 -1152 4731 4638 7 1186 180 0 0 0 chr1 78864914 78864934 -118330498 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1186 20566 148 63 38 chr1 78864934 78866559 -118328873 - L1VL4 LINE L1 -1246 4637 3062 7 1186 4478 45 0 2 chr1 78866559 78867068 -118328364 - L1Md_F2 LINE L1 -1 6581 6074 7 1186 20566 148 55 35 chr1 78867068 78869256 -118326176 - L1VL4 LINE L1 -2822 3061 701 7 1186 529 260 91 7 chr1 78869408 78869672 -118325760 - Lx8 LINE L1 -6 7467 7149 7 1186 531 147 0 0 chr1 78869808 78869910 -118325522 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 7 1186 265 384 10 0 chr1 78869987 78870086 -118325346 - LTR33B LTR ERVL -44 459 360 7 1186 1648 265 49 77 chr1 78870251 78870799 -118324633 - MT2A LTR ERVL 0 533 1 7 1186 537 121 0 0 chr1 78870879 78870962 -118324470 + (TA)n Simple_repeat Simple_repeat 2 84 0 7 1186 440 310 54 8 chr1 78871139 78871269 -118324163 + RSINE1 SINE B4 3 138 -27 7 1186 1368 186 108 43 chr1 78871322 78871692 -118323740 - MT2B LTR ERVL 0 601 129 7 1186 2559 66 0 0 chr1 78871692 78871996 -118323436 + L1_Mus1 LINE L1 6257 6560 -7 7 1186 827 263 174 84 chr1 78871996 78872114 -118323318 - MT2B LTR ERVL -405 128 1 7 1186 518 302 91 88 chr1 78872147 78872466 -118322966 - ORR1E LTR MaLR -4 355 36 7 1186 247 281 113 51 chr1 78873061 78873166 -118322266 + RMER17D LTR ERVK 176 300 -589 7 1186 1439 51 6 11 chr1 78873166 78873530 -118321902 + (TTTC)n Simple_repeat Simple_repeat 1 361 0 7 1186 247 281 113 51 chr1 78873530 78873614 -118321818 + RMER17D LTR ERVK 301 378 -511 7 1186 608 332 50 4 chr1 78874038 78874277 -118321155 + MLT2C1 LTR ERVL 18 267 -130 7 1186 183 129 0 0 chr1 78874312 78874343 -118321089 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 7 1186 1162 159 124 0 chr1 78874415 78874616 -118320816 - URR1A DNA MER1_type 0 226 1 7 1186 201 379 52 0 chr1 78874664 78874780 -118320652 + L2a LINE L2 3305 3426 0 7 1186 1235 50 0 0 chr1 78875045 78875185 -118320247 + B1_Mus2 SINE Alu 1 140 -7 7 1186 450 0 0 0 chr1 78875185 78875235 -118320197 + (CCA)n Simple_repeat Simple_repeat 1 50 0 7 1186 537 16 0 0 chr1 78875496 78875558 -118319874 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1186 186 118 38 38 chr1 78875595 78875648 -118319784 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 7 1186 507 244 287 0 chr1 78875655 78875819 -118319613 - B3 SINE B2 -5 211 1 7 1186 604 315 33 37 chr1 78876012 78876256 -118319176 - LTR40a LTR ERVL -251 268 26 7 1186 209 296 114 82 chr1 78876525 78876709 -118318723 - MIR SINE MIR -8 254 65 7 1186 1136 311 43 66 chr1 78877029 78877497 -118317935 + MT2A LTR ERVL 1 457 -76 8 1186 396 40 0 0 chr1 78877499 78877549 -118317883 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1186 321 26 0 0 chr1 78877549 78877586 -118317846 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1186 311 279 129 53 chr1 78877682 78877852 -118317580 - MLT1B LTR MaLR -205 185 3 8 1186 612 352 39 32 chr1 78878053 78878503 -118316929 - MLT1E1A LTR MaLR -5 675 285 8 1186 465 198 0 0 chr1 78880555 78880661 -118314771 + (CCA)n Simple_repeat Simple_repeat 2 107 0 8 1186 936 212 14 47 chr1 78881040 78881082 -118314350 - ORR1C2 LTR MaLR 0 384 348 8 1186 1410 249 176 61 chr1 78881082 78881560 -118313872 + MT2A LTR ERVL 1 533 0 8 1186 936 212 15 49 chr1 78881560 78881733 -118313699 - ORR1C2 LTR MaLR -37 347 161 8 1186 495 0 0 0 chr1 78881733 78881788 -118313644 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 8 1186 814 251 83 161 chr1 78881788 78881844 -118313588 - ORR1C2 LTR MaLR -207 160 146 8 1186 201 94 0 0 chr1 78881844 78881876 -118313556 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 8 1186 814 251 83 161 chr1 78881876 78882000 -118313432 - ORR1C2 LTR MaLR -222 145 1 8 1186 306 200 0 0 chr1 78882017 78882072 -118313360 - ORR1C2-int LTR MaLR 0 1509 1455 8 1186 1270 231 95 16 chr1 78882070 78882386 -118313046 - ORR1C2-int LTR MaLR -1168 341 1 8 1186 1044 187 11 0 chr1 78882386 78882573 -118312859 - ORR1C2 LTR MaLR 0 384 196 8 1186 645 14 0 0 chr1 78882573 78882647 -118312785 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1186 611 133 20 0 chr1 78882659 78882757 -118312675 - ORR1C2 LTR MaLR -270 108 9 8 1186 210 376 40 0 chr1 78882765 78882866 -118312566 + MIRb SINE MIR 88 192 -76 8 1186 300 27 0 0 chr1 78883007 78883044 -118312388 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 8 1186 586 91 0 11 chr1 78883050 78883139 -118312293 - Lx LINE L1 -8 6646 6559 8 1186 5266 115 42 0 chr1 78883139 78883905 -118311527 - Lx LINE L1 -268 6386 5589 8 1186 2302 80 25 13 chr1 78884577 78884894 -118310538 - L1_Mus3 LINE L1 -2 6636 6316 8 1186 642 174 0 0 chr1 78884894 78885015 -118310417 + L1_Mm LINE L1 5235 5355 -528 8 1186 1056 6 34 34 chr1 78885131 78885310 -118310122 + (GA)n Simple_repeat Simple_repeat 2 180 0 8 1186 526 296 59 0 chr1 78886413 78886565 -118308867 + B3A SINE B2 8 168 -30 8 1186 447 19 0 0 chr1 78886862 78886914 -118308518 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 8 1186 1446 174 60 96 chr1 78886915 78887323 -118308109 + MTD LTR MaLR 18 403 -16 8 1186 575 308 14 7 chr1 78887411 78887558 -118307874 - ID_B1 SINE B4 0 224 77 8 1186 21 36 0 0 chr1 78888781 78888809 -118306623 + AT_rich Low_complexity Low_complexity 1 28 0 8 1186 642 282 116 24 chr1 78892416 78892667 -118302765 - MTC LTR MaLR 0 421 148 8 1186 522 325 73 35 chr1 78893039 78893310 -118302122 + MLT1B LTR MaLR 8 289 -101 8 1186 6045 141 61 9 chr1 78893310 78894355 -118301077 - RLTR25A LTR ERVK 0 1103 4 8 1186 261 207 146 22 chr1 78894359 78894448 -118300984 + MLT1B LTR MaLR 267 366 -8 8 1186 282 193 0 0 chr1 78895161 78895218 -118300214 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 8 1186 588 65 0 0 chr1 78895218 78895295 -118300137 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1186 737 221 90 6 chr1 78895441 78895618 -118299814 + B3A SINE B2 1 192 -6 8 1186 24 32 0 0 chr1 78896112 78896143 -118299289 + AT_rich Low_complexity Low_complexity 1 31 0 8 1186 646 252 0 25 chr1 78896435 78896634 -118298798 - Lx6 LINE L1 -27 7433 7240 8 1186 216 163 0 0 chr1 78896736 78896779 -118298653 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1186 528 296 75 55 chr1 78896794 78896994 -118298438 - B4A SINE B4 -5 287 84 8 1186 192 302 75 30 chr1 78897446 78897579 -118297853 + MIRb SINE MIR 77 215 -53 8 1186 257 200 29 0 chr1 78897822 78897892 -118297540 + CT-rich Low_complexity Low_complexity 3 74 0 8 1186 368 241 46 0 chr1 78897907 78897994 -118297438 - B1F SINE Alu -26 123 33 8 1186 2887 332 52 22 chr1 78898281 78899404 -118296028 - Lx8 LINE L1 -146 7327 6192 8 1186 186 43 0 0 chr1 78899404 78899427 -118296005 + (TATG)n Simple_repeat Simple_repeat 2 24 0 8 1186 2887 319 60 16 chr1 78899427 78899827 -118295605 - Lx8 LINE L1 -1282 6191 5761 8 1186 768 159 0 0 chr1 78900195 78900371 -118295061 + (CA)n Simple_repeat Simple_repeat 2 177 0 8 1186 306 203 325 6 chr1 78900471 78900643 -118294789 + L1MA9 LINE L1 6086 6312 0 8 1186 2463 218 39 2 chr1 78901215 78901777 -118293655 + Lx9 LINE L1 6898 7480 -164 8 1186 443 48 16 0 chr1 78901779 78901841 -118293591 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1186 225 296 0 0 chr1 78902084 78902182 -118293250 + CT-rich Low_complexity Low_complexity 2 99 0 8 1186 230 250 62 12 chr1 78902805 78902886 -118292546 - MTEa LTR MaLR -12 362 278 8 1186 265 320 27 130 chr1 78902900 78902971 -118292461 - MLT2B5 LTR ERVL -337 380 175 8 1186 404 330 49 55 chr1 78902971 78903154 -118292278 - MTEa LTR MaLR -197 182 1 8 1186 234 291 48 19 chr1 78903266 78903371 -118292061 + MLT2B4 LTR ERVL 18 125 -431 8 1186 1172 284 68 49 chr1 78903371 78903694 -118291738 + MTEa LTR MaLR 1 329 -50 8 1186 180 0 0 0 chr1 78903694 78903714 -118291718 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1186 1172 284 68 49 chr1 78903714 78903760 -118291672 + MTEa LTR MaLR 330 376 -3 8 1186 424 274 89 71 chr1 78903946 78904151 -118291281 - B3A SINE B2 -21 195 2 8 1186 23 33 0 0 chr1 78904161 78904191 -118291241 + AT_rich Low_complexity Low_complexity 1 30 0 8 1186 205 29 29 29 chr1 78904244 78904279 -118291153 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1186 240 86 0 0 chr1 78904941 78904976 -118290456 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1186 571 202 61 23 chr1 78904977 78905109 -118290323 - B4A SINE B4 -38 254 118 8 1186 1544 52 0 0 chr1 78905126 78905318 -118290114 - L1Md_F2 LINE L1 -359 6223 6032 8 148 2718 70 3 0 chr1 78905319 78905677 -118289755 + L1Md_F2 LINE L1 6224 6582 0 8 1187 277 281 0 0 chr1 78905695 78905759 -118289673 - B4A SINE B4 -221 71 8 8 1187 242 289 37 37 chr1 78906912 78907020 -118288412 + Lx8 LINE L1 7162 7269 -204 8 1187 253 100 89 0 chr1 78907278 78907368 -118288064 + (TATAA)n Simple_repeat Simple_repeat 1 98 0 8 1187 5003 214 60 33 chr1 78907465 78907931 -118287501 - RMER12 LTR ERVK 0 1322 834 8 1187 183 80 0 0 chr1 78907931 78907956 -118287476 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 8 1187 5003 214 60 33 chr1 78907956 78908021 -118287411 - RMER12 LTR ERVK -489 833 769 8 1187 468 51 0 0 chr1 78908021 78908080 -118287352 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 8 1187 5003 214 60 33 chr1 78908080 78908834 -118286598 - RMER12 LTR ERVK -554 768 2 8 1187 29 28 0 0 chr1 78908873 78908909 -118286523 + AT_rich Low_complexity Low_complexity 1 36 0 8 1187 372 296 0 0 chr1 78908909 78908990 -118286442 - MLT1B LTR MaLR -14 376 296 8 1187 1571 193 12 25 chr1 78908996 78909315 -118286117 + MTD LTR MaLR 91 405 -14 8 1187 347 287 0 65 chr1 78909326 78909479 -118285953 + L1M4 LINE L1 2419 2561 -3585 8 1187 1246 193 47 7 chr1 78909482 78909831 -118285601 - Lx2B LINE L1 0 7000 6569 8 1187 858 280 72 26 chr1 78909856 78910497 -118284935 + L1M4 LINE L1 2580 3249 -2897 8 1187 1447 208 85 27 chr1 78910516 78910892 -118284540 + Lx8 LINE L1 7073 7470 -3 8 1187 792 223 18 97 chr1 78911227 78911455 -118283977 + B3 SINE B2 1 210 -6 8 1187 597 234 28 28 chr1 78911526 78911671 -118283761 - B1_Mur4 SINE Alu -5 145 1 8 1187 385 255 0 9 chr1 78911721 78911828 -118283604 + L1M4 LINE L1 3457 3562 -2584 8 1187 978 262 104 38 chr1 78911935 78912280 -118283152 + RMER15 LTR ERVL 208 575 0 8 1187 1683 179 90 23 chr1 78912295 78912684 -118282748 - MTD LTR MaLR 0 419 5 8 1187 23 0 0 0 chr1 78914361 78914384 -118281048 + AT_rich Low_complexity Low_complexity 1 23 0 8 1187 195 129 0 0 chr1 78914409 78914440 -118280992 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 8 1187 348 24 0 0 chr1 78914458 78914499 -118280933 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1187 482 236 0 0 chr1 78914517 78914606 -118280826 - RSINE1 SINE B4 -68 97 9 8 1187 1319 198 119 0 chr1 78914668 78914961 -118280471 + ORR1D1 LTR MaLR 29 356 -18 8 1187 831 273 158 23 chr1 78915117 78915376 -118280056 + RMER15 LTR ERVL 282 575 0 8 1187 909 147 0 14 chr1 78915744 78915882 -118279550 + B1_Mus1 SINE Alu 1 138 -10 8 1187 432 0 0 0 chr1 78915882 78915930 -118279502 + (CAA)n Simple_repeat Simple_repeat 2 49 0 8 1187 405 0 0 0 chr1 78916139 78916184 -118279248 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1187 376 301 52 0 chr1 78916918 78917054 -118278378 + Lx8 LINE L1 7058 7200 -273 8 1187 242 241 37 0 chr1 78917175 78917229 -118278203 + MER44D DNA MER2_type 49 104 -601 8 1187 441 36 0 0 chr1 78917229 78917284 -118278148 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1187 516 263 0 9 chr1 78917731 78917846 -118277586 + MER44D DNA MER2_type 561 674 -31 8 1187 657 221 115 12 chr1 78917920 78918085 -118277347 - B3A SINE B2 -16 182 1 8 1187 610 213 0 3 chr1 78918357 78918464 -118276968 + PB1D7 SINE Alu 6 112 -8 8 1187 375 263 206 63 chr1 78918464 78918476 -118276956 + ID_B1 SINE B4 124 223 -1 8 1187 928 144 207 5 chr1 78918780 78918968 -118276464 - URR1A DNA MER1_type 0 226 1 8 1187 590 26 13 0 chr1 78919637 78919713 -118275719 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 1187 190 29 28 56 chr1 78919881 78919917 -118275515 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 8 1187 1297 136 17 75 chr1 78920250 78920489 -118274943 + URR1A DNA MER1_type 1 225 -1 8 1187 246 264 0 0 chr1 78920507 78920560 -118274872 - MT2A LTR ERVL -232 301 249 8 1187 421 362 6 6 chr1 78920583 78920744 -118274688 - MT2A LTR ERVL -370 163 3 8 1187 246 290 38 57 chr1 78921102 78921208 -118274224 - Kanga1d DNA Tc2 -4 605 506 8 1187 269 346 219 13 chr1 78921384 78921539 -118273893 - Kanga1d DNA Tc2 -338 271 85 8 1187 709 211 7 39 chr1 78921834 78921987 -118273445 + B1_Mur2 SINE Alu 1 148 -1 8 1187 1188 276 74 33 chr1 78923222 78923237 -118272195 - Lx6 LINE L1 -9 7451 7438 8 1187 255 61 0 0 chr1 78923237 78923270 -118272162 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1187 1188 276 74 33 chr1 78923270 78923738 -118271694 - Lx6 LINE L1 -23 7437 6948 8 1187 225 159 0 0 chr1 78924351 78924395 -118271037 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 8 1187 387 0 0 0 chr1 78924454 78924497 -118270935 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1187 1054 203 183 19 chr1 78925294 78925467 -118269965 + Lx6 LINE L1 7087 7256 -204 8 1187 449 34 0 17 chr1 78925467 78925527 -118269905 + (CTTAT)n Simple_repeat Simple_repeat 2 60 0 8 1187 1054 203 183 19 chr1 78925527 78925665 -118269767 + Lx6 LINE L1 7257 7448 -12 8 1187 6854 37 9 1 chr1 78925655 78926523 -118268909 - L1Md_F3 LINE L1 -2 6582 5708 8 1187 233 312 0 0 chr1 78927308 78927372 -118268060 + T-rich Low_complexity Low_complexity 1 64 0 8 1187 1180 75 0 0 chr1 78927373 78927520 -118267912 - B1_Mus2 SINE Alu 0 147 1 8 1187 235 125 282 77 chr1 78928272 78928350 -118267082 - Lx8 LINE L1 -125 7348 7255 8 1187 1396 242 48 96 chr1 78928629 78929045 -118266387 - MTD LTR MaLR -5 414 19 9 1187 2021 122 145 3 chr1 78929447 78929792 -118265640 - ORR1B1 LTR MaLR 0 394 1 9 1187 207 285 146 35 chr1 78930103 78930274 -118265158 - MIRb SINE MIR -32 236 47 9 1187 450 53 0 0 chr1 78930491 78930548 -118264884 + (TTA)n Simple_repeat Simple_repeat 3 59 0 9 1187 210 304 35 81 chr1 78930556 78930642 -118264790 - RSINE1 SINE B4 -2 163 82 9 1187 260 287 191 45 chr1 78931179 78931336 -118264096 + MIRb SINE MIR 29 208 -60 9 1187 312 284 54 0 chr1 78932500 78932574 -118262858 - B4A SINE B4 0 292 215 9 1187 415 357 73 80 chr1 78932607 78932688 -118262744 - B4 SINE B4 0 292 213 9 1187 4339 53 0 0 chr1 78932688 78933216 -118262216 - L1_Mus1 LINE L1 -2 6565 6038 9 1187 420 312 70 48 chr1 78933216 78933423 -118262009 - B4A SINE B4 -80 212 6 9 1187 845 254 33 52 chr1 78933430 78933642 -118261790 - B4A SINE B4 -65 227 20 9 1187 884 285 115 21 chr1 78934766 78935149 -118260283 - MTD LTR MaLR 0 419 1 9 1187 23 33 0 0 chr1 78935460 78935490 -118259942 + AT_rich Low_complexity Low_complexity 1 30 0 9 1187 279 0 0 0 chr1 78935623 78935654 -118259778 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1187 1107 209 42 63 chr1 78935656 78935988 -118259444 - Lx8 LINE L1 -420 7053 6729 9 1187 552 309 192 44 chr1 78935989 78936347 -118259085 + Kanga1a DNA Tc2 133 543 -211 9 1187 344 322 21 48 chr1 78937192 78937378 -118258054 + B3A SINE B2 2 182 -16 9 1187 206 32 0 31 chr1 78937780 78937812 -118257620 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1187 324 279 62 31 chr1 78938787 78938883 -118256549 - B1F1 SINE Alu -39 110 12 9 1187 291 314 30 106 chr1 78938883 78938919 -118256513 - ID_B1 SINE B4 -36 188 67 9 1187 1620 239 26 41 chr1 78939495 78939883 -118255549 + MTD LTR MaLR 7 388 -31 9 1187 700 250 22 17 chr1 78940404 78940636 -118254796 + L1MB2 LINE L1 5625 5857 -314 9 1187 302 317 124 55 chr1 78943003 78943175 -118252257 - MLT1A1 LTR MaLR 0 408 224 9 1187 827 10 10 0 chr1 78943175 78943275 -118252157 + (CA)n Simple_repeat Simple_repeat 2 102 0 9 1187 302 317 124 55 chr1 78943275 78943359 -118252073 - MLT1A1 LTR MaLR -185 223 134 9 1187 250 354 88 96 chr1 78944159 78944409 -118251023 - MLT1J LTR MaLR -20 492 245 9 1187 197 343 124 22 chr1 78944879 78945153 -118250279 - L2 LINE L2 -1634 1785 1484 9 1187 305 286 33 74 chr1 78945558 78945679 -118249753 - L4 LINE RTE -183 1846 1731 9 1187 42110 5 0 0 chr1 78945680 78952026 -118243406 - L1Md_A LINE L1 0 6582 237 9 1187 312 364 97 20 chr1 78952027 78952377 -118243055 - L4 LINE RTE -285 1744 1368 9 1187 208 246 16 81 chr1 78952473 78952535 -118242897 - L2a LINE L2 -47 3379 3322 9 1187 2210 167 77 0 chr1 78953180 78953546 -118241886 - ORR1B1 LTR MaLR 0 394 1 9 1187 1246 61 7 0 chr1 78954110 78954257 -118241175 + B1_Mus1 SINE Alu 1 148 0 9 1187 1164 89 0 0 chr1 78955022 78955202 -118240230 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 1187 297 0 0 0 chr1 78955682 78955715 -118239717 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1187 234 0 0 0 chr1 78956132 78956158 -118239274 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1187 541 287 106 35 chr1 78956183 78956353 -118239079 + B3A SINE B2 1 182 -16 9 1187 595 261 12 0 chr1 78956538 78956703 -118238729 - Lx9 LINE L1 0 7644 7478 9 1187 675 146 0 0 chr1 78956704 78956834 -118238598 + (CA)n Simple_repeat Simple_repeat 2 131 0 9 1187 260 155 86 0 chr1 78956834 78956892 -118238540 + Lx9 LINE L1 7404 7466 -178 9 1187 534 356 68 18 chr1 78957149 78957546 -118237886 + L1ME3B LINE L1 4850 5266 -880 9 1187 318 199 60 51 chr1 78957516 78957690 -118237742 + L1M2 LINE L1 5289 5455 -904 9 1187 859 304 3 119 chr1 78957691 78958019 -118237413 + B4A SINE B4 2 291 -1 9 1187 282 295 92 20 chr1 78958270 78958422 -118237010 + L1ME3B LINE L1 5732 5894 -346 9 1187 520 318 68 50 chr1 78958735 78959016 -118236416 - Lx8 LINE L1 -3 7470 7185 9 1187 969 253 111 23 chr1 78959098 78959445 -118235987 + MTD LTR MaLR 6 405 -14 9 1187 462 308 16 126 chr1 78959458 78959640 -118235792 + MTE2a LTR MaLR 8 169 -210 9 1187 1003 123 37 0 chr1 78960173 78960335 -118235097 + URR1A DNA MER1_type 58 225 -1 9 1187 5961 112 28 21 chr1 78961162 78962026 -118233406 + Lx LINE L1 5785 6654 0 9 1187 301 379 94 6 chr1 78962409 78962579 -118232853 + LTR16E1 LTR ERVL 154 338 -200 9 1187 788 252 38 129 chr1 78962579 78962944 -118232488 + MTE2a LTR MaLR 1 332 -47 9 1187 443 327 23 29 chr1 78964746 78964919 -118230513 + LTR16E1 LTR ERVL 365 536 -2 9 1187 552 175 75 100 chr1 78965881 78966062 -118229370 + ORR1B1 LTR MaLR 1 195 -199 9 1187 1470 172 31 128 chr1 78966064 78966424 -118229008 - ORR1A4 LTR MaLR -4 325 1 9 1187 273 274 113 22 chr1 78967173 78967343 -118228089 - MIR SINE MIR 0 262 69 9 1187 1765 127 19 8 chr1 78967723 78967985 -118227447 + Lx3B LINE L1 6708 6972 -1 9 1187 194 136 0 22 chr1 78968359 78968404 -118227028 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1187 261 196 0 0 chr1 78968481 78968537 -118226895 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1187 410 282 64 0 chr1 78968680 78968790 -118226642 - ID_B1 SINE B4 -105 119 3 9 1187 700 164 11 0 chr1 78969073 78969250 -118226182 + CT-rich Low_complexity Low_complexity 2 180 0 9 1187 4165 39 0 0 chr1 78969291 78969752 -118225680 - L1Md_T LINE L1 -12 6570 6110 9 1187 1316 166 71 34 chr1 78969752 78970020 -118225412 + RLTR15 LTR ERVK 50 327 -32 9 1187 976 72 7 14 chr1 78970011 78970152 -118225280 + RLTR15 LTR ERVK 220 359 0 9 1187 22 0 0 0 chr1 78970278 78970300 -118225132 + AT_rich Low_complexity Low_complexity 1 22 0 9 1187 1330 91 17 6 chr1 78970421 78970597 -118224835 + B2_Mm2 SINE B2 1 178 -17 9 1187 378 42 0 0 chr1 78970599 78970647 -118224785 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1187 260 246 16 0 chr1 78970857 78970918 -118224514 - ID SINE ID -161 63 2 9 1187 311 320 242 0 chr1 78970936 78971089 -118224343 + Tigger5 DNA MER2_type 59 248 -2158 9 1187 435 283 9 9 chr1 78971073 78971187 -118224245 + Tigger5 DNA MER2_type 2293 2406 0 9 1187 349 212 50 0 chr1 78971737 78971817 -118223615 - L1MC1 LINE L1 -194 6139 6056 9 1187 1922 158 50 22 chr1 78972115 78972477 -118222955 - Lx9 LINE L1 -8 7636 7265 9 1187 222 128 0 0 chr1 78972533 78972572 -118222860 + (CATA)n Simple_repeat Simple_repeat 4 42 0 9 1187 482 240 0 0 chr1 78972588 78972692 -118222740 - Lx9 LINE L1 -203 7441 7338 9 1187 738 286 22 6 chr1 78972791 78972970 -118222462 - B3A SINE B2 -16 182 1 9 1187 2759 238 98 12 chr1 78973098 78973757 -118221675 - Tigger1 DNA MER2_type -674 1744 1024 9 1187 916 242 136 60 chr1 78973757 78974109 -118221323 - MTE2a LTR MaLR 0 379 1 9 1187 2759 238 98 12 chr1 78974109 78974181 -118221251 - Tigger1 DNA MER2_type -1395 1023 950 9 1187 2014 164 9 84 chr1 78974182 78974275 -118221157 + ORR1B1 LTR MaLR 1 70 -324 9 1187 4840 50 0 9 chr1 78974275 78974840 -118220592 - L1Md_F2 LINE L1 -1 6581 6022 9 1187 2014 164 9 84 chr1 78974840 78975172 -118220260 + ORR1B1 LTR MaLR 71 394 0 9 1187 2880 274 66 15 chr1 78975172 78976054 -118219378 - Tigger1 DNA MER2_type -1465 953 27 9 1187 847 349 85 0 chr1 78976208 78976538 -118218894 - MLT2B1 LTR ERVL -126 394 37 9 1187 293 24 49 0 chr1 78976539 78976580 -118218852 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1187 823 141 14 14 chr1 78978319 78978463 -118216969 + B1_Mus1 SINE Alu 5 148 0 9 1187 779 275 104 14 chr1 78978531 78978878 -118216554 + L1ME3 LINE L1 5691 6068 -94 9 1187 249 271 150 71 chr1 78979011 78979138 -118216294 - MER113 DNA MER1_type -263 258 122 9 1187 2840 141 69 6 chr1 78979869 78980391 -118215041 - RMER6A LTR ERVK 0 756 202 9 1187 41609 15 3 7 chr1 78980411 78986997 -118208435 - L1Md_A LINE L1 -1 6581 25 9 1187 1313 122 0 74 chr1 78986997 78987228 -118208204 - RMER6A LTR ERVK -542 214 1 9 1187 22 56 0 0 chr1 78987553 78987589 -118207843 + AT_rich Low_complexity Low_complexity 1 36 0 9 1187 1061 140 6 8 chr1 78988098 78988456 -118206976 + (TCCA)n Simple_repeat Simple_repeat 1 356 0 9 1187 420 20 0 0 chr1 78988471 78988520 -118206912 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 9 1187 541 231 111 0 chr1 78988520 78988626 -118206806 - ID_B1 SINE B4 -8 216 99 9 1187 1419 162 4 4 chr1 78988626 78988861 -118206571 - RLTR11B LTR ERVK 0 453 219 9 1187 1712 118 4 4 chr1 78988865 78989121 -118206311 + RLTR11A2 LTR ERVK 272 527 0 9 1187 320 276 0 11 chr1 78989154 78989242 -118206190 + (TATG)n Simple_repeat Simple_repeat 4 90 0 9 1187 1692 254 5 16 chr1 78989345 78989721 -118205711 + Lx8 LINE L1 6967 7338 -135 9 1187 469 331 59 18 chr1 78990284 78990453 -118204979 + MER20 DNA MER1_type 40 215 -4 9 1187 680 97 26 0 chr1 78990598 78990711 -118204721 + (GAAAA)n Simple_repeat Simple_repeat 2 117 0 9 1187 23380 24 1 1 chr1 78991371 78994759 -118200673 - L1Md_T LINE L1 0 6582 3197 9 1187 567 281 90 84 chr1 78994891 78995190 -118200242 + Lx8 LINE L1 7077 7377 -96 9 1187 442 276 135 97 chr1 78996541 78996778 -118198654 + MLT1F2 LTR MaLR 30 275 -285 9 1187 358 274 44 84 chr1 78996809 78996967 -118198465 + MLT1F2 LTR MaLR 404 560 0 9 1187 601 260 112 67 chr1 78997150 78997418 -118198014 + B4A SINE B4 3 282 -10 9 1187 437 0 19 0 chr1 78997486 78997539 -118197893 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1187 674 127 31 12 chr1 78998012 78998129 -118197303 + ORR1B2 LTR MaLR 1 146 -232 9 1187 3705 106 8 2 chr1 78998129 78998620 -118196812 - L1_Mus4 LINE L1 -18 6618 6125 9 1187 372 193 242 94 chr1 78998620 78998651 -118196781 + ORR1B2 LTR MaLR 147 171 -207 9 1187 2047 93 83 3 chr1 78998651 78998965 -118196467 + L1_Mus4 LINE L1 5722 6060 -576 9 1187 1328 182 33 0 chr1 78998965 78999207 -118196225 + ORR1B2 LTR MaLR 110 359 -8 9 1187 237 139 0 0 chr1 78999650 78999693 -118195739 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1187 855 323 30 54 chr1 78999696 78999991 -118195441 - B4A SINE B4 -4 288 1 9 1187 694 278 73 20 chr1 79000878 79001086 -118194346 - B4 SINE B4 -75 217 1 1 1187 440 327 9 0 chr1 79001555 79001662 -118193770 + RSINE1 SINE B4 1 108 -57 2 1187 429 20 0 0 chr1 79001679 79001729 -118193703 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1187 225 329 25 12 chr1 79002344 79002424 -118193008 - PB1D7 SINE Alu -35 85 5 4 1187 1031 0 8 0 chr1 79002496 79002615 -118192817 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 5 1187 219 300 20 0 chr1 79002628 79002678 -118192754 - ID4 SINE ID -4 79 29 6 1187 437 122 14 0 chr1 79002883 79002957 -118192475 + (TTCTCC)n Simple_repeat Simple_repeat 4 78 0 7 1187 781 207 0 30 chr1 79002963 79003132 -118192300 - B2_Mm2 SINE B2 -23 172 9 8 1187 367 325 60 25 chr1 79003823 79004022 -118191410 + Tigger14a DNA MER2_type 44 249 -75 9 1187 32118 100 21 9 chr1 79004568 79010839 -118184593 - L1Md_F2 LINE L1 -6 6576 217 1 1187 219 218 0 0 chr1 79010884 79010939 -118184493 + (TATG)n Simple_repeat Simple_repeat 4 58 0 1 1187 208 365 0 0 chr1 79010981 79011055 -118184377 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1187 691 305 64 39 chr1 79011063 79011346 -118184086 - B4A SINE B4 -2 290 1 1 1187 242 316 59 46 chr1 79013968 79014118 -118181314 + MIRm SINE MIR 11 166 -96 1 1187 182 37 37 0 chr1 79014410 79014437 -118180995 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1187 393 315 9 0 chr1 79014845 79014956 -118180476 - PB1D9 SINE Alu -8 112 1 1 1187 553 200 42 78 chr1 79015226 79015386 -118180046 - MTD LTR MaLR -12 407 215 1 1187 2310 79 28 3 chr1 79015386 79015705 -118179727 + IAPLTR2b LTR ERVK 1 327 0 1 1187 17508 71 62 52 chr1 79015706 79018444 -118176988 + IAPEz-int LTR ERVK 9 2774 -3707 1 1187 3003 19 0 0 chr1 79018442 79018802 -118176630 + IAPEz-int LTR ERVK 4001 4360 -2121 1 1187 5122 42 24 17 chr1 79018802 79019504 -118175928 + IAPEz-int LTR ERVK 5775 6481 0 1 1187 2310 79 28 3 chr1 79019504 79019823 -118175609 + IAPLTR2b LTR ERVK 1 327 0 1 1187 381 287 102 94 chr1 79019824 79020026 -118175406 - MTD LTR MaLR -195 184 18 1 1187 255 103 0 0 chr1 79020055 79020094 -118175338 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1187 526 284 37 61 chr1 79020169 79020465 -118174967 - BLACKJACK DNA AcHobo -466 2478 2190 2 1187 543 292 82 24 chr1 79020630 79020837 -118174595 + Lx8 LINE L1 7059 7277 -196 2 1187 9877 81 7 15 chr1 79020890 79022324 -118173108 + Lx3_Mus LINE L1 5587 7009 0 2 1187 411 21 0 0 chr1 79022336 79022384 -118173048 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1187 510 17 0 0 chr1 79022384 79022443 -118172989 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 2 1187 262 191 0 14 chr1 79022470 79022539 -118172893 + Lx8 LINE L1 7403 7470 -3 2 1187 25 51 0 0 chr1 79022643 79022682 -118172750 + AT_rich Low_complexity Low_complexity 1 39 0 2 1187 470 234 27 20 chr1 79022869 79023017 -118172415 - Lx4A LINE L1 -2 7056 6908 2 1187 24 32 0 0 chr1 79023117 79023148 -118172284 + AT_rich Low_complexity Low_complexity 1 31 0 2 1187 747 33 0 0 chr1 79023314 79023405 -118172027 + L1Md_A LINE L1 5496 5586 -297 2 1187 8695 20 0 0 chr1 79023405 79024399 -118171033 + L1Md_A LINE L1 5587 6580 -2 2 1187 825 108 27 0 chr1 79024584 79024732 -118170700 + (TCCC)n Simple_repeat Simple_repeat 3 154 0 3 1187 399 282 81 0 chr1 79024826 79024950 -118170482 - B4A SINE B4 -157 135 2 3 1187 1944 310 92 91 chr1 79024987 79025532 -118169900 - BLACKJACK DNA AcHobo -1286 1658 1138 2 1187 493 38 0 184 chr1 79025532 79025630 -118169802 - L1_Mus2 LINE L1 0 6566 6487 3 1187 1944 310 92 91 chr1 79025630 79026519 -118168913 - BLACKJACK DNA AcHobo -1807 1137 222 2 1187 3109 52 5 0 chr1 79026569 79026988 -118168444 - L1Md_F2 LINE L1 -1405 4478 4058 3 1187 8324 64 1 0 chr1 79026988 79028094 -118167338 + L1Md_F2 LINE L1 4480 5586 -297 3 1187 7796 60 2 4 chr1 79028094 79029080 -118166352 + L1Md_F2 LINE L1 5587 6570 -12 3 1187 1039 72 0 26 chr1 79029169 79029325 -118166107 + L1Md_F2 LINE L1 6408 6559 -23 3 1187 351 0 0 0 chr1 79029325 79029364 -118166068 + (TAA)n Simple_repeat Simple_repeat 1 39 0 3 1187 312 347 106 30 chr1 79029681 79029880 -118165552 + RMER15 LTR ERVL 347 560 -15 3 1187 2015 267 104 16 chr1 79029997 79030727 -118164705 - Lx6 LINE L1 -2 7458 6665 3 1187 20701 58 1 1 chr1 79030846 79034326 -118161106 - L1Md_F2 LINE L1 -12 6570 3090 3 1187 1324 264 45 21 chr1 79034897 79035233 -118160199 - ORR1D2 LTR MaLR 0 370 27 3 1187 1358 273 21 32 chr1 79035339 79035770 -118159662 - Lx8 LINE L1 -7 7466 7041 4 148 36695 34 0 3 chr1 79035830 79042031 -118153401 - L1Md_A LINE L1 0 6585 310 4 1188 212 231 0 0 chr1 79042167 79042206 -118153226 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1188 396 209 0 0 chr1 79042206 79042292 -118153140 + (CATA)n Simple_repeat Simple_repeat 2 87 0 4 1188 387 165 12 12 chr1 79043103 79043183 -118152249 - MTE2a LTR MaLR 0 379 300 4 1188 32 26 0 0 chr1 79043196 79043235 -118152197 + AT_rich Low_complexity Low_complexity 1 39 0 4 1188 23 33 0 0 chr1 79043397 79043427 -118152005 + AT_rich Low_complexity Low_complexity 1 30 0 4 1188 726 254 67 127 chr1 79043750 79044151 -118151281 - MTE2a LTR MaLR -2 377 1 4 1188 786 308 12 14 chr1 79044969 79045408 -118150024 + L1_Mur3 LINE L1 1429 1871 -4009 4 1188 2192 114 32 0 chr1 79045463 79045778 -118149654 - ORR1A2 LTR MaLR -2 325 1 4 1188 37 0 0 0 chr1 79045947 79045984 -118149448 + AT_rich Low_complexity Low_complexity 1 37 0 5 1188 963 103 26 6 chr1 79046051 79046207 -118149225 - L1_Mus4 LINE L1 -15 6621 6463 5 1188 22317 165 15 16 chr1 79046207 79051214 -118144218 - L1VL4 LINE L1 -169 5714 718 5 1188 709 315 49 25 chr1 79051353 79051564 -118143868 + L1_Rod LINE L1 4612 4820 -1027 5 1188 306 0 0 0 chr1 79051564 79051598 -118143834 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1188 709 315 49 25 chr1 79051598 79051751 -118143681 + L1_Rod LINE L1 4821 4984 -863 5 1188 504 0 0 0 chr1 79052211 79052267 -118143165 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1188 445 344 60 53 chr1 79052447 79052789 -118142643 + MLT1F2 LTR MaLR 65 523 -130 5 1188 240 269 104 0 chr1 79052855 79052922 -118142510 - ID4 SINE ID -9 74 1 5 1188 370 268 178 29 chr1 79052922 79053260 -118142172 + MTE2a LTR MaLR 3 379 0 5 1188 293 189 12 75 chr1 79053934 79054014 -118141418 - L2a LINE L2 -17 3409 3335 5 1188 858 301 34 11 chr1 79054652 79055001 -118140431 + ORR1E LTR MaLR 1 357 -2 6 1188 21 36 0 0 chr1 79055690 79055718 -118139714 + AT_rich Low_complexity Low_complexity 1 28 0 6 1188 251 320 0 0 chr1 79056046 79056121 -118139311 - Lx8 LINE L1 -1170 6303 6229 6 1188 1211 255 32 82 chr1 79056665 79057064 -118138368 - MTE2b LTR MaLR -14 405 18 6 1188 432 311 12 42 chr1 79057098 79057266 -118138166 + MLT1D LTR MaLR 339 501 -4 6 1188 214 333 49 93 chr1 79058112 79058173 -118137259 - B3A SINE B2 -1 197 135 6 1188 360 0 0 0 chr1 79058173 79058213 -118137219 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1188 214 333 49 93 chr1 79058213 79058239 -118137193 - B3A SINE B2 -64 134 2 6 1188 368 374 8 17 chr1 79058239 79058356 -118137076 - RSINE1 SINE B4 -47 118 3 6 1188 685 165 116 0 chr1 79059072 79059193 -118136239 - B1_Mur2 SINE Alu 0 149 15 6 1188 956 263 92 57 chr1 79059212 79059571 -118135861 + MTE2a LTR MaLR 2 362 -17 6 1188 348 351 9 1 chr1 79059585 79059695 -118135737 + B1_Mus1 SINE Alu 2 110 -7 7 1188 3357 210 167 18 chr1 79059781 79060669 -118134763 + RMER1B Other Other 44 1063 -3 7 1188 344 304 22 55 chr1 79060929 79061110 -118134322 + L2 LINE L2 2506 2680 -739 7 1188 702 92 28 21 chr1 79061309 79061454 -118133978 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 7 1188 731 148 7 0 chr1 79061456 79061591 -118133841 + CT-rich Low_complexity Low_complexity 3 138 0 7 1188 514 157 8 8 chr1 79062464 79062586 -118132846 + (TA)n Simple_repeat Simple_repeat 2 123 0 7 1188 1032 129 215 0 chr1 79062919 79063105 -118132327 - URR1A DNA MER1_type 0 226 1 7 1188 3865 193 14 39 chr1 79063434 79064249 -118131183 + Lx2B LINE L1 6203 6996 -4 7 1188 32 57 0 0 chr1 79064255 79064308 -118131124 + AT_rich Low_complexity Low_complexity 1 53 0 7 1188 310 384 71 65 chr1 79064590 79064899 -118130533 - LTR16B LTR ERVL -79 384 74 7 1188 1769 232 71 8 chr1 79064905 79065401 -118130031 + RLTR11A2 LTR ERVK 1 527 0 8 1188 188 357 15 58 chr1 79065626 79065763 -118129669 + MIRb SINE MIR 68 198 -70 8 1188 264 100 0 0 chr1 79066229 79066269 -118129163 + (ATTG)n Simple_repeat Simple_repeat 3 42 0 8 1188 4205 52 0 4 chr1 79066269 79066790 -118128642 - L1Md_F2 LINE L1 -11 6571 6053 8 1188 7688 47 2 0 chr1 79066858 79068085 -118127347 - L1Md_F2 LINE L1 0 6582 5354 8 1188 15408 69 1 1 chr1 79068081 79070196 -118125236 + L1Md_F2 LINE L1 3258 5371 -512 8 1188 310 407 33 13 chr1 79072279 79072431 -118123001 + RSINE1 SINE B4 11 165 0 8 1188 30 27 0 0 chr1 79072443 79072480 -118122952 + AT_rich Low_complexity Low_complexity 1 37 0 8 1188 370 277 48 63 chr1 79073348 79073523 -118121909 + MLT1A0 LTR MaLR 4 168 -240 8 1188 354 23 0 0 chr1 79073553 79073596 -118121836 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 8 1188 253 319 98 11 chr1 79073981 79074073 -118121359 + RSINE1 SINE B4 3 102 -63 8 1188 252 86 0 0 chr1 79074706 79074741 -118120691 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 9 1188 23 0 0 0 chr1 79075173 79075196 -118120236 + AT_rich Low_complexity Low_complexity 1 23 0 9 1188 206 333 94 16 chr1 79075524 79075652 -118119780 - MIRb SINE MIR -111 157 20 9 1188 414 0 0 0 chr1 79076615 79076661 -118118771 + (TTA)n Simple_repeat Simple_repeat 1 46 0 9 1188 526 175 123 20 chr1 79077396 79077542 -118117890 - Lx4A LINE L1 0 7058 6898 9 1188 1004 244 153 26 chr1 79078073 79078603 -118116829 - Charlie2b DNA MER1_type -32 2750 2154 9 1188 4851 117 92 51 chr1 79078812 79079682 -118115750 + RMER17A2 LTR ERVK 1 906 0 9 1188 207 0 0 0 chr1 79080449 79080472 -118114960 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1188 199 133 0 43 chr1 79081975 79082022 -118113410 + CT-rich Low_complexity Low_complexity 3 47 0 9 1188 450 0 0 0 chr1 79082028 79082078 -118113354 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1188 394 306 37 0 chr1 79082079 79082187 -118113245 - PB1D9 SINE Alu -7 113 2 1 1188 657 270 232 34 chr1 79082978 79083335 -118112097 + MLT2B4 LTR ERVL 3 430 -126 1 1188 524 268 23 23 chr1 79083808 79083984 -118111448 - Lx7 LINE L1 -1267 6429 6254 1 1188 312 239 0 90 chr1 79083987 79084003 -118111429 + MT2B LTR ERVL 152 160 -441 1 1188 454 147 0 0 chr1 79084003 79084071 -118111361 + PB1D9 SINE Alu 4 71 -49 1 1188 10744 46 21 1 chr1 79084099 79085411 -118110021 - L1Md_F3 LINE L1 0 6584 5235 1 1188 279 0 0 0 chr1 79085411 79085442 -118109990 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1188 261 0 0 0 chr1 79085442 79085470 -118109962 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1188 10744 49 9 2 chr1 79085470 79086239 -118109193 - L1Md_F3 LINE L1 -649 5234 4468 1 1188 300 193 93 35 chr1 79086239 79086325 -118109107 + B1_Mur3 SINE Alu 58 148 -1 1 1188 632 237 104 64 chr1 79086350 79086431 -118109001 - Lx7 LINE L1 -1446 6250 6167 1 1188 4021 157 32 12 chr1 79086431 79087109 -118108323 - RLTR17 LTR ERVK 0 692 1 1 1188 632 237 104 64 chr1 79087109 79087325 -118108107 - Lx7 LINE L1 -1530 6166 5941 1 1188 681 159 6 56 chr1 79087347 79087507 -118107925 - L1_Mur3 LINE L1 -2987 2893 2742 1 1188 1763 244 36 25 chr1 79088833 79089274 -118106158 + RMER19C LTR ERVK 166 611 0 1 1188 263 369 0 0 chr1 79089929 79090040 -118105392 - PB1D10 SINE Alu -6 111 1 1 1188 270 0 0 0 chr1 79090788 79090818 -118104614 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1188 7229 77 1 3 chr1 79091482 79092711 -118102721 + L1_Mus1 LINE L1 5341 6566 -1 1 1188 865 231 0 71 chr1 79093491 79093687 -118101745 - B3A SINE B2 -16 182 1 1 1188 366 375 71 12 chr1 79093722 79093892 -118101540 + MLT1A0 LTR MaLR 164 343 -22 1 1188 225 228 11 102 chr1 79094510 79094598 -118100834 - RMER1C Other Other -17 1325 1246 1 1188 259 321 108 10 chr1 79094521 79094716 -118100716 - Lx8 LINE L1 -6 7467 7254 1 1188 36117 16 2 7 chr1 79094988 79100556 -118094876 + L1Md_A LINE L1 53 5586 -297 1 1188 8553 24 1 0 chr1 79100557 79101550 -118093882 + L1Md_A LINE L1 5588 6581 -1 1 1188 439 238 82 28 chr1 79101729 79101896 -118093536 + MTD LTR MaLR 228 419 0 1 1188 915 98 0 0 chr1 79102125 79102257 -118093175 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1188 336 253 27 0 chr1 79102318 79102392 -118093040 + MTEb LTR MaLR 1 76 -283 1 1188 2164 156 59 3 chr1 79102392 79102784 -118092648 - BGLII_Mus LTR ERVK 0 422 9 1 1188 585 203 13 7 chr1 79102864 79103013 -118092419 - L1VL1 LINE L1 -6270 152 3 1 1188 3432 27 0 17 chr1 79103020 79103430 -118092002 + L1Md_F3 LINE L1 6168 6570 -14 1 1188 559 286 51 3 chr1 79103430 79103613 -118091819 + MTEb LTR MaLR 146 379 0 1 1188 186 314 118 0 chr1 79103670 79103772 -118091660 - L3 LINE CR1 -3591 898 785 1 1188 5283 65 32 11 chr1 79104675 79105388 -118090044 + L1Md_F2 LINE L1 5855 6582 0 1 1188 481 317 70 47 chr1 79106781 79107079 -118088353 - MER113 DNA MER1_type -90 431 127 1 1188 25 0 0 0 chr1 79107087 79107112 -118088320 + AT_rich Low_complexity Low_complexity 1 25 0 1 1188 735 247 21 53 chr1 79107139 79107156 -118088276 - B3A SINE B2 -16 182 166 1 1188 609 52 0 0 chr1 79107156 79107233 -118088199 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 1188 735 247 21 53 chr1 79107233 79107403 -118088029 - B3A SINE B2 -33 165 1 1 1188 247 263 39 13 chr1 79108178 79108255 -118087177 - MIR SINE MIR -21 241 163 1 1188 663 313 109 16 chr1 79108258 79108570 -118086862 - MLT1E2 LTR MaLR -3 624 284 1 1188 186 43 0 0 chr1 79108698 79108721 -118086711 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1188 1593 177 74 40 chr1 79108722 79109075 -118086357 - Lx4B LINE L1 0 7058 6694 1 1188 7688 177 49 17 chr1 79109074 79109960 -118085472 - L1_Mur2 LINE L1 -2908 2969 2072 1 1188 243 88 0 0 chr1 79109960 79109994 -118085438 + (TGG)n Simple_repeat Simple_repeat 1 34 0 1 1188 7688 209 37 19 chr1 79109994 79111222 -118084210 - L1_Mur2 LINE L1 -3806 2071 806 1 1188 253 337 42 26 chr1 79111624 79111816 -118083616 - Lx7 LINE L1 -361 7335 7141 1 1188 248 257 37 0 chr1 79111816 79111925 -118083507 - Lx6 LINE L1 -10 7450 7338 1 1188 333 0 0 0 chr1 79112146 79112183 -118083249 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1188 435 259 188 8 chr1 79112194 79112311 -118083121 - RSINE1 SINE B4 -19 146 9 1 1188 446 315 84 66 chr1 79112249 79112535 -118082897 - MLT1E2 LTR MaLR -327 300 10 1 1188 2106 180 39 31 chr1 79114180 79114570 -118080862 + MTC LTR MaLR 1 393 -28 1 1188 592 280 156 17 chr1 79115066 79115477 -118079955 - L1MB5 LINE L1 -165 6009 5542 1 1188 240 238 0 0 chr1 79116150 79116213 -118079219 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1188 410 234 42 49 chr1 79116330 79116477 -118078955 - B1F SINE Alu 0 147 1 1 1188 36866 36 3 0 chr1 79116788 79122187 -118073245 - L1Md_T LINE L1 0 6582 1170 1 1188 5130 161 24 31 chr1 79122193 79123301 -118072131 - L1Md_T LINE L1 -5411 1205 105 1 1188 240 339 78 16 chr1 79123326 79123569 -118071863 + Charlie2b DNA MER1_type 2298 2555 -227 1 1188 465 19 0 0 chr1 79123950 79124004 -118071428 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1188 795 182 14 0 chr1 79124011 79124154 -118071278 - B3A SINE B2 -43 155 11 1 1188 489 331 60 33 chr1 79124748 79124932 -118070500 + B4A SINE B4 102 290 -2 1 1188 21 57 0 0 chr1 79124965 79125000 -118070432 + AT_rich Low_complexity Low_complexity 1 35 0 1 1188 26 0 0 0 chr1 79127213 79127239 -118068193 + AT_rich Low_complexity Low_complexity 1 26 0 1 1188 295 247 35 12 chr1 79127460 79127546 -118067886 - LTR33 LTR ERVL -21 494 407 1 1188 548 217 53 15 chr1 79127554 79127685 -118067747 + B1_Mur2 SINE Alu 1 136 -13 1 1188 234 81 0 0 chr1 79127685 79127722 -118067710 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1 1188 696 107 0 0 chr1 79129375 79129478 -118065954 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 1188 258 356 20 14 chr1 79129647 79129795 -118065637 - Lx9 LINE L1 -218 7426 7278 1 1188 265 73 24 0 chr1 79129795 79129836 -118065596 + MTB-int LTR MaLR 1057 1098 0 1 1188 3132 63 5 2 chr1 79129836 79130235 -118065197 + MTB LTR MaLR 1 400 0 1 1188 29 0 0 0 chr1 79130384 79130413 -118065019 + AT_rich Low_complexity Low_complexity 1 29 0 1 1188 195 42 0 0 chr1 79130660 79130684 -118064748 + (CTA)n Simple_repeat Simple_repeat 3 26 0 1 1188 7395 37 0 1 chr1 79131257 79132144 -118063288 + L1Md_F2 LINE L1 5685 6570 -12 1 1188 777 215 83 17 chr1 79132160 79132340 -118063092 - B3 SINE B2 -22 194 3 1 1188 987 250 38 25 chr1 79132340 79132565 -118062867 - B4A SINE B4 -59 233 6 1 1188 814 269 28 19 chr1 79132607 79132819 -118062613 - B3 SINE B2 0 216 3 1 1188 1403 282 33 53 chr1 79133913 79134459 -118060973 - Lx9 LINE L1 -206 7438 6904 1 1188 27 73 0 0 chr1 79134727 79134782 -118060650 + AT_rich Low_complexity Low_complexity 1 55 0 1 1188 264 30 0 0 chr1 79135000 79135033 -118060399 + (CTA)n Simple_repeat Simple_repeat 2 34 0 1 1188 850 218 77 15 chr1 79135565 79135761 -118059671 - B3 SINE B2 -6 210 3 1 1188 960 262 34 25 chr1 79135761 79135987 -118059445 - B4A SINE B4 -59 233 6 1 1188 872 255 28 19 chr1 79136029 79136241 -118059191 - B3 SINE B2 0 216 3 1 1188 209 59 37 56 chr1 79137168 79137222 -118058210 + T-rich Low_complexity Low_complexity 2 54 0 1 1188 584 273 239 9 chr1 79137406 79137724 -118057708 - Lx8 LINE L1 -256 7217 6827 1 1188 218 192 77 0 chr1 79137981 79138033 -118057399 + MIRm SINE MIR 216 271 -5 1 1188 344 268 0 11 chr1 79138885 79138972 -118056460 - B1_Mur1 SINE Alu -26 123 38 1 1188 639 39 0 0 chr1 79139108 79139186 -118056246 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1188 294 355 108 53 chr1 79139257 79139627 -118055805 - MLT1I LTR MaLR -6 405 21 1 1188 219 329 130 56 chr1 79140274 79140435 -118054997 + MIR SINE MIR 12 184 -78 1 1188 863 152 98 17 chr1 79140457 79140631 -118054801 - B2_Mm2 SINE B2 -6 189 2 1 1188 1796 161 19 72 chr1 79140879 79141241 -118054191 + ORR1C2 LTR MaLR 42 384 0 1 1188 1174 266 81 25 chr1 79141688 79142047 -118053385 - MTE2b LTR MaLR 0 379 1 1 1188 397 361 82 19 chr1 79142348 79142605 -118052827 + MamGypLTR1a LTR Gypsy 97 369 -415 1 1188 1275 124 75 9 chr1 79143133 79143345 -118052087 - URR1A DNA MER1_type 0 226 1 1 1188 294 346 0 10 chr1 79143815 79143917 -118051515 + CT-rich Low_complexity Low_complexity 3 103 0 1 1188 351 290 207 24 chr1 79143931 79143997 -118051435 - L1M5 LINE L1 -3573 2573 2486 1 1188 266 67 0 22 chr1 79143997 79144043 -118051389 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 1 1188 351 290 207 24 chr1 79144043 79144305 -118051127 - L1M5 LINE L1 -3661 2485 2186 1 1188 25 51 0 0 chr1 79144494 79144533 -118050899 + AT_rich Low_complexity Low_complexity 1 39 0 1 1188 395 279 158 27 chr1 79144605 79144826 -118050606 + L3b LINE CR1 9 258 -224 1 1188 714 295 131 16 chr1 79145240 79145485 -118049947 + B4 SINE B4 2 274 -18 1 1188 279 0 0 0 chr1 79145494 79145525 -118049907 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1188 42 20 0 0 chr1 79145570 79145619 -118049813 + AT_rich Low_complexity Low_complexity 1 49 0 1 1188 435 368 27 6 chr1 79145892 79146117 -118049315 + MLT1H1 LTR MaLR 37 310 -285 1 1188 351 273 111 89 chr1 79146172 79146209 -118049223 + MER31A LTR ERV1 33 67 -418 1 1188 1700 56 0 0 chr1 79146209 79146425 -118049007 - L1Md_T LINE L1 0 6582 6367 1 1188 351 273 111 89 chr1 79146425 79146612 -118048820 + MER31A LTR ERV1 68 262 -223 1 1188 614 304 129 57 chr1 79146616 79146948 -118048484 - ORR1E LTR MaLR -3 356 1 1 1188 204 158 0 0 chr1 79147016 79147054 -118048378 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1188 408 314 54 77 chr1 79147142 79147439 -118047993 - RLTR15 LTR ERVK -37 322 33 1 1188 330 229 0 0 chr1 79147484 79147554 -118047878 - RLTR12A LTR ERVK -494 74 5 1 1188 225 365 10 0 chr1 79147662 79147758 -118047674 + MLT1H1 LTR MaLR 374 470 -19 1 1188 404 303 6 0 chr1 79148238 79148347 -118047085 - PB1D10 SINE Alu -7 113 2 1 1188 205 377 19 0 chr1 79148818 79148924 -118046508 - MIR SINE MIR -67 141 34 1 1188 281 318 0 0 chr1 79149268 79149356 -118046076 + Charlie5 DNA MER1_type 29 116 -2508 2 1188 3068 30 11 3 chr1 79149738 79150112 -118045320 + L1Md_F3 LINE L1 6206 6582 -2 2 1188 443 401 73 21 chr1 79150348 79150814 -118044618 - L1MEg LINE L1 -5574 510 21 2 1188 7489 89 28 1 chr1 79150816 79152423 -118043009 - L1_Mus3 LINE L1 -5 6633 4966 2 1188 2167 137 5 8 chr1 79152423 79152805 -118042627 + L1_Mus3 LINE L1 4562 4942 -941 2 1188 596 198 32 0 chr1 79152809 79152935 -118042497 - ORR1C2 LTR MaLR 0 384 255 2 1188 3981 134 68 3 chr1 79155358 79155995 -118039437 - RLTR33 LTR ERVK 0 678 1 2 1188 2169 97 55 0 chr1 79156244 79156554 -118038878 + ORR1A2 LTR MaLR 1 327 0 2 1188 693 237 293 30 chr1 79157128 79157432 -118038000 + MTD LTR MaLR 19 402 -17 2 1188 628 261 0 7 chr1 79157449 79157584 -118037848 + ID_B1 SINE B4 78 211 -13 2 1188 304 206 0 0 chr1 79158209 79158272 -118037160 - Lx7 LINE L1 -373 7323 7261 2 1188 7258 171 128 43 chr1 79158288 79160521 -118034911 - Lx7 LINE L1 -545 7151 4718 2 1188 293 0 0 26 chr1 79160521 79160559 -118034873 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2 1188 7258 141 139 51 chr1 79160559 79161215 -118034217 - Lx7 LINE L1 -1163 4717 3976 2 1188 4365 98 2 3 chr1 79161243 79161849 -118033583 - L1_Mus4 LINE L1 -1 6635 6031 2 1188 604 239 6 52 chr1 79161849 79162021 -118033411 - RNLTR23 LTR ERVK 0 642 479 2 1188 1086 89 0 6 chr1 79162310 79162468 -118032964 - L1_Mus4 LINE L1 -600 6036 5880 2 1188 4656 94 3 0 chr1 79162466 79163220 -118032212 + L1_Mus4 LINE L1 5152 5907 -729 2 1188 1932 166 54 56 chr1 79163217 79163720 -118031712 - Lx7 LINE L1 -1987 3893 3392 2 1188 346 256 13 0 chr1 79163800 79163878 -118031554 + ID4 SINE ID 3 81 -2 2 1188 996 25 0 0 chr1 79164000 79164119 -118031313 + (CAAAC)n Simple_repeat Simple_repeat 2 120 0 2 1188 204 383 0 0 chr1 79164384 79164444 -118030988 + L2b LINE L2 3279 3338 -37 2 1188 444 361 36 64 chr1 79165206 79165487 -118029945 - MLT1D LTR MaLR -109 396 124 2 1188 426 350 115 32 chr1 79165554 79165959 -118029473 + RMER5 LTR ERV1 47 486 -48 2 1188 540 0 0 0 chr1 79165959 79166019 -118029413 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 2 1188 426 350 115 32 chr1 79166019 79166047 -118029385 + RMER5 LTR ERV1 487 515 -19 2 1188 182 364 91 0 chr1 79166177 79166254 -118029178 + L3 LINE CR1 4327 4410 -79 2 1188 672 298 5 20 chr1 79166499 79166694 -118028738 + B3A SINE B2 1 192 -6 2 1188 770 323 63 8 chr1 79167035 79167288 -118028144 + MER47B DNA MER2_type 1 267 -151 2 1189 18833 150 15 4 chr1 79167995 79172484 -118022948 + L1_Mus4 LINE L1 395 4934 -949 2 1189 7467 98 13 2 chr1 79172531 79174367 -118021065 - L1_Mus3 LINE L1 -3 6635 4778 2 1189 7095 126 3 3 chr1 79174367 79176077 -118019355 + L1_Mus4 LINE L1 4924 6632 -4 2 1189 2877 290 74 29 chr1 79177269 79178461 -118016971 + Lx8 LINE L1 6197 7441 -32 2 1189 5701 20 0 0 chr1 79178473 79179166 -118016266 + L1Md_T LINE L1 4894 5586 -297 2 1189 8411 36 0 0 chr1 79179166 79180161 -118015271 + L1Md_T LINE L1 5587 6581 -1 2 1189 626 311 25 4 chr1 79180709 79180983 -118014449 + L1MB8 LINE L1 5552 5831 -347 2 1189 572 314 42 9 chr1 79181024 79181236 -118014196 - MLT1B LTR MaLR -8 382 164 2 1189 627 142 0 0 chr1 79181236 79181342 -118014090 + (TC)n Simple_repeat Simple_repeat 1 106 0 2 1189 1022 129 0 0 chr1 79181342 79181489 -118013943 - B1_Mm SINE Alu 0 147 1 2 1189 239 0 0 31 chr1 79181497 79181529 -118013903 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1189 600 111 0 0 chr1 79181740 79181830 -118013602 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1189 213 39 0 0 chr1 79181835 79181861 -118013571 + (TA)n Simple_repeat Simple_repeat 1 26 0 2 1189 265 209 151 43 chr1 79182951 79183136 -118012296 + L1ME4a LINE L1 5916 6120 -4 2 1189 1359 208 155 114 chr1 79183394 79183475 -118011957 - MT2A LTR ERVL -2 531 464 2 1189 450 0 0 0 chr1 79183475 79183525 -118011907 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1189 1359 208 155 114 chr1 79183525 79183953 -118011479 - MT2A LTR ERVL -70 463 1 2 1189 714 156 54 8 chr1 79185433 79185562 -118009870 + ORR1C2 LTR MaLR 25 159 -225 2 1189 555 16 0 0 chr1 79185565 79185629 -118009803 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1189 662 144 9 26 chr1 79185638 79185752 -118009680 + ORR1C2 LTR MaLR 270 381 -3 2 1189 1365 265 70 13 chr1 79185760 79186143 -118009289 + MTD LTR MaLR 1 405 -14 2 1189 237 341 12 35 chr1 79186405 79186490 -118008942 - MER5A DNA MER1_type -6 183 101 2 1189 327 287 86 22 chr1 79187560 79187699 -118007733 + MIR SINE MIR 14 161 -101 2 1189 23 0 0 0 chr1 79189081 79189104 -118006328 + AT_rich Low_complexity Low_complexity 1 23 0 2 1189 2285 79 3 36 chr1 79190342 79190671 -118004761 + L1_Mus2 LINE L1 6246 6563 -3 2 1189 27 0 0 0 chr1 79190681 79190708 -118004724 + AT_rich Low_complexity Low_complexity 1 27 0 2 1189 243 269 157 56 chr1 79191047 79191244 -118004188 - L1ME1 LINE L1 -55 6124 5908 2 1189 333 0 0 0 chr1 79191761 79191798 -118003634 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1189 715 200 7 0 chr1 79191798 79191933 -118003499 - B1_Mur4 SINE Alu -10 140 5 2 1189 23 86 0 0 chr1 79192428 79192486 -118002946 + AT_rich Low_complexity Low_complexity 1 58 0 2 1189 326 23 23 0 chr1 79192546 79192589 -118002843 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1189 531 327 185 19 chr1 79192589 79193089 -118002343 - L1M5 LINE L1 -2538 3608 3024 2 1189 228 67 0 0 chr1 79193089 79193119 -118002313 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1189 531 327 185 19 chr1 79193119 79193294 -118002138 - L1M5 LINE L1 -3123 3023 2822 2 1189 353 330 94 0 chr1 79193425 79193637 -118001795 - L1MC3 LINE L1 -1087 6698 6467 2 1189 264 367 34 0 chr1 79193808 79193955 -118001477 - Lx8 LINE L1 -167 7306 7155 2 1189 832 119 7 50 chr1 79193989 79194130 -118001302 + RMER19C LTR ERVK 1 135 -476 2 1189 3060 174 8 60 chr1 79194132 79194733 -118000699 + RMER19C LTR ERVK 42 611 0 2 1189 254 313 56 15 chr1 79194733 79194931 -118000501 - L1MC LINE L1 -3788 2358 2153 2 1189 21 36 0 0 chr1 79195028 79195056 -118000376 + AT_rich Low_complexity Low_complexity 1 28 0 2 1189 198 71 0 0 chr1 79195139 79195167 -118000265 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1189 1147 82 0 0 chr1 79195167 79195314 -118000118 - B1_Mus1 SINE Alu 0 148 2 2 1189 32 0 0 0 chr1 79195324 79195356 -118000076 + AT_rich Low_complexity Low_complexity 1 32 0 2 1189 251 286 14 0 chr1 79195373 79195443 -117999989 - Charlie7 DNA MER1_type -533 2079 2009 2 1189 774 105 0 0 chr1 79195454 79195568 -117999864 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1189 570 224 279 0 chr1 79195593 79195740 -117999692 - ID_B1 SINE B4 -34 190 3 2 1189 229 348 74 33 chr1 79195740 79195850 -117999582 - MLT1F2 LTR MaLR -429 131 17 2 1189 610 253 181 12 chr1 79195861 79196109 -117999323 - Charlie7 DNA MER1_type -754 1858 1569 2 1189 378 0 0 0 chr1 79196267 79196309 -117999123 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1189 726 225 7 7 chr1 79196311 79196450 -117998982 - B1_Mus1 SINE Alu -6 142 4 2 1189 360 0 0 0 chr1 79196596 79196636 -117998796 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1189 333 289 80 94 chr1 79197002 79197288 -117998144 - Charlie7 DNA MER1_type -1043 1569 1288 2 1189 244 316 25 66 chr1 79198027 79198149 -117997283 - MIR SINE MIR -105 157 41 2 1189 565 330 187 15 chr1 79198457 79198847 -117996585 + MLT1H-int LTR MaLR 765 1216 -171 2 1189 181 250 19 37 chr1 79199320 79199374 -117996058 - L4 LINE RTE -1340 689 637 2 1189 28 48 0 0 chr1 79199844 79199886 -117995546 + AT_rich Low_complexity Low_complexity 1 42 0 2 1189 715 187 13 7 chr1 79199918 79200076 -117995356 + ORR1C1 LTR MaLR 20 182 -192 2 1189 261 75 0 54 chr1 79200076 79200132 -117995300 + (TCCCC)n Simple_repeat Simple_repeat 1 53 0 2 1189 983 102 6 0 chr1 79200133 79200310 -117995122 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 2 1189 1153 60 42 0 chr1 79200580 79200746 -117994686 - L1Md_F2 LINE L1 0 6582 6410 2 1189 825 291 80 68 chr1 79200748 79200911 -117994521 + ORR1E LTR MaLR 7 174 -185 2 1189 450 0 0 0 chr1 79200911 79200961 -117994471 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1189 825 291 80 68 chr1 79200961 79201136 -117994296 + ORR1E LTR MaLR 175 348 -11 2 1189 936 230 120 45 chr1 79201150 79201466 -117993966 + ORR1E-int LTR MaLR 2 315 -1055 2 1189 308 307 99 29 chr1 79201725 79201896 -117993536 - L1MC4 LINE L1 -4206 2009 1827 2 1189 208 316 101 55 chr1 79202075 79202403 -117993029 - L2 LINE L2 -2269 1150 808 2 1189 241 350 65 0 chr1 79202592 79202715 -117992717 - MLT1A0 LTR MaLR 0 365 235 2 1189 666 279 16 65 chr1 79204165 79204191 -117991241 - B3A SINE B2 -14 184 160 2 1189 411 21 0 0 chr1 79204191 79204239 -117991193 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1189 693 92 0 0 chr1 79204239 79204336 -117991096 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 1189 666 279 16 65 chr1 79204336 79204492 -117990940 - B3A SINE B2 -39 159 11 2 1189 22 0 0 0 chr1 79204552 79204574 -117990858 + AT_rich Low_complexity Low_complexity 1 22 0 2 1189 293 87 0 0 chr1 79204708 79204754 -117990678 - MT2B LTR ERVL -3 530 485 2 1189 24 53 0 0 chr1 79204780 79204818 -117990614 + AT_rich Low_complexity Low_complexity 1 38 0 2 1189 226 125 42 0 chr1 79204825 79204873 -117990559 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1189 1022 273 34 55 chr1 79204888 79205341 -117990091 - MT2B LTR ERVL -47 554 35 2 1189 557 237 14 14 chr1 79205352 79205493 -117989939 - Lx8 LINE L1 -145 7328 7188 2 1189 198 0 0 0 chr1 79205645 79205667 -117989765 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1189 383 309 0 0 chr1 79205848 79205942 -117989490 + B1_Mur1 SINE Alu 48 141 -8 2 1189 585 58 12 0 chr1 79205942 79206028 -117989404 + L1_Mus2 LINE L1 6479 6565 -1 2 1189 436 294 54 84 chr1 79206472 79206505 -117988927 - B4A SINE B4 0 292 264 2 1189 362 57 19 0 chr1 79206505 79206558 -117988874 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1189 436 294 54 84 chr1 79206558 79206821 -117988611 - B4A SINE B4 -29 263 5 2 1189 35 41 0 0 chr1 79206892 79206941 -117988491 + AT_rich Low_complexity Low_complexity 1 49 0 2 1189 6008 77 21 14 chr1 79206945 79207802 -117987630 - L1Md_F2 LINE L1 -12 6570 5708 2 1189 5462 61 18 1 chr1 79207783 79208011 -117987421 + L1_Mm LINE L1 5007 5234 -649 2 1189 216 0 0 0 chr1 79208011 79208035 -117987397 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1189 5462 61 18 1 chr1 79208035 79208545 -117986887 + L1_Mm LINE L1 5235 5755 -128 2 1189 1077 51 0 0 chr1 79208624 79208761 -117986671 - L1_Mus2 LINE L1 0 6566 6430 2 1189 5149 40 3 0 chr1 79210283 79210903 -117984529 + L1Md_F2 LINE L1 5948 6569 -13 2 1189 1979 150 124 11 chr1 79211606 79211984 -117983448 + MTC LTR MaLR 1 421 0 3 1189 358 212 11 66 chr1 79212651 79212742 -117982690 - Lx8 LINE L1 -332 7141 7056 3 1189 1900 208 69 3 chr1 79213118 79213508 -117981924 - MTC LTR MaLR -5 416 1 3 1189 183 286 41 0 chr1 79213655 79213704 -117981728 + MIRm SINE MIR 121 171 -105 3 1189 2953 210 44 37 chr1 79213704 79214621 -117980811 + RMER1A Other Other 72 869 -161 3 1189 197 33 0 32 chr1 79214621 79214652 -117980780 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1189 270 0 0 0 chr1 79214652 79214682 -117980750 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1189 2579 232 78 24 chr1 79214682 79214798 -117980634 + RMER1B Other Other 938 1065 -1 3 1189 1515 171 50 0 chr1 79214798 79215078 -117980354 + RLTR14 LTR ERV1 48 341 -41 3 1189 510 264 38 23 chr1 79215205 79215337 -117980095 + B3A SINE B2 7 140 -58 3 1189 333 0 0 0 chr1 79215337 79215374 -117980058 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1189 198 0 0 0 chr1 79215374 79215396 -117980036 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1189 2230 150 32 0 chr1 79216084 79216265 -117979167 - L1_Mm LINE L1 -957 4926 4733 3 1189 717 97 0 0 chr1 79216265 79216368 -117979064 + (TTTTG)n Simple_repeat Simple_repeat 2 104 0 3 1189 2230 150 32 0 chr1 79216368 79216593 -117978839 - L1_Mm LINE L1 -1151 4732 4508 3 1189 3853 95 19 14 chr1 79216593 79217171 -117978261 + L1_Mus4 LINE L1 6056 6636 0 3 1189 182 364 0 48 chr1 79217423 79217527 -117977905 + MIR3 SINE MIR 61 159 -49 3 1189 324 0 0 0 chr1 79218025 79218061 -117977371 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1189 255 273 30 0 chr1 79218094 79218160 -117977272 - B4 SINE B4 -39 253 186 3 1189 332 22 0 22 chr1 79219265 79219311 -117976121 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 3 1189 455 309 188 18 chr1 79219599 79219876 -117975556 + RMER15 LTR ERVL 250 573 -2 3 1189 1199 289 103 31 chr1 79221247 79221730 -117973702 - RMER5 LTR ERV1 0 534 17 3 1189 572 91 11 0 chr1 79221735 79221823 -117973609 + (TCCC)n Simple_repeat Simple_repeat 3 91 0 3 1189 534 16 0 0 chr1 79222138 79222201 -117973231 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1189 435 163 51 0 chr1 79223388 79223486 -117971946 + Lx9 LINE L1 6976 7078 -566 3 1189 270 0 0 0 chr1 79223505 79223535 -117971897 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1189 443 171 45 0 chr1 79223537 79223648 -117971784 + Lx9 LINE L1 7528 7643 -1 3 1189 255 200 56 28 chr1 79226202 79226274 -117969158 - L1M5 LINE L1 -355 5809 5736 3 1189 319 341 59 27 chr1 79226381 79226568 -117968864 + RLTR11A2 LTR ERVK 116 308 -219 3 1189 233 297 42 0 chr1 79227660 79227778 -117967654 - L1MEf LINE L1 -1368 4953 4831 3 1189 229 310 30 0 chr1 79228192 79228292 -117967140 - L1MEf LINE L1 -3037 3284 3182 3 1189 276 247 13 13 chr1 79228406 79228484 -117966948 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1189 400 295 79 79 chr1 79228488 79228779 -117966653 - B4 SINE B4 0 292 2 3 1189 1023 354 58 61 chr1 79229132 79230679 -117964753 - L1MEf LINE L1 -4169 2339 789 3 1189 2218 188 100 22 chr1 79231052 79231542 -117963890 - RLTR11A LTR ERVK 0 528 1 3 1189 267 133 0 0 chr1 79231645 79231690 -117963742 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1189 409 288 54 9 chr1 79232246 79232358 -117963074 - RSINE1 SINE B4 -6 159 43 3 1189 292 235 10 20 chr1 79232668 79232768 -117962664 + CT-rich Low_complexity Low_complexity 2 100 0 3 1189 7371 126 23 21 chr1 79232801 79234157 -117961275 - L1_Mur2 LINE L1 -1736 4141 2784 3 1189 371 282 182 0 chr1 79234157 79234267 -117961165 - B3A SINE B2 -67 131 2 3 1189 22 0 0 0 chr1 79234600 79234622 -117960810 + AT_rich Low_complexity Low_complexity 1 22 0 3 1189 278 223 156 55 chr1 79234934 79234978 -117960454 + PB1D7 SINE Alu 1 57 -63 3 1189 213 39 0 0 chr1 79234978 79235004 -117960428 + (GAA)n Simple_repeat Simple_repeat 3 28 0 3 1189 278 223 156 55 chr1 79235004 79235068 -117960364 + PB1D7 SINE Alu 58 120 0 3 1189 180 120 39 20 chr1 79235070 79235121 -117960311 + A-rich Low_complexity Low_complexity 2 53 0 3 1189 1575 238 48 32 chr1 79235654 79236027 -117959405 + MTD LTR MaLR 18 396 -23 3 1189 2224 159 56 2 chr1 79236027 79236102 -117959330 - MTC LTR MaLR 0 421 340 3 1189 237 33 0 0 chr1 79236102 79236132 -117959300 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 1189 2224 159 56 2 chr1 79236132 79236452 -117958980 - MTC LTR MaLR -82 339 6 3 1189 364 266 122 161 chr1 79236452 79236485 -117958947 + MTD LTR MaLR 357 379 0 3 1189 430 297 33 17 chr1 79238269 79238389 -117957043 + MLT2B3 LTR ERVL 1 122 -432 3 1189 352 348 5 92 chr1 79238389 79238465 -117956967 + MTEa LTR MaLR 1 179 -200 3 1189 2159 176 22 17 chr1 79238541 79238958 -117956474 + MTC LTR MaLR 1 419 -2 3 1189 793 324 58 75 chr1 79239515 79240446 -117954986 - L1MD2 LINE L1 -72 6287 5373 3 1189 284 48 24 0 chr1 79240504 79240546 -117954886 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1189 255 298 160 0 chr1 79240546 79240640 -117954792 - PB1D7 SINE Alu -11 109 1 3 1189 382 341 94 29 chr1 79240668 79240943 -117954489 - L1MD2 LINE L1 -1172 4974 4682 3 1189 2032 43 0 0 chr1 79240945 79241198 -117954234 - L1Md_F2 LINE L1 -123 6459 6207 3 1189 854 73 24 0 chr1 79241198 79241322 -117954110 + L1Md_F2 LINE L1 6444 6570 -12 3 1189 476 370 103 27 chr1 79241343 79241865 -117953567 - L1MD2 LINE L1 -1439 4707 4146 3 1189 231 257 56 14 chr1 79243736 79243807 -117951625 + MER57E2 LTR ERV1 3 76 -326 3 1189 213 250 0 15 chr1 79244006 79244071 -117951361 + T-rich Low_complexity Low_complexity 4 67 0 3 1189 1778 182 105 8 chr1 79244292 79244674 -117950758 - MTD LTR MaLR 0 419 1 3 1189 8135 22 0 0 chr1 79244683 79246205 -117949227 - L1Md_T LINE L1 0 6582 5061 3 1189 10731 8 0 0 chr1 79246202 79247476 -117947956 + L1Md_T LINE L1 3794 5067 -816 3 1189 15580 21 1 2 chr1 79247474 79249403 -117946029 + L1_Mm LINE L1 2950 4876 -1007 3 1189 180 0 0 0 chr1 79249403 79249423 -117946009 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1189 521 192 21 30 chr1 79249423 79249604 -117945828 - RLTR6_Mm LTR ERV1 -126 502 223 3 1189 741 148 5 158 chr1 79249617 79249801 -117945631 - RLTR6_Mm LTR ERV1 -498 156 1 3 1189 7234 38 1 24 chr1 79249802 79251637 -117943795 - L1Md_A LINE L1 -3669 2214 422 3 1189 5884 12 0 56 chr1 79251624 79251750 -117943682 + L1Md_A LINE L1 4851 4972 -911 3 1189 6485 6 0 0 chr1 79251750 79252464 -117942968 + L1Md_T LINE L1 5869 6582 0 3 1189 5884 12 0 56 chr1 79252464 79253117 -117942315 + L1Md_A LINE L1 4973 5586 -297 3 1189 8906 9 1 0 chr1 79253117 79254112 -117941320 + L1Md_A LINE L1 5587 6582 0 3 1189 787 10 20 0 chr1 79254118 79254219 -117941213 - L1_Mm LINE L1 -2919 2964 2862 3 1189 740 312 73 7 chr1 79254233 79254520 -117940912 - Lx8 LINE L1 -128 7345 7040 3 1189 1796 304 83 12 chr1 79254555 79255281 -117940151 - Lx8 LINE L1 -496 6977 6201 3 1189 474 65 0 0 chr1 79255292 79255354 -117940078 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1189 374 330 98 40 chr1 79255390 79255687 -117939745 + L2 LINE L2 2701 3014 -405 3 1189 423 0 0 0 chr1 79256098 79256145 -117939287 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1189 21 0 0 0 chr1 79256875 79256896 -117938536 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 423 106 0 0 chr1 79257018 79257084 -117938348 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1189 1138 273 40 0 chr1 79257090 79257390 -117938042 - Lx8 LINE L1 -360 7113 6802 3 1189 274 371 16 31 chr1 79259901 79260029 -117935403 - MIRb SINE MIR -46 222 97 3 1189 195 42 0 0 chr1 79261160 79261184 -117934248 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1189 871 57 16 0 chr1 79262248 79262370 -117933062 + (TC)n Simple_repeat Simple_repeat 1 124 0 3 1189 4657 219 154 125 chr1 79262378 79264412 -117931020 - Lx7 LINE L1 -16 7680 5587 3 1189 22 0 0 0 chr1 79265522 79265544 -117929888 + AT_rich Low_complexity Low_complexity 1 22 0 3 1189 303 313 56 73 chr1 79265990 79266169 -117929263 - MIR SINE MIR -21 241 66 3 1189 635 273 133 71 chr1 79266412 79266751 -117928681 + MLT1B LTR MaLR 30 389 -1 3 1189 1099 50 0 0 chr1 79267038 79267177 -117928255 + B1_Mm SINE Alu 9 147 0 3 1189 796 282 65 93 chr1 79267748 79268361 -117927071 - L1_Mur3 LINE L1 -1251 4629 4034 3 1189 733 276 10 0 chr1 79268400 79268596 -117926836 - MTD LTR MaLR -219 200 3 3 1189 1653 169 86 40 chr1 79268603 79268954 -117926478 - ORR1C2 LTR MaLR -17 367 1 3 1189 1251 170 37 33 chr1 79268967 79269109 -117926323 - ORR1C2-int LTR MaLR -9 1361 1217 3 1189 1244 31 6 0 chr1 79269109 79269268 -117926164 - L1Md_F2 LINE L1 0 6582 6423 3 1189 1251 170 37 33 chr1 79269268 79269368 -117926064 - ORR1C2-int LTR MaLR -154 1216 1118 3 1189 3778 257 62 8 chr1 79269366 79270326 -117925106 - ORR1C2-int LTR MaLR -357 1013 3 3 1189 1176 199 120 45 chr1 79270326 79270683 -117924749 - ORR1C2 LTR MaLR 0 384 1 3 1189 482 272 37 0 chr1 79270683 79270794 -117924638 + ORR1D2 LTR MaLR 256 369 -1 3 1189 1176 296 70 7 chr1 79270794 79271376 -117924056 - L1_Mur3 LINE L1 -3124 2756 2138 3 1189 245 212 30 0 chr1 79272490 79272556 -117922876 - L1MA6 LINE L1 -27 6273 6206 3 1189 324 0 0 0 chr1 79272557 79272593 -117922839 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1189 37036 20 8 14 chr1 79272634 79274250 -117921182 - L1Md_T LINE L1 -34 6548 4927 3 1189 246 167 46 77 chr1 79274250 79274315 -117921117 + RMER20A LTR ERVK 186 248 -268 3 1189 37036 20 8 14 chr1 79274315 79278762 -117916670 - L1Md_T LINE L1 -34 4926 462 3 1189 1519 195 9 17 chr1 79279534 79280021 -117915411 + L1_Mur3 LINE L1 1018 1496 -4381 3 1189 3844 173 121 10 chr1 79280011 79280921 -117914511 + L1_Mur3 LINE L1 3185 4195 -1685 3 1189 463 106 105 12 chr1 79280947 79281033 -117914399 + B2_Mm2 SINE B2 95 188 -7 3 1189 1001 56 0 53 chr1 79281034 79281223 -117914209 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 1189 2843 126 23 2 chr1 79281843 79282281 -117913151 + L1_Mus3 LINE L1 6191 6637 -1 3 1189 288 399 49 25 chr1 79282375 79282578 -117912854 + MLT1I LTR MaLR 22 229 -182 3 1189 957 270 133 97 chr1 79282678 79283174 -117912258 + MT2A LTR ERVL 1 514 -19 3 1189 843 239 21 5 chr1 79283190 79283383 -117912049 + URR1B DNA MER1_type 30 225 0 3 1189 984 282 40 17 chr1 79284417 79284767 -117910665 - Lx6 LINE L1 0 7460 7103 3 1189 578 71 12 0 chr1 79285639 79285723 -117909709 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1189 594 316 31 63 chr1 79285744 79285967 -117909465 - B4A SINE B4 -75 217 2 3 1189 1005 107 59 48 chr1 79286216 79286403 -117909029 - Lx LINE L1 -3 6651 6463 3 1189 580 246 16 49 chr1 79286803 79286987 -117908445 + B3A SINE B2 3 180 -18 3 1189 263 316 178 13 chr1 79288662 79288819 -117906613 - MLT1E1A LTR MaLR 0 680 498 3 1189 1208 279 3 17 chr1 79288917 79289267 -117906165 + Lx6 LINE L1 7086 7430 -30 3 1189 468 0 0 0 chr1 79289288 79289340 -117906092 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 3 1189 5550 175 48 8 chr1 79289478 79289638 -117905794 - L1_Mur3 LINE L1 -3394 2486 2330 3 1189 4206 59 2 34 chr1 79289638 79290198 -117905234 - L1_Mus2 LINE L1 -1 6565 6024 4 1189 5550 175 48 8 chr1 79290198 79291272 -117904160 - L1_Mur3 LINE L1 -3551 2329 1203 3 1189 12068 168 49 25 chr1 79291275 79294054 -117901378 + L1_Mur3 LINE L1 2492 5334 -546 3 1189 878 137 184 0 chr1 79295423 79295613 -117899819 + URR1B DNA MER1_type 1 225 0 4 1189 340 330 184 42 chr1 79295645 79295955 -117899477 + MLT1H LTR MaLR 18 371 -178 4 1189 515 319 50 118 chr1 79296065 79296548 -117898884 - LTR81B LTR ERV1? -938 455 6 4 1189 863 209 62 31 chr1 79297092 79297349 -117898083 - Lx7 LINE L1 -1447 6249 5985 4 1189 247 346 92 46 chr1 79297359 79297468 -117897964 + B3A SINE B2 72 185 -13 4 1189 230 146 0 0 chr1 79297556 79297597 -117897835 - L1MD LINE L1 -526 5833 5793 4 1189 280 296 66 2 chr1 79298285 79298392 -117897040 + PB1D10 SINE Alu 8 125 -2 4 1189 242 333 13 0 chr1 79298401 79298479 -117896953 + ID4_ SINE ID 2 80 -3 4 148 441 301 119 44 chr1 79298558 79298971 -117896461 - L1MEf LINE L1 -1565 4581 4138 4 1190 612 210 8 61 chr1 79298974 79299106 -117896326 + B3 SINE B2 2 126 -90 4 1190 414 0 0 0 chr1 79299473 79299519 -117895913 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1190 767 250 0 43 chr1 79299522 79299642 -117895790 - B3A SINE B2 -42 156 43 4 1190 2651 68 59 0 chr1 79299642 79299981 -117895451 + RLTR10D LTR ERVK 1 359 0 4 1190 767 250 0 43 chr1 79299981 79300023 -117895409 - B3A SINE B2 -156 42 1 4 1190 279 0 0 0 chr1 79300401 79300432 -117895000 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1190 350 376 51 8 chr1 79300447 79300683 -117894749 - L1MEc LINE L1 -6047 353 108 4 1190 944 297 108 25 chr1 79300779 79301132 -117894300 - MER54A LTR ERVL -516 385 4 4 1190 259 298 74 25 chr1 79301287 79301531 -117893901 - L1MEf LINE L1 -4216 2026 1771 4 1190 725 263 0 43 chr1 79301546 79301601 -117893831 - B3A SINE B2 0 198 151 4 1190 545 27 27 0 chr1 79301601 79301675 -117893757 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 4 1190 725 263 0 43 chr1 79301675 79301826 -117893606 - B3A SINE B2 -48 150 1 4 1190 633 339 93 55 chr1 79302229 79302897 -117892535 - L1MEf LINE L1 -4958 1284 592 4 1190 1248 175 78 0 chr1 79304119 79304376 -117891056 - Lx9 LINE L1 -453 7191 6915 4 1190 827 314 56 56 chr1 79304493 79304831 -117890601 + MLT1E3 LTR MaLR 287 624 0 4 1190 305 316 160 21 chr1 79304851 79305045 -117890387 + FordPrefect DNA Tip100 1392 1612 -71 4 1190 241 187 40 13 chr1 79306389 79306465 -117888967 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 4 1190 563 108 10 0 chr1 79306466 79306568 -117888864 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1190 285 100 0 0 chr1 79306568 79306618 -117888814 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1190 432 62 0 0 chr1 79306732 79306796 -117888636 - L1_Mus2 LINE L1 0 6566 6503 4 1190 396 0 0 0 chr1 79308500 79308544 -117886888 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1190 265 329 0 0 chr1 79308547 79308623 -117886809 + MIRb SINE MIR 154 229 -39 4 1190 957 254 0 5 chr1 79309598 79309800 -117885632 + B3 SINE B2 3 203 -13 4 1190 356 339 26 9 chr1 79310093 79310209 -117885223 + PB1 SINE Alu 1 118 -9 4 1190 422 18 18 0 chr1 79310209 79310264 -117885168 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 4 1190 24 32 0 0 chr1 79310672 79310703 -117884729 + AT_rich Low_complexity Low_complexity 1 31 0 4 1190 423 0 0 0 chr1 79311726 79311773 -117883659 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1190 261 255 0 105 chr1 79311928 79312033 -117883399 - MT2B2 LTR ERVL -295 289 196 4 1190 495 272 0 0 chr1 79311946 79312060 -117883372 - B1F SINE Alu -24 125 12 4 1190 1990 133 130 0 chr1 79312060 79312407 -117883025 - ORR1B1 LTR MaLR 0 394 3 4 1190 204 158 0 0 chr1 79312422 79312460 -117882972 + CT-rich Low_complexity Low_complexity 3 40 0 4 1190 210 281 31 0 chr1 79312781 79312845 -117882587 + B1_Mur3 SINE Alu 5 70 -79 4 1190 2540 96 93 5 chr1 79313046 79313235 -117882197 + BGLII_Mus LTR ERVK 1 191 -231 4 1190 408 20 0 0 chr1 79313235 79313284 -117882148 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1190 2540 96 93 5 chr1 79313284 79313480 -117881952 + BGLII_Mus LTR ERVK 192 420 -2 4 1190 223 182 55 0 chr1 79313560 79313615 -117881817 + T-rich Low_complexity Low_complexity 5 62 0 4 1190 274 232 0 6 chr1 79313616 79313673 -117881759 - PB1D7 SINE Alu 0 127 65 4 1190 28 29 0 0 chr1 79313674 79313709 -117881723 + AT_rich Low_complexity Low_complexity 1 35 0 4 1190 351 0 0 0 chr1 79315791 79315830 -117879602 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1190 207 0 0 0 chr1 79316340 79316363 -117879069 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1190 250 331 65 6 chr1 79316536 79316706 -117878726 + L1M5 LINE L1 5660 5839 -285 4 1190 534 16 0 0 chr1 79317087 79317150 -117878282 + (TTGG)n Simple_repeat Simple_repeat 1 63 0 4 1190 305 331 101 0 chr1 79317165 79317304 -117878128 + MLT1A0 LTR MaLR 26 178 -187 4 1190 227 203 56 111 chr1 79317684 79317756 -117877676 + MLT1A0 LTR MaLR 288 355 -19 4 1190 255 337 78 17 chr1 79317792 79317907 -117877525 + MLT1A0 LTR MaLR 291 448 -19 4 1190 240 337 21 21 chr1 79317949 79318043 -117877389 - LTR16A1 LTR ERVL -341 115 22 4 1190 21 0 0 0 chr1 79318733 79318754 -117876678 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 189 94 0 0 chr1 79319107 79319139 -117876293 + (G)n Simple_repeat Simple_repeat 1 32 0 4 1190 436 292 117 84 chr1 79319159 79319398 -117876034 + MLT1J2 LTR MaLR 39 285 -159 4 1190 29981 77 19 4 chr1 79319398 79319896 -117875536 - L1_Mus1 LINE L1 -280 6287 5779 4 1190 5744 32 3 0 chr1 79319896 79320573 -117874859 - L1Md_F2 LINE L1 -1 6581 5903 4 1190 29981 101 10 3 chr1 79320573 79325246 -117870186 - L1_Mus1 LINE L1 -105 5778 1069 4 1190 2269 176 5 110 chr1 79325240 79325897 -117869535 - L1Md_F LINE L1 -5339 1221 628 4 1190 398 260 16 8 chr1 79325905 79326033 -117869399 - L1Md_F LINE L1 -5813 706 578 4 1190 456 272 19 37 chr1 79326091 79326336 -117869096 - L1VL1 LINE L1 -6029 393 45 4 1190 2083 193 99 36 chr1 79326552 79327047 -117868385 - RLTR11A LTR ERVK -2 526 1 4 1190 203 291 103 18 chr1 79328498 79328596 -117866836 + MIRm SINE MIR 92 192 -70 4 1190 345 295 37 37 chr1 79328705 79328814 -117866618 + PB1D10 SINE Alu 4 112 -5 4 1190 270 0 0 0 chr1 79328816 79328846 -117866586 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1190 356 370 103 21 chr1 79329218 79329619 -117865813 - MLT1H LTR MaLR -2 547 1 4 1190 229 275 9 149 chr1 79330294 79330401 -117865031 - B3 SINE B2 -12 204 113 4 1190 511 336 52 45 chr1 79330347 79330637 -117864795 - B4A SINE B4 0 292 1 4 1190 42 48 0 0 chr1 79330959 79331022 -117864410 + AT_rich Low_complexity Low_complexity 1 63 0 4 1190 1056 207 26 45 chr1 79334154 79334180 -117861252 - MTE-int LTR MaLR -28 1552 1528 4 1190 1403 197 137 23 chr1 79334180 79334363 -117861069 - ORR1C2 LTR MaLR -2 382 191 4 1190 498 17 0 0 chr1 79334363 79334422 -117861010 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1190 1403 197 137 23 chr1 79334422 79334581 -117860851 - ORR1C2 LTR MaLR -194 190 2 4 1190 1412 159 197 3 chr1 79334581 79334871 -117860561 - ORR1C2-int LTR MaLR 0 1509 1164 4 1190 2157 96 6 60 chr1 79334874 79335205 -117860227 - ORR1A3 LTR MaLR -13 313 1 4 1190 2227 277 63 28 chr1 79335205 79335884 -117859548 - ORR1C2-int LTR MaLR -333 1037 335 4 1190 843 155 78 48 chr1 79335884 79336031 -117859401 - L1_Mur3 LINE L1 -997 4883 4730 4 1190 321 26 0 0 chr1 79336031 79336069 -117859363 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1190 843 155 78 48 chr1 79336069 79336151 -117859281 - L1_Mur3 LINE L1 -1151 4729 4648 4 1190 3142 166 181 14 chr1 79336156 79336839 -117858593 + Lx6 LINE L1 4893 5710 -170 4 1190 3538 15 2 0 chr1 79336839 79337234 -117858198 - MTA_Mm LTR MaLR 0 396 1 4 1190 9199 34 2 1 chr1 79337234 79338331 -117857101 - MTA_Mm-int LTR MaLR 0 1098 1 4 1190 3500 20 2 0 chr1 79338331 79338726 -117856706 - MTA_Mm LTR MaLR 0 396 1 4 1190 3142 166 181 14 chr1 79338726 79338814 -117856618 + Lx6 LINE L1 5711 5793 -87 4 1190 301 219 27 54 chr1 79338813 79338924 -117856508 + Lx4A LINE L1 6949 7056 -2 4 1190 22 0 0 0 chr1 79338924 79338946 -117856486 + AT_rich Low_complexity Low_complexity 1 22 0 4 1190 1163 246 78 8 chr1 79338946 79339307 -117856125 + Lx6 LINE L1 5777 6162 -1298 4 1190 1049 112 0 0 chr1 79339325 79339494 -117855938 - Lx3_Mus LINE L1 -489 5397 5229 4 1190 6219 79 41 5 chr1 79339493 79340569 -117854863 + Lx3_Mus LINE L1 5405 6524 -485 4 1190 3964 102 3 0 chr1 79341023 79341594 -117853838 + Lx LINE L1 6060 6632 -22 4 1190 1401 190 34 50 chr1 79341650 79341971 -117853461 - ORR1C2-int LTR MaLR -1193 316 1 4 1190 1449 198 115 3 chr1 79342081 79342446 -117852986 - RCHARR1 DNA MER1_type -136 838 433 4 1190 551 227 13 84 chr1 79342460 79342614 -117852818 + MT2B LTR ERVL 1 143 -458 4 1190 350 214 60 0 chr1 79342614 79342698 -117852734 + MT2B LTR ERVL 271 359 -242 4 1190 876 282 161 3 chr1 79342700 79343049 -117852383 - RCHARR1 DNA MER1_type -520 454 51 4 1190 814 204 93 42 chr1 79343617 79343832 -117851600 + URR1A DNA MER1_type 1 226 0 4 1190 374 227 0 0 chr1 79343843 79343918 -117851514 + ID4 SINE ID 4 78 -5 4 1190 26 30 0 0 chr1 79344867 79344900 -117850532 + AT_rich Low_complexity Low_complexity 1 33 0 4 1190 290 200 30 30 chr1 79345559 79345835 -117849597 + (TG)n Simple_repeat Simple_repeat 1 276 0 4 1190 884 232 44 49 chr1 79345835 79346039 -117849393 - B3A SINE B2 -13 203 1 4 1190 220 121 59 29 chr1 79346944 79347012 -117848420 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 4 1190 2291 229 30 16 chr1 79347335 79347831 -117847601 - Lx5 LINE L1 -75 6975 6473 4 1190 483 280 40 6 chr1 79348556 79348732 -117846700 + Charlie22a DNA MER1_type 303 484 -7 4 1190 245 325 25 0 chr1 79348748 79348828 -117846604 + Tigger16b DNA Tigger 236 317 -20 4 1190 1704 168 3 44 chr1 79349801 79350143 -117845289 + RMER1B Other Other 730 1057 -9 4 1190 387 0 0 0 chr1 79351090 79351133 -117844299 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1190 308 286 0 0 chr1 79351486 79351563 -117843869 + Lx8 LINE L1 6628 6704 -769 4 1190 1493 262 73 47 chr1 79351573 79351932 -117843500 + Lx8 LINE L1 6963 7324 -149 4 1190 3025 56 24 3 chr1 79351932 79352309 -117843123 - IAPEY_LTR LTR ERVK 0 385 1 4 1190 1493 262 73 47 chr1 79352309 79352442 -117842990 + Lx8 LINE L1 7325 7468 -5 4 1190 628 51 0 0 chr1 79353354 79353433 -117841999 + B2_Mm2 SINE B2 2 80 -115 4 1190 22 35 0 0 chr1 79353447 79353476 -117841956 + AT_rich Low_complexity Low_complexity 1 29 0 4 1190 7987 28 0 0 chr1 79355174 79356616 -117838816 - L1Md_T LINE L1 -1 6581 5140 4 1190 323 98 0 16 chr1 79356670 79356732 -117838700 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1190 1080 75 0 0 chr1 79356732 79356878 -117838554 - B2_Mm2 SINE B2 -49 146 1 4 1190 536 294 32 11 chr1 79356913 79357099 -117838333 - B3A SINE B2 -6 192 3 4 1190 4598 58 3 8 chr1 79357662 79358249 -117837183 + L1Md_F2 LINE L1 5987 6570 -12 4 1190 1102 249 34 10 chr1 79358276 79358572 -117836860 - Lx7 LINE L1 -1798 5898 5596 4 1190 21 0 0 0 chr1 79358600 79358621 -117836811 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 650 73 21 0 chr1 79358637 79358733 -117836699 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 5 1190 207 182 0 0 chr1 79358807 79358840 -117836592 + polypurine Low_complexity Low_complexity 1 33 0 5 1190 1672 42 0 0 chr1 79359663 79359876 -117835556 - L1Md_F2 LINE L1 -414 6168 5956 5 1190 428 194 20 10 chr1 79359933 79360032 -117835400 + RLTR10A LTR ERVK 147 246 -165 5 1190 313 146 18 0 chr1 79360073 79360128 -117835304 + RLTR10A LTR ERVK 356 411 0 5 1190 2516 54 3 3 chr1 79360128 79360461 -117834971 - L1Md_F2 LINE L1 -621 5961 5629 5 1190 2943 78 2 15 chr1 79360466 79360871 -117834561 + L1Md_F2 LINE L1 6170 6569 -13 5 1190 503 289 32 16 chr1 79361028 79361049 -117834383 - RSINE1 SINE B4 -4 161 142 5 1190 393 39 0 0 chr1 79361049 79361100 -117834332 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1190 503 289 32 16 chr1 79361100 79361201 -117834231 - RSINE1 SINE B4 -24 141 37 5 1190 355 171 75 52 chr1 79361456 79361629 -117833803 - RMER17D LTR ERVK -367 522 346 5 1190 24 53 0 0 chr1 79361750 79361788 -117833644 + AT_rich Low_complexity Low_complexity 1 38 0 5 1190 185 366 74 7 chr1 79361788 79361923 -117833509 - MIRb SINE MIR 0 268 125 5 1190 590 295 28 0 chr1 79362982 79363151 -117832281 + MTEa LTR MaLR 6 188 -191 5 1190 513 0 0 0 chr1 79363351 79363408 -117832024 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 5 1190 428 289 157 66 chr1 79364566 79364884 -117830548 - ORR1E LTR MaLR -9 350 4 5 1190 300 234 12 58 chr1 79365407 79365435 -117829997 - HAL1-3A_ME LINE L1 -802 2056 2031 5 1190 1015 88 0 81 chr1 79365435 79365448 -117829984 - B1_Mus1 SINE Alu 0 148 138 5 1190 396 0 0 0 chr1 79365448 79365492 -117829940 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 5 1190 1015 88 0 81 chr1 79365492 79365638 -117829794 - B1_Mus1 SINE Alu -11 137 2 5 1190 300 234 12 58 chr1 79365638 79365695 -117829737 - HAL1-3A_ME LINE L1 -828 2030 1975 5 1190 508 276 38 71 chr1 79365721 79365904 -117829528 - B3A SINE B2 -16 182 6 5 1190 338 143 16 0 chr1 79366624 79366687 -117828745 + (TAA)n Simple_repeat Simple_repeat 3 66 0 5 1190 776 268 0 39 chr1 79367012 79367218 -117828214 - B3A SINE B2 0 198 1 5 1190 1028 289 81 87 chr1 79367621 79368128 -117827304 + MT2A LTR ERVL 14 517 -16 5 1190 1200 170 61 0 chr1 79368128 79368340 -117827092 - URR1B DNA MER1_type 0 225 1 5 1190 379 272 46 187 chr1 79368687 79368822 -117826610 + MER44D DNA MER2_type 9 157 -182 5 1190 305 183 17 0 chr1 79368822 79368882 -117826550 + U2 snRNA snRNA 1 61 -127 5 1190 379 272 46 187 chr1 79368882 79368949 -117826483 + MER44D DNA MER2_type 158 233 -106 5 1190 620 197 8 69 chr1 79369417 79369548 -117825884 + B3A SINE B2 1 123 -75 5 1190 1743 47 5 0 chr1 79369937 79370152 -117825280 + L1_Mus1 LINE L1 6352 6567 0 5 1190 1259 49 0 6 chr1 79370156 79370320 -117825112 + (GAA)n Simple_repeat Simple_repeat 3 165 0 5 1190 264 0 0 0 chr1 79371822 79371853 -117823579 - L1_Mus2 LINE L1 -142 6424 6394 5 1190 726 59 0 0 chr1 79371853 79371955 -117823477 + L1_Mus2 LINE L1 6463 6564 -2 5 1190 25 0 0 0 chr1 79371959 79371984 -117823448 + AT_rich Low_complexity Low_complexity 1 25 0 5 1190 1254 95 0 0 chr1 79372637 79372816 -117822616 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 5 1190 1744 147 89 13 chr1 79374455 79374759 -117820673 + Lx2A1 LINE L1 6677 7003 -5 5 1190 675 266 74 30 chr1 79374767 79375066 -117820366 - L1MB8 LINE L1 -6 6172 5861 5 1190 24 0 0 0 chr1 79375686 79375710 -117819722 + AT_rich Low_complexity Low_complexity 1 24 0 5 1190 186 247 0 0 chr1 79375844 79375921 -117819511 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1190 544 27 27 0 chr1 79376162 79376236 -117819196 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1190 193 290 42 42 chr1 79376321 79376393 -117819039 - L2 LINE L2 -3015 404 333 5 1190 231 114 0 0 chr1 79376431 79376466 -117818966 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1190 459 0 0 0 chr1 79376785 79376836 -117818596 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1190 333 0 0 0 chr1 79376836 79376872 -117818560 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1190 425 274 23 30 chr1 79377102 79377234 -117818198 + RSINE1 SINE B4 32 162 -3 5 1190 33839 35 0 0 chr1 79377410 79382889 -117812543 + L1Md_T LINE L1 14 5589 -297 5 1190 8964 9 0 0 chr1 79382889 79383885 -117811547 + L1Md_T LINE L1 5590 6585 0 5 1190 1178 232 17 40 chr1 79383885 79383925 -117811507 + L1MD LINE L1 5616 5647 -712 5 1190 183 42 0 0 chr1 79384083 79384107 -117811325 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1190 986 229 0 16 chr1 79384107 79384298 -117811134 + B3 SINE B2 24 211 -5 5 1190 403 299 69 17 chr1 79384473 79384605 -117810827 + B1F SINE Alu 5 143 -7 5 1190 602 279 0 7 chr1 79385477 79385614 -117809818 + ID_B1 SINE B4 82 217 -7 5 1190 2236 189 7 2 chr1 79386143 79386551 -117808881 + MTC LTR MaLR 4 413 -8 5 1190 205 286 24 83 chr1 79387083 79387167 -117808265 + MIRc SINE MIR 30 108 -160 5 1190 301 259 58 12 chr1 79387880 79387966 -117807466 - MER3 DNA MER1_type -116 93 4 5 1190 198 0 0 0 chr1 79388722 79388744 -117806688 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1190 415 243 0 0 chr1 79388967 79389070 -117806362 + Lx3_Mus LINE L1 217 319 -6665 5 1190 8649 86 21 9 chr1 79389047 79390361 -117805071 + Lx3_Mus LINE L1 5632 6999 -10 5 1190 358 245 47 0 chr1 79391052 79391158 -117804274 + L1M3 LINE L1 5588 5698 -470 5 1190 356 245 10 10 chr1 79391290 79391389 -117804043 + L1MA10 LINE L1 6217 6315 -19 5 1190 2732 79 55 0 chr1 79391390 79391769 -117803663 + MTB LTR MaLR 1 400 0 5 1190 262 275 33 53 chr1 79391793 79391943 -117803489 + L1MA6 LINE L1 6137 6283 -17 5 1190 180 0 0 0 chr1 79392005 79392025 -117803407 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 5 1190 434 132 13 0 chr1 79392025 79392101 -117803331 + (GGGA)n Simple_repeat Simple_repeat 1 77 0 5 1190 902 128 7 0 chr1 79392101 79392250 -117803182 + (GGAA)n Simple_repeat Simple_repeat 4 153 0 5 1190 2078 129 3 61 chr1 79392609 79392955 -117802477 + ORR1A3 LTR MaLR 1 326 0 5 1190 206 329 47 12 chr1 79394167 79394253 -117801179 + MIR SINE MIR 52 140 -122 5 1190 704 259 99 71 chr1 79394431 79394713 -117800719 + B4A SINE B4 3 292 0 5 1190 289 303 53 105 chr1 79394740 79394987 -117800445 - LTR81C LTR ERV1? -34 1119 886 5 1190 278 320 113 39 chr1 79395831 79396062 -117799370 - Charlie13b DNA Charlie -22 490 243 5 1190 207 250 218 26 chr1 79396077 79396155 -117799277 - L2c LINE L2 0 3387 3295 5 1190 1169 249 117 26 chr1 79396657 79397000 -117798432 + ORR1D1 LTR MaLR 1 374 0 5 1190 1550 45 0 5 chr1 79398637 79398837 -117796595 + L1Md_F3 LINE L1 6372 6570 -14 5 1190 593 256 91 80 chr1 79398863 79399249 -117796183 + BGLII_B LTR ERVK 17 406 -35 5 1190 22 0 0 0 chr1 79400166 79400188 -117795244 + AT_rich Low_complexity Low_complexity 1 22 0 5 1190 2768 131 19 10 chr1 79400489 79400975 -117794457 + L1_Mur2 LINE L1 4094 4583 -1294 5 1190 254 180 16 0 chr1 79401128 79401189 -117794243 + GA-rich Low_complexity Low_complexity 4 65 0 5 1190 692 285 52 30 chr1 79401872 79402140 -117793292 + B4A SINE B4 3 276 -16 5 1190 221 365 44 67 chr1 79402366 79402394 -117793038 + B4A SINE B4 68 92 -200 5 1190 611 205 65 16 chr1 79402394 79402518 -117792914 + B1_Mur1 SINE Alu 1 130 -19 5 1190 286 311 28 46 chr1 79402626 79402734 -117792698 + B4A SINE B4 186 291 -1 5 1190 240 316 100 29 chr1 79402879 79403019 -117792413 - MIRc SINE MIR -117 151 2 5 1190 255 347 0 0 chr1 79403608 79403680 -117791752 - ID4_ SINE ID -11 72 1 5 1190 381 228 74 47 chr1 79403688 79403803 -117791629 - PB1D10 SINE Alu -2 125 1 5 1190 236 278 14 14 chr1 79403741 79403814 -117791618 - B4A SINE B4 -146 146 74 5 1190 2488 192 78 35 chr1 79403845 79404330 -117791102 - RMER15 LTR ERVL -1 574 50 5 1190 2334 70 65 71 chr1 79404330 79404697 -117790735 + RLTR10B2 LTR ERVK 1 365 0 5 1190 2574 61 9 0 chr1 79404704 79405034 -117790398 - L1Md_F2 LINE L1 -2 6580 6248 5 1190 2488 192 78 35 chr1 79405034 79405090 -117790342 - RMER15 LTR ERVL -526 49 1 5 1190 263 270 48 0 chr1 79405111 79405174 -117790258 + B4A SINE B4 27 92 -200 5 1190 265 291 117 8 chr1 79405181 79405309 -117790123 + Lx8 LINE L1 6749 6890 -583 5 1190 355 371 98 12 chr1 79405355 79405783 -117789649 + Lx8 LINE L1 6960 7424 -49 5 1190 513 47 0 0 chr1 79405809 79405873 -117789559 + (CATA)n Simple_repeat Simple_repeat 4 67 0 5 1190 588 291 11 65 chr1 79405923 79406107 -117789325 + B4A SINE B4 119 292 0 5 1190 4201 96 179 83 chr1 79406131 79406958 -117788474 - RMER17A2 LTR ERVK 0 906 1 5 1190 674 319 70 26 chr1 79407607 79407877 -117787555 - B4A SINE B4 0 292 11 5 1190 25 83 0 0 chr1 79408511 79408571 -117786861 + AT_rich Low_complexity Low_complexity 1 60 0 5 1190 3939 72 2 29 chr1 79408915 79409600 -117785832 - Lx3_Mus LINE L1 -998 6011 5349 5 1190 5425 85 12 12 chr1 79409598 79410397 -117785035 + Lx3_Mus LINE L1 6026 6824 -185 5 1190 528 65 0 0 chr1 79410399 79410476 -117784956 + L1_Mus3 LINE L1 6003 6079 -559 5 1190 335 292 81 47 chr1 79410480 79410811 -117784621 - L1M4 LINE L1 -945 5201 4867 5 1190 569 118 274 7 chr1 79410892 79411045 -117784387 + Lx3_Mus LINE L1 6815 7008 -1 5 1190 29 0 0 0 chr1 79411045 79411074 -117784358 + AT_rich Low_complexity Low_complexity 1 29 0 5 1190 351 0 0 0 chr1 79411331 79411370 -117784062 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1190 221 83 0 27 chr1 79411984 79412021 -117783411 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1190 270 81 0 0 chr1 79413361 79413398 -117782034 + (CTTG)n Simple_repeat Simple_repeat 3 39 0 5 1190 468 0 0 0 chr1 79413672 79413724 -117781708 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1190 243 0 0 0 chr1 79413917 79413944 -117781488 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5 1190 23 33 0 0 chr1 79414186 79414216 -117781216 + AT_rich Low_complexity Low_complexity 1 30 0 5 1190 369 260 10 10 chr1 79414500 79414597 -117780835 - MTD-int LTR MaLR -1161 97 1 5 1190 1279 253 47 24 chr1 79414611 79414991 -117780441 - MTD LTR MaLR -23 396 8 5 1190 230 81 27 0 chr1 79415544 79415581 -117779851 + (GAA)n Simple_repeat Simple_repeat 2 39 0 5 1190 462 79 0 0 chr1 79415576 79415639 -117779793 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 5 1190 800 104 0 8 chr1 79415640 79415766 -117779666 + (GAAAA)n Simple_repeat Simple_repeat 4 128 0 6 1190 782 66 9 0 chr1 79415766 79415872 -117779560 + B1_Mus1 SINE Alu 32 138 -10 6 1190 824 55 0 9 chr1 79415888 79415999 -117779433 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 6 1190 247 383 0 0 chr1 79416077 79416158 -117779274 + MLT1E1A LTR MaLR 357 437 -243 6 1190 212 307 0 51 chr1 79416153 79416232 -117779200 - B4A SINE B4 -217 75 1 6 1190 198 118 0 0 chr1 79417084 79417118 -117778314 + (GGA)n Simple_repeat Simple_repeat 3 36 0 6 1190 1227 234 46 19 chr1 79418249 79418510 -117776922 - B4A SINE B4 -22 270 3 6 1190 705 150 68 0 chr1 79419282 79419415 -117776017 + URR1B DNA MER1_type 80 221 -4 6 1190 300 348 87 46 chr1 79419415 79419611 -117775821 + MLT1H LTR MaLR 37 240 -309 6 1190 1215 354 121 37 chr1 79419701 79420844 -117774588 - BLACKJACK DNA AcHobo -1684 1260 22 6 1190 304 301 0 0 chr1 79422290 79422363 -117773069 + ID4_ SINE ID 11 83 0 6 1190 185 143 0 54 chr1 79424396 79424433 -117770999 + L3 LINE CR1 3452 3486 -1003 6 1190 252 283 20 33 chr1 79424446 79424596 -117770836 + (TA)n Simple_repeat Simple_repeat 1 148 0 6 1190 1093 167 83 0 chr1 79424748 79424952 -117770480 + URR1A DNA MER1_type 6 226 0 6 1190 291 28 0 0 chr1 79426046 79426082 -117769350 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1190 298 197 29 43 chr1 79426104 79426173 -117769259 - RSINE1 SINE B4 -40 125 58 6 1190 183 42 0 0 chr1 79426225 79426249 -117769183 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1190 319 165 24 0 chr1 79426719 79426804 -117768628 + GA-rich Low_complexity Low_complexity 1 87 0 6 1190 472 323 136 0 chr1 79427628 79427826 -117767606 + ORR1E LTR MaLR 13 237 -122 6 1190 316 241 82 24 chr1 79427889 79427974 -117767458 - MTE2a LTR MaLR -327 92 3 6 1190 1499 248 42 17 chr1 79428398 79428751 -117766681 - ORR1D2 LTR MaLR -8 362 1 6 1190 214 364 10 20 chr1 79428787 79428888 -117766544 - L2 LINE L2 -3264 155 56 6 1191 617 38 12 0 chr1 79429915 79429995 -117765437 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 6 1191 268 129 31 31 chr1 79430044 79430108 -117765324 + (CATA)n Simple_repeat Simple_repeat 4 67 0 6 1191 854 159 0 22 chr1 79430692 79430916 -117764516 + CT-rich Low_complexity Low_complexity 1 219 0 6 1191 181 100 24 48 chr1 79433989 79434031 -117761401 + (CATA)n Simple_repeat Simple_repeat 4 44 0 6 1191 207 176 0 0 chr1 79434634 79434668 -117760764 + A-rich Low_complexity Low_complexity 5 38 0 6 1191 22 0 0 0 chr1 79436010 79436032 -117759400 + AT_rich Low_complexity Low_complexity 1 22 0 6 1191 180 216 0 0 chr1 79437336 79437387 -117758045 + GA-rich Low_complexity Low_complexity 2 52 0 6 1191 4813 55 2 31 chr1 79437951 79438587 -117756845 + L1_Mus2 LINE L1 5950 6566 0 6 1191 764 274 103 5 chr1 79439467 79439691 -117755741 + B4A SINE B4 1 246 -46 6 1191 254 237 17 0 chr1 79439691 79439750 -117755682 + GA-rich Low_complexity Low_complexity 1 60 0 6 1191 292 258 0 0 chr1 79439766 79439828 -117755604 + B4A SINE B4 227 288 -4 6 1191 450 0 0 0 chr1 79440094 79440144 -117755288 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 6 1191 733 282 0 60 chr1 79441422 79441622 -117753810 + B3A SINE B2 1 188 -10 6 1191 724 132 8 8 chr1 79442997 79443127 -117752305 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 6 1191 2314 176 44 5 chr1 79443620 79444025 -117751407 + MTC LTR MaLR 1 421 0 6 1191 1257 89 0 0 chr1 79444245 79444413 -117751019 + B2_Mm2 SINE B2 2 169 -26 6 1191 198 0 0 0 chr1 79444413 79444435 -117750997 + (CAT)n Simple_repeat Simple_repeat 3 24 0 6 1191 245 174 14 0 chr1 79445022 79445091 -117750341 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 6 1191 255 370 29 14 chr1 79445414 79445554 -117749878 + MLT1I LTR MaLR 6 147 -264 6 1191 234 307 40 0 chr1 79445978 79446053 -117749379 + MER113 DNA MER1_type 117 194 -327 6 1191 222 298 56 2 chr1 79446511 79446595 -117748837 + MIRb SINE MIR 40 127 -149 6 1191 198 0 0 0 chr1 79446595 79446617 -117748815 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1191 297 266 29 67 chr1 79447739 79447865 -117747567 + MIR SINE MIR 24 138 -124 6 1191 226 82 0 58 chr1 79448345 79448397 -117747035 + (CAAAAA)n Simple_repeat Simple_repeat 3 51 0 6 1191 300 337 0 32 chr1 79449279 79449374 -117746058 - PB1D10 SINE Alu -21 96 5 6 1191 2411 110 78 19 chr1 79449722 79450094 -117745338 - ORR1B1 LTR MaLR 0 394 1 6 1191 252 0 0 0 chr1 79450394 79450422 -117745010 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1191 1274 284 76 21 chr1 79451509 79451983 -117743449 - RMER5 LTR ERV1 0 534 35 6 1191 406 300 93 56 chr1 79451998 79452266 -117743166 + Lx8 LINE L1 7188 7465 -8 6 1191 459 0 0 0 chr1 79452267 79452318 -117743114 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1191 284 353 80 16 chr1 79452765 79452952 -117742480 + L2b LINE L2 2981 3179 -196 6 1191 690 173 19 6 chr1 79452997 79453154 -117742278 + CT-rich Low_complexity Low_complexity 2 160 0 6 1191 854 337 33 64 chr1 79453185 79453575 -117741857 + MER74A LTR ERVL 94 471 -87 6 1191 427 247 0 41 chr1 79453576 79453673 -117741759 - MER2 DNA MER2_type -3 342 250 6 1191 527 292 60 48 chr1 79453786 79454038 -117741394 - MER2 DNA MER2_type -82 263 9 6 1191 653 245 63 0 chr1 79454729 79454872 -117740560 + B3A SINE B2 8 159 -39 6 1191 440 224 165 16 chr1 79455723 79455850 -117739582 - ID_B1 SINE B4 0 224 79 6 1191 440 307 66 16 chr1 79456073 79456331 -117739101 - L1M5 LINE L1 -670 5524 5254 6 1191 2664 77 3 0 chr1 79456573 79456899 -117738533 + ORR1A2 LTR MaLR 1 327 0 6 1191 911 188 193 0 chr1 79457128 79457309 -117738123 + B3 SINE B2 1 216 0 6 1191 359 278 124 14 chr1 79457338 79457621 -117737811 - L1M5 LINE L1 -1474 4672 4360 6 1191 310 274 16 103 chr1 79457808 79457934 -117737498 - ID_B1 SINE B4 -27 197 83 6 1191 1942 271 75 19 chr1 79458230 79458825 -117736607 - Lx8 LINE L1 -5 7468 6835 6 1191 2819 137 12 9 chr1 79458825 79459245 -117736187 + MTC LTR MaLR 1 421 0 6 1191 1942 271 75 19 chr1 79459245 79459274 -117736158 - Lx8 LINE L1 -639 6834 6809 6 1191 306 0 0 0 chr1 79459274 79459308 -117736124 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1191 1519 12 0 12 chr1 79460631 79461066 -117734366 + (GAA)n Simple_repeat Simple_repeat 1 429 0 6 1191 322 309 110 46 chr1 79461621 79461794 -117733638 + MIR SINE MIR 48 231 -31 6 1191 247 279 47 0 chr1 79462030 79462116 -117733316 - L1MA9 LINE L1 -52 6260 6171 6 1191 699 75 0 0 chr1 79462116 79462223 -117733209 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 1191 1057 88 0 22 chr1 79462248 79462387 -117733045 + B1_Mus1 SINE Alu 3 138 -10 6 1191 226 67 22 22 chr1 79462407 79462453 -117732979 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 6 1191 359 221 128 35 chr1 79462463 79462604 -117732828 - L1MA9 LINE L1 -164 6148 5995 6 1191 922 106 192 0 chr1 79462918 79463069 -117732363 + B2_Mm2 SINE B2 1 180 -15 6 1191 909 55 20 7 chr1 79463869 79464017 -117731415 + RMER17B LTR ERVK 311 460 -498 6 1191 1506 28 0 0 chr1 79464019 79464198 -117731234 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1191 414 0 0 0 chr1 79464294 79464340 -117731092 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1191 429 54 0 0 chr1 79464356 79464412 -117731020 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1191 301 264 43 52 chr1 79464651 79464767 -117730665 - LTR37B LTR ERV1 -12 456 342 6 1191 369 0 0 0 chr1 79464972 79465013 -117730419 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1191 288 283 0 0 chr1 79465017 79465077 -117730355 - RSINE1 SINE B4 -18 147 88 6 1191 328 274 13 41 chr1 79465175 79465303 -117730129 - RSINE1 SINE B4 -169 123 2 6 1191 600 327 91 19 chr1 79465493 79465802 -117729630 - MLT1A LTR MaLR -35 339 9 6 1191 376 303 157 6 chr1 79466392 79466558 -117728874 - L2 LINE L2 -927 2492 2302 6 1191 339 231 99 0 chr1 79466761 79466852 -117728580 + L1MA9 LINE L1 6204 6303 -9 6 1191 189 74 0 0 chr1 79466896 79466923 -117728509 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1191 331 358 69 54 chr1 79467387 79467591 -117727841 - MER63A DNA AcHobo 0 210 4 6 1191 22 0 0 0 chr1 79467762 79467784 -117727648 + AT_rich Low_complexity Low_complexity 1 22 0 6 1191 3431 48 10 10 chr1 79467977 79468377 -117727055 - MTB LTR MaLR 0 400 1 6 1191 373 264 143 8 chr1 79468418 79468544 -117726888 + B1F SINE Alu 1 143 -6 6 1191 180 0 0 0 chr1 79470428 79470448 -117724984 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1191 5334 220 128 27 chr1 79470568 79472040 -117723392 + L1_Mur3 LINE L1 2042 3623 -2257 6 1191 2280 135 22 0 chr1 79472040 79472359 -117723073 + ORR1A3 LTR MaLR 1 326 0 6 1191 5334 220 128 27 chr1 79472359 79472616 -117722816 + L1_Mur3 LINE L1 3624 3946 -1934 6 1191 636 246 149 0 chr1 79472603 79472798 -117722634 + Lx7 LINE L1 7097 7320 -376 6 1191 450 94 0 0 chr1 79473018 79473082 -117722350 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1191 4527 53 15 0 chr1 79474105 79474637 -117720795 + L1Md_F3 LINE L1 6031 6570 -14 6 1191 237 33 0 0 chr1 79475784 79475814 -117719618 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1191 1637 139 125 7 chr1 79475889 79476186 -117719246 - IAPEY3_LTR LTR ERVK 0 332 1 6 1191 441 0 0 0 chr1 79477060 79477109 -117718323 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1191 1438 51 10 5 chr1 79477110 79477308 -117718124 - L1_Mus3 LINE L1 -20 6618 6420 6 1191 1410 134 0 18 chr1 79477342 79477562 -117717870 + L1Md_F2 LINE L1 6358 6573 -9 6 1191 2430 111 82 37 chr1 79477803 79478205 -117717227 + Lx2 LINE L1 6578 6997 0 6 1191 189 0 0 0 chr1 79478522 79478543 -117716889 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1191 452 348 88 45 chr1 79478741 79479138 -117716294 - LTR16A LTR ERVL 0 456 43 7 1191 2002 195 90 5 chr1 79479337 79479749 -117715683 - Lx5 LINE L1 0 7050 6604 7 1191 279 0 0 0 chr1 79479777 79479808 -117715624 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1191 1133 83 0 0 chr1 79479809 79479954 -117715478 - B2_Mm2 SINE B2 -50 145 1 7 1191 5966 129 50 38 chr1 79479955 79481045 -117714387 - Lx5 LINE L1 -436 6614 5488 7 1191 308 341 104 67 chr1 79481661 79481988 -117713444 - MER76 LTR ERVL -30 661 323 7 1191 350 239 106 49 chr1 79482086 79482209 -117713223 - MER76 LTR ERVL -561 130 1 7 1191 303 243 29 0 chr1 79483893 79483963 -117711469 - ID2 SINE ID -4 79 8 7 1191 318 265 0 67 chr1 79484491 79484580 -117710852 + MLT1A1 LTR MaLR 1 83 -282 7 1191 509 364 123 34 chr1 79484592 79484916 -117710516 + ORR1D2 LTR MaLR 18 370 0 7 1191 37227 28 2 11 chr1 79484939 79490141 -117705291 + L1Md_A LINE L1 440 5586 -297 7 1191 8160 42 43 1 chr1 79490141 79491097 -117704335 + L1Md_A LINE L1 5587 6582 0 7 1191 422 315 94 70 chr1 79491101 79491388 -117704044 + MLT1A1 LTR MaLR 97 408 0 7 1191 1900 81 23 50 chr1 79491651 79491951 -117703481 + RLTR5_Mm LTR ERV1 1 292 -336 7 1191 2037 158 8 15 chr1 79492138 79492515 -117702917 + RLTR5_Mm LTR ERV1 271 628 0 7 1191 36701 70 9 4 chr1 79493877 79500000 -117695432 + L1Md_F2 LINE L1 377 6535 -47 7 1191 32 43 0 0 chr1 79500002 79500048 -117695384 + AT_rich Low_complexity Low_complexity 1 46 0 1 1191 183 373 75 42 chr1 79500427 79500640 -117694792 + L2 LINE L2 1464 1683 -1736 2 1191 225 351 82 28 chr1 79500784 79501039 -117694393 + L2 LINE L2 1794 2062 -1357 2 1191 522 0 0 0 chr1 79501047 79501105 -117694327 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1191 468 340 26 31 chr1 79501143 79501337 -117694095 + MLT1A0 LTR MaLR 29 221 -144 4 1191 210 259 34 17 chr1 79501328 79501387 -117694045 + ID_B1 SINE B4 81 140 -84 5 1191 425 326 38 13 chr1 79501410 79501575 -117693857 + MLT1A0 LTR MaLR 191 408 0 4 1191 495 0 0 0 chr1 79502149 79502204 -117693228 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1191 21 0 0 0 chr1 79503797 79503818 -117691614 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 216 0 0 0 chr1 79504298 79504322 -117691110 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1191 1024 148 36 0 chr1 79504664 79504860 -117690572 - L1_Mur3 LINE L1 -440 5440 5238 9 1191 8502 29 2 14 chr1 79504830 79505134 -117690298 - L1Md_F2 LINE L1 0 6582 6289 1 1191 3673 30 0 0 chr1 79505134 79505530 -117689902 - MTA_Mm LTR MaLR 0 396 1 1 1191 9324 50 6 2 chr1 79505530 79506624 -117688808 - MTA_Mm-int LTR MaLR 0 1098 1 1 1191 3673 30 0 0 chr1 79506624 79507020 -117688412 - MTA_Mm LTR MaLR 0 396 1 1 1191 8502 32 2 8 chr1 79507020 79508165 -117687267 - L1Md_F2 LINE L1 -294 6288 5141 1 1191 2254 166 4 111 chr1 79508157 79508402 -117687030 - L1_Mur2 LINE L1 -573 5304 5115 1 1191 1999 75 0 16 chr1 79508402 79508658 -117686774 - L1_Mus1 LINE L1 0 6567 6316 1 1191 2254 166 4 111 chr1 79508658 79508935 -117686497 - L1_Mur2 LINE L1 -763 5114 4838 1 1191 2735 209 101 46 chr1 79508926 79510080 -117685352 - RMER1B Other Other -29 1037 15 1 1191 1047 197 33 20 chr1 79510425 79510669 -117684763 - L1_Mur2 LINE L1 -1024 4856 4610 1 1191 804 279 16 33 chr1 79510667 79510912 -117684520 + Lx6 LINE L1 7193 7433 -27 1 1191 950 145 0 6 chr1 79511111 79511251 -117684181 + polypurine Low_complexity Low_complexity 4 143 0 1 1191 1280 67 0 17 chr1 79511251 79511432 -117684000 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1191 950 145 0 6 chr1 79511432 79511458 -117683974 + polypurine Low_complexity Low_complexity 144 169 0 1 1191 296 354 71 87 chr1 79512230 79512496 -117682936 - ORR1E LTR MaLR -11 348 87 1 1191 7812 104 13 0 chr1 79512845 79514585 -117680847 + L1_Mus4 LINE L1 4868 6630 -6 2 1191 1090 127 18 18 chr1 79514907 79515075 -117680357 + B2_Mm2 SINE B2 20 187 -8 2 1191 1199 244 149 16 chr1 79515205 79515575 -117679857 + MTD LTR MaLR 1 419 0 2 1191 671 274 29 63 chr1 79515575 79515813 -117679619 + MTD-int LTR MaLR 1 230 -1028 2 1191 232 300 26 52 chr1 79516217 79516333 -117679099 - RMER2 LTR ERV1 -446 121 9 2 1191 797 195 34 18 chr1 79516284 79516499 -117678933 + MTD-int LTR MaLR 149 375 -883 2 1191 372 332 81 62 chr1 79516550 79516858 -117678574 + RMER20B LTR ERVK 284 597 -30 2 1191 1793 229 274 28 chr1 79516833 79517560 -117677872 + MTD-int LTR MaLR 353 1258 0 2 1191 1569 247 69 13 chr1 79517560 79517950 -117677482 + MTD LTR MaLR 1 412 -7 2 1191 789 273 11 0 chr1 79519058 79519241 -117676191 - B3A SINE B2 -12 186 2 2 1191 455 305 96 75 chr1 79519336 79519524 -117675908 + ID_B1 SINE B4 4 195 -29 2 1191 326 281 129 36 chr1 79519601 79519741 -117675691 + HAL1-3A_ME LINE L1 2286 2438 -420 2 1191 4461 227 99 56 chr1 79522555 79522750 -117672682 + L1_Rod LINE L1 2797 3012 -2835 2 1191 3036 72 23 8 chr1 79522750 79523140 -117672292 - MTA_Mm LTR MaLR 0 396 1 2 1191 4461 227 99 56 chr1 79523140 79523670 -117671762 + L1_Rod LINE L1 3013 3580 -2267 2 1191 423 0 0 0 chr1 79523670 79523717 -117671715 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1191 4461 227 99 56 chr1 79523717 79524578 -117670854 + L1_Rod LINE L1 3581 4451 -1396 2 1191 1883 44 13 0 chr1 79524572 79524799 -117670633 + L1Md_F2 LINE L1 5357 5586 -297 3 1191 8703 46 0 2 chr1 79524800 79525797 -117669635 + L1Md_F2 LINE L1 5588 6582 0 3 1191 916 222 25 49 chr1 79525797 79526081 -117669351 + L1_Rod LINE L1 4437 4713 -1134 2 1191 916 19 0 0 chr1 79526081 79526189 -117669243 + B1_Mm SINE Alu 31 138 -9 3 1191 428 200 0 31 chr1 79526202 79526300 -117669132 + L1_Rod LINE L1 4700 4794 -1053 2 1191 281 68 23 0 chr1 79526302 79526346 -117669086 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1191 988 228 34 49 chr1 79526353 79526616 -117668816 + Lx9 LINE L1 6363 6621 -1023 3 1191 774 293 103 36 chr1 79527045 79527374 -117668058 - MLT1A0 LTR MaLR -2 363 13 3 1191 1190 75 0 7 chr1 79527490 79527638 -117667794 + B1_Mus1 SINE Alu 2 148 0 3 1191 311 0 0 25 chr1 79527638 79527678 -117667754 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1191 206 373 70 0 chr1 79527678 79527820 -117667612 - MIRb SINE MIR -40 228 77 3 1191 514 283 0 0 chr1 79527825 79527945 -117667487 + RSINE1 SINE B4 2 121 -44 3 1191 675 295 66 43 chr1 79528253 79528468 -117666964 + Charlie1b DNA MER1_type 78 306 -217 4 1191 672 286 102 0 chr1 79528468 79528664 -117666768 - B3 SINE B2 0 216 1 4 1191 675 295 66 43 chr1 79528664 79528841 -117666591 + Charlie1b DNA MER1_type 307 479 -44 4 1191 510 295 90 0 chr1 79528860 79528982 -117666450 + RSINE1 SINE B4 3 135 -30 4 1191 237 33 0 0 chr1 79528999 79529029 -117666403 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1191 1165 123 0 12 chr1 79529247 79529420 -117666012 + B2_Mm2 SINE B2 1 171 -24 4 1191 182 390 40 0 chr1 79529529 79529629 -117665803 + MIR3 SINE MIR 3 106 -102 4 1191 339 25 0 0 chr1 79530063 79530103 -117665329 + (TTAG)n Simple_repeat Simple_repeat 4 43 0 4 1191 459 320 25 32 chr1 79530121 79530279 -117665153 - B3A SINE B2 -41 157 1 4 1191 491 312 29 19 chr1 79530304 79530513 -117664919 + L1MB7 LINE L1 4580 4790 -1356 4 1191 1231 255 72 50 chr1 79530612 79530765 -117664667 + L1MB7 LINE L1 4797 4963 -1183 4 1191 6429 60 4 1 chr1 79530765 79531527 -117663905 - L1_Mus1 LINE L1 0 6567 5804 4 1191 1231 224 75 34 chr1 79531527 79532034 -117663398 + L1MB7 LINE L1 4964 5475 -703 4 1191 894 224 93 145 chr1 79532079 79532465 -117662967 - ORR1C2 LTR MaLR 0 384 19 5 1191 410 270 73 102 chr1 79532482 79532615 -117662817 + L1MB7 LINE L1 5538 5654 -530 4 1191 2181 189 28 185 chr1 79532615 79533340 -117662092 + RMER19C LTR ERVK 1 611 0 5 1191 410 270 73 102 chr1 79533340 79533577 -117661855 + L1MB7 LINE L1 5655 5897 -287 4 1191 284 318 80 0 chr1 79533584 79533672 -117661760 + PB1D10 SINE Alu 15 109 -8 5 1191 28 0 0 0 chr1 79533717 79533745 -117661687 + AT_rich Low_complexity Low_complexity 1 28 0 5 1191 862 233 134 5 chr1 79533745 79533969 -117661463 + L1MB7 LINE L1 5919 6171 -13 4 1191 1526 54 16 26 chr1 79534003 79534193 -117661239 + B2_Mm2 SINE B2 1 188 -7 5 1191 252 86 0 0 chr1 79534452 79534487 -117660945 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1191 21 36 0 0 chr1 79535171 79535199 -117660233 + AT_rich Low_complexity Low_complexity 1 28 0 5 1191 1098 212 20 0 chr1 79535337 79535540 -117659892 - B3 SINE B2 -9 207 1 5 1191 2646 67 3 0 chr1 79535748 79536061 -117659371 + L1_Mus1 LINE L1 6254 6567 0 5 1191 23 0 0 0 chr1 79536124 79536147 -117659285 + AT_rich Low_complexity Low_complexity 1 23 0 5 1191 268 322 58 0 chr1 79536638 79536725 -117658707 - B1F1 SINE Alu -56 93 2 6 1191 21 36 0 0 chr1 79536994 79537022 -117658410 + AT_rich Low_complexity Low_complexity 1 28 0 6 1191 675 0 0 0 chr1 79537246 79537321 -117658111 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 6 1191 331 269 64 0 chr1 79538004 79538082 -117657350 + B1F SINE Alu 30 112 -37 6 1191 396 0 0 0 chr1 79538087 79538131 -117657301 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1191 251 325 13 0 chr1 79538232 79538309 -117657123 - ID4 SINE ID -3 80 3 6 1191 344 292 57 24 chr1 79538323 79538446 -117656986 - B1F SINE Alu -2 147 21 6 1191 915 65 0 0 chr1 79538446 79538569 -117656863 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 6 1191 1247 22 0 0 chr1 79538569 79538704 -117656728 - B1_Mm SINE Alu -11 136 2 6 1191 182 280 0 20 chr1 79539512 79539563 -117655869 + MER5A DNA MER1_type 117 166 -23 6 1191 672 186 70 0 chr1 79539764 79539893 -117655539 + B3 SINE B2 4 141 -75 7 1191 22 0 0 0 chr1 79539902 79539924 -117655508 + AT_rich Low_complexity Low_complexity 1 22 0 7 1191 229 317 9 103 chr1 79540980 79541096 -117654336 + MLT2D LTR ERVL 392 496 -64 7 1191 1414 248 54 90 chr1 79541373 79541684 -117653748 + Lx6 LINE L1 7013 7311 -149 7 1191 1071 109 0 0 chr1 79541684 79541822 -117653610 - B1_Mus1 SINE Alu -9 139 2 7 1191 1414 248 54 90 chr1 79541822 79541975 -117653457 + Lx6 LINE L1 7312 7460 0 7 1191 554 280 13 13 chr1 79542550 79542702 -117652730 - MLT1C LTR MaLR -272 195 44 7 1191 3503 46 5 0 chr1 79542720 79543114 -117652318 + MTA_Mm LTR MaLR 1 396 0 7 1191 9560 46 4 1 chr1 79543114 79544209 -117651223 + MTA_Mm-int LTR MaLR 1 1098 0 7 1191 675 0 0 0 chr1 79544209 79544286 -117651146 + MTA_Mm LTR MaLR 1 77 -319 7 1191 563 26 0 13 chr1 79544284 79544361 -117651071 + MTA_Mm-int LTR MaLR 1023 1098 0 7 1191 3549 23 29 0 chr1 79544361 79544746 -117650686 + MTA_Mm LTR MaLR 1 396 0 7 1191 1535 211 51 34 chr1 79545319 79545673 -117649759 - MTD LTR MaLR 0 419 60 7 1191 2238 160 24 3 chr1 79546008 79546377 -117649055 + ORR1C1 LTR MaLR 2 378 0 7 1191 37655 38 11 11 chr1 79546659 79548367 -117647065 - L1Md_T LINE L1 0 6582 4874 8 1191 225 183 46 77 chr1 79548367 79548432 -117647000 + RMER20A LTR ERVK 186 248 -268 8 1191 37655 38 11 11 chr1 79548432 79552097 -117643335 - L1Md_T LINE L1 0 4873 1203 8 1191 6759 58 0 18 chr1 79552063 79552936 -117642496 - L1Md_Gf LINE L1 -5380 1142 286 8 1191 324 233 113 28 chr1 79553462 79553568 -117641864 + MLT1L LTR MaLR 352 466 -144 8 1191 234 0 0 0 chr1 79554194 79554220 -117641212 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1191 3273 129 144 36 chr1 79554885 79555268 -117640164 - RMER19C LTR ERVK 0 611 222 8 1191 900 206 194 0 chr1 79555268 79555448 -117639984 + B3 SINE B2 2 216 0 8 1191 3273 129 144 36 chr1 79555448 79555613 -117639819 - RMER19C LTR ERVK -390 221 4 8 1191 24 0 0 0 chr1 79556898 79556922 -117638510 + AT_rich Low_complexity Low_complexity 1 24 0 8 1191 630 309 44 55 chr1 79556958 79557229 -117638203 - B4A SINE B4 -24 268 1 8 1191 274 306 35 69 chr1 79558555 79558671 -117636761 - MLT1A1 LTR MaLR -3 405 294 8 1191 240 167 40 40 chr1 79558838 79558888 -117636544 - MLT1A1 LTR MaLR -236 129 80 8 1191 294 336 76 25 chr1 79559083 79559202 -117636230 + B4A SINE B4 66 190 -102 9 1191 417 311 9 0 chr1 79559108 79559214 -117636218 + PB1D10 SINE Alu 6 112 -5 9 1191 1017 130 0 0 chr1 79559476 79559638 -117635794 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 9 1191 1207 75 0 0 chr1 79559651 79559798 -117635634 + B1_Mus2 SINE Alu 1 147 0 9 1191 216 97 0 0 chr1 79559800 79559831 -117635601 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1191 293 390 36 36 chr1 79559977 79560198 -117635234 - MIRb SINE MIR -8 260 40 9 1192 1208 243 47 99 chr1 79561213 79561637 -117633795 - MTD LTR MaLR -13 406 5 9 1192 290 330 61 0 chr1 79561637 79561752 -117633680 - B1F SINE Alu -14 135 14 9 1192 371 349 0 9 chr1 79561776 79561883 -117633549 - PB1D10 SINE Alu 0 117 12 9 1192 743 235 153 0 chr1 79561917 79562087 -117633345 - B3 SINE B2 -20 196 1 9 1192 504 0 0 0 chr1 79562109 79562165 -117633267 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1192 536 29 14 0 chr1 79562166 79562236 -117633196 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1192 929 86 0 0 chr1 79562287 79562552 -117632880 + L1_Mus2 LINE L1 6439 6566 0 1 1192 1309 77 59 0 chr1 79562562 79562732 -117632700 + B2_Mm2 SINE B2 3 182 -13 1 1192 1032 72 0 0 chr1 79562733 79562871 -117632561 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 1 1192 190 291 100 12 chr1 79563221 79563301 -117632131 - MIR SINE MIR -101 161 75 1 1192 667 277 74 87 chr1 79563547 79563724 -117631708 - MTE2b LTR MaLR 0 379 201 1 1192 1311 113 11 26 chr1 79563724 79563914 -117631518 + B2_Mm2 SINE B2 1 187 -8 1 1192 667 277 74 87 chr1 79563914 79564048 -117631384 - MTE2b LTR MaLR -179 200 72 1 1192 243 0 0 0 chr1 79564437 79564464 -117630968 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1 1192 7127 60 1 9 chr1 79564746 79565635 -117629797 - L1_Mus2 LINE L1 0 6566 5685 1 1192 518 208 23 8 chr1 79566234 79566365 -117629067 + Lx9 LINE L1 7505 7637 -7 1 1192 1128 199 0 10 chr1 79566391 79566599 -117628833 + B3 SINE B2 9 214 -2 1 1192 32 0 0 0 chr1 79566611 79566643 -117628789 + AT_rich Low_complexity Low_complexity 1 32 0 1 1192 1247 176 28 9 chr1 79567281 79567499 -117627933 + URR1B DNA MER1_type 4 225 0 1 1192 3358 149 244 2 chr1 79568353 79568946 -117626486 - RMER19A LTR ERVK 0 737 1 1 1192 431 286 119 25 chr1 79569482 79569726 -117625706 + L1MC4 LINE L1 1577 1843 -4372 1 1192 400 301 87 43 chr1 79569827 79570289 -117625143 + L1MC4 LINE L1 2040 2521 -3694 1 1192 451 318 12 70 chr1 79570615 79570872 -117624560 + L1MD3 LINE L1 7739 7980 -15 1 1192 541 273 55 48 chr1 79570869 79570942 -117624490 + L1MA9 LINE L1 6000 6078 -234 1 1192 1830 161 203 3 chr1 79570942 79571291 -117624141 - MTC LTR MaLR 0 421 3 1 1192 541 274 47 53 chr1 79571291 79571522 -117623910 + L1MA9 LINE L1 6079 6291 0 1 1192 338 280 45 107 chr1 79571726 79571950 -117623482 - L1MA4A LINE L1 -365 5938 5729 1 1192 298 321 35 12 chr1 79571966 79572051 -117623381 - 5S rRNA rRNA -31 90 4 1 1192 1638 212 57 98 chr1 79572682 79573101 -117622331 - Lx5 LINE L1 0 7050 6649 1 1192 2375 187 104 2 chr1 79573103 79573591 -117621841 - Lx5 LINE L1 -511 6539 6002 1 1192 221 139 23 0 chr1 79574536 79574579 -117620853 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1192 302 333 29 5 chr1 79574672 79574769 -117620663 - PB1D10 SINE Alu -21 99 1 1 1192 225 0 0 0 chr1 79575754 79575779 -117619653 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1192 196 350 24 24 chr1 79575814 79575896 -117619536 - MIRb SINE MIR -147 121 40 1 1192 942 256 62 133 chr1 79576310 79576716 -117618716 - MTE2a LTR MaLR 0 379 3 1 1192 252 0 0 0 chr1 79576799 79576827 -117618605 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1192 227 355 183 12 chr1 79576861 79577112 -117618320 - L2 LINE L2 -599 2820 2527 1 1192 312 277 8 82 chr1 79578468 79578590 -117616842 - MLT1A LTR MaLR -6 368 256 1 1192 443 264 63 8 chr1 79578701 79578827 -117616605 - ID_B1 SINE B4 -7 217 85 1 1192 272 294 20 84 chr1 79578853 79579001 -117616431 - MLT1A LTR MaLR -225 140 4 1 1192 243 0 0 0 chr1 79579953 79579980 -117615452 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1192 351 0 0 0 chr1 79579980 79580018 -117615414 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1192 424 343 62 39 chr1 79580118 79580376 -117615056 + ORR1E LTR MaLR 85 348 -11 1 1192 530 320 98 27 chr1 79580646 79580871 -117614561 - Tigger5 DNA MER2_type -2164 242 2 1 1192 504 0 0 0 chr1 79581283 79581339 -117614093 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1192 702 0 0 0 chr1 79581558 79581636 -117613796 + (GGAAA)n Simple_repeat Simple_repeat 3 80 0 1 1192 1467 75 0 0 chr1 79581636 79581996 -117613436 + (GGAGA)n Simple_repeat Simple_repeat 1 360 0 1 1192 256 237 214 26 chr1 79582004 79582121 -117613311 + B1F SINE Alu 2 140 -9 1 1192 3028 151 57 23 chr1 79582476 79582555 -117612877 - RLTR20A LTR ERVK 0 541 441 1 1192 342 0 0 0 chr1 79582555 79582593 -117612839 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1192 3028 151 57 23 chr1 79582593 79583036 -117612396 - RLTR20A LTR ERVK -101 440 2 1 1192 462 336 50 47 chr1 79584223 79584645 -117610787 - ERVL-B4-int LTR ERVL -2943 2771 2349 1 1192 210 37 0 0 chr1 79584774 79584801 -117610631 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1192 748 292 0 40 chr1 79585019 79585219 -117610213 + B3A SINE B2 3 194 -4 1 1192 186 239 22 0 chr1 79585332 79585378 -117610054 - L2b LINE L2 -9 3366 3320 1 1192 351 96 0 0 chr1 79585936 79585988 -117609444 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1192 803 51 10 4 chr1 79586573 79586693 -117608739 + Lx3C LINE L1 6469 6578 -403 1 1192 423 0 0 0 chr1 79587703 79587750 -117607682 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1192 1128 281 24 24 chr1 79587776 79588068 -117607364 + B4 SINE B4 1 292 0 1 1192 922 54 16 0 chr1 79589058 79589187 -117606245 + (TCTCCC)n Simple_repeat Simple_repeat 5 135 0 1 1192 22 0 0 0 chr1 79589197 79589219 -117606213 + AT_rich Low_complexity Low_complexity 1 22 0 1 1192 255 365 48 14 chr1 79589497 79589644 -117605788 + MIRm SINE MIR 34 185 -91 1 1192 2811 158 68 17 chr1 79589726 79590162 -117605270 + RLTR20B2 LTR ERVK 1 463 -97 1 1192 216 0 0 0 chr1 79590162 79590186 -117605246 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1192 2811 158 68 17 chr1 79590186 79590278 -117605154 + RLTR20B2 LTR ERVK 464 555 -5 1 1192 180 111 0 0 chr1 79590671 79590698 -117604734 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1 1192 218 260 0 20 chr1 79591016 79591067 -117604365 + GA-rich Low_complexity Low_complexity 3 52 0 1 1192 498 83 0 0 chr1 79591428 79591500 -117603932 + (GGA)n Simple_repeat Simple_repeat 3 74 0 1 1192 3145 21 0 0 chr1 79592349 79592681 -117602751 + IAPEY3_LTR LTR ERVK 1 332 0 1 1192 427 269 89 21 chr1 79592915 79593105 -117602327 + L1MA6 LINE L1 6081 6283 -17 1 1192 406 275 48 32 chr1 79593535 79593659 -117601773 - MER58C DNA MER1_type -86 129 4 1 1192 255 361 0 9 chr1 79594111 79594220 -117601212 - MER77 LTR ERVL -99 508 401 1 1192 3038 126 29 37 chr1 79594378 79594472 -117600960 - Lx2 LINE L1 -1 6996 6913 1 1192 3590 33 5 0 chr1 79594472 79594866 -117600566 - MTA_Mm LTR MaLR 0 396 1 1 1192 3038 126 29 37 chr1 79594866 79595282 -117600150 - Lx2 LINE L1 -85 6912 6490 1 1192 27 29 0 0 chr1 79596345 79596379 -117599053 + AT_rich Low_complexity Low_complexity 1 34 0 1 1192 824 159 7 58 chr1 79596475 79596629 -117598803 + B1_Mus2 SINE Alu 2 147 0 1 1192 471 18 0 0 chr1 79596730 79596786 -117598646 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1192 2373 108 6 24 chr1 79596805 79597137 -117598295 + ORR1A2 LTR MaLR 1 326 -1 1 1192 829 242 0 25 chr1 79597314 79597475 -117597957 + RSINE1 SINE B4 3 159 -6 1 1192 381 93 0 0 chr1 79597486 79597540 -117597892 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1 1192 206 62 31 0 chr1 79597846 79597878 -117597554 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1192 504 271 145 78 chr1 79597994 79598339 -117597093 - ORR1D2 LTR MaLR 0 374 7 1 1192 345 332 128 51 chr1 79598623 79598880 -117596552 - MLT1J2 LTR MaLR -166 282 6 1 1192 194 235 14 81 chr1 79598980 79599054 -117596378 - L3 LINE CR1 -93 4396 4328 1 1192 2620 97 88 117 chr1 79599752 79599859 -117595573 + RLTR23 LTR ERV1 1 105 -325 1 1192 600 14 0 0 chr1 79599859 79599928 -117595504 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1192 2620 97 88 117 chr1 79599928 79600263 -117595169 + RLTR23 LTR ERV1 106 430 0 1 1192 1340 198 167 20 chr1 79600296 79600560 -117594872 - MTD LTR MaLR -12 407 106 1 1192 1487 78 5 15 chr1 79600560 79600756 -117594676 + B2_Mm2 SINE B2 2 195 0 1 1192 1340 218 195 12 chr1 79600756 79600846 -117594586 - MTD LTR MaLR -314 105 1 1 1192 260 254 14 157 chr1 79601477 79601493 -117593939 - RMER1C Other Other -23 1319 1257 1 1192 297 273 54 18 chr1 79601493 79601605 -117593827 - Lx7 LINE L1 -19 7677 7562 1 1192 260 254 14 157 chr1 79601605 79601617 -117593815 - RMER1C Other Other -23 1256 1200 1 1192 240 351 18 0 chr1 79601608 79601722 -117593710 - Lx7 LINE L1 -360 7336 7221 1 1192 1921 199 35 18 chr1 79602138 79602532 -117592900 + MTD LTR MaLR 1 401 -18 1 1192 447 281 35 6 chr1 79602537 79602709 -117592723 + GA-rich Low_complexity Low_complexity 2 178 0 1 1192 2905 0 0 0 chr1 79603709 79604011 -117591421 + L1Md_T LINE L1 6281 6582 0 1 1192 741 169 0 0 chr1 79604660 79604796 -117590636 + GA-rich Low_complexity Low_complexity 2 137 0 1 1192 207 0 0 0 chr1 79606115 79606138 -117589294 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1192 796 176 81 6 chr1 79606705 79606865 -117588567 + URR1A DNA MER1_type 54 225 -1 1 1192 377 200 0 36 chr1 79607303 79607386 -117588046 - Arthur1B DNA Tip100 -1070 155 76 1 1192 1353 34 0 0 chr1 79607856 79608004 -117587428 - B1_Mus1 SINE Alu 0 148 1 1 1192 806 110 6 105 chr1 79608384 79608546 -117586886 + URR1A DNA MER1_type 81 226 0 1 1192 567 190 30 10 chr1 79609704 79609805 -117585627 + PB1D10 SINE Alu 2 104 -13 1 1192 198 0 0 0 chr1 79609814 79609836 -117585596 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1192 1328 213 68 63 chr1 79611159 79611510 -117583922 + ORR1E LTR MaLR 5 357 -2 1 1192 735 44 0 0 chr1 79612113 79612204 -117583228 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1 1192 1032 110 37 0 chr1 79612207 79612370 -117583062 - B2_Mm2 SINE B2 -26 169 1 1 1192 561 194 6 6 chr1 79612818 79612938 -117582494 + B1_Mur2 SINE Alu 1 120 0 1 1192 935 144 88 11 chr1 79613276 79613458 -117581974 + RLTR14 LTR ERV1 1 196 -186 1 1192 345 123 0 0 chr1 79613529 79613594 -117581838 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1192 266 0 0 29 chr1 79613618 79613653 -117581779 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1 1192 1209 54 0 7 chr1 79613897 79614046 -117581386 + B1_Mus1 SINE Alu 1 148 0 1 1192 1076 75 174 0 chr1 79614220 79614381 -117581051 + B2_Mm2 SINE B2 1 189 -6 1 1192 216 0 0 0 chr1 79614726 79614750 -117580682 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1192 369 0 0 0 chr1 79614870 79614911 -117580521 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1192 664 209 85 0 chr1 79616608 79616737 -117578695 + B1_Mm SINE Alu 1 140 -7 2 1192 1191 43 0 0 chr1 79616792 79616930 -117578502 + B1_Mus1 SINE Alu 2 139 -9 2 1192 297 0 0 0 chr1 79616941 79616974 -117578458 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1192 6237 130 31 9 chr1 79617008 79617288 -117578144 + Lx4B LINE L1 5752 6028 -1030 2 1192 249 33 0 0 chr1 79617288 79617318 -117578114 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 2 1192 6237 133 48 11 chr1 79617318 79618197 -117577235 + Lx4B LINE L1 6029 7023 -35 2 1192 189 0 0 0 chr1 79618216 79618237 -117577195 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1192 1382 206 148 19 chr1 79618807 79619173 -117576259 + MTC LTR MaLR 1 413 -8 2 1192 204 132 0 26 chr1 79619847 79619886 -117575546 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1192 187 300 36 73 chr1 79621086 79621222 -117574210 + MIRc SINE MIR 15 146 -122 2 1192 198 0 0 0 chr1 79622071 79622093 -117573339 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2 1192 288 91 0 0 chr1 79622325 79622369 -117573063 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2 1192 284 0 28 0 chr1 79622762 79622798 -117572634 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 2 1192 872 209 72 29 chr1 79622816 79622985 -117572447 + B3 SINE B2 1 181 -35 2 1192 453 36 0 0 chr1 79622985 79623040 -117572392 + (CATA)n Simple_repeat Simple_repeat 4 58 0 2 1192 872 209 72 29 chr1 79623040 79623077 -117572355 + B3 SINE B2 182 215 -1 2 1192 252 275 27 109 chr1 79623430 79623577 -117571855 - RSINE1 SINE B4 -1 164 30 2 1192 336 161 37 0 chr1 79623590 79623671 -117571761 + CT-rich Low_complexity Low_complexity 3 86 0 2 1192 1184 249 109 14 chr1 79624082 79624449 -117570983 + MTD LTR MaLR 5 406 -13 2 1192 327 65 0 0 chr1 79624510 79624556 -117570876 + (CTAG)n Simple_repeat Simple_repeat 3 48 0 2 1192 1422 50 0 0 chr1 79625560 79625739 -117569693 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 1192 469 227 55 0 chr1 79627219 79627329 -117568103 + PB1D9 SINE Alu 5 120 0 2 1192 244 328 31 0 chr1 79627840 79627968 -117567464 + L1MC2 LINE L1 6030 6161 -183 2 1192 4268 190 24 8 chr1 79627982 79628782 -117566650 + RMER1A Other Other 216 1028 -2 2 1192 195 42 0 0 chr1 79629033 79629057 -117566375 + (G)n Simple_repeat Simple_repeat 1 24 0 2 1192 243 0 0 0 chr1 79629576 79629603 -117565829 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1192 232 323 39 16 chr1 79630090 79630219 -117565213 + HAL1 LINE L1 14 145 -2362 2 1192 228 286 16 0 chr1 79630398 79630461 -117564971 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1192 674 236 19 133 chr1 79630952 79631162 -117564270 + B3A SINE B2 10 198 0 2 1192 603 102 0 0 chr1 79631230 79631318 -117564114 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 1192 218 333 13 0 chr1 79632248 79632326 -117563106 + RSINE1 SINE B4 8 86 -79 2 1192 1113 84 6 0 chr1 79632260 79632426 -117563006 + B2_Mm1a SINE B2 20 186 -7 2 1192 546 193 117 26 chr1 79632579 79632733 -117562699 - L1MA9 LINE L1 -151 6161 5994 2 1192 207 156 0 0 chr1 79633279 79633311 -117562121 + (ATG)n Simple_repeat Simple_repeat 1 32 0 2 1192 294 50 0 0 chr1 79633414 79633454 -117561978 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2 1192 1606 117 124 0 chr1 79633454 79633744 -117561688 + IAPEY3_LTR LTR ERVK 2 327 -5 2 1192 557 256 94 121 chr1 79634961 79635302 -117560130 + MLT1B LTR MaLR 1 339 -51 2 1192 242 254 133 56 chr1 79635967 79636163 -117559269 - Charlie8 DNA MER1_type -2189 239 29 2 1192 508 267 119 48 chr1 79636232 79636500 -117558932 + B4 SINE B4 2 288 -4 2 1192 417 20 0 0 chr1 79637295 79637345 -117558087 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1192 231 88 0 0 chr1 79637365 79637399 -117558033 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 2 1192 264 255 200 11 chr1 79637399 79637494 -117557938 + PB1D10 SINE Alu 3 115 -2 2 1192 1281 104 22 6 chr1 79637511 79637694 -117557738 + B2_Mm2 SINE B2 1 186 -9 2 1192 690 75 0 0 chr1 79637771 79637864 -117557568 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 2 1192 581 298 32 45 chr1 79637898 79638144 -117557288 + MLT1C LTR MaLR 6 248 -219 2 1192 449 188 73 21 chr1 79638391 79638518 -117556914 + B1_Mur3 SINE Alu 20 149 0 2 1192 995 95 7 33 chr1 79638529 79638681 -117556751 + B1_Mus1 SINE Alu 1 148 0 2 1192 206 105 0 50 chr1 79638683 79638723 -117556709 + A-rich Low_complexity Low_complexity 5 42 0 2 1192 198 0 0 0 chr1 79638727 79638749 -117556683 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1192 1055 276 52 40 chr1 79638966 79639461 -117555971 + L1MC LINE L1 3692 4192 -1954 2 1192 249 244 29 0 chr1 79639707 79639778 -117555654 - MIRb SINE MIR -2 260 183 2 1192 184 269 24 49 chr1 79640109 79640191 -117555241 - L2 LINE L2 -3142 277 198 2 1192 540 275 81 17 chr1 79641780 79641954 -117553478 + RMER15 LTR ERVL 286 470 -105 2 1192 248 289 0 35 chr1 79642482 79642568 -117552864 + ID_B1 SINE B4 79 161 -63 2 1192 295 250 12 23 chr1 79642496 79642582 -117552850 + PB1D10 SINE Alu 11 95 -22 2 1192 232 197 3 17 chr1 79642645 79642720 -117552712 + B1_Mur2 SINE Alu 43 149 0 2 1192 1362 91 38 0 chr1 79643195 79643381 -117552051 + B2_Mm1a SINE B2 1 193 0 2 1192 360 0 0 0 chr1 79643614 79643654 -117551778 + (TAA)n Simple_repeat Simple_repeat 1 40 0 2 1192 247 254 32 0 chr1 79644032 79644095 -117551337 + ID4_ SINE ID 8 72 -11 2 1192 373 277 92 84 chr1 79644609 79644893 -117550539 - B4A SINE B4 -4 288 3 2 1192 294 321 66 15 chr1 79645509 79645645 -117549787 + B1F SINE Alu 1 143 -6 2 1192 615 92 0 0 chr1 79645842 79645929 -117549503 + (TGG)n Simple_repeat Simple_repeat 3 89 0 2 1192 642 127 0 56 chr1 79645980 79646105 -117549327 + B1_Mur4 SINE Alu 2 119 -31 2 1192 331 263 57 50 chr1 79645984 79646124 -117549308 + B4 SINE B4 90 230 -62 2 1192 316 227 13 39 chr1 79646135 79646213 -117549219 + B1F SINE Alu 74 149 0 2 1192 243 0 0 0 chr1 79646508 79646535 -117548897 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1192 600 266 22 0 chr1 79646546 79646685 -117548747 - ID_B1 SINE B4 -3 221 80 2 1192 227 83 0 0 chr1 79646686 79646722 -117548710 - B1F2 SINE Alu -88 61 26 2 1192 880 324 64 21 chr1 79646722 79647183 -117548249 - L1_Mur2 LINE L1 -380 5791 5320 2 1192 229 313 0 46 chr1 79648114 79648201 -117547231 + BC1_Mm scRNA scRNA 2 84 -68 2 1192 1988 110 182 0 chr1 79648227 79648546 -117546886 + RLTR14 LTR ERV1 3 379 -3 2 1192 13579 6 0 0 chr1 79649055 79650557 -117544875 + L1Md_A LINE L1 4085 5586 -297 2 1192 9211 2 0 0 chr1 79650557 79651553 -117543879 + L1Md_A LINE L1 5587 6582 0 2 1192 277 301 43 11 chr1 79651555 79651649 -117543783 - MamRep4096 DNA hAT? -309 117 21 2 1192 589 237 95 50 chr1 79652102 79652302 -117543130 + B4A SINE B4 2 210 -82 2 1192 180 97 0 0 chr1 79653034 79653065 -117542367 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1192 1247 21 0 20 chr1 79653420 79653568 -117541864 + B1_Mus2 SINE Alu 1 145 -2 2 1192 29 47 0 0 chr1 79654521 79654564 -117540868 + AT_rich Low_complexity Low_complexity 1 43 0 2 1192 281 68 0 22 chr1 79654661 79654706 -117540726 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 1192 184 122 49 0 chr1 79655883 79655924 -117539508 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1192 284 269 172 88 chr1 79655973 79656165 -117539267 - B4 SINE B4 -15 277 70 2 1192 225 244 50 25 chr1 79657212 79657292 -117538140 + ID2 SINE ID 2 83 0 2 1192 569 206 45 22 chr1 79657537 79657671 -117537761 - B1F SINE Alu -12 137 1 2 1192 1363 68 0 11 chr1 79657910 79658088 -117537344 + B2_Mm2 SINE B2 1 176 -19 2 1192 228 288 82 0 chr1 79658109 79658182 -117537250 + ID4_ SINE ID 4 82 -1 2 1192 183 147 0 0 chr1 79658354 79658372 -117537060 + (TTTC)n Simple_repeat Simple_repeat 3 20 0 2 1192 731 201 14 14 chr1 79658372 79658513 -117536919 - B1_Mus2 SINE Alu -6 141 1 2 1192 183 147 0 0 chr1 79658513 79658528 -117536904 + (TTTC)n Simple_repeat Simple_repeat 4 18 0 2 1192 853 45 3 8 chr1 79658535 79658671 -117536761 - B1_Mus1 SINE Alu 0 150 19 2 1192 362 243 117 0 chr1 79658575 79658686 -117536746 - B4 SINE B4 -88 204 81 2 1192 398 91 15 90 chr1 79658686 79658819 -117536613 + CT-rich Low_complexity Low_complexity 5 127 0 2 1192 883 127 23 46 chr1 79658825 79658999 -117536433 - B2_Mm2 SINE B2 -22 173 4 2 1192 1199 62 0 0 chr1 79659268 79659414 -117536018 + B1_Mus2 SINE Alu 2 147 0 2 1192 249 151 0 0 chr1 79659432 79659485 -117535947 + A-rich Low_complexity Low_complexity 1 53 0 2 1192 388 241 0 12 chr1 79659795 79659955 -117535477 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1192 280 301 117 48 chr1 79659984 79660255 -117535177 - B4 SINE B4 -16 276 2 2 1192 337 202 36 0 chr1 79660292 79660376 -117535056 - PB1D7 SINE Alu 0 120 34 2 1192 255 114 0 0 chr1 79660390 79660434 -117534998 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1192 922 90 97 0 chr1 79660434 79660568 -117534864 - B1_Mus1 SINE Alu 0 148 2 2 1192 206 258 0 70 chr1 79660851 79660922 -117534510 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 2 1192 291 243 0 28 chr1 79660934 79661006 -117534426 + L1MA4 LINE L1 5857 5926 -374 2 1192 29 47 0 0 chr1 79661332 79661375 -117534057 + AT_rich Low_complexity Low_complexity 1 43 0 2 1192 473 274 0 0 chr1 79661482 79661595 -117533837 - PB1D9 SINE Alu -6 114 2 3 1192 736 258 135 41 chr1 79662389 79662656 -117532776 + B4A SINE B4 1 292 0 3 1192 288 266 75 178 chr1 79663072 79663460 -117531972 + RMER10A LTR ERVL 70 417 -25 3 1192 948 152 79 0 chr1 79663629 79663807 -117531625 + URR1A DNA MER1_type 35 226 0 3 1192 280 23 22 43 chr1 79664164 79664210 -117531222 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1192 396 0 0 0 chr1 79664668 79664712 -117530720 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1192 207 0 0 0 chr1 79664712 79664734 -117530698 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1192 390 282 24 24 chr1 79665423 79665550 -117529882 + B1F2 SINE Alu 9 135 -14 3 1192 285 29 0 0 chr1 79666430 79666464 -117528968 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1192 237 354 10 20 chr1 79666775 79666873 -117528559 - Charlie1 DNA MER1_type -2668 113 17 3 1192 217 320 0 52 chr1 79668584 79668719 -117526713 + C-rich Low_complexity Low_complexity 1 128 0 3 1192 230 153 53 165 chr1 79669220 79669353 -117526079 - Lx9 LINE L1 -1 7643 7526 3 1192 447 19 0 0 chr1 79669356 79669408 -117526024 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1192 366 189 14 0 chr1 79669410 79669484 -117525948 - Lx9 LINE L1 -189 7455 7381 3 1192 184 322 152 38 chr1 79670829 79670987 -117524445 - MIRb SINE MIR -43 225 50 3 1192 213 196 0 0 chr1 79671088 79671134 -117524298 + CT-rich Low_complexity Low_complexity 4 49 0 3 1192 384 211 13 13 chr1 79671136 79671213 -117524219 - ID4 SINE ID -5 78 2 3 1192 328 217 65 0 chr1 79671251 79671263 -117524169 + MTD LTR MaLR 1 12 -407 3 1192 321 26 0 0 chr1 79671263 79671301 -117524131 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 3 1192 328 217 65 0 chr1 79671301 79671380 -117524052 + MTD LTR MaLR 13 96 -323 3 1192 467 91 26 0 chr1 79671385 79671462 -117523970 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1192 583 43 43 11 chr1 79671490 79671584 -117523848 - L1_Mus4 LINE L1 -2 6634 6538 3 1192 821 194 218 53 chr1 79671599 79671803 -117523629 + MTD LTR MaLR 115 373 -46 3 1192 1078 77 28 7 chr1 79671803 79671946 -117523486 - B1_Mus2 SINE Alu 0 147 2 3 1192 821 194 218 53 chr1 79671946 79672003 -117523429 + MTD LTR MaLR 374 419 0 3 1192 258 106 0 0 chr1 79672425 79672472 -117522960 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1192 302 292 9 28 chr1 79673036 79673145 -117522287 - PB1D10 SINE Alu -8 109 3 3 1192 348 244 22 72 chr1 79673158 79673242 -117522190 - RMER17D LTR ERVK -342 547 469 3 1192 315 0 0 0 chr1 79673242 79673277 -117522155 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1192 348 244 22 72 chr1 79673277 79673373 -117522059 - RMER17D LTR ERVK -421 468 377 3 1192 504 0 0 0 chr1 79673405 79673461 -117521971 + (CAAAA)n Simple_repeat Simple_repeat 4 59 0 3 1192 612 288 105 102 chr1 79673461 79673794 -117521638 + MLT1A1 LTR MaLR 75 408 0 3 1192 262 196 0 0 chr1 79673978 79674029 -117521403 + RSINE1 SINE B4 9 59 -106 3 1192 535 224 0 41 chr1 79675530 79675651 -117519781 - PB1D10 SINE Alu -1 116 1 3 1192 198 262 49 0 chr1 79676023 79676084 -117519348 + MIRb SINE MIR 103 166 -102 3 1192 289 238 208 24 chr1 79676344 79676469 -117518963 + PB1D9 SINE Alu 1 148 -1 3 1192 213 39 0 0 chr1 79676514 79676540 -117518892 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1192 1242 21 7 0 chr1 79676540 79676684 -117518748 - B1_Mm SINE Alu -2 145 1 3 1192 293 279 76 9 chr1 79676696 79676801 -117518631 + PB1D10 SINE Alu 6 117 0 3 1192 336 148 0 0 chr1 79676805 79676866 -117518566 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1192 222 303 30 0 chr1 79677198 79677264 -117518168 - ID4 SINE ID -14 69 2 3 1192 1147 76 7 0 chr1 79677727 79677872 -117517560 + B1_Mus1 SINE Alu 3 148 0 3 1192 213 94 0 0 chr1 79677872 79677904 -117517528 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 3 1192 843 178 191 16 chr1 79677930 79678113 -117517319 + B3 SINE B2 2 216 0 3 1192 1108 127 46 0 chr1 79678131 79678304 -117517128 + B2_Mm2 SINE B2 1 181 -14 3 1192 309 84 330 46 chr1 79678351 79678460 -117516972 + B2_Mm2 SINE B2 47 186 -9 3 1192 234 0 0 0 chr1 79679686 79679712 -117515720 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1192 188 34 0 33 chr1 79679785 79679815 -117515617 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1192 207 0 0 0 chr1 79680596 79680619 -117514813 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1192 2389 122 37 26 chr1 79680625 79681053 -117514379 - RMER6B LTR ERVK -28 433 1 3 1192 238 321 36 44 chr1 79681647 79681784 -117513648 - MIR SINE MIR -120 142 7 3 1192 302 0 26 0 chr1 79682563 79682601 -117512831 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1192 1133 51 0 0 chr1 79682601 79682738 -117512694 - B1_Mus1 SINE Alu -10 138 2 3 1192 300 53 0 0 chr1 79683013 79683051 -117512381 + (TAA)n Simple_repeat Simple_repeat 1 38 0 3 1192 823 72 128 73 chr1 79683074 79683238 -117512194 + B2_Mm2 SINE B2 23 195 0 3 1192 22 35 0 0 chr1 79683335 79683364 -117512068 + AT_rich Low_complexity Low_complexity 1 29 0 3 1192 423 308 111 27 chr1 79684216 79684271 -117511161 + HAL1 LINE L1 1042 1096 -1411 3 1192 192 40 0 0 chr1 79684271 79684296 -117511136 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1192 423 308 111 27 chr1 79684296 79684610 -117510822 + HAL1 LINE L1 1097 1442 -1065 3 1192 2397 132 65 0 chr1 79684629 79684999 -117510433 - ORR1B1 LTR MaLR 0 394 1 3 1192 518 271 1 24 chr1 79685032 79685174 -117510258 + MTD LTR MaLR 3 142 -277 3 1192 378 164 162 9 chr1 79685183 79685288 -117510144 + MTD LTR MaLR 299 419 0 3 1192 5844 54 19 0 chr1 79685326 79686045 -117509387 + L1Md_F2 LINE L1 4854 5586 -297 3 1192 8381 43 3 0 chr1 79686045 79687037 -117508395 + L1Md_F2 LINE L1 5587 6581 -1 3 1192 634 150 87 0 chr1 79687048 79687175 -117508257 + B1_Mus1 SINE Alu 1 138 -10 3 1192 234 156 0 0 chr1 79687463 79687508 -117507924 + T-rich Low_complexity Low_complexity 1 45 0 3 1192 408 293 50 7 chr1 79687535 79687676 -117507756 - B1F1 SINE Alu -2 147 1 3 1192 3609 150 86 11 chr1 79688071 79688713 -117506719 + RMER6C LTR ERVK 1 690 0 3 1192 939 260 52 49 chr1 79688782 79689187 -117506245 + RMER5 LTR ERV1 33 438 -96 3 1192 243 217 83 0 chr1 79689323 79689383 -117506049 + RMER5 LTR ERV1 65 129 -405 3 1192 973 139 0 0 chr1 79690515 79690666 -117504766 - B2_Mm2 SINE B2 -43 152 2 3 1192 1228 99 65 16 chr1 79690744 79690928 -117504504 - B2_Mm2 SINE B2 0 195 3 3 1192 927 96 81 0 chr1 79690966 79691102 -117504330 - B1_Mus1 SINE Alu 0 148 2 3 1192 270 0 0 0 chr1 79691160 79691190 -117504242 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1192 640 269 116 53 chr1 79691317 79691635 -117503797 + ORR1E LTR MaLR 18 355 -4 3 1193 820 176 35 7 chr1 79692145 79692288 -117503144 - B1_Mm SINE Alu 0 147 1 3 1193 1495 58 37 0 chr1 79692655 79692843 -117502589 + B2_Mm2 SINE B2 1 195 0 3 1193 189 0 0 0 chr1 79693452 79693473 -117501959 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1193 1109 79 0 0 chr1 79693473 79693612 -117501820 - B1_Mus1 SINE Alu -9 139 1 3 1193 396 293 12 91 chr1 79693800 79693965 -117501467 + RMER30 DNA MER1_type 1 152 -50 3 1193 198 0 0 0 chr1 79694110 79694132 -117501300 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1193 301 285 340 61 chr1 79694664 79695068 -117500364 - MLT1F LTR MaLR -12 536 20 3 1193 939 96 73 0 chr1 79695461 79695597 -117499835 + B1_Mus2 SINE Alu 2 147 0 3 1193 261 0 0 0 chr1 79695597 79695626 -117499806 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1193 1018 112 147 0 chr1 79695666 79695836 -117499596 - B2_Mm2 SINE B2 0 195 1 3 1193 259 246 66 0 chr1 79695899 79695960 -117499472 - ID2 SINE ID -13 70 6 3 1193 393 293 0 10 chr1 79696069 79696169 -117499263 + RSINE1 SINE B4 1 99 -66 3 1193 26 30 0 0 chr1 79696208 79696241 -117499191 + AT_rich Low_complexity Low_complexity 1 33 0 3 1193 341 252 37 0 chr1 79696760 79696867 -117498565 + ID_B1 SINE B4 110 220 -4 3 1193 297 0 0 0 chr1 79696868 79696901 -117498531 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1193 1227 96 62 0 chr1 79697885 79698063 -117497369 - B2_Mm2 SINE B2 -2 193 5 3 1193 354 296 45 36 chr1 79698127 79698239 -117497193 - PB1D7 SINE Alu -7 113 1 3 1193 210 287 69 10 chr1 79698680 79698782 -117496650 + MIRb SINE MIR 136 243 -25 3 1193 207 0 0 0 chr1 79700572 79700595 -117494837 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1193 1032 44 0 0 chr1 79700598 79700735 -117494697 - B1_Mus2 SINE Alu 0 147 11 3 1193 409 299 164 8 chr1 79703732 79703860 -117491572 + RSINE1 SINE B4 3 150 -15 3 1193 378 0 0 0 chr1 79704604 79704646 -117490786 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 3 1193 1188 61 0 0 chr1 79704766 79704913 -117490519 + B1_Mus2 SINE Alu 1 147 0 3 1193 261 83 0 0 chr1 79705397 79705433 -117489999 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1193 1193 55 7 0 chr1 79705433 79705579 -117489853 - B1_Mus1 SINE Alu 0 148 2 3 1193 388 296 26 0 chr1 79705954 79706069 -117489363 - PB1D7 SINE Alu -2 118 1 3 1193 577 269 18 40 chr1 79706885 79707110 -117488322 + ID_B1 SINE B4 2 221 -3 3 1193 208 341 42 28 chr1 79708742 79708884 -117486548 - MIR3 SINE MIR -23 185 42 3 1193 3012 102 74 36 chr1 79708949 79709640 -117485792 + RLTR13D4 LTR ERVK 1 1033 0 3 1193 719 297 64 1 chr1 79709900 79710143 -117485289 + B4A SINE B4 10 280 -12 3 1193 259 264 28 0 chr1 79710156 79710228 -117485204 + (CATA)n Simple_repeat Simple_repeat 1 74 0 3 1193 23 33 0 0 chr1 79710230 79710260 -117485172 + AT_rich Low_complexity Low_complexity 1 30 0 3 1193 252 184 0 0 chr1 79712053 79712102 -117483330 + GA-rich Low_complexity Low_complexity 4 52 0 3 1193 884 18 18 0 chr1 79712104 79712213 -117483219 + (GGAAA)n Simple_repeat Simple_repeat 4 114 0 4 1193 524 223 61 8 chr1 79713403 79713534 -117481898 + B1F SINE Alu 5 142 -7 4 1193 192 77 0 0 chr1 79714184 79714210 -117481222 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1193 200 86 29 0 chr1 79714600 79714635 -117480797 + (TATAA)n Simple_repeat Simple_repeat 4 39 0 4 1193 1267 34 0 0 chr1 79714743 79714889 -117480543 + B1_Mm SINE Alu 2 147 0 4 1193 300 53 0 0 chr1 79714889 79714927 -117480505 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1193 502 220 66 25 chr1 79714982 79715103 -117480329 - RSINE1 SINE B4 -35 130 5 4 1193 180 0 0 0 chr1 79716180 79716200 -117479232 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 1193 1193 127 39 0 chr1 79716205 79716386 -117479046 - B2_Mm1t SINE B2 -4 189 2 4 1193 1811 68 0 8 chr1 79716396 79716635 -117478797 - MusHAL1 LINE L1 -57 2655 2419 4 1193 344 269 0 0 chr1 79716757 79716850 -117478582 + MTEa LTR MaLR 287 379 0 4 1193 1229 41 7 0 chr1 79717043 79717188 -117478244 - B1_Mus2 SINE Alu -1 146 1 4 1193 1268 20 0 7 chr1 79719283 79719431 -117476001 + B1_Mm SINE Alu 1 147 0 4 1193 216 0 0 0 chr1 79719431 79719455 -117475977 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1193 252 184 0 0 chr1 79719495 79719544 -117475888 + GA-rich Low_complexity Low_complexity 4 52 0 4 1193 884 18 18 0 chr1 79719546 79719655 -117475777 + (GGAAA)n Simple_repeat Simple_repeat 4 114 0 4 1193 524 223 61 8 chr1 79720845 79720976 -117474456 + B1F SINE Alu 5 142 -7 4 1193 192 77 0 0 chr1 79721626 79721652 -117473780 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1193 200 86 29 0 chr1 79722042 79722077 -117473355 + (TATAA)n Simple_repeat Simple_repeat 4 39 0 4 1193 1267 34 0 0 chr1 79722185 79722331 -117473101 + B1_Mm SINE Alu 2 147 0 4 1193 300 53 0 0 chr1 79722331 79722369 -117473063 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1193 502 220 66 25 chr1 79722424 79722545 -117472887 - RSINE1 SINE B4 -35 130 5 4 1193 180 0 0 0 chr1 79723622 79723642 -117471790 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 1193 1193 127 39 0 chr1 79723647 79723828 -117471604 - B2_Mm1t SINE B2 -4 189 2 4 1193 1811 68 0 8 chr1 79723838 79724077 -117471355 - MusHAL1 LINE L1 -57 2655 2419 4 1193 344 269 0 0 chr1 79724199 79724292 -117471140 + MTEa LTR MaLR 287 379 0 4 1193 1229 41 7 0 chr1 79724485 79724630 -117470802 - B1_Mus2 SINE Alu -1 146 1 4 1193 204 200 0 0 chr1 79727541 79727581 -117467851 + C-rich Low_complexity Low_complexity 1 40 0 4 1193 207 0 0 0 chr1 79728126 79728149 -117467283 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1193 1204 68 0 0 chr1 79728149 79728297 -117467135 - B1_Mus1 SINE Alu 0 148 1 4 1193 328 314 85 0 chr1 79728469 79728587 -117466845 + B1F SINE Alu 22 149 0 4 1193 971 97 7 0 chr1 79728946 79729091 -117466341 + (GA)n Simple_repeat Simple_repeat 1 146 0 4 1193 240 284 21 0 chr1 79729125 79729220 -117466212 + L1MB5 LINE L1 5195 5291 -855 4 1193 333 306 0 18 chr1 79729233 79729343 -117466089 + PB1D10 SINE Alu 9 116 -1 4 1193 500 282 128 50 chr1 79729373 79729817 -117465615 + L1MB5 LINE L1 5600 6078 -96 4 1193 363 254 45 23 chr1 79731251 79731384 -117464048 + B1F2 SINE Alu 5 140 -9 4 1193 238 50 50 0 chr1 79731502 79731542 -117463890 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 4 1193 945 253 41 65 chr1 79731582 79731874 -117463558 - B4A SINE B4 -3 289 5 4 1193 384 256 0 0 chr1 79732110 79732188 -117463244 + B1F2 SINE Alu 3 80 -69 4 1193 317 319 69 0 chr1 79732494 79732610 -117462822 - RSINE1 SINE B4 -38 127 4 4 1193 216 0 0 0 chr1 79732646 79732670 -117462762 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 4 1193 183 241 18 18 chr1 79733098 79733153 -117462279 + MIRc SINE MIR 93 147 -121 4 1193 355 216 14 0 chr1 79733579 79733653 -117461779 + PB1D7 SINE Alu 40 114 -6 4 1193 238 150 429 11 chr1 79733929 79734020 -117461412 + RSINE1 SINE B4 2 130 -35 4 1193 2589 25 0 0 chr1 79734339 79734662 -117460770 - IAPEY2_LTR LTR ERVK -3 354 32 4 1193 259 77 56 37 chr1 79735847 79735901 -117459531 - B1F SINE Alu -16 133 79 4 1193 414 186 482 7 chr1 79735901 79735988 -117459444 - ID_B1 SINE B4 -16 208 1 4 1193 322 288 86 40 chr1 79736172 79736324 -117459108 + RSINE1 SINE B4 2 160 -5 4 1193 24 32 0 0 chr1 79737204 79737235 -117458197 + AT_rich Low_complexity Low_complexity 1 31 0 4 1193 260 287 11 22 chr1 79737434 79737554 -117457878 + PB1D7 SINE Alu 1 120 0 4 1193 198 0 0 0 chr1 79737558 79737580 -117457852 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1193 546 259 88 0 chr1 79737986 79738133 -117457299 + RSINE1 SINE B4 4 163 -2 4 1193 480 244 117 44 chr1 79738545 79738862 -117456570 + L1MC5 LINE L1 7316 7655 -306 4 1193 397 202 157 52 chr1 79738943 79739058 -117456374 - PB1 SINE Alu 0 127 1 4 1193 326 20 0 0 chr1 79741048 79741098 -117454334 - L1_Mus4 LINE L1 0 6636 6587 4 1193 227 83 0 0 chr1 79741098 79741134 -117454298 + L1_Mus4 LINE L1 6556 6591 -47 4 1193 3549 20 2 0 chr1 79741617 79742012 -117453420 - MTA_Mm LTR MaLR 0 396 1 4 1193 189 94 0 0 chr1 79742061 79742093 -117453339 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4 1193 1057 74 14 0 chr1 79742095 79742243 -117453189 - B2_Mm1t SINE B2 -43 150 1 4 1193 297 0 0 0 chr1 79742446 79742479 -117452953 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1193 551 252 0 0 chr1 79742499 79742614 -117452818 - RSINE1 SINE B4 -37 128 14 4 1193 289 250 11 43 chr1 79743913 79744005 -117451427 - RLTR21 LTR ERVK -45 1527 1439 4 1193 690 222 53 53 chr1 79743990 79744199 -117451233 - RLTR21 LTR ERVK -236 1336 1128 4 1193 483 18 0 0 chr1 79744199 79744255 -117451177 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1193 5792 142 62 45 chr1 79744272 79744659 -117450773 - RLTR21 LTR ERVK -334 1238 898 4 1193 1115 36 65 0 chr1 79744659 79744797 -117450635 + B1_Mus2 SINE Alu 1 147 0 4 1193 5792 131 65 47 chr1 79744797 79745660 -117449772 - RLTR21 LTR ERVK -675 897 1 4 1193 270 259 221 7 chr1 79746195 79746331 -117449101 + MLT1H LTR MaLR 385 549 0 4 1193 198 0 0 0 chr1 79748389 79748411 -117447021 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1193 195 42 0 0 chr1 79748944 79748968 -117446464 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1193 180 0 0 0 chr1 79748968 79748987 -117446445 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1193 701 306 5 23 chr1 79749220 79749434 -117445998 + ID_B1 SINE B4 15 224 0 4 1193 1060 283 68 18 chr1 79750228 79750610 -117444822 + MER68 LTR ERVL 24 424 -139 4 1193 312 27 0 0 chr1 79750872 79750909 -117444523 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1193 265 331 125 30 chr1 79750997 79751165 -117444267 - MIR SINE MIR -50 212 29 4 1193 231 36 0 0 chr1 79751169 79751197 -117444235 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1193 935 70 0 0 chr1 79751197 79751326 -117444106 - B1_Mus1 SINE Alu -11 137 9 4 1193 643 233 146 0 chr1 79751616 79751831 -117443601 + ID_B1 SINE B4 2 248 -44 4 1193 225 180 0 0 chr1 79751898 79751948 -117443484 + T-rich Low_complexity Low_complexity 1 50 0 4 1193 1576 47 5 0 chr1 79752320 79752510 -117442922 - B2_Mm1a SINE B2 0 193 3 4 1193 264 30 0 0 chr1 79752770 79752803 -117442629 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1193 424 319 35 7 chr1 79752824 79752966 -117442466 - B4A SINE B4 -146 146 1 4 1193 276 243 13 13 chr1 79753239 79753314 -117442118 + MTEb LTR MaLR 295 369 -10 4 1193 195 307 119 57 chr1 79753592 79753768 -117441664 + MER5A DNA MER1_type 1 187 -2 4 1193 548 183 29 0 chr1 79754119 79754223 -117441209 + PB1D7 SINE Alu 9 115 -5 4 1193 446 309 36 0 chr1 79754242 79754381 -117441051 + ID_B1 SINE B4 78 221 -3 4 1193 320 255 72 9 chr1 79754702 79754813 -117440619 + MIRb SINE MIR 25 142 -126 4 1193 386 323 66 45 chr1 79754829 79755072 -117440360 - MER46C DNA MER2_type -79 259 12 4 1193 243 0 0 0 chr1 79755864 79755891 -117439541 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1193 228 35 0 0 chr1 79758463 79758492 -117436940 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1193 289 194 0 0 chr1 79758606 79758668 -117436764 - Kanga1b DNA Tc2 -689 90 29 4 1193 491 289 99 19 chr1 79758902 79759114 -117436318 + MER90 LTR ERV1 347 575 0 4 1193 266 198 145 24 chr1 79759243 79759270 -117436162 + MTEa LTR MaLR 287 313 -66 4 1193 189 0 0 0 chr1 79759270 79759291 -117436141 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 4 1193 266 198 145 24 chr1 79759291 79759346 -117436086 + MTEa LTR MaLR 314 378 -1 4 1193 243 275 0 0 chr1 79759384 79759453 -117435979 + RMER15 LTR ERVL 1 69 -506 4 1193 1862 222 26 84 chr1 79759478 79760023 -117435409 + RMER15 LTR ERVL 27 539 -36 4 1193 410 239 111 72 chr1 79760946 79761126 -117434306 + RLTR23 LTR ERV1 244 430 0 4 1193 535 235 10 0 chr1 79761323 79761425 -117434007 - PB1D10 SINE Alu -14 103 1 4 1193 249 275 80 44 chr1 79761568 79761705 -117433727 - ID_B1 SINE B4 -2 222 81 4 1193 1671 215 46 24 chr1 79761868 79762278 -117433154 + MTD LTR MaLR 1 419 0 4 1193 210 318 122 15 chr1 79762317 79762448 -117432984 - L2 LINE L2 -877 2542 2398 4 1193 397 248 146 16 chr1 79762737 79762860 -117432572 + ID_B1 SINE B4 67 205 -19 4 1193 1053 260 94 28 chr1 79762872 79763224 -117432208 + MER57F LTR ERV1 28 402 -34 4 1193 1165 186 5 5 chr1 79763424 79763646 -117431786 + URR1A DNA MER1_type 5 226 0 4 1193 295 244 60 77 chr1 79763675 79763857 -117431575 - L2 LINE L2 -1193 2226 2048 4 1193 340 330 43 0 chr1 79764634 79764749 -117430683 + LTR33A LTR ERVL 82 201 -319 4 1193 378 223 28 37 chr1 79765049 79765156 -117430276 + PB1D7 SINE Alu 13 118 -2 4 1193 234 0 0 0 chr1 79765168 79765194 -117430238 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1193 21 36 0 0 chr1 79765301 79765329 -117430103 + AT_rich Low_complexity Low_complexity 1 28 0 5 1193 1258 62 84 0 chr1 79765475 79765654 -117429778 - B2_Mm2 SINE B2 -1 194 1 5 1193 1376 74 21 11 chr1 79766091 79766282 -117429150 + B2_Mm1a SINE B2 1 193 0 5 1193 776 207 7 0 chr1 79767087 79767237 -117428195 + RMER20B LTR ERVK 1 151 -476 5 1193 2541 117 29 38 chr1 79767237 79767680 -117427752 + MT2C_Mm LTR ERVL 1 439 -36 5 1193 1849 184 16 153 chr1 79767680 79768237 -117427195 + RMER20B LTR ERVK 147 627 0 5 1193 426 205 65 62 chr1 79768562 79768698 -117426734 - B3 SINE B2 -6 192 68 5 1193 715 194 16 84 chr1 79769230 79769421 -117426011 + B2_Mm2 SINE B2 10 187 -8 5 1193 225 389 13 39 chr1 79769581 79769736 -117425696 + ORR1E LTR MaLR 10 160 -199 5 1193 1247 204 150 120 chr1 79769913 79770386 -117425046 - MT2A LTR ERVL -26 575 10 5 1193 2505 132 153 0 chr1 79770552 79770969 -117424463 + RLTR28B LTR ERVL 1 481 0 5 1193 1326 186 0 12 chr1 79770994 79771250 -117424182 - RLTR24 LTR ERV1 0 529 277 5 1193 5227 41 12 6 chr1 79771252 79771892 -117423540 + L1Md_F3 LINE L1 5940 6583 -1 5 1193 204 40 0 0 chr1 79775222 79775247 -117420185 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 1193 315 126 9 34 chr1 79775260 79775328 -117420104 - B2_Mm2 SINE B2 -100 116 47 5 1193 946 79 197 7 chr1 79775359 79775511 -117419921 - B2_Mm2 SINE B2 -13 182 2 5 1193 473 210 71 56 chr1 79776357 79776483 -117418949 + B1_Mur1 SINE Alu 5 132 -17 5 1193 820 206 95 0 chr1 79776613 79776802 -117418630 - B3 SINE B2 -9 207 1 5 1193 22 35 0 0 chr1 79776860 79776889 -117418543 + AT_rich Low_complexity Low_complexity 1 29 0 5 1193 591 125 0 0 chr1 79777073 79777177 -117418255 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1193 472 222 20 0 chr1 79777280 79777379 -117418053 - B1_Mus1 SINE Alu -47 101 1 5 1193 576 271 40 0 chr1 79779100 79779251 -117416181 + B3 SINE B2 7 163 -53 5 1193 197 139 23 0 chr1 79780535 79780578 -117414854 + T-rich Low_complexity Low_complexity 2 45 0 5 1193 232 348 0 22 chr1 79781024 79781115 -117414317 + LTR73 LTR ERV1 169 257 -315 5 1193 788 149 0 14 chr1 79781229 79781372 -117414060 + URR1B DNA MER1_type 83 223 -2 5 1193 623 190 124 0 chr1 79781983 79782104 -117413328 + B1_Mur4 SINE Alu 5 140 -10 5 1193 4894 90 43 19 chr1 79782468 79783193 -117412239 + Lx LINE L1 5912 6653 -1 5 1193 23 54 0 0 chr1 79783558 79783595 -117411837 + AT_rich Low_complexity Low_complexity 1 37 0 5 1193 220 253 111 40 chr1 79783876 79783975 -117411457 + ID_B1 SINE B4 84 189 -35 5 1193 450 180 0 63 chr1 79784068 79784163 -117411269 + PB1D10 SINE Alu 27 115 -2 5 1193 1409 68 17 0 chr1 79784314 79784491 -117410941 + B2_Mm2 SINE B2 2 181 -14 5 1193 195 42 0 0 chr1 79784491 79784515 -117410917 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1193 1766 197 78 45 chr1 79785182 79785668 -117409764 + Lx9 LINE L1 5433 5970 -1674 5 1193 237 65 0 0 chr1 79785835 79785866 -117409566 + (CATA)n Simple_repeat Simple_repeat 2 32 0 5 1193 655 197 72 14 chr1 79785875 79786014 -117409418 - B1_Mus1 SINE Alu 0 148 2 5 1193 3690 185 104 10 chr1 79786040 79786318 -117409114 + Lx9 LINE L1 6753 7037 -607 5 1193 483 18 0 0 chr1 79786318 79786374 -117409058 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 5 1193 3690 185 104 10 chr1 79786374 79786770 -117408662 + Lx9 LINE L1 7038 7475 -169 5 1193 486 0 0 0 chr1 79786770 79786824 -117408608 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1193 3690 185 104 10 chr1 79786824 79786963 -117408469 + Lx9 LINE L1 7476 7642 -2 5 1193 562 245 144 6 chr1 79787012 79787172 -117408260 + ID_B1 SINE B4 4 185 -39 5 1193 362 239 16 120 chr1 79787077 79787203 -117408229 + PB1D10 SINE Alu 8 121 -27 5 1193 192 152 0 0 chr1 79788338 79788371 -117407061 + T-rich Low_complexity Low_complexity 1 33 0 5 1193 1335 286 47 48 chr1 79788587 79788832 -117406600 + MLT2B2 LTR ERVL 1 247 -268 5 1193 3004 34 11 6 chr1 79788832 79789184 -117406248 - IAPEY2_LTR LTR ERVK -3 354 1 5 1193 1335 286 47 48 chr1 79789184 79789453 -117405979 + MLT2B2 LTR ERVL 248 514 -1 5 1193 318 50 0 0 chr1 79789849 79789889 -117405543 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 1193 348 24 0 0 chr1 79789895 79789936 -117405496 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1193 629 165 17 9 chr1 79789937 79790053 -117405379 - RSINE1 SINE B4 -41 124 8 5 1193 198 0 0 0 chr1 79790543 79790565 -117404867 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1193 21 0 0 0 chr1 79790604 79790625 -117404807 + AT_rich Low_complexity Low_complexity 1 21 0 5 1193 1198 41 7 0 chr1 79790626 79790771 -117404661 - B1_Mus2 SINE Alu -1 146 1 5 1193 21 0 0 0 chr1 79790783 79790804 -117404628 + AT_rich Low_complexity Low_complexity 1 21 0 5 1193 307 324 74 26 chr1 79791730 79791920 -117403512 + MER3 DNA MER1_type 3 201 -8 5 1193 810 243 17 6 chr1 79792160 79792338 -117403094 - B3A SINE B2 -16 182 3 5 1193 28 86 0 0 chr1 79792358 79792428 -117403004 + AT_rich Low_complexity Low_complexity 1 70 0 5 1193 669 255 99 67 chr1 79792459 79792741 -117402691 + B4 SINE B4 2 292 0 5 1193 470 202 11 28 chr1 79792773 79792951 -117402481 + (CATA)n Simple_repeat Simple_repeat 4 178 0 5 1193 210 314 23 0 chr1 79793703 79793789 -117401643 + MIR SINE MIR 175 262 0 5 1193 473 296 15 7 chr1 79794576 79794712 -117400720 + MLT1B LTR MaLR 251 387 -3 5 1193 400 275 9 35 chr1 79794736 79794849 -117400583 + MER45A DNA Tip100 58 167 -11 5 1193 420 346 19 47 chr1 79795412 79795627 -117399805 + MER58A DNA MER1_type 1 209 -15 5 1193 291 304 11 32 chr1 79795654 79795671 -117399761 - ID_B1 SINE B4 -124 100 8 5 1193 347 213 0 39 chr1 79795671 79795749 -117399683 - ID4 SINE ID -1 82 8 5 1193 203 176 0 0 chr1 79795753 79795787 -117399645 + (CAT)n Simple_repeat Simple_repeat 2 35 0 5 1193 314 45 0 22 chr1 79795845 79795890 -117399542 + (TCC)n Simple_repeat Simple_repeat 2 45 0 5 1193 21 0 0 0 chr1 79796391 79796412 -117399020 + AT_rich Low_complexity Low_complexity 1 21 0 5 1193 267 231 15 0 chr1 79796505 79796570 -117398862 - MIRc SINE MIR -126 142 77 5 1193 219 232 47 47 chr1 79797039 79797125 -117398307 - MER5A DNA MER1_type -86 103 18 5 1193 293 250 0 14 chr1 79797703 79797776 -117397656 + BC1_Mm scRNA scRNA 17 88 -64 5 1193 823 245 38 14 chr1 79798423 79798634 -117396798 - B3 SINE B2 0 216 1 5 1193 243 0 0 0 chr1 79798823 79798850 -117396582 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1193 288 38 75 0 chr1 79799981 79800034 -117395398 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1193 262 315 36 9 chr1 79800062 79800174 -117395258 - L1MA9 LINE L1 -38 6274 6160 5 1193 691 252 33 19 chr1 79800180 79800390 -117395042 + MTEb LTR MaLR 167 379 0 5 1193 803 157 0 35 chr1 79800768 79800913 -117394519 - B1_Mur3 SINE Alu -1 148 9 5 1193 336 143 0 0 chr1 79801964 79802020 -117393412 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1193 266 313 48 0 chr1 79802087 79802170 -117393262 - PB1D10 SINE Alu -7 110 24 5 1193 480 319 25 6 chr1 79802637 79802795 -117392637 + B4 SINE B4 2 162 -130 5 1193 435 19 0 0 chr1 79802795 79802847 -117392585 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1193 24 0 0 0 chr1 79803424 79803448 -117391984 + AT_rich Low_complexity Low_complexity 1 24 0 5 1193 762 50 0 0 chr1 79804526 79804625 -117390807 + (TCCC)n Simple_repeat Simple_repeat 4 102 0 5 1193 275 225 302 37 chr1 79805325 79805461 -117389971 + B3A SINE B2 1 172 -26 5 1193 272 255 20 69 chr1 79805809 79805910 -117389522 + B4A SINE B4 197 292 0 5 1193 591 15 0 0 chr1 79805915 79805983 -117389449 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1193 608 289 84 38 chr1 79806260 79806523 -117388909 - MER2 DNA MER2_type -53 292 18 5 1193 210 236 0 0 chr1 79806809 79806864 -117388568 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1193 23 0 0 0 chr1 79807400 79807423 -117388009 + AT_rich Low_complexity Low_complexity 1 23 0 5 1193 747 197 135 0 chr1 79807442 79807620 -117387812 - ID_B1 SINE B4 -19 205 4 5 1193 234 0 0 0 chr1 79807713 79807739 -117387693 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1193 2128 73 3 60 chr1 79808598 79808931 -117386501 + ORR1A2 LTR MaLR 6 319 -8 5 1193 3334 127 26 4 chr1 79808935 79809481 -117385951 + ORR1A2-int LTR MaLR 1 558 -1405 5 1193 524 182 0 39 chr1 79809479 79809582 -117385850 + MT2B LTR ERVL 161 259 -342 5 1193 662 243 56 65 chr1 79810030 79810246 -117385186 - B3A SINE B2 -2 214 1 5 1193 26 30 0 0 chr1 79810746 79810779 -117384653 + AT_rich Low_complexity Low_complexity 1 33 0 5 1193 250 296 0 12 chr1 79810900 79810982 -117384450 + ID4 SINE ID 3 83 0 5 1193 737 176 12 42 chr1 79811504 79811670 -117383762 - B2_Mm2 SINE B2 -8 187 27 5 1193 262 253 188 39 chr1 79811811 79811992 -117383440 + MIR SINE MIR 49 256 -6 5 1193 244 116 0 0 chr1 79812122 79812165 -117383267 - B3 SINE B2 -173 43 1 5 1193 859 330 43 20 chr1 79812309 79812659 -117382773 + MTE2a LTR MaLR 7 364 -15 5 1193 367 283 9 45 chr1 79813585 79813696 -117381736 + PB1D7 SINE Alu 5 111 -9 5 1193 775 321 14 31 chr1 79813700 79813906 -117381526 + B4A SINE B4 1 202 -90 5 1193 2501 73 0 60 chr1 79813906 79814254 -117381178 + ORR1A2 LTR MaLR 1 327 0 5 1193 775 321 14 31 chr1 79814254 79814336 -117381096 + B4A SINE B4 203 284 -8 5 1193 435 311 116 32 chr1 79815354 79815640 -117379792 + MTE2b LTR MaLR 17 338 -41 5 1193 324 268 78 8 chr1 79816614 79816742 -117378690 - BC1_Mm scRNA scRNA -10 142 6 5 1193 415 226 44 8 chr1 79816756 79816864 -117378568 - PB1D10 SINE Alu -8 109 3 6 1193 186 103 0 0 chr1 79816891 79816920 -117378512 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 6 1193 724 284 83 45 chr1 79816977 79817243 -117378189 + B4A SINE B4 2 277 -15 6 1193 189 0 0 0 chr1 79820213 79820234 -117375198 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 6 1193 327 85 0 0 chr1 79822326 79822373 -117373059 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1193 365 230 151 23 chr1 79822488 79822706 -117372726 - L1MC5 LINE L1 -182 7779 7534 6 149 11527 10 0 0 chr1 79822750 79824721 -117370711 - L1Md_A LINE L1 0 6582 4612 6 1194 207 49 48 24 chr1 79824889 79824931 -117370501 + (CCCCCA)n Simple_repeat Simple_repeat 1 43 0 6 1194 273 226 65 47 chr1 79825044 79825151 -117370281 - L1MC5 LINE L1 -743 7218 7110 6 1194 333 0 0 0 chr1 79825177 79825214 -117370218 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1194 324 0 0 0 chr1 79825214 79825249 -117370183 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1194 1872 152 23 11 chr1 79825553 79825900 -117369532 + RLTR15 LTR ERVK 1 351 -8 6 1194 4268 46 2 2 chr1 79827778 79828296 -117367136 - L1_Mus2 LINE L1 -386 6180 5663 6 1194 2949 58 0 5 chr1 79828296 79828715 -117366717 + L1_Mus2 LINE L1 6185 6566 0 6 1194 375 291 55 0 chr1 79828860 79828970 -117366462 - RSINE1 SINE B4 -20 145 30 6 1194 606 225 54 8 chr1 79830832 79830962 -117364470 + B1_Mur1 SINE Alu 2 137 -12 6 1194 554 278 43 0 chr1 79831023 79831185 -117364247 + MLT1A0 LTR MaLR 197 365 0 6 1194 306 0 0 0 chr1 79832348 79832382 -117363050 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1194 385 68 0 33 chr1 79832693 79832754 -117362678 + PB1D9 SINE Alu 1 59 -61 6 1194 337 162 0 0 chr1 79832755 79832906 -117362526 + GA-rich Low_complexity Low_complexity 1 151 0 6 1194 725 42 0 0 chr1 79832908 79833003 -117362429 + B1_Mm SINE Alu 42 136 -11 6 1194 1800 120 12 73 chr1 79833860 79834202 -117361230 - ORR1A4 LTR MaLR -8 321 1 6 1194 25 0 0 0 chr1 79834213 79834238 -117361194 + AT_rich Low_complexity Low_complexity 1 25 0 6 1194 926 269 62 42 chr1 79834273 79834533 -117360899 + B4 SINE B4 1 265 -27 6 1194 543 16 0 0 chr1 79834537 79834601 -117360831 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1194 249 312 35 35 chr1 79834633 79834746 -117360686 + L1MD2 LINE L1 6174 6286 -73 6 1194 1014 215 5 42 chr1 79834818 79835032 -117360400 - B3 SINE B2 0 216 11 6 1194 3485 23 2 5 chr1 79835962 79836359 -117359073 + MTA_Mm LTR MaLR 1 396 0 6 1194 547 213 62 37 chr1 79836964 79837125 -117358307 + Lx5 LINE L1 6886 7050 0 6 1194 321 26 0 0 chr1 79838634 79838672 -117356760 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 6 1194 430 261 72 0 chr1 79838675 79838786 -117356646 - B1F2 SINE Alu -28 121 3 6 1194 342 257 28 19 chr1 79838868 79838975 -117356457 - B1F2 SINE Alu 0 149 42 6 1194 262 275 24 24 chr1 79839846 79839928 -117355504 + ID4 SINE ID 2 83 0 6 1194 1680 168 79 28 chr1 79840037 79840393 -117355039 + ORR1D1 LTR MaLR 1 374 0 6 1194 180 0 0 0 chr1 79840865 79840885 -117354547 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1194 2091 167 62 22 chr1 79841925 79842330 -117353102 + MTC LTR MaLR 1 421 0 6 1194 248 376 99 12 chr1 79842336 79842508 -117352924 + MLT1J2 LTR MaLR 31 217 -231 6 1194 378 0 0 0 chr1 79843144 79843186 -117352246 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1194 757 317 61 8 chr1 79844164 79844425 -117351007 - B4A SINE B4 -17 275 1 6 1194 251 263 87 36 chr1 79845005 79845143 -117350289 - MIRm SINE MIR -128 148 4 6 1194 486 283 92 35 chr1 79846222 79846449 -117348983 + B4A SINE B4 2 241 -51 6 1194 21 0 0 0 chr1 79846969 79846990 -117348442 + AT_rich Low_complexity Low_complexity 1 21 0 6 1194 192 40 0 0 chr1 79848536 79848561 -117346871 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1194 916 228 36 94 chr1 79849971 79850247 -117345185 + B4 SINE B4 29 288 -4 6 1194 948 33 0 0 chr1 79850517 79850637 -117344795 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 1194 1048 168 10 53 chr1 79851895 79852102 -117343330 + URR1A DNA MER1_type 2 199 -27 6 1194 597 254 22 78 chr1 79852155 79852334 -117343098 + B4 SINE B4 124 292 0 6 1194 324 0 0 0 chr1 79853407 79853443 -117341989 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1194 353 276 102 28 chr1 79853443 79853551 -117341881 - B1F1 SINE Alu -32 117 2 6 1194 234 0 0 0 chr1 79854053 79854079 -117341353 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1194 22 0 0 0 chr1 79855212 79855234 -117340198 + GC_rich Low_complexity Low_complexity 1 22 0 6 1194 193 104 83 0 chr1 79855251 79855299 -117340133 + (CCCCG)n Simple_repeat Simple_repeat 1 52 0 6 1194 282 29 0 0 chr1 79856151 79856186 -117339246 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1194 251 250 0 0 chr1 79856226 79856286 -117339146 + ID4 SINE ID 1 60 -23 6 1194 1128 164 44 53 chr1 79856336 79856562 -117338870 - URR1B DNA MER1_type 0 225 2 6 1194 1308 170 9 4 chr1 79856933 79857158 -117338274 + URR1A DNA MER1_type 1 226 0 6 1194 293 168 43 43 chr1 79859468 79859630 -117335802 + (TATATG)n Simple_repeat Simple_repeat 4 165 0 6 1194 840 288 18 0 chr1 79859755 79859974 -117335458 - MTEb LTR MaLR -8 371 149 6 1194 4077 30 2 2 chr1 79860515 79861045 -117334387 - MT-int LTR MaLR -73 1025 496 6 1194 288 326 103 16 chr1 79861260 79861444 -117333988 - MLT1H LTR MaLR -266 283 84 6 1194 218 227 0 13 chr1 79861607 79861683 -117333749 + GA-rich Low_complexity Low_complexity 3 77 0 6 1194 344 282 68 8 chr1 79862005 79862137 -117333295 - MLT1B LTR MaLR -232 158 19 6 1194 233 310 44 73 chr1 79862579 79862717 -117332715 + MIR SINE MIR 19 150 -118 6 1194 663 136 0 0 chr1 79862719 79862829 -117332603 + (GAA)n Simple_repeat Simple_repeat 1 110 0 6 1194 387 0 0 0 chr1 79862880 79862923 -117332509 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6 1194 328 241 12 0 chr1 79862995 79863078 -117332354 + MLT1A0 LTR MaLR 3 86 -279 6 1194 665 201 104 0 chr1 79863078 79863212 -117332220 + B1_Mur4 SINE Alu 2 149 -1 6 1194 780 282 24 83 chr1 79863274 79863564 -117331868 + MLT1A0 LTR MaLR 87 359 -6 6 1194 199 394 35 0 chr1 79864794 79864964 -117330468 + MIRb SINE MIR 26 201 -67 6 1194 212 143 0 23 chr1 79865743 79865786 -117329646 + CT-rich Low_complexity Low_complexity 3 44 0 6 1194 255 296 89 17 chr1 79865858 79866008 -117329424 + MIR SINE MIR 18 190 -78 6 1194 257 258 73 88 chr1 79866536 79866672 -117328760 - B3A SINE B2 -1 197 64 6 1194 809 271 86 51 chr1 79866879 79867288 -117328144 - L1MD3 LINE L1 -180 7815 7393 6 1194 483 306 50 21 chr1 79867436 79867676 -117327756 - Lx9 LINE L1 -162 7482 7236 6 1194 526 282 107 81 chr1 79867742 79868136 -117327296 - L1MD3 LINE L1 -877 7118 6715 6 1194 300 182 66 101 chr1 79868340 79868461 -117326971 - MTEa LTR MaLR -173 206 88 6 1194 227 369 10 0 chr1 79868903 79869006 -117326426 - MLT2B3 LTR ERVL -448 106 3 6 1194 760 226 58 11 chr1 79870259 79870447 -117324985 - B3 SINE B2 -19 197 1 6 1194 213 194 129 0 chr1 79872250 79872312 -117323120 + L3b LINE CR1 142 211 -271 6 1194 580 221 82 60 chr1 79872359 79872542 -117322890 + B3A SINE B2 11 197 -1 6 1194 624 196 29 50 chr1 79872639 79872779 -117322653 + B1_Mur3 SINE Alu 2 138 -11 6 1194 519 196 7 15 chr1 79872781 79872916 -117322516 + G-rich Low_complexity Low_complexity 6 139 0 6 1194 877 119 0 13 chr1 79874210 79874363 -117321069 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 6 1194 206 312 16 0 chr1 79874484 79874548 -117320884 + GA-rich Low_complexity Low_complexity 1 65 0 6 1194 396 240 149 0 chr1 79875452 79875573 -117319859 - B1F2 SINE Alu -2 147 9 6 1194 361 236 145 7 chr1 79876023 79876168 -117319264 + L1MA4 LINE L1 5720 5884 -416 6 1194 279 173 0 0 chr1 79877016 79877068 -117318364 + GA-rich Low_complexity Low_complexity 1 52 0 6 1194 647 248 0 0 chr1 79877771 79877912 -117317520 + B3A SINE B2 7 147 -51 6 1194 422 114 14 0 chr1 79877958 79878028 -117317404 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1194 246 271 0 0 chr1 79878027 79878123 -117317309 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1194 697 308 61 52 chr1 79878201 79878530 -117316902 - MER44A DNA MER2_type -1 338 7 6 1194 1174 75 0 0 chr1 79878709 79878856 -117316576 - B1_Mm SINE Alu 0 147 1 6 1194 253 306 86 23 chr1 79879388 79879562 -117315870 - L2 LINE L2 -416 3003 2819 6 1194 992 119 0 6 chr1 79880045 79880205 -117315227 + (TTC)n Simple_repeat Simple_repeat 3 161 0 6 1194 1028 92 27 70 chr1 79880207 79880394 -117315038 - B2_Mm2 SINE B2 -15 180 2 6 1194 44 0 0 0 chr1 79880938 79880982 -117314450 + AT_rich Low_complexity Low_complexity 1 44 0 6 1194 378 401 46 28 chr1 79881780 79882065 -117313367 - LTR16A LTR ERVL -15 436 147 6 1194 303 366 100 12 chr1 79882515 79882764 -117312668 - ERVL-E-int LTR ERVL -615 5052 4782 6 1194 1862 178 24 40 chr1 79882851 79883231 -117312201 + ORR1D1 LTR MaLR 1 374 0 6 1194 232 337 102 64 chr1 79883755 79883942 -117311490 - LTR16A LTR ERVL -207 244 51 6 1194 274 292 13 53 chr1 79884302 79884378 -117311054 - MamSINE1 SINE tRNA -199 91 19 6 1194 1940 179 6 8 chr1 79884707 79885067 -117310365 - ORR1B2 LTR MaLR -8 359 1 6 1194 245 179 11 143 chr1 79885444 79885535 -117309897 + PB1D7 SINE Alu 40 118 -2 6 1194 384 203 0 0 chr1 79885538 79885607 -117309825 + ID4 SINE ID 1 69 -14 6 1194 531 0 0 0 chr1 79885961 79886020 -117309412 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1194 288 53 0 0 chr1 79886020 79886058 -117309374 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1194 255 360 90 52 chr1 79886058 79886404 -117309028 + MLT2B3 LTR ERVL 94 452 -102 7 1194 2207 75 63 0 chr1 79888946 79889264 -117306168 - ORR1A1 LTR MaLR -8 338 1 7 1194 242 263 0 10 chr1 79889413 79889509 -117305923 + GA-rich Low_complexity Low_complexity 1 95 0 7 1194 207 0 0 0 chr1 79889509 79889532 -117305900 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 7 1194 199 72 23 23 chr1 79889895 79889938 -117305494 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7 1194 278 115 0 19 chr1 79890016 79890069 -117305363 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1194 22 0 0 0 chr1 79891044 79891066 -117304366 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 932 236 79 28 chr1 79891963 79892216 -117303216 + B4 SINE B4 7 272 -20 7 1194 390 147 0 0 chr1 79892244 79892312 -117303120 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1194 233 298 52 22 chr1 79893203 79893306 -117302126 - MIRb SINE MIR -114 162 51 7 1194 434 321 26 159 chr1 79893640 79894121 -117301311 + MLT1B LTR MaLR 47 466 -1 7 1194 211 290 0 0 chr1 79894233 79894295 -117301137 + (TATG)n Simple_repeat Simple_repeat 3 64 0 7 1194 421 299 36 43 chr1 79894381 79894521 -117300911 - B4A SINE B4 -153 139 1 7 1194 306 0 0 0 chr1 79895546 79895580 -117299852 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1194 546 57 0 0 chr1 79895580 79895649 -117299783 + (GA)n Simple_repeat Simple_repeat 2 71 0 7 1194 504 287 57 6 chr1 79895743 79895901 -117299531 - MLT1A LTR MaLR -17 357 192 7 1194 474 108 0 0 chr1 79895920 79895994 -117299438 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1194 281 279 11 11 chr1 79896303 79896390 -117299042 + CT-rich Low_complexity Low_complexity 1 87 0 7 1194 708 12 0 0 chr1 79896633 79896714 -117298718 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 7 1194 777 307 96 45 chr1 79896765 79897161 -117298271 - MLT1E3 LTR MaLR -70 554 139 7 1194 279 54 0 0 chr1 79897940 79897977 -117297455 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1194 687 168 229 33 chr1 79898795 79899035 -117296397 + RMER20B LTR ERVK 127 413 -214 7 1194 268 258 19 76 chr1 79899052 79899157 -117296275 + RMER20B LTR ERVK 493 591 -36 7 1194 26 0 0 0 chr1 79900330 79900356 -117295076 + AT_rich Low_complexity Low_complexity 1 26 0 7 1194 279 120 160 0 chr1 79900836 79900886 -117294546 + ID4_ SINE ID 13 70 -13 7 1194 405 102 0 0 chr1 79900886 79900945 -117294487 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1194 198 0 0 0 chr1 79901540 79901562 -117293870 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1194 479 17 17 0 chr1 79901734 79901794 -117293638 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 7 1194 353 155 0 0 chr1 79901795 79901853 -117293579 + MTE2a LTR MaLR 8 65 -314 7 1194 271 155 54 40 chr1 79901861 79901935 -117293497 + RMER15 LTR ERVL 1 75 -500 7 1194 1996 178 159 23 chr1 79901965 79902448 -117292984 + RMER15 LTR ERVL 27 575 0 7 1194 797 251 83 28 chr1 79902449 79902666 -117292766 + MTE2a LTR MaLR 77 305 -74 7 1194 1481 264 109 7 chr1 79902673 79903112 -117292320 - ERVL-B4-int LTR ERVL -1764 3950 3467 7 1194 4098 291 78 29 chr1 79903200 79904692 -117290740 - ERVL-B4-int LTR ERVL -2413 3301 1736 7 1194 571 169 16 0 chr1 79904727 79904851 -117290581 + CT-rich Low_complexity Low_complexity 2 127 0 7 1194 346 270 61 80 chr1 79904853 79904874 -117290558 - ERVL-B4-int LTR ERVL -3993 1721 1704 7 1194 1025 103 0 20 chr1 79904874 79905023 -117290409 - B1_Mm SINE Alu -1 146 1 7 1194 346 270 61 80 chr1 79905023 79905214 -117290218 - ERVL-B4-int LTR ERVL -4011 1703 1513 7 1194 449 356 21 5 chr1 79905209 79905398 -117290034 - ERVL-B4-int LTR ERVL -5114 600 409 7 1194 256 282 35 12 chr1 79905415 79905501 -117289931 + PB1D10 SINE Alu 23 110 -7 7 1194 1088 269 50 15 chr1 79905557 79905897 -117289535 - ERVL-B4-int LTR ERVL -5362 352 1 7 1194 323 219 37 0 chr1 79906183 79906265 -117289167 - MLT2B4 LTR ERVL -469 87 3 7 1194 581 257 221 82 chr1 79906378 79906794 -117288638 + MLT1E1A LTR MaLR 180 653 0 7 1194 539 296 8 0 chr1 79906846 79906971 -117288461 + ID_B1 SINE B4 83 208 -16 7 1194 1467 279 73 22 chr1 79907341 79907928 -117287504 - Lx7 LINE L1 -1291 6405 5789 7 1194 1959 279 202 26 chr1 79907968 79908044 -117287388 + Lx7 LINE L1 6465 6537 -1159 7 1194 2886 31 30 30 chr1 79908044 79908409 -117287023 - RLTR10B2 LTR ERVK 0 365 1 7 1194 1959 279 202 26 chr1 79908409 79909061 -117286371 + Lx7 LINE L1 6538 7321 -375 7 1194 417 20 0 0 chr1 79909126 79909176 -117286256 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1194 225 94 0 0 chr1 79911682 79911714 -117283718 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1194 448 320 43 22 chr1 79911906 79912091 -117283341 - MLT1H LTR MaLR -301 248 60 7 1194 215 190 220 17 chr1 79913016 79913075 -117282357 - L2a LINE L2 -20 3406 3336 7 1194 215 106 0 41 chr1 79913272 79913321 -117282111 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 7 1194 473 233 8 41 chr1 79913397 79913518 -117281914 + MTE2b LTR MaLR 1 117 -262 7 1194 253 314 9 29 chr1 79913562 79913667 -117281765 + MTE2b LTR MaLR 312 414 -5 7 1194 307 250 0 0 chr1 79913714 79913782 -117281650 - MLT1H LTR MaLR -306 68 1 7 1194 672 13 0 0 chr1 79913910 79913987 -117281445 + (TTC)n Simple_repeat Simple_repeat 2 78 0 7 1194 702 264 63 10 chr1 79915479 79915554 -117279878 + B4 SINE B4 1 80 -212 7 1194 378 0 0 0 chr1 79915554 79915596 -117279836 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1194 702 264 63 10 chr1 79915596 79915727 -117279705 + B4 SINE B4 81 217 -75 7 1194 210 118 0 0 chr1 79915775 79915809 -117279623 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1194 401 215 0 7 chr1 79915809 79915954 -117279478 + GA-rich Low_complexity Low_complexity 1 144 0 7 1194 2716 191 68 15 chr1 79916036 79916169 -117279263 - Lx9 LINE L1 -1 7643 7480 7 1194 465 90 0 0 chr1 79916169 79916236 -117279196 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1194 2716 191 68 15 chr1 79916236 79916316 -117279116 - Lx9 LINE L1 -165 7479 7401 7 1194 2516 90 12 0 chr1 79916316 79916639 -117278793 + ORR1A2 LTR MaLR 1 327 0 7 1194 2716 191 68 15 chr1 79916639 79917010 -117278422 - Lx9 LINE L1 -244 7400 7028 7 1194 305 190 0 23 chr1 79917646 79917732 -117277700 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 7 1194 212 309 0 29 chr1 79918771 79918841 -117276591 + T-rich Low_complexity Low_complexity 5 72 0 7 1194 472 262 75 85 chr1 79920313 79920513 -117274919 + B3A SINE B2 1 198 0 7 1194 416 265 60 93 chr1 79920901 79921117 -117274315 + MLT1A1 LTR MaLR 5 213 -195 7 1194 275 260 55 46 chr1 79921143 79921252 -117274180 + MLT1A1 LTR MaLR 299 408 0 7 1194 503 202 96 84 chr1 79921885 79922063 -117273369 - B3A SINE B2 -18 180 1 7 1194 228 135 0 0 chr1 79922068 79922105 -117273327 + (TTA)n Simple_repeat Simple_repeat 1 37 0 7 1194 329 299 117 22 chr1 79922140 79922277 -117273155 - RSINE1 SINE B4 -14 151 2 7 1194 215 337 82 29 chr1 79923589 79923760 -117271672 + MIRc SINE MIR 83 262 -6 7 1194 1374 130 42 0 chr1 79924149 79924365 -117271067 + URR1A DNA MER1_type 2 226 0 7 1194 270 289 24 0 chr1 79925467 79925550 -117269882 + MLT1A1 LTR MaLR 31 115 -293 7 1194 412 305 15 30 chr1 79926135 79926267 -117269165 + B3 SINE B2 74 203 -13 7 1194 276 258 65 43 chr1 79926738 79926876 -117268556 + Lx9 LINE L1 7504 7644 0 7 1194 398 275 0 24 chr1 79927365 79927488 -117267944 + Lx8 LINE L1 7353 7472 -1 7 1194 2109 63 18 4 chr1 79927942 79928214 -117267218 - L1_Mus1 LINE L1 0 6567 6292 7 1194 818 38 9 9 chr1 79928214 79928320 -117267112 + L1VL1 LINE L1 537 642 -5780 7 1194 236 100 0 24 chr1 79928320 79928361 -117267071 + (TTTTC)n Simple_repeat Simple_repeat 5 44 0 7 1194 684 203 0 0 chr1 79928362 79928485 -117266947 - B1_Mus2 SINE Alu -6 141 19 7 1194 1118 115 178 0 chr1 79928634 79928825 -117266607 + URR1A DNA MER1_type 2 226 0 7 1194 181 268 0 0 chr1 79929559 79929600 -117265832 - MIRc SINE MIR -141 127 87 7 1194 2505 157 69 45 chr1 79930514 79931008 -117264424 + RMER1C Other Other 820 1325 -17 7 1194 186 0 28 56 chr1 79931863 79931899 -117263533 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 7 1194 2861 27 0 48 chr1 79933653 79934007 -117261425 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1194 57425 17 16 1 chr1 79934007 79940381 -117255051 + IAPEz-int LTR ERVK 8 6481 0 7 1194 2874 24 0 48 chr1 79940381 79940735 -117254697 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1194 314 232 42 10 chr1 79940880 79940976 -117254456 - MTEa LTR MaLR -5 374 276 7 1194 274 294 6 40 chr1 79941067 79941227 -117254205 - MTEa LTR MaLR -167 192 36 7 1194 232 158 0 34 chr1 79941743 79941802 -117253630 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 7 1194 395 284 85 18 chr1 79941906 79942071 -117253361 + L1M5 LINE L1 5407 5582 -542 7 1194 381 287 205 0 chr1 79942133 79942255 -117253177 - RSINE1 SINE B4 -18 147 1 7 1194 589 314 8 68 chr1 79942269 79942505 -117252927 - ID_B1 SINE B4 -2 222 1 7 1194 350 169 104 0 chr1 79942949 79943026 -117252406 - Tigger7 DNA MER2_type -2093 398 314 7 1194 1410 56 0 0 chr1 79943036 79943216 -117252216 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1194 1004 293 65 31 chr1 79944109 79944430 -117251002 + MLT1A0 LTR MaLR 1 332 -33 7 1194 1217 225 138 3 chr1 79944639 79944965 -117250467 - ORR1D2 LTR MaLR 0 370 1 7 1194 269 0 0 0 chr1 79945004 79945043 -117250389 - L1Md_T LINE L1 0 6582 6544 7 1194 2381 143 41 122 chr1 79946264 79946681 -117248751 - RMER6C LTR ERVK 0 690 331 7 1194 626 0 14 0 chr1 79946681 79946755 -117248677 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1194 2381 128 352 106 chr1 79946755 79947001 -117248431 - RMER6C LTR ERVK -360 330 1 7 1194 520 309 95 15 chr1 79948100 79948363 -117247069 - MLT1F1 LTR MaLR 0 569 286 7 1194 3128 71 13 0 chr1 79948397 79948792 -117246640 + MTB LTR MaLR 1 400 0 7 1194 799 196 202 0 chr1 79949202 79949375 -117246057 + B3 SINE B2 4 211 -5 7 1194 849 87 24 0 chr1 79949844 79949971 -117245461 - B2_Mm2 SINE B2 0 195 66 7 1194 827 224 42 14 chr1 79949971 79950177 -117245255 - B3A SINE B2 0 195 2 7 1194 198 167 0 0 chr1 79950494 79950530 -117244902 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1194 255 228 25 25 chr1 79950730 79950811 -117244621 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 7 1194 616 261 23 56 chr1 79950860 79951075 -117244357 - L1MC1 LINE L1 -97 6236 6029 7 1194 442 330 139 45 chr1 79951980 79952332 -117243100 + MLT1J LTR MaLR 120 504 -8 7 1194 535 247 123 27 chr1 79952735 79952922 -117242510 + B4A SINE B4 2 206 -86 7 1194 378 0 0 0 chr1 79953005 79953047 -117242385 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1195 653 188 13 83 chr1 79956090 79956247 -117239185 + B1_Mus2 SINE Alu 1 146 -1 8 1195 234 0 0 0 chr1 79956343 79956369 -117239063 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 8 1195 287 319 22 0 chr1 79956388 79956479 -117238953 - RSINE1 SINE B4 -15 150 58 8 1195 2981 43 52 0 chr1 79956572 79956941 -117238491 - RLTR10 LTR ERVK -2 388 1 8 1195 325 214 179 0 chr1 79957124 79957208 -117238224 + B1F SINE Alu 17 115 -34 8 1195 438 248 29 58 chr1 79957511 79957648 -117237784 - B1F SINE Alu -1 148 16 8 1195 1315 101 11 6 chr1 79957661 79957840 -117237592 + B2_Mm2 SINE B2 2 181 -14 8 1195 4489 14 2 0 chr1 79958336 79958828 -117236604 + MT2_Mm LTR ERVL 1 493 0 8 1195 41423 16 14 0 chr1 79958828 79964115 -117231317 + MERVL-int LTR ERVL 1 5360 -125 8 1195 362 167 46 35 chr1 79964115 79964202 -117231230 + ORR1A3-int LTR MaLR 553 640 -1323 8 1195 321 0 0 0 chr1 79964202 79964240 -117231192 + MERVL-int LTR ERVL 5448 5485 0 8 1195 4489 14 2 0 chr1 79964240 79964732 -117230700 + MT2_Mm LTR ERVL 1 493 0 8 1195 36881 48 7 5 chr1 79965262 79968908 -117226524 - L1Md_F3 LINE L1 0 6584 2961 8 1195 4987 34 2 0 chr1 79968908 79969491 -117225941 - L1Md_T LINE L1 0 6582 5999 8 1195 36881 82 9 4 chr1 79969491 79971995 -117223437 - L1Md_F3 LINE L1 -2923 2960 453 8 1195 613 334 121 33 chr1 79971999 79972513 -117222919 + L2 LINE L2 275 833 -2586 8 1195 1064 255 111 15 chr1 79972572 79972914 -117222518 - MTEb LTR MaLR -4 375 1 8 1195 652 292 164 10 chr1 79973023 79973407 -117222025 - MLT1D LTR MaLR 0 505 63 8 1195 1871 278 80 36 chr1 79973642 79974332 -117221100 - Lx8 LINE L1 -528 6945 6226 8 1195 252 246 0 0 chr1 79975594 79975663 -117219769 - Lx7 LINE L1 -16 7680 7612 8 1195 880 269 24 12 chr1 79975776 79976024 -117219408 - Lx7 LINE L1 -371 7325 7075 8 1195 2414 285 73 27 chr1 79976228 79977092 -117218340 + Lx8 LINE L1 6060 6963 -510 8 1195 1027 240 111 45 chr1 79977101 79977433 -117217999 + Lx8 LINE L1 7120 7473 0 8 1195 982 110 119 24 chr1 79977435 79977603 -117217829 - B2_Mm2 SINE B2 -9 186 3 8 1195 198 0 0 0 chr1 79977630 79977652 -117217780 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1195 447 321 96 20 chr1 79978017 79978268 -117217164 + B4A SINE B4 5 274 -18 8 1195 215 290 0 16 chr1 79978314 79978377 -117217055 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1195 23 0 0 0 chr1 79978450 79978473 -117216959 + AT_rich Low_complexity Low_complexity 1 23 0 8 1195 182 225 12 123 chr1 79978518 79978599 -117216833 - MIR SINE MIR -110 152 81 8 1195 3551 96 4 8 chr1 79978645 79979147 -117216285 + L1_Mus3 LINE L1 6139 6638 0 8 1195 1614 129 14 84 chr1 79979678 79980024 -117215408 + RLTRETN_Mm LTR ERVK 1 322 0 8 1195 21 36 0 0 chr1 79980881 79980909 -117214523 + AT_rich Low_complexity Low_complexity 1 28 0 8 1195 306 350 41 20 chr1 79980972 79981118 -117214314 - MER119 DNA MER1_type -429 154 6 8 1195 531 302 101 8 chr1 79981335 79981592 -117213840 + B4A SINE B4 3 283 -9 8 1195 284 239 33 33 chr1 79981689 79981780 -117213652 - L1ME3 LINE L1 -20 6142 6052 8 1195 505 257 19 44 chr1 79981787 79981946 -117213486 + Lx9 LINE L1 6849 7003 -641 8 1195 330 256 34 90 chr1 79981951 79982129 -117213303 + L1MD3 LINE L1 7836 7985 -10 8 1195 207 0 0 0 chr1 79982146 79982169 -117213263 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1195 280 277 11 67 chr1 79982275 79982364 -117213068 - ID_B1 SINE B4 -8 216 133 8 1195 435 286 177 0 chr1 79982439 79982586 -117212846 - B3A SINE B2 -24 174 2 8 1195 284 136 100 57 chr1 79982610 79982680 -117212752 - ID SINE ID -150 74 2 8 1195 3505 35 0 0 chr1 79982843 79983239 -117212193 + MTA_Mm LTR MaLR 1 396 0 8 1195 2881 127 42 27 chr1 79983367 79983844 -117211588 + Lx LINE L1 6164 6647 -7 8 1195 291 114 0 0 chr1 79983864 79983908 -117211524 + (CAA)n Simple_repeat Simple_repeat 2 45 0 8 1195 276 30 0 0 chr1 79984289 79984322 -117211110 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 8 1195 403 310 180 24 chr1 79984975 79985343 -117210089 + Lx8 LINE L1 7025 7473 0 8 1195 1109 97 6 0 chr1 79986042 79986207 -117209225 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 8 1195 1205 29 0 0 chr1 79986209 79986349 -117209083 - B1_Mm SINE Alu -6 141 2 8 1195 3887 273 44 25 chr1 79986593 79987749 -117207683 + Lx8 LINE L1 6145 7322 -151 8 1195 264 30 0 0 chr1 79987749 79987782 -117207650 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1195 561 30 0 0 chr1 79987782 79987848 -117207584 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 1195 247 302 93 9 chr1 79988314 79988421 -117207011 - LTR50 LTR ERVL -290 505 390 8 1195 255 217 58 0 chr1 79988431 79988500 -117206932 - MTEb LTR MaLR 0 379 307 8 1195 230 343 0 0 chr1 79988764 79988834 -117206598 - MLT1A1 LTR MaLR -285 123 54 8 1195 1709 171 73 73 chr1 79989000 79989384 -117206048 + ORR1C2 LTR MaLR 1 384 0 8 1195 624 261 67 43 chr1 79989564 79989772 -117205660 - MER20 DNA MER1_type -6 213 1 8 1195 217 244 40 29 chr1 79991168 79991341 -117204091 + (TGAG)n Simple_repeat Simple_repeat 3 177 0 8 1195 312 125 41 14 chr1 79991505 79991578 -117203854 + GA-rich Low_complexity Low_complexity 5 79 0 8 1195 699 281 79 15 chr1 79991721 79991988 -117203444 - MLT1B LTR MaLR -104 286 3 8 1195 384 260 48 9 chr1 79993195 79993300 -117202132 - PB1D10 SINE Alu -7 110 2 8 1195 633 286 44 0 chr1 79993636 79993818 -117201614 + Lx8 LINE L1 6896 7085 -388 8 1195 396 274 73 0 chr1 79994285 79994409 -117201023 - MLT1A0 LTR MaLR 0 365 233 8 1195 190 256 0 0 chr1 79994590 79994629 -117200803 + L2b LINE L2 3304 3342 -33 8 1195 999 247 111 15 chr1 79994792 79995117 -117200315 + ORR1E LTR MaLR 1 356 -3 8 1195 239 316 67 25 chr1 79996483 79996603 -117198829 + MIR SINE MIR 38 162 -100 8 1195 21 0 0 0 chr1 79997617 79997638 -117197794 + AT_rich Low_complexity Low_complexity 1 21 0 8 1195 598 306 50 25 chr1 79997645 79997846 -117197586 - B3 SINE B2 -5 211 6 8 1195 225 0 0 0 chr1 79998223 79998248 -117197184 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 8 1195 8990 12 0 0 chr1 79998248 80000000 -117195432 - L1Md_A LINE L1 0 6582 4943 8 1195 33202 10 2 8 chr1 80000000 80004768 -117190664 - L1Md_A LINE L1 -941 4942 209 1 1195 1169 62 7 0 chr1 80004768 80004914 -117190518 - B1_Mus2 SINE Alu 0 147 1 2 1195 648 144 144 0 chr1 80005972 80006090 -117189342 + URR1B DNA MER1_type 1 135 -90 3 1195 523 179 0 0 chr1 80006506 80006601 -117188831 + URR1B DNA MER1_type 131 225 0 3 1195 308 43 0 21 chr1 80006649 80006696 -117188736 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1195 21 36 0 0 chr1 80007934 80007962 -117187470 + AT_rich Low_complexity Low_complexity 1 28 0 5 1195 350 328 137 10 chr1 80008149 80008346 -117187086 - MLT1A0 LTR MaLR -12 353 132 6 1195 384 187 62 0 chr1 80010150 80010252 -117185180 - B1_Mur3 SINE Alu 0 149 1 7 1195 587 235 152 5 chr1 80010282 80010466 -117184966 - B3 SINE B2 -5 211 1 8 1195 219 368 123 0 chr1 80010539 80010702 -117184730 + MIRb SINE MIR 54 236 -32 9 1195 270 320 106 63 chr1 80012036 80012546 -117182886 - L2 LINE L2 -705 2714 2183 1 1195 211 253 10 10 chr1 80012698 80012794 -117182638 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 1195 414 0 0 0 chr1 80014278 80014324 -117181108 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 1 1195 1080 109 18 0 chr1 80014389 80014554 -117180878 - B2_Mm2 SINE B2 -26 169 2 1 1195 281 242 0 0 chr1 80015699 80015765 -117179667 - ID4_ SINE ID -13 70 5 1 1195 354 45 0 0 chr1 80016745 80016789 -117178643 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1 1195 669 332 85 37 chr1 80017153 80017600 -117177832 - MLT1H1 LTR MaLR -32 523 68 1 1195 330 286 0 0 chr1 80019093 80019177 -117176255 - PB1D10 SINE Alu -10 107 24 1 1195 181 316 63 0 chr1 80019225 80019304 -117176128 + MIR SINE MIR 47 130 -132 1 1195 1716 42 0 5 chr1 80019359 80019577 -117175855 + L1Md_F2 LINE L1 6366 6582 0 1 1195 254 345 13 46 chr1 80019826 80019978 -117175454 + MIR SINE MIR 11 157 -105 2 1195 305 324 14 42 chr1 80020135 80020277 -117175155 + MER45A DNA Tip100 40 177 -1 2 1195 252 301 131 91 chr1 80020497 80020848 -117174584 + MLT1A0 LTR MaLR 1 365 0 2 1195 1055 300 81 15 chr1 80020850 80021182 -117174250 + ORR1E LTR MaLR 1 354 -5 2 1195 273 320 32 88 chr1 80022158 80022374 -117173058 + L2a LINE L2 3223 3426 0 2 1195 526 321 10 10 chr1 80024710 80024908 -117170524 - B3A SINE B2 0 198 1 2 1195 325 350 35 7 chr1 80025163 80025307 -117170125 + MLT1A LTR MaLR 227 374 0 2 1195 246 343 14 0 chr1 80025805 80025875 -117169557 - MLT1G3 LTR MaLR -176 419 349 2 1195 423 0 0 0 chr1 80026644 80026691 -117168741 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1195 568 335 116 18 chr1 80026768 80027209 -117168223 - L2a LINE L2 -5 3421 2938 2 1195 261 0 0 0 chr1 80027304 80027333 -117168099 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1195 360 0 0 0 chr1 80027334 80027374 -117168058 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1195 204 235 39 0 chr1 80027541 80027592 -117167840 + MIRm SINE MIR 92 144 -132 3 1195 194 309 99 0 chr1 80027784 80027865 -117167567 + L2b LINE L2 3287 3375 0 3 1195 220 143 0 23 chr1 80028580 80028623 -117166809 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 1195 198 0 0 0 chr1 80029407 80029429 -117166003 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1195 410 108 0 12 chr1 80029431 80029515 -117165917 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 3 1195 692 263 14 25 chr1 80031090 80031308 -117164124 - B3A SINE B2 0 216 1 3 1195 236 265 112 0 chr1 80031848 80031946 -117163486 + MER53 DNA hAT 19 127 -66 3 1195 364 259 150 9 chr1 80032392 80032505 -117162927 + RSINE1 SINE B4 1 129 -36 3 1195 525 294 92 128 chr1 80033116 80033529 -117161903 - MLT1H LTR MaLR -133 416 19 4 1195 529 189 19 19 chr1 80034004 80034112 -117161320 - B1_Mur1 SINE Alu -28 121 14 4 1195 353 275 13 86 chr1 80034112 80034155 -117161277 - ID_B1 SINE B4 -25 199 60 4 1195 291 239 129 11 chr1 80034182 80034275 -117161157 + RSINE1 SINE B4 2 105 -60 4 1195 470 252 39 16 chr1 80037143 80037272 -117158160 + MLT1J1 LTR MaLR 9 140 -304 4 1195 2361 176 22 48 chr1 80038439 80039321 -117156111 + L1_Mur1 LINE L1 800 1660 -2252 4 1195 667 227 28 0 chr1 80039316 80039457 -117155975 + Lx3C LINE L1 6188 6332 -644 4 1195 1790 77 80 4 chr1 80039460 80039734 -117155698 - MTB_Mm LTR MaLR -1 406 112 4 1195 359 137 7 64 chr1 80040395 80040484 -117154948 - MTB LTR MaLR -253 168 82 4 1195 494 83 14 14 chr1 80040484 80040557 -117154875 + Lx3C LINE L1 6354 6426 -550 4 1195 1675 191 83 11 chr1 80040535 80040895 -117154537 + Lx3C LINE L1 6589 6974 -2 4 1195 1476 176 148 26 chr1 80040962 80041301 -117154131 + ORR1C2 LTR MaLR 5 384 0 5 1195 586 299 5 26 chr1 80041694 80041886 -117153546 + ORR1E LTR MaLR 1 188 -171 5 1195 36657 46 2 15 chr1 80041953 80047138 -117148294 + L1Md_A LINE L1 474 5586 -297 5 1195 8601 30 2 0 chr1 80047138 80048131 -117147301 + L1Md_A LINE L1 5587 6581 -1 5 1195 191 81 54 0 chr1 80048375 80048412 -117147020 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1195 6244 100 10 57 chr1 80048421 80049415 -117146017 - Lx4A LINE L1 0 7058 6112 5 1195 21 0 0 0 chr1 80049425 80049446 -117145986 + AT_rich Low_complexity Low_complexity 1 21 0 5 1195 2815 152 14 10 chr1 80051170 80051681 -117143751 + RLTR28 LTR ERVL 1 513 -11 5 1195 227 254 0 78 chr1 80052252 80052316 -117143116 - ID4_ SINE ID -22 61 3 5 1195 244 146 0 0 chr1 80052327 80052368 -117143064 - L1MEc LINE L1 -4708 1692 1652 5 1195 477 156 19 39 chr1 80052411 80052565 -117142867 + CT-rich Low_complexity Low_complexity 3 153 0 5 1195 482 275 117 52 chr1 80052642 80053068 -117142364 - L1MEc LINE L1 -4838 1562 1109 5 1195 578 263 132 44 chr1 80053190 80053532 -117141900 + L1MEc LINE L1 42 413 -5987 6 1195 272 309 67 90 chr1 80053780 80053958 -117141474 + L1MEc LINE L1 631 804 -5596 6 1195 328 45 23 0 chr1 80053999 80054043 -117141389 - L1Md_F2 LINE L1 -576 5307 5263 6 1195 2368 53 0 3 chr1 80054040 80054325 -117141107 + L1Md_F2 LINE L1 5303 5586 -297 6 1195 8281 41 4 3 chr1 80054325 80055308 -117140124 + L1Md_F2 LINE L1 5587 6570 -12 6 1195 2927 57 5 29 chr1 80055308 80055689 -117139743 + L1Md_F2 LINE L1 6005 6376 -206 6 1195 361 346 32 32 chr1 80055784 80056005 -117139427 + MT2A LTR ERVL 212 432 -101 6 1195 2201 139 9 3 chr1 80056213 80056537 -117138895 - ORR1A3 LTR MaLR 0 326 1 6 1195 274 300 196 20 chr1 80056552 80056705 -117138727 + MLT1A0 LTR MaLR 23 202 -163 6 1195 300 333 0 34 chr1 80057758 80057904 -117137528 - L1MD3 LINE L1 -19 7976 7836 6 1195 306 115 0 0 chr1 80058500 80058552 -117136880 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1195 418 170 11 11 chr1 80058590 80058685 -117136747 + GA-rich Low_complexity Low_complexity 1 95 0 6 1195 184 292 12 100 chr1 80058959 80059039 -117136393 - MER5B DNA MER1_type -63 115 43 6 1195 277 297 75 75 chr1 80059404 80059524 -117135908 + MER63B DNA AcHobo 312 431 -5 7 1195 195 42 0 0 chr1 80060482 80060506 -117134926 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 7 1195 1244 178 46 4 chr1 80060512 80060749 -117134683 - Lx7 LINE L1 -533 7163 6917 7 1195 195 125 0 0 chr1 80061017 80061057 -117134375 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1195 337 247 0 25 chr1 80061374 80061453 -117133979 + MLT1C LTR MaLR 42 118 -349 7 1195 735 239 0 0 chr1 80061456 80061590 -117133842 + B1F1 SINE Alu 3 136 -13 7 1195 293 0 27 0 chr1 80061590 80061627 -117133805 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 7 1195 5020 147 29 1 chr1 80061838 80062572 -117132860 - Lx4A LINE L1 -3 7055 6302 7 1195 801 271 46 20 chr1 80063042 80063238 -117132194 + B3A SINE B2 16 216 0 7 1195 2617 145 3 3 chr1 80064615 80064995 -117130437 - RLTR14 LTR ERV1 0 382 3 7 1195 701 247 25 22 chr1 80065080 80065275 -117130157 - MTE2a LTR MaLR -201 220 37 8 1195 22 0 0 0 chr1 80065641 80065663 -117129769 + AT_rich Low_complexity Low_complexity 1 22 0 8 1195 888 330 13 26 chr1 80066497 80066799 -117128633 + Tigger7 DNA MER2_type 9 306 -2185 8 1195 814 284 95 25 chr1 80066791 80067116 -117128316 + Tigger7 DNA MER2_type 2141 2488 -3 8 1195 644 311 109 12 chr1 80067669 80067926 -117127506 + B4A SINE B4 4 285 -7 8 1195 585 42 0 0 chr1 80067971 80068043 -117127389 + (GA)n Simple_repeat Simple_repeat 2 73 0 8 1195 21 0 0 0 chr1 80068297 80068318 -117127114 + AT_rich Low_complexity Low_complexity 1 21 0 8 1195 237 274 77 94 chr1 80068363 80068480 -117126952 - PB1D10 SINE Alu -1 116 2 8 1195 407 284 0 9 chr1 80068611 80068721 -117126711 + PB1D10 SINE Alu 3 111 -6 8 1195 225 0 0 0 chr1 80068726 80068751 -117126681 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1195 802 161 230 0 chr1 80069209 80069383 -117126049 - URR1A DNA MER1_type -12 214 1 8 1195 181 303 54 33 chr1 80071353 80071445 -117123987 - MER5A DNA MER1_type -1 188 95 9 1195 1669 53 0 5 chr1 80071861 80072051 -117123381 + B2_Mm2 SINE B2 3 191 -4 9 1195 877 221 80 10 chr1 80072858 80073059 -117122373 + B3 SINE B2 2 216 0 9 1195 844 222 121 5 chr1 80073065 80073255 -117122177 + B3 SINE B2 1 212 -4 9 1195 195 304 95 63 chr1 80073333 80073491 -117121941 + MIRb SINE MIR 106 268 0 9 1195 311 201 58 7 chr1 80074580 80074735 -117120697 + (CA)n Simple_repeat Simple_repeat 2 164 0 9 1195 520 174 5 43 chr1 80074750 80074936 -117120496 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1195 256 327 9 9 chr1 80075291 80075402 -117120030 + MER2B DNA MER2_type 179 289 -47 9 1195 249 119 0 0 chr1 80075524 80075566 -117119866 + (AAATG)n Simple_repeat Simple_repeat 2 43 0 9 1195 217 264 73 28 chr1 80075708 80075817 -117119615 - MER5A DNA MER1_type -69 120 7 9 1195 497 279 540 5 chr1 80075842 80076027 -117119405 + B4A SINE B4 5 288 -4 9 1195 239 127 31 31 chr1 80076029 80076094 -117119338 + (TA)n Simple_repeat Simple_repeat 2 66 0 9 1195 709 50 10 19 chr1 80076108 80076211 -117119221 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 1 1195 198 103 0 0 chr1 80076213 80076242 -117119190 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1195 242 323 95 59 chr1 80077196 80077436 -117117996 + MIRb SINE MIR 10 268 0 1 1195 712 214 10 98 chr1 80079388 80079654 -117115778 - ID_B1 SINE B4 -53 239 22 1 1195 258 248 146 9 chr1 80079659 80079769 -117115663 + L1MC4a LINE L1 7747 7871 -11 1 1195 6848 26 18 18 chr1 80081081 80081618 -117113814 + L1Md_F2 LINE L1 4767 5303 -580 1 1195 4730 38 0 0 chr1 80081618 80082144 -117113288 + L1Md_T LINE L1 6057 6582 0 1 1195 6848 26 18 18 chr1 80082144 80082426 -117113006 + L1Md_F2 LINE L1 5304 5586 -297 1 1195 8568 45 4 12 chr1 80082426 80083429 -117112003 + L1Md_F2 LINE L1 5587 6581 -1 1 1195 306 280 96 74 chr1 80084413 80084548 -117110884 - MLT1A LTR MaLR -11 397 260 1 149 1593 235 124 13 chr1 80084572 80085033 -117110399 - MT2A LTR ERVL -4 529 18 1 1196 230 325 33 58 chr1 80085390 80085511 -117109921 + MLT1A LTR MaLR 245 362 -12 1 1196 370 269 97 44 chr1 80085521 80085634 -117109798 - MLT1A LTR MaLR -255 119 1 1 1196 28 61 0 0 chr1 80086331 80086380 -117109052 + AT_rich Low_complexity Low_complexity 1 49 0 1 1196 708 194 78 0 chr1 80086390 80086519 -117108913 - B1_Mur2 SINE Alu -10 139 1 1 1196 488 335 197 36 chr1 80086521 80086830 -117108602 + MLT1C LTR MaLR 35 393 -74 1 1196 221 303 118 0 chr1 80087344 80087420 -117108012 + MER5A DNA MER1_type 4 88 -101 1 1196 2159 283 63 25 chr1 80088323 80088699 -117106733 - Lx8 LINE L1 -2 7471 7069 1 1196 234 0 0 0 chr1 80088699 80088725 -117106707 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1196 2159 283 63 25 chr1 80088725 80089018 -117106414 - Lx8 LINE L1 -405 7068 6778 1 1196 23 68 0 0 chr1 80089665 80089709 -117105723 + AT_rich Low_complexity Low_complexity 1 44 0 1 1196 414 0 0 0 chr1 80090398 80090444 -117104988 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1196 307 257 43 17 chr1 80090447 80090562 -117104870 - L1MA4 LINE L1 -396 6606 6489 1 1196 2026 99 53 3 chr1 80090568 80090871 -117104561 - ORR1A2 LTR MaLR -8 319 2 1 1196 906 293 153 33 chr1 80090871 80091654 -117103778 - L1MA4 LINE L1 -510 6492 5567 1 1196 470 267 67 24 chr1 80091717 80091882 -117103550 - L1MA4 LINE L1 -4280 2569 2398 1 1196 2893 152 17 47 chr1 80091967 80092504 -117102928 - RLTR24 LTR ERV1 -8 521 1 1 1196 973 234 20 20 chr1 80092504 80092696 -117102736 - B3 SINE B2 -24 192 1 1 1196 210 244 21 32 chr1 80092992 80093085 -117102347 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 1 1196 225 0 0 0 chr1 80093094 80093119 -117102313 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1196 586 245 14 0 chr1 80093148 80093287 -117102145 - Lx7 LINE L1 -395 7301 7161 1 1196 25 0 0 0 chr1 80093443 80093468 -117101964 + AT_rich Low_complexity Low_complexity 1 25 0 1 1196 243 305 32 41 chr1 80096773 80096896 -117098536 + MLT1A1 LTR MaLR 287 408 0 1 1196 182 304 111 56 chr1 80098184 80098292 -117097140 - L3 LINE CR1 -135 4354 4241 1 1196 181 161 35 35 chr1 80099271 80099329 -117096103 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1 1196 602 347 47 19 chr1 80099359 80099679 -117095753 - Lx8 LINE L1 -15 7458 7130 1 1196 228 322 126 34 chr1 80100973 80101092 -117094340 - ORR1E LTR MaLR -229 130 1 1 1196 288 231 0 44 chr1 80101211 80101279 -117094153 + RMER15 LTR ERVL 1 65 -510 1 1196 1377 214 175 60 chr1 80101288 80101717 -117093715 + RMER15 LTR ERVL 22 491 -84 1 1196 183 42 0 0 chr1 80101717 80101741 -117093691 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1196 1377 214 175 60 chr1 80101741 80101808 -117093624 + RMER15 LTR ERVL 492 575 0 1 1196 285 210 0 0 chr1 80101963 80102025 -117093407 + GA-rich Low_complexity Low_complexity 1 62 0 1 1196 441 0 0 0 chr1 80103693 80103742 -117091690 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1196 501 17 0 0 chr1 80103742 80103799 -117091633 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1196 28 48 0 0 chr1 80104193 80104235 -117091197 + AT_rich Low_complexity Low_complexity 1 42 0 1 1196 2334 89 33 65 chr1 80105303 80105640 -117089792 - ORR1A3 LTR MaLR 0 326 1 1 1196 816 279 84 28 chr1 80105862 80106187 -117089245 - MTE2b LTR MaLR 0 379 12 1 1196 2980 153 36 6 chr1 80107257 80107763 -117087669 - RLTR28 LTR ERVL -1 523 3 1 1196 1539 206 67 72 chr1 80107851 80107959 -117087473 + RLTR20A LTR ERVK 1 100 -441 1 1196 1259 74 0 0 chr1 80107959 80108107 -117087325 + B1_Mus1 SINE Alu 1 148 0 1 1196 1539 200 252 66 chr1 80108107 80108464 -117086968 + RLTR20A LTR ERVK 101 532 -9 1 1196 2832 156 50 34 chr1 80108457 80108994 -117086438 + RMER15 LTR ERVL 30 575 0 1 1196 1403 234 85 40 chr1 80109275 80109676 -117085756 + MTD LTR MaLR 1 419 0 1 1196 450 0 0 0 chr1 80109983 80110033 -117085399 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1196 779 161 288 32 chr1 80110292 80110518 -117084914 - RMER4A LTR ERVK 0 466 183 1 1196 295 83 0 0 chr1 80110514 80110562 -117084870 + B1_Mus2 SINE Alu 100 147 0 1 1196 408 30 30 15 chr1 80110562 80110629 -117084803 + (CAAAAA)n Simple_repeat Simple_repeat 4 71 0 1 1196 948 171 7 0 chr1 80110631 80110783 -117084649 - RMER4A LTR ERVK -287 179 27 1 1196 1153 76 7 7 chr1 80110790 80110936 -117084496 + B1_Mm SINE Alu 1 146 -1 1 1196 278 162 51 63 chr1 80110988 80111067 -117084365 + Lx6 LINE L1 7383 7460 0 1 1196 367 181 36 12 chr1 80111141 80111225 -117084207 + B1F SINE Alu 52 137 -12 1 1196 219 36 0 0 chr1 80111226 80111254 -117084178 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1196 364 207 113 91 chr1 80111729 80111915 -117083517 - B3A SINE B2 -2 193 4 1 1196 371 160 0 13 chr1 80112052 80112128 -117083304 + CT-rich Low_complexity Low_complexity 2 76 0 1 1196 393 22 0 0 chr1 80112149 80112195 -117083237 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1196 476 241 45 0 chr1 80112279 80112391 -117083041 + PB1D9 SINE Alu 3 119 -1 1 1196 2706 66 6 3 chr1 80112835 80113185 -117082247 + L1_Mus3 LINE L1 6288 6638 0 1 1196 451 316 7 7 chr1 80113380 80113517 -117081915 + ID_B1 SINE B4 81 217 -7 1 1196 342 226 109 36 chr1 80114148 80114258 -117081174 + MER90 LTR ERV1 31 148 -427 1 1196 336 64 0 0 chr1 80114850 80114897 -117080535 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 1196 910 171 191 11 chr1 80115363 80115546 -117079886 - B3 SINE B2 0 216 1 1 1196 312 27 0 0 chr1 80115753 80115790 -117079642 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1196 929 127 21 7 chr1 80116144 80116287 -117079145 - B1_Mus1 SINE Alu -2 146 2 1 1196 208 267 0 51 chr1 80116533 80116612 -117078820 + CT-rich Low_complexity Low_complexity 4 78 0 1 1196 1222 55 0 0 chr1 80117005 80117151 -117078281 - B1_Mus2 SINE Alu 0 147 2 1 1196 550 131 0 27 chr1 80117242 80117352 -117078080 + CT-rich Low_complexity Low_complexity 2 108 0 1 1196 301 397 50 23 chr1 80117440 80117742 -117077690 - L1MC4 LINE L1 -987 7055 6746 1 1196 8803 104 22 9 chr1 80118365 80119656 -117075776 + Lx3C LINE L1 5669 6976 0 1 1196 306 148 0 0 chr1 80119685 80119739 -117075693 + (GGGGA)n Simple_repeat Simple_repeat 1 54 0 1 1196 1475 171 24 200 chr1 80119841 80120307 -117075125 - ORR1C2 LTR MaLR 0 384 1 1 1196 200 115 18 55 chr1 80120489 80120544 -117074888 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 1196 558 295 0 0 chr1 80120851 80120963 -117074469 + RSINE1 SINE B4 32 143 -22 1 1196 333 0 0 0 chr1 80120964 80121001 -117074431 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1196 549 100 0 0 chr1 80121002 80121092 -117074340 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1196 21878 25 0 0 chr1 80121131 80124297 -117071135 - L1Md_T LINE L1 0 6582 3416 1 1196 325 281 219 12 chr1 80124317 80124486 -117070946 + B4 SINE B4 70 273 -19 1 1196 1004 308 82 84 chr1 80124631 80125145 -117070287 + Lx8 LINE L1 6735 7247 -226 1 1196 2233 286 84 42 chr1 80125336 80126250 -117069182 + Lx8 LINE L1 6501 7453 -20 1 1196 22 0 0 0 chr1 80126250 80126272 -117069160 + AT_rich Low_complexity Low_complexity 1 22 0 1 1196 188 143 24 0 chr1 80126397 80126439 -117068993 + (TTATA)n Simple_repeat Simple_repeat 5 47 0 1 1196 39 50 0 0 chr1 80126492 80126552 -117068880 + AT_rich Low_complexity Low_complexity 1 60 0 1 1196 228 284 0 0 chr1 80127896 80127991 -117067441 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1196 583 297 49 57 chr1 80128015 80128261 -117067171 - B4A SINE B4 -47 245 2 1 1196 534 243 65 14 chr1 80128445 80128565 -117066867 + RSINE1 SINE B4 21 148 -17 1 1196 606 28 0 0 chr1 80128565 80128637 -117066795 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1196 534 243 65 14 chr1 80128637 80128654 -117066778 + RSINE1 SINE B4 149 165 0 1 1196 375 241 0 37 chr1 80128656 80128820 -117066612 + (CATA)n Simple_repeat Simple_repeat 1 158 0 1 1196 673 163 15 0 chr1 80129347 80129482 -117065950 + GA-rich Low_complexity Low_complexity 2 138 0 1 1196 400 77 31 0 chr1 80129881 80129946 -117065486 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1196 2500 311 65 40 chr1 80130640 80131640 -117063792 - Lx8 LINE L1 -233 7240 6216 1 1196 422 215 244 6 chr1 80131871 80132035 -117063397 - L1MB3 LINE L1 -277 5906 5704 1 1196 1009 0 0 0 chr1 80132040 80132147 -117063285 + U6 snRNA snRNA 1 107 0 1 1196 31990 38 0 0 chr1 80132147 80135975 -117059457 + L1Md_T LINE L1 1759 5586 -297 1 1196 9058 9 1 0 chr1 80135975 80136970 -117058462 + L1Md_T LINE L1 5587 6582 0 1 1196 258 56 0 0 chr1 80136977 80137013 -117058419 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1196 480 35 0 0 chr1 80137198 80137256 -117058176 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1196 2556 207 77 7 chr1 80137802 80138361 -117057071 - Lx2B LINE L1 0 7000 6403 1 1196 2196 70 9 44 chr1 80138361 80138712 -117056720 + IAPEY_LTR LTR ERVK 53 382 -3 1 1196 1839 134 0 30 chr1 80138712 80139013 -117056419 + IAPEy-int LTR ERVK 2 293 -7220 1 1196 1879 136 3 12 chr1 80139481 80139801 -117055631 + IAPEy-int LTR ERVK 433 749 -6764 1 1196 291 255 20 40 chr1 80139840 80139991 -117055441 + A-rich Low_complexity Low_complexity 1 148 0 1 1196 1662 180 101 45 chr1 80140133 80140615 -117054817 + RMER16-int LTR ERVK 251 819 -4587 1 1196 484 212 88 0 chr1 80140620 80140733 -117054699 + RMER16-int LTR ERVK 938 1060 -5077 1 1196 660 234 374 25 chr1 80140746 80140968 -117054464 + IAPEy-int LTR ERVK 2454 2753 -4653 1 1196 468 69 0 0 chr1 80140994 80141052 -117054380 + IAPEy-int LTR ERVK 3567 3624 -3782 1 1196 588 81 47 66 chr1 80141049 80141155 -117054277 + IAPEy-int LTR ERVK 4567 4670 -2911 1 1196 3099 101 35 16 chr1 80141410 80141845 -117053587 + IAPEy-int LTR ERVK 5203 5645 -1936 1 1196 3564 82 0 2 chr1 80141833 80142288 -117053144 + IAPEy-int LTR ERVK 5761 6214 -1367 1 1196 5400 114 6 6 chr1 80142278 80143057 -117052375 + IAPEy-int LTR ERVK 6735 7513 0 1 1196 2652 61 23 3 chr1 80143057 80143404 -117052028 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1196 2452 173 30 4 chr1 80143409 80143874 -117051558 - Lx2B LINE L1 -594 6406 5930 1 1196 556 165 39 102 chr1 80143873 80144001 -117051431 + L1_Mur2 LINE L1 4630 4749 -1128 1 1196 2048 157 7 7 chr1 80144413 80144769 -117050663 + L1_Mur2 LINE L1 4845 5189 -957 1 1196 734 234 100 11 chr1 80144797 80144987 -117050445 - B3 SINE B2 -9 207 1 2 1196 335 286 56 28 chr1 80145966 80146110 -117049322 + MIRb SINE MIR 93 240 -28 2 1196 664 184 29 0 chr1 80147104 80147240 -117048192 - RLTR17 LTR ERVK -82 610 471 2 1196 965 174 68 60 chr1 80147238 80147489 -117047943 - RLTR17 LTR ERVK -439 253 1 2 1196 801 220 73 0 chr1 80147552 80147729 -117047703 + B4 SINE B4 3 192 -100 2 1196 435 68 0 0 chr1 80147780 80147839 -117047593 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1196 363 276 0 0 chr1 80148433 80148509 -117046923 - ID4_ SINE ID -7 76 1 2 1196 393 308 19 0 chr1 80148514 80148621 -117046811 - PB1D10 SINE Alu -8 109 1 2 1196 642 181 8 25 chr1 80149495 80149614 -117045818 + PB1D10 SINE Alu 1 117 0 2 1196 330 26 0 0 chr1 80149626 80149665 -117045767 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1196 1140 265 69 21 chr1 80149955 80150287 -117045145 - ORR1D2 LTR MaLR 0 370 23 2 1196 930 284 83 15 chr1 80150455 80150791 -117044641 + ORR1E LTR MaLR 1 359 0 2 1196 539 272 172 11 chr1 80150852 80151038 -117044394 + ID_B1 SINE B4 1 216 -8 2 1196 1042 182 108 5 chr1 80151241 80151445 -117043987 - URR1A DNA MER1_type 0 226 2 2 1196 489 34 0 0 chr1 80151901 80151960 -117043472 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 2 1196 477 0 0 0 chr1 80152317 80152370 -117043062 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1196 338 186 0 0 chr1 80152374 80152433 -117042999 - ORR1D2 LTR MaLR 0 370 312 2 1196 1476 229 22 42 chr1 80152552 80152912 -117042520 + ORR1D2 LTR MaLR 7 359 -11 2 1196 366 287 24 16 chr1 80153495 80153619 -117041813 - L1MEc LINE L1 -4346 2054 1930 2 1196 241 227 5 19 chr1 80153681 80153788 -117041644 + L1M4 LINE L1 4950 5058 -1088 2 1196 1407 82 16 0 chr1 80153944 80154128 -117041304 + B2_Mm2 SINE B2 2 188 -7 2 1196 235 288 107 83 chr1 80154142 80154263 -117041169 + B1_Mus2 SINE Alu 24 147 0 2 1196 358 200 22 66 chr1 80154174 80154265 -117041167 + ID_B1 SINE B4 137 223 -1 2 1196 231 225 152 29 chr1 80154536 80154641 -117040791 + L1M4 LINE L1 5746 5863 -581 2 1196 198 0 0 0 chr1 80154895 80154917 -117040515 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 2 1196 269 327 61 6 chr1 80155146 80155309 -117040123 + MER65D LTR ERV1 212 383 -90 2 1196 2905 68 42 3 chr1 80155818 80156200 -117039232 + MTB LTR MaLR 1 397 -3 2 1196 974 254 10 0 chr1 80157056 80157265 -117038167 + ID_B1 SINE B4 1 211 -13 2 1196 350 292 0 17 chr1 80157695 80157810 -117037622 - PB1D10 SINE Alu 0 117 5 2 1196 313 261 0 0 chr1 80158611 80158680 -117036752 - ID4 SINE ID -11 72 4 2 1196 285 29 0 0 chr1 80159176 80159210 -117036222 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1196 254 183 33 0 chr1 80160466 80160526 -117034906 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 2 1196 332 263 9 0 chr1 80160598 80160712 -117034720 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1196 582 197 178 11 chr1 80161458 80161643 -117033789 + B3 SINE B2 1 216 0 2 1196 549 160 0 0 chr1 80162533 80162677 -117032755 + CT-rich Low_complexity Low_complexity 2 145 0 2 1196 444 67 0 0 chr1 80162677 80162737 -117032695 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1196 691 136 100 20 chr1 80162772 80162922 -117032510 + RMER6B LTR ERVK 49 210 -251 2 1196 600 139 20 0 chr1 80162961 80163062 -117032370 + RMER6B LTR ERVK 339 441 -20 2 1196 788 151 56 28 chr1 80163938 80164081 -117031351 - B1_Mur3 SINE Alu -2 147 1 2 1196 385 340 18 6 chr1 80164279 80164442 -117030990 + L1ME1 LINE L1 5806 5970 -209 2 1196 1311 213 107 39 chr1 80164491 80164855 -117030577 - MTD LTR MaLR -14 405 32 2 1196 210 71 0 0 chr1 80164988 80165016 -117030416 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1196 745 257 116 8 chr1 80165114 80165365 -117030067 - B4A SINE B4 -14 278 1 2 1196 697 282 0 0 chr1 80165579 80165742 -117029690 + RSINE1 SINE B4 3 165 0 2 1196 249 108 0 0 chr1 80165749 80165786 -117029646 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 1196 1044 38 38 0 chr1 80166707 80166865 -117028567 + (TG)n Simple_repeat Simple_repeat 2 165 0 2 1196 1200 220 165 73 chr1 80166866 80167346 -117028086 - MT2A LTR ERVL -7 526 3 2 1196 349 280 32 63 chr1 80167369 80167495 -117027937 - RSINE1 SINE B4 -40 125 4 2 1196 1210 174 32 5 chr1 80167973 80168192 -117027240 + URR1B DNA MER1_type 1 225 0 2 1196 342 0 0 0 chr1 80168725 80168763 -117026669 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1196 225 108 0 0 chr1 80168911 80168948 -117026484 + (TTGG)n Simple_repeat Simple_repeat 1 37 0 2 1196 180 0 0 0 chr1 80169020 80169040 -117026392 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1196 2996 81 5 5 chr1 80170121 80170520 -117024912 - MTB LTR MaLR -1 399 1 2 1196 240 59 0 0 chr1 80171791 80171825 -117023607 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2 1196 790 239 5 102 chr1 80171861 80171962 -117023470 - B3 SINE B2 -29 187 98 2 1196 3225 29 39 5 chr1 80171962 80172344 -117023088 + MTA_Mm LTR MaLR 1 395 -1 2 1196 8294 35 2 3 chr1 80172344 80173324 -117022108 + L1Md_F2 LINE L1 5604 6582 0 2 1196 790 239 5 102 chr1 80173324 80173426 -117022006 - B3 SINE B2 -119 97 4 2 1196 571 313 4 77 chr1 80173540 80173775 -117021657 - Lx5 LINE L1 -1 7049 6832 2 1196 425 285 70 41 chr1 80173937 80174109 -117021323 - ORR1E LTR MaLR -182 177 1 2 1196 774 297 60 91 chr1 80174988 80175079 -117020353 + MTEa LTR MaLR 27 129 -250 2 1196 576 0 0 0 chr1 80175079 80175143 -117020289 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1196 774 297 60 91 chr1 80175143 80175403 -117020029 + MTEa LTR MaLR 130 367 -12 2 1196 387 0 0 0 chr1 80176315 80176358 -117019074 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1196 396 0 0 0 chr1 80176358 80176401 -117019031 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1196 457 253 148 34 chr1 80176829 80177005 -117018427 + B3A SINE B2 1 196 -2 2 1196 252 0 0 0 chr1 80178077 80178105 -117017327 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 1196 437 324 67 27 chr1 80178105 80178403 -117017029 - Lx9 LINE L1 -160 7484 7175 2 1196 1827 270 76 2 chr1 80178410 80178881 -117016551 + Lx9 LINE L1 6401 6906 -738 2 1196 414 100 0 0 chr1 80178894 80178954 -117016478 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1196 258 309 170 0 chr1 80179973 80180167 -117015265 - Ricksha DNA MuDR -1028 2218 1992 2 1196 380 242 71 0 chr1 80180410 80180509 -117014923 - Ricksha DNA MuDR -1495 1751 1646 2 1196 885 269 20 0 chr1 80180543 80180744 -117014688 - B4A SINE B4 -5 287 83 2 1196 318 217 47 24 chr1 80181024 80181109 -117014323 - Ricksha DNA MuDR -1891 1355 1269 2 1196 1497 139 0 195 chr1 80181129 80181475 -117013957 + ORR1A3 LTR MaLR 1 287 -39 2 1196 3343 42 19 19 chr1 80181475 80181893 -117013539 + L1Md_F3 LINE L1 6167 6584 0 2 1196 1497 139 0 195 chr1 80181893 80181940 -117013492 + ORR1A3 LTR MaLR 288 317 -9 2 1196 924 230 30 75 chr1 80182142 80182254 -117013178 + ORR1C2 LTR MaLR 5 97 -287 2 1196 7515 15 1 0 chr1 80182254 80183075 -117012357 + RLTR13B2 LTR ERVK 1 822 0 2 1196 924 230 30 75 chr1 80183075 80183230 -117012202 + ORR1C2 LTR MaLR 98 259 -125 2 1196 294 177 16 0 chr1 80183249 80183311 -117012121 + RMER16 LTR ERVK 1 63 -470 2 1196 32932 82 26 43 chr1 80183311 80188187 -117007245 + RMER16-int LTR ERVK 615 5405 -1 2 1196 2290 166 73 94 chr1 80188188 80188732 -117006700 + RMER16 LTR ERVK 1 533 0 2 1196 236 157 78 0 chr1 80188745 80188796 -117006636 + ORR1C2 LTR MaLR 324 378 0 2 1196 32 0 0 0 chr1 80189330 80189362 -117006070 + GC_rich Low_complexity Low_complexity 1 32 0 2 1196 242 277 15 0 chr1 80189609 80189674 -117005758 - Lx8 LINE L1 -299 7174 7109 2 1196 569 322 28 28 chr1 80189910 80190121 -117005311 - ID_B1 SINE B4 -13 211 1 2 1196 622 63 10 21 chr1 80190947 80191044 -117004388 + (GAAA)n Simple_repeat Simple_repeat 4 99 0 2 1196 22 35 0 0 chr1 80191325 80191354 -117004078 + AT_rich Low_complexity Low_complexity 1 29 0 2 1196 225 0 0 0 chr1 80191371 80191396 -117004036 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2 1196 216 0 0 0 chr1 80191941 80191965 -117003467 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1196 237 127 30 45 chr1 80192324 80192390 -117003042 + GA-rich Low_complexity Low_complexity 4 68 0 2 1196 629 292 15 49 chr1 80192471 80192676 -117002756 - B3A SINE B2 0 198 1 2 1196 349 236 278 10 chr1 80192807 80192997 -117002435 + MTE2a LTR MaLR 1 239 -140 2 1196 7720 94 8 2 chr1 80192998 80194062 -117001370 - L1_Mus3 LINE L1 -60 5823 4754 2 1196 6080 74 21 4 chr1 80194067 80194866 -117000566 + L1_Mus3 LINE L1 5822 6634 -4 2 1196 587 89 0 22 chr1 80194871 80194963 -117000469 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 2 1196 543 269 28 0 chr1 80194963 80195108 -117000324 + MTE2a LTR MaLR 229 377 -2 2 1196 384 16 62 16 chr1 80195435 80195499 -116999933 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 1196 1205 223 137 18 chr1 80196095 80196424 -116999008 + MTEb LTR MaLR 12 379 0 2 1196 1066 22 0 0 chr1 80197352 80197486 -116997946 - B1_Mus2 SINE Alu -4 143 10 2 1196 2951 220 177 13 chr1 80198087 80198874 -116996558 + Lx8 LINE L1 6278 7193 -280 2 1196 409 258 192 0 chr1 80199293 80199444 -116995988 - MER58B DNA MER1_type -106 235 56 2 1196 328 111 16 16 chr1 80199488 80199552 -116995880 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1196 247 382 42 18 chr1 80199951 80200119 -116995313 - MER5B DNA MER1_type -5 173 2 2 1196 251 345 0 0 chr1 80200201 80200285 -116995147 + CT-rich Low_complexity Low_complexity 1 84 0 2 1196 225 268 0 0 chr1 80201085 80201141 -116994291 + L1MA4A LINE L1 5668 5723 -580 2 1196 225 0 0 0 chr1 80201163 80201188 -116994244 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1196 868 146 28 0 chr1 80201198 80201342 -116994090 - B1_Mus1 SINE Alu 0 148 1 2 1196 334 279 118 21 chr1 80201348 80201559 -116993873 + L1MA4A LINE L1 5721 5930 -373 2 1196 411 21 0 0 chr1 80201559 80201607 -116993825 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1196 588 143 0 0 chr1 80201602 80201700 -116993732 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1196 22 56 0 0 chr1 80201704 80201740 -116993692 + AT_rich Low_complexity Low_complexity 1 36 0 2 1196 246 189 0 51 chr1 80201770 80201824 -116993608 + (TATAA)n Simple_repeat Simple_repeat 2 52 0 2 1196 905 218 60 149 chr1 80201824 80202240 -116993192 - MTE2a LTR MaLR 0 379 1 3 1196 246 189 0 51 chr1 80202240 80202263 -116993169 + (TATAA)n Simple_repeat Simple_repeat 3 25 0 3 1196 317 287 75 0 chr1 80202459 80202553 -116992879 + RSINE1 SINE B4 5 105 -60 3 1196 188 67 33 0 chr1 80202637 80202667 -116992765 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1196 241 167 0 0 chr1 80203643 80203685 -116991747 + RLTR20B3 LTR ERVK 478 519 -58 3 1196 21 0 0 0 chr1 80203704 80203725 -116991707 + AT_rich Low_complexity Low_complexity 1 21 0 3 1196 483 301 45 7 chr1 80204324 80204478 -116990954 + MIRb SINE MIR 36 195 -73 3 1196 287 0 0 50 chr1 80204759 80204799 -116990633 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1196 258 105 0 0 chr1 80204933 80204971 -116990461 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1196 323 285 48 24 chr1 80205824 80205950 -116989482 + L1MB4 LINE L1 5902 6030 -150 3 1196 529 252 16 8 chr1 80206745 80206873 -116988559 - RSINE1 SINE B4 -24 141 13 3 1196 293 207 176 32 chr1 80207332 80207457 -116987975 + MIRb SINE MIR 84 226 -42 3 1196 414 0 0 0 chr1 80208133 80208179 -116987253 + (CTA)n Simple_repeat Simple_repeat 2 47 0 3 1196 927 174 0 0 chr1 80208184 80208362 -116987070 + CT-rich Low_complexity Low_complexity 3 180 0 3 1196 223 152 0 0 chr1 80208363 80208396 -116987036 + polypyrimidine Low_complexity Low_complexity 2 34 0 3 1196 187 54 54 0 chr1 80208728 80208765 -116986667 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 1196 241 290 62 45 chr1 80208806 80208918 -116986514 - MER5B DNA MER1_type -64 114 1 3 1196 303 216 84 97 chr1 80210923 80211077 -116984355 - MIR SINE MIR -64 198 47 3 1196 433 309 64 14 chr1 80211263 80211404 -116984028 + B1F1 SINE Alu 1 148 -1 3 1196 504 0 0 0 chr1 80212498 80212554 -116982878 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 3 1196 475 163 29 38 chr1 80213533 80213637 -116981795 - PB1D10 SINE Alu -12 105 6 3 1196 417 54 0 0 chr1 80214280 80214336 -116981096 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1196 221 229 27 41 chr1 80215548 80215621 -116979811 - L2b LINE L2 -97 3329 3220 3 1196 519 204 159 0 chr1 80215625 80215738 -116979694 + B1_Mur2 SINE Alu 1 131 -18 3 1196 261 0 0 0 chr1 80215764 80215793 -116979639 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1196 359 113 16 0 chr1 80215793 80215854 -116979578 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1196 333 0 0 0 chr1 80215854 80215890 -116979542 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 149 1290 236 27 32 chr1 80215944 80216316 -116979116 + ORR1D2 LTR MaLR 1 370 0 3 1197 830 155 151 26 chr1 80216529 80216721 -116978711 - URR1A DNA MER1_type -9 217 2 3 1197 511 193 138 0 chr1 80216722 80216831 -116978601 - B1_Mur2 SINE Alu -24 125 2 3 1197 348 262 56 9 chr1 80216962 80217070 -116978362 - MIR SINE MIR -38 224 112 3 1197 267 31 0 0 chr1 80217423 80217455 -116977977 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1197 226 250 9 156 chr1 80218530 80218543 -116976889 - PB1 SINE Alu -18 109 17 3 1197 427 200 83 10 chr1 80218543 80218639 -116976793 - ID_B1 SINE B4 -24 200 98 3 1197 1163 68 7 0 chr1 80218707 80218853 -116976579 + B1_Mus1 SINE Alu 2 148 0 3 1197 21 0 0 0 chr1 80218894 80218915 -116976517 + AT_rich Low_complexity Low_complexity 1 21 0 3 1197 1321 91 11 0 chr1 80219095 80219271 -116976161 + B2_Mm1t SINE B2 2 179 -14 3 1197 296 146 0 35 chr1 80219355 80219412 -116976020 + B2_Mm2 SINE B2 47 101 -94 3 1197 423 0 0 0 chr1 80219428 80219475 -116975957 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1197 1062 207 78 60 chr1 80220468 80220751 -116974681 + B4A SINE B4 4 291 -1 3 1197 315 0 0 0 chr1 80220751 80220786 -116974646 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1197 785 318 45 42 chr1 80220844 80221133 -116974299 + B4 SINE B4 3 292 0 3 1197 229 303 71 77 chr1 80222179 80222476 -116972956 - RMER12 LTR ERVK -263 1059 765 3 1197 206 249 7 34 chr1 80222619 80222768 -116972664 + (CA)n Simple_repeat Simple_repeat 1 144 0 3 1197 357 194 10 98 chr1 80222744 80222938 -116972494 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 3 1197 405 234 40 23 chr1 80223013 80223153 -116972279 + (CA)n Simple_repeat Simple_repeat 1 143 0 3 1197 582 54 0 0 chr1 80223153 80223227 -116972205 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1197 405 234 40 23 chr1 80223227 80223261 -116972171 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1197 769 213 80 71 chr1 80223381 80223593 -116971839 + ID_B1 SINE B4 4 217 -7 3 1197 1160 252 123 50 chr1 80224593 80224773 -116970659 + MTE2b LTR MaLR 1 181 -198 3 1197 1359 81 0 11 chr1 80224773 80224961 -116970471 + B2_Mm2 SINE B2 1 186 -9 3 1197 1160 252 123 50 chr1 80224961 80225097 -116970335 + MTE2b LTR MaLR 182 340 -39 3 1197 21 0 0 0 chr1 80226159 80226180 -116969252 + AT_rich Low_complexity Low_complexity 1 21 0 3 1197 1397 150 58 36 chr1 80226607 80226884 -116968548 + RMER1C Other Other 910 1192 -150 3 1197 351 113 0 0 chr1 80226915 80226968 -116968464 + (TCC)n Simple_repeat Simple_repeat 3 55 0 3 1197 507 155 111 44 chr1 80226980 80227115 -116968317 + RMER1C Other Other 1198 1341 -1 3 1197 234 319 14 14 chr1 80227285 80227358 -116968074 - ID4_ SINE ID -5 78 6 3 1197 291 341 0 12 chr1 80227694 80227780 -116967652 + MLT2B4 LTR ERVL 16 100 -456 3 1197 466 130 0 0 chr1 80228329 80228398 -116967034 + B1_Mus2 SINE Alu 79 147 0 3 1197 395 111 162 18 chr1 80228407 80228507 -116966925 - B2_Mm2 SINE B2 -14 179 47 3 1197 1247 109 11 0 chr1 80228573 80228748 -116966684 - B2_Mm1t SINE B2 -14 179 3 3 1197 2318 112 101 0 chr1 80229133 80229491 -116965941 + ORR1B1 LTR MaLR 1 394 0 3 1197 747 191 356 7 chr1 80231084 80231359 -116964073 + ORR1D1 LTR MaLR 1 372 -2 3 1197 2396 163 2 0 chr1 80232023 80232416 -116963016 + ORR1B1 LTR MaLR 1 394 0 3 1197 243 301 95 14 chr1 80234593 80234667 -116960765 - ID4_ SINE ID -2 81 2 3 1197 305 306 91 10 chr1 80234667 80234760 -116960672 - PB1D10 SINE Alu -37 112 12 3 1197 358 306 61 39 chr1 80234705 80234885 -116960547 + B4 SINE B4 22 205 -87 3 1197 589 198 0 9 chr1 80234775 80234887 -116960545 + B1_Mus1 SINE Alu 7 117 -31 3 1197 393 22 0 0 chr1 80234889 80234935 -116960497 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1197 210 256 0 0 chr1 80235726 80235769 -116959663 + T-rich Low_complexity Low_complexity 4 46 0 3 1197 248 274 0 0 chr1 80235780 80235831 -116959601 - PB1D9 SINE Alu -69 51 1 3 1197 314 98 0 19 chr1 80235918 80235970 -116959462 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 3 1197 21 0 0 0 chr1 80236461 80236482 -116958950 + AT_rich Low_complexity Low_complexity 1 21 0 3 1197 189 0 0 0 chr1 80237274 80237295 -116958137 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1197 240 244 78 70 chr1 80237361 80237489 -116957943 + L1MD2 LINE L1 6214 6342 -17 3 1197 375 270 191 0 chr1 80237517 80237576 -116957856 + ID SINE ID 1 81 -143 3 1197 220 359 77 0 chr1 80237576 80237654 -116957778 + PB1D10 SINE Alu 1 84 -33 3 1197 276 304 77 0 chr1 80237850 80238018 -116957414 - L1M5 LINE L1 -2378 3768 3588 3 1197 26 30 0 0 chr1 80238173 80238206 -116957226 + AT_rich Low_complexity Low_complexity 1 33 0 3 1197 1904 221 42 12 chr1 80238272 80238679 -116956753 + RLTR18B LTR ERVK 92 510 -2 3 1197 643 169 69 8 chr1 80238730 80238861 -116956571 - B3 SINE B2 -5 211 73 3 1197 1040 136 15 55 chr1 80239108 80239310 -116956122 + B2_Mm2 SINE B2 2 195 0 3 1197 362 319 113 21 chr1 80239463 80239649 -116955783 + MLT1A0 LTR MaLR 155 357 -8 3 1197 1430 165 47 0 chr1 80239751 80240006 -116955426 - Lx LINE L1 -177 6477 6211 3 1197 283 281 49 0 chr1 80240899 80240981 -116954451 - MER102c DNA MER1_type -2 329 244 3 1197 337 318 39 0 chr1 80241487 80241616 -116953816 - B1F SINE Alu -11 138 5 3 1197 237 173 38 30 chr1 80241647 80241778 -116953654 + (TA)n Simple_repeat Simple_repeat 2 133 0 3 1197 1184 55 14 0 chr1 80241923 80242069 -116953363 + B1_Mus1 SINE Alu 1 148 0 3 1197 221 234 21 0 chr1 80242862 80242909 -116952523 + GA-rich Low_complexity Low_complexity 3 50 0 3 1197 224 59 0 29 chr1 80242909 80242944 -116952488 + (TTA)n Simple_repeat Simple_repeat 2 35 0 3 1197 210 71 0 0 chr1 80243321 80243349 -116952083 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1197 388 289 96 0 chr1 80243598 80243702 -116951730 + PB1 SINE Alu 7 120 -7 3 1197 301 274 10 0 chr1 80243702 80243804 -116951628 + BC1_Mm scRNA scRNA 8 110 -42 3 1197 3199 85 44 2 chr1 80244701 80245171 -116950261 + RMER16 LTR ERVK 1 533 0 3 1197 598 301 89 118 chr1 80245608 80246186 -116949246 + LTR81B LTR ERV1? 13 566 -827 3 1197 262 250 0 35 chr1 80246726 80246784 -116948648 - B2_Mm2 SINE B2 -137 58 3 3 1197 291 204 57 0 chr1 80248136 80248224 -116947208 - Lx7 LINE L1 0 7696 7604 3 1197 532 275 159 0 chr1 80248688 80248983 -116946449 + L1MC2 LINE L1 4964 5305 -841 3 1197 351 0 0 0 chr1 80249000 80249039 -116946393 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1197 1225 271 110 32 chr1 80249125 80249598 -116945834 + RMER5 LTR ERV1 15 524 -10 3 1197 1217 282 160 17 chr1 80249635 80250346 -116945086 + L1MC2 LINE L1 5310 6122 -222 3 1197 786 204 142 37 chr1 80250611 80251045 -116944387 + RLTR20B3 LTR ERVK 21 521 -56 3 1197 1056 56 41 21 chr1 80251087 80251232 -116944200 - B1_Mus1 SINE Alu 0 148 1 3 1197 222 37 0 0 chr1 80251555 80251582 -116943850 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1197 258 32 0 0 chr1 80251586 80251617 -116943815 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1197 261 0 0 0 chr1 80251617 80251645 -116943787 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1197 511 234 87 35 chr1 80251645 80251760 -116943672 - RSINE1 SINE B4 -41 124 4 4 1197 545 257 0 0 chr1 80251777 80251886 -116943546 - PB1D9 SINE Alu -10 110 2 4 1197 1353 88 39 0 chr1 80252122 80252303 -116943129 + B2_Mm2 SINE B2 1 188 -7 4 1197 476 160 202 124 chr1 80252316 80252351 -116943081 - URR1A DNA MER1_type 0 226 192 4 1197 1294 85 40 0 chr1 80252351 80252528 -116942904 + B2_Mm2 SINE B2 2 185 -10 4 1197 476 160 202 124 chr1 80252528 80252591 -116942841 - URR1A DNA MER1_type -35 191 104 4 1197 1244 114 27 0 chr1 80252591 80252775 -116942657 + B2_Mm1t SINE B2 1 189 -4 4 1197 476 160 202 124 chr1 80252775 80252853 -116942579 - URR1A DNA MER1_type -123 103 35 4 1197 228 135 0 0 chr1 80252977 80253014 -116942418 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1197 685 275 28 0 chr1 80253024 80253166 -116942266 - RSINE1 SINE B4 -5 160 15 4 1197 375 302 249 28 chr1 80253374 80253663 -116941769 + MLT1D LTR MaLR 1 353 -152 4 1197 455 152 0 12 chr1 80254101 80254181 -116941251 - ORR1B1 LTR MaLR -315 79 1 4 1197 482 248 60 19 chr1 80254573 80254720 -116940712 + B3 SINE B2 47 183 -33 4 1197 277 327 63 38 chr1 80254720 80254879 -116940553 - LTR41 LTR ERVL -496 272 110 4 1197 212 333 0 0 chr1 80255824 80255887 -116939545 + L2a LINE L2 3329 3391 -35 4 1197 1674 26 0 0 chr1 80258071 80258263 -116937169 + B2_Mm1t SINE B2 2 193 0 4 1197 1036 118 0 0 chr1 80259183 80259327 -116936105 + B1_Mus1 SINE Alu 5 148 0 4 1197 212 295 60 60 chr1 80260770 80260853 -116934579 + MIRc SINE MIR 24 106 -162 4 1197 248 295 50 40 chr1 80264255 80264354 -116931078 + MIR SINE MIR 3 102 -160 4 1197 450 0 0 0 chr1 80264500 80264550 -116930882 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1197 188 356 55 0 chr1 80264626 80264699 -116930733 - MIRb SINE MIR -187 81 5 4 1197 379 331 102 19 chr1 80265006 80265163 -116930269 - MER5A DNA MER1_type -13 176 7 4 1197 21 57 0 0 chr1 80265978 80266013 -116929419 + AT_rich Low_complexity Low_complexity 1 35 0 4 1197 180 0 0 0 chr1 80266154 80266174 -116929258 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1197 491 279 15 15 chr1 80266174 80266305 -116929127 - B1_Mur1 SINE Alu -18 131 1 4 1197 1200 113 26 21 chr1 80266979 80267168 -116928264 + B2_Mm2 SINE B2 3 192 -3 4 1197 186 43 0 0 chr1 80267308 80267331 -116928101 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 4 1197 21 0 0 0 chr1 80267503 80267524 -116927908 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 612 191 9 0 chr1 80269387 80269492 -116925940 - PB1D9 SINE Alu -13 107 2 4 1197 26 30 0 0 chr1 80269803 80269836 -116925596 + AT_rich Low_complexity Low_complexity 1 33 0 4 1197 490 245 11 0 chr1 80269872 80269966 -116925466 - RSINE1 SINE B4 -54 111 17 4 1197 348 372 77 77 chr1 80270002 80270442 -116924990 + MLT1F LTR MaLR 92 531 -17 4 1197 529 257 9 9 chr1 80270851 80270965 -116924467 + ID_B1 SINE B4 1 114 -110 4 1197 943 139 53 24 chr1 80271348 80271517 -116923915 - B2_Mm2 SINE B2 -7 188 15 4 1197 230 217 16 62 chr1 80271462 80271526 -116923906 - tRNA-Thr-ACA tRNA tRNA -13 63 3 4 1197 300 27 0 0 chr1 80271764 80271801 -116923631 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1197 291 201 694 13 chr1 80271848 80272013 -116923419 + ORR1D1 LTR MaLR 98 374 0 4 1197 235 135 57 19 chr1 80272132 80272185 -116923247 + L1M4 LINE L1 5566 5620 -564 4 1197 198 0 0 0 chr1 80272281 80272303 -116923129 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1197 230 291 42 17 chr1 80272417 80272536 -116922896 + L1M4 LINE L1 5737 5858 -320 4 1197 333 292 204 43 chr1 80275370 80275556 -116919876 - B3A SINE B2 0 216 1 4 1197 4876 185 104 14 chr1 80275686 80277335 -116918097 + Lx5 LINE L1 5148 6966 -84 4 1197 300 27 0 0 chr1 80279809 80279846 -116915586 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1197 198 103 0 0 chr1 80279846 80279874 -116915558 + (CATA)n Simple_repeat Simple_repeat 4 32 0 4 1197 22 56 0 0 chr1 80281282 80281318 -116914114 + AT_rich Low_complexity Low_complexity 1 36 0 4 1197 213 224 20 0 chr1 80282361 80282410 -116913022 + RSINE1 SINE B4 2 51 -114 4 1197 180 0 0 0 chr1 80284239 80284259 -116911173 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1197 1101 44 7 0 chr1 80285530 80285666 -116909766 + B1_Mus1 SINE Alu 2 138 -10 4 1197 225 0 0 0 chr1 80285666 80285691 -116909741 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1197 26 0 0 0 chr1 80286319 80286345 -116909087 + AT_rich Low_complexity Low_complexity 1 26 0 4 1197 225 0 0 0 chr1 80286458 80286483 -116908949 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1197 568 219 194 0 chr1 80289353 80289508 -116905924 + B3 SINE B2 1 185 -31 4 1197 408 20 0 0 chr1 80289518 80289567 -116905865 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1197 721 174 59 22 chr1 80289767 80289902 -116905530 + B1_Mur3 SINE Alu 3 142 -7 4 1197 322 79 32 0 chr1 80290288 80290351 -116905081 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 4 1197 308 289 58 0 chr1 80290876 80290997 -116904435 + L1M4 LINE L1 2366 2493 -3653 4 1197 604 323 44 77 chr1 80291266 80291667 -116903765 - MTE2a LTR MaLR -14 405 6 4 1197 196 305 86 104 chr1 80292135 80292340 -116903092 + MIRm SINE MIR 20 215 -53 4 1197 202 224 224 0 chr1 80292444 80292493 -116902939 + MIR SINE MIR 173 232 -30 4 1197 461 258 124 62 chr1 80293117 80293295 -116902137 + Lx7 LINE L1 7094 7282 -414 4 1197 758 268 77 19 chr1 80294061 80294270 -116901162 + ID_B1 SINE B4 3 223 -1 4 1197 547 300 21 43 chr1 80294371 80294559 -116900873 + B3A SINE B2 6 189 -9 4 1197 374 338 109 9 chr1 80294671 80294886 -116900546 + Lx8 LINE L1 6989 7240 -233 4 1197 230 120 253 46 chr1 80294971 80295058 -116900374 + Lx8 LINE L1 7364 7468 -5 4 1197 2357 163 117 8 chr1 80295460 80295966 -116899466 + RLTR31_Mm LTR ERVK 1 561 0 4 1197 396 338 73 57 chr1 80295972 80296178 -116899254 + Tigger7 DNA MER2_type 70 276 -2215 4 1197 1342 54 32 21 chr1 80296178 80296193 -116899239 - B2_Mm2 SINE B2 -4 191 180 4 1197 408 40 0 0 chr1 80296193 80296243 -116899189 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1197 1342 54 32 21 chr1 80296243 80296415 -116899017 - B2_Mm2 SINE B2 -16 179 2 4 1197 396 338 73 57 chr1 80296415 80296509 -116898923 + Tigger7 DNA MER2_type 277 375 -2116 4 1197 372 303 20 0 chr1 80296591 80296690 -116898742 - ID_B1 SINE B4 -34 190 90 4 1197 228 295 144 37 chr1 80297222 80297437 -116897995 - L2 LINE L2 -1140 2279 2042 4 1197 507 207 53 26 chr1 80297597 80297711 -116897721 + B1_Mur3 SINE Alu 33 149 0 4 1197 472 152 20 0 chr1 80297750 80297849 -116897583 + GA-rich Low_complexity Low_complexity 2 102 0 4 1197 186 43 0 0 chr1 80297850 80297873 -116897559 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 4 1197 855 230 52 42 chr1 80298957 80299170 -116896262 + B3 SINE B2 2 216 0 4 1197 240 292 87 55 chr1 80299269 80299286 -116896146 + ID_B1 SINE B4 78 208 -16 4 1197 501 209 73 0 chr1 80299286 80299396 -116896036 + B1_Mus1 SINE Alu 15 132 -16 4 1197 447 321 94 49 chr1 80299868 80300071 -116895361 - B4A SINE B4 -79 213 2 4 1197 333 98 11 137 chr1 80300202 80300297 -116895135 + L1Md_F2 LINE L1 6500 6582 0 4 1197 504 241 148 25 chr1 80300312 80300474 -116894958 + B3A SINE B2 1 182 -16 4 1197 188 298 0 0 chr1 80300930 80300977 -116894455 + L2 LINE L2 2334 2380 -1039 4 1197 234 345 57 25 chr1 80301126 80301248 -116894184 + MIR SINE MIR 18 143 -119 4 1197 331 185 83 42 chr1 80301698 80301794 -116893638 + RLTR25B LTR ERVK 410 509 -519 4 1197 819 72 0 26 chr1 80301709 80301824 -116893608 + B1_Mus2 SINE Alu 23 134 -13 4 1197 641 286 83 18 chr1 80302070 80302298 -116893134 + MER2 DNA MER2_type 3 245 -100 4 1197 403 344 56 0 chr1 80302774 80302899 -116892533 - RSINE1 SINE B4 -2 163 32 4 1197 248 292 0 15 chr1 80303478 80303544 -116891888 - ID_B1 SINE B4 -34 190 126 4 1197 702 174 0 143 chr1 80303658 80303819 -116891613 - B1_Mur3 SINE Alu 0 149 12 4 1197 1255 285 45 28 chr1 80304011 80304368 -116891064 + ORR1D2 LTR MaLR 1 363 -7 4 1197 348 260 0 0 chr1 80304544 80304617 -116890815 - B3A SINE B2 -125 73 1 4 1197 527 253 152 19 chr1 80305298 80305650 -116889782 + L1MC2 LINE L1 5149 5552 -792 4 1197 498 238 159 41 chr1 80305650 80305895 -116889537 + L1MC2 LINE L1 5732 6005 -339 4 1197 444 293 90 0 chr1 80305984 80306172 -116889260 + L1MC2 LINE L1 6127 6331 -2 4 1197 25 0 0 0 chr1 80306471 80306496 -116888936 + AT_rich Low_complexity Low_complexity 1 25 0 4 1197 238 180 0 116 chr1 80306593 80306662 -116888770 + L1ME1 LINE L1 5300 5360 -813 4 1197 711 285 155 40 chr1 80306702 80307295 -116888137 + L1ME1 LINE L1 5467 6127 -52 4 1197 532 285 23 8 chr1 80309365 80309496 -116885936 - RSINE1 SINE B4 -29 136 4 4 1197 303 258 72 36 chr1 80309541 80309700 -116885732 - B3 SINE B2 -3 192 26 4 1197 7369 143 124 63 chr1 80309702 80311792 -116883640 + Lx5 LINE L1 4086 6334 -716 4 1197 2328 105 105 0 chr1 80311962 80312343 -116883089 - BGLII LTR ERVK 0 421 1 4 1197 21 0 0 0 chr1 80312388 80312409 -116883023 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 272 298 73 21 chr1 80313215 80313251 -116882181 + B4A SINE B4 41 83 -209 4 1197 307 274 112 9 chr1 80313251 80313358 -116882074 + PB1D7 SINE Alu 2 119 -1 4 1197 272 298 73 21 chr1 80313358 80313417 -116882015 + B4A SINE B4 84 140 -152 4 1197 1618 32 0 0 chr1 80313428 80313617 -116881815 + B2_Mm1a SINE B2 2 190 -3 4 1197 396 291 0 28 chr1 80313639 80313745 -116881687 + B1_Mur1 SINE Alu 41 143 -6 5 1197 419 307 65 7 chr1 80314625 80314779 -116880653 + MER58A DNA MER1_type 46 208 -16 5 1197 190 409 114 0 chr1 80314953 80315041 -116880391 + L2b LINE L2 3270 3367 -8 5 1197 24 32 0 0 chr1 80315440 80315471 -116879961 + AT_rich Low_complexity Low_complexity 1 31 0 5 1197 218 193 0 17 chr1 80315737 80315795 -116879637 + (CCTA)n Simple_repeat Simple_repeat 2 58 0 5 1197 257 344 63 50 chr1 80315881 80316040 -116879392 + Tigger8 DNA MER2_type 45 205 -461 5 1197 221 171 0 0 chr1 80316059 80316100 -116879332 + A-rich Low_complexity Low_complexity 1 41 0 5 1197 25 51 0 0 chr1 80316280 80316319 -116879113 + AT_rich Low_complexity Low_complexity 1 39 0 5 1197 438 356 44 28 chr1 80316332 80316514 -116878918 + MLT1A LTR MaLR 183 367 -7 5 1197 1705 217 103 22 chr1 80318192 80318962 -116876470 + L1MC4 LINE L1 7124 8013 -29 5 1197 366 181 28 0 chr1 80320058 80320130 -116875302 + MER5A1 DNA MER1_type 61 134 -32 5 1197 917 330 190 30 chr1 80320146 80321338 -116874094 + L2a LINE L2 1682 3099 -327 5 1197 929 51 0 0 chr1 80321731 80321848 -116873584 + B1_Mm SINE Alu 31 147 0 5 1197 21 0 0 0 chr1 80322374 80322395 -116873037 + AT_rich Low_complexity Low_complexity 1 21 0 5 1197 378 365 15 64 chr1 80322604 80322806 -116872626 + MIR SINE MIR 1 192 -70 5 1197 220 325 12 0 chr1 80323376 80323456 -116871976 + L2 LINE L2 2336 2416 -1003 5 1197 378 0 0 0 chr1 80325032 80325074 -116870358 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1197 483 18 0 0 chr1 80325249 80325305 -116870127 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1197 306 286 12 0 chr1 80325704 80325788 -116869644 + L1MEg LINE L1 1860 1944 -4140 5 1197 579 258 168 5 chr1 80326187 80326390 -116869042 - MER2 DNA MER2_type -3 342 107 5 1197 740 307 40 54 chr1 80327225 80327577 -116867855 + MLT1A1 LTR MaLR 1 387 -21 5 1197 391 264 132 0 chr1 80327612 80327718 -116867714 + B4A SINE B4 1 120 -172 5 1197 1585 186 184 11 chr1 80327764 80328123 -116867309 + MTC LTR MaLR 1 421 0 5 1197 380 37 0 18 chr1 80328211 80328266 -116867166 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1197 1248 110 5 55 chr1 80328324 80328526 -116866906 + B2_Mm1t SINE B2 2 193 0 5 1197 195 265 86 29 chr1 80328965 80329035 -116866397 + MIRb SINE MIR 14 87 -181 5 1197 279 0 0 0 chr1 80330317 80330348 -116865084 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1197 501 213 184 8 chr1 80330434 80330604 -116864828 + B3 SINE B2 1 198 0 5 1197 229 287 159 11 chr1 80331903 80331991 -116863441 + B3 SINE B2 116 216 0 5 1197 36 23 0 0 chr1 80332018 80332061 -116863371 + AT_rich Low_complexity Low_complexity 1 43 0 5 1197 801 222 131 41 chr1 80332343 80332611 -116862821 + B4A SINE B4 1 292 0 5 1197 658 321 31 10 chr1 80332732 80332924 -116862508 + B3A SINE B2 2 197 -1 5 1197 952 203 51 15 chr1 80332928 80333123 -116862309 + B3 SINE B2 5 206 -10 5 1197 618 284 63 32 chr1 80334035 80334224 -116861208 + B3A SINE B2 1 195 -3 5 1197 32 75 0 0 chr1 80336608 80336675 -116858757 + GC_rich Low_complexity Low_complexity 1 67 0 5 1197 198 118 0 0 chr1 80336903 80336937 -116858495 + (CGG)n Simple_repeat Simple_repeat 1 34 0 5 1197 204 261 15 30 chr1 80336973 80337107 -116858325 + G-rich Low_complexity Low_complexity 2 133 0 5 1197 216 188 56 45 chr1 80337015 80337104 -116858328 + (CCGGG)n Simple_repeat Simple_repeat 1 90 0 5 1197 207 69 0 0 chr1 80337228 80337257 -116858175 + (TCC)n Simple_repeat Simple_repeat 2 30 0 5 1197 273 301 11 59 chr1 80337278 80337465 -116857967 + G-rich Low_complexity Low_complexity 2 179 0 5 1197 243 247 10 58 chr1 80337395 80337498 -116857934 + (CGGGG)n Simple_repeat Simple_repeat 3 100 0 5 1197 566 232 27 34 chr1 80338350 80338368 -116857064 + ID_B1 SINE B4 70 215 -9 5 1197 1020 62 0 0 chr1 80338368 80338497 -116856935 + B1_Mus1 SINE Alu 11 139 -9 5 1197 226 24 98 0 chr1 80339040 80339081 -116856351 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 5 1197 298 287 32 0 chr1 80339229 80339323 -116856109 - Charlie18a DNA MER1_type -194 148 52 5 1197 225 0 0 0 chr1 80340778 80340803 -116854629 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1197 252 0 0 0 chr1 80340803 80340830 -116854602 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1197 473 306 7 22 chr1 80340908 80341045 -116854387 - RSINE1 SINE B4 -29 136 2 5 1197 192 158 0 0 chr1 80341671 80341709 -116853723 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 5 1197 266 236 0 18 chr1 80342184 80342240 -116853192 - B4A SINE B4 -237 55 1 5 1197 423 0 0 0 chr1 80342308 80342355 -116853077 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 5 1197 286 239 130 0 chr1 80342604 80342696 -116852736 - MLT1L LTR MaLR 0 610 507 5 1197 949 157 220 5 chr1 80342839 80343025 -116852407 + URR1A DNA MER1_type 1 226 0 5 1197 203 147 0 0 chr1 80343309 80343343 -116852089 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1197 224 212 15 0 chr1 80344015 80344081 -116851351 + CT-rich Low_complexity Low_complexity 1 67 0 5 1197 553 328 49 61 chr1 80344104 80344376 -116851056 - B4A SINE B4 -5 287 2 5 1197 324 0 0 0 chr1 80344656 80344692 -116850740 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1197 402 57 0 0 chr1 80345512 80345565 -116849867 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 5 1197 927 266 9 0 chr1 80345573 80345787 -116849645 - ID_B1 SINE B4 -8 216 1 5 1197 1097 182 20 18 chr1 80345829 80346070 -116849362 + ORR1C2 LTR MaLR 141 381 -13 5 1197 369 365 107 22 chr1 80346086 80346310 -116849122 + LTR40a LTR ERVL 234 476 -43 5 1197 937 248 78 132 chr1 80346321 80346469 -116848963 + MTEa LTR MaLR 15 165 -214 5 1197 454 285 57 50 chr1 80346469 80346628 -116848804 + RSINE1 SINE B4 2 161 -4 5 1197 937 248 78 132 chr1 80346628 80346653 -116848779 + MTEa LTR MaLR 166 182 -197 5 1197 406 258 59 84 chr1 80346653 80346856 -116848576 + B3A SINE B2 1 198 0 5 1197 937 248 78 132 chr1 80346856 80347053 -116848379 + MTEa LTR MaLR 183 366 -13 5 1198 273 233 16 48 chr1 80347373 80347436 -116847996 + B3A SINE B2 28 88 -110 5 1198 1620 238 92 28 chr1 80347438 80347905 -116847527 + RLTR11A2 LTR ERVK 10 506 -21 5 1198 310 314 33 17 chr1 80347953 80348048 -116847384 + B3 SINE B2 68 166 -50 5 1198 198 0 0 0 chr1 80348048 80348070 -116847362 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1198 408 40 0 0 chr1 80348070 80348119 -116847313 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1198 310 314 33 17 chr1 80348119 80348142 -116847290 + B3 SINE B2 167 188 -28 5 1198 31524 76 25 33 chr1 80348489 80353743 -116841689 + L1Md_F LINE L1 369 5585 -298 5 1198 8019 64 11 12 chr1 80353743 80354727 -116840705 + L1Md_F2 LINE L1 5587 6569 -13 5 1198 267 242 151 16 chr1 80354819 80354945 -116840487 + MIR SINE MIR 120 262 0 5 1198 1068 223 86 0 chr1 80355346 80355543 -116839889 - B3 SINE B2 0 216 3 5 1198 25 0 0 0 chr1 80355789 80355814 -116839618 + AT_rich Low_complexity Low_complexity 1 25 0 5 1198 440 244 31 21 chr1 80356500 80356640 -116838792 - B3 SINE B2 -4 212 1 5 1198 348 24 0 0 chr1 80357170 80357211 -116838221 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1198 717 274 92 23 chr1 80357230 80357447 -116837985 + B4 SINE B4 43 274 -18 5 1198 2514 184 47 57 chr1 80357668 80358216 -116837216 - RMER4B LTR ERVK -5 580 38 5 1198 352 85 0 69 chr1 80358226 80358327 -116837105 + T-rich Low_complexity Low_complexity 2 95 0 5 1198 1277 61 0 7 chr1 80358328 80358477 -116836955 - B1_Mus1 SINE Alu 0 148 1 5 1198 236 133 0 62 chr1 80358478 80358526 -116836906 - RMER4B LTR ERVK -421 45 1 5 1198 598 244 8 0 chr1 80358663 80358782 -116836650 - PB1D9 SINE Alu 0 120 1 5 1198 596 265 67 52 chr1 80358786 80359053 -116836379 - MER33 DNA MER1_type -35 289 19 5 1198 274 291 66 82 chr1 80359150 80359442 -116835990 - MTEa LTR MaLR -17 362 65 5 1198 289 335 101 53 chr1 80359576 80359906 -116835526 + MLT1J2 LTR MaLR 101 448 0 5 1198 243 0 0 0 chr1 80360017 80360044 -116835388 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1198 28752 120 18 11 chr1 80360174 80366013 -116829419 + L1_Mus3 LINE L1 767 6638 0 5 1198 407 230 0 13 chr1 80366029 80366104 -116829328 + ID4_ SINE ID 2 75 -8 5 1198 449 308 62 0 chr1 80366153 80366299 -116829133 + RSINE1 SINE B4 1 155 -10 5 1198 2491 263 64 32 chr1 80366311 80367331 -116828101 + L1MB3 LINE L1 5069 6132 -51 5 1198 2600 136 18 92 chr1 80367989 80368444 -116826988 + MTC LTR MaLR 1 421 0 5 1198 945 91 0 169 chr1 80368474 80368646 -116826786 - B1_Mus1 SINE Alu -4 144 2 5 1198 198 0 0 0 chr1 80368903 80368925 -116826507 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1198 1194 96 0 0 chr1 80368925 80369071 -116826361 - B1_Mus1 SINE Alu 0 148 3 5 1198 7062 53 1 5 chr1 80369273 80370106 -116825326 + L1Md_F2 LINE L1 5753 6582 0 5 1198 1023 99 43 0 chr1 80370153 80370294 -116825138 + B1_Mus1 SINE Alu 2 148 0 5 1198 409 285 143 25 chr1 80370721 80370815 -116824617 - Lx9 LINE L1 -29 7615 7511 5 1198 243 0 0 0 chr1 80370815 80370842 -116824590 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1198 409 285 143 25 chr1 80370842 80370992 -116824440 - Lx9 LINE L1 -134 7510 7343 5 1198 288 265 0 0 chr1 80371173 80371256 -116824176 + L1_Rod LINE L1 5737 5819 -28 5 1198 207 0 0 0 chr1 80371321 80371344 -116824088 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1198 339 25 0 0 chr1 80371991 80372031 -116823401 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1198 2497 181 11 70 chr1 80372679 80373219 -116822213 + RLTR25A LTR ERVK 13 520 -583 5 1198 1011 146 171 115 chr1 80373145 80373431 -116822001 + ORR1A3-int LTR MaLR 499 800 -1163 6 1198 1554 113 55 59 chr1 80373250 80373504 -116821928 + MT2B LTR ERVL 35 287 -314 6 1198 1130 181 51 0 chr1 80373463 80373739 -116821693 + ORR1A3-int LTR MaLR 718 1007 -956 6 1198 483 177 57 160 chr1 80373682 80373857 -116821575 + RLTR25A LTR ERVK 618 774 -254 5 1198 284 232 48 24 chr1 80373857 80373941 -116821491 + RLTR25A LTR ERVK 915 1000 -28 5 1198 1621 129 60 15 chr1 80373974 80374241 -116821191 + ORR1A4 LTR MaLR 9 287 -42 6 1198 859 122 0 142 chr1 80374241 80374403 -116821029 + B1_Mus1 SINE Alu 2 140 -8 6 1198 186 71 0 0 chr1 80374403 80374431 -116821001 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1198 946 79 0 23 chr1 80374448 80374578 -116820854 + B1_Mus1 SINE Alu 1 127 -21 6 1198 1241 64 0 0 chr1 80374586 80374727 -116820705 + B1_Mm SINE Alu 1 141 -6 6 1198 971 80 0 7 chr1 80374729 80374868 -116820564 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 6 1198 23 33 0 0 chr1 80375826 80375856 -116819576 + AT_rich Low_complexity Low_complexity 1 30 0 6 1198 3718 87 8 2 chr1 80376257 80376729 -116818703 - MT2C_Mm LTR ERVL 0 475 1 6 1198 288 0 0 0 chr1 80376846 80376878 -116818554 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1198 475 246 82 128 chr1 80376891 80377110 -116818322 - MLT2C2 LTR ERVL -64 400 192 6 1198 1326 60 11 31 chr1 80377720 80377911 -116817521 + L1_Mus3 LINE L1 6452 6638 0 6 1198 479 132 0 0 chr1 80377913 80377981 -116817451 + B1_Mus2 SINE Alu 1 68 -79 6 1198 234 0 0 0 chr1 80377981 80378007 -116817425 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1198 250 301 36 0 chr1 80378041 80378124 -116817308 - B4 SINE B4 -206 86 1 6 1198 276 302 61 15 chr1 80378416 80378547 -116816885 - L1MB8 LINE L1 -153 6031 5895 6 1198 4218 64 10 4 chr1 80378584 80379101 -116816331 - L1Md_F2 LINE L1 -11 6571 6052 6 1198 971 89 0 0 chr1 80379139 80379263 -116816169 + B1_Mus2 SINE Alu 13 136 -11 6 1198 326 257 122 7 chr1 80379302 80379465 -116815967 - L1MB8 LINE L1 -313 5861 5676 6 1198 252 0 0 0 chr1 80379566 80379594 -116815838 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 1198 468 254 35 0 chr1 80381819 80381933 -116813499 - B1_Mus2 SINE Alu 0 147 30 6 1198 488 166 129 65 chr1 80381930 80382085 -116813347 - ORR1B1 LTR MaLR -191 203 39 6 1198 252 0 0 0 chr1 80382090 80382118 -116813314 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1198 502 263 110 55 chr1 80382412 80382557 -116812875 + RSINE1 SINE B4 13 165 0 6 1198 661 215 20 40 chr1 80382604 80382629 -116812803 - B3 SINE B2 -6 210 189 6 1198 225 0 0 0 chr1 80382629 80382654 -116812778 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1198 661 215 20 40 chr1 80382654 80382778 -116812654 - B3 SINE B2 -28 188 64 6 1198 10130 81 25 26 chr1 80382899 80383540 -116811892 - MusHAL1 LINE L1 -627 2085 1453 6 1198 1259 55 7 0 chr1 80383540 80383686 -116811746 - B1_Mus1 SINE Alu 0 148 2 6 1198 10130 81 25 26 chr1 80383686 80384557 -116810875 - MusHAL1 LINE L1 -1260 1452 575 6 1198 1297 55 0 0 chr1 80384557 80384703 -116810729 + B1_Mus2 SINE Alu 1 146 -1 6 1198 8725 149 26 74 chr1 80384703 80384763 -116810669 - L1_Mm LINE L1 -4106 1777 1770 6 1198 4526 23 12 0 chr1 80384763 80385250 -116810182 - MT2_Mm LTR ERVL 0 493 1 6 1198 8725 149 26 74 chr1 80385250 80385507 -116809925 - L1_Mm LINE L1 -4114 1769 1546 6 1198 1248 35 21 0 chr1 80385523 80385668 -116809764 - B1_Mus1 SINE Alu 0 148 1 6 1198 4401 71 194 0 chr1 80385668 80386326 -116809106 - L1VL2 LINE L1 -5373 962 177 6 1198 591 324 76 38 chr1 80386446 80386709 -116808723 + B4A SINE B4 1 273 -19 6 1198 1020 283 43 14 chr1 80387735 80388015 -116807417 - B4A SINE B4 -4 288 1 6 1198 334 294 58 58 chr1 80388378 80388551 -116806881 - L2 LINE L2 -779 2640 2468 6 1198 514 314 112 44 chr1 80388751 80389161 -116806271 - L2 LINE L2 -344 3075 2638 6 1198 435 38 0 0 chr1 80389848 80389901 -116805531 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1198 1074 80 0 0 chr1 80389904 80390041 -116805391 - B1_Mus1 SINE Alu -5 143 7 6 1198 270 0 0 0 chr1 80390569 80390599 -116804833 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1198 4603 101 17 30 chr1 80390738 80391446 -116803986 - Lx LINE L1 0 6654 5956 6 1198 757 88 0 0 chr1 80391455 80391568 -116803864 - L1Md_A LINE L1 0 6582 6470 6 1198 3752 88 12 5 chr1 80391546 80392212 -116803220 - Lx LINE L1 -653 5983 5309 6 1198 207 0 0 0 chr1 80392212 80392235 -116803197 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1198 3752 134 19 8 chr1 80392235 80392251 -116803181 - Lx LINE L1 -575 5308 5293 6 1198 3381 156 50 27 chr1 80392250 80392343 -116803089 + L1_Mur1 LINE L1 4650 4727 -1159 6 1198 1534 60 22 0 chr1 80392343 80392527 -116802905 + B2_Mm2 SINE B2 1 188 -7 6 1198 3381 156 50 27 chr1 80392527 80393058 -116802374 + L1_Mur1 LINE L1 4728 5288 -598 6 1198 1147 89 7 0 chr1 80393080 80393226 -116802206 - B1_Mus1 SINE Alu 0 148 2 6 1198 276 172 0 0 chr1 80393674 80393732 -116801700 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 6 1198 294 331 7 21 chr1 80393744 80393886 -116801546 + (CATATA)n Simple_repeat Simple_repeat 4 143 0 6 1198 432 0 0 0 chr1 80395150 80395198 -116800234 + (TTC)n Simple_repeat Simple_repeat 1 48 0 6 1198 1032 156 0 0 chr1 80395198 80395378 -116800054 + CT-rich Low_complexity Low_complexity 1 180 0 6 1198 1230 68 0 26 chr1 80395379 80395530 -116799902 - B1_Mm SINE Alu 0 147 1 6 1198 396 0 0 0 chr1 80396068 80396112 -116799320 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1198 1096 96 0 14 chr1 80396113 80396251 -116799181 - B1_Mus1 SINE Alu -12 136 1 6 1198 1305 34 0 13 chr1 80396428 80396578 -116798854 + B1_Mus1 SINE Alu 1 148 0 6 1198 1167 83 7 7 chr1 80396746 80396891 -116798541 + B1_Mus1 SINE Alu 4 148 0 6 1198 221 75 25 0 chr1 80396893 80396933 -116798499 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1198 420 205 58 0 chr1 80396937 80397049 -116798383 - L1MD2 LINE L1 -272 5902 5781 6 1198 246 296 126 16 chr1 80397051 80397178 -116798254 - L1M5 LINE L1 -446 5733 5593 6 1198 1738 32 0 0 chr1 80397196 80397384 -116798048 + B2_Mm1a SINE B2 2 189 -4 6 1198 723 113 0 45 chr1 80397482 80397593 -116797839 + B1_Mm SINE Alu 33 138 -9 6 1198 942 84 0 0 chr1 80397593 80397735 -116797697 + (CAAAG)n Simple_repeat Simple_repeat 2 143 0 6 1198 204 125 0 0 chr1 80397736 80397768 -116797664 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 6 1198 180 306 0 0 chr1 80398617 80398666 -116796766 - L2a LINE L2 -35 3391 3343 6 1198 267 342 40 30 chr1 80399041 80399240 -116796192 + MIR SINE MIR 28 228 -34 6 1198 242 340 98 25 chr1 80399511 80399674 -116795758 - Charlie8 DNA MER1_type -2175 253 79 6 1198 310 231 0 0 chr1 80400710 80400775 -116794657 - RMER15 LTR ERVL -108 467 403 6 1198 336 326 135 11 chr1 80400784 80401068 -116794364 - Lx8 LINE L1 -228 7245 6927 6 1198 605 315 24 10 chr1 80401079 80401284 -116794148 + MER20 DNA MER1_type 7 214 -5 6 1198 203 196 18 0 chr1 80401740 80401796 -116793636 + (TAA)n Simple_repeat Simple_repeat 3 59 0 6 1198 2823 129 10 188 chr1 80401815 80402521 -116792911 + RMER6C LTR ERVK 111 690 0 6 1198 1086 90 21 7 chr1 80402830 80402975 -116792457 + B1_Mus2 SINE Alu 1 147 0 6 1198 1174 52 0 0 chr1 80402991 80403127 -116792305 + B1_Mus2 SINE Alu 1 136 -11 6 1198 419 0 20 0 chr1 80403130 80403181 -116792251 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1198 1386 55 0 0 chr1 80403476 80403641 -116791791 + L1Md_T LINE L1 6418 6582 0 6 1198 191 356 42 94 chr1 80403643 80403739 -116791693 - MIR SINE MIR -140 122 32 6 1198 232 280 131 33 chr1 80403973 80404095 -116791337 + MIRc SINE MIR 15 148 -120 6 1198 3588 53 30 0 chr1 80404392 80404823 -116790609 - L1_Mus3 LINE L1 -18 6620 6177 6 1198 230 0 0 32 chr1 80404824 80404855 -116790577 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 1198 297 0 0 0 chr1 80406266 80406299 -116789133 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1198 720 309 54 40 chr1 80406866 80407142 -116788290 - B4A SINE B4 -5 287 8 6 1198 23 0 0 0 chr1 80407198 80407221 -116788211 + AT_rich Low_complexity Low_complexity 1 23 0 6 1198 2353 156 67 21 chr1 80407224 80407643 -116787789 + Lx4B LINE L1 6617 7054 -4 6 1198 32 81 0 0 chr1 80408450 80408524 -116786908 + AT_rich Low_complexity Low_complexity 1 74 0 6 1198 21 82 0 0 chr1 80408587 80408636 -116786796 + AT_rich Low_complexity Low_complexity 1 49 0 6 1198 222 37 0 0 chr1 80408713 80408740 -116786692 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1198 1418 136 28 14 chr1 80409729 80409945 -116785487 + URR1B DNA MER1_type 5 223 -2 6 1198 1231 144 108 10 chr1 80410207 80410411 -116785021 - URR1A DNA MER1_type -2 224 1 6 1198 3443 48 5 2 chr1 80411087 80411482 -116783950 - MTA_Mm LTR MaLR 0 396 1 6 1198 315 312 113 69 chr1 80412038 80412182 -116783250 + LTR16A1 LTR ERVL 207 369 -87 6 1198 828 0 0 0 chr1 80412182 80412274 -116783158 + (TTC)n Simple_repeat Simple_repeat 2 93 0 6 1198 315 312 113 69 chr1 80412274 80412360 -116783072 + LTR16A1 LTR ERVL 370 447 -9 6 1198 198 0 0 0 chr1 80412562 80412584 -116782848 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1198 913 133 28 0 chr1 80412584 80412727 -116782705 - B2_Mm2 SINE B2 -34 161 15 6 1198 605 250 7 58 chr1 80412901 80413090 -116782342 - MLT2B1 LTR ERVL -280 235 60 6 1198 334 261 0 0 chr1 80413095 80413164 -116782268 - ID2 SINE ID -13 70 2 6 1198 336 274 19 9 chr1 80413922 80414029 -116781403 + CT-rich Low_complexity Low_complexity 2 109 0 6 1198 416 230 139 17 chr1 80414034 80414149 -116781283 - B1_Mur1 SINE Alu -16 133 5 6 1198 316 214 0 0 chr1 80414174 80414230 -116781202 - ID4_ SINE ID -27 56 1 6 1198 869 335 102 9 chr1 80414323 80414745 -116780687 + MLT1C LTR MaLR 5 465 -2 6 1198 361 277 126 0 chr1 80415393 80415512 -116779920 - MLT2B1 LTR ERVL -19 548 415 6 1198 261 0 0 0 chr1 80415881 80415910 -116779522 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1198 330 127 0 68 chr1 80415936 80415995 -116779437 - B2_Mm2 SINE B2 -94 101 47 7 1198 1396 263 76 48 chr1 80416210 80416364 -116779068 - RLTR28B LTR ERVL -17 464 313 7 1198 2937 46 6 3 chr1 80416364 80416714 -116778718 + L1_Mus3 LINE L1 6286 6636 -2 7 1198 1396 263 76 48 chr1 80416714 80416995 -116778437 - RLTR28B LTR ERVL -169 312 18 7 1198 401 343 122 38 chr1 80417069 80417575 -116777857 - MLT1H LTR MaLR 0 549 1 7 1198 495 213 138 29 chr1 80417840 80418014 -116777418 + RLTR11A2 LTR ERVK 2 194 -333 7 1198 294 229 124 93 chr1 80418083 80418276 -116777156 + RLTR12A LTR ERVK 370 568 0 7 1198 199 275 0 0 chr1 80418325 80418365 -116777067 + MER5A DNA MER1_type 10 49 -140 7 1198 595 211 130 0 chr1 80418678 80418801 -116776631 + RSINE1 SINE B4 3 141 -24 7 1198 468 0 0 0 chr1 80418801 80418853 -116776579 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1198 802 262 43 29 chr1 80418871 80419017 -116776415 + ID_B1 SINE B4 13 158 -66 7 1198 2229 93 41 9 chr1 80419017 80419332 -116776100 + ORR1A3 LTR MaLR 1 325 -1 7 1198 802 262 43 29 chr1 80419332 80419393 -116776039 + ID_B1 SINE B4 159 222 -2 7 1198 339 230 0 0 chr1 80419930 80420004 -116775428 - B4 SINE B4 -4 288 215 7 1198 808 108 8 66 chr1 80420021 80420278 -116775154 + CT-rich Low_complexity Low_complexity 1 242 0 7 1198 684 263 24 113 chr1 80420278 80420547 -116774885 - B4 SINE B4 -47 245 1 7 1198 31 26 0 0 chr1 80421031 80421069 -116774363 + AT_rich Low_complexity Low_complexity 1 38 0 7 1198 584 68 19 19 chr1 80421073 80421178 -116774254 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1198 488 295 14 21 chr1 80421178 80421320 -116774112 - B3A SINE B2 -57 141 1 7 1198 2670 35 3 0 chr1 80421675 80421988 -116773444 + L1Md_F2 LINE L1 5273 5586 -297 7 1198 8050 46 37 17 chr1 80421988 80422952 -116772480 + L1Md_F2 LINE L1 5587 6570 -12 7 1198 430 254 18 0 chr1 80423314 80423424 -116772008 - MLT1A1 LTR MaLR 0 408 297 7 1198 393 22 0 0 chr1 80423463 80423509 -116771923 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1198 581 316 74 65 chr1 80423590 80423915 -116771517 + MLT1A LTR MaLR 42 369 -5 7 1198 8544 129 71 110 chr1 80425094 80425740 -116769692 - L1VL4 LINE L1 -1878 3999 3258 7 1198 182 37 0 36 chr1 80425740 80425768 -116769664 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1198 1043 73 0 7 chr1 80425770 80425907 -116769525 - L1Md_F2 LINE L1 -19 6563 6428 7 1198 243 31 31 0 chr1 80425907 80425939 -116769493 + B1_Mm SINE Alu 104 136 -11 7 1198 263 192 169 60 chr1 80425925 80426008 -116769424 - RLTR25A LTR ERVK -487 616 525 7 1198 8544 129 71 110 chr1 80425939 80425951 -116769481 - L1VL4 LINE L1 -2620 3257 3246 7 1198 714 61 40 10 chr1 80425951 80426051 -116769381 - B1_Mus1 SINE Alu -45 103 1 7 1198 340 210 67 168 chr1 80426051 80426100 -116769332 - MT2B LTR ERVL -344 257 124 7 1198 8544 129 71 110 chr1 80426100 80427124 -116768308 - L1VL4 LINE L1 -2620 3245 2209 7 1198 1194 101 17 11 chr1 80427125 80427306 -116768126 - B2_Mm2 SINE B2 -1 194 13 7 1198 732 141 3 3 chr1 80427306 80427429 -116768003 - L1VL4 LINE L1 -3629 2218 2086 7 1198 8129 35 18 3 chr1 80427434 80428529 -116766903 - L1Md_F3 LINE L1 -14 6570 5461 7 1198 4399 182 57 13 chr1 80428539 80429759 -116765673 - L1VL4 LINE L1 -3801 2076 798 7 1198 687 327 43 22 chr1 80429935 80430391 -116765041 + MLT1D LTR MaLR 5 496 -9 7 1198 679 318 31 8 chr1 80430397 80430654 -116764778 - L1ME3 LINE L1 -50 6112 5850 7 1198 591 197 60 52 chr1 80430672 80430806 -116764626 - RMER1C Other Other -10 1332 1198 7 1198 252 167 0 0 chr1 80430806 80430854 -116764578 + GA-rich Low_complexity Low_complexity 1 48 0 7 1198 1321 159 82 4 chr1 80430855 80431088 -116764344 - RMER1C Other Other -117 1225 975 7 1198 689 144 159 8 chr1 80431228 80431354 -116764078 - B1_Mur2 SINE Alu -4 145 1 7 1198 254 289 13 0 chr1 80431354 80431430 -116764002 - L1ME3 LINE L1 -744 5700 5624 7 1198 230 282 115 0 chr1 80431434 80431512 -116763920 - MER82 DNA MER2_type -484 169 83 7 1198 414 0 0 0 chr1 80432216 80432262 -116763170 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1198 1699 36 0 20 chr1 80432300 80432496 -116762936 - B2_Mm1a SINE B2 -1 192 1 7 1198 10859 36 41 64 chr1 80432496 80432730 -116762702 - L1Md_F2 LINE L1 -565 6017 5793 7 1198 1334 20 0 0 chr1 80432730 80432877 -116762555 - B1_Mm SINE Alu 0 147 1 7 1198 10859 62 11 21 chr1 80432877 80434184 -116761248 - L1Md_F2 LINE L1 -91 5792 4488 7 1198 304 260 26 0 chr1 80434323 80434400 -116761032 - ID4_ SINE ID -3 80 2 7 1198 200 111 28 0 chr1 80435029 80435065 -116760367 + (CAA)n Simple_repeat Simple_repeat 1 37 0 7 1198 217 160 0 57 chr1 80435971 80436024 -116759408 + A-rich Low_complexity Low_complexity 3 52 0 7 1198 1023 301 14 14 chr1 80436541 80436831 -116758601 - B4A SINE B4 -2 290 1 7 1198 307 244 0 71 chr1 80437096 80437180 -116758252 - MTE2b LTR MaLR -13 366 289 7 1198 686 345 51 7 chr1 80437445 80437740 -116757692 - MTE-int LTR MaLR -42 1538 1231 7 1198 2003 52 4 70 chr1 80438995 80439265 -116756167 - L1_Mus2 LINE L1 -1 6565 6314 7 1198 7478 31 1 4 chr1 80439475 80440306 -116755126 - L1Md_T LINE L1 0 6582 5754 7 1198 1586 17 0 0 chr1 80440306 80440482 -116754950 + L1Md_T LINE L1 5493 5668 -215 7 1198 1341 248 7 79 chr1 80440482 80440885 -116754547 + MTE2b LTR MaLR 5 378 -1 7 1198 318 50 0 0 chr1 80441036 80441076 -116754356 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1198 321 89 0 0 chr1 80441255 80441300 -116754132 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1198 259 327 29 19 chr1 80442194 80442297 -116753135 - B1_Mus2 SINE Alu -43 104 1 7 1198 498 255 134 7 chr1 80442297 80442359 -116753073 - ID SINE ID -143 81 2 7 1198 537 110 0 0 chr1 80443724 80443815 -116751617 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 1198 269 299 35 53 chr1 80445223 80445336 -116750096 - MER5A DNA MER1_type -22 167 57 7 1198 731 177 196 24 chr1 80445681 80445849 -116749583 - URR1A DNA MER1_type -29 197 1 7 1198 468 0 0 0 chr1 80446311 80446363 -116749069 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1198 238 388 60 13 chr1 80447036 80447185 -116748247 - MIR SINE MIR -80 182 27 7 1198 544 258 50 25 chr1 80447313 80447472 -116747960 - RSINE1 SINE B4 0 165 3 7 1198 229 341 31 39 chr1 80448081 80448209 -116747223 - Tigger16a DNA Tigger -48 885 759 7 1198 25 0 0 0 chr1 80448385 80448410 -116747022 + AT_rich Low_complexity Low_complexity 1 25 0 7 1198 247 231 15 15 chr1 80448500 80448566 -116746866 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 7 1198 337 358 123 10 chr1 80448650 80448845 -116746587 + L2 LINE L2 2572 2788 -631 7 1198 1076 58 65 0 chr1 80449075 80449214 -116746218 - B1_Mus1 SINE Alu 0 148 1 7 1198 441 116 0 0 chr1 80449226 80449295 -116746137 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 7 1198 1257 96 17 0 chr1 80449911 80450088 -116745344 + B2_Mm2 SINE B2 2 181 -14 7 1198 253 302 63 81 chr1 80450437 80450660 -116744772 + RMER10A LTR ERVL 205 423 -19 7 1198 555 301 151 14 chr1 80450687 80450906 -116744526 - ORR1E LTR MaLR -110 249 1 7 1198 368 226 148 33 chr1 80452047 80452230 -116743202 + L1MA5 LINE L1 6097 6300 0 7 1198 21 0 0 0 chr1 80453179 80453200 -116742232 + AT_rich Low_complexity Low_complexity 1 21 0 7 1198 576 29 0 0 chr1 80453785 80453855 -116741577 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1198 408 250 0 0 chr1 80454442 80454586 -116740846 + (TG)n Simple_repeat Simple_repeat 1 144 0 7 1198 613 254 148 45 chr1 80454602 80454676 -116740756 - B4 SINE B4 0 292 225 7 1198 672 48 0 0 chr1 80454676 80454760 -116740672 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 7 1198 613 254 148 45 chr1 80454760 80454949 -116740483 - B4 SINE B4 -68 224 4 7 1198 370 280 8 0 chr1 80455124 80455249 -116740183 - L1MA4A LINE L1 -367 5936 5811 7 1198 287 220 82 9 chr1 80455474 80455584 -116739848 - Lx9 LINE L1 0 7644 7527 7 1198 462 18 0 0 chr1 80455598 80455653 -116739779 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1198 342 61 0 0 chr1 80455735 80455784 -116739648 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1198 476 301 16 88 chr1 80456167 80456194 -116739238 + MER20 DNA MER1_type 41 66 -153 7 1198 421 324 35 0 chr1 80456194 80456336 -116739096 - B1F SINE Alu -2 147 1 7 1198 476 301 16 88 chr1 80456336 80456501 -116738931 + MER20 DNA MER1_type 67 219 0 7 1198 180 152 0 0 chr1 80456975 80457008 -116738424 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 1198 450 0 0 0 chr1 80457057 80457107 -116738325 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1198 976 103 13 40 chr1 80458903 80459054 -116736378 - B1_Mus1 SINE Alu 0 148 2 7 1198 941 176 11 50 chr1 80459356 80459520 -116735912 + B2_Mm2 SINE B2 1 162 -33 7 1198 267 31 0 0 chr1 80459520 80459552 -116735880 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1198 941 176 11 50 chr1 80459552 80459567 -116735865 + B2_Mm2 SINE B2 163 173 -22 7 1198 660 286 88 0 chr1 80459825 80460017 -116735415 - ID_B1 SINE B4 -12 212 4 7 1198 965 79 7 0 chr1 80460131 80460270 -116735162 - L1_Mus2 LINE L1 0 6566 6427 7 1198 5278 83 4 1 chr1 80460276 80460985 -116734447 - L1_Mus2 LINE L1 0 6566 5856 7 1198 1234 155 27 9 chr1 80461005 80461226 -116734206 + URR1B DNA MER1_type 1 225 0 7 1198 216 97 0 0 chr1 80462408 80462439 -116732993 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1198 590 230 68 0 chr1 80462716 80462864 -116732568 - ORR1D1 LTR MaLR 0 374 217 7 1198 1419 84 123 34 chr1 80462874 80463109 -116732323 - ORR1A4 LTR MaLR -8 321 66 7 1198 225 0 0 0 chr1 80463684 80463709 -116731723 + (C)n Simple_repeat Simple_repeat 1 25 0 7 1198 798 258 36 63 chr1 80464314 80464537 -116730895 - ID_B1 SINE B4 -7 217 1 7 1198 225 297 41 71 chr1 80464711 80464809 -116730623 + MLT1A LTR MaLR 1 95 -279 7 1198 580 327 98 40 chr1 80465241 80465569 -116729863 + MLT1A LTR MaLR 4 350 -24 7 1198 607 236 0 0 chr1 80466056 80466162 -116729270 - B3 SINE B2 -110 106 1 7 1198 285 342 60 20 chr1 80466187 80466336 -116729096 + L2a LINE L2 3269 3423 -3 7 1198 263 370 47 47 chr1 80467201 80467391 -116728041 + MLT1H1 LTR MaLR 1 190 -365 7 1198 335 348 73 80 chr1 80467418 80467693 -116727739 + ORR1E LTR MaLR 44 316 -43 7 1198 2614 128 2 0 chr1 80467694 80468138 -116727294 - Lx2B LINE L1 -1353 5647 5197 7 1198 2700 118 15 0 chr1 80468138 80468537 -116726895 + Lx2B LINE L1 6592 6996 -4 7 1198 1231 107 0 11 chr1 80468547 80468726 -116726706 + B2_Mm2 SINE B2 1 177 -18 8 1198 313 234 144 72 chr1 80468882 80469062 -116726370 + MLT1A LTR MaLR 357 549 0 7 1198 308 333 40 45 chr1 80469242 80469443 -116725989 + HAL1 LINE L1 1518 1717 -790 8 1198 1810 174 56 17 chr1 80469976 80470332 -116725100 - ORR1C1 LTR MaLR -8 370 1 8 1198 985 185 157 10 chr1 80470401 80470601 -116724831 + Lx9 LINE L1 7287 7488 -156 8 1198 387 0 0 0 chr1 80470601 80470644 -116724788 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1198 985 185 157 10 chr1 80470644 80470749 -116724683 + Lx9 LINE L1 7489 7636 -8 8 1198 21 0 0 0 chr1 80470749 80470770 -116724662 + AT_rich Low_complexity Low_complexity 1 21 0 8 1198 618 252 29 0 chr1 80470917 80471056 -116724376 + B3 SINE B2 67 209 -7 8 1198 249 352 74 42 chr1 80471824 80472014 -116723418 + MLT1J2 LTR MaLR 21 216 -232 8 1198 311 277 11 11 chr1 80472274 80472369 -116723063 + GA-rich Low_complexity Low_complexity 1 95 0 8 1198 383 214 60 55 chr1 80472693 80472842 -116722590 + LTRIS5 LTR ERV1 1 273 -174 8 1198 3124 68 17 12 chr1 80472940 80473345 -116722087 + MTB_Mm LTR MaLR 1 407 0 8 1198 21 0 0 0 chr1 80475331 80475352 -116720080 + AT_rich Low_complexity Low_complexity 1 21 0 8 1198 675 285 122 17 chr1 80476028 80476446 -116718986 + L1ME2z LINE L1 5497 5958 -486 8 1198 256 353 8 41 chr1 80476458 80476579 -116718853 + PB1D10 SINE Alu 1 117 0 8 1198 8584 4 0 0 chr1 80476782 80477826 -116717606 - L1Md_A LINE L1 0 6582 5539 8 1199 512 208 51 60 chr1 80478604 80478819 -116716613 + L1ME2z LINE L1 6033 6245 -199 8 1199 1011 134 99 0 chr1 80478850 80479021 -116716411 + B2_Mm2 SINE B2 1 188 -7 8 1199 521 272 110 6 chr1 80479065 80479228 -116716204 - B3A SINE B2 -18 180 1 8 1199 408 20 0 0 chr1 80479370 80479419 -116716013 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1199 443 329 23 34 chr1 80479553 80479729 -116715703 - B4A SINE B4 -118 174 1 8 1199 21 0 0 0 chr1 80479756 80479777 -116715655 + AT_rich Low_complexity Low_complexity 1 21 0 8 1199 789 308 5 5 chr1 80480777 80480979 -116714453 - ID_B1 SINE B4 -22 202 1 8 1199 378 227 70 0 chr1 80481385 80481513 -116713919 - L1MB2 LINE L1 -3 6168 6032 8 1199 477 233 61 15 chr1 80481560 80481691 -116713741 + L1MB2 LINE L1 5919 6055 -116 8 1199 963 305 85 39 chr1 80481706 80482163 -116713269 - L1M2 LINE L1 -1241 4902 4401 8 1199 786 73 41 0 chr1 80482163 80482229 -116713203 + (TCTA)n Simple_repeat Simple_repeat 1 69 -165 8 1199 786 73 41 0 chr1 80482234 80482388 -116713044 + (TCTA)n Simple_repeat Simple_repeat 70 234 0 8 1199 963 305 85 39 chr1 80482388 80482880 -116712552 - L1M2 LINE L1 -1748 4395 3904 8 1199 589 244 193 23 chr1 80482911 80483129 -116712303 + MTE2a LTR MaLR 1 255 -124 8 1199 267 320 67 28 chr1 80483316 80483823 -116711609 - L1_Mur3 LINE L1 -4075 1805 1279 8 1199 812 130 99 0 chr1 80484168 80484299 -116711133 - B1_Mus1 SINE Alu -2 146 3 8 1199 905 92 34 22 chr1 80484483 80484661 -116710771 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1199 720 155 23 17 chr1 80484621 80484798 -116710634 + CT-rich Low_complexity Low_complexity 3 180 0 8 1199 405 0 0 0 chr1 80485831 80485876 -116709556 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1199 197 140 0 23 chr1 80485897 80485941 -116709491 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 8 1199 689 296 26 76 chr1 80485944 80486247 -116709185 - B4A SINE B4 0 292 5 8 1199 241 281 36 12 chr1 80486304 80486387 -116709045 + Lx8 LINE L1 7268 7352 -121 8 1199 386 284 34 8 chr1 80486395 80486512 -116708920 - Lx8 LINE L1 -229 7244 7125 8 1199 1867 298 44 24 chr1 80486530 80487182 -116708250 - Lx8 LINE L1 -408 7065 6399 8 1199 1715 155 184 35 chr1 80487182 80487583 -116707849 - RMER6B LTR ERVK 0 461 1 8 1199 1867 298 44 24 chr1 80487583 80487607 -116707825 - Lx8 LINE L1 -1075 6398 6375 8 1199 319 329 100 44 chr1 80488186 80488425 -116707007 - MLT1H2 LTR MaLR -187 362 80 8 1199 234 336 63 9 chr1 80490637 80490748 -116704684 - MIR SINE MIR -119 143 27 8 1199 3710 227 154 38 chr1 80491633 80491750 -116703682 - Lx9 LINE L1 -1 7643 7478 8 1199 198 0 0 0 chr1 80491750 80491772 -116703660 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1199 3710 227 154 38 chr1 80491772 80492852 -116702580 - Lx9 LINE L1 -167 7477 6307 8 1199 1438 19 10 0 chr1 80494608 80494815 -116700617 + (TCTA)n Simple_repeat Simple_repeat 1 209 0 8 1199 526 152 158 20 chr1 80494828 80494929 -116700503 - B1_Mur4 SINE Alu -35 115 1 8 1199 23 0 0 0 chr1 80495118 80495141 -116700291 + AT_rich Low_complexity Low_complexity 1 23 0 8 1199 331 115 19 0 chr1 80496707 80496759 -116698673 + HAL1-3A_ME LINE L1 1977 2029 -829 8 1199 623 179 0 7 chr1 80496759 80496900 -116698532 + (CA)n Simple_repeat Simple_repeat 1 140 0 8 1199 279 275 61 44 chr1 80497129 80497243 -116698189 - MLT1I LTR MaLR -279 132 17 8 1199 520 264 112 6 chr1 80497456 80497635 -116697797 - ID_B1 SINE B4 -21 203 6 8 1199 21 0 0 0 chr1 80498692 80498713 -116696719 + AT_rich Low_complexity Low_complexity 1 21 0 8 1199 25 0 0 0 chr1 80499458 80499483 -116695949 + AT_rich Low_complexity Low_complexity 1 25 0 8 1199 326 288 167 0 chr1 80499500 80499632 -116695800 - RSINE1 SINE B4 -10 155 2 8 1199 512 252 49 25 chr1 80499651 80499773 -116695659 - ID_B1 SINE B4 -1 223 99 8 1199 215 319 69 26 chr1 80500034 80500150 -116695282 + L4 LINE RTE 1708 1828 -201 1 1199 734 52 51 7 chr1 80501254 80501391 -116694041 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 2 1199 685 262 130 22 chr1 80502702 80502971 -116692461 + RMER15 LTR ERVL 278 575 0 3 1199 881 124 18 12 chr1 80503320 80503491 -116691941 + CT-rich Low_complexity Low_complexity 4 175 0 4 1199 561 30 0 0 chr1 80503484 80503551 -116691881 + (TCC)n Simple_repeat Simple_repeat 3 69 0 5 1199 383 238 0 0 chr1 80503584 80503664 -116691768 - ID4_ SINE ID -3 80 1 6 1199 1059 252 37 105 chr1 80503766 80504147 -116691285 + MTE2a LTR MaLR 1 355 -24 7 1199 53 63 0 0 chr1 80504163 80504258 -116691174 + AT_rich Low_complexity Low_complexity 1 95 0 8 1199 210 37 0 0 chr1 80504662 80504689 -116690743 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 9 1199 746 241 30 48 chr1 80504709 80504725 -116690707 - RSINE1 SINE B4 0 165 151 1 1199 198 0 0 0 chr1 80504725 80504747 -116690685 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1199 746 241 30 48 chr1 80504747 80504896 -116690536 - RSINE1 SINE B4 -15 150 3 1 1199 502 294 53 95 chr1 80504952 80505256 -116690176 - B4A SINE B4 0 292 2 1 1199 189 0 0 0 chr1 80505399 80505420 -116690012 + (CAGGC)n Simple_repeat Simple_repeat 1 21 0 1 1199 24 32 0 0 chr1 80505969 80506000 -116689432 + AT_rich Low_complexity Low_complexity 1 31 0 1 1199 450 101 0 0 chr1 80506125 80506194 -116689238 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1199 1165 272 75 28 chr1 80506358 80506717 -116688715 + MTEa LTR MaLR 4 379 0 1 1199 1011 222 30 26 chr1 80507372 80507640 -116687792 + Lx2B LINE L1 6731 6999 -1 1 1199 202 269 62 25 chr1 80507895 80507975 -116687457 + L2c LINE L2 3260 3342 -45 1 1199 297 260 148 10 chr1 80508372 80508473 -116686959 - PB1D10 SINE Alu -2 115 1 1 1199 717 291 9 102 chr1 80508588 80508910 -116686522 - B4 SINE B4 0 292 1 2 1199 411 21 0 0 chr1 80509255 80509303 -116686129 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1199 326 171 14 0 chr1 80509746 80509816 -116685616 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1199 381 327 76 112 chr1 80509832 80510135 -116685297 - B4A SINE B4 0 292 1 2 1199 233 333 85 21 chr1 80510450 80510591 -116684841 - MIRc SINE MIR -99 169 20 2 1199 185 360 66 73 chr1 80510954 80511227 -116684205 + L2b LINE L2 3103 3373 -2 2 1199 604 265 42 152 chr1 80511545 80511781 -116683651 + B3 SINE B2 4 213 -3 2 1199 672 49 0 10 chr1 80512472 80512575 -116682857 - L1_Mus3 LINE L1 -1 6637 6536 2 1199 360 348 107 12 chr1 80513314 80513567 -116681865 + B4A SINE B4 1 277 -15 2 1199 342 0 0 0 chr1 80513626 80513664 -116681768 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1199 270 0 0 0 chr1 80513664 80513693 -116681739 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1199 201 171 49 0 chr1 80514597 80514638 -116680794 + C-rich Low_complexity Low_complexity 5 47 0 3 1199 235 329 0 14 chr1 80515101 80515175 -116680257 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1199 790 257 62 29 chr1 80515194 80515402 -116680030 - B4A SINE B4 -72 220 6 3 1199 354 132 26 13 chr1 80516232 80516309 -116679123 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 3 1199 225 0 0 0 chr1 80517045 80517070 -116678362 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1199 1016 129 149 10 chr1 80518175 80518370 -116677062 + URR1A DNA MER1_type 5 226 0 3 1199 288 0 0 0 chr1 80518532 80518564 -116676868 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1199 207 254 29 73 chr1 80521020 80521088 -116674344 + L2 LINE L2 2791 2855 -564 3 1199 2820 143 126 9 chr1 80521298 80521822 -116673610 + RMER4B LTR ERVK 1 585 0 3 1199 216 358 15 0 chr1 80522021 80522088 -116673344 + L2c LINE L2 3283 3350 -37 4 1199 2286 46 3 0 chr1 80523338 80523621 -116671811 + L1Md_A LINE L1 6299 6582 0 4 1199 311 96 0 19 chr1 80524314 80524367 -116671065 + (TTA)n Simple_repeat Simple_repeat 1 52 0 4 1199 277 304 14 14 chr1 80524368 80524438 -116670994 - ID2 SINE ID -3 80 11 4 1199 219 192 19 0 chr1 80524465 80524517 -116670915 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1199 1293 121 121 0 chr1 80527897 80528095 -116667337 - URR1A DNA MER1_type -2 224 3 4 1199 989 287 15 7 chr1 80528182 80528452 -116666980 - B4 SINE B4 -18 274 3 4 1199 329 298 96 9 chr1 80529428 80529543 -116665889 - HAL1-3A_ME LINE L1 -450 2408 2284 4 1199 360 0 0 0 chr1 80529543 80529583 -116665849 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 4 1199 2986 129 77 12 chr1 80529677 80530092 -116665340 + RLTR20A LTR ERVK 1 439 -102 4 1199 360 0 0 0 chr1 80530092 80530132 -116665300 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1199 2986 129 77 12 chr1 80530132 80530224 -116665208 + RLTR20A LTR ERVK 440 540 -1 4 1199 301 349 37 44 chr1 80531258 80531393 -116664039 - L1ME1 LINE L1 -88 6091 5958 5 1199 326 330 24 80 chr1 80531424 80531652 -116663780 - L1ME1 LINE L1 -436 5806 5589 5 1199 457 279 150 12 chr1 80531692 80531852 -116663580 - B3A SINE B2 -16 182 1 5 1199 1303 80 0 16 chr1 80533921 80534111 -116661321 - B2_Mm2 SINE B2 -5 190 4 5 1199 3225 38 10 8 chr1 80534586 80534987 -116660445 + L1Md_F3 LINE L1 6182 6583 -1 5 1199 776 294 59 22 chr1 80535587 80535858 -116659574 + B4A SINE B4 6 286 -6 5 1199 714 85 23 46 chr1 80536050 80536223 -116659209 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 5 1199 392 271 0 0 chr1 80536239 80536324 -116659108 - B4 SINE B4 -207 85 1 5 1199 951 266 35 14 chr1 80538243 80538533 -116656899 - Lx8 LINE L1 -189 7284 6989 5 1199 180 176 0 0 chr1 80538630 80538664 -116656768 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1199 1103 246 70 46 chr1 80538980 80539265 -116656167 - B4A SINE B4 0 292 1 6 1199 258 32 0 0 chr1 80540615 80540646 -116654786 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1199 240 88 53 0 chr1 80540742 80540799 -116654633 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1199 6021 179 35 50 chr1 80540799 80541165 -116654267 + RLTR21 LTR ERVK 1 364 -1208 6 1199 1056 62 0 0 chr1 80541165 80541310 -116654122 + L1Md_A LINE L1 6438 6582 0 6 1199 6021 179 35 50 chr1 80541310 80542210 -116653222 + RLTR21 LTR ERVK 365 1248 -324 6 1199 453 36 0 0 chr1 80542210 80542265 -116653167 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 6 1199 6021 223 29 49 chr1 80542265 80542389 -116653043 + RLTR21 LTR ERVK 1249 1305 -267 6 1199 254 51 51 0 chr1 80542391 80542430 -116653002 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 6 1199 796 192 27 7 chr1 80542584 80542731 -116652701 - B1_Mur4 SINE Alu 0 150 1 6 1199 261 295 14 28 chr1 80543077 80543220 -116652212 + L1MA9 LINE L1 5039 5179 -964 6 1199 217 167 37 0 chr1 80543223 80543277 -116652155 + GA-rich Low_complexity Low_complexity 3 58 0 6 1199 706 291 15 5 chr1 80543350 80543554 -116651878 + B3 SINE B2 1 206 -10 7 1199 738 288 13 32 chr1 80543628 80544001 -116651431 + L1MA9 LINE L1 5303 5668 -623 6 1199 532 281 127 53 chr1 80544117 80544664 -116650768 - L1MA6 LINE L1 -61 6239 5631 7 1199 674 44 11 0 chr1 80544664 80544754 -116650678 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 7 1199 532 281 127 53 chr1 80544754 80544785 -116650647 - L1MA6 LINE L1 -670 5630 5606 7 1199 1129 56 17 22 chr1 80544785 80544966 -116650466 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1199 532 281 127 53 chr1 80544966 80545088 -116650344 - L1MA6 LINE L1 -695 5605 5486 7 1199 242 314 63 5 chr1 80545225 80545430 -116650002 + L1MA9 LINE L1 5896 6112 -200 6 1199 21 71 0 0 chr1 80545815 80545857 -116649575 + AT_rich Low_complexity Low_complexity 1 42 0 7 1199 33 25 0 0 chr1 80545924 80545964 -116649468 + AT_rich Low_complexity Low_complexity 1 40 0 7 1199 204 135 0 0 chr1 80546427 80546464 -116648968 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1199 720 280 86 23 chr1 80547377 80547905 -116647527 + L1_Mur3 LINE L1 2975 3500 -2380 7 1199 23 54 0 0 chr1 80549807 80549844 -116645588 + AT_rich Low_complexity Low_complexity 1 37 0 7 1199 553 364 49 19 chr1 80549847 80550172 -116645260 + Lx8 LINE L1 6921 7255 -218 7 1199 525 267 124 45 chr1 80550317 80550584 -116644848 + B4A SINE B4 5 292 0 8 1199 609 72 0 0 chr1 80551325 80551408 -116644024 + (TTTA)n Simple_repeat Simple_repeat 3 85 0 8 1199 324 0 0 0 chr1 80551456 80551492 -116643940 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1199 969 320 15 22 chr1 80551496 80551768 -116643664 - B4A SINE B4 -19 273 4 8 1199 231 301 47 28 chr1 80552879 80552985 -116642447 - MIR3 SINE MIR -48 160 53 8 1199 366 100 0 0 chr1 80554481 80554541 -116640891 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1199 423 311 161 39 chr1 80555294 80555599 -116639833 + LTR16B LTR ERVL 122 463 0 8 1199 278 106 0 21 chr1 80559484 80559532 -116635900 + (TTC)n Simple_repeat Simple_repeat 2 48 0 8 1199 1121 88 0 0 chr1 80559533 80559680 -116635752 - B1_Mus1 SINE Alu 0 148 2 8 1199 605 199 6 0 chr1 80561908 80562069 -116633363 + (TA)n Simple_repeat Simple_repeat 2 163 0 8 1199 231 61 0 0 chr1 80562072 80562105 -116633327 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 9 1199 23 33 0 0 chr1 80562189 80562219 -116633213 + AT_rich Low_complexity Low_complexity 1 30 0 9 1199 190 70 68 23 chr1 80562334 80562378 -116633054 + A-rich Low_complexity Low_complexity 1 46 0 9 1199 1195 61 0 0 chr1 80562424 80562571 -116632861 - B1_Mus2 SINE Alu 0 147 1 9 1199 509 304 54 27 chr1 80562618 80562912 -116632520 + L1MD1 LINE L1 5624 5925 -317 9 1199 300 154 0 0 chr1 80562924 80562976 -116632456 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1199 376 262 0 0 chr1 80563003 80563106 -116632326 + L1MD1 LINE L1 6132 6234 -8 9 1199 355 340 68 14 chr1 80564228 80564374 -116631058 - HAL1-3A_ME LINE L1 -421 2437 2284 9 1199 474 178 0 44 chr1 80564374 80564533 -116630899 + CT-rich Low_complexity Low_complexity 4 155 0 9 1199 348 326 78 59 chr1 80565680 80565833 -116629599 + MER5A1 DNA MER1_type 11 166 0 9 1199 1544 251 40 47 chr1 80566007 80566429 -116629003 - MTD LTR MaLR 0 419 1 9 1199 340 290 121 16 chr1 80566931 80567084 -116628348 + MLT1D LTR MaLR 2 176 -329 1 1199 213 164 0 68 chr1 80567084 80567113 -116628319 + polypyrimidine Low_complexity Low_complexity 31 57 0 1 1199 1047 109 11 6 chr1 80567113 80567288 -116628144 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 1 1199 213 164 0 68 chr1 80567288 80567317 -116628115 + polypyrimidine Low_complexity Low_complexity 3 30 0 1 1199 574 341 84 0 chr1 80567343 80567522 -116627910 - ID_B1 SINE B4 -27 197 4 1 1199 3717 36 0 0 chr1 80567614 80568054 -116627378 + L1Md_T LINE L1 6142 6581 -1 1 1199 225 119 0 0 chr1 80568072 80568114 -116627318 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1199 249 291 71 18 chr1 80568141 80568253 -116627179 + MLT1D LTR MaLR 388 505 0 1 1199 286 311 94 89 chr1 80568422 80568602 -116626830 + MIRb SINE MIR 40 220 -48 1 1199 216 121 51 17 chr1 80571143 80571202 -116624230 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 1 1199 405 0 0 0 chr1 80572530 80572575 -116622857 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1199 324 287 28 9 chr1 80573058 80573167 -116622265 - PB1D10 SINE Alu -2 115 5 1 1199 750 271 78 13 chr1 80573651 80573936 -116621496 + ORR1E LTR MaLR 51 376 -3 1 1199 399 273 10 39 chr1 80573951 80574054 -116621378 + MER63A DNA AcHobo 38 137 -73 1 1199 186 43 0 0 chr1 80574503 80574526 -116620906 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1 1199 435 38 0 0 chr1 80575345 80575398 -116620034 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1199 7871 40 3 0 chr1 80575441 80576428 -116619004 - L1Md_F2 LINE L1 -5 6577 5588 1 1199 602 287 0 13 chr1 80576451 80576610 -116618822 - B4 SINE B4 -126 166 10 1 1199 367 308 45 8 chr1 80577395 80577529 -116617903 + RSINE1 SINE B4 25 163 -2 1 1199 1251 118 11 0 chr1 80577688 80577875 -116617557 + B2_Mm1t SINE B2 2 190 -3 1 1199 249 336 35 26 chr1 80578151 80578264 -116617168 + PB1D10 SINE Alu 2 115 -2 1 1199 233 310 33 41 chr1 80578355 80578476 -116616956 + L3 LINE CR1 4279 4398 -91 1 1199 272 143 18 0 chr1 80578767 80578823 -116616609 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1199 412 293 109 41 chr1 80579233 80579626 -116615806 + RMER20B LTR ERVK 129 608 -19 1 1199 272 305 221 0 chr1 80581999 80582094 -116613338 - MER58A DNA MER1_type -6 218 103 1 1199 274 333 21 11 chr1 80582147 80582241 -116613191 - MER58A DNA MER1_type -123 101 7 1 1199 23 33 0 0 chr1 80582368 80582398 -116613034 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 22 35 0 0 chr1 80582676 80582705 -116612727 + AT_rich Low_complexity Low_complexity 1 29 0 1 1199 296 188 0 14 chr1 80583757 80583827 -116611605 + CT-rich Low_complexity Low_complexity 2 70 0 1 1199 757 148 32 0 chr1 80583827 80583967 -116611465 - B1_Mus1 SINE Alu 0 148 3 1 1199 322 243 50 116 chr1 80583861 80583970 -116611462 - MT2B LTR ERVL -337 264 164 1 1199 338 154 148 37 chr1 80583970 80584051 -116611381 - 4.5SRNA scRNA scRNA -3 91 2 1 1199 322 243 50 116 chr1 80584051 80584062 -116611370 - MT2B LTR ERVL -438 163 153 1 1199 399 202 0 0 chr1 80584586 80584675 -116610757 + CT-rich Low_complexity Low_complexity 1 89 0 1 1199 1201 257 38 0 chr1 80585405 80585666 -116609766 + B4A SINE B4 1 271 -21 1 1199 396 0 0 0 chr1 80585666 80585710 -116609722 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1199 200 59 29 0 chr1 80586555 80586589 -116608843 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1199 222 271 0 17 chr1 80586819 80586879 -116608553 + B3A SINE B2 1 59 -139 1 1199 497 319 84 6 chr1 80587066 80587233 -116608199 - 7SK RNA RNA -118 213 34 1 1199 22 0 0 0 chr1 80587368 80587390 -116608042 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 352 296 8 17 chr1 80588600 80588717 -116606715 + PB1D10 SINE Alu 1 116 -1 1 1199 252 288 0 0 chr1 80590585 80590644 -116604788 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1199 1839 248 36 18 chr1 80590646 80591143 -116604289 + RLTR11A2 LTR ERVK 5 510 -17 1 1199 252 241 17 0 chr1 80591150 80591208 -116604224 - B4A SINE B4 -18 274 216 1 1199 833 280 4 9 chr1 80591414 80591641 -116603791 - B4A SINE B4 -59 233 8 1 1199 184 93 70 0 chr1 80592768 80592811 -116602621 + (TTAAA)n Simple_repeat Simple_repeat 5 50 0 1 1199 318 341 26 35 chr1 80595191 80595422 -116600010 - HAL1-2a_MD LINE L1 -512 2512 2284 1 1199 327 130 0 0 chr1 80596076 80596130 -116599302 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1199 806 337 47 18 chr1 80596178 80596453 -116598979 - B4A SINE B4 -9 283 1 1 1199 390 42 0 0 chr1 80596583 80596631 -116598801 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1199 441 0 0 0 chr1 80596765 80596814 -116598618 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1199 5526 64 1 1 chr1 80597864 80598614 -116596818 + L1Md_F2 LINE L1 4837 5586 -297 1 1199 7668 65 3 7 chr1 80598615 80599613 -116595819 + L1Md_F2 LINE L1 5588 6581 -1 1 1199 183 186 0 0 chr1 80599714 80599757 -116595675 + T-rich Low_complexity Low_complexity 1 43 0 1 1199 180 317 141 8 chr1 80600673 80600794 -116594638 - MIRb SINE MIR -112 156 20 1 1199 198 0 0 0 chr1 80601368 80601390 -116594042 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1199 1168 85 11 11 chr1 80602012 80602191 -116593241 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 1199 5372 43 0 8 chr1 80603438 80604091 -116591341 - L1Md_F2 LINE L1 -12 6570 5923 1 1199 351 353 26 13 chr1 80605256 80605411 -116590021 + B4A SINE B4 133 289 -3 1 1199 387 258 47 0 chr1 80606307 80606435 -116588997 + L1MA8 LINE L1 6108 6241 -50 1 1199 515 301 62 35 chr1 80606457 80606684 -116588748 - Lx8 LINE L1 -874 6599 6367 1 1199 1791 296 77 21 chr1 80606707 80607322 -116588110 + Lx8 LINE L1 6603 7232 -241 1 1199 237 33 0 0 chr1 80607322 80607352 -116588080 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 1 1199 1791 296 77 21 chr1 80607352 80607556 -116587876 + Lx8 LINE L1 7233 7468 -5 1 1199 395 341 60 60 chr1 80608347 80608481 -116586951 - ID_B1 SINE B4 -10 214 81 1 1200 594 394 10 24 chr1 80609580 80609876 -116585556 + B4A SINE B4 1 292 0 1 1200 966 179 15 29 chr1 80610843 80611080 -116584352 + RLTR20C LTR ERVK 5 433 -101 1 1200 438 20 0 0 chr1 80611085 80611136 -116584296 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1200 543 312 166 57 chr1 80612485 80612757 -116582675 - B4A SINE B4 -4 288 6 1 1200 292 298 91 5 chr1 80613555 80613774 -116581658 + L1MA6 LINE L1 5998 6235 -65 1 1200 332 259 42 105 chr1 80613869 80613964 -116581468 - RSINE1 SINE B4 0 165 77 1 1200 583 187 14 0 chr1 80614090 80614158 -116581274 + polypyrimidine Low_complexity Low_complexity 77 144 0 1 1200 1233 56 0 32 chr1 80614158 80614344 -116581088 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1200 583 187 14 0 chr1 80614344 80614414 -116581018 + polypyrimidine Low_complexity Low_complexity 5 76 0 1 1200 706 117 8 8 chr1 80614407 80614528 -116580904 + (TCC)n Simple_repeat Simple_repeat 3 123 0 1 1200 896 310 33 122 chr1 80614556 80615247 -116580185 + Lx8 LINE L1 6827 7456 -17 1 1200 704 271 24 14 chr1 80615671 80615881 -116579551 - B3 SINE B2 -3 213 2 1 1200 313 280 20 12 chr1 80616035 80616158 -116579274 - ID4_ SINE ID -18 134 10 1 1200 2296 144 8 21 chr1 80616164 80616548 -116578884 + RLTR14 LTR ERV1 4 382 0 1 1200 205 312 25 25 chr1 80616657 80616736 -116578696 - L2a LINE L2 -4 3422 3344 1 1200 318 173 9 46 chr1 80617383 80617492 -116577940 + CT-rich Low_complexity Low_complexity 3 107 0 1 1200 229 247 10 119 chr1 80618376 80618477 -116576955 - MER72B LTR ERV1 -504 264 175 1 1200 387 0 0 0 chr1 80618842 80618885 -116576547 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1200 431 276 34 25 chr1 80619077 80619196 -116576236 - B3 SINE B2 0 216 97 1 1200 868 263 62 131 chr1 80619215 80619665 -116575767 + RLTR23 LTR ERV1 8 426 -4 1 1200 532 211 53 61 chr1 80619635 80619766 -116575666 - B3A SINE B2 -68 130 1 1 1200 866 263 24 0 chr1 80619770 80619975 -116575457 - B3 SINE B2 -6 210 1 1 1200 2162 108 39 0 chr1 80620036 80620343 -116575089 - ORR1A2 LTR MaLR -8 319 1 1 1200 532 274 107 45 chr1 80620382 80620718 -116574714 - ORR1E LTR MaLR -2 357 1 1 1200 975 156 196 0 chr1 80621627 80621806 -116573626 + B3 SINE B2 1 214 -2 1 1200 1002 97 0 0 chr1 80624213 80624357 -116571075 + (TCCCC)n Simple_repeat Simple_repeat 4 147 0 1 1200 26 0 0 0 chr1 80624717 80624743 -116570689 + AT_rich Low_complexity Low_complexity 1 26 0 1 1200 267 122 0 0 chr1 80625729 80625778 -116569654 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1200 224 319 55 48 chr1 80627558 80627703 -116567729 + MIR SINE MIR 2 147 -115 1 1200 315 0 0 0 chr1 80627845 80627880 -116567552 + (TGG)n Simple_repeat Simple_repeat 1 35 0 1 1200 624 14 0 0 chr1 80627880 80627953 -116567479 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1200 215 286 0 0 chr1 80628797 80628860 -116566572 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1 1200 834 149 45 0 chr1 80628865 80628999 -116566433 - B1_Mus2 SINE Alu -7 140 1 1 1200 195 129 0 0 chr1 80629149 80629180 -116566252 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1200 518 302 5 67 chr1 80629464 80629659 -116565773 + B3A SINE B2 6 188 -10 1 1200 22 35 0 0 chr1 80629742 80629771 -116565661 + AT_rich Low_complexity Low_complexity 1 29 0 1 1200 255 61 0 0 chr1 80630057 80630090 -116565342 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 1 1200 863 106 98 0 chr1 80630091 80630223 -116565209 - B1_Mus1 SINE Alu -3 145 1 1 1200 414 0 0 0 chr1 80631262 80631308 -116564124 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1200 225 0 0 0 chr1 80635269 80635294 -116560138 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1200 574 75 0 0 chr1 80635294 80635374 -116560058 - B1_Mur3 SINE Alu 0 149 70 1 1200 1386 232 24 33 chr1 80635486 80635816 -116559616 + MTEa LTR MaLR 51 377 -2 2 1200 1159 172 54 0 chr1 80635872 80636076 -116559356 + B3 SINE B2 2 216 0 2 1200 356 288 48 53 chr1 80636251 80636460 -116558972 - L1MB7 LINE L1 -20 6164 5957 2 1200 330 279 132 68 chr1 80636744 80636963 -116558469 + RMER15 LTR ERVL 329 561 -14 2 1200 274 282 211 0 chr1 80637011 80637167 -116558265 - L1MB7 LINE L1 -321 5857 5669 2 1200 205 232 18 18 chr1 80639413 80639470 -116555962 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2 1200 419 269 40 48 chr1 80639594 80639719 -116555713 - B4 SINE B4 -167 125 2 2 1200 261 399 11 28 chr1 80640265 80640443 -116554989 - L2 LINE L2 -550 2869 2695 2 1200 808 291 72 136 chr1 80641241 80641646 -116553786 + MTE2a LTR MaLR 1 379 0 2 1200 287 298 115 19 chr1 80641733 80641891 -116553541 - Cheshire DNA MER1_type -2235 185 4 2 1200 253 290 0 0 chr1 80643593 80643655 -116551777 - ID SINE ID -159 65 4 2 1200 230 173 12 62 chr1 80643690 80643770 -116551662 + A-rich Low_complexity Low_complexity 5 80 0 2 1200 612 286 111 15 chr1 80644087 80644286 -116551146 - B4 SINE B4 -67 225 8 2 1200 279 0 0 0 chr1 80644291 80644322 -116551110 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 2 1200 285 29 0 0 chr1 80645605 80645639 -116549793 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1200 486 79 0 0 chr1 80646419 80646495 -116548937 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1200 435 38 0 0 chr1 80646585 80646638 -116548794 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1200 626 290 98 4 chr1 80646666 80646912 -116548520 - B4A SINE B4 -19 273 5 2 1200 239 324 0 27 chr1 80647043 80647189 -116548243 + (TCTCTG)n Simple_repeat Simple_repeat 1 142 0 2 1200 329 248 9 37 chr1 80647074 80647183 -116548249 + (TCTG)n Simple_repeat Simple_repeat 3 108 0 2 1200 538 331 53 35 chr1 80647551 80647836 -116547596 + B4 SINE B4 2 291 -1 2 1200 755 303 5 5 chr1 80648359 80648571 -116546861 + ID_B1 SINE B4 3 214 -10 2 1200 22 56 0 0 chr1 80650490 80650526 -116544906 + AT_rich Low_complexity Low_complexity 1 36 0 2 1200 558 108 0 0 chr1 80651609 80651692 -116543740 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1200 890 223 39 10 chr1 80652505 80652709 -116542723 + B3 SINE B2 3 212 -4 2 1200 683 0 24 0 chr1 80652796 80652878 -116542554 + (GGGAGA)n Simple_repeat Simple_repeat 1 84 0 2 1200 191 36 36 0 chr1 80654026 80654054 -116541378 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1200 360 0 0 0 chr1 80655666 80655706 -116539726 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1200 373 233 214 0 chr1 80655733 80655836 -116539596 - B4A SINE B4 -20 272 148 2 1200 280 267 0 0 chr1 80655852 80655912 -116539520 - B4A SINE B4 -231 61 2 2 1200 369 274 0 0 chr1 80656414 80656492 -116538940 + ID4 SINE ID 16 93 -59 2 1200 1255 138 19 19 chr1 80657237 80657451 -116537981 - URR1A DNA MER1_type 0 226 13 2 1200 51 0 0 0 chr1 80657529 80657580 -116537852 + AT_rich Low_complexity Low_complexity 1 51 0 2 1200 192 77 0 0 chr1 80657882 80657908 -116537524 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1200 215 136 0 43 chr1 80659419 80659465 -116535967 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 2 1200 277 397 23 8 chr1 80659641 80659773 -116535659 + MER20 DNA MER1_type 86 219 0 2 1200 7549 29 19 0 chr1 80659938 80660841 -116534591 + L1Md_F2 LINE L1 5663 6582 0 2 1200 456 276 54 23 chr1 80661208 80661338 -116534094 + B1F SINE Alu 15 148 -1 2 1200 278 315 45 30 chr1 80663235 80663369 -116532063 + MIRb SINE MIR 96 231 -37 2 1200 550 347 43 65 chr1 80664352 80664861 -116530571 + Lx8 LINE L1 5790 6287 -1186 2 1200 2371 289 48 50 chr1 80664868 80665900 -116529532 + Lx8 LINE L1 6416 7444 -29 2 1200 2183 78 45 0 chr1 80666081 80666389 -116529043 - L1_Mus1 LINE L1 0 6567 6246 2 1200 777 331 45 42 chr1 80666498 80666879 -116528553 - MLT1E1 LTR MaLR -1 653 203 2 1200 771 291 69 94 chr1 80666999 80667428 -116528004 - MTE2a LTR MaLR 0 419 3 2 1200 31 0 0 0 chr1 80668364 80668395 -116527037 + AT_rich Low_complexity Low_complexity 1 31 0 2 1200 3135 134 50 20 chr1 80669037 80669123 -116526309 + RLTR31B_Mm LTR ERVK 1 87 -470 2 1200 357 24 0 0 chr1 80669123 80669165 -116526267 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1200 3135 134 50 20 chr1 80669165 80669619 -116525813 + RLTR31B_Mm LTR ERVK 88 557 0 2 1200 349 125 0 0 chr1 80669624 80669672 -116525760 - RMER10B LTR ERVL -319 79 32 2 1200 322 296 33 136 chr1 80670265 80670449 -116524983 - MER20 DNA MER1_type -26 193 29 2 1200 353 320 55 8 chr1 80670873 80671035 -116524397 + MIR SINE MIR 71 260 -8 2 1200 333 208 0 0 chr1 80672451 80672528 -116522904 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1200 312 297 44 0 chr1 80673802 80673893 -116521539 - B1F SINE Alu -52 97 3 2 1200 333 0 0 0 chr1 80674225 80674262 -116521170 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1200 880 76 0 0 chr1 80674513 80674632 -116520800 - Lx LINE L1 -905 5749 5631 2 1200 5336 103 40 41 chr1 80674625 80675528 -116519904 + Lx LINE L1 5734 6635 -19 2 1200 3721 29 9 0 chr1 80675617 80676059 -116519373 + L1Md_A LINE L1 6136 6581 -1 2 1200 546 278 114 4 chr1 80677235 80677481 -116517951 + Lx9 LINE L1 7222 7494 -150 2 1200 682 174 34 27 chr1 80677597 80677745 -116517687 + B1_Mur4 SINE Alu 1 149 -1 2 1200 1023 221 72 8 chr1 80677822 80678087 -116517345 - Lx6 LINE L1 -4 7456 7175 2 1200 1246 41 0 0 chr1 80678143 80678289 -116517143 - B1_Mm SINE Alu -1 146 1 2 1200 22 0 0 0 chr1 80678992 80679014 -116516418 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 32 26 0 0 chr1 80679168 80679207 -116516225 + AT_rich Low_complexity Low_complexity 1 39 0 2 1200 28224 85 3 1 chr1 80679214 80681140 -116514292 - L1_Mus1 LINE L1 0 6567 4738 2 1200 183 42 0 0 chr1 80681140 80681164 -116514268 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1200 28224 101 6 1 chr1 80681164 80684330 -116511102 - L1_Mus1 LINE L1 -1146 4737 1546 2 1200 39490 4 0 0 chr1 80684324 80690889 -116504543 - L1Md_A LINE L1 0 6582 18 2 1200 4193 143 61 3 chr1 80690889 80692117 -116503315 - L1_Mus1 LINE L1 -4321 1562 206 2 1200 639 204 224 17 chr1 80692164 80692343 -116503089 - B3 SINE B2 0 216 1 2 1200 686 126 108 16 chr1 80694059 80694188 -116501244 + MTC LTR MaLR 1 141 -280 2 1200 1792 127 3 25 chr1 80694303 80694586 -116500846 + MTC LTR MaLR 145 421 0 2 1200 317 309 40 8 chr1 80696587 80696711 -116498721 + Charlie5 DNA MER1_type 1 128 -2496 2 1200 359 304 40 7 chr1 80696714 80696863 -116498569 + Charlie5 DNA MER1_type 2240 2393 -231 2 1200 198 0 0 0 chr1 80696873 80696895 -116498537 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1200 387 295 25 0 chr1 80697022 80697144 -116498288 - B4A SINE B4 -167 125 1 2 1200 253 386 0 0 chr1 80697552 80697653 -116497779 - MIR SINE MIR -3 259 159 2 1200 286 336 8 66 chr1 80697653 80697774 -116497658 + MLT1E2 LTR MaLR 1 114 -513 2 1200 228 371 75 92 chr1 80697891 80698262 -116497170 - ORR1D2 LTR MaLR 0 370 6 2 1200 28 29 0 0 chr1 80698605 80698640 -116496792 + AT_rich Low_complexity Low_complexity 1 35 0 2 1200 273 57 0 0 chr1 80698780 80698815 -116496617 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1200 23 0 0 0 chr1 80699577 80699600 -116495832 + AT_rich Low_complexity Low_complexity 1 23 0 2 1200 666 325 47 58 chr1 80699932 80700297 -116495135 + ORR1D2 LTR MaLR 10 370 0 2 1200 369 0 0 0 chr1 80700357 80700398 -116495034 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 2 1200 748 313 15 5 chr1 80701509 80701708 -116493724 + B4 SINE B4 5 205 -87 2 1200 726 184 23 6 chr1 80701710 80701820 -116493612 + polypurine Low_complexity Low_complexity 3 111 0 2 1200 1143 89 6 11 chr1 80701820 80702001 -116493431 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1200 726 184 23 6 chr1 80702001 80702065 -116493367 + polypurine Low_complexity Low_complexity 112 179 0 2 1200 256 360 29 14 chr1 80702886 80703024 -116492408 + L2 LINE L2 2365 2504 -915 2 1200 809 244 73 15 chr1 80703073 80703277 -116492155 + B3 SINE B2 1 216 0 2 1200 291 349 90 34 chr1 80703311 80703489 -116491943 + L2 LINE L2 2578 2765 -654 2 1200 552 246 47 6 chr1 80704131 80704303 -116491129 - L1MA6 LINE L1 -5 6295 6117 2 1200 30 45 0 0 chr1 80704598 80704642 -116490790 + AT_rich Low_complexity Low_complexity 1 44 0 2 1200 496 40 0 26 chr1 80706359 80706436 -116488996 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1200 255 190 0 0 chr1 80709032 80709090 -116486342 + GA-rich Low_complexity Low_complexity 3 60 0 2 1200 393 22 0 0 chr1 80710143 80710189 -116485243 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1200 380 20 0 20 chr1 80710189 80710238 -116485194 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1200 1967 130 14 58 chr1 80710614 80710958 -116484474 + ORR1A4 LTR MaLR 1 329 0 2 1200 1112 109 11 0 chr1 80711650 80711824 -116483608 + (TTCC)n Simple_repeat Simple_repeat 1 176 0 2 1200 552 100 0 0 chr1 80711848 80711928 -116483504 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 2 1200 218 286 0 0 chr1 80713243 80713285 -116482147 + MIRb SINE MIR 34 75 -193 2 1200 1222 98 38 11 chr1 80713504 80713689 -116481743 + B2_Mm2 SINE B2 2 191 -4 2 1200 1130 121 3 3 chr1 80714585 80714894 -116480538 + (TTC)n Simple_repeat Simple_repeat 1 309 0 2 1200 598 255 35 7 chr1 80715821 80715963 -116479469 - B1_Mur1 SINE Alu -1 148 3 2 1200 359 303 140 7 chr1 80716241 80716384 -116479048 + B4 SINE B4 115 276 -16 2 1200 293 351 21 31 chr1 80716751 80716942 -116478490 + Charlie22a DNA MER1_type 122 310 -181 2 1200 224 213 16 0 chr1 80717641 80717702 -116477730 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2 1200 354 45 0 0 chr1 80718220 80718264 -116477168 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1200 348 376 58 16 chr1 80718884 80719073 -116476359 - MLT1A0 LTR MaLR 0 365 169 2 1200 277 271 34 98 chr1 80720703 80720870 -116474562 - MIRc SINE MIR -57 151 3 2 1200 195 256 125 55 chr1 80721717 80721845 -116473587 + L3 LINE CR1 3189 3325 -1164 2 1200 564 321 38 13 chr1 80722241 80722399 -116473033 + RSINE1 SINE B4 3 164 -1 2 1200 208 150 0 104 chr1 80722407 80722474 -116472958 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 3 1200 653 216 153 0 chr1 80722664 80722840 -116472592 + B3 SINE B2 1 203 -13 3 1200 306 194 41 41 chr1 80722923 80723020 -116472412 + L1M4b LINE L1 2210 2306 -5028 3 1200 21 57 0 0 chr1 80723403 80723438 -116471994 + AT_rich Low_complexity Low_complexity 1 35 0 3 1200 399 148 0 0 chr1 80725110 80725198 -116470234 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 1200 643 319 60 65 chr1 80725433 80725769 -116469663 - ORR1E LTR MaLR -4 355 22 3 1200 324 264 0 0 chr1 80729584 80729709 -116465723 + (TG)n Simple_repeat Simple_repeat 1 125 0 3 1200 1109 262 10 7 chr1 80729721 80730009 -116465423 - B4 SINE B4 -2 290 2 3 1200 1393 148 92 0 chr1 80730331 80730581 -116464851 + Lx5 LINE L1 6773 7045 -5 3 1200 22 70 0 0 chr1 80731131 80731174 -116464258 + AT_rich Low_complexity Low_complexity 1 43 0 3 1200 231 211 0 0 chr1 80731226 80731283 -116464149 + A-rich Low_complexity Low_complexity 1 57 0 3 1200 360 231 90 27 chr1 80731599 80731710 -116463722 + B3 SINE B2 99 216 0 3 1200 550 273 116 46 chr1 80731757 80731913 -116463519 + B3A SINE B2 6 179 -19 3 1200 189 0 0 0 chr1 80731913 80731934 -116463498 + (CATA)n Simple_repeat Simple_repeat 3 23 0 3 1200 550 273 116 46 chr1 80731934 80731950 -116463482 + B3A SINE B2 180 190 -8 3 1200 180 111 67 0 chr1 80735042 80735087 -116460345 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1200 1396 207 46 55 chr1 80735930 80736278 -116459154 + ORR1D2 LTR MaLR 2 346 -24 3 1200 1069 279 81 43 chr1 80736285 80736537 -116458895 + RLTR12B LTR ERVK 1 290 -238 3 1200 1165 51 13 0 chr1 80736537 80736694 -116458738 + (GA)n Simple_repeat Simple_repeat 2 160 0 3 1200 1069 276 82 40 chr1 80736694 80736916 -116458516 + RLTR12B LTR ERVK 291 514 -14 3 1200 345 40 120 0 chr1 80737558 80737608 -116457824 - L1Md_F3 LINE L1 -201 6383 6328 3 1200 32 0 0 0 chr1 80737609 80737641 -116457791 + AT_rich Low_complexity Low_complexity 1 32 0 3 1200 210 105 0 0 chr1 80737653 80737691 -116457741 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1200 1863 211 47 0 chr1 80738418 80738801 -116456631 - Lx5 LINE L1 -147 6903 6503 3 1200 304 274 0 27 chr1 80738824 80738899 -116456533 + G-rich Low_complexity Low_complexity 2 74 0 3 1200 201 132 0 0 chr1 80738949 80738987 -116456445 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1200 310 327 82 39 chr1 80739272 80739479 -116455953 + L1M5 LINE L1 5354 5569 -671 3 1200 444 67 0 0 chr1 80739516 80739576 -116455856 + (TCC)n Simple_repeat Simple_repeat 2 61 0 3 1200 428 51 0 17 chr1 80739568 80739628 -116455804 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 3 1200 922 162 37 12 chr1 80739628 80739790 -116455642 - B2_Mm2 SINE B2 -28 167 2 3 1201 463 277 91 51 chr1 80740398 80740573 -116454859 + B4 SINE B4 1 182 -110 3 1201 457 147 51 0 chr1 80740584 80740740 -116454692 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 1201 245 198 39 16 chr1 80740757 80740885 -116454547 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1201 520 254 98 7 chr1 80741496 80741639 -116453793 + MTEb LTR MaLR 1 156 -223 3 1201 577 298 106 137 chr1 80741727 80742127 -116453305 + MLT1E2 LTR MaLR 23 496 -131 3 1201 2863 70 46 15 chr1 80742127 80742522 -116452910 - MTB_Mm LTR MaLR 0 407 1 3 1201 480 298 106 137 chr1 80742522 80742611 -116452821 + MLT1E2 LTR MaLR 406 499 -6 3 1201 210 71 0 0 chr1 80743203 80743231 -116452201 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1201 472 42 28 0 chr1 80743536 80743607 -116451825 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1201 34 0 0 0 chr1 80743690 80743724 -116451708 + AT_rich Low_complexity Low_complexity 1 34 0 3 1201 2405 99 86 21 chr1 80745615 80745987 -116449445 + MTA_Mm LTR MaLR 1 396 0 3 1201 241 330 111 4 chr1 80746222 80746401 -116449031 + MIR SINE MIR 22 222 -46 3 1201 242 311 45 57 chr1 80746607 80746764 -116448668 + MLT1K LTR MaLR 324 478 -117 3 1201 633 284 0 0 chr1 80746856 80746997 -116448435 - B1_Mur1 SINE Alu -7 142 2 3 1201 252 0 0 0 chr1 80747327 80747355 -116448077 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1201 225 0 0 0 chr1 80747355 80747379 -116448053 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1201 345 200 89 0 chr1 80747536 80747626 -116447806 - MLT1A LTR MaLR -7 367 270 3 1201 295 351 72 83 chr1 80747671 80747851 -116447581 - MLT1A LTR MaLR -192 182 5 3 1201 2870 49 3 0 chr1 80747987 80748332 -116447100 + ORR1A1 LTR MaLR 1 346 0 3 1201 363 315 55 0 chr1 80748359 80748486 -116446946 - MER5A1 DNA MER1_type -6 160 27 3 1201 423 333 50 118 chr1 80749503 80749867 -116445565 + MTEa LTR MaLR 13 351 -28 3 1201 2101 127 12 12 chr1 80750024 80750351 -116445081 + ORR1A2 LTR MaLR 1 327 0 3 1201 656 303 40 15 chr1 80750538 80750739 -116444693 + B3 SINE B2 1 206 -10 3 1201 198 0 0 0 chr1 80752627 80752649 -116442783 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1201 360 0 0 0 chr1 80752940 80752980 -116442452 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1201 1125 155 26 48 chr1 80753209 80753439 -116441993 - URR1B DNA MER1_type 0 225 1 3 1201 801 274 37 33 chr1 80756416 80756711 -116438721 - MTD LTR MaLR -7 414 15 3 1201 432 256 35 70 chr1 80756964 80757107 -116438325 - MTD LTR MaLR -6 413 276 3 1201 210 91 0 0 chr1 80757280 80757313 -116438119 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 3 1201 582 314 76 12 chr1 80757313 80757342 -116438090 - B3 SINE B2 -34 182 155 3 1201 306 0 0 0 chr1 80757342 80757376 -116438056 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1201 582 314 76 12 chr1 80757376 80757517 -116437915 - B3 SINE B2 -62 154 1 3 1201 1423 244 43 59 chr1 80757624 80757998 -116437434 + MTE2b LTR MaLR 1 368 -11 3 1201 417 198 0 0 chr1 80758435 80758531 -116436901 + CT-rich Low_complexity Low_complexity 1 96 0 3 1201 897 220 60 0 chr1 80758786 80758986 -116436446 + MTD LTR MaLR 206 417 -2 3 1201 351 0 0 0 chr1 80759731 80759770 -116435662 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1201 240 300 103 18 chr1 80760130 80760354 -116435078 - L1M5 LINE L1 -2384 3762 3520 3 1201 434 348 39 28 chr1 80761191 80761475 -116433957 + B4A SINE B4 2 288 -4 3 1201 378 0 0 0 chr1 80761527 80761569 -116433863 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1201 1124 117 0 11 chr1 80763269 80763451 -116431981 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1201 924 134 5 27 chr1 80763463 80763614 -116431818 + polypyrimidine Low_complexity Low_complexity 34 180 0 3 1201 1019 144 0 11 chr1 80763614 80763796 -116431636 + CT-rich Low_complexity Low_complexity 1 180 0 3 1201 924 134 5 27 chr1 80763796 80763828 -116431604 + polypyrimidine Low_complexity Low_complexity 2 33 0 3 1201 194 246 16 0 chr1 80763828 80763889 -116431543 + CT-rich Low_complexity Low_complexity 2 63 0 3 1201 1520 122 4 12 chr1 80763889 80764137 -116431295 - L1_Mus3 LINE L1 -2 6636 6391 3 1201 430 279 143 13 chr1 80764216 80764607 -116430825 + L1_Mur3 LINE L1 5118 5596 -701 3 1201 231 61 0 0 chr1 80764817 80764850 -116430582 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 1201 320 294 142 39 chr1 80765547 80765752 -116429680 + L1M5 LINE L1 4373 4598 -1548 3 1201 718 198 24 12 chr1 80766186 80766393 -116429039 + RLTR25A LTR ERVK 1 173 -930 3 1201 189 0 0 0 chr1 80766412 80766433 -116428999 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1201 2027 172 19 11 chr1 80767695 80768059 -116427373 + ORR1B2 LTR MaLR 1 367 0 3 1201 289 303 55 63 chr1 80768630 80768812 -116426620 - MLT1F2 LTR MaLR 0 569 389 3 1201 252 187 42 59 chr1 80768837 80768927 -116426505 - MLT1F2 LTR MaLR -13 395 267 3 1201 582 24 36 0 chr1 80769017 80769101 -116426331 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 1201 273 330 78 0 chr1 80769257 80769360 -116426072 - MLT1F2 LTR MaLR -392 168 58 3 1201 516 77 0 0 chr1 80769697 80769775 -116425657 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1201 378 0 0 0 chr1 80769818 80769860 -116425572 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 3 1201 414 55 18 0 chr1 80770726 80770781 -116424651 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1201 645 199 0 0 chr1 80770781 80770947 -116424485 + GA-rich Low_complexity Low_complexity 1 166 0 3 1201 770 327 29 7 chr1 80771119 80771393 -116424039 - B4A SINE B4 -12 280 1 3 1201 2807 76 3 3 chr1 80771536 80771904 -116423528 + L1_Mus2 LINE L1 6181 6548 -18 3 1201 249 120 47 24 chr1 80772713 80772798 -116422634 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 3 1201 483 63 0 0 chr1 80772824 80772887 -116422545 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1201 1109 92 0 0 chr1 80772887 80773029 -116422403 - B1_Mus1 SINE Alu -5 143 2 3 1201 386 299 0 17 chr1 80773362 80773481 -116421951 - PB1D10 SINE Alu 0 117 1 3 1201 395 287 41 77 chr1 80774107 80774277 -116421155 - RSINE1 SINE B4 0 165 2 3 1201 8661 28 0 0 chr1 80775502 80776601 -116418831 - L1_Mm LINE L1 -3047 2836 1738 3 1201 4034 47 0 0 chr1 80776602 80777089 -116418343 + L1Md_T LINE L1 6096 6582 0 3 1201 21 0 0 0 chr1 80777260 80777281 -116418151 + AT_rich Low_complexity Low_complexity 1 21 0 3 1201 495 332 117 0 chr1 80777483 80777757 -116417675 - Lx8 LINE L1 -244 7229 6924 3 1201 188 342 40 0 chr1 80779024 80779100 -116416332 + L2a LINE L2 3348 3426 0 3 1201 455 48 16 0 chr1 80779115 80779177 -116416255 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1201 234 171 0 0 chr1 80779193 80779263 -116416169 + GA-rich Low_complexity Low_complexity 1 70 0 3 1201 183 268 0 51 chr1 80779945 80780004 -116415428 - L3 LINE CR1 -2404 2085 2030 3 1201 514 298 121 13 chr1 80781040 80781353 -116414079 + L1MD2 LINE L1 5629 5975 -384 3 1201 231 243 26 26 chr1 80781505 80781581 -116413851 + L1MD2 LINE L1 6187 6262 -97 3 1201 414 234 0 0 chr1 80781634 80781711 -116413721 - ID4 SINE ID -3 80 4 3 1201 299 292 93 9 chr1 80781756 80781863 -116413569 - B1F SINE Alu -10 139 24 3 1201 1017 223 32 35 chr1 80782002 80782486 -116412946 + Lx3_Mus LINE L1 37 906 -6078 3 1201 30759 88 28 8 chr1 80782473 80788582 -116406850 + Lx3_Mus LINE L1 752 7001 -8 3 1201 306 123 0 0 chr1 80788595 80788652 -116406780 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1201 258 319 42 11 chr1 80789107 80789202 -116406230 - MLT1K LTR MaLR -28 567 470 4 1201 1137 167 71 0 chr1 80789417 80789627 -116405805 - URR1B DNA MER1_type 0 225 1 4 1201 288 342 9 43 chr1 80790670 80790786 -116404646 - MTEb LTR MaLR -8 371 260 4 1201 1390 231 58 65 chr1 80790937 80791345 -116404087 + MTE2b LTR MaLR 1 372 -7 4 1201 356 229 34 67 chr1 80791342 80791431 -116404001 - ORR1E LTR MaLR -273 86 1 4 1201 202 320 0 0 chr1 80792122 80792197 -116403235 + (TGAA)n Simple_repeat Simple_repeat 2 76 0 4 1201 950 306 36 11 chr1 80792579 80792696 -116402736 + B4A SINE B4 7 130 -162 4 1201 369 0 0 0 chr1 80792696 80792737 -116402695 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 4 1201 950 306 36 11 chr1 80792737 80792896 -116402536 + B4A SINE B4 131 289 -3 4 1201 24 0 0 0 chr1 80793029 80793053 -116402379 + AT_rich Low_complexity Low_complexity 1 24 0 4 1201 1794 214 100 3 chr1 80794073 80794444 -116400988 + MTB_Mm LTR MaLR 1 407 0 4 1201 587 225 121 63 chr1 80794796 80795019 -116400413 + RLTR14 LTR ERV1 147 382 0 4 1201 345 136 0 0 chr1 80795563 80795571 -116399861 + (GAA)n Simple_repeat Simple_repeat 1 8 0 4 1201 1200 111 0 0 chr1 80795571 80795751 -116399681 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1201 345 136 0 0 chr1 80795751 80795801 -116399631 + (GAA)n Simple_repeat Simple_repeat 3 52 0 4 1201 515 16 16 0 chr1 80797952 80798016 -116397416 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1201 22 0 0 0 chr1 80798456 80798478 -116396954 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 310 357 85 27 chr1 80798660 80798954 -116396478 + LTR33A LTR ERVL 201 511 -9 4 1201 351 0 0 0 chr1 80799502 80799541 -116395891 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1201 21 36 0 0 chr1 80800512 80800540 -116394892 + AT_rich Low_complexity Low_complexity 1 28 0 4 1201 306 311 17 71 chr1 80800751 80800907 -116394525 + PB1D7 SINE Alu 1 141 -8 4 1201 213 156 22 22 chr1 80801388 80801434 -116393998 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1201 4014 206 89 12 chr1 80801517 80802449 -116392983 - RMER1B Other Other -18 1048 45 4 1201 381 350 69 40 chr1 80802642 80802988 -116392444 - L1MC4 LINE L1 -993 7049 6694 4 1201 858 179 15 0 chr1 80803007 80803141 -116392291 + B1_Mur3 SINE Alu 5 140 -9 4 1201 387 0 0 0 chr1 80803141 80803184 -116392248 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1201 411 21 0 0 chr1 80803184 80803231 -116392201 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1201 204 125 0 0 chr1 80804974 80805006 -116390426 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1201 246 62 0 0 chr1 80805459 80805491 -116389941 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 1201 773 260 52 59 chr1 80805555 80805825 -116389607 - MLT1A0 LTR MaLR -97 268 1 4 1201 1304 152 13 22 chr1 80805904 80806132 -116389300 - URR1A DNA MER1_type 0 226 1 4 1201 309 361 25 90 chr1 80806293 80806494 -116388938 - MT2A LTR ERVL -219 314 127 4 1201 2275 160 26 14 chr1 80806675 80807099 -116388333 - Lx LINE L1 0 6654 6226 4 1201 236 239 25 0 chr1 80807296 80807459 -116387973 + CT-rich Low_complexity Low_complexity 2 168 0 4 1201 827 310 45 25 chr1 80807462 80807862 -116387570 - Lx8 LINE L1 -251 7222 6815 4 1201 7139 46 12 28 chr1 80807913 80808891 -116386541 - L1Md_F2 LINE L1 -1 6581 5619 4 1201 184 336 44 81 chr1 80809507 80809643 -116385789 - MIR3 SINE MIR -64 144 14 4 1201 30 0 0 0 chr1 80810032 80810062 -116385370 + AT_rich Low_complexity Low_complexity 1 30 0 4 1201 22 35 0 0 chr1 80810350 80810379 -116385053 + AT_rich Low_complexity Low_complexity 1 29 0 4 1201 722 301 92 12 chr1 80810387 80810590 -116384842 + Lx8 LINE L1 6809 7021 -452 4 1201 606 28 0 0 chr1 80810590 80810662 -116384770 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1201 722 301 92 12 chr1 80810662 80810804 -116384628 + Lx8 LINE L1 7022 7181 -292 4 1201 244 322 45 11 chr1 80811011 80811099 -116384333 + MER81 DNA AcHobo 2 92 -22 4 1201 1367 147 0 26 chr1 80811117 80811348 -116384084 - URR1B DNA MER1_type 0 225 1 4 1201 21 57 0 0 chr1 80812135 80812170 -116383262 + AT_rich Low_complexity Low_complexity 1 35 0 4 1201 23 0 0 0 chr1 80812390 80812413 -116383019 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 270 0 0 0 chr1 80813556 80813586 -116381846 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1201 2524 136 11 41 chr1 80813803 80814262 -116381170 - Lx2 LINE L1 -675 6322 5878 4 1201 4823 92 12 1 chr1 80814262 80814923 -116380509 + Lx2 LINE L1 6329 6996 -1 4 1201 1112 309 66 53 chr1 80815584 80816055 -116379377 - RMER5 LTR ERV1 -57 477 1 4 1201 360 0 0 0 chr1 80816800 80816840 -116378592 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1201 642 13 0 0 chr1 80817105 80817180 -116378252 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 4 1201 248 335 86 29 chr1 80817328 80817503 -116377929 + MIRb SINE MIR 81 265 -3 4 1201 310 125 12 48 chr1 80818187 80818271 -116377161 + CT-rich Low_complexity Low_complexity 2 82 0 4 1201 181 273 61 0 chr1 80818671 80818737 -116376695 + L2c LINE L2 3238 3307 -80 4 1201 551 209 132 0 chr1 80819491 80819620 -116375812 - B1_Mur2 SINE Alu -2 147 2 4 1201 867 141 56 0 chr1 80820966 80821108 -116374324 - B1_Mur4 SINE Alu 0 150 1 4 1201 894 122 0 0 chr1 80821192 80821372 -116374060 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1201 382 287 35 0 chr1 80822528 80822615 -116372817 - ID_B1 SINE B4 -43 181 92 4 1201 537 16 0 0 chr1 80822850 80822912 -116372520 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1201 382 340 163 30 chr1 80822922 80823328 -116372104 + Charlie25 DNA MER1_type 718 1177 -1347 4 1201 231 167 0 0 chr1 80824164 80824206 -116371226 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1201 412 284 0 0 chr1 80824628 80824723 -116370709 - B1F SINE Alu -48 101 7 4 1201 435 306 18 0 chr1 80824904 80825015 -116370417 - ID_B1 SINE B4 -110 114 2 4 1201 287 275 36 9 chr1 80825028 80825138 -116370294 + L1M2 LINE L1 4353 4465 -1678 4 1201 645 14 0 0 chr1 80825303 80825377 -116370055 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1201 263 154 38 25 chr1 80825410 80825490 -116369942 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 4 1201 1742 154 99 29 chr1 80826082 80826464 -116368968 - RLTR9E LTR ERVK 0 409 1 4 1201 2143 254 46 9 chr1 80826470 80827064 -116368368 + Lx5 LINE L1 6454 7050 0 4 1201 201 175 0 0 chr1 80827255 80827295 -116368137 + CT-rich Low_complexity Low_complexity 2 41 0 4 1201 180 314 42 14 chr1 80828525 80828596 -116366836 - L2c LINE L2 -155 3232 3160 4 1201 1359 42 0 0 chr1 80829295 80829462 -116365970 - L1_Mus1 LINE L1 -248 6319 6153 4 1201 1962 49 0 31 chr1 80829463 80829718 -116365714 + L1_Mus1 LINE L1 6320 6566 -1 4 1201 342 304 14 7 chr1 80829785 80829924 -116365508 - L1MA6 LINE L1 -246 6054 5915 4 1201 22 0 0 0 chr1 80830532 80830554 -116364878 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 468 0 0 0 chr1 80830598 80830650 -116364782 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1201 725 218 63 0 chr1 80830651 80830793 -116364639 - B3A SINE B2 -46 152 2 4 1201 1144 205 186 37 chr1 80830819 80831173 -116364259 + MTC LTR MaLR 1 407 -14 4 1201 568 306 39 58 chr1 80831140 80831348 -116364084 + B4 SINE B4 87 290 -2 4 1201 204 62 62 0 chr1 80831351 80831383 -116364049 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 4 1201 681 149 23 11 chr1 80831443 80831620 -116363812 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1201 25 0 0 0 chr1 80831872 80831897 -116363535 + AT_rich Low_complexity Low_complexity 1 25 0 4 1201 701 300 53 112 chr1 80832395 80832680 -116362752 + B4A SINE B4 5 272 -20 4 1201 201 94 0 0 chr1 80833026 80833058 -116362374 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 4 1201 25 75 0 0 chr1 80833193 80833246 -116362186 + AT_rich Low_complexity Low_complexity 1 53 0 4 1201 351 332 52 77 chr1 80833261 80833291 -116362141 - MLT1C LTR MaLR -2 465 441 4 1201 1270 83 39 6 chr1 80833291 80833472 -116361960 - B2_Mm2 SINE B2 -8 187 1 4 1201 351 332 52 77 chr1 80833472 80833728 -116361704 - MLT1C LTR MaLR -27 440 186 4 1201 449 111 25 0 chr1 80833987 80834068 -116361364 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 4 1201 324 0 0 0 chr1 80835144 80835180 -116360252 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1201 4883 171 39 8 chr1 80835617 80836236 -116359196 - RMER17B LTR ERVK 0 958 307 4 1201 522 0 0 0 chr1 80836236 80836294 -116359138 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1201 4883 171 39 8 chr1 80836294 80836602 -116358830 - RMER17B LTR ERVK -652 306 3 4 1201 525 331 116 50 chr1 80837521 80838004 -116357428 - RMER20A LTR ERVK 0 516 2 4 1201 243 0 0 0 chr1 80838438 80838465 -116356967 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1201 351 0 0 0 chr1 80838465 80838503 -116356929 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1201 375 195 61 0 chr1 80838520 80838602 -116356830 + B1_Mur2 SINE Alu 58 144 -5 4 1201 634 258 96 29 chr1 80838586 80838784 -116356648 + MTD LTR MaLR 186 403 -18 4 1201 612 0 0 0 chr1 80838840 80838908 -116356524 + (TTC)n Simple_repeat Simple_repeat 3 70 0 4 1201 21 0 0 0 chr1 80839149 80839170 -116356262 + AT_rich Low_complexity Low_complexity 1 21 0 4 1201 213 132 0 0 chr1 80839190 80839228 -116356204 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1201 7664 69 3 2 chr1 80839230 80840299 -116355133 - L1Md_F2 LINE L1 -12 6570 5501 4 1201 1084 206 35 0 chr1 80840553 80840752 -116354680 + Lx9 LINE L1 6426 6631 -1013 4 1201 314 292 34 62 chr1 80841156 80841302 -116354130 + MLT1H LTR MaLR 381 522 -27 4 1201 426 324 52 17 chr1 80841374 80841651 -116353781 + L2a LINE L2 2863 3153 -273 4 1201 363 44 0 0 chr1 80842003 80842048 -116353384 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1201 1105 130 113 5 chr1 80842187 80842371 -116353061 + Lx3A LINE L1 6762 6966 -15 5 1201 216 0 0 0 chr1 80842371 80842395 -116353037 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 1201 622 242 68 0 chr1 80844801 80844933 -116350499 + B1_Mur1 SINE Alu 1 141 -8 5 1201 250 195 23 0 chr1 80845050 80845137 -116350295 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 1201 276 351 70 9 chr1 80845193 80845308 -116350124 + MIRb SINE MIR 7 128 -140 5 1201 215 108 0 51 chr1 80845757 80845796 -116349636 - MIRc SINE MIR -22 246 210 5 1201 25 31 0 0 chr1 80845919 80845951 -116349481 + AT_rich Low_complexity Low_complexity 1 32 0 5 1201 234 91 0 0 chr1 80846021 80846054 -116349378 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1201 293 321 49 0 chr1 80846324 80846405 -116349027 - B4A SINE B4 -117 175 91 5 1201 2604 114 15 5 chr1 80846407 80846811 -116348621 - Lx LINE L1 -4 6650 6243 5 1201 22 0 0 0 chr1 80846879 80846901 -116348531 + AT_rich Low_complexity Low_complexity 1 22 0 5 1201 2203 72 0 0 chr1 80846920 80847198 -116348234 - L1_Mus1 LINE L1 -3 6564 6287 5 1201 288 120 0 0 chr1 80847260 80847310 -116348122 + (CCA)n Simple_repeat Simple_repeat 2 51 0 5 1201 624 326 42 0 chr1 80847317 80847510 -116347922 + B4A SINE B4 92 292 0 5 1201 23 33 0 0 chr1 80847688 80847718 -116347714 + AT_rich Low_complexity Low_complexity 1 30 0 5 1201 468 0 0 0 chr1 80851522 80851574 -116343858 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1201 413 307 31 18 chr1 80853112 80853346 -116342086 - ERVL-E-int LTR ERVL -1167 4547 4254 5 1201 336 24 0 0 chr1 80853392 80853433 -116341999 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1201 378 263 72 43 chr1 80853458 80853597 -116341835 + HAL1-3A_ME LINE L1 1976 2118 -740 5 1201 396 292 17 80 chr1 80853661 80853836 -116341596 - ERVL-E-int LTR ERVL -2141 3526 3363 5 1201 1773 144 149 9 chr1 80853875 80854197 -116341235 - ORR1B2 LTR MaLR 0 367 1 5 1201 564 15 0 0 chr1 80854326 80854391 -116341041 + (TTTC)n Simple_repeat Simple_repeat 1 65 0 5 1201 1056 307 39 6 chr1 80854401 80854735 -116340697 + MTE2b LTR MaLR 1 345 -34 5 1201 688 266 60 32 chr1 80855342 80855381 -116340051 + RLTR31_Mur LTR ERVK 50 88 -465 5 1201 342 0 0 0 chr1 80855381 80855419 -116340013 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1201 688 266 60 32 chr1 80855419 80855662 -116339770 + RLTR31_Mur LTR ERVK 89 340 -213 5 1201 225 255 213 0 chr1 80855666 80855760 -116339672 + L1M2 LINE L1 4939 5052 -1091 5 1201 446 373 35 0 chr1 80855783 80855925 -116339507 + RSINE1 SINE B4 2 148 -17 5 1201 253 218 25 25 chr1 80855965 80856045 -116339387 + (CAGAGA)n Simple_repeat Simple_repeat 3 82 0 5 1201 6729 36 2 0 chr1 80857868 80858667 -116336765 + L1Md_F3 LINE L1 5775 6575 -9 5 1201 1224 104 11 21 chr1 80859569 80859756 -116335676 - B2_Mm1t SINE B2 -7 186 2 5 1201 2249 78 19 6 chr1 80859789 80860100 -116335332 - L1_Mus1 LINE L1 0 6567 6253 5 1201 538 292 46 70 chr1 80861622 80861906 -116333526 - MER33 DNA MER1_type 0 324 48 5 1201 439 366 0 7 chr1 80862467 80862602 -116332830 + B4 SINE B4 153 286 -6 5 1201 204 97 0 0 chr1 80862612 80862643 -116332789 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1201 547 146 15 0 chr1 80862643 80862773 -116332659 + GA-rich Low_complexity Low_complexity 1 132 0 5 1201 879 260 72 9 chr1 80864244 80864465 -116330967 - MTD LTR MaLR -14 405 171 5 1201 440 259 107 7 chr1 80864591 80864731 -116330701 + L1MD1 LINE L1 6078 6231 -11 5 1201 760 194 110 171 chr1 80864912 80865099 -116330333 + ORR1D1 LTR MaLR 5 183 -191 5 1201 333 62 0 0 chr1 80865099 80865147 -116330285 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 5 1201 760 194 110 171 chr1 80865147 80865351 -116330081 + ORR1D1 LTR MaLR 184 372 -2 5 1201 777 322 70 6 chr1 80865446 80865802 -116329630 - MTE2a LTR MaLR 0 379 1 5 1201 497 296 133 0 chr1 80865926 80866061 -116329371 + RSINE1 SINE B4 11 163 -2 5 1201 2598 300 44 31 chr1 80867462 80868443 -116326989 + Lx8 LINE L1 6475 7468 -5 5 1201 21 57 0 0 chr1 80869258 80869293 -116326139 + AT_rich Low_complexity Low_complexity 1 35 0 5 1201 301 111 0 0 chr1 80869929 80869974 -116325458 + RMER19C LTR ERVK 567 611 0 5 1202 284 323 220 21 chr1 80871661 80871953 -116323479 + Charlie1a DNA MER1_type 46 395 -1060 5 1202 456 311 146 45 chr1 80871990 80872434 -116322998 + Charlie1a DNA MER1_type 535 1023 -432 5 1202 195 42 0 0 chr1 80872434 80872458 -116322974 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1202 31751 63 2 70 chr1 80872559 80875295 -116320137 + L1Md_A LINE L1 654 3008 -2875 5 1202 8196 37 2 2 chr1 80875295 80876292 -116319140 + L1Md_F3 LINE L1 5588 6584 0 5 1202 31751 54 1 78 chr1 80876292 80878877 -116316555 + L1Md_A LINE L1 3009 5584 -299 5 1202 4806 44 0 2 chr1 80878879 80879466 -116315966 + L1Md_F3 LINE L1 5986 6571 -13 5 1202 1289 280 102 29 chr1 80879741 80880223 -116315209 - Lx8 LINE L1 -117 7356 6840 5 1202 1642 312 33 12 chr1 80880263 80880776 -116314656 - Lx8 LINE L1 -742 6731 6208 5 1202 648 0 0 0 chr1 80880788 80880860 -116314572 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1202 222 171 0 0 chr1 80882382 80882423 -116313009 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 5 1202 251 257 0 0 chr1 80882423 80882497 -116312935 + GA-rich Low_complexity Low_complexity 1 74 0 5 1202 250 333 65 39 chr1 80883078 80883231 -116312201 - MLT1L LTR MaLR -58 552 396 5 1202 294 316 71 90 chr1 80883641 80884195 -116311237 - L1M5 LINE L1 -367 5812 5255 5 1202 228 289 118 0 chr1 80884315 80884391 -116311041 + MLT1B LTR MaLR 298 382 -8 5 1202 301 271 50 56 chr1 80884403 80884563 -116310869 - L1MC LINE L1 -1226 4920 4762 5 1202 180 0 0 0 chr1 80884761 80884781 -116310651 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1202 531 153 0 0 chr1 80884915 80885013 -116310419 + T-rich Low_complexity Low_complexity 1 98 0 5 1202 1003 116 14 0 chr1 80885013 80885160 -116310272 - B1_Mur4 SINE Alu 0 150 2 5 1202 225 0 0 0 chr1 80885179 80885204 -116310228 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1202 1025 69 8 0 chr1 80885204 80885335 -116310097 - B1_Mus2 SINE Alu -12 135 4 5 1202 395 110 13 27 chr1 80885339 80885414 -116310018 - Lx LINE L1 -24 6630 6557 5 1202 266 143 0 0 chr1 80885936 80885978 -116309454 + MT2A LTR ERVL 5 46 -487 5 1202 351 62 0 0 chr1 80886198 80886246 -116309186 - B2_Mm1a SINE B2 -19 174 127 5 1202 1244 90 23 0 chr1 80886310 80886487 -116308945 - B2_Mm2 SINE B2 -14 181 1 5 1202 371 308 83 0 chr1 80887551 80887684 -116307748 + Lx8 LINE L1 7194 7337 -136 5 1202 473 161 0 0 chr1 80888057 80888150 -116307282 - Lx2 LINE L1 -2 6995 6903 5 1202 21 0 0 0 chr1 80890435 80890456 -116304976 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 1147 144 19 5 chr1 80891680 80891890 -116303542 + Lx2 LINE L1 6785 6997 0 5 1202 261 308 153 27 chr1 80892492 80892642 -116302790 + MER5A DNA MER1_type 16 184 -5 5 1202 4568 49 0 0 chr1 80892739 80893289 -116302143 - L1Md_F2 LINE L1 -15 6567 6018 5 1202 241 281 132 35 chr1 80893300 80893444 -116301988 - MER63D DNA AcHobo -828 233 76 5 1202 1107 159 63 0 chr1 80893476 80893683 -116301749 - Lx LINE L1 -103 6551 6332 5 1202 541 151 0 9 chr1 80893683 80893790 -116301642 + Lx LINE L1 6549 6654 0 5 1202 843 86 0 0 chr1 80894004 80894121 -116301311 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 5 1202 437 182 10 0 chr1 80894130 80894229 -116301203 + CT-rich Low_complexity Low_complexity 3 102 0 5 1202 254 308 24 49 chr1 80895193 80895275 -116300157 - ID4 SINE ID -2 81 2 5 1202 43 0 0 0 chr1 80895486 80895529 -116299903 + AT_rich Low_complexity Low_complexity 1 43 0 5 1202 465 19 0 0 chr1 80895628 80895682 -116299750 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1202 248 234 0 0 chr1 80896322 80896369 -116299063 + B3 SINE B2 1 47 -169 5 1202 471 48 16 0 chr1 80896369 80896431 -116299001 - Lx2 LINE L1 -589 6408 6346 5 1202 1380 119 25 0 chr1 80896431 80896633 -116298799 + Lx2 LINE L1 6437 6643 -354 5 1202 1398 122 9 5 chr1 80896633 80896855 -116298577 + Lx2 LINE L1 6775 6997 0 5 1202 392 272 67 42 chr1 80896872 80896991 -116298441 + B3 SINE B2 69 190 -26 5 1202 327 25 0 0 chr1 80896991 80897031 -116298401 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1202 315 122 0 0 chr1 80897031 80897079 -116298353 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1202 577 276 122 22 chr1 80899577 80899807 -116295625 - MER21B LTR ERV1 -99 764 512 5 1202 3410 213 72 11 chr1 80899828 80900577 -116294855 + Lx6 LINE L1 6264 7058 -402 5 1202 182 62 0 30 chr1 80900577 80900610 -116294822 + (ACTG)n Simple_repeat Simple_repeat 4 35 0 5 1202 326 304 71 0 chr1 80900650 80900762 -116294670 + Lx7 LINE L1 7189 7308 -388 5 1202 27 0 0 0 chr1 80900983 80901010 -116294422 + AT_rich Low_complexity Low_complexity 1 27 0 5 1202 1784 304 97 11 chr1 80901083 80901794 -116293638 + Lx9 LINE L1 6251 7022 -622 5 1202 589 268 43 0 chr1 80902499 80902637 -116292795 + B1F1 SINE Alu 6 149 0 5 1202 235 294 82 71 chr1 80902513 80902696 -116292736 - YREP_Mm Unknown Unknown -1515 297 113 5 1202 438 20 0 0 chr1 80903733 80903784 -116291648 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1202 394 299 9 45 chr1 80903877 80903989 -116291443 - RSINE1 SINE B4 -56 109 2 5 1202 21 0 0 0 chr1 80904142 80904163 -116291269 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 1790 187 67 11 chr1 80904523 80904896 -116290536 + ORR1B1 LTR MaLR 1 394 0 5 1202 199 0 31 31 chr1 80906012 80906044 -116289388 + (CATA)n Simple_repeat Simple_repeat 1 32 0 5 1202 218 301 85 42 chr1 80906706 80906824 -116288608 + MIRc SINE MIR 52 174 -94 5 1202 256 279 67 0 chr1 80906993 80907097 -116288335 + L1ME1 LINE L1 5850 5960 -219 5 1202 294 106 0 0 chr1 80907153 80907200 -116288232 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1202 239 276 13 13 chr1 80907205 80907282 -116288150 + (TATG)n Simple_repeat Simple_repeat 3 79 0 5 1202 429 341 22 11 chr1 80908452 80908636 -116286796 + LTR16B2 LTR ERVL 271 456 -6 5 1202 1141 259 173 8 chr1 80908929 80909305 -116286127 - Lx5 LINE L1 -20 7038 6555 6 1202 867 106 0 0 chr1 80909333 80909484 -116285948 + (GA)n Simple_repeat Simple_repeat 2 152 0 6 1202 224 164 44 15 chr1 80909526 80909594 -116285838 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 6 1202 27 29 0 0 chr1 80910230 80910264 -116285168 + AT_rich Low_complexity Low_complexity 1 34 0 6 1202 4216 129 103 11 chr1 80910442 80911227 -116284205 + L1_Mur1 LINE L1 4739 5595 -291 6 1202 1879 208 71 19 chr1 80911271 80911752 -116283680 - RLTR11A LTR ERVK -7 521 1 6 1202 5543 126 41 27 chr1 80912719 80914406 -116281026 + L1VL1 LINE L1 190 1901 -1797 6 1202 8073 58 0 3 chr1 80914404 80915827 -116279605 - L1Md_F2 LINE L1 -3 6579 5162 6 1202 7405 118 1 7 chr1 80915827 80916976 -116278456 + L1VL1 LINE L1 1910 3051 -647 6 1202 5849 143 62 2 chr1 80916955 80918504 -116276928 + L1_Mus4 LINE L1 4985 6633 -3 6 1202 288 0 0 0 chr1 80918681 80918713 -116276719 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1202 923 41 98 0 chr1 80918713 80918835 -116276597 - B1_Mm SINE Alu -13 134 1 6 1202 180 0 0 0 chr1 80919805 80919825 -116275607 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1202 381 43 0 0 chr1 80919882 80919929 -116275503 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 6 1202 213 175 0 0 chr1 80919929 80919969 -116275463 + GA-rich Low_complexity Low_complexity 2 41 0 6 1202 879 259 5 9 chr1 80920245 80920459 -116274973 - B3 SINE B2 -2 214 2 6 1202 30 27 0 0 chr1 80920459 80920496 -116274936 + AT_rich Low_complexity Low_complexity 1 37 0 6 1202 220 326 33 22 chr1 80920605 80920696 -116274736 + L2a LINE L2 3335 3426 0 6 1202 439 302 107 67 chr1 80921255 80921582 -116273850 + ORR1E LTR MaLR 1 340 -19 6 1202 1812 28 0 0 chr1 80923130 80923348 -116272084 - L1Md_F2 LINE L1 -421 5462 5245 6 1202 1419 19 0 0 chr1 80923348 80923508 -116271924 + L1Md_F2 LINE L1 5427 5586 -297 6 1202 7766 55 2 14 chr1 80923508 80924513 -116270919 + L1Md_F2 LINE L1 5587 6579 -3 6 1202 180 135 0 0 chr1 80924519 80924556 -116270876 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1202 207 191 21 0 chr1 80925060 80925107 -116270325 - MIR SINE MIR -108 154 107 6 1202 25 31 0 0 chr1 80925146 80925178 -116270254 + AT_rich Low_complexity Low_complexity 1 32 0 6 1202 21 0 0 0 chr1 80926597 80926618 -116268814 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 28 71 0 0 chr1 80926741 80926797 -116268635 + AT_rich Low_complexity Low_complexity 1 56 0 6 1202 405 334 113 32 chr1 80927347 80927656 -116267776 + MLT1E2 LTR MaLR 294 627 0 6 1202 326 287 143 26 chr1 80928830 80928984 -116266448 - HAL1-3A_ME LINE L1 -711 2147 1976 6 1202 504 0 0 0 chr1 80928984 80929040 -116266392 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1202 612 327 39 34 chr1 80929620 80929854 -116265578 - B4A SINE B4 -17 275 41 6 1202 213 94 0 0 chr1 80930301 80930333 -116265099 + (CAT)n Simple_repeat Simple_repeat 1 32 0 6 1202 1591 236 90 24 chr1 80930422 80930878 -116264554 + RMER19C LTR ERVK 126 611 0 6 1202 487 321 134 39 chr1 80931297 80931789 -116263643 - L1ME2z LINE L1 -179 6265 5727 6 1202 504 0 0 0 chr1 80931974 80932030 -116263402 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1202 351 259 53 24 chr1 80932274 80932483 -116262949 - L1MA4 LINE L1 -1679 5965 5749 6 1202 327 49 0 0 chr1 80932483 80932524 -116262908 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1202 288 0 0 0 chr1 80932526 80932558 -116262874 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1202 386 293 111 11 chr1 80932558 80932748 -116262684 - L1MA4 LINE L1 -503 5788 5580 6 1202 434 258 54 64 chr1 80933259 80933557 -116261875 - L1MA4 LINE L1 -713 5584 5290 6 1202 1151 178 14 14 chr1 80934329 80934551 -116260881 - URR1B DNA MER1_type -3 222 1 6 1202 278 354 107 33 chr1 80936015 80936409 -116259023 + Charlie4a DNA MER1_type 5 427 -81 6 1202 818 308 96 9 chr1 80936886 80937284 -116258148 + MLT1E3 LTR MaLR 168 609 -15 6 1202 729 79 0 0 chr1 80937350 80937451 -116257981 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 1202 228 366 24 31 chr1 80938058 80938185 -116257247 + MIRb SINE MIR 87 212 -56 6 1202 22 70 0 0 chr1 80938245 80938288 -116257144 + AT_rich Low_complexity Low_complexity 1 43 0 6 1202 231 114 0 0 chr1 80938437 80938472 -116256960 + (CTTA)n Simple_repeat Simple_repeat 4 38 0 6 1202 5172 179 40 27 chr1 80938472 80939508 -116255924 - Lx4B LINE L1 -22 7036 5988 6 1202 332 308 22 34 chr1 80939506 80939684 -116255748 - L1MA6 LINE L1 -124 6176 6001 6 1202 328 233 0 55 chr1 80940055 80940146 -116255286 - Lx9 LINE L1 -246 7398 7313 6 1202 1833 262 73 45 chr1 80940522 80941216 -116254216 - Lx9 LINE L1 -30 7614 6901 6 1202 1866 116 40 19 chr1 80941216 80941540 -116253892 + IAPEY_LTR LTR ERVK 55 385 0 6 1202 2163 265 34 20 chr1 80941558 80942120 -116253312 - Lx9 LINE L1 -756 6888 6319 6 1202 26 0 0 0 chr1 80942137 80942163 -116253269 + AT_rich Low_complexity Low_complexity 1 26 0 6 1202 21 0 0 0 chr1 80942205 80942226 -116253206 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 402 21 0 0 chr1 80942574 80942621 -116252811 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1202 891 103 0 0 chr1 80942621 80942775 -116252657 + (GA)n Simple_repeat Simple_repeat 2 156 0 6 1202 430 103 26 0 chr1 80943395 80943473 -116251959 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1202 311 272 177 34 chr1 80943568 80943743 -116251689 + L1MA4 LINE L1 5813 6012 -288 6 1202 1092 80 49 0 chr1 80943923 80944086 -116251346 - L1_Mus3 LINE L1 -7 6631 6461 6 1202 324 102 0 0 chr1 80944092 80944141 -116251291 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1202 305 274 104 3 chr1 80944162 80944290 -116251142 + L1MA7 LINE L1 6126 6262 -29 6 1202 306 106 0 0 chr1 80945148 80945195 -116250237 + (TTA)n Simple_repeat Simple_repeat 1 47 0 6 1202 22 0 0 0 chr1 80946935 80946957 -116248475 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 441 0 0 0 chr1 80947485 80947534 -116247898 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1202 225 83 0 0 chr1 80948811 80948847 -116246585 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1202 467 306 61 51 chr1 80948870 80949066 -116246366 + B3A SINE B2 1 198 0 6 1202 868 160 28 7 chr1 80949433 80949578 -116245854 + B1_Mur4 SINE Alu 3 150 0 6 1202 24 0 0 0 chr1 80951119 80951143 -116244289 + AT_rich Low_complexity Low_complexity 1 24 0 6 1202 1318 278 32 40 chr1 80951373 80951748 -116243684 + MTE2b LTR MaLR 7 378 -1 6 1202 1451 196 198 90 chr1 80952767 80953197 -116242235 + MT2A LTR ERVL 5 459 -74 6 1202 222 37 0 0 chr1 80953197 80953224 -116242208 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1202 564 89 0 0 chr1 80953224 80953302 -116242130 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1202 1451 196 198 90 chr1 80953302 80953346 -116242086 + MT2A LTR ERVL 460 529 -4 6 1202 857 281 20 95 chr1 80955914 80956260 -116239172 + MTEa LTR MaLR 1 320 -59 6 1202 503 349 82 32 chr1 80956616 80956897 -116238535 - LTR16C LTR ERVL -1 488 194 6 1202 652 267 0 0 chr1 80959890 80960025 -116235407 - B1_Mur1 SINE Alu -13 136 2 6 1202 189 0 0 0 chr1 80960892 80960913 -116234519 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1202 3086 234 59 3 chr1 80963161 80963871 -116231561 - Lx5 LINE L1 0 7050 6301 6 1202 1537 142 32 11 chr1 80963856 80964140 -116231292 + L1_Mur2 LINE L1 4892 5181 -696 6 1202 518 114 0 0 chr1 80964143 80964213 -116231219 + L1_Mur2 LINE L1 5459 5528 -349 6 1202 610 275 62 55 chr1 80964214 80964522 -116230910 + RLTR10D LTR ERVK 50 359 0 6 1202 1250 104 0 0 chr1 80964522 80964695 -116230737 + Lx4B LINE L1 5595 5767 -1291 6 1202 233 304 0 0 chr1 80964737 80964793 -116230639 + ID SINE ID 20 75 -149 6 1202 396 0 0 0 chr1 80965590 80965634 -116229798 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1202 1584 228 126 8 chr1 80965692 80966169 -116229263 + MT2A LTR ERVL 1 533 0 6 1202 253 36 71 18 chr1 80966418 80966474 -116228958 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1202 861 312 58 6 chr1 80967138 80967425 -116228007 + Lx8 LINE L1 6410 6702 -994 6 1202 415 289 8 30 chr1 80967536 80967668 -116227764 + MLT1D LTR MaLR 376 504 -1 6 1202 383 323 41 12 chr1 80968153 80968322 -116227110 + Lx8 LINE L1 7147 7320 -153 6 1202 22 0 0 0 chr1 80968407 80968429 -116227003 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 806 314 150 13 chr1 80968705 80969012 -116226420 + MTEa LTR MaLR 1 349 -30 6 1202 329 177 0 31 chr1 80969509 80969573 -116225859 - L1MA6 LINE L1 -100 6200 6139 6 1202 2523 251 53 42 chr1 80969573 80970377 -116225055 + Lx7 LINE L1 6884 7696 0 6 1202 6995 130 14 8 chr1 80970730 80972370 -116223062 + Lx LINE L1 5002 6650 -4 6 1202 360 0 0 0 chr1 80972413 80972453 -116222979 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1202 1002 96 0 7 chr1 80972453 80972590 -116222842 - B1_Mus1 SINE Alu -12 136 1 6 1202 519 310 91 34 chr1 80972678 80972730 -116222702 - B3A SINE B2 -2 214 164 6 1202 423 0 0 0 chr1 80972730 80972777 -116222655 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1202 519 289 140 28 chr1 80972777 80972928 -116222504 - B3A SINE B2 -25 173 1 6 1202 366 61 0 0 chr1 80973098 80973147 -116222285 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1202 4211 83 26 0 chr1 80973254 80973832 -116221600 + L1_Mus3 LINE L1 6046 6638 0 6 1202 2099 164 60 0 chr1 80975229 80975613 -116219819 + Lx2 LINE L1 6591 6997 0 6 1202 362 203 55 46 chr1 80977379 80977472 -116217960 - MTE2a LTR MaLR 0 419 287 6 1202 3460 15 5 0 chr1 80977475 80977869 -116217563 + MTA_Mm LTR MaLR 1 396 0 6 1202 9045 32 6 1 chr1 80977869 80978962 -116216470 + MTA_Mm-int LTR MaLR 1 1098 0 6 1202 3460 15 5 0 chr1 80978962 80979356 -116216076 + MTA_Mm LTR MaLR 1 396 0 6 1202 739 128 5 58 chr1 80979389 80979579 -116215853 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1202 571 274 32 25 chr1 80979634 80979791 -116215641 - MTE2a LTR MaLR -97 282 125 6 1202 2250 52 3 75 chr1 80979805 80980136 -116215296 - L1_Mus2 LINE L1 0 6566 6260 6 1202 1200 29 0 0 chr1 80980136 80980274 -116215158 + L1_Mus2 LINE L1 6108 6245 -321 6 1202 35402 35 1 0 chr1 80980354 80985963 -116209469 + L1Md_T LINE L1 1 5589 -297 6 1202 8971 6 0 0 chr1 80985963 80986959 -116208473 + L1Md_T LINE L1 5590 6585 0 6 1202 590 221 86 27 chr1 80987618 80987804 -116207628 + B3A SINE B2 2 198 0 6 1202 677 297 44 108 chr1 80988143 80988438 -116206994 - B4 SINE B4 -11 281 6 6 1202 471 306 99 85 chr1 80989061 80989415 -116206017 - ORR1E LTR MaLR 0 359 1 7 1202 231 369 33 66 chr1 80990335 80990518 -116204914 + MLT1K LTR MaLR 380 556 -39 7 1202 1971 56 4 0 chr1 80992069 80992551 -116202881 + L1_Mus1 LINE L1 6314 6567 0 7 1202 393 22 0 0 chr1 80992949 80992995 -116202437 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1202 330 336 47 0 chr1 80993000 80993149 -116202283 - Lx9 LINE L1 -182 7462 7307 7 1202 234 250 0 0 chr1 80993899 80993951 -116201481 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1202 276 320 64 24 chr1 80994515 80994640 -116200792 - ID_B1 SINE B4 -4 220 91 7 1202 1188 35 0 7 chr1 80994798 80994941 -116200491 + B1_Mus2 SINE Alu 1 142 -5 7 1202 460 203 7 76 chr1 80994944 80995088 -116200344 - Lx6 LINE L1 -18 7442 7309 7 1202 6762 75 10 3 chr1 80995171 80996105 -116199327 + ORR1A1-int LTR MaLR 853 1792 0 7 1202 1870 108 63 38 chr1 80996105 80996423 -116199009 + ORR1A1 LTR MaLR 1 326 -20 7 1202 756 303 83 56 chr1 80997046 80997455 -116197977 + ERVL-B4-int LTR ERVL 3391 3810 -1947 7 1202 713 298 155 17 chr1 80997507 80997797 -116197635 + ERVL-B4-int LTR ERVL 4162 4491 -1223 7 1202 1283 328 40 15 chr1 80997863 80998457 -116196975 + ERVL-B4-int LTR ERVL 4703 5311 -403 7 1202 737 218 97 24 chr1 80998506 80998713 -116196719 + Lx4B LINE L1 6833 7054 -4 7 1202 519 307 71 0 chr1 80999236 80999376 -116196056 + RSINE1 SINE B4 6 155 -10 7 1202 206 62 0 30 chr1 81000575 81000608 -116194824 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1202 1917 138 25 6 chr1 81000965 81001287 -116194145 + L1_Mus4 LINE L1 6304 6631 -5 2 1202 407 294 164 54 chr1 81001335 81001763 -116193669 + Tigger13a DNA MER2_type 45 519 -252 3 1202 22 0 0 0 chr1 81002287 81002309 -116193123 + AT_rich Low_complexity Low_complexity 1 22 0 4 150 790 258 4 79 chr1 81002316 81002569 -116192863 - Lx9 LINE L1 -1012 6632 6399 5 1203 637 243 69 11 chr1 81002812 81002996 -116192436 - Lx9 LINE L1 -1626 6018 5820 5 1203 249 196 0 0 chr1 81003029 81003080 -116192352 + (TATG)n Simple_repeat Simple_repeat 2 52 0 6 1203 1163 294 81 52 chr1 81003083 81003654 -116191778 + Lx9 LINE L1 6748 7334 -310 7 1203 1084 339 25 27 chr1 81004603 81005049 -116190383 - Lx8 LINE L1 -763 6710 6266 8 1203 1723 196 25 89 chr1 81005642 81006046 -116189386 + ORR1C1 LTR MaLR 1 378 0 9 1203 21 71 0 0 chr1 81006176 81006218 -116189214 + AT_rich Low_complexity Low_complexity 1 42 0 1 1203 404 276 69 42 chr1 81006923 81007112 -116188320 + L1ME1 LINE L1 2707 2900 -3246 1 1203 183 100 0 0 chr1 81007247 81007277 -116188155 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1203 342 98 0 0 chr1 81007277 81007327 -116188105 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1203 22 35 0 0 chr1 81007327 81007356 -116188076 + AT_rich Low_complexity Low_complexity 1 29 0 1 1203 7381 78 1 13 chr1 81007367 81007489 -116187943 - L1Md_F2 LINE L1 -12 6570 6459 1 1203 6702 63 44 11 chr1 81007489 81008416 -116187016 - RLTR13A2 LTR ERVK 0 958 1 1 1203 32711 81 31 5 chr1 81008416 81014240 -116181192 - L1Md_F2 LINE L1 -124 6458 481 1 1203 674 284 6 17 chr1 81014300 81014479 -116180953 - B4A SINE B4 0 292 116 1 1203 637 291 41 41 chr1 81014598 81014988 -116180444 + L1ME1 LINE L1 4040 4429 -1717 1 1203 743 308 85 35 chr1 81015283 81015880 -116179552 + L1ME1 LINE L1 5272 5897 -282 1 1203 296 345 17 0 chr1 81015927 81016043 -116179389 + (CATA)n Simple_repeat Simple_repeat 4 121 0 1 1203 455 0 18 0 chr1 81016044 81016099 -116179333 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1203 955 52 15 0 chr1 81016258 81016394 -116179038 + L1_Mus3 LINE L1 6496 6633 -5 2 1203 6466 77 2 8 chr1 81016551 81017513 -116177919 + L1Md_F2 LINE L1 5706 6582 0 2 1203 365 152 0 37 chr1 81018405 81018514 -116176918 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1203 1314 121 40 0 chr1 81018515 81018713 -116176719 - MTB_Mm LTR MaLR 0 407 202 2 1203 2971 145 10 6 chr1 81018707 81019206 -116176226 - MTB_Mm-int LTR MaLR -597 501 1 2 1203 2817 102 10 24 chr1 81019206 81019383 -116176049 - MTB_Mm LTR MaLR 0 407 233 2 1203 1708 60 0 0 chr1 81019383 81019599 -116175833 + L1Md_F2 LINE L1 6353 6568 -14 2 1203 2817 102 10 24 chr1 81019599 81019834 -116175598 - MTB_Mm LTR MaLR -175 232 1 2 1203 315 372 45 6 chr1 81019835 81019992 -116175440 - RSINE1 SINE B4 0 165 3 2 1203 25 0 0 0 chr1 81019994 81020019 -116175413 + AT_rich Low_complexity Low_complexity 1 25 0 2 1203 1009 237 105 10 chr1 81020562 81020856 -116174576 - Lx3C LINE L1 -2 6974 6653 2 1203 2012 81 0 37 chr1 81021754 81022048 -116173384 - L1Md_F2 LINE L1 -24 6558 6276 2 1203 306 0 0 0 chr1 81022048 81022082 -116173350 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1203 2982 126 13 6 chr1 81022258 81022730 -116172702 - Lx LINE L1 -6 6648 6174 3 1203 3234 129 112 0 chr1 81022743 81023294 -116172138 - L1_Mus1 LINE L1 -1 6566 5954 3 1203 4361 140 17 84 chr1 81023296 81023797 -116171635 - L1_Mm LINE L1 -75 5808 5360 3 1203 3892 100 34 7 chr1 81023797 81024383 -116171049 - Lx3_Mus LINE L1 0 7009 6408 3 1203 4361 140 17 84 chr1 81024383 81024746 -116170686 - L1_Mm LINE L1 -524 5359 5002 3 1203 861 278 141 22 chr1 81025482 81025843 -116169589 - MTD LTR MaLR -15 404 1 3 1203 430 333 85 0 chr1 81026626 81026791 -116168641 + ID_B1 SINE B4 18 196 -28 3 1203 725 310 5 18 chr1 81026832 81027049 -116168383 + B3 SINE B2 3 216 0 3 1203 381 319 71 65 chr1 81028074 81028195 -116167237 + B4A SINE B4 104 235 -57 3 1203 180 0 0 0 chr1 81028195 81028215 -116167217 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1203 381 319 71 65 chr1 81028215 81028261 -116167171 + B4A SINE B4 236 272 -20 3 1203 1252 102 17 6 chr1 81028797 81028975 -116166457 + B2_Mm2 SINE B2 2 181 -14 4 1203 493 288 22 43 chr1 81029023 81029035 -116166397 - B3A SINE B2 -17 181 171 4 1203 639 39 0 0 chr1 81029035 81029113 -116166319 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1203 493 288 22 43 chr1 81029113 81029285 -116166147 - B3A SINE B2 -28 170 1 4 1203 251 264 83 52 chr1 81030318 81030414 -116165018 - ORR1D1 LTR MaLR -17 357 259 4 1203 30 27 0 0 chr1 81030654 81030691 -116164741 + AT_rich Low_complexity Low_complexity 1 37 0 4 1203 474 201 35 2 chr1 81030734 81030849 -116164583 + MTD LTR MaLR 5 130 -266 4 1203 1363 247 52 13 chr1 81031033 81031341 -116164091 + MTD LTR MaLR 86 405 -14 4 1203 752 257 78 108 chr1 81031358 81031711 -116163721 + MTD-int LTR MaLR 3 430 -828 4 1203 2020 38 0 0 chr1 81031711 81031948 -116163484 - L1Md_F2 LINE L1 -738 5844 5608 4 1203 4262 68 0 42 chr1 81031948 81032544 -116162888 + L1Md_F2 LINE L1 6005 6575 -7 4 1203 1634 294 159 21 chr1 81032545 81033204 -116162228 + MTD-int LTR MaLR 388 1137 -121 4 1203 1141 48 7 13 chr1 81033204 81033353 -116162079 + B1_Mus1 SINE Alu 1 148 0 4 1203 968 187 5 37 chr1 81033408 81033501 -116161931 + Lx6 LINE L1 6491 6584 -876 4 1203 2103 117 9 58 chr1 81033501 81033845 -116161587 - ORR1A2 LTR MaLR 0 327 1 5 1203 968 251 47 40 chr1 81033845 81034005 -116161427 + Lx6 LINE L1 6366 6673 -787 4 1203 1236 89 0 0 chr1 81034005 81034355 -116161077 + (GA)n Simple_repeat Simple_repeat 1 350 0 5 1203 1559 240 12 35 chr1 81034355 81034540 -116160892 + Lx6 LINE L1 6959 7137 -323 4 1203 1327 99 16 11 chr1 81034540 81034724 -116160708 - B2_Mm2 SINE B2 -9 186 2 5 1203 1559 240 12 35 chr1 81034724 81034879 -116160553 + Lx6 LINE L1 7138 7291 -169 4 1203 2452 107 25 3 chr1 81034927 81035291 -116160141 + RLTR21 LTR ERVK 206 577 -995 5 1203 7054 134 21 6 chr1 81035294 81036461 -116158971 - Lx2 LINE L1 0 6997 5813 5 1203 4577 163 1 50 chr1 81036461 81036946 -116158486 + L1_Mm LINE L1 4957 5439 -444 5 1203 3105 70 0 0 chr1 81036946 81037344 -116158088 + L1_Mus2 LINE L1 6168 6565 -1 5 1203 4577 163 1 50 chr1 81037344 81037732 -116157700 + L1_Mm LINE L1 5440 5787 -96 5 1203 3253 218 110 19 chr1 81037734 81037804 -116157628 + RLTR21 LTR ERVK 564 633 -939 5 1203 1006 97 7 0 chr1 81037804 81037949 -116157483 + B1_Mus2 SINE Alu 2 147 0 5 1203 3253 218 110 19 chr1 81037949 81038460 -116156972 + RLTR21 LTR ERVK 634 1195 -377 5 1203 315 0 0 0 chr1 81038460 81038495 -116156937 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1203 3253 218 110 19 chr1 81038495 81038837 -116156595 + RLTR21 LTR ERVK 1196 1571 -1 5 1203 540 0 0 0 chr1 81040068 81040128 -116155304 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1203 387 0 0 0 chr1 81040128 81040170 -116155262 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1203 5748 25 0 0 chr1 81041621 81042290 -116153142 - L1Md_A LINE L1 0 6582 5914 6 1203 27 29 0 0 chr1 81042317 81042351 -116153081 + AT_rich Low_complexity Low_complexity 1 34 0 6 1203 186 297 114 26 chr1 81042479 81042593 -116152839 - MIRc SINE MIR -143 125 2 6 1203 1147 234 151 15 chr1 81043839 81044164 -116151268 + ORR1D2 LTR MaLR 1 369 -1 6 1203 23 0 0 0 chr1 81044764 81044787 -116150645 + AT_rich Low_complexity Low_complexity 1 23 0 6 1203 1599 42 0 0 chr1 81044972 81045333 -116150099 + (TTC)n Simple_repeat Simple_repeat 1 361 0 6 1203 527 195 0 8 chr1 81045337 81045466 -116149966 + CT-rich Low_complexity Low_complexity 2 129 0 6 1203 399 148 103 9 chr1 81045774 81045890 -116149542 - Lx9 LINE L1 -1 7643 7517 6 1203 274 319 56 42 chr1 81045894 81046038 -116149394 - MLT2B4 LTR ERVL -350 206 61 6 1203 1173 251 77 9 chr1 81047369 81047719 -116147713 + ORR1D1 LTR MaLR 1 374 0 7 1203 549 296 6 16 chr1 81048848 81049030 -116146402 + B3A SINE B2 3 182 -16 7 1203 219 219 21 10 chr1 81049031 81049128 -116146304 + (CA)n Simple_repeat Simple_repeat 2 99 0 7 1203 1192 54 0 0 chr1 81049708 81049856 -116145576 - B1_Mus1 SINE Alu 0 148 1 7 1203 6678 132 2 1 chr1 81049989 81051210 -116144222 - Lx LINE L1 -632 6022 4799 7 1203 3699 134 38 21 chr1 81051210 81051818 -116143614 + Lx LINE L1 6030 6647 -7 7 1203 993 163 0 0 chr1 81051922 81052100 -116143332 + GA-rich Low_complexity Low_complexity 2 179 0 7 1203 219 69 0 0 chr1 81052102 81052131 -116143301 + (CAAGA)n Simple_repeat Simple_repeat 3 31 0 7 1203 3583 19 0 0 chr1 81052583 81052996 -116142436 + L1Md_A LINE L1 6170 6582 0 7 1203 735 194 28 0 chr1 81053262 81053406 -116142026 + B1_Mur3 SINE Alu 1 148 -1 7 1203 280 324 9 0 chr1 81053535 81053640 -116141792 - Lx8 LINE L1 -636 6837 6732 7 1203 272 289 82 0 chr1 81053635 81053732 -116141700 + Lx8 LINE L1 6910 7014 -459 7 1203 263 176 15 0 chr1 81053751 81053819 -116141613 - MT2A LTR ERVL 0 533 465 8 1203 1882 283 15 0 chr1 81053833 81054314 -116141118 - MT2A LTR ERVL -45 488 1 8 1203 403 278 19 0 chr1 81055889 81055997 -116139435 + L1MA5 LINE L1 5825 5934 -366 8 1203 310 189 0 0 chr1 81056022 81056075 -116139357 + B3A SINE B2 2 54 -144 8 1203 432 0 0 0 chr1 81057348 81057396 -116138036 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1203 217 364 0 0 chr1 81058108 81058174 -116137258 - ID4_ SINE ID -15 68 3 8 1203 319 291 100 0 chr1 81058208 81058318 -116137114 - PB1 SINE Alu -2 125 5 8 1203 27 0 0 0 chr1 81059815 81059842 -116135590 + AT_rich Low_complexity Low_complexity 1 27 0 8 1203 234 158 105 0 chr1 81059911 81059968 -116135464 + MTD LTR MaLR 6 68 -353 8 1203 256 94 38 0 chr1 81059997 81060050 -116135382 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 8 1203 976 259 116 8 chr1 81060052 81060320 -116135112 + MTD LTR MaLR 123 419 0 8 1203 374 314 85 40 chr1 81060603 81060799 -116134633 - B3A SINE B2 -12 204 1 8 1203 270 239 101 11 chr1 81061687 81061776 -116133656 + RMER5 LTR ERV1 33 129 -405 9 1203 378 327 28 38 chr1 81061844 81062057 -116133375 + Lx8 LINE L1 7229 7439 -34 9 1203 508 273 84 0 chr1 81062063 81062217 -116133215 + RMER5 LTR ERV1 177 343 -191 9 1203 1285 123 136 5 chr1 81062225 81062446 -116132986 - Lx3B LINE L1 -3 6970 6721 9 1203 570 305 37 11 chr1 81062447 81062636 -116132796 + RMER5 LTR ERV1 330 523 -11 9 1203 23 33 0 0 chr1 81063004 81063034 -116132398 + AT_rich Low_complexity Low_complexity 1 30 0 9 1203 25 31 0 0 chr1 81063097 81063129 -116132303 + AT_rich Low_complexity Low_complexity 1 32 0 9 1203 482 333 107 18 chr1 81063141 81063309 -116132123 - B3A SINE B2 -15 183 1 9 1203 248 0 0 30 chr1 81063383 81063416 -116132016 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1203 261 333 19 29 chr1 81063841 81063946 -116131486 + RSINE1 SINE B4 57 160 -5 9 1203 22 35 0 0 chr1 81063991 81064020 -116131412 + AT_rich Low_complexity Low_complexity 1 29 0 9 1203 27 29 0 0 chr1 81064114 81064148 -116131284 + AT_rich Low_complexity Low_complexity 1 34 0 9 1203 279 289 26 0 chr1 81064549 81064625 -116130807 + GA-rich Low_complexity Low_complexity 2 79 0 1 1203 423 0 0 0 chr1 81064661 81064708 -116130724 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1203 1139 71 0 0 chr1 81064710 81064851 -116130581 - B1_Mm SINE Alu -6 141 1 1 1203 332 352 57 0 chr1 81066042 81066223 -116129209 + MIR SINE MIR 66 256 -6 1 1203 180 0 0 0 chr1 81066277 81066297 -116129135 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1 1203 28 0 0 0 chr1 81066325 81066353 -116129079 + AT_rich Low_complexity Low_complexity 1 28 0 1 1203 193 363 65 23 chr1 81066605 81066822 -116128610 - L2 LINE L2 -1126 2293 2068 1 1203 21 71 0 0 chr1 81067534 81067576 -116127856 + AT_rich Low_complexity Low_complexity 1 42 0 1 1203 764 108 0 8 chr1 81067718 81067840 -116127592 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 1 1203 274 268 55 0 chr1 81067851 81067978 -116127454 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 1 1203 320 325 6 96 chr1 81067992 81068159 -116127273 + MLT1B LTR MaLR 221 372 -2 1 1203 345 301 96 20 chr1 81068650 81068796 -116126636 + MLT1A LTR MaLR 32 188 -186 1 1203 204 286 20 30 chr1 81070836 81070904 -116124528 + GA-rich Low_complexity Low_complexity 1 68 0 1 1203 922 121 6 6 chr1 81070904 81071071 -116124361 + (GAA)n Simple_repeat Simple_repeat 1 167 0 1 1203 204 286 20 30 chr1 81071071 81071103 -116124329 + polypurine Low_complexity Low_complexity 69 99 0 1 1203 270 0 0 0 chr1 81071589 81071619 -116123813 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1203 421 234 35 12 chr1 81071956 81072129 -116123303 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 1 1203 252 267 26 13 chr1 81072461 81072537 -116122895 + CT-rich Low_complexity Low_complexity 3 79 0 1 1203 22 0 0 0 chr1 81072582 81072604 -116122828 + AT_rich Low_complexity Low_complexity 1 22 0 1 1203 264 30 0 0 chr1 81072644 81072677 -116122755 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1203 183 42 0 0 chr1 81072679 81072703 -116122729 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1203 617 142 9 0 chr1 81073691 81073804 -116121628 + GA-rich Low_complexity Low_complexity 1 114 0 1 1203 296 336 125 40 chr1 81079385 81079537 -116115895 + RSINE1 SINE B4 1 165 0 1 1203 201 178 0 0 chr1 81079546 81079591 -116115841 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1203 420 271 118 8 chr1 81079657 81079776 -116115656 + RSINE1 SINE B4 12 143 -22 1 1203 3063 75 0 0 chr1 81079885 81080285 -116115147 - L1_Mus1 LINE L1 -3 6564 6165 1 1203 183 42 0 0 chr1 81081087 81081111 -116114321 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1203 455 235 0 12 chr1 81082069 81082241 -116113191 + (TCCA)n Simple_repeat Simple_repeat 1 170 0 1 1203 423 256 0 0 chr1 81082292 81082468 -116112964 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 1 1203 21 0 0 0 chr1 81083369 81083390 -116112042 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 25 0 0 0 chr1 81083515 81083540 -116111892 + AT_rich Low_complexity Low_complexity 1 25 0 1 1203 531 306 14 7 chr1 81083565 81083703 -116111729 - RSINE1 SINE B4 -16 149 11 1 1203 213 39 0 0 chr1 81084747 81084773 -116110659 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1203 222 91 0 0 chr1 81091575 81091608 -116103824 + (GGGAGA)n Simple_repeat Simple_repeat 5 37 0 1 1203 195 42 0 0 chr1 81092394 81092418 -116103014 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1203 253 47 0 44 chr1 81095849 81095894 -116099538 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1203 25 31 0 0 chr1 81096998 81097030 -116098402 + AT_rich Low_complexity Low_complexity 1 32 0 1 1203 1884 251 31 54 chr1 81097771 81098313 -116097119 + Lx6 LINE L1 6563 7447 -13 1 1203 414 53 0 0 chr1 81098644 81098701 -116096731 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1203 245 245 14 14 chr1 81098724 81098865 -116096567 + (TATG)n Simple_repeat Simple_repeat 3 143 0 1 1203 371 293 0 8 chr1 81098879 81098996 -116096436 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1203 234 156 0 0 chr1 81099588 81099633 -116095799 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1203 216 0 0 0 chr1 81099633 81099657 -116095775 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1203 1312 119 39 34 chr1 81101289 81101523 -116093909 - L1_Mus3 LINE L1 -2 6636 6402 1 1203 234 365 17 9 chr1 81102145 81102261 -116093171 - Cheshire DNA MER1_type -2141 279 163 1 1203 2061 247 93 9 chr1 81102986 81103526 -116091906 - Lx6 LINE L1 -16 7444 6860 1 1203 214 273 0 0 chr1 81104158 81104213 -116091219 + T-rich Low_complexity Low_complexity 5 59 0 1 1203 5666 50 6 1 chr1 81104595 81105298 -116090134 + L1Md_F3 LINE L1 5879 6584 0 1 1203 224 331 93 50 chr1 81105337 81105477 -116089955 - MIRb SINE MIR -4 264 119 1 1203 560 14 14 0 chr1 81106081 81106150 -116089282 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1203 22 70 0 0 chr1 81107050 81107093 -116088339 + AT_rich Low_complexity Low_complexity 1 43 0 1 1203 267 194 0 0 chr1 81108756 81108818 -116086614 + A-rich Low_complexity Low_complexity 1 62 0 1 1203 21 57 0 0 chr1 81109173 81109208 -116086224 + AT_rich Low_complexity Low_complexity 1 35 0 1 1203 258 179 0 0 chr1 81109359 81109415 -116086017 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 1 1203 574 321 119 16 chr1 81109821 81110132 -116085300 - MLT1C LTR MaLR 0 467 125 1 1203 227 77 154 0 chr1 81110171 81110210 -116085222 - ORR1D2 LTR MaLR -1 369 325 1 1203 637 305 17 22 chr1 81110207 81110388 -116085044 - ORR1D2 LTR MaLR -190 180 1 1 1203 190 356 59 44 chr1 81111489 81111624 -116083808 - MIR SINE MIR -120 142 6 1 1203 205 309 0 0 chr1 81111715 81111783 -116083649 + CT-rich Low_complexity Low_complexity 2 69 0 1 1203 5363 113 27 2 chr1 81112323 81113112 -116082320 - Lx LINE L1 -21 6633 5826 1 1203 7097 97 29 4 chr1 81113129 81114163 -116081269 - Lx3_Mus LINE L1 -15 6994 5935 1 1203 1828 70 0 12 chr1 81114163 81114409 -116081023 + Lx3A LINE L1 5670 5912 -1069 1 1203 252 143 0 0 chr1 81114407 81114449 -116080983 - Lx5 LINE L1 -1209 5841 5800 1 1203 2306 100 12 0 chr1 81114492 81114813 -116080619 - ORR1A2 LTR MaLR 0 327 3 1 1203 3828 141 44 8 chr1 81114817 81115455 -116079977 - ORR1A2-int LTR MaLR -2 1961 1301 1 1203 428 327 45 45 chr1 81116728 81116941 -116078491 - B3A SINE B2 -2 214 2 1 1203 2824 75 39 5 chr1 81118530 81118917 -116076515 - MTB LTR MaLR 0 400 1 1 1203 4561 57 0 14 chr1 81119425 81120011 -116075421 + L1Md_F2 LINE L1 5994 6571 -11 1 1203 201 182 0 0 chr1 81120419 81120474 -116074958 + A-rich Low_complexity Low_complexity 1 55 0 1 1203 192 152 0 0 chr1 81120609 81120642 -116074790 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1203 23 0 0 0 chr1 81120730 81120753 -116074679 + AT_rich Low_complexity Low_complexity 1 23 0 1 1203 21 0 0 0 chr1 81120860 81120881 -116074551 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 593 143 36 0 chr1 81121058 81121198 -116074234 + (TCCA)n Simple_repeat Simple_repeat 4 148 0 1 1203 635 319 10 14 chr1 81121281 81121488 -116073944 + B3 SINE B2 3 208 -8 1 1203 369 0 0 0 chr1 81123339 81123380 -116072052 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1203 703 312 32 0 chr1 81123380 81123564 -116071868 - B3 SINE B2 -21 195 6 1 1203 794 331 118 3 chr1 81124242 81124557 -116070875 - Lx8 LINE L1 -199 7274 6924 1 1203 842 159 4 16 chr1 81125050 81125305 -116070127 + CT-rich Low_complexity Low_complexity 1 251 0 1 1203 201 268 14 0 chr1 81125331 81125402 -116070030 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 1 1203 6684 122 24 19 chr1 81125410 81126501 -116068931 - Lx3C LINE L1 -7 6969 5874 1 1203 250 343 76 0 chr1 81126553 81126658 -116068774 - PB1D7 SINE Alu -5 115 3 1 1203 23 33 0 0 chr1 81126843 81126873 -116068559 + AT_rich Low_complexity Low_complexity 1 30 0 1 1203 313 348 94 43 chr1 81127413 81127530 -116067902 + B4A SINE B4 1 123 -169 1 1203 506 16 0 16 chr1 81127668 81127732 -116067700 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1203 271 139 0 0 chr1 81127863 81127906 -116067526 + MIRc SINE MIR 118 160 -108 1 1203 315 0 0 0 chr1 81127973 81128008 -116067424 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1203 916 254 130 35 chr1 81128038 81128299 -116067133 - B4 SINE B4 -1 291 6 1 1203 207 0 0 0 chr1 81129487 81129510 -116065922 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1203 205 191 28 19 chr1 81129613 81129720 -116065712 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 1203 355 224 35 52 chr1 81129746 81129920 -116065512 + (CATATA)n Simple_repeat Simple_repeat 2 172 0 1 1203 243 125 0 0 chr1 81129996 81130036 -116065396 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1203 647 286 0 51 chr1 81130520 81130697 -116064735 + B3A SINE B2 1 168 -30 1 1203 22 35 0 0 chr1 81130697 81130726 -116064706 + AT_rich Low_complexity Low_complexity 1 29 0 1 1203 246 297 17 129 chr1 81131592 81131708 -116063724 - PB1D10 SINE Alu -5 112 10 1 1203 650 322 116 14 chr1 81131902 81132246 -116063186 + MLT1D LTR MaLR 120 498 -7 1 150 866 188 65 27 chr1 81133458 81133672 -116061760 + Lx9 LINE L1 7261 7511 -133 1 1204 273 57 0 0 chr1 81133672 81133707 -116061725 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1204 429 156 7 111 chr1 81133707 81133831 -116061601 + Lx9 LINE L1 7512 7621 -23 1 1204 399 119 0 0 chr1 81135454 81135521 -116059911 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1204 987 113 0 7 chr1 81135521 81135663 -116059769 - B1_Mus2 SINE Alu -6 141 1 1 1204 1891 25 0 44 chr1 81135816 81136065 -116059367 + L1Md_F2 LINE L1 6345 6582 0 1 1204 378 231 0 0 chr1 81136068 81136159 -116059273 + GA-rich Low_complexity Low_complexity 2 92 0 1 1204 1160 279 69 12 chr1 81136162 81136496 -116058936 + ORR1D2 LTR MaLR 18 370 0 1 1204 24 32 0 0 chr1 81137102 81137133 -116058299 + AT_rich Low_complexity Low_complexity 1 31 0 1 1204 389 189 11 0 chr1 81137595 81137685 -116057747 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1204 252 86 0 0 chr1 81138318 81138353 -116057079 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1204 552 321 7 0 chr1 81138418 81138555 -116056877 - B4A SINE B4 0 292 155 2 1204 474 269 48 55 chr1 81139214 81139379 -116056053 + ORR1D1 LTR MaLR 17 180 -198 2 1204 726 196 126 32 chr1 81139415 81139605 -116055827 + ORR1D1 LTR MaLR 167 374 0 2 1204 280 279 0 0 chr1 81139724 81139785 -116055647 + ORR1E LTR MaLR 3 63 -296 2 1204 2573 204 86 35 chr1 81140116 81140711 -116054721 - RMER20B LTR ERVK -2 625 1 2 1204 234 255 0 0 chr1 81141077 81141128 -116054304 + (CAT)n Simple_repeat Simple_repeat 2 52 0 2 1204 771 313 41 48 chr1 81141132 81141424 -116054008 - B4A SINE B4 -2 290 1 2 1204 290 229 74 99 chr1 81141427 81141548 -116053884 - B1F SINE Alu -5 144 27 2 1204 24 0 0 0 chr1 81142447 81142471 -116052961 + AT_rich Low_complexity Low_complexity 1 24 0 2 1204 252 0 0 0 chr1 81142834 81142862 -116052570 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1204 306 0 0 0 chr1 81142862 81142895 -116052537 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1204 187 152 21 21 chr1 81143399 81143446 -116051986 + GA-rich Low_complexity Low_complexity 2 48 0 2 1204 1150 90 0 17 chr1 81143446 81143626 -116051806 + (GGAGAA)n Simple_repeat Simple_repeat 1 177 0 2 1204 279 0 0 0 chr1 81144048 81144079 -116051353 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1204 440 48 16 0 chr1 81144079 81144141 -116051291 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1204 2632 42 6 3 chr1 81144398 81144728 -116050704 - L1Md_F2 LINE L1 -3 6579 6249 2 1204 1328 170 4 4 chr1 81145146 81145371 -116050061 - URR1B DNA MER1_type 0 225 1 2 1204 413 298 7 26 chr1 81145544 81145699 -116049733 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 2 1204 25 51 0 0 chr1 81146579 81146618 -116048814 + AT_rich Low_complexity Low_complexity 1 39 0 2 1204 26 0 0 0 chr1 81147184 81147210 -116048222 + AT_rich Low_complexity Low_complexity 1 26 0 2 1204 267 31 0 0 chr1 81147704 81147736 -116047696 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1204 630 296 105 27 chr1 81147769 81148141 -116047291 - MER63D DNA AcHobo -611 450 50 2 1204 418 293 103 0 chr1 81148302 81148418 -116047014 - MER5A1 DNA MER1_type 0 166 39 2 1204 447 333 6 54 chr1 81148564 81148732 -116046700 + RSINE1 SINE B4 3 162 -3 2 1204 296 250 12 23 chr1 81148759 81148845 -116046587 + (CATA)n Simple_repeat Simple_repeat 4 88 0 2 1204 290 326 11 81 chr1 81148895 81148994 -116046438 + B4 SINE B4 107 197 -95 2 1204 231 311 0 16 chr1 81149029 81149091 -116046341 + B3A SINE B2 134 194 -4 2 1204 415 257 94 9 chr1 81149404 81149510 -116045922 + B1F SINE Alu 32 146 -3 2 1204 228 167 27 14 chr1 81149573 81149646 -116045786 + GA-rich Low_complexity Low_complexity 1 74 0 2 1204 183 42 0 0 chr1 81149666 81149690 -116045742 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1204 774 124 0 0 chr1 81149787 81149908 -116045524 + (GGA)n Simple_repeat Simple_repeat 3 123 0 2 1204 198 0 0 0 chr1 81151128 81151150 -116044282 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1204 1027 268 28 2 chr1 81151230 81151523 -116043909 + Lx5 LINE L1 6095 6611 -849 2 1204 489 160 0 0 chr1 81151525 81151631 -116043801 + CT-rich Low_complexity Low_complexity 1 106 0 2 1204 277 309 22 7 chr1 81151790 81151927 -116043505 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 1204 25 31 0 0 chr1 81153641 81153673 -116041759 + AT_rich Low_complexity Low_complexity 1 32 0 2 1204 539 314 12 67 chr1 81154118 81154282 -116041150 - RSINE1 SINE B4 0 165 11 2 1204 198 0 0 0 chr1 81154346 81154368 -116041064 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1204 227 270 66 26 chr1 81154522 81154598 -116040834 + MER5A DNA MER1_type 86 164 -25 2 1204 234 303 59 20 chr1 81154968 81155069 -116040363 - MER20 DNA MER1_type -25 194 90 2 1204 258 319 0 65 chr1 81155244 81155321 -116040111 - MER20 DNA MER1_type -142 77 6 2 1204 2174 153 13 5 chr1 81156165 81156547 -116038885 - Lx2 LINE L1 0 6997 6613 2 1204 670 184 0 34 chr1 81156560 81156750 -116038682 - L1Md_F2 LINE L1 0 6582 6438 2 1204 249 83 0 0 chr1 81157526 81157562 -116037870 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2 1204 250 358 41 41 chr1 81158423 81158595 -116036837 + MER5B DNA MER1_type 7 178 0 2 1204 351 0 0 0 chr1 81158771 81158810 -116036622 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1204 330 169 0 0 chr1 81161530 81161619 -116033813 + T-rich Low_complexity Low_complexity 1 89 0 2 1204 288 125 49 111 chr1 81161641 81161722 -116033710 + Lx9 LINE L1 7568 7643 -1 2 1204 268 89 35 18 chr1 81163551 81163608 -116031824 + (TTTG)n Simple_repeat Simple_repeat 1 58 0 2 1204 259 283 0 0 chr1 81164308 81164368 -116031064 + PB1 SINE Alu 41 100 -27 2 1204 236 363 149 20 chr1 81165053 81165354 -116030078 - L2 LINE L2 -2232 1187 848 2 1204 213 321 35 12 chr1 81166478 81166563 -116028869 - MIRc SINE MIR -49 219 133 2 1204 276 77 0 0 chr1 81166677 81166716 -116028716 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1204 450 0 0 0 chr1 81166719 81166769 -116028663 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1204 957 327 10 99 chr1 81167548 81167944 -116027488 + MTEa LTR MaLR 3 365 -14 2 1204 4102 35 2 0 chr1 81167944 81168430 -116027002 + L1Md_T LINE L1 6096 6582 0 2 1204 957 327 10 99 chr1 81168430 81168447 -116026985 + MTEa LTR MaLR 366 379 0 2 1204 920 35 9 0 chr1 81168918 81169034 -116026398 + (TCTCC)n Simple_repeat Simple_repeat 5 121 0 2 1204 373 116 29 0 chr1 81169039 81169108 -116026324 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1204 1077 92 0 0 chr1 81169597 81169770 -116025662 + (TGG)n Simple_repeat Simple_repeat 1 173 0 2 1204 431 333 59 29 chr1 81170049 81170253 -116025179 - Tigger13a DNA MER2_type -561 210 1 2 1204 543 186 2 127 chr1 81172011 81172171 -116023261 + B1_Mur4 SINE Alu 9 150 0 2 1204 269 70 0 44 chr1 81172173 81172218 -116023214 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1204 1044 68 0 76 chr1 81172264 81172422 -116023010 - B1_Mus2 SINE Alu 0 147 2 2 1204 713 76 9 0 chr1 81172534 81172639 -116022793 + (GAAAA)n Simple_repeat Simple_repeat 5 110 0 2 1204 317 349 72 0 chr1 81173199 81173351 -116022081 - MLT1A0 LTR MaLR -25 340 178 2 1204 279 310 96 13 chr1 81173345 81173502 -116021930 - MLT1A0 LTR MaLR -130 235 66 2 1204 23 0 0 0 chr1 81174521 81174544 -116020888 + AT_rich Low_complexity Low_complexity 1 23 0 2 1204 610 316 129 26 chr1 81174885 81175226 -116020206 + MTE2a LTR MaLR 3 378 -1 2 1204 277 43 43 21 chr1 81176747 81176794 -116018638 + (TATG)n Simple_repeat Simple_repeat 2 49 0 2 1204 1194 270 87 22 chr1 81176844 81177200 -116018232 - MTE2b LTR MaLR 0 379 1 2 1204 22 70 0 0 chr1 81178101 81178144 -116017288 + AT_rich Low_complexity Low_complexity 1 43 0 2 1204 34711 41 7 1 chr1 81178269 81183483 -116011949 - L1Md_F3 LINE L1 -12 6572 1342 2 1204 189 303 36 100 chr1 81183659 81183769 -116011663 - L4 LINE RTE -1312 717 615 2 1204 661 222 0 16 chr1 81183839 81184022 -116011410 + CT-rich Low_complexity Low_complexity 1 180 0 2 1204 345 100 0 0 chr1 81184028 81184078 -116011354 + (T)n Simple_repeat Simple_repeat 1 50 0 2 1204 2159 109 19 0 chr1 81184541 81184854 -116010578 - ORR1A2 LTR MaLR -1 326 8 2 1204 210 174 0 0 chr1 81186591 81186637 -116008795 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1204 261 296 21 43 chr1 81187382 81187523 -116007909 + CT-rich Low_complexity Low_complexity 1 138 0 2 1204 255 150 0 0 chr1 81187528 81187588 -116007844 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1204 701 132 0 8 chr1 81187635 81187757 -116007675 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 2 1204 331 247 53 11 chr1 81189387 81189481 -116005951 - MLT1A0 LTR MaLR -11 354 257 2 1204 318 67 0 0 chr1 81190143 81190188 -116005244 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1204 306 0 0 0 chr1 81190188 81190221 -116005211 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1204 366 61 0 0 chr1 81190493 81190542 -116004890 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1204 1125 71 0 0 chr1 81190667 81190807 -116004625 + B1_Mm SINE Alu 2 141 -6 2 1204 291 85 0 0 chr1 81190808 81190855 -116004577 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 2 1204 289 345 53 0 chr1 81191115 81191228 -116004204 + B1F SINE Alu 5 123 -26 2 1204 760 144 17 11 chr1 81192348 81192523 -116002909 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1204 412 255 46 26 chr1 81193286 81193439 -116001993 + L1M2 LINE L1 5478 5633 -658 2 1204 440 96 41 0 chr1 81193447 81193520 -116001912 + (TTTTC)n Simple_repeat Simple_repeat 4 79 0 2 1204 815 216 47 38 chr1 81193530 81193742 -116001690 - B3 SINE B2 -1 215 2 2 1204 437 277 139 51 chr1 81194257 81194573 -116000859 + RLTR9A LTR ERVK 1 344 -24 2 1204 1409 254 119 58 chr1 81194581 81194964 -116000468 + RMER17B LTR ERVK 1 440 -518 2 1204 378 0 0 0 chr1 81194964 81195006 -116000426 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1204 1409 258 65 90 chr1 81195006 81195379 -116000053 + RMER17B LTR ERVK 371 721 -237 2 1204 235 91 55 0 chr1 81195845 81195900 -115999532 + (TTTTTG)n Simple_repeat Simple_repeat 4 61 0 2 1204 246 302 40 50 chr1 81196026 81196127 -115999305 + MLT1E1A LTR MaLR 576 675 -5 2 1204 247 32 0 0 chr1 81196415 81196446 -115998986 + RLTR10A LTR ERVK 380 410 -1 2 1204 471 35 0 0 chr1 81196446 81196503 -115998929 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1204 486 236 20 20 chr1 81196802 81196953 -115998479 + Lx7 LINE L1 6100 6250 -1446 2 1204 408 125 0 0 chr1 81197568 81197632 -115997800 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 2 1204 5938 249 42 70 chr1 81197634 81199621 -115995811 - Lx7 LINE L1 0 7696 5765 3 1204 469 247 226 17 chr1 81199662 81199839 -115995593 - B3 SINE B2 0 216 3 3 1204 7160 175 55 17 chr1 81199840 81201257 -115994175 - L1_Mur3 LINE L1 -1948 3932 2467 3 1204 315 0 0 0 chr1 81201257 81201292 -115994140 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1204 7160 175 55 17 chr1 81201292 81201557 -115993875 - L1_Mur3 LINE L1 -3414 2466 2188 3 1204 3568 213 55 42 chr1 81201548 81202841 -115992591 - L1_Mur3 LINE L1 -4254 1626 313 3 1204 1372 235 39 3 chr1 81202837 81203174 -115992258 - Lx7 LINE L1 -520 7176 6828 3 1204 903 148 17 6 chr1 81203213 81203390 -115992042 + CT-rich Low_complexity Low_complexity 2 180 0 3 1204 3398 33 2 0 chr1 81203391 81203786 -115991646 + MTA_Mm LTR MaLR 1 396 0 3 1204 603 0 0 0 chr1 81203786 81203853 -115991579 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 3 1204 586 54 0 0 chr1 81203858 81203932 -115991500 - B1_Mus2 SINE Alu -2 145 72 3 1204 254 312 0 0 chr1 81204441 81204505 -115990927 - L2b LINE L2 -10 3365 3302 3 1204 1603 151 98 63 chr1 81204628 81204946 -115990486 - ORR1A4 LTR MaLR 0 329 1 3 1204 333 0 0 0 chr1 81205381 81205418 -115990014 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1204 454 285 44 50 chr1 81205425 81205584 -115989848 - RMER13B LTR ERVK -9 899 742 3 1204 2591 236 82 49 chr1 81205602 81206414 -115989018 - RMER17B LTR ERVK -119 839 1 3 1204 662 359 68 18 chr1 81206454 81206732 -115988700 - B4A SINE B4 0 292 1 3 1204 24 0 0 0 chr1 81206732 81206756 -115988676 + AT_rich Low_complexity Low_complexity 1 24 0 3 1204 645 348 182 43 chr1 81207475 81208100 -115987332 - LTR41 LTR ERVL 0 768 57 3 1204 325 340 77 14 chr1 81209280 81209423 -115986009 - RSINE1 SINE B4 -13 152 1 3 1204 236 132 57 0 chr1 81209992 81210045 -115985387 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 3 1204 749 282 5 60 chr1 81210062 81210111 -115985321 - B3 SINE B2 -13 203 165 3 1204 359 108 31 0 chr1 81210111 81210176 -115985256 + (CATA)n Simple_repeat Simple_repeat 2 68 0 3 1204 749 282 5 60 chr1 81210176 81210341 -115985091 - B3 SINE B2 -52 164 1 3 1204 24 0 0 0 chr1 81210485 81210509 -115984923 + AT_rich Low_complexity Low_complexity 1 24 0 3 1204 394 224 40 0 chr1 81211016 81211092 -115984340 + B3A SINE B2 1 79 -119 3 1204 784 317 93 79 chr1 81211592 81212088 -115983344 - MLT1D LTR MaLR -2 503 1 3 1204 326 68 40 26 chr1 81212234 81212310 -115983122 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 3 1204 22 35 0 0 chr1 81213216 81213245 -115982187 + AT_rich Low_complexity Low_complexity 1 29 0 3 1204 486 33 0 0 chr1 81213356 81213416 -115982016 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1204 493 356 86 56 chr1 81214201 81214645 -115980787 - L2a LINE L2 -21 3405 2949 3 1204 182 354 70 8 chr1 81214712 81214840 -115980592 - L2b LINE L2 0 3375 3240 3 1204 276 30 0 0 chr1 81216790 81216823 -115978609 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1204 5129 191 28 39 chr1 81217435 81218536 -115976896 - Lx5 LINE L1 -91 6959 5871 3 1204 3088 288 60 34 chr1 81218545 81219754 -115975678 - Lx8 LINE L1 -5 7468 6228 3 1204 287 352 42 37 chr1 81220463 81220652 -115974780 - MIRb SINE MIR 0 268 79 3 1204 404 323 54 24 chr1 81220798 81220966 -115974466 - RMER15 LTR ERVL -97 478 306 3 1204 1401 96 0 0 chr1 81222748 81222945 -115972487 + L1_Mus2 LINE L1 6370 6566 0 3 1204 339 299 0 0 chr1 81223911 81223998 -115971434 + Tigger5 DNA MER2_type 1 87 -2319 3 1204 2114 112 9 58 chr1 81224004 81224347 -115971085 - ORR1A3 LTR MaLR 0 326 1 3 1204 1797 131 93 19 chr1 81224347 81224658 -115970774 - ORR1A3-int LTR MaLR 0 1963 1630 3 1204 3028 151 6 39 chr1 81224649 81225192 -115970240 - ORR1A3-int LTR MaLR -1438 525 1 3 1204 2117 111 3 97 chr1 81225192 81225246 -115970186 - ORR1A3 LTR MaLR 0 326 285 3 1204 216 0 0 0 chr1 81225246 81225270 -115970162 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1204 1029 96 0 0 chr1 81225270 81225405 -115970027 - B1_Mus2 SINE Alu -11 136 2 3 1204 2117 111 3 97 chr1 81225405 81225709 -115969723 - ORR1A3 LTR MaLR -42 284 2 3 1204 372 323 119 8 chr1 81225951 81226204 -115969228 - MamRep605 Unknown Unknown -571 305 25 3 1204 262 400 33 7 chr1 81226286 81226437 -115968995 - MLT1H2 LTR MaLR 0 489 335 3 1204 251 275 88 0 chr1 81226502 81226582 -115968850 - MLT1H2 LTR MaLR -375 174 88 3 1204 216 0 0 0 chr1 81226986 81227010 -115968422 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1204 407 328 122 39 chr1 81227511 81227822 -115967610 - MLT1H2-int LTR MaLR -1017 392 56 3 1204 354 284 130 43 chr1 81227904 81228088 -115967344 + RMER30 DNA MER1_type 2 201 -1 3 1204 2716 173 63 14 chr1 81228105 81228597 -115966835 + RMER20A LTR ERVK 1 516 0 3 1204 1127 45 13 25 chr1 81229027 81229185 -115966247 - L1Md_F3 LINE L1 -3 6581 6426 3 1204 7395 76 23 3 chr1 81229188 81230186 -115965246 - Lx3_Mus LINE L1 0 7009 5992 3 1204 481 278 0 14 chr1 81230519 81230665 -115964767 - Lx6 LINE L1 -26 7434 7291 3 1204 393 22 0 0 chr1 81230670 81230716 -115964716 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 3 1204 232 286 86 0 chr1 81231522 81231627 -115963805 + Lx8 LINE L1 7146 7259 -214 3 1204 243 227 0 0 chr1 81231826 81231892 -115963540 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1204 180 184 0 0 chr1 81232412 81232461 -115962971 + CT-rich Low_complexity Low_complexity 1 49 0 3 1204 294 125 0 0 chr1 81232461 81232509 -115962923 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1204 31 58 0 0 chr1 81232573 81232625 -115962807 + AT_rich Low_complexity Low_complexity 1 52 0 3 1204 434 298 124 76 chr1 81233522 81233680 -115961752 - MLT1A LTR MaLR 0 374 218 3 1204 5722 55 0 0 chr1 81233680 81234383 -115961049 + L1Md_T LINE L1 5880 6582 0 3 1204 434 298 124 76 chr1 81234383 81234554 -115960878 - MLT1A LTR MaLR -157 217 29 3 1204 486 0 0 0 chr1 81235343 81235397 -115960035 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1204 1549 162 29 43 chr1 81235924 81236266 -115959166 - Lx3C LINE L1 0 6997 6645 3 1204 242 158 0 0 chr1 81239158 81239196 -115956236 + B3A SINE B2 1 38 -160 3 1204 1229 79 0 0 chr1 81239514 81239678 -115955754 + L1_Mus1 LINE L1 6404 6567 0 3 1204 1494 70 53 0 chr1 81239692 81239919 -115955513 + BGLII LTR ERVK 127 365 -56 3 1204 300 45 0 0 chr1 81241638 81241682 -115953750 - L1Md_F2 LINE L1 -25 6557 6514 3 1204 206 83 56 0 chr1 81241688 81241724 -115953708 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1204 216 97 0 0 chr1 81241742 81241773 -115953659 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1204 1027 264 74 22 chr1 81241773 81242044 -115953388 + ORR1E LTR MaLR 18 302 -57 3 1204 23 54 0 0 chr1 81242075 81242112 -115953320 + AT_rich Low_complexity Low_complexity 1 37 0 3 1204 583 269 90 35 chr1 81242132 81242400 -115953032 - MTD LTR MaLR -14 405 95 3 1204 733 192 209 0 chr1 81242400 81242577 -115952855 + B3 SINE B2 2 215 -1 3 1204 389 299 178 65 chr1 81242577 81242601 -115952831 - MTD LTR MaLR -313 94 69 3 1204 464 347 84 20 chr1 81242778 81243028 -115952404 + B4A SINE B4 4 269 -23 3 1204 360 0 0 0 chr1 81243039 81243079 -115952353 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1204 2427 169 36 5 chr1 81244008 81244449 -115950983 - RLTR28B LTR ERVL 0 481 27 3 1204 276 77 0 0 chr1 81245268 81245307 -115950125 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1204 297 0 0 0 chr1 81245661 81245694 -115949738 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1204 25 51 0 0 chr1 81246247 81246286 -115949146 + AT_rich Low_complexity Low_complexity 1 39 0 3 1204 3554 154 65 23 chr1 81246730 81247394 -115948038 - RLTR17 LTR ERVK 0 692 1 3 1204 216 174 0 42 chr1 81247428 81247476 -115947956 + A-rich Low_complexity Low_complexity 5 50 0 3 1204 994 284 105 3 chr1 81247706 81247992 -115947440 + MTD LTR MaLR 66 380 -39 3 1204 423 0 0 0 chr1 81249079 81249126 -115946306 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1204 224 30 0 29 chr1 81249230 81249264 -115946168 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1204 473 176 51 29 chr1 81249304 81249479 -115945953 + RMER17C LTR ERVK 97 275 -135 3 1204 1164 63 0 0 chr1 81249599 81249742 -115945690 + B1_Mus2 SINE Alu 1 143 -4 3 1204 207 284 27 13 chr1 81250074 81250149 -115945283 + GA-rich Low_complexity Low_complexity 2 77 0 3 1204 280 210 12 12 chr1 81250151 81250233 -115945199 + G-rich Low_complexity Low_complexity 2 83 0 3 1204 21 0 0 0 chr1 81250659 81250680 -115944752 + AT_rich Low_complexity Low_complexity 1 21 0 3 1204 205 333 22 0 chr1 81250941 81251031 -115944401 + CT-rich Low_complexity Low_complexity 5 96 0 3 1204 258 276 34 17 chr1 81251652 81251770 -115943662 - L1MB4 LINE L1 -5 6175 6056 3 1204 315 179 0 0 chr1 81251778 81251845 -115943587 + (CTG)n Simple_repeat Simple_repeat 2 68 0 3 1204 649 301 133 13 chr1 81251946 81252481 -115942951 - L1MB4 LINE L1 -237 5943 5345 3 1204 243 0 0 0 chr1 81252569 81252596 -115942836 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1204 712 328 56 30 chr1 81252618 81252885 -115942547 - B4A SINE B4 -18 274 1 3 1204 343 327 95 38 chr1 81252891 81253101 -115942331 - L1M2 LINE L1 -885 5258 5037 3 1204 297 259 22 11 chr1 81253634 81253724 -115941708 + Lx7 LINE L1 7019 7109 -587 3 1204 258 229 0 0 chr1 81253824 81253894 -115941538 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1204 1376 188 23 26 chr1 81254046 81254396 -115941036 + Lx9 LINE L1 7294 7642 -2 3 1204 263 307 67 38 chr1 81255677 81255782 -115939650 - MER5B DNA MER1_type 0 178 71 3 1204 259 404 6 32 chr1 81255895 81256051 -115939381 - MIRm SINE MIR -115 161 10 3 1204 369 0 0 0 chr1 81256424 81256465 -115938967 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1204 930 111 0 0 chr1 81257278 81257422 -115938010 - L1_Mur1 LINE L1 -5891 1091 948 3 1204 3943 71 10 8 chr1 81257422 81257996 -115937436 - L1Md_F2 LINE L1 0 6582 6049 3 1204 551 294 56 9 chr1 81260636 81260849 -115934583 + ID_B1 SINE B4 2 224 0 3 1204 336 102 0 0 chr1 81261656 81261705 -115933727 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 3 1204 232 271 14 28 chr1 81261774 81261846 -115933586 + MLT1A1 LTR MaLR 298 368 -40 3 1204 208 226 37 19 chr1 81262716 81262770 -115932662 + GA-rich Low_complexity Low_complexity 2 56 0 4 1204 300 140 35 0 chr1 81263216 81263273 -115932159 - MER89 LTR ERV1 0 559 501 4 1204 566 266 224 12 chr1 81263364 81263619 -115931813 + MER57C2 LTR ERV1 63 371 -63 4 1204 22 56 0 0 chr1 81263743 81263779 -115931653 + AT_rich Low_complexity Low_complexity 1 36 0 4 1205 791 226 163 103 chr1 81266893 81267232 -115928200 + MTE2a LTR MaLR 3 385 -15 4 1205 1346 294 135 11 chr1 81267600 81268044 -115927388 - MLT2B1 LTR ERVL -13 507 9 4 1205 965 60 8 0 chr1 81268909 81269042 -115926390 - L1_Mus2 LINE L1 0 6566 6433 4 1205 1190 268 82 12 chr1 81269957 81270297 -115925135 - MTE2a LTR MaLR -15 364 1 4 1205 594 0 0 0 chr1 81271021 81271087 -115924345 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 1205 191 296 167 14 chr1 81271641 81271713 -115923719 + MIR3 SINE MIR 2 84 -124 4 1205 462 208 0 0 chr1 81272328 81272487 -115922945 + CT-rich Low_complexity Low_complexity 2 160 0 4 1205 507 17 0 0 chr1 81272491 81272551 -115922881 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1205 182 229 0 0 chr1 81272565 81272600 -115922832 - L2 LINE L2 -1079 2340 2306 4 1205 234 331 185 31 chr1 81272965 81273224 -115922208 - Charlie8 DNA MER1_type -1990 438 140 4 1205 2446 46 3 0 chr1 81273448 81273750 -115921682 + L1Md_T LINE L1 6279 6581 -1 4 1205 1106 171 47 0 chr1 81273827 81274038 -115921394 + URR1B DNA MER1_type 5 225 0 4 1205 375 41 0 0 chr1 81275873 81275922 -115919510 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1205 341 351 130 0 chr1 81276063 81276194 -115919238 + RSINE1 SINE B4 3 150 -15 4 1205 342 0 0 0 chr1 81276211 81276249 -115919183 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1205 330 45 0 0 chr1 81276249 81276292 -115919140 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1205 300 27 0 0 chr1 81276458 81276495 -115918937 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1205 296 289 77 26 chr1 81276847 81276964 -115918468 + MLT1H LTR MaLR 24 146 -403 4 1205 596 154 37 7 chr1 81276983 81277291 -115918141 + (CA)n Simple_repeat Simple_repeat 1 317 0 4 1205 354 45 0 0 chr1 81277426 81277470 -115917962 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1205 215 317 24 24 chr1 81278836 81279001 -115916431 + (TATATG)n Simple_repeat Simple_repeat 1 165 0 4 1205 696 269 68 50 chr1 81279226 81279563 -115915869 - RLTR15 LTR ERVK -16 343 1 4 1205 304 295 165 50 chr1 81279637 81279819 -115915613 - RMER15 LTR ERVL -36 539 337 4 1205 2516 40 0 0 chr1 81280016 81280318 -115915114 + L1Md_T LINE L1 6281 6582 0 4 1205 293 308 80 37 chr1 81280469 81280631 -115914801 + LTR78 LTR ERV1 706 874 -430 4 1205 279 0 0 0 chr1 81280856 81280887 -115914545 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1205 585 266 68 34 chr1 81280908 81281056 -115914376 - B3A SINE B2 -42 156 4 4 1205 1777 203 67 64 chr1 81281193 81281531 -115913901 + MTD LTR MaLR 1 357 -62 4 1205 1357 87 14 14 chr1 81281531 81281741 -115913691 + L1_Mus3 LINE L1 6426 6635 -3 4 1205 1777 203 69 60 chr1 81281741 81281814 -115913618 + MTD LTR MaLR 306 406 -13 4 1205 24 53 0 0 chr1 81281834 81281872 -115913560 + AT_rich Low_complexity Low_complexity 1 38 0 4 1205 180 164 48 16 chr1 81283248 81283310 -115912122 + CT-rich Low_complexity Low_complexity 2 65 0 4 1205 204 40 0 0 chr1 81283436 81283461 -115911971 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1205 180 97 0 0 chr1 81283536 81283567 -115911865 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1205 192 125 0 0 chr1 81283990 81284022 -115911410 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 4 1205 300 77 0 0 chr1 81284207 81284246 -115911186 - tRNA-Tyr-TAT tRNA tRNA -37 39 1 4 1205 957 88 162 6 chr1 81284250 81284410 -115911022 + B2_Mm2 SINE B2 3 187 -8 4 1205 1156 311 60 33 chr1 81284473 81285024 -115910408 - Charlie1a DNA MER1_type -365 1090 525 4 1205 7017 112 0 6 chr1 81285121 81286270 -115909162 + Lx2 LINE L1 5504 6645 -352 4 1205 1048 164 18 9 chr1 81286268 81286468 -115908964 + Lx2 LINE L1 6775 6976 -21 4 1205 1071 43 72 0 chr1 81286468 81286606 -115908826 + B1_Mus1 SINE Alu 1 148 0 4 1205 1048 164 18 9 chr1 81286606 81286626 -115908806 + Lx2 LINE L1 6977 6996 -1 4 1205 781 82 0 0 chr1 81286705 81286815 -115908617 + L1_Mus1 LINE L1 6456 6565 -2 4 1205 701 102 9 0 chr1 81286815 81286923 -115908509 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 4 1205 25 65 0 0 chr1 81288650 81288696 -115906736 + AT_rich Low_complexity Low_complexity 1 46 0 4 1205 243 0 0 0 chr1 81289322 81289349 -115906083 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 4 1205 884 143 32 27 chr1 81289417 81289604 -115905828 + B2_Mm2 SINE B2 1 188 -7 4 1205 203 277 101 54 chr1 81291798 81291947 -115903485 - L2 LINE L2 -780 2639 2484 4 1205 953 284 49 15 chr1 81292378 81292643 -115902789 + MTE2b LTR MaLR 1 274 -105 4 1205 525 80 0 0 chr1 81293467 81293542 -115901890 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1205 354 309 32 8 chr1 81293625 81293749 -115901683 + GA-rich Low_complexity Low_complexity 2 128 0 4 1205 3025 62 27 2 chr1 81293822 81294224 -115901208 + L1_Mus3 LINE L1 6220 6631 -7 4 1205 232 188 64 50 chr1 81297706 81297846 -115897586 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 4 1205 242 133 66 13 chr1 81297708 81297784 -115897648 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1205 204 125 0 0 chr1 81298834 81298866 -115896566 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1205 990 187 113 5 chr1 81298972 81299176 -115896256 - URR1A DNA MER1_type 0 226 1 4 1205 1142 268 88 0 chr1 81299925 81300265 -115895167 - ORR1D2 LTR MaLR 0 370 1 4 1205 417 248 147 7 chr1 81300623 81300773 -115894659 - RMER20B LTR ERVK -223 404 234 4 1205 589 248 25 8 chr1 81301000 81301122 -115894310 - RMER20B LTR ERVK -502 125 2 4 1205 216 354 0 40 chr1 81301179 81301250 -115894182 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 4 1205 495 87 0 0 chr1 81301250 81301319 -115894113 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1205 216 354 0 40 chr1 81301319 81301397 -115894035 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 4 1205 804 88 0 0 chr1 81302929 81303043 -115892389 + (TCTCCC)n Simple_repeat Simple_repeat 1 114 0 4 1205 462 18 0 0 chr1 81303047 81303102 -115892330 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1205 396 0 0 0 chr1 81303447 81303491 -115891941 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 4 1205 1170 71 0 0 chr1 81303659 81303829 -115891603 + (GA)n Simple_repeat Simple_repeat 1 170 0 4 1205 291 69 16 49 chr1 81303874 81303935 -115891497 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 1205 537 16 0 0 chr1 81305671 81305733 -115889699 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1205 396 103 0 0 chr1 81305784 81305842 -115889590 + (TATG)n Simple_repeat Simple_repeat 2 59 0 4 1205 311 306 180 31 chr1 81305843 81305971 -115889461 - B3 SINE B2 -50 166 20 4 1205 483 18 0 0 chr1 81306049 81306105 -115889327 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 4 1205 1129 177 76 5 chr1 81306579 81306789 -115888643 + URR1B DNA MER1_type 1 225 0 4 1205 534 103 0 0 chr1 81306954 81307032 -115888400 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1205 591 15 0 0 chr1 81307045 81307113 -115888319 + (CCA)n Simple_repeat Simple_repeat 1 68 0 4 1205 291 263 69 29 chr1 81307816 81307918 -115887514 + RMER12 LTR ERVK 745 850 -472 4 1205 261 0 0 0 chr1 81307937 81307966 -115887466 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1205 459 188 288 22 chr1 81308010 81308194 -115887238 - RLTR42 LTR ERVK -6 233 1 4 1205 6398 169 71 14 chr1 81308194 81309583 -115885849 - RLTR42-int LTR ERVK 0 5522 4055 4 1205 1275 146 11 18 chr1 81309581 81309853 -115885579 - RLTR42-int LTR ERVK -3189 2333 2064 4 1205 1311 74 0 0 chr1 81309868 81310044 -115885388 + (TCTCC)n Simple_repeat Simple_repeat 3 178 0 4 1205 1123 69 0 65 chr1 81310064 81310219 -115885213 - B1_Mus1 SINE Alu -2 146 2 4 1205 852 173 5 42 chr1 81310221 81310438 -115884994 - RLTR42-int LTR ERVK -3444 2078 1870 4 1205 3493 202 40 34 chr1 81310639 81310997 -115884435 - RLTR42-int LTR ERVK -3653 1869 1503 4 1205 188 35 35 0 chr1 81310997 81311026 -115884406 + (CAA)n Simple_repeat Simple_repeat 2 31 0 4 1205 3493 202 40 34 chr1 81311026 81311488 -115883944 - RLTR42-int LTR ERVK -4020 1502 1044 4 1205 475 163 83 42 chr1 81311489 81311585 -115883847 - RLTR42 LTR ERVK -136 103 4 4 1205 231 348 39 96 chr1 81311585 81311763 -115883669 + B4 SINE B4 5 172 -120 4 1205 367 292 11 0 chr1 81311787 81311876 -115883556 - 5S rRNA rRNA -31 90 1 4 1205 275 229 16 0 chr1 81311973 81312034 -115883398 + (CATA)n Simple_repeat Simple_repeat 4 65 0 4 1205 564 298 22 17 chr1 81312072 81312253 -115883179 + B3A SINE B2 1 182 -16 4 1205 219 265 73 0 chr1 81315425 81315493 -115879939 + MIR SINE MIR 78 150 -112 4 1205 193 151 38 0 chr1 81316042 81316095 -115879337 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 4 1205 401 282 20 109 chr1 81316129 81316276 -115879156 - B4 SINE B4 -151 141 8 4 1205 1086 212 10 10 chr1 81316360 81316565 -115878867 + B3 SINE B2 1 205 -11 4 1205 1410 62 0 0 chr1 81317419 81317646 -115877786 + (TG)n Simple_repeat Simple_repeat 1 227 0 4 1205 360 0 0 0 chr1 81318205 81318245 -115877187 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1205 21 36 0 0 chr1 81318819 81318847 -115876585 + AT_rich Low_complexity Low_complexity 1 28 0 4 1205 446 366 80 25 chr1 81319438 81319713 -115875719 - B4A SINE B4 0 292 3 4 1205 396 0 0 0 chr1 81319936 81319980 -115875452 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1205 838 240 51 0 chr1 81322745 81322941 -115872491 - B3 SINE B2 -6 210 5 4 1205 283 264 73 0 chr1 81323138 81323248 -115872184 - L1MA6 LINE L1 -201 6099 5982 4 1205 489 34 0 0 chr1 81323483 81323542 -115871890 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 4 1205 180 0 0 0 chr1 81323587 81323607 -115871825 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1205 25 31 0 0 chr1 81324735 81324767 -115870665 + AT_rich Low_complexity Low_complexity 1 32 0 4 1205 193 356 65 42 chr1 81325391 81325558 -115869874 - L2b LINE L2 0 3387 3226 4 1205 739 259 33 76 chr1 81326208 81326509 -115868923 - Lx6 LINE L1 -28 7432 7145 4 1205 277 350 34 0 chr1 81326595 81326712 -115868720 + B1F2 SINE Alu 24 144 -5 5 1205 1805 10 0 0 chr1 81326798 81327005 -115868427 + L1Md_T LINE L1 6374 6580 -2 5 1205 282 56 0 0 chr1 81327010 81327046 -115868386 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1205 880 254 19 0 chr1 81327261 81327466 -115867966 - B3 SINE B2 -7 209 1 5 1205 22 0 0 0 chr1 81327535 81327557 -115867875 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 22 0 0 0 chr1 81329039 81329061 -115866371 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 205 250 31 0 chr1 81329343 81329407 -115866025 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1205 26 0 0 0 chr1 81329468 81329494 -115865938 + AT_rich Low_complexity Low_complexity 1 26 0 5 1205 323 284 100 52 chr1 81329671 81329942 -115865490 - L1MC3 LINE L1 -163 7622 7339 5 1205 188 78 37 56 chr1 81330188 81330242 -115865190 + T-rich Low_complexity Low_complexity 3 55 0 5 1205 613 165 294 31 chr1 81330564 81330727 -115864705 + B3 SINE B2 2 207 -9 5 1205 326 143 16 0 chr1 81330842 81330905 -115864527 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1205 249 180 0 0 chr1 81332029 81332079 -115863353 + T-rich Low_complexity Low_complexity 1 50 0 5 1205 324 0 0 0 chr1 81332484 81332520 -115862912 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1205 741 62 18 9 chr1 81332542 81332655 -115862777 + (GA)n Simple_repeat Simple_repeat 1 114 0 5 1205 22 35 0 0 chr1 81334506 81334535 -115860897 + AT_rich Low_complexity Low_complexity 1 29 0 5 1205 22 56 0 0 chr1 81334903 81334939 -115860493 + AT_rich Low_complexity Low_complexity 1 36 0 5 1205 344 22 22 0 chr1 81334989 81335034 -115860398 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1205 245 182 109 0 chr1 81339018 81339073 -115856359 - B3 SINE B2 -6 210 150 5 1205 1456 234 42 33 chr1 81339642 81339973 -115855459 - MTD LTR MaLR -2 417 84 5 1205 248 313 48 0 chr1 81340020 81340103 -115855329 - MTD LTR MaLR -329 92 6 5 1205 258 81 0 0 chr1 81340120 81340157 -115855275 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1205 2337 218 244 79 chr1 81340169 81340784 -115854648 - MTD-int LTR MaLR -46 1212 381 5 1205 1135 96 17 0 chr1 81340784 81340962 -115854470 - L1_Mus3 LINE L1 -6 6632 6452 5 1205 2337 218 244 79 chr1 81340962 81341313 -115854119 - MTD-int LTR MaLR -878 380 67 5 1205 2814 111 75 21 chr1 81341313 81341783 -115853649 - Lx3C LINE L1 -2 6974 6480 5 1205 2337 218 244 79 chr1 81341783 81341855 -115853577 - MTD-int LTR MaLR -1192 66 1 5 1205 1298 247 97 31 chr1 81341855 81342247 -115853185 - MTD LTR MaLR 0 419 2 5 1205 532 363 99 23 chr1 81342267 81342780 -115852652 + Lx8 LINE L1 6892 7443 -30 5 1205 250 291 100 60 chr1 81342910 81343060 -115852372 - MER5A1 DNA MER1_type -6 160 5 5 1205 903 68 0 0 chr1 81345023 81345155 -115850277 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 1205 254 349 11 34 chr1 81345191 81345210 -115850222 - ID_B1 SINE B4 -56 168 82 5 1205 298 357 0 0 chr1 81345210 81345280 -115850152 - B1F SINE Alu -79 70 1 5 1205 1042 42 7 14 chr1 81345399 81345545 -115849887 - L1Md_F2 LINE L1 0 6582 6438 5 1205 844 264 9 23 chr1 81346242 81346459 -115848973 + B3 SINE B2 2 215 -1 5 1205 248 191 32 0 chr1 81346741 81346804 -115848628 + CT-rich Low_complexity Low_complexity 1 65 0 5 1205 242 278 0 0 chr1 81346816 81346870 -115848562 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1205 256 312 118 53 chr1 81346886 81347038 -115848394 + Arthur1B DNA Tip100 182 343 -882 5 1205 290 311 88 92 chr1 81347168 81347441 -115847991 - MLT-int LTR MaLR -210 1525 1254 5 1205 1597 35 0 0 chr1 81347505 81347702 -115847730 - L1Md_A LINE L1 0 6582 6386 5 1205 340 24 0 0 chr1 81347702 81347743 -115847689 + L1Md_T LINE L1 5985 6025 -557 5 1205 21 0 0 0 chr1 81347745 81347766 -115847666 + AT_rich Low_complexity Low_complexity 1 21 0 5 1205 304 279 154 13 chr1 81347790 81347939 -115847493 - L1MCa LINE L1 -4863 1645 1476 5 1205 1313 177 12 0 chr1 81347972 81348221 -115847211 + Lx2 LINE L1 6745 6996 -1 5 1205 606 68 0 0 chr1 81348359 81348447 -115846985 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 5 1205 325 58 19 19 chr1 81348631 81348684 -115846748 + (TTA)n Simple_repeat Simple_repeat 1 53 0 5 1205 549 44 0 0 chr1 81349249 81349317 -115846115 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 5 1205 235 229 0 14 chr1 81350213 81350284 -115845148 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 5 1205 542 292 6 77 chr1 81350284 81350440 -115844992 + ID_B1 SINE B4 78 222 -2 5 1205 783 305 5 15 chr1 81350442 81350642 -115844790 + B3 SINE B2 9 206 -10 5 1205 842 355 67 20 chr1 81352705 81353156 -115842276 + MER97c DNA MER1_type? 12 483 -607 5 1205 309 26 0 0 chr1 81354040 81354078 -115841354 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1205 772 215 106 15 chr1 81354444 81354608 -115840824 + B3 SINE B2 1 183 -33 5 1205 540 0 0 0 chr1 81354608 81354668 -115840764 + (CAAAA)n Simple_repeat Simple_repeat 5 64 0 5 1205 772 215 106 15 chr1 81354668 81354701 -115840731 + B3 SINE B2 184 215 -1 5 1205 22 0 0 0 chr1 81354795 81354817 -115840615 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 1772 179 315 11 chr1 81355478 81355929 -115839503 + Lx2B LINE L1 6413 7000 0 5 1205 270 73 0 0 chr1 81355929 81355970 -115839462 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 5 1205 375 306 65 0 chr1 81356643 81356767 -115838665 + MLT2B4 LTR ERVL 378 509 -47 5 1205 555 219 15 14 chr1 81356779 81356911 -115838521 + MTE2a LTR MaLR 1 160 -259 5 1205 522 197 0 22 chr1 81357105 81357240 -115838192 + Lx9 LINE L1 7509 7640 -4 5 1205 261 0 0 0 chr1 81357623 81357652 -115837780 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1205 3095 36 57 0 chr1 81357933 81358322 -115837110 + IAPLTR2a LTR ERVK 1 411 0 5 1205 26 0 0 0 chr1 81358704 81358730 -115836702 + AT_rich Low_complexity Low_complexity 1 26 0 5 1205 879 83 0 0 chr1 81359480 81359601 -115835831 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 5 1205 714 44 0 0 chr1 81359601 81359691 -115835741 + (TC)n Simple_repeat Simple_repeat 2 91 0 5 1205 1112 83 0 0 chr1 81359692 81359836 -115835596 - B1_Mus1 SINE Alu 0 148 5 5 1205 473 127 38 38 chr1 81360066 81360172 -115835260 - Lx2B LINE L1 -2 6998 6893 5 1205 1191 305 91 42 chr1 81360297 81360779 -115834653 - MTE-int LTR MaLR -1072 508 3 5 1205 776 292 55 73 chr1 81360994 81361039 -115834393 - MT2A LTR ERVL -2 599 560 5 1205 458 33 0 16 chr1 81361039 81361100 -115834332 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1205 846 255 108 30 chr1 81361100 81361411 -115834021 - MT2A LTR ERVL -42 559 88 5 1205 325 231 0 15 chr1 81361411 81361477 -115833955 - MT2A LTR ERVL -411 122 58 5 1205 801 89 136 8 chr1 81362405 81362530 -115832902 - B1_Mus1 SINE Alu -7 141 1 5 1205 1010 235 162 17 chr1 81362536 81362895 -115832537 - Lx9 LINE L1 0 7644 7234 5 1205 267 157 0 0 chr1 81363161 81363212 -115832220 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1205 808 114 7 7 chr1 81364499 81364640 -115830792 + (TA)n Simple_repeat Simple_repeat 1 141 0 5 1205 440 304 91 30 chr1 81364694 81364891 -115830541 + MER20 DNA MER1_type 4 212 -7 5 1205 1444 83 0 5 chr1 81365368 81365561 -115829871 - B2_Mm2 SINE B2 -2 193 2 5 1205 687 69 0 0 chr1 81366217 81366319 -115829113 + (GA)n Simple_repeat Simple_repeat 2 103 0 5 1205 325 269 0 13 chr1 81367581 81367660 -115827772 + RMER15 LTR ERVL 407 484 -91 5 1205 486 0 0 0 chr1 81369113 81369167 -115826265 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1205 1662 125 0 0 chr1 81371019 81371275 -115824157 + Lx3_Mus LINE L1 6754 7009 0 5 1205 1410 206 57 0 chr1 81371481 81371777 -115823655 - ORR1C2 LTR MaLR 0 384 72 5 1205 1308 87 0 0 chr1 81372067 81372297 -115823135 + (TTG)n Simple_repeat Simple_repeat 1 230 0 5 1205 1172 48 7 0 chr1 81372773 81372919 -115822513 - B1_Mm SINE Alu 0 147 1 5 1205 453 122 0 0 chr1 81373321 81373395 -115822037 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1205 22 35 0 0 chr1 81373682 81373711 -115821721 + AT_rich Low_complexity Low_complexity 1 29 0 5 1205 702 275 37 107 chr1 81373748 81374102 -115821330 + MLT1B LTR MaLR 59 387 -3 5 1205 240 226 0 0 chr1 81374747 81374800 -115820632 + A-rich Low_complexity Low_complexity 1 53 0 5 1205 779 279 60 13 chr1 81374804 81375036 -115820396 + Lx8 LINE L1 6195 6437 -1036 5 1205 8816 63 8 0 chr1 81375040 81376206 -115819226 - L1_Mm LINE L1 -1144 4739 3565 5 1205 366 108 40 0 chr1 81376627 81376701 -115818731 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1205 243 0 0 0 chr1 81377375 81377402 -115818030 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1205 279 0 0 0 chr1 81377468 81377499 -115817933 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 5 1205 1934 241 87 52 chr1 81377501 81377658 -115817774 - Lx2B LINE L1 -4 6972 6769 5 1205 405 0 0 0 chr1 81377658 81377703 -115817729 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1205 2002 215 17 7 chr1 81377703 81378140 -115817292 - Lx2B LINE L1 -208 6768 6353 5 1205 4853 71 6 6 chr1 81378181 81378833 -115816599 - L1Md_F2 LINE L1 0 6582 5931 5 1205 2542 48 0 0 chr1 81378833 81379142 -115816290 + L1Md_F2 LINE L1 5630 5938 -644 5 1205 2360 209 52 24 chr1 81379137 81379710 -115815722 - Lx2B LINE L1 -632 6368 5780 5 1205 816 297 42 19 chr1 81379710 81379971 -115815461 - MTD LTR MaLR -152 267 1 5 1205 6220 185 28 62 chr1 81380122 81381289 -115814143 + Lx5 LINE L1 5555 6706 -344 5 1205 353 67 0 0 chr1 81381289 81381334 -115814098 - MTB LTR MaLR -10 390 346 5 1205 6220 185 28 62 chr1 81381334 81381629 -115813803 + Lx5 LINE L1 6707 6999 -51 5 1205 228 111 0 0 chr1 81381657 81381693 -115813739 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 5 1205 984 139 12 0 chr1 81381775 81381941 -115813491 - URR1A DNA MER1_type 0 226 59 5 1205 7002 64 3 3 chr1 81382031 81382925 -115812507 - L1_Mus1 LINE L1 -3 6564 5671 5 1205 180 77 0 0 chr1 81383220 81383246 -115812186 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 5 1205 7478 117 1 0 chr1 81383247 81384340 -115811092 - L1_Mm LINE L1 -206 5677 4584 5 1205 630 138 0 0 chr1 81384823 81384932 -115810500 + (TA)n Simple_repeat Simple_repeat 2 110 0 5 1205 35 54 0 0 chr1 81385158 81385214 -115810218 + AT_rich Low_complexity Low_complexity 1 56 0 6 1205 369 281 18 6 chr1 81385322 81385487 -115809945 - L1MDa LINE L1 -5435 1198 1032 6 1205 207 186 0 0 chr1 81385514 81385557 -115809875 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1205 24 0 0 0 chr1 81385654 81385678 -115809754 + AT_rich Low_complexity Low_complexity 1 24 0 6 1205 356 72 0 18 chr1 81386172 81386229 -115809203 + (TTA)n Simple_repeat Simple_repeat 1 56 0 6 1205 6305 200 30 18 chr1 81386229 81387516 -115807916 - Lx5 LINE L1 -11 7039 5737 6 1205 32737 68 3 2 chr1 81387555 81393780 -115801652 - L1Md_F2 LINE L1 -3 6579 349 6 1205 4934 151 56 13 chr1 81393781 81394753 -115800679 - L1_Mur2 LINE L1 -137 5740 4728 6 1205 1131 132 57 175 chr1 81394753 81394800 -115800632 + L1_Mur2 LINE L1 4397 4437 -1440 6 1205 2452 130 24 10 chr1 81394800 81395212 -115800220 + L1_Mus3 LINE L1 6218 6635 -3 6 1205 1131 132 57 175 chr1 81395212 81395513 -115799919 + L1_Mur2 LINE L1 4438 4704 -1173 6 1206 846 246 72 0 chr1 81396028 81396223 -115799209 + B3 SINE B2 2 210 -6 6 1206 263 61 0 0 chr1 81398356 81398389 -115797043 - L1Md_T LINE L1 -413 6169 6137 6 1206 940 31 0 8 chr1 81398389 81398517 -115796915 + L1Md_A LINE L1 6451 6577 -5 6 1206 491 288 0 57 chr1 81398529 81398669 -115796763 - B3A SINE B2 -62 136 5 6 1206 486 108 0 0 chr1 81399262 81399336 -115796096 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1206 651 65 0 0 chr1 81399751 81399844 -115795588 - L1_Mus1 LINE L1 0 6567 6475 6 1206 464 118 0 0 chr1 81399845 81399913 -115795519 + L1_Mus1 LINE L1 6159 6226 -341 6 1206 246 341 11 0 chr1 81400213 81400301 -115795131 - MTEa LTR MaLR -3 376 288 6 1206 1112 231 41 56 chr1 81400506 81401074 -115794358 + RMER19B LTR ERVK 1 902 0 6 1206 26 30 0 0 chr1 81401514 81401547 -115793885 + AT_rich Low_complexity Low_complexity 1 33 0 6 1206 444 314 122 79 chr1 81402380 81402874 -115792558 + MLT2B2 LTR ERVL 1 515 0 6 1206 275 364 47 41 chr1 81403054 81403226 -115792206 + MLT1A0 LTR MaLR 160 332 -33 6 1206 249 33 0 0 chr1 81403564 81403594 -115791838 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 6 1206 435 214 20 24 chr1 81404677 81404837 -115790595 + L1MA4 LINE L1 5780 5936 -364 6 1206 225 281 0 0 chr1 81404838 81404895 -115790537 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 6 1206 405 0 0 0 chr1 81405134 81405179 -115790253 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1206 491 330 10 70 chr1 81405210 81405409 -115790023 - B4A SINE B4 -20 272 86 6 1206 43 20 0 0 chr1 81407313 81407363 -115788069 + AT_rich Low_complexity Low_complexity 1 50 0 6 1206 933 176 0 0 chr1 81408099 81408275 -115787157 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 6 1206 540 334 36 63 chr1 81408395 81408562 -115786870 + MLT-int LTR MaLR 339 499 -1236 6 1206 5907 81 5 1 chr1 81408562 81409357 -115786075 + L1_Mus3 LINE L1 5841 6638 0 6 1206 540 334 36 63 chr1 81409357 81409524 -115785908 + MLT-int LTR MaLR 500 664 -1071 6 1206 363 295 144 0 chr1 81409825 81409998 -115785434 + MLT1A0-int LTR MaLR 1009 1206 -165 6 1206 2683 181 93 0 chr1 81410012 81410674 -115784758 - Lx4B LINE L1 -763 6295 5517 6 1206 395 143 11 32 chr1 81410681 81410775 -115784657 - L1Md_F3 LINE L1 -1 6583 6492 6 1206 1844 259 28 20 chr1 81410798 81411397 -115784035 + Lx4B LINE L1 6329 6921 -52 6 1206 198 0 0 0 chr1 81411401 81411423 -115784009 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1206 2182 190 24 28 chr1 81411556 81411979 -115783453 - MTC LTR MaLR 0 421 1 6 1206 584 332 116 13 chr1 81411987 81412298 -115783134 + MLT1A0 LTR MaLR 23 365 0 6 1206 4953 108 1 1 chr1 81412485 81413198 -115782234 - L1_Mus4 LINE L1 -7 6629 5917 6 1206 1032 347 13 32 chr1 81413205 81413732 -115781700 - Lx8 LINE L1 -157 7316 6800 6 1206 719 214 15 0 chr1 81413758 81413889 -115781543 - B1_Mur2 SINE Alu -8 141 9 6 1206 437 351 63 44 chr1 81414335 81414606 -115780826 - B4 SINE B4 -8 284 9 6 1206 195 69 0 0 chr1 81415625 81415654 -115779778 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1206 216 266 99 23 chr1 81415865 81415996 -115779436 - MIR SINE MIR -48 214 74 6 1206 24 0 0 0 chr1 81416142 81416166 -115779266 + AT_rich Low_complexity Low_complexity 1 24 0 6 1206 33601 37 2 0 chr1 81416243 81422246 -115773186 + L1Md_T LINE L1 1 5589 -297 6 1206 8921 7 2 0 chr1 81422246 81423240 -115772192 + L1Md_T LINE L1 5590 6585 0 6 1206 420 195 0 35 chr1 81423442 81423527 -115771905 - URR1B DNA MER1_type -1 224 143 6 1206 6679 134 18 3 chr1 81423535 81425049 -115770383 - L1_Mus4 LINE L1 -6 6630 5101 6 1206 360 0 0 0 chr1 81425053 81425093 -115770339 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 6 1206 7028 95 0 16 chr1 81425093 81426429 -115769003 - L1_Mus2 LINE L1 -1 6565 5250 6 1206 7645 70 19 2 chr1 81426424 81426685 -115768747 - L1VL4 LINE L1 -1533 2026 1762 6 1206 2844 96 12 12 chr1 81426685 81427107 -115768325 + L1Md_F2 LINE L1 6161 6582 0 6 1206 7645 87 12 2 chr1 81427107 81428528 -115766904 - L1VL4 LINE L1 -1798 1761 325 6 1206 484 249 36 116 chr1 81428530 81428650 -115766782 + MT2B LTR ERVL 56 269 -332 6 1206 923 81 0 0 chr1 81428650 81428773 -115766659 + B1_Mus1 SINE Alu 1 123 -25 6 1206 22 0 0 0 chr1 81428785 81428807 -115766625 + AT_rich Low_complexity Low_complexity 1 22 0 6 1206 313 311 22 0 chr1 81428814 81428904 -115766528 - URR1B DNA MER1_type -134 91 1 6 1206 394 125 25 0 chr1 81428989 81429069 -115766363 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1206 2196 163 42 12 chr1 81430598 81431007 -115764425 + MTC LTR MaLR 1 421 0 6 1206 205 219 14 14 chr1 81431241 81431315 -115764117 + CT-rich Low_complexity Low_complexity 3 76 0 6 1206 1106 167 39 43 chr1 81431579 81431786 -115763646 - RMER19A LTR ERVK -178 559 354 6 1206 363 96 0 0 chr1 81431787 81431839 -115763593 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1206 307 182 34 0 chr1 81431851 81431939 -115763493 - Lx4A LINE L1 0 7058 6968 6 1206 24 0 0 0 chr1 81431980 81432004 -115763428 + AT_rich Low_complexity Low_complexity 1 24 0 6 1206 25 0 0 0 chr1 81432220 81432245 -115763187 + AT_rich Low_complexity Low_complexity 1 25 0 6 1206 2782 183 72 2 chr1 81432262 81432848 -115762584 + Lx9 LINE L1 6789 7415 -229 6 1206 516 318 64 14 chr1 81432856 81433076 -115762356 - Lx8 LINE L1 -315 7158 6928 6 1206 398 320 58 27 chr1 81433226 81433451 -115761981 - L1MC LINE L1 -3737 2409 2178 6 1206 215 243 89 63 chr1 81434265 81434344 -115761088 - ID2 SINE ID -1 82 2 6 1206 424 296 101 47 chr1 81434596 81434745 -115760687 + RSINE1 SINE B4 9 165 0 6 1206 34 55 0 0 chr1 81436121 81436176 -115759256 + AT_rich Low_complexity Low_complexity 1 55 0 6 1206 34 42 0 0 chr1 81436282 81436330 -115759102 + AT_rich Low_complexity Low_complexity 1 48 0 6 1206 239 343 12 23 chr1 81436378 81436474 -115758958 + ID2 SINE ID 1 95 -57 6 1206 2114 142 12 0 chr1 81437308 81437631 -115757801 - ORR1A2 LTR MaLR 0 327 1 6 1206 21 36 0 0 chr1 81437792 81437820 -115757612 + AT_rich Low_complexity Low_complexity 1 28 0 6 1206 3870 69 24 35 chr1 81438039 81438578 -115756854 - L1_Mus2 LINE L1 0 6566 6034 6 1206 1028 66 22 0 chr1 81438578 81438714 -115756718 + B2_Mm2 SINE B2 20 158 -37 6 1206 2138 110 110 0 chr1 81438723 81439060 -115756372 - Lx2B LINE L1 -5 6995 6622 6 1206 1814 130 32 3 chr1 81439061 81439370 -115756062 + Lx LINE L1 5785 6102 -898 6 1206 2196 116 36 34 chr1 81439672 81440057 -115755375 + Lx LINE L1 6266 6651 -3 6 1206 966 262 121 0 chr1 81440141 81440423 -115755009 + Lx9 LINE L1 6499 6814 -830 6 1206 25355 70 10 4 chr1 81440452 81445873 -115749559 + L1Md_T LINE L1 220 5589 -297 6 1206 8314 33 3 0 chr1 81445873 81446906 -115748526 + L1Md_T LINE L1 5590 6585 0 6 1206 6905 53 0 0 chr1 81446908 81447763 -115747669 + L1Md_F2 LINE L1 4732 5586 -297 6 1206 7806 59 4 1 chr1 81447763 81448753 -115746679 + L1Md_F2 LINE L1 5587 6579 -3 6 1206 2616 222 21 52 chr1 81448763 81449443 -115745989 + Lx9 LINE L1 6859 7517 -127 6 1206 438 143 0 0 chr1 81449443 81449520 -115745912 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1206 408 40 0 0 chr1 81449610 81449660 -115745772 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1206 271 244 51 22 chr1 81449668 81449806 -115745626 + Lx9 LINE L1 7503 7644 0 6 1206 207 69 0 0 chr1 81450748 81450777 -115744655 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1206 243 282 51 0 chr1 81451510 81451588 -115743844 + MLT1C LTR MaLR 216 297 -170 6 1206 180 0 0 0 chr1 81451897 81451917 -115743515 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1206 776 299 165 14 chr1 81452036 81452431 -115743001 + LTR80A LTR ERVL 4 454 -129 6 1206 234 274 0 52 chr1 81452785 81452862 -115742570 + B4A SINE B4 74 146 -146 6 1206 423 228 44 66 chr1 81452809 81452945 -115742487 + B1F SINE Alu 10 142 -7 6 1206 240 241 0 0 chr1 81453167 81453246 -115742186 + GA-rich Low_complexity Low_complexity 2 80 0 6 1206 587 315 28 6 chr1 81453277 81453456 -115741976 - ORR1E LTR MaLR -172 187 5 6 1206 189 0 0 0 chr1 81453727 81453748 -115741684 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 6 1206 458 311 110 13 chr1 81457064 81457348 -115738084 - MER58B DNA MER1_type -19 322 3 6 1206 569 49 12 0 chr1 81457628 81457709 -115737723 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1206 697 318 77 22 chr1 81457760 81458033 -115737399 - B4A SINE B4 -4 288 1 6 1206 2167 87 99 3 chr1 81458054 81458376 -115737056 - MTB_Mm LTR MaLR -54 353 1 6 1206 416 242 44 36 chr1 81458402 81458539 -115736893 - Lx7 LINE L1 0 7696 7559 6 1206 497 272 107 16 chr1 81458586 81458773 -115736659 + Lx7 LINE L1 7089 7292 -404 6 1206 509 244 190 43 chr1 81459703 81459956 -115735476 - Lx9 LINE L1 -126 7518 7229 6 1206 28 0 0 0 chr1 81460366 81460394 -115735038 + AT_rich Low_complexity Low_complexity 1 28 0 6 1206 7714 42 1 7 chr1 81460403 81461352 -115734080 - L1Md_F2 LINE L1 -1 6581 5639 6 1206 6405 106 18 8 chr1 81461347 81462320 -115733112 - Lx3A LINE L1 -26 6955 5974 7 1206 21 71 0 0 chr1 81462631 81462673 -115732759 + AT_rich Low_complexity Low_complexity 1 42 0 7 1206 3013 87 5 5 chr1 81462871 81463297 -115732135 - RLTR1C LTR ERV1 -16 487 62 7 1206 15586 63 2 0 chr1 81463297 81465314 -115730118 + L1Md_F2 LINE L1 3564 5584 -299 7 1206 7975 48 3 1 chr1 81465316 81466309 -115729123 + L1Md_F2 LINE L1 5587 6581 -1 7 1206 1150 179 92 37 chr1 81466312 81466585 -115728847 - MTC-int LTR MaLR -134 1124 837 7 1206 1430 193 49 13 chr1 81466583 81466887 -115728545 - MTC-int LTR MaLR -941 317 3 7 1206 1578 217 142 8 chr1 81466892 81467259 -115728173 - MTC LTR MaLR -5 416 1 7 1206 22 70 0 0 chr1 81468209 81468252 -115727180 + AT_rich Low_complexity Low_complexity 1 43 0 7 1206 945 138 31 0 chr1 81468527 81468686 -115726746 + B2_Mm2 SINE B2 1 164 -31 7 1206 639 0 0 0 chr1 81468693 81468764 -115726668 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 7 1206 40 49 0 0 chr1 81469555 81469616 -115725816 + AT_rich Low_complexity Low_complexity 1 61 0 7 1206 505 289 31 21 chr1 81470172 81470366 -115725066 - L1M5 LINE L1 -372 5752 5557 7 1206 196 313 74 65 chr1 81470865 81471082 -115724350 + MIR SINE MIR 15 236 -32 7 1206 916 249 85 11 chr1 81471390 81471552 -115723880 - Lx6 LINE L1 -10 7450 7287 7 1206 180 0 0 0 chr1 81471552 81471572 -115723860 + (TATAA)n Simple_repeat Simple_repeat 4 23 0 7 1206 1870 235 191 35 chr1 81471572 81472212 -115723220 - Lx6 LINE L1 -174 7286 6536 7 1206 1226 296 69 3 chr1 81472213 81472545 -115722887 - MTE2b LTR MaLR -24 355 2 7 1206 321 370 30 0 chr1 81473258 81473393 -115722039 + B1F1 SINE Alu 11 149 0 7 1206 351 0 0 0 chr1 81474131 81474170 -115721262 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1206 22 56 0 0 chr1 81476349 81476385 -115719047 + AT_rich Low_complexity Low_complexity 1 36 0 7 1206 295 310 34 11 chr1 81477247 81477335 -115718097 + RSINE1 SINE B4 36 125 -40 7 1206 218 274 55 21 chr1 81477344 81477419 -115718013 - PB1D10 SINE Alu -60 89 16 7 1206 1162 302 113 8 chr1 81477892 81478289 -115717143 + MER54A LTR ERVL 463 901 0 7 1206 1159 268 77 21 chr1 81480321 81480709 -115714723 + MTD LTR MaLR 10 419 0 7 1206 888 266 68 4 chr1 81481120 81481354 -115714078 - B4 SINE B4 -43 249 1 7 1206 360 0 0 0 chr1 81481486 81481526 -115713906 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1206 323 349 54 14 chr1 81482055 81482203 -115713229 - MLT1J1 LTR MaLR 0 444 291 7 1206 244 282 0 66 chr1 81482374 81482450 -115712982 - MLT1J1 LTR MaLR -367 77 7 7 1206 458 143 114 18 chr1 81483328 81483442 -115711990 + Lx9 LINE L1 7519 7643 -1 7 1206 26 50 0 0 chr1 81484001 81484041 -115711391 + AT_rich Low_complexity Low_complexity 1 40 0 7 1206 430 286 137 0 chr1 81484185 81484433 -115710999 + L1MC3 LINE L1 7434 7715 -70 7 1206 27 0 0 0 chr1 81484879 81484906 -115710526 + AT_rich Low_complexity Low_complexity 1 27 0 7 1206 1308 261 98 29 chr1 81485969 81486419 -115709013 - Lx6 LINE L1 -26 7434 6954 7 1206 997 310 66 11 chr1 81486432 81486571 -115708861 - Lx6 LINE L1 -575 6885 6749 7 1206 333 0 0 0 chr1 81486571 81486608 -115708824 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1206 997 318 55 10 chr1 81486608 81486859 -115708573 - Lx6 LINE L1 -712 6748 6259 7 1206 1145 88 0 0 chr1 81487519 81487666 -115707766 + B1_Mus1 SINE Alu 2 148 0 7 1206 25 31 0 0 chr1 81487755 81487787 -115707645 + AT_rich Low_complexity Low_complexity 1 32 0 7 1206 1410 74 11 0 chr1 81487787 81487977 -115707455 + B2_Mm1t SINE B2 2 193 0 7 1206 35522 42 1 8 chr1 81488109 81493125 -115702307 + L1Md_F2 LINE L1 614 5585 -298 7 1206 7953 46 2 2 chr1 81493126 81494110 -115701322 + L1Md_F2 LINE L1 5587 6570 -12 7 1206 926 224 8 90 chr1 81494665 81494910 -115700522 - URR1A DNA MER1_type -1 225 1 7 1206 31230 37 0 0 chr1 81495050 81500000 -115695432 + L1Md_Gf LINE L1 71 5117 -769 7 1206 4086 17 0 0 chr1 81500000 81500472 -115694960 + L1Md_T LINE L1 5115 5586 -297 1 1206 8961 6 0 0 chr1 81500472 81501468 -115693964 + L1Md_T LINE L1 5587 6582 0 1 1206 234 0 0 0 chr1 81501498 81501524 -115693908 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1206 291 331 111 31 chr1 81502728 81502890 -115692542 - B4A SINE B4 -117 175 1 3 1206 386 279 60 67 chr1 81503192 81503342 -115692090 - MLT2B2 LTR ERVL 0 562 414 4 1206 287 333 12 0 chr1 81503502 81503583 -115691849 + MLT1F2 LTR MaLR 54 135 -425 5 1206 459 324 28 7 chr1 81504368 81504511 -115690921 + RSINE1 SINE B4 3 148 -17 6 1206 228 67 0 0 chr1 81505210 81505240 -115690192 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 7 1206 218 200 0 0 chr1 81505242 81505282 -115690150 - L2a LINE L2 -7 3419 3380 8 1206 253 282 34 45 chr1 81505922 81506011 -115689421 + RSINE1 SINE B4 78 165 0 9 1206 209 194 0 0 chr1 81506011 81506047 -115689385 + (CATG)n Simple_repeat Simple_repeat 3 38 0 1 1206 23 0 0 0 chr1 81506070 81506093 -115689339 + AT_rich Low_complexity Low_complexity 1 23 0 1 1206 273 57 0 0 chr1 81506270 81506305 -115689127 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1206 1133 275 9 45 chr1 81506372 81506707 -115688725 - Lx7 LINE L1 -426 7270 6948 1 1206 577 203 67 41 chr1 81507855 81508050 -115687382 + RMER19B LTR ERVK 1 171 -731 1 1206 733 114 8 42 chr1 81508056 81508175 -115687257 + RMER19B LTR ERVK 645 759 -143 1 1206 279 0 0 0 chr1 81508175 81508206 -115687226 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1206 24 103 0 0 chr1 81508221 81508308 -115687124 + AT_rich Low_complexity Low_complexity 1 87 0 1 1206 7495 28 0 0 chr1 81508589 81509460 -115685972 - L1Md_A LINE L1 0 6582 5712 1 1206 688 137 68 0 chr1 81509460 81509577 -115685855 + RMER19B LTR ERVK 766 890 -12 1 1206 1330 67 56 0 chr1 81510274 81510453 -115684979 - B2_Mm2 SINE B2 -6 189 1 1 1206 269 263 26 0 chr1 81511421 81511497 -115683935 - L1M2 LINE L1 -887 5410 5333 2 1206 705 181 208 6 chr1 81511556 81511724 -115683708 + B3 SINE B2 15 216 0 2 1206 433 275 155 8 chr1 81511757 81512021 -115683411 - L1M2 LINE L1 -854 5289 4987 2 1206 346 333 0 0 chr1 81512047 81512164 -115683268 - L1M2 LINE L1 -2002 4141 4025 2 1206 198 0 0 0 chr1 81512308 81512330 -115683102 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2 1206 476 244 64 123 chr1 81512512 81512699 -115682733 - B3 SINE B2 -36 180 5 2 1206 257 350 95 32 chr1 81512714 81512903 -115682529 + B4 SINE B4 90 290 -2 2 1206 267 152 0 0 chr1 81514254 81514300 -115681132 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1206 1131 75 0 0 chr1 81515043 81515190 -115680242 + B1_Mus1 SINE Alu 1 147 -1 2 1206 249 86 34 17 chr1 81515190 81515249 -115680183 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 2 1206 615 48 0 0 chr1 81515597 81515680 -115679752 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1206 417 20 0 0 chr1 81515770 81515820 -115679612 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1206 229 273 70 43 chr1 81519332 81519447 -115675985 - L1MD2 LINE L1 -376 5983 5866 3 1206 610 319 57 4 chr1 81519644 81519871 -115675561 - L4 LINE RTE -186 1843 1605 3 1206 250 213 0 32 chr1 81520154 81520217 -115675215 - L1M5 LINE L1 -502 5671 5611 3 1206 283 245 31 21 chr1 81520499 81520595 -115674837 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 3 1206 1980 312 80 37 chr1 81520747 81521408 -115674024 + Lx7 LINE L1 4059 4762 -1118 3 1206 1863 183 16 30 chr1 81521408 81521780 -115673652 + ORR1B2 LTR MaLR 1 367 0 3 1206 1980 311 74 43 chr1 81521780 81522895 -115672537 + Lx7 LINE L1 4763 5908 -1788 3 1206 252 86 0 0 chr1 81524504 81524539 -115670893 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1206 895 215 23 5 chr1 81524952 81525167 -115670265 + RMER1B Other Other 837 1055 -11 3 150 18321 68 1 1 chr1 81525451 81527860 -115667572 + L1Md_F2 LINE L1 3176 5585 -298 3 1207 7834 61 6 0 chr1 81527861 81528851 -115666581 + L1Md_F2 LINE L1 5587 6582 0 3 1207 495 287 6 30 chr1 81529240 81529409 -115666023 + Charlie12 DNA MER1_type 2706 2870 -3 3 1207 540 366 55 68 chr1 81530464 81531068 -115664364 - MLT1E3 LTR MaLR -28 596 1 4 1207 260 355 195 17 chr1 81531064 81531351 -115664081 + Arthur1 DNA Tip100 1 338 -3609 4 1207 318 336 74 31 chr1 81531569 81531827 -115663605 + Arthur1 DNA Tip100 3051 3319 -628 4 1207 878 299 77 31 chr1 81531922 81532274 -115663158 + ORR1D2 LTR MaLR 3 370 0 4 1207 387 182 54 18 chr1 81532895 81533176 -115662256 + (TA)n Simple_repeat Simple_repeat 1 291 0 4 1207 5706 102 88 18 chr1 81534626 81535520 -115659912 + RMER17B LTR ERVK 1 957 -1 4 1207 194 279 48 16 chr1 81536828 81536890 -115658542 + L2b LINE L2 3234 3297 -78 4 1207 217 0 61 0 chr1 81537268 81537301 -115658131 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1207 180 27 81 0 chr1 81537649 81537686 -115657746 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1207 1213 35 0 0 chr1 81537694 81537835 -115657597 - B1_Mm SINE Alu -6 141 1 4 1207 563 40 14 0 chr1 81540126 81540200 -115655232 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1207 345 140 0 0 chr1 81541538 81541595 -115653837 + (GAA)n Simple_repeat Simple_repeat 1 57 0 5 1207 646 295 109 14 chr1 81541659 81541934 -115653498 + MLT1D LTR MaLR 180 480 -25 5 1207 391 320 20 10 chr1 81543079 81543180 -115652252 + RSINE1 SINE B4 3 104 -61 5 1207 574 13 27 0 chr1 81543196 81543271 -115652161 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 1207 26 30 0 0 chr1 81543293 81543326 -115652106 + AT_rich Low_complexity Low_complexity 1 33 0 5 1207 183 277 93 51 chr1 81543447 81543565 -115651867 + MIR3 SINE MIR 7 129 -79 5 1207 252 276 61 87 chr1 81544139 81544254 -115651178 - BC1_Mm scRNA scRNA -37 115 4 5 1207 266 341 132 0 chr1 81545593 81545722 -115649710 + L2a LINE L2 3280 3425 -1 5 1207 202 73 0 47 chr1 81545853 81545896 -115649536 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1207 183 80 0 0 chr1 81546922 81546947 -115648485 + (GGAGAA)n Simple_repeat Simple_repeat 1 25 0 5 1207 295 344 53 38 chr1 81548382 81548515 -115646917 + B1F SINE Alu 8 142 -7 6 1207 233 340 26 32 chr1 81548622 81548777 -115646655 - MER99 DNA hAT? -395 436 283 6 1207 1270 43 0 0 chr1 81549029 81549191 -115646241 - L1Md_F2 LINE L1 -14 6568 6407 6 1207 336 75 38 0 chr1 81550276 81550329 -115645103 - ORR1A0 LTR MaLR 0 394 340 6 1207 2109 49 4 4 chr1 81552215 81552480 -115642952 + L1_Mus1 LINE L1 6294 6558 -9 6 1207 765 33 0 0 chr1 81552517 81552609 -115642823 + (GGGGA)n Simple_repeat Simple_repeat 1 92 0 6 1207 371 73 0 18 chr1 81552843 81552899 -115642533 + (TTG)n Simple_repeat Simple_repeat 1 55 0 6 1207 872 185 19 0 chr1 81554081 81554238 -115641194 - ORR1A0 LTR MaLR -80 266 107 6 1207 340 169 17 0 chr1 81554223 81554282 -115641150 - ORR1A0 LTR MaLR -167 227 168 6 1207 324 48 0 0 chr1 81555024 81555066 -115640366 + (CCA)n Simple_repeat Simple_repeat 3 44 0 6 1207 9293 15 0 0 chr1 81555145 81556896 -115638536 - L1Md_A LINE L1 0 6582 4832 6 1207 387 0 0 0 chr1 81558283 81558326 -115637106 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1207 189 0 0 0 chr1 81558326 81558346 -115637086 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1207 369 0 0 0 chr1 81558364 81558405 -115637027 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1207 297 0 0 0 chr1 81558550 81558583 -115636849 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1207 420 341 101 47 chr1 81558615 81558892 -115636540 - B4A SINE B4 0 292 1 7 1207 252 0 0 0 chr1 81559092 81559120 -115636312 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1207 1878 231 139 36 chr1 81559412 81559964 -115635468 + RLTR17 LTR ERVK 1 609 -83 7 1207 22 0 0 0 chr1 81560527 81560549 -115634883 + AT_rich Low_complexity Low_complexity 1 22 0 7 1207 2856 21 0 48 chr1 81560743 81561097 -115634335 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1207 53764 16 17 1 chr1 81561097 81567470 -115627962 - IAPEz-int LTR ERVK 0 6481 8 7 1207 2856 21 0 48 chr1 81567470 81567824 -115627608 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1207 719 294 100 20 chr1 81568009 81568360 -115627072 + L1M4 LINE L1 331 709 -5833 7 1207 566 219 91 52 chr1 81568514 81568668 -115626764 - RSINE1 SINE B4 0 165 6 7 1207 248 304 10 10 chr1 81569353 81569456 -115625976 + L1M4 LINE L1 4033 4135 -2509 7 1207 338 351 104 13 chr1 81569896 81570127 -115625305 + L1M4 LINE L1 5530 5781 -863 7 1207 695 191 0 6 chr1 81570130 81570293 -115625139 + (TA)n Simple_repeat Simple_repeat 2 163 0 8 1207 299 308 29 44 chr1 81570338 81570542 -115624890 + L1M4 LINE L1 5859 6059 -619 7 1207 434 283 28 0 chr1 81571038 81571144 -115624288 + MER5A DNA MER1_type 37 145 -44 8 1207 5250 93 7 16 chr1 81571447 81572202 -115623230 + Lx LINE L1 5905 6652 -2 8 1207 646 306 122 62 chr1 81572575 81572895 -115622537 - MTEb LTR MaLR -6 373 35 8 1207 1395 154 5 0 chr1 81572895 81573115 -115622317 - URR1A DNA MER1_type 0 226 6 8 1207 1481 268 5 14 chr1 81573357 81573781 -115621651 + Lx7 LINE L1 6882 7301 -395 8 1207 371 222 8 0 chr1 81573806 81573923 -115621509 + CT-rich Low_complexity Low_complexity 2 119 0 8 1207 1107 73 0 0 chr1 81575324 81575474 -115619958 + (CA)n Simple_repeat Simple_repeat 2 151 0 8 1207 399 288 16 41 chr1 81575476 81575599 -115619833 - MTD LTR MaLR 0 421 302 8 1207 674 256 26 48 chr1 81575593 81575689 -115619743 - MTD LTR MaLR -232 187 94 8 1207 2937 61 200 9 chr1 81575689 81576119 -115619313 - RLTR1B LTR ERV1 0 512 1 8 1207 674 256 26 48 chr1 81576119 81576211 -115619221 - MTD LTR MaLR -326 93 3 8 1207 2238 81 62 0 chr1 81576881 81577189 -115618243 + ORR1A2 LTR MaLR 1 327 0 9 1207 419 334 7 59 chr1 81578322 81578508 -115616924 + MLT1A1 LTR MaLR 185 370 -38 9 1207 503 244 117 39 chr1 81579479 81579658 -115615774 + B4A SINE B4 91 283 -9 9 1207 222 91 0 0 chr1 81579881 81579914 -115615518 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1207 234 455 5 102 chr1 81580004 81580190 -115615242 + LTR33A_ LTR ERVL 214 381 -150 9 1207 442 329 91 114 chr1 81581300 81581501 -115613931 + MER31B LTR ERV1 38 220 -246 9 1207 1116 68 0 14 chr1 81581501 81581649 -115613783 - B1_Mus2 SINE Alu 0 147 2 9 1207 442 329 91 114 chr1 81581649 81581886 -115613546 + MER31B LTR ERV1 221 466 0 9 1207 1009 306 62 26 chr1 81585320 81585672 -115609760 - MTE2b LTR MaLR -13 366 2 9 1207 678 90 27 0 chr1 81586548 81586659 -115608773 - L1Md_F3 LINE L1 -2 6582 6469 9 1207 195 129 0 0 chr1 81586962 81586993 -115608439 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1207 23 0 0 0 chr1 81587652 81587675 -115607757 + AT_rich Low_complexity Low_complexity 1 23 0 1 1207 297 0 0 0 chr1 81588169 81588202 -115607230 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1207 807 245 33 19 chr1 81588314 81588526 -115606906 - B3 SINE B2 0 216 2 1 1207 509 0 16 0 chr1 81589463 81589524 -115605908 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1207 236 77 26 0 chr1 81589707 81589746 -115605686 + (TGG)n Simple_repeat Simple_repeat 2 41 0 1 1207 441 0 0 0 chr1 81589767 81589816 -115605616 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1207 792 0 0 0 chr1 81591099 81591187 -115604245 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 1 1207 288 0 0 0 chr1 81592560 81592592 -115602840 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1207 238 219 123 0 chr1 81592654 81592727 -115602705 - L1MB7 LINE L1 -19 6165 6084 1 1207 3821 206 102 37 chr1 81592766 81593728 -115601704 - RMER1A Other Other -6 1024 1 1 1207 1217 274 143 25 chr1 81593705 81594180 -115601252 - RMER1B Other Other -528 538 8 1 1207 445 363 61 9 chr1 81594630 81595056 -115600376 - L1M4 LINE L1 -357 5821 5374 1 1207 1794 143 11 96 chr1 81596500 81596856 -115598576 - ORR1A3 LTR MaLR 0 326 1 1 1207 822 292 24 0 chr1 81597157 81597366 -115598066 - B3 SINE B2 0 216 3 1 1207 276 269 45 0 chr1 81599585 81599652 -115595780 + MTE2a LTR MaLR 246 315 -64 1 1207 546 43 0 0 chr1 81600273 81600342 -115595090 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1207 379 302 76 75 chr1 81600608 81600975 -115594457 - MLT1A1 LTR MaLR -2 406 1 1 1207 243 270 16 16 chr1 81601135 81601199 -115594233 + RSINE1 SINE B4 3 66 -99 1 1207 333 0 0 0 chr1 81601276 81601313 -115594119 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1207 324 0 0 0 chr1 81601443 81601479 -115593953 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1207 279 0 0 0 chr1 81601479 81601509 -115593923 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1207 423 0 0 0 chr1 81601736 81601783 -115593649 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1 1207 990 167 0 0 chr1 81601783 81601963 -115593469 + GA-rich Low_complexity Low_complexity 1 180 0 1 1207 21 0 0 0 chr1 81603184 81603205 -115592227 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 6511 100 21 37 chr1 81603275 81604310 -115591122 - Lx3_Mus LINE L1 -1 7008 5990 1 1207 378 61 0 0 chr1 81604573 81604622 -115590810 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1207 216 158 0 0 chr1 81605143 81605181 -115590251 + CT-rich Low_complexity Low_complexity 3 40 0 1 1207 212 167 0 0 chr1 81606931 81606973 -115588459 + A-rich Low_complexity Low_complexity 1 42 0 1 1207 1871 222 92 22 chr1 81607251 81607739 -115587693 + RLTR11A2 LTR ERVK 6 527 0 1 1207 270 0 0 0 chr1 81607877 81607907 -115587525 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1207 476 32 16 0 chr1 81608172 81608234 -115587198 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 1207 307 333 0 73 chr1 81608279 81608415 -115587017 + MIRb SINE MIR 36 161 -107 1 1207 405 0 0 0 chr1 81608694 81608739 -115586693 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1207 540 243 0 35 chr1 81608749 81608864 -115586568 - B1_Mur1 SINE Alu -26 123 13 1 1207 3120 130 15 7 chr1 81608865 81609370 -115586062 + RLTR1C LTR ERV1 1 519 0 1 1207 244 345 137 0 chr1 81609547 81609686 -115585746 + Charlie4z DNA MER1_type 1 158 -9 1 1207 250 333 250 0 chr1 81611026 81611158 -115584274 - MER45A DNA Tip100 -13 165 1 1 1207 1237 362 96 51 chr1 81612633 81613532 -115581900 - MTE-int LTR MaLR -318 1262 324 1 1207 525 325 15 15 chr1 81613600 81613800 -115581632 - MTE-int LTR MaLR -1380 200 1 1 1207 253 227 0 132 chr1 81613859 81613913 -115581519 + MTEa LTR MaLR 1 44 -335 1 1207 397 270 192 76 chr1 81613913 81614085 -115581347 + B3A SINE B2 2 193 -5 1 1207 715 263 72 86 chr1 81614122 81614401 -115581031 + MTEa LTR MaLR 101 375 -4 1 1207 533 332 10 30 chr1 81614546 81614566 -115580866 - ORR1E LTR MaLR -164 195 176 1 1207 663 48 0 0 chr1 81614566 81614649 -115580783 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1207 533 332 10 30 chr1 81614649 81614827 -115580605 - ORR1E LTR MaLR -184 175 2 1 1207 288 405 70 31 chr1 81615026 81615484 -115579948 + LTR78 LTR ERV1 813 1288 -16 1 1207 319 344 36 66 chr1 81616068 81616205 -115579227 + B4 SINE B4 67 199 -93 1 1207 650 229 8 0 chr1 81616107 81616240 -115579192 + B1F SINE Alu 13 140 -9 1 1207 410 204 0 10 chr1 81616273 81616372 -115579060 + GA-rich Low_complexity Low_complexity 2 99 0 1 1207 686 55 23 45 chr1 81616451 81616584 -115578848 + (GGGGA)n Simple_repeat Simple_repeat 4 133 0 1 1207 1299 79 0 0 chr1 81616584 81616761 -115578671 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 1 1207 225 94 0 0 chr1 81617919 81617951 -115577481 + (ATGGTG)n Simple_repeat Simple_repeat 5 36 0 1 1207 1717 123 18 71 chr1 81618165 81618283 -115577149 - RLTRETN_Mm LTR ERVK 0 322 209 1 1207 4115 53 4 34 chr1 81618283 81618811 -115576621 - LTRIS3 LTR ERV1 0 512 1 1 1207 1717 123 18 71 chr1 81618811 81619032 -115576400 - RLTRETN_Mm LTR ERVK -114 208 1 1 1207 25 0 0 0 chr1 81619342 81619367 -115576065 + AT_rich Low_complexity Low_complexity 1 25 0 1 1207 427 184 20 10 chr1 81619505 81619604 -115575828 + RLTR15 LTR ERVK 34 133 -226 1 1207 336 187 63 56 chr1 81619742 81619884 -115575548 + RLTR15 LTR ERVK 200 342 -17 1 1207 28 29 0 0 chr1 81619886 81619921 -115575511 + AT_rich Low_complexity Low_complexity 1 35 0 1 1207 405 0 0 0 chr1 81620275 81620320 -115575112 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1207 283 336 84 13 chr1 81620505 81620659 -115574773 + MIR SINE MIR 1 165 -97 1 1207 318 87 0 0 chr1 81621331 81621377 -115574055 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1207 189 94 0 0 chr1 81621493 81621525 -115573907 + (CATA)n Simple_repeat Simple_repeat 3 34 0 1 1207 363 121 0 0 chr1 81622216 81622274 -115573158 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1207 2553 140 204 25 chr1 81622300 81622870 -115572562 + RMER6C LTR ERVK 3 674 -16 1 1207 420 361 62 103 chr1 81622911 81623183 -115572249 - B4 SINE B4 0 292 32 1 1207 344 306 81 72 chr1 81624364 81624794 -115570638 + L1MC2 LINE L1 3 436 -6072 1 1207 477 234 37 18 chr1 81625075 81625086 -115570346 - RSINE1 SINE B4 -6 159 149 1 1207 369 0 0 0 chr1 81625086 81625127 -115570305 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1207 477 234 37 18 chr1 81625127 81625224 -115570208 - RSINE1 SINE B4 -17 148 50 1 1207 237 264 152 11 chr1 81625255 81625347 -115570085 - Tigger5 DNA MER2_type -2300 106 2 1 1207 573 105 0 0 chr1 81625400 81625486 -115569946 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1207 795 282 63 56 chr1 81625495 81625765 -115569667 - B4 SINE B4 -14 278 7 1 1207 385 267 26 0 chr1 81625768 81625884 -115569548 + L1MC2 LINE L1 493 611 -5897 1 1207 371 235 15 162 chr1 81625989 81626187 -115569245 + L1MC2 LINE L1 5472 5640 -2320 1 1207 255 207 0 17 chr1 81626256 81626315 -115569117 + L1MC2 LINE L1 6446 6503 -16 1 1207 559 124 46 29 chr1 81626449 81626693 -115568739 + (TAGA)n Simple_repeat Simple_repeat 1 248 0 1 1207 257 302 62 10 chr1 81627226 81627323 -115568109 + L3b LINE CR1 374 475 -7 1 1207 378 0 0 0 chr1 81627437 81627479 -115567953 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1207 464 160 10 0 chr1 81628651 81628751 -115566681 + CT-rich Low_complexity Low_complexity 1 101 0 1 1207 473 32 0 16 chr1 81628751 81628815 -115566617 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1207 675 293 83 11 chr1 81628819 81629085 -115566347 - B4 SINE B4 -7 285 1 1 1207 692 320 20 5 chr1 81629933 81630134 -115565298 - ID_B1 SINE B4 -3 221 18 1 1207 247 275 14 0 chr1 81630299 81630368 -115565064 - Lx8 LINE L1 -730 6743 6674 1 1207 809 245 58 5 chr1 81630367 81630572 -115564860 + Lx8 LINE L1 6967 7182 -291 1 1207 1205 51 6 0 chr1 81630742 81630899 -115564533 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 1 1207 1941 49 0 0 chr1 81630998 81631242 -115564190 + L1Md_F2 LINE L1 5343 5586 -297 1 1207 8288 35 3 2 chr1 81631242 81632232 -115563200 + L1Md_F2 LINE L1 5587 6577 -5 1 1207 242 284 30 0 chr1 81632383 81632450 -115562982 - MLT1B LTR MaLR 0 390 322 1 1207 518 306 89 58 chr1 81632870 81633061 -115562371 - B3A SINE B2 0 198 2 1 1207 790 274 64 107 chr1 81633521 81634085 -115561347 + RMER13A LTR ERVK 14 595 -32 1 1207 6452 139 20 1 chr1 81634233 81635274 -115560158 + Lx2 LINE L1 5936 6996 -1 1 1207 301 340 50 74 chr1 81635366 81635649 -115559783 - B4 SINE B4 -15 277 2 1 1207 355 315 48 0 chr1 81635820 81635937 -115559495 - PB1D9 SINE Alu -5 144 16 1 1207 270 0 0 0 chr1 81636326 81636356 -115559076 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1207 240 137 0 0 chr1 81636863 81636914 -115558518 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1207 278 307 40 0 chr1 81636993 81637068 -115558364 - PB1 SINE Alu -27 100 23 1 1207 489 17 0 0 chr1 81637068 81637126 -115558306 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1207 23 0 0 0 chr1 81637288 81637311 -115558121 + AT_rich Low_complexity Low_complexity 1 23 0 1 1207 222 295 0 0 chr1 81637695 81637756 -115557676 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1 1207 21 36 0 0 chr1 81637845 81637873 -115557559 + AT_rich Low_complexity Low_complexity 1 28 0 1 1207 400 206 16 0 chr1 81638379 81638505 -115556927 + (TA)n Simple_repeat Simple_repeat 2 129 0 1 1207 1513 205 58 68 chr1 81638533 81638861 -115556571 - MTC LTR MaLR -9 412 82 1 1207 1069 82 0 0 chr1 81638861 81638996 -115556436 + B1_Mus2 SINE Alu 2 136 -11 1 1207 1513 205 58 68 chr1 81638996 81639049 -115556383 - MTC LTR MaLR -340 81 36 1 1207 314 250 0 24 chr1 81639127 81639209 -115556223 + URR1B DNA MER1_type 110 189 -36 1 1207 279 367 165 31 chr1 81639308 81639502 -115555930 - MLT2B3 LTR ERVL -82 472 253 1 1207 360 326 109 0 chr1 81639537 81639684 -115555748 - MLT2B3 LTR ERVL -386 168 6 1 1207 654 215 34 54 chr1 81639770 81639970 -115555462 - RLTR9C LTR ERVK 0 409 188 1 1207 1707 115 30 66 chr1 81639982 81640316 -115555116 - RLTRETN_Mm LTR ERVK 0 322 1 1 1207 1026 162 24 57 chr1 81640317 81640527 -115554905 - RLTR9C LTR ERVK -190 203 1 1 1207 443 133 0 0 chr1 81640527 81640602 -115554830 - ETnERV2-int LTR ERVK -1 7405 7331 1 1207 14779 202 28 23 chr1 81640818 81644869 -115550563 - ETnERV2-int LTR ERVK -1179 6227 1597 1 1207 10160 135 10 8 chr1 81644924 81646574 -115548858 - ETnERV2-int LTR ERVK -1660 1654 2 1 1207 1050 197 81 116 chr1 81646575 81646982 -115548450 - RLTR9C LTR ERVK 0 393 1 1 1207 281 367 7 26 chr1 81649013 81649167 -115546265 + RSINE1 SINE B4 4 154 -11 1 1207 411 83 0 0 chr1 81649181 81649241 -115546191 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1207 30 83 0 0 chr1 81649438 81649510 -115545922 + AT_rich Low_complexity Low_complexity 1 72 0 2 1207 853 129 133 12 chr1 81649697 81649862 -115545570 - MER121 Unknown Unknown -96 316 132 2 1207 719 347 39 28 chr1 81650141 81650423 -115545009 - B4A SINE B4 0 292 8 2 1207 510 61 0 0 chr1 81651000 81651066 -115544366 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 2 1207 582 324 119 48 chr1 81651096 81651433 -115543999 + MLT1B LTR MaLR 1 361 -29 2 1207 237 231 0 177 chr1 81652208 81652287 -115543145 + MTE2b LTR MaLR 11 75 -304 2 1207 723 273 18 0 chr1 81652299 81652464 -115542968 + MTE2b LTR MaLR 58 225 -154 2 1207 555 56 0 0 chr1 81653192 81653263 -115542169 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2 1207 1054 83 0 0 chr1 81653266 81653398 -115542034 - B1_Mm SINE Alu -14 133 2 2 1207 208 313 151 18 chr1 81653879 81654045 -115541387 + L2a LINE L2 3228 3415 -11 2 1207 517 298 97 59 chr1 81654654 81654995 -115540437 + MLT1C LTR MaLR 5 467 0 2 1207 27 29 0 0 chr1 81655476 81655510 -115539922 + AT_rich Low_complexity Low_complexity 1 34 0 2 1207 243 83 0 0 chr1 81656025 81656033 -115539399 + (TA)n Simple_repeat Simple_repeat 1 8 0 2 1207 453 36 0 0 chr1 81656033 81656088 -115539344 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1207 243 83 0 0 chr1 81656088 81656115 -115539317 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1207 479 243 183 59 chr1 81656291 81656614 -115538818 + L1MA9 LINE L1 5908 6270 -42 2 1207 198 0 0 0 chr1 81657062 81657084 -115538348 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1208 788 169 48 0 chr1 81659085 81659251 -115536181 - Lx LINE L1 -6 6648 6475 2 1208 8225 129 39 9 chr1 81659364 81660789 -115534643 + Lx2 LINE L1 5526 6997 0 2 1208 420 314 83 41 chr1 81660877 81661143 -115534289 + L1M5 LINE L1 5255 5531 -633 2 1208 238 310 53 43 chr1 81661187 81661396 -115534036 + L1M5 LINE L1 5624 5834 -345 2 1208 292 285 231 18 chr1 81661768 81662042 -115533390 - MLT1B LTR MaLR -26 348 17 2 1208 687 270 54 0 chr1 81663434 81663675 -115531757 + L1MA6 LINE L1 5645 5898 -402 2 1208 1879 134 42 7 chr1 81663698 81664005 -115531427 + ORR1A2 LTR MaLR 2 319 -8 2 1208 2066 118 15 58 chr1 81664161 81664503 -115530929 - ORR1A2 LTR MaLR 0 327 1 2 1208 321 281 0 12 chr1 81664575 81664658 -115530774 + GA-rich Low_complexity Low_complexity 3 84 0 2 1208 195 188 0 0 chr1 81665004 81665052 -115530380 + T-rich Low_complexity Low_complexity 1 48 0 2 1208 977 55 6 135 chr1 81665055 81665113 -115530319 - B1_Mus1 SINE Alu 0 148 91 2 1208 5381 26 2 0 chr1 81665113 81665736 -115529696 - L1Md_A LINE L1 0 6582 5959 2 1208 977 55 6 135 chr1 81665736 81665847 -115529585 - B1_Mus1 SINE Alu -58 90 1 2 1208 21 36 0 0 chr1 81666099 81666127 -115529305 + AT_rich Low_complexity Low_complexity 1 28 0 2 1208 745 303 62 23 chr1 81667062 81667319 -115528113 + B4A SINE B4 6 272 -20 2 1208 188 200 18 0 chr1 81667361 81667416 -115528016 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1208 1087 109 0 0 chr1 81668167 81668314 -115527118 - B1_Mus1 SINE Alu 0 148 2 2 1208 254 327 33 66 chr1 81668482 81668603 -115526829 - L2a LINE L2 -13 3413 3297 2 1208 1297 228 65 22 chr1 81670549 81670904 -115524528 - ORR1D1 LTR MaLR -2 372 3 2 1208 465 338 0 78 chr1 81670904 81671042 -115524390 + RSINE1 SINE B4 12 140 -25 2 1208 285 29 0 0 chr1 81671042 81671076 -115524356 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1208 465 338 0 78 chr1 81671076 81671104 -115524328 + RSINE1 SINE B4 141 165 0 2 1208 321 26 0 0 chr1 81671426 81671464 -115523968 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1208 924 33 0 0 chr1 81672605 81672725 -115522707 - L1_Mus1 LINE L1 0 6567 6448 2 1208 228 86 0 0 chr1 81673271 81673306 -115522126 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1208 489 291 26 42 chr1 81674040 81674230 -115521202 + B3A SINE B2 1 187 -11 2 1208 234 81 0 0 chr1 81675385 81675422 -115520010 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 2 1208 30968 105 33 19 chr1 81675454 81681027 -115514405 + Lx3_Mus LINE L1 39 5920 -1089 2 1208 234 0 0 0 chr1 81681027 81681053 -115514379 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1208 10067 82 18 22 chr1 81681053 81682139 -115513293 + Lx3_Mus LINE L1 5921 7009 0 2 1208 1254 77 0 0 chr1 81683205 81683375 -115512057 - L1_Mus1 LINE L1 -1 6566 6397 2 1208 22 35 0 0 chr1 81683492 81683521 -115511911 + AT_rich Low_complexity Low_complexity 1 29 0 2 1208 395 275 66 17 chr1 81683719 81683888 -115511544 + B3A SINE B2 3 181 -17 2 1208 419 52 17 0 chr1 81683888 81683946 -115511486 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2 1208 395 275 66 17 chr1 81683946 81683957 -115511475 + B3A SINE B2 182 192 -6 2 1208 232 147 59 0 chr1 81684711 81684779 -115510653 + (CAGAGA)n Simple_repeat Simple_repeat 3 74 0 2 1208 21 0 0 0 chr1 81684911 81684932 -115510500 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 738 292 5 11 chr1 81685189 81685376 -115510056 - B3A SINE B2 -8 190 5 2 1208 823 249 59 15 chr1 81685411 81685615 -115509817 - B3 SINE B2 -1 215 3 2 1208 431 329 0 21 chr1 81685757 81685900 -115509532 + LTR40a LTR ERVL 19 158 -361 2 1208 318 294 33 0 chr1 81686042 81686134 -115509298 + LTR40a LTR ERVL 425 519 0 2 1208 296 354 39 0 chr1 81686488 81686618 -115508814 - LTR79 LTR ERVL -95 432 298 2 1208 526 285 42 126 chr1 81687961 81688246 -115507186 + ORR1D1 LTR MaLR 8 268 -106 2 1208 1931 24 177 0 chr1 81688266 81688514 -115506918 - RLTR10B LTR ERVK 0 292 1 2 1208 1910 60 0 0 chr1 81688514 81688749 -115506683 - MMERVK10C-int LTR ERVK 0 7581 7347 2 1208 983 62 23 0 chr1 81688749 81688877 -115506555 - MMERVK10C-int LTR ERVK -2015 5566 5436 2 1208 336 43 106 0 chr1 81688863 81688910 -115506522 - MMERVK10C-int LTR ERVK -7305 276 225 2 1208 254 273 0 0 chr1 81688910 81688965 -115506467 - RLTR27 LTR ERVK -34 275 221 2 1208 1281 78 36 16 chr1 81688965 81689532 -115505900 - MMERVK10C-int LTR ERVK -7312 269 61 2 1208 253 264 0 0 chr1 81689532 81689585 -115505847 - RLTR27 LTR ERVK -34 275 223 2 1208 1402 52 0 0 chr1 81689585 81689757 -115505675 - MMERVK10C-int LTR ERVK -7409 172 1 2 1208 2132 27 114 0 chr1 81689757 81690019 -115505413 - RLTR10B LTR ERVK 0 292 1 2 1208 213 301 138 19 chr1 81690130 81690289 -115505143 + L2a LINE L2 3225 3402 -24 2 1208 389 194 16 16 chr1 81690980 81691086 -115504346 - ORR1C1 LTR MaLR -127 251 153 2 1208 217 164 55 0 chr1 81691572 81691627 -115503805 + A-rich Low_complexity Low_complexity 3 60 0 2 1208 225 328 62 0 chr1 81691816 81691880 -115503552 + B1F2 SINE Alu 5 72 -77 2 1208 180 152 0 0 chr1 81691892 81691925 -115503507 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1208 596 296 26 21 chr1 81692126 81692319 -115503113 - B3A SINE B2 -1 197 4 2 1208 377 285 77 16 chr1 81693567 81693734 -115501698 + MIR3 SINE MIR 17 187 -21 2 1208 270 0 0 0 chr1 81694264 81694294 -115501138 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 2 1208 424 318 132 74 chr1 81694480 81694788 -115500644 + MTD LTR MaLR 30 335 -44 2 1208 573 253 75 38 chr1 81694788 81694948 -115500484 + B3A SINE B2 51 216 0 2 1208 682 154 8 8 chr1 81696418 81696542 -115498890 - URR1B DNA MER1_type 0 225 102 2 1208 406 326 211 26 chr1 81696690 81697036 -115498396 - MLT1F2 LTR MaLR 0 560 151 2 1208 262 324 128 0 chr1 81697231 81697333 -115498099 + PB1 SINE Alu 1 115 -12 2 1208 21 0 0 0 chr1 81698175 81698196 -115497236 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 387 0 0 0 chr1 81698691 81698734 -115496698 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1208 190 308 187 28 chr1 81698989 81699096 -115496336 - L2b LINE L2 -16 3359 3236 2 1208 761 327 79 45 chr1 81699225 81699555 -115495877 + MER2 DNA MER2_type 2 342 -3 2 1208 231 267 233 0 chr1 81699594 81699684 -115495748 - MIR SINE MIR -9 253 143 2 1208 350 287 18 5 chr1 81699953 81700052 -115495380 + B1F SINE Alu 13 113 -34 2 1208 192 179 0 0 chr1 81700257 81700296 -115495136 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2 1208 419 308 70 0 chr1 81700486 81700629 -115494803 + RSINE1 SINE B4 3 155 -10 2 1208 21 0 0 0 chr1 81700629 81700650 -115494782 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 794 269 98 101 chr1 81701085 81701555 -115493877 + RMER2 LTR ERV1 1 540 -27 2 1208 1146 201 44 105 chr1 81701764 81702058 -115493374 + ORR1B2 LTR MaLR 1 276 -91 2 1208 207 0 0 0 chr1 81702065 81702088 -115493344 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1208 499 235 90 13 chr1 81703150 81703305 -115492127 + MLT1A0 LTR MaLR 1 167 -198 2 1208 21 0 0 0 chr1 81703497 81703518 -115491914 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 22 80 0 0 chr1 81703921 81703971 -115491461 + AT_rich Low_complexity Low_complexity 1 50 0 2 1208 407 313 42 21 chr1 81704450 81704734 -115490698 + L1M4 LINE L1 4759 5048 -1098 2 1208 23 0 0 0 chr1 81705263 81705286 -115490146 + AT_rich Low_complexity Low_complexity 1 23 0 2 1208 29 0 0 0 chr1 81705710 81705739 -115489693 + AT_rich Low_complexity Low_complexity 1 29 0 2 1208 4291 140 25 4 chr1 81705848 81706524 -115488908 - RLTR17 LTR ERVK 0 692 3 2 1208 2825 168 34 19 chr1 81706712 81707245 -115488187 + RLTR20A LTR ERVK 1 541 0 2 1208 2145 212 113 9 chr1 81707308 81707837 -115487595 + RLTR31A_Mm LTR ERVK 1 584 0 2 1208 330 45 0 0 chr1 81708171 81708215 -115487217 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 1208 1138 151 0 5 chr1 81708502 81708688 -115486744 - B2_Mm2 SINE B2 -2 193 9 2 1208 224 167 21 0 chr1 81708931 81708979 -115486453 + CT-rich Low_complexity Low_complexity 2 50 0 2 1208 451 112 12 12 chr1 81709100 81709181 -115486251 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1208 248 302 96 68 chr1 81709188 81709437 -115485995 - Lx8 LINE L1 -19 7454 7199 2 1208 430 333 30 0 chr1 81709471 81709606 -115485826 + RSINE1 SINE B4 3 141 -24 2 1208 1002 124 0 0 chr1 81709663 81709879 -115485553 + (TG)n Simple_repeat Simple_repeat 1 216 0 2 1208 1044 144 0 11 chr1 81709892 81710432 -115485000 + (TG)n Simple_repeat Simple_repeat 1 534 0 2 1208 482 287 76 36 chr1 81712846 81713070 -115482362 + Charlie4a DNA MER1_type 73 305 -203 2 1208 189 74 0 0 chr1 81713287 81713314 -115482118 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1208 428 302 95 0 chr1 81713424 81713550 -115481882 + B1F1 SINE Alu 5 142 -7 2 1208 21 0 0 0 chr1 81714462 81714483 -115480949 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 1041 238 168 122 chr1 81715740 81716157 -115479275 + MT2A LTR ERVL 19 454 -79 3 1208 1005 283 51 10 chr1 81716197 81716258 -115479174 + L1MA5A LINE L1 4562 4622 -1521 3 1208 243 0 0 0 chr1 81716258 81716285 -115479147 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1208 1005 284 51 15 chr1 81716285 81716630 -115478802 + L1MA5A LINE L1 4592 4969 -1174 3 1208 351 0 0 0 chr1 81716630 81716669 -115478763 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1208 1066 292 68 49 chr1 81716669 81717727 -115477705 + L1MA5A LINE L1 4954 5929 -371 3 1208 617 58 12 0 chr1 81717832 81717918 -115477514 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 3 1208 210 91 0 0 chr1 81717941 81717974 -115477458 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1208 185 0 40 0 chr1 81718579 81718604 -115476828 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1208 401 319 9 0 chr1 81719347 81719460 -115475972 + MTEb LTR MaLR 266 379 0 3 1208 936 86 0 0 chr1 81719560 81719700 -115475732 + (TGGA)n Simple_repeat Simple_repeat 1 140 0 3 1208 195 399 79 12 chr1 81720141 81720306 -115475126 + L2 LINE L2 2654 2829 -590 3 1208 219 36 0 0 chr1 81720597 81720625 -115474807 + (CAA)n Simple_repeat Simple_repeat 1 28 0 3 1208 24 53 0 0 chr1 81720639 81720677 -115474755 + AT_rich Low_complexity Low_complexity 1 38 0 3 1208 273 375 129 16 chr1 81720771 81721026 -115474406 - L2 LINE L2 -339 3080 2797 3 1208 573 366 32 0 chr1 81721385 81721694 -115473738 - L2 LINE L2 -2281 1138 820 3 1208 567 0 0 0 chr1 81721949 81722012 -115473420 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 3 1208 318 392 113 50 chr1 81722543 81722930 -115472502 - MLT1J2 LTR MaLR -2 446 36 3 1208 22 56 0 0 chr1 81724033 81724069 -115471363 + AT_rich Low_complexity Low_complexity 1 36 0 3 1208 2111 147 75 5 chr1 81724069 81724458 -115470974 - Lx2 LINE L1 -2 6995 6580 3 1208 1428 84 14 27 chr1 81724458 81724645 -115470787 + Lx2A1 LINE L1 5717 5905 -1103 3 1208 226 0 29 29 chr1 81724645 81724680 -115470752 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1208 1428 84 14 27 chr1 81724680 81724712 -115470720 + Lx2A1 LINE L1 5906 5933 -1075 3 1208 21 36 0 0 chr1 81724720 81724748 -115470684 + AT_rich Low_complexity Low_complexity 1 28 0 3 1208 234 0 0 0 chr1 81724854 81724880 -115470552 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1208 632 252 0 16 chr1 81725098 81725227 -115470205 - B1_Mur4 SINE Alu -18 132 6 3 1208 221 171 0 0 chr1 81726246 81726287 -115469145 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1208 31 26 0 0 chr1 81726479 81726517 -115468915 + AT_rich Low_complexity Low_complexity 1 38 0 3 1208 1284 247 97 21 chr1 81727001 81727340 -115468092 + MTD LTR MaLR 55 419 0 3 1208 421 110 24 0 chr1 81727598 81727680 -115467752 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 1208 383 196 32 13 chr1 81727743 81727898 -115467534 + (TA)n Simple_repeat Simple_repeat 1 158 0 3 1208 669 25 0 0 chr1 81729017 81729096 -115466336 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1208 234 22 64 43 chr1 81729302 81729349 -115466083 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 1208 404 233 23 11 chr1 81729408 81729495 -115465937 + B1_Mur1 SINE Alu 54 141 -8 3 1208 582 86 0 0 chr1 81729713 81729794 -115465638 + (CATA)n Simple_repeat Simple_repeat 1 81 0 3 1208 270 339 81 46 chr1 81730895 81731068 -115464364 + MER20 DNA MER1_type 40 218 -1 3 1208 181 403 69 15 chr1 81731387 81731591 -115463841 + L2 LINE L2 2868 3082 -337 3 1208 1781 204 65 42 chr1 81732159 81732593 -115462839 + RLTR41 LTR ERV1 1 444 -2 3 1208 499 322 0 0 chr1 81732600 81732715 -115462717 + RSINE1 SINE B4 50 164 -1 3 1208 260 91 23 0 chr1 81733127 81733171 -115462261 + (TATG)n Simple_repeat Simple_repeat 3 47 0 3 1208 1021 180 110 0 chr1 81734549 81734749 -115460683 + URR1A DNA MER1_type 5 226 0 3 1208 353 232 24 12 chr1 81735238 81735321 -115460111 + L3b LINE CR1 149 232 -250 3 1208 455 320 38 16 chr1 81736821 81737005 -115458427 + MIR SINE MIR 1 188 -74 3 1208 180 333 0 0 chr1 81737605 81737653 -115457779 - L2c LINE L2 -57 3330 3283 3 1208 1289 251 89 8 chr1 81737766 81738098 -115457334 - MTEa LTR MaLR -14 407 1 3 1208 402 21 0 0 chr1 81739769 81739816 -115455616 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1208 285 29 0 0 chr1 81739816 81739849 -115455583 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1208 207 0 0 0 chr1 81739849 81739871 -115455561 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1208 309 330 80 0 chr1 81739945 81740033 -115455399 - B1F SINE Alu -54 95 1 3 1208 186 189 0 0 chr1 81742658 81742695 -115452737 + GA-rich Low_complexity Low_complexity 2 38 0 3 1208 885 276 87 68 chr1 81742990 81743446 -115451986 + RLTR26 LTR ERVK 2 495 -147 3 1208 546 292 127 84 chr1 81746238 81746572 -115448860 - MTE2a LTR MaLR -12 367 15 3 1208 4266 40 38 0 chr1 81748254 81748828 -115446604 - L1Md_F3 LINE L1 0 6584 6026 3 1208 546 191 0 0 chr1 81748889 81749015 -115446417 + (TG)n Simple_repeat Simple_repeat 1 126 0 3 1208 412 301 56 50 chr1 81749021 81749182 -115446250 - RSINE1 SINE B4 0 165 4 3 1208 189 0 0 0 chr1 81749232 81749253 -115446179 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1208 307 312 154 14 chr1 81749265 81749408 -115446024 - RSINE1 SINE B4 -1 164 2 3 1208 1310 218 115 17 chr1 81749757 81750128 -115445304 + MTD LTR MaLR 7 405 -14 3 1208 290 275 50 8 chr1 81750213 81750334 -115445098 - L1M2 LINE L1 -791 5521 5396 3 1208 521 316 51 95 chr1 81750580 81750971 -115444461 - HAL1 LINE L1 -824 1683 1310 3 1208 299 319 56 28 chr1 81751118 81751402 -115444030 + L1M5 LINE L1 3984 4275 -1871 3 1208 630 65 0 0 chr1 81752258 81752350 -115443082 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 1208 213 39 0 0 chr1 81753919 81753945 -115441487 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1208 587 81 12 0 chr1 81753952 81754038 -115441394 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 3 1208 265 302 21 10 chr1 81754040 81754137 -115441295 - PB1D10 SINE Alu -14 103 6 3 1208 905 157 20 0 chr1 81754621 81754768 -115440664 - B1_Mur4 SINE Alu 0 150 1 3 1208 2300 156 21 5 chr1 81755701 81756076 -115439356 - ORR1B1 LTR MaLR -13 381 1 3 1208 2547 135 15 24 chr1 81757712 81758167 -115437265 + Lx4A LINE L1 787 1237 -5849 3 1208 335 132 0 0 chr1 81758167 81758220 -115437212 + B1_Mus2 SINE Alu 95 147 0 3 1208 427 90 19 106 chr1 81758220 81758381 -115437051 + A-rich Low_complexity Low_complexity 1 147 0 3 1208 7471 124 53 20 chr1 81758381 81759182 -115436250 + Lx4A LINE L1 1229 2044 -3833 3 1208 306 0 0 0 chr1 81759182 81759216 -115436216 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1208 7471 124 53 20 chr1 81759216 81759859 -115435573 + Lx4A LINE L1 2045 2719 -3158 3 1208 8100 143 24 13 chr1 81759843 81761509 -115433923 + Lx4A LINE L1 5383 7058 0 3 1208 486 0 0 0 chr1 81761735 81761789 -115433643 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1208 357 313 28 97 chr1 81761845 81761990 -115433442 - B4 SINE B4 -134 158 24 3 1208 612 37 104 6 chr1 81762647 81762810 -115432622 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 3 1208 1106 84 5 27 chr1 81762810 81762994 -115432438 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1208 299 336 62 28 chr1 81763141 81763285 -115432147 + MIR SINE MIR 26 174 -88 3 1208 279 0 0 0 chr1 81763354 81763385 -115432047 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 1208 280 350 19 17 chr1 81764497 81764627 -115430805 - MIRb SINE MIR -118 150 6 3 1208 1751 152 85 0 chr1 81764751 81765080 -115430352 - L1Md_F LINE L1 -5676 843 487 3 1208 7067 76 19 0 chr1 81765096 81766516 -115428916 + L1_Mus1 LINE L1 5121 6567 0 3 1208 236 330 21 32 chr1 81766531 81766625 -115428807 - L2a LINE L2 -12 3414 3322 3 1208 248 318 112 59 chr1 81768070 81768257 -115427175 + MIRb SINE MIR 46 242 -26 3 1208 450 0 0 0 chr1 81768840 81768890 -115426542 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 3 1208 432 358 25 38 chr1 81770780 81770937 -115424495 + RSINE1 SINE B4 11 165 0 3 1208 216 67 0 0 chr1 81772137 81772167 -115423265 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1208 228 262 123 32 chr1 81772758 81772912 -115422520 + L1ME3A LINE L1 4071 4238 -1908 3 1208 516 287 187 22 chr1 81772989 81773310 -115422122 - ORR1D1 LTR MaLR 0 374 1 3 1208 21 0 0 0 chr1 81773321 81773342 -115422090 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 392 288 107 15 chr1 81773355 81773616 -115421816 + L1ME3A LINE L1 4390 4674 -1472 3 1208 308 368 81 49 chr1 81773707 81773953 -115421479 + L1ME3A LINE L1 4826 5079 -1067 3 1208 443 340 61 15 chr1 81773955 81774152 -115421280 + MLT2F LTR ERVL 111 316 -347 3 1208 356 315 35 46 chr1 81774296 81774469 -115420963 + ERVL-E-int LTR ERVL 2280 2450 -3217 3 1208 315 293 35 0 chr1 81775138 81775254 -115420178 + (TA)n Simple_repeat Simple_repeat 2 121 0 3 1208 405 330 86 35 chr1 81775675 81775989 -115419443 + L1ME3A LINE L1 5579 5908 -265 3 1208 286 351 57 23 chr1 81776589 81776758 -115418674 + L2a LINE L2 3204 3422 -4 3 1208 2952 45 0 0 chr1 81777735 81778094 -115417338 - L1Md_F3 LINE L1 -15 6569 6211 3 1208 214 245 0 0 chr1 81778322 81778371 -115417061 + (CACCAT)n Simple_repeat Simple_repeat 2 50 0 3 1208 1587 187 95 48 chr1 81778457 81778878 -115416554 + RMER10A LTR ERVL 1 441 -1 3 1208 1200 80 6 13 chr1 81778907 81779222 -115416210 + (TTTC)n Simple_repeat Simple_repeat 1 312 0 3 1208 333 0 0 0 chr1 81779655 81779692 -115415740 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1208 2272 253 34 15 chr1 81779705 81780291 -115415141 - Lx8 LINE L1 -152 7321 6725 3 1208 303 28 0 0 chr1 81780401 81780437 -115414995 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1208 230 176 0 19 chr1 81780730 81780782 -115414650 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 3 1208 222 37 0 0 chr1 81780814 81780841 -115414591 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 3 1208 633 289 0 14 chr1 81780949 81781093 -115414339 - B3 SINE B2 -68 148 7 3 1208 1099 95 0 7 chr1 81782416 81782564 -115412868 + B1_Mus2 SINE Alu 1 147 0 3 1208 265 261 0 85 chr1 81783118 81783248 -115412184 - L1MEc LINE L1 -3994 2406 2288 4 1208 344 246 11 11 chr1 81783440 81783617 -115411815 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1208 669 263 70 10 chr1 81784235 81784435 -115410997 + B3 SINE B2 5 216 0 4 1208 909 160 202 0 chr1 81785430 81785618 -115409814 + URR1A DNA MER1_type 1 226 0 4 1208 1142 210 88 23 chr1 81785632 81785983 -115409449 + Lx9 LINE L1 7259 7632 -12 4 1208 1139 102 11 0 chr1 81785983 81786159 -115409273 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1208 1164 128 5 5 chr1 81787150 81787347 -115408085 - Lx LINE L1 -2 6652 6456 4 1208 409 247 60 11 chr1 81787355 81787543 -115407889 - L1M2 LINE L1 -774 5526 5332 4 1208 225 65 0 0 chr1 81788063 81788094 -115407338 + (TTA)n Simple_repeat Simple_repeat 2 32 0 4 1209 431 308 94 83 chr1 81788961 81789237 -115406195 + B4 SINE B4 3 281 -11 4 1209 2605 96 70 0 chr1 81789283 81789657 -115405775 - MTB LTR MaLR 0 400 1 4 1209 248 309 52 0 chr1 81789731 81789867 -115405565 + BC1_Mm scRNA scRNA 8 150 -2 4 1209 275 37 0 0 chr1 81790266 81790324 -115405108 + L1Md_F2 LINE L1 6524 6579 -5 4 1209 312 27 0 0 chr1 81790331 81790368 -115405064 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1209 2066 158 157 40 chr1 81790764 81791266 -115404166 + RLTR31_Mm LTR ERVK 1 561 0 4 1209 270 0 0 0 chr1 81792494 81792524 -115402908 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1209 220 317 0 46 chr1 81792562 81792714 -115402718 + CT-rich Low_complexity Low_complexity 2 146 0 4 1209 1195 54 0 0 chr1 81796548 81796695 -115398737 + B1_Mm SINE Alu 1 147 0 4 1209 21 36 0 0 chr1 81797103 81797131 -115398301 + AT_rich Low_complexity Low_complexity 1 28 0 4 1209 31740 81 5 10 chr1 81798051 81802937 -115392495 - L1Md_F2 LINE L1 -11 6571 1718 4 1209 1064 82 7 14 chr1 81802937 81803085 -115392347 - B1_Mm SINE Alu 0 147 1 4 1209 31740 100 41 5 chr1 81803085 81804358 -115391074 - L1Md_F2 LINE L1 -4166 1717 392 4 1209 2416 100 3 8 chr1 81804950 81805302 -115390130 + L1_Mus3 LINE L1 6286 6635 -3 4 1209 1052 138 0 16 chr1 81807377 81807568 -115387864 - L1_Mus4 LINE L1 -4 6632 6445 4 1209 380 328 8 0 chr1 81807583 81807705 -115387727 + PB1 SINE Alu 5 127 0 4 1209 258 333 48 18 chr1 81807727 81807892 -115387540 + L2a LINE L2 3207 3376 -50 4 1209 423 0 0 0 chr1 81807980 81808027 -115387405 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1209 335 307 0 0 chr1 81809619 81809694 -115385738 - B1F SINE Alu -38 111 37 4 1209 2074 90 0 16 chr1 81809750 81810032 -115385400 + L1_Mm LINE L1 5306 5587 -296 4 1209 8595 26 0 0 chr1 81810032 81811027 -115384405 + L1Md_A LINE L1 5588 6582 0 4 1209 2074 90 0 16 chr1 81811027 81811049 -115384383 + L1_Mm LINE L1 5588 5605 -278 4 1209 1028 75 0 0 chr1 81811635 81811782 -115383650 - L1Md_F2 LINE L1 0 6582 6436 4 1209 1620 126 10 67 chr1 81811787 81812086 -115383346 - Lx LINE L1 0 6654 6373 4 1209 361 356 92 75 chr1 81812502 81812927 -115382505 + MLT1C LTR MaLR 3 434 -33 4 1209 27 73 0 0 chr1 81813617 81813672 -115381760 + AT_rich Low_complexity Low_complexity 1 55 0 4 1209 2066 118 18 48 chr1 81814043 81814380 -115381052 + ORR1A2 LTR MaLR 1 327 0 4 1209 1301 271 12 40 chr1 81814466 81814793 -115380639 - MTE2a LTR MaLR -10 369 52 4 1209 594 330 32 58 chr1 81816123 81816313 -115379119 + B4A SINE B4 34 218 -74 4 1209 968 146 296 0 chr1 81816326 81816573 -115378859 + Lx9 LINE L1 7315 7634 -10 4 1209 189 0 0 0 chr1 81816575 81816596 -115378836 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1209 512 316 9 28 chr1 81816640 81816855 -115378577 + B3 SINE B2 3 213 -3 4 1209 330 307 0 106 chr1 81816855 81816878 -115378554 + MT2B LTR ERVL 138 145 -456 4 1209 781 177 8 19 chr1 81816878 81817038 -115378394 + B1_Mus1 SINE Alu 1 150 0 4 1209 182 37 37 0 chr1 81817041 81817068 -115378364 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1209 318 26 0 0 chr1 81817172 81817211 -115378221 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1209 6571 52 0 0 chr1 81817631 81818486 -115376946 + L1Md_F3 LINE L1 4730 5584 -299 4 1209 8162 39 2 1 chr1 81818489 81819483 -115375949 + L1Md_F3 LINE L1 5588 6582 -2 4 1209 293 319 7 15 chr1 81819714 81819851 -115375581 - MamRep4096 DNA hAT? -248 178 43 4 1209 7694 75 1 5 chr1 81820151 81821910 -115373522 + L1_Mus1 LINE L1 4812 6567 0 4 1209 681 338 57 63 chr1 81822049 81822542 -115372890 + Lx8 LINE L1 6809 7298 -175 4 1209 1555 224 76 9 chr1 81823763 81824105 -115371327 - ORR1D2 LTR MaLR 0 370 6 4 1209 630 0 0 0 chr1 81824477 81824547 -115370885 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1209 203 122 49 0 chr1 81824622 81824663 -115370769 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 1209 198 103 0 0 chr1 81824761 81824790 -115370642 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4 1209 29340 89 19 34 chr1 81824924 81829405 -115366027 - L1_Mus1 LINE L1 -1 6566 2076 4 1209 579 97 12 12 chr1 81829405 81829516 -115365916 - B1_Mur4 SINE Alu 0 150 39 4 1209 29340 89 19 34 chr1 81829516 81830562 -115364870 - L1_Mus1 LINE L1 -1 2075 1026 4 1209 2999 61 27 0 chr1 81830562 81830937 -115364495 - IAPEY_LTR LTR ERVK 0 385 1 4 1209 8315 68 3 11 chr1 81830937 81831750 -115363682 - L1_Mus1 LINE L1 -5613 1025 217 4 1209 915 44 7 35 chr1 81831781 81831923 -115363509 + L1Md_F2 LINE L1 6445 6582 0 4 1209 282 190 17 0 chr1 81833095 81833153 -115362279 + L1MDa LINE L1 2120 2178 -4455 4 1209 526 309 84 71 chr1 81833298 81833594 -115361838 - MLT1A0 LTR MaLR -2 363 64 4 1209 239 350 29 129 chr1 81833803 81834013 -115361419 + MLT1B LTR MaLR 196 384 -6 4 1209 315 284 42 10 chr1 81834393 81834436 -115360996 + MER3 DNA MER1_type 6 51 -158 4 1209 449 325 44 0 chr1 81834436 81834596 -115360836 - MER3 DNA MER1_type -1 208 42 4 1209 492 48 0 0 chr1 81834840 81834903 -115360529 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1209 337 341 117 45 chr1 81834948 81835212 -115360220 - B4A SINE B4 0 292 10 4 1209 587 328 86 109 chr1 81835213 81835716 -115359716 + MLT1E2 LTR MaLR 71 561 -66 4 1209 1300 111 16 0 chr1 81835815 81836004 -115359428 + B2_Mm2 SINE B2 2 193 -2 4 1209 330 200 11 11 chr1 81836019 81836110 -115359322 + Lx9 LINE L1 7553 7643 -1 4 1209 216 0 0 0 chr1 81837652 81837676 -115357756 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1209 512 188 39 15 chr1 81837838 81837968 -115357464 + Lx2B LINE L1 6868 7000 0 4 1209 825 164 18 0 chr1 81837996 81838161 -115357271 - Lx LINE L1 0 6654 6487 4 1209 1505 256 52 3 chr1 81839430 81839774 -115355658 - MTD LTR MaLR 0 419 59 4 1209 222 37 0 0 chr1 81841270 81841297 -115354135 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1209 331 284 12 0 chr1 81841305 81841386 -115354046 - B1F SINE Alu -8 141 60 4 1209 302 330 0 10 chr1 81842212 81842313 -115353119 + MER20 DNA MER1_type 12 111 -108 4 1209 1337 188 124 1 chr1 81842367 81842676 -115352756 + Lx5 LINE L1 6696 7055 -3 4 1209 1155 68 0 0 chr1 81843007 81843154 -115352278 + B1_Mus1 SINE Alu 2 148 0 4 1209 248 102 20 0 chr1 81843154 81843203 -115352229 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 4 1209 259 220 65 11 chr1 81844416 81844508 -115350924 + Lx9 LINE L1 7547 7643 -1 4 1209 425 237 79 0 chr1 81844514 81844628 -115350804 - RMER15-int LTR ERVL -260 4739 4617 4 1209 671 316 40 0 chr1 81844650 81844878 -115350554 - RMER15-int LTR ERVL -444 4555 4319 4 1209 1003 82 15 0 chr1 81845650 81845785 -115349647 + B1_Mus1 SINE Alu 2 138 -10 4 1209 270 0 0 0 chr1 81845799 81845829 -115349603 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1209 435 274 131 16 chr1 81845838 81846083 -115349349 + L1MB2 LINE L1 5010 5282 -858 4 1209 675 329 35 6 chr1 81846154 81846500 -115348932 + L1MB2 LINE L1 5768 6123 -48 4 1209 257 162 206 0 chr1 81846721 81846789 -115348643 - Lx8 LINE L1 -5 7468 7387 4 1209 1108 305 16 21 chr1 81848112 81848500 -115346932 + Lx7 LINE L1 6922 7307 -389 4 1209 261 183 0 0 chr1 81848509 81848569 -115346863 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1209 38 22 0 0 chr1 81848724 81848769 -115346663 + AT_rich Low_complexity Low_complexity 1 45 0 4 1209 996 307 26 15 chr1 81849112 81849383 -115346049 - B4A SINE B4 -10 282 9 4 1209 570 255 23 24 chr1 81849618 81849758 -115345674 + ID_B1 SINE B4 82 222 -70 4 1209 531 0 0 0 chr1 81849758 81849817 -115345615 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 4 1209 675 0 0 0 chr1 81849817 81849891 -115345541 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 4 1209 231 309 59 123 chr1 81849891 81849919 -115345513 + B4A SINE B4 223 243 -49 4 1209 216 0 0 0 chr1 81850211 81850235 -115345197 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1209 230 293 122 43 chr1 81851296 81851435 -115343997 - B4 SINE B4 -87 205 56 4 1209 2641 172 89 21 chr1 81852085 81852612 -115342820 - RMER19B LTR ERVK 0 902 340 4 1209 866 169 77 201 chr1 81852634 81852893 -115342539 - RMER19B LTR ERVK -675 227 1 4 1209 193 279 91 23 chr1 81853294 81853382 -115342050 + L2b LINE L2 3282 3375 0 4 1209 337 97 16 31 chr1 81853428 81853492 -115341940 + (TCC)n Simple_repeat Simple_repeat 1 63 0 4 1209 620 256 82 43 chr1 81853784 81853992 -115341440 + B3 SINE B2 1 216 0 4 1209 193 318 163 22 chr1 81855392 81855527 -115339905 - L2c LINE L2 -70 3317 3164 4 1209 260 229 44 44 chr1 81855822 81855936 -115339496 - Lx9 LINE L1 -130 7514 7401 4 1209 329 77 26 80 chr1 81858385 81858498 -115336934 + T-rich Low_complexity Low_complexity 2 108 0 4 1209 576 156 205 0 chr1 81858498 81858620 -115336812 - B1_Mus1 SINE Alu 0 148 2 4 1209 3141 77 11 7 chr1 81858639 81859073 -115336359 + L1Md_F2 LINE L1 6133 6568 -14 4 1209 305 325 81 11 chr1 81859188 81859362 -115336070 + L1MD3 LINE L1 7778 7963 -32 4 1209 22 0 0 0 chr1 81859425 81859447 -115335985 + AT_rich Low_complexity Low_complexity 1 22 0 5 1209 4395 161 56 18 chr1 81859453 81860254 -115335178 - Lx5 LINE L1 -151 6899 6068 5 1209 204 162 61 24 chr1 81860764 81860846 -115334586 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 1209 8453 124 60 16 chr1 81861943 81863523 -115331909 + Lx2 LINE L1 5360 6993 -4 5 1209 286 415 0 0 chr1 81863565 81863717 -115331715 + Lx8 LINE L1 7055 7206 -267 5 1209 768 114 0 0 chr1 81864186 81864309 -115331123 + L1_Mus1 LINE L1 6444 6566 -1 5 1209 1007 94 21 15 chr1 81864790 81864986 -115330446 - RLTR45 LTR ERVK -117 365 213 5 1209 244 344 12 34 chr1 81865373 81865525 -115329907 - L1MD3 LINE L1 -944 6841 6691 5 1209 236 314 23 28 chr1 81865942 81866119 -115329313 - L1MA4 LINE L1 -69 6231 6056 5 1209 441 0 0 0 chr1 81866534 81866583 -115328849 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1209 243 61 0 0 chr1 81866759 81866792 -115328640 + (TGG)n Simple_repeat Simple_repeat 1 33 0 5 1209 374 293 80 28 chr1 81867096 81867345 -115328087 + L1MC3 LINE L1 6880 7141 -644 5 1209 2525 85 14 6 chr1 81867365 81867720 -115327712 - L1_Mus1 LINE L1 0 6567 6210 5 1209 2183 49 0 0 chr1 81869475 81869742 -115325690 + L1Md_T LINE L1 6316 6582 0 5 1209 787 288 124 4 chr1 81869917 81870151 -115325281 + B4A SINE B4 9 270 -22 5 1209 24612 81 18 5 chr1 81873460 81876940 -115318492 - L1MA4 LINE L1 -371 5929 2376 5 1209 8025 48 1 2 chr1 81876945 81877929 -115317503 + L1Md_F2 LINE L1 5588 6570 -12 5 1209 406 220 77 55 chr1 81878202 81878385 -115317047 - Lx9 LINE L1 0 7644 7458 5 1209 271 387 15 20 chr1 81878984 81879187 -115316245 + L4 LINE RTE 1624 1825 -204 5 1209 1637 55 18 0 chr1 81879325 81879544 -115315888 + L1Md_F2 LINE L1 6360 6582 0 5 1209 504 304 20 26 chr1 81879665 81879817 -115315615 - RSINE1 SINE B4 -10 155 5 5 1209 654 126 0 0 chr1 81879975 81880078 -115315354 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 5 1209 233 367 39 11 chr1 81880132 81880314 -115315118 + MIR SINE MIR 69 255 -7 5 1209 967 304 50 28 chr1 81880450 81881109 -115314323 + L1MB1 LINE L1 5178 5793 -396 5 1209 231 88 0 0 chr1 81881109 81881143 -115314289 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1209 819 312 58 111 chr1 81881143 81881397 -115314035 + L1MB1 LINE L1 5794 6053 -136 5 1209 256 322 30 118 chr1 81881430 81881599 -115313833 + L1M6 LINE L1 655 808 -5779 5 1209 1202 280 131 13 chr1 81881875 81882142 -115313290 + Lx8 LINE L1 6924 7215 -258 5 1209 531 31 0 0 chr1 81882142 81882207 -115313225 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 1209 1202 280 131 13 chr1 81882207 81882405 -115313027 + Lx8 LINE L1 7216 7443 -30 5 1209 281 246 18 0 chr1 81882493 81882550 -115312882 + ID SINE ID 8 65 -159 5 1209 303 266 215 7 chr1 81883839 81883983 -115311449 + MER47B DNA MER2_type 119 292 -126 5 1209 530 155 9 0 chr1 81884057 81884173 -115311259 + (TA)n Simple_repeat Simple_repeat 2 118 0 5 1209 212 373 51 51 chr1 81884239 81884454 -115310978 - MIRb SINE MIR -52 216 2 5 1209 472 329 50 44 chr1 81885748 81886155 -115309277 + MLT2B2 LTR ERVL 8 513 -41 5 1209 252 0 0 0 chr1 81886155 81886183 -115309249 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1209 241 368 42 51 chr1 81886183 81886208 -115309224 + MLT2B2 LTR ERVL 514 541 -13 5 1209 362 255 86 51 chr1 81886218 81886474 -115308958 + L1M6 LINE L1 1530 1794 -4702 5 1209 385 344 127 0 chr1 81886559 81886748 -115308684 - MLT1B LTR MaLR 0 390 178 5 1209 551 215 68 73 chr1 81886751 81886942 -115308490 - L1MA10 LINE L1 -3 6331 6142 5 1209 361 327 30 42 chr1 81886944 81887110 -115308322 - MLT1B LTR MaLR -213 177 14 5 1209 723 291 55 63 chr1 81887740 81888106 -115307326 + MLT1B LTR MaLR 28 390 0 5 1209 273 334 125 89 chr1 81888362 81888723 -115306709 - LTR16B1 LTR ERVL -103 377 4 5 1209 205 70 0 65 chr1 81889040 81889086 -115306346 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1209 519 309 79 20 chr1 81890065 81890217 -115305215 + MTE2b LTR MaLR 1 161 -218 5 1209 502 61 0 0 chr1 81890220 81890286 -115305146 - ORR1A3 LTR MaLR 0 326 261 5 1209 882 175 37 144 chr1 81890304 81890658 -115304774 + RLTRETN_Mm LTR ERVK 7 322 0 5 1209 1249 84 93 207 chr1 81890658 81890958 -115304474 - ORR1A2 LTR MaLR -61 266 1 5 1209 506 286 154 89 chr1 81890958 81891147 -115304285 + MTE2b LTR MaLR 167 371 -8 5 1209 244 378 0 12 chr1 81892213 81892296 -115303136 - ID2 SINE ID 0 83 2 5 1209 303 268 85 0 chr1 81892497 81892579 -115302853 + B1_Mur1 SINE Alu 60 148 -1 5 1209 228 100 0 0 chr1 81892681 81892721 -115302711 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1209 282 273 0 83 chr1 81892721 81892793 -115302639 + B4A SINE B4 222 287 -5 5 1209 469 149 0 0 chr1 81893078 81893145 -115302287 - B1_Mur1 SINE Alu -23 126 60 5 1209 598 310 66 26 chr1 81894308 81894649 -115300783 + ORR1E LTR MaLR 3 379 0 5 1209 216 0 0 0 chr1 81895902 81895926 -115299506 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1209 632 46 0 44 chr1 81896040 81896052 -115299380 - B1_Mus2 SINE Alu 0 147 139 5 1209 717 23 0 0 chr1 81896052 81896139 -115299293 + (GTTTG)n Simple_repeat Simple_repeat 2 88 0 5 1209 632 64 1 43 chr1 81896139 81896230 -115299202 - B1_Mus2 SINE Alu -9 140 49 5 1209 23 0 0 0 chr1 81896538 81896561 -115298871 + AT_rich Low_complexity Low_complexity 1 23 0 5 1209 296 330 0 19 chr1 81896593 81896698 -115298734 + GA-rich Low_complexity Low_complexity 4 106 0 5 1209 306 314 102 40 chr1 81896698 81896874 -115298558 + HAL1-3A_ME LINE L1 2019 2205 -653 5 1209 204 182 0 0 chr1 81896887 81896931 -115298501 + G-rich Low_complexity Low_complexity 4 47 0 5 1209 3622 146 37 46 chr1 81897134 81897781 -115297651 + RLTR26 LTR ERVK 1 641 -1 5 1209 1000 157 29 39 chr1 81899768 81899973 -115295459 + Lx LINE L1 6451 6653 -1 5 1209 597 168 29 0 chr1 81899974 81900067 -115295365 + polypurine Low_complexity Low_complexity 1 97 0 5 1209 1077 11 0 83 chr1 81900067 81900259 -115295173 + (GGAAA)n Simple_repeat Simple_repeat 5 180 0 5 1209 597 168 29 0 chr1 81900259 81900302 -115295130 + polypurine Low_complexity Low_complexity 98 140 0 5 1209 530 336 60 5 chr1 81900575 81900793 -115294639 + MIR SINE MIR 28 257 -5 5 1209 180 125 0 0 chr1 81901132 81901164 -115294268 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1209 891 284 143 46 chr1 81902024 81902592 -115292840 - Lx8 LINE L1 -1 7472 6850 5 1209 313 306 34 0 chr1 81902654 81902801 -115292631 - L1MA6 LINE L1 -24 6276 6125 5 1209 3413 65 0 2 chr1 81902821 81903253 -115292179 - L1_Mus1 LINE L1 -2 6565 6135 5 1209 301 26 0 0 chr1 81903253 81903291 -115292141 + L1_Mus1 LINE L1 6075 6112 -455 5 1209 344 254 137 21 chr1 81903296 81903537 -115291895 - L1MA6 LINE L1 -167 6133 5865 5 1209 1066 294 55 35 chr1 81903540 81903907 -115291525 + MTEa LTR MaLR 6 379 0 5 1209 477 0 0 0 chr1 81904292 81904345 -115291087 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1209 234 0 0 0 chr1 81904345 81904370 -115291062 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1209 675 271 78 22 chr1 81904470 81904700 -115290732 + RLTR11A2 LTR ERVK 1 243 -284 5 1209 1074 98 11 11 chr1 81904701 81904877 -115290555 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 5 1209 521 328 117 53 chr1 81907368 81907728 -115287704 - MLT1B LTR MaLR 0 390 8 5 1209 458 348 82 27 chr1 81908101 81908429 -115287003 + MLT1B LTR MaLR 1 346 -44 5 1209 259 406 49 18 chr1 81908486 81908649 -115286783 - MLT1E3 LTR MaLR -281 343 176 5 1209 244 292 102 19 chr1 81908663 81908771 -115286661 - MLT1E3 LTR MaLR -507 117 1 5 1209 1786 122 193 0 chr1 81908976 81909297 -115286135 - RLTR9A2 LTR ERVK 0 383 1 5 1209 535 276 14 29 chr1 81909790 81909928 -115285504 - B1F2 SINE Alu -8 141 6 5 1209 189 74 0 0 chr1 81910617 81910644 -115284788 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1209 4985 199 32 17 chr1 81910759 81911776 -115283656 - Lx5 LINE L1 0 7050 6018 5 1209 1050 122 0 0 chr1 81912791 81912938 -115282494 - B1_Mus1 SINE Alu 0 148 2 5 1209 238 143 62 31 chr1 81914420 81914485 -115280947 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 5 1209 263 211 135 39 chr1 81914539 81914633 -115280799 + MTE2b LTR MaLR 228 313 -66 5 1209 195 42 0 0 chr1 81914635 81914659 -115280773 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1209 239 229 56 14 chr1 81914659 81914730 -115280702 + MTE2b LTR MaLR 304 377 -2 5 1209 3696 60 4 2 chr1 81915958 81916455 -115278977 - L1_Mus1 LINE L1 -465 6102 5605 5 1209 275 0 0 28 chr1 81916600 81916636 -115278796 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1209 27 92 0 0 chr1 81917667 81917743 -115277689 + AT_rich Low_complexity Low_complexity 1 76 0 5 1209 458 320 10 37 chr1 81917836 81918095 -115277337 - Lx9 LINE L1 -312 7332 7008 5 1209 2712 169 28 10 chr1 81918159 81918655 -115276777 - RLTR16 LTR ERVK 0 505 1 5 1209 334 224 173 6 chr1 81918655 81918817 -115276615 + Lx9 LINE L1 7392 7580 -64 5 1209 297 0 0 0 chr1 81919282 81919315 -115276117 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1209 275 122 31 72 chr1 81919445 81919542 -115275890 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 1210 9033 4 0 0 chr1 81920138 81921134 -115274298 + L1Md_A LINE L1 5587 6582 0 5 1210 1299 50 0 16 chr1 81922571 81922754 -115272678 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1210 1144 282 26 75 chr1 81923947 81924296 -115271136 - ORR1E LTR MaLR -2 357 26 5 1210 581 348 142 19 chr1 81924324 81924804 -115270628 + L2 LINE L2 1913 2451 -968 5 1210 280 236 0 0 chr1 81925316 81925371 -115270061 + B3A SINE B2 2 56 -142 5 1210 1170 54 0 13 chr1 81925376 81925526 -115269906 + B1_Mus1 SINE Alu 1 148 0 5 1210 258 57 57 0 chr1 81925526 81925579 -115269853 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 5 1210 408 258 113 0 chr1 81925580 81925677 -115269755 + B3A SINE B2 47 154 -44 5 1210 486 83 0 0 chr1 81925686 81925758 -115269674 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1210 494 135 22 0 chr1 81925758 81925847 -115269585 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 5 1210 335 317 17 29 chr1 81926112 81926284 -115269148 - L2a LINE L2 -1 3425 3256 6 1210 23 0 0 0 chr1 81927682 81927705 -115267727 + AT_rich Low_complexity Low_complexity 1 23 0 6 1210 512 303 139 52 chr1 81927865 81928116 -115267316 - B4A SINE B4 -17 275 3 6 1210 398 292 89 14 chr1 81928136 81928282 -115267150 - MLT1J1 LTR MaLR -243 201 45 6 1210 864 186 9 34 chr1 81928303 81928496 -115266936 - ORR1A4 LTR MaLR 0 421 208 6 1210 32 81 0 0 chr1 81929289 81929363 -115266069 + AT_rich Low_complexity Low_complexity 1 74 0 6 1210 536 135 0 9 chr1 81930346 81930458 -115264974 + (TGAG)n Simple_repeat Simple_repeat 4 114 0 6 1210 580 290 14 81 chr1 81931690 81931900 -115263532 + B3A SINE B2 3 198 0 6 1210 7258 45 15 1 chr1 81931926 81933150 -115262282 - L1Md_F2 LINE L1 -2 6580 5331 6 1210 12945 48 2 0 chr1 81933150 81934845 -115260587 + L1Md_F2 LINE L1 3644 5342 -541 6 1210 328 352 130 0 chr1 81935835 81935943 -115259489 + RSINE1 SINE B4 3 124 -41 6 1210 324 358 45 27 chr1 81936218 81936439 -115258993 + RMER15 LTR ERVL 344 568 -7 6 1210 669 243 124 0 chr1 81937563 81937740 -115257692 - B3 SINE B2 0 216 18 6 1210 622 260 25 31 chr1 81938097 81938256 -115257176 - B4A SINE B4 -10 282 125 6 1210 450 0 0 0 chr1 81938266 81938316 -115257116 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1210 247 255 53 175 chr1 81939614 81939650 -115255782 - MLT2B4 LTR ERVL -8 709 674 6 1210 465 19 0 0 chr1 81939650 81939704 -115255728 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 6 1210 723 269 107 93 chr1 81939704 81940160 -115255272 - MLT2B4 LTR ERVL -44 673 163 6 1210 403 82 14 14 chr1 81941149 81941223 -115254209 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 6 1210 330 293 104 8 chr1 81942499 81942633 -115252799 + MLT1A1 LTR MaLR 6 152 -256 6 1210 917 304 57 49 chr1 81942658 81943480 -115251952 - Lx7 LINE L1 -321 5559 4731 6 1210 561 263 7 28 chr1 81943463 81943653 -115251779 + Lx7 LINE L1 5591 5809 -494 6 1210 301 302 0 0 chr1 81943846 81943909 -115251523 + RSINE1 SINE B4 90 152 -13 6 1210 383 299 157 37 chr1 81944008 81944199 -115251233 + MLT1A1 LTR MaLR 177 390 -18 6 1210 606 297 38 13 chr1 81944200 81944439 -115250993 - Lx8 LINE L1 -978 6495 6251 6 1210 755 306 22 11 chr1 81944502 81944773 -115250659 + Lx8 LINE L1 6725 6998 -475 6 1210 614 336 31 17 chr1 81944806 81945094 -115250338 + Lx8 LINE L1 7082 7373 -100 6 1210 300 296 0 12 chr1 81945279 81945361 -115250071 + MLT1A1 LTR MaLR 316 396 -12 6 1210 385 338 60 42 chr1 81946960 81947340 -115248092 - HERV16-int LTR ERVL -2130 2866 2480 6 1210 215 325 39 13 chr1 81947430 81947508 -115247924 + MIRm SINE MIR 101 180 -96 6 1210 25 0 0 0 chr1 81947828 81947853 -115247579 + AT_rich Low_complexity Low_complexity 1 25 0 6 1210 204 296 24 36 chr1 81947998 81948082 -115247350 + MIRb SINE MIR 172 254 -14 6 1210 693 115 8 30 chr1 81949112 81949246 -115246186 + GA-rich Low_complexity Low_complexity 3 133 0 6 1210 383 258 128 6 chr1 81950186 81950350 -115245082 + MER53 DNA hAT 7 190 -3 6 1210 719 315 82 26 chr1 81951146 81951488 -115243944 + Charlie20a DNA Charlie 440 800 -7 6 1210 504 237 0 26 chr1 81951613 81951730 -115243702 + B1F1 SINE Alu 35 148 -1 6 1210 22 35 0 0 chr1 81951737 81951766 -115243666 + AT_rich Low_complexity Low_complexity 1 29 0 6 1210 249 318 6 68 chr1 81951815 81951977 -115243455 - Charlie22a DNA MER1_type -247 244 93 6 1210 383 113 14 0 chr1 81952145 81952216 -115243216 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1210 264 59 0 0 chr1 81952216 81952250 -115243182 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1210 733 297 115 20 chr1 81952328 81952572 -115242860 + B4A SINE B4 1 267 -25 6 1210 297 0 0 0 chr1 81952573 81952606 -115242826 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1210 378 0 0 0 chr1 81952606 81952647 -115242785 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1210 304 296 121 27 chr1 81952668 81952817 -115242615 - MER5A1 DNA MER1_type -1 165 3 6 1210 369 0 0 0 chr1 81953438 81953479 -115241953 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1210 279 0 0 0 chr1 81953647 81953678 -115241754 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1210 252 0 0 0 chr1 81953933 81953961 -115241471 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1210 276 30 0 0 chr1 81953961 81953993 -115241439 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1210 2115 54 7 14 chr1 81954579 81954862 -115240570 + L1_Mus3 LINE L1 6353 6633 -5 6 1210 272 228 89 0 chr1 81955539 81955618 -115239814 + Charlie10 DNA MER1_type 2711 2796 -26 6 1210 387 0 0 0 chr1 81955618 81955661 -115239771 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1210 1249 170 9 22 chr1 81955698 81955927 -115239505 - URR1A DNA MER1_type 0 226 1 6 1210 1166 62 0 7 chr1 81955996 81956143 -115239289 + B1_Mus2 SINE Alu 1 146 -1 6 1210 214 333 97 0 chr1 81956906 81956978 -115238454 + ID4 SINE ID 4 82 -1 6 1210 697 312 39 88 chr1 81957026 81957332 -115238100 + B4A SINE B4 2 292 0 6 1210 652 24 0 0 chr1 81957649 81957733 -115237699 - L1Md_T LINE L1 0 6582 6499 6 1210 225 65 0 0 chr1 81958438 81958469 -115236963 + (TCC)n Simple_repeat Simple_repeat 2 32 0 6 1210 210 71 0 0 chr1 81959427 81959455 -115235977 + (TTA)n Simple_repeat Simple_repeat 1 28 0 6 1210 626 72 10 0 chr1 81959943 81960040 -115235392 + (TC)n Simple_repeat Simple_repeat 2 99 0 6 1210 301 266 9 0 chr1 81960055 81960164 -115235268 + CT-rich Low_complexity Low_complexity 1 110 0 6 1210 253 62 20 20 chr1 81961852 81961901 -115233531 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1210 526 303 103 23 chr1 81961922 81962223 -115233209 + MLT1D LTR MaLR 181 505 0 6 1210 482 173 0 9 chr1 81962481 81962586 -115232846 + CT-rich Low_complexity Low_complexity 2 105 0 6 1210 596 200 75 67 chr1 81962589 81962749 -115232683 - B1_Mur1 SINE Alu 0 149 3 6 1210 666 130 0 0 chr1 81963121 81963229 -115232203 + (TG)n Simple_repeat Simple_repeat 1 108 0 6 1210 838 81 0 53 chr1 81963370 81963501 -115231931 + L1_Mus1 LINE L1 6271 6394 -173 6 1210 276 30 0 0 chr1 81963591 81963624 -115231808 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1210 29 47 0 0 chr1 81963637 81963680 -115231752 + AT_rich Low_complexity Low_complexity 1 43 0 6 1210 1135 102 6 6 chr1 81965466 81965644 -115229788 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1210 305 64 43 0 chr1 81965657 81965704 -115229728 + (TTCCC)n Simple_repeat Simple_repeat 1 49 0 6 1210 225 175 0 24 chr1 81965709 81965750 -115229682 + CT-rich Low_complexity Low_complexity 2 41 0 6 1210 227 244 111 17 chr1 81965767 81965884 -115229548 + Lx9 LINE L1 7492 7619 -25 6 1210 2975 217 62 72 chr1 81965921 81966187 -115229245 - Lx6 LINE L1 0 7460 7171 6 1210 432 0 0 0 chr1 81966187 81966235 -115229197 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1210 2975 217 62 72 chr1 81966235 81966826 -115228606 - Lx6 LINE L1 -290 7170 6612 6 1210 285 56 0 0 chr1 81967264 81967300 -115228132 + U2 snRNA snRNA 1 36 -152 6 1210 400 307 24 0 chr1 81967542 81967669 -115227763 + LTR16A LTR ERVL 281 410 -41 6 1210 180 0 0 0 chr1 81967860 81967880 -115227552 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1210 222 37 0 0 chr1 81967907 81967934 -115227498 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1210 246 218 0 82 chr1 81967973 81968083 -115227349 - Lx2B LINE L1 -1 6999 6899 6 1210 1480 241 72 32 chr1 81968381 81968784 -115226648 - MTD LTR MaLR 0 419 1 6 1210 1060 301 73 78 chr1 81968895 81969458 -115225974 - MLT1F2 LTR MaLR 0 560 1 6 1210 507 317 105 83 chr1 81969459 81969630 -115225802 + ORR1E LTR MaLR 1 175 -184 6 1210 381 22 0 0 chr1 81969630 81969676 -115225756 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1210 507 317 105 83 chr1 81969676 81969855 -115225577 + ORR1E LTR MaLR 176 358 -1 6 1210 251 296 21 31 chr1 81971498 81971690 -115223742 + RMER17A2 LTR ERVK 239 428 -478 6 1210 243 0 0 0 chr1 81971690 81971717 -115223715 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1210 261 0 0 0 chr1 81974069 81974098 -115221334 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1210 195 346 0 0 chr1 81974322 81974374 -115221058 + L2c LINE L2 3258 3309 -78 6 1210 309 51 0 0 chr1 81976102 81976141 -115219291 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 6 1210 1163 68 0 7 chr1 81976141 81976289 -115219143 - B1_Mus2 SINE Alu 0 147 1 6 1210 503 327 88 45 chr1 81976662 81976675 -115218757 + MLT1A0 LTR MaLR 5 17 -348 6 1210 3071 78 2 5 chr1 81976675 81977076 -115218356 + MTB LTR MaLR 1 400 0 6 1210 503 327 88 45 chr1 81977076 81977392 -115218040 + MLT1A0 LTR MaLR 18 348 -17 6 1210 233 81 111 16 chr1 81977802 81977865 -115217567 + GA-rich Low_complexity Low_complexity 2 70 0 6 1210 231 152 0 0 chr1 81978099 81978145 -115217287 + T-rich Low_complexity Low_complexity 1 46 0 6 1210 4909 56 11 0 chr1 81978178 81979138 -115216294 - L1_Mus1 LINE L1 -331 6236 5266 6 1210 2380 94 176 0 chr1 81979138 81979542 -115215890 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1210 535 124 16 124 chr1 81979543 81979672 -115215760 + IAPEz-int LTR ERVK 9 123 -6358 6 1210 229 267 0 0 chr1 81979672 81979717 -115215715 + RLTR27 LTR ERVK 231 275 -34 6 1210 240 327 0 0 chr1 81979743 81979798 -115215634 + RLTR27 LTR ERVK 221 275 -34 6 1210 3401 60 1 16 chr1 81979798 81980376 -115215056 + IAPEz-int LTR ERVK 168 662 -5819 6 1210 1921 75 41 0 chr1 81980376 81980643 -115214789 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1210 5820 36 4 19 chr1 81980642 81981397 -115214035 + IAPEz-int LTR ERVK 5736 6479 -2 6 1210 2354 99 176 0 chr1 81981399 81981803 -115213629 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1210 2735 47 20 0 chr1 81981831 81982172 -115213260 + L1_Mus1 LINE L1 6220 6567 0 6 1210 387 145 0 0 chr1 81982597 81982666 -115212766 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1210 229 298 21 0 chr1 81982666 81982760 -115212672 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1210 243 0 0 0 chr1 81984350 81984377 -115211055 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1210 243 308 125 6 chr1 81985225 81985415 -115210017 + L1MD3 LINE L1 5372 5586 -593 6 1210 450 231 214 0 chr1 81985554 81985671 -115209761 + B1_Mur3 SINE Alu 1 142 -7 6 1210 186 43 0 0 chr1 81985673 81985696 -115209736 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1210 311 356 52 6 chr1 81986052 81986230 -115209202 + L1MD3 LINE L1 5684 5869 -1916 6 1210 288 0 0 0 chr1 81986264 81986296 -115209136 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1210 23 0 0 0 chr1 81986795 81986818 -115208614 + AT_rich Low_complexity Low_complexity 1 23 0 7 1210 228 228 0 0 chr1 81987591 81987648 -115207784 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1210 416 333 0 0 chr1 81987877 81987979 -115207453 + MER5A DNA MER1_type 36 137 -52 7 1210 194 0 39 0 chr1 81988023 81988049 -115207383 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 1210 378 74 0 0 chr1 81988167 81988221 -115207211 + (TAA)n Simple_repeat Simple_repeat 1 54 0 7 1210 200 319 128 58 chr1 81988443 81988803 -115206629 + L2a LINE L2 1427 1811 -1608 7 1210 477 331 66 22 chr1 81988814 81988996 -115206436 + B4A SINE B4 3 192 -100 7 1210 186 276 25 38 chr1 81989445 81989524 -115205908 + L2a LINE L2 2571 2648 -771 7 1210 1916 159 81 14 chr1 81989569 81989938 -115205494 + ORR1B1 LTR MaLR 1 394 0 7 1210 261 299 169 51 chr1 81989980 81990234 -115205198 + L2a LINE L2 2783 3066 -353 7 1210 207 337 66 19 chr1 81990377 81990483 -115204949 + L2a LINE L2 3314 3424 -2 7 1210 6112 123 14 21 chr1 81991276 81992240 -115203192 + RMER17B LTR ERVK 1 958 0 7 1210 207 0 0 0 chr1 81992359 81992382 -115203050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1210 1046 256 94 60 chr1 81992669 81993172 -115202260 + MT2B LTR ERVL 3 601 0 7 1210 1267 213 62 119 chr1 81993326 81993714 -115201718 - MTE2a LTR MaLR 0 379 14 7 1210 477 50 0 0 chr1 81994028 81994088 -115201344 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1210 234 299 119 8 chr1 81994605 81994723 -115200709 + MER104 DNA Tc2 34 164 -17 7 1210 1870 72 43 7 chr1 81995105 81995383 -115200049 + L1_Mus3 LINE L1 6351 6638 0 7 1210 731 312 40 32 chr1 81995479 81995727 -115199705 + B4A SINE B4 1 250 -42 7 1210 375 41 0 0 chr1 81995901 81995950 -115199482 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1210 201 39 0 0 chr1 81998178 81998204 -115197228 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1210 28 0 0 0 chr1 81998329 81998357 -115197075 + AT_rich Low_complexity Low_complexity 1 28 0 7 1210 21 0 0 0 chr1 81998567 81998588 -115196844 + AT_rich Low_complexity Low_complexity 1 21 0 7 1210 23 0 0 0 chr1 81998692 81998715 -115196717 + AT_rich Low_complexity Low_complexity 1 23 0 7 1210 25 31 0 0 chr1 81999247 81999279 -115196153 + AT_rich Low_complexity Low_complexity 1 32 0 7 1210 216 97 0 0 chr1 81999372 81999403 -115196029 + (TTA)n Simple_repeat Simple_repeat 3 33 0 7 1210 718 312 9 24 chr1 82000952 82001162 -115194270 + ID_B1 SINE B4 18 224 0 1 1210 918 148 0 0 chr1 82001241 82001417 -115194015 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1210 225 0 0 0 chr1 82001418 82001443 -115193989 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 1210 2308 113 3 9 chr1 82002297 82002628 -115192804 + ORR1A4 LTR MaLR 1 329 0 4 1210 21 0 0 0 chr1 82003871 82003892 -115191540 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 396 0 0 0 chr1 82005054 82005098 -115190334 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1210 596 87 11 0 chr1 82005729 82005821 -115189611 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1210 252 0 0 0 chr1 82006691 82006719 -115188713 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1210 324 64 0 0 chr1 82006738 82006785 -115188647 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1210 387 0 0 0 chr1 82006785 82006827 -115188605 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1210 285 227 0 26 chr1 82007312 82007389 -115188043 + (ATGGTG)n Simple_repeat Simple_repeat 4 78 0 1 1210 488 326 54 27 chr1 82007400 82007624 -115187808 - MIR SINE MIR 0 262 33 1 1210 821 279 41 61 chr1 82008930 82009224 -115186208 - B4A SINE B4 0 292 5 1 1210 990 148 0 0 chr1 82009243 82009419 -115186013 + (GGAA)n Simple_repeat Simple_repeat 1 176 0 1 1210 1224 264 76 25 chr1 82010377 82010731 -115184701 - MTEa LTR MaLR 0 379 8 1 1210 2069 207 42 27 chr1 82011202 82011678 -115183754 - RLTR31A_Mm LTR ERVK -101 483 1 1 1210 185 132 26 0 chr1 82012203 82012241 -115183191 + GA-rich Low_complexity Low_complexity 2 40 0 1 1210 441 0 0 0 chr1 82012876 82012925 -115182507 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1210 206 62 0 30 chr1 82012925 82012958 -115182474 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1210 8054 41 1 1 chr1 82013322 82014991 -115180441 - L1Md_F2 LINE L1 0 6582 4915 2 1210 207 0 0 0 chr1 82015166 82015189 -115180243 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1210 1185 158 57 0 chr1 82017631 82017840 -115177592 + URR1A DNA MER1_type 6 226 0 2 1210 359 89 18 0 chr1 82017943 82017999 -115177433 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 2 1210 2087 226 137 64 chr1 82019229 82019622 -115175810 + RMER19A LTR ERVK 1 364 -373 2 1210 2672 31 0 15 chr1 82019622 82019951 -115175481 - L1Md_F3 LINE L1 -14 6570 6247 2 1210 2087 226 137 64 chr1 82019951 82020244 -115175188 + RMER19A LTR ERVK 365 737 0 2 1210 1383 243 91 6 chr1 82020334 82020674 -115174758 - ORR1D2 LTR MaLR 0 370 2 2 1210 713 240 63 29 chr1 82020735 82020941 -115174491 + B3 SINE B2 1 213 -3 2 1210 355 325 80 47 chr1 82021024 82021088 -115174344 + L1ME3 LINE L1 5317 5387 -775 2 1210 557 101 0 0 chr1 82021088 82021187 -115174245 + L1Md_F2 LINE L1 6480 6578 -4 2 1210 355 325 80 47 chr1 82021187 82021738 -115173694 + L1ME3 LINE L1 5388 5951 -211 2 1210 566 292 97 0 chr1 82021837 82022022 -115173410 - B3 SINE B2 -5 211 9 3 1210 22 70 0 0 chr1 82023473 82023516 -115171916 + AT_rich Low_complexity Low_complexity 1 43 0 3 1210 251 290 246 12 chr1 82023774 82023945 -115171487 - MLT1J LTR MaLR -3 509 299 3 1210 585 336 90 49 chr1 82024503 82024847 -115170585 - LTR16A LTR ERVL -54 397 40 3 1210 558 380 72 14 chr1 82024871 82025260 -115170172 - LTR16A LTR ERVL -14 437 1 3 1210 1104 99 13 5 chr1 82028377 82028766 -115166666 + (TAGA)n Simple_repeat Simple_repeat 1 391 0 3 1210 192 167 0 0 chr1 82028828 82028876 -115166556 + GA-rich Low_complexity Low_complexity 1 48 0 3 1210 466 302 134 32 chr1 82030100 82030384 -115165048 + L1ME3A LINE L1 5544 5856 -317 3 1210 277 290 0 0 chr1 82030413 82030475 -115164957 + B4 SINE B4 26 87 -205 3 1210 526 176 27 7 chr1 82030479 82030628 -115164804 + GA-rich Low_complexity Low_complexity 3 154 0 3 1210 374 135 12 108 chr1 82030688 82030771 -115164661 - ORR1C1 LTR MaLR 0 384 310 4 1210 7816 36 5 0 chr1 82030771 82031989 -115163443 - L1Md_F3 LINE L1 -16 6568 5345 4 1210 833 218 82 0 chr1 82031997 82032249 -115163183 - ORR1C1 LTR MaLR -77 297 1 4 1210 711 278 0 30 chr1 82032249 82032416 -115163016 + B4 SINE B4 127 288 -4 3 1210 630 0 0 0 chr1 82032819 82032889 -115162543 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1210 294 347 50 8 chr1 82033069 82033188 -115162244 - MER94 DNA AcHobo -5 129 6 4 1210 824 300 84 42 chr1 82033550 82033884 -115161548 + MLT1A0 LTR MaLR 18 365 0 4 1210 2059 83 0 4 chr1 82036150 82036428 -115159004 + L1_Mus4 LINE L1 6341 6617 -19 4 1210 423 0 0 0 chr1 82036428 82036475 -115158957 + (TAA)n Simple_repeat Simple_repeat 3 49 0 4 1210 1108 158 108 0 chr1 82036529 82036732 -115158700 + URR1A DNA MER1_type 2 226 0 4 1210 261 245 143 0 chr1 82036787 82036885 -115158547 + L1M2 LINE L1 5523 5634 -678 4 1210 447 176 0 0 chr1 82036983 82037074 -115158358 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1210 317 364 13 101 chr1 82040481 82040640 -115154792 - B4A SINE B4 -121 171 27 5 1210 2250 199 22 73 chr1 82040649 82041240 -115154192 - RLTR31_Mm LTR ERVK 0 561 1 5 1210 248 278 19 58 chr1 82041513 82041616 -115153816 + MLT1A LTR MaLR 276 374 0 5 1210 589 300 6 0 chr1 82043594 82043754 -115151678 + RSINE1 SINE B4 3 163 -2 5 1210 357 154 0 0 chr1 82044729 82044820 -115150612 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1210 471 112 0 0 chr1 82044866 82044955 -115150477 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 5 1210 252 0 0 0 chr1 82045418 82045446 -115149986 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1210 495 0 0 0 chr1 82045805 82045860 -115149572 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1210 267 79 0 0 chr1 82045860 82045897 -115149535 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1210 646 252 98 42 chr1 82045934 82046170 -115149262 - B4A SINE B4 -41 251 3 5 1210 2429 44 0 0 chr1 82046246 82046540 -115148892 + L1Md_A LINE L1 6289 6582 0 6 1210 1031 289 118 59 chr1 82047240 82047886 -115147546 - Lx8 LINE L1 -5 7468 6785 6 1210 965 312 12 47 chr1 82047927 82048330 -115147102 - Lx8 LINE L1 -846 6627 6239 6 1210 1151 251 125 20 chr1 82048356 82048795 -115146637 - Lx8 LINE L1 -10 5837 5353 6 1210 905 331 97 37 chr1 82048926 82049301 -115146131 + Lx8 LINE L1 6893 7289 -184 6 1210 450 0 0 0 chr1 82049301 82049351 -115146081 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1210 324 0 0 0 chr1 82049351 82049386 -115146046 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1210 905 331 97 37 chr1 82049386 82049555 -115145877 + Lx8 LINE L1 7290 7470 -3 6 1210 278 210 16 0 chr1 82049569 82049631 -115145801 - Lx8 LINE L1 -618 6855 6793 6 1211 2557 274 78 31 chr1 82053052 82053392 -115142040 + Lx9 LINE L1 6414 6767 -877 6 1211 450 0 0 0 chr1 82053392 82053442 -115141990 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1211 2557 274 78 31 chr1 82053442 82054155 -115141277 + Lx9 LINE L1 6768 7516 -128 6 1211 1141 78 0 8 chr1 82054167 82054414 -115141018 + (GAA)n Simple_repeat Simple_repeat 1 244 0 6 1211 23 68 0 0 chr1 82054507 82054551 -115140881 + AT_rich Low_complexity Low_complexity 1 44 0 6 1211 2573 45 0 0 chr1 82055661 82055975 -115139457 - L1Md_T LINE L1 0 6582 6269 7 1211 820 274 46 58 chr1 82056296 82056556 -115138876 - MLT1D LTR MaLR 0 505 249 7 1211 855 29 0 0 chr1 82056783 82056885 -115138547 + (TTC)n Simple_repeat Simple_repeat 2 103 0 7 1211 1189 50 0 0 chr1 82056888 82057029 -115138403 - B1_Mus1 SINE Alu -6 142 2 7 1211 403 347 68 44 chr1 82057086 82057336 -115138096 - MIRb SINE MIR -10 258 3 7 1211 9649 9 1 0 chr1 82058139 82059975 -115135457 - L1Md_A LINE L1 0 6582 4746 7 1211 2586 40 58 0 chr1 82060251 82060577 -115134855 + ORR1A1 LTR MaLR 1 345 -1 7 1211 184 77 51 0 chr1 82060653 82060692 -115134740 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 7 1211 231 306 71 24 chr1 82060909 82061036 -115134396 - Charlie8 DNA MER1_type -2167 261 129 7 1211 399 41 0 0 chr1 82064129 82064178 -115131254 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1211 252 226 82 12 chr1 82064403 82064488 -115130944 + L1MA5 LINE L1 6195 6285 -15 8 1211 31 0 0 0 chr1 82064612 82064643 -115130789 + AT_rich Low_complexity Low_complexity 1 31 0 8 1211 275 290 14 14 chr1 82064711 82064781 -115130651 + B4 SINE B4 5 74 -218 8 1211 228 286 62 49 chr1 82064838 82064919 -115130513 + MIRb SINE MIR 182 263 -5 8 1211 203 250 0 0 chr1 82065186 82065234 -115130198 + GA-rich Low_complexity Low_complexity 2 49 0 8 1211 575 276 28 50 chr1 82065925 82066104 -115129328 + B3A SINE B2 2 176 -22 8 1211 311 154 0 15 chr1 82066318 82066384 -115129048 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 8 1211 352 282 161 55 chr1 82066766 82066965 -115128467 + B4 SINE B4 17 236 -56 8 1211 307 300 102 25 chr1 82067528 82067764 -115127668 - L1M6 LINE L1 -4914 1582 1329 8 1211 180 0 0 0 chr1 82067845 82067865 -115127567 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8 1211 236 252 77 10 chr1 82068025 82068129 -115127303 - L1M6 LINE L1 -5455 1041 931 8 1211 4473 51 5 2 chr1 82068208 82068763 -115126669 - L1Md_F2 LINE L1 -1 6581 6025 9 1211 2361 141 47 33 chr1 82068912 82069337 -115126095 - Lx4B LINE L1 -4 7054 6624 9 1211 270 341 26 86 chr1 82069783 82069934 -115125498 - RMER15 LTR ERVL -154 421 280 9 1211 470 285 57 57 chr1 82072428 82072603 -115122829 - MER20 DNA MER1_type -5 214 40 9 1211 242 118 0 0 chr1 82074142 82074176 -115121256 + B1_Mur4 SINE Alu 1 34 -116 9 1211 503 200 26 26 chr1 82074997 82075110 -115120322 + RMER15 LTR ERVL 22 134 -441 9 1211 4691 81 131 8 chr1 82075148 82075868 -115119564 - RLTR13C2 LTR ERVK 0 808 1 9 1211 1104 254 83 86 chr1 82075875 82076224 -115119208 + RMER15 LTR ERVL 228 575 0 9 1211 1010 292 18 4 chr1 82077185 82077463 -115117969 + B4A SINE B4 1 282 -10 9 1211 275 224 9 0 chr1 82077492 82077599 -115117833 + (CA)n Simple_repeat Simple_repeat 2 109 0 9 1211 351 0 0 0 chr1 82077599 82077638 -115117794 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1211 609 207 17 17 chr1 82078041 82078213 -115117219 + (CATATA)n Simple_repeat Simple_repeat 1 172 0 1 1211 2394 141 8 6 chr1 82079245 82079609 -115115823 + ORR1B2 LTR MaLR 1 365 -2 1 1211 3051 76 2 45 chr1 82079731 82080171 -115115261 + BGLII LTR ERVK 1 421 0 1 1211 357 263 0 100 chr1 82080304 82080414 -115115018 + PB1 SINE Alu 22 120 -7 1 1211 2705 308 69 15 chr1 82083229 82084338 -115111094 + Lx8 LINE L1 6300 7468 -5 1 1211 229 149 21 21 chr1 82084358 82084406 -115111026 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 1 1211 284 243 114 0 chr1 82084618 82084688 -115110744 + MIR SINE MIR 100 177 -85 1 1211 379 228 8 8 chr1 82086531 82086655 -115108777 + GA-rich Low_complexity Low_complexity 2 125 0 1 1211 339 281 71 14 chr1 82088230 82088371 -115107061 + RMER15 LTR ERVL 409 557 -18 1 1211 304 336 33 0 chr1 82090650 82090772 -115104660 + MIR SINE MIR 44 169 -93 1 1211 662 259 34 7 chr1 82090773 82090921 -115104511 + RSINE1 SINE B4 6 157 -8 1 1211 361 187 26 39 chr1 82091163 82091241 -115104191 + ID_B1 SINE B4 144 220 -4 1 1211 229 289 72 22 chr1 82091701 82091839 -115103593 + L1MD LINE L1 4954 5098 -1048 1 1211 320 250 50 30 chr1 82091912 82092011 -115103421 + L1MD LINE L1 5094 5194 -952 1 1211 291 245 33 0 chr1 82092072 82092189 -115103243 + L1MD LINE L1 5295 5422 -762 1 1211 945 228 20 3 chr1 82092308 82092510 -115102922 - MTEa LTR MaLR 0 379 149 1 1211 302 194 0 14 chr1 82092510 82092583 -115102849 + G-rich Low_complexity Low_complexity 3 74 0 1 1211 887 238 18 37 chr1 82092592 82092810 -115102622 - MTEa LTR MaLR -165 214 1 1 1211 517 281 17 65 chr1 82093018 82093250 -115102182 + L1MD LINE L1 5455 5675 -684 1 1211 1777 132 24 76 chr1 82093411 82093739 -115101693 + ORR1A3 LTR MaLR 1 311 -15 1 1211 614 293 38 66 chr1 82094136 82094348 -115101084 + B3A SINE B2 8 213 -3 1 1211 1939 171 53 6 chr1 82094678 82095037 -115100395 + ORR1C1 LTR MaLR 3 378 0 1 1211 288 400 13 13 chr1 82095398 82095555 -115099877 + MIR SINE MIR 105 261 -1 1 1211 1055 139 0 6 chr1 82095638 82095819 -115099613 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1211 214 190 0 23 chr1 82096079 82096122 -115099310 + GA-rich Low_complexity Low_complexity 4 45 0 1 1211 1043 49 7 20 chr1 82096372 82096518 -115098914 + L1Md_F2 LINE L1 6426 6569 -13 1 1211 504 0 0 0 chr1 82097500 82097556 -115097876 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1211 284 64 0 21 chr1 82097677 82097725 -115097707 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1211 1098 72 0 0 chr1 82097725 82097863 -115097569 - B1_Mus2 SINE Alu -8 139 2 1 1211 423 0 0 0 chr1 82097878 82097925 -115097507 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1211 28 48 0 0 chr1 82098267 82098309 -115097123 + AT_rich Low_complexity Low_complexity 1 42 0 1 1211 904 258 30 25 chr1 82098315 82098518 -115096914 - B3 SINE B2 -11 205 2 1 1211 2196 164 92 10 chr1 82099078 82099467 -115095965 - MTC LTR MaLR 0 421 1 1 1211 2817 25 0 27 chr1 82100297 82100633 -115094799 + IAPLTR2b LTR ERVK 1 327 0 1 1211 189 74 0 0 chr1 82100880 82100907 -115094525 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1211 200 311 0 0 chr1 82100908 82100969 -115094463 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1211 436 289 19 0 chr1 82101246 82101350 -115094082 - PB1D10 SINE Alu 0 117 12 1 1211 335 315 17 43 chr1 82101271 82101387 -115094045 - ID_B1 SINE B4 -51 173 61 1 1211 222 200 0 0 chr1 82101387 82101427 -115094005 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1 1211 1172 275 59 22 chr1 82101427 82101747 -115093685 - ORR1E LTR MaLR -23 336 5 1 1211 282 116 0 0 chr1 82102758 82102801 -115092631 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1211 437 326 14 20 chr1 82104425 82104572 -115090860 - RSINE1 SINE B4 -16 149 4 1 1211 728 326 39 18 chr1 82106142 82106426 -115089006 + B4A SINE B4 1 290 -2 1 1211 23 0 0 0 chr1 82106588 82106611 -115088821 + AT_rich Low_complexity Low_complexity 1 23 0 1 1211 306 282 0 48 chr1 82107291 82107402 -115088030 - BC1_Mm scRNA scRNA -42 110 5 1 1211 670 293 104 51 chr1 82108166 82108579 -115086853 + L1MC1 LINE L1 5883 6317 -16 1 1211 717 131 0 0 chr1 82109486 82109609 -115085823 + (TC)n Simple_repeat Simple_repeat 1 123 0 1 1211 195 69 0 0 chr1 82109609 82109638 -115085794 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1211 717 131 0 0 chr1 82109638 82109651 -115085781 + (TC)n Simple_repeat Simple_repeat 2 14 0 1 1211 391 272 160 62 chr1 82110027 82110340 -115085092 - MLT1H LTR MaLR -149 340 2 1 1211 394 276 20 10 chr1 82110855 82110954 -115084478 + PB1D10 SINE Alu 10 109 -8 1 1211 380 324 73 73 chr1 82110993 82111213 -115084219 + ID_B1 SINE B4 3 222 -2 1 1211 31 26 0 0 chr1 82111781 82111819 -115083613 + AT_rich Low_complexity Low_complexity 1 38 0 1 1211 664 273 38 62 chr1 82111865 82112025 -115083407 + RSINE1 SINE B4 10 165 0 1 1211 631 181 142 0 chr1 82112611 82112738 -115082694 + B1_Mus1 SINE Alu 4 148 0 1 1211 1850 154 59 59 chr1 82113611 82114019 -115081413 + RMER17C LTR ERVK 3 410 0 1 1211 3358 171 14 36 chr1 82114183 82114826 -115080606 - RMER19A LTR ERVK -16 721 1 1 1211 1145 247 97 9 chr1 82115509 82115840 -115079592 - ORR1D1 LTR MaLR -13 361 2 1 1211 1249 245 87 35 chr1 82116513 82116860 -115078572 - ORR1D2 LTR MaLR 0 370 6 1 1211 1277 319 43 17 chr1 82116901 82117485 -115077947 + L1MA9 LINE L1 5463 6061 -251 1 1211 1447 146 14 5 chr1 82117730 82117951 -115077481 - URR1A DNA MER1_type -3 223 1 1 1211 628 106 38 9 chr1 82118462 82118557 -115076875 + L1Md_F LINE L1 250 346 -6173 1 1211 1484 107 14 9 chr1 82118557 82118775 -115076657 + L1Md_F2 LINE L1 6352 6570 -12 1 1211 488 149 0 26 chr1 82119731 82119807 -115075625 - B1_Mur1 SINE Alu -2 147 74 1 1211 431 282 20 40 chr1 82120666 82120814 -115074618 + MTEa LTR MaLR 235 379 0 1 1211 183 80 0 0 chr1 82122507 82122532 -115072900 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1211 183 42 0 0 chr1 82123279 82123303 -115072129 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1 1211 879 168 8 0 chr1 82123318 82123449 -115071983 + B1_Mur4 SINE Alu 1 132 -18 1 1211 612 73 0 0 chr1 82123449 82123531 -115071901 + (GGA)n Simple_repeat Simple_repeat 3 84 0 1 1211 205 351 85 20 chr1 82124267 82124393 -115071039 + L2c LINE L2 2943 3075 -351 1 1211 423 0 0 0 chr1 82124409 82124456 -115070976 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1211 22 0 0 0 chr1 82124503 82124525 -115070907 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 276 338 115 75 chr1 82124631 82124884 -115070548 + ORR1E LTR MaLR 97 359 0 1 1211 1017 254 0 14 chr1 82125149 82125365 -115070067 + B3 SINE B2 3 215 -1 1 1211 515 287 115 20 chr1 82125659 82125911 -115069521 - B4 SINE B4 -15 277 2 1 1211 465 19 0 0 chr1 82125928 82125982 -115069450 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1211 243 0 0 0 chr1 82127172 82127199 -115068233 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1211 3327 150 42 0 chr1 82127304 82127359 -115068073 + L1_Mur2 LINE L1 4669 4723 -1154 1 1211 263 0 41 41 chr1 82127359 82127408 -115068024 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1211 3327 150 42 0 chr1 82127408 82127917 -115067515 + L1_Mur2 LINE L1 4724 5256 -621 1 1211 763 39 19 0 chr1 82128213 82128316 -115067116 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1211 513 179 0 0 chr1 82128316 82128416 -115067016 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1211 1048 275 98 49 chr1 82129218 82129726 -115065706 - MT2A LTR ERVL 0 533 1 1 1211 232 389 45 8 chr1 82129878 82130010 -115065422 + MER5A DNA MER1_type 4 140 -49 1 1211 1559 253 39 3 chr1 82130060 82130424 -115065008 + MTEa LTR MaLR 1 377 -2 1 1211 456 116 0 0 chr1 82130692 82130778 -115064654 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1211 205 146 49 0 chr1 82130778 82130819 -115064613 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 1 1211 387 0 0 0 chr1 82131872 82131915 -115063517 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1211 261 0 0 0 chr1 82132280 82132309 -115063123 + (TGG)n Simple_repeat Simple_repeat 1 29 0 1 1211 238 163 41 0 chr1 82132319 82132368 -115063064 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1211 989 241 71 68 chr1 82133058 82133339 -115062093 + B4 SINE B4 1 282 -10 1 1211 882 310 106 6 chr1 82134040 82134361 -115061071 + ORR1E LTR MaLR 1 353 -6 1 1211 995 278 38 15 chr1 82134723 82134986 -115060446 + Lx9 LINE L1 6370 6638 -1006 1 1211 811 127 22 7 chr1 82135023 82135158 -115060274 + ORR1C1 LTR MaLR 1 137 -241 1 1211 950 102 8 0 chr1 82135156 82135284 -115060148 + B1_Mus1 SINE Alu 12 140 -8 1 1211 279 0 0 0 chr1 82135324 82135355 -115060077 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1211 2095 184 8 14 chr1 82135457 82135826 -115059606 - ORR1B2 LTR MaLR 0 367 1 1 1211 450 0 0 0 chr1 82135969 82136019 -115059413 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1211 1089 94 19 6 chr1 82136112 82136273 -115059159 - L1_Mus3 LINE L1 -4 6634 6472 1 1211 372 59 0 0 chr1 82136454 82136505 -115058927 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1211 461 143 47 12 chr1 82137303 82137388 -115058044 + Lx9 LINE L1 7380 7467 -177 1 1211 270 0 0 0 chr1 82137395 82137425 -115058007 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1211 362 172 60 90 chr1 82137425 82137559 -115057873 + Lx9 LINE L1 7515 7644 0 1 1211 917 256 85 0 chr1 82137717 82137928 -115057504 + B4A SINE B4 2 230 -62 1 1211 617 211 69 23 chr1 82137940 82138071 -115057361 + B1_Mur4 SINE Alu 14 150 0 1 1211 495 306 64 100 chr1 82138284 82138564 -115056868 - ORR1E LTR MaLR -15 344 75 1 1211 385 291 6 24 chr1 82139372 82139541 -115055891 + (CATA)n Simple_repeat Simple_repeat 2 167 0 2 1211 332 327 18 6 chr1 82139503 82139672 -115055760 + (CA)n Simple_repeat Simple_repeat 2 172 0 2 1211 1284 184 20 0 chr1 82139679 82139728 -115055704 - MTE2b LTR MaLR -3 367 318 2 1211 576 0 0 0 chr1 82139728 82139792 -115055640 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 2 1211 1284 249 112 3 chr1 82139792 82140081 -115055351 - MTE2b LTR MaLR -54 325 3 2 1211 213 319 17 8 chr1 82140086 82140203 -115055229 + (CA)n Simple_repeat Simple_repeat 2 119 0 2 1211 282 243 157 0 chr1 82140717 82140787 -115054645 - MER5A1 DNA MER1_type -40 126 46 2 1211 704 61 10 0 chr1 82141247 82141345 -115054087 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 2 1211 974 73 0 0 chr1 82142609 82142732 -115052700 + L1_Mus1 LINE L1 5770 5892 -675 2 1211 334 261 0 14 chr1 82142903 82142973 -115052459 + MTEa LTR MaLR 41 109 -250 2 1211 350 301 66 50 chr1 82142994 82143190 -115052242 + MTEa LTR MaLR 205 379 0 2 1211 2262 99 17 67 chr1 82143191 82143537 -115051895 - ORR1A4 LTR MaLR 0 329 1 2 1211 2416 227 31 25 chr1 82143629 82144184 -115051248 + RMER1C Other Other 289 1318 -24 2 1211 181 269 198 9 chr1 82144736 82144852 -115050580 + L2 LINE L2 2279 2416 -1003 2 1211 204 40 0 0 chr1 82145359 82145384 -115050048 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1211 1256 238 80 111 chr1 82145433 82145820 -115049612 - MTE2b LTR MaLR -4 375 1 2 1211 1216 267 118 18 chr1 82146306 82146687 -115048745 - MTD LTR MaLR 0 419 1 2 1211 1884 108 11 18 chr1 82146720 82147004 -115048428 - ORR1A4 LTR MaLR 0 329 48 2 1211 638 172 0 8 chr1 82148020 82148149 -115047283 + CT-rich Low_complexity Low_complexity 3 130 0 2 1211 292 263 19 66 chr1 82148152 82148258 -115047174 - PB1D10 SINE Alu -9 108 8 2 1211 212 307 19 65 chr1 82148161 82148269 -115047163 - ID_B1 SINE B4 -45 179 77 2 1211 1214 75 0 0 chr1 82148870 82149016 -115046416 + B1_Mus2 SINE Alu 2 147 0 2 1211 418 264 82 0 chr1 82149560 82149670 -115045762 + MER21B LTR ERV1 261 379 -484 2 1211 256 302 16 0 chr1 82149682 82149745 -115045687 + MER21B LTR ERV1 643 706 -157 2 1211 427 251 382 43 chr1 82149759 82150106 -115045326 - RMER20B LTR ERVK -38 589 126 2 1211 483 18 0 0 chr1 82150253 82150309 -115045123 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 2 1211 986 41 0 0 chr1 82150309 82150430 -115045002 - B1_Mm SINE Alu -10 137 17 2 1211 9052 29 0 0 chr1 82150433 82151423 -115044009 + L1Md_T LINE L1 5593 6582 0 2 1211 249 119 0 0 chr1 82152051 82152093 -115043339 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1211 1103 284 14 29 chr1 82152113 82152392 -115043040 - B4A SINE B4 -8 284 10 2 1211 1290 302 98 40 chr1 82152404 82152976 -115042456 - Charlie13a DNA Charlie -241 1273 669 2 1211 601 346 67 48 chr1 82153303 82153679 -115041753 - MLT1H LTR MaLR -4 545 163 2 1211 1188 157 98 0 chr1 82153952 82154156 -115041276 - URR1A DNA MER1_type -1 225 2 2 1211 589 310 122 39 chr1 82154384 82154767 -115040665 + MLT2B4 LTR ERVL 20 402 -12 2 1211 238 329 41 41 chr1 82155333 82155479 -115039953 + MLT2F LTR ERVL 1 146 -517 2 1211 438 274 8 39 chr1 82155536 82155665 -115039767 + MLT1E1A LTR MaLR 148 272 -408 2 1211 282 213 161 11 chr1 82156036 82156128 -115039304 + MLT2B4 LTR ERVL 468 559 0 2 1211 229 328 50 59 chr1 82156200 82156396 -115039036 + MIRc SINE MIR 19 218 -50 2 1211 804 151 0 0 chr1 82156618 82156764 -115038668 + GA-rich Low_complexity Low_complexity 1 146 0 2 1211 240 278 69 101 chr1 82157183 82157237 -115038195 - B2_Mm2 SINE B2 -11 184 3 2 1211 640 256 52 8 chr1 82157237 82157371 -115038061 - RSINE1 SINE B4 -22 143 4 2 1211 1282 206 195 11 chr1 82157402 82157766 -115037666 - Lx9 LINE L1 -2 7642 7212 2 1211 22 0 0 0 chr1 82158235 82158257 -115037175 + AT_rich Low_complexity Low_complexity 1 22 0 2 1211 180 45 0 0 chr1 82158507 82158529 -115036903 + L2b LINE L2 3333 3354 -21 2 1211 191 88 29 0 chr1 82160173 82160207 -115035225 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1211 295 180 0 0 chr1 82160261 82160311 -115035121 - L1_Mur1 LINE L1 -4342 1544 1495 2 1211 2832 207 24 1 chr1 82160307 82160916 -115034516 + Lx4B LINE L1 6214 6832 -168 2 1211 3660 250 73 121 chr1 82160914 82161680 -115033752 - Lx7 LINE L1 -668 7028 6205 2 1211 360 0 0 0 chr1 82161680 82161720 -115033712 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1211 3660 250 73 121 chr1 82161720 82161898 -115033534 - Lx7 LINE L1 -1492 6204 6142 2 1211 1516 68 10 25 chr1 82161898 82162094 -115033338 - B2_Mm1t SINE B2 0 193 1 2 1211 3660 250 73 121 chr1 82162094 82162325 -115033107 - Lx7 LINE L1 -1555 6141 5925 2 1211 3606 36 2 0 chr1 82162325 82162718 -115032714 - MTA_Mm LTR MaLR 0 396 3 2 1211 5293 225 49 75 chr1 82162718 82162900 -115032532 - Lx7 LINE L1 -1772 5924 5740 2 1211 417 39 0 0 chr1 82162900 82162951 -115032481 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1211 5293 213 39 55 chr1 82162951 82164154 -115031278 - Lx7 LINE L1 -141 5739 4568 2 1211 322 244 45 105 chr1 82164266 82164399 -115031033 - MLT2D LTR ERVL -279 135 11 2 1211 1049 282 38 19 chr1 82164455 82164722 -115030710 + Lx7 LINE L1 6462 6733 -963 2 1211 274 321 114 40 chr1 82164733 82164908 -115030524 + MER20 DNA MER1_type 32 219 0 2 1211 233 373 155 39 chr1 82164923 82165311 -115030121 + L2b LINE L2 2942 3374 -1 2 1211 183 42 0 0 chr1 82165946 82165970 -115029462 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1211 422 108 12 0 chr1 82166661 82166744 -115028688 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1211 366 23 0 0 chr1 82166744 82166787 -115028645 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1211 381 329 136 62 chr1 82166815 82167058 -115028374 - MLT1J2 LTR MaLR -172 276 16 2 1211 480 320 113 69 chr1 82167314 82167633 -115027799 + LTR16E2 LTR ERVL 44 376 -192 2 1211 267 357 98 29 chr1 82167731 82167904 -115027528 + LTR16E2 LTR ERVL 384 568 0 2 1211 1396 168 0 38 chr1 82168028 82168263 -115027169 + URR1A DNA MER1_type 1 226 0 2 1211 769 291 109 30 chr1 82169773 82170039 -115025393 + B4A SINE B4 6 292 0 2 1211 320 77 19 0 chr1 82170053 82170105 -115025327 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1211 251 207 17 0 chr1 82170105 82170163 -115025269 + GA-rich Low_complexity Low_complexity 2 60 0 2 1211 6271 75 78 94 chr1 82170195 82170710 -115024722 + L1Md_Gf LINE L1 59 615 -5907 2 1211 227 316 59 59 chr1 82170710 82170811 -115024621 + RLTR45 LTR ERVK 4 104 -378 2 1211 6271 75 78 94 chr1 82170811 82171297 -115024135 + L1Md_Gf LINE L1 616 1142 -5380 2 1211 36165 42 0 1 chr1 82171263 82175650 -115019782 + L1Md_F2 LINE L1 1203 5585 -298 2 1211 8289 58 4 2 chr1 82175651 82176644 -115018788 + L1Md_F2 LINE L1 5587 6581 -1 2 1211 32 26 0 0 chr1 82176647 82176686 -115018746 + AT_rich Low_complexity Low_complexity 1 39 0 2 1211 279 0 0 0 chr1 82177787 82177818 -115017614 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1211 269 137 61 31 chr1 82178281 82178379 -115017053 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1211 678 294 86 62 chr1 82178894 82179279 -115016153 - MLT1E1A LTR MaLR 0 680 287 2 1211 235 217 247 11 chr1 82179340 82179433 -115015999 - MLT1E1A LTR MaLR -553 127 13 2 1211 858 252 104 44 chr1 82179786 82180056 -115015376 + B4A SINE B4 4 289 -3 2 1211 276 275 12 36 chr1 82180146 82180229 -115015203 + B3A SINE B2 4 84 -114 2 1211 257 383 34 34 chr1 82180248 82180456 -115014976 + MIRb SINE MIR 10 217 -51 2 1211 664 240 50 72 chr1 82181353 82181567 -115013865 + B3A SINE B2 1 208 -8 2 1211 22 35 0 0 chr1 82181586 82181615 -115013817 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 272 211 158 0 chr1 82182601 82182658 -115012774 + ID4 SINE ID 18 83 0 2 1212 1113 297 10 30 chr1 82183992 82184287 -115011145 + B4A SINE B4 4 292 0 2 1212 441 36 0 0 chr1 82184701 82184756 -115010676 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 2 1212 3005 97 40 24 chr1 82186503 82186926 -115008506 + RLTR23 LTR ERV1 1 430 0 2 1212 2377 161 17 3 chr1 82187110 82187472 -115007960 - ORR1B2 LTR MaLR 0 367 1 2 1212 700 236 0 0 chr1 82187472 82187599 -115007833 + B1_Mur1 SINE Alu 12 138 -11 2 1212 464 157 0 0 chr1 82187620 82187690 -115007742 + B1_Mur1 SINE Alu 59 128 -21 2 1212 864 315 124 30 chr1 82189382 82189785 -115005647 - MLT2B1 LTR ERVL 0 520 80 2 1212 688 313 97 39 chr1 82190195 82190627 -115004805 + Charlie4a DNA MER1_type 7 463 -45 2 1212 1143 175 10 0 chr1 82190649 82190843 -115004589 - URR1B DNA MER1_type 0 225 30 2 1212 213 186 85 0 chr1 82191355 82191414 -115004018 + CT-rich Low_complexity Low_complexity 3 66 0 2 1212 981 298 42 31 chr1 82192035 82192392 -115003040 - MER67A LTR ERV1 -175 368 8 2 1212 317 211 0 14 chr1 82192526 82192598 -115002834 + MADE2 DNA Mariner 10 80 0 2 1212 384 22 0 0 chr1 82192794 82192839 -115002593 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1212 856 181 8 0 chr1 82192839 82192972 -115002460 - B1_Mus1 SINE Alu -11 137 4 2 1212 1000 283 25 14 chr1 82193059 82193342 -115002090 + B4A SINE B4 1 286 -6 2 1212 960 150 0 13 chr1 82193391 82193540 -115001892 + B1_Mus1 SINE Alu 1 147 -1 2 1212 22 0 0 0 chr1 82193955 82193977 -115001455 + AT_rich Low_complexity Low_complexity 1 22 0 2 1212 922 214 25 30 chr1 82194100 82194298 -115001134 + B3A SINE B2 1 197 -1 2 1212 301 289 67 79 chr1 82194667 82194832 -115000600 - MLT1A LTR MaLR -205 169 7 2 1212 1197 299 43 76 chr1 82195004 82195492 -114999940 - MT2A LTR ERVL 0 533 62 2 1212 251 182 0 35 chr1 82195532 82195589 -114999843 - MTE2a LTR MaLR -322 57 3 2 1212 609 260 130 16 chr1 82195708 82195892 -114999540 + B3 SINE B2 6 210 -6 2 1212 201 74 0 0 chr1 82195956 82195983 -114999449 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1212 813 299 60 39 chr1 82195993 82196278 -114999154 - B4 SINE B4 -1 291 1 2 1212 516 32 0 0 chr1 82196933 82196995 -114998437 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1212 404 171 0 12 chr1 82197030 82197113 -114998319 + GA-rich Low_complexity Low_complexity 2 83 0 2 1212 339 318 59 7 chr1 82198421 82198573 -114996859 + Tigger16a DNA Tigger 714 873 -60 3 1212 725 58 10 0 chr1 82198631 82198734 -114996698 + (TC)n Simple_repeat Simple_repeat 2 105 0 3 1212 441 124 32 16 chr1 82198749 82198872 -114996560 + (TCTG)n Simple_repeat Simple_repeat 2 126 0 3 1212 208 239 14 29 chr1 82199071 82199140 -114996292 + T-rich Low_complexity Low_complexity 2 69 0 3 1212 1602 242 57 12 chr1 82199843 82200261 -114995171 + BGLII_B LTR ERVK 5 441 0 3 1212 545 286 58 34 chr1 82202987 82203193 -114992239 + MLT1A0 LTR MaLR 115 325 -40 3 1212 196 323 147 59 chr1 82203268 82203403 -114992029 - L2a LINE L2 -18 3408 3261 3 1212 396 0 0 0 chr1 82203403 82203447 -114991985 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1212 196 323 147 59 chr1 82203447 82203617 -114991815 - L2a LINE L2 -166 3260 3077 3 1212 344 296 0 22 chr1 82205000 82205090 -114990342 + ID_B1 SINE B4 85 172 -52 3 1212 950 284 67 100 chr1 82205113 82205532 -114989900 - MTD LTR MaLR -14 405 1 3 1212 21 82 0 0 chr1 82206276 82206325 -114989107 + AT_rich Low_complexity Low_complexity 1 49 0 3 1212 434 320 6 124 chr1 82206325 82206392 -114989040 - RSINE1 SINE B4 -7 158 99 3 1212 4049 147 31 16 chr1 82206392 82207070 -114988362 - RMER6C LTR ERVK 0 690 3 3 1212 434 320 6 124 chr1 82207070 82207180 -114988252 - RSINE1 SINE B4 -67 98 2 3 1212 450 53 0 0 chr1 82207715 82207772 -114987660 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1212 1317 27 7 0 chr1 82208743 82208889 -114986543 + B1_Mm SINE Alu 1 147 0 3 1212 23 0 0 0 chr1 82209145 82209168 -114986264 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 970 286 167 13 chr1 82209229 82209625 -114985807 + MLT1D LTR MaLR 45 501 -4 3 1212 266 298 33 66 chr1 82211297 82211419 -114984013 - LTR78 LTR ERV1 -432 872 755 3 1212 291 310 0 0 chr1 82211885 82211956 -114983476 + RMER15 LTR ERVL 392 462 -113 3 1212 249 33 0 0 chr1 82211957 82211987 -114983445 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1212 1507 80 11 0 chr1 82212299 82212487 -114982945 - B2_Mm1t SINE B2 -2 191 2 3 1212 1113 141 0 3 chr1 82212808 82213102 -114982330 + (TG)n Simple_repeat Simple_repeat 1 293 0 3 1212 606 312 39 5 chr1 82213378 82213581 -114981851 - MER2 DNA MER2_type -13 332 123 3 1212 381 216 102 0 chr1 82213714 82213802 -114981630 - MER2B DNA MER2_type -171 165 69 3 1212 1645 171 60 57 chr1 82213808 82214193 -114981239 - Lx7 LINE L1 0 7696 7311 3 1212 3644 192 43 6 chr1 82214207 82214907 -114980525 - Lx7 LINE L1 -537 7159 6434 3 1212 306 0 0 0 chr1 82216262 82216296 -114979136 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1212 372 266 169 60 chr1 82216346 82216594 -114978838 - B4 SINE B4 -15 277 3 3 1212 255 380 45 30 chr1 82216795 82216996 -114978436 + MIRb SINE MIR 23 226 -42 3 1212 214 191 0 0 chr1 82218315 82218357 -114977075 + A-rich Low_complexity Low_complexity 1 42 0 3 1212 634 88 52 9 chr1 82218684 82218799 -114976633 + L1_Mus3 LINE L1 6516 6635 -3 3 1212 943 336 10 47 chr1 82219410 82219642 -114975790 + B4 SINE B4 1 229 -63 3 1212 270 0 0 0 chr1 82219642 82219672 -114975760 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1212 943 336 10 47 chr1 82219672 82219736 -114975696 + B4 SINE B4 230 286 -6 3 1212 711 249 106 10 chr1 82220855 82221054 -114974378 - B4A SINE B4 -38 254 37 3 1212 1710 164 40 81 chr1 82221058 82221429 -114974003 + ORR1B1 LTR MaLR 39 394 0 3 1212 26 0 0 0 chr1 82221496 82221522 -114973910 + AT_rich Low_complexity Low_complexity 1 26 0 3 1212 10001 79 16 12 chr1 82221522 82223243 -114972189 - Lx3_Mus LINE L1 0 7009 5284 3 1212 189 0 0 0 chr1 82223243 82223264 -114972168 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 1212 2745 53 0 6 chr1 82223322 82223646 -114971786 - L1_Mus1 LINE L1 0 6567 6246 3 1212 215 280 133 0 chr1 82223820 82223895 -114971537 - MIR SINE MIR -85 123 39 3 1212 212 77 26 0 chr1 82224160 82224199 -114971233 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1212 2049 210 13 0 chr1 82224204 82224599 -114970833 - Lx LINE L1 -15 6639 6240 3 1212 540 195 13 7 chr1 82224654 82224804 -114970628 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 1212 3684 53 7 0 chr1 82225969 82226403 -114969029 + L1Md_T LINE L1 6146 6582 0 3 1212 220 329 14 14 chr1 82227069 82227140 -114968292 - ID4 SINE ID -11 72 2 3 1212 22 35 0 0 chr1 82227780 82227809 -114967623 + AT_rich Low_complexity Low_complexity 1 29 0 3 1212 2396 143 42 10 chr1 82227839 82228248 -114967184 - Lx2B LINE L1 0 7000 6579 3 1212 1447 234 77 55 chr1 82228551 82228913 -114966519 + ORR1D2 LTR MaLR 1 370 0 3 1212 194 308 97 21 chr1 82229162 82229255 -114966177 + MER5B DNA MER1_type 76 175 -3 3 1212 205 289 19 0 chr1 82235106 82235158 -114960274 + MIRm SINE MIR 209 261 -15 3 1212 560 209 0 28 chr1 82235508 82235616 -114959816 - PB1D10 SINE Alu -11 106 2 3 1212 212 0 36 0 chr1 82236356 82236384 -114959048 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1212 434 338 13 0 chr1 82236783 82236937 -114958495 - MARNA DNA Mariner -165 421 266 3 1212 864 296 8 24 chr1 82238835 82239084 -114956348 - B4A SINE B4 -22 270 26 3 1212 1246 185 19 9 chr1 82240432 82240645 -114954787 + B3 SINE B2 1 215 -1 3 1212 941 247 173 19 chr1 82240809 82241127 -114954305 + MTEb LTR MaLR 5 371 -8 3 1212 941 259 134 50 chr1 82242612 82242970 -114952462 - MTD LTR MaLR -14 405 18 3 1212 284 359 14 34 chr1 82243176 82243323 -114952109 + MIRb SINE MIR 74 217 -51 3 1212 641 317 58 22 chr1 82244362 82244639 -114950793 - B4 SINE B4 -4 288 2 3 1212 1248 49 7 0 chr1 82244766 82244910 -114950522 - B1_Mus1 SINE Alu 0 148 4 3 1212 257 286 79 18 chr1 82245094 82245197 -114950235 + MLT1A0 LTR MaLR 214 323 -42 3 1212 845 296 27 146 chr1 82245197 82245600 -114949832 + ORR1E LTR MaLR 1 355 -4 3 1212 597 327 24 57 chr1 82245847 82246058 -114949374 + MER20 DNA MER1_type 16 219 0 3 1212 423 234 0 0 chr1 82247092 82247237 -114948195 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1212 250 371 50 17 chr1 82249544 82249725 -114945707 - MIRb SINE MIR -24 244 58 3 1212 468 0 0 0 chr1 82250695 82250747 -114944685 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 3 1212 371 358 77 41 chr1 82250875 82250938 -114944494 + ID_B1 SINE B4 35 98 -126 3 1212 2713 171 20 66 chr1 82250938 82251526 -114943906 + RLTR31_Mm LTR ERVK 1 561 0 3 1212 371 358 77 41 chr1 82251526 82251631 -114943801 + ID_B1 SINE B4 99 209 -15 3 1212 744 279 64 35 chr1 82251905 82252147 -114943285 + B4A SINE B4 1 247 -45 3 1212 324 0 0 0 chr1 82252147 82252183 -114943249 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 3 1212 744 279 64 35 chr1 82252183 82252222 -114943210 + B4A SINE B4 248 289 -3 3 1212 1230 36 0 0 chr1 82253022 82253159 -114942273 + B1_Mm SINE Alu 1 137 -10 3 1212 180 0 0 0 chr1 82253599 82253619 -114941813 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1212 234 0 0 0 chr1 82254944 82254970 -114940462 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1212 477 0 0 0 chr1 82255789 82255842 -114939590 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1212 1033 143 0 7 chr1 82255909 82256057 -114939375 - B1_Mus1 SINE Alu -1 147 1 3 1212 193 287 90 22 chr1 82256712 82256801 -114938631 + MIRb SINE MIR 161 255 -13 3 1212 44 20 0 0 chr1 82257123 82257174 -114938258 + AT_rich Low_complexity Low_complexity 1 51 0 3 1212 234 0 0 0 chr1 82258553 82258579 -114936853 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1212 698 267 125 91 chr1 82259669 82259933 -114935499 + B4A SINE B4 2 274 -18 3 1212 207 0 0 0 chr1 82260023 82260046 -114935386 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1212 719 274 0 37 chr1 82261506 82261669 -114933763 + RSINE1 SINE B4 3 159 -6 3 1212 203 156 0 0 chr1 82261676 82261708 -114933724 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1212 201 314 19 0 chr1 82261857 82261917 -114933515 + L2a LINE L2 3221 3331 -95 3 1212 382 169 105 0 chr1 82261930 82262021 -114933411 - PB1D10 SINE Alu 0 120 18 3 1212 284 345 17 17 chr1 82263591 82263709 -114931723 - MIRc SINE MIR -28 240 123 3 1212 183 42 0 0 chr1 82264494 82264518 -114930914 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1212 576 133 0 0 chr1 82264740 82264860 -114930572 + (TC)n Simple_repeat Simple_repeat 2 121 0 3 1212 378 0 0 0 chr1 82264860 82264902 -114930530 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1212 307 250 13 12 chr1 82265621 82265706 -114929726 + L1MC3 LINE L1 5833 5917 -2078 3 1212 587 264 36 57 chr1 82265765 82265958 -114929474 + L1MC3 LINE L1 6199 6387 -1398 3 1212 3600 130 28 33 chr1 82265966 82266540 -114928892 + RMER15 LTR ERVL 5 575 0 3 1212 716 250 7 0 chr1 82268192 82268332 -114927100 - B1_Mur1 SINE Alu -7 142 2 3 1212 629 199 30 30 chr1 82268742 82268877 -114926555 - B1_Mur2 SINE Alu -3 146 12 3 1212 707 294 11 23 chr1 82269112 82269286 -114926146 + B4A SINE B4 1 172 -120 3 1212 303 28 0 0 chr1 82269286 82269322 -114926110 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1212 429 20 0 0 chr1 82270156 82270206 -114925226 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1212 306 0 0 0 chr1 82270580 82270614 -114924818 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1212 324 111 0 0 chr1 82270614 82270667 -114924765 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1212 252 250 18 0 chr1 82271329 82271385 -114924047 + GA-rich Low_complexity Low_complexity 1 57 0 3 1212 254 254 18 0 chr1 82271464 82271519 -114923913 + RMER30 DNA MER1_type 25 80 -122 3 1212 240 315 139 76 chr1 82271633 82271791 -114923641 + B4 SINE B4 123 290 -2 3 1212 483 18 0 0 chr1 82271823 82271879 -114923553 + (CATA)n Simple_repeat Simple_repeat 4 59 0 3 1212 344 292 29 58 chr1 82272127 82272265 -114923167 + MLT1H2 LTR MaLR 348 481 -8 4 1212 1031 187 64 0 chr1 82273237 82273424 -114922008 - B3 SINE B2 -14 202 4 4 1212 1128 270 83 20 chr1 82273457 82274018 -114921414 + L1_Mur3 LINE L1 5140 5769 -522 4 1212 382 69 0 49 chr1 82274011 82274072 -114921360 + L1MA4 LINE L1 5847 5904 -396 4 1212 378 0 0 0 chr1 82274110 82274152 -114921280 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1212 909 277 100 15 chr1 82275274 82275534 -114919898 + B4A SINE B4 1 282 -10 4 1212 350 21 21 0 chr1 82275535 82275582 -114919850 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1212 622 244 24 48 chr1 82275810 82275978 -114919454 - RSINE1 SINE B4 0 165 2 4 1212 183 203 108 68 chr1 82276587 82276661 -114918771 + L2 LINE L2 2862 2938 -481 4 1212 953 152 7 33 chr1 82277220 82277370 -114918062 + B1_Mur3 SINE Alu 1 146 -3 4 1212 294 29 0 0 chr1 82277372 82277407 -114918025 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1212 405 102 0 0 chr1 82277404 82277463 -114917969 + (GGA)n Simple_repeat Simple_repeat 3 61 0 4 1212 311 260 118 40 chr1 82277463 82277615 -114917817 + L1MEe LINE L1 707 870 -3984 4 1212 286 187 56 0 chr1 82278538 82278627 -114916805 - MIRm SINE MIR -115 153 51 4 1212 201 94 0 0 chr1 82278753 82278785 -114916647 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1212 228 35 0 0 chr1 82280396 82280425 -114915007 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1212 615 27 0 0 chr1 82280913 82280986 -114914446 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1212 240 86 0 0 chr1 82287565 82287600 -114907832 + (TCC)n Simple_repeat Simple_repeat 1 35 0 4 1212 267 79 0 0 chr1 82287665 82287703 -114907729 + (CTG)n Simple_repeat Simple_repeat 3 40 0 4 1212 198 191 0 0 chr1 82287852 82287899 -114907533 + GA-rich Low_complexity Low_complexity 4 50 0 4 1212 278 20 0 73 chr1 82287961 82288016 -114907416 + (TCC)n Simple_repeat Simple_repeat 2 52 0 4 1212 210 91 0 0 chr1 82290526 82290559 -114904873 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1212 215 173 0 19 chr1 82291135 82291188 -114904244 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1212 423 0 0 0 chr1 82291473 82291520 -114903912 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1212 714 274 9 54 chr1 82292408 82292632 -114902800 - B3 SINE B2 0 216 3 4 1212 273 301 123 9 chr1 82292827 82292941 -114902491 - B1F1 SINE Alu -8 141 15 4 1212 369 0 0 0 chr1 82292972 82293013 -114902419 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1212 875 301 182 24 chr1 82293673 82294179 -114901253 + Lx8 LINE L1 6903 7473 0 4 1212 613 316 65 56 chr1 82294350 82294860 -114900572 - MLT1G LTR MaLR -50 541 1 4 1212 1197 49 0 0 chr1 82294872 82295016 -114900416 + B1_Mus1 SINE Alu 2 145 -3 4 1212 290 238 94 47 chr1 82295540 82295646 -114899786 + B1F2 SINE Alu 1 111 -38 4 1212 798 221 40 133 chr1 82296753 82296790 -114898642 + B3 SINE B2 3 31 -185 4 1212 2226 50 7 0 chr1 82296790 82297067 -114898365 + L1_Mus1 LINE L1 6289 6567 0 4 1212 798 221 40 133 chr1 82297067 82297254 -114898178 + B3 SINE B2 32 206 -10 4 1212 618 275 20 0 chr1 82297641 82297790 -114897642 + RSINE1 SINE B4 2 153 -12 4 1212 198 281 113 49 chr1 82298111 82298253 -114897179 + MIR SINE MIR 10 160 -102 4 1212 180 111 0 0 chr1 82298272 82298299 -114897133 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1212 400 248 32 84 chr1 82298418 82298572 -114896860 - MTD LTR MaLR -7 412 267 4 1212 492 18 0 0 chr1 82299439 82299496 -114895936 + (TAAAA)n Simple_repeat Simple_repeat 3 59 0 4 1212 347 264 94 31 chr1 82300764 82300924 -114894508 + L1MA5 LINE L1 5868 6037 -263 4 1212 247 266 0 12 chr1 82300920 82301000 -114894432 + L1MA5 LINE L1 6220 6298 -2 4 1212 411 176 0 0 chr1 82301136 82301210 -114894222 + MER102c DNA MER1_type 258 331 0 4 1212 231 286 143 0 chr1 82301571 82301683 -114893749 + L1MC1 LINE L1 6152 6279 -54 4 1212 714 275 75 4 chr1 82302115 82302367 -114893065 + B4A SINE B4 1 270 -22 4 1212 495 0 0 0 chr1 82302400 82302455 -114892977 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1212 453 143 0 56 chr1 82303472 82303549 -114891883 + B1_Mur3 SINE Alu 65 137 -12 4 1212 363 18 54 0 chr1 82303549 82303605 -114891827 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 4 1212 453 143 0 56 chr1 82303605 82303616 -114891816 + B1_Mur3 SINE Alu 138 148 -1 4 1212 489 84 0 0 chr1 82303626 82303697 -114891735 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1212 1609 207 68 17 chr1 82304030 82304253 -114891179 + ORR1D1 LTR MaLR 1 240 -134 4 1212 264 88 53 0 chr1 82304253 82304310 -114891122 + (CCTG)n Simple_repeat Simple_repeat 3 62 0 4 1212 1609 207 68 17 chr1 82304310 82304440 -114890992 + ORR1D1 LTR MaLR 241 372 -2 4 1212 746 337 49 31 chr1 82305097 82305446 -114889986 + MLT1A0 LTR MaLR 11 365 0 4 1212 230 186 0 23 chr1 82305650 82305694 -114889738 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1212 290 358 20 7 chr1 82305719 82305871 -114889561 - MLT-int LTR MaLR -1214 521 368 4 1212 1054 299 113 10 chr1 82307987 82308395 -114887037 + MTE-int LTR MaLR 1036 1485 -95 4 1212 479 289 0 62 chr1 82308406 82308568 -114886864 + MLT1A0 LTR MaLR 49 200 -165 4 1212 225 254 0 0 chr1 82308588 82308643 -114886789 + RMER6A LTR ERVK 694 748 -8 4 1212 841 300 83 60 chr1 82308655 82309138 -114886294 - MTC-int LTR MaLR -620 638 145 4 1212 297 0 0 0 chr1 82309312 82309345 -114886087 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1212 372 298 69 40 chr1 82309395 82309570 -114885862 + MLT1A0 LTR MaLR 255 434 -33 4 1212 779 80 9 0 chr1 82309614 82309726 -114885706 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 4 1212 297 51 0 0 chr1 82309730 82309769 -114885663 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 4 1212 556 288 81 11 chr1 82310197 82310548 -114884884 - L1M4 LINE L1 -3196 2950 2556 4 1212 249 311 86 21 chr1 82310673 82310860 -114884572 - L1M4 LINE L1 -3641 2505 2307 4 1212 288 0 0 0 chr1 82310863 82310895 -114884537 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1212 210 312 126 21 chr1 82311580 82311675 -114883757 - B1F1 SINE Alu -42 107 3 4 1212 276 309 0 0 chr1 82311608 82311676 -114883756 - ID_B1 SINE B4 -74 150 83 4 1212 485 279 29 7 chr1 82311768 82311905 -114883527 - ID_B1 SINE B4 0 224 85 4 1213 195 42 0 0 chr1 82313767 82313791 -114881641 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1213 345 283 43 34 chr1 82314515 82314632 -114880800 + PB1D7 SINE Alu 11 128 -21 4 1213 214 182 0 0 chr1 82315584 82315628 -114879804 + T-rich Low_complexity Low_complexity 1 44 0 4 1213 423 125 296 0 chr1 82315633 82315721 -114879711 - PB1D9 SINE Alu -6 114 1 4 1213 331 333 63 28 chr1 82320122 82320264 -114875168 + RSINE1 SINE B4 2 148 -17 4 1213 456 19 0 0 chr1 82321421 82321474 -114873958 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1213 633 248 103 0 chr1 82322691 82322742 -114872690 - MTEa LTR MaLR 0 379 327 4 1213 693 0 0 0 chr1 82322742 82322819 -114872613 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 4 1213 633 248 103 0 chr1 82322819 82322981 -114872451 - MTEa LTR MaLR -53 326 146 4 1213 706 52 10 0 chr1 82322976 82323073 -114872359 + ORR1B2 LTR MaLR 262 359 -8 4 1213 279 289 49 16 chr1 82323707 82323830 -114871602 + MLT1A0 LTR MaLR 59 185 -180 4 1213 226 227 0 0 chr1 82324008 82324052 -114871380 + CT-rich Low_complexity Low_complexity 3 46 0 4 1213 543 169 11 12 chr1 82325316 82325438 -114869994 + B1_Mm SINE Alu 26 146 -3 4 1213 21 36 0 0 chr1 82325461 82325489 -114869943 + AT_rich Low_complexity Low_complexity 1 28 0 4 1213 441 0 0 0 chr1 82325929 82325978 -114869454 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1213 291 259 44 44 chr1 82327749 82327767 -114867665 + MT2B LTR ERVL 152 169 -432 4 1213 756 91 30 0 chr1 82327767 82327896 -114867536 + B1_Mus2 SINE Alu 1 150 0 4 1213 281 207 62 96 chr1 82328047 82328146 -114867286 + L1MB7 LINE L1 5567 5659 -515 4 1213 580 294 45 4 chr1 82328319 82328565 -114866867 + L1MB7 LINE L1 5905 6160 -24 4 1213 907 164 137 49 chr1 82330531 82330736 -114864696 + URR1A DNA MER1_type 3 225 -1 4 1213 186 143 0 0 chr1 82331230 82331265 -114864167 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1213 681 234 54 0 chr1 82331407 82331574 -114863858 + Lx8 LINE L1 6637 6812 -661 4 1213 1853 159 3 13 chr1 82331596 82331908 -114863524 - MTC LTR MaLR -2 419 111 4 1213 1104 168 37 23 chr1 82331921 82332135 -114863297 + URR1B DNA MER1_type 7 223 -2 4 1213 614 144 9 43 chr1 82332136 82332252 -114863180 - MTC LTR MaLR -309 112 1 4 1213 4841 178 113 19 chr1 82332253 82333382 -114862050 - MTC-int LTR MaLR -1 1257 23 4 1213 2300 176 10 2 chr1 82333412 82333822 -114861610 - MTC LTR MaLR -8 413 1 4 1213 1079 311 37 35 chr1 82333822 82333949 -114861483 + Lx8 LINE L1 6834 6960 -513 4 1213 1203 204 163 3 chr1 82333949 82334268 -114861164 - ORR1D1 LTR MaLR -4 370 1 4 1213 1079 311 37 35 chr1 82334268 82334597 -114860835 + Lx8 LINE L1 6961 7291 -182 4 1213 21 36 0 0 chr1 82334705 82334733 -114860699 + AT_rich Low_complexity Low_complexity 1 28 0 4 1213 21 57 0 0 chr1 82334993 82335028 -114860404 + AT_rich Low_complexity Low_complexity 1 35 0 4 1213 275 308 119 50 chr1 82336239 82336458 -114858974 - B4 SINE B4 -51 241 8 4 1213 258 292 56 11 chr1 82336511 82336601 -114858831 - RSINE1 SINE B4 0 165 72 4 1213 714 300 45 12 chr1 82337721 82337964 -114857468 - MER70A LTR ERVL 0 472 222 4 1213 401 279 49 8 chr1 82338019 82338142 -114857290 - MER70A LTR ERVL -440 138 11 4 1213 513 264 0 58 chr1 82338195 82338332 -114857100 + B3 SINE B2 6 134 -82 4 1213 257 250 0 100 chr1 82338415 82338495 -114856937 + B3A SINE B2 127 198 0 4 1213 188 194 0 0 chr1 82338689 82338725 -114856707 - MIR SINE MIR -179 83 48 4 1213 260 246 0 0 chr1 82339016 82339073 -114856359 - L1MB5 LINE L1 -19 6155 6099 4 1213 345 47 0 0 chr1 82339522 82339565 -114855867 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1213 240 176 10 20 chr1 82339592 82339652 -114855780 + PB1D7 SINE Alu 69 126 -1 4 1213 386 253 38 0 chr1 82340030 82340147 -114855285 + PB1D10 SINE Alu 2 130 -17 4 1213 481 217 475 10 chr1 82341744 82341944 -114853488 + MTC LTR MaLR 124 416 -5 4 1213 2155 115 148 2 chr1 82342334 82342734 -114852698 + RLTR28 LTR ERVL 1 458 -66 4 1213 249 319 88 15 chr1 82343162 82343299 -114852133 + MLT1G3 LTR MaLR 422 568 -27 4 1213 1643 47 0 0 chr1 82343532 82343725 -114851707 + B2_Mm1a SINE B2 1 193 0 5 1213 1463 70 38 0 chr1 82343734 82343919 -114851513 + B2_Mm2 SINE B2 1 192 -3 5 1213 510 287 48 92 chr1 82345100 82345395 -114850037 - B4A SINE B4 -4 288 7 5 1213 349 257 105 9 chr1 82346017 82346131 -114849301 + B4 SINE B4 14 138 -154 5 1213 378 363 47 55 chr1 82346133 82346407 -114849025 + B4 SINE B4 10 281 -11 5 1213 653 276 44 29 chr1 82346513 82346549 -114848883 + B4A SINE B4 83 118 -174 5 1213 2844 71 52 3 chr1 82346549 82346930 -114848502 + MTB LTR MaLR 1 400 0 5 1213 653 276 44 29 chr1 82346930 82347098 -114848334 + B4A SINE B4 119 290 -2 5 1213 189 0 0 0 chr1 82347175 82347196 -114848236 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1213 180 0 0 0 chr1 82347399 82347419 -114848013 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1213 278 337 92 0 chr1 82347799 82347897 -114847535 - RSINE1 SINE B4 -33 132 26 5 1213 676 204 153 18 chr1 82347937 82347964 -114847468 - B3A SINE B2 0 198 167 5 1213 387 0 0 0 chr1 82347964 82348007 -114847425 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1213 342 0 0 0 chr1 82348007 82348044 -114847388 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1213 676 204 153 18 chr1 82348044 82348185 -114847247 - B3A SINE B2 -32 166 7 5 1213 233 268 40 40 chr1 82348279 82348380 -114847052 - L1MC4a LINE L1 -10 7872 7772 5 1213 340 321 126 38 chr1 82348403 82348625 -114846807 - ORR1E LTR MaLR -9 350 97 5 1213 1179 68 0 0 chr1 82348625 82348772 -114846660 + B1_Mus1 SINE Alu 2 148 0 5 1213 340 321 126 38 chr1 82348772 82348866 -114846566 - ORR1E LTR MaLR -263 96 6 5 1213 301 301 0 10 chr1 82349197 82349301 -114846131 - MLT1A LTR MaLR -216 158 56 5 1213 271 269 134 7 chr1 82351962 82352104 -114843328 + L1ME4a LINE L1 5960 6119 -5 5 1213 3680 70 17 0 chr1 82352318 82352787 -114842645 + L1_Mur1 LINE L1 5298 5774 -112 5 1213 450 218 167 59 chr1 82353264 82353503 -114841929 - Lx9 LINE L1 -1 7643 7379 5 1213 2359 227 109 0 chr1 82353510 82354044 -114841388 + Lx9 LINE L1 6459 7050 -594 5 1213 613 198 8 8 chr1 82354122 82354239 -114841193 + PB1D9 SINE Alu 2 118 -2 5 1213 608 97 0 11 chr1 82354239 82354333 -114841099 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 5 1213 861 236 60 10 chr1 82354391 82354592 -114840840 + B3 SINE B2 2 212 -4 5 1213 225 0 0 0 chr1 82355267 82355292 -114840140 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1213 264 30 0 0 chr1 82356606 82356639 -114838793 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 1213 203 0 0 36 chr1 82356759 82356787 -114838645 + (TTTTTG)n Simple_repeat Simple_repeat 1 27 0 5 1213 652 271 38 11 chr1 82357945 82358128 -114837304 - B3 SINE B2 -28 188 1 5 1213 610 322 24 85 chr1 82359229 82359524 -114835908 + MER20B DNA MER1_type 42 318 -465 5 1213 1221 174 41 12 chr1 82359532 82359776 -114835656 - MTC LTR MaLR -102 319 69 5 1213 234 0 0 0 chr1 82359776 82359802 -114835630 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1213 230 282 186 8 chr1 82359945 82360063 -114835369 + L2c LINE L2 3247 3385 -2 5 1213 1456 191 64 67 chr1 82360263 82360623 -114834809 - ORR1C1 LTR MaLR -8 370 12 5 1213 200 271 0 0 chr1 82361635 82361683 -114833749 + CT-rich Low_complexity Low_complexity 4 51 0 5 1213 194 62 31 0 chr1 82361683 82361715 -114833717 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1213 941 277 11 31 chr1 82361743 82362030 -114833402 + MTE-int LTR MaLR 3 283 -1297 5 1213 495 266 157 22 chr1 82362065 82362288 -114833144 + MTE-int LTR MaLR 1305 1557 -23 5 1213 309 386 10 10 chr1 82362313 82362522 -114832910 - RMER15 LTR ERVL -126 449 241 5 1213 395 248 42 21 chr1 82362985 82363129 -114832303 - MMSAT4 Satellite Satellite 0 168 22 5 1213 507 217 112 9 chr1 82363138 82363254 -114832178 + MTE2b LTR MaLR 1 128 -251 5 1213 509 239 112 0 chr1 82363270 82363404 -114832028 + MTE2b LTR MaLR 231 379 0 5 1213 405 0 0 0 chr1 82366145 82366190 -114829242 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 1213 468 51 0 0 chr1 82366681 82366740 -114828692 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1213 276 30 0 0 chr1 82367654 82367687 -114827745 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1213 355 335 124 0 chr1 82367894 82368136 -114827296 + MLT1A LTR MaLR 8 279 -95 5 1213 1181 208 159 46 chr1 82368164 82368624 -114826808 - RMER4B LTR ERVK -13 453 17 5 1213 253 324 36 9 chr1 82368694 82368806 -114826626 - MER58B DNA MER1_type -2 339 225 5 1213 452 354 9 62 chr1 82368927 82369153 -114826279 + MTEa LTR MaLR 3 216 -163 5 1213 237 65 0 0 chr1 82369390 82369421 -114826011 + (CATA)n Simple_repeat Simple_repeat 2 32 0 5 1213 480 18 0 0 chr1 82369828 82369885 -114825547 + (CTCTG)n Simple_repeat Simple_repeat 3 59 0 5 1213 213 231 0 0 chr1 82370488 82370527 -114824905 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1213 634 242 33 108 chr1 82371025 82371266 -114824166 + B4 SINE B4 1 223 -69 5 1213 793 135 14 28 chr1 82371123 82371268 -114824164 + B1_Mus1 SINE Alu 6 148 0 5 1213 552 77 0 0 chr1 82371279 82371357 -114824075 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1213 301 345 141 29 chr1 82371357 82371518 -114823914 + B4 SINE B4 89 269 -23 5 1213 306 0 0 0 chr1 82371519 82371553 -114823879 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1213 450 53 0 0 chr1 82371857 82371914 -114823518 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 5 1213 455 266 89 51 chr1 82375465 82375679 -114819753 + MTEb LTR MaLR 157 378 -1 5 1213 1480 126 9 22 chr1 82377281 82377509 -114817923 - URR1B DNA MER1_type 0 225 1 5 1213 542 239 106 18 chr1 82377805 82377975 -114817457 - B3 SINE B2 0 216 32 5 1213 25 0 0 0 chr1 82378316 82378341 -114817091 + AT_rich Low_complexity Low_complexity 1 25 0 5 1213 456 51 0 0 chr1 82378952 82379011 -114816421 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1213 238 307 70 9 chr1 82379019 82379134 -114816298 - RSINE1 SINE B4 -43 122 1 5 1213 622 230 44 27 chr1 82379241 82379401 -114816031 - MTD LTR MaLR -8 411 249 5 1213 2587 138 22 159 chr1 82379401 82380187 -114815245 - RMER6A LTR ERVK -1 755 1 5 1213 1120 190 111 0 chr1 82380187 82380413 -114815019 - MTD LTR MaLR -168 251 1 5 1213 396 0 0 0 chr1 82380433 82380477 -114814955 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1213 1401 272 79 26 chr1 82380477 82381034 -114814398 - MTC-int LTR MaLR -37 1221 677 5 1213 884 286 85 7 chr1 82381030 82381301 -114814131 - MTD LTR MaLR -127 292 1 5 1213 279 0 0 0 chr1 82385843 82385874 -114809558 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1213 7727 86 18 5 chr1 82386446 82387516 -114807916 - Lx3_Mus LINE L1 -1 7008 5925 5 1213 6740 61 15 16 chr1 82387513 82388445 -114806987 + Lx3_Mus LINE L1 5003 5929 -1080 5 1213 265 273 40 0 chr1 82388628 82388727 -114806705 + MLT1A1 LTR MaLR 294 396 -12 5 1213 339 164 0 0 chr1 82389003 82389064 -114806368 + T-rich Low_complexity Low_complexity 2 62 0 5 1213 23 0 0 0 chr1 82389153 82389176 -114806256 + AT_rich Low_complexity Low_complexity 1 23 0 5 1213 21 0 0 0 chr1 82390066 82390087 -114805345 + AT_rich Low_complexity Low_complexity 1 21 0 5 1213 236 240 13 39 chr1 82390591 82390669 -114804763 + L1M5 LINE L1 5450 5525 -654 5 1213 291 154 0 0 chr1 82391109 82391174 -114804258 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1213 223 174 0 0 chr1 82391284 82391330 -114804102 + T-rich Low_complexity Low_complexity 1 46 0 5 1213 2203 171 146 23 chr1 82392604 82392690 -114802742 - MT2A LTR ERVL 0 533 455 5 1213 189 0 0 0 chr1 82392690 82392711 -114802721 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1213 2203 171 146 23 chr1 82392711 82393097 -114802335 - MT2A LTR ERVL -79 454 3 5 1213 4366 14 14 0 chr1 82393158 82393644 -114801788 - MT2_Mm LTR ERVL 0 493 1 5 1213 321 0 0 0 chr1 82393644 82393682 -114801750 - MERVL-int LTR ERVL 0 5485 5448 5 1213 374 123 13 40 chr1 82393682 82393758 -114801674 - ORR1A3-int LTR MaLR -1323 640 567 5 1213 49037 15 0 0 chr1 82393758 82399128 -114796304 - MERVL-int LTR ERVL -114 5371 1 5 1213 4474 14 2 0 chr1 82399128 82399620 -114795812 - MT2_Mm LTR ERVL 0 493 1 5 1213 1118 158 112 15 chr1 82399866 82400071 -114795361 - URR1A DNA MER1_type 0 226 2 5 1213 389 206 206 0 chr1 82400101 82400193 -114795239 + PB1D7 SINE Alu 2 112 -8 5 1213 657 294 35 35 chr1 82400546 82400831 -114794601 - MLT1B LTR MaLR -6 384 100 5 1213 405 226 19 9 chr1 82400838 82400945 -114794487 - L1MA8 LINE L1 -20 6271 6164 5 1213 671 289 107 7 chr1 82401011 82401310 -114794122 - L1MA4 LINE L1 -396 5904 5576 5 1213 435 204 459 20 chr1 82401312 82401526 -114793906 - MTE2b LTR MaLR 0 379 72 5 1213 765 113 0 0 chr1 82401597 82401738 -114793694 + (TG)n Simple_repeat Simple_repeat 2 142 0 5 1213 433 323 29 136 chr1 82401828 82402100 -114793332 - B4A SINE B4 -18 274 32 5 1213 577 243 43 137 chr1 82402219 82402802 -114792630 - L1MA4 LINE L1 -850 5441 4926 5 1213 207 0 0 0 chr1 82402919 82402942 -114792490 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1213 726 230 0 0 chr1 82403804 82403952 -114791480 - B1_Mur1 SINE Alu -1 148 1 5 1213 808 212 104 38 chr1 82404953 82405164 -114790268 + URR1B DNA MER1_type 1 225 0 5 1213 292 324 133 16 chr1 82405514 82405702 -114789730 - MLT1B LTR MaLR -174 216 7 5 1213 180 0 0 0 chr1 82405896 82405916 -114789516 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1213 280 333 0 0 chr1 82406601 82406694 -114788738 - ID_B1 SINE B4 -50 174 82 5 1213 338 330 6 11 chr1 82409619 82409778 -114785654 + MLT1B LTR MaLR 268 467 0 5 1213 210 118 0 0 chr1 82410845 82410879 -114784553 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1213 214 246 49 0 chr1 82411089 82411150 -114784282 - MER5A DNA MER1_type -59 130 67 5 1213 313 302 119 82 chr1 82412156 82412484 -114782948 - MLT2C1 LTR ERVL 0 397 58 5 1213 1140 68 7 0 chr1 82412866 82413012 -114782420 + B1_Mus2 SINE Alu 1 147 0 5 1213 222 37 0 0 chr1 82413012 82413039 -114782393 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1213 359 277 23 29 chr1 82413393 82413564 -114781868 + MER121 Unknown Unknown 103 272 -140 5 1213 332 287 77 62 chr1 82414554 82414869 -114780563 - ORSL-2a DNA Tip100 -15 327 25 6 1213 276 100 0 0 chr1 82415014 82415054 -114780378 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6 1213 425 256 0 0 chr1 82415115 82415205 -114780227 + PB1D10 SINE Alu 13 102 -15 6 1213 3329 53 2 0 chr1 82415646 82416041 -114779391 + MTA_Mm LTR MaLR 1 396 0 6 1213 4479 14 2 0 chr1 82417690 82418182 -114777250 - MT2_Mm LTR ERVL 0 493 1 6 1213 321 0 0 0 chr1 82418182 82418220 -114777212 - MERVL-int LTR ERVL 0 5485 5448 6 1213 362 167 46 35 chr1 82418220 82418307 -114777125 - ORR1A3-int LTR MaLR -1323 640 553 6 1213 48484 14 6 0 chr1 82418307 82423633 -114771799 - MERVL-int LTR ERVL -125 5360 1 6 1213 3757 16 123 0 chr1 82423633 82424072 -114771360 - MT2_Mm LTR ERVL 0 493 1 6 1213 515 208 135 8 chr1 82426062 82426188 -114769244 - B1_Mur1 SINE Alu -6 143 2 6 1213 206 167 23 23 chr1 82426489 82426532 -114768900 + GA-rich Low_complexity Low_complexity 1 43 0 6 1213 231 309 198 24 chr1 82428349 82428561 -114766871 - MLT1A LTR MaLR -125 249 1 6 1213 706 235 63 24 chr1 82429005 82429210 -114766222 + B3 SINE B2 1 213 -3 6 1213 364 296 48 92 chr1 82429353 82429625 -114765807 + ORR1E LTR MaLR 97 356 -3 6 1213 614 267 14 76 chr1 82430535 82430746 -114764686 + B3A SINE B2 1 198 0 6 1213 470 258 148 14 chr1 82430961 82431177 -114764255 + L1MD3 LINE L1 7658 7902 -93 6 1213 180 250 56 42 chr1 82433293 82433364 -114762068 + MIRm SINE MIR 89 160 -116 6 1213 731 204 215 0 chr1 82435205 82435377 -114760055 + B3 SINE B2 1 209 -7 6 1213 529 196 76 7 chr1 82435641 82435785 -114759647 - URR1A DNA MER1_type -9 217 64 6 1213 321 89 0 0 chr1 82437067 82437112 -114758320 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 6 1213 723 180 13 86 chr1 82440860 82441012 -114754420 + B1F2 SINE Alu 3 143 -6 6 1213 254 260 159 125 chr1 82443266 82443295 -114752137 - B3 SINE B2 -34 182 153 6 1213 531 0 0 0 chr1 82443295 82443354 -114752078 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1213 269 260 159 125 chr1 82443354 82443500 -114751932 - B3A SINE B2 -44 154 1 6 1213 447 311 105 6 chr1 82443511 82443692 -114751740 - B4A SINE B4 -66 226 28 6 1214 861 229 70 94 chr1 82444379 82444612 -114750820 + B4 SINE B4 1 232 -60 6 1214 1538 171 89 56 chr1 82444612 82445040 -114750392 + RMER10A LTR ERVL 1 442 0 6 1214 861 229 70 94 chr1 82445040 82445105 -114750327 + B4 SINE B4 233 292 0 6 1214 22 0 0 0 chr1 82447587 82447609 -114747823 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 311 264 106 58 chr1 82447887 82448076 -114747356 - B3A SINE B2 0 198 1 6 1214 540 0 0 0 chr1 82449500 82449560 -114745872 + (GGA)n Simple_repeat Simple_repeat 2 61 0 6 1214 262 242 28 112 chr1 82451855 82451962 -114743470 + MT2B LTR ERVL 163 260 -341 6 1214 799 161 29 14 chr1 82451867 82452006 -114743426 + B1_Mur1 SINE Alu 9 149 0 6 1214 235 350 26 0 chr1 82452725 82452842 -114742590 + MER2 DNA MER2_type 83 202 -143 6 1214 352 282 112 23 chr1 82452833 82453047 -114742385 + B4A SINE B4 57 289 -3 6 1214 865 152 21 0 chr1 82453918 82454063 -114741369 - B1_Mus1 SINE Alu 0 148 1 6 1214 426 266 114 35 chr1 82454592 82454882 -114740550 + MLT1B LTR MaLR 20 383 -7 6 1214 292 270 0 39 chr1 82455210 82455287 -114740145 - B3A SINE B2 -75 123 50 6 1214 651 26 0 0 chr1 82455302 82455379 -114740053 + (CTTG)n Simple_repeat Simple_repeat 3 79 0 6 1214 392 137 134 21 chr1 82455379 82455466 -114739966 - B1_Mur3 SINE Alu -10 139 41 6 1214 182 290 148 9 chr1 82455841 82455949 -114739483 + MER5A DNA MER1_type 17 139 -50 6 1214 287 292 0 53 chr1 82456196 82456290 -114739142 + L1M5 LINE L1 5767 5855 -269 6 1214 318 26 0 0 chr1 82456469 82456508 -114738924 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1214 673 290 26 67 chr1 82456538 82456808 -114738624 - B4A SINE B4 -7 285 27 6 1214 652 135 117 16 chr1 82456817 82456945 -114738487 + B1_Mur3 SINE Alu 9 149 0 6 1214 1249 68 6 6 chr1 82456969 82457147 -114738285 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 1214 593 61 0 12 chr1 82457149 82457232 -114738200 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 6 1214 273 119 0 0 chr1 82457319 82457361 -114738071 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1214 436 302 69 44 chr1 82457407 82457611 -114737821 + MER20 DNA MER1_type 6 214 -5 6 1214 270 0 0 0 chr1 82458283 82458313 -114737119 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 1214 387 0 0 0 chr1 82458467 82458510 -114736922 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1214 270 327 40 0 chr1 82459550 82459651 -114735781 - MER5A DNA MER1_type -80 109 5 6 1214 217 121 69 0 chr1 82460034 82460092 -114735340 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 6 1214 483 100 0 0 chr1 82460126 82460196 -114735236 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1214 198 0 0 0 chr1 82460664 82460686 -114734746 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 6 1214 268 273 58 83 chr1 82460726 82460846 -114734586 - PB1D7 SINE Alu 0 120 4 6 1214 234 0 0 0 chr1 82460846 82460872 -114734560 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1214 184 77 25 25 chr1 82461108 82461148 -114734284 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1214 808 233 59 0 chr1 82461167 82461369 -114734063 - B3 SINE B2 0 216 3 6 1214 320 276 91 10 chr1 82461387 82461486 -114733946 - PB1D7 SINE Alu -7 113 7 6 1214 273 331 103 22 chr1 82463739 82463875 -114731557 - RSINE1 SINE B4 -17 148 2 6 1214 234 0 0 0 chr1 82464259 82464285 -114731147 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1214 2979 58 0 0 chr1 82464360 82464721 -114730711 - L1_Mus4 LINE L1 -343 6293 5933 6 1214 2315 106 0 6 chr1 82464721 82465054 -114730378 + L1_Mus4 LINE L1 6304 6634 -2 6 1214 354 289 131 15 chr1 82465425 82465555 -114729877 - B1F SINE Alu -4 145 1 6 1214 444 307 48 12 chr1 82465670 82465835 -114729597 - ID_B1 SINE B4 -2 222 52 6 1214 452 225 0 14 chr1 82466463 82466603 -114728829 + (TGGA)n Simple_repeat Simple_repeat 1 138 0 6 1214 198 293 0 0 chr1 82466596 82466695 -114728737 + (TGAA)n Simple_repeat Simple_repeat 4 102 0 6 1214 339 261 55 85 chr1 82468547 82468748 -114726684 + B3A SINE B2 4 198 0 6 1214 265 229 14 28 chr1 82472361 82472433 -114722999 + MTD LTR MaLR 12 82 -337 6 1214 1410 68 0 0 chr1 82473874 82474654 -114720778 + (TG)n Simple_repeat Simple_repeat 1 780 0 6 1214 188 143 24 0 chr1 82475747 82475789 -114719643 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 6 1214 241 127 164 0 chr1 82477542 82477597 -114717835 - Lx8 LINE L1 -3 7470 7407 6 1214 216 158 0 0 chr1 82478232 82478289 -114717143 + T-rich Low_complexity Low_complexity 1 57 0 6 1214 399 255 29 10 chr1 82478301 82478404 -114717028 - 7SK RNA RNA -100 231 127 6 1214 240 306 20 30 chr1 82478450 82478551 -114716881 + MT2A LTR ERVL 361 460 -73 6 1214 373 66 33 0 chr1 82478569 82478630 -114716802 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 6 1214 279 0 0 0 chr1 82479312 82479343 -114716089 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1214 342 98 0 0 chr1 82479730 82479781 -114715651 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1214 1162 62 7 0 chr1 82479781 82479927 -114715505 - B1_Mus1 SINE Alu 0 148 2 6 1214 1621 160 33 14 chr1 82479929 82480236 -114715196 + MTD LTR MaLR 108 405 -14 6 1214 297 0 0 0 chr1 82481092 82481125 -114714307 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1214 311 268 0 12 chr1 82481592 82481675 -114713757 + MER58B DNA MER1_type 252 333 -8 6 1214 185 254 32 48 chr1 82483465 82483527 -114711905 - MIR3 SINE MIR -43 165 105 6 1214 264 336 50 96 chr1 82485113 82485353 -114710079 + MER58B DNA MER1_type 91 319 -22 6 1214 758 192 14 9 chr1 82486754 82487094 -114708338 + GA-rich Low_complexity Low_complexity 1 341 0 6 1214 404 215 159 0 chr1 82487512 82487619 -114707813 + MLT1A1 LTR MaLR 264 387 -21 6 1214 358 302 65 32 chr1 82487673 82487827 -114707605 + LTR40c LTR ERVL 19 177 -288 6 1214 401 225 232 9 chr1 82489468 82489580 -114705852 - RSINE1 SINE B4 -27 138 2 6 1214 397 257 19 83 chr1 82489606 82489763 -114705669 - B1F1 SINE Alu -1 148 2 6 1214 1086 154 6 0 chr1 82490323 82490505 -114704927 + MTC LTR MaLR 184 366 -55 6 1214 323 204 155 0 chr1 82491590 82491693 -114703739 - Lx7 LINE L1 0 7696 7578 6 1214 445 290 72 8 chr1 82491694 82491819 -114703613 - B4A SINE B4 -111 181 49 6 1214 22 0 0 0 chr1 82493407 82493429 -114702003 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 682 239 34 11 chr1 82495883 82496061 -114699371 + B3 SINE B2 1 182 -34 6 1214 421 298 48 75 chr1 82497272 82497606 -114697826 + L2 LINE L2 2349 2673 -746 6 1214 2852 42 0 3 chr1 82497613 82497951 -114697481 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1214 16618 41 25 19 chr1 82497951 82500000 -114695432 + IAPEz-int LTR ERVK 8 2070 -4411 6 1214 10019 16 0 1 chr1 82500000 82501096 -114694336 + IAPEz-int LTR ERVK 2071 3165 -3316 1 1214 10178 22 1 4 chr1 82501085 82502226 -114693206 + IAPEz-int LTR ERVK 5345 6481 0 1 1214 2852 42 0 3 chr1 82502226 82502564 -114692868 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1214 1038 159 0 0 chr1 82502750 82503082 -114692350 + (TG)n Simple_repeat Simple_repeat 1 332 0 2 1214 263 303 0 22 chr1 82503262 82503353 -114692079 + L2a LINE L2 3338 3426 0 3 1214 2635 246 98 32 chr1 82504633 82505543 -114689889 + RCHARR1 DNA MER1_type 5 974 0 4 1214 454 216 16 0 chr1 82505967 82506092 -114689340 + CT-rich Low_complexity Low_complexity 2 128 0 5 1214 22 0 0 0 chr1 82506493 82506515 -114688917 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 33615 112 32 27 chr1 82506987 82508732 -114686700 + L1Md_F2 LINE L1 217 1966 -3917 7 1214 237 33 0 0 chr1 82508732 82508762 -114686670 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 1214 33615 64 6 6 chr1 82508762 82512381 -114683051 + L1Md_F2 LINE L1 1967 5585 -298 7 1214 7539 76 7 5 chr1 82512382 82513375 -114682057 + L1Md_F2 LINE L1 5588 6582 0 7 1214 339 258 11 0 chr1 82513381 82513474 -114681958 + HAL1 LINE L1 1553 1646 -861 9 1214 818 262 62 23 chr1 82513553 82513906 -114681526 + Lx8 LINE L1 5644 5972 -1501 1 1214 255 61 0 0 chr1 82513915 82513948 -114681484 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 1 1214 964 95 23 0 chr1 82513994 82514171 -114681261 + URR1B DNA MER1_type 31 225 0 1 1214 26 0 0 0 chr1 82514346 82514372 -114681060 + AT_rich Low_complexity Low_complexity 1 26 0 1 1214 975 137 7 0 chr1 82514482 82514628 -114680804 + B1_Mus1 SINE Alu 2 148 0 1 1214 243 0 0 0 chr1 82514759 82514786 -114680646 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1214 492 32 0 0 chr1 82514786 82514847 -114680585 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1214 492 306 54 29 chr1 82515759 82516035 -114679397 + L1MA9 LINE L1 5857 6139 -173 1 1214 248 232 0 0 chr1 82516049 82516105 -114679327 - L1_Rod LINE L1 -17 5830 5775 1 1214 506 226 45 33 chr1 82516106 82516314 -114679118 - L1M2 LINE L1 -1526 4617 4393 1 1214 429 157 0 0 chr1 82516314 82516397 -114679035 - Lx4A LINE L1 0 7058 6976 2 1214 247 204 74 0 chr1 82516618 82516672 -114678760 + B1F1 SINE Alu 37 94 -55 2 1214 832 179 7 0 chr1 82516826 82516977 -114678455 + B3A SINE B2 1 152 -46 2 1214 915 43 0 0 chr1 82516981 82517097 -114678335 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1214 296 269 12 29 chr1 82517539 82517665 -114677767 - MIR SINE MIR -77 199 74 2 1214 264 231 0 44 chr1 82518054 82518082 -114677350 + MTEb-int LTR MaLR 625 646 -863 2 1214 881 86 58 0 chr1 82518082 82518221 -114677211 + B1_Mus1 SINE Alu 1 147 -1 2 1214 1044 218 91 4 chr1 82518434 82518697 -114676735 - B4 SINE B4 -3 289 4 2 1214 522 0 0 0 chr1 82519573 82519631 -114675801 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1214 1576 234 83 36 chr1 82519832 82520325 -114675107 + RLTR17 LTR ERVK 105 620 -72 2 1214 234 337 89 0 chr1 82520864 82520965 -114674467 + MTEb LTR MaLR 1 110 -249 2 1214 831 165 14 14 chr1 82520967 82521108 -114674324 + B1_Mur4 SINE Alu 2 142 -8 3 1214 532 182 15 0 chr1 82521114 82521251 -114674181 + GA-rich Low_complexity Low_complexity 2 140 0 3 1214 245 157 410 0 chr1 82521351 82521434 -114673998 + MTEb LTR MaLR 259 375 -4 2 1214 867 172 164 45 chr1 82522668 82522869 -114672563 - URR1B DNA MER1_type 0 225 1 3 1214 526 216 20 118 chr1 82522896 82523048 -114672384 + ID_B1 SINE B4 82 218 -6 3 1214 270 343 0 10 chr1 82523057 82523157 -114672275 + B3A SINE B2 1 99 -99 3 1214 282 195 55 25 chr1 82523222 82523385 -114672047 + (TA)n Simple_repeat Simple_repeat 1 168 0 3 1214 1995 109 138 12 chr1 82523435 82523761 -114671671 + ORR1B2 LTR MaLR 1 367 0 3 1214 427 282 83 90 chr1 82523762 82523918 -114671514 + RSINE1 SINE B4 8 162 -3 3 1214 207 0 0 0 chr1 82525475 82525498 -114669934 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1214 248 288 96 0 chr1 82526604 82526677 -114668755 + B1F1 SINE Alu 17 96 -53 3 1214 574 261 7 40 chr1 82527171 82527319 -114668113 - ID_B1 SINE B4 -2 222 80 4 1214 831 288 59 19 chr1 82528323 82528645 -114666787 + L1MA4 LINE L1 5916 6250 -50 4 1214 656 302 59 32 chr1 82528695 82528948 -114666484 - B4 SINE B4 -1 291 32 4 1214 2110 111 98 3 chr1 82529101 82529417 -114666015 - ORR1A1 LTR MaLR 0 346 1 4 1214 189 74 0 0 chr1 82529558 82529585 -114665847 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1214 252 0 0 0 chr1 82529686 82529714 -114665718 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1214 842 231 60 20 chr1 82529940 82530139 -114665293 - B3 SINE B2 -3 213 7 4 1214 477 0 0 0 chr1 82530788 82530841 -114664591 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1214 1181 144 114 0 chr1 82531556 82531757 -114663675 + URR1A DNA MER1_type 1 224 -2 4 1214 409 226 101 39 chr1 82532818 82532947 -114662485 - B1_Mur1 SINE Alu -8 141 5 4 1214 403 240 38 9 chr1 82533432 82533537 -114661895 + Tigger6a DNA MER2_type 146 253 -830 5 1214 596 255 29 102 chr1 82533818 82534063 -114661369 + Tigger6a DNA MER2_type 252 478 -605 5 1214 789 275 65 25 chr1 82534120 82534474 -114660958 + Tigger6a DNA MER2_type 680 1047 -36 5 1214 207 0 0 0 chr1 82534941 82534964 -114660468 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 5 1214 88 60 0 0 chr1 82534970 82535121 -114660311 + AT_rich Low_complexity Low_complexity 1 151 0 5 1214 410 0 20 0 chr1 82536291 82536341 -114659091 + (TTTTC)n Simple_repeat Simple_repeat 4 54 0 5 1214 297 276 11 22 chr1 82536367 82536456 -114658976 - B1_Mus1 SINE Alu -51 97 10 5 1214 235 240 0 40 chr1 82538076 82538176 -114657256 + (TATG)n Simple_repeat Simple_repeat 3 98 0 5 1214 996 114 0 7 chr1 82538801 82538942 -114656490 + B1_Mur4 SINE Alu 1 140 -10 5 1214 333 0 0 0 chr1 82538943 82538980 -114656452 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1214 443 274 124 46 chr1 82539041 82539194 -114656238 - RSINE1 SINE B4 0 165 1 5 1214 231 342 86 43 chr1 82539377 82539493 -114655939 - FordPrefect DNA Tip100 -1253 430 310 5 1214 274 297 95 0 chr1 82541694 82541768 -114653664 + ID4_ SINE ID 2 82 -1 6 1214 211 211 0 0 chr1 82541768 82541820 -114653612 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 1214 261 0 0 0 chr1 82542911 82542940 -114652492 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1214 352 251 150 72 chr1 82543612 82543672 -114651760 + B4 SINE B4 2 68 -224 6 1214 2417 38 7 3 chr1 82543672 82543965 -114651467 - L1Md_F2 LINE L1 -4 6578 6285 6 1214 352 251 150 72 chr1 82543965 82544097 -114651335 + B4 SINE B4 69 209 -83 6 1214 573 42 0 0 chr1 82544172 82544244 -114651188 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1214 380 145 84 0 chr1 82544266 82544349 -114651083 + L1Md_A LINE L1 6471 6560 -22 6 1214 33828 4 0 0 chr1 82544337 82548094 -114647338 + L1Md_A LINE L1 1829 5586 -297 6 1214 9216 2 0 0 chr1 82548094 82549090 -114646342 + L1Md_A LINE L1 5587 6582 0 6 1214 25 0 0 0 chr1 82549116 82549141 -114646291 + AT_rich Low_complexity Low_complexity 1 25 0 6 1214 198 0 0 0 chr1 82549218 82549240 -114646192 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1214 216 0 0 0 chr1 82549716 82549740 -114645692 + (CAG)n Simple_repeat Simple_repeat 1 24 0 7 1214 245 194 19 10 chr1 82549740 82549814 -114645618 - PB1D7 SINE Alu -6 114 42 7 1214 2638 66 12 0 chr1 82550136 82550470 -114644962 + L1_Mus1 LINE L1 6229 6566 -1 7 1214 230 346 29 22 chr1 82550608 82550744 -114644688 - MIRc SINE MIR -118 150 14 7 1214 4752 174 54 2 chr1 82554246 82555091 -114640341 + Lx5 LINE L1 6159 7047 -3 7 1214 240 306 28 0 chr1 82556085 82556157 -114639275 + Lx8 LINE L1 6214 6287 -1186 7 1214 324 354 39 22 chr1 82556161 82556343 -114639089 + Lx8 LINE L1 7144 7328 -145 7 1214 211 333 0 14 chr1 82556375 82556417 -114639015 + polypurine Low_complexity Low_complexity 1 42 0 7 1214 1147 97 6 6 chr1 82556417 82556594 -114638838 + (GGA)n Simple_repeat Simple_repeat 1 177 0 7 1214 211 333 0 14 chr1 82556594 82556621 -114638811 + polypurine Low_complexity Low_complexity 43 68 0 7 1214 277 328 60 0 chr1 82557464 82557598 -114637834 - MER20 DNA MER1_type -25 194 53 7 1214 475 328 74 62 chr1 82557802 82558111 -114637321 + MLT1A LTR MaLR 6 318 -56 8 1214 2230 157 48 15 chr1 82558122 82558516 -114636916 + MTB_Mm LTR MaLR 1 407 0 8 1214 3499 61 2 2 chr1 82558601 82559042 -114636390 - L1_Mus1 LINE L1 -1 6566 6126 8 1214 255 186 122 47 chr1 82559582 82559689 -114635743 + MER103 DNA DNA 7 121 -45 8 1214 373 211 22 11 chr1 82560187 82560278 -114635154 - PB1D10 SINE Alu -2 115 24 8 1214 991 143 122 5 chr1 82560744 82560941 -114634491 + URR1A DNA MER1_type 1 220 -6 8 1214 1011 152 0 32 chr1 82561036 82561488 -114633944 + (CA)n Simple_repeat Simple_repeat 1 437 0 8 1214 770 150 0 32 chr1 82561488 82561674 -114633758 + (CATA)n Simple_repeat Simple_repeat 1 180 0 8 1214 453 228 0 0 chr1 82561674 82561775 -114633657 + (CA)n Simple_repeat Simple_repeat 1 101 0 8 1214 273 231 0 44 chr1 82562154 82562222 -114633210 + ID_B1 SINE B4 105 169 -55 8 1214 251 253 67 33 chr1 82562222 82562244 -114633188 + PB1D10 SINE Alu 24 116 -1 9 1214 268 206 27 27 chr1 82562244 82562319 -114633113 + GA-rich Low_complexity Low_complexity 1 75 0 9 1214 2308 121 48 14 chr1 82562536 82562889 -114632543 + ORR1B2 LTR MaLR 3 367 0 9 1214 802 310 20 40 chr1 82562988 82563284 -114632148 + B4A SINE B4 1 290 -2 9 1214 438 36 0 0 chr1 82563726 82563782 -114631650 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 9 1214 1121 72 0 0 chr1 82563782 82563920 -114631512 - B1_Mus2 SINE Alu -8 139 2 9 1214 509 276 61 66 chr1 82563929 82564127 -114631305 + B4 SINE B4 57 253 -39 9 1214 351 0 0 0 chr1 82564193 82564232 -114631200 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1214 202 254 15 73 chr1 82564349 82564485 -114630947 + (CA)n Simple_repeat Simple_repeat 2 129 0 9 1214 1708 28 4 69 chr1 82565298 82565530 -114629902 + L1Md_F2 LINE L1 6364 6580 -2 9 1214 757 277 97 65 chr1 82567277 82567659 -114627773 - MLT1D LTR MaLR -104 401 8 1 1214 969 226 34 0 chr1 82568450 82568658 -114626774 - B3 SINE B2 0 216 2 1 1214 510 290 204 8 chr1 82568775 82569143 -114626289 + L1MB7 LINE L1 5698 6137 -47 1 1214 524 257 44 0 chr1 82570071 82570207 -114625225 - B4 SINE B4 -8 284 143 1 1214 961 245 60 112 chr1 82570231 82570631 -114624801 - MTE2a LTR MaLR 0 379 1 1 1214 807 127 27 40 chr1 82570644 82570792 -114624640 + L1_Mus2 LINE L1 6420 6565 -1 1 1214 405 0 0 0 chr1 82571896 82571941 -114623491 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1214 873 249 20 0 chr1 82572819 82573016 -114622416 + B3 SINE B2 5 205 -11 1 1214 739 278 14 19 chr1 82573153 82573362 -114622070 + ID_B1 SINE B4 2 209 -15 1 1214 677 110 9 0 chr1 82573367 82573476 -114621956 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 1 1214 585 262 12 42 chr1 82573539 82573706 -114621726 + RSINE1 SINE B4 4 165 0 1 1214 267 227 0 0 chr1 82573708 82573774 -114621658 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1214 258 293 124 69 chr1 82573833 82574247 -114621185 - L1MA6 LINE L1 -17 6283 5843 1 1214 351 0 0 0 chr1 82574281 82574320 -114621112 + (CCA)n Simple_repeat Simple_repeat 3 41 0 1 1214 198 0 0 0 chr1 82574340 82574362 -114621070 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1215 453 81 0 0 chr1 82575438 82575500 -114619932 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1215 315 177 0 0 chr1 82575651 82575713 -114619719 + (TTAG)n Simple_repeat Simple_repeat 1 62 0 1 1215 398 297 0 0 chr1 82575713 82575814 -114619618 - PB1 SINE Alu -3 124 24 1 1215 210 239 22 0 chr1 82576051 82576097 -114619335 + CT-rich Low_complexity Low_complexity 2 48 0 1 1215 414 0 0 0 chr1 82576419 82576465 -114618967 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1215 486 237 29 37 chr1 82576882 82577018 -114618414 + RSINE1 SINE B4 12 146 -19 1 1215 1327 72 33 16 chr1 82577214 82577397 -114618035 + B2_Mm2 SINE B2 4 189 -6 1 1215 25 0 0 0 chr1 82577857 82577882 -114617550 + AT_rich Low_complexity Low_complexity 1 25 0 1 1215 489 296 79 36 chr1 82577921 82578201 -114617231 - B4A SINE B4 0 292 1 1 1215 488 254 90 51 chr1 82578736 82578914 -114616518 + B4A SINE B4 27 211 -81 1 1215 5047 72 9 1 chr1 82578914 82579568 -114615864 - L1Md_F2 LINE L1 -2 6580 5922 1 1215 2521 34 0 0 chr1 82579569 82579860 -114615572 + L1Md_F2 LINE L1 5646 5936 -646 1 1215 3260 59 2 15 chr1 82580163 82580575 -114614857 - MTB_Mm LTR MaLR 0 407 1 1 1215 225 260 52 52 chr1 82580756 82580890 -114614542 - MER5A1 DNA MER1_type -5 161 28 1 1215 335 301 37 43 chr1 82581412 82581575 -114613857 + B4A SINE B4 4 165 -127 1 1215 351 0 0 0 chr1 82581621 82581660 -114613772 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1215 251 302 23 11 chr1 82582225 82582312 -114613120 - MER5B DNA MER1_type -80 98 11 1 1215 735 101 33 13 chr1 82584417 82584568 -114610864 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 1 1215 189 0 0 0 chr1 82585871 82585892 -114609540 + (CAT)n Simple_repeat Simple_repeat 2 22 0 1 1215 813 235 70 0 chr1 82585965 82586165 -114609267 + B3 SINE B2 1 214 -2 1 1215 234 0 0 0 chr1 82588992 82589018 -114606414 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1215 249 33 0 0 chr1 82589018 82589047 -114606385 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1215 384 22 0 0 chr1 82589050 82589095 -114606337 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1215 823 245 133 12 chr1 82589122 82589370 -114606062 - B4A SINE B4 -14 278 1 1 1215 1263 27 0 13 chr1 82590526 82590675 -114604757 - B1_Mm SINE Alu 0 147 1 1 1215 367 263 21 83 chr1 82590817 82590962 -114604470 - B1F SINE Alu -11 138 3 1 1215 1179 108 13 5 chr1 82591081 82591828 -114603604 + (TTTC)n Simple_repeat Simple_repeat 1 752 0 1 1215 428 285 66 7 chr1 82591847 82591999 -114603433 - RSINE1 SINE B4 -4 161 1 1 1215 234 196 0 0 chr1 82592577 82592628 -114602804 - L1MEd LINE L1 -5092 1027 977 1 1215 897 314 52 6 chr1 82593180 82593510 -114601922 + MLT1A0 LTR MaLR 16 360 -5 1 1215 274 309 47 31 chr1 82594553 82594680 -114600752 - MLT1A0 LTR MaLR -58 307 179 1 1215 272 259 122 35 chr1 82595429 82595601 -114599831 - MER33 DNA MER1_type -125 199 13 1 1215 1089 211 39 0 chr1 82596277 82596485 -114598947 + B3 SINE B2 1 216 0 1 1215 351 230 0 0 chr1 82596520 82596607 -114598825 + (TA)n Simple_repeat Simple_repeat 2 88 0 1 1215 2326 178 14 12 chr1 82596841 82597261 -114598171 + MTC LTR MaLR 1 421 0 1 1215 726 317 20 41 chr1 82597950 82598243 -114597189 + B4 SINE B4 2 288 -4 1 1215 405 39 0 0 chr1 82598255 82598306 -114597126 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1215 253 277 3 17 chr1 82599847 82599947 -114595485 + MIRm SINE MIR 85 179 -89 1 1215 468 274 22 113 chr1 82600392 82600622 -114594810 + B4A SINE B4 1 209 -83 1 1215 412 163 4 84 chr1 82600711 82600969 -114594463 + (CA)n Simple_repeat Simple_repeat 1 237 0 1 1215 1163 254 73 57 chr1 82602974 82603387 -114592045 + MTD LTR MaLR 6 401 -18 1 1215 308 250 75 0 chr1 82603787 82603867 -114591565 + B3A SINE B2 4 89 -109 1 1215 403 243 19 10 chr1 82603856 82603960 -114591472 + ID_B1 SINE B4 118 222 -2 1 1215 209 57 29 0 chr1 82605826 82605861 -114589571 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1215 347 284 28 0 chr1 82605910 82606019 -114589413 - B4A SINE B4 -55 237 126 1 1215 6058 75 38 6 chr1 82606057 82606877 -114588555 - L1_Mus4 LINE L1 -4 6632 5787 1 1215 3628 88 14 0 chr1 82606877 82607366 -114588066 + L1_Mus4 LINE L1 5322 5817 -66 1 1215 215 298 0 0 chr1 82607372 82607419 -114588013 - B4A SINE B4 -207 85 39 1 1215 528 59 0 0 chr1 82607440 82607508 -114587924 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1215 25 51 0 0 chr1 82608064 82608103 -114587329 + AT_rich Low_complexity Low_complexity 1 39 0 1 1215 485 282 28 14 chr1 82608202 82608346 -114587086 - RSINE1 SINE B4 -17 148 3 1 1215 304 319 26 0 chr1 82608402 82608515 -114586917 - PB1D10 SINE Alu 0 117 2 1 1215 304 235 0 29 chr1 82609709 82609779 -114585653 + ID4 SINE ID 2 69 -14 1 1215 345 309 31 0 chr1 82609870 82609967 -114585465 + PB1D10 SINE Alu 2 101 -16 1 1215 864 127 0 0 chr1 82610801 82610943 -114584489 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1215 1110 243 39 57 chr1 82610951 82611109 -114584323 + MTEa LTR MaLR 6 169 -210 1 1215 287 65 22 0 chr1 82611109 82611155 -114584277 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1215 1110 243 39 57 chr1 82611155 82611332 -114584100 + MTEa LTR MaLR 170 335 -44 1 1215 252 0 0 0 chr1 82612638 82612666 -114582766 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1215 927 27 0 0 chr1 82612666 82612775 -114582657 + (GA)n Simple_repeat Simple_repeat 2 111 0 1 1215 849 230 35 20 chr1 82613262 82613462 -114581970 - ID_B1 SINE B4 -20 204 2 1 1215 530 122 28 9 chr1 82615722 82615768 -114579664 + polypyrimidine Low_complexity Low_complexity 65 110 0 1 1215 1038 122 0 16 chr1 82615768 82615951 -114579481 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1215 530 122 28 9 chr1 82615951 82616012 -114579420 + polypyrimidine Low_complexity Low_complexity 1 64 0 1 1215 279 297 55 0 chr1 82616165 82616256 -114579176 + PB1 SINE Alu 3 98 -29 1 1215 371 264 24 47 chr1 82616262 82616389 -114579043 + MTE2a LTR MaLR 247 370 -9 1 1215 8341 79 9 1 chr1 82617159 82618654 -114576778 - L1_Mus3 LINE L1 0 6638 5131 1 1215 9312 117 1 1 chr1 82618653 82620019 -114575413 + L1_Mm LINE L1 3835 5200 -683 1 1215 750 311 9 5 chr1 82620131 82620354 -114575078 - ID_B1 SINE B4 0 224 1 1 1215 230 396 40 0 chr1 82620515 82620616 -114574816 + PB1D10 SINE Alu 1 105 -12 1 1215 457 223 0 15 chr1 82620726 82620858 -114574574 + GA-rich Low_complexity Low_complexity 3 132 0 1 1215 683 250 92 41 chr1 82620858 82621129 -114574303 + Lx8 LINE L1 7186 7470 -3 1 1215 201 263 0 17 chr1 82621158 82621216 -114574216 + GA-rich Low_complexity Low_complexity 3 59 0 1 1215 525 58 0 0 chr1 82622387 82622456 -114572976 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1215 576 282 21 0 chr1 82622460 82622602 -114572830 - RSINE1 SINE B4 -18 147 3 1 1215 1069 97 50 22 chr1 82623116 82623295 -114572137 - B2_Mm2 SINE B2 -8 187 4 1 1215 270 95 0 0 chr1 82624251 82624293 -114571139 + (GGTTG)n Simple_repeat Simple_repeat 2 43 0 1 1215 416 135 0 13 chr1 82624926 82625001 -114570431 + (TCTCCC)n Simple_repeat Simple_repeat 4 77 0 1 1215 882 19 0 0 chr1 82625504 82625608 -114569824 + (TG)n Simple_repeat Simple_repeat 2 105 0 1 1215 575 288 13 0 chr1 82626909 82627062 -114568370 + ID_B1 SINE B4 32 186 -38 1 1215 297 0 0 0 chr1 82627074 82627107 -114568325 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1215 1909 299 33 46 chr1 82628093 82628794 -114566638 - Lx8 LINE L1 -249 7224 6533 1 1215 594 280 122 33 chr1 82628797 82628978 -114566454 + RMER30 DNA MER1_type 5 201 -1 1 1215 749 318 81 52 chr1 82629464 82630198 -114565234 + L1MA4 LINE L1 5377 6141 -1332 1 1215 3583 138 60 21 chr1 82630218 82630839 -114564593 + Lx LINE L1 5996 6640 -14 1 1215 37 39 0 0 chr1 82630839 82630890 -114564542 + AT_rich Low_complexity Low_complexity 1 51 0 1 1215 682 115 0 0 chr1 82631587 82631691 -114563741 + 5S rRNA rRNA 14 117 -4 1 1215 198 0 0 0 chr1 82631693 82631715 -114563717 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1215 702 261 22 0 chr1 82631793 82631973 -114563459 - B3A SINE B2 -14 184 1 1 1215 21 0 0 0 chr1 82632103 82632124 -114563308 + GC_rich Low_complexity Low_complexity 1 21 0 2 1215 1684 201 9 13 chr1 82632448 82632765 -114562667 - Lx5 LINE L1 0 7050 6735 2 1215 22 0 0 0 chr1 82632788 82632810 -114562622 + AT_rich Low_complexity Low_complexity 1 22 0 2 1215 667 169 0 0 chr1 82633211 82633335 -114562097 - Lx9 LINE L1 -1 7643 7520 2 1215 26 50 0 0 chr1 82634624 82634664 -114560768 + AT_rich Low_complexity Low_complexity 1 40 0 2 1215 537 318 47 6 chr1 82634762 82634933 -114560499 + B3A SINE B2 5 182 -16 2 1215 1077 122 35 74 chr1 82635068 82635271 -114560161 + B2_Mm2 SINE B2 1 195 0 2 1215 315 0 0 0 chr1 82635380 82635415 -114560017 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 2 1215 1356 28 17 0 chr1 82636038 82636215 -114559217 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1215 287 288 29 9 chr1 82636494 82636599 -114558833 - MER5A DNA MER1_type -39 150 44 2 1215 968 94 65 0 chr1 82637293 82637431 -114558001 - B1_Mus1 SINE Alu 0 148 2 2 1215 378 94 0 0 chr1 82637590 82637654 -114557778 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1215 249 33 0 0 chr1 82637654 82637684 -114557748 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1215 251 221 29 14 chr1 82637688 82637757 -114557675 + MADE2 DNA Mariner 5 74 -6 2 1215 249 33 0 0 chr1 82638713 82638743 -114556689 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1215 271 167 15 15 chr1 82639060 82639127 -114556305 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1215 1142 69 0 27 chr1 82641300 82641449 -114553983 + B1_Mus1 SINE Alu 4 148 0 2 1215 208 135 0 0 chr1 82641450 82641487 -114553945 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1215 811 252 48 40 chr1 82641781 82642033 -114553399 + B4A SINE B4 39 292 0 2 1215 486 0 0 0 chr1 82642173 82642227 -114553205 + (TTA)n Simple_repeat Simple_repeat 1 54 0 2 1215 8228 56 1 1 chr1 82642227 82643430 -114552002 - L1_Mus1 LINE L1 -10 6557 5356 2 1215 590 171 57 9 chr1 82643430 82643536 -114551896 - PB1D9 SINE Alu -8 112 2 2 1215 4136 92 0 6 chr1 82643536 82643553 -114551879 - L1_Mus1 LINE L1 -528 5355 5339 2 1215 201 113 55 36 chr1 82644062 82644076 -114551356 + A-rich Low_complexity Low_complexity 1 14 0 2 1215 955 92 0 54 chr1 82644076 82644260 -114551172 + (GGAGA)n Simple_repeat Simple_repeat 5 178 0 2 1215 968 149 10 16 chr1 82644260 82644483 -114550949 + A-rich Low_complexity Low_complexity 1 221 0 2 1215 273 165 20 133 chr1 82644890 82644988 -114550444 - MER5A1 DNA MER1_type -79 87 1 2 1215 580 217 8 73 chr1 82645505 82645629 -114549803 + PB1D7 SINE Alu 4 119 -1 2 1215 326 284 0 97 chr1 82645849 82645962 -114549470 + RSINE1 SINE B4 64 165 0 2 1215 229 286 35 99 chr1 82645995 82646135 -114549297 + B1F SINE Alu 16 149 0 2 1215 663 201 0 0 chr1 82646394 82646573 -114548859 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1215 208 211 39 0 chr1 82646575 82646627 -114548805 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 2 1215 435 83 0 0 chr1 82648013 82648073 -114547359 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1215 263 280 134 42 chr1 82648264 82648525 -114546907 - L2 LINE L2 -1217 2202 1918 2 1215 237 43 64 0 chr1 82649070 82649117 -114546315 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 1215 1081 58 22 0 chr1 82649117 82649256 -114546176 - B1_Mur4 SINE Alu -7 143 2 2 1215 525 16 0 0 chr1 82649476 82649538 -114545894 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1215 405 123 0 0 chr1 82650009 82650074 -114545358 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 2 1215 1164 75 0 20 chr1 82652817 82652967 -114542465 + B1_Mus1 SINE Alu 2 148 0 2 1215 293 140 18 0 chr1 82652988 82653045 -114542387 + GA-rich Low_complexity Low_complexity 2 59 0 2 1215 213 121 0 0 chr1 82653062 82653095 -114542337 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 2 1215 3708 126 34 12 chr1 82653879 82654443 -114540989 - Lx2 LINE L1 0 6997 6422 2 1215 277 311 54 7 chr1 82654887 82655036 -114540396 - L1MB7 LINE L1 -9 6175 6020 2 1215 1370 55 38 22 chr1 82655239 82655424 -114540008 + B2_Mm2 SINE B2 2 189 -6 2 1215 30 45 0 0 chr1 82655699 82655743 -114539689 + AT_rich Low_complexity Low_complexity 1 44 0 2 1215 558 0 0 0 chr1 82656265 82656327 -114539105 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 1215 356 256 24 59 chr1 82656929 82657099 -114538333 - Lx8 LINE L1 0 7473 7310 2 1215 297 0 0 0 chr1 82657555 82657588 -114537844 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1215 342 0 0 0 chr1 82657829 82657867 -114537565 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1215 603 27 0 0 chr1 82658477 82658550 -114536882 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 1215 621 298 125 3 chr1 82658951 82659247 -114536185 + L1MA6 LINE L1 5893 6224 -76 2 1215 663 245 7 7 chr1 82659917 82660065 -114535367 - RSINE1 SINE B4 -15 150 3 2 1215 550 331 32 0 chr1 82661898 82662055 -114533377 + B3A SINE B2 3 164 -34 2 1215 492 48 0 0 chr1 82662056 82662119 -114533313 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1215 928 240 30 0 chr1 82662126 82662326 -114533106 + B3 SINE B2 4 209 -7 2 1215 300 247 78 0 chr1 82662748 82662825 -114532607 + ID2 SINE ID 1 83 0 2 1215 21 36 0 0 chr1 82662830 82662858 -114532574 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 896 174 0 0 chr1 82663866 82664010 -114531422 - B1_Mus2 SINE Alu -1 146 3 2 1215 3536 63 0 13 chr1 82664375 82664838 -114530594 + L1Md_F2 LINE L1 6124 6580 -2 2 1215 425 289 31 46 chr1 82665101 82665297 -114530135 - LTR83 LTR ERVL -437 343 151 2 1215 324 197 0 123 chr1 82666047 82666128 -114529304 - ID4_ SINE ID -11 72 2 2 1215 201 94 0 0 chr1 82666142 82666174 -114529258 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1215 219 23 0 85 chr1 82666169 82666216 -114529216 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1215 302 317 72 59 chr1 82668154 82668375 -114527057 + L1MB8 LINE L1 5953 6176 -2 2 1215 21 0 0 0 chr1 82668621 82668642 -114526790 + AT_rich Low_complexity Low_complexity 1 21 0 2 1215 366 293 50 0 chr1 82668694 82668793 -114526639 + PB1D7 SINE Alu 10 113 -7 2 1215 205 232 29 0 chr1 82668977 82669046 -114526386 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1215 638 286 75 0 chr1 82669645 82669844 -114525588 + ID_B1 SINE B4 11 224 0 2 1215 525 71 0 0 chr1 82669845 82669915 -114525517 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1215 306 0 0 0 chr1 82670328 82670362 -114525070 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1215 607 305 82 76 chr1 82671448 82671764 -114523668 + MER58B DNA MER1_type 1 318 -23 2 1215 335 333 54 30 chr1 82671982 82672149 -114523283 - MIRb SINE MIR -95 173 3 2 1215 297 0 0 0 chr1 82672927 82672960 -114522472 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1215 629 250 8 0 chr1 82673575 82673699 -114521733 - RSINE1 SINE B4 -36 129 5 2 1215 22 0 0 0 chr1 82673712 82673734 -114521698 + AT_rich Low_complexity Low_complexity 1 22 0 2 1215 629 285 24 58 chr1 82674043 82674248 -114521184 + B3A SINE B2 1 198 0 2 1215 405 161 24 12 chr1 82674795 82674877 -114520555 - Lx9 LINE L1 -537 7107 7025 2 1215 237 132 0 0 chr1 82674880 82674918 -114520514 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1215 246 116 0 0 chr1 82677500 82677543 -114517889 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1215 1299 21 7 0 chr1 82677544 82677688 -114517744 - B1_Mus2 SINE Alu -1 146 2 2 1215 570 256 126 36 chr1 82677847 82678094 -114517338 - L1M4 LINE L1 -2395 3751 3483 2 1215 693 191 146 21 chr1 82678094 82678238 -114517194 + B3A SINE B2 1 162 -36 2 1215 180 152 0 0 chr1 82678520 82678553 -114516879 + A-rich Low_complexity Low_complexity 1 33 0 2 1215 353 22 22 0 chr1 82679540 82679586 -114515846 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1215 27 62 0 0 chr1 82679590 82679638 -114515794 + AT_rich Low_complexity Low_complexity 1 48 0 2 1215 391 328 9 34 chr1 82679712 82679952 -114515480 + L1MA4A LINE L1 5656 5896 -407 2 1215 2653 170 24 24 chr1 82679962 82680461 -114514971 - RLTR11A2 LTR ERVK 0 527 29 2 1215 551 274 0 0 chr1 82680729 82680831 -114514601 + PB1D10 SINE Alu 1 102 -15 2 1215 2586 91 0 3 chr1 82681172 82681537 -114513895 - L1_Mm LINE L1 -1665 4218 3855 2 1215 1932 92 8 8 chr1 82681537 82681800 -114513632 - L1Md_F2 LINE L1 -12 6570 6308 2 1215 369 0 0 0 chr1 82682127 82682168 -114513264 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1215 485 223 18 9 chr1 82682197 82682310 -114513122 + B1_Mur1 SINE Alu 36 149 0 2 1215 582 224 64 0 chr1 82682666 82682791 -114512641 - B1F SINE Alu -6 143 11 2 1215 1459 192 149 0 chr1 82683369 82683691 -114511741 - MTD LTR MaLR -35 384 15 2 1215 673 277 23 73 chr1 82683699 82683960 -114511472 + Lx8 LINE L1 7223 7470 -3 2 1215 331 242 84 0 chr1 82684162 82684257 -114511175 - MER58C DNA MER1_type -30 185 83 2 1215 192 333 121 6 chr1 82684676 82684833 -114510599 + L2c LINE L2 3174 3348 -39 2 1215 360 254 0 0 chr1 82685273 82685344 -114510088 - ID4 SINE ID -1 82 12 2 1215 587 95 21 0 chr1 82686707 82686802 -114508630 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2 1215 489 51 0 0 chr1 82686802 82686861 -114508571 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1215 333 0 0 0 chr1 82687379 82687416 -114508016 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2 1215 219 69 0 0 chr1 82687419 82687448 -114507984 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1215 3991 52 0 4 chr1 82687669 82688134 -114507298 - L1Md_F2 LINE L1 -12 6570 6108 3 1215 880 149 112 17 chr1 82688492 82688670 -114506762 - B2_Mm2 SINE B2 0 195 1 3 1215 342 248 118 45 chr1 82688894 82689004 -114506428 + ID_B1 SINE B4 99 216 -8 3 1215 217 245 98 203 chr1 82689004 82689017 -114506415 + PB1 SINE Alu 18 127 0 3 1215 226 269 91 32 chr1 82689576 82689667 -114505765 + L2b LINE L2 3220 3357 -69 3 1215 271 337 11 21 chr1 82689710 82689804 -114505628 + MER45A DNA Tip100 69 161 -17 3 1215 3410 154 135 29 chr1 82690124 82690505 -114504927 - RMER6A LTR ERVK -1 755 330 3 1215 524 15 15 0 chr1 82690505 82690570 -114504862 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1215 1449 101 16 0 chr1 82690575 82690763 -114504669 - B2_Mm2 SINE B2 -4 191 1 3 1215 3410 154 135 29 chr1 82690763 82691058 -114504374 - RMER6A LTR ERVK -430 326 2 3 1215 391 282 107 19 chr1 82691386 82691545 -114503887 - MLT1B LTR MaLR -24 366 194 3 1215 264 59 0 0 chr1 82691629 82691663 -114503769 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1215 720 213 36 61 chr1 82691663 82691828 -114503604 - RSINE1 SINE B4 -3 162 2 3 1215 340 330 0 0 chr1 82691830 82691927 -114503505 - MLT1B LTR MaLR -290 100 4 3 1215 323 292 14 0 chr1 82692035 82692107 -114503325 + ID4_ SINE ID 3 75 -8 3 1215 24 32 0 0 chr1 82692123 82692154 -114503278 + AT_rich Low_complexity Low_complexity 1 31 0 3 1215 1309 86 6 33 chr1 82692155 82692335 -114503097 - B2_Mm2 SINE B2 -19 176 2 3 1215 374 227 0 0 chr1 82692501 82692567 -114502865 - RSINE1 SINE B4 -97 68 3 3 1215 235 257 81 0 chr1 82692584 82692658 -114502774 - MLT1B LTR MaLR -295 95 16 3 1215 329 193 28 45 chr1 82693395 82693574 -114501858 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 3 1215 360 186 22 55 chr1 82693585 82693767 -114501665 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 3 1215 231 113 16 31 chr1 82693784 82693848 -114501584 + (TTATA)n Simple_repeat Simple_repeat 2 64 0 3 1215 181 159 36 24 chr1 82693873 82693957 -114501475 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 1215 400 331 18 71 chr1 82693958 82694127 -114501305 - RSINE1 SINE B4 0 165 6 3 1215 188 229 321 0 chr1 82694865 82694974 -114500458 + L4 LINE RTE 234 377 -1652 3 1215 210 308 15 30 chr1 82696461 82696528 -114498904 + B1F1 SINE Alu 17 82 -67 3 1215 479 297 0 0 chr1 82696468 82696586 -114498846 + B4A SINE B4 108 225 -67 3 1215 402 21 0 0 chr1 82697918 82697965 -114497467 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1215 5886 103 39 4 chr1 82699633 82701023 -114494409 + L1Md_F LINE L1 169 1661 -4225 3 1215 13058 17 4 0 chr1 82701017 82702487 -114492945 + L1_Mm LINE L1 4117 5586 -297 3 1215 8944 35 2 0 chr1 82702487 82703481 -114491951 + L1Md_T LINE L1 5587 6582 0 3 1215 598 227 61 30 chr1 82703497 82703629 -114491803 + B3A SINE B2 4 139 -59 3 1215 510 17 0 0 chr1 82703657 82703716 -114491716 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1215 22 0 0 0 chr1 82705077 82705099 -114490333 + AT_rich Low_complexity Low_complexity 1 22 0 3 1215 253 321 0 0 chr1 82705702 82705755 -114489677 - ID SINE ID -146 78 26 3 1215 656 275 0 0 chr1 82705807 82705938 -114489494 + B1F2 SINE Alu 4 134 -15 3 1216 273 253 272 11 chr1 82706658 82706750 -114488682 - PB1D10 SINE Alu 0 117 2 3 1216 947 158 0 7 chr1 82706831 82706978 -114488454 - B1_Mur2 SINE Alu -2 147 2 3 1216 225 0 0 0 chr1 82707791 82707816 -114487616 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 1216 372 306 63 58 chr1 82710348 82710606 -114484826 - ORR1E LTR MaLR -111 259 1 3 1216 219 69 0 0 chr1 82711185 82711214 -114484218 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1216 21 0 0 0 chr1 82711242 82711263 -114484169 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 285 228 105 32 chr1 82711267 82711362 -114484070 - MTEa LTR MaLR 0 379 278 3 1216 409 161 50 70 chr1 82711573 82711673 -114483759 - MTEa LTR MaLR -281 98 1 3 1216 689 241 143 11 chr1 82713130 82713319 -114482113 + ID_B1 SINE B4 1 214 -10 3 1216 769 225 53 0 chr1 82713401 82713552 -114481880 + RSINE1 SINE B4 7 165 0 3 1216 231 112 36 36 chr1 82713552 82713635 -114481797 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 1216 24 32 0 0 chr1 82713640 82713671 -114481761 + AT_rich Low_complexity Low_complexity 1 31 0 3 1216 21 0 0 0 chr1 82714092 82714113 -114481319 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 1189 87 0 23 chr1 82714921 82715098 -114480334 + L1Md_F2 LINE L1 6407 6579 -3 3 1216 234 0 0 0 chr1 82715482 82715508 -114479924 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1216 470 273 103 14 chr1 82716837 82716982 -114478450 + B3A SINE B2 3 160 -38 3 1216 259 312 12 0 chr1 82717571 82717651 -114477781 - PB1D7 SINE Alu 0 120 40 3 1216 506 264 155 32 chr1 82718028 82718235 -114477197 + B3A SINE B2 3 216 0 3 1216 34 65 0 0 chr1 82718357 82718419 -114477013 + AT_rich Low_complexity Low_complexity 1 62 0 3 1216 27 29 0 0 chr1 82718493 82718527 -114476905 + AT_rich Low_complexity Low_complexity 1 34 0 3 1216 865 174 38 67 chr1 82719406 82719616 -114475816 - RMER10B LTR ERVL 0 398 195 3 1216 289 254 14 0 chr1 82719781 82719852 -114475580 + MER34 LTR ERV1 8 79 -508 3 1216 506 289 63 22 chr1 82719852 82720075 -114475357 + MER34 LTR ERV1 309 540 -2 3 1216 420 265 107 13 chr1 82720358 82720507 -114474925 - MER2 DNA MER2_type -19 326 164 3 1216 1263 83 65 0 chr1 82720550 82720718 -114474714 + B2_Mm1t SINE B2 1 179 -14 3 1216 346 300 0 65 chr1 82720790 82720897 -114474535 - ID_B1 SINE B4 -39 185 86 3 1216 233 75 0 24 chr1 82722166 82722207 -114473225 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1216 235 266 0 15 chr1 82722765 82722830 -114472602 - L1_Rod LINE L1 -629 5218 5155 3 1216 754 196 109 6 chr1 82723460 82723634 -114471798 - URR1A DNA MER1_type -34 192 1 3 1216 257 0 30 0 chr1 82725236 82725269 -114470163 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1216 397 268 12 0 chr1 82725367 82725449 -114469983 - ID4_ SINE ID 0 83 1 3 1216 235 319 20 41 chr1 82726380 82726527 -114468905 - ID_B1 SINE B4 0 224 81 3 1216 700 286 99 14 chr1 82726629 82726983 -114468449 - L1ME1 LINE L1 -290 5889 5506 3 1216 973 226 72 164 chr1 82727033 82727436 -114467996 - ORR1D2 LTR MaLR -4 366 1 3 1216 195 42 0 0 chr1 82727993 82728017 -114467415 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1216 272 264 47 16 chr1 82728144 82728223 -114467209 - ID4 SINE ID -52 100 20 3 1216 2515 145 50 2 chr1 82728933 82729335 -114466097 + MTC LTR MaLR 1 421 0 3 1216 860 253 92 9 chr1 82730547 82730774 -114464658 - MTD LTR MaLR 0 419 174 3 1216 381 43 0 0 chr1 82730983 82731030 -114464402 + (CAGG)n Simple_repeat Simple_repeat 4 50 0 3 1216 505 225 134 82 chr1 82731271 82731465 -114463967 + MER2 DNA MER2_type 79 282 -63 3 1216 324 239 14 0 chr1 82731678 82731749 -114463683 + B4 SINE B4 3 74 -218 3 1216 408 40 0 0 chr1 82731755 82731805 -114463627 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1216 258 32 0 0 chr1 82734076 82734107 -114461325 + (GTTTG)n Simple_repeat Simple_repeat 3 33 0 3 1216 253 298 136 34 chr1 82734460 82734489 -114460943 + ID_B1 SINE B4 84 213 -11 3 1216 366 250 67 11 chr1 82734489 82734578 -114460854 + B1_Mur1 SINE Alu 45 138 -11 3 1216 245 295 0 25 chr1 82735515 82735595 -114459837 + ID4 SINE ID 5 82 -1 3 1216 22 56 0 0 chr1 82735763 82735799 -114459633 + AT_rich Low_complexity Low_complexity 1 36 0 3 1216 244 155 51 17 chr1 82735969 82736028 -114459404 + CT-rich Low_complexity Low_complexity 1 61 0 3 1216 258 116 0 0 chr1 82736836 82736879 -114458553 + (TATG)n Simple_repeat Simple_repeat 1 43 0 3 1216 363 192 0 0 chr1 82736917 82736990 -114458442 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 3 1216 629 170 52 26 chr1 82737375 82737490 -114457942 + PB1D9 SINE Alu 3 120 0 3 1216 268 280 40 114 chr1 82739737 82739886 -114455546 + MIR3 SINE MIR 12 149 -59 3 1216 21 0 0 0 chr1 82740443 82740464 -114454968 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 251 304 27 73 chr1 82740514 82740533 -114454899 + B4 SINE B4 65 82 -210 3 1216 551 274 8 0 chr1 82740533 82740650 -114454782 + PB1D7 SINE Alu 1 118 -2 3 1216 450 185 21 32 chr1 82740655 82740750 -114454682 + PB1D9 SINE Alu 1 94 -26 3 1216 231 269 44 15 chr1 82742563 82742631 -114452801 + ID4 SINE ID 12 81 -2 3 1216 231 240 0 0 chr1 82742725 82742775 -114452657 + A-rich Low_complexity Low_complexity 1 50 0 3 1216 705 200 72 29 chr1 82743949 82744077 -114451355 + B1_Mur1 SINE Alu 5 139 -10 3 1216 243 0 0 0 chr1 82744077 82744104 -114451328 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 3 1216 1080 267 31 44 chr1 82744855 82745149 -114450283 - B4 SINE B4 0 292 3 3 1216 382 213 27 0 chr1 82745336 82745411 -114450021 - ID4 SINE ID -5 78 2 3 1216 312 246 24 3 chr1 82746036 82746123 -114449309 + B2_Mm2 SINE B2 1 94 -122 3 1216 317 248 99 113 chr1 82746286 82746427 -114449005 + B1F1 SINE Alu 4 142 -7 3 1216 257 273 128 8 chr1 82747287 82747420 -114448012 - Charlie19a DNA Charlie -96 290 142 3 1216 434 178 53 43 chr1 82750001 82750095 -114445337 + RSINE1 SINE B4 67 161 -4 3 1216 1019 142 0 20 chr1 82750282 82750433 -114444999 + B1_Mus1 SINE Alu 1 148 0 3 1216 234 348 42 28 chr1 82750957 82751099 -114444333 - L2b LINE L2 -3 3372 3229 3 1216 877 218 85 10 chr1 82751131 82751330 -114444102 + B3 SINE B2 2 215 -1 4 1216 1401 212 46 84 chr1 82751457 82751849 -114443583 + MTE2a LTR MaLR 3 379 0 4 1216 220 255 0 0 chr1 82752065 82752112 -114443320 + (CGGA)n Simple_repeat Simple_repeat 3 49 0 4 1216 681 231 151 31 chr1 82752374 82752566 -114442866 - B3 SINE B2 0 216 2 4 1216 808 213 30 9 chr1 82752594 82752779 -114442653 - B3A SINE B2 -10 185 2 4 1216 3094 38 72 13 chr1 82752801 82753178 -114442254 + MTB LTR MaLR 2 400 0 4 1216 603 158 58 8 chr1 82753711 82753832 -114441600 - B1_Mm SINE Alu -20 127 1 4 1216 189 0 0 0 chr1 82754614 82754635 -114440797 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1216 423 0 0 0 chr1 82755427 82755474 -114439958 + (ATTG)n Simple_repeat Simple_repeat 3 49 0 4 1216 348 297 102 133 chr1 82755490 82755584 -114439848 + B4A SINE B4 3 90 -202 4 1216 645 120 254 53 chr1 82755584 82755698 -114439734 + B1_Mus1 SINE Alu 1 137 -11 4 1216 348 297 102 133 chr1 82755698 82755859 -114439573 + B4A SINE B4 91 250 -42 4 1216 500 293 50 19 chr1 82755993 82756153 -114439279 + B3A SINE B2 11 175 -23 4 1216 189 0 0 0 chr1 82756158 82756179 -114439253 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1216 920 240 32 42 chr1 82756192 82756409 -114439023 + B3 SINE B2 1 215 -1 4 1216 933 270 20 50 chr1 82757100 82757400 -114438032 - B4A SINE B4 0 292 2 4 1216 326 279 34 117 chr1 82757787 82757966 -114437466 - MER20 DNA MER1_type -49 170 7 4 1216 200 247 141 0 chr1 82758194 82758279 -114437153 - MIR SINE MIR -70 192 96 4 1216 890 206 58 21 chr1 82758928 82759117 -114436315 + B3A SINE B2 2 197 -1 4 1216 906 213 112 0 chr1 82759486 82759674 -114435758 + B3 SINE B2 1 209 -7 4 1216 189 268 67 79 chr1 82759780 82759869 -114435563 + MER5B DNA MER1_type 91 178 0 4 1216 342 0 0 0 chr1 82760053 82760091 -114435341 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1216 1022 138 0 7 chr1 82760124 82760270 -114435162 + B1_Mus2 SINE Alu 2 146 -1 4 1216 212 0 36 0 chr1 82760271 82760299 -114435133 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1216 239 132 57 0 chr1 82760914 82760967 -114434465 + CT-rich Low_complexity Low_complexity 5 60 0 4 1216 732 145 62 31 chr1 82761239 82761367 -114434065 - B1_Mur2 SINE Alu -1 148 17 4 1216 489 200 88 20 chr1 82762263 82762365 -114433067 + MER58A DNA MER1_type 35 143 -81 4 1216 243 0 0 0 chr1 82763789 82763816 -114431616 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1216 363 151 2 79 chr1 82764227 82764305 -114431127 - ORR1D1 LTR MaLR 0 421 312 4 1216 285 358 94 22 chr1 82766344 82766567 -114428865 + MLT1J1 LTR MaLR 81 319 -125 4 1216 202 388 39 10 chr1 82767109 82767213 -114428219 - MIR3 SINE MIR -12 196 90 4 1216 183 227 0 0 chr1 82767474 82767540 -114427892 + (CAG)n Simple_repeat Simple_repeat 1 66 0 4 1216 219 217 0 0 chr1 82767554 82767600 -114427832 + (CAG)n Simple_repeat Simple_repeat 3 48 0 4 1216 237 271 0 0 chr1 82767647 82767791 -114427641 + (CCG)n Simple_repeat Simple_repeat 2 145 0 4 1216 1195 45 0 0 chr1 82768873 82769007 -114426425 - B1_Mm SINE Alu -10 137 4 4 1216 1488 234 158 42 chr1 82769024 82769686 -114425746 - RMER1B Other Other -473 593 69 4 1216 198 0 0 0 chr1 82769941 82769963 -114425469 + (TCCA)n Simple_repeat Simple_repeat 1 22 0 4 1216 366 327 77 18 chr1 82769992 82770266 -114425166 + Zaphod DNA Tip100 502 791 -3240 4 1216 697 245 190 21 chr1 82770287 82770529 -114424903 + B4A SINE B4 1 283 -9 4 1216 2503 216 93 27 chr1 82770898 82771531 -114423901 + RMER19A LTR ERVK 32 706 -31 4 1216 207 0 0 0 chr1 82771531 82771554 -114423878 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1216 1205 95 0 0 chr1 82771554 82771702 -114423730 - B1_Mus1 SINE Alu 0 148 1 4 1216 388 208 0 38 chr1 82772193 82772273 -114423159 + ID4 SINE ID 1 77 -6 4 1216 324 0 0 0 chr1 82772750 82772786 -114422646 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1216 1258 83 6 0 chr1 82772821 82772990 -114422442 + B2_Mm1t SINE B2 2 171 -22 4 1216 23 0 0 0 chr1 82773021 82773044 -114422388 + AT_rich Low_complexity Low_complexity 1 23 0 4 1216 202 283 0 0 chr1 82774176 82774222 -114421210 - L2b LINE L2 -5 3370 3325 4 1216 540 0 0 0 chr1 82774997 82775057 -114420375 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1216 541 216 16 49 chr1 82775539 82775661 -114419771 + B1F1 SINE Alu 2 119 -30 4 1216 189 0 0 0 chr1 82776543 82776564 -114418868 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1216 385 259 18 44 chr1 82776585 82776698 -114418734 - PB1D10 SINE Alu -7 110 1 4 1216 743 176 333 0 chr1 82776877 82777075 -114418357 - MTC LTR MaLR -98 302 48 4 1216 329 119 34 0 chr1 82777075 82777134 -114418298 + T-rich Low_complexity Low_complexity 2 62 0 4 1216 1289 41 0 7 chr1 82777134 82777281 -114418151 - B1_Mus2 SINE Alu 0 147 2 4 1216 375 151 0 131 chr1 82777281 82777365 -114418067 - MTC LTR MaLR -339 82 10 4 1216 508 283 111 7 chr1 82777821 82777974 -114417458 + B3A SINE B2 3 171 -27 4 1216 396 0 0 0 chr1 82777979 82778023 -114417409 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1216 471 222 89 20 chr1 82778060 82778161 -114417271 + PB1D7 SINE Alu 13 120 0 4 1216 243 361 0 0 chr1 82778595 82778667 -114416765 + polypurine Low_complexity Low_complexity 4 75 0 4 1216 239 195 0 0 chr1 82778784 82778825 -114416607 - ID_B1 SINE B4 0 224 184 4 1216 900 185 116 0 chr1 82779491 82779680 -114415752 - B3 SINE B2 -4 212 2 4 1216 489 221 106 8 chr1 82779696 82779828 -114415604 - B1F SINE Alu 0 149 5 4 1216 273 57 0 0 chr1 82779845 82779880 -114415552 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1216 701 296 45 20 chr1 82779883 82780083 -114415349 - ID_B1 SINE B4 -12 212 8 4 1216 305 172 0 15 chr1 82780401 82780466 -114414966 + G-rich Low_complexity Low_complexity 1 64 0 4 1216 764 246 134 45 chr1 82780924 82781192 -114414240 - B4A SINE B4 0 292 1 4 1216 268 310 148 19 chr1 82781192 82781455 -114413977 - L2 LINE L2 -773 2646 2350 4 1216 21 0 0 0 chr1 82781873 82781894 -114413538 + AT_rich Low_complexity Low_complexity 1 21 0 4 1216 645 274 0 0 chr1 82782058 82782193 -114413239 + RSINE1 SINE B4 2 136 -29 4 1216 938 231 32 0 chr1 82782248 82782464 -114412968 + ID_B1 SINE B4 2 224 0 4 1216 283 136 34 0 chr1 82783122 82783181 -114412251 + GA-rich Low_complexity Low_complexity 2 62 0 4 1216 602 85 11 0 chr1 82783181 82783275 -114412157 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 4 1216 321 181 21 11 chr1 82783734 82783829 -114411603 + CT-rich Low_complexity Low_complexity 1 96 0 4 1216 464 254 38 15 chr1 82784478 82784610 -114410822 - ID_B1 SINE B4 0 224 90 4 1216 524 130 11 0 chr1 82785245 82785337 -114410095 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1216 359 264 99 0 chr1 82785517 82785608 -114409824 + Lx8 LINE L1 6783 6882 -591 4 1216 1018 163 108 0 chr1 82785609 82785812 -114409620 + URR1A DNA MER1_type 2 226 0 4 1216 1741 221 56 30 chr1 82785828 82786224 -114409208 - MTD LTR MaLR -2 417 12 4 1216 225 0 0 0 chr1 82786224 82786249 -114409183 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1216 948 326 78 39 chr1 82786399 82786884 -114408548 + Lx8 LINE L1 6961 7464 -9 4 1216 185 35 69 0 chr1 82787120 82787149 -114408283 + (CTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1216 548 216 35 0 chr1 82787149 82787265 -114408167 - ID_B1 SINE B4 -12 212 93 4 1216 1323 82 37 21 chr1 82788213 82788400 -114407032 - B2_Mm2 SINE B2 -4 191 2 4 1216 349 252 70 35 chr1 82788407 82788522 -114406910 - ID_B1 SINE B4 -4 220 102 4 1216 203 189 19 0 chr1 82788640 82788693 -114406739 + (TATG)n Simple_repeat Simple_repeat 4 57 0 4 1216 681 300 64 36 chr1 82788722 82789002 -114406430 - B4A SINE B4 0 292 5 4 1216 691 232 108 18 chr1 82789118 82789285 -114406147 + B3A SINE B2 2 183 -15 4 1216 637 150 20 0 chr1 82789307 82789407 -114406025 + B3A SINE B2 3 104 -94 4 1216 261 211 239 0 chr1 82789574 82789645 -114405787 - B1F SINE Alu -44 105 18 4 1216 265 227 58 0 chr1 82790192 82790261 -114405171 + B1F1 SINE Alu 43 115 -2 4 1216 249 108 0 0 chr1 82791462 82791499 -114403933 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 1216 248 204 74 0 chr1 82791507 82791561 -114403871 - B3 SINE B2 -95 121 64 4 1216 1336 80 11 0 chr1 82791602 82791778 -114403654 - B2_Mm1t SINE B2 -15 178 1 4 1216 21 0 0 0 chr1 82791900 82791921 -114403511 + AT_rich Low_complexity Low_complexity 1 21 0 4 1216 956 264 39 12 chr1 82792261 82792525 -114402907 + MTEb LTR MaLR 106 406 -13 4 1216 237 301 70 63 chr1 82792952 82793094 -114402338 + B1F SINE Alu 6 148 -1 4 1216 448 294 22 139 chr1 82793105 82793350 -114402082 + B3A SINE B2 3 213 -3 4 1216 340 308 13 64 chr1 82793681 82793837 -114401595 - MLT1A1 LTR MaLR 0 408 261 4 1216 568 265 72 14 chr1 82794298 82794436 -114400996 - ID_B1 SINE B4 -10 214 69 4 1216 830 164 29 0 chr1 82794458 82794598 -114400834 - B1_Mus1 SINE Alu 0 148 5 4 1216 245 284 73 73 chr1 82794899 82795009 -114400423 - MIRb SINE MIR -152 116 7 4 1216 407 242 11 0 chr1 82795694 82795785 -114399647 - MER102a DNA MER1_type -165 165 74 4 1216 857 237 126 5 chr1 82795787 82795986 -114399446 - ID_B1 SINE B4 0 224 2 4 1216 220 298 0 0 chr1 82796207 82796254 -114399178 - ID_B1 SINE B4 -78 146 100 4 1216 1107 134 0 0 chr1 82796306 82796485 -114398947 + (TTC)n Simple_repeat Simple_repeat 1 179 0 4 1216 377 214 0 10 chr1 82796485 82796584 -114398848 + CT-rich Low_complexity Low_complexity 3 100 0 5 1216 273 227 27 0 chr1 82796592 82796667 -114398765 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1216 585 293 36 76 chr1 82796709 82796960 -114398472 - B4A SINE B4 -46 246 6 5 1216 247 359 13 0 chr1 82797475 82797553 -114397879 + ID_B1 SINE B4 79 157 -67 5 1216 245 259 156 11 chr1 82797490 82797580 -114397852 + PB1D10 SINE Alu 13 115 -2 5 1216 993 131 0 0 chr1 82797629 82797805 -114397627 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 5 1216 403 294 145 29 chr1 82797891 82798133 -114397299 + LTR50 LTR ERVL 4 273 -522 5 1216 223 302 177 0 chr1 82798497 82798593 -114396839 - L2b LINE L2 -33 3342 3230 5 1216 844 333 49 12 chr1 82798926 82799351 -114396081 + L1MD3 LINE L1 7538 7978 -17 5 1216 330 261 31 78 chr1 82799356 82799485 -114395947 + Tigger13a DNA MER2_type 303 425 -346 5 1216 351 65 0 0 chr1 82799518 82799564 -114395868 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1216 445 221 133 59 chr1 82799564 82799699 -114395733 - RSINE1 SINE B4 -19 146 2 5 1216 261 256 10 91 chr1 82799700 82799799 -114395633 - B4 SINE B4 -199 93 3 5 1216 241 241 19 0 chr1 82800147 82800201 -114395231 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1216 364 272 17 42 chr1 82800307 82800426 -114395006 - B3 SINE B2 -13 203 88 5 1216 338 269 0 63 chr1 82800494 82800650 -114394782 - B3 SINE B2 0 198 2 5 1216 791 271 89 0 chr1 82800650 82800852 -114394580 - B4A SINE B4 -70 222 2 5 1216 337 344 93 16 chr1 82801551 82801734 -114393698 + B3A SINE B2 1 197 -1 5 1216 598 261 81 48 chr1 82801820 82802029 -114393403 + B3 SINE B2 1 216 0 5 1216 527 209 62 18 chr1 82802075 82802187 -114393245 + RSINE1 SINE B4 28 144 -21 5 1216 350 221 0 113 chr1 82802236 82802333 -114393099 + PB1D10 SINE Alu 31 116 -1 5 1216 563 226 55 22 chr1 82802344 82802525 -114392907 - L1MC4 LINE L1 -170 7872 7686 5 1216 413 19 19 0 chr1 82802639 82802693 -114392739 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1216 433 319 17 23 chr1 82802723 82802896 -114392536 - L1MC4 LINE L1 -569 7473 7302 5 1216 600 14 0 0 chr1 82802897 82802966 -114392466 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1216 231 36 0 0 chr1 82804100 82804128 -114391304 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1216 231 61 0 0 chr1 82804128 82804160 -114391272 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1216 553 262 16 8 chr1 82804439 82804566 -114390866 - ID_B1 SINE B4 -15 209 82 5 1216 409 194 35 97 chr1 82804690 82804804 -114390628 + PB1D10 SINE Alu 25 131 -18 5 1216 23 0 0 0 chr1 82804849 82804872 -114390560 + AT_rich Low_complexity Low_complexity 1 23 0 5 1216 283 244 80 44 chr1 82804872 82805009 -114390423 - Lx9 LINE L1 0 7644 7503 5 1216 605 266 57 52 chr1 82806438 82806668 -114388764 + ORR1E LTR MaLR 18 248 -111 5 1216 1140 231 70 60 chr1 82806879 82807262 -114388170 - RMER17C LTR ERVK -5 405 19 5 1216 785 248 0 0 chr1 82807353 82807514 -114387918 - RSINE1 SINE B4 -4 161 1 5 1216 1020 102 7 26 chr1 82807673 82807824 -114387608 + B1_Mur4 SINE Alu 3 150 0 5 1216 4268 90 3 5 chr1 82809014 82809582 -114385850 + RMER2 LTR ERV1 1 567 0 5 1216 244 362 0 0 chr1 82809708 82809802 -114385630 + CT-rich Low_complexity Low_complexity 4 97 0 5 1216 747 229 25 109 chr1 82810047 82810248 -114385184 + B3 SINE B2 24 207 -9 5 1216 253 333 15 15 chr1 82810275 82810342 -114385090 + ID4 SINE ID 2 68 -15 5 1216 180 0 0 0 chr1 82810352 82810372 -114385060 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 5 1216 432 345 24 28 chr1 82810467 82810679 -114384753 - MER20 DNA MER1_type -7 212 2 5 1216 186 43 0 0 chr1 82811417 82811440 -114383992 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1216 370 260 60 0 chr1 82811929 82812029 -114383403 - PB1D7 SINE Alu -12 108 3 5 1216 243 0 0 0 chr1 82812050 82812077 -114383355 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1216 562 106 22 0 chr1 82812077 82812170 -114383262 - B1_Mus1 SINE Alu -13 107 4 5 1216 374 69 17 0 chr1 82812952 82813010 -114382422 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1216 1211 54 0 0 chr1 82813220 82813367 -114382065 + B1_Mus2 SINE Alu 1 147 0 5 1216 189 0 0 0 chr1 82813367 82813388 -114382044 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1216 2630 198 19 12 chr1 82813489 82814005 -114381427 - Lx5 LINE L1 -11 7039 6520 5 1216 217 344 11 0 chr1 82814536 82814626 -114380806 + MIRb SINE MIR 82 172 -96 5 1216 410 265 0 41 chr1 82814636 82814758 -114380674 + PB1D10 SINE Alu 1 117 0 5 1216 822 201 0 0 chr1 82814805 82814944 -114380488 + B1_Mur1 SINE Alu 2 140 -9 5 1216 1209 55 0 0 chr1 82815079 82815225 -114380207 + B1_Mus2 SINE Alu 2 147 0 5 1216 198 0 0 0 chr1 82815225 82815247 -114380185 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1216 906 281 5 0 chr1 82815257 82815467 -114379965 + ID_B1 SINE B4 2 212 -12 5 1216 351 0 0 0 chr1 82815470 82815509 -114379923 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1216 244 323 52 40 chr1 82815611 82815654 -114379778 - B2_Mm2 SINE B2 -18 177 2 5 1216 618 259 15 0 chr1 82815654 82815785 -114379647 - RSINE1 SINE B4 -30 135 3 5 1216 198 0 0 0 chr1 82816675 82816697 -114378735 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1216 3647 178 102 31 chr1 82816938 82817743 -114377689 + RLTR25B LTR ERVK 1 862 -166 5 1216 2089 31 27 0 chr1 82818011 82818269 -114377163 - L1Md_F2 LINE L1 0 6582 6318 5 1216 833 194 25 70 chr1 82818340 82818405 -114377027 + RLTR25B LTR ERVK 913 969 -134 5 1216 461 47 16 0 chr1 82818405 82818469 -114376963 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1216 270 0 0 0 chr1 82818470 82818500 -114376932 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1216 833 194 25 70 chr1 82818500 82818632 -114376800 + RLTR25B LTR ERVK 970 1103 0 5 1216 264 254 29 15 chr1 82819473 82819541 -114375891 - RMER15 LTR ERVL -103 472 404 5 1216 1274 102 11 0 chr1 82819727 82819904 -114375528 - B2_Mm1t SINE B2 -14 179 1 5 1216 602 236 123 12 chr1 82819933 82820096 -114375336 + B3A SINE B2 2 182 -16 5 1216 300 53 0 0 chr1 82820098 82820136 -114375296 + (CATA)n Simple_repeat Simple_repeat 1 38 0 5 1216 840 284 14 39 chr1 82820296 82820575 -114374857 + Lx6 LINE L1 7145 7416 -44 5 1216 1191 81 0 0 chr1 82820615 82820763 -114374669 + B1_Mus1 SINE Alu 1 148 0 5 1216 669 298 63 27 chr1 82820779 82821079 -114374353 + Lx8 LINE L1 7132 7442 -31 5 1216 338 219 113 9 chr1 82821207 82821322 -114374110 + Lx2B LINE L1 6869 6995 -5 5 1216 352 279 28 35 chr1 82821656 82821797 -114373635 - L2a LINE L2 -30 3396 3257 5 1216 975 245 0 0 chr1 82821994 82822194 -114373238 - B3 SINE B2 -16 200 1 5 1216 1009 253 76 76 chr1 82822531 82822835 -114372597 - MTD LTR MaLR -109 310 7 5 1216 542 193 132 0 chr1 82822836 82822950 -114372482 - B1_Mur2 SINE Alu -11 138 10 5 1216 332 243 73 105 chr1 82822844 82822968 -114372464 - MT2B LTR ERVL -326 275 156 5 1216 1230 143 113 0 chr1 82822978 82823181 -114372251 - URR1A DNA MER1_type 0 226 1 5 1216 387 113 0 0 chr1 82823253 82823315 -114372117 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1216 477 0 0 0 chr1 82823843 82823896 -114371536 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1216 23 0 0 0 chr1 82823911 82823934 -114371498 + AT_rich Low_complexity Low_complexity 1 23 0 5 1216 248 52 16 65 chr1 82823941 82824003 -114371429 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1216 1149 75 7 0 chr1 82824008 82824155 -114371277 - B1_Mus1 SINE Alu 0 148 1 5 1216 241 317 59 64 chr1 82824343 82824522 -114370910 - MIR SINE MIR -60 202 27 5 1216 300 53 0 0 chr1 82825247 82825285 -114370147 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1216 1142 282 58 41 chr1 82825530 82825874 -114369558 - MTEa LTR MaLR -8 371 22 5 1216 334 296 77 59 chr1 82825888 82826057 -114369375 + MIR SINE MIR 15 186 -76 5 1216 482 181 0 141 chr1 82826277 82826410 -114369022 - RMER4B LTR ERVK 0 585 472 5 1216 300 176 203 0 chr1 82826410 82826484 -114368948 + B2_Mm2 SINE B2 1 89 -106 5 1216 701 65 271 0 chr1 82826487 82826594 -114368838 + B1_Mus1 SINE Alu 3 138 -10 5 1216 234 81 0 0 chr1 82826594 82826631 -114368801 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 1216 935 243 84 101 chr1 82826702 82826861 -114368571 - RMER4B LTR ERVK -175 410 261 5 1216 1027 198 36 172 chr1 82826861 82827103 -114368329 - RMER17C LTR ERVK -3 407 176 5 1216 723 24 0 0 chr1 82827103 82827188 -114368244 + (GAA)n Simple_repeat Simple_repeat 3 87 0 5 1216 1027 198 36 172 chr1 82827188 82827416 -114368016 - RMER17C LTR ERVK -235 175 1 5 1216 935 243 84 101 chr1 82827416 82827632 -114367800 - RMER4B LTR ERVK -325 260 48 5 1216 184 29 0 103 chr1 82827638 82827677 -114367755 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1216 1115 90 0 7 chr1 82827677 82827816 -114367616 - B1_Mus1 SINE Alu -9 139 1 5 1216 935 243 84 101 chr1 82827816 82827856 -114367576 - RMER4B LTR ERVK -538 47 1 5 1216 333 118 0 0 chr1 82828047 82828098 -114367334 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1216 291 244 12 34 chr1 82829961 82830051 -114365381 + MTEa LTR MaLR 1 88 -282 5 1216 266 125 0 20 chr1 82830051 82830100 -114365332 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 5 1216 1234 237 6 97 chr1 82830112 82830451 -114364981 - ORR1D2 LTR MaLR 0 370 71 5 1216 354 253 11 11 chr1 82830557 82830645 -114364787 - PB1D10 SINE Alu -26 91 4 5 1216 401 298 21 118 chr1 82830702 82830979 -114364453 + MTEa LTR MaLR 99 379 0 5 1216 259 306 20 37 chr1 82831631 82831752 -114363680 - L2a LINE L2 0 3426 3258 5 1216 399 41 0 0 chr1 82831996 82832045 -114363387 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1216 650 289 46 15 chr1 82832248 82832445 -114362987 + ID_B1 SINE B4 1 203 -21 6 1216 303 310 30 44 chr1 82832337 82832472 -114362960 + B1_Mur4 SINE Alu 15 147 -3 6 1216 316 279 130 15 chr1 82832631 82832786 -114362646 + MIRb SINE MIR 34 208 -54 6 1216 492 244 52 30 chr1 82833575 82833710 -114361722 - B1_Mur1 SINE Alu -11 138 1 6 1216 1339 83 56 0 chr1 82833725 82833905 -114361527 - B2_Mm2 SINE B2 -4 191 2 6 1216 560 200 0 8 chr1 82834726 82834852 -114360580 + GA-rich Low_complexity Low_complexity 1 125 0 6 1216 230 279 29 0 chr1 82834868 82834936 -114360496 - ID4_ SINE ID -12 71 2 6 1216 22 0 0 0 chr1 82834938 82834960 -114360472 + AT_rich Low_complexity Low_complexity 1 22 0 6 1216 1199 117 16 16 chr1 82835347 82835538 -114359894 - URR1B DNA MER1_type 0 225 35 6 1216 23 68 0 0 chr1 82836232 82836276 -114359156 + GC_rich Low_complexity Low_complexity 1 44 0 6 1216 22 0 0 0 chr1 82837469 82837491 -114357941 + AT_rich Low_complexity Low_complexity 1 22 0 6 1217 1275 65 59 0 chr1 82837975 82838145 -114357287 - B2_Mm2 SINE B2 -14 181 2 6 1217 919 136 212 11 chr1 82838155 82838334 -114357098 - B3 SINE B2 -1 215 1 6 1217 901 161 0 7 chr1 82838590 82838740 -114356692 - B1_Mur3 SINE Alu 0 149 1 6 1217 322 149 104 0 chr1 82838741 82838808 -114356624 + L1_Mur3 LINE L1 4922 4995 -885 6 1217 566 248 27 27 chr1 82838837 82838986 -114356446 - RSINE1 SINE B4 0 165 17 6 1217 590 280 60 0 chr1 82840516 82840666 -114354766 - ID_B1 SINE B4 -1 223 65 6 1217 412 227 54 18 chr1 82840704 82840816 -114354616 - PB1D10 SINE Alu 0 117 2 6 1217 696 86 0 0 chr1 82841015 82841120 -114354312 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 6 1217 323 268 110 0 chr1 82841132 82841214 -114354218 - PB1D10 SINE Alu -26 91 1 6 1217 623 177 12 151 chr1 82841724 82841890 -114353542 + B1_Mus1 SINE Alu 6 148 0 6 1217 376 77 31 0 chr1 82843022 82843087 -114352345 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1217 232 238 93 23 chr1 82843087 82843173 -114352259 - B4A SINE B4 -15 277 186 6 1217 1007 32 0 0 chr1 82843616 82843739 -114351693 + B1_Mus2 SINE Alu 15 137 -10 6 1217 426 39 0 0 chr1 82843739 82843791 -114351641 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1217 965 162 32 5 chr1 82844179 82844365 -114351067 - B2_Mm2 SINE B2 -1 194 4 6 1217 4998 111 48 11 chr1 82844600 82845441 -114349991 - L1_Mus3 LINE L1 -289 5594 4723 6 1217 6434 74 91 0 chr1 82845442 82846388 -114349044 + L1_Mus3 LINE L1 5599 6630 -8 6 1217 681 47 0 12 chr1 82846388 82846485 -114348947 + B1_Mur4 SINE Alu 53 148 -2 6 1217 690 136 0 19 chr1 82846496 82846601 -114348831 + B2_Mm2 SINE B2 2 104 -91 6 1217 462 270 14 28 chr1 82847000 82847141 -114348291 + ID_B1 SINE B4 86 224 0 6 1217 3587 83 39 4 chr1 82847189 82847698 -114347734 - L1_Mus2 LINE L1 0 6566 6040 6 1217 739 161 57 0 chr1 82848971 82849095 -114346337 - B1_Mur2 SINE Alu -16 133 3 6 1217 443 266 27 60 chr1 82849222 82849406 -114346026 + B3A SINE B2 5 182 -16 6 1217 332 330 25 25 chr1 82849667 82849785 -114345647 - RSINE1 SINE B4 0 165 48 6 1217 410 280 38 59 chr1 82849864 82850025 -114345407 - B3A SINE B2 -16 182 29 6 1217 245 29 29 0 chr1 82850025 82850059 -114345373 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 6 1217 410 280 38 59 chr1 82850059 82850083 -114345349 - B3A SINE B2 -170 28 2 6 1217 250 301 86 0 chr1 82850440 82850533 -114344899 + MER20 DNA MER1_type 115 215 -4 6 1217 1053 61 0 0 chr1 82851097 82851228 -114344204 - B1_Mus1 SINE Alu -16 132 2 6 1217 1060 229 62 78 chr1 82851837 82852032 -114343400 - ORR1C1 LTR MaLR 0 378 189 6 1217 759 94 0 0 chr1 82852032 82852159 -114343273 + (GA)n Simple_repeat Simple_repeat 2 128 0 6 1217 1060 229 62 78 chr1 82852159 82852347 -114343085 - ORR1C1 LTR MaLR -190 188 1 6 1217 23 0 0 0 chr1 82852370 82852393 -114343039 + AT_rich Low_complexity Low_complexity 1 23 0 6 1217 566 256 6 60 chr1 82852397 82852563 -114342869 - RSINE1 SINE B4 -6 159 3 6 1217 667 103 43 37 chr1 82853577 82853700 -114341732 - B1_Mur4 SINE Alu -20 130 1 6 1217 322 311 39 39 chr1 82853592 82853719 -114341713 - ID_B1 SINE B4 -29 195 69 6 1217 685 178 78 0 chr1 82855584 82855713 -114339719 - B1_Mur2 SINE Alu -8 141 3 6 1217 384 260 40 0 chr1 82856024 82856124 -114339308 + ID_B1 SINE B4 100 203 -21 6 1217 428 227 189 9 chr1 82856331 82856442 -114338990 + B3A SINE B2 4 134 -64 6 1217 279 0 0 0 chr1 82856542 82856573 -114338859 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1217 181 308 48 71 chr1 82857816 82857900 -114337532 - L4 LINE RTE -1370 659 578 6 1217 414 243 53 26 chr1 82858480 82858594 -114336838 - PB1D10 SINE Alu 0 117 1 6 1217 726 270 55 0 chr1 82858983 82859183 -114336249 + B4A SINE B4 82 292 0 6 1217 369 43 0 0 chr1 82859567 82859614 -114335818 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1217 217 175 281 0 chr1 82859616 82859673 -114335759 - ID SINE ID -151 73 1 6 1217 277 192 148 42 chr1 82859921 82860057 -114335375 - L1MB1 LINE L1 -319 5993 5825 6 1217 714 193 50 0 chr1 82860112 82860252 -114335180 - B1_Mus1 SINE Alu -1 147 1 6 1217 320 343 65 7 chr1 82860325 82860463 -114334969 - B1F1 SINE Alu -3 146 1 6 1217 978 84 143 0 chr1 82861786 82861940 -114333492 + B2_Mm2 SINE B2 2 177 -18 6 1217 209 33 0 32 chr1 82862288 82862319 -114333113 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1217 701 204 0 22 chr1 82862319 82862454 -114332978 - B1_Mur1 SINE Alu -13 136 5 6 1217 325 245 80 201 chr1 82862492 82862589 -114332843 + ID SINE ID 2 74 -150 6 1217 392 245 27 89 chr1 82862589 82862701 -114332731 + PB1D10 SINE Alu 1 105 -12 6 1217 1032 31 8 0 chr1 82863802 82863930 -114331502 + B1_Mus2 SINE Alu 18 146 -1 6 1217 300 175 0 0 chr1 82863931 82863994 -114331438 + A-rich Low_complexity Low_complexity 1 63 0 6 1217 184 279 100 12 chr1 82864445 82864525 -114330907 - MIR SINE MIR -62 200 114 6 1217 654 13 0 0 chr1 82865343 82865418 -114330014 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 6 1217 333 68 0 0 chr1 82865418 82865462 -114329970 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1217 434 254 34 42 chr1 82865640 82865759 -114329673 - RSINE1 SINE B4 -2 163 46 6 1217 1781 176 91 3 chr1 82865836 82866166 -114329266 - ORR1B2 LTR MaLR -8 359 1 6 1217 505 262 123 16 chr1 82866233 82866477 -114328955 - L1M5 LINE L1 -398 5781 5512 6 1217 5152 63 15 20 chr1 82868901 82869544 -114325888 + L1_Mus2 LINE L1 5886 6537 -29 6 1217 321 82 0 0 chr1 82869544 82869593 -114325839 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 6 1217 1155 36 0 21 chr1 82869593 82869735 -114325697 - B1_Mus1 SINE Alu -8 140 2 6 1217 5152 63 15 20 chr1 82869735 82869775 -114325657 + L1_Mus2 LINE L1 6538 6565 -1 6 1217 835 110 112 31 chr1 82870019 82870179 -114325253 - L1_Mus3 LINE L1 -7 6631 6459 6 1217 281 350 97 0 chr1 82870693 82870796 -114324636 - MIR SINE MIR -133 129 17 6 1217 1122 58 0 0 chr1 82871444 82871582 -114323850 + B1_Mus1 SINE Alu 1 138 -10 6 1217 226 0 0 56 chr1 82871582 82871618 -114323814 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1217 907 149 0 0 chr1 82871653 82871794 -114323638 + B1_Mus1 SINE Alu 1 141 -7 6 1217 283 194 105 53 chr1 82873074 82873150 -114322282 - PB1D10 SINE Alu -13 104 25 6 1217 750 128 96 22 chr1 82873202 82873338 -114322094 - B1_Mus1 SINE Alu -1 147 2 6 1217 24 0 0 0 chr1 82873440 82873464 -114321968 + AT_rich Low_complexity Low_complexity 1 24 0 6 1217 342 0 0 0 chr1 82873479 82873517 -114321915 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1217 733 257 0 14 chr1 82873522 82873660 -114321772 - RSINE1 SINE B4 -24 141 6 6 1217 606 255 128 33 chr1 82873892 82874135 -114321297 - B4A SINE B4 -26 266 1 6 1217 338 307 96 30 chr1 82874366 82874564 -114320868 - L1MC5 LINE L1 -458 7503 7293 6 1217 267 304 11 0 chr1 82874670 82874762 -114320670 - B3 SINE B2 -6 210 118 6 1217 389 239 68 0 chr1 82874841 82874929 -114320503 + B1_Mur1 SINE Alu 40 133 -16 6 1217 831 245 33 9 chr1 82875112 82875322 -114320110 - B3 SINE B2 0 216 2 6 1217 216 246 336 52 chr1 82875593 82875709 -114319723 + B1F1 SINE Alu 1 149 0 6 1217 581 311 100 26 chr1 82875838 82876109 -114319323 + B4A SINE B4 2 292 0 6 1217 243 275 0 111 chr1 82876109 82876199 -114319233 + ID_B1 SINE B4 140 219 -5 6 1217 502 141 0 0 chr1 82876125 82876203 -114319229 + B1_Mur3 SINE Alu 71 148 -1 6 1217 396 340 0 9 chr1 82877721 82877828 -114317604 - PB1D10 SINE Alu -7 110 5 6 1217 301 241 21 103 chr1 82877749 82877846 -114317586 - MT2B2 LTR ERVL -344 240 152 6 1217 663 212 0 0 chr1 82878565 82878711 -114316721 + (TA)n Simple_repeat Simple_repeat 1 146 0 6 1217 242 273 61 0 chr1 82879436 82879502 -114315930 + MIR SINE MIR 192 261 -1 6 1217 490 278 90 63 chr1 82880739 82880962 -114314470 + Charlie1a DNA MER1_type 2 230 -1225 6 1217 1512 154 206 18 chr1 82881024 82881354 -114314078 - ORR1B1 LTR MaLR 0 394 3 6 1217 544 269 34 101 chr1 82881701 82881908 -114313524 + ID_B1 SINE B4 32 224 0 6 1217 750 239 161 24 chr1 82881920 82882255 -114313177 + Charlie1a DNA MER1_type 621 1001 -454 6 1217 21 89 0 0 chr1 82882325 82882381 -114313051 + AT_rich Low_complexity Low_complexity 1 56 0 6 1217 411 235 17 34 chr1 82883184 82883303 -114312129 + PB1D10 SINE Alu 1 117 0 6 1217 33 80 0 0 chr1 82883554 82883629 -114311803 + AT_rich Low_complexity Low_complexity 1 75 0 7 1217 276 280 35 53 chr1 82883636 82883743 -114311689 - BC1_Mm scRNA scRNA -36 116 11 7 1217 390 91 0 0 chr1 82883743 82883798 -114311634 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1217 207 0 0 0 chr1 82884087 82884110 -114311322 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1217 443 248 47 81 chr1 82884114 82884243 -114311189 - B4A SINE B4 -68 224 101 7 1217 513 84 0 0 chr1 82884243 82884314 -114311118 + (CCA)n Simple_repeat Simple_repeat 2 72 0 7 1217 443 248 47 81 chr1 82884314 82884333 -114311099 - B4A SINE B4 -192 100 82 7 1217 695 193 0 21 chr1 82884350 82884493 -114310939 + B1_Mur4 SINE Alu 2 141 -9 7 1217 245 330 36 45 chr1 82884607 82884718 -114310714 + PB1D10 SINE Alu 8 117 0 7 1217 974 32 63 0 chr1 82885221 82885347 -114310085 - B2_Mm2 SINE B2 -60 135 2 7 1217 556 254 72 0 chr1 82885488 82885626 -114309806 - B1_Mur3 SINE Alu -1 148 1 7 1217 407 301 73 8 chr1 82886054 82886178 -114309254 - RSINE1 SINE B4 -29 136 5 7 1217 417 39 0 0 chr1 82886409 82886460 -114308972 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1217 579 231 52 15 chr1 82886508 82886644 -114308788 - B4 SINE B4 -41 251 111 7 1217 939 160 59 6 chr1 82887178 82887348 -114308084 - B2_Mm2 SINE B2 -8 187 9 7 1217 365 0 22 0 chr1 82887415 82887460 -114307972 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1217 261 246 0 0 chr1 82887473 82887530 -114307902 - ID_B1 SINE B4 -36 188 132 7 1217 384 289 101 8 chr1 82887634 82887763 -114307669 - B1_Mur1 SINE Alu -8 141 1 7 1217 996 80 0 0 chr1 82888905 82889030 -114306402 + MMERVK10C-int LTR ERVK 6444 6568 -1013 7 1217 255 202 34 0 chr1 82889308 82889397 -114306035 + (TA)n Simple_repeat Simple_repeat 1 92 0 7 1217 225 154 0 0 chr1 82890992 82891031 -114304401 + CT-rich Low_complexity Low_complexity 2 40 0 7 1217 368 245 179 28 chr1 82894261 82894664 -114300768 - Charlie1b DNA MER1_type -48 475 6 7 1217 356 146 209 22 chr1 82895071 82895162 -114300270 - B1_Mur2 SINE Alu -1 148 41 7 1217 213 226 0 0 chr1 82896655 82896708 -114298724 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1217 1677 139 105 27 chr1 82898784 82899117 -114296315 + ORR1B2 LTR MaLR 1 359 -8 7 1217 298 285 232 16 chr1 82899298 82899423 -114296009 - RSINE1 SINE B4 -11 154 3 7 1217 348 24 0 0 chr1 82901780 82901821 -114293611 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1217 187 203 14 14 chr1 82901828 82901898 -114293534 + (TA)n Simple_repeat Simple_repeat 1 70 0 7 1217 411 73 0 0 chr1 82901951 82902006 -114293426 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1217 561 251 86 21 chr1 82902062 82902249 -114293183 + B3 SINE B2 7 205 -11 7 1217 812 273 42 28 chr1 82903798 82904081 -114291351 - B4A SINE B4 -4 288 2 7 1217 643 133 75 0 chr1 82904213 82904333 -114291099 + RMER20A LTR ERVK 1 129 -387 7 1217 1711 179 54 39 chr1 82904579 82904969 -114290463 + RMER20A LTR ERVK 116 511 -5 7 1217 555 308 87 36 chr1 82904994 82905099 -114290333 - B4A SINE B4 0 292 183 7 1217 953 86 14 0 chr1 82905099 82905239 -114290193 + (TTTC)n Simple_repeat Simple_repeat 1 142 0 7 1217 555 308 87 36 chr1 82905239 82905409 -114290023 - B4A SINE B4 -110 182 3 7 1217 270 0 0 0 chr1 82905808 82905838 -114289594 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1217 537 333 35 15 chr1 82906758 82906957 -114288475 + B4A SINE B4 51 253 -39 7 1217 1578 231 64 10 chr1 82906957 82907347 -114288085 + MTD LTR MaLR 1 411 -8 7 1217 205 105 0 50 chr1 82907597 82907637 -114287795 + CT-rich Low_complexity Low_complexity 3 40 0 7 1217 340 233 136 0 chr1 82907638 82907741 -114287691 - PB1D9 SINE Alu 0 120 4 7 1217 645 25 0 0 chr1 82908065 82908144 -114287288 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 7 1217 300 258 0 0 chr1 82909981 82910132 -114285300 + (TGG)n Simple_repeat Simple_repeat 3 153 0 7 1217 183 217 0 0 chr1 82910180 82910240 -114285192 + (CTG)n Simple_repeat Simple_repeat 1 60 0 7 1217 793 207 14 7 chr1 82911484 82911630 -114283802 + B1_Mus1 SINE Alu 2 148 0 7 1217 702 267 78 10 chr1 82912045 82912249 -114283183 - ID_B1 SINE B4 -4 220 3 7 1217 429 209 18 45 chr1 82912470 82912580 -114282852 - MTE2a LTR MaLR 0 379 273 7 1217 1705 179 37 9 chr1 82912576 82912925 -114282507 - ORR1B2 LTR MaLR -8 359 1 7 1217 278 260 65 0 chr1 82912935 82913012 -114282420 - MTE2a LTR MaLR -104 275 194 7 1217 234 0 0 0 chr1 82913229 82913255 -114282177 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1217 1787 93 70 14 chr1 82913335 82913619 -114281813 - ORR1A2 LTR MaLR -14 313 14 7 1217 387 0 0 0 chr1 82913622 82913665 -114281767 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1217 2545 136 2 17 chr1 82914175 82914585 -114280847 + MTB_Mm LTR MaLR 4 407 0 7 1217 361 297 19 19 chr1 82914855 82914958 -114280474 + PB1D9 SINE Alu 2 104 -16 7 1217 213 196 43 0 chr1 82915069 82915115 -114280317 + CT-rich Low_complexity Low_complexity 3 50 0 7 1217 858 235 48 34 chr1 82915595 82915802 -114279630 + ID_B1 SINE B4 2 211 -13 7 1217 320 351 83 99 chr1 82916785 82917022 -114278410 + B4 SINE B4 39 271 -21 7 1217 2284 147 31 25 chr1 82917022 82917414 -114278018 + ORR1B1 LTR MaLR 1 394 0 7 1217 283 271 0 79 chr1 82917414 82917441 -114277991 + RSINE1 SINE B4 127 148 -17 7 1217 1091 104 103 6 chr1 82918397 82918571 -114276861 + B2_Mm1a SINE B2 1 191 -2 7 1217 1063 108 72 0 chr1 82919233 82919399 -114276033 + B2_Mm1t SINE B2 2 179 -14 7 1217 342 97 398 10 chr1 82919446 82919549 -114275883 + B2_Mm2 SINE B2 47 189 -6 7 1217 232 27 0 51 chr1 82919763 82919802 -114275630 + (TCC)n Simple_repeat Simple_repeat 2 38 0 7 1217 219 125 0 48 chr1 82920062 82920104 -114275328 + A-rich Low_complexity Low_complexity 3 42 0 7 1217 297 376 7 54 chr1 82920170 82920319 -114275113 - B1F SINE Alu -2 147 6 7 1217 1693 103 106 3 chr1 82920382 82920665 -114274767 + ORR1A3 LTR MaLR 1 312 -14 7 1217 228 184 0 0 chr1 82920673 82920722 -114274710 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 7 1217 288 260 0 0 chr1 82921585 82921731 -114273701 + (CGG)n Simple_repeat Simple_repeat 2 147 0 7 1217 340 259 0 26 chr1 82921736 82921851 -114273581 + (CTG)n Simple_repeat Simple_repeat 1 112 0 7 1217 2781 73 78 30 chr1 82923821 82924259 -114271173 + RMER16 LTR ERVK 75 533 0 7 1217 368 393 39 21 chr1 82924378 82924612 -114270820 - MER88 LTR ERVL -166 298 61 7 1217 1261 98 22 0 chr1 82925132 82925316 -114270116 + B2_Mm1t SINE B2 1 188 -5 7 1217 245 128 0 21 chr1 82925944 82925992 -114269440 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 7 1217 419 209 0 19 chr1 82926293 82926449 -114268983 + (TG)n Simple_repeat Simple_repeat 2 154 0 7 1217 201 121 0 0 chr1 82927615 82927648 -114267784 + (CAG)n Simple_repeat Simple_repeat 1 33 0 7 1217 192 261 0 0 chr1 82927705 82927797 -114267635 + (CCA)n Simple_repeat Simple_repeat 2 93 0 7 1217 202 325 0 0 chr1 82927797 82927880 -114267552 + (CAG)n Simple_repeat Simple_repeat 3 85 0 7 1217 1208 63 61 33 chr1 82928557 82928738 -114266694 - B2_Mm2 SINE B2 -9 186 1 7 1217 819 77 0 0 chr1 82929178 82929295 -114266137 - B1_Mm SINE Alu 0 147 31 7 1217 1381 73 0 25 chr1 82929315 82929511 -114265921 + B2_Mm2 SINE B2 3 193 -2 7 1217 879 123 65 0 chr1 82929511 82929648 -114265784 + B1_Mm SINE Alu 1 147 0 7 1217 1626 122 45 33 chr1 82929932 82930381 -114265051 - RLTR1B LTR ERV1 0 624 135 7 1217 2505 271 90 1 chr1 82930468 82931540 -114263892 - MMERGLN-int LTR ERV1 0 7556 6390 7 1217 28465 218 15 14 chr1 82932187 82937812 -114257620 - MMERGLN-int LTR ERV1 -1924 5632 1 7 1217 1999 109 30 85 chr1 82937812 82938212 -114257220 - RLTR1B LTR ERV1 0 512 135 7 1217 261 0 0 0 chr1 82938516 82938545 -114256887 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1217 1042 90 14 0 chr1 82938905 82939049 -114256383 - B1_Mm SINE Alu 0 147 2 7 1217 201 121 0 0 chr1 82939604 82939637 -114255795 + (CAG)n Simple_repeat Simple_repeat 1 33 0 7 1217 186 253 0 0 chr1 82939694 82939777 -114255655 + (CCA)n Simple_repeat Simple_repeat 2 84 0 7 1217 244 315 0 0 chr1 82939777 82939869 -114255563 + (CAG)n Simple_repeat Simple_repeat 3 94 0 7 1217 1229 62 60 33 chr1 82940546 82940728 -114254704 - B2_Mm2 SINE B2 -8 187 1 7 1217 1474 53 0 36 chr1 82941173 82941369 -114254063 + B2_Mm2 SINE B2 3 191 -4 7 1217 997 82 67 0 chr1 82941369 82941504 -114253928 + B1_Mm SINE Alu 4 147 0 7 1217 396 0 0 0 chr1 82941988 82942032 -114253400 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1217 303 267 0 0 chr1 82942929 82943182 -114252250 + (TGG)n Simple_repeat Simple_repeat 1 253 0 7 1217 250 340 0 0 chr1 82943104 82943207 -114252225 + (CTG)n Simple_repeat Simple_repeat 3 105 0 7 1217 183 80 0 0 chr1 82943221 82943246 -114252186 + (CTG)n Simple_repeat Simple_repeat 3 27 0 7 1217 218 193 0 17 chr1 82943388 82943446 -114251986 + (TCTG)n Simple_repeat Simple_repeat 1 57 0 7 1217 253 255 26 97 chr1 82944214 82944327 -114251105 + MTEb LTR MaLR 116 220 -159 7 1217 1658 213 15 3 chr1 82944421 82944764 -114250668 - MTC LTR MaLR -74 347 1 7 1217 304 315 21 91 chr1 82944764 82944907 -114250525 - MLT1B LTR MaLR -257 133 1 7 1217 3989 148 45 12 chr1 82945346 82946016 -114249416 + RLTR17 LTR ERVK 1 692 0 7 1217 1486 209 123 87 chr1 82946016 82946093 -114249339 + RMER3D-int LTR ERVK 1 68 -2774 7 1217 211 28 56 0 chr1 82946093 82946129 -114249303 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1217 1373 83 0 6 chr1 82946133 82946314 -114249118 - B2_Mm2 SINE B2 -14 181 2 7 1217 2824 177 61 46 chr1 82946314 82947221 -114248211 + RMER3D-int LTR ERVK 69 1533 -1309 7 1217 494 143 20 71 chr1 82947253 82947351 -114248081 + RMER3D-int LTR ERVK 1532 1624 -1218 7 1217 1527 329 36 22 chr1 82947525 82948355 -114247077 - MMTV-int LTR ERVK -3925 3328 2487 7 1217 276 30 0 0 chr1 82948879 82948912 -114246520 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1217 1291 256 60 79 chr1 82948980 82949399 -114246033 + Lx8 LINE L1 6658 7068 -405 7 1217 1547 199 78 6 chr1 82949406 82949740 -114245692 + MTD LTR MaLR 62 419 0 7 1217 483 223 0 0 chr1 82949744 82949838 -114245594 - B4A SINE B4 -195 97 4 8 1217 308 188 31 10 chr1 82950952 82951049 -114244383 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 8 1217 397 302 19 90 chr1 82951163 82951365 -114244067 - MTEa LTR MaLR -164 215 33 8 1217 218 193 0 17 chr1 82952058 82952116 -114243316 + (CAGA)n Simple_repeat Simple_repeat 1 57 0 8 1217 216 200 0 0 chr1 82952223 82952283 -114243149 + (CAG)n Simple_repeat Simple_repeat 1 60 0 8 1217 306 274 0 0 chr1 82952322 82952501 -114242931 + (CCA)n Simple_repeat Simple_repeat 2 180 0 8 1217 7061 24 0 0 chr1 82953573 82954379 -114241053 + L1Md_A LINE L1 4780 5585 -298 8 1217 8679 31 0 0 chr1 82954380 82955376 -114240056 + L1Md_A LINE L1 5587 6582 0 8 1217 1196 54 0 26 chr1 82955511 82955663 -114239769 + B1_Mus1 SINE Alu 1 148 0 8 1217 577 281 0 0 chr1 82956863 82957016 -114238416 + (CGG)n Simple_repeat Simple_repeat 2 154 0 8 1217 479 320 0 0 chr1 82957024 82957196 -114238236 + (CTG)n Simple_repeat Simple_repeat 3 174 0 8 1217 183 217 0 0 chr1 82957210 82957270 -114238162 + (CTG)n Simple_repeat Simple_repeat 1 60 0 8 1217 670 293 104 28 chr1 82957992 82958462 -114236970 + Lx8 LINE L1 6909 7414 -59 8 1217 1641 195 245 94 chr1 82959139 82959670 -114235762 + RMER19C LTR ERVK 1 611 0 8 1217 1826 173 8 6 chr1 82960186 82960507 -114234925 - RMER1B Other Other -174 892 594 8 1217 24 0 0 0 chr1 82960542 82960566 -114234866 + AT_rich Low_complexity Low_complexity 1 24 0 8 1217 190 350 17 0 chr1 82960825 82960885 -114234547 - L2 LINE L2 -966 2453 2393 8 1217 2667 133 34 2 chr1 82961388 82961826 -114233606 + RLTR26 LTR ERVK 6 457 -185 8 1217 449 277 0 0 chr1 82961830 82961931 -114233501 + MTD LTR MaLR 150 250 -169 8 1217 262 326 200 17 chr1 82962556 82962731 -114232701 + B4 SINE B4 68 274 -18 8 1217 477 0 0 0 chr1 82962745 82962798 -114232634 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1217 432 0 0 0 chr1 82962798 82962846 -114232586 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1217 207 0 0 0 chr1 82962928 82962951 -114232481 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1217 1138 263 51 17 chr1 82964350 82964644 -114230788 - MTE2a LTR MaLR -13 366 63 8 1217 3788 171 0 5 chr1 82964815 82965479 -114229953 + L1_Mm LINE L1 4573 5233 -650 8 1217 397 301 22 43 chr1 82965485 82965624 -114229808 - B1F2 SINE Alu -8 141 6 8 1217 241 228 86 86 chr1 82965735 82965898 -114229534 + L1MC5 LINE L1 7764 7926 -35 8 1217 194 169 51 25 chr1 82966147 82966226 -114229206 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 8 1217 377 333 0 9 chr1 82966226 82966332 -114229100 - PB1D10 SINE Alu -9 108 4 8 1217 25 31 0 0 chr1 82966347 82966379 -114229053 + AT_rich Low_complexity Low_complexity 1 32 0 8 1217 502 311 70 32 chr1 82966689 82967001 -114228431 + L1ME1 LINE L1 5855 6178 -1 8 1217 1365 261 77 7 chr1 82967144 82967584 -114227848 - L1M2 LINE L1 -2302 3841 3371 8 152 700 250 124 67 chr1 82968564 82968950 -114226482 - MER92A LTR ERV1 0 412 5 8 1218 336 271 28 9 chr1 82969277 82969385 -114226047 + PB1D10 SINE Alu 1 110 -7 8 1218 224 308 51 13 chr1 82969599 82969678 -114225754 + RSINE1 SINE B4 84 165 0 8 1218 393 117 0 0 chr1 82969700 82969760 -114225672 + (TAA)n Simple_repeat Simple_repeat 1 60 0 8 1218 219 154 0 0 chr1 82971581 82971620 -114223812 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 8 1218 1437 172 58 7 chr1 82971622 82971897 -114223535 - Lx3C LINE L1 -5 6971 6683 8 1218 796 283 11 0 chr1 82972056 82972236 -114223196 + B3A SINE B2 1 182 -16 8 1218 209 271 17 0 chr1 82972236 82972295 -114223137 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1218 230 247 69 23 chr1 82972592 82972679 -114222753 + MIR SINE MIR 61 151 -111 8 1218 204 260 0 39 chr1 82972920 82972959 -114222473 + polypyrimidine Low_complexity Low_complexity 15 52 0 8 1218 1558 149 272 10 chr1 82972959 82973271 -114222161 + ORR1B1 LTR MaLR 1 394 0 8 1218 204 260 0 39 chr1 82973271 82973283 -114222149 + polypyrimidine Low_complexity Low_complexity 3 14 0 8 1218 289 279 0 11 chr1 82974427 82974514 -114220918 + RLTR40 LTR ERVK 10 95 -722 8 1218 358 283 104 11 chr1 82974704 82974886 -114220546 + MLT1C-int LTR MaLR 2 200 -1171 8 1218 252 306 30 61 chr1 82974881 82975013 -114220419 + MLT1C-int LTR MaLR 1334 1461 -28 8 1218 334 273 0 0 chr1 82975092 82975169 -114220263 - ID4_ SINE ID -1 82 6 8 1218 276 293 26 93 chr1 82975188 82975306 -114220126 - PB1 SINE Alu -6 121 1 8 1218 273 316 0 10 chr1 82975368 82975464 -114219968 + MLT1C LTR MaLR 192 286 -181 8 1218 361 158 0 0 chr1 82975685 82975742 -114219690 + ID4 SINE ID 16 72 -11 8 1218 233 69 0 0 chr1 82976278 82976307 -114219125 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 8 1218 930 157 0 0 chr1 82976307 82976485 -114218947 + GA-rich Low_complexity Low_complexity 1 178 0 8 1218 255 299 0 0 chr1 82977099 82977166 -114218266 - PB1D10 SINE Alu -17 100 34 8 1218 231 226 34 56 chr1 82977118 82977207 -114218225 - MT2B2 LTR ERVL -345 239 153 8 1218 358 111 0 0 chr1 82977680 82977734 -114217698 - Lx6 LINE L1 -14 7446 7393 8 1218 218 337 59 64 chr1 82978554 82978741 -114216691 + L2a LINE L2 3018 3203 -223 8 1218 609 168 168 0 chr1 82979139 82979258 -114216174 + B1_Mur1 SINE Alu 5 143 -6 8 1218 2139 123 3 66 chr1 82980248 82980596 -114214836 - ORR1A2 LTR MaLR 0 327 2 8 1218 880 190 30 91 chr1 82981467 82981699 -114213733 + URR1B DNA MER1_type 8 225 0 8 1218 1338 224 66 35 chr1 82982070 82982417 -114213015 + ORR1D2 LTR MaLR 1 358 -12 8 1218 666 37 0 0 chr1 82982607 82982688 -114212744 + (TC)n Simple_repeat Simple_repeat 2 82 0 8 1218 658 231 54 0 chr1 82982688 82982818 -114212614 - B1_Mur2 SINE Alu -12 137 1 8 1218 603 250 176 0 chr1 82983040 82983216 -114212216 - B3 SINE B2 -8 208 2 8 1218 21 0 0 0 chr1 82983600 82983621 -114211811 + AT_rich Low_complexity Low_complexity 1 21 0 8 1218 180 366 43 43 chr1 82983998 82984138 -114211294 - MER5A DNA MER1_type -23 166 27 8 1218 530 45 15 0 chr1 82984601 82984668 -114210764 - L1_Mus3 LINE L1 -468 6170 6103 8 1218 2893 78 36 14 chr1 82984668 82985086 -114210346 + L1_Mus3 LINE L1 6212 6638 0 8 1218 3150 56 5 12 chr1 82986398 82986797 -114208635 - MTA_Mm LTR MaLR 0 396 1 8 1218 27 29 0 0 chr1 82986945 82986979 -114208453 + AT_rich Low_complexity Low_complexity 1 34 0 8 1218 764 273 115 60 chr1 82988886 82989494 -114205938 + RMER13A LTR ERVK 2 693 -215 8 1218 1192 153 28 9 chr1 82990259 82990476 -114204956 - URR1B DNA MER1_type 0 225 5 8 1218 342 0 0 0 chr1 82992477 82992515 -114202917 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1218 262 330 9 52 chr1 82992516 82992631 -114202801 - B3A SINE B2 -52 146 37 8 1218 326 331 78 19 chr1 82993093 82993361 -114202071 - L1M5 LINE L1 -2632 3514 3231 8 1218 567 78 0 0 chr1 82993436 82993513 -114201919 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 1218 940 141 0 21 chr1 82993520 82993665 -114201767 - B1_Mur2 SINE Alu -7 142 1 8 1218 917 108 42 6 chr1 82994236 82994404 -114201028 - B2_Mm2 SINE B2 -18 177 4 8 1218 378 91 0 0 chr1 82994685 82994740 -114200692 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1218 684 241 39 26 chr1 82995452 82995613 -114199819 + B3A SINE B2 1 160 -38 8 1218 288 0 0 0 chr1 82995613 82995645 -114199787 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1218 419 267 79 74 chr1 82995645 82995673 -114199759 + B2_Mm2 SINE B2 158 190 -5 8 1218 566 341 28 71 chr1 82995853 82996195 -114199237 - MLT1B LTR MaLR -15 375 36 8 1218 192 314 0 0 chr1 82997201 82997370 -114198062 + (TGG)n Simple_repeat Simple_repeat 3 171 0 8 1218 495 296 0 16 chr1 82997388 82997570 -114197862 + (CTG)n Simple_repeat Simple_repeat 2 180 0 8 1218 232 333 0 12 chr1 82998647 82998729 -114196703 - MLT1B LTR MaLR -42 348 268 8 1218 834 203 176 5 chr1 82998822 82999015 -114196417 - MTC LTR MaLR 0 421 196 8 1218 450 53 0 0 chr1 82999015 82999072 -114196360 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 8 1218 546 198 19 2 chr1 83001476 83001592 -114193840 - MTC LTR MaLR -207 214 71 1 1218 1033 245 80 0 chr1 83001593 83001842 -114193590 + Lx8 LINE L1 6247 6515 -958 2 1218 454 289 7 75 chr1 83002304 83002450 -114192982 - B4A SINE B4 0 292 157 3 1218 370 277 9 35 chr1 83002453 83002569 -114192863 - ID_B1 SINE B4 -25 199 87 4 1218 214 267 71 82 chr1 83002677 83002775 -114192657 + PB1 SINE Alu 29 125 -2 5 1218 270 0 0 0 chr1 83002849 83002879 -114192553 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1218 930 296 32 0 chr1 83003651 83003931 -114191501 + B4A SINE B4 2 290 -2 7 1218 1677 166 125 68 chr1 83004557 83004876 -114190556 + RMER4A LTR ERVK 1 345 -121 8 1218 609 14 0 0 chr1 83004876 83004946 -114190486 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 1218 1677 166 125 68 chr1 83004946 83005029 -114190403 + RMER4A LTR ERVK 346 439 -27 8 1218 2966 51 51 0 chr1 83005029 83005400 -114190032 + RLTR10 LTR ERVK 1 390 0 1 1218 1677 166 125 68 chr1 83005400 83005437 -114189995 + RMER4A LTR ERVK 440 465 -1 8 1218 200 128 0 25 chr1 83005447 83005487 -114189945 + A-rich Low_complexity Low_complexity 1 39 0 1 1218 335 292 52 52 chr1 83006168 83006323 -114189109 - RSINE1 SINE B4 0 165 11 1 1218 25 75 0 0 chr1 83006323 83006376 -114189056 + AT_rich Low_complexity Low_complexity 1 53 0 1 1218 1908 229 30 13 chr1 83006738 83007132 -114188300 - Lx6 LINE L1 -177 7283 6883 1 1218 1933 133 122 0 chr1 83007599 83007944 -114187488 + ORR1B1 LTR MaLR 1 387 -7 1 1218 517 304 52 6 chr1 83008156 83008328 -114187104 - Tigger7 DNA MER2_type -2302 189 10 1 1218 3653 101 132 2 chr1 83008514 83009097 -114186335 + Lx2 LINE L1 6338 6996 -1 1 1218 283 275 87 0 chr1 83009150 83009219 -114186213 + ID SINE ID 1 75 -149 1 1218 1466 253 24 11 chr1 83009847 83010219 -114185213 + MTEa LTR MaLR 3 379 0 1 1218 306 269 95 87 chr1 83011484 83011610 -114183822 + ID_B1 SINE B4 79 205 -19 1 1218 393 75 0 0 chr1 83012735 83012788 -114182644 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1218 678 282 130 62 chr1 83013052 83013407 -114182025 + MTE2a LTR MaLR 1 379 0 2 1218 720 215 124 16 chr1 83013509 83013703 -114181729 + B3 SINE B2 1 215 -1 2 1218 282 122 0 0 chr1 83013711 83013752 -114181680 + B2_Mm2 SINE B2 1 41 -154 2 1218 2470 15 0 0 chr1 83013752 83014025 -114181407 - L1Md_T LINE L1 -43 5840 5568 2 1218 5899 66 3 0 chr1 83014025 83014768 -114180664 + L1Md_T LINE L1 5838 6582 0 2 1218 1015 103 0 68 chr1 83014775 83014952 -114180480 + B2_Mm2 SINE B2 28 192 -3 2 1218 588 294 103 0 chr1 83015062 83015246 -114180186 - ID_B1 SINE B4 -6 218 16 2 1218 627 14 0 0 chr1 83016205 83016277 -114179155 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1218 945 107 0 0 chr1 83016566 83016706 -114178726 + (TCCC)n Simple_repeat Simple_repeat 3 142 0 2 1218 755 184 50 0 chr1 83017732 83017873 -114177559 + B1_Mus1 SINE Alu 1 148 0 2 1218 258 32 0 0 chr1 83017873 83017904 -114177528 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 2 1218 795 310 62 40 chr1 83017905 83018177 -114177255 + B4 SINE B4 2 279 -13 3 1218 784 233 168 20 chr1 83018463 83018713 -114176719 + B4A SINE B4 6 292 0 3 1218 486 46 0 0 chr1 83018814 83018879 -114176553 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 3 1218 907 174 196 6 chr1 83020150 83020329 -114175103 + B3 SINE B2 4 216 0 3 1218 414 0 0 0 chr1 83020461 83020507 -114174925 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1218 1365 88 6 0 chr1 83020723 83020904 -114174528 + B2_Mm1t SINE B2 3 184 -9 3 1218 473 232 62 0 chr1 83021379 83021491 -114173941 - B1_Mur1 SINE Alu -28 121 3 3 1218 1025 144 200 0 chr1 83022021 83022201 -114173231 - B3 SINE B2 0 216 1 3 1218 324 0 0 0 chr1 83022527 83022563 -114172869 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 3 1218 724 107 83 15 chr1 83023642 83023775 -114171657 - B1_Mus1 SINE Alu 0 148 7 3 1218 27 0 0 0 chr1 83024009 83024036 -114171396 + AT_rich Low_complexity Low_complexity 1 27 0 4 1218 4341 88 7 3 chr1 83024507 83025089 -114170343 - MT2B2 LTR ERVL 0 584 1 4 1218 258 32 0 0 chr1 83025266 83025297 -114170135 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1218 217 347 51 0 chr1 83026180 83026278 -114169154 + L2a LINE L2 3300 3402 -24 4 1218 753 242 111 5 chr1 83026544 83026743 -114168689 - ID_B1 SINE B4 -2 222 3 4 1218 1562 194 33 27 chr1 83027120 83027572 -114167860 + RMER17C LTR ERVK 16 439 -519 4 1218 594 264 0 73 chr1 83027665 83027707 -114167725 + RSINE1 SINE B4 2 42 -123 4 1218 4243 10 0 97 chr1 83027707 83028253 -114167179 + MT2_Mm LTR ERVL 1 493 0 4 1218 594 264 0 73 chr1 83028253 83028361 -114167071 + RSINE1 SINE B4 43 141 -24 4 1218 375 113 0 0 chr1 83028414 83028476 -114166956 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1218 612 62 0 0 chr1 83028840 83028921 -114166511 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 4 1218 247 146 36 0 chr1 83029913 83029968 -114165464 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1218 222 208 0 0 chr1 83030682 83030735 -114164697 + A-rich Low_complexity Low_complexity 3 55 0 5 1218 192 77 0 0 chr1 83030787 83030813 -114164619 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1218 262 22 89 0 chr1 83030807 83030852 -114164580 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 5 1218 909 154 7 7 chr1 83031008 83031158 -114164274 + B1_Mur4 SINE Alu 1 150 0 5 1218 399 269 95 63 chr1 83031718 83031940 -114163492 + L1ME2 LINE L1 5829 6057 -107 5 1218 302 67 0 22 chr1 83032739 83032785 -114162647 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 5 1218 194 248 196 36 chr1 83033530 83033668 -114161764 + MIRb SINE MIR 5 164 -104 5 1218 297 0 0 0 chr1 83034055 83034088 -114161344 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1218 23 0 0 0 chr1 83035643 83035666 -114159766 + AT_rich Low_complexity Low_complexity 1 23 0 5 1218 49 18 0 0 chr1 83036142 83036198 -114159234 + AT_rich Low_complexity Low_complexity 1 56 0 6 1218 4628 48 5 12 chr1 83036277 83036850 -114158582 + L1Md_F2 LINE L1 6012 6580 -2 6 1218 24 0 0 0 chr1 83038107 83038131 -114157301 + AT_rich Low_complexity Low_complexity 1 24 0 6 1218 263 307 0 26 chr1 83038702 83038819 -114156613 + (CAG)n Simple_repeat Simple_repeat 1 114 0 6 1218 231 259 0 0 chr1 83038819 83038931 -114156501 + (CCA)n Simple_repeat Simple_repeat 3 114 0 6 1218 948 103 13 6 chr1 83039753 83039910 -114155522 + (GAA)n Simple_repeat Simple_repeat 1 158 0 6 1218 391 310 83 31 chr1 83040205 83040398 -114155034 + MER20 DNA MER1_type 3 205 -14 6 1218 917 102 6 19 chr1 83040398 83040558 -114154874 + (GAA)n Simple_repeat Simple_repeat 1 158 0 6 1218 370 292 0 0 chr1 83041969 83042089 -114153343 + (CGG)n Simple_repeat Simple_repeat 2 121 0 6 1218 192 224 8 33 chr1 83042115 83042235 -114153197 + (CTG)n Simple_repeat Simple_repeat 1 117 0 6 1218 216 97 0 0 chr1 83042443 83042474 -114152958 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1218 637 291 21 60 chr1 83043077 83043311 -114152121 + B4A SINE B4 68 292 0 7 1218 236 356 0 0 chr1 83043411 83043498 -114151934 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1218 316 147 46 128 chr1 83045894 83046003 -114149429 - B3 SINE B2 0 216 117 7 1218 223 231 19 0 chr1 83045987 83046039 -114149393 - AluF_3 SINE Alu -104 207 155 7 1218 204 86 0 54 chr1 83046946 83046983 -114148449 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 7 1218 186 71 0 0 chr1 83047058 83047086 -114148346 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 7 1218 241 359 8 25 chr1 83047098 83047218 -114148214 + MLT1A LTR MaLR 40 157 -217 7 1218 8398 188 63 36 chr1 83047348 83049233 -114146199 - Lx7 LINE L1 0 7696 5760 7 1218 295 360 78 57 chr1 83049259 83049463 -114145969 + B4A SINE B4 2 213 -79 7 1218 299 345 8 0 chr1 83049822 83049941 -114145491 + L1MC4 LINE L1 7313 7432 -610 8 1218 522 278 85 8 chr1 83050510 83050746 -114144686 + MER92C LTR ERV1 203 456 -98 8 1218 874 61 0 0 chr1 83051146 83051260 -114144172 - ORR1A3 LTR MaLR 0 326 213 8 1218 740 42 10 0 chr1 83051261 83051357 -114144075 + (TCCCC)n Simple_repeat Simple_repeat 1 97 0 8 1218 312 218 167 0 chr1 83051384 83051462 -114143970 - B1_Mm SINE Alu -43 104 14 8 1218 522 300 151 59 chr1 83051566 83051903 -114143529 + MTEa LTR MaLR 11 378 -1 8 1218 502 276 77 19 chr1 83052025 83052180 -114143252 + RSINE1 SINE B4 2 165 0 8 1218 230 236 0 27 chr1 83052181 83052255 -114143177 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1218 280 265 13 99 chr1 83052317 83052468 -114142964 - Lx7 LINE L1 0 7696 7559 8 1218 342 0 0 0 chr1 83052496 83052534 -114142898 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1218 486 0 0 0 chr1 83052534 83052587 -114142845 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1218 1506 230 166 28 chr1 83052589 83052699 -114142733 - Lx7 LINE L1 -342 7354 7244 8 1218 3092 80 7 2 chr1 83052699 83053102 -114142330 + MTB_Mm LTR MaLR 3 407 0 9 1218 1506 230 166 28 chr1 83053102 83053456 -114141976 - Lx7 LINE L1 -453 7243 6826 8 1218 410 143 0 13 chr1 83054553 83054631 -114140801 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1218 350 269 0 25 chr1 83055584 83055702 -114139730 + (CAG)n Simple_repeat Simple_repeat 1 115 0 9 1218 255 274 0 0 chr1 83055707 83055871 -114139561 + (CCG)n Simple_repeat Simple_repeat 2 165 0 9 1218 270 122 0 89 chr1 83056849 83056939 -114138493 + (CTGTG)n Simple_repeat Simple_repeat 4 85 0 9 1218 357 256 0 0 chr1 83057597 83057765 -114137667 + (CGG)n Simple_repeat Simple_repeat 2 169 0 9 1218 204 212 0 0 chr1 83057845 83057911 -114137521 + (CTG)n Simple_repeat Simple_repeat 1 66 0 9 1218 444 51 0 0 chr1 83059426 83059485 -114135947 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1218 400 348 29 10 chr1 83060534 83060740 -114134692 - MLT1B LTR MaLR -29 361 152 9 1218 221 287 6 0 chr1 83061223 83061307 -114134125 + BC1_Mm scRNA scRNA 8 92 -60 1 1218 2884 104 10 5 chr1 83061643 83062060 -114133372 + L1_Mus4 LINE L1 6218 6636 0 1 1218 447 300 64 63 chr1 83062102 83062479 -114132953 + L1_Mur3 LINE L1 5127 5558 -742 1 1218 1226 258 67 6 chr1 83062480 83062823 -114132609 - MTD LTR MaLR -54 365 2 1 1218 267 265 47 58 chr1 83063360 83063532 -114131900 + L1M5 LINE L1 3785 3954 -2192 1 1218 25 31 0 0 chr1 83064222 83064254 -114131178 + AT_rich Low_complexity Low_complexity 1 32 0 1 1218 1068 102 7 0 chr1 83064309 83064456 -114130976 + B1_Mus1 SINE Alu 1 148 0 1 1218 254 62 45 45 chr1 83064456 83064517 -114130915 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 1 1218 973 208 17 61 chr1 83064751 83064981 -114130451 - ID_B1 SINE B4 0 224 5 1 1218 1422 209 34 120 chr1 83065097 83065505 -114129927 - ORR1D1 LTR MaLR -1 373 1 1 1218 404 320 40 56 chr1 83065655 83066029 -114129403 + L1M5 LINE L1 4802 5169 -977 1 1218 591 154 0 0 chr1 83066284 83066420 -114129012 + GA-rich Low_complexity Low_complexity 1 136 0 1 1218 1525 234 76 18 chr1 83066555 83066951 -114128481 - MTD LTR MaLR 0 419 1 1 1218 1005 102 0 81 chr1 83067015 83067175 -114128257 + B1_Mus1 SINE Alu 2 148 0 1 1218 1054 89 0 7 chr1 83067343 83067490 -114127942 - B1_Mus2 SINE Alu -1 146 1 1 1218 714 250 133 0 chr1 83067655 83067835 -114127597 + B3 SINE B2 7 210 -6 1 1218 222 37 0 0 chr1 83069086 83069113 -114126319 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1218 525 44 0 0 chr1 83069318 83069386 -114126046 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1218 259 301 67 10 chr1 83069386 83069490 -114125942 - RSINE1 SINE B4 -41 124 15 1 1218 613 226 7 15 chr1 83069502 83069637 -114125795 - B1_Mur1 SINE Alu -10 139 6 1 1218 232 59 126 10 chr1 83069675 83069778 -114125654 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 1218 211 275 114 14 chr1 83070279 83070349 -114125083 + ID4_ SINE ID 5 81 -2 1 1218 272 202 114 49 chr1 83071719 83071827 -114123605 - PB1D10 SINE Alu 0 149 27 1 1218 251 344 0 0 chr1 83072724 83072814 -114122618 - MIRb SINE MIR -64 204 115 1 1218 456 207 133 143 chr1 83074329 83074532 -114120900 - RMER30 DNA MER1_type 0 202 2 1 1218 881 274 99 18 chr1 83074659 83074993 -114120439 - MLT1A0 LTR MaLR 0 365 5 1 1218 331 244 11 22 chr1 83075078 83075164 -114120268 + L1MA8 LINE L1 6010 6095 -196 1 1218 246 271 52 78 chr1 83075164 83075280 -114120152 + PB1D10 SINE Alu 5 117 0 1 1218 560 185 99 44 chr1 83075339 83075520 -114119912 + L1MA8 LINE L1 6100 6290 -1 1 1218 317 317 88 31 chr1 83075826 83076018 -114119414 - MLT1D LTR MaLR -2 503 301 1 1218 290 222 32 0 chr1 83076155 83076218 -114119214 - MLT1D LTR MaLR -398 107 43 1 1218 525 219 178 0 chr1 83077624 83077770 -114117662 - URR1A DNA MER1_type -54 172 1 1 1218 834 186 202 0 chr1 83078667 83078855 -114116577 + URR1A DNA MER1_type 1 226 0 1 1218 22 0 0 0 chr1 83078991 83079013 -114116419 + AT_rich Low_complexity Low_complexity 1 22 0 1 1218 669 238 21 0 chr1 83079506 83079649 -114115783 - RSINE1 SINE B4 -17 148 3 1 1218 242 309 84 19 chr1 83079718 83079873 -114115559 - L1MB5 LINE L1 -176 5998 5834 1 1218 180 0 0 0 chr1 83080648 83080668 -114114764 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1218 1194 70 0 0 chr1 83080668 83080826 -114114606 - B2_Mm2 SINE B2 -37 158 1 1 1218 21 57 0 0 chr1 83080912 83080947 -114114485 + AT_rich Low_complexity Low_complexity 1 35 0 1 1218 217 323 65 0 chr1 83081178 83081240 -114114192 + MIRb SINE MIR 24 89 -179 1 1218 210 37 0 0 chr1 83081742 83081769 -114113663 + (CTAA)n Simple_repeat Simple_repeat 3 29 0 1 1218 22 35 0 0 chr1 83082859 83082888 -114112544 + AT_rich Low_complexity Low_complexity 1 29 0 1 1218 180 135 0 0 chr1 83083217 83083254 -114112178 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1218 1333 222 121 18 chr1 83083724 83084104 -114111328 + MTD LTR MaLR 1 419 0 1 1218 231 350 84 0 chr1 83084216 83084359 -114111073 + MIRb SINE MIR 56 210 -58 1 1218 267 79 0 0 chr1 83084641 83084679 -114110753 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1218 662 319 68 55 chr1 83085056 83085181 -114110251 - Lx8 LINE L1 -2 7471 7329 1 1218 312 27 0 0 chr1 83085181 83085218 -114110214 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1 1218 662 319 68 55 chr1 83085218 83085417 -114110015 - Lx8 LINE L1 -145 7328 7144 1 1218 188 154 0 19 chr1 83085682 83085735 -114109697 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1218 211 167 0 62 chr1 83086523 83086587 -114108845 + (GTATG)n Simple_repeat Simple_repeat 3 62 0 1 1218 394 239 57 0 chr1 83086911 83086999 -114108433 + RSINE1 SINE B4 2 94 -71 1 1218 26 0 0 0 chr1 83088381 83088407 -114107025 + AT_rich Low_complexity Low_complexity 1 26 0 1 1218 22 0 0 0 chr1 83088506 83088528 -114106904 + AT_rich Low_complexity Low_complexity 1 22 0 1 1218 200 163 23 0 chr1 83088909 83088952 -114106480 + C-rich Low_complexity Low_complexity 3 46 0 1 1218 688 308 29 50 chr1 83089032 83089312 -114106120 - Lx8 LINE L1 -414 7059 6786 1 1218 306 224 197 88 chr1 83089613 83089750 -114105682 + Lx8 LINE L1 6097 6248 -1225 1 1218 459 281 24 48 chr1 83089751 83089887 -114105545 + G-rich Low_complexity Low_complexity 2 135 0 1 1218 2300 22 86 0 chr1 83089887 83090156 -114105276 - RLTR10B LTR ERVK 0 292 1 1 1218 459 281 24 48 chr1 83090156 83090187 -114105245 + G-rich Low_complexity Low_complexity 136 165 0 1 1218 235 194 0 40 chr1 83090200 83090275 -114105157 + G-rich Low_complexity Low_complexity 4 75 0 1 1218 2593 271 40 17 chr1 83090334 83091032 -114104400 + Lx8 LINE L1 6253 6966 -507 1 1218 1193 235 66 10 chr1 83091046 83091347 -114104085 + Lx8 LINE L1 7038 7355 -118 1 1218 595 244 53 14 chr1 83091385 83091554 -114103878 + BGLII_B LTR ERVK 226 392 -49 1 1218 396 40 0 0 chr1 83091554 83091604 -114103828 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1218 595 244 53 14 chr1 83091604 83091642 -114103790 + BGLII_B LTR ERVK 393 440 -1 1 1218 2040 108 24 74 chr1 83091892 83092231 -114103201 - ORR1A2 LTR MaLR -1 326 5 1 1218 675 67 0 0 chr1 83092268 83092357 -114103075 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 1 1218 222 156 0 0 chr1 83092480 83092525 -114102907 + A-rich Low_complexity Low_complexity 1 45 0 1 1218 36 0 0 0 chr1 83094089 83094125 -114101307 + AT_rich Low_complexity Low_complexity 1 36 0 1 1218 1378 290 57 71 chr1 83094678 83095272 -114100160 - Lx8 LINE L1 -1 7472 6887 1 1218 851 59 8 0 chr1 83095351 83095469 -114099963 + (GA)n Simple_repeat Simple_repeat 2 120 0 1 1218 1133 268 65 15 chr1 83095470 83095811 -114099621 + MTE2b LTR MaLR 10 367 -12 1 1218 555 16 0 0 chr1 83095812 83095876 -114099556 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1218 407 259 56 35 chr1 83095941 83096085 -114099347 - B1F1 SINE Alu -2 147 1 1 1218 429 20 0 0 chr1 83096966 83097016 -114098416 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1218 189 0 0 0 chr1 83097078 83097099 -114098333 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1218 340 267 22 11 chr1 83097508 83097599 -114097833 - RSINE1 SINE B4 -71 94 3 1 1218 195 100 0 0 chr1 83097619 83097649 -114097783 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1218 207 100 0 0 chr1 83098443 83098473 -114096959 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 1218 672 48 0 0 chr1 83099304 83099388 -114096044 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1218 483 267 125 0 chr1 83099411 83099531 -114095901 - B4A SINE B4 -21 271 137 1 1219 1013 111 0 11 chr1 83099784 83099966 -114095466 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1219 1305 6 35 0 chr1 83099987 83100161 -114095271 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1219 614 85 0 19 chr1 83100171 83100279 -114095153 + (TATG)n Simple_repeat Simple_repeat 2 107 0 1 1219 294 29 0 0 chr1 83100279 83100314 -114095118 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 1 1219 1025 266 18 18 chr1 83100543 83100819 -114094613 + B4A SINE B4 15 290 -2 1 1219 23 0 0 0 chr1 83101029 83101052 -114094380 + AT_rich Low_complexity Low_complexity 1 23 0 1 1219 226 150 0 0 chr1 83101822 83101862 -114093570 + LTR16E1 LTR ERVL 448 487 -51 1 1219 308 317 58 0 chr1 83101999 83102103 -114093329 - PB1 SINE Alu -3 124 15 1 1219 229 282 14 14 chr1 83102345 83102417 -114093015 + MIR3 SINE MIR 107 178 -30 1 1219 658 233 30 6 chr1 83102642 83102806 -114092626 + Lx9 LINE L1 7322 7489 -155 1 1219 267 31 0 0 chr1 83102849 83102881 -114092551 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1219 315 0 0 0 chr1 83102881 83102915 -114092517 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1219 28 20 0 56 chr1 83102948 83103002 -114092430 + AT_rich Low_complexity Low_complexity 1 51 0 1 1219 310 197 88 50 chr1 83103590 83103662 -114091770 + ID4_ SINE ID 1 78 -5 1 1219 645 80 0 0 chr1 83103662 83103750 -114091682 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 1 1219 198 118 0 0 chr1 83103816 83103850 -114091582 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1219 217 184 20 0 chr1 83103860 83103909 -114091523 + (CAGAGA)n Simple_repeat Simple_repeat 1 50 0 1 1219 342 67 0 0 chr1 83104948 83104993 -114090439 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1219 1569 140 82 11 chr1 83105190 83105517 -114089915 - ORR1C1 LTR MaLR -1 369 1 1 1219 944 300 28 83 chr1 83106964 83107321 -114088111 + L1MA4A LINE L1 5338 5681 -610 1 1219 243 0 0 0 chr1 83107321 83107348 -114088084 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1219 944 299 28 84 chr1 83107348 83107607 -114087825 + L1MA4A LINE L1 5682 5918 -385 1 1219 1278 281 112 36 chr1 83107822 83108597 -114086835 - L1MB7 LINE L1 -15 6169 5336 1 1219 441 0 0 0 chr1 83108641 83108690 -114086742 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1219 322 333 0 0 chr1 83108690 83108777 -114086655 - RSINE1 SINE B4 -76 89 3 1 1219 467 191 67 42 chr1 83108801 83108921 -114086511 - L1MB7 LINE L1 -830 5316 5194 1 1219 236 238 146 7 chr1 83108928 83109072 -114086360 - L1MB7 LINE L1 -1560 4586 4423 1 1219 307 347 65 0 chr1 83109137 83109261 -114086171 - RSINE1 SINE B4 -31 134 3 1 1219 21 36 0 0 chr1 83109265 83109293 -114086139 + AT_rich Low_complexity Low_complexity 1 28 0 1 1219 1091 298 57 24 chr1 83109739 83110193 -114085239 - L1MB7 LINE L1 -1734 4412 3944 1 1219 183 80 0 0 chr1 83110221 83110246 -114085186 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1219 514 238 123 64 chr1 83110418 83110589 -114084843 - B3A SINE B2 -14 181 1 2 1219 1401 301 126 47 chr1 83110596 83111243 -114084189 - L1MB7 LINE L1 -2421 3725 2982 1 1219 1397 180 148 46 chr1 83111243 83111430 -114084002 - RMER17C LTR ERVK 0 410 183 2 1219 605 69 11 0 chr1 83111430 83111517 -114083915 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1219 1512 178 148 46 chr1 83111517 83111701 -114083731 - RMER17C LTR ERVK -186 224 2 2 1219 1361 294 139 48 chr1 83111701 83112370 -114083062 - L1MB7 LINE L1 -3165 2981 2297 1 1219 423 0 0 0 chr1 83112887 83112934 -114082498 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1219 930 43 0 0 chr1 83112934 83113048 -114082384 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 1219 218 340 48 10 chr1 83115087 83115191 -114080241 + MIRc SINE MIR 29 136 -132 2 1219 248 167 19 0 chr1 83116420 83116474 -114078958 + CT-rich Low_complexity Low_complexity 2 56 0 2 1219 387 0 0 0 chr1 83116474 83116517 -114078915 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1219 226 256 47 0 chr1 83116678 83116721 -114078711 - MIRm SINE MIR -29 247 203 2 1219 198 324 76 57 chr1 83116679 83116836 -114078596 - L2c LINE L2 -21 3366 3207 2 1219 527 304 9 19 chr1 83117023 83117190 -114078242 + MER20B DNA MER1_type 32 199 -20 2 1219 401 310 77 40 chr1 83118010 83118282 -114077150 - L1ME3 LINE L1 -1 6161 5880 2 1219 1106 145 0 24 chr1 83118473 83118643 -114076789 + B2_Mm2 SINE B2 1 166 -29 2 1219 480 307 66 49 chr1 83119209 83119435 -114075997 - B4A SINE B4 -20 272 43 2 1219 617 297 43 102 chr1 83121025 83121402 -114074030 - MER67C LTR ERV1 -315 396 12 2 1219 528 273 54 54 chr1 83121504 83121534 -114073898 + CYRA11_Mm Unknown Y-chromosome 141 170 -447 2 1219 1251 116 6 0 chr1 83121534 83121715 -114073717 - URR1A DNA MER1_type 0 226 45 2 1219 276 53 0 0 chr1 83121969 83122007 -114073425 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1219 387 0 0 0 chr1 83123051 83123094 -114072338 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1219 546 16 0 0 chr1 83123510 83123573 -114071859 + (TTCTC)n Simple_repeat Simple_repeat 4 66 0 2 1219 448 286 53 88 chr1 83124360 83124704 -114070728 - MTEb LTR MaLR -6 373 26 2 1219 573 55 0 0 chr1 83125662 83125735 -114069697 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1219 269 250 28 0 chr1 83125802 83125874 -114069558 - Lx9 LINE L1 -31 7613 7540 2 1219 450 0 0 0 chr1 83125879 83125929 -114069503 + (TTC)n Simple_repeat Simple_repeat 3 52 0 2 1219 386 150 180 42 chr1 83125929 83126096 -114069336 - Lx9 LINE L1 -32 7612 7423 2 1219 248 311 0 0 chr1 83126485 83126559 -114068873 - ID4_ SINE ID -7 76 3 2 1219 257 345 25 41 chr1 83126568 83126689 -114068743 - PB1 SINE Alu -8 119 1 2 1219 1090 176 88 0 chr1 83126874 83127078 -114068354 - URR1B DNA MER1_type 0 225 4 2 1219 210 152 0 0 chr1 83127976 83128009 -114067423 - PB1D10 SINE Alu -8 109 77 2 1219 291 144 39 31 chr1 83128012 83128141 -114067291 + (TA)n Simple_repeat Simple_repeat 1 130 0 2 1219 238 147 54 27 chr1 83128195 83128307 -114067125 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 2 1219 450 305 0 38 chr1 83128401 83128534 -114066898 + RSINE1 SINE B4 1 128 -37 2 1219 307 252 50 29 chr1 83128568 83128707 -114066725 + L1MA6 LINE L1 6141 6282 -18 2 1219 2774 96 5 23 chr1 83128707 83129103 -114066329 + L1_Mus3 LINE L1 6250 6638 0 2 1219 241 192 55 0 chr1 83129789 83129862 -114065570 + CT-rich Low_complexity Low_complexity 1 77 0 2 1219 604 226 7 14 chr1 83129923 83130062 -114065370 - B1F SINE Alu -6 143 6 2 1219 654 272 51 24 chr1 83130071 83130349 -114065083 - L1ME2z LINE L1 -296 5883 5595 2 1219 532 230 26 9 chr1 83130355 83130469 -114064963 - PB1D10 SINE Alu -1 116 1 2 1219 282 98 37 56 chr1 83130474 83130528 -114064904 - MIR SINE MIR -101 161 109 2 1219 438 313 182 16 chr1 83131161 83131408 -114064024 + B4A SINE B4 3 290 -2 2 1219 280 229 16 0 chr1 83131837 83131898 -114063534 + ID4_ SINE ID 3 64 -19 2 1219 540 179 0 0 chr1 83131898 83132049 -114063383 + GA-rich Low_complexity Low_complexity 1 151 0 2 1219 548 290 129 14 chr1 83132434 83132644 -114062788 + L1M5 LINE L1 5500 5733 -507 2 1219 723 318 79 19 chr1 83133989 83134255 -114061177 + B4 SINE B4 8 289 -3 2 1219 619 281 25 30 chr1 83135405 83135603 -114059829 - B3A SINE B2 0 198 2 2 1219 4391 8 0 0 chr1 83135603 83136272 -114059160 - L1Md_T LINE L1 -525 6057 5389 2 1219 2957 0 0 0 chr1 83136272 83136580 -114058852 + L1Md_T LINE L1 6275 6582 0 2 1219 5029 75 8 6 chr1 83136954 83137599 -114057833 - L1Md_F2 LINE L1 -1 6581 5936 2 1219 369 271 121 101 chr1 83139497 83139766 -114055666 - ORR1D2 LTR MaLR -48 331 9 2 1219 435 83 0 0 chr1 83141748 83141808 -114053624 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1219 3085 63 0 10 chr1 83142354 83142739 -114052693 + L1Md_F2 LINE L1 6195 6575 -7 2 1219 585 0 0 0 chr1 83142808 83142873 -114052559 + (CAAAC)n Simple_repeat Simple_repeat 5 69 0 2 1219 286 321 78 14 chr1 83144267 83144409 -114051023 - ERVL-E-int LTR ERVL -2398 3269 3119 2 1219 180 0 0 0 chr1 83146122 83146142 -114049290 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2 1219 1406 242 53 3 chr1 83146491 83146810 -114048622 - Lx6 LINE L1 -16 7444 7110 2 1219 254 262 16 16 chr1 83147484 83147546 -114047886 - Tigger5 DNA MER2_type 0 2406 2345 2 1219 434 288 0 78 chr1 83147638 83147766 -114047666 - Tigger5 DNA MER2_type -2284 122 5 2 1219 366 167 0 0 chr1 83149057 83149141 -114046291 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1219 227 311 71 30 chr1 83149954 83150123 -114045309 + RMER17D LTR ERVK 377 552 -337 2 1219 2633 313 62 21 chr1 83150124 83151045 -114044387 - Lx8 LINE L1 -257 7216 6268 2 1219 456 62 0 0 chr1 83151045 83151109 -114044323 + (TATG)n Simple_repeat Simple_repeat 2 65 0 2 1219 2633 313 62 21 chr1 83151109 83151190 -114044242 - Lx8 LINE L1 -1206 6267 6174 2 1219 387 0 0 0 chr1 83152194 83152237 -114043195 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1219 1312 194 149 28 chr1 83152237 83152390 -114043042 + ORR1D2 LTR MaLR 4 179 -191 2 1219 929 113 7 0 chr1 83152390 83152540 -114042892 + (TC)n Simple_repeat Simple_repeat 2 152 0 2 1219 1312 194 149 28 chr1 83152540 83152709 -114042723 + ORR1D2 LTR MaLR 180 365 -5 2 1219 338 321 109 43 chr1 83153030 83153257 -114042175 - MLT1A LTR MaLR -10 380 152 2 1219 265 286 29 39 chr1 83153276 83153378 -114042054 - MLT1A LTR MaLR -273 101 1 2 1219 414 57 0 0 chr1 83153555 83153608 -114041824 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1219 435 324 79 79 chr1 83154207 83154485 -114040947 + ORR1E LTR MaLR 77 354 -5 2 1219 5361 55 2 0 chr1 83154816 83155439 -114039993 + L1_Mus1 LINE L1 5944 6567 0 2 1219 237 293 0 94 chr1 83157170 83157234 -114038198 + RSINE1 SINE B4 108 165 0 2 1219 1442 241 56 28 chr1 83158242 83158601 -114036831 + MTD LTR MaLR 20 388 -31 2 1219 2839 193 74 44 chr1 83158976 83159573 -114035859 + RLTR18 LTR ERVK 2 616 0 2 1219 180 150 0 0 chr1 83160006 83160020 -114035412 + (TC)n Simple_repeat Simple_repeat 1 14 0 2 1219 1023 31 0 0 chr1 83160020 83160147 -114035285 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 2 1219 180 150 0 0 chr1 83160147 83160172 -114035260 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1219 258 366 68 84 chr1 83160428 83160881 -114034551 + L2a LINE L2 2975 3420 -6 2 1219 25 0 0 0 chr1 83161051 83161076 -114034356 + AT_rich Low_complexity Low_complexity 1 25 0 2 1219 1436 169 0 4 chr1 83162102 83162328 -114033104 - URR1B DNA MER1_type 0 225 1 2 1219 1515 76 0 5 chr1 83163413 83163598 -114031834 - B2_Mm2 SINE B2 -7 188 5 2 1219 218 136 45 0 chr1 83164553 83164597 -114030835 + T-rich Low_complexity Low_complexity 2 47 0 2 1219 351 148 34 0 chr1 83164875 83164963 -114030469 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2 1219 1177 290 120 50 chr1 83165225 83165940 -114029492 + Charlie1a DNA MER1_type 398 1162 -293 2 1219 357 24 0 0 chr1 83166015 83166057 -114029375 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 2 1219 2679 184 67 6 chr1 83166558 83167049 -114028383 - Lx5 LINE L1 -2 7048 6528 2 1219 19816 141 80 16 chr1 83167042 83167504 -114027928 - L1_Mur3 LINE L1 -551 5326 4855 2 1219 1195 26 0 13 chr1 83167504 83167657 -114027775 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 2 1219 19816 141 80 16 chr1 83167657 83167864 -114027568 - L1_Mur3 LINE L1 -1023 4854 4640 2 1219 243 0 0 0 chr1 83167864 83167891 -114027541 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1219 19816 141 80 16 chr1 83167891 83170447 -114024985 - L1_Mur3 LINE L1 -1238 4639 1872 2 1219 687 71 0 0 chr1 83170447 83170545 -114024887 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 1219 19816 141 80 16 chr1 83170545 83170612 -114024820 - L1_Mur3 LINE L1 -4006 1871 1794 2 1219 814 86 126 52 chr1 83170612 83170747 -114024685 - B1_Mm SINE Alu -1 146 2 2 1219 19816 141 80 16 chr1 83170747 83171135 -114024297 - L1_Mur3 LINE L1 -4084 1793 1414 2 1219 8088 60 1 0 chr1 83171128 83172285 -114023147 - L1Md_F2 LINE L1 0 6582 5425 2 1219 1246 197 13 22 chr1 83172252 83172751 -114022681 - L1_Mur3 LINE L1 -4424 1453 893 2 1219 718 297 52 5 chr1 83173621 83173831 -114021601 - Lx8 LINE L1 -172 7301 7082 2 1219 354 279 125 9 chr1 83173882 83173994 -114021438 - B3A SINE B2 -72 126 2 2 1219 237 305 141 54 chr1 83173995 83174144 -114021288 - L1MDb LINE L1 -5312 1097 936 2 1219 1270 13 79 0 chr1 83174216 83174368 -114021064 - L1Md_F3 LINE L1 0 6584 6421 2 1219 480 292 122 23 chr1 83174907 83175079 -114020353 - ORR1E LTR MaLR -167 192 4 2 1219 450 276 118 35 chr1 83175079 83175251 -114020181 + B4A SINE B4 78 261 -31 2 1219 3646 35 0 0 chr1 83175312 83175708 -114019724 - MTA_Mm LTR MaLR 0 396 1 2 1219 511 301 45 5 chr1 83176187 83176452 -114018980 - L1MC3 LINE L1 -219 7663 7429 2 1219 230 298 57 19 chr1 83176741 83176847 -114018585 - B4A SINE B4 -181 111 2 2 1219 214 149 0 78 chr1 83177199 83177224 -114018208 + T-rich Low_complexity Low_complexity 26 50 0 2 1219 1031 106 14 0 chr1 83177224 83177366 -114018066 - B1_Mur4 SINE Alu -2 148 5 2 1219 214 149 0 78 chr1 83177366 83177391 -114018041 + T-rich Low_complexity Low_complexity 4 25 0 3 1219 1697 32 11 0 chr1 83177571 83177760 -114017672 - B2_Mm1t SINE B2 -1 192 2 3 1219 201 338 0 27 chr1 83178360 83178433 -114016999 - L2c LINE L2 -4 3383 3313 3 1219 241 332 60 102 chr1 83180223 83180575 -114014857 + Tigger13a DNA MER2_type 2 338 -433 3 1219 22 0 0 0 chr1 83180657 83180679 -114014753 + AT_rich Low_complexity Low_complexity 1 22 0 3 1219 438 204 0 0 chr1 83180740 83180838 -114014594 + GA-rich Low_complexity Low_complexity 4 101 0 3 1219 417 277 37 30 chr1 83180840 83180974 -114014458 - RSINE1 SINE B4 -23 142 8 3 1219 401 81 16 0 chr1 83182403 83182465 -114012967 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1219 268 295 0 0 chr1 83183077 83183138 -114012294 + ID4 SINE ID 2 62 -21 3 1219 429 286 0 0 chr1 83183213 83183297 -114012135 + PB1D10 SINE Alu 2 85 -32 3 1219 186 71 0 0 chr1 83183340 83183368 -114012064 + (CAAAG)n Simple_repeat Simple_repeat 3 30 0 3 1219 459 300 85 0 chr1 83183587 83183717 -114011715 - B4 SINE B4 -70 222 82 3 1219 31 0 0 0 chr1 83183752 83183783 -114011649 + AT_rich Low_complexity Low_complexity 1 31 0 3 1219 393 22 0 0 chr1 83183795 83183841 -114011591 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1219 726 297 6 24 chr1 83183851 83184020 -114011412 - B3A SINE B2 -31 167 2 3 1219 1879 92 55 42 chr1 83184642 83184949 -114010483 + L1_Mus3 LINE L1 6324 6634 -4 3 1219 805 243 49 0 chr1 83185784 83185859 -114009573 + ID SINE ID 2 85 -139 3 1219 351 261 31 95 chr1 83185859 83186002 -114009430 + PB1D10 SINE Alu 1 127 0 3 1219 180 0 0 0 chr1 83187889 83187909 -114007523 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1219 336 48 0 0 chr1 83188901 83188943 -114006489 + (CCCCAG)n Simple_repeat Simple_repeat 2 43 0 3 1219 195 100 0 0 chr1 83189022 83189052 -114006380 + (CCGAG)n Simple_repeat Simple_repeat 4 33 0 3 1219 562 202 278 29 chr1 83189415 83189588 -114005844 - B3 SINE B2 0 216 1 3 1219 665 281 18 45 chr1 83190076 83190296 -114005136 - ID_B1 SINE B4 -7 217 4 3 1219 31 82 0 0 chr1 83190362 83190435 -114004997 + AT_rich Low_complexity Low_complexity 1 73 0 3 1219 5447 92 57 44 chr1 83190435 83191231 -114004201 - Lx3_Mus LINE L1 -6 7003 6198 3 1219 6923 66 16 20 chr1 83191231 83191546 -114003886 + Lx3_Mus LINE L1 4976 5275 -611 3 1219 280 41 40 20 chr1 83191546 83191596 -114003836 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1219 6923 73 19 17 chr1 83191596 83192523 -114002909 + Lx3_Mus LINE L1 5276 6218 -791 3 1219 231 290 20 0 chr1 83192527 83192627 -114002805 - L1MA5 LINE L1 -23 6277 6176 3 1219 266 200 11 130 chr1 83192645 83192737 -114002695 - L1MA5 LINE L1 -13 6287 6207 3 1219 764 221 50 25 chr1 83192794 83192994 -114002438 - B3 SINE B2 -11 205 1 3 1219 885 241 74 120 chr1 83193176 83193207 -114002225 + MTE2a LTR MaLR 6 34 -345 3 1219 866 189 178 0 chr1 83193207 83193398 -114002034 - URR1B DNA MER1_type 0 225 1 3 1219 885 241 74 120 chr1 83193398 83193757 -114001675 + MTE2a LTR MaLR 35 378 -1 3 1219 24 53 0 0 chr1 83194004 83194042 -114001390 + AT_rich Low_complexity Low_complexity 1 38 0 3 1219 344 300 35 35 chr1 83195015 83195160 -114000272 - ID_B1 SINE B4 -3 221 77 3 1219 180 176 0 0 chr1 83195939 83195973 -113999459 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 1219 334 41 0 93 chr1 83196004 83196058 -113999374 - B2_Mm1a SINE B2 -22 171 123 3 1219 605 91 102 0 chr1 83196120 83196208 -113999224 - B2_Mm1t SINE B2 -14 179 83 3 1219 3380 19 53 0 chr1 83196283 83196659 -113998773 - MTA_Mm LTR MaLR 0 396 1 3 1219 1204 62 7 0 chr1 83197335 83197480 -113997952 - B1_Mm SINE Alu -1 146 1 3 1219 751 142 9 0 chr1 83197523 83197636 -113997796 + RLTR9B2 LTR ERVK 307 420 0 3 1219 675 81 0 0 chr1 83197637 83197724 -113997708 - B2_Mm2 SINE B2 -107 88 2 3 1219 528 16 0 0 chr1 83197744 83197805 -113997627 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1219 207 0 0 0 chr1 83198696 83198719 -113996713 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1219 313 224 0 162 chr1 83199363 83199480 -113995952 + ID_B1 SINE B4 120 217 -7 3 1219 659 146 0 19 chr1 83199383 83199481 -113995951 + B1_Mur2 SINE Alu 46 142 -7 3 1219 396 59 0 0 chr1 83199481 83199532 -113995900 + (CCAA)n Simple_repeat Simple_repeat 4 54 0 3 1219 280 270 34 17 chr1 83200056 83200173 -113995259 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 3 1219 492 326 35 45 chr1 83200909 83201108 -113994324 + B3A SINE B2 2 198 0 3 1219 192 301 59 79 chr1 83201921 83202022 -113993410 - MIR SINE MIR -148 114 16 3 1219 1701 231 115 49 chr1 83202939 83203471 -113991961 - RMER2 LTR ERV1 0 567 1 3 1219 288 330 70 0 chr1 83203703 83203803 -113991629 + PB1D10 SINE Alu 1 107 -10 3 1219 405 39 0 0 chr1 83205485 83205536 -113989896 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1219 414 69 0 0 chr1 83205536 83205594 -113989838 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1219 489 277 14 7 chr1 83206134 83206272 -113989160 - B1F SINE Alu -8 141 3 3 1219 707 214 109 52 chr1 83207375 83207567 -113987865 + B3 SINE B2 1 203 -13 3 1219 1144 270 117 13 chr1 83207744 83208119 -113987313 + MTD LTR MaLR 6 419 0 3 1219 479 157 180 0 chr1 83208202 83208291 -113987141 + RMER6C LTR ERVK 1 105 -585 3 1219 286 349 0 0 chr1 83208844 83208976 -113986456 + (CCA)n Simple_repeat Simple_repeat 1 132 0 3 1219 1206 147 27 141 chr1 83209479 83209783 -113985649 - MMVL30-int LTR ERV1 -1668 2030 1779 3 1219 766 182 0 26 chr1 83209779 83209931 -113985501 - MMVL30-int LTR ERV1 -2035 1663 1516 3 1219 257 329 0 0 chr1 83209966 83210042 -113985390 - ID_B1 SINE B4 -70 154 79 3 1219 296 175 0 0 chr1 83210132 83210189 -113985243 - MMVL30-int LTR ERV1 -2187 1511 1455 3 1219 1159 200 31 23 chr1 83210494 83210750 -113984682 - MMVL30-int LTR ERV1 -2231 1467 1210 3 1219 1018 114 72 22 chr1 83210746 83210926 -113984506 - MMVL30-int LTR ERV1 -2736 962 774 3 1219 270 0 0 0 chr1 83211298 83211328 -113984104 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 3 1219 279 284 82 132 chr1 83211408 83211651 -113983781 - RLTR41 LTR ERV1 -30 416 186 3 1219 1561 158 285 48 chr1 83212036 83212676 -113982756 + RMER6C LTR ERVK 93 721 -35 3 1219 314 318 31 16 chr1 83212852 83212863 -113982569 - B1F SINE Alu -2 147 138 3 1219 618 109 0 0 chr1 83212863 83212955 -113982477 + (TCTG)n Simple_repeat Simple_repeat 1 92 0 3 1219 314 318 32 18 chr1 83212955 83213085 -113982347 - B1F SINE Alu -12 137 8 3 1219 381 270 11 0 chr1 83213277 83213366 -113982066 - 5S rRNA rRNA -31 90 1 3 1219 508 276 141 111 chr1 83213687 83214021 -113981411 - Lx8 LINE L1 -33 7440 7097 3 1219 800 212 212 0 chr1 83215505 83215675 -113979757 + B3 SINE B2 1 206 -10 3 1219 21 0 0 0 chr1 83215982 83216003 -113979429 + AT_rich Low_complexity Low_complexity 1 21 0 3 1219 241 231 0 0 chr1 83217802 83217841 -113977591 - 5S rRNA rRNA -82 39 1 3 1219 523 249 155 0 chr1 83218234 83218415 -113977017 + MLT1B LTR MaLR 180 388 -2 3 1219 1916 190 26 40 chr1 83218551 83218930 -113976502 - ORR1D1 LTR MaLR 0 374 1 3 1219 183 42 0 0 chr1 83219021 83219045 -113976387 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1219 240 204 0 0 chr1 83219083 83219127 -113976305 - MTE2b LTR MaLR -300 79 36 3 1219 1194 237 68 4 chr1 83219148 83219428 -113976004 + MTE2b LTR MaLR 80 377 -2 3 1219 285 29 0 0 chr1 83219451 83219485 -113975947 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 1219 1458 261 86 33 chr1 83219508 83220020 -113975412 - MER90a LTR ERV1 -23 591 53 3 1219 376 287 64 9 chr1 83220274 83220383 -113975049 + PB1D10 SINE Alu 1 115 -2 3 1219 4732 14 0 0 chr1 83220433 83220926 -113974506 - MT2_Mm LTR ERVL 0 493 1 3 1219 247 306 16 0 chr1 83221686 83221748 -113973684 - 5S rRNA rRNA -24 97 35 3 1219 618 82 0 0 chr1 83221756 83221841 -113973591 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 3 1219 351 0 0 0 chr1 83221914 83221953 -113973479 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1219 308 91 55 0 chr1 83221957 83222012 -113973420 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 3 1219 299 345 68 12 chr1 83222286 83222459 -113972973 - L2a LINE L2 -2 3424 3191 3 1219 366 352 67 53 chr1 83222506 83222788 -113972644 - MLT2C1 LTR ERVL -111 286 1 3 1219 880 228 96 14 chr1 83223296 83223505 -113971927 + URR1A DNA MER1_type 1 226 0 3 1219 345 47 0 0 chr1 83223966 83224009 -113971423 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1219 27 62 0 0 chr1 83224328 83224376 -113971056 + AT_rich Low_complexity Low_complexity 1 48 0 3 1219 776 267 111 28 chr1 83224752 83225041 -113970391 - Charlie5 DNA MER1_type -246 2378 2066 3 1219 268 281 124 0 chr1 83225030 83225119 -113970313 - Charlie5 DNA MER1_type -2518 106 7 3 1219 846 251 120 47 chr1 83225141 83225417 -113970015 + Lx7 LINE L1 6916 7211 -485 3 1219 732 37 139 0 chr1 83225418 83225526 -113969906 + L1Md_F3 LINE L1 6462 6584 0 3 1219 423 0 0 0 chr1 83225910 83225957 -113969475 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1219 33 25 0 0 chr1 83225987 83226027 -113969405 + AT_rich Low_complexity Low_complexity 1 40 0 3 1219 655 258 0 35 chr1 83226027 83226196 -113969236 + Lx7 LINE L1 7205 7367 -329 3 1219 966 107 0 0 chr1 83226197 83226374 -113969058 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 3 1219 2405 112 77 121 chr1 83226385 83226882 -113968550 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1219 4426 40 2 0 chr1 83226892 83227418 -113968014 + RLTR10-int LTR ERVK 41 567 -1420 3 1219 11529 75 31 30 chr1 83227414 83229013 -113966419 - IAPEz-int LTR ERVK -4714 1767 168 3 1219 264 280 93 0 chr1 83229013 83229088 -113966344 - RLTR27 LTR ERVK -34 275 194 3 1219 2730 29 2 148 chr1 83229066 83229512 -113965920 - RLTR10 LTR ERVK -9 381 1 3 152 16508 25 1 51 chr1 83229514 83231572 -113963860 - RLTR10-int LTR ERVK -3 1984 1 3 1220 3219 21 2 145 chr1 83231572 83232027 -113963405 - RLTR10 LTR ERVK 0 390 1 3 1220 309 117 0 0 chr1 83232027 83232087 -113963345 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 3 1220 581 208 41 12 chr1 83232091 83232261 -113963171 + Lx7 LINE L1 7358 7532 -164 3 1220 215 178 22 0 chr1 83232280 83232325 -113963107 - B4 SINE B4 -245 47 2 4 1220 741 110 66 33 chr1 83232325 83232476 -113962956 + Lx7 LINE L1 7541 7696 0 3 1220 675 311 87 11 chr1 83232559 83232946 -113962486 + Lx8 LINE L1 6948 7388 -85 4 1220 243 146 0 0 chr1 83233027 83233068 -113962364 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1220 254 254 13 66 chr1 83234646 83234722 -113960710 - PB1D10 SINE Alu 0 117 46 4 1220 877 270 5 0 chr1 83234751 83234947 -113960485 - B3 SINE B2 -13 203 7 4 1220 2774 272 74 22 chr1 83234952 83235875 -113959557 - RCHARR1 DNA MER1_type -1 973 3 4 1220 1147 101 0 20 chr1 83236186 83236201 -113959231 - B1_Mus1 SINE Alu 0 148 136 4 1220 255 31 0 0 chr1 83236201 83236233 -113959199 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1220 1147 101 0 20 chr1 83236233 83236368 -113959064 - B1_Mus1 SINE Alu -13 135 1 4 1220 216 0 0 0 chr1 83236508 83236532 -113958900 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 4 1220 424 143 0 23 chr1 83236533 83236619 -113958813 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1220 468 0 0 0 chr1 83236646 83236698 -113958734 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 4 1220 908 277 115 72 chr1 83236739 83237183 -113958249 - MT2A LTR ERVL -70 463 1 4 1220 260 266 150 27 chr1 83237352 83237499 -113957933 - MLT1G LTR MaLR -419 172 8 4 1220 366 23 0 0 chr1 83238176 83238219 -113957213 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1220 396 295 116 49 chr1 83238297 83238704 -113956728 + L5 LINE RTE 1151 1584 -681 4 1220 266 286 68 43 chr1 83239049 83239166 -113956266 + MTEa LTR MaLR 235 354 -25 4 1220 225 0 0 0 chr1 83239166 83239191 -113956241 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1220 387 0 0 19 chr1 83239244 83239297 -113956135 - L1Md_T LINE L1 -1 6581 6530 4 1220 224 284 117 25 chr1 83239301 83239446 -113955986 - MIRc SINE MIR -98 170 6 4 1220 553 168 10 0 chr1 83239473 83239574 -113955858 - URR1B DNA MER1_type 0 225 124 4 1220 446 255 27 33 chr1 83239763 83239913 -113955519 + RLTR43A LTR ERVK 216 364 0 4 1220 534 114 0 0 chr1 83239913 83239991 -113955441 - URR1B DNA MER1_type -91 134 57 4 1220 7751 98 15 5 chr1 83240222 83241849 -113953583 + L1_Mus4 LINE L1 4985 6630 -6 4 1220 3196 19 0 0 chr1 83241882 83242242 -113953190 + L1Md_T LINE L1 5227 5586 -297 4 1220 9077 26 1 2 chr1 83242243 83243239 -113952193 + L1Md_T LINE L1 5588 6582 0 4 1220 189 0 0 0 chr1 83244132 83244153 -113951279 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1220 828 178 7 88 chr1 83244154 83244302 -113951130 - B1_Mur4 SINE Alu -14 136 1 4 1220 483 18 0 0 chr1 83244308 83244364 -113951068 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 4 1220 591 60 0 0 chr1 83244505 83244589 -113950843 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 4 1220 568 275 99 17 chr1 83244665 83244846 -113950586 - B3A SINE B2 0 198 3 4 1220 284 382 35 0 chr1 83246056 83246200 -113949232 + MIR SINE MIR 81 229 -33 4 1220 669 276 17 89 chr1 83247008 83247299 -113948133 + Lx8 LINE L1 7185 7454 -19 4 1220 232 306 18 26 chr1 83247393 83247507 -113947925 + CT-rich Low_complexity Low_complexity 3 115 0 4 1220 24 0 0 0 chr1 83247536 83247560 -113947872 + AT_rich Low_complexity Low_complexity 1 24 0 4 1220 212 206 68 10 chr1 83247893 83247996 -113947436 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1220 624 348 64 44 chr1 83249527 83249870 -113945562 + MER77 LTR ERVL 251 600 -7 4 1220 836 300 170 32 chr1 83250644 83251198 -113944234 + MER92B LTR ERV1 3 632 -4 4 1220 733 314 29 10 chr1 83251554 83251763 -113943669 + MER20 DNA MER1_type 1 213 -6 4 1220 551 40 0 13 chr1 83251877 83251952 -113943480 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 4 1220 609 14 0 0 chr1 83254592 83254662 -113940770 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 4 1220 396 0 0 0 chr1 83255655 83255699 -113939733 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1220 243 0 0 0 chr1 83256376 83256403 -113939029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1220 473 348 0 29 chr1 83256404 83256540 -113938892 - B1F2 SINE Alu -11 138 7 4 1220 211 370 37 0 chr1 83256697 83256713 -113938719 - ID_B1 SINE B4 -125 99 16 4 1220 233 339 15 0 chr1 83256713 83256778 -113938654 - ID4 SINE ID -2 81 16 4 1220 396 248 91 23 chr1 83256788 83256920 -113938512 - B1F SINE Alu 0 149 9 4 1220 216 86 0 0 chr1 83257687 83257722 -113937710 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1220 822 260 50 46 chr1 83258274 83258419 -113937013 + ID_B1 SINE B4 1 155 -69 4 1220 719 282 60 6 chr1 83258419 83258601 -113936831 + B3A SINE B2 1 192 -6 4 1220 822 260 50 46 chr1 83258601 83258673 -113936759 + ID_B1 SINE B4 156 219 -5 4 1220 225 0 0 0 chr1 83259770 83259795 -113935637 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1220 182 37 37 0 chr1 83259926 83259953 -113935479 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1220 501 47 0 0 chr1 83264354 83264418 -113931014 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1220 442 304 8 8 chr1 83264421 83264547 -113930885 - RSINE1 SINE B4 -13 152 27 4 1220 235 325 100 19 chr1 83265161 83265321 -113930111 - MER113 DNA MER1_type -31 490 318 4 1220 272 251 53 73 chr1 83265596 83265632 -113929800 - B2_Mm2 SINE B2 0 195 84 4 1220 531 231 32 32 chr1 83265632 83265757 -113929675 - RSINE1 SINE B4 0 165 41 4 1220 272 251 53 73 chr1 83265757 83265781 -113929651 - B2_Mm2 SINE B2 0 83 2 4 1220 349 289 155 49 chr1 83265784 83266170 -113929262 - L1MEc LINE L1 -3057 3262 2836 4 1220 311 327 127 32 chr1 83266242 83266621 -113928811 - Lx8 LINE L1 -9 7464 7050 4 1220 832 272 117 25 chr1 83266682 83267239 -113928193 - L1MEc LINE L1 -3568 2751 2120 4 1220 259 207 35 0 chr1 83267648 83267706 -113927726 - L1MC LINE L1 -728 5605 5546 4 1220 242 256 49 0 chr1 83267727 83267809 -113927623 + L1MC LINE L1 5400 5485 -859 4 1220 241 217 17 0 chr1 83268215 83268275 -113927157 - L1MD LINE L1 -814 5332 5272 4 1220 1041 281 93 32 chr1 83268432 83268744 -113926688 - MTEa LTR MaLR -37 342 12 4 1220 788 242 130 10 chr1 83268825 83269017 -113926415 - B3 SINE B2 0 216 2 4 1220 253 263 13 0 chr1 83269017 83269093 -113926339 - L1MC LINE L1 -1243 4903 4827 4 1220 22 56 0 0 chr1 83269905 83269941 -113925491 + AT_rich Low_complexity Low_complexity 1 36 0 4 1220 339 157 0 0 chr1 83271279 83271349 -113924083 + A-rich Low_complexity Low_complexity 1 70 0 4 1220 471 35 0 0 chr1 83271711 83271768 -113923664 + (TTA)n Simple_repeat Simple_repeat 2 58 0 4 1220 365 295 144 16 chr1 83277673 83277844 -113917588 - MER67C LTR ERV1 -473 238 54 4 1220 198 143 0 0 chr1 83278278 83278313 -113917119 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 4 1220 637 290 28 62 chr1 83278341 83278631 -113916801 - B4A SINE B4 -12 280 1 4 1220 223 354 31 20 chr1 83279172 83279270 -113916162 + MER5A DNA MER1_type 8 106 -83 4 1220 966 113 20 0 chr1 83279871 83280022 -113915410 - URR1A DNA MER1_type 0 226 73 4 1220 1401 0 0 48 chr1 83280085 83280273 -113915159 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 4 1220 261 0 0 0 chr1 83280275 83280304 -113915128 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1220 1089 275 133 9 chr1 83280682 83281027 -113914405 + MTD LTR MaLR 20 407 -12 4 1220 211 278 22 141 chr1 83281740 83281832 -113913600 - AluG_3 SINE Alu -94 217 137 4 1220 372 153 0 14 chr1 83281894 83281967 -113913465 + Lx4B LINE L1 6899 6970 -88 4 1220 334 239 0 64 chr1 83281969 83282063 -113913369 + B3 SINE B2 113 200 -16 4 1220 630 160 0 88 chr1 83282244 83282381 -113913051 - Lx5 LINE L1 -245 6805 6681 4 1220 297 316 15 0 chr1 83283691 83283824 -113911608 + RLTR6-int LTR ERV1 7593 7727 -51 4 1220 2034 105 122 16 chr1 83283915 83284283 -113911149 + RLTR47_MM LTR ERV1 40 446 -86 4 1220 768 77 0 0 chr1 83284290 83284394 -113911038 + (GAAAA)n Simple_repeat Simple_repeat 2 105 0 4 1220 811 172 170 11 chr1 83285106 83285294 -113910138 - URR1B DNA MER1_type -3 222 5 4 1220 1484 204 30 15 chr1 83285608 83285942 -113909490 + Lx9 LINE L1 7079 7417 -227 4 1220 678 131 0 50 chr1 83285953 83286175 -113909257 + (CA)n Simple_repeat Simple_repeat 1 210 0 4 1220 380 235 0 25 chr1 83286175 83286297 -113909135 + Lx9 LINE L1 7519 7637 -7 4 1220 2937 190 0 17 chr1 83288544 83289075 -113906357 + RLTR11A LTR ERVK 7 528 0 4 1220 195 42 0 0 chr1 83289208 83289232 -113906200 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1220 264 212 0 0 chr1 83290014 83290080 -113905352 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1220 531 0 0 0 chr1 83290139 83290198 -113905234 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1220 242 315 172 43 chr1 83290288 83290474 -113904958 + B4 SINE B4 64 273 -19 4 1220 259 247 27 0 chr1 83290516 83290589 -113904843 + GA-rich Low_complexity Low_complexity 2 76 0 4 1220 695 320 120 81 chr1 83290602 83291414 -113904018 - Arthur1B DNA Tip100 -174 1051 178 4 1220 322 323 68 15 chr1 83292650 83292782 -113902650 - B3A SINE B2 -57 141 3 4 1220 288 0 0 0 chr1 83292787 83292819 -113902613 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4 1220 273 167 0 0 chr1 83293425 83293479 -113901953 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1220 282 29 0 0 chr1 83293550 83293585 -113901847 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1220 241 136 23 0 chr1 83294334 83294378 -113901054 - MusHAL1 LINE L1 -2044 668 624 4 1220 7550 52 4 6 chr1 83294608 83295826 -113899606 - L1Md_F2 LINE L1 -9 6573 5358 4 1220 450 277 71 45 chr1 83295941 83296209 -113899223 - L1MB8 LINE L1 -132 6046 5772 4 1220 453 220 45 9 chr1 83296839 83296949 -113898483 - B3 SINE B2 0 216 103 4 1220 200 277 82 24 chr1 83297244 83297329 -113898103 - MIR SINE MIR -127 135 46 4 1220 743 314 24 5 chr1 83297339 83297547 -113897885 + B4A SINE B4 8 219 -73 4 1220 235 220 0 20 chr1 83297635 83297686 -113897746 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1220 303 262 202 85 chr1 83297981 83298156 -113897276 + Lx8 LINE L1 7261 7461 -12 5 1220 1586 135 89 20 chr1 83298156 83298458 -113896974 - Lx LINE L1 -3 6651 6329 5 1220 303 262 202 85 chr1 83298458 83298470 -113896962 + Lx8 LINE L1 7462 7470 -3 5 1220 276 213 0 0 chr1 83299187 83299248 -113896184 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1220 475 270 31 58 chr1 83299831 83300055 -113895377 + Lx7 LINE L1 5699 5916 -1780 5 1220 480 352 60 16 chr1 83300075 83300257 -113895175 - B3 SINE B2 0 216 27 5 1220 30092 103 14 3 chr1 83300257 83306316 -113889116 - L1_Mus1 LINE L1 0 6567 442 5 1220 245 171 24 0 chr1 83306342 83306383 -113889049 - B3 SINE B2 -174 42 1 4 1220 417 178 25 0 chr1 83307265 83307383 -113888049 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 1220 366 147 0 0 chr1 83307385 83307453 -113887979 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1220 521 347 8 93 chr1 83307536 83307892 -113887540 - MT2A LTR ERVL -102 431 106 5 1220 300 333 79 0 chr1 83307892 83308018 -113887414 - MTE2a LTR MaLR -239 140 5 5 1220 229 276 25 50 chr1 83309089 83309169 -113886263 + LTR40b LTR ERVL 278 355 -107 5 1220 180 311 16 16 chr1 83309259 83309321 -113886111 - L2 LINE L2 -1414 2005 1944 5 1220 180 0 0 0 chr1 83310014 83310034 -113885398 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1220 237 222 139 0 chr1 83310738 83310810 -113884622 + B1_Mur2 SINE Alu 56 137 -12 5 1220 841 191 95 5 chr1 83310831 83311020 -113884412 + MTD LTR MaLR 1 206 -213 5 1220 845 222 71 14 chr1 83312974 83312998 -113882434 + MTD LTR MaLR 193 214 -205 5 1220 366 85 0 0 chr1 83312998 83313057 -113882375 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 1220 845 222 71 14 chr1 83313057 83313242 -113882190 + MTD LTR MaLR 215 413 -6 5 1220 611 283 4 62 chr1 83314506 83314637 -113880795 + BGLII_B LTR ERVK 1 127 -314 5 1220 351 0 0 0 chr1 83314637 83314676 -113880756 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1220 680 269 23 87 chr1 83314676 83314946 -113880486 + BGLII_B LTR ERVK 128 441 0 5 1220 333 0 0 0 chr1 83314952 83314989 -113880443 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1220 1158 122 0 0 chr1 83315008 83315188 -113880244 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1220 249 33 0 0 chr1 83315190 83315220 -113880212 + (TCC)n Simple_repeat Simple_repeat 1 30 0 5 1220 1643 154 181 3 chr1 83315526 83315846 -113879586 + ORR1C1 LTR MaLR 2 378 0 5 1220 3732 61 0 30 chr1 83316110 83316634 -113878798 - L1Md_F2 LINE L1 0 6582 6092 5 1220 3790 44 0 26 chr1 83316634 83317295 -113878137 + L1Md_F2 LINE L1 5442 6085 -497 5 1220 939 118 0 0 chr1 83317332 83317476 -113877956 + (TTCC)n Simple_repeat Simple_repeat 4 147 0 5 1220 562 324 123 1 chr1 83318343 83318616 -113876816 + MLT2B1 LTR ERVL 1 307 -208 5 1220 473 363 136 57 chr1 83318809 83319353 -113876079 + MLT1G3 LTR MaLR 9 595 0 5 1220 198 0 0 0 chr1 83319821 83319843 -113875589 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1220 1020 62 0 0 chr1 83320137 83320267 -113875165 - B1_Mm SINE Alu -8 139 10 5 1220 339 261 45 9 chr1 83320512 83320624 -113874808 - Charlie19a DNA Charlie -124 262 147 5 1220 204 40 0 0 chr1 83321780 83321805 -113873627 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1220 1039 252 191 3 chr1 83322011 83322326 -113873106 + ORR1D1 LTR MaLR 1 374 0 5 1220 480 35 0 0 chr1 83324132 83324190 -113871242 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1220 616 386 89 25 chr1 83324804 83325375 -113870057 + L1M4b LINE L1 5 612 -6722 5 1220 932 228 33 60 chr1 83326477 83326808 -113868624 - Lx7 LINE L1 -1 7695 7374 5 1220 486 262 109 5 chr1 83326882 83327074 -113868358 - Lx9 LINE L1 -237 7407 7196 5 1220 552 170 0 0 chr1 83327322 83327428 -113868004 + CT-rich Low_complexity Low_complexity 1 106 0 5 1220 361 261 34 0 chr1 83327561 83327642 -113867790 - B4 SINE B4 -114 178 95 5 1220 503 388 0 0 chr1 83327642 83327802 -113867630 + RSINE1 SINE B4 4 163 -2 5 1220 1060 219 5 18 chr1 83327854 83328073 -113867359 - B3 SINE B2 0 216 1 5 1220 208 146 0 68 chr1 83330131 83330175 -113865257 + CT-rich Low_complexity Low_complexity 1 41 0 5 1220 597 40 0 0 chr1 83330839 83330915 -113864517 + (CATCT)n Simple_repeat Simple_repeat 5 80 0 5 1220 188 35 35 0 chr1 83331344 83331373 -113864059 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 5 1220 243 0 0 0 chr1 83331374 83331401 -113864031 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1220 892 252 158 32 chr1 83331560 83331908 -113863524 + MTC LTR MaLR 23 399 -22 5 1220 233 351 40 0 chr1 83332382 83332456 -113862976 - B1F SINE Alu -36 113 37 5 1220 2179 168 3 19 chr1 83332799 83333164 -113862268 - ORR1B2 LTR MaLR -8 359 1 5 1220 279 0 0 0 chr1 83333840 83333871 -113861561 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 5 1220 964 114 6 6 chr1 83333905 83334064 -113861368 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 5 1220 815 248 39 113 chr1 83334121 83334430 -113861002 + B4A SINE B4 1 286 -6 5 1220 222 37 0 0 chr1 83334435 83334462 -113860970 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1220 225 244 12 49 chr1 83334472 83334554 -113860878 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 5 1220 591 130 47 6 chr1 83334555 83334725 -113860707 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1220 23 54 0 0 chr1 83334805 83334842 -113860590 + AT_rich Low_complexity Low_complexity 1 37 0 5 1220 344 248 86 21 chr1 83335048 83335188 -113860244 - Lx7 LINE L1 -404 7292 7144 5 1220 3055 83 2 0 chr1 83336393 83336812 -113858620 - L1_Mus1 LINE L1 -165 6402 5983 5 1220 1252 67 0 0 chr1 83336812 83336977 -113858455 + L1_Mus1 LINE L1 6403 6567 0 5 1220 4161 67 0 2 chr1 83338352 83338878 -113856554 - L1_Mus2 LINE L1 0 6566 6042 5 1220 21 0 0 0 chr1 83339255 83339276 -113856156 + AT_rich Low_complexity Low_complexity 1 21 0 5 1220 864 97 0 0 chr1 83340006 83340130 -113855302 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 5 1220 481 359 19 70 chr1 83340205 83340312 -113855120 - B4A SINE B4 -4 288 191 5 1220 3233 72 7 0 chr1 83340312 83340716 -113854716 + MTB_Mm LTR MaLR 1 407 0 5 1220 481 359 19 70 chr1 83340716 83340878 -113854554 - B4A SINE B4 -102 190 33 5 1220 386 63 0 104 chr1 83341516 83341622 -113853810 + G-rich Low_complexity Low_complexity 3 97 0 5 1220 551 141 61 0 chr1 83341623 83341722 -113853710 + B1_Mus2 SINE Alu 42 146 -1 5 1220 713 299 42 51 chr1 83341771 83341986 -113853446 + B3 SINE B2 1 213 -3 5 1220 185 387 89 0 chr1 83342638 83342762 -113852670 + MIRb SINE MIR 78 212 -56 5 1220 250 343 38 0 chr1 83343025 83343130 -113852302 + PB1D10 SINE Alu 1 109 -8 5 1220 3370 50 5 2 chr1 83343561 83343978 -113851454 - L1_Mus2 LINE L1 0 6566 6149 5 1220 1114 72 18 6 chr1 83343985 83344152 -113851280 - L1Md_F2 LINE L1 0 6582 6414 5 1220 526 320 151 12 chr1 83344597 83344856 -113850576 + MLT1A0 LTR MaLR 3 297 -68 5 1220 303 119 29 15 chr1 83344871 83344939 -113850493 + (TAA)n Simple_repeat Simple_repeat 3 71 0 5 1220 234 284 27 0 chr1 83345413 83345487 -113849945 - L1MD LINE L1 -489 5753 5678 5 1220 42 36 0 0 chr1 83345700 83345756 -113849676 + AT_rich Low_complexity Low_complexity 1 56 0 5 1220 1727 300 82 71 chr1 83345875 83346452 -113848980 + Lx8 LINE L1 6251 6793 -680 5 1220 477 304 36 60 chr1 83346452 83346620 -113848812 - RSINE1 SINE B4 0 165 2 5 1220 1727 300 82 71 chr1 83346620 83347246 -113848186 + Lx8 LINE L1 6794 7468 -5 5 1220 335 331 73 22 chr1 83347638 83347817 -113847615 - L2a LINE L2 -281 3145 2958 5 1220 709 352 63 6 chr1 83348727 83349061 -113846371 + LTR80B LTR ERVL 151 503 -81 5 1220 297 0 0 0 chr1 83349514 83349547 -113845885 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1220 1930 22 0 0 chr1 83349909 83350141 -113845291 - L1Md_T LINE L1 -213 6369 6138 5 1220 1399 40 14 79 chr1 83350141 83350357 -113845075 + L1Md_F3 LINE L1 6383 6584 0 5 1220 1315 173 5 0 chr1 83350378 83350598 -113844834 - URR1B DNA MER1_type -4 221 1 5 1220 875 242 35 15 chr1 83352008 83352205 -113843227 - B3 SINE B2 -10 206 6 5 1220 205 245 0 0 chr1 83353750 83353799 -113841633 + GA-rich Low_complexity Low_complexity 3 51 0 5 1220 506 178 89 0 chr1 83354073 83354163 -113841269 + B4 SINE B4 107 204 -88 5 1220 227 114 0 22 chr1 83354210 83354255 -113841177 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1220 492 18 0 0 chr1 83354996 83355053 -113840379 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1220 252 352 111 0 chr1 83355057 83355165 -113840267 - PB1 SINE Alu -3 124 5 5 1220 403 322 0 38 chr1 83355524 83355692 -113839740 - B4A SINE B4 -69 155 1 5 1220 695 162 13 25 chr1 83355955 83356113 -113839319 - Lx6 LINE L1 -1 7459 7304 5 1220 277 279 0 12 chr1 83356317 83356397 -113839035 + MADE2 DNA Mariner 1 79 -1 5 1220 585 330 27 22 chr1 83356889 83357112 -113838320 - MIR SINE MIR -15 247 24 5 1220 237 312 105 18 chr1 83357481 83357595 -113837837 + ORR1E LTR MaLR 19 142 -217 5 1220 297 0 0 0 chr1 83357961 83357994 -113837438 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1220 641 127 30 0 chr1 83357994 83358128 -113837304 + (TA)n Simple_repeat Simple_repeat 2 139 0 5 1220 470 119 0 0 chr1 83359811 83359823 -113835609 + B1_Mus2 SINE Alu 68 79 -68 5 1220 1259 67 72 11 chr1 83359823 83360004 -113835428 - B2_Mm2 SINE B2 -1 194 3 5 1220 470 119 0 0 chr1 83360004 83360058 -113835374 + B1_Mus2 SINE Alu 80 133 -14 5 1220 630 71 0 0 chr1 83360059 83360143 -113835289 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 5 1221 291 325 74 74 chr1 83362083 83362246 -113833186 + MER5A1 DNA MER1_type 3 165 -1 5 1221 3786 55 8 0 chr1 83362300 83362775 -113832657 - L1Md_F2 LINE L1 0 6582 6104 5 1221 510 328 134 48 chr1 83363860 83363976 -113831456 + MER31B LTR ERV1 18 145 -321 5 1221 945 118 94 61 chr1 83363976 83364157 -113831275 - B2_Mm2 SINE B2 -7 188 2 5 1221 510 328 134 48 chr1 83364157 83364434 -113830998 + MER31B LTR ERV1 146 445 -21 5 1221 34921 28 2 8 chr1 83366258 83371444 -113823988 + L1Md_T LINE L1 439 5586 -297 5 1221 8428 37 0 0 chr1 83371444 83372484 -113822948 + L1Md_T LINE L1 5587 6582 0 5 1221 776 158 25 0 chr1 83372827 83372985 -113822447 - Lx4B LINE L1 -828 6230 6069 6 1221 1289 115 18 0 chr1 83372988 83373205 -113822227 + Lx4B LINE L1 5772 5992 -1066 6 1221 212 0 36 0 chr1 83373820 83373848 -113821584 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1221 1046 108 0 0 chr1 83373848 83373988 -113821444 - B1_Mus1 SINE Alu -7 141 2 6 1221 1182 286 59 14 chr1 83374480 83374834 -113820598 + ORR1D1 LTR MaLR 1 370 -4 6 1221 522 235 94 14 chr1 83374869 83375007 -113820425 + B1_Mur1 SINE Alu 1 149 0 6 1221 410 366 80 39 chr1 83375257 83375852 -113819580 + L2a LINE L2 2802 3421 -5 6 1221 673 279 41 53 chr1 83377366 83377707 -113817725 - L1MC1 LINE L1 0 6333 5997 6 1221 182 62 0 30 chr1 83377820 83377853 -113817579 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1221 1161 125 10 2 chr1 83378569 83378782 -113816650 + Lx LINE L1 5575 5793 -331 6 1221 846 38 0 0 chr1 83378793 83378899 -113816533 - B1_Mus2 SINE Alu 0 147 42 6 1221 271 158 112 56 chr1 83378836 83378943 -113816489 - RLTR25B LTR ERVK -519 509 397 6 1221 636 191 0 18 chr1 83378968 83379399 -113816033 + CT-rich Low_complexity Low_complexity 1 423 0 6 1221 388 117 0 32 chr1 83379468 83379530 -113815902 - B1_Mus1 SINE Alu -88 60 1 6 1221 6080 92 13 5 chr1 83379536 83380412 -113815020 + Lx LINE L1 5750 6632 -22 6 1221 228 35 0 0 chr1 83380427 83380456 -113814976 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1221 342 259 169 54 chr1 83382327 83382511 -113812921 - L1MEg LINE L1 -4661 1423 1219 6 1221 573 276 43 57 chr1 83382635 83382846 -113812586 + B3 SINE B2 4 211 -5 6 1221 3092 47 10 3 chr1 83382921 83383309 -113812123 + L1Md_F2 LINE L1 6190 6580 -2 6 1221 231 125 0 0 chr1 83384103 83384143 -113811289 - Lx4B LINE L1 0 7058 7019 6 1221 1163 278 13 16 chr1 83384319 83384699 -113810733 + Lx6 LINE L1 7056 7434 -26 6 1221 432 0 0 0 chr1 83384701 83384749 -113810683 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1221 482 291 47 16 chr1 83386857 83386986 -113808446 + ETnERV2-int LTR ERVK 7070 7202 -204 6 1221 283 30 0 0 chr1 83387561 83387594 -113807838 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1221 703 215 6 6 chr1 83387594 83387772 -113807660 + CT-rich Low_complexity Low_complexity 1 178 0 6 1221 742 224 11 17 chr1 83387772 83387949 -113807483 - B2_Mm2 SINE B2 -19 176 1 6 1221 754 150 38 20 chr1 83388946 83389296 -113806136 + (CA)n Simple_repeat Simple_repeat 1 356 0 6 1221 420 154 19 9 chr1 83389320 83389425 -113806007 + (CA)n Simple_repeat Simple_repeat 2 107 0 6 1221 220 27 26 26 chr1 83389774 83389812 -113805620 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1221 572 303 79 5 chr1 83390193 83390307 -113805125 - MER67C LTR ERV1 -337 374 248 6 1221 384 40 0 0 chr1 83390307 83390357 -113805075 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1221 572 303 79 5 chr1 83390357 83390431 -113805001 - MER67C LTR ERV1 -464 247 173 6 1221 966 133 147 44 chr1 83390729 83390933 -113804499 + URR1B DNA MER1_type 1 225 0 6 1221 1634 219 82 3 chr1 83390945 83391325 -113804107 + Lx9 LINE L1 6316 6725 -919 6 1221 680 319 74 21 chr1 83392626 83392657 -113802775 - RMER15 LTR ERVL 0 575 542 6 1221 381 22 0 0 chr1 83392657 83392703 -113802729 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1221 680 319 74 21 chr1 83392703 83392956 -113802476 - RMER15 LTR ERVL -34 541 277 6 1221 202 289 0 0 chr1 83393205 83393250 -113802182 + polypyrimidine Low_complexity Low_complexity 3 47 0 6 1221 315 0 0 0 chr1 83393632 83393667 -113801765 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1221 545 321 112 69 chr1 83394190 83394629 -113800803 + MLT1D LTR MaLR 3 458 -47 6 1221 702 350 53 19 chr1 83394777 83395039 -113800393 + ORR1E LTR MaLR 1 271 -88 6 1221 399 280 93 21 chr1 83395128 83395325 -113800107 + L1MCb LINE L1 1329 1538 -4884 6 1221 255 236 68 16 chr1 83395402 83395618 -113799814 + L1MCb LINE L1 1955 2199 -4838 6 1221 44 46 0 0 chr1 83396065 83396130 -113799302 + AT_rich Low_complexity Low_complexity 1 65 0 6 1221 629 305 72 52 chr1 83396130 83396686 -113798746 + Lx9 LINE L1 4999 5525 -355 6 1221 3354 35 2 5 chr1 83396686 83397087 -113798345 - MTB LTR MaLR 0 400 1 6 1221 629 304 78 56 chr1 83397087 83397119 -113798313 + Lx9 LINE L1 5526 5550 -330 6 1221 1457 78 5 0 chr1 83397119 83397310 -113798122 - B2_Mm1t SINE B2 0 193 2 6 1221 629 284 103 34 chr1 83397310 83397640 -113797792 + Lx9 LINE L1 5551 5905 -1739 6 1221 465 19 0 0 chr1 83397647 83397701 -113797731 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1221 233 265 0 0 chr1 83398016 83398065 -113797367 + L1MCb LINE L1 2364 2412 -4625 6 1221 264 311 37 46 chr1 83398306 83398522 -113796910 + L1MCb LINE L1 2682 2895 -4127 6 1221 1196 54 7 0 chr1 83398583 83398730 -113796702 + B1_Mus1 SINE Alu 1 148 0 6 1221 492 18 0 0 chr1 83398741 83398798 -113796634 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1221 187 274 181 26 chr1 83399052 83399168 -113796264 - MIR SINE MIR -62 200 67 6 1221 432 0 0 0 chr1 83400029 83400077 -113795355 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1221 289 330 17 0 chr1 83400341 83400456 -113794976 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1221 548 152 28 62 chr1 83400644 83400820 -113794612 + RMER17C LTR ERVK 98 267 -143 6 1221 215 304 31 42 chr1 83401126 83401222 -113794210 + MIRc SINE MIR 152 246 -22 6 1221 1077 43 0 0 chr1 83401607 83401748 -113793684 + L1Md_A LINE L1 6442 6582 0 6 1221 32 26 0 0 chr1 83402779 83402818 -113792614 + AT_rich Low_complexity Low_complexity 1 39 0 6 1221 238 290 0 55 chr1 83402873 83402946 -113792486 - ID4_ SINE ID -13 70 2 6 1221 195 114 0 0 chr1 83403501 83403536 -113791896 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 6 1221 320 333 108 6 chr1 83405460 83405617 -113789815 + L1MD1 LINE L1 16 188 -6445 6 1221 232 352 117 19 chr1 83405620 83405886 -113789546 + L1MD1 LINE L1 304 595 -6038 6 1221 365 297 151 38 chr1 83406163 83406401 -113789031 + L1MD1 LINE L1 943 1207 -5426 6 1221 367 282 138 40 chr1 83406773 83406998 -113788434 + L1MD1 LINE L1 3261 3507 -3030 6 1221 265 360 56 44 chr1 83407003 83407183 -113788249 + B4 SINE B4 1 182 -110 6 1221 2337 59 0 0 chr1 83407246 83407553 -113787879 - L1Md_F2 LINE L1 -461 6121 5815 6 1221 3344 68 2 18 chr1 83407553 83408004 -113787428 + L1Md_F2 LINE L1 6137 6580 -2 6 1221 201 138 0 0 chr1 83408022 83408051 -113787381 + (ATGGTG)n Simple_repeat Simple_repeat 4 32 0 6 1221 275 265 75 8 chr1 83408051 83408184 -113787248 + L1MD1 LINE L1 3575 3716 -2821 6 1221 365 363 70 73 chr1 83408211 83408526 -113786906 + MLT1C LTR MaLR 146 459 -8 6 1221 718 286 93 114 chr1 83408579 83408678 -113786754 + L1MD1 LINE L1 3851 3945 -2592 6 1221 2244 119 23 26 chr1 83408678 83409023 -113786409 + Lx4A LINE L1 6715 7058 0 6 1221 718 286 93 114 chr1 83409023 83409250 -113786182 + L1MD1 LINE L1 3946 4173 -2364 6 1221 369 0 0 0 chr1 83409250 83409291 -113786141 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1221 667 246 56 45 chr1 83409300 83409479 -113785953 - B3A SINE B2 -16 182 2 6 1221 718 286 93 114 chr1 83409479 83409882 -113785550 + L1MD1 LINE L1 4182 4597 -1940 6 1221 417 121 0 0 chr1 83409882 83409965 -113785467 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1221 718 286 93 114 chr1 83409965 83409981 -113785451 + L1MD1 LINE L1 4598 4613 -1924 6 1221 252 279 58 14 chr1 83409981 83410050 -113785382 - PB1D10 SINE Alu -41 76 5 6 1221 718 286 93 114 chr1 83410050 83410714 -113784718 + L1MD1 LINE L1 4614 5309 -1228 6 1221 6693 79 61 14 chr1 83410748 83411946 -113783486 + L1_Mus3 LINE L1 5379 6632 -6 6 1221 1074 92 0 12 chr1 83411958 83412124 -113783308 + L1Md_F2 LINE L1 6416 6579 -3 6 1221 501 311 83 34 chr1 83412160 83413043 -113782389 + L1MD1 LINE L1 5387 6321 -312 6 1221 373 288 55 55 chr1 83413137 83413302 -113782130 + L1MD1 LINE L1 6451 6615 -18 6 1221 744 292 19 24 chr1 83413332 83413539 -113781893 - B3 SINE B2 -10 206 1 6 1221 327 104 0 0 chr1 83413635 83413683 -113781749 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1221 354 23 0 0 chr1 83413711 83413754 -113781678 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1221 396 40 0 0 chr1 83413754 83413803 -113781629 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1221 624 325 61 27 chr1 83414119 83414381 -113781051 + B4A SINE B4 10 280 -12 6 1221 881 303 71 145 chr1 83414404 83414914 -113780518 - MLT1E2 LTR MaLR -124 503 4 6 1221 379 351 108 69 chr1 83415137 83415526 -113779906 - MLT1A1 LTR MaLR 0 408 5 6 1221 711 11 0 0 chr1 83415724 83415813 -113779619 + L1Md_A LINE L1 6492 6580 -2 6 1221 23 0 0 0 chr1 83417485 83417508 -113777924 + AT_rich Low_complexity Low_complexity 1 23 0 6 1221 20750 54 22 4 chr1 83417508 83421029 -113774403 - L1Md_F3 LINE L1 -3 6581 3013 6 1221 22 0 0 0 chr1 83421808 83421830 -113773602 + AT_rich Low_complexity Low_complexity 1 22 0 6 1221 626 302 60 53 chr1 83422152 83422618 -113772814 - MLT1D LTR MaLR 0 627 1 6 1221 1151 37 0 0 chr1 83422651 83422785 -113772647 + B1_Mm SINE Alu 1 134 -13 6 1221 472 298 124 27 chr1 83425380 83425711 -113769721 + MLT1A0 LTR MaLR 1 363 -2 6 1221 297 351 99 0 chr1 83427158 83427269 -113768163 - RSINE1 SINE B4 0 165 44 6 1221 308 346 130 9 chr1 83427492 83427600 -113767832 + RSINE1 SINE B4 3 123 -42 6 1221 21 71 0 0 chr1 83427620 83427662 -113767770 + AT_rich Low_complexity Low_complexity 1 42 0 6 1221 180 289 108 32 chr1 83427943 83428036 -113767396 - MIRb SINE MIR -149 119 20 6 1221 510 46 0 0 chr1 83428060 83428125 -113767307 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1221 216 0 0 0 chr1 83428587 83428611 -113766821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1221 252 111 0 0 chr1 83430923 83430968 -113764464 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1221 6554 42 0 5 chr1 83431107 83431900 -113763532 - L1Md_F2 LINE L1 -12 6570 5782 6 1221 214 266 63 0 chr1 83432264 83432343 -113763089 + CT-rich Low_complexity Low_complexity 4 87 0 6 1221 268 305 0 0 chr1 83432384 83432443 -113762989 - B1F2 SINE Alu -90 59 1 6 1221 1952 98 0 24 chr1 83432594 83432888 -113762544 + L1_Mus4 LINE L1 6350 6636 0 6 1221 23 68 0 0 chr1 83432973 83433017 -113762415 + AT_rich Low_complexity Low_complexity 1 44 0 6 1221 459 63 0 0 chr1 83434199 83434262 -113761170 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1221 615 224 0 0 chr1 83434316 83434571 -113760861 + (CA)n Simple_repeat Simple_repeat 1 255 0 6 1221 543 85 0 0 chr1 83434589 83434671 -113760761 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 1221 347 274 10 0 chr1 83434680 83434782 -113760650 - Lx7 LINE L1 -1957 5739 5637 6 1221 414 0 0 0 chr1 83435693 83435739 -113759693 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1221 312 27 0 0 chr1 83435739 83435776 -113759656 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1221 247 324 0 108 chr1 83435777 83435860 -113759572 - RSINE1 SINE B4 -15 150 77 6 1221 489 267 81 12 chr1 83435945 83436203 -113759229 - L1MA8 LINE L1 -27 6264 5989 6 1221 611 216 72 125 chr1 83436223 83436640 -113758792 - L1MA8 LINE L1 -579 5712 5318 6 1221 238 233 0 0 chr1 83436676 83436719 -113758713 - tRNA-Ala-GCY_ tRNA tRNA -31 44 2 6 1221 23 33 0 0 chr1 83436736 83436766 -113758666 + AT_rich Low_complexity Low_complexity 1 30 0 6 1221 621 236 31 8 chr1 83436823 83436951 -113758481 - B3A SINE B2 -67 131 1 7 1221 4127 112 46 5 chr1 83436978 83437614 -113757818 + Lx LINE L1 5986 6647 -7 7 1221 423 274 19 76 chr1 83437739 83437897 -113757535 - RSINE1 SINE B4 -15 150 2 7 1221 435 247 34 7 chr1 83437899 83438046 -113757386 - L1MA8 LINE L1 -884 5259 5109 6 1221 31744 73 3 4 chr1 83439101 83443218 -113752214 - L1Md_F2 LINE L1 -13 6569 2459 7 1221 2518 62 224 3 chr1 83443218 83443575 -113751857 + RLTR10C LTR ERVK 1 436 0 7 1221 31744 90 28 5 chr1 83443575 83445438 -113749994 - L1Md_F2 LINE L1 -3425 2458 550 7 1221 29 60 0 0 chr1 83445983 83446033 -113749399 + AT_rich Low_complexity Low_complexity 1 50 0 7 1221 23 0 0 0 chr1 83446187 83446210 -113749222 + AT_rich Low_complexity Low_complexity 1 23 0 7 1221 260 232 154 35 chr1 83446635 83446778 -113748654 - MER97c DNA MER1_type? -749 341 182 7 1221 635 135 8 0 chr1 83446800 83446933 -113748499 + (TC)n Simple_repeat Simple_repeat 2 135 0 7 1221 201 74 0 0 chr1 83447557 83447584 -113747848 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1221 466 306 130 73 chr1 83447617 83447864 -113747568 - B4A SINE B4 -28 264 4 7 1221 181 138 0 0 chr1 83448245 83448274 -113747158 + MIRc SINE MIR 125 153 -115 7 1221 2320 65 0 42 chr1 83448307 83448663 -113746769 - L1_Mm LINE L1 -1725 4158 3818 7 1221 2248 81 55 32 chr1 83448663 83449007 -113746425 + L1Md_F2 LINE L1 6219 6570 -12 7 1221 270 286 0 0 chr1 83449035 83449084 -113746348 + PB1 SINE Alu 12 60 -67 7 1221 226 283 0 118 chr1 83449084 83449103 -113746329 + ID_B1 SINE B4 93 152 -72 7 1221 254 29 0 28 chr1 83449105 83449141 -113746291 + (CATA)n Simple_repeat Simple_repeat 4 38 0 7 1221 1649 87 7 63 chr1 83449245 83449516 -113745916 - L1Md_F2 LINE L1 0 6582 6327 7 1221 38 22 0 0 chr1 83450598 83450643 -113744789 + AT_rich Low_complexity Low_complexity 1 45 0 7 1221 492 224 9 12 chr1 83450767 83450875 -113744557 + B1_Mur3 SINE Alu 14 143 -6 7 1221 417 39 0 0 chr1 83450875 83450926 -113744506 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1221 327 182 0 0 chr1 83451494 83451549 -113743883 - B3A SINE B2 -143 55 1 7 1221 207 0 0 0 chr1 83451657 83451680 -113743752 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 7 1221 1791 298 72 65 chr1 83452992 83453256 -113742176 - L1Md_A LINE L1 -2 6971 6701 7 1221 315 0 0 0 chr1 83453256 83453291 -113742141 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1221 39414 9 1 1 chr1 83453291 83459985 -113735447 - L1Md_A LINE L1 -273 6700 4 7 1221 502 296 35 0 chr1 83461060 83461175 -113734257 - PB1D9 SINE Alu -1 119 1 7 1221 850 283 63 12 chr1 83461228 83461646 -113733786 + MLT2B2 LTR ERVL 14 561 -1 7 1221 522 0 0 0 chr1 83461693 83461751 -113733681 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1221 200 195 0 0 chr1 83463061 83463102 -113732330 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1221 1006 196 14 9 chr1 83463144 83463355 -113732077 - Lx5 LINE L1 -2 7048 6837 7 1221 2266 29 0 0 chr1 83463355 83463631 -113731801 + L1Md_F2 LINE L1 5311 5586 -297 7 1221 7980 51 1 2 chr1 83463631 83464616 -113730816 + L1Md_F2 LINE L1 5587 6570 -12 7 1221 1803 191 54 6 chr1 83464652 83465005 -113730427 - Lx5 LINE L1 -283 6767 6398 7 1221 4369 104 11 3 chr1 83465021 83465656 -113729776 + Lx3_Mus LINE L1 6359 6998 -11 7 1221 498 294 36 9 chr1 83465751 83465971 -113729461 + Lx9 LINE L1 7246 7471 -173 7 1221 290 306 49 39 chr1 83466778 83467004 -113728428 - L1M5 LINE L1 -661 5579 5352 7 1221 643 320 5 27 chr1 83467037 83467223 -113728209 + B3A SINE B2 1 182 -16 7 1221 381 22 0 0 chr1 83467237 83467283 -113728149 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1221 339 0 59 0 chr1 83468057 83468108 -113727324 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 7 1221 1073 259 56 47 chr1 83468557 83468788 -113726644 - L1_Mur3 LINE L1 -813 5067 4819 7 1221 504 0 0 0 chr1 83468788 83468844 -113726588 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 7 1221 1073 259 56 47 chr1 83468844 83469078 -113726354 - L1_Mur3 LINE L1 -1062 4818 4598 7 1221 576 287 30 19 chr1 83469100 83469366 -113726066 + L1_Mur3 LINE L1 5075 5343 -537 7 1221 441 0 0 0 chr1 83469422 83469471 -113725961 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1221 591 263 73 33 chr1 83469473 83469748 -113725684 + Lx8 LINE L1 6201 6486 -987 7 1221 940 312 36 41 chr1 83469759 83470200 -113725232 + Lx8 LINE L1 6555 6993 -480 7 1221 248 377 61 25 chr1 83470423 83470619 -113724813 - MIR SINE MIR -28 234 32 7 1221 241 329 14 0 chr1 83470645 83470718 -113724714 - ID4_ SINE ID -2 81 8 7 1221 1098 301 99 30 chr1 83471178 83471396 -113724036 + RMER5 LTR ERV1 1 236 -298 7 1221 183 42 0 0 chr1 83471396 83471420 -113724012 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 7 1221 1098 301 99 30 chr1 83471420 83471694 -113723738 + RMER5 LTR ERV1 237 526 -8 7 1221 2148 137 87 3 chr1 83472278 83472481 -113722951 - BGLII_Mus LTR ERVK 0 422 218 7 1221 655 44 22 0 chr1 83472481 83472572 -113722860 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 1221 2148 137 87 3 chr1 83472572 83472757 -113722675 - BGLII_Mus LTR ERVK -205 217 2 7 1221 5004 56 10 24 chr1 83472763 83473435 -113721997 - L1Md_F2 LINE L1 -1 6581 5919 7 1221 4037 71 0 0 chr1 83473436 83473986 -113721446 + L1_Mm LINE L1 4700 5249 -634 7 1221 244 349 24 110 chr1 83474166 83474330 -113721102 + MER5A DNA MER1_type 8 157 -32 7 1221 2304 74 6 6 chr1 83474427 83474812 -113720620 - L1Md_F2 LINE L1 0 6582 6253 7 1221 307 362 161 29 chr1 83475796 83476137 -113719295 - MER68 LTR ERVL -6 557 172 7 1221 1325 253 47 33 chr1 83477817 83478267 -113717165 + Lx8 LINE L1 6886 7341 -132 7 1221 752 275 15 3 chr1 83478447 83478621 -113716811 + B3A SINE B2 1 183 -33 7 1221 216 160 0 39 chr1 83478633 83478685 -113716747 + A-rich Low_complexity Low_complexity 1 50 0 7 1221 3977 77 7 7 chr1 83479830 83480377 -113715055 + L1_Mus3 LINE L1 6092 6638 0 7 1221 286 294 38 92 chr1 83480901 83481032 -113714400 - B1F1 SINE Alu -1 148 25 7 1221 266 345 85 90 chr1 83481032 83481124 -113714308 - ID_B1 SINE B4 -1 223 2 7 1221 332 355 27 21 chr1 83481937 83482278 -113713154 - L1ME2 LINE L1 -239 5925 5579 7 1221 62 44 0 0 chr1 83482380 83482470 -113712962 + AT_rich Low_complexity Low_complexity 1 90 0 7 1221 454 273 56 28 chr1 83482635 83482850 -113712582 - L1_Mur3 LINE L1 -1652 4228 4008 7 1221 559 356 92 60 chr1 83483041 83483322 -113712110 + B4A SINE B4 3 292 0 7 1221 245 247 54 43 chr1 83483405 83483498 -113711934 - B3A SINE B2 -104 94 1 7 1221 6312 168 61 10 chr1 83483918 83486168 -113709264 - Lx5 LINE L1 -1 7049 4666 7 1221 196 403 15 0 chr1 83486861 83486928 -113708504 - MIR SINE MIR -184 78 11 7 1221 1263 159 26 17 chr1 83487455 83487685 -113707747 - ORR1D1 LTR MaLR 0 374 143 7 1221 205 254 46 29 chr1 83487735 83487909 -113707523 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 7 1221 410 191 74 6 chr1 83487946 83488065 -113707367 + (TCTA)n Simple_repeat Simple_repeat 1 129 0 7 1221 3651 91 29 10 chr1 83488065 83488588 -113706844 - L1_Mus4 LINE L1 -2 6634 6102 7 1221 410 191 74 6 chr1 83488588 83488631 -113706801 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 7 1221 22 80 0 0 chr1 83488643 83488693 -113706739 + AT_rich Low_complexity Low_complexity 1 50 0 7 1221 4306 166 62 78 chr1 83489630 83490535 -113704897 + RMER19B LTR ERVK 1 890 -12 7 1221 435 68 0 0 chr1 83490572 83490631 -113704801 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1221 406 0 37 0 chr1 83490949 83491003 -113704429 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 7 1221 898 259 24 10 chr1 83491011 83491218 -113704214 + B3 SINE B2 7 216 0 7 1221 430 347 101 37 chr1 83491325 83491621 -113703811 + Arthur1 DNA Tip100 76 390 -3557 7 1222 257 322 91 32 chr1 83493028 83493102 -113702330 + B4A SINE B4 124 199 -93 7 1222 359 73 0 18 chr1 83493102 83493158 -113702274 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1222 257 322 91 32 chr1 83493158 83493237 -113702195 + B4A SINE B4 200 286 -6 7 1222 41 36 0 0 chr1 83494183 83494238 -113701194 + AT_rich Low_complexity Low_complexity 1 55 0 7 1222 1121 75 7 0 chr1 83494239 83494386 -113701046 - B1_Mus1 SINE Alu 0 148 1 7 1222 886 331 29 11 chr1 83494984 83495265 -113700167 - B4 SINE B4 -4 288 3 7 1222 303 85 0 0 chr1 83495386 83495433 -113699999 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 7 1222 7567 60 0 3 chr1 83496038 83497500 -113697932 - L1Md_F2 LINE L1 -10 6572 5114 7 1222 6070 80 1 2 chr1 83497498 83498358 -113697074 + L1Md_F2 LINE L1 4283 5141 -742 7 1222 1283 244 57 14 chr1 83498769 83499123 -113696309 + ORR1D2 LTR MaLR 2 370 0 7 1222 414 0 0 0 chr1 83499177 83499223 -113696209 + (TTA)n Simple_repeat Simple_repeat 3 48 0 7 1222 1367 43 59 0 chr1 83499223 83499409 -113696023 - L1Md_F3 LINE L1 -27 6557 6361 7 1222 1962 99 61 15 chr1 83499672 83500000 -113695432 - L1_Mus3 LINE L1 -7 6631 6289 7 1222 2466 93 0 24 chr1 83500000 83500373 -113695059 - L1_Mus3 LINE L1 -350 6288 5925 1 1222 484 302 48 19 chr1 83501490 83501696 -113693736 - MIR SINE MIR -19 243 32 2 1222 25 51 0 0 chr1 83502630 83502669 -113692763 + AT_rich Low_complexity Low_complexity 1 39 0 3 1222 234 416 81 13 chr1 83502961 83503195 -113692237 + B4 SINE B4 27 276 -16 4 1222 345 47 0 0 chr1 83503243 83503286 -113692146 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1222 258 281 140 59 chr1 83503982 83504118 -113691314 + MLT1D LTR MaLR 1 147 -358 6 1222 190 355 94 24 chr1 83504338 83504465 -113690967 - L2a LINE L2 -4 3422 3287 7 1222 271 264 0 14 chr1 83504707 83504780 -113690652 + MLT1A0 LTR MaLR 16 87 -278 8 1222 1868 137 9 37 chr1 83505140 83505465 -113689967 + Lx LINE L1 6326 6641 -13 9 1222 1962 127 53 0 chr1 83505465 83505788 -113689644 + Lx3_Mus LINE L1 6647 6986 -23 1 1222 189 0 0 0 chr1 83505788 83505809 -113689623 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 1222 668 280 134 8 chr1 83505846 83506084 -113689348 + MLT1A0 LTR MaLR 98 365 0 8 1222 347 286 66 0 chr1 83506898 83506989 -113688443 - PB1D10 SINE Alu -7 110 14 1 1222 1135 88 0 0 chr1 83507166 83507314 -113688118 - B1_Mus1 SINE Alu 0 148 1 1 1222 255 299 24 60 chr1 83507336 83507429 -113688003 - B1F1 SINE Alu -47 102 13 1 1222 36585 43 13 15 chr1 83507612 83513485 -113681947 - L1Md_T LINE L1 0 6585 585 1 1222 226 316 59 59 chr1 83513485 83513586 -113681846 - RLTR45 LTR ERVK -378 104 4 1 1222 36585 43 13 15 chr1 83513586 83514083 -113681349 - L1Md_T LINE L1 0 584 76 1 1222 988 230 24 5 chr1 83514183 83514388 -113681044 + B3 SINE B2 2 210 -6 1 1222 368 97 16 0 chr1 83514431 83514493 -113680939 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1222 968 152 0 11 chr1 83514531 83514711 -113680721 + CT-rich Low_complexity Low_complexity 2 179 0 1 1222 312 137 0 0 chr1 83514970 83515021 -113680411 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2 1222 7798 89 22 0 chr1 83515676 83517431 -113678001 + MusHAL1 LINE L1 53 1847 -1506 2 1222 7011 118 3 14 chr1 83517427 83519147 -113676285 + L1_Mus4 LINE L1 4936 6636 0 2 1222 1556 37 0 21 chr1 83519530 83519721 -113675711 - B2_Mm1a SINE B2 -6 187 1 2 1222 267 31 0 0 chr1 83520515 83520547 -113674885 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1222 265 370 66 24 chr1 83521253 83521411 -113674021 + LTR41 LTR ERVL 2 166 -602 2 1222 995 184 6 0 chr1 83521411 83521589 -113673843 + CT-rich Low_complexity Low_complexity 1 182 -143 2 1222 995 184 6 0 chr1 83521596 83521734 -113673698 + CT-rich Low_complexity Low_complexity 183 325 0 2 1222 23 68 0 0 chr1 83522427 83522471 -113672961 + AT_rich Low_complexity Low_complexity 1 44 0 2 1222 1325 259 17 135 chr1 83522472 83522945 -113672487 + MTD LTR MaLR 1 417 -2 2 1222 2910 86 8 0 chr1 83523916 83524313 -113671119 - MTB LTR MaLR 0 400 1 2 1222 880 74 0 16 chr1 83524773 83524896 -113670536 - MTA_Mm LTR MaLR -275 121 1 3 1222 3527 265 52 15 chr1 83525893 83526911 -113668521 - Lx6 LINE L1 -4 7456 6401 3 1222 476 16 0 45 chr1 83526969 83527035 -113668397 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 3 1222 3240 263 39 35 chr1 83527066 83528404 -113667028 - RMER1A Other Other 0 1030 2 3 1222 360 0 0 0 chr1 83528633 83528673 -113666759 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1222 231 355 0 0 chr1 83529258 83529334 -113666098 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1222 485 329 25 62 chr1 83529336 83529498 -113665934 - RSINE1 SINE B4 0 165 10 3 1222 37 23 0 0 chr1 83529506 83529550 -113665882 + AT_rich Low_complexity Low_complexity 1 44 0 3 1222 232 319 126 46 chr1 83530045 83530196 -113665236 + MTEa LTR MaLR 55 217 -162 3 1222 1869 211 48 8 chr1 83530207 83530604 -113664828 + MTD LTR MaLR 1 413 -6 3 1222 304 229 40 30 chr1 83530667 83530766 -113664666 + MTEa LTR MaLR 280 379 0 3 1222 397 328 75 105 chr1 83530795 83531156 -113664276 - ORR1E LTR MaLR -7 352 3 4 1222 606 300 39 69 chr1 83531587 83531791 -113663641 - B3A SINE B2 0 198 1 4 1222 498 273 33 120 chr1 83532192 83532375 -113663057 - RMER20A LTR ERVK -348 168 2 4 1222 220 122 20 39 chr1 83532478 83532529 -113662903 + T-rich Low_complexity Low_complexity 4 53 0 4 1222 460 339 70 5 chr1 83532717 83532904 -113662528 - B4A SINE B4 -91 201 3 4 1222 21 0 0 0 chr1 83533746 83533767 -113661665 + AT_rich Low_complexity Low_complexity 1 21 0 4 1222 3015 156 107 28 chr1 83533801 83534439 -113660993 - RMER6C LTR ERVK -2 688 1 4 1222 22 35 0 0 chr1 83534485 83534514 -113660918 + AT_rich Low_complexity Low_complexity 1 29 0 4 1222 46 54 0 0 chr1 83534524 83534598 -113660834 + AT_rich Low_complexity Low_complexity 1 74 0 4 1222 225 317 114 25 chr1 83535151 83535387 -113660045 - L1M4 LINE L1 -1803 4343 4087 4 1222 1207 202 91 75 chr1 83535801 83535980 -113659452 - ORR1C2 LTR MaLR 0 384 199 5 1222 225 0 0 0 chr1 83535980 83536005 -113659427 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1222 993 87 41 0 chr1 83536008 83536180 -113659252 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1222 1207 202 91 75 chr1 83536180 83536370 -113659062 - ORR1C2 LTR MaLR -186 198 15 5 1222 22 35 0 0 chr1 83536608 83536637 -113658795 + AT_rich Low_complexity Low_complexity 1 29 0 5 1222 425 263 134 0 chr1 83536652 83536831 -113658601 + L1MD LINE L1 3786 3988 -2158 5 1222 225 288 29 132 chr1 83536940 83537076 -113658356 + Arthur1C DNA Tip100 82 203 -160 5 1222 274 205 74 41 chr1 83537115 83537237 -113658195 + L1MD LINE L1 4333 4458 -1688 5 1222 185 65 32 0 chr1 83537262 83537293 -113658139 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1222 333 312 86 71 chr1 83537293 83537592 -113657840 - B4A SINE B4 -11 281 3 5 1222 285 275 54 0 chr1 83537593 83537742 -113657690 + L1MD LINE L1 4455 4611 -1535 5 1222 628 236 0 8 chr1 83537973 83538101 -113657331 - B1_Mus1 SINE Alu -21 127 1 5 1222 361 311 87 0 chr1 83538166 83538269 -113657163 + B3 SINE B2 78 189 -27 5 1222 495 0 0 0 chr1 83538270 83538325 -113657107 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1222 180 0 0 0 chr1 83540733 83540753 -113654679 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1222 3113 44 18 0 chr1 83541286 83541676 -113653756 + MTB LTR MaLR 1 397 -3 6 1222 3270 79 4 0 chr1 83541676 83542134 -113653298 - L1_Mus3 LINE L1 -248 6318 5859 6 1222 1557 112 42 8 chr1 83542142 83542404 -113653028 + L1_Mus3 LINE L1 6341 6611 -27 6 1222 958 119 67 92 chr1 83542404 83542551 -113652881 + B2_Mm2 SINE B2 1 159 -36 6 1222 387 0 0 0 chr1 83542551 83542594 -113652838 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 1222 958 119 67 92 chr1 83542594 83542641 -113652791 + B2_Mm2 SINE B2 160 190 -5 6 1222 396 0 0 0 chr1 83542927 83542971 -113652461 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1222 468 86 0 0 chr1 83543498 83543568 -113651864 + (CACCAT)n Simple_repeat Simple_repeat 5 74 0 6 1222 1004 171 9 22 chr1 83544421 83544643 -113650789 - Lx4B LINE L1 -29 7029 6811 6 1222 4284 140 74 3 chr1 83546199 83546887 -113648545 + RMER19A LTR ERVK 1 737 0 6 1222 460 365 0 0 chr1 83547077 83547274 -113648158 + Lx8 LINE L1 6398 6594 -879 7 1222 24 32 0 0 chr1 83548589 83548620 -113646812 + AT_rich Low_complexity Low_complexity 1 31 0 7 1222 6527 118 33 4 chr1 83548621 83549639 -113645793 - Lx3A LINE L1 -9 6972 5925 7 1222 288 298 17 92 chr1 83550361 83550535 -113644897 - RMER16 LTR ERVK -85 448 288 7 1222 1896 112 59 7 chr1 83550553 83550859 -113644573 + RLTRETN_Mm LTR ERVK 1 322 0 7 1222 250 212 42 115 chr1 83550890 83550986 -113644446 - RMER16 LTR ERVK -444 89 1 7 1222 4076 203 25 12 chr1 83550986 83551818 -113643614 + Lx5 LINE L1 6205 7047 -3 7 1222 227 208 21 0 chr1 83551942 83551990 -113643442 + MIR SINE MIR 204 252 -10 7 1222 748 281 49 53 chr1 83551996 83552259 -113643173 + MTD LTR MaLR 1 262 -157 7 1222 5738 151 160 16 chr1 83552277 83553213 -113642219 - L1_Mur3 LINE L1 -135 5745 4631 7 1222 342 0 0 0 chr1 83553213 83553251 -113642181 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1222 5738 151 160 16 chr1 83553251 83553589 -113641843 - L1_Mur3 LINE L1 -1250 4630 4288 7 1222 687 232 59 6 chr1 83553589 83553758 -113641674 + MTE2a LTR MaLR 202 379 0 8 1222 1048 296 113 14 chr1 83555589 83555952 -113639480 + MTD LTR MaLR 1 399 -20 8 1222 460 279 233 20 chr1 83556502 83556798 -113638634 + HAL1 LINE L1 1452 1810 -697 8 1222 270 229 0 0 chr1 83557004 83557074 -113638358 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 8 1222 219 175 0 0 chr1 83558333 83558390 -113637042 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 8 1222 303 291 70 25 chr1 83558484 83558668 -113636764 - Lx8 LINE L1 -183 7290 7048 8 1222 24 32 0 0 chr1 83558793 83558824 -113636608 + AT_rich Low_complexity Low_complexity 1 31 0 8 1222 188 317 127 24 chr1 83559608 83559734 -113635698 + MIRb SINE MIR 23 161 -107 8 1222 2041 121 37 6 chr1 83560158 83560483 -113634949 - Lx3_Mus LINE L1 -8 7001 6667 8 1222 3039 62 5 3 chr1 83561719 83562109 -113633323 - L1_Mus3 LINE L1 -12 6626 6236 8 1222 21 0 0 0 chr1 83562192 83562213 -113633219 + AT_rich Low_complexity Low_complexity 1 21 0 9 1222 301 318 104 44 chr1 83562765 83563015 -113632417 - L1MD3 LINE L1 0 7995 7731 9 1222 217 321 26 78 chr1 83563241 83563356 -113632076 - MER5B DNA MER1_type -37 141 33 9 1222 22 56 0 0 chr1 83563737 83563773 -113631659 + AT_rich Low_complexity Low_complexity 1 36 0 9 1222 834 355 74 25 chr1 83564081 83564488 -113630944 - MLT2B3 LTR ERVL 0 554 128 9 1222 940 308 61 74 chr1 83564493 83564872 -113630560 - MTEa LTR MaLR -1 378 5 9 1222 373 273 16 47 chr1 83564875 83565002 -113630430 - MLT2B3 LTR ERVL -423 131 9 9 1222 2642 162 13 24 chr1 83566021 83566490 -113628942 - Lx4A LINE L1 -1 7057 6594 9 1222 1282 169 32 16 chr1 83566491 83566743 -113628689 + Lx4A LINE L1 6302 6557 -501 9 1222 231 36 0 0 chr1 83566749 83566777 -113628655 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1222 242 116 23 0 chr1 83566777 83566820 -113628612 + Lx4A LINE L1 6547 6590 -468 9 1222 390 305 124 12 chr1 83566895 83567064 -113628368 - MLT1D LTR MaLR -317 188 1 9 1222 239 274 36 108 chr1 83567064 83567137 -113628295 + RMER12 LTR ERVK 783 845 -477 9 1222 306 258 109 31 chr1 83567765 83567893 -113627539 - Lx8 LINE L1 -269 7204 7067 1 1222 360 302 0 0 chr1 83567915 83568021 -113627411 - Lx8 LINE L1 -776 6697 6592 1 1222 281 68 23 0 chr1 83568837 83568881 -113626551 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1222 758 196 0 27 chr1 83568906 83569053 -113626379 - B1_Mur2 SINE Alu -2 147 5 1 1222 3304 74 0 0 chr1 83569135 83569596 -113625836 - L1_Mm LINE L1 -3145 2738 2278 1 1222 2452 44 6 6 chr1 83569586 83569909 -113625523 + L1Md_F2 LINE L1 5263 5585 -298 1 1222 7747 56 0 25 chr1 83569910 83570919 -113624513 + L1Md_F2 LINE L1 5587 6570 -12 1 1222 798 67 0 0 chr1 83570981 83571086 -113624346 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 1 1222 446 162 0 0 chr1 83571402 83571482 -113623950 - L1_Mur1 LINE L1 -1254 4632 4553 1 1222 5862 92 21 1 chr1 83571482 83572291 -113623141 + L1_Mus4 LINE L1 5811 6635 -1 1 1222 880 258 147 12 chr1 83572372 83572706 -113622726 - MTEa LTR MaLR 0 379 1 1 1222 415 220 44 35 chr1 83573277 83573390 -113622042 + MER53 DNA hAT 2 115 -78 1 1222 1376 160 0 4 chr1 83573425 83573651 -113621781 - RLTR14 LTR ERV1 -157 225 1 1 1222 4871 60 12 11 chr1 83574216 83574861 -113620571 - L1Md_F2 LINE L1 -12 6570 5925 1 1222 180 0 0 0 chr1 83575444 83575464 -113619968 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1 1222 440 35 17 0 chr1 83575465 83575523 -113619909 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 1222 548 29 14 0 chr1 83576385 83576455 -113618977 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1222 631 24 24 0 chr1 83576455 83576539 -113618893 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1222 24 53 0 0 chr1 83576691 83576729 -113618703 + AT_rich Low_complexity Low_complexity 1 38 0 1 1222 534 298 15 53 chr1 83576950 83577156 -113618276 + B3A SINE B2 1 198 0 1 1222 508 341 99 16 chr1 83578353 83578675 -113616757 + MLT1A LTR MaLR 1 349 -25 1 1222 256 265 108 108 chr1 83578809 83578957 -113616475 - B1F2 SINE Alu 0 149 2 1 1222 573 15 0 0 chr1 83580364 83580430 -113615002 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1222 1993 195 30 56 chr1 83580652 83581168 -113614264 - RLTR26 LTR ERVK 0 642 1 1 1222 230 354 0 0 chr1 83581381 83581460 -113613972 + MLT1B LTR MaLR 41 119 -271 1 1222 1409 236 13 55 chr1 83581469 83581854 -113613578 - Lx9 LINE L1 -197 7447 7079 1 1222 406 188 44 22 chr1 83581862 83581998 -113613434 + Lx9 LINE L1 7500 7638 -6 1 1222 449 298 24 105 chr1 83582067 83582277 -113613155 + MLT1B LTR MaLR 193 385 -5 1 1222 228 326 102 15 chr1 83583295 83583432 -113612000 - MIR SINE MIR -111 151 3 1 1222 825 204 14 0 chr1 83583726 83583873 -113611559 - B1_Mur4 SINE Alu -1 149 1 1 1222 918 274 5 0 chr1 83584644 83584845 -113610587 + B3 SINE B2 1 202 -14 1 1222 340 339 20 56 chr1 83585601 83585798 -113609634 - MLT2D LTR ERVL -192 222 33 1 1222 438 270 0 0 chr1 83586722 83586833 -113608599 - Lx8 LINE L1 -597 6876 6766 1 1222 1228 287 46 22 chr1 83587216 83587451 -113607981 - Lx8 LINE L1 -857 6616 6366 1 1222 2004 153 49 19 chr1 83587451 83587818 -113607614 + ORR1C1 LTR MaLR 1 378 0 1 1222 1228 287 46 22 chr1 83587818 83587995 -113607437 - Lx8 LINE L1 -1108 6365 6194 1 1222 915 292 24 15 chr1 83588089 83588419 -113607013 + Lx8 LINE L1 6644 6976 -497 1 1222 639 193 0 0 chr1 83588452 83588566 -113606866 + B1_Mus1 SINE Alu 1 114 -34 1 1222 425 317 58 37 chr1 83588599 83588789 -113606643 + Lx8 LINE L1 7137 7330 -143 1 1222 594 245 21 14 chr1 83588869 83589010 -113606422 + B1_Mur1 SINE Alu 5 146 -3 1 1222 599 0 14 0 chr1 83589551 83589622 -113605810 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1222 1093 95 0 0 chr1 83589663 83589810 -113605622 + B1_Mus1 SINE Alu 2 148 0 1 1222 207 0 0 0 chr1 83589810 83589833 -113605599 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 1 1222 571 46 0 22 chr1 83589854 83589943 -113605489 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 1 1222 797 274 83 48 chr1 83589978 83590292 -113605140 + MER67C LTR ERV1 356 680 -31 1 1222 787 283 72 21 chr1 83590813 83591186 -113604246 - RMER15 LTR ERVL 0 575 61 1 1222 1513 74 0 0 chr1 83591499 83591702 -113603730 + Lx3_Mus LINE L1 6408 6610 -399 1 1222 468 0 0 0 chr1 83591863 83591915 -113603517 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1222 2388 86 106 3 chr1 83592419 83592779 -113602653 + Lx3_Mus LINE L1 6613 7009 0 1 1222 229 278 80 87 chr1 83592885 83593023 -113602409 + MIR SINE MIR 12 148 -114 1 1222 387 347 45 35 chr1 83593127 83593327 -113602105 - MamGypLTR2b LTR Gypsy -17 905 704 1 1222 315 0 0 0 chr1 83593737 83593772 -113601660 + (CTA)n Simple_repeat Simple_repeat 1 35 0 1 1222 422 332 62 31 chr1 83594156 83594369 -113601063 + L1MEf LINE L1 1086 1418 -5060 1 1222 347 260 109 78 chr1 83594383 83594767 -113600665 + L1MEf LINE L1 1419 1814 -4664 1 1222 198 0 0 0 chr1 83594906 83594928 -113600504 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1222 309 328 5 75 chr1 83595086 83595287 -113600145 + L1MEf LINE L1 2129 2315 -4163 1 1222 914 291 89 87 chr1 83595452 83595810 -113599622 + ORR1E LTR MaLR 1 359 0 1 1222 311 397 27 55 chr1 83595868 83596124 -113599308 + MLT1E3 LTR MaLR 262 510 -114 1 1222 1106 309 51 15 chr1 83596299 83596694 -113598738 - Lx8 LINE L1 -142 7331 6923 1 1222 26 30 0 0 chr1 83597203 83597236 -113598196 + AT_rich Low_complexity Low_complexity 1 33 0 1 1222 610 310 92 69 chr1 83597948 83598295 -113597137 - ORR1E LTR MaLR -4 355 1 1 1222 1270 103 0 11 chr1 83598863 83599050 -113596382 + B2_Mm2 SINE B2 3 187 -8 1 1222 4067 57 16 0 chr1 83599619 83600130 -113595302 - L1_Mus1 LINE L1 0 6567 6049 1 1222 1410 43 5 0 chr1 83600130 83600315 -113595117 + L1_Mus3 LINE L1 5674 5859 -779 1 1222 231 329 55 0 chr1 83600323 83600396 -113595036 - ORR1D2 LTR MaLR -14 356 280 1 1222 16973 128 9 7 chr1 83600500 83604176 -113591256 + L1_Mus4 LINE L1 2946 6630 -6 1 1222 999 103 0 0 chr1 83604975 83605121 -113590311 + (TTTTC)n Simple_repeat Simple_repeat 2 147 0 1 1222 4312 155 6 8 chr1 83605123 83605844 -113589588 - Lx LINE L1 -12 6642 5924 1 1222 717 134 0 0 chr1 83606011 83606130 -113589302 + Lx2 LINE L1 6879 6997 0 1 1222 636 268 51 55 chr1 83606154 83606305 -113589127 + B3 SINE B2 1 152 -64 1 1222 528 16 0 0 chr1 83606305 83606366 -113589066 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1222 636 268 51 55 chr1 83606366 83606431 -113589001 + B3 SINE B2 153 215 -1 1 1222 258 393 17 0 chr1 83606433 83606550 -113588882 - MER45C DNA Tip100 -834 119 1 1 1222 248 270 86 43 chr1 83606569 83606662 -113588770 + MIRb SINE MIR 52 148 -120 1 1222 204 135 0 0 chr1 83606925 83606962 -113588470 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1222 923 58 8 0 chr1 83606963 83607084 -113588348 - B1_Mm SINE Alu -1 146 25 1 1222 21 0 0 0 chr1 83607248 83607269 -113588163 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 397 310 124 8 chr1 83607281 83607515 -113587917 - Lx8 LINE L1 -8 7465 7205 1 1222 295 273 67 16 chr1 83607520 83607682 -113587750 + Lx8 LINE L1 5786 5948 -1525 1 1222 997 286 70 5 chr1 83608101 83608474 -113586958 + Lx8 LINE L1 6755 7151 -322 1 1222 266 0 29 0 chr1 83608603 83608637 -113586795 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1222 1892 209 47 2 chr1 83610836 83611244 -113584188 + Lx2B LINE L1 6570 6995 -5 1 1222 36300 12 2 7 chr1 83611878 83617076 -113578356 + L1Md_A LINE L1 422 5586 -297 1 1222 8804 16 0 0 chr1 83617076 83618072 -113577360 + L1Md_A LINE L1 5587 6582 0 1 1222 477 224 10 10 chr1 83618645 83618863 -113576569 + (TG)n Simple_repeat Simple_repeat 1 218 0 1 1222 567 144 0 0 chr1 83619221 83619318 -113576114 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1222 297 0 0 0 chr1 83619323 83619356 -113576076 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1222 2908 159 25 6 chr1 83619495 83620020 -113575412 - Lx2B LINE L1 -106 6894 6360 1 1222 590 321 191 13 chr1 83620412 83620788 -113574644 + MER90a LTR ERV1 53 495 -119 1 1222 313 65 51 25 chr1 83620789 83620868 -113574564 + (TTTTTG)n Simple_repeat Simple_repeat 3 83 0 1 1222 1026 103 0 46 chr1 83620868 83621021 -113574411 - B1_Mus1 SINE Alu 0 148 3 1 1222 1512 53 0 11 chr1 83621282 83621471 -113573961 + B2_Mm1t SINE B2 2 188 -5 1 1222 23 0 0 0 chr1 83623508 83623531 -113571901 + AT_rich Low_complexity Low_complexity 1 23 0 1 1223 556 158 9 9 chr1 83623988 83624103 -113571329 + (TA)n Simple_repeat Simple_repeat 1 115 0 1 1223 477 0 0 0 chr1 83624531 83624584 -113570848 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1223 771 135 6 29 chr1 83625096 83625271 -113570161 + GA-rich Low_complexity Low_complexity 3 173 0 1 1223 661 339 30 38 chr1 83625613 83625762 -113569670 - B4A SINE B4 -2 290 140 1 1223 663 246 207 71 chr1 83625762 83625905 -113569527 - ORR1D2 LTR MaLR -2 368 190 1 1223 734 22 0 11 chr1 83625905 83625998 -113569434 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 1223 663 246 207 71 chr1 83625998 83626178 -113569254 - ORR1D2 LTR MaLR -181 189 1 1 1223 661 339 30 38 chr1 83626178 83626295 -113569137 - B4A SINE B4 -153 139 26 1 1223 1064 166 260 0 chr1 83626376 83626611 -113568821 + ORR1B1 LTR MaLR 5 300 -94 1 1223 1633 160 32 65 chr1 83626611 83626919 -113568513 + ORR1A3 LTR MaLR 1 298 -28 1 1223 338 109 0 35 chr1 83627117 83627174 -113568258 + ORR1A3 LTR MaLR 272 326 0 1 1223 355 157 157 0 chr1 83627174 83627243 -113568189 + ORR1A3 LTR MaLR 296 375 -19 1 1223 804 293 145 57 chr1 83628207 83628648 -113566784 - MER76 LTR ERVL -211 480 1 1 1223 375 296 241 14 chr1 83629323 83629617 -113565815 + MLT1A1 LTR MaLR 1 361 -47 1 1223 2294 99 48 24 chr1 83630874 83631247 -113564185 + Lx LINE L1 6268 6649 -5 1 1223 1610 240 99 0 chr1 83631301 83631676 -113563756 - MTD LTR MaLR 0 419 8 1 1223 447 263 123 7 chr1 83631809 83631947 -113563485 + MLT1D LTR MaLR 39 192 -313 1 1223 623 288 211 19 chr1 83631948 83632321 -113563111 + Lx8 LINE L1 6764 7208 -265 1 1223 257 234 0 59 chr1 83632379 83632447 -113562985 + RMER15 LTR ERVL 404 467 -108 1 1223 762 266 43 66 chr1 83633591 83633941 -113561491 + RLTR15 LTR ERVK 1 342 -17 1 1223 254 369 62 26 chr1 83634011 83634203 -113561229 - L2 LINE L2 -566 2853 2655 1 1223 1969 138 59 62 chr1 83634407 83634763 -113560669 + ORR1B2 LTR MaLR 1 355 -12 1 1223 286 303 244 33 chr1 83636440 83636805 -113558627 - L2 LINE L2 -2287 1132 691 1 1223 3554 47 65 0 chr1 83638391 83638837 -113556595 - L1Md_F2 LINE L1 -14 6568 6094 1 1223 2799 43 5 26 chr1 83638837 83639223 -113556209 + L1Md_F2 LINE L1 5703 6080 -502 1 1223 243 0 0 0 chr1 83639686 83639713 -113555719 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1223 1107 251 112 0 chr1 83639759 83640134 -113555298 - Lx9 LINE L1 -1 7643 7227 2 1223 581 315 126 18 chr1 83640967 83641285 -113554147 - MLT1A0 LTR MaLR 0 374 2 2 1223 642 282 67 60 chr1 83641569 83641852 -113553580 - Lx6 LINE L1 -43 7417 7133 2 1223 521 318 66 16 chr1 83641894 83642137 -113553295 + MER67C LTR ERV1 158 412 -299 2 1223 266 299 122 30 chr1 83643778 83643820 -113551612 + B1F2 SINE Alu 6 147 -1 2 1223 322 276 11 11 chr1 83643820 83643908 -113551524 + ID_B1 SINE B4 137 224 0 2 1223 317 328 60 60 chr1 83644221 83644403 -113551029 + MLT1D LTR MaLR 6 187 -440 2 1223 1048 277 76 26 chr1 83644427 83644768 -113550664 - MTE2b LTR MaLR -20 359 2 2 1223 2691 138 153 78 chr1 83644799 83645441 -113549991 + RMER6C LTR ERVK 1 690 0 2 1223 613 309 68 17 chr1 83645452 83645689 -113549743 + MLT1D LTR MaLR 249 497 -8 2 1223 263 421 68 19 chr1 83646691 83646897 -113548535 - LTR33A LTR ERVL -304 216 1 2 1223 228 347 119 16 chr1 83647914 83648040 -113547392 + MLT1E2 LTR MaLR 288 426 -201 2 1223 448 369 98 12 chr1 83648989 83649244 -113546188 + B4A SINE B4 16 292 0 2 1223 191 167 0 23 chr1 83650980 83651023 -113544409 + GA-rich Low_complexity Low_complexity 4 45 0 2 1223 298 333 79 0 chr1 83651417 83651543 -113543889 + MER5A DNA MER1_type 1 136 -53 2 1223 925 287 121 10 chr1 83652580 83652895 -113542537 - MTE2b LTR MaLR -8 351 39 2 1223 731 211 0 11 chr1 83653563 83653745 -113541687 + CT-rich Low_complexity Low_complexity 1 180 0 2 1223 351 0 0 0 chr1 83653938 83653977 -113541455 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1223 390 115 0 0 chr1 83653977 83654037 -113541395 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1223 347 298 73 24 chr1 83656219 83656343 -113539089 + RMER15 LTR ERVL 427 556 -19 2 1223 659 285 120 82 chr1 83656363 83656654 -113538778 + ORR1E LTR MaLR 16 317 -42 2 1223 1136 70 0 14 chr1 83656681 83656827 -113538605 - B1_Mus1 SINE Alu 0 148 5 2 1223 351 143 0 0 chr1 83656836 83656892 -113538540 + ORR1E LTR MaLR 319 374 -5 2 1223 520 209 169 8 chr1 83656894 83657024 -113538408 + B3A SINE B2 2 152 -46 2 1223 459 0 0 0 chr1 83657050 83657101 -113538331 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1223 6347 124 17 9 chr1 83657326 83658301 -113537131 + RLTR13C1 LTR ERVK 1 983 0 2 1223 340 261 34 25 chr1 83658828 83658946 -113536486 - MIR SINE MIR -1 261 143 2 1223 669 240 42 12 chr1 83660543 83660758 -113534674 - Lx4B LINE L1 -33 7025 6718 2 1223 597 260 38 38 chr1 83662764 83662948 -113532484 - MTEa LTR MaLR -11 368 185 2 1223 225 0 0 0 chr1 83663508 83663533 -113531899 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1223 249 236 181 6 chr1 83663630 83663796 -113531636 - L1MA9 LINE L1 -109 6203 6009 2 1223 690 234 0 50 chr1 83663890 83664088 -113531344 + Lx4B LINE L1 6866 7053 -5 2 1223 306 167 111 0 chr1 83664311 83664383 -113531049 - L1M2 LINE L1 -864 5279 5200 2 1223 29 60 0 0 chr1 83664950 83665000 -113530432 + AT_rich Low_complexity Low_complexity 1 50 0 2 1223 261 210 14 21 chr1 83665881 83666026 -113529406 + CT-rich Low_complexity Low_complexity 1 143 0 2 1223 391 310 116 68 chr1 83666099 83666172 -113529260 - L1MB7 LINE L1 -9 6169 6097 2 1223 1072 77 0 40 chr1 83666172 83666321 -113529111 + B1_Mus1 SINE Alu 1 143 -5 2 1223 402 307 149 36 chr1 83666321 83666849 -113528583 - L1MB7 LINE L1 -82 6096 5539 2 1223 6246 71 21 0 chr1 83666956 83667818 -113527614 + L1_Mus1 LINE L1 5688 6567 0 2 1223 23 0 0 0 chr1 83667818 83667841 -113527591 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 504 0 0 0 chr1 83668267 83668323 -113527109 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 1223 378 121 0 0 chr1 83668323 83668388 -113527044 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1223 743 324 9 18 chr1 83668837 83669063 -113526369 + B4A SINE B4 10 233 -59 2 1223 421 206 0 14 chr1 83669056 83669130 -113526302 + B3A SINE B2 6 78 -120 2 1223 252 0 0 0 chr1 83669246 83669274 -113526158 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1223 423 0 0 0 chr1 83669274 83669320 -113526112 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1223 36399 14 1 7 chr1 83669725 83674925 -113520507 + L1Md_A LINE L1 422 5586 -297 2 1223 8720 19 0 1 chr1 83674925 83675922 -113519510 + L1Md_A LINE L1 5587 6582 0 2 1223 39 22 0 0 chr1 83676173 83676219 -113519213 + AT_rich Low_complexity Low_complexity 1 46 0 2 1223 186 43 0 0 chr1 83676264 83676287 -113519145 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1223 412 284 29 43 chr1 83676767 83676907 -113518525 - MER5A1 DNA MER1_type 0 166 29 2 1223 24 53 0 0 chr1 83677438 83677476 -113517956 + AT_rich Low_complexity Low_complexity 1 38 0 2 1223 2090 82 0 32 chr1 83678162 83678476 -113516956 - L1Md_F2 LINE L1 0 6582 6279 2 1223 372 294 19 29 chr1 83678559 83678664 -113516768 + B4A SINE B4 189 292 0 2 1223 307 314 78 62 chr1 83679039 83679297 -113516135 - Lx8 LINE L1 -6 7467 7206 2 1223 232 371 83 7 chr1 83679882 83680026 -113515406 + MER21B LTR ERV1 406 560 -303 2 1223 380 314 8 33 chr1 83680016 83680138 -113515294 + B4A SINE B4 28 146 -146 2 1223 221 230 25 202 chr1 83680045 83680203 -113515229 + B3 SINE B2 57 186 -30 2 1223 360 353 102 0 chr1 83680213 83680400 -113515032 + MER21B LTR ERV1 606 811 -52 2 1223 454 277 164 33 chr1 83680716 83680968 -113514464 + MLT2B4 LTR ERVL 14 276 -138 2 1223 200 91 57 57 chr1 83681106 83681176 -113514256 + (TCTG)n Simple_repeat Simple_repeat 3 72 0 2 1223 253 194 35 53 chr1 83681196 83681267 -113514165 + ORR1D1 LTR MaLR 1 69 -290 2 1223 665 198 76 127 chr1 83682206 83682403 -113513029 + B3A SINE B2 2 188 -7 2 1223 251 318 160 14 chr1 83682523 83682886 -113512546 + L1MD2 LINE L1 5939 6354 -5 2 1223 455 341 22 58 chr1 83682934 83683156 -113512276 - B4A SINE B4 -1 291 3 2 1223 250 276 10 30 chr1 83683297 83683398 -113512034 + L1M5 LINE L1 5689 5787 -392 2 1223 1276 218 77 63 chr1 83683399 83683794 -113511638 - MT2A LTR ERVL -113 488 2 2 1223 2021 171 76 0 chr1 83684630 83684986 -113510446 - ORR1B1 LTR MaLR -8 386 4 2 1223 801 129 8 0 chr1 83685706 83685830 -113509602 + MTC LTR MaLR 199 323 -98 2 1223 1669 197 9 58 chr1 83685842 83686171 -113509261 - ORR1A4 LTR MaLR -12 317 5 2 1223 460 182 38 0 chr1 83686171 83686269 -113509163 + MTC LTR MaLR 317 421 0 2 1223 5377 193 74 26 chr1 83686252 83687425 -113508007 + MTC-int LTR MaLR 2 1231 -27 2 1223 1125 15 0 0 chr1 83687428 83687562 -113507870 - L1_Mm LINE L1 -725 5158 5025 2 1223 215 260 20 0 chr1 83687562 83687612 -113507820 - B3A SINE B2 -144 54 4 2 1223 247 242 10 10 chr1 83687655 83687755 -113507677 + GA-rich Low_complexity Low_complexity 1 100 0 2 1223 1289 219 16 48 chr1 83688386 83688698 -113506734 - Lx6 LINE L1 -5 7455 7154 2 1223 191 167 24 0 chr1 83690441 83690483 -113504949 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1223 297 0 0 0 chr1 83690612 83690645 -113504787 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1223 548 338 101 16 chr1 83690668 83690915 -113504517 - B4A SINE B4 -22 270 3 2 1223 7486 76 19 1 chr1 83691596 83692797 -113502635 - L1_Mus4 LINE L1 -3 6633 5409 2 1223 1728 133 8 97 chr1 83692776 83693069 -113502363 + L1_Mur2 LINE L1 5094 5352 -525 2 1223 2115 104 9 31 chr1 83693069 83693131 -113502301 + L1_Mus3 LINE L1 6319 6376 -262 2 1223 186 43 0 0 chr1 83693131 83693154 -113502278 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1223 2115 104 9 31 chr1 83693154 83693411 -113502021 + L1_Mus3 LINE L1 6377 6631 -7 2 1223 180 0 0 0 chr1 83693411 83693431 -113502001 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1223 1728 133 8 97 chr1 83693436 83693532 -113501900 + L1_Mur2 LINE L1 5353 5448 -429 2 1223 259 351 124 19 chr1 83694367 83694576 -113500856 - MIR SINE MIR -30 232 2 2 1223 255 273 46 56 chr1 83695262 83695451 -113499981 + Lx7 LINE L1 5668 5845 -2 2 1223 580 256 24 8 chr1 83696894 83697020 -113498412 + RSINE1 SINE B4 2 129 -36 2 1223 960 70 0 0 chr1 83697028 83697157 -113498275 + (TCTCCC)n Simple_repeat Simple_repeat 3 131 0 2 1223 2359 152 37 20 chr1 83697392 83697801 -113497631 + MTC LTR MaLR 6 421 0 2 1223 521 237 79 0 chr1 83698090 83698204 -113497228 + RSINE1 SINE B4 8 130 -35 2 1223 462 18 0 0 chr1 83698226 83698281 -113497151 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1223 535 27 0 27 chr1 83698281 83698355 -113497077 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1223 262 294 0 66 chr1 83698979 83699070 -113496362 + MTEb LTR MaLR 295 379 0 2 1223 411 21 0 0 chr1 83699216 83699264 -113496168 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1223 570 29 0 0 chr1 83699264 83699332 -113496100 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1223 540 277 117 0 chr1 83699336 83699473 -113495959 - B3A SINE B2 -44 154 2 2 1223 182 426 37 0 chr1 83699489 83699597 -113495835 - MIR SINE MIR -120 142 31 2 1223 1106 58 0 0 chr1 83700663 83700800 -113494632 + B1_Mus1 SINE Alu 3 139 -9 2 1223 432 0 0 0 chr1 83700800 83700848 -113494584 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1223 26 0 0 0 chr1 83701046 83701072 -113494360 + AT_rich Low_complexity Low_complexity 1 26 0 2 1223 405 0 0 0 chr1 83701257 83701302 -113494130 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1223 1829 230 24 11 chr1 83703346 83703719 -113491713 + MTD LTR MaLR 5 382 -37 2 1223 279 354 0 10 chr1 83703973 83704070 -113491362 + G-rich Low_complexity Low_complexity 5 100 0 2 1223 875 218 46 184 chr1 83704341 83704775 -113490657 + ORR1D1 LTR MaLR 1 374 0 2 1223 956 309 42 0 chr1 83704822 83705081 -113490351 - B4A SINE B4 -21 271 2 2 1223 430 230 14 0 chr1 83705341 83705489 -113489943 + (TG)n Simple_repeat Simple_repeat 1 150 0 2 1223 637 288 6 0 chr1 83705489 83705652 -113489780 - RSINE1 SINE B4 0 165 2 2 1223 3360 238 101 25 chr1 83706443 83707720 -113487712 + RMER1A Other Other 16 1030 0 3 1223 713 279 129 27 chr1 83707830 83707882 -113487550 - B4A SINE B4 -20 272 214 3 1223 325 55 18 35 chr1 83707882 83707939 -113487493 + (CTA)n Simple_repeat Simple_repeat 1 56 0 3 1223 713 279 129 27 chr1 83707939 83708111 -113487321 - B4A SINE B4 -79 213 25 3 1223 959 131 6 0 chr1 83708675 83708835 -113486597 + (TCTCC)n Simple_repeat Simple_repeat 1 161 0 3 1223 528 16 0 0 chr1 83708836 83708897 -113486535 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 3 1223 367 276 247 9 chr1 83708928 83709165 -113486267 + MER44A DNA MER2_type 7 300 -39 3 1223 477 267 68 0 chr1 83709167 83709343 -113486089 - Tigger7 DNA MER2_type -83 2408 2229 3 1223 592 312 40 40 chr1 83709352 83709552 -113485880 - B3 SINE B2 -6 210 11 3 1223 446 309 57 135 chr1 83709658 83709991 -113485441 - Tigger7 DNA MER2_type -2184 307 1 3 1223 261 0 0 0 chr1 83710408 83710437 -113484995 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1223 454 272 159 8 chr1 83710886 83711012 -113484420 - RSINE1 SINE B4 -15 150 6 3 1223 985 257 66 101 chr1 83711298 83711753 -113483679 - RLTR12B LTR ERVK -43 485 47 3 1223 545 214 8 38 chr1 83712201 83712332 -113483100 + Lx7 LINE L1 7118 7244 -452 3 1223 238 250 0 62 chr1 83712343 83712407 -113483025 - RMER21B LTR ERV1 -112 835 776 3 1223 301 247 423 13 chr1 83712472 83712628 -113482804 - RMER21B LTR ERV1 -275 567 348 3 1223 259 141 15 30 chr1 83712865 83712931 -113482501 + Lx9 LINE L1 7564 7628 -16 3 1223 756 218 20 139 chr1 83713185 83713436 -113481996 + ID_B1 SINE B4 4 224 0 3 1223 195 204 0 0 chr1 83713605 83713649 -113481783 + GA-rich Low_complexity Low_complexity 3 46 0 3 1223 592 77 22 0 chr1 83713655 83713746 -113481686 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 1223 306 311 102 36 chr1 83714143 83714280 -113481152 - MER5A1 DNA MER1_type 0 166 21 3 1223 407 320 55 30 chr1 83714670 83714870 -113480562 - L1M4 LINE L1 -2580 3566 3362 3 1223 328 291 36 18 chr1 83715049 83715161 -113480271 - Tigger5 DNA MER2_type -1555 851 738 3 1223 387 282 24 62 chr1 83715398 83715606 -113479826 - Lx7 LINE L1 -1436 6260 6061 3 1223 4461 82 3 0 chr1 83715619 83716201 -113479231 + MT2B2 LTR ERVL 1 584 0 3 1223 523 323 71 15 chr1 83716223 83716421 -113479011 + Lx7 LINE L1 6975 7183 -513 3 1223 756 129 0 0 chr1 83716433 83716580 -113478852 + (GA)n Simple_repeat Simple_repeat 2 148 0 3 1223 1113 186 64 15 chr1 83718518 83718785 -113476647 + Lx9 LINE L1 7227 7506 -138 3 1223 493 301 76 25 chr1 83719079 83719236 -113476196 - RSINE1 SINE B4 0 165 1 3 1223 255 103 0 0 chr1 83720521 83720560 -113474872 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1223 21 36 0 0 chr1 83722631 83722659 -113472773 + AT_rich Low_complexity Low_complexity 1 28 0 3 1223 394 257 87 17 chr1 83722986 83723101 -113472331 - PB1 SINE Alu -4 123 1 3 1223 22 0 0 0 chr1 83723277 83723299 -113472133 + GC_rich Low_complexity Low_complexity 1 22 0 3 1223 441 0 0 0 chr1 83723731 83723780 -113471652 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1223 740 239 30 38 chr1 83724541 83724776 -113470656 + Lx8 LINE L1 7103 7335 -138 3 1223 378 0 0 0 chr1 83724855 83724897 -113470535 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1223 185 381 86 16 chr1 83725237 83725365 -113470067 - MIRb SINE MIR -62 206 70 3 1223 218 320 38 48 chr1 83725924 83726029 -113469403 - MIR3 SINE MIR -7 201 98 3 1223 450 154 0 0 chr1 83726187 83726265 -113469167 + GA-rich Low_complexity Low_complexity 1 78 0 3 1223 2315 61 7 0 chr1 83726744 83727041 -113468391 + MTA_Mm LTR MaLR 1 299 -97 3 1223 5296 53 46 3 chr1 83727032 83727066 -113468366 + MTA_Mm-int LTR MaLR 352 385 -713 3 1223 1641 47 0 5 chr1 83727066 83727281 -113468151 + L1Md_F3 LINE L1 6371 6584 0 3 1223 5296 53 46 3 chr1 83727281 83727962 -113467470 + MTA_Mm-int LTR MaLR 386 1098 0 3 1223 3236 51 5 2 chr1 83727962 83728357 -113467075 + MTA_Mm LTR MaLR 1 396 0 3 1223 278 0 54 0 chr1 83728598 83728635 -113466797 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1223 192 195 48 24 chr1 83728806 83728848 -113466584 - L2a LINE L2 -21 3405 3363 3 1223 6836 63 4 2 chr1 83728913 83729822 -113465610 - L1_Mus2 LINE L1 0 6566 5656 3 1223 256 29 29 0 chr1 83729822 83729856 -113465576 + L1_Mus2 LINE L1 5626 5660 -906 3 1223 1216 290 112 68 chr1 83729848 83730682 -113464750 + L1MCa LINE L1 596 1412 -5096 3 1223 450 0 0 0 chr1 83730682 83730732 -113464700 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1223 1216 290 112 68 chr1 83730732 83731512 -113463920 + L1MCa LINE L1 1413 2281 -4227 3 1223 181 146 42 0 chr1 83732096 83732144 -113463288 + GA-rich Low_complexity Low_complexity 4 53 0 3 1223 1036 211 252 44 chr1 83732182 83732528 -113462904 - MTD LTR MaLR -14 405 1 3 1223 435 19 0 0 chr1 83733356 83733408 -113462024 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1223 198 310 68 17 chr1 83733485 83733603 -113461829 - MIR SINE MIR -29 233 110 3 1223 265 264 130 16 chr1 83733871 83733994 -113461438 + B1F SINE Alu 5 141 -8 3 1223 345 196 0 0 chr1 83734001 83734057 -113461375 + ID4_ SINE ID 15 70 -13 3 1223 477 0 0 0 chr1 83734061 83734114 -113461318 + (CAAG)n Simple_repeat Simple_repeat 4 56 0 3 1223 852 55 0 0 chr1 83734129 83734239 -113461193 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 3 1223 194 220 17 0 chr1 83734302 83734361 -113461071 + GA-rich Low_complexity Low_complexity 3 62 0 3 1223 773 21 0 10 chr1 83734687 83734729 -113460703 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1223 1316 62 0 11 chr1 83734729 83734909 -113460523 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1223 773 21 0 10 chr1 83734909 83734962 -113460470 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1223 235 310 27 40 chr1 83735288 83735362 -113460070 + ID4 SINE ID 1 73 -10 3 1223 696 111 0 0 chr1 83735367 83735475 -113459957 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 3 1223 803 273 110 21 chr1 83735699 83735980 -113459452 - MTE2a LTR MaLR -16 363 58 3 1223 893 178 0 11 chr1 83736146 83736328 -113459104 + CT-rich Low_complexity Low_complexity 1 180 0 3 1223 929 136 7 0 chr1 83736370 83736510 -113458922 - B1_Mus1 SINE Alu -7 141 1 3 1223 306 125 0 0 chr1 83737405 83737453 -113457979 + (GAA)n Simple_repeat Simple_repeat 1 48 0 3 1223 1185 278 71 12 chr1 83737534 83737872 -113457560 + MTEa LTR MaLR 22 379 0 3 1223 279 0 0 0 chr1 83737922 83737953 -113457479 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 1223 2063 112 13 0 chr1 83737980 83738292 -113457140 + L1_Mus3 LINE L1 6321 6636 -2 3 1223 1008 101 14 0 chr1 83739523 83739661 -113455771 + B1_Mm SINE Alu 1 140 -7 3 1223 243 79 0 0 chr1 83739663 83739701 -113455731 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1223 180 0 0 0 chr1 83739712 83739732 -113455700 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 3 1223 198 0 0 0 chr1 83739729 83739751 -113455681 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1223 344 374 83 77 chr1 83739864 83740331 -113455101 + MLT2B3 LTR ERVL 2 471 -83 3 1223 673 352 65 48 chr1 83740510 83740925 -113454507 - LTR41 LTR ERVL -333 435 14 3 1223 382 138 29 0 chr1 83740928 83741009 -113454423 - MTEb LTR MaLR 0 379 298 3 1223 446 211 16 0 chr1 83741198 83741321 -113454111 + CT-rich Low_complexity Low_complexity 4 128 0 3 1223 636 76 168 131 chr1 83741321 83741364 -113454068 - B1_Mus2 SINE Alu -5 142 116 3 1223 504 0 0 0 chr1 83741364 83741420 -113454012 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1223 636 76 168 131 chr1 83741420 83741513 -113453919 - B1_Mus2 SINE Alu -32 115 1 3 1223 320 207 182 11 chr1 83743764 83743852 -113451580 - PB1D10 SINE Alu -13 104 2 3 1223 189 354 123 35 chr1 83744437 83744607 -113450825 + L2b LINE L2 3168 3352 -23 3 1223 506 298 110 6 chr1 83746579 83746761 -113448671 + B4A SINE B4 3 203 -89 3 1223 1267 165 10 0 chr1 83747957 83748163 -113447269 - URR1B DNA MER1_type -15 210 3 3 1223 267 341 45 23 chr1 83748961 83749093 -113446339 - ORR1E LTR MaLR -223 136 2 3 1223 1246 287 13 21 chr1 83749603 83749977 -113445455 + MTEb LTR MaLR 1 371 -8 3 1223 263 215 0 25 chr1 83750697 83750915 -113444517 + (TATG)n Simple_repeat Simple_repeat 1 212 0 3 1223 219 274 0 16 chr1 83750922 83750985 -113444447 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 3 1223 450 36 0 0 chr1 83750985 83751041 -113444391 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1223 354 329 121 72 chr1 83751244 83751939 -113443493 - L1M5 LINE L1 -2863 3283 2527 3 1223 234 250 71 12 chr1 83751992 83752077 -113443355 - L1MEf LINE L1 -3678 2468 2379 3 1223 213 220 20 0 chr1 83752125 83752175 -113443257 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1223 293 277 0 65 chr1 83752614 83752722 -113442710 - Lx9 LINE L1 -1904 5740 5640 3 1223 300 335 34 43 chr1 83752914 83753123 -113442309 - L1MEf LINE L1 -4353 1889 1683 3 1223 331 333 27 32 chr1 83753138 83753324 -113442108 - L1MEf LINE L1 -4564 1678 1494 3 1223 345 277 96 117 chr1 83753593 83753842 -113441590 - ORR1E LTR MaLR -111 248 5 3 1223 375 305 34 22 chr1 83753850 83754028 -113441404 - L1MEf LINE L1 -5187 1055 876 3 1223 1014 242 62 29 chr1 83754057 83754299 -113441133 + B4 SINE B4 43 292 0 3 1223 242 223 52 21 chr1 83754314 83754410 -113441022 - L1MEf LINE L1 -5265 871 773 3 1223 207 0 0 0 chr1 83754518 83754541 -113440891 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 1223 315 369 23 15 chr1 83754758 83754890 -113440542 - L1MEf LINE L1 -5738 398 266 3 1224 863 197 17 11 chr1 83755172 83755352 -113440080 + Lx9 LINE L1 7250 7430 -214 3 1224 423 0 0 0 chr1 83755434 83755481 -113439951 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1224 267 273 93 28 chr1 83756276 83756491 -113438941 + L1M5 LINE L1 5132 5360 -786 3 1224 296 349 106 45 chr1 83756725 83756923 -113438509 + B4A SINE B4 2 211 -81 3 1224 415 290 36 7 chr1 83757053 83757192 -113438240 - RMER15-int LTR ERVL -4069 930 788 3 1224 360 289 112 10 chr1 83757904 83758110 -113437322 - L1MA6 LINE L1 -15 6285 6059 3 1224 191 208 62 0 chr1 83758747 83758795 -113436637 - L2c LINE L2 -5 3382 3332 3 1224 437 333 23 0 chr1 83758838 83758970 -113436462 + RSINE1 SINE B4 3 137 -28 3 1224 23 54 0 0 chr1 83758990 83759027 -113436405 + AT_rich Low_complexity Low_complexity 1 37 0 3 1224 829 67 0 8 chr1 83759332 83759536 -113435896 - L1_Mus1 LINE L1 0 6567 6448 4 1224 5895 54 0 1 chr1 83759536 83760292 -113435140 + L1_Mus1 LINE L1 5679 6433 -134 4 1224 537 30 0 0 chr1 83761689 83761756 -113433676 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1224 1485 34 0 0 chr1 83762947 83763126 -113432306 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 4 1224 432 132 0 42 chr1 83763126 83763221 -113432211 + CT-rich Low_complexity Low_complexity 4 94 0 4 1224 34 0 0 0 chr1 83764435 83764469 -113430963 + AT_rich Low_complexity Low_complexity 1 34 0 4 1224 2614 56 117 6 chr1 83764533 83764893 -113430539 + MTB LTR MaLR 1 400 0 4 1224 5528 129 10 78 chr1 83764893 83765892 -113429540 + MTB-int LTR MaLR 1 931 -167 4 1224 198 91 0 0 chr1 83765893 83765926 -113429506 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1224 225 277 118 53 chr1 83766611 83766798 -113428634 + L1M5 LINE L1 5157 5355 -791 4 1224 644 277 59 5 chr1 83766850 83766887 -113428545 - B3 SINE B2 0 216 169 4 1224 447 19 0 0 chr1 83766887 83766939 -113428493 + (TATG)n Simple_repeat Simple_repeat 4 55 0 4 1224 644 277 59 5 chr1 83766939 83767104 -113428328 - B3 SINE B2 -48 168 4 4 1224 555 78 0 0 chr1 83769005 83769082 -113426350 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 4 1224 534 280 109 11 chr1 83769095 83769279 -113426153 - ID_B1 SINE B4 -20 204 3 4 1224 335 202 11 0 chr1 83770166 83770260 -113425172 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1224 343 315 36 9 chr1 83770286 83770398 -113425034 - Tigger7 DNA MER2_type -6 2485 2371 4 1224 357 275 0 52 chr1 83770464 83770545 -113424887 - Tigger7 DNA MER2_type -2373 118 38 4 1224 477 34 0 0 chr1 83770545 83770604 -113424828 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1224 357 275 0 52 chr1 83770604 83770637 -113424795 - Tigger7 DNA MER2_type -2454 37 10 4 1224 299 323 89 12 chr1 83770957 83771214 -113424218 - L1M5 LINE L1 -2267 3879 3603 4 1224 2597 165 7 19 chr1 83771639 83771656 -113423776 - MTC LTR MaLR 0 421 408 4 1224 2371 96 9 3 chr1 83771656 83771981 -113423451 - ORR1A2 LTR MaLR 0 327 1 4 1224 2597 165 7 19 chr1 83771981 83772389 -113423043 - MTC LTR MaLR -14 407 1 4 1224 243 326 110 65 chr1 83773836 83774036 -113421396 + B3 SINE B2 2 210 -6 4 1224 21 89 0 0 chr1 83774739 83774795 -113420637 + AT_rich Low_complexity Low_complexity 1 56 0 4 1224 806 244 29 115 chr1 83774876 83775193 -113420239 - ORR1E LTR MaLR -4 375 55 4 1224 233 149 0 21 chr1 83775679 83775727 -113419705 - PB1D9 SINE Alu -1 119 73 4 1224 226 312 12 48 chr1 83776599 83776683 -113418749 + MER45R DNA Tip100 55 135 -1446 4 1224 408 316 34 0 chr1 83776692 83776809 -113418623 + B3A SINE B2 1 121 -77 4 1224 30 27 0 0 chr1 83777078 83777115 -113418317 + AT_rich Low_complexity Low_complexity 1 37 0 4 1224 24 77 0 0 chr1 83778966 83779018 -113416414 + AT_rich Low_complexity Low_complexity 1 52 0 4 1224 22 0 0 0 chr1 83779198 83779220 -113416212 + AT_rich Low_complexity Low_complexity 1 22 0 4 1224 1940 153 35 0 chr1 83780089 83780402 -113415030 + ORR1A3 LTR MaLR 2 325 -1 4 1224 976 137 17 0 chr1 83780418 83780593 -113414839 + CT-rich Low_complexity Low_complexity 3 180 0 4 1224 2103 213 106 71 chr1 83781089 83781794 -113413638 - RMER19B LTR ERVK 0 902 1 4 1224 408 245 157 13 chr1 83781998 83782234 -113413198 - L1MC3 LINE L1 -20 7765 7496 4 1224 248 122 0 39 chr1 83782987 83783038 -113412394 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 1224 246 328 16 0 chr1 83784071 83784132 -113411300 - ID SINE ID -159 65 4 4 1224 405 115 0 0 chr1 83785255 83785333 -113410099 + (A)n Simple_repeat Simple_repeat 1 78 0 4 1224 27 29 0 0 chr1 83785891 83785925 -113409507 + AT_rich Low_complexity Low_complexity 1 34 0 4 1224 438 111 0 12 chr1 83785925 83786007 -113409425 - Lx4A LINE L1 -2 7056 6976 4 1224 669 193 0 0 chr1 83786208 83786353 -113409079 + (TA)n Simple_repeat Simple_repeat 1 145 0 4 1224 1103 215 38 13 chr1 83786567 83786894 -113408538 - Lx9 LINE L1 -1677 5967 5600 4 1224 1325 274 38 115 chr1 83786904 83787563 -113407869 + Lx9 LINE L1 6586 7193 -451 4 1224 1122 88 0 20 chr1 83787593 83787744 -113407688 + B1_Mus1 SINE Alu 1 148 0 4 1224 789 56 0 0 chr1 83787746 83787853 -113407579 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 1224 650 290 18 181 chr1 83789867 83790309 -113405123 - ORR1D2 LTR MaLR 0 370 1 4 1224 239 258 0 0 chr1 83791018 83791080 -113404352 + T-rich Low_complexity Low_complexity 1 62 0 4 1224 351 212 0 0 chr1 83791841 83791926 -113403506 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1224 628 304 130 12 chr1 83791940 83792193 -113403239 - B4 SINE B4 -6 286 4 4 1224 3516 28 136 0 chr1 83792286 83792720 -113402712 + MT2_Mm LTR ERVL 1 493 0 4 1224 596 150 9 0 chr1 83792746 83792859 -113402573 + (TCTA)n Simple_repeat Simple_repeat 3 116 0 4 1224 278 213 0 62 chr1 83792860 83792940 -113402492 + CT-rich Low_complexity Low_complexity 3 77 0 4 1224 386 293 55 35 chr1 83792944 83793089 -113402343 - B1F SINE Alu -1 148 1 4 1224 893 294 23 58 chr1 83794941 83795201 -113400231 - B4A SINE B4 -10 282 32 4 1224 315 371 102 48 chr1 83795820 83796174 -113399258 + LTR16B LTR ERVL 20 392 -71 4 1224 868 341 122 36 chr1 83796175 83796644 -113398788 + MER67B LTR ERV1 1 509 -152 4 1224 687 227 16 0 chr1 83797729 83797857 -113397575 + RSINE1 SINE B4 1 130 -35 4 1224 554 295 21 28 chr1 83799547 83799690 -113395742 + RSINE1 SINE B4 3 144 -21 4 1224 4394 171 82 39 chr1 83799702 83800654 -113394778 + RLTR22_Mur LTR ERVK 1 993 -855 4 1224 811 216 41 89 chr1 83800818 83801088 -113394344 + RLTR22_Mur LTR ERVK 1590 1846 -2 4 1224 29 60 0 0 chr1 83801222 83801272 -113394160 + AT_rich Low_complexity Low_complexity 1 50 0 4 1224 841 308 61 14 chr1 83802048 83802344 -113393088 - MLT1E1A LTR MaLR -8 672 363 4 1224 345 326 0 0 chr1 83802651 83802740 -113392692 - Lx8 LINE L1 -135 7338 7250 4 1224 229 271 14 0 chr1 83802826 83802896 -113392536 - ORR1D1 LTR MaLR -298 76 6 4 1224 431 362 6 6 chr1 83803806 83803967 -113391465 - RSINE1 SINE B4 -4 161 1 4 1224 4991 144 32 1 chr1 83805548 83806363 -113389069 - Lx4A LINE L1 0 7058 6219 4 1224 489 198 0 0 chr1 83806374 83806465 -113388967 + Lx4A LINE L1 6139 6229 -829 4 1224 323 96 0 19 chr1 83806941 83806994 -113388438 + (ATG)n Simple_repeat Simple_repeat 1 52 0 4 1224 3714 50 2 6 chr1 83807396 83807862 -113387570 - L1Md_F2 LINE L1 -5 6577 6114 4 1224 612 246 46 66 chr1 83807872 83808068 -113387364 - B3 SINE B2 -24 192 1 4 1224 1114 194 147 77 chr1 83809045 83809195 -113386237 - ORR1C2 LTR MaLR -18 366 198 4 1224 513 0 0 0 chr1 83809195 83809252 -113386180 + (GGGA)n Simple_repeat Simple_repeat 3 59 0 4 1224 1114 194 147 77 chr1 83809252 83809441 -113385991 - ORR1C2 LTR MaLR -187 197 4 4 1224 608 256 99 30 chr1 83810567 83810768 -113384664 - RMER15 LTR ERVL -15 560 346 4 1224 486 0 0 0 chr1 83811110 83811164 -113384268 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1224 3767 57 6 0 chr1 83811995 83812465 -113382967 - L1_Mus1 LINE L1 0 6567 6095 4 1224 1046 233 113 66 chr1 83812754 83813148 -113382284 + MTD LTR MaLR 1 404 -15 4 1224 208 178 22 0 chr1 83813369 83813414 -113382018 + CT-rich Low_complexity Low_complexity 3 48 0 4 1224 244 359 0 0 chr1 83813471 83813549 -113381883 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 1224 877 59 0 0 chr1 83814471 83814590 -113380842 - L1_Mus2 LINE L1 0 6566 6448 4 1224 3207 31 5 5 chr1 83814640 83815027 -113380405 - L1Md_F3 LINE L1 -2 6582 6196 4 1224 248 356 58 17 chr1 83815142 83815262 -113380170 - RMER12 LTR ERVK -472 850 726 4 1224 364 364 49 49 chr1 83815296 83815458 -113379974 - RSINE1 SINE B4 0 165 4 4 1224 33814 35 0 0 chr1 83816187 83821402 -113374030 + L1Md_T LINE L1 278 5589 -297 4 1224 8920 10 0 3 chr1 83821402 83822401 -113373031 + L1Md_T LINE L1 5590 6585 0 4 1224 1120 297 62 55 chr1 83822511 83822842 -113372590 + L1MB3 LINE L1 5427 5766 -417 4 1224 351 44 0 0 chr1 83822842 83822887 -113372545 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1224 1120 297 62 55 chr1 83822887 83823299 -113372133 + L1MB3 LINE L1 5767 6174 -9 4 1224 2114 140 3 9 chr1 83823537 83823868 -113371564 - ORR1A4 LTR MaLR 0 329 1 4 1224 259 221 141 78 chr1 83823870 83824012 -113371420 + MLT1A1 LTR MaLR 4 154 -254 4 1224 246 62 0 0 chr1 83824464 83824496 -113370936 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1224 331 326 62 18 chr1 83826082 83826267 -113369165 - MIRb SINE MIR -57 205 11 4 1224 310 305 45 38 chr1 83826299 83826432 -113369000 + MER94 DNA AcHobo 1 134 0 4 1224 374 252 120 16 chr1 83827330 83827455 -113367977 + MER5B DNA MER1_type 9 146 -32 4 1224 693 0 0 0 chr1 83827455 83827532 -113367900 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 4 1224 243 0 0 0 chr1 83830451 83830478 -113364954 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1224 250 299 137 71 chr1 83831762 83832017 -113363415 + B4 SINE B4 2 273 -19 4 1224 330 254 151 35 chr1 83833436 83833668 -113361764 - L1M2 LINE L1 -1101 5042 4784 4 1224 2318 99 36 0 chr1 83834570 83834902 -113360530 + Lx3_Mus LINE L1 6658 7001 -8 4 1224 366 23 0 0 chr1 83834907 83834950 -113360482 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1224 336 312 16 65 chr1 83835721 83835906 -113359526 - HAL1b LINE L1 -245 1764 1589 4 1224 921 110 18 0 chr1 83835999 83836162 -113359270 + (TAGA)n Simple_repeat Simple_repeat 3 168 0 4 1224 478 264 59 128 chr1 83836340 83836544 -113358888 + B3A SINE B2 1 190 -8 4 1224 3529 59 4 15 chr1 83837822 83838284 -113357148 - L1_Mus2 LINE L1 0 6566 6110 4 1224 22 0 0 0 chr1 83838589 83838611 -113356821 + AT_rich Low_complexity Low_complexity 1 22 0 4 1224 410 0 20 0 chr1 83839345 83839395 -113356037 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1224 22 56 0 0 chr1 83840170 83840206 -113355226 + AT_rich Low_complexity Low_complexity 1 36 0 4 1224 515 237 105 0 chr1 83840236 83840350 -113355082 - RSINE1 SINE B4 -36 129 4 4 1224 4122 63 40 13 chr1 83840943 83841488 -113353944 - LTRIS2 LTR ERV1 0 564 5 4 1224 944 128 0 6 chr1 83841909 83842066 -113353366 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 5 1224 234 0 0 0 chr1 83842079 83842105 -113353327 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 5 1224 234 91 0 0 chr1 83842410 83842443 -113352989 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1224 760 60 256 0 chr1 83842443 83842560 -113352872 - B1_Mm SINE Alu 0 147 1 5 1224 385 345 93 15 chr1 83842604 83842872 -113352560 - L1MC3 LINE L1 -364 7421 7133 5 1224 243 340 117 15 chr1 83843306 83843455 -113351977 + MIRb SINE MIR 65 222 -46 5 1224 629 289 19 14 chr1 83843508 83843722 -113351710 - B3A SINE B2 0 216 2 5 1224 436 343 21 42 chr1 83843775 83843918 -113351514 + B1F SINE Alu 1 140 -9 5 1224 22 35 0 0 chr1 83844133 83844162 -113351270 + AT_rich Low_complexity Low_complexity 1 29 0 5 1224 657 266 60 10 chr1 83844214 83844415 -113351017 - ID_B1 SINE B4 -9 215 5 5 1224 439 359 19 0 chr1 83845038 83845197 -113350235 - MER45A DNA Tip100 -5 173 12 5 1224 261 0 0 0 chr1 83845785 83845814 -113349618 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 1224 4081 50 0 2 chr1 83846529 83847033 -113348399 - L1Md_F3 LINE L1 -14 6570 6068 5 1224 469 271 129 33 chr1 83847830 83848133 -113347299 + ORR1E LTR MaLR 6 357 -2 5 1224 780 303 77 10 chr1 83848726 83849050 -113346382 + MTEa LTR MaLR 3 371 -8 5 1224 244 214 87 87 chr1 83849123 83849215 -113346217 - MLT1A LTR MaLR -38 352 261 5 1224 381 250 0 65 chr1 83849302 83849409 -113346023 - MLT1A LTR MaLR -272 102 3 5 1224 1189 201 5 0 chr1 83849977 83850201 -113345231 - URR1B DNA MER1_type 0 225 1 5 1224 180 317 0 0 chr1 83850532 83850573 -113344859 - L2b LINE L2 -22 3353 3313 5 1224 732 250 32 68 chr1 83851105 83851354 -113344078 - MER31B LTR ERV1 0 466 227 5 1224 1978 203 101 40 chr1 83851481 83851560 -113343872 - RLTR20B3 LTR ERVK 0 577 473 5 1224 405 0 0 0 chr1 83851560 83851605 -113343827 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1224 1978 203 101 40 chr1 83851605 83852049 -113343383 - RLTR20B3 LTR ERVK -105 472 23 5 1224 3064 138 17 96 chr1 83852380 83853015 -113342417 + RMER4B LTR ERVK 1 585 0 5 1224 1222 7 0 0 chr1 83853071 83853214 -113342218 - L1Md_F2 LINE L1 -795 5787 5645 5 1224 5948 86 9 1 chr1 83853214 83854016 -113341416 + L1Md_F2 LINE L1 5762 6569 -13 5 1224 494 320 45 96 chr1 83854240 83854617 -113340815 - MTEa LTR MaLR 0 379 22 5 1224 1090 72 0 0 chr1 83854781 83854920 -113340512 + B1_Mus1 SINE Alu 1 139 -9 5 1224 1020 253 38 17 chr1 83855352 83855589 -113339843 + B4A SINE B4 37 278 -14 5 1224 338 147 0 14 chr1 83855770 83855839 -113339593 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1224 358 218 11 11 chr1 83856388 83856476 -113338956 + L1M5 LINE L1 5578 5665 -459 5 1224 351 0 0 0 chr1 83857612 83857651 -113337781 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1224 2611 125 31 108 chr1 83859523 83860218 -113335214 + RMER17A LTR ERVK 1 747 -4 5 1224 187 374 36 24 chr1 83860225 83860392 -113335040 + L2b LINE L2 2969 3137 -289 5 1224 666 318 36 38 chr1 83860429 83860752 -113334680 + MLT1A LTR MaLR 1 337 -53 5 1224 209 235 20 0 chr1 83860752 83860803 -113334629 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5 1224 241 327 62 26 chr1 83860881 83860994 -113334438 + L2b LINE L2 3190 3306 -69 5 1224 1704 199 78 30 chr1 83861752 83862152 -113333280 - MTD LTR MaLR 0 419 1 5 1224 277 327 0 96 chr1 83862619 83862744 -113332688 + MIR SINE MIR 88 200 -62 5 1224 735 33 0 0 chr1 83863962 83864052 -113331380 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 1224 277 235 135 56 chr1 83865145 83865337 -113330095 + MLT1J2 LTR MaLR 356 549 0 5 1224 445 280 9 0 chr1 83865586 83865693 -113329739 + PB1D9 SINE Alu 8 115 -5 5 1224 1156 279 88 12 chr1 83866193 83866613 -113328819 - Charlie1b DNA MER1_type -48 475 24 5 1224 697 299 75 32 chr1 83866917 83867197 -113328235 - B4A SINE B4 0 292 1 5 1224 325 150 16 16 chr1 83868147 83868208 -113327224 + HAL1-3A_ME LINE L1 1967 2027 -831 5 1224 217 183 48 48 chr1 83868736 83868799 -113326633 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 1224 6115 94 53 7 chr1 83870210 83871122 -113324310 + Lx3_Mus LINE L1 6048 7001 -8 5 1224 327 298 32 0 chr1 83872548 83872642 -113322790 - MLT1B LTR MaLR -10 380 284 5 1224 727 311 127 41 chr1 83872921 83873260 -113322172 - ORR1D2 LTR MaLR -2 368 1 5 1224 1053 289 25 93 chr1 83873293 83873701 -113321731 + MLT1B LTR MaLR 11 390 0 5 1224 676 180 23 30 chr1 83873908 83874040 -113321392 - B1_Mur4 SINE Alu -1 149 19 5 1224 1271 239 70 13 chr1 83874218 83874591 -113320841 - RCHARR1 DNA MER1_type -102 872 479 5 1224 209 119 0 23 chr1 83874698 83874741 -113320691 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 1224 516 282 19 0 chr1 83874997 83875153 -113320279 - Lx8 LINE L1 -440 7033 6875 5 1224 324 248 28 49 chr1 83875665 83875809 -113319623 + L1MC4 LINE L1 6892 7032 -1010 5 1224 2165 115 26 29 chr1 83876354 83876703 -113318729 + Lx LINE L1 6295 6642 -12 5 1224 363 44 0 0 chr1 83876703 83876748 -113318684 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1224 612 0 0 0 chr1 83877010 83877078 -113318354 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 5 1224 782 262 80 80 chr1 83877911 83878288 -113317144 + MTE2a LTR MaLR 3 379 0 5 1224 621 157 74 0 chr1 83878710 83878818 -113316614 + B1_Mus1 SINE Alu 33 148 0 5 1224 238 106 21 21 chr1 83878818 83878866 -113316566 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 5 1224 195 361 93 72 chr1 83879292 83879582 -113315850 - L2c LINE L2 -68 3319 3024 5 1224 328 244 0 47 chr1 83881268 83881354 -113314078 - ID4_ SINE ID -1 82 1 5 1224 187 260 25 49 chr1 83882130 83882211 -113313221 + L3 LINE CR1 159 237 -4252 5 1224 4868 11 0 0 chr1 83882365 83882933 -113312499 - L1Md_T LINE L1 0 6582 6042 5 1224 408 20 0 0 chr1 83883051 83883100 -113312332 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1224 327 297 130 106 chr1 83883269 83883608 -113311824 + ORR1E LTR MaLR 20 366 -4 5 1224 231 379 126 52 chr1 83883744 83884014 -113311418 - ORR1E LTR MaLR -6 353 64 5 1224 277 358 78 63 chr1 83885657 83885724 -113309708 - LTR81B LTR ERV1? -180 1213 1142 5 1224 588 29 0 0 chr1 83885724 83885794 -113309638 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1224 277 358 78 63 chr1 83885794 83885997 -113309435 - LTR81B LTR ERV1? -252 1141 941 5 2 314 340 109 49 chr1 83885999 83886265 -113309167 - B4 SINE B4 0 292 11 5 1225 1552 142 77 22 chr1 83887120 83887394 -113308038 - ORR1C1 LTR MaLR 0 378 90 5 1225 775 161 163 11 chr1 83887392 83887567 -113307865 - ORR1B2 LTR MaLR -154 240 1 5 1225 479 82 14 0 chr1 83887733 83887806 -113307626 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1225 775 254 16 11 chr1 83887852 83888035 -113307397 - B3A SINE B2 -14 184 1 5 1225 319 204 181 11 chr1 83888055 83888149 -113307283 + Lx6 LINE L1 6688 6797 -663 5 1225 1534 294 47 8 chr1 83888153 83888647 -113306785 + Lx5 LINE L1 6538 7050 0 5 1225 298 315 113 0 chr1 83888746 83888949 -113306483 - L1M5 LINE L1 -3043 3103 2878 5 1225 243 359 0 0 chr1 83889124 83889202 -113306230 + PB1D10 SINE Alu 15 92 -25 5 1225 528 68 0 0 chr1 83889353 83889426 -113306006 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1225 629 152 47 9 chr1 83889433 83889539 -113305893 - B1_Mus1 SINE Alu -12 136 27 5 1225 433 271 9 56 chr1 83889571 83889802 -113305630 + Lx9 LINE L1 7401 7620 -24 5 1225 936 164 93 28 chr1 83889978 83890127 -113305305 + B3 SINE B2 2 147 -69 5 1225 648 48 0 0 chr1 83890127 83890211 -113305221 + (CTA)n Simple_repeat Simple_repeat 2 85 0 5 1225 504 59 0 0 chr1 83890211 83890279 -113305153 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1225 936 164 93 28 chr1 83890279 83890310 -113305122 + B3 SINE B2 148 194 -22 5 1225 439 214 36 51 chr1 83890314 83890440 -113304992 + Lx7 LINE L1 7187 7307 -389 5 1225 225 0 0 0 chr1 83890440 83890465 -113304967 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1225 439 214 36 51 chr1 83890465 83890476 -113304956 + Lx7 LINE L1 7308 7321 -375 5 1225 201 127 0 73 chr1 83890499 83890550 -113304882 + T-rich Low_complexity Low_complexity 18 64 0 5 1225 914 121 43 0 chr1 83890550 83890691 -113304741 - B1_Mus1 SINE Alu 0 148 2 5 1225 201 127 0 73 chr1 83890691 83890707 -113304725 + T-rich Low_complexity Low_complexity 2 17 0 5 1225 28 48 0 0 chr1 83890783 83890825 -113304607 + AT_rich Low_complexity Low_complexity 1 42 0 5 1225 360 259 89 0 chr1 83891066 83891201 -113304231 - L1MC4 LINE L1 -430 7612 7466 5 1225 227 204 0 20 chr1 83891237 83891287 -113304145 + CT-rich Low_complexity Low_complexity 3 51 0 5 1225 651 291 80 64 chr1 83891771 83892264 -113303168 + Lx8 LINE L1 6848 7467 -6 5 1225 1163 82 0 0 chr1 83892369 83892515 -113302917 - B1_Mus2 SINE Alu 0 147 2 5 1225 21 36 0 0 chr1 83892680 83892708 -113302724 + AT_rich Low_complexity Low_complexity 1 28 0 5 1225 359 341 201 29 chr1 83892738 83892839 -113302593 + HAL1 LINE L1 1171 1262 -1245 5 1225 486 33 0 0 chr1 83892839 83892899 -113302533 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1225 359 341 201 29 chr1 83892899 83893359 -113302073 + HAL1 LINE L1 1263 1829 -678 5 1225 492 299 136 55 chr1 83893469 83893873 -113301559 + HAL1 LINE L1 1691 2127 -380 5 1225 325 349 62 80 chr1 83895212 83895651 -113299781 - L1MC5 LINE L1 -786 7175 6745 5 1225 1073 274 181 6 chr1 83895896 83896234 -113299198 - MTD LTR MaLR -14 405 9 5 1225 182 310 32 79 chr1 83896234 83896360 -113299072 + L4 LINE RTE 1494 1613 -416 5 1225 272 70 23 0 chr1 83897275 83897318 -113298114 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 5 1225 221 71 0 106 chr1 83897332 83897379 -113298053 + T-rich Low_complexity Low_complexity 6 47 0 5 1225 28 0 0 0 chr1 83898250 83898278 -113297154 + AT_rich Low_complexity Low_complexity 1 28 0 6 1225 402 330 8 0 chr1 83898969 83899087 -113296345 - RSINE1 SINE B4 -44 121 3 6 1225 1181 286 48 20 chr1 83899399 83899756 -113295676 - MTEa LTR MaLR -12 367 1 6 1225 194 397 42 32 chr1 83900467 83900683 -113294749 + L2a LINE L2 3191 3408 -18 6 1225 295 277 0 105 chr1 83901098 83901203 -113294229 - MLT1B LTR MaLR -15 375 282 6 1225 348 240 92 8 chr1 83901739 83901912 -113293520 + L1ME1 LINE L1 5698 5882 -477 6 1225 321 26 0 0 chr1 83901923 83901961 -113293471 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1225 23 86 0 0 chr1 83902351 83902409 -113293023 + AT_rich Low_complexity Low_complexity 1 58 0 6 1225 838 269 0 0 chr1 83902508 83902668 -113292764 + B3A SINE B2 1 160 -38 6 1225 414 0 0 0 chr1 83902676 83902722 -113292710 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1225 532 151 0 14 chr1 83902726 83902874 -113292558 + CT-rich Low_complexity Low_complexity 2 147 0 6 1225 413 36 18 0 chr1 83902874 83902929 -113292503 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1225 414 0 0 0 chr1 83904019 83904065 -113291367 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1225 325 319 53 47 chr1 83906296 83906467 -113288965 - MER58A DNA MER1_type -1 223 52 6 1225 265 268 12 0 chr1 83906644 83906726 -113288706 + L1M2 LINE L1 3747 3829 -2314 6 1225 723 229 7 0 chr1 83906900 83907044 -113288388 + B1_Mm SINE Alu 1 145 -2 6 1225 5598 86 6 36 chr1 83907287 83908312 -113287120 + L1Md_F2 LINE L1 434 1422 -4461 6 1225 8595 28 1 1 chr1 83908308 83909376 -113286056 + L1Md_F2 LINE L1 4519 5586 -297 6 1225 7658 56 12 7 chr1 83909376 83910354 -113285078 + L1Md_F2 LINE L1 5587 6569 -13 6 1225 31 0 0 0 chr1 83910354 83910385 -113285047 + AT_rich Low_complexity Low_complexity 1 31 0 6 1225 297 335 79 59 chr1 83910438 83910743 -113284689 + Lx8 LINE L1 7130 7440 -33 6 1225 246 152 0 0 chr1 83910741 83910787 -113284645 - Lx4A LINE L1 -1101 5957 5912 6 1225 323 189 11 0 chr1 83910786 83910876 -113284556 - Lx4B LINE L1 -940 6118 6028 6 1225 976 78 7 0 chr1 83910870 83911011 -113284421 + Lx4A LINE L1 5705 5846 -1212 6 1225 3619 184 5 3 chr1 83911001 83911649 -113283783 + Lx5 LINE L1 6327 6975 -75 6 1225 1911 201 89 12 chr1 83911650 83912064 -113283368 + RLTR11A LTR ERVK 1 446 -82 6 1225 369 0 0 0 chr1 83912065 83912106 -113283326 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1225 348 336 30 15 chr1 83912151 83912284 -113283148 - B4A SINE B4 -35 257 123 6 1225 266 87 22 0 chr1 83912292 83912338 -113283094 + (CACCC)n Simple_repeat Simple_repeat 4 50 0 6 1225 216 0 0 0 chr1 83912339 83912363 -113283069 + (CCCTG)n Simple_repeat Simple_repeat 2 25 0 6 1225 766 159 6 50 chr1 83912410 83912589 -113282843 - Lx2B LINE L1 0 7000 6830 6 1225 298 294 69 0 chr1 83912594 83912696 -113282736 - B4A SINE B4 -183 109 1 6 1225 408 247 121 55 chr1 83913403 83913660 -113281772 + B4 SINE B4 3 276 -16 6 1225 369 0 0 0 chr1 83913727 83913768 -113281664 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1225 527 327 42 111 chr1 83913828 83913992 -113281440 + B3A SINE B2 5 160 -38 6 1225 204 40 0 0 chr1 83913992 83914017 -113281415 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1225 527 327 42 111 chr1 83914017 83914041 -113281391 + B3A SINE B2 161 180 -18 6 1225 317 281 178 19 chr1 83914092 83914502 -113280930 - L1MD LINE L1 -2988 3158 2684 6 1225 3213 70 14 7 chr1 83915883 83916315 -113279117 + L1Md_F2 LINE L1 6136 6570 -12 6 1225 4276 109 24 7 chr1 83916315 83916990 -113278442 + Lx LINE L1 5910 6595 -59 6 1225 1362 222 97 43 chr1 83919018 83919483 -113275949 + RMER1B Other Other 49 538 -528 6 1225 2838 233 182 12 chr1 83919472 83920311 -113275121 + RMER1A Other Other 42 1023 -7 6 1225 301 298 115 21 chr1 83920339 83920435 -113274997 + PB1D10 SINE Alu 7 111 -6 6 1225 194 62 31 0 chr1 83920442 83920474 -113274958 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 6 1225 306 284 128 63 chr1 83920572 83920806 -113274626 + MTEa LTR MaLR 53 325 -54 6 1225 23 68 0 0 chr1 83920893 83920937 -113274495 + AT_rich Low_complexity Low_complexity 1 44 0 6 1225 632 299 45 108 chr1 83922027 83922370 -113273062 - ORR1E LTR MaLR -11 368 9 6 1225 209 260 150 93 chr1 83922619 83922759 -113272673 - L2b LINE L2 -1 3374 3227 6 1225 26 88 0 0 chr1 83923493 83923561 -113271871 + AT_rich Low_complexity Low_complexity 1 68 0 6 1225 694 281 27 9 chr1 83924165 83924514 -113270918 + L1MB8 LINE L1 5096 5452 -732 6 1225 1110 285 62 28 chr1 83924517 83925095 -113270337 + L1MB8 LINE L1 5567 6164 -14 6 1225 781 236 85 0 chr1 83925596 83925795 -113269637 - B3 SINE B2 0 216 1 6 1225 22 35 0 0 chr1 83925843 83925872 -113269560 + AT_rich Low_complexity Low_complexity 1 29 0 6 1225 267 238 30 60 chr1 83926167 83926222 -113269210 + B1F1 SINE Alu 3 55 -94 6 1225 267 238 30 60 chr1 83926222 83926277 -113269155 + B1F1 SINE Alu 3 55 -94 6 1225 267 238 30 60 chr1 83926277 83926332 -113269100 + B1F1 SINE Alu 3 55 -94 6 1225 267 238 30 60 chr1 83926332 83926399 -113269033 + B1F1 SINE Alu 3 67 -82 6 1225 479 306 0 0 chr1 83926386 83926494 -113268938 + ID_B1 SINE B4 83 190 -34 6 1225 513 0 0 0 chr1 83926682 83926739 -113268693 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 6 1225 317 219 123 0 chr1 83927553 83927626 -113267806 + MTEb LTR MaLR 3 84 -295 6 1225 1128 321 48 0 chr1 83927624 83927754 -113267678 + MTEa LTR MaLR 22 155 -224 6 1225 531 45 0 0 chr1 83927754 83927820 -113267612 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1225 1128 321 48 0 chr1 83927820 83928025 -113267407 + MTEa LTR MaLR 156 372 -7 6 1225 917 253 75 52 chr1 83928622 83928889 -113266543 - MTEb LTR MaLR -2 377 105 6 1225 283 290 30 0 chr1 83929211 83929311 -113266121 + ERVL-B4-int LTR ERVL 2696 2798 -2869 6 1225 456 19 0 0 chr1 83929466 83929519 -113265913 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1225 483 343 51 0 chr1 83929547 83929684 -113265748 - RSINE1 SINE B4 -10 155 12 6 1225 332 262 24 0 chr1 83929785 83929869 -113265563 + ERVL-B4-int LTR ERVL 3055 3140 -2574 6 1225 3700 152 73 3 chr1 83929870 83930517 -113264915 - RLTR17 LTR ERVK 0 692 1 6 1225 8090 33 0 0 chr1 83932452 83933614 -113261818 - L1Md_T LINE L1 0 6582 5421 6 1225 309 345 105 27 chr1 83935088 83935499 -113259933 + L1ME1 LINE L1 5736 6178 -1 6 1225 1698 138 231 0 chr1 83936070 83936390 -113259042 - ORR1B1 LTR MaLR 0 394 1 6 1225 1097 286 91 21 chr1 83936518 83936904 -113258528 + MTD LTR MaLR 5 417 -2 6 1225 585 306 53 32 chr1 83937049 83937238 -113258194 - B3A SINE B2 -5 193 1 6 1225 243 0 0 0 chr1 83937276 83937303 -113258129 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1225 478 235 391 0 chr1 83937336 83937492 -113257940 - ID_B1 SINE B4 -3 221 5 6 1225 830 346 150 10 chr1 83937761 83938348 -113257084 + L2a LINE L2 1455 2123 -1296 6 1225 772 305 34 84 chr1 83938604 83938987 -113256445 + MLT1B LTR MaLR 27 390 0 6 1225 207 0 0 0 chr1 83939120 83939143 -113256289 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1225 264 294 194 0 chr1 83939592 83939752 -113255680 - MLT1J1 LTR MaLR -251 193 3 6 1225 183 309 37 12 chr1 83939768 83939850 -113255582 + L2a LINE L2 3270 3353 -73 6 1225 342 0 0 0 chr1 83939888 83939926 -113255506 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1225 237 308 18 61 chr1 83940471 83940585 -113254847 - MIRb SINE MIR -37 231 123 6 1225 365 278 33 0 chr1 83941082 83941172 -113254260 - B3 SINE B2 0 216 124 6 1225 1299 117 39 0 chr1 83941184 83941389 -113254043 - ORR1C1 LTR MaLR 0 378 166 6 1225 350 313 0 10 chr1 83941391 83941491 -113253941 + G-rich Low_complexity Low_complexity 3 101 0 6 1225 997 183 0 6 chr1 83941496 83941672 -113253760 - ORR1C1 LTR MaLR -192 175 1 6 1225 492 243 72 0 chr1 83941672 83941780 -113253652 - B3 SINE B2 -100 116 1 6 1225 509 333 38 57 chr1 83941802 83942066 -113253366 + MLT1L LTR MaLR 9 267 -343 6 1225 181 222 136 45 chr1 83942338 83942404 -113253028 + L2 LINE L2 2878 2949 -470 6 1225 1250 127 16 0 chr1 83942445 83942634 -113252798 + B2_Mm2 SINE B2 1 192 -3 6 1225 551 296 91 23 chr1 83944325 83944831 -113250601 + L1MA9 LINE L1 5776 6306 -28 6 1225 357 256 13 0 chr1 83945227 83945305 -113250127 + ID4 SINE ID 5 83 0 6 1225 1293 238 21 4 chr1 83945837 83946116 -113249316 - MTD LTR MaLR -91 328 45 6 1225 244 17 15 108 chr1 83946127 83946192 -113249240 + (TTTTTG)n Simple_repeat Simple_repeat 6 64 0 6 1225 809 265 14 33 chr1 83946332 83946543 -113248889 - B3 SINE B2 -8 208 2 6 1225 207 139 0 0 chr1 83948091 83948127 -113247305 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1225 830 95 8 0 chr1 83948128 83948254 -113247178 + (GGAA)n Simple_repeat Simple_repeat 2 128 0 6 1225 664 272 0 37 chr1 83948916 83949107 -113246325 + B3 SINE B2 2 185 -31 6 1225 433 352 45 11 chr1 83949343 83949521 -113245911 + B4A SINE B4 109 292 0 6 1225 293 260 109 44 chr1 83949672 83949809 -113245623 - MIR SINE MIR -73 189 44 6 1225 1157 69 0 0 chr1 83950116 83950260 -113245172 + B1_Mus2 SINE Alu 2 145 -2 6 1225 1257 61 0 0 chr1 83950260 83950423 -113245009 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 6 1225 1048 312 121 40 chr1 83952292 83953102 -113242330 + Lx8 LINE L1 6588 7463 -10 6 1225 214 256 0 0 chr1 83953131 83953174 -113242258 + polypurine Low_complexity Low_complexity 3 45 0 6 1225 392 264 110 28 chr1 83953537 83953719 -113241713 + L1MA8 LINE L1 6008 6210 -81 6 1225 347 70 0 50 chr1 83953719 83953779 -113241653 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1225 392 264 110 28 chr1 83953779 83953814 -113241618 + L1MA8 LINE L1 6211 6243 -48 6 1225 322 38 19 19 chr1 83954082 83954135 -113241297 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 6 1225 886 78 0 0 chr1 83954140 83954255 -113241177 - B1_Mm SINE Alu -6 141 27 6 1225 792 219 101 10 chr1 83954257 83954455 -113240977 - B3 SINE B2 0 216 1 6 1225 324 277 12 0 chr1 83954848 83954931 -113240501 + B1F SINE Alu 58 141 -8 7 1225 550 338 48 5 chr1 83955944 83956152 -113239280 - MER58A DNA MER1_type -1 223 7 7 1225 23 0 0 0 chr1 83956839 83956862 -113238570 + AT_rich Low_complexity Low_complexity 1 23 0 7 1225 189 0 0 0 chr1 83957135 83957156 -113238276 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1225 280 238 24 36 chr1 83957182 83957265 -113238167 + MTD-int LTR MaLR 1172 1253 -5 7 1225 1985 235 7 10 chr1 83957275 83957687 -113237745 + MTD LTR MaLR 1 411 -8 7 1225 225 0 0 0 chr1 83958346 83958371 -113237061 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 7 1225 213 65 0 0 chr1 83959899 83959930 -113235502 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 7 1225 261 353 95 32 chr1 83960344 83960502 -113234930 + MLT1K LTR MaLR 337 504 -91 7 1225 7003 107 16 1 chr1 83960854 83961864 -113233568 + Lx2 LINE L1 5972 6996 -1 7 1225 7376 59 4 10 chr1 83962089 83963117 -113232315 + L1_Mus2 LINE L1 5545 6566 0 7 1225 193 324 27 27 chr1 83963724 83963797 -113231635 + L4 LINE RTE 1106 1178 -851 7 1225 273 267 17 0 chr1 83968358 83968418 -113227014 + PB1D7 SINE Alu 10 70 -50 7 1225 329 318 185 28 chr1 83968417 83968595 -113226837 - ID_B1 SINE B4 -11 213 8 7 1225 531 56 0 0 chr1 83969069 83969140 -113226292 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1225 21 0 0 0 chr1 83969584 83969605 -113225827 + AT_rich Low_complexity Low_complexity 1 21 0 7 1225 6625 121 38 5 chr1 83969623 83971051 -113224381 - L1_Mus4 LINE L1 -5 6631 5141 7 1225 1261 225 169 9 chr1 83971636 83971986 -113223446 - MTD LTR MaLR -13 406 1 7 1225 222 161 0 67 chr1 83972100 83972160 -113223272 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 7 1225 22 0 0 0 chr1 83972190 83972212 -113223220 + AT_rich Low_complexity Low_complexity 1 22 0 7 1225 355 286 30 10 chr1 83972301 83972400 -113223032 - ID_B1 SINE B4 -38 186 86 7 1225 30 27 0 0 chr1 83973432 83973469 -113221963 + AT_rich Low_complexity Low_complexity 1 37 0 7 1225 1170 81 0 0 chr1 83973996 83974144 -113221288 + B1_Mus1 SINE Alu 1 148 0 7 1225 687 155 0 0 chr1 83974968 83975123 -113220309 + GA-rich Low_complexity Low_complexity 2 156 0 7 1225 704 288 89 95 chr1 83975620 83975841 -113219591 + L1MC3 LINE L1 7077 7329 -456 7 1225 519 301 20 30 chr1 83975841 83976040 -113219392 + B3A SINE B2 2 198 0 7 1225 704 288 89 95 chr1 83976040 83976524 -113218908 + L1MC3 LINE L1 7330 7778 -7 7 1225 514 196 54 0 chr1 83976556 83976724 -113218708 - Lx9 LINE L1 -2 7642 7466 7 1225 2885 66 200 9 chr1 83977682 83978112 -113217320 - RLTR1B LTR ERV1 0 512 1 7 1225 63888 18 0 0 chr1 83978112 83985667 -113209765 - MMERGLN-int LTR ERV1 0 7556 1 7 1225 2885 66 200 9 chr1 83985667 83986097 -113209335 - RLTR1B LTR ERV1 0 512 1 7 1225 734 271 14 81 chr1 83986098 83986199 -113209233 - ID_B1 SINE B4 -28 196 111 7 1225 2383 128 22 75 chr1 83986199 83986614 -113208818 - RLTR9C LTR ERVK 0 393 1 7 1225 734 271 14 81 chr1 83986614 83986721 -113208711 - ID_B1 SINE B4 -114 110 2 7 1225 530 318 70 6 chr1 83987728 83987899 -113207533 + B4A SINE B4 21 202 -90 7 1225 587 222 68 0 chr1 83987896 83988013 -113207419 + B3 SINE B2 6 130 -86 7 1225 216 306 67 82 chr1 83988293 83988428 -113207004 + L3 LINE CR1 3538 3670 -819 7 1225 21 0 0 0 chr1 83988603 83988624 -113206808 + AT_rich Low_complexity Low_complexity 1 21 0 7 1225 344 219 0 14 chr1 83988860 83988934 -113206498 - B4A SINE B4 -218 74 2 7 1225 402 74 0 0 chr1 83989365 83989419 -113206013 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1225 232 174 57 14 chr1 83990299 83990369 -113205063 - L1MC4 LINE L1 0 8042 7970 7 1225 504 296 134 45 chr1 83990461 83990968 -113204464 - L1MC4 LINE L1 -136 7906 7355 7 1225 23 33 0 0 chr1 83991022 83991052 -113204380 + AT_rich Low_complexity Low_complexity 1 30 0 7 1225 318 258 96 11 chr1 83991064 83991158 -113204274 - PB1 SINE Alu -7 120 19 7 1225 412 345 186 23 chr1 83991876 83992306 -113203126 - L1MC4 LINE L1 -4759 1551 1052 7 1225 420 316 169 19 chr1 83992328 83992418 -113203014 - Lx8 LINE L1 -1 7472 7379 7 1225 315 0 0 0 chr1 83992418 83992453 -113202979 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1225 420 316 169 19 chr1 83992453 83992782 -113202650 - Lx8 LINE L1 -95 7378 6990 7 1225 217 264 19 0 chr1 83993370 83993423 -113202009 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 7 1225 434 301 156 0 chr1 83993423 83993622 -113201810 - L1MC4 LINE L1 -4996 1219 990 7 1225 346 313 75 22 chr1 83993919 83994053 -113201379 - L1MC4 LINE L1 -5675 540 400 7 1225 330 152 0 0 chr1 83994169 83994228 -113201204 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 7 1225 1465 262 64 10 chr1 83995604 83995997 -113199435 - MTD LTR MaLR 0 419 6 7 1225 282 253 12 24 chr1 83996006 83996091 -113199341 - MTD-int LTR MaLR -4 1254 1171 7 1225 4414 89 123 72 chr1 83996089 83996920 -113198512 - RMER17A2 LTR ERVK -27 879 7 7 1225 3012 107 0 5 chr1 83996920 83997352 -113198080 + Lx LINE L1 6222 6651 -3 7 1225 1476 283 68 81 chr1 83997374 83998395 -113197037 - MTD-int LTR MaLR -115 1465 1 7 1225 444 232 76 0 chr1 83998398 83998516 -113196916 - MTD LTR MaLR -16 403 256 7 1225 464 222 92 31 chr1 83998592 83998722 -113196710 - MTD LTR MaLR -277 142 5 7 1225 183 100 0 0 chr1 83999054 83999084 -113196348 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1225 450 252 84 34 chr1 83999459 83999578 -113195854 - RMER20B LTR ERVK -502 125 1 7 1225 366 302 10 0 chr1 84000927 84001023 -113194409 - MTEa LTR MaLR -4 375 279 1 1225 2174 262 144 73 chr1 84001526 84002569 -113192863 - Lx8 LINE L1 -223 7250 6134 2 1225 4805 65 38 3 chr1 84002603 84003254 -113192178 - L1Md_F2 LINE L1 -1 6581 5908 3 1225 279 114 0 0 chr1 84003276 84003320 -113192112 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 4 1225 1193 54 0 7 chr1 84003320 84003469 -113191963 - B1_Mus1 SINE Alu 0 148 1 5 1225 593 301 62 31 chr1 84003662 84003854 -113191578 - B3 SINE B2 -11 205 8 6 1225 275 321 9 0 chr1 84003886 84003998 -113191434 - L1_Mur3 LINE L1 -858 5022 4910 7 1225 246 306 165 35 chr1 84005084 84005199 -113190233 + RSINE1 SINE B4 3 132 -33 8 1225 315 368 8 39 chr1 84006641 84006771 -113188661 + MER45C DNA Tip100 19 144 -809 9 1225 487 0 32 0 chr1 84007318 84007381 -113188051 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1225 327 178 54 14 chr1 84007796 84007870 -113187562 + ID4_ SINE ID 4 80 -3 1 1225 255 351 13 0 chr1 84007976 84008053 -113187379 + PB1D10 SINE Alu 29 106 -11 1 1225 25 0 0 0 chr1 84008604 84008629 -113186803 + AT_rich Low_complexity Low_complexity 1 25 0 1 1225 4606 55 0 20 chr1 84008629 84009225 -113186207 - L1Md_F2 LINE L1 -6 6576 5993 1 1225 1880 55 4 0 chr1 84009225 84009480 -113185952 + L1Md_F2 LINE L1 5724 5979 -603 1 1225 294 273 67 15 chr1 84010575 84010709 -113184723 - Charlie1a DNA MER1_type -16 1439 1299 1 1225 1298 48 0 0 chr1 84010709 84010874 -113184558 + L1Md_F2 LINE L1 5422 5586 -297 1 1225 7844 47 11 8 chr1 84010874 84011855 -113183577 + L1Md_F2 LINE L1 5587 6570 -12 1 1225 465 281 76 33 chr1 84011858 84012134 -113183298 - Charlie1a DNA MER1_type -142 1313 1026 1 1225 305 382 7 13 chr1 84012257 84012411 -113183021 + MER2B DNA MER2_type 183 335 -1 1 1225 1539 299 157 26 chr1 84012441 84013276 -113182156 - Charlie1a DNA MER1_type -473 982 39 1 1225 443 342 28 112 chr1 84013611 84013988 -113181444 + MLT1A LTR MaLR 5 334 -74 1 1225 433 354 67 30 chr1 84014011 84014279 -113181153 - MLT1A-int LTR MaLR -154 1217 940 1 1225 405 320 87 80 chr1 84014278 84014521 -113180911 - MLT1A LTR MaLR -5 385 127 1 1225 257 171 0 0 chr1 84015165 84015206 -113180226 + T-rich Low_complexity Low_complexity 1 41 0 2 1225 511 159 32 19 chr1 84015215 84015369 -113180063 + CT-rich Low_complexity Low_complexity 4 159 0 2 1225 477 50 0 0 chr1 84015391 84015451 -113179981 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 1225 3018 62 0 10 chr1 84015749 84016143 -113179289 - L1Md_F2 LINE L1 -16 6566 6177 2 1225 419 314 92 0 chr1 84016203 84016356 -113179076 + MIR SINE MIR 23 189 -73 2 1226 1959 164 30 14 chr1 84017257 84017621 -113177811 + ORR1D1 LTR MaLR 1 370 -4 2 1226 680 299 40 76 chr1 84018427 84018728 -113176704 - B4 SINE B4 -2 290 1 2 1226 1226 271 105 16 chr1 84019731 84020103 -113175329 - MTD LTR MaLR -14 405 1 2 1226 714 200 0 0 chr1 84020425 84020545 -113174887 + PB1D9 SINE Alu 1 120 0 2 1226 1451 104 5 0 chr1 84021589 84021801 -113173631 - L1_Mur2 LINE L1 -135 5742 5530 2 1226 6074 182 27 6 chr1 84021801 84023015 -113172417 + Lx2B LINE L1 5761 7000 0 3 1226 254 290 51 51 chr1 84024019 84024117 -113171315 - B1_Mus2 SINE Alu 0 147 50 3 1226 288 0 0 0 chr1 84024187 84024219 -113171213 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1226 512 291 136 23 chr1 84024259 84024516 -113170916 - B4A SINE B4 -4 288 3 3 1226 362 320 194 0 chr1 84024853 84025028 -113170404 - RMER15 LTR ERVL -45 530 322 3 1226 325 283 66 59 chr1 84025255 84025463 -113169969 + MLT1B LTR MaLR 91 309 -158 3 1226 329 352 31 15 chr1 84025477 84025607 -113169825 + MLT1B LTR MaLR 255 386 -4 3 1226 280 314 56 56 chr1 84025828 84026024 -113169408 + MER33 DNA MER1_type 129 324 0 3 1226 876 288 65 90 chr1 84026218 84026745 -113168687 + RLTR18 LTR ERVK 17 616 0 3 1226 1076 119 6 0 chr1 84027919 84028096 -113167336 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 1226 657 0 0 0 chr1 84028096 84028169 -113167263 + (GGA)n Simple_repeat Simple_repeat 1 73 0 4 1226 977 276 70 16 chr1 84029498 84029811 -113165621 + ORR1E LTR MaLR 2 331 -28 4 1226 2009 202 24 15 chr1 84029818 84030235 -113165197 - MTD LTR MaLR -14 405 1 4 1226 217 326 10 20 chr1 84030388 84030488 -113164944 + GA-rich Low_complexity Low_complexity 2 100 0 4 1226 258 81 0 0 chr1 84030801 84030838 -113164594 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1226 742 263 0 45 chr1 84031242 84031421 -113164011 - B3A SINE B2 -26 172 2 4 1226 309 269 46 9 chr1 84032226 84032335 -113163097 + CT-rich Low_complexity Low_complexity 4 116 0 4 1226 22 0 0 0 chr1 84032846 84032868 -113162564 + AT_rich Low_complexity Low_complexity 1 22 0 4 1226 324 127 0 0 chr1 84033122 84033177 -113162255 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1226 593 291 8 0 chr1 84035828 84035962 -113159470 + RSINE1 SINE B4 8 142 -23 4 1226 1704 243 27 2 chr1 84036449 84036858 -113158574 + MTD LTR MaLR 1 419 0 5 1226 981 236 161 62 chr1 84037049 84037402 -113158030 + MTD LTR MaLR 11 398 -21 5 1226 428 266 97 21 chr1 84037912 84038143 -113157289 + L1MB2 LINE L1 5718 5975 -196 5 1226 261 57 0 0 chr1 84038292 84038327 -113157105 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1226 578 287 15 0 chr1 84039103 84039239 -113156193 - B1_Mur1 SINE Alu -6 143 6 5 1226 339 328 63 25 chr1 84039654 84039892 -113155540 + L1MA6 LINE L1 5925 6171 -129 5 1226 489 17 0 0 chr1 84041164 84041222 -113154210 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1226 893 79 8 0 chr1 84041222 84041349 -113154083 + (GAAAA)n Simple_repeat Simple_repeat 5 132 0 5 1226 229 279 149 60 chr1 84041936 84042104 -113153328 + LTRIS2 LTR ERV1 72 254 -310 5 1226 21 36 0 0 chr1 84042427 84042455 -113152977 + AT_rich Low_complexity Low_complexity 1 28 0 5 1226 333 307 61 48 chr1 84042739 84042886 -113152546 + MLT2C2 LTR ERVL 18 166 -298 6 1226 249 83 0 0 chr1 84043228 84043264 -113152168 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1226 478 197 19 13 chr1 84043310 84043464 -113151968 + (TA)n Simple_repeat Simple_repeat 1 155 0 6 1226 4791 95 33 0 chr1 84044025 84044690 -113150742 + Lx2A1 LINE L1 6317 7003 -5 6 1226 748 283 48 44 chr1 84045116 84045364 -113150068 + Lx9 LINE L1 6881 7129 -515 6 1226 21 36 0 0 chr1 84045368 84045396 -113150036 + AT_rich Low_complexity Low_complexity 1 28 0 6 1226 361 129 0 0 chr1 84045517 84045579 -113149853 + RLTR11A2 LTR ERVK 1 62 -465 6 1226 247 263 88 19 chr1 84045650 84045809 -113149623 + L1MC4 LINE L1 5623 5792 -2090 6 1226 312 288 138 56 chr1 84046407 84046602 -113148830 + L1MC4 LINE L1 6484 6694 -1188 6 1226 610 313 179 15 chr1 84046630 84047087 -113148345 + L1MC4 LINE L1 6809 7340 -702 6 1226 2015 45 0 0 chr1 84047273 84047517 -113147915 - L1Md_T LINE L1 0 6582 6339 6 1226 300 326 75 8 chr1 84047643 84047776 -113147656 + MTEa LTR MaLR 238 379 0 6 1226 253 262 34 138 chr1 84047920 84047939 -113147493 + PB1D10 SINE Alu 7 53 -67 7 1226 332 253 39 26 chr1 84047939 84048016 -113147416 + ID_B1 SINE B4 102 179 -45 7 1226 253 262 34 138 chr1 84048016 84048036 -113147396 + PB1D10 SINE Alu 54 110 -10 7 1226 369 0 0 0 chr1 84050594 84050635 -113144797 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1226 387 0 0 0 chr1 84050635 84050677 -113144755 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1226 265 250 10 20 chr1 84053233 84053331 -113142101 + CT-rich Low_complexity Low_complexity 3 99 0 7 1226 4699 46 68 14 chr1 84054293 84054913 -113140519 + L1Md_F2 LINE L1 5928 6580 -2 7 1226 338 250 20 20 chr1 84055516 84055614 -113139818 + GA-rich Low_complexity Low_complexity 1 98 0 7 1226 763 320 97 13 chr1 84059640 84060020 -113135412 + MER57F LTR ERV1 25 436 0 7 1226 202 320 128 11 chr1 84061188 84061331 -113134101 - MIR SINE MIR -18 250 96 7 1226 2421 54 0 0 chr1 84062348 84062627 -113132805 + L1_Mus1 LINE L1 6289 6567 0 7 1226 333 0 0 0 chr1 84065525 84065562 -113129870 + (TTG)n Simple_repeat Simple_repeat 2 38 0 8 1226 203 0 0 36 chr1 84066078 84066106 -113129326 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1226 747 152 72 0 chr1 84066119 84066244 -113129188 - B1_Mur4 SINE Alu -10 140 7 8 1226 455 197 140 42 chr1 84066280 84066423 -113129009 + Lx8 LINE L1 7204 7360 -113 8 1226 437 308 67 8 chr1 84066670 84066804 -113128628 - B1_Mur2 SINE Alu -5 144 3 8 1226 22 0 0 0 chr1 84066908 84066930 -113128502 + AT_rich Low_complexity Low_complexity 1 22 0 8 1226 24 53 0 0 chr1 84067001 84067039 -113128393 + AT_rich Low_complexity Low_complexity 1 38 0 8 1226 335 169 70 0 chr1 84067043 84067114 -113128318 - Lx8 LINE L1 -1 7472 7397 8 1226 405 299 8 8 chr1 84067131 84067249 -113128183 - Lx8 LINE L1 -150 7323 7206 8 1226 253 57 0 0 chr1 84067619 84067654 -113127778 - L1_Mm LINE L1 -2763 3120 3086 8 1226 5525 55 5 1 chr1 84067654 84068304 -113127128 + L1Md_F2 LINE L1 5929 6580 -2 8 1226 26 0 0 0 chr1 84068304 84068330 -113127102 + AT_rich Low_complexity Low_complexity 1 26 0 9 1226 273 151 0 0 chr1 84069519 84069572 -113125860 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 9 1226 2767 139 2 59 chr1 84070428 84070510 -113124922 + MTC LTR MaLR 1 82 -339 9 1226 1095 71 43 0 chr1 84070510 84070650 -113124782 + B1_Mus2 SINE Alu 2 147 0 9 1226 2767 139 2 59 chr1 84070650 84071011 -113124421 + MTC LTR MaLR 83 419 -2 9 1226 932 320 18 30 chr1 84071526 84071864 -113123568 + MLT1E3 LTR MaLR 282 615 -9 9 1226 1228 230 15 26 chr1 84072750 84073018 -113122414 + ORR1D2 LTR MaLR 1 265 -105 9 1226 281 134 129 43 chr1 84073019 84073089 -113122343 + MTC LTR MaLR 7 82 -337 9 1226 1048 99 0 0 chr1 84073155 84073307 -113122125 + URR1B DNA MER1_type 73 224 -1 9 1226 1470 219 47 38 chr1 84073320 84073638 -113121794 + MTC LTR MaLR 101 421 0 9 1226 586 129 43 0 chr1 84073642 84073735 -113121697 + ORR1D2 LTR MaLR 261 357 -13 9 1226 23 54 0 0 chr1 84075624 84075661 -113119771 + AT_rich Low_complexity Low_complexity 1 37 0 9 1226 471 220 50 10 chr1 84075898 84075999 -113119433 - PB1D7 SINE Alu -7 113 9 9 1226 26 50 0 0 chr1 84077164 84077204 -113118228 + AT_rich Low_complexity Low_complexity 1 40 0 1 1226 21 36 0 0 chr1 84077437 84077465 -113117967 + AT_rich Low_complexity Low_complexity 1 28 0 1 1226 3830 102 35 19 chr1 84077481 84078061 -113117371 - Lx3A LINE L1 -31 6950 6362 1 1226 4113 87 75 7 chr1 84078038 84078640 -113116792 + Lx3_Mus LINE L1 5745 6387 -622 1 1226 215 158 0 0 chr1 84078857 84078895 -113116537 - L2a LINE L2 -15 3411 3374 1 1226 525 299 171 45 chr1 84079315 84079602 -113115830 + MLT1A0 LTR MaLR 10 332 -33 1 1226 259 338 37 99 chr1 84079756 84079917 -113115515 + MTEa LTR MaLR 1 151 -228 1 1226 552 126 0 0 chr1 84079961 84080048 -113115384 + (TCCC)n Simple_repeat Simple_repeat 2 88 0 1 1226 590 85 0 21 chr1 84081080 84081176 -113114256 - L1Md_F2 LINE L1 0 6582 6489 1 1226 180 0 0 0 chr1 84081580 84081600 -113113832 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1226 1239 61 0 0 chr1 84081600 84081747 -113113685 - B1_Mus2 SINE Alu 0 147 1 1 1226 634 287 32 6 chr1 84081892 84082050 -113113382 + Lx8 LINE L1 6481 6642 -831 1 1226 1071 238 73 22 chr1 84082060 84082279 -113113153 + MTE2a LTR MaLR 78 305 -74 1 1226 246 32 0 0 chr1 84082279 84082310 -113113122 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1226 1071 238 73 22 chr1 84082310 84082365 -113113067 + MTE2a LTR MaLR 306 365 -14 1 1226 539 274 103 10 chr1 84082380 84082583 -113112849 - RMER5 LTR ERV1 -273 261 40 1 1226 1144 263 62 25 chr1 84084975 84085330 -113110102 - MTE2a LTR MaLR -2 377 10 1 1226 1013 111 0 27 chr1 84086770 84086955 -113108477 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1226 189 0 0 0 chr1 84086956 84086977 -113108455 + (TTCTCC)n Simple_repeat Simple_repeat 3 23 0 1 1226 24 32 0 0 chr1 84087378 84087409 -113108023 + AT_rich Low_complexity Low_complexity 1 31 0 1 1226 667 294 21 21 chr1 84087417 84087605 -113107827 - ID_B1 SINE B4 -3 221 34 1 1226 1660 201 17 3 chr1 84087590 84087885 -113107547 + MTD LTR MaLR 87 385 -34 1 1226 279 0 0 0 chr1 84087948 84087979 -113107453 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 1 1226 565 302 50 77 chr1 84088112 84088410 -113107022 + MLT1A0 LTR MaLR 23 312 -53 1 1226 508 309 38 117 chr1 84088625 84088915 -113106517 - B4 SINE B4 -17 275 9 1 1226 368 309 30 67 chr1 84090176 84090311 -113105121 - Tigger5 DNA MER2_type -2164 242 113 1 1226 360 368 6 17 chr1 84090308 84090485 -113104947 + MLT1A0 LTR MaLR 272 446 -59 1 1226 324 0 0 0 chr1 84091228 84091264 -113104168 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1226 414 0 0 0 chr1 84091264 84091309 -113104123 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1226 1201 81 0 7 chr1 84091339 84091488 -113103944 - B1_Mus1 SINE Alu 0 148 1 1 1226 1003 76 14 7 chr1 84091914 84092059 -113103373 - L1Md_F3 LINE L1 0 6584 6439 1 1226 786 72 0 0 chr1 84092059 84092156 -113103276 + L1Md_F3 LINE L1 6376 6472 -112 1 1226 239 190 69 0 chr1 84093046 84093104 -113102328 + (CATG)n Simple_repeat Simple_repeat 1 62 0 1 1226 823 264 0 22 chr1 84093110 84093292 -113102140 - B3A SINE B2 -16 182 5 1 1226 217 283 17 0 chr1 84093361 84093421 -113102011 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 1 1226 1710 148 64 90 chr1 84094653 84095010 -113100422 + ORR1B1 LTR MaLR 47 394 0 1 1226 3464 274 35 33 chr1 84095121 84096142 -113099290 - Lx8 LINE L1 -147 7326 6304 1 1226 1278 80 0 6 chr1 84096271 84096448 -113098984 + B2_Mm2 SINE B2 15 190 -5 1 1226 256 326 83 17 chr1 84096574 84096755 -113098677 - MIR SINE MIR -59 203 11 1 1226 1216 183 44 15 chr1 84097424 84097629 -113097803 + B3 SINE B2 1 211 -5 1 1226 267 211 0 123 chr1 84098143 84098208 -113097224 + ID2 SINE ID 27 83 0 1 1226 390 289 16 0 chr1 84098376 84098497 -113096935 + MLT1A LTR MaLR 1 123 -242 1 1226 787 301 58 80 chr1 84098503 84098868 -113096564 - ORR1E LTR MaLR 0 359 3 1 1226 410 328 93 19 chr1 84098889 84099094 -113096338 + MLT1A LTR MaLR 155 374 0 1 1226 244 270 162 0 chr1 84099146 84099220 -113096212 + MLT1A1 LTR MaLR 243 328 -80 1 1226 312 263 0 0 chr1 84099214 84099290 -113096142 + MTEb LTR MaLR 304 379 0 1 1226 396 304 25 12 chr1 84099778 84099938 -113095494 + MER5A1 DNA MER1_type 4 165 -1 1 1226 246 236 27 14 chr1 84100999 84101072 -113094360 + MTE-int LTR MaLR 168 241 -1339 1 1226 1180 354 77 50 chr1 84101114 84101768 -113093664 + MTE-int LTR MaLR 787 1457 -123 1 1226 234 291 47 37 chr1 84101916 84102023 -113093409 + MLT2B3 LTR ERVL 4 111 -443 1 1226 845 316 92 48 chr1 84102364 84102757 -113092675 + MTD LTR MaLR 10 419 0 1 1226 21 82 0 0 chr1 84102972 84103021 -113092411 + AT_rich Low_complexity Low_complexity 1 49 0 1 1226 722 206 20 33 chr1 84103027 84103178 -113092254 + B1F SINE Alu 1 149 0 1 1226 1854 191 45 21 chr1 84104677 84105056 -113090376 + MTD LTR MaLR 32 419 0 1 1226 1002 274 29 36 chr1 84105806 84106082 -113089350 + B4A SINE B4 1 274 -18 1 1226 199 300 53 53 chr1 84107016 84107111 -113088321 - MIR SINE MIR -119 143 49 1 1226 865 298 44 47 chr1 84107151 84107514 -113087918 + MLT2D LTR ERVL 4 365 -49 1 1226 239 250 27 14 chr1 84107575 84107648 -113087784 + GA-rich Low_complexity Low_complexity 5 78 0 1 1226 371 371 69 58 chr1 84109264 84109610 -113085822 + ORR1E LTR MaLR 3 352 -7 1 1226 204 341 34 0 chr1 84110170 84110258 -113085174 + L2c LINE L2 3002 3092 -295 1 1226 360 0 0 0 chr1 84111514 84111554 -113083878 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1226 511 304 107 62 chr1 84111554 84111862 -113083570 + MLT2B2 LTR ERVL 100 421 -94 1 1226 280 298 0 61 chr1 84111863 84111995 -113083437 - L1MB8 LINE L1 -292 5886 5763 1 1226 306 337 110 13 chr1 84113211 84113474 -113081958 - MLT1J1 LTR MaLR -132 316 25 1 1226 419 274 45 61 chr1 84113860 84113992 -113081440 - MER20 DNA MER1_type -88 131 2 1 1226 215 95 0 45 chr1 84115053 84115097 -113080335 + (TATAA)n Simple_repeat Simple_repeat 3 44 0 1 1226 209 271 110 40 chr1 84115141 84115241 -113080191 - MIRb SINE MIR -127 141 35 1 1226 278 238 82 45 chr1 84116000 84116110 -113079322 + B4 SINE B4 169 282 -10 1 1226 252 0 0 0 chr1 84116139 84116167 -113079265 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1226 520 309 62 5 chr1 84116307 84116515 -113078917 - MLT1C LTR MaLR -247 220 1 1 1226 820 236 18 24 chr1 84116808 84116957 -113078475 + B3A SINE B2 1 151 -47 1 1226 209 108 27 0 chr1 84116957 84116994 -113078438 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1226 820 236 18 24 chr1 84116994 84117013 -113078419 + B3A SINE B2 152 168 -30 1 1226 233 308 77 0 chr1 84117789 84117854 -113077578 - ID4_ SINE ID -11 72 3 1 1226 39491 4 0 0 chr1 84118282 84123654 -113071778 + L1Md_A LINE L1 214 5586 -297 1 1226 9658 1 0 0 chr1 84123654 84124732 -113070700 + L1Md_A LINE L1 5587 6582 0 1 1226 261 0 0 0 chr1 84124802 84124831 -113070601 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1226 247 338 49 42 chr1 84125683 84125825 -113069607 - MER20 DNA MER1_type -52 167 25 1 1226 486 0 0 0 chr1 84126249 84126303 -113069129 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1226 414 0 0 0 chr1 84126303 84126348 -113069084 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1226 226 297 0 0 chr1 84126470 84126534 -113068898 + GA-rich Low_complexity Low_complexity 3 66 0 1 1226 647 237 7 40 chr1 84126817 84126997 -113068435 + L1MB7 LINE L1 5842 6017 -167 1 1226 527 78 13 0 chr1 84127495 84127572 -113067860 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 1 1226 240 238 0 0 chr1 84127609 84127672 -113067760 + (ATG)n Simple_repeat Simple_repeat 1 63 0 1 1226 648 335 99 112 chr1 84128222 84128776 -113066656 + MLT1F2 LTR MaLR 1 547 -13 1 1226 213 39 0 0 chr1 84129388 84129414 -113066018 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1226 290 26 0 25 chr1 84130008 84130048 -113065384 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1226 681 176 0 0 chr1 84130598 84130740 -113064692 + (TG)n Simple_repeat Simple_repeat 2 143 0 1 1226 990 241 52 19 chr1 84130758 84131025 -113064407 - B4A SINE B4 -9 283 8 1 1226 2494 159 5 21 chr1 84131642 84132066 -113063366 - Lx LINE L1 -3 6651 6235 1 1226 340 290 45 91 chr1 84132285 84132505 -113062927 + Charlie7 DNA MER1_type 27 236 -2376 1 1226 347 79 32 0 chr1 84132990 84133053 -113062379 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 1226 290 200 0 39 chr1 84133110 84133188 -113062244 + CT-rich Low_complexity Low_complexity 3 77 0 1 1226 7533 213 52 80 chr1 84133188 84133514 -113061918 - Lx7 LINE L1 -45 7651 7368 1 1226 606 51 0 0 chr1 84133514 84133592 -113061840 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1226 7533 213 52 80 chr1 84133592 84133815 -113061617 - Lx7 LINE L1 -329 7367 7158 1 1226 976 108 54 0 chr1 84133815 84133944 -113061488 + B1_Mus1 SINE Alu 1 136 -12 1 1226 743 0 11 0 chr1 84133944 84134031 -113061401 + (TAAAA)n Simple_repeat Simple_repeat 2 89 0 1 1226 7533 213 52 80 chr1 84134031 84135171 -113060261 - Lx7 LINE L1 -539 7157 6024 1 1226 324 0 0 0 chr1 84135171 84135207 -113060225 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1226 7533 213 52 80 chr1 84135207 84135577 -113059855 - Lx7 LINE L1 -1673 6023 5649 1 1226 3847 160 210 11 chr1 84135590 84136553 -113058879 - L1_Mur3 LINE L1 -2587 3293 2140 1 1226 4215 152 20 18 chr1 84136539 84137650 -113057782 - L1_Mur3 LINE L1 -3965 1915 794 1 1226 676 290 86 20 chr1 84140486 84140683 -113054749 - B3 SINE B2 -6 210 1 1 1226 949 75 0 50 chr1 84140816 84140957 -113054475 + L1Md_F2 LINE L1 6437 6570 -12 1 1226 416 369 21 29 chr1 84141089 84141388 -113054044 + MER2 DNA MER2_type 7 319 -26 1 1226 716 319 106 60 chr1 84141462 84141534 -113053898 + MLT1D LTR MaLR 9 84 -421 1 1226 2005 222 72 12 chr1 84141534 84142031 -113053401 + RLTR11A2 LTR ERVK 1 527 0 1 1226 716 319 106 60 chr1 84142031 84142394 -113053038 + MLT1D LTR MaLR 85 464 -41 1 1226 500 318 23 0 chr1 84142864 84142993 -113052439 - MTE2b LTR MaLR -52 327 196 1 1226 876 161 28 7 chr1 84143115 84143259 -113052173 + B1_Mur3 SINE Alu 3 149 0 1 1226 217 51 25 25 chr1 84143259 84143299 -113052133 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1226 334 325 42 25 chr1 84144003 84144123 -113051309 + RSINE1 SINE B4 5 126 -39 2 1226 315 311 90 90 chr1 84144375 84144520 -113050912 + MTEa LTR MaLR 1 145 -234 2 1226 294 229 14 14 chr1 84144756 84144827 -113050605 + MTEa LTR MaLR 307 377 -2 2 1226 198 0 0 0 chr1 84144946 84144968 -113050464 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1226 2169 188 32 12 chr1 84145259 84145662 -113049770 + MTD LTR MaLR 1 411 -8 2 1226 5889 77 17 11 chr1 84145988 84146749 -113048683 - L1_Mus3 LINE L1 -1 6637 5872 2 1226 345 24 0 0 chr1 84147097 84147139 -113048293 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1226 298 227 23 70 chr1 84147491 84147619 -113047813 + L1MA5 LINE L1 5162 5283 -860 2 1226 31 68 0 0 chr1 84147659 84147718 -113047714 + AT_rich Low_complexity Low_complexity 1 59 0 2 1226 823 314 52 64 chr1 84147718 84148179 -113047253 + L1MA5 LINE L1 5258 5732 -568 2 153 2632 144 13 5 chr1 84148179 84148570 -113046862 - ORR1B1 LTR MaLR 0 394 1 2 1227 823 311 48 67 chr1 84148570 84148781 -113046651 + L1MA5 LINE L1 5733 5918 -382 2 1227 686 293 90 57 chr1 84148894 84149173 -113046259 - B4A SINE B4 -3 289 2 2 1227 1238 50 0 0 chr1 84149272 84149413 -113046019 + B1_Mm SINE Alu 1 141 -6 2 1227 567 0 0 0 chr1 84149414 84149477 -113045955 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1227 285 234 123 45 chr1 84149795 84149974 -113045458 + L1MA5 LINE L1 5979 6171 -132 2 1227 185 309 0 29 chr1 84150415 84150485 -113044947 + MIRb SINE MIR 124 191 -77 2 1227 445 165 0 23 chr1 84150990 84151077 -113044355 - Lx5 LINE L1 -795 6255 6171 2 1227 897 209 14 72 chr1 84151080 84151302 -113044130 + Lx5 LINE L1 6822 7030 -20 2 1227 227 31 31 0 chr1 84151309 84151341 -113044091 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 2 1227 614 288 0 20 chr1 84151410 84151559 -113043873 + RSINE1 SINE B4 3 148 -17 2 1227 369 0 0 0 chr1 84151622 84151663 -113043769 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 1227 1012 169 94 0 chr1 84153031 84153232 -113042200 - URR1A DNA MER1_type -6 220 1 2 1227 468 266 9 9 chr1 84153239 84153349 -113042083 - B3A SINE B2 -88 110 1 2 1227 208 292 0 0 chr1 84153495 84153543 -113041889 + polypyrimidine Low_complexity Low_complexity 2 49 0 2 1227 228 35 0 0 chr1 84153578 84153607 -113041825 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1227 220 102 0 39 chr1 84153636 84153687 -113041745 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 2 1227 472 141 0 49 chr1 84153687 84153769 -113041663 - B1_Mur2 SINE Alu 0 149 72 2 1227 27 29 0 0 chr1 84153806 84153840 -113041592 + AT_rich Low_complexity Low_complexity 1 34 0 2 1227 211 246 203 0 chr1 84154502 84154571 -113040861 + L2b LINE L2 3290 3372 -3 2 1227 21 0 0 0 chr1 84154841 84154862 -113040570 + AT_rich Low_complexity Low_complexity 1 21 0 2 1227 495 0 0 0 chr1 84155103 84155158 -113040274 + (GTTTG)n Simple_repeat Simple_repeat 5 59 0 2 1227 656 281 1 20 chr1 84155250 84155406 -113040026 + B3A SINE B2 7 160 -33 2 1227 513 104 0 0 chr1 84155406 84155483 -113039949 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1227 297 347 38 38 chr1 84155483 84155509 -113039923 + B2_Mm1t SINE B2 161 189 -4 2 1227 1500 246 90 42 chr1 84156537 84156806 -113038626 - MTD LTR MaLR -15 404 116 2 1227 1123 91 0 0 chr1 84156806 84156938 -113038494 + B1_Mus1 SINE Alu 2 133 -15 2 1227 243 0 0 0 chr1 84156942 84156969 -113038463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1227 1500 242 93 44 chr1 84156969 84157093 -113038339 - MTD LTR MaLR -304 115 1 2 1227 332 379 82 34 chr1 84157115 84157538 -113037894 + L2a LINE L2 2701 3134 -292 2 1227 755 342 103 11 chr1 84157540 84157909 -113037523 + MER45B DNA Tip100 6 408 -632 2 1227 3932 11 119 14 chr1 84157909 84158355 -113037077 + MT2_Mm LTR ERVL 1 493 0 2 1227 48111 16 8 0 chr1 84158355 84163672 -113031760 + MERVL-int LTR ERVL 1 5360 -125 2 1227 352 157 58 46 chr1 84163672 84163759 -113031673 + ORR1A3-int LTR MaLR 553 640 -1323 2 1227 322 0 0 0 chr1 84163759 84163797 -113031635 + MERVL-int LTR ERVL 5448 5485 0 2 1227 4693 10 0 12 chr1 84163797 84164296 -113031136 + MT2_Mm LTR ERVL 1 493 0 2 1227 233 284 0 29 chr1 84164652 84164721 -113030711 + MER45B DNA Tip100 819 885 -155 2 1227 22 0 0 0 chr1 84165388 84165410 -113030022 + AT_rich Low_complexity Low_complexity 1 22 0 2 1227 269 328 159 8 chr1 84165417 84165543 -113029889 + MER45B DNA Tip100 896 1040 0 2 1227 538 334 84 81 chr1 84166026 84166420 -113029012 + MLT2C1 LTR ERVL 3 397 0 2 1227 21 57 0 0 chr1 84166902 84166937 -113028495 + AT_rich Low_complexity Low_complexity 1 35 0 2 1227 2144 116 98 41 chr1 84167022 84167180 -113028252 + RMER17C LTR ERVK 1 184 -226 2 1227 919 77 23 23 chr1 84167180 84167352 -113028080 + (TTCTC)n Simple_repeat Simple_repeat 5 176 0 2 1227 2144 116 98 41 chr1 84167352 84167581 -113027851 + RMER17C LTR ERVK 185 410 0 2 1227 456 146 0 0 chr1 84167672 84167761 -113027671 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1227 537 257 110 0 chr1 84167771 84167907 -113027525 + B3A SINE B2 34 184 -14 2 1227 280 356 71 20 chr1 84168644 84168842 -113026590 + MLT1K LTR MaLR 388 595 0 2 1227 365 227 11 11 chr1 84168859 84169033 -113026399 + (TA)n Simple_repeat Simple_repeat 2 175 0 2 1227 733 253 94 15 chr1 84169225 84169426 -113026006 + RCHARR1 DNA MER1_type 18 234 -740 2 1227 209 213 0 32 chr1 84171045 84171108 -113024324 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 2 1227 725 249 34 50 chr1 84171141 84171400 -113024032 - Tigger7 DNA MER2_type -8 2483 2234 2 1227 485 335 73 5 chr1 84171383 84171602 -113023830 - Tigger7 DNA MER2_type -2082 409 176 2 1227 770 265 43 96 chr1 84171677 84171723 -113023709 + MTE2b LTR MaLR 1 35 -344 2 1227 999 126 179 31 chr1 84171723 84171919 -113023513 - URR1B DNA MER1_type 0 225 1 2 1227 770 243 224 49 chr1 84171919 84172201 -113023231 + MTE2b LTR MaLR 36 361 -18 2 1227 1871 137 21 60 chr1 84172315 84172649 -113022783 + ORR1A4 LTR MaLR 1 321 -8 2 1227 282 329 108 58 chr1 84172794 84173067 -113022365 + Charlie8 DNA MER1_type 4 273 -2155 2 1227 230 365 0 0 chr1 84173118 84173192 -113022240 + Charlie8 DNA MER1_type 2355 2428 0 2 1227 548 282 154 23 chr1 84173563 84173999 -113021433 + L1MEc LINE L1 117 609 -5791 2 1227 338 207 124 102 chr1 84174103 84174329 -113021103 + L1MEc LINE L1 4307 4537 -1782 2 1227 269 246 0 16 chr1 84174956 84175018 -113020414 + L1MC4a LINE L1 6820 6880 -1162 2 1227 453 281 48 78 chr1 84175018 84175184 -113020248 + RSINE1 SINE B4 4 164 -1 2 1227 567 0 0 0 chr1 84175184 84175247 -113020185 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1227 202 89 21 43 chr1 84175689 84175736 -113019696 + C-rich Low_complexity Low_complexity 2 47 0 2 1227 234 281 16 0 chr1 84176157 84176221 -113019211 + GA-rich Low_complexity Low_complexity 1 65 0 2 1227 328 290 188 8 chr1 84176272 84176634 -113018798 + L1MC4a LINE L1 7162 7588 -454 2 1227 1384 323 76 35 chr1 84176629 84177290 -113018142 + Lx8 LINE L1 6191 6878 -595 2 1227 183 250 45 0 chr1 84177702 84177746 -113017686 - MIR SINE MIR -57 151 106 2 1227 200 35 35 0 chr1 84178050 84178079 -113017353 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1227 261 208 0 0 chr1 84178191 84178268 -113017164 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1227 361 283 17 0 chr1 84178286 84178406 -113017026 + (CA)n Simple_repeat Simple_repeat 1 122 0 2 1227 493 342 78 58 chr1 84180203 84180649 -113014783 - MLT1C LTR MaLR -14 453 1 2 1227 477 0 0 0 chr1 84180842 84180895 -113014537 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 1227 319 337 93 96 chr1 84182322 84182644 -113012788 + MLT1G1 LTR MaLR 248 568 -11 2 1227 181 225 82 59 chr1 84184330 84184415 -113011017 + MIR SINE MIR 86 172 -90 2 1227 968 104 17 11 chr1 84185739 84185914 -113009518 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 2 1227 2083 170 72 8 chr1 84186713 84187104 -113008328 + MTC LTR MaLR 6 421 0 2 1227 267 353 22 15 chr1 84187104 84187239 -113008193 + MER5A DNA MER1_type 47 182 -7 2 1227 1237 285 34 27 chr1 84187900 84188311 -113007121 + L1MC1 LINE L1 5852 6265 -68 2 1227 215 286 0 0 chr1 84188312 84188361 -113007071 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1227 37 39 0 0 chr1 84188425 84188476 -113006956 + AT_rich Low_complexity Low_complexity 1 51 0 2 1227 252 356 139 15 chr1 84188538 84189005 -113006427 + L2 LINE L2 936 1460 -1959 2 1227 586 293 121 11 chr1 84189163 84189343 -113006089 + MLT1C LTR MaLR 228 428 -39 2 1227 803 301 69 59 chr1 84189343 84189755 -113005677 + MLT2B4 LTR ERVL 1 469 -87 2 1227 755 273 0 6 chr1 84190273 84190435 -113004997 + RSINE1 SINE B4 2 162 -3 2 1227 24 53 0 0 chr1 84190435 84190473 -113004959 + AT_rich Low_complexity Low_complexity 1 38 0 2 1227 710 91 8 0 chr1 84190605 84190726 -113004706 + (TC)n Simple_repeat Simple_repeat 2 123 0 2 1227 225 0 0 0 chr1 84190726 84190750 -113004682 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1227 703 241 126 15 chr1 84190753 84190959 -113004473 - B4 SINE B4 -60 232 4 2 1227 206 207 0 17 chr1 84191226 84191285 -113004147 + GA-rich Low_complexity Low_complexity 4 61 0 2 1227 2309 103 0 0 chr1 84192234 84192553 -113002879 - ORR1A2 LTR MaLR -8 319 1 2 1227 2093 139 71 14 chr1 84193136 84193500 -113001932 - ORR1B1 LTR MaLR -1 393 9 2 1227 6885 51 5 2 chr1 84194088 84194930 -113000502 + L1_Mus2 LINE L1 5723 6566 0 2 1227 806 309 9 0 chr1 84196134 84196351 -112999081 - ID_B1 SINE B4 -5 219 1 2 1227 393 404 46 30 chr1 84196436 84196699 -112998733 - MLT1H1 LTR MaLR -288 267 1 2 1227 459 0 0 0 chr1 84196809 84196860 -112998572 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1227 420 171 0 0 chr1 84197353 84197435 -112997997 + GA-rich Low_complexity Low_complexity 3 84 0 2 1227 29 28 0 0 chr1 84198717 84198753 -112996679 + AT_rich Low_complexity Low_complexity 1 36 0 2 1227 23 78 0 0 chr1 84199213 84199264 -112996168 + AT_rich Low_complexity Low_complexity 1 51 0 2 1227 257 0 0 29 chr1 84199706 84199740 -112995692 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1227 1116 66 0 0 chr1 84199740 84199877 -112995555 - B1_Mus2 SINE Alu -9 138 2 2 1227 25 0 0 0 chr1 84199879 84199904 -112995528 + AT_rich Low_complexity Low_complexity 1 25 0 2 1227 183 170 0 0 chr1 84199972 84200019 -112995413 + A-rich Low_complexity Low_complexity 1 47 0 2 1227 235 382 97 7 chr1 84200945 84201214 -112994218 + L2 LINE L2 2579 2871 -548 2 1227 232 194 16 16 chr1 84201377 84201440 -112993992 + (CCCA)n Simple_repeat Simple_repeat 1 63 0 2 1227 469 346 132 16 chr1 84201965 84202223 -112993209 - B4A SINE B4 0 292 5 2 1227 432 0 0 0 chr1 84202280 84202328 -112993104 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1227 2502 129 37 27 chr1 84202409 84202814 -112992618 + RLTR9E LTR ERVK 1 409 0 2 1227 755 318 7 84 chr1 84204329 84204628 -112990804 - B4A SINE B4 -16 276 1 3 1227 830 297 73 30 chr1 84204687 84205114 -112990318 - L1MB3 LINE L1 -1 6182 5738 3 1227 240 139 0 0 chr1 84205094 84205130 -112990302 - L1M4 LINE L1 -735 5443 5408 3 1227 216 0 0 0 chr1 84205370 84205394 -112990038 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1227 579 258 90 32 chr1 84205860 84206050 -112989382 + B3A SINE B2 3 215 -1 3 1227 798 264 79 35 chr1 84207303 84207568 -112987864 - B4 SINE B4 -1 291 4 3 1227 365 323 30 42 chr1 84209245 84209413 -112986019 - MER5A1 DNA MER1_type 0 166 1 3 1227 251 239 11 0 chr1 84209972 84210060 -112985372 + CT-rich Low_complexity Low_complexity 3 91 0 3 1227 343 301 91 95 chr1 84210922 84211175 -112984257 - MER102b DNA MER1_type -86 255 4 3 1227 492 273 41 14 chr1 84211193 84211338 -112984094 + MLT1J1 LTR MaLR 4 152 -292 3 1227 401 351 37 0 chr1 84211335 84211469 -112983963 + ID_B1 SINE B4 84 222 -2 3 1227 312 143 0 0 chr1 84211777 84211833 -112983599 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 3 1227 426 39 0 0 chr1 84211834 84211886 -112983546 + (ATAAG)n Simple_repeat Simple_repeat 3 54 0 3 1227 290 254 0 0 chr1 84213615 84213670 -112981762 - ID4 SINE ID -27 56 2 3 1227 258 243 95 43 chr1 84214527 84214643 -112980789 - MIRb SINE MIR -19 249 128 3 1227 405 0 0 0 chr1 84215636 84215681 -112979751 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1227 381 346 22 22 chr1 84215780 84215916 -112979516 + B4A SINE B4 3 138 -154 3 1227 652 221 45 19 chr1 84215989 84216146 -112979286 - MTE2a LTR MaLR -10 369 209 3 1227 569 247 130 18 chr1 84216274 84216443 -112978989 - MTE2a LTR MaLR -230 189 2 3 1227 613 254 36 7 chr1 84216746 84216885 -112978547 - B1F1 SINE Alu -6 143 1 3 1227 352 333 38 6 chr1 84217929 84218089 -112977343 - B4A SINE B4 -117 175 11 3 1227 359 235 66 38 chr1 84218389 84218401 -112977031 - PB1D10 SINE Alu 0 117 107 3 1227 186 71 0 0 chr1 84218401 84218429 -112977003 + (CATATA)n Simple_repeat Simple_repeat 4 31 0 3 1227 359 235 66 38 chr1 84218429 84218522 -112976910 - PB1D10 SINE Alu -11 106 9 3 1227 271 290 0 106 chr1 84218456 84218560 -112976872 - B4A SINE B4 -134 158 66 3 1227 413 274 152 6 chr1 84219434 84219592 -112975840 + B3A SINE B2 2 182 -16 3 1227 211 247 22 0 chr1 84220117 84220206 -112975226 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 3 1227 614 145 36 6 chr1 84220221 84220388 -112975044 + (TAGA)n Simple_repeat Simple_repeat 4 175 0 3 1227 181 302 73 32 chr1 84220535 84220658 -112974774 - MIRm SINE MIR -125 151 24 3 1227 21 0 0 0 chr1 84221175 84221196 -112974236 + AT_rich Low_complexity Low_complexity 1 21 0 3 1227 339 25 0 0 chr1 84221463 84221503 -112973929 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1227 360 0 0 0 chr1 84221503 84221542 -112973890 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1227 647 229 7 28 chr1 84221572 84221716 -112973716 - B3 SINE B2 -74 142 2 3 1227 444 257 39 88 chr1 84221780 84221985 -112973447 + MER2 DNA MER2_type 129 323 -22 3 1227 1179 241 53 130 chr1 84222604 84223611 -112971821 + RMER17B LTR ERVK 3 926 -32 3 1227 4028 224 54 11 chr1 84223941 84224861 -112970571 + Lx9 LINE L1 6670 7629 -15 3 1227 3012 148 85 8 chr1 84224927 84225444 -112969988 + Lx4A LINE L1 6499 7055 -3 3 1227 311 280 65 41 chr1 84225576 84225699 -112969733 - MER3 DNA MER1_type -25 184 59 3 1227 332 310 122 32 chr1 84225957 84226210 -112969222 + B4A SINE B4 3 278 -14 3 1227 193 0 94 0 chr1 84226723 84226755 -112968677 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1227 696 247 7 0 chr1 84226787 84226933 -112968499 + RSINE1 SINE B4 11 157 -8 3 1227 1414 190 123 16 chr1 84226951 84227313 -112968119 - MTD LTR MaLR -8 411 10 3 1227 231 146 0 0 chr1 84227615 84227656 -112967776 + (TATG)n Simple_repeat Simple_repeat 3 43 0 3 1227 1029 92 0 0 chr1 84227657 84227821 -112967611 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 3 1227 331 275 5 31 chr1 84229384 84229608 -112965824 + GA-rich Low_complexity Low_complexity 1 217 0 3 1227 1338 40 0 0 chr1 84229608 84229781 -112965651 + (GGGA)n Simple_repeat Simple_repeat 3 175 0 3 1227 256 258 0 42 chr1 84229781 84229826 -112965606 + polypurine Low_complexity Low_complexity 117 159 0 3 1227 216 158 0 0 chr1 84229965 84230022 -112965410 + A-rich Low_complexity Low_complexity 1 57 0 3 1227 810 232 72 79 chr1 84230522 84230830 -112964602 + MTEb LTR MaLR 5 333 -46 3 1227 285 279 35 0 chr1 84230959 84231045 -112964387 - B4 SINE B4 -184 108 20 3 1227 1242 193 5 0 chr1 84231935 84232142 -112963290 + B3 SINE B2 3 210 -6 3 1227 263 304 241 0 chr1 84232241 84232432 -112963000 - MLT1A1 LTR MaLR -171 237 1 3 1227 775 230 187 9 chr1 84233224 84233443 -112961989 + RMER1C Other Other 1069 1326 -16 3 1227 444 262 127 7 chr1 84234126 84234276 -112961156 - MLT1E2 LTR MaLR -398 229 62 3 1227 303 193 36 18 chr1 84234608 84234719 -112960713 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 3 1227 331 363 28 16 chr1 84234724 84234906 -112960526 - ORR1E LTR MaLR -175 184 1 3 1227 536 294 38 11 chr1 84235022 84235208 -112960224 + MLT1D LTR MaLR 302 492 -13 3 1227 203 239 0 21 chr1 84235585 84235632 -112959800 + C-rich Low_complexity Low_complexity 5 50 0 3 1227 216 289 19 0 chr1 84236456 84236508 -112958924 - BC1_Mm scRNA scRNA -83 69 17 3 1227 338 286 33 0 chr1 84236524 84236615 -112958817 - B1F SINE Alu -4 145 52 3 1227 213 182 0 0 chr1 84236741 84236796 -112958636 + GA-rich Low_complexity Low_complexity 1 55 0 3 1227 216 250 0 0 chr1 84237058 84237122 -112958310 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1227 800 265 22 48 chr1 84238724 84238954 -112956478 - ID_B1 SINE B4 0 224 1 3 1227 235 336 18 27 chr1 84240212 84240322 -112955110 + MLT1A1 LTR MaLR 300 408 0 3 1227 368 299 22 5 chr1 84240486 84240671 -112954761 - L1MEf LINE L1 -4878 1322 1135 3 1227 788 316 140 3 chr1 84240678 84240999 -112954433 + MTE2a LTR MaLR 1 365 -14 3 1227 472 206 25 13 chr1 84241548 84241705 -112953727 + (CATATA)n Simple_repeat Simple_repeat 1 159 0 3 1227 3246 57 0 5 chr1 84241763 84242168 -112953264 - L1_Mus1 LINE L1 -2 6565 6163 3 1227 805 100 15 0 chr1 84243354 84243484 -112951948 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 3 1227 32 0 0 0 chr1 84243505 84243537 -112951895 + AT_rich Low_complexity Low_complexity 1 32 0 3 1227 213 39 0 0 chr1 84244194 84244220 -112951212 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 3 1227 695 198 92 12 chr1 84245241 84245405 -112950027 + B3A SINE B2 2 178 -20 3 1227 259 214 62 13 chr1 84245430 84245519 -112949913 - Lx4B LINE L1 0 7058 6986 3 1227 257 310 38 15 chr1 84245927 84246058 -112949374 - MIRb SINE MIR -42 226 93 3 1227 242 217 8 0 chr1 84246920 84247040 -112948392 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 1227 533 178 6 0 chr1 84247067 84247224 -112948208 + (CA)n Simple_repeat Simple_repeat 2 159 0 3 1227 1015 249 41 75 chr1 84247830 84248217 -112947215 - Lx8 LINE L1 -1 7472 7099 3 1227 29 0 0 0 chr1 84248480 84248509 -112946923 + AT_rich Low_complexity Low_complexity 1 29 0 3 1227 23 0 0 0 chr1 84248551 84248574 -112946858 + AT_rich Low_complexity Low_complexity 1 23 0 3 1227 271 320 0 26 chr1 84250014 84250091 -112945341 - ID4_ SINE ID -2 81 7 3 1227 183 80 0 0 chr1 84251957 84251982 -112943450 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1227 267 114 0 0 chr1 84252831 84252875 -112942557 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 3 1227 1216 259 47 26 chr1 84253398 84253739 -112941693 + ORR1E LTR MaLR 1 348 -11 3 1227 22 0 0 0 chr1 84254268 84254290 -112941142 + AT_rich Low_complexity Low_complexity 1 22 0 3 1227 396 0 0 0 chr1 84254672 84254716 -112940716 + (TTC)n Simple_repeat Simple_repeat 2 45 0 3 1227 23 33 0 0 chr1 84254831 84254861 -112940571 + AT_rich Low_complexity Low_complexity 1 30 0 3 1227 8009 71 4 5 chr1 84254900 84256434 -112938998 - L1_Mus2 LINE L1 0 6566 5034 3 1227 26 0 0 0 chr1 84256464 84256490 -112938942 + AT_rich Low_complexity Low_complexity 1 26 0 3 1227 234 349 46 26 chr1 84256616 84256769 -112938663 - MER102b DNA MER1_type -152 189 34 3 1227 376 294 29 0 chr1 84257739 84257841 -112937591 + RSINE1 SINE B4 3 107 -58 3 1227 230 139 93 0 chr1 84258681 84258724 -112936708 + ID_B1 SINE B4 94 140 -84 3 1227 249 108 0 0 chr1 84258783 84258820 -112936612 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1227 471 78 0 0 chr1 84258879 84258943 -112936489 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 3 1227 1251 56 0 0 chr1 84258943 84259103 -112936329 + (GAAAA)n Simple_repeat Simple_repeat 5 164 0 3 1227 227 242 164 22 chr1 84259307 84259451 -112935981 - L1MA10 LINE L1 0 6334 6180 3 1227 541 229 49 8 chr1 84259640 84259763 -112935669 - RSINE1 SINE B4 -37 128 1 3 1227 475 248 88 36 chr1 84259776 84260074 -112935358 - L1MA10 LINE L1 -968 5476 5159 3 1227 39375 8 0 1 chr1 84260085 84266295 -112929137 + L1Md_A LINE L1 1 5586 -297 3 1227 9224 2 0 0 chr1 84266295 84267291 -112928141 + L1Md_A LINE L1 5587 6582 0 3 1227 277 221 14 14 chr1 84267454 84267523 -112927909 - ID4_ SINE ID -13 70 2 3 1227 613 280 132 18 chr1 84268114 84268498 -112926934 + MLT1C LTR MaLR 32 459 -8 3 1227 927 265 27 100 chr1 84268802 84269171 -112926261 + MTEa LTR MaLR 24 365 -14 3 1227 556 287 96 114 chr1 84270149 84270220 -112925212 - MLT1C LTR MaLR -35 432 367 3 1227 1330 96 37 0 chr1 84270220 84270408 -112925024 + B2_Mm2 SINE B2 1 195 0 3 1227 556 287 96 114 chr1 84270408 84270776 -112924656 - MLT1C LTR MaLR -101 366 1 3 1227 1043 269 77 34 chr1 84271549 84271899 -112923533 + ORR1D2 LTR MaLR 6 370 0 3 1227 257 20 39 39 chr1 84271903 84271955 -112923477 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 1227 30 0 0 0 chr1 84272003 84272033 -112923399 + AT_rich Low_complexity Low_complexity 1 30 0 4 1227 219 186 0 0 chr1 84272039 84272082 -112923350 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1227 7940 25 1 1 chr1 84272083 84272987 -112922445 - L1Md_F2 LINE L1 -8 6574 5671 4 1227 469 286 17 0 chr1 84274088 84274207 -112921225 + B4 SINE B4 94 214 -78 4 1227 744 151 0 4 chr1 84274207 84274448 -112920984 + CT-rich Low_complexity Low_complexity 1 239 0 4 1227 855 134 0 0 chr1 84274456 84274635 -112920797 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1227 972 111 0 0 chr1 84274664 84274844 -112920588 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1227 329 287 59 0 chr1 84276261 84276362 -112919070 + B1F1 SINE Alu 3 109 -40 4 1227 413 272 101 65 chr1 84276832 84277175 -112918257 + ORR1E LTR MaLR 2 379 0 4 1227 185 0 40 0 chr1 84278107 84278132 -112917300 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1228 279 0 0 0 chr1 84279736 84279767 -112915665 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1228 25 75 0 0 chr1 84281192 84281245 -112914187 + GC_rich Low_complexity Low_complexity 1 53 0 4 1228 522 0 0 0 chr1 84282600 84282658 -112912774 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1228 351 0 0 0 chr1 84282810 84282849 -112912583 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 4 1228 261 172 69 0 chr1 84283957 84284015 -112911417 + L1M5 LINE L1 5721 5782 -382 4 1228 209 321 47 0 chr1 84284212 84284326 -112911106 + MIRb SINE MIR 58 179 -89 4 1228 926 216 5 77 chr1 84284691 84284887 -112910545 + B3A SINE B2 1 182 -16 4 1228 235 340 92 46 chr1 84285482 84285763 -112909669 + MLT1H2 LTR MaLR 192 485 -4 4 1228 1220 68 0 0 chr1 84286578 84286725 -112908707 + B1_Mus2 SINE Alu 1 147 0 4 1228 261 0 0 0 chr1 84286725 84286754 -112908678 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1228 7972 54 1 6 chr1 84287113 84288587 -112906845 - L1Md_F2 LINE L1 -12 6570 5108 4 1228 587 48 119 0 chr1 84288586 84288670 -112906762 + L1_Mm LINE L1 1289 1382 -4501 4 1228 972 18 0 0 chr1 84289018 84289132 -112906300 + (TC)n Simple_repeat Simple_repeat 1 114 0 4 1228 243 0 0 0 chr1 84289132 84289158 -112906274 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1228 379 179 15 15 chr1 84289472 84289540 -112905892 + ID4 SINE ID 4 71 -12 4 1228 645 288 99 70 chr1 84289559 84289843 -112905589 + B4A SINE B4 1 292 0 4 1228 439 192 16 28 chr1 84289843 84290025 -112905407 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1228 439 236 142 31 chr1 84290291 84290418 -112905014 + B1F1 SINE Alu 1 141 -8 4 1228 1740 77 14 0 chr1 84290672 84290894 -112904538 - L1Md_F2 LINE L1 -1 6581 6357 4 1228 321 293 33 13 chr1 84291110 84291262 -112904170 + L1ME1 LINE L1 2777 2931 -3215 4 1228 1360 262 45 24 chr1 84291405 84291827 -112903605 + L1ME1 LINE L1 5519 5949 -230 4 1228 323 169 14 0 chr1 84291988 84292059 -112903373 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1228 331 337 84 6 chr1 84292062 84292229 -112903203 - B3A SINE B2 -17 181 2 4 1228 1274 226 49 15 chr1 84292633 84292957 -112902475 + Lx6 LINE L1 7126 7460 0 4 1228 597 290 32 0 chr1 84292969 84293124 -112902308 + RSINE1 SINE B4 1 160 -5 4 1228 3666 28 2 0 chr1 84293860 84294255 -112901177 - MTA_Mm LTR MaLR 0 396 1 4 1228 5845 58 3 13 chr1 84294533 84295244 -112900188 + L1_Mus3 LINE L1 5934 6637 -1 4 1228 195 42 0 0 chr1 84295363 84295387 -112900045 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1228 427 323 8 38 chr1 84295468 84295600 -112899832 + B1_Mur1 SINE Alu 2 129 -20 4 1228 648 70 0 0 chr1 84295616 84295702 -112899730 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1228 332 225 22 28 chr1 84295720 84295898 -112899534 + GA-rich Low_complexity Low_complexity 2 178 0 4 1228 320 259 35 0 chr1 84295960 84296045 -112899387 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1228 260 350 21 7 chr1 84296955 84297096 -112898336 + MIR3 SINE MIR 61 203 -5 4 1228 632 94 51 34 chr1 84297377 84297554 -112897878 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1228 1130 31 19 6 chr1 84297637 84297797 -112897635 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 4 1228 231 125 0 0 chr1 84298854 84298894 -112896538 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1228 1146 257 45 38 chr1 84298911 84299198 -112896234 - B4A SINE B4 -3 289 1 4 1228 204 143 29 0 chr1 84300179 84300214 -112895218 + (CATA)n Simple_repeat Simple_repeat 1 36 0 4 1228 258 184 125 65 chr1 84300917 84301072 -112894360 - Lx8 LINE L1 -41 7603 7350 4 1228 834 56 0 0 chr1 84301205 84301313 -112894119 + (CTACT)n Simple_repeat Simple_repeat 5 112 0 4 1228 195 69 0 0 chr1 84302285 84302314 -112893118 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1228 290 330 55 40 chr1 84303729 84303928 -112891504 - Charlie19a DNA Charlie -77 309 108 4 1228 189 0 0 0 chr1 84303936 84303957 -112891475 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 1228 2308 166 11 46 chr1 84304852 84305063 -112890369 + MTC LTR MaLR 1 210 -211 4 1228 4517 49 0 4 chr1 84305063 84305577 -112889855 + L1Md_F2 LINE L1 6058 6569 -13 4 1228 648 0 0 0 chr1 84305584 84305656 -112889776 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 4 1228 2308 166 11 46 chr1 84305656 84305872 -112889560 + MTC LTR MaLR 211 421 0 4 1228 483 116 33 65 chr1 84305989 84306016 -112889416 + polypyrimidine Low_complexity Low_complexity 154 180 0 4 1228 1451 0 0 22 chr1 84306016 84306199 -112889233 + (TTC)n Simple_repeat Simple_repeat 2 180 0 4 1228 483 116 33 65 chr1 84306199 84306355 -112889077 + CT-rich Low_complexity Low_complexity 3 153 0 4 1228 373 333 45 34 chr1 84306355 84306532 -112888900 - MTEa LTR MaLR -200 179 1 4 1228 307 326 173 7 chr1 84308400 84308539 -112886893 - MLT1B LTR MaLR -7 383 222 4 1228 1347 27 0 0 chr1 84308727 84308873 -112886559 + B1_Mm SINE Alu 2 147 0 4 1228 224 30 30 0 chr1 84308883 84308916 -112886516 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1228 789 290 111 26 chr1 84309231 84309653 -112885779 - L1MA9 LINE L1 -248 6064 5607 4 1228 769 310 0 5 chr1 84309686 84309874 -112885558 - B3A SINE B2 -9 189 3 4 1228 1198 302 108 46 chr1 84309959 84310479 -112884953 + L1M3 LINE L1 3457 4019 -2121 4 1228 225 211 37 123 chr1 84310479 84310560 -112884872 + ID4 SINE ID 3 76 -7 4 1228 1198 302 108 46 chr1 84310560 84310774 -112884658 + L1M3 LINE L1 4020 4236 -1904 4 1228 269 326 0 10 chr1 84310926 84311022 -112884410 - MLT1C LTR MaLR -2 465 371 4 1228 319 305 8 153 chr1 84312221 84312345 -112883087 + B4A SINE B4 22 127 -165 4 1228 333 0 0 0 chr1 84312428 84312465 -112882967 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1228 1296 207 185 68 chr1 84312475 84312978 -112882454 - RMER4B LTR ERVK -9 576 15 4 1228 1420 292 31 11 chr1 84313328 84313688 -112881744 + MTE2b LTR MaLR 8 374 -5 4 1228 337 210 22 75 chr1 84315471 84315605 -112879827 + Lx6 LINE L1 7308 7434 -26 4 1228 941 255 42 108 chr1 84316323 84316684 -112878748 + MTE2a LTR MaLR 1 337 -42 4 1228 1090 339 101 37 chr1 84317625 84318320 -112877112 - L3 LINE CR1 -739 3750 3012 4 1228 570 15 0 0 chr1 84318691 84318758 -112876674 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1228 596 133 66 3 chr1 84318758 84318870 -112876562 - B1_Mus2 SINE Alu -11 138 20 4 1228 295 235 11 76 chr1 84318792 84318884 -112876548 - MT2B LTR ERVL -344 257 172 4 1228 314 272 32 32 chr1 84319243 84319338 -112876094 + Lx7 LINE L1 7207 7301 -395 4 1228 246 283 109 50 chr1 84319417 84319536 -112875896 + RMER1C Other Other 1204 1329 -13 4 1228 348 119 0 0 chr1 84319617 84319676 -112875756 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1228 207 152 0 0 chr1 84320183 84320229 -112875203 + T-rich Low_complexity Low_complexity 1 46 0 4 1228 200 118 0 29 chr1 84320266 84320301 -112875131 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 4 1228 329 349 87 15 chr1 84320904 84321099 -112874333 - Lx8 LINE L1 -196 7277 7069 4 1228 465 167 0 0 chr1 84321099 84321225 -112874207 + (TG)n Simple_repeat Simple_repeat 1 126 0 4 1228 207 0 0 0 chr1 84321962 84321985 -112873447 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1228 736 281 9 50 chr1 84322875 84323096 -112872336 - B3 SINE B2 -2 214 3 4 1228 378 141 16 0 chr1 84323904 84323968 -112871464 + Lx6 LINE L1 5828 5892 -1568 4 1228 5913 206 77 4 chr1 84323984 84325190 -112870242 + Lx6 LINE L1 5982 7275 -185 4 1228 1840 243 34 0 chr1 84326273 84326631 -112868801 - ORR1D2 LTR MaLR 0 370 1 4 1228 239 324 138 35 chr1 84326688 84326970 -112868462 + L1MEg LINE L1 60 370 -6030 4 1228 400 260 151 31 chr1 84327252 84327411 -112868021 - B3 SINE B2 0 216 39 4 1228 709 256 0 0 chr1 84327450 84327579 -112867853 - B1_Mur4 SINE Alu -17 133 5 4 1228 446 330 27 0 chr1 84327605 84327717 -112867715 + PB1 SINE Alu 1 115 -12 4 1228 351 0 0 0 chr1 84328241 84328280 -112867152 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1228 198 180 0 0 chr1 84328315 84328376 -112867056 + T-rich Low_complexity Low_complexity 1 61 0 4 1228 1276 48 0 0 chr1 84328387 84328534 -112866898 - B1_Mm SINE Alu 0 147 1 4 1228 2765 160 28 44 chr1 84328598 84328724 -112866708 + RLTR13D1 LTR ERVK 1 124 -778 4 1228 4457 59 40 9 chr1 84328724 84329267 -112866165 - LTRIS2 LTR ERV1 0 564 5 4 1228 2765 160 28 44 chr1 84329267 84329682 -112865750 + RLTR13D1 LTR ERVK 125 533 -369 4 1228 3802 92 17 24 chr1 84329664 84330244 -112865188 + RLTR13D1 LTR ERVK 228 803 -3 4 1228 470 262 149 60 chr1 84330331 84330680 -112864752 - L1M5 LINE L1 -509 5655 5276 4 1228 464 329 155 0 chr1 84330745 84330952 -112864480 - MER21B LTR ERV1 -351 512 274 4 1228 774 282 97 78 chr1 84331010 84331421 -112864011 - MTD LTR MaLR 0 419 1 4 1228 284 299 13 0 chr1 84331606 84331683 -112863749 + GA-rich Low_complexity Low_complexity 2 79 0 4 1228 339 278 140 45 chr1 84331883 84332460 -112862972 + L1MEg LINE L1 1143 1774 -4641 4 1228 3298 78 0 0 chr1 84332527 84332927 -112862505 - MTB LTR MaLR 0 400 1 5 1228 7760 76 9 70 chr1 84332927 84334093 -112861339 - MTB-int LTR MaLR 0 1098 3 5 1228 2901 58 42 8 chr1 84334095 84334478 -112860954 - MTB LTR MaLR 0 396 1 5 1228 662 329 90 9 chr1 84335118 84335452 -112859980 + MLT1A0 LTR MaLR 4 364 -1 5 1228 271 316 48 50 chr1 84335597 84336007 -112859425 + L1MEg LINE L1 2630 3042 -3277 4 1228 333 382 51 0 chr1 84336309 84336466 -112858966 - MER5A DNA MER1_type -21 168 4 5 1228 363 358 31 31 chr1 84336562 84336755 -112858677 + ORR1E LTR MaLR 3 195 -164 5 1228 464 221 0 0 chr1 84336989 84337075 -112858357 + B3A SINE B2 9 94 -104 5 1228 31904 109 16 29 chr1 84337131 84343525 -112851907 + L1_Mus1 LINE L1 261 6567 0 5 1228 560 315 126 34 chr1 84343576 84344454 -112850978 + L1M5 LINE L1 3743 4701 -1445 5 1228 693 203 0 53 chr1 84344522 84344673 -112850759 + B3A SINE B2 1 143 -55 5 1228 277 321 85 97 chr1 84344681 84344857 -112850575 + B4A SINE B4 3 176 -116 5 1228 186 150 0 0 chr1 84344920 84344960 -112850472 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1228 753 43 0 0 chr1 84345065 84345158 -112850274 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1228 317 265 33 33 chr1 84345448 84345569 -112849863 + L1M5 LINE L1 5255 5375 -1069 5 1228 8062 59 4 1 chr1 84347523 84348951 -112846481 - L1Md_F2 LINE L1 0 6582 5154 5 1228 184 336 65 9 chr1 84349931 84350039 -112845393 - L2c LINE L2 -20 3367 3254 5 1228 980 215 24 19 chr1 84350081 84350294 -112845138 + B3 SINE B2 2 215 -1 5 1228 408 40 0 0 chr1 84350320 84350370 -112845062 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 5 1228 587 206 178 11 chr1 84350372 84350563 -112844869 + MTD LTR MaLR 196 418 -1 5 1228 414 202 104 37 chr1 84352103 84352267 -112843165 + MER53 DNA hAT 9 183 -10 5 1228 735 283 70 52 chr1 84352512 84352881 -112842551 + MTEa LTR MaLR 1 376 -3 5 1228 507 289 13 7 chr1 84352883 84353033 -112842399 + MTEa-int LTR MaLR 1 151 -1429 5 1228 477 301 133 19 chr1 84353064 84353328 -112842104 + MTEa-int LTR MaLR 323 616 -964 5 1228 1250 315 38 68 chr1 84353442 84353814 -112841618 + MTEa-int LTR MaLR 1041 1392 -188 5 1228 1865 216 8 182 chr1 84353814 84354198 -112841234 + RMER19C LTR ERVK 1 289 -322 5 1228 231 36 0 0 chr1 84354198 84354226 -112841206 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1228 1865 216 8 182 chr1 84354226 84354581 -112840851 + RMER19C LTR ERVK 290 611 0 5 1228 1250 315 38 68 chr1 84354581 84354764 -112840668 + MTEa-int LTR MaLR 1393 1578 -2 5 1228 825 282 128 22 chr1 84354775 84355094 -112840338 + MTEa LTR MaLR 1 353 -26 5 1228 735 212 109 27 chr1 84355121 84355305 -112840127 + B3 SINE B2 16 214 -2 5 1228 21 0 0 0 chr1 84355305 84355326 -112840106 + AT_rich Low_complexity Low_complexity 1 21 0 5 1228 2883 16 0 0 chr1 84355689 84356011 -112839421 + RLTRETN_Mm LTR ERVK 1 322 0 5 1228 1065 236 0 9 chr1 84358487 84358701 -112836731 - B3 SINE B2 -3 213 2 5 1228 180 250 0 0 chr1 84360440 84360480 -112834952 + MIRm SINE MIR 233 272 -4 5 1228 926 245 40 149 chr1 84360525 84360947 -112834485 - MTE2a LTR MaLR -3 376 1 5 1228 402 286 87 19 chr1 84361035 84361209 -112834223 + MIRb SINE MIR 44 221 -47 5 1228 400 264 148 22 chr1 84361546 84361728 -112833704 + MER20 DNA MER1_type 1 205 -14 5 1228 333 0 0 0 chr1 84361737 84361774 -112833658 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1228 422 18 18 0 chr1 84361774 84361828 -112833604 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1228 859 148 3 16 chr1 84362435 84362797 -112832635 + (TG)n Simple_repeat Simple_repeat 1 357 0 5 1228 293 300 136 70 chr1 84362797 84363069 -112832363 - B4 SINE B4 0 292 3 5 1228 228 311 43 43 chr1 84363608 84363702 -112831730 - L1M5 LINE L1 -720 5724 5631 5 1228 778 290 41 48 chr1 84364682 84364975 -112830457 + B4A SINE B4 2 292 0 5 1228 669 121 0 24 chr1 84365018 84365145 -112830287 + (GGA)n Simple_repeat Simple_repeat 3 126 0 5 1228 459 321 39 97 chr1 84367537 84367783 -112827649 + B4A SINE B4 28 269 -23 5 1228 507 33 0 0 chr1 84367783 84367844 -112827588 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1228 459 321 39 97 chr1 84367844 84367876 -112827556 + B4A SINE B4 270 290 -2 5 1228 527 287 23 6 chr1 84367902 84368077 -112827355 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1228 227 21 40 60 chr1 84368869 84368919 -112826513 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 5 1228 449 40 53 0 chr1 84369032 84369108 -112826324 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 1228 651 248 0 21 chr1 84369214 84369354 -112826078 - B1F SINE Alu -9 140 4 5 1228 38769 41 5 3 chr1 84369973 84376250 -112819182 - L1Md_T LINE L1 0 6585 196 5 1228 630 232 37 53 chr1 84376974 84377161 -112818271 + RMER30 DNA MER1_type 11 194 -8 5 1228 416 264 101 54 chr1 84379094 84379242 -112816190 + B3A SINE B2 22 176 -22 5 1228 943 240 36 91 chr1 84379722 84379998 -112815434 + B4 SINE B4 3 270 -22 5 1228 180 0 0 0 chr1 84379998 84380018 -112815414 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1228 943 240 36 91 chr1 84380018 84380048 -112815384 + B4 SINE B4 271 292 0 5 1228 252 244 105 0 chr1 84380774 84380860 -112814572 + ORR1E LTR MaLR 1 95 -264 5 1228 1093 119 32 21 chr1 84380860 84381049 -112814383 + L1Md_F2 LINE L1 6380 6570 -12 5 1228 278 54 0 0 chr1 84381061 84381098 -112814334 - RLTR11A LTR ERVK -396 132 96 5 1228 479 238 197 40 chr1 84381107 84381330 -112814102 + ORR1E LTR MaLR 98 355 -4 5 1228 324 0 0 0 chr1 84383381 84383417 -112812015 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1228 415 298 59 30 chr1 84383703 84383838 -112811594 - RSINE1 SINE B4 -16 149 11 5 1228 7197 51 17 0 chr1 84385000 84385866 -112809566 - L1_Mus1 LINE L1 -1 6566 5686 5 1228 1580 171 69 12 chr1 84385894 84386214 -112809218 + ORR1C1 LTR MaLR 41 378 0 5 1228 977 123 0 6 chr1 84386722 84386886 -112808546 + URR1A DNA MER1_type 64 226 0 5 1228 2106 164 59 5 chr1 84388152 84388544 -112806888 + MTC LTR MaLR 1 413 -8 5 1228 762 264 16 16 chr1 84388546 84388738 -112806694 - B3 SINE B2 -14 202 11 5 1228 207 0 0 0 chr1 84388738 84388761 -112806671 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 5 1228 280 292 28 0 chr1 84390092 84390198 -112805234 + L1_Rod LINE L1 1554 1662 -4185 5 1228 799 301 3 80 chr1 84391091 84391161 -112804271 - B4 SINE B4 -24 268 217 5 1228 282 29 0 0 chr1 84391161 84391196 -112804236 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1228 815 324 0 9 chr1 84391196 84391414 -112804018 - B4A SINE B4 -75 217 2 5 1228 1105 77 0 20 chr1 84391442 84391588 -112803844 - B1_Mus2 SINE Alu 0 147 5 5 1228 1286 77 0 5 chr1 84394467 84394677 -112800755 + (GAAA)n Simple_repeat Simple_repeat 1 209 0 5 1228 211 191 32 0 chr1 84394817 84394880 -112800552 + CT-rich Low_complexity Low_complexity 2 66 0 5 1228 656 280 120 65 chr1 84394899 84394978 -112800454 - B4A SINE B4 0 292 227 5 1228 612 246 126 22 chr1 84394978 84395161 -112800271 - B3 SINE B2 -14 202 1 5 1228 656 280 120 65 chr1 84395161 84395356 -112800076 - B4A SINE B4 -66 226 3 5 1228 719 234 41 60 chr1 84396315 84396533 -112798899 + L1MD LINE L1 4700 4913 -1233 5 1228 619 182 52 60 chr1 84396703 84396837 -112798595 - ID_B1 SINE B4 -10 214 82 5 1228 2340 281 54 46 chr1 84396861 84397837 -112797595 + L1MC3 LINE L1 6331 7314 -471 5 1228 405 250 56 12 chr1 84397844 84398006 -112797426 + L1MD LINE L1 5295 5463 -779 5 1228 565 257 28 21 chr1 84398311 84398454 -112796978 + B3 SINE B2 45 188 -28 5 1228 186 43 0 0 chr1 84398647 84398670 -112796762 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1228 241 222 0 31 chr1 84399017 84399082 -112796350 + L1_Rod LINE L1 5277 5339 -508 5 1228 758 227 10 67 chr1 84399504 84399712 -112795720 + B3A SINE B2 1 196 -2 5 1228 924 265 48 15 chr1 84400595 84400863 -112794569 - B4 SINE B4 -14 278 2 5 1228 3048 178 68 50 chr1 84401057 84401886 -112793546 + RMER13B LTR ERVK 1 844 -64 5 1228 507 212 14 7 chr1 84402738 84402885 -112792547 + (TG)n Simple_repeat Simple_repeat 2 149 0 5 1228 295 292 21 0 chr1 84402892 84402988 -112792444 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 5 1228 404 295 7 77 chr1 84404051 84404194 -112791238 + ID_B1 SINE B4 53 185 -39 5 1228 345 47 0 0 chr1 84404201 84404244 -112791188 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1228 375 241 81 0 chr1 84404245 84404332 -112791100 + Lx9 LINE L1 7362 7455 -189 5 1228 609 14 0 0 chr1 84404332 84404402 -112791030 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 5 1228 542 135 9 28 chr1 84404402 84404509 -112790923 + Lx9 LINE L1 7540 7644 0 5 1228 225 111 55 18 chr1 84404763 84404818 -112790614 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 5 1228 2083 178 74 12 chr1 84404831 84405252 -112790180 - RMER1B Other Other -1 1065 619 5 1228 402 264 28 9 chr1 84405257 84405364 -112790068 - PB1D10 SINE Alu 0 117 9 5 1228 525 242 38 8 chr1 84405277 84405410 -112790022 - ID_B1 SINE B4 -48 176 40 5 1228 856 143 0 13 chr1 84408451 84408607 -112786825 - URR1A DNA MER1_type 0 226 73 5 1228 477 320 102 0 chr1 84408631 84408778 -112786654 + MTEb LTR MaLR 53 214 -165 5 1228 519 60 0 0 chr1 84408798 84408865 -112786567 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1228 524 281 7 28 chr1 84408890 84409033 -112786399 - RSINE1 SINE B4 -23 142 3 5 1228 1590 254 99 22 chr1 84409059 84409514 -112785918 + Lx6 LINE L1 6945 7434 -26 5 1228 504 260 54 14 chr1 84409571 84409719 -112785713 + MTEb LTR MaLR 201 354 -25 5 1228 1208 316 8 13 chr1 84409862 84410244 -112785188 + MTE-int LTR MaLR 53 432 -1148 5 153 913 286 154 18 chr1 84410243 84410581 -112784851 + MTE-int LTR MaLR 635 1018 -562 5 1229 645 320 106 34 chr1 84411467 84411732 -112783700 - B4 SINE B4 -2 290 7 5 1229 243 264 21 65 chr1 84414624 84414717 -112780715 + MIR SINE MIR 140 235 -33 5 1229 230 280 244 8 chr1 84416639 84416758 -112778674 + MER20 DNA MER1_type 8 154 -65 5 1229 282 339 83 17 chr1 84416782 84416902 -112778530 + MER58A DNA MER1_type 8 135 -89 5 1229 510 216 60 20 chr1 84416965 84417116 -112778316 - L1M3 LINE L1 -1027 5113 4957 5 1229 346 216 29 62 chr1 84417126 84417278 -112778154 + L1MB1 LINE L1 5384 5524 -659 5 1229 1176 254 39 84 chr1 84417280 84417663 -112777769 - MTE2a LTR MaLR 0 379 14 5 1229 1768 270 72 26 chr1 84417663 84418276 -112777156 + L1MB1 LINE L1 5525 6165 -3 5 1229 1204 203 22 111 chr1 84418298 84418534 -112776898 + B4 SINE B4 1 209 -83 5 1229 2352 138 98 8 chr1 84418534 84418920 -112776512 + MTC LTR MaLR 1 421 0 5 1229 1204 203 22 111 chr1 84418920 84418999 -112776433 + B4 SINE B4 210 288 -4 5 1229 348 234 39 0 chr1 84419085 84419162 -112776270 + ID SINE ID 4 83 -141 5 1229 440 260 19 45 chr1 84419755 84419912 -112775520 + B4A SINE B4 1 153 -139 6 1229 590 254 47 73 chr1 84420023 84420214 -112775218 - B4A SINE B4 -105 187 2 6 1229 1614 207 47 22 chr1 84420571 84420936 -112774496 + ORR1D1 LTR MaLR 1 374 0 6 1229 477 0 0 0 chr1 84420940 84420993 -112774439 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1229 488 251 118 59 chr1 84421025 84421211 -112774221 + ID_B1 SINE B4 11 207 -17 6 1229 471 192 10 0 chr1 84421452 84421551 -112773881 - MLT1B LTR MaLR -8 382 283 6 1229 411 73 0 0 chr1 84421691 84421746 -112773686 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1229 492 241 255 46 chr1 84421786 84422025 -112773407 - B4 SINE B4 0 292 4 6 1229 306 258 124 0 chr1 84422029 84422118 -112773314 - MLT1B LTR MaLR -281 109 10 6 1229 536 353 21 0 chr1 84422167 84422354 -112773078 + MER44D DNA MER2_type 7 197 -508 6 1229 773 260 50 25 chr1 84422446 84422687 -112772745 + MER2 DNA MER2_type 96 342 -3 6 1229 1930 146 96 8 chr1 84423455 84423639 -112771793 - ORR1C2 LTR MaLR 0 384 182 6 1229 273 29 0 0 chr1 84423639 84423673 -112771759 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1229 1930 146 96 8 chr1 84423673 84423841 -112771591 - ORR1C2 LTR MaLR -203 181 2 6 1229 264 390 47 26 chr1 84423925 84424117 -112771315 + MT2A LTR ERVL 267 462 -71 6 1229 351 96 0 0 chr1 84424124 84424176 -112771256 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1229 2709 136 67 9 chr1 84426489 84426955 -112768477 - Lx5 LINE L1 -871 5006 4514 6 1229 7281 171 51 8 chr1 84426956 84428892 -112766540 + Lx5 LINE L1 5025 7049 -1 6 1229 22 35 0 0 chr1 84428892 84428921 -112766511 + AT_rich Low_complexity Low_complexity 1 29 0 6 1229 39 38 0 0 chr1 84429261 84429314 -112766118 + AT_rich Low_complexity Low_complexity 1 53 0 6 1229 813 128 0 0 chr1 84430963 84431111 -112764321 + (TG)n Simple_repeat Simple_repeat 2 149 0 6 1229 629 288 62 111 chr1 84431681 84431852 -112763580 + MTE2a LTR MaLR 2 144 -275 6 1229 1163 93 0 6 chr1 84431852 84432024 -112763408 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 6 1229 739 233 73 82 chr1 84432024 84432277 -112763155 + MTE2a LTR MaLR 123 402 -17 6 1229 189 0 0 0 chr1 84432624 84432645 -112762787 + (TGG)n Simple_repeat Simple_repeat 2 22 0 6 1229 1148 111 0 6 chr1 84432645 84432825 -112762607 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1229 234 128 0 0 chr1 84432825 84432864 -112762568 + (TCC)n Simple_repeat Simple_repeat 2 40 0 6 1229 261 83 0 0 chr1 84432935 84432971 -112762461 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1229 314 296 112 103 chr1 84433848 84434168 -112761264 + MLT1H LTR MaLR 227 549 0 6 1229 492 18 0 0 chr1 84434407 84434464 -112760968 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1229 1043 223 24 5 chr1 84434492 84434704 -112760728 + B3 SINE B2 1 216 0 6 1229 889 209 21 36 chr1 84434781 84434975 -112760457 + B3 SINE B2 18 208 -8 6 1229 353 71 36 0 chr1 84435138 84435194 -112760238 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 6 1229 1212 106 0 0 chr1 84435194 84435373 -112760059 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 6 1229 277 216 65 54 chr1 84436688 84436781 -112758651 - PB1D10 SINE Alu 0 117 24 6 1229 262 265 48 12 chr1 84436900 84436984 -112758448 - MER90a LTR ERV1 -526 88 2 6 1229 198 0 0 0 chr1 84437174 84437196 -112758236 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1229 237 118 0 73 chr1 84439184 84439239 -112756193 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 6 1229 616 102 409 0 chr1 84439271 84439398 -112756034 + B2_Mm1t SINE B2 1 179 -14 6 1229 255 167 18 36 chr1 84439445 84439501 -112755931 + B2_Mm2 SINE B2 47 101 -94 6 1229 39 38 0 0 chr1 84439511 84439564 -112755868 + AT_rich Low_complexity Low_complexity 1 53 0 6 1229 758 282 68 18 chr1 84440056 84440425 -112755007 + MLT2C1 LTR ERVL 1 407 -7 6 1229 436 18 0 0 chr1 84441766 84441822 -112753610 + L1Md_F3 LINE L1 6515 6570 -14 6 1229 812 252 32 9 chr1 84442258 84442474 -112752958 + ID_B1 SINE B4 2 222 -2 6 1229 264 219 36 12 chr1 84442621 84442704 -112752728 + (TATG)n Simple_repeat Simple_repeat 3 87 0 6 1229 22 0 0 0 chr1 84442771 84442793 -112752639 + AT_rich Low_complexity Low_complexity 1 22 0 6 1229 4980 47 2 2 chr1 84442886 84443488 -112751944 - L1Md_F2 LINE L1 -1 6581 5980 6 1229 442 324 91 37 chr1 84443584 84443937 -112751495 + L1MB7 LINE L1 5784 6157 -27 6 1229 28 48 0 0 chr1 84444167 84444209 -112751223 + AT_rich Low_complexity Low_complexity 1 42 0 6 1229 995 279 42 40 chr1 84444919 84445348 -112750084 + Lx7 LINE L1 7036 7471 -2 6 1229 1072 290 103 14 chr1 84445343 84445847 -112749585 + L1M2 LINE L1 4448 4996 -1147 6 1229 229 286 33 0 chr1 84446415 84446487 -112748945 + MIR SINE MIR 78 148 -60 6 1229 261 83 0 0 chr1 84447048 84447084 -112748348 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1229 1152 69 0 20 chr1 84447084 84447232 -112748200 - B1_Mm SINE Alu 0 147 3 6 1229 305 209 99 9 chr1 84447511 84447622 -112747810 + L1MEg LINE L1 1265 1385 -4857 6 1229 253 238 72 33 chr1 84447644 84447826 -112747606 + L1MEg LINE L1 2147 2337 -3809 6 1229 22 80 0 0 chr1 84447867 84447917 -112747515 + AT_rich Low_complexity Low_complexity 1 50 0 6 1229 39361 6 0 0 chr1 84448255 84453781 -112741651 + L1Md_A LINE L1 61 5586 -297 6 1229 9537 6 0 0 chr1 84453781 84454777 -112740655 + L1Md_A LINE L1 5587 6582 0 6 1229 495 295 100 58 chr1 84454777 84455179 -112740253 + L1MEg LINE L1 3976 4393 -1753 6 1229 881 245 70 0 chr1 84455179 84455379 -112740053 + B3 SINE B2 3 216 0 6 1229 495 295 100 58 chr1 84455379 84455545 -112739887 + L1MEg LINE L1 4394 4568 -1578 6 1229 388 235 141 82 chr1 84455579 84455719 -112739713 - MTEa LTR MaLR -130 249 102 6 1229 25 0 0 0 chr1 84455763 84455788 -112739644 + AT_rich Low_complexity Low_complexity 1 25 0 6 1229 1905 302 14 16 chr1 84455875 84456437 -112738995 - Lx8 LINE L1 -542 6931 6371 6 1229 654 310 98 18 chr1 84456444 84456720 -112738712 + Lx8 LINE L1 6948 7245 -228 6 1229 268 137 219 0 chr1 84456826 84456899 -112738533 + Lx8 LINE L1 7383 7471 -2 6 1229 1029 138 0 30 chr1 84457384 84457549 -112737883 + B2_Mm2 SINE B2 5 164 -31 6 1229 896 91 0 8 chr1 84457557 84457690 -112737742 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 6 1229 7765 96 16 5 chr1 84458118 84459386 -112736046 + L1_Mus3 LINE L1 5090 6366 -272 6 1229 270 0 0 0 chr1 84459386 84459416 -112736016 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 6 1229 7765 77 18 8 chr1 84459416 84459676 -112735756 + L1_Mus3 LINE L1 6367 6636 -2 6 1229 627 300 110 5 chr1 84459684 84460083 -112735349 - L1_Rod LINE L1 -3140 2707 2267 6 1229 331 103 82 0 chr1 84460456 84460553 -112734879 + CT-rich Low_complexity Low_complexity 2 106 0 6 1229 1041 274 24 44 chr1 84460589 84460887 -112734545 - B4A SINE B4 0 292 1 6 1229 218 348 72 42 chr1 84460983 84461173 -112734259 + L2b LINE L2 3232 3426 0 6 1229 292 260 100 40 chr1 84461840 84461940 -112733492 + PB1 SINE Alu 3 108 -19 6 1229 570 29 0 0 chr1 84461947 84462015 -112733417 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 6 1229 273 119 0 0 chr1 84462016 84462058 -112733374 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 6 1229 230 268 12 12 chr1 84462952 84463035 -112732397 + L1MEf LINE L1 70 152 -6048 6 1229 1008 274 180 79 chr1 84463659 84464015 -112731417 + MTE2a LTR MaLR 28 419 0 6 1229 423 337 71 16 chr1 84464167 84464351 -112731081 - MIR SINE MIR -25 237 44 6 1229 1400 186 98 0 chr1 84464549 84464856 -112730576 - Lx9 LINE L1 -6 7638 7302 6 1229 754 275 50 43 chr1 84465022 84465299 -112730133 - B4A SINE B4 -13 279 1 6 1229 186 43 0 0 chr1 84465351 84465374 -112730058 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 6 1229 339 181 38 213 chr1 84466417 84466656 -112728776 + RMER17C LTR ERVK 79 275 -135 6 1229 866 241 6 0 chr1 84466992 84467162 -112728270 + B3A SINE B2 1 171 -27 6 1229 220 125 25 0 chr1 84467560 84467600 -112727832 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 6 1229 672 312 95 59 chr1 84467736 84468124 -112727308 + Lx8 LINE L1 7072 7473 0 6 1229 760 256 70 5 chr1 84468148 84468348 -112727084 + ID_B1 SINE B4 4 216 -8 6 1229 199 291 169 47 chr1 84468398 84468546 -112726886 + MIR SINE MIR 60 225 -37 6 1229 386 234 18 27 chr1 84468734 84468844 -112726588 + RLTR15 LTR ERVK 1 109 -250 6 1229 268 254 107 25 chr1 84468888 84469009 -112726423 + RLTR15 LTR ERVK 212 342 -17 6 1229 495 276 21 16 chr1 84469190 84469371 -112726061 + L1MA4A LINE L1 5808 5985 -171 6 1229 270 0 0 0 chr1 84469513 84469543 -112725889 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1229 360 0 0 0 chr1 84469543 84469582 -112725850 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1229 243 271 82 21 chr1 84470389 84470517 -112724915 - MIR SINE MIR -92 176 35 6 1229 869 227 96 101 chr1 84471269 84471741 -112723691 + RMER4A LTR ERVK 1 571 -14 6 1229 672 259 0 14 chr1 84472314 84472455 -112722977 + ID_B1 SINE B4 86 224 0 6 1229 1106 107 0 8 chr1 84472485 84472720 -112722712 + (GA)n Simple_repeat Simple_repeat 1 233 0 6 1229 398 82 35 12 chr1 84472722 84472808 -112722624 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 6 1229 32 26 0 0 chr1 84473784 84473823 -112721609 + AT_rich Low_complexity Low_complexity 1 39 0 6 1229 455 175 0 0 chr1 84474382 84474462 -112720970 - RMER21B LTR ERV1 -5 837 758 6 1229 4102 117 139 15 chr1 84474463 84475176 -112720256 - RMER21B LTR ERV1 -20 822 22 6 1229 264 286 43 0 chr1 84475212 84475282 -112720150 - MIR3 SINE MIR -54 154 82 6 1229 345 245 57 38 chr1 84475363 84475469 -112719963 + PB1D7 SINE Alu 13 120 0 6 1229 826 191 7 0 chr1 84475487 84475623 -112719809 + B1_Mur4 SINE Alu 1 137 -13 6 1229 207 0 0 0 chr1 84475628 84475651 -112719781 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1229 363 60 0 0 chr1 84477002 84477052 -112718380 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1229 198 0 0 0 chr1 84477141 84477163 -112718269 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 1229 463 231 37 14 chr1 84477725 84477870 -112717562 + MTE2b LTR MaLR 217 379 0 6 1229 7388 37 2 5 chr1 84478055 84478934 -112716498 - L1Md_F2 LINE L1 0 6582 5706 7 1229 963 40 0 0 chr1 84479065 84479189 -112716243 + (TG)n Simple_repeat Simple_repeat 1 124 0 7 1229 459 0 0 0 chr1 84479226 84479277 -112716155 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1229 216 0 0 0 chr1 84479277 84479300 -112716132 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1229 622 250 0 8 chr1 84479320 84479445 -112715987 - RSINE1 SINE B4 -39 126 3 7 1229 315 0 0 0 chr1 84480045 84480080 -112715352 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1229 6912 52 5 5 chr1 84480082 84480898 -112714534 + L1Md_F2 LINE L1 5767 6582 0 7 1229 1345 175 204 43 chr1 84480929 84481257 -112714175 + ORR1C2 LTR MaLR 1 381 -3 7 1229 1222 82 0 0 chr1 84481430 84481577 -112713855 + B1_Mm SINE Alu 1 147 0 7 1229 495 230 137 16 chr1 84481717 84481907 -112713525 + MER20 DNA MER1_type 5 217 -2 7 1229 245 264 165 43 chr1 84483879 84483994 -112711438 + MER5A DNA MER1_type 1 129 -60 7 1229 346 271 80 45 chr1 84484015 84484127 -112711305 + B4A SINE B4 1 116 -176 7 1229 2101 180 5 21 chr1 84484316 84484696 -112710736 + RLTR14 LTR ERV1 1 374 -8 7 1229 403 117 0 0 chr1 84484829 84484889 -112710543 - HAL1-3A_ME LINE L1 -823 2035 1976 7 1229 294 246 14 14 chr1 84484911 84485047 -112710385 + (TG)n Simple_repeat Simple_repeat 1 136 0 7 1229 231 365 56 0 chr1 84485494 84485601 -112709831 - L2 LINE L2 -658 2761 2649 7 1229 275 301 0 41 chr1 84486099 84486196 -112709236 + GA-rich Low_complexity Low_complexity 5 97 0 7 1229 547 286 153 51 chr1 84486345 84486771 -112708661 + L1MB8 LINE L1 5701 6178 0 7 1229 225 275 122 132 chr1 84487057 84487153 -112708279 + L2a LINE L2 2968 3044 -382 7 1229 822 300 94 24 chr1 84487153 84487494 -112707938 - MLT1A0 LTR MaLR 0 365 1 7 1229 225 275 122 132 chr1 84487494 84487602 -112707830 + L2a LINE L2 3045 3170 -256 7 1229 241 339 15 17 chr1 84487746 84487868 -112707564 + L2a LINE L2 3269 3426 0 7 1229 271 295 22 11 chr1 84488725 84488814 -112706618 - MLT2B4 LTR ERVL -191 365 276 7 1229 1236 255 85 34 chr1 84489222 84489600 -112705832 + Lx8 LINE L1 7076 7472 -1 7 1229 232 263 105 0 chr1 84490091 84490167 -112705265 + ORR1E LTR MaLR 273 356 -3 7 1229 194 220 49 33 chr1 84490300 84490361 -112705071 - L2 LINE L2 -955 2464 2403 7 1229 4471 182 80 29 chr1 84492138 84492795 -112702637 + Lx9 LINE L1 6526 7205 -439 7 1229 2145 93 83 77 chr1 84492795 84492852 -112702580 + ORR1A2 LTR MaLR 1 57 -270 7 1229 1075 112 119 45 chr1 84492852 84493029 -112702403 + B2_Mm2 SINE B2 2 191 -4 7 1229 2145 93 83 77 chr1 84493029 84493296 -112702136 + ORR1A2 LTR MaLR 58 327 0 7 1229 4471 182 80 29 chr1 84493296 84493577 -112701855 + Lx9 LINE L1 7206 7483 -161 7 1229 1269 71 0 0 chr1 84493577 84493932 -112701500 + (TG)n Simple_repeat Simple_repeat 1 355 0 7 1229 4471 182 80 29 chr1 84493932 84494015 -112701417 + Lx9 LINE L1 7484 7601 -43 7 1229 876 262 166 31 chr1 84494140 84494562 -112700870 + Lx8 LINE L1 6995 7473 0 7 1229 559 118 0 29 chr1 84494656 84494761 -112700671 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 7 1229 238 36 0 0 chr1 84494762 84494790 -112700642 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1229 1130 262 47 14 chr1 84495099 84495378 -112700054 - B4 SINE B4 -1 291 4 7 1229 248 301 9 3 chr1 84495505 84495577 -112699855 - PB1D10 SINE Alu -66 83 10 7 1229 1846 237 93 0 chr1 84496305 84496811 -112698621 + Lx3C LINE L1 6413 6965 -11 7 1229 317 328 50 14 chr1 84497479 84497618 -112697814 + L4 LINE RTE 803 946 -1083 7 1229 1465 85 0 0 chr1 84498670 84498847 -112696585 + B2_Mm2 SINE B2 3 179 -16 7 1229 193 294 0 42 chr1 84498885 84498956 -112696476 - L2a LINE L2 0 3426 3359 7 1229 896 106 6 8 chr1 84499006 84499149 -112696283 - B1_Mur3 SINE Alu 0 150 1 7 1229 180 319 125 0 chr1 84499287 84499359 -112696073 - L2a LINE L2 -423 2996 2916 7 1229 513 302 137 5 chr1 84499374 84499564 -112695868 + MER20 DNA MER1_type 1 215 -4 7 1229 492 224 122 0 chr1 84500270 84500377 -112695055 + PB1D7 SINE Alu 1 120 0 1 1229 523 295 0 0 chr1 84500382 84500494 -112694938 + ID_B1 SINE B4 92 203 -21 2 1229 999 155 0 0 chr1 84500503 84500677 -112694755 + GA-rich Low_complexity Low_complexity 4 177 0 3 1229 210 371 97 34 chr1 84500709 84500885 -112694547 + L4 LINE RTE 1451 1637 -392 4 1229 809 193 222 0 chr1 84501549 84501725 -112693707 + B3 SINE B2 1 215 -1 5 1229 234 291 38 0 chr1 84502755 84502834 -112692598 + MTEa LTR MaLR 284 365 -14 6 1229 305 198 0 11 chr1 84502984 84503076 -112692356 + CT-rich Low_complexity Low_complexity 1 91 0 7 1229 418 252 153 61 chr1 84504332 84504594 -112690838 + B4A SINE B4 5 290 -2 8 1229 868 64 35 0 chr1 84504607 84504748 -112690684 + (TC)n Simple_repeat Simple_repeat 1 146 0 9 1229 569 189 0 22 chr1 84504751 84504935 -112690497 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1229 23 78 0 0 chr1 84504971 84505022 -112690410 + AT_rich Low_complexity Low_complexity 1 51 0 1 1229 1003 193 35 25 chr1 84505615 84505817 -112689615 + B3 SINE B2 6 209 -7 1 1229 588 172 0 0 chr1 84506561 84506677 -112688755 + CT-rich Low_complexity Low_complexity 1 116 0 1 1229 366 195 0 0 chr1 84506707 84506789 -112688643 + GA-rich Low_complexity Low_complexity 1 82 0 1 1229 1911 108 24 60 chr1 84506948 84507284 -112688148 + ORR1A4 LTR MaLR 1 324 -5 1 1229 401 295 79 28 chr1 84507372 84507550 -112687882 - MLT1B LTR MaLR -14 376 190 1 1229 1273 256 38 68 chr1 84507791 84508260 -112687172 + L1_Rod LINE L1 4608 5062 -785 1 1229 609 217 8 0 chr1 84508286 84508406 -112687026 + B3 SINE B2 92 212 -4 1 1229 869 219 14 56 chr1 84508877 84509090 -112686342 - B3 SINE B2 -12 204 1 1 1229 3096 69 13 3 chr1 84509222 84509614 -112685818 + MTA_Mm LTR MaLR 1 396 0 2 1229 671 253 72 58 chr1 84510553 84510830 -112684602 - B4 SINE B4 -11 281 1 2 1229 359 197 0 0 chr1 84510868 84510929 -112684503 + B1F SINE Alu 68 128 -21 2 1229 698 278 90 45 chr1 84511475 84511765 -112683667 - Lx8 LINE L1 -2 7471 7169 2 1229 1013 239 39 28 chr1 84512142 84512426 -112683006 - Lx8 LINE L1 -317 7156 6870 2 1229 322 222 172 0 chr1 84512742 84512841 -112682591 + PB1D10 SINE Alu 1 116 -1 2 1229 756 264 163 9 chr1 84514236 84514414 -112681018 + B4A SINE B4 1 216 -76 2 1229 531 0 0 0 chr1 84514414 84514473 -112680959 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 1229 756 264 163 9 chr1 84514473 84514527 -112680905 + B4A SINE B4 217 268 -24 2 1229 180 111 0 0 chr1 84514531 84514558 -112680874 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1229 240 130 0 0 chr1 84514682 84514728 -112680704 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1229 645 237 7 35 chr1 84515950 84516094 -112679338 + B1_Mur1 SINE Alu 2 141 -8 2 1229 447 68 0 0 chr1 84516130 84516189 -112679243 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 3 1229 1801 160 52 60 chr1 84516190 84516575 -112678857 + ORR1C2 LTR MaLR 3 384 0 3 1229 594 0 0 0 chr1 84516576 84516642 -112678790 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 3 1229 403 274 196 70 chr1 84516670 84516971 -112678461 + L1MB5 LINE L1 5411 5736 -147 3 1229 346 212 119 30 chr1 84517120 84517225 -112678207 + B1_Mus1 SINE Alu 7 111 -9 3 1229 486 0 0 0 chr1 84517225 84517279 -112678153 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1229 180 0 0 0 chr1 84517411 84517431 -112678001 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 3 1229 622 247 115 14 chr1 84517444 84517723 -112677709 + L1MB5 LINE L1 5798 6104 -70 3 1229 187 215 15 15 chr1 84518736 84518802 -112676630 + GA-rich Low_complexity Low_complexity 3 68 0 3 1229 2186 256 75 62 chr1 84519070 84520038 -112675394 + Charlie1 DNA MER1_type 1801 2781 0 3 1229 371 275 18 18 chr1 84520273 84520384 -112675048 - PB1D10 SINE Alu -1 116 6 3 1229 948 110 52 0 chr1 84520467 84520621 -112674811 + L1_Mus3 LINE L1 6471 6632 -6 4 1229 23 0 0 0 chr1 84520621 84520644 -112674788 + AT_rich Low_complexity Low_complexity 1 23 0 4 1229 689 241 21 21 chr1 84520655 84520795 -112674637 + RSINE1 SINE B4 4 143 -22 4 1229 342 0 0 0 chr1 84520802 84520840 -112674592 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1229 439 238 19 28 chr1 84520842 84520950 -112674482 + B1_Mus2 SINE Alu 15 121 -26 4 1229 552 268 112 93 chr1 84521688 84521956 -112673476 + B4A SINE B4 2 274 -18 4 1229 239 79 26 0 chr1 84522008 84522046 -112673386 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1229 474 147 116 0 chr1 84522552 84522647 -112672785 + ID_B1 SINE B4 115 220 -4 4 1229 587 51 0 12 chr1 84522852 84522932 -112672500 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 4 1229 426 121 0 0 chr1 84523565 84523631 -112671801 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1229 650 285 109 27 chr1 84523639 84523769 -112671663 - B4A SINE B4 -14 278 127 5 1229 504 0 0 0 chr1 84523769 84523825 -112671607 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1229 650 285 109 27 chr1 84523825 84523950 -112671482 - B4A SINE B4 -166 126 2 5 1229 1210 62 0 0 chr1 84523995 84524141 -112671291 - B1_Mm SINE Alu 0 147 2 5 1229 786 254 119 43 chr1 84526749 84527119 -112668313 + MLT2D LTR ERVL 1 398 -66 5 1229 331 147 162 0 chr1 84527268 84527336 -112668096 + B4 SINE B4 2 80 -212 5 1229 351 191 124 0 chr1 84527337 84527426 -112668006 + Lx4A LINE L1 6959 7058 0 5 1229 25 31 0 0 chr1 84527426 84527458 -112667974 + AT_rich Low_complexity Low_complexity 1 32 0 5 1229 822 281 0 0 chr1 84527462 84527654 -112667778 + B4 SINE B4 83 274 -18 5 1229 195 129 0 0 chr1 84527673 84527704 -112667728 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1229 216 179 0 0 chr1 84528279 84528318 -112667114 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1229 850 281 110 0 chr1 84528434 84528697 -112666735 + B4A SINE B4 1 292 0 6 1229 1232 244 70 22 chr1 84529258 84529622 -112665810 + Lx7 LINE L1 5589 5968 -1676 6 1229 30 27 0 0 chr1 84529818 84529855 -112665577 + AT_rich Low_complexity Low_complexity 1 37 0 6 1229 282 217 0 0 chr1 84531307 84531376 -112664056 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1229 22 0 0 0 chr1 84531384 84531406 -112664026 + AT_rich Low_complexity Low_complexity 1 22 0 6 1229 261 0 0 0 chr1 84532130 84532159 -112663273 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1229 297 0 0 0 chr1 84532159 84532191 -112663241 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1229 477 50 0 0 chr1 84532214 84532274 -112663158 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1229 1111 261 32 7 chr1 84533681 84533963 -112661469 - B4 SINE B4 -2 290 2 6 1229 354 242 62 10 chr1 84534540 84534636 -112660796 + B1F1 SINE Alu 1 101 -48 6 1229 880 222 11 6 chr1 84534866 84535047 -112660385 + B3A SINE B2 1 182 -16 7 1229 850 142 13 26 chr1 84535086 84535238 -112660194 + B1_Mur4 SINE Alu 1 150 0 7 1229 393 70 0 0 chr1 84535238 84535295 -112660137 + (A)n Simple_repeat Simple_repeat 1 57 0 7 1229 233 163 20 0 chr1 84535323 84535372 -112660060 + GA-rich Low_complexity Low_complexity 3 52 0 7 1229 24 0 0 0 chr1 84535848 84535872 -112659560 + AT_rich Low_complexity Low_complexity 1 24 0 7 1229 755 257 69 89 chr1 84535970 84536182 -112659250 + B4A SINE B4 8 228 -64 7 1229 959 224 30 5 chr1 84536182 84536384 -112659048 + B3 SINE B2 1 207 -9 7 1229 755 257 69 89 chr1 84536384 84536462 -112658970 + B4A SINE B4 229 292 0 7 1229 238 388 0 0 chr1 84536462 84536578 -112658854 + (CA)n Simple_repeat Simple_repeat 1 116 0 7 1229 1261 264 50 28 chr1 84537191 84537588 -112657844 + RMER5 LTR ERV1 114 519 -15 7 1229 803 168 51 0 chr1 84538161 84538298 -112657134 + B1_Mus2 SINE Alu 1 144 -3 7 1229 342 0 0 0 chr1 84538298 84538336 -112657096 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 8 1229 418 266 99 69 chr1 84538361 84538563 -112656869 - Lx8 LINE L1 -9 7464 7257 8 1229 2191 104 27 59 chr1 84538661 84538998 -112656434 + ORR1A3 LTR MaLR 1 326 0 8 1229 3757 16 121 0 chr1 84538999 84539439 -112655993 - MT2_Mm LTR ERVL 0 493 1 8 1229 321 0 0 0 chr1 84539439 84539477 -112655955 - MERVL-int LTR ERVL 0 5485 5448 8 1229 320 139 26 53 chr1 84539477 84539553 -112655879 - ORR1A3-int LTR MaLR -1323 640 567 8 153 48894 16 0 0 chr1 84539553 84544925 -112650507 - MERVL-int LTR ERVL -114 5371 1 8 1230 3757 16 121 0 chr1 84544925 84545365 -112650067 - MT2_Mm LTR ERVL 0 493 1 8 1230 201 132 0 0 chr1 84545504 84545542 -112649890 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 8 1230 722 214 21 0 chr1 84545542 84545682 -112649750 - B1_Mur2 SINE Alu -1 148 6 8 1230 219 211 278 0 chr1 84545838 84545928 -112649504 - PB1D7 SINE Alu -1 119 5 8 1230 383 304 31 62 chr1 84547212 84547405 -112648027 - RLTR23 LTR ERV1 0 430 244 8 1230 615 278 51 32 chr1 84547961 84548177 -112647255 - ID_B1 SINE B4 0 224 5 8 1230 1228 155 61 5 chr1 84548271 84548485 -112646947 - URR1A DNA MER1_type 0 226 1 9 1230 202 243 65 39 chr1 84549140 84549217 -112646215 + MIR SINE MIR 102 180 -82 9 1230 219 217 0 0 chr1 84549290 84549350 -112646082 + (CAT)n Simple_repeat Simple_repeat 3 62 0 9 1230 772 291 86 31 chr1 84549411 84549702 -112645730 - MLT1A0 LTR MaLR -28 337 31 9 1230 24 0 0 0 chr1 84549828 84549852 -112645580 + AT_rich Low_complexity Low_complexity 1 24 0 9 1230 418 262 71 56 chr1 84549915 84550113 -112645319 + RMER15 LTR ERVL 2 202 -373 9 1230 244 331 150 33 chr1 84550104 84550257 -112645175 + RMER15 LTR ERVL 306 476 -99 9 1230 849 262 63 68 chr1 84551521 84551704 -112643728 - MTE2a LTR MaLR 0 379 191 9 1230 459 0 0 0 chr1 84551704 84551755 -112643677 + (CTTG)n Simple_repeat Simple_repeat 4 54 0 9 1230 849 262 63 68 chr1 84551755 84551952 -112643480 - MTE2a LTR MaLR -189 190 2 9 1230 1117 245 82 13 chr1 84552762 84553068 -112642364 + ORR1D2 LTR MaLR 5 331 -39 9 1230 459 0 0 0 chr1 84553075 84553126 -112642306 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1230 270 0 0 0 chr1 84554566 84554596 -112640836 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1230 350 42 21 0 chr1 84554600 84554648 -112640784 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 1 1230 359 236 45 0 chr1 84554661 84554771 -112640661 + (TGGA)n Simple_repeat Simple_repeat 3 117 0 1 1230 399 261 109 0 chr1 84554887 84555006 -112640426 - B1F1 SINE Alu -5 144 13 1 1230 219 330 37 19 chr1 84555263 84555371 -112640061 - L2a LINE L2 -43 3383 3274 1 1230 183 139 0 0 chr1 84556342 84556378 -112639054 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1230 1063 236 80 77 chr1 84556762 84557138 -112638294 + MTEa LTR MaLR 1 377 -2 1 1230 639 0 0 0 chr1 84559175 84559246 -112636186 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 1 1230 448 268 41 35 chr1 84559253 84559423 -112636009 + GA-rich Low_complexity Low_complexity 2 172 0 1 1230 3111 68 15 7 chr1 84559426 84559829 -112635603 + MTB_Mm LTR MaLR 2 407 0 1 1230 555 228 102 0 chr1 84560522 84560649 -112634783 + B1_Mur1 SINE Alu 10 149 0 1 1230 38434 51 1 7 chr1 84560681 84566725 -112628707 - L1Md_F2 LINE L1 0 6582 631 1 1230 1299 110 0 0 chr1 84566732 84566914 -112628518 - L1_Mm LINE L1 -888 4995 4814 1 1230 2928 134 43 102 chr1 84566914 84567005 -112628427 + L1_Mur2 LINE L1 4246 4335 -1542 1 1230 1119 81 0 20 chr1 84567005 84567156 -112628276 + B1_Mus1 SINE Alu 1 148 0 1 1230 2928 134 43 102 chr1 84567156 84567664 -112627768 + L1_Mur2 LINE L1 4336 4810 -1067 1 1230 31262 37 0 0 chr1 84568317 84572048 -112623384 + L1Md_T LINE L1 1856 5586 -297 1 1230 9106 8 0 0 chr1 84572048 84573044 -112622388 + L1Md_T LINE L1 5587 6582 0 1 1230 183 100 0 0 chr1 84573079 84573109 -112622323 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 1 1230 260 53 0 26 chr1 84573232 84573271 -112622161 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1230 288 0 0 0 chr1 84573425 84573457 -112621975 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1230 536 128 88 3 chr1 84573457 84573567 -112621865 - B1_Mur3 SINE Alu -21 128 5 1 1230 224 225 0 0 chr1 84573837 84573877 -112621555 + polypyrimidine Low_complexity Low_complexity 1 40 0 1 1230 495 0 0 0 chr1 84573877 84573932 -112621500 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1230 525 295 75 88 chr1 84574439 84574733 -112620699 + ID_B1 SINE B4 3 292 0 1 1230 447 202 0 0 chr1 84574736 84574845 -112620587 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1230 225 186 0 0 chr1 84574852 84574895 -112620537 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 1 1230 644 231 35 0 chr1 84576093 84576236 -112619196 + B1_Mur1 SINE Alu 1 148 -1 1 1230 276 212 0 0 chr1 84576330 84576396 -112619036 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1230 241 239 68 40 chr1 84580201 84580275 -112615157 - ID4 SINE ID -1 82 7 1 1230 275 162 12 0 chr1 84580311 84580391 -112615041 + T-rich Low_complexity Low_complexity 4 84 0 1 1230 248 151 75 0 chr1 84580401 84580454 -112614978 - PB1D9 SINE Alu 0 120 64 1 1230 908 309 99 21 chr1 84580457 84580973 -112614459 + Lx8 LINE L1 6916 7471 -2 1 1230 226 79 15 60 chr1 84581014 84581081 -112614351 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1230 43 56 0 0 chr1 84581099 84581170 -112614262 + AT_rich Low_complexity Low_complexity 1 71 0 1 1230 403 336 40 0 chr1 84581182 84581307 -112614125 + B1F1 SINE Alu 2 131 -18 1 1230 265 274 52 17 chr1 84581312 84581427 -112614005 + Lx8 LINE L1 6989 7107 -366 1 1230 325 250 0 0 chr1 84581662 84581726 -112613706 + BC1_Mm scRNA scRNA 18 81 -71 1 1230 246 62 0 0 chr1 84582118 84582150 -112613282 + (CTG)n Simple_repeat Simple_repeat 3 34 0 1 1230 191 298 39 0 chr1 84583514 84583618 -112611814 + L2a LINE L2 3026 3133 -293 1 1230 194 288 17 0 chr1 84583682 84583741 -112611691 + L2a LINE L2 3305 3364 -62 1 1230 243 88 0 0 chr1 84584757 84584791 -112610641 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1230 786 314 30 30 chr1 84584792 84585061 -112610371 - B4A SINE B4 -22 270 2 1 1230 236 335 91 56 chr1 84585389 84585838 -112609594 + L2a LINE L2 2935 3399 -27 1 1230 213 39 0 0 chr1 84586784 84586810 -112608622 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1230 438 280 29 77 chr1 84587573 84587743 -112607689 + L1M5 LINE L1 3979 4140 -2006 1 1230 526 248 48 48 chr1 84587873 84588038 -112607394 + RSINE1 SINE B4 1 165 0 1 1230 767 151 16 0 chr1 84588085 84588211 -112607221 - B1_Mur1 SINE Alu -9 140 13 1 1230 414 0 0 0 chr1 84588573 84588619 -112606813 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 1230 520 78 9 80 chr1 84588636 84588748 -112606684 + L1_Mus3 LINE L1 6534 6637 -1 1 1230 1476 66 0 6 chr1 84588760 84588942 -112606490 - B2_Mm2 SINE B2 -14 181 1 1 1230 459 0 0 0 chr1 84589387 84589438 -112605994 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1230 236 354 39 33 chr1 84589980 84590161 -112605271 + Tigger10 DNA Tigger 486 667 -1176 1 1230 2485 36 62 0 chr1 84590404 84590710 -112604722 + L1Md_F2 LINE L1 6243 6567 -15 1 1230 293 353 32 2 chr1 84591468 84591674 -112603758 - MIR SINE MIR 0 268 52 1 1230 3268 40 2 37 chr1 84591894 84592304 -112603128 - MTA_Mm LTR MaLR 0 396 1 1 1230 1014 233 5 5 chr1 84592363 84592574 -112602858 + B3 SINE B2 1 211 -5 1 1230 1642 219 183 61 chr1 84592788 84593314 -112602118 + RMER1A Other Other 301 872 -158 1 1230 360 0 0 0 chr1 84593314 84593354 -112602078 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1230 1642 219 183 61 chr1 84593354 84593478 -112601954 + RMER1A Other Other 873 1029 -1 1 1230 372 315 173 8 chr1 84593515 84593752 -112601680 + MER119 DNA MER1_type 307 582 -1 1 1230 292 330 37 9 chr1 84593809 84593916 -112601516 + MTEa LTR MaLR 69 178 -201 1 1230 241 163 0 58 chr1 84593946 84593998 -112601434 + C-rich Low_complexity Low_complexity 6 54 0 1 1230 253 297 40 0 chr1 84594002 84594076 -112601356 + MLT1A1 LTR MaLR 291 367 -41 1 1230 440 286 97 51 chr1 84596358 84596553 -112598879 + B4A SINE B4 85 288 -4 1 1230 947 231 84 23 chr1 84596827 84597088 -112598344 + Lx8 LINE L1 7197 7473 0 1 1230 533 245 0 0 chr1 84597227 84597329 -112598103 + Lx9 LINE L1 6619 6720 -924 1 1230 1253 303 77 22 chr1 84597419 84598255 -112597177 + Lx8 LINE L1 6553 7466 -7 1 1230 402 21 0 0 chr1 84598623 84598670 -112596762 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1230 4068 50 6 13 chr1 84598762 84599284 -112596148 + L1Md_F2 LINE L1 6065 6582 0 1 1230 379 277 54 66 chr1 84599786 84599808 -112595624 - RSINE1 SINE B4 0 165 148 1 1230 324 0 0 0 chr1 84599808 84599844 -112595588 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1230 379 277 54 66 chr1 84599844 84599987 -112595445 - RSINE1 SINE B4 -18 147 2 1 1230 1645 190 156 23 chr1 84600122 84600564 -112594868 - RMER15 LTR ERVL -14 561 61 1 1230 21 36 0 0 chr1 84600741 84600769 -112594663 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 543 254 8 15 chr1 84601177 84601309 -112594123 + ID_B1 SINE B4 89 219 -5 1 1230 1004 264 80 37 chr1 84602184 84602558 -112592874 + MLT1B LTR MaLR 1 390 0 1 1230 456 323 39 0 chr1 84602559 84602689 -112592743 + RSINE1 SINE B4 2 136 -29 1 1230 1327 41 7 0 chr1 84602975 84603145 -112592287 + L1Md_F3 LINE L1 5401 5585 -298 1 1230 8637 19 8 3 chr1 84603146 84604139 -112591293 + L1Md_F3 LINE L1 5587 6584 0 1 1230 273 326 20 10 chr1 84604344 84604443 -112590989 + ID_B1 SINE B4 103 202 -22 1 1230 652 330 62 53 chr1 84604531 84604768 -112590664 + MER92B LTR ERV1 10 254 -382 1 1230 1156 250 59 82 chr1 84604768 84605156 -112590276 + MTE2a LTR MaLR 1 379 0 1 1230 652 330 62 53 chr1 84605156 84605273 -112590159 + MER92B LTR ERV1 255 367 -269 1 1230 1555 164 89 22 chr1 84605318 84605473 -112589959 - ORR1C2 LTR MaLR -36 348 191 1 1230 288 0 0 0 chr1 84605473 84605505 -112589927 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 1 1230 1555 164 89 22 chr1 84605505 84605673 -112589759 - ORR1C2 LTR MaLR -194 190 3 1 1230 351 0 0 0 chr1 84606709 84606748 -112588684 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1230 354 23 0 0 chr1 84606747 84606790 -112588642 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1230 490 196 42 0 chr1 84606823 84606944 -112588488 - B1_Mur2 SINE Alu -21 129 3 1 1230 319 321 0 0 chr1 84607170 84607251 -112588181 + ID4_ SINE ID 2 82 -1 1 1230 405 58 0 0 chr1 84607328 84607380 -112588052 + (GTATG)n Simple_repeat Simple_repeat 3 54 0 1 1230 189 94 0 0 chr1 84607727 84607759 -112587673 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1230 1093 68 7 58 chr1 84607759 84607914 -112587518 - B1_Mus1 SINE Alu 0 148 2 1 1230 1246 27 0 0 chr1 84609049 84609195 -112586237 - B1_Mm SINE Alu 0 147 2 1 1230 652 243 110 0 chr1 84609486 84609659 -112585773 - B3 SINE B2 -24 192 1 1 1230 21 0 0 0 chr1 84609662 84609683 -112585749 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 281 273 40 52 chr1 84611157 84611294 -112584138 + MLT1G1 LTR MaLR 7 156 -439 1 1230 768 11 0 0 chr1 84611961 84612050 -112583382 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1230 270 296 136 70 chr1 84612272 84612530 -112582902 - B4 SINE B4 -16 276 2 1 1230 231 103 0 0 chr1 84612780 84612819 -112582613 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1230 373 254 104 126 chr1 84613343 84613478 -112581954 - B4A SINE B4 -2 290 159 1 1230 898 180 157 11 chr1 84613829 84614014 -112581418 - B3 SINE B2 0 216 5 1 1230 1090 276 96 49 chr1 84614298 84614705 -112580727 - RMER5 LTR ERV1 -105 429 4 1 1230 556 270 21 29 chr1 84615166 84615326 -112580106 + B1F2 SINE Alu 1 150 0 1 1230 189 0 0 0 chr1 84615329 84615350 -112580082 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1230 430 296 86 36 chr1 84615565 84615705 -112579727 + RSINE1 SINE B4 2 148 -17 1 1230 714 139 17 0 chr1 84616475 84616590 -112578842 + B1_Mur3 SINE Alu 1 117 -32 1 1230 758 256 5 30 chr1 84616618 84616819 -112578613 - B3A SINE B2 0 198 3 1 1230 1167 68 0 27 chr1 84616848 84616998 -112578434 - B1_Mus2 SINE Alu 0 147 2 2 1230 29 28 0 0 chr1 84617011 84617047 -112578385 + AT_rich Low_complexity Low_complexity 1 36 0 2 1230 1125 112 4 4 chr1 84617328 84617604 -112577828 + (CA)n Simple_repeat Simple_repeat 1 276 0 2 1230 336 276 0 58 chr1 84618447 84618551 -112576881 - MamRep38 DNA hAT -108 187 90 2 1230 193 304 109 0 chr1 84619160 84619252 -112576180 - MIR SINE MIR -123 139 38 2 1230 327 180 7 52 chr1 84620012 84620147 -112575285 + C-rich Low_complexity Low_complexity 1 129 0 2 1230 654 215 232 22 chr1 84620157 84620338 -112575094 + ORR1D1 LTR MaLR 148 366 -8 2 1230 855 131 0 0 chr1 84621793 84621930 -112573502 + (TTTC)n Simple_repeat Simple_repeat 3 139 0 2 1230 3030 86 10 0 chr1 84621991 84622387 -112573045 + MTB LTR MaLR 1 400 0 2 1230 2070 153 27 6 chr1 84622499 84622835 -112572597 + Lx4A LINE L1 6715 7057 -1 2 1230 354 297 140 12 chr1 84622871 84623051 -112572381 + L1M4 LINE L1 4745 4939 -1201 2 1230 260 309 0 14 chr1 84623347 84623416 -112572016 - MIR3 SINE MIR -42 166 99 2 1230 291 246 167 0 chr1 84623611 84623725 -112571707 - RMER15 LTR ERVL -57 518 386 2 1230 246 32 0 0 chr1 84624668 84624699 -112570733 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 2 1230 535 269 0 0 chr1 84624724 84624832 -112570600 - RSINE1 SINE B4 -42 123 16 2 1230 539 261 22 29 chr1 84625214 84625352 -112570080 + B1F1 SINE Alu 1 137 -12 2 1230 188 35 35 0 chr1 84626792 84626821 -112568611 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1230 1058 187 59 72 chr1 84626859 84627208 -112568224 + RLTRETN_Mm LTR ERVK 9 407 -2 2 1230 275 299 59 39 chr1 84627451 84627463 -112567969 + YREP_Mm Unknown Unknown 169 230 -1582 2 1230 718 202 0 16 chr1 84627463 84627589 -112567843 - ID_B1 SINE B4 -8 216 93 2 1230 275 299 59 39 chr1 84627589 84627604 -112567828 + YREP_Mm Unknown Unknown 231 324 -1488 2 1230 508 64 39 0 chr1 84628640 84628718 -112566714 + L1Md_F2 LINE L1 6500 6580 -2 2 1230 824 155 39 33 chr1 84629639 84629792 -112565640 + MT2B LTR ERVL 1 154 -379 2 1230 365 237 13 0 chr1 84629767 84629843 -112565589 + MT2B LTR ERVL 94 170 -363 2 1230 1591 64 5 0 chr1 84629843 84630047 -112565385 - L1_Mus3 LINE L1 -509 6129 5925 2 1230 1762 91 12 0 chr1 84630051 84630304 -112565128 + L1_Mus3 LINE L1 6376 6631 -7 2 1230 1046 254 28 42 chr1 84630328 84630616 -112564816 + MT2B LTR ERVL 318 601 0 2 1230 280 311 31 62 chr1 84631264 84631394 -112564038 + B1F SINE Alu 3 128 -21 2 1230 288 0 0 0 chr1 84631482 84631514 -112563918 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1230 456 19 0 0 chr1 84631529 84631582 -112563850 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1230 1203 205 115 112 chr1 84631591 84631779 -112563653 - MTD LTR MaLR -16 403 191 2 1230 545 253 258 6 chr1 84631779 84631946 -112563486 + B3 SINE B2 2 210 -6 2 1230 1203 205 115 112 chr1 84631946 84632114 -112563318 - MTD LTR MaLR -229 190 46 2 1230 222 295 0 37 chr1 84632118 84632199 -112563233 + GA-rich Low_complexity Low_complexity 3 80 0 2 1230 299 241 51 0 chr1 84632207 84632286 -112563146 + PB1 SINE Alu 27 109 -18 2 1230 270 81 0 0 chr1 84632460 84632497 -112562935 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 2 1230 22 0 0 0 chr1 84632530 84632552 -112562880 + AT_rich Low_complexity Low_complexity 1 22 0 2 1230 868 231 80 0 chr1 84632647 84632846 -112562586 + B3 SINE B2 1 215 -1 2 1230 353 259 70 53 chr1 84634381 84634495 -112560937 + PB1D10 SINE Alu 2 117 0 2 1230 696 132 40 40 chr1 84634509 84634635 -112560797 + B1_Mus1 SINE Alu 1 126 -22 2 1230 315 0 0 0 chr1 84634635 84634670 -112560762 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1230 587 216 112 0 chr1 84634724 84634858 -112560574 - B1_Mur2 SINE Alu 0 149 1 2 1230 352 267 48 48 chr1 84634990 84635116 -112560316 - MER63B DNA AcHobo -16 420 295 2 1230 542 264 110 80 chr1 84635388 84635651 -112559781 - B4A SINE B4 -19 273 3 2 1230 205 29 29 29 chr1 84636912 84636947 -112558485 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 1230 2807 151 23 2 chr1 84637812 84638249 -112557183 + RLTR41 LTR ERV1 1 446 0 2 1230 1022 241 39 25 chr1 84638329 84638614 -112556818 + B4A SINE B4 4 292 0 2 1230 3002 202 4 6 chr1 84639908 84640441 -112554991 + Lx5 LINE L1 6503 7035 -15 2 1230 201 39 0 0 chr1 84640441 84640467 -112554965 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2 1230 186 43 0 0 chr1 84640488 84640511 -112554921 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2 1230 199 125 0 59 chr1 84640597 84640648 -112554784 + GA-rich Low_complexity Low_complexity 1 48 0 2 1230 492 18 0 0 chr1 84640675 84640732 -112554700 + (GAAAA)n Simple_repeat Simple_repeat 5 61 0 2 1230 860 295 102 33 chr1 84641013 84641594 -112553838 - L1MA9 LINE L1 0 6312 5692 2 1230 592 253 109 52 chr1 84641736 84641868 -112553564 - B4A SINE B4 -51 241 99 2 1230 234 0 0 0 chr1 84641868 84641894 -112553538 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1230 592 253 109 52 chr1 84641894 84641953 -112553479 - B4A SINE B4 -194 98 39 2 1230 581 0 14 0 chr1 84642168 84642237 -112553195 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1230 325 309 12 0 chr1 84642596 84642680 -112552752 + PB1D10 SINE Alu 18 102 -15 2 1230 465 270 9 18 chr1 84643002 84643115 -112552317 + B4A SINE B4 1 112 -180 2 1230 5090 112 9 8 chr1 84644082 84644836 -112550596 - RMER6A LTR ERVK 0 756 2 2 1230 1100 130 166 5 chr1 84644895 84645088 -112550344 + URR1A DNA MER1_type 2 225 -1 2 1230 995 188 45 10 chr1 84645483 84645682 -112549750 - B3 SINE B2 -10 206 1 2 1230 527 203 15 0 chr1 84645905 84646038 -112549394 + CT-rich Low_complexity Low_complexity 4 138 0 2 1230 312 138 0 0 chr1 84647022 84647087 -112548345 + (TGG)n Simple_repeat Simple_repeat 3 67 0 2 1230 565 305 18 6 chr1 84647133 84647298 -112548134 - Lx8 LINE L1 -153 7320 7154 2 1230 446 336 0 0 chr1 84647420 84647557 -112547875 - MIR SINE MIR -113 149 13 2 1230 412 292 79 9 chr1 84647894 84648008 -112547424 + B1F2 SINE Alu 2 123 -26 2 1230 788 100 8 0 chr1 84648564 84648684 -112546748 - Lx LINE L1 -6 6648 6528 2 1230 2879 107 48 0 chr1 84648684 84649097 -112546335 - L1_Mm LINE L1 -43 5840 5408 2 1230 741 236 13 7 chr1 84650198 84650347 -112545085 + MTE2b LTR MaLR 16 165 -214 2 1230 1215 304 55 64 chr1 84650346 84650794 -112544638 + MT2A LTR ERVL 24 463 -70 2 1230 737 197 145 16 chr1 84650794 84650980 -112544452 - B3 SINE B2 -5 211 2 2 1230 1215 304 55 64 chr1 84650980 84651045 -112544387 + MT2A LTR ERVL 464 531 -2 2 1230 632 281 71 12 chr1 84651265 84651434 -112543998 - B3A SINE B2 -16 182 4 2 1230 405 358 100 40 chr1 84651873 84652123 -112543309 - L4 LINE RTE -314 1715 1451 2 1230 1036 290 8 15 chr1 84652340 84652606 -112542826 + B4A SINE B4 27 290 -2 2 1230 308 151 0 0 chr1 84652611 84652664 -112542768 + B4A SINE B4 240 292 0 2 1230 476 165 0 15 chr1 84652677 84652812 -112542620 + (CAGAGA)n Simple_repeat Simple_repeat 6 138 0 2 1230 24 32 0 0 chr1 84652900 84652931 -112542501 + AT_rich Low_complexity Low_complexity 1 31 0 2 1230 422 326 52 36 chr1 84654325 84654519 -112540913 + MER3 DNA MER1_type 1 197 -12 2 1230 599 178 9 18 chr1 84654754 84654863 -112540569 + PB1D10 SINE Alu 1 108 -9 2 1230 255 133 0 0 chr1 84655072 84655117 -112540315 + (TCTCCC)n Simple_repeat Simple_repeat 1 45 0 2 1230 193 324 56 28 chr1 84655426 84655534 -112539898 + MIRb SINE MIR 149 259 -9 2 1230 1003 169 6 0 chr1 84655562 84655722 -112539710 + ORR1D1 LTR MaLR 3 163 -211 2 1230 312 27 0 0 chr1 84655722 84655759 -112539673 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1230 685 281 89 11 chr1 84655967 84656237 -112539195 + B4A SINE B4 2 292 0 2 1230 397 248 25 8 chr1 84656241 84656363 -112539069 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1230 2239 155 68 8 chr1 84656364 84656761 -112538671 - MTC LTR MaLR 0 421 1 2 1230 466 248 119 8 chr1 84657075 84657201 -112538231 + B1F2 SINE Alu 9 148 -1 2 1230 548 143 10 0 chr1 84657202 84657300 -112538132 + GA-rich Low_complexity Low_complexity 1 99 0 2 1230 192 40 0 0 chr1 84658926 84658951 -112536481 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 2 1230 369 201 6 22 chr1 84658963 84659146 -112536286 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1230 216 167 0 0 chr1 84659218 84659266 -112536166 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1230 941 218 228 65 chr1 84659268 84659562 -112535870 + ORR1D1 LTR MaLR 3 344 -30 2 1230 198 171 0 0 chr1 84659566 84659607 -112535825 + CT-rich Low_complexity Low_complexity 2 42 0 2 1230 2170 149 54 3 chr1 84659683 84660032 -112535400 - ORR1B2 LTR MaLR 0 367 1 2 1230 1273 27 0 0 chr1 84660384 84660531 -112534901 - B1_Mus2 SINE Alu 0 147 1 2 1230 716 292 39 48 chr1 84660532 84660762 -112534670 - B4A SINE B4 -59 233 6 2 1230 246 75 0 91 chr1 84660770 84660814 -112534618 - ID_B1 SINE B4 -3 221 182 2 1230 249 208 0 0 chr1 84661018 84661071 -112534361 + Lx8 LINE L1 6970 7022 -451 2 1230 445 302 148 62 chr1 84662272 84662651 -112532781 + MLT1C LTR MaLR 1 467 0 2 1230 541 153 72 138 chr1 84663101 84663253 -112532179 + B1_Mur1 SINE Alu 1 142 -7 2 1230 727 250 65 0 chr1 84663350 84663518 -112531914 + B4 SINE B4 108 286 -6 2 1230 246 116 0 0 chr1 84663622 84663665 -112531767 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1230 612 340 44 77 chr1 84663796 84664070 -112531362 + ORR1E LTR MaLR 2 266 -104 2 1230 527 276 91 116 chr1 84664144 84664574 -112530858 + MLT1G1 LTR MaLR 117 535 -44 2 1230 324 273 8 106 chr1 84665711 84665834 -112529598 + MT2B LTR ERVL 147 257 -344 3 1230 479 258 41 16 chr1 84665724 84665846 -112529586 + B4 SINE B4 81 205 -87 3 1230 671 227 8 8 chr1 84665739 84665868 -112529564 + B1_Mur1 SINE Alu 10 138 -11 3 1230 261 0 0 0 chr1 84665995 84666024 -112529408 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1230 249 270 143 0 chr1 84666395 84666458 -112528974 - ID SINE ID -150 74 3 3 1230 836 301 70 9 chr1 84666478 84666693 -112528739 - B4 SINE B4 -63 229 2 3 1230 381 266 128 117 chr1 84667285 84667481 -112527951 + B3A SINE B2 1 198 0 3 1230 327 305 77 26 chr1 84667588 84667743 -112527689 - L1M5 LINE L1 -399 5725 5563 3 1230 1188 49 0 0 chr1 84669777 84669920 -112525512 + B1_Mus2 SINE Alu 5 147 0 3 1230 180 111 0 0 chr1 84669920 84669947 -112525485 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1230 1745 254 24 20 chr1 84670035 84670492 -112524940 + Lx8 LINE L1 6311 6769 -704 3 1230 298 324 9 45 chr1 84670807 84670917 -112524515 + PB1D10 SINE Alu 5 110 -7 3 1230 232 229 106 24 chr1 84671433 84671518 -112523914 + L1M6 LINE L1 2423 2514 -3982 3 1230 206 231 0 0 chr1 84671595 84671634 -112523798 + (ATG)n Simple_repeat Simple_repeat 1 39 0 3 1230 289 213 16 32 chr1 84671663 84671789 -112523643 + GA-rich Low_complexity Low_complexity 2 125 0 3 1230 1916 195 37 32 chr1 84671920 84672323 -112523109 - MTD LTR MaLR -14 405 1 3 1230 639 161 11 178 chr1 84672423 84672477 -112522955 + B1_Mus1 SINE Alu 3 50 -98 3 153 1214 54 0 0 chr1 84672477 84672624 -112522808 + B1_Mus2 SINE Alu 1 147 0 3 1231 639 161 11 178 chr1 84672624 84672640 -112522792 + B1_Mus1 SINE Alu 51 51 -97 3 1231 552 68 0 0 chr1 84672640 84672713 -112522719 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 3 1231 954 106 0 0 chr1 84672713 84672853 -112522579 + (GAAAA)n Simple_repeat Simple_repeat 4 144 0 3 1231 639 161 11 178 chr1 84672853 84672954 -112522478 + B1_Mus1 SINE Alu 51 146 -2 3 1231 477 0 0 0 chr1 84673087 84673140 -112522292 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1231 405 319 68 18 chr1 84673180 84673400 -112522032 - L1MC3 LINE L1 -174 7611 7381 3 1231 227 206 42 42 chr1 84673772 84673843 -112521589 - MTE2b LTR MaLR -31 348 278 3 1231 900 0 0 0 chr1 84674335 84674435 -112520997 + (GGGAA)n Simple_repeat Simple_repeat 1 100 0 3 1231 543 16 0 0 chr1 84674497 84674561 -112520871 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1231 513 230 44 0 chr1 84675086 84675199 -112520233 - MTE2b LTR MaLR -261 118 1 3 1231 660 221 0 0 chr1 84675960 84676073 -112519359 + PB1D7 SINE Alu 1 113 -7 3 1231 822 65 0 0 chr1 84676847 84676955 -112518477 + B1_Mus1 SINE Alu 2 109 -39 3 1231 192 77 0 0 chr1 84676955 84676981 -112518451 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1231 800 91 16 0 chr1 84677062 84677183 -112518249 - B1_Mur4 SINE Alu -5 145 23 3 1231 254 257 94 50 chr1 84677460 84677620 -112517812 + L1M5 LINE L1 5707 5873 -571 3 1231 525 282 0 0 chr1 84677620 84677744 -112517688 + B1F SINE Alu 1 124 -25 3 1231 2184 107 28 0 chr1 84678379 84678696 -112516736 - ORR1A2 LTR MaLR -1 326 1 3 1231 362 250 123 19 chr1 84679039 84679145 -112516287 + RSINE1 SINE B4 8 124 -41 3 1231 2657 220 108 39 chr1 84679147 84679740 -112515692 + Lx7 LINE L1 6910 7503 -193 3 1231 255 122 0 0 chr1 84679740 84679789 -112515643 + (CTTG)n Simple_repeat Simple_repeat 2 50 0 3 1231 2657 220 108 39 chr1 84679789 84679910 -112515522 + Lx7 LINE L1 7504 7672 -24 3 1231 198 71 0 0 chr1 84679966 84679994 -112515438 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 3 1231 809 228 118 20 chr1 84680795 84681041 -112514391 + B4A SINE B4 1 270 -22 3 1231 379 302 40 0 chr1 84681055 84681204 -112514228 - RMER15 LTR ERVL -15 560 406 3 1231 1585 122 45 111 chr1 84681318 84681696 -112513736 + ORR1B1 LTR MaLR 1 353 -41 3 1231 799 43 0 57 chr1 84681696 84681819 -112513613 + B1_Mm SINE Alu 2 117 -30 3 1231 317 91 0 0 chr1 84681822 84681866 -112513566 + ORR1A4 LTR MaLR 278 321 -8 3 1231 2851 26 2 204 chr1 84682129 84682618 -112512814 + RLTR10 LTR ERVK 1 390 0 3 1231 15920 27 24 42 chr1 84682628 84684608 -112510824 + RLTR10-int LTR ERVK 41 1984 -3 3 1231 2851 26 2 204 chr1 84684610 84685099 -112510333 + RLTR10 LTR ERVK 1 390 0 3 1231 365 0 0 22 chr1 84685285 84685331 -112510101 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1231 493 265 0 10 chr1 84685379 84685482 -112509950 - PB1D7 SINE Alu -6 114 13 3 1231 693 280 61 26 chr1 84685582 84685846 -112509586 - B4A SINE B4 -10 282 10 3 1231 198 143 0 0 chr1 84685897 84685932 -112509500 + (CACG)n Simple_repeat Simple_repeat 1 35 0 3 1231 844 183 60 65 chr1 84685935 84686134 -112509298 + B3A SINE B2 1 198 0 3 1231 337 215 226 0 chr1 84686309 84686402 -112509030 + B4 SINE B4 177 290 -2 3 1231 195 42 0 0 chr1 84686791 84686815 -112508617 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1231 323 296 31 0 chr1 84687770 84687868 -112507564 + PB1D10 SINE Alu 12 112 -5 3 1231 598 230 0 31 chr1 84687871 84688001 -112507431 + RSINE1 SINE B4 1 126 -39 3 1231 192 111 0 0 chr1 84688654 84688690 -112506742 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1231 227 121 0 0 chr1 84688794 84688827 -112506605 - tRNA-Gly-GGY tRNA tRNA -40 34 2 3 1231 406 184 143 0 chr1 84688965 84689063 -112506369 - PB1D7 SINE Alu -8 112 1 3 1231 358 330 79 37 chr1 84689131 84689345 -112506087 - LTR52 LTR ERVL -171 250 28 3 1231 619 200 6 105 chr1 84689543 84689705 -112505727 - B2_Mm1a SINE B2 -46 147 2 3 1231 522 184 128 0 chr1 84689707 84689816 -112505616 - ID_B1 SINE B4 -18 206 84 3 1231 897 0 26 0 chr1 84691055 84691168 -112504264 + (TG)n Simple_repeat Simple_repeat 2 117 0 3 1231 264 250 0 0 chr1 84692343 84692399 -112503033 + (CGG)n Simple_repeat Simple_repeat 3 58 0 3 1231 27 0 0 0 chr1 84692462 84692489 -112502943 + GC_rich Low_complexity Low_complexity 1 27 0 3 1231 363 299 0 33 chr1 84693402 84693523 -112501909 + ID_B1 SINE B4 92 208 -16 3 1231 326 288 27 9 chr1 84693523 84693635 -112501797 + GA-rich Low_complexity Low_complexity 4 117 0 3 1231 337 326 35 0 chr1 84694469 84694610 -112500822 - RMER15 LTR ERVL -7 568 423 3 1231 1837 160 156 6 chr1 84695084 84695418 -112500014 - ORR1C2 LTR MaLR 0 384 1 3 1231 405 264 33 8 chr1 84695725 84695870 -112499562 - ORR1E LTR MaLR -223 151 1 3 1231 654 237 8 0 chr1 84695939 84696070 -112499362 - RSINE1 SINE B4 -10 155 24 3 1231 255 186 0 0 chr1 84696072 84696115 -112499317 - MLT1A1 LTR MaLR -75 333 291 3 1231 346 302 98 73 chr1 84696131 84696335 -112499097 - MLT1A1 LTR MaLR -193 215 7 3 1231 566 135 171 0 chr1 84696387 84696498 -112498934 + B1_Mur3 SINE Alu 19 148 -1 3 1231 485 120 0 12 chr1 84696504 84696588 -112498844 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 3 1231 207 162 0 0 chr1 84696583 84696620 -112498812 + A-rich Low_complexity Low_complexity 5 41 0 3 1231 1215 130 0 11 chr1 84696622 84696809 -112498623 + MTC LTR MaLR 196 380 -41 3 1231 230 67 0 100 chr1 84696832 84696882 -112498550 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3 1231 286 135 0 19 chr1 84696882 84696935 -112498497 + MTC LTR MaLR 368 419 0 3 1231 39384 4 0 0 chr1 84697182 84702762 -112492670 + L1Md_A LINE L1 7 5586 -297 3 1231 9239 1 0 0 chr1 84702762 84703758 -112491674 + L1Md_A LINE L1 5587 6582 0 3 1231 457 306 12 64 chr1 84704772 84704943 -112490489 + RSINE1 SINE B4 4 165 0 3 1231 529 279 92 136 chr1 84705078 84705343 -112490089 + L1MA5 LINE L1 5511 5787 -513 3 1231 1360 64 17 6 chr1 84705343 84705517 -112489915 - B2_Mm2 SINE B2 -18 177 2 3 1231 529 255 60 68 chr1 84705517 84705707 -112489725 + L1MA5 LINE L1 5785 5935 -365 3 1231 571 295 0 12 chr1 84706036 84706204 -112489228 + B3A SINE B2 17 182 -16 3 1231 375 196 28 9 chr1 84706205 84706313 -112489119 + C-rich Low_complexity Low_complexity 5 114 0 3 1231 1427 74 21 0 chr1 84707477 84707667 -112487765 + B2_Mm2 SINE B2 1 194 -1 3 1231 984 147 0 0 chr1 84708503 84708646 -112486786 + B1_Mur4 SINE Alu 2 144 -6 3 1231 738 144 0 35 chr1 84708648 84708820 -112486612 + GA-rich Low_complexity Low_complexity 3 168 0 3 1231 765 319 137 67 chr1 84709124 84709571 -112485861 + L1M4 LINE L1 591 1068 -5474 3 1231 1270 21 0 0 chr1 84709795 84709939 -112485493 + B1_Mm SINE Alu 4 147 0 3 1231 204 40 0 0 chr1 84709939 84709964 -112485468 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1231 1181 68 0 0 chr1 84710054 84710200 -112485232 + B1_Mus2 SINE Alu 1 146 -1 3 1231 829 254 79 51 chr1 84710267 84710699 -112484733 + L1M4 LINE L1 1139 1582 -4960 3 1231 948 186 23 6 chr1 84711098 84711271 -112484161 + B3A SINE B2 5 180 -18 3 1231 6419 126 10 103 chr1 84711331 84712257 -112483175 - Lx LINE L1 -12 6642 5718 3 1231 1161 68 0 0 chr1 84712257 84712404 -112483028 + B1_Mus2 SINE Alu 1 147 0 3 1231 6419 126 10 103 chr1 84712404 84712636 -112482796 - Lx LINE L1 -937 5717 5592 3 1231 2586 105 16 10 chr1 84712730 84713181 -112482251 + RMER16 LTR ERVK 1 533 0 3 1231 249 172 0 0 chr1 84713777 84713841 -112481591 + CT-rich Low_complexity Low_complexity 1 64 0 3 1231 1167 94 0 0 chr1 84713841 84714021 -112481411 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1231 244 204 194 0 chr1 84714074 84714172 -112481260 + B3 SINE B2 1 117 -99 3 1231 404 264 62 7 chr1 84714171 84714316 -112481116 - B4A SINE B4 -130 162 10 3 1231 1327 103 11 0 chr1 84714391 84714575 -112480857 + B2_Mm1t SINE B2 2 187 -6 3 1231 859 108 0 152 chr1 84715107 84715271 -112480161 + B1_Mus1 SINE Alu 1 139 -9 3 1231 1108 237 108 32 chr1 84715509 84715853 -112479579 + MTEb LTR MaLR 6 375 -4 3 1231 4109 79 2 2 chr1 84716179 84716726 -112478706 - L1_Mm LINE L1 -481 5402 4856 3 1231 1302 78 0 0 chr1 84716723 84716890 -112478542 + L1_Mm LINE L1 4692 4858 -1025 3 1231 360 240 89 50 chr1 84717145 84717246 -112478186 + B3A SINE B2 58 162 -36 3 1231 252 265 35 35 chr1 84718542 84718628 -112476804 + B4A SINE B4 3 88 -204 3 1231 180 0 0 0 chr1 84719774 84719794 -112475638 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1231 189 0 0 0 chr1 84719992 84720013 -112475419 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1231 696 199 179 12 chr1 84721496 84721669 -112473763 + B3 SINE B2 12 213 -3 4 1231 754 158 66 22 chr1 84723006 84723142 -112472290 + B1_Mur4 SINE Alu 6 147 -3 4 1231 962 46 114 0 chr1 84723742 84723873 -112471559 + B1_Mm SINE Alu 1 146 -1 4 1231 513 0 0 0 chr1 84723884 84723941 -112471491 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4 1231 198 209 0 0 chr1 84726334 84726377 -112469055 + GA-rich Low_complexity Low_complexity 4 46 0 4 1231 234 318 0 43 chr1 84726377 84726446 -112468986 - BC1_Mm scRNA scRNA -84 68 3 4 1231 736 282 46 10 chr1 84726776 84726973 -112468459 + B3 SINE B2 2 205 -11 4 1231 27 0 0 0 chr1 84726981 84727008 -112468424 + AT_rich Low_complexity Low_complexity 1 27 0 4 1231 468 0 0 0 chr1 84727475 84727527 -112467905 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1231 414 0 0 0 chr1 84728707 84728753 -112466679 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 1231 198 0 0 0 chr1 84729295 84729317 -112466115 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 4 1231 1276 43 0 0 chr1 84729317 84729478 -112465954 - B2_Mm2 SINE B2 -34 161 1 4 1231 236 176 0 38 chr1 84730912 84730965 -112464467 + A-rich Low_complexity Low_complexity 4 54 0 4 1231 233 262 2 33 chr1 84730971 84731038 -112464394 - MIR SINE MIR -26 242 173 4 1231 604 329 21 0 chr1 84731220 84731363 -112464069 - RSINE1 SINE B4 -19 146 1 4 1231 1126 75 0 7 chr1 84731405 84731553 -112463879 + B1_Mus1 SINE Alu 2 148 0 4 1231 23 0 0 0 chr1 84731609 84731632 -112463800 + AT_rich Low_complexity Low_complexity 1 23 0 4 1231 344 335 12 49 chr1 84731789 84731952 -112463480 + RSINE1 SINE B4 5 161 -4 4 1231 364 272 39 10 chr1 84732028 84732132 -112463300 + PB1D10 SINE Alu 11 117 0 4 1231 888 36 0 0 chr1 84732182 84732294 -112463138 + B1_Mm SINE Alu 36 147 0 4 1231 389 283 90 42 chr1 84732771 84733148 -112462284 + L1ME1 LINE L1 5589 5983 -196 4 1231 941 163 223 119 chr1 84733717 84734133 -112461299 + RMER15 LTR ERVL 29 575 0 4 1231 667 167 73 29 chr1 84734475 84734611 -112460821 + B1_Mus1 SINE Alu 1 142 -6 4 1231 210 143 0 0 chr1 84734935 84734970 -112460462 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1231 225 310 137 20 chr1 84735057 84735159 -112460273 + B3A SINE B2 61 174 -24 4 1231 292 91 200 0 chr1 84736456 84736511 -112458921 + MTC LTR MaLR 1 66 -355 4 1231 284 152 0 0 chr1 84736503 84736549 -112458883 + MTC LTR MaLR 361 406 -13 4 1231 3989 184 137 104 chr1 84736553 84737492 -112457940 + MTC-int LTR MaLR 1 1052 -206 4 1231 492 59 0 0 chr1 84737492 84737560 -112457872 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1231 3989 184 137 104 chr1 84737560 84737824 -112457608 + MTC-int LTR MaLR 1053 1244 -14 4 1231 601 140 0 0 chr1 84737815 84737908 -112457524 + MTC LTR MaLR 6 98 -323 4 1231 685 225 14 0 chr1 84737912 84738054 -112457378 + B1_Mm SINE Alu 4 147 0 4 1231 975 133 104 0 chr1 84738074 84738247 -112457185 + B2_Mm2 SINE B2 2 192 -3 4 1231 1092 206 78 75 chr1 84738250 84738581 -112456851 + MTC LTR MaLR 90 421 0 4 1231 198 0 0 0 chr1 84738592 84738614 -112456818 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1231 880 116 51 0 chr1 84739317 84739455 -112455977 + B2_Mm2 SINE B2 51 195 0 4 1231 216 191 0 0 chr1 84740337 84740379 -112455053 + A-rich Low_complexity Low_complexity 5 46 0 4 1231 25 75 0 0 chr1 84742108 84742161 -112453271 + AT_rich Low_complexity Low_complexity 1 53 0 4 1231 1105 83 7 0 chr1 84742978 84743123 -112452309 + B1_Mm SINE Alu 2 147 0 4 1231 644 205 0 26 chr1 84743189 84743304 -112452128 + B1_Mur4 SINE Alu 1 112 -38 4 1231 401 196 152 0 chr1 84743389 84743481 -112451951 + PB1D9 SINE Alu 2 107 -13 4 1231 288 0 0 0 chr1 84743481 84743513 -112451919 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1231 587 14 0 14 chr1 84743513 84743585 -112451847 + (TAAA)n Simple_repeat Simple_repeat 3 74 0 4 1231 1216 79 43 48 chr1 84744033 84744220 -112451212 - B2_Mm2 SINE B2 -8 187 2 4 1231 674 229 201 22 chr1 84744298 84744477 -112450955 - B3 SINE B2 -5 211 1 4 1231 375 272 0 45 chr1 84745505 84745616 -112449816 + PB1D9 SINE Alu 1 106 -14 4 1231 969 223 142 0 chr1 84746031 84746264 -112449168 + Lx8 LINE L1 6539 6804 -669 4 1231 198 0 0 0 chr1 84747115 84747137 -112448295 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1231 242 267 0 0 chr1 84747206 84747251 -112448181 + RSINE1 SINE B4 90 134 -31 4 1231 555 303 120 16 chr1 84749361 84749552 -112445880 + B3 SINE B2 3 213 -3 4 1231 572 213 43 35 chr1 84749647 84749788 -112445644 - B1_Mus1 SINE Alu -5 143 2 4 1231 600 264 40 66 chr1 84749970 84750169 -112445263 + B3 SINE B2 1 189 -6 4 1231 21 36 0 0 chr1 84751243 84751271 -112444161 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 344 339 43 65 chr1 84751564 84751587 -112443845 - B4 SINE B4 -45 247 170 4 1231 652 216 74 7 chr1 84751587 84751722 -112443710 - B1_Mur2 SINE Alu 0 149 6 4 1231 344 339 43 65 chr1 84751722 84751750 -112443682 - B4 SINE B4 -45 169 66 4 1231 229 292 42 0 chr1 84752123 84752219 -112443213 + A-rich Low_complexity Low_complexity 5 104 0 4 1231 278 241 45 57 chr1 84752629 84752717 -112442715 + PB1D9 SINE Alu 34 120 0 4 1231 2279 204 149 94 chr1 84752720 84753539 -112441893 + Lx7 LINE L1 6833 7696 0 4 1231 518 288 89 53 chr1 84753557 84753726 -112441706 + B3 SINE B2 2 176 -40 4 1231 30 45 0 0 chr1 84754206 84754250 -112441182 + AT_rich Low_complexity Low_complexity 1 44 0 4 1231 797 58 0 0 chr1 84754961 84755064 -112440368 - B2_Mm2 SINE B2 -92 103 1 4 1231 222 312 127 25 chr1 84755404 84755483 -112439949 + RSINE1 SINE B4 78 164 -1 4 1231 318 299 26 61 chr1 84756262 84756376 -112439056 + PB1D10 SINE Alu 10 119 -1 4 1231 337 322 24 63 chr1 84757048 84757174 -112438258 - MIR3 SINE MIR -52 156 36 4 1231 1136 55 7 0 chr1 84759151 84759297 -112436135 + B1_Mus1 SINE Alu 1 147 -1 4 1231 24 53 0 0 chr1 84759702 84759740 -112435692 + AT_rich Low_complexity Low_complexity 1 38 0 4 1231 865 116 64 14 chr1 84760227 84760367 -112435065 + B1_Mus1 SINE Alu 1 147 -1 4 1231 183 80 0 0 chr1 84760750 84760775 -112434657 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1231 1071 55 7 20 chr1 84760782 84760930 -112434502 - B1_Mus2 SINE Alu 0 147 2 4 1231 578 175 25 0 chr1 84760930 84761050 -112434382 - L1_Mus2 LINE L1 -10 6556 6434 4 1231 2727 96 11 16 chr1 84761052 84761495 -112433937 + MusHAL1 LINE L1 470 910 -1802 4 1231 1628 32 0 0 chr1 84761599 84761786 -112433646 + B2_Mm1t SINE B2 2 188 -5 4 1231 231 353 26 111 chr1 84762079 84762232 -112433200 - B4 SINE B4 -152 140 1 4 1231 21 36 0 0 chr1 84762294 84762322 -112433110 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 24 0 0 0 chr1 84762394 84762418 -112433014 + AT_rich Low_complexity Low_complexity 1 24 0 4 1231 1300 93 22 0 chr1 84763201 84763383 -112432049 + B2_Mm2 SINE B2 1 186 -9 4 1231 782 207 14 0 chr1 84763782 84763927 -112431505 + B1_Mur4 SINE Alu 3 149 -1 4 1231 533 314 77 30 chr1 84764009 84764242 -112431190 - MTE2a LTR MaLR -2 377 134 4 1231 763 59 246 0 chr1 84764488 84764606 -112430826 + B1_Mus2 SINE Alu 1 147 0 4 1231 266 48 0 67 chr1 84764606 84764651 -112430781 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1231 533 330 62 20 chr1 84765355 84765550 -112429882 + B3 SINE B2 11 213 -3 4 1231 272 254 34 0 chr1 84766196 84766255 -112429177 + ID4_ SINE ID 23 83 0 4 1231 429 280 70 39 chr1 84767327 84767483 -112427949 - MER58B DNA MER1_type -26 315 155 4 1231 321 342 81 20 chr1 84768580 84768729 -112426703 + L1MEg LINE L1 1650 1807 -4277 4 1231 647 222 0 33 chr1 84769636 84769757 -112425675 - RSINE1 SINE B4 -5 160 44 4 1231 430 250 91 147 chr1 84769877 84770074 -112425358 + B3 SINE B2 25 210 -6 4 1231 565 300 11 27 chr1 84770296 84770481 -112424951 + B3A SINE B2 2 183 -15 4 1231 990 222 29 0 chr1 84770531 84770738 -112424694 + B3 SINE B2 1 213 -3 4 1231 1209 54 0 0 chr1 84771742 84771889 -112423543 + B1_Mm SINE Alu 1 147 0 4 1231 336 204 290 37 chr1 84772057 84772164 -112423268 - B1_Mm SINE Alu -13 134 1 4 1231 261 359 180 0 chr1 84772201 84772329 -112423103 + RSINE1 SINE B4 2 152 -13 4 1231 459 0 0 0 chr1 84772331 84772382 -112423050 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1231 21 0 0 0 chr1 84773844 84773865 -112421567 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 210 91 0 0 chr1 84774897 84774930 -112420502 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 4 1231 920 181 22 11 chr1 84774932 84775116 -112420316 + B2_Mm2 SINE B2 5 190 -5 4 1231 1036 83 14 7 chr1 84775985 84776130 -112419302 + B1_Mm SINE Alu 1 146 -1 4 1231 207 170 0 0 chr1 84776152 84776199 -112419233 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 1231 760 175 36 21 chr1 84777002 84777142 -112418290 + B1_Mur4 SINE Alu 3 144 -6 4 1231 448 289 23 8 chr1 84777165 84777294 -112418138 + B1_Mur1 SINE Alu 6 136 -13 4 1231 346 294 124 14 chr1 84778088 84778283 -112417149 + MIR SINE MIR 31 238 -24 4 1231 1110 81 0 7 chr1 84780609 84780758 -112414674 + B1_Mus1 SINE Alu 1 148 0 4 1231 993 117 14 20 chr1 84780792 84780931 -112414501 + B1_Mus1 SINE Alu 2 141 -7 4 1231 245 29 0 29 chr1 84780931 84780966 -112414466 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 4 1231 477 252 165 0 chr1 84781487 84781602 -112413830 - B1_Mur3 SINE Alu -14 135 2 5 1231 263 271 102 95 chr1 84781602 84781662 -112413770 - MT2B2 LTR ERVL -413 171 111 5 1231 556 214 71 0 chr1 84782076 84782188 -112413244 + B1_Mur3 SINE Alu 2 121 -28 5 1231 306 0 0 0 chr1 84782191 84782225 -112413207 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1231 277 280 22 4 chr1 84782338 84782428 -112413004 + B1F1 SINE Alu 2 93 -56 5 1231 23 0 0 0 chr1 84783214 84783237 -112412195 + AT_rich Low_complexity Low_complexity 1 23 0 5 1231 231 111 87 22 chr1 84783463 84783509 -112411923 - B1_Mus1 SINE Alu -75 73 25 5 1231 300 241 56 45 chr1 84783600 84783688 -112411744 - B1_Mus1 SINE Alu -13 107 6 5 1231 1050 52 15 0 chr1 84783722 84783856 -112411576 - B1_Mus2 SINE Alu -11 136 1 5 1231 353 221 79 116 chr1 84783967 84784182 -112411250 + B3 SINE B2 1 207 -9 5 1231 415 178 165 19 chr1 84784491 84784594 -112410838 - PB1D9 SINE Alu -2 118 1 5 1231 24 32 0 0 chr1 84784712 84784743 -112410689 + AT_rich Low_complexity Low_complexity 1 31 0 5 1231 277 232 29 0 chr1 84784845 84784914 -112410518 + ID_B1 SINE B4 148 218 -6 5 1231 1044 60 0 0 chr1 84784917 84785051 -112410381 + B1_Mus2 SINE Alu 1 134 -13 5 1231 674 179 34 27 chr1 84785178 84785327 -112410105 + B1_Mur4 SINE Alu 1 150 0 5 1231 198 174 0 0 chr1 84785514 84785560 -112409872 + A-rich Low_complexity Low_complexity 1 46 0 5 1231 1001 97 83 13 chr1 84785568 84785725 -112409707 + B2_Mm2 SINE B2 1 168 -27 5 1231 252 122 0 0 chr1 84785816 84785857 -112409575 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 1231 240 413 0 0 chr1 84785913 84785988 -112409444 + ID4_ SINE ID 2 76 -7 5 1231 384 22 0 0 chr1 84785988 84786033 -112409399 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1231 249 182 0 0 chr1 84786146 84786190 -112409242 + ORR1B1 LTR MaLR 3 46 -321 5 1231 342 185 144 52 chr1 84786178 84786275 -112409157 + B2_Mm2 SINE B2 75 180 -15 5 1231 764 189 21 7 chr1 84786295 84786439 -112408993 + ORR1B1 LTR MaLR 249 394 0 5 1231 286 279 0 0 chr1 84786855 84786916 -112408516 + MIRm SINE MIR 45 105 -171 5 1231 579 246 80 0 chr1 84787057 84787195 -112408237 + B1_Mur2 SINE Alu 1 149 0 5 1231 724 43 0 0 chr1 84787207 84787300 -112408132 + B1_Mm SINE Alu 41 133 -14 5 1231 370 273 61 0 chr1 84787335 84787434 -112407998 + B3 SINE B2 103 207 -9 5 1231 1150 61 0 0 chr1 84787460 84787607 -112407825 + B1_Mus1 SINE Alu 1 147 -1 5 1231 284 333 52 52 chr1 84787637 84787711 -112407721 + ID_B1 SINE B4 85 163 -61 5 1231 711 167 286 0 chr1 84787711 84787879 -112407553 + B3 SINE B2 1 216 0 5 1231 284 333 52 52 chr1 84787879 84787940 -112407492 + ID_B1 SINE B4 164 219 -5 5 1231 544 275 78 0 chr1 84788620 84788762 -112406670 + RSINE1 SINE B4 3 155 -10 5 1231 1135 104 40 11 chr1 84788958 84789133 -112406299 + B2_Mm2 SINE B2 2 181 -14 5 1231 731 190 21 14 chr1 84789252 84789396 -112406036 + B1_Mur4 SINE Alu 2 146 -4 5 1231 180 0 0 0 chr1 84789606 84789626 -112405806 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1231 336 328 8 0 chr1 84791134 84791253 -112404179 - ID_B1 SINE B4 -21 203 84 5 1231 727 249 77 44 chr1 84791499 84791680 -112403752 + B3A SINE B2 5 191 -7 5 1231 786 253 0 13 chr1 84791778 84791930 -112403502 + B3A SINE B2 26 175 -23 5 1231 378 91 0 0 chr1 84791933 84791988 -112403444 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1231 233 109 22 0 chr1 84791988 84792034 -112403398 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1231 251 231 147 59 chr1 84792720 84792890 -112402542 + L1MA6 LINE L1 6086 6270 -30 5 1231 269 232 0 104 chr1 84792949 84793026 -112402406 + ID4_ SINE ID 5 73 -10 5 1231 228 271 50 17 chr1 84793065 84793125 -112402307 + ID4_ SINE ID 12 73 -10 5 1231 853 75 103 15 chr1 84793606 84793742 -112401690 + B1_Mus1 SINE Alu 1 148 0 5 1231 503 242 82 15 chr1 84793773 84793907 -112401525 + B1_Mur3 SINE Alu 1 143 -6 5 1231 564 233 239 0 chr1 84794008 84794188 -112401244 + B4A SINE B4 3 225 -67 5 1231 331 228 219 0 chr1 84794227 84794341 -112401091 + B1_Mur1 SINE Alu 4 142 -7 5 1231 292 310 43 18 chr1 84794383 84794489 -112400943 + B1_Mur3 SINE Alu 12 116 -4 5 1231 1060 86 0 0 chr1 84794493 84794632 -112400800 + B1_Mm SINE Alu 1 139 -8 5 1231 207 162 0 0 chr1 84794646 84794683 -112400749 + A-rich Low_complexity Low_complexity 4 40 0 5 1231 21 36 0 0 chr1 84794750 84794778 -112400654 + AT_rich Low_complexity Low_complexity 1 28 0 5 1231 926 201 107 66 chr1 84794850 84795189 -112400243 + RLTR33 LTR ERVK 185 582 -96 5 1231 427 288 50 88 chr1 84795633 84795793 -112399639 + RSINE1 SINE B4 1 154 -11 5 1231 1198 61 0 0 chr1 84796172 84796319 -112399113 + B1_Mm SINE Alu 1 147 0 5 1231 285 277 15 15 chr1 84796446 84796512 -112398920 + BC1_Mm scRNA scRNA 6 71 -81 5 1231 391 140 0 17 chr1 84796457 84796515 -112398917 + tRNA-Ala-GCY_ tRNA tRNA 12 68 -7 5 1231 225 26 24 71 chr1 84796593 84796635 -112398797 + B1_Mur4 SINE Alu 111 150 0 5 1231 198 103 0 0 chr1 84796641 84796670 -112398762 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1231 243 291 51 0 chr1 84797026 84797105 -112398327 + ID4_ SINE ID 1 83 0 5 1231 760 170 6 6 chr1 84797105 84797265 -112398167 + GA-rich Low_complexity Low_complexity 4 163 0 5 1231 327 218 172 0 chr1 84797663 84797750 -112397682 + PB1D9 SINE Alu 1 102 -18 5 1231 23 0 0 0 chr1 84798454 84798477 -112396955 + AT_rich Low_complexity Low_complexity 1 23 0 5 1231 497 239 136 30 chr1 84798624 84798810 -112396622 + B3 SINE B2 1 193 -2 5 1231 600 226 35 35 chr1 84798839 84798981 -112396451 + B1_Mur3 SINE Alu 2 143 -6 5 1231 267 295 20 40 chr1 84799697 84799796 -112395636 + ID_B1 SINE B4 124 220 -4 5 1231 549 0 0 0 chr1 84799906 84799967 -112395465 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1231 309 82 0 0 chr1 84800066 84800115 -112395317 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 5 1231 24 0 0 0 chr1 84800117 84800141 -112395291 + GC_rich Low_complexity Low_complexity 1 24 0 5 1231 2572 186 218 13 chr1 84800503 84801140 -112394292 + RMER21B LTR ERV1 75 842 0 5 1231 249 359 47 37 chr1 84801412 84801519 -112393913 - PB1D10 SINE Alu -7 110 3 5 1231 507 316 24 54 chr1 84801846 84802013 -112393419 + RSINE1 SINE B4 2 163 -2 5 1231 420 294 59 103 chr1 84802496 84802769 -112392663 - MTEb LTR MaLR -24 355 95 5 1231 2607 40 6 0 chr1 84802864 84803187 -112392245 - L1Md_A LINE L1 -1 6581 6257 5 1231 271 338 0 49 chr1 84803308 84803389 -112392043 + ID4_ SINE ID 1 77 -6 5 1231 21 0 0 0 chr1 84803390 84803411 -112392021 + AT_rich Low_complexity Low_complexity 1 21 0 5 1232 361 27 24 85 chr1 84804056 84804084 -112391348 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1232 1197 62 0 0 chr1 84804084 84804230 -112391202 + B1_Mus2 SINE Alu 2 147 0 5 1232 361 27 24 85 chr1 84804230 84804283 -112391149 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1232 23 54 0 0 chr1 84804299 84804336 -112391096 + AT_rich Low_complexity Low_complexity 1 37 0 5 1232 267 288 14 0 chr1 84804700 84804773 -112390659 + ID4_ SINE ID 2 75 -8 5 1232 192 77 0 0 chr1 84805023 84805049 -112390383 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1232 660 255 46 20 chr1 84805817 84806013 -112389419 + B3 SINE B2 1 201 -15 5 1232 597 158 78 9 chr1 84806310 84806425 -112389007 + B1_Mur4 SINE Alu 7 129 -21 5 1232 526 152 152 0 chr1 84806852 84806951 -112388481 + B1_Mur3 SINE Alu 27 140 -9 5 1232 269 26 26 0 chr1 84806951 84806989 -112388443 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1232 207 0 0 0 chr1 84806992 84807015 -112388417 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1232 23 0 0 0 chr1 84807378 84807401 -112388031 + AT_rich Low_complexity Low_complexity 1 23 0 5 1232 2094 117 105 11 chr1 84807522 84807893 -112387539 + Lx2 LINE L1 6591 6996 -1 5 1232 236 54 0 51 chr1 84807897 84807936 -112387496 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1232 613 246 58 32 chr1 84808248 84808422 -112387010 + B3 SINE B2 37 193 -2 5 1232 511 162 162 0 chr1 84808445 84808544 -112386888 + B3 SINE B2 1 115 -101 5 1232 30 59 0 0 chr1 84808560 84808611 -112386821 + AT_rich Low_complexity Low_complexity 1 51 0 5 1232 342 381 6 72 chr1 84808918 84809046 -112386386 + RSINE1 SINE B4 2 124 -41 5 1232 636 97 0 0 chr1 84809046 84809139 -112386293 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1232 342 381 6 72 chr1 84809139 84809177 -112386255 + RSINE1 SINE B4 125 157 -8 5 1232 22 0 0 0 chr1 84809193 84809215 -112386217 + AT_rich Low_complexity Low_complexity 1 22 0 5 1232 287 318 62 16 chr1 84809320 84809448 -112385984 - B1F SINE Alu -11 138 5 5 1232 713 192 76 15 chr1 84809933 84810065 -112385367 + B1_Mus1 SINE Alu 1 140 -8 5 1232 1158 56 0 0 chr1 84810904 84811048 -112384384 + B1_Mus2 SINE Alu 2 145 -2 5 1232 339 25 0 0 chr1 84811357 84811397 -112384035 + (CATA)n Simple_repeat Simple_repeat 2 41 0 5 1232 633 241 126 14 chr1 84811667 84811810 -112383622 + B3 SINE B2 1 159 -57 5 1232 465 273 128 14 chr1 84811826 84811967 -112383465 + RSINE1 SINE B4 1 157 -8 5 1232 374 324 18 9 chr1 84812228 84812337 -112383095 + B3A SINE B2 2 111 -87 5 1232 348 316 142 23 chr1 84812537 84812754 -112382678 - ID_B1 SINE B4 -46 246 1 6 1232 839 63 165 0 chr1 84812944 84813071 -112382361 + B1_Mus1 SINE Alu 1 148 0 6 1232 789 256 17 20 chr1 84813300 84813489 -112381943 + B3 SINE B2 2 205 -11 6 1232 21 0 0 0 chr1 84813506 84813527 -112381905 + AT_rich Low_complexity Low_complexity 1 21 0 6 1232 532 273 96 13 chr1 84813592 84813741 -112381691 + B4A SINE B4 81 236 -56 6 1232 1187 84 78 6 chr1 84813741 84813920 -112381512 + B2_Mm2 SINE B2 1 192 -3 6 1232 532 248 126 15 chr1 84813920 84813945 -112381487 + B4A SINE B4 237 271 -21 6 1232 316 287 81 0 chr1 84813923 84814010 -112381422 + B3 SINE B2 120 213 -3 5 1232 414 306 113 0 chr1 84814080 84814204 -112381228 + B1_Mus2 SINE Alu 10 147 0 6 1232 527 228 90 143 chr1 84814719 84814908 -112380524 - B3 SINE B2 -9 207 29 6 1232 760 144 16 16 chr1 84814918 84815045 -112380387 + B1_Mur3 SINE Alu 9 135 -14 6 1232 1602 37 5 0 chr1 84815045 84815236 -112380196 + B2_Mm1t SINE B2 2 193 0 6 1232 314 264 81 0 chr1 84815420 84815507 -112379925 + PB1D7 SINE Alu 18 111 -9 6 1232 510 194 83 9 chr1 84815580 84815689 -112379743 + B1_Mur4 SINE Alu 33 149 -1 6 1232 1222 67 43 0 chr1 84815872 84816036 -112379396 - B2_Mm2 SINE B2 -5 190 20 6 1232 192 82 0 109 chr1 84816185 84816240 -112379192 + CT-rich Low_complexity Low_complexity 5 53 0 6 1232 530 213 66 0 chr1 84816323 84816445 -112378987 + B1_Mus2 SINE Alu 3 132 -15 6 1232 198 0 0 0 chr1 84816449 84816471 -112378961 + (G)n Simple_repeat Simple_repeat 1 22 0 6 1232 21 36 0 0 chr1 84816555 84816583 -112378849 + AT_rich Low_complexity Low_complexity 1 28 0 6 1232 1378 50 78 0 chr1 84816794 84816954 -112378478 + B2_Mm1t SINE B2 1 160 -33 6 1232 243 0 0 0 chr1 84816954 84816981 -112378451 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1232 1378 50 78 0 chr1 84816981 84816999 -112378433 + B2_Mm1t SINE B2 161 191 -2 6 1232 308 347 31 0 chr1 84817437 84817535 -112377897 - PB1D7 SINE Alu -14 106 6 6 1232 339 165 166 0 chr1 84817714 84817797 -112377635 + B1_Mus2 SINE Alu 21 116 -4 6 1232 318 298 29 117 chr1 84817931 84818068 -112377364 + RSINE1 SINE B4 12 136 -29 6 1232 1162 35 0 14 chr1 84818106 84818250 -112377182 - B1_Mm SINE Alu -4 143 2 6 1232 221 188 41 20 chr1 84818833 84818882 -112376550 + PB1D9 SINE Alu 22 71 -49 6 1232 621 0 0 0 chr1 84819293 84819362 -112376070 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 6 1232 997 126 37 70 chr1 84819573 84819683 -112375749 + URR1B DNA MER1_type 45 157 -68 6 1232 873 160 118 0 chr1 84819683 84819852 -112375580 + B2_Mm2 SINE B2 1 189 -6 6 1232 997 126 37 70 chr1 84819852 84819928 -112375504 + URR1B DNA MER1_type 158 225 0 6 1232 873 249 14 23 chr1 84820156 84820370 -112375062 + B3 SINE B2 1 212 -4 6 1232 245 333 0 108 chr1 84820375 84820388 -112375044 + ID_B1 SINE B4 79 177 -47 6 1232 308 186 31 122 chr1 84820388 84820486 -112374946 + MT2B LTR ERVL 164 252 -349 6 1232 499 223 39 0 chr1 84820402 84820505 -112374927 + PB1D9 SINE Alu 14 120 0 6 1232 479 202 98 27 chr1 84820514 84820626 -112374806 + RSINE1 SINE B4 2 121 -44 6 1232 294 292 96 17 chr1 84821150 84821265 -112374167 - MIRb SINE MIR -104 164 41 6 1232 997 55 0 0 chr1 84821566 84821694 -112373738 + B1_Mm SINE Alu 20 147 0 6 1232 1201 65 0 0 chr1 84822371 84822524 -112372908 + B2_Mm2 SINE B2 2 154 -41 6 1232 747 0 0 0 chr1 84822526 84822609 -112372823 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1232 330 217 129 79 chr1 84822694 84822834 -112372598 + B1_Mus1 SINE Alu 1 147 -1 6 1232 224 309 38 113 chr1 84822900 84823006 -112372426 + PB1D9 SINE Alu 2 99 -21 6 1232 243 0 0 0 chr1 84823006 84823033 -112372399 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1232 351 281 0 35 chr1 84823296 84823381 -112372051 - B1F2 SINE Alu -44 105 24 6 1232 180 0 0 0 chr1 84823824 84823844 -112371588 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1232 33 66 0 0 chr1 84823846 84823907 -112371525 + AT_rich Low_complexity Low_complexity 1 61 0 6 1232 1127 75 0 0 chr1 84823951 84824098 -112371334 + B1_Mus1 SINE Alu 2 148 0 6 1232 520 161 231 25 chr1 84824115 84824236 -112371196 - URR1A DNA MER1_type -71 155 10 6 1232 307 229 2 0 chr1 84824244 84824310 -112371122 - ORR1D1 LTR MaLR -315 79 13 6 1232 429 289 26 0 chr1 84824396 84824510 -112370922 + PB1 SINE Alu 3 119 -8 6 1232 1189 112 32 0 chr1 84824602 84824789 -112370643 + B2_Mm1t SINE B2 1 193 0 6 1232 1099 55 7 7 chr1 84824794 84824941 -112370491 + B1_Mus2 SINE Alu 1 147 0 6 1232 1171 54 0 0 chr1 84825139 84825286 -112370146 - B1_Mus2 SINE Alu 0 147 1 6 1232 574 199 126 60 chr1 84825400 84825582 -112369850 + B3A SINE B2 5 198 0 6 1232 1008 115 0 7 chr1 84825646 84825795 -112369637 - B1_Mus1 SINE Alu 0 148 1 6 1232 21 0 0 0 chr1 84825862 84825883 -112369549 + AT_rich Low_complexity Low_complexity 1 21 0 6 1232 252 188 154 15 chr1 84825967 84826032 -112369400 + B1_Mus2 SINE Alu 74 147 0 6 1232 430 259 95 15 chr1 84826013 84826150 -112369282 - B3A SINE B2 -48 150 3 6 1232 592 209 96 29 chr1 84826236 84826416 -112369016 - B3 SINE B2 -2 193 2 6 1232 439 266 55 0 chr1 84826497 84826606 -112368826 + B3 SINE B2 2 116 -100 6 1232 434 245 21 0 chr1 84826635 84826729 -112368703 - B1F SINE Alu -3 146 51 6 1232 1145 34 7 14 chr1 84826730 84826878 -112368554 + B1_Mus2 SINE Alu 1 147 0 6 1232 552 211 128 40 chr1 84827254 84827402 -112368030 + ID_B1 SINE B4 2 162 -62 6 1232 263 50 50 0 chr1 84827411 84827451 -112367981 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6 1232 357 223 116 11 chr1 84827451 84827546 -112367886 + ID_B1 SINE B4 102 206 -18 6 1232 287 246 107 66 chr1 84827661 84827678 -112367754 + MT2B2 LTR ERVL 150 208 -376 6 1232 361 233 68 23 chr1 84827678 84827766 -112367666 + B1_Mur2 SINE Alu 1 92 -57 6 1232 287 246 107 66 chr1 84827766 84827783 -112367649 + MT2B2 LTR ERVL 209 276 -308 6 1232 274 289 65 26 chr1 84827795 84827899 -112367533 + B1F1 SINE Alu 10 109 -8 6 1232 533 230 72 29 chr1 84828012 84828151 -112367281 + B1_Mur4 SINE Alu 5 149 -1 6 1232 290 185 14 122 chr1 84828168 84828242 -112367190 + BC1_Mm scRNA scRNA 11 76 -76 6 1232 1400 89 5 16 chr1 84828474 84828668 -112366764 + B2_Mm1t SINE B2 1 192 -1 6 1232 25 0 0 0 chr1 84829455 84829480 -112365952 + AT_rich Low_complexity Low_complexity 1 25 0 6 1232 21 0 0 0 chr1 84829702 84829723 -112365709 + AT_rich Low_complexity Low_complexity 1 21 0 6 1232 546 176 0 0 chr1 84829729 84829820 -112365612 + B2_Mm2 SINE B2 1 91 -104 6 1232 36 0 0 0 chr1 84829833 84829869 -112365563 + AT_rich Low_complexity Low_complexity 1 36 0 6 1232 588 206 93 22 chr1 84829877 84830016 -112365416 + B1_Mur4 SINE Alu 2 150 0 6 1232 491 202 149 0 chr1 84830226 84830340 -112365092 - B1_Mur2 SINE Alu -18 131 1 6 1232 255 61 0 0 chr1 84830394 84830427 -112365005 + (TGG)n Simple_repeat Simple_repeat 3 35 0 6 1232 216 186 116 0 chr1 84830429 84830472 -112364960 + B1F2 SINE Alu 15 62 -87 6 1232 1036 88 0 26 chr1 84830856 84831008 -112364424 + B2_Mm2 SINE B2 3 150 -45 6 1232 1221 48 0 0 chr1 84831048 84831195 -112364237 + B1_Mm SINE Alu 1 147 0 6 1232 214 250 49 16 chr1 84831407 84831468 -112363964 + B4A SINE B4 84 146 -146 6 1232 380 242 41 21 chr1 84831416 84831513 -112363919 + PB1D10 SINE Alu 12 110 -7 6 1232 945 190 58 24 chr1 84831779 84831984 -112363448 + B3 SINE B2 5 216 0 6 1232 1230 81 35 6 chr1 84832145 84832318 -112363114 + B2_Mm2 SINE B2 1 178 -17 6 1232 273 29 0 0 chr1 84832541 84832575 -112362857 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1232 968 191 79 11 chr1 84832640 84832830 -112362602 + B3 SINE B2 7 209 -7 6 1232 291 149 162 0 chr1 84832935 84833009 -112362423 + MT2B LTR ERVL 166 251 -350 6 1232 348 193 196 43 chr1 84832945 84833037 -112362395 + PB1D9 SINE Alu 14 119 -1 6 1232 212 59 29 0 chr1 84834414 84834448 -112360984 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 6 1232 180 111 0 0 chr1 84835115 84835142 -112360290 + (CTCGG)n Simple_repeat Simple_repeat 2 28 0 6 1232 225 0 0 0 chr1 84835643 84835668 -112359764 + (CAGC)n Simple_repeat Simple_repeat 3 27 0 6 1232 508 183 31 70 chr1 84837710 84837839 -112357593 - B1_Mur1 SINE Alu 0 149 26 6 1232 351 0 0 0 chr1 84837970 84838009 -112357423 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1232 330 280 43 0 chr1 84838344 84838437 -112356995 - PB1D10 SINE Alu 0 117 21 6 1232 212 298 22 56 chr1 84838379 84838468 -112356964 + B1_Mur2 SINE Alu 57 142 -7 6 1232 1189 66 54 12 chr1 84838473 84838641 -112356791 - B2_Mm2 SINE B2 -6 189 15 6 1232 1356 74 21 26 chr1 84838809 84839002 -112356430 - B2_Mm1t SINE B2 0 193 2 6 1232 338 222 152 36 chr1 84839154 84839266 -112356166 + B4 SINE B4 55 179 -113 6 1232 526 107 91 0 chr1 84839192 84839279 -112356153 + B1_Mur4 SINE Alu 10 105 -15 6 1232 380 202 28 138 chr1 84839193 84839290 -112356142 + MT2B LTR ERVL 175 259 -342 6 1232 248 252 241 43 chr1 84839290 84839406 -112356026 + B1F2 SINE Alu 3 141 -8 6 1232 231 36 0 0 chr1 84839406 84839434 -112355998 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1232 431 242 110 90 chr1 84839455 84839600 -112355832 + RSINE1 SINE B4 18 165 0 6 1232 225 288 77 51 chr1 84839671 84839788 -112355644 + Charlie12 DNA MER1_type 1238 1357 -1516 7 1232 805 149 43 36 chr1 84839794 84839933 -112355499 + B1_Mus1 SINE Alu 7 146 -2 7 1232 403 295 0 19 chr1 84839953 84840060 -112355372 + ID_B1 SINE B4 96 200 -24 7 1232 680 288 19 19 chr1 84840053 84840209 -112355223 + RSINE1 SINE B4 10 165 0 7 1232 240 342 20 81 chr1 84840055 84840252 -112355180 + B2_Mm2 SINE B2 11 195 0 7 1232 445 236 47 9 chr1 84840345 84840452 -112354980 - B1_Mur4 SINE Alu -13 137 27 7 1232 21 0 0 0 chr1 84840474 84840495 -112354937 + AT_rich Low_complexity Low_complexity 1 21 0 7 1232 24 32 0 0 chr1 84840545 84840576 -112354856 + AT_rich Low_complexity Low_complexity 1 31 0 7 1232 201 327 196 0 chr1 84840774 84840881 -112354551 - L2a LINE L2 -17 3409 3282 7 1232 461 227 52 0 chr1 84840896 84840993 -112354439 - PB1D10 SINE Alu -1 116 15 7 1232 791 271 31 0 chr1 84841234 84841426 -112354006 + B3 SINE B2 19 216 0 7 1232 734 102 46 9 chr1 84841449 84841558 -112353874 - B1_Mur2 SINE Alu -11 138 26 7 1232 355 243 162 4 chr1 84841575 84841661 -112353771 - B3A SINE B2 -75 120 27 7 1232 871 123 65 0 chr1 84841656 84841794 -112353638 - B1_Mus2 SINE Alu 0 147 1 7 1232 539 244 47 8 chr1 84841680 84841808 -112353624 - B4 SINE B4 -87 205 73 7 1232 216 0 0 0 chr1 84841812 84841836 -112353596 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1232 223 361 0 14 chr1 84841888 84841961 -112353471 + B4 SINE B4 83 154 -138 7 1232 434 239 285 12 chr1 84842215 84842380 -112353052 + ID_B1 SINE B4 5 214 -10 7 1232 362 294 45 77 chr1 84843554 84843709 -112351723 + MIR3 SINE MIR 23 172 -36 7 1232 1188 75 0 0 chr1 84844085 84844232 -112351200 + B1_Mus2 SINE Alu 1 147 0 7 1232 348 136 28 70 chr1 84844710 84844781 -112350651 + B1F SINE Alu 82 149 0 7 1232 653 239 15 0 chr1 84844803 84844933 -112350499 + ID_B1 SINE B4 86 217 -7 7 1232 377 134 258 0 chr1 84845488 84845585 -112349847 + B1_Mur3 SINE Alu 11 132 -17 7 1232 1178 35 14 0 chr1 84846253 84846398 -112349034 + B1_Mm SINE Alu 1 147 0 7 1232 744 229 158 30 chr1 84846425 84846686 -112348746 - ORR1D1 LTR MaLR -6 368 74 7 1232 662 186 169 90 chr1 84846686 84846739 -112348693 - URR1A DNA MER1_type 0 226 176 7 1232 1136 82 0 0 chr1 84846739 84846886 -112348546 + B1_Mus1 SINE Alu 2 148 0 7 1232 662 186 169 90 chr1 84846886 84847033 -112348399 - URR1A DNA MER1_type -51 175 10 7 1232 384 298 50 50 chr1 84846961 84847120 -112348312 - ORR1D1 LTR MaLR -215 159 1 7 1232 694 185 0 0 chr1 84847481 84847600 -112347832 + B1_Mur3 SINE Alu 31 149 0 7 1232 528 315 70 10 chr1 84847609 84847808 -112347624 + B4A SINE B4 1 211 -81 7 1232 263 219 111 30 chr1 84847921 84848020 -112347412 - PB1D10 SINE Alu -1 116 10 7 1232 462 321 85 5 chr1 84848030 84848218 -112347214 - MER82 DNA MER2_type -442 211 9 7 1232 324 143 0 0 chr1 84849395 84849465 -112345967 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1232 22 0 0 0 chr1 84849465 84849487 -112345945 + AT_rich Low_complexity Low_complexity 1 22 0 7 1232 569 221 32 16 chr1 84849516 84849640 -112345792 + RSINE1 SINE B4 35 160 -5 7 1232 215 271 164 41 chr1 84849701 84849774 -112345658 + PB1D10 SINE Alu 33 114 -3 7 1232 1190 180 0 29 chr1 84849793 84849999 -112345433 + B3 SINE B2 3 202 -14 7 1232 300 260 362 16 chr1 84850028 84850155 -112345277 + B3A SINE B2 25 195 -3 7 1232 777 206 0 28 chr1 84850168 84850313 -112345119 + B1_Mur1 SINE Alu 4 144 -5 7 1232 729 247 23 6 chr1 84850370 84850545 -112344887 + B3A SINE B2 3 180 -18 7 1232 451 214 47 37 chr1 84850594 84850701 -112344731 - PB1D9 SINE Alu 0 120 13 7 1232 981 92 0 0 chr1 84850702 84850832 -112344600 + B2_Mm2 SINE B2 3 132 -63 7 1232 404 263 82 131 chr1 84850914 84851120 -112344312 + B3A SINE B2 1 196 -2 7 1232 487 230 34 83 chr1 84851147 84851351 -112344081 + B3A SINE B2 2 195 -3 7 1232 770 197 7 0 chr1 84851988 84852130 -112343302 - B1_Mus1 SINE Alu 0 148 6 7 1232 443 265 10 10 chr1 84852422 84852525 -112342907 - RSINE1 SINE B4 -62 103 1 7 1232 760 175 14 7 chr1 84853166 84853304 -112342128 + B1_Mur4 SINE Alu 5 143 -7 7 1232 265 338 33 72 chr1 84853174 84853327 -112342105 + B4 SINE B4 96 242 -50 7 1232 761 74 34 19 chr1 84853327 84853459 -112341973 + B1_Mus2 SINE Alu 11 149 0 7 1232 1081 86 0 0 chr1 84853496 84853636 -112341796 + B1_Mm SINE Alu 2 141 -6 7 1232 183 42 0 0 chr1 84853637 84853661 -112341771 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7 1232 395 145 0 0 chr1 84853670 84853734 -112341698 + B3 SINE B2 69 132 -66 7 1232 237 222 0 0 chr1 84853915 84853960 -112341472 + ID4_ SINE ID 9 53 -30 7 1232 1124 70 28 0 chr1 84853981 84854124 -112341308 + B1_Mus1 SINE Alu 2 148 0 7 1232 23 0 0 0 chr1 84854721 84854744 -112340688 + AT_rich Low_complexity Low_complexity 1 23 0 7 1232 590 281 23 0 chr1 84854778 84854906 -112340526 - RSINE1 SINE B4 -23 142 12 7 1232 1194 34 0 14 chr1 84854925 84855073 -112340359 - B1_Mus2 SINE Alu 0 147 2 7 1232 286 158 33 66 chr1 84855179 84855240 -112340192 - B1_Mm SINE Alu 0 147 89 7 1232 32 0 0 0 chr1 84855247 84855279 -112340153 + AT_rich Low_complexity Low_complexity 1 32 0 7 1232 287 257 0 54 chr1 84856241 84856315 -112339117 - ID4_ SINE ID -12 71 2 7 1232 429 216 97 130 chr1 84856347 84856501 -112338931 + B1_Mur3 SINE Alu 1 149 0 7 1232 229 211 0 37 chr1 84856501 84856555 -112338877 + PB1D7 SINE Alu 68 119 -1 7 1232 1222 61 0 0 chr1 84856558 84856705 -112338727 + B1_Mus2 SINE Alu 1 147 0 7 1232 22 35 0 0 chr1 84856750 84856779 -112338653 + AT_rich Low_complexity Low_complexity 1 29 0 7 1232 592 273 26 7 chr1 84857383 84857534 -112337898 + ID_B1 SINE B4 8 161 -63 7 1232 243 143 0 0 chr1 84857674 84857709 -112337723 + B3 SINE B2 83 117 -99 7 1232 23 33 0 0 chr1 84858213 84858243 -112337189 + AT_rich Low_complexity Low_complexity 1 30 0 7 1232 478 235 0 63 chr1 84858338 84858465 -112336967 + PB1D7 SINE Alu 1 119 -1 7 1232 1153 75 0 20 chr1 84858656 84858806 -112336626 - B1_Mus2 SINE Alu 0 147 1 7 1232 526 213 0 53 chr1 84859214 84859328 -112336104 - B3 SINE B2 -102 114 7 7 1232 730 278 65 30 chr1 84859363 84859563 -112335869 - B3 SINE B2 0 216 10 7 1232 250 276 107 59 chr1 84860435 84860553 -112334879 + B1F1 SINE Alu 17 139 -10 7 1232 577 297 61 15 chr1 84860598 84860796 -112334636 - B3 SINE B2 -7 209 3 7 1232 321 212 169 42 chr1 84861236 84861354 -112334078 - RSINE1 SINE B4 -31 134 2 7 1232 408 283 0 0 chr1 84861357 84861456 -112333976 - ID_B1 SINE B4 -13 211 113 7 1232 211 154 128 0 chr1 84861540 84861579 -112333853 - B1_Mur4 SINE Alu -9 141 98 7 1232 1013 39 8 8 chr1 84861852 84861980 -112333452 + B1_Mm SINE Alu 20 147 0 7 1232 200 111 0 27 chr1 84861983 84861993 -112333439 + (CAAA)n Simple_repeat Simple_repeat 4 13 0 7 1232 1570 23 0 0 chr1 84861993 84862167 -112333265 + B2_Mm1a SINE B2 2 175 -18 7 1232 200 111 0 27 chr1 84862167 84862193 -112333239 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1232 1002 62 0 0 chr1 84862279 84862409 -112333023 + (TG)n Simple_repeat Simple_repeat 1 130 0 7 1232 211 125 50 0 chr1 84862504 84862544 -112332888 - L2 LINE L2 -1052 2367 2326 7 1232 1509 87 0 0 chr1 84862639 84862834 -112332598 + B2_Mm2 SINE B2 1 195 0 7 1232 310 279 50 132 chr1 84863089 84863329 -112332103 - MT2B LTR ERVL -173 411 175 7 1232 799 139 14 55 chr1 84863193 84863338 -112332094 - B1_Mur3 SINE Alu -9 140 2 7 1232 367 193 167 12 chr1 84863535 84863619 -112331813 + PB1D7 SINE Alu 2 98 -22 7 1232 288 308 104 19 chr1 84863536 84863642 -112331790 + ID_B1 SINE B4 84 198 -26 7 1232 605 234 130 42 chr1 84863755 84863947 -112331485 + ID_B1 SINE B4 3 211 -13 7 1232 847 153 35 0 chr1 84864048 84864192 -112331240 - B1_Mur4 SINE Alu -1 149 1 7 1232 325 301 9 88 chr1 84864194 84864307 -112331125 - PB1D9 SINE Alu -1 119 16 7 1232 1216 54 0 0 chr1 84864341 84864488 -112330944 - B1_Mm SINE Alu 0 147 1 7 1232 201 39 0 0 chr1 84864696 84864722 -112330710 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 7 1232 292 292 40 17 chr1 84864722 84864851 -112330581 - ID4_ SINE ID -18 134 2 7 1232 1344 66 66 0 chr1 84864869 84865051 -112330381 - B2_Mm2 SINE B2 -1 194 1 7 1232 263 213 0 76 chr1 84865057 84865123 -112330309 - PB1D10 SINE Alu -17 100 40 7 1232 332 267 28 19 chr1 84865774 84865881 -112329551 + RMER15 LTR ERVL 388 495 -80 7 1232 532 189 113 0 chr1 84866896 84867002 -112328430 - PB1D9 SINE Alu -2 118 1 7 1232 1167 68 0 0 chr1 84867045 84867191 -112328241 + B1_Mus2 SINE Alu 2 147 0 7 1232 216 0 0 0 chr1 84867191 84867215 -112328217 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1232 986 121 7 0 chr1 84867264 84867404 -112328028 - B1_Mus1 SINE Alu -7 141 1 7 1232 293 279 15 0 chr1 84867469 84867537 -112327895 - BC1_Mm scRNA scRNA -83 69 1 8 1232 339 25 0 0 chr1 84867555 84867595 -112327837 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1232 511 274 85 119 chr1 84867640 84867908 -112327524 - RMER10A LTR ERVL -19 423 172 8 1232 333 0 0 0 chr1 84867908 84867945 -112327487 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1232 511 274 85 119 chr1 84867945 84868042 -112327390 - RMER10A LTR ERVL -271 171 76 8 1232 429 36 0 0 chr1 84868042 84868097 -112327335 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1232 511 274 85 119 chr1 84868097 84868141 -112327291 - RMER10A LTR ERVL -367 75 30 8 1232 247 88 0 0 chr1 84868726 84868760 -112326672 + RMER10A LTR ERVL 27 60 -382 8 1232 1214 121 11 0 chr1 84869257 84869439 -112325993 + B2_Mm1t SINE B2 2 185 -8 8 1232 430 231 163 25 chr1 84869497 84869692 -112325740 + B3A SINE B2 3 212 -4 8 1232 279 0 0 0 chr1 84869938 84869969 -112325463 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 8 1232 1190 41 0 58 chr1 84869969 84870124 -112325308 - B1_Mus2 SINE Alu 0 147 2 8 1232 34 42 0 0 chr1 84870132 84870180 -112325252 + AT_rich Low_complexity Low_complexity 1 48 0 8 1232 207 0 0 0 chr1 84870181 84870204 -112325228 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1232 253 188 39 104 chr1 84870264 84870341 -112325091 - B1F SINE Alu 0 149 78 8 1232 354 215 0 15 chr1 84870276 84870342 -112325090 - ID_B1 SINE B4 -5 219 155 8 1232 607 207 41 0 chr1 84870974 84871090 -112324342 + B1_Mur4 SINE Alu 1 121 -29 8 1232 4346 152 92 18 chr1 84871090 84871907 -112323525 + RMER19B LTR ERVK 1 877 -25 8 1232 1269 77 60 22 chr1 84871915 84872100 -112323332 + B2_Mm1t SINE B2 1 192 -1 8 1232 876 97 96 15 chr1 84872106 84872242 -112323190 + B1_Mus1 SINE Alu 2 148 0 8 1232 1381 74 0 6 chr1 84872260 84872437 -112322995 + B2_Mm2 SINE B2 4 179 -16 8 1232 1195 14 0 0 chr1 84872440 84872579 -112322853 + B1_Mus1 SINE Alu 10 148 0 8 1232 21 36 0 0 chr1 84872596 84872624 -112322808 + AT_rich Low_complexity Low_complexity 1 28 0 8 1232 1114 57 43 0 chr1 84872643 84872783 -112322649 + B1_Mm SINE Alu 2 147 0 8 1232 244 204 0 93 chr1 84872835 84872889 -112322543 - PB1D7 SINE Alu -60 60 12 8 1232 489 202 85 0 chr1 84873003 84873097 -112322335 - B1_Mur2 SINE Alu -47 102 1 8 1232 481 341 14 7 chr1 84873097 84873235 -112322197 - ID_B1 SINE B4 -6 218 80 8 1232 1256 89 44 16 chr1 84873251 84873433 -112321999 - B2_Mm2 SINE B2 -7 188 2 8 1232 207 0 0 0 chr1 84873456 84873479 -112321953 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1232 1153 82 0 0 chr1 84873479 84873617 -112321815 - B1_Mus1 SINE Alu -9 139 2 8 1232 550 254 23 0 chr1 84873665 84873795 -112321637 + B1_Mur1 SINE Alu 2 134 -15 8 1232 180 0 0 0 chr1 84873795 84873815 -112321617 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1232 1213 62 0 0 chr1 84873835 84873981 -112321451 + B1_Mus2 SINE Alu 2 147 0 8 1232 180 0 0 0 chr1 84873981 84874001 -112321431 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1232 899 82 131 15 chr1 84874022 84874159 -112321273 + B2_Mm2 SINE B2 4 156 -39 8 1232 674 229 53 21 chr1 84874175 84874362 -112321070 - B3A SINE B2 -5 193 1 8 1232 384 22 0 0 chr1 84874443 84874488 -112320944 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1232 26 30 0 0 chr1 84874615 84874648 -112320784 + AT_rich Low_complexity Low_complexity 1 33 0 8 1232 517 304 20 20 chr1 84874752 84874900 -112320532 + B1F SINE Alu 1 148 -1 8 1232 496 226 96 22 chr1 84874903 84875039 -112320393 + B1_Mus2 SINE Alu 1 146 -1 8 1232 435 207 90 49 chr1 84875063 84875185 -112320247 + ID_B1 SINE B4 98 224 0 8 1232 1085 108 0 0 chr1 84875191 84875339 -112320093 + B1_Mus1 SINE Alu 1 148 0 8 1232 210 325 62 54 chr1 84875363 84875385 -112320047 + B4 SINE B4 64 86 -206 8 1232 467 222 99 43 chr1 84875385 84875498 -112319934 + B1_Mur3 SINE Alu 1 115 -34 8 1232 951 142 0 33 chr1 84875498 84875651 -112319781 + B1_Mur3 SINE Alu 2 149 0 8 1232 467 222 99 43 chr1 84875651 84875678 -112319754 + B1_Mur3 SINE Alu 116 149 0 8 1232 334 215 31 0 chr1 84875869 84875934 -112319498 - ID_B1 SINE B4 -35 189 123 8 1232 23 25 0 24 chr1 84875934 84875953 -112319479 + AT_rich Low_complexity Low_complexity 1 19 0 8 1232 1291 27 0 0 chr1 84875953 84876100 -112319332 - B1_Mus2 SINE Alu 0 147 1 8 1232 23 25 0 24 chr1 84876100 84876121 -112319311 + AT_rich Low_complexity Low_complexity 1 21 0 8 1232 504 96 12 60 chr1 84876132 84876244 -112319188 + B2_Mm1t SINE B2 2 101 -94 8 1232 658 182 64 28 chr1 84876449 84876590 -112318842 - B3 SINE B2 -21 195 50 8 1232 1465 64 37 0 chr1 84876590 84876778 -112318654 + B2_Mm2 SINE B2 1 195 0 8 1232 843 73 186 0 chr1 84876782 84876906 -112318526 + B1_Mus1 SINE Alu 2 148 0 8 1232 23 33 0 0 chr1 84876906 84876936 -112318496 + AT_rich Low_complexity Low_complexity 1 30 0 8 1232 350 172 17 0 chr1 84876939 84876997 -112318435 - B3 SINE B2 -155 61 3 8 1232 1201 41 0 7 chr1 84877022 84877169 -112318263 - B1_Mus2 SINE Alu -1 146 1 8 1232 1285 107 16 11 chr1 84877169 84877357 -112318075 - B2_Mm2 SINE B2 -4 191 2 8 1232 303 233 284 0 chr1 84877388 84877504 -112317928 + B1F SINE Alu 1 149 0 8 1232 181 28 81 27 chr1 84877505 84877542 -112317890 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 8 1232 295 114 0 0 chr1 84877550 84877594 -112317838 + ID_B1 SINE B4 181 224 0 8 1232 754 242 60 25 chr1 84877907 84878105 -112317327 + B3A SINE B2 2 192 -3 8 1232 268 314 103 29 chr1 84878153 84878375 -112317057 - RMER15 LTR ERVL -16 559 294 8 1232 420 160 30 0 chr1 84878405 84878505 -112316927 + GA-rich Low_complexity Low_complexity 2 104 0 8 1232 213 353 58 8 chr1 84878570 84878690 -112316742 + MIR SINE MIR 56 181 -81 8 1232 577 244 61 82 chr1 84879064 84879211 -112316221 - B1_Mus1 SINE Alu -3 145 2 8 1232 407 339 61 8 chr1 84879246 84879377 -112316055 + B3A SINE B2 2 139 -59 8 1232 1032 81 0 0 chr1 84879407 84879568 -112315864 + (CA)n Simple_repeat Simple_repeat 2 162 0 8 1232 615 227 0 32 chr1 84879738 84879861 -112315571 + RSINE1 SINE B4 19 137 -28 8 1232 331 330 135 80 chr1 84879983 84880288 -112315144 + MLT1F LTR MaLR 2 308 -240 8 1232 835 103 68 81 chr1 84880288 84880436 -112314996 - B1_Mus1 SINE Alu -1 147 2 8 1232 331 330 135 80 chr1 84880436 84880529 -112314903 + MLT1F LTR MaLR 309 421 -127 8 1232 590 311 0 0 chr1 84880865 84881013 -112314419 - B1_Mur2 SINE Alu 0 149 2 8 1232 1242 47 0 20 chr1 84881014 84881165 -112314267 + B1_Mus1 SINE Alu 1 148 0 8 1232 180 97 0 0 chr1 84881166 84881197 -112314235 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 8 1232 1317 67 44 6 chr1 84881240 84881420 -112314012 - B2_Mm2 SINE B2 -7 188 2 8 1232 383 241 52 85 chr1 84881425 84881582 -112313850 - B3A SINE B2 0 216 63 8 1232 632 262 44 107 chr1 84881575 84881827 -112313605 + RMER5 LTR ERV1 194 429 -105 8 1232 1163 184 18 28 chr1 84881828 84882046 -112313386 + B3 SINE B2 1 216 0 8 1232 873 109 62 0 chr1 84882063 84882191 -112313241 + B1_Mus2 SINE Alu 12 147 0 8 1232 527 281 82 18 chr1 84882594 84882764 -112312668 + B3 SINE B2 26 206 -10 8 1232 286 217 232 32 chr1 84882793 84882888 -112312544 + PB1D9 SINE Alu 1 114 -6 8 1232 285 51 0 0 chr1 84883076 84883115 -112312317 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1232 1139 29 0 28 chr1 84883115 84883256 -112312176 - B1_Mus2 SINE Alu -9 138 2 8 1232 1365 72 38 11 chr1 84883421 84883604 -112311828 - B2_Mm2 SINE B2 -6 189 2 8 1232 627 188 48 113 chr1 84883980 84884148 -112311284 - RSINE1 SINE B4 0 165 9 8 1232 374 263 53 0 chr1 84884437 84884532 -112310900 + B3 SINE B2 70 169 -47 8 1232 1168 56 7 0 chr1 84884551 84884695 -112310737 - B1_Mus2 SINE Alu -1 146 2 8 1232 212 244 0 0 chr1 84884789 84884830 -112310602 + polypurine Low_complexity Low_complexity 3 43 0 8 1232 643 172 32 18 chr1 84884837 84884974 -112310458 - B1_Mur4 SINE Alu 0 150 14 8 1232 622 172 86 0 chr1 84885444 84885560 -112309872 + B1_Mur4 SINE Alu 11 136 -14 8 1232 249 57 0 0 chr1 84885562 84885597 -112309835 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 8 1232 199 190 17 17 chr1 84885703 84885762 -112309670 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1232 300 285 134 127 chr1 84885775 84885932 -112309500 - RSINE1 SINE B4 -2 163 6 8 1232 649 226 8 8 chr1 84886332 84886466 -112308966 + B1_Mur1 SINE Alu 7 140 -9 8 1232 683 179 44 15 chr1 84887038 84887174 -112308258 - B1_Mur1 SINE Alu -1 148 9 8 1232 642 163 494 21 chr1 84887384 84887616 -112307816 + RMER5 LTR ERV1 13 354 -180 8 1232 2146 146 29 50 chr1 84887639 84888022 -112307410 + RLTR14 LTR ERV1 7 381 -1 8 1232 1128 167 25 10 chr1 84888022 84888203 -112307229 + RMER5 LTR ERV1 351 534 0 8 1232 1294 27 0 0 chr1 84888252 84888399 -112307033 + B1_Mus2 SINE Alu 1 147 0 8 1232 280 192 0 100 chr1 84888479 84888589 -112306843 + G-rich Low_complexity Low_complexity 5 103 0 8 1232 247 267 0 107 chr1 84888853 84888937 -112306495 - ID4_ SINE ID -1 82 8 8 1232 211 129 0 0 chr1 84889855 84889886 -112305546 + B3 SINE B2 2 32 -184 8 1232 1085 43 65 0 chr1 84889938 84890076 -112305356 + B1_Mus2 SINE Alu 1 147 0 8 1232 473 67 159 9 chr1 84890118 84890222 -112305210 - B2_Mm2 SINE B2 -11 184 47 8 1232 1315 90 23 0 chr1 84890250 84890427 -112305005 - B2_Mm2 SINE B2 -14 181 1 8 1232 252 0 0 0 chr1 84890621 84890649 -112304783 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1232 338 326 63 0 chr1 84890800 84890895 -112304537 - ID_B1 SINE B4 0 224 124 9 1232 972 184 92 50 chr1 84890895 84891135 -112304297 - ORR1D1 LTR MaLR 0 374 125 9 1232 417 268 35 28 chr1 84891234 84891376 -112304056 - B1F SINE Alu -5 144 2 9 1232 495 95 0 0 chr1 84891861 84891935 -112303497 + (TATG)n Simple_repeat Simple_repeat 4 77 0 9 1232 282 250 71 48 chr1 84891973 84892023 -112303409 - RSINE1 SINE B4 -77 88 36 9 1232 2069 83 11 126 chr1 84892023 84892395 -112303037 - ORR1A4 LTR MaLR 0 329 1 9 1232 282 250 71 48 chr1 84892395 84892428 -112303004 - RSINE1 SINE B4 -130 35 3 9 1232 720 195 0 8 chr1 84892432 84892561 -112302871 - B1_Mur1 SINE Alu -1 148 21 9 1232 1147 194 10 34 chr1 84893359 84893567 -112301865 - B3 SINE B2 0 216 14 9 1232 1292 111 17 0 chr1 84893567 84893747 -112301685 - B2_Mm2 SINE B2 -10 185 3 9 1232 947 137 6 0 chr1 84893747 84893908 -112301524 + (TC)n Simple_repeat Simple_repeat 2 163 0 9 1232 1064 52 0 0 chr1 84893918 84894052 -112301380 - B1_Mm SINE Alu 0 147 14 9 1232 362 209 42 19 chr1 84894371 84894474 -112300958 - B1_Mm SINE Alu -1 119 19 9 1232 571 263 110 30 chr1 84894539 84894739 -112300693 + B3 SINE B2 1 216 0 9 1232 635 160 9 0 chr1 84894754 84894860 -112300572 - B1_Mus2 SINE Alu 0 147 41 9 1232 1270 104 15 15 chr1 84895008 84895203 -112300229 + B2_Mm2 SINE B2 1 195 0 9 1232 1153 88 0 0 chr1 84895205 84895352 -112300080 + B1_Mus2 SINE Alu 1 147 0 9 1232 186 189 0 0 chr1 84895352 84895389 -112300043 + A-rich Low_complexity Low_complexity 1 37 0 9 1232 288 213 194 15 chr1 84895400 84895501 -112299931 + PB1D10 SINE Alu 1 119 -1 9 1232 846 160 20 27 chr1 84895501 84895649 -112299783 + B1_Mur1 SINE Alu 1 147 -2 9 1232 328 250 13 0 chr1 84895791 84895867 -112299565 - ID_B1 SINE B4 -7 217 141 9 1232 22 0 0 0 chr1 84896141 84896163 -112299269 + AT_rich Low_complexity Low_complexity 1 22 0 9 1232 975 137 132 35 chr1 84896163 84896360 -112299072 - B3 SINE B2 0 216 1 9 1232 257 308 38 13 chr1 84897088 84897167 -112298265 - PB1D7 SINE Alu -17 103 23 9 1232 376 278 121 83 chr1 84897100 84897257 -112298175 - ID_B1 SINE B4 -55 169 7 9 1232 244 235 0 0 chr1 84897741 84897792 -112297640 + ID_B1 SINE B4 159 209 -15 9 1232 852 156 59 0 chr1 84897811 84897946 -112297486 + B1_Mus1 SINE Alu 2 144 -4 9 1232 543 16 0 0 chr1 84897950 84898014 -112297418 + (TAA)n Simple_repeat Simple_repeat 2 65 0 9 1232 695 205 0 43 chr1 84898180 84898318 -112297114 - B3 SINE B2 0 216 85 9 1232 251 281 22 89 chr1 84898563 84898653 -112296779 + RLTR33 LTR ERVK 446 529 -149 9 1232 1231 54 0 0 chr1 84898699 84898847 -112296585 + B1_Mus1 SINE Alu 1 148 0 9 1232 1105 102 11 11 chr1 84898852 84899031 -112296401 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 1232 542 214 4 11 chr1 84899319 84899444 -112295988 - B3 SINE B2 -75 123 2 9 1232 796 203 7 0 chr1 84899596 84899744 -112295688 - B1_Mur4 SINE Alu 0 150 2 9 1232 446 188 104 20 chr1 84899866 84899982 -112295450 + PB1D10 SINE Alu 8 128 -21 9 1232 33 25 0 0 chr1 84900694 84900734 -112294698 + AT_rich Low_complexity Low_complexity 1 40 0 9 1232 796 156 0 16 chr1 84900734 84900858 -112294574 - B1_Mur1 SINE Alu -27 122 1 9 1232 455 100 200 53 chr1 84900930 84901025 -112294407 + PB1D9 SINE Alu 40 149 0 9 1232 316 299 13 13 chr1 84901493 84901571 -112293861 - ID4 SINE ID -4 79 2 9 1232 910 70 78 0 chr1 84901759 84901888 -112293544 + B1_Mm SINE Alu 9 147 0 9 1232 198 0 0 0 chr1 84901888 84901910 -112293522 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1232 1510 38 5 31 chr1 84901945 84902138 -112293294 - B2_Mm2 SINE B2 -7 188 1 9 1232 748 268 17 6 chr1 84902159 84902332 -112293100 - B3A SINE B2 -14 184 10 9 1232 194 0 39 0 chr1 84902440 84902466 -112292966 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1232 539 192 119 30 chr1 84902466 84902600 -112292832 - B1_Mur3 SINE Alu -3 146 1 9 1232 944 192 101 5 chr1 84902928 84903116 -112292316 - B3 SINE B2 -9 207 2 9 1232 352 241 8 8 chr1 84903355 84903472 -112291960 + GA-rich Low_complexity Low_complexity 3 119 0 9 1232 221 0 35 0 chr1 84903484 84903513 -112291919 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 9 1232 491 200 70 0 chr1 84903513 84903613 -112291819 - PB1D10 SINE Alu -10 107 1 9 1232 180 303 14 43 chr1 84903881 84903950 -112291482 - L4 LINE RTE -922 1107 1041 9 1232 401 230 0 0 chr1 84904126 84904200 -112291232 + ID4 SINE ID 2 75 -8 9 1232 387 237 51 26 chr1 84904292 84904409 -112291023 - PB1D9 SINE Alu 0 120 1 9 1232 348 229 67 121 chr1 84904463 84904599 -112290833 - RSINE1 SINE B4 -10 155 27 9 1232 3112 61 18 20 chr1 84904599 84905000 -112290432 + MTB LTR MaLR 1 400 0 9 1232 348 229 67 121 chr1 84905000 84905012 -112290420 - RSINE1 SINE B4 -139 26 15 9 1232 287 220 54 102 chr1 84905002 84905149 -112290283 + RLTR25B LTR ERVK 381 520 -508 9 1232 639 127 39 10 chr1 84905068 84905171 -112290261 + B1_Mur1 SINE Alu 44 149 0 9 1232 663 123 188 47 chr1 84905260 84905388 -112290044 - B1_Mus1 SINE Alu -2 146 1 9 1232 282 292 104 37 chr1 84905666 84905678 -112289754 + ID_B1 SINE B4 79 162 -62 9 1232 338 211 154 26 chr1 84905678 84905795 -112289637 + B1F SINE Alu 10 141 -8 9 1232 387 0 0 0 chr1 84905813 84905856 -112289576 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1232 597 227 0 8 chr1 84905859 84905979 -112289453 + B1_Mur1 SINE Alu 24 142 -7 9 1232 238 260 12 61 chr1 84906000 84906082 -112289350 + ID4 SINE ID 5 82 -1 9 1232 666 209 96 18 chr1 84906283 84906449 -112288983 - B3A SINE B2 -19 179 1 9 1232 221 217 0 80 chr1 84906458 84906508 -112288924 - ID2 SINE ID -11 72 27 9 1232 356 274 26 26 chr1 84907487 84907603 -112287829 - PB1D10 SINE Alu 0 117 2 9 1232 203 314 0 0 chr1 84907605 84907656 -112287776 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1232 247 191 0 0 chr1 84907789 84907831 -112287601 + MLT1D LTR MaLR 464 505 0 9 1232 691 233 194 0 chr1 84907864 84908044 -112287388 - ID_B1 SINE B4 -8 216 2 9 1232 1044 83 0 58 chr1 84908084 84908238 -112287194 - B1_Mus1 SINE Alu -3 145 1 9 1232 532 284 0 0 chr1 84908265 84908374 -112287058 - RSINE1 SINE B4 0 165 57 9 1232 438 311 0 0 chr1 84908413 84908516 -112286916 - PB1D7 SINE Alu 0 120 18 9 1232 195 129 0 0 chr1 84908542 84908573 -112286859 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1232 251 300 9 107 chr1 84908573 84908676 -112286756 - B1F2 SINE Alu -40 109 1 9 1232 642 240 92 49 chr1 84909974 84910158 -112285274 + ID_B1 SINE B4 2 193 -31 9 1232 345 47 0 0 chr1 84910166 84910209 -112285223 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1232 924 138 0 14 chr1 84910307 84910447 -112284985 + B1_Mur4 SINE Alu 5 142 -8 9 1232 1506 43 21 5 chr1 84911324 84911510 -112283922 + B2_Mm2 SINE B2 1 189 -6 9 1232 319 310 0 12 chr1 84911530 84911615 -112283817 + RSINE1 SINE B4 2 85 -80 9 1232 459 52 0 0 chr1 84911651 84911709 -112283723 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1232 531 253 96 0 chr1 84911710 84911856 -112283576 + B3 SINE B2 51 210 -6 9 1232 732 174 148 211 chr1 84911870 84912052 -112283380 + B3 SINE B2 8 212 -4 9 1232 3986 40 8 6 chr1 84912052 84912531 -112282901 + L1Md_F2 LINE L1 6103 6582 0 9 1232 346 174 147 213 chr1 84912531 84912547 -112282885 + B2_Mm1t SINE B2 179 193 0 9 1232 228 163 0 0 chr1 84912769 84912812 -112282620 + T-rich Low_complexity Low_complexity 1 43 0 9 1232 1142 95 0 0 chr1 84912812 84912960 -112282472 - B1_Mus1 SINE Alu 0 148 1 9 1232 384 269 11 11 chr1 84913175 84913269 -112282163 - RSINE1 SINE B4 -69 96 3 9 1232 1238 106 21 5 chr1 84913356 84913545 -112281887 + B2_Mm1t SINE B2 2 193 0 9 1232 1004 101 7 0 chr1 84913551 84913690 -112281742 - B1_Mus1 SINE Alu 0 148 9 9 1232 1225 48 0 0 chr1 84913766 84913911 -112281521 - B1_Mus2 SINE Alu 0 147 3 9 1232 530 253 93 78 chr1 84914035 84914228 -112281204 + ID_B1 SINE B4 29 224 0 9 1232 690 233 44 6 chr1 84914278 84914438 -112280994 - B3A SINE B2 -32 166 1 9 1232 532 271 131 66 chr1 84914506 84914933 -112280499 - L1MC5 LINE L1 -103 7858 7404 9 1232 238 250 145 0 chr1 84914946 84915022 -112280410 - ID_B1 SINE B4 -1 223 137 9 1232 246 229 0 59 chr1 84915022 84915073 -112280359 + B1_Mur4 SINE Alu 1 48 -102 9 1232 430 37 19 0 chr1 84915071 84915125 -112280307 - B2_Mm2 SINE B2 -114 81 27 9 1232 789 51 0 18 chr1 84915150 84915278 -112280154 - B1_Mus2 SINE Alu 0 148 31 9 1232 260 81 0 0 chr1 84915256 84915293 -112280139 - B2_Mm2 SINE B2 -157 38 2 9 1232 312 293 13 13 chr1 84915293 84915366 -112280066 + PB1D10 SINE Alu 33 105 -12 9 1232 873 151 20 20 chr1 84915367 84915516 -112279916 + B1_Mur4 SINE Alu 2 150 0 9 1232 747 189 118 26 chr1 84915547 84915742 -112279690 - ID_B1 SINE B4 -1 223 11 9 1232 234 258 0 120 chr1 84915768 84915843 -112279589 + MIR SINE MIR 78 143 -119 9 1232 1815 150 39 101 chr1 84915843 84916228 -112279204 + ORR1B1 LTR MaLR 31 391 -3 9 1232 1331 44 0 0 chr1 84916277 84916436 -112278996 + B2_Mm1a SINE B2 2 160 -33 9 1232 318 80 0 0 chr1 84916436 84916486 -112278946 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1232 398 260 40 120 chr1 84916658 84916770 -112278662 + RSINE1 SINE B4 5 112 -53 1 1232 1442 103 51 5 chr1 84916770 84916984 -112278448 - URR1A DNA MER1_type -2 224 1 1 1232 398 260 40 120 chr1 84916984 84917046 -112278386 + RSINE1 SINE B4 113 164 -1 1 1232 373 76 30 0 chr1 84917047 84917113 -112278319 + (TTA)n Simple_repeat Simple_repeat 1 68 0 1 1232 699 214 63 14 chr1 84917147 84917289 -112278143 - B1_Mur4 SINE Alu 0 150 2 1 1232 301 290 8 152 chr1 84917290 84917363 -112278069 - PB1D10 SINE Alu -12 105 44 1 1232 1452 70 16 16 chr1 84917363 84917553 -112277879 + B2_Mm2 SINE B2 2 191 -4 1 1232 301 290 8 152 chr1 84917553 84917597 -112277835 - PB1D10 SINE Alu -74 43 5 1 1232 226 226 57 0 chr1 84917610 84917663 -112277769 - PB1D7 SINE Alu 0 120 65 1 1232 522 234 0 35 chr1 84917619 84917734 -112277698 - ID_B1 SINE B4 -9 215 105 1 1232 511 227 34 0 chr1 84917763 84917882 -112277550 - B1F2 SINE Alu 0 149 27 1 1232 405 276 102 22 chr1 84917880 84918017 -112277415 - B1F1 SINE Alu -1 148 1 1 1232 346 314 96 73 chr1 84918580 84918620 -112276812 + B4A SINE B4 2 40 -252 1 1232 1496 63 11 0 chr1 84918620 84918811 -112276621 + B2_Mm1t SINE B2 1 193 0 1 1232 346 314 96 73 chr1 84918811 84918990 -112276442 + B4A SINE B4 41 226 -66 1 1232 381 43 0 0 chr1 84919012 84919059 -112276373 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1232 788 255 14 56 chr1 84919117 84919333 -112276099 - B3 SINE B2 -8 208 2 1 1232 554 240 62 0 chr1 84919684 84919813 -112275619 + RSINE1 SINE B4 1 137 -28 1 1232 3141 179 39 3 chr1 84919871 84920466 -112274966 - RLTR18 LTR ERVK 0 616 1 1 1232 461 165 81 23 chr1 84920678 84920765 -112274667 + B1_Mur4 SINE Alu 28 119 -31 1 1232 614 223 107 13 chr1 84920925 84921075 -112274357 - RSINE1 SINE B4 0 165 2 1 1232 891 221 42 112 chr1 84921254 84921337 -112274095 - ID_B1 SINE B4 -1 223 157 1 1232 1223 41 7 0 chr1 84921337 84921483 -112273949 - B1_Mus1 SINE Alu -1 147 1 1 1232 891 221 42 112 chr1 84921483 84921639 -112273793 - ID_B1 SINE B4 -68 156 1 1 1232 1255 41 0 0 chr1 84921655 84921802 -112273630 - B1_Mus2 SINE Alu 0 147 1 1 1232 507 287 23 87 chr1 84921912 84922084 -112273348 + RSINE1 SINE B4 3 163 -2 1 1232 811 249 156 10 chr1 84922211 84922499 -112272933 - MTEa LTR MaLR -3 376 47 1 1232 763 193 0 14 chr1 84922606 84922748 -112272684 - B1_Mur1 SINE Alu -8 141 2 1 1232 1102 191 29 0 chr1 84922779 84922983 -112272449 - B3 SINE B2 -6 210 1 1 1232 834 249 26 5 chr1 84922988 84923182 -112272250 - B3A SINE B2 0 198 1 1 1232 334 231 0 0 chr1 84923444 84923509 -112271923 - B3A SINE B2 -132 66 2 1 1232 553 155 16 0 chr1 84924056 84924185 -112271247 + CT-rich Low_complexity Low_complexity 2 132 0 1 1232 305 224 0 17 chr1 84924270 84924329 -112271103 + ID_B1 SINE B4 131 188 -36 1 1232 406 183 207 0 chr1 84924384 84924466 -112270966 - B3 SINE B2 -116 100 2 1 1232 233 233 150 0 chr1 84924556 84924616 -112270816 - ID_B1 SINE B4 -18 206 138 1 1232 904 240 5 10 chr1 84924630 84924836 -112270596 + ORR1E LTR MaLR 2 206 -153 1 1232 230 189 0 0 chr1 84924835 84924872 -112270560 + ORR1E LTR MaLR 369 405 -14 1 1232 272 108 0 0 chr1 84924839 84924876 -112270556 + ORR1D2 LTR MaLR 325 361 -9 1 1232 360 259 0 0 chr1 84924906 84924987 -112270445 + ID4 SINE ID 3 83 0 1 1232 387 0 0 0 chr1 84925020 84925063 -112270369 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 1232 1254 72 0 109 chr1 84925081 84925283 -112270149 + B2_Mm2 SINE B2 14 193 -2 1 1232 457 250 30 0 chr1 84925297 84925397 -112270035 + ID_B1 SINE B4 122 224 0 1 1232 482 235 60 113 chr1 84925495 84925620 -112269812 + RSINE1 SINE B4 2 124 -41 1 1232 212 59 29 0 chr1 84925620 84925654 -112269778 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1232 482 235 60 113 chr1 84925654 84925696 -112269736 + RSINE1 SINE B4 125 160 -5 1 1232 512 250 32 117 chr1 84926541 84926695 -112268737 - B4 SINE B4 -29 263 123 1 1232 501 254 42 0 chr1 84926830 84926948 -112268484 - B4A SINE B4 -169 123 1 1 1232 437 302 155 94 chr1 84926986 84927248 -112268184 + MER97b DNA MER1_type? 315 605 -448 1 1232 1025 117 14 0 chr1 84927248 84927393 -112268039 + B1_Mur3 SINE Alu 3 149 0 1 1232 437 302 155 94 chr1 84927393 84927557 -112267875 + MER97b DNA MER1_type? 606 767 -286 1 1232 404 216 0 25 chr1 84927557 84927653 -112267779 + ID4 SINE ID 8 101 -51 1 1232 574 181 222 28 chr1 84927653 84927829 -112267603 + B3 SINE B2 1 210 -6 1 1232 264 295 0 103 chr1 84927829 84927868 -112267564 + BC1_Mm scRNA scRNA 102 129 -23 1 1232 490 256 0 100 chr1 84928285 84928343 -112267089 + B1F SINE Alu 6 63 -86 1 1232 1026 95 0 13 chr1 84928343 84928483 -112266949 + B1_Mus1 SINE Alu 1 138 -10 1 1232 207 0 0 0 chr1 84928483 84928506 -112266926 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1232 1030 128 0 16 chr1 84928519 84928702 -112266730 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1232 490 250 0 126 chr1 84928702 84928800 -112266632 + B1F SINE Alu 64 149 0 1 1232 446 301 16 8 chr1 84928810 84928934 -112266498 + ID_B1 SINE B4 78 202 -22 1 1232 399 127 0 0 chr1 84928934 84928997 -112266435 + (TTTTC)n Simple_repeat Simple_repeat 3 65 0 1 1232 1182 56 0 0 chr1 84929006 84929148 -112266284 - B1_Mus2 SINE Alu -5 142 1 1 1232 210 37 0 0 chr1 84929168 84929195 -112266237 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1232 266 344 99 0 chr1 84929328 84929459 -112265973 + MLT1A1 LTR MaLR 1 144 -264 1 1232 357 264 45 11 chr1 84929528 84929616 -112265816 + B3 SINE B2 118 208 -8 1 1232 565 286 40 11 chr1 84929633 84929810 -112265622 + B3A SINE B2 1 182 -16 1 1232 208 267 0 130 chr1 84930386 84930455 -112264977 - MIRb SINE MIR -85 183 124 1 1232 398 228 258 40 chr1 84930472 84930623 -112264809 - ID_B1 SINE B4 -14 210 27 1 1232 289 228 17 34 chr1 84930570 84930629 -112264803 - ID4_ SINE ID -7 76 19 1 1232 1027 255 77 39 chr1 84932258 84932568 -112262864 - MLT1D LTR MaLR -5 500 179 1 1232 326 293 185 25 chr1 84932593 84932712 -112262720 - RSINE1 SINE B4 0 165 28 1 1232 289 304 53 92 chr1 84932746 84932898 -112262534 - MLT1D LTR MaLR -466 161 16 1 1232 779 165 146 6 chr1 84932977 84933148 -112262284 - B2_Mm2 SINE B2 0 195 1 1 1232 875 247 18 35 chr1 84933191 84933418 -112262014 - ID_B1 SINE B4 0 224 2 1 1232 364 207 132 12 chr1 84933603 84933686 -112261746 + PB1D10 SINE Alu 1 93 -24 1 1232 276 53 0 0 chr1 84933704 84933742 -112261690 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1232 558 310 43 95 chr1 84933802 84934148 -112261284 + ORR1E LTR MaLR 6 333 -26 1 1232 1016 93 0 0 chr1 84934162 84934301 -112261131 - B1_Mus1 SINE Alu -9 139 1 1 1232 373 105 316 9 chr1 84934541 84934655 -112260777 - B2_Mm2 SINE B2 0 195 47 1 1233 1280 97 23 0 chr1 84934669 84934844 -112260588 - B2_Mm2 SINE B2 -15 180 2 1 1233 706 179 171 11 chr1 84934867 84935048 -112260384 - B3 SINE B2 -6 210 1 1 1233 375 170 178 10 chr1 84935066 84935167 -112260265 - B1_Mur4 SINE Alu 0 150 33 1 1233 512 245 0 78 chr1 84935207 84935345 -112260087 + B1_Mur2 SINE Alu 24 148 -1 1 1233 274 262 43 1 chr1 84935355 84935484 -112259948 + L1M4 LINE L1 4149 4282 -1861 1 1233 2003 148 50 0 chr1 84935595 84935898 -112259534 - RLTR19 LTR ERVK 0 499 182 1 1233 950 37 109 7 chr1 84935909 84936046 -112259386 - BC1_Mm scRNA scRNA -1 151 1 1 1233 1338 122 0 30 chr1 84936046 84936249 -112259183 - RLTR19 LTR ERVK -302 197 1 1 1233 2958 123 84 28 chr1 84936249 84936896 -112258536 - RMER6A LTR ERVK -24 732 1 1 1233 1211 77 47 12 chr1 84937229 84937400 -112258032 - B2_Mm2 SINE B2 -18 177 1 1 1233 315 0 0 0 chr1 84937556 84937591 -112257841 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1233 415 241 24 0 chr1 84937610 84937693 -112257739 - B3A SINE B2 -92 106 22 1 1233 180 0 0 0 chr1 84937714 84937734 -112257698 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1233 846 177 0 21 chr1 84937984 84938128 -112257304 + B1_Mur2 SINE Alu 1 141 -8 1 1233 763 196 20 20 chr1 84938849 84938995 -112256437 + B1_Mur3 SINE Alu 2 147 -2 1 1233 906 185 122 21 chr1 84939026 84939214 -112256218 - B3 SINE B2 0 216 10 1 1233 537 16 0 0 chr1 84939255 84939317 -112256115 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1 1233 395 188 0 45 chr1 84939336 84939425 -112256007 + L1MC4a LINE L1 7477 7561 -321 1 1233 1443 206 74 37 chr1 84940059 84940106 -112255326 - ORR1D2 LTR MaLR -4 366 318 1 1233 486 33 0 0 chr1 84940106 84940166 -112255266 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1233 1443 206 74 37 chr1 84940166 84940471 -112254961 - ORR1D2 LTR MaLR -53 317 2 1 1233 2911 189 133 21 chr1 84940492 84940908 -112254524 + RMER19A LTR ERVK 1 486 -251 1 1233 224 59 29 0 chr1 84940908 84940942 -112254490 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1233 2911 189 133 21 chr1 84940942 84941188 -112254244 + RMER19A LTR ERVK 487 736 -1 1 1233 284 325 47 122 chr1 84941456 84941483 -112253949 + B4 SINE B4 65 223 -69 1 1233 602 280 28 14 chr1 84941483 84941628 -112253804 + B1F1 SINE Alu 1 147 -2 1 1233 189 0 0 0 chr1 84941907 84941928 -112253504 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1233 878 99 15 22 chr1 84941928 84942062 -112253370 - B1_Mur4 SINE Alu -16 134 2 1 1233 986 221 14 23 chr1 84942088 84942306 -112253126 - B3 SINE B2 0 216 1 1 1233 326 280 100 57 chr1 84942418 84942558 -112252874 + B1F SINE Alu 3 148 -1 1 1233 777 203 7 0 chr1 84943999 84944147 -112251285 + MTD LTR MaLR 13 161 -258 1 1233 419 319 29 68 chr1 84944353 84944558 -112250874 + MIR SINE MIR 39 235 -27 1 1233 296 321 80 7 chr1 84944630 84944768 -112250664 - L2b LINE L2 -2 3373 3226 1 1233 1178 62 0 7 chr1 84944931 84945076 -112250356 + B1_Mus2 SINE Alu 2 145 -2 1 1233 782 109 29 0 chr1 84945084 84945222 -112250210 + Lx2 LINE L1 6856 6997 0 1 1233 524 276 8 25 chr1 84945324 84945443 -112249989 - RSINE1 SINE B4 -20 145 29 1 1233 1326 226 41 39 chr1 84945546 84945909 -112249523 + MTE2b LTR MaLR 3 366 -13 1 1233 286 321 43 35 chr1 84946260 84946376 -112249056 + MER58B DNA MER1_type 176 292 -49 1 1233 306 73 0 0 chr1 84946414 84946455 -112248977 + (TGG)n Simple_repeat Simple_repeat 1 41 0 1 1233 1191 233 58 54 chr1 84946516 84946877 -112248555 + MTE2a LTR MaLR 47 419 0 1 1233 669 192 0 161 chr1 84947451 84947493 -112247939 - B2_Mm2 SINE B2 -7 188 157 1 1233 333 125 0 0 chr1 84947493 84947549 -112247883 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1233 971 171 11 18 chr1 84947549 84947729 -112247703 - B3 SINE B2 -53 163 2 1 1233 328 297 39 15 chr1 84947891 84948021 -112247411 - MLT1H1 LTR MaLR -251 304 172 1 1233 560 192 134 30 chr1 84948648 84948659 -112246773 - B1_Mur3 SINE Alu 0 149 141 1 1233 207 0 0 0 chr1 84948659 84948682 -112246750 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1233 560 192 134 30 chr1 84948682 84948804 -112246628 - B1_Mur3 SINE Alu -9 140 2 1 1233 1220 181 5 0 chr1 84949489 84949693 -112245739 + B3 SINE B2 2 206 -10 1 1233 771 175 29 0 chr1 84950264 84950401 -112245031 - B1_Mur3 SINE Alu -6 143 3 1 1233 21 0 0 0 chr1 84950473 84950494 -112244938 + AT_rich Low_complexity Low_complexity 1 21 0 1 1233 957 84 0 0 chr1 84950825 84950979 -112244453 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 1 1233 512 56 14 0 chr1 84951283 84951355 -112244077 + (TCCC)n Simple_repeat Simple_repeat 3 75 0 1 1233 458 240 132 0 chr1 84951431 84951552 -112243880 - RSINE1 SINE B4 -10 155 19 1 1233 200 227 45 0 chr1 84951564 84951608 -112243824 + polypyrimidine Low_complexity Low_complexity 4 49 0 1 1233 275 214 0 0 chr1 84952751 84952807 -112242625 - B2_Mm2 SINE B2 -139 56 1 1 1233 284 298 75 19 chr1 84952838 84952944 -112242488 - PB1D10 SINE Alu -5 112 1 1 1233 914 210 80 0 chr1 84952979 84953179 -112242253 - B3 SINE B2 0 216 1 1 1233 414 178 0 0 chr1 84953213 84953303 -112242129 + CT-rich Low_complexity Low_complexity 1 90 0 1 1233 494 123 203 109 chr1 84953566 84953694 -112241738 - B1_Mur4 SINE Alu -10 140 1 1 1233 227 289 37 62 chr1 84953705 84953786 -112241646 - PB1D10 SINE Alu -6 111 33 1 1233 2039 134 101 25 chr1 84954078 84954444 -112240988 - ORR1B1 LTR MaLR 0 394 1 1 1233 441 0 0 0 chr1 84954831 84954880 -112240552 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1233 1259 20 0 20 chr1 84954963 84955113 -112240319 - B1_Mus1 SINE Alu 0 148 2 1 1233 912 149 0 14 chr1 84956109 84956252 -112239180 + B1_Mus1 SINE Alu 2 142 -6 1 1233 220 204 0 0 chr1 84956465 84956509 -112238923 - RSINE1 SINE B4 -109 56 13 1 1233 754 265 71 0 chr1 84956534 84956730 -112238702 - ID_B1 SINE B4 0 224 15 1 1233 213 313 0 81 chr1 84956660 84956747 -112238685 - ID4 SINE ID 0 83 4 1 1233 324 0 0 0 chr1 84956892 84956928 -112238504 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 1 1233 496 250 6 81 chr1 84956928 84957089 -112238343 - B1F2 SINE Alu 0 149 1 1 1233 842 281 23 18 chr1 84957577 84957798 -112237634 - ID_B1 SINE B4 0 224 3 1 1233 295 115 308 34 chr1 84957805 84957922 -112237510 - B2_Mm2 SINE B2 0 195 47 1 1233 1263 65 65 0 chr1 84957959 84958127 -112237305 - B2_Mm1t SINE B2 -14 179 1 1 1233 343 264 11 11 chr1 84959445 84959533 -112235899 - ID SINE ID -136 88 1 1 1233 184 255 20 0 chr1 84959627 84959678 -112235754 + MIRc SINE MIR 109 160 -108 1 1233 291 335 11 55 chr1 84961533 84961670 -112233762 - LTR33B LTR ERVL -328 192 63 1 1233 225 253 215 21 chr1 84961830 84961923 -112233509 - MIRb SINE MIR -43 225 115 1 1233 4890 153 47 36 chr1 84962029 84962921 -112232511 - RMER19B LTR ERVK 0 902 1 1 1233 930 94 7 0 chr1 84962934 84963072 -112232360 + B2_Mm2 SINE B2 15 153 -42 1 1233 666 67 11 0 chr1 84963099 84963211 -112232221 + B1_Mm SINE Alu 1 120 0 1 1233 212 0 0 35 chr1 84963232 84963261 -112232171 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1233 285 51 0 0 chr1 84963270 84963309 -112232123 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1233 295 325 70 9 chr1 84963309 84963424 -112232008 - RSINE1 SINE B4 -41 124 3 1 1233 399 223 198 86 chr1 84964065 84964227 -112231205 + B3A SINE B2 2 181 -17 1 1233 23 33 0 0 chr1 84964227 84964257 -112231175 + AT_rich Low_complexity Low_complexity 1 30 0 1 1233 382 311 87 44 chr1 84964262 84964491 -112230941 - RLTR15 LTR ERVK -15 344 106 1 1233 36393 60 1 5 chr1 84964493 84968205 -112227227 - L1Md_F2 LINE L1 0 6582 2891 1 1233 1463 53 26 11 chr1 84968205 84968234 -112227198 - B2_Mm1t SINE B2 0 193 161 1 1233 207 0 0 0 chr1 84968234 84968257 -112227175 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1233 1463 53 26 11 chr1 84968257 84968417 -112227015 - B2_Mm1t SINE B2 -33 160 1 1 1233 36393 78 1 35 chr1 84968417 84970869 -112224563 - L1Md_F2 LINE L1 -2993 2890 521 1 1233 278 224 12 12 chr1 84970869 84970955 -112224477 - RLTR15 LTR ERVK -225 134 49 1 1233 1392 89 16 10 chr1 84970959 84971151 -112224281 - B2_Mm2 SINE B2 -1 194 2 1 1233 332 286 88 38 chr1 84971151 84971311 -112224121 - RLTR12B LTR ERVK -334 194 27 1 1233 415 166 20 55 chr1 84971294 84971395 -112224037 + B1_Mus2 SINE Alu 47 149 -1 1 1233 201 74 0 0 chr1 84971408 84971435 -112223997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1233 236 319 0 0 chr1 84971485 84971557 -112223875 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 1 1233 628 138 0 44 chr1 84971559 84971658 -112223774 - MTC LTR MaLR 0 378 285 1 1233 477 236 106 37 chr1 84971658 84971847 -112223585 - RMER10B LTR ERVL -2 396 195 1 1233 866 186 82 10 chr1 84972431 84972626 -112222806 - B3 SINE B2 -1 215 7 1 1233 1770 104 3 18 chr1 84972914 84973199 -112222233 - RMER19B LTR ERVK -3 899 619 1 1233 1647 149 139 3 chr1 84973214 84973530 -112221902 - RMER19B LTR ERVK -539 363 5 1 1233 711 75 16 48 chr1 84973663 84973789 -112221643 - RMER19B LTR ERVK 0 902 781 1 1233 1556 144 0 4 chr1 84973793 84974044 -112221388 - MTC LTR MaLR -171 250 1 1 1233 7503 159 32 17 chr1 84974930 84976706 -112218726 - Lx5 LINE L1 0 7050 5240 1 1233 2621 173 65 145 chr1 84976706 84977598 -112217834 - RLTR25A LTR ERVK 0 1103 283 1 1233 1119 199 13 0 chr1 84977598 84977829 -112217603 - L1_Mur2 LINE L1 -5869 843 610 1 1233 467 250 30 66 chr1 84978118 84978285 -112217147 + L1MB4 LINE L1 5440 5600 -571 1 1233 1159 76 0 0 chr1 84978287 84978432 -112217000 + B1_Mus2 SINE Alu 1 145 -2 1 1233 1134 107 47 6 chr1 84978548 84978718 -112216714 + B2_Mm1a SINE B2 2 178 -15 1 1233 435 242 41 24 chr1 84978718 84978841 -112216591 + L1MB4 LINE L1 5607 5731 -458 1 1233 278 321 119 0 chr1 84978843 84978952 -112216480 + ORR1E LTR MaLR 20 141 -218 1 1233 1406 218 111 14 chr1 84978961 84979402 -112216030 - RMER5 LTR ERV1 -7 527 44 1 1233 467 218 73 0 chr1 84979513 84979637 -112215795 + ORR1E LTR MaLR 232 364 -15 1 1233 2207 261 83 103 chr1 84979635 84980606 -112214826 + ORR1E-int LTR MaLR 8 959 -621 1 1233 776 150 113 0 chr1 84981598 84981731 -112213701 + B1_Mus1 SINE Alu 1 148 0 1 1233 1799 56 30 46 chr1 84981821 84982084 -112213348 + L1Md_F2 LINE L1 6324 6582 0 1 1233 1870 255 66 24 chr1 84982120 84982667 -112212765 + ORR1E-int LTR MaLR 957 1527 -53 1 1233 1020 250 44 59 chr1 84982667 84983043 -112212389 + ORR1E LTR MaLR 1 377 -2 1 1233 488 274 101 29 chr1 84983066 84983205 -112212227 + RSINE1 SINE B4 1 149 -16 1 1233 392 176 0 76 chr1 84983231 84983323 -112212109 + L1MB4 LINE L1 5746 5830 -350 1 1233 503 209 0 0 chr1 84983338 84983443 -112211989 + PB1D9 SINE Alu 10 114 -6 1 1233 526 233 35 70 chr1 84984800 84984971 -112210461 + RLTR33 LTR ERVK 429 593 -85 1 1233 453 227 80 140 chr1 84985175 84985375 -112210057 + MTE2b LTR MaLR 2 189 -190 1 1233 1248 91 0 0 chr1 84985431 84985607 -112209825 + (TTTCC)n Simple_repeat Simple_repeat 1 176 0 1 1233 213 128 40 60 chr1 84985627 84985649 -112209783 + T-rich Low_complexity Low_complexity 30 50 0 1 1233 1190 55 7 0 chr1 84985649 84985795 -112209637 - B1_Mus1 SINE Alu 0 148 2 1 1233 213 128 40 60 chr1 84985795 84985822 -112209610 + T-rich Low_complexity Low_complexity 2 29 0 1 1233 1292 135 77 5 chr1 84986052 84986261 -112209171 - URR1B DNA MER1_type -1 224 1 1 1233 549 96 0 0 chr1 84987069 84987163 -112208269 + (GA)n Simple_repeat Simple_repeat 2 95 0 1 1233 402 254 25 34 chr1 84987603 84987721 -112207711 - RSINE1 SINE B4 -6 159 43 1 1233 593 294 57 37 chr1 84987894 84988138 -112207294 + RMER20B LTR ERVK 116 364 -263 1 1233 1143 78 0 0 chr1 84988568 84988709 -112206723 - B1_Mus2 SINE Alu -6 141 1 1 1233 345 273 97 41 chr1 84991261 84991406 -112204026 + Lx8 LINE L1 7243 7395 -78 1 1233 325 259 0 0 chr1 84991936 84992017 -112203415 + G-rich Low_complexity Low_complexity 1 81 0 1 1233 631 124 0 17 chr1 84992356 84992471 -112202961 + (GGA)n Simple_repeat Simple_repeat 3 115 0 1 1233 2674 51 6 9 chr1 84992471 84992809 -112202623 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1233 27968 19 2 2 chr1 84992809 84995906 -112199526 - IAPEz-int LTR ERVK 0 6481 3384 1 1233 6356 69 101 30 chr1 84995890 84996801 -112198631 - IAPEz-int LTR ERVK -5498 983 8 1 1233 2626 57 6 9 chr1 84996801 84997138 -112198294 - IAPLTR1a_Mm LTR ERVK 0 337 2 1 1233 866 99 8 0 chr1 84997138 84997269 -112198163 + (GAA)n Simple_repeat Simple_repeat 3 134 0 1 1233 824 168 0 53 chr1 84997575 84997739 -112197693 - B3 SINE B2 -15 201 45 1 1233 733 143 127 0 chr1 84997739 84997865 -112197567 - B1_Mus1 SINE Alu -6 142 1 1 1233 2162 275 80 100 chr1 84998857 84999828 -112195604 - MTEa-int LTR MaLR -621 959 8 1 1233 467 218 73 0 chr1 84999826 84999950 -112195482 - MTEa LTR MaLR -15 364 232 1 1233 1398 218 111 14 chr1 85000061 85000502 -112194930 + RMER5 LTR ERV1 44 527 -7 1 1233 278 321 119 0 chr1 85000511 85000620 -112194812 - ORR1E LTR MaLR -218 141 20 2 1233 427 248 40 24 chr1 85000622 85000746 -112194686 - L1M3 LINE L1 -458 5731 5606 3 1233 369 0 0 0 chr1 85000748 85000789 -112194643 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1233 955 108 7 7 chr1 85000790 85000939 -112194493 - B2_Mm1a SINE B2 -43 150 2 5 1233 198 0 0 0 chr1 85000985 85001007 -112194425 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1233 1228 48 0 0 chr1 85001009 85001156 -112194276 - B1_Mus2 SINE Alu 0 147 1 7 1233 464 250 30 66 chr1 85001158 85001325 -112194107 - L1M3 LINE L1 -571 5600 5440 3 1233 1194 192 12 0 chr1 85001614 85001854 -112193578 + Lx5 LINE L1 984 1226 -5860 8 1233 2512 169 63 165 chr1 85001867 85002477 -112192955 + RLTR25A LTR ERVK 302 890 -213 9 1233 1553 43 21 0 chr1 85002477 85002665 -112192767 - B2_Mm1a SINE B2 0 193 2 1 1233 2512 169 63 165 chr1 85002665 85002947 -112192485 + RLTR25A LTR ERVK 891 1103 0 9 1233 7696 158 28 10 chr1 85002947 85004712 -112190720 + Lx5 LINE L1 5240 7043 -7 8 1233 1601 137 0 22 chr1 85005624 85005893 -112189539 + MTC LTR MaLR 1 263 -158 1 1233 716 82 16 47 chr1 85005877 85006005 -112189427 + RMER19B LTR ERVK 779 902 0 1 1233 1605 166 133 6 chr1 85006138 85006477 -112188955 + RMER19B LTR ERVK 5 386 -516 1 1233 1780 100 3 18 chr1 85006469 85006754 -112188678 + RMER19B LTR ERVK 619 899 -3 1 1233 880 181 82 10 chr1 85007039 85007234 -112188198 + B3 SINE B2 7 215 -1 1 1233 477 236 106 37 chr1 85007818 85008007 -112187425 + RMER10B LTR ERVL 195 396 -2 1 1233 610 147 0 44 chr1 85008007 85008106 -112187326 + MTC LTR MaLR 285 378 0 1 1233 428 176 40 48 chr1 85008118 85008230 -112187202 - Lx9 LINE L1 -127 7517 7405 1 1233 201 74 0 0 chr1 85008230 85008257 -112187175 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1233 428 176 40 48 chr1 85008257 85008269 -112187163 - Lx9 LINE L1 -240 7404 7394 1 1233 442 153 20 55 chr1 85008270 85008371 -112187061 - B1_Mus2 SINE Alu -1 149 47 1 1233 369 265 99 35 chr1 85008354 85008514 -112186918 + RLTR12B LTR ERVK 27 197 -331 1 1233 1012 103 0 0 chr1 85008514 85008659 -112186773 + B2_Mm2 SINE B2 2 146 -49 2 1233 251 86 50 33 chr1 85009373 85009433 -112185999 + B2_Mm2 SINE B2 134 194 -1 2 1233 268 235 12 12 chr1 85009437 85009523 -112185909 + RLTR15 LTR ERVK 49 134 -225 2 1233 6443 84 2 49 chr1 85009523 85011153 -112184279 + L1Md_F LINE L1 521 2070 -3813 2 1233 41344 16 2 6 chr1 85011161 85017752 -112177680 - L1Md_A LINE L1 0 6582 20 2 1233 4791 68 0 0 chr1 85017749 85018367 -112177065 + L1Md_F LINE L1 2056 2673 -3210 2 1233 12670 62 3 0 chr1 85018365 85019941 -112175491 + L1Md_F LINE L1 3982 5562 -321 2 1233 303 328 61 87 chr1 85019941 85019965 -112175467 + RLTR15 LTR ERVK 75 98 -261 2 1233 8152 47 3 7 chr1 85019965 85020965 -112174467 + L1Md_F2 LINE L1 5587 6582 0 2 1233 303 328 61 87 chr1 85020965 85021057 -112174375 + RLTR15 LTR ERVK 99 179 -180 2 1233 1701 21 5 0 chr1 85021057 85021248 -112174184 + B2_Mm1t SINE B2 1 192 -1 2 1233 303 328 61 87 chr1 85021248 85021407 -112174025 + RLTR15 LTR ERVK 180 344 -15 2 1233 23 33 0 0 chr1 85021412 85021442 -112173990 + AT_rich Low_complexity Low_complexity 1 30 0 2 1233 399 223 198 86 chr1 85021442 85021604 -112173828 - B3A SINE B2 -17 181 2 2 1233 289 321 71 9 chr1 85022247 85022360 -112173072 + RSINE1 SINE B4 5 124 -41 2 1233 351 0 0 0 chr1 85022360 85022399 -112173033 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1233 217 0 0 57 chr1 85022412 85022447 -112172985 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1233 666 63 0 0 chr1 85022467 85022562 -112172870 - B1_Mm SINE Alu -52 95 1 3 1233 408 161 21 75 chr1 85022478 85022572 -112172860 - MT2B LTR ERVL -360 241 153 3 1233 998 79 0 0 chr1 85022589 85022728 -112172704 - B2_Mm2 SINE B2 -42 153 15 3 1233 4837 155 47 36 chr1 85022741 85023633 -112171799 + RMER19B LTR ERVK 1 902 0 3 1233 224 253 215 21 chr1 85023739 85023832 -112171600 + MIRb SINE MIR 115 225 -43 3 1233 280 336 36 88 chr1 85023992 85024129 -112171303 + LTR33B LTR ERVL 63 192 -328 3 1233 188 236 36 0 chr1 85025980 85026035 -112169397 - MIRb SINE MIR -100 168 112 3 1233 338 276 11 11 chr1 85026129 85026217 -112169215 + ID SINE ID 1 88 -136 3 1233 1205 72 72 0 chr1 85027512 85027679 -112167753 + B2_Mm1t SINE B2 1 179 -14 4 1233 295 115 308 34 chr1 85027716 85027833 -112167599 + B2_Mm2 SINE B2 47 195 0 4 1233 842 281 23 18 chr1 85027840 85028061 -112167371 + ID_B1 SINE B4 3 224 0 4 1233 490 257 6 81 chr1 85028546 85028707 -112166725 + B1_Mur1 SINE Alu 1 149 0 4 1233 230 300 0 81 chr1 85028868 85028955 -112166477 + ID4 SINE ID 4 83 0 4 1233 790 255 71 0 chr1 85028885 85029081 -112166351 + ID_B1 SINE B4 15 224 0 4 1233 220 204 0 0 chr1 85029106 85029150 -112166282 + RSINE1 SINE B4 13 56 -109 4 1233 23 0 0 0 chr1 85029331 85029354 -112166078 + AT_rich Low_complexity Low_complexity 1 23 0 4 1233 934 135 0 14 chr1 85029366 85029509 -112165923 - B1_Mus1 SINE Alu -6 142 2 4 1233 1267 34 0 0 chr1 85030507 85030654 -112164778 + B1_Mus1 SINE Alu 2 148 0 4 1233 189 74 0 0 chr1 85030654 85030681 -112164751 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1233 516 16 0 0 chr1 85030757 85030818 -112164614 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1233 2094 129 102 11 chr1 85031209 85031570 -112163862 + ORR1B1 LTR MaLR 1 394 0 5 1233 227 289 37 62 chr1 85031861 85031942 -112163490 + PB1D10 SINE Alu 33 111 -6 5 1233 531 114 210 81 chr1 85031953 85032077 -112163355 + B1_Mur4 SINE Alu 1 140 -10 5 1233 306 194 0 0 chr1 85032335 85032397 -112163035 + GA-rich Low_complexity Low_complexity 4 65 0 5 1233 893 211 80 0 chr1 85032433 85032632 -112162800 + B3 SINE B2 2 216 0 5 1233 288 308 76 9 chr1 85032667 85032772 -112162660 + PB1D10 SINE Alu 1 112 -5 5 1233 256 232 0 0 chr1 85032803 85032859 -112162573 + B2_Mm2 SINE B2 1 56 -139 5 1233 200 227 45 0 chr1 85033999 85034043 -112161389 + polypurine Low_complexity Low_complexity 4 49 0 5 1233 460 248 132 0 chr1 85034055 85034176 -112161256 + RSINE1 SINE B4 19 155 -10 6 1233 387 60 0 0 chr1 85034185 85034235 -112161197 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1233 350 42 21 0 chr1 85034274 85034322 -112161110 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 6 1233 516 16 0 0 chr1 85034627 85034688 -112160744 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 1233 359 267 78 0 chr1 85034939 85035029 -112160403 + B1F SINE Alu 39 135 -14 6 1233 21 0 0 0 chr1 85035029 85035050 -112160382 + AT_rich Low_complexity Low_complexity 1 21 0 6 1233 787 168 29 0 chr1 85035122 85035259 -112160173 + B1_Mur3 SINE Alu 3 143 -6 6 1233 231 342 0 13 chr1 85035515 85035592 -112159840 + L2a LINE L2 3341 3416 -10 6 1233 355 280 19 101 chr1 85036088 85036247 -112159185 + RSINE1 SINE B4 18 163 -2 6 1233 910 250 0 23 chr1 85036314 85036535 -112158897 + B3 SINE B2 1 216 0 6 1233 312 128 330 9 chr1 85036539 85036648 -112158784 - B2_Mm2 SINE B2 -5 190 47 7 1233 1270 102 11 0 chr1 85036710 85036886 -112158546 - B2_Mm1a SINE B2 -14 179 2 7 1233 1237 34 7 0 chr1 85036984 85037130 -112158302 - B1_Mm SINE Alu 0 147 1 7 1233 1230 201 0 18 chr1 85037270 85037488 -112157944 + B3 SINE B2 1 214 -2 7 1233 970 192 0 62 chr1 85038028 85038222 -112157210 + B3A SINE B2 1 182 -16 7 1233 413 286 8 25 chr1 85038673 85038795 -112156637 + B4A SINE B4 173 292 0 7 1233 925 293 75 33 chr1 85038885 85039407 -112156025 + L1MB8 LINE L1 5595 6138 -40 7 1233 1685 195 74 11 chr1 85039538 85039916 -112155516 + MTD LTR MaLR 6 407 -12 7 1233 239 0 32 0 chr1 85039992 85040023 -112155409 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1233 2519 83 60 0 chr1 85040972 85041356 -112154076 - MTB_Mm LTR MaLR 0 407 1 7 1233 365 246 115 0 chr1 85041377 85041507 -112153925 + L1M2 LINE L1 3816 3960 -2183 8 1233 716 42 10 0 chr1 85041649 85041745 -112153687 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 8 1233 520 275 176 0 chr1 85041786 85041968 -112153464 - B3 SINE B2 -1 215 2 8 1233 532 183 0 0 chr1 85041988 85042081 -112153351 + B1_Mus2 SINE Alu 44 136 -11 8 1233 593 247 45 70 chr1 85042196 85042396 -112153036 + B3 SINE B2 21 215 -1 8 1233 1909 176 8 42 chr1 85042728 85043113 -112152319 - ORR1C1 LTR MaLR 0 378 7 8 1233 1109 188 33 9 chr1 85043643 85043853 -112151579 + B3 SINE B2 1 215 -1 8 1233 17174 74 0 6 chr1 85043882 85047833 -112147599 + L1Md_Gf LINE L1 1 3429 -2457 8 1233 39950 55 1 23 chr1 85047843 85054523 -112140909 - L1Md_T LINE L1 0 6582 99 8 1233 12242 19 0 0 chr1 85055333 85056720 -112138712 + L1Md_T LINE L1 4200 5586 -297 8 1233 8670 31 0 0 chr1 85056720 85057716 -112137716 + L1Md_T LINE L1 5587 6582 0 8 1233 247 339 62 0 chr1 85057943 85058055 -112137377 + PB1D7 SINE Alu 2 120 0 9 1233 423 0 0 0 chr1 85058200 85058247 -112137185 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1233 67 0 0 0 chr1 85058251 85058318 -112137114 + AT_rich Low_complexity Low_complexity 1 67 0 9 1233 622 217 0 30 chr1 85058321 85058454 -112136978 + B1_Mus1 SINE Alu 11 139 -9 9 1233 378 0 0 0 chr1 85058470 85058512 -112136920 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1233 260 301 14 0 chr1 85058574 85058647 -112136785 - B3A SINE B2 -124 74 1 9 1233 216 325 0 12 chr1 85058656 85058740 -112136692 + (TG)n Simple_repeat Simple_repeat 2 84 0 9 1233 339 176 15 0 chr1 85058860 85058928 -112136504 - B4A SINE B4 -222 70 2 9 1233 245 250 33 0 chr1 85059568 85059628 -112135804 + B4A SINE B4 84 145 -147 9 1233 523 239 17 3 chr1 85059575 85059707 -112135725 + B1F SINE Alu 8 146 -1 9 1233 2418 153 50 24 chr1 85060520 85060981 -112134451 - RMER1B Other Other -4 1062 590 1 1233 15963 18 5 13 chr1 85061114 85063968 -112131464 - L1Md_A LINE L1 -2842 3041 215 1 154 1938 164 36 22 chr1 85065722 85066083 -112129349 + ORR1B2 LTR MaLR 2 367 0 1 1234 2364 150 3 10 chr1 85066587 85066977 -112128455 + ORR1B1 LTR MaLR 1 387 -7 1 1234 288 222 16 0 chr1 85067384 85067447 -112127985 + LTR53 LTR ERVL 3 66 -453 1 1234 366 244 128 0 chr1 85067892 85067978 -112127454 + ID_B1 SINE B4 121 217 -7 1 1234 547 240 8 8 chr1 85069516 85069646 -112125786 - ID_B1 SINE B4 -8 216 87 1 1234 728 148 19 6 chr1 85072128 85072284 -112123148 + CT-rich Low_complexity Low_complexity 3 160 0 1 1234 311 250 121 30 chr1 85072296 85072395 -112123037 - B1_Mus1 SINE Alu -35 113 6 1 1234 1135 247 97 29 chr1 85072574 85072954 -112122478 + MTD LTR MaLR 1 406 -13 1 1234 589 240 1 2 chr1 85073090 85073226 -112122206 - B1_Mur3 SINE Alu 0 149 13 1 1234 4854 116 17 16 chr1 85073342 85074097 -112121335 + RMER6A LTR ERVK 1 756 0 1 1234 1496 63 16 0 chr1 85074189 85074380 -112121052 - B2_Mm2 SINE B2 0 195 2 1 1234 908 316 79 25 chr1 85075370 85075928 -112119504 + L1MB5 LINE L1 5391 5978 -196 1 1234 378 0 0 0 chr1 85080318 85080360 -112115072 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1234 207 69 0 0 chr1 85080360 85080388 -112115044 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1234 21 36 0 0 chr1 85080430 85080458 -112114974 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 719 289 75 39 chr1 85080538 85080819 -112114613 - B4A SINE B4 0 292 2 1 1234 412 67 26 26 chr1 85080946 85081023 -112114409 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 1234 432 0 0 0 chr1 85081023 85081071 -112114361 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1234 211 380 80 0 chr1 85081307 85081420 -112114012 + B4A SINE B4 41 162 -130 1 1234 222 37 0 0 chr1 85081535 85081562 -112113870 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1234 259 260 106 68 chr1 85083274 85083406 -112112026 + MER68-int LTR ERVL 1778 1914 -1076 1 1234 2927 178 24 67 chr1 85083540 85084179 -112111253 + RMER19C LTR ERVK 1 611 0 1 1234 474 342 94 18 chr1 85084572 85085135 -112110297 + L1ME2z LINE L1 5609 6214 -230 1 1234 591 255 0 7 chr1 85085280 85085418 -112110014 + B1_Mur1 SINE Alu 6 142 -7 1 1234 325 306 95 15 chr1 85085704 85085876 -112109556 - MLT1D LTR MaLR 0 627 320 1 1234 3191 202 145 17 chr1 85086689 85087413 -112108019 + Lx4A LINE L1 6231 7047 -11 1 1234 264 256 42 62 chr1 85087867 85087963 -112107469 - ID_B1 SINE B4 -9 215 122 1 1234 189 0 0 0 chr1 85088239 85088260 -112107172 + (CAGAGA)n Simple_repeat Simple_repeat 3 23 0 1 1234 1206 48 0 7 chr1 85088361 85088508 -112106924 + B1_Mus2 SINE Alu 2 147 0 1 1234 189 0 0 0 chr1 85088508 85088529 -112106903 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1234 1099 67 0 24 chr1 85091035 85091203 -112104229 + B2_Mm2 SINE B2 1 164 -31 1 1234 776 280 9 18 chr1 85091687 85091905 -112103527 + B3 SINE B2 1 216 0 1 1234 529 258 8 16 chr1 85092512 85092634 -112102798 - RSINE1 SINE B4 -18 147 27 1 1234 747 150 6 11 chr1 85093335 85093510 -112101922 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 1 1234 471 18 0 0 chr1 85093601 85093657 -112101775 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1234 651 139 28 34 chr1 85094552 85094731 -112100701 + GA-rich Low_complexity Low_complexity 2 179 0 1 1234 345 256 17 23 chr1 85094747 85094923 -112100509 + GA-rich Low_complexity Low_complexity 4 178 0 1 1234 207 261 0 0 chr1 85094964 85095010 -112100422 + GA-rich Low_complexity Low_complexity 1 46 0 1 1234 1213 54 0 0 chr1 85095839 85095986 -112099446 + B1_Mus2 SINE Alu 1 147 0 1 1234 23 0 0 0 chr1 85097357 85097380 -112098052 + AT_rich Low_complexity Low_complexity 1 23 0 1 1234 448 277 35 21 chr1 85097415 85097559 -112097873 - B1_Mur1 SINE Alu -1 148 3 1 1234 1036 229 66 134 chr1 85097565 85097959 -112097473 + MTE2a LTR MaLR 7 373 -6 1 1234 1201 62 0 0 chr1 85097961 85098107 -112097325 + B1_Mm SINE Alu 2 147 0 1 1234 318 50 0 0 chr1 85098107 85098147 -112097285 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1234 463 266 30 30 chr1 85098670 85098802 -112096630 - RSINE1 SINE B4 -31 134 3 1 1234 265 200 13 67 chr1 85098802 85098859 -112096573 + B1F SINE Alu 91 143 -6 1 1234 364 308 39 0 chr1 85098902 85099006 -112096426 + RSINE1 SINE B4 3 110 -55 1 1234 28 29 0 0 chr1 85099138 85099173 -112096259 + AT_rich Low_complexity Low_complexity 1 35 0 1 1234 492 283 97 91 chr1 85099191 85099541 -112095891 - Lx9 LINE L1 -27 7617 7266 1 1234 764 314 75 26 chr1 85099626 85100080 -112095352 + Charlie1b DNA MER1_type 8 483 -40 1 1234 631 197 0 57 chr1 85100081 85100205 -112095227 + B1_Mur1 SINE Alu 6 122 -27 1 1234 25 31 0 0 chr1 85100300 85100332 -112095100 + AT_rich Low_complexity Low_complexity 1 32 0 1 1234 673 295 54 5 chr1 85100407 85100591 -112094841 - B4A SINE B4 -53 239 47 1 1234 540 126 0 0 chr1 85100905 85100992 -112094440 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1234 314 222 37 12 chr1 85100992 85101074 -112094358 + L1MCa LINE L1 2163 2246 -4262 1 1234 603 252 6 31 chr1 85101209 85101369 -112094063 + RSINE1 SINE B4 2 157 -8 1 1234 501 274 29 110 chr1 85102039 85102248 -112093184 - B3A SINE B2 0 198 7 1 1234 351 0 0 0 chr1 85102252 85102291 -112093141 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1234 507 78 0 0 chr1 85102291 85102368 -112093064 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1234 3028 12 109 196 chr1 85102802 85103342 -112092090 + MT2_Mm LTR ERVL 1 493 0 1 1234 20383 14 0 3 chr1 85103342 85105606 -112089826 + MERVL-int LTR ERVL 1 2257 -3228 1 1234 1587 28 0 0 chr1 85105602 85105784 -112089648 - MERVL-int LTR ERVL -3934 1551 1370 1 1234 414 0 0 0 chr1 85107443 85107489 -112087943 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1234 825 11 0 0 chr1 85107542 85107636 -112087796 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 1234 297 0 0 0 chr1 85108001 85108034 -112087398 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 1234 212 149 42 21 chr1 85108682 85108730 -112086702 + G-rich Low_complexity Low_complexity 3 51 0 1 1234 23 0 0 0 chr1 85110319 85110342 -112085090 + AT_rich Low_complexity Low_complexity 1 23 0 1 1234 432 284 35 21 chr1 85110377 85110521 -112084911 - B1_Mur1 SINE Alu -1 148 3 1 1234 588 297 52 76 chr1 85110526 85110843 -112084589 + MTE2a LTR MaLR 6 320 -99 1 1234 316 262 0 0 chr1 85111124 85111204 -112084228 + C-rich Low_complexity Low_complexity 1 80 0 1 1234 1133 85 0 0 chr1 85112291 85112432 -112083000 + B1_Mus2 SINE Alu 1 141 -6 1 1234 369 0 0 0 chr1 85112435 85112476 -112082956 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1234 593 294 62 46 chr1 85112872 85113171 -112082261 - RMER20B LTR ERVK -130 386 90 1 1234 402 254 25 34 chr1 85113303 85113421 -112082011 + RSINE1 SINE B4 43 159 -6 1 1234 327 113 0 0 chr1 85113861 85113923 -112081509 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1234 1219 149 77 5 chr1 85114741 85114950 -112080482 + URR1B DNA MER1_type 1 224 -1 1 1234 182 122 0 68 chr1 85115183 85115204 -112080228 + A-rich Low_complexity Low_complexity 5 24 0 1 1234 1154 68 7 0 chr1 85115204 85115350 -112080082 + B1_Mus1 SINE Alu 2 148 0 1 1234 182 122 0 68 chr1 85115350 85115372 -112080060 + A-rich Low_complexity Low_complexity 25 45 0 1 1234 561 147 0 0 chr1 85115372 85115467 -112079965 + (GGAGA)n Simple_repeat Simple_repeat 5 99 0 1 1234 471 215 80 140 chr1 85115521 85115721 -112079711 - MTE2b LTR MaLR -190 189 2 1 1234 558 242 23 69 chr1 85115925 85116098 -112079334 - RLTR33 LTR ERVK -85 593 429 1 1234 511 200 0 0 chr1 85117454 85117559 -112077873 - PB1D9 SINE Alu -6 114 10 1 1234 390 176 0 76 chr1 85117574 85117666 -112077766 - L1MB4 LINE L1 -350 5830 5746 1 1234 507 267 101 22 chr1 85117690 85117828 -112077604 - RSINE1 SINE B4 -16 149 1 1 1234 1037 258 38 73 chr1 85117857 85118225 -112077207 - ORR1E LTR MaLR -4 355 1 1 1234 1806 264 66 24 chr1 85118225 85118772 -112076660 - ORR1E-int LTR MaLR -53 1527 957 1 1234 1775 68 31 35 chr1 85118808 85119068 -112076364 - L1Md_F2 LINE L1 0 6582 6324 1 1234 687 174 121 0 chr1 85119155 85119287 -112076145 - B1_Mus1 SINE Alu 0 148 1 1 1234 2198 269 80 100 chr1 85120279 85121250 -112074182 - ORR1E-int LTR MaLR -621 959 8 1 1234 452 226 73 0 chr1 85121248 85121372 -112074060 - ORR1E LTR MaLR -15 364 232 1 1234 1517 214 91 13 chr1 85121483 85121932 -112073500 + RMER5 LTR ERV1 44 527 -7 1 1234 278 321 119 0 chr1 85121941 85122050 -112073382 - ORR1E LTR MaLR -218 141 20 1 1234 406 252 41 25 chr1 85122052 85122174 -112073258 - L1MB4 LINE L1 -458 5731 5608 1 1234 414 0 0 0 chr1 85122178 85122224 -112073208 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 1234 992 105 7 7 chr1 85122224 85122373 -112073059 - B2_Mm1a SINE B2 -38 155 7 1 1234 186 71 0 0 chr1 85122419 85122447 -112072985 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1234 1195 61 0 0 chr1 85122450 85122597 -112072835 - B1_Mus2 SINE Alu 0 147 1 1 1234 464 250 30 66 chr1 85122599 85122766 -112072666 - L1MB4 LINE L1 -571 5600 5440 1 1234 1150 191 13 0 chr1 85123055 85123286 -112072146 + Lx5 LINE L1 984 1217 -5869 1 1234 2541 176 65 145 chr1 85123286 85124178 -112071254 + RLTR25A LTR ERVK 283 1103 0 1 1234 7555 161 35 13 chr1 85124178 85125940 -112069492 + Lx5 LINE L1 5240 7050 0 1 1234 1590 141 0 22 chr1 85126830 85127099 -112068333 + MTC LTR MaLR 1 263 -158 1 1234 673 98 16 47 chr1 85127083 85127211 -112068221 + RMER19B LTR ERVK 779 902 0 1 1234 1611 166 133 6 chr1 85127344 85127683 -112067749 + RMER19B LTR ERVK 5 386 -516 1 1234 1768 104 3 18 chr1 85127675 85127960 -112067472 + RMER19B LTR ERVK 619 899 -3 1 1234 832 197 82 10 chr1 85128245 85128440 -112066992 + B3 SINE B2 7 215 -1 1 1234 1559 32 27 0 chr1 85128580 85128765 -112066667 - B2_Mm1t SINE B2 -3 190 1 1 1234 488 235 101 27 chr1 85129215 85129403 -112066029 + RMER10B LTR ERVL 195 396 -2 1 1234 614 147 0 44 chr1 85129403 85129502 -112065930 + MTC LTR MaLR 285 378 0 1 1234 428 176 40 48 chr1 85129514 85129626 -112065806 - Lx9 LINE L1 -127 7517 7405 1 1234 201 74 0 0 chr1 85129626 85129653 -112065779 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1234 428 176 40 48 chr1 85129653 85129665 -112065767 - Lx9 LINE L1 -240 7404 7394 1 1234 442 153 20 55 chr1 85129666 85129767 -112065665 - B1_Mus2 SINE Alu -1 149 47 2 1234 339 276 89 38 chr1 85129750 85129908 -112065524 + RLTR12B LTR ERVK 27 192 -336 2 1234 1365 95 16 16 chr1 85129910 85130102 -112065330 + B2_Mm2 SINE B2 2 193 -2 2 1234 259 247 12 12 chr1 85130106 85130192 -112065240 + RLTR15 LTR ERVK 49 134 -225 2 1234 16414 88 45 25 chr1 85130192 85133403 -112062029 + L1Md_F LINE L1 114 3388 -2495 2 1234 2069 109 238 44 chr1 85133403 85133862 -112061570 - RLTR6_Mm LTR ERV1 -70 584 37 2 1234 68756 15 12 0 chr1 85133971 85141656 -112053776 - RLTR6-int LTR ERV1 0 7778 1 2 1234 2209 104 227 44 chr1 85141656 85142137 -112053295 - RLTR6_Mm LTR ERV1 -49 605 37 2 1234 15069 70 0 0 chr1 85142246 85144165 -112051267 + L1Md_F LINE L1 3385 5303 -580 2 1234 38937 22 2 8 chr1 85144153 85149490 -112045942 + L1Md_F2 LINE L1 326 5629 -254 2 1234 3900 59 0 12 chr1 85149490 85149988 -112045444 + L1Md_F2 LINE L1 6091 6582 0 2 1234 350 315 84 40 chr1 85149989 85150214 -112045218 + RLTR15 LTR ERVK 110 344 -15 2 1234 23 33 0 0 chr1 85150219 85150249 -112045183 + AT_rich Low_complexity Low_complexity 1 30 0 2 1234 391 223 198 86 chr1 85150249 85150411 -112045021 - B3A SINE B2 -17 181 2 2 1234 273 342 70 9 chr1 85151072 85151187 -112044245 + RSINE1 SINE B4 3 124 -41 2 1234 477 0 0 0 chr1 85151187 85151240 -112044192 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1234 212 0 0 35 chr1 85151253 85151282 -112044150 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1234 646 97 13 0 chr1 85151309 85151418 -112044014 - B1_Mm SINE Alu 0 120 1 2 1234 415 172 21 75 chr1 85151334 85151428 -112044004 - MT2B LTR ERVL -360 241 153 2 1234 932 94 7 0 chr1 85151445 85151583 -112043849 - B2_Mm2 SINE B2 -42 153 15 2 1234 4785 158 47 36 chr1 85151596 85152488 -112042944 + RMER19B LTR ERVK 1 902 0 2 1234 232 253 215 21 chr1 85152594 85152687 -112042745 + MIRb SINE MIR 115 225 -43 2 1234 269 342 8 51 chr1 85152853 85152970 -112042462 + LTR33B LTR ERVL 81 192 -311 2 1234 342 253 11 11 chr1 85154984 85155072 -112040360 + ID SINE ID 1 88 -136 2 1234 3533 25 0 0 chr1 85155319 85155715 -112039717 + MTA_Mm LTR MaLR 1 396 0 2 1234 9103 41 3 4 chr1 85155715 85156814 -112038618 + MTA_Mm-int LTR MaLR 1 1098 0 2 1234 3535 25 0 0 chr1 85156814 85157210 -112038222 + MTA_Mm LTR MaLR 1 396 0 2 1234 588 29 0 0 chr1 85157599 85157669 -112037763 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1234 1245 129 3 3 chr1 85157759 85158085 -112037347 + (TCTA)n Simple_repeat Simple_repeat 1 326 0 2 1234 540 250 8 16 chr1 85158786 85158908 -112036524 + RSINE1 SINE B4 27 147 -18 2 1234 787 285 9 14 chr1 85159515 85159732 -112035700 - B3 SINE B2 0 216 1 2 1234 1099 67 0 24 chr1 85160216 85160384 -112035048 - B2_Mm2 SINE B2 -31 164 1 2 1234 584 257 35 70 chr1 85162376 85162577 -112032855 - B3A SINE B2 0 198 5 2 1234 229 186 92 79 chr1 85162828 85162904 -112032528 - Lx8 LINE L1 -28 7445 7369 2 1234 234 0 0 0 chr1 85164915 85164941 -112030491 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1234 1114 89 0 0 chr1 85164941 85165087 -112030345 - B1_Mus2 SINE Alu 0 147 2 2 1234 258 256 42 62 chr1 85165493 85165589 -112029843 + ID_B1 SINE B4 122 215 -9 2 1234 348 276 0 0 chr1 85165612 85165688 -112029744 + ID4 SINE ID 5 80 -3 2 1234 241 363 80 0 chr1 85165948 85166061 -112029371 - B4A SINE B4 -130 162 41 2 1234 288 0 0 0 chr1 85166297 85166329 -112029103 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1234 448 82 23 23 chr1 85166329 85166416 -112029016 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 2 1234 748 281 75 39 chr1 85166543 85166824 -112028608 + B4A SINE B4 2 292 0 2 1234 21 36 0 0 chr1 85166904 85166932 -112028500 + AT_rich Low_complexity Low_complexity 1 28 0 2 1234 441 36 0 0 chr1 85166974 85167029 -112028403 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1234 324 0 0 0 chr1 85167029 85167064 -112028368 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1234 4578 8 0 0 chr1 85169082 85169575 -112025857 + MT2_Mm LTR ERVL 1 493 0 2 1234 48177 22 0 0 chr1 85169575 85174933 -112020499 + MERVL-int LTR ERVL 1 5360 -125 2 1234 384 179 46 35 chr1 85174933 85175020 -112020412 + ORR1A3-int LTR MaLR 553 640 -1323 2 1234 319 0 0 0 chr1 85175020 85175058 -112020374 + MERVL-int LTR ERVL 5448 5485 0 2 1234 4522 12 0 0 chr1 85175058 85175551 -112019881 + MT2_Mm LTR ERVL 1 493 0 2 1234 185 280 137 21 chr1 85176215 85176311 -112019121 + MIRc SINE MIR 45 150 -58 2 1234 194 306 58 36 chr1 85177500 85177621 -112017811 + MIRc SINE MIR 30 157 -111 2 1234 308 306 73 0 chr1 85177792 85177916 -112017516 - L1MB5 LINE L1 -1 6177 6045 2 1234 923 314 79 25 chr1 85177935 85178493 -112016939 - L1MB5 LINE L1 -196 5978 5391 2 1234 1495 63 16 0 chr1 85179465 85179656 -112015776 + B2_Mm2 SINE B2 2 195 0 2 1234 4843 114 17 17 chr1 85179745 85180501 -112014931 - RMER6A LTR ERVK 0 756 1 2 1234 666 232 1 2 chr1 85180617 85180753 -112014679 + B1_Mur3 SINE Alu 13 149 0 2 1234 1240 253 100 28 chr1 85180879 85181270 -112014162 - MTD LTR MaLR 0 419 1 2 1234 357 240 121 30 chr1 85181449 85181548 -112013884 + B1_Mus1 SINE Alu 6 113 -35 2 1234 654 170 14 7 chr1 85181560 85181708 -112013724 + GA-rich Low_complexity Low_complexity 3 151 0 2 1234 251 331 66 60 chr1 85184006 85184157 -112011275 - MER57E1 LTR ERV1 -212 160 9 2 1234 605 233 8 8 chr1 85184170 85184300 -112011132 + ID_B1 SINE B4 87 216 -8 2 1234 413 233 128 0 chr1 85185837 85185923 -112009509 - ID_B1 SINE B4 -7 217 121 2 1234 306 243 299 0 chr1 85185923 85185944 -112009488 - B1F1 SINE Alu -7 142 4 2 1234 313 222 16 0 chr1 85186364 85186427 -112009005 - LTR53 LTR ERVL -453 66 3 2 1234 2562 142 3 10 chr1 85186834 85187224 -112008208 - ORR1B1 LTR MaLR -7 387 1 2 1234 1349 167 20 24 chr1 85187728 85187980 -112007452 - ORR1B2 LTR MaLR 0 367 117 2 1234 261 330 62 0 chr1 85189613 85189725 -112005707 + PB1D7 SINE Alu 2 120 0 2 1234 405 0 0 0 chr1 85189870 85189915 -112005517 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1234 687 215 0 29 chr1 85189951 85190090 -112005342 + B1_Mus2 SINE Alu 5 139 -8 2 1234 243 0 0 0 chr1 85190103 85190130 -112005302 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1234 269 315 14 0 chr1 85190194 85190267 -112005165 - B3A SINE B2 -124 74 1 2 1234 203 329 0 12 chr1 85190280 85190360 -112005072 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1234 313 244 35 0 chr1 85190461 85190547 -112004885 - B4A SINE B4 -202 90 2 2 1234 602 227 61 0 chr1 85191194 85191326 -112004106 + B1F SINE Alu 9 148 -1 2 1234 2439 153 50 24 chr1 85192139 85192600 -112002832 - RMER1B Other Other -4 1062 590 2 1234 414 143 0 0 chr1 85196451 85196542 -111998890 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1235 361 307 125 66 chr1 85197194 85197330 -111998102 - B1F SINE Alu -1 148 5 2 1235 632 219 0 115 chr1 85197449 85197614 -111997818 - B1_Mur1 SINE Alu -1 148 3 2 1235 1065 115 13 0 chr1 85197656 85197813 -111997619 + B2_Mm1a SINE B2 21 179 -14 2 1235 332 129 330 18 chr1 85197875 85197984 -111997448 + B2_Mm2 SINE B2 47 189 -6 2 1235 906 255 0 23 chr1 85197988 85198209 -111997223 - B3 SINE B2 0 216 1 2 1235 381 287 19 101 chr1 85198275 85198434 -111996998 - RSINE1 SINE B4 -2 163 18 2 1235 267 329 0 13 chr1 85198930 85199007 -111996425 - L2a LINE L2 -10 3416 3341 2 1235 826 175 29 0 chr1 85199263 85199400 -111996032 - B1_Mur3 SINE Alu -6 143 3 2 1235 21 0 0 0 chr1 85199472 85199493 -111995939 + AT_rich Low_complexity Low_complexity 1 21 0 2 1235 681 45 0 0 chr1 85199838 85199927 -111995505 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 2 1235 279 272 43 11 chr1 85200095 85200188 -111995244 + MLT1L LTR MaLR 146 241 -369 2 1235 524 56 14 0 chr1 85200231 85200303 -111995129 + (TCCC)n Simple_repeat Simple_repeat 3 75 0 2 1235 502 240 132 0 chr1 85200375 85200496 -111994936 - RSINE1 SINE B4 -10 155 19 2 1235 207 0 0 0 chr1 85200521 85200544 -111994888 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 2 1235 295 214 0 0 chr1 85201699 85201755 -111993677 - B2_Mm2 SINE B2 -139 56 1 2 1235 268 317 76 9 chr1 85201786 85201891 -111993541 - PB1D10 SINE Alu -5 112 1 2 1235 926 205 80 0 chr1 85201926 85202126 -111993306 - B3 SINE B2 0 216 1 2 1235 471 134 0 0 chr1 85202160 85202242 -111993190 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 1235 483 176 163 31 chr1 85202473 85202485 -111992947 - B1_Mus2 SINE Alu -1 146 136 2 1235 186 43 0 0 chr1 85202485 85202508 -111992924 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1235 483 176 163 31 chr1 85202508 85202555 -111992877 - B1_Mus2 SINE Alu -12 135 90 2 1235 650 13 13 0 chr1 85202555 85202634 -111992798 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 1235 483 176 163 31 chr1 85202634 85202702 -111992730 - B1_Mus2 SINE Alu -58 89 2 2 1235 249 305 35 58 chr1 85202707 85202794 -111992638 - PB1D10 SINE Alu 0 117 33 2 1235 2072 132 103 8 chr1 85203086 85203446 -111991986 - ORR1B1 LTR MaLR 0 394 1 2 1235 480 18 0 0 chr1 85203837 85203894 -111991538 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1235 207 0 0 0 chr1 85203968 85203991 -111991441 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1235 1099 72 0 0 chr1 85203991 85204129 -111991303 - B1_Mus1 SINE Alu -9 139 2 2 1235 925 142 0 14 chr1 85205132 85205275 -111990157 + B1_Mus1 SINE Alu 2 142 -6 2 1235 217 227 0 0 chr1 85205489 85205533 -111989899 - RSINE1 SINE B4 -109 56 13 2 1235 807 266 66 28 chr1 85205558 85205771 -111989661 - ID_B1 SINE B4 0 224 4 2 1235 514 236 6 92 chr1 85205930 85206093 -111989339 - B1F2 SINE Alu 0 149 1 2 1235 198 103 0 0 chr1 85206556 85206585 -111988847 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 1235 814 286 23 18 chr1 85206586 85206807 -111988625 - ID_B1 SINE B4 0 224 3 2 1235 324 115 308 34 chr1 85206814 85206931 -111988501 - B2_Mm2 SINE B2 0 195 47 3 1235 1252 71 65 0 chr1 85206968 85207136 -111988296 - B2_Mm1t SINE B2 -14 179 1 3 1235 328 299 11 11 chr1 85208426 85208514 -111986918 - ID SINE ID -136 88 1 3 1235 208 255 20 0 chr1 85208608 85208659 -111986773 + MIRc SINE MIR 109 160 -108 3 1235 1639 61 0 0 chr1 85210131 85210372 -111985060 + L1Md_A LINE L1 6370 6582 0 3 1235 307 344 11 55 chr1 85210764 85210901 -111984531 - LTR33B LTR ERVL -328 192 63 3 1235 275 247 214 20 chr1 85211047 85211153 -111984279 - MIRb SINE MIR -28 234 108 3 1235 4849 153 47 36 chr1 85211260 85212152 -111983280 - RMER19B LTR ERVK 0 902 1 3 1235 1045 93 0 0 chr1 85212165 85212304 -111983128 + B2_Mm2 SINE B2 15 153 -42 3 1235 677 89 11 0 chr1 85212331 85212443 -111982989 + B1_Mm SINE Alu 1 120 0 3 1235 252 0 0 0 chr1 85212477 85212505 -111982927 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1235 315 0 0 0 chr1 85212518 85212553 -111982879 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1235 321 319 78 17 chr1 85212553 85212668 -111982764 - RSINE1 SINE B4 -41 124 3 3 1235 230 241 100 33 chr1 85212903 85212963 -111982469 - ID4_ SINE ID -18 65 2 3 1235 405 223 198 86 chr1 85213307 85213469 -111981963 + B3A SINE B2 2 181 -17 3 1235 395 323 67 75 chr1 85213491 85213659 -111981773 - RLTR15 LTR ERVK -2 357 180 3 1235 1693 26 5 0 chr1 85213659 85213851 -111981581 - B2_Mm1t SINE B2 0 193 1 3 1235 395 323 67 75 chr1 85213851 85213936 -111981496 - RLTR15 LTR ERVK -180 179 106 3 1235 15132 58 3 0 chr1 85213952 85216533 -111978899 - L1Md_F2 LINE L1 -12 6570 3982 3 1235 4771 68 0 0 chr1 85216531 85217149 -111978283 - L1Md_F2 LINE L1 -3210 2673 2056 3 1235 35692 31 6 7 chr1 85217146 85225388 -111970044 + L1Md_A LINE L1 1 5586 -297 3 1235 8877 16 1 0 chr1 85225388 85226383 -111969049 + L1Md_A LINE L1 5587 6582 0 3 1235 6467 83 1 73 chr1 85226390 85228067 -111967365 - L1Md_F LINE L1 -3813 2070 521 3 1235 244 259 12 12 chr1 85228067 85228153 -111967279 - RLTR15 LTR ERVK -225 134 49 3 1235 1379 95 16 10 chr1 85228157 85228349 -111967083 - B2_Mm2 SINE B2 -1 194 2 3 1235 314 289 89 38 chr1 85228351 85228509 -111966923 - RLTR12B LTR ERVK -336 192 27 3 1235 442 153 20 55 chr1 85228492 85228593 -111966839 + B1_Mus2 SINE Alu 47 149 -1 3 1235 456 168 43 26 chr1 85228621 85228737 -111966695 + Lx9 LINE L1 7400 7517 -127 3 1235 610 147 0 44 chr1 85228749 85228848 -111966584 - MTC LTR MaLR 0 378 285 3 1235 438 247 106 37 chr1 85228848 85229037 -111966395 - RMER10B LTR ERVL -2 396 195 3 1235 855 192 82 10 chr1 85229621 85229816 -111965616 - B3 SINE B2 -1 215 7 3 1235 1770 104 3 18 chr1 85230101 85230386 -111965046 - RMER19B LTR ERVK -3 899 619 3 1235 1665 157 133 6 chr1 85230378 85230717 -111964715 - RMER19B LTR ERVK -516 386 5 3 1235 716 82 16 47 chr1 85230850 85230978 -111964454 - RMER19B LTR ERVK 0 902 779 3 1235 1585 141 0 22 chr1 85230962 85231231 -111964201 - MTC LTR MaLR -158 263 1 3 1235 7651 166 23 14 chr1 85232130 85233922 -111961510 - Lx5 LINE L1 0 7050 5238 3 1235 2565 185 65 128 chr1 85233922 85234796 -111960636 - RLTR25A LTR ERVK -2 1101 283 3 1235 1108 197 13 0 chr1 85234796 85235024 -111960408 - Lx5 LINE L1 -5869 1217 987 3 1235 494 244 30 60 chr1 85235316 85235482 -111959950 + L1M3 LINE L1 5440 5600 -571 3 1235 1136 88 0 0 chr1 85235484 85235631 -111959801 + B1_Mus2 SINE Alu 1 147 0 3 1235 357 86 0 0 chr1 85235634 85235692 -111959740 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 3 1235 871 114 57 7 chr1 85235739 85235880 -111959552 + B2_Mm1a SINE B2 3 150 -43 3 1235 369 0 0 0 chr1 85235881 85235922 -111959510 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 1235 374 242 48 40 chr1 85235924 85236049 -111959383 + L1M3 LINE L1 5606 5731 -458 3 1235 290 312 119 0 chr1 85236051 85236160 -111959272 + MTEa LTR MaLR 20 141 -218 3 1235 1467 224 91 13 chr1 85236169 85236618 -111958814 - RMER5 LTR ERV1 -7 527 44 3 1235 439 226 73 0 chr1 85236729 85236853 -111958579 + MTEa LTR MaLR 232 364 -15 3 1235 2118 271 86 105 chr1 85236851 85237822 -111957610 + MTEa-int LTR MaLR 8 959 -621 3 1235 724 152 121 0 chr1 85238818 85238950 -111956482 + B1_Mus1 SINE Alu 1 148 0 3 1235 1772 60 35 39 chr1 85239037 85239297 -111956135 + L1Md_F2 LINE L1 6324 6582 0 3 1235 616 242 119 21 chr1 85239334 85239528 -111955904 + MTEa-int LTR MaLR 957 1169 -411 3 1235 297 295 97 41 chr1 85240055 85240200 -111955232 + Lx8 LINE L1 7243 7395 -78 3 1235 292 260 0 0 chr1 85240732 85240805 -111954627 + G-rich Low_complexity Low_complexity 1 73 0 3 1235 968 164 4 4 chr1 85241129 85241356 -111954076 + GA-rich Low_complexity Low_complexity 1 227 0 3 1235 896 194 0 40 chr1 85241664 85241863 -111953569 - B3 SINE B2 -15 201 11 3 1235 476 266 62 35 chr1 85242592 85242736 -111952696 + B1_Mur1 SINE Alu 1 148 -1 3 1235 627 71 0 0 chr1 85242751 85242836 -111952596 + (GAAA)n Simple_repeat Simple_repeat 3 87 0 3 1235 355 257 0 0 chr1 85242847 85242921 -111952511 - PB1D9 SINE Alu -46 74 1 3 1235 26 30 0 0 chr1 85243257 85243290 -111952142 + AT_rich Low_complexity Low_complexity 1 33 0 3 1235 664 180 0 66 chr1 85243909 85244046 -111951386 + B1_Mur4 SINE Alu 1 128 -22 3 1235 205 0 114 0 chr1 85244046 85244081 -111951351 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 3 1235 559 314 12 6 chr1 85245530 85245690 -111949742 - RSINE1 SINE B4 -1 164 4 3 1235 1199 68 0 0 chr1 85246558 85246705 -111948727 + B1_Mus2 SINE Alu 1 147 0 3 1235 213 39 0 0 chr1 85246705 85246731 -111948701 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1235 594 263 35 70 chr1 85249058 85249258 -111946174 + B3A SINE B2 6 198 0 3 1235 1101 73 0 24 chr1 85251252 85251420 -111944012 + B2_Mm2 SINE B2 1 164 -31 3 1235 842 280 9 9 chr1 85251904 85252120 -111943312 + B3 SINE B2 1 216 0 3 1235 201 179 0 25 chr1 85252662 85252702 -111942730 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 1235 533 258 8 16 chr1 85252732 85252854 -111942578 - RSINE1 SINE B4 -18 147 27 3 1235 319 305 23 8 chr1 85253542 85253598 -111941834 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 3 1235 842 121 0 6 chr1 85253598 85253756 -111941676 + (TAGA)n Simple_repeat Simple_repeat 1 157 0 3 1235 319 305 23 8 chr1 85253756 85253828 -111941604 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 3 1235 324 0 0 0 chr1 85253846 85253882 -111941550 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1235 517 158 23 41 chr1 85254770 85254941 -111940491 + GA-rich Low_complexity Low_complexity 2 169 0 3 1235 340 268 17 23 chr1 85254974 85255150 -111940282 + GA-rich Low_complexity Low_complexity 4 178 0 3 1235 207 261 0 0 chr1 85255191 85255237 -111940195 + GA-rich Low_complexity Low_complexity 1 46 0 3 1235 1198 54 0 0 chr1 85256066 85256213 -111939219 + B1_Mus2 SINE Alu 1 147 0 3 1235 23 0 0 0 chr1 85257562 85257585 -111937847 + AT_rich Low_complexity Low_complexity 1 23 0 3 1235 449 296 35 14 chr1 85257620 85257764 -111937668 - B1_Mur1 SINE Alu 0 149 3 3 1235 1068 222 66 134 chr1 85257769 85258164 -111937268 + MTE2a LTR MaLR 6 373 -6 3 1235 1069 50 0 0 chr1 85258173 85258312 -111937120 + B1_Mm SINE Alu 9 147 0 3 1235 201 74 0 0 chr1 85258315 85258342 -111937090 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 1235 427 252 104 48 chr1 85258865 85258990 -111936442 - RSINE1 SINE B4 -31 134 3 3 1235 299 186 13 67 chr1 85258990 85259047 -111936385 + B1F SINE Alu 91 143 -6 3 1235 234 220 0 78 chr1 85258991 85259055 -111936377 + ID_B1 SINE B4 166 224 0 3 1235 378 308 39 0 chr1 85259090 85259194 -111936238 + RSINE1 SINE B4 3 110 -55 3 1235 28 29 0 0 chr1 85259327 85259362 -111936070 + AT_rich Low_complexity Low_complexity 1 35 0 3 1235 629 267 111 57 chr1 85259380 85259714 -111935718 - Lx9 LINE L1 -27 7617 7266 3 1235 732 315 77 29 chr1 85259799 85260253 -111935179 + Charlie1b DNA MER1_type 8 483 -40 3 1235 624 188 0 57 chr1 85260254 85260378 -111935054 + B1_Mur1 SINE Alu 6 122 -27 3 1235 25 31 0 0 chr1 85260474 85260506 -111934926 + AT_rich Low_complexity Low_complexity 1 32 0 3 1235 683 290 54 5 chr1 85260577 85260761 -111934671 - B4A SINE B4 -53 239 47 3 1235 552 68 0 0 chr1 85261075 85261148 -111934284 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1235 248 215 107 0 chr1 85261148 85261269 -111934163 + L1MCa LINE L1 2163 2296 -4212 3 1235 551 264 6 31 chr1 85261367 85261527 -111933905 + RSINE1 SINE B4 2 157 -8 3 1235 320 309 187 38 chr1 85261734 85262151 -111933281 + L1MCa LINE L1 3310 3788 -2533 3 1235 471 276 34 93 chr1 85262200 85262404 -111933028 - B3A SINE B2 0 198 7 3 1235 225 0 0 0 chr1 85262408 85262433 -111932999 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1235 726 75 0 0 chr1 85262433 85262538 -111932894 + (GA)n Simple_repeat Simple_repeat 1 106 0 3 1235 4366 26 2 0 chr1 85262972 85263464 -111931968 + MT2_Mm LTR ERVL 1 493 0 3 1235 20007 17 9 1 chr1 85263464 85263558 -111931874 + MERVL-int LTR ERVL 1 112 -5373 3 1235 5118 40 0 0 chr1 85263558 85264159 -111931273 - L1Md_T LINE L1 0 6582 5982 3 1235 20007 17 9 1 chr1 85264159 85266302 -111929130 + MERVL-int LTR ERVL 113 2256 -3229 3 1235 1600 22 0 0 chr1 85266298 85266480 -111928952 - MERVL-int LTR ERVL -3934 1551 1370 3 1235 510 31 0 0 chr1 85268122 85268186 -111927246 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1235 711 54 0 0 chr1 85269255 85269347 -111926085 + (GGGGA)n Simple_repeat Simple_repeat 2 93 0 3 1235 226 244 73 0 chr1 85269827 85269909 -111925523 - L1M LINE L1 -777 5347 5260 3 1235 462 185 176 0 chr1 85269949 85270068 -111925364 - B1_Mus2 SINE Alu -7 140 1 3 1235 317 239 14 0 chr1 85270654 85270725 -111924707 + ID4 SINE ID 8 79 -4 3 1235 203 169 51 0 chr1 85272104 85272163 -111923269 + (CACTG)n Simple_repeat Simple_repeat 3 64 0 3 1235 286 247 65 0 chr1 85272166 85272243 -111923189 - PB1D9 SINE Alu -36 84 3 3 1235 489 147 0 144 chr1 85272243 85272338 -111923094 - MT2B LTR ERVL -342 259 181 3 1235 730 74 27 27 chr1 85272322 85272433 -111922999 - RMER6C LTR ERVK -579 111 1 3 1235 186 43 0 0 chr1 85272928 85272951 -111922481 + (TTCTG)n Simple_repeat Simple_repeat 4 26 0 3 1235 767 158 14 57 chr1 85272952 85273093 -111922339 - B1_Mus2 SINE Alu -12 135 1 3 1235 533 272 27 7 chr1 85273132 85273280 -111922152 - RSINE1 SINE B4 -13 152 2 3 1235 350 278 50 40 chr1 85273788 85273889 -111921543 - PB1D7 SINE Alu -10 110 9 4 1235 353 169 0 25 chr1 85273997 85274076 -111921356 + GA-rich Low_complexity Low_complexity 3 79 0 4 1235 4734 58 44 2 chr1 85274633 85275249 -111920183 - L1_Mus3 LINE L1 -4 6634 5993 4 1235 648 89 0 0 chr1 85275510 85275611 -111919821 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 1235 301 268 0 9 chr1 85275700 85275792 -111919640 - ID2 SINE ID -64 88 1 4 1235 774 32 0 0 chr1 85276153 85276246 -111919186 + (GAA)n Simple_repeat Simple_repeat 3 95 0 4 1235 1139 82 0 0 chr1 85277267 85277414 -111918018 + B1_Mus2 SINE Alu 1 147 0 4 1235 183 114 0 0 chr1 85277429 85277464 -111917968 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1235 1145 205 19 9 chr1 85277704 85277916 -111917516 + B3 SINE B2 2 215 -1 4 1235 606 284 20 0 chr1 85278567 85278715 -111916717 + RSINE1 SINE B4 3 153 -12 4 1235 205 0 114 0 chr1 85280176 85280211 -111915221 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1235 663 180 0 72 chr1 85280211 85280349 -111915083 - B1_Mur4 SINE Alu -22 128 1 4 1235 385 247 0 0 chr1 85281354 85281439 -111913993 - MurSatRep1 Unknown Unknown -1839 298 214 4 1235 456 19 0 0 chr1 85281454 85281507 -111913925 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 4 1235 506 259 62 35 chr1 85281543 85281687 -111913745 - B1_Mur1 SINE Alu -1 148 1 4 1235 1017 147 5 45 chr1 85282408 85282607 -111912825 + B3 SINE B2 11 201 -15 4 1235 863 186 4 9 chr1 85282909 85283147 -111912285 + CT-rich Low_complexity Low_complexity 1 236 0 4 1235 231 215 0 0 chr1 85283493 85283558 -111911874 + C-rich Low_complexity Low_complexity 1 65 0 4 1235 313 288 97 41 chr1 85284090 85284235 -111911197 - Lx8 LINE L1 -78 7395 7243 4 1235 597 238 124 21 chr1 85284762 85284955 -111910477 - MTEa-int LTR MaLR -411 1169 957 4 1235 1766 53 47 31 chr1 85284995 85285250 -111910182 - L1Md_F2 LINE L1 0 6582 6324 4 1235 699 159 121 0 chr1 85285337 85285469 -111909963 - B1_Mus1 SINE Alu 0 148 1 4 1235 2185 272 80 100 chr1 85286459 85287430 -111908002 - MTEa-int LTR MaLR -621 959 8 4 1235 439 234 73 0 chr1 85287428 85287552 -111907880 - MTEa LTR MaLR -15 364 232 4 1235 1476 227 89 11 chr1 85287663 85288112 -111907320 + RMER5 LTR ERV1 44 527 -7 4 1235 278 321 119 0 chr1 85288121 85288230 -111907202 - MTEa LTR MaLR -218 141 20 4 1235 406 252 41 25 chr1 85288232 85288354 -111907078 - L1M3 LINE L1 -458 5731 5608 4 1235 414 0 0 0 chr1 85288358 85288404 -111907028 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1235 982 111 7 7 chr1 85288404 85288553 -111906879 - B2_Mm1a SINE B2 -38 155 7 4 1235 226 167 19 0 chr1 85288599 85288653 -111906779 + T-rich Low_complexity Low_complexity 6 60 0 4 1235 1245 48 0 0 chr1 85288653 85288800 -111906632 - B1_Mus2 SINE Alu 0 147 1 4 1235 475 250 30 66 chr1 85288802 85288969 -111906463 - L1M3 LINE L1 -571 5600 5440 4 1235 1220 180 17 1 chr1 85289250 85289498 -111905934 + Lx5 LINE L1 984 1233 -6495 4 1235 2600 173 65 145 chr1 85289502 85290373 -111905059 + RLTR25A LTR ERVK 302 1103 0 4 1235 7758 163 22 15 chr1 85290374 85292165 -111903267 + Lx5 LINE L1 5241 7050 0 4 1235 1552 138 8 22 chr1 85293063 85293330 -111902102 + MTC LTR MaLR 1 263 -158 4 1235 716 82 16 47 chr1 85293314 85293442 -111901990 + RMER19B LTR ERVK 779 902 0 4 1235 1578 160 138 6 chr1 85293575 85293908 -111901524 + RMER19B LTR ERVK 5 381 -521 4 1235 1682 121 3 18 chr1 85293905 85294190 -111901242 + RMER19B LTR ERVK 619 899 -3 4 1235 841 192 82 10 chr1 85294475 85294670 -111900762 + B3 SINE B2 7 215 -1 4 1235 479 224 101 32 chr1 85295254 85295443 -111899989 + RMER10B LTR ERVL 195 396 -2 4 1235 600 144 0 0 chr1 85295445 85295542 -111899890 + MTC LTR MaLR 282 378 0 4 1235 236 319 0 0 chr1 85295544 85295616 -111899816 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 4 1235 201 74 0 0 chr1 85295666 85295693 -111899739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1235 442 153 20 55 chr1 85295706 85295807 -111899625 - B1_Mus2 SINE Alu -1 149 47 4 1235 328 283 89 38 chr1 85295790 85295948 -111899484 + RLTR12B LTR ERVK 27 192 -336 4 1235 1149 113 16 11 chr1 85295954 85296142 -111899290 + B2_Mm2 SINE B2 6 194 -1 4 1235 289 235 12 12 chr1 85296146 85296232 -111899200 + RLTR15 LTR ERVK 49 134 -225 4 1235 31648 75 1 16 chr1 85296232 85301093 -111894339 + L1Md_F LINE L1 521 5304 -579 4 1235 256 329 12 12 chr1 85301256 85301336 -111894096 + ID4_ SINE ID 1 80 -3 4 1235 1263 65 65 0 chr1 85302637 85302805 -111892627 + B2_Mm1t SINE B2 1 179 -14 4 1235 295 115 308 34 chr1 85302842 85302959 -111892473 + B2_Mm2 SINE B2 47 195 0 4 1235 817 286 23 18 chr1 85302966 85303187 -111892245 + ID_B1 SINE B4 3 224 0 4 1235 207 100 0 0 chr1 85303187 85303217 -111892215 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1235 496 250 6 81 chr1 85303680 85303841 -111891591 + B1F2 SINE Alu 1 149 0 4 1235 216 0 0 0 chr1 85303841 85303865 -111891567 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 4 1235 711 281 71 0 chr1 85304027 85304223 -111891209 + ID_B1 SINE B4 15 224 0 4 1235 220 204 0 0 chr1 85304248 85304292 -111891140 + RSINE1 SINE B4 13 56 -109 4 1235 951 129 0 14 chr1 85304511 85304653 -111890779 - B1_Mus1 SINE Alu -7 141 2 4 1235 1235 48 0 0 chr1 85305650 85305797 -111889635 + B1_Mus1 SINE Alu 2 148 0 4 1235 216 67 0 0 chr1 85305797 85305827 -111889605 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1235 597 28 0 0 chr1 85305898 85305969 -111889463 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1235 2065 128 111 19 chr1 85306359 85306718 -111888714 + ORR1B1 LTR MaLR 1 392 -2 4 1235 236 289 37 62 chr1 85306995 85307076 -111888356 + PB1D10 SINE Alu 33 111 -6 4 1235 518 115 219 81 chr1 85307087 85307210 -111888222 + B1_Mur4 SINE Alu 1 140 -10 4 1235 786 130 0 0 chr1 85307468 85307599 -111887833 + (GA)n Simple_repeat Simple_repeat 2 132 0 4 1235 876 225 80 0 chr1 85307633 85307833 -111887599 + B3 SINE B2 1 216 0 4 1235 288 308 76 9 chr1 85307868 85307973 -111887459 + PB1D10 SINE Alu 1 112 -5 4 1235 275 214 0 0 chr1 85308004 85308060 -111887372 + B2_Mm2 SINE B2 1 56 -139 4 1235 200 227 45 0 chr1 85309203 85309247 -111886185 + polypurine Low_complexity Low_complexity 4 49 0 4 1235 450 256 132 0 chr1 85309259 85309380 -111886052 + RSINE1 SINE B4 19 155 -10 4 1235 279 79 0 0 chr1 85309389 85309427 -111886005 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1235 776 40 10 0 chr1 85309466 85309566 -111885866 + (GGGA)n Simple_repeat Simple_repeat 3 103 0 4 1235 773 30 10 0 chr1 85309872 85309972 -111885460 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 4 1235 21 0 0 0 chr1 85310317 85310338 -111885094 + AT_rich Low_complexity Low_complexity 1 21 0 4 1235 771 175 29 0 chr1 85310410 85310547 -111884885 + B1_Mur3 SINE Alu 3 143 -6 4 1235 241 329 0 13 chr1 85310803 85310880 -111884552 + L2a LINE L2 3341 3416 -10 4 1235 355 280 19 101 chr1 85311374 85311533 -111883899 + RSINE1 SINE B4 18 163 -2 4 1235 910 250 0 23 chr1 85311600 85311821 -111883611 + B3 SINE B2 1 216 0 4 1235 312 128 330 9 chr1 85311825 85311934 -111883498 - B2_Mm2 SINE B2 -5 190 47 4 1235 1285 97 11 0 chr1 85311996 85312172 -111883260 - B2_Mm1a SINE B2 -14 179 2 4 1235 207 0 0 0 chr1 85312248 85312271 -111883161 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1235 1225 41 7 0 chr1 85312279 85312425 -111883007 - B1_Mm SINE Alu 0 147 1 4 1235 1190 202 5 18 chr1 85312565 85312782 -111882650 + B3 SINE B2 1 214 -2 4 1235 982 187 0 62 chr1 85313322 85313516 -111881916 + B3A SINE B2 1 182 -16 4 1235 183 139 0 0 chr1 85313516 85313552 -111881880 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1235 420 294 8 25 chr1 85314001 85314123 -111881309 + B4A SINE B4 173 292 0 4 1235 982 283 60 29 chr1 85314213 85314697 -111880735 + L1MB7 LINE L1 5595 6093 -91 4 1235 1685 195 74 11 chr1 85314861 85315239 -111880193 + MTD LTR MaLR 6 407 -12 4 1235 185 0 40 0 chr1 85315315 85315340 -111880092 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1235 2571 75 60 0 chr1 85316287 85316671 -111878761 - MTB_Mm LTR MaLR 0 407 1 4 1235 362 246 115 0 chr1 85316692 85316822 -111878610 + L1M2 LINE L1 3816 3960 -2183 4 1235 605 38 12 0 chr1 85316964 85317044 -111878388 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 4 1235 556 264 176 0 chr1 85317085 85317267 -111878165 - B3 SINE B2 -1 215 2 4 1235 522 172 21 0 chr1 85317287 85317380 -111878052 + B1_Mur3 SINE Alu 44 138 -11 4 1235 615 242 45 70 chr1 85317495 85317695 -111877737 + B3 SINE B2 21 215 -1 4 1235 1909 176 8 42 chr1 85318027 85318412 -111877020 - ORR1C1 LTR MaLR 0 378 7 4 1235 1055 192 33 14 chr1 85318942 85319153 -111876279 + B3 SINE B2 1 215 -1 4 1235 381 305 97 71 chr1 85319177 85319445 -111875987 + B4A SINE B4 2 276 -16 4 1235 819 149 12 6 chr1 85319449 85319618 -111875814 + (TA)n Simple_repeat Simple_repeat 2 171 0 4 1235 283 286 50 66 chr1 85319650 85319848 -111875584 - RLTR46 LTR ERVK 0 320 126 4 1235 295 238 12 18 chr1 85319973 85320130 -111875302 + (CA)n Simple_repeat Simple_repeat 2 157 0 4 1235 2676 43 61 6 chr1 85320130 85320458 -111874974 - ORR1A1 LTR MaLR 0 346 1 4 1235 295 238 12 18 chr1 85320458 85320467 -111874965 + (CA)n Simple_repeat Simple_repeat 2 10 0 4 1235 423 126 10 21 chr1 85320504 85320601 -111874831 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1235 326 289 88 0 chr1 85320889 85321003 -111874429 + PB1 SINE Alu 2 125 -2 4 1235 303 258 0 0 chr1 85321013 85321075 -111874357 + ID4_ SINE ID 2 63 -20 4 1235 340 278 25 44 chr1 85321793 85321951 -111873481 + RSINE1 SINE B4 3 157 -8 4 1235 695 235 44 0 chr1 85322179 85322345 -111873087 + B3 SINE B2 1 175 -23 5 1235 249 159 0 0 chr1 85322362 85322406 -111873026 + (CACG)n Simple_repeat Simple_repeat 2 45 0 5 1235 657 219 0 93 chr1 85322438 85322599 -111872833 + B1_Mur1 SINE Alu 3 148 -1 5 1235 322 302 142 8 chr1 85322722 85322842 -111872590 + B1F SINE Alu 5 140 -9 5 1235 256 280 106 64 chr1 85322842 85322856 -111872576 + ID_B1 SINE B4 119 224 0 5 1235 864 117 0 0 chr1 85323508 85323671 -111871761 + (TC)n Simple_repeat Simple_repeat 2 164 0 5 154 2386 156 50 24 chr1 85327525 85327986 -111867446 + RMER1B Other Other 590 1062 -4 5 1236 534 235 61 0 chr1 85328799 85328931 -111866501 - B1F SINE Alu -1 148 9 5 1236 226 271 34 0 chr1 85328879 85328938 -111866494 - B4A SINE B4 -147 145 85 5 1236 342 0 0 0 chr1 85329391 85329429 -111866003 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1236 339 176 15 0 chr1 85329602 85329670 -111865762 + B4A SINE B4 2 70 -222 5 1236 210 282 0 60 chr1 85329670 85329685 -111865747 + BC1_Mm scRNA scRNA 2 79 -73 5 1236 205 329 0 12 chr1 85329790 85329870 -111865562 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1236 240 292 15 0 chr1 85329883 85329948 -111865484 + B3A SINE B2 1 66 -132 5 1236 441 0 0 0 chr1 85330018 85330067 -111865365 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1236 688 209 0 29 chr1 85330081 85330219 -111865213 - B1_Mus2 SINE Alu -9 138 5 5 1236 405 0 0 0 chr1 85330255 85330300 -111865132 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1236 224 254 99 0 chr1 85330445 85330516 -111864916 - PB1D7 SINE Alu 0 120 43 5 1236 33754 21 3 0 chr1 85330517 85336869 -111858563 - L1Md_A LINE L1 0 6582 214 5 1236 1960 164 33 19 chr1 85338882 85339243 -111856189 + ORR1B2 LTR MaLR 2 367 0 5 1236 2350 145 2 18 chr1 85339746 85340139 -111855293 + ORR1B1 LTR MaLR 1 387 -7 5 1236 288 222 16 0 chr1 85340546 85340609 -111854823 + LTR53 LTR ERVL 3 66 -453 5 1236 501 32 0 0 chr1 85340712 85340775 -111854657 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1236 366 244 128 0 chr1 85341098 85341184 -111854248 + ID_B1 SINE B4 121 217 -7 5 1236 558 233 8 8 chr1 85342723 85342853 -111852579 - ID_B1 SINE B4 -8 216 87 5 1251 676 284 82 94 chr1 87343980 87344310 -109851122 - RMER20B LTR ERVK -101 415 90 1 1251 442 254 25 34 chr1 87344442 87344560 -109850872 + RSINE1 SINE B4 43 159 -6 2 1251 282 236 47 86 chr1 87344885 87345093 -109850339 + RMER17D LTR ERVK 203 404 -485 3 1251 189 0 0 0 chr1 87345093 87345114 -109850318 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1251 282 236 47 86 chr1 87345114 87345137 -109850295 + RMER17D LTR ERVK 405 424 -465 3 1251 180 254 87 29 chr1 87345373 87345442 -109849990 - MIRb SINE MIR -150 118 46 5 1251 198 91 0 0 chr1 87345647 87345680 -109849752 + (C)n Simple_repeat Simple_repeat 1 33 0 6 1251 21 0 0 0 chr1 87345770 87345791 -109849641 + AT_rich Low_complexity Low_complexity 1 21 0 7 1251 1266 139 77 5 chr1 87345926 87346135 -109849297 + URR1B DNA MER1_type 1 224 -1 8 1251 182 122 0 68 chr1 87346368 87346389 -109849043 + A-rich Low_complexity Low_complexity 5 24 0 9 1251 1157 62 7 0 chr1 87346389 87346535 -109848897 + B1_Mus1 SINE Alu 2 148 0 1 1251 182 122 0 68 chr1 87346535 87346557 -109848875 + A-rich Low_complexity Low_complexity 25 45 0 1 1251 213 39 0 0 chr1 87346561 87346587 -109848845 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 1 1251 1349 61 0 6 chr1 87346587 87346768 -109848664 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 1 1251 1254 95 0 0 chr1 87346779 87346958 -109848474 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 1 1251 542 215 80 140 chr1 87347012 87347212 -109848220 - MTE2b LTR MaLR -190 189 2 1 1251 620 272 43 74 chr1 87347359 87347589 -109847843 - RLTR33 LTR ERVK -27 651 429 1 1251 553 200 0 0 chr1 87348945 87349050 -109846382 - PB1D9 SINE Alu -6 114 10 1 1251 405 165 0 76 chr1 87349065 87349157 -109846275 - L1MB4 LINE L1 -350 5830 5746 1 1251 507 274 101 22 chr1 87349181 87349319 -109846113 - RSINE1 SINE B4 -16 149 1 1 1251 1158 261 38 73 chr1 87349348 87349716 -109845716 - ORR1E LTR MaLR -4 355 1 2 1251 2094 259 66 24 chr1 87349716 87350263 -109845169 - ORR1E-int LTR MaLR -53 1527 957 2 1251 1850 52 31 31 chr1 87350301 87350560 -109844872 - L1Md_F2 LINE L1 0 6582 6324 2 1251 728 167 121 0 chr1 87350647 87350779 -109844653 - B1_Mus1 SINE Alu 0 148 1 2 1251 2546 264 81 100 chr1 87351772 87352750 -109842682 - ORR1E-int LTR MaLR -621 959 1 2 1251 484 252 61 24 chr1 87352727 87352903 -109842529 - ORR1E LTR MaLR -3 376 209 2 1251 1670 216 101 14 chr1 87352976 87353421 -109842011 + RMER5 LTR ERV1 44 527 -7 2 1251 290 312 119 0 chr1 87353430 87353539 -109841893 - ORR1E LTR MaLR -218 141 20 2 1251 430 244 41 25 chr1 87353541 87353663 -109841769 - L1MB4 LINE L1 -458 5731 5608 1 1251 234 0 0 0 chr1 87353667 87353693 -109841739 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1251 1047 105 7 7 chr1 87353693 87353842 -109841590 - B2_Mm1a SINE B2 -38 155 7 2 1251 208 135 0 0 chr1 87353888 87353925 -109841507 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 2 1251 1255 48 0 0 chr1 87353925 87354072 -109841360 - B1_Mus2 SINE Alu 0 147 1 2 1251 491 237 30 66 chr1 87354074 87354241 -109841191 - L1MB4 LINE L1 -571 5600 5440 1 1251 1070 199 13 0 chr1 87354530 87354761 -109840671 + L1_Mur2 LINE L1 610 843 -5869 2 1251 2932 172 65 146 chr1 87354761 87355654 -109839778 + RLTR25A LTR ERVK 283 1103 0 2 1251 7998 157 21 13 chr1 87355654 87357446 -109837986 + Lx5 LINE L1 5240 7050 0 3 1251 1707 155 14 29 chr1 87358348 87358676 -109836756 + MTC LTR MaLR 1 335 -72 3 1251 764 90 16 47 chr1 87358601 87358729 -109836703 + RMER19B LTR ERVK 779 902 0 3 1251 1763 161 136 6 chr1 87358855 87359193 -109836239 + RMER19B LTR ERVK 5 386 -516 3 1251 1846 96 7 38 chr1 87359185 87359478 -109835954 + RMER19B LTR ERVK 619 902 0 3 1251 891 202 82 10 chr1 87359755 87359950 -109835482 + B3 SINE B2 7 215 -1 3 1251 542 235 101 27 chr1 87360534 87360722 -109834710 + RMER10B LTR ERVL 195 396 -2 3 1251 650 156 0 44 chr1 87360722 87360821 -109834611 + MTC LTR MaLR 285 378 0 3 1251 418 176 40 48 chr1 87360833 87360945 -109834487 - Lx9 LINE L1 -127 7517 7405 3 1251 201 74 0 0 chr1 87360945 87360972 -109834460 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1251 418 176 40 48 chr1 87360972 87360984 -109834448 - Lx9 LINE L1 -240 7404 7394 3 1251 483 204 60 77 chr1 87360985 87361102 -109834330 - B1_Mus1 SINE Alu -1 147 33 3 1251 443 253 69 120 chr1 87361069 87361229 -109834203 + RLTR12B LTR ERVK 27 189 -339 3 1251 1376 95 16 10 chr1 87361229 87361421 -109834011 + B2_Mm2 SINE B2 2 194 -1 4 1251 443 247 14 16 chr1 87361421 87361511 -109833921 + RLTR12B LTR ERVK 190 231 -297 3 1251 16399 87 45 26 chr1 87361511 87364722 -109830710 + L1Md_F LINE L1 114 3388 -2495 4 1251 2280 103 240 46 chr1 87364722 87365181 -109830251 - RLTR6_Mm LTR ERV1 -70 584 37 4 1251 237 228 196 56 chr1 87365183 87365290 -109830142 - RLTR6_Mm LTR ERV1 -532 122 1 4 1251 69066 15 13 0 chr1 87365290 87372974 -109822458 - RLTR6-int LTR ERV1 0 7778 1 4 1251 2361 107 229 46 chr1 87372974 87373455 -109821977 - RLTR6_Mm LTR ERV1 -49 605 37 4 1251 267 208 196 56 chr1 87373457 87373564 -109821868 - RLTR6_Mm LTR ERV1 -532 122 1 4 1251 14958 70 1 0 chr1 87373564 87375483 -109819949 + L1Md_F2 LINE L1 3385 5304 -579 4 1251 2549 55 6 3 chr1 87376080 87376418 -109819014 + L1Md_F2 LINE L1 5278 5615 -2380 4 1251 8300 46 0 7 chr1 87376418 87377421 -109818011 + L1Md_F2 LINE L1 5587 6582 0 4 1251 411 333 79 38 chr1 87377422 87377662 -109817770 + RLTR12B LTR ERVK 108 357 -2 3 1251 414 223 198 86 chr1 87377684 87377846 -109817586 - B3A SINE B2 -17 181 2 4 1251 218 229 122 20 chr1 87378212 87378261 -109817171 + ID4_ SINE ID 2 55 -28 4 1251 317 333 70 9 chr1 87378507 87378622 -109816810 + RSINE1 SINE B4 3 124 -41 4 1251 567 0 0 0 chr1 87378622 87378685 -109816747 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1251 212 0 0 35 chr1 87378698 87378727 -109816705 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1251 716 92 101 0 chr1 87378752 87378861 -109816571 - PB1D9 SINE Alu 0 120 1 5 1251 1054 86 0 0 chr1 87378888 87379027 -109816405 - B2_Mm2 SINE B2 -42 153 15 5 1251 4835 155 47 36 chr1 87379040 87379932 -109815500 + RMER19B LTR ERVK 1 902 0 5 1251 297 236 214 20 chr1 87380037 87380143 -109815289 + MIRb SINE MIR 108 234 -28 5 1251 318 344 9 53 chr1 87380290 87380427 -109815005 + LTR33B LTR ERVL 63 192 -328 5 1251 208 255 20 0 chr1 87382282 87382333 -109813099 - MIRc SINE MIR -108 160 109 5 1251 360 264 11 11 chr1 87382417 87382505 -109812927 + ID SINE ID 1 88 -136 5 1251 3520 28 0 0 chr1 87382752 87383148 -109812284 + MTA_Mm LTR MaLR 1 396 0 5 1251 9171 37 3 4 chr1 87383148 87384247 -109811185 + MTA_Mm-int LTR MaLR 1 1098 0 5 1251 3547 25 0 0 chr1 87384247 87384643 -109810789 + MTA_Mm LTR MaLR 1 396 0 5 1251 390 42 0 0 chr1 87385032 87385080 -109810352 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1251 359 323 18 18 chr1 87385098 87385208 -109810224 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 6 1251 1170 78 0 0 chr1 87385208 87385388 -109810044 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1251 359 323 18 18 chr1 87385388 87385444 -109809988 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 6 1251 568 258 8 16 chr1 87386133 87386255 -109809177 + RSINE1 SINE B4 27 147 -18 6 1251 831 276 9 14 chr1 87386862 87387079 -109808353 - B3 SINE B2 0 216 1 6 1251 1180 67 0 24 chr1 87387563 87387731 -109807701 - B2_Mm2 SINE B2 -31 164 1 6 1251 584 257 35 70 chr1 87389729 87389930 -109805502 - B3A SINE B2 0 198 5 6 1251 233 186 92 79 chr1 87390181 87390257 -109805175 - Lx8 LINE L1 -28 7445 7369 6 1251 315 0 0 0 chr1 87391995 87392030 -109803402 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1251 1183 68 0 0 chr1 87392030 87392176 -109803256 - B1_Mus2 SINE Alu 0 147 2 7 1251 258 256 42 62 chr1 87392582 87392678 -109802754 + ID_B1 SINE B4 122 215 -9 7 1251 372 263 0 0 chr1 87392701 87392777 -109802655 + ID4 SINE ID 5 80 -3 7 1251 218 380 80 0 chr1 87393037 87393150 -109802282 - B4A SINE B4 -130 162 41 7 1251 504 0 0 0 chr1 87393386 87393442 -109801990 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1251 265 98 32 32 chr1 87393442 87393505 -109801927 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 7 1251 719 285 75 39 chr1 87393632 87393913 -109801519 + B4A SINE B4 2 292 0 7 1251 21 36 0 0 chr1 87393993 87394021 -109801411 + AT_rich Low_complexity Low_complexity 1 28 0 7 1251 297 51 0 0 chr1 87394063 87394102 -109801330 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1251 414 0 0 0 chr1 87394102 87394147 -109801285 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 1251 213 39 0 0 chr1 87397463 87397489 -109797943 + (TTA)n Simple_repeat Simple_repeat 2 27 0 8 1251 897 313 79 26 chr1 87398555 87399120 -109796312 - L1MB5 LINE L1 -196 5978 5350 8 1251 1499 63 16 0 chr1 87400103 87400294 -109795138 + B2_Mm2 SINE B2 2 195 0 8 1251 4925 112 17 16 chr1 87400384 87401139 -109794293 - RMER6A LTR ERVK 0 756 1 8 1251 616 232 1 2 chr1 87401255 87401391 -109794041 + B1_Mur3 SINE Alu 13 149 0 8 1251 1125 249 97 29 chr1 87401528 87401908 -109793524 - MTD LTR MaLR -13 406 1 8 1251 304 250 121 30 chr1 87402087 87402186 -109793246 + B1_Mus1 SINE Alu 6 113 -35 8 1251 654 163 14 7 chr1 87402198 87402340 -109793092 + GA-rich Low_complexity Low_complexity 3 145 0 8 1251 567 225 8 8 chr1 87404776 87404906 -109790526 + ID_B1 SINE B4 87 216 -8 8 1251 366 244 128 0 chr1 87405736 87405822 -109789610 - ID_B1 SINE B4 -7 217 121 8 1251 192 40 0 0 chr1 87406145 87406170 -109789262 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1251 288 222 16 0 chr1 87406273 87406336 -109789096 - LTR53 LTR ERVL -453 66 3 9 1251 2400 145 3 10 chr1 87406743 87407133 -109788299 - ORR1B1 LTR MaLR -7 387 1 9 1251 1988 159 36 19 chr1 87407638 87407998 -109787434 - ORR1B2 LTR MaLR 0 367 2 9 1251 262 330 62 0 chr1 87409957 87410069 -109785363 + PB1D7 SINE Alu 2 120 0 9 1251 351 0 0 0 chr1 87410214 87410253 -109785179 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1251 671 224 0 29 chr1 87410289 87410427 -109785005 + B1_Mus2 SINE Alu 5 138 -9 9 1251 333 0 0 0 chr1 87410436 87410473 -109784959 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1251 260 301 14 0 chr1 87410535 87410608 -109784824 - B3A SINE B2 -124 74 1 9 1251 216 325 0 12 chr1 87410617 87410701 -109784731 + (TG)n Simple_repeat Simple_repeat 2 84 0 9 1251 311 264 11 0 chr1 87410802 87410889 -109784543 - B4A SINE B4 -202 90 3 1 1251 534 235 61 0 chr1 87411538 87411670 -109783762 + B1F SINE Alu 9 148 -1 1 1251 36163 43 1 5 chr1 87412301 87416207 -109779225 + L1Md_T LINE L1 298 4287 -1599 1 1251 3868 38 0 0 chr1 87416207 87416659 -109778773 + L1Md_T LINE L1 6131 6582 0 1 1251 36163 40 1 1 chr1 87416659 87417963 -109777469 + L1Md_T LINE L1 4288 5589 -297 1 1251 8504 35 3 0 chr1 87417963 87418954 -109776478 + L1Md_T LINE L1 5590 6583 -2 1 1251 2449 149 50 24 chr1 87419148 87419609 -109775823 - RMER1B Other Other -4 1062 590 1 1251 416 60 30 0 chr1 87423446 87423513 -109771919 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 1 1251 266 280 106 64 chr1 87424189 87424203 -109771229 - ID_B1 SINE B4 0 224 138 1 1251 334 302 142 8 chr1 87424203 87424323 -109771109 - B1F SINE Alu -9 140 5 1 1251 629 219 0 115 chr1 87424442 87424607 -109770825 - B1_Mur1 SINE Alu -1 148 3 1 1251 417 179 0 0 chr1 87424639 87424723 -109770709 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1251 567 248 104 0 chr1 87424742 87424898 -109770534 - B3 SINE B2 -25 173 1 1 1252 342 285 25 44 chr1 87425127 87425285 -109770147 - RSINE1 SINE B4 -8 157 3 1 1252 303 258 0 0 chr1 87426002 87426064 -109769368 - ID4_ SINE ID -20 63 2 1 1252 337 299 0 9 chr1 87426080 87426188 -109769244 - PB1D10 SINE Alu -9 108 2 1 1252 366 129 11 23 chr1 87426477 87426564 -109768868 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1252 259 249 6 22 chr1 87426601 87426610 -109768822 + (TG)n Simple_repeat Simple_repeat 1 9 0 1 1252 2717 37 61 6 chr1 87426610 87426938 -109768494 + ORR1A1 LTR MaLR 1 346 0 1 1252 259 249 6 22 chr1 87426938 87427109 -109768323 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1252 234 0 0 0 chr1 87427114 87427140 -109768292 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1252 378 0 0 0 chr1 87427140 87427182 -109768250 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1252 445 314 75 60 chr1 87427234 87427538 -109767894 - B4A SINE B4 -16 276 3 1 1252 1074 192 33 9 chr1 87427561 87427771 -109767661 - B3 SINE B2 -1 215 1 1 1252 1873 182 8 42 chr1 87428284 87428669 -109766763 + ORR1C1 LTR MaLR 7 378 0 1 1252 621 242 45 70 chr1 87429001 87429201 -109766231 - B3 SINE B2 -1 215 21 1 1252 502 204 0 0 chr1 87429316 87429409 -109766023 - B1_Mus2 SINE Alu -11 136 44 1 1252 535 269 176 0 chr1 87429429 87429611 -109765821 + B3 SINE B2 2 215 -1 1 1252 461 47 16 0 chr1 87429652 87429716 -109765716 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 1 1252 325 254 115 0 chr1 87429858 87429988 -109765444 - L1M2 LINE L1 -2183 3960 3816 1 1252 2568 78 60 0 chr1 87430009 87430393 -109765039 + MTB_Mm LTR MaLR 1 407 0 1 1252 347 0 23 0 chr1 87431340 87431383 -109764049 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1252 1688 198 75 10 chr1 87431450 87431837 -109763595 - MTD LTR MaLR -2 417 6 1 1252 1028 276 79 35 chr1 87431968 87432489 -109762943 - L1MB8 LINE L1 -40 6138 5595 1 1252 420 294 8 25 chr1 87432579 87432701 -109762731 - B4A SINE B4 0 292 173 1 1252 970 192 0 62 chr1 87433181 87433375 -109762057 - B3A SINE B2 -16 182 1 1 1252 1215 206 0 18 chr1 87433915 87434133 -109761299 - B3 SINE B2 -2 214 1 1 1252 1174 50 0 0 chr1 87434273 87434413 -109761019 + B1_Mm SINE Alu 1 140 -7 1 1252 180 0 0 0 chr1 87434427 87434447 -109760985 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1252 1285 97 11 0 chr1 87434527 87434703 -109760729 + B2_Mm1a SINE B2 2 179 -14 1 1252 405 132 336 9 chr1 87434766 87434873 -109760559 + B2_Mm2 SINE B2 48 189 -6 1 1252 860 259 0 23 chr1 87434877 87435098 -109760334 - B3 SINE B2 0 216 1 1 1252 355 280 19 101 chr1 87435165 87435324 -109760108 - RSINE1 SINE B4 -2 163 18 1 1252 241 329 0 13 chr1 87435820 87435897 -109759535 - L2a LINE L2 -10 3416 3341 1 1252 760 168 29 7 chr1 87436153 87436291 -109759141 - B1_Mur3 SINE Alu -6 143 3 1 1252 21 0 0 0 chr1 87436363 87436384 -109759048 + AT_rich Low_complexity Low_complexity 1 21 0 1 1252 519 31 0 0 chr1 87436727 87436792 -109758640 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1252 243 272 43 11 chr1 87436961 87437054 -109758378 + MLT1L LTR MaLR 146 241 -369 1 1252 422 88 15 0 chr1 87437097 87437165 -109758267 + (TCCC)n Simple_repeat Simple_repeat 3 71 0 1 1252 451 248 132 0 chr1 87437235 87437356 -109758076 - RSINE1 SINE B4 -10 155 19 1 1252 204 250 21 0 chr1 87437369 87437417 -109758015 + CT-rich Low_complexity Low_complexity 55 103 0 1 1252 265 232 0 0 chr1 87438560 87438616 -109756816 - B2_Mm2 SINE B2 -139 56 1 1 1252 258 308 76 9 chr1 87438647 87438752 -109756680 - PB1D10 SINE Alu -5 112 1 1 1252 874 215 80 0 chr1 87438787 87438987 -109756445 - B3 SINE B2 0 216 1 1 1252 632 45 11 0 chr1 87439021 87439109 -109756323 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1252 297 173 0 0 chr1 87439121 87439173 -109756259 - B1_Mur4 SINE Alu -93 57 6 1 1252 230 259 0 0 chr1 87439125 87439179 -109756253 - ID_B1 SINE B4 -91 133 80 1 1252 873 126 0 0 chr1 87439289 87439432 -109756000 + (TC)n Simple_repeat Simple_repeat 2 144 0 1 1252 531 114 210 81 chr1 87439690 87439814 -109755618 - B1_Mur4 SINE Alu -10 140 1 1 1252 227 289 37 62 chr1 87439825 87439906 -109755526 - PB1D10 SINE Alu -6 111 33 1 1252 2089 129 102 14 chr1 87440198 87440560 -109754872 - ORR1B1 LTR MaLR 0 394 1 1 1252 441 0 0 0 chr1 87440951 87441000 -109754432 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1252 1236 48 0 0 chr1 87441085 87441232 -109754200 - B1_Mus1 SINE Alu 0 148 2 1 1252 908 142 0 14 chr1 87442229 87442372 -109753060 + B1_Mus1 SINE Alu 2 142 -6 1 1252 21 57 0 0 chr1 87442498 87442533 -109752899 + AT_rich Low_complexity Low_complexity 1 35 0 1 1252 220 204 0 0 chr1 87442587 87442631 -109752801 - RSINE1 SINE B4 -109 56 13 1 1252 726 276 71 0 chr1 87442656 87442852 -109752580 - ID_B1 SINE B4 0 224 15 1 1252 360 0 0 0 chr1 87443014 87443054 -109752378 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 1 1252 476 264 6 81 chr1 87443054 87443215 -109752217 - B1_Mur1 SINE Alu 0 149 1 1 1252 228 128 0 0 chr1 87443674 87443708 -109751724 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1252 841 281 23 18 chr1 87443708 87443929 -109751503 - ID_B1 SINE B4 0 224 3 1 1252 324 115 308 34 chr1 87443936 87444053 -109751379 - B2_Mm2 SINE B2 0 195 47 1 1252 1253 71 65 0 chr1 87444090 87444258 -109751174 - B2_Mm1t SINE B2 -14 179 1 1 1252 367 276 11 11 chr1 87445473 87445561 -109749871 - ID SINE ID -136 88 1 1 1252 208 255 20 0 chr1 87445645 87445696 -109749736 + MIRc SINE MIR 109 160 -108 1 1252 342 327 9 53 chr1 87447551 87447688 -109747744 - LTR33B LTR ERVL -328 192 63 1 1252 275 247 214 20 chr1 87447835 87447941 -109747491 - MIRb SINE MIR -28 234 108 1 1252 4938 150 47 36 chr1 87448047 87448939 -109746493 - RMER19B LTR ERVK 0 902 1 1 1252 1044 93 7 0 chr1 87448952 87449114 -109746318 + B2_Mm2 SINE B2 15 184 -9 1 1252 692 88 11 0 chr1 87449118 87449230 -109746202 + B1_Mm SINE Alu 1 120 0 1 1252 212 0 0 35 chr1 87449251 87449280 -109746152 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1252 297 0 0 0 chr1 87449293 87449326 -109746106 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1252 316 324 71 9 chr1 87449326 87449438 -109745994 - RSINE1 SINE B4 -41 124 6 1 1252 230 241 100 33 chr1 87449676 87449736 -109745696 - ID4_ SINE ID -18 65 2 1 1252 399 228 199 75 chr1 87450082 87450243 -109745189 + B3A SINE B2 2 182 -16 1 1252 408 315 83 41 chr1 87450266 87450508 -109744924 - RLTR15 LTR ERVK -2 357 106 1 1252 8149 53 3 3 chr1 87450508 87451806 -109743626 - L1Md_F2 LINE L1 0 6582 5288 1 1252 31638 78 1 16 chr1 87452445 87457514 -109737918 - L1Md_F2 LINE L1 -579 5304 317 1 1252 249 259 12 12 chr1 87457514 87457600 -109737832 - RLTR15 LTR ERVK -225 134 49 1 1252 1350 100 16 10 chr1 87457604 87457796 -109737636 - B2_Mm2 SINE B2 -1 194 2 1 1252 384 265 95 44 chr1 87457798 87457956 -109737476 - RLTR12B LTR ERVK -336 192 27 1 1252 461 191 70 60 chr1 87457939 87458039 -109737393 + B1_Mus2 SINE Alu 46 146 -1 1 1252 201 74 0 0 chr1 87458052 87458079 -109737353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1252 184 100 50 0 chr1 87458138 87458178 -109737254 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1 1252 658 147 0 44 chr1 87458193 87458292 -109737140 - ORR1C1 LTR MaLR 0 378 285 1 1252 512 247 106 37 chr1 87458292 87458481 -109736951 - RMER10B LTR ERVL -2 396 195 1 1252 946 192 82 10 chr1 87459065 87459260 -109736172 - B3 SINE B2 -1 215 7 1 1252 1898 104 3 18 chr1 87459545 87459829 -109735603 - RMER19B LTR ERVK -4 898 619 1 1252 1775 166 133 6 chr1 87459821 87460160 -109735272 - RMER19B LTR ERVK -516 386 5 1 1252 780 82 16 47 chr1 87460293 87460421 -109735011 - RMER19B LTR ERVK 0 902 779 1 1252 1694 158 14 29 chr1 87460346 87460674 -109734758 - MTC LTR MaLR -72 335 1 1 1252 183 80 0 0 chr1 87461400 87461425 -109734007 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1252 7943 157 23 12 chr1 87461583 87463362 -109732070 - Lx5 LINE L1 -7 7043 5240 1 1252 2936 169 65 141 chr1 87463362 87464250 -109731182 - RLTR25A LTR ERVK 0 1103 283 1 1252 1150 186 13 0 chr1 87464250 87464481 -109730951 - Lx5 LINE L1 -5869 1217 984 1 1252 491 237 30 66 chr1 87464770 87464937 -109730495 + L1M3 LINE L1 5440 5600 -571 1 1252 1210 61 0 0 chr1 87464939 87465086 -109730346 + B1_Mus2 SINE Alu 1 147 0 1 1252 240 59 0 0 chr1 87465089 87465123 -109730309 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1252 1070 98 7 7 chr1 87465169 87465318 -109730114 + B2_Mm1a SINE B2 2 150 -43 2 1252 486 0 0 0 chr1 87465318 87465372 -109730060 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 2 1252 410 252 41 25 chr1 87465376 87465498 -109729934 + L1M3 LINE L1 5608 5731 -458 1 1252 232 385 28 0 chr1 87465500 87465609 -109729823 + ORR1E LTR MaLR 20 131 -239 2 1252 1651 221 91 13 chr1 87465618 87466067 -109729365 - RMER5 LTR ERV1 -7 527 44 2 1252 487 234 73 0 chr1 87466178 87466293 -109729139 + ORR1E LTR MaLR 232 355 -24 2 1252 2555 262 82 101 chr1 87466293 87467271 -109728161 + ORR1E-int LTR MaLR 1 959 -621 2 1252 717 174 121 0 chr1 87468255 87468387 -109727045 + B1_Mus1 SINE Alu 1 148 0 2 1252 1858 48 30 42 chr1 87468474 87468736 -109726696 + L1Md_F2 LINE L1 6324 6582 0 2 1252 2069 261 66 24 chr1 87468772 87469319 -109726113 + ORR1E-int LTR MaLR 957 1527 -53 2 1252 1171 258 38 73 chr1 87469319 87469687 -109725745 + ORR1E LTR MaLR 1 355 -4 2 1252 498 274 101 22 chr1 87469716 87469854 -109725578 + RSINE1 SINE B4 1 149 -16 2 1252 405 165 0 76 chr1 87469878 87469970 -109725462 + L1MB4 LINE L1 5746 5830 -350 2 1252 568 200 0 0 chr1 87469985 87470090 -109725342 + PB1D9 SINE Alu 10 114 -6 2 1252 629 242 23 69 chr1 87471444 87471617 -109723815 + RLTR33 LTR ERVK 429 593 -85 2 1252 555 237 70 135 chr1 87471821 87472050 -109723382 + MTE2b LTR MaLR 2 215 -164 2 1252 1095 134 0 0 chr1 87472075 87472254 -109723178 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 2 1252 181 93 22 65 chr1 87472256 87472281 -109723151 + T-rich Low_complexity Low_complexity 25 48 0 2 1252 1149 68 7 0 chr1 87472281 87472427 -109723005 - B1_Mus1 SINE Alu 0 148 2 2 1252 181 93 22 65 chr1 87472427 87472447 -109722985 + T-rich Low_complexity Low_complexity 5 24 0 2 1252 1295 130 77 5 chr1 87472680 87472889 -109722543 - URR1B DNA MER1_type -1 224 1 2 1252 207 0 0 0 chr1 87473142 87473165 -109722267 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1252 180 254 87 29 chr1 87473364 87473433 -109721999 + MIRb SINE MIR 46 118 -150 2 1252 333 0 0 0 chr1 87473695 87473732 -109721700 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1252 576 70 0 0 chr1 87473732 87473817 -109721615 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1252 445 254 25 34 chr1 87474257 87474375 -109721057 - RSINE1 SINE B4 -6 159 43 2 1252 697 290 52 52 chr1 87474548 87474817 -109720615 + RMER20B LTR ERVK 116 384 -243 2 1252 210 37 0 0 chr1 87475205 87475232 -109720200 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1252 1139 85 0 0 chr1 87475235 87475376 -109720056 - B1_Mus2 SINE Alu -6 141 1 2 1252 335 281 97 41 chr1 87477930 87478075 -109717357 + Lx8 LINE L1 7243 7395 -78 2 1252 312 256 0 0 chr1 87478616 87478694 -109716738 + G-rich Low_complexity Low_complexity 1 78 0 2 1252 941 189 4 4 chr1 87478996 87479235 -109716197 + GA-rich Low_complexity Low_complexity 1 239 0 2 1252 227 343 60 87 chr1 87479347 87479497 -109715935 + RSINE1 SINE B4 2 147 -18 2 1252 1060 161 15 40 chr1 87479535 87479736 -109715696 - B3 SINE B2 -10 206 11 2 1252 236 321 74 0 chr1 87480398 87480465 -109714967 + Charlie1a DNA MER1_type 805 877 -578 2 1252 511 257 62 35 chr1 87480465 87480610 -109714822 + B1_Mur1 SINE Alu 1 149 0 2 1252 236 321 74 0 chr1 87480610 87480623 -109714809 + Charlie1a DNA MER1_type 878 890 -565 2 1252 699 12 0 0 chr1 87480639 87480719 -109714713 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 2 1252 376 257 0 0 chr1 87480728 87480802 -109714630 - PB1D9 SINE Alu -46 74 1 2 1252 299 335 76 27 chr1 87480918 87481102 -109714330 + Charlie1a DNA MER1_type 1059 1251 -204 2 1252 21 36 0 0 chr1 87481138 87481166 -109714266 + AT_rich Low_complexity Low_complexity 1 28 0 2 1252 365 303 0 112 chr1 87481783 87481825 -109713607 + B4 SINE B4 56 79 -213 2 1252 705 159 0 80 chr1 87481825 87481962 -109713470 + B1_Mus1 SINE Alu 1 126 -22 2 1252 184 30 29 29 chr1 87481962 87481996 -109713436 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 2 1252 568 297 20 0 chr1 87483458 87483606 -109711826 - RSINE1 SINE B4 -12 153 3 2 1252 1118 214 19 9 chr1 87484257 87484469 -109710963 - B3 SINE B2 -1 215 2 2 1252 36 40 0 0 chr1 87484708 87484758 -109710674 + AT_rich Low_complexity Low_complexity 1 50 0 2 1252 1169 82 0 0 chr1 87484758 87484905 -109710527 - B1_Mus2 SINE Alu 0 147 1 2 1252 704 71 0 10 chr1 87485918 87486018 -109709414 + (TTC)n Simple_repeat Simple_repeat 3 101 0 2 1252 322 268 0 9 chr1 87486379 87486471 -109708961 + ID2 SINE ID 1 88 -64 2 1252 893 55 8 0 chr1 87486560 87486688 -109708744 + (GA)n Simple_repeat Simple_repeat 1 129 0 2 1252 4563 59 42 51 chr1 87486949 87487597 -109707835 + L1_Mus3 LINE L1 5993 6634 -4 2 1252 1035 140 166 0 chr1 87487666 87487859 -109707573 + URR1B DNA MER1_type 1 225 0 2 1252 2282 245 62 42 chr1 87488600 87489243 -109706189 + Lx7 LINE L1 6140 6795 -901 2 1252 747 42 0 0 chr1 87489245 87489340 -109706092 - B1_Mm SINE Alu -52 95 1 2 1252 484 205 59 17 chr1 87489340 87489364 -109706068 - B4 SINE B4 -106 186 63 2 1252 199 330 139 0 chr1 87490150 87490265 -109705167 + MIRb SINE MIR 92 222 -46 2 1252 371 171 13 0 chr1 87490310 87490386 -109705046 + CT-rich Low_complexity Low_complexity 3 79 0 2 1252 412 263 48 39 chr1 87490491 87490594 -109704838 + PB1D7 SINE Alu 7 110 -10 2 1252 514 292 27 7 chr1 87491104 87491252 -109704180 + RSINE1 SINE B4 2 152 -13 2 1252 796 166 13 58 chr1 87491292 87491446 -109703986 + B1_Mus2 SINE Alu 1 147 0 2 1252 796 65 27 27 chr1 87491930 87492041 -109703391 + RMER6C LTR ERVK 1 111 -579 2 1252 596 159 0 130 chr1 87492025 87492120 -109703312 + MT2B LTR ERVL 181 259 -342 2 1252 361 244 51 0 chr1 87492120 87492198 -109703234 + PB1D9 SINE Alu 3 84 -36 2 1252 264 357 16 89 chr1 87492198 87492243 -109703189 + B4A SINE B4 88 201 -91 2 1252 256 405 24 33 chr1 87492954 87493166 -109702266 - MIR SINE MIR -14 248 39 2 1252 348 228 25 0 chr1 87493626 87493712 -109701720 - ID4 SINE ID -61 91 4 2 1252 508 185 176 0 chr1 87494287 87494406 -109701026 + B1_Mus2 SINE Alu 1 140 -7 2 1252 233 232 73 0 chr1 87494446 87494528 -109700904 + L1M LINE L1 5260 5347 -777 2 1252 212 149 42 21 chr1 87495007 87495055 -109700377 + C-rich Low_complexity Low_complexity 3 51 0 2 1252 297 0 0 0 chr1 87495703 87495736 -109699696 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1252 378 0 0 0 chr1 87496101 87496143 -109699289 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1252 342 0 0 0 chr1 87496196 87496234 -109699198 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1252 386 345 117 33 chr1 87496466 87496766 -109698666 - L1ME1 LINE L1 -42 6137 5813 2 1252 1552 33 0 0 chr1 87497893 87498075 -109697357 + MERVL-int LTR ERVL 1370 1551 -3934 2 1252 17428 14 1 3 chr1 87498071 87500000 -109695432 - MERVL-int LTR ERVL -3228 2257 333 2 1252 3000 15 0 0 chr1 87500000 87500332 -109695100 - MERVL-int LTR ERVL -5153 332 1 1 1252 3322 9 121 109 chr1 87500332 87500819 -109694613 - MT2_Mm LTR ERVL 0 493 1 1 1252 588 29 0 0 chr1 87501252 87501322 -109694110 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1252 243 0 0 0 chr1 87501322 87501348 -109694084 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1252 524 276 34 93 chr1 87501352 87501556 -109693876 + B3A SINE B2 7 198 0 4 1252 321 308 194 45 chr1 87501641 87502022 -109693410 - L1MCa LINE L1 -2574 3747 3310 5 1252 603 252 6 31 chr1 87502230 87502390 -109693042 - RSINE1 SINE B4 -8 157 2 6 1252 311 236 116 17 chr1 87502425 87502606 -109692826 - L1MCa LINE L1 -4147 2361 2163 5 1252 257 75 0 24 chr1 87502606 87502647 -109692785 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 7 1252 683 290 54 5 chr1 87502960 87503144 -109692288 + B4A SINE B4 47 239 -53 8 1252 25 31 0 0 chr1 87503219 87503251 -109692181 + AT_rich Low_complexity Low_complexity 1 32 0 9 1252 650 179 0 57 chr1 87503347 87503471 -109691961 - B1_Mur1 SINE Alu -27 122 6 1 1252 759 315 75 26 chr1 87503470 87503926 -109691506 - Charlie1b DNA MER1_type -38 485 8 1 1252 562 279 107 60 chr1 87504012 87504348 -109691084 + Lx9 LINE L1 7266 7617 -27 1 1252 28 29 0 0 chr1 87504366 87504401 -109691031 + AT_rich Low_complexity Low_complexity 1 35 0 1 1252 381 298 39 0 chr1 87504533 87504637 -109690795 - RSINE1 SINE B4 -55 110 3 1 1252 266 200 13 67 chr1 87504680 87504737 -109690695 - B1F SINE Alu -6 143 91 1 1252 463 266 30 30 chr1 87504737 87504869 -109690563 + RSINE1 SINE B4 3 134 -31 1 1252 279 79 0 0 chr1 87505392 87505430 -109690002 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1252 1229 55 0 0 chr1 87505430 87505576 -109689856 - B1_Mm SINE Alu 0 147 2 1 1252 1056 225 66 134 chr1 87505578 87505973 -109689459 - MTE2a LTR MaLR -6 373 6 1 1252 462 269 35 21 chr1 87505978 87506122 -109689310 + B1_Mur1 SINE Alu 3 148 -1 2 1252 23 0 0 0 chr1 87506157 87506180 -109689252 + AT_rich Low_complexity Low_complexity 1 23 0 2 1252 1226 48 0 0 chr1 87507552 87507699 -109687733 - B1_Mm SINE Alu 0 147 1 2 1252 383 253 25 13 chr1 87508611 87508847 -109686585 + CT-rich Low_complexity Low_complexity 1 239 0 2 1252 424 126 11 11 chr1 87508847 87508935 -109686497 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 2 1252 529 258 8 16 chr1 87509635 87509757 -109685675 + RSINE1 SINE B4 27 147 -18 2 1252 829 276 9 14 chr1 87510364 87510581 -109684851 - B3 SINE B2 0 216 1 2 1252 1111 67 0 24 chr1 87511065 87511233 -109684199 - B2_Mm2 SINE B2 -31 164 1 2 1252 624 251 34 68 chr1 87513260 87513465 -109681967 - B3A SINE B2 0 198 1 2 1252 233 186 92 79 chr1 87513712 87513788 -109681644 - Lx8 LINE L1 -28 7445 7369 2 1252 246 211 190 60 chr1 87513836 87513952 -109681480 - Lx7 LINE L1 -329 7367 7237 3 1252 1211 55 0 0 chr1 87515833 87515979 -109679453 - B1_Mus2 SINE Alu 0 147 2 3 1252 258 256 42 62 chr1 87516385 87516481 -109678951 + ID_B1 SINE B4 122 215 -9 3 1252 216 0 0 0 chr1 87516491 87516515 -109678917 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 3 1252 365 267 0 0 chr1 87516515 87516590 -109678842 + ID4 SINE ID 6 80 -3 3 1252 3162 177 55 5 chr1 87516970 87517694 -109677738 - Lx4B LINE L1 -11 7047 6231 3 1252 327 335 93 12 chr1 87518507 87518679 -109676753 + MLT1D LTR MaLR 320 505 0 3 1252 572 263 0 7 chr1 87518965 87519103 -109676329 - B1_Mur1 SINE Alu -7 142 6 3 1252 416 325 61 15 chr1 87519483 87519811 -109675621 - L1ME2z LINE L1 -493 5951 5609 3 1252 2894 185 19 63 chr1 87520204 87520843 -109674589 - RMER19C LTR ERVK 0 611 1 3 1252 255 252 106 68 chr1 87520976 87521108 -109674324 - MER68-int LTR ERVL -1076 1914 1778 4 1252 241 363 80 0 chr1 87522972 87523085 -109672347 - B4A SINE B4 -130 162 41 4 1252 450 0 0 0 chr1 87523321 87523371 -109672061 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1252 543 128 0 0 chr1 87523371 87523480 -109671952 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 1252 788 274 75 39 chr1 87523605 87523886 -109671546 + B4A SINE B4 2 292 0 4 1252 21 36 0 0 chr1 87523966 87523994 -109671438 + AT_rich Low_complexity Low_complexity 1 28 0 4 1252 189 74 0 0 chr1 87524036 87524063 -109671369 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1252 522 0 0 0 chr1 87524063 87524120 -109671312 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1252 27 0 0 0 chr1 87526842 87526869 -109668563 + AT_rich Low_complexity Low_complexity 1 27 0 4 1252 183 204 22 22 chr1 87527566 87527611 -109667821 + MIRc SINE MIR 113 157 -111 4 1252 1003 304 87 25 chr1 87527925 87528479 -109666953 - L1MB5 LINE L1 -196 5978 5391 5 1252 1499 63 16 0 chr1 87529469 87529660 -109665772 + B2_Mm2 SINE B2 2 195 0 5 1252 4869 116 17 16 chr1 87529748 87530503 -109664929 - RMER6A LTR ERVK 0 756 1 5 1252 588 238 1 2 chr1 87530619 87530755 -109664677 + B1_Mur3 SINE Alu 13 149 0 5 1252 1126 244 97 29 chr1 87530891 87531271 -109664161 - MTD LTR MaLR -13 406 1 5 1252 304 250 121 30 chr1 87531450 87531549 -109663883 + B1_Mus1 SINE Alu 6 113 -35 5 1252 695 153 13 13 chr1 87531561 87531713 -109663719 + GA-rich Low_complexity Low_complexity 3 154 0 5 1252 567 225 8 8 chr1 87534166 87534296 -109661136 + ID_B1 SINE B4 87 216 -8 5 1252 340 244 126 11 chr1 87535834 87535921 -109659511 - ID_B1 SINE B4 -7 217 121 5 1252 230 252 296 9 chr1 87535921 87535942 -109659490 - B1F1 SINE Alu -7 142 4 5 1252 288 222 16 0 chr1 87536362 87536425 -109659007 - LTR53 LTR ERVL -453 66 3 6 1252 2400 145 3 10 chr1 87536832 87537222 -109658210 - ORR1B1 LTR MaLR -7 387 1 6 1252 1943 173 36 17 chr1 87537727 87538086 -109657346 - ORR1B2 LTR MaLR 0 367 2 6 1252 247 339 62 0 chr1 87540046 87540158 -109655274 + PB1D7 SINE Alu 2 120 0 6 1252 279 0 0 0 chr1 87540303 87540334 -109655098 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1252 698 209 0 29 chr1 87540370 87540508 -109654924 + B1_Mus2 SINE Alu 5 138 -9 6 1252 279 0 0 0 chr1 87540522 87540553 -109654879 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1252 237 315 14 0 chr1 87540615 87540688 -109654744 - B3A SINE B2 -124 74 1 6 1252 219 316 0 12 chr1 87540701 87540781 -109654651 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1252 345 250 11 0 chr1 87540882 87540970 -109654462 - B4A SINE B4 -202 90 2 6 1252 219 288 34 0 chr1 87541609 87541668 -109653764 + B4A SINE B4 85 145 -147 7 1252 512 244 61 0 chr1 87541617 87541748 -109653684 + B1F SINE Alu 10 148 -1 7 1252 2438 151 50 24 chr1 87542561 87543022 -109652410 - RMER1B Other Other -4 1062 590 7 1252 681 79 0 0 chr1 87546856 87546957 -109648475 + (GA)n Simple_repeat Simple_repeat 2 102 0 7 1252 266 280 106 64 chr1 87547610 87547624 -109647808 - ID_B1 SINE B4 0 224 138 7 1252 334 302 142 8 chr1 87547624 87547744 -109647688 - B1F SINE Alu -9 140 5 7 1252 657 219 0 93 chr1 87547867 87548028 -109647404 - B1_Mur1 SINE Alu -1 148 3 7 1252 414 100 0 0 chr1 87548069 87548129 -109647303 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1252 671 242 44 0 chr1 87548148 87548312 -109647120 - B3 SINE B2 -25 173 1 7 1252 358 296 19 38 chr1 87548540 87548698 -109646734 - RSINE1 SINE B4 -8 157 3 7 1252 274 274 0 0 chr1 87549416 87549478 -109645954 - ID4_ SINE ID -20 63 2 8 1252 337 299 0 9 chr1 87549494 87549602 -109645830 - PB1D10 SINE Alu -9 108 2 8 1252 531 99 10 19 chr1 87549890 87549993 -109645439 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1252 2713 37 61 6 chr1 87550039 87550367 -109645065 + ORR1A1 LTR MaLR 1 346 0 8 1252 332 206 15 15 chr1 87550405 87550538 -109644894 + (TG)n Simple_repeat Simple_repeat 2 134 0 8 1252 363 93 0 0 chr1 87550547 87550553 -109644879 + (TA)n Simple_repeat Simple_repeat 2 7 0 8 1252 387 0 0 0 chr1 87550553 87550596 -109644836 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1252 363 93 0 0 chr1 87550596 87550643 -109644789 + (TA)n Simple_repeat Simple_repeat 1 47 0 8 1252 493 328 91 70 chr1 87550695 87550980 -109644452 - B4A SINE B4 0 292 2 8 1252 1087 197 33 9 chr1 87551004 87551214 -109644218 - B3 SINE B2 -1 215 1 8 1252 1887 179 8 42 chr1 87551746 87552131 -109643301 + ORR1C1 LTR MaLR 7 378 0 9 1252 637 237 45 70 chr1 87552463 87552663 -109642769 - B3 SINE B2 -1 215 21 9 1252 524 194 0 0 chr1 87552778 87552871 -109642561 - B1_Mus2 SINE Alu -11 136 44 9 1252 490 268 196 0 chr1 87552891 87553070 -109642362 + B3 SINE B2 2 215 -1 9 1252 633 27 0 0 chr1 87553116 87553191 -109642241 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 9 1252 384 239 115 0 chr1 87553329 87553459 -109641973 - L1M2 LINE L1 -2183 3960 3816 9 1252 2451 56 97 0 chr1 87553493 87553853 -109641579 + MTB_Mm LTR MaLR 13 407 0 9 1252 1679 201 74 8 chr1 87554895 87555272 -109640160 - MTD LTR MaLR -12 407 6 9 1252 1024 283 60 29 chr1 87555437 87555924 -109639508 - L1MB7 LINE L1 -88 6096 5595 9 156 420 294 8 25 chr1 87556013 87556135 -109639297 - B4A SINE B4 0 292 173 9 1253 573 110 0 0 chr1 87556580 87556671 -109638761 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1253 829 206 0 0 chr1 87556681 87556836 -109638596 - B3A SINE B2 -43 155 1 1 1253 936 233 58 19 chr1 87557376 87557582 -109637850 - B3 SINE B2 -2 214 1 1 1253 1207 48 7 0 chr1 87557722 87557868 -109637564 + B1_Mm SINE Alu 1 147 0 1 1253 1339 80 11 0 chr1 87557970 87558146 -109637286 + B2_Mm1a SINE B2 2 179 -14 1 1253 312 129 333 9 chr1 87558208 87558316 -109637116 + B2_Mm2 SINE B2 47 189 -6 1 1253 927 250 0 23 chr1 87558320 87558541 -109636891 - B3 SINE B2 0 216 1 1 1253 355 280 19 101 chr1 87558608 87558767 -109636665 - RSINE1 SINE B4 -2 163 18 1 1253 227 329 0 13 chr1 87559263 87559340 -109636092 - L2a LINE L2 -10 3416 3341 1 1253 331 149 75 0 chr1 87560348 87560415 -109635017 + PB1D10 SINE Alu 46 117 0 1 1253 428 173 25 0 chr1 87561965 87562046 -109633386 - MTD LTR MaLR -2 417 335 1 1253 820 240 25 5 chr1 87562058 87562255 -109633177 - MTD LTR MaLR -201 218 18 1 1253 805 148 49 7 chr1 87562735 87562878 -109632554 - B1_Mur4 SINE Alu -1 149 1 1 1253 208 330 0 49 chr1 87563180 87563282 -109632150 + MIRb SINE MIR 88 184 -84 1 1253 713 265 45 10 chr1 87563744 87563946 -109631486 - B3 SINE B2 -5 211 3 1 1253 399 200 55 61 chr1 87564218 87564399 -109631033 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 1 1253 370 208 73 36 chr1 87564406 87564650 -109630782 + (GAGTG)n Simple_repeat Simple_repeat 1 252 0 1 1253 328 308 0 23 chr1 87564582 87564758 -109630674 + GA-rich Low_complexity Low_complexity 5 176 0 1 1253 427 201 71 35 chr1 87564786 87564956 -109630476 + (GAGTG)n Simple_repeat Simple_repeat 1 176 0 1 1253 341 315 0 33 chr1 87564879 87565097 -109630335 + G-rich Low_complexity Low_complexity 1 210 0 1 1253 350 225 14 0 chr1 87566770 87566841 -109628591 + ID4_ SINE ID 1 72 -11 1 1253 342 45 0 0 chr1 87566841 87566885 -109628547 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1253 516 32 0 0 chr1 87566885 87566946 -109628486 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1253 642 239 249 28 chr1 87566961 87567510 -109627922 - L1MA7 LINE L1 -51 6240 5572 1 1253 408 270 37 67 chr1 87567607 87567742 -109627690 + RSINE1 SINE B4 20 150 -15 1 1253 541 251 168 37 chr1 87568384 87568574 -109626858 + B3 SINE B2 2 216 0 1 1253 336 313 63 75 chr1 87568913 87569072 -109626360 + ID_B1 SINE B4 64 220 -4 1 1253 351 312 37 24 chr1 87569295 87569459 -109625973 + L1ME3A LINE L1 5910 6075 -98 1 1253 518 214 35 18 chr1 87569531 87569645 -109625787 - PB1D10 SINE Alu -1 116 1 1 1253 215 278 0 0 chr1 87569802 87569856 -109625576 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1253 995 249 19 81 chr1 87569856 87570166 -109625266 - B4 SINE B4 0 292 2 1 1253 1064 100 6 0 chr1 87570568 87570728 -109624704 + (GAA)n Simple_repeat Simple_repeat 1 161 0 1 1253 450 0 0 0 chr1 87570728 87570778 -109624654 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1253 3081 52 31 5 chr1 87571005 87571395 -109624037 - MTB LTR MaLR 0 400 1 1 1253 725 133 0 0 chr1 87571456 87571569 -109623863 + 5S rRNA rRNA 8 120 -1 1 1253 228 167 0 0 chr1 87572090 87572138 -109623294 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1253 529 280 16 74 chr1 87572223 87572412 -109623020 - B4 SINE B4 -114 178 1 1 1253 1713 21 0 0 chr1 87572522 87572714 -109622718 + B2_Mm1a SINE B2 2 193 0 1 1253 255 242 198 10 chr1 87573084 87573180 -109622252 + PB1D10 SINE Alu 4 117 0 1 1253 195 69 0 0 chr1 87573196 87573225 -109622207 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1253 265 297 0 0 chr1 87573665 87573729 -109621703 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1253 933 285 3 21 chr1 87573743 87574026 -109621406 - B4 SINE B4 -10 282 5 1 1253 650 249 68 19 chr1 87574867 87575072 -109620360 + B3 SINE B2 2 216 0 1 1253 873 114 27 48 chr1 87575303 87575450 -109619982 + B1_Mur4 SINE Alu 5 148 -2 1 1253 223 111 89 0 chr1 87576396 87576441 -109618991 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 1 1253 699 267 37 83 chr1 87576473 87576714 -109618718 - B4 SINE B4 -41 251 22 1 1253 229 217 0 68 chr1 87576992 87577066 -109618366 + C-rich Low_complexity Low_complexity 2 70 0 1 1253 231 36 0 0 chr1 87578355 87578383 -109617049 + (CGTG)n Simple_repeat Simple_repeat 4 31 0 1 1253 651 316 29 63 chr1 87578386 87578699 -109616733 - B4A SINE B4 -8 284 2 1 1253 977 46 0 15 chr1 87579138 87579271 -109616161 + B1_Mm SINE Alu 17 147 0 1 1253 192 40 0 0 chr1 87579272 87579297 -109616135 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1253 219 36 0 0 chr1 87579331 87579359 -109616073 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1253 2158 134 50 48 chr1 87579371 87579748 -109615684 + ORR1C1 LTR MaLR 1 378 0 1 1253 2197 159 135 21 chr1 87579821 87580295 -109615137 + RLTR11A LTR ERVK 1 528 0 1 1253 579 292 108 27 chr1 87580709 87580969 -109614463 + B4A SINE B4 10 290 -2 1 1253 750 251 99 77 chr1 87581021 87581293 -109614139 + B4 SINE B4 1 278 -14 1 1253 423 98 0 0 chr1 87581430 87581491 -109613941 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1253 282 56 0 0 chr1 87581938 87581974 -109613458 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1 1253 2514 110 104 10 chr1 87582785 87583170 -109612262 + MTC LTR MaLR 1 421 0 1 1253 588 311 38 34 chr1 87584212 87584448 -109610984 + B4A SINE B4 56 292 0 1 1253 25 31 0 0 chr1 87585248 87585280 -109610152 + AT_rich Low_complexity Low_complexity 1 32 0 1 1253 308 294 79 56 chr1 87585354 87585399 -109610033 + MT2B2 LTR ERVL 112 159 -425 1 1253 883 141 14 0 chr1 87585399 87585541 -109609891 + B1_Mus2 SINE Alu 3 146 -1 1 1253 21 36 0 0 chr1 87585854 87585882 -109609550 + AT_rich Low_complexity Low_complexity 1 28 0 1 1253 346 151 27 0 chr1 87586372 87586445 -109608987 + CT-rich Low_complexity Low_complexity 2 76 0 1 1253 886 170 0 47 chr1 87586469 87586617 -109608815 - B1_Mur4 SINE Alu -5 145 5 1 1253 237 274 109 101 chr1 87586937 87586958 -109608474 + B4 SINE B4 82 126 -166 1 1253 247 200 91 26 chr1 87586958 87587035 -109608397 + MT2B2 LTR ERVL 175 256 -328 1 1253 675 120 0 0 chr1 87586976 87587076 -109608356 + B1_Mur3 SINE Alu 45 144 -5 1 1253 237 274 109 101 chr1 87587035 87587075 -109608357 + B4 SINE B4 127 220 -72 1 1253 248 127 18 0 chr1 87587100 87587155 -109608277 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1253 1714 168 6 6 chr1 87587558 87587870 -109607562 - MTC LTR MaLR -3 418 107 1 1253 752 165 113 0 chr1 87587872 87588005 -109607427 + B1_Mur4 SINE Alu 2 149 -1 1 1253 1197 58 0 0 chr1 87588014 87588168 -109607264 + (TAGA)n Simple_repeat Simple_repeat 2 155 0 1 1253 549 0 0 0 chr1 87588191 87588252 -109607180 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1253 469 146 169 0 chr1 87588279 87588368 -109607064 - MTC LTR MaLR -301 120 17 1 1253 1277 18 11 23 chr1 87589227 87589401 -109606031 + (TCTCCC)n Simple_repeat Simple_repeat 2 173 0 1 1253 245 222 0 27 chr1 87589402 87589476 -109605956 + CT-rich Low_complexity Low_complexity 6 77 0 1 1253 283 164 33 0 chr1 87589946 87590007 -109605425 + B1F1 SINE Alu 81 143 -6 1 1253 613 168 0 7 chr1 87590138 87590260 -109605172 - B1_Mur4 SINE Alu -16 134 15 1 1253 372 22 0 0 chr1 87590360 87590405 -109605027 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1253 507 17 0 0 chr1 87590405 87590464 -109604968 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1253 316 282 136 0 chr1 87590514 87590617 -109604815 + MER58A DNA MER1_type 3 119 -105 1 1253 797 181 7 0 chr1 87590934 87591072 -109604360 - B1_Mur1 SINE Alu -8 141 3 1 1253 771 193 0 21 chr1 87591263 87591392 -109604040 + B1_Mus2 SINE Alu 6 134 -13 1 1253 191 61 0 29 chr1 87591392 87591426 -109604006 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1253 771 193 0 21 chr1 87591426 87591439 -109603993 + B1_Mus2 SINE Alu 135 145 -2 1 1253 421 211 31 47 chr1 87591475 87591604 -109603828 - L1MA4 LINE L1 -369 5931 5805 1 1253 1321 142 26 31 chr1 87592827 87593053 -109602379 + URR1B DNA MER1_type 1 225 0 1 1253 664 174 0 0 chr1 87593856 87593971 -109601461 + B1_Mus1 SINE Alu 1 115 -33 1 1253 411 21 0 0 chr1 87593971 87594019 -109601413 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1253 248 241 37 0 chr1 87594295 87594349 -109601083 - ID SINE ID -164 60 5 1 1253 197 312 39 0 chr1 87594988 87595065 -109600367 + MIRb SINE MIR 116 195 -73 1 1253 694 245 124 10 chr1 87595176 87595370 -109600062 - B3 SINE B2 0 216 1 1 1253 803 223 62 38 chr1 87595774 87595984 -109599448 + B3 SINE B2 2 216 0 1 1253 518 177 167 9 chr1 87596893 87597007 -109598425 + B1F SINE Alu 1 132 -17 1 1253 195 129 0 0 chr1 87598230 87598261 -109597171 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 1 1253 571 209 85 8 chr1 87598379 87598509 -109596923 + B3 SINE B2 1 140 -76 1 1253 247 323 0 15 chr1 87598755 87598821 -109596611 - ID4 SINE ID -10 73 9 1 1253 1110 209 19 0 chr1 87598927 87599138 -109596294 + B3 SINE B2 2 216 0 1 1253 265 193 34 34 chr1 87599182 87599241 -109596191 + ID4_ SINE ID 16 74 -9 1 1253 468 0 0 0 chr1 87599676 87599728 -109595704 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1253 351 0 0 0 chr1 87599729 87599768 -109595664 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1253 708 267 17 0 chr1 87601032 87601176 -109594256 + B3 SINE B2 2 147 -69 1 1253 489 17 0 0 chr1 87601176 87601234 -109594198 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1253 708 267 17 0 chr1 87601234 87601265 -109594167 + B3 SINE B2 148 179 -37 1 1253 307 252 30 10 chr1 87601265 87601397 -109594035 + (TATATG)n Simple_repeat Simple_repeat 1 134 0 2 1253 351 0 0 0 chr1 87601706 87601745 -109593687 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1253 1817 178 91 30 chr1 87602485 87602879 -109592553 - MTD LTR MaLR 0 419 2 2 1253 436 303 68 151 chr1 87603973 87604135 -109591297 - MLT1A0 LTR MaLR -23 342 211 2 1253 733 173 72 0 chr1 87604135 87604274 -109591158 - B1_Mur1 SINE Alu 0 149 1 2 1253 436 303 68 151 chr1 87604274 87604476 -109590956 - MLT1A0 LTR MaLR -155 210 8 2 1253 237 33 0 0 chr1 87605076 87605106 -109590326 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1253 1437 102 1 2 chr1 87605112 87605309 -109590123 + L1_Mus1 LINE L1 6118 6296 -271 2 1253 399 155 68 45 chr1 87605349 87605437 -109589995 - RSINE1 SINE B4 -74 91 2 2 1253 415 222 153 36 chr1 87605888 87606084 -109589348 + RLTR42-int LTR ERVK 1187 1405 -4117 2 1253 710 23 11 0 chr1 87606233 87606321 -109589111 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 1253 1021 107 0 11 chr1 87606625 87606817 -109588615 - MTA_Mm LTR MaLR 0 407 221 2 1253 14077 76 11 0 chr1 87606817 87608661 -109586771 - L1_Mus1 LINE L1 -288 5595 3731 2 1253 7502 48 27 4 chr1 87608658 87609582 -109585850 + L1_Mus1 LINE L1 5627 6653 -1 2 1253 1678 108 0 11 chr1 87609582 87609844 -109585588 - MTA_Mm LTR MaLR -137 259 1 2 1253 309 193 0 0 chr1 87610247 87610304 -109585128 + RLTR42-int LTR ERVK 1549 1605 -3917 2 1253 1881 182 55 25 chr1 87610497 87610896 -109584536 + MTD LTR MaLR 6 416 -3 2 1253 2398 133 29 8 chr1 87611167 87611553 -109583879 + ORR1B1 LTR MaLR 1 394 0 2 1253 369 145 0 0 chr1 87611744 87611806 -109583626 + (TAA)n Simple_repeat Simple_repeat 2 63 0 2 1253 502 272 36 129 chr1 87611959 87611999 -109583433 + B4 SINE B4 48 69 -223 2 1253 726 203 6 51 chr1 87611999 87612155 -109583277 + B1_Mur2 SINE Alu 1 149 0 2 1253 876 197 175 77 chr1 87612564 87612659 -109582773 - MT2A LTR ERVL 0 533 453 2 1253 414 39 0 0 chr1 87612659 87612711 -109582721 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1253 876 205 398 68 chr1 87612711 87613033 -109582399 - MT2A LTR ERVL -81 452 1 2 1253 182 243 236 28 chr1 87613267 87613339 -109582093 + L2b LINE L2 3235 3321 -54 2 1253 205 143 48 0 chr1 87613676 87613718 -109581714 + T-rich Low_complexity Low_complexity 1 44 0 2 1253 276 185 0 0 chr1 87614181 87614235 -109581197 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1253 25 0 0 0 chr1 87614260 87614285 -109581147 + AT_rich Low_complexity Low_complexity 1 25 0 2 1253 2315 142 21 31 chr1 87614310 87614696 -109580736 - RLTR14 LTR ERV1 0 382 1 2 1253 480 117 0 0 chr1 87615286 87615363 -109580069 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1253 515 202 9 60 chr1 87615836 87615952 -109579480 + PB1D10 SINE Alu 1 110 -7 2 1253 198 167 0 0 chr1 87615969 87616005 -109579427 + GA-rich Low_complexity Low_complexity 1 36 0 2 1253 1062 97 14 0 chr1 87616253 87616397 -109579035 + B1_Mus1 SINE Alu 2 147 -1 2 1253 562 299 149 4 chr1 87616442 87616684 -109578748 + MER2 DNA MER2_type 11 287 -58 2 1253 342 0 0 0 chr1 87617332 87617370 -109578062 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1253 428 275 37 22 chr1 87618354 87618488 -109576944 + RLTR23 LTR ERV1 295 430 0 2 1253 988 239 19 0 chr1 87619308 87619517 -109575915 + B3 SINE B2 4 216 0 2 1253 1367 128 9 44 chr1 87620039 87620268 -109575164 + URR1B DNA MER1_type 5 225 0 2 1253 855 226 39 73 chr1 87620306 87620511 -109574921 - B3A SINE B2 0 198 1 2 1253 519 167 0 0 chr1 87620569 87620653 -109574779 + BC1_Mm scRNA scRNA 1 84 -68 2 1253 243 0 0 0 chr1 87620791 87620818 -109574614 + (TGG)n Simple_repeat Simple_repeat 2 28 0 2 1253 198 367 12 12 chr1 87621044 87621124 -109574308 + L2b LINE L2 3295 3374 -1 2 1253 1422 260 113 46 chr1 87621138 87621641 -109573791 + Lx8 LINE L1 6935 7471 -2 2 1253 1280 90 6 17 chr1 87622532 87622712 -109572720 + B2_Mm1t SINE B2 2 179 -14 2 1253 403 128 351 18 chr1 87622777 87622888 -109572544 + B2_Mm2 SINE B2 47 194 -1 2 1253 338 260 129 10 chr1 87623261 87623362 -109572070 + L1M5 LINE L1 3506 3618 -2528 2 1253 1032 156 0 0 chr1 87623362 87623542 -109571890 + GA-rich Low_complexity Low_complexity 1 180 0 2 1253 373 242 81 0 chr1 87623804 87623903 -109571529 + PB1D7 SINE Alu 1 107 -13 2 1253 546 278 33 0 chr1 87623932 87624083 -109571349 + Lx8 LINE L1 5692 5847 0 2 1253 2498 97 66 0 chr1 87624096 87624458 -109570974 + ORR1B1 LTR MaLR 1 386 -8 2 1253 1071 274 63 99 chr1 87624756 87624945 -109570487 + Lx8 LINE L1 6200 6407 -1066 2 1253 1189 55 0 7 chr1 87624945 87625091 -109570341 + B1_Mus2 SINE Alu 2 146 -1 2 1253 1071 274 63 99 chr1 87625091 87625327 -109570105 + Lx8 LINE L1 6408 6610 -863 2 1253 21 0 0 0 chr1 87625632 87625653 -109569779 + AT_rich Low_complexity Low_complexity 1 21 0 2 1253 425 200 62 0 chr1 87625668 87625744 -109569688 + B4 SINE B4 1 81 -211 2 1253 621 267 73 88 chr1 87625744 87625949 -109569483 + B3 SINE B2 2 203 -13 2 1253 264 30 0 0 chr1 87626296 87626329 -109569103 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1253 594 201 109 22 chr1 87626330 87626467 -109568965 + B1_Mur3 SINE Alu 1 149 0 2 1253 305 283 10 48 chr1 87626527 87626631 -109568801 + B1_Mur2 SINE Alu 5 104 -45 2 1253 796 242 30 6 chr1 87626544 87626710 -109568722 + B4A SINE B4 107 276 -16 2 1253 5817 187 47 34 chr1 87626801 87627976 -109567456 + RMER15-int LTR ERVL 1748 2937 -2062 2 1253 504 212 138 56 chr1 87627991 87628186 -109567246 + RMER21B LTR ERV1 300 510 -332 2 1253 2842 123 82 6 chr1 87628318 87628793 -109566639 - RLTR28 LTR ERVL -13 511 1 2 1253 976 287 48 11 chr1 87628824 87629092 -109566340 + RMER15-int LTR ERVL 2930 3207 -1792 2 1253 1903 274 89 37 chr1 87629105 87629843 -109565589 + Lx8 LINE L1 6259 7035 -438 2 1253 1958 191 41 31 chr1 87629846 87630411 -109565021 + RMER15 LTR ERVL 1 542 -33 2 1253 279 0 0 0 chr1 87630860 87630891 -109564541 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2 1253 1200 27 0 40 chr1 87630908 87631060 -109564372 + B1_Mus2 SINE Alu 2 147 0 2 1253 180 0 0 0 chr1 87631060 87631080 -109564352 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1253 258 340 71 13 chr1 87631196 87631351 -109564081 + Lx9 LINE L1 7307 7470 -174 2 1253 417 39 0 0 chr1 87631354 87631405 -109564027 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2 1253 335 337 44 29 chr1 87631593 87631798 -109563634 - L1M5 LINE L1 -1314 4832 4625 2 1253 185 132 0 26 chr1 87632354 87632393 -109563039 + C-rich Low_complexity Low_complexity 5 42 0 2 1253 337 293 114 53 chr1 87632559 87632828 -109562604 + MER34A LTR ERV1 2 349 -295 2 1253 943 262 89 31 chr1 87633415 87633765 -109561667 - ORR1D2 LTR MaLR 0 370 1 2 1253 2837 147 46 21 chr1 87633874 87634353 -109561079 - RLTR19 LTR ERVK 0 499 9 2 1253 21 0 0 0 chr1 87634370 87634391 -109561041 + AT_rich Low_complexity Low_complexity 1 21 0 2 1253 322 331 48 43 chr1 87634666 87634852 -109560580 + LTR16C LTR ERVL 79 265 -224 2 1253 1012 205 66 5 chr1 87634899 87635095 -109560337 + B3 SINE B2 2 209 -7 2 1253 360 0 0 0 chr1 87635435 87635475 -109559957 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 1253 274 79 0 0 chr1 87635500 87635538 -109559894 - B2_Mm2 SINE B2 -94 101 64 2 1253 612 194 28 50 chr1 87635579 87635715 -109559717 - B2_Mm2 SINE B2 -15 180 48 2 1253 635 296 94 25 chr1 87635715 87635916 -109559516 + B3 SINE B2 1 215 -1 2 1253 517 98 112 0 chr1 87635927 87636030 -109559402 + B2_Mm1t SINE B2 45 181 -14 2 1253 309 133 371 9 chr1 87636063 87636168 -109559264 + B2_Mm2 SINE B2 48 190 -5 2 1253 1212 36 0 0 chr1 87636171 87636310 -109559122 + B1_Mus2 SINE Alu 1 139 -8 2 1253 193 29 29 29 chr1 87636310 87636345 -109559087 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1253 517 250 8 40 chr1 87636769 87636894 -109558538 + RSINE1 SINE B4 3 123 -42 2 1253 961 124 7 27 chr1 87636946 87637095 -109558337 - B1_Mus2 SINE Alu -1 146 1 2 1253 23 54 0 0 chr1 87637342 87637379 -109558053 + AT_rich Low_complexity Low_complexity 1 37 0 2 1253 210 180 20 0 chr1 87637416 87637466 -109557966 + T-rich Low_complexity Low_complexity 1 51 0 2 1253 756 143 29 22 chr1 87637466 87637602 -109557830 - B1_Mus2 SINE Alu 0 147 11 2 1253 249 351 43 9 chr1 87637859 87637974 -109557458 + MER34 LTR ERV1 359 477 -65 2 1253 366 233 204 23 chr1 87638030 87638162 -109557270 + RSINE1 SINE B4 8 163 -2 2 1253 929 134 0 97 chr1 87638254 87638419 -109557013 + B2_Mm2 SINE B2 1 149 -46 2 1253 297 0 0 0 chr1 87638431 87638464 -109556968 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1253 297 274 123 0 chr1 87639978 87640051 -109555381 + PB1D10 SINE Alu 29 110 -7 2 1253 310 283 0 0 chr1 87640105 87640165 -109555267 - B3A SINE B2 -112 86 27 2 1253 353 70 18 0 chr1 87640173 87640230 -109555202 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 2 1253 685 189 23 8 chr1 87640233 87640366 -109555066 - B1_Mur2 SINE Alu -10 139 5 2 1253 726 317 136 24 chr1 87640415 87640745 -109554687 + MTD LTR MaLR 10 376 -43 2 1253 627 187 95 22 chr1 87640758 87640895 -109554537 - B1_Mur1 SINE Alu -2 147 1 2 1253 260 278 73 122 chr1 87640895 87640921 -109554511 - B4A SINE B4 -67 224 70 2 1253 1233 41 7 0 chr1 87640966 87641112 -109554320 - B1_Mm SINE Alu 0 147 1 2 1253 311 242 206 59 chr1 87641393 87641529 -109553903 + LTR48 LTR ERV1 329 484 -303 2 1253 368 279 154 16 chr1 87641736 87641918 -109553514 - L1MB3 LINE L1 -343 5840 5634 2 1253 1022 48 0 0 chr1 87643663 87643788 -109551644 + B1_Mm SINE Alu 23 147 0 2 1253 273 125 0 0 chr1 87643792 87643848 -109551584 + (A)n Simple_repeat Simple_repeat 1 56 0 2 1253 340 183 0 16 chr1 87644355 87644416 -109551016 + B1_Mur4 SINE Alu 13 72 -78 2 1253 265 323 125 8 chr1 87644652 87644780 -109550652 + RMER21A LTR ERV1 542 684 -263 2 1253 498 194 57 119 chr1 87644982 87645031 -109550401 + ID_B1 SINE B4 49 213 -11 3 1253 698 199 8 8 chr1 87645031 87645158 -109550274 + B1_Mur4 SINE Alu 13 139 -11 3 1253 462 79 0 0 chr1 87645158 87645221 -109550211 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 3 1253 626 231 35 0 chr1 87645222 87645365 -109550067 - B1_Mur1 SINE Alu -1 148 1 3 1253 681 266 75 16 chr1 87645439 87645532 -109549900 + ID_B1 SINE B4 1 94 -130 3 1253 237 33 0 0 chr1 87645532 87645562 -109549870 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1253 681 266 75 16 chr1 87645562 87645655 -109549777 + ID_B1 SINE B4 95 197 -27 3 1253 280 313 48 48 chr1 87645655 87645666 -109549766 + B1_Mus1 SINE Alu 27 130 -18 3 1253 214 330 110 0 chr1 87648980 87649080 -109546352 + MIRb SINE MIR 106 216 -52 3 1253 450 252 34 17 chr1 87649228 87649345 -109546087 - MLT1B LTR MaLR -157 233 115 3 1253 396 0 0 0 chr1 87649454 87649498 -109545934 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1253 468 293 152 26 chr1 87649499 87649650 -109545782 - B3 SINE B2 -45 171 2 3 1253 293 183 56 14 chr1 87649687 87649759 -109545673 - Lx8 LINE L1 -2 7471 7397 3 1253 189 278 64 43 chr1 87649819 87649913 -109545519 + L2 LINE L2 2655 2750 -669 3 1253 511 268 50 75 chr1 87650573 87650734 -109544698 + ID_B1 SINE B4 1 157 -67 3 1253 686 152 48 0 chr1 87650732 87650857 -109544575 + B1_Mur4 SINE Alu 19 149 -1 3 1253 1420 46 12 0 chr1 87650878 87651051 -109544381 + B2_Mm1a SINE B2 1 175 -18 3 1253 815 75 15 15 chr1 87651060 87651195 -109544237 + (GAA)n Simple_repeat Simple_repeat 2 136 0 3 1253 410 221 210 49 chr1 87651737 87651880 -109543552 - RMER15 LTR ERVL -74 501 336 3 1253 974 232 27 9 chr1 87651931 87652153 -109543279 - URR1A DNA MER1_type 0 226 1 3 1253 384 111 0 0 chr1 87652251 87652323 -109543109 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1253 674 307 101 27 chr1 87652510 87652673 -109542759 - MLT1C LTR MaLR -5 462 286 3 1253 767 94 0 17 chr1 87652673 87652792 -109542640 + (TTA)n Simple_repeat Simple_repeat 2 118 0 3 1253 674 263 238 48 chr1 87652792 87653008 -109542424 - MLT1C LTR MaLR -182 285 9 3 1253 662 257 176 50 chr1 87653574 87653640 -109541792 - MTEb LTR MaLR -1 378 312 3 1253 599 239 217 22 chr1 87653640 87653820 -109541612 + B3 SINE B2 1 215 -1 3 1253 662 257 176 50 chr1 87653820 87654032 -109541400 - MTEb LTR MaLR -68 311 65 3 1253 201 300 43 0 chr1 87655419 87655489 -109539943 + L2a LINE L2 3354 3426 0 3 1253 609 14 0 0 chr1 87655668 87655738 -109539694 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1253 7666 202 67 77 chr1 87655857 87656191 -109539241 - Lx6 LINE L1 -1 7459 7089 3 1253 1095 92 11 11 chr1 87656191 87656367 -109539065 + (GAGAA)n Simple_repeat Simple_repeat 5 180 0 3 1253 7666 202 67 77 chr1 87656367 87657107 -109538325 - Lx6 LINE L1 -372 7088 6445 3 1253 3449 50 38 2 chr1 87657107 87657528 -109537904 + RLTR10C LTR ERVK 1 436 0 3 1253 7666 175 50 54 chr1 87657528 87658469 -109536963 - Lx6 LINE L1 -1016 6444 5424 3 1253 503 304 61 18 chr1 87658748 87658912 -109536520 + ID_B1 SINE B4 54 224 0 3 1253 213 241 0 18 chr1 87660265 87660320 -109535112 + CT-rich Low_complexity Low_complexity 2 55 0 3 1253 905 83 98 0 chr1 87660334 87660466 -109534966 - B1_Mur4 SINE Alu -1 149 5 3 1253 302 301 78 52 chr1 87660519 87660673 -109534759 - MIRb SINE MIR -35 233 76 3 1253 264 59 0 0 chr1 87660812 87660846 -109534586 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1253 423 257 45 9 chr1 87661471 87661581 -109533851 - ID_B1 SINE B4 -9 215 102 3 1253 805 75 0 0 chr1 87661891 87661997 -109533435 + B2_Mm2 SINE B2 2 107 -88 3 1253 788 223 0 13 chr1 87662102 87662252 -109533180 + B1_Mur2 SINE Alu 1 148 -1 3 1253 1390 131 53 75 chr1 87662342 87662401 -109533031 - MTC LTR MaLR -162 259 212 3 1253 1212 68 0 0 chr1 87662401 87662548 -109532884 - B1_Mus2 SINE Alu 0 147 1 3 1253 1390 131 53 75 chr1 87662548 87662753 -109532679 - MTC LTR MaLR -210 211 1 3 1253 297 0 0 0 chr1 87663616 87663649 -109531783 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 3 1253 310 281 101 62 chr1 87663653 87663782 -109531650 - L2a LINE L2 -10 3416 3283 3 1253 783 167 13 46 chr1 87664065 87664216 -109531216 - B1_Mus1 SINE Alu -1 147 2 3 1253 617 158 418 0 chr1 87664553 87664711 -109530721 - ID_B1 SINE B4 0 224 1 3 1253 218 57 56 19 chr1 87664725 87664779 -109530653 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 1253 470 245 29 0 chr1 87664797 87664899 -109530533 - ID_B1 SINE B4 -2 222 118 3 1253 441 0 0 0 chr1 87664911 87664960 -109530472 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1253 396 0 0 0 chr1 87664960 87665004 -109530428 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1253 322 253 13 39 chr1 87665005 87665083 -109530349 - B4 SINE B4 -27 265 190 3 1253 504 277 172 34 chr1 87665080 87665342 -109530090 - MLT1F2 LTR MaLR -114 446 149 3 1253 913 145 14 14 chr1 87665452 87665599 -109529833 - B1_Mur3 SINE Alu -1 148 2 3 1253 2070 146 131 4 chr1 87665865 87666238 -109529194 + MTC LTR MaLR 1 412 -9 3 1253 324 191 14 14 chr1 87666253 87666322 -109529110 + ID4_ SINE ID 1 69 -14 3 1253 609 27 0 0 chr1 87666326 87666401 -109529031 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1253 613 219 0 99 chr1 87666405 87666542 -109528890 + B1F SINE Alu 12 140 -9 3 1253 207 0 0 0 chr1 87666542 87666565 -109528867 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1253 613 219 0 99 chr1 87666565 87666579 -109528853 + B1F SINE Alu 141 148 -1 3 1253 327 49 0 0 chr1 87666581 87666622 -109528810 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1253 1147 68 0 20 chr1 87666626 87666777 -109528655 - B1_Mus1 SINE Alu 0 148 1 3 1253 495 48 0 0 chr1 87667876 87667938 -109527494 + (CGTG)n Simple_repeat Simple_repeat 3 64 0 3 1253 497 257 26 53 chr1 87668162 87668351 -109527081 + B3A SINE B2 11 194 -4 3 1253 1021 102 20 0 chr1 87668938 87669085 -109526347 + B1_Mur4 SINE Alu 1 150 0 3 1253 410 36 18 0 chr1 87669088 87669144 -109526288 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3 1253 775 188 21 0 chr1 87669190 87669334 -109526098 + B1_Mus2 SINE Alu 1 147 0 3 1253 542 15 15 0 chr1 87669647 87669714 -109525718 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 3 1253 1156 56 14 0 chr1 87669716 87669858 -109525574 - B1_Mus2 SINE Alu 0 147 4 3 1253 577 205 18 0 chr1 87670103 87670215 -109525217 + PB1D9 SINE Alu 2 115 -5 3 1253 375 300 57 7 chr1 87670238 87670379 -109525053 + RSINE1 SINE B4 14 161 -4 3 1253 680 241 0 0 chr1 87670819 87670956 -109524476 + ID_B1 SINE B4 80 216 -8 3 1253 242 246 0 14 chr1 87672438 87672508 -109522924 + T-rich Low_complexity Low_complexity 2 70 0 3 1253 486 321 31 12 chr1 87672515 87672676 -109522756 - B4A SINE B4 -44 248 85 3 1253 279 79 0 0 chr1 87672878 87672916 -109522516 + (CAG)n Simple_repeat Simple_repeat 2 39 0 3 1253 450 270 66 0 chr1 87672996 87673133 -109522299 - MTEa LTR MaLR -231 148 3 3 1253 236 224 0 33 chr1 87673146 87673206 -109522226 - MTEb LTR MaLR -14 365 308 3 1253 869 130 61 0 chr1 87673287 87673418 -109522014 - B1_Mus1 SINE Alu -9 139 1 3 1253 360 0 0 0 chr1 87673449 87673489 -109521943 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1253 1210 41 0 20 chr1 87673489 87673627 -109521805 - B1_Mus2 SINE Alu -9 138 1 3 1253 369 187 113 70 chr1 87674429 87674544 -109520888 + B1F2 SINE Alu 28 147 -2 3 1253 784 138 0 15 chr1 87674547 87674679 -109520753 + B3 SINE B2 1 130 -86 3 1253 2090 137 97 6 chr1 87675005 87675366 -109520066 - ORR1B1 LTR MaLR 0 394 1 3 1253 361 169 133 31 chr1 87676465 87676563 -109518869 + ORR1B2 LTR MaLR 1 108 -259 3 1253 1763 149 12 28 chr1 87676569 87676894 -109518538 + ORR1B2 LTR MaLR 48 367 0 3 1253 831 254 36 10 chr1 87676894 87677082 -109518350 - ID_B1 SINE B4 -18 206 14 3 1253 683 263 0 31 chr1 87677060 87677256 -109518176 - B4A SINE B4 -102 190 1 3 1253 868 171 14 7 chr1 87677415 87677562 -109517870 + B1_Mur4 SINE Alu 1 148 -2 3 1253 249 108 0 0 chr1 87677645 87677682 -109517750 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1253 1132 75 0 20 chr1 87677682 87677832 -109517600 - B1_Mm SINE Alu 0 147 1 3 1253 289 259 0 105 chr1 87678197 87678217 -109517215 - ID_B1 SINE B4 -60 164 82 3 1253 305 250 0 14 chr1 87678217 87678290 -109517142 - PB1D10 SINE Alu -45 72 1 3 1253 358 266 83 0 chr1 87678380 87678489 -109516943 + PB1D7 SINE Alu 3 120 0 3 1253 655 252 26 7 chr1 87678564 87678716 -109516716 + RSINE1 SINE B4 5 159 -6 3 1253 393 75 0 0 chr1 87679224 87679277 -109516155 + (TTTTC)n Simple_repeat Simple_repeat 5 57 0 3 1253 1015 87 43 12 chr1 87679277 87679441 -109515991 - B2_Mm2 SINE B2 0 195 27 3 1253 1180 69 0 0 chr1 87679460 87679605 -109515827 - B1_Mus1 SINE Alu 0 148 4 3 1253 728 324 32 68 chr1 87679789 87680260 -109515172 - MER31-int LTR ERV1 -995 3941 3488 3 1253 788 298 68 60 chr1 87680284 87680424 -109515008 - MTD LTR MaLR -14 405 277 3 1253 985 194 325 82 chr1 87680424 87680809 -109514623 + MT2A LTR ERVL 3 491 -42 3 1253 207 0 0 0 chr1 87680809 87680832 -109514600 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1253 985 194 325 82 chr1 87680832 87680873 -109514559 + MT2A LTR ERVL 492 532 -1 3 1253 788 298 68 60 chr1 87680873 87681129 -109514303 - MTD LTR MaLR -143 276 6 3 1253 521 59 0 23 chr1 87681191 87681278 -109514154 + L1Md_F3 LINE L1 6500 6584 0 3 1253 1246 48 0 0 chr1 87681287 87681433 -109513999 + B1_Mm SINE Alu 2 147 0 3 1253 631 162 9 9 chr1 87681452 87681564 -109513868 - B1_Mur4 SINE Alu -19 131 20 3 1253 276 215 41 51 chr1 87681706 87681804 -109513628 - MER31-int LTR ERV1 -1785 3571 3475 3 1253 573 280 7 7 chr1 87681947 87682091 -109513341 + RSINE1 SINE B4 4 147 -18 3 1253 780 232 0 0 chr1 87682145 87682283 -109513149 + B1_Mur1 SINE Alu 5 142 -7 4 1253 1537 67 297 27 chr1 87682432 87682691 -109512741 - ORR1A4 LTR MaLR 0 329 1 4 1253 641 203 22 0 chr1 87683000 87683138 -109512294 + B1F SINE Alu 9 149 0 4 1253 6883 32 8 1 chr1 87683183 87683987 -109511445 - L1Md_F2 LINE L1 -1 6581 5773 4 1253 226 283 108 45 chr1 87684558 87684609 -109510823 - MLT1D LTR MaLR -378 127 70 4 1253 2351 165 171 58 chr1 87684609 87685157 -109510275 - RMER19C LTR ERVK -1 610 1 4 1253 226 283 108 45 chr1 87685157 87685216 -109510216 - MLT1D LTR MaLR -436 69 10 4 1253 1658 16 21 0 chr1 87685231 87685419 -109510013 - B2_Mm1a SINE B2 0 193 2 4 1253 413 241 0 0 chr1 87685517 87685604 -109509828 - B3 SINE B2 -5 211 125 4 1253 383 305 30 23 chr1 87685647 87685778 -109509654 + RSINE1 SINE B4 5 136 -29 4 1253 983 79 49 14 chr1 87686021 87686163 -109509269 - B1_Mus1 SINE Alu -1 147 1 4 1253 231 320 41 10 chr1 87686458 87686556 -109508876 + L2 LINE L2 2672 2772 -647 4 1254 343 275 12 0 chr1 87688030 87688110 -109507322 - ID_B1 SINE B4 -54 170 90 4 1254 258 295 30 50 chr1 87688110 87688121 -109507311 - PB1D10 SINE Alu -19 60 1 4 1254 392 288 108 0 chr1 87688190 87688295 -109507137 - B1F2 SINE Alu -10 139 23 4 1254 1921 164 5 127 chr1 87688295 87688594 -109506838 + RLTR14 LTR ERV1 1 250 -132 4 1254 201 74 0 0 chr1 87688594 87688621 -109506811 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1254 1921 164 5 127 chr1 87688621 87688753 -109506679 + RLTR14 LTR ERV1 251 379 -3 4 1254 745 59 0 0 chr1 87688971 87689072 -109506360 - B1_Mus2 SINE Alu -1 146 46 4 1254 951 35 0 0 chr1 87689354 87689469 -109505963 + (TC)n Simple_repeat Simple_repeat 2 116 0 4 1254 535 207 42 17 chr1 87689498 87689616 -109505816 - ID_B1 SINE B4 -13 211 91 4 1254 24 32 0 0 chr1 87690209 87690240 -109505192 + GC_rich Low_complexity Low_complexity 1 31 0 4 1254 198 0 0 0 chr1 87691940 87691962 -109503470 + (CTG)n Simple_repeat Simple_repeat 1 22 0 4 1254 189 0 0 0 chr1 87692013 87692034 -109503398 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 4 1254 222 293 173 0 chr1 87692157 87692232 -109503200 - PB1D10 SINE Alu -6 111 24 4 1254 189 74 0 0 chr1 87692363 87692390 -109503042 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1254 413 277 83 8 chr1 87692394 87692514 -109502918 - B1F SINE Alu -8 141 13 4 1254 441 193 141 105 chr1 87692755 87692946 -109502486 + B3A SINE B2 1 198 0 4 1254 230 106 21 0 chr1 87693095 87693142 -109502290 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1254 686 146 106 0 chr1 87693142 87693265 -109502167 - B1_Mus2 SINE Alu -1 146 11 4 1254 1140 68 14 0 chr1 87693284 87693430 -109502002 - B1_Mus1 SINE Alu 0 148 1 4 1254 533 254 43 7 chr1 87693430 87693568 -109501864 - B1F1 SINE Alu -1 148 5 4 1254 411 91 31 166 chr1 87693990 87694115 -109501317 - B1_Mur4 SINE Alu 0 150 34 4 1254 240 319 127 17 chr1 87694511 87694629 -109500803 - B1F1 SINE Alu -14 135 5 4 1254 193 321 0 0 chr1 87695408 87695464 -109499968 - MIR SINE MIR -97 111 56 4 1254 298 271 126 21 chr1 87695765 87695908 -109499524 - MIRb SINE MIR -95 173 16 4 1254 1380 99 0 5 chr1 87696005 87696197 -109499235 + B2_Mm2 SINE B2 2 192 -3 4 1254 763 194 21 7 chr1 87697304 87697449 -109497983 - B1_Mur3 SINE Alu -2 147 1 4 1254 362 338 32 86 chr1 87697809 87698029 -109497403 - ID_B1 SINE B4 -16 208 1 4 1254 1523 47 5 10 chr1 87698252 87698445 -109496987 - B2_Mm1t SINE B2 0 193 2 4 1254 457 276 27 27 chr1 87698456 87698605 -109496827 - B1F2 SINE Alu 0 149 1 4 1254 797 222 23 12 chr1 87698633 87698806 -109496626 - B3 SINE B2 -3 213 39 4 1254 478 263 9 9 chr1 87699497 87699612 -109495820 + PB1D10 SINE Alu 1 115 -2 4 1254 488 169 396 7 chr1 87699660 87699809 -109495623 - B3 SINE B2 -9 207 1 4 1254 23 33 0 0 chr1 87699809 87699839 -109495593 + AT_rich Low_complexity Low_complexity 1 30 0 4 1254 225 243 95 54 chr1 87700096 87700116 -109495316 + ID SINE ID 66 88 -136 4 1254 371 222 74 0 chr1 87700116 87700197 -109495235 + B1_Mur3 SINE Alu 2 88 -61 4 1254 616 284 43 0 chr1 87700245 87700407 -109495025 - B3A SINE B2 -28 170 2 4 1254 3962 37 21 0 chr1 87700481 87700946 -109494486 + MT2C_Mm LTR ERVL 1 475 0 4 1254 455 184 17 76 chr1 87701679 87701797 -109493635 + MTD LTR MaLR 14 124 -295 4 1254 28 29 0 0 chr1 87702531 87702566 -109492866 + AT_rich Low_complexity Low_complexity 1 35 0 4 1254 395 252 18 36 chr1 87702581 87702692 -109492740 - RSINE1 SINE B4 0 165 57 4 1254 307 290 63 16 chr1 87702793 87702919 -109492513 - ID_B1 SINE B4 -9 215 84 4 1254 564 153 71 18 chr1 87702807 87702920 -109492512 - B1_Mus2 SINE Alu -27 120 2 4 1254 272 224 0 49 chr1 87703042 87703103 -109492329 + ID4_ SINE ID 26 83 0 4 1254 344 111 0 16 chr1 87703883 87703947 -109491485 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1254 326 23 23 0 chr1 87704026 87704069 -109491363 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 4 1254 235 111 179 36 chr1 87704071 87704127 -109491305 - B1_Mur2 SINE Alu -12 137 74 4 1254 298 295 58 97 chr1 87704177 87704331 -109491101 - B4A SINE B4 -136 156 9 4 1254 1704 21 0 0 chr1 87704674 87704861 -109490571 - B2_Mm1t SINE B2 -6 187 1 4 1254 256 295 45 64 chr1 87705125 87705277 -109490155 + B4A SINE B4 25 171 -53 4 1254 303 280 112 0 chr1 87705203 87705310 -109490122 + B1F SINE Alu 13 131 -18 4 1254 302 238 139 0 chr1 87705636 87705737 -109489695 + PB1D9 SINE Alu 2 116 -4 4 1254 941 147 175 16 chr1 87706777 87706971 -109488461 + URR1A DNA MER1_type 1 225 -1 4 1254 21 0 0 0 chr1 87707663 87707684 -109487748 + AT_rich Low_complexity Low_complexity 1 21 0 4 1254 551 267 75 0 chr1 87707704 87707850 -109487582 - RSINE1 SINE B4 -6 159 3 4 1254 785 286 5 14 chr1 87707863 87708076 -109487356 - B3 SINE B2 -4 212 2 4 1254 494 290 41 63 chr1 87708470 87708691 -109486741 - B3 SINE B2 0 216 1 4 1254 281 276 124 0 chr1 87708712 87708817 -109486615 + Charlie9 DNA MER1_type 4 121 -2636 4 1254 274 303 122 50 chr1 87708927 87709066 -109486366 - B1F2 SINE Alu 0 149 1 4 1254 452 294 36 9 chr1 87708958 87709068 -109486364 - ID_B1 SINE B4 -32 192 80 4 1254 1134 41 0 58 chr1 87709271 87709426 -109486006 - B1_Mm SINE Alu -1 146 1 4 1254 226 230 25 63 chr1 87709473 87709552 -109485880 + L3 LINE CR1 3594 3669 -820 4 1254 318 310 152 21 chr1 87709582 87709727 -109485705 - RSINE1 SINE B4 0 165 2 4 1254 184 315 27 14 chr1 87709959 87710033 -109485399 + L3 LINE CR1 3958 4032 -457 4 1254 239 314 0 0 chr1 87710177 87710247 -109485185 - ID4_ SINE ID -13 70 1 4 1254 420 265 30 20 chr1 87710247 87710347 -109485085 - PB1D10 SINE Alu -2 115 15 4 1254 182 284 118 59 chr1 87710541 87710676 -109484756 - L2 LINE L2 -459 2960 2818 4 1254 579 15 0 0 chr1 87710818 87710886 -109484546 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1254 471 78 0 0 chr1 87711032 87711096 -109484336 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1254 378 0 0 0 chr1 87711141 87711183 -109484249 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1254 252 326 43 11 chr1 87711213 87711306 -109484126 - MT2B LTR ERVL -345 256 161 4 1254 318 288 11 2 chr1 87711772 87711871 -109483561 + B3A SINE B2 2 99 -94 4 1254 563 192 146 0 chr1 87713346 87713476 -109481956 + B1_Mur4 SINE Alu 2 150 0 4 1254 283 296 0 0 chr1 87714763 87714834 -109480598 - B3 SINE B2 -137 79 9 4 1254 236 271 97 61 chr1 87715208 87715322 -109480110 - PB1D7 SINE Alu 0 120 3 4 1254 1130 95 0 0 chr1 87715609 87715756 -109479676 - B1_Mus1 SINE Alu 0 148 2 4 1254 463 189 18 62 chr1 87716426 87716539 -109478893 + B3A SINE B2 90 197 -1 4 1254 268 227 45 0 chr1 87717218 87717284 -109478148 - ID4_ SINE ID -11 72 4 4 1254 608 188 92 15 chr1 87717337 87717467 -109477965 - B1_Mus2 SINE Alu -6 141 2 4 1254 508 201 138 42 chr1 87717468 87717707 -109477725 - Charlie1 DNA MER1_type -5 2776 2515 4 1254 337 306 24 16 chr1 87717804 87717927 -109477505 + B3 SINE B2 59 182 -34 4 1254 2128 38 114 0 chr1 87717988 87718250 -109477182 + RLTR10B LTR ERVK 1 292 0 4 1254 233 339 26 35 chr1 87718536 87718652 -109476780 - Charlie1 DNA MER1_type -1175 1606 1492 4 1254 462 231 144 6 chr1 87718935 87719109 -109476323 + MER20 DNA MER1_type 14 211 -8 4 1254 362 222 0 0 chr1 87719232 87719304 -109476128 + B1_Mur2 SINE Alu 77 148 -1 4 1254 837 232 92 10 chr1 87719928 87720230 -109475202 - ORR1D1 LTR MaLR 0 384 8 4 1254 663 281 159 11 chr1 87720546 87721043 -109474389 + L1ME2 LINE L1 5511 6075 -104 4 1254 211 50 75 0 chr1 87721943 87721983 -109473449 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1254 207 100 0 0 chr1 87722005 87722035 -109473397 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1254 516 205 76 30 chr1 87722723 87722854 -109472578 - B1_Mur3 SINE Alu -8 141 5 4 1254 605 204 0 9 chr1 87724139 87724253 -109471179 + RMER19B LTR ERVK 143 255 -647 4 1254 1037 36 0 0 chr1 87724247 87724385 -109471047 + B1_Mm SINE Alu 10 147 0 4 1254 2925 150 152 8 chr1 87724409 87724819 -109470613 + RMER19B LTR ERVK 225 706 -196 4 1254 186 43 0 0 chr1 87724819 87724842 -109470590 + (CTG)n Simple_repeat Simple_repeat 3 25 0 4 1254 2925 150 152 8 chr1 87724842 87725024 -109470408 + RMER19B LTR ERVK 707 902 0 4 1254 215 103 26 0 chr1 87725164 87725203 -109470229 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 5 1254 970 180 97 5 chr1 87725300 87725507 -109469925 - URR1A DNA MER1_type 0 226 1 5 1254 204 179 0 0 chr1 87726523 87726562 -109468870 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1254 252 319 201 45 chr1 87726626 87727313 -109468119 - L2 LINE L2 -475 2944 2151 5 1254 414 242 72 36 chr1 87727829 87727996 -109467436 - L1MB8 LINE L1 0 6178 6006 5 1254 544 250 79 29 chr1 87728504 87728644 -109466788 - B1_Mur1 SINE Alu 0 149 3 5 1254 819 143 29 43 chr1 87728804 87728943 -109466489 + B1_Mur4 SINE Alu 1 137 -13 5 1254 357 169 0 0 chr1 87730162 87730221 -109465211 - B1_Mur2 SINE Alu -5 144 86 5 1254 297 279 51 60 chr1 87730242 87730459 -109464973 - L1MEc LINE L1 -4754 1646 1432 5 1254 241 259 60 24 chr1 87730567 87730650 -109464782 - B3A SINE B2 -107 91 6 5 1254 881 223 15 5 chr1 87730689 87730887 -109464545 - B3 SINE B2 -14 202 3 5 1254 571 235 30 15 chr1 87730957 87731091 -109464341 - B1_Mur4 SINE Alu 0 150 15 5 1254 186 133 0 0 chr1 87731713 87731743 -109463689 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 5 1254 269 257 137 7 chr1 87732336 87732489 -109462943 + MER102a DNA MER1_type 35 207 -123 5 1254 188 67 0 32 chr1 87733049 87733080 -109462352 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1254 440 295 186 80 chr1 87735631 87735970 -109459462 - MTE2b LTR MaLR -4 375 1 5 1254 282 266 123 15 chr1 87736005 87736135 -109459297 - L1MC5 LINE L1 -1057 6904 6761 5 1254 289 261 277 21 chr1 87737136 87737277 -109458155 - MER3 DNA MER1_type -9 200 24 5 1254 287 260 12 38 chr1 87737621 87737701 -109457731 + ID4 SINE ID 4 81 -2 5 1254 1138 65 0 0 chr1 87738433 87738571 -109456861 - B1_Mus1 SINE Alu -9 139 2 5 1254 212 0 36 0 chr1 87738740 87738768 -109456664 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1254 267 309 47 73 chr1 87739215 87739365 -109456067 + MamRep137 DNA TcMar? 139 284 -160 5 1254 279 241 45 11 chr1 87739960 87740048 -109455384 - L2a LINE L2 -26 3400 3310 5 1254 202 333 23 100 chr1 87740556 87740686 -109454746 - MIRm SINE MIR 0 276 157 5 1254 358 273 28 31 chr1 87741597 87741758 -109453674 + MIR3 SINE MIR 29 186 -22 5 1254 738 164 99 0 chr1 87742354 87742525 -109452907 + URR1A DNA MER1_type 17 204 -22 5 1254 772 157 90 0 chr1 87742525 87742659 -109452773 + B1_Mus1 SINE Alu 3 148 0 5 1254 258 83 0 0 chr1 87742690 87742726 -109452706 + URR1A DNA MER1_type 190 225 -1 5 1254 455 118 309 0 chr1 87743602 87743712 -109451720 + URR1A DNA MER1_type 83 226 0 5 1254 182 154 51 0 chr1 87744278 87744317 -109451115 - MIR SINE MIR -207 55 15 5 1254 207 0 0 0 chr1 87746894 87746917 -109448515 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1254 24 0 0 0 chr1 87748117 87748141 -109447291 + AT_rich Low_complexity Low_complexity 1 24 0 5 1254 354 156 0 0 chr1 87749267 87749331 -109446101 + CT-rich Low_complexity Low_complexity 2 65 0 5 1254 233 57 0 28 chr1 87750192 87750228 -109445204 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1254 203 167 0 0 chr1 87750241 87750283 -109445149 + T-rich Low_complexity Low_complexity 1 42 0 5 1254 1090 116 129 52 chr1 87751620 87751830 -109443602 + URR1A DNA MER1_type 1 226 0 5 1254 450 248 35 9 chr1 87751965 87752079 -109443353 - PB1D10 SINE Alu 0 117 1 5 1254 182 91 0 29 chr1 87752526 87752560 -109442872 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 5 1254 252 0 0 0 chr1 87752650 87752678 -109442754 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1254 396 0 0 0 chr1 87752678 87752722 -109442710 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1254 218 147 0 0 chr1 87752806 87752840 -109442592 + RSINE1 SINE B4 55 88 -77 5 1254 500 292 107 42 chr1 87752904 87753401 -109442031 + L1M4b LINE L1 2294 2890 -4212 5 1254 230 195 0 0 chr1 87753575 87753616 -109441816 + L1M4b LINE L1 3086 3126 -3880 5 1254 287 214 114 0 chr1 87753634 87753704 -109441728 + B1F1 SINE Alu 67 144 -5 5 1254 314 287 0 31 chr1 87753825 87753922 -109441510 + MTD LTR MaLR 44 137 -282 5 1254 711 205 163 59 chr1 87754317 87754519 -109440913 - B4 SINE B4 -69 223 1 5 1254 495 193 81 40 chr1 87754742 87754764 -109440668 + B4 SINE B4 70 96 -196 5 1254 783 90 49 0 chr1 87754764 87754886 -109440546 + B1_Mur1 SINE Alu 2 129 -20 5 1254 258 169 35 24 chr1 87755039 87755124 -109440308 + (TAA)n Simple_repeat Simple_repeat 3 88 0 5 1254 1123 48 0 46 chr1 87755161 87755313 -109440119 - B1_Mm SINE Alu -1 146 2 5 1254 265 244 179 37 chr1 87755417 87755579 -109439853 + L1MEc LINE L1 1790 1974 -4426 5 1254 453 261 191 18 chr1 87755970 87756138 -109439294 + B3 SINE B2 10 206 -10 5 1254 539 250 168 7 chr1 87757018 87757167 -109438265 + ID_B1 SINE B4 3 175 -49 5 1254 233 136 68 0 chr1 87757179 87757221 -109438211 - MTD LTR MaLR -12 407 363 5 1254 336 159 0 28 chr1 87757221 87757292 -109438140 + B1F2 SINE Alu 1 69 -80 5 1254 453 81 0 0 chr1 87757302 87757364 -109438068 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 5 1254 1094 113 79 0 chr1 87757366 87757543 -109437889 - B2_Mm2 SINE B2 0 195 5 5 1254 753 236 74 48 chr1 87757543 87757774 -109437658 + MTD LTR MaLR 139 375 -44 5 1254 313 39 19 19 chr1 87757780 87757832 -109437600 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 5 1254 1100 102 7 0 chr1 87757834 87757981 -109437451 - B1_Mus1 SINE Alu 0 148 1 5 1254 975 254 37 22 chr1 87758020 87758290 -109437142 - ORR1D2 LTR MaLR -7 363 90 5 1254 696 257 42 16 chr1 87758502 87758746 -109436686 + LTRIS4 LTR ERV1 276 507 0 5 1254 835 245 37 136 chr1 87758748 87759264 -109436168 + MuRRS4-int LTR ERV1 5 511 -6941 5 1254 1278 27 0 0 chr1 87759264 87759410 -109436022 + B1_Mm SINE Alu 2 147 0 5 1254 305 304 79 89 chr1 87759410 87759460 -109435972 + MuRRS4-int LTR ERV1 512 548 -6904 5 1254 1837 194 57 3 chr1 87759842 87760214 -109435218 + MuRRS4-int LTR ERV1 340 731 -4332 5 1254 5132 110 30 18 chr1 87760214 87760982 -109434450 + RMER16-int LTR ERVK 663 1439 -3967 5 1254 641 124 96 17 chr1 87760974 87761089 -109434343 + MuRRS4-int LTR ERV1 750 873 -4190 5 1254 796 153 139 0 chr1 87761089 87761226 -109434206 - LSU-rRNA_Hsa rRNA rRNA -1365 3670 3515 5 1254 795 228 242 7 chr1 87761285 87761738 -109433694 + MuRRS4-int LTR ERV1 885 1444 -3619 5 1254 6565 110 60 123 chr1 87761766 87761797 -109433635 + MuRRS4-int LTR ERV1 1104 1136 -2163 5 1254 261 0 0 0 chr1 87761797 87761826 -109433606 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1254 7654 87 75 31 chr1 87761826 87763089 -109432343 + MuRRS4-int LTR ERV1 1137 3033 -2030 5 1254 3078 235 23 18 chr1 87763420 87764126 -109431306 + MuRRS4-int LTR ERV1 3563 4271 -792 5 1254 785 209 138 0 chr1 87764117 87764327 -109431105 + MuRRS4-int LTR ERV1 4788 5026 -37 5 1254 1423 91 14 5 chr1 87764327 87764537 -109430895 + LTRIS2 LTR ERV1 10 221 -343 5 1254 1033 257 30 44 chr1 87764543 87764881 -109430551 + MuRRS4-int LTR ERV1 4700 5032 -31 5 1254 699 261 37 46 chr1 87765094 87765247 -109430185 + LTRIS4 LTR ERV1 276 424 -95 5 1254 2041 107 9 51 chr1 87765247 87765583 -109429849 + RLTRETN_Mm LTR ERVK 1 322 0 5 1254 699 256 36 40 chr1 87765583 87765680 -109429752 + LTRIS4 LTR ERV1 407 507 0 5 1254 373 173 150 0 chr1 87765680 87765770 -109429662 - ORR1D2 LTR MaLR -260 110 8 5 1254 697 222 64 16 chr1 87765905 87765975 -109429457 + ID SINE ID 2 80 -144 5 1254 938 25 0 0 chr1 87765975 87766095 -109429337 + B1_Mm SINE Alu 1 120 -27 5 1254 732 107 25 0 chr1 87767012 87767133 -109428299 + B1_Mus1 SINE Alu 3 126 -22 5 1254 1951 146 90 79 chr1 87767174 87767606 -109427826 + RLTR9B LTR ERVK 1 437 0 5 1254 260 200 17 0 chr1 87767691 87767751 -109427681 - MER53 DNA hAT -98 95 35 5 1254 689 189 25 0 chr1 87768203 87768325 -109427107 + B3 SINE B2 6 130 -86 5 1254 3400 170 56 65 chr1 87768443 87768984 -109426448 + RMER17B LTR ERVK 1 571 -387 5 1254 348 24 0 0 chr1 87768984 87769025 -109426407 + (CCA)n Simple_repeat Simple_repeat 2 42 0 5 1254 3400 206 60 86 chr1 87769025 87769496 -109425936 + RMER17B LTR ERVK 503 958 0 5 1254 222 184 41 0 chr1 87769497 87769546 -109425886 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 5 1254 1978 106 42 60 chr1 87770137 87770469 -109424963 + ORR1A4 LTR MaLR 1 326 -3 5 1254 253 262 55 18 chr1 87770711 87770754 -109424678 - ORR1E LTR MaLR 0 379 317 5 1254 230 0 33 0 chr1 87770754 87770784 -109424648 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1254 253 351 43 66 chr1 87770784 87771007 -109424425 - ORR1E LTR MaLR -43 316 100 5 1254 377 273 5 5 chr1 87771204 87771422 -109424010 + (CA)n Simple_repeat Simple_repeat 1 218 0 5 1254 1662 135 85 7 chr1 87772027 87772332 -109423100 - IAPEY3_LTR LTR ERVK -3 329 1 5 1254 1540 183 28 43 chr1 87772367 87772692 -109422740 - IAPEY3-int LTR ERVK -16 7664 7345 5 1254 44595 88 16 1 chr1 87772720 87779885 -109415547 - IAPEY3-int LTR ERVK -417 7263 3 5 1254 1793 136 86 3 chr1 87779890 87780192 -109415240 - IAPEY3_LTR LTR ERVK -5 327 1 5 1254 865 276 54 54 chr1 87780216 87780495 -109414937 - B4 SINE B4 -2 290 12 5 1254 207 0 0 0 chr1 87780538 87780561 -109414871 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1254 1248 42 0 0 chr1 87780561 87780704 -109414728 - B1_Mm SINE Alu -3 144 2 5 1254 592 229 138 25 chr1 87781366 87781615 -109413817 + RLTR10A LTR ERVK 114 411 0 5 1254 230 204 19 0 chr1 87781987 87782041 -109413391 + L1M5 LINE L1 5838 5892 -232 5 1254 256 179 53 18 chr1 87782052 87782109 -109413323 + B1F1 SINE Alu 1 59 -90 5 1254 226 231 0 19 chr1 87782062 87782115 -109413317 + ID_B1 SINE B4 95 146 -78 5 1254 243 79 0 0 chr1 87782164 87782202 -109413230 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1254 1341 30 0 18 chr1 87782202 87782363 -109413069 - B2_Mm1a SINE B2 -33 160 1 5 1254 424 275 88 73 chr1 87782488 87782692 -109412740 + MLT1B LTR MaLR 16 222 -168 5 1254 29 0 0 0 chr1 87782925 87782954 -109412478 + AT_rich Low_complexity Low_complexity 1 29 0 5 1254 195 69 0 0 chr1 87782995 87783024 -109412408 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1254 189 0 0 0 chr1 87783389 87783410 -109412022 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1254 581 258 109 0 chr1 87783424 87783552 -109411880 - RSINE1 SINE B4 -13 152 11 5 1254 23 33 0 0 chr1 87783731 87783761 -109411671 + AT_rich Low_complexity Low_complexity 1 30 0 5 1254 553 150 94 86 chr1 87783768 87783885 -109411547 + PB1D9 SINE Alu 1 118 -2 6 1254 284 224 92 23 chr1 87783982 87784069 -109411363 - B1F1 SINE Alu -17 132 40 6 1254 465 262 159 16 chr1 87784108 87784290 -109411142 - 7SLRNA srpRNA srpRNA -97 217 10 6 1254 275 104 21 0 chr1 87784642 87784690 -109410742 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1254 665 270 50 17 chr1 87784913 87785094 -109410338 - MER20 DNA MER1_type -4 215 29 6 1254 710 243 4 173 chr1 87785195 87785368 -109410064 + ID_B1 SINE B4 2 155 -69 6 1254 1021 185 82 0 chr1 87785368 87785563 -109409869 + B3 SINE B2 2 212 -4 6 1254 710 243 4 173 chr1 87785563 87785643 -109409789 + ID_B1 SINE B4 156 212 -12 6 1254 24 32 0 0 chr1 87786386 87786417 -109409015 + AT_rich Low_complexity Low_complexity 1 31 0 6 1254 226 111 67 0 chr1 87786820 87786865 -109408567 - MT2A LTR ERVL -4 529 482 6 1254 387 105 0 0 chr1 87786872 87786929 -109408503 + (TATG)n Simple_repeat Simple_repeat 4 60 0 6 1254 1313 196 187 98 chr1 87786960 87787419 -109408013 - MT2A LTR ERVL -33 500 1 6 1254 803 252 125 38 chr1 87787646 87787910 -109407522 + B4A SINE B4 5 291 -1 6 1254 228 67 0 0 chr1 87787931 87787961 -109407471 + (CATG)n Simple_repeat Simple_repeat 3 32 0 6 1254 364 317 117 20 chr1 87788492 87788791 -109406641 + L1ME3A LINE L1 5739 6066 -107 6 1254 3804 193 33 13 chr1 87788923 87789261 -109406171 + MERVL_2A-int LTR ERVL 3726 4069 -1692 6 1254 3549 45 28 16 chr1 87789261 87789692 -109405740 + RLTR10C LTR ERVK 1 436 0 6 1254 3804 193 33 13 chr1 87789692 87790121 -109405311 + MERVL_2A-int LTR ERVL 4070 4508 -1253 6 1254 438 0 48 0 chr1 87794166 87794228 -109401204 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1254 399 21 0 0 chr1 87794766 87794814 -109400618 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1254 216 0 0 0 chr1 87794947 87794971 -109400461 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1254 210 150 0 0 chr1 87795503 87795543 -109399889 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1254 261 139 0 0 chr1 87795704 87795747 -109399685 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1254 349 256 46 39 chr1 87796539 87796669 -109398763 - LTR48 LTR ERV1 -39 748 618 6 1254 984 238 147 69 chr1 87798597 87798944 -109396488 + MTEa LTR MaLR 6 379 0 6 1254 871 182 161 0 chr1 87799161 87799353 -109396079 - URR1B DNA MER1_type -1 224 2 6 1254 838 164 27 20 chr1 87801146 87801295 -109394137 - B1_Mur4 SINE Alu 0 150 1 6 1254 244 179 232 0 chr1 87801487 87801543 -109393889 - MIR3 SINE MIR -31 177 109 6 1254 237 315 35 53 chr1 87803897 87804011 -109391421 - MIRm SINE MIR -141 135 21 6 1254 185 286 69 35 chr1 87805458 87805545 -109389887 - MIR SINE MIR -109 153 64 6 1254 845 189 0 0 chr1 87806782 87806930 -109388502 + B1F2 SINE Alu 1 148 -1 6 1254 468 299 98 0 chr1 87807021 87807195 -109388237 - B3A SINE B2 -6 192 2 6 1254 344 301 106 50 chr1 87807530 87807932 -109387500 - MLT1H2 LTR MaLR -74 415 19 6 1254 2562 120 50 15 chr1 87808030 87808429 -109387003 + MTC LTR MaLR 1 413 -8 6 1254 432 312 69 76 chr1 87808471 87808748 -109386684 - L1ME3B LINE L1 -184 6056 5782 6 1254 4971 44 8 0 chr1 87808861 87809447 -109385985 + L1Md_F2 LINE L1 5992 6582 0 6 1254 497 284 122 12 chr1 87809491 87809655 -109385777 - B3A SINE B2 -16 182 1 6 1254 333 341 27 32 chr1 87810030 87810215 -109385217 - L1ME3B LINE L1 -841 5305 5122 6 1254 518 331 103 30 chr1 87810333 87810420 -109385012 - B4A SINE B4 0 292 212 6 1254 192 77 0 0 chr1 87810420 87810446 -109384986 + (ATGGTG)n Simple_repeat Simple_repeat 4 29 0 6 1254 870 240 45 1 chr1 87810446 87810629 -109384803 - ID_B1 SINE B4 -81 211 2 6 1254 958 266 26 9 chr1 87810619 87810638 -109384794 - B4A SINE B4 -49 243 222 6 1254 270 0 0 0 chr1 87810638 87810668 -109384764 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1254 958 266 26 9 chr1 87810668 87810879 -109384553 - B4A SINE B4 -71 221 10 6 1254 984 223 0 25 chr1 87810908 87811110 -109384322 + B3A SINE B2 2 198 0 6 1254 913 209 111 123 chr1 87811129 87811527 -109383905 + RLTR9C LTR ERVK 1 393 0 6 1254 621 351 141 26 chr1 87811608 87812076 -109383356 - L1ME3B LINE L1 -1251 4895 4374 6 1254 895 111 41 6 chr1 87812141 87812313 -109383119 + CT-rich Low_complexity Low_complexity 1 178 0 6 1254 519 227 43 68 chr1 87812315 87812334 -109383098 - ID_B1 SINE B4 -46 246 167 6 1254 835 114 76 0 chr1 87812334 87812466 -109382966 - B1_Mur4 SINE Alu 0 150 9 6 1254 519 227 43 68 chr1 87812466 87812484 -109382948 - ID_B1 SINE B4 -46 166 80 6 1254 235 343 86 0 chr1 87812560 87812630 -109382802 - ID2 SINE ID -6 77 2 6 1254 242 333 28 28 chr1 87812896 87813072 -109382360 - L1ME3B LINE L1 -2346 3800 3625 6 1254 343 272 65 0 chr1 87814199 87814291 -109381141 + MIR3 SINE MIR 92 189 -19 6 1254 1254 54 0 0 chr1 87814599 87814746 -109380686 + B1_Mm SINE Alu 1 147 0 6 1254 216 184 0 0 chr1 87815400 87815438 -109379994 + CT-rich Low_complexity Low_complexity 1 38 0 6 1254 530 234 0 4 chr1 87815439 87815547 -109379885 - PB1D7 SINE Alu -41 106 3 6 1254 302 330 23 0 chr1 87815547 87815577 -109379855 - B4A SINE B4 -205 87 56 6 1254 231 36 0 0 chr1 87815659 87815687 -109379745 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1254 197 307 40 13 chr1 87815759 87815835 -109379597 + MIR SINE MIR 91 168 -94 6 1254 1610 228 83 23 chr1 87816564 87816824 -109378608 + MTD LTR MaLR 3 284 -135 6 1254 2073 159 15 33 chr1 87816824 87817214 -109378218 + ORR1C2 LTR MaLR 1 383 -1 6 1254 1610 228 83 23 chr1 87817214 87817340 -109378092 + MTD LTR MaLR 285 412 -7 6 1254 1258 28 7 0 chr1 87818081 87818226 -109377206 - B1_Mm SINE Alu 0 147 2 6 1255 1164 130 53 84 chr1 87821255 87821482 -109373950 - URR1B DNA MER1_type -4 221 2 6 1255 1031 254 115 48 chr1 87821483 87821797 -109373635 + MTEa LTR MaLR 38 372 -7 6 1255 586 304 24 45 chr1 87822127 87822315 -109373117 + ORR1E LTR MaLR 1 181 -189 6 1255 935 131 0 6 chr1 87822315 87822476 -109372956 + (TTC)n Simple_repeat Simple_repeat 2 161 0 6 1255 792 199 14 7 chr1 87822532 87822679 -109372753 - B1_Mur1 SINE Alu -1 148 1 6 1255 463 271 82 27 chr1 87823581 87823784 -109371648 + MER2 DNA MER2_type 2 225 -120 6 1255 558 261 7 78 chr1 87823788 87823942 -109371490 + RSINE1 SINE B4 18 160 -5 6 1255 528 16 0 0 chr1 87823945 87824006 -109371426 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1255 29 0 0 0 chr1 87824015 87824044 -109371388 + AT_rich Low_complexity Low_complexity 1 29 0 6 1255 600 317 68 28 chr1 87825243 87825508 -109369924 + ORR1E LTR MaLR 1 279 -95 6 1255 4038 141 174 36 chr1 87825515 87826347 -109369085 - RMER21A LTR ERV1 0 947 1 6 1255 284 306 93 36 chr1 87826347 87826437 -109368995 + ORR1E LTR MaLR 320 417 -2 6 1255 950 190 37 51 chr1 87826598 87826814 -109368618 + B3 SINE B2 2 214 -2 6 1255 364 260 123 19 chr1 87827027 87827133 -109368299 - PB1D7 SINE Alu -3 117 1 6 1255 769 234 6 12 chr1 87827168 87827328 -109368104 - ID_B1 SINE B4 0 224 66 6 1255 237 293 51 17 chr1 87827362 87827421 -109368011 - RSINE1 SINE B4 0 165 105 6 1255 333 0 0 0 chr1 87828630 87828667 -109366765 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1255 264 91 0 0 chr1 87828670 87828714 -109366718 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 6 1255 1895 302 81 31 chr1 87828716 87829424 -109366008 - MER21B LTR ERV1 -119 744 2 6 1255 612 0 0 0 chr1 87829669 87829737 -109365695 + (TCCCC)n Simple_repeat Simple_repeat 5 72 0 6 1255 461 287 48 172 chr1 87829754 87830108 -109365324 - LTR48B LTR ERV1 -7 637 328 6 1255 783 246 65 5 chr1 87832140 87832340 -109363092 - B3 SINE B2 0 216 5 6 1255 229 291 37 46 chr1 87832677 87832785 -109362647 + MLT1A LTR MaLR 225 331 -43 6 1255 297 0 0 0 chr1 87833315 87833348 -109362084 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1255 231 36 0 0 chr1 87833590 87833618 -109361814 + (CCA)n Simple_repeat Simple_repeat 3 30 0 6 1255 185 226 32 0 chr1 87836044 87836106 -109359326 + CT-rich Low_complexity Low_complexity 5 68 0 6 1255 207 0 0 0 chr1 87837192 87837215 -109358217 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1255 396 349 50 22 chr1 87838566 87838745 -109356687 + B4A SINE B4 1 184 -108 6 1255 693 36 0 0 chr1 87838745 87838829 -109356603 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1255 381 43 0 0 chr1 87838892 87838939 -109356493 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1255 245 354 0 12 chr1 87839210 87839290 -109356142 + ID4 SINE ID 1 79 -4 6 1255 210 255 20 0 chr1 87839291 87839342 -109356090 + GA-rich Low_complexity Low_complexity 5 56 0 6 1255 480 35 0 0 chr1 87839973 87840031 -109355401 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1255 465 19 0 0 chr1 87840031 87840084 -109355348 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1255 241 317 75 21 chr1 87840603 87840790 -109354642 - L1MC LINE L1 -1962 5920 5724 6 1255 420 194 16 156 chr1 87840951 87841073 -109354359 - B4A SINE B4 -1 291 187 6 1255 2025 178 49 72 chr1 87841407 87841837 -109353595 + MTC LTR MaLR 2 421 0 6 1255 812 254 116 14 chr1 87842088 87842304 -109353128 + B4A SINE B4 35 272 -20 6 1255 359 336 19 0 chr1 87842338 87842445 -109352987 + PB1 SINE Alu 1 109 -18 6 1255 1392 140 53 77 chr1 87842474 87842835 -109352597 + ORR1B2 LTR MaLR 1 365 -9 6 1255 961 178 19 65 chr1 87843016 87843232 -109352200 + ORR1B2 LTR MaLR 162 367 0 6 1255 849 96 0 0 chr1 87843322 87843447 -109351985 + (GA)n Simple_repeat Simple_repeat 2 126 0 6 1255 820 182 152 21 chr1 87843716 87843907 -109351525 + B3 SINE B2 1 216 0 6 1255 303 268 232 11 chr1 87844133 87844314 -109351118 - LTR16B1 LTR ERVL -21 459 239 6 1255 1209 62 0 0 chr1 87844353 87844499 -109350933 + B1_Mus2 SINE Alu 2 147 0 6 1255 2274 136 3 61 chr1 87844507 87844884 -109350548 + ORR1B2 LTR MaLR 13 367 0 6 1255 216 180 120 0 chr1 87845871 87845921 -109349511 + ID2 SINE ID 3 58 -25 6 1255 315 0 0 0 chr1 87846332 87846367 -109349065 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1255 324 83 0 0 chr1 87846550 87846598 -109348834 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1255 585 267 37 0 chr1 87846605 87846740 -109348692 - RSINE1 SINE B4 -23 142 3 7 1255 189 94 0 0 chr1 87846750 87846782 -109348650 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1255 450 123 96 13 chr1 87847156 87847243 -109348189 + B1_Mur1 SINE Alu 49 148 -1 7 1255 354 247 65 0 chr1 87847594 87847671 -109347761 + ID4_ SINE ID 1 82 -1 7 1255 318 263 202 65 chr1 87847792 87847973 -109347459 + L1M4 LINE L1 2897 3107 -3039 7 1255 582 207 60 60 chr1 87847973 87848122 -109347310 + B1F2 SINE Alu 1 149 0 7 1255 318 263 202 65 chr1 87848122 87848322 -109347110 + L1M4 LINE L1 3108 3330 -2816 7 1255 325 314 40 24 chr1 87849327 87849451 -109345981 + L1M4 LINE L1 3969 4094 -2052 7 1255 584 11 207 0 chr1 87849740 87849827 -109345605 + B1_Mm SINE Alu 43 147 0 7 1255 333 93 0 0 chr1 87850834 87850888 -109344544 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 7 1255 455 159 10 93 chr1 87850891 87850988 -109344444 - B1_Mur1 SINE Alu -5 144 56 7 1255 1163 107 6 0 chr1 87851026 87851204 -109344228 + (TTC)n Simple_repeat Simple_repeat 1 179 0 7 1255 292 299 90 30 chr1 87851209 87851309 -109344123 + PB1D7 SINE Alu 4 109 -11 7 1255 315 0 0 0 chr1 87851309 87851344 -109344088 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1255 1265 41 0 0 chr1 87851665 87851811 -109343621 + B1_Mus2 SINE Alu 2 147 0 7 1255 232 204 0 20 chr1 87851811 87851851 -109343581 + A-rich Low_complexity Low_complexity 12 51 0 7 1255 276 344 65 0 chr1 87852873 87852966 -109342466 + L3 LINE CR1 4311 4409 -80 7 1255 306 50 0 0 chr1 87852970 87853010 -109342422 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1255 510 223 0 104 chr1 87853017 87853142 -109342290 + B1F SINE Alu 16 127 -22 7 1255 246 81 0 0 chr1 87853395 87853432 -109342000 + (CAGG)n Simple_repeat Simple_repeat 3 39 0 7 1255 188 255 36 18 chr1 87856972 87857028 -109338404 + MIRm SINE MIR 96 152 -124 7 1255 833 0 10 0 chr1 87858024 87858121 -109337311 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 7 1255 855 177 13 13 chr1 87858121 87858260 -109337172 - B1_Mur3 SINE Alu -8 141 1 7 1255 454 265 109 118 chr1 87858599 87858929 -109336503 - ORR1E LTR MaLR -2 357 31 7 1255 222 306 40 86 chr1 87859328 87859503 -109335929 - MIR SINE MIR -68 194 28 7 1255 472 259 33 49 chr1 87859662 87859690 -109335742 + L1MA8 LINE L1 5653 5680 -611 7 1255 243 0 0 0 chr1 87859690 87859717 -109335715 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1255 387 0 0 0 chr1 87859717 87859759 -109335673 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1255 472 259 33 49 chr1 87859759 87859912 -109335520 + L1MA8 LINE L1 5681 5831 -460 7 1255 624 274 7 0 chr1 87859912 87860047 -109335385 + ID_B1 SINE B4 84 219 -5 7 1255 186 43 0 0 chr1 87860053 87860076 -109335356 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 7 1255 646 289 76 47 chr1 87860076 87860352 -109335080 + B4A SINE B4 5 288 -4 7 1255 1222 54 0 0 chr1 87860473 87860620 -109334812 + B1_Mus1 SINE Alu 1 147 -1 7 1255 241 18 125 0 chr1 87860627 87860683 -109334749 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 7 1255 336 250 121 0 chr1 87860690 87860830 -109334602 + L1MA8 LINE L1 5889 6045 -255 7 1255 219 36 0 0 chr1 87860837 87860865 -109334567 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1255 2158 140 57 3 chr1 87860877 87861229 -109334203 + ORR1C1 LTR MaLR 1 371 -7 7 1255 648 201 15 44 chr1 87861232 87861367 -109334065 - B1_Mur1 SINE Alu -14 135 5 7 1255 2023 154 24 75 chr1 87863526 87863941 -109331491 + ORR1B1 LTR MaLR 1 394 0 7 1255 9015 97 5 3 chr1 87863948 87864528 -109330904 + Lx4A LINE L1 5485 6069 -989 7 1255 369 0 0 0 chr1 87864528 87864569 -109330863 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1255 9015 130 15 3 chr1 87864569 87865539 -109329893 + Lx4A LINE L1 6070 7058 0 7 1255 1727 161 3 111 chr1 87865745 87866114 -109329318 + ORR1A4 LTR MaLR 1 329 0 7 1255 291 335 0 23 chr1 87866623 87866794 -109328638 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 7 1255 333 322 0 0 chr1 87866718 87866836 -109328596 + (CA)n Simple_repeat Simple_repeat 1 118 0 7 1255 249 297 51 51 chr1 87867841 87867919 -109327513 + BC1_Mm scRNA scRNA 12 89 -63 7 1255 361 242 224 40 chr1 87868385 87868510 -109326922 + RSINE1 SINE B4 2 149 -16 7 1255 461 215 215 0 chr1 87868540 87868647 -109326785 - B1_Mus1 SINE Alu -16 132 3 7 1255 261 312 0 0 chr1 87868678 87868742 -109326690 + ID2 SINE ID 1 64 -19 7 1255 1223 175 39 26 chr1 87868882 87869116 -109326316 - MTC LTR MaLR 0 421 185 7 1255 1164 129 58 24 chr1 87869252 87869458 -109325974 - MTC LTR MaLR -194 213 1 7 1255 216 0 0 0 chr1 87870270 87870294 -109325138 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1255 644 271 27 15 chr1 87870343 87870541 -109324891 + B3 SINE B2 6 205 -11 7 1255 670 298 77 5 chr1 87870574 87870783 -109324649 + ID_B1 SINE B4 1 224 0 7 1255 407 260 219 32 chr1 87871317 87871393 -109324039 + B4A SINE B4 2 110 -182 7 1255 414 0 0 0 chr1 87871393 87871439 -109323993 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1255 407 260 219 32 chr1 87871439 87871517 -109323915 + B4A SINE B4 111 184 -108 7 1255 279 284 63 0 chr1 87871543 87871638 -109323794 + B3 SINE B2 100 200 -16 7 1255 527 306 21 0 chr1 87871895 87872039 -109323393 + MTEa LTR MaLR 58 204 -175 7 1255 998 103 13 8 chr1 87872049 87872283 -109323149 + (GGGGA)n Simple_repeat Simple_repeat 1 235 0 7 1255 403 218 0 13 chr1 87872284 87872363 -109323069 + B4 SINE B4 1 78 -214 7 1255 608 254 8 31 chr1 87872373 87872503 -109322929 - ID_B1 SINE B4 -14 210 84 7 1255 418 239 13 0 chr1 87872503 87872622 -109322810 - L1MA8 LINE L1 -459 5832 5677 7 1255 566 236 60 30 chr1 87872622 87872656 -109322776 + MTEa LTR MaLR 209 242 -137 7 1255 372 22 0 0 chr1 87872656 87872701 -109322731 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1255 387 0 0 0 chr1 87872701 87872743 -109322689 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1255 566 236 60 30 chr1 87872743 87872873 -109322559 + MTEa LTR MaLR 243 378 -1 7 1255 660 221 30 0 chr1 87873509 87873640 -109321792 + B4A SINE B4 1 135 -157 7 1255 369 0 0 0 chr1 87874054 87874095 -109321337 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7 1255 236 214 82 12 chr1 87874514 87874599 -109320833 + L2b LINE L2 3086 3176 -199 7 1255 240 119 51 0 chr1 87875491 87875550 -109319882 + GA-rich Low_complexity Low_complexity 2 63 0 7 1255 226 211 0 0 chr1 87875550 87875588 -109319844 + polypurine Low_complexity Low_complexity 4 41 0 7 1255 423 0 0 0 chr1 87876889 87876936 -109318496 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1255 1283 91 11 0 chr1 87877087 87877262 -109318170 + B2_Mm1t SINE B2 3 179 -14 7 1255 413 91 0 0 chr1 87877275 87877330 -109318102 + B2_Mm2 SINE B2 47 101 -94 7 1255 198 0 0 0 chr1 87877337 87877359 -109318073 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1255 304 287 10 31 chr1 87877370 87877467 -109317965 + PB1D10 SINE Alu 23 117 0 7 1255 348 24 0 0 chr1 87877521 87877562 -109317870 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 7 1255 301 346 47 33 chr1 87877598 87877873 -109317559 + L1MA7 LINE L1 5988 6266 -25 7 1255 811 93 0 0 chr1 87878258 87878366 -109317066 - B1_Mus2 SINE Alu 0 147 40 7 1255 317 221 29 29 chr1 87878314 87878384 -109317048 - 4.5SRNA scRNA scRNA -6 88 19 7 1255 459 282 115 21 chr1 87878704 87878896 -109316536 + Tigger8 DNA MER2_type 344 553 -113 7 1255 395 255 48 19 chr1 87879527 87879631 -109315801 + PB1D10 SINE Alu 3 109 -8 7 1255 700 251 43 12 chr1 87880052 87880213 -109315219 + Charlie1 DNA MER1_type 7 172 -2609 7 1255 223 174 0 0 chr1 87880276 87880322 -109315110 + A-rich Low_complexity Low_complexity 1 46 0 7 1255 884 213 70 15 chr1 87880333 87880533 -109314899 + B3 SINE B2 1 211 -5 7 1255 333 314 36 60 chr1 87880540 87880706 -109314726 + Charlie1 DNA MER1_type 2620 2781 0 7 1255 815 262 28 23 chr1 87881576 87881791 -109313641 + B4A SINE B4 7 222 -70 7 1255 2507 135 14 19 chr1 87883001 87883424 -109312008 + MTC LTR MaLR 1 421 0 7 1255 1284 20 7 0 chr1 87883594 87883740 -109311692 - B1_Mus1 SINE Alu 0 148 2 7 1255 378 0 0 0 chr1 87883780 87883822 -109311610 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1255 180 0 0 0 chr1 87883873 87883893 -109311539 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1255 328 378 8 23 chr1 87883976 87884106 -109311326 + MIR SINE MIR 125 252 -10 7 1255 235 217 80 80 chr1 87884151 87884226 -109311206 + MTE2a LTR MaLR 76 150 -229 7 1255 391 219 38 75 chr1 87884160 87884293 -109311139 + MT2A LTR ERVL 85 212 -321 7 1255 277 94 55 36 chr1 87884279 87884334 -109311098 - B1_Mus2 SINE Alu -91 56 1 7 1255 269 196 0 0 chr1 87884292 87884343 -109311089 - B4 SINE B4 -165 127 77 7 1255 226 282 33 56 chr1 87884343 87884375 -109311057 - MT2B2 LTR ERVL -369 201 128 7 1255 514 239 52 11 chr1 87884604 87884740 -109310692 - B1F SINE Alu 0 149 3 7 1255 288 0 0 0 chr1 87885647 87885679 -109309753 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1255 387 268 12 0 chr1 87885747 87885829 -109309603 - RSINE1 SINE B4 -15 150 68 7 1255 692 142 103 66 chr1 87885881 87885896 -109309536 - B1_Mur2 SINE Alu 0 149 140 7 1255 204 40 0 0 chr1 87885896 87885921 -109309511 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1255 692 142 103 66 chr1 87885921 87886041 -109309391 - B1_Mur2 SINE Alu -10 139 9 7 1255 287 273 59 29 chr1 87886291 87886393 -109309039 - MIR SINE MIR -36 226 122 7 1255 264 19 246 53 chr1 87886393 87886450 -109308982 + L1Md_F2 LINE L1 6503 6570 -12 7 1255 21 57 0 0 chr1 87886530 87886565 -109308867 + AT_rich Low_complexity Low_complexity 1 35 0 7 1255 225 182 23 0 chr1 87886649 87886693 -109308739 + RSINE1 SINE B4 68 112 -53 7 1255 23 0 0 0 chr1 87886715 87886738 -109308694 + AT_rich Low_complexity Low_complexity 1 23 0 7 1255 214 250 62 0 chr1 87886741 87886789 -109308643 - MIR SINE MIR -131 131 81 7 1255 248 232 129 14 chr1 87887469 87887539 -109307893 + PB1D10 SINE Alu 40 117 0 8 1255 351 0 0 0 chr1 87887710 87887749 -109307683 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1255 351 274 92 111 chr1 87888035 87888449 -109306983 + L1MCb LINE L1 244 649 -5396 8 1255 267 269 30 0 chr1 87888499 87888566 -109306866 - MLT1A LTR MaLR -44 330 262 8 1255 545 281 54 103 chr1 87888650 87888685 -109306747 - MER34 LTR ERV1 -3 539 512 8 1255 641 290 92 107 chr1 87888685 87889067 -109306365 + MTE2b LTR MaLR 4 379 0 8 1255 545 281 54 103 chr1 87889067 87889137 -109306295 - MER34 LTR ERV1 -31 511 430 8 1255 960 150 7 0 chr1 87889137 87889284 -109306148 + B1_Mus1 SINE Alu 1 148 0 8 1255 207 69 0 0 chr1 87889289 87889318 -109306114 + (CAA)n Simple_repeat Simple_repeat 1 29 0 8 1255 545 281 54 103 chr1 87889318 87889350 -109306082 - MER34 LTR ERV1 -118 424 396 8 1255 575 283 102 99 chr1 87889350 87889602 -109305830 - MLT1A1 LTR MaLR 0 408 157 8 1255 1157 72 0 0 chr1 87889602 87889741 -109305691 - B1_Mus2 SINE Alu -7 140 2 8 1255 575 283 102 99 chr1 87889741 87889892 -109305540 - MLT1A1 LTR MaLR -252 156 4 8 1255 545 281 54 103 chr1 87889892 87889988 -109305444 - MER34 LTR ERV1 -147 395 312 8 1255 760 254 144 53 chr1 87890000 87890361 -109305071 - RMER10A LTR ERVL -25 417 24 8 1255 1440 228 56 0 chr1 87890415 87890735 -109304697 + Lx6 LINE L1 7097 7434 -26 8 1255 1368 42 79 0 chr1 87890755 87890944 -109304488 + L1Md_F3 LINE L1 6381 6584 0 8 1255 918 278 20 53 chr1 87890944 87891241 -109304191 - MER34 LTR ERV1 -253 289 1 8 1255 867 321 5 0 chr1 87891288 87891497 -109303935 + ID_B1 SINE B4 1 210 -14 8 1255 669 131 0 0 chr1 87892001 87892108 -109303324 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 8 1255 2120 121 16 155 chr1 87892254 87892639 -109302793 + ORR1C1 LTR MaLR 1 339 -39 8 1255 1271 35 0 0 chr1 87892639 87892784 -109302648 + B1_Mm SINE Alu 3 147 0 8 1255 2120 121 16 155 chr1 87892784 87892837 -109302595 + ORR1C1 LTR MaLR 340 378 0 8 1255 1370 92 16 0 chr1 87892852 87893037 -109302395 - B2_Mm2 SINE B2 -6 189 2 8 1255 724 259 0 7 chr1 87893290 87893438 -109301994 + RSINE1 SINE B4 3 149 -16 8 1255 269 229 155 10 chr1 87893618 87893715 -109301717 + MTEb LTR MaLR 269 379 0 8 1255 307 307 42 42 chr1 87893826 87893969 -109301463 - HAL1-3A_ME LINE L1 -423 2435 2293 8 1255 198 271 15 15 chr1 87894007 87894142 -109301290 + C-rich Low_complexity Low_complexity 3 137 0 8 1255 3255 51 20 0 chr1 87894177 87894569 -109300863 - MTB LTR MaLR 0 400 1 8 1255 352 135 27 0 chr1 87895268 87895342 -109300090 + GA-rich Low_complexity Low_complexity 3 78 0 8 1255 223 291 38 0 chr1 87895342 87895421 -109300011 + PB1D9 SINE Alu 31 112 -8 8 1255 339 285 181 0 chr1 87895826 87896050 -109299382 + L1MB5 LINE L1 5908 6172 -2 8 1255 1168 176 28 9 chr1 87896088 87896300 -109299132 - B3 SINE B2 0 216 1 8 1255 312 312 54 18 chr1 87896339 87896450 -109298982 - PB1D7 SINE Alu -3 117 3 8 1255 570 143 0 0 chr1 87897006 87897111 -109298321 + (CA)n Simple_repeat Simple_repeat 1 105 0 8 1255 383 312 75 5 chr1 87897490 87897690 -109297742 + L1MC4 LINE L1 6702 6915 -1127 8 1255 267 194 59 15 chr1 87897701 87897769 -109297663 - B3 SINE B2 -145 71 1 8 1255 742 261 6 0 chr1 87897886 87898051 -109297381 - B3 SINE B2 -50 166 1 8 1255 1072 102 0 33 chr1 87898540 87898692 -109296740 - B1_Mus1 SINE Alu -1 147 1 8 1255 351 342 67 7 chr1 87899425 87899575 -109295857 + RSINE1 SINE B4 1 159 -6 8 1255 342 67 0 0 chr1 87899603 87899648 -109295784 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 8 1255 314 304 79 8 chr1 87899851 87899977 -109295455 + ORR1E LTR MaLR 3 137 -222 8 1255 198 0 0 0 chr1 87900073 87900095 -109295337 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1255 996 110 0 0 chr1 87900098 87900234 -109295198 - B1_Mus1 SINE Alu -12 136 1 8 1255 1137 92 24 6 chr1 87900457 87900622 -109294810 + ORR1A2 LTR MaLR 1 168 -159 8 1255 3128 77 0 0 chr1 87900623 87901026 -109294406 + L1Md_T LINE L1 6180 6582 0 8 1255 301 290 29 0 chr1 87901026 87901095 -109294337 + L1MEg LINE L1 1882 1952 -4132 8 1255 1349 58 6 6 chr1 87901096 87901269 -109294163 + ORR1A2 LTR MaLR 155 327 0 8 1255 378 0 0 0 chr1 87901327 87901369 -109294063 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1255 604 213 84 84 chr1 87901607 87901786 -109293646 - B2_Mm2 SINE B2 0 195 17 8 1255 600 284 154 59 chr1 87902328 87902705 -109292727 - MLT1C LTR MaLR -13 454 31 8 1255 1390 98 0 10 chr1 87905554 87905749 -109289683 + B2_Mm2 SINE B2 1 193 -2 8 1255 240 256 76 22 chr1 87905847 87905939 -109289493 + MIRb SINE MIR 17 113 -155 8 1255 363 275 286 34 chr1 87906015 87906309 -109289123 - MLT1D LTR MaLR -137 368 1 8 1255 812 272 190 18 chr1 87906406 87906732 -109288700 - MLT1F LTR MaLR -15 533 152 8 1255 23 68 0 0 chr1 87906733 87906777 -109288655 + AT_rich Low_complexity Low_complexity 1 44 0 8 1255 816 270 40 0 chr1 87906826 87907000 -109288432 + B3 SINE B2 1 181 -35 8 1255 2087 110 256 6 chr1 87908073 87908429 -109287003 - RLTR44B LTR ERVK -4 445 1 8 1255 4932 37 2 2 chr1 87908429 87909028 -109286404 - RLTR44-int LTR ERVK 0 2812 2214 8 1255 4869 43 7 7 chr1 87909325 87909938 -109285494 - RLTR44-int LTR ERVK -1323 1489 877 8 1255 21 0 0 0 chr1 87909956 87909977 -109285455 + AT_rich Low_complexity Low_complexity 1 21 0 8 1255 659 280 97 0 chr1 87910011 87910218 -109285214 + Lx8 LINE L1 6994 7220 -253 8 1255 239 330 14 66 chr1 87910362 87910453 -109284979 - 7SLRNA srpRNA srpRNA -59 89 2 8 1255 1275 41 0 0 chr1 87910592 87910739 -109284693 - B1_Mm SINE Alu 0 147 1 8 1255 376 387 9 9 chr1 87911092 87911247 -109284185 - MurSatRep1 Unknown Unknown -88 2049 1967 8 1255 382 314 0 0 chr1 87911247 87911474 -109283958 - MMSAT4 Satellite Satellite 0 227 1 8 1255 376 387 9 9 chr1 87911474 87911881 -109283551 - MurSatRep1 Unknown Unknown -88 1966 1747 8 1255 257 344 35 35 chr1 87911909 87912111 -109283321 - MurSatRep1 Unknown Unknown -84 2053 1852 8 1255 564 208 8 8 chr1 87912331 87912457 -109282975 - MurSatRep1 Unknown Unknown -1395 742 617 8 1255 430 86 84 24 chr1 87912620 87912703 -109282729 - RLTR44-int LTR ERVK -1867 945 858 8 1255 709 170 50 0 chr1 87912696 87912837 -109282595 - RLTR44-int LTR ERVK -2664 148 1 8 1255 2242 108 179 5 chr1 87912839 87913220 -109282212 - RLTR44B LTR ERVK -2 447 1 8 1255 23 0 0 0 chr1 87913858 87913881 -109281551 + AT_rich Low_complexity Low_complexity 1 23 0 8 1255 1000 134 7 7 chr1 87913920 87914070 -109281362 - B1_Mur4 SINE Alu 0 150 1 8 1255 989 67 90 0 chr1 87914257 87914391 -109281041 + B1_Mus1 SINE Alu 1 146 -2 8 1255 210 162 0 0 chr1 87914393 87914430 -109281002 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 8 1255 243 0 0 0 chr1 87915626 87915653 -109279779 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1255 198 282 141 0 chr1 87915814 87915885 -109279547 - MIRb SINE MIR -26 242 162 8 1255 568 276 91 62 chr1 87916895 87917104 -109278328 + MER20 DNA MER1_type 1 215 -4 8 1255 251 114 23 0 chr1 87917539 87917583 -109277849 + (TAA)n Simple_repeat Simple_repeat 3 47 0 8 1255 1142 79 0 0 chr1 87919086 87919226 -109276206 - B1_Mus2 SINE Alu -6 141 2 8 1255 277 252 84 37 chr1 87919615 87919722 -109275710 - MER53 DNA hAT -1 192 81 8 1255 268 262 80 80 chr1 87920562 87920674 -109274758 - MTEb LTR MaLR 0 379 268 8 1255 366 23 0 0 chr1 87921882 87921925 -109273507 + (TAA)n Simple_repeat Simple_repeat 2 44 0 8 1255 232 310 78 20 chr1 87922668 87922770 -109272662 + MIRb SINE MIR 131 238 -30 8 1255 493 349 128 54 chr1 87923560 87923966 -109271466 - LTR16A1 LTR ERVL -17 439 4 8 1255 183 222 0 0 chr1 87925390 87925435 -109269997 + GA-rich Low_complexity Low_complexity 3 47 0 8 1255 1066 102 6 6 chr1 87925435 87925603 -109269829 + (GGAA)n Simple_repeat Simple_repeat 4 171 0 8 1255 754 188 0 0 chr1 87925871 87925988 -109269444 - PB1D10 SINE Alu 0 117 1 8 1255 465 275 103 16 chr1 87926151 87926336 -109269096 + MER34A1 LTR ERV1 4 204 -367 8 1255 523 271 62 7 chr1 87926469 87926614 -109268818 + MER34A1 LTR ERV1 429 581 -6 8 1255 622 188 7 104 chr1 87926642 87926792 -109268640 + MLT1A0 LTR MaLR 24 158 -207 8 1255 1111 228 14 0 chr1 87926792 87927003 -109268429 + ID_B1 SINE B4 1 214 -10 8 1255 236 360 8 39 chr1 87926890 87927020 -109268412 - YREP_Mm Unknown Unknown -1516 296 171 8 1255 751 286 154 18 chr1 87927019 87927495 -109267937 - MER21B LTR ERV1 -11 852 273 8 1255 326 225 23 81 chr1 87927983 87928070 -109267362 - RLTR20A LTR ERVK -459 82 1 8 1255 1272 96 80 20 chr1 87928070 87928271 -109267161 - MTC LTR MaLR -207 214 2 8 1255 189 0 0 0 chr1 87929893 87929914 -109265518 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1255 560 244 63 0 chr1 87929916 87930043 -109265389 - B1F2 SINE Alu -14 135 1 8 1255 606 185 18 27 chr1 87930043 87930153 -109265279 - PB1D10 SINE Alu -5 112 3 8 1255 259 318 23 0 chr1 87930298 87930386 -109265046 - MLT1H2 LTR MaLR -31 564 475 8 1255 357 257 133 40 chr1 87930581 87930608 -109264824 + ID_B1 SINE B4 61 224 0 8 1255 549 190 179 16 chr1 87930608 87930731 -109264701 + B1_Mur1 SINE Alu 6 148 -1 8 1255 492 222 92 61 chr1 87930985 87931148 -109264284 - LTR48 LTR ERV1 -619 168 1 8 1255 369 75 0 0 chr1 87931699 87931752 -109263680 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1255 393 22 0 0 chr1 87931752 87931798 -109263634 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1255 7588 29 3 0 chr1 87932010 87932931 -109262501 - L1Md_F2 LINE L1 -12 6570 5673 8 1255 510 125 0 0 chr1 87933197 87933277 -109262155 + (CAAAA)n Simple_repeat Simple_repeat 2 81 0 8 1255 449 246 42 28 chr1 87933317 87933459 -109261973 - RMER10A LTR ERVL -8 434 291 8 1255 264 59 0 0 chr1 87933489 87933523 -109261909 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 8 1255 402 285 83 31 chr1 87933585 87933777 -109261655 - MLT1H2 LTR MaLR -211 278 77 8 1255 914 246 29 80 chr1 87934181 87934494 -109260938 + Lx5 LINE L1 6713 7009 -41 8 1255 905 149 0 39 chr1 87934522 87934676 -109260756 - B1_Mur4 SINE Alu -1 149 2 8 1255 441 0 0 0 chr1 87934859 87934908 -109260524 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1255 894 230 33 14 chr1 87935697 87935724 -109259708 - B3 SINE B2 0 216 188 9 1255 189 0 0 0 chr1 87935724 87935745 -109259687 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1255 894 230 33 14 chr1 87935745 87935929 -109259503 - B3 SINE B2 -29 187 1 9 1255 741 130 87 0 chr1 87936340 87936455 -109258977 + B1_Mur4 SINE Alu 14 138 -12 9 1255 531 0 0 0 chr1 87936565 87936624 -109258808 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 9 1255 300 53 0 0 chr1 87937042 87937080 -109258352 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 9 1255 1157 72 0 0 chr1 87937293 87937431 -109258001 + B1_Mus1 SINE Alu 1 138 -10 9 1255 243 0 0 0 chr1 87937441 87937468 -109257964 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1255 1716 263 71 11 chr1 87937531 87937996 -109257436 - MTEb-int LTR MaLR -441 1139 647 9 1255 683 184 51 45 chr1 87937991 87938167 -109257265 - B2_Mm2 SINE B2 -3 192 16 9 1255 2492 276 53 5 chr1 87938174 87938799 -109256633 - MTEb-int LTR MaLR -921 659 5 9 1255 1333 221 61 79 chr1 87938804 87939063 -109256369 - MTEb LTR MaLR -2 377 135 9 1255 365 58 19 0 chr1 87939063 87939115 -109256317 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1255 1333 221 61 79 chr1 87939115 87939234 -109256198 - MTEb LTR MaLR -245 134 7 9 1255 245 242 56 83 chr1 87940182 87940290 -109255142 + L2a LINE L2 3221 3325 -101 9 1255 183 305 105 0 chr1 87940562 87940657 -109254775 + L2c LINE L2 3280 3384 -3 9 1255 405 251 164 12 chr1 87940828 87940993 -109254439 - MER3 DNA MER1_type -19 190 1 9 1255 780 192 27 0 chr1 87941120 87941266 -109254166 - URR1B DNA MER1_type 0 225 76 9 1255 1118 226 93 117 chr1 87941446 87941831 -109253601 + MTE2a LTR MaLR 2 377 -2 9 1255 657 253 23 8 chr1 87942071 87942254 -109253178 + B3 SINE B2 8 198 0 9 1255 524 133 37 37 chr1 87944565 87944674 -109250758 + PB1D9 SINE Alu 12 120 0 9 1255 486 275 0 9 chr1 87944724 87944834 -109250598 + PB1D10 SINE Alu 1 109 -8 9 1255 1475 68 16 5 chr1 87946088 87946281 -109249151 + B2_Mm2 SINE B2 1 195 0 9 1255 1360 100 11 0 chr1 87946296 87946486 -109248946 + B2_Mm1t SINE B2 1 192 -1 9 1255 1223 34 0 13 chr1 87946486 87946634 -109248798 + B1_Mm SINE Alu 1 147 0 9 1255 195 42 0 0 chr1 87946634 87946658 -109248774 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1255 615 280 25 0 chr1 87946667 87946824 -109248608 + RSINE1 SINE B4 4 164 -1 9 1255 277 301 11 0 chr1 87946825 87946918 -109248514 + (CA)n Simple_repeat Simple_repeat 1 94 0 9 1255 388 226 21 0 chr1 87946936 87947029 -109248403 - MER2 DNA MER2_type -104 241 147 9 1255 351 0 0 0 chr1 87947031 87947070 -109248362 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 1255 1028 118 253 0 chr1 87947093 87947263 -109248169 - B3 SINE B2 -3 213 1 9 1255 1009 198 24 24 chr1 87947270 87947482 -109247950 - B3 SINE B2 0 216 5 9 1255 374 246 126 7 chr1 87947488 87947623 -109247809 - MER2 DNA MER2_type -194 151 1 9 1255 1096 82 0 7 chr1 87947782 87947930 -109247502 + B1_Mus2 SINE Alu 1 147 0 9 1255 361 308 39 98 chr1 87947937 87948142 -109247290 - L1MD2 LINE L1 -27 6332 6140 9 1255 824 243 77 5 chr1 87948253 87948460 -109246972 - ID_B1 SINE B4 -2 222 1 9 1255 518 177 52 26 chr1 87948477 87948529 -109246903 - PB1D9 SINE Alu 0 120 64 9 1255 357 24 0 0 chr1 87948529 87948571 -109246861 + (TC)n Simple_repeat Simple_repeat 2 43 0 9 1255 518 177 52 26 chr1 87948571 87948634 -109246798 - PB1D9 SINE Alu -57 63 2 9 1255 387 0 0 0 chr1 87948645 87948688 -109246744 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 1255 1100 62 7 58 chr1 87948693 87948848 -109246584 - B1_Mus2 SINE Alu 0 147 1 9 1255 258 325 75 47 chr1 87948934 87949147 -109246285 - MLT1L LTR MaLR -3 607 389 9 1255 271 164 53 35 chr1 87949159 87949216 -109246216 - L1MC LINE L1 -2221 5661 5604 9 156 689 248 0 0 chr1 87949287 87949428 -109246004 - RSINE1 SINE B4 -24 141 1 9 1256 939 212 64 0 chr1 87951042 87951245 -109244187 + ID_B1 SINE B4 9 224 0 9 1256 499 295 8 30 chr1 87952252 87952385 -109243047 - RSINE1 SINE B4 -22 143 14 9 1256 571 158 0 0 chr1 87952795 87952896 -109242536 + B1_Mus1 SINE Alu 1 101 -47 9 1256 334 240 0 37 chr1 87953786 87953894 -109241538 - Charlie5 DNA MER1_type -6 2618 2515 9 1256 660 204 13 58 chr1 87953900 87954056 -109241376 - B1_Mur1 SINE Alu 0 149 1 9 1256 880 202 49 29 chr1 87954076 87954280 -109241152 - B3 SINE B2 -6 210 3 9 1256 446 264 11 44 chr1 87954308 87954519 -109240913 - B4A SINE B4 -43 249 1 9 1256 372 283 0 0 chr1 87954519 87954609 -109240823 - ID_B1 SINE B4 -133 91 2 9 1256 581 190 43 8 chr1 87954683 87954800 -109240632 - B1F SINE Alu -20 129 9 9 1256 305 274 21 10 chr1 87954871 87954967 -109240465 + RSINE1 SINE B4 1 97 -68 9 1256 838 221 126 21 chr1 87954969 87955159 -109240273 + B3 SINE B2 1 210 -6 9 1256 289 220 17 0 chr1 87955188 87955247 -109240185 + RSINE1 SINE B4 86 145 -20 9 1256 345 240 87 0 chr1 87955243 87955347 -109240085 - Charlie5 DNA MER1_type -271 2353 2241 9 1256 211 189 0 0 chr1 87955519 87955556 -109239876 + ID4 SINE ID 13 49 -34 9 1256 216 0 0 0 chr1 87955901 87955925 -109239507 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1256 344 210 0 0 chr1 87956569 87956631 -109238801 - ID4_ SINE ID -10 73 12 9 1256 308 273 170 63 chr1 87956786 87957169 -109238263 - RMER10A LTR ERVL -18 424 1 9 1256 431 152 38 12 chr1 87957416 87957496 -109237936 - ID4 SINE ID -1 82 1 9 1256 2578 114 46 148 chr1 87957627 87958216 -109237216 - RLTR24 LTR ERV1 0 529 1 9 1256 726 240 90 27 chr1 87958764 87958952 -109236480 + B3 SINE B2 3 202 -14 9 1256 785 147 130 40 chr1 87959165 87959342 -109236090 - B2_Mm2 SINE B2 -1 194 2 9 1256 659 143 27 0 chr1 87959346 87959458 -109235974 - B1_Mur2 SINE Alu 0 149 35 9 1256 552 284 44 30 chr1 87959545 87959748 -109235684 + ID_B1 SINE B4 1 206 -18 9 1256 785 218 80 28 chr1 87959839 87960034 -109235398 - B3A SINE B2 -3 192 7 9 1256 507 238 119 0 chr1 87960054 87960180 -109235252 - B1_Mur2 SINE Alu -7 142 2 9 1256 276 286 58 97 chr1 87960180 87960209 -109235223 - B4 SINE B4 -73 219 71 9 1256 228 182 0 0 chr1 87960284 87960328 -109235104 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 9 1256 764 195 109 145 chr1 87960334 87960405 -109235027 - B4A SINE B4 -23 269 229 9 1256 703 177 15 44 chr1 87960405 87960541 -109234891 - B1_Mur2 SINE Alu -16 133 2 9 1256 764 195 109 145 chr1 87960541 87960745 -109234687 - B4A SINE B4 -64 228 4 9 1256 294 145 26 0 chr1 87960771 87960833 -109234599 - PB1D10 SINE Alu -9 111 44 9 1256 269 219 0 45 chr1 87960788 87960855 -109234577 - 4.5SRNA scRNA scRNA -8 86 23 9 1256 697 205 8 38 chr1 87962221 87962353 -109233079 - B1_Mur2 SINE Alu -17 132 5 9 1256 259 300 17 0 chr1 87963637 87963757 -109231675 - HAL1 LINE L1 -122 2385 2264 9 1256 1165 172 19 14 chr1 87963782 87963994 -109231438 - B3 SINE B2 0 216 4 9 1256 957 211 19 29 chr1 87964039 87964244 -109231188 + B3 SINE B2 9 211 -5 9 1256 22 0 0 0 chr1 87964698 87964720 -109230712 + AT_rich Low_complexity Low_complexity 1 22 0 9 1256 1050 99 14 0 chr1 87964721 87964863 -109230569 - B1_Mus1 SINE Alu -2 146 3 9 1256 473 294 77 0 chr1 87965274 87965417 -109230015 + RSINE1 SINE B4 4 157 -8 9 1256 23 0 0 0 chr1 87965425 87965448 -109229984 + AT_rich Low_complexity Low_complexity 1 23 0 9 1256 279 313 48 0 chr1 87965547 87965630 -109229802 - PB1D7 SINE Alu -32 88 2 9 1256 397 317 8 0 chr1 87965761 87965881 -109229551 - MER5A DNA MER1_type -63 126 6 9 1256 1006 54 0 0 chr1 87966012 87966142 -109229290 - B1_Mm SINE Alu -9 138 9 9 1256 702 232 28 0 chr1 87966144 87966286 -109229146 + RSINE1 SINE B4 3 148 -17 9 1256 304 176 142 50 chr1 87966417 87966537 -109228895 - B4A SINE B4 -44 248 118 9 1256 602 225 180 16 chr1 87966700 87966894 -109228538 - B4A SINE B4 -13 279 54 9 1256 395 212 94 7 chr1 87966941 87967079 -109228353 - B4A SINE B4 -142 150 1 9 1256 694 248 38 0 chr1 87967493 87967650 -109227782 + RSINE1 SINE B4 3 165 0 9 1256 23 0 0 0 chr1 87967911 87967934 -109227498 + AT_rich Low_complexity Low_complexity 1 23 0 9 1256 198 0 0 0 chr1 87967964 87967986 -109227446 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 9 1256 667 172 37 0 chr1 87967986 87968120 -109227312 - B1_Mur2 SINE Alu -10 139 1 9 1256 250 290 0 42 chr1 87968841 87968913 -109226519 - PB1D10 SINE Alu -37 80 12 9 1256 458 238 50 78 chr1 87969139 87969306 -109226126 - ID_B1 SINE B4 -2 222 64 9 1256 264 113 45 0 chr1 87969364 87969424 -109226008 - B1_Mur4 SINE Alu -3 147 55 9 1256 3593 23 0 0 chr1 87970060 87970456 -109224976 - MTA_Mm LTR MaLR 0 396 1 9 1256 7554 71 28 72 chr1 87970456 87971605 -109223827 - MTA_Mm-int LTR MaLR 0 1098 1 9 1256 1068 75 142 3 chr1 87971611 87971851 -109223581 - MTA_Mm LTR MaLR -8 338 1 9 1256 764 177 48 28 chr1 87972659 87972804 -109222628 - B1_Mur4 SINE Alu 0 150 3 9 1256 383 315 46 9 chr1 87972966 87973075 -109222357 - RSINE1 SINE B4 0 165 53 9 1256 1288 233 15 4 chr1 87973106 87973373 -109222059 - Lx8 LINE L1 -132 7341 7072 9 1256 210 150 0 0 chr1 87973478 87973518 -109221914 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1256 601 161 268 0 chr1 87973531 87973643 -109221789 + B1_Mus1 SINE Alu 1 142 -6 9 1256 1199 68 0 0 chr1 87973660 87973806 -109221626 + B1_Mm SINE Alu 2 147 0 9 1256 650 100 10 0 chr1 87974630 87974730 -109220702 + B1_Mus2 SINE Alu 47 147 0 9 1256 195 129 0 0 chr1 87974730 87974761 -109220671 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1256 702 182 0 89 chr1 87974770 87974927 -109220505 + B1_Mur1 SINE Alu 2 144 -5 9 1256 1167 239 59 59 chr1 87976067 87976472 -109218960 + MTD LTR MaLR 1 405 -14 1 1256 516 248 27 14 chr1 87976483 87976630 -109218802 + MTD-int LTR MaLR 1 149 -1109 1 1256 226 281 0 17 chr1 87976745 87976803 -109218629 - ID4_ SINE ID -26 57 1 1 1256 233 330 8 56 chr1 87976864 87976989 -109218443 - L1M5 LINE L1 -1531 4615 4497 1 1256 320 258 131 25 chr1 87977024 87977207 -109218225 - L1M5 LINE L1 -1898 4248 4048 1 1256 388 307 35 17 chr1 87977439 87977555 -109217877 - ID_B1 SINE B4 -104 120 3 1 1256 206 118 0 0 chr1 87977565 87977599 -109217833 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1256 1390 54 54 5 chr1 87977599 87977784 -109217648 - B2_Mm2 SINE B2 0 195 2 1 1256 742 207 22 0 chr1 87977838 87977973 -109217459 - B1_Mur1 SINE Alu -8 141 4 1 1256 344 179 0 13 chr1 87978711 87978790 -109216642 + CT-rich Low_complexity Low_complexity 2 79 0 1 1256 312 229 237 44 chr1 87978809 87978923 -109216509 - B1_Mur2 SINE Alu -12 137 2 1 1256 744 229 23 6 chr1 87979032 87979203 -109216229 + B3 SINE B2 42 215 -1 1 1256 526 333 43 0 chr1 87979212 87979398 -109216034 + B3A SINE B2 1 194 -4 1 1256 227 221 44 0 chr1 87979563 87979631 -109215801 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1256 1085 49 0 0 chr1 87979942 87980084 -109215348 + B1_Mus2 SINE Alu 6 147 0 1 1256 339 25 0 0 chr1 87980120 87980160 -109215272 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1256 1151 248 39 11 chr1 87980541 87980822 -109214610 + B4 SINE B4 2 290 -2 1 1256 328 269 0 0 chr1 87981130 87981208 -109214224 + ID4 SINE ID 2 79 -4 1 1256 680 237 25 31 chr1 87981888 87982084 -109213348 - B3A SINE B2 -3 195 1 1 1256 519 211 172 0 chr1 87982325 87982453 -109212979 + B1_Mur4 SINE Alu 1 150 0 1 1256 356 226 12 12 chr1 87982455 87982540 -109212892 + PB1D10 SINE Alu 27 111 -6 1 1256 1438 152 14 0 chr1 87983372 87983595 -109211837 + URR1A DNA MER1_type 1 226 0 1 1256 424 252 9 9 chr1 87983717 87983825 -109211607 - PB1D10 SINE Alu 0 117 10 1 1256 640 194 1 24 chr1 87984080 87984221 -109211211 + B1_Mus1 SINE Alu 1 137 -13 1 1256 414 57 0 0 chr1 87984221 87984274 -109211158 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 1 1256 249 250 62 15 chr1 87985209 87985274 -109210158 + ID_B1 SINE B4 126 193 -31 1 1256 23 0 0 0 chr1 87985872 87985895 -109209537 + AT_rich Low_complexity Low_complexity 1 23 0 1 1256 644 261 60 16 chr1 87986012 87986195 -109209237 + B3A SINE B2 7 197 -1 1 1256 893 277 14 5 chr1 87986226 87986433 -109208999 + B3 SINE B2 2 210 -6 1 1256 377 147 312 10 chr1 87986900 87986996 -109208436 - B1_Mur3 SINE Alu -8 141 17 1 1256 720 182 53 8 chr1 87987004 87987137 -109208295 - B1_Mur4 SINE Alu -11 139 1 1 1256 314 147 135 81 chr1 87987438 87987512 -109207920 + B1_Mur4 SINE Alu 14 91 -59 1 1256 632 256 31 0 chr1 87987899 87988028 -109207404 - ETnERV2-int LTR ERVK -204 7202 7070 1 1256 446 92 0 0 chr1 87988029 87988094 -109207338 + B1_Mus2 SINE Alu 83 147 0 1 1256 328 271 42 0 chr1 87988417 87988535 -109206897 - PB1 SINE Alu -3 124 2 1 1256 2182 136 69 19 chr1 87988731 87989106 -109206326 - ORR1B1 LTR MaLR 0 394 1 1 1256 2103 122 91 9 chr1 87989707 87990046 -109205386 - ORR1B2 LTR MaLR 0 367 1 1 1256 615 241 0 0 chr1 87990309 87990442 -109204990 - B1_Mur1 SINE Alu 0 149 17 1 1256 1389 60 60 6 chr1 87990451 87990634 -109204798 - B2_Mm2 SINE B2 -2 193 1 1 1256 272 266 104 21 chr1 87991228 87991324 -109204108 - PB1 SINE Alu -32 117 14 1 1256 735 227 51 13 chr1 87991594 87991750 -109203682 - RSINE1 SINE B4 0 165 4 1 1256 207 69 0 0 chr1 87992019 87992048 -109203384 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1 1256 1044 58 0 0 chr1 87992048 87992185 -109203247 - B1_Mus2 SINE Alu -8 139 3 1 1256 541 218 45 78 chr1 87992185 87992202 -109203230 - B4 SINE B4 -74 218 70 1 1256 906 251 20 5 chr1 87992209 87992409 -109203023 - B3 SINE B2 -9 207 5 1 1256 462 216 90 49 chr1 87992458 87992580 -109202852 - B1F1 SINE Alu -8 141 15 1 1256 377 222 0 0 chr1 87992859 87992931 -109202501 + ID4 SINE ID 2 73 -10 1 1256 254 212 212 0 chr1 87992986 87993052 -109202380 + PB1D10 SINE Alu 10 89 -28 1 1256 439 205 299 6 chr1 87993067 87993234 -109202198 - B3 SINE B2 0 216 1 1 1256 1116 78 0 7 chr1 87993343 87993485 -109201947 - B1_Mus1 SINE Alu -7 141 1 1 1256 224 346 0 13 chr1 87993826 87993905 -109201527 + ID4 SINE ID 1 78 -5 1 1256 23 0 0 0 chr1 87994048 87994071 -109201361 + AT_rich Low_complexity Low_complexity 1 23 0 1 1256 746 83 182 0 chr1 87994545 87994677 -109200755 + B2_Mm1t SINE B2 2 157 -36 1 1256 261 0 0 0 chr1 87994680 87994709 -109200723 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1256 675 233 94 11 chr1 87995332 87995523 -109199909 - B4A SINE B4 -83 209 3 1 1256 917 169 0 0 chr1 87997377 87997525 -109197907 - B1_Mus1 SINE Alu 0 148 1 1 1256 1161 51 0 0 chr1 87997969 87998106 -109197326 + B1_Mus1 SINE Alu 1 137 -11 1 1256 364 236 34 0 chr1 87998306 87998395 -109197037 + B3 SINE B2 119 210 -6 1 1256 1027 229 39 97 chr1 87999681 87999991 -109195441 + B4A SINE B4 1 292 0 1 1256 335 254 30 0 chr1 88000269 88000368 -109195064 + PB1 SINE Alu 27 209 -102 1 1256 242 273 0 0 chr1 88000394 88000449 -109194983 - ID4_ SINE ID -11 72 18 2 1256 315 0 0 0 chr1 88000467 88000502 -109194930 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 1256 1051 215 29 5 chr1 88001138 88001344 -109194088 + B3 SINE B2 1 211 -5 4 1256 21 0 0 0 chr1 88001344 88001365 -109194067 + AT_rich Low_complexity Low_complexity 1 21 0 5 1256 939 72 229 7 chr1 88001368 88001521 -109193911 + B2_Mm2 SINE B2 2 188 -7 6 1256 1401 82 6 0 chr1 88001528 88001711 -109193721 + B2_Mm1a SINE B2 2 185 -8 7 1256 201 116 47 0 chr1 88002865 88002908 -109192524 + T-rich Low_complexity Low_complexity 2 46 0 8 1256 1119 79 0 0 chr1 88002915 88003055 -109192377 - B1_Mus1 SINE Alu -7 141 2 9 1256 215 299 30 0 chr1 88003091 88003158 -109192274 + MIR SINE MIR 194 262 0 1 1256 270 116 0 0 chr1 88003842 88003885 -109191547 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1256 510 169 192 0 chr1 88004133 88004279 -109191153 + B2_Mm2 SINE B2 9 183 -10 1 1256 433 162 250 3 chr1 88004282 88004405 -109191027 + B1_Mus2 SINE Alu 1 149 -1 1 1256 204 40 0 0 chr1 88004603 88004628 -109190804 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1256 1039 58 0 0 chr1 88004628 88004765 -109190667 - B2_Mm2 SINE B2 -34 161 25 1 1256 515 198 16 0 chr1 88009232 88009348 -109186084 + B1_Mur3 SINE Alu 1 130 -20 1 1256 354 275 12 0 chr1 88009905 88009985 -109185447 - RSINE1 SINE B4 -83 82 2 1 1256 1407 91 11 0 chr1 88010180 88010366 -109185066 - B2_Mm2 SINE B2 -7 188 1 1 1256 198 0 0 0 chr1 88010973 88010995 -109184437 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 1 1256 1227 54 0 0 chr1 88011215 88011363 -109184069 + B1_Mus1 SINE Alu 1 148 0 2 1256 462 163 87 0 chr1 88012539 88012631 -109182801 - B1_Mur1 SINE Alu -28 121 22 2 1256 297 265 58 10 chr1 88013554 88013657 -109181775 - B3A SINE B2 -1 197 90 2 1256 386 269 202 0 chr1 88013706 88013825 -109181607 - RSINE1 SINE B4 -7 158 16 2 1256 478 291 28 21 chr1 88014032 88014176 -109181256 - B3 SINE B2 -25 191 47 2 1256 304 85 21 0 chr1 88014163 88014210 -109181222 - B1_Mus1 SINE Alu -89 59 12 2 1256 312 333 0 18 chr1 88014209 88014319 -109181113 + B3A SINE B2 74 181 -17 2 1256 679 102 143 86 chr1 88014819 88014959 -109180473 + B1_Mus1 SINE Alu 1 148 0 2 1256 685 186 48 0 chr1 88015414 88015538 -109179894 + B1_Mur3 SINE Alu 1 130 -19 2 1256 726 101 0 0 chr1 88015540 88015649 -109179783 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 2 1256 411 294 9 35 chr1 88016612 88016725 -109178707 + PB1D10 SINE Alu 8 117 0 3 1256 641 282 67 39 chr1 88017300 88017584 -109177848 + B4A SINE B4 1 292 0 3 1256 227 300 97 29 chr1 88017617 88017639 -109177793 + PB1D9 SINE Alu 10 117 -1 3 1256 285 244 63 13 chr1 88017639 88017718 -109177714 + ID_B1 SINE B4 142 224 0 3 1256 881 178 7 14 chr1 88017733 88017881 -109177551 + B1_Mur3 SINE Alu 1 147 -2 3 1256 456 292 111 0 chr1 88018185 88018329 -109177103 + RSINE1 SINE B4 6 165 0 3 1256 25 0 0 0 chr1 88018363 88018388 -109177044 + AT_rich Low_complexity Low_complexity 1 25 0 3 1256 640 177 177 37 chr1 88018587 88018751 -109176681 + B3 SINE B2 1 187 -29 3 1256 459 215 28 18 chr1 88019203 88019312 -109176120 + B3A SINE B2 2 111 -87 3 1256 344 289 0 0 chr1 88019505 88019581 -109175851 + RSINE1 SINE B4 5 80 -85 3 1256 369 43 0 0 chr1 88019597 88019644 -109175788 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1256 189 196 0 0 chr1 88019649 88019695 -109175737 + T-rich Low_complexity Low_complexity 3 48 0 4 1256 1044 116 0 13 chr1 88019696 88019845 -109175587 - B1_Mus1 SINE Alu -1 147 1 4 1256 1458 73 5 5 chr1 88019927 88020119 -109175313 - B2_Mm1t SINE B2 0 193 2 4 1256 386 175 24 1 chr1 88020218 88020321 -109175111 + B1_Mur3 SINE Alu 6 140 -9 4 1256 913 123 7 0 chr1 88020581 88020735 -109174697 + URR1A DNA MER1_type 72 226 0 4 1256 372 279 42 24 chr1 88020587 88020752 -109174680 - CYRA11_Mm Unknown Y-chromosome -297 320 153 4 1256 260 275 22 11 chr1 88020734 88020826 -109174606 - ORR1E LTR MaLR -201 158 66 4 1256 1171 47 0 13 chr1 88021255 88021405 -109174027 + B1_Mus1 SINE Alu 1 148 0 4 1256 849 208 112 0 chr1 88021424 88021602 -109173830 - B3 SINE B2 -17 199 2 4 1256 318 317 32 24 chr1 88021917 88022040 -109173392 + PB1 SINE Alu 2 125 -2 5 1256 183 129 0 0 chr1 88022049 88022080 -109173352 + (CAGA)n Simple_repeat Simple_repeat 3 33 0 5 1256 865 157 7 0 chr1 88023452 88023599 -109171833 - B1_Mur4 SINE Alu -1 149 2 5 1256 379 276 20 0 chr1 88023878 88023976 -109171456 - PB1D7 SINE Alu 0 120 21 5 1256 828 251 14 14 chr1 88024251 88024461 -109170971 + B3 SINE B2 1 210 -6 5 1256 648 195 16 0 chr1 88024479 88024607 -109170825 + B1_Mur2 SINE Alu 19 148 -1 5 1256 282 27 0 0 chr1 88025086 88025123 -109170309 + B1_Mus1 SINE Alu 2 38 -110 5 1256 862 174 0 32 chr1 88025164 88025318 -109170114 - B1_Mur1 SINE Alu 0 149 1 5 1256 314 286 28 28 chr1 88025329 88025437 -109169995 - PB1D10 SINE Alu -8 109 2 5 1256 2002 169 160 36 chr1 88025615 88026064 -109169368 - RLTR18B LTR ERVK -4 508 4 5 1256 419 292 25 0 chr1 88027381 88027501 -109167931 - B1_Mur1 SINE Alu -2 147 25 6 1256 610 260 87 0 chr1 88027522 88027672 -109167760 - B3A SINE B2 -34 164 2 6 1256 207 0 0 0 chr1 88027706 88027729 -109167703 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 1256 1238 35 0 0 chr1 88028071 88028216 -109167216 + B1_Mus2 SINE Alu 3 147 0 6 1256 1578 27 32 0 chr1 88028574 88028759 -109166673 + B2_Mm1t SINE B2 2 192 -1 6 1256 198 103 0 0 chr1 88029324 88029353 -109166079 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1256 498 242 46 42 chr1 88029531 88029719 -109165713 - MTEb LTR MaLR 0 379 205 6 1256 1229 35 0 0 chr1 88030617 88030758 -109164674 - B1_Mus2 SINE Alu -5 142 2 6 1256 227 300 10 39 chr1 88031108 88031212 -109164220 + L1MB7 LINE L1 6068 6168 -16 6 1256 329 233 0 113 chr1 88031305 88031402 -109164030 + PB1D9 SINE Alu 7 92 -28 6 1256 761 210 97 27 chr1 88032545 88032679 -109162753 + B3 SINE B2 18 162 -54 7 1256 297 0 0 0 chr1 88032679 88032712 -109162720 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1256 761 210 97 27 chr1 88032712 88032763 -109162669 + B3 SINE B2 163 215 -1 7 1256 2554 56 71 0 chr1 88032894 88033217 -109162215 - ORR1A1 LTR MaLR 0 346 1 7 1256 880 148 222 22 chr1 88033935 88034115 -109161317 - B3 SINE B2 0 216 1 7 1256 261 246 8 120 chr1 88034203 88034216 -109161216 + MT2B2 LTR ERVL 154 261 -320 7 1256 338 286 18 37 chr1 88034216 88034325 -109161107 + ID_B1 SINE B4 80 186 -38 7 1256 603 131 0 39 chr1 88034366 88034469 -109160963 - PB1D9 SINE Alu -1 119 21 7 1256 43 0 0 0 chr1 88034529 88034572 -109160860 + AT_rich Low_complexity Low_complexity 1 43 0 7 1256 583 260 40 0 chr1 88034763 88034913 -109160519 + RSINE1 SINE B4 2 157 -8 7 1256 591 15 0 0 chr1 88035072 88035140 -109160292 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1256 383 222 0 69 chr1 88036019 88036106 -109159326 - ID4 SINE ID -1 82 2 8 1256 1183 62 14 0 chr1 88036416 88036562 -109158870 + B1_Mus1 SINE Alu 1 148 0 8 1256 1195 61 0 0 chr1 88036565 88036712 -109158720 + B1_Mus2 SINE Alu 1 147 0 8 1256 261 274 48 0 chr1 88037254 88037338 -109158094 + PB1D10 SINE Alu 22 109 -8 8 1256 314 224 242 10 chr1 88038085 88038184 -109157248 - B3A SINE B2 -50 148 27 8 1256 1101 50 65 164 chr1 88038193 88038407 -109157025 - B2_Mm2 SINE B2 -1 194 2 8 1256 1306 34 80 48 chr1 88038408 88038596 -109156836 - B2_Mm2 SINE B2 0 195 2 8 1256 1319 22 78 62 chr1 88038598 88038790 -109156642 - B2_Mm2 SINE B2 0 195 1 8 1256 238 292 30 30 chr1 88039001 88039068 -109156364 - Tigger5 DNA MER2_type -2228 178 112 8 1256 254 254 0 0 chr1 88041595 88041662 -109153770 + (ATG)n Simple_repeat Simple_repeat 2 68 0 8 1256 930 143 0 0 chr1 88041680 88041820 -109153612 - B1_Mus1 SINE Alu 0 148 9 9 1256 184 200 0 35 chr1 88041991 88042048 -109153384 + T-rich Low_complexity Low_complexity 4 58 0 9 1256 1001 203 36 9 chr1 88042429 88042648 -109152784 - URR1B DNA MER1_type 0 225 1 9 1256 330 185 116 14 chr1 88042758 88042859 -109152573 - PB1D7 SINE Alu -10 110 1 9 1256 367 178 200 0 chr1 88043235 88043325 -109152107 + RSINE1 SINE B4 2 109 -56 9 1256 722 195 117 35 chr1 88043401 88043598 -109151834 + B3 SINE B2 2 214 -2 9 1256 234 0 0 0 chr1 88043627 88043653 -109151779 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1256 315 0 0 0 chr1 88043653 88043687 -109151745 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1256 212 274 146 15 chr1 88043705 88043842 -109151590 + B2_Mm2 SINE B2 38 192 -3 9 1256 806 247 5 40 chr1 88044406 88044604 -109150828 + B3A SINE B2 1 191 -7 9 1256 465 312 18 65 chr1 88044608 88044776 -109150656 + RSINE1 SINE B4 1 160 -5 1 1256 22 35 0 0 chr1 88044783 88044812 -109150620 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 452 301 65 61 chr1 88044972 88045266 -109150166 - ORR1E LTR MaLR -36 323 29 1 1256 566 299 10 25 chr1 88045403 88045602 -109149830 + B3A SINE B2 1 196 -2 1 1256 291 338 138 0 chr1 88045711 88045856 -109149576 + MER21B LTR ERV1 34 198 -665 1 1256 488 215 102 54 chr1 88045886 88045913 -109149519 + ID_B1 SINE B4 50 166 -58 1 1256 842 93 31 0 chr1 88045913 88046042 -109149390 + B1_Mus1 SINE Alu 10 142 -6 1 1256 488 215 102 54 chr1 88046042 88046053 -109149379 + ID_B1 SINE B4 167 224 0 1 1256 993 275 107 0 chr1 88046130 88046475 -109148957 + MER21B LTR ERV1 422 803 -60 1 1256 1343 91 43 5 chr1 88046534 88046721 -109148711 + B2_Mm2 SINE B2 2 195 0 1 1256 2492 134 44 151 chr1 88046912 88047502 -109147930 - RLTR24 LTR ERV1 0 529 3 1 1256 302 296 45 67 chr1 88047640 88047774 -109147658 - MLT1K LTR MaLR -339 256 126 1 1256 679 322 19 98 chr1 88048343 88048494 -109146938 - B4A SINE B4 0 292 157 1 1256 2528 59 9 39 chr1 88048494 88048831 -109146601 - ORR1A2 LTR MaLR 0 327 1 1 1256 679 322 19 98 chr1 88048831 88048996 -109146436 - B4A SINE B4 -136 156 1 1 1256 22 35 0 0 chr1 88049099 88049128 -109146304 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 1087 83 0 0 chr1 88049131 88049276 -109146156 + B1_Mus1 SINE Alu 2 146 -2 1 1256 591 241 134 0 chr1 88049297 88049471 -109145961 - B3 SINE B2 0 198 2 1 1256 790 224 73 39 chr1 88049475 88049679 -109145753 - B3 SINE B2 -5 211 1 1 1256 315 0 0 0 chr1 88049740 88049775 -109145657 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1256 242 116 0 23 chr1 88050536 88050580 -109144852 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1 1256 946 48 0 0 chr1 88050643 88050768 -109144664 - B1_Mus2 SINE Alu -21 126 2 1 1256 328 236 22 33 chr1 88050963 88051055 -109144377 - RSINE1 SINE B4 -73 92 2 1 1256 687 25 0 0 chr1 88051659 88051740 -109143692 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1256 266 250 62 12 chr1 88052060 88052141 -109143291 + RSINE1 SINE B4 33 117 -48 1 1256 673 203 84 42 chr1 88052207 88052397 -109143035 - MTC LTR MaLR 0 421 224 1 1256 560 260 14 22 chr1 88053612 88053777 -109141655 - B3A SINE B2 -1 197 45 1 1256 1200 194 5 5 chr1 88053797 88054009 -109141423 + B3 SINE B2 1 212 -4 1 1256 569 226 23 46 chr1 88054051 88054181 -109141251 + B3 SINE B2 13 139 -77 1 1256 564 188 0 0 chr1 88054411 88054523 -109140909 - ID_B1 SINE B4 -18 206 95 1 1256 1046 68 0 0 chr1 88054771 88054917 -109140515 - B1_Mus1 SINE Alu 0 148 3 1 1256 493 264 40 7 chr1 88055244 88055393 -109140039 + B3A SINE B2 2 155 -43 1 1256 1123 238 164 56 chr1 88055434 88056027 -109139405 - L1MA9 LINE L1 -65 6247 5591 1 1256 297 260 62 23 chr1 88056104 88056234 -109139198 - L1MA9 LINE L1 -689 5608 5474 1 1256 299 254 94 132 chr1 88056222 88056381 -109139051 - B3 SINE B2 -7 209 39 1 1256 232 250 9 65 chr1 88056449 88056556 -109138876 - L1MA9 LINE L1 -783 5385 5285 1 1256 1133 192 9 28 chr1 88056864 88057078 -109138354 + B3 SINE B2 4 213 -3 1 1256 487 282 54 34 chr1 88057345 88057492 -109137940 + RSINE1 SINE B4 16 165 0 1 1256 451 291 25 0 chr1 88057519 88057677 -109137755 + (CA)n Simple_repeat Simple_repeat 2 163 0 1 1256 2388 79 9 3 chr1 88058775 88059093 -109136339 - L1_Mus2 LINE L1 0 6566 6247 1 1256 420 185 0 0 chr1 88059111 88059192 -109136240 - PB1D9 SINE Alu 0 120 40 1 1256 1812 179 82 65 chr1 88059918 88060470 -109134962 - RLTR20A LTR ERVK 0 541 5 1 1256 1371 58 10 50 chr1 88061512 88061712 -109133720 + B2_Mm1a SINE B2 1 192 -1 1 1256 317 294 40 86 chr1 88062058 88062233 -109133199 - L1MC3 LINE L1 -1623 6162 5996 1 1256 1307 112 16 5 chr1 88062359 88062548 -109132884 - B2_Mm2 SINE B2 -4 191 1 1 1256 440 301 135 46 chr1 88062649 88062952 -109132480 - L1MEg LINE L1 -4810 1274 945 1 1256 219 203 43 14 chr1 88063262 88063332 -109132100 + T-rich Low_complexity Low_complexity 5 76 0 1 1256 480 139 51 137 chr1 88063362 88063479 -109131953 - B1_Mur2 SINE Alu -2 147 41 1 1256 620 127 0 9 chr1 88063481 88063592 -109131840 + (TCC)n Simple_repeat Simple_repeat 3 112 0 1 1256 526 223 87 40 chr1 88063601 88063727 -109131705 - B1_Mur1 SINE Alu -5 144 13 1 1256 738 197 43 22 chr1 88063728 88063911 -109131521 + B3A SINE B2 2 195 0 1 1256 336 242 194 31 chr1 88064114 88064212 -109131220 + PB1 SINE Alu 7 120 -7 1 1256 264 139 23 0 chr1 88064217 88064260 -109131172 + ID4 SINE ID 1 44 -39 1 1256 234 204 74 0 chr1 88064223 88064277 -109131155 + tRNA-Ala-GCY_ tRNA tRNA 1 58 -17 1 1256 612 255 153 50 chr1 88064658 88064860 -109130572 - ID_B1 SINE B4 0 224 2 1 1256 940 203 39 10 chr1 88064892 88065096 -109130336 + B3 SINE B2 1 210 -6 1 1256 782 68 254 0 chr1 88065102 88065220 -109130212 + B1_Mus1 SINE Alu 1 148 0 1 1256 321 256 0 193 chr1 88065347 88065431 -109130001 + PB1D10 SINE Alu 1 64 -53 1 1256 1217 116 10 21 chr1 88065431 88065624 -109129808 + B2_Mm2 SINE B2 1 191 -4 1 1256 321 256 0 193 chr1 88065624 88065684 -109129748 + PB1D10 SINE Alu 65 117 0 1 1256 1306 90 32 5 chr1 88065724 88065913 -109129519 - B2_Mm2 SINE B2 -1 194 1 1 1256 22 0 0 0 chr1 88066456 88066478 -109128954 + AT_rich Low_complexity Low_complexity 1 22 0 1 1256 229 287 41 65 chr1 88066659 88066782 -109128650 + RMER12 LTR ERVK 729 848 -474 1 1256 439 223 9 28 chr1 88066720 88066862 -109128570 - B3A SINE B2 -14 202 2 1 1256 1178 48 0 20 chr1 88066955 88067104 -109128328 + B1_Mus2 SINE Alu 2 147 0 1 1256 210 143 0 0 chr1 88067104 88067139 -109128293 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1256 1427 45 78 0 chr1 88067238 88067256 -109128176 - B2_Mm1t SINE B2 0 193 176 1 1256 315 0 0 0 chr1 88067256 88067291 -109128141 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1256 1427 45 78 0 chr1 88067291 88067451 -109127981 - B2_Mm1t SINE B2 -18 175 2 1 1256 1550 42 16 21 chr1 88067451 88067644 -109127788 - B2_Mm2 SINE B2 -2 193 2 1 1256 216 185 44 44 chr1 88067943 88068011 -109127421 + BC1_Mm scRNA scRNA 44 111 -41 1 1256 378 0 0 0 chr1 88068072 88068114 -109127318 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1256 1178 51 0 0 chr1 88068116 88068254 -109127178 - B1_Mus2 SINE Alu -6 141 4 1 1256 912 118 14 7 chr1 88069279 88069424 -109126008 - L1_Mus3 LINE L1 -245 6393 6248 1 1256 537 228 34 26 chr1 88069464 88069581 -109125851 - PB1D9 SINE Alu 0 120 3 1 1256 490 289 72 21 chr1 88069738 88069975 -109125457 - L1_Rod LINE L1 -170 5677 5429 1 1256 194 116 0 23 chr1 88070472 88070516 -109124916 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1256 21 36 0 0 chr1 88070520 88070548 -109124884 + AT_rich Low_complexity Low_complexity 1 28 0 1 1256 1374 84 17 0 chr1 88070550 88070728 -109124704 + B2_Mm2 SINE B2 1 181 -14 1 1256 225 0 0 0 chr1 88070773 88070798 -109124634 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1256 1021 46 114 0 chr1 88070804 88070935 -109124497 - B1_Mus2 SINE Alu 0 147 2 1 1256 840 214 23 50 chr1 88071022 88071243 -109124189 - B3 SINE B2 0 216 2 1 1256 1329 74 40 0 chr1 88071331 88071506 -109123926 - B2_Mm2 SINE B2 -12 183 2 1 1256 345 187 14 3 chr1 88072039 88072113 -109123319 + B1_Mus1 SINE Alu 25 96 -21 1 1256 614 208 19 45 chr1 88072498 88072693 -109122739 - B3 SINE B2 -9 186 4 1 1256 956 231 78 99 chr1 88072756 88073140 -109122292 + MTE2a LTR MaLR 4 379 0 1 1256 647 271 138 19 chr1 88073769 88074029 -109121403 + B4 SINE B4 2 292 0 1 1256 447 289 26 26 chr1 88074313 88074430 -109121002 - PB1D10 SINE Alu 0 117 1 1 1256 382 243 43 75 chr1 88074445 88074618 -109120814 - B3A SINE B2 0 195 20 1 1256 374 257 61 9 chr1 88074637 88074751 -109120681 + B1F SINE Alu 22 141 -8 1 1256 358 358 69 60 chr1 88074820 88075140 -109120292 - L1MC4 LINE L1 -179 7703 7383 1 1256 596 126 0 50 chr1 88076240 88076340 -109119092 - B1_Mus2 SINE Alu -51 96 2 1 1256 23 54 0 0 chr1 88076402 88076439 -109118993 + AT_rich Low_complexity Low_complexity 1 37 0 1 1256 397 219 0 0 chr1 88076466 88076539 -109118893 - B3A SINE B2 -125 73 1 1 1256 304 258 149 11 chr1 88076870 88076964 -109118468 - PB1D10 SINE Alu 0 117 11 1 1256 688 203 73 0 chr1 88077056 88077179 -109118253 - B1_Mur4 SINE Alu -6 144 13 1 1256 442 296 103 7 chr1 88079397 88079543 -109115889 + ID_B1 SINE B4 47 206 -18 1 1256 894 222 56 14 chr1 88079855 88080070 -109115362 + ID_B1 SINE B4 1 224 0 1 1256 345 282 13 0 chr1 88080108 88080186 -109115246 - MER20 DNA MER1_type -139 80 2 1 1256 508 226 52 9 chr1 88080208 88080324 -109115108 + URR1A DNA MER1_type 59 179 -47 1 19 2011 112 81 23 chr1 88080307 88080653 -109114779 - RLTR28 LTR ERVL -16 508 143 1 1257 459 0 0 0 chr1 88080821 88080872 -109114560 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 1257 1162 76 0 0 chr1 88080872 88081017 -109114415 - B1_Mm SINE Alu -2 145 1 1 1257 350 269 0 0 chr1 88081157 88081235 -109114197 + ID4_ SINE ID 4 81 -2 1 1257 1373 74 10 41 chr1 88081274 88081470 -109113962 + B2_Mm1t SINE B2 1 190 -3 1 1257 786 161 23 8 chr1 88081480 88081611 -109113821 + B1_Mus2 SINE Alu 2 134 -13 1 1257 180 273 71 18 chr1 88081814 88081870 -109113562 - L3b LINE CR1 -104 378 320 1 1257 837 189 161 5 chr1 88082758 88082788 -109112644 - B3 SINE B2 -1 215 187 2 1257 222 37 0 0 chr1 88082788 88082815 -109112617 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 1257 837 189 161 5 chr1 88082815 88082970 -109112462 - B3 SINE B2 -30 186 3 2 1257 261 303 107 49 chr1 88083591 88083796 -109111636 + MIR SINE MIR 46 262 0 2 1257 477 262 10 26 chr1 88084038 88084160 -109111272 - B1F SINE Alu -1 149 32 2 1257 347 241 92 0 chr1 88084227 88084314 -109111118 - B3 SINE B2 -6 210 116 2 1257 749 175 0 0 chr1 88084833 88084953 -109110479 - B3 SINE B2 -95 121 2 2 1257 371 211 152 40 chr1 88085044 88085143 -109110289 + PB1D10 SINE Alu 8 117 0 2 1257 244 200 0 0 chr1 88085161 88085221 -109110211 - L1ME4a LINE L1 -2 6122 6063 2 1257 480 303 0 0 chr1 88085737 88085869 -109109563 + B1_Mur1 SINE Alu 1 132 -17 2 1257 414 79 0 0 chr1 88087425 88087488 -109107944 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1257 756 230 19 43 chr1 88088057 88088266 -109107166 - ID_B1 SINE B4 -17 207 4 2 1257 180 77 0 0 chr1 88088282 88088308 -109107124 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1257 1329 107 21 0 chr1 88088538 88088725 -109106707 + B2_Mm2 SINE B2 1 191 -4 2 1257 820 139 29 14 chr1 88088739 88088878 -109106554 + B1_Mur2 SINE Alu 9 149 0 2 1257 669 229 106 0 chr1 88089309 88089479 -109105953 + B4A SINE B4 87 274 -18 2 1257 328 291 50 50 chr1 88089971 88089998 -109105434 - B1_Mur4 SINE Alu -2 148 123 2 1257 715 192 157 0 chr1 88089998 88090170 -109105262 - B3 SINE B2 -15 201 3 2 1257 429 233 68 7 chr1 88090170 88090283 -109105149 - PB1D9 SINE Alu -28 122 8 2 1257 245 316 92 0 chr1 88090207 88090305 -109105127 - B4A SINE B4 -118 174 68 2 1257 31 58 0 0 chr1 88091126 88091178 -109104254 + AT_rich Low_complexity Low_complexity 1 52 0 2 1257 212 0 36 0 chr1 88091196 88091224 -109104208 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1257 1165 44 0 0 chr1 88091224 88091361 -109104071 - B1_Mus2 SINE Alu -10 137 1 2 1257 1145 132 63 0 chr1 88091502 88091691 -109103741 - RLTR11A LTR ERVK -327 201 1 2 1257 321 271 208 33 chr1 88091702 88091885 -109103547 + B4A SINE B4 4 218 -74 2 1257 857 159 43 0 chr1 88092053 88092191 -109103241 - B1_Mur3 SINE Alu -1 148 5 2 1257 312 232 129 20 chr1 88092657 88092758 -109102674 - PB1D9 SINE Alu -8 112 1 2 1257 351 113 0 0 chr1 88093063 88093125 -109102307 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1257 780 186 167 6 chr1 88093507 88093675 -109101757 - B3 SINE B2 -12 204 10 2 1257 607 168 28 0 chr1 88093737 88093844 -109101588 + B1_Mur1 SINE Alu 40 149 0 2 1257 945 224 5 28 chr1 88093847 88094063 -109101369 - B3 SINE B2 -5 211 1 2 1257 666 222 8 0 chr1 88094168 88094294 -109101138 - RSINE1 SINE B4 -36 129 3 2 1257 817 267 113 0 chr1 88095417 88095612 -109099820 + ID_B1 SINE B4 6 222 -2 2 1257 692 181 52 8 chr1 88096140 88096274 -109099158 - B1_Mur2 SINE Alu -1 148 9 2 1257 260 226 3 32 chr1 88096275 88096368 -109099064 - MIRc SINE MIR -107 169 72 2 1257 695 253 174 8 chr1 88096693 88096940 -109098492 - B4A SINE B4 -4 288 1 2 1257 306 259 35 35 chr1 88097585 88097701 -109097731 - B1_Mus2 SINE Alu -3 144 29 2 1257 422 243 9 27 chr1 88097597 88097707 -109097725 - ID_B1 SINE B4 -13 211 104 2 1257 548 269 62 0 chr1 88098186 88098316 -109097116 + ID_B1 SINE B4 26 163 -61 2 1257 573 280 0 47 chr1 88099155 88099305 -109096127 + B1F1 SINE Alu 1 143 -6 2 1257 195 42 0 0 chr1 88099305 88099329 -109096103 + (GAA)n Simple_repeat Simple_repeat 2 25 0 2 1257 579 292 36 0 chr1 88100050 88100187 -109095245 + RSINE1 SINE B4 18 159 -6 2 1257 215 211 0 0 chr1 88100420 88100458 -109094974 + polypyrimidine Low_complexity Low_complexity 1 38 0 2 1257 651 253 112 0 chr1 88100652 88100830 -109094602 + B3A SINE B2 1 198 0 2 1257 381 283 75 9 chr1 88101037 88101144 -109094288 + PB1D10 SINE Alu 1 114 -3 2 1257 413 238 18 37 chr1 88101568 88101677 -109093755 - PB1D10 SINE Alu -6 111 5 2 1257 668 176 0 40 chr1 88102788 88102912 -109092520 + PB1D9 SINE Alu 1 119 -1 2 1257 26 0 0 0 chr1 88102930 88102956 -109092476 + AT_rich Low_complexity Low_complexity 1 26 0 2 1257 28 29 0 0 chr1 88102988 88103023 -109092409 + AT_rich Low_complexity Low_complexity 1 35 0 2 1257 198 0 0 0 chr1 88103211 88103233 -109092199 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1257 898 250 34 5 chr1 88103352 88103561 -109091871 - B3 SINE B2 0 216 2 2 1257 596 261 7 53 chr1 88103590 88103740 -109091692 + B1_Mur1 SINE Alu 2 144 -5 2 1257 22 0 0 0 chr1 88104393 88104415 -109091017 + AT_rich Low_complexity Low_complexity 1 22 0 2 1257 533 295 65 0 chr1 88104728 88104867 -109090565 + B1F SINE Alu 1 148 -1 2 1257 1130 248 64 4 chr1 88104989 88105256 -109090176 + B4 SINE B4 8 290 -2 2 1257 1244 48 0 0 chr1 88106285 88106432 -109089000 - B1_Mm SINE Alu 0 147 1 2 1257 439 327 45 108 chr1 88106961 88107406 -109088026 - RLTR25B LTR ERVK -607 421 5 2 1257 935 286 79 20 chr1 88107451 88107807 -109087625 - MTEa LTR MaLR 0 379 3 2 1257 189 239 65 0 chr1 88108116 88108162 -109087270 - MIRb SINE MIR -99 169 121 2 1257 449 132 0 24 chr1 88108380 88108465 -109086967 + (CATA)n Simple_repeat Simple_repeat 2 84 0 2 1257 1171 28 28 0 chr1 88108980 88109123 -109086309 - B1_Mus2 SINE Alu 0 147 1 2 1257 213 65 0 0 chr1 88110266 88110297 -109085135 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1257 766 69 0 19 chr1 88110297 88110400 -109085032 - B1_Mus1 SINE Alu -8 140 40 2 1257 333 190 37 25 chr1 88110332 88110413 -109085019 - RLTR25B LTR ERVK -519 509 428 2 1257 464 236 115 83 chr1 88111042 88111259 -109084173 - MER58B DNA MER1_type -3 338 115 2 1257 348 205 51 13 chr1 88111528 88111607 -109083825 - PB1D10 SINE Alu -8 109 28 2 1257 586 257 77 16 chr1 88111823 88112130 -109083302 - MTD LTR MaLR -2 419 13 2 1257 368 125 0 15 chr1 88112131 88112196 -109083236 + (GAAAA)n Simple_repeat Simple_repeat 3 66 0 2 1257 189 0 0 0 chr1 88112197 88112218 -109083214 + (CAAGC)n Simple_repeat Simple_repeat 1 21 0 2 1257 226 333 37 47 chr1 88112908 88112931 -109082501 + ID_B1 SINE B4 70 91 -133 2 1257 474 121 50 13 chr1 88112931 88113033 -109082399 + PB1D10 SINE Alu 1 115 -5 2 1257 183 80 0 0 chr1 88113546 88113571 -109081861 + (TCC)n Simple_repeat Simple_repeat 3 27 0 2 1257 489 162 59 10 chr1 88113588 88113694 -109081738 - B1_Mur3 SINE Alu -13 107 1 2 1257 430 340 67 19 chr1 88113720 88113930 -109081502 + ID_B1 SINE B4 1 220 -4 2 1257 270 295 92 37 chr1 88114662 88114771 -109080661 - MIRb SINE MIR -102 166 52 2 1257 481 292 27 14 chr1 88115407 88115553 -109079879 - ID_B1 SINE B4 0 224 77 2 1257 884 244 155 12 chr1 88115602 88116113 -109079319 - L1M4 LINE L1 -2694 3452 2869 2 1257 387 317 57 52 chr1 88116392 88116585 -109078847 - Charlie1 DNA MER1_type -1245 1536 1343 2 1257 180 0 0 0 chr1 88116737 88116757 -109078675 + (CAGTG)n Simple_repeat Simple_repeat 1 20 0 2 1257 264 271 86 47 chr1 88116779 88116850 -109078582 - Charlie1 DNA MER1_type -1807 974 897 2 1257 1384 96 11 0 chr1 88116850 88117038 -109078394 - B2_Mm1t SINE B2 -3 190 1 2 1257 264 271 86 47 chr1 88117038 88117094 -109078338 - Charlie1 DNA MER1_type -1885 896 842 2 1257 806 209 0 7 chr1 88117135 88117275 -109078157 + B1_Mur4 SINE Alu 11 149 -1 2 1257 849 103 17 0 chr1 88117285 88117402 -109078030 + PB1D9 SINE Alu 2 120 0 2 1257 189 163 0 0 chr1 88117402 88117451 -109077981 + A-rich Low_complexity Low_complexity 1 49 0 2 1257 207 234 0 0 chr1 88117554 88117631 -109077801 + (TATG)n Simple_repeat Simple_repeat 1 77 0 2 1257 242 302 0 11 chr1 88117746 88117927 -109077505 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 1257 692 319 38 19 chr1 88117933 88118144 -109077288 - B4A SINE B4 -76 216 2 2 1257 815 209 12 163 chr1 88118171 88118423 -109077009 - B3 SINE B2 0 216 3 2 1257 386 323 45 51 chr1 88118606 88118655 -109076777 + B4A SINE B4 50 221 -68 2 1257 585 119 153 48 chr1 88118655 88118779 -109076653 + B1_Mur3 SINE Alu 7 143 -6 2 1257 240 100 0 0 chr1 88118782 88118822 -109076610 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 2 1257 219 218 33 98 chr1 88119000 88119061 -109076371 + RSINE1 SINE B4 4 60 -232 2 1257 566 248 44 44 chr1 88119110 88119270 -109076162 + RSINE1 SINE B4 3 162 -3 2 1257 343 289 164 36 chr1 88119315 88119455 -109075977 + RSINE1 SINE B4 4 161 -4 2 1257 622 280 35 76 chr1 88119511 88119708 -109075724 + B3A SINE B2 5 193 -5 2 1257 509 207 8 112 chr1 88119732 88119857 -109075575 + PB1D9 SINE Alu 9 120 0 2 1257 391 247 402 6 chr1 88121155 88121314 -109074118 + ID_B1 SINE B4 3 224 0 2 1257 1516 200 126 10 chr1 88121460 88121795 -109073637 - MTD LTR MaLR -20 399 8 2 1257 879 101 12 152 chr1 88122096 88122260 -109073172 - B1_Mus2 SINE Alu -6 141 1 2 1257 718 268 33 27 chr1 88122497 88122681 -109072751 - B3 SINE B2 -31 185 1 2 1257 189 0 0 0 chr1 88123565 88123586 -109071846 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2 1257 2074 270 113 50 chr1 88123635 88124536 -109070896 - Lx8 LINE L1 -326 7147 6190 2 1257 358 285 54 44 chr1 88124536 88124731 -109070701 - B3 SINE B2 0 216 2 2 1257 319 214 0 0 chr1 88124755 88124811 -109070621 - B3 SINE B2 -7 209 154 2 1257 619 212 29 36 chr1 88124842 88124979 -109070453 - B3 SINE B2 -53 163 28 2 1257 855 290 5 5 chr1 88125287 88125502 -109069930 - B3 SINE B2 -1 215 1 3 1257 1288 34 0 0 chr1 88125589 88125736 -109069696 + B1_Mus2 SINE Alu 1 147 0 3 1257 818 145 61 0 chr1 88125772 88125903 -109069529 + B1_Mur4 SINE Alu 2 140 -10 3 1257 1177 164 40 5 chr1 88126460 88126662 -109068770 - B3 SINE B2 0 216 8 3 1257 503 187 133 158 chr1 88126686 88126889 -109068543 - B3A SINE B2 0 198 1 3 1257 842 223 0 0 chr1 88127094 88127242 -109068190 - RSINE1 SINE B4 -15 150 3 3 1257 290 26 0 25 chr1 88127257 88127297 -109068135 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 3 1257 381 22 0 0 chr1 88127316 88127362 -109068070 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1257 588 283 89 32 chr1 88127377 88127534 -109067898 - B3 SINE B2 -49 167 2 3 1257 909 243 46 60 chr1 88127816 88128101 -109067331 + B4 SINE B4 1 281 -11 3 1257 420 190 18 18 chr1 88128187 88128358 -109067074 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1257 272 104 14 43 chr1 88128393 88128463 -109066969 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1257 890 146 123 0 chr1 88129631 88129802 -109065630 + URR1A DNA MER1_type 35 226 0 3 1257 216 0 0 0 chr1 88130114 88130138 -109065294 + (G)n Simple_repeat Simple_repeat 1 24 0 3 1257 718 253 241 42 chr1 88131361 88131712 -109063720 + RMER5 LTR ERV1 11 431 -103 3 1257 515 240 93 39 chr1 88132185 88132308 -109063124 - Lx7 LINE L1 -4 7692 7556 3 1257 1164 68 0 26 chr1 88132308 88132459 -109062973 + B1_Mus1 SINE Alu 2 148 0 3 1257 515 240 93 39 chr1 88132459 88132539 -109062893 - Lx7 LINE L1 -141 7555 7478 3 1257 942 35 9 0 chr1 88132540 88132655 -109062777 + B1_Mm SINE Alu 32 147 0 3 1257 2006 231 72 60 chr1 88132659 88133344 -109062088 - Lx7 LINE L1 -174 7522 6830 3 1257 3421 123 71 81 chr1 88133362 88133941 -109061491 - L1_Mur3 LINE L1 -12 5868 5289 3 1257 946 173 0 0 chr1 88133941 88134091 -109061341 - B1_Mur4 SINE Alu 0 150 1 3 1257 3421 123 71 81 chr1 88134091 88134226 -109061206 - L1_Mur3 LINE L1 -592 5288 5161 3 1257 1222 54 0 0 chr1 88134781 88134928 -109060504 + B1_Mus2 SINE Alu 1 147 0 3 1257 261 0 0 0 chr1 88134929 88134958 -109060474 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1257 363 266 0 12 chr1 88134963 88135043 -109060389 + ID4_ SINE ID 2 80 -3 3 1257 295 303 89 20 chr1 88135043 88135144 -109060288 + PB1D10 SINE Alu 2 109 -8 3 1257 473 278 10 102 chr1 88135160 88135356 -109060076 + B3A SINE B2 1 178 -20 3 1257 426 310 115 52 chr1 88137129 88137398 -109058034 - ORR1E LTR MaLR -52 307 22 3 1257 343 240 212 33 chr1 88137802 88137953 -109057479 + MER2 DNA MER2_type 1 178 -167 3 1257 307 295 154 27 chr1 88137980 88138097 -109057335 + AluG_3 SINE Alu 1 223 -88 3 1257 346 268 109 17 chr1 88138110 88138285 -109057147 - L1MDa LINE L1 -1303 5234 5044 3 1257 529 154 77 60 chr1 88138368 88138485 -109056947 - B1F1 SINE Alu -1 148 30 3 1257 330 321 178 40 chr1 88138594 88138993 -109056439 - L1MDa LINE L1 -5956 677 224 3 1257 301 284 104 10 chr1 88139007 88139103 -109056329 - L1MDa LINE L1 -6465 168 64 3 1257 342 0 0 0 chr1 88139499 88139537 -109055895 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1257 583 295 55 52 chr1 88139548 88139820 -109055612 - B4A SINE B4 -18 274 2 3 1257 4951 112 20 15 chr1 88140208 88140957 -109054475 - RMER6A LTR ERVK -3 753 1 3 1257 198 316 90 26 chr1 88141641 88141797 -109053635 - L2 LINE L2 -1228 2191 2026 3 1257 733 249 135 0 chr1 88142629 88142814 -109052618 + ID_B1 SINE B4 8 217 -7 3 1257 21 0 0 0 chr1 88142814 88142835 -109052597 + AT_rich Low_complexity Low_complexity 1 21 0 3 1257 990 280 96 39 chr1 88143766 88144152 -109051280 - MLT1C LTR MaLR -8 459 52 3 1257 288 0 0 0 chr1 88144157 88144189 -109051243 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1257 438 249 61 128 chr1 88144464 88144644 -109050788 - MTEb LTR MaLR 0 379 212 3 1257 1067 155 184 25 chr1 88144893 88145137 -109050295 - ORR1C2 LTR MaLR 0 384 102 3 1257 518 290 165 92 chr1 88145027 88145346 -109050086 + RMER5 LTR ERV1 24 338 -196 3 1257 270 0 0 0 chr1 88145346 88145376 -109050056 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 3 1257 518 290 165 92 chr1 88145376 88145523 -109049909 + RMER5 LTR ERV1 339 524 -10 3 1257 881 235 81 12 chr1 88145599 88145845 -109049587 - MER34 LTR ERV1 -279 263 1 3 1257 241 221 83 104 chr1 88145850 88145946 -109049486 + Tigger12 DNA MER2_type 738 831 -1128 3 1257 312 305 57 48 chr1 88145882 88146006 -109049426 - Arthur1 DNA Tip100 -3755 192 68 3 1257 249 33 0 0 chr1 88146371 88146401 -109049031 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 3 1257 651 259 12 30 chr1 88146438 88146605 -109048827 - RSINE1 SINE B4 -1 164 1 3 1257 463 250 0 0 chr1 88146626 88146714 -109048718 + PB1D10 SINE Alu 4 91 -26 3 1257 288 286 39 48 chr1 88146753 88146856 -109048576 + ID4 SINE ID 2 103 -49 3 1257 458 264 0 0 chr1 88146933 88147043 -109048389 - PB1D10 SINE Alu -6 111 2 3 1257 233 219 40 169 chr1 88147581 88147729 -109047703 - B1F SINE Alu -20 129 1 3 1257 399 145 0 0 chr1 88147746 88147815 -109047617 + (TCC)n Simple_repeat Simple_repeat 2 70 0 3 1257 186 240 0 0 chr1 88148096 88148146 -109047286 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1257 580 335 57 44 chr1 88148149 88148377 -109047055 - B4A SINE B4 -4 288 58 3 1257 234 188 14 28 chr1 88148408 88148479 -109046953 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 3 1257 839 168 6 57 chr1 88148479 88148637 -109046795 - B1_Mur4 SINE Alu 0 150 1 3 1257 300 132 148 99 chr1 88148641 88148742 -109046690 - PB1D7 SINE Alu -1 119 14 3 1257 288 171 0 0 chr1 88149371 88149430 -109046002 + ID4 SINE ID 40 98 -54 3 1257 484 188 50 0 chr1 88150770 88150882 -109044550 - PB1D7 SINE Alu 0 120 2 3 1257 236 272 40 80 chr1 88150882 88150925 -109044507 - B4A SINE B4 -204 88 50 3 1257 595 198 99 0 chr1 88151541 88151662 -109043770 - B1_Mur2 SINE Alu -5 144 12 3 1257 357 269 79 71 chr1 88151542 88151664 -109043768 - B4 SINE B4 -72 220 95 3 1257 589 186 225 6 chr1 88151664 88151837 -109043595 - ID_B1 SINE B4 -11 213 3 3 1257 357 269 79 71 chr1 88151837 88151854 -109043578 - B4 SINE B4 -198 94 81 3 1257 534 70 0 0 chr1 88152870 88152941 -109042491 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1257 451 198 115 0 chr1 88153299 88153395 -109042037 + ID_B1 SINE B4 118 224 0 3 1257 653 187 88 61 chr1 88153430 88153578 -109041854 + RSINE1 SINE B4 14 165 0 3 1257 225 0 0 0 chr1 88153591 88153616 -109041816 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1257 1064 222 22 5 chr1 88154288 88154524 -109040908 - B4A SINE B4 -41 251 1 3 1257 225 255 0 0 chr1 88155566 88155617 -109039815 - ID4 SINE ID -32 51 1 3 1257 507 252 20 40 chr1 88156095 88156244 -109039188 + B1F2 SINE Alu 2 147 -2 3 1257 981 261 79 84 chr1 88156359 88156477 -109038955 - MTE2a LTR MaLR -19 360 266 3 1257 1357 71 11 21 chr1 88156477 88156665 -109038767 + B2_Mm1t SINE B2 2 187 -6 3 1257 981 256 83 91 chr1 88156665 88156920 -109038512 - MTE2a LTR MaLR -114 265 3 3 1257 649 177 120 8 chr1 88156921 88157046 -109038386 + B1_Mur1 SINE Alu 1 139 -10 3 1257 521 217 85 8 chr1 88157091 88157221 -109038211 + B3A SINE B2 59 198 0 3 1257 296 219 69 95 chr1 88157715 88157831 -109037601 + MT2B LTR ERVL 152 264 -337 3 1257 740 93 68 0 chr1 88157733 88157851 -109037581 + B1_Mur3 SINE Alu 9 134 -15 3 1257 234 91 0 0 chr1 88157874 88157907 -109037525 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 3 1257 229 261 31 0 chr1 88158244 88158309 -109037123 + MER53 DNA hAT 1 67 -126 3 1257 767 143 0 0 chr1 88158843 88158955 -109036477 - B1_Mur4 SINE Alu -6 144 33 3 1257 245 86 0 65 chr1 88159152 88159214 -109036218 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 3 1257 431 274 0 0 chr1 88159317 88159412 -109036020 + PB1D10 SINE Alu 2 96 -21 3 1257 237 211 0 0 chr1 88159438 88159490 -109035942 + GA-rich Low_complexity Low_complexity 1 52 0 3 1257 562 259 46 39 chr1 88161196 88161349 -109034083 - RSINE1 SINE B4 -9 156 3 3 1257 307 151 27 0 chr1 88161438 88161500 -109033932 + PB1D10 SINE Alu 62 149 0 3 1257 354 222 286 0 chr1 88161502 88161628 -109033804 + RSINE1 SINE B4 2 163 -2 3 1257 30 0 0 0 chr1 88162018 88162048 -109033384 + AT_rich Low_complexity Low_complexity 1 30 0 3 1257 425 337 59 55 chr1 88162090 88162363 -109033069 - B4A SINE B4 -18 274 1 3 1257 552 259 34 34 chr1 88162366 88162514 -109032918 - B1F1 SINE Alu -1 148 1 3 1257 1256 54 0 0 chr1 88162535 88162682 -109032750 + B1_Mm SINE Alu 1 147 0 3 1257 918 184 0 0 chr1 88162684 88162863 -109032569 + GA-rich Low_complexity Low_complexity 2 180 0 3 1257 263 50 0 48 chr1 88162865 88162907 -109032525 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 3 1257 211 191 24 0 chr1 88162952 88162994 -109032438 + B4 SINE B4 98 140 -152 3 1257 215 194 0 0 chr1 88162959 88162995 -109032437 + B1F2 SINE Alu 21 56 -93 3 1257 763 267 41 110 chr1 88163016 88163306 -109032126 + B4A SINE B4 2 271 -21 3 1257 380 325 46 96 chr1 88163323 88163541 -109031891 - RMER12 LTR ERVK -407 915 709 3 1257 263 336 53 8 chr1 88163537 88163560 -109031872 - B4A SINE B4 -68 224 87 3 1257 437 275 9 0 chr1 88163560 88163669 -109031763 - PB1D7 SINE Alu -9 111 2 3 1257 790 218 0 26 chr1 88163760 88163911 -109031521 - B1_Mur1 SINE Alu 0 149 3 3 1257 252 217 0 0 chr1 88163947 88163993 -109031439 + B3A SINE B2 1 46 -152 3 1257 1352 288 64 24 chr1 88163998 88164497 -109030935 - RMER5 LTR ERV1 -11 523 5 3 1257 375 232 61 26 chr1 88164509 88164603 -109030829 + B3 SINE B2 70 167 -49 3 1257 333 0 0 0 chr1 88164603 88164640 -109030792 + (CATA)n Simple_repeat Simple_repeat 4 40 0 3 1257 375 232 61 26 chr1 88164640 88164660 -109030772 + B3 SINE B2 168 188 -28 3 1257 592 236 18 0 chr1 88164686 88164796 -109030636 + PB1D9 SINE Alu 4 115 -5 4 1257 817 110 0 0 chr1 88164912 88165021 -109030411 - B1_Mur3 SINE Alu -40 109 1 4 1257 464 194 0 112 chr1 88164917 88165033 -109030399 - MT2B LTR ERVL -344 257 155 4 1257 1329 82 44 0 chr1 88165052 88165235 -109030197 - B2_Mm2 SINE B2 0 195 5 4 1257 1304 62 48 43 chr1 88167038 88167224 -109028208 + B2_Mm2 SINE B2 1 187 -8 4 1257 211 231 0 19 chr1 88167256 88167309 -109028123 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 4 1257 21 36 0 0 chr1 88167375 88167403 -109028029 + AT_rich Low_complexity Low_complexity 1 28 0 4 1257 876 176 14 7 chr1 88167500 88167643 -109027789 - B1_Mur1 SINE Alu -5 144 1 4 1257 803 206 68 32 chr1 88167650 88167840 -109027592 - B3A SINE B2 -1 197 1 4 1257 205 293 137 8 chr1 88168458 88168582 -109026850 + MIRb SINE MIR 55 194 -74 4 1257 3183 42 39 3 chr1 88169495 88169877 -109025555 - MTA_Mm LTR MaLR 0 396 1 4 1257 317 252 74 7 chr1 88170038 88170148 -109025284 + RSINE1 SINE B4 2 117 -175 4 1257 839 177 0 28 chr1 88170182 88170327 -109025105 + B1_Mur2 SINE Alu 5 145 -4 4 1257 773 232 70 11 chr1 88170488 88170675 -109024757 + B3A SINE B2 1 198 0 4 1257 216 0 0 0 chr1 88170689 88170713 -109024719 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1257 969 132 0 20 chr1 88170714 88170861 -109024571 + B1_Mur3 SINE Alu 2 145 -4 4 1257 23 0 0 0 chr1 88170862 88170885 -109024547 + AT_rich Low_complexity Low_complexity 1 23 0 4 1257 215 253 165 24 chr1 88171373 88171458 -109023974 - B1_Mur1 SINE Alu 0 149 53 4 1257 1004 138 176 21 chr1 88172732 88172925 -109022507 + URR1A DNA MER1_type 2 224 -2 4 1257 339 258 183 16 chr1 88173060 88173240 -109022192 + ID_B1 SINE B4 10 219 -5 4 1257 975 197 88 0 chr1 88173326 88173519 -109021913 - B3 SINE B2 -5 211 2 4 1257 385 202 104 21 chr1 88174149 88174245 -109021187 - B1_Mur1 SINE Alu -3 146 43 4 1257 283 206 88 0 chr1 88174268 88174336 -109021096 + B3A SINE B2 1 74 -124 4 1257 603 150 18 45 chr1 88174516 88174628 -109020804 - B1_Mur3 SINE Alu 0 149 41 4 1257 229 279 0 68 chr1 88174566 88174639 -109020793 - RLTR25B LTR ERVK -530 498 431 4 1257 399 0 135 0 chr1 88174643 88174754 -109020678 + (CCTG)n Simple_repeat Simple_repeat 3 128 0 4 1257 241 237 0 33 chr1 88174776 88174837 -109020595 - B1_Mus1 SINE Alu -88 60 2 4 1257 256 311 100 68 chr1 88174855 88174923 -109020509 - B3A SINE B2 0 198 3 4 1257 464 246 16 33 chr1 88174923 88175045 -109020387 - RSINE1 SINE B4 -42 123 4 4 1257 757 223 7 0 chr1 88175080 88175219 -109020213 + B1_Mur1 SINE Alu 1 140 -9 4 1257 669 206 50 29 chr1 88175439 88175462 -109019970 - B1_Mus1 SINE Alu -5 143 118 4 1257 633 14 0 0 chr1 88175462 88175536 -109019896 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1257 669 206 50 29 chr1 88175536 88175652 -109019780 - B1_Mus1 SINE Alu -31 117 2 4 1257 654 142 92 0 chr1 88175907 88176027 -109019405 - B1_Mur1 SINE Alu 0 149 19 4 1257 1089 90 0 0 chr1 88176095 88176229 -109019203 - B1_Mus1 SINE Alu -13 135 2 4 1257 385 284 51 17 chr1 88176372 88176490 -109018942 + MER96B DNA hAT 296 417 0 4 1257 239 275 66 99 chr1 88176630 88176751 -109018681 - MLT1H2 LTR MaLR -52 497 381 4 1257 322 247 106 0 chr1 88176879 88176964 -109018468 - MLT1H2 LTR MaLR -325 164 71 4 1257 440 45 30 0 chr1 88177101 88177167 -109018265 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 4 1257 329 276 57 6 chr1 88177170 88177345 -109018087 + B4 SINE B4 9 225 -67 4 1257 480 77 0 0 chr1 88177347 88177412 -109018020 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1257 301 335 90 30 chr1 88177412 88177550 -109017882 + HAL1-3A_ME LINE L1 2286 2439 -419 4 1257 728 176 29 7 chr1 88177550 88177687 -109017745 + B1_Mur3 SINE Alu 5 144 -5 4 1257 301 335 90 30 chr1 88177687 88177748 -109017684 + HAL1-3A_ME LINE L1 2440 2496 -362 4 1257 464 237 160 0 chr1 88177841 88177972 -109017460 + B3A SINE B2 1 152 -46 4 1257 566 99 11 0 chr1 88177977 88178068 -109017364 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1257 243 305 52 10 chr1 88178407 88178503 -109016929 + MER63D DNA AcHobo 50 149 -912 4 1257 1070 209 46 0 chr1 88178504 88178700 -109016732 + B3 SINE B2 1 205 -11 4 1257 575 250 36 0 chr1 88178736 88178848 -109016584 + ID_B1 SINE B4 51 166 -58 4 1257 1321 193 29 144 chr1 88179201 88179269 -109016163 - ORR1C2 LTR MaLR 0 384 328 4 1257 1569 32 16 0 chr1 88179269 88179455 -109015977 + B2_Mm1t SINE B2 2 190 -3 4 1257 1321 193 29 144 chr1 88179455 88179797 -109015635 - ORR1C2 LTR MaLR -57 327 21 4 1257 204 48 47 23 chr1 88179818 88179861 -109015571 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1257 778 182 0 0 chr1 88180346 88180467 -109014965 - B1_Mur4 SINE Alu -21 129 9 4 1257 1609 27 16 0 chr1 88180501 88180688 -109014744 + B2_Mm1a SINE B2 2 191 -2 4 1257 615 237 84 28 chr1 88181924 88182067 -109013365 - RSINE1 SINE B4 -11 154 4 4 1257 198 0 0 0 chr1 88182246 88182268 -109013164 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1257 21 0 0 0 chr1 88182492 88182513 -109012919 + AT_rich Low_complexity Low_complexity 1 21 0 4 1257 252 0 0 0 chr1 88182847 88182875 -109012557 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1257 1155 88 0 7 chr1 88182875 88183014 -109012418 - B1_Mus1 SINE Alu -9 139 1 4 1257 420 276 19 28 chr1 88183016 88183124 -109012308 - PB1D9 SINE Alu -4 116 10 4 1257 322 294 0 144 chr1 88183508 88183529 -109011903 - MT2B LTR ERVL -307 294 275 4 1257 459 0 0 0 chr1 88183529 88183580 -109011852 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1257 322 294 0 144 chr1 88183580 88183697 -109011735 - MT2B LTR ERVL -327 274 177 4 1257 663 176 25 42 chr1 88183585 88183704 -109011728 - B1_Mur1 SINE Alu -31 118 2 4 1257 377 289 62 55 chr1 88183594 88183722 -109011710 - B4 SINE B4 -94 198 70 4 1257 307 292 172 55 chr1 88183747 88183892 -109011540 - RSINE1 SINE B4 0 165 4 4 1257 441 281 48 52 chr1 88183903 88184113 -109011319 - L1MA5 LINE L1 -6 6294 6086 4 1257 288 0 0 0 chr1 88184452 88184484 -109010948 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4 1257 481 247 38 12 chr1 88184484 88184594 -109010838 - B1_Mus2 SINE Alu -9 140 40 4 1257 231 173 0 0 chr1 88184595 88184647 -109010785 + C-rich Low_complexity Low_complexity 1 52 0 4 1257 226 294 83 0 chr1 88184700 88184809 -109010623 - L1M5 LINE L1 -294 5885 5768 4 1257 192 40 0 0 chr1 88184920 88184945 -109010487 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 4 1257 384 242 174 8 chr1 88185016 88185137 -109010295 + B1F1 SINE Alu 2 142 -7 4 1257 474 224 154 8 chr1 88185145 88185262 -109010170 + B1F1 SINE Alu 6 139 -10 4 1257 331 235 107 50 chr1 88185280 88185401 -109010031 + RSINE1 SINE B4 30 157 -8 4 1257 322 284 121 48 chr1 88185600 88185807 -109009625 - ID_B1 SINE B4 0 224 3 4 1257 1525 49 11 0 chr1 88185879 88186064 -109009368 + B2_Mm1t SINE B2 2 188 -5 4 1257 323 254 55 81 chr1 88186105 88186159 -109009273 - B3A SINE B2 -78 117 56 4 1257 4342 90 21 31 chr1 88186159 88186780 -109008652 - L1_Mus3 LINE L1 0 6638 6024 4 1257 323 227 12 96 chr1 88186780 88186834 -109008598 - B3A SINE B2 -143 55 5 4 1257 537 144 0 0 chr1 88186877 88186967 -109008465 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1257 469 214 12 0 chr1 88186971 88187067 -109008365 - B1_Mur3 SINE Alu -21 99 3 4 1257 301 263 210 42 chr1 88187076 88187219 -109008213 - L1MC LINE L1 -893 5253 5087 4 1257 283 247 111 11 chr1 88187375 88187402 -109008030 - BC1_Mm scRNA scRNA -53 99 1 4 1257 296 270 16 0 chr1 88187402 88187465 -109007967 - ID SINE ID -160 64 1 4 1257 186 43 0 0 chr1 88187729 88187752 -109007680 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 4 1257 737 228 25 91 chr1 88187754 88187952 -109007480 - B3A SINE B2 -13 185 1 4 1257 386 211 189 0 chr1 88187979 88188074 -109007358 - ID_B1 SINE B4 -3 221 109 4 1257 228 170 56 19 chr1 88188093 88188147 -109007285 + C-rich Low_complexity Low_complexity 4 59 0 4 1257 207 0 0 0 chr1 88188357 88188380 -109007052 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 4 1257 1109 68 0 0 chr1 88188380 88188513 -109006919 - B1_Mus2 SINE Alu -13 134 2 4 1257 362 0 0 59 chr1 88189248 88189299 -109006133 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1257 1079 75 0 0 chr1 88189299 88189432 -109006000 - B1_Mus2 SINE Alu -13 134 2 4 1257 1206 188 14 23 chr1 88189444 88189662 -109005770 - B3 SINE B2 0 216 1 4 1257 531 280 32 0 chr1 88189886 88190011 -109005421 + RSINE1 SINE B4 19 147 -18 4 1257 438 20 0 0 chr1 88190013 88190064 -109005368 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1257 930 139 27 20 chr1 88190090 88190237 -109005195 - B1_Mur4 SINE Alu 0 150 3 4 1257 890 107 107 96 chr1 88190268 88190455 -109004977 + B2_Mm2 SINE B2 2 190 -5 4 1257 262 259 67 56 chr1 88190809 88190899 -109004533 + MIRc SINE MIR 115 205 -63 4 1257 216 0 0 0 chr1 88190953 88190977 -109004455 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 4 1257 1475 74 5 0 chr1 88192199 88192388 -109003044 - B2_Mm1a SINE B2 -3 190 1 4 1257 183 176 55 73 chr1 88192900 88192955 -109002477 - MER5A DNA MER1_type -35 154 101 4 1257 1123 65 0 28 chr1 88192999 88193141 -109002291 + B1_Mus2 SINE Alu 1 138 -9 4 1257 230 0 33 0 chr1 88193141 88193171 -109002261 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1257 570 88 86 128 chr1 88193198 88193315 -109002117 + B1_Mus1 SINE Alu 30 141 -7 4 1257 1087 85 0 47 chr1 88193703 88193851 -109001581 + B1_Mus1 SINE Alu 2 142 -6 5 1257 315 0 0 0 chr1 88193853 88193888 -109001544 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1257 208 274 0 0 chr1 88195674 88195725 -108999707 + C-rich Low_complexity Low_complexity 3 53 0 5 1257 677 106 37 15 chr1 88195809 88195943 -108999489 + (CATA)n Simple_repeat Simple_repeat 2 138 0 5 1257 207 0 0 0 chr1 88196222 88196245 -108999187 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1257 867 96 0 100 chr1 88196245 88196395 -108999037 - B1_Mus1 SINE Alu -8 140 6 5 1257 1150 101 0 6 chr1 88196371 88196530 -108998902 - B2_Mm2 SINE B2 -36 159 2 5 1257 451 255 18 18 chr1 88198264 88198376 -108997056 + PB1D10 SINE Alu 2 113 -4 5 1257 621 175 133 16 chr1 88199304 88199432 -108996000 - B1_Mur1 SINE Alu 0 149 7 5 1257 225 280 173 27 chr1 88201846 88201956 -108993476 - Looper DNA PiggyBac -238 1320 1195 5 1257 185 188 0 77 chr1 88203751 88203803 -108991629 - L4 LINE RTE -815 1214 1167 5 1257 263 274 116 23 chr1 88204369 88204455 -108990977 - MER45A DNA Tip100 -5 173 80 5 1257 216 0 0 0 chr1 88205257 88205281 -108990151 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1257 401 224 77 58 chr1 88206449 88206553 -108988879 - ID_B1 SINE B4 -117 107 2 5 1257 1384 89 10 10 chr1 88206573 88206765 -108988667 + B2_Mm2 SINE B2 2 193 -2 5 1257 503 268 16 8 chr1 88208104 88208228 -108987204 - RSINE1 SINE B4 -39 126 2 5 1257 298 98 16 74 chr1 88208653 88208724 -108986708 + T-rich Low_complexity Low_complexity 52 115 0 5 1257 1284 41 0 0 chr1 88208724 88208871 -108986561 - B1_Mus2 SINE Alu 0 147 1 5 1257 298 98 16 74 chr1 88208871 88208920 -108986512 + T-rich Low_complexity Low_complexity 3 51 0 5 1257 575 238 34 34 chr1 88209156 88209304 -108986128 + B1_Mur1 SINE Alu 1 148 -1 5 1257 318 93 0 0 chr1 88209474 88209517 -108985915 + B2_Mm2 SINE B2 1 43 -152 5 1257 420 79 16 0 chr1 88209515 88209578 -108985854 + B1_Mm SINE Alu 84 147 0 5 1257 1102 69 21 0 chr1 88209847 88209992 -108985440 + B1_Mus1 SINE Alu 1 148 0 5 1257 370 286 0 12 chr1 88210816 88210901 -108984531 + B1F1 SINE Alu 8 91 -58 5 1257 189 0 0 0 chr1 88210907 88210928 -108984504 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1257 522 0 0 0 chr1 88211018 88211076 -108984356 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1258 836 204 124 0 chr1 88211563 88211749 -108983683 + B3 SINE B2 1 209 -7 5 1258 972 182 94 0 chr1 88211781 88211973 -108983459 - B3 SINE B2 -6 210 1 5 1258 445 319 33 16 chr1 88211999 88212120 -108983312 + ID_B1 SINE B4 84 206 -18 5 1258 347 280 36 157 chr1 88212120 88212138 -108983294 + B1_Mus2 SINE Alu 3 124 -23 5 1258 884 199 60 0 chr1 88212170 88212336 -108983096 + B3 SINE B2 5 180 -36 5 1258 405 330 96 25 chr1 88212309 88212339 -108983093 + B4A SINE B4 28 52 -240 5 1258 481 237 105 0 chr1 88212339 88212453 -108982979 + B1_Mur2 SINE Alu 5 130 -19 5 1258 405 330 96 25 chr1 88212453 88212661 -108982771 + B4A SINE B4 53 283 -9 5 1258 1258 97 36 36 chr1 88212735 88212891 -108982541 + B2_Mm1a SINE B2 1 163 -30 5 1258 370 18 17 50 chr1 88212891 88212951 -108982481 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 5 1258 1258 97 36 36 chr1 88212951 88212986 -108982446 + B2_Mm1a SINE B2 164 192 -1 5 1258 300 354 71 0 chr1 88213456 88213555 -108981877 + B4A SINE B4 18 123 -169 5 1258 723 140 100 8 chr1 88213834 88213964 -108981468 + B3 SINE B2 67 208 -8 5 1258 2169 102 26 250 chr1 88214068 88214680 -108980752 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1258 5763 50 5 12 chr1 88214682 88215431 -108980001 - IAPEz-int LTR ERVK -2 6479 5736 5 1258 2124 72 0 0 chr1 88215430 88215708 -108979724 - IAPEz-int LTR ERVK -4845 1636 1359 5 1258 3284 57 27 20 chr1 88215708 88216157 -108979275 - IAPEz-int LTR ERVK -5819 662 211 5 1258 1131 168 45 64 chr1 88216157 88216424 -108979008 - IAPEz-int LTR ERVK -6052 429 168 5 1258 230 321 0 0 chr1 88216424 88216477 -108978955 - RLTR27 LTR ERVK -34 275 223 5 1258 231 327 0 0 chr1 88216505 88216560 -108978872 - RLTR27 LTR ERVK -34 275 221 5 1258 230 321 0 0 chr1 88216586 88216639 -108978793 - RLTR27 LTR ERVK -34 275 223 5 1258 988 87 26 108 chr1 88216639 88216833 -108978599 - IAPEz-int LTR ERVK -6286 195 18 5 1258 204 40 0 0 chr1 88216833 88216858 -108978574 + (TCCCG)n Simple_repeat Simple_repeat 1 25 0 5 1258 2150 110 21 245 chr1 88216893 88217505 -108977927 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1258 344 252 44 95 chr1 88217812 88217970 -108977462 - HAL1-3A_ME LINE L1 -734 2124 1975 5 1258 633 153 52 12 chr1 88217988 88218160 -108977272 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 5 1258 259 241 17 0 chr1 88218160 88218218 -108977214 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 1258 21 0 0 0 chr1 88218444 88218465 -108976967 + AT_rich Low_complexity Low_complexity 1 21 0 5 1258 353 238 10 0 chr1 88218539 88218640 -108976792 + (TGG)n Simple_repeat Simple_repeat 1 102 0 5 1258 1479 265 87 28 chr1 88218680 88219150 -108976282 - RMER20A LTR ERVK -6 510 13 5 1258 263 207 101 37 chr1 88219166 88219283 -108976149 + B3 SINE B2 65 197 -1 5 1258 572 237 45 19 chr1 88219362 88219521 -108975911 + B3A SINE B2 1 165 -30 5 1258 206 62 31 0 chr1 88219521 88219553 -108975879 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1258 355 279 76 70 chr1 88219553 88219578 -108975854 + B2_Mm2 SINE B2 166 186 -9 5 1258 1285 99 71 0 chr1 88219609 88219791 -108975641 + B2_Mm2 SINE B2 1 195 0 5 1258 279 0 0 0 chr1 88220214 88220245 -108975187 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1258 1247 41 0 20 chr1 88220448 88220598 -108974834 + B1_Mm SINE Alu 1 147 0 5 1258 29 0 0 0 chr1 88220598 88220627 -108974805 + AT_rich Low_complexity Low_complexity 1 29 0 5 1258 221 154 26 0 chr1 88220689 88220728 -108974704 + CT-rich Low_complexity Low_complexity 1 40 0 5 1258 926 136 0 48 chr1 88221003 88221150 -108974282 + B1_Mus1 SINE Alu 2 141 -7 5 1258 400 252 319 13 chr1 88221153 88221382 -108974050 - RMER5 LTR ERV1 -13 521 223 5 1258 370 311 32 24 chr1 88221395 88221520 -108973912 - RMER5 LTR ERV1 -352 182 57 5 1258 1493 72 5 5 chr1 88221539 88221734 -108973698 - B2_Mm2 SINE B2 0 195 1 5 1258 1149 75 0 7 chr1 88222170 88222317 -108973115 - B1_Mus2 SINE Alu 0 147 2 5 1258 492 269 142 56 chr1 88222522 88222719 -108972713 + ID_B1 SINE B4 7 220 -4 5 1258 228 259 16 65 chr1 88222724 88222786 -108972646 + B3 SINE B2 1 59 -157 5 1258 226 250 26 0 chr1 88222857 88222933 -108972499 + L1ME2z LINE L1 5895 5972 -472 5 1258 691 245 0 14 chr1 88223204 88223349 -108972083 + RSINE1 SINE B4 3 145 -20 5 1258 387 0 0 0 chr1 88223350 88223393 -108972039 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1258 549 0 0 0 chr1 88223412 88223473 -108971959 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 1258 852 73 0 0 chr1 88223485 88223595 -108971837 + B1_Mus1 SINE Alu 39 148 0 5 1258 338 255 43 130 chr1 88223490 88223652 -108971780 + B4 SINE B4 128 275 -17 5 1258 545 259 82 49 chr1 88223732 88223801 -108971631 + ID SINE ID 1 75 -149 5 1258 563 190 69 49 chr1 88223801 88223945 -108971487 + B1F1 SINE Alu 1 147 -2 5 1258 482 152 11 0 chr1 88223964 88224056 -108971376 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 1258 22 0 0 0 chr1 88224137 88224159 -108971273 + AT_rich Low_complexity Low_complexity 1 22 0 5 1258 393 283 37 9 chr1 88224159 88224266 -108971166 - PB1D9 SINE Alu -5 115 6 5 1258 626 234 214 6 chr1 88224762 88224930 -108970502 + B3 SINE B2 1 203 -13 5 1258 1477 59 0 21 chr1 88224930 88225120 -108970312 - B2_Mm1a SINE B2 -7 186 1 5 1258 263 49 24 0 chr1 88225444 88225485 -108969947 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1258 1221 62 0 0 chr1 88225485 88225631 -108969801 - B1_Mus1 SINE Alu 0 148 3 5 1258 1391 77 17 0 chr1 88225807 88225988 -108969444 + B2_Mm2 SINE B2 1 184 -11 5 1258 1023 145 194 6 chr1 88226099 88226279 -108969153 - B3 SINE B2 -2 214 1 5 1258 423 0 0 0 chr1 88226286 88226333 -108969099 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1258 333 250 0 0 chr1 88226334 88226402 -108969030 - RSINE1 SINE B4 -41 124 57 5 1258 795 182 7 33 chr1 88226461 88226614 -108968818 - B1_Mur3 SINE Alu 0 149 1 5 1258 774 184 0 8 chr1 88226619 88226745 -108968687 - B1_Mus2 SINE Alu 0 147 23 5 1258 315 0 0 0 chr1 88226783 88226818 -108968614 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1258 858 90 143 0 chr1 88226824 88226957 -108968475 - B2_Mm2 SINE B2 -42 153 2 5 1258 859 177 199 6 chr1 88227087 88227263 -108968169 + B3 SINE B2 1 210 -6 5 1258 27 0 0 0 chr1 88227263 88227290 -108968142 + AT_rich Low_complexity Low_complexity 1 27 0 5 1258 1315 92 32 0 chr1 88227832 88228017 -108967415 - B2_Mm1t SINE B2 -2 191 1 5 1258 688 180 79 0 chr1 88228019 88228158 -108967274 - B1_Mur4 SINE Alu 0 150 1 5 1258 7012 67 24 8 chr1 88228245 88229159 -108966273 - RLTR13B3 LTR ERVK 0 929 1 5 1258 1657 32 0 0 chr1 88229305 88229495 -108965937 + B2_Mm1a SINE B2 2 191 -2 5 1258 1140 118 59 0 chr1 88229558 88229728 -108965704 + B2_Mm2 SINE B2 1 180 -15 5 1258 277 24 49 0 chr1 88229783 88229824 -108965608 + B2_Mm2 SINE B2 137 179 -16 5 1258 806 78 9 0 chr1 88229824 88229939 -108965493 + (GAA)n Simple_repeat Simple_repeat 1 116 0 5 1258 516 256 127 8 chr1 88229991 88230125 -108965307 + B3 SINE B2 1 150 -66 5 1258 354 61 0 0 chr1 88230144 88230193 -108965239 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1258 639 0 0 0 chr1 88230212 88230283 -108965149 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 5 1258 753 129 113 0 chr1 88230287 88230411 -108965021 - B1_Mur4 SINE Alu -1 149 12 5 1258 295 170 86 98 chr1 88230530 88230585 -108964847 - RMER17C LTR ERVK -135 275 220 5 1258 1229 128 32 0 chr1 88230585 88230773 -108964659 + B2_Mm2 SINE B2 1 194 -1 5 1258 295 170 86 98 chr1 88230773 88230880 -108964552 - RMER17C LTR ERVK -191 219 115 5 1258 260 315 30 80 chr1 88230883 88230938 -108964494 - B2_Mm2 SINE B2 -3 192 3 5 1258 764 241 35 0 chr1 88230938 88231083 -108964349 - RSINE1 SINE B4 -12 153 4 6 1258 640 243 113 23 chr1 88231426 88231603 -108963829 + B3A SINE B2 4 196 -2 6 1258 754 100 9 26 chr1 88231649 88231762 -108963670 - B1_Mur2 SINE Alu -27 122 12 6 1258 1004 174 6 6 chr1 88231830 88232003 -108963429 - B3 SINE B2 0 216 44 6 1258 375 23 0 0 chr1 88232038 88232082 -108963350 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1258 987 251 17 138 chr1 88232154 88232566 -108962866 + ORR1D2 LTR MaLR 5 366 -4 6 1258 754 137 41 68 chr1 88233005 88233070 -108962362 + RMER17C LTR ERVK 2 66 -344 6 1258 441 0 0 0 chr1 88233070 88233119 -108962313 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1258 754 154 69 98 chr1 88233119 88233367 -108962065 + RMER17C LTR ERVK 67 410 0 6 1258 594 168 27 10 chr1 88233791 88233900 -108961532 - PB1D9 SINE Alu 0 127 10 6 1258 547 244 35 0 chr1 88233893 88234008 -108961424 - B3 SINE B2 -79 137 19 6 1258 691 156 204 180 chr1 88234027 88234149 -108961283 - B3 SINE B2 0 216 62 6 1258 1135 55 0 14 chr1 88234149 88234296 -108961136 + B1_Mm SINE Alu 2 146 -1 6 1258 691 156 204 180 chr1 88234296 88234384 -108961048 - B3 SINE B2 -155 61 1 6 1258 772 230 7 0 chr1 88234387 88234535 -108960897 - B1_Mur1 SINE Alu 0 149 1 6 1258 504 0 0 0 chr1 88234556 88234612 -108960820 + (TAG)n Simple_repeat Simple_repeat 1 56 0 6 1258 201 133 0 0 chr1 88234614 88234644 -108960788 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1258 895 116 6 82 chr1 88234708 88234867 -108960565 - B1_Mus1 SINE Alu 0 148 2 6 1258 332 290 0 116 chr1 88235014 88235135 -108960297 - B4 SINE B4 -184 108 2 6 1258 1208 61 0 0 chr1 88235285 88235432 -108960000 - B1_Mm SINE Alu 0 147 1 6 1258 324 0 0 0 chr1 88235498 88235534 -108959898 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 6 1258 648 56 0 0 chr1 88235691 88235780 -108959652 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1258 223 286 143 0 chr1 88235881 88235972 -108959460 + ID_B1 SINE B4 4 107 -117 6 1258 331 261 71 9 chr1 88236431 88236543 -108958889 + MLT2B3 LTR ERVL 1 119 -435 6 1258 212 283 9 132 chr1 88236518 88236624 -108958808 - PB1D7 SINE Alu -27 93 1 6 1258 217 311 0 32 chr1 88236562 88236625 -108958807 - ID_B1 SINE B4 -83 141 81 6 1258 541 226 144 128 chr1 88236609 88236852 -108958580 + MER82 DNA MER2_type 145 391 -262 6 1258 1419 76 21 5 chr1 88236857 88237043 -108958389 + B2_Mm2 SINE B2 2 190 -5 6 1258 1145 62 7 20 chr1 88237047 88237196 -108958236 + B1_Mm SINE Alu 1 147 0 6 1258 242 56 28 0 chr1 88237196 88237232 -108958200 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1258 216 158 0 0 chr1 88237385 88237423 -108958009 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 6 1258 828 208 58 7 chr1 88237425 88237580 -108957852 - B3A SINE B2 -35 163 1 6 1258 995 104 136 30 chr1 88237598 88237767 -108957665 - B2_Mm1t SINE B2 -6 187 1 6 1258 833 120 130 18 chr1 88237774 88237943 -108957489 - B2_Mm2 SINE B2 -6 189 2 6 1258 1211 62 0 0 chr1 88237956 88238102 -108957330 - B1_Mus2 SINE Alu 0 147 2 6 1258 1730 182 67 0 chr1 88238131 88238444 -108956988 - MTC LTR MaLR -55 366 33 6 1258 654 82 0 0 chr1 88238432 88238517 -108956915 + MT2C_Mm LTR ERVL 27 111 -364 6 1258 3488 25 2 0 chr1 88238525 88238923 -108956509 - L1Md_F3 LINE L1 -3 6581 6183 6 1258 236 305 0 0 chr1 88238928 88238987 -108956445 + MER82 DNA MER2_type 592 650 -3 6 1258 395 293 27 58 chr1 88238994 88239201 -108956231 + ORR1E LTR MaLR 3 191 -183 6 1258 258 241 0 0 chr1 88239202 88239256 -108956176 - ID4_ SINE ID -28 55 2 6 1258 246 251 73 45 chr1 88239263 88239395 -108956037 - MLT2C2 LTR ERVL -41 515 396 6 1258 426 283 63 35 chr1 88239621 88239764 -108955668 - B1F1 SINE Alu -1 148 2 6 1258 712 275 126 28 chr1 88239800 88240047 -108955385 - B4A SINE B4 0 292 22 6 1258 729 161 17 4 chr1 88240260 88240389 -108955043 - B1_Mur4 SINE Alu -15 134 2 6 1258 339 224 26 13 chr1 88240414 88240491 -108954941 + B1_Mus1 SINE Alu 13 90 -58 6 1258 412 276 57 93 chr1 88240723 88240863 -108954569 - ID_B1 SINE B4 -76 148 14 6 1258 308 335 151 15 chr1 88241513 88241711 -108953721 + Charlie24 DNA MER1_type 1469 1694 -756 6 1258 816 61 113 0 chr1 88241711 88241826 -108953606 + B1_Mur4 SINE Alu 3 130 -20 6 1258 270 304 29 0 chr1 88241897 88241966 -108953466 - MTEa LTR MaLR -256 123 53 6 1258 1341 251 39 60 chr1 88241973 88242337 -108953095 + MTE2b LTR MaLR 18 373 -6 6 1258 717 191 8 31 chr1 88242407 88242537 -108952895 + B1_Mur2 SINE Alu 23 149 0 6 1258 475 237 202 22 chr1 88242838 88243015 -108952417 - B3 SINE B2 -10 206 18 6 1258 537 207 38 19 chr1 88243307 88243460 -108951972 + B3 SINE B2 25 183 -12 6 1258 331 310 72 36 chr1 88243466 88243557 -108951875 + L1MEb LINE L1 1040 1126 -5183 6 1258 586 227 162 0 chr1 88243557 88243647 -108951785 + B3 SINE B2 2 105 -111 6 1258 1377 85 27 0 chr1 88243647 88243835 -108951597 + B2_Mm2 SINE B2 3 195 0 6 1258 586 227 162 0 chr1 88243835 88243929 -108951503 + B3 SINE B2 106 215 -1 6 1258 331 272 48 24 chr1 88243929 88244043 -108951389 + L1MEb LINE L1 1098 1239 -5070 6 1258 270 316 95 0 chr1 88244142 88244237 -108951195 + PB1D10 SINE Alu 9 112 -5 6 1258 877 104 90 0 chr1 88244268 88244402 -108951030 - B1_Mus1 SINE Alu -1 147 2 6 1258 404 320 69 34 chr1 88244402 88244451 -108950981 - B4 SINE B4 -195 97 43 6 1258 509 168 189 16 chr1 88244477 88244604 -108950828 + B1_Mur2 SINE Alu 1 149 0 6 1258 1109 74 7 20 chr1 88245256 88245407 -108950025 - B1_Mur3 SINE Alu 0 149 1 6 1258 212 222 73 18 chr1 88245761 88245816 -108949616 - B1_Mus2 SINE Alu -18 129 72 6 1258 401 242 147 8 chr1 88246370 88246499 -108948933 - B1_Mus1 SINE Alu -1 147 1 6 1258 676 140 84 42 chr1 88246563 88246705 -108948727 - B1_Mus1 SINE Alu 0 148 1 6 1258 252 268 0 0 chr1 88247394 88247476 -108947956 + CT-rich Low_complexity Low_complexity 2 83 0 6 1258 26 0 0 0 chr1 88248148 88248174 -108947258 + AT_rich Low_complexity Low_complexity 1 26 0 6 1258 374 150 157 39 chr1 88248203 88248231 -108947201 - B3 SINE B2 -83 112 91 6 1258 1073 75 0 0 chr1 88248231 88248365 -108947067 + B1_Mus1 SINE Alu 5 138 -10 6 1258 374 132 165 24 chr1 88248365 88248432 -108947000 - B3 SINE B2 -126 90 10 6 1258 363 256 183 15 chr1 88250543 88250674 -108944758 + B3 SINE B2 2 154 -62 6 1258 879 70 136 23 chr1 88250924 88251056 -108944376 + B1_Mus1 SINE Alu 1 147 -1 6 1258 210 265 20 0 chr1 88251075 88251124 -108944308 + ID4_ SINE ID 34 83 0 6 1258 974 50 0 0 chr1 88251243 88251364 -108944068 - B1_Mus1 SINE Alu -5 143 23 6 1258 602 230 116 53 chr1 88251364 88251448 -108943984 - ID_B1 SINE B4 -3 219 2 6 1258 1155 137 11 0 chr1 88251857 88252032 -108943400 + B2_Mm1t SINE B2 3 179 -14 6 1258 294 109 373 44 chr1 88252069 88252179 -108943253 + B2_Mm2 SINE B2 49 194 -1 6 1258 300 200 0 0 chr1 88253132 88253227 -108942205 + CT-rich Low_complexity Low_complexity 2 96 0 6 1258 234 169 0 0 chr1 88253527 88253592 -108941840 + (CAT)n Simple_repeat Simple_repeat 3 67 0 6 1258 228 188 0 0 chr1 88253659 88253728 -108941704 + (CAT)n Simple_repeat Simple_repeat 3 71 0 6 1258 372 269 213 17 chr1 88254145 88254319 -108941113 + B3 SINE B2 2 209 -7 6 1258 297 211 40 53 chr1 88254413 88254488 -108940944 - PB1D9 SINE Alu -8 112 39 6 1258 531 112 0 0 chr1 88254509 88254589 -108940843 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 6 1258 252 0 0 0 chr1 88255055 88255083 -108940349 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1258 248 255 125 6 chr1 88256811 88256899 -108938533 - B1_Mur2 SINE Alu -10 139 43 6 1258 771 170 44 0 chr1 88256910 88257045 -108938387 - B1_Mus2 SINE Alu -6 141 1 6 1258 225 316 25 12 chr1 88257616 88257696 -108937736 + L2a LINE L2 3345 3425 -1 6 1258 528 235 121 64 chr1 88257815 88257988 -108937444 + B4A SINE B4 61 243 -49 6 1258 1212 127 102 0 chr1 88258156 88258361 -108937071 + URR1A DNA MER1_type 1 226 0 6 1258 338 240 90 0 chr1 88258491 88258591 -108936841 - PB1D10 SINE Alu 0 117 9 6 1258 579 248 105 0 chr1 88258514 88258667 -108936765 - ID_B1 SINE B4 -54 170 2 6 1258 779 269 32 92 chr1 88258667 88258905 -108936527 - B4A SINE B4 -59 233 11 6 1258 879 110 161 0 chr1 88259065 88259220 -108936212 + MTB_Mm LTR MaLR 3 182 -225 6 1258 471 257 35 79 chr1 88259360 88259474 -108935958 + B1F SINE Alu 1 109 -40 6 1258 228 333 114 0 chr1 88259517 88259622 -108935810 + PB1D10 SINE Alu 1 117 0 6 1258 323 195 174 45 chr1 88260199 88260307 -108935125 + PB1D9 SINE Alu 11 148 -1 6 1258 978 83 124 0 chr1 88260372 88260517 -108934915 + B2_Mm2 SINE B2 2 164 -31 6 1258 1090 106 50 6 chr1 88260532 88260693 -108934739 + B2_Mm2 SINE B2 2 169 -26 6 1258 377 82 0 0 chr1 88260710 88260759 -108934673 + B2_Mm2 SINE B2 47 95 -100 6 1258 1061 37 73 0 chr1 88260773 88260909 -108934523 - B1_Mm SINE Alu 0 147 2 6 1258 380 310 171 41 chr1 88261499 88261792 -108933640 - L1MC4a LINE L1 -1940 5942 5612 6 1258 872 133 181 62 chr1 88262454 88262647 -108932785 + B3 SINE B2 1 216 0 6 1258 769 160 7 64 chr1 88262668 88262808 -108932624 + B1_Mm SINE Alu 12 143 -4 6 1258 353 247 144 0 chr1 88262833 88262930 -108932502 - B3A SINE B2 -84 114 4 6 1258 1207 68 0 0 chr1 88262955 88263101 -108932331 - B1_Mus2 SINE Alu -1 146 1 7 1258 319 250 0 36 chr1 88263111 88263194 -108932238 - ID4 SINE ID -2 81 2 7 1258 594 246 15 0 chr1 88263230 88263360 -108932072 - B1F SINE Alu -13 136 5 7 1258 353 255 46 28 chr1 88263862 88263888 -108931544 - PB1D10 SINE Alu 0 117 95 7 1258 3213 87 208 6 chr1 88263888 88264374 -108931058 + MT2B2 LTR ERVL 1 584 0 7 1258 353 255 46 28 chr1 88264374 88264456 -108930976 - PB1D10 SINE Alu -23 94 9 7 1258 331 246 14 0 chr1 88264688 88264757 -108930675 - ID4_ SINE ID -11 72 3 7 1258 443 193 83 108 chr1 88264970 88265020 -108930412 - MLT1A1 LTR MaLR -5 403 364 7 1258 1153 43 7 0 chr1 88265020 88265158 -108930274 - B1_Mus1 SINE Alu -8 140 2 7 1258 443 193 83 108 chr1 88265158 88265264 -108930168 - MLT1A1 LTR MaLR -45 363 251 7 1258 385 162 141 0 chr1 88265342 88265441 -108929991 + Lx3C LINE L1 6862 6974 -2 7 1258 922 221 29 10 chr1 88265602 88265808 -108929624 + B3 SINE B2 1 210 -6 7 1258 2903 18 0 3 chr1 88265947 88266285 -108929147 - ORR1A0 LTR MaLR -8 338 2 7 1258 333 0 0 0 chr1 88266285 88266322 -108929110 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1258 351 0 0 0 chr1 88266322 88266360 -108929072 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1258 344 273 20 29 chr1 88266504 88266606 -108928826 + B1_Mur1 SINE Alu 49 149 0 7 1258 252 211 0 0 chr1 88266721 88266792 -108928640 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1258 674 264 89 25 chr1 88266805 88267007 -108928425 - B4 SINE B4 -3 289 75 7 1258 1617 169 100 26 chr1 88267008 88267349 -108928083 - ORR1B1 LTR MaLR 0 394 29 7 1258 232 256 0 0 chr1 88267343 88267386 -108928046 - B4 SINE B4 -214 78 36 7 1258 198 150 0 0 chr1 88267423 88267463 -108927969 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1258 235 188 0 40 chr1 88267481 88267531 -108927901 - B2_Mm2 SINE B2 -101 94 47 7 1258 1043 104 84 12 chr1 88267563 88267729 -108927703 - B2_Mm1t SINE B2 -14 179 2 7 1258 958 76 91 0 chr1 88267729 88267861 -108927571 - B1_Mm SINE Alu -2 145 2 7 1258 465 19 0 0 chr1 88267861 88267915 -108927517 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 7 1258 27 23 0 22 chr1 88267919 88267942 -108927490 + AT_rich Low_complexity Low_complexity 1 23 0 7 1258 879 172 14 0 chr1 88267942 88268087 -108927345 - B1_Mus1 SINE Alu 0 148 2 7 1258 27 23 0 22 chr1 88268087 88268108 -108927324 + AT_rich Low_complexity Low_complexity 1 21 0 7 1258 599 258 30 42 chr1 88268135 88268301 -108927131 - RSINE1 SINE B4 0 165 2 7 1258 680 216 56 28 chr1 88268314 88268457 -108926975 - B1_Mur1 SINE Alu 0 149 3 7 1258 275 232 107 0 chr1 88269385 88269441 -108925991 + RSINE1 SINE B4 49 110 -55 7 1258 646 190 84 7 chr1 88269501 88269644 -108925788 + MTD LTR MaLR 266 419 0 7 1258 1385 198 72 29 chr1 88269661 88270010 -108925422 + ORR1D2 LTR MaLR 1 364 -6 7 1258 319 337 10 19 chr1 88270104 88270207 -108925225 + RMER4A LTR ERVK 24 125 -341 7 1258 238 323 9 94 chr1 88270444 88270514 -108924918 + MIRb SINE MIR 95 156 -112 7 1258 1423 60 21 21 chr1 88270514 88270702 -108924730 + B2_Mm2 SINE B2 2 189 -6 7 1258 238 323 9 94 chr1 88270702 88270737 -108924695 + MIRb SINE MIR 157 191 -77 7 1258 369 0 0 0 chr1 88270739 88270780 -108924652 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1258 283 206 40 14 chr1 88270826 88270844 -108924588 + ID_B1 SINE B4 72 145 -77 7 1258 307 96 56 37 chr1 88270844 88270898 -108924534 + PB1D9 SINE Alu 5 59 -61 7 1258 615 158 0 0 chr1 88270900 88270995 -108924437 + (CAGAGA)n Simple_repeat Simple_repeat 1 95 0 7 1258 593 151 18 28 chr1 88271022 88271131 -108924301 + B1_Mur1 SINE Alu 42 149 0 7 1258 248 295 0 103 chr1 88271227 88271293 -108924139 - RSINE1 SINE B4 0 165 109 7 1258 808 158 80 90 chr1 88271293 88271494 -108923938 - ORR1D2 LTR MaLR 0 370 172 7 1258 562 188 16 57 chr1 88271488 88271612 -108923820 - RSINE1 SINE B4 -45 120 2 7 1258 335 224 154 8 chr1 88271654 88271749 -108923683 - PB1D10 SINE Alu -33 116 16 7 1258 1007 231 62 50 chr1 88271907 88272245 -108923187 + RLTR15 LTR ERVK 2 343 -16 7 1258 356 219 86 86 chr1 88272250 88272355 -108923077 - B3A SINE B2 -93 105 1 7 1258 343 225 91 23 chr1 88272365 88272479 -108922953 - PB1D7 SINE Alu -5 145 23 7 1258 1896 151 5 145 chr1 88272479 88272921 -108922511 - ORR1C2 LTR MaLR 0 384 5 7 1258 624 235 169 0 chr1 88273312 88273478 -108921954 + B3 SINE B2 1 194 -22 7 1258 2973 300 88 56 chr1 88273628 88274446 -108920986 - Charlie8 DNA MER1_type -245 2183 1319 7 1258 519 17 0 0 chr1 88274446 88274506 -108920926 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1258 2973 300 88 56 chr1 88274506 88274867 -108920565 - Charlie8 DNA MER1_type -1110 1318 966 7 1258 353 243 13 13 chr1 88274868 88274943 -108920489 + RSINE1 SINE B4 2 76 -89 7 1258 302 211 55 11 chr1 88275114 88275205 -108920227 + B3A SINE B2 76 170 -28 7 1258 183 80 0 0 chr1 88275230 88275255 -108920177 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1258 360 0 0 0 chr1 88275256 88275296 -108920136 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1258 294 324 0 0 chr1 88275299 88275373 -108920059 - RSINE1 SINE B4 -22 143 70 7 1258 315 287 21 11 chr1 88276563 88276658 -108918774 + ID_B1 SINE B4 121 216 -8 7 1258 468 0 0 0 chr1 88276658 88276710 -108918722 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1258 222 309 0 40 chr1 88276757 88276858 -108918574 + (TATG)n Simple_repeat Simple_repeat 4 100 0 7 1258 338 350 10 10 chr1 88276859 88276963 -108918469 - B4A SINE B4 -3 289 186 7 1258 1324 82 54 0 chr1 88276966 88277150 -108918282 + B2_Mm2 SINE B2 1 194 -1 7 1258 29 28 0 0 chr1 88277375 88277411 -108918021 + AT_rich Low_complexity Low_complexity 1 36 0 7 1258 1017 71 50 0 chr1 88277411 88277552 -108917880 - B1_Mus1 SINE Alu 0 148 1 7 1258 477 0 0 0 chr1 88278119 88278172 -108917260 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1258 322 286 0 14 chr1 88279004 88279075 -108916357 + MTEb LTR MaLR 22 91 -288 7 1258 515 261 66 120 chr1 88279184 88279215 -108916217 + MTEb LTR MaLR 117 140 -239 7 1258 2401 102 12 9 chr1 88279215 88279543 -108915889 - ORR1A4 LTR MaLR 0 329 1 7 1258 584 245 78 76 chr1 88279543 88279785 -108915647 + MTEb LTR MaLR 141 375 -4 7 1258 305 253 44 0 chr1 88279808 88279899 -108915533 - L1MB2 LINE L1 -95 6076 5982 7 1258 263 244 122 39 chr1 88279914 88280119 -108915313 + RLTR21 LTR ERVK 1090 1311 -261 7 1258 460 266 30 38 chr1 88280148 88280281 -108915151 - B4 SINE B4 -160 132 1 7 1258 266 321 25 131 chr1 88280382 88280504 -108914928 + MLT1A1 LTR MaLR 1 109 -299 7 1258 991 141 0 7 chr1 88280738 88280881 -108914551 + B1_Mur3 SINE Alu 1 142 -7 7 1258 265 228 35 81 chr1 88280945 88281031 -108914401 - PB1D10 SINE Alu -1 116 35 7 1258 1676 211 81 43 chr1 88281433 88281805 -108913627 - MTD LTR MaLR -32 387 2 7 1258 225 389 8 34 chr1 88282151 88282268 -108913164 - MIR SINE MIR -60 148 35 7 1258 469 273 184 13 chr1 88282598 88282750 -108912682 - B3 SINE B2 -37 179 2 7 1258 704 168 143 0 chr1 88283380 88283499 -108911933 + B1_Mus1 SINE Alu 1 136 -12 7 1258 459 0 0 0 chr1 88283607 88283658 -108911774 + (TTA)n Simple_repeat Simple_repeat 1 51 0 7 1258 743 113 9 0 chr1 88283661 88283767 -108911665 - B2_Mm1t SINE B2 -85 108 2 7 1258 186 43 0 0 chr1 88283797 88283820 -108911612 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 7 1258 824 188 0 20 chr1 88284964 88285116 -108910316 + B1_Mur4 SINE Alu 2 150 0 7 1258 210 245 0 20 chr1 88285174 88285224 -108910208 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1258 1315 94 5 25 chr1 88286920 88287116 -108908316 - B2_Mm1t SINE B2 -1 192 1 7 1258 522 0 0 0 chr1 88287153 88287211 -108908221 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1258 843 145 43 0 chr1 88287831 88287969 -108907463 + B1_Mur4 SINE Alu 1 144 -6 7 1258 250 149 11 44 chr1 88288415 88288506 -108906926 + CT-rich Low_complexity Low_complexity 3 90 0 7 1258 333 0 0 0 chr1 88288920 88288957 -108906475 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1258 387 0 0 0 chr1 88288957 88288999 -108906433 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1258 356 234 26 13 chr1 88289412 88289490 -108905942 - ID4_ SINE ID -2 81 3 7 1258 216 0 0 0 chr1 88289589 88289613 -108905819 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 7 1258 1237 48 94 23 chr1 88289613 88289776 -108905656 - B2_Mm2 SINE B2 -16 179 2 7 1258 713 221 7 7 chr1 88289880 88290026 -108905406 - B1_Mur3 SINE Alu -2 147 2 7 1258 649 262 99 0 chr1 88290066 88290257 -108905175 - B3 SINE B2 -6 210 1 7 1258 367 304 11 0 chr1 88290257 88290349 -108905083 - BC1_Mm scRNA scRNA -51 101 9 7 1258 320 319 0 21 chr1 88290360 88290456 -108904976 - PB1D10 SINE Alu -20 97 4 7 1258 234 128 0 0 chr1 88290482 88290521 -108904911 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1258 993 62 0 0 chr1 88290594 88290723 -108904709 + (GGGGA)n Simple_repeat Simple_repeat 2 130 0 7 1258 229 375 18 0 chr1 88290912 88291024 -108904408 + MIR SINE MIR 57 170 -92 7 1258 748 203 35 0 chr1 88291137 88291280 -108904152 - B1_Mur1 SINE Alu 0 149 2 7 1258 358 282 82 0 chr1 88292007 88292092 -108903340 + RSINE1 SINE B4 2 93 -72 7 1258 348 43 0 0 chr1 88292371 88292417 -108903015 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1258 233 291 45 23 chr1 88292438 88292526 -108902906 - B4 SINE B4 -200 92 3 7 1258 970 163 88 10 chr1 88292564 88292756 -108902676 - B3 SINE B2 -6 210 4 7 1258 585 188 116 36 chr1 88292789 88292927 -108902505 - B1F2 SINE Alu 0 149 1 7 1258 432 0 0 0 chr1 88293191 88293239 -108902193 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1258 354 283 39 29 chr1 88293279 88293381 -108902051 - PB1D10 SINE Alu -2 115 13 8 1258 622 275 52 16 chr1 88293494 88293686 -108901746 + RMER5 LTR ERV1 239 437 -97 8 1258 465 19 0 0 chr1 88294076 88294130 -108901302 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1258 277 250 260 0 chr1 88294369 88294465 -108900967 - B3A SINE B2 -75 123 3 8 1258 624 283 102 77 chr1 88295297 88295715 -108899717 - RLTR12B LTR ERVK -22 431 2 8 1258 407 255 181 44 chr1 88295718 88295840 -108899592 - B3A SINE B2 -16 182 50 8 1258 968 56 95 0 chr1 88295840 88295966 -108899466 + B1_Mm SINE Alu 1 138 -9 8 1258 510 17 0 0 chr1 88295966 88296025 -108899407 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1258 407 255 181 44 chr1 88296025 88296061 -108899371 - B3A SINE B2 -149 49 2 8 1258 319 184 156 33 chr1 88296180 88296270 -108899162 - PB1D10 SINE Alu 0 117 17 8 1258 3364 132 128 21 chr1 88296489 88297100 -108898332 + RLTR33 LTR ERVK 3 678 0 8 1258 23 54 0 0 chr1 88297822 88297859 -108897573 + AT_rich Low_complexity Low_complexity 1 37 0 8 1258 356 124 0 22 chr1 88297865 88297931 -108897501 - B2_Mm2 SINE B2 -107 109 47 8 1258 1230 119 11 0 chr1 88297982 88298158 -108897274 - B2_Mm1t SINE B2 -14 179 2 8 1258 787 176 6 75 chr1 88298490 88298650 -108896782 + B1_Mur4 SINE Alu 2 150 0 8 1258 1737 16 0 0 chr1 88298655 88298847 -108896585 + B2_Mm1a SINE B2 2 193 0 8 1258 212 0 36 0 chr1 88298860 88298888 -108896544 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1258 21 36 0 0 chr1 88299162 88299190 -108896242 + AT_rich Low_complexity Low_complexity 1 28 0 8 1258 329 294 71 52 chr1 88299804 88299958 -108895474 + ORR1E LTR MaLR 41 197 -162 8 1258 411 56 0 0 chr1 88300214 88300268 -108895164 + (TAA)n Simple_repeat Simple_repeat 2 55 0 8 1258 666 208 32 8 chr1 88300268 88300394 -108895038 - B1_Mur1 SINE Alu -20 129 1 8 1258 280 325 31 97 chr1 88300394 88300482 -108894950 - MT2B LTR ERVL -431 153 64 8 1258 371 267 11 0 chr1 88300591 88300681 -108894751 - L1MC4 LINE L1 -1032 7010 6920 8 1258 665 266 0 0 chr1 88300694 88300822 -108894610 + ID_B1 SINE B4 84 211 -13 8 1258 180 0 0 0 chr1 88300823 88300843 -108894589 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8 1258 923 187 87 31 chr1 88301485 88301691 -108893741 + B3 SINE B2 1 216 0 8 1258 324 0 0 0 chr1 88301691 88301727 -108893705 + (TTG)n Simple_repeat Simple_repeat 2 37 0 8 1258 945 48 112 0 chr1 88301727 88301852 -108893580 - B1_Mus1 SINE Alu -8 140 2 8 1258 584 202 8 179 chr1 88301852 88301879 -108893553 + B2_Mm2 SINE B2 174 194 -1 8 1258 403 265 98 8 chr1 88301982 88302115 -108893317 + B1F SINE Alu 2 146 -3 8 1258 822 108 220 60 chr1 88302119 88302227 -108893205 + B2_Mm2 SINE B2 1 142 -53 8 1258 2619 88 122 102 chr1 88302227 88302736 -108892696 - MURVY-LTR LTR ERV1 0 519 1 8 1258 822 108 220 60 chr1 88302736 88302795 -108892637 + B2_Mm2 SINE B2 143 195 0 8 1258 739 47 9 0 chr1 88302796 88302903 -108892529 + L1Md_T LINE L1 6475 6582 0 8 1258 667 312 39 91 chr1 88303228 88303535 -108891897 - B4A SINE B4 0 292 2 8 1258 523 233 182 8 chr1 88303853 88303974 -108891458 - ID_B1 SINE B4 -5 219 78 8 1258 634 243 27 70 chr1 88304050 88304236 -108891196 - MLT1B LTR MaLR -18 372 195 8 1258 943 245 19 0 chr1 88304284 88304492 -108890940 + B3 SINE B2 5 216 0 8 1258 27 0 0 0 chr1 88304494 88304521 -108890911 + AT_rich Low_complexity Low_complexity 1 27 0 8 1258 396 217 0 0 chr1 88304527 88304610 -108890822 + RSINE1 SINE B4 55 137 -28 8 1258 849 159 64 14 chr1 88304656 88304796 -108890636 + B1_Mur4 SINE Alu 3 149 -1 8 1258 315 239 103 60 chr1 88304955 88305071 -108890361 + MLT2B4 LTR ERVL 114 234 -322 8 1258 204 182 0 0 chr1 88305747 88305791 -108889641 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 8 1258 270 127 42 0 chr1 88305812 88305883 -108889549 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 8 1258 539 210 18 12 chr1 88306393 88306544 -108888888 + CT-rich Low_complexity Low_complexity 15 166 0 8 1258 1182 95 0 0 chr1 88306544 88306692 -108888740 - B1_Mus1 SINE Alu 0 148 1 8 1258 539 210 18 12 chr1 88306692 88306704 -108888728 + polypyrimidine Low_complexity Low_complexity 3 14 0 8 1258 469 198 85 23 chr1 88306725 88306854 -108888578 - B3 SINE B2 -79 137 1 8 1258 322 307 0 0 chr1 88307201 88307276 -108888156 + ID2 SINE ID 3 77 -6 8 1258 225 314 0 146 chr1 88307245 88307368 -108888064 + RMER12 LTR ERVK 746 850 -472 8 1258 283 320 67 10 chr1 88307276 88307305 -108888127 + ID_B1 SINE B4 3 112 -112 8 1258 262 263 52 13 chr1 88307515 88307592 -108887840 - RSINE1 SINE B4 0 165 86 8 1258 509 270 0 0 chr1 88307936 88308051 -108887381 + B3 SINE B2 98 212 -4 8 1258 953 138 0 21 chr1 88308060 88308201 -108887231 - B1_Mus2 SINE Alu 0 147 10 8 1258 465 200 18 83 chr1 88308108 88308217 -108887215 - MT2B LTR ERVL -344 257 156 8 1258 285 276 119 63 chr1 88308216 88308248 -108887184 + MT2B LTR ERVL 128 265 -336 8 1258 584 188 36 57 chr1 88308248 88308346 -108887086 + B1_Mus2 SINE Alu 1 115 -33 8 1258 3689 122 17 39 chr1 88308346 88308895 -108886537 - RMER4B LTR ERVK 0 585 49 8 1258 1345 82 11 5 chr1 88308895 88309079 -108886353 - B2_Mm1a SINE B2 -7 186 2 8 1258 3689 122 17 39 chr1 88309079 88309127 -108886305 - RMER4B LTR ERVK -537 48 1 8 1258 285 276 119 63 chr1 88309127 88309139 -108886293 + MT2B LTR ERVL 266 277 -324 8 1258 584 186 17 58 chr1 88309139 88309166 -108886266 + B1_Mus2 SINE Alu 115 147 0 8 1258 22 35 0 0 chr1 88309170 88309199 -108886233 + AT_rich Low_complexity Low_complexity 1 29 0 8 1258 302 320 106 88 chr1 88309335 88309425 -108886007 - L1MC4 LINE L1 -5172 1043 952 8 1258 1184 61 0 0 chr1 88309425 88309572 -108885860 - B1_Mm SINE Alu 0 147 1 8 1258 302 320 106 88 chr1 88309572 88309707 -108885725 - L1MC4 LINE L1 -5264 951 814 8 1258 207 0 0 0 chr1 88309711 88309734 -108885698 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1258 566 303 147 31 chr1 88310205 88310266 -108885166 + MLT1B LTR MaLR 1 58 -332 8 1258 782 118 80 22 chr1 88310266 88310404 -108885028 + B1_Mur4 SINE Alu 5 150 0 8 1258 566 303 147 31 chr1 88310404 88310628 -108884804 + MLT1B LTR MaLR 59 319 -71 8 1258 845 149 0 0 chr1 88311205 88311339 -108884093 + B1_Mus1 SINE Alu 9 142 -6 8 1258 430 296 69 62 chr1 88311349 88311493 -108883939 + RSINE1 SINE B4 21 165 0 8 1258 335 210 0 0 chr1 88312506 88312568 -108882864 - MER5A DNA MER1_type -90 99 38 8 1258 1195 51 0 0 chr1 88312747 88312885 -108882547 + B1_Mus1 SINE Alu 1 138 -10 8 1258 228 103 154 0 chr1 88312910 88312949 -108882483 + B3A SINE B2 1 45 -153 8 1258 22 0 0 0 chr1 88313073 88313095 -108882337 + AT_rich Low_complexity Low_complexity 1 22 0 8 1258 927 154 7 0 chr1 88313108 88313244 -108882188 - B1_Mus2 SINE Alu -10 137 1 8 1258 760 91 9 0 chr1 88313244 88313354 -108882078 - BC1_Mm scRNA scRNA -41 111 1 8 1258 336 300 180 90 chr1 88313661 88313804 -108881628 - MTD LTR MaLR -1 378 219 8 1258 883 168 14 0 chr1 88313804 88313947 -108881485 + B1_Mur1 SINE Alu 5 149 0 8 1258 388 294 150 36 chr1 88313947 88314166 -108881266 - MTD LTR MaLR -161 218 18 8 1258 240 225 70 0 chr1 88314221 88314292 -108881140 - ID4 SINE ID -7 76 1 8 1258 326 258 83 98 chr1 88314841 88314974 -108880458 + MLT1B LTR MaLR 1 131 -259 8 1258 512 182 42 86 chr1 88314995 88315055 -108880377 + PB1D7 SINE Alu 7 63 -87 8 1258 1256 84 50 0 chr1 88315055 88315234 -108880198 - B2_Mm1t SINE B2 -5 188 1 8 1258 512 193 41 88 chr1 88315234 88315305 -108880127 + PB1D7 SINE Alu 62 129 -21 8 1258 247 290 14 0 chr1 88315310 88315379 -108880053 + G-rich Low_complexity Low_complexity 3 72 0 8 1258 414 0 0 0 chr1 88315846 88315892 -108879540 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1258 573 15 0 0 chr1 88315892 88315957 -108879475 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1258 679 259 79 5 chr1 88316021 88316211 -108879221 - B3 SINE B2 -11 205 2 8 1258 566 223 8 76 chr1 88316262 88316393 -108879039 - RSINE1 SINE B4 -32 133 12 8 1258 512 293 0 70 chr1 88317021 88317179 -108878253 - ID_B1 SINE B4 -4 220 74 8 1258 1423 150 5 14 chr1 88317271 88317494 -108877938 + URR1A DNA MER1_type 1 221 -5 8 1258 436 284 59 90 chr1 88317321 88317576 -108877856 - CYRA11_Mm Unknown Y-chromosome -272 345 99 8 1258 236 374 10 10 chr1 88318058 88318158 -108877274 - LTR85a LTR Gypsy? -574 128 29 8 1258 1433 79 11 5 chr1 88318587 88318778 -108876654 + B2_Mm2 SINE B2 2 193 -2 8 1258 499 254 16 111 chr1 88319062 88319201 -108876231 - ID_B1 SINE B4 -49 243 116 8 1258 3333 38 2 12 chr1 88319201 88319601 -108875831 - MTA_Mm LTR MaLR 0 396 1 8 1258 499 257 20 114 chr1 88319601 88319650 -108875782 - ID_B1 SINE B4 -173 119 70 8 1258 488 276 54 108 chr1 88319646 88319663 -108875769 - B2_Mm2 SINE B2 -3 192 173 8 1258 360 0 0 0 chr1 88319663 88319703 -108875729 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1258 657 276 54 108 chr1 88319703 88319888 -108875544 - B3A SINE B2 -23 172 1 8 1258 282 160 0 0 chr1 88319890 88319940 -108875492 + CT-rich Low_complexity Low_complexity 1 50 0 8 1258 702 219 132 25 chr1 88320082 88320279 -108875153 + B4A SINE B4 1 218 -74 8 1258 324 0 0 0 chr1 88320353 88320389 -108875043 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1258 461 302 117 90 chr1 88320516 88320824 -108874608 - ORR1D2 LTR MaLR -24 335 2 8 1258 879 151 13 20 chr1 88321021 88321170 -108874262 - B1_Mur2 SINE Alu 0 149 2 8 1258 4026 132 71 21 chr1 88321187 88321938 -108873494 + RMER13A LTR ERVK 174 860 0 8 1258 230 172 172 0 chr1 88322109 88322173 -108873259 - ID4 SINE ID -8 75 1 8 1258 425 220 10 90 chr1 88322482 88322582 -108872850 + PB1D10 SINE Alu 19 110 -7 8 1258 400 306 41 68 chr1 88324860 88325007 -108870425 - RLTR18 LTR ERVK -334 282 140 8 1258 238 0 53 26 chr1 88325095 88325133 -108870299 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1258 925 147 28 7 chr1 88325154 88325298 -108870134 - B1_Mur1 SINE Alu -2 147 1 9 1258 272 246 0 34 chr1 88325310 88325369 -108870063 + ID_B1 SINE B4 104 160 -64 9 1258 249 290 6 57 chr1 88325369 88325405 -108870027 + PB1D10 SINE Alu 23 114 -35 9 1258 342 0 0 0 chr1 88325461 88325499 -108869933 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1258 33 0 0 0 chr1 88325499 88325532 -108869900 + AT_rich Low_complexity Low_complexity 1 33 0 9 1258 664 138 101 0 chr1 88325535 88325644 -108869788 + PB1D9 SINE Alu 1 120 0 9 1258 420 236 315 14 chr1 88325684 88325830 -108869602 + B4 SINE B4 38 227 -65 9 1258 774 214 28 0 chr1 88325830 88325975 -108869457 + B1_Mur2 SINE Alu 1 149 0 9 1258 828 156 8 0 chr1 88325983 88326111 -108869321 + B3 SINE B2 1 129 -87 9 1258 300 200 154 0 chr1 88326166 88326231 -108869201 + B4 SINE B4 213 287 -5 9 1258 359 219 0 10 chr1 88326252 88326349 -108869083 + GA-rich Low_complexity Low_complexity 2 97 0 9 1258 611 230 57 7 chr1 88326355 88326495 -108868937 + B1_Mus1 SINE Alu 2 148 0 9 1258 1915 108 32 0 chr1 88326806 88327082 -108868350 + ORR1A4 LTR MaLR 1 285 -44 9 1258 759 196 114 7 chr1 88327082 88327231 -108868201 + B3 SINE B2 1 165 -51 9 1258 324 0 0 0 chr1 88327231 88327267 -108868165 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1258 1759 222 111 3 chr1 88327519 88327899 -108867533 + MTC LTR MaLR 1 421 0 9 1258 464 291 0 52 chr1 88327939 88328073 -108867359 + ID_B1 SINE B4 91 217 -7 9 1258 461 269 101 71 chr1 88328083 88328351 -108867081 + B4 SINE B4 1 276 -16 9 1258 522 46 0 0 chr1 88328377 88328442 -108866990 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1258 1562 43 11 0 chr1 88328456 88328644 -108866788 + B2_Mm1a SINE B2 2 191 -2 9 1258 207 0 0 0 chr1 88328686 88328709 -108866723 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1258 1177 68 7 0 chr1 88328709 88328856 -108866576 - B1_Mus1 SINE Alu 0 148 1 9 1258 22 0 0 0 chr1 88328858 88328880 -108866552 + AT_rich Low_complexity Low_complexity 1 22 0 9 1258 365 312 13 59 chr1 88329034 88329051 -108866381 - ID_B1 SINE B4 -2 222 125 9 1258 709 181 8 23 chr1 88329051 88329181 -108866251 - B1_Mur1 SINE Alu -20 129 2 9 1258 321 333 35 0 chr1 88329387 88329501 -108865931 + B1_Mus1 SINE Alu 28 145 -3 9 1258 1085 93 0 0 chr1 88329852 88329992 -108865440 + B1_Mus1 SINE Alu 1 140 -8 9 1258 23 0 0 0 chr1 88330494 88330517 -108864915 + GC_rich Low_complexity Low_complexity 1 23 0 9 1258 988 143 0 0 chr1 88332634 88332781 -108862651 + B1_Mus1 SINE Alu 1 147 -1 9 1258 293 312 57 0 chr1 88332790 88332871 -108862561 + PB1 SINE Alu 2 74 -53 9 1258 684 208 0 24 chr1 88332898 88333021 -108862411 + ID_B1 SINE B4 51 170 -54 9 1258 213 39 0 0 chr1 88333104 88333130 -108862302 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 9 1258 597 379 142 14 chr1 88333196 88333549 -108861883 + LTR16A LTR ERVL 3 400 -51 9 1258 185 325 23 81 chr1 88333655 88333742 -108861690 - L2a LINE L2 -16 3410 3329 9 1258 222 116 0 0 chr1 88333825 88333868 -108861564 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1258 476 252 0 73 chr1 88334253 88334390 -108861042 - B1_Mm SINE Alu -11 136 10 9 1258 790 218 78 21 chr1 88334277 88334469 -108860963 - ID_B1 SINE B4 -21 203 1 9 1258 294 279 71 32 chr1 88334730 88334856 -108860576 + MER5A1 DNA MER1_type 1 131 -35 9 1258 231 250 0 77 chr1 88334881 88334946 -108860486 + tRNA-Ala-GCA tRNA tRNA 9 68 -7 9 1258 575 173 71 142 chr1 88334993 88335148 -108860284 + B1_Mur1 SINE Alu 6 149 0 9 1258 1098 184 19 24 chr1 88335148 88335354 -108860078 + B3 SINE B2 2 206 -10 9 1258 383 292 109 2 chr1 88335360 88335490 -108859942 + B4 SINE B4 1 143 -149 9 1258 421 170 160 0 chr1 88335580 88335674 -108859758 + PB1D9 SINE Alu 3 111 -9 9 1258 293 315 23 30 chr1 88335992 88336123 -108859309 + MIRb SINE MIR 70 199 -69 9 1258 182 274 20 0 chr1 88336702 88336753 -108858679 - MIRb SINE MIR -18 250 199 9 1258 283 277 185 0 chr1 88337857 88337976 -108857456 - B1F SINE Alu 0 149 9 9 1258 583 153 15 0 chr1 88338060 88338191 -108857241 + (CA)n Simple_repeat Simple_repeat 2 134 0 9 1258 28 0 0 0 chr1 88339165 88339193 -108856239 + GC_rich Low_complexity Low_complexity 1 28 0 9 1258 440 217 85 70 chr1 88340253 88340382 -108855050 + B1_Mur3 SINE Alu 1 131 -18 9 1258 186 43 0 0 chr1 88340487 88340510 -108854922 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 9 1258 275 327 0 9 chr1 88341049 88341154 -108854278 - PB1D10 SINE Alu -9 108 5 9 1258 208 281 18 0 chr1 88341158 88341215 -108854217 - MIR SINE MIR -113 149 92 9 1258 462 173 159 41 chr1 88341236 88341381 -108854051 + RSINE1 SINE B4 4 165 0 9 1258 965 108 14 21 chr1 88341413 88341555 -108853877 - B1_Mur4 SINE Alu 0 150 10 9 1258 28 0 0 26 chr1 88341562 88341584 -108853848 + AT_rich Low_complexity Low_complexity 1 22 0 9 1258 1229 41 14 0 chr1 88341584 88341729 -108853703 - B1_Mm SINE Alu 0 147 1 9 1258 28 0 0 26 chr1 88341729 88341745 -108853687 + AT_rich Low_complexity Low_complexity 1 16 0 9 1258 1173 54 0 13 chr1 88342227 88342376 -108853056 + B1_Mus1 SINE Alu 2 148 0 9 1258 222 37 0 0 chr1 88342376 88342403 -108853029 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1258 228 250 18 18 chr1 88342467 88342524 -108852908 + MLT1E1 LTR MaLR 316 372 -282 9 1259 340 308 75 0 chr1 88342551 88342671 -108852761 + ID_B1 SINE B4 93 221 -3 9 1259 887 166 14 0 chr1 88342752 88342897 -108852535 + B1_Mm SINE Alu 1 147 0 9 1259 629 153 103 37 chr1 88343006 88343142 -108852290 - B1_Mus2 SINE Alu -2 145 1 9 1259 610 193 0 50 chr1 88343239 88343359 -108852073 - B3 SINE B2 -2 214 101 9 1259 604 176 15 0 chr1 88343702 88343833 -108851599 + (TA)n Simple_repeat Simple_repeat 2 134 0 9 1259 250 167 0 32 chr1 88345145 88345207 -108850225 + GA-rich Low_complexity Low_complexity 4 63 0 9 1259 268 317 0 12 chr1 88345216 88345299 -108850133 - ID4_ SINE ID 0 83 2 9 1259 186 43 0 0 chr1 88345317 88345340 -108850092 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1259 919 43 8 0 chr1 88345348 88345465 -108849967 - B1_Mus1 SINE Alu 0 148 31 9 1259 270 0 0 0 chr1 88345501 88345531 -108849901 + (TA)n Simple_repeat Simple_repeat 1 30 0 9 1259 794 125 184 0 chr1 88345541 88345677 -108849755 - B2_Mm2 SINE B2 -34 161 1 9 1259 593 182 118 0 chr1 88345751 88345861 -108849571 - B3 SINE B2 -92 124 2 9 1259 987 137 7 7 chr1 88345877 88346024 -108849408 - B1_Mur4 SINE Alu 0 150 4 9 1259 189 0 0 0 chr1 88346029 88346050 -108849382 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 1259 376 245 19 56 chr1 88346067 88346175 -108849257 - PB1D9 SINE Alu -15 105 2 9 1259 519 222 36 27 chr1 88346221 88346332 -108849100 + PB1D9 SINE Alu 9 120 0 9 1259 720 177 12 12 chr1 88346334 88346500 -108848932 + GA-rich Low_complexity Low_complexity 3 168 0 9 1259 243 61 0 0 chr1 88347285 88347318 -108848114 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1259 312 197 0 27 chr1 88347441 88347514 -108847918 + B3 SINE B2 138 208 -8 9 1259 329 298 25 68 chr1 88347517 88347679 -108847753 + ID_B1 SINE B4 70 224 0 9 1259 367 301 22 36 chr1 88347543 88347681 -108847751 + B1F2 SINE Alu 14 149 0 9 1259 504 0 0 0 chr1 88347732 88347788 -108847644 + (TGG)n Simple_repeat Simple_repeat 1 56 0 9 1259 641 250 7 27 chr1 88347808 88347956 -108847476 - B3 SINE B2 -67 149 5 9 1259 446 171 60 12 chr1 88347972 88348055 -108847377 - ID_B1 SINE B4 -4 220 134 9 1259 325 340 10 0 chr1 88348202 88348299 -108847133 - PB1D10 SINE Alu -18 99 2 9 1259 539 113 131 20 chr1 88348379 88348478 -108846954 + B1_Mus1 SINE Alu 27 136 -12 9 1259 346 266 124 0 chr1 88348488 88348601 -108846831 + ID_B1 SINE B4 92 218 -6 9 1259 483 246 16 58 chr1 88348614 88348735 -108846697 + B1_Mur1 SINE Alu 34 149 0 9 1259 950 231 29 5 chr1 88348766 88348970 -108846462 + B3 SINE B2 2 210 -6 9 1259 1213 48 7 0 chr1 88348973 88349118 -108846314 + B1_Mus2 SINE Alu 2 147 0 9 1259 376 234 34 59 chr1 88349411 88349529 -108845903 + PB1D10 SINE Alu 3 117 0 9 1259 287 280 88 20 chr1 88350029 88350131 -108845301 + PB1D10 SINE Alu 7 115 -2 9 1259 617 245 14 0 chr1 88350201 88350340 -108845092 + B1_Mur3 SINE Alu 1 141 -8 9 1259 447 225 17 51 chr1 88350380 88350497 -108844935 + B1_Mur1 SINE Alu 34 146 -3 9 1259 293 188 94 0 chr1 88350518 88350582 -108844850 + B3 SINE B2 145 214 -2 9 1259 550 106 35 0 chr1 88350664 88350749 -108844683 + PB1D9 SINE Alu 1 88 -32 9 1259 234 81 0 0 chr1 88350755 88350792 -108844640 + (TGGGGG)n Simple_repeat Simple_repeat 1 37 0 9 1259 295 340 97 0 chr1 88350792 88350895 -108844537 + B3 SINE B2 22 134 -82 9 1259 183 42 0 0 chr1 88350898 88350922 -108844510 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1259 782 48 0 37 chr1 88350922 88351031 -108844401 - B1_Mus2 SINE Alu -2 145 41 9 1259 347 211 0 87 chr1 88350969 88351073 -108844359 - RLTR25B LTR ERVK -530 498 404 9 1259 22 0 0 0 chr1 88351159 88351181 -108844251 + AT_rich Low_complexity Low_complexity 1 22 0 1 1259 249 255 0 0 chr1 88351184 88351231 -108844201 + PB1D9 SINE Alu 1 47 -73 1 1259 248 169 0 66 chr1 88351249 88351325 -108844107 + T-rich Low_complexity Low_complexity 6 76 0 1 1259 450 263 11 95 chr1 88351332 88351345 -108844087 - B2_Mm2 SINE B2 0 195 184 1 1259 1294 27 7 0 chr1 88351345 88351492 -108843940 - B1_Mus1 SINE Alu 0 148 1 1 1259 846 189 155 4 chr1 88351492 88351667 -108843765 - B3 SINE B2 0 216 23 1 1259 656 95 8 146 chr1 88351714 88351837 -108843595 + ORR1A3 LTR MaLR 1 106 -220 1 1259 1117 55 6 82 chr1 88351837 88351995 -108843437 + B1_Mus2 SINE Alu 1 146 -1 1 1259 1113 43 0 21 chr1 88352001 88352143 -108843289 + B1_Mm SINE Alu 9 147 0 1 1259 197 31 94 0 chr1 88352145 88352177 -108843255 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1259 1415 67 72 54 chr1 88352191 88352369 -108843063 + ORR1A3 LTR MaLR 93 284 -42 1 1259 1481 31 0 103 chr1 88352369 88352583 -108842849 + B2_Mm1a SINE B2 1 192 -1 1 1259 1415 67 72 54 chr1 88352583 88352626 -108842806 + ORR1A3 LTR MaLR 285 318 -8 1 1259 21 0 0 0 chr1 88352711 88352732 -108842700 + AT_rich Low_complexity Low_complexity 1 21 0 1 1259 1423 58 20 25 chr1 88352733 88352929 -108842503 + B2_Mm2 SINE B2 1 195 0 1 1259 1174 77 0 0 chr1 88352948 88353091 -108842341 + B1_Mus2 SINE Alu 2 144 -3 1 1259 198 0 0 0 chr1 88353091 88353113 -108842319 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1259 810 102 0 0 chr1 88353147 88353265 -108842167 + (GGGAA)n Simple_repeat Simple_repeat 3 120 0 1 1259 385 270 20 0 chr1 88353349 88353449 -108841983 - ID_B1 SINE B4 -2 222 121 1 1259 22 56 0 0 chr1 88353833 88353869 -108841563 + AT_rich Low_complexity Low_complexity 1 36 0 1 1259 388 267 168 0 chr1 88353879 88354010 -108841422 + B3A SINE B2 1 153 -45 1 1259 291 54 0 0 chr1 88354044 88354081 -108841351 + (TTCTC)n Simple_repeat Simple_repeat 4 40 0 1 1259 226 221 0 75 chr1 88354140 88354195 -108841237 + A-rich Low_complexity Low_complexity 3 53 0 1 1259 1273 41 0 0 chr1 88354195 88354342 -108841090 + B1_Mus1 SINE Alu 1 147 -1 1 1259 226 221 0 75 chr1 88354342 88354379 -108841053 + A-rich Low_complexity Low_complexity 54 88 0 1 1259 691 224 45 28 chr1 88354547 88354726 -108840706 - B3A SINE B2 -16 182 1 1 1259 592 239 28 28 chr1 88354766 88354908 -108840524 + B1F1 SINE Alu 2 143 -6 1 1259 489 246 7 80 chr1 88354913 88355050 -108840382 + ID_B1 SINE B4 98 224 0 1 1259 559 141 22 0 chr1 88355073 88355165 -108840267 + ID_B1 SINE B4 130 223 -1 1 1259 1237 48 0 20 chr1 88355244 88355394 -108840038 - B1_Mus1 SINE Alu 0 148 2 1 1259 2558 153 22 0 chr1 88355690 88356102 -108839330 + MTC LTR MaLR 1 421 0 1 1259 825 150 6 98 chr1 88356417 88356580 -108838852 + B1_Mus1 SINE Alu 1 148 0 1 1259 236 311 77 10 chr1 88356611 88356715 -108838717 + PB1 SINE Alu 2 112 -15 1 1259 649 314 37 0 chr1 88356739 88356927 -108838505 + B4A SINE B4 3 197 -95 1 1259 1237 157 8 47 chr1 88356932 88357166 -108838266 - URR1B DNA MER1_type 0 225 1 1 1259 764 200 209 26 chr1 88357172 88357384 -108838048 - RMER4B LTR ERVK 0 611 343 1 1259 555 0 136 0 chr1 88357384 88357539 -108837893 + (CAAG)n Simple_repeat Simple_repeat 1 177 -348 1 1259 555 0 136 0 chr1 88357545 88357847 -108837585 + (CAAG)n Simple_repeat Simple_repeat 178 525 0 1 1259 241 280 41 159 chr1 88357847 88357966 -108837466 - RMER4B LTR ERVK -182 429 313 1 1259 1411 143 48 44 chr1 88358003 88358273 -108837159 - RMER4B LTR ERVK -286 299 29 1 1259 1230 109 37 27 chr1 88358288 88358476 -108836956 - B2_Mm2 SINE B2 -4 191 2 1 1259 328 250 118 0 chr1 88358511 88358587 -108836845 + B4 SINE B4 190 274 -18 1 1259 204 67 0 0 chr1 88358590 88358620 -108836812 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1259 882 266 39 65 chr1 88358679 88359074 -108836358 + MT2B LTR ERVL 13 495 -106 1 1259 590 242 102 28 chr1 88359129 88359154 -108836278 + B1_Mus2 SINE Alu 2 108 -39 1 1259 322 289 130 75 chr1 88359154 88359300 -108836132 + B4 SINE B4 67 220 -72 1 1259 1169 75 0 0 chr1 88359409 88359556 -108835876 + B1_Mus1 SINE Alu 2 148 0 1 1259 201 147 0 0 chr1 88359557 88359591 -108835841 + (GAA)n Simple_repeat Simple_repeat 2 35 0 1 1259 250 99 12 58 chr1 88359649 88359735 -108835697 + A-rich Low_complexity Low_complexity 4 85 0 1 1259 1164 51 0 0 chr1 88359757 88359894 -108835538 + B1_Mus2 SINE Alu 1 137 -10 1 1259 233 29 29 0 chr1 88359894 88359928 -108835504 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1259 284 368 42 8 chr1 88360251 88360369 -108835063 - RSINE1 SINE B4 -9 156 35 1 1259 816 210 96 19 chr1 88360374 88360582 -108834850 - RMER15 LTR ERVL -4 571 348 1 1259 2258 134 40 21 chr1 88360582 88360955 -108834477 + RLTR14 LTR ERV1 1 380 -2 1 1259 527 254 110 80 chr1 88361289 88361589 -108833843 - LTR48B LTR ERV1 -317 327 19 1 1259 297 361 27 53 chr1 88361724 88361911 -108833521 + Charlie15a DNA MER1_type 37 218 -6 1 1259 180 0 0 0 chr1 88361911 88361931 -108833501 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1259 606 252 0 0 chr1 88361965 88362080 -108833352 + B1F2 SINE Alu 22 136 -13 1 1259 517 239 96 7 chr1 88362080 88362215 -108833217 + RSINE1 SINE B4 2 148 -17 1 1259 792 161 7 34 chr1 88362255 88362403 -108833029 - B1_Mus1 SINE Alu 0 148 5 1 1259 183 156 0 0 chr1 88362413 88362445 -108832987 + T-rich Low_complexity Low_complexity 1 32 0 1 1259 276 159 345 0 chr1 88362446 88362520 -108832912 - B1F SINE Alu -1 148 24 1 1259 416 234 299 49 chr1 88362573 88362743 -108832689 - ORR1E LTR MaLR 0 370 155 1 1259 1687 204 79 6 chr1 88362743 88363084 -108832348 + ORR1D1 LTR MaLR 1 366 -8 1 1259 878 101 24 8 chr1 88363091 88363220 -108832212 + B1_Mus1 SINE Alu 37 148 0 1 1259 501 305 6 39 chr1 88363227 88363260 -108832172 - ORR1E LTR MaLR -183 176 146 1 1259 812 81 187 0 chr1 88363260 88363383 -108832049 + B1_Mus1 SINE Alu 3 148 0 1 1259 501 305 6 39 chr1 88363383 88363530 -108831902 - ORR1E LTR MaLR -214 145 2 1 1259 1186 49 0 20 chr1 88363731 88363878 -108831554 - B1_Mus2 SINE Alu -2 145 2 1 1259 619 126 0 10 chr1 88364088 88364192 -108831240 - RMER21A LTR ERV1 -427 520 418 1 1259 1658 26 0 20 chr1 88364425 88364621 -108830811 + B2_Mm1a SINE B2 2 193 0 1 1259 946 96 14 22 chr1 88364644 88364783 -108830649 + B1_Mus1 SINE Alu 11 148 0 1 1259 500 286 37 37 chr1 88364865 88365079 -108830353 + ID_B1 SINE B4 3 216 -8 1 1259 204 97 0 0 chr1 88365154 88365185 -108830247 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1 1259 323 178 29 10 chr1 88365302 88365404 -108830028 + CT-rich Low_complexity Low_complexity 1 104 0 1 1259 954 216 10 37 chr1 88365447 88365664 -108829768 - B3 SINE B2 0 216 6 1 1259 629 149 0 0 chr1 88366184 88366278 -108829154 + B1_Mur1 SINE Alu 47 140 -9 1 1259 915 166 28 11 chr1 88366283 88366460 -108828972 + B2_Mm2 SINE B2 2 181 -14 1 1259 450 272 29 14 chr1 88366481 88366619 -108828813 + B1_Mur1 SINE Alu 2 141 -8 1 1259 264 309 0 12 chr1 88366628 88366710 -108828722 + ID4_ SINE ID 3 83 0 1 1259 917 119 14 14 chr1 88366724 88366869 -108828563 + B1_Mur4 SINE Alu 6 150 0 1 1259 405 301 48 85 chr1 88366728 88366890 -108828542 + B4 SINE B4 94 250 -42 1 1259 283 222 170 10 chr1 88366890 88366990 -108828442 + PB1D7 SINE Alu 4 119 -1 1 1259 405 301 48 85 chr1 88366990 88367016 -108828416 + B4 SINE B4 251 275 -17 1 1259 192 77 0 0 chr1 88367039 88367065 -108828367 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1259 368 211 14 0 chr1 88367641 88367712 -108827720 - ID2 SINE ID -9 74 3 1 1259 644 233 38 140 chr1 88368057 88368246 -108827186 - B3 SINE B2 -5 211 43 1 1259 1227 35 7 0 chr1 88368246 88368391 -108827041 - B1_Mm SINE Alu 0 147 2 1 1259 644 233 38 140 chr1 88368391 88368436 -108826996 - B3 SINE B2 -174 42 1 1 1259 361 143 143 0 chr1 88368446 88368509 -108826923 + ID_B1 SINE B4 148 219 -5 1 1259 339 287 11 0 chr1 88368594 88368688 -108826744 + RSINE1 SINE B4 2 96 -69 1 1259 431 204 17 58 chr1 88369286 88369406 -108826026 + PB1D7 SINE Alu 6 120 0 1 1259 1243 54 0 0 chr1 88369954 88370101 -108825331 - B1_Mm SINE Alu 0 147 1 1 1259 749 100 151 48 chr1 88370593 88370719 -108824713 + B1_Mus1 SINE Alu 2 140 -8 1 1259 639 0 0 0 chr1 88370720 88370791 -108824641 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 1 1259 1569 52 5 0 chr1 88370791 88370982 -108824450 + B2_Mm1a SINE B2 2 193 0 1 1259 321 135 0 0 chr1 88370983 88371035 -108824397 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 1 1259 186 71 0 0 chr1 88371084 88371112 -108824320 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1259 816 260 33 33 chr1 88371121 88371336 -108824096 + B3 SINE B2 1 215 -1 1 1259 23 68 0 0 chr1 88371336 88371380 -108824052 + AT_rich Low_complexity Low_complexity 1 44 0 1 1259 226 168 42 42 chr1 88371494 88371662 -108823770 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1259 1365 90 0 41 chr1 88372081 88372277 -108823155 - B2_Mm2 SINE B2 -7 188 1 1 1259 546 168 126 50 chr1 88372296 88372415 -108823017 + B1_Mur2 SINE Alu 22 149 0 1 1259 233 29 0 29 chr1 88372415 88372450 -108822982 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1259 667 179 6 103 chr1 88372472 88372628 -108822804 - B1_Mur2 SINE Alu -7 142 2 1 1259 1167 56 0 7 chr1 88372934 88373078 -108822354 + B1_Mus2 SINE Alu 5 147 0 1 1259 258 105 0 0 chr1 88373078 88373116 -108822316 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1259 198 0 0 0 chr1 88373285 88373307 -108822125 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1259 414 194 9 84 chr1 88373386 88373399 -108822033 + MT2B LTR ERVL 153 157 -444 1 1259 608 167 45 2 chr1 88373399 88373529 -108821903 + B1_Mus1 SINE Alu 2 149 0 1 1259 236 191 0 0 chr1 88373611 88373653 -108821779 - B3 SINE B2 -92 124 83 1 1259 268 294 18 62 chr1 88373702 88373829 -108821603 - B1F SINE Alu -9 141 18 1 1259 243 0 0 0 chr1 88373830 88373857 -108821575 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1259 344 304 37 86 chr1 88374023 88374169 -108821263 - B3A SINE B2 -19 179 46 1 1259 1010 143 0 0 chr1 88374169 88374316 -108821116 - B1_Mur4 SINE Alu -1 149 3 1 1259 344 304 37 86 chr1 88374316 88374356 -108821076 - B3A SINE B2 -153 45 3 1 1259 1561 198 75 0 chr1 88374476 88374794 -108820638 + ORR1B1 LTR MaLR 13 354 -40 1 1259 1275 98 12 0 chr1 88374795 88374968 -108820464 + B2_Mm1t SINE B2 1 175 -18 1 1259 183 42 0 0 chr1 88374969 88374993 -108820439 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1259 1066 104 0 0 chr1 88375004 88375139 -108820293 + B1_Mus2 SINE Alu 1 135 -12 1 1259 242 0 61 0 chr1 88375141 88375174 -108820258 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1259 1141 66 167 6 chr1 88375184 88375352 -108820080 + B2_Mm2 SINE B2 1 195 0 1 1259 331 128 0 0 chr1 88375375 88375422 -108820010 + ORR1B1 LTR MaLR 340 386 -8 1 1259 281 305 37 14 chr1 88376259 88376396 -108819036 - PB1D7 SINE Alu -94 217 11 1 1259 990 264 25 126 chr1 88376460 88376785 -108818647 - B4A SINE B4 0 292 1 1 1259 428 294 26 2 chr1 88376785 88376905 -108818527 - PB1 SINE Alu -168 146 19 1 1259 538 243 0 9 chr1 88376913 88377025 -108818407 + PB1D10 SINE Alu 2 112 -5 1 1259 213 292 31 0 chr1 88377030 88377095 -108818337 + RSINE1 SINE B4 2 68 -97 1 1259 918 167 0 0 chr1 88377221 88377359 -108818073 - B1_Mus2 SINE Alu -8 139 2 1 1259 270 0 0 0 chr1 88378056 88378086 -108817346 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1259 260 284 105 110 chr1 88378119 88378372 -108817060 - ID_B1 SINE B4 -21 271 1 1 1259 265 342 8 95 chr1 88378513 88378639 -108816793 + PB1D10 SINE Alu 1 115 -2 1 1259 853 110 87 14 chr1 88378642 88378780 -108816652 + B1_Mus1 SINE Alu 1 148 0 1 1259 267 31 0 0 chr1 88378831 88378863 -108816569 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1259 475 280 12 123 chr1 88378868 88379031 -108816401 + RSINE1 SINE B4 21 165 0 1 1259 769 107 141 30 chr1 88379074 88379209 -108816223 + B1_Mur4 SINE Alu 1 150 0 1 1259 198 0 0 0 chr1 88379386 88379408 -108816024 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 1 1259 338 328 47 65 chr1 88379752 88379861 -108815571 + ID_B1 SINE B4 2 202 -22 1 1259 560 208 38 0 chr1 88379861 88379957 -108815475 + B1_Mus2 SINE Alu 26 121 -26 1 1259 3375 41 5 2 chr1 88379957 88380352 -108815080 - MTA_Mm LTR MaLR 0 396 1 1 1259 351 0 0 0 chr1 88380367 88380406 -108815026 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1259 267 269 9 103 chr1 88380702 88380740 -108814692 - BC1_Mm scRNA scRNA -32 120 87 1 1259 1118 61 7 20 chr1 88380740 88380890 -108814542 - B1_Mus1 SINE Alu 0 148 1 1 1259 320 269 9 103 chr1 88380890 88380967 -108814465 - ID4 SINE ID -66 86 16 1 1259 509 274 90 66 chr1 88381394 88381585 -108813847 - B3 SINE B2 0 216 19 1 1259 1396 70 48 0 chr1 88381585 88381771 -108813661 - B2_Mm2 SINE B2 0 195 1 1 1259 509 274 90 66 chr1 88381771 88381790 -108813642 - B3 SINE B2 -198 18 1 1 1259 746 214 14 0 chr1 88382086 88382231 -108813201 - B1_Mus1 SINE Alu -1 147 1 1 1259 1079 84 42 0 chr1 88382248 88382390 -108813042 - B1_Mus1 SINE Alu 0 148 1 1 1259 522 83 0 0 chr1 88382395 88382467 -108812965 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 1 1259 1192 62 0 0 chr1 88382481 88382627 -108812805 - B1_Mm SINE Alu 0 147 2 1 1259 297 296 0 150 chr1 88382627 88382669 -108812763 - ID_B1 SINE B4 -9 215 182 1 1259 270 0 0 0 chr1 88382669 88382699 -108812733 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1259 497 198 22 0 chr1 88382702 88382793 -108812639 - B1_Mur2 SINE Alu -38 111 19 1 1259 428 223 40 35 chr1 88382930 88383044 -108812388 - B1_Mur4 SINE Alu -10 110 2 1 1259 1710 26 0 0 chr1 88383053 88383246 -108812186 - B2_Mm1a SINE B2 0 193 1 1 1259 791 203 65 35 chr1 88383268 88383467 -108811965 - B3 SINE B2 -4 212 8 1 1259 222 307 39 26 chr1 88383398 88383475 -108811957 - RSINE1 SINE B4 -85 80 3 1 1259 204 170 21 21 chr1 88383997 88384045 -108811387 + GA-rich Low_complexity Low_complexity 5 52 0 1 1259 429 243 19 0 chr1 88384932 88385039 -108810393 - PB1D9 SINE Alu -8 112 4 1 1259 349 233 22 0 chr1 88385565 88385655 -108809777 + B1_Mm SINE Alu 1 92 -55 1 1259 1403 79 16 5 chr1 88385849 88386040 -108809392 - B2_Mm2 SINE B2 0 195 3 1 1259 975 223 14 46 chr1 88386051 88386267 -108809165 - B3 SINE B2 0 216 8 1 1259 1166 55 14 0 chr1 88386307 88386452 -108808980 + B1_Mus2 SINE Alu 1 147 0 1 1259 281 250 141 43 chr1 88386686 88386778 -108808654 - B1F SINE Alu 0 149 49 1 1259 419 264 17 91 chr1 88386922 88386962 -108808470 + ID_B1 SINE B4 63 224 0 1 1259 725 160 37 30 chr1 88386962 88387097 -108808335 + B1_Mur3 SINE Alu 14 149 0 1 1259 484 146 71 24 chr1 88387122 88387206 -108808226 + B1_Mur1 SINE Alu 26 113 -36 1 1259 272 159 13 115 chr1 88387136 88387214 -108808218 + MT2B LTR ERVL 203 272 -329 1 1259 741 209 0 51 chr1 88387606 88387762 -108807670 + B1_Mur3 SINE Alu 2 149 0 1 1259 1201 49 0 7 chr1 88387793 88387938 -108807494 + B1_Mm SINE Alu 4 147 0 1 1259 194 0 39 0 chr1 88387940 88387966 -108807466 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1259 441 0 0 0 chr1 88388306 88388355 -108807077 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1259 333 206 63 39 chr1 88389601 88389722 -108805710 - B1_Mur1 SINE Alu 0 120 1 1 1259 623 261 5 117 chr1 88389742 88389882 -108805550 - ID_B1 SINE B4 -9 215 84 1 1259 1413 95 16 0 chr1 88389882 88390072 -108805360 - B2_Mm2 SINE B2 -2 193 1 1 1259 623 261 5 117 chr1 88390072 88390144 -108805288 - ID SINE ID -141 83 27 1 1259 1114 104 0 0 chr1 88390150 88390294 -108805138 - B1_Mus2 SINE Alu 0 147 4 1 1259 235 283 0 62 chr1 88390371 88390435 -108804997 - ID4_ SINE ID -16 67 8 1 1259 965 199 183 70 chr1 88390771 88391143 -108804289 + RMER10A LTR ERVL 29 442 0 1 1259 447 250 0 0 chr1 88391263 88391359 -108804073 - PB1D9 SINE Alu -6 114 19 1 1259 264 289 0 100 chr1 88391292 88391392 -108804040 - MT2B LTR ERVL -361 240 151 1 1259 1227 20 7 20 chr1 88391406 88391555 -108803877 - B1_Mus2 SINE Alu 0 147 1 1 1259 736 236 81 0 chr1 88391567 88391741 -108803691 - B3 SINE B2 -4 212 25 1 1259 650 173 47 0 chr1 88391714 88391841 -108803591 - B1_Mm SINE Alu -3 144 12 1 1259 284 25 50 0 chr1 88391848 88391888 -108803544 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1259 1210 68 0 0 chr1 88391927 88392074 -108803358 - B1_Mus2 SINE Alu 0 147 1 1 1259 810 132 7 35 chr1 88392074 88392215 -108803217 + B1_Mus1 SINE Alu 12 148 0 1 1259 504 276 37 7 chr1 88392224 88392359 -108803073 + B1_Mur4 SINE Alu 12 150 0 1 1259 276 253 167 12 chr1 88392401 88392485 -108802947 - RSINE1 SINE B4 -67 98 2 1 1259 294 242 69 59 chr1 88392923 88393068 -108802364 - B3 SINE B2 -3 213 16 1 1259 641 208 8 0 chr1 88393072 88393197 -108802235 - B1_Mus2 SINE Alu -20 127 2 1 1259 1128 82 0 7 chr1 88393214 88393361 -108802071 - B1_Mus2 SINE Alu 0 147 2 1 1259 310 274 11 45 chr1 88393362 88393450 -108801982 - ID_B1 SINE B4 -7 217 133 1 1259 21 57 0 0 chr1 88395146 88395181 -108800251 + AT_rich Low_complexity Low_complexity 1 35 0 1 1259 322 131 0 76 chr1 88396026 88396092 -108799340 - ID4 SINE ID 0 83 23 1 1259 378 0 0 0 chr1 88396099 88396141 -108799291 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1259 775 240 77 15 chr1 88396141 88396336 -108799096 - ID_B1 SINE B4 -13 211 5 1 1259 306 325 0 0 chr1 88396997 88397077 -108798355 - ID4_ SINE ID -2 81 2 1 1259 299 243 17 112 chr1 88397092 88397208 -108798224 - PB1D10 SINE Alu -12 105 1 1 1259 531 0 0 0 chr1 88397211 88397270 -108798162 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1 1259 589 197 41 34 chr1 88397279 88397426 -108798006 - B1F SINE Alu -1 148 1 1 1259 423 0 0 0 chr1 88398125 88398172 -108797260 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1259 246 330 44 9 chr1 88398557 88398670 -108796762 - PB1D10 SINE Alu 0 117 1 1 1259 303 197 100 53 chr1 88399401 88399551 -108795881 + RMER17C LTR ERVK 119 275 -135 1 1259 212 220 95 63 chr1 88399620 88399683 -108795749 - RSINE1 SINE B4 -44 121 57 1 1259 188 184 0 0 chr1 88401439 88401481 -108793951 + MIRc SINE MIR 117 156 -106 1 1259 735 101 78 21 chr1 88401498 88401640 -108793792 - B1_Mur3 SINE Alu 0 149 7 1 1259 1154 82 0 7 chr1 88402488 88402636 -108792796 + B1_Mus1 SINE Alu 2 148 0 1 1259 456 35 0 0 chr1 88402647 88402705 -108792727 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1259 602 264 39 111 chr1 88403580 88403760 -108791672 + ID_B1 SINE B4 7 166 -58 1 1259 1270 47 0 0 chr1 88403760 88403908 -108791524 - B1_Mus1 SINE Alu 0 148 1 1 1259 602 264 39 111 chr1 88403908 88403961 -108791471 + ID_B1 SINE B4 167 223 -1 1 1259 450 221 19 28 chr1 88404842 88404949 -108790483 + PB1D10 SINE Alu 12 117 0 1 1259 579 164 58 0 chr1 88405353 88405457 -108789975 - B1_Mur1 SINE Alu 0 149 40 1 1259 876 108 39 0 chr1 88405721 88405851 -108789581 + B1_Mus1 SINE Alu 3 137 -11 1 1259 220 27 26 26 chr1 88405854 88405892 -108789540 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1259 1142 88 0 7 chr1 88406559 88406707 -108788725 + B1_Mus1 SINE Alu 2 148 0 1 1259 380 169 13 0 chr1 88406707 88406784 -108788648 + GA-rich Low_complexity Low_complexity 2 79 0 1 1259 279 298 70 9 chr1 88406855 88406970 -108788462 + MIR SINE MIR 61 182 -80 1 1259 1042 65 58 0 chr1 88407237 88407375 -108788057 - B1_Mus2 SINE Alu 0 147 2 1 1259 309 118 0 0 chr1 88408285 88408336 -108787096 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 1 1259 466 305 246 13 chr1 88408766 88409002 -108786430 + B4A SINE B4 2 292 0 1 1259 239 157 0 19 chr1 88409029 88409081 -108786351 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1259 344 268 25 129 chr1 88409121 88409284 -108786148 - ID_B1 SINE B4 0 224 79 1 1259 460 246 76 34 chr1 88409286 88409404 -108786028 - PB1 SINE Alu -2 125 3 1 1259 216 0 0 0 chr1 88409412 88409436 -108785996 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1259 1147 43 50 0 chr1 88409446 88409586 -108785846 - B1_Mm SINE Alu 0 147 1 1 1259 2927 39 31 0 chr1 88409876 88410259 -108785173 + MTB LTR MaLR 1 395 -5 1 1259 1208 55 0 0 chr1 88410259 88410405 -108785027 + B1_Mus2 SINE Alu 1 146 -1 1 1259 441 239 25 25 chr1 88410625 88410745 -108784687 + PB1D9 SINE Alu 1 120 0 1 1259 1227 48 0 0 chr1 88410955 88411102 -108784330 - B1_Mus1 SINE Alu 0 148 2 1 1259 461 238 20 0 chr1 88411306 88411407 -108784025 + PB1D7 SINE Alu 18 120 0 1 1259 225 0 0 0 chr1 88411424 88411449 -108783983 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1 1259 469 221 104 58 chr1 88411831 88411871 -108783561 - RSINE1 SINE B4 0 165 132 1 1259 387 0 0 0 chr1 88411871 88411914 -108783518 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1259 469 221 104 58 chr1 88411914 88412027 -108783405 - RSINE1 SINE B4 -34 131 5 1 1259 437 270 0 0 chr1 88412038 88412138 -108783294 - ID_B1 SINE B4 -1 223 124 1 1259 1006 52 0 7 chr1 88412298 88412434 -108782998 + B1_Mm SINE Alu 13 147 0 1 1259 349 268 45 84 chr1 88412299 88412454 -108782978 + B4A SINE B4 99 247 -45 1 1259 308 276 11 75 chr1 88412452 88412546 -108782886 - B1F2 SINE Alu -25 124 37 1 1259 557 227 78 0 chr1 88412580 88412708 -108782724 - B1F SINE Alu -11 138 1 1 1259 234 286 14 0 chr1 88412890 88412960 -108782472 + G-rich Low_complexity Low_complexity 2 72 0 1 1259 28 0 0 0 chr1 88413247 88413275 -108782157 + AT_rich Low_complexity Low_complexity 1 28 0 1 1259 189 107 0 0 chr1 88413565 88413593 -108781839 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 1 1259 644 206 76 0 chr1 88413724 88413855 -108781577 - B1F2 SINE Alu -5 144 4 1 1259 3537 102 66 0 chr1 88413978 88414525 -108780907 - MT2B2 LTR ERVL -1 583 1 1 1259 394 271 9 36 chr1 88414545 88414656 -108780776 - PB1D10 SINE Alu -7 110 3 1 1259 299 328 98 9 chr1 88414988 88415123 -108780309 + MIR SINE MIR 28 170 -98 1 1259 941 142 0 26 chr1 88415195 88415347 -108780085 + B1_Mur3 SINE Alu 2 149 0 1 1259 385 283 0 11 chr1 88415875 88415968 -108779464 - B1F1 SINE Alu -51 98 7 1 1259 416 282 32 8 chr1 88416090 88416215 -108779217 - RSINE1 SINE B4 -26 139 12 1 1259 360 293 27 60 chr1 88416360 88416509 -108778923 - B1F SINE Alu -4 145 2 1 1259 230 283 0 32 chr1 88416535 88416597 -108778835 - BC1_Mm scRNA scRNA -82 70 11 1 1259 712 270 159 28 chr1 88416657 88416908 -108778524 - B4A SINE B4 0 292 9 1 1259 551 271 226 48 chr1 88417284 88417532 -108777900 - B4A SINE B4 0 292 1 1 1259 1193 76 0 0 chr1 88417551 88417696 -108777736 - B1_Mus2 SINE Alu 0 147 3 1 1259 189 0 0 0 chr1 88417699 88417720 -108777712 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1259 468 189 123 0 chr1 88417720 88417826 -108777606 - PB1D9 SINE Alu 0 120 2 1 1259 333 0 0 0 chr1 88419138 88419175 -108776257 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1259 324 0 0 0 chr1 88419779 88419815 -108775617 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1259 964 125 7 14 chr1 88419868 88420014 -108775418 + B1_Mus2 SINE Alu 2 146 -1 1 1259 427 243 78 0 chr1 88420060 88420163 -108775269 - RSINE1 SINE B4 -30 135 25 1 1259 216 0 0 0 chr1 88420345 88420369 -108775063 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1259 467 158 178 0 chr1 88420376 88420477 -108774955 - PB1D9 SINE Alu -1 119 1 1 1259 182 91 30 0 chr1 88422907 88422940 -108772492 + (CCCCCT)n Simple_repeat Simple_repeat 5 38 0 1 1259 21 36 0 0 chr1 88423836 88423864 -108771568 + GC_rich Low_complexity Low_complexity 1 28 0 1 1259 195 204 0 0 chr1 88426075 88426119 -108769313 + GA-rich Low_complexity Low_complexity 2 45 0 1 1259 370 205 182 33 chr1 88428133 88428254 -108767178 + B1_Mm SINE Alu 7 145 -2 1 1259 193 274 92 40 chr1 88428780 88428856 -108766576 + MIRc SINE MIR 76 155 -113 1 1259 1191 120 66 0 chr1 88429610 88429793 -108765639 - B2_Mm2 SINE B2 0 195 1 1 1259 875 200 120 22 chr1 88430438 88430622 -108764810 - B3 SINE B2 -13 203 2 1 1259 1546 48 16 0 chr1 88430645 88430831 -108764601 - B2_Mm1a SINE B2 -3 190 2 1 1259 251 20 77 19 chr1 88430888 88430940 -108764492 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 1 1259 827 55 0 0 chr1 88430940 88431050 -108764382 - B1_Mus2 SINE Alu 0 147 38 1 1259 281 215 10 79 chr1 88430962 88431063 -108764369 - RLTR25B LTR ERVK -507 521 428 1 1259 706 113 16 8 chr1 88431086 88431211 -108764221 + B1_Mus2 SINE Alu 21 146 -1 1 1259 1280 40 0 0 chr1 88431215 88431363 -108764069 + B1_Mus1 SINE Alu 1 148 0 1 1259 281 261 130 0 chr1 88431574 88431666 -108763766 - RSINE1 SINE B4 -59 106 3 1 1259 31 26 0 0 chr1 88431687 88431725 -108763707 + AT_rich Low_complexity Low_complexity 1 38 0 1 1259 784 178 0 0 chr1 88431725 88431854 -108763578 + B2_Mm2 SINE B2 1 129 -66 1 1259 306 274 0 52 chr1 88431923 88432000 -108763432 - PB1D9 SINE Alu -5 115 43 1 1259 1174 41 0 45 chr1 88432003 88432019 -108763413 - B1_Mm SINE Alu 0 147 138 1 1259 243 0 0 0 chr1 88432019 88432046 -108763386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1259 1174 41 0 45 chr1 88432046 88432183 -108763249 - B1_Mm SINE Alu -10 137 1 1 1259 855 226 69 35 chr1 88432184 88432386 -108763046 - B3 SINE B2 -5 211 3 1 1259 251 313 90 62 chr1 88433071 88433248 -108762184 + B4 SINE B4 3 184 -108 1 1259 468 208 20 5 chr1 88433158 88433275 -108762157 + B1F SINE Alu 5 120 0 1 1259 25 0 0 0 chr1 88433298 88433323 -108762109 + AT_rich Low_complexity Low_complexity 1 25 0 1 1259 1103 62 0 70 chr1 88433323 88433480 -108761952 + B1_Mm SINE Alu 1 146 -1 1 1259 1094 87 12 0 chr1 88433511 88433672 -108761760 - B2_Mm2 SINE B2 -30 165 3 1 1259 436 241 204 0 chr1 88433743 88433851 -108761581 - RSINE1 SINE B4 -15 150 21 1 1259 1109 75 0 40 chr1 88434114 88434266 -108761166 - B1_Mus1 SINE Alu -1 147 2 1 1259 1030 215 24 10 chr1 88434300 88434507 -108760925 - B3 SINE B2 -4 212 3 1 1259 671 262 0 0 chr1 88434515 88434656 -108760776 - ID_B1 SINE B4 0 224 84 1 1259 739 265 30 30 chr1 88434732 88434934 -108760498 - B3 SINE B2 0 216 15 1 1259 466 128 0 25 chr1 88434994 88435074 -108760358 - B1_Mus2 SINE Alu 0 147 70 1 1259 290 229 26 103 chr1 88435074 88435110 -108760322 - ID_B1 SINE B4 0 223 117 1 1259 327 49 0 0 chr1 88435358 88435399 -108760033 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1259 213 128 0 25 chr1 88435431 88435471 -108759961 + T-rich Low_complexity Low_complexity 2 40 0 1 1259 205 268 23 30 chr1 88435497 88435540 -108759892 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 1 1259 209 161 0 0 chr1 88435508 88435539 -108759893 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1259 403 224 360 0 chr1 88435540 88435687 -108759745 - B3 SINE B2 -13 203 4 1 1259 205 268 23 30 chr1 88435687 88435708 -108759724 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1259 1712 5 21 0 chr1 88435708 88435897 -108759535 - B2_Mm1a SINE B2 0 193 1 1 1259 205 268 23 30 chr1 88435897 88435920 -108759512 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1259 890 221 55 20 chr1 88435920 88436119 -108759313 - B3 SINE B2 -6 210 5 1 1259 205 268 23 30 chr1 88436119 88436160 -108759272 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 1 1259 1156 49 14 0 chr1 88436162 88436305 -108759127 - B1_Mm SINE Alu -1 146 2 1 1259 1437 69 37 16 chr1 88436322 88436513 -108758919 - B2_Mm2 SINE B2 0 195 1 1 1259 506 282 38 17 chr1 88436513 88436695 -108758737 - B3A SINE B2 -12 183 2 1 1259 318 236 111 0 chr1 88436718 88436790 -108758642 + ID4 SINE ID 2 81 -2 1 1259 1185 55 7 0 chr1 88437233 88437379 -108758053 + B1_Mus2 SINE Alu 1 147 0 1 1259 257 109 18 0 chr1 88437379 88437434 -108757998 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 1 1259 247 185 127 16 chr1 88437455 88437540 -108757892 + B1F2 SINE Alu 5 102 -47 1 1259 534 172 11 0 chr1 88437561 88437654 -108757778 - B1_Mus1 SINE Alu -15 133 40 1 1259 1237 41 0 0 chr1 88438256 88438403 -108757029 - B1_Mus1 SINE Alu -1 147 1 1 1259 258 315 14 0 chr1 88438677 88438750 -108756682 - B4 SINE B4 -133 159 86 1 1259 296 317 12 0 chr1 88438815 88438897 -108756535 + ID SINE ID 6 88 -136 1 1259 324 279 34 34 chr1 88438874 88438963 -108756469 + PB1D10 SINE Alu 28 116 -1 1 1259 536 236 24 0 chr1 88438965 88439088 -108756344 + ID_B1 SINE B4 99 224 0 1 1259 365 294 62 27 chr1 88440291 88440403 -108755029 + PB1D10 SINE Alu 1 116 -1 1 1259 871 154 27 20 chr1 88440403 88440548 -108754884 + B1_Mur1 SINE Alu 1 147 -2 1 1259 228 290 16 0 chr1 88441229 88441291 -108754141 - ID4_ SINE ID -7 76 14 1 1259 38 0 0 0 chr1 88441347 88441385 -108754047 + AT_rich Low_complexity Low_complexity 1 38 0 1 1259 665 152 21 44 chr1 88441386 88441522 -108753910 + B1_Mus1 SINE Alu 2 144 -5 1 1259 1044 203 56 5 chr1 88441537 88441735 -108753697 - B3 SINE B2 -8 208 1 1 1259 234 316 66 0 chr1 88441852 88441928 -108753504 - ID4 SINE ID -1 82 2 1 1259 27 0 0 0 chr1 88441996 88442023 -108753409 + AT_rich Low_complexity Low_complexity 1 27 0 1 1259 1108 76 7 7 chr1 88442025 88442171 -108753261 - B1_Mm SINE Alu 0 147 2 1 1259 942 158 7 7 chr1 88442611 88442758 -108752674 - B1_Mur3 SINE Alu 0 149 3 1 1259 324 0 0 0 chr1 88443362 88443398 -108752034 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1259 718 247 74 0 chr1 88443769 88443931 -108751501 - ID_B1 SINE B4 0 224 51 1 1259 786 121 23 0 chr1 88444211 88444343 -108751089 - B1_Mm SINE Alu -12 135 1 1 1259 278 293 12 0 chr1 88444397 88444479 -108750953 + BC1_Mm scRNA scRNA 8 90 -62 1 1259 246 314 17 110 chr1 88444694 88444812 -108750620 + RSINE1 SINE B4 59 165 0 1 1259 214 208 25 49 chr1 88444867 88444948 -108750484 + A-rich Low_complexity Low_complexity 6 84 0 1 1259 689 244 11 11 chr1 88444955 88445137 -108750295 + B3A SINE B2 5 186 -12 1 1259 572 228 58 32 chr1 88445551 88445705 -108749727 + RSINE1 SINE B4 8 165 0 1 1259 1211 42 0 0 chr1 88445836 88445979 -108749453 - B1_Mus2 SINE Alu 0 147 5 1 1259 296 239 30 0 chr1 88446891 88446958 -108748474 - ID SINE ID -150 74 6 1 1259 289 180 119 59 chr1 88447494 88447612 -108747820 + Lx9 LINE L1 7519 7643 -1 1 1259 254 312 60 48 chr1 88447730 88447898 -108747534 - B3 SINE B2 -1 215 46 1 1259 493 258 23 8 chr1 88447835 88447964 -108747468 + B3 SINE B2 73 203 -13 1 1259 243 0 0 0 chr1 88448309 88448336 -108747096 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 1 1259 345 75 0 0 chr1 88448428 88448481 -108746951 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 1 1259 252 0 0 0 chr1 88448949 88448977 -108746455 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1259 23 0 0 0 chr1 88448977 88449000 -108746432 + AT_rich Low_complexity Low_complexity 1 23 0 1 1259 1225 37 152 0 chr1 88449107 88449271 -108746161 + B2_Mm1a SINE B2 1 189 -4 1 1259 287 236 42 0 chr1 88449294 88449366 -108746066 + B3 SINE B2 125 199 -17 1 1259 375 23 0 0 chr1 88449367 88449411 -108746021 + (CAAG)n Simple_repeat Simple_repeat 1 44 0 1 1259 1435 130 14 0 chr1 88449540 88449763 -108745669 + URR1A DNA MER1_type 1 226 0 1 1259 225 221 12 72 chr1 88449962 88450045 -108745387 + GA-rich Low_complexity Low_complexity 3 80 0 1 1259 358 247 343 15 chr1 88450164 88450375 -108745057 + MLT1A0 LTR MaLR 95 374 -16 1 1259 685 231 0 64 chr1 88450569 88450740 -108744692 - RSINE1 SINE B4 -4 161 2 1 1259 457 238 203 16 chr1 88450816 88450944 -108744488 - B3 SINE B2 -64 152 1 1 1259 600 292 15 44 chr1 88451029 88451233 -108744199 - B3A SINE B2 0 198 1 1 1259 580 248 55 0 chr1 88451294 88451439 -108743993 - RSINE1 SINE B4 -10 155 3 1 1259 346 246 210 8 chr1 88451469 88451588 -108743844 + B1F SINE Alu 1 143 -6 1 1259 1762 127 138 24 chr1 88451629 88452000 -108743432 + MTC LTR MaLR 1 413 -8 1 1259 4575 146 138 56 chr1 88452004 88452906 -108742526 + MTC-int LTR MaLR 1 1003 -255 1 1259 1125 69 7 0 chr1 88452906 88453050 -108742382 - B1_Mus2 SINE Alu 0 147 3 1 1259 4575 146 138 56 chr1 88453050 88453304 -108742128 + MTC-int LTR MaLR 1004 1252 -6 1 1259 1798 180 46 58 chr1 88453311 88453430 -108742002 + MTC LTR MaLR 7 104 -317 1 1259 944 198 50 40 chr1 88453430 88453630 -108741802 - B3 SINE B2 -14 202 1 1 1259 1798 180 46 58 chr1 88453630 88453922 -108741510 + MTC LTR MaLR 105 413 -8 1 1259 945 87 57 21 chr1 88454036 88454177 -108741255 - B1_Mur4 SINE Alu -3 147 2 1 1259 383 281 23 40 chr1 88454877 88455051 -108740381 + L1MC4a LINE L1 7712 7882 0 1 1259 334 292 17 42 chr1 88455055 88455173 -108740259 + PB1D10 SINE Alu 2 116 -1 1 1259 395 282 36 60 chr1 88455177 88455343 -108740089 + RSINE1 SINE B4 4 165 0 1 1259 759 197 28 7 chr1 88455369 88455512 -108739920 + B1_Mur2 SINE Alu 2 147 -2 1 1259 999 199 9 33 chr1 88455547 88455760 -108739672 + B3 SINE B2 5 212 -4 1 1259 1026 80 7 0 chr1 88456534 88456671 -108738761 + B1_Mus1 SINE Alu 5 142 -6 1 1259 348 325 47 31 chr1 88456694 88456821 -108738611 - RSINE1 SINE B4 -36 129 1 1 1259 859 195 89 0 chr1 88456914 88457104 -108738328 - B3 SINE B2 -9 207 1 1 1259 220 276 12 50 chr1 88457199 88457279 -108738153 + ID4 SINE ID 1 77 -6 1 1259 428 139 13 0 chr1 88457350 88457429 -108738003 + CT-rich Low_complexity Low_complexity 2 81 0 1 1259 1013 58 80 0 chr1 88457429 88457566 -108737866 - B1_Mus1 SINE Alu 0 148 1 1 1259 210 91 0 0 chr1 88458487 88458520 -108736912 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 1 1259 538 250 22 29 chr1 88458543 88458679 -108736753 - B1_Mur1 SINE Alu -14 135 1 1 1259 213 39 0 0 chr1 88458829 88458855 -108736577 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1259 630 186 21 35 chr1 88458870 88459015 -108736417 + B1_Mur4 SINE Alu 1 143 -7 1 1259 210 37 0 0 chr1 88459017 88459044 -108736388 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1259 440 183 217 0 chr1 88459732 88459847 -108735585 + B1F SINE Alu 1 140 -9 1 1259 410 303 0 66 chr1 88459931 88460097 -108735335 + RSINE1 SINE B4 3 157 -8 1 1259 246 239 164 0 chr1 88460137 88460204 -108735228 - ID4_ SINE ID -4 79 2 1 1259 416 254 9 24 chr1 88460261 88460379 -108735053 - B1_Mus2 SINE Alu -7 140 2 1 1259 256 273 0 0 chr1 88460732 88460787 -108734645 + ID4 SINE ID 25 79 -4 1 1259 261 306 111 0 chr1 88460823 88460931 -108734501 + B1F SINE Alu 2 121 -28 1 1259 363 239 197 0 chr1 88460960 88461077 -108734355 + MER5B DNA MER1_type 1 140 -38 1 1259 362 100 17 0 chr1 88461082 88461142 -108734290 + B3A SINE B2 1 61 -137 1 1259 255 125 0 0 chr1 88461198 88461238 -108734194 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1259 453 84 14 27 chr1 88461297 88461370 -108734062 + B1_Mus2 SINE Alu 76 147 0 1 1259 417 86 0 0 chr1 88461430 88461488 -108733944 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1259 347 225 0 14 chr1 88461561 88461633 -108733799 - ID4_ SINE ID -10 73 3 1 1259 294 326 11 0 chr1 88461778 88461873 -108733559 - MER5A1 DNA MER1_type -66 100 5 1 1259 264 274 87 50 chr1 88462882 88463043 -108732389 - MIR SINE MIR -33 229 63 1 1259 437 277 27 0 chr1 88463047 88463159 -108732273 - PB1D10 SINE Alu -2 115 1 1 1259 723 289 0 0 chr1 88463159 88463227 -108732205 - ID SINE ID -143 81 14 1 1259 602 318 0 37 chr1 88464422 88464585 -108730847 - RSINE1 SINE B4 0 165 9 1 1259 784 190 14 0 chr1 88464601 88464743 -108730689 - B1_Mur3 SINE Alu 0 149 6 1 1259 346 218 76 96 chr1 88464882 88464901 -108730531 + B4A SINE B4 83 219 -73 1 1259 937 34 0 0 chr1 88464901 88465020 -108730412 + B1_Mus2 SINE Alu 21 139 -8 1 1259 441 0 0 0 chr1 88465020 88465069 -108730363 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1259 346 218 76 96 chr1 88465069 88465087 -108730345 + B4A SINE B4 220 236 -56 1 1259 568 234 106 7 chr1 88465470 88465612 -108729820 + B3A SINE B2 1 156 -42 1 1259 240 122 0 0 chr1 88465614 88465655 -108729777 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1259 1471 54 37 16 chr1 88465672 88465861 -108729571 + B2_Mm2 SINE B2 1 193 -2 1 1259 26 0 0 0 chr1 88466417 88466443 -108728989 + AT_rich Low_complexity Low_complexity 1 26 0 1 1259 878 228 43 24 chr1 88466443 88466650 -108728782 - B3 SINE B2 -5 211 1 1 1259 539 314 6 19 chr1 88466701 88466860 -108728572 - RSINE1 SINE B4 -2 163 7 1 1259 790 235 0 0 chr1 88467562 88467711 -108727721 + B1_Mur4 SINE Alu 2 150 0 1 1259 369 0 0 0 chr1 88467784 88467825 -108727607 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 1259 216 279 0 102 chr1 88468217 88468305 -108727127 - ID4 SINE ID -2 81 3 1 1259 246 224 75 0 chr1 88468664 88468731 -108726701 + L2c LINE L2 3097 3168 -219 1 1259 798 194 0 0 chr1 88468869 88469013 -108726419 - B1_Mur3 SINE Alu 0 149 6 1 1259 429 44 0 42 chr1 88469019 88469090 -108726342 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1 1259 709 174 45 8 chr1 88469098 88469231 -108726201 - B1_Mur4 SINE Alu -10 140 3 1 1259 724 265 55 0 chr1 88469631 88469831 -108725601 + B3 SINE B2 1 211 -5 1 1259 1029 176 53 24 chr1 88470022 88470231 -108725201 + B3 SINE B2 1 215 -1 1 1259 661 247 107 72 chr1 88470256 88470518 -108724914 + B4 SINE B4 3 273 -19 1 1259 684 274 99 20 chr1 88470589 88470790 -108724642 - ID_B1 SINE B4 -6 218 2 1 1259 875 162 7 0 chr1 88470961 88471097 -108724335 - B1_Mur4 SINE Alu -13 137 1 1 1259 190 279 215 8 chr1 88471100 88471229 -108724203 - MIRb SINE MIR -70 198 40 1 1259 684 188 0 36 chr1 88471555 88471693 -108723739 + B1_Mur4 SINE Alu 18 150 0 1 1259 311 217 267 15 chr1 88471821 88471952 -108723480 - RSINE1 SINE B4 0 165 2 1 1259 346 259 45 27 chr1 88472057 88472168 -108723264 + PB1 SINE Alu 13 125 -2 1 1259 1207 27 7 7 chr1 88472884 88473031 -108722401 + B1_Mus2 SINE Alu 1 147 0 1 1259 180 0 0 0 chr1 88473032 88473052 -108722380 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1259 234 62 0 0 chr1 88473523 88473555 -108721877 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1260 21 0 0 0 chr1 88473659 88473680 -108721752 + AT_rich Low_complexity Low_complexity 1 21 0 1 1260 879 162 258 0 chr1 88473683 88473850 -108721582 - B3 SINE B2 -6 210 1 1 1260 21 36 0 0 chr1 88473903 88473931 -108721501 + AT_rich Low_complexity Low_complexity 1 28 0 1 1260 412 279 27 9 chr1 88473958 88474070 -108721362 + B1F SINE Alu 27 140 -9 1 1260 339 328 59 25 chr1 88474119 88474357 -108721075 + Lx8 LINE L1 7223 7468 -5 1 1260 225 0 0 0 chr1 88474357 88474382 -108721050 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1260 215 312 25 76 chr1 88474394 88474512 -108720920 + BC1_Mm scRNA scRNA 4 115 -37 1 1260 1653 21 21 0 chr1 88474617 88474806 -108720626 + B2_Mm1t SINE B2 1 193 0 1 1260 216 0 0 0 chr1 88474843 88474867 -108720565 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1260 218 368 71 13 chr1 88474922 88475076 -108720356 - MIR SINE MIR -25 237 75 1 1260 467 264 32 71 chr1 88475118 88475273 -108720159 - B1_Mur1 SINE Alu 0 149 1 1 1260 1365 198 75 78 chr1 88475491 88475597 -108719835 + ORR1D1 LTR MaLR 1 101 -273 1 1260 1404 81 21 0 chr1 88475597 88475783 -108719649 + B2_Mm2 SINE B2 3 192 -3 1 1260 1365 198 75 78 chr1 88475783 88476048 -108719384 + ORR1D1 LTR MaLR 102 371 -3 1 1260 370 260 91 111 chr1 88476196 88476228 -108719204 - B2_Mm2 SINE B2 0 195 159 1 1260 306 125 0 0 chr1 88476228 88476276 -108719156 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1260 411 234 111 80 chr1 88476276 88476442 -108718990 - B3A SINE B2 -37 158 1 1 1260 996 129 14 0 chr1 88476643 88476790 -108718642 - B1_Mur3 SINE Alu 0 149 1 1 1260 328 272 24 12 chr1 88477298 88477380 -108718052 - B1F SINE Alu -61 88 6 1 1260 471 186 135 85 chr1 88477679 88477820 -108717612 + B1_Mur1 SINE Alu 1 148 -1 1 1260 622 239 26 21 chr1 88477903 88478061 -108717371 - ID_B1 SINE B4 -46 246 86 1 1260 180 77 0 0 chr1 88478641 88478667 -108716765 + (C)n Simple_repeat Simple_repeat 1 26 0 1 1260 245 333 59 59 chr1 88479844 88479997 -108715435 - MIR3 SINE MIR -17 191 39 1 1260 681 147 140 191 chr1 88480660 88480845 -108714587 + URR1B DNA MER1_type 1 182 -43 1 1260 1121 22 0 15 chr1 88480845 88480981 -108714451 - B1_Mus2 SINE Alu -12 135 2 1 1260 681 147 140 191 chr1 88480981 88481031 -108714401 + URR1B DNA MER1_type 183 224 -1 1 1260 197 65 32 0 chr1 88481467 88481498 -108713934 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 1 1260 1029 37 0 0 chr1 88481498 88481632 -108713800 - B1_Mus1 SINE Alu 0 148 15 1 1260 366 322 120 25 chr1 88481641 88482013 -108713419 - L1M5 LINE L1 -539 5701 5282 1 1260 802 102 17 0 chr1 88482022 88482140 -108713292 - PB1D9 SINE Alu 0 120 1 1 1260 1325 93 16 21 chr1 88482147 88482334 -108713098 - B2_Mm2 SINE B2 -9 186 1 1 1260 310 236 81 9 chr1 88482335 88482446 -108712986 - L1M5 LINE L1 -856 5290 5172 1 1260 244 232 0 115 chr1 88482473 88482551 -108712881 - ID4 SINE ID -10 73 5 1 1260 718 253 90 15 chr1 88482577 88482778 -108712654 - B3 SINE B2 0 216 1 1 1260 30 0 0 0 chr1 88482778 88482808 -108712624 + AT_rich Low_complexity Low_complexity 1 30 0 1 1260 913 159 28 0 chr1 88482817 88482962 -108712470 - B1_Mur4 SINE Alu 0 150 2 1 1260 1172 48 7 0 chr1 88483014 88483159 -108712273 + B1_Mm SINE Alu 2 147 0 1 1260 316 145 14 28 chr1 88484400 88484471 -108710961 + CT-rich Low_complexity Low_complexity 3 72 0 1 1260 489 219 94 0 chr1 88484899 88485027 -108710405 + B3 SINE B2 71 210 -6 1 1260 264 236 62 41 chr1 88486759 88486780 -108708652 - PB1D10 SINE Alu -7 110 12 1 1260 280 224 26 0 chr1 88486780 88486856 -108708576 - ID_B1 SINE B4 -54 170 93 1 1260 310 279 0 0 chr1 88487408 88487476 -108707956 - tRNA-Ala-GCY_ tRNA tRNA -5 70 3 1 1260 276 272 4 35 chr1 88487485 88487582 -108707850 - B1F SINE Alu 0 149 53 1 1260 1043 92 50 0 chr1 88487675 88487816 -108707616 - B1_Mus1 SINE Alu 0 148 1 1 1260 1221 55 0 0 chr1 88488117 88488263 -108707169 + B1_Mus2 SINE Alu 2 147 0 1 1260 463 188 105 18 chr1 88488369 88488483 -108706949 - ID_B1 SINE B4 -66 158 35 1 1260 183 147 59 0 chr1 88488708 88488742 -108706690 - MIR3 SINE MIR -15 193 158 1 1260 654 185 78 43 chr1 88489249 88489390 -108706042 - B1_Mur1 SINE Alu 0 149 4 1 1260 555 266 19 43 chr1 88489442 88489603 -108705829 + RSINE1 SINE B4 8 164 -1 1 1260 346 291 55 0 chr1 88489625 88489735 -108705697 - PB1D10 SINE Alu -1 116 1 1 1260 313 290 0 27 chr1 88489938 88490048 -108705384 - PB1D10 SINE Alu -1 116 10 1 1260 315 224 94 28 chr1 88490065 88490193 -108705239 - Lx7 LINE L1 -17 7679 7566 1 1260 1103 301 11 20 chr1 88490235 88490584 -108704848 - Lx7 LINE L1 -367 7329 6984 1 1260 844 129 0 8 chr1 88490592 88490725 -108704707 + B1_Mus2 SINE Alu 9 140 -7 1 1260 844 227 34 0 chr1 88490725 88490901 -108704531 - Lx7 LINE L1 -693 7003 6822 1 1260 299 263 69 59 chr1 88490978 88491079 -108704353 + RSINE1 SINE B4 60 161 -4 1 1260 210 235 0 42 chr1 88491157 88491228 -108704204 + CT-rich Low_complexity Low_complexity 2 69 0 1 1260 344 280 56 8 chr1 88491399 88491525 -108703907 + MIR SINE MIR 24 155 -107 1 1260 422 262 135 18 chr1 88491588 88491751 -108703681 + B3A SINE B2 1 182 -16 1 1260 240 302 125 16 chr1 88491761 88491953 -108703479 - MER46C DNA MER2_type -46 292 80 1 1260 536 149 11 11 chr1 88492197 88492292 -108703140 + B1_Mus2 SINE Alu 52 146 -1 1 1260 567 164 0 0 chr1 88492383 88492487 -108702945 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1260 327 88 17 34 chr1 88493718 88493777 -108701655 + B1_Mur4 SINE Alu 3 60 -90 1 1260 477 236 0 0 chr1 88493782 88493956 -108701476 + GA-rich Low_complexity Low_complexity 2 175 0 1 1260 398 159 0 0 chr1 88493967 88494030 -108701402 + B1_Mur4 SINE Alu 41 103 -47 1 1260 303 275 55 48 chr1 88494064 88494209 -108701223 - B1F1 SINE Alu 0 149 4 1 1260 225 0 0 0 chr1 88494382 88494407 -108701025 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1260 1041 56 42 0 chr1 88494407 88494549 -108700883 - B1_Mus1 SINE Alu 0 148 1 1 1260 1301 92 54 0 chr1 88494852 88495036 -108700396 - B2_Mm2 SINE B2 0 195 2 1 1260 340 206 0 81 chr1 88496230 88496304 -108699128 + PB1D10 SINE Alu 1 68 -49 1 1260 340 248 61 52 chr1 88496625 88496740 -108698692 - B1F SINE Alu 0 149 34 1 1260 840 280 14 14 chr1 88496756 88496970 -108698462 - B3 SINE B2 0 216 3 1 1260 483 226 123 46 chr1 88497124 88497254 -108698178 - B1_Mur1 SINE Alu 0 149 10 1 1260 716 271 25 0 chr1 88498004 88498203 -108697229 + B3 SINE B2 8 211 -5 1 1260 411 38 0 0 chr1 88498998 88499051 -108696381 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1260 584 232 165 16 chr1 88499811 88499999 -108695433 - B4 SINE B4 -20 272 57 1 1260 223 269 0 0 chr1 88500001 88500053 -108695379 - B4A SINE B4 -238 54 3 1 1260 442 16 32 16 chr1 88500064 88500127 -108695305 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 2 1260 1133 52 0 0 chr1 88500127 88500263 -108695169 - B1_Mm SINE Alu -10 137 2 3 1260 780 200 7 14 chr1 88500310 88500457 -108694975 - B1_Mur1 SINE Alu -1 148 3 4 1260 299 300 96 101 chr1 88500482 88500503 -108694929 - B4A SINE B4 -46 246 176 5 1260 739 178 16 0 chr1 88500503 88500632 -108694800 - B1_Mus1 SINE Alu 0 148 18 6 1260 299 300 96 101 chr1 88500632 88500660 -108694772 - B4A SINE B4 -46 175 70 5 1260 689 224 41 41 chr1 88500641 88500813 -108694619 - B3A SINE B2 0 198 27 7 1260 1184 56 0 0 chr1 88500828 88500971 -108694461 - B1_Mus2 SINE Alu -4 143 1 8 1260 652 213 29 29 chr1 88501284 88501424 -108694008 + B3 SINE B2 3 142 -74 9 1260 23 0 0 0 chr1 88502775 88502798 -108692634 + AT_rich Low_complexity Low_complexity 1 23 0 1 1260 195 42 0 0 chr1 88502976 88503000 -108692432 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1260 183 80 0 0 chr1 88503075 88503100 -108692332 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1260 225 0 0 0 chr1 88503553 88503578 -108691854 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1260 25 0 0 0 chr1 88503708 88503733 -108691699 + AT_rich Low_complexity Low_complexity 1 25 0 1 1260 547 135 21 43 chr1 88503733 88503826 -108691606 - B1_Mus2 SINE Alu -5 142 52 1 1260 797 262 5 20 chr1 88504734 88504929 -108690503 - MLT1B LTR MaLR -6 384 193 1 1260 485 212 109 8 chr1 88505246 88505365 -108690067 + B1F SINE Alu 16 146 -3 1 1260 207 0 0 0 chr1 88505445 88505468 -108689964 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1260 1124 68 0 27 chr1 88505468 88505609 -108689823 - B1_Mm SINE Alu -9 138 2 1 1260 303 281 109 66 chr1 88505802 88505939 -108689493 + RSINE1 SINE B4 23 165 0 2 1260 419 200 94 0 chr1 88505969 88506054 -108689378 + B1_Mur2 SINE Alu 1 93 -56 2 1260 752 148 60 159 chr1 88506205 88506334 -108689098 - B2_Mm2 SINE B2 -5 190 63 2 1260 4041 52 32 4 chr1 88506334 88506834 -108688598 + L1_Mus1 LINE L1 6054 6567 0 2 1260 752 148 60 159 chr1 88506834 88506905 -108688527 - B2_Mm2 SINE B2 -133 62 10 2 1260 448 292 41 24 chr1 88507067 88507190 -108688242 + RSINE1 SINE B4 4 128 -37 2 1260 236 216 162 29 chr1 88507577 88507682 -108687750 + RMER21B LTR ERV1 677 795 -47 2 1260 2196 107 7 0 chr1 88508174 88508484 -108686948 - ORR1A2 LTR MaLR 0 327 16 2 1260 281 275 69 70 chr1 88508623 88508727 -108686705 + MLT1F1 LTR MaLR 1 103 -452 2 1260 682 204 90 42 chr1 88508734 88508923 -108686509 + B3A SINE B2 1 198 0 2 1260 1461 125 124 16 chr1 88508935 88509205 -108686227 - MTC LTR MaLR -22 399 111 2 1260 1113 168 111 0 chr1 88509199 88509407 -108686025 - MTC-int LTR MaLR -633 625 395 3 1260 430 297 98 35 chr1 88509751 88509954 -108685478 + ID_B1 SINE B4 68 272 -20 3 1260 587 197 57 0 chr1 88510037 88510159 -108685273 + B1F2 SINE Alu 4 132 -17 3 1260 288 111 0 0 chr1 88510448 88510493 -108684939 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1260 1010 118 0 14 chr1 88510584 88510730 -108684702 - B1_Mur4 SINE Alu 0 150 7 3 1260 704 192 0 0 chr1 88510730 88510850 -108684582 - MTC-int LTR MaLR -861 397 278 3 1260 600 294 21 0 chr1 88511178 88511321 -108684111 + RSINE1 SINE B4 4 149 -16 3 1260 1574 201 108 14 chr1 88511645 88512004 -108683428 - MTC LTR MaLR -25 396 32 3 1260 534 128 71 55 chr1 88512016 88512198 -108683234 - RMER17C LTR ERVK -137 273 89 3 1260 256 191 0 41 chr1 88512191 88512240 -108683192 - MTC LTR MaLR -374 47 1 3 1260 333 0 0 0 chr1 88512299 88512336 -108683096 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 1260 973 114 18 6 chr1 88512337 88512497 -108682935 - B2_Mm2 SINE B2 -46 170 2 3 1260 368 106 0 22 chr1 88513071 88513137 -108682295 - B2_Mm2 SINE B2 -107 109 47 3 1260 1235 93 11 11 chr1 88513188 88513362 -108682070 - B2_Mm1t SINE B2 -14 179 6 4 1260 257 253 32 67 chr1 88513450 88513617 -108681815 - L1MD3 LINE L1 -1002 7040 6792 4 1260 406 265 89 44 chr1 88513644 88513802 -108681630 + B4A SINE B4 3 167 -125 4 1260 441 255 55 28 chr1 88514001 88514110 -108681322 - PB1D7 SINE Alu -5 115 4 4 1260 255 254 41 27 chr1 88514366 88514439 -108680993 - L1MC4 LINE L1 -4477 1738 1665 4 1260 303 274 136 68 chr1 88514516 88514546 -108680886 + MTD LTR MaLR 6 39 -340 4 1260 464 272 120 0 chr1 88514546 88514671 -108680761 - B1_Mur1 SINE Alu -6 143 4 4 1260 785 226 191 3 chr1 88514671 88514954 -108680478 + MTD LTR MaLR 40 388 -31 4 1260 241 204 37 0 chr1 88515190 88515244 -108680188 + LTR41 LTR ERVL 92 147 -621 4 1260 1426 143 0 39 chr1 88515270 88515502 -108679930 - URR1B DNA MER1_type 0 225 3 4 1260 742 288 67 19 chr1 88515600 88515869 -108679563 + LTR41 LTR ERVL 479 760 -8 4 1260 263 208 57 0 chr1 88515907 88515960 -108679472 - B4 SINE B4 -2 290 235 4 1260 355 213 0 13 chr1 88516043 88516119 -108679313 - B4A SINE B4 -2 290 216 5 1260 324 0 0 0 chr1 88516131 88516167 -108679265 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1260 659 292 0 0 chr1 88516167 88516311 -108679121 - RSINE1 SINE B4 -20 145 2 5 1260 601 232 14 7 chr1 88516311 88516434 -108678998 - B4A SINE B4 -63 229 106 5 1260 621 302 18 41 chr1 88516478 88516699 -108678733 - ID_B1 SINE B4 -6 218 3 5 1260 283 247 39 0 chr1 88516702 88516779 -108678653 - ID2 SINE ID -1 82 3 5 1260 180 0 0 0 chr1 88516964 88516984 -108678448 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5 1260 216 83 60 40 chr1 88517065 88517115 -108678317 + (TTTAA)n Simple_repeat Simple_repeat 1 51 0 5 1260 465 243 56 9 chr1 88517145 88517253 -108678179 + PB1D9 SINE Alu 1 113 -7 5 1260 346 323 53 58 chr1 88517254 88517286 -108678146 + L1M4 LINE L1 4400 4430 -1716 5 1260 1070 224 19 9 chr1 88517286 88517498 -108677934 + B3 SINE B2 2 215 -1 5 1260 346 323 53 58 chr1 88517498 88517544 -108677888 + L1M4 LINE L1 4431 4471 -1675 5 1260 189 0 0 0 chr1 88517544 88517565 -108677867 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1260 617 323 53 58 chr1 88517565 88517827 -108677605 + L1M4 LINE L1 4472 4739 -1407 5 1260 473 282 60 34 chr1 88517920 88518204 -108677228 - ORR1E LTR MaLR -81 303 2 6 1260 722 289 128 59 chr1 88518204 88518893 -108676539 - ORR1E-int LTR MaLR -54 1526 728 6 1260 596 304 39 5 chr1 88519357 88519562 -108675870 - ID_B1 SINE B4 -12 212 1 6 1260 386 194 0 0 chr1 88520324 88520386 -108675046 - B1_Mur3 SINE Alu -86 63 2 6 1260 524 154 24 8 chr1 88520394 88520518 -108674914 + CT-rich Low_complexity Low_complexity 2 127 0 6 1260 305 181 79 53 chr1 88520520 88520596 -108674836 - ORR1E LTR MaLR -66 313 236 6 1260 493 227 64 0 chr1 88520647 88520757 -108674675 - ORR1E LTR MaLR -242 117 1 6 1260 825 273 44 5 chr1 88520830 88521036 -108674396 + ID_B1 SINE B4 5 218 -6 6 1260 1175 196 9 9 chr1 88521049 88521265 -108674167 + B3 SINE B2 1 216 0 6 1260 2603 123 55 2 chr1 88521326 88521724 -108673708 + MTC LTR MaLR 3 421 0 6 1260 201 206 37 18 chr1 88522264 88522373 -108673059 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1260 338 23 0 23 chr1 88522388 88522432 -108673000 + HAL1-3A_ME LINE L1 1976 2018 -840 7 1260 355 221 123 16 chr1 88522602 88522713 -108672719 - B1F SINE Alu 0 120 1 7 1260 882 208 91 10 chr1 88522792 88522991 -108672441 - ID_B1 SINE B4 -7 217 3 7 1260 372 305 72 13 chr1 88523020 88523173 -108672259 + RSINE1 SINE B4 4 165 0 7 1260 284 236 0 11 chr1 88523207 88523297 -108672135 + (CATA)n Simple_repeat Simple_repeat 4 92 0 7 1260 584 193 43 17 chr1 88523515 88523631 -108671801 + PB1D9 SINE Alu 1 119 -1 7 1260 882 256 77 18 chr1 88523669 88523973 -108671459 - LTR48B LTR ERV1 -30 614 249 7 1260 342 293 123 57 chr1 88523955 88524183 -108671249 - LTR48B LTR ERV1 -231 413 171 7 1260 227 284 11 33 chr1 88524316 88524407 -108671025 + CT-rich Low_complexity Low_complexity 3 91 0 7 1260 271 200 0 57 chr1 88524407 88524460 -108670972 - ID_B1 SINE B4 0 224 175 7 1260 359 281 52 0 chr1 88524413 88524509 -108670923 - PB1D10 SINE Alu -6 114 14 7 1260 637 188 309 0 chr1 88525432 88525597 -108669835 + B3 SINE B2 1 216 0 8 1260 1112 96 7 0 chr1 88525602 88525748 -108669684 + B1_Mus2 SINE Alu 1 147 0 8 1260 805 205 4 4 chr1 88525761 88525991 -108669441 + GA-rich Low_complexity Low_complexity 1 230 0 8 1260 252 143 0 0 chr1 88525988 88526030 -108669402 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 8 1260 230 272 39 115 chr1 88526287 88526340 -108669092 - ID_B1 SINE B4 -39 185 90 7 1260 254 157 78 0 chr1 88526340 88526391 -108669041 - B1_Mus2 SINE Alu -84 63 9 8 1260 231 61 0 0 chr1 88526899 88526932 -108668500 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1260 1138 68 0 7 chr1 88526932 88527071 -108668361 - B1_Mus2 SINE Alu -7 140 2 8 1260 856 250 58 26 chr1 88527121 88527310 -108668122 - B3A SINE B2 -3 195 1 8 1260 471 18 0 0 chr1 88527318 88527374 -108668058 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1260 352 111 19 0 chr1 88527384 88527438 -108667994 - RSINE1 SINE B4 -40 125 71 8 1260 617 256 112 5 chr1 88528942 88529138 -108666294 - ID_B1 SINE B4 0 224 8 9 1260 327 283 28 19 chr1 88529215 88529323 -108666109 - PB1D10 SINE Alu -2 115 7 9 1260 252 238 132 81 chr1 88529532 88529729 -108665703 + L1M4 LINE L1 2967 3173 -2973 9 1260 378 0 0 0 chr1 88531396 88531438 -108663994 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1260 496 230 129 0 chr1 88531444 88531567 -108663865 - MLT1J2 LTR MaLR -267 181 44 9 1260 449 254 83 23 chr1 88531599 88531732 -108663700 - MER34A1 LTR ERV1 -2 585 445 9 1260 3092 59 0 8 chr1 88531831 88532222 -108663210 - L1Md_F2 LINE L1 0 6582 6195 9 1260 1194 205 36 195 chr1 88532287 88532341 -108663091 + MTD LTR MaLR 6 55 -364 9 1260 3948 22 9 0 chr1 88532341 88532795 -108662637 + L1Md_F3 LINE L1 6127 6584 0 9 1260 1194 205 36 195 chr1 88532795 88533182 -108662250 + MTD LTR MaLR 56 377 -42 9 1260 235 159 23 0 chr1 88533318 88533362 -108662070 + B1_Mur2 SINE Alu 96 140 -9 9 1260 333 0 0 0 chr1 88533363 88533400 -108662032 + (CAA)n Simple_repeat Simple_repeat 1 37 0 1 1260 284 254 56 0 chr1 88533712 88533783 -108661649 - MIRb SINE MIR -159 109 35 1 1260 414 319 8 8 chr1 88534641 88534761 -108660671 + PB1D7 SINE Alu 1 120 0 1 1260 534 309 30 30 chr1 88534963 88535003 -108660429 + ID_B1 SINE B4 44 210 -14 1 1260 978 94 0 0 chr1 88535003 88535130 -108660302 + B1_Mus1 SINE Alu 8 134 -14 1 1260 189 0 0 0 chr1 88535130 88535151 -108660281 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1260 207 100 0 0 chr1 88535517 88535547 -108659885 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1260 447 273 57 8 chr1 88535734 88535856 -108659576 - MTD LTR MaLR 0 419 292 1 1260 543 292 25 20 chr1 88535872 88536071 -108659361 + Lx7 LINE L1 7165 7364 -332 1 1260 234 0 0 0 chr1 88536240 88536266 -108659166 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1260 1208 48 0 14 chr1 88536374 88536522 -108658910 - B1_Mm SINE Alu 0 147 2 1 1260 1150 227 79 26 chr1 88536561 88536864 -108658568 - MTD LTR MaLR -100 319 1 1 1260 543 262 40 33 chr1 88537528 88537678 -108657754 - RSINE1 SINE B4 -14 151 1 1 1260 800 241 128 9 chr1 88538327 88538553 -108656879 + Tigger5 DNA MER2_type 2148 2400 -6 1 1260 384 22 0 0 chr1 88538811 88538856 -108656576 + (TATG)n Simple_repeat Simple_repeat 3 47 0 1 1260 1148 62 0 0 chr1 88538876 88539022 -108656410 + B1_Mus1 SINE Alu 3 148 0 1 1260 1009 88 9 1 chr1 88539036 88539178 -108656254 - B2_Mm2 SINE B2 -63 153 2 1 1260 1326 90 39 0 chr1 88540817 88540995 -108654437 - B2_Mm2 SINE B2 -9 186 2 1 1260 353 308 43 0 chr1 88541036 88541153 -108654279 - MER5A1 DNA MER1_type -16 150 29 1 1260 234 242 153 71 chr1 88541171 88541269 -108654163 + MER5A1 DNA MER1_type 61 166 0 1 1260 23 54 0 0 chr1 88541378 88541415 -108654017 + AT_rich Low_complexity Low_complexity 1 37 0 1 1260 613 179 0 35 chr1 88541573 88541689 -108653743 - PB1D7 SINE Alu 0 120 9 1 1260 191 351 31 41 chr1 88541784 88541882 -108653550 - MIRc SINE MIR -20 248 152 1 1260 708 244 40 28 chr1 88542218 88542395 -108653037 - B3A SINE B2 -16 182 4 1 1260 234 313 0 0 chr1 88542421 88542488 -108652944 - L2a LINE L2 -27 3399 3333 1 1260 304 75 0 86 chr1 88542493 88542551 -108652881 - B3 SINE B2 -3 213 161 1 1260 202 56 111 0 chr1 88543392 88543428 -108652004 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 1 1260 332 322 103 0 chr1 88543428 88543574 -108651858 - RSINE1 SINE B4 -4 161 1 1 1260 315 0 0 0 chr1 88543600 88543635 -108651797 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1260 470 252 123 23 chr1 88543642 88543734 -108651698 + ID_B1 SINE B4 82 186 -38 1 1260 868 228 264 3 chr1 88543734 88544033 -108651399 + MTEa LTR MaLR 2 378 -1 1 1260 470 252 123 23 chr1 88544033 88544070 -108651362 + ID_B1 SINE B4 187 223 -1 1 1260 375 189 78 106 chr1 88544620 88544743 -108650689 + RMER10A LTR ERVL 3 122 -320 1 1260 396 40 0 0 chr1 88544743 88544793 -108650639 + (TCCCC)n Simple_repeat Simple_repeat 1 50 0 1 1260 440 304 93 65 chr1 88544793 88545050 -108650382 + RMER10A LTR ERVL 123 442 0 1 1260 230 290 72 0 chr1 88545422 88545491 -108649941 - MLT1E2 LTR MaLR -547 80 7 1 1260 477 0 0 0 chr1 88545660 88545713 -108649719 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1260 1294 91 11 0 chr1 88545725 88545900 -108649532 + B2_Mm1t SINE B2 3 179 -14 1 1260 379 94 19 12 chr1 88545932 88546036 -108649396 + B2_Mm2 SINE B2 47 187 -8 1 1260 682 280 119 91 chr1 88546313 88546631 -108648801 - MLT1A1 LTR MaLR -14 394 68 1 1260 359 248 116 31 chr1 88546848 88546977 -108648455 + MER5A DNA MER1_type 47 186 -3 1 1260 1597 26 10 16 chr1 88547494 88547686 -108647746 + B2_Mm1a SINE B2 1 191 -2 1 1260 400 244 386 8 chr1 88548382 88548514 -108646918 + B4A SINE B4 5 186 -106 1 1260 268 178 0 27 chr1 88548527 88548602 -108646830 + GA-rich Low_complexity Low_complexity 1 73 0 1 1260 313 338 73 13 chr1 88548610 88548760 -108646672 + HAL1-3A_ME LINE L1 2286 2444 -414 1 1260 300 338 75 14 chr1 88548778 88548925 -108646507 + HAL1-3A_ME LINE L1 2284 2439 -419 1 1260 315 173 0 36 chr1 88548925 88549009 -108646423 + G-rich Low_complexity Low_complexity 3 83 0 1 1260 273 299 105 14 chr1 88549270 88549407 -108646025 - L2a LINE L2 -1 3425 3240 1 1260 247 244 35 47 chr1 88549579 88549665 -108645767 - B1_Mus1 SINE Alu -54 94 10 1 1260 359 247 13 0 chr1 88549591 88549668 -108645764 - ID_B1 SINE B4 -60 164 87 1 1260 184 190 32 65 chr1 88550039 88550101 -108645331 - L2a LINE L2 -341 3085 3026 1 1260 550 222 0 0 chr1 88550820 88550919 -108644513 - B1F SINE Alu -50 99 1 1 1260 1713 16 5 0 chr1 88551336 88551528 -108643904 - B2_Mm1t SINE B2 0 193 1 1 1260 330 45 0 0 chr1 88552004 88552048 -108643384 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1260 465 325 53 89 chr1 88552546 88553050 -108642382 - L1MB8 LINE L1 -47 6131 5634 1 1260 656 259 149 43 chr1 88553203 88553526 -108641906 + ORR1E LTR MaLR 1 357 -2 1 1260 1109 51 0 0 chr1 88554028 88554166 -108641266 + B1_Mus1 SINE Alu 11 148 0 1 1260 444 305 113 134 chr1 88554389 88554558 -108640874 + MLT1A1 LTR MaLR 1 156 -252 1 1260 810 183 8 158 chr1 88554558 88554811 -108640621 - B3 SINE B2 0 216 2 1 1260 444 305 113 134 chr1 88554811 88555058 -108640374 + MLT1A1 LTR MaLR 157 408 0 1 1260 257 159 16 0 chr1 88555090 88555153 -108640279 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1260 394 213 0 126 chr1 88555380 88555579 -108639853 + GA-rich Low_complexity Low_complexity 3 176 0 1 1260 667 201 31 22 chr1 88556024 88556183 -108639249 + ID_B1 SINE B4 69 219 -73 1 1260 364 312 34 103 chr1 88556207 88556253 -108639179 + B4 SINE B4 67 191 -101 1 1260 638 222 0 0 chr1 88556253 88556370 -108639062 + B1_Mur1 SINE Alu 26 142 -7 1 1260 364 312 34 103 chr1 88556370 88556382 -108639050 + B4 SINE B4 192 229 -63 1 1260 640 252 7 0 chr1 88556527 88556674 -108638758 - B1F SINE Alu -1 148 1 1 1260 346 283 81 48 chr1 88557195 88557422 -108638010 + MTE2a LTR MaLR 1 272 -107 1 1260 327 191 0 0 chr1 88557536 88557604 -108637828 + GA-rich Low_complexity Low_complexity 3 70 0 1 1260 296 301 32 21 chr1 88557687 88557782 -108637650 + MLT1A1 LTR MaLR 291 386 -22 1 1260 306 0 0 0 chr1 88558355 88558389 -108637043 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1260 517 283 155 25 chr1 88558405 88558644 -108636788 - B4A SINE B4 -21 271 2 1 1260 40 37 0 0 chr1 88558653 88558707 -108636725 + AT_rich Low_complexity Low_complexity 1 54 0 1 1260 7905 43 8 14 chr1 88558787 88559751 -108635681 - L1_Mus2 LINE L1 0 6566 5608 1 1260 817 80 21 14 chr1 88559751 88559891 -108635541 - Lx3_Mus LINE L1 -20 6989 6849 1 1260 1384 53 0 6 chr1 88559898 88560069 -108635363 - Lx3_Mus LINE L1 -272 6737 6568 1 1260 677 260 158 88 chr1 88560588 88560781 -108634651 - MTEa LTR MaLR 0 379 166 1 1260 587 259 25 55 chr1 88560781 88560981 -108634451 - B3A SINE B2 0 198 5 1 1260 677 260 158 88 chr1 88560981 88561141 -108634291 - MTEa LTR MaLR -214 165 1 1 1260 198 0 0 0 chr1 88561237 88561259 -108634173 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1260 235 275 116 0 chr1 88561986 88562055 -108633377 - B1_Mur1 SINE Alu -19 130 54 1 1260 24 67 0 0 chr1 88562959 88563004 -108632428 + AT_rich Low_complexity Low_complexity 1 45 0 1 1260 31 58 0 0 chr1 88563136 88563188 -108632244 + AT_rich Low_complexity Low_complexity 1 52 0 1 1260 192 351 85 0 chr1 88563808 88563902 -108631530 + MIRb SINE MIR 135 236 -32 1 1260 459 0 0 0 chr1 88567798 88567849 -108627583 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1260 315 71 0 0 chr1 88569001 88569043 -108626389 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 1 1260 402 100 0 0 chr1 88569044 88569104 -108626328 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1260 554 243 60 13 chr1 88569113 88569263 -108626169 - RSINE1 SINE B4 -8 157 1 1 1260 487 234 119 93 chr1 88569682 88569875 -108625557 + B3A SINE B2 1 198 0 1 1260 235 163 0 39 chr1 88575741 88575792 -108619640 + (TTAGGG)n Simple_repeat Simple_repeat 2 50 0 1 1260 261 280 24 112 chr1 88575826 88575995 -108619437 + YREP_Mm Unknown Unknown 134 287 -1525 1 1260 632 282 7 0 chr1 88575881 88576023 -108619409 - B1F SINE Alu -6 143 1 1 1260 308 225 35 85 chr1 88576057 88576198 -108619234 - Lx7 LINE L1 0 7696 7563 1 1260 684 236 0 14 chr1 88576919 88577065 -108618367 - ID_B1 SINE B4 -1 223 80 1 1260 277 248 7 146 chr1 88576963 88577114 -108618318 - MT2B2 LTR ERVL -330 254 125 1 1260 205 250 0 39 chr1 88577177 88577281 -108618151 + T-rich Low_complexity Low_complexity 4 103 0 1 1260 234 361 40 32 chr1 88578444 88578570 -108616862 - L4 LINE RTE -998 1031 905 1 1260 313 294 112 54 chr1 88579069 88579274 -108616158 + L1M4b LINE L1 1705 1921 -5413 1 1260 306 0 0 0 chr1 88579304 88579338 -108616094 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1260 211 333 72 0 chr1 88579417 88579486 -108615946 - BC1_Mm scRNA scRNA -76 76 3 1 1260 375 279 66 36 chr1 88579471 88579638 -108615794 - MLT1A1 LTR MaLR -236 172 1 1 1260 662 247 35 117 chr1 88581029 88581116 -108614316 - MIR SINE MIR -21 241 164 1 1260 387 208 0 13 chr1 88581116 88581194 -108614238 - ID4_ SINE ID -3 80 4 1 1260 662 247 35 117 chr1 88581194 88581363 -108614069 - MIR SINE MIR -99 163 6 1 1260 608 211 12 20 chr1 88581780 88582032 -108613400 + CT-rich Low_complexity Low_complexity 1 249 0 1 1260 419 305 92 46 chr1 88582040 88582301 -108613131 - L1MC4 LINE L1 -4986 1229 957 1 1260 751 191 0 60 chr1 88582302 88582452 -108612980 - B1_Mus2 SINE Alu 0 147 7 1 1260 215 194 0 61 chr1 88582971 88582984 -108612448 + A-rich Low_complexity Low_complexity 1 13 0 1 1260 775 77 256 0 chr1 88582984 88583101 -108612331 + B1_Mm SINE Alu 1 147 0 1 1260 215 194 0 61 chr1 88583101 88583123 -108612309 + A-rich Low_complexity Low_complexity 14 35 0 1 1260 1201 35 7 0 chr1 88583123 88583264 -108612168 + B1_Mus1 SINE Alu 1 142 -6 2 1260 378 0 0 0 chr1 88583266 88583308 -108612124 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1260 215 194 0 61 chr1 88583308 88583334 -108612098 + A-rich Low_complexity Low_complexity 36 61 0 2 1260 197 212 20 50 chr1 88584724 88584792 -108610640 - MIR SINE MIR -67 201 127 2 1260 450 248 153 26 chr1 88585109 88585263 -108610169 - ID_B1 SINE B4 -44 180 5 2 1260 364 82 0 32 chr1 88585464 88585527 -108609905 + (TCC)n Simple_repeat Simple_repeat 3 63 0 2 1260 1200 114 23 6 chr1 88585542 88585719 -108609713 - B2_Mm2 SINE B2 -14 181 2 2 1260 477 270 0 0 chr1 88585721 88585810 -108609622 - PB1D10 SINE Alu -14 103 15 2 1260 414 0 0 0 chr1 88585849 88585895 -108609537 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1260 1012 265 48 22 chr1 88585895 88586158 -108609274 - B4 SINE B4 -20 272 3 2 1260 621 260 73 0 chr1 88586373 88586592 -108608840 - L1MA8 LINE L1 -5 6286 6052 2 1260 786 76 0 0 chr1 88586593 88586712 -108608720 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 2 1260 533 252 0 9 chr1 88586712 88586824 -108608608 - ID_B1 SINE B4 -9 215 105 2 1260 446 287 116 43 chr1 88586836 88587069 -108608363 - L1MA8 LINE L1 -253 6038 5789 2 1260 589 157 0 15 chr1 88587342 88587478 -108607954 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1260 486 0 0 0 chr1 88587487 88587541 -108607891 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1260 1570 209 35 0 chr1 88587541 88587886 -108607546 - L1MA8 LINE L1 -524 5776 5420 2 1260 804 238 0 0 chr1 88587895 88588042 -108607390 - ID_B1 SINE B4 0 224 78 2 1260 708 194 156 0 chr1 88588211 88588371 -108607061 + B3 SINE B2 32 216 0 2 1260 396 158 0 0 chr1 88588887 88588944 -108606488 + RMER15 LTR ERVL 1 57 -518 2 1260 320 175 0 5 chr1 88588980 88589045 -108606387 - B2_Mm2 SINE B2 -107 109 47 2 1260 1344 74 17 0 chr1 88589066 88589242 -108606190 - B2_Mm1t SINE B2 -14 179 1 2 1260 3309 119 45 19 chr1 88589246 88589760 -108605672 + RMER15 LTR ERVL 47 573 -2 2 1260 483 295 104 65 chr1 88589927 88590387 -108605045 + L1MB7 LINE L1 4914 5391 -755 2 1260 404 283 78 17 chr1 88590452 88590567 -108604865 + RSINE1 SINE B4 4 125 -40 2 1260 274 336 36 18 chr1 88590565 88590677 -108604755 + RSINE1 SINE B4 19 132 -33 2 1260 1316 246 96 81 chr1 88590815 88591358 -108604074 + L1MB7 LINE L1 5614 6164 -20 2 1260 1469 251 52 11 chr1 88591400 88591762 -108603670 - MTEa LTR MaLR 0 379 3 2 1260 3243 116 38 73 chr1 88591764 88592370 -108603062 + RMER4B LTR ERVK 1 585 0 2 1260 540 0 0 0 chr1 88592451 88592511 -108602921 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1260 396 0 0 0 chr1 88592679 88592723 -108602709 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1260 807 142 67 0 chr1 88592723 88592843 -108602589 - B1_Mur2 SINE Alu -10 139 12 2 1260 332 242 64 114 chr1 88592726 88592866 -108602566 - MT2B LTR ERVL -313 288 156 2 1260 321 286 58 110 chr1 88592869 88593042 -108602390 - L1MEg LINE L1 -3005 3141 2978 2 1260 288 357 33 59 chr1 88593652 88593804 -108601628 - LTR88c LTR Genie? -701 161 14 2 1260 291 264 0 19 chr1 88593888 88593996 -108601436 - L1MEg LINE L1 -3992 2250 2145 2 1260 492 276 117 0 chr1 88594344 88594489 -108600943 - RSINE1 SINE B4 -2 163 2 2 1260 234 315 94 83 chr1 88595085 88595217 -108600215 - MIR SINE MIR 0 262 133 2 1260 746 173 306 0 chr1 88595217 88595390 -108600042 - URR1A DNA MER1_type 0 226 1 2 1260 234 315 94 83 chr1 88595390 88595437 -108599995 - MIR SINE MIR -130 132 82 2 1260 250 191 0 0 chr1 88595858 88595905 -108599527 - ID_B1 SINE B4 -1 223 177 2 1260 440 260 118 73 chr1 88596012 88596232 -108599200 + B4A SINE B4 7 236 -56 2 1260 333 47 0 0 chr1 88596255 88596298 -108599134 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1260 288 0 0 0 chr1 88596298 88596329 -108599103 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1260 950 198 46 25 chr1 88596429 88596626 -108598806 - B3 SINE B2 -12 204 4 2 1260 588 53 0 0 chr1 88596732 88596808 -108598624 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 2 1260 944 252 153 3 chr1 88597623 88597930 -108597502 + MLT1A0 LTR MaLR 10 362 -3 2 1260 587 341 122 8 chr1 88598404 88598728 -108596704 + MLT1A0 LTR MaLR 1 408 0 2 1260 405 0 0 0 chr1 88601835 88601880 -108593552 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1260 277 320 66 66 chr1 88602080 88602321 -108593111 - L2 LINE L2 -338 3081 2841 2 1260 465 66 0 0 chr1 88602499 88602560 -108592872 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1260 449 226 58 10 chr1 88602563 88602666 -108592766 - RSINE1 SINE B4 -55 110 3 2 1260 539 275 154 10 chr1 88602944 88603139 -108592293 + B4A SINE B4 3 225 -67 2 1260 506 332 86 35 chr1 88603507 88603871 -108591561 - L1MEc LINE L1 -2448 3871 3491 2 1260 254 114 0 0 chr1 88603913 88603948 -108591484 + U2 snRNA snRNA 1 35 -153 2 1260 563 293 23 75 chr1 88604000 88604306 -108591126 - B4A SINE B4 0 292 3 2 1260 411 21 0 0 chr1 88604314 88604362 -108591070 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2 157 511 232 180 93 chr1 88604447 88605164 -108590268 - L1MEc LINE L1 -4552 1848 1070 2 1261 446 240 81 62 chr1 88605213 88605373 -108590059 - RSINE1 SINE B4 0 165 3 2 1261 2403 54 0 3 chr1 88605893 88606191 -108589241 - L1Md_F2 LINE L1 0 6582 6286 2 1261 1121 102 7 0 chr1 88606771 88606918 -108588514 - B1_Mus1 SINE Alu 0 148 1 2 1261 426 152 62 12 chr1 88607011 88607091 -108588341 - B2_Mm2 SINE B2 -87 108 25 2 1261 969 211 19 32 chr1 88607210 88607426 -108588006 - B3 SINE B2 -3 213 1 2 1261 409 275 25 107 chr1 88607470 88607629 -108587803 - B4 SINE B4 -146 146 1 2 1261 348 24 0 0 chr1 88608226 88608267 -108587165 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1261 983 241 0 0 chr1 88608285 88608472 -108586960 - B3 SINE B2 -27 189 3 2 1261 299 145 15 61 chr1 88608586 88608652 -108586780 - MER2 DNA MER2_type -188 157 95 2 1261 1652 210 80 13 chr1 88608726 88609103 -108586329 - MLT1C LTR MaLR -31 436 35 2 1261 973 298 25 11 chr1 88609982 88610257 -108585175 - B4 SINE B4 -4 288 10 2 1261 450 267 67 0 chr1 88610259 88610379 -108585053 + MER2 DNA MER2_type 202 329 -16 2 1261 1657 36 0 0 chr1 88610616 88610808 -108584624 - B2_Mm1a SINE B2 0 193 2 2 1261 5399 62 4 10 chr1 88610817 88611515 -108583917 - L1_Mus3 LINE L1 0 6638 5945 2 1261 836 145 80 0 chr1 88611866 88612004 -108583428 - B1_Mur3 SINE Alu 0 149 1 2 1261 839 280 171 42 chr1 88612027 88612675 -108582757 - L1MD2 LINE L1 -2 6357 5626 2 1261 244 250 98 36 chr1 88612743 88612855 -108582577 - L1MC4 LINE L1 -124 7918 7800 2 1261 355 327 69 6 chr1 88613016 88613176 -108582256 - MIR SINE MIR -87 175 6 2 1261 6358 138 55 19 chr1 88613449 88614530 -108580902 - Lx4B LINE L1 -4 7054 5935 2 1261 324 0 0 0 chr1 88617506 88617542 -108577890 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1261 529 270 15 16 chr1 88617589 88617745 -108577687 - B4 SINE B4 -97 195 41 2 1261 501 293 19 32 chr1 88617894 88618061 -108577371 - B4 SINE B4 -170 122 3 2 1261 309 255 19 48 chr1 88618116 88618219 -108577213 + PB1D10 SINE Alu 3 102 -15 2 1261 294 284 54 0 chr1 88618264 88618338 -108577094 + ID4_ SINE ID 1 78 -5 2 1261 189 0 0 0 chr1 88618338 88618359 -108577073 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 2 1261 601 219 32 0 chr1 88618601 88618724 -108576708 - B1F SINE Alu -21 128 2 2 1261 557 245 42 11 chr1 88618776 88618959 -108576473 - MTD LTR MaLR 0 419 203 2 1261 1217 48 0 0 chr1 88619366 88619513 -108575919 - B1_Mm SINE Alu 0 147 1 2 1261 886 212 98 0 chr1 88620424 88620617 -108574815 + B3 SINE B2 1 212 -4 2 1261 995 25 8 0 chr1 88620672 88620794 -108574638 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 2 1261 727 232 87 0 chr1 88620832 88620970 -108574462 + RSINE1 SINE B4 2 151 -14 2 1261 333 0 0 0 chr1 88620971 88621008 -108574424 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1261 682 279 80 42 chr1 88621046 88621308 -108574124 + B4 SINE B4 9 280 -12 2 1261 32 0 0 0 chr1 88621351 88621383 -108574049 + AT_rich Low_complexity Low_complexity 1 32 0 2 1261 4775 41 70 5 chr1 88621383 88622000 -108573432 - Lx3_Mus LINE L1 -7 7002 6346 2 1261 4199 61 2 19 chr1 88622001 88622654 -108572778 + Lx3_Mus LINE L1 5330 5967 -1042 2 1261 489 76 0 0 chr1 88622852 88622918 -108572514 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1261 295 256 32 32 chr1 88622945 88623038 -108572394 - B1F SINE Alu -20 129 37 2 1261 714 265 122 11 chr1 88623148 88623591 -108571841 - L1MC4 LINE L1 -658 7384 6893 2 1261 695 281 6 0 chr1 88623602 88623766 -108571666 - MER58A DNA MER1_type -9 215 51 2 1261 414 291 0 52 chr1 88623804 88623920 -108571512 - PB1D10 SINE Alu -2 115 6 2 1261 261 0 0 0 chr1 88623995 88624024 -108571408 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 2 1261 16007 160 49 55 chr1 88624063 88625747 -108569685 - Lx5 LINE L1 -9 7041 5362 2 1261 1188 62 0 0 chr1 88625747 88625893 -108569539 - B1_Mm SINE Alu 0 147 2 2 1261 16007 118 28 95 chr1 88625893 88627059 -108568373 - Lx5 LINE L1 -516 5361 4210 2 1261 1414 120 103 0 chr1 88627059 88627301 -108568131 - Lx2A LINE L1 -2 7006 6740 2 1261 16007 118 28 95 chr1 88627301 88627478 -108567954 - L1_Mur2 LINE L1 -1668 4209 4209 2 1261 1398 59 48 0 chr1 88627478 88627664 -108567768 - B2_Mm2 SINE B2 0 195 1 2 1261 16007 118 28 95 chr1 88627664 88627956 -108567476 - Lx5 LINE L1 -1668 4209 3919 2 1261 426 65 0 0 chr1 88627956 88628018 -108567414 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1261 2177 43 32 7 chr1 88628025 88628306 -108567126 - L1_Mus2 LINE L1 0 6566 6279 3 1261 16007 118 28 95 chr1 88628306 88629455 -108565977 - Lx5 LINE L1 -1959 3918 2746 2 1261 955 241 140 18 chr1 88629454 88629890 -108565542 - L1MA8 LINE L1 -34 6257 5769 3 1261 1198 258 52 74 chr1 88629885 88630482 -108564950 - L1MA8 LINE L1 -830 5482 4900 3 1261 1225 73 102 0 chr1 88630482 88630659 -108564773 - B2_Mm2 SINE B2 0 195 1 3 1261 1198 266 66 100 chr1 88630659 88630833 -108564599 - L1MA8 LINE L1 -1244 4899 4730 3 1261 320 315 147 0 chr1 88631393 88631536 -108563896 - L1MEf LINE L1 -4539 2563 2400 3 1261 1546 154 28 100 chr1 88631546 88631935 -108563497 - RMER1B Other Other -16 1050 690 3 1261 420 293 110 50 chr1 88631934 88632397 -108563035 - L1MEf LINE L1 -4723 2379 1889 3 1261 774 197 120 10 chr1 88632449 88632649 -108562783 - Lx5 LINE L1 -5 7045 6824 3 1261 1335 68 15 25 chr1 88632801 88632997 -108562435 - B2_Mm2 SINE B2 -1 194 1 3 1261 499 281 59 0 chr1 88633224 88633359 -108562073 + RSINE1 SINE B4 2 144 -21 3 1261 364 202 81 0 chr1 88633413 88633537 -108561895 + L1MEg LINE L1 783 916 -5168 3 1261 518 275 87 11 chr1 88633614 88633879 -108561553 + L1MEg LINE L1 1049 1333 -4751 3 1261 226 296 70 0 chr1 88633974 88634045 -108561387 - MER3 DNA MER1_type -114 95 20 3 1261 263 234 108 15 chr1 88634067 88634132 -108561300 + ID4_ SINE ID 3 73 -10 3 1261 505 258 120 3 chr1 88634340 88634420 -108561012 - L1M4 LINE L1 -2542 3604 3512 3 1261 216 0 0 0 chr1 88634420 88634444 -108560988 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1261 505 258 120 3 chr1 88634444 88634647 -108560785 - L1M4 LINE L1 -2635 3511 3288 3 1261 255 269 15 15 chr1 88634902 88634970 -108560462 - LTR52 LTR ERVL -305 116 49 3 1261 366 295 116 37 chr1 88635023 88635403 -108560029 - L1MEf LINE L1 -5553 1781 1372 3 1261 561 30 0 0 chr1 88635421 88635488 -108559944 + (TTCTC)n Simple_repeat Simple_repeat 3 69 0 3 1261 783 191 8 16 chr1 88635488 88635744 -108559688 + C-rich Low_complexity Low_complexity 1 253 0 3 1261 244 214 54 33 chr1 88636089 88636181 -108559251 + CT-rich Low_complexity Low_complexity 5 98 0 3 1261 355 267 92 37 chr1 88636181 88636290 -108559142 - PB1D9 SINE Alu 0 120 6 3 1261 345 243 18 53 chr1 88636363 88636476 -108558956 - ID_B1 SINE B4 0 224 116 3 1261 823 191 122 0 chr1 88638061 88638249 -108557183 - ORR1C2 LTR MaLR 0 384 174 3 1261 554 164 19 70 chr1 88638250 88638630 -108556802 + GA-rich Low_complexity Low_complexity 1 360 0 3 1261 222 37 0 0 chr1 88638661 88638688 -108556744 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 3 1261 913 152 55 55 chr1 88638688 88638859 -108556573 - ORR1C2 LTR MaLR -208 176 5 3 1261 929 289 86 53 chr1 88640661 88641055 -108554377 - RLTR17 LTR ERVK -175 517 111 3 1261 456 275 207 13 chr1 88642843 88643075 -108552357 + B4 SINE B4 2 278 -14 3 1261 467 267 129 8 chr1 88643581 88643713 -108551719 + B1_Mur2 SINE Alu 2 149 0 3 1261 953 226 28 0 chr1 88645274 88645451 -108549981 + B3 SINE B2 2 183 -33 3 1261 441 0 0 0 chr1 88645452 88645501 -108549931 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1261 598 140 46 18 chr1 88646060 88646169 -108549263 - RLTR25B LTR ERVK 0 1028 917 3 1261 3829 131 68 39 chr1 88646167 88646493 -108548939 - RLTR25B LTR ERVK -298 730 400 3 1261 273 29 0 0 chr1 88646493 88646527 -108548905 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 1261 3829 131 68 39 chr1 88646527 88646910 -108548522 - RLTR25B LTR ERVK -629 399 1 3 1261 212 260 370 31 chr1 88647464 88647633 -108547799 + MIR SINE MIR 7 232 -30 3 1261 938 118 22 0 chr1 88647760 88647895 -108547537 + B1_Mus1 SINE Alu 1 138 -10 3 1261 387 0 0 0 chr1 88647895 88647938 -108547494 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1261 22 0 0 0 chr1 88649087 88649109 -108546323 + AT_rich Low_complexity Low_complexity 1 22 0 3 1261 402 99 0 0 chr1 88649128 88649199 -108546233 + L1Md_F2 LINE L1 6512 6582 0 3 1261 239 333 33 22 chr1 88649381 88649473 -108545959 + L2b LINE L2 3283 3375 0 3 1261 21 0 0 0 chr1 88650988 88651009 -108544423 + AT_rich Low_complexity Low_complexity 1 21 0 3 1261 198 0 0 0 chr1 88651515 88651537 -108543895 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1261 282 327 105 69 chr1 88651948 88652224 -108543208 + MamRep137 DNA TcMar? 5 290 -154 3 1261 743 245 25 54 chr1 88652449 88652652 -108542780 + B3A SINE B2 2 198 0 3 1261 714 188 34 20 chr1 88654423 88654570 -108540862 - B1_Mur3 SINE Alu 0 149 1 3 1261 247 258 147 13 chr1 88655724 88655881 -108539551 - Lx9 LINE L1 -121 7523 7346 3 1261 808 238 0 6 chr1 88655900 88656065 -108539367 - Lx9 LINE L1 -1076 6568 6405 3 1261 1231 34 14 0 chr1 88656226 88656373 -108539059 - B1_Mur4 SINE Alu 0 150 2 3 1261 1247 94 28 0 chr1 88656559 88656739 -108538693 - B2_Mm1t SINE B2 -5 188 4 3 1261 498 269 95 11 chr1 88657944 88658207 -108537225 + L1ME1 LINE L1 1207 1491 -4751 3 1261 226 296 70 0 chr1 88658302 88658373 -108537059 - MER3 DNA MER1_type -114 95 20 3 1261 263 234 108 15 chr1 88658395 88658460 -108536972 + ID4_ SINE ID 3 73 -10 3 1261 347 264 51 74 chr1 88658686 88658906 -108536526 - RLTR10D LTR ERVK 0 411 142 3 1261 454 193 0 0 chr1 88658918 88659001 -108536431 - RLTR10D LTR ERVK -276 83 1 3 1261 356 318 29 32 chr1 88659016 88659331 -108536101 + L1ME1 LINE L1 3631 3953 -2193 3 1261 245 219 203 0 chr1 88659331 88659395 -108536037 + PB1D10 SINE Alu 27 103 -14 3 1261 302 252 10 0 chr1 88659669 88659768 -108535664 + (TATATG)n Simple_repeat Simple_repeat 1 100 0 3 1261 367 206 0 0 chr1 88659836 88659904 -108535528 + Lx6 LINE L1 6667 6734 -726 3 1261 318 272 64 30 chr1 88659937 88660197 -108535235 + L1ME1 LINE L1 4217 4487 -1659 3 1261 832 235 136 15 chr1 88660568 88661103 -108534329 + L1ME1 LINE L1 5068 5664 -515 3 1261 303 279 44 52 chr1 88662285 88662421 -108533011 + L1ME1 LINE L1 6034 6168 -11 3 1261 389 316 0 0 chr1 88662490 88662588 -108532844 - MER5A DNA MER1_type -83 106 9 3 1261 185 314 34 34 chr1 88663801 88663890 -108531542 - L2c LINE L2 -31 3356 3268 3 1261 671 276 36 116 chr1 88664262 88664512 -108530920 + B4A SINE B4 2 231 -61 3 1261 687 232 14 7 chr1 88664513 88664656 -108530776 + B1_Mus2 SINE Alu 2 145 -2 3 1261 1215 93 60 5 chr1 88664711 88664895 -108530537 - B2_Mm2 SINE B2 0 195 2 3 1261 269 156 22 0 chr1 88664916 88664961 -108530471 - tRNA-Val-GTY tRNA tRNA -3 73 28 3 1261 513 0 0 0 chr1 88665049 88665106 -108530326 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1261 207 114 0 0 chr1 88665224 88665259 -108530173 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1261 22 0 0 0 chr1 88665771 88665793 -108529639 + AT_rich Low_complexity Low_complexity 1 22 0 3 1261 432 0 0 0 chr1 88668718 88668766 -108526666 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1261 24 0 0 0 chr1 88669915 88669939 -108525493 + AT_rich Low_complexity Low_complexity 1 24 0 3 1261 607 286 19 37 chr1 88670714 88670928 -108524504 + ID_B1 SINE B4 1 210 -14 3 1261 366 42 0 0 chr1 88670929 88670977 -108524455 + (CAA)n Simple_repeat Simple_repeat 2 49 0 3 1261 432 0 0 0 chr1 88671031 88671079 -108524353 + (TATG)n Simple_repeat Simple_repeat 3 50 0 3 1261 462 295 0 9 chr1 88671087 88671193 -108524239 - RSINE1 SINE B4 -57 108 4 3 1261 755 251 19 16 chr1 88671464 88671650 -108523782 - ID_B1 SINE B4 -55 237 50 3 1261 546 133 0 0 chr1 88671712 88671802 -108523630 + L1Md_F2 LINE L1 248 337 -6282 3 1261 31541 70 3 1 chr1 88671795 88676714 -108518718 + L1Md_F2 LINE L1 563 5589 -297 3 1261 8217 42 1 4 chr1 88676714 88677713 -108517719 + L1Md_F2 LINE L1 5590 6585 0 3 1261 437 287 64 0 chr1 88677928 88678085 -108517347 - MER105 DNA DNA -34 170 4 3 1261 412 133 83 12 chr1 88678387 88678471 -108516961 - MLT1A1 LTR MaLR 0 408 319 3 1261 362 277 212 15 chr1 88679094 88679226 -108516206 + MER5A1 DNA MER1_type 9 166 0 3 1261 577 157 0 17 chr1 88679585 88679702 -108515730 + GA-rich Low_complexity Low_complexity 1 115 0 3 1261 1934 267 90 33 chr1 88680266 88681264 -108514168 - L1_Mur3 LINE L1 -898 4982 3928 3 1261 232 250 32 154 chr1 88681420 88681576 -108513856 + L1M2 LINE L1 4711 4847 -1296 3 1261 274 289 33 58 chr1 88681578 88681699 -108513733 - B4 SINE B4 -157 135 18 3 1261 1060 259 135 20 chr1 88681711 88682303 -108513129 - L1_Mur3 LINE L1 -1966 3914 3255 3 1261 15777 121 19 22 chr1 88682338 88685935 -108509497 - L1_Mus3 LINE L1 -2 6636 3059 3 1261 1058 135 6 0 chr1 88685935 88686113 -108509319 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1261 13485 171 32 30 chr1 88686113 88686286 -108509146 - L1_Mus3 LINE L1 -2819 3058 2860 3 1261 1980 113 44 44 chr1 88686403 88686763 -108508669 - Lx LINE L1 0 6654 6295 3 1261 847 223 80 10 chr1 88686816 88687015 -108508417 + B3 SINE B2 1 213 -3 3 1261 333 132 38 0 chr1 88687033 88687086 -108508346 + B3 SINE B2 2 56 -160 3 1261 1248 97 29 0 chr1 88687087 88687262 -108508170 + B2_Mm2 SINE B2 2 181 -14 3 1261 209 250 157 56 chr1 88687270 88687359 -108508073 - L2c LINE L2 -250 3137 3040 3 1261 210 297 76 38 chr1 88687537 88687642 -108507790 + L2b LINE L2 3258 3366 -9 3 1261 279 151 13 40 chr1 88687895 88687971 -108507461 + CT-rich Low_complexity Low_complexity 3 76 0 3 1261 528 209 164 9 chr1 88687971 88688087 -108507345 - ID_B1 SINE B4 -41 183 50 3 1261 277 94 56 19 chr1 88688083 88688137 -108507295 - MER21B LTR ERV1 -381 482 427 3 1261 282 29 0 0 chr1 88688322 88688357 -108507075 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1261 789 200 115 10 chr1 88689099 88689268 -108506164 + B3 SINE B2 5 180 -15 3 1261 282 274 10 10 chr1 88689760 88689856 -108505576 + L1ME3A LINE L1 6045 6140 -33 3 1261 827 200 25 7 chr1 88689952 88690127 -108505305 - B3 SINE B2 -8 187 2 3 1261 264 59 0 0 chr1 88690950 88690984 -108504448 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 3 1261 625 197 91 45 chr1 88690985 88691139 -108504293 - RSINE1 SINE B4 0 165 5 3 1261 238 269 0 82 chr1 88691624 88691638 -108503794 + B4 SINE B4 77 84 -208 3 1261 415 197 45 85 chr1 88691638 88691806 -108503626 + PB1D9 SINE Alu 1 143 -6 3 1261 248 77 26 0 chr1 88691806 88691845 -108503587 + (CAACC)n Simple_repeat Simple_repeat 4 43 0 3 1261 481 47 0 105 chr1 88692004 88692099 -108503333 - L1Md_F3 LINE L1 0 6584 6500 3 1261 468 0 0 0 chr1 88693239 88693291 -108502141 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 3 1261 1151 112 0 6 chr1 88693291 88693471 -108501961 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 1261 964 88 81 0 chr1 88693494 88693630 -108501802 - B1_Mus2 SINE Alu 0 147 1 3 1261 204 40 0 0 chr1 88693725 88693750 -108501682 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1261 260 53 26 0 chr1 88693805 88693843 -108501589 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1261 306 0 0 0 chr1 88694203 88694237 -108501195 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1261 623 324 96 40 chr1 88694238 88694489 -108500943 - B4 SINE B4 -26 266 2 4 1261 25 0 0 0 chr1 88694756 88694781 -108500651 + AT_rich Low_complexity Low_complexity 1 25 0 4 1261 4007 127 41 16 chr1 88695130 88695984 -108499448 - Lx3C LINE L1 -978 5998 5096 4 1261 3666 112 8 13 chr1 88695981 88696581 -108498851 + L1_Mur2 LINE L1 3353 3949 -1928 4 1261 1228 228 96 119 chr1 88696581 88697056 -108498376 + RCHARR1 DNA MER1_type 378 850 -124 4 1261 671 238 7 7 chr1 88697056 88697200 -108498232 + B1F SINE Alu 2 145 -4 4 1261 1228 228 96 119 chr1 88697200 88697331 -108498101 + RCHARR1 DNA MER1_type 851 970 -4 4 1261 262 358 91 55 chr1 88697341 88697560 -108497872 + MLT1K LTR MaLR 187 413 -182 4 1261 477 0 0 0 chr1 88697580 88697633 -108497799 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1261 315 0 0 0 chr1 88697633 88697667 -108497765 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1261 243 0 0 0 chr1 88697667 88697694 -108497738 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1261 301 143 22 56 chr1 88698512 88698601 -108496831 - Lx2 LINE L1 -2 6995 6910 4 1261 232 284 0 29 chr1 88698620 88698725 -108496707 + T-rich Low_complexity Low_complexity 1 102 0 4 1261 1627 32 0 0 chr1 88698744 88698932 -108496500 - B2_Mm1a SINE B2 -5 188 1 4 1261 917 271 15 0 chr1 88699339 88699542 -108495890 + B3 SINE B2 3 208 -8 4 1261 2177 168 10 31 chr1 88699832 88700218 -108495214 - ORR1C1 LTR MaLR 0 378 1 4 1261 623 265 0 20 chr1 88700387 88700537 -108494895 + RSINE1 SINE B4 2 148 -17 4 1261 264 336 77 17 chr1 88700579 88700879 -108494553 + L1M2 LINE L1 2310 2627 -4222 4 1261 1864 300 116 55 chr1 88701009 88702566 -108492866 + L1M2 LINE L1 2836 4488 -2357 4 1261 3643 151 16 16 chr1 88702558 88703680 -108491752 + L1VL4 LINE L1 149 1271 -2288 4 1261 5695 101 1 2 chr1 88703703 88705097 -108490335 + L1_Mus3 LINE L1 4961 6352 -286 4 1261 494 176 12 12 chr1 88705101 88705187 -108490245 - URR1B DNA MER1_type -139 86 1 4 1261 942 302 49 16 chr1 88705189 88705744 -108489688 + L1M2 LINE L1 4238 4810 -1333 4 1261 595 351 16 23 chr1 88705929 88706232 -108489200 - Lx9 LINE L1 -201 7443 7143 4 1261 1125 89 7 0 chr1 88706244 88706390 -108489042 - B1_Mus1 SINE Alu 0 148 2 4 1261 397 200 29 0 chr1 88706471 88706541 -108488891 - B3A SINE B2 -30 168 97 4 1261 2005 200 57 3 chr1 88706546 88706932 -108488500 - MTD LTR MaLR -8 411 5 4 1261 334 298 0 60 chr1 88706955 88707055 -108488377 - B2_Mm2 SINE B2 -101 94 1 4 1261 1104 321 47 6 chr1 88707063 88707555 -108487877 - Lx8 LINE L1 -469 7004 6493 4 1261 342 103 0 0 chr1 88707555 88707613 -108487819 + RMER19B LTR ERVK 1 58 -844 4 1261 261 335 90 52 chr1 88707774 88708108 -108487324 - L2 LINE L2 -383 3036 2689 4 1261 333 0 0 0 chr1 88708108 88708145 -108487287 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1261 261 335 90 52 chr1 88708145 88708178 -108487254 - L2 LINE L2 -731 2688 2655 4 1261 247 288 15 0 chr1 88708784 88708850 -108486582 + CT-rich Low_complexity Low_complexity 3 69 0 4 1261 190 328 15 15 chr1 88709710 88709778 -108485654 - L2a LINE L2 -12 3414 3347 4 1261 262 316 138 35 chr1 88710097 88710271 -108485161 + MIRc SINE MIR 30 221 -47 4 1261 907 58 0 28 chr1 88710328 88710469 -108484963 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 4 1261 276 254 0 0 chr1 88711688 88711759 -108483673 - L1MC5 LINE L1 -847 7114 7044 4 1261 472 243 11 31 chr1 88711780 88711935 -108483497 - L1MC5 LINE L1 -1074 6968 6736 4 1261 369 315 35 18 chr1 88712082 88712195 -108483237 - RSINE1 SINE B4 -1 164 50 4 1261 189 0 0 0 chr1 88712399 88712420 -108483012 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 1261 285 86 17 33 chr1 88712421 88712481 -108482951 + (TCCCC)n Simple_repeat Simple_repeat 4 62 0 4 1261 386 96 0 14 chr1 88712484 88712558 -108482874 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 4 1261 490 316 100 54 chr1 88712561 88712822 -108482610 - B4A SINE B4 -19 273 1 4 1261 393 264 36 108 chr1 88713592 88713614 -108481818 - B2_Mm2 SINE B2 -14 181 166 4 1261 237 83 0 0 chr1 88713614 88713650 -108481782 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1261 457 264 36 108 chr1 88713650 88713822 -108481610 - B3 SINE B2 -34 182 1 4 1261 6908 82 15 12 chr1 88714369 88715395 -108480037 - Lx3A LINE L1 -74 5812 4784 4 1261 2346 84 12 56 chr1 88715394 88715822 -108479610 + Lx3A LINE L1 5838 6246 -735 4 1261 1988 98 40 19 chr1 88715822 88716146 -108479286 + IAPEY_LTR LTR ERVK 55 385 0 4 1261 476 18 0 0 chr1 88716151 88716208 -108479224 - IAPEY3-int LTR ERVK -2430 5250 5194 4 1261 4867 81 75 11 chr1 88716208 88716893 -108478539 + Lx3A LINE L1 6241 6971 -10 4 1261 441 95 0 0 chr1 88716893 88716956 -108478476 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 4 1261 4867 81 75 11 chr1 88716956 88716967 -108478465 + Lx3A LINE L1 6972 6981 0 4 1261 233 247 50 40 chr1 88717036 88717137 -108478295 - L1M2c LINE L1 -5115 1674 1573 4 1261 365 233 0 14 chr1 88720684 88720758 -108474674 + ID4 SINE ID 3 75 -8 4 1261 24 32 0 0 chr1 88721463 88721494 -108473938 + AT_rich Low_complexity Low_complexity 1 31 0 4 1261 274 357 59 65 chr1 88721830 88721983 -108473449 - ID_B1 SINE B4 -69 155 4 4 1261 446 341 97 52 chr1 88722290 88722921 -108472511 - L1MC LINE L1 -2252 3894 3240 4 1261 382 309 35 56 chr1 88723005 88723149 -108472283 - B1F1 SINE Alu -8 141 1 4 1261 248 158 0 0 chr1 88723340 88723378 -108472054 - ID4 SINE ID -44 39 2 4 1261 23 0 0 0 chr1 88723917 88723940 -108471492 + AT_rich Low_complexity Low_complexity 1 23 0 4 1261 211 111 0 27 chr1 88724554 88724591 -108470841 + (TCC)n Simple_repeat Simple_repeat 3 38 0 4 1261 541 255 65 118 chr1 88724715 88724884 -108470548 + RSINE1 SINE B4 6 165 0 4 1261 9985 79 2 10 chr1 88725242 88727364 -108468068 + L1Md_A LINE L1 440 2541 -3342 4 1261 30 0 0 0 chr1 88727372 88727402 -108468030 + AT_rich Low_complexity Low_complexity 1 30 0 4 1261 219 341 24 0 chr1 88727437 88727522 -108467910 - MIR3 SINE MIR -51 157 71 4 1261 417 305 149 0 chr1 88727775 88727949 -108467483 + MER3 DNA MER1_type 10 209 0 4 1261 374 355 64 6 chr1 88728111 88728284 -108467148 + MLT1L LTR MaLR 417 599 -11 4 1261 180 299 82 0 chr1 88728403 88728500 -108466932 + MIRm SINE MIR 52 156 -120 4 1261 28 0 0 0 chr1 88730051 88730079 -108465353 + AT_rich Low_complexity Low_complexity 1 28 0 4 1261 689 313 100 31 chr1 88731311 88731825 -108463607 - MLT1F2 LTR MaLR 0 627 1 4 1261 181 313 49 56 chr1 88733482 88733624 -108461808 + L2 LINE L2 2336 2476 -943 4 1261 291 389 27 55 chr1 88733706 88733926 -108461506 + MIRc SINE MIR 3 216 -52 4 1261 230 244 0 0 chr1 88734660 88734705 -108460727 + polypyrimidine Low_complexity Low_complexity 2 46 0 4 1261 421 265 101 101 chr1 88734958 88735147 -108460285 - MER5A DNA MER1_type 0 189 1 4 157 4031 168 64 1 chr1 88735324 88736028 -108459404 - Lx5 LINE L1 -5 7045 6298 4 1262 772 105 0 0 chr1 88736030 88736144 -108459288 + Lx5 LINE L1 5745 5858 -1192 4 1262 285 341 51 29 chr1 88736149 88736324 -108459108 + L2 LINE L2 2717 2895 -524 4 1262 612 0 0 0 chr1 88736382 88736450 -108458982 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 1262 902 257 49 0 chr1 88736462 88736645 -108458787 + ID_B1 SINE B4 18 209 -15 4 1262 338 348 88 62 chr1 88736759 88737099 -108458333 + ORR1D2 LTR MaLR 22 370 0 4 1262 1625 297 143 28 chr1 88737099 88737785 -108457647 + ORR1D2-int LTR MaLR 1 765 -815 4 1262 976 151 79 45 chr1 88737794 88737998 -108457434 + MTC LTR MaLR 1 209 -212 4 1262 1365 94 5 0 chr1 88737998 88738189 -108457243 + B2_Mm1a SINE B2 2 193 0 4 1262 654 237 64 115 chr1 88738189 88738218 -108457214 + MTC LTR MaLR 195 222 -185 4 1262 270 206 0 0 chr1 88738218 88738286 -108457146 + GA-rich Low_complexity Low_complexity 2 69 0 4 1262 705 183 8 0 chr1 88738289 88738420 -108457012 + MTC LTR MaLR 194 325 -96 4 1262 608 143 0 10 chr1 88738549 88738648 -108456784 + MTC LTR MaLR 319 416 -5 4 1262 1650 313 95 76 chr1 88738656 88739383 -108456049 + ORR1D2-int LTR MaLR 770 1510 -70 4 1262 584 206 103 0 chr1 88739380 88739506 -108455926 - MTC LTR MaLR -220 201 63 4 1262 6477 63 3 5 chr1 88739506 88740368 -108455064 - L1_Mus1 LINE L1 -2 6565 5705 4 1262 2982 64 0 0 chr1 88740366 88740757 -108454675 + L1_Mus1 LINE L1 5321 5711 -172 4 1262 226 246 49 0 chr1 88740761 88740822 -108454610 - B4A SINE B4 -228 64 1 4 1262 520 142 43 78 chr1 88740822 88740925 -108454507 - MTC LTR MaLR -322 99 1 4 1262 547 299 91 77 chr1 88740973 88741259 -108454173 + ORR1E LTR MaLR 3 292 -67 4 1262 210 242 127 16 chr1 88741430 88741493 -108453939 + B4A SINE B4 74 143 -149 4 1262 293 317 0 0 chr1 88741448 88741530 -108453902 + PB1D7 SINE Alu 14 95 -25 4 1262 930 233 15 35 chr1 88742909 88743109 -108452323 + B3 SINE B2 16 211 -5 4 1262 919 229 37 156 chr1 88743438 88743895 -108451537 - RLTR11B LTR ERVK -60 467 1 4 1262 853 252 48 0 chr1 88744027 88744233 -108451199 - B3 SINE B2 0 216 1 4 1262 331 246 0 0 chr1 88744262 88744323 -108451109 - ID4 SINE ID -1 82 22 4 1262 4114 52 0 0 chr1 88744369 88744957 -108450475 - L1_Mus1 LINE L1 -622 5944 5357 4 1262 4902 75 0 6 chr1 88744958 88745598 -108449834 + L1_Mus1 LINE L1 5932 6567 0 4 1262 1323 31 0 0 chr1 88745834 88745993 -108449439 + B2_Mm1a SINE B2 2 160 -33 4 1262 495 0 0 0 chr1 88745993 88746048 -108449384 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 4 1262 717 259 6 47 chr1 88746260 88746430 -108449002 + RSINE1 SINE B4 3 165 0 4 1262 25 0 0 0 chr1 88746468 88746493 -108448939 + AT_rich Low_complexity Low_complexity 1 25 0 4 1262 196 131 21 21 chr1 88746745 88746792 -108448640 + CT-rich Low_complexity Low_complexity 1 47 0 4 1262 438 295 21 14 chr1 88747016 88747157 -108448275 - MLT1J LTR MaLR 0 512 371 4 1262 571 340 72 28 chr1 88747229 88747480 -108447952 - MLT1J LTR MaLR -248 264 3 4 1262 344 169 21 126 chr1 88748933 88748947 -108446485 + MT2B2 LTR ERVL 154 157 -427 4 1262 510 240 13 10 chr1 88748947 88749069 -108446363 + PB1D10 SINE Alu 1 128 -21 4 1262 1240 41 0 0 chr1 88749900 88750047 -108445385 + B1_Mm SINE Alu 1 147 0 4 1262 288 77 0 0 chr1 88750244 88750283 -108445149 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4 1262 359 266 44 52 chr1 88750378 88750513 -108444919 + RMER15 LTR ERVL 321 454 -121 4 1262 267 132 29 14 chr1 88751618 88751687 -108443745 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1262 478 322 28 24 chr1 88751944 88752157 -108443275 + Cheshire DNA MER1_type 1574 1787 -633 5 1262 369 322 168 32 chr1 88752161 88752568 -108442864 + L1MDb LINE L1 57 518 -5891 5 1262 339 358 35 35 chr1 88752690 88752832 -108442600 + L1MDb LINE L1 402 543 -5866 5 1262 720 315 81 33 chr1 88752834 88753290 -108442142 + L1MDb LINE L1 684 1161 -5248 5 1262 21 57 0 0 chr1 88753308 88753343 -108442089 + AT_rich Low_complexity Low_complexity 1 35 0 5 1262 563 188 110 22 chr1 88754886 88755022 -108440410 + B1_Mur2 SINE Alu 1 148 -1 5 1262 503 125 33 16 chr1 88755048 88755170 -108440262 + (TATG)n Simple_repeat Simple_repeat 1 124 0 5 1262 525 32 0 0 chr1 88755174 88755237 -108440195 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 5 1262 299 322 53 49 chr1 88758361 88758586 -108436846 - L3 LINE CR1 -1980 2509 2284 5 1262 225 0 0 0 chr1 88759121 88759146 -108436286 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1262 701 225 14 0 chr1 88759146 88759284 -108436148 - B1_Mur2 SINE Alu -9 140 1 5 1262 233 0 62 0 chr1 88759738 88759770 -108435662 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1262 493 223 0 0 chr1 88760695 88760789 -108434643 + ID_B1 SINE B4 129 222 -2 5 1262 299 288 12 59 chr1 88761882 88761967 -108433465 + RSINE1 SINE B4 43 123 -42 5 1262 487 235 7 36 chr1 88762125 88762262 -108433170 - L1_Rod LINE L1 -277 5570 5438 5 1262 3183 233 67 58 chr1 88762262 88762671 -108432761 - L1_Rod LINE L1 -524 5323 4911 5 1262 693 66 0 0 chr1 88762671 88762762 -108432670 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 5 1262 3183 233 67 58 chr1 88762762 88763525 -108431907 - L1_Rod LINE L1 -937 4910 4140 5 1262 188 34 0 33 chr1 88763525 88763555 -108431877 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5 1262 630 75 28 0 chr1 88763555 88763661 -108431771 - Lx3_Mus LINE L1 -19 6990 6882 5 1262 3183 233 67 58 chr1 88763661 88763951 -108431481 - L1_Rod LINE L1 -1708 4139 3847 5 1262 5482 8 0 0 chr1 88763971 88764578 -108430854 - L1Md_T LINE L1 0 6582 5976 5 1262 228 254 0 0 chr1 88764593 88764660 -108430772 - L1_Rod LINE L1 -1973 3874 3808 5 1262 378 154 0 0 chr1 88765107 88765185 -108430247 + T-rich Low_complexity Low_complexity 1 78 0 5 1262 217 267 59 110 chr1 88765244 88765362 -108430070 + B3A SINE B2 45 156 -42 5 1262 7732 59 0 0 chr1 88766227 88767270 -108428162 + L1_Mm LINE L1 1983 3025 -2858 5 1262 468 0 0 0 chr1 88767466 88767518 -108427914 + (ATCTG)n Simple_repeat Simple_repeat 1 52 0 5 1262 756 305 96 52 chr1 88767518 88767881 -108427551 - MTEb LTR MaLR 0 379 1 5 1262 1450 306 59 35 chr1 88768353 88768862 -108426570 - MER44B DNA MER2_type -13 537 17 5 1262 280 200 0 20 chr1 88769197 88769248 -108426184 + PB1D7 SINE Alu 62 111 -9 5 1262 258 317 17 0 chr1 88769684 88769744 -108425688 - ID4 SINE ID -19 64 4 5 1262 1455 218 85 8 chr1 88770361 88770713 -108424719 - MTEa LTR MaLR 0 379 1 5 1262 282 87 0 0 chr1 88771242 88771288 -108424144 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1262 965 242 20 0 chr1 88771388 88771586 -108423846 + B3 SINE B2 2 203 -13 5 1262 342 286 85 51 chr1 88772378 88772555 -108422877 - L1MD LINE L1 -1946 4200 4018 5 1262 678 254 78 11 chr1 88772598 88772789 -108422643 - B4A SINE B4 -6 286 83 5 1262 247 333 22 11 chr1 88772825 88772916 -108422516 - B4A SINE B4 -200 92 1 5 1262 343 272 162 7 chr1 88772918 88773066 -108422366 - L1M5 LINE L1 -2136 4010 3840 5 1262 546 286 33 42 chr1 88773126 88773348 -108422084 - L1M5 LINE L1 -2576 3570 3349 5 1262 2120 121 20 70 chr1 88773348 88773747 -108421685 - Lx3B LINE L1 0 6973 6595 5 1262 546 286 33 42 chr1 88773747 88773860 -108421572 - L1M5 LINE L1 -2798 3348 3238 5 1262 568 164 38 53 chr1 88773962 88774117 -108421315 - ORR1D1 LTR MaLR 0 374 211 5 1262 453 259 65 0 chr1 88774320 88774428 -108421004 + PB1D10 SINE Alu 1 115 -2 5 1262 2443 41 0 0 chr1 88774434 88774728 -108420704 + L1Md_A LINE L1 6289 6582 0 5 1262 311 239 176 24 chr1 88776411 88776534 -108418898 + B1F SINE Alu 32 149 0 5 1262 327 310 130 27 chr1 88776703 88776965 -108418467 + L1MC4a LINE L1 5606 5894 -1988 5 1262 358 275 108 69 chr1 88777671 88777960 -108417472 - Charlie7 DNA MER1_type -50 2562 2253 5 1262 563 246 82 0 chr1 88777960 88778094 -108417338 - B1_Mur1 SINE Alu -1 148 4 5 1262 358 275 108 69 chr1 88778094 88778136 -108417296 - Charlie7 DNA MER1_type -360 2252 2218 5 1262 477 0 0 0 chr1 88778136 88778189 -108417243 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 1262 245 98 24 0 chr1 88778233 88778274 -108417158 + (CATA)n Simple_repeat Simple_repeat 1 42 0 5 1262 1657 169 40 4 chr1 88778412 88778685 -108416747 + Lx5 LINE L1 6203 6485 -565 5 1262 454 232 53 0 chr1 88778685 88778780 -108416652 - PB1D9 SINE Alu -12 108 9 5 1262 762 120 51 4 chr1 88779021 88779257 -108416175 + GA-rich Low_complexity Low_complexity 1 247 0 5 1262 445 297 158 16 chr1 88779566 88779877 -108415555 - Charlie7 DNA MER1_type -2170 442 88 5 1262 467 101 13 0 chr1 88780390 88780469 -108414963 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 1262 1342 219 43 46 chr1 88783663 88784012 -108411420 + RLTR14 LTR ERV1 1 348 -34 5 1262 1186 63 14 0 chr1 88784683 88784826 -108410606 - B1_Mus1 SINE Alu -2 146 2 5 1262 1385 266 156 6 chr1 88785070 88785836 -108409596 - L1MB7 LINE L1 -110 6074 5185 5 1262 526 259 22 33 chr1 88785864 88786017 -108409415 - ID_B1 SINE B4 -46 246 95 5 1262 278 288 96 0 chr1 88786071 88786144 -108409288 + ID4_ SINE ID 2 81 -2 5 1262 447 312 87 0 chr1 88786158 88786366 -108409066 - L1MB7 LINE L1 -971 5175 4950 5 1262 195 139 0 0 chr1 88786575 88786611 -108408821 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 5 1262 862 114 16 0 chr1 88786611 88786734 -108408698 - B1_Mus2 SINE Alu -20 127 3 5 1262 568 242 41 16 chr1 88786735 88786857 -108408575 - B4A SINE B4 -62 230 106 5 1262 34 65 0 0 chr1 88786857 88786919 -108408513 + AT_rich Low_complexity Low_complexity 1 62 0 5 1262 293 311 11 53 chr1 88786932 88787027 -108408405 - B4A SINE B4 -201 91 1 5 1262 991 264 103 80 chr1 88787114 88787305 -108408127 - L1MB7 LINE L1 -1236 4910 4704 5 1262 5103 135 50 11 chr1 88787305 88788119 -108407313 - Lx4A LINE L1 0 7058 6213 5 1262 991 264 103 80 chr1 88788119 88788590 -108406842 - L1MB7 LINE L1 -1443 4703 4233 5 1262 250 67 44 0 chr1 88788591 88788636 -108406796 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 1262 7779 119 43 14 chr1 88788645 88789867 -108405565 - Lx3B LINE L1 -4 6969 5713 5 1262 2014 144 15 36 chr1 88789867 88790199 -108405233 + Lx3A LINE L1 6657 6981 0 5 1262 300 127 0 0 chr1 88790199 88790254 -108405178 + (A)n Simple_repeat Simple_repeat 1 55 0 5 1262 352 0 42 0 chr1 88790941 88790989 -108404443 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1262 269 307 118 33 chr1 88791000 88791212 -108404220 + L1MDa LINE L1 166 395 -6238 5 1262 215 93 0 23 chr1 88791708 88791752 -108403680 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1262 558 253 187 58 chr1 88791784 88792334 -108403098 + L1MB5 LINE L1 5232 5939 -235 5 1262 186 143 0 0 chr1 88792443 88792478 -108402954 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1262 207 0 0 0 chr1 88792478 88792501 -108402931 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 1262 566 276 219 17 chr1 88792640 88793042 -108402390 + L1MD LINE L1 4802 5284 -862 5 1262 541 178 1 0 chr1 88793131 88793232 -108402200 + B1_Mur2 SINE Alu 46 149 0 5 1262 25 0 0 0 chr1 88793259 88793284 -108402148 + AT_rich Low_complexity Low_complexity 1 25 0 5 1262 22 35 0 0 chr1 88793308 88793337 -108402095 + AT_rich Low_complexity Low_complexity 1 29 0 5 1262 422 247 0 0 chr1 88793417 88793498 -108401934 - ID4_ SINE ID -2 81 1 5 1262 195 42 0 0 chr1 88793515 88793539 -108401893 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 1262 618 69 29 29 chr1 88793552 88793656 -108401776 + MYSERV16_I-int LTR ERVK 1129 1232 -1094 5 1262 873 214 7 7 chr1 88793656 88793802 -108401630 - B1_Mur1 SINE Alu 0 149 4 5 1262 21 0 0 0 chr1 88793814 88793835 -108401597 + AT_rich Low_complexity Low_complexity 1 21 0 5 1262 1962 141 74 31 chr1 88793862 88794213 -108401219 + ORR1B2 LTR MaLR 2 367 0 5 1262 936 184 0 21 chr1 88794336 88794480 -108400952 + B1_Mur3 SINE Alu 2 142 -7 5 1262 1082 205 89 5 chr1 88794493 88794684 -108400748 - B3 SINE B2 -9 207 1 5 1262 336 298 0 0 chr1 88794840 88794924 -108400508 + RSINE1 SINE B4 3 86 -79 5 1262 1147 111 16 22 chr1 88794849 88795034 -108400398 + B2_Mm2 SINE B2 11 194 -1 5 1262 18531 62 1 0 chr1 88795269 88797588 -108397844 + L1Md_F2 LINE L1 3265 5586 -297 5 1262 8783 39 1 1 chr1 88797588 88798579 -108396853 + L1Md_F2 LINE L1 5587 6577 -5 5 1262 511 221 11 3 chr1 88799211 88799325 -108396107 + B3A SINE B2 1 118 -77 5 1262 833 86 7 26 chr1 88799720 88799858 -108395574 - B1_Mm SINE Alu 0 149 10 5 1262 1077 82 0 56 chr1 88799873 88800016 -108395416 + B1_Mm SINE Alu 1 135 -12 5 1262 1116 133 0 0 chr1 88800017 88800197 -108395235 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1262 3382 35 2 0 chr1 88802745 88803139 -108392293 + L1Md_T LINE L1 5192 5586 -297 5 1262 8793 45 0 0 chr1 88803139 88804135 -108391297 + L1Md_T LINE L1 5587 6582 0 5 1262 5662 93 29 19 chr1 88804136 88804894 -108390538 + L1Md_F2 LINE L1 5800 6565 -17 5 1262 180 97 0 0 chr1 88804894 88804925 -108390507 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 5 1262 1063 230 52 8 chr1 88805027 88805316 -108390116 + L1MD2 LINE L1 5460 5762 -412 5 1262 293 314 150 56 chr1 88806325 88806666 -108388766 + L1MD2 LINE L1 5829 6201 -158 5 1262 7060 50 10 26 chr1 88807563 88808477 -108386955 + L1_Mus2 LINE L1 5668 6566 0 5 1262 909 177 107 15 chr1 88809347 88809553 -108385879 - MARNA DNA Mariner -150 436 212 5 1262 198 0 0 0 chr1 88810085 88810107 -108385325 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1262 222 294 17 5 chr1 88810283 88810363 -108385069 - MIRc SINE MIR -171 97 15 5 1262 284 280 23 47 chr1 88810770 88810856 -108384576 - MLT1K LTR MaLR -4 591 508 5 1262 810 242 14 72 chr1 88811356 88811565 -108383867 + B3A SINE B2 1 197 -1 5 1262 1104 76 45 0 chr1 88812250 88812407 -108383025 + B2_Mm2 SINE B2 1 164 -31 5 1262 498 70 0 0 chr1 88812481 88812552 -108382880 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1262 604 286 30 8 chr1 88812579 88812713 -108382719 + RSINE1 SINE B4 9 145 -20 5 1262 192 152 0 0 chr1 88815654 88815687 -108379745 + (TATG)n Simple_repeat Simple_repeat 3 35 0 5 1262 761 207 0 52 chr1 88815693 88815846 -108379586 - B1_Mur1 SINE Alu -3 146 2 5 1262 1060 133 0 7 chr1 88816565 88816716 -108378716 + B1_Mur4 SINE Alu 1 150 0 5 1262 1110 65 0 0 chr1 88816959 88817097 -108378335 + B1_Mus1 SINE Alu 11 148 0 6 1262 940 49 0 34 chr1 88817117 88817265 -108378167 + (GAA)n Simple_repeat Simple_repeat 2 144 0 6 1262 1001 144 0 6 chr1 88817290 88817465 -108377967 + (GAA)n Simple_repeat Simple_repeat 1 174 0 6 1262 243 212 25 12 chr1 88817477 88817558 -108377874 + GA-rich Low_complexity Low_complexity 2 83 0 6 1262 193 313 200 30 chr1 88817733 88817868 -108377564 + L2a LINE L2 3268 3425 -1 6 1262 189 304 153 31 chr1 88818052 88818215 -108377217 + L3 LINE CR1 4171 4353 -136 6 1262 282 29 0 0 chr1 88818473 88818508 -108376924 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1262 450 0 0 0 chr1 88818508 88818557 -108376875 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1262 316 282 11 34 chr1 88818708 88818796 -108376636 + PB1D10 SINE Alu 27 112 -5 6 1262 3673 25 2 0 chr1 88819186 88819581 -108375851 - MTA_Mm LTR MaLR 0 396 1 6 1262 247 337 163 0 chr1 88819704 88819796 -108375636 - PB1D10 SINE Alu -35 114 8 6 1262 231 282 141 0 chr1 88820319 88820390 -108375042 - B1F SINE Alu -26 123 43 6 1262 21 0 0 0 chr1 88823269 88823290 -108372142 + AT_rich Low_complexity Low_complexity 1 21 0 6 1262 246 271 143 0 chr1 88823780 88823850 -108371582 - ID4 SINE ID -3 80 1 6 1262 426 218 191 140 chr1 88823870 88824035 -108371397 - MER58B DNA MER1_type -61 280 85 6 1262 1324 189 5 0 chr1 88824035 88824247 -108371185 + B3 SINE B2 1 213 -3 6 1262 426 218 191 140 chr1 88824247 88824316 -108371116 - MER58B DNA MER1_type -257 84 34 6 1262 207 373 91 52 chr1 88824435 88824667 -108370765 - L4 LINE RTE -896 1133 893 6 1262 1445 256 46 20 chr1 88825008 88825050 -108370382 + Lx8 LINE L1 5382 5425 -422 6 1262 210 118 0 0 chr1 88825050 88825084 -108370348 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 1262 1445 276 43 34 chr1 88825084 88825691 -108369741 + Lx8 LINE L1 5426 6065 -1408 6 1262 620 250 108 49 chr1 88825691 88825876 -108369556 + B3A SINE B2 3 198 0 6 1262 1197 316 37 64 chr1 88825876 88826042 -108369390 + Lx8 LINE L1 6066 6217 -1256 6 1262 266 217 33 0 chr1 88826098 88826158 -108369274 + Lx8 LINE L1 6419 6480 -993 6 1262 1162 165 139 8 chr1 88826153 88826397 -108369035 - Lx9 LINE L1 -682 6962 6687 6 1262 875 192 26 0 chr1 88826489 88826640 -108368792 - Lx9 LINE L1 -952 6692 6538 6 1262 347 370 57 42 chr1 88826648 88826860 -108368572 - B4 SINE B4 -11 281 67 6 1262 1491 66 39 0 chr1 88827666 88827848 -108367584 + B2_Mm2 SINE B2 2 190 -5 6 1262 248 239 22 0 chr1 88828341 88828387 -108367045 - ID4_ SINE ID -33 50 4 6 1262 227 373 67 56 chr1 88830424 88830694 -108364738 - L3 LINE CR1 -104 4385 4113 6 1262 209 156 22 22 chr1 88831162 88831208 -108364224 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 6 1262 697 182 0 16 chr1 88831316 88831439 -108363993 - L1_Mur2 LINE L1 -440 5437 5317 6 1262 6569 54 0 2 chr1 88831436 88832259 -108363173 - L1Md_F2 LINE L1 -1501 4382 3562 6 1262 9858 58 0 1 chr1 88832253 88833471 -108361961 + L1Md_F2 LINE L1 4370 5586 -297 6 1262 8607 32 2 1 chr1 88833471 88834466 -108360966 + L1Md_F2 LINE L1 5587 6582 0 6 1262 4898 127 8 10 chr1 88834468 88835245 -108360187 - L1_Mur2 LINE L1 -547 5330 4556 6 1262 341 208 172 16 chr1 88835241 88835363 -108360069 + Lx5 LINE L1 6910 7050 0 6 1262 243 203 0 0 chr1 88835630 88835689 -108359743 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1262 228 278 0 53 chr1 88835913 88836008 -108359424 + T-rich Low_complexity Low_complexity 4 93 0 6 1262 636 163 24 16 chr1 88837014 88837139 -108358293 - B3 SINE B2 0 216 91 6 1262 8366 41 1 2 chr1 88837164 88838465 -108356967 - L1Md_F2 LINE L1 0 6582 5285 6 1262 6865 71 9 0 chr1 88838459 88839366 -108356066 + L1_Mm LINE L1 2464 3378 -2505 6 1262 219 36 0 0 chr1 88839402 88839430 -108356002 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1262 306 245 27 54 chr1 88839751 88839863 -108355569 + B3 SINE B2 1 109 -89 6 1262 272 315 66 21 chr1 88840140 88840494 -108354938 + L1MEe LINE L1 2360 2716 -3430 6 1262 27 0 0 0 chr1 88840515 88840542 -108354890 + AT_rich Low_complexity Low_complexity 1 27 0 6 1262 1094 277 80 23 chr1 88840830 88841269 -108354163 - L1_Mur3 LINE L1 -1757 4123 3660 6 1262 581 211 82 0 chr1 88843695 88843842 -108351590 + MER2 DNA MER2_type 92 250 -95 6 1262 216 240 197 13 chr1 88845603 88845679 -108349753 + PB1D10 SINE Alu 15 104 -13 6 1262 216 0 0 0 chr1 88845679 88845703 -108349729 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 6 1262 458 263 56 63 chr1 88845727 88845869 -108349563 + RSINE1 SINE B4 25 165 0 6 1262 289 346 37 8 chr1 88845969 88846103 -108349329 + MIRb SINE MIR 116 253 -15 6 1262 516 241 0 0 chr1 88846227 88846385 -108349047 + (TG)n Simple_repeat Simple_repeat 1 158 0 6 1262 648 227 0 0 chr1 88846451 88846627 -108348805 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1262 566 239 6 0 chr1 88846645 88846821 -108348611 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1262 528 302 20 15 chr1 88846891 88847086 -108348346 + L1M5 LINE L1 4906 5101 -1045 6 1262 1147 49 7 0 chr1 88847128 88847270 -108348162 + B1_Mm SINE Alu 5 147 0 6 1262 259 221 13 93 chr1 88847291 88847305 -108348127 + MT2B LTR ERVL 152 220 -381 6 1262 269 246 16 0 chr1 88847305 88847366 -108348066 + PB1D9 SINE Alu 2 63 -57 6 1262 303 151 0 0 chr1 88847421 88847474 -108347958 - ORR1D1 LTR MaLR -16 358 306 6 1262 261 83 0 0 chr1 88847492 88847528 -108347904 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1262 22 70 0 0 chr1 88847979 88848022 -108347410 + AT_rich Low_complexity Low_complexity 1 43 0 6 1262 409 275 62 48 chr1 88848022 88848167 -108347265 + ID_B1 SINE B4 74 220 -4 6 1262 201 175 25 0 chr1 88848196 88848236 -108347196 + GA-rich Low_complexity Low_complexity 3 43 0 6 1262 234 331 45 39 chr1 88850912 88851066 -108344366 + L2a LINE L2 3272 3426 0 6 1262 315 0 0 0 chr1 88851704 88851739 -108343693 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1262 222 192 75 19 chr1 88853261 88853314 -108342118 + B3 SINE B2 1 56 -160 6 1262 21 36 0 0 chr1 88853996 88854024 -108341408 + AT_rich Low_complexity Low_complexity 1 28 0 6 1262 451 310 51 13 chr1 88854852 88855009 -108340423 + RSINE1 SINE B4 3 165 0 6 1262 312 305 80 44 chr1 88855181 88855318 -108340114 - MLT1K LTR MaLR -64 531 390 6 1262 227 237 17 0 chr1 88855649 88855708 -108339724 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1262 653 45 23 0 chr1 88855850 88855938 -108339494 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 6 1262 189 0 0 0 chr1 88855960 88855981 -108339451 + (CAAGG)n Simple_repeat Simple_repeat 2 22 0 6 1262 748 325 31 8 chr1 88857012 88857266 -108338166 + B4A SINE B4 5 264 -28 6 1262 666 68 0 0 chr1 88857266 88857354 -108338078 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1262 186 364 15 0 chr1 88857432 88857498 -108337934 - L2b LINE L2 -3 3372 3306 6 1262 263 228 62 77 chr1 88858368 88858481 -108336951 + RSINE1 SINE B4 84 281 -11 6 1262 624 306 25 40 chr1 88861320 88861503 -108333929 + B3A SINE B2 1 181 -17 6 1262 321 68 0 0 chr1 88861503 88861547 -108333885 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1262 624 306 25 40 chr1 88861547 88861564 -108333868 + B3A SINE B2 182 198 0 6 1262 407 264 56 75 chr1 88862367 88862580 -108332852 + B3 SINE B2 8 216 0 6 1262 324 289 9 37 chr1 88862613 88862721 -108332711 + U6 snRNA snRNA 2 106 -1 6 1262 376 202 37 37 chr1 88862895 88862977 -108332455 - B1F SINE Alu -1 148 67 6 1262 464 276 9 0 chr1 88862949 88863054 -108332378 - ID_B1 SINE B4 -23 201 96 6 1262 432 105 0 0 chr1 88865559 88865635 -108329797 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1262 192 339 69 0 chr1 88865927 88866057 -108329375 - L2c LINE L2 -217 3170 3032 6 1262 316 244 44 11 chr1 88866516 88866607 -108328825 - L1MD3 LINE L1 -154 7841 7748 6 1263 421 360 110 52 chr1 88866830 88867176 -108328256 - MLT1A LTR MaLR -8 366 1 6 1263 21 0 0 0 chr1 88867190 88867211 -108328221 + AT_rich Low_complexity Low_complexity 1 21 0 6 1263 197 86 33 33 chr1 88867284 88867344 -108328088 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1263 1190 68 0 0 chr1 88867345 88867492 -108327940 - B1_Mus2 SINE Alu 0 147 1 6 1263 803 187 60 11 chr1 88867587 88867771 -108327661 + ID_B1 SINE B4 32 224 0 6 1263 215 188 0 59 chr1 88867819 88867856 -108327576 + A-rich Low_complexity Low_complexity 1 36 0 6 1263 2195 49 0 0 chr1 88867856 88868150 -108327282 + L1_Mus1 LINE L1 6304 6567 0 6 1263 615 187 30 77 chr1 88868754 88868899 -108326533 - B1F2 SINE Alu -2 147 2 6 1263 530 247 96 0 chr1 88868972 88869118 -108326314 + RSINE1 SINE B4 2 161 -4 6 1263 663 182 96 45 chr1 88869384 88869562 -108325870 - B3 SINE B2 -8 187 1 6 1263 266 261 81 40 chr1 88869615 88869739 -108325693 - MER2 DNA MER2_type -192 153 25 6 1263 337 323 65 0 chr1 88870802 88870926 -108324506 + HAL1 LINE L1 4 135 -2372 6 1263 323 286 153 16 chr1 88870934 88871176 -108324256 + HAL1 LINE L1 91 365 -2142 6 1263 265 298 12 12 chr1 88871239 88871324 -108324108 + HAL1 LINE L1 606 690 -1817 6 1263 243 0 0 0 chr1 88871371 88871398 -108324034 + (CAGTC)n Simple_repeat Simple_repeat 3 29 0 6 1263 735 12 0 0 chr1 88871446 88871530 -108323902 + (CTG)n Simple_repeat Simple_repeat 2 85 0 6 1263 1210 80 6 6 chr1 88871532 88871709 -108323723 + (TTCTCC)n Simple_repeat Simple_repeat 4 180 0 6 1263 234 125 0 0 chr1 88871725 88871773 -108323659 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1263 558 185 22 0 chr1 88871790 88871919 -108323513 - B1_Mur1 SINE Alu -7 142 1 6 1263 615 78 0 0 chr1 88872222 88872312 -108323120 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1263 423 0 0 0 chr1 88872312 88872358 -108323074 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1263 1140 82 7 0 chr1 88872453 88872600 -108322832 - B1_Mus1 SINE Alu 0 148 1 6 1263 219 290 29 0 chr1 88873017 88873086 -108322346 + PB1D10 SINE Alu 42 112 -5 6 1263 824 140 11 37 chr1 88873113 88873371 -108322061 + GA-rich Low_complexity Low_complexity 1 251 0 6 1263 476 277 25 16 chr1 88873377 88873498 -108321934 + B4 SINE B4 2 123 -169 6 1263 285 29 0 0 chr1 88873511 88873545 -108321887 + (CAGGG)n Simple_repeat Simple_repeat 5 38 0 6 1263 215 244 0 0 chr1 88873636 88873681 -108321751 + (CATA)n Simple_repeat Simple_repeat 4 48 0 7 1263 804 275 18 50 chr1 88873682 88873961 -108321471 + MLT1A LTR MaLR 105 374 0 7 1263 1002 262 218 23 chr1 88873961 88874559 -108320873 - Charlie1 DNA MER1_type -529 2252 1537 7 1263 261 319 16 57 chr1 88874612 88874735 -108320697 - Charlie1 DNA MER1_type -2656 125 8 7 1263 273 278 0 93 chr1 88874848 88874867 -108320565 + ID_B1 SINE B4 127 223 -1 7 1263 372 210 0 80 chr1 88874867 88874955 -108320477 + B1F1 SINE Alu 67 147 -2 7 1263 250 307 61 0 chr1 88875108 88875222 -108320210 - L1MC5 LINE L1 -184 7777 7657 7 1263 343 236 132 16 chr1 88875481 88875610 -108319822 + L1ME4a LINE L1 5967 6110 -14 7 1263 26 50 0 0 chr1 88875610 88875650 -108319782 + AT_rich Low_complexity Low_complexity 1 40 0 7 1263 8292 24 24 4 chr1 88876910 88877878 -108317554 - L1Md_F3 LINE L1 0 6584 5598 7 1263 3745 75 2 10 chr1 88878695 88879191 -108316241 - L1Md_F2 LINE L1 0 6582 6091 7 1263 494 42 0 14 chr1 88880214 88880286 -108315146 + L1Md_F2 LINE L1 6512 6582 0 7 1263 1098 165 130 0 chr1 88880418 88880618 -108314814 - URR1A DNA MER1_type 0 226 1 7 1263 333 0 0 0 chr1 88881734 88881771 -108313661 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1263 23 0 0 0 chr1 88881800 88881823 -108313609 + AT_rich Low_complexity Low_complexity 1 23 0 7 1263 8279 17 0 0 chr1 88883260 88884307 -108311125 - L1Md_T LINE L1 -583 5999 4953 7 1263 5164 38 0 0 chr1 88884307 88884910 -108310522 + L1Md_T LINE L1 5980 6582 0 7 1263 198 0 0 0 chr1 88884950 88884972 -108310460 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1263 815 65 182 16 chr1 88884972 88885098 -108310334 - B1_Mus1 SINE Alu 0 148 2 7 1263 1245 90 0 0 chr1 88885478 88885655 -108309777 + (GAA)n Simple_repeat Simple_repeat 3 179 0 7 1263 362 74 0 18 chr1 88885655 88885676 -108309756 + (GGA)n Simple_repeat Simple_repeat 1 21 0 7 1263 1048 124 6 6 chr1 88885676 88885855 -108309577 + (GAA)n Simple_repeat Simple_repeat 1 179 0 7 1263 362 74 0 18 chr1 88885855 88885888 -108309544 + (GGA)n Simple_repeat Simple_repeat 1 33 0 7 1263 1345 101 11 0 chr1 88885901 88886080 -108309352 + B2_Mm2 SINE B2 1 181 -14 7 1263 23 0 0 0 chr1 88886080 88886103 -108309329 + AT_rich Low_complexity Low_complexity 1 23 0 7 1263 712 0 23 0 chr1 88886555 88886643 -108308789 + (GA)n Simple_repeat Simple_repeat 1 90 0 7 1263 1931 170 63 58 chr1 88887370 88887832 -108307600 + L1_Rod LINE L1 3170 3633 -2214 7 1263 312 320 10 20 chr1 88888432 88888531 -108306901 + PB1D10 SINE Alu 20 117 0 7 1263 455 107 0 13 chr1 88888531 88888607 -108306825 + (GGA)n Simple_repeat Simple_repeat 1 75 0 7 1263 567 202 0 0 chr1 88888652 88888746 -108306686 - PB1D7 SINE Alu -21 99 6 7 1263 231 331 58 70 chr1 88888653 88888809 -108306623 - MT2B LTR ERVL -350 251 98 7 1263 263 322 31 50 chr1 88888782 88888942 -108306490 + Tigger13a DNA MER2_type 611 767 -4 7 1263 181 203 39 104 chr1 88890068 88890145 -108305287 + L2a LINE L2 3271 3342 -84 7 1263 568 210 8 0 chr1 88890911 88891035 -108304397 - MER58B DNA MER1_type -165 176 52 7 1263 229 136 0 43 chr1 88891391 88891437 -108303995 + C-rich Low_complexity Low_complexity 5 48 0 7 1263 3163 17 0 0 chr1 88891960 88892306 -108303126 - ORR1A0 LTR MaLR 0 346 1 7 1263 606 28 0 0 chr1 88892439 88892511 -108302921 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1263 235 303 86 43 chr1 88893795 88893981 -108301451 + L2c LINE L2 3182 3375 -12 7 1263 1091 104 0 0 chr1 88895212 88895356 -108300076 + B1_Mus1 SINE Alu 5 148 0 7 1263 814 266 32 14 chr1 88895363 88895580 -108299852 + ID_B1 SINE B4 4 224 0 7 1263 653 291 13 0 chr1 88895697 88895848 -108299584 - RSINE1 SINE B4 -9 156 4 7 1263 1261 224 23 8 chr1 88896894 88897150 -108298282 - B4 SINE B4 -27 265 6 7 1263 285 302 23 68 chr1 88897157 88897377 -108298055 - L1MC LINE L1 -815 5331 5122 7 1263 913 187 16 37 chr1 88897395 88897419 -108298013 - B2_Mm2 SINE B2 -9 186 164 7 1263 185 0 0 39 chr1 88897419 88897445 -108297987 + (TTA)n Simple_repeat Simple_repeat 2 26 0 7 1263 913 187 16 37 chr1 88897445 88897609 -108297823 - B2_Mm2 SINE B2 -32 163 2 7 1263 602 174 18 9 chr1 88897616 88897726 -108297706 - PB1D10 SINE Alu -5 112 2 7 1263 196 390 7 14 chr1 88898777 88898915 -108296517 - L2 LINE L2 -568 2851 2715 7 1263 331 209 211 47 chr1 88900353 88900524 -108294908 - MIRb SINE MIR -1 267 69 7 1263 317 339 79 87 chr1 88900618 88900974 -108294458 + L1MD1 LINE L1 5887 6239 -3 7 1263 419 330 37 0 chr1 88901297 88901406 -108294026 + RSINE1 SINE B4 45 157 -8 7 1263 29 60 0 0 chr1 88901412 88901462 -108293970 + AT_rich Low_complexity Low_complexity 1 50 0 7 1263 647 200 0 0 chr1 88901517 88901622 -108293810 - B3A SINE B2 -92 106 2 7 1263 1368 211 104 29 chr1 88901878 88902224 -108293208 - ORR1D1 LTR MaLR 0 374 3 7 1263 351 0 0 0 chr1 88903224 88903263 -108292169 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1263 203 254 0 17 chr1 88903571 88903631 -108291801 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 7 1263 501 200 67 39 chr1 88903635 88903739 -108291693 - PB1D10 SINE Alu -2 115 9 7 1263 212 0 36 0 chr1 88903996 88904024 -108291408 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1263 655 203 86 0 chr1 88904024 88904152 -108291280 + B1_Mur1 SINE Alu 10 148 -1 7 1263 376 264 82 37 chr1 88904340 88904474 -108290958 - MIR SINE MIR -70 192 53 7 1263 656 275 28 7 chr1 88904804 88904947 -108290485 - RSINE1 SINE B4 0 165 20 7 1263 734 272 40 35 chr1 88906615 88906813 -108288619 + ID_B1 SINE B4 13 211 -13 7 1263 222 152 130 0 chr1 88906776 88906822 -108288610 + PB1D10 SINE Alu 65 116 -1 7 1263 249 108 0 0 chr1 88908785 88908822 -108286610 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1263 470 240 10 10 chr1 88908855 88908952 -108286480 - RSINE1 SINE B4 -60 105 9 7 1263 1135 76 140 0 chr1 88909005 88909176 -108286256 - B2_Mm2 SINE B2 0 195 1 7 1263 432 0 0 0 chr1 88909928 88909976 -108285456 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1263 403 75 0 43 chr1 88909976 88910046 -108285386 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 7 1263 651 214 0 8 chr1 88910049 88910167 -108285265 - PB1D9 SINE Alu -1 119 3 7 1263 211 345 86 20 chr1 88911665 88911816 -108283616 + L2 LINE L2 1428 1588 -1831 7 1263 267 213 0 0 chr1 88912696 88912771 -108282661 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1263 1088 234 47 43 chr1 88912788 88913065 -108282367 - B4 SINE B4 -14 278 1 7 1263 301 386 10 10 chr1 88913114 88913216 -108282216 - PB1D10 SINE Alu -15 102 1 7 1263 23 33 0 0 chr1 88913330 88913360 -108282072 + AT_rich Low_complexity Low_complexity 1 30 0 7 1263 366 324 7 21 chr1 88913772 88913914 -108281518 - L1MEg LINE L1 -4132 1952 1813 7 1263 212 225 0 0 chr1 88913987 88914027 -108281405 + C-rich Low_complexity Low_complexity 1 40 0 7 1263 504 0 0 0 chr1 88914280 88914336 -108281096 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1263 459 0 0 0 chr1 88914336 88914386 -108281046 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1263 219 36 0 0 chr1 88914402 88914430 -108281002 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1263 1179 43 0 7 chr1 88914433 88914572 -108280860 - B1_Mm SINE Alu -6 141 4 7 1263 195 69 0 0 chr1 88914986 88915015 -108280417 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1263 429 306 19 16 chr1 88915016 88915157 -108280275 - PB1D10 SINE Alu 0 149 1 7 1263 362 229 8 33 chr1 88915417 88915446 -108279986 - L1_Mur3 LINE L1 -66 5814 5789 7 1263 380 320 123 4 chr1 88915446 88915706 -108279726 - B4A SINE B4 0 292 2 7 1263 532 274 75 19 chr1 88915706 88915918 -108279514 - L1MA4 LINE L1 -475 5825 5602 7 1263 720 111 0 0 chr1 88915918 88916026 -108279406 + (TC)n Simple_repeat Simple_repeat 2 109 0 7 1263 265 167 0 0 chr1 88916028 88916076 -108279356 - L1MA4 LINE L1 -705 5598 5551 7 1263 300 328 163 57 chr1 88916626 88917153 -108278279 + L2 LINE L2 2500 3082 -337 7 1263 195 172 121 30 chr1 88917384 88917450 -108277982 + L3 LINE CR1 2003 2074 -2415 7 1263 474 305 99 73 chr1 88917885 88918076 -108277356 + B4A SINE B4 2 197 -95 7 1263 215 333 64 11 chr1 88918066 88918160 -108277272 + RSINE1 SINE B4 67 165 0 7 1263 419 113 14 0 chr1 88918597 88918668 -108276764 + (TGG)n Simple_repeat Simple_repeat 1 72 0 7 1263 275 242 79 20 chr1 88919805 88919906 -108275526 - LTR16B1 LTR ERVL -164 316 210 7 1263 1264 141 20 5 chr1 88921482 88921682 -108273750 - ORR1C2 LTR MaLR -6 378 176 7 1263 288 143 0 0 chr1 88921690 88921746 -108273686 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1263 784 213 36 18 chr1 88921762 88921929 -108273503 - ORR1C2 LTR MaLR -203 171 2 7 1263 317 239 83 69 chr1 88921929 88922059 -108273373 - YREP_Mm Unknown Unknown -1470 342 211 7 1263 570 177 28 121 chr1 88921969 88922084 -108273348 + ID_B1 SINE B4 97 211 -13 7 1263 1653 16 16 0 chr1 88922084 88922273 -108273159 - B2_Mm1a SINE B2 0 193 2 7 1263 570 177 28 121 chr1 88922273 88922298 -108273134 + ID_B1 SINE B4 212 224 0 7 1263 361 275 0 0 chr1 88922529 88922609 -108272823 + ID4 SINE ID 4 83 0 7 1263 2078 270 166 41 chr1 88922780 88923717 -108271715 - Lx8 LINE L1 -61 7412 6358 7 1263 472 278 93 0 chr1 88923746 88923854 -108271578 + ID_B1 SINE B4 105 222 -2 7 1263 306 313 132 37 chr1 88923856 88923992 -108271440 - L1M5 LINE L1 -411 5773 5625 7 1263 338 280 92 18 chr1 88924026 88924135 -108271297 - L1M5 LINE L1 -806 5340 5224 7 1263 429 70 0 0 chr1 88924392 88924449 -108270983 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 7 1263 268 315 68 0 chr1 88926422 88926495 -108268937 - ID4 SINE ID -2 81 4 7 1263 330 299 51 0 chr1 88926508 88926625 -108268807 - PB1 SINE Alu -4 123 1 8 1263 230 217 14 0 chr1 88927076 88927145 -108268287 + (CATCC)n Simple_repeat Simple_repeat 3 72 0 8 1263 453 326 38 98 chr1 88928664 88928929 -108266503 - ORR1E LTR MaLR -107 252 4 8 1263 444 296 30 53 chr1 88930216 88930348 -108265084 + B1F SINE Alu 7 135 -14 8 1263 235 268 0 0 chr1 88930392 88930448 -108264984 - L2a LINE L2 -10 3416 3361 8 1263 234 0 0 0 chr1 88931470 88931496 -108263936 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1263 207 0 0 0 chr1 88932352 88932375 -108263057 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1263 400 196 10 10 chr1 88936219 88936240 -108259192 + polypurine Low_complexity Low_complexity 4 24 0 8 1263 1023 98 23 11 chr1 88936240 88936415 -108259017 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 8 1263 400 196 10 10 chr1 88936415 88936496 -108258936 + GA-rich Low_complexity Low_complexity 25 105 0 8 1263 862 92 14 47 chr1 88945669 88945817 -108249615 - URR1B DNA MER1_type 0 225 83 8 1263 369 250 46 109 chr1 88945670 88945845 -108249587 + CYRA11_Mm Unknown Y-chromosome 172 335 -282 8 1263 189 107 0 0 chr1 88945964 88945992 -108249440 + (CAGCC)n Simple_repeat Simple_repeat 3 30 0 8 1263 213 94 0 0 chr1 88946427 88946459 -108248973 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 8 1263 249 279 90 0 chr1 88949566 88949677 -108245755 + HAL1 LINE L1 622 742 -1765 8 1263 527 274 48 6 chr1 88950179 88950324 -108245108 + B1F SINE Alu 3 141 -8 8 1263 1325 63 34 6 chr1 88951255 88951430 -108244002 + B2_Mm2 SINE B2 2 181 -14 8 1263 366 77 18 5 chr1 88951473 88951537 -108243895 + B2_Mm2 SINE B2 47 109 -107 8 1263 538 307 98 40 chr1 88951679 88951954 -108243478 + B4A SINE B4 2 292 0 8 1263 303 175 0 0 chr1 88951954 88952011 -108243421 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1263 237 339 0 0 chr1 88952692 88952757 -108242675 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 8 1263 716 177 170 39 chr1 88952870 88953052 -108242380 + B3 SINE B2 5 210 -6 8 1263 472 241 58 36 chr1 88953070 88953208 -108242224 + B1F1 SINE Alu 1 141 -8 8 1263 538 210 40 92 chr1 88953791 88953964 -108241468 + RSINE1 SINE B4 2 165 0 8 1263 230 281 24 35 chr1 88954989 88955074 -108240358 - MIRb SINE MIR -71 197 114 8 1263 415 196 0 64 chr1 88955153 88955262 -108240170 - B3 SINE B2 -2 214 113 8 1263 371 299 46 63 chr1 88955272 88955447 -108239985 - MER113 DNA MER1_type -1 520 349 8 1263 281 243 14 41 chr1 88955447 88955520 -108239912 + ID4_ SINE ID 4 74 -9 8 1263 654 173 109 36 chr1 88955565 88955703 -108239729 + B1_Mur3 SINE Alu 2 149 0 8 1263 312 268 42 0 chr1 88955725 88955796 -108239636 + ID_B1 SINE B4 143 216 -8 8 1263 238 326 50 10 chr1 88956002 88956101 -108239331 - MER113 DNA MER1_type -296 225 123 8 1263 756 333 45 7 chr1 88956453 88956740 -108238692 - Lx8 LINE L1 -283 7190 6893 8 1263 665 277 54 45 chr1 88956771 88956994 -108238438 - Lx8 LINE L1 -1046 6427 6203 8 1263 369 0 0 0 chr1 88956998 88957039 -108238393 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1263 721 229 60 32 chr1 88957144 88957270 -108238162 + B3 SINE B2 27 153 -63 8 1263 297 0 0 0 chr1 88957270 88957303 -108238129 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1263 721 229 60 32 chr1 88957303 88957361 -108238071 + B3 SINE B2 154 216 0 8 1263 250 132 38 0 chr1 88957461 88957514 -108237918 + GA-rich Low_complexity Low_complexity 3 57 0 8 1263 957 141 83 22 chr1 88957589 88957770 -108237662 + B2_Mm2 SINE B2 2 193 -2 8 1263 242 129 54 0 chr1 88957901 88957950 -108237482 + B1_Mus2 SINE Alu 89 141 -8 8 1263 249 33 0 0 chr1 88957951 88957981 -108237451 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 8 1263 203 0 37 0 chr1 88958613 88958640 -108236792 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 8 1263 1479 159 199 55 chr1 88958831 88959157 -108236275 - ORR1D1 LTR MaLR 0 374 2 8 1263 548 297 137 31 chr1 88959515 88959866 -108235566 - MT2A LTR ERVL -84 449 62 8 1263 392 200 100 0 chr1 88959867 88959957 -108235475 - MTE2b LTR MaLR -280 99 1 8 1263 903 171 61 83 chr1 88959984 88960214 -108235218 + MT2A LTR ERVL 1 225 -308 8 1263 753 158 30 0 chr1 88960249 88960382 -108235050 - B1_Mus1 SINE Alu -1 147 11 8 1263 459 0 0 0 chr1 88960388 88960439 -108234993 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1263 269 128 21 0 chr1 88960466 88960513 -108234919 + MT2A LTR ERVL 535 582 -2 8 1263 583 221 9 60 chr1 88961312 88961463 -108233969 + ID_B1 SINE B4 86 224 0 8 1263 741 160 6 0 chr1 88961867 88962033 -108233399 + CT-rich Low_complexity Low_complexity 1 166 0 8 1263 328 137 390 0 chr1 88962399 88962494 -108232938 - B2_Mm2 SINE B2 -15 180 49 8 1263 1326 85 11 0 chr1 88962528 88962705 -108232727 - B2_Mm1t SINE B2 -14 179 1 8 1263 258 232 95 24 chr1 88962768 88962852 -108232580 + PB1D10 SINE Alu 27 116 -1 8 1263 21 0 0 0 chr1 88962867 88962888 -108232544 + AT_rich Low_complexity Low_complexity 1 21 0 8 1263 510 203 29 72 chr1 88963021 88963159 -108232273 - B1F1 SINE Alu 0 149 18 8 1263 345 301 25 101 chr1 88963159 88963180 -108232252 - ID_B1 SINE B4 0 224 78 8 1263 371 241 0 0 chr1 88963179 88963258 -108232174 - ID_B1 SINE B4 -1 223 145 8 1263 311 255 100 60 chr1 88963292 88963392 -108232040 - PB1D10 SINE Alu -13 104 1 8 1263 285 356 0 17 chr1 88963393 88963510 -108231922 - L1M3 LINE L1 -345 5823 5709 8 1263 623 202 0 16 chr1 88963674 88963795 -108231637 - B1_Mus2 SINE Alu -18 129 11 8 1263 826 154 31 0 chr1 88965431 88965561 -108229871 + B1_Mur1 SINE Alu 1 134 -15 8 1263 225 0 0 0 chr1 88965563 88965588 -108229844 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 1263 221 246 0 17 chr1 88966921 88966979 -108228453 + MIRm SINE MIR 98 154 -122 8 1263 1636 120 90 21 chr1 88967636 88967870 -108227562 + ORR1A2 LTR MaLR 3 261 -66 8 1263 1297 98 54 0 chr1 88967870 88968054 -108227378 - B2_Mm2 SINE B2 0 195 2 8 1263 1636 120 90 21 chr1 88968054 88968108 -108227324 + ORR1A2 LTR MaLR 262 311 -16 8 1263 367 236 33 3 chr1 88968468 88968584 -108226848 - PB1D10 SINE Alu -28 121 1 8 1263 3192 53 10 17 chr1 88968991 88969394 -108226038 + MTB LTR MaLR 1 400 0 8 1263 339 98 0 0 chr1 88969892 88969943 -108225489 - B1_Mur4 SINE Alu 0 150 100 8 1263 189 0 0 0 chr1 88969975 88969996 -108225436 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 8 1263 3811 144 124 65 chr1 88969996 88970010 -108225422 - RMER19B LTR ERVK -24 878 865 8 1263 1153 75 0 14 chr1 88970010 88970158 -108225274 - B1_Mus1 SINE Alu -2 146 1 8 1263 3811 144 124 65 chr1 88970158 88970972 -108224460 - RMER19B LTR ERVK -38 864 2 8 1263 1442 79 16 16 chr1 88970972 88971164 -108224268 + B2_Mm2 SINE B2 1 192 -3 8 1263 845 176 0 33 chr1 88971186 88971339 -108224093 + B1_Mus1 SINE Alu 1 148 0 8 1263 3302 105 33 63 chr1 88971968 88972570 -108222862 - RLTR6_Mm LTR ERV1 -70 584 1 8 1263 22774 37 29 21 chr1 88972570 88975528 -108219904 - MMVL30-int LTR ERV1 0 3698 716 8 1263 435 181 108 49 chr1 88975794 88975960 -108219472 - MMVL30-int LTR ERV1 -7023 533 280 8 1263 6262 26 60 18 chr1 88975954 88976749 -108218683 - RLTR6-int LTR ERV1 -6949 829 1 8 1263 3361 107 32 62 chr1 88976750 88977365 -108218067 - RLTR6_Mm LTR ERV1 -50 604 8 8 1263 255 342 0 0 chr1 88977475 88977548 -108217884 - ID_B1 SINE B4 -72 152 80 8 1263 7826 142 50 4 chr1 88977665 88979140 -108216292 - ORR1A3-int LTR MaLR -421 1542 1 8 1263 289 225 62 12 chr1 88979441 88979522 -108215910 + L1MD LINE L1 5507 5591 -651 8 1263 945 272 9 0 chr1 88979527 88979740 -108215692 + ID_B1 SINE B4 2 216 -8 8 1263 232 373 48 21 chr1 88979780 88979800 -108215632 + B1_Mur4 SINE Alu 2 145 0 8 1263 450 283 8 0 chr1 88979800 88979920 -108215512 + ID_B1 SINE B4 102 222 -2 8 1263 684 204 15 0 chr1 88979922 88980059 -108215373 + ID_B1 SINE B4 81 219 -5 8 1263 331 345 8 0 chr1 88980100 88980219 -108215213 + PB1D9 SINE Alu 1 120 0 8 1263 292 309 25 98 chr1 88980255 88980377 -108215055 + PB1 SINE Alu 13 125 -2 8 1263 508 160 109 10 chr1 88980548 88980649 -108214783 + B1_Mur2 SINE Alu 37 147 -2 8 1263 459 0 0 0 chr1 88980725 88980776 -108214656 + (CTA)n Simple_repeat Simple_repeat 1 51 0 8 1263 370 239 112 26 chr1 88980777 88980893 -108214539 - B1F SINE Alu -15 134 9 8 1263 234 336 0 56 chr1 88981072 88981198 -108214234 - PB1D9 SINE Alu -1 119 1 8 1263 511 169 23 43 chr1 88981310 88981427 -108214005 + B1_Mur3 SINE Alu 19 136 -13 8 1263 662 177 101 84 chr1 88981546 88981725 -108213707 - MTD LTR MaLR -38 381 200 8 1263 288 210 0 0 chr1 88981760 88981822 -108213610 - RMER19C LTR ERVK -549 62 1 8 1263 429 143 0 0 chr1 88982524 88982594 -108212838 - B1_Mur3 SINE Alu -7 142 73 8 1263 232 310 109 10 chr1 88983348 88983449 -108211983 + PB1D10 SINE Alu 1 111 -6 8 1263 316 164 18 0 chr1 88986468 88986523 -108208909 + B1_Mur4 SINE Alu 18 73 -77 8 1263 609 190 25 8 chr1 88987357 88987479 -108207953 + B1_Mur4 SINE Alu 18 141 -9 8 1263 973 40 8 0 chr1 88987529 88987655 -108207777 + B1_Mus1 SINE Alu 22 148 0 8 1263 290 311 7 118 chr1 88987640 88987659 -108207773 + MT2B LTR ERVL 134 152 -449 8 1263 275 19 37 37 chr1 88987659 88987713 -108207719 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 8 1263 290 311 7 118 chr1 88987713 88987846 -108207586 + MT2B LTR ERVL 153 268 -333 8 1263 642 200 8 8 chr1 88987731 88987857 -108207575 + B1_Mur3 SINE Alu 1 126 -23 8 1263 692 123 222 99 chr1 88987872 88987884 -108207548 - B2_Mm2 SINE B2 -2 193 182 8 1263 1177 35 28 0 chr1 88987884 88988026 -108207406 - B1_Mm SINE Alu 0 147 2 8 1263 692 123 222 99 chr1 88988026 88988044 -108207388 - B2_Mm2 SINE B2 -14 181 164 8 1263 180 0 0 0 chr1 88988044 88988064 -108207368 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 1263 692 123 222 99 chr1 88988064 88988203 -108207229 - B2_Mm2 SINE B2 -32 163 3 8 1263 822 192 14 0 chr1 88988385 88988531 -108206901 + B1_Mur3 SINE Alu 2 149 0 9 1263 210 205 0 0 chr1 88988744 88988783 -108206649 + B1_Mus2 SINE Alu 1 39 -108 9 1263 225 0 0 0 chr1 88988859 88988884 -108206548 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 9 1263 369 244 110 25 chr1 88989097 88989215 -108206217 + B1F SINE Alu 9 136 -13 9 1263 612 146 0 0 chr1 88989215 88989318 -108206114 + (TAG)n Simple_repeat Simple_repeat 2 104 0 9 1263 560 130 109 10 chr1 88989433 88989534 -108205898 - B1_Mur2 SINE Alu -2 147 37 9 1263 333 293 105 8 chr1 88989703 88989827 -108205605 - B1F1 SINE Alu -1 148 13 9 1263 352 336 8 0 chr1 88989869 88989988 -108205444 - PB1D9 SINE Alu 0 120 1 9 1263 684 204 15 0 chr1 88990029 88990166 -108205266 - ID_B1 SINE B4 -5 219 81 9 1263 450 283 8 0 chr1 88990168 88990288 -108205144 - ID_B1 SINE B4 -2 222 102 9 1263 232 373 48 21 chr1 88990288 88990308 -108205124 - B1_Mur4 SINE Alu 0 145 2 9 1263 998 266 5 0 chr1 88990348 88990562 -108204870 - ID_B1 SINE B4 -8 216 2 9 1263 304 212 62 12 chr1 88990567 88990648 -108204784 - L1MD LINE L1 -651 5591 5507 9 1263 1137 121 0 0 chr1 88990958 88991131 -108204301 + B2_Mm2 SINE B2 1 173 -22 9 1263 241 308 92 17 chr1 88991307 88991426 -108204006 + B1F2 SINE Alu 1 128 -21 9 1263 434 280 194 0 chr1 88991428 88991614 -108203818 + ID_B1 SINE B4 3 224 0 9 1263 414 125 0 0 chr1 88991708 88991788 -108203644 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1263 261 0 0 0 chr1 88994343 88994372 -108201060 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1264 476 264 128 75 chr1 88999171 88999359 -108196073 + B3A SINE B2 1 198 0 9 1264 34 24 0 0 chr1 88999359 88999400 -108196032 + AT_rich Low_complexity Low_complexity 1 41 0 9 1264 1855 138 77 34 chr1 89000670 89001022 -108194410 + ORR1B2 LTR MaLR 1 367 0 1 1264 275 203 33 33 chr1 89001178 89001239 -108194193 + ID4_ SINE ID 23 83 0 2 1264 355 295 0 0 chr1 89001383 89001461 -108193971 + B1F SINE Alu 2 79 -70 3 1264 250 312 39 0 chr1 89001463 89001540 -108193892 + ID4_ SINE ID 2 81 -2 4 1264 242 56 28 0 chr1 89001849 89001885 -108193547 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5 1264 987 129 82 0 chr1 89002014 89002184 -108193248 - B2_Mm1t SINE B2 -8 185 2 6 1264 1179 160 10 5 chr1 89002220 89002427 -108193005 + B3 SINE B2 6 213 -3 7 1264 329 317 105 31 chr1 89003245 89003473 -108191959 - L1MD LINE L1 -503 5739 5495 8 1264 461 202 150 30 chr1 89003731 89003864 -108191568 + B1F2 SINE Alu 1 149 0 9 1264 23 0 0 0 chr1 89003989 89004012 -108191420 + AT_rich Low_complexity Low_complexity 1 23 0 1 1264 522 67 0 0 chr1 89004016 89004091 -108191341 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1264 336 230 47 124 chr1 89004091 89004220 -108191212 - RSINE1 SINE B4 -45 120 2 1 1264 643 175 26 0 chr1 89004244 89004358 -108191074 - B1F SINE Alu 0 149 33 1 1264 248 279 62 12 chr1 89004299 89004379 -108191053 - 4.5SRNA scRNA scRNA -6 88 5 1 1264 502 169 63 70 chr1 89004445 89004574 -108190858 + B1_Mur1 SINE Alu 1 118 -2 1 1264 390 129 0 0 chr1 89004574 89004636 -108190796 + (TAG)n Simple_repeat Simple_repeat 1 62 0 1 1264 259 356 51 24 chr1 89004756 89005009 -108190423 - MER57A-int LTR ERV1 -803 5384 5125 1 1264 23 0 0 0 chr1 89005654 89005677 -108189755 + AT_rich Low_complexity Low_complexity 1 23 0 1 1264 415 235 10 19 chr1 89005843 89005947 -108189485 + MER34B-int LTR ERV1 2010 2112 -3244 1 1264 848 140 203 56 chr1 89006106 89006303 -108189129 - URR1A DNA MER1_type 0 226 1 2 1264 634 200 30 8 chr1 89006460 89006591 -108188841 - B1F SINE Alu -13 136 3 2 1264 238 341 72 12 chr1 89006747 89006830 -108188602 + B3A SINE B2 85 172 -26 2 1264 357 43 0 0 chr1 89006832 89006879 -108188553 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1264 261 135 0 0 chr1 89006879 89006931 -108188501 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1264 450 206 10 10 chr1 89006970 89007068 -108188364 + PB1D10 SINE Alu 19 116 -1 2 1264 325 257 0 13 chr1 89007154 89007229 -108188203 + PB1D7 SINE Alu 1 74 -46 2 1264 393 325 63 25 chr1 89007331 89007489 -108187943 - RSINE1 SINE B4 0 165 2 2 1264 437 295 71 7 chr1 89007575 89007715 -108187717 + B1F2 SINE Alu 1 149 0 2 1264 335 214 54 198 chr1 89007729 89007761 -108187671 - B2_Mm2 SINE B2 -5 190 165 2 1264 222 37 0 0 chr1 89007761 89007788 -108187644 + (TAG)n Simple_repeat Simple_repeat 2 28 0 3 1264 572 256 56 66 chr1 89007788 89007977 -108187455 - B3A SINE B2 -10 188 1 2 1264 676 227 0 0 chr1 89008130 89008262 -108187170 - ID_B1 SINE B4 -7 217 86 3 1264 282 56 0 0 chr1 89008910 89008946 -108186486 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1264 910 104 0 15 chr1 89008946 89009083 -108186349 - B1_Mus1 SINE Alu -13 135 1 3 1264 416 267 95 0 chr1 89009086 89009191 -108186241 - PB1D10 SINE Alu 0 117 3 3 1264 740 194 7 28 chr1 89009302 89009445 -108185987 - B1_Mur3 SINE Alu -9 140 1 3 1264 647 252 0 0 chr1 89009448 89009587 -108185845 - ID_B1 SINE B4 -2 222 84 3 1264 566 245 56 21 chr1 89009772 89009914 -108185518 - RSINE1 SINE B4 -17 148 2 3 1264 565 266 114 58 chr1 89010021 89010120 -108185312 + MER57A-int LTR ERV1 3189 3282 -2905 3 1264 528 233 77 8 chr1 89010120 89010250 -108185182 - B1F2 SINE Alu -6 143 5 3 1264 565 266 112 57 chr1 89010250 89010572 -108184860 + MER57A-int LTR ERV1 3215 3605 -2582 3 1264 333 306 19 0 chr1 89010584 89010692 -108184740 + PB1D10 SINE Alu 1 110 -7 4 1264 484 287 27 20 chr1 89010727 89010873 -108184559 + B1F SINE Alu 3 149 0 4 1264 1005 77 154 0 chr1 89011110 89011266 -108184166 + B2_Mm2 SINE B2 2 181 -14 4 1264 261 314 23 0 chr1 89011308 89011394 -108184038 + G-rich Low_complexity Low_complexity 5 92 0 4 1264 206 163 23 23 chr1 89011707 89011751 -108183681 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1264 240 35 0 0 chr1 89011755 89011784 -108183648 + (TTG)n Simple_repeat Simple_repeat 1 29 0 4 1264 1056 145 38 0 chr1 89011784 89011965 -108183467 - RLTR14 LTR ERV1 -3 379 192 4 1264 216 0 0 0 chr1 89011973 89011997 -108183435 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 4 1264 180 77 0 0 chr1 89012058 89012084 -108183348 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1264 333 226 140 0 chr1 89012091 89012184 -108183248 - U6 snRNA snRNA 0 107 2 4 1264 326 243 168 108 chr1 89012184 89012387 -108183045 - B4A SINE B4 -76 216 2 5 1264 412 269 0 63 chr1 89012388 89012515 -108182917 - PB1D7 SINE Alu -1 119 1 5 1264 407 232 0 24 chr1 89012583 89012667 -108182765 + B3 SINE B2 1 82 -134 5 1264 486 0 0 0 chr1 89012806 89012860 -108182572 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 5 1264 897 100 0 0 chr1 89013145 89013275 -108182157 + (TTC)n Simple_repeat Simple_repeat 1 130 0 5 1264 681 166 7 14 chr1 89013277 89013424 -108182008 + CT-rich Low_complexity Low_complexity 1 146 0 5 1264 1283 72 22 6 chr1 89013424 89013605 -108181827 - B2_Mm2 SINE B2 -10 185 2 5 1264 344 330 62 0 chr1 89013772 89013884 -108181548 - RSINE1 SINE B4 -42 123 5 5 1264 625 214 83 8 chr1 89013904 89014036 -108181396 - B1_Mur1 SINE Alu -7 142 1 5 1264 240 333 14 0 chr1 89014167 89014236 -108181196 + MLT1A LTR MaLR 20 89 -285 5 1264 513 235 0 40 chr1 89014232 89014246 -108181186 - ID_B1 SINE B4 -1 223 211 6 1264 213 65 0 0 chr1 89014246 89014277 -108181155 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1264 513 235 0 40 chr1 89014277 89014386 -108181046 - ID_B1 SINE B4 -14 210 105 6 1264 806 258 45 50 chr1 89014457 89014677 -108180755 + ID_B1 SINE B4 6 224 0 6 1264 273 242 52 10 chr1 89014926 89015022 -108180410 + MER57A-int LTR ERV1 2904 3003 -2353 6 1264 681 158 22 15 chr1 89015022 89015157 -108180275 + RLTR15 LTR ERVK 1 136 -223 6 1264 281 260 130 0 chr1 89015181 89015258 -108180174 + B1F SINE Alu 26 112 -37 6 1264 573 167 10 10 chr1 89015299 89015402 -108180030 - B1_Mur1 SINE Alu -1 148 46 6 1264 363 297 45 6 chr1 89015470 89015646 -108179786 + MER57A-int LTR ERV1 3091 3273 -2914 6 1264 634 129 14 28 chr1 89016018 89016161 -108179271 + CT-rich Low_complexity Low_complexity 4 144 0 6 1264 790 207 88 21 chr1 89016177 89016369 -108179063 - ID_B1 SINE B4 -15 209 5 6 1264 566 325 55 92 chr1 89016461 89016766 -108178666 + ORR1E LTR MaLR 39 365 -14 6 1264 398 221 36 7 chr1 89016836 89016939 -108178493 + PB1D9 SINE Alu 2 120 0 7 1264 295 325 8 31 chr1 89017263 89017390 -108178042 + MER57-int LTR ERV1 5630 5753 -1784 7 1264 310 306 185 9 chr1 89017729 89017940 -108177492 + L1MD2 LINE L1 5871 6118 -241 7 1264 311 109 0 68 chr1 89017951 89018010 -108177422 + B1F1 SINE Alu 1 55 -94 7 1264 256 197 40 53 chr1 89018010 89018023 -108177409 + B4A SINE B4 86 156 -136 7 1264 374 301 68 20 chr1 89018101 89018247 -108177185 + B3A SINE B2 46 198 0 7 1264 580 218 112 33 chr1 89018459 89018611 -108176821 + RSINE1 SINE B4 2 165 0 7 1264 280 223 107 0 chr1 89018847 89018950 -108176482 + L1MA5 LINE L1 6155 6268 -32 7 1264 617 239 43 55 chr1 89019312 89019331 -108176101 - B3A SINE B2 -36 162 149 7 1264 233 75 0 24 chr1 89019331 89019372 -108176060 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1264 720 192 35 8 chr1 89019372 89019516 -108175916 - B3 SINE B2 -50 148 1 7 1264 706 246 64 0 chr1 89019542 89019713 -108175719 - B3A SINE B2 -16 182 1 8 1264 307 277 0 0 chr1 89019785 89019868 -108175564 - L1MB3 LINE L1 -280 5903 5821 8 1264 295 203 0 72 chr1 89019930 89019999 -108175433 - ID4_ SINE ID -2 81 18 8 1264 238 294 23 23 chr1 89019999 89020010 -108175422 - B4 SINE B4 -200 64 6 8 1264 234 0 0 0 chr1 89020040 89020066 -108175366 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 1264 638 246 0 0 chr1 89020066 89020192 -108175240 - B1F2 SINE Alu -10 139 14 8 1264 244 321 93 19 chr1 89020099 89020207 -108175225 - B4A SINE B4 -97 195 80 8 1264 234 273 65 0 chr1 89020196 89020273 -108175159 - ID_B1 SINE B4 -38 186 105 8 1264 1032 36 15 0 chr1 89020346 89020483 -108174949 - B1_Mm SINE Alu 0 147 9 8 1264 323 171 29 0 chr1 89022644 89022714 -108172718 + G-rich Low_complexity Low_complexity 1 72 0 8 1264 201 278 26 65 chr1 89023748 89023825 -108171607 + MIRb SINE MIR 119 192 -76 9 1264 351 44 0 0 chr1 89024334 89024379 -108171053 + (CCA)n Simple_repeat Simple_repeat 2 46 0 9 1264 267 240 120 0 chr1 89025315 89025390 -108170042 - BC1_Mm scRNA scRNA -63 89 6 9 1264 240 200 0 0 chr1 89025396 89025446 -108169986 + CT-rich Low_complexity Low_complexity 3 52 0 9 1264 446 250 11 0 chr1 89025450 89025542 -108169890 - PB1D7 SINE Alu -26 94 2 9 1264 1234 264 113 42 chr1 89026072 89026566 -108168866 - Charlie7 DNA MER1_type -144 2468 1940 9 1264 214 312 114 44 chr1 89026783 89026897 -108168535 + RSINE1 SINE B4 6 127 -38 9 1264 455 118 13 0 chr1 89026909 89026985 -108168447 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 1264 288 0 0 0 chr1 89026991 89027023 -108168409 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 9 1264 811 27 0 35 chr1 89027038 89027153 -108168279 - B2_Mm1t SINE B2 0 193 83 9 1264 383 132 15 0 chr1 89027153 89027221 -108168211 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1264 288 0 0 0 chr1 89027227 89027259 -108168173 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1264 1454 52 0 25 chr1 89027273 89027469 -108167963 - B2_Mm1t SINE B2 -1 192 2 1 1264 947 148 0 0 chr1 89027472 89027621 -108167811 - B1_Mur4 SINE Alu 0 150 2 1 1264 368 314 183 47 chr1 89027691 89027948 -108167484 + B4A SINE B4 1 292 0 1 1264 230 257 92 26 chr1 89027884 89027960 -108167472 + B3A SINE B2 109 189 -9 1 1264 582 237 71 7 chr1 89028174 89028314 -108167118 + B1F SINE Alu 1 149 0 1 1264 237 152 45 15 chr1 89028361 89028428 -108167004 + GA-rich Low_complexity Low_complexity 2 70 0 1 1264 237 248 5 40 chr1 89028429 89028510 -108166922 + Alu SINE Alu 33 106 -14 1 1264 2403 273 44 80 chr1 89028547 89029515 -108165917 - Charlie7 DNA MER1_type -1018 1594 661 9 1264 342 0 0 0 chr1 89029567 89029605 -108165827 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1264 536 215 8 40 chr1 89029605 89029731 -108165701 - RSINE1 SINE B4 -41 124 3 1 1264 555 56 0 0 chr1 89029814 89029885 -108165547 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1264 605 270 13 7 chr1 89029983 89030136 -108165296 - Charlie7 DNA MER1_type -2186 426 273 9 1264 1065 145 0 0 chr1 89030246 89030425 -108165007 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1264 2030 122 41 41 chr1 89030494 89030861 -108164571 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1264 337 22 22 0 chr1 89030861 89030907 -108164525 - IAPEz-int LTR ERVK 0 6481 6435 1 1264 52661 14 7 8 chr1 89030906 89037057 -108158375 - IAPEz-int LTR ERVK -331 6150 8 1 1264 2030 122 41 41 chr1 89037057 89037424 -108158008 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1264 839 269 9 60 chr1 89037533 89037766 -108157666 - B4 SINE B4 -69 223 3 1 1264 695 245 174 0 chr1 89037796 89037980 -108157452 - ID_B1 SINE B4 -5 219 4 1 1264 267 281 101 8 chr1 89039073 89039202 -108156230 + L3 LINE CR1 3765 3905 -584 1 1264 302 261 16 16 chr1 89040544 89040572 -108154860 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1264 201 108 0 0 chr1 89040572 89040609 -108154823 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 1 1264 356 271 0 0 chr1 89040609 89040718 -108154714 + CT-rich Low_complexity Low_complexity 1 109 0 1 1264 323 191 12 36 chr1 89040720 89040888 -108154544 + (TCTCTG)n Simple_repeat Simple_repeat 3 166 0 1 1264 536 253 17 138 chr1 89041166 89041340 -108154092 - ID_B1 SINE B4 -4 220 68 1 1264 209 185 0 36 chr1 89041521 89041577 -108153855 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 1 1264 285 109 0 0 chr1 89045018 89045064 -108150368 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 1 1264 348 24 0 0 chr1 89045528 89045569 -108149863 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1264 747 265 73 18 chr1 89046774 89046993 -108148439 + MTD LTR MaLR 1 231 -188 1 1264 183 256 0 0 chr1 89047950 89047989 -108147443 + L2a LINE L2 3375 3413 -13 1 1264 25 90 0 0 chr1 89052696 89052763 -108142669 + GC_rich Low_complexity Low_complexity 1 67 0 1 1264 511 236 1 19 chr1 89055662 89055786 -108139646 - PB1 SINE Alu -3 124 1 1 1264 30 0 0 0 chr1 89055796 89055826 -108139606 + AT_rich Low_complexity Low_complexity 1 30 0 1 1264 863 158 7 0 chr1 89055827 89055966 -108139466 - B1_Mus2 SINE Alu -6 141 2 1 1264 343 70 52 17 chr1 89056216 89056274 -108139158 - HAL1-3A_ME LINE L1 -824 2034 1975 1 1264 749 155 12 0 chr1 89056276 89056437 -108138995 + (TATG)n Simple_repeat Simple_repeat 4 166 0 1 1264 953 119 0 11 chr1 89056448 89056627 -108138805 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1264 1063 246 27 41 chr1 89056665 89056958 -108138474 - B4 SINE B4 -1 291 3 1 1264 206 363 116 23 chr1 89056988 89057160 -108138272 + L2b LINE L2 2931 3118 -257 1 1264 438 302 144 0 chr1 89057291 89057430 -108138002 - B4 SINE B4 -133 159 1 1 1264 999 317 100 38 chr1 89059015 89059595 -108135837 - MLT1E3 LTR MaLR -1 623 8 1 1264 655 178 161 62 chr1 89059680 89059842 -108135590 + MTD LTR MaLR 13 190 -229 1 1264 289 179 36 0 chr1 89059835 89059891 -108135541 + MTD LTR MaLR 362 419 0 1 1264 252 348 93 27 chr1 89059892 89060075 -108135357 - MIR SINE MIR -45 217 23 1 1264 1212 48 0 7 chr1 89060368 89060514 -108134918 + B1_Mm SINE Alu 3 147 0 1 1264 227 338 12 37 chr1 89062479 89062642 -108132790 + (CACCAT)n Simple_repeat Simple_repeat 6 164 0 1 1264 658 231 134 70 chr1 89063075 89063261 -108132171 + B3 SINE B2 10 207 -9 1 1264 480 291 154 23 chr1 89063544 89063804 -108131628 - MLT1A0 LTR MaLR -71 294 1 1 1264 198 71 0 0 chr1 89064211 89064239 -108131193 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1264 317 312 92 0 chr1 89064645 89064759 -108130673 + MIRb SINE MIR 41 170 -98 1 1264 194 184 0 0 chr1 89065037 89065075 -108130357 + MIRc SINE MIR 114 151 -117 1 1264 639 211 0 0 chr1 89065164 89065325 -108130107 + (CA)n Simple_repeat Simple_repeat 1 161 0 1 1264 523 230 65 34 chr1 89065649 89065863 -108129569 - MIR SINE MIR -4 264 45 1 1264 181 100 0 70 chr1 89066257 89066300 -108129132 + G-rich Low_complexity Low_complexity 2 41 0 1 1264 198 0 0 0 chr1 89066732 89066754 -108128678 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1264 370 259 60 53 chr1 89067930 89068081 -108127351 - MIRb SINE MIR -115 153 2 1 1264 321 221 176 24 chr1 89068612 89068737 -108126695 + MIRb SINE MIR 88 231 -37 1 1264 220 176 39 0 chr1 89070123 89070174 -108125258 + MIRc SINE MIR 96 148 -120 1 1264 203 293 0 0 chr1 89070365 89070423 -108125009 + G-rich Low_complexity Low_complexity 1 58 0 1 1264 432 281 105 12 chr1 89070604 89070766 -108124666 + ID_B1 SINE B4 2 178 -46 1 1264 493 300 0 0 chr1 89071665 89071795 -108123637 - RSINE1 SINE B4 -33 132 3 1 1264 216 0 0 0 chr1 89071807 89071831 -108123601 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1264 1150 128 56 0 chr1 89071860 89072013 -108123419 + B2_Mm2 SINE B2 1 159 -36 1 1264 252 0 0 0 chr1 89072013 89072041 -108123391 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1264 1150 128 56 0 chr1 89072041 89072066 -108123366 + B2_Mm2 SINE B2 160 188 -7 1 1264 369 0 0 0 chr1 89073533 89073574 -108121858 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1264 603 40 0 0 chr1 89073781 89073855 -108121577 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1 1264 260 27 27 0 chr1 89074588 89074625 -108120807 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1264 257 311 128 28 chr1 89074830 89074939 -108120493 + PB1 SINE Alu 8 127 0 1 1264 349 303 97 35 chr1 89074953 89075179 -108120253 - HAL1b LINE L1 -100 1909 1670 1 1264 390 156 36 127 chr1 89075206 89075316 -108120116 - ID_B1 SINE B4 -15 209 110 1 1264 610 206 94 14 chr1 89075379 89075410 -108120022 + B1F SINE Alu 1 31 -118 1 1264 459 0 0 0 chr1 89075410 89075461 -108119971 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1264 610 206 94 14 chr1 89075461 89075567 -108119865 + B1F SINE Alu 32 148 -1 1 1264 1037 247 143 3 chr1 89075657 89075978 -108119454 - MTEb LTR MaLR -13 366 1 1 1264 211 315 9 36 chr1 89076057 89076169 -108119263 + GA-rich Low_complexity Low_complexity 5 113 0 1 1264 240 302 40 40 chr1 89076179 89076279 -108119153 + PB1 SINE Alu 23 122 -5 1 1264 351 0 0 0 chr1 89076279 89076318 -108119114 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1264 238 303 68 76 chr1 89076320 89076438 -108118994 + PB1D7 SINE Alu 4 120 0 1 1264 286 210 185 74 chr1 89076337 89076445 -108118987 + ID_B1 SINE B4 105 224 0 1 1264 704 136 0 22 chr1 89076553 89076688 -108118744 + GA-rich Low_complexity Low_complexity 3 134 0 1 1264 307 231 51 0 chr1 89077524 89077602 -108117830 - MLT1B LTR MaLR -308 82 1 1 1264 434 217 0 0 chr1 89077924 89078007 -108117425 - B1F2 SINE Alu -22 127 45 1 1264 186 43 0 0 chr1 89078645 89078668 -108116764 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1 1264 222 37 0 0 chr1 89081668 89081695 -108113737 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 1 1264 221 132 0 86 chr1 89083352 89083410 -108112022 + G-rich Low_complexity Low_complexity 4 56 0 1 1264 500 258 67 0 chr1 89085089 89085209 -108110223 + B1F SINE Alu 1 128 -21 1 1264 695 224 51 68 chr1 89085256 89085491 -108109941 + B4A SINE B4 1 231 -61 1 1264 284 237 320 56 chr1 89086457 89086582 -108108850 + RSINE1 SINE B4 3 160 -5 1 1264 276 30 0 0 chr1 89086586 89086619 -108108813 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 1 1264 240 35 0 0 chr1 89086619 89086648 -108108784 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1 1264 889 137 28 14 chr1 89086659 89086800 -108108632 - B1_Mus2 SINE Alu -4 143 1 1 1264 351 0 0 0 chr1 89086950 89086989 -108108443 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1264 206 214 0 0 chr1 89087000 89087042 -108108390 + (CACCC)n Simple_repeat Simple_repeat 3 44 0 1 1264 645 197 8 30 chr1 89088347 89088478 -108106954 - B1_Mur1 SINE Alu -2 147 20 1 1264 214 311 33 0 chr1 89088586 89088647 -108106785 - MER91B DNA Tip100 -127 63 1 1 1264 339 85 0 0 chr1 89089863 89089910 -108105522 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 1 1264 564 292 0 27 chr1 89090127 89090275 -108105157 + B1F1 SINE Alu 6 149 0 1 1264 463 311 42 0 chr1 89090275 89090394 -108105038 + RSINE1 SINE B4 1 124 -41 1 1264 447 19 0 0 chr1 89090394 89090446 -108104986 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1264 261 286 16 0 chr1 89090465 89090528 -108104904 + B4A SINE B4 83 146 -146 1 1264 411 235 16 28 chr1 89090475 89090596 -108104836 + PB1D10 SINE Alu 9 131 -18 1 1264 485 241 119 88 chr1 89090619 89090778 -108104654 - RSINE1 SINE B4 0 165 2 1 1264 913 197 89 25 chr1 89090856 89091059 -108104373 - B3 SINE B2 0 216 1 1 1264 224 305 12 47 chr1 89091856 89091942 -108103490 - MIR SINE MIR -135 127 45 1 1264 378 0 0 0 chr1 89092500 89092542 -108102890 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1264 665 296 6 6 chr1 89092542 89092705 -108102727 + RSINE1 SINE B4 3 165 0 1 1264 273 175 0 24 chr1 89092988 89093050 -108102382 + ID SINE ID 12 68 -224 2 1264 451 182 0 0 chr1 89093062 89093139 -108102293 + ID_B1 SINE B4 132 208 -16 2 1264 1139 54 0 29 chr1 89093141 89093313 -108102119 + (GGGA)n Simple_repeat Simple_repeat 4 170 0 2 1264 288 0 0 0 chr1 89093315 89093347 -108102085 + (GGA)n Simple_repeat Simple_repeat 1 32 0 2 1264 318 282 0 0 chr1 89093399 89093470 -108101962 - PB1D10 SINE Alu -46 71 1 2 1264 1208 36 0 0 chr1 89093497 89093635 -108101797 - B1_Mm SINE Alu -8 139 2 2 1264 217 206 89 0 chr1 89094544 89094690 -108100742 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 1264 256 226 34 17 chr1 89094615 89094732 -108100700 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 2 1264 306 203 145 0 chr1 89094786 89094855 -108100577 - ID4_ SINE ID -3 80 2 2 1264 411 238 38 38 chr1 89096007 89096112 -108099320 - MER53 DNA hAT -88 105 1 2 1264 269 227 152 0 chr1 89096329 89096395 -108099037 + B1_Mus1 SINE Alu 9 84 -64 2 1264 396 0 0 0 chr1 89096399 89096443 -108098989 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1264 1500 50 39 0 chr1 89096922 89097104 -108098328 - B2_Mm2 SINE B2 -5 190 2 2 1264 3832 158 88 84 chr1 89097104 89097700 -108097732 - RMER19B LTR ERVK -16 886 237 2 1264 486 0 0 0 chr1 89097700 89097754 -108097678 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1264 3832 158 88 84 chr1 89097754 89098039 -108097393 - RMER19B LTR ERVK -666 236 2 2 1264 526 319 67 20 chr1 89099060 89099255 -108096177 + ID_B1 SINE B4 15 218 -6 2 1264 327 316 0 57 chr1 89099309 89099433 -108095999 + RSINE1 SINE B4 4 120 -45 2 1264 862 131 54 0 chr1 89099434 89099564 -108095868 + B1_Mus2 SINE Alu 2 138 -9 2 1264 375 23 0 0 chr1 89099591 89099635 -108095797 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1264 739 160 82 22 chr1 89099687 89099821 -108095611 - B1_Mur3 SINE Alu -7 142 1 2 1264 2024 179 18 18 chr1 89099869 89100266 -108095166 - MTD LTR MaLR -8 411 15 2 1264 317 85 0 0 chr1 89100958 89101005 -108094427 + B1_Mus1 SINE Alu 36 82 -66 2 1264 237 83 0 0 chr1 89101580 89101616 -108093816 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1264 222 37 0 0 chr1 89103589 89103616 -108091816 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1264 194 233 65 32 chr1 89104405 89104467 -108090965 + MIR SINE MIR 85 148 -60 2 1264 300 276 153 0 chr1 89104997 89105095 -108090337 + PB1D10 SINE Alu 3 115 -2 2 1264 623 293 135 25 chr1 89105102 89105347 -108090085 + B4A SINE B4 2 273 -19 2 1264 396 59 0 0 chr1 89105353 89105404 -108090028 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1264 180 70 22 44 chr1 89105923 89105968 -108089464 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 2 1264 478 312 22 38 chr1 89106620 89106803 -108088629 - MIR SINE MIR -57 205 26 2 1264 622 249 67 51 chr1 89108368 89108391 -108087041 - B3A SINE B2 0 198 184 2 1264 246 128 0 0 chr1 89108391 89108430 -108087002 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2 1264 622 249 67 51 chr1 89108430 89108601 -108086831 - B3A SINE B2 -15 183 2 2 1264 463 192 152 0 chr1 89108677 89108776 -108086656 + PB1D9 SINE Alu 1 114 -6 2 1264 792 243 95 0 chr1 89108793 89108982 -108086450 + B3 SINE B2 10 216 0 2 1264 261 0 0 0 chr1 89109259 89109288 -108086144 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1264 1252 47 0 0 chr1 89109297 89109445 -108085987 + B1_Mus1 SINE Alu 1 148 0 2 1264 346 277 78 10 chr1 89110107 89110209 -108085223 - ID_B1 SINE B4 -17 207 99 2 1264 22 0 0 0 chr1 89110652 89110674 -108084758 + GC_rich Low_complexity Low_complexity 1 22 0 2 1264 24 67 0 0 chr1 89110786 89110831 -108084601 + GC_rich Low_complexity Low_complexity 1 45 0 2 1264 213 343 43 28 chr1 89110958 89111099 -108084333 + MIRb SINE MIR 83 225 -43 2 1264 318 111 18 18 chr1 89111990 89112045 -108083387 - ORR1C1 LTR MaLR 0 384 330 2 1264 1184 57 0 0 chr1 89112082 89112222 -108083210 - B1_Mur4 SINE Alu -9 141 2 2 1264 630 143 9 19 chr1 89112275 89112382 -108083050 - ORR1C1 LTR MaLR -272 106 1 2 1264 247 370 11 0 chr1 89112607 89112699 -108082733 - MIRb SINE MIR -81 187 95 2 1264 1010 159 71 0 chr1 89112834 89113016 -108082416 - B2_Mm2 SINE B2 0 195 1 2 1264 496 216 141 23 chr1 89113865 89113993 -108081439 + B1_Mur2 SINE Alu 1 143 -6 2 1264 231 318 0 0 chr1 89114035 89114101 -108081331 + ID4_ SINE ID 16 81 -2 2 1264 296 263 13 0 chr1 89115179 89115255 -108080177 - RSINE1 SINE B4 -77 88 12 2 1264 23 54 0 0 chr1 89115978 89116015 -108079417 + AT_rich Low_complexity Low_complexity 1 37 0 2 1264 234 257 120 13 chr1 89116448 89116523 -108078909 + ID4_ SINE ID 1 83 0 2 1264 393 269 100 8 chr1 89116881 89117001 -108078431 - B1F1 SINE Alu -16 133 3 2 1264 572 242 199 54 chr1 89117217 89117383 -108078049 + B3A SINE B2 1 190 -8 2 1264 284 252 121 73 chr1 89118171 89118295 -108077137 - PB1D10 SINE Alu -13 136 7 2 1264 270 167 277 60 chr1 89118556 89118639 -108076793 + B1_Mur4 SINE Alu 46 146 -4 2 1264 435 180 122 11 chr1 89118807 89118897 -108076535 - B1F2 SINE Alu -6 143 44 2 1264 892 265 10 0 chr1 89118924 89119120 -108076312 - B3A SINE B2 0 198 1 2 1264 933 9 0 0 chr1 89119145 89119254 -108076178 - B1_Mus1 SINE Alu -1 147 39 2 1264 312 236 27 14 chr1 89119419 89119492 -108075940 - PB1D10 SINE Alu -3 114 41 2 1264 384 250 227 35 chr1 89119515 89119656 -108075776 + B3A SINE B2 31 198 0 2 1264 877 196 73 37 chr1 89119696 89119737 -108075695 - B3A SINE B2 0 198 145 2 1264 213 39 0 0 chr1 89119737 89119763 -108075669 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2 1264 877 196 73 37 chr1 89119763 89119912 -108075520 - B3A SINE B2 -54 144 1 2 1264 272 261 156 22 chr1 89119938 89120028 -108075404 - PB1D9 SINE Alu 0 120 19 2 1264 254 259 0 16 chr1 89120106 89120183 -108075249 + B1F SINE Alu 45 149 0 2 1264 839 217 43 19 chr1 89120376 89120583 -108074849 - B3 SINE B2 -3 213 2 2 1264 195 100 0 0 chr1 89120612 89120642 -108074790 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1264 409 192 182 0 chr1 89120661 89120760 -108074672 + PB1D10 SINE Alu 1 117 0 2 1264 1842 199 50 0 chr1 89121199 89121560 -108073872 - ORR1C2 LTR MaLR -2 382 4 2 1264 190 303 57 129 chr1 89121926 89122066 -108073366 + L2c LINE L2 3161 3290 -97 2 1264 279 278 116 61 chr1 89123496 89123692 -108071740 + MIRb SINE MIR 21 218 -44 2 1264 265 292 188 61 chr1 89126210 89126230 -108069202 - MT2B LTR ERVL -322 279 244 2 1264 290 190 253 0 chr1 89126230 89126309 -108069123 - B1F SINE Alu -45 104 6 2 1264 265 292 188 61 chr1 89126309 89126407 -108069025 - MT2B LTR ERVL -322 243 58 2 1264 26 0 0 0 chr1 89127658 89127684 -108067748 + AT_rich Low_complexity Low_complexity 1 26 0 2 1264 386 284 42 0 chr1 89127751 89127846 -108067586 - PB1D10 SINE Alu -8 109 11 2 1264 633 203 8 39 chr1 89127980 89128108 -108067324 + B1_Mur1 SINE Alu 2 125 -24 2 1265 568 320 28 23 chr1 89129924 89130100 -108065332 - B4A SINE B4 -100 192 16 2 1265 472 243 47 54 chr1 89130104 89130252 -108065180 - ID_B1 SINE B4 0 224 78 2 1265 578 281 16 0 chr1 89130282 89130410 -108065022 + B1F SINE Alu 3 132 -17 2 1265 373 247 60 30 chr1 89130899 89130999 -108064433 + PB1D10 SINE Alu 1 103 -14 2 1265 494 288 62 19 chr1 89131001 89131155 -108064277 + ID_B1 SINE B4 73 224 -68 2 1265 587 226 48 0 chr1 89132082 89132206 -108063226 + B1F2 SINE Alu 5 134 -15 2 1265 810 56 0 0 chr1 89136029 89136137 -108059295 + (TG)n Simple_repeat Simple_repeat 2 109 0 2 1265 841 294 9 9 chr1 89136988 89137211 -108058221 - ID_B1 SINE B4 0 224 2 2 1265 263 321 0 45 chr1 89137269 89137357 -108058075 - B1F2 SINE Alu -55 94 11 2 1265 1701 26 0 0 chr1 89137372 89137565 -108057867 - B2_Mm1t SINE B2 0 193 1 2 1265 230 128 77 0 chr1 89138048 89138087 -108057345 - ORR1A2 LTR MaLR -8 318 277 2 1265 1254 34 0 7 chr1 89138116 89138264 -108057168 - B1_Mm SINE Alu 0 147 1 2 1265 1400 79 21 0 chr1 89138267 89138456 -108056976 - B2_Mm1t SINE B2 0 193 1 2 1265 2095 80 7 0 chr1 89138456 89138730 -108056702 - ORR1A2 LTR MaLR -42 285 10 2 1265 515 177 115 0 chr1 89139212 89139308 -108056124 - PB1D10 SINE Alu -10 107 1 2 1265 488 227 27 9 chr1 89139374 89139485 -108055947 + PB1D10 SINE Alu 5 117 0 2 1265 338 254 199 0 chr1 89139497 89139688 -108055744 + L1MC1 LINE L1 5768 6021 -1764 2 1265 321 311 65 13 chr1 89139994 89140147 -108055285 - RSINE1 SINE B4 -2 163 3 2 1265 1309 52 40 6 chr1 89140183 89140358 -108055074 + B2_Mm2 SINE B2 1 181 -14 2 1265 554 263 85 0 chr1 89140422 89140540 -108054892 + RSINE1 SINE B4 16 143 -22 2 1265 956 211 50 30 chr1 89140590 89140790 -108054642 + B3 SINE B2 4 207 -9 2 1265 344 225 70 0 chr1 89140825 89140896 -108054536 - MTE2b LTR MaLR -280 99 24 2 1265 599 240 30 7 chr1 89141277 89141420 -108054012 + B1_Mur2 SINE Alu 2 146 -3 2 1265 527 175 39 0 chr1 89141519 89141622 -108053810 - B1F1 SINE Alu -14 135 29 2 1265 1321 58 20 50 chr1 89142303 89142339 -108053093 - B2_Mm1a SINE B2 0 193 161 2 1265 407 18 0 35 chr1 89142339 89142396 -108053036 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 2 1265 1321 58 20 50 chr1 89142396 89142558 -108052874 - B2_Mm1a SINE B2 -33 160 1 2 1265 291 214 0 0 chr1 89143256 89143326 -108052106 + CT-rich Low_complexity Low_complexity 1 70 0 2 1265 999 61 0 58 chr1 89143331 89143522 -108051910 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1265 288 296 25 0 chr1 89143585 89143666 -108051766 - ID4 SINE ID 0 83 1 3 1265 1105 80 0 0 chr1 89143813 89143950 -108051482 + B1_Mm SINE Alu 2 138 -9 3 1265 852 194 0 0 chr1 89144124 89144268 -108051164 - B1_Mur4 SINE Alu -6 144 1 3 1265 525 201 188 94 chr1 89144276 89144457 -108050975 - B3A SINE B2 0 198 1 3 1265 317 130 195 0 chr1 89144612 89144689 -108050743 - PB1D9 SINE Alu -8 112 21 3 1265 279 235 123 0 chr1 89144629 89144710 -108050722 - B4A SINE B4 -122 170 80 3 1265 279 236 8 39 chr1 89145410 89145427 -108050005 + ORR1B1-int LTR MaLR 631 643 -866 3 1265 861 68 0 33 chr1 89145427 89145549 -108049883 + B1_Mus1 SINE Alu 2 119 -29 3 1265 1020 180 113 0 chr1 89145939 89146133 -108049299 + B3 SINE B2 1 216 0 3 1265 1182 36 0 0 chr1 89146571 89146708 -108048724 + B1_Mus2 SINE Alu 2 138 -9 3 1265 351 0 0 0 chr1 89146708 89146747 -108048685 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1265 356 318 68 8 chr1 89147133 89147379 -108048053 + L1MB5 LINE L1 5184 5438 -741 3 1265 922 211 82 10 chr1 89147379 89147575 -108047857 + ID_B1 SINE B4 1 210 -14 3 1265 327 49 0 0 chr1 89147579 89147620 -108047812 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 3 1265 264 286 47 12 chr1 89147641 89147726 -108047706 + PB1D10 SINE Alu 27 114 -3 3 1265 392 216 103 0 chr1 89147726 89147823 -108047609 + U6 snRNA snRNA 1 107 0 3 1265 221 277 154 0 chr1 89147838 89147903 -108047529 + ID SINE ID 1 75 -149 3 1265 237 255 54 18 chr1 89147848 89147904 -108047528 + tRNA-Ala-GCA tRNA tRNA 12 69 -6 3 1265 237 33 0 0 chr1 89148387 89148417 -108047015 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1265 387 0 0 0 chr1 89148417 89148459 -108046973 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1265 723 223 35 14 chr1 89148463 89148604 -108046828 - B3A SINE B2 -54 144 1 3 1265 464 217 7 0 chr1 89149259 89149402 -108046030 + (CA)n Simple_repeat Simple_repeat 2 145 0 3 1265 430 315 56 8 chr1 89149473 89149748 -108045684 + L1MB2 LINE L1 5763 6055 -125 3 1265 357 161 105 58 chr1 89149751 89149837 -108045595 - B1F SINE Alu -57 92 3 3 1265 471 256 0 0 chr1 89149894 89149984 -108045448 + PB1D10 SINE Alu 19 108 -9 3 1265 406 146 24 0 chr1 89149998 89150080 -108045352 + GA-rich Low_complexity Low_complexity 2 85 0 3 1265 246 200 36 0 chr1 89150235 89150290 -108045142 - L1M5 LINE L1 -402 5762 5706 3 1265 264 292 115 64 chr1 89150487 89150644 -108044788 + MLT2B1 LTR ERVL 228 443 -124 3 1265 271 320 93 65 chr1 89150662 89150953 -108044479 + L1MB5 LINE L1 5558 5856 -322 3 1265 275 342 31 82 chr1 89151019 89151274 -108044158 - RMER4A LTR ERVK -200 266 25 3 1265 395 363 25 17 chr1 89151324 89151565 -108043867 + L1MB5 LINE L1 5889 6131 -43 3 1265 611 221 106 8 chr1 89151594 89151726 -108043706 + ID_B1 SINE B4 80 224 0 3 1265 420 71 0 0 chr1 89151726 89151782 -108043650 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1265 355 217 318 24 chr1 89152194 89152364 -108043068 - ID_B1 SINE B4 -3 221 2 3 1265 207 0 0 0 chr1 89152500 89152523 -108042909 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1265 264 310 59 42 chr1 89152575 89152693 -108042739 + LTR82A LTR ERVL 717 836 -36 3 1265 871 141 0 60 chr1 89152701 89152852 -108042580 + B1_Mur2 SINE Alu 2 143 -6 3 1265 626 253 85 37 chr1 89152939 89153128 -108042304 + B3A SINE B2 1 198 0 3 1265 1228 55 0 0 chr1 89153285 89153431 -108042001 - B1_Mm SINE Alu 0 147 2 3 1265 266 239 99 0 chr1 89153615 89153686 -108041746 + ID2 SINE ID 2 79 -4 3 1265 513 217 51 89 chr1 89153766 89153790 -108041642 + ID_B1 SINE B4 74 223 0 3 1265 838 85 76 23 chr1 89153790 89153922 -108041510 + B1_Mus1 SINE Alu 10 148 0 3 1265 206 122 13 51 chr1 89153925 89154003 -108041429 + A-rich Low_complexity Low_complexity 5 79 0 3 1265 367 299 0 0 chr1 89154681 89154758 -108040674 - ID4_ SINE ID -5 78 2 3 1265 426 285 113 8 chr1 89154769 89154893 -108040539 - B1F SINE Alu -8 141 5 3 1265 1412 75 37 11 chr1 89155516 89155706 -108039726 - B2_Mm2 SINE B2 0 195 1 3 1265 933 203 20 30 chr1 89155715 89155918 -108039514 + MTD LTR MaLR 207 407 -12 3 1265 215 255 39 0 chr1 89155924 89155975 -108039457 + PB1D9 SINE Alu 3 55 -65 3 1265 512 220 54 58 chr1 89156023 89156159 -108039273 - B1_Mus2 SINE Alu -8 140 1 3 1265 421 161 49 12 chr1 89156485 89156567 -108038865 - RLTR12A LTR ERVK -308 260 176 3 1265 2845 155 6 128 chr1 89156567 89157190 -108038242 - RLTR12A LTR ERVK -11 557 11 3 1265 42 20 0 0 chr1 89157437 89157486 -108037946 + AT_rich Low_complexity Low_complexity 1 49 0 3 1265 754 228 39 0 chr1 89157494 89157674 -108037758 - B3A SINE B2 -11 187 1 3 1265 530 214 79 6 chr1 89157711 89157834 -108037598 + MLT1G1 LTR MaLR 381 579 0 3 1265 589 256 7 29 chr1 89157862 89157999 -108037433 + ID_B1 SINE B4 83 216 -8 3 1265 393 22 0 0 chr1 89158000 89158046 -108037386 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1265 956 215 14 46 chr1 89158223 89158442 -108036990 - B3 SINE B2 -1 215 4 3 1265 567 134 0 47 chr1 89158524 89158625 -108036807 + B1_Mur2 SINE Alu 23 117 -3 3 1265 424 278 26 17 chr1 89158642 89158759 -108036673 - RSINE1 SINE B4 0 165 48 3 1265 2473 156 119 43 chr1 89158768 89159298 -108036134 + RMER15 LTR ERVL 6 575 0 3 1265 444 37 0 0 chr1 89159321 89159375 -108036057 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1265 270 248 235 52 chr1 89159473 89159588 -108035844 - B1F SINE Alu -7 142 7 3 1265 431 252 0 10 chr1 89159806 89159906 -108035526 - PB1D10 SINE Alu -18 99 1 3 1265 415 216 76 67 chr1 89162150 89162269 -108033163 + PB1D9 SINE Alu 1 120 0 3 1265 739 261 18 12 chr1 89162296 89162459 -108032973 - RSINE1 SINE B4 0 165 2 3 1265 262 288 161 63 chr1 89163225 89163399 -108032033 - MLT1K LTR MaLR -58 537 347 3 1265 680 128 22 8 chr1 89163555 89163689 -108031743 + C-rich Low_complexity Low_complexity 1 136 0 3 1265 314 321 123 7 chr1 89163689 89163827 -108031605 - HAL1-3A_ME LINE L1 -421 2437 2284 3 1265 292 133 33 0 chr1 89163829 89163889 -108031543 + CT-rich Low_complexity Low_complexity 1 62 0 3 1265 458 216 26 9 chr1 89164810 89164924 -108030508 - B1F SINE Alu 0 127 10 3 1265 315 271 10 50 chr1 89164837 89164938 -108030494 - ID_B1 SINE B4 -49 175 79 3 1265 838 251 70 47 chr1 89164942 89165147 -108030285 - ID_B1 SINE B4 0 224 15 3 1265 411 21 0 0 chr1 89165147 89165195 -108030237 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1265 504 0 0 0 chr1 89165727 89165783 -108029649 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1265 470 243 47 0 chr1 89165879 89165986 -108029446 - PB1D7 SINE Alu 0 120 9 3 1265 226 338 57 50 chr1 89166266 89166425 -108029007 - MLT1C LTR MaLR -8 459 300 3 1265 348 176 0 0 chr1 89166425 89166493 -108028939 + CT-rich Low_complexity Low_complexity 1 68 0 3 1265 425 242 103 108 chr1 89166494 89166707 -108028725 - MLT1C LTR MaLR -126 264 53 3 1265 402 101 0 0 chr1 89168201 89168270 -108027162 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1265 317 24 24 0 chr1 89169459 89169501 -108025931 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1265 361 235 29 0 chr1 89169535 89169603 -108025829 - ID4 SINE ID -11 72 3 3 1265 468 301 25 31 chr1 89169633 89169794 -108025638 - RSINE1 SINE B4 -5 160 1 3 1265 200 86 0 28 chr1 89169794 89169830 -108025602 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1265 387 60 0 0 chr1 89171129 89171179 -108024253 + (CATA)n Simple_repeat Simple_repeat 4 53 0 3 1265 806 150 16 0 chr1 89171213 89171340 -108024092 - B1_Mus1 SINE Alu -8 140 12 3 1265 884 218 67 26 chr1 89171421 89171614 -108023818 - ID_B1 SINE B4 -3 221 21 3 1265 295 252 24 126 chr1 89172434 89172497 -108022935 + B1F2 SINE Alu 1 55 -94 3 1265 746 170 56 7 chr1 89172497 89172639 -108022793 + B1_Mur4 SINE Alu 1 149 -1 3 1265 295 252 24 126 chr1 89172639 89172695 -108022737 + B1F2 SINE Alu 56 108 -41 3 1265 277 262 0 32 chr1 89172695 89172758 -108022674 + ID4_ SINE ID 4 64 -19 3 1265 279 0 0 0 chr1 89172922 89172953 -108022479 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1265 732 209 48 12 chr1 89174518 89174683 -108020749 - RMER30 DNA MER1_type -20 182 12 3 1265 212 185 19 0 chr1 89175523 89175577 -108019855 + CT-rich Low_complexity Low_complexity 3 57 0 3 1265 872 170 102 58 chr1 89175594 89175800 -108019632 - B3 SINE B2 0 216 2 3 1265 647 200 53 23 chr1 89175869 89176002 -108019430 + B1_Mur2 SINE Alu 3 139 -10 3 1265 2125 149 15 3 chr1 89176002 89176345 -108019087 - ORR1B2 LTR MaLR -8 359 13 3 1265 372 118 14 26 chr1 89176342 89176455 -108018977 - B2_Mm2 SINE B2 -1 194 47 3 1265 1254 92 40 0 chr1 89176511 89176684 -108018748 - B2_Mm1t SINE B2 -12 181 2 3 1265 528 121 12 0 chr1 89176834 89176917 -108018515 - URR1B DNA MER1_type 0 225 142 3 1265 854 246 10 45 chr1 89177555 89177755 -108017677 + B3 SINE B2 1 193 -23 3 1265 504 256 100 8 chr1 89177786 89177916 -108017516 + RSINE1 SINE B4 2 143 -22 3 1265 286 307 108 10 chr1 89177965 89178067 -108017365 + PB1D7 SINE Alu 8 119 -1 3 1265 243 0 0 0 chr1 89178306 89178333 -108017099 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1265 428 288 34 8 chr1 89178918 89179037 -108016395 - ID_B1 SINE B4 -8 216 95 3 1265 563 253 80 11 chr1 89179097 89179285 -108016147 + B3 SINE B2 2 202 -14 4 1265 24 32 0 0 chr1 89179285 89179316 -108016116 + AT_rich Low_complexity Low_complexity 1 31 0 4 1265 516 306 71 52 chr1 89179321 89179608 -108015824 + B4 SINE B4 18 291 -1 4 1265 636 276 147 36 chr1 89180923 89181344 -108014088 - L1MB3 LINE L1 -53 6130 5663 4 1265 232 269 24 60 chr1 89181375 89181458 -108013974 + ID4 SINE ID 1 80 -3 4 1265 282 211 18 0 chr1 89181609 89181666 -108013766 - B4 SINE B4 -6 286 229 4 1265 420 235 92 86 chr1 89181685 89181848 -108013584 - RSINE1 SINE B4 0 165 2 4 1265 2901 261 82 40 chr1 89182169 89183174 -108012258 - Lx8 LINE L1 -30 7443 6397 4 1265 383 279 22 52 chr1 89183252 89183388 -108012044 - B3 SINE B2 0 216 85 4 1265 429 236 0 70 chr1 89183442 89183556 -108011876 - PB1D10 SINE Alu -1 116 11 4 1265 318 230 169 0 chr1 89184186 89184275 -108011157 + PB1D7 SINE Alu 6 107 -13 4 1265 213 39 0 0 chr1 89184278 89184304 -108011128 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1265 538 250 93 47 chr1 89184325 89184497 -108010935 + B3A SINE B2 1 180 -18 4 1265 29 0 0 0 chr1 89184518 89184547 -108010885 + AT_rich Low_complexity Low_complexity 1 29 0 4 1265 247 315 35 43 chr1 89184734 89184850 -108010582 - L1M3 LINE L1 -281 5902 5788 4 1265 433 190 0 23 chr1 89185059 89185145 -108010287 - PB1D9 SINE Alu -1 119 36 4 1265 303 320 48 29 chr1 89186320 89186423 -108009009 + ID_B1 SINE B4 81 185 -39 4 1265 245 267 33 16 chr1 89186426 89186487 -108008945 + B1F SINE Alu 8 69 -80 4 1265 248 289 102 70 chr1 89186500 89186686 -108008746 - B3A SINE B2 -3 195 4 4 1265 276 302 91 36 chr1 89187071 89187181 -108008251 - PB1D10 SINE Alu 0 117 2 4 1265 496 207 135 40 chr1 89187195 89187321 -108008111 - B1F1 SINE Alu 0 149 12 4 1265 369 0 0 0 chr1 89187333 89187374 -108008058 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1265 405 0 0 0 chr1 89187374 89187418 -108008014 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1265 1053 173 43 0 chr1 89187466 89187651 -108007781 - B3 SINE B2 -6 210 18 4 1265 563 268 0 38 chr1 89187658 89187790 -108007642 - ID_B1 SINE B4 -19 205 79 4 1265 400 267 129 0 chr1 89187862 89187978 -108007454 - RSINE1 SINE B4 -31 134 4 4 1265 322 292 43 58 chr1 89188343 89188481 -108006951 - L1MEg LINE L1 -4107 1977 1842 4 1265 231 143 15 45 chr1 89188482 89188548 -108006884 + CT-rich Low_complexity Low_complexity 3 66 0 4 1265 363 322 75 17 chr1 89188776 89188896 -108006536 - RSINE1 SINE B4 -35 130 4 4 1265 234 91 0 0 chr1 89189909 89189942 -108005490 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1265 1220 54 0 0 chr1 89189943 89190090 -108005342 - B1_Mus1 SINE Alu 0 148 2 4 1265 21 42 0 40 chr1 89190220 89190248 -108005184 + AT_rich Low_complexity Low_complexity 1 27 0 4 1265 1174 94 43 32 chr1 89190248 89190434 -108004998 - B2_Mm2 SINE B2 -6 189 2 4 1265 21 42 0 40 chr1 89190434 89190455 -108004977 + AT_rich Low_complexity Low_complexity 1 21 0 4 1265 928 213 50 10 chr1 89190461 89190660 -108004772 - B3 SINE B2 -9 207 1 4 1265 502 217 93 25 chr1 89190675 89190793 -108004639 + RSINE1 SINE B4 30 155 -10 4 1265 356 250 140 0 chr1 89190818 89190918 -108004514 - PB1D7 SINE Alu 0 120 7 4 1265 323 348 94 35 chr1 89191078 89191364 -108004068 + L1M5 LINE L1 4884 5186 -960 4 1265 233 253 98 69 chr1 89191381 89191483 -108003949 + PB1D10 SINE Alu 12 116 -1 4 1265 360 310 88 14 chr1 89191467 89191486 -108003946 + B4 SINE B4 67 96 -196 4 1265 701 176 103 0 chr1 89191486 89191622 -108003810 + B1_Mur4 SINE Alu 1 150 0 4 1265 648 268 7 0 chr1 89191630 89191783 -108003649 + RSINE1 SINE B4 1 154 -11 4 1265 578 219 74 142 chr1 89191971 89192063 -108003369 + RSINE1 SINE B4 2 103 -62 4 1265 1228 48 0 0 chr1 89192063 89192210 -108003222 + B1_Mus2 SINE Alu 1 147 0 4 1265 578 219 74 142 chr1 89192210 89192293 -108003139 + RSINE1 SINE B4 104 165 0 4 1265 300 158 0 38 chr1 89192293 89192372 -108003060 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1265 331 250 0 36 chr1 89192392 89192475 -108002957 + B4A SINE B4 77 156 -136 4 1265 413 247 0 24 chr1 89192415 89192498 -108002934 + B1_Mur2 SINE Alu 13 93 -56 4 1265 36 40 0 0 chr1 89192521 89192571 -108002861 + AT_rich Low_complexity Low_complexity 1 50 0 4 1265 1167 122 117 5 chr1 89192604 89192801 -108002631 + URR1A DNA MER1_type 1 219 -7 4 1265 358 263 55 94 chr1 89192825 89193082 -108002350 + B4 SINE B4 52 275 -17 4 1265 195 42 0 0 chr1 89193106 89193130 -108002302 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 4 1265 581 226 65 36 chr1 89193130 89193166 -108002266 + B1_Mur1 SINE Alu 7 41 -108 4 1265 185 0 0 39 chr1 89193166 89193192 -108002240 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 4 1265 581 226 65 36 chr1 89193192 89193293 -108002139 + B1_Mur1 SINE Alu 42 147 -2 4 1265 215 284 239 43 chr1 89193316 89193408 -108002024 - ID_B1 SINE B4 -113 111 2 4 1265 277 319 0 0 chr1 89193490 89193562 -108001870 - ID SINE ID -142 82 11 4 1265 738 219 52 42 chr1 89193634 89193825 -108001607 + B3A SINE B2 3 195 -3 4 1265 213 209 0 0 chr1 89193847 89193914 -108001518 + T-rich Low_complexity Low_complexity 1 67 0 4 1265 969 90 0 20 chr1 89193914 89194062 -108001370 - B1_Mur4 SINE Alu 0 150 6 4 1265 254 92 343 86 chr1 89194664 89194769 -108000663 - B2_Mm2 SINE B2 -2 193 62 4 1265 756 93 273 0 chr1 89194846 89194985 -108000447 - B2_Mm1a SINE B2 -14 179 3 4 1265 581 211 9 0 chr1 89195029 89195138 -108000294 + B3A SINE B2 38 147 -51 4 1265 439 227 103 93 chr1 89195085 89195140 -108000292 + MT2B LTR ERVL 69 132 -469 4 1265 267 31 0 0 chr1 89195140 89195172 -108000260 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1265 439 227 103 93 chr1 89195172 89195310 -108000122 + MT2B LTR ERVL 133 264 -337 4 1265 1006 59 52 0 chr1 89195210 89195345 -108000087 + B1_Mus2 SINE Alu 6 147 0 4 1265 26 50 0 0 chr1 89195345 89195385 -108000047 + AT_rich Low_complexity Low_complexity 1 40 0 4 1265 190 200 67 0 chr1 89195725 89195770 -107999662 + MIRb SINE MIR 184 231 -37 4 1265 323 270 153 0 chr1 89197021 89197132 -107998300 + L2c LINE L2 3258 3385 -2 4 1265 361 0 20 20 chr1 89197854 89197904 -107997528 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1265 587 211 33 99 chr1 89198461 89198672 -107996760 - B3A SINE B2 0 198 2 4 1265 391 227 0 0 chr1 89198675 89198741 -107996691 - RSINE1 SINE B4 -66 99 34 4 1265 207 0 0 0 chr1 89198902 89198925 -107996507 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1265 372 22 0 0 chr1 89199285 89199330 -107996102 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1265 234 0 0 0 chr1 89199330 89199355 -107996077 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1265 318 287 48 19 chr1 89199356 89199459 -107995973 - PB1D10 SINE Alu -10 107 2 4 1265 378 257 8 118 chr1 89199537 89199656 -107995776 + ID_B1 SINE B4 103 208 -16 4 1265 270 0 0 0 chr1 89199666 89199696 -107995736 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 4 1265 230 131 0 30 chr1 89199708 89199761 -107995671 - B2_Mm2 SINE B2 -107 109 60 4 1265 1468 75 5 0 chr1 89199761 89199949 -107995483 - B2_Mm1a SINE B2 -4 189 1 4 1265 1152 86 56 0 chr1 89200009 89200171 -107995261 - B2_Mm1t SINE B2 -22 171 1 4 1265 1187 205 0 9 chr1 89200357 89200569 -107994863 + B3 SINE B2 2 211 -5 4 1265 406 59 29 29 chr1 89200621 89200677 -107994755 + (GAAA)n Simple_repeat Simple_repeat 4 61 0 4 1265 738 0 0 0 chr1 89200677 89200759 -107994673 + (CAAAG)n Simple_repeat Simple_repeat 2 83 0 4 1265 406 59 29 29 chr1 89200759 89200772 -107994660 + (GAAA)n Simple_repeat Simple_repeat 2 13 0 4 1265 531 298 0 0 chr1 89200796 89200920 -107994512 + B1F1 SINE Alu 2 125 -24 4 1265 421 295 140 68 chr1 89201103 89201310 -107994122 + B4 SINE B4 68 289 -3 4 1265 183 129 0 0 chr1 89201358 89201389 -107994043 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1265 388 316 113 29 chr1 89201416 89201654 -107993778 - MER63D DNA AcHobo -486 575 318 4 1265 770 238 94 16 chr1 89202079 89202271 -107993161 - B3 SINE B2 -4 212 6 4 1265 458 230 267 53 chr1 89202515 89202740 -107992692 + B4 SINE B4 2 274 -18 4 1265 331 275 14 0 chr1 89202889 89202958 -107992474 - PB1D10 SINE Alu -7 110 41 4 1265 305 306 211 39 chr1 89202958 89203069 -107992363 - ID_B1 SINE B4 -7 217 7 4 1265 279 202 178 37 chr1 89203250 89203366 -107992066 + PB1D10 SINE Alu 21 135 -13 4 1265 270 0 0 0 chr1 89203408 89203438 -107991994 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1265 419 320 40 0 chr1 89203439 89203564 -107991868 + ID_B1 SINE B4 73 202 -22 4 1265 213 171 0 28 chr1 89203533 89203569 -107991863 + PB1D7 SINE Alu 65 99 -21 4 1265 743 238 56 60 chr1 89204124 89204201 -107991231 - ID_B1 SINE B4 -4 220 149 4 1265 1714 139 216 6 chr1 89204201 89204563 -107990869 - BGLII_B LTR ERVK -1 440 3 4 1265 743 238 56 60 chr1 89204563 89204700 -107990732 - ID_B1 SINE B4 -76 148 7 4 1265 318 257 35 122 chr1 89204882 89204997 -107990435 + B3A SINE B2 1 105 -90 4 1265 1162 125 16 26 chr1 89205007 89205196 -107990236 + B2_Mm2 SINE B2 2 188 -7 4 1265 1370 271 166 12 chr1 89205303 89205870 -107989562 - Lx8 LINE L1 0 7473 6820 4 1265 544 262 118 16 chr1 89207574 89207760 -107987672 + ID_B1 SINE B4 4 208 -16 5 1265 280 43 43 0 chr1 89207761 89207807 -107987625 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1265 1251 41 0 0 chr1 89207807 89207954 -107987478 - B1_Mm SINE Alu 0 147 1 5 1265 291 269 105 52 chr1 89207984 89208137 -107987295 + L1MC2 LINE L1 6158 6318 -26 5 1265 591 248 16 8 chr1 89208152 89208274 -107987158 + RSINE1 SINE B4 4 126 -39 5 1265 261 0 0 0 chr1 89208319 89208348 -107987084 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1265 453 272 26 26 chr1 89208349 89208466 -107986966 + RSINE1 SINE B4 1 117 -48 5 1265 1206 41 7 0 chr1 89208491 89208636 -107986796 - B1_Mm SINE Alu -1 146 1 5 1265 925 204 275 11 chr1 89208652 89208925 -107986507 + MTD LTR MaLR 67 411 -8 5 1265 1136 48 0 46 chr1 89208930 89209083 -107986349 + B1_Mus1 SINE Alu 1 146 -2 5 1265 207 100 0 0 chr1 89209086 89209116 -107986316 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 5 1265 231 203 29 14 chr1 89209216 89209286 -107986146 + A-rich Low_complexity Low_complexity 6 76 0 5 1265 1391 206 21 14 chr1 89209369 89209660 -107985772 + RLTR11A2 LTR ERVK 208 500 -27 5 1265 191 335 138 21 chr1 89209941 89210130 -107985302 + L2c LINE L2 2920 3130 -257 5 1265 213 65 0 0 chr1 89210288 89210319 -107985113 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 5 1265 261 109 0 0 chr1 89210329 89210375 -107985057 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1265 444 236 60 12 chr1 89210377 89210502 -107984930 - RSINE1 SINE B4 -31 134 2 5 1265 482 191 0 43 chr1 89210926 89211019 -107984413 - ID_B1 SINE B4 -7 217 129 5 1265 823 70 2 2 chr1 89211001 89211121 -107984311 - B1_Mus1 SINE Alu 0 120 1 5 1265 496 230 62 16 chr1 89211007 89211135 -107984297 - B4 SINE B4 -89 203 70 5 1265 1566 200 38 15 chr1 89211162 89211502 -107983930 + RLTR11A2 LTR ERVK 180 527 0 5 1265 899 286 5 5 chr1 89211557 89211764 -107983668 + ID_B1 SINE B4 6 212 -12 5 1265 333 0 0 0 chr1 89211764 89211801 -107983631 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1265 313 312 37 34 chr1 89211872 89211976 -107983456 - PB1D10 SINE Alu -2 118 13 5 1265 21 57 0 0 chr1 89211998 89212033 -107983399 + AT_rich Low_complexity Low_complexity 1 35 0 5 1265 601 187 9 0 chr1 89212035 89212142 -107983290 - B1_Mur2 SINE Alu 0 149 42 5 1265 767 243 5 80 chr1 89212150 89212351 -107983081 - B3A SINE B2 -1 197 12 5 1265 1274 300 15 3 chr1 89212406 89212734 -107982698 - MLT1F LTR MaLR 0 548 217 5 1265 24 32 0 0 chr1 89212852 89212883 -107982549 + AT_rich Low_complexity Low_complexity 1 31 0 5 1265 1224 48 7 0 chr1 89212889 89213035 -107982397 - B1_Mus2 SINE Alu 0 147 1 5 1265 303 336 90 25 chr1 89213070 89213192 -107982240 - MLT1F LTR MaLR -336 212 83 5 1265 502 219 26 9 chr1 89213717 89213832 -107981600 - PB1D10 SINE Alu 0 117 1 5 1265 320 192 37 49 chr1 89213956 89214038 -107981394 - Lx8 LINE L1 -2 7471 7391 5 1265 230 0 33 0 chr1 89214284 89214314 -107981118 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1265 1118 79 0 0 chr1 89214314 89214453 -107980979 - B1_Mus1 SINE Alu -8 140 2 5 1265 1211 102 6 11 chr1 89214487 89214639 -107980793 + B2_Mm1a SINE B2 6 158 -35 5 1265 189 0 0 0 chr1 89214639 89214660 -107980772 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 1265 1211 102 6 11 chr1 89214660 89214686 -107980746 + B2_Mm1a SINE B2 159 183 -10 5 1265 596 299 6 24 chr1 89214729 89214897 -107980535 - ID_B1 SINE B4 0 224 60 5 1265 224 309 36 0 chr1 89214939 89214994 -107980438 + RSINE1 SINE B4 89 145 -20 5 1265 276 259 0 0 chr1 89215095 89215153 -107980279 - MTC LTR MaLR -360 61 4 5 1265 2450 178 146 8 chr1 89215179 89215672 -107979760 - RMER15 LTR ERVL -14 561 1 5 1265 704 207 122 14 chr1 89215728 89215875 -107979557 + RSINE1 SINE B4 3 165 0 5 1265 1014 72 72 0 chr1 89215906 89216044 -107979388 - B1_Mus1 SINE Alu 0 148 1 5 1265 385 297 70 0 chr1 89216086 89216214 -107979218 + B1F SINE Alu 3 139 -10 5 1265 890 296 63 63 chr1 89216252 89216631 -107978801 - MTE2b LTR MaLR 0 379 1 5 1265 252 0 0 0 chr1 89217382 89217410 -107978022 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1265 1242 54 0 0 chr1 89217410 89217557 -107977875 - B1_Mus2 SINE Alu 0 147 1 5 1265 2184 142 20 8 chr1 89217612 89217966 -107977466 - ORR1B2 LTR MaLR -4 363 6 5 1265 1149 133 33 0 chr1 89218452 89218633 -107976799 - B2_Mm2 SINE B2 -7 188 2 5 1265 398 210 12 0 chr1 89218660 89218741 -107976691 + ORR1D1 LTR MaLR 1 82 -292 5 1265 918 240 123 145 chr1 89218741 89219286 -107976146 - MT2A LTR ERVL 0 533 1 5 1265 559 136 11 0 chr1 89219286 89219374 -107976058 + ORR1D1 LTR MaLR 78 166 -208 5 1265 2063 164 66 70 chr1 89219381 89219771 -107975661 - RMER6A LTR ERVK 0 756 349 5 1265 1095 74 0 0 chr1 89219771 89219906 -107975526 + B1_Mus2 SINE Alu 1 135 -12 5 1265 323 0 48 0 chr1 89219907 89219949 -107975483 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1265 2063 146 86 50 chr1 89219949 89220344 -107975088 - RMER6A LTR ERVK -319 437 57 5 1265 710 178 132 103 chr1 89220349 89220562 -107974870 + ORR1D1 LTR MaLR 156 374 0 5 1265 690 242 97 0 chr1 89220571 89220757 -107974675 - MLT1C LTR MaLR -89 378 175 5 1265 237 256 28 159 chr1 89220756 89220768 -107974664 - MT2B2 LTR ERVL -310 274 182 5 1265 471 239 0 32 chr1 89220768 89220863 -107974569 - PB1D10 SINE Alu -8 109 18 5 1265 650 264 26 21 chr1 89220853 89221043 -107974389 - MLT1C LTR MaLR -197 193 3 5 1265 1066 284 66 16 chr1 89221049 89221353 -107974079 - MLT1G3 LTR MaLR 0 595 277 5 1265 894 298 19 23 chr1 89221380 89221638 -107973794 + MTD LTR MaLR 18 274 -145 5 1265 667 236 14 14 chr1 89221652 89221798 -107973634 + B1_Mus1 SINE Alu 1 146 -2 5 1265 909 271 98 65 chr1 89221979 89222346 -107973086 - MTE2b LTR MaLR 0 379 1 5 1265 321 169 0 0 chr1 89222448 89222507 -107972925 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 1265 303 218 12 37 chr1 89222733 89222814 -107972618 + MER53 DNA hAT 7 85 -108 5 1265 1064 90 28 0 chr1 89222922 89223066 -107972366 - B1_Mus1 SINE Alu 0 148 1 5 1265 31 0 0 0 chr1 89223543 89223574 -107971858 + GC_rich Low_complexity Low_complexity 1 31 0 5 1265 289 306 49 16 chr1 89225198 89225321 -107970111 - Tigger5 DNA MER2_type 0 2406 2280 5 1265 596 332 28 52 chr1 89225304 89225552 -107969880 - Tigger5 DNA MER2_type -2164 242 1 5 1265 1130 84 0 0 chr1 89225924 89226067 -107969365 - B1_Mus2 SINE Alu -4 143 1 5 1265 218 271 17 17 chr1 89226082 89226142 -107969290 - PB1D10 SINE Alu -30 87 28 5 1265 520 197 205 0 chr1 89226352 89226474 -107968958 - B1_Mus1 SINE Alu 0 148 2 5 1265 320 257 14 0 chr1 89226574 89226648 -107968784 + ID4 SINE ID 2 76 -7 5 1265 744 173 90 0 chr1 89227631 89227764 -107967668 - B1_Mus1 SINE Alu -2 146 2 5 1265 339 235 35 121 chr1 89227665 89227768 -107967664 - MT2B LTR ERVL -344 257 164 5 1265 508 226 0 0 chr1 89227768 89227861 -107967571 - 4.5SRNA scRNA scRNA -1 93 1 5 1265 339 235 35 121 chr1 89227861 89227873 -107967559 - MT2B LTR ERVL -438 163 152 5 1265 631 294 6 6 chr1 89227983 89228147 -107967285 - RSINE1 SINE B4 0 165 2 5 1265 489 76 0 0 chr1 89228252 89228318 -107967114 + (TCC)n Simple_repeat Simple_repeat 3 68 0 5 1265 479 282 17 8 chr1 89228347 89228465 -107966967 - RSINE1 SINE B4 -36 129 11 5 1265 411 287 120 21 chr1 89228494 89228686 -107966746 - ID_B1 SINE B4 -11 213 3 5 1265 321 25 0 0 chr1 89228706 89228728 -107966704 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 1265 393 75 0 0 chr1 89228728 89228781 -107966651 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1265 321 25 0 0 chr1 89228781 89228798 -107966634 + (TA)n Simple_repeat Simple_repeat 2 18 0 5 1265 1292 20 0 0 chr1 89228890 89229037 -107966395 - B1_Mm SINE Alu 0 147 1 5 1265 611 184 31 16 chr1 89229100 89229227 -107966205 + ID_B1 SINE B4 96 224 0 5 1265 403 248 83 33 chr1 89229390 89229524 -107965908 + B2_Mm2 SINE B2 1 141 -75 5 1265 764 178 186 43 chr1 89229727 89229915 -107965517 - B3 SINE B2 0 216 2 5 1265 437 240 9 19 chr1 89229915 89230021 -107965411 - PB1D10 SINE Alu -9 108 4 5 1265 469 214 75 28 chr1 89230144 89230250 -107965182 + PB1D9 SINE Alu 3 113 -7 5 1265 607 276 0 24 chr1 89231884 89232051 -107963381 - RSINE1 SINE B4 -1 164 2 5 1265 228 213 0 0 chr1 89232289 89232336 -107963096 + C-rich Low_complexity Low_complexity 1 47 0 5 1265 222 295 0 32 chr1 89232463 89232526 -107962906 - ID SINE ID -141 83 23 5 1265 377 131 334 9 chr1 89232533 89232639 -107962793 - B2_Mm2 SINE B2 -8 187 47 5 1265 1316 80 11 0 chr1 89232654 89232829 -107962603 - B2_Mm1t SINE B2 -16 177 1 5 1265 231 299 56 42 chr1 89232877 89232901 -107962531 + YREP_Mm Unknown Unknown 152 176 -1636 5 1265 296 266 120 60 chr1 89232901 89233001 -107962431 - PB1D10 SINE Alu -11 106 1 5 1265 231 299 56 42 chr1 89233001 89233119 -107962313 + YREP_Mm Unknown Unknown 177 296 -1516 5 1265 558 244 65 0 chr1 89233007 89233130 -107962302 - ID_B1 SINE B4 -3 221 91 5 1265 340 216 160 72 chr1 89233172 89233297 -107962135 - B1F2 SINE Alu 0 149 14 5 1265 724 219 0 20 chr1 89233383 89233532 -107961900 + B1_Mus2 SINE Alu 1 146 -1 5 1265 303 291 193 7 chr1 89233583 89233718 -107961714 - RSINE1 SINE B4 -3 162 3 5 1265 1120 48 0 87 chr1 89233781 89233942 -107961490 - B1_Mm SINE Alu 0 147 1 5 1265 431 308 51 13 chr1 89234054 89234282 -107961150 - B4A SINE B4 -4 288 2 5 1265 489 200 226 0 chr1 89234584 89234699 -107960733 - B1F2 SINE Alu -8 141 1 5 1265 1430 55 11 0 chr1 89234712 89234895 -107960537 - B2_Mm1t SINE B2 -7 186 2 5 1265 2151 210 33 7 chr1 89235489 89235930 -107959502 - MT2A LTR ERVL -66 489 26 6 1265 723 265 0 40 chr1 89235940 89236117 -107959315 - B3 SINE B2 -42 174 5 6 1265 652 192 157 19 chr1 89236180 89236339 -107959093 - B3 SINE B2 -33 183 3 6 1265 609 266 35 0 chr1 89236449 89236592 -107958840 - B1F2 SINE Alu -1 148 1 6 1265 336 64 0 0 chr1 89236844 89236891 -107958541 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1265 243 275 143 0 chr1 89236982 89237100 -107958332 - MLT1A1 LTR MaLR -223 142 1 6 1265 230 214 0 0 chr1 89237627 89237669 -107957763 - ID_B1 SINE B4 -8 216 175 6 1265 1155 62 7 0 chr1 89237718 89237864 -107957568 - B1_Mus2 SINE Alu 0 147 1 6 1265 844 84 0 0 chr1 89238029 89238136 -107957296 - U6 snRNA snRNA 0 107 1 6 1265 502 308 68 15 chr1 89238136 89238258 -107957174 - ID_B1 SINE B4 -90 134 5 6 1265 228 244 0 0 chr1 89238340 89238381 -107957051 - tRNA-Ala-GCY_ tRNA tRNA -9 66 26 6 1265 248 261 183 28 chr1 89238464 89238606 -107956826 + MER3 DNA MER1_type 1 164 -45 6 1265 335 303 45 0 chr1 89238607 89238696 -107956736 - B1F SINE Alu -30 119 27 6 1265 1501 63 5 0 chr1 89238899 89239088 -107956344 - B2_Mm1t SINE B2 -3 190 1 6 1265 378 238 165 12 chr1 89239302 89239472 -107955960 - L1MC3 LINE L1 -245 7540 7345 6 1265 529 191 73 34 chr1 89239489 89239616 -107955816 + B1_Mur1 SINE Alu 18 144 -5 6 1265 358 301 0 0 chr1 89239790 89239863 -107955569 + RSINE1 SINE B4 3 75 -90 6 1265 1211 77 6 34 chr1 89240279 89240454 -107954978 + B2_Mm1t SINE B2 2 171 -22 6 1265 340 158 13 0 chr1 89240489 89240553 -107954879 + B2_Mm2 SINE B2 46 115 -83 6 1265 23 0 0 0 chr1 89240553 89240576 -107954856 + AT_rich Low_complexity Low_complexity 1 23 0 6 1265 319 241 34 57 chr1 89240953 89241041 -107954391 - PB1D10 SINE Alu -1 116 31 6 1265 347 108 164 5 chr1 89241179 89241264 -107954168 + B1_Mus1 SINE Alu 1 117 0 6 1265 722 166 32 30 chr1 89241351 89241525 -107953907 - B3 SINE B2 -4 191 17 6 1265 996 207 53 24 chr1 89241906 89242114 -107953318 - B3 SINE B2 -2 214 1 6 1265 210 232 107 0 chr1 89242457 89242513 -107952919 - ID4_ SINE ID -1 82 21 6 1265 617 302 81 50 chr1 89242625 89242883 -107952549 - B4A SINE B4 -26 266 1 6 1265 186 43 0 0 chr1 89243093 89243116 -107952316 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1265 396 327 46 109 chr1 89243122 89243198 -107952234 - RSINE1 SINE B4 0 165 99 6 1265 185 0 40 0 chr1 89243198 89243223 -107952209 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1265 1189 43 0 0 chr1 89243223 89243363 -107952069 - B1_Mus2 SINE Alu -7 140 1 6 1265 396 327 46 109 chr1 89243363 89243460 -107951972 - RSINE1 SINE B4 -67 98 3 6 1265 948 265 28 5 chr1 89243493 89243705 -107951727 - B4 SINE B4 -67 225 9 6 1265 303 317 38 19 chr1 89243966 89244072 -107951360 + PB1D10 SINE Alu 2 109 -8 6 1265 517 162 0 0 chr1 89244239 89244319 -107951113 + B3A SINE B2 1 80 -118 6 1265 745 251 39 11 chr1 89244445 89244626 -107950806 - ID_B1 SINE B4 -4 220 35 6 1265 327 258 80 171 chr1 89244957 89245144 -107950288 - ID_B1 SINE B4 -6 218 49 6 1265 621 268 21 0 chr1 89245046 89245188 -107950244 - B3A SINE B2 -50 148 4 6 1265 23 0 0 0 chr1 89245560 89245583 -107949849 + AT_rich Low_complexity Low_complexity 1 23 0 6 1265 649 124 139 58 chr1 89245883 89246020 -107949412 - B1_Mur3 SINE Alu -1 148 1 6 1265 347 221 38 25 chr1 89246221 89246300 -107949132 + B1_Mus2 SINE Alu 68 147 0 6 1265 459 239 12 134 chr1 89247123 89247287 -107948145 + MT2B LTR ERVL 135 278 -323 6 1265 712 167 23 16 chr1 89247170 89247298 -107948134 + B1_Mus1 SINE Alu 18 146 -2 6 1265 347 329 132 45 chr1 89247300 89247520 -107947912 + B4A SINE B4 53 291 -1 6 1265 963 304 48 12 chr1 89247660 89247910 -107947522 + B4A SINE B4 20 278 -14 6 1265 402 184 65 13 chr1 89248000 89248077 -107947355 - PB1D7 SINE Alu -22 98 18 6 1265 306 286 0 0 chr1 89248273 89248343 -107947089 - B4A SINE B4 -2 290 221 6 1265 431 205 36 0 chr1 89248385 89248468 -107946964 - B4A SINE B4 -77 215 130 6 1265 1031 236 112 17 chr1 89248470 89248984 -107946448 - Lx8 LINE L1 -690 6783 6189 6 1265 1369 57 40 0 chr1 89248993 89249169 -107946263 + B2_Mm2 SINE B2 2 184 -11 6 1265 213 294 29 0 chr1 89249169 89249230 -107946202 + GA-rich Low_complexity Low_complexity 9 71 0 6 1265 588 201 180 18 chr1 89249314 89249481 -107945951 - B2_Mm2 SINE B2 0 195 2 6 1265 744 176 14 14 chr1 89249574 89249718 -107945714 - B1_Mus1 SINE Alu 0 148 5 6 1265 1415 80 37 0 chr1 89249745 89249932 -107945500 - B2_Mm2 SINE B2 0 195 2 6 1265 183 42 0 0 chr1 89249932 89249956 -107945476 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1265 304 254 0 0 chr1 89249967 89250022 -107945410 - ID4_ SINE ID -14 69 15 6 1265 46 45 0 0 chr1 89250455 89250522 -107944910 + AT_rich Low_complexity Low_complexity 1 67 0 6 1265 301 211 56 0 chr1 89250531 89250602 -107944830 + ID4_ SINE ID 3 77 -6 6 1265 25 51 0 0 chr1 89252020 89252059 -107943373 + AT_rich Low_complexity Low_complexity 1 39 0 6 1265 350 282 73 17 chr1 89252072 89252249 -107943183 - L1ME4a LINE L1 -48 6076 5890 6 1265 339 297 86 25 chr1 89252282 89252444 -107942988 - L1ME4a LINE L1 -298 5826 5655 6 1265 329 288 123 13 chr1 89252761 89252916 -107942516 + MER58A DNA MER1_type 49 220 -4 6 1265 1284 95 11 5 chr1 89253540 89253731 -107941701 - B2_Mm1t SINE B2 0 193 2 6 1265 402 263 183 64 chr1 89254057 89254276 -107941156 + L2b LINE L2 3182 3426 0 6 1265 353 340 71 48 chr1 89254278 89254488 -107940944 - L1MC LINE L1 -2128 5754 5540 6 1265 651 105 95 0 chr1 89254522 89254627 -107940805 - B1_Mur4 SINE Alu -2 148 34 6 1265 22 35 0 0 chr1 89256617 89256646 -107938786 + AT_rich Low_complexity Low_complexity 1 29 0 6 1265 191 105 0 50 chr1 89256784 89256824 -107938608 + CT-rich Low_complexity Low_complexity 4 41 0 6 1265 216 0 0 0 chr1 89256828 89256852 -107938580 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1265 806 0 11 0 chr1 89257142 89257236 -107938196 + (TTCTC)n Simple_repeat Simple_repeat 1 95 0 6 1265 239 114 0 22 chr1 89257239 89257284 -107938148 + (CCCCCT)n Simple_repeat Simple_repeat 3 46 0 6 1265 600 53 0 0 chr1 89257289 89257365 -107938067 + (TCCCC)n Simple_repeat Simple_repeat 4 79 0 6 1265 513 267 116 96 chr1 89257380 89257579 -107937853 - B4A SINE B4 -86 206 4 6 1265 207 0 0 0 chr1 89257595 89257618 -107937814 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1265 1125 72 0 0 chr1 89257618 89257756 -107937676 - B1_Mus2 SINE Alu -7 140 3 6 1265 313 241 83 40 chr1 89257938 89258106 -107937326 + L1MC5 LINE L1 6743 6997 -1045 6 1265 227 282 42 62 chr1 89258227 89258420 -107937012 + L1MC5 LINE L1 7089 7277 -684 6 1265 334 317 84 11 chr1 89258528 89258719 -107936713 + L1MC5 LINE L1 7719 7923 -38 6 1265 455 184 237 0 chr1 89259100 89259214 -107936218 - B1_Mus1 SINE Alu -5 143 3 6 1265 467 264 88 27 chr1 89259374 89259522 -107935910 + ID_B1 SINE B4 64 220 -4 6 158 680 217 32 3 chr1 89259895 89260037 -107935395 - B3A SINE B2 -33 162 2 6 1266 576 106 0 0 chr1 89260108 89260193 -107935239 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1266 310 314 49 35 chr1 89260193 89260325 -107935107 - RSINE1 SINE B4 -12 153 20 6 1266 388 254 92 8 chr1 89261477 89261608 -107933824 - B1_Mur1 SINE Alu -7 142 1 6 1266 896 198 93 6 chr1 89262051 89262234 -107933198 - B3 SINE B2 -14 202 4 6 1266 1124 75 0 0 chr1 89262275 89262422 -107933010 + B1_Mm SINE Alu 1 147 0 6 1266 235 239 29 137 chr1 89262810 89262912 -107932520 - PB1D10 SINE Alu -3 114 24 6 1266 669 302 18 0 chr1 89262822 89262991 -107932441 - ID_B1 SINE B4 -27 197 26 6 1266 270 310 110 44 chr1 89263073 89263164 -107932268 - B1F1 SINE Alu -43 106 10 6 1266 480 275 106 21 chr1 89263814 89263955 -107931477 - B3A SINE B2 -45 153 1 6 1266 352 234 36 25 chr1 89263955 89264049 -107931383 - B4 SINE B4 -197 95 1 6 1266 4315 87 10 0 chr1 89264077 89264655 -107930777 - MT2B2 LTR ERVL 0 584 1 6 1266 220 208 61 20 chr1 89264883 89264932 -107930500 - ID4_ SINE ID -11 72 22 6 1266 387 0 0 0 chr1 89265137 89265180 -107930252 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1266 1057 257 28 3 chr1 89265207 89265527 -107929905 - L1_Mur3 LINE L1 -1863 4017 3690 6 1266 303 351 45 22 chr1 89265628 89265762 -107929670 + B4A SINE B4 66 202 -90 6 1266 195 139 0 0 chr1 89266089 89266125 -107929307 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1266 229 346 13 0 chr1 89266223 89266301 -107929131 + (TATG)n Simple_repeat Simple_repeat 1 79 0 6 1266 21 0 0 0 chr1 89266452 89266473 -107928959 + AT_rich Low_complexity Low_complexity 1 21 0 6 1266 194 0 39 0 chr1 89266519 89266545 -107928887 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 1266 333 0 0 0 chr1 89266641 89266678 -107928754 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1266 222 369 146 0 chr1 89266679 89266782 -107928650 - PB1 SINE Alu -9 118 1 6 1266 912 72 64 21 chr1 89266901 89267042 -107928390 - B1_Mus2 SINE Alu 0 147 1 6 1266 765 176 44 21 chr1 89267280 89267470 -107927962 + B3 SINE B2 1 191 -4 6 1266 648 162 12 139 chr1 89267781 89267946 -107927486 - B1_Mur3 SINE Alu -5 144 1 6 1266 705 227 112 16 chr1 89268464 89268652 -107926780 - B3 SINE B2 -10 206 1 6 1266 248 188 27 68 chr1 89269125 89269199 -107926233 - ID4_ SINE ID -10 73 3 6 1266 229 287 135 30 chr1 89269206 89269339 -107926093 - B1F SINE Alu 0 149 3 7 1266 195 184 0 0 chr1 89269762 89269800 -107925632 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1266 387 234 3 17 chr1 89270266 89270362 -107925070 + B1_Mur2 SINE Alu 44 135 -14 7 1266 243 0 0 0 chr1 89270538 89270565 -107924867 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 7 1266 1347 92 16 0 chr1 89271343 89271528 -107923904 - B2_Mm2 SINE B2 -7 188 1 7 1266 493 290 0 24 chr1 89271928 89272055 -107923377 + ID_B1 SINE B4 84 207 -17 7 1266 272 336 42 35 chr1 89272055 89272070 -107923362 + B1_Mus2 SINE Alu 3 145 -2 7 1266 629 125 18 46 chr1 89272975 89273084 -107922348 - B1_Mus1 SINE Alu -17 131 26 7 1266 314 244 160 109 chr1 89273089 89273264 -107922168 - B2_Mm2 SINE B2 -9 186 3 7 1266 24 0 0 0 chr1 89273562 89273586 -107921846 + AT_rich Low_complexity Low_complexity 1 24 0 7 1266 259 329 0 12 chr1 89273714 89273797 -107921635 + ID4 SINE ID 2 83 0 7 1266 371 252 68 0 chr1 89274782 89274885 -107920547 - PB1D10 SINE Alu -7 110 1 7 1266 296 258 128 11 chr1 89275739 89275833 -107919599 + PB1 SINE Alu 21 125 -2 7 1266 415 287 3 5 chr1 89275933 89276032 -107919400 + PB1D10 SINE Alu 5 98 -19 7 1266 286 265 160 127 chr1 89276986 89277146 -107918286 - RSINE1 SINE B4 -8 157 4 7 1266 660 253 11 43 chr1 89277716 89277922 -107917510 - B3A SINE B2 -10 206 6 7 1266 205 241 85 17 chr1 89278078 89278137 -107917295 - L2b LINE L2 0 3375 3313 7 1266 557 218 111 41 chr1 89278478 89278650 -107916782 - B3A SINE B2 -11 187 4 7 1266 1345 64 40 6 chr1 89278707 89278880 -107916552 - B2_Mm2 SINE B2 -14 181 3 7 1266 972 162 0 0 chr1 89279173 89279321 -107916111 - B1_Mur4 SINE Alu -2 148 1 7 1266 275 305 12 24 chr1 89279551 89279635 -107915797 + B1_Mur3 SINE Alu 6 88 -61 7 1266 569 310 70 47 chr1 89279683 89279896 -107915536 - B4A SINE B4 -74 218 1 7 1266 402 74 0 0 chr1 89279936 89279990 -107915442 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 7 1266 1097 181 32 60 chr1 89280848 89281066 -107914366 - B3 SINE B2 -4 212 1 7 1266 261 250 87 14 chr1 89281869 89281938 -107913494 - MIR3 SINE MIR -11 197 124 7 1266 192 77 0 0 chr1 89282830 89282856 -107912576 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1266 691 244 156 11 chr1 89284193 89284379 -107911053 - B3 SINE B2 -3 213 1 7 1266 320 267 56 19 chr1 89284519 89284626 -107910806 - Charlie4a DNA MER1_type -373 135 25 7 1266 187 320 0 0 chr1 89284649 89284699 -107910733 - MIRc SINE MIR -147 121 72 7 1266 641 206 72 7 chr1 89284988 89285163 -107910269 + B3 SINE B2 1 176 -19 7 1266 307 210 11 90 chr1 89286436 89286525 -107908907 - ID4_ SINE ID 0 83 2 7 1266 243 79 0 0 chr1 89286608 89286646 -107908786 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 7 1266 340 279 103 52 chr1 89286646 89286801 -107908631 - RSINE1 SINE B4 0 165 3 7 1266 207 0 0 0 chr1 89287006 89287029 -107908403 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1266 255 257 28 28 chr1 89287112 89287184 -107908248 - ID4_ SINE ID -8 75 4 7 1266 283 294 53 32 chr1 89287533 89287628 -107907804 - PB1D10 SINE Alu -20 97 1 7 1266 183 42 0 0 chr1 89288319 89288343 -107907089 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 7 1266 700 91 18 0 chr1 89288425 89288535 -107906897 + (CTTTG)n Simple_repeat Simple_repeat 2 113 0 7 1266 1053 60 15 7 chr1 89288536 89288671 -107906761 - B1_Mus1 SINE Alu -12 136 1 7 1266 370 242 109 36 chr1 89289075 89289212 -107906220 + B1F2 SINE Alu 3 149 0 7 1266 360 300 48 32 chr1 89290085 89290209 -107905223 - ID_B1 SINE B4 -3 221 96 7 1266 225 254 18 0 chr1 89292715 89292770 -107902662 - PB1D10 SINE Alu -41 76 21 7 1266 523 153 161 48 chr1 89294949 89295073 -107900359 + B1_Mus2 SINE Alu 3 140 -7 7 1266 234 350 115 5 chr1 89295574 89295776 -107899656 + MIR3 SINE MIR 6 234 -34 7 1266 1330 82 39 0 chr1 89296052 89296234 -107899198 + B2_Mm1t SINE B2 2 190 -3 7 1266 609 316 0 19 chr1 89296396 89296551 -107898881 + RSINE1 SINE B4 1 152 -13 7 1266 180 0 0 0 chr1 89296788 89296808 -107898624 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1266 224 290 81 0 chr1 89297233 89297295 -107898137 + PB1 SINE Alu 7 73 -54 7 1266 34 24 0 0 chr1 89297301 89297342 -107898090 + AT_rich Low_complexity Low_complexity 1 41 0 7 1266 213 330 21 54 chr1 89297741 89297834 -107897598 + MIRc SINE MIR 42 131 -137 7 1266 312 235 189 38 chr1 89297907 89298013 -107897419 - ID_B1 SINE B4 -17 207 86 7 1266 231 411 43 19 chr1 89298019 89298180 -107897252 - MLT1F2 LTR MaLR -54 506 342 7 1266 487 214 163 23 chr1 89298308 89298437 -107896995 + B1_Mur1 SINE Alu 3 149 0 7 1266 483 60 0 0 chr1 89298727 89298794 -107896638 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1266 695 233 0 15 chr1 89298806 89298937 -107896495 - RSINE1 SINE B4 -29 136 8 7 1266 402 221 252 7 chr1 89299847 89300002 -107895430 - B3A SINE B2 -4 194 2 7 1266 390 368 16 31 chr1 89305177 89305306 -107890126 - RSINE1 SINE B4 -37 128 2 7 1266 184 211 67 50 chr1 89305576 89305636 -107889796 - L2 LINE L2 -911 2508 2448 7 1266 422 229 38 0 chr1 89305760 89305865 -107889567 + PB1D10 SINE Alu 9 117 0 7 1266 690 210 187 32 chr1 89306322 89306509 -107888923 + B3 SINE B2 1 216 0 7 1266 578 244 16 0 chr1 89306530 89306657 -107888775 + B1_Mus1 SINE Alu 1 129 -19 7 1266 1272 277 75 42 chr1 89309143 89309732 -107885700 - L1MD1 LINE L1 -203 6039 5432 7 1266 3609 130 118 26 chr1 89309810 89310213 -107885219 - RMER6A LTR ERVK -7 749 303 7 1266 326 23 23 0 chr1 89310213 89310256 -107885176 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1266 1124 82 62 39 chr1 89310256 89310282 -107885150 - B2_Mm1t SINE B2 -10 183 164 7 1266 261 75 0 0 chr1 89310282 89310322 -107885110 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 1266 1124 82 62 39 chr1 89310322 89310473 -107884959 - B2_Mm1t SINE B2 -30 163 2 7 1266 3609 130 118 26 chr1 89310473 89310754 -107884678 - RMER6A LTR ERVK -454 302 2 7 1266 210 288 61 0 chr1 89310940 89311006 -107884426 - PB1D7 SINE Alu -31 89 20 7 1266 296 295 79 11 chr1 89311118 89311207 -107884225 - PB1 SINE Alu -7 120 26 7 1266 379 322 57 24 chr1 89311323 89311447 -107883985 - RSINE1 SINE B4 -35 130 3 7 1266 180 0 0 0 chr1 89311498 89311518 -107883914 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1266 472 248 55 55 chr1 89311626 89311771 -107883661 - RSINE1 SINE B4 0 165 21 7 1266 446 163 169 34 chr1 89311833 89311922 -107883510 - U6 snRNA snRNA -4 103 3 7 1266 236 188 87 0 chr1 89312141 89312210 -107883222 - L1MD LINE L1 -3246 2900 2826 7 1266 264 30 0 0 chr1 89312210 89312243 -107883189 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1266 423 52 0 0 chr1 89312243 89312301 -107883131 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 7 1266 21 0 0 0 chr1 89312353 89312374 -107883058 + AT_rich Low_complexity Low_complexity 1 21 0 7 1266 763 179 7 65 chr1 89312383 89312538 -107882894 + B1_Mur3 SINE Alu 4 149 0 7 1266 258 116 0 0 chr1 89312538 89312581 -107882851 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1266 738 227 39 29 chr1 89312589 89312793 -107882639 + B3 SINE B2 5 210 -6 7 1266 474 244 161 8 chr1 89313673 89313797 -107881635 - B1F2 SINE Alu -5 144 2 7 1266 233 167 20 20 chr1 89315545 89315594 -107879838 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1266 270 0 0 0 chr1 89316121 89316151 -107879281 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1266 837 42 0 25 chr1 89317309 89317430 -107878002 + (TCTCCC)n Simple_repeat Simple_repeat 6 123 0 7 1266 747 183 42 7 chr1 89317436 89317579 -107877853 - B1_Mur3 SINE Alu -1 148 1 7 1266 304 0 0 0 chr1 89317723 89317758 -107877674 - U2 snRNA snRNA -153 35 1 7 1266 659 216 26 0 chr1 89317815 89317931 -107877501 + B1_Mur1 SINE Alu 31 149 0 7 1266 26 53 0 17 chr1 89318265 89318298 -107877134 + AT_rich Low_complexity Low_complexity 1 33 0 7 1266 1132 88 0 0 chr1 89318298 89318445 -107876987 + B1_Mus2 SINE Alu 1 147 0 7 1266 26 53 0 17 chr1 89318445 89318469 -107876963 + AT_rich Low_complexity Low_complexity 1 24 0 7 1266 479 280 82 22 chr1 89318962 89319097 -107876335 - ID_B1 SINE B4 -1 223 81 7 1266 438 289 0 20 chr1 89319513 89319612 -107875820 + PB1D10 SINE Alu 1 97 -20 7 1266 438 280 34 20 chr1 89320706 89320852 -107874580 - B1F2 SINE Alu 0 149 2 7 1266 754 258 150 29 chr1 89322129 89322577 -107872855 - L1MB3 LINE L1 -50 6130 5634 7 1266 339 232 122 25 chr1 89322636 89322818 -107872614 - L1MB3 LINE L1 -648 5532 5329 7 1266 1230 54 0 0 chr1 89322900 89323048 -107872384 + B1_Mus1 SINE Alu 1 148 0 7 1266 1018 79 21 7 chr1 89323333 89323474 -107871958 - B1_Mus1 SINE Alu -4 144 2 7 1266 189 0 0 0 chr1 89323512 89323533 -107871899 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1266 330 229 140 103 chr1 89324041 89324093 -107871339 + B3 SINE B2 62 113 -103 7 1266 635 127 363 18 chr1 89324093 89324261 -107871171 - URR1A DNA MER1_type 0 226 1 7 1266 330 229 140 103 chr1 89324261 89324315 -107871117 + B3 SINE B2 114 172 -44 7 1266 243 211 13 78 chr1 89324697 89324774 -107870658 - PB1D7 SINE Alu 0 120 49 7 1266 581 149 87 40 chr1 89324838 89324964 -107870468 - B1_Mur3 SINE Alu -17 132 1 7 1266 676 252 8 0 chr1 89325544 89325675 -107869757 - B1_Mur4 SINE Alu -8 142 11 8 1266 2265 310 64 16 chr1 89326183 89327180 -107868252 - Lx8 LINE L1 -196 7277 6233 8 1266 373 282 0 0 chr1 89327528 89327606 -107867826 - ID4 SINE ID -3 80 3 8 1266 268 252 55 27 chr1 89327796 89327906 -107867526 - L1MC3 LINE L1 -3 7782 7670 8 1266 1096 281 27 73 chr1 89327903 89328380 -107867052 - Lx9 LINE L1 -481 7163 6709 8 1266 390 275 35 7 chr1 89328434 89328577 -107866855 - L1MC3 LINE L1 -315 7470 7324 8 1266 322 276 0 0 chr1 89328590 89328666 -107866766 - ID4_ SINE ID -2 81 6 8 1266 368 282 18 72 chr1 89328908 89329019 -107866413 - PB1D10 SINE Alu -8 109 5 8 1266 261 291 10 131 chr1 89328948 89329047 -107866385 - B4 SINE B4 -141 151 65 8 1266 21 0 0 0 chr1 89329522 89329543 -107865889 + GC_rich Low_complexity Low_complexity 1 21 0 8 1266 192 77 0 0 chr1 89330451 89330477 -107864955 + (CAG)n Simple_repeat Simple_repeat 3 28 0 8 1266 257 293 0 132 chr1 89330849 89330963 -107864469 + MT2B LTR ERVL 156 254 -347 8 1266 517 268 46 30 chr1 89330863 89330994 -107864438 + B1_Mur1 SINE Alu 5 137 -12 8 1266 954 121 11 51 chr1 89331004 89331271 -107864161 + CT-rich Low_complexity Low_complexity 1 256 0 8 1266 194 246 0 16 chr1 89331269 89331331 -107864101 + T-rich Low_complexity Low_complexity 2 62 0 8 1266 390 311 6 55 chr1 89332005 89332153 -107863279 + B3 SINE B2 2 145 -53 8 1266 241 346 18 27 chr1 89332106 89332216 -107863216 - RSINE1 SINE B4 -31 134 26 8 1266 421 209 35 14 chr1 89333651 89333796 -107861636 - B3A SINE B2 -6 210 18 8 1266 298 243 63 36 chr1 89333861 89333972 -107861460 + Lx8 LINE L1 7273 7386 -87 8 1266 623 201 11 11 chr1 89334003 89334179 -107861253 + (TA)n Simple_repeat Simple_repeat 2 177 0 8 1266 342 0 0 0 chr1 89334179 89334217 -107861215 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1266 1660 31 5 0 chr1 89334587 89334778 -107860654 - B2_Mm1a SINE B2 -1 192 1 8 1266 1202 153 46 14 chr1 89335188 89335407 -107860025 - URR1A DNA MER1_type 0 226 1 8 1266 583 204 208 36 chr1 89335458 89335626 -107859806 + B3 SINE B2 9 205 -11 8 1266 438 266 27 18 chr1 89335969 89336080 -107859352 - B4 SINE B4 -63 229 118 8 1266 416 256 0 15 chr1 89336112 89336247 -107859185 + C-rich Low_complexity Low_complexity 3 135 0 8 1266 1241 35 7 0 chr1 89336263 89336407 -107859025 - B1_Mus2 SINE Alu 0 147 3 8 1266 380 274 10 21 chr1 89336411 89336508 -107858924 - B4 SINE B4 -195 97 2 8 1266 219 69 0 0 chr1 89336998 89337027 -107858405 + (CAG)n Simple_repeat Simple_repeat 1 29 0 8 1266 240 167 0 0 chr1 89337114 89337162 -107858270 + (CAG)n Simple_repeat Simple_repeat 3 50 0 8 1266 314 294 53 38 chr1 89337733 89337864 -107857568 + L1ME4a LINE L1 5980 6112 -12 8 1266 806 258 100 9 chr1 89337922 89338153 -107857279 + MIRb SINE MIR 7 258 -10 8 1266 390 243 121 34 chr1 89338197 89338346 -107857086 - MIRb SINE MIR -14 254 93 8 1266 220 200 25 0 chr1 89339502 89339542 -107855890 - MIRm SINE MIR -17 259 219 8 1266 207 0 0 0 chr1 89339565 89339588 -107855844 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1266 721 282 6 0 chr1 89339604 89339760 -107855672 - MIRb SINE MIR -89 179 23 8 1266 297 51 0 0 chr1 89340362 89340401 -107855031 + (CAG)n Simple_repeat Simple_repeat 1 39 0 8 1266 21 0 0 0 chr1 89340470 89340491 -107854941 + AT_rich Low_complexity Low_complexity 1 21 0 8 1266 1046 174 48 11 chr1 89340752 89340938 -107854494 - URR1A DNA MER1_type 0 226 34 8 1266 753 329 137 19 chr1 89340993 89341467 -107853965 + MER82 DNA MER2_type 30 559 -94 8 1266 203 186 51 0 chr1 89342132 89342191 -107853241 + T-rich Low_complexity Low_complexity 4 65 0 8 1266 1102 113 0 7 chr1 89342196 89342347 -107853085 - B1_Mur4 SINE Alu 0 150 1 8 1266 645 267 84 34 chr1 89342563 89342766 -107852666 - B3A SINE B2 0 216 3 8 1266 531 0 0 0 chr1 89343628 89343687 -107851745 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 8 1266 25 0 0 0 chr1 89347347 89347372 -107848060 + AT_rich Low_complexity Low_complexity 1 25 0 8 1266 255 279 0 0 chr1 89347940 89348001 -107847431 - tRNA-Ala-GCY_ tRNA tRNA -4 71 11 8 1266 541 280 231 7 chr1 89347996 89348269 -107847163 - MER2 DNA MER2_type -9 336 3 8 1266 1440 223 111 34 chr1 89349285 89349665 -107845767 - MTD LTR MaLR -2 417 9 8 1266 470 317 165 99 chr1 89350351 89350817 -107844615 - MLT1J LTR MaLR -15 497 1 8 1266 229 276 71 10 chr1 89351908 89352007 -107843425 - L1MC4a LINE L1 -1414 6581 6477 8 1266 1113 247 172 10 chr1 89352131 89352638 -107842794 + Tigger2b DNA MER2_type 70 658 -68 8 1266 232 319 33 0 chr1 89352678 89352769 -107842663 - L1MC4a LINE L1 -1419 6463 6370 8 1266 518 261 60 0 chr1 89353944 89354078 -107841354 - MTE2a-int LTR MaLR -1424 156 15 8 1266 484 207 63 67 chr1 89354069 89354213 -107841219 - MTE2a LTR MaLR -13 366 227 8 1266 2145 127 112 6 chr1 89354237 89354586 -107840846 - ORR1B1 LTR MaLR -8 386 1 8 1266 306 194 321 8 chr1 89354586 89354713 -107840719 - MTE2a LTR MaLR -160 219 52 8 1266 532 113 48 23 chr1 89355570 89355669 -107839763 + B1F SINE Alu 13 108 -12 8 1266 314 100 17 0 chr1 89355673 89355733 -107839699 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 1266 240 86 0 0 chr1 89355733 89355768 -107839664 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1266 180 0 0 0 chr1 89355840 89355860 -107839572 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 1266 1242 63 6 0 chr1 89355860 89356018 -107839414 - B2_Mm1a SINE B2 -33 160 2 8 1266 260 232 54 0 chr1 89356165 89356221 -107839211 - LTR33B LTR ERVL 0 503 445 8 1266 684 193 45 115 chr1 89356271 89356500 -107838932 + MTEa LTR MaLR 133 379 0 8 1266 2264 90 66 14 chr1 89356705 89357054 -107838378 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1266 53735 29 9 2 chr1 89357054 89363481 -107831951 + IAPEz-int LTR ERVK 8 6478 -3 8 1266 2287 87 66 14 chr1 89363485 89363834 -107831598 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1266 778 312 55 15 chr1 89364118 89364391 -107831041 + B4A SINE B4 3 286 -6 8 1266 1025 37 8 0 chr1 89364431 89364565 -107830867 + (TAGA)n Simple_repeat Simple_repeat 3 137 0 8 1266 254 305 83 8 chr1 89364672 89364804 -107830628 + L1M5 LINE L1 5600 5741 -421 8 1266 356 259 12 24 chr1 89365014 89365097 -107830335 + ORR1E LTR MaLR 3 84 -275 8 1266 240 247 104 23 chr1 89365343 89365436 -107829996 + ORR1E LTR MaLR 280 379 0 8 1266 193 319 50 33 chr1 89365605 89365725 -107829707 - L2 LINE L2 -349 3070 2949 8 1266 432 55 0 0 chr1 89365823 89365878 -107829554 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1266 252 0 0 0 chr1 89366268 89366296 -107829136 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1266 576 111 8 17 chr1 89366296 89366415 -107829017 + (GA)n Simple_repeat Simple_repeat 2 119 0 8 1266 1284 89 0 0 chr1 89366437 89366617 -107828815 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1266 504 0 0 0 chr1 89366665 89366721 -107828711 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1266 360 111 0 0 chr1 89366721 89366774 -107828658 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1266 216 86 0 0 chr1 89370270 89370305 -107825127 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1266 22 0 0 0 chr1 89372324 89372346 -107823086 + GC_rich Low_complexity Low_complexity 1 22 0 8 1266 381 282 55 0 chr1 89372899 89373009 -107822423 + PB1D10 SINE Alu 2 117 0 8 1266 256 322 98 16 chr1 89373345 89373468 -107821964 - L3 LINE CR1 -487 4002 3870 8 1266 351 287 14 1 chr1 89375034 89375152 -107820280 - B1F2 SINE Alu -1 119 1 8 1266 909 249 3 14 chr1 89378036 89378388 -107817044 + (TG)n Simple_repeat Simple_repeat 1 347 0 8 1266 776 200 0 6 chr1 89378400 89378581 -107816851 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1266 1251 134 65 28 chr1 89379435 89379650 -107815782 + URR1A DNA MER1_type 1 223 -3 8 1266 267 31 0 0 chr1 89380278 89380310 -107815122 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1266 450 0 0 0 chr1 89380310 89380359 -107815073 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1266 189 74 0 0 chr1 89381616 89381643 -107813789 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 8 1266 2999 69 13 2 chr1 89381798 89382193 -107813239 + MTB_Mm LTR MaLR 1 399 -8 8 1266 369 149 0 0 chr1 89385277 89385344 -107810088 + (TCC)n Simple_repeat Simple_repeat 1 67 0 8 1266 1095 263 28 45 chr1 89385717 89386008 -107809424 - B4 SINE B4 0 292 7 8 1266 1412 61 44 0 chr1 89386798 89386978 -107808454 - B2_Mm2 SINE B2 -7 188 1 8 1266 252 343 86 59 chr1 89387262 89387414 -107808018 + MLT1D LTR MaLR 1 156 -349 8 1266 1111 244 93 49 chr1 89387429 89387774 -107807658 - MTE2a LTR MaLR -1 378 19 8 1266 281 291 50 12 chr1 89389237 89389317 -107806115 + ID2 SINE ID 1 83 0 8 1266 241 312 139 95 chr1 89389573 89389823 -107805609 + ORR1E LTR MaLR 49 304 -55 8 1266 740 217 0 40 chr1 89389823 89389972 -107805460 - B1_Mur2 SINE Alu -6 143 1 8 1266 241 312 139 95 chr1 89389972 89390015 -107805417 + ORR1E LTR MaLR 305 355 -4 8 1266 498 17 0 0 chr1 89390036 89390095 -107805337 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 8 1266 201 147 0 0 chr1 89390758 89390792 -107804640 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 158 1178 244 39 1 chr1 89391009 89391299 -107804133 + MTE2b LTR MaLR 1 317 -62 8 1267 351 0 0 0 chr1 89392209 89392248 -107803184 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 8 1267 292 229 12 18 chr1 89392467 89392636 -107802796 + (TG)n Simple_repeat Simple_repeat 1 168 0 8 1267 523 250 70 32 chr1 89392825 89392982 -107802450 - RSINE1 SINE B4 0 165 3 8 1267 180 176 0 0 chr1 89393071 89393105 -107802327 + CT-rich Low_complexity Low_complexity 4 37 0 8 1267 217 278 0 18 chr1 89393109 89393164 -107802268 - ID4 SINE ID -21 62 9 8 1267 836 226 18 6 chr1 89393356 89393521 -107801911 + ID_B1 SINE B4 1 167 -57 8 1267 556 210 166 37 chr1 89393638 89393801 -107801631 - B3A SINE B2 -14 184 1 8 1267 692 250 59 45 chr1 89393905 89394127 -107801305 - B4 SINE B4 -66 226 2 8 1267 394 225 146 21 chr1 89394321 89394462 -107800970 - B1F SINE Alu 0 149 1 9 1267 222 37 0 0 chr1 89394582 89394609 -107800823 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1267 707 262 0 18 chr1 89394662 89394829 -107800603 - B3 SINE B2 -44 172 9 9 1267 333 0 0 0 chr1 89394829 89394866 -107800566 + (T)n Simple_repeat Simple_repeat 1 37 0 9 1267 654 248 6 32 chr1 89394942 89395100 -107800332 + RSINE1 SINE B4 12 165 0 9 1267 221 167 0 23 chr1 89395100 89395143 -107800289 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1267 273 234 15 146 chr1 89395160 89395177 -107800255 + YREP_Mm Unknown Unknown 218 263 -1549 9 1267 376 278 0 11 chr1 89395177 89395268 -107800164 - B1F SINE Alu -54 95 6 9 1267 279 292 116 70 chr1 89395205 89395334 -107800098 - B4 SINE B4 -139 153 19 9 1267 273 234 15 146 chr1 89395268 89395290 -107800142 + YREP_Mm Unknown Unknown 264 330 -1482 9 1267 315 292 114 21 chr1 89395861 89396001 -107799431 + MLT1A1 LTR MaLR 256 408 0 9 1267 618 237 74 0 chr1 89396248 89396310 -107799122 + ID SINE ID 11 82 -142 9 1267 282 347 21 21 chr1 89396310 89396384 -107799048 + B1_Mm SINE Alu 1 76 -71 9 1267 860 183 133 0 chr1 89396384 89396564 -107798868 + B3 SINE B2 1 204 -12 9 1267 282 347 21 21 chr1 89396564 89396586 -107798846 + B1_Mm SINE Alu 77 96 -51 9 1267 376 172 0 0 chr1 89396614 89396631 -107798801 + ID_B1 SINE B4 154 211 -13 9 1267 220 191 64 0 chr1 89396631 89396672 -107798760 + B1_Mus2 SINE Alu 91 134 -13 9 1267 1191 85 0 0 chr1 89396672 89396837 -107798595 + (GGA)n Simple_repeat Simple_repeat 3 167 0 9 1267 404 262 58 99 chr1 89397150 89397192 -107798240 - B2_Mm2 SINE B2 -12 183 142 9 1267 375 105 0 0 chr1 89397192 89397249 -107798183 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1267 643 262 58 99 chr1 89397249 89397397 -107798035 - B3A SINE B2 -52 146 1 9 1267 245 27 54 0 chr1 89397829 89397866 -107797566 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1267 1038 45 0 63 chr1 89397870 89398013 -107797419 - B1_Mus2 SINE Alu -12 135 2 9 1267 197 65 0 31 chr1 89398432 89398464 -107796968 + (TTA)n Simple_repeat Simple_repeat 2 32 0 9 1267 594 239 18 23 chr1 89398475 89398633 -107796799 - ID_B1 SINE B4 -63 229 79 9 1267 237 132 0 0 chr1 89399028 89399066 -107796366 + (TAA)n Simple_repeat Simple_repeat 2 39 0 9 1267 903 107 167 0 chr1 89399186 89399336 -107796096 + B2_Mm2 SINE B2 3 177 -18 9 1267 309 51 0 0 chr1 89399990 89400029 -107795403 + (TCC)n Simple_repeat Simple_repeat 2 40 0 9 1267 817 270 92 100 chr1 89401739 89402010 -107793422 - B4 SINE B4 0 292 24 9 1267 365 230 342 31 chr1 89402486 89402778 -107792654 + MLT1A0 LTR MaLR 7 389 -19 9 1267 228 232 57 14 chr1 89403062 89403132 -107792300 + MLT1A0 LTR MaLR 336 408 0 9 1267 654 13 0 0 chr1 89403219 89403294 -107792138 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 9 1267 1480 53 26 5 chr1 89403294 89403485 -107791947 + B2_Mm2 SINE B2 1 195 0 9 1267 2062 133 66 11 chr1 89403509 89403873 -107791559 + ORR1C2 LTR MaLR 1 384 0 9 1267 185 387 0 0 chr1 89404603 89404665 -107790767 - L2a LINE L2 -8 3418 3357 9 1267 478 235 72 14 chr1 89405500 89405638 -107789794 + B1F1 SINE Alu 1 146 -3 9 1267 213 161 0 75 chr1 89406963 89407030 -107788402 + G-rich Low_complexity Low_complexity 1 62 0 9 1267 513 0 0 0 chr1 89407359 89407416 -107788016 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1267 848 221 13 74 chr1 89407781 89408011 -107787421 - B3 SINE B2 0 216 1 9 1267 971 247 142 71 chr1 89408114 89408293 -107787139 + MTE2a LTR MaLR 2 170 -209 9 1267 180 0 0 0 chr1 89408293 89408313 -107787119 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 9 1267 971 247 142 71 chr1 89408313 89408486 -107786946 + MTE2a LTR MaLR 171 378 -1 9 1267 495 258 82 173 chr1 89408903 89409123 -107786309 - MLT1A0 LTR MaLR -165 200 1 9 1267 305 331 114 7 chr1 89409336 89409476 -107785956 - MLT-int LTR MaLR -141 1594 1440 9 1267 1054 271 14 63 chr1 89409522 89409809 -107785623 + MTEb LTR MaLR 106 378 -1 9 1267 1058 176 71 5 chr1 89410060 89410271 -107785161 - URR1A DNA MER1_type 0 226 2 9 1267 306 0 0 0 chr1 89410401 89410435 -107784997 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 9 1267 363 269 145 8 chr1 89410494 89410625 -107784807 + B4A SINE B4 142 290 -2 9 1267 207 175 70 0 chr1 89410627 89410684 -107784748 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1267 21 0 0 0 chr1 89410684 89410705 -107784727 + AT_rich Low_complexity Low_complexity 1 21 0 9 1267 3230 11 0 0 chr1 89410869 89411237 -107784195 - MT2_Mm LTR ERVL -125 368 1 9 1267 319 0 0 0 chr1 89411237 89411275 -107784157 - MERVL-int LTR ERVL 0 5485 5448 9 1267 393 144 58 46 chr1 89411275 89411362 -107784070 - ORR1A3-int LTR MaLR -1323 640 553 9 1267 274 262 0 0 chr1 89411581 89411642 -107783790 + MTE2a LTR MaLR 70 130 -249 9 1267 201 139 70 0 chr1 89412176 89412219 -107783213 + L2b LINE L2 3330 3375 0 9 1267 1932 112 66 88 chr1 89412424 89412786 -107782646 + ORR1B1 LTR MaLR 41 394 0 9 1267 1384 245 72 38 chr1 89412782 89413170 -107782262 + MTD LTR MaLR 4 399 -20 9 1267 887 234 125 131 chr1 89413187 89413546 -107781886 + MTE2a LTR MaLR 10 366 -13 9 1267 226 297 3 62 chr1 89413607 89413686 -107781746 - ID4 SINE ID -66 86 11 9 1267 512 316 45 41 chr1 89413799 89414043 -107781389 + MER77 LTR ERVL 358 602 -5 9 1267 1218 78 42 0 chr1 89414745 89414912 -107780520 + B2_Mm2 SINE B2 21 194 -1 9 1267 315 71 0 0 chr1 89414912 89414954 -107780478 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 9 1267 492 48 0 0 chr1 89415649 89415712 -107779720 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1267 811 276 137 36 chr1 89415720 89415795 -107779637 - B4A SINE B4 -1 291 222 9 1267 1226 51 23 0 chr1 89415795 89415970 -107779462 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 9 1267 811 276 137 36 chr1 89415970 89416142 -107779290 - B4A SINE B4 -71 221 21 9 1267 483 243 34 48 chr1 89416318 89416465 -107778967 - B1F SINE Alu 0 149 5 9 1267 240 281 15 15 chr1 89416521 89416586 -107778846 + RSINE1 SINE B4 2 66 -99 9 1267 368 40 0 20 chr1 89417906 89417916 -107777516 + (TC)n Simple_repeat Simple_repeat 2 11 0 9 1267 1043 106 6 0 chr1 89417916 89418076 -107777356 + (TTCC)n Simple_repeat Simple_repeat 4 164 0 9 1267 368 40 0 20 chr1 89418076 89418116 -107777316 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 1267 603 316 86 18 chr1 89418524 89418850 -107776582 + L1MC4a LINE L1 5560 5907 -1975 9 1267 692 256 15 0 chr1 89418904 89419041 -107776391 + RSINE1 SINE B4 25 163 -2 9 1267 183 156 0 0 chr1 89419102 89419134 -107776298 + CT-rich Low_complexity Low_complexity 4 35 0 9 1267 288 0 0 0 chr1 89419268 89419300 -107776132 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1267 288 0 0 0 chr1 89419300 89419332 -107776100 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1267 363 136 0 0 chr1 89419657 89419716 -107775716 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 9 1267 321 309 28 42 chr1 89419821 89419963 -107775469 - B1F SINE Alu -2 147 8 9 1267 552 252 0 61 chr1 89420108 89420239 -107775193 + RSINE1 SINE B4 2 124 -41 9 1267 324 48 0 0 chr1 89420242 89420284 -107775148 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1267 225 271 59 50 chr1 89420509 89420610 -107774822 + L2b LINE L2 3249 3350 -25 9 1267 527 223 0 67 chr1 89421073 89421193 -107774239 + PB1D10 SINE Alu 2 113 -4 9 1267 183 100 0 0 chr1 89421194 89421224 -107774208 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 9 1267 742 136 114 0 chr1 89421804 89421936 -107773496 + B1_Mm SINE Alu 1 147 0 9 1267 1163 68 0 26 chr1 89421940 89422091 -107773341 + B1_Mus2 SINE Alu 1 147 0 9 1267 183 89 52 35 chr1 89422096 89422122 -107773310 + A-rich Low_complexity Low_complexity 2 25 0 9 1267 1333 99 5 10 chr1 89422122 89422316 -107773116 + B2_Mm1a SINE B2 1 193 0 9 1267 183 89 52 35 chr1 89422316 89422347 -107773085 + A-rich Low_complexity Low_complexity 26 58 0 9 1267 21 0 0 0 chr1 89422511 89422532 -107772900 + AT_rich Low_complexity Low_complexity 1 21 0 9 1267 370 108 348 18 chr1 89422890 89423002 -107772430 - B2_Mm2 SINE B2 0 195 47 9 1267 1262 98 17 0 chr1 89423087 89423261 -107772171 - B2_Mm1t SINE B2 -14 179 3 9 1267 396 0 0 0 chr1 89423513 89423557 -107771875 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1267 731 194 70 21 chr1 89424668 89424810 -107770622 + B1_Mur1 SINE Alu 1 149 0 9 1267 559 295 147 33 chr1 89424823 89425068 -107770364 + B4A SINE B4 2 274 -18 9 1267 272 286 32 0 chr1 89425084 89425147 -107770285 + ID_B1 SINE B4 153 217 -7 9 1267 228 159 33 22 chr1 89425411 89425501 -107769931 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 9 1267 827 96 0 17 chr1 89425674 89425791 -107769641 - B1_Mur3 SINE Alu -34 115 1 9 1267 447 217 31 101 chr1 89425791 89425844 -107769588 - MT2B LTR ERVL -450 151 110 9 1267 10683 20 4 1 chr1 89426062 89427282 -107768150 + L1Md_T LINE L1 4363 5586 -297 9 1267 8556 36 0 0 chr1 89427282 89428277 -107767155 + L1Md_T LINE L1 5587 6581 -1 9 1267 1357 231 68 26 chr1 89428402 89428753 -107766679 + MTE2b LTR MaLR 1 366 -13 9 1267 750 160 8 8 chr1 89428891 89429017 -107766415 - B1_Mur4 SINE Alu -23 127 2 9 1267 398 257 35 0 chr1 89429024 89429137 -107766295 - ID_B1 SINE B4 -38 186 70 9 1267 315 325 23 39 chr1 89429374 89429502 -107765930 + MamRep564 Unknown Unknown 46 171 -186 9 1267 1297 131 33 9 chr1 89429747 89429962 -107765470 + MTC LTR MaLR 1 220 -201 9 1267 462 276 36 36 chr1 89430168 89430393 -107765039 - L1MC5 LINE L1 -36 7925 7701 9 1267 694 310 69 15 chr1 89431018 89431280 -107764152 + RMER15 LTR ERVL 300 575 0 9 1267 192 200 40 0 chr1 89431793 89431868 -107763564 + (TA)n Simple_repeat Simple_repeat 2 79 0 9 1267 2310 117 53 72 chr1 89432519 89432934 -107762498 + MTB_Mm LTR MaLR 1 407 0 1 1267 596 280 46 101 chr1 89433161 89433467 -107761965 + B4A SINE B4 3 291 -1 1 1267 807 236 158 10 chr1 89433624 89433928 -107761504 + L1M5 LINE L1 4495 4843 -1303 1 1267 722 234 27 7 chr1 89433965 89434111 -107761321 + B1F SINE Alu 1 149 0 1 1267 185 35 69 0 chr1 89434121 89434150 -107761282 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1267 348 24 0 0 chr1 89434151 89434192 -107761240 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 1267 571 247 20 7 chr1 89434490 89434637 -107760795 - B1F SINE Alu 0 149 1 1 1267 255 31 0 0 chr1 89434655 89434687 -107760745 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1267 259 238 132 33 chr1 89434705 89434857 -107760575 + L1M5 LINE L1 5266 5432 -741 1 1267 468 318 194 35 chr1 89434927 89435211 -107760221 + MLT1J LTR MaLR 100 428 -84 1 1267 2127 146 61 11 chr1 89435227 89435586 -107759846 + MTC LTR MaLR 45 421 0 1 1267 539 262 92 0 chr1 89435994 89436135 -107759297 + ID_B1 SINE B4 4 157 -67 1 1267 4962 96 10 73 chr1 89436154 89436960 -107758472 - RMER6A LTR ERVK 0 756 2 1 1267 331 203 13 39 chr1 89437067 89437144 -107758288 + ID_B1 SINE B4 150 224 0 1 1267 395 284 70 84 chr1 89438311 89438690 -107756742 + ORR1E LTR MaLR 7 365 -5 1 1267 376 319 43 0 chr1 89438766 89438882 -107756550 + Charlie5 DNA MER1_type 1 121 -2503 1 1267 775 241 36 58 chr1 89438898 89439123 -107756309 + Charlie5 DNA MER1_type 2241 2460 -164 1 1267 291 219 180 40 chr1 89439113 89439213 -107756219 - PB1D7 SINE Alu -2 118 5 1 1267 333 285 89 89 chr1 89439230 89439523 -107755909 - L1MCa LINE L1 -4536 1972 1680 1 1267 3911 103 5 25 chr1 89439827 89440422 -107755010 - RLTR19-int LTR ERVK -4125 2012 1430 1 1267 243 342 0 0 chr1 89440423 89440540 -107754892 + (CCA)n Simple_repeat Simple_repeat 1 117 0 1 1267 180 216 0 0 chr1 89440552 89440603 -107754829 + (CCA)n Simple_repeat Simple_repeat 1 51 0 1 1267 1017 215 9 36 chr1 89441472 89441694 -107753738 - B3 SINE B2 0 216 1 1 1267 251 146 18 0 chr1 89442099 89442154 -107753278 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1267 229 316 0 0 chr1 89443244 89443301 -107752131 - BLACKJACK DNA AcHobo 0 2944 2888 1 1267 821 197 13 20 chr1 89444020 89444170 -107751262 - B1_Mur1 SINE Alu 0 149 1 1 1267 450 0 0 0 chr1 89444184 89444234 -107751198 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 1267 664 203 34 55 chr1 89445455 89445601 -107749831 + B1_Mur1 SINE Alu 1 143 -6 1 1267 1011 205 291 14 chr1 89445909 89446201 -107749231 + MTE2b LTR MaLR 5 377 -2 1 1267 233 123 0 58 chr1 89446680 89446749 -107748683 + G-rich Low_complexity Low_complexity 4 68 0 1 1267 1047 109 29 0 chr1 89446871 89447008 -107748424 + B1_Mm SINE Alu 1 141 -6 1 1267 441 0 0 0 chr1 89447010 89447059 -107748373 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1267 280 338 78 0 chr1 89447600 89447742 -107747690 - MIRc SINE MIR -77 191 39 1 1267 239 281 61 0 chr1 89448054 89448136 -107747296 - MER5A1 DNA MER1_type -30 136 50 1 1267 1169 83 0 0 chr1 89448476 89448621 -107746811 + B1_Mus1 SINE Alu 2 146 -2 1 1267 210 118 0 0 chr1 89448940 89448974 -107746458 + (TGGGGG)n Simple_repeat Simple_repeat 4 37 0 1 1267 456 143 0 0 chr1 89449377 89449461 -107745971 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1 1267 296 244 26 0 chr1 89449563 89449641 -107745791 - ID2 SINE ID -3 80 1 1 1267 180 204 0 140 chr1 89449654 89449711 -107745721 + L3 LINE CR1 115 163 -4326 1 1267 258 105 0 0 chr1 89450139 89450177 -107745255 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1267 251 238 15 73 chr1 89450589 89450601 -107744831 + B4A SINE B4 81 88 -204 1 1267 356 211 62 0 chr1 89450601 89450691 -107744741 + PB1D10 SINE Alu 4 103 -46 1 1267 200 61 61 0 chr1 89450691 89450724 -107744708 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1 1267 194 0 39 0 chr1 89450786 89450812 -107744620 + (AGGGGG)n Simple_repeat Simple_repeat 4 30 0 1 1267 1175 225 28 147 chr1 89451435 89451863 -107743569 + MTE2a LTR MaLR 1 377 -2 1 1267 871 158 7 14 chr1 89452318 89452459 -107742973 + B1_Mur3 SINE Alu 10 149 0 1 1267 1916 212 26 39 chr1 89452518 89452934 -107742498 - MTD LTR MaLR -8 411 1 1 1267 652 284 46 55 chr1 89452934 89453280 -107742152 - L1MA8 LINE L1 -361 5930 5588 1 1267 2432 265 135 12 chr1 89453284 89453839 -107741593 + L1M2 LINE L1 4032 4648 -1495 1 1267 3530 20 5 0 chr1 89453839 89454233 -107741199 - MTA_Mm LTR MaLR 0 396 1 1 1267 2432 265 135 12 chr1 89454233 89454733 -107740699 + L1M2 LINE L1 4649 5217 -926 1 1267 1568 209 48 37 chr1 89454751 89455104 -107740328 - ORR1D1 LTR MaLR 0 374 18 1 1267 881 214 50 94 chr1 89455112 89455210 -107740222 + L1M2 LINE L1 5230 5324 -979 1 1267 2380 131 19 11 chr1 89455210 89455572 -107739860 + ORR1B2 LTR MaLR 1 365 -2 1 1267 881 224 96 69 chr1 89455572 89455831 -107739601 + L1M2 LINE L1 5325 5601 -702 1 1267 744 300 51 0 chr1 89455843 89456116 -107739316 + L1MB7 LINE L1 5686 5972 -212 1 1267 2070 171 36 18 chr1 89456644 89457031 -107738401 - ORR1B1 LTR MaLR 0 394 1 1 1267 413 197 14 0 chr1 89457136 89457207 -107738225 + ID_B1 SINE B4 95 166 -58 1 1267 387 255 40 30 chr1 89457207 89457237 -107738195 + PB1D10 SINE Alu 14 115 -2 1 1267 1182 148 43 65 chr1 89457993 89458224 -107737208 - URR1A DNA MER1_type 0 226 1 1 1267 292 312 136 85 chr1 89458224 89458459 -107736973 - L4 LINE RTE -1120 909 663 1 1267 810 141 8 15 chr1 89458574 89458704 -107736728 + B1_Mus2 SINE Alu 19 147 0 1 1267 1018 262 42 58 chr1 89459437 89459887 -107735545 - MTD LTR MaLR 0 419 1 1 1267 323 23 23 0 chr1 89460085 89460129 -107735303 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 1 1267 330 98 0 0 chr1 89460174 89460225 -107735207 + (ATG)n Simple_repeat Simple_repeat 1 51 0 1 1267 346 266 0 0 chr1 89460736 89460815 -107734617 - MIRb SINE MIR -138 130 52 1 1267 346 282 176 17 chr1 89461811 89461930 -107733502 - B1F SINE Alu -2 147 10 1 1267 507 135 0 0 chr1 89462006 89462080 -107733352 - B1_Mus2 SINE Alu -6 141 68 1 1267 592 178 155 0 chr1 89462091 89462220 -107733212 + B1_Mur1 SINE Alu 1 149 0 1 1267 1130 90 11 0 chr1 89462252 89462429 -107733003 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 1 1267 598 311 104 39 chr1 89462828 89463192 -107732240 - MLT1B LTR MaLR -1 389 2 1 1267 242 193 0 0 chr1 89463671 89463728 -107731704 - MT2A LTR ERVL 0 533 477 1 1267 908 239 171 17 chr1 89464478 89464712 -107730720 - B4 SINE B4 -5 287 18 1 1267 431 309 0 9 chr1 89464771 89464882 -107730550 - B1_Mur1 SINE Alu -2 147 38 1 1267 230 224 82 0 chr1 89464899 89464948 -107730484 - PB1D7 SINE Alu -63 57 5 1 1267 2276 109 16 3 chr1 89466131 89466453 -107728979 - ORR1A2 LTR MaLR -1 326 1 1 1267 236 280 138 51 chr1 89466804 89466953 -107728479 - MIRb SINE MIR -77 185 37 1 1267 633 244 30 55 chr1 89466995 89467160 -107728272 + ID_B1 SINE B4 64 224 0 1 1267 521 75 6 8 chr1 89467985 89468062 -107727370 - ORR1A2 LTR MaLR 0 400 263 1 1267 266 270 27 0 chr1 89469836 89469910 -107725522 + MER45R DNA Tip100 1505 1580 -1 1 1267 543 329 94 84 chr1 89470745 89471020 -107724412 - B4A SINE B4 -1 291 14 1 1267 396 271 135 43 chr1 89471165 89471373 -107724059 - MIRb SINE MIR -24 244 18 1 1267 554 295 40 81 chr1 89471431 89471789 -107723643 - MLT1B LTR MaLR -2 678 313 1 1267 743 295 68 4 chr1 89471856 89472091 -107723341 - B4A SINE B4 -35 257 8 1 1267 391 258 135 74 chr1 89472093 89472256 -107723176 - MLT1F2 LTR MaLR -382 178 6 1 1267 192 102 61 0 chr1 89472477 89472526 -107722906 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1267 533 294 119 23 chr1 89472699 89473010 -107722422 + Lx8 LINE L1 5531 5903 -1570 1 1267 217 281 30 45 chr1 89473071 89473138 -107722294 - MIR SINE MIR -115 147 82 1 1267 764 227 63 17 chr1 89473312 89473487 -107721945 - B3A SINE B2 -11 187 5 1 1267 213 211 0 0 chr1 89473509 89473561 -107721871 + CT-rich Low_complexity Low_complexity 1 52 0 1 1267 732 266 80 66 chr1 89473605 89473871 -107721561 - B4 SINE B4 0 292 41 1 1267 4347 71 3 11 chr1 89474073 89474640 -107720792 - L1Md_F2 LINE L1 0 6582 6020 1 1267 4970 50 27 0 chr1 89474640 89475279 -107720153 + L1_Mm LINE L1 5077 5732 -151 1 1267 818 276 101 117 chr1 89475699 89476085 -107719347 - MLT1B LTR MaLR -10 380 1 1 1267 219 346 83 26 chr1 89476122 89476267 -107719165 + MIR SINE MIR 73 230 -32 1 1267 1180 207 9 5 chr1 89476267 89476481 -107718951 + B3 SINE B2 2 216 0 1 1267 219 344 69 23 chr1 89476481 89476501 -107718931 + MIR SINE MIR 231 252 -10 1 1267 26 0 0 0 chr1 89476922 89476948 -107718484 + AT_rich Low_complexity Low_complexity 1 26 0 1 1267 862 200 14 0 chr1 89477006 89477151 -107718281 + B1_Mur1 SINE Alu 3 149 0 1 1267 394 377 24 61 chr1 89477272 89477484 -107717948 + L1MEg LINE L1 1035 1238 -4846 1 1267 2126 195 77 78 chr1 89478256 89478343 -107717089 - RLTR20A LTR ERVK 0 541 441 1 1267 590 23 45 0 chr1 89478343 89478431 -107717001 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1267 2126 195 77 78 chr1 89478431 89478865 -107716567 - RLTR20A LTR ERVK -101 440 22 1 1267 433 259 36 36 chr1 89478897 89479009 -107716423 - B3A SINE B2 -30 168 57 1 1267 230 333 8 15 chr1 89479107 89479238 -107716194 + CT-rich Low_complexity Low_complexity 3 132 0 1 1267 242 267 0 16 chr1 89479174 89479235 -107716197 + C-rich Low_complexity Low_complexity 3 62 0 1 1267 255 216 216 0 chr1 89479259 89479333 -107716099 - Lx8 LINE L1 -517 6956 6867 1 1267 211 269 15 0 chr1 89480141 89480208 -107715224 + GA-rich Low_complexity Low_complexity 1 68 0 1 1267 1067 103 7 0 chr1 89481127 89481273 -107714159 + B1_Mur4 SINE Alu 3 149 -1 1 1267 495 256 47 16 chr1 89481297 89481424 -107714008 + B1F SINE Alu 18 148 -1 1 1267 1127 41 7 7 chr1 89481551 89481699 -107713733 + L1_Mus2 LINE L1 6419 6566 0 1 1267 5783 41 0 0 chr1 89481764 89482487 -107712945 - L1Md_F2 LINE L1 0 6582 5906 1 1267 428 256 130 15 chr1 89482554 89482685 -107712747 - B1F SINE Alu -2 147 2 1 1267 2069 176 24 21 chr1 89482855 89483232 -107712200 + ORR1C1 LTR MaLR 1 378 0 1 1267 695 182 16 39 chr1 89483496 89483642 -107711790 - MTD LTR MaLR -276 143 14 1 1267 2123 162 68 17 chr1 89484470 89484855 -107710577 + MTD LTR MaLR 13 405 -14 1 1267 745 239 175 32 chr1 89486411 89486662 -107708770 - B4 SINE B4 -2 290 4 1 1267 189 0 0 0 chr1 89486978 89486999 -107708433 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 1267 944 238 174 21 chr1 89487828 89488116 -107707316 - MTD LTR MaLR -87 332 1 1 1267 638 239 39 2 chr1 89488361 89488562 -107706870 + L1MB8 LINE L1 5369 5575 -599 1 1267 739 247 54 69 chr1 89488579 89488783 -107706649 + ID_B1 SINE B4 23 223 -1 1 1267 517 269 71 12 chr1 89488785 89488954 -107706478 + L1MB8 LINE L1 5808 5986 -192 1 1267 3153 47 23 20 chr1 89489695 89490090 -107705342 + MTA_Mm LTR MaLR 1 396 0 1 1267 396 223 45 9 chr1 89490092 89490220 -107705212 - B1F SINE Alu -1 148 10 1 1267 217 322 118 47 chr1 89492168 89492295 -107703137 + MIRc SINE MIR 35 170 -98 1 1267 567 66 0 0 chr1 89492576 89492652 -107702780 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1267 463 257 48 0 chr1 89492691 89492796 -107702636 - RSINE1 SINE B4 -54 111 2 1 1267 203 222 0 0 chr1 89492823 89492859 -107702573 + L2b LINE L2 3328 3363 -12 1 1267 546 43 0 0 chr1 89494473 89494542 -107700890 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1267 305 319 116 31 chr1 89494724 89494983 -107700449 - MLT1D LTR MaLR -183 322 42 1 1267 262 308 103 0 chr1 89495689 89495796 -107699636 - MER94 DNA AcHobo -1 133 16 1 1267 354 291 70 38 chr1 89495837 89495994 -107699438 - MER5B DNA MER1_type -16 162 1 1 1267 509 94 60 0 chr1 89496001 89496118 -107699314 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 1 1267 550 303 101 19 chr1 89496186 89496764 -107698668 + L1M5 LINE L1 5137 5770 -392 1 1267 555 269 37 16 chr1 89497184 89497373 -107698059 - L1MD3 LINE L1 -13 7982 7790 1 1267 362 264 39 71 chr1 89497531 89497603 -107697829 + L1MEc LINE L1 2134 2197 -4203 1 1267 1252 54 0 0 chr1 89497603 89497751 -107697681 + B1_Mus1 SINE Alu 1 148 0 1 1267 362 264 39 71 chr1 89497751 89497833 -107697599 + L1MEc LINE L1 2198 2282 -4118 1 1267 741 277 145 40 chr1 89498222 89498621 -107696811 + MLT1D LTR MaLR 4 444 -61 1 1267 377 314 11 44 chr1 89498796 89499062 -107696370 + (CATA)n Simple_repeat Simple_repeat 1 257 0 1 1267 1679 175 65 40 chr1 89499593 89499944 -107695488 + ORR1C2 LTR MaLR 1 360 -24 1 1267 21 0 0 0 chr1 89500280 89500301 -107695131 + AT_rich Low_complexity Low_complexity 1 21 0 1 1267 270 362 41 34 chr1 89501293 89501439 -107693993 - MIRb SINE MIR -75 193 47 2 1267 237 292 14 0 chr1 89503808 89503880 -107691552 + MLT1A LTR MaLR 61 133 -257 3 1267 405 277 67 61 chr1 89503900 89504065 -107691367 + MLT1A LTR MaLR 209 374 0 3 1267 203 265 10 19 chr1 89504770 89504874 -107690558 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 4 1267 361 238 15 43 chr1 89506387 89506493 -107688939 + PB1D10 SINE Alu 13 116 -1 5 1267 306 357 42 46 chr1 89506847 89507085 -107688347 + Tigger5 DNA MER2_type 826 1062 -1344 6 1267 207 0 0 0 chr1 89507587 89507610 -107687822 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1267 448 279 54 0 chr1 89507840 89507951 -107687481 + PB1D7 SINE Alu 3 119 -1 8 1267 753 199 50 0 chr1 89508011 89508152 -107687280 + B1F1 SINE Alu 1 148 -1 9 1267 192 125 0 0 chr1 89508331 89508363 -107687069 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1267 1073 270 62 16 chr1 89509036 89509292 -107686140 + MTEa LTR MaLR 1 268 -111 1 1267 693 222 64 77 chr1 89509292 89509512 -107685920 - MTEa LTR MaLR 0 379 163 1 1267 2165 128 69 40 chr1 89509527 89509902 -107685530 - ORR1B1 LTR MaLR -8 386 1 1 1267 647 174 61 0 chr1 89509952 89510084 -107685348 + ORR1D1 LTR MaLR 1 140 -234 1 1267 228 35 0 0 chr1 89510084 89510113 -107685319 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1267 1083 129 8 154 chr1 89510163 89510410 -107685022 + URR1A DNA MER1_type 1 211 -15 1 1267 714 224 58 60 chr1 89510434 89510700 -107684732 - MLT2D LTR ERVL -37 360 90 1 1267 468 222 0 0 chr1 89510999 89511080 -107684352 + ID4_ SINE ID 2 82 -1 1 1267 282 335 190 27 chr1 89511413 89511597 -107683835 + FordPrefect DNA Tip100 77 290 -1393 1 1267 606 331 171 16 chr1 89511658 89512097 -107683335 + FordPrefect DNA Tip100 591 1097 -586 1 1267 322 286 13 0 chr1 89512096 89512173 -107683259 + PB1D10 SINE Alu 27 104 -13 2 1267 826 336 111 26 chr1 89512187 89512727 -107682705 + FordPrefect DNA Tip100 1091 1676 -7 1 1267 755 214 50 0 chr1 89512901 89513041 -107682391 + B1_Mur1 SINE Alu 1 147 -2 2 1267 526 280 130 71 chr1 89513099 89513494 -107681938 - ORR1E LTR MaLR -3 376 6 2 1267 3581 18 2 0 chr1 89513726 89514121 -107681311 + MTA_Mm LTR MaLR 1 396 0 2 1267 9228 36 6 1 chr1 89514121 89515214 -107680218 + MTA_Mm-int LTR MaLR 1 1098 0 2 1267 3581 18 2 0 chr1 89515214 89515609 -107679823 + MTA_Mm LTR MaLR 1 396 0 2 1267 636 299 23 23 chr1 89516390 89516561 -107678871 - MTEa LTR MaLR -248 171 1 1 1267 1187 61 0 13 chr1 89519086 89519235 -107676197 + B1_Mus1 SINE Alu 2 148 0 2 1267 1023 295 100 41 chr1 89521584 89522096 -107673336 - L1MB7 LINE L1 -69 6115 5574 2 158 396 0 0 0 chr1 89522152 89522196 -107673236 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1268 453 36 0 0 chr1 89522196 89522250 -107673182 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1268 764 234 7 0 chr1 89522257 89522394 -107673038 - RSINE1 SINE B4 -25 140 3 2 1268 410 202 48 0 chr1 89522503 89522587 -107672845 - B4 SINE B4 -204 88 1 2 1268 492 265 0 10 chr1 89522602 89522705 -107672727 - ID_B1 SINE B4 -7 217 116 3 1268 345 221 172 35 chr1 89522724 89522869 -107672563 - L1MB7 LINE L1 -689 5485 5321 2 1268 628 303 81 68 chr1 89523469 89523703 -107671729 + B4 SINE B4 56 292 0 3 1268 427 263 19 29 chr1 89523929 89524052 -107671380 + PB1D7 SINE Alu 7 127 -22 3 1268 417 358 137 42 chr1 89524057 89524745 -107670687 - L1ME4a LINE L1 -56 6068 5316 3 1268 438 230 0 0 chr1 89524843 89524917 -107670515 + ID4_ SINE ID 1 74 -9 3 1268 230 381 85 15 chr1 89525111 89525258 -107670174 + MIRb SINE MIR 51 204 -58 3 1268 506 338 18 80 chr1 89526022 89526247 -107669185 - B4A SINE B4 0 292 82 3 1268 291 188 0 0 chr1 89526251 89526299 -107669133 - B1F1 SINE Alu -8 141 94 3 1268 538 283 52 67 chr1 89526261 89526454 -107668978 - B4 SINE B4 -101 191 2 3 1268 241 250 0 0 chr1 89526913 89526969 -107668463 + GA-rich Low_complexity Low_complexity 1 56 0 3 1268 180 0 0 0 chr1 89527043 89527063 -107668369 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 4 1268 507 242 20 0 chr1 89527401 89527500 -107667932 - PB1D10 SINE Alu -12 105 5 4 1268 1234 55 7 0 chr1 89527859 89528005 -107667427 + B1_Mus2 SINE Alu 1 147 0 4 1268 180 0 0 0 chr1 89528005 89528025 -107667407 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 4 1268 425 318 104 27 chr1 89528730 89528989 -107666443 + L1ME4a LINE L1 5318 5596 -528 4 1268 308 235 0 56 chr1 89528990 89529002 -107666430 + B4A SINE B4 78 85 -207 4 1268 542 221 0 50 chr1 89529002 89529121 -107666311 + B1F SINE Alu 1 113 -36 4 1268 381 297 25 8 chr1 89529215 89529334 -107666098 - MIR SINE MIR -30 232 112 4 1268 344 328 112 39 chr1 89529418 89529563 -107665869 + L1ME4a LINE L1 5688 5847 -277 4 1268 1359 177 249 7 chr1 89529563 89529864 -107665568 - ORR1D1 LTR MaLR 0 374 1 4 1268 344 328 112 39 chr1 89529864 89529978 -107665454 + L1ME4a LINE L1 5848 5966 -158 4 1268 22 0 0 0 chr1 89530012 89530034 -107665398 + AT_rich Low_complexity Low_complexity 1 22 0 4 1268 1029 215 57 14 chr1 89530133 89530345 -107665087 - ID_B1 SINE B4 -2 222 2 5 1268 1144 36 36 0 chr1 89530365 89530502 -107664930 + B1_Mm SINE Alu 1 142 -5 5 1268 225 0 0 0 chr1 89530506 89530531 -107664901 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1268 995 209 25 15 chr1 89530643 89530847 -107664585 - B3 SINE B2 -10 206 1 5 1268 297 0 0 0 chr1 89532401 89532434 -107662998 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 5 1268 806 200 0 21 chr1 89532440 89532583 -107662849 - RSINE1 SINE B4 -22 143 4 5 1268 330 26 0 0 chr1 89532603 89532642 -107662790 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1268 280 304 106 37 chr1 89532642 89532830 -107662602 + L3 LINE CR1 3757 3957 -532 5 1268 207 0 0 0 chr1 89533678 89533701 -107661731 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1268 280 253 236 79 chr1 89534155 89534447 -107660985 - MLT1M LTR MaLR -312 360 23 5 1268 670 279 32 32 chr1 89534624 89534809 -107660623 + ID_B1 SINE B4 4 188 -36 6 1268 224 295 16 0 chr1 89534809 89534870 -107660562 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1268 227 200 150 62 chr1 89535585 89535665 -107659767 + LTR86A1 LTR ERVL 306 392 -121 6 1268 1502 73 5 0 chr1 89535778 89535970 -107659462 + B2_Mm1a SINE B2 1 193 0 6 1268 183 80 0 0 chr1 89537398 89537423 -107658009 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 6 1268 183 80 0 0 chr1 89537844 89537869 -107657563 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1268 586 339 128 33 chr1 89538138 89538474 -107656958 + MLT1L LTR MaLR 236 603 -7 6 1268 724 241 121 96 chr1 89538923 89539131 -107656301 + B4A SINE B4 2 230 -62 6 1268 677 239 87 48 chr1 89539131 89539338 -107656094 + B3 SINE B2 2 216 0 6 1268 724 241 121 96 chr1 89539338 89539409 -107656023 + B4A SINE B4 231 288 -4 6 1268 354 45 0 0 chr1 89539419 89539463 -107655969 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1268 188 302 101 0 chr1 89540774 89540893 -107654539 + L2a LINE L2 3130 3260 -166 7 1268 499 283 18 68 chr1 89540910 89541073 -107654359 - MLT1D LTR MaLR -39 466 312 7 1268 296 234 11 154 chr1 89541182 89541273 -107654159 - MLT1D LTR MaLR -427 78 1 7 1268 801 31 0 0 chr1 89541637 89541733 -107653699 + B1_Mm SINE Alu 52 147 0 7 1268 216 0 0 0 chr1 89541733 89541757 -107653675 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1268 300 277 0 46 chr1 89542173 89542260 -107653172 - ID4_ SINE ID 0 83 1 7 1268 295 287 81 27 chr1 89543043 89543154 -107652278 + B4 SINE B4 59 175 -117 7 1268 452 237 17 42 chr1 89543200 89543319 -107652113 + RSINE1 SINE B4 15 130 -35 7 1268 396 0 0 0 chr1 89543324 89543368 -107652064 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1268 392 319 55 34 chr1 89543517 89543666 -107651766 - L1M5 LINE L1 -2410 5472 5320 7 1268 349 248 128 10 chr1 89543667 89543769 -107651663 - PB1D10 SINE Alu -1 116 3 7 1268 28 0 0 0 chr1 89543769 89543797 -107651635 + AT_rich Low_complexity Low_complexity 1 28 0 8 1268 710 246 200 0 chr1 89543802 89543977 -107651455 + B3 SINE B2 1 210 -6 8 1268 897 170 0 0 chr1 89544015 89544150 -107651282 + B1_Mus1 SINE Alu 2 136 -12 8 1268 306 0 0 0 chr1 89544233 89544267 -107651165 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1268 592 303 22 33 chr1 89544328 89544509 -107650923 - B4A SINE B4 -25 267 89 8 1268 333 0 0 0 chr1 89544525 89544562 -107650870 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1268 243 61 0 0 chr1 89544562 89544595 -107650837 + (CCA)n Simple_repeat Simple_repeat 3 35 0 8 1268 235 266 0 112 chr1 89544596 89544685 -107650747 - B4A SINE B4 -91 133 55 8 1268 195 42 0 0 chr1 89544773 89544797 -107650635 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1268 1192 37 0 0 chr1 89544797 89544933 -107650499 - B1_Mm SINE Alu -10 137 2 8 1268 748 249 40 62 chr1 89544950 89545177 -107650255 + ID_B1 SINE B4 1 222 -2 9 1268 242 305 37 0 chr1 89546621 89546703 -107648729 + Lx8 LINE L1 7149 7233 -240 9 1268 288 348 0 21 chr1 89546703 89546797 -107648635 + RMER15 LTR ERVL 371 462 -113 9 1268 234 0 0 0 chr1 89546962 89546988 -107648444 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1268 23 54 0 0 chr1 89547017 89547054 -107648378 + AT_rich Low_complexity Low_complexity 1 37 0 9 1268 2787 127 5 26 chr1 89548141 89548488 -107646944 - MTC LTR MaLR -2 419 80 9 1268 3210 124 33 19 chr1 89548488 89549008 -107646424 - RLTR11A2 LTR ERVK 0 527 1 9 1268 2787 127 5 26 chr1 89549008 89549088 -107646344 - MTC LTR MaLR -342 79 1 9 1268 190 275 105 70 chr1 89549233 89549319 -107646113 + MIR SINE MIR 60 148 -60 9 1268 1348 259 25 62 chr1 89549467 89549825 -107645607 - MTEa LTR MaLR -29 350 6 9 1268 1242 100 0 0 chr1 89549960 89550140 -107645292 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1268 487 144 10 10 chr1 89550140 89550227 -107645205 + CT-rich Low_complexity Low_complexity 3 90 0 1 1268 23 0 0 0 chr1 89551015 89551038 -107644394 + AT_rich Low_complexity Low_complexity 1 23 0 1 1268 287 257 87 22 chr1 89551038 89551221 -107644211 - L1MC4 LINE L1 -2 8040 7846 1 1268 307 324 32 69 chr1 89551400 89551589 -107643843 - L1MC4 LINE L1 -417 7625 7444 1 1268 270 95 0 0 chr1 89551729 89551771 -107643661 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 1 1268 382 238 25 0 chr1 89551836 89551916 -107643516 + ID_B1 SINE B4 141 222 -2 1 1268 480 246 17 9 chr1 89551927 89552042 -107643390 + PB1D10 SINE Alu 1 116 -1 1 1268 233 240 0 0 chr1 89552091 89552141 -107643291 + ID4_ SINE ID 34 83 0 1 1268 849 241 106 7 chr1 89552170 89552454 -107642978 - L1MC4 LINE L1 -746 7296 6985 1 1268 308 267 61 85 chr1 89552516 89552680 -107642752 + CYRA11_Mm Unknown Y-chromosome 165 324 -293 1 1268 813 172 182 6 chr1 89552541 89552722 -107642710 - URR1B DNA MER1_type -11 214 2 1 1268 295 262 201 32 chr1 89552735 89552889 -107642543 - L1MC4 LINE L1 -1159 6883 6704 1 1268 396 0 0 0 chr1 89552902 89552946 -107642486 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1268 584 209 0 65 chr1 89553274 89553397 -107642035 + PB1D10 SINE Alu 1 115 -2 1 1268 254 250 211 32 chr1 89553691 89553786 -107641646 + PB1D7 SINE Alu 9 120 0 1 1268 367 297 9 43 chr1 89554532 89554648 -107640784 - ID_B1 SINE B4 -15 209 98 1 1268 237 279 16 126 chr1 89556150 89556277 -107639155 + LTR33 LTR ERVL 108 220 -295 1 1268 258 210 48 16 chr1 89556385 89556448 -107638984 + LTR33 LTR ERVL 450 514 -1 1 1268 405 241 71 111 chr1 89556593 89556719 -107638713 - MTE2a LTR MaLR -3 376 256 1 1268 860 189 0 13 chr1 89556720 89556870 -107638562 + B1_Mus1 SINE Alu 1 148 0 1 1268 374 212 29 48 chr1 89556910 89557014 -107638418 - MTE2a LTR MaLR -308 111 10 1 1268 237 283 0 0 chr1 89557836 89557889 -107637543 + ID4 SINE ID 5 57 -26 1 1268 243 230 88 44 chr1 89557918 89558009 -107637423 - MLT1A0 LTR MaLR -67 298 204 1 1268 324 0 0 0 chr1 89558092 89558128 -107637304 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1268 324 70 0 0 chr1 89559244 89559287 -107636145 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1268 1458 249 65 6 chr1 89559477 89559817 -107635615 - MTEb LTR MaLR 0 379 20 1 1268 248 311 135 35 chr1 89559671 89559841 -107635591 - MLT2B5 LTR ERVL -394 323 137 1 1268 617 263 0 17 chr1 89560103 89560223 -107635209 + PB1D7 SINE Alu 1 118 -2 1 1268 873 237 18 41 chr1 89560661 89560857 -107634575 + B3 SINE B2 2 193 -23 1 1268 586 214 16 33 chr1 89560857 89560978 -107634454 + PB1D9 SINE Alu 1 119 -1 1 1268 873 237 18 41 chr1 89560978 89561001 -107634431 + B3 SINE B2 194 216 0 1 1268 360 327 0 43 chr1 89561047 89561162 -107634270 + PB1D10 SINE Alu 1 110 -7 1 1268 241 350 90 0 chr1 89561185 89561285 -107634147 + PB1D10 SINE Alu 1 109 -8 1 1268 325 137 0 0 chr1 89561312 89561353 -107634079 + B1F2 SINE Alu 7 47 -102 1 1268 226 329 96 0 chr1 89561353 89561426 -107634006 + ID4_ SINE ID 1 80 -3 1 1268 241 303 14 43 chr1 89561459 89561528 -107633904 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 1 1268 21 0 0 0 chr1 89561528 89561549 -107633883 + AT_rich Low_complexity Low_complexity 1 21 0 1 1268 897 153 117 0 chr1 89562199 89562362 -107633070 + URR1A DNA MER1_type 27 208 -18 1 1268 267 337 77 40 chr1 89562409 89562595 -107632837 + MIR SINE MIR 29 226 -42 1 1268 350 294 11 32 chr1 89562716 89562811 -107632621 + PB1D10 SINE Alu 5 97 -20 1 1268 225 0 0 0 chr1 89564029 89564054 -107631378 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1268 413 285 15 57 chr1 89565478 89565629 -107629803 + PB1D10 SINE Alu 1 134 -14 1 1268 942 167 0 0 chr1 89565891 89566029 -107629403 + B1_Mur4 SINE Alu 1 138 -12 1 1268 222 37 0 0 chr1 89566031 89566058 -107629374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1268 374 132 13 0 chr1 89566816 89566892 -107628540 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1268 782 148 109 0 chr1 89567410 89567538 -107627894 + B1_Mur2 SINE Alu 1 142 -7 1 1268 625 236 207 0 chr1 89568677 89568851 -107626581 + B3 SINE B2 2 211 -5 1 1268 576 303 16 27 chr1 89568985 89569168 -107626264 - B3A SINE B2 -15 183 3 1 1268 374 303 9 0 chr1 89569202 89569311 -107626121 - PB1D10 SINE Alu -7 110 1 1 1268 542 219 111 12 chr1 89569322 89569484 -107625948 + B4A SINE B4 105 282 -10 1 1268 380 20 20 0 chr1 89569488 89569537 -107625895 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1268 405 0 0 0 chr1 89569537 89569581 -107625851 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1268 1389 55 60 6 chr1 89569591 89569773 -107625659 - B2_Mm2 SINE B2 -3 192 1 1 1268 1557 53 0 5 chr1 89570123 89570313 -107625119 + B2_Mm1t SINE B2 1 189 -4 1 1268 599 314 15 40 chr1 89570394 89570502 -107624930 + ID_B1 SINE B4 15 121 -103 1 1268 1747 166 165 50 chr1 89570502 89570902 -107624530 + RLTR41 LTR ERV1 1 446 0 1 1268 599 314 15 40 chr1 89570902 89570992 -107624440 + ID_B1 SINE B4 122 208 -16 1 1268 218 0 94 0 chr1 89571291 89571323 -107624109 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1268 300 147 207 22 chr1 89571561 89571664 -107623768 - B1_Mus2 SINE Alu -11 136 40 1 1268 441 205 0 0 chr1 89571664 89571781 -107623651 + CT-rich Low_complexity Low_complexity 2 118 0 1 1268 270 191 31 31 chr1 89571788 89571853 -107623579 - ID_B1 SINE B4 -79 145 81 1 1268 224 167 0 20 chr1 89571985 89572034 -107623398 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1268 768 266 49 91 chr1 89572093 89572378 -107623054 + B4A SINE B4 1 273 -19 1 1268 457 44 29 0 chr1 89572387 89572455 -107622977 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1268 186 43 0 0 chr1 89572455 89572477 -107622955 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1268 1100 41 6 93 chr1 89573420 89573581 -107621851 + B1_Mus2 SINE Alu 1 147 0 1 1268 473 93 27 0 chr1 89573581 89573656 -107621776 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 1 1268 403 195 52 0 chr1 89573742 89573819 -107621613 - B1F SINE Alu -68 81 1 1 1268 207 280 0 0 chr1 89573868 89573918 -107621514 + (TATG)n Simple_repeat Simple_repeat 4 53 0 1 1268 222 37 0 0 chr1 89573973 89574000 -107621432 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1268 357 276 169 8 chr1 89574026 89574150 -107621282 - RSINE1 SINE B4 -19 146 3 1 1268 697 325 8 84 chr1 89574150 89574399 -107621033 - B4A SINE B4 -62 230 1 1 1268 397 273 58 0 chr1 89574679 89574818 -107620614 + Lx6 LINE L1 7314 7460 0 1 1268 528 281 9 0 chr1 89575404 89575518 -107619914 + PB1 SINE Alu 11 125 -2 1 1268 257 235 138 23 chr1 89575712 89575799 -107619633 - MER34A LTR ERV1 -470 101 5 1 1268 501 17 0 0 chr1 89576165 89576223 -107619209 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1268 425 183 0 0 chr1 89576223 89576294 -107619138 - PB1D9 SINE Alu -49 71 1 1 1268 300 70 0 0 chr1 89576306 89576349 -107619083 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1268 775 268 19 0 chr1 89576355 89576512 -107618920 - B3A SINE B2 -38 160 1 1 1268 210 235 21 124 chr1 89577172 89577269 -107618163 + MIRb SINE MIR 39 125 -143 1 1268 210 371 48 40 chr1 89577278 89577490 -107617942 - L2a LINE L2 -11 3376 3136 1 1268 245 27 54 0 chr1 89578678 89578715 -107616717 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1268 1182 75 0 7 chr1 89578715 89578854 -107616578 - B1_Mus1 SINE Alu -9 139 1 1 1268 414 162 0 0 chr1 89578947 89579021 -107616411 + CT-rich Low_complexity Low_complexity 2 75 0 1 1268 1296 20 7 0 chr1 89579021 89579167 -107616265 - B1_Mm SINE Alu 0 147 1 1 1268 1406 105 5 0 chr1 89579169 89579360 -107616072 - B2_Mm1t SINE B2 0 193 2 1 1268 360 43 0 0 chr1 89579543 89579589 -107615843 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 1 1268 189 94 0 0 chr1 89579599 89579631 -107615801 + (TGAG)n Simple_repeat Simple_repeat 1 32 0 1 1268 501 256 42 8 chr1 89579633 89579751 -107615681 - RSINE1 SINE B4 -36 129 8 1 1268 2254 185 3 3 chr1 89580538 89580912 -107614520 - ORR1D1 LTR MaLR 0 374 1 1 1268 279 305 104 22 chr1 89581272 89581406 -107614026 + MIRm SINE MIR 36 180 -96 1 1268 386 238 157 10 chr1 89582049 89582151 -107613281 + MIRb SINE MIR 40 156 -112 1 1268 393 301 231 0 chr1 89582528 89582731 -107612701 - MER34 LTR ERV1 -292 250 1 1 1268 24 0 0 0 chr1 89583405 89583429 -107612003 + AT_rich Low_complexity Low_complexity 1 24 0 1 1268 282 276 11 33 chr1 89583501 89583591 -107611841 - ID_B1 SINE B4 0 224 137 1 1268 801 203 7 7 chr1 89583749 89583893 -107611539 + B1_Mur1 SINE Alu 2 145 -4 1 1268 200 143 0 23 chr1 89583894 89583937 -107611495 + GA-rich Low_complexity Low_complexity 1 42 0 1 1268 657 192 44 153 chr1 89584037 89584240 -107611192 - B3A SINE B2 -16 182 2 1 1268 240 111 0 0 chr1 89584377 89584413 -107611019 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1 1268 928 232 34 19 chr1 89584589 89584796 -107610636 + B3 SINE B2 4 213 -3 1 1268 595 169 30 68 chr1 89584816 89584949 -107610483 + B1_Mur2 SINE Alu 22 149 0 1 1268 1364 62 62 6 chr1 89584954 89585133 -107610299 - B2_Mm2 SINE B2 -6 189 1 1 1268 23 33 0 0 chr1 89585142 89585172 -107610260 + AT_rich Low_complexity Low_complexity 1 30 0 1 1268 256 170 82 0 chr1 89585206 89585280 -107610152 + PB1D10 SINE Alu 39 120 0 1 1268 323 202 101 0 chr1 89585662 89585741 -107609691 - ID_B1 SINE B4 -56 168 82 1 1268 525 206 70 4 chr1 89585742 89585908 -107609524 + L1MA5A LINE L1 5044 5255 -888 1 1268 358 291 85 23 chr1 89585911 89586087 -107609345 + L1MA5A LINE L1 5677 5863 -434 1 1268 236 263 104 49 chr1 89586232 89586396 -107609036 + HAL1 LINE L1 1683 1855 -652 1 1268 639 197 171 26 chr1 89586616 89586707 -107608725 - Lx8 LINE L1 -46 7427 7316 1 1268 2285 93 12 27 chr1 89586707 89587039 -107608393 + ORR1A2 LTR MaLR 1 327 0 2 1268 639 197 171 26 chr1 89587039 89587181 -107608251 - Lx8 LINE L1 -158 7315 7160 1 1268 1408 76 32 0 chr1 89587397 89587582 -107607850 + B2_Mm2 SINE B2 2 192 -3 2 1268 901 208 77 0 chr1 89587700 89587883 -107607549 - B3A SINE B2 -1 197 1 2 1268 2309 238 118 103 chr1 89588865 89589712 -107605720 - RMER13A LTR ERVK 0 860 1 2 1268 2168 116 7 73 chr1 89590205 89590579 -107604853 - ORR1A3 LTR MaLR 0 374 9 2 1268 26 0 0 0 chr1 89590714 89590740 -107604692 + AT_rich Low_complexity Low_complexity 1 26 0 2 1268 554 261 84 0 chr1 89590744 89590886 -107604546 - RSINE1 SINE B4 -11 154 1 2 1268 631 241 14 14 chr1 89591098 89591237 -107604195 - B1F1 SINE Alu -4 145 7 2 1268 1716 16 0 0 chr1 89591237 89591426 -107604006 - B2_Mm1a SINE B2 -3 190 2 2 1268 495 0 0 0 chr1 89591752 89591807 -107603625 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1268 204 200 0 0 chr1 89592331 89592376 -107603056 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 2 1268 1465 44 28 0 chr1 89592420 89592601 -107602831 - B2_Mm1t SINE B2 -6 187 2 2 1268 206 215 20 61 chr1 89592753 89592852 -107602580 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 2 1268 243 262 88 0 chr1 89592917 89592997 -107602435 + MER53 DNA hAT 96 182 -11 2 1268 21 0 0 0 chr1 89593229 89593250 -107602182 + GC_rich Low_complexity Low_complexity 1 21 0 2 1268 187 284 27 13 chr1 89593445 89593520 -107601912 + L2b LINE L2 3075 3150 -225 2 1268 205 169 138 117 chr1 89593562 89593656 -107601776 + L2a LINE L2 3291 3386 -40 2 1268 608 202 9 110 chr1 89594263 89594327 -107601105 + ID SINE ID 37 80 -144 2 1268 1038 32 0 0 chr1 89594327 89594452 -107600980 + B1_Mm SINE Alu 2 126 -21 2 1268 396 266 105 9 chr1 89594965 89595079 -107600353 - MER5A1 DNA MER1_type -36 130 6 2 1268 258 233 0 0 chr1 89595110 89595196 -107600236 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1268 855 264 43 34 chr1 89598217 89598425 -107597007 + ID_B1 SINE B4 1 210 -14 2 1268 480 18 0 0 chr1 89598569 89598626 -107596806 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 2 1268 1036 139 0 0 chr1 89598626 89598763 -107596669 - B1_Mur2 SINE Alu -12 137 1 2 1268 819 225 101 11 chr1 89598776 89598965 -107596467 - B3 SINE B2 -9 207 2 2 1268 467 17 17 0 chr1 89598988 89599048 -107596384 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1268 603 216 0 0 chr1 89599084 89599181 -107596251 + PB1D10 SINE Alu 3 99 -18 2 1268 1010 183 27 9 chr1 89599339 89599530 -107595902 + B3 SINE B2 23 216 0 2 1268 489 34 0 0 chr1 89600000 89600059 -107595373 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1268 624 27 0 0 chr1 89600059 89600134 -107595298 - B2_Mm2 SINE B2 -76 119 45 2 1268 237 299 13 0 chr1 89600199 89600276 -107595156 - MADE2 DNA Mariner -2 78 1 2 1268 804 209 28 22 chr1 89600333 89600514 -107594918 + B3A SINE B2 1 182 -16 2 1268 333 0 0 0 chr1 89600545 89600582 -107594850 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1268 215 316 32 57 chr1 89601570 89601694 -107593738 - L2 LINE L2 -2985 434 314 2 1268 1137 73 0 0 chr1 89601728 89601864 -107593568 + B1_Mus1 SINE Alu 4 139 -9 2 1268 416 0 0 59 chr1 89601864 89601932 -107593500 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1268 363 274 68 73 chr1 89601979 89602044 -107593388 - MLT1H LTR MaLR 0 549 488 2 1268 1131 59 136 40 chr1 89602044 89602221 -107593211 + B2_Mm2 SINE B2 2 195 0 2 1268 363 275 90 80 chr1 89602221 89602424 -107593008 - MLT1H LTR MaLR -62 529 316 2 1268 505 267 14 62 chr1 89603712 89603856 -107591576 + ID_B1 SINE B4 88 224 0 2 1268 244 360 73 49 chr1 89604056 89604077 -107591355 + B4 SINE B4 68 149 -143 2 1268 468 289 24 47 chr1 89604077 89604204 -107591228 + B1F SINE Alu 5 128 -21 2 1268 244 360 73 49 chr1 89604204 89604226 -107591206 + B4 SINE B4 150 246 -46 2 1268 231 245 94 10 chr1 89604315 89604411 -107591021 - MIR3 SINE MIR -141 121 15 2 1268 558 0 0 0 chr1 89604878 89604940 -107590492 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1268 211 337 33 55 chr1 89606814 89606833 -107588599 - B3A SINE B2 -102 96 8 2 1268 291 333 0 0 chr1 89606833 89606905 -107588527 - ID4_ SINE ID -4 79 8 2 1268 1040 111 28 28 chr1 89607369 89607545 -107587887 - B2_Mm2 SINE B2 -18 177 2 2 1268 539 306 77 0 chr1 89607943 89608126 -107587306 - MIRb SINE MIR -48 220 24 2 1268 479 199 10 68 chr1 89608885 89608992 -107586440 + PB1D10 SINE Alu 10 115 -2 2 1268 391 270 100 0 chr1 89608993 89609093 -107586339 - MIRb SINE MIR -68 200 91 2 1268 257 357 24 67 chr1 89609546 89609711 -107585721 - MER117 DNA MER1_type -38 159 2 2 1268 1062 239 55 119 chr1 89610299 89610702 -107584730 - MTE2a LTR MaLR -2 377 1 2 1268 770 184 28 0 chr1 89610705 89610846 -107584586 + B1_Mur2 SINE Alu 5 149 0 2 1268 1354 95 0 11 chr1 89612282 89612463 -107582969 + B2_Mm2 SINE B2 1 179 -16 2 1268 316 307 11 11 chr1 89613306 89613395 -107582037 + MER81 DNA AcHobo 12 100 -14 2 1268 774 245 0 0 chr1 89613786 89613933 -107581499 - B3 SINE B2 -68 148 2 2 1268 580 203 17 17 chr1 89613928 89614048 -107581384 + PB1D9 SINE Alu 1 120 0 2 1268 409 289 83 26 chr1 89614054 89614210 -107581222 - L1MB5 LINE L1 -12 6162 5998 2 1268 198 275 0 0 chr1 89614870 89614939 -107580493 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1268 402 284 0 10 chr1 89615249 89615345 -107580087 + PB1D10 SINE Alu 3 97 -20 2 1268 257 333 0 24 chr1 89615365 89615448 -107579984 + ID4_ SINE ID 2 82 -1 2 1268 252 281 70 0 chr1 89615489 89615546 -107579886 - ID2 SINE ID -2 81 21 2 1268 238 257 56 56 chr1 89615698 89615805 -107579627 + MIR SINE MIR 121 227 -35 2 1268 31 0 0 0 chr1 89616243 89616274 -107579158 + AT_rich Low_complexity Low_complexity 1 31 0 2 1268 456 294 51 97 chr1 89619366 89619659 -107575773 + B4 SINE B4 36 279 -13 2 1268 225 108 0 0 chr1 89619659 89619696 -107575736 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1268 614 13 13 0 chr1 89619747 89619822 -107575610 + (GGA)n Simple_repeat Simple_repeat 3 78 0 2 1268 2191 152 11 17 chr1 89620044 89620400 -107575032 + ORR1B1 LTR MaLR 41 394 0 2 1268 362 367 70 0 chr1 89621602 89621730 -107573702 + B1F2 SINE Alu 2 138 -11 2 1268 192 200 0 0 chr1 89621742 89621782 -107573650 + (ATG)n Simple_repeat Simple_repeat 3 42 0 2 1268 2051 159 39 11 chr1 89621948 89622304 -107573128 + ORR1C2 LTR MaLR 1 366 -18 2 1268 348 24 0 0 chr1 89622683 89622724 -107572708 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1268 390 222 33 22 chr1 89622725 89622817 -107572615 + RLTR23 LTR ERV1 338 430 0 2 1268 225 300 163 22 chr1 89622940 89623032 -107572400 - MLT1A1 LTR MaLR -45 363 259 2 1268 2023 156 71 0 chr1 89623059 89623239 -107572193 - ORR1B2 LTR MaLR -4 363 170 2 1268 858 71 0 0 chr1 89623239 89623366 -107572066 + (GA)n Simple_repeat Simple_repeat 2 128 0 2 1268 2023 156 71 0 chr1 89623366 89623524 -107571908 - ORR1B2 LTR MaLR -198 169 2 2 1268 390 296 11 0 chr1 89623722 89623810 -107571622 + RSINE1 SINE B4 3 91 -74 2 1268 540 120 0 0 chr1 89623825 89623925 -107571507 + (CA)n Simple_repeat Simple_repeat 2 101 0 2 1268 387 298 150 61 chr1 89623941 89624095 -107571337 + L1MEf LINE L1 1411 1568 -4632 2 1268 730 186 7 20 chr1 89624095 89624243 -107571189 + B1_Mur3 SINE Alu 2 147 -2 2 1268 387 298 150 61 chr1 89624243 89624449 -107570983 + L1MEf LINE L1 1569 1803 -4397 2 1268 689 255 164 48 chr1 89624469 89624737 -107570695 + MTEa LTR MaLR 1 299 -80 2 1268 321 327 100 56 chr1 89624961 89625230 -107570202 - LTR85b LTR Gypsy? -186 598 318 2 1268 393 75 0 0 chr1 89625371 89625424 -107570008 + (CTATA)n Simple_repeat Simple_repeat 2 54 0 2 1268 275 283 62 120 chr1 89625798 89625958 -107569474 - MLT1H2 LTR MaLR 0 489 336 2 1268 186 43 0 0 chr1 89625958 89625981 -107569451 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1268 275 283 62 120 chr1 89625981 89626029 -107569403 - MLT1H2 LTR MaLR -154 335 293 2 1268 411 143 21 21 chr1 89626074 89626167 -107569265 + GA-rich Low_complexity Low_complexity 6 98 0 2 1268 256 350 92 84 chr1 89626275 89626537 -107568895 - LTR33A_ LTR ERVL -267 264 1 2 1268 358 288 63 28 chr1 89627034 89627177 -107568255 + B1F SINE Alu 1 148 -1 2 1268 264 250 50 0 chr1 89627187 89627247 -107568185 + ID4 SINE ID 1 63 -20 2 1268 203 315 49 84 chr1 89627262 89627405 -107568027 - MER5A DNA MER1_type -13 176 28 2 1268 27 29 0 0 chr1 89627432 89627466 -107567966 + AT_rich Low_complexity Low_complexity 1 34 0 2 1268 878 92 8 0 chr1 89627606 89627736 -107567696 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2 1268 24 0 0 0 chr1 89627748 89627772 -107567660 + AT_rich Low_complexity Low_complexity 1 24 0 2 1268 362 146 0 0 chr1 89628040 89628095 -107567337 + L1Md_F2 LINE L1 5532 5586 -297 2 1268 8421 39 4 0 chr1 89628096 89629125 -107566307 + L1Md_F2 LINE L1 5588 6582 0 2 1268 237 83 0 0 chr1 89629508 89629544 -107565888 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1268 436 282 79 56 chr1 89629566 89629833 -107565599 - B4A SINE B4 -18 274 2 2 1268 1049 162 207 0 chr1 89631130 89631309 -107564123 - B3 SINE B2 0 216 1 2 1268 1393 266 40 14 chr1 89631316 89631711 -107563721 + MTE2b LTR MaLR 4 375 -4 2 1268 287 281 133 50 chr1 89631849 89631914 -107563518 - ID_B1 SINE B4 -83 141 12 2 1268 300 180 7 0 chr1 89631914 89631969 -107563463 - ID4 SINE ID -84 68 12 2 1268 721 237 138 26 chr1 89631986 89632181 -107563251 - ID_B1 SINE B4 -6 218 2 2 1268 648 245 45 45 chr1 89632251 89632405 -107563027 - RSINE1 SINE B4 -6 159 6 3 1268 639 71 0 0 chr1 89632459 89632544 -107562888 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1268 246 324 0 0 chr1 89632662 89632733 -107562699 + MLT1L LTR MaLR 14 84 -526 3 1268 226 339 80 90 chr1 89632869 89633158 -107562274 - MLT1G1 LTR MaLR -188 391 106 3 1268 25 0 0 0 chr1 89633190 89633215 -107562217 + GC_rich Low_complexity Low_complexity 1 25 0 3 1268 386 247 37 0 chr1 89633300 89633381 -107562051 - RSINE1 SINE B4 -79 86 3 3 1268 1781 249 75 29 chr1 89634410 89634914 -107560518 + Lx7 LINE L1 6793 7320 -376 3 1268 306 0 0 0 chr1 89634914 89634948 -107560484 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1268 1781 280 54 29 chr1 89634948 89635124 -107560308 + Lx7 LINE L1 7321 7366 -330 3 1268 2371 196 113 32 chr1 89635136 89635186 -107560246 - RMER1C Other Other 0 1342 1296 3 1268 2294 70 55 0 chr1 89635186 89635498 -107559934 + ORR1A4 LTR MaLR 1 329 0 3 1268 2371 204 126 28 chr1 89635498 89636124 -107559308 - RMER1C Other Other -47 1295 44 3 1268 789 197 15 0 chr1 89636174 89636311 -107559121 - B1_Mur3 SINE Alu -6 143 5 3 1268 628 281 12 42 chr1 89636609 89636776 -107558656 - MTEa LTR MaLR -204 175 14 3 1268 603 295 52 114 chr1 89636841 89637147 -107558285 - B4A SINE B4 -4 288 2 3 1268 4512 14 0 0 chr1 89638089 89638582 -107556850 - MT2_Mm LTR ERVL 0 493 1 3 1268 319 0 0 0 chr1 89638582 89638620 -107556812 - MERVL-int LTR ERVL 0 5485 5448 3 1268 375 179 46 35 chr1 89638620 89638707 -107556725 - ORR1A3-int LTR MaLR -1323 640 553 3 1268 40095 17 9 0 chr1 89638707 89643137 -107552295 - MERVL-int LTR ERVL -125 5360 890 3 1268 6467 11 0 0 chr1 89643132 89643841 -107551591 - MERVL-int LTR ERVL -4776 709 1 3 1268 4512 14 0 0 chr1 89643841 89644334 -107551098 - MT2_Mm LTR ERVL 0 493 1 3 1268 1179 198 10 0 chr1 89644772 89644979 -107550453 + B3 SINE B2 1 209 -7 3 1268 386 215 63 21 chr1 89645122 89645217 -107550215 + PB1D7 SINE Alu 20 118 -2 3 1268 399 281 91 0 chr1 89645618 89645739 -107549693 + B1F2 SINE Alu 2 133 -16 3 1268 208 143 0 0 chr1 89645757 89645792 -107549640 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1268 778 213 75 0 chr1 89646463 89646651 -107548781 + RMER15 LTR ERVL 374 575 0 3 1268 271 311 53 68 chr1 89646721 89646911 -107548521 - LTR84b LTR ERVL -492 269 83 3 1268 751 221 21 0 chr1 89647156 89647296 -107548136 + B1_Mur2 SINE Alu 7 149 0 3 1268 959 129 30 12 chr1 89647947 89648112 -107547320 - Lx3B LINE L1 -1 6972 6805 3 1268 572 296 24 36 chr1 89648233 89648398 -107547034 - RSINE1 SINE B4 0 165 3 3 1268 3015 86 30 0 chr1 89648518 89648913 -107546519 - MTB_Mm LTR MaLR 0 407 1 3 1268 501 162 150 10 chr1 89649405 89649505 -107545927 - B1_Mur2 SINE Alu -1 148 35 3 1268 483 262 120 18 chr1 89649477 89649644 -107545788 - MTD LTR MaLR -233 186 3 3 1268 265 271 56 106 chr1 89650165 89650326 -107545106 + RLTR41 LTR ERV1 251 403 -43 3 1268 7647 65 26 1 chr1 89650373 89651700 -107543732 + L1_Mus1 LINE L1 5217 6638 0 3 1268 186 103 0 0 chr1 89651734 89651763 -107543669 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1268 259 284 31 0 chr1 89652223 89652308 -107543124 - MIR SINE MIR -101 161 82 3 1268 261 0 0 0 chr1 89652338 89652367 -107543065 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1269 275 314 103 41 chr1 89653629 89653775 -107541657 + MER5B DNA MER1_type 16 170 -8 3 1269 212 216 39 19 chr1 89654155 89654207 -107541225 + MIRc SINE MIR 126 178 -90 3 1269 222 217 22 0 chr1 89655494 89655540 -107539892 - ID4 SINE ID -25 58 12 3 1269 288 289 26 0 chr1 89655532 89655608 -107539824 + LTR48 LTR ERV1 220 297 -490 3 1269 753 129 16 24 chr1 89656048 89656175 -107539257 + B1_Mur3 SINE Alu 19 144 -5 3 1269 1109 64 7 0 chr1 89657127 89657268 -107538164 + B1_Mus2 SINE Alu 6 147 0 3 1269 195 42 0 0 chr1 89657269 89657293 -107538139 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1269 648 212 91 0 chr1 89657299 89657431 -107538001 + B1_Mur1 SINE Alu 1 144 -5 3 1269 1168 68 0 0 chr1 89657890 89658037 -107537395 + B1_Mus2 SINE Alu 1 147 0 3 1269 251 85 0 21 chr1 89658038 89658086 -107537346 + (TAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1269 725 140 0 0 chr1 89658439 89658546 -107536886 - B1_Mus1 SINE Alu -6 142 36 3 1269 305 315 58 71 chr1 89658478 89658584 -107536848 - MT2B LTR ERVL -344 257 154 3 1269 1315 248 140 0 chr1 89658584 89658935 -107536497 - MTD LTR MaLR 0 419 20 3 1269 497 190 174 0 chr1 89659950 89660071 -107535361 - B1_Mur2 SINE Alu -3 146 5 3 1269 1007 53 260 0 chr1 89661613 89661763 -107533669 - B2_Mm2 SINE B2 -5 190 2 3 1269 476 264 81 16 chr1 89664719 89664842 -107530590 - RSINE1 SINE B4 -17 148 18 3 1269 399 276 197 31 chr1 89665274 89665401 -107530031 - B1_Mur3 SINE Alu 0 149 2 3 1269 931 70 148 0 chr1 89665814 89665942 -107529490 + B1_Mus1 SINE Alu 2 148 0 3 1269 252 175 0 0 chr1 89665944 89666007 -107529425 + A-rich Low_complexity Low_complexity 1 63 0 3 1269 185 93 0 65 chr1 89666401 89666447 -107528985 + T-rich Low_complexity Low_complexity 1 43 0 3 1269 1229 35 7 0 chr1 89666447 89666592 -107528840 - B1_Mm SINE Alu 0 147 2 3 1269 500 253 31 57 chr1 89666769 89666928 -107528504 + RSINE1 SINE B4 3 157 -8 3 1269 510 263 90 34 chr1 89667672 89667849 -107527583 - B4A SINE B4 -104 188 2 3 1269 355 216 225 42 chr1 89668809 89668977 -107526455 + B3 SINE B2 10 197 -19 3 1269 3549 32 0 128 chr1 89669182 89669682 -107525750 - RLTR10C LTR ERVK 0 436 1 3 1269 1130 197 9 27 chr1 89672811 89673030 -107522402 + B3 SINE B2 1 215 -1 3 1269 395 252 8 42 chr1 89674123 89674243 -107521189 + PB1D10 SINE Alu 2 117 0 3 1269 411 229 71 64 chr1 89674468 89674608 -107520824 + B4A SINE B4 1 141 -151 3 1269 261 0 0 0 chr1 89674706 89674735 -107520697 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1269 722 267 0 13 chr1 89674824 89674976 -107520456 + B3A SINE B2 1 150 -48 3 1269 401 322 0 11 chr1 89675183 89675277 -107520155 + B1F1 SINE Alu 8 100 -49 3 1269 227 246 0 81 chr1 89676147 89676209 -107519223 + BC1_Mm scRNA scRNA 4 60 -92 3 1269 242 241 86 25 chr1 89676805 89676886 -107518546 - PB1D9 SINE Alu 0 120 35 3 1269 611 193 18 0 chr1 89677071 89677180 -107518252 + RSINE1 SINE B4 4 114 -51 3 1269 308 301 0 0 chr1 89677674 89677747 -107517685 - ID4 SINE ID -1 82 10 3 1269 433 274 104 0 chr1 89679493 89679628 -107515804 - B1F2 SINE Alu 0 149 1 3 1269 522 203 48 56 chr1 89680091 89680216 -107515216 + B1_Mur4 SINE Alu 27 150 0 3 1269 358 229 29 86 chr1 89680429 89680534 -107514898 + B1_Mur2 SINE Alu 51 149 0 3 1269 315 243 68 0 chr1 89680541 89680615 -107514817 + B4 SINE B4 5 83 -209 3 1269 593 59 0 23 chr1 89680671 89680758 -107514674 + (TAG)n Simple_repeat Simple_repeat 2 86 0 3 1269 261 209 308 0 chr1 89680941 89681032 -107514400 + PB1D9 SINE Alu 1 119 -1 3 1269 576 29 0 0 chr1 89681040 89681110 -107514322 + (GGGA)n Simple_repeat Simple_repeat 3 72 0 3 1269 289 211 0 17 chr1 89681552 89681610 -107513822 + B4A SINE B4 86 142 -150 3 1269 312 219 109 0 chr1 89681735 89681799 -107513633 - ID4 SINE ID -5 78 8 3 1269 238 299 118 15 chr1 89681798 89681866 -107513566 - PB1 SINE Alu -15 112 27 3 1269 1032 85 43 0 chr1 89684519 89684660 -107510772 - B1_Mus2 SINE Alu 0 147 1 3 1269 3526 71 32 0 chr1 89684660 89685156 -107510276 + MusHAL1 LINE L1 1575 2086 -626 3 1269 22 0 0 0 chr1 89685734 89685756 -107509676 + AT_rich Low_complexity Low_complexity 1 22 0 3 1269 322 295 188 30 chr1 89686628 89686862 -107508570 - B4A SINE B4 -18 274 4 3 1269 22 0 0 0 chr1 89689456 89689478 -107505954 + AT_rich Low_complexity Low_complexity 1 22 0 3 1269 548 258 135 25 chr1 89690036 89690338 -107505094 + L1_Rod LINE L1 5501 5821 -26 3 1269 545 264 80 0 chr1 89690614 89690739 -107504693 - RSINE1 SINE B4 -21 144 10 3 1269 1287 93 38 11 chr1 89690787 89690972 -107504460 + B2_Mm2 SINE B2 3 192 -3 3 1269 392 200 89 10 chr1 89691622 89691723 -107503709 - ID_B1 SINE B4 -3 221 113 3 1269 493 261 88 22 chr1 89691842 89691979 -107503453 - RSINE1 SINE B4 -17 148 3 3 1269 1319 87 21 21 chr1 89692129 89692318 -107503114 - B2_Mm2 SINE B2 -5 190 2 3 1269 1675 216 182 18 chr1 89692339 89692877 -107502555 + Lx9 LINE L1 7012 7638 -6 3 1269 413 329 20 0 chr1 89692913 89693059 -107502373 + RSINE1 SINE B4 2 150 -15 3 1269 213 39 0 0 chr1 89693366 89693392 -107502040 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1269 316 253 125 11 chr1 89693690 89693778 -107501654 + PB1D10 SINE Alu 1 98 -19 3 1269 966 197 24 42 chr1 89694037 89694249 -107501183 - B3 SINE B2 -5 211 4 3 1269 494 182 108 29 chr1 89694613 89694630 -107500802 - B3A SINE B2 -88 110 86 3 1269 231 103 0 0 chr1 89694630 89694669 -107500763 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1269 494 182 108 29 chr1 89694669 89694753 -107500679 - B3A SINE B2 -113 85 1 3 1269 361 264 77 0 chr1 89694773 89694864 -107500568 - B1F SINE Alu -51 98 1 3 1269 521 275 18 36 chr1 89695702 89695868 -107499564 - RSINE1 SINE B4 0 165 3 3 1269 217 197 338 29 chr1 89695929 89695997 -107499435 - B1_Mm SINE Alu -55 92 4 3 1269 702 240 76 0 chr1 89696051 89696222 -107499210 - B3 SINE B2 0 216 33 3 1269 295 105 32 42 chr1 89696263 89696358 -107499074 - B2_Mm2 SINE B2 -3 192 47 3 1269 1218 100 12 0 chr1 89696378 89696548 -107498884 - B2_Mm1t SINE B2 -20 173 2 3 1269 601 132 293 17 chr1 89696580 89696696 -107498736 - B1_Mur1 SINE Alu 0 149 2 4 1269 220 213 0 16 chr1 89696704 89696751 -107498681 + T-rich Low_complexity Low_complexity 17 62 0 4 1269 1166 181 34 19 chr1 89696751 89696959 -107498473 - B3 SINE B2 -5 211 1 4 1269 220 213 0 16 chr1 89696959 89696973 -107498459 + T-rich Low_complexity Low_complexity 3 16 0 4 1269 798 245 120 0 chr1 89697469 89697677 -107497755 - MER74A LTR ERVL -2 556 324 4 1269 327 279 13 0 chr1 89697783 89697862 -107497570 + PB1D10 SINE Alu 7 86 -31 4 1269 887 170 152 11 chr1 89698272 89698456 -107496976 + B3 SINE B2 1 210 -6 4 1269 732 249 46 20 chr1 89698479 89698676 -107496756 + B3 SINE B2 3 204 -12 4 1269 704 201 28 7 chr1 89698711 89698856 -107496576 + B1_Mur1 SINE Alu 2 149 0 4 1269 257 169 17 0 chr1 89699242 89699301 -107496131 + (CAA)n Simple_repeat Simple_repeat 1 60 0 4 1269 192 97 0 0 chr1 89700172 89700203 -107495229 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1269 274 229 33 0 chr1 89700921 89700937 -107494495 + B4 SINE B4 68 85 -207 4 1269 486 129 153 0 chr1 89700937 89701022 -107494410 + B1F1 SINE Alu 1 98 -51 4 1269 527 206 24 31 chr1 89701069 89701219 -107494213 - B1_Mm SINE Alu 0 149 10 4 1269 672 216 0 0 chr1 89701325 89701436 -107493996 + B1_Mur1 SINE Alu 2 112 -37 4 1269 462 287 48 24 chr1 89701326 89701451 -107493981 + ID_B1 SINE B4 84 211 -13 4 1269 807 212 96 0 chr1 89701468 89701614 -107493818 + B3A SINE B2 1 160 -38 4 1269 342 0 0 0 chr1 89701623 89701661 -107493771 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1269 306 268 28 14 chr1 89702665 89702737 -107492695 - ID4_ SINE ID 0 83 11 4 1269 266 356 81 15 chr1 89702712 89702909 -107492523 + RMER12 LTR ERVK 749 958 -364 4 1269 420 248 99 0 chr1 89702937 89703038 -107492394 - PB1 SINE Alu -2 125 15 4 1269 387 335 52 36 chr1 89703289 89703481 -107491951 - MLT1L LTR MaLR -287 323 129 4 1269 276 270 157 0 chr1 89703481 89703570 -107491862 + PB1D10 SINE Alu 1 103 -14 4 1269 1026 218 29 10 chr1 89703606 89703810 -107491622 + B3 SINE B2 4 211 -5 4 1269 467 243 9 0 chr1 89704222 89704329 -107491103 + PB1D9 SINE Alu 1 108 -12 4 1269 384 191 48 113 chr1 89704436 89704560 -107490872 + B1F SINE Alu 31 146 -3 4 1269 183 42 0 0 chr1 89705584 89705608 -107489824 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1269 1001 216 23 27 chr1 89705768 89705901 -107489531 + URR1B DNA MER1_type 8 145 -80 4 1269 1606 32 0 11 chr1 89705901 89706089 -107489343 + B2_Mm1a SINE B2 1 186 -7 4 1269 1001 216 23 27 chr1 89706089 89706174 -107489258 + URR1B DNA MER1_type 146 224 -1 4 1269 361 191 88 0 chr1 89706733 89706801 -107488631 + ID4_ SINE ID 2 75 -8 4 1269 290 188 0 0 chr1 89707026 89707074 -107488358 + B1_Mus2 SINE Alu 1 48 -99 4 1269 932 237 16 0 chr1 89707073 89707259 -107488173 + B3 SINE B2 23 211 -5 4 1269 978 96 30 0 chr1 89707285 89707420 -107488012 + B1_Mur4 SINE Alu 1 139 -11 4 1269 182 37 37 0 chr1 89707420 89707447 -107487985 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1269 267 31 0 0 chr1 89707526 89707558 -107487874 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1269 615 219 8 8 chr1 89707558 89707682 -107487750 - RSINE1 SINE B4 -40 125 2 4 1269 22 0 0 0 chr1 89707689 89707711 -107487721 + AT_rich Low_complexity Low_complexity 1 22 0 4 1269 485 208 37 19 chr1 89707793 89707901 -107487531 + MTE2b LTR MaLR 196 305 -74 4 1269 568 308 76 45 chr1 89708059 89708413 -107487019 + L1MD1 LINE L1 5461 5825 -417 4 1269 439 202 1 20 chr1 89708414 89708514 -107486918 + PB1D10 SINE Alu 4 100 -17 4 1269 352 259 63 6 chr1 89708601 89708727 -107486705 + L1MD1 LINE L1 5870 6011 -1984 4 1269 375 175 17 5 chr1 89709018 89709089 -107486343 + RSINE1 SINE B4 17 86 -206 4 1269 830 232 24 15 chr1 89709104 89709310 -107486122 - B3 SINE B2 -5 211 4 4 1269 475 230 0 0 chr1 89709370 89709457 -107485975 + ID_B1 SINE B4 127 213 -11 4 1269 292 300 43 43 chr1 89709457 89709485 -107485947 - YREP_Mm Unknown Unknown -1541 271 157 4 1269 477 303 52 7 chr1 89710780 89710933 -107484499 - RSINE1 SINE B4 -5 160 1 4 1269 863 172 28 0 chr1 89712038 89712183 -107483249 + B1_Mur4 SINE Alu 1 149 -1 4 1269 624 296 46 34 chr1 89712214 89712542 -107482890 + L1MB4 LINE L1 5842 6173 -7 4 1269 514 276 22 0 chr1 89712576 89712710 -107482722 + B1_Mur3 SINE Alu 2 138 -11 4 1269 246 62 0 0 chr1 89712710 89712742 -107482690 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1269 740 163 78 0 chr1 89712823 89712952 -107482480 + B1_Mur4 SINE Alu 2 140 -10 4 1269 382 230 177 0 chr1 89713001 89713109 -107482323 - B1_Mur2 SINE Alu -18 129 1 4 1269 963 230 35 15 chr1 89713224 89713423 -107482009 + B3 SINE B2 2 204 -12 4 1269 293 279 0 25 chr1 89713471 89713552 -107481880 + PB1D10 SINE Alu 27 105 -12 4 1269 255 210 16 16 chr1 89713666 89713729 -107481703 + L1M5 LINE L1 5710 5772 -352 4 1269 290 219 247 10 chr1 89714195 89714292 -107481140 - PB1D7 SINE Alu 0 120 1 4 1269 204 127 36 18 chr1 89715560 89715616 -107479816 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 4 1269 763 126 8 32 chr1 89716550 89716673 -107478759 + MTC LTR MaLR 1 120 -301 4 1269 1410 52 15 25 chr1 89716668 89716694 -107478738 - B2_Mm2 SINE B2 0 195 170 4 1269 1019 110 14 0 chr1 89716694 89716840 -107478592 - B1_Mus1 SINE Alu 0 148 1 4 1269 1410 52 15 25 chr1 89716840 89717009 -107478423 - B2_Mm2 SINE B2 -26 169 2 4 1269 1975 116 0 81 chr1 89717011 89717109 -107478323 + MTC LTR MaLR 113 210 -211 4 1269 1518 58 21 0 chr1 89717109 89717299 -107478133 + B2_Mm2 SINE B2 2 195 0 4 1269 1975 116 0 81 chr1 89717299 89717520 -107477912 + MTC LTR MaLR 211 406 -15 4 1269 245 75 0 24 chr1 89718252 89718293 -107477139 + (TTTTA)n Simple_repeat Simple_repeat 5 44 0 4 1269 445 262 18 18 chr1 89718296 89718405 -107477027 - PB1D7 SINE Alu -4 116 8 4 1269 307 351 29 12 chr1 89718422 89718595 -107476837 - L1MB4 LINE L1 0 6180 6005 4 1269 586 236 108 11 chr1 89720606 89720782 -107474650 - MTD LTR MaLR -226 193 1 4 1269 882 158 14 14 chr1 89721246 89721394 -107474038 - B1_Mus1 SINE Alu 0 148 1 4 1269 1612 31 0 15 chr1 89721423 89721618 -107473814 + B2_Mm1a SINE B2 2 193 0 4 1269 491 261 247 6 chr1 89721653 89721819 -107473613 + ID_B1 SINE B4 17 222 -2 4 1269 533 234 220 12 chr1 89721984 89722157 -107473275 - B3 SINE B2 -7 209 1 4 1269 272 308 87 0 chr1 89722436 89722540 -107472892 + PB1D7 SINE Alu 8 120 0 4 1269 320 217 71 12 chr1 89722778 89722862 -107472570 + ID_B1 SINE B4 130 218 -6 4 1269 273 279 0 0 chr1 89722862 89722930 -107472502 + ID SINE ID 4 71 -153 4 1269 343 293 125 103 chr1 89723019 89723331 -107472101 + MLT1A0 LTR MaLR 1 319 -46 4 1269 248 208 0 36 chr1 89723563 89723618 -107471814 - MLT1A0 LTR MaLR -12 362 310 4 1269 230 284 54 0 chr1 89723621 89723695 -107471737 - PB1D7 SINE Alu -42 78 1 4 1269 260 303 463 7 chr1 89723706 89723853 -107471579 - MLT1A0 LTR MaLR -89 285 72 4 1269 501 291 42 14 chr1 89723871 89724014 -107471418 + RSINE1 SINE B4 3 149 -16 4 1269 1213 119 23 0 chr1 89724158 89724335 -107471097 + B2_Mm2 SINE B2 1 181 -14 4 1269 459 62 7 10 chr1 89724363 89724470 -107470962 + B2_Mm2 SINE B2 47 189 -6 4 1269 494 214 45 0 chr1 89724480 89724592 -107470840 + PB1D10 SINE Alu 1 117 0 4 1269 594 146 0 0 chr1 89725404 89725514 -107469918 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1269 216 0 0 0 chr1 89725514 89725538 -107469894 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1269 211 189 0 36 chr1 89725539 89725594 -107469838 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 4 1269 459 0 0 0 chr1 89725683 89725734 -107469698 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1269 388 305 52 83 chr1 89725997 89726190 -107469242 - MTEa LTR MaLR -161 218 32 4 1269 486 0 0 0 chr1 89726445 89726499 -107468933 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1269 768 136 93 0 chr1 89726944 89727062 -107468370 + B1_Mur4 SINE Alu 1 129 -21 4 1269 261 0 130 0 chr1 89727063 89727132 -107468300 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1269 758 105 46 11 chr1 89727134 89727308 -107468124 + GA-rich Low_complexity Low_complexity 1 180 0 4 1269 492 248 9 62 chr1 89727455 89727567 -107467865 - B1_Mur2 SINE Alu -14 106 1 4 1269 303 282 12 37 chr1 89727502 89727583 -107467849 - B4 SINE B4 -142 150 72 4 1269 609 239 0 0 chr1 89727606 89727715 -107467717 - PB1D10 SINE Alu 0 117 9 4 1269 470 17 0 17 chr1 89727814 89727874 -107467558 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1269 793 234 7 7 chr1 89727877 89728032 -107467400 - B3 SINE B2 -56 160 6 4 1269 480 282 77 16 chr1 89728020 89728228 -107467204 - B4A SINE B4 -59 233 2 4 1269 495 262 54 41 chr1 89728733 89728880 -107466552 + MIRb SINE MIR 88 236 -32 4 1269 3105 67 102 0 chr1 89729467 89729898 -107465534 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1269 1013 211 50 0 chr1 89731679 89731878 -107463554 + ID_B1 SINE B4 16 224 0 4 1269 537 16 0 0 chr1 89732013 89732075 -107463357 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 4 1269 272 241 22 67 chr1 89732178 89732267 -107463165 - B3 SINE B2 -5 211 127 4 1269 693 204 7 42 chr1 89732227 89732370 -107463062 + B1_Mur1 SINE Alu 12 149 0 4 1269 274 214 0 67 chr1 89732698 89732773 -107462659 - B1_Mur2 SINE Alu -1 148 79 4 1269 26 0 0 0 chr1 89732830 89732856 -107462576 + AT_rich Low_complexity Low_complexity 1 26 0 5 1269 269 234 128 13 chr1 89732926 89733004 -107462428 + PB1D9 SINE Alu 33 119 -1 5 1269 225 342 0 25 chr1 89733086 89733167 -107462265 + MER2B DNA MER2_type 173 251 -85 5 1269 919 78 66 0 chr1 89733304 89733470 -107461962 + (TCTCCC)n Simple_repeat Simple_repeat 1 177 0 5 1269 248 115 58 0 chr1 89733470 89733522 -107461910 + CT-rich Low_complexity Low_complexity 3 57 0 5 1269 870 256 133 18 chr1 89734035 89734365 -107461067 - RMER5 LTR ERV1 -126 408 41 5 1269 687 25 0 0 chr1 89734397 89734478 -107460954 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 5 1269 312 250 202 8 chr1 89734642 89734771 -107460661 + RMER5 LTR ERV1 28 181 -353 5 1269 1259 65 6 0 chr1 89734925 89735095 -107460337 + (TTCCC)n Simple_repeat Simple_repeat 2 172 0 5 1269 703 101 42 8 chr1 89735115 89735235 -107460197 - Lx4A LINE L1 0 7058 6935 5 1269 1174 75 0 0 chr1 89735705 89735851 -107459581 + B1_Mus2 SINE Alu 2 147 0 5 1269 218 26 0 116 chr1 89735853 89735939 -107459493 + (CAAAAA)n Simple_repeat Simple_repeat 1 76 0 5 1269 1217 82 29 17 chr1 89735959 89736132 -107459300 + B2_Mm2 SINE B2 3 177 -18 5 1269 777 201 125 16 chr1 89736198 89736390 -107459042 - B3 SINE B2 -3 213 1 5 1269 633 292 0 0 chr1 89736452 89736594 -107458838 - B3A SINE B2 -4 194 53 5 1269 2107 121 42 31 chr1 89736594 89736951 -107458481 - ORR1B1 LTR MaLR 0 394 34 5 1269 340 143 0 0 chr1 89736950 89737006 -107458426 - B3 SINE B2 -160 56 1 5 1269 279 0 0 0 chr1 89737275 89737306 -107458126 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1269 422 259 64 9 chr1 89738078 89738187 -107457245 + PB1D10 SINE Alu 1 115 -2 5 1269 453 108 398 10 chr1 89738383 89738486 -107456946 - B1_Mur4 SINE Alu -6 144 2 5 1269 1392 87 38 0 chr1 89738507 89738691 -107456741 - B2_Mm2 SINE B2 0 195 5 5 1269 291 246 31 0 chr1 89738773 89738838 -107456594 - ID4 SINE ID -14 69 3 5 1269 318 115 0 0 chr1 89738840 89738901 -107456531 + (TAA)n Simple_repeat Simple_repeat 1 61 0 5 1269 1703 26 0 0 chr1 89739015 89739207 -107456225 - B2_Mm1a SINE B2 0 193 2 5 1269 1073 158 69 10 chr1 89739364 89739568 -107455864 + B3 SINE B2 1 216 0 5 1269 292 231 31 0 chr1 89739957 89740022 -107455410 - ID2 SINE ID -14 69 3 5 1269 236 323 146 0 chr1 89740048 89740144 -107455288 + PB1D10 SINE Alu 8 117 0 5 1269 323 250 25 12 chr1 89740150 89740231 -107455201 + ID_B1 SINE B4 136 217 -7 5 1269 1328 98 11 0 chr1 89740240 89740423 -107455009 + B2_Mm1t SINE B2 1 185 -8 5 1269 1224 93 0 6 chr1 89740431 89740594 -107454838 + B2_Mm2 SINE B2 1 162 -33 5 1269 423 0 0 0 chr1 89740595 89740642 -107454790 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 5 1269 554 186 53 0 chr1 89740913 89741026 -107454406 + PB1D7 SINE Alu 2 120 0 5 1269 1198 35 14 0 chr1 89741039 89741182 -107454250 + B1_Mur4 SINE Alu 5 149 -1 5 1269 771 225 352 11 chr1 89742790 89743060 -107452372 - MTEb LTR MaLR -3 376 15 5 1269 638 149 0 7 chr1 89743771 89743920 -107451512 + (TG)n Simple_repeat Simple_repeat 2 149 0 5 1269 238 244 122 0 chr1 89744024 89744106 -107451326 - LTR77 LTR ERV1 -118 504 413 5 1269 218 122 24 0 chr1 89744106 89744147 -107451285 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 5 1269 207 0 0 0 chr1 89744268 89744291 -107451141 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1269 489 248 155 7 chr1 89744318 89744460 -107450972 - RSINE1 SINE B4 0 165 3 5 1269 183 325 250 0 chr1 89744522 89744642 -107450790 - MIRb SINE MIR -10 258 109 5 1269 189 0 0 0 chr1 89745073 89745094 -107450338 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1269 811 226 135 15 chr1 89745607 89745881 -107449551 - L1MC3 LINE L1 -13 7772 7466 5 1269 325 256 51 0 chr1 89746374 89746452 -107448980 - PB1D10 SINE Alu -10 107 26 5 1269 1217 78 21 48 chr1 89746555 89746743 -107448689 - B2_Mm1t SINE B2 -10 183 1 5 1269 3896 150 77 42 chr1 89746750 89747507 -107447925 - RMER1A Other Other -12 1018 286 5 1269 947 97 0 7 chr1 89747577 89747712 -107447720 - B1_Mus1 SINE Alu 0 148 15 5 1269 402 204 68 96 chr1 89747583 89747729 -107447703 - B4A SINE B4 -71 221 80 5 1269 387 342 12 6 chr1 89747747 89747909 -107447523 - RSINE1 SINE B4 -1 164 2 5 1269 361 236 35 43 chr1 89747909 89748013 -107447419 - MLT1B LTR MaLR -283 107 4 5 1269 356 221 0 25 chr1 89748307 89748386 -107447046 + Charlie5 DNA MER1_type 11 87 -2537 5 1269 1000 88 20 13 chr1 89748391 89748540 -107446892 - B1_Mur4 SINE Alu 0 150 1 5 1269 189 171 0 0 chr1 89748543 89748578 -107446854 + T-rich Low_complexity Low_complexity 4 38 0 5 1269 188 34 0 33 chr1 89749003 89749033 -107446399 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1269 190 303 15 0 chr1 89749419 89749485 -107445947 + L2b LINE L2 3024 3090 -285 5 1269 253 167 0 65 chr1 89749782 89749859 -107445573 + (CCCCG)n Simple_repeat Simple_repeat 5 76 0 5 1269 23 33 0 0 chr1 89749877 89749907 -107445525 + GC_rich Low_complexity Low_complexity 1 30 0 5 1269 22 35 0 0 chr1 89750035 89750064 -107445368 + GC_rich Low_complexity Low_complexity 1 29 0 5 1269 245 128 21 0 chr1 89750475 89750522 -107444910 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 5 1269 390 289 75 50 chr1 89751536 89751794 -107443638 - LTR33A LTR ERVL -28 503 232 5 1269 532 285 38 0 chr1 89751981 89752139 -107443293 - MER5A1 DNA MER1_type -1 165 2 5 1269 901 182 0 0 chr1 89752600 89752743 -107442689 - B1_Mus2 SINE Alu 0 147 5 5 1269 478 189 18 62 chr1 89752846 89752959 -107442473 - ID_B1 SINE B4 0 224 117 5 1269 481 242 99 8 chr1 89753050 89753171 -107442261 - ID_B1 SINE B4 -90 134 3 5 1269 403 234 435 0 chr1 89753220 89753374 -107442058 + ID_B1 SINE B4 3 223 -1 5 1269 211 314 125 19 chr1 89753444 89753548 -107441884 + PB1D10 SINE Alu 3 117 0 5 1269 486 254 138 178 chr1 89753557 89754036 -107441396 - L1MB7 LINE L1 -64 6120 5659 5 1269 366 147 0 0 chr1 89754036 89754104 -107441328 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1269 1027 47 0 0 chr1 89754124 89754251 -107441181 - B1_Mus1 SINE Alu -21 127 1 5 1269 254 242 16 40 chr1 89754143 89754268 -107441164 - ORR1B1-int LTR MaLR -755 754 633 5 1269 264 260 141 10 chr1 89754277 89754413 -107441019 - L1MB7 LINE L1 -573 5605 5442 5 1269 291 259 12 58 chr1 89754437 89754523 -107440909 - ID4 SINE ID 0 83 2 5 1269 232 291 240 0 chr1 89755131 89755306 -107440126 + MLT1C LTR MaLR 1 217 -173 5 1269 510 248 39 39 chr1 89755315 89755445 -107439987 + RSINE1 SINE B4 1 130 -35 5 1269 261 0 0 0 chr1 89755457 89755486 -107439946 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1269 272 341 47 16 chr1 89755558 89755686 -107439746 + MLT1C LTR MaLR 336 467 0 5 1269 658 266 29 0 chr1 89755803 89755942 -107439490 + RSINE1 SINE B4 2 144 -21 5 1269 45 19 0 0 chr1 89755957 89756009 -107439423 + AT_rich Low_complexity Low_complexity 1 52 0 5 1269 225 322 104 0 chr1 89756224 89756339 -107439093 + L1MEg LINE L1 1400 1526 -4716 5 1269 253 305 78 0 chr1 89756426 89756567 -107438865 + L1MEg LINE L1 1658 1809 -4433 5 1269 1212 61 0 7 chr1 89757009 89757157 -107438275 + B1_Mus1 SINE Alu 2 148 0 5 1269 230 263 126 8 chr1 89757187 89757306 -107438126 + L1MEg LINE L1 2252 2384 -3782 5 1269 407 284 77 8 chr1 89757465 89757582 -107437850 + ID_B1 SINE B4 91 215 -9 5 1269 467 275 0 0 chr1 89757650 89757759 -107437673 - PB1D7 SINE Alu -11 109 1 5 1269 462 308 154 32 chr1 89757759 89758128 -107437304 + L1MEg LINE L1 2531 2944 -3202 5 1269 430 209 70 0 chr1 89758153 89758239 -107437193 + PB1D7 SINE Alu 23 114 -6 5 1269 282 141 36 60 chr1 89758249 89758332 -107437100 + (CCAA)n Simple_repeat Simple_repeat 2 82 0 5 1269 211 267 0 0 chr1 89758478 89758523 -107436909 + G-rich Low_complexity Low_complexity 3 47 0 5 1269 388 267 32 43 chr1 89759736 89759830 -107435602 - B1F1 SINE Alu -51 98 6 5 1269 740 248 7 0 chr1 89759868 89760009 -107435423 - B1_Mur1 SINE Alu -7 142 1 5 1269 321 206 13 40 chr1 89760169 89760245 -107435187 - B1_Mur2 SINE Alu 0 149 76 5 1269 243 294 0 29 chr1 89760959 89761029 -107434403 + C-rich Low_complexity Low_complexity 3 70 0 5 1269 210 250 0 0 chr1 89761045 89761093 -107434339 - ID4 SINE ID -23 60 13 5 1269 561 146 0 0 chr1 89761158 89761240 -107434192 - B3 SINE B2 -133 83 2 5 1269 341 222 306 10 chr1 89761241 89761437 -107433995 - L1M4 LINE L1 -977 5169 4916 5 1269 360 0 0 0 chr1 89761637 89761677 -107433755 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1269 527 213 55 0 chr1 89761693 89761810 -107433622 - B1F SINE Alu -10 139 17 5 1269 579 263 0 0 chr1 89762203 89762321 -107433111 + PB1D9 SINE Alu 1 118 -2 5 1269 421 295 38 23 chr1 89762374 89762506 -107432926 + B3A SINE B2 65 198 0 5 1269 758 104 15 0 chr1 89762602 89762737 -107432695 + (TCTCTG)n Simple_repeat Simple_repeat 6 142 0 5 1269 464 292 42 72 chr1 89763268 89763504 -107431928 - RLTR14 LTR ERV1 0 382 154 5 1269 983 258 106 46 chr1 89763635 89763984 -107431448 - RLTR14-int LTR ERV1 0 5317 4948 5 1269 261 226 0 0 chr1 89764310 89764363 -107431069 - RLTR14-int LTR ERV1 -500 4817 4765 5 1269 3148 45 15 5 chr1 89764538 89764938 -107430494 + L1Md_F3 LINE L1 6181 6584 0 5 1269 329 265 68 11 chr1 89765026 89765193 -107430239 - RLTR14-int LTR ERV1 -1372 3945 3789 5 1269 2147 109 26 3 chr1 89765267 89765579 -107429853 - ORR1A4 LTR MaLR -8 321 3 5 1269 587 297 99 49 chr1 89765631 89766156 -107429276 - RLTR14-int LTR ERV1 -2390 5388 4811 5 1269 1524 58 5 5 chr1 89766158 89766350 -107429082 - B2_Mm2 SINE B2 -3 192 1 5 1269 388 370 9 17 chr1 89766652 89766883 -107428549 - RLTR14-int LTR ERV1 -3194 4584 4356 5 1269 375 269 217 16 chr1 89767025 89767167 -107428265 - RMER21B LTR ERV1 -258 689 415 5 1269 618 340 80 44 chr1 89767441 89768237 -107427195 - RLTR14-int LTR ERV1 -2644 2419 1968 5 1269 257 196 0 0 chr1 89768362 89768408 -107427024 - RMER21B LTR ERV1 -8 834 789 5 1269 1144 170 4 30 chr1 89768396 89768626 -107426806 + RMER21A LTR ERV1 724 947 0 5 1269 464 312 36 66 chr1 89768629 89768903 -107426529 - RLTR14-int LTR ERV1 -4966 351 86 6 1269 268 252 41 116 chr1 89768950 89769071 -107426361 - RLTR14 LTR ERV1 -25 357 246 6 1269 1184 64 0 0 chr1 89769084 89769225 -107426207 - B1_Mus2 SINE Alu -5 142 2 6 1269 1134 43 50 0 chr1 89769398 89769538 -107425894 + B1_Mus2 SINE Alu 1 147 0 6 1269 742 90 0 10 chr1 89770095 89770196 -107425236 - B1_Mur4 SINE Alu -8 142 43 6 1269 229 288 39 85 chr1 89770196 89770214 -107425218 - RLTR25B LTR ERVK -479 510 427 6 1269 464 333 0 0 chr1 89770215 89770389 -107425043 + CT-rich Low_complexity Low_complexity 4 177 0 6 1269 276 229 204 20 chr1 89770541 89770639 -107424793 - PB1D9 SINE Alu -2 118 3 6 1269 770 31 10 0 chr1 89771307 89771404 -107424028 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 6 1269 468 214 29 64 chr1 89771404 89771421 -107424011 - ID_B1 SINE B4 0 224 90 6 1269 698 148 57 8 chr1 89771421 89771544 -107423888 - B1_Mur3 SINE Alu -12 137 9 6 1269 503 212 57 50 chr1 89771568 89771727 -107423705 - Lx4B LINE L1 0 7058 6899 6 1269 515 290 36 14 chr1 89771984 89772124 -107423308 + ID_B1 SINE B4 81 223 -1 6 1269 243 0 0 0 chr1 89772292 89772319 -107423113 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1269 606 261 42 35 chr1 89772343 89772486 -107422946 - RSINE1 SINE B4 -21 144 1 6 1269 232 311 0 0 chr1 89772704 89772765 -107422667 - MLT1J LTR MaLR -217 295 235 6 1269 665 261 126 34 chr1 89773485 89773747 -107421685 - B4 SINE B4 -2 290 5 6 1269 405 102 0 0 chr1 89773782 89773841 -107421591 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6 1269 726 203 130 28 chr1 89773846 89774023 -107421409 - B3A SINE B2 -3 195 1 6 1269 909 142 14 7 chr1 89775766 89775908 -107419524 + B1_Mus1 SINE Alu 6 148 0 6 1269 404 192 51 0 chr1 89776088 89776166 -107419266 - ID4_ SINE ID 0 83 2 6 1269 277 302 67 0 chr1 89777124 89777253 -107418179 - ID4_ SINE ID -8 144 2 6 1269 579 230 0 0 chr1 89778773 89778912 -107416520 + CT-rich Low_complexity Low_complexity 2 140 0 6 1269 668 207 26 70 chr1 89778916 89779072 -107416360 - B1_Mur2 SINE Alu 0 149 1 6 1269 207 100 0 0 chr1 89779244 89779274 -107416158 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1269 791 209 99 56 chr1 89779903 89780010 -107415422 - URR1A DNA MER1_type 0 226 124 6 1269 1136 49 21 0 chr1 89780010 89780154 -107415278 - B1_Mus1 SINE Alu 0 148 2 6 1269 791 209 99 56 chr1 89780154 89780259 -107415173 - URR1A DNA MER1_type -103 123 5 6 1269 414 303 47 27 chr1 89780295 89780444 -107414988 - ID_B1 SINE B4 0 224 73 6 1269 544 214 98 162 chr1 89780457 89780691 -107414741 - ID_B1 SINE B4 -1 223 5 6 1269 1112 63 28 0 chr1 89780717 89780860 -107414572 - B1_Mus2 SINE Alu 0 147 1 6 1269 474 261 147 32 chr1 89780882 89781072 -107414360 - B3 SINE B2 -4 212 1 6 1269 289 353 68 0 chr1 89781081 89781214 -107414218 - B1F1 SINE Alu -7 142 1 6 1269 616 217 160 21 chr1 89781255 89781443 -107413989 - B3 SINE B2 0 216 3 6 1269 808 214 49 6 chr1 89781450 89781633 -107413799 - B3A SINE B2 -7 191 1 6 1269 459 0 0 0 chr1 89781669 89781720 -107413712 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1269 225 65 0 0 chr1 89781720 89781750 -107413682 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1269 230 362 29 0 chr1 89781764 89781869 -107413563 - PB1D10 SINE Alu -9 108 1 6 1269 33 25 0 0 chr1 89781879 89781919 -107413513 + AT_rich Low_complexity Low_complexity 1 40 0 6 1269 1037 212 47 123 chr1 89781976 89782293 -107413139 - ORR1C2 LTR MaLR -89 295 3 6 1269 867 206 75 17 chr1 89782936 89783135 -107412297 - B3 SINE B2 -5 190 3 6 1269 602 269 28 14 chr1 89783142 89783285 -107412147 - ID_B1 SINE B4 0 224 80 6 1269 379 289 266 12 chr1 89783881 89784200 -107411232 - MLT1C LTR MaLR 0 467 68 6 158 378 0 0 0 chr1 89784290 89784332 -107411100 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1270 1331 224 105 36 chr1 89784564 89784897 -107410535 - ORR1D2 LTR MaLR -14 356 1 6 1270 333 0 0 0 chr1 89785085 89785122 -107410310 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1270 458 229 21 0 chr1 89785204 89785300 -107410132 - PB1D10 SINE Alu -1 116 19 6 1270 319 189 79 26 chr1 89785305 89785381 -107410051 + Charlie4a DNA MER1_type 408 487 -21 6 1270 1513 55 0 5 chr1 89785504 89785705 -107409727 - L1Md_F2 LINE L1 -1 6581 6382 6 1270 2386 36 0 0 chr1 89785707 89785984 -107409448 - L1Md_A LINE L1 0 6582 6306 6 1270 1054 34 0 0 chr1 89785984 89786103 -107409329 - L1Md_F2 LINE L1 -189 6393 6275 6 1270 319 257 101 75 chr1 89786345 89786456 -107408976 - PB1D7 SINE Alu -1 119 18 6 1270 289 267 196 94 chr1 89786725 89786973 -107408459 - MLT2B3 LTR ERVL 0 533 283 6 1270 431 264 124 60 chr1 89786973 89787239 -107408193 + B4A SINE B4 2 284 -8 6 1270 231 279 81 16 chr1 89787453 89787515 -107407917 + PB1D10 SINE Alu 31 96 -53 6 1270 842 192 7 0 chr1 89789984 89790130 -107405302 + B1_Mus2 SINE Alu 1 147 0 6 1270 623 273 75 16 chr1 89790174 89790338 -107405094 + B3A SINE B2 2 177 -21 6 1270 333 0 0 0 chr1 89790338 89790375 -107405057 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 6 1270 623 273 75 16 chr1 89790375 89790396 -107405036 + B3A SINE B2 178 198 0 6 1270 305 258 131 37 chr1 89790615 89790778 -107404654 - L1M5 LINE L1 -832 5314 5124 6 1270 260 326 118 10 chr1 89790803 89790998 -107404434 - L1M5 LINE L1 -1105 5041 4826 6 1270 383 287 77 8 chr1 89791023 89791153 -107404279 - B1F SINE Alu -9 140 2 6 1270 852 252 9 32 chr1 89791220 89791441 -107403991 - B3 SINE B2 0 216 1 6 1270 760 196 72 0 chr1 89791497 89791635 -107403797 - B1_Mur2 SINE Alu 0 149 2 6 1270 350 300 47 59 chr1 89791787 89791957 -107403475 - L1M5 LINE L1 -2446 3700 3533 6 1270 242 300 55 20 chr1 89791971 89792088 -107403344 - ID4 SINE ID -26 126 3 6 1270 479 164 0 9 chr1 89792585 89792690 -107402742 + CT-rich Low_complexity Low_complexity 3 106 0 6 1270 222 37 0 0 chr1 89792686 89792713 -107402719 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1270 329 252 304 0 chr1 89794219 89794386 -107401046 - MER58A DNA MER1_type -7 217 1 6 1270 3273 276 64 38 chr1 89794490 89794709 -107400723 - Lx8 LINE L1 -1 7472 7236 6 1270 344 22 0 22 chr1 89794709 89794755 -107400677 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 1270 3273 276 64 38 chr1 89794755 89795650 -107399782 - Lx8 LINE L1 -238 7235 6331 6 1270 970 18 0 0 chr1 89795764 89795878 -107399554 - B1_Mm SINE Alu 0 147 34 6 1270 217 132 0 0 chr1 89796170 89796208 -107399224 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1270 498 229 220 0 chr1 89796532 89796650 -107398782 - RSINE1 SINE B4 -19 146 3 6 1270 1041 50 7 21 chr1 89796713 89796855 -107398577 - B1_Mus1 SINE Alu 0 148 9 6 1270 612 192 12 66 chr1 89796855 89796879 -107398553 - ID_B1 SINE B4 0 223 67 6 1270 1421 209 174 28 chr1 89796995 89797454 -107397978 - Lx7 LINE L1 -26 7670 7145 6 1270 225 0 0 0 chr1 89798389 89798414 -107397018 + (TGG)n Simple_repeat Simple_repeat 3 27 0 6 1270 1617 27 0 21 chr1 89798566 89798757 -107396675 - B2_Mm1a SINE B2 -5 188 2 6 1270 269 331 85 24 chr1 89799378 89799542 -107395890 - L1M5 LINE L1 -503 5737 5564 6 1270 11884 50 15 7 chr1 89800210 89801689 -107393743 + L1_Mm LINE L1 4091 5586 -297 6 1270 8136 41 17 3 chr1 89801689 89802667 -107392765 + L1Md_F2 LINE L1 5588 6579 -3 6 1270 11884 50 15 7 chr1 89802667 89802683 -107392749 + L1_Mm LINE L1 5587 5598 -285 6 1270 257 240 55 119 chr1 89803514 89803543 -107391889 + MT2B LTR ERVL 137 158 -443 6 1270 564 139 64 9 chr1 89803543 89803647 -107391785 + PB1D9 SINE Alu 2 111 -9 6 1270 281 47 0 23 chr1 89803647 89803691 -107391741 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1270 759 296 98 18 chr1 89803895 89804281 -107391151 - L1MD1 LINE L1 -229 6013 5597 6 1270 339 298 56 7 chr1 89804307 89804449 -107390983 - RSINE1 SINE B4 -13 152 4 6 1270 495 207 330 44 chr1 89804545 89804772 -107390660 - B4 SINE B4 0 292 1 6 1270 394 284 49 0 chr1 89806488 89806590 -107388842 - PB1D10 SINE Alu -5 112 6 6 1270 271 316 0 13 chr1 89807203 89807280 -107388152 + RSINE1 SINE B4 86 161 -4 6 1270 848 161 8 29 chr1 89807474 89807718 -107387714 + CT-rich Low_complexity Low_complexity 1 238 0 6 1270 270 234 98 34 chr1 89807947 89808058 -107387374 - B1_Mur1 SINE Alu -11 138 1 6 1270 539 308 102 56 chr1 89809770 89810162 -107385270 + L1MC4a LINE L1 5511 5920 -1962 6 1270 404 157 22 0 chr1 89810225 89810314 -107385118 + CT-rich Low_complexity Low_complexity 4 94 0 6 1270 435 301 184 0 chr1 89810438 89810574 -107384858 - RSINE1 SINE B4 -2 163 3 6 1270 247 301 118 7 chr1 89810612 89810756 -107384676 - L1MC LINE L1 -2287 5595 5436 6 1270 2237 106 25 0 chr1 89811272 89811593 -107383839 - ORR1A4 LTR MaLR 0 329 1 6 1270 352 252 174 35 chr1 89812546 89812690 -107382742 + Cheshire DNA MER1_type 11 174 -2246 6 1270 915 250 23 51 chr1 89815399 89815487 -107379945 + B3 SINE B2 5 93 -123 6 1270 1813 156 27 93 chr1 89815487 89815926 -107379506 + RMER17C LTR ERVK 1 410 0 6 1270 915 250 23 51 chr1 89815926 89816052 -107379380 + B3 SINE B2 94 213 -3 6 1270 183 50 23 70 chr1 89816660 89816703 -107378729 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1270 839 168 28 14 chr1 89819076 89819221 -107376211 + B1_Mur4 SINE Alu 2 148 -2 6 1270 2906 258 116 41 chr1 89824732 89825742 -107369690 - Lx8 LINE L1 0 7473 6388 6 1270 1144 122 0 34 chr1 89825753 89825931 -107369501 - B2_Mm2 SINE B2 -23 172 1 6 1270 503 267 16 24 chr1 89825933 89826056 -107369376 - Lx8 LINE L1 -1075 6398 6277 6 1270 339 346 136 4 chr1 89827822 89828057 -107367375 + L1M4 LINE L1 5557 5822 -362 6 1270 230 318 0 43 chr1 89828935 89828975 -107366457 - RSINE1 SINE B4 -17 148 112 6 1270 3162 39 5 0 chr1 89828975 89829360 -107366072 - MTA_Mm LTR MaLR 0 396 10 7 1270 569 257 102 81 chr1 89829364 89829610 -107365822 - B4 SINE B4 -36 256 6 7 1270 3008 204 106 28 chr1 89829858 89830606 -107364826 - RMER13B LTR ERVK -102 806 1 7 1270 211 356 134 40 chr1 89831552 89831754 -107363678 - MIR SINE MIR -12 250 30 7 1270 520 192 47 3 chr1 89836507 89836623 -107358809 + B3A SINE B2 1 117 -99 7 1270 207 0 0 0 chr1 89841780 89841803 -107353629 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1270 771 174 218 11 chr1 89843358 89843532 -107351900 - B3 SINE B2 -6 210 1 7 1270 213 94 0 0 chr1 89843619 89843651 -107351781 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 7 1270 216 0 0 0 chr1 89843653 89843677 -107351755 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1270 1161 58 0 0 chr1 89843677 89843816 -107351616 - B1_Mus1 SINE Alu -9 139 1 7 1270 304 243 70 14 chr1 89845359 89845430 -107350002 - RSINE1 SINE B4 -17 148 74 7 1270 256 248 215 69 chr1 89845490 89845620 -107349812 + B4A SINE B4 138 286 -6 7 1270 402 272 0 11 chr1 89845638 89845731 -107349701 - PB1D10 SINE Alu -24 93 2 7 1270 296 318 34 0 chr1 89845653 89845741 -107349691 - B4A SINE B4 -125 167 77 7 1270 322 177 154 58 chr1 89845760 89845782 -107349650 - L1M5 LINE L1 -2407 3739 3723 7 1270 1152 219 180 24 chr1 89845782 89846110 -107349322 + MTE2a LTR MaLR 1 379 0 7 1270 322 177 154 58 chr1 89846110 89846243 -107349189 - L1M5 LINE L1 -2424 3722 3569 7 1270 1464 65 5 0 chr1 89846266 89846451 -107348981 - B2_Mm1a SINE B2 -7 186 1 7 1270 214 365 29 9 chr1 89847668 89847773 -107347659 - L2a LINE L2 -33 3393 3287 7 1270 180 0 0 0 chr1 89848018 89848038 -107347394 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1270 289 266 0 0 chr1 89848038 89848102 -107347330 - PB1D7 SINE Alu -13 107 44 7 1270 349 266 164 0 chr1 89849167 89849295 -107346137 + B1F SINE Alu 1 149 0 7 1270 22 0 0 0 chr1 89849412 89849434 -107345998 + AT_rich Low_complexity Low_complexity 1 22 0 7 1270 821 153 7 0 chr1 89849541 89849678 -107345754 - B1_Mur2 SINE Alu -3 146 9 7 1270 473 215 106 16 chr1 89851313 89851436 -107343996 + B1F1 SINE Alu 10 143 -6 7 1270 259 373 57 32 chr1 89851448 89851606 -107343826 + RSINE1 SINE B4 4 165 0 7 1270 377 278 18 9 chr1 89851847 89851956 -107343476 - PB1D10 SINE Alu -7 110 1 7 1270 976 81 87 0 chr1 89852068 89852217 -107343215 - B2_Mm2 SINE B2 -33 162 1 7 1270 1092 220 148 36 chr1 89852828 89853186 -107342246 + MTC LTR MaLR 1 398 -23 7 1270 288 0 0 0 chr1 89853306 89853338 -107342094 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1270 535 197 128 0 chr1 89853350 89853467 -107341965 - B3 SINE B2 -44 172 41 7 1270 222 37 0 0 chr1 89853489 89853516 -107341916 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1270 1210 95 15 55 chr1 89853527 89853727 -107341705 - B2_Mm2 SINE B2 -3 192 1 7 1270 446 235 29 0 chr1 89853950 89854052 -107341380 - B3A SINE B2 -92 106 2 7 1270 228 307 26 13 chr1 89854108 89854184 -107341248 + ID4_ SINE ID 2 78 -5 7 1270 309 234 208 0 chr1 89854300 89854377 -107341055 + B1F SINE Alu 1 93 -56 7 1270 258 219 110 0 chr1 89855127 89855209 -107340223 + B4A SINE B4 3 93 -199 7 1270 382 333 63 0 chr1 89855221 89855347 -107340085 + B4A SINE B4 157 290 -2 7 1270 207 220 0 0 chr1 89855395 89855445 -107339987 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1270 654 200 49 21 chr1 89855640 89855783 -107339649 + B3 SINE B2 70 216 0 7 1270 800 173 21 7 chr1 89855920 89856060 -107339372 + B1_Mur1 SINE Alu 1 142 -7 7 1270 49 43 0 0 chr1 89856106 89856176 -107339256 + AT_rich Low_complexity Low_complexity 1 70 0 7 1270 388 268 18 9 chr1 89857200 89857313 -107338119 + PB1D10 SINE Alu 3 116 -1 7 1270 965 202 144 41 chr1 89857384 89857746 -107337686 + RMER13A LTR ERVK 72 470 -390 7 1270 410 257 79 22 chr1 89858781 89858920 -107336512 + RSINE1 SINE B4 3 149 -16 7 1270 443 145 12 0 chr1 89859457 89859540 -107335892 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 1270 180 0 0 0 chr1 89859888 89859908 -107335524 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1270 382 185 25 62 chr1 89859908 89860069 -107335363 - RMER17B LTR ERVK -499 459 305 7 1270 1472 72 0 15 chr1 89860201 89860397 -107335035 + B2_Mm2 SINE B2 2 194 -1 7 1270 273 279 0 0 chr1 89860474 89860542 -107334890 - ID4_ SINE ID -15 68 1 7 1270 522 143 102 28 chr1 89860605 89860713 -107334719 - B1_Mur2 SINE Alu 0 149 34 7 1270 1397 180 8 8 chr1 89860707 89860970 -107334462 + MTB_Mm LTR MaLR 145 407 0 7 1270 250 247 41 0 chr1 89861007 89861080 -107334352 - ID_B1 SINE B4 -59 165 90 7 1270 212 271 17 0 chr1 89861028 89861087 -107334345 - B1F2 SINE Alu -88 61 2 7 1270 496 259 30 0 chr1 89863423 89863558 -107331874 - ID_B1 SINE B4 -1 223 85 7 1270 314 98 35 58 chr1 89865246 89865333 -107330099 + A-rich Low_complexity Low_complexity 1 85 0 7 1270 696 320 108 58 chr1 89865410 89865591 -107329841 - Tigger6a DNA MER2_type -82 1001 808 7 1270 525 191 123 31 chr1 89865591 89865721 -107329711 + B1F2 SINE Alu 1 142 -7 7 1270 696 291 210 47 chr1 89865721 89866238 -107329194 - Tigger6a DNA MER2_type -276 807 209 7 1270 243 330 48 10 chr1 89866714 89866818 -107328614 + PB1 SINE Alu 1 108 -19 7 1270 339 211 186 8 chr1 89867732 89867861 -107327571 - L1M5 LINE L1 -386 5778 5627 7 1270 205 81 37 86 chr1 89867887 89867968 -107327464 + A-rich Low_complexity Low_complexity 2 78 0 7 1270 4520 32 0 9 chr1 89868421 89868958 -107326474 - L1Md_F2 LINE L1 0 6582 6051 7 1270 487 202 0 28 chr1 89869155 89869262 -107326170 - B1_Mur1 SINE Alu -3 146 43 7 1270 486 262 102 41 chr1 89869262 89869527 -107325905 - L1M5 LINE L1 -1474 4672 4400 7 1270 423 285 10 24 chr1 89869546 89869670 -107325762 + PB1D10 SINE Alu 14 147 -1 7 1270 574 295 65 17 chr1 89869749 89870209 -107325223 + L1ME1 LINE L1 5436 5964 -215 7 1270 381 343 0 0 chr1 89871374 89871476 -107323956 + RSINE1 SINE B4 3 104 -61 7 1270 585 152 75 15 chr1 89871637 89871771 -107323661 + Lx4A LINE L1 6917 7058 0 7 1270 452 160 105 11 chr1 89871792 89871887 -107323545 + PB1D9 SINE Alu 6 109 -11 7 1270 327 205 250 57 chr1 89872735 89872859 -107322573 - B1F SINE Alu -1 148 1 7 1270 1432 187 46 26 chr1 89873182 89873308 -107322124 + ORR1D1 LTR MaLR 43 164 -210 7 1270 395 19 19 0 chr1 89873308 89873360 -107322072 + (CAGT)n Simple_repeat Simple_repeat 4 56 0 7 1270 1432 187 46 26 chr1 89873360 89873535 -107321897 + ORR1D1 LTR MaLR 165 350 -24 7 1270 234 257 129 19 chr1 89873728 89873857 -107321575 - MIR SINE MIR -66 196 51 7 1270 641 242 91 5 chr1 89875783 89875970 -107319462 - B4 SINE B4 -87 205 3 7 1270 255 273 30 0 chr1 89876036 89876102 -107319330 + CT-rich Low_complexity Low_complexity 2 69 0 7 1270 385 279 100 8 chr1 89876104 89876234 -107319198 - B1F SINE Alu -7 142 1 7 1270 1065 210 18 44 chr1 89876299 89876528 -107318904 - ID_B1 SINE B4 0 224 2 7 1270 492 224 28 0 chr1 89877274 89877381 -107318051 + RSINE1 SINE B4 9 118 -47 7 1270 225 234 46 15 chr1 89877994 89878059 -107317373 + ID4 SINE ID 2 68 -15 7 1270 180 0 0 0 chr1 89878882 89878902 -107316530 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1270 852 248 64 10 chr1 89879724 89879928 -107315504 - B3 SINE B2 0 216 2 7 1270 462 229 19 9 chr1 89880491 89880597 -107314835 + PB1D10 SINE Alu 4 110 -7 7 1270 696 210 67 1 chr1 89880602 89880780 -107314652 + B3A SINE B2 3 198 -18 7 1270 22 0 0 0 chr1 89880864 89880886 -107314546 + AT_rich Low_complexity Low_complexity 1 22 0 7 1270 549 169 58 39 chr1 89881015 89881169 -107314263 + Lx4A LINE L1 6902 7058 0 7 1270 25 0 0 0 chr1 89881169 89881194 -107314238 + AT_rich Low_complexity Low_complexity 1 25 0 7 1270 757 228 64 6 chr1 89881219 89881391 -107314041 + B3 SINE B2 32 213 -3 7 1270 641 245 13 26 chr1 89881422 89881573 -107313859 - B1F SINE Alu 0 149 1 7 1270 848 257 24 0 chr1 89881797 89882003 -107313429 - B3 SINE B2 -5 211 1 7 1270 256 140 298 0 chr1 89882030 89882087 -107313345 + ORR1C2 LTR MaLR 1 74 -310 7 1270 23 33 0 0 chr1 89882809 89882839 -107312593 + AT_rich Low_complexity Low_complexity 1 30 0 7 1270 240 59 0 0 chr1 89882857 89882891 -107312541 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 1270 1044 292 147 33 chr1 89883293 89884024 -107311408 + L1MA4A LINE L1 5087 5961 -195 7 1270 22 0 0 0 chr1 89884273 89884295 -107311137 + AT_rich Low_complexity Low_complexity 1 22 0 7 1270 260 200 58 70 chr1 89884621 89884707 -107310725 + L1M5 LINE L1 3131 3215 -2931 7 1270 1003 46 0 0 chr1 89884785 89884915 -107310517 + B1_Mus2 SINE Alu 18 147 0 7 1270 668 304 65 0 chr1 89885971 89886172 -107309260 - ID_B1 SINE B4 -8 216 3 7 1270 441 295 9 0 chr1 89886220 89886332 -107309100 - PB1D7 SINE Alu -5 115 3 7 1270 588 180 101 8 chr1 89886355 89886484 -107308948 + B1_Mur1 SINE Alu 7 147 -2 7 1270 1672 204 46 11 chr1 89886964 89887335 -107308097 + ORR1C2 LTR MaLR 1 384 0 7 1270 550 178 0 29 chr1 89887576 89887680 -107307752 - PB1D9 SINE Alu -1 119 19 7 1270 571 258 130 11 chr1 89887759 89887943 -107307489 - B3 SINE B2 -9 207 2 7 1270 1137 192 122 19 chr1 89888208 89888478 -107306954 + MTE2b LTR MaLR 16 313 -66 8 1270 376 319 20 59 chr1 89888610 89888763 -107306669 - MER21B LTR ERV1 -103 760 614 8 1270 1047 209 96 85 chr1 89888964 89889426 -107306006 + MT2A LTR ERVL 3 594 -7 8 1270 262 268 163 10 chr1 89889753 89889851 -107305581 - PB1D10 SINE Alu 0 117 5 8 1270 339 40 0 0 chr1 89890948 89890998 -107304434 + B1_Mur4 SINE Alu 101 150 0 8 1270 233 125 18 0 chr1 89891002 89891058 -107304374 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 8 1270 521 66 0 13 chr1 89891356 89891433 -107303999 - B1_Mus2 SINE Alu 0 147 72 8 1270 284 215 52 31 chr1 89891357 89891453 -107303979 - ID_B1 SINE B4 0 224 127 8 1270 394 245 58 10 chr1 89891871 89891974 -107303458 + PB1D10 SINE Alu 4 111 -6 8 1270 190 0 67 0 chr1 89891976 89892006 -107303426 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1270 414 162 0 0 chr1 89892004 89892078 -107303354 + A-rich Low_complexity Low_complexity 1 74 0 8 1270 3220 53 5 5 chr1 89892529 89892925 -107302507 + MTA_Mm LTR MaLR 1 396 0 8 1270 1240 48 0 0 chr1 89893048 89893195 -107302237 - B1_Mm SINE Alu 0 147 1 8 1270 1159 114 74 0 chr1 89893519 89893695 -107301737 + B2_Mm2 SINE B2 2 190 -5 8 1270 892 255 19 0 chr1 89893695 89893907 -107301525 - B3 SINE B2 0 216 1 8 1270 959 97 0 14 chr1 89894941 89895088 -107300344 - B1_Mus2 SINE Alu -1 146 2 8 1270 23 0 0 0 chr1 89895408 89895431 -107300001 + AT_rich Low_complexity Low_complexity 1 23 0 8 1270 521 243 97 48 chr1 89895844 89896030 -107299402 - B3A SINE B2 -3 195 1 8 1270 378 277 0 65 chr1 89896149 89896257 -107299175 + RSINE1 SINE B4 4 104 -61 8 1270 389 206 76 0 chr1 89896498 89896590 -107298842 - PB1D10 SINE Alu 0 117 19 8 1270 788 316 30 3 chr1 89897704 89897999 -107297433 + L1MB7 LINE L1 5851 6153 -31 8 1270 1424 65 5 16 chr1 89898605 89898793 -107296639 - B2_Mm1a SINE B2 -6 187 2 8 1270 476 244 86 132 chr1 89900184 89900242 -107295190 + B4A SINE B4 2 53 -239 8 1270 1237 22 0 0 chr1 89900242 89900381 -107295051 + B1_Mm SINE Alu 1 139 -8 8 1270 183 100 0 0 chr1 89900381 89900411 -107295021 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 8 1270 476 244 86 132 chr1 89900411 89900422 -107295010 + B4A SINE B4 54 56 -236 8 1270 216 0 0 0 chr1 89900422 89900446 -107294986 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1270 476 244 86 132 chr1 89900446 89900676 -107294756 + B4A SINE B4 57 288 -4 8 1270 342 273 45 18 chr1 89901129 89901241 -107294191 + PB1D10 SINE Alu 2 116 -1 8 1270 180 0 0 0 chr1 89901943 89901963 -107293469 + (TTCTC)n Simple_repeat Simple_repeat 5 24 0 8 1270 226 181 151 25 chr1 89901963 89902114 -107293318 + RMER17C LTR ERVK 104 275 -135 8 1270 445 245 29 0 chr1 89902204 89902306 -107293126 - PB1D10 SINE Alu 0 117 13 8 1270 282 56 0 0 chr1 89902433 89902469 -107292963 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1270 384 324 97 4 chr1 89903131 89903357 -107292075 - MER46C DNA MER2_type -13 325 79 8 1270 1793 186 40 10 chr1 89906138 89906534 -107288898 + MTD LTR MaLR 12 419 0 8 1270 14966 55 3 0 chr1 89906858 89908708 -107286724 + L1Md_F2 LINE L1 3731 5586 -297 8 1270 7801 64 0 12 chr1 89908708 89909716 -107285716 + L1Md_F2 LINE L1 5587 6582 0 8 1270 1819 121 94 39 chr1 89911132 89911454 -107283978 - RLTR47_MM LTR ERV1 0 532 191 8 1270 3845 159 165 12 chr1 89911454 89912296 -107283136 - RLTR13D3 LTR ERVK 0 1114 144 8 1270 829 138 72 7 chr1 89912825 89912964 -107282468 - RLTR13D3 LTR ERVK -835 148 1 8 1270 667 99 201 19 chr1 89912964 89913118 -107282314 - RLTR47_MM LTR ERV1 -350 182 1 8 1270 373 257 157 40 chr1 89913435 89913658 -107281774 - Lx6 LINE L1 -1249 6211 5963 8 1270 656 273 117 44 chr1 89913688 89914098 -107281334 + RLTR12B LTR ERVK 47 486 -42 8 1270 1749 124 19 45 chr1 89914210 89914522 -107280910 - RLTR23 LTR ERV1 -29 401 98 8 1270 200 31 0 59 chr1 89914552 89914586 -107280846 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 8 1270 507 93 163 0 chr1 89914595 89914681 -107280751 - RLTR23 LTR ERV1 -330 100 1 8 1270 504 304 1 21 chr1 89914811 89915009 -107280423 - RLTR6-int LTR ERV1 -299 7479 7110 8 1271 3770 76 0 0 chr1 89915858 89916342 -107279090 - L1Md_T LINE L1 0 6582 6099 8 1271 896 62 0 0 chr1 89916342 89916454 -107278978 + L1Md_T LINE L1 5970 6081 -501 8 1271 521 149 130 16 chr1 89916758 89916881 -107278551 - RLTR23 LTR ERV1 -293 137 1 8 1271 1423 139 71 50 chr1 89916898 89917179 -107278253 - L1_Mur3 LINE L1 0 5880 5594 8 1271 3742 158 8 61 chr1 89917176 89917932 -107277500 - L1_Mur3 LINE L1 -1114 4766 4051 8 1271 200 204 0 0 chr1 89918292 89918336 -107277096 + (CACCAT)n Simple_repeat Simple_repeat 2 45 0 8 1271 222 62 0 0 chr1 89923148 89923180 -107272252 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1271 4893 255 41 58 chr1 89923399 89923907 -107271525 - Lx6 LINE L1 -229 7231 6750 8 1271 1230 102 21 11 chr1 89923907 89924095 -107271337 - B2_Mm2 SINE B2 -1 194 5 8 1271 4893 255 41 58 chr1 89924095 89925059 -107270373 - Lx6 LINE L1 -711 6749 5783 8 1271 701 214 7 0 chr1 89925063 89925203 -107270229 - B1_Mus1 SINE Alu -7 141 1 8 1271 42082 6 0 1 chr1 89925217 89932002 -107263430 - L1Md_A LINE L1 0 6582 1 8 1271 2890 153 100 2 chr1 89932038 89932606 -107262826 - L1_Mur3 LINE L1 -1206 4674 4051 8 1271 1046 105 14 7 chr1 89932767 89932911 -107262521 + B1_Mus1 SINE Alu 2 146 -2 8 1271 210 37 0 0 chr1 89932911 89932938 -107262494 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1271 186 43 0 0 chr1 89934191 89934214 -107261218 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 8 1271 477 0 0 0 chr1 89934709 89934762 -107260670 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1271 802 259 161 0 chr1 89934776 89935100 -107260332 - BGLII_B LTR ERVK -60 381 6 8 1271 1284 105 5 16 chr1 89936363 89936556 -107258876 - B2_Mm1a SINE B2 -2 191 1 8 1271 701 231 7 13 chr1 89938072 89938221 -107257211 - B1_Mur4 SINE Alu 0 150 3 8 1271 532 279 115 29 chr1 89938548 89938755 -107256677 - L1M3b LINE L1 -1351 4996 4767 8 1271 1689 219 41 24 chr1 89938755 89939167 -107256265 - MTD LTR MaLR 0 419 1 8 1271 532 279 115 29 chr1 89939167 89939273 -107256159 - L1M3b LINE L1 -1581 4766 4656 8 1271 230 225 141 0 chr1 89939577 89939648 -107255784 - L1M3b LINE L1 -5923 358 278 8 1271 206 192 0 19 chr1 89940254 89940307 -107255125 + CT-rich Low_complexity Low_complexity 3 54 0 8 1271 258 270 108 14 chr1 89941021 89941160 -107254272 + MTE-int LTR MaLR 1415 1566 -14 8 1271 691 231 7 13 chr1 89942401 89942550 -107252882 - B1_Mur4 SINE Alu 0 150 3 8 1271 416 286 52 33 chr1 89942872 89942976 -107252456 - L1M3b LINE L1 -1478 4869 4767 8 1271 1575 238 36 24 chr1 89942976 89943390 -107252042 - MTD LTR MaLR 0 419 1 8 1271 416 286 52 33 chr1 89943390 89943495 -107251937 - L1M3b LINE L1 -1581 4766 4656 8 1271 238 206 151 0 chr1 89943810 89943883 -107251549 - L1M3b LINE L1 -5920 361 278 8 1271 251 244 15 38 chr1 89944457 89944539 -107250893 + CT-rich Low_complexity Low_complexity 1 80 0 8 1271 280 385 41 64 chr1 89944547 89944766 -107250666 - L1M3b LINE L1 -5180 1101 888 8 1271 580 245 7 14 chr1 89946618 89946763 -107248669 - B1_Mur4 SINE Alu 0 150 7 8 1271 521 278 90 57 chr1 89947051 89947098 -107248334 - L1M2 LINE L1 -1326 4817 4778 8 1271 210 37 0 0 chr1 89947098 89947125 -107248307 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8 1271 521 278 90 57 chr1 89947125 89947325 -107248107 - L1M2 LINE L1 -1366 4777 4560 8 1271 1438 221 62 30 chr1 89947325 89947731 -107247701 - MTD LTR MaLR 0 419 1 8 1271 521 278 90 57 chr1 89947731 89947836 -107247596 - L1M2 LINE L1 -1584 4559 4453 8 1271 8578 29 0 8 chr1 89948003 89948656 -107246776 - L1Md_F2 LINE L1 -12 6570 5925 8 1271 3568 18 2 0 chr1 89948656 89949051 -107246381 + MTA_Mm LTR MaLR 1 396 0 8 1271 8578 34 0 5 chr1 89949051 89949586 -107245846 - L1Md_F2 LINE L1 -658 5924 5390 8 1271 599 308 32 51 chr1 89949591 89949903 -107245529 + MTE2a LTR MaLR 57 362 -17 8 1271 2390 213 77 12 chr1 89949934 89950531 -107244901 - Lx5 LINE L1 -433 6625 5963 8 1271 336 270 113 0 chr1 89950512 89950627 -107244805 + Lx5 LINE L1 6919 7046 -4 8 1271 492 153 0 0 chr1 89953428 89953513 -107241919 + A-rich Low_complexity Low_complexity 5 89 0 8 1271 5130 266 29 46 chr1 89953729 89954236 -107241196 - Lx6 LINE L1 -229 7231 6752 8 1271 1124 119 48 11 chr1 89954236 89954423 -107241009 - B2_Mm2 SINE B2 0 195 2 8 1271 5130 266 29 46 chr1 89954423 89955382 -107240050 - Lx6 LINE L1 -709 6751 5791 8 1271 741 203 14 0 chr1 89955386 89955534 -107239898 - B1_Mur4 SINE Alu 0 150 1 8 1271 2706 158 118 4 chr1 89955563 89955605 -107239827 - L1_Mur3 LINE L1 -1206 4674 4624 8 1271 216 86 0 0 chr1 89955605 89955640 -107239792 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1271 2706 158 118 4 chr1 89955640 89956157 -107239275 - L1_Mur3 LINE L1 -1257 4623 4052 8 1271 1101 95 0 0 chr1 89956316 89956464 -107238968 + B1_Mus1 SINE Alu 1 148 0 8 1271 206 232 18 0 chr1 89956632 89956688 -107238744 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1271 312 27 0 0 chr1 89957721 89957758 -107237674 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 8 1271 791 281 168 3 chr1 89958230 89958255 -107237177 - BGLII_B LTR ERVK -12 429 405 8 1271 498 17 0 0 chr1 89958255 89958314 -107237118 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1271 791 281 168 3 chr1 89958314 89958652 -107236780 - BGLII_B LTR ERVK -37 404 6 8 1271 1336 99 5 10 chr1 89959915 89960108 -107235324 - B2_Mm1a SINE B2 -1 192 1 8 1271 677 224 7 14 chr1 89961625 89961770 -107233662 - B1_Mur4 SINE Alu 0 150 7 8 1271 573 275 115 29 chr1 89962101 89962308 -107233124 - L1M3b LINE L1 -1351 4996 4767 8 1271 1678 221 41 24 chr1 89962308 89962720 -107232712 - MTD LTR MaLR 0 419 1 8 1271 573 275 115 29 chr1 89962720 89962826 -107232606 - L1M3b LINE L1 -1581 4766 4656 8 1271 230 225 141 0 chr1 89963131 89963202 -107232230 - L1M3b LINE L1 -5923 358 278 8 1271 251 244 15 38 chr1 89963776 89963858 -107231574 + CT-rich Low_complexity Low_complexity 1 80 0 8 1271 237 390 41 64 chr1 89963866 89964085 -107231347 - L1M3b LINE L1 -5180 1101 888 8 1271 271 274 87 16 chr1 89964570 89964696 -107230736 + MTE2a-int LTR MaLR 1415 1549 -31 8 1271 770 260 52 120 chr1 89964724 89965131 -107230301 + MTE2a LTR MaLR 1 379 0 8 1271 2094 229 60 19 chr1 89965184 89965713 -107229719 - Lx5 LINE L1 -494 6556 6006 8 1271 313 273 27 18 chr1 89965734 89965846 -107229586 + Lx5 LINE L1 6934 7046 -4 8 1271 1169 75 0 0 chr1 89966869 89967016 -107228416 - B1_Mus2 SINE Alu 0 147 1 8 1271 3379 221 67 7 chr1 89968626 89969354 -107226078 - Lx6 LINE L1 -547 6913 6142 8 1271 2442 121 48 89 chr1 89969652 89970133 -107225299 - L1_Mur3 LINE L1 -1369 4511 4051 8 1271 200 200 22 0 chr1 89970441 89970486 -107224946 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1271 594 206 47 14 chr1 89972226 89972374 -107223058 - RLTR22_Mur LTR ERVK -117 1731 1579 9 1271 2269 189 19 10 chr1 89972437 89972918 -107222514 - RLTR22_Mur LTR ERVK -1039 809 325 9 1271 412 262 40 27 chr1 89972904 89973053 -107222379 + RLTR23 LTR ERV1 280 430 0 9 1271 681 281 35 10 chr1 89973138 89973370 -107222062 - BGLII_B LTR ERVK -17 424 170 9 1271 1578 150 3 35 chr1 89973366 89973650 -107221782 - RMER20A LTR ERVK -241 275 1 9 1271 1488 156 13 26 chr1 89973671 89973973 -107221459 - RLTR17 LTR ERVK -328 364 67 9 1271 1551 166 23 41 chr1 89973973 89974318 -107221114 - RMER3D-int LTR ERVK -12 2830 2492 9 1271 7085 83 8 0 chr1 89974318 89975686 -107219746 - L1VL4 LINE L1 -2160 1399 20 9 1271 1140 55 21 0 chr1 89976848 89976993 -107218439 - B1_Mus1 SINE Alu 0 148 1 9 1271 1163 246 89 86 chr1 89977909 89978573 -107216859 - L1M2 LINE L1 -1421 5424 4759 9 1271 206 57 0 54 chr1 89978623 89978660 -107216772 + (GGGAA)n Simple_repeat Simple_repeat 4 38 0 9 1271 1541 95 15 15 chr1 89978661 89978928 -107216504 + BGLII LTR ERVK 155 421 0 9 1271 1238 123 128 0 chr1 89978930 89979157 -107216275 - MTD LTR MaLR -14 405 150 9 1271 311 201 109 70 chr1 89979357 89979520 -107215912 - RLTR13D3 LTR ERVK 0 1114 983 9 1271 234 158 0 0 chr1 89980267 89980305 -107215127 - RLTR13D3 LTR ERVK -1076 38 1 9 1271 339 336 0 64 chr1 89980748 89980904 -107214528 - L1M2 LINE L1 -4317 2532 2387 9 1271 1104 137 21 5 chr1 89980946 89981137 -107214295 - ORR1C2 LTR MaLR 0 384 191 9 1271 945 47 0 0 chr1 89981137 89981264 -107214168 + (GA)n Simple_repeat Simple_repeat 2 128 0 9 1271 237 154 0 0 chr1 89981283 89981322 -107214110 - ORR1C2 LTR MaLR -342 42 4 9 1271 1269 293 47 42 chr1 89981998 89982525 -107212907 - MT2A LTR ERVL -2 531 2 9 1271 278 357 72 64 chr1 89982640 89983170 -107212262 - L1M2 LINE L1 -5720 1059 526 9 1271 586 202 69 50 chr1 89983218 89983358 -107212074 - B1_Mur2 SINE Alu -5 144 10 9 1271 1342 95 17 0 chr1 89986009 89986188 -107209244 - B2_Mm2 SINE B2 -9 186 5 9 1271 809 69 0 17 chr1 89986188 89986306 -107209126 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 9 1271 995 69 30 23 chr1 89986307 89986440 -107208992 - B1_Mus2 SINE Alu -12 135 2 9 1271 651 65 0 0 chr1 89986443 89986536 -107208896 + (TC)n Simple_repeat Simple_repeat 1 93 0 9 1271 510 17 0 0 chr1 89986540 89986599 -107208833 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 9 1271 213 39 0 0 chr1 89986602 89986628 -107208804 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 9 1271 677 211 0 8 chr1 89986636 89986765 -107208667 - B1_Mus2 SINE Alu -19 128 1 9 1271 736 192 47 62 chr1 89987199 89987410 -107208022 - B3 SINE B2 0 216 9 9 1271 3341 40 20 2 chr1 89987880 89988280 -107207152 - MTB_Mm LTR MaLR 0 407 1 9 1271 620 291 0 60 chr1 89988340 89988541 -107206891 + B3A SINE B2 10 198 0 9 1271 1333 248 83 5 chr1 89988993 89989310 -107206122 + MTD LTR MaLR 5 352 -67 9 1271 495 0 0 0 chr1 89989310 89989365 -107206067 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 9 1271 1333 248 83 5 chr1 89989365 89989432 -107206000 + MTD LTR MaLR 353 419 0 9 1271 592 246 99 35 chr1 89989806 89990008 -107205424 + B3 SINE B2 1 215 -1 9 1271 333 280 36 102 chr1 89990078 89990100 -107205332 + B4 SINE B4 70 224 -67 9 1271 711 197 0 14 chr1 89990100 89990244 -107205188 + B1_Mus2 SINE Alu 5 146 -1 9 1271 285 29 0 0 chr1 89990245 89990279 -107205153 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 9 1271 270 170 0 0 chr1 89990896 89990943 -107204489 + L1M4 LINE L1 5696 5742 -432 9 1271 276 53 0 0 chr1 89992746 89992784 -107202648 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1271 909 67 0 43 chr1 89992784 89992925 -107202507 - B1_Mm SINE Alu -3 144 10 9 1271 741 286 247 9 chr1 89993451 89993916 -107201516 - Lx9 LINE L1 0 7644 7069 9 1271 216 0 0 0 chr1 89994106 89994130 -107201302 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 9 1271 263 104 21 0 chr1 89995532 89995580 -107199852 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1271 603 152 0 0 chr1 89995917 89996029 -107199403 + (TG)n Simple_repeat Simple_repeat 1 112 0 9 1271 186 268 18 0 chr1 89996635 89996691 -107198741 - L2b LINE L2 -2 3373 3317 9 1271 235 268 14 0 chr1 89996871 89996942 -107198490 + (TCCA)n Simple_repeat Simple_repeat 4 75 0 9 1271 195 188 0 0 chr1 89996945 89996993 -107198439 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 9 1271 336 344 0 0 chr1 89996998 89997126 -107198306 + (TG)n Simple_repeat Simple_repeat 1 128 0 9 1271 500 318 66 30 chr1 89997128 89997326 -107198106 - B4A SINE B4 0 292 88 9 1271 774 322 32 69 chr1 89997720 89998097 -107197335 + MTE2a LTR MaLR 8 370 -9 9 1271 351 0 0 0 chr1 89998700 89998739 -107196693 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1271 1438 161 108 7 chr1 89999172 89999441 -107195991 + RMER1A Other Other 722 1017 -13 9 1271 356 307 13 81 chr1 90000189 90000338 -107195094 + MER21B LTR ERV1 219 357 -506 1 1271 1900 150 11 54 chr1 90001104 90001477 -107193955 - ORR1B2 LTR MaLR -8 359 3 2 1271 289 358 21 26 chr1 90001742 90001934 -107193498 + Charlie1b DNA MER1_type 85 275 -248 3 1271 549 272 63 24 chr1 90002223 90002430 -107193002 - B3 SINE B2 0 216 2 4 1271 561 217 8 8 chr1 90002433 90002554 -107192878 - ID_B1 SINE B4 -2 222 102 5 1271 240 259 12 58 chr1 90005167 90005253 -107190179 + ID4_ SINE ID 2 83 0 6 1271 1155 114 0 0 chr1 90005293 90005468 -107189964 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 7 1271 319 226 18 36 chr1 90005589 90005699 -107189733 + GA-rich Low_complexity Low_complexity 1 108 0 8 1271 527 259 118 30 chr1 90006166 90006544 -107188888 - MTC LTR MaLR 0 419 4 9 1271 1101 281 125 37 chr1 90006629 90007221 -107188211 - L1MB7 LINE L1 -193 5991 5348 1 1271 221 290 87 130 chr1 90007526 90007756 -107187676 - B4 SINE B4 -66 226 7 1 1271 624 277 26 47 chr1 90007901 90008094 -107187338 - B3A SINE B2 -17 199 11 1 1271 317 259 24 0 chr1 90008082 90008167 -107187265 - B3A SINE B2 -103 95 9 1 1271 356 255 131 19 chr1 90008175 90008335 -107187097 - L1MB7 LINE L1 -1734 4412 4235 1 1271 8486 12 0 0 chr1 90008341 90009275 -107186157 - L1Md_A LINE L1 0 6582 5649 1 1271 1722 118 49 58 chr1 90009297 90009622 -107185810 - RLTRETN_Mm LTR ERVK 0 322 1 1 1271 9323 142 42 40 chr1 90009622 90011618 -107183814 - MMETn-int LTR ERVK -154 7252 5531 1 1271 17482 132 64 64 chr1 90011616 90015794 -107179638 - MMETn-int LTR ERVK -2295 5111 2 1 1271 1947 113 9 56 chr1 90015795 90016133 -107179299 - RLTRETN_Mm LTR ERVK 0 322 1 1 1271 563 71 0 12 chr1 90016192 90016278 -107179154 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 1 1271 315 339 122 0 chr1 90016497 90016677 -107178755 - L1M5 LINE L1 -499 5665 5464 1 1271 263 71 24 0 chr1 90016929 90016971 -107178461 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1271 500 159 227 0 chr1 90016972 90017104 -107178328 - B3A SINE B2 -36 162 1 1 1271 2203 167 60 29 chr1 90018698 90019149 -107176283 + RMER4A LTR ERVK 1 465 -1 2 1271 1327 212 6 16 chr1 90020831 90021143 -107174289 + MTD LTR MaLR 111 419 0 2 1271 21 36 0 0 chr1 90021454 90021482 -107173950 + AT_rich Low_complexity Low_complexity 1 28 0 2 1271 476 249 124 22 chr1 90021522 90021707 -107173725 + B3 SINE B2 1 204 -12 2 1271 746 216 0 0 chr1 90021804 90021952 -107173480 + B1_Mur4 SINE Alu 2 149 -1 2 1271 291 328 83 16 chr1 90022404 90022596 -107172836 + L1M4 LINE L1 5538 5742 -432 2 1271 706 289 144 16 chr1 90024895 90025264 -107170168 - Lx9 LINE L1 0 7644 7229 2 1271 216 0 0 0 chr1 90025552 90025576 -107169856 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 2 1271 1368 88 0 0 chr1 90025912 90026163 -107169269 + (TC)n Simple_repeat Simple_repeat 1 251 0 2 1271 218 196 127 108 chr1 90026721 90026887 -107168545 + B2_Mm2 SINE B2 1 169 -26 2 1271 564 121 0 0 chr1 90027549 90027640 -107167792 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1271 27 29 0 0 chr1 90027822 90027856 -107167576 + AT_rich Low_complexity Low_complexity 1 34 0 3 1271 203 250 18 0 chr1 90028258 90028314 -107167118 - L2b LINE L2 -2 3373 3317 3 1271 258 250 14 0 chr1 90028493 90028612 -107166820 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 3 1271 324 336 0 0 chr1 90028618 90028740 -107166692 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 1271 514 281 70 43 chr1 90028742 90028928 -107166504 - B4A SINE B4 0 292 102 3 1271 783 320 35 69 chr1 90029335 90029711 -107165721 + MTE2a LTR MaLR 8 370 -9 3 1271 1327 181 114 4 chr1 90030740 90031012 -107164420 + RMER1A Other Other 728 1029 -1 3 1271 356 307 13 81 chr1 90031746 90031895 -107163537 + MER21B LTR ERV1 219 357 -506 3 1271 1879 167 11 28 chr1 90032661 90033024 -107162408 - ORR1B2 LTR MaLR -8 359 3 3 1271 369 344 62 31 chr1 90033222 90033480 -107161952 + Charlie1b DNA MER1_type 10 275 -248 4 1271 619 298 39 0 chr1 90033783 90033991 -107161441 - B3 SINE B2 0 216 1 4 1271 543 217 8 8 chr1 90033993 90034114 -107161318 - ID_B1 SINE B4 -2 222 102 4 1271 359 225 79 72 chr1 90034114 90034132 -107161300 - B1F2 SINE Alu 0 149 10 4 1271 260 214 129 0 chr1 90034459 90034529 -107160903 + MLT1C LTR MaLR 90 168 -299 4 1271 248 266 0 60 chr1 90036702 90036786 -107158646 + ID4_ SINE ID 5 83 0 4 1271 722 109 8 0 chr1 90036794 90036913 -107158519 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 4 1271 309 238 19 29 chr1 90037038 90037142 -107158290 + GA-rich Low_complexity Low_complexity 1 103 0 4 1271 860 284 73 30 chr1 90037608 90038007 -107157425 - MTD LTR MaLR 0 419 4 4 1271 1155 275 118 32 chr1 90038100 90038686 -107156746 - L1MB5 LINE L1 -191 5983 5348 4 1271 341 319 59 77 chr1 90039002 90039223 -107156209 - B4A SINE B4 -71 221 5 5 1271 701 253 5 33 chr1 90039383 90039567 -107155865 - B3A SINE B2 -16 182 4 5 1271 344 299 101 11 chr1 90039576 90039765 -107155667 - L1MB5 LINE L1 -1756 4390 4185 4 1271 1051 83 6 6 chr1 90039783 90039953 -107155479 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 5 1271 314 309 151 33 chr1 90040167 90040532 -107154900 - L1MD LINE L1 -577 5665 5258 5 1271 686 78 10 0 chr1 90040599 90040701 -107154731 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1271 545 158 218 0 chr1 90040702 90040835 -107154597 - B3A SINE B2 -36 162 1 5 1271 2149 155 71 38 chr1 90042431 90042881 -107152551 + RMER4A LTR ERVK 1 465 -1 5 1271 489 47 0 0 chr1 90044432 90044496 -107150936 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 5 1271 860 111 82 0 chr1 90044496 90044631 -107150801 - B1_Mm SINE Alu 0 147 2 5 1271 1397 94 15 0 chr1 90044648 90044850 -107150582 - L1Md_F2 LINE L1 0 6582 6378 5 1271 1307 215 6 16 chr1 90044983 90045295 -107150137 + MTD LTR MaLR 111 419 0 6 1271 483 250 117 25 chr1 90045675 90045872 -107149560 + B3 SINE B2 1 215 -1 6 1271 664 228 0 32 chr1 90045959 90046113 -107149319 + B1_Mur4 SINE Alu 2 150 0 6 1271 1773 112 7 25 chr1 90046144 90046429 -107149003 + L1Md_F2 LINE L1 6301 6580 -2 6 1272 277 319 88 21 chr1 90046662 90046854 -107148578 + L1M3 LINE L1 5538 5742 -438 6 1272 627 284 105 22 chr1 90049201 90049525 -107145907 - Lx9 LINE L1 -20 7624 7274 6 1272 266 219 216 14 chr1 90049589 90049663 -107145769 - Lx8 LINE L1 -453 7020 6932 6 1272 450 148 0 0 chr1 90050215 90050316 -107145116 + (TC)n Simple_repeat Simple_repeat 1 101 0 6 1272 366 61 0 0 chr1 90050316 90050365 -107145067 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1272 1397 211 77 50 chr1 90051263 90051589 -107143843 + MTD LTR MaLR 6 353 -66 6 1272 1864 103 8 124 chr1 90051589 90051953 -107143479 - RLTRETN_Mm LTR ERVK 0 322 1 7 1272 1397 211 77 50 chr1 90051953 90051983 -107143449 + MTD LTR MaLR 354 381 -38 6 1272 1545 175 103 88 chr1 90051983 90052371 -107143061 - ORR1B1 LTR MaLR 0 394 1 7 1272 1397 211 77 50 chr1 90052371 90052416 -107143016 + MTD LTR MaLR 382 419 0 6 1272 240 59 0 0 chr1 90053648 90053682 -107141750 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 7 1272 1136 76 0 0 chr1 90053687 90053832 -107141600 - B1_Mus1 SINE Alu 0 148 4 7 1272 639 26 0 0 chr1 90054130 90054207 -107141225 + (CCAA)n Simple_repeat Simple_repeat 3 79 0 7 1272 374 241 101 20 chr1 90054976 90055124 -107140308 + B3 SINE B2 1 160 -56 7 1272 258 32 0 0 chr1 90055466 90055497 -107139935 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1272 269 216 81 65 chr1 90055879 90056003 -107139429 - RLTR13D3 LTR ERVK -47 1067 942 7 1272 2906 44 9 0 chr1 90056070 90056413 -107139019 - ORR1A1 LTR MaLR 0 346 1 7 1272 9259 84 7 0 chr1 90056610 90058588 -107136844 - L1_Mus1 LINE L1 0 6567 4575 7 1272 1262 86 0 79 chr1 90058793 90058995 -107136437 - B2_Mm2 SINE B2 -7 188 3 8 1272 238 158 0 0 chr1 90059316 90059354 -107136078 - RLTR13D3 LTR ERVK -1076 38 1 8 1272 374 236 8 0 chr1 90059378 90059501 -107135931 + (TG)n Simple_repeat Simple_repeat 1 124 0 8 1272 249 315 0 0 chr1 90059519 90059592 -107135840 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 1272 284 300 113 0 chr1 90059743 90059893 -107135539 + MLT1C LTR MaLR 2 168 -299 8 1272 335 258 0 62 chr1 90060370 90060498 -107134934 + GA-rich Low_complexity Low_complexity 4 123 0 8 1272 189 0 0 0 chr1 90060605 90060626 -107134806 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 8 1272 3864 48 0 25 chr1 90060681 90061170 -107134262 - L1Md_F2 LINE L1 -5 6577 6101 8 1272 787 304 70 30 chr1 90061312 90061712 -107133720 - MTD LTR MaLR 0 419 4 8 1272 1094 84 0 0 chr1 90061715 90061851 -107133581 + B1_Mus2 SINE Alu 2 137 -10 8 1272 234 0 0 0 chr1 90061851 90061877 -107133555 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1272 896 184 45 28 chr1 90063609 90063788 -107131644 - B3 SINE B2 0 216 35 9 1272 506 280 91 47 chr1 90064042 90064316 -107131116 - L1_Mur3 LINE L1 -1386 4494 4209 9 1272 220 159 23 0 chr1 90064379 90064423 -107131009 - RSINE1 SINE B4 -87 78 34 9 1272 1267 277 61 93 chr1 90064426 90064500 -107130932 - L1_Mur3 LINE L1 -1660 4220 4162 9 1272 1272 58 81 6 chr1 90064500 90064674 -107130758 - B2_Mm2 SINE B2 -6 189 3 9 1272 1267 277 61 93 chr1 90064674 90065186 -107130246 - L1_Mur3 LINE L1 -1719 4161 3662 9 1272 196 30 61 0 chr1 90065186 90065219 -107130213 + (TTG)n Simple_repeat Simple_repeat 2 36 0 9 1272 1267 237 48 44 chr1 90065219 90065389 -107130043 - L1_Mur3 LINE L1 -2219 3661 3496 9 1272 3764 244 87 82 chr1 90066099 90066207 -107129225 - Lx9 LINE L1 -20 7624 7513 9 1272 297 0 0 0 chr1 90066207 90066240 -107129192 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1272 3764 246 87 81 chr1 90066240 90067742 -107127690 - Lx9 LINE L1 -132 7512 5902 9 1272 2727 61 9 9 chr1 90067743 90068088 -107127344 - IAPLTR4 LTR ERVK 0 345 1 9 1272 4454 206 62 9 chr1 90068094 90069170 -107126262 - IAPLTR3-int LTR ERVK -781 6899 5747 9 1272 660 265 50 53 chr1 90069420 90069703 -107125729 - IAPLTR3-int LTR ERVK -797 5745 5464 9 1272 2186 201 19 18 chr1 90069980 90070543 -107124889 - MMERVK10C-int LTR ERVK -1076 5745 5098 9 1272 838 85 17 8 chr1 90070678 90070797 -107124635 - MMERVK10C-int LTR ERVK -2932 4649 4530 9 1272 534 191 15 2 chr1 90070809 90070930 -107124502 - MMERVK10C-int LTR ERVK -2380 2464 2357 9 1272 6957 107 50 6 chr1 90070935 90072307 -107123125 - ETnERV3-int LTR ERVK -3135 4271 2732 9 1272 363 256 0 55 chr1 90072316 90072407 -107123025 - ETnERV3-int LTR ERVK -4867 2539 2454 9 1272 450 246 85 0 chr1 90072420 90072538 -107122894 - RMER16-int LTR ERVK -5077 1060 933 1 1272 1356 206 108 53 chr1 90072537 90073025 -107122407 - RMER16-int LTR ERVK -4783 623 251 1 1272 419 127 7 157 chr1 90073134 90073274 -107122158 - MMERVK10C-int LTR ERVK -6629 952 834 1 1272 387 185 16 63 chr1 90073243 90073370 -107122062 - IAPLTR3-int LTR ERVK -5867 954 834 1 1272 477 226 17 34 chr1 90073370 90073489 -107121943 - IAPLTR3-int LTR ERVK -6704 117 1 1 1272 2721 61 9 9 chr1 90073489 90073834 -107121598 - IAPLTR4 LTR ERVK 0 345 1 1 1272 466 212 204 15 chr1 90073834 90074010 -107121422 - Lx9 LINE L1 -1738 5906 5697 1 1272 605 212 86 14 chr1 90074048 90074187 -107121245 - B1_Mur1 SINE Alu 0 149 1 1 1272 317 306 22 0 chr1 90075049 90075183 -107120249 - L1M2 LINE L1 -936 5207 5071 1 1272 1523 248 30 68 chr1 90076598 90077129 -107118303 - RMER5 LTR ERV1 0 534 24 1 1272 217 139 28 0 chr1 90077129 90077165 -107118267 + C-rich Low_complexity Low_complexity 1 37 0 1 1272 23 0 0 0 chr1 90078101 90078124 -107117308 + AT_rich Low_complexity Low_complexity 1 23 0 1 1272 1451 199 139 9 chr1 90078230 90078560 -107116872 - ORR1D1 LTR MaLR 0 374 2 1 1272 616 154 0 22 chr1 90078775 90078914 -107116518 + (CATA)n Simple_repeat Simple_repeat 3 138 0 1 1272 541 317 33 42 chr1 90078970 90079276 -107116156 - L1MA4A LINE L1 -406 5897 5595 1 1272 286 244 55 0 chr1 90079282 90079379 -107116053 - PB1D9 SINE Alu 0 120 19 1 1272 977 279 122 28 chr1 90079390 90080169 -107115263 - L1MA4A LINE L1 -694 5606 4606 1 1272 240 327 88 72 chr1 90080325 90080631 -107114801 - RLTR12B LTR ERVK -215 313 3 1 1272 3774 286 76 59 chr1 90080635 90080976 -107114456 - L1MA4A LINE L1 -1475 4668 4283 1 1272 267 31 0 0 chr1 90080983 90081015 -107114417 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1272 1109 63 0 27 chr1 90081015 90081154 -107114278 - B1_Mus2 SINE Alu -8 139 2 1 1272 3774 286 76 59 chr1 90081154 90082961 -107112471 - L1MA4A LINE L1 -1861 4282 2482 1 1272 840 165 11 11 chr1 90084233 90084411 -107111021 + CT-rich Low_complexity Low_complexity 3 180 0 1 1272 4587 148 19 92 chr1 90085482 90086455 -107108977 - RLTR13D6 LTR ERVK 0 902 1 1 1272 1838 182 46 18 chr1 90087006 90087397 -107108035 + MTB_Mm LTR MaLR 1 402 -5 1 1272 289 333 107 0 chr1 90090369 90090528 -107104904 - MLT1D LTR MaLR -323 182 7 1 1272 1595 191 56 25 chr1 90091723 90091907 -107103525 - ORR1D1 LTR MaLR 0 374 178 1 1272 984 79 20 0 chr1 90091907 90092059 -107103373 + (GA)n Simple_repeat Simple_repeat 2 156 0 1 1272 1595 191 56 25 chr1 90092059 90092234 -107103198 - ORR1D1 LTR MaLR -197 177 4 1 1272 290 87 0 21 chr1 90093434 90093481 -107101951 + (CCCCCT)n Simple_repeat Simple_repeat 1 46 0 1 1272 7685 83 4 0 chr1 90094276 90095817 -107099615 + L1_Mus1 LINE L1 5021 6567 0 1 1272 225 258 0 61 chr1 90098547 90098613 -107096819 - MER33 DNA MER1_type -250 74 13 1 1272 288 253 21 21 chr1 90098993 90099090 -107096342 + GA-rich Low_complexity Low_complexity 2 98 0 1 1272 414 295 14 35 chr1 90099465 90099609 -107095823 - RSINE1 SINE B4 -10 155 15 1 1272 509 248 46 0 chr1 90099774 90099883 -107095549 + B1_Mur1 SINE Alu 1 114 -35 1 1272 360 294 52 121 chr1 90100245 90100419 -107095013 - B4A SINE B4 0 292 131 1 1272 318 310 82 7 chr1 90100864 90101010 -107094422 + MLT1D LTR MaLR 340 496 -9 1 1272 229 294 33 0 chr1 90102561 90102653 -107092779 + CT-rich Low_complexity Low_complexity 2 96 0 1 1272 265 267 39 26 chr1 90102659 90102736 -107092696 - PB1D7 SINE Alu -25 95 18 1 1272 539 264 173 14 chr1 90102980 90103282 -107092150 - Charlie1b DNA MER1_type -177 346 1 1 1272 3364 65 29 70 chr1 90104673 90105187 -107090245 + MT2_Mm LTR ERVL 1 493 0 1 1272 888 271 39 39 chr1 90106679 90106963 -107088469 + B4 SINE B4 8 291 -1 1 1272 7913 45 26 0 chr1 90106986 90108068 -107087364 - L1Md_F3 LINE L1 0 6584 5475 1 1272 233 183 17 0 chr1 90111841 90111901 -107083531 + (TTA)n Simple_repeat Simple_repeat 3 63 0 1 1272 21 57 0 0 chr1 90113096 90113131 -107082301 + AT_rich Low_complexity Low_complexity 1 35 0 1 1272 249 262 21 97 chr1 90113236 90113329 -107082103 + B3A SINE B2 1 86 -112 1 1272 225 261 21 93 chr1 90113335 90113432 -107082000 + PB1D7 SINE Alu 30 119 -1 1 1272 201 74 0 0 chr1 90113537 90113564 -107081868 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1272 323 280 57 48 chr1 90113652 90113757 -107081675 + PB1D10 SINE Alu 7 112 -5 1 1272 465 206 292 35 chr1 90113818 90113989 -107081443 + B3 SINE B2 1 215 -1 1 1272 407 273 102 97 chr1 90114104 90114456 -107080976 - ORR1E LTR MaLR 0 408 4 1 1272 327 104 0 0 chr1 90114547 90114595 -107080837 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1272 21 0 0 0 chr1 90115124 90115145 -107080287 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 253 219 55 0 chr1 90116060 90116133 -107079299 + MTEa LTR MaLR 303 379 0 1 1272 270 365 76 76 chr1 90116177 90116533 -107078899 - ORR1E LTR MaLR 0 359 4 1 1272 408 296 0 73 chr1 90116591 90116715 -107078717 + B1_Mus1 SINE Alu 26 140 -8 1 1272 678 309 156 91 chr1 90116685 90117333 -107078099 - MTE-int LTR MaLR -84 1496 807 1 1272 1883 310 18 22 chr1 90117419 90118095 -107077337 - Lx8 LINE L1 -333 7140 6468 1 1272 569 309 19 14 chr1 90118117 90118327 -107077105 - RMER15-int LTR ERVL -564 4435 4225 1 1272 1955 239 64 16 chr1 90118332 90118974 -107076458 + L1_Mur3 LINE L1 4303 4975 -905 1 1272 264 260 209 20 chr1 90119022 90119175 -107076257 - MTE-int LTR MaLR -1398 182 1 1 1272 453 19 0 0 chr1 90119481 90119535 -107075897 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1272 3251 79 0 10 chr1 90119535 90119943 -107075489 - MTB_Mm LTR MaLR -3 404 1 1 1272 731 219 116 0 chr1 90119946 90120110 -107075322 - B3 SINE B2 -30 186 4 1 1272 258 309 112 16 chr1 90120265 90120390 -107075042 + MLT1H LTR MaLR 138 274 -275 1 1272 240 35 0 0 chr1 90120929 90120958 -107074474 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1272 521 287 46 8 chr1 90120963 90121093 -107074339 - B4A SINE B4 -1 291 157 1 1272 235 184 0 0 chr1 90121093 90121131 -107074301 + RLTR13D3 LTR ERVK 1 38 -1076 1 1272 237 158 0 0 chr1 90121580 90121618 -107073814 + B2_Mm2 SINE B2 1 38 -157 1 1272 381 244 51 51 chr1 90121867 90122036 -107073396 + RLTR13D3 LTR ERVK 849 1072 -42 1 1272 495 303 32 19 chr1 90122042 90122200 -107073232 - B4A SINE B4 -132 160 1 1 1272 1615 190 80 121 chr1 90122290 90122575 -107072857 - MTD LTR MaLR 0 419 116 1 1272 1024 235 10 5 chr1 90122575 90122776 -107072656 + B3 SINE B2 4 205 -11 1 1272 1615 190 80 121 chr1 90122776 90122927 -107072505 - MTD LTR MaLR -304 115 1 1 1272 650 285 148 21 chr1 90124034 90124317 -107071115 - MLT1A LTR MaLR -2 652 240 1 1272 664 299 74 77 chr1 90125253 90125427 -107070005 - MLT1A LTR MaLR -6 368 190 1 1272 854 118 322 23 chr1 90125427 90125601 -107069831 + URR1A DNA MER1_type 1 226 0 1 1272 664 299 74 77 chr1 90125601 90125792 -107069640 - MLT1A LTR MaLR -185 189 4 1 1272 370 320 24 8 chr1 90125814 90125960 -107069472 - MER74A LTR ERVL -429 193 6 1 1272 1133 235 69 97 chr1 90126178 90126466 -107068966 + B4 SINE B4 13 292 0 1 1272 386 370 87 26 chr1 90127689 90128069 -107067363 - L2b LINE L2 -48 3327 2925 1 1272 1625 197 188 3 chr1 90129061 90129413 -107066019 - MTD LTR MaLR -2 417 1 1 1272 245 264 162 120 chr1 90130297 90130439 -107064993 - MIR SINE MIR -81 181 34 1 1272 422 278 0 49 chr1 90132348 90132450 -107062982 + B3 SINE B2 119 215 -1 1 1272 912 271 58 8 chr1 90132741 90133001 -107062431 + B4A SINE B4 1 273 -19 1 1272 456 67 0 0 chr1 90133008 90133068 -107062364 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1272 260 361 98 0 chr1 90135018 90135151 -107060281 - MLT2C1 LTR ERVL -251 146 1 1 1272 186 43 0 0 chr1 90135824 90135847 -107059585 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 1 1272 322 248 147 10 chr1 90138495 90138597 -107056835 + L1M4 LINE L1 4457 4572 -1574 1 1272 204 257 185 28 chr1 90139820 90139928 -107055504 + L2b LINE L2 3251 3375 0 1 1272 468 325 7 26 chr1 90140169 90140324 -107055108 - B4A SINE B4 -6 286 135 1 1272 942 268 104 37 chr1 90141007 90141275 -107054157 + B4A SINE B4 1 286 -6 1 1272 506 313 52 43 chr1 90143908 90144118 -107051314 - MLT1J1 LTR MaLR -2 442 231 1 1272 293 0 27 0 chr1 90144283 90144320 -107051112 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1272 315 104 0 0 chr1 90144778 90144826 -107050606 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1272 2273 140 73 0 chr1 90147199 90147557 -107047875 - ORR1C2 LTR MaLR 0 384 1 1 1272 537 261 75 75 chr1 90148407 90148424 -107047008 + B4 SINE B4 73 218 -74 1 1272 1095 38 0 8 chr1 90148424 90148558 -107046874 + B1_Mm SINE Alu 7 139 -8 1 1272 324 64 0 0 chr1 90148558 90148605 -107046827 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1272 537 261 75 75 chr1 90148605 90148652 -107046780 + B4 SINE B4 219 270 -22 1 1272 502 306 83 44 chr1 90148626 90148855 -107046577 - MTD LTR MaLR -180 239 2 1 1272 768 232 0 47 chr1 90149466 90149638 -107045794 - B3A SINE B2 -34 164 1 1 1272 558 0 0 0 chr1 90149790 90149852 -107045580 + (AGGTG)n Simple_repeat Simple_repeat 3 64 0 1 1272 315 311 86 9 chr1 90150195 90150350 -107045082 - MLT1E LTR MaLR -74 579 427 1 1272 462 236 17 60 chr1 90150755 90150872 -107044560 - ID_B1 SINE B4 -26 198 87 1 1272 270 0 0 0 chr1 90151109 90151139 -107044293 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1272 182 37 37 0 chr1 90153454 90153481 -107041951 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1 1272 341 300 47 64 chr1 90153613 90153784 -107041648 - MLT1A LTR MaLR -206 168 1 1 1272 362 259 74 64 chr1 90155366 90155568 -107039864 - Charlie5 DNA MER1_type -20 2604 2401 1 1272 252 0 0 0 chr1 90155661 90155689 -107039743 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1272 186 118 0 0 chr1 90159150 90159184 -107036248 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 1 1272 424 215 54 28 chr1 90160569 90160683 -107034749 + PB1D10 SINE Alu 2 127 0 1 1272 359 283 111 19 chr1 90161130 90161238 -107034194 + ID_B1 SINE B4 107 224 0 1 1272 651 185 125 36 chr1 90163568 90163736 -107031696 + B3A SINE B2 1 183 -15 1 1272 688 262 65 72 chr1 90165236 90165512 -107029920 + MTD LTR MaLR 1 274 -145 2 1272 2189 150 53 0 chr1 90166909 90167289 -107028143 + RLTR9D LTR ERVK 1 400 -3 2 1272 3509 28 4 132 chr1 90167368 90167868 -107027564 + RLTR10C LTR ERVK 1 436 0 2 1272 512 250 15 45 chr1 90167868 90167900 -107027532 + B3A SINE B2 4 35 -163 2 1272 1662 155 82 0 chr1 90167900 90168203 -107027229 + ORR1A4 LTR MaLR 1 328 -1 2 1272 512 250 15 45 chr1 90168203 90168304 -107027128 + B3A SINE B2 36 132 -66 2 1272 633 242 8 0 chr1 90168620 90168744 -107026688 - B1_Mur1 SINE Alu -8 141 17 2 1272 1188 48 7 7 chr1 90169734 90169880 -107025552 + B1_Mus1 SINE Alu 3 148 0 2 1272 350 226 0 0 chr1 90170703 90170765 -107024667 + B1F SINE Alu 83 144 -5 2 1272 443 222 8 57 chr1 90175096 90175220 -107020212 + MTEb LTR MaLR 250 367 -12 2 1272 32 43 0 0 chr1 90175445 90175491 -107019941 + AT_rich Low_complexity Low_complexity 1 46 0 2 1272 596 290 49 11 chr1 90176155 90176340 -107019092 + B3A SINE B2 3 194 -4 2 1273 1382 46 23 0 chr1 90177580 90177753 -107017679 - B2_Mm2 SINE B2 -14 181 5 2 1273 478 221 129 8 chr1 90177888 90178020 -107017412 - ORR1D1 LTR MaLR -13 406 259 2 1273 754 190 148 23 chr1 90178070 90178260 -107017172 - ORR1D1 LTR MaLR -136 234 12 2 1273 180 111 0 0 chr1 90178260 90178287 -107017145 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1273 1107 76 7 7 chr1 90178287 90178432 -107017000 - B1_Mus2 SINE Alu 0 147 3 2 1273 415 369 165 18 chr1 90178747 90179081 -107016351 + Arthur1 DNA Tip100 324 706 -3241 2 1273 205 250 0 0 chr1 90179161 90179205 -107016227 + GA-rich Low_complexity Low_complexity 3 46 0 2 1273 215 143 0 39 chr1 90179217 90179268 -107016164 + G-rich Low_complexity Low_complexity 2 50 0 2 1273 258 324 191 21 chr1 90179939 90180128 -107015304 + MIRb SINE MIR 41 261 -7 2 1273 704 203 45 74 chr1 90181924 90182126 -107013306 - B3A SINE B2 -2 196 1 2 1273 599 292 5 68 chr1 90182869 90183060 -107012372 + ID_B1 SINE B4 44 222 -2 2 1273 198 0 0 0 chr1 90183967 90183989 -107011443 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1273 557 301 16 49 chr1 90184231 90184416 -107011016 + B3A SINE B2 20 198 0 2 1273 656 208 134 23 chr1 90184981 90185153 -107010279 + MTD LTR MaLR 229 419 0 2 1273 1485 284 71 44 chr1 90185519 90185998 -107009434 - Tigger7 DNA MER2_type -1920 571 80 2 1273 655 165 15 0 chr1 90186064 90186197 -107009235 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 2 1273 629 261 62 5 chr1 90186235 90186428 -107009004 - Ricksha_c DNA MuDR -1260 788 585 2 1273 261 75 0 0 chr1 90186438 90186478 -107008954 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 2 1273 414 0 0 0 chr1 90186481 90186527 -107008905 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1273 232 246 17 34 chr1 90186541 90186600 -107008832 - MLT2B3 LTR ERVL -458 96 39 2 1273 733 164 214 17 chr1 90186601 90186788 -107008644 - B3 SINE B2 -6 210 9 2 1273 215 61 30 0 chr1 90186862 90186895 -107008537 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1273 569 258 6 90 chr1 90186902 90187068 -107008364 - B3A SINE B2 -9 189 38 2 1273 222 300 100 105 chr1 90187154 90187344 -107008088 - MIR3 SINE MIR -65 197 4 2 1273 251 157 20 0 chr1 90187588 90187639 -107007793 + CT-rich Low_complexity Low_complexity 1 52 0 2 1273 877 238 63 11 chr1 90187650 90187841 -107007591 - ID_B1 SINE B4 -23 201 1 2 1273 1156 80 0 0 chr1 90188700 90188850 -107006582 - L1_Mus4 LINE L1 -437 6199 6050 2 1273 2626 102 0 27 chr1 90188850 90189254 -107006178 + L1_Mus4 LINE L1 6236 6628 -8 2 1273 855 187 57 31 chr1 90189616 90189809 -107005623 + B3A SINE B2 1 198 0 2 1273 410 193 57 0 chr1 90189835 90189923 -107005509 + ID_B1 SINE B4 121 213 -11 2 1273 848 161 0 0 chr1 90189940 90190070 -107005362 - B1_Mur4 SINE Alu -10 140 11 2 1273 390 224 0 101 chr1 90189975 90190084 -107005348 - MT2B LTR ERVL -344 257 160 2 1273 235 290 0 30 chr1 90190084 90190105 -107005327 - ORR1B1-int LTR MaLR -755 749 624 2 1273 230 176 20 0 chr1 90191154 90191205 -107004227 + GA-rich Low_complexity Low_complexity 5 56 0 2 1273 3114 42 58 0 chr1 90191616 90191994 -107003438 + MTB LTR MaLR 1 400 0 2 1273 21 0 0 0 chr1 90192133 90192154 -107003278 + AT_rich Low_complexity Low_complexity 1 21 0 2 1273 395 294 48 24 chr1 90192773 90192899 -107002533 - B4 SINE B4 -24 268 82 2 1273 2124 61 106 26 chr1 90192899 90193202 -107002230 + ORR1A2 LTR MaLR 1 327 0 2 1273 395 340 24 53 chr1 90193202 90193373 -107002059 - B4 SINE B4 -118 174 16 2 1273 182 359 58 10 chr1 90193440 90193544 -107001888 - L2a LINE L2 -42 3384 3276 2 1273 870 160 0 19 chr1 90193784 90194046 -107001386 + GA-rich Low_complexity Low_complexity 1 256 0 2 1273 459 0 0 0 chr1 90194421 90194472 -107000960 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1273 2116 174 3 47 chr1 90194735 90195122 -107000310 + RLTR14 LTR ERV1 11 380 -2 2 1273 329 340 36 9 chr1 90195290 90195400 -107000032 + MTEa LTR MaLR 28 140 -239 2 1273 819 214 152 8 chr1 90195547 90195730 -106999702 + B4A SINE B4 5 202 -90 2 1273 207 0 0 0 chr1 90195730 90195753 -106999679 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1273 819 214 152 8 chr1 90195753 90195819 -106999613 + B4A SINE B4 203 289 -3 2 1273 474 161 0 0 chr1 90196757 90196850 -106998582 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 2 1273 363 237 172 0 chr1 90196855 90196948 -106998484 - PB1D10 SINE Alu -8 109 1 2 1273 450 183 12 0 chr1 90196984 90197066 -106998366 - PB1D10 SINE Alu -34 83 1 2 1273 303 305 10 10 chr1 90197066 90197080 -106998352 - ID_B1 SINE B4 -60 164 69 2 1273 220 340 18 36 chr1 90197200 90197257 -106998175 + B4 SINE B4 31 85 -207 2 1273 215 325 23 11 chr1 90197257 90197344 -106998088 + B1F SINE Alu 1 88 -61 2 1273 350 295 118 49 chr1 90197889 90198092 -106997340 - ORR1E LTR MaLR -142 217 1 2 1273 343 211 122 31 chr1 90198544 90198642 -106996790 - HAL1-3A_ME LINE L1 -776 2082 1976 2 1273 250 234 11 125 chr1 90198687 90198775 -106996657 - B4 SINE B4 0 292 215 2 1273 635 346 110 22 chr1 90198789 90199335 -106996097 - Lx8 LINE L1 -6 7467 6874 2 1273 568 277 126 45 chr1 90199352 90199598 -106995834 - B4 SINE B4 -25 267 2 2 1273 353 322 50 45 chr1 90199979 90200158 -106995274 - MLT1B LTR MaLR -62 328 149 2 1273 1191 43 0 0 chr1 90200159 90200297 -106995135 + B1_Mm SINE Alu 1 138 -9 2 1273 301 0 0 64 chr1 90200297 90200344 -106995088 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1273 1064 272 36 11 chr1 90200445 90200724 -106994708 - B4A SINE B4 -4 288 3 2 1273 317 352 9 9 chr1 90200726 90200835 -106994597 - MLT1B LTR MaLR -281 109 1 2 1273 832 236 124 34 chr1 90202022 90202080 -106993352 - B4A SINE B4 0 292 230 2 1273 822 251 0 20 chr1 90202080 90202275 -106993157 - B3A SINE B2 -6 192 2 2 1273 832 236 124 34 chr1 90202275 90202396 -106993036 - B4A SINE B4 -63 229 93 2 1273 450 0 0 0 chr1 90202396 90202446 -106992986 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1273 832 236 124 34 chr1 90202446 90202532 -106992900 - B4A SINE B4 -200 92 3 2 1273 288 0 0 0 chr1 90204273 90204305 -106991127 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1273 312 91 0 0 chr1 90204305 90204349 -106991083 + (TGG)n Simple_repeat Simple_repeat 3 46 0 2 1273 726 231 7 0 chr1 90204351 90204494 -106990938 - B1F2 SINE Alu -1 148 5 2 1273 590 286 15 0 chr1 90205171 90205304 -106990128 + RSINE1 SINE B4 2 136 -29 2 1273 552 68 0 0 chr1 90205366 90205439 -106989993 + (TTCC)n Simple_repeat Simple_repeat 1 73 0 2 1273 1698 256 18 31 chr1 90205448 90205899 -106989533 - Lx6 LINE L1 0 7460 7016 2 1273 225 307 232 12 chr1 90206026 90206194 -106989238 + MIRb SINE MIR 38 242 -26 2 1273 954 158 163 0 chr1 90206537 90206727 -106988705 + URR1A DNA MER1_type 6 226 0 2 1273 594 93 0 0 chr1 90207652 90207738 -106987694 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1273 240 257 114 74 chr1 90208132 90208334 -106987098 - L1M6 LINE L1 -4740 1756 1547 2 1273 447 19 0 0 chr1 90210311 90210363 -106985069 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1273 292 214 270 20 chr1 90210384 90210484 -106984948 - B3 SINE B2 -91 125 1 2 1273 225 200 0 0 chr1 90212085 90212125 -106983307 - L1M5 LINE L1 -679 5765 5726 2 1273 303 28 0 0 chr1 90212171 90212207 -106983225 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1273 468 317 109 19 chr1 90212230 90212497 -106982935 - B4 SINE B4 -1 291 1 2 1273 434 263 152 45 chr1 90212509 90212732 -106982700 - Lx8 LINE L1 -1 7472 7226 2 1273 237 327 18 27 chr1 90214268 90214378 -106981054 - L2c LINE L2 -223 3164 3056 2 1273 485 340 26 7 chr1 90214964 90215118 -106980314 + RSINE1 SINE B4 2 158 -7 2 1273 677 12 0 12 chr1 90215118 90215201 -106980231 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1273 279 0 0 0 chr1 90216032 90216063 -106979369 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1273 565 326 11 22 chr1 90216111 90216296 -106979136 - Lx8 LINE L1 -250 7223 7041 2 1273 320 347 68 40 chr1 90216739 90216961 -106978471 - L1M5 LINE L1 -756 5390 5163 2 1273 222 37 0 0 chr1 90217185 90217212 -106978220 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1273 346 330 34 0 chr1 90218418 90218536 -106976896 + MER3 DNA MER1_type 74 195 -14 2 1273 813 114 0 0 chr1 90219095 90219218 -106976214 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 1273 1182 68 0 0 chr1 90219218 90219364 -106976068 - B1_Mus1 SINE Alu -2 146 1 2 1273 724 276 59 5 chr1 90223285 90223471 -106971961 - B3A SINE B2 -2 196 1 2 1273 22 0 0 0 chr1 90223486 90223508 -106971924 + AT_rich Low_complexity Low_complexity 1 22 0 2 1273 21 0 0 0 chr1 90223604 90223625 -106971807 + AT_rich Low_complexity Low_complexity 1 21 0 2 1273 290 339 76 28 chr1 90223819 90224107 -106971325 - L1MC4 LINE L1 0 8042 7741 3 1273 262 240 13 13 chr1 90224209 90224285 -106971147 - L1MC4 LINE L1 -329 7553 7478 3 1273 194 268 54 0 chr1 90224381 90224437 -106970995 - L2a LINE L2 -42 3384 3326 3 1273 710 208 8 0 chr1 90224442 90224567 -106970865 + RSINE1 SINE B4 3 128 -37 3 1273 207 0 0 0 chr1 90224629 90224652 -106970780 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1273 1090 161 6 39 chr1 90224960 90224975 -106970457 - URR1A DNA MER1_type -51 175 167 3 1273 2147 73 28 16 chr1 90224975 90225293 -106970139 - RLTRETN_Mm LTR ERVK 0 322 1 3 1273 1090 161 6 39 chr1 90225293 90225458 -106969974 - URR1A DNA MER1_type -60 166 1 3 1273 236 211 51 34 chr1 90225503 90225562 -106969870 + MT2B LTR ERVL 228 287 -314 3 1273 289 230 0 17 chr1 90225517 90225532 -106969900 + ORR1B1-int LTR MaLR 635 647 -862 3 1273 771 69 3 7 chr1 90225532 90225653 -106969779 + B1_Mus2 SINE Alu 1 118 -2 3 1273 21 57 0 0 chr1 90227030 90227065 -106968367 + AT_rich Low_complexity Low_complexity 1 35 0 3 1273 1067 89 38 12 chr1 90228514 90228674 -106966758 - B2_Mm2 SINE B2 -14 181 18 3 1273 605 318 92 37 chr1 90229511 90229570 -106965862 - L1MA7 LINE L1 -180 6009 5960 3 1273 456 19 0 0 chr1 90229570 90229623 -106965809 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1273 746 304 111 12 chr1 90229623 90230530 -106964902 - L1MA7 LINE L1 -230 5959 4962 3 1273 234 292 79 40 chr1 90230626 90230854 -106964578 - L1_Rod LINE L1 -4009 1838 1602 3 1273 261 0 0 0 chr1 90231414 90231443 -106963989 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1273 284 0 28 0 chr1 90231701 90231737 -106963695 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1273 2574 236 24 9 chr1 90231871 90232453 -106962979 - Lx8 LINE L1 -507 6966 6376 3 1273 237 312 25 0 chr1 90232473 90232553 -106962879 - Lx8 LINE L1 -1163 6310 6229 3 1273 180 176 75 38 chr1 90234723 90234776 -106960656 + L3 LINE CR1 923 977 -3512 3 1273 522 184 186 22 chr1 90236551 90236701 -106958731 - RLTR11A LTR ERVK -255 273 75 3 1273 663 37 0 0 chr1 90237010 90237092 -106958340 + (GGGAGA)n Simple_repeat Simple_repeat 3 84 0 3 1273 327 224 0 0 chr1 90237110 90237217 -106958215 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 1273 353 327 99 37 chr1 90237340 90237502 -106957930 + Lx8 LINE L1 7144 7315 -158 3 1273 228 238 0 0 chr1 90237536 90237599 -106957833 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1273 325 228 176 61 chr1 90237599 90237730 -106957702 + HAL1-3A_ME LINE L1 1976 2121 -737 3 1273 369 0 0 0 chr1 90237744 90237785 -106957647 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1273 1099 33 13 39 chr1 90238196 90238352 -106957080 + L1Md_F3 LINE L1 6432 6583 -1 3 1273 347 41 0 20 chr1 90238421 90238471 -106956961 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1273 229 303 45 0 chr1 90238474 90238540 -106956892 - Charlie4z DNA MER1_type -93 74 6 3 1273 772 213 44 0 chr1 90238573 90238709 -106956723 + B1_Mur2 SINE Alu 1 142 -7 3 1273 392 319 14 21 chr1 90238970 90239113 -106956319 - ORR1E LTR MaLR 0 379 237 3 1273 489 14 0 41 chr1 90239183 90239256 -106956176 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 3 1273 634 330 0 40 chr1 90239266 90239465 -106955967 - ORR1E LTR MaLR -168 191 1 3 1273 217 311 16 0 chr1 90240057 90240118 -106955314 + MIRb SINE MIR 123 184 -84 3 1273 690 272 6 12 chr1 90241154 90241325 -106954107 + MER63D DNA AcHobo 1 170 -891 3 1273 550 342 58 23 chr1 90241331 90241431 -106954001 + B4A SINE B4 1 111 -181 3 1273 351 0 0 0 chr1 90241431 90241470 -106953962 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1273 550 342 58 23 chr1 90241470 90241629 -106953803 + B4A SINE B4 112 269 -23 3 1273 288 258 0 0 chr1 90241676 90241773 -106953659 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1273 299 412 15 0 chr1 90241939 90242070 -106953362 + MER63D DNA AcHobo 250 382 -679 3 1273 181 329 56 14 chr1 90242482 90242553 -106952879 - MIRb SINE MIR -135 133 60 3 1273 663 67 0 0 chr1 90242562 90242651 -106952781 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 1273 294 381 71 7 chr1 90242676 90242816 -106952616 + MER5A DNA MER1_type 2 150 -39 3 1273 2759 131 7 9 chr1 90243006 90243430 -106952002 + Lx4A LINE L1 6636 7058 0 3 1273 35 0 0 0 chr1 90243430 90243465 -106951967 + AT_rich Low_complexity Low_complexity 1 35 0 3 1273 184 281 19 68 chr1 90243657 90243760 -106951672 + L2 LINE L2 2711 2808 -611 3 1273 682 226 0 14 chr1 90243907 90244046 -106951386 + B1F SINE Alu 13 149 0 3 1273 264 239 29 15 chr1 90245612 90245680 -106949752 + LTR16C LTR ERVL 415 483 -6 3 1273 369 373 59 105 chr1 90248264 90248635 -106946797 - ORR1E LTR MaLR -2 357 4 3 1273 1351 211 24 102 chr1 90248636 90249047 -106946385 + MTE2a LTR MaLR 1 379 0 3 1273 215 139 28 0 chr1 90249152 90249188 -106946244 + MIRc SINE MIR 118 154 -114 3 1273 301 239 89 89 chr1 90249188 90249312 -106946120 - ORR1E LTR MaLR 0 379 256 3 1273 420 278 121 34 chr1 90249340 90249489 -106945943 - ORR1E LTR MaLR -168 191 30 3 1273 523 317 0 6 chr1 90251427 90251608 -106943824 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1273 225 255 129 30 chr1 90252026 90252127 -106943305 - RMER15 LTR ERVL -162 413 303 3 1273 2137 123 25 0 chr1 90252255 90252572 -106942860 - ORR1A2 LTR MaLR -2 325 1 3 1273 228 282 67 76 chr1 90252862 90252981 -106942451 + MER117 DNA MER1_type 30 147 -50 3 1273 969 303 82 11 chr1 90253095 90253459 -106941973 - MLT1C LTR MaLR -36 431 42 3 1273 216 0 0 0 chr1 90254692 90254716 -106940716 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1273 2112 108 66 0 chr1 90255453 90255758 -106939674 - ORR1A3 LTR MaLR 0 326 2 3 1273 249 360 23 53 chr1 90255814 90255946 -106939486 - MER91B DNA Tip100 -59 131 4 3 1273 751 263 89 53 chr1 90256745 90257003 -106938429 + B4A SINE B4 2 274 -18 3 1273 492 72 0 0 chr1 90257003 90257072 -106938360 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1273 751 263 89 53 chr1 90257072 90257094 -106938338 + B4A SINE B4 275 292 0 3 1273 213 250 43 14 chr1 90258230 90258299 -106937133 + BC1_Mm scRNA scRNA 1 71 -81 3 1273 186 171 0 0 chr1 90258731 90258772 -106936660 + CT-rich Low_complexity Low_complexity 2 42 0 3 1273 901 222 75 15 chr1 90258840 90259041 -106936391 - ID_B1 SINE B4 -7 217 5 3 1273 296 213 33 0 chr1 90259984 90260045 -106935387 - BC1_Mm scRNA scRNA -76 76 14 3 1273 752 224 6 61 chr1 90260083 90260264 -106935168 - MTEa LTR MaLR -8 371 201 3 1273 296 167 0 14 chr1 90260264 90260337 -106935095 + GA-rich Low_complexity Low_complexity 1 72 0 3 1273 809 246 94 5 chr1 90260347 90260539 -106934893 - MTEa LTR MaLR -163 216 8 3 1273 489 270 313 37 chr1 90261102 90261402 -106934030 - MTD LTR MaLR -14 407 25 3 1273 3035 102 52 34 chr1 90261943 90262408 -106933024 - MT2C_Mm LTR ERVL -2 473 1 3 1273 1027 277 74 7 chr1 90262561 90262870 -106932562 - MTEb LTR MaLR -3 376 47 3 1273 671 258 57 87 chr1 90264023 90264409 -106931023 + ORR1E LTR MaLR 2 360 -14 3 1273 790 275 1 68 chr1 90264562 90264791 -106930641 - B3A SINE B2 0 216 6 3 1273 706 270 43 24 chr1 90264966 90265175 -106930257 + B3 SINE B2 3 215 -1 3 1273 22 0 0 0 chr1 90265259 90265281 -106930151 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 201 252 0 0 chr1 90265447 90265582 -106929850 + (TG)n Simple_repeat Simple_repeat 2 136 0 3 1273 478 256 59 15 chr1 90266675 90266810 -106928622 + B4A SINE B4 2 142 -150 3 1273 203 189 19 0 chr1 90266810 90266863 -106928569 + GA-rich Low_complexity Low_complexity 3 56 0 3 1273 261 0 0 0 chr1 90266970 90266999 -106928433 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1273 513 0 0 0 chr1 90266999 90267055 -106928377 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1273 291 307 87 9 chr1 90268502 90268617 -106926815 + MIR SINE MIR 96 219 -43 3 1273 695 270 34 20 chr1 90268626 90268830 -106926602 + ID_B1 SINE B4 1 207 -17 3 1273 232 258 32 0 chr1 90269363 90269425 -106926007 - L1M5 LINE L1 -464 5660 5597 3 1273 822 328 124 38 chr1 90271616 90272142 -106923290 - MTE-int LTR MaLR -27 1553 983 3 1273 757 289 64 26 chr1 90272938 90273205 -106922227 + B4A SINE B4 1 277 -15 3 1273 504 0 0 0 chr1 90273280 90273336 -106922096 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1273 198 302 11 95 chr1 90273339 90273434 -106921998 + L3 LINE CR1 4252 4338 -151 3 1273 330 154 0 0 chr1 90274194 90274272 -106921160 + CT-rich Low_complexity Low_complexity 1 78 0 3 1273 381 187 0 0 chr1 90274286 90274361 -106921071 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 3 1273 778 244 24 85 chr1 90274668 90274879 -106920553 - B3A SINE B2 0 198 1 3 1273 180 0 0 0 chr1 90277438 90277458 -106917974 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1273 853 183 45 154 chr1 90277796 90278042 -106917390 + MTE2a LTR MaLR 9 227 -152 3 1273 712 287 47 29 chr1 90278107 90278383 -106917049 - L1MA7 LINE L1 -314 5977 5697 3 1273 1634 284 88 17 chr1 90278986 90279677 -106915755 - L1M3 LINE L1 -1967 4173 3434 3 1273 606 311 0 0 chr1 90279731 90279882 -106915550 - RSINE1 SINE B4 -11 154 4 3 1273 1139 270 43 27 chr1 90279925 90280253 -106915179 - MER54B LTR ERVL -2 791 459 3 1273 346 254 94 26 chr1 90280287 90280404 -106915028 - L1M3 LINE L1 -2897 3246 3122 3 1273 24 32 0 0 chr1 90280892 90280923 -106914509 + AT_rich Low_complexity Low_complexity 1 31 0 3 1273 369 0 0 0 chr1 90281101 90281142 -106914290 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1273 441 0 0 0 chr1 90283508 90283557 -106911875 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1273 602 294 70 35 chr1 90283672 90283873 -106911559 + B4 SINE B4 84 291 -1 3 1273 448 290 0 6 chr1 90283877 90284054 -106911378 + (CA)n Simple_repeat Simple_repeat 2 177 0 3 1273 318 304 19 0 chr1 90284086 90284244 -106911188 + (CA)n Simple_repeat Simple_repeat 2 162 0 3 1273 39 50 0 0 chr1 90285032 90285092 -106910340 + AT_rich Low_complexity Low_complexity 1 60 0 3 1273 203 0 0 36 chr1 90286657 90286685 -106908747 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1273 2366 54 20 0 chr1 90286737 90287033 -106908399 - L1_Mus1 LINE L1 -2 6565 6264 3 1273 1223 218 134 7 chr1 90287896 90288187 -106907245 - ORR1D2 LTR MaLR 0 370 43 4 1273 1521 199 89 37 chr1 90288619 90288969 -106906463 + RMER1B Other Other 47 414 -652 4 1273 1559 292 115 17 chr1 90288940 90289292 -106906140 + RMER1A Other Other 1 389 -641 4 1273 441 0 0 0 chr1 90289292 90289341 -106906091 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1273 2599 225 39 56 chr1 90289341 90290320 -106905112 + RMER1B Other Other 1 1054 -12 4 1273 705 82 0 0 chr1 90291609 90291706 -106903726 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 1273 564 15 0 0 chr1 90292023 90292088 -106903344 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1273 1164 233 172 110 chr1 90293401 90293836 -106901596 + MT2A LTR ERVL 1 462 -71 4 1273 323 42 42 0 chr1 90293887 90293935 -106901497 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 4 1273 297 0 0 0 chr1 90293935 90293967 -106901465 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1273 495 0 0 0 chr1 90294463 90294518 -106900914 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1273 744 115 0 0 chr1 90295517 90295630 -106899802 + (TCCC)n Simple_repeat Simple_repeat 1 113 0 4 1273 1544 130 9 0 chr1 90296172 90296395 -106899037 - URR1B DNA MER1_type 0 225 1 4 1273 1170 117 0 0 chr1 90296974 90297153 -106898279 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1273 713 239 99 11 chr1 90297683 90297865 -106897567 - ID_B1 SINE B4 -21 203 6 4 1273 396 0 0 0 chr1 90297879 90297923 -106897509 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1273 338 240 92 0 chr1 90298755 90298841 -106896591 + B1F SINE Alu 12 105 -44 4 1273 298 211 93 43 chr1 90298920 90299059 -106896373 + Lx9 LINE L1 7494 7639 -5 4 1273 1467 267 62 25 chr1 90299228 90299677 -106895755 + RMER5 LTR ERV1 69 534 0 4 1273 244 299 89 55 chr1 90300889 90301091 -106894341 - HAL1 LINE L1 -130 2377 2169 4 1273 1483 153 23 15 chr1 90301210 90301469 -106893963 - ORR1C1 LTR MaLR 0 378 118 4 1273 299 164 0 16 chr1 90301909 90301971 -106893461 + GA-rich Low_complexity Low_complexity 5 65 0 4 1273 250 336 65 8 chr1 90301977 90302100 -106893332 - MER5A DNA MER1_type -38 151 22 4 1273 495 337 57 43 chr1 90305781 90306060 -106889372 + MLT-int LTR MaLR 415 697 -1038 4 1273 1047 324 56 34 chr1 90306719 90307186 -106888246 + MER82 DNA MER2_type 53 529 -124 4 1273 180 176 0 0 chr1 90307315 90307349 -106888083 + CT-rich Low_complexity Low_complexity 1 34 0 4 1273 503 193 46 0 chr1 90307355 90307464 -106887968 - PB1D7 SINE Alu -3 117 4 4 1273 462 79 0 0 chr1 90308436 90308499 -106886933 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1274 1039 283 94 37 chr1 90309147 90309602 -106885830 - RMER5 LTR ERV1 -5 529 49 4 1274 1196 148 98 10 chr1 90309637 90309842 -106885590 + URR1B DNA MER1_type 3 225 0 4 1274 317 104 0 29 chr1 90309943 90310012 -106885420 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 4 1274 276 282 0 125 chr1 90310018 90310164 -106885268 + MIRc SINE MIR 70 197 -65 4 1274 527 252 118 59 chr1 90310869 90311038 -106884394 - MTEa LTR MaLR 0 379 201 4 1274 266 209 57 50 chr1 90311018 90311159 -106884273 - RMER17A2 LTR ERVK -516 390 249 4 1274 463 273 141 42 chr1 90311134 90311325 -106884107 - MTEa LTR MaLR -169 210 1 4 1274 220 330 86 43 chr1 90311387 90311504 -106883928 + L2c LINE L2 3261 3382 -5 4 1274 484 267 17 7 chr1 90312247 90312363 -106883069 - ID_B1 SINE B4 -175 117 1 4 1274 277 240 84 96 chr1 90312544 90312627 -106882805 - ID4 SINE ID 0 83 2 4 1274 856 316 36 57 chr1 90312678 90313201 -106882231 - L1MB7 LINE L1 -27 6157 5646 4 1274 449 97 0 14 chr1 90313238 90313311 -106882121 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 4 1274 357 317 10 0 chr1 90313330 90313431 -106882001 - PB1D10 SINE Alu -12 105 4 4 1274 23 0 0 0 chr1 90313452 90313475 -106881957 + AT_rich Low_complexity Low_complexity 1 23 0 4 1274 947 172 124 10 chr1 90313475 90313669 -106881763 - B3 SINE B2 0 216 1 4 1274 1700 209 131 0 chr1 90314160 90314518 -106880914 - MTD LTR MaLR -2 417 13 4 1274 216 0 0 0 chr1 90315922 90315946 -106879486 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1274 621 338 98 17 chr1 90316178 90316524 -106878908 - MLT1F1 LTR MaLR -14 555 182 4 1274 190 67 41 82 chr1 90316533 90316582 -106878850 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 4 1274 363 261 181 29 chr1 90316582 90316720 -106878712 + HAL1-3A_ME LINE L1 1962 2120 -738 4 1274 206 290 82 41 chr1 90316865 90316962 -106878470 - L2c LINE L2 -1 3386 3286 4 1274 972 170 16 43 chr1 90318292 90318461 -106876971 + B3 SINE B2 1 165 -51 4 1274 468 0 0 0 chr1 90318461 90318513 -106876919 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1274 972 170 16 43 chr1 90318513 90318527 -106876905 + B3 SINE B2 166 179 -37 4 1274 22 0 0 0 chr1 90318550 90318572 -106876860 + AT_rich Low_complexity Low_complexity 1 22 0 4 1274 463 179 461 0 chr1 90318675 90318818 -106876614 - B3A SINE B2 -6 210 2 4 1274 783 236 19 6 chr1 90318954 90319112 -106876320 + B3 SINE B2 38 197 -19 4 1274 1002 148 3 8 chr1 90320765 90321125 -106874307 + (CATAT)n Simple_repeat Simple_repeat 1 357 0 4 1274 227 328 127 22 chr1 90323252 90323520 -106871912 + L1MC2 LINE L1 6024 6319 -25 4 1274 285 238 58 70 chr1 90323529 90323615 -106871817 + B4A SINE B4 2 86 -206 4 1274 253 329 12 12 chr1 90323661 90323747 -106871685 + B4A SINE B4 185 270 -22 4 1274 354 98 0 0 chr1 90323999 90324050 -106871382 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1274 274 328 66 37 chr1 90324095 90324231 -106871201 + B1F1 SINE Alu 7 146 -3 4 1274 186 133 0 0 chr1 90325977 90326007 -106869425 + (TCCCC)n Simple_repeat Simple_repeat 5 34 0 4 1274 698 254 232 10 chr1 90326284 90326590 -106868842 - MLT1A LTR MaLR 0 374 1 4 1274 1055 222 19 0 chr1 90326598 90326810 -106868622 + B3 SINE B2 1 216 0 4 1274 182 62 0 94 chr1 90326821 90326874 -106868558 + (CAA)n Simple_repeat Simple_repeat 2 49 0 4 1274 234 129 97 0 chr1 90327193 90327255 -106868177 + C-rich Low_complexity Low_complexity 2 69 0 4 1274 999 255 80 7 chr1 90327647 90327947 -106867485 + L1MCa LINE L1 10 331 -6177 4 1274 261 247 0 0 chr1 90328187 90328284 -106867148 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1274 817 87 40 6 chr1 90328305 90328478 -106866954 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1274 304 300 137 68 chr1 90328556 90328717 -106866715 - MLT1A1 LTR MaLR 0 408 237 4 1274 674 279 94 29 chr1 90328924 90329275 -106866157 + L1MCa LINE L1 919 1292 -5216 4 1274 810 249 78 69 chr1 90329288 90329607 -106865825 + RLTR12B LTR ERVK 11 332 -196 4 1274 539 281 66 108 chr1 90329665 90330042 -106865390 + RLTR12B LTR ERVK 176 528 0 4 1274 236 289 105 0 chr1 90330444 90330520 -106864912 + L1MCa LINE L1 1484 1567 -4941 4 1274 375 252 29 45 chr1 90330542 90330746 -106864686 + L1MCa LINE L1 1620 1867 -4641 4 1274 413 262 85 23 chr1 90330770 90330899 -106864533 - B3 SINE B2 -5 211 75 4 1274 373 263 53 0 chr1 90330894 90330989 -106864443 - RSINE1 SINE B4 -39 126 27 4 1274 34 24 0 0 chr1 90330989 90331030 -106864402 + AT_rich Low_complexity Low_complexity 1 41 0 4 1274 497 301 122 30 chr1 90331090 90331385 -106864047 - MLT1D LTR MaLR -3 502 181 4 1274 252 0 0 0 chr1 90331400 90331428 -106864004 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 1274 1233 35 0 0 chr1 90331430 90331572 -106863860 - B1_Mm SINE Alu -5 142 1 4 1274 871 308 70 25 chr1 90331612 90331953 -106863479 + MLT1B LTR MaLR 3 381 -9 4 1274 235 289 0 142 chr1 90331932 90332045 -106863387 - MLT1D LTR MaLR -408 97 1 4 1274 647 290 32 6 chr1 90332133 90332289 -106863143 - ID_B1 SINE B4 0 224 65 4 1274 245 125 0 0 chr1 90332302 90332342 -106863090 - ORR1D1 LTR MaLR 0 378 339 4 1274 1167 22 0 0 chr1 90332341 90332480 -106862952 + B1_Mm SINE Alu 9 147 0 4 1274 198 0 0 0 chr1 90332480 90332502 -106862930 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1274 1857 201 15 6 chr1 90332505 90332846 -106862586 - ORR1D1 LTR MaLR -30 344 1 4 1274 1182 56 0 14 chr1 90332985 90333131 -106862301 + B1_Mm SINE Alu 2 145 -2 4 1274 643 267 50 17 chr1 90333238 90333417 -106862015 + B3A SINE B2 13 197 -1 4 1274 21 0 0 0 chr1 90333425 90333446 -106861986 + AT_rich Low_complexity Low_complexity 1 21 0 4 1274 1130 126 136 0 chr1 90334936 90335134 -106860298 + URR1A DNA MER1_type 1 225 -1 4 1274 899 263 53 60 chr1 90335633 90335916 -106859516 + B4A SINE B4 2 282 -10 4 1274 516 32 0 0 chr1 90335919 90335981 -106859451 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1274 200 250 19 0 chr1 90336286 90336338 -106859094 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 4 1274 477 143 0 90 chr1 90336339 90336439 -106858993 + ORR1C1 LTR MaLR 198 288 -90 4 1274 574 266 41 52 chr1 90336441 90336635 -106858797 - B2_Mm2 SINE B2 -3 192 1 4 1274 290 159 169 31 chr1 90336635 90336687 -106858745 + ORR1C1 LTR MaLR 326 386 -8 4 1274 852 303 137 27 chr1 90337096 90337425 -106858007 - MTD LTR MaLR 0 419 55 4 1274 1409 109 22 26 chr1 90337441 90337667 -106857765 - URR1B DNA MER1_type 0 225 1 4 1274 668 241 86 35 chr1 90338412 90338610 -106856822 + B3A SINE B2 5 212 -4 4 1274 301 330 129 84 chr1 90338624 90339028 -106856404 + MLT1C LTR MaLR 1 422 -45 4 1274 519 198 172 0 chr1 90339361 90339477 -106855955 + ORR1E LTR MaLR 2 137 -222 4 1274 499 274 0 75 chr1 90339486 90339632 -106855800 - RSINE1 SINE B4 -29 136 2 4 1274 985 264 9 17 chr1 90339632 90339861 -106855571 - B4A SINE B4 -65 227 1 4 1274 234 0 0 0 chr1 90340393 90340419 -106855013 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1274 180 0 0 0 chr1 90340427 90340447 -106854985 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 4 1274 27 0 0 0 chr1 90340563 90340590 -106854842 + AT_rich Low_complexity Low_complexity 1 27 0 4 1274 959 296 15 0 chr1 90340896 90341170 -106854262 + B4 SINE B4 3 280 -12 4 1274 519 17 0 0 chr1 90341172 90341232 -106854200 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1274 23 0 0 0 chr1 90341475 90341498 -106853934 + AT_rich Low_complexity Low_complexity 1 23 0 4 1274 359 264 33 0 chr1 90341750 90341841 -106853591 - ID_B1 SINE B4 0 224 131 5 1274 458 330 40 27 chr1 90342001 90342225 -106853207 - Lx9 LINE L1 -287 7357 7131 5 1274 949 174 0 0 chr1 90342238 90342387 -106853045 + B1_Mur4 SINE Alu 2 150 0 5 1274 279 0 0 0 chr1 90342510 90342541 -106852891 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1274 444 37 0 0 chr1 90343648 90343702 -106851730 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 5 1274 1386 211 73 13 chr1 90344112 90344414 -106851018 + MTD LTR MaLR 13 332 -87 5 1274 1858 110 13 40 chr1 90344414 90344718 -106850714 - MMETn-int LTR ERVK -157 4687 4392 5 1274 312 196 84 47 chr1 90344718 90344825 -106850607 + MTD LTR MaLR 295 405 -14 5 1274 1329 67 34 0 chr1 90344884 90345062 -106850370 + B2_Mm1t SINE B2 2 185 -8 5 1274 641 275 16 29 chr1 90345218 90345425 -106850007 - L1MA4A LINE L1 -290 5888 5689 5 1274 706 213 36 94 chr1 90345685 90345877 -106849555 - B3A SINE B2 -16 182 2 5 1274 952 215 36 5 chr1 90345922 90346118 -106849314 - B3 SINE B2 -14 202 1 5 1274 350 108 0 15 chr1 90346135 90346201 -106849231 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 1274 477 171 0 0 chr1 90346200 90346288 -106849144 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 1274 302 271 88 53 chr1 90346367 90346480 -106848952 - L1MEc LINE L1 -5220 1180 1064 5 1274 461 32 16 0 chr1 90348322 90348385 -106847047 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1274 660 275 11 32 chr1 90348405 90348593 -106846839 - B4A SINE B4 -28 264 81 5 1274 529 159 15 116 chr1 90348593 90348769 -106846663 - RMER1B Other Other 0 1066 860 5 1274 654 104 0 0 chr1 90348771 90348867 -106846565 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 5 1274 1876 205 161 12 chr1 90348867 90349495 -106845937 - RMER1B Other Other -134 932 1 5 1274 182 264 94 0 chr1 90349931 90349984 -106845448 - L2b LINE L2 -43 3332 3275 5 1274 270 0 0 0 chr1 90350195 90350225 -106845207 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1274 217 312 0 35 chr1 90350824 90350937 -106844495 + GA-rich Low_complexity Low_complexity 1 109 0 5 1274 273 190 47 12 chr1 90351087 90351172 -106844260 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 5 1274 39 60 0 0 chr1 90351172 90351239 -106844193 + AT_rich Low_complexity Low_complexity 1 67 0 5 1274 308 24 24 0 chr1 90351239 90351280 -106844152 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 5 1274 342 132 0 38 chr1 90351844 90351923 -106843509 + G-rich Low_complexity Low_complexity 1 76 0 5 1274 289 254 0 45 chr1 90352093 90352107 -106843325 - ID SINE ID -139 85 74 5 1274 315 0 0 0 chr1 90352107 90352142 -106843290 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1274 289 254 0 45 chr1 90352142 90352193 -106843239 - ID SINE ID -151 73 23 5 1274 270 279 0 0 chr1 90352193 90352210 -106843222 - ID4_ SINE ID -11 72 5 5 1274 389 343 141 26 chr1 90352359 90352736 -106842696 + MER74B LTR ERVL 110 529 -93 5 1274 237 269 70 53 chr1 90353408 90353522 -106841910 - MLT1E1A LTR MaLR -231 449 334 5 1274 2921 98 40 98 chr1 90353538 90354070 -106841362 + Lx LINE L1 6151 6651 -3 5 1274 357 188 0 0 chr1 90354077 90354157 -106841275 + GA-rich Low_complexity Low_complexity 3 82 0 5 1274 801 228 100 5 chr1 90354424 90354614 -106840818 - B3 SINE B2 -6 210 3 5 1274 205 320 79 26 chr1 90354660 90354814 -106840618 + MIRc SINE MIR 33 193 -83 5 1274 437 353 95 12 chr1 90355321 90355562 -106839870 - L2 LINE L2 -501 2918 2658 5 1274 843 283 54 86 chr1 90355567 90355743 -106839689 - ORR1E LTR MaLR 0 359 194 5 1274 1972 146 70 158 chr1 90355743 90356231 -106839201 - RLTR41 LTR ERV1 0 446 2 5 1274 843 283 54 86 chr1 90356231 90356425 -106839007 - ORR1E LTR MaLR -166 193 1 5 1274 582 126 0 0 chr1 90356673 90356776 -106838656 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1274 192 77 0 0 chr1 90356933 90356959 -106838473 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1274 1264 34 0 7 chr1 90357446 90357595 -106837837 + B1_Mus1 SINE Alu 1 148 0 5 1274 607 214 87 57 chr1 90357844 90357948 -106837484 + RMER17C LTR ERVK 1 176 -234 5 1274 360 0 0 0 chr1 90357948 90357988 -106837444 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1274 243 0 0 0 chr1 90357988 90358014 -106837418 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1274 607 196 137 33 chr1 90358014 90358197 -106837235 + RMER17C LTR ERVK 177 378 -32 5 1274 418 273 18 0 chr1 90358667 90358777 -106836655 - Lx8 LINE L1 -245 7228 7117 5 1274 813 302 101 30 chr1 90359212 90359639 -106835793 - MER31A LTR ERV1 -12 473 17 5 1274 943 315 92 21 chr1 90359964 90360398 -106835034 - RMER5 LTR ERV1 0 534 70 5 1274 261 299 30 30 chr1 90360859 90360959 -106834473 - MER5A DNA MER1_type -67 122 23 5 1274 324 220 13 175 chr1 90361450 90361523 -106833909 + Charlie12 DNA MER1_type 20 89 -2784 5 1274 1438 142 9 0 chr1 90361523 90361742 -106833690 + URR1B DNA MER1_type 1 221 -4 5 1274 324 220 13 175 chr1 90361742 90361822 -106833610 + Charlie12 DNA MER1_type 90 148 -2725 5 1274 223 364 0 68 chr1 90362799 90362917 -106832515 - ID_B1 SINE B4 -99 125 16 5 1274 261 175 208 40 chr1 90362929 90363030 -106832402 - MIR SINE MIR -103 159 42 5 1274 180 176 0 0 chr1 90364038 90364072 -106831360 + CT-rich Low_complexity Low_complexity 1 34 0 5 1274 318 243 158 22 chr1 90364072 90364211 -106831221 - HAL1-3A_ME LINE L1 -731 2127 1970 5 1274 849 236 114 31 chr1 90364246 90364500 -106830932 - B4A SINE B4 -17 275 1 5 1274 758 152 9 24 chr1 90364596 90364743 -106830689 + ORR1D1 LTR MaLR 1 135 -232 5 1274 937 268 17 75 chr1 90365627 90365966 -106829466 + ORR1E LTR MaLR 1 322 -48 5 1274 418 239 91 0 chr1 90365927 90366015 -106829417 - RSINE1 SINE B4 -48 117 22 5 1274 366 23 0 0 chr1 90366297 90366340 -106829092 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1274 871 252 59 17 chr1 90366455 90366693 -106828739 + B4A SINE B4 45 292 0 5 1274 354 146 0 0 chr1 90366744 90366826 -106828606 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 1274 529 279 273 57 chr1 90367653 90368042 -106827390 - MLT1D LTR MaLR -11 494 22 5 1274 1377 87 22 0 chr1 90368559 90368744 -106826688 + B2_Mm2 SINE B2 1 189 -6 5 1274 227 309 14 14 chr1 90368757 90368826 -106826606 - Charlie12 DNA MER1_type -2774 99 31 5 1274 276 284 0 0 chr1 90369294 90369529 -106825903 + (TATG)n Simple_repeat Simple_repeat 1 235 0 5 1274 276 130 0 0 chr1 90369543 90369589 -106825843 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 5 1274 920 262 69 18 chr1 90369607 90369883 -106825549 - B4 SINE B4 -2 290 1 5 1274 195 42 0 0 chr1 90373916 90373940 -106821492 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1274 1007 279 98 11 chr1 90373948 90374213 -106821219 - B4 SINE B4 -4 288 1 5 1274 495 322 100 61 chr1 90374479 90374919 -106820513 - Lx8 LINE L1 -2 7471 7015 5 1274 270 279 125 23 chr1 90375163 90375251 -106820181 + L2b LINE L2 3265 3361 -14 5 1274 949 237 24 0 chr1 90375274 90375485 -106819947 + B3 SINE B2 1 216 0 5 1274 414 325 119 95 chr1 90375694 90375979 -106819453 + B4 SINE B4 1 292 0 5 1274 240 241 0 0 chr1 90375986 90376065 -106819367 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1274 456 219 0 47 chr1 90376084 90376170 -106819262 + PB1D10 SINE Alu 13 94 -23 5 1274 246 300 65 65 chr1 90376086 90376193 -106819239 + B4A SINE B4 100 206 -86 5 1274 886 163 0 0 chr1 90376729 90376870 -106818562 + B1_Mus1 SINE Alu 1 141 -7 5 1274 204 200 0 0 chr1 90376984 90377029 -106818403 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1274 183 80 0 0 chr1 90377038 90377063 -106818369 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1274 204 40 0 0 chr1 90377928 90377953 -106817479 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1274 242 218 63 24 chr1 90378681 90378808 -106816624 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 1274 333 221 6 24 chr1 90379833 90380000 -106815432 + (TCTCTG)n Simple_repeat Simple_repeat 4 167 0 5 1274 22 35 0 0 chr1 90381546 90381575 -106813857 + AT_rich Low_complexity Low_complexity 1 29 0 5 1274 504 219 48 0 chr1 90381624 90381729 -106813703 - PB1D10 SINE Alu -7 110 1 5 1274 370 245 67 104 chr1 90381759 90381923 -106813509 - MLT1F LTR MaLR -180 368 211 5 1274 277 196 0 0 chr1 90381996 90382047 -106813385 + URR1B DNA MER1_type 68 118 -107 5 1274 1293 102 11 0 chr1 90382047 90382224 -106813208 + B2_Mm1t SINE B2 1 179 -14 5 1274 362 105 353 69 chr1 90382281 90382383 -106813049 + B2_Mm2 SINE B2 47 177 -18 5 1274 198 0 0 0 chr1 90382385 90382407 -106813025 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 5 1274 392 250 39 106 chr1 90382407 90382422 -106813010 - CYRA11_Mm Unknown Y-chromosome -308 309 234 5 1274 700 127 0 78 chr1 90382422 90382486 -106812946 + URR1B DNA MER1_type 106 166 -59 5 1274 3169 60 9 19 chr1 90382486 90382911 -106812521 - BGLII LTR ERVK 0 421 1 5 1274 700 127 0 78 chr1 90382911 90382974 -106812458 + URR1B DNA MER1_type 167 223 -2 5 1274 392 250 39 106 chr1 90382974 90383010 -106812422 - CYRA11_Mm Unknown Y-chromosome -384 233 143 5 1274 307 237 90 90 chr1 90383682 90383826 -106811606 + L1MCa LINE L1 1828 1971 -4537 5 1274 195 146 0 0 chr1 90383830 90383871 -106811561 + (CATA)n Simple_repeat Simple_repeat 2 42 0 5 1274 474 328 55 29 chr1 90384177 90384450 -106810982 - B4A SINE B4 -12 280 1 5 1274 22 0 0 0 chr1 90384450 90384472 -106810960 + AT_rich Low_complexity Low_complexity 1 22 0 5 1274 181 83 0 0 chr1 90384560 90384584 -106810848 - MIRb SINE MIR -31 237 214 5 1274 242 303 68 43 chr1 90384621 90384783 -106810649 - MLT1F LTR MaLR -231 236 71 5 1274 502 200 0 110 chr1 90384942 90385060 -106810372 - PB1D9 SINE Alu -8 112 8 5 1274 247 267 103 91 chr1 90384978 90385143 -106810289 - MT2B LTR ERVL -361 240 74 5 1274 254 268 35 35 chr1 90386694 90386779 -106808653 - RMER21B LTR ERV1 -112 835 751 5 1274 570 225 209 13 chr1 90386825 90387050 -106808382 - RMER21B LTR ERV1 -275 567 299 5 1274 1170 256 179 12 chr1 90387339 90387769 -106807663 + RMER5 LTR ERV1 33 534 0 5 1274 510 224 94 56 chr1 90387863 90388010 -106807422 + B3A SINE B2 2 160 -35 6 1274 450 0 0 0 chr1 90388010 90388060 -106807372 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1274 483 224 94 56 chr1 90388060 90388092 -106807340 + B2_Mm2 SINE B2 161 188 -7 6 1274 209 302 49 45 chr1 90388355 90388522 -106806910 - MIRb SINE MIR -92 176 1 6 1274 718 317 12 4 chr1 90388717 90388958 -106806474 - Lx8 LINE L1 -236 7237 6995 6 1274 426 270 197 0 chr1 90388977 90389129 -106806303 - Lx8 LINE L1 -911 6562 6381 6 1274 477 110 0 0 chr1 90390572 90390645 -106804787 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 6 1274 281 355 172 40 chr1 90390783 90391056 -106804376 + LTR33 LTR ERVL 151 459 -56 6 1274 600 305 86 22 chr1 90391134 90391402 -106804030 - B4A SINE B4 -4 288 4 6 1274 191 88 0 29 chr1 90391439 90391474 -106803958 + (TCC)n Simple_repeat Simple_repeat 3 36 0 6 1274 252 319 102 75 chr1 90391539 90391793 -106803639 - MLT1D LTR MaLR -194 311 51 6 1274 1463 254 8 88 chr1 90391988 90392376 -106803056 - ORR1E LTR MaLR -2 357 1 6 1274 441 290 109 29 chr1 90392530 90392693 -106802739 + MLT1C LTR MaLR 6 182 -285 6 1274 507 206 78 0 chr1 90392693 90392795 -106802637 + PB1D9 SINE Alu 2 111 -9 6 1274 26 30 0 0 chr1 90392797 90392830 -106802602 + AT_rich Low_complexity Low_complexity 1 33 0 6 1274 252 143 0 0 chr1 90393667 90393709 -106801723 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1274 330 26 0 0 chr1 90394221 90394260 -106801172 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1274 216 0 0 0 chr1 90394260 90394283 -106801149 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1274 259 156 31 15 chr1 90394299 90394364 -106801068 + GA-rich Low_complexity Low_complexity 3 68 0 6 1274 1405 230 35 37 chr1 90394379 90394754 -106800678 - MTE2b LTR MaLR -4 375 2 6 1274 186 279 0 0 chr1 90395427 90395470 -106799962 + MIRm SINE MIR 232 274 -2 6 1274 261 0 0 0 chr1 90396275 90396304 -106799128 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1274 257 346 103 36 chr1 90396793 90396988 -106798444 - MER63A DNA AcHobo -2 208 1 6 1274 1014 73 0 0 chr1 90399082 90399218 -106796214 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 1274 830 305 37 80 chr1 90399552 90399769 -106795663 - B4 SINE B4 0 292 81 6 1274 1062 104 0 0 chr1 90399769 90400128 -106795304 + (CTG)n Simple_repeat Simple_repeat 1 359 0 6 1274 830 305 37 80 chr1 90400128 90400203 -106795229 - B4 SINE B4 -212 80 7 6 1274 594 346 32 55 chr1 90400881 90401227 -106794205 - LTR31 LTR ERV1 -138 481 144 6 1274 234 0 0 0 chr1 90401775 90401801 -106793631 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1274 181 374 63 24 chr1 90401946 90402072 -106793360 + MIR3 SINE MIR 77 207 -1 6 1274 219 344 48 8 chr1 90403191 90403317 -106792115 - MIRb SINE MIR -80 188 58 6 1274 584 321 98 55 chr1 90403437 90403783 -106791649 - MLT1A0 LTR MaLR -2 363 3 6 1274 266 0 0 29 chr1 90404090 90404125 -106791307 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1274 197 0 0 67 chr1 90404346 90404376 -106791056 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1274 608 267 7 7 chr1 90404853 90405000 -106790432 - RSINE1 SINE B4 -17 148 2 6 1274 249 310 0 0 chr1 90405026 90405084 -106790348 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1274 383 261 378 46 chr1 90405087 90405304 -106790128 - B4 SINE B4 0 292 4 6 1274 213 333 49 73 chr1 90405600 90405723 -106789709 - PB1D9 SINE Alu 0 120 1 6 1274 31 26 0 0 chr1 90405894 90405932 -106789500 + AT_rich Low_complexity Low_complexity 1 38 0 6 1274 23 0 0 0 chr1 90406188 90406211 -106789221 + AT_rich Low_complexity Low_complexity 1 23 0 6 1274 492 294 88 88 chr1 90406508 90406851 -106788581 - MLT1A0 LTR MaLR -4 361 19 6 1274 439 252 185 0 chr1 90407167 90407302 -106788130 - ID_B1 SINE B4 -8 216 57 6 1274 553 197 36 43 chr1 90407585 90407723 -106787709 - B3 SINE B2 0 216 80 6 1274 354 165 127 0 chr1 90407787 90407866 -106787566 - B3A SINE B2 -109 89 1 6 1274 231 365 21 0 chr1 90408541 90408637 -106786795 - MLT1C LTR MaLR -53 355 258 6 1274 414 0 0 0 chr1 90409196 90409242 -106786190 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1274 189 0 0 0 chr1 90409242 90409262 -106786170 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1274 216 203 40 13 chr1 90409265 90409340 -106786092 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 1274 580 169 11 0 chr1 90409344 90409522 -106785910 + CT-rich Low_complexity Low_complexity 1 180 0 6 1274 441 0 0 0 chr1 90409522 90409571 -106785861 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1274 181 312 0 15 chr1 90409818 90409883 -106785549 + L3 LINE CR1 4349 4412 -77 6 1274 207 0 0 0 chr1 90411188 90411211 -106784221 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1274 245 293 85 0 chr1 90411262 90411344 -106784088 - MLT1C LTR MaLR -255 212 124 6 1274 620 170 0 0 chr1 90412117 90412223 -106783209 - Lx9 LINE L1 -232 7412 7307 6 1274 329 359 74 5 chr1 90412246 90412488 -106782944 - L1M5 LINE L1 -597 5576 5316 6 1274 225 0 0 0 chr1 90412497 90412522 -106782910 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 1274 215 253 157 28 chr1 90412797 90412903 -106782529 - L2c LINE L2 -31 3395 3253 6 1274 202 333 200 24 chr1 90413003 90413338 -106782094 - L2c LINE L2 -357 3062 2669 6 1274 219 36 0 0 chr1 90414290 90414318 -106781114 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 6 1274 586 256 218 17 chr1 90414399 90414752 -106780680 + L1MC3 LINE L1 7355 7778 -7 6 1274 200 35 35 0 chr1 90414787 90414816 -106780616 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 6 1274 314 275 0 0 chr1 90414825 90414894 -106780538 - ID4_ SINE ID -13 70 2 6 1274 926 252 92 11 chr1 90414927 90415188 -106780244 + B4A SINE B4 3 284 -8 6 1274 258 247 0 0 chr1 90415195 90415272 -106780160 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1274 865 229 69 5 chr1 90416484 90416686 -106778746 + ID_B1 SINE B4 8 222 -2 6 1274 462 312 80 58 chr1 90417273 90417549 -106777883 - MLT1J1 LTR MaLR -146 298 17 6 1274 3096 60 29 5 chr1 90418553 90418939 -106776493 - MTA_Mm LTR MaLR -1 395 1 6 1274 7725 67 12 77 chr1 90418939 90420113 -106775319 - MTA_Mm-int LTR MaLR 0 1098 1 6 1274 3358 36 5 8 chr1 90420113 90420510 -106774922 - MTA_Mm LTR MaLR 0 396 1 6 1274 542 315 79 42 chr1 90420543 90420808 -106774624 + B4 SINE B4 1 275 -17 6 1274 222 37 0 0 chr1 90420877 90420904 -106774528 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1274 576 77 0 0 chr1 90420914 90420992 -106774440 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1274 524 311 67 98 chr1 90421149 90421506 -106773926 - ORR1E LTR MaLR -11 348 3 6 1274 259 243 62 164 chr1 90422083 90422211 -106773221 - MTE2b LTR MaLR -10 369 255 6 1274 441 0 0 0 chr1 90422455 90422504 -106772928 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1274 394 157 16 55 chr1 90422508 90422636 -106772796 + GA-rich Low_complexity Low_complexity 1 123 0 6 1274 560 329 45 13 chr1 90423256 90423410 -106772022 + RSINE1 SINE B4 2 160 -5 6 1274 1221 260 148 35 chr1 90423980 90424125 -106771307 + L1ME2 LINE L1 5314 5476 -688 6 1274 594 28 0 0 chr1 90424125 90424197 -106771235 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 6 1274 1221 260 148 35 chr1 90424197 90424680 -106770752 + L1ME2 LINE L1 5477 6012 -152 6 1274 1682 228 91 5 chr1 90424691 90425075 -106770357 + MTD LTR MaLR 3 419 0 6 1274 733 315 121 12 chr1 90425332 90425663 -106769769 + MER54A LTR ERVL 61 427 -474 6 1274 1251 157 237 54 chr1 90425761 90426077 -106769355 - ORR1D1 LTR MaLR 0 374 1 6 1274 817 146 7 7 chr1 90426136 90426194 -106769238 + polypyrimidine Low_complexity Low_complexity 97 154 0 6 1274 1578 11 0 0 chr1 90426194 90426374 -106769058 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1274 817 146 7 7 chr1 90426374 90426467 -106768965 + polypyrimidine Low_complexity Low_complexity 3 96 0 6 1274 273 354 63 42 chr1 90426703 90426942 -106768490 + MIR SINE MIR 12 255 -7 6 1274 279 0 0 0 chr1 90427326 90427357 -106768075 + (TATG)n Simple_repeat Simple_repeat 4 34 0 6 1274 881 267 68 47 chr1 90427392 90427671 -106767761 - B4 SINE B4 -6 286 2 6 1274 25 31 0 0 chr1 90427673 90427705 -106767727 + AT_rich Low_complexity Low_complexity 1 32 0 6 1274 289 188 115 115 chr1 90427897 90428053 -106767379 - Lx8 LINE L1 0 7473 7318 6 1274 195 42 0 0 chr1 90429744 90429768 -106765664 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 1274 1208 83 0 0 chr1 90429769 90429925 -106765507 - B2_Mm2 SINE B2 -37 158 3 6 1274 977 85 7 0 chr1 90429969 90430110 -106765322 + (TTC)n Simple_repeat Simple_repeat 2 143 0 6 1274 3738 77 6 2 chr1 90431200 90431685 -106763747 - Lx3_Mus LINE L1 -5 7004 6518 6 1274 846 249 26 11 chr1 90431737 90431928 -106763504 - B4 SINE B4 -14 278 85 6 1274 1463 43 21 16 chr1 90432205 90432392 -106763040 - B2_Mm2 SINE B2 -7 188 1 6 1274 704 111 0 8 chr1 90432626 90432744 -106762688 + (TG)n Simple_repeat Simple_repeat 1 117 0 6 1274 1090 102 90 0 chr1 90432784 90432950 -106762482 - B2_Mm2 SINE B2 -14 181 1 6 1274 323 337 20 10 chr1 90432950 90433052 -106762380 - RSINE1 SINE B4 -46 119 17 6 1274 397 296 21 36 chr1 90433385 90433525 -106761907 + B1F2 SINE Alu 11 148 -1 6 1274 1521 214 98 9 chr1 90434414 90434749 -106760683 - ORR1D2 LTR MaLR 0 370 6 6 1274 214 204 22 22 chr1 90434874 90434919 -106760513 + PB1D10 SINE Alu 41 85 -32 6 1274 369 109 0 0 chr1 90435741 90435796 -106759636 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1274 1029 259 52 19 chr1 90435796 90436055 -106759377 - B4 SINE B4 -22 270 1 6 1274 441 0 0 0 chr1 90436249 90436298 -106759134 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1274 346 258 98 68 chr1 90437038 90437171 -106758261 + MLT1A LTR MaLR 2 138 -236 6 1274 287 380 21 0 chr1 90437329 90437471 -106757961 - MIR SINE MIR -116 146 2 6 1274 559 298 50 55 chr1 90437543 90437742 -106757690 + B3A SINE B2 1 198 0 6 1274 33 0 0 0 chr1 90437830 90437863 -106757569 + AT_rich Low_complexity Low_complexity 1 33 0 7 1274 505 319 37 25 chr1 90437889 90438050 -106757382 - RSINE1 SINE B4 0 165 3 7 1274 670 291 117 5 chr1 90438063 90438260 -106757172 - ID_B1 SINE B4 0 224 6 7 1274 298 172 103 0 chr1 90438259 90438317 -106757115 + MER53 DNA hAT 127 190 -3 7 1274 187 222 222 0 chr1 90438817 90438898 -106756534 - L2 LINE L2 -3127 292 194 7 1274 22 0 0 0 chr1 90439108 90439130 -106756302 + AT_rich Low_complexity Low_complexity 1 22 0 7 1274 318 226 53 94 chr1 90439157 90439240 -106756192 - RMER17D LTR ERVK -344 545 474 7 1274 779 211 176 16 chr1 90439240 90439490 -106755942 - B4A SINE B4 0 292 3 7 1274 318 226 53 94 chr1 90439490 90439577 -106755855 - RMER17D LTR ERVK -416 473 382 7 1275 269 135 0 19 chr1 90440649 90440702 -106754730 + CT-rich Low_complexity Low_complexity 3 54 0 7 1275 493 212 81 0 chr1 90440730 90440829 -106754603 - RSINE1 SINE B4 -57 108 2 7 1275 674 300 6 0 chr1 90441083 90441253 -106754179 + Lx8 LINE L1 7169 7339 -134 7 1275 5016 91 51 4 chr1 90441530 90442234 -106753198 + RMER19A LTR ERVK 1 737 0 7 1275 609 292 161 43 chr1 90442286 90442590 -106752842 - MER21B LTR ERV1 -107 756 417 7 1275 234 0 0 0 chr1 90443250 90443276 -106752156 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1275 289 284 11 22 chr1 90443649 90443739 -106751693 + CT-rich Low_complexity Low_complexity 4 92 0 7 1275 361 127 0 16 chr1 90443987 90444051 -106751381 + L1MD2 LINE L1 6296 6358 -1 7 1275 878 163 0 26 chr1 90444332 90444483 -106750949 + B1_Mus2 SINE Alu 1 147 0 7 1275 210 154 0 0 chr1 90444494 90444533 -106750899 + A-rich Low_complexity Low_complexity 4 42 0 7 1275 375 23 0 0 chr1 90444583 90444627 -106750805 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1275 465 19 0 0 chr1 90444628 90444682 -106750750 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1275 367 200 57 16 chr1 90445468 90445590 -106749842 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 7 1275 189 74 0 0 chr1 90445687 90445714 -106749718 + (CTG)n Simple_repeat Simple_repeat 2 28 0 7 1275 666 95 0 0 chr1 90445712 90445807 -106749625 + (TCC)n Simple_repeat Simple_repeat 3 97 0 7 1275 207 171 0 0 chr1 90445920 90445955 -106749477 + (CAGA)n Simple_repeat Simple_repeat 1 35 0 7 1275 188 67 33 0 chr1 90446481 90446511 -106748921 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 7 1275 939 126 0 0 chr1 90446936 90447071 -106748361 + B1_Mur4 SINE Alu 5 139 -11 7 1275 258 195 37 0 chr1 90447072 90447154 -106748278 + GA-rich Low_complexity Low_complexity 1 85 0 7 1275 2752 44 3 20 chr1 90447603 90447791 -106747641 + MTA_Mm LTR MaLR 1 188 -208 7 1275 2287 20 0 151 chr1 90447791 90448135 -106747297 - RLTR10B LTR ERVK 0 292 1 7 1275 2752 44 3 20 chr1 90448135 90448293 -106747139 + MTA_Mm LTR MaLR 189 341 -55 7 1275 2512 101 93 3 chr1 90448293 90448671 -106746761 - RLTR44B LTR ERVK 0 449 38 7 1275 522 33 0 0 chr1 90448679 90448740 -106746692 + MTA_Mm LTR MaLR 340 400 0 7 1275 632 269 99 43 chr1 90448953 90449300 -106746132 + RLTR11B LTR ERVK 54 424 -17 7 1275 309 287 57 11 chr1 90449381 90449469 -106745963 - L1MEg LINE L1 -4139 1945 1854 7 1275 491 292 13 45 chr1 90449776 90449906 -106745526 - RSINE1 SINE B4 -16 149 23 7 1275 252 0 0 0 chr1 90449906 90449934 -106745498 + (CCA)n Simple_repeat Simple_repeat 2 29 0 7 1275 491 292 13 45 chr1 90449934 90449957 -106745475 - RSINE1 SINE B4 -143 22 1 7 1275 262 292 28 0 chr1 90450105 90450177 -106745255 - ID4_ SINE ID -6 77 4 7 1275 704 188 54 53 chr1 90450883 90451145 -106744287 - RMER17C LTR ERVK -47 363 96 7 1275 1098 135 0 0 chr1 90451145 90451323 -106744109 + (GA)n Simple_repeat Simple_repeat 1 178 0 7 1275 704 160 31 85 chr1 90451323 90451519 -106743913 - RMER17C LTR ERVK -226 184 1 7 1275 1695 335 123 21 chr1 90451530 90452231 -106743201 - MTE-int LTR MaLR -59 1521 750 7 1275 682 251 4 56 chr1 90452243 90452427 -106743005 - MTD LTR MaLR -243 176 1 7 1275 1034 87 199 0 chr1 90452647 90452808 -106742624 - B2_Mm2 SINE B2 -1 194 2 7 1275 216 365 68 31 chr1 90453244 90453440 -106741992 + MIRb SINE MIR 35 231 -31 7 1275 1137 240 91 50 chr1 90454977 90455341 -106740091 + MTE2a LTR MaLR 1 379 0 7 1275 229 370 64 19 chr1 90456172 90456329 -106739103 + MIR SINE MIR 21 184 -78 7 1275 389 272 42 79 chr1 90456412 90456547 -106738885 - PB1D10 SINE Alu -22 127 2 7 1275 484 222 8 0 chr1 90456678 90456946 -106738486 + (TG)n Simple_repeat Simple_repeat 1 270 0 7 1275 635 245 20 20 chr1 90456961 90457107 -106738325 - RSINE1 SINE B4 -3 162 17 7 1275 473 0 18 0 chr1 90459495 90459552 -106735880 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 7 1275 386 294 29 0 chr1 90461876 90462012 -106733420 - L1MD1 LINE L1 -24 6218 6079 7 1275 2304 102 19 0 chr1 90462658 90462971 -106732461 + ORR1A2 LTR MaLR 1 319 -8 7 1275 393 269 35 78 chr1 90463053 90463131 -106732301 + ID_B1 SINE B4 90 168 -56 7 1275 3375 140 40 52 chr1 90463131 90463710 -106731722 - RMER15 LTR ERVL 0 575 4 7 1275 393 269 35 78 chr1 90463710 90463772 -106731660 + ID_B1 SINE B4 169 224 0 7 1275 246 173 19 0 chr1 90463772 90463824 -106731608 + A-rich Low_complexity Low_complexity 5 57 0 7 1275 3302 172 15 78 chr1 90463831 90464066 -106731366 + RMER20B LTR ERVK 1 216 -411 7 1275 1281 115 11 0 chr1 90464066 90464257 -106731175 + B2_Mm1t SINE B2 1 193 0 7 1275 3302 172 15 78 chr1 90464257 90464690 -106730742 + RMER20B LTR ERVK 217 627 0 7 1275 635 208 9 46 chr1 90464690 90464825 -106730607 - ORR1D1 LTR MaLR -277 117 1 7 1275 459 35 0 0 chr1 90464835 90464892 -106730540 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1275 370 282 77 80 chr1 90464943 90465217 -106730215 - B4 SINE B4 -18 274 2 7 1275 203 253 156 33 chr1 90465318 90465408 -106730024 - L2a LINE L2 0 3426 3326 7 1275 396 0 0 0 chr1 90466127 90466171 -106729261 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1275 1141 104 52 57 chr1 90466753 90466918 -106728514 + B2_Mm2 SINE B2 1 170 -25 7 1275 3012 109 29 2 chr1 90466918 90467368 -106728064 + Lx4A LINE L1 6596 7057 -1 7 1275 1141 104 52 57 chr1 90467368 90467396 -106728036 + B2_Mm2 SINE B2 171 193 -2 7 1275 1119 82 0 13 chr1 90467592 90467741 -106727691 - B1_Mus1 SINE Alu -1 147 1 7 1275 303 308 92 0 chr1 90467760 90467880 -106727552 - RSINE1 SINE B4 -22 143 13 7 1275 2058 53 0 33 chr1 90468197 90468468 -106726964 - L1Md_F2 LINE L1 0 6582 6321 7 1275 883 174 0 76 chr1 90468468 90468704 -106726728 + RMER10B LTR ERVL 48 265 -133 7 1275 203 196 0 42 chr1 90468704 90468752 -106726680 + CT-rich Low_complexity Low_complexity 6 51 0 7 1275 1283 171 39 78 chr1 90468756 90469091 -106726341 + RLTRETN_Mm LTR ERVK 1 322 0 7 1275 3699 90 38 59 chr1 90469120 90469731 -106725701 + MMETn-int LTR ERVK 4247 4844 0 7 1275 606 71 0 0 chr1 90469731 90469816 -106725616 + RLTRETN_Mm LTR ERVK 1 85 -237 7 1275 335 180 63 0 chr1 90469817 90469928 -106725504 + (TA)n Simple_repeat Simple_repeat 2 119 0 7 1275 380 172 11 0 chr1 90469982 90470069 -106725363 + (TA)n Simple_repeat Simple_repeat 1 88 0 7 1275 777 188 26 58 chr1 90470077 90470308 -106725124 + RLTRETN_Mm LTR ERVK 88 409 0 7 1275 842 218 41 6 chr1 90470313 90470484 -106724948 + RMER10B LTR ERVL 220 396 -2 7 1275 270 0 0 0 chr1 90470603 90470633 -106724799 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1275 218 173 67 8 chr1 90470679 90470813 -106724619 + (TA)n Simple_repeat Simple_repeat 2 143 0 7 1275 434 180 10 0 chr1 90470867 90470967 -106724465 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 1275 1570 60 0 29 chr1 90470978 90471184 -106724248 - MTB_Mm LTR MaLR -207 200 1 7 1275 477 0 0 0 chr1 90471184 90471237 -106724195 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1275 378 0 0 0 chr1 90473442 90473484 -106721948 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1275 1084 305 78 36 chr1 90473514 90474014 -106721418 - MT2A LTR ERVL 0 533 13 7 1275 247 300 0 14 chr1 90474547 90474618 -106720814 + ID4 SINE ID 2 71 -12 7 1275 808 221 24 7 chr1 90475012 90475167 -106720265 + B3A SINE B2 1 167 -49 7 1275 333 68 0 0 chr1 90475167 90475211 -106720221 + (CATA)n Simple_repeat Simple_repeat 1 44 0 7 1275 800 263 82 5 chr1 90475211 90475250 -106720182 + B3 SINE B2 168 209 -7 7 1275 356 309 49 62 chr1 90475368 90475530 -106719902 - B4A SINE B4 -23 269 110 7 1275 1964 188 87 30 chr1 90475567 90475994 -106719438 - RLTR11A LTR ERVK 0 528 78 7 1275 240 276 89 77 chr1 90476698 90476945 -106718487 + RMER12 LTR ERVK 736 985 -337 7 1275 371 236 312 89 chr1 90476945 90477182 -106718250 - B4 SINE B4 0 292 3 7 1275 360 257 165 29 chr1 90477276 90477436 -106717996 - MLT1E3 LTR MaLR -9 671 430 7 1275 236 285 58 135 chr1 90477452 90477517 -106717915 - B2_Mm2 SINE B2 -3 192 2 7 1275 631 276 7 7 chr1 90477517 90477659 -106717773 - RSINE1 SINE B4 -21 144 3 7 1275 389 246 45 1 chr1 90477663 90477784 -106717648 - MLT1E3 LTR MaLR -208 472 312 7 1275 360 125 0 0 chr1 90478849 90478913 -106716519 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1275 368 244 13 0 chr1 90478921 90478999 -106716433 - B1F1 SINE Alu -27 122 44 7 1275 440 189 133 0 chr1 90479999 90480089 -106715343 - PB1D9 SINE Alu -16 104 3 7 1275 2908 157 46 8 chr1 90480273 90480769 -106714663 + RMER20A LTR ERVK 1 515 -1 7 1275 298 295 51 0 chr1 90481568 90481646 -106713786 - B1F SINE Alu -9 140 59 7 1275 768 192 7 33 chr1 90481808 90481959 -106713473 - B1_Mus1 SINE Alu 0 148 2 7 1275 238 320 67 10 chr1 90482110 90482214 -106713218 - MER5A DNA MER1_type 0 189 80 7 1275 3290 36 18 2 chr1 90482282 90482676 -106712756 - MTB LTR MaLR 0 400 1 7 1275 181 294 32 105 chr1 90482846 90482941 -106712491 + MIRc SINE MIR 41 128 -140 7 1275 1098 55 7 14 chr1 90483157 90483305 -106712127 - L1_Mus1 LINE L1 0 6567 6421 7 1275 906 245 31 36 chr1 90484530 90484602 -106710830 + ID SINE ID 1 72 -152 7 1275 2629 49 143 3 chr1 90484602 90484951 -106710481 - MTB LTR MaLR 0 400 3 7 1275 906 245 31 36 chr1 90484951 90485102 -106710330 + ID_B1 SINE B4 73 223 -1 7 1275 329 102 17 0 chr1 90485519 90485578 -106709854 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1275 222 62 0 0 chr1 90485791 90485823 -106709609 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1275 392 80 0 0 chr1 90485975 90486025 -106709407 + (TTCTC)n Simple_repeat Simple_repeat 2 51 0 7 1275 713 93 9 0 chr1 90486025 90486132 -106709300 + (TCC)n Simple_repeat Simple_repeat 2 109 0 8 1275 899 261 206 43 chr1 90486316 90486649 -106708783 - MTE2a LTR MaLR 0 419 32 8 1275 310 239 0 25 chr1 90487199 90487319 -106708113 + CT-rich Low_complexity Low_complexity 1 117 0 8 1275 207 69 0 0 chr1 90488075 90488104 -106707328 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1275 314 262 163 8 chr1 90488207 90488330 -106707102 - B1F SINE Alu -6 143 2 8 1275 849 215 15 20 chr1 90489167 90489362 -106706070 + B3A SINE B2 1 194 -4 8 1275 1387 277 56 5 chr1 90489443 90489817 -106705615 - RLTR18B LTR ERVK 0 512 120 8 1275 25 31 0 0 chr1 90491853 90491885 -106703547 + AT_rich Low_complexity Low_complexity 1 32 0 8 1275 446 279 0 11 chr1 90492145 90492374 -106703058 + (GTCTG)n Simple_repeat Simple_repeat 1 226 0 8 1275 457 286 0 0 chr1 90492424 90492599 -106702833 + (GTCTG)n Simple_repeat Simple_repeat 3 177 0 8 1275 474 274 0 0 chr1 90492559 90492734 -106702698 + (CTCTG)n Simple_repeat Simple_repeat 3 177 0 8 1275 491 279 0 0 chr1 90492657 90492836 -106702596 + (GTCTG)n Simple_repeat Simple_repeat 1 179 0 8 1275 214 308 27 7 chr1 90492852 90492999 -106702433 + (GTCTG)n Simple_repeat Simple_repeat 5 154 0 8 1275 1564 53 11 0 chr1 90493188 90493378 -106702054 + B2_Mm1a SINE B2 2 193 0 8 1275 184 326 87 0 chr1 90493986 90494078 -106701354 + L2 LINE L2 2539 2638 -781 8 1275 10039 54 2 8 chr1 90494111 90495078 -106700354 + L1Md_F2 LINE L1 4334 5293 -590 8 1275 1611 43 0 0 chr1 90495078 90495264 -106700168 + B2_Mm1t SINE B2 2 187 -6 8 1275 10039 54 2 8 chr1 90495264 90495557 -106699875 + L1Md_F2 LINE L1 5294 5586 -297 8 1275 8313 42 2 2 chr1 90495557 90496553 -106698879 + L1Md_F2 LINE L1 5587 6582 0 8 1275 1665 151 43 99 chr1 90497690 90498022 -106697410 + ORR1B1 LTR MaLR 41 357 -37 8 1275 2404 99 12 0 chr1 90498022 90498345 -106697087 + ORR1A2 LTR MaLR 1 327 0 8 1275 1665 151 43 99 chr1 90498345 90498387 -106697045 + ORR1B1 LTR MaLR 358 394 0 8 1275 189 0 0 0 chr1 90498677 90498698 -106696734 + (G)n Simple_repeat Simple_repeat 1 21 0 8 1275 313 305 0 31 chr1 90498714 90498812 -106696620 + MER45A DNA Tip100 82 176 -2 8 1275 754 154 54 0 chr1 90499309 90499439 -106695993 - B1_Mus1 SINE Alu -1 147 11 8 1275 988 156 196 0 chr1 90499776 90499955 -106695477 - B3 SINE B2 -1 215 2 8 1275 1322 54 0 0 chr1 90500000 90500166 -106695266 - B2_Mm1t SINE B2 -27 166 1 1 1275 1195 60 124 6 chr1 90500212 90500381 -106695051 - B2_Mm2 SINE B2 -6 189 1 2 1275 429 20 0 0 chr1 90500398 90500448 -106694984 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1275 482 250 46 0 chr1 90500449 90500557 -106694875 - B3A SINE B2 -46 152 40 4 1275 710 290 11 92 chr1 90500561 90500823 -106694609 - B4 SINE B4 -50 242 2 5 1275 1045 154 154 0 chr1 90501288 90501483 -106693949 - URR1B DNA MER1_type 0 225 1 6 1275 3196 58 0 8 chr1 90501730 90502129 -106693303 - MTA_Mm LTR MaLR 0 396 1 7 1275 1425 143 19 132 chr1 90502329 90502692 -106692740 + RLTRETN_Mm LTR ERVK 1 322 0 8 1275 383 231 120 37 chr1 90503134 90503242 -106692190 - PB1D10 SINE Alu 0 117 1 9 1275 410 0 20 0 chr1 90503788 90503838 -106691594 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1275 387 328 41 1 chr1 90503959 90504074 -106691358 + B1F SINE Alu 2 127 0 1 1275 239 303 55 22 chr1 90503997 90504088 -106691344 + MT2B2 LTR ERVL 197 290 -294 1 1275 349 320 122 58 chr1 90504105 90504450 -106690982 - ORR1D1 LTR MaLR -2 372 6 1 1275 1893 211 55 80 chr1 90505131 90505672 -106689760 - RLTR11A LTR ERVK 0 528 1 1 1275 2212 58 65 0 chr1 90505811 90506103 -106689329 - L1_Mus1 LINE L1 0 6567 6257 1 1275 2418 87 0 3 chr1 90506111 90506433 -106688999 + L1Md_F2 LINE L1 5933 6253 -329 1 1275 792 256 42 5 chr1 90506906 90507118 -106688314 + ID_B1 SINE B4 1 220 -4 1 1275 252 376 21 0 chr1 90507125 90507218 -106688214 - MER45B DNA Tip100 -941 99 5 1 1275 288 0 0 0 chr1 90507240 90507272 -106688160 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1275 276 275 12 0 chr1 90507833 90507913 -106687519 - ID_B1 SINE B4 -28 196 116 2 1275 3062 3 0 0 chr1 90508163 90508497 -106686935 + L1Md_T LINE L1 6249 6582 0 2 1275 180 111 0 0 chr1 90508534 90508561 -106686871 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1275 221 164 32 16 chr1 90510263 90510325 -106685107 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 2 1275 687 182 80 0 chr1 90510329 90510466 -106684966 - B1_Mur4 SINE Alu 0 150 3 2 1275 3430 8 39 0 chr1 90510577 90510958 -106684474 + MTA_Mm LTR MaLR 1 396 0 2 1275 9348 35 2 1 chr1 90510958 90512055 -106683377 + MTA_Mm-int LTR MaLR 1 1098 0 2 1275 3430 8 39 0 chr1 90512055 90512436 -106682996 + MTA_Mm LTR MaLR 1 396 0 2 1275 557 256 14 43 chr1 90513294 90513433 -106681999 - MTE2b LTR MaLR 0 379 245 2 1275 1400 231 26 102 chr1 90513605 90513996 -106681436 - MTE2b LTR MaLR 0 379 19 2 1275 296 255 41 31 chr1 90514135 90514232 -106681200 - MLT1I LTR MaLR -239 172 75 2 1275 438 319 99 12 chr1 90514290 90514452 -106680980 - MER2 DNA MER2_type -5 340 165 2 1275 1517 168 35 210 chr1 90514615 90515076 -106680356 + ORR1C2 LTR MaLR 5 384 0 3 1275 1900 111 28 107 chr1 90515819 90516173 -106679259 - ORR1A4 LTR MaLR 0 329 4 3 1275 288 232 137 69 chr1 90516196 90516298 -106679134 + B1F1 SINE Alu 9 117 0 3 1275 232 289 0 95 chr1 90516367 90516451 -106678981 + ID_B1 SINE B4 148 223 -1 3 1275 669 239 116 50 chr1 90517053 90517251 -106678181 + B4A SINE B4 15 225 -67 3 1275 250 222 9 159 chr1 90517795 90517902 -106677530 - MER53 DNA hAT -2 191 101 3 1275 307 256 116 0 chr1 90518215 90518301 -106677131 - MER57-int LTR ERV1 -293 7244 7149 3 1275 246 0 88 0 chr1 90518669 90518703 -106676729 - B1_Mm SINE Alu -1 146 110 3 1275 300 53 0 0 chr1 90519321 90519359 -106676073 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1275 509 228 164 71 chr1 90520790 90521038 -106674394 - MLT1A0 LTR MaLR -2 406 81 3 1275 445 313 27 13 chr1 90521475 90521624 -106673808 + ID_B1 SINE B4 69 219 -5 4 1275 238 252 72 115 chr1 90521616 90521755 -106673677 - MTE-int LTR MaLR -318 1262 1130 4 1275 460 257 86 92 chr1 90522419 90522582 -106672850 - B3A SINE B2 -36 162 1 4 1275 378 0 0 0 chr1 90523205 90523247 -106672185 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1275 291 85 0 0 chr1 90523973 90524020 -106671412 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1275 189 0 0 0 chr1 90524467 90524488 -106670944 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1275 254 203 0 86 chr1 90524873 90524943 -106670489 + B2_Mm2 SINE B2 1 64 -131 4 1275 858 136 56 21 chr1 90525652 90525795 -106669637 + B1_Mur4 SINE Alu 1 148 -2 4 1275 314 279 35 11 chr1 90525826 90525911 -106669521 - ID_B1 SINE B4 -3 221 135 4 1275 822 113 16 179 chr1 90525911 90526095 -106669337 + RMER19B LTR ERVK 1 154 -748 4 1275 294 29 0 0 chr1 90526101 90526136 -106669296 + (CTTA)n Simple_repeat Simple_repeat 1 35 0 5 1275 728 241 69 25 chr1 90526139 90526343 -106669089 + B3 SINE B2 3 215 -1 5 1275 704 203 19 72 chr1 90526356 90526563 -106668869 - B3A SINE B2 0 198 3 5 1275 1477 34 17 6 chr1 90527205 90527383 -106668049 - B2_Mm2 SINE B2 -14 181 2 5 1275 1068 123 136 20 chr1 90527596 90527795 -106667637 - URR1A DNA MER1_type 0 226 5 5 1275 3609 24 48 0 chr1 90528342 90528758 -106666674 + RLTR10C LTR ERVK 1 436 0 5 1275 557 236 0 0 chr1 90528930 90529036 -106666396 + RSINE1 SINE B4 2 107 -58 5 1275 231 125 0 0 chr1 90529059 90529099 -106666333 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 5 1275 402 232 147 0 chr1 90529241 90529336 -106666096 + B1F SINE Alu 25 133 -16 5 1275 288 170 0 0 chr1 90529426 90529479 -106665953 + CT-rich Low_complexity Low_complexity 2 54 0 5 1275 189 122 71 24 chr1 90530673 90530715 -106664717 + MIR SINE MIR 100 143 -119 6 1275 767 240 34 84 chr1 90530995 90531232 -106664200 + URR1B DNA MER1_type 1 225 0 6 1275 394 205 83 45 chr1 90531116 90531249 -106664183 - CYRA11_Mm Unknown Y-chromosome -330 287 150 6 1275 1050 264 103 18 chr1 90531671 90532060 -106663372 + Lx9 LINE L1 7196 7617 -27 6 1275 27 0 0 0 chr1 90532091 90532118 -106663314 + AT_rich Low_complexity Low_complexity 1 27 0 6 1275 335 89 18 0 chr1 90533407 90533463 -106661969 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1275 954 12 67 6 chr1 90533624 90533789 -106661643 + (TTC)n Simple_repeat Simple_repeat 2 176 0 6 1275 844 265 206 43 chr1 90533967 90534300 -106661132 - MTE2a LTR MaLR 0 419 32 6 1275 324 0 0 0 chr1 90534965 90535001 -106660431 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1275 1315 211 78 43 chr1 90535380 90535776 -106659656 + RMER17C LTR ERVK 1 410 0 6 1275 266 257 56 14 chr1 90535783 90535854 -106659578 + ID4 SINE ID 8 81 -2 7 1275 916 283 43 18 chr1 90537161 90537442 -106657990 + B4A SINE B4 3 290 -2 7 1275 180 0 0 0 chr1 90537456 90537476 -106657956 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1275 21 0 0 0 chr1 90537497 90537518 -106657914 + AT_rich Low_complexity Low_complexity 1 21 0 7 1275 1091 261 52 40 chr1 90538514 90538862 -106656570 - Lx9 LINE L1 -610 7034 6683 7 1275 431 301 82 75 chr1 90538943 90539128 -106656304 + Lx9 LINE L1 7163 7431 -213 7 1275 242 0 61 0 chr1 90539128 90539161 -106656271 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 7 1275 430 301 82 75 chr1 90539161 90539280 -106656152 + Lx9 LINE L1 7334 7469 -4 7 1275 245 333 0 0 chr1 90539305 90539365 -106656067 + B4A SINE B4 82 141 -151 7 1275 486 146 0 0 chr1 90539390 90539472 -106655960 + (GGA)n Simple_repeat Simple_repeat 3 84 0 7 1275 207 100 0 0 chr1 90540387 90540417 -106655015 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 7 1275 377 296 112 0 chr1 90541350 90541475 -106653957 - B1F SINE Alu -10 139 1 8 1275 1456 255 30 5 chr1 90541531 90541898 -106653534 - MTEa LTR MaLR -1 378 3 8 1275 766 254 149 43 chr1 90542087 90542457 -106652975 - RLTR9E LTR ERVK 0 409 1 8 1275 1368 101 16 0 chr1 90542620 90542809 -106652623 + B2_Mm2 SINE B2 2 193 -2 8 1275 258 316 78 35 chr1 90543191 90543332 -106652100 - L2 LINE L2 -925 2494 2348 8 1275 633 294 0 12 chr1 90543345 90543510 -106651922 + RSINE1 SINE B4 3 165 0 8 1275 390 301 35 9 chr1 90543524 90543638 -106651794 - B3A SINE B2 -81 117 1 8 1275 803 247 11 6 chr1 90544162 90544337 -106651095 - MTD LTR MaLR -229 190 15 8 1275 327 169 0 0 chr1 90544348 90544419 -106651013 + (CAA)n Simple_repeat Simple_repeat 3 73 0 8 1275 407 273 171 0 chr1 90544445 90544621 -106650811 - L1MC3 LINE L1 -10 7775 7570 8 1275 3318 197 113 46 chr1 90544627 90545474 -106649958 + RMER13B LTR ERVK 1 904 -4 9 1275 369 258 187 25 chr1 90545487 90545690 -106649742 - L1MC3 LINE L1 -207 7578 7343 8 1275 1624 214 58 6 chr1 90545697 90546045 -106649387 - ORR1D2 LTR MaLR 0 370 5 9 1275 525 299 72 29 chr1 90546060 90546267 -106649165 - MLT2D LTR ERVL -1 413 198 9 1275 988 142 167 40 chr1 90546359 90546557 -106648875 + URR1B DNA MER1_type 3 225 0 9 1275 228 246 70 0 chr1 90547246 90547303 -106648129 - MLT1J LTR MaLR -54 458 398 9 1275 500 77 44 0 chr1 90547622 90547713 -106647719 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 9 1275 434 88 15 0 chr1 90547807 90547875 -106647557 + (GA)n Simple_repeat Simple_repeat 1 69 0 9 1275 321 291 8 98 chr1 90548024 90548075 -106647357 - MTEb LTR MaLR -268 111 1 9 1275 406 183 0 0 chr1 90548075 90548146 -106647286 - MLT2D LTR ERVL -646 71 1 9 1275 225 250 67 0 chr1 90548374 90548434 -106646998 + Helitron1Nb_Mam RC Helitron 25 88 -1028 9 1275 235 286 0 31 chr1 90548465 90548530 -106646902 + Helitron1Nb_Mam RC Helitron 2 64 -1052 9 1275 345 327 74 39 chr1 90548828 90548890 -106646542 + Helitron1Nb_Mam RC Helitron 335 407 -709 9 1275 207 0 0 0 chr1 90548890 90548913 -106646519 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1275 345 327 74 39 chr1 90548913 90549079 -106646353 + Helitron1Nb_Mam RC Helitron 408 570 -546 9 1275 443 308 200 53 chr1 90549197 90549629 -106645803 + MLT1D LTR MaLR 1 503 -2 1 1275 423 0 0 0 chr1 90549852 90549899 -106645533 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1275 185 256 108 75 chr1 90549922 90550015 -106645417 - L3 LINE CR1 -538 3951 3856 1 1275 210 352 11 42 chr1 90550021 90550116 -106645316 + L2b LINE L2 3201 3292 -83 1 1275 429 262 106 35 chr1 90550550 90550720 -106644712 - RMER30 DNA MER1_type -1 201 20 1 1275 331 83 33 0 chr1 90552649 90552709 -106642723 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1275 297 51 0 0 chr1 90553205 90553244 -106642188 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1275 961 243 78 0 chr1 90553263 90553469 -106641963 - B4A SINE B4 0 292 71 1 1275 387 0 0 0 chr1 90553578 90553621 -106641811 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1275 301 242 21 42 chr1 90553622 90553717 -106641715 + GA-rich Low_complexity Low_complexity 2 94 0 1 1275 346 199 0 44 chr1 90553999 90554136 -106641296 + GA-rich Low_complexity Low_complexity 1 131 0 1 1275 1055 269 42 45 chr1 90554351 90554728 -106640704 + MTEb LTR MaLR 1 376 -3 1 1275 636 239 7 61 chr1 90555678 90555825 -106639607 + B1_Mur1 SINE Alu 3 141 -8 1 1275 888 95 23 38 chr1 90555837 90555968 -106639464 + B2_Mm2 SINE B2 2 130 -65 1 1275 396 0 0 0 chr1 90555974 90556018 -106639414 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1275 207 0 0 0 chr1 90556300 90556323 -106639109 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1275 534 103 21 94 chr1 90557627 90557723 -106637709 + B1_Mus2 SINE Alu 59 147 0 1 1275 234 91 0 0 chr1 90557770 90557803 -106637629 + (CCCCCT)n Simple_repeat Simple_repeat 6 38 0 1 1275 760 216 7 28 chr1 90557820 90557963 -106637469 - B3 SINE B2 -76 140 1 1 1275 699 293 73 38 chr1 90558000 90558287 -106637145 + MLT1D LTR MaLR 209 505 0 1 1275 1457 247 46 19 chr1 90558299 90558666 -106636766 + MTEa LTR MaLR 3 379 0 1 1275 201 74 0 0 chr1 90559595 90559622 -106635810 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1275 350 180 65 24 chr1 90559892 90559990 -106635442 + PB1D10 SINE Alu 21 118 -31 1 1275 266 246 399 39 chr1 90559946 90560133 -106635299 - MER31B LTR ERV1 -19 447 194 1 1275 2118 183 69 63 chr1 90561093 90561617 -106633815 - RLTR11A2 LTR ERVK 0 527 1 1 1275 340 344 82 15 chr1 90562451 90562646 -106632786 + MLT1C LTR MaLR 178 385 -82 1 1275 333 215 31 8 chr1 90563328 90563451 -106631981 + ID_B1 SINE B4 1 214 -10 1 1275 305 185 45 30 chr1 90563393 90563460 -106631972 + B1F SINE Alu 80 147 -2 1 1275 749 230 129 58 chr1 90563559 90563868 -106631564 - RMER17C LTR ERVK 0 410 80 1 1275 1045 154 89 13 chr1 90563725 90563961 -106631471 - RMER10B LTR ERVL -130 268 15 1 1275 258 105 0 0 chr1 90564042 90564080 -106631352 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1275 434 233 92 29 chr1 90564201 90564376 -106631056 - B3 SINE B2 -6 189 1 1 1275 202 254 14 14 chr1 90564455 90564522 -106630910 + CT-rich Low_complexity Low_complexity 7 73 0 1 1275 246 32 0 0 chr1 90564522 90564553 -106630879 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1275 684 202 16 16 chr1 90564557 90564683 -106630749 - B1_Mus2 SINE Alu -20 127 2 1 1275 306 0 0 0 chr1 90564683 90564717 -106630715 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1275 1439 154 251 33 chr1 90566575 90566910 -106628522 + RMER17C LTR ERVK 1 408 -2 1 1275 956 233 38 14 chr1 90566937 90567146 -106628286 + B3 SINE B2 1 214 -2 1 1275 770 252 88 30 chr1 90567424 90567730 -106627702 + MTC LTR MaLR 18 418 -1 1 1275 241 301 0 27 chr1 90567934 90568009 -106627423 - L1MB8 LINE L1 -55 6123 6051 1 1275 213 219 123 0 chr1 90568013 90568086 -106627346 + ID2 SINE ID 2 83 0 1 1275 299 290 71 101 chr1 90568255 90568499 -106626933 + MT2B LTR ERVL 29 257 -344 1 1275 554 184 0 76 chr1 90568420 90568538 -106626894 + B1_Mus1 SINE Alu 34 142 -6 1 1275 726 63 0 45 chr1 90568543 90568675 -106626757 + (GGAGA)n Simple_repeat Simple_repeat 2 127 0 1 1275 710 285 38 10 chr1 90569070 90569279 -106626153 + B3 SINE B2 2 216 0 1 1275 620 344 39 14 chr1 90569320 90569603 -106625829 + B4A SINE B4 1 290 -2 1 1275 224 59 29 0 chr1 90569608 90569642 -106625790 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 1275 1455 194 194 0 chr1 90570173 90570395 -106625037 + MTD LTR MaLR 1 269 -150 1 159 2852 124 25 142 chr1 90570395 90570994 -106624438 + RLTR24 LTR ERV1 1 529 0 1 1276 1455 194 194 0 chr1 90570994 90571122 -106624310 + MTD LTR MaLR 270 418 -1 1 1276 694 273 63 59 chr1 90571445 90571667 -106623765 + ID_B1 SINE B4 1 223 -1 1 1276 1454 54 32 5 chr1 90571993 90572180 -106623252 - B2_Mm1a SINE B2 0 193 2 1 1276 452 228 95 102 chr1 90572785 90572922 -106622510 - RSINE1 SINE B4 -15 150 15 1 1276 450 0 0 0 chr1 90573063 90573113 -106622319 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1276 1200 94 0 0 chr1 90573200 90573360 -106622072 + B2_Mm2 SINE B2 1 160 -35 1 1276 234 0 0 0 chr1 90573361 90573387 -106622045 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 1276 596 281 18 18 chr1 90576016 90576179 -106619253 - MTEa LTR MaLR -16 363 201 1 1276 246 62 0 0 chr1 90576179 90576211 -106619221 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 1 1276 311 189 174 22 chr1 90576213 90576305 -106619127 - MTEa LTR MaLR -163 216 111 1 1276 378 0 0 0 chr1 90576305 90576347 -106619085 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1276 336 229 0 0 chr1 90576357 90576418 -106619014 - MTEa LTR MaLR -316 63 3 1 1276 291 54 0 0 chr1 90577158 90577195 -106618237 + (TATG)n Simple_repeat Simple_repeat 1 37 0 1 1276 535 281 48 43 chr1 90578791 90578999 -106616433 + MLT1A LTR MaLR 4 212 -162 1 1276 609 14 0 0 chr1 90579002 90579072 -106616360 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1276 839 235 68 5 chr1 90579747 90579952 -106615480 + ID_B1 SINE B4 7 224 0 1 1276 1296 148 41 14 chr1 90580377 90580597 -106614835 - URR1A DNA MER1_type 0 226 1 1 1276 234 0 0 0 chr1 90584083 90584109 -106611323 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 1 1276 577 312 136 16 chr1 90584469 90584726 -106610706 + RMER15 LTR ERVL 275 562 -13 1 1276 315 319 78 7 chr1 90584834 90584976 -106610456 + MER5A1 DNA MER1_type 1 152 -14 1 1276 424 274 12 0 chr1 90585365 90585449 -106609983 + ID_B1 SINE B4 10 94 -130 1 1276 183 184 0 0 chr1 90585915 90585953 -106609479 + GA-rich Low_complexity Low_complexity 2 39 0 1 1276 225 350 178 17 chr1 90586502 90586682 -106608750 + MLT1D LTR MaLR 4 212 -293 1 1276 449 261 82 32 chr1 90587149 90587307 -106608125 - MER20 DNA MER1_type -53 166 1 1 1276 233 186 0 0 chr1 90587754 90587797 -106607635 - MLT1L LTR MaLR -382 228 186 1 1276 225 0 0 0 chr1 90587925 90587950 -106607482 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1276 1140 49 0 0 chr1 90588098 90588241 -106607191 + (GGGAGA)n Simple_repeat Simple_repeat 2 144 0 1 1276 273 332 102 51 chr1 90589447 90589663 -106605769 - LTR86B1 LTR ERVL -41 452 226 1 1276 637 231 75 27 chr1 90589700 90589887 -106605545 - B3A SINE B2 0 198 3 1 1276 419 237 41 58 chr1 90591384 90591505 -106603927 + PB1D9 SINE Alu 2 120 0 1 1276 266 208 28 0 chr1 90591505 90591577 -106603855 + GA-rich Low_complexity Low_complexity 4 77 0 1 1276 5062 58 0 3 chr1 90592070 90592692 -106602740 - L1_Mus1 LINE L1 0 6567 5948 1 1276 438 284 0 8 chr1 90593299 90593416 -106602016 + B4A SINE B4 1 116 -176 1 1276 1687 5 27 0 chr1 90593542 90593730 -106601702 + B2_Mm1a SINE B2 1 193 0 1 1276 300 293 121 0 chr1 90593785 90593901 -106601531 - MIR SINE MIR -16 246 117 1 1276 695 269 86 0 chr1 90593949 90594135 -106601297 - ID_B1 SINE B4 -20 204 3 1 1276 267 152 0 0 chr1 90596670 90596716 -106598716 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1276 234 0 0 0 chr1 90599839 90599865 -106595567 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1276 466 275 65 39 chr1 90600626 90600781 -106594651 + RSINE1 SINE B4 2 160 -5 1 1276 363 23 0 0 chr1 90601230 90601274 -106594158 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1276 244 281 85 0 chr1 90601691 90601773 -106593659 + MIRb SINE MIR 179 267 -1 1 1276 769 185 119 23 chr1 90601811 90601988 -106593444 + B2_Mm2 SINE B2 1 194 -1 1 1276 381 242 132 0 chr1 90603641 90603732 -106591700 - PB1D10 SINE Alu -14 103 1 1 1276 558 41 0 0 chr1 90604010 90604083 -106591349 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1276 441 0 0 0 chr1 90604083 90604131 -106591301 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1276 282 317 29 19 chr1 90606393 90606496 -106588936 + ORR1E LTR MaLR 256 359 0 1 1276 887 225 97 18 chr1 90607097 90607314 -106588118 + RMER15 LTR ERVL 341 574 -1 1 1276 2308 104 0 6 chr1 90607335 90607654 -106587778 + ORR1A3 LTR MaLR 2 318 -8 1 1276 697 301 20 25 chr1 90609381 90609582 -106585850 + B3 SINE B2 15 214 -2 1 1276 225 0 0 0 chr1 90609650 90609675 -106585757 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1276 246 345 0 11 chr1 90609678 90609769 -106585663 + PB1D9 SINE Alu 20 109 -11 1 1276 486 0 0 0 chr1 90609773 90609827 -106585605 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1276 246 81 0 0 chr1 90610154 90610191 -106585241 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1 1276 3077 33 14 0 chr1 90610842 90611241 -106584191 + L1Md_F2 LINE L1 6198 6582 0 1 1276 1694 137 59 10 chr1 90612678 90612966 -106582466 + MTD LTR MaLR 118 419 0 2 1276 378 0 0 0 chr1 90612980 90613022 -106582410 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1276 1143 117 0 0 chr1 90613038 90613218 -106582214 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1276 797 243 5 16 chr1 90613498 90613682 -106581750 - B3 SINE B2 -34 182 1 2 1276 226 204 20 0 chr1 90614181 90614230 -106581202 - MTEb LTR MaLR -1 378 329 2 1276 1352 272 29 15 chr1 90614230 90614573 -106580859 - ORR1D2 LTR MaLR 0 370 23 2 1276 483 244 16 16 chr1 90614567 90614696 -106580736 - MTEb LTR MaLR -39 340 212 2 1276 966 198 35 25 chr1 90614740 90614942 -106580490 - MTEb LTR MaLR -174 205 2 2 1276 206 233 0 0 chr1 90615205 90615248 -106580184 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1276 360 358 8 8 chr1 90615274 90615395 -106580037 + MIRb SINE MIR 27 147 -121 2 1276 328 339 29 35 chr1 90615585 90615756 -106579676 + MIR SINE MIR 93 262 0 2 1276 212 356 77 24 chr1 90616368 90616514 -106578918 - MER5A DNA MER1_type -6 183 21 2 1276 257 205 101 67 chr1 90616570 90616659 -106578773 + Charlie4z DNA MER1_type 47 138 -29 2 1276 427 301 76 32 chr1 90617577 90617735 -106577697 + MER34A LTR ERV1 2 166 -405 2 1276 363 330 77 29 chr1 90617885 90618094 -106577338 + MER34A LTR ERV1 302 520 -67 2 1276 364 360 22 7 chr1 90618166 90618303 -106577129 + MLT1A1 LTR MaLR 1 139 -269 2 1276 1641 213 39 12 chr1 90618328 90618666 -106576766 - MTD LTR MaLR -5 414 68 2 1276 717 137 0 0 chr1 90618666 90618783 -106576649 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 2 1276 363 96 0 0 chr1 90618776 90618828 -106576604 + (TCC)n Simple_repeat Simple_repeat 3 54 0 2 1276 258 182 208 0 chr1 90619417 90619494 -106575938 - MTD LTR MaLR -315 104 12 2 1276 1089 83 14 0 chr1 90619541 90619685 -106575747 + B1_Mus1 SINE Alu 1 146 -2 2 1276 894 266 147 67 chr1 90619693 90620007 -106575425 + MTEa LTR MaLR 39 377 -2 2 1276 712 244 78 27 chr1 90620007 90620247 -106575185 + MLT1A1 LTR MaLR 134 408 0 2 1276 743 296 151 57 chr1 90620304 90620676 -106574756 + MTD LTR MaLR 1 407 -12 2 1276 370 346 49 62 chr1 90620678 90620903 -106574529 + MLT1A LTR MaLR 153 374 0 2 1276 517 325 85 0 chr1 90620917 90621117 -106574315 + LTR83 LTR ERVL 554 770 -10 2 1276 1098 298 34 56 chr1 90621216 90621628 -106573804 + MTD LTR MaLR 3 405 -14 2 1276 290 375 108 20 chr1 90621889 90622139 -106573293 - Helitron3Na_Mam RC Helitron -120 366 95 2 1276 788 274 60 43 chr1 90622684 90622699 -106572733 - B4A SINE B4 -1 291 278 2 1276 711 0 0 0 chr1 90622699 90622778 -106572654 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 1276 788 274 60 43 chr1 90622778 90623044 -106572388 - B4A SINE B4 -15 277 5 2 1276 366 23 0 0 chr1 90623049 90623092 -106572340 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1276 195 42 0 0 chr1 90623092 90623116 -106572316 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1276 356 299 0 0 chr1 90623121 90623198 -106572234 + B4A SINE B4 131 207 -85 2 1276 634 170 9 22 chr1 90623245 90623475 -106571957 + (CA)n Simple_repeat Simple_repeat 1 227 0 2 1276 404 310 132 53 chr1 90623666 90623969 -106571463 - L1MC4 LINE L1 -3729 2486 2160 2 1276 438 20 0 0 chr1 90624006 90624057 -106571375 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1276 211 140 80 0 chr1 90624324 90624374 -106571058 + (CTATT)n Simple_repeat Simple_repeat 4 57 0 2 1276 2547 65 15 6 chr1 90624485 90624809 -106570623 - ORR1A2 LTR MaLR 0 327 1 2 1276 456 19 0 0 chr1 90626565 90626618 -106568814 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1276 462 299 49 72 chr1 90626989 90627212 -106568220 + B4A SINE B4 2 219 -73 2 1276 266 280 140 107 chr1 90627868 90628140 -106567292 + B4 SINE B4 1 281 -11 2 1276 573 193 4 26 chr1 90628162 90628406 -106567026 + (CATA)n Simple_repeat Simple_repeat 1 238 0 2 1276 216 184 20 39 chr1 90628973 90629024 -106566408 + GA-rich Low_complexity Low_complexity 6 55 0 2 1276 927 297 32 0 chr1 90629091 90629340 -106566092 + B4A SINE B4 1 257 -35 2 1276 333 0 0 0 chr1 90629357 90629394 -106566038 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1276 237 278 89 0 chr1 90629574 90629664 -106565768 + RMER5 LTR ERV1 180 277 -257 2 1276 1179 302 74 31 chr1 90629669 90630154 -106565278 + RMER20A LTR ERVK 11 516 0 2 1276 841 249 29 19 chr1 90630190 90630399 -106565033 + RMER5 LTR ERV1 322 532 -2 2 1276 8246 56 1 0 chr1 90630451 90631590 -106563842 - L1_Mus1 LINE L1 0 6567 5428 2 1276 728 266 28 0 chr1 90631636 90631813 -106563619 + B3A SINE B2 1 182 -16 2 1276 370 155 0 0 chr1 90631871 90631929 -106563503 - L1_Rod LINE L1 -167 5680 5623 2 1276 994 153 166 18 chr1 90631929 90632158 -106563274 + ORR1C2 LTR MaLR 62 384 0 2 1276 658 281 59 70 chr1 90634276 90634563 -106560869 - B4 SINE B4 -4 288 5 2 1276 369 0 0 0 chr1 90635399 90635440 -106559992 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1276 775 214 7 0 chr1 90635862 90636016 -106559416 + ID_B1 SINE B4 67 221 -3 2 1276 380 253 109 7 chr1 90636016 90636163 -106559269 + L1MA7 LINE L1 6108 6269 -22 2 1276 243 0 0 0 chr1 90637092 90637119 -106558313 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 2 1276 1118 254 93 0 chr1 90637160 90637439 -106557993 - MTEa LTR MaLR -72 307 3 2 1276 187 152 21 21 chr1 90637577 90637624 -106557808 + GA-rich Low_complexity Low_complexity 1 47 0 2 1276 202 170 61 41 chr1 90638015 90638064 -106557368 - L2a LINE L2 -18 3408 3359 2 1276 783 224 141 56 chr1 90638098 90638368 -106557064 - MTD LTR MaLR -40 379 87 2 1276 976 333 34 11 chr1 90639510 90639892 -106555540 - Lx8 LINE L1 -367 7106 6716 2 1276 563 304 6 0 chr1 90640074 90640232 -106555200 - RSINE1 SINE B4 -4 161 3 2 1276 886 290 57 27 chr1 90640291 90640553 -106554879 - B4 SINE B4 -21 271 2 2 1276 211 283 105 85 chr1 90640574 90640821 -106554611 - B4 SINE B4 -6 286 35 2 1276 227 195 0 0 chr1 90641141 90641182 -106554250 - B3A SINE B2 -156 42 2 2 1276 300 291 90 9 chr1 90642303 90642414 -106553018 + PB1 SINE Alu 8 127 0 2 1276 31 0 0 0 chr1 90642421 90642452 -106552980 + AT_rich Low_complexity Low_complexity 1 31 0 2 1276 1106 75 7 0 chr1 90643039 90643185 -106552247 + B1_Mus1 SINE Alu 1 147 -1 2 1276 513 263 64 0 chr1 90643370 90643526 -106551906 - B4A SINE B4 -121 171 6 2 1276 276 30 0 0 chr1 90644082 90644115 -106551317 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1276 2018 114 97 18 chr1 90644147 90644487 -106550945 + ORR1B2 LTR MaLR 1 367 0 2 1276 379 336 66 0 chr1 90645388 90645510 -106549922 + RSINE1 SINE B4 2 131 -34 2 1276 371 287 73 0 chr1 90646177 90646341 -106549091 - L1M5 LINE L1 -415 5764 5589 2 1276 599 299 87 22 chr1 90646349 90646597 -106548835 + B4A SINE B4 2 292 0 2 1276 1624 213 93 3 chr1 90646843 90647177 -106548255 + ORR1D2 LTR MaLR 6 369 -1 2 1276 345 237 48 75 chr1 90647732 90647743 -106547689 + CYRA11_Mm Unknown Y-chromosome 163 224 -393 2 1276 738 126 0 40 chr1 90647743 90647867 -106547565 - URR1B DNA MER1_type 0 225 107 2 1276 345 237 48 75 chr1 90647867 90647878 -106547554 + CYRA11_Mm Unknown Y-chromosome 225 304 -313 2 1276 1900 233 133 61 chr1 90649327 90649430 -106546002 - Lx9 LINE L1 -1 7643 7512 2 1276 180 0 0 0 chr1 90649430 90649450 -106545982 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1276 1900 233 133 61 chr1 90649450 90650035 -106545397 - Lx9 LINE L1 -133 7511 6905 2 1276 297 0 0 0 chr1 90650098 90650131 -106545301 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1276 942 252 93 4 chr1 90650346 90650593 -106544839 + B4 SINE B4 1 269 -23 2 1276 471 18 0 0 chr1 90650612 90650668 -106544764 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1276 771 200 0 27 chr1 90650754 90650903 -106544529 + B1_Mur2 SINE Alu 1 145 -4 2 1276 2113 111 9 66 chr1 90651363 90651712 -106543720 + ORR1A4 LTR MaLR 1 329 0 2 1276 259 145 123 55 chr1 90651966 90652039 -106543393 + ETnERV2-int LTR ERVK 7327 7404 -2 2 1276 2567 99 11 14 chr1 90652040 90652409 -106543023 + RLTR9A LTR ERVK 1 368 0 2 1276 210 154 0 0 chr1 90652677 90652716 -106542716 + A-rich Low_complexity Low_complexity 2 40 0 2 1276 391 260 48 0 chr1 90654855 90654959 -106540473 - Tigger5 DNA MER2_type 0 2406 2298 2 1276 242 340 10 41 chr1 90654984 90655082 -106540350 - Tigger5 DNA MER2_type -2271 135 41 2 1276 318 321 102 24 chr1 90655269 90655435 -106539997 - MLT1C LTR MaLR -251 216 38 2 1276 1211 61 0 0 chr1 90656966 90657114 -106538318 + B1_Mus1 SINE Alu 1 148 0 2 1276 465 111 22 22 chr1 90657114 90657206 -106538226 + A-rich Low_complexity Low_complexity 2 93 0 2 1276 360 245 28 12 chr1 90657284 90657373 -106538059 + ID4_ SINE ID 10 101 -51 2 1276 3294 195 124 48 chr1 90657373 90658170 -106537262 - RMER13A LTR ERVK -2 858 1 2 1276 287 281 27 64 chr1 90658170 90658197 -106537235 + BC1_Mm scRNA scRNA 102 122 -30 2 1276 270 0 0 0 chr1 90658324 90658354 -106537078 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2 1276 870 240 61 40 chr1 90658494 90658796 -106536636 + MTE2a LTR MaLR 20 321 -100 2 1276 184 297 105 26 chr1 90659009 90659085 -106536347 + MIRm SINE MIR 195 276 0 2 1276 186 133 0 0 chr1 90659258 90659288 -106536144 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2 1276 987 156 0 0 chr1 90659289 90659468 -106535964 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1276 307 244 111 0 chr1 90659614 90659704 -106535728 + RSINE1 SINE B4 3 102 -63 2 1276 1034 260 65 49 chr1 90659706 90660013 -106535419 - MTE2a LTR MaLR -10 369 58 2 1276 906 281 91 124 chr1 90660015 90660674 -106534758 + RLTR26 LTR ERVK 2 638 -4 2 1276 312 238 32 97 chr1 90660651 90660744 -106534688 - MTE2a LTR MaLR -292 87 1 2 1276 949 134 249 12 chr1 90662293 90662466 -106532966 + B3 SINE B2 2 215 -1 2 1276 182 254 9 0 chr1 90662651 90662761 -106532671 + (TGGG)n Simple_repeat Simple_repeat 3 113 0 2 1276 236 295 26 0 chr1 90663327 90663405 -106532027 - ID4_ SINE ID -2 81 2 2 1276 251 28 28 0 chr1 90664884 90664920 -106530512 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1276 966 229 68 10 chr1 90665153 90665360 -106530072 + ID_B1 SINE B4 6 224 0 2 1276 2023 147 67 24 chr1 90665510 90665880 -106529552 - MTD LTR MaLR 0 419 34 2 1276 1191 168 15 10 chr1 90665880 90666084 -106529348 - URR1B DNA MER1_type 0 225 21 3 1276 643 294 120 60 chr1 90667144 90667560 -106527872 - RMER13A LTR ERVK -394 466 26 3 1276 899 138 19 135 chr1 90668205 90668346 -106527086 + MTB_Mm LTR MaLR 141 361 -46 3 1276 2374 75 3 6 chr1 90668346 90668666 -106526766 - L1_Mus2 LINE L1 -1 6565 6247 3 1276 899 147 29 134 chr1 90668666 90668795 -106526637 + MTB_Mm LTR MaLR 197 407 0 3 1276 495 220 45 97 chr1 90668834 90669008 -106526424 + RMER17C LTR ERVK 20 179 -231 3 1276 1170 60 0 0 chr1 90669008 90669159 -106526273 + (TCTCC)n Simple_repeat Simple_repeat 4 154 0 3 1276 786 158 137 70 chr1 90669159 90669472 -106525960 + RMER17C LTR ERVK 77 410 0 3 1276 449 260 89 8 chr1 90669472 90669595 -106525837 - ID_B1 SINE B4 -16 208 76 3 1276 264 270 134 34 chr1 90670346 90670465 -106524967 + B4A SINE B4 14 144 -148 3 1276 198 0 0 0 chr1 90670551 90670573 -106524859 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1276 696 83 0 0 chr1 90671184 90671280 -106524152 + (AGGGGG)n Simple_repeat Simple_repeat 2 97 0 3 1276 399 276 34 44 chr1 90671663 90671868 -106523564 + L1MB8 LINE L1 5762 5964 -214 3 1276 1093 258 20 16 chr1 90673175 90673227 -106522205 + L1_Mus1 LINE L1 6322 6376 -624 3 1276 1081 60 27 0 chr1 90673227 90673377 -106522055 - L1_Mus1 LINE L1 0 6567 6414 3 1276 2095 55 0 0 chr1 90673377 90673628 -106521804 + L1_Mus1 LINE L1 6029 6276 -291 3 1276 1086 205 10 0 chr1 90673647 90673842 -106521590 + B3 SINE B2 1 197 -19 3 1276 279 294 147 18 chr1 90674845 90675063 -106520369 + L2 LINE L2 2133 2378 -1041 3 1276 324 0 0 0 chr1 90676251 90676287 -106519145 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1276 2212 99 18 9 chr1 90676296 90676622 -106518810 - ORR1A4 LTR MaLR 0 329 1 3 1276 6143 118 41 4 chr1 90678207 90679131 -106516301 - RMER17B LTR ERVK 0 958 1 3 1276 236 353 94 38 chr1 90679825 90679984 -106515448 - MER91A DNA Tip100 -28 168 1 3 1276 1229 153 8 105 chr1 90680024 90680272 -106515160 - URR1B DNA MER1_type 0 225 2 3 1276 480 35 0 0 chr1 90680729 90680787 -106514645 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1276 1171 72 12 0 chr1 90681091 90681258 -106514174 + (TC)n Simple_repeat Simple_repeat 1 169 0 3 1276 414 0 0 0 chr1 90681258 90681303 -106514129 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1276 526 131 10 10 chr1 90681479 90681579 -106513853 + CT-rich Low_complexity Low_complexity 2 101 0 3 1276 305 344 36 0 chr1 90682190 90682367 -106513065 + L1MC3 LINE L1 6702 6922 -960 3 1276 413 104 13 0 chr1 90682389 90682466 -106512966 + (GA)n Simple_repeat Simple_repeat 2 79 0 3 1276 279 0 0 0 chr1 90682629 90682660 -106512772 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1276 292 298 58 23 chr1 90682661 90682747 -106512685 - RSINE1 SINE B4 -1 164 76 3 1276 511 298 49 7 chr1 90683155 90683297 -106512135 + RSINE1 SINE B4 5 152 -13 3 1276 645 284 26 5 chr1 90683744 90683935 -106511497 + B3A SINE B2 4 198 0 3 1276 1845 158 23 140 chr1 90683937 90684372 -106511060 - ORR1C2 LTR MaLR 0 384 1 3 1276 450 360 69 25 chr1 90684392 90684637 -106510795 + L1M5 LINE L1 2210 2465 -3681 3 1276 305 284 0 22 chr1 90684647 90684737 -106510695 - PB1D10 SINE Alu -2 115 28 3 1276 654 318 38 12 chr1 90684840 90685124 -106510308 + B4 SINE B4 1 292 0 3 1276 720 178 0 0 chr1 90685124 90685304 -106510128 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1276 461 124 10 0 chr1 90685321 90685418 -106510014 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 1276 751 338 82 60 chr1 90685437 90686108 -106509324 + L1M5 LINE L1 2676 3373 -2773 3 1276 2359 77 13 0 chr1 90686356 90686668 -106508764 - ORR1A2 LTR MaLR -11 316 1 3 1276 279 279 0 14 chr1 90686970 90687039 -106508393 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1276 580 280 39 64 chr1 90687084 90687317 -106508115 - B4 SINE B4 -63 229 3 3 1276 1281 110 15 25 chr1 90687930 90688126 -106507306 - B2_Mm2 SINE B2 -1 194 1 3 1276 472 190 0 0 chr1 90688798 90688877 -106506555 + B1F SINE Alu 70 148 -1 3 1276 485 156 10 0 chr1 90688894 90688990 -106506442 + GA-rich Low_complexity Low_complexity 3 99 0 3 1276 202 122 19 75 chr1 90690109 90690162 -106505270 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 3 1276 651 204 51 0 chr1 90691401 90691538 -106503894 - RSINE1 SINE B4 -19 146 3 3 1276 210 222 0 0 chr1 90692136 90692172 -106503260 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 3 1276 376 362 114 15 chr1 90692690 90693024 -106502408 - L1MC LINE L1 -2971 3175 2809 3 1276 216 48 0 67 chr1 90693642 90693687 -106501745 + (CACCC)n Simple_repeat Simple_repeat 5 46 0 3 1276 759 230 17 111 chr1 90694114 90694349 -106501083 - B3 SINE B2 0 216 4 3 1276 23 0 0 0 chr1 90694454 90694477 -106500955 + AT_rich Low_complexity Low_complexity 1 23 0 3 1276 256 355 0 11 chr1 90694997 90695091 -106500341 + RMER5 LTR ERV1 409 501 -33 3 1276 210 91 0 0 chr1 90696128 90696161 -106499271 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 3 1276 378 0 0 0 chr1 90696479 90696521 -106498911 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1276 1758 116 165 56 chr1 90697661 90698018 -106497414 - RMER10B LTR ERVL 0 398 3 3 1276 609 110 0 0 chr1 90698018 90698109 -106497323 + (GGAA)n Simple_repeat Simple_repeat 1 91 0 3 1276 478 310 71 36 chr1 90698568 90698792 -106496640 + MER63C DNA AcHobo 29 260 -670 3 1276 897 58 0 0 chr1 90698836 90698956 -106496476 + (TATTG)n Simple_repeat Simple_repeat 3 122 0 3 1276 554 231 138 66 chr1 90698968 90699135 -106496297 - B3A SINE B2 -18 180 2 3 1276 342 230 131 15 chr1 90699494 90699631 -106495801 + MTEa LTR MaLR 202 354 -25 3 1276 3757 146 7 7 chr1 90699803 90700398 -106495034 + RLTR17 LTR ERVK 98 692 0 3 159 1094 82 0 0 chr1 90701804 90701938 -106493494 + B1_Mus1 SINE Alu 3 136 -12 3 1277 261 0 0 0 chr1 90701938 90701967 -106493465 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 1277 3600 57 23 23 chr1 90702567 90703049 -106492383 + RLTR45 LTR ERVK 1 482 0 3 1277 239 274 143 17 chr1 90703642 90703761 -106491671 + LTR50 LTR ERVL 24 157 -638 3 1277 2531 126 31 44 chr1 90704193 90704650 -106490782 - RLTR11B LTR ERVK 0 453 3 3 1277 190 338 78 0 chr1 90705240 90705317 -106490115 + L3 LINE CR1 4390 4472 -17 3 1277 493 226 23 46 chr1 90706102 90706232 -106489200 - RSINE1 SINE B4 -37 128 2 3 1277 275 323 129 95 chr1 90706369 90706663 -106488769 - Tigger5 DNA MER2_type -100 318 15 3 1277 1042 238 85 26 chr1 90707466 90707738 -106487694 - MTD LTR MaLR 0 419 132 3 1277 992 304 80 150 chr1 90707733 90708028 -106487404 + MTE-int LTR MaLR 390 701 -879 3 1277 435 38 0 0 chr1 90708028 90708081 -106487351 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 1277 992 304 80 150 chr1 90708081 90708539 -106486893 + MTE-int LTR MaLR 702 1090 -490 3 1277 1256 325 23 38 chr1 90708821 90709279 -106486153 + MTE-int LTR MaLR 1077 1527 -53 3 1277 473 302 66 36 chr1 90709279 90709587 -106485845 + MTE2a LTR MaLR 1 418 -1 3 1277 315 254 103 79 chr1 90711049 90711301 -106484131 + L1MEg LINE L1 1268 1525 -4559 3 1277 704 275 61 92 chr1 90711836 90712164 -106483268 + MTEb LTR MaLR 61 378 -1 3 1277 1132 163 59 0 chr1 90712231 90712434 -106482998 + B3 SINE B2 2 216 0 3 1277 915 138 223 6 chr1 90712457 90712632 -106482800 + B3 SINE B2 4 216 0 3 1277 733 246 59 0 chr1 90712657 90712844 -106482588 + B3A SINE B2 1 198 0 3 1277 1033 282 14 0 chr1 90713136 90713427 -106482005 - L1MD LINE L1 -471 5771 5477 3 1277 338 273 92 12 chr1 90713436 90713599 -106481833 - L1MDa LINE L1 -5454 1179 1004 3 1277 439 297 196 20 chr1 90713952 90714080 -106481352 - L1MDa LINE L1 -6236 397 250 3 1277 281 0 82 0 chr1 90714080 90714129 -106481303 + (TTG)n Simple_repeat Simple_repeat 2 54 0 3 1277 439 297 196 20 chr1 90714129 90714306 -106481126 - L1MDa LINE L1 -6384 249 38 3 1277 2068 220 35 72 chr1 90714410 90714979 -106480453 + RLTR18 LTR ERVK 16 563 -53 3 1277 283 234 94 77 chr1 90715152 90715264 -106480168 + PB1D10 SINE Alu 5 120 0 3 1277 28 0 0 0 chr1 90715264 90715292 -106480140 + AT_rich Low_complexity Low_complexity 1 28 0 3 1277 1112 287 36 7 chr1 90715299 90715576 -106479856 + B4 SINE B4 8 292 0 3 1277 580 210 6 6 chr1 90715576 90715734 -106479698 + (TA)n Simple_repeat Simple_repeat 1 158 0 3 1277 751 215 7 0 chr1 90716066 90716210 -106479222 - RSINE1 SINE B4 -19 146 2 3 1277 216 67 0 0 chr1 90716892 90716922 -106478510 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1277 485 288 23 0 chr1 90717201 90717333 -106478099 - RMER15 LTR ERVL -13 562 428 3 1277 1751 156 118 11 chr1 90717631 90717987 -106477445 - ORR1B1 LTR MaLR 0 394 1 3 1277 860 303 17 17 chr1 90718786 90719075 -106476357 + B4A SINE B4 4 292 0 3 1277 627 163 0 0 chr1 90719076 90719223 -106476209 + (CA)n Simple_repeat Simple_repeat 2 148 0 3 1277 519 177 0 0 chr1 90719243 90719373 -106476059 + (CA)n Simple_repeat Simple_repeat 1 130 0 3 1277 282 29 0 0 chr1 90719379 90719414 -106476018 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1277 333 0 0 0 chr1 90719414 90719450 -106475982 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1277 358 268 106 0 chr1 90719586 90719709 -106475723 + Lx9 LINE L1 7329 7464 -180 3 1277 465 19 0 0 chr1 90719709 90719763 -106475669 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1277 1973 159 22 34 chr1 90719829 90720187 -106475245 + ORR1D1 LTR MaLR 18 371 -3 3 1277 26 0 0 0 chr1 90720227 90720253 -106475179 + AT_rich Low_complexity Low_complexity 1 26 0 3 1277 508 236 160 49 chr1 90721095 90721358 -106474074 + B4A SINE B4 1 292 0 3 1277 445 288 47 86 chr1 90722471 90722725 -106472707 - MTEb LTR MaLR 0 379 124 3 1277 1985 253 81 103 chr1 90722733 90723685 -106471747 + RMER17B LTR ERVK 15 945 -13 3 1277 189 0 0 0 chr1 90724461 90724482 -106470950 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1277 946 182 59 0 chr1 90724858 90725028 -106470404 + B3 SINE B2 35 214 -2 4 1277 2198 107 72 137 chr1 90725757 90726202 -106469230 + MTC LTR MaLR 5 420 -1 4 1277 4499 18 0 0 chr1 90726302 90726795 -106468637 - MT2_Mm LTR ERVL 0 493 1 4 1277 319 0 0 0 chr1 90726795 90726833 -106468599 - MERVL-int LTR ERVL 0 5485 5448 4 1277 403 167 46 35 chr1 90726833 90726920 -106468512 - ORR1A3-int LTR MaLR -1323 640 553 4 1277 48523 14 6 0 chr1 90726920 90732246 -106463186 - MERVL-int LTR ERVL -125 5360 1 4 1277 4499 18 0 0 chr1 90732246 90732739 -106462693 - MT2_Mm LTR ERVL 0 493 1 4 1277 1190 62 0 7 chr1 90733069 90733216 -106462216 - B1_Mus2 SINE Alu 0 147 2 4 1277 247 182 0 39 chr1 90734405 90734508 -106460924 + (TCTCTG)n Simple_repeat Simple_repeat 4 102 0 4 1277 243 79 0 0 chr1 90735245 90735283 -106460149 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1277 207 0 0 0 chr1 90736019 90736042 -106459390 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1277 225 283 73 42 chr1 90736287 90736383 -106459049 - MER5A DNA MER1_type -26 163 65 4 1277 225 0 0 0 chr1 90737391 90737416 -106458016 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4 1277 189 294 0 56 chr1 90737902 90737974 -106457458 - MIR3 SINE MIR -129 79 12 4 1277 954 257 49 148 chr1 90738046 90738457 -106456975 + ORR1D2 LTR MaLR 1 370 0 4 1277 537 176 9 44 chr1 90739410 90739523 -106455909 + RLTR42-int LTR ERVK 1198 1306 -4216 4 1277 1444 167 188 13 chr1 90740317 90740621 -106454811 - ORR1D1 LTR MaLR 0 374 18 4 1277 1159 255 90 10 chr1 90740844 90741145 -106454287 + Lx6 LINE L1 7136 7460 0 4 1277 423 0 0 0 chr1 90741391 90741438 -106453994 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1277 423 0 0 0 chr1 90742623 90742670 -106452762 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1277 874 217 55 10 chr1 90742830 90743030 -106452402 + B3 SINE B2 2 210 -6 4 1277 372 167 0 0 chr1 90744904 90744976 -106450456 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1277 250 146 0 0 chr1 90745377 90745418 -106450014 + RMER17C LTR ERVK 1 41 -369 4 1277 2067 139 0 64 chr1 90745444 90745682 -106449750 - RMER17C LTR ERVK -13 397 181 4 1277 1022 46 19 19 chr1 90745682 90745836 -106449596 + (GAGAA)n Simple_repeat Simple_repeat 5 158 0 4 1277 2067 139 0 64 chr1 90745836 90746020 -106449412 - RMER17C LTR ERVK -230 180 2 4 1277 444 347 0 11 chr1 90746701 90746879 -106448553 + (TGG)n Simple_repeat Simple_repeat 3 178 0 4 1277 1505 220 114 11 chr1 90747103 90747471 -106447961 + MTD LTR MaLR 11 416 -3 4 1277 348 307 148 53 chr1 90748072 90748375 -106447057 + MLT1D LTR MaLR 5 336 -169 4 1277 245 215 215 0 chr1 90748387 90748480 -106446952 + MLT1D LTR MaLR 376 488 -17 4 1277 522 249 66 34 chr1 90748881 90749146 -106446286 + RLTR5_Mm LTR ERV1 249 532 -96 4 1277 474 286 19 0 chr1 90749146 90749251 -106446181 - B4A SINE B4 -182 110 4 4 1277 32832 99 10 2 chr1 90749982 90756032 -106439400 - L1_Mus1 LINE L1 -1 6566 467 4 1277 278 267 0 75 chr1 90756075 90756168 -106439264 - L2b LINE L2 0 3375 3290 4 1277 336 310 43 0 chr1 90756297 90756413 -106439019 + MTD LTR MaLR 1 121 -298 4 1277 246 32 0 0 chr1 90757739 90757770 -106437662 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1277 441 0 0 0 chr1 90757770 90757818 -106437614 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1277 749 235 60 22 chr1 90758381 90758543 -106436889 + B3A SINE B2 9 179 -19 4 1277 191 36 36 0 chr1 90758543 90758571 -106436861 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1277 749 235 60 22 chr1 90758571 90758591 -106436841 + B3A SINE B2 180 198 0 4 1277 1200 145 69 14 chr1 90758965 90759182 -106436250 - BGLII_A LTR ERVK 0 445 217 4 1277 462 114 0 0 chr1 90759383 90759453 -106435979 + (TCTCCC)n Simple_repeat Simple_repeat 3 72 0 4 1277 1116 272 72 52 chr1 90759637 90759986 -106435446 + ORR1E LTR MaLR 1 356 -3 4 1277 373 333 21 0 chr1 90761714 90761858 -106433574 - MLT1A0 LTR MaLR -7 358 212 4 1277 660 254 25 110 chr1 90762571 90762889 -106432543 + B4 SINE B4 1 291 -1 4 1277 944 18 9 0 chr1 90763043 90763157 -106432275 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 4 1277 1146 166 199 55 chr1 90763214 90763556 -106431876 + RMER10B LTR ERVL 8 398 0 4 1277 282 316 126 17 chr1 90763823 90763997 -106431435 - Lx8 LINE L1 -277 7196 7004 4 1277 1066 255 62 59 chr1 90764659 90765013 -106430419 + ORR1E LTR MaLR 1 355 -4 4 1277 348 301 24 12 chr1 90765226 90765391 -106430041 + GA-rich Low_complexity Low_complexity 5 171 0 4 1277 778 273 157 30 chr1 90765395 90765897 -106429535 - L1MA7 LINE L1 -98 6193 5628 4 1277 195 69 0 0 chr1 90766407 90766436 -106428996 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1277 1123 82 100 56 chr1 90766906 90766927 -106428505 - B2_Mm2 SINE B2 -6 189 171 4 1277 964 128 23 0 chr1 90766927 90767099 -106428333 + CT-rich Low_complexity Low_complexity 3 178 0 4 1277 1123 82 100 56 chr1 90767099 90767257 -106428175 - B2_Mm2 SINE B2 -25 170 2 4 1277 2283 105 6 58 chr1 90767529 90767873 -106427559 - ORR1A3 LTR MaLR 0 326 1 4 1277 244 282 30 183 chr1 90768288 90768518 -106426914 - RMER17C LTR ERVK -70 340 146 4 1277 237 316 8 25 chr1 90768679 90768799 -106426633 + (CATATA)n Simple_repeat Simple_repeat 1 118 0 4 1277 935 279 16 43 chr1 90768911 90769169 -106426263 + MTEa LTR MaLR 9 259 -120 4 1277 739 259 25 12 chr1 90769460 90769620 -106425812 - B3 SINE B2 -54 162 1 4 1277 272 330 98 0 chr1 90769766 90769878 -106425554 + MTEb LTR MaLR 203 325 -54 4 1277 330 26 0 0 chr1 90769878 90769917 -106425515 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 4 1277 336 159 16 0 chr1 90769918 90769981 -106425451 + MTEb LTR MaLR 315 378 -1 4 1277 459 0 0 0 chr1 90770590 90770641 -106424791 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1277 21 0 0 0 chr1 90772329 90772350 -106423082 + AT_rich Low_complexity Low_complexity 1 21 0 4 1277 253 217 0 48 chr1 90772623 90772686 -106422746 + G-rich Low_complexity Low_complexity 2 61 0 4 1277 840 130 0 0 chr1 90772693 90772831 -106422601 + (GA)n Simple_repeat Simple_repeat 1 138 0 4 1277 1238 267 33 3 chr1 90773557 90773925 -106421507 + MTE2a LTR MaLR 1 379 0 4 1277 234 271 14 14 chr1 90774960 90775048 -106420384 + CT-rich Low_complexity Low_complexity 1 88 0 4 1277 331 317 117 6 chr1 90775234 90775396 -106420036 + Charlie5 DNA MER1_type 2359 2538 -86 4 1277 252 59 0 0 chr1 90776613 90776647 -106418785 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1277 806 261 107 139 chr1 90776717 90777193 -106418239 + MLT1C LTR MaLR 1 461 -6 4 1277 707 306 100 66 chr1 90777649 90778058 -106417374 + Charlie1a DNA MER1_type 257 679 -776 4 1277 812 154 0 8 chr1 90778398 90778529 -106416903 - B3 SINE B2 -86 130 1 4 1277 493 319 192 14 chr1 90778532 90779016 -106416416 + Charlie1a DNA MER1_type 886 1455 0 4 1277 366 237 39 8 chr1 90779018 90779150 -106416282 - MTD LTR MaLR -20 399 256 4 1277 583 310 59 33 chr1 90779207 90779477 -106415955 - MTD LTR MaLR -138 281 5 4 1277 318 293 17 25 chr1 90779489 90779608 -106415824 + L1M5 LINE L1 2705 2822 -3324 4 1277 621 276 9 69 chr1 90779614 90779832 -106415600 - B3A SINE B2 -11 205 1 4 1277 279 305 32 7 chr1 90779865 90780020 -106415412 + L1M5 LINE L1 2851 3009 -3137 4 1277 791 78 0 17 chr1 90780036 90780153 -106415279 + (GGGAGA)n Simple_repeat Simple_repeat 4 118 0 4 1277 330 206 60 30 chr1 90780291 90780391 -106415041 + L1M5 LINE L1 3196 3298 -2848 4 1277 989 260 123 14 chr1 90780444 90780810 -106414622 + L1M5 LINE L1 3448 3853 -2293 4 1277 437 291 84 26 chr1 90780814 90780969 -106414463 + RSINE1 SINE B4 2 165 0 4 1277 691 139 33 7 chr1 90780973 90781125 -106414307 + GA-rich Low_complexity Low_complexity 4 159 0 4 1277 288 0 0 0 chr1 90781151 90781183 -106414249 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1277 524 231 142 8 chr1 90781210 90781359 -106414073 + B3A SINE B2 1 166 -50 4 1277 207 0 0 0 chr1 90781360 90781383 -106414049 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1277 562 163 160 15 chr1 90781728 90781859 -106413573 - B1_Mur4 SINE Alu 0 150 1 4 1277 733 96 66 0 chr1 90781949 90782085 -106413347 + RLTR22_Mur LTR ERVK 1704 1848 0 4 1277 402 213 10 41 chr1 90782085 90782181 -106413251 - MTC LTR MaLR -133 288 196 4 1277 425 87 0 42 chr1 90782181 90782253 -106413179 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 4 1277 21 0 0 0 chr1 90782256 90782277 -106413155 + AT_rich Low_complexity Low_complexity 1 21 0 4 1277 586 150 6 23 chr1 90782327 90782447 -106412985 - B3 SINE B2 -73 120 1 4 1277 516 143 10 10 chr1 90783155 90783254 -106412178 + URR1B DNA MER1_type 127 225 0 4 1277 283 309 96 0 chr1 90783254 90783389 -106412043 + MLT1E1A LTR MaLR 498 645 -35 4 1277 564 15 0 0 chr1 90783439 90783504 -106411928 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1277 1101 199 229 67 chr1 90783545 90784039 -106411393 + RMER4B LTR ERVK 1 574 -11 4 1277 879 166 158 49 chr1 90784177 90784380 -106411052 - URR1B DNA MER1_type 0 225 1 4 1277 282 87 22 0 chr1 90784828 90784874 -106410558 - ORR1D1 LTR MaLR 0 374 328 4 1277 4523 128 63 3 chr1 90785382 90786077 -106409355 + RMER19A LTR ERVK 1 737 0 4 1277 265 391 15 0 chr1 90786097 90786230 -106409202 + L4 LINE RTE 1555 1689 -340 4 1277 399 223 65 37 chr1 90786481 90786588 -106408844 - ID_B1 SINE B4 -1 223 114 4 1277 2628 181 93 87 chr1 90786619 90787073 -106408359 + Lx7 LINE L1 6940 7363 -333 4 1277 212 0 36 0 chr1 90787073 90787101 -106408331 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 4 1277 2628 181 93 87 chr1 90787101 90787310 -106408122 + Lx7 LINE L1 7364 7577 -119 4 1277 342 0 0 0 chr1 90787310 90787348 -106408084 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1277 2628 181 93 87 chr1 90787348 90787434 -106407998 + Lx7 LINE L1 7578 7694 -2 4 1277 902 137 15 0 chr1 90788637 90788768 -106406664 + B1_Mur3 SINE Alu 1 133 -16 4 1277 378 0 0 0 chr1 90789519 90789561 -106405871 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1277 446 70 14 0 chr1 90789726 90789797 -106405635 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 1277 1386 291 103 53 chr1 90789849 90790362 -106405070 - L1_Rod LINE L1 -15 5832 5310 4 1277 342 0 0 0 chr1 90790362 90790400 -106405032 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1277 1386 296 103 53 chr1 90790400 90790947 -106404485 - L1_Rod LINE L1 -545 5335 4753 4 1277 798 198 0 0 chr1 90790952 90791129 -106404303 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1277 285 254 94 46 chr1 90791129 90791281 -106404151 - L1_Rod LINE L1 -1120 4760 4601 4 1277 27 0 0 0 chr1 90791398 90791425 -106404007 + AT_rich Low_complexity Low_complexity 1 27 0 4 1277 267 254 99 0 chr1 90791492 90791563 -106403869 - B4 SINE B4 -15 277 200 5 1277 1135 132 107 5 chr1 90792034 90792239 -106403193 + URR1A DNA MER1_type 1 226 0 5 1277 250 302 115 26 chr1 90792632 90792767 -106402665 + MIRb SINE MIR 17 157 -111 5 1277 270 136 0 0 chr1 90792793 90792837 -106402595 + (ATGGTG)n Simple_repeat Simple_repeat 6 49 0 5 1277 183 80 0 0 chr1 90792871 90792896 -106402536 + (GAA)n Simple_repeat Simple_repeat 3 27 0 5 1277 899 142 11 11 chr1 90792899 90792940 -106402492 + polypurine Low_complexity Low_complexity 1 42 0 5 1277 1179 117 0 0 chr1 90792940 90793120 -106402312 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1277 899 142 11 11 chr1 90793120 90793256 -106402176 + polypurine Low_complexity Low_complexity 43 178 0 5 1277 203 258 32 16 chr1 90793279 90793342 -106402090 + MIR SINE MIR 145 208 -54 5 1277 609 58 0 0 chr1 90793445 90793531 -106401901 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1277 553 271 66 29 chr1 90794054 90794297 -106401135 + MLT1C LTR MaLR 175 426 -41 5 1277 360 0 0 0 chr1 90794395 90794435 -106400997 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1277 266 255 9 28 chr1 90794947 90795057 -106400375 + L1MEe LINE L1 960 1064 -5161 5 1277 375 297 109 62 chr1 90795160 90795607 -106399825 + L1MEe LINE L1 1273 1758 -4391 5 1277 249 33 0 0 chr1 90795971 90796001 -106399431 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1277 902 169 0 0 chr1 90796012 90796148 -106399284 - B1_Mur3 SINE Alu -13 136 1 5 1277 1921 156 75 0 chr1 90796151 90796510 -106398922 - ORR1B1 LTR MaLR -8 386 1 5 1277 503 223 331 20 chr1 90797019 90797170 -106398262 + B3A SINE B2 1 198 0 5 1277 267 342 54 20 chr1 90797661 90797810 -106397622 + L1MC4 LINE L1 7326 7479 -563 5 1277 329 235 45 11 chr1 90797811 90797899 -106397533 + PB1D10 SINE Alu 13 100 -17 5 1277 1136 282 73 5 chr1 90798026 90798407 -106397025 - MTD LTR MaLR 0 419 13 5 1277 192 77 0 0 chr1 90798792 90798818 -106396614 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1277 1000 212 86 27 chr1 90800143 90800412 -106395020 - MTD LTR MaLR -21 398 137 5 1277 351 266 18 44 chr1 90801015 90801065 -106394367 + B4 SINE B4 40 86 -206 5 1277 212 301 14 0 chr1 90801065 90801138 -106394294 + B1F SINE Alu 1 74 -75 5 1277 561 108 11 0 chr1 90801144 90801237 -106394195 - URR1B DNA MER1_type 0 225 132 5 1277 266 217 116 0 chr1 90801341 90801410 -106394022 - RMER12 LTR ERVK -146 1176 1100 5 1277 438 104 0 0 chr1 90801440 90801507 -106393925 - RMER12 LTR ERVK -932 390 324 5 1277 260 209 59 15 chr1 90801507 90801575 -106393857 + RMER19A LTR ERVK 1 71 -666 5 1277 1098 218 49 38 chr1 90801551 90801935 -106393497 + RMER19A LTR ERVK 250 737 0 5 1277 1920 140 3 12 chr1 90801935 90802267 -106393165 - RMER12 LTR ERVK -993 329 1 5 1277 439 129 0 0 chr1 90802268 90802338 -106393094 - URR1B DNA MER1_type -89 136 67 5 1277 322 293 24 0 chr1 90802346 90802428 -106393004 + B4A SINE B4 165 248 -44 5 1277 309 26 0 0 chr1 90802429 90802467 -106392965 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1277 459 0 0 0 chr1 90802467 90802517 -106392915 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1277 1089 118 0 0 chr1 90802535 90802704 -106392728 + (GGAA)n Simple_repeat Simple_repeat 2 170 0 5 1277 492 310 61 33 chr1 90803163 90803483 -106391949 + L2a LINE L2 2859 3192 -234 5 1277 400 273 76 25 chr1 90803550 90803642 -106391790 - RLTR20C LTR ERVK 0 534 436 5 1277 198 0 0 0 chr1 90803642 90803664 -106391768 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1277 400 239 47 12 chr1 90803664 90803767 -106391665 - RLTR20C LTR ERVK -99 435 230 5 1277 243 0 0 0 chr1 90803784 90803811 -106391621 + (TTC)n Simple_repeat Simple_repeat 2 28 0 5 1277 375 192 40 27 chr1 90803831 90803941 -106391491 - RLTR20C LTR ERVK -416 161 2 5 1277 985 246 39 21 chr1 90804778 90805064 -106390368 + B4A SINE B4 1 291 -1 5 1277 207 0 0 0 chr1 90805082 90805105 -106390327 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1277 302 261 24 112 chr1 90805668 90805793 -106389639 - B4A SINE B4 -178 114 1 5 1277 271 305 75 38 chr1 90806794 90806927 -106388505 - MLT1A1 LTR MaLR -3 405 268 5 1277 336 236 0 0 chr1 90807233 90807322 -106388110 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1277 1056 175 161 59 chr1 90807408 90807694 -106387738 + ORR1D2 LTR MaLR 39 353 -17 5 1277 502 326 69 31 chr1 90807700 90808020 -106387412 - ORR1E LTR MaLR -18 341 10 5 1277 2519 297 63 104 chr1 90808018 90809258 -106386174 - MTE-int LTR MaLR -43 1537 349 5 1277 232 333 9 44 chr1 90809340 90809453 -106385979 - MTE2a LTR MaLR -24 355 247 5 1277 1198 229 37 115 chr1 90809962 90810372 -106385060 + MTE2a LTR MaLR 2 379 0 5 1277 2621 140 149 110 chr1 90810742 90811406 -106384026 - RMER6C LTR ERVK 0 690 1 5 1277 450 217 31 6 chr1 90811596 90811758 -106383674 + (TG)n Simple_repeat Simple_repeat 2 167 0 5 1277 22 35 0 0 chr1 90811804 90811833 -106383599 + AT_rich Low_complexity Low_complexity 1 29 0 5 1277 1075 242 49 52 chr1 90812294 90812351 -106383081 - MT2B LTR ERVL 0 601 541 5 1277 524 15 15 0 chr1 90812351 90812416 -106383016 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 5 1277 1075 266 63 48 chr1 90812416 90812867 -106382565 - MT2B LTR ERVL -61 540 3 5 1277 226 158 0 0 chr1 90813803 90813841 -106381591 - MLT1B LTR MaLR -132 258 221 5 1277 219 188 0 0 chr1 90813860 90813908 -106381524 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 5 1277 275 247 194 0 chr1 90814784 90814877 -106380555 + PB1D10 SINE Alu 1 111 -6 5 1277 476 245 149 23 chr1 90815121 90815342 -106380090 + MLT2D LTR ERVL 15 263 -151 5 1277 313 105 35 0 chr1 90815342 90815399 -106380033 - MTD LTR MaLR 0 419 361 5 1277 1951 177 24 11 chr1 90815397 90815769 -106379663 + ORR1C2 LTR MaLR 7 383 -1 5 1277 1124 200 133 48 chr1 90815772 90815972 -106379460 - MTD LTR MaLR -100 319 95 5 1277 3894 137 113 31 chr1 90815972 90816392 -106379040 - RMER6A LTR ERVK 0 756 335 5 1277 838 50 0 16 chr1 90816392 90816514 -106378918 + (TC)n Simple_repeat Simple_repeat 2 121 0 5 1277 3894 137 113 31 chr1 90816514 90816792 -106378640 - RMER6A LTR ERVK -422 334 2 5 1277 1124 200 133 48 chr1 90816792 90816885 -106378547 - MTD LTR MaLR -325 94 1 5 1277 360 0 0 0 chr1 90817454 90817494 -106377938 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1277 279 0 0 0 chr1 90817494 90817524 -106377908 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1277 741 302 110 72 chr1 90818565 90818993 -106376439 - MLT1C LTR MaLR -17 450 7 5 1277 2660 48 58 5 chr1 90819771 90820151 -106375281 - MTB_Mm LTR MaLR 0 407 8 5 1277 252 0 0 0 chr1 90821309 90821337 -106374095 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1277 295 265 27 81 chr1 90821503 90821614 -106373818 + MER20 DNA MER1_type 81 185 -34 5 1277 360 0 0 0 chr1 90821711 90821751 -106373681 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1277 201 175 0 0 chr1 90821751 90821791 -106373641 + (CATA)n Simple_repeat Simple_repeat 4 43 0 5 1277 339 349 91 44 chr1 90821846 90822275 -106373157 - L2a LINE L2 0 3426 2978 5 1277 580 302 29 29 chr1 90822574 90822813 -106372619 + MLT1C LTR MaLR 193 431 -36 5 1277 741 263 5 38 chr1 90823508 90823694 -106371738 - B3A SINE B2 -18 180 1 5 1277 476 221 0 0 chr1 90824339 90824443 -106370989 - PB1D10 SINE Alu -10 107 4 5 1277 862 172 36 54 chr1 90824948 90825114 -106370318 + RSINE1 SINE B4 3 165 0 5 1277 28 48 0 0 chr1 90825239 90825281 -106370151 + AT_rich Low_complexity Low_complexity 1 42 0 5 1277 492 264 16 8 chr1 90825281 90825403 -106370029 - ID_B1 SINE B4 -62 162 40 5 1277 28 0 0 0 chr1 90825619 90825647 -106369785 + AT_rich Low_complexity Low_complexity 1 28 0 5 1277 316 160 0 48 chr1 90825647 90825752 -106369680 + GA-rich Low_complexity Low_complexity 1 100 0 5 1277 266 247 25 25 chr1 90825792 90825871 -106369561 + GA-rich Low_complexity Low_complexity 4 82 0 5 1277 672 308 16 0 chr1 90826448 90826633 -106368799 + Lx8 LINE L1 7133 7320 -153 5 1277 834 126 0 0 chr1 90826633 90826768 -106368664 + (TAGA)n Simple_repeat Simple_repeat 1 135 0 5 1277 498 75 0 0 chr1 90826769 90826836 -106368596 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 5 1277 249 209 0 0 chr1 90826837 90826904 -106368528 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 5 1277 1007 123 0 16 chr1 90826904 90827086 -106368346 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 5 1277 644 273 48 32 chr1 90827185 90827374 -106368058 + B3A SINE B2 5 196 -2 5 1277 35 0 0 0 chr1 90827377 90827412 -106368020 + AT_rich Low_complexity Low_complexity 1 35 0 5 1277 668 281 33 80 chr1 90828161 90828497 -106366935 + L1M5 LINE L1 2789 3108 -3038 5 1277 337 39 39 0 chr1 90828508 90828559 -106366873 + (ATG)n Simple_repeat Simple_repeat 2 54 0 5 1277 447 155 0 0 chr1 90828605 90828689 -106366743 + CT-rich Low_complexity Low_complexity 1 84 0 5 1277 1922 186 46 19 chr1 90830591 90830958 -106364474 - MTE2b LTR MaLR 0 379 3 5 1278 708 284 19 72 chr1 90834273 90834482 -106360950 + B3A SINE B2 1 198 0 5 1278 849 276 52 63 chr1 90834526 90834812 -106360620 + B4A SINE B4 6 288 -4 5 1278 313 185 77 0 chr1 90835531 90835596 -106359836 + MLT1A1 LTR MaLR 291 360 -48 5 1278 722 273 6 11 chr1 90835686 90835860 -106359572 + MTEa LTR MaLR 11 183 -196 5 1278 510 17 0 0 chr1 90835862 90835921 -106359511 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 5 1278 320 321 52 110 chr1 90835946 90836214 -106359218 + B4A SINE B4 3 260 -32 5 1278 1064 79 0 7 chr1 90836214 90836367 -106359065 + (TCTCCC)n Simple_repeat Simple_repeat 1 152 0 5 1278 320 321 52 110 chr1 90836367 90836406 -106359026 + B4A SINE B4 261 292 0 5 1278 649 260 32 27 chr1 90836435 90836621 -106358811 + MTEa LTR MaLR 193 379 0 5 1278 814 259 142 24 chr1 90837092 90837430 -106358002 + MTD LTR MaLR 10 419 0 5 1278 320 167 55 14 chr1 90837554 90837627 -106357805 - MTEa LTR MaLR -14 365 290 5 1278 264 308 50 66 chr1 90837693 90837874 -106357558 - MTEa LTR MaLR -120 239 62 5 1278 245 275 143 27 chr1 90837893 90838005 -106357427 - MLT1A1 LTR MaLR -274 134 10 5 1278 359 297 122 25 chr1 90838171 90838368 -106357064 + MIRb SINE MIR 53 268 0 5 1278 978 9 0 0 chr1 90838548 90838659 -106356773 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 1278 387 0 0 0 chr1 90838887 90838930 -106356502 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1278 547 83 37 9 chr1 90839181 90839290 -106356142 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 5 1278 267 93 0 0 chr1 90839325 90839368 -106356064 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 6 1278 966 154 18 6 chr1 90840559 90840722 -106354710 - RMER1C Other Other -18 1324 1160 6 1278 438 334 115 39 chr1 90841422 90841805 -106353627 + MLT1J LTR MaLR 7 418 -94 6 1278 520 287 138 55 chr1 90842432 90842779 -106352653 + MTE2a LTR MaLR 1 376 -3 6 1278 399 310 89 7 chr1 90843085 90843231 -106352201 + L2a LINE L2 3269 3426 0 6 1278 1855 174 20 25 chr1 90843958 90844311 -106351121 - Lx9 LINE L1 -572 7072 6722 6 1278 1985 281 45 34 chr1 90844312 90844871 -106350561 - MTE2a-int LTR MaLR -133 1447 882 6 1278 686 137 274 0 chr1 90844871 90845024 -106350408 - B2_Mm2 SINE B2 0 195 1 6 1278 1985 281 45 34 chr1 90845024 90845047 -106350385 - MTE2a-int LTR MaLR -699 881 859 6 1278 993 275 132 59 chr1 90845050 90845476 -106349956 - MTE2a-int LTR MaLR -843 415 3 6 1278 559 255 202 54 chr1 90845541 90845744 -106349688 - MTE2a LTR MaLR 0 379 147 6 1278 1100 213 5 0 chr1 90846119 90846321 -106349111 - MTEa LTR MaLR -2 377 175 6 1278 811 279 91 61 chr1 90846496 90846859 -106348573 - MLT1F LTR MaLR -18 530 157 6 1278 239 234 111 155 chr1 90846781 90846988 -106348444 + Tigger10 DNA Tigger 254 451 -1392 6 1278 261 352 49 21 chr1 90846989 90847131 -106348301 + MIRm SINE MIR 131 276 0 6 1278 7834 146 34 15 chr1 90847147 90848455 -106346977 + Lx4B LINE L1 5723 7054 -4 6 1278 1003 226 183 135 chr1 90848693 90849130 -106346302 + MT2B LTR ERVL 6 544 -57 6 1278 241 78 19 19 chr1 90849173 90849190 -106346242 + (TA)n Simple_repeat Simple_repeat 1 17 0 6 1278 402 115 0 0 chr1 90849190 90849251 -106346181 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1278 241 78 19 19 chr1 90849251 90849285 -106346147 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1278 386 169 11 43 chr1 90849324 90849509 -106345923 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 6 1278 302 278 66 22 chr1 90849532 90849668 -106345764 - L1MCa LINE L1 -4530 1978 1837 6 1278 293 149 84 0 chr1 90849686 90849793 -106345639 + (TA)n Simple_repeat Simple_repeat 2 117 0 6 1278 213 39 0 0 chr1 90849795 90849821 -106345611 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1278 277 335 153 56 chr1 90850117 90850405 -106345027 - LTR16C LTR ERVL -87 402 87 6 1278 946 294 56 83 chr1 90850811 90850951 -106344481 + MTE2a LTR MaLR 1 141 -238 6 1278 616 98 20 0 chr1 90850951 90851053 -106344379 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 1278 946 292 52 49 chr1 90851053 90851300 -106344132 + MTE2a LTR MaLR 142 370 0 6 1278 685 170 13 26 chr1 90851918 90852058 -106343374 - B1_Mus2 SINE Alu -2 147 2 6 1278 213 121 0 0 chr1 90852674 90852707 -106342725 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 6 1278 630 253 41 24 chr1 90852707 90852877 -106342555 + B4A SINE B4 82 254 -38 6 1278 594 178 47 0 chr1 90853424 90853531 -106341901 + B1F SINE Alu 26 137 -12 6 1278 1386 185 65 27 chr1 90854268 90854562 -106340870 + MTD LTR MaLR 107 411 -8 6 1278 4418 160 26 1 chr1 90854577 90855296 -106340136 + MERVL_2A-int LTR ERVL 3640 4376 -1385 6 1278 665 230 7 15 chr1 90856077 90856214 -106339218 - B3 SINE B2 -80 136 1 6 1278 231 36 0 0 chr1 90857279 90857307 -106338125 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 6 1278 303 284 10 10 chr1 90857335 90857438 -106337994 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 1278 274 316 50 10 chr1 90858145 90858236 -106337196 + PB1D10 SINE Alu 13 107 -10 6 1278 315 0 0 0 chr1 90858236 90858271 -106337161 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1278 611 301 58 102 chr1 90858918 90859243 -106336189 - B4A SINE B4 -14 278 1 6 1278 453 278 43 9 chr1 90860258 90860374 -106335058 + RSINE1 SINE B4 40 159 -6 6 1278 737 214 71 55 chr1 90860388 90860571 -106334861 + B3A SINE B2 1 186 -12 6 1278 34 55 0 0 chr1 90860571 90860626 -106334806 + AT_rich Low_complexity Low_complexity 1 55 0 6 1278 657 170 120 193 chr1 90861683 90861916 -106333516 - B3 SINE B2 0 216 1 6 1278 236 289 33 22 chr1 90862573 90862665 -106332767 + RLTR22_Mus LTR ERVK 985 1077 -731 6 1278 450 313 63 90 chr1 90863150 90863506 -106331926 - MLT1E2 LTR MaLR -284 343 6 6 1278 288 251 29 6 chr1 90863535 90863707 -106331725 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 1278 655 230 70 26 chr1 90863717 90863873 -106331559 - RSINE1 SINE B4 0 165 3 6 1278 818 164 7 52 chr1 90863912 90863971 -106331461 - MTC LTR MaLR -2 419 368 6 1278 2937 36 0 121 chr1 90863971 90864386 -106331046 + RLTR10B2 LTR ERVK 1 365 0 6 1278 818 199 12 66 chr1 90864386 90864517 -106330915 - MTC LTR MaLR -54 367 192 6 1278 333 47 0 0 chr1 90864642 90864685 -106330747 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1278 1568 220 45 48 chr1 90864725 90865145 -106330287 + RMER19C LTR ERVK 141 559 -52 6 1278 462 214 198 78 chr1 90865143 90865164 -106330268 - B2_Mm2 SINE B2 -8 187 172 6 1278 405 0 0 0 chr1 90865164 90865209 -106330223 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1278 575 214 198 78 chr1 90865209 90865354 -106330078 - B3A SINE B2 -24 171 1 6 1278 360 43 0 0 chr1 90865370 90865416 -106330016 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 6 1278 751 209 15 0 chr1 90865417 90865551 -106329881 - B1_Mur2 SINE Alu -11 138 3 6 1278 300 310 14 0 chr1 90865777 90865848 -106329584 - LTR78 LTR ERV1 -732 572 501 6 1278 964 242 39 5 chr1 90865873 90866081 -106329351 + B3 SINE B2 1 215 -1 6 1278 991 314 97 27 chr1 90866099 90866613 -106328819 - MER74B LTR ERVL -6 616 67 6 1278 487 172 172 0 chr1 90866609 90866702 -106328730 + ID_B1 SINE B4 105 213 -11 6 1278 261 0 0 0 chr1 90867276 90867305 -106328127 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1278 198 0 0 0 chr1 90867305 90867327 -106328105 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1278 285 320 33 71 chr1 90867361 90867455 -106327977 + L1MB5 LINE L1 5854 5938 -236 6 1278 5665 43 1 6 chr1 90867455 90868136 -106327296 + L1Md_F2 LINE L1 5893 6570 -12 6 1278 207 0 0 0 chr1 90868142 90868165 -106327267 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1278 285 320 33 71 chr1 90868165 90868275 -106327157 + L1MB5 LINE L1 5944 6057 -117 6 1278 608 285 0 13 chr1 90869124 90869277 -106326155 + ID_B1 SINE B4 73 223 -1 6 1278 680 216 73 34 chr1 90869296 90869473 -106325959 - MTE2a LTR MaLR 0 379 196 6 1278 393 250 129 0 chr1 90869485 90869601 -106325831 - MTE2a LTR MaLR -243 136 6 6 1278 555 242 3 3 chr1 90869638 90869975 -106325457 + (CA)n Simple_repeat Simple_repeat 1 337 0 6 1278 723 206 0 0 chr1 90869993 90870173 -106325259 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1278 436 244 23 35 chr1 90870952 90871190 -106324242 + (TATG)n Simple_repeat Simple_repeat 1 235 0 6 1278 656 284 70 49 chr1 90871225 90871510 -106323922 - B4A SINE B4 0 292 2 6 1278 1062 202 185 0 chr1 90872092 90872330 -106323102 + MTE2b LTR MaLR 1 282 -97 6 1278 397 331 25 19 chr1 90872329 90872489 -106322943 + B4A SINE B4 113 273 -19 6 1278 481 216 1 1 chr1 90872482 90872572 -106322860 + MTE2b LTR MaLR 289 374 0 6 1278 390 274 0 59 chr1 90873584 90873682 -106321750 + B4A SINE B4 1 92 -200 6 1278 1306 234 102 36 chr1 90873682 90873989 -106321443 - MTD LTR MaLR 0 419 90 6 1278 3089 97 21 13 chr1 90873989 90874460 -106320972 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1278 1306 234 102 36 chr1 90874460 90874485 -106320947 - MTD LTR MaLR -330 89 65 6 1278 2310 138 64 8 chr1 90874560 90874933 -106320499 - ORR1B1 LTR MaLR 0 394 1 6 1278 346 246 0 0 chr1 90874971 90875032 -106320400 + B4 SINE B4 104 164 -128 6 1278 320 0 25 0 chr1 90875255 90875295 -106320137 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 6 1278 766 274 1 38 chr1 90875969 90876192 -106319240 + B3A SINE B2 1 209 -7 6 1278 2641 247 68 12 chr1 90876252 90877029 -106318403 - RCHARR1 DNA MER1_type -36 938 118 6 1278 336 292 71 44 chr1 90877042 90877193 -106318239 - MLT1A1 LTR MaLR -12 396 202 6 1278 511 263 113 0 chr1 90877668 90877801 -106317631 + RSINE1 SINE B4 5 152 -13 6 1278 1286 253 136 0 chr1 90879408 90879732 -106315700 - MTE2b LTR MaLR -9 370 3 6 1278 257 350 93 25 chr1 90880621 90880782 -106314650 + LTR16B2 LTR ERVL 55 226 -236 6 1278 308 330 67 17 chr1 90881056 90881176 -106314256 - MIR SINE MIR -93 169 44 6 1278 261 0 0 0 chr1 90881888 90881917 -106313515 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1278 929 207 6 29 chr1 90881979 90882153 -106313279 - B3 SINE B2 -8 208 39 6 1278 1256 59 6 12 chr1 90882153 90882325 -106313107 + ORR1A2 LTR MaLR 157 327 0 6 1278 277 75 0 0 chr1 90882325 90882365 -106313067 - B3A SINE B2 -156 42 3 6 1278 1460 269 66 52 chr1 90882448 90882965 -106312467 - RLTR11A2 LTR ERVK -3 524 1 6 1278 324 0 0 0 chr1 90883865 90883901 -106311531 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1278 234 0 0 0 chr1 90883901 90883926 -106311506 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1278 1224 260 7 14 chr1 90883977 90884266 -106311166 - B4 SINE B4 -4 288 2 6 1278 2170 180 16 13 chr1 90885370 90885443 -106309989 + ORR1C2 LTR MaLR 1 73 -311 6 1278 778 158 106 45 chr1 90885443 90885622 -106309810 - B2_Mm2 SINE B2 -4 191 2 6 1278 2170 180 16 13 chr1 90885622 90885931 -106309501 + ORR1C2 LTR MaLR 74 383 -1 6 1278 259 250 57 179 chr1 90887000 90887263 -106308169 - RLTR15 LTR ERVK -128 231 1 6 1278 963 223 104 7 chr1 90887263 90887568 -106307864 - ORR1E LTR MaLR -7 372 3 6 1278 462 18 0 0 chr1 90888845 90888900 -106306532 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1278 626 285 46 0 chr1 90888991 90889121 -106306311 + RSINE1 SINE B4 8 143 -22 6 1278 213 350 87 62 chr1 90889653 90889848 -106305584 + B4 SINE B4 34 233 -59 6 1278 246 288 27 27 chr1 90890111 90890186 -106305246 + MTC LTR MaLR 1 75 -346 6 1278 579 29 0 0 chr1 90890325 90890394 -106305038 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 1278 513 195 193 9 chr1 90890396 90890510 -106304922 - B1F SINE Alu -14 135 1 6 1278 543 283 48 7 chr1 90890554 90890700 -106304732 - RSINE1 SINE B4 0 165 14 6 1278 204 179 0 0 chr1 90890707 90890746 -106304686 + (CG)n Simple_repeat Simple_repeat 1 39 0 6 1278 273 294 35 12 chr1 90890917 90891003 -106304429 - RSINE1 SINE B4 0 165 78 7 1278 626 134 23 8 chr1 90891018 90891146 -106304286 + CT-rich Low_complexity Low_complexity 1 130 0 7 1278 235 279 55 55 chr1 90892061 90892171 -106303261 + MTC-int LTR MaLR 967 1076 -182 7 1278 276 200 74 50 chr1 90892413 90892493 -106302939 + B4 SINE B4 6 90 -202 7 1278 338 383 34 15 chr1 90893282 90893486 -106301946 - MLT1H LTR MaLR -284 265 58 7 1278 898 287 51 11 chr1 90893588 90893863 -106301569 + B4A SINE B4 3 288 -4 7 1278 249 33 0 0 chr1 90893921 90893951 -106301481 + (CATA)n Simple_repeat Simple_repeat 2 31 0 7 1278 258 193 53 18 chr1 90893979 90894148 -106301284 + (CA)n Simple_repeat Simple_repeat 2 176 0 7 1278 267 277 109 59 chr1 90894178 90894215 -106301217 - MLT1A1 LTR MaLR -28 380 340 7 1278 1528 62 5 5 chr1 90894215 90894408 -106301024 + B2_Mm2 SINE B2 1 193 -2 7 1278 267 277 109 59 chr1 90894408 90894489 -106300943 - MLT1A1 LTR MaLR -69 339 256 7 1278 949 255 28 12 chr1 90894739 90894989 -106300443 + MER46C DNA MER2_type 70 323 -15 7 1278 618 320 181 76 chr1 90895366 90895775 -106299657 + MLT1F2 LTR MaLR 68 547 -32 7 1278 827 283 36 14 chr1 90895836 90896112 -106299320 - B4 SINE B4 -10 282 1 7 1278 191 36 36 0 chr1 90896151 90896179 -106299253 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1278 868 261 62 163 chr1 90896701 90897048 -106298384 + MTE2a LTR MaLR 5 312 -67 7 1278 802 268 14 40 chr1 90897048 90897270 -106298162 - B3 SINE B2 0 216 1 7 1278 868 261 62 163 chr1 90897270 90897339 -106298093 + MTE2a LTR MaLR 313 379 0 7 1278 572 225 11 4 chr1 90897350 90897618 -106297814 + (CA)n Simple_repeat Simple_repeat 1 270 0 7 1278 1815 79 17 0 chr1 90897683 90897923 -106297509 - ORR1A1 LTR MaLR 0 346 103 7 1278 654 138 246 30 chr1 90898662 90898796 -106296636 + URR1B DNA MER1_type 18 180 -45 7 1278 235 287 47 47 chr1 90898951 90899057 -106296375 + LTR88b LTR Gypsy? 49 154 -683 7 1278 854 281 100 48 chr1 90899870 90900287 -106295145 + MTE2a LTR MaLR 1 404 -15 7 1278 212 0 36 0 chr1 90900357 90900385 -106295047 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1278 316 304 15 46 chr1 90901079 90901210 -106294222 - MLT1D LTR MaLR -48 419 293 7 1278 2302 107 3 3 chr1 90901221 90901540 -106293892 - ORR1A2 LTR MaLR -8 319 1 7 1278 456 272 27 80 chr1 90901617 90901805 -106293627 - MLT1D LTR MaLR -301 204 27 7 1278 1902 181 48 33 chr1 90901966 90902365 -106293067 - MTD LTR MaLR -14 405 1 7 1278 546 268 14 42 chr1 90903048 90903192 -106292240 + ID_B1 SINE B4 81 220 -4 7 1278 537 105 147 0 chr1 90903243 90903338 -106292094 + B2_Mm2 SINE B2 82 190 -5 7 1278 1198 117 32 5 chr1 90903356 90903545 -106291887 - B2_Mm2 SINE B2 0 195 2 7 1278 2784 145 0 5 chr1 90903654 90904083 -106291349 - RLTR20C LTR ERVK -107 427 1 7 1278 1007 272 98 36 chr1 90904261 90904680 -106290752 + MER82 DNA MER2_type 196 640 -13 7 1278 250 320 13 13 chr1 90904727 90904803 -106290629 - MLT1H1 LTR MaLR -255 300 225 7 1278 378 290 217 79 chr1 90904956 90905093 -106290339 + B4A SINE B4 5 169 -123 7 1278 270 0 0 0 chr1 90905093 90905123 -106290309 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1278 378 290 217 79 chr1 90905123 90905225 -106290207 + B4A SINE B4 170 276 -16 7 1278 399 89 0 0 chr1 90905225 90905281 -106290151 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1278 22 0 0 0 chr1 90905389 90905411 -106290021 + AT_rich Low_complexity Low_complexity 1 22 0 7 1278 1174 44 0 0 chr1 90905418 90905554 -106289878 + B1_Mus1 SINE Alu 1 136 -12 7 1278 243 0 0 0 chr1 90905557 90905584 -106289848 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1278 2130 121 2 103 chr1 90905594 90905990 -106289442 - ORR1C1 LTR MaLR -22 356 1 7 1278 439 259 9 9 chr1 90907051 90907164 -106288268 + B3A SINE B2 1 113 -85 7 1278 225 0 0 0 chr1 90907173 90907198 -106288234 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1278 1283 187 203 109 chr1 90908018 90908518 -106286914 - RMER4B LTR ERVK -13 572 18 7 1278 1145 52 0 0 chr1 90908518 90908652 -106286780 + B1_Mus1 SINE Alu 2 135 -13 7 1278 330 26 0 0 chr1 90908655 90908694 -106286738 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1278 1283 187 203 109 chr1 90908694 90908712 -106286720 - RMER4B LTR ERVK -568 17 1 7 1278 417 224 23 23 chr1 90908712 90908799 -106286633 + B4A SINE B4 185 271 -21 7 1278 489 34 0 0 chr1 90908800 90908859 -106286573 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1278 222 292 117 62 chr1 90908945 90909073 -106286359 + L4 LINE RTE 268 402 -1627 7 1278 381 290 25 88 chr1 90910202 90910361 -106285071 - B1F1 SINE Alu 0 149 1 7 1278 389 256 67 0 chr1 90910362 90910452 -106284980 - MIRb SINE MIR -112 156 61 7 1278 452 273 156 44 chr1 90910900 90911080 -106284352 - RMER15 LTR ERVL 0 575 376 7 1278 343 209 26 14 chr1 90912477 90912561 -106282871 - MTD LTR MaLR -11 408 274 7 1278 1243 248 72 84 chr1 90913436 90913782 -106281650 - L1MA8 LINE L1 -5 6286 5952 7 1278 288 77 0 0 chr1 90913782 90913821 -106281611 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1278 1243 248 72 84 chr1 90913821 90914069 -106281363 - L1MA8 LINE L1 -340 5951 5699 7 1278 480 35 0 0 chr1 90914070 90914128 -106281304 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1278 255 31 0 0 chr1 90914130 90914162 -106281270 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1278 1194 242 122 43 chr1 90914339 90914684 -106280748 + MTD LTR MaLR 1 372 -47 7 1278 1045 65 169 0 chr1 90915004 90915158 -106280274 - B2_Mm2 SINE B2 -14 181 2 7 1278 1002 120 25 6 chr1 90916063 90916243 -106279189 - B3 SINE B2 -3 192 1 7 1278 189 322 203 14 chr1 90916332 90916480 -106278952 - MIR SINE MIR -3 259 84 7 1278 519 17 0 0 chr1 90917274 90917334 -106278098 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1278 230 209 183 43 chr1 90917844 90917959 -106277473 - MER45B DNA Tip100 -76 964 834 7 1278 333 0 0 0 chr1 90918355 90918392 -106277040 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1278 780 291 50 12 chr1 90918477 90918848 -106276584 - L1MA4A LINE L1 -1039 5969 5599 7 1278 233 288 0 15 chr1 90918887 90918954 -106276478 - MER45B DNA Tip100 -631 409 344 7 1278 24 32 0 0 chr1 90919251 90919282 -106276150 + AT_rich Low_complexity Low_complexity 1 31 0 7 1278 225 313 76 76 chr1 90919443 90919654 -106275778 + MLT1A LTR MaLR 4 214 -176 7 1278 243 225 39 90 chr1 90919764 90919842 -106275590 + MLT1A LTR MaLR 254 327 -47 7 1278 934 61 112 22 chr1 90919936 90920056 -106275376 + B1_Mus2 SINE Alu 2 136 -11 7 1278 297 0 0 0 chr1 90920056 90920089 -106275343 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1278 934 61 112 22 chr1 90920089 90920102 -106275330 + B1_Mus2 SINE Alu 137 147 0 7 1278 263 188 83 48 chr1 90920376 90920460 -106274972 - Lx9 LINE L1 -174 7470 7384 7 1278 715 174 94 0 chr1 90920585 90920734 -106274698 - B3A SINE B2 -35 163 1 7 1278 323 311 0 0 chr1 90920745 90920848 -106274584 - L1MA5 LINE L1 -23 6277 6175 7 1278 341 248 176 22 chr1 90921723 90921762 -106273670 + ID_B1 SINE B4 41 100 -124 7 1278 257 277 69 103 chr1 90921762 90921907 -106273525 + B1F1 SINE Alu 1 140 -9 7 1278 785 277 56 35 chr1 90922156 90922440 -106272992 + B4A SINE B4 1 290 -2 7 1278 570 228 7 80 chr1 90923143 90923281 -106272151 + B1_Mus1 SINE Alu 19 146 -2 7 1278 950 142 92 6 chr1 90923388 90923551 -106271881 + RLTR15 LTR ERVK 179 355 -4 7 1278 349 315 63 68 chr1 90923562 90923753 -106271679 - ORR1E LTR MaLR -204 190 1 7 1278 1091 234 77 48 chr1 90924053 90924363 -106271069 + ORR1D1 LTR MaLR 1 319 -55 7 1278 1309 78 0 94 chr1 90924362 90924392 -106271040 - B2_Mm2 SINE B2 -1 194 172 7 1278 1247 47 0 0 chr1 90924392 90924540 -106270892 + B1_Mus1 SINE Alu 1 148 0 7 1278 1309 78 0 94 chr1 90924540 90924722 -106270710 - B2_Mm2 SINE B2 -24 171 2 7 1278 345 214 0 79 chr1 90924722 90924798 -106270634 + ORR1D1 LTR MaLR 352 421 0 7 1278 976 299 58 32 chr1 90924821 90925166 -106270266 + MLT1A0 LTR MaLR 12 365 0 7 1278 266 196 0 0 chr1 90925287 90925338 -106270094 + RMER15 LTR ERVL 6 56 -519 7 1278 1495 205 177 47 chr1 90925374 90925825 -106269607 + RMER15 LTR ERVL 22 531 -44 7 1278 486 312 144 10 chr1 90926994 90927188 -106268244 - MLT1B LTR MaLR -17 373 154 7 1278 2324 74 0 133 chr1 90927190 90927565 -106267867 + ORR1A2 LTR MaLR 3 327 0 7 1278 505 303 147 29 chr1 90927638 90927698 -106267734 - B4A SINE B4 -2 290 231 7 1278 201 121 0 0 chr1 90927698 90927731 -106267701 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 7 1278 505 303 147 29 chr1 90927731 90927874 -106267558 - B4A SINE B4 -62 230 64 7 1278 1956 202 36 39 chr1 90928405 90928821 -106266611 - MTD LTR MaLR -2 417 3 7 1278 331 271 0 0 chr1 90928913 90928983 -106266449 + MTE2b LTR MaLR 4 73 -306 7 1278 342 171 0 41 chr1 90929037 90929110 -106266322 - B1F SINE Alu 0 149 80 7 1278 478 189 22 0 chr1 90929104 90929194 -106266238 - ID_B1 SINE B4 -131 93 2 7 1278 284 330 0 39 chr1 90930213 90930317 -106265115 + B4A SINE B4 192 291 -1 7 1278 238 349 203 27 chr1 90930657 90931031 -106264401 - Zaphod DNA Tip100 -62 3969 3530 7 1278 232 221 65 113 chr1 90931112 90931280 -106264152 - Zaphod DNA Tip100 -3080 951 792 7 1278 278 208 208 0 chr1 90931275 90931347 -106264085 + PB1D7 SINE Alu 28 114 -6 7 1278 233 301 142 66 chr1 90931375 90931755 -106263677 - Zaphod DNA Tip100 -3226 805 397 7 1278 596 305 146 26 chr1 90931760 90932150 -106263282 - Zaphod DNA Tip100 -3411 620 184 7 1278 376 237 16 85 chr1 90932237 90932366 -106263066 - PB1D7 SINE Alu 0 120 1 7 1278 180 0 0 0 chr1 90932674 90932694 -106262738 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1278 813 291 73 115 chr1 90933535 90933919 -106261513 + MTEa LTR MaLR 6 373 -6 7 1278 372 202 218 34 chr1 90935211 90935352 -106260080 + MTEa LTR MaLR 1 165 -214 7 1278 1030 256 138 16 chr1 90935354 90935672 -106259760 + MTEb LTR MaLR 13 369 -10 7 1278 1073 64 7 34 chr1 90935688 90935834 -106259598 + B1_Mm SINE Alu 5 146 -1 7 1278 405 321 68 42 chr1 90935881 90936073 -106259359 + MT2A LTR ERVL 191 387 -146 7 1278 219 139 0 0 chr1 90937018 90937054 -106258378 + (GAA)n Simple_repeat Simple_repeat 1 36 0 7 1278 642 85 60 12 chr1 90937068 90937234 -106258198 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 8 1278 463 278 17 25 chr1 90937437 90937555 -106257877 + RSINE1 SINE B4 16 132 -33 8 1278 234 271 143 0 chr1 90938576 90938588 -106256844 + ID4_ SINE ID 1 47 -36 8 1278 234 250 135 0 chr1 90938588 90938640 -106256792 + tRNA-Ala-GCG tRNA tRNA 8 66 -9 8 1278 411 321 43 84 chr1 90939132 90939479 -106255953 + L1ME3 LINE L1 5566 5898 -264 8 1278 313 229 0 0 chr1 90939498 90939559 -106255873 + ID4_ SINE ID 3 63 -20 8 1278 1159 244 30 48 chr1 90939552 90939884 -106255548 + ORR1D2 LTR MaLR 7 332 -38 8 1278 372 207 112 32 chr1 90940489 90940615 -106254817 + L1ME3 LINE L1 6010 6149 -295 8 1278 573 259 28 28 chr1 90940628 90940771 -106254661 + RSINE1 SINE B4 6 148 -17 8 1278 404 262 24 50 chr1 90940801 90940995 -106254437 + B3 SINE B2 2 193 -5 8 1278 1113 90 14 0 chr1 90941558 90941703 -106253729 + B1_Mus1 SINE Alu 2 148 0 8 1278 288 133 0 0 chr1 90941703 90941763 -106253669 + (A)n Simple_repeat Simple_repeat 1 60 0 8 1278 1075 38 32 0 chr1 90941820 90941977 -106253455 + (TAGA)n Simple_repeat Simple_repeat 3 164 0 8 1278 226 209 243 19 chr1 90942952 90943059 -106252373 + RMER15 LTR ERVL 346 476 -99 8 1278 1032 246 87 53 chr1 90943241 90943353 -106252079 - ORR1D2 LTR MaLR -2 368 239 8 1278 1450 83 16 5 chr1 90943353 90943546 -106251886 + B2_Mm2 SINE B2 1 195 0 8 1278 1082 252 87 53 chr1 90943546 90943789 -106251643 - ORR1D2 LTR MaLR -130 240 1 8 1278 948 117 0 0 chr1 90944369 90944514 -106250918 + (TA)n Simple_repeat Simple_repeat 1 145 0 8 1278 288 0 0 0 chr1 90944514 90944546 -106250886 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1278 320 349 114 0 chr1 90944749 90944898 -106250534 - MLT1N2 LTR MaLR -3 559 394 8 1278 450 225 106 30 chr1 90945327 90945471 -106249961 - MTD LTR MaLR 0 419 207 8 1278 27 0 0 0 chr1 90947160 90947187 -106248245 + AT_rich Low_complexity Low_complexity 1 27 0 8 1278 1350 25 0 0 chr1 90947987 90948144 -106247288 + B2_Mm1a SINE B2 2 158 -35 8 1278 470 67 13 0 chr1 90948146 90948221 -106247211 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 8 1278 2495 211 51 6 chr1 90948466 90948976 -106246456 + MT2A LTR ERVL 1 533 0 8 1278 1262 185 14 0 chr1 90949183 90949405 -106246027 - URR1B DNA MER1_type 0 225 1 8 1278 281 305 13 90 chr1 90950100 90950116 -106245316 + B4A SINE B4 77 219 -73 8 1278 843 194 0 0 chr1 90950116 90950255 -106245177 + B1_Mur4 SINE Alu 4 142 -8 8 1278 369 0 0 0 chr1 90950657 90950698 -106244734 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1278 393 180 0 0 chr1 90951657 90951746 -106243686 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1278 570 219 31 15 chr1 90951765 90951895 -106243537 - MTEa LTR MaLR -192 187 56 8 1278 548 170 43 0 chr1 90952265 90952359 -106243073 + B1_Mur2 SINE Alu 45 142 -7 8 1278 2487 120 220 21 chr1 90952450 90952927 -106242505 - RMER15 LTR ERVL 0 575 4 8 1278 3347 122 27 19 chr1 90953051 90953571 -106241861 - RLTR28 LTR ERVL 0 524 1 8 1278 266 324 57 29 chr1 90953753 90953858 -106241574 + PB1D10 SINE Alu 9 116 -1 8 1278 327 49 0 0 chr1 90953864 90953905 -106241527 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1278 294 291 56 81 chr1 90954220 90954381 -106241051 + RMER15 LTR ERVL 1 157 -418 8 1278 455 256 169 19 chr1 90954391 90954598 -106240834 + RMER15 LTR ERVL 286 523 -52 8 1278 789 271 5 27 chr1 90954642 90954828 -106240604 + B3A SINE B2 1 182 -16 8 1278 181 182 0 35 chr1 90955109 90955166 -106240266 + CT-rich Low_complexity Low_complexity 2 56 0 8 1278 243 232 56 108 chr1 90955211 90955424 -106240008 + RMER17A2 LTR ERVK 219 420 -486 8 1278 535 211 131 50 chr1 90955573 90955733 -106239699 - MTE2a LTR MaLR -2 377 205 8 1278 1090 82 0 0 chr1 90955735 90955870 -106239562 + B1_Mus1 SINE Alu 2 136 -12 8 1278 480 35 0 0 chr1 90955870 90955928 -106239504 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 8 1278 818 150 18 6 chr1 90955929 90956097 -106239335 + GA-rich Low_complexity Low_complexity 1 170 0 8 1278 514 270 36 36 chr1 90956097 90956262 -106239170 - MTE2a LTR MaLR -163 216 52 8 1278 520 226 0 0 chr1 90956258 90956351 -106239081 - MTE2a LTR MaLR -283 96 4 8 1278 1561 236 90 17 chr1 90956407 90956928 -106238504 - L1MA7 LINE L1 -235 6056 5498 8 1278 216 0 0 0 chr1 90956928 90956952 -106238480 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1278 226 294 0 128 chr1 90956952 90957030 -106238402 - ID4_ SINE ID -11 72 5 8 1278 488 230 103 7 chr1 90957073 90957209 -106238223 - B1F SINE Alu 0 149 1 8 1278 712 238 35 86 chr1 90957234 90957432 -106238000 - B3A SINE B2 -3 195 8 8 1278 635 223 60 26 chr1 90957441 90957677 -106237755 - L1MA7 LINE L1 -811 5480 5238 8 1278 708 155 53 60 chr1 90957732 90957883 -106237549 + RMER15 LTR ERVL 27 176 -399 8 1278 249 236 92 133 chr1 90957955 90958052 -106237380 - L1MA7 LINE L1 -2735 3408 3298 8 1278 2084 195 125 76 chr1 90958052 90958634 -106236798 + RMER19C LTR ERVK 1 611 0 8 1278 249 236 92 133 chr1 90958634 90958756 -106236676 - L1MA7 LINE L1 -2846 3297 3214 8 1278 1295 27 0 0 chr1 90958756 90958903 -106236529 - B1_Mm SINE Alu 0 147 1 8 1278 249 236 92 133 chr1 90958903 90959029 -106236403 - L1MA7 LINE L1 -2930 3213 3077 8 1278 684 36 0 0 chr1 90959357 90959440 -106235992 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1278 282 254 0 40 chr1 90960260 90960334 -106235098 + tRNA-Ala-GCY_ tRNA tRNA 3 73 -2 8 1278 895 154 27 20 chr1 90960748 90960894 -106234538 - B1_Mus2 SINE Alu 0 147 1 8 1278 375 23 0 0 chr1 90960931 90960975 -106234457 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 8 1278 375 267 43 12 chr1 90960983 90961082 -106234350 - ID_B1 SINE B4 -175 117 2 8 1278 654 146 0 0 chr1 90961110 90961220 -106234212 + (TA)n Simple_repeat Simple_repeat 1 110 0 8 1278 1097 99 49 6 chr1 90961220 90961382 -106234050 - B2_Mm2 SINE B2 -26 169 1 8 1278 462 278 0 34 chr1 90961385 90961504 -106233928 - PB1D10 SINE Alu -2 115 1 8 1278 303 281 0 0 chr1 90961837 90961901 -106233531 - B3A SINE B2 -134 64 1 8 1278 397 295 94 70 chr1 90962136 90962380 -106233052 - Lx8 LINE L1 -24 7449 7200 8 1278 647 334 48 39 chr1 90962777 90963132 -106232300 - ORR1E LTR MaLR -1 358 1 8 1278 302 24 48 0 chr1 90963482 90963524 -106231908 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 8 1278 1183 69 0 0 chr1 90963524 90963669 -106231763 - B1_Mm SINE Alu -2 145 1 8 1278 222 211 57 19 chr1 90963913 90963966 -106231466 - PB1D7 SINE Alu 0 120 66 8 159 434 333 62 0 chr1 90963922 90964051 -106231381 - ID_B1 SINE B4 -8 216 80 8 1279 362 297 26 43 chr1 90964806 90964922 -106230510 - PB1D10 SINE Alu -2 115 2 8 1279 934 215 80 0 chr1 90964943 90965143 -106230289 - B3 SINE B2 0 216 1 8 1279 847 226 9 67 chr1 90965145 90965368 -106230064 - ID_B1 SINE B4 -13 211 2 8 1279 225 194 123 14 chr1 90965446 90965519 -106229913 - MIRb SINE MIR -8 260 180 8 1279 198 0 0 0 chr1 90965800 90965822 -106229610 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 8 1279 269 272 16 71 chr1 90966826 90967008 -106228424 + C-rich Low_complexity Low_complexity 6 177 0 8 1279 22 80 0 0 chr1 90967343 90967393 -106228039 + GC_rich Low_complexity Low_complexity 1 50 0 8 1279 855 29 0 0 chr1 90969516 90969618 -106225814 + (TG)n Simple_repeat Simple_repeat 2 103 0 8 1279 2705 143 177 8 chr1 90970452 90970944 -106224488 + RMER15 LTR ERVL 1 575 0 8 1279 471 194 11 11 chr1 90971797 90971891 -106223541 - MER63B DNA AcHobo -34 402 309 8 1279 864 89 19 0 chr1 90972188 90972346 -106223086 + (TG)n Simple_repeat Simple_repeat 1 161 0 8 1279 830 224 80 6 chr1 90972400 90972575 -106222857 - B3 SINE B2 -27 189 2 8 1279 807 228 156 10 chr1 90972578 90972777 -106222655 - B4 SINE B4 -63 229 2 8 1279 261 0 0 0 chr1 90972838 90972867 -106222565 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1279 457 264 236 34 chr1 90974202 90974314 -106221118 - B4A SINE B4 -2 290 134 8 1279 222 62 0 0 chr1 90974314 90974346 -106221086 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 8 1279 457 264 236 34 chr1 90974346 90974441 -106220991 - B4A SINE B4 -159 133 41 8 1279 474 75 0 0 chr1 90975332 90975399 -106220033 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1279 204 40 0 0 chr1 90976126 90976151 -106219281 + (GGA)n Simple_repeat Simple_repeat 1 25 0 8 1279 532 224 0 164 chr1 90976742 90976913 -106218519 - B1_Mur2 SINE Alu 0 149 7 8 1279 192 246 179 26 chr1 90978044 90978161 -106217271 - L2 LINE L2 -468 2951 2817 8 1279 613 271 98 11 chr1 90981131 90981314 -106214118 - MTD LTR MaLR -216 203 5 8 1279 432 265 99 33 chr1 90982018 90982139 -106213293 - ID_B1 SINE B4 -2 222 94 8 1279 239 0 0 31 chr1 90983005 90983037 -106212395 + (GGGTG)n Simple_repeat Simple_repeat 3 33 0 8 1279 642 241 146 49 chr1 90984272 90984477 -106210955 + MTE2a LTR MaLR 58 282 -97 8 1279 229 246 0 16 chr1 90984497 90984559 -106210873 + (TTA)n Simple_repeat Simple_repeat 3 63 0 8 1279 349 353 153 0 chr1 90984946 90985181 -106210251 + L1MC3 LINE L1 7226 7496 -289 8 1279 180 179 0 0 chr1 90985739 90985778 -106209654 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1279 206 233 0 23 chr1 90985778 90985822 -106209610 + polypurine Low_complexity Low_complexity 2 44 0 8 1279 750 253 132 0 chr1 90987776 90987966 -106207466 - B3 SINE B2 0 216 2 8 1279 569 193 0 27 chr1 90988152 90988264 -106207168 + ID_B1 SINE B4 115 223 -1 8 1279 232 279 15 165 chr1 90988422 90988555 -106206877 + MLT1F2 LTR MaLR 395 507 -53 8 1279 189 0 0 0 chr1 90989297 90989318 -106206114 + (CG)n Simple_repeat Simple_repeat 2 22 0 8 1279 252 0 0 0 chr1 90989318 90989345 -106206087 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1279 241 263 135 20 chr1 90990023 90990139 -106205293 + MLT1D LTR MaLR 11 145 -360 8 1279 257 365 34 34 chr1 90990530 90990706 -106204726 + MLT1D LTR MaLR 275 450 -55 8 1279 387 0 0 0 chr1 90991029 90991072 -106204360 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1279 1350 193 272 28 chr1 90991674 90992101 -106203331 - MT2A LTR ERVL 0 533 3 9 1279 774 245 78 45 chr1 90992681 90992925 -106202507 + B4 SINE B4 41 292 0 9 1279 2051 96 31 16 chr1 90993339 90993656 -106201776 - RLTRETN_Mm LTR ERVK 0 322 1 9 1279 24026 38 11 13 chr1 90993656 90998247 -106197185 - MMETn-int LTR ERVK 0 4844 180 9 1279 2861 45 0 0 chr1 90998216 90998572 -106196860 - ETnERV-int LTR ERVK -2958 356 1 9 1279 2087 87 31 16 chr1 90998572 90998889 -106196543 - RLTRETN_Mm LTR ERVK 0 322 1 9 1279 402 21 0 0 chr1 91000130 91000177 -106195255 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1279 321 253 43 32 chr1 91000392 91000486 -106194946 + ID_B1 SINE B4 124 218 -6 2 1279 384 346 136 10 chr1 91001194 91001489 -106193943 - MER58B DNA MER1_type 0 341 10 3 1279 266 338 97 82 chr1 91001826 91002155 -106193277 - MLT1B LTR MaLR -2 388 55 4 1279 474 70 0 0 chr1 91006178 91006249 -106189183 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1279 199 202 56 58 chr1 91006791 91006888 -106188544 - MIRb SINE MIR -117 151 54 6 1279 281 365 23 31 chr1 91007213 91007343 -106188089 + ORR1E LTR MaLR 4 132 -227 7 1279 496 291 0 88 chr1 91008227 91008408 -106187024 - B3A SINE B2 0 216 52 8 1279 890 259 22 31 chr1 91008540 91008763 -106186669 - ID_B1 SINE B4 -2 222 2 9 1279 446 198 23 114 chr1 91008825 91008956 -106186476 + PB1D9 SINE Alu 1 119 -1 1 1279 658 84 19 0 chr1 91009913 91010020 -106185412 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1279 511 216 75 60 chr1 91010024 91010157 -106185275 - B3 SINE B2 -70 146 12 1 1279 731 176 56 56 chr1 91010622 91010766 -106184666 - B1_Mus1 SINE Alu 0 148 5 1 1279 361 319 95 21 chr1 91012685 91012874 -106182558 - L1MB5 LINE L1 -264 5910 5708 1 1279 276 30 0 0 chr1 91014295 91014328 -106181104 + (GGGGA)n Simple_repeat Simple_repeat 3 35 0 1 1279 264 91 0 0 chr1 91015294 91015338 -106180094 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1279 270 282 13 13 chr1 91015764 91015843 -106179589 + ID4_ SINE ID 4 82 -1 1 1279 676 315 70 48 chr1 91016113 91016510 -106178922 - MLT1C LTR MaLR -58 409 4 1 1279 240 35 0 0 chr1 91017410 91017439 -106177993 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1279 232 309 71 20 chr1 91018675 91018774 -106176658 - MLT1B LTR MaLR -44 423 320 2 1279 256 243 111 51 chr1 91018834 91018951 -106176481 - MLT1B LTR MaLR -166 224 101 2 1279 287 316 29 50 chr1 91019881 91020021 -106175411 + MER20 DNA MER1_type 80 216 -3 2 1279 543 256 74 68 chr1 91021623 91021799 -106173633 - B3 SINE B2 0 216 40 2 1279 697 152 20 55 chr1 91021813 91021959 -106173473 + URR1A DNA MER1_type 50 190 -36 2 1279 538 215 85 43 chr1 91022079 91022220 -106173212 - B1F SINE Alu -1 148 2 2 1279 1243 138 107 10 chr1 91022413 91022618 -106172814 - URR1A DNA MER1_type 0 226 2 2 1279 219 167 83 0 chr1 91022796 91022844 -106172588 - PB1D10 SINE Alu -2 115 64 2 1279 251 157 19 38 chr1 91022801 91022854 -106172578 - ID_B1 SINE B4 -7 217 166 2 1279 326 329 94 18 chr1 91022942 91023112 -106172320 + MER58A DNA MER1_type 26 208 -16 2 1279 23 0 0 0 chr1 91023243 91023266 -106172166 + AT_rich Low_complexity Low_complexity 1 23 0 2 1279 685 213 43 37 chr1 91023825 91023965 -106171467 + B3 SINE B2 25 167 -49 3 1279 390 120 0 0 chr1 91023965 91024040 -106171392 + (CATA)n Simple_repeat Simple_repeat 4 78 0 3 1279 685 194 48 144 chr1 91024040 91024086 -106171346 + B3 SINE B2 153 193 -2 3 1279 1147 68 0 14 chr1 91024481 91024618 -106170814 + B1_Mus1 SINE Alu 3 139 -9 3 1279 396 0 0 0 chr1 91024618 91024662 -106170770 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1279 417 250 20 0 chr1 91024672 91024771 -106170661 + PB1D7 SINE Alu 1 102 -18 3 1279 528 16 0 0 chr1 91025299 91025360 -106170072 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 3 1279 244 352 19 19 chr1 91025816 91025923 -106169509 - PB1D7 SINE Alu -13 107 1 3 1279 520 258 77 67 chr1 91026451 91026646 -106168786 - B3A SINE B2 0 198 2 3 1279 374 273 101 0 chr1 91026713 91026812 -106168620 - PB1D10 SINE Alu -8 109 1 3 1279 210 37 0 0 chr1 91026813 91026840 -106168592 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 1279 372 22 0 0 chr1 91026842 91026887 -106168545 + (TTGG)n Simple_repeat Simple_repeat 1 45 0 4 1279 642 171 0 0 chr1 91029317 91029440 -106165992 + (TGGA)n Simple_repeat Simple_repeat 1 123 0 4 1279 333 0 0 0 chr1 91031071 91031108 -106164324 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1279 1294 233 85 37 chr1 91031796 91032148 -106163284 - ORR1D2 LTR MaLR -1 369 1 4 1279 240 337 42 32 chr1 91034620 91034715 -106160717 - B4 SINE B4 -40 252 157 4 1279 333 0 0 0 chr1 91034909 91034946 -106160486 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1279 180 0 0 0 chr1 91036488 91036508 -106158924 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1279 1037 204 160 55 chr1 91036929 91037272 -106158160 + MTEa LTR MaLR 1 379 0 4 1279 548 312 13 13 chr1 91038752 91038911 -106156521 + RSINE1 SINE B4 3 161 -4 4 1279 189 0 0 0 chr1 91039001 91039022 -106156410 + (GGGTG)n Simple_repeat Simple_repeat 5 25 0 4 1279 792 122 98 0 chr1 91039372 91039495 -106155937 + B1_Mus1 SINE Alu 1 135 -13 5 1279 1534 210 74 20 chr1 91042661 91043055 -106152377 + MTD LTR MaLR 5 419 0 5 1279 216 97 0 0 chr1 91044994 91045025 -106150407 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 5 1279 204 182 0 0 chr1 91045909 91045953 -106149479 + (TATG)n Simple_repeat Simple_repeat 1 44 0 5 1279 642 280 0 52 chr1 91045959 91046151 -106149281 - B3A SINE B2 -16 182 1 5 1279 1117 264 58 29 chr1 91046895 91047290 -106148142 + MTE2a LTR MaLR 1 417 -2 5 1279 210 143 0 0 chr1 91049639 91049674 -106145758 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1279 417 121 0 0 chr1 91051672 91051755 -106143677 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 5 1279 291 374 23 34 chr1 91052478 91052655 -106142777 + ORR1E LTR MaLR 10 184 -175 5 1279 253 245 147 86 chr1 91052988 91053104 -106142328 - MLT1C LTR MaLR -7 460 338 5 1279 466 184 184 0 chr1 91053392 91053490 -106141942 + PB1D9 SINE Alu 5 120 0 6 1279 810 268 26 0 chr1 91053525 91053715 -106141717 + B3A SINE B2 4 198 0 6 1279 291 250 14 14 chr1 91054061 91054130 -106141302 - ID4 SINE ID -13 70 2 6 1279 308 255 14 121 chr1 91054130 91054273 -106141159 - PB1 SINE Alu -2 147 1 6 1279 259 274 105 0 chr1 91054663 91054758 -106140674 - Charlie4a DNA MER1_type -16 492 388 6 1279 322 106 0 0 chr1 91055589 91055636 -106139796 + MT2B2 LTR ERVL 273 319 -265 6 1279 271 336 33 100 chr1 91056364 91056635 -106138797 + YREP_Mm Unknown Unknown 40 292 -1520 6 1279 577 270 24 28 chr1 91056493 91056650 -106138782 - ID_B1 SINE B4 -38 254 91 6 1279 204 268 0 0 chr1 91056857 91056928 -106138504 + (TATG)n Simple_repeat Simple_repeat 4 74 0 6 1279 4833 63 0 0 chr1 91057029 91057613 -106137819 + MT2B2 LTR ERVL 1 584 0 6 1279 5137 34 2 0 chr1 91057667 91058257 -106137175 - L1Md_T LINE L1 0 6582 5992 7 1279 454 282 98 16 chr1 91058258 91058442 -106136990 - B4A SINE B4 -78 214 16 7 1279 211 278 0 18 chr1 91058486 91058541 -106136891 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1279 236 302 63 0 chr1 91058663 91058726 -106136706 + PB1D10 SINE Alu 40 106 -11 7 1279 325 0 44 0 chr1 91058730 91058775 -106136657 + (TATG)n Simple_repeat Simple_repeat 2 48 0 7 1279 846 240 11 11 chr1 91058791 91058972 -106136460 + B3A SINE B2 2 182 -16 7 1279 276 323 262 20 chr1 91059004 91059206 -106136226 + MLT1A1 LTR MaLR 28 278 -130 7 1279 810 149 24 14 chr1 91061909 91062051 -106133381 - MTD LTR MaLR 0 419 186 7 1279 1791 169 74 31 chr1 91062051 91062260 -106133172 - RMER17C LTR ERVK -2 408 204 7 1279 192 97 0 0 chr1 91062260 91062291 -106133141 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1279 1791 169 74 31 chr1 91062291 91062472 -106132960 - RMER17C LTR ERVK -207 203 2 7 1279 316 264 85 129 chr1 91062472 91062577 -106132855 - MTD LTR MaLR -144 185 93 7 1279 424 229 65 19 chr1 91062877 91062984 -106132448 + B1_Mur4 SINE Alu 38 149 -1 8 1279 185 398 17 8 chr1 91064396 91064515 -106130917 - MIR SINE MIR -15 247 128 8 1279 1125 172 86 20 chr1 91064523 91064828 -106130604 + RLTR11A LTR ERVK 1 399 -129 8 1279 435 19 0 0 chr1 91064828 91064880 -106130552 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1279 1778 229 76 16 chr1 91064884 91065333 -106130099 - RLTR20A2 LTR ERVK -102 476 1 8 1279 691 202 0 8 chr1 91065333 91065460 -106129972 + RLTR11A LTR ERVK 402 527 0 8 1279 258 295 103 0 chr1 91065461 91065539 -106129893 - MIR SINE MIR -141 121 36 8 1279 1824 138 152 6 chr1 91065566 91065757 -106129675 - ORR1C2 LTR MaLR 0 384 173 8 1279 543 31 0 0 chr1 91065757 91065822 -106129610 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1279 1824 138 152 6 chr1 91065822 91065965 -106129467 - ORR1C2 LTR MaLR -212 172 2 8 1279 396 287 129 37 chr1 91065996 91066159 -106129273 + B4A SINE B4 2 179 -113 8 1279 470 187 7 0 chr1 91066217 91066367 -106129065 + (CA)n Simple_repeat Simple_repeat 2 152 0 8 1279 2623 72 0 0 chr1 91066371 91066704 -106128728 - MTB_Mm LTR MaLR -8 399 67 9 1279 380 240 63 98 chr1 91066704 91066847 -106128585 - RSINE1 SINE B4 -26 139 2 9 1279 198 0 0 0 chr1 91066868 91066890 -106128542 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1279 298 176 0 0 chr1 91066903 91066954 -106128478 - B3 SINE B2 -5 211 161 9 1279 215 156 0 0 chr1 91066963 91067010 -106128422 - B3A SINE B2 -169 47 1 9 1279 462 274 17 8 chr1 91068692 91068810 -106126622 - PB1 SINE Alu -3 124 6 9 1279 21 57 0 0 chr1 91068847 91068882 -106126550 + AT_rich Low_complexity Low_complexity 1 35 0 9 1279 522 314 49 14 chr1 91068890 91069032 -106126400 - RSINE1 SINE B4 -17 148 2 9 1279 618 168 61 17 chr1 91069054 91069169 -106126263 + B1_Mus1 SINE Alu 1 120 0 9 1279 3098 27 11 5 chr1 91069171 91069590 -106125842 + L1Md_F3 LINE L1 6198 6584 0 9 1279 505 167 11 11 chr1 91070293 91070384 -106125048 - B1F1 SINE Alu -58 91 1 9 1279 243 247 32 96 chr1 91070300 91070394 -106125038 - MT2B2 LTR ERVL -344 240 153 1 1279 1230 179 9 5 chr1 91071724 91071943 -106123489 - URR1B DNA MER1_type -5 220 1 1 1279 907 179 109 0 chr1 91072054 91072238 -106123194 - B3 SINE B2 -11 205 2 1 1279 252 0 0 0 chr1 91072320 91072348 -106123084 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1279 1424 225 93 23 chr1 91072850 91073204 -106122228 - MTE2b LTR MaLR 0 379 1 1 1279 336 295 84 73 chr1 91073242 91073276 -106122156 + L1MEf LINE L1 966 997 -5418 1 1279 545 186 142 60 chr1 91073276 91073459 -106121973 + B3A SINE B2 1 198 0 1 1279 336 305 98 74 chr1 91073459 91073668 -106121764 + L1MEf LINE L1 967 1182 -5218 1 1279 298 274 20 111 chr1 91073997 91074067 -106121365 + MT2B LTR ERVL 101 248 -336 1 1279 588 200 0 0 chr1 91074067 91074167 -106121265 + PB1D9 SINE Alu 7 106 -14 1 1279 351 0 0 0 chr1 91074246 91074285 -106121147 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1279 1221 181 14 0 chr1 91074285 91074495 -106120937 + B3 SINE B2 4 216 0 1 1279 253 339 60 18 chr1 91074595 91074763 -106120669 + L1MEf LINE L1 4087 4261 -2058 1 1279 468 287 36 7 chr1 91074806 91074943 -106120489 + RSINE1 SINE B4 3 143 -22 1 1279 912 125 0 0 chr1 91074947 91075107 -106120325 + (CA)n Simple_repeat Simple_repeat 1 160 0 1 1279 25 31 0 0 chr1 91075132 91075164 -106120268 + AT_rich Low_complexity Low_complexity 1 32 0 1 1279 355 337 93 33 chr1 91075170 91075404 -106120028 + L1M5 LINE L1 4155 4396 -1750 1 1279 219 36 0 0 chr1 91075404 91075432 -106120000 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1279 355 337 93 33 chr1 91075432 91075467 -106119965 + L1M5 LINE L1 4397 4439 -1707 1 1279 249 230 122 0 chr1 91076164 91076238 -106119194 - MLT1A1 LTR MaLR -13 395 313 1 1279 1070 290 32 30 chr1 91077438 91077808 -106117624 + Lx8 LINE L1 6924 7294 -179 1 1279 4308 40 0 75 chr1 91077931 91078492 -106116940 - MURVY-LTR LTR ERV1 0 519 1 1 1279 2316 134 67 21 chr1 91079413 91079801 -106115631 + MTC LTR MaLR 16 421 0 1 1279 477 292 50 65 chr1 91080548 91080749 -106114683 + B3A SINE B2 1 198 0 1 1279 358 287 117 100 chr1 91081108 91081430 -106114002 + MLT1A1 LTR MaLR 71 396 -12 1 1279 302 291 68 71 chr1 91081437 91081731 -106113701 - ORR1E LTR MaLR -9 365 81 1 1279 488 271 0 17 chr1 91081732 91081852 -106113580 + B3A SINE B2 45 162 -36 1 1279 414 108 0 0 chr1 91081874 91081948 -106113484 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1279 264 260 0 20 chr1 91081966 91082017 -106113415 + B4 SINE B4 229 278 -14 1 1279 459 0 0 0 chr1 91082043 91082094 -106113338 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1279 459 246 0 18 chr1 91083384 91083496 -106111936 - RCHARR1 DNA MER1_type -22 952 843 1 1279 764 193 21 21 chr1 91083503 91083646 -106111786 + B1_Mur1 SINE Alu 6 148 -1 1 1279 2058 117 80 45 chr1 91083731 91084107 -106111325 + ORR1B1 LTR MaLR 1 389 -5 1 1279 258 32 0 0 chr1 91084508 91084539 -106110893 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1279 234 227 53 13 chr1 91084624 91084700 -106110732 + L1MD LINE L1 5053 5131 -1015 1 1279 460 282 38 15 chr1 91085131 91085264 -106110168 + B1F SINE Alu 1 136 -13 1 1279 1839 207 94 25 chr1 91085290 91085404 -106110028 + MTD LTR MaLR 1 109 -310 1 1279 243 0 0 0 chr1 91085404 91085431 -106110001 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1279 1839 207 94 25 chr1 91085431 91085708 -106109724 + MTD LTR MaLR 110 419 0 1 1279 1760 178 32 30 chr1 91086149 91086554 -106108878 + RMER17C LTR ERVK 5 410 0 1 1279 30 0 0 0 chr1 91087534 91087564 -106107868 + AT_rich Low_complexity Low_complexity 1 30 0 1 1279 361 0 41 0 chr1 91087648 91087697 -106107735 + (CCCCCT)n Simple_repeat Simple_repeat 2 52 0 1 1279 526 246 164 23 chr1 91088114 91088285 -106107147 + B3A SINE B2 2 196 -2 1 1279 850 241 29 5 chr1 91088287 91088471 -106106961 + B3 SINE B2 2 187 -29 1 1279 207 0 0 0 chr1 91088471 91088494 -106106938 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1279 850 241 29 5 chr1 91088494 91088513 -106106919 + B3 SINE B2 188 209 -7 1 1279 216 0 0 0 chr1 91089807 91089831 -106105601 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1279 1415 86 0 0 chr1 91089905 91090092 -106105340 + B2_Mm1a SINE B2 1 187 -6 1 1279 526 347 6 12 chr1 91090648 91090820 -106104612 + MLT1E2 LTR MaLR 5 175 -452 1 1279 198 0 0 0 chr1 91090918 91090940 -106104492 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1279 973 295 109 19 chr1 91091640 91091951 -106103481 + Tigger7 DNA MER2_type 18 356 -2135 1 1279 357 231 12 25 chr1 91092127 91092207 -106103225 - ID4_ SINE ID -1 82 4 1 1279 1140 136 97 20 chr1 91092232 91092427 -106103005 - B3 SINE B2 -6 210 1 1 1279 371 21 21 0 chr1 91092673 91092721 -106102711 + (CCCCCA)n Simple_repeat Simple_repeat 6 54 0 1 1279 260 362 72 0 chr1 91093049 91093187 -106102245 + Zaphod DNA Tip100 144 291 -3740 1 1279 242 56 0 27 chr1 91093246 91093283 -106102149 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1279 375 304 34 34 chr1 91093471 91093590 -106101842 - RSINE1 SINE B4 -44 121 3 1 1279 268 221 0 163 chr1 91093687 91093779 -106101653 - B4 SINE B4 -52 240 164 1 1279 413 189 29 22 chr1 91093703 91093795 -106101637 - B1F SINE Alu -7 142 53 1 1279 425 315 156 36 chr1 91093824 91094394 -106101038 + Zaphod DNA Tip100 3303 3957 -74 1 1279 297 0 0 0 chr1 91094417 91094450 -106100982 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1280 597 209 26 0 chr1 91095222 91095337 -106100095 - PB1D9 SINE Alu -1 119 2 1 1280 730 230 59 30 chr1 91095369 91095571 -106099861 - B3 SINE B2 0 216 9 1 1280 3171 11 0 54 chr1 91095648 91096036 -106099396 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1280 16227 35 54 6 chr1 91096036 91097989 -106097443 + IAPEz-int LTR ERVK 8 2055 -4426 1 1280 12912 25 3 3 chr1 91097986 91099446 -106095986 + IAPEz-int LTR ERVK 5022 6481 0 1 1280 3171 11 0 54 chr1 91099446 91099834 -106095598 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1280 814 304 37 78 chr1 91099990 91100311 -106095121 - MER2 DNA MER2_type 0 345 38 1 1280 224 250 0 0 chr1 91101883 91101935 -106093497 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 1 1280 776 194 151 0 chr1 91101988 91102174 -106093258 - MTEb LTR MaLR -46 333 120 1 1280 889 172 191 16 chr1 91102653 91102836 -106092596 - B3 SINE B2 0 216 2 1 1280 918 26 0 0 chr1 91102952 91103065 -106092367 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 1280 252 212 0 0 chr1 91103486 91103552 -106091880 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1280 258 266 47 0 chr1 91104164 91104228 -106091204 + RSINE1 SINE B4 4 70 -95 1 1280 620 153 29 0 chr1 91104376 91104513 -106090919 + CT-rich Low_complexity Low_complexity 2 142 0 1 1280 1209 242 92 0 chr1 91104766 91105047 -106090385 + Lx5 LINE L1 6544 6850 -200 1 1280 242 56 28 0 chr1 91105363 91105399 -106090033 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1280 180 77 0 0 chr1 91105529 91105555 -106089877 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1280 481 290 70 28 chr1 91105569 91105711 -106089721 - RSINE1 SINE B4 -15 150 3 1 1280 353 300 97 36 chr1 91105881 91106102 -106089330 + L1ME3B LINE L1 5662 5894 -279 1 1280 385 204 12 18 chr1 91107283 91107453 -106087979 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 1280 1653 190 93 6 chr1 91108502 91108846 -106086586 - ORR1D1 LTR MaLR 0 374 1 1 1280 481 263 9 0 chr1 91109051 91109165 -106086267 + RSINE1 SINE B4 4 118 -47 1 1280 21 0 0 0 chr1 91109349 91109370 -106086062 + AT_rich Low_complexity Low_complexity 1 21 0 1 1280 207 69 0 0 chr1 91109406 91109435 -106085997 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1280 555 309 34 0 chr1 91109435 91109578 -106085854 - RSINE1 SINE B4 -14 151 4 1 1280 1193 213 0 0 chr1 91109916 91110132 -106085300 - B3 SINE B2 0 216 1 1 1280 505 263 18 0 chr1 91110215 91110329 -106085103 + RSINE1 SINE B4 3 118 -47 1 1280 2084 108 34 22 chr1 91110894 91111216 -106084216 - ORR1A3 LTR MaLR 0 326 1 1 1280 2441 62 13 3 chr1 91111317 91111626 -106083806 + ORR1A2 LTR MaLR 16 327 0 1 1280 2155 123 48 97 chr1 91111966 91112184 -106083248 - ORR1B1 LTR MaLR 0 394 195 1 1280 3215 53 2 5 chr1 91112184 91112581 -106082851 + MTA_Mm LTR MaLR 1 396 0 1 1280 2155 123 48 97 chr1 91112581 91112776 -106082656 - ORR1B1 LTR MaLR -200 194 1 1 1280 190 174 42 42 chr1 91112811 91112859 -106082573 - MIRb SINE MIR -102 166 119 1 1280 39268 6 0 1 chr1 91113210 91119195 -106076237 + L1Md_A LINE L1 1 5586 -297 1 1280 9245 1 0 0 chr1 91119195 91120191 -106075241 + L1Md_A LINE L1 5587 6582 0 1 1280 754 176 114 43 chr1 91120487 91120671 -106074761 - MTD LTR MaLR -1 418 222 1 1280 280 219 154 146 chr1 91120687 91120776 -106074656 - RLTR40 LTR ERVK -693 124 32 1 1280 824 128 80 0 chr1 91120776 91120901 -106074531 - B1_Mus2 SINE Alu -12 135 1 1 1280 280 219 154 146 chr1 91120901 91120934 -106074498 - RLTR40 LTR ERVK -786 31 1 1 1280 26 0 0 0 chr1 91120982 91121008 -106074424 + AT_rich Low_complexity Low_complexity 1 26 0 1 1280 470 248 63 18 chr1 91121276 91121387 -106074045 + B1F SINE Alu 1 116 -33 1 1280 195 42 0 0 chr1 91121507 91121531 -106073901 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1280 3187 161 148 0 chr1 91123010 91123637 -106071795 - RMER6D LTR ERVK 0 720 1 1 1280 327 227 148 40 chr1 91123637 91123738 -106071694 + PB1D10 SINE Alu 6 117 0 1 1280 396 318 152 25 chr1 91123827 91124182 -106071250 - L1ME1 LINE L1 -200 5979 5580 1 1280 383 299 76 19 chr1 91124197 91124354 -106071078 - MER3 DNA MER1_type -39 170 5 1 1280 393 313 199 50 chr1 91125585 91125643 -106069789 - RMER15 LTR ERVL 0 575 515 1 1280 3360 43 5 0 chr1 91125643 91126037 -106069395 + MTA_Mm LTR MaLR 1 396 0 1 1280 393 313 199 50 chr1 91126037 91126240 -106069192 - RMER15 LTR ERVL -61 514 275 1 1280 744 357 23 35 chr1 91126499 91126844 -106068588 + MLT1H LTR MaLR 3 343 -206 1 1280 1045 252 120 0 chr1 91126962 91127228 -106068204 + ORR1D2 LTR MaLR 1 298 -72 1 1280 419 235 158 31 chr1 91127234 91127462 -106067970 - B4A SINE B4 -35 257 1 1 1280 463 297 84 31 chr1 91127981 91127999 -106067433 + MLT1D LTR MaLR 4 19 -486 2 1280 501 97 0 0 chr1 91127999 91128071 -106067361 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1280 463 297 84 31 chr1 91128071 91128243 -106067189 + MLT1D LTR MaLR 20 204 -301 2 1280 243 0 0 0 chr1 91128767 91128794 -106066638 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1280 396 0 0 0 chr1 91128850 91128894 -106066538 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1280 358 360 0 6 chr1 91130211 91130376 -106065056 + (CA)n Simple_repeat Simple_repeat 1 164 0 2 1280 187 314 119 65 chr1 91130402 91130603 -106064829 + L2 LINE L2 2305 2516 -903 2 1280 1114 243 28 31 chr1 91130657 91130946 -106064486 - MT2A LTR ERVL -183 350 63 2 1280 602 260 39 28 chr1 91130857 91131035 -106064397 - MTD LTR MaLR -239 180 1 2 1280 394 305 77 90 chr1 91131035 91131181 -106064251 - MER44D DNA MER2_type -474 231 89 2 1280 348 272 32 11 chr1 91132292 91132385 -106063047 + RSINE1 SINE B4 3 97 -68 2 1280 920 209 80 0 chr1 91132494 91132681 -106062751 - B3 SINE B2 -14 202 1 2 1280 311 264 29 41 chr1 91132699 91132869 -106062563 + (CAGAGA)n Simple_repeat Simple_repeat 3 170 0 2 1280 183 100 0 0 chr1 91132869 91132899 -106062533 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 2 1280 470 297 16 8 chr1 91133124 91133253 -106062179 - RCHARR1 DNA MER1_type -844 130 1 2 1280 967 255 53 11 chr1 91134088 91134350 -106061082 + B4A SINE B4 1 273 -19 2 1280 455 159 15 36 chr1 91134546 91134683 -106060749 + CT-rich Low_complexity Low_complexity 1 134 0 2 1280 906 275 20 72 chr1 91135170 91135476 -106059956 + B4 SINE B4 1 290 -2 2 1280 315 0 0 0 chr1 91135489 91135524 -106059908 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1280 405 0 0 0 chr1 91135524 91135568 -106059864 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1280 552 376 39 13 chr1 91135658 91135887 -106059545 + MER58B DNA MER1_type 1 235 -106 2 1280 181 253 106 71 chr1 91136287 91136372 -106059060 + L2b LINE L2 3285 3372 -3 2 1280 198 0 0 0 chr1 91137448 91137470 -106057962 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1280 7732 211 37 34 chr1 91137972 91138852 -106056580 - Lx6 LINE L1 -173 7287 6384 2 1280 2069 138 32 34 chr1 91138852 91139263 -106056169 - RMER17C LTR ERVK 0 410 1 2 1280 7732 172 47 49 chr1 91139263 91140228 -106055204 - Lx6 LINE L1 -1077 6383 5418 2 1280 236 154 0 19 chr1 91140268 91140321 -106055111 + (ATGGTG)n Simple_repeat Simple_repeat 2 53 0 2 1280 698 207 0 6 chr1 91140341 91140521 -106054911 + (ATG)n Simple_repeat Simple_repeat 1 179 0 2 1280 198 91 0 0 chr1 91140711 91140744 -106054688 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2 1280 315 0 0 0 chr1 91142790 91142825 -106052607 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1280 429 20 0 0 chr1 91142825 91142874 -106052558 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1280 4272 159 162 54 chr1 91143384 91143664 -106051768 - RLTR25B LTR ERVK 0 1028 625 2 1280 1250 70 53 16 chr1 91143664 91143852 -106051580 - B2_Mm2 SINE B2 0 195 1 2 1280 4272 159 162 54 chr1 91143852 91144499 -106050933 - RLTR25B LTR ERVK -404 624 1 2 1280 314 23 23 0 chr1 91144591 91144634 -106050798 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 1280 25 65 0 0 chr1 91144710 91144756 -106050676 + AT_rich Low_complexity Low_complexity 1 46 0 2 1280 261 180 0 0 chr1 91144825 91144875 -106050557 + (CATA)n Simple_repeat Simple_repeat 1 50 0 2 1280 818 96 17 9 chr1 91144879 91144995 -106050437 + MTC LTR MaLR 1 117 -304 2 1280 441 0 0 0 chr1 91145447 91145496 -106049936 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1280 217 51 25 25 chr1 91145521 91145561 -106049871 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1280 342 310 34 27 chr1 91145728 91145877 -106049555 + L3 LINE CR1 3447 3596 -893 2 1280 192 365 0 53 chr1 91146022 91146135 -106049297 + L3 LINE CR1 4072 4178 -311 2 1280 197 310 67 33 chr1 91146390 91146510 -106048922 - MIRc SINE MIR -20 248 125 2 1280 683 345 84 4 chr1 91146872 91147111 -106048321 - Tigger7 DNA MER2_type -2203 288 31 2 1280 229 247 24 12 chr1 91147134 91147216 -106048216 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 2 1280 366 247 0 0 chr1 91147223 91147401 -106048031 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1280 189 0 0 0 chr1 91147456 91147477 -106047955 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 2 1280 264 257 0 0 chr1 91148107 91148177 -106047255 + L1MB8 LINE L1 6103 6172 -6 2 1280 198 0 0 0 chr1 91148196 91148218 -106047214 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1280 738 258 36 31 chr1 91149094 91149290 -106046142 + MTEa LTR MaLR 2 198 -181 2 1280 549 254 0 8 chr1 91149334 91149457 -106045975 + MTEa LTR MaLR 160 281 -98 2 1280 1662 21 0 0 chr1 91149458 91149650 -106045782 + MT2_Mm LTR ERVL 302 493 0 2 1280 3622 5 0 0 chr1 91149650 91150045 -106045387 + MERVL-int LTR ERVL 1 395 -5090 2 1280 4526 6 0 0 chr1 91150042 91150525 -106044907 - MERVL-int LTR ERVL -2224 3261 2779 2 1280 303 262 12 36 chr1 91150534 91150617 -106044815 + MTEa LTR MaLR 299 379 0 2 1280 276 197 115 0 chr1 91150902 91150963 -106044469 - Charlie12 DNA MER1_type -8 2865 2798 2 1280 226 261 55 55 chr1 91151011 91151084 -106044348 + RMER30 DNA MER1_type 129 201 -1 2 1280 534 298 151 66 chr1 91151927 91152351 -106043081 - LTR16B2 LTR ERVL -2 460 1 2 1280 671 278 31 20 chr1 91152488 91152683 -106042749 - B3A SINE B2 0 198 2 2 1280 599 233 29 79 chr1 91153587 91153727 -106041705 - B1F2 SINE Alu -8 141 9 2 1280 23 33 0 0 chr1 91153987 91154017 -106041415 + AT_rich Low_complexity Low_complexity 1 30 0 2 1280 822 151 0 0 chr1 91154060 91154073 -106041359 + (TG)n Simple_repeat Simple_repeat 2 14 0 2 1280 315 0 0 0 chr1 91154073 91154108 -106041324 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1280 822 198 7 0 chr1 91154108 91154386 -106041046 + (TG)n Simple_repeat Simple_repeat 1 280 0 2 1280 501 272 239 13 chr1 91154394 91154625 -106040807 - B4A SINE B4 -3 289 7 2 1280 1193 61 0 0 chr1 91155879 91156017 -106039415 + B1_Mm SINE Alu 1 138 -9 2 1280 198 0 0 0 chr1 91156017 91156039 -106039393 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1280 468 0 0 0 chr1 91156735 91156787 -106038645 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1280 661 259 26 62 chr1 91156813 91157039 -106038393 - ID_B1 SINE B4 -5 219 2 2 1280 754 278 10 31 chr1 91158111 91158304 -106037128 + B4 SINE B4 95 283 -9 2 1280 1271 194 116 19 chr1 91158304 91158619 -106036813 - RLTR23 LTR ERV1 0 430 1 2 1280 363 89 0 0 chr1 91158625 91158681 -106036751 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1280 1305 235 143 20 chr1 91158684 91159140 -106036292 - RMER20B LTR ERVK -6 510 1 2 1280 260 336 84 14 chr1 91161074 91161216 -106034216 - MamGypLTR2 LTR Gypsy -85 1104 953 2 1280 252 281 202 42 chr1 91161216 91161267 -106034165 - LTR81B LTR ERV1? -85 1308 1085 2 1280 860 293 28 21 chr1 91161910 91162196 -106033236 + MER63D DNA AcHobo 16 303 -758 2 1280 539 276 19 19 chr1 91162819 91162978 -106032454 - RSINE1 SINE B4 -6 159 1 2 1280 867 298 56 158 chr1 91163220 91163651 -106031781 - RLTR18B LTR ERVK -125 387 1 2 1280 378 0 0 0 chr1 91163680 91163722 -106031710 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1280 665 290 46 39 chr1 91163762 91164042 -106031390 + B4A SINE B4 5 286 -6 2 1280 341 150 59 20 chr1 91164121 91164223 -106031209 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 2 1280 189 74 0 0 chr1 91165106 91165133 -106030299 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1280 1009 224 79 107 chr1 91165864 91166255 -106029177 - RMER10A LTR ERVL -62 380 1 2 1280 476 201 12 41 chr1 91167234 91167405 -106028027 + C-rich Low_complexity Low_complexity 6 171 0 2 1280 216 170 0 0 chr1 91167916 91167969 -106027463 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1280 323 156 0 59 chr1 91167980 91168048 -106027384 + HAL1-3A_ME LINE L1 1976 2039 -819 2 1280 199 292 111 0 chr1 91168552 91168624 -106026808 + MIR SINE MIR 94 173 -89 2 1280 822 278 35 21 chr1 91168643 91168926 -106026506 + B4A SINE B4 4 290 -2 2 1280 372 262 15 53 chr1 91169684 91169817 -106025615 + ORR1E LTR MaLR 6 133 -226 2 1280 1000 276 111 9 chr1 91169819 91170152 -106025280 - MTE2b LTR MaLR -5 374 8 2 1280 338 288 28 64 chr1 91170723 91170864 -106024568 - B4A SINE B4 -83 209 74 2 1280 865 139 14 14 chr1 91171010 91171156 -106024276 - B1_Mur4 SINE Alu 0 150 5 2 1280 615 278 30 59 chr1 91171192 91171291 -106024141 - B3A SINE B2 0 198 107 2 1280 3332 69 0 0 chr1 91171291 91171698 -106023734 + MTB_Mm LTR MaLR 1 407 0 2 1280 615 278 30 59 chr1 91171698 91171801 -106023631 - B3A SINE B2 -92 106 2 2 1280 897 230 58 10 chr1 91173169 91173375 -106022057 + B3 SINE B2 1 216 0 2 1280 503 293 50 43 chr1 91173406 91173545 -106021887 + RSINE1 SINE B4 21 160 -5 2 1280 249 316 49 66 chr1 91173532 91173654 -106021778 - RMER12 LTR ERVK -466 856 737 2 1280 292 255 31 41 chr1 91173910 91174008 -106021424 - PB1D7 SINE Alu -5 115 19 2 1280 934 242 65 108 chr1 91175153 91175523 -106019909 + ORR1E LTR MaLR 4 357 -2 2 1280 459 303 229 10 chr1 91175741 91176034 -106019398 + ORR1E LTR MaLR 3 359 0 2 1280 289 297 24 98 chr1 91176206 91176329 -106019103 - MER21B LTR ERV1 -158 705 592 2 1280 531 308 51 42 chr1 91176395 91176632 -106018800 - RMER2 LTR ERV1 0 567 329 2 1280 553 302 207 21 chr1 91176860 91177232 -106018200 - MER21B LTR ERV1 -370 493 53 2 1280 195 287 67 22 chr1 91177294 91177383 -106018049 - L4 LINE RTE -213 1816 1724 2 1280 865 295 19 0 chr1 91178211 91178479 -106016953 + B4A SINE B4 1 273 -19 2 1280 230 206 16 0 chr1 91178512 91178575 -106016857 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 2 1280 200 237 0 26 chr1 91178576 91178654 -106016778 + A-rich Low_complexity Low_complexity 2 77 0 2 1280 636 135 21 0 chr1 91178672 91178768 -106016664 + PB1D9 SINE Alu 22 119 -1 2 1280 785 271 28 9 chr1 91178775 91178987 -106016445 + B3 SINE B2 1 216 0 3 1280 750 260 76 99 chr1 91179619 91179961 -106015471 - ORR1E LTR MaLR -25 334 1 3 1280 351 44 0 0 chr1 91180584 91180629 -106014803 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1280 860 228 70 11 chr1 91180631 91180817 -106014615 - B3 SINE B2 -19 197 1 3 1280 309 323 109 60 chr1 91180828 91180881 -106014551 + MER47B DNA MER2_type 36 91 -327 3 1280 840 294 65 25 chr1 91180881 91181160 -106014272 - B4 SINE B4 0 292 3 3 1280 309 312 85 33 chr1 91181160 91181404 -106014028 + MER47B DNA MER2_type 92 418 0 3 1280 290 253 12 12 chr1 91181992 91182072 -106013360 - ID4 SINE ID -1 82 3 3 1280 348 208 0 104 chr1 91182208 91182451 -106012981 + G-rich Low_complexity Low_complexity 1 217 0 3 1280 237 306 19 93 chr1 91182748 91182856 -106012576 - MamGypLTR2b LTR Gypsy -789 133 34 3 1280 207 0 0 0 chr1 91183182 91183205 -106012227 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1280 21 0 0 0 chr1 91184505 91184526 -106010906 + AT_rich Low_complexity Low_complexity 1 21 0 3 1280 607 246 32 32 chr1 91186419 91186545 -106008887 + RSINE1 SINE B4 2 127 -38 3 1280 691 134 14 0 chr1 91186559 91186701 -106008731 + (TGAA)n Simple_repeat Simple_repeat 3 146 0 3 1280 5529 155 34 34 chr1 91186799 91188477 -106006955 + L1_Mur3 LINE L1 260 1938 -3942 3 1280 3495 72 14 45 chr1 91188479 91188971 -106006461 - L1_Mus2 LINE L1 0 6566 6090 3 1280 5086 65 9 8 chr1 91188971 91189838 -106005594 + L1_Mus2 LINE L1 5178 6050 -516 3 1280 13537 144 64 30 chr1 91189822 91191302 -106004130 + L1_Mur3 LINE L1 1913 3472 -2408 3 1280 207 0 0 0 chr1 91191302 91191325 -106004107 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1280 13537 144 64 30 chr1 91191325 91192467 -106002965 + L1_Mur3 LINE L1 3473 4622 -1258 3 1280 337 318 55 65 chr1 91192470 91192685 -106002747 + RSINE1 SINE B4 89 288 -4 3 1280 204 214 24 0 chr1 91192693 91192735 -106002697 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 1280 982 186 93 0 chr1 91192878 91193071 -106002361 + B3 SINE B2 6 216 0 3 1280 201 104 0 77 chr1 91193071 91193083 -106002349 + A-rich Low_complexity Low_complexity 3 13 0 3 1280 1166 82 0 0 chr1 91193083 91193230 -106002202 + B1_Mm SINE Alu 1 147 0 3 1280 201 104 0 77 chr1 91193230 91193269 -106002163 + A-rich Low_complexity Low_complexity 14 50 0 3 1280 21 0 0 0 chr1 91194110 91194131 -106001301 + AT_rich Low_complexity Low_complexity 1 21 0 3 1280 324 357 77 6 chr1 91194248 91194448 -106000984 - MIR SINE MIR -22 240 31 3 1280 515 309 101 40 chr1 91194653 91194965 -106000467 - ORR1E LTR MaLR -2 377 7 3 1280 207 286 0 0 chr1 91196058 91196107 -105999325 + MER5A DNA MER1_type 1 49 -140 3 1280 351 0 0 0 chr1 91196403 91196442 -105998990 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1280 1186 237 88 14 chr1 91196625 91196920 -105998512 + ORR1E LTR MaLR 3 319 -40 3 1280 1159 273 22 81 chr1 91196917 91196994 -105998438 - RCHARR1 DNA MER1_type -630 344 268 3 1280 288 0 0 0 chr1 91196994 91197026 -105998406 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1280 1159 273 22 81 chr1 91197026 91197307 -105998125 - RCHARR1 DNA MER1_type -707 267 8 3 1280 228 352 32 24 chr1 91197585 91197710 -105997722 - MLT1F2 LTR MaLR -419 141 16 3 1280 552 293 77 6 chr1 91200341 91200523 -105994909 - B3A SINE B2 -3 195 1 3 1280 450 238 49 10 chr1 91200545 91200647 -105994785 - PB1D10 SINE Alu -7 110 5 3 1280 2237 73 0 0 chr1 91200685 91200960 -105994472 + L1_Mus1 LINE L1 6293 6567 0 3 1280 432 224 0 30 chr1 91201433 91201534 -105993898 - PB1D10 SINE Alu -8 109 12 3 1280 253 301 38 106 chr1 91201450 91201610 -105993822 - ID_B1 SINE B4 -48 176 28 3 1280 397 334 106 34 chr1 91201724 91202316 -105993116 + L1M5 LINE L1 4548 5182 -964 3 1280 995 40 0 38 chr1 91202437 91202568 -105992864 + B1_Mm SINE Alu 22 147 0 3 1280 1654 167 18 171 chr1 91202767 91203207 -105992225 - ORR1D1 LTR MaLR -1 373 1 3 1280 198 0 0 0 chr1 91204372 91204394 -105991038 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1280 635 290 0 0 chr1 91204477 91204615 -105990817 + RSINE1 SINE B4 16 153 -12 3 1280 528 267 45 90 chr1 91204911 91205178 -105990254 + L1MC2 LINE L1 6085 6339 -5 3 1280 415 100 44 0 chr1 91206488 91206578 -105988854 + (CAGA)n Simple_repeat Simple_repeat 2 95 0 3 1280 216 0 0 0 chr1 91207512 91207536 -105987896 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 3 1280 821 193 7 0 chr1 91207536 91207670 -105987762 - B1_Mur1 SINE Alu -13 136 2 3 1280 882 251 44 0 chr1 91207682 91207865 -105987567 - B3 SINE B2 -18 198 8 3 1280 364 280 236 99 chr1 91208669 91208921 -105986511 - B4 SINE B4 -6 286 1 3 1280 670 301 85 133 chr1 91208936 91209393 -105986039 + MER82 DNA MER2_type 210 644 -9 3 1280 450 0 0 0 chr1 91210083 91210133 -105985299 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1280 282 246 14 14 chr1 91210133 91210203 -105985229 - ID4_ SINE ID -11 72 3 3 1280 511 240 24 16 chr1 91210220 91210347 -105985085 - B1F SINE Alu -1 148 21 3 1280 1138 127 169 0 chr1 91210948 91211137 -105984295 + URR1B DNA MER1_type 5 225 0 3 1280 390 255 19 19 chr1 91211137 91211245 -105984187 - MIRb SINE MIR -123 145 38 3 1280 356 149 0 13 chr1 91211426 91211501 -105983931 + CT-rich Low_complexity Low_complexity 1 74 0 3 1280 671 283 7 0 chr1 91211517 91211662 -105983770 - B1_Mur1 SINE Alu -2 147 2 3 1280 464 258 130 43 chr1 91212163 91212301 -105983131 - Lx8 LINE L1 -76 7397 7248 3 1280 236 363 122 14 chr1 91212539 91212687 -105982745 + MER33 DNA MER1_type 3 166 -158 3 1280 1442 198 65 73 chr1 91212893 91213275 -105982157 + MTEb LTR MaLR 1 379 0 3 1280 1529 215 142 14 chr1 91213470 91213837 -105981595 - MTD LTR MaLR 0 419 6 3 1280 1672 116 19 23 chr1 91214076 91214340 -105981092 + MTB_Mm LTR MaLR 1 263 -144 3 1280 211 184 0 0 chr1 91215069 91215107 -105980325 + C-rich Low_complexity Low_complexity 1 38 0 3 1280 527 266 68 81 chr1 91215750 91215971 -105979461 + RMER15 LTR ERVL 358 575 0 3 1280 403 318 64 108 chr1 91218034 91218330 -105977102 + ORR1E LTR MaLR 77 359 0 3 1280 448 309 112 62 chr1 91218333 91218592 -105976840 - MLT1B LTR MaLR -14 453 178 3 1280 818 245 26 66 chr1 91218592 91218894 -105976538 - B4A SINE B4 -2 290 1 3 1280 393 346 98 98 chr1 91218894 91219085 -105976347 - MLT1B LTR MaLR -281 186 3 3 1280 727 236 115 11 chr1 91219782 91219972 -105975460 - B3 SINE B2 -7 188 1 3 1280 32 0 0 0 chr1 91219980 91220012 -105975420 + AT_rich Low_complexity Low_complexity 1 32 0 3 1280 388 303 45 45 chr1 91220899 91221189 -105974243 + B4A SINE B4 1 290 -2 3 1280 275 150 0 16 chr1 91221270 91221331 -105974101 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 3 1280 313 279 68 73 chr1 91221598 91221803 -105973629 + L1MC LINE L1 3253 3456 -2690 3 1280 970 56 0 0 chr1 91221798 91221923 -105973509 - L1_Mm LINE L1 -2594 3289 3165 3 1280 6442 33 7 4 chr1 91221925 91222680 -105972752 + L1Md_F2 LINE L1 5826 6582 0 3 1280 1200 55 7 0 chr1 91222690 91222835 -105972597 + B1_Mus2 SINE Alu 2 147 0 3 1280 485 273 122 17 chr1 91222850 91223144 -105972288 + L1M2 LINE L1 3437 3761 -2382 3 1280 396 288 48 8 chr1 91223202 91223328 -105972104 + L1M5 LINE L1 4015 4145 -2001 3 1280 711 0 0 0 chr1 91223331 91223410 -105972022 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 3 1280 443 244 163 0 chr1 91223410 91223533 -105971899 + ID_B1 SINE B4 9 151 -73 3 1280 772 349 35 40 chr1 91223689 91224372 -105971060 + L1M5 LINE L1 4378 5057 -1089 3 1280 261 182 61 0 chr1 91224616 91224682 -105970750 + L1MC LINE L1 4639 4708 -1438 3 1280 301 279 15 0 chr1 91224682 91224750 -105970682 + polypurine Low_complexity Low_complexity 3 71 0 3 1280 228 281 18 0 chr1 91224799 91224856 -105970576 + GA-rich Low_complexity Low_complexity 4 61 0 3 1280 330 50 0 0 chr1 91225337 91225377 -105970055 + MTC LTR MaLR 5 44 -377 3 1280 1122 206 9 19 chr1 91225380 91225593 -105969839 - MTD LTR MaLR -196 223 13 3 1280 1541 192 60 162 chr1 91225627 91226052 -105969380 + MT2A LTR ERVL 3 524 -77 3 19 1182 139 77 34 chr1 91226052 91226261 -105969171 + URR1A DNA MER1_type 5 222 -4 3 1281 1153 190 22 188 chr1 91226261 91226324 -105969108 + MT2A LTR ERVL 525 551 -50 3 1281 452 43 0 42 chr1 91226324 91226396 -105969036 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1281 1153 190 22 188 chr1 91226396 91226439 -105968993 + MT2A LTR ERVL 552 593 -8 3 1281 1756 156 100 29 chr1 91226710 91227059 -105968373 - ORR1D1 LTR MaLR 0 374 1 3 1281 1476 181 108 52 chr1 91227059 91227402 -105968030 - ORR1D1-int LTR MaLR 0 1370 1009 3 1281 229 209 14 95 chr1 91227364 91227438 -105967994 - RMER12 LTR ERVK -54 1268 1201 3 1281 460 296 19 0 chr1 91227418 91227526 -105967906 - B3 SINE B2 -73 143 34 3 1281 297 0 0 0 chr1 91227526 91227559 -105967873 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 3 1281 871 181 7 0 chr1 91227560 91227704 -105967728 - B2_Mm2 SINE B2 -50 145 1 3 1281 816 304 33 29 chr1 91227731 91227975 -105967457 - B4A SINE B4 -46 246 2 3 1281 641 214 34 60 chr1 91228014 91228030 -105967402 - ID_B1 SINE B4 0 224 209 3 1281 997 273 91 83 chr1 91228030 91228405 -105967027 + MTE2a LTR MaLR 2 379 0 3 1281 641 214 34 60 chr1 91228405 91228537 -105966895 - ID_B1 SINE B4 -16 208 80 3 1281 493 316 92 35 chr1 91228799 91229187 -105966245 - MLT1D LTR MaLR -162 518 19 3 1281 433 275 40 114 chr1 91230542 91230743 -105964689 + B3A SINE B2 4 189 -9 3 1281 413 150 52 59 chr1 91231176 91231311 -105964121 - RMER17A LTR ERVK -283 468 335 3 1281 379 100 14 14 chr1 91231958 91232029 -105963403 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1281 746 192 0 0 chr1 91232038 91232163 -105963269 - B3A SINE B2 -73 125 1 3 1281 662 47 28 9 chr1 91232534 91232642 -105962790 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 3 1281 381 154 44 77 chr1 91232764 91232947 -105962485 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 3 1281 354 259 120 34 chr1 91233083 91233291 -105962141 + L1MC4 LINE L1 6784 7009 -1033 3 1281 396 40 0 0 chr1 91233827 91233877 -105961555 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 4 1281 3369 102 4 33 chr1 91233888 91234377 -105961055 + MT2C_Mm LTR ERVL 1 475 0 4 1281 293 256 13 13 chr1 91234939 91235018 -105960414 - B4 SINE B4 -213 79 1 4 1281 22 0 0 0 chr1 91235200 91235222 -105960210 + AT_rich Low_complexity Low_complexity 1 22 0 4 1281 271 297 59 0 chr1 91235257 91235375 -105960057 + L1M2 LINE L1 5095 5219 -924 4 1281 2604 154 10 0 chr1 91235749 91236164 -105959268 - MTC LTR MaLR 0 421 3 4 1281 847 219 40 6 chr1 91236215 91236423 -105959009 + B3A SINE B2 2 215 -1 4 1281 432 0 0 0 chr1 91238008 91238056 -105957376 + (TCC)n Simple_repeat Simple_repeat 2 49 0 4 1281 1041 264 85 8 chr1 91238150 91238410 -105957022 - B4 SINE B4 -6 286 7 4 1281 24 0 0 0 chr1 91238695 91238719 -105956713 + AT_rich Low_complexity Low_complexity 1 24 0 4 1281 1343 92 27 0 chr1 91238725 91238910 -105956522 - B2_Mm2 SINE B2 -5 190 1 4 1281 386 69 17 0 chr1 91239000 91239058 -105956374 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 4 1281 818 83 8 0 chr1 91239270 91239390 -105956042 + (GGAA)n Simple_repeat Simple_repeat 3 123 0 4 1281 741 206 90 0 chr1 91239511 91239666 -105955766 + B3 SINE B2 48 216 0 4 1281 1192 161 25 120 chr1 91239990 91240265 -105955167 - RLTR14 LTR ERV1 -133 249 1 4 1281 1655 187 119 44 chr1 91240317 91240708 -105954724 - MTD LTR MaLR -39 380 1 4 1281 234 62 0 0 chr1 91240744 91240776 -105954656 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1281 189 0 0 0 chr1 91242268 91242289 -105953143 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1281 5882 43 0 0 chr1 91242292 91242986 -105952446 - L1Md_F2 LINE L1 -12 6570 5877 4 1281 325 28 0 0 chr1 91242986 91243022 -105952410 + L1Md_F2 LINE L1 5806 5841 -743 4 1281 267 31 0 0 chr1 91243068 91243100 -105952332 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1281 311 215 31 51 chr1 91243689 91243787 -105951645 + L1MB8 LINE L1 6040 6135 -43 4 1281 289 258 33 33 chr1 91243898 91243990 -105951442 + MLT1E3 LTR MaLR 333 424 -200 4 1281 359 236 15 96 chr1 91244075 91244211 -105951221 - PB1 SINE Alu -2 125 1 4 1281 230 248 8 0 chr1 91244665 91244790 -105950642 + (TG)n Simple_repeat Simple_repeat 2 127 0 4 1281 522 215 71 40 chr1 91244876 91244967 -105950465 - B4A SINE B4 0 292 205 4 1281 2398 108 6 0 chr1 91244967 91245291 -105950141 + ORR1A3 LTR MaLR 1 326 0 4 1281 522 215 71 40 chr1 91245291 91245325 -105950107 - B4A SINE B4 -88 204 163 4 1281 2534 152 23 29 chr1 91246215 91246743 -105948689 + RLTR31_Mm LTR ERVK 1 487 -97 4 1281 558 224 170 72 chr1 91247819 91248084 -105947348 + B4 SINE B4 2 292 0 4 1281 273 214 28 28 chr1 91248226 91248298 -105947134 + (CATATA)n Simple_repeat Simple_repeat 5 76 0 4 1281 440 245 112 0 chr1 91248302 91248445 -105946987 + L1MA9 LINE L1 6152 6310 -2 4 1281 285 326 0 2 chr1 91248866 91248939 -105946493 + ID2 SINE ID 16 88 -64 4 1281 2396 122 19 11 chr1 91248939 91249303 -105946129 - ORR1B2 LTR MaLR 0 367 1 4 1281 246 363 0 32 chr1 91249303 91249323 -105946109 + BC1_Mm scRNA scRNA 89 106 -46 4 1281 306 0 0 0 chr1 91249491 91249525 -105945907 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1281 529 219 9 0 chr1 91249539 91249644 -105945788 - RSINE1 SINE B4 -57 108 3 4 1281 226 296 181 2 chr1 91250628 91250721 -105944711 - B1F SINE Alu 0 117 14 4 1281 1549 206 72 11 chr1 91251187 91251535 -105943897 - ORR1D2 LTR MaLR -1 369 1 4 1281 1021 218 22 0 chr1 91251576 91251755 -105943677 + B3 SINE B2 28 210 -6 4 1281 239 72 0 23 chr1 91251992 91252035 -105943397 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1281 22 0 0 0 chr1 91252478 91252500 -105942932 + AT_rich Low_complexity Low_complexity 1 22 0 4 1281 862 293 134 14 chr1 91252954 91253311 -105942121 + MLT1C LTR MaLR 60 459 -8 4 1281 1256 115 38 0 chr1 91253809 91253992 -105941440 + B2_Mm2 SINE B2 6 195 0 4 1281 216 0 0 0 chr1 91253992 91254016 -105941416 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 4 1281 672 286 37 11 chr1 91254992 91255183 -105940249 - B3A SINE B2 -2 196 1 4 1281 3385 48 2 0 chr1 91255379 91255778 -105939654 - MTB LTR MaLR 0 400 1 4 1281 396 186 0 0 chr1 91256493 91256606 -105938826 + CT-rich Low_complexity Low_complexity 2 114 0 4 1281 315 130 0 0 chr1 91256817 91256871 -105938561 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 4 1281 442 227 151 170 chr1 91257210 91257475 -105937957 + B4 SINE B4 33 292 0 4 1281 471 221 28 23 chr1 91257475 91257651 -105937781 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1281 1153 57 0 28 chr1 91258241 91258378 -105937054 + B1_Mus2 SINE Alu 2 136 -11 4 1281 338 57 19 0 chr1 91258378 91258431 -105937001 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 4 1281 297 0 0 0 chr1 91258905 91258938 -105936494 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1281 697 269 42 6 chr1 91258943 91259111 -105936321 - B3A SINE B2 -24 174 1 4 1281 2138 131 13 0 chr1 91259149 91259463 -105935969 - ORR1A3 LTR MaLR -8 318 1 4 1281 371 241 12 0 chr1 91259872 91259955 -105935477 + L1MCc LINE L1 1140 1223 -5200 4 1281 180 111 0 0 chr1 91260301 91260328 -105935104 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 4 1281 432 193 121 136 chr1 91260767 91260899 -105934533 - MTEa LTR MaLR -249 130 1 4 1281 293 346 36 29 chr1 91261439 91261579 -105933853 + MIR3 SINE MIR 67 207 -1 4 1281 529 284 26 115 chr1 91261689 91262048 -105933384 + MTEa LTR MaLR 43 379 0 4 1281 323 317 32 16 chr1 91262275 91262400 -105933032 + MLT1A1 LTR MaLR 282 408 0 4 1281 426 121 0 0 chr1 91263904 91263970 -105931462 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 4 1281 601 55 11 11 chr1 91264353 91264444 -105930988 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 4 1281 314 211 25 44 chr1 91264582 91264741 -105930691 + (TG)n Simple_repeat Simple_repeat 2 157 0 4 1281 203 266 18 35 chr1 91264755 91264868 -105930564 + (TG)n Simple_repeat Simple_repeat 1 111 0 4 1281 188 34 0 33 chr1 91264959 91264989 -105930443 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1281 1326 195 209 3 chr1 91265404 91265748 -105929684 + MTD LTR MaLR 5 419 0 4 1281 1383 131 341 7 chr1 91266336 91266611 -105928821 + ORR1B2 LTR MaLR 1 367 0 4 1281 386 274 73 71 chr1 91266611 91266798 -105928634 + MT2A LTR ERVL 331 601 0 4 1281 274 258 106 11 chr1 91266888 91266982 -105928450 - MLT1A1 LTR MaLR -39 369 267 4 1281 1290 80 0 0 chr1 91266986 91267162 -105928270 + (TTC)n Simple_repeat Simple_repeat 3 178 0 4 1281 291 114 0 0 chr1 91267163 91267207 -105928225 + (TTCTCC)n Simple_repeat Simple_repeat 3 46 0 4 1281 1387 84 10 10 chr1 91267238 91267430 -105928002 - B2_Mm2 SINE B2 -1 194 3 4 1281 697 172 249 6 chr1 91267986 91268167 -105927265 + URR1B DNA MER1_type 1 225 0 4 1281 763 285 274 30 chr1 91268185 91268648 -105926784 - Tigger7 DNA MER2_type -33 517 1 4 1281 2123 199 109 34 chr1 91268808 91269325 -105926107 - RLTR31A_Mm LTR ERVK 0 692 7 4 1281 869 268 83 25 chr1 91269571 91269847 -105925585 - B4A SINE B4 0 292 1 4 1281 486 0 0 0 chr1 91270471 91270525 -105924907 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1281 210 295 81 0 chr1 91270800 91270888 -105924544 - MIRb SINE MIR -10 258 151 4 1281 234 343 139 0 chr1 91271397 91271505 -105923927 - L2a LINE L2 -12 3414 3292 4 1281 255 336 70 31 chr1 91271879 91272008 -105923424 - ORR1E LTR MaLR -225 134 1 4 1281 263 294 156 39 chr1 91272019 91272224 -105923208 - L2a LINE L2 -273 3153 2925 4 1281 594 132 410 12 chr1 91272224 91272385 -105923047 + URR1B DNA MER1_type 1 225 0 4 1281 263 326 88 78 chr1 91272385 91272457 -105922975 - L2a LINE L2 -486 2933 2869 4 1281 1210 171 18 18 chr1 91272457 91272683 -105922749 - URR1A DNA MER1_type 0 226 1 4 1281 263 326 88 78 chr1 91272683 91272773 -105922659 - L2a LINE L2 -551 2868 2774 4 1281 682 271 44 0 chr1 91274633 91274814 -105920618 - B4A SINE B4 -92 200 12 4 1281 28 0 0 0 chr1 91274952 91274980 -105920452 + AT_rich Low_complexity Low_complexity 1 28 0 4 1281 699 315 127 18 chr1 91275059 91275389 -105920043 + ORR1D2 LTR MaLR 1 366 -4 4 1281 1368 297 163 22 chr1 91275393 91275944 -105919488 + ORR1D2-int LTR MaLR 1 629 -951 4 1281 1482 304 160 18 chr1 91275939 91276484 -105918948 + ORR1D2-int LTR MaLR 902 1527 -53 4 1281 672 288 150 35 chr1 91276484 91276797 -105918635 + ORR1D2 LTR MaLR 3 351 -8 4 1281 709 263 0 0 chr1 91276812 91276949 -105918483 + B1_Mus2 SINE Alu 9 145 -2 4 1281 464 0 18 0 chr1 91276949 91277005 -105918427 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 4 1281 414 70 14 27 chr1 91277013 91277086 -105918346 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1281 210 154 0 0 chr1 91277812 91277851 -105917581 + T-rich Low_complexity Low_complexity 3 41 0 4 1281 1221 262 29 67 chr1 91278052 91278456 -105916976 + MTD LTR MaLR 1 388 -31 4 1281 343 0 43 0 chr1 91278456 91278503 -105916929 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1281 1221 262 29 67 chr1 91278503 91278519 -105916913 + MTD LTR MaLR 389 404 -15 4 1281 247 361 50 0 chr1 91279007 91279126 -105916306 - MLT1C LTR MaLR -52 415 291 4 1281 407 259 155 7 chr1 91279140 91279288 -105916144 - MLT1C LTR MaLR -288 179 10 4 1281 492 210 130 0 chr1 91279301 91279401 -105916031 - ID_B1 SINE B4 -21 203 91 4 1281 322 259 161 0 chr1 91279329 91279410 -105916022 - PB1D10 SINE Alu -23 94 1 4 1281 551 246 90 0 chr1 91279430 91279552 -105915880 + ID_B1 SINE B4 82 214 -10 4 1281 882 54 0 0 chr1 91279553 91279665 -105915767 + (GA)n Simple_repeat Simple_repeat 1 112 0 4 1281 225 0 0 0 chr1 91279768 91279793 -105915639 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1281 277 234 167 13 chr1 91280563 91280641 -105914791 - MIR SINE MIR -142 120 31 4 1281 454 268 103 49 chr1 91281065 91281341 -105914091 + MLT2B4 LTR ERVL 1 306 -158 4 1281 519 17 0 0 chr1 91281344 91281404 -105914028 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1281 242 280 0 0 chr1 91282179 91282229 -105913203 + ID4_ SINE ID 34 83 0 4 1281 1127 191 33 19 chr1 91282309 91282522 -105912910 + B3 SINE B2 1 216 0 4 1281 23 0 0 0 chr1 91282522 91282545 -105912887 + AT_rich Low_complexity Low_complexity 1 23 0 5 1281 198 0 0 0 chr1 91282756 91282778 -105912654 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 5 1281 1210 68 0 0 chr1 91283323 91283470 -105911962 + B1_Mm SINE Alu 1 147 0 5 1281 276 115 18 55 chr1 91283630 91283685 -105911747 + B2_Mm2 SINE B2 129 181 -14 5 1281 965 248 14 0 chr1 91283843 91284053 -105911379 + ID_B1 SINE B4 11 223 -1 5 1281 301 228 0 0 chr1 91284723 91284780 -105910652 + RSINE1 SINE B4 80 136 -29 5 1281 459 0 0 0 chr1 91284787 91284838 -105910594 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1281 492 200 15 7 chr1 91285378 91285514 -105909918 + GA-rich Low_complexity Low_complexity 2 138 0 5 1281 1204 163 23 0 chr1 91285608 91285829 -105909603 + URR1A DNA MER1_type 1 226 0 5 1281 377 286 132 33 chr1 91286454 91286606 -105908826 - ID_B1 SINE B4 -56 168 2 5 1281 234 0 0 0 chr1 91286684 91286710 -105908722 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1281 1067 242 32 42 chr1 91286713 91286998 -105908434 - ORR1D1 LTR MaLR -92 282 1 5 1281 470 217 8 57 chr1 91287133 91287255 -105908177 + PB1D10 SINE Alu 1 116 -1 5 1281 947 298 17 38 chr1 91287733 91287752 -105907680 + MTEa LTR MaLR 1 15 -364 5 1281 1137 150 120 0 chr1 91287752 91287952 -105907480 + URR1A DNA MER1_type 1 224 -2 5 1281 947 298 17 38 chr1 91287952 91288225 -105907207 + MTEa LTR MaLR 16 287 -92 5 1281 1074 241 21 52 chr1 91288253 91288542 -105906890 - B4 SINE B4 -11 281 2 5 1281 2663 164 39 35 chr1 91288548 91289060 -105906372 + RLTR20B3 LTR ERVK 1 514 -63 5 1281 3411 38 2 0 chr1 91289675 91290070 -105905362 - MTA_Mm LTR MaLR 0 396 1 5 1281 308 246 67 0 chr1 91290734 91290850 -105904582 - L1MB7 LINE L1 -212 5971 5838 5 1281 186 200 256 12 chr1 91290899 91290985 -105904447 + L2 LINE L2 2694 2800 -619 5 1281 438 337 112 25 chr1 91291275 91291640 -105903792 + L1MC4 LINE L1 7386 7782 -260 5 1281 261 0 0 0 chr1 91291744 91291773 -105903659 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1281 557 320 0 0 chr1 91292696 91292846 -105902586 - RSINE1 SINE B4 -12 153 4 5 1281 295 262 250 45 chr1 91293266 91293398 -105902034 - RSINE1 SINE B4 -4 161 3 5 1281 325 317 339 46 chr1 91293451 91293714 -105901718 + MER2 DNA MER2_type 1 340 -5 5 1281 657 110 31 25 chr1 91294551 91294710 -105900722 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 5 1281 1099 229 31 31 chr1 91294767 91295028 -105900404 - MTE2a LTR MaLR 0 379 119 5 1281 261 0 0 0 chr1 91295048 91295077 -105900355 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 5 1281 1199 72 0 0 chr1 91295078 91295230 -105900202 - B2_Mm2 SINE B2 -41 154 3 5 1281 491 272 9 9 chr1 91295234 91295349 -105900083 - MTE2a LTR MaLR -259 120 6 5 1281 1580 216 48 28 chr1 91295318 91295676 -105899756 + MTEa LTR MaLR 15 379 0 5 1281 1166 228 6 129 chr1 91296088 91296445 -105898987 - MTC LTR MaLR 0 421 109 5 1281 1307 52 40 0 chr1 91296450 91296624 -105898808 + B2_Mm2 SINE B2 4 184 -11 5 1281 441 0 0 0 chr1 91296627 91296676 -105898756 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1281 353 132 0 0 chr1 91296681 91296734 -105898698 - MTC LTR MaLR -308 111 59 5 1281 304 289 7 104 chr1 91296750 91296885 -105898547 - ORR1E LTR MaLR -230 129 8 5 1281 414 330 98 81 chr1 91297894 91298253 -105897179 + MLT1A0 LTR MaLR 1 365 0 5 1281 1161 266 54 48 chr1 91298479 91298564 -105896868 + ORR1E LTR MaLR 1 83 -276 5 1281 1306 194 149 33 chr1 91298564 91298737 -105896695 + ORR1D1 LTR MaLR 1 189 -185 5 1281 303 49 0 0 chr1 91298737 91298778 -105896654 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1281 1306 194 149 33 chr1 91298778 91298939 -105896493 + ORR1D1 LTR MaLR 190 373 -1 5 1281 1161 266 54 48 chr1 91298939 91299204 -105896228 + ORR1E LTR MaLR 84 353 -6 5 1281 315 0 0 0 chr1 91299431 91299466 -105895966 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1281 370 48 0 0 chr1 91300648 91300690 -105894742 - L1Md_F2 LINE L1 -213 6369 6328 5 1281 845 77 0 8 chr1 91300690 91300821 -105894611 + L1Md_F2 LINE L1 6453 6582 0 5 1281 443 219 85 9 chr1 91301672 91301778 -105893654 - MTC-int LTR MaLR -287 971 858 5 1281 1042 166 8 11 chr1 91301767 91301974 -105893458 + MTC-int LTR MaLR 676 847 -411 5 1281 2537 130 52 5 chr1 91302096 91302498 -105892934 - MTC LTR MaLR 0 421 1 5 1281 549 234 15 38 chr1 91303227 91303360 -105892072 + RSINE1 SINE B4 14 143 -22 5 1281 2060 165 13 26 chr1 91303522 91303901 -105891531 + ORR1D1 LTR MaLR 1 374 0 5 1281 2318 135 65 0 chr1 91303902 91304272 -105891160 - ORR1B1 LTR MaLR 0 394 1 5 1281 210 309 108 31 chr1 91304478 91304498 -105890934 + B1F SINE Alu 9 148 -1 5 1281 370 217 82 36 chr1 91304498 91304608 -105890824 + ID_B1 SINE B4 110 224 0 5 1281 619 233 141 11 chr1 91304644 91304835 -105890597 + Lx8 LINE L1 6974 7189 -284 5 1281 315 0 0 0 chr1 91305073 91305108 -105890324 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1281 354 23 0 0 chr1 91305108 91305150 -105890282 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1281 278 310 211 49 chr1 91305200 91305486 -105889946 - MLT1C LTR MaLR 0 467 139 5 1281 1353 249 47 6 chr1 91305486 91305829 -105889603 + ORR1E LTR MaLR 3 359 0 5 1281 278 310 211 49 chr1 91305829 91305888 -105889544 - MLT1C LTR MaLR -329 138 66 5 1281 725 188 94 29 chr1 91306706 91306876 -105888556 + B3A SINE B2 2 182 -16 5 1281 308 254 70 36 chr1 91306960 91307174 -105888258 + MIR SINE MIR 37 264 -4 5 1281 284 0 28 0 chr1 91307552 91307588 -105887844 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1281 678 164 32 8 chr1 91307597 91307720 -105887712 - RSINE1 SINE B4 -38 127 2 5 1281 964 140 126 16 chr1 91307753 91307935 -105887497 + B3 SINE B2 4 205 -11 5 1281 1452 37 0 0 chr1 91307937 91308207 -105887225 + (GAA)n Simple_repeat Simple_repeat 1 270 0 5 1281 615 192 22 18 chr1 91308656 91308930 -105886502 + CT-rich Low_complexity Low_complexity 1 275 0 5 1281 332 127 0 18 chr1 91310300 91310356 -105885076 - L1_Mur1 LINE L1 -870 5016 4962 5 1281 1233 217 82 106 chr1 91310346 91310723 -105884709 + Lx5 LINE L1 6678 7045 -5 5 1281 693 319 57 59 chr1 91310741 91311128 -105884304 + MLT1B LTR MaLR 5 390 0 5 1281 885 276 122 42 chr1 91311128 91311513 -105883919 + MER47B DNA MER2_type 1 416 -2 5 1281 373 296 39 39 chr1 91312052 91312182 -105883250 - B4A SINE B4 -162 130 1 5 1281 3415 28 5 2 chr1 91312207 91312600 -105882832 - MTA_Mm LTR MaLR 0 396 3 5 1281 219 349 14 87 chr1 91313902 91314040 -105881392 - L2c LINE L2 -8 3379 3252 5 1281 234 307 0 120 chr1 91315184 91315284 -105880148 - Charlie9 DNA MER1_type -3 2754 2667 5 1281 722 170 11 33 chr1 91315328 91315510 -105879922 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 5 1281 198 236 0 0 chr1 91316200 91316255 -105879177 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 5 1281 336 236 0 14 chr1 91316274 91316347 -105879085 - B4A SINE B4 -219 73 2 5 1281 1816 191 39 20 chr1 91316793 91317150 -105878282 - MTEa LTR MaLR -12 367 4 5 1281 365 206 16 0 chr1 91317710 91317773 -105877659 + B4 SINE B4 19 82 -210 5 1281 5125 128 103 11 chr1 91317838 91318664 -105876768 - RMER19B LTR ERVK 0 902 1 5 1281 226 254 124 22 chr1 91318838 91318975 -105876457 + L1MC LINE L1 5316 5466 -2319 5 1281 1968 211 17 10 chr1 91319320 91319722 -105875710 - MTD LTR MaLR 0 419 15 5 1281 1008 251 61 4 chr1 91320326 91320554 -105874878 - ORR1D2 LTR MaLR 0 370 130 5 1281 407 239 130 57 chr1 91320557 91320674 -105874758 + B2_Mm2 SINE B2 2 136 -59 5 1281 441 0 0 0 chr1 91320674 91320723 -105874709 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1281 407 239 130 57 chr1 91320723 91320782 -105874650 + B2_Mm2 SINE B2 137 191 -4 5 1281 607 275 36 62 chr1 91320739 91320933 -105874499 - ORR1D2 LTR MaLR -181 189 1 5 1281 192 97 0 0 chr1 91321646 91321677 -105873755 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1281 255 174 0 0 chr1 91322323 91322369 -105873063 - ORR1D2 LTR MaLR -328 46 1 5 1281 396 278 81 62 chr1 91322872 91323033 -105872399 + MLT1F2 LTR MaLR 3 166 -394 5 1281 209 365 58 0 chr1 91323047 91323151 -105872281 + MIRc SINE MIR 45 154 -114 5 1281 501 17 0 0 chr1 91323472 91323530 -105871902 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1281 306 0 0 0 chr1 91323530 91323563 -105871869 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1281 512 254 87 53 chr1 91323571 91323721 -105871711 - RSINE1 SINE B4 -8 157 3 5 1281 198 214 39 19 chr1 91324433 91324485 -105870947 - MIR SINE MIR -130 78 25 5 1281 646 219 8 16 chr1 91324557 91324808 -105870624 + (CATA)n Simple_repeat Simple_repeat 1 249 0 5 1281 227 355 16 0 chr1 91325152 91325276 -105870156 + GA-rich Low_complexity Low_complexity 1 126 0 5 1281 549 254 24 0 chr1 91325726 91325852 -105869580 - B1F SINE Alu -17 132 4 5 1281 514 276 30 7 chr1 91325925 91326046 -105869386 + RSINE1 SINE B4 3 126 -39 5 1281 456 117 0 0 chr1 91326046 91326123 -105869309 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1281 514 276 30 7 chr1 91326123 91326136 -105869296 + RSINE1 SINE B4 127 139 -26 5 1281 1941 153 18 15 chr1 91326139 91326465 -105868967 + ORR1D1 LTR MaLR 48 374 0 5 1281 229 132 18 70 chr1 91326545 91326602 -105868830 + MLT1C LTR MaLR 399 452 -15 5 1281 574 241 36 0 chr1 91327680 91327817 -105867615 - B1_Mur1 SINE Alu -7 142 1 5 1281 213 65 0 0 chr1 91327837 91327868 -105867564 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1281 212 91 0 0 chr1 91327901 91327934 -105867498 + B1F SINE Alu 83 115 -34 5 1281 610 268 7 0 chr1 91328275 91328413 -105867019 + ID_B1 SINE B4 86 224 0 5 1281 186 43 0 0 chr1 91328504 91328527 -105866905 + (TTA)n Simple_repeat Simple_repeat 3 25 0 5 1281 256 326 122 29 chr1 91329143 91329181 -105866251 + B4 SINE B4 48 98 -194 5 1281 404 272 136 0 chr1 91329181 91329306 -105866126 + B1F SINE Alu 1 142 -7 6 1281 26 30 0 0 chr1 91329371 91329404 -105866028 + AT_rich Low_complexity Low_complexity 1 33 0 6 1281 709 222 52 0 chr1 91329413 91329566 -105865866 + RSINE1 SINE B4 3 163 -2 6 1281 283 255 55 101 chr1 91329598 91329707 -105865725 + MT2B LTR ERVL 157 260 -341 6 1281 730 214 8 0 chr1 91329611 91329742 -105865690 + B1_Mur1 SINE Alu 11 142 -7 6 1281 2438 143 37 12 chr1 91329793 91330196 -105865236 - MTC LTR MaLR -8 413 1 6 1281 728 178 170 12 chr1 91330199 91330364 -105865068 + B3 SINE B2 25 215 -1 6 1281 409 246 97 0 chr1 91330381 91330495 -105864937 - MER3 DNA MER1_type -18 191 67 6 1281 24 32 0 0 chr1 91330670 91330701 -105864731 + AT_rich Low_complexity Low_complexity 1 31 0 6 1281 309 254 69 62 chr1 91330764 91330894 -105864538 + L1M5 LINE L1 5310 5440 -800 6 1281 647 259 20 40 chr1 91331082 91331231 -105864201 + RSINE1 SINE B4 14 159 -6 6 1281 243 0 0 0 chr1 91331271 91331298 -105864134 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 1281 639 161 59 8 chr1 91331298 91331417 -105864015 - B1_Mus1 SINE Alu -13 135 11 6 1281 490 117 53 0 chr1 91331428 91331522 -105863910 + C-rich Low_complexity Low_complexity 6 104 0 6 1281 487 176 19 29 chr1 91331524 91331629 -105863803 + PB1D7 SINE Alu 17 120 0 6 1281 337 265 112 0 chr1 91331750 91331848 -105863584 + PB1D10 SINE Alu 1 109 -8 6 1281 446 160 0 13 chr1 91331853 91331929 -105863503 + ID4 SINE ID 2 76 -7 6 1281 315 225 56 0 chr1 91332011 91332082 -105863350 + PB1D10 SINE Alu 21 95 -22 6 1281 258 32 0 0 chr1 91332086 91332117 -105863315 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1281 1377 214 139 30 chr1 91333212 91333578 -105861854 - MTD LTR MaLR -7 412 7 6 1281 290 185 62 0 chr1 91333913 91333978 -105861454 - MLT1A LTR MaLR -20 345 277 6 1281 732 265 5 65 chr1 91334006 91334220 -105861212 - B4 SINE B4 0 292 92 6 1281 413 83 11 35 chr1 91334221 91334308 -105861124 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1281 481 260 44 30 chr1 91334308 91334443 -105860989 - B1F2 SINE Alu -11 138 2 6 1281 377 286 46 133 chr1 91334443 91334553 -105860879 - B4 SINE B4 -201 91 1 6 1281 359 289 25 80 chr1 91334671 91334833 -105860599 - MLT1A LTR MaLR -216 158 6 6 1281 237 239 0 29 chr1 91334973 91335042 -105860390 + G-rich Low_complexity Low_complexity 2 68 0 6 1281 222 328 58 19 chr1 91336501 91336625 -105858807 - MIRm SINE MIR -84 184 58 6 1281 459 261 50 14 chr1 91336924 91337064 -105858368 + B1F SINE Alu 5 149 0 6 1281 603 102 0 0 chr1 91337100 91337188 -105858244 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1281 375 23 0 0 chr1 91337188 91337231 -105858201 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1281 1030 147 51 35 chr1 91337279 91337476 -105857956 - B3 SINE B2 -6 210 11 6 1281 266 213 51 39 chr1 91337407 91337485 -105857947 - ID4 SINE ID -4 79 1 6 1281 270 0 0 0 chr1 91337765 91337795 -105857637 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1281 198 0 0 0 chr1 91337795 91337816 -105857616 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1281 564 15 0 0 chr1 91337816 91337880 -105857552 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1281 247 183 33 16 chr1 91337992 91338053 -105857379 + MER2 DNA MER2_type 98 159 -186 6 1281 460 333 21 27 chr1 91338106 91338294 -105857138 + MER2 DNA MER2_type 147 333 -12 6 1281 189 274 58 35 chr1 91338572 91338659 -105856773 + MIRc SINE MIR 20 108 -160 6 1281 1209 119 16 0 chr1 91338807 91338992 -105856440 - B2_Mm2 SINE B2 -6 189 2 6 1281 224 123 14 84 chr1 91339123 91339166 -105856266 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1281 234 0 0 0 chr1 91339166 91339192 -105856240 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1281 224 123 14 84 chr1 91339192 91339219 -105856213 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1281 633 237 15 0 chr1 91339254 91339389 -105856043 + RSINE1 SINE B4 1 137 -28 6 1281 396 0 0 0 chr1 91339396 91339440 -105855992 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1281 495 0 0 0 chr1 91339440 91339495 -105855937 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1281 256 239 183 11 chr1 91340385 91340478 -105854954 + B1_Mur1 SINE Alu 2 110 -39 6 1281 817 294 56 7 chr1 91340593 91340881 -105854551 + L1MB2 LINE L1 5624 5925 -246 6 1281 442 315 54 18 chr1 91341051 91341219 -105854213 + B4A SINE B4 2 175 -117 6 1281 842 43 121 0 chr1 91341276 91341392 -105854040 - B1_Mus1 SINE Alu -16 132 3 6 1281 236 235 69 158 chr1 91341392 91341493 -105853939 + B4 SINE B4 201 292 0 6 1281 252 329 13 0 chr1 91341494 91341570 -105853862 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 6 1281 1008 228 42 5 chr1 91341652 91341864 -105853568 - ID_B1 SINE B4 -3 221 2 6 1281 563 245 30 30 chr1 91341965 91342133 -105853299 + MLT1D LTR MaLR 243 410 -95 6 1281 2406 56 0 42 chr1 91342623 91342959 -105852473 - ORR1A1 LTR MaLR 0 346 25 6 1281 1709 54 58 8 chr1 91342943 91343186 -105852246 + MTB LTR MaLR 146 400 0 6 1281 322 343 30 7 chr1 91343456 91343591 -105851841 - RMER15 LTR ERVL -15 560 423 6 1281 270 0 0 0 chr1 91343597 91343627 -105851805 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 1281 28 86 0 0 chr1 91343889 91343959 -105851473 + AT_rich Low_complexity Low_complexity 1 70 0 6 1281 286 375 0 9 chr1 91344054 91344159 -105851273 - RSINE1 SINE B4 -61 104 1 6 1281 579 221 50 22 chr1 91344476 91344615 -105850817 + ID_B1 SINE B4 81 223 -1 6 1281 254 333 34 88 chr1 91344626 91344774 -105850658 + RSINE1 SINE B4 1 140 -25 6 1281 560 280 106 85 chr1 91345145 91345523 -105849909 + MLT1D LTR MaLR 1 386 -119 6 1281 339 281 8 66 chr1 91345827 91345949 -105849483 + PB1D10 SINE Alu 3 117 0 6 1281 232 252 129 20 chr1 91346001 91346102 -105849330 - MLT1G3 LTR MaLR -64 531 420 6 1281 1031 316 35 10 chr1 91347163 91347473 -105847959 + MTEa LTR MaLR 20 337 -42 6 1281 1209 117 16 26 chr1 91347488 91347681 -105847751 - B2_Mm2 SINE B2 -4 191 1 6 1281 719 276 49 0 chr1 91347717 91347902 -105847530 - B3A SINE B2 0 198 5 6 1281 294 349 163 0 chr1 91348208 91348380 -105847052 - L2a LINE L2 -15 3411 3212 6 1281 218 338 44 15 chr1 91348534 91348669 -105846763 - L2a LINE L2 -214 3212 3074 6 1281 766 326 62 3 chr1 91348763 91349055 -105846377 + MLT1B LTR MaLR 8 316 -74 6 1281 253 291 194 42 chr1 91349213 91349378 -105846054 + LTR40a LTR ERVL 302 491 -28 6 1281 310 230 81 0 chr1 91349403 91349490 -105845942 + ID_B1 SINE B4 129 222 -2 6 1281 266 328 0 0 chr1 91349930 91350002 -105845430 - B1F SINE Alu -27 93 22 6 1281 237 297 228 11 chr1 91350037 91350221 -105845211 - L2a LINE L2 -1022 2397 2174 6 1281 21 71 0 0 chr1 91351314 91351356 -105844076 + GC_rich Low_complexity Low_complexity 1 42 0 6 1281 444 147 0 0 chr1 91351806 91351881 -105843551 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 6 1281 32 86 0 0 chr1 91351902 91351983 -105843449 + GC_rich Low_complexity Low_complexity 1 81 0 6 1281 718 151 0 0 chr1 91352021 91352140 -105843292 + RMER1B Other Other 596 714 -352 6 1281 3037 295 78 29 chr1 91354638 91355748 -105839684 - Lx8 LINE L1 -11 7462 6299 6 1281 722 183 57 52 chr1 91355753 91355961 -105839471 + B3A SINE B2 1 201 -15 6 1281 208 333 0 0 chr1 91355963 91356035 -105839397 + (CATG)n Simple_repeat Simple_repeat 3 74 0 6 1281 24 0 0 0 chr1 91356275 91356299 -105839133 + AT_rich Low_complexity Low_complexity 1 24 0 6 1282 3314 129 31 33 chr1 91357559 91358135 -105837297 - RMER15 LTR ERVL 0 575 1 6 1282 795 130 0 0 chr1 91358920 91359089 -105836343 + (TG)n Simple_repeat Simple_repeat 1 169 0 6 1282 323 245 126 23 chr1 91359246 91359401 -105836031 - MER5A DNA MER1_type -2 187 1 6 1282 4830 196 82 58 chr1 91360126 91361427 -105834005 - Lx9 LINE L1 0 7644 6314 6 1282 1260 247 64 31 chr1 91362866 91363225 -105832207 - MTEa LTR MaLR 0 379 9 6 1282 212 297 0 0 chr1 91366126 91366190 -105829242 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1282 321 26 0 0 chr1 91366218 91366256 -105829176 + (TCTCTG)n Simple_repeat Simple_repeat 6 43 0 6 1282 391 225 0 90 chr1 91366586 91366708 -105828724 - ID_B1 SINE B4 -1 223 113 6 1282 249 314 59 0 chr1 91366724 91366826 -105828606 - PB1D10 SINE Alu -9 108 1 6 1282 456 19 0 0 chr1 91368823 91368876 -105826556 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1282 258 173 19 19 chr1 91368913 91368966 -105826466 - B4 SINE B4 -5 287 235 6 1282 419 325 19 44 chr1 91368977 91369135 -105826297 - B4 SINE B4 -123 169 16 6 1282 557 293 69 21 chr1 91369755 91370044 -105825388 - L1M5 LINE L1 -360 5819 5517 6 1282 345 260 40 16 chr1 91370339 91370452 -105824980 + MER20 DNA MER1_type 45 159 -60 6 1282 194 156 22 0 chr1 91370979 91371024 -105824408 + CT-rich Low_complexity Low_complexity 2 47 0 6 1282 249 285 54 12 chr1 91371056 91371095 -105824337 + (TCTCTG)n Simple_repeat Simple_repeat 2 43 0 6 1282 273 109 0 0 chr1 91371095 91371141 -105824291 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1282 275 245 19 64 chr1 91371141 91371284 -105824148 + (TCTG)n Simple_repeat Simple_repeat 1 136 0 6 1282 189 74 0 0 chr1 91371284 91371311 -105824121 + (TCTCTG)n Simple_repeat Simple_repeat 5 31 0 6 1282 275 245 19 64 chr1 91371311 91371333 -105824099 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 6 1282 491 263 100 50 chr1 91372706 91372886 -105822546 + B3 SINE B2 3 191 -25 6 1282 680 275 52 60 chr1 91372912 91373160 -105822272 - B4 SINE B4 -41 251 6 6 1282 300 111 0 0 chr1 91373264 91373309 -105822123 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1282 793 280 68 0 chr1 91374126 91374333 -105821099 + ID_B1 SINE B4 3 223 -1 7 1282 401 319 45 61 chr1 91375968 91376283 -105819149 - MLT1B LTR MaLR -69 321 5 7 1282 501 288 8 8 chr1 91376703 91376836 -105818596 - MTE2b LTR MaLR -129 250 118 7 1282 345 47 0 0 chr1 91377673 91377716 -105817716 + (GGA)n Simple_repeat Simple_repeat 1 43 0 7 1282 314 313 52 15 chr1 91378625 91378761 -105816671 - ID_B1 SINE B4 0 224 84 7 1282 272 240 186 20 chr1 91379097 91379199 -105816233 - B4A SINE B4 -172 120 2 7 1282 645 134 0 0 chr1 91380781 91380893 -105814539 + (TC)n Simple_repeat Simple_repeat 1 112 0 7 1282 345 169 71 59 chr1 91380904 91381020 -105814412 - B1F1 SINE Alu -5 144 32 7 1282 244 254 81 101 chr1 91381020 91381051 -105814381 - ID_B1 SINE B4 -3 219 76 7 1282 21 57 0 0 chr1 91381097 91381132 -105814300 + AT_rich Low_complexity Low_complexity 1 35 0 7 1282 228 244 33 109 chr1 91381136 91381228 -105814204 + B1F SINE Alu 7 91 -58 7 1282 762 245 48 48 chr1 91382203 91382409 -105813023 + B3 SINE B2 11 216 0 7 1282 243 0 0 0 chr1 91386682 91386709 -105808723 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1282 532 246 86 14 chr1 91386750 91386818 -105808614 + ID SINE ID 9 86 -138 7 1282 332 214 0 97 chr1 91386818 91386911 -105808521 + PB1D7 SINE Alu 1 84 -36 7 1282 693 194 23 21 chr1 91388514 91388695 -105806737 - B3 SINE B2 -10 185 7 7 1282 281 318 128 7 chr1 91389425 91389574 -105805858 - B4 SINE B4 -1 291 125 7 1282 24 0 0 0 chr1 91389816 91389840 -105805592 + AT_rich Low_complexity Low_complexity 1 24 0 7 1282 928 152 54 5 chr1 91390483 91390668 -105804764 - URR1A DNA MER1_type 0 226 33 7 1282 369 0 0 0 chr1 91391237 91391278 -105804154 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1282 556 279 138 63 chr1 91392102 91392370 -105803062 + B4A SINE B4 3 290 -2 7 1282 506 56 33 33 chr1 91392370 91392462 -105802970 + (GA)n Simple_repeat Simple_repeat 1 92 0 7 1282 247 282 0 0 chr1 91395308 91395386 -105800046 + CT-rich Low_complexity Low_complexity 2 79 0 7 1282 257 0 0 29 chr1 91395389 91395423 -105800009 + (TAA)n Simple_repeat Simple_repeat 1 33 0 7 1282 393 308 56 0 chr1 91395606 91395713 -105799719 + PB1D7 SINE Alu 1 113 -7 7 1282 376 307 121 21 chr1 91395881 91396021 -105799411 - RSINE1 SINE B4 -11 154 1 7 1282 746 146 94 7 chr1 91397038 91397176 -105798256 + B1_Mur4 SINE Alu 1 150 0 7 1282 204 321 0 67 chr1 91398550 91398730 -105796702 + G-rich Low_complexity Low_complexity 1 168 0 7 1282 1642 144 171 21 chr1 91400838 91401165 -105794267 + ORR1C2 LTR MaLR 1 376 -8 7 1282 1870 189 93 16 chr1 91401848 91402070 -105793362 + MT2A LTR ERVL 1 256 -277 7 1282 3407 31 10 0 chr1 91402070 91402462 -105792970 + MTA_Mm LTR MaLR 1 396 0 7 1282 1870 189 93 16 chr1 91402462 91402625 -105792807 + MT2A LTR ERVL 257 416 -117 7 1282 503 219 49 49 chr1 91402851 91402995 -105792437 - RSINE1 SINE B4 -4 161 18 7 1282 300 137 0 0 chr1 91403094 91403145 -105792287 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 7 1282 21 0 0 0 chr1 91403700 91403721 -105791711 + AT_rich Low_complexity Low_complexity 1 21 0 7 1282 206 267 11 0 chr1 91403971 91404061 -105791371 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1282 359 246 124 37 chr1 91404329 91404489 -105790943 + B3 SINE B2 29 188 -7 7 1282 1191 271 106 9 chr1 91404481 91404905 -105790527 + RMER5 LTR ERV1 70 534 0 7 1282 233 244 23 68 chr1 91405092 91405180 -105790252 - MTD LTR MaLR -7 412 329 7 1282 370 255 137 128 chr1 91405337 91405368 -105790064 - L1MB7 LINE L1 -42 6142 6106 7 1282 679 257 63 32 chr1 91405368 91405557 -105789875 + B3A SINE B2 1 195 -3 7 1282 370 255 137 128 chr1 91405557 91405759 -105789673 - L1MB7 LINE L1 -79 6105 5907 7 1282 198 0 0 0 chr1 91405759 91405781 -105789651 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 7 1282 883 261 65 1 chr1 91405917 91406290 -105789142 - L1MB7 LINE L1 -629 5549 5150 7 1282 990 242 63 37 chr1 91406300 91406600 -105788832 + MTE2b LTR MaLR 1 308 -71 7 1282 215 256 95 53 chr1 91406606 91406701 -105788731 - PB1 SINE Alu -28 99 1 7 1282 300 224 89 0 chr1 91406638 91406715 -105788717 - B4 SINE B4 -138 154 72 7 1282 603 126 0 0 chr1 91407607 91407702 -105787730 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 7 1282 231 36 0 0 chr1 91407914 91407942 -105787490 + (CTTG)n Simple_repeat Simple_repeat 3 30 0 7 1282 252 307 114 51 chr1 91408403 91408561 -105786871 - MIR SINE MIR -34 234 67 7 1282 367 302 9 36 chr1 91409684 91409794 -105785638 - PB1D7 SINE Alu -13 107 1 7 1282 278 244 209 52 chr1 91409977 91410111 -105785321 + ID_B1 SINE B4 68 222 -2 7 1282 302 215 255 11 chr1 91410281 91410375 -105785057 - PB1D10 SINE Alu 0 117 1 7 1282 1041 252 5 0 chr1 91412081 91412291 -105783141 + B3 SINE B2 1 211 -5 7 1282 252 59 0 0 chr1 91413508 91413542 -105781890 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1282 267 164 0 0 chr1 91414750 91414811 -105780621 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1282 866 120 42 14 chr1 91415218 91415362 -105780070 + B1_Mur4 SINE Alu 2 149 -1 7 1282 304 234 146 21 chr1 91416045 91416189 -105779243 + MLT1C LTR MaLR 300 461 -6 7 1282 216 0 0 0 chr1 91416384 91416408 -105779024 + (C)n Simple_repeat Simple_repeat 1 24 0 7 1282 2011 180 80 25 chr1 91417191 91417589 -105777843 + MTC LTR MaLR 1 420 -1 7 1282 229 261 195 106 chr1 91419054 91419290 -105776142 + RMER15 LTR ERVL 306 562 -13 7 1282 410 223 16 82 chr1 91421493 91421615 -105773817 - PB1D7 SINE Alu -1 119 6 7 1282 227 287 21 94 chr1 91421537 91421633 -105773799 - MT2B LTR ERVL -361 240 152 7 1282 566 280 103 38 chr1 91422273 91422572 -105772860 - Lx7 LINE L1 -371 5932 5589 7 1282 389 281 8 8 chr1 91423717 91423839 -105771593 + PB1 SINE Alu 5 126 -1 7 1282 487 273 22 79 chr1 91423897 91423919 -105771513 - CYRA11_Mm Unknown Y-chromosome -215 402 190 7 1282 1227 130 5 20 chr1 91423919 91424123 -105771309 + URR1A DNA MER1_type 7 207 -19 7 1282 26 64 0 0 chr1 91424879 91424926 -105770506 + AT_rich Low_complexity Low_complexity 1 47 0 7 1282 418 194 8 23 chr1 91425996 91426128 -105769304 + (TG)n Simple_repeat Simple_repeat 2 131 0 7 1282 243 0 0 0 chr1 91427131 91427158 -105768274 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1282 1224 62 0 0 chr1 91427165 91427311 -105768121 - B1_Mm SINE Alu 0 147 2 7 1282 346 296 46 30 chr1 91428076 91428273 -105767159 + MER58D DNA MER1_type 144 385 -1 7 1282 632 267 27 0 chr1 91428475 91428621 -105766811 - RSINE1 SINE B4 -13 152 3 7 1282 1036 199 48 4 chr1 91429137 91429364 -105766068 + MTD LTR MaLR 169 405 -14 7 1282 2701 148 39 40 chr1 91429470 91429964 -105765468 - Lx3C LINE L1 0 6976 6484 7 1282 496 272 19 6 chr1 91429966 91430125 -105765307 - L1MA5 LINE L1 0 6300 6140 7 1282 741 209 69 40 chr1 91430780 91430954 -105764478 - B3A SINE B2 -19 179 1 7 1282 191 326 42 0 chr1 91431053 91431148 -105764284 - MIRb SINE MIR -103 165 67 7 1282 261 0 0 0 chr1 91431360 91431389 -105764043 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1282 510 177 0 0 chr1 91431406 91431564 -105763868 + CT-rich Low_complexity Low_complexity 2 159 0 7 1282 216 0 0 0 chr1 91431564 91431588 -105763844 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1282 234 0 0 0 chr1 91433768 91433794 -105761638 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1282 1184 219 167 0 chr1 91433820 91434126 -105761306 - ORR1D2 LTR MaLR -13 357 1 7 1282 432 288 121 12 chr1 91434136 91434301 -105761131 - B4A SINE B4 -2 290 108 7 1282 1049 221 291 3 chr1 91434333 91434656 -105760776 - MTD LTR MaLR -3 416 1 7 1282 425 171 21 74 chr1 91435469 91435564 -105759868 - ORR1D2 LTR MaLR -18 352 263 7 1282 335 252 138 0 chr1 91435579 91435702 -105759730 - ORR1D2 LTR MaLR -190 180 41 7 1282 419 52 17 0 chr1 91436264 91436322 -105759110 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1282 370 306 18 9 chr1 91436357 91436469 -105758963 - MLT1A LTR MaLR -210 164 52 7 1282 1288 148 28 28 chr1 91438513 91438729 -105756703 - B3 SINE B2 0 216 1 7 1282 184 188 118 59 chr1 91439422 91439490 -105755942 - L2b LINE L2 -2 3373 3302 7 1282 439 176 38 25 chr1 91440112 91440269 -105755163 + (TCTG)n Simple_repeat Simple_repeat 4 162 0 7 1282 206 105 25 50 chr1 91442074 91442114 -105753318 + CT-rich Low_complexity Low_complexity 2 40 0 7 1282 249 33 0 0 chr1 91442156 91442186 -105753246 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1282 219 69 0 0 chr1 91442186 91442215 -105753217 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1282 596 182 40 0 chr1 91442690 91442816 -105752616 - B3 SINE B2 -38 178 48 7 1282 254 29 0 28 chr1 91443027 91443063 -105752369 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 7 1282 360 0 0 0 chr1 91445283 91445323 -105750109 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1282 586 309 64 21 chr1 91448595 91448963 -105746469 + MLT1C LTR MaLR 6 463 -4 7 1282 779 319 52 8 chr1 91449315 91449565 -105745867 - MLT2B1 LTR ERVL -250 270 10 7 1282 288 310 132 14 chr1 91449790 91449945 -105745487 + MIR SINE MIR 9 181 -81 7 1282 444 240 31 0 chr1 91450093 91450189 -105745243 + RSINE1 SINE B4 6 104 -61 7 1282 324 0 0 0 chr1 91450202 91450238 -105745194 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1282 293 239 0 16 chr1 91450271 91450346 -105745086 + B1F1 SINE Alu 43 148 -1 8 1282 214 29 28 28 chr1 91450432 91450468 -105744964 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 1282 2337 123 72 21 chr1 91450723 91451098 -105744334 + ORR1B1 LTR MaLR 1 394 0 8 1282 438 357 0 38 chr1 91451105 91451265 -105744167 + RSINE1 SINE B4 12 165 0 8 1282 450 0 0 0 chr1 91452556 91452606 -105742826 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1282 279 0 0 0 chr1 91454941 91454972 -105740460 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1282 180 0 0 0 chr1 91455314 91455334 -105740098 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 8 1282 349 206 0 0 chr1 91455382 91455445 -105739987 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 8 1282 201 39 0 0 chr1 91456305 91456331 -105739101 + (TCC)n Simple_repeat Simple_repeat 2 27 0 8 1282 291 28 0 0 chr1 91457758 91457794 -105737638 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1282 339 44 0 0 chr1 91457794 91457838 -105737594 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1282 342 67 0 0 chr1 91457857 91457902 -105737530 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1282 309 362 8 17 chr1 91457973 91458091 -105737341 - B4 SINE B4 -129 163 47 8 1282 1929 69 0 0 chr1 91458225 91458471 -105736961 - L1Md_F2 LINE L1 -2 6580 6335 8 1282 421 254 56 148 chr1 91459289 91459451 -105735981 - B1F SINE Alu -1 148 2 8 1282 202 121 0 29 chr1 91459757 91459791 -105735641 + A-rich Low_complexity Low_complexity 1 33 0 8 1282 427 200 78 43 chr1 91459936 91460051 -105735381 + 5S rRNA rRNA 3 121 0 8 1282 360 280 41 90 chr1 91460419 91460564 -105734868 + B4A SINE B4 78 215 -77 8 1282 949 49 0 0 chr1 91460443 91460565 -105734867 + B1_Mus2 SINE Alu 15 136 -11 8 1282 556 221 152 0 chr1 91461829 91461974 -105733458 + ID_B1 SINE B4 2 168 -56 8 1282 387 0 0 0 chr1 91463566 91463609 -105731823 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1282 638 294 107 16 chr1 91464318 91464622 -105730810 + MTE2b LTR MaLR 1 373 -6 8 1282 287 234 31 0 chr1 91464653 91464717 -105730715 + MLT1B LTR MaLR 44 109 -281 8 1282 260 301 86 26 chr1 91464854 91464970 -105730462 + MLT1B LTR MaLR 345 467 0 8 1282 245 301 24 12 chr1 91465677 91465761 -105729671 + CT-rich Low_complexity Low_complexity 2 86 0 8 1282 246 330 84 9 chr1 91465811 91465918 -105729514 + MER2 DNA MER2_type 40 154 -191 8 1282 180 0 0 0 chr1 91466339 91466359 -105729073 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1282 379 367 61 28 chr1 91469979 91470192 -105725240 + RMER15 LTR ERVL 352 571 -4 8 1282 2033 61 89 0 chr1 91470747 91471040 -105724392 - ORR1A2 LTR MaLR -8 319 1 8 1282 300 325 65 0 chr1 91471449 91471572 -105723860 + MER20 DNA MER1_type 1 131 -88 8 1282 241 270 0 75 chr1 91472511 91472591 -105722841 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 8 1282 303 234 0 45 chr1 91472526 91472593 -105722839 - BC1_Mm scRNA scRNA -83 69 6 8 1282 371 291 31 16 chr1 91472601 91472730 -105722702 - B1F SINE Alu -2 147 17 8 1282 1188 169 87 0 chr1 91473925 91474132 -105721300 - URR1B DNA MER1_type 0 225 1 8 1282 240 35 0 0 chr1 91474603 91474632 -105720800 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1282 802 310 43 25 chr1 91475178 91475456 -105719976 + B4A SINE B4 3 285 -7 8 1282 439 272 180 16 chr1 91476203 91476386 -105719046 - B3 SINE B2 -3 213 1 8 1282 214 255 86 67 chr1 91476429 91476534 -105718898 - B1F SINE Alu -1 148 42 8 1282 23 92 0 0 chr1 91476702 91476767 -105718665 + GC_rich Low_complexity Low_complexity 1 65 0 8 1282 28 0 0 0 chr1 91476786 91476814 -105718618 + GC_rich Low_complexity Low_complexity 1 28 0 8 1282 23 33 0 0 chr1 91476976 91477006 -105718426 + GC_rich Low_complexity Low_complexity 1 30 0 8 1282 24 0 0 0 chr1 91477290 91477314 -105718118 + GC_rich Low_complexity Low_complexity 1 24 0 8 1282 29 47 0 0 chr1 91477468 91477511 -105717921 + GC_rich Low_complexity Low_complexity 1 43 0 8 1282 23 54 0 0 chr1 91478022 91478059 -105717373 + GC_rich Low_complexity Low_complexity 1 37 0 8 1282 523 211 48 24 chr1 91479656 91479782 -105715650 + RSINE1 SINE B4 2 130 -35 8 1282 258 279 48 105 chr1 91480264 91480388 -105715044 + ID_B1 SINE B4 102 218 -6 8 1282 559 246 45 80 chr1 91480731 91480930 -105714502 + B3A SINE B2 2 193 -5 8 1282 180 0 0 0 chr1 91482316 91482336 -105713096 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 8 1282 748 259 74 10 chr1 91484322 91484525 -105710907 + ID_B1 SINE B4 7 222 -2 8 1282 464 321 69 29 chr1 91485016 91485189 -105710243 - RMER30 DNA MER1_type -7 195 16 8 1282 441 95 0 0 chr1 91485404 91485467 -105709965 + (TCC)n Simple_repeat Simple_repeat 1 63 0 8 1282 1272 121 0 8 chr1 91486253 91486504 -105708928 + (TGGA)n Simple_repeat Simple_repeat 1 249 0 8 1282 1799 201 49 49 chr1 91486601 91487027 -105708405 - RMER4A LTR ERVK 0 466 48 8 1282 1695 36 0 0 chr1 91487027 91487219 -105708213 - B2_Mm1t SINE B2 0 193 2 8 1282 1799 201 49 49 chr1 91487219 91487258 -105708174 - RMER4A LTR ERVK -419 47 1 8 1283 1170 226 78 91 chr1 91488521 91488882 -105706550 - MTE2b LTR MaLR 0 379 24 8 1283 355 308 25 25 chr1 91488787 91488907 -105706525 - MT2A LTR ERVL -413 120 1 8 1283 1164 152 57 0 chr1 91489514 91489725 -105705707 + URR1B DNA MER1_type 1 223 -2 8 1283 321 26 0 0 chr1 91489988 91490026 -105705406 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1283 294 282 14 0 chr1 91490087 91490158 -105705274 + ID4_ SINE ID 5 76 -7 8 1283 409 289 27 78 chr1 91490188 91490379 -105705053 + ID_B1 SINE B4 45 224 -68 8 1283 848 220 115 8 chr1 91491113 91491347 -105704085 - MTEb LTR MaLR -2 377 119 8 1283 252 157 59 0 chr1 91491367 91491418 -105704014 - MTEb LTR MaLR -323 56 3 8 1283 210 91 0 0 chr1 91492007 91492040 -105703392 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1283 729 262 22 57 chr1 91495910 91496137 -105699295 - ORR1D2 LTR MaLR -7 363 145 8 1283 259 280 13 0 chr1 91498909 91498984 -105696448 + ID4 SINE ID 5 80 -3 8 1283 608 322 5 37 chr1 91499257 91499473 -105695959 - ID_B1 SINE B4 0 224 16 8 1283 558 0 0 0 chr1 91499859 91499921 -105695511 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 8 1283 839 7 71 0 chr1 91501743 91501883 -105693549 + (TCCC)n Simple_repeat Simple_repeat 2 151 0 1 1283 711 0 0 0 chr1 91501883 91501961 -105693471 + (TTCTC)n Simple_repeat Simple_repeat 5 83 0 2 1283 204 146 24 0 chr1 91501961 91502002 -105693430 + CT-rich Low_complexity Low_complexity 2 43 0 3 1283 280 316 107 46 chr1 91502557 91502753 -105692679 - MIR SINE MIR -14 248 41 4 1283 614 213 29 14 chr1 91502976 91503114 -105692318 - B1F1 SINE Alu -7 142 3 5 1283 23 0 0 0 chr1 91506653 91506676 -105688756 + AT_rich Low_complexity Low_complexity 1 23 0 6 1283 249 289 21 32 chr1 91508511 91508604 -105686828 - MLT1A1 LTR MaLR -49 359 268 7 1283 2096 125 5 90 chr1 91509023 91509410 -105686022 - ORR1B1 LTR MaLR 0 394 41 8 1283 225 167 0 0 chr1 91509820 91509862 -105685570 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1283 240 143 0 0 chr1 91510015 91510057 -105685375 + (TGG)n Simple_repeat Simple_repeat 3 44 0 1 1283 198 0 0 0 chr1 91510801 91510823 -105684609 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 1 1283 633 291 46 18 chr1 91514387 91514604 -105680828 - ID_B1 SINE B4 0 224 2 1 1283 464 60 30 0 chr1 91517944 91518011 -105677421 + (TCCCC)n Simple_repeat Simple_repeat 1 69 0 1 1283 569 302 36 76 chr1 91519782 91520083 -105675349 + B4 SINE B4 4 292 0 1 1283 387 60 0 0 chr1 91520092 91520142 -105675290 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1283 775 144 36 16 chr1 91522338 91522521 -105672911 + B3 SINE B2 1 194 -1 1 1283 359 92 0 15 chr1 91523226 91523292 -105672140 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1283 943 79 64 14 chr1 91525318 91525459 -105669973 - B1_Mus1 SINE Alu 0 148 1 1 1283 1195 94 33 0 chr1 91525459 91525639 -105669793 - B2_Mm1t SINE B2 -4 189 3 1 1283 1048 240 108 17 chr1 91525640 91525984 -105669448 - MTE2a LTR MaLR -3 376 2 2 1283 414 0 0 0 chr1 91526812 91526858 -105668574 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1283 582 195 34 11 chr1 91527933 91528109 -105667323 + T-rich Low_complexity Low_complexity 1 180 0 2 1283 220 176 0 76 chr1 91528156 91528248 -105667184 + C-rich Low_complexity Low_complexity 1 85 0 2 1283 1102 89 18 0 chr1 91528252 91528420 -105667012 + (TTTCC)n Simple_repeat Simple_repeat 2 172 0 2 1283 414 198 78 10 chr1 91528614 91528716 -105666716 + PB1D7 SINE Alu 11 119 -1 2 1283 249 250 211 0 chr1 91528719 91528795 -105666637 + B1_Mur2 SINE Alu 7 98 -51 2 1283 203 0 37 0 chr1 91530377 91530404 -105665028 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1283 655 317 64 0 chr1 91531804 91532006 -105663426 + ID_B1 SINE B4 1 215 -9 2 1283 434 260 0 19 chr1 91533432 91533538 -105661894 + PB1D10 SINE Alu 14 117 0 2 1283 235 311 0 0 chr1 91534792 91534866 -105660566 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1283 316 368 32 0 chr1 91534866 91534991 -105660441 - ID_B1 SINE B4 -8 216 88 3 1283 1972 151 80 0 chr1 91535022 91535372 -105660060 - ORR1C1 LTR MaLR 0 378 1 3 1283 799 268 41 5 chr1 91536929 91537124 -105658308 - B3 SINE B2 -13 203 2 3 1283 764 278 19 14 chr1 91537834 91538049 -105657383 - ID_B1 SINE B4 -1 223 8 3 1283 217 288 110 0 chr1 91540184 91540257 -105655175 - ID SINE ID -142 82 2 3 1283 252 0 0 0 chr1 91540373 91540401 -105655031 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 3 1283 366 245 26 62 chr1 91540611 91540724 -105654708 + RSINE1 SINE B4 57 165 0 3 1283 509 237 150 17 chr1 91541264 91541444 -105653988 - ID_B1 SINE B4 0 224 21 3 1283 272 186 100 73 chr1 91541534 91541644 -105653788 + B2_Mm1a SINE B2 30 142 -51 3 1283 282 225 0 14 chr1 91542974 91543046 -105652386 - MIR SINE MIR -131 131 61 4 1283 216 0 0 0 chr1 91546329 91546353 -105649079 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1283 252 0 0 0 chr1 91546433 91546461 -105648971 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4 1283 1073 130 0 0 chr1 91546761 91546923 -105648509 - B2_Mm2 SINE B2 -31 164 3 4 1283 242 289 58 70 chr1 91546961 91547132 -105648300 + L1ME2z LINE L1 6216 6384 -60 4 1283 189 0 0 0 chr1 91547801 91547822 -105647610 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1283 577 275 47 7 chr1 91547835 91547985 -105647447 - RSINE1 SINE B4 -1 164 9 4 1283 303 104 0 0 chr1 91548173 91548221 -105647211 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1283 353 190 18 6 chr1 91549637 91549716 -105645716 - PB1D10 SINE Alu -36 91 14 4 1283 289 188 60 36 chr1 91549658 91549741 -105645691 - ID_B1 SINE B4 -71 153 69 4 1283 526 243 79 0 chr1 91553558 91553698 -105641734 - ID_B1 SINE B4 -8 216 66 5 1283 333 238 48 29 chr1 91554223 91554327 -105641105 + PB1D7 SINE Alu 5 110 -10 5 1283 28 61 0 0 chr1 91554409 91554458 -105640974 + AT_rich Low_complexity Low_complexity 1 49 0 5 1283 836 143 189 5 chr1 91554685 91554875 -105640557 - URR1B DNA MER1_type 0 225 1 5 1283 1081 247 80 30 chr1 91555840 91556177 -105639255 - ORR1D2 LTR MaLR -11 368 3 5 1283 281 274 96 78 chr1 91556321 91556436 -105638996 - PB1D10 SINE Alu -1 148 32 5 1283 1135 229 102 67 chr1 91558315 91558657 -105636775 - ORR1E LTR MaLR -5 354 1 5 1283 291 325 49 55 chr1 91559772 91559935 -105635497 - MLT1J LTR MaLR -201 311 150 5 1283 579 264 8 0 chr1 91561255 91561376 -105634056 + B1F SINE Alu 22 143 -6 5 1283 228 308 31 0 chr1 91562452 91562517 -105632915 - MER117 DNA MER1_type -35 162 96 5 1283 231 205 0 0 chr1 91562921 91562960 -105632472 + MIRc SINE MIR 84 122 -146 6 1283 21 36 0 0 chr1 91564880 91564908 -105630524 + AT_rich Low_complexity Low_complexity 1 28 0 6 1283 717 246 64 0 chr1 91570397 91570568 -105624864 - B3A SINE B2 -16 182 1 6 1283 300 158 0 0 chr1 91571694 91571751 -105623681 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1283 1012 275 80 39 chr1 91572515 91572878 -105622554 - MTEa LTR MaLR -1 378 1 6 1283 201 196 0 0 chr1 91575058 91575104 -105620328 + (TGG)n Simple_repeat Simple_repeat 1 46 0 6 1283 304 330 16 74 chr1 91575104 91575294 -105620138 - HAL1-2a_MD LINE L1 -505 2519 2341 6 1283 183 293 52 0 chr1 91576788 91576846 -105618586 - MIRc SINE MIR -120 148 88 6 1283 405 189 0 51 chr1 91578407 91578485 -105616947 - ID4_ SINE ID -8 75 2 6 1283 287 113 0 19 chr1 91580194 91580248 -105615184 + (CCCCCA)n Simple_repeat Simple_repeat 5 57 0 6 1283 240 283 0 0 chr1 91581171 91581224 -105614208 - Tigger5 DNA MER2_type -44 2362 2310 7 1283 306 287 50 72 chr1 91581227 91581366 -105614066 - Tigger5 DNA MER2_type -2174 232 97 7 1283 815 294 20 20 chr1 91581376 91581626 -105613806 + 7SK RNA RNA 1 250 -81 7 1283 905 321 80 49 chr1 91582355 91582662 -105612770 - L1MC1 LINE L1 -124 6209 5889 7 1283 815 272 36 117 chr1 91582662 91583074 -105612358 + MTE2a LTR MaLR 1 379 0 7 1283 905 321 80 49 chr1 91583074 91583657 -105611775 - L1MC1 LINE L1 -445 5888 5292 7 1283 390 339 122 14 chr1 91583955 91584176 -105611256 - Helitron1Nb_Mam RC Helitron -842 274 30 7 1283 544 252 49 21 chr1 91585896 91586038 -105609394 - MTE2b LTR MaLR -27 352 207 7 1283 229 152 0 42 chr1 91587006 91587054 -105608378 + MER72B LTR ERV1 684 729 -39 7 1283 628 259 61 0 chr1 91589033 91589164 -105606268 + RSINE1 SINE B4 1 139 -26 7 1283 180 0 0 0 chr1 91589211 91589231 -105606201 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1283 603 249 97 89 chr1 91590245 91590466 -105604966 + B4A SINE B4 10 230 -62 7 1283 360 338 35 92 chr1 91590466 91590639 -105604793 + RSINE1 SINE B4 2 164 -1 8 1283 424 322 192 12 chr1 91591561 91591940 -105603492 + Charlie4a DNA MER1_type 1 445 -63 8 1283 195 42 0 0 chr1 91592533 91592557 -105602875 + (CTG)n Simple_repeat Simple_repeat 3 26 0 8 1283 1118 179 282 29 chr1 91592971 91593248 -105602184 - MTD LTR MaLR -70 349 3 8 1283 597 297 106 22 chr1 91593743 91594183 -105601249 + MER68 LTR ERVL 27 556 -7 8 1283 738 345 99 40 chr1 91594291 91594765 -105600667 - MER44B DNA MER2_type 0 550 49 8 1283 805 322 87 36 chr1 91601798 91602255 -105593177 - MT2A LTR ERVL -2 552 35 8 1283 342 0 0 0 chr1 91603319 91603357 -105592075 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1283 282 125 0 0 chr1 91603361 91603409 -105592023 + (TCCA)n Simple_repeat Simple_repeat 4 51 0 8 1283 23 0 0 0 chr1 91605017 91605040 -105590392 + AT_rich Low_complexity Low_complexity 1 23 0 8 1283 225 128 0 0 chr1 91605092 91605139 -105590293 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 9 1283 184 370 8 85 chr1 91605399 91605517 -105589915 + L2 LINE L2 2461 2569 -850 9 1283 280 174 125 42 chr1 91605981 91606053 -105589379 - L4 LINE RTE -201 1828 1751 9 1283 1278 232 54 40 chr1 91608902 91609274 -105586158 + MTE2b LTR MaLR 3 379 0 9 1283 209 122 0 47 chr1 91610352 91610395 -105585037 + CT-rich Low_complexity Low_complexity 5 45 0 9 1283 299 305 79 60 chr1 91611827 91612109 -105583323 - MLT1B LTR MaLR -47 343 8 9 1283 1605 180 62 137 chr1 91612389 91612827 -105582605 + MTD LTR MaLR 1 405 -14 9 1283 229 328 33 0 chr1 91612881 91612942 -105582490 - MER58A DNA MER1_type -144 80 18 9 1283 864 242 45 10 chr1 91613034 91613234 -105582198 + B3 SINE B2 1 207 -9 9 1283 344 345 63 84 chr1 91613925 91614292 -105581140 + ORR1E LTR MaLR 1 359 0 9 1283 247 250 149 132 chr1 91615631 91615880 -105579552 - MLT1H2 LTR MaLR 0 489 237 1 1283 495 315 293 36 chr1 91616073 91616547 -105578885 - MLT1H2-int LTR MaLR -59 1350 755 1 1283 225 0 0 0 chr1 91617286 91617311 -105578121 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1 1283 705 254 32 37 chr1 91617320 91617508 -105577924 - B3A SINE B2 -11 187 1 1 1284 565 217 78 28 chr1 91619564 91619706 -105575726 - B1_Mur2 SINE Alu 0 149 1 1 1284 470 271 0 10 chr1 91620537 91620634 -105574798 + RSINE1 SINE B4 2 97 -68 1 1284 207 167 0 0 chr1 91622074 91622110 -105573322 + (CTGGGG)n Simple_repeat Simple_repeat 1 36 0 1 1284 276 222 0 120 chr1 91622112 91622204 -105573228 + ID4 SINE ID 1 81 -2 1 1284 431 324 172 9 chr1 91623978 91624199 -105571233 + MER47A DNA MER2_type 1 257 -109 1 1284 277 227 152 43 chr1 91624222 91624406 -105571026 + RLTR21 LTR ERVK 1053 1256 -316 1 1284 23 0 0 0 chr1 91625988 91626011 -105569421 + AT_rich Low_complexity Low_complexity 1 23 0 1 1284 685 183 237 0 chr1 91626017 91626186 -105569246 + B3 SINE B2 3 211 -5 1 1284 261 185 165 9 chr1 91626186 91626295 -105569137 + RMER17C LTR ERVK 136 261 -149 1 1284 26 50 0 0 chr1 91626295 91626335 -105569097 + AT_rich Low_complexity Low_complexity 1 40 0 1 1284 180 0 0 0 chr1 91627877 91627897 -105567535 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1284 261 287 27 36 chr1 91628956 91629068 -105566364 + (TGGG)n Simple_repeat Simple_repeat 1 111 0 1 1284 366 311 64 64 chr1 91629991 91630163 -105565269 + B4A SINE B4 1 172 -120 1 1284 315 0 0 0 chr1 91630455 91630490 -105564942 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1284 180 282 36 71 chr1 91631674 91631758 -105563674 - MIRb SINE MIR -26 242 162 1 1284 512 274 30 30 chr1 91633642 91633774 -105561658 + RSINE1 SINE B4 6 137 -28 1 1284 770 293 43 89 chr1 91634059 91634497 -105560935 - Charlie1a DNA MER1_type -619 836 419 1 1284 301 316 43 9 chr1 91634554 91634669 -105560763 - Charlie1a DNA MER1_type -1288 167 49 1 1284 423 0 0 0 chr1 91634829 91634876 -105560556 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1284 477 0 0 0 chr1 91634876 91634928 -105560504 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1284 21 71 0 0 chr1 91634933 91634975 -105560457 + AT_rich Low_complexity Low_complexity 1 42 0 1 1284 189 0 0 0 chr1 91636710 91636731 -105558701 + (CG)n Simple_repeat Simple_repeat 1 21 0 1 1284 552 15 0 0 chr1 91636731 91636795 -105558637 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1284 286 369 28 63 chr1 91637647 91637789 -105557643 - MTEa LTR MaLR -240 139 3 1 1284 336 200 0 0 chr1 91638252 91638327 -105557105 + (TGG)n Simple_repeat Simple_repeat 3 77 0 1 1284 440 278 114 75 chr1 91638407 91638687 -105556745 - ORR1E LTR MaLR -5 354 64 1 1284 1179 269 51 12 chr1 91638939 91639284 -105556148 - ORR1E LTR MaLR -3 376 4 1 1284 1219 260 62 3 chr1 91639386 91639741 -105555691 - Lx9 LINE L1 -88 7556 7181 1 1284 1602 142 69 0 chr1 91639821 91640082 -105555350 - MTC LTR MaLR -1 420 142 1 1284 216 270 54 0 chr1 91641023 91641097 -105554335 + L3 LINE CR1 1259 1336 -3153 1 1284 331 224 147 18 chr1 91643362 91643471 -105551961 - L1M LINE L1 -746 5378 5256 1 1284 678 122 0 0 chr1 91644093 91644200 -105551232 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1 1284 362 39 19 0 chr1 91644209 91644261 -105551171 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 1 1284 648 299 6 25 chr1 91644261 91644419 -105551013 - ID_B1 SINE B4 -13 211 57 1 1284 504 184 73 9 chr1 91645101 91645211 -105550221 - PB1D10 SINE Alu 0 117 1 1 1284 603 279 46 62 chr1 91645468 91645663 -105549769 + ID_B1 SINE B4 7 198 -26 1 1284 534 277 15 0 chr1 91645686 91645816 -105549616 + RSINE1 SINE B4 1 132 -33 1 1284 234 0 0 0 chr1 91646286 91646312 -105549120 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1284 230 250 18 0 chr1 91647437 91647493 -105547939 + CT-rich Low_complexity Low_complexity 1 57 0 1 1284 889 219 32 16 chr1 91649310 91649496 -105545936 + B3 SINE B2 1 189 -27 1 1284 384 190 0 0 chr1 91649513 91649592 -105545840 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1284 232 172 86 0 chr1 91649592 91649650 -105545782 + Zaphod DNA Tip100 67 129 -3902 1 1284 1656 21 0 25 chr1 91650726 91650924 -105544508 + B2_Mm1a SINE B2 1 193 0 1 1284 420 331 83 21 chr1 91651187 91651332 -105544100 + RSINE1 SINE B4 1 154 -11 1 1284 180 208 60 40 chr1 91653273 91653323 -105542109 - MER5A DNA MER1_type -132 57 7 1 1284 216 0 0 0 chr1 91653449 91653473 -105541959 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1284 579 253 60 0 chr1 91653535 91653685 -105541747 + RSINE1 SINE B4 5 163 -2 1 1284 260 356 139 30 chr1 91654671 91654908 -105540524 - LTR40a LTR ERVL -256 263 1 1 1284 2595 32 0 0 chr1 91655213 91655527 -105539905 - L1Md_T LINE L1 -14 5869 5556 1 1284 6390 8 0 4 chr1 91655527 91656232 -105539200 + L1Md_T LINE L1 5881 6582 0 1 1284 1135 236 117 34 chr1 91657044 91657369 -105538063 + MTD LTR MaLR 54 405 -14 1 1284 470 232 139 31 chr1 91657705 91657834 -105537598 - B1F2 SINE Alu -5 144 2 1 1284 24 0 0 0 chr1 91658152 91658176 -105537256 + AT_rich Low_complexity Low_complexity 1 24 0 1 1284 357 258 146 0 chr1 91658197 91658286 -105537146 - RSINE1 SINE B4 -44 121 20 1 1284 1055 251 100 72 chr1 91659188 91659548 -105535884 - MTE2a LTR MaLR -6 373 4 1 1284 2171 99 26 0 chr1 91659548 91659861 -105535571 + ORR1A4 LTR MaLR 1 321 -8 1 1284 260 327 44 26 chr1 91660098 91660211 -105535221 - PB1D10 SINE Alu -1 116 2 1 1284 244 333 0 0 chr1 91660157 91660223 -105535209 - B4 SINE B4 -152 140 75 1 1284 230 224 0 0 chr1 91660950 91661008 -105534424 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1284 387 238 125 87 chr1 91661444 91661628 -105533804 + MTE2b LTR MaLR 61 251 -128 1 1284 378 0 0 0 chr1 91661773 91661815 -105533617 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1284 529 221 18 9 chr1 91662013 91662127 -105533305 + B1_Mur2 SINE Alu 35 149 0 1 1284 423 0 0 0 chr1 91664166 91664213 -105531219 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1284 188 35 35 0 chr1 91664336 91664365 -105531067 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1284 5078 39 0 5 chr1 91664367 91664962 -105530470 - L1Md_T LINE L1 -2 6580 5989 1 1284 243 0 0 0 chr1 91666213 91666240 -105529192 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1284 801 209 18 35 chr1 91668348 91668517 -105526915 - MTC LTR MaLR -2 419 254 1 1284 295 320 20 10 chr1 91669232 91669333 -105526099 + PB1D7 SINE Alu 13 114 -6 1 1284 399 224 43 38 chr1 91669515 91669630 -105525802 + MTE2a LTR MaLR 258 379 0 1 1284 608 293 181 0 chr1 91670026 91670258 -105525174 + MER2 DNA MER2_type 71 344 -1 1 1284 2211 136 45 45 chr1 91670650 91671050 -105524382 - MTC LTR MaLR -8 413 14 1 1284 189 0 0 0 chr1 91671355 91671376 -105524056 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1284 596 227 72 13 chr1 91671390 91671542 -105523890 - MTC LTR MaLR -211 163 3 1 1284 448 238 283 12 chr1 91671565 91671731 -105523701 - B3 SINE B2 -4 212 2 1 1284 496 286 25 45 chr1 91671731 91671859 -105523573 - B4 SINE B4 -160 132 2 1 1284 225 303 30 0 chr1 91673551 91673617 -105521815 + ID4 SINE ID 2 69 -14 1 1284 939 253 211 13 chr1 91673773 91674081 -105521351 - MTE2b LTR MaLR -9 370 2 1 1284 291 114 0 0 chr1 91674839 91674883 -105520549 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1284 827 249 37 0 chr1 91675202 91675391 -105520041 - B3A SINE B2 -2 196 1 1 1284 602 220 147 47 chr1 91677112 91677303 -105518129 + B3 SINE B2 1 210 -6 1 1284 301 277 26 18 chr1 91679662 91679776 -105515656 - L1MB8 LINE L1 -43 6135 6021 1 1284 234 0 0 0 chr1 91680013 91680039 -105515393 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1284 240 0 24 48 chr1 91684429 91684471 -105510961 + (TTGG)n Simple_repeat Simple_repeat 4 44 0 1 1284 571 173 20 3 chr1 91684475 91684594 -105510838 - B1F2 SINE Alu -29 120 2 1 1284 456 300 33 13 chr1 91684594 91684651 -105510781 - ID SINE ID -143 81 22 1 1284 201 39 0 0 chr1 91686067 91686093 -105509339 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1284 1037 283 31 58 chr1 91687118 91687411 -105508021 + B4 SINE B4 8 292 0 1 1284 1958 80 49 0 chr1 91687445 91687732 -105507700 - Lx4A LINE L1 -310 6748 6448 1 1284 397 222 40 10 chr1 91687828 91687928 -105507504 - PB1D10 SINE Alu 0 120 18 1 1284 247 214 71 0 chr1 91687917 91687973 -105507459 + B3 SINE B2 71 130 -86 1 1284 320 269 67 0 chr1 91688197 91688301 -105507131 + L1MCa LINE L1 1849 1959 -4549 1 1284 473 221 0 0 chr1 91688331 91688417 -105507015 + B3A SINE B2 27 112 -86 1 1284 243 0 0 0 chr1 91688417 91688444 -105506988 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1284 1828 193 34 126 chr1 91688445 91688944 -105506488 - RCHARR1 DNA MER1_type -166 808 356 1 1284 364 304 15 74 chr1 91690915 91691050 -105504382 - MIRb SINE MIR -72 196 70 1 1284 243 259 0 0 chr1 91693006 91693060 -105502372 + L4 LINE RTE 1976 2029 0 1 1284 205 250 0 0 chr1 91693195 91693235 -105502197 - MIRm SINE MIR -22 254 215 1 1284 495 0 0 0 chr1 91694351 91694406 -105501026 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1284 453 306 57 17 chr1 91696773 91696996 -105498436 - MIRb SINE MIR -28 240 2 1 1284 4233 143 28 39 chr1 91697859 91698624 -105496808 - RMER6A LTR ERVK 0 756 1 1 1284 334 319 58 31 chr1 91699149 91699340 -105496092 - L1MB7 LINE L1 -135 6049 5854 2 1284 250 301 91 69 chr1 91699508 91699683 -105495749 - L1MB7 LINE L1 -419 5755 5577 2 1284 462 18 0 0 chr1 91699891 91699946 -105495486 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1284 233 312 38 86 chr1 91700001 91700022 -105495410 - RSINE1 SINE B4 -63 102 3 2 1284 442 191 36 0 chr1 91700022 91700106 -105495326 - B3A SINE B2 -110 88 2 2 1284 276 322 236 7 chr1 91700112 91700166 -105495266 - MTEa LTR MaLR -202 177 91 2 1284 1613 185 108 41 chr1 91700166 91700555 -105494877 - MTD LTR MaLR -3 416 2 2 1284 276 322 236 7 chr1 91700555 91700644 -105494788 - MTEa LTR MaLR -289 90 2 2 1284 197 31 94 0 chr1 91700955 91700987 -105494445 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1284 1118 44 7 0 chr1 91700987 91701124 -105494308 - B1_Mm SINE Alu -1 146 9 2 1284 467 178 8 144 chr1 91701030 91701148 -105494284 - MT2B LTR ERVL -344 257 156 2 1284 315 352 21 38 chr1 91702053 91702078 -105493354 - YREP_Mm Unknown Unknown -1474 338 249 2 1284 520 285 22 7 chr1 91702078 91702216 -105493216 + ID_B1 SINE B4 82 221 -3 2 1284 315 352 21 38 chr1 91702216 91702239 -105493193 - YREP_Mm Unknown Unknown -1474 248 156 2 1284 1752 208 50 30 chr1 91702739 91703141 -105492291 + MTD LTR MaLR 10 419 0 2 1284 386 257 26 35 chr1 91704501 91704614 -105490818 - PB1D7 SINE Alu -8 112 1 2 1284 1975 214 26 24 chr1 91704890 91705306 -105490126 + MTD LTR MaLR 3 419 0 2 1284 681 319 90 18 chr1 91705648 91705980 -105489452 + MER44B DNA MER2_type 94 449 -101 2 1284 296 355 29 7 chr1 91706025 91706161 -105489271 + MER44B DNA MER2_type 411 549 -1 2 1284 374 275 11 50 chr1 91707146 91707326 -105488106 + (ATGGTG)n Simple_repeat Simple_repeat 1 173 0 2 1284 347 324 17 17 chr1 91707245 91707421 -105488011 + (TGG)n Simple_repeat Simple_repeat 3 178 0 2 1284 298 327 39 10 chr1 91707629 91707731 -105487701 + L4 LINE RTE 670 774 -1255 2 1284 1057 279 26 15 chr1 91708026 91708295 -105487137 + B4A SINE B4 6 277 -15 2 1284 253 311 14 0 chr1 91708320 91708394 -105487038 + ID_B1 SINE B4 144 218 -6 2 1284 395 281 97 68 chr1 91708961 91709210 -105486222 + MLT1C LTR MaLR 206 441 -26 2 1284 910 277 9 120 chr1 91710030 91710354 -105485078 - B4A SINE B4 -4 288 1 2 1284 26 50 0 0 chr1 91711626 91711666 -105483766 + AT_rich Low_complexity Low_complexity 1 40 0 2 1284 534 31 0 0 chr1 91711726 91711790 -105483642 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1284 354 215 122 50 chr1 91711827 91712008 -105483424 - L1MC3 LINE L1 -145 7640 7447 2 1284 230 276 48 48 chr1 91712248 91712351 -105483081 - L1MC3 LINE L1 -651 7134 7032 2 1284 1363 64 36 31 chr1 91712579 91712772 -105482660 + B2_Mm2 SINE B2 2 195 0 2 1284 204 326 0 23 chr1 91713896 91713984 -105481448 + GA-rich Low_complexity Low_complexity 4 89 0 2 1284 1303 257 42 81 chr1 91716661 91717046 -105478386 + MTEb LTR MaLR 1 370 -9 2 1284 218 224 155 0 chr1 91717592 91717650 -105477782 + PB1D10 SINE Alu 46 112 -5 2 1284 288 0 0 0 chr1 91718327 91718359 -105477073 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1284 1198 50 0 0 chr1 91718791 91718932 -105476500 + B1_Mus1 SINE Alu 2 142 -6 2 1284 339 78 0 0 chr1 91719503 91719554 -105475878 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1284 267 241 0 0 chr1 91719574 91719715 -105475717 + (TCTG)n Simple_repeat Simple_repeat 4 144 0 2 1284 220 209 0 0 chr1 91720349 91720392 -105475040 + T-rich Low_complexity Low_complexity 2 44 0 2 1284 3362 88 16 45 chr1 91721971 91722460 -105472972 - MT2C_Mm LTR ERVL 0 475 1 2 1284 240 35 0 0 chr1 91723028 91723057 -105472375 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1284 266 222 153 0 chr1 91723533 91723605 -105471827 - MIRb SINE MIR -63 205 123 2 1284 504 0 0 0 chr1 91723657 91723713 -105471719 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1284 787 203 48 27 chr1 91724687 91724874 -105470558 - ORR1D1 LTR MaLR -25 349 159 2 1284 461 84 14 0 chr1 91724956 91725027 -105470405 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 1284 225 0 0 0 chr1 91725267 91725292 -105470140 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1284 1164 58 0 0 chr1 91725292 91725430 -105470002 - B1_Mus1 SINE Alu -10 138 1 2 1284 229 246 106 15 chr1 91727232 91727298 -105468134 + B1_Mus1 SINE Alu 6 77 -71 2 1284 264 167 0 0 chr1 91729946 91729994 -105465438 + (CGG)n Simple_repeat Simple_repeat 1 48 0 2 1284 342 0 0 0 chr1 91732802 91732840 -105462592 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1284 1102 155 90 19 chr1 91733442 91733653 -105461779 - URR1A DNA MER1_type 0 226 1 2 1284 22 0 0 0 chr1 91733742 91733764 -105461668 + AT_rich Low_complexity Low_complexity 1 22 0 2 1284 22 0 0 0 chr1 91735602 91735624 -105459808 + AT_rich Low_complexity Low_complexity 1 22 0 2 1284 189 0 0 0 chr1 91736492 91736513 -105458919 + (G)n Simple_repeat Simple_repeat 1 21 0 2 1284 804 232 220 50 chr1 91738224 91738524 -105456908 - ORR1E LTR MaLR -28 351 1 2 1284 313 331 0 14 chr1 91742620 91742764 -105452668 + (CATA)n Simple_repeat Simple_repeat 3 144 0 2 1284 180 111 0 0 chr1 91744805 91744832 -105450600 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1284 221 357 129 23 chr1 91747854 91747986 -105447446 + MER5A DNA MER1_type 24 169 -20 2 1284 772 221 0 20 chr1 91748454 91748606 -105446826 - B1_Mur3 SINE Alu 0 149 1 2 1284 844 79 216 0 chr1 91748636 91748775 -105446657 + B2_Mm2 SINE B2 1 169 -26 2 1284 751 259 5 57 chr1 91748794 91749003 -105446429 + B3A SINE B2 1 198 0 2 1284 827 252 94 88 chr1 91749234 91749608 -105445824 - MTEa LTR MaLR 0 379 4 2 1284 301 250 97 0 chr1 91749778 91749850 -105445582 - B4A SINE B4 -2 290 212 2 1284 592 267 89 59 chr1 91749851 91750054 -105445378 - B3A SINE B2 -7 209 1 2 1284 1033 252 16 16 chr1 91750054 91750285 -105445147 - B4A SINE B4 -60 232 2 2 1284 468 0 0 0 chr1 91750296 91750348 -105445084 + (GGTTG)n Simple_repeat Simple_repeat 2 53 0 2 160 774 171 47 0 chr1 91750348 91750477 -105444955 - B1_Mur3 SINE Alu -8 141 7 2 1285 297 0 0 0 chr1 91750758 91750791 -105444641 + (GGATG)n Simple_repeat Simple_repeat 4 36 0 2 1285 830 233 101 0 chr1 91751143 91751267 -105444165 + B3 SINE B2 3 141 -75 2 1285 207 0 0 0 chr1 91751267 91751290 -105444142 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2 1285 830 233 101 0 chr1 91751290 91751354 -105444078 + B3 SINE B2 142 209 -7 2 1285 588 259 0 0 chr1 91752304 91752420 -105443012 - RSINE1 SINE B4 -21 144 29 2 1285 223 325 78 23 chr1 91752910 91753039 -105442393 + MIR SINE MIR 17 152 -110 2 1285 949 237 14 0 chr1 91753261 91753468 -105441964 + B3 SINE B2 2 211 -5 2 1285 319 247 0 23 chr1 91753473 91753560 -105441872 + L1MB7 LINE L1 5655 5739 -439 2 1285 279 0 0 0 chr1 91753925 91753956 -105441476 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1285 1240 41 0 7 chr1 91753956 91754103 -105441329 - B1_Mm SINE Alu 0 147 2 2 1285 274 308 102 118 chr1 91754111 91754424 -105441008 + MTE2a LTR MaLR 10 317 -62 2 1285 712 238 49 0 chr1 91754934 91755077 -105440355 + RSINE1 SINE B4 16 165 0 2 1285 299 250 147 9 chr1 91755080 91755189 -105440243 - MER33 DNA MER1_type -166 158 35 2 1285 572 323 56 7 chr1 91756655 91756939 -105438493 + L1MB7 LINE L1 5878 6175 -9 2 1285 222 232 18 0 chr1 91757359 91757415 -105438017 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1285 235 253 93 35 chr1 91758016 91758102 -105437330 + PB1D10 SINE Alu 1 91 -26 2 1285 1009 228 24 0 chr1 91758174 91758380 -105437052 + B3 SINE B2 4 214 -2 2 1285 196 100 24 24 chr1 91758953 91758994 -105436438 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 2 1285 226 231 0 19 chr1 91759887 91759940 -105435492 - LTR40b LTR ERVL -5 457 406 2 1285 993 253 32 29 chr1 91760129 91760410 -105435022 - B4 SINE B4 -7 285 4 2 1285 447 318 162 0 chr1 91761034 91761207 -105434225 - MLT1D LTR MaLR -303 202 2 2 1285 202 371 29 0 chr1 91761590 91761660 -105433772 + L2b LINE L2 3228 3299 -76 2 1285 323 333 12 0 chr1 91763232 91763316 -105432116 - RSINE1 SINE B4 -57 108 24 2 1285 601 193 140 0 chr1 91763356 91763470 -105431962 - B1_Mur2 SINE Alu -18 131 2 2 1285 246 32 0 0 chr1 91763580 91763611 -105431821 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1285 1102 112 0 11 chr1 91763612 91763792 -105431640 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2 1285 1212 68 0 0 chr1 91763838 91763985 -105431447 + B1_Mus1 SINE Alu 2 148 0 2 1285 909 210 52 38 chr1 91764077 91764290 -105431142 - B3 SINE B2 0 216 1 2 1285 741 272 6 0 chr1 91765260 91765422 -105430010 + RSINE1 SINE B4 3 165 0 2 1285 1070 105 81 17 chr1 91765455 91765629 -105429803 - B2_Mm2 SINE B2 -10 185 1 2 1285 23 33 0 0 chr1 91766616 91766646 -105428786 + AT_rich Low_complexity Low_complexity 1 30 0 2 1285 1235 35 0 0 chr1 91766688 91766832 -105428600 - B1_Mus1 SINE Alu 0 148 5 2 1285 304 245 103 31 chr1 91766884 91766981 -105428451 + PB1D10 SINE Alu 3 106 -11 2 1285 1021 216 70 52 chr1 91770832 91771157 -105424275 + ORR1D1 LTR MaLR 1 355 -4 2 1285 740 326 19 37 chr1 91771189 91771443 -105423989 + ID_B1 SINE B4 12 261 -31 2 1285 299 274 9 104 chr1 91771576 91771682 -105423750 - B3 SINE B2 -14 202 107 2 1285 810 161 20 40 chr1 91771720 91771869 -105423563 + B1_Mus1 SINE Alu 2 147 -1 2 1285 456 35 0 0 chr1 91772585 91772643 -105422789 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1285 579 217 133 0 chr1 91772670 91772813 -105422619 - B4A SINE B4 -128 164 3 2 1285 246 62 0 0 chr1 91775497 91775529 -105419903 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1285 434 217 76 0 chr1 91775542 91775634 -105419798 - B1F SINE Alu -44 105 7 2 1285 291 300 88 59 chr1 91775818 91775988 -105419444 - MLT1A1 LTR MaLR -38 370 196 3 1285 23 0 0 0 chr1 91777234 91777257 -105418175 + AT_rich Low_complexity Low_complexity 1 23 0 3 1285 560 277 83 6 chr1 91777823 91777896 -105417536 + ID SINE ID 3 87 -137 3 1285 466 213 83 4 chr1 91777896 91778031 -105417401 + PB1D10 SINE Alu 1 143 -6 3 1285 411 21 0 0 chr1 91778233 91778281 -105417151 + (TTGG)n Simple_repeat Simple_repeat 3 50 0 3 1285 2237 153 22 97 chr1 91779415 91779727 -105415705 - MTC LTR MaLR 0 421 121 3 1285 1255 41 0 0 chr1 91779727 91779873 -105415559 + B1_Mus2 SINE Alu 2 147 0 3 1285 2237 153 22 97 chr1 91779873 91780015 -105415417 - MTC LTR MaLR -301 120 1 3 1285 186 71 0 0 chr1 91780349 91780377 -105415055 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 3 1285 195 42 0 0 chr1 91782899 91782923 -105412509 + (CCTA)n Simple_repeat Simple_repeat 2 25 0 3 1285 611 244 0 8 chr1 91783065 91783193 -105412239 - B1_Mur1 SINE Alu -21 128 2 3 1285 321 239 127 80 chr1 91783193 91783221 -105412211 - MT2B LTR ERVL -445 156 122 3 1285 304 389 32 6 chr1 91784852 91785010 -105410422 - RSINE1 SINE B4 0 165 4 3 1285 186 43 0 0 chr1 91786304 91786327 -105409105 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1285 231 36 0 0 chr1 91788756 91788784 -105406648 + (CACG)n Simple_repeat Simple_repeat 4 31 0 3 1285 430 46 31 0 chr1 91790342 91790407 -105405025 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1285 25 0 0 0 chr1 91791409 91791434 -105403998 + AT_rich Low_complexity Low_complexity 1 25 0 3 1285 331 220 0 20 chr1 91792255 91792357 -105403075 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 1285 335 234 0 0 chr1 91793207 91793271 -105402161 - ID4 SINE ID -13 70 7 3 1285 540 184 0 27 chr1 91793276 91793460 -105401972 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1285 362 281 78 95 chr1 91793473 91793756 -105401676 - B4 SINE B4 -13 279 2 3 1285 180 214 34 51 chr1 91793926 91793985 -105401447 + L3 LINE CR1 1394 1451 -3038 3 1285 476 320 96 0 chr1 91794225 91794422 -105401010 + ID_B1 SINE B4 1 216 -8 3 1285 1486 49 37 26 chr1 91794473 91794662 -105400770 + B2_Mm2 SINE B2 2 192 -3 3 1285 593 138 0 52 chr1 91794718 91794833 -105400599 + B1_Mur3 SINE Alu 35 143 -6 3 1285 180 280 117 17 chr1 91795526 91795646 -105399786 + L2b LINE L2 3030 3161 -214 3 1285 1363 132 27 14 chr1 91796164 91796387 -105399045 - URR1A DNA MER1_type 0 226 1 3 1285 234 342 14 14 chr1 91797023 91797097 -105398335 - ID4_ SINE ID -8 75 2 3 1285 475 299 33 46 chr1 91797242 91797393 -105398039 - RSINE1 SINE B4 -15 150 2 3 1285 731 161 7 67 chr1 91797567 91797739 -105397693 + B3 SINE B2 9 174 -19 3 1285 951 234 138 164 chr1 91797855 91797953 -105397479 - ORR1D1 LTR MaLR 0 374 245 3 1285 255 103 0 0 chr1 91797953 91797992 -105397440 + (CAGG)n Simple_repeat Simple_repeat 3 41 0 3 1285 951 234 138 164 chr1 91797992 91798277 -105397155 - ORR1D1 LTR MaLR -130 244 3 3 1285 1103 177 32 54 chr1 91798297 91798518 -105396914 - B3 SINE B2 0 216 1 3 1285 637 196 6 106 chr1 91798550 91798566 -105396866 - B1_Mm SINE Alu 0 147 135 3 1285 207 0 0 0 chr1 91798566 91798589 -105396843 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1285 637 196 6 106 chr1 91798589 91798732 -105396700 - B1_Mm SINE Alu -13 134 4 3 1285 341 306 62 39 chr1 91799445 91799574 -105395858 + RSINE1 SINE B4 1 132 -33 3 1285 423 0 0 0 chr1 91799580 91799627 -105395805 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1285 1696 31 0 0 chr1 91800257 91800450 -105394982 - B2_Mm1t SINE B2 0 193 1 3 1285 447 254 18 164 chr1 91801665 91801830 -105393602 + ID_B1 SINE B4 84 224 0 3 1285 254 321 98 98 chr1 91802536 91802874 -105392558 - ORR1D2 LTR MaLR -27 343 6 3 1285 1366 206 146 0 chr1 91802977 91803292 -105392140 - ORR1D1 LTR MaLR -13 361 1 3 1285 990 214 82 0 chr1 91803417 91803613 -105391819 - B3 SINE B2 -3 213 2 3 1285 835 289 49 15 chr1 91803746 91804013 -105391419 - B4A SINE B4 -4 288 13 3 1285 531 0 0 0 chr1 91804014 91804073 -105391359 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1285 225 0 0 0 chr1 91804073 91804097 -105391335 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1285 826 222 7 0 chr1 91804101 91804254 -105391178 - B3A SINE B2 -37 161 8 3 1285 709 241 79 11 chr1 91804774 91804963 -105390469 + MTD LTR MaLR 1 202 -217 3 1285 231 231 14 58 chr1 91804982 91805051 -105390381 + MTD LTR MaLR 314 379 0 3 1285 274 200 30 15 chr1 91805738 91805804 -105389628 + RSINE1 SINE B4 3 69 -96 3 1285 408 202 176 8 chr1 91805935 91806060 -105389372 + ID_B1 SINE B4 36 181 -43 3 1285 328 277 66 66 chr1 91806463 91806614 -105388818 + RSINE1 SINE B4 11 161 -4 3 1285 250 276 69 0 chr1 91806685 91806772 -105388660 - Charlie2b DNA MER1_type -100 2682 2590 3 1285 211 300 22 11 chr1 91806914 91807005 -105388427 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 3 1285 377 242 0 0 chr1 91807012 91807078 -105388354 - ID4_ SINE ID -13 70 5 3 1285 228 135 0 0 chr1 91807126 91807163 -105388269 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1285 429 252 39 149 chr1 91807171 91807325 -105388107 - B1F SINE Alu -7 142 6 3 1285 801 227 6 0 chr1 91807510 91807673 -105387759 - B3A SINE B2 -31 167 4 3 1285 2202 163 116 25 chr1 91807709 91807858 -105387574 + RMER15 LTR ERVL 88 259 -316 3 1285 1047 162 139 15 chr1 91807858 91808059 -105387373 + URR1A DNA MER1_type 1 226 0 3 1285 2202 163 116 25 chr1 91808059 91808356 -105387076 + RMER15 LTR ERVL 260 575 0 3 1285 444 212 167 31 chr1 91808625 91808769 -105386663 + ID_B1 SINE B4 66 225 -67 3 1285 970 265 192 12 chr1 91808864 91809280 -105386152 + Lx8 LINE L1 6818 7308 -165 3 1285 21 0 0 0 chr1 91809422 91809443 -105385989 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 306 0 0 0 chr1 91810185 91810219 -105385213 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1285 189 0 0 0 chr1 91810268 91810289 -105385143 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1285 234 330 61 46 chr1 91810441 91810638 -105384794 - L1M5 LINE L1 -748 5492 5293 3 1285 755 137 22 15 chr1 91810667 91810821 -105384611 - B1_Mur3 SINE Alu -1 149 1 3 1285 280 373 0 18 chr1 91810899 91811011 -105384421 + B1F SINE Alu 2 111 -38 3 1285 7415 71 7 3 chr1 91811059 91812478 -105382954 + L1_Mus1 LINE L1 5145 6567 0 3 1285 868 205 0 20 chr1 91812495 91812644 -105382788 + B1_Mur2 SINE Alu 1 146 -3 3 1285 1575 38 22 0 chr1 91812709 91812894 -105382538 + B2_Mm1a SINE B2 2 190 -3 3 1285 531 195 259 35 chr1 91813228 91813398 -105382034 - B3 SINE B2 -6 210 3 3 1285 804 168 191 9 chr1 91813447 91813579 -105381853 - Lx9 LINE L1 -8 7636 7477 3 1285 219 114 0 0 chr1 91813579 91813614 -105381818 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1285 804 168 191 9 chr1 91813614 91813691 -105381741 - Lx9 LINE L1 -168 7476 7389 3 1285 655 117 15 124 chr1 91814399 91814536 -105380896 - B1_Mus1 SINE Alu -13 135 14 3 1285 715 155 372 0 chr1 91814536 91814684 -105380748 - B3 SINE B2 -12 204 2 3 1285 1161 186 26 35 chr1 91815112 91815340 -105380092 - URR1A DNA MER1_type 0 226 1 3 1285 479 219 17 9 chr1 91815435 91815550 -105379882 - B1_Mur1 SINE Alu -11 138 23 3 1285 1562 134 28 0 chr1 91815554 91815807 -105379625 + ORR1B2 LTR MaLR 108 367 0 3 1285 384 22 0 0 chr1 91816379 91816424 -105379008 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1285 300 181 36 0 chr1 91817541 91817624 -105377808 + CT-rich Low_complexity Low_complexity 2 87 0 3 1285 23 0 0 0 chr1 91819776 91819799 -105375633 + GC_rich Low_complexity Low_complexity 1 23 0 3 1285 279 0 0 0 chr1 91826254 91826285 -105369147 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1285 486 0 0 0 chr1 91826285 91826338 -105369094 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1285 405 0 0 0 chr1 91826499 91826544 -105368888 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1285 224 293 0 0 chr1 91827103 91827178 -105368254 + (CGG)n Simple_repeat Simple_repeat 2 76 0 3 1285 212 154 0 0 chr1 91827653 91827692 -105367740 + (TCCG)n Simple_repeat Simple_repeat 3 41 0 3 1285 207 188 0 0 chr1 91830277 91830325 -105365107 + A-rich Low_complexity Low_complexity 2 49 0 3 1285 276 30 0 0 chr1 91831887 91831920 -105363512 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 1285 244 157 77 19 chr1 91833502 91833554 -105361878 + PB1D10 SINE Alu 22 76 -41 3 1285 540 81 0 0 chr1 91834979 91835053 -105360379 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 3 1285 732 190 171 16 chr1 91835323 91835510 -105359922 - B3 SINE B2 0 216 1 3 1285 370 291 94 0 chr1 91835629 91835746 -105359686 - RSINE1 SINE B4 -35 130 3 3 1285 1139 75 0 13 chr1 91835766 91835915 -105359517 - B1_Mm SINE Alu 0 147 1 3 1285 796 101 8 8 chr1 91837303 91837433 -105357999 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 3 1285 640 234 114 23 chr1 91840273 91840448 -105354984 - B3A SINE B2 0 198 8 3 1285 605 269 48 32 chr1 91841235 91841423 -105354009 + B3A SINE B2 1 191 -7 3 1285 324 70 0 0 chr1 91841542 91841585 -105353847 + (TAA)n Simple_repeat Simple_repeat 3 45 0 3 1285 264 167 0 0 chr1 91841731 91841779 -105353653 + CT-rich Low_complexity Low_complexity 2 49 0 3 1285 1199 161 47 0 chr1 91842315 91842526 -105352906 - URR1B DNA MER1_type -4 221 1 3 1285 1209 253 108 20 chr1 91842838 91843144 -105352288 + MTEa LTR MaLR 33 365 -14 3 1285 356 179 0 29 chr1 91843171 91843240 -105352192 + ORR1B1 LTR MaLR 1 67 -327 3 1285 1354 183 154 42 chr1 91843240 91843380 -105352052 - RMER16 LTR ERVK 0 533 403 3 1285 1529 21 26 21 chr1 91843380 91843571 -105351861 - B2_Mm1t SINE B2 0 193 2 4 1285 1354 183 154 42 chr1 91843571 91843761 -105351671 - RMER16 LTR ERVK -131 402 166 3 1285 1744 159 0 98 chr1 91843768 91844096 -105351336 + ORR1B1 LTR MaLR 99 394 0 3 1285 256 71 6 0 chr1 91844892 91844938 -105350494 + B3A SINE B2 1 47 -146 4 1285 2585 129 0 9 chr1 91844939 91845361 -105350071 - L1_Mm LINE L1 -540 5343 4926 4 1285 7412 89 7 9 chr1 91845354 91846552 -105348880 + L1_Mus3 LINE L1 5442 6635 -3 4 1285 984 85 7 21 chr1 91846552 91846685 -105348747 + B2_Mm2 SINE B2 27 158 -37 4 1285 288 0 0 0 chr1 91846685 91846717 -105348715 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 4 1285 253 257 84 19 chr1 91847224 91847331 -105348101 + BC1_Mm scRNA scRNA 14 127 -25 4 1285 4367 19 0 0 chr1 91847382 91847864 -105347568 + LTRIS_Mm LTR ERV1 1 482 0 4 1285 700 285 85 24 chr1 91847912 91848207 -105347225 - MER74A LTR ERVL -215 343 31 4 1285 368 118 15 0 chr1 91848758 91848826 -105346606 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1285 309 19 75 0 chr1 91848831 91848884 -105346548 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 4 1285 718 228 131 16 chr1 91848888 91849071 -105346361 - B3 SINE B2 0 216 13 4 1285 685 310 82 16 chr1 91850105 91850410 -105345022 - MER2 DNA MER2_type -5 340 16 4 1285 2768 134 7 2 chr1 91850468 91850873 -105344559 + MTB_Mm LTR MaLR 1 407 0 4 1285 842 142 0 124 chr1 91851658 91851827 -105343605 + B1_Mur2 SINE Alu 1 148 -1 4 1285 409 269 174 39 chr1 91851843 91852021 -105343411 - B3 SINE B2 -12 204 3 4 1285 204 179 0 0 chr1 91852205 91852244 -105343188 + CT-rich Low_complexity Low_complexity 3 41 0 4 1285 1416 62 23 0 chr1 91852248 91852425 -105343007 - B2_Mm2 SINE B2 -14 181 1 4 1285 831 187 228 0 chr1 91852449 91852620 -105342812 - B3 SINE B2 -6 210 1 4 1285 240 331 86 59 chr1 91853834 91854020 -105341412 + L2a LINE L2 2948 3138 -288 4 1285 465 284 51 13 chr1 91854322 91854479 -105340953 - RSINE1 SINE B4 0 165 3 4 1285 237 254 246 0 chr1 91854485 91854507 -105340925 - B4A SINE B4 -46 246 86 4 1285 451 290 19 0 chr1 91854507 91854614 -105340818 - PB1D10 SINE Alu -8 109 1 4 1285 254 302 17 86 chr1 91854614 91854646 -105340786 - MT2B2 LTR ERVL -424 160 137 4 1285 333 0 0 0 chr1 91854675 91854712 -105340720 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1285 288 0 0 0 chr1 91854751 91854783 -105340649 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1285 210 379 36 57 chr1 91854900 91855040 -105340392 + L2a LINE L2 3237 3373 -2 4 1285 247 235 35 0 chr1 91855085 91855170 -105340262 - L1M6 LINE L1 -4704 1792 1705 4 1285 677 221 118 26 chr1 91855318 91855513 -105339919 + ID_B1 SINE B4 5 217 -7 4 1285 267 296 101 59 chr1 91855519 91855806 -105339626 - L1M6 LINE L1 -4822 1674 1376 4 1285 764 143 345 0 chr1 91855832 91856000 -105339432 + URR1A DNA MER1_type 1 226 0 4 1285 247 315 111 117 chr1 91856083 91856407 -105339025 - LTR33A LTR ERVL -197 323 2 4 1285 726 12 0 0 chr1 91856575 91856658 -105338774 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 4 1285 850 127 34 11 chr1 91856660 91856835 -105338597 + CT-rich Low_complexity Low_complexity 2 180 0 4 1285 276 30 0 0 chr1 91856835 91856868 -105338564 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 4 1285 377 322 26 73 chr1 91856970 91857161 -105338271 - B4A SINE B4 -44 248 67 4 1285 634 252 0 33 chr1 91857635 91857787 -105337645 - RSINE1 SINE B4 -8 157 11 4 1285 1825 150 16 47 chr1 91857948 91858371 -105337061 + RMER17C LTR ERVK 29 434 -375 4 1285 729 0 0 0 chr1 91858590 91858671 -105336761 + (CAAAC)n Simple_repeat Simple_repeat 2 82 0 4 1285 1270 256 54 54 chr1 91859887 91860258 -105335174 + MTE2b LTR MaLR 1 371 -8 4 1285 498 244 68 68 chr1 91860448 91860624 -105334808 - B3A SINE B2 0 198 23 4 1285 459 0 0 0 chr1 91862178 91862229 -105333203 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1285 369 239 0 0 chr1 91862231 91862298 -105333134 - RSINE1 SINE B4 -14 151 85 4 1285 324 70 0 0 chr1 91862608 91862651 -105332781 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1285 434 267 10 19 chr1 91862821 91862924 -105332508 - B4 SINE B4 -1 291 190 4 1285 532 288 0 0 chr1 91862932 91863050 -105332382 + MT2A LTR ERVL 2 119 -414 4 1285 831 46 0 0 chr1 91863062 91863170 -105332262 + B1_Mm SINE Alu 40 147 0 4 1285 189 0 0 0 chr1 91863170 91863191 -105332241 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1285 1077 189 74 21 chr1 91863191 91863434 -105331998 + MT2A LTR ERVL 109 364 -169 4 1285 684 158 6 41 chr1 91863471 91863643 -105331789 + (TA)n Simple_repeat Simple_repeat 1 166 0 4 1285 266 191 0 0 chr1 91863643 91863685 -105331747 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1285 1027 164 138 0 chr1 91863687 91863882 -105331550 + URR1A DNA MER1_type 3 224 -2 4 1285 504 253 193 0 chr1 91863908 91864074 -105331358 - B4A SINE B4 -94 198 1 4 1285 244 314 27 62 chr1 91864465 91864577 -105330855 - MARNA DNA Mariner -399 187 80 4 1285 186 363 23 39 chr1 91867393 91867522 -105327910 + L2c LINE L2 3258 3384 -3 4 1285 1037 173 88 5 chr1 91868834 91869026 -105326406 + B3 SINE B2 4 211 -5 4 1285 565 211 8 39 chr1 91869033 91869161 -105326271 + ORR1E LTR MaLR 16 139 -220 4 1285 767 310 41 41 chr1 91869136 91869402 -105326030 - B4A SINE B4 -20 272 7 4 1285 3223 219 61 46 chr1 91869415 91869501 -105325931 + Lx7 LINE L1 6641 6707 -989 4 1285 418 103 0 0 chr1 91869501 91869569 -105325863 - Lx2 LINE L1 0 6997 6930 4 1285 219 36 0 0 chr1 91869572 91869600 -105325832 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 4 1285 3223 219 61 46 chr1 91869600 91870257 -105325175 + Lx7 LINE L1 6708 7400 -296 4 1285 1129 94 71 16 chr1 91870257 91870440 -105324992 - B2_Mm2 SINE B2 -2 193 1 4 1285 3223 219 61 46 chr1 91870440 91870554 -105324878 + Lx7 LINE L1 7401 7516 -180 4 1285 279 0 0 0 chr1 91870557 91870588 -105324844 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1285 183 139 0 0 chr1 91870787 91870823 -105324609 + (G)n Simple_repeat Simple_repeat 1 36 0 4 1285 2863 68 49 10 chr1 91871699 91872084 -105323348 + MTB LTR MaLR 1 400 0 4 1285 193 146 0 40 chr1 91872166 91872216 -105323216 + C-rich Low_complexity Low_complexity 3 50 0 4 1285 473 315 180 38 chr1 91872528 91872954 -105322478 - L1ME2z LINE L1 -589 5855 5370 4 1285 1792 181 80 49 chr1 91873016 91873405 -105322027 + MTD LTR MaLR 5 405 -14 4 1285 838 181 7 26 chr1 91873412 91873565 -105321867 + B1_Mur4 SINE Alu 1 150 0 4 1285 203 185 48 24 chr1 91873565 91873640 -105321792 + A-rich Low_complexity Low_complexity 13 90 0 4 1285 220 289 19 23 chr1 91873890 91874023 -105321409 + MIRc SINE MIR 52 185 -91 4 1285 749 305 39 81 chr1 91874317 91874677 -105320755 + MER2 DNA MER2_type 1 345 0 4 1285 448 270 54 7 chr1 91876181 91876330 -105319102 - L1MD3 LINE L1 -5 7990 7835 4 1285 284 184 0 0 chr1 91876422 91876471 -105318961 - L1MD3 LINE L1 -215 7780 7732 4 1285 357 295 88 92 chr1 91876779 91877018 -105318414 + MTEb LTR MaLR 119 356 -23 4 1285 256 213 25 51 chr1 91877205 91877284 -105318148 + GA-rich Low_complexity Low_complexity 6 82 0 4 1285 540 307 85 23 chr1 91877286 91877676 -105317756 + L1MEc LINE L1 1646 2059 -4341 4 1285 3654 96 26 19 chr1 91877751 91878281 -105317151 + MT2B2 LTR ERVL 1 534 -50 4 1285 308 267 149 30 chr1 91878340 91878541 -105316891 + L1MEc LINE L1 2197 2421 -3979 4 1285 1348 85 10 41 chr1 91878543 91878739 -105316693 + B2_Mm2 SINE B2 2 191 -4 4 1285 642 186 17 17 chr1 91878753 91878868 -105316564 + B1_Mus2 SINE Alu 33 147 0 4 1285 430 306 38 61 chr1 91878890 91879022 -105316410 + ID_B1 SINE B4 80 208 -16 4 1285 623 348 65 93 chr1 91879097 91879298 -105316134 + MLT1F2 LTR MaLR 67 254 -306 4 1285 823 264 106 40 chr1 91879298 91879677 -105315755 + MLT1A1 LTR MaLR 2 405 -3 4 1285 623 348 65 93 chr1 91879677 91879918 -105315514 + MLT1F2 LTR MaLR 255 497 -63 4 1285 869 250 29 19 chr1 91879935 91880143 -105315289 - B3 SINE B2 -4 212 3 4 1285 225 0 0 0 chr1 91880170 91880195 -105315237 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 4 1285 1281 51 0 0 chr1 91880195 91880353 -105315079 - B2_Mm2 SINE B2 -36 159 2 4 1285 46 45 0 0 chr1 91880439 91880506 -105314926 + AT_rich Low_complexity Low_complexity 1 67 0 4 1285 597 185 109 60 chr1 91880506 91880707 -105314725 - Lx9 LINE L1 -15 7629 7419 4 1285 303 281 110 0 chr1 91880792 91880874 -105314558 + B1_Mur1 SINE Alu 59 149 0 4 1285 330 272 116 58 chr1 91880808 91880929 -105314503 + B4 SINE B4 165 292 0 4 1285 430 256 86 18 chr1 91880930 91881005 -105314427 - Lx9 LINE L1 -136 7508 7421 4 1285 468 0 0 0 chr1 91881005 91881057 -105314375 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 4 1285 430 256 86 18 chr1 91881057 91881144 -105314288 - Lx9 LINE L1 -224 7420 7335 4 1285 703 231 34 23 chr1 91881171 91881348 -105314084 + B3 SINE B2 23 201 -15 4 160 313 268 129 7 chr1 91881430 91881569 -105313863 + L1MEc LINE L1 2803 2958 -3361 4 1286 420 252 112 9 chr1 91881582 91881698 -105313734 + B1_Mur1 SINE Alu 22 149 0 4 1286 272 287 155 88 chr1 91881746 91882488 -105312944 + L1MEc LINE L1 3167 3942 -2377 4 1286 228 67 0 0 chr1 91882488 91882518 -105312914 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 4 1286 272 287 181 89 chr1 91882518 91882641 -105312791 + L1MEc LINE L1 3943 4042 -2277 4 1286 895 164 15 0 chr1 91882641 91882775 -105312657 + B1_Mur4 SINE Alu 2 137 -13 4 1286 297 0 0 0 chr1 91882775 91882808 -105312624 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 1286 272 287 181 89 chr1 91882808 91883157 -105312275 + L1MEc LINE L1 4043 4463 -1856 4 1286 24 0 0 0 chr1 91883189 91883213 -105312219 + AT_rich Low_complexity Low_complexity 1 24 0 4 1286 729 245 86 5 chr1 91883318 91883515 -105311917 - MTD LTR MaLR -14 405 193 4 1286 221 178 22 0 chr1 91883519 91883564 -105311868 - B4 SINE B4 -245 47 2 4 1286 615 275 54 33 chr1 91883564 91883747 -105311685 - MTD LTR MaLR -209 210 24 4 1286 348 268 72 0 chr1 91883764 91883861 -105311571 + PB1D10 SINE Alu 5 108 -9 4 1286 189 171 0 0 chr1 91883879 91883914 -105311518 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1286 538 321 57 57 chr1 91883933 91884230 -105311202 + L1ME2z LINE L1 4416 4706 -1440 4 1286 387 0 0 0 chr1 91884230 91884273 -105311159 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1286 839 181 205 0 chr1 91884281 91884452 -105310980 - B3 SINE B2 -9 207 2 4 1286 538 321 57 57 chr1 91884452 91884531 -105310901 + L1ME2z LINE L1 4712 4801 -1345 4 1286 435 303 195 8 chr1 91884656 91884912 -105310520 + LTR75 LTR ERVL 172 475 -87 4 1286 207 189 0 0 chr1 91885083 91885136 -105310296 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1286 967 139 7 0 chr1 91885136 91885280 -105310152 - B1_Mus1 SINE Alu -3 145 1 5 1286 441 306 57 103 chr1 91885280 91885390 -105310042 - B4A SINE B4 -61 231 112 5 1286 300 192 39 0 chr1 91885390 91885468 -105309964 + Lx9 LINE L1 7563 7643 -1 5 1286 441 306 57 103 chr1 91885468 91885532 -105309900 - B4A SINE B4 -181 111 65 5 1286 695 128 9 0 chr1 91886005 91886114 -105309318 - PB1D9 SINE Alu 0 120 11 5 1286 255 261 0 74 chr1 91886031 91886126 -105309306 - 4.5SRNA scRNA scRNA -6 88 1 5 1286 517 324 47 22 chr1 91886398 91886758 -105308674 + L1MC LINE L1 5019 5387 -759 5 1286 303 277 148 0 chr1 91886971 91887072 -105308360 + L1ME2z LINE L1 5639 5754 -410 4 1286 263 314 14 0 chr1 91887112 91887182 -105308250 - ID4_ SINE ID -5 78 8 5 1286 329 259 68 21 chr1 91887202 91887352 -105308080 + L1ME2z LINE L1 5748 5905 -539 4 1286 22 0 0 0 chr1 91887383 91887405 -105308027 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 5897 55 0 1 chr1 91887428 91888152 -105307280 - L1Md_F2 LINE L1 -1 6581 5859 5 1286 798 141 35 21 chr1 91888153 91888298 -105307134 - B1_Mur4 SINE Alu -1 149 3 5 1286 30 0 0 0 chr1 91888993 91889023 -105306409 + GC_rich Low_complexity Low_complexity 1 30 0 5 1286 405 0 0 0 chr1 91890183 91890228 -105305204 + (TATG)n Simple_repeat Simple_repeat 3 47 0 5 1286 204 182 0 0 chr1 91890460 91890504 -105304928 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1286 21 0 0 0 chr1 91891003 91891024 -105304408 + AT_rich Low_complexity Low_complexity 1 21 0 5 1286 1085 268 4 4 chr1 91891292 91891517 -105303915 + B4 SINE B4 2 226 -66 5 1286 1058 275 84 47 chr1 91893412 91893817 -105301615 + MTE-int LTR MaLR 976 1395 -185 5 1286 417 282 52 32 chr1 91893822 91893976 -105301456 + RSINE1 SINE B4 9 165 0 5 1286 894 270 11 94 chr1 91894086 91894352 -105301080 + MTEa LTR MaLR 123 366 -13 5 1286 180 0 0 0 chr1 91895085 91895105 -105300327 + (TTA)n Simple_repeat Simple_repeat 1 20 0 5 1286 401 327 39 0 chr1 91896056 91896209 -105299223 - MER5B DNA MER1_type -12 166 8 5 1286 183 190 0 94 chr1 91896876 91896940 -105298492 - L3 LINE CR1 -2037 2452 2395 5 1286 1225 234 156 3 chr1 91897926 91898247 -105297185 + ORR1D2 LTR MaLR 1 370 0 5 1286 606 242 23 8 chr1 91899428 91899557 -105295875 - RSINE1 SINE B4 -32 133 3 5 1286 380 252 307 9 chr1 91899677 91899889 -105295543 + B4A SINE B4 5 279 -13 5 1286 856 185 101 106 chr1 91899977 91900195 -105295237 + ID_B1 SINE B4 2 218 -6 5 1286 619 274 89 37 chr1 91900563 91900660 -105294772 + RLTR15 LTR ERVK 1 108 -251 5 1286 477 0 0 0 chr1 91900660 91900713 -105294719 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1286 619 274 89 37 chr1 91900713 91900941 -105294491 + RLTR15 LTR ERVK 109 342 -17 5 1286 286 264 15 90 chr1 91901531 91901664 -105293768 - Charlie10 DNA MER1_type -4 2818 2696 5 1286 747 310 30 0 chr1 91901907 91902110 -105293322 - MER58A DNA MER1_type -1 223 15 5 1286 1205 224 62 25 chr1 91902114 91902436 -105292996 - MTE2b LTR MaLR 0 379 3 5 1286 358 326 126 41 chr1 91902596 91902865 -105292567 - L1M4c LINE L1 -4985 1399 1108 5 1286 264 302 27 45 chr1 91904425 91904536 -105290896 + RMER12 LTR ERVK 746 854 -468 5 1286 636 193 284 18 chr1 91904642 91904811 -105290621 - B3 SINE B2 -2 214 1 5 1286 277 298 41 66 chr1 91905285 91905407 -105290025 - MIRb SINE MIR -83 185 67 5 1286 489 244 8 61 chr1 91906333 91906464 -105288968 + B4A SINE B4 8 131 -161 5 1286 279 215 80 38 chr1 91906910 91907006 -105288426 + MLT1A1 LTR MaLR 279 408 0 5 1286 288 0 0 0 chr1 91907228 91907260 -105288172 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1286 446 164 40 14 chr1 91907687 91907835 -105287597 + (TCTG)n Simple_repeat Simple_repeat 2 153 0 5 1286 1336 243 7 0 chr1 91908363 91908639 -105286793 + B4 SINE B4 2 279 -13 5 1286 285 29 0 0 chr1 91908745 91908779 -105286653 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1286 1153 82 0 0 chr1 91909037 91909184 -105286248 + B2_Mm2 SINE B2 2 148 -47 5 1286 1273 132 16 0 chr1 91909233 91909422 -105286010 + B2_Mm2 SINE B2 2 193 -2 5 1286 21 0 0 0 chr1 91909526 91909547 -105285885 + AT_rich Low_complexity Low_complexity 1 21 0 5 1286 880 243 5 32 chr1 91909575 91909762 -105285670 - B3A SINE B2 -16 182 1 5 1286 317 250 0 70 chr1 91910205 91910291 -105285141 - ID4_ SINE ID 0 83 4 5 1286 2787 88 0 22 chr1 91910334 91910705 -105284727 + ORR1B2 LTR MaLR 5 367 0 5 1286 1120 234 149 7 chr1 91911442 91911751 -105283681 - ORR1E LTR MaLR -6 353 1 5 1286 271 192 231 0 chr1 91911751 91911827 -105283605 - B1F1 SINE Alu -55 94 1 5 1286 352 241 46 119 chr1 91911877 91912028 -105283404 - B1_Mur2 SINE Alu 0 149 10 5 1286 706 255 6 18 chr1 91911945 91912113 -105283319 - ID_B1 SINE B4 -54 170 5 5 1286 197 159 0 22 chr1 91912825 91912870 -105282562 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1286 847 269 115 37 chr1 91912873 91912893 -105282539 - B4A SINE B4 0 292 273 5 1286 321 123 0 0 chr1 91912893 91912958 -105282474 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 5 1286 847 269 115 37 chr1 91912958 91913207 -105282225 - B4A SINE B4 -20 272 2 5 1286 408 233 18 2 chr1 91913266 91913369 -105282063 - PB1D10 SINE Alu -41 108 3 5 1286 297 333 61 0 chr1 91913277 91913391 -105282041 - ID_B1 SINE B4 -48 176 56 5 1286 299 243 94 47 chr1 91913496 91913632 -105281800 + MLT1A1 LTR MaLR 302 450 -17 5 1286 345 214 143 0 chr1 91914031 91914101 -105281331 - PB1D7 SINE Alu -2 118 39 5 1286 2331 157 34 17 chr1 91914367 91914781 -105280651 - MTC LTR MaLR 0 421 1 5 1286 376 250 0 0 chr1 91914783 91914863 -105280569 + B3 SINE B2 37 116 -100 5 1286 301 232 11 137 chr1 91915416 91915511 -105279921 + B3A SINE B2 114 196 -2 5 1286 320 322 97 32 chr1 91915694 91915848 -105279584 - LTR79 LTR ERVL -33 494 331 5 1286 642 238 107 6 chr1 91916201 91916370 -105279062 + B3A SINE B2 2 187 -11 5 1286 710 305 58 8 chr1 91916436 91916697 -105278735 + B4A SINE B4 5 278 -14 5 1286 204 125 0 0 chr1 91916704 91916736 -105278696 + (TATG)n Simple_repeat Simple_repeat 4 35 0 5 1286 2203 115 40 14 chr1 91917454 91917609 -105277823 - ORR1B1 LTR MaLR 0 394 231 5 1286 990 74 82 0 chr1 91917609 91917744 -105277688 + B1_Mm SINE Alu 1 146 -1 5 1286 468 0 0 0 chr1 91917744 91917796 -105277636 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1286 2203 115 40 14 chr1 91917796 91917992 -105277440 - ORR1B1 LTR MaLR -164 230 34 5 1286 234 267 17 0 chr1 91918324 91918384 -105277048 + L1M5 LINE L1 5729 5789 -335 5 1286 314 274 101 62 chr1 91918854 91919033 -105276399 - L1MCa LINE L1 -4200 2308 2123 5 1286 809 168 227 14 chr1 91919577 91919766 -105275666 - B3 SINE B2 0 216 11 5 1286 916 230 9 71 chr1 91919785 91920010 -105275422 - B3 SINE B2 -5 211 1 5 1286 223 359 56 37 chr1 91922007 91922169 -105273263 - L2 LINE L2 -942 2477 2313 5 1286 315 0 0 0 chr1 91922699 91922734 -105272698 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1286 476 329 36 24 chr1 91922746 91922914 -105272518 - B3A SINE B2 -20 178 9 5 1286 249 33 0 0 chr1 91923268 91923298 -105272134 + (CAGAC)n Simple_repeat Simple_repeat 1 30 0 5 1286 351 0 0 0 chr1 91923298 91923337 -105272095 + (CAGTA)n Simple_repeat Simple_repeat 1 39 0 5 1286 189 307 172 55 chr1 91923849 91923994 -105271438 + MIRb SINE MIR 3 164 -104 5 1286 239 234 127 25 chr1 91924258 91924337 -105271095 + L1MD2 LINE L1 6151 6237 -122 5 1286 198 71 0 0 chr1 91924362 91924390 -105271042 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1286 817 245 7 0 chr1 91924404 91924559 -105270873 - B3A SINE B2 -42 156 1 5 1286 186 224 0 0 chr1 91924678 91924727 -105270705 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1286 438 251 7 57 chr1 91924770 91924905 -105270527 - B4 SINE B4 0 292 104 5 1286 276 261 95 23 chr1 91924852 91924957 -105270475 - B1_Mm SINE Alu -33 116 5 5 1286 629 310 97 73 chr1 91928650 91929488 -105265944 + L1M5 LINE L1 2993 3850 -2296 5 1286 510 345 71 37 chr1 91929673 91930109 -105265323 + L1MD2 LINE L1 5681 6131 -228 5 1286 404 37 0 18 chr1 91930145 91930200 -105265232 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1286 248 189 95 0 chr1 91930330 91930404 -105265028 + L1MD2 LINE L1 6156 6236 -6 5 1286 308 322 59 8 chr1 91930404 91930523 -105264909 + L1M5 LINE L1 3840 3964 -2182 5 1286 594 281 60 90 chr1 91930628 91930757 -105264675 - B4A SINE B4 0 292 157 5 1286 464 0 0 18 chr1 91930757 91930814 -105264618 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1286 594 281 60 90 chr1 91930814 91930985 -105264447 - B4A SINE B4 -136 156 1 5 1286 355 290 131 22 chr1 91931092 91931413 -105264019 + L1M5 LINE L1 4096 4451 -1695 5 1286 422 261 99 108 chr1 91931431 91931654 -105263778 + L1MA4 LINE L1 5698 5918 -382 5 1286 447 285 80 15 chr1 91931812 91932072 -105263360 + L1M5 LINE L1 4430 4708 -1438 5 1286 466 352 85 61 chr1 91932241 91932571 -105262861 + L1M5 LINE L1 4857 5194 -952 5 1286 1460 272 18 43 chr1 91932785 91933231 -105262201 - BGLII_B LTR ERVK -3 438 4 5 1286 239 214 45 8 chr1 91933887 91934019 -105261413 + (TCTA)n Simple_repeat Simple_repeat 1 137 0 5 1286 570 130 49 12 chr1 91934051 91934215 -105261217 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 5 1286 275 281 208 6 chr1 91934341 91934509 -105260923 + MLT1J1 LTR MaLR 49 250 -194 5 1286 219 349 0 23 chr1 91935774 91935906 -105259526 + (TG)n Simple_repeat Simple_repeat 2 130 0 5 1286 258 237 11 59 chr1 91936512 91936603 -105258829 + ID4 SINE ID 24 105 -47 5 1286 210 256 158 0 chr1 91938430 91938512 -105256920 - B3A SINE B2 -103 95 1 5 1286 202 333 0 0 chr1 91939203 91939257 -105256175 + polypyrimidine Low_complexity Low_complexity 5 58 0 5 1286 368 88 18 0 chr1 91939819 91939876 -105255556 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1286 450 0 0 0 chr1 91939876 91939926 -105255506 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1286 528 222 10 0 chr1 91939926 91940025 -105255407 - B3A SINE B2 -44 154 55 5 1286 233 311 42 0 chr1 91940072 91940191 -105255241 - L1MEd LINE L1 -4564 1585 1462 5 1286 255 312 99 35 chr1 91940333 91940675 -105254757 - L1MEd LINE L1 -4866 1253 890 5 1286 313 224 13 0 chr1 91940811 91940887 -105254545 - Lx9 LINE L1 -3 7641 7565 6 1286 372 331 41 6 chr1 91940926 91941096 -105254336 - MLT1D LTR MaLR -84 421 246 6 1286 360 0 0 0 chr1 91943135 91943175 -105252257 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1286 392 307 0 49 chr1 91943349 91943603 -105251829 + G-rich Low_complexity Low_complexity 1 241 0 6 1286 263 312 6 43 chr1 91943565 91943729 -105251703 + GA-rich Low_complexity Low_complexity 2 159 0 6 1286 798 151 314 0 chr1 91944157 91944329 -105251103 - URR1A DNA MER1_type 0 226 1 6 1286 2288 107 3 59 chr1 91945025 91945382 -105250050 + ORR1A1 LTR MaLR 2 338 -8 6 1286 392 314 145 34 chr1 91945663 91945786 -105249646 - L1M4 LINE L1 -1458 4688 4556 6 1286 1782 172 130 5 chr1 91945786 91946155 -105249277 + MTD LTR MaLR 1 415 -4 6 1286 392 314 145 34 chr1 91946155 91946265 -105249167 - L1M4 LINE L1 -1591 4555 4429 6 1286 273 182 0 0 chr1 91947286 91947341 -105248091 + GA-rich Low_complexity Low_complexity 3 57 0 6 1286 219 247 154 13 chr1 91950275 91950353 -105245079 - MIRc SINE MIR -118 150 62 6 1286 1063 215 70 19 chr1 91950723 91950993 -105244439 + B4A SINE B4 1 284 -8 6 1286 309 145 0 0 chr1 91951005 91951067 -105244365 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1286 221 309 8 0 chr1 91951083 91951212 -105244220 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 1286 1367 164 0 51 chr1 91951980 91952217 -105243215 + URR1B DNA MER1_type 1 225 0 6 1286 3076 61 201 2 chr1 91954182 91954609 -105240823 + RLTR1B LTR ERV1 1 512 0 6 1286 949 125 98 25 chr1 91955812 91956027 -105239405 + ORR1C2 LTR MaLR 1 220 -150 6 1286 519 231 46 0 chr1 91956028 91956136 -105239296 - LSU-rRNA_Hsa rRNA rRNA -4705 330 218 6 1286 822 9 28 0 chr1 91957055 91957162 -105238270 + (GA)n Simple_repeat Simple_repeat 2 111 0 6 1286 755 291 66 18 chr1 91959359 91959632 -105235800 - B4A SINE B4 -2 290 5 6 1286 259 213 78 13 chr1 91960807 91960884 -105234548 - MTE2a LTR MaLR -4 375 295 6 1286 909 152 43 0 chr1 91960883 91961021 -105234411 - B1_Mur4 SINE Alu 0 150 7 6 1286 419 173 13 0 chr1 91961028 91961103 -105234329 + BC1_Mm scRNA scRNA 1 76 -76 6 1286 915 235 78 127 chr1 91961149 91961471 -105233961 - MTE2a LTR MaLR -73 306 1 6 1286 1319 27 0 0 chr1 91961504 91961651 -105233781 + B1_Mus2 SINE Alu 1 147 0 6 1286 246 215 0 0 chr1 91961803 91961933 -105233499 + (TAGA)n Simple_repeat Simple_repeat 2 131 0 6 1286 1044 289 31 38 chr1 91961934 91962225 -105233207 + B4 SINE B4 2 290 -2 6 1286 204 298 0 130 chr1 91963632 91963740 -105231692 + L2 LINE L2 2233 2326 -1093 6 1286 25 0 0 0 chr1 91963757 91963782 -105231650 + AT_rich Low_complexity Low_complexity 1 25 0 6 1286 406 232 90 10 chr1 91964242 91964342 -105231090 - PB1D10 SINE Alu -9 108 1 6 1286 378 0 0 0 chr1 91965813 91965855 -105229577 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1286 201 83 20 59 chr1 91966085 91966136 -105229296 + (GGGTG)n Simple_repeat Simple_repeat 4 52 0 6 1286 429 252 56 129 chr1 91967329 91967584 -105227848 + MTD LTR MaLR 25 298 -123 6 1286 240 233 12 141 chr1 91967735 91967820 -105227612 + BC1_Mm scRNA scRNA 31 104 -48 6 1286 390 42 0 0 chr1 91968373 91968421 -105227011 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1286 27 29 0 0 chr1 91968852 91968886 -105226546 + AT_rich Low_complexity Low_complexity 1 34 0 6 1286 669 332 97 16 chr1 91969227 91969597 -105225835 + MLT1C LTR MaLR 61 460 -7 6 1286 267 31 0 0 chr1 91969768 91969800 -105225632 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1286 548 215 170 28 chr1 91969803 91970015 -105225417 - B4 SINE B4 -20 272 31 6 1286 297 89 0 0 chr1 91970841 91970886 -105224546 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 6 1286 555 246 40 14 chr1 91970905 91971053 -105224379 - B4A SINE B4 0 292 141 6 1286 781 189 8 0 chr1 91971066 91971193 -105224239 - B1_Mur2 SINE Alu -17 132 5 6 1286 594 41 0 0 chr1 91971201 91971274 -105224158 + (TTTTG)n Simple_repeat Simple_repeat 3 75 0 6 1286 849 171 0 0 chr1 91971274 91971403 -105224029 - B1_Mur2 SINE Alu -12 137 9 6 1286 1247 97 0 6 chr1 91972485 91972648 -105222784 + B2_Mm2 SINE B2 1 163 -32 6 1286 204 40 0 0 chr1 91972648 91972673 -105222759 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 1286 1247 97 0 6 chr1 91972673 91972685 -105222747 + B2_Mm2 SINE B2 164 174 -21 6 1286 936 266 216 15 chr1 91972685 91973001 -105222431 + MTD LTR MaLR 26 419 0 6 1286 441 0 0 0 chr1 91973841 91973890 -105221542 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1286 258 105 0 0 chr1 91973890 91973927 -105221505 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1286 213 226 0 19 chr1 91973930 91973984 -105221448 + G-rich Low_complexity Low_complexity 2 54 0 6 1286 368 250 24 32 chr1 91974501 91974625 -105220807 - L1MD LINE L1 -1244 4902 4780 6 1286 547 252 90 119 chr1 91974683 91975070 -105220362 - L1M3 LINE L1 -2150 3990 3615 6 1286 1301 87 0 31 chr1 91975070 91975261 -105220171 + B2_Mm2 SINE B2 2 186 -9 6 1286 25 51 0 0 chr1 91975307 91975346 -105220086 + AT_rich Low_complexity Low_complexity 1 39 0 6 1286 2102 136 22 25 chr1 91976941 91977296 -105218136 - ORR1C1 LTR MaLR 0 378 25 6 1286 231 125 0 0 chr1 91977296 91977336 -105218096 + (TGGGGG)n Simple_repeat Simple_repeat 1 40 0 6 1286 206 204 0 0 chr1 91978166 91978178 -105217254 + polypurine Low_complexity Low_complexity 3 14 0 6 1286 1026 100 0 0 chr1 91978178 91978358 -105217074 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1286 206 204 0 0 chr1 91978358 91978394 -105217038 + GA-rich Low_complexity Low_complexity 15 50 0 6 1286 518 79 0 13 chr1 91978395 91978472 -105216960 + (GGGGA)n Simple_repeat Simple_repeat 1 76 0 6 1286 3496 249 125 30 chr1 91979252 91980020 -105215412 + Lx8 LINE L1 6231 7076 -397 6 1286 4111 81 23 26 chr1 91980020 91980589 -105214843 + RMER2 LTR ERV1 1 567 0 6 1286 3496 249 125 30 chr1 91980589 91980955 -105214477 + Lx8 LINE L1 7077 7473 0 6 1286 4427 140 5 57 chr1 91980965 91981753 -105213679 + RMER6A LTR ERVK 1 747 -9 6 1286 214 348 64 21 chr1 91981816 91981910 -105213522 - PB1D9 SINE Alu -6 114 17 6 1286 337 150 12 24 chr1 91984532 91984614 -105210818 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 6 1286 398 139 14 0 chr1 91984623 91984695 -105210737 + CT-rich Low_complexity Low_complexity 2 74 0 6 1286 361 127 14 87 chr1 91985188 91985226 -105210206 - MTD LTR MaLR -3 356 319 6 1286 201 39 0 0 chr1 91985226 91985252 -105210180 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1286 361 127 14 87 chr1 91985252 91985282 -105210150 - MTD LTR MaLR -41 318 293 6 1286 382 246 140 34 chr1 91985330 91985479 -105209953 - MTD LTR MaLR -264 155 8 6 1286 1759 197 51 43 chr1 91985479 91985851 -105209581 + MTD LTR MaLR 1 375 -44 6 1286 2045 144 116 34 chr1 91986500 91986939 -105208493 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1286 328 250 11 11 chr1 91987541 91987630 -105207802 - L1_Mur3 LINE L1 -331 5549 5461 6 1286 750 66 9 45 chr1 91987635 91987648 -105207784 - B1_Mur2 SINE Alu -1 148 140 6 1286 536 0 0 15 chr1 91987648 91987713 -105207719 + (TTA)n Simple_repeat Simple_repeat 2 65 0 6 1286 750 75 12 48 chr1 91987713 91987828 -105207604 - B1_Mur2 SINE Alu -10 139 23 6 1286 267 360 43 0 chr1 91988007 91988168 -105207264 + L1MA4 LINE L1 5771 5938 -362 6 1286 243 0 0 0 chr1 91988224 91988251 -105207181 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1286 1022 274 55 28 chr1 91988274 91988672 -105206760 - L1M2 LINE L1 -1204 4939 4531 6 1286 691 236 5 14 chr1 91989042 91989473 -105205959 + GA-rich Low_complexity Low_complexity 1 426 0 6 1286 198 0 0 0 chr1 91990504 91990526 -105204906 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1286 1811 166 86 56 chr1 91991515 91991910 -105203522 - MTB_Mm LTR MaLR 0 407 1 6 1286 1008 233 24 5 chr1 91992098 91992309 -105203123 - B3 SINE B2 0 216 2 6 1286 1119 91 0 0 chr1 91992364 91992507 -105202925 - B1_Mus2 SINE Alu 0 147 5 6 1286 617 282 20 0 chr1 91992760 91992909 -105202523 + MTEa LTR MaLR 1 152 -227 6 1286 360 0 0 0 chr1 91993925 91993965 -105201467 + (TATG)n Simple_repeat Simple_repeat 2 41 0 6 1286 831 166 21 21 chr1 91993965 91994107 -105201325 - B1_Mur3 SINE Alu -7 142 1 6 1286 272 242 0 20 chr1 91994512 91994613 -105200819 + CT-rich Low_complexity Low_complexity 2 100 0 6 1286 453 90 0 0 chr1 91994933 91995000 -105200432 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1286 1163 279 87 30 chr1 91995766 91995895 -105199537 - Lx8 LINE L1 -5 7468 7324 6 1286 261 128 0 0 chr1 91995895 91995942 -105199490 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 6 1286 1163 279 87 30 chr1 91995942 91996271 -105199161 - Lx8 LINE L1 -150 7323 6984 6 1286 1513 300 29 22 chr1 91996275 91996763 -105198669 - Lx8 LINE L1 -686 6787 6297 6 1286 217 225 0 0 chr1 91996982 91997022 -105198410 - ID4_ SINE ID -3 80 41 6 1286 501 32 0 0 chr1 91997424 91997487 -105197945 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1286 450 0 0 0 chr1 91997487 91997536 -105197896 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1286 1168 215 0 5 chr1 91997847 91998053 -105197379 + B3 SINE B2 1 205 -11 6 1286 945 238 28 28 chr1 91998107 91998319 -105197113 + ID_B1 SINE B4 2 213 -11 6 1286 437 0 19 0 chr1 91998319 91998372 -105197060 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1286 252 313 82 22 chr1 91998459 91998593 -105196839 + MER58B DNA MER1_type 192 333 -8 6 1286 24 0 0 0 chr1 91998803 91998827 -105196605 + AT_rich Low_complexity Low_complexity 1 24 0 6 1286 303 305 148 49 chr1 91999614 91999797 -105195635 - L1M5 LINE L1 -1483 4663 4463 6 1286 207 0 0 0 chr1 92000700 92000723 -105194709 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1286 597 232 31 31 chr1 92001200 92001360 -105194072 - Charlie1a DNA MER1_type -6 1449 1290 2 1286 427 278 379 27 chr1 92001361 92001617 -105193815 + Lx8 LINE L1 6525 6870 -603 3 1286 1543 209 134 54 chr1 92001620 92002009 -105193423 + MTC LTR MaLR 2 421 0 4 1286 615 285 6 1 chr1 92002011 92002193 -105193239 + Lx8 LINE L1 6870 7032 -428 3 1286 423 366 25 39 chr1 92002373 92002652 -105192780 - Charlie1a DNA MER1_type -159 1296 1022 2 1286 7418 10 0 0 chr1 92002652 92003527 -105191905 - L1Md_A LINE L1 -1116 4767 3893 5 1286 6941 8 0 0 chr1 92003522 92004324 -105191108 + L1Md_A LINE L1 4785 5586 -297 5 1286 9080 10 0 0 chr1 92004324 92005351 -105190081 + L1Md_A LINE L1 5587 6582 0 5 1286 705 250 35 18 chr1 92005614 92005785 -105189647 + MTEb LTR MaLR 20 193 -186 6 1286 339 255 20 69 chr1 92005780 92005881 -105189551 + PB1D9 SINE Alu 32 128 -20 7 1286 268 239 14 0 chr1 92005903 92005974 -105189458 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1286 510 152 0 0 chr1 92005977 92006069 -105189363 + (CCA)n Simple_repeat Simple_repeat 3 94 0 9 1286 563 87 78 0 chr1 92006069 92006184 -105189248 + Lx9 LINE L1 7519 7642 -2 1 1286 798 210 34 58 chr1 92006233 92006440 -105188992 + MTEb LTR MaLR 171 372 -7 6 1286 610 209 133 42 chr1 92006757 92006922 -105188510 - B3A SINE B2 -16 182 3 1 1286 459 0 0 0 chr1 92006935 92006986 -105188446 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1286 25 31 0 0 chr1 92007062 92007094 -105188338 + AT_rich Low_complexity Low_complexity 1 32 0 1 1286 295 205 36 0 chr1 92007804 92007887 -105187545 + CT-rich Low_complexity Low_complexity 4 89 0 1 1286 426 236 17 43 chr1 92008031 92008146 -105187286 + MLT1C LTR MaLR 9 120 -347 1 1286 317 266 87 40 chr1 92008139 92008288 -105187144 + MLT1C LTR MaLR 312 467 0 1 1286 2647 142 2 26 chr1 92008349 92008769 -105186663 - MTD LTR MaLR -9 410 1 1 1286 293 326 210 5 chr1 92009335 92009554 -105185878 + L2 LINE L2 2616 2879 -540 1 1286 282 56 0 0 chr1 92009824 92009860 -105185572 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1286 1188 64 0 0 chr1 92009864 92010005 -105185427 - B1_Mus1 SINE Alu -7 141 1 1 1286 252 22 0 62 chr1 92010112 92010160 -105185272 + (CAAAAA)n Simple_repeat Simple_repeat 5 49 0 2 1286 204 268 0 0 chr1 92010649 92010690 -105184742 + G-rich Low_complexity Low_complexity 1 41 0 2 1286 436 221 269 60 chr1 92010880 92011029 -105184403 - B4 SINE B4 0 292 113 2 1286 251 265 58 152 chr1 92011294 92011432 -105184000 + RMER10B LTR ERVL 269 393 -5 2 1286 297 229 33 88 chr1 92011433 92011524 -105183908 - B4 SINE B4 -205 87 2 2 1287 299 212 0 12 chr1 92014263 92014344 -105181088 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1287 257 247 0 10 chr1 92014398 92014496 -105180936 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1287 524 248 42 42 chr1 92014592 92014735 -105180697 - B1F1 SINE Alu -2 147 5 2 1287 294 289 65 118 chr1 92014735 92014761 -105180671 - B4 SINE B4 -69 223 64 2 1287 251 196 59 0 chr1 92014770 92014821 -105180611 + PB1D7 SINE Alu 2 55 -65 2 1287 374 242 129 102 chr1 92015001 92015148 -105180284 + RSINE1 SINE B4 9 159 -6 2 1287 1336 52 115 0 chr1 92015180 92015354 -105180078 + B2_Mm2 SINE B2 2 195 0 2 1287 1015 282 113 7 chr1 92018069 92018362 -105177070 + ORR1E LTR MaLR 1 324 -35 3 1287 555 16 0 0 chr1 92018941 92019005 -105176427 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 1287 259 286 58 87 chr1 92019011 92019149 -105176283 - MIR SINE MIR -95 167 34 3 1287 855 279 19 12 chr1 92019418 92019725 -105175707 + ORR1E LTR MaLR 7 372 -7 3 1287 562 274 109 27 chr1 92019833 92020054 -105175378 + MTD LTR MaLR 2 240 -179 3 1287 510 211 28 37 chr1 92020093 92020201 -105175231 - PB1D9 SINE Alu -8 112 6 3 1287 637 285 29 17 chr1 92020197 92020372 -105175060 + MTE2a LTR MaLR 189 365 -14 3 1287 276 254 0 78 chr1 92020741 92020818 -105174614 - MER3 DNA MER1_type -1 208 138 3 1287 1079 94 7 0 chr1 92020921 92021219 -105174213 + (CACAG)n Simple_repeat Simple_repeat 1 299 0 3 1287 354 303 29 128 chr1 92021224 92021428 -105174004 - Tigger5 DNA MER2_type -2201 205 22 3 1287 381 234 43 6 chr1 92022483 92022646 -105172786 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1287 360 0 0 0 chr1 92022650 92022690 -105172742 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 4 1287 403 302 19 0 chr1 92022774 92022880 -105172552 + ID_B1 SINE B4 69 176 -48 4 1287 554 213 0 27 chr1 92022794 92022905 -105172527 + PB1D10 SINE Alu 10 117 0 4 1287 301 312 0 67 chr1 92023122 92023256 -105172176 + L1ME4a LINE L1 5926 6050 -74 4 1287 527 333 37 19 chr1 92024350 92024512 -105170920 + MER44D DNA MER2_type 9 173 -532 4 1287 467 33 0 16 chr1 92024523 92024585 -105170847 + (CTA)n Simple_repeat Simple_repeat 2 62 0 4 1287 252 0 0 0 chr1 92024589 92024617 -105170815 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1287 222 128 0 0 chr1 92024666 92024705 -105170727 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1287 1229 71 0 6 chr1 92024884 92025054 -105170378 + (GAA)n Simple_repeat Simple_repeat 2 170 0 4 1287 236 100 25 0 chr1 92025202 92025242 -105170190 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1287 230 305 17 0 chr1 92025274 92025333 -105170099 - Tigger7 DNA MER2_type -2344 147 88 5 1287 414 287 43 0 chr1 92026409 92026524 -105168908 + PB1D7 SINE Alu 1 120 0 5 1287 468 0 0 0 chr1 92026526 92026578 -105168854 + (CAAG)n Simple_repeat Simple_repeat 2 53 0 5 1287 438 88 0 0 chr1 92027012 92027080 -105168352 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1287 22 35 0 0 chr1 92027177 92027206 -105168226 + AT_rich Low_complexity Low_complexity 1 29 0 5 1287 431 286 86 60 chr1 92027898 92028132 -105167300 + MER63D DNA AcHobo 1 240 -821 5 1287 180 111 0 0 chr1 92028348 92028375 -105167057 + (CACG)n Simple_repeat Simple_repeat 4 30 0 5 1287 260 258 0 16 chr1 92028482 92028545 -105166887 - B4A SINE B4 -230 62 1 5 1287 403 331 35 0 chr1 92030053 92030198 -105165234 - MIR SINE MIR -32 230 81 5 1287 343 262 71 45 chr1 92030316 92030428 -105165004 - PB1D9 SINE Alu -5 115 1 6 1287 259 269 54 108 chr1 92030957 92031086 -105164346 - MIRb SINE MIR -118 150 29 6 1287 1349 149 14 0 chr1 92033672 92033894 -105161538 - URR1B DNA MER1_type 0 225 1 6 1287 453 295 82 61 chr1 92034083 92034376 -105161056 + MLT1E LTR MaLR 379 677 -3 6 1287 587 278 77 27 chr1 92034961 92035183 -105160249 - Lx6 LINE L1 0 7460 7228 6 1287 1040 225 14 18 chr1 92035199 92035416 -105160016 - B3 SINE B2 0 216 1 6 1287 555 29 0 0 chr1 92036052 92036121 -105159311 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1287 227 279 0 0 chr1 92036710 92036753 -105158679 + RSINE1 SINE B4 3 45 -120 6 1287 1016 306 54 3 chr1 92036809 92037104 -105158328 - MTD LTR MaLR -4 415 106 6 1287 236 169 43 43 chr1 92037231 92037324 -105158108 + (TA)n Simple_repeat Simple_repeat 2 94 0 6 1287 274 242 15 15 chr1 92037485 92037552 -105157880 - MTD LTR MaLR -290 106 40 6 1287 669 274 66 53 chr1 92037858 92038085 -105157347 + B4A SINE B4 1 230 -62 7 1287 2020 33 0 0 chr1 92038085 92038329 -105157103 - L1_Mus4 LINE L1 -257 6379 6136 7 1287 339 320 21 0 chr1 92038708 92038805 -105156627 - B4A SINE B4 -192 100 2 7 1287 214 308 0 15 chr1 92039473 92039539 -105155893 + B4A SINE B4 1 65 -227 7 1287 314 308 168 8 chr1 92042069 92042200 -105153232 + L1M5 LINE L1 5529 5680 -560 7 1287 254 307 53 0 chr1 92042219 92042294 -105153138 - ID4 SINE ID -1 82 4 7 1287 1043 296 48 69 chr1 92042300 92042776 -105152656 + RLTR12B LTR ERVK 32 497 -31 7 1287 966 235 20 5 chr1 92042868 92043065 -105152367 - B4 SINE B4 -3 289 90 7 1287 871 186 43 109 chr1 92043085 92043296 -105152136 + B3 SINE B2 20 216 0 7 1287 594 203 11 11 chr1 92044460 92044639 -105150793 + (ATGGTG)n Simple_repeat Simple_repeat 2 180 0 7 1287 324 0 0 0 chr1 92045831 92045867 -105149565 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1287 1602 227 57 0 chr1 92046031 92046383 -105149049 - ORR1D1 LTR MaLR -2 372 1 8 1287 327 355 20 0 chr1 92047214 92047411 -105148021 - L1MB7 LINE L1 -6 6178 5978 8 1287 278 347 16 55 chr1 92047576 92047704 -105147728 - Tigger5 DNA MER2_type -2283 123 1 8 1287 396 0 0 0 chr1 92047869 92047913 -105147519 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1287 315 0 0 0 chr1 92047913 92047947 -105147485 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1287 1286 105 15 40 chr1 92048368 92048567 -105146865 - B2_Mm2 SINE B2 0 195 2 8 1287 474 18 0 0 chr1 92048814 92048869 -105146563 + (TC)n Simple_repeat Simple_repeat 1 55 0 8 1287 854 281 44 67 chr1 92050882 92051179 -105144253 + B4A SINE B4 1 290 -2 8 1287 608 48 0 24 chr1 92051225 92051310 -105144122 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 8 1287 454 312 42 29 chr1 92054995 92055233 -105140199 + L1MB4 LINE L1 5759 5999 -181 9 1287 1149 208 19 0 chr1 92055369 92055581 -105139851 - B3 SINE B2 0 216 1 9 1287 780 223 17 28 chr1 92056202 92056382 -105139050 - B3A SINE B2 -16 182 5 9 1287 242 245 140 35 chr1 92056502 92056616 -105138816 - MTEa LTR MaLR -54 325 200 9 1287 405 0 0 0 chr1 92057555 92057600 -105137832 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1287 419 301 32 76 chr1 92057621 92057779 -105137653 - B4A SINE B4 0 292 142 9 1287 1209 231 212 3 chr1 92057788 92058123 -105137309 - MTD LTR MaLR -12 407 3 9 1287 238 311 105 40 chr1 92058128 92058252 -105137180 - B4A SINE B4 -160 132 1 9 1287 219 256 0 0 chr1 92058617 92058707 -105136725 + (TG)n Simple_repeat Simple_repeat 1 90 0 9 1287 1251 94 0 0 chr1 92058725 92058905 -105136527 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1287 571 214 111 19 chr1 92059874 92060036 -105135396 + B3A SINE B2 4 180 -18 9 1287 528 324 110 53 chr1 92060173 92060626 -105134806 - L1MC LINE L1 -2406 3740 3262 9 1287 390 327 36 155 chr1 92060818 92061256 -105134176 - MLT1F2 LTR MaLR -4 556 171 1 1287 252 0 0 0 chr1 92061350 92061378 -105134054 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 1 1287 524 282 87 7 chr1 92061883 92062033 -105133399 - RSINE1 SINE B4 -1 164 3 1 1287 644 314 106 0 chr1 92062033 92062240 -105133192 - B4A SINE B4 -62 230 2 1 1287 279 184 23 11 chr1 92062461 92062549 -105132883 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1287 305 317 0 0 chr1 92063979 92064061 -105131371 - ID4 SINE ID 0 83 2 1 1287 354 345 0 14 chr1 92064087 92064228 -105131204 - B1F SINE Alu -10 139 1 1 1287 1688 245 135 19 chr1 92064334 92064905 -105130527 + RCHARR1 DNA MER1_type 3 639 -335 1 1287 207 0 0 0 chr1 92064906 92064929 -105130503 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 1287 1219 226 48 0 chr1 92064929 92065199 -105130233 - Lx5 LINE L1 -13 7037 6755 1 1287 240 281 31 15 chr1 92065271 92065336 -105130096 + MTEb LTR MaLR 299 364 -15 1 1287 405 0 0 0 chr1 92065692 92065737 -105129695 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1287 335 331 28 35 chr1 92065764 92065905 -105129527 - RSINE1 SINE B4 -23 142 3 1 1287 222 259 0 0 chr1 92065997 92066051 -105129381 + B4A SINE B4 2 55 -237 1 1287 879 259 49 87 chr1 92066497 92066785 -105128647 + B4 SINE B4 16 292 0 1 1287 206 32 32 0 chr1 92066791 92066822 -105128610 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1287 183 139 0 0 chr1 92067376 92067412 -105128020 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1287 606 207 0 0 chr1 92067432 92067611 -105127821 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1287 1806 187 111 3 chr1 92067800 92068170 -105127262 + MTD LTR MaLR 10 419 0 1 1287 2596 137 44 19 chr1 92068196 92068380 -105127052 - MTC LTR MaLR 0 421 244 1 1287 2522 92 3 0 chr1 92068380 92068706 -105126726 - ORR1A2 LTR MaLR 0 327 1 1 1287 2596 137 44 19 chr1 92068706 92068932 -105126500 - MTC LTR MaLR -178 243 1 1 1287 339 214 12 1 chr1 92069109 92069198 -105126234 - L1MA5A LINE L1 -455 5845 5757 1 1287 1536 214 101 18 chr1 92069589 92069927 -105125505 - ORR1D2 LTR MaLR -4 366 1 1 1287 363 93 52 26 chr1 92070057 92070134 -105125298 + (CATA)n Simple_repeat Simple_repeat 2 80 0 1 1287 536 261 149 36 chr1 92071977 92072172 -105123260 - B4A SINE B4 -60 232 16 1 1287 225 0 0 0 chr1 92072225 92072250 -105123182 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1287 186 103 0 0 chr1 92073426 92073455 -105121977 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1287 239 349 0 0 chr1 92073456 92073542 -105121890 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1287 300 303 0 13 chr1 92073625 92073702 -105121730 - B4A SINE B4 -216 76 1 1 1287 225 0 0 0 chr1 92073709 92073734 -105121698 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1287 412 233 12 0 chr1 92073735 92073821 -105121611 - PB1D10 SINE Alu -13 104 18 1 1287 1400 153 9 0 chr1 92074412 92074634 -105120798 - URR1A DNA MER1_type -2 224 1 1 1287 265 238 0 60 chr1 92074641 92074708 -105120724 - B1F SINE Alu -86 63 1 1 1287 1945 191 26 51 chr1 92074962 92075174 -105120258 + MTD LTR MaLR 1 207 -212 1 1287 2491 83 6 6 chr1 92075174 92075503 -105119929 + ORR1A4 LTR MaLR 1 329 0 1 1287 1945 191 26 51 chr1 92075503 92075720 -105119712 + MTD LTR MaLR 208 419 0 1 1287 780 261 25 45 chr1 92076987 92077188 -105118244 + B4A SINE B4 2 198 -94 1 1287 424 299 15 45 chr1 92077230 92077363 -105118069 + B4A SINE B4 158 286 -6 1 1287 347 0 23 0 chr1 92077421 92077464 -105117968 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1287 526 279 173 6 chr1 92078477 92078650 -105116782 - ID_B1 SINE B4 -18 206 5 1 1287 297 167 0 0 chr1 92079524 92079578 -105115854 + (ATGGTG)n Simple_repeat Simple_repeat 5 58 0 1 1287 312 48 0 0 chr1 92079625 92079667 -105115765 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1287 260 172 293 0 chr1 92079702 92079760 -105115672 + B3A SINE B2 1 75 -123 1 1287 633 61 0 0 chr1 92080675 92080757 -105114675 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 1 1287 1045 96 18 18 chr1 92081116 92081286 -105114146 + L1_Mus3 LINE L1 6469 6638 0 1 1287 362 21 0 21 chr1 92081318 92081366 -105114066 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1 1287 272 296 68 0 chr1 92081795 92081883 -105113549 - PB1D9 SINE Alu 0 120 27 1 1287 637 374 50 36 chr1 92082075 92082514 -105112918 - MT2A LTR ERVL -85 448 4 1 1287 232 25 0 70 chr1 92083584 92083627 -105111805 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 1 1287 1015 298 18 14 chr1 92083627 92083903 -105111529 - B4 SINE B4 -13 279 3 1 1287 197 303 30 15 chr1 92084024 92084091 -105111341 + MIRb SINE MIR 119 186 -82 1 1287 2958 52 70 0 chr1 92084249 92084633 -105110799 + IAPLTR2a LTR ERVK 1 411 0 1 1287 240 245 34 0 chr1 92087290 92087355 -105108077 + ID4_ SINE ID 1 67 -16 1 1287 260 27 27 0 chr1 92089077 92089114 -105106318 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1287 225 0 0 0 chr1 92089114 92089138 -105106294 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1287 435 70 0 0 chr1 92089272 92089329 -105106103 + Lx2 LINE L1 6477 6533 -464 1 1287 21 0 0 0 chr1 92089375 92089396 -105106036 + AT_rich Low_complexity Low_complexity 1 21 0 1 1287 734 196 94 0 chr1 92089912 92090050 -105105382 + B3A SINE B2 1 151 -47 1 1287 613 126 18 0 chr1 92090052 92090163 -105105269 + (TCTCCC)n Simple_repeat Simple_repeat 3 115 0 1 1287 348 24 0 0 chr1 92090164 92090205 -105105227 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1287 213 196 0 0 chr1 92091259 92091310 -105104122 + (CACG)n Simple_repeat Simple_repeat 1 51 0 1 1287 386 306 41 8 chr1 92091339 92091461 -105103971 - B4A SINE B4 -163 129 4 1 1287 2413 82 32 0 chr1 92091681 92091997 -105103435 + ORR1A3 LTR MaLR 1 326 0 1 1287 2075 146 60 29 chr1 92092083 92092465 -105102967 - ORR1B1 LTR MaLR 0 394 1 1 1287 209 172 16 0 chr1 92092505 92092569 -105102863 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1 1287 1652 229 74 26 chr1 92092651 92093041 -105102391 + MTD LTR MaLR 1 409 -10 1 1287 912 263 126 26 chr1 92093057 92093797 -105101635 - L1M2 LINE L1 -522 5778 4959 1 1287 360 236 9 28 chr1 92093879 92093988 -105101444 - L1M3 LINE L1 -954 5186 5080 1 1287 1779 173 125 12 chr1 92094211 92094429 -105101003 + ORR1C2 LTR MaLR 1 172 -212 1 1287 557 28 14 0 chr1 92094429 92094500 -105100932 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1287 1779 151 112 6 chr1 92094500 92094636 -105100796 + ORR1C2 LTR MaLR 173 342 -42 1 1287 623 159 32 159 chr1 92094636 92094793 -105100639 + B1_Mus1 SINE Alu 2 138 -10 1 1287 351 0 0 0 chr1 92094793 92094832 -105100600 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1287 466 36 0 0 chr1 92094832 92094887 -105100545 + ORR1C2 LTR MaLR 330 384 0 1 1287 1936 138 77 99 chr1 92095540 92095943 -105099489 - ORR1B1 LTR MaLR 0 394 1 1 1287 282 116 0 0 chr1 92096148 92096191 -105099241 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1287 387 0 0 0 chr1 92096193 92096236 -105099196 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1287 350 74 19 0 chr1 92096268 92096322 -105099110 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 1287 550 319 145 46 chr1 92096449 92096774 -105098658 + ORR1E LTR MaLR 3 359 0 1 1287 288 0 0 0 chr1 92098604 92098636 -105096796 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1287 475 226 25 12 chr1 92102699 92102819 -105092613 + PB1D7 SINE Alu 2 119 -1 1 1287 585 262 45 15 chr1 92107875 92108007 -105087425 - ID_B1 SINE B4 -10 214 79 1 1287 317 117 17 0 chr1 92108115 92108175 -105087257 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1287 783 109 29 6 chr1 92108196 92108371 -105087061 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1287 188 305 17 17 chr1 92111377 92111437 -105083995 + L2 LINE L2 1955 2014 -1405 1 1287 357 24 0 0 chr1 92111717 92111759 -105083673 + (CTGTG)n Simple_repeat Simple_repeat 5 46 0 1 1287 39 0 0 0 chr1 92112042 92112081 -105083351 + AT_rich Low_complexity Low_complexity 1 39 0 1 1287 750 177 0 44 chr1 92112740 92112876 -105082556 + B1_Mur1 SINE Alu 20 149 0 1 1287 750 164 12 12 chr1 92113929 92114090 -105081342 + CT-rich Low_complexity Low_complexity 4 164 0 1 1287 2076 185 93 10 chr1 92114640 92115027 -105080405 + MTD LTR MaLR 1 419 0 1 1287 191 319 103 26 chr1 92116428 92116544 -105078888 + MIRb SINE MIR 99 223 -45 1 1287 393 22 0 0 chr1 92116737 92116783 -105078649 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1287 789 117 0 0 chr1 92116783 92116910 -105078522 + (GA)n Simple_repeat Simple_repeat 1 128 0 1 1287 892 251 123 72 chr1 92117230 92117837 -105077595 - RMER13A LTR ERVK -221 737 1 1 1287 207 167 0 0 chr1 92119196 92119238 -105076194 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1 1287 339 25 0 0 chr1 92120100 92120140 -105075292 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1287 2413 76 13 3 chr1 92120282 92120599 -105074833 - ORR1A2 LTR MaLR 0 327 8 1 1287 532 312 57 33 chr1 92121228 92121440 -105073992 + MER20 DNA MER1_type 2 218 -1 1 1287 239 109 0 61 chr1 92121668 92121717 -105073715 + T-rich Low_complexity Low_complexity 1 46 0 1 1287 250 333 157 11 chr1 92121733 92121918 -105073514 + LTR33A_ LTR ERVL 184 395 -125 1 1287 235 208 234 0 chr1 92122817 92122894 -105072538 - MER103 DNA DNA -9 157 63 1 1287 188 342 35 43 chr1 92122944 92123060 -105072372 - MER5A DNA MER1_type -28 161 47 1 1287 376 288 46 148 chr1 92123082 92123387 -105072045 + B4A SINE B4 1 274 -18 1 1287 386 249 4 0 chr1 92123403 92123649 -105071783 + (CA)n Simple_repeat Simple_repeat 1 247 0 1 1287 369 0 0 0 chr1 92123649 92123690 -105071742 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1287 531 0 0 0 chr1 92124757 92124816 -105070616 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1287 1046 194 73 15 chr1 92126888 92127092 -105068340 - B3 SINE B2 0 216 1 2 1287 371 342 70 70 chr1 92127678 92127920 -105067512 + MER47B DNA MER2_type 6 247 -171 2 1287 246 62 0 0 chr1 92128149 92128181 -105067251 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2 1287 1315 166 9 5 chr1 92129729 92129953 -105065479 + URR1B DNA MER1_type 1 225 0 2 1287 405 299 81 58 chr1 92130772 92130946 -105064486 - MLT1C LTR MaLR -270 197 20 2 1287 1270 233 75 42 chr1 92132219 92132299 -105063133 - ORR1D2 LTR MaLR 0 370 293 2 1287 321 26 0 0 chr1 92132299 92132337 -105063095 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 2 1287 1270 233 75 42 chr1 92132337 92132614 -105062818 - ORR1D2 LTR MaLR -78 292 2 2 1287 3449 28 2 2 chr1 92132972 92133368 -105062064 + MTA_Mm LTR MaLR 1 396 0 2 1287 1834 148 97 18 chr1 92134109 92134440 -105060992 - ORR1D1 LTR MaLR -5 369 13 2 1287 674 284 55 30 chr1 92134869 92135105 -105060327 - Charlie13b DNA Charlie -81 431 190 2 1287 253 341 48 12 chr1 92135118 92135201 -105060231 - Charlie13b DNA Charlie -394 118 33 2 1287 184 263 85 34 chr1 92136616 92136675 -105058757 + L4 LINE RTE 1763 1824 -205 2 1287 527 270 23 62 chr1 92137402 92137532 -105057900 - RSINE1 SINE B4 0 165 41 2 1287 1028 135 4 0 chr1 92138134 92138402 -105057030 + (CA)n Simple_repeat Simple_repeat 1 269 0 2 1287 380 285 93 21 chr1 92138452 92138528 -105056904 + B4A SINE B4 2 87 -205 2 1287 216 326 137 0 chr1 92138528 92138623 -105056809 + PB1D7 SINE Alu 3 110 -10 2 1287 224 255 0 0 chr1 92138794 92138845 -105056587 + A-rich Low_complexity Low_complexity 1 51 0 2 1287 234 250 53 123 chr1 92139958 92140072 -105055360 + L3 LINE CR1 4253 4358 -131 2 1287 313 280 6 144 chr1 92140980 92141147 -105054285 + MTE2b LTR MaLR 234 377 -2 2 1287 514 249 63 80 chr1 92141210 92141385 -105054047 + B4 SINE B4 7 178 -114 2 1287 283 267 15 147 chr1 92141410 92141546 -105053886 + MT2B LTR ERVL 154 271 -330 2 1287 572 266 24 0 chr1 92141425 92141549 -105053883 + B1_Mur1 SINE Alu 2 128 -21 2 1287 339 145 7 103 chr1 92141549 92141695 -105053737 + A-rich Low_complexity Low_complexity 6 137 0 2 1287 288 0 0 0 chr1 92141757 92141789 -105053643 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1287 405 0 0 0 chr1 92141789 92141833 -105053599 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1287 282 312 66 78 chr1 92143024 92143311 -105052121 - L2c LINE L2 0 3387 3076 2 1288 189 279 29 29 chr1 92143846 92143916 -105051516 + L2 LINE L2 251 320 -3099 2 1288 549 0 0 0 chr1 92145556 92145617 -105049815 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1288 441 0 0 0 chr1 92146830 92146879 -105048553 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1288 186 171 61 0 chr1 92148591 92148673 -105046759 + (TCTG)n Simple_repeat Simple_repeat 4 90 0 2 1288 231 229 13 67 chr1 92148679 92148754 -105046678 - ID4 SINE ID -11 72 2 2 1288 198 118 0 0 chr1 92148872 92148906 -105046526 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1288 306 73 0 0 chr1 92148921 92148962 -105046470 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1288 195 324 167 0 chr1 92149223 92149325 -105046107 - MIRb SINE MIR -18 250 132 2 1288 225 0 0 0 chr1 92150472 92150497 -105044935 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 1288 401 254 7 27 chr1 92150643 92150789 -105044643 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 2 1288 519 279 88 78 chr1 92150958 92151307 -105044125 + MLT1C LTR MaLR 42 378 -12 2 1288 189 246 79 32 chr1 92151851 92151914 -105043518 + MER5B DNA MER1_type 41 106 -72 2 1288 1930 219 19 57 chr1 92151944 92152365 -105043067 + MTD LTR MaLR 1 405 -14 2 1288 246 287 96 0 chr1 92153149 92153243 -105042189 - L1MB7 LINE L1 -27 6157 6055 2 1288 234 0 0 0 chr1 92156206 92156232 -105039200 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1288 237 296 8 42 chr1 92158246 92158366 -105037066 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 2 1288 488 248 355 33 chr1 92158387 92158602 -105036830 - B4 SINE B4 -1 291 8 2 1288 287 316 170 28 chr1 92159326 92159508 -105035924 - MER58A DNA MER1_type -16 208 1 2 1288 663 295 5 5 chr1 92160047 92160238 -105035194 + B3A SINE B2 2 192 -6 2 1288 381 289 10 39 chr1 92160248 92160456 -105034976 - L1MC LINE L1 -1561 4585 4381 2 1288 337 329 0 45 chr1 92160506 92160671 -105034761 - MTEb LTR MaLR -2 377 219 2 1288 554 306 82 47 chr1 92160671 92161014 -105034418 + L1M2 LINE L1 3905 4259 -1884 2 1288 1864 290 26 98 chr1 92161020 92161432 -105034000 + Lx7 LINE L1 4905 5251 -596 2 1288 897 297 0 0 chr1 92161432 92161641 -105033791 + B3 SINE B2 1 209 -7 2 1288 1864 281 57 63 chr1 92161641 92162428 -105033004 + Lx7 LINE L1 5252 6082 -1614 2 1288 779 126 25 12 chr1 92162476 92162599 -105032833 + polypurine Low_complexity Low_complexity 2 124 0 2 1288 1020 124 11 6 chr1 92162599 92162778 -105032654 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1288 779 126 25 12 chr1 92162778 92162815 -105032617 + polypurine Low_complexity Low_complexity 125 163 0 2 1288 216 195 0 0 chr1 92163802 92163843 -105031589 + GA-rich Low_complexity Low_complexity 2 42 0 2 1288 963 174 0 0 chr1 92164010 92164251 -105031181 + GA-rich Low_complexity Low_complexity 1 241 0 2 1288 369 131 0 0 chr1 92164263 92164324 -105031108 + (GGA)n Simple_repeat Simple_repeat 2 62 0 2 1288 548 203 351 50 chr1 92165913 92166152 -105029280 + MTEa LTR MaLR 4 314 -65 2 1288 200 103 77 0 chr1 92166152 92166191 -105029241 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 2 1288 22 0 0 0 chr1 92166259 92166281 -105029151 + AT_rich Low_complexity Low_complexity 1 22 0 2 1288 2218 89 3 110 chr1 92167078 92167443 -105027989 + ORR1A3 LTR MaLR 1 326 0 2 1288 225 229 0 0 chr1 92168710 92168758 -105026674 - MT2A LTR ERVL -484 49 2 2 1288 531 321 62 29 chr1 92168969 92169245 -105026187 + B4A SINE B4 1 285 -7 2 1288 268 299 0 0 chr1 92170180 92170247 -105025185 - AmnSINE1 SINE SINE -2 573 507 2 1288 598 261 14 21 chr1 92170553 92170694 -105024738 + B1F SINE Alu 1 140 -9 2 1288 393 22 0 0 chr1 92170736 92170782 -105024650 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 2 1288 495 195 133 0 chr1 92171124 92171237 -105024195 - B3 SINE B2 -88 128 1 2 1288 4124 183 63 109 chr1 92171423 92172362 -105023070 - RMER19B LTR ERVK -6 896 1 2 1288 750 262 147 27 chr1 92174928 92175187 -105020245 + B4 SINE B4 3 292 0 2 1288 185 194 0 0 chr1 92177119 92177150 -105018282 + MIR SINE MIR 27 57 -205 2 1288 756 245 41 36 chr1 92178317 92178512 -105016920 + B3A SINE B2 3 198 0 2 1288 298 311 40 52 chr1 92178891 92179064 -105016368 + L1M5 LINE L1 2704 2874 -3272 2 1288 225 0 0 0 chr1 92180491 92180516 -105014916 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1288 291 275 63 18 chr1 92180709 92180820 -105014612 + MER53 DNA hAT 1 116 -77 2 1288 21 0 0 0 chr1 92180857 92180878 -105014554 + AT_rich Low_complexity Low_complexity 1 21 0 2 1288 545 299 68 0 chr1 92181474 92181621 -105013811 + RSINE1 SINE B4 5 161 -4 2 1288 1551 230 84 31 chr1 92182580 92182962 -105012470 + MTD LTR MaLR 4 405 -14 2 1288 1446 6 0 0 chr1 92183766 92183929 -105011503 + (GGGAGA)n Simple_repeat Simple_repeat 6 168 0 2 1288 182 294 72 14 chr1 92184148 92184217 -105011215 + L3 LINE CR1 4153 4225 -264 2 1288 271 273 0 0 chr1 92185275 92185341 -105010091 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1288 252 59 0 0 chr1 92187144 92187178 -105008254 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1288 624 27 0 0 chr1 92187310 92187384 -105008048 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 2 1288 909 198 14 78 chr1 92187877 92188096 -105007336 + B3 SINE B2 1 205 -11 2 1288 516 287 13 59 chr1 92188337 92188489 -105006943 - RSINE1 SINE B4 0 165 21 2 1288 691 173 23 6 chr1 92188621 92188795 -105006637 + CT-rich Low_complexity Low_complexity 1 177 0 2 1288 506 257 69 28 chr1 92189302 92189432 -105006000 + MLT1A0 LTR MaLR 210 347 -18 2 1288 282 29 0 0 chr1 92189432 92189467 -105005965 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 1288 506 257 69 28 chr1 92189467 92189480 -105005952 + MLT1A0 LTR MaLR 348 359 -6 2 1288 210 204 41 0 chr1 92189539 92189588 -105005844 + C-rich Low_complexity Low_complexity 5 55 0 2 1288 310 142 32 43 chr1 92189840 92189912 -105005520 - PB1D10 SINE Alu -7 113 40 2 1288 280 191 72 14 chr1 92190153 92190222 -105005210 + MTD LTR MaLR 345 417 -2 2 1288 247 164 16 16 chr1 92190431 92190493 -105004939 + CT-rich Low_complexity Low_complexity 3 64 0 2 1288 1234 212 107 129 chr1 92190724 92191238 -105004194 - RMER19C LTR ERVK -11 600 1 2 1288 728 99 9 0 chr1 92191368 92191479 -105003953 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 2 1288 204 97 0 0 chr1 92192114 92192145 -105003287 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1288 974 266 34 109 chr1 92192947 92193366 -105002066 - MTE2a LTR MaLR -17 402 18 2 1288 209 163 0 20 chr1 92193402 92193452 -105001980 + CT-rich Low_complexity Low_complexity 2 50 0 2 1288 265 24 23 23 chr1 92194070 92194113 -105001319 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1288 456 259 23 0 chr1 92194118 92194233 -105001199 - B1F SINE Alu 0 120 1 2 1288 379 347 115 9 chr1 92195335 92195553 -104999879 - MIRb SINE MIR -14 254 14 2 1288 471 356 53 7 chr1 92196195 92196478 -104998954 + Lx8 LINE L1 7135 7430 -43 2 1288 785 261 93 35 chr1 92197634 92197892 -104997540 + B4A SINE B4 2 274 -18 3 1288 258 320 59 34 chr1 92197943 92198147 -104997285 - RLTR21 LTR ERVK -320 1252 1044 3 1288 448 319 71 37 chr1 92198468 92198746 -104996686 + B4A SINE B4 1 290 -2 3 1288 209 291 88 77 chr1 92199229 92199396 -104996036 - MIRm SINE MIR -65 203 26 3 1288 1205 68 0 0 chr1 92199763 92199911 -104995521 + B1_Mus1 SINE Alu 1 148 0 3 1288 181 28 0 100 chr1 92199911 92199951 -104995481 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 3 1288 596 258 21 4 chr1 92199959 92200123 -104995309 - B3A SINE B2 0 216 49 3 1288 435 348 61 0 chr1 92201147 92201328 -104994104 + MER58A DNA MER1_type 19 210 -14 3 1288 222 62 0 0 chr1 92201775 92201807 -104993625 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1288 434 223 68 43 chr1 92201942 92202059 -104993373 + MLT2B4 LTR ERVL 381 500 -56 3 1288 408 147 0 0 chr1 92202059 92202134 -104993298 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1288 261 261 42 32 chr1 92202177 92202272 -104993160 - MLT2B3 LTR ERVL -9 558 463 3 1288 288 0 0 0 chr1 92202320 92202352 -104993080 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1288 344 77 19 0 chr1 92202352 92202404 -104993028 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1288 1057 308 93 34 chr1 92202440 92202567 -104992865 - MLT2B3 LTR ERVL -112 442 312 3 1288 2646 159 0 12 chr1 92202567 92202993 -104992439 - MTC LTR MaLR 0 421 1 3 1288 1057 308 93 34 chr1 92202993 92203282 -104992150 - MLT2B3 LTR ERVL -243 311 1 3 1288 1310 316 39 37 chr1 92203384 92203926 -104991506 - Lx8 LINE L1 -471 7002 6460 3 1288 751 284 86 28 chr1 92203900 92204190 -104991242 + Lx8 LINE L1 7009 7315 -158 3 1288 2364 171 22 2 chr1 92204241 92204652 -104990780 - MTD LTR MaLR 0 419 1 3 1288 21 0 0 0 chr1 92204713 92204734 -104990698 + AT_rich Low_complexity Low_complexity 1 21 0 3 1288 337 144 46 46 chr1 92205632 92205719 -104989713 + Lx7 LINE L1 7610 7696 0 3 1288 607 280 28 78 chr1 92206007 92206224 -104989208 + B3A SINE B2 11 216 0 3 1288 547 333 18 73 chr1 92206795 92207008 -104988424 - Charlie5 DNA MER1_type -4 2620 2416 3 1288 1011 161 0 0 chr1 92207008 92207188 -104988244 + CT-rich Low_complexity Low_complexity 1 180 0 3 1288 1120 51 11 43 chr1 92207194 92207378 -104988054 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 3 1288 547 333 18 73 chr1 92207378 92207429 -104988003 - Charlie5 DNA MER1_type -209 2415 2364 3 1288 402 258 70 43 chr1 92207435 92207621 -104987811 + CYRA11_Mm Unknown Y-chromosome 145 335 -282 3 1288 965 156 12 0 chr1 92207462 92207622 -104987810 - URR1B DNA MER1_type -4 221 60 3 1288 204 121 30 0 chr1 92209105 92209138 -104986294 + G-rich Low_complexity Low_complexity 1 34 0 3 1288 370 320 25 44 chr1 92210243 92210403 -104985029 - MIR SINE MIR -73 189 33 3 1288 1065 109 0 13 chr1 92211050 92211199 -104984233 - B1_Mus2 SINE Alu 0 147 1 3 1288 432 0 0 0 chr1 92211757 92211805 -104983627 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1288 2098 122 88 20 chr1 92213221 92213563 -104981869 - ORR1B2 LTR MaLR -1 366 2 3 1288 742 64 18 0 chr1 92214142 92214251 -104981181 + (TCTA)n Simple_repeat Simple_repeat 1 111 0 3 1288 324 328 138 39 chr1 92215177 92215459 -104979973 - L1MC4 LINE L1 -400 7642 7333 3 1288 314 176 3 69 chr1 92215462 92215541 -104979891 - PB1D10 SINE Alu -46 103 27 3 1288 271 264 38 53 chr1 92215599 92215731 -104979701 - L1MC4 LINE L1 -585 7297 7168 3 1288 248 300 115 11 chr1 92217147 92217283 -104978149 + MIRm SINE MIR 93 248 -20 3 1288 232 297 88 0 chr1 92218198 92218289 -104977143 + MTD LTR MaLR 205 303 -116 3 1288 189 0 0 0 chr1 92218532 92218553 -104976879 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1288 366 279 56 56 chr1 92218711 92218855 -104976577 - B4A SINE B4 -142 150 7 3 1288 614 325 47 9 chr1 92219005 92219219 -104976213 + MER58A DNA MER1_type 3 224 0 3 1288 644 227 136 6 chr1 92220445 92220622 -104974810 + RMER30 DNA MER1_type 1 200 -2 3 1288 578 139 17 5 chr1 92220771 92220870 -104974562 + B1_Mur2 SINE Alu 21 149 0 3 1288 249 311 59 96 chr1 92221800 92221935 -104973497 - MER103 DNA DNA -3 163 34 3 1288 380 311 60 88 chr1 92222752 92223002 -104972430 + B4 SINE B4 50 292 0 3 1288 261 0 0 0 chr1 92223044 92223073 -104972359 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1288 498 277 110 60 chr1 92223403 92223847 -104971585 + L1MB7 LINE L1 5483 5933 -245 3 1288 334 294 21 21 chr1 92223881 92223975 -104971457 + 5S rRNA rRNA 8 101 -20 3 1288 582 86 0 0 chr1 92224502 92224583 -104970849 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1288 204 224 0 20 chr1 92224583 92224599 -104970833 + (TG)n Simple_repeat Simple_repeat 2 17 0 3 1288 252 0 0 0 chr1 92224599 92224627 -104970805 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1288 204 224 0 20 chr1 92224627 92224660 -104970772 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1288 771 259 33 112 chr1 92224689 92224993 -104970439 - B4A SINE B4 -8 284 5 3 1288 23 0 0 0 chr1 92225036 92225059 -104970373 + AT_rich Low_complexity Low_complexity 1 23 0 3 1288 264 193 22 22 chr1 92225445 92225535 -104969897 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 3 1288 1934 207 98 21 chr1 92225638 92226106 -104969326 - RMER20A LTR ERVK 0 516 13 3 1288 214 273 0 0 chr1 92226116 92226171 -104969261 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 3 1288 1258 252 108 18 chr1 92227083 92227192 -104968240 + MTD LTR MaLR 6 116 -303 3 1288 180 0 0 0 chr1 92227192 92227212 -104968220 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1288 1258 252 108 18 chr1 92227212 92227482 -104967950 + MTD LTR MaLR 117 418 -1 3 1288 261 0 0 0 chr1 92227874 92227903 -104967529 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1288 840 67 0 0 chr1 92227903 92228008 -104967424 - B1_Mm SINE Alu -10 137 33 3 1288 2595 136 110 17 chr1 92228004 92228469 -104966963 - RMER19B LTR ERVK -37 865 358 3 1288 838 207 259 3 chr1 92228449 92228742 -104966690 - MT2A LTR ERVL -164 369 2 3 1288 612 340 73 64 chr1 92229726 92230179 -104965253 - L4 LINE RTE -114 1915 1459 3 1288 199 383 24 24 chr1 92230575 92230658 -104964774 - L4 LINE RTE -960 1069 987 3 1288 419 347 111 16 chr1 92230789 92231032 -104964400 - L4 LINE RTE -1211 818 553 3 1288 456 19 0 0 chr1 92231082 92231135 -104964297 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1288 324 0 0 0 chr1 92231135 92231170 -104964262 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1288 856 215 75 30 chr1 92231266 92231467 -104963965 - B3 SINE B2 -6 210 1 3 1288 284 250 10 102 chr1 92235163 92235261 -104960171 - B3 SINE B2 -17 199 111 3 1288 1706 191 28 41 chr1 92236523 92236911 -104958521 - RMER15 LTR ERVL -164 411 29 3 1288 1240 248 31 44 chr1 92237409 92237729 -104957703 + ORR1D2 LTR MaLR 55 370 0 3 1288 279 79 0 0 chr1 92237781 92237819 -104957613 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1288 236 274 237 73 chr1 92239383 92239469 -104955963 - B3 SINE B2 -10 206 1 3 1288 361 241 55 44 chr1 92239469 92239560 -104955872 - B4A SINE B4 -200 92 1 3 1288 594 252 165 110 chr1 92240028 92240358 -104955074 - MLT1E2 LTR MaLR -205 449 43 3 1288 424 302 60 32 chr1 92241434 92241718 -104953714 - L1ME4a LINE L1 -218 5906 5615 3 1288 381 272 43 93 chr1 92241994 92242029 -104953403 - B2_Mm1t SINE B2 -30 163 127 3 1288 360 0 0 0 chr1 92242029 92242069 -104953363 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1288 695 219 23 0 chr1 92242069 92242197 -104953235 - B3A SINE B2 -60 138 8 3 1288 492 309 117 8 chr1 92242199 92242591 -104952841 - L1MC4 LINE L1 -329 7713 7279 3 1288 353 266 241 0 chr1 92242752 92242959 -104952473 - L1MC4 LINE L1 -988 7054 6798 3 1288 181 75 24 24 chr1 92243019 92243060 -104952372 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 3 1288 321 298 12 0 chr1 92243314 92243398 -104952034 + GA-rich Low_complexity Low_complexity 6 90 0 3 1288 322 293 111 28 chr1 92243401 92243545 -104951887 + HAL1-3A_ME LINE L1 2285 2440 -418 3 1288 801 269 130 18 chr1 92244525 92244679 -104950753 + B4 SINE B4 45 206 -86 3 1288 396 0 0 0 chr1 92244679 92244723 -104950709 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1288 801 269 130 18 chr1 92244723 92244791 -104950641 + B4 SINE B4 207 291 -1 3 1288 632 269 81 72 chr1 92244791 92245180 -104950252 + RLTR12B LTR ERVK 1 378 -190 3 1288 269 309 162 30 chr1 92245566 92245763 -104949669 - L1ME1 LINE L1 0 6179 5957 3 1288 458 303 7 0 chr1 92245761 92245906 -104949526 - L1ME1 LINE L1 -390 5789 5644 3 1288 324 0 0 0 chr1 92245958 92245994 -104949438 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1288 495 0 0 0 chr1 92247563 92247618 -104947814 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1288 327 85 0 0 chr1 92247621 92247668 -104947764 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1288 409 279 72 0 chr1 92247668 92247779 -104947653 - B3 SINE B2 -50 166 48 3 1288 329 282 135 40 chr1 92247918 92248066 -104947366 - RSINE1 SINE B4 0 165 4 3 1288 295 157 39 19 chr1 92250517 92250569 -104944863 - ORR1D2 LTR MaLR -312 58 6 3 1288 744 150 0 0 chr1 92250678 92250838 -104944594 + (GA)n Simple_repeat Simple_repeat 2 161 0 3 1288 432 97 0 0 chr1 92251224 92251286 -104944146 + (TCTG)n Simple_repeat Simple_repeat 1 62 0 3 1288 684 36 0 0 chr1 92251287 92251370 -104944062 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 3 1288 217 288 55 0 chr1 92251432 92251505 -104943927 - RSINE1 SINE B4 -6 159 83 3 1288 214 296 17 162 chr1 92251531 92251648 -104943784 - B4 SINE B4 -192 100 1 3 1288 755 62 0 0 chr1 92252999 92253095 -104942337 + B2_Mm1t SINE B2 13 108 -85 3 1288 202 312 132 18 chr1 92253739 92253853 -104941579 + MIRb SINE MIR 130 256 -12 3 1288 529 180 47 0 chr1 92254549 92254721 -104940711 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1288 290 154 61 15 chr1 92254768 92254900 -104940532 + (TG)n Simple_repeat Simple_repeat 1 138 0 3 1288 195 42 0 0 chr1 92254954 92254978 -104940454 + (TGG)n Simple_repeat Simple_repeat 3 26 0 3 1288 501 142 46 23 chr1 92254975 92255148 -104940284 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1288 305 47 0 23 chr1 92255149 92255193 -104940239 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1288 197 83 28 0 chr1 92255193 92255228 -104940204 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1288 555 303 62 112 chr1 92255248 92255553 -104939879 - B4 SINE B4 -2 290 1 4 1288 576 0 0 0 chr1 92255937 92256001 -104939431 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1288 891 235 186 109 chr1 92256037 92256386 -104939046 - MTE2b LTR MaLR 0 379 4 4 1288 517 314 25 50 chr1 92257933 92258174 -104937258 - L1M2 LINE L1 -516 5781 5547 4 1288 609 150 0 0 chr1 92258496 92258629 -104936803 + CT-rich Low_complexity Low_complexity 1 133 0 4 1288 666 297 67 0 chr1 92258642 92258881 -104936551 + Lx8 LINE L1 6826 7080 -393 4 1288 1468 280 91 23 chr1 92258905 92259805 -104935627 - L1MB3 LINE L1 -106 6077 5083 4 1288 220 188 0 40 chr1 92260298 92260348 -104935084 + B2_Mm1t SINE B2 1 48 -145 4 1288 250 311 57 19 chr1 92262392 92262497 -104932935 + L2a LINE L2 2994 3102 -324 4 1288 707 311 116 53 chr1 92262648 92263028 -104932404 + MLT1F LTR MaLR 130 533 -15 4 1288 446 315 72 90 chr1 92263635 92263970 -104931462 - MLT1I LTR MaLR 0 411 83 4 1288 241 387 35 42 chr1 92264390 92264533 -104930899 - MLT1K LTR MaLR -413 182 41 4 1288 1133 113 6 0 chr1 92264543 92264720 -104930712 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 1288 208 18 0 123 chr1 92264864 92264929 -104930503 + (CCCCAG)n Simple_repeat Simple_repeat 2 58 0 4 1288 418 352 44 40 chr1 92265372 92265600 -104929832 + L3 LINE CR1 3177 3405 -1084 4 1288 183 311 13 13 chr1 92265667 92265742 -104929690 + L3 LINE CR1 3514 3588 -901 4 1288 2149 148 8 32 chr1 92265790 92266166 -104929266 - ORR1B2 LTR MaLR 0 367 1 4 1288 279 0 0 0 chr1 92266464 92266495 -104928937 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1288 282 87 0 0 chr1 92266907 92266953 -104928479 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1288 1123 49 7 0 chr1 92266953 92267095 -104928337 - B1_Mus1 SINE Alu 0 148 6 4 1288 472 245 110 79 chr1 92266955 92267119 -104928313 - B4A SINE B4 -68 224 56 4 1288 585 319 76 51 chr1 92267126 92267559 -104927873 - Arthur1 DNA Tip100 -140 3807 3364 4 1288 269 368 65 7 chr1 92267599 92267752 -104927680 - Arthur1 DNA Tip100 -3582 365 204 4 1288 1119 221 136 60 chr1 92268046 92268393 -104927039 - MTD LTR MaLR 0 419 11 4 1288 671 246 37 16 chr1 92269362 92269552 -104925880 + B3 SINE B2 4 197 -19 4 1288 458 281 114 38 chr1 92270065 92270276 -104925156 + MLT1B LTR MaLR 2 228 -162 4 1288 432 97 0 0 chr1 92272243 92272305 -104923127 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1288 1134 115 0 0 chr1 92272305 92272479 -104922953 + (TATATG)n Simple_repeat Simple_repeat 3 176 0 4 1288 270 265 137 0 chr1 92272572 92272674 -104922758 - MLT1A0 LTR MaLR -34 356 241 4 1288 321 300 10 20 chr1 92272737 92272839 -104922593 - MLT1A0 LTR MaLR -188 177 77 4 1288 323 283 120 34 chr1 92272907 92273024 -104922408 + MTD LTR MaLR 10 136 -283 4 1288 312 200 19 135 chr1 92272976 92273080 -104922352 - MTD LTR MaLR -327 92 1 4 1288 2169 152 3 6 chr1 92273849 92274207 -104921225 - RLTR15 LTR ERVK -2 357 1 4 1289 232 187 133 0 chr1 92275332 92275407 -104920025 - MER57D LTR ERV1 0 411 327 4 1289 835 230 56 23 chr1 92275779 92275993 -104919439 - ID_B1 SINE B4 -3 221 1 4 1289 183 42 0 0 chr1 92276018 92276042 -104919390 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1289 446 219 413 28 chr1 92276161 92276371 -104919061 - B4A SINE B4 0 292 2 4 1289 243 199 37 62 chr1 92276395 92276485 -104918947 - B1F1 SINE Alu -2 147 30 4 1289 281 171 0 24 chr1 92277381 92277465 -104917967 + CT-rich Low_complexity Low_complexity 3 84 0 4 1289 439 123 25 0 chr1 92277503 92277584 -104917848 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1289 389 225 42 67 chr1 92278452 92278571 -104916861 - URR1B DNA MER1_type 0 225 110 4 1289 558 0 0 0 chr1 92278661 92278723 -104916709 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 4 1289 238 270 40 119 chr1 92278724 92278780 -104916652 - PB1D7 SINE Alu -10 110 18 4 1289 240 222 0 0 chr1 92278780 92278825 -104916607 - ID_B1 SINE B4 -81 143 99 4 1289 859 82 15 0 chr1 92278830 92278964 -104916468 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 4 1289 573 257 14 14 chr1 92279017 92279159 -104916273 - ID_B1 SINE B4 -81 143 2 4 1289 224 154 37 37 chr1 92279275 92279329 -104916103 + CT-rich Low_complexity Low_complexity 3 56 0 4 1289 21 57 0 0 chr1 92279367 92279402 -104916030 + AT_rich Low_complexity Low_complexity 1 35 0 4 1289 786 293 42 31 chr1 92280937 92281226 -104914206 + B4A SINE B4 1 292 0 4 1289 576 218 0 0 chr1 92282188 92282367 -104913065 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1289 310 340 169 46 chr1 92282472 92282774 -104912658 - MLT1D LTR MaLR -17 488 150 4 1289 984 235 91 11 chr1 92282828 92283091 -104912341 - B4 SINE B4 -6 286 3 4 1289 248 302 55 36 chr1 92283102 92283212 -104912220 - MLT1D LTR MaLR -348 119 8 4 1289 306 0 0 0 chr1 92283259 92283293 -104912139 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1289 555 16 0 0 chr1 92283293 92283356 -104912076 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1289 380 323 459 14 chr1 92284033 92284251 -104911181 - MLT1B LTR MaLR -72 318 4 4 1289 1541 113 22 18 chr1 92284263 92284488 -104910944 + URR1A DNA MER1_type 1 226 0 4 1289 636 260 149 34 chr1 92284592 92284833 -104910599 + Lx8 LINE L1 7065 7345 -128 4 1289 1333 239 38 41 chr1 92284833 92285200 -104910232 - ORR1D2 LTR MaLR -4 366 1 4 1289 636 260 149 34 chr1 92285200 92285308 -104910124 + Lx8 LINE L1 7346 7454 -19 4 1289 529 231 103 0 chr1 92285311 92285428 -104910004 + B4A SINE B4 103 231 -61 4 1289 468 0 0 0 chr1 92285472 92285524 -104909908 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1289 2322 109 0 0 chr1 92285524 92285845 -104909587 + ORR1A3 LTR MaLR 6 326 0 4 1289 226 261 74 57 chr1 92286710 92286832 -104908600 - ORR1E LTR MaLR -235 124 1 4 1289 939 262 30 86 chr1 92288196 92288497 -104906935 + ORR1E LTR MaLR 1 284 -75 4 1289 2500 136 19 0 chr1 92288647 92289022 -104906410 - RLTR14 LTR ERV1 0 382 1 4 1289 347 273 0 22 chr1 92289027 92289117 -104906315 + RSINE1 SINE B4 78 165 0 4 1289 594 103 0 0 chr1 92289673 92289760 -104905672 + (CATA)n Simple_repeat Simple_repeat 1 87 0 4 1289 267 189 0 0 chr1 92290268 92290321 -104905111 + CT-rich Low_complexity Low_complexity 5 57 0 4 1289 36 23 0 0 chr1 92290364 92290407 -104905025 + AT_rich Low_complexity Low_complexity 1 43 0 4 1289 298 296 18 18 chr1 92290666 92290776 -104904656 - MIR SINE MIR -125 137 28 4 1289 194 91 30 0 chr1 92291138 92291171 -104904261 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1289 186 103 0 0 chr1 92291200 92291229 -104904203 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 4 1289 646 303 26 5 chr1 92292006 92292195 -104903237 + MER82 DNA MER2_type 2 194 -459 4 1289 947 223 32 36 chr1 92292348 92292567 -104902865 + ID_B1 SINE B4 2 219 -5 4 1289 2337 190 229 8 chr1 92292690 92293294 -104902138 - RMER19A LTR ERVK 0 737 1 4 1289 255 260 85 115 chr1 92293296 92293461 -104901971 + MER82 DNA MER2_type 201 360 -293 4 1289 369 0 0 0 chr1 92293499 92293540 -104901892 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1289 1194 234 30 44 chr1 92294664 92294959 -104900473 + B4 SINE B4 2 292 0 4 1289 239 322 28 14 chr1 92295675 92295820 -104899612 + (TG)n Simple_repeat Simple_repeat 2 148 0 4 1289 284 138 0 15 chr1 92295835 92295901 -104899531 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1289 1170 315 57 6 chr1 92296432 92296927 -104898505 - Lx8 LINE L1 -375 7098 6579 4 1289 359 228 12 25 chr1 92298174 92298255 -104897177 + ID2 SINE ID 2 81 -2 4 1289 210 317 79 24 chr1 92298264 92298390 -104897042 + ID_B1 SINE B4 1 133 -91 4 1289 946 229 146 84 chr1 92298713 92299070 -104896362 + MTE2a LTR MaLR 1 379 0 4 1289 362 293 105 0 chr1 92299711 92299844 -104895588 + MamGypLTR2b LTR Gypsy 776 922 0 4 1289 281 347 39 44 chr1 92299916 92300097 -104895335 - MIRb SINE MIR -46 222 43 4 1289 350 273 26 26 chr1 92300183 92300337 -104895095 + GA-rich Low_complexity Low_complexity 1 154 0 4 1289 702 232 21 53 chr1 92300660 92300847 -104894585 + B3A SINE B2 1 181 -17 4 1289 500 236 3 8 chr1 92300850 92301210 -104894222 + (CA)n Simple_repeat Simple_repeat 1 357 0 4 1289 506 305 103 81 chr1 92303804 92304114 -104891318 + MER21B LTR ERV1 9 325 -538 4 1289 473 354 27 34 chr1 92304289 92304576 -104890856 - MLT1A1 LTR MaLR -1 407 87 4 1289 226 258 16 31 chr1 92304690 92304754 -104890678 + MER21B LTR ERV1 649 711 -152 4 1289 237 320 74 6 chr1 92305410 92305586 -104889846 - L1M5 LINE L1 -603 5521 5334 4 1289 296 274 79 28 chr1 92306208 92306315 -104889117 + B4A SINE B4 150 272 -20 4 1289 255 239 0 0 chr1 92306376 92306443 -104888989 + (CATA)n Simple_repeat Simple_repeat 4 70 0 4 1289 429 243 26 35 chr1 92306482 92306597 -104888835 + PB1 SINE Alu 14 127 0 4 1289 483 208 9 45 chr1 92308395 92308506 -104886926 - PB1 SINE Alu 0 127 21 4 1289 441 0 0 0 chr1 92308532 92308581 -104886851 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1289 576 0 0 0 chr1 92308581 92308644 -104886788 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1289 306 211 40 18 chr1 92308701 92308790 -104886642 - B4A SINE B4 -18 274 179 4 1289 335 263 139 33 chr1 92308816 92308938 -104886494 - B4A SINE B4 -157 135 1 4 1289 1973 146 77 6 chr1 92309928 92310265 -104885167 - ORR1B2 LTR MaLR 0 367 7 4 1289 402 253 206 32 chr1 92313907 92314062 -104881370 + B3A SINE B2 1 182 -16 4 1289 1593 243 27 25 chr1 92315598 92315965 -104879467 - MTEb LTR MaLR -11 368 1 4 1289 340 221 90 35 chr1 92316405 92316564 -104878868 - MTEb LTR MaLR 0 384 219 4 1289 207 0 0 0 chr1 92316613 92316636 -104878796 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1289 1272 48 0 0 chr1 92316636 92316783 -104878649 - B1_Mus2 SINE Alu 0 147 1 4 1289 317 324 38 81 chr1 92316814 92316999 -104878433 - MTEb LTR MaLR -192 182 6 4 1289 3284 59 7 0 chr1 92317778 92318182 -104877250 - MTB_Mm LTR MaLR 0 407 1 5 1289 581 81 46 11 chr1 92318372 92318459 -104876973 - MTB_Mm LTR MaLR -317 90 1 5 1289 481 290 67 49 chr1 92319871 92320096 -104875336 - MER74B LTR ERVL -329 293 65 5 1289 181 119 0 45 chr1 92320369 92320413 -104875019 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1289 342 295 13 0 chr1 92321522 92321600 -104873832 - RSINE1 SINE B4 -84 81 3 5 1289 462 101 0 0 chr1 92321655 92321724 -104873708 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1289 248 310 45 75 chr1 92321762 92321928 -104873504 - RMER17C LTR ERVK -68 342 181 5 1289 400 31 30 30 chr1 92321928 92321994 -104873438 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 5 1289 248 310 45 75 chr1 92321994 92322026 -104873406 - RMER17C LTR ERVK -230 180 150 5 1289 305 343 2 0 chr1 92322140 92322232 -104873200 - B3A SINE B2 -51 165 75 5 1289 266 114 0 43 chr1 92322955 92323001 -104872431 - PB1D9 SINE Alu -2 118 75 5 1289 659 223 23 0 chr1 92323001 92323131 -104872301 - B1_Mur1 SINE Alu -16 133 1 5 1289 243 0 0 0 chr1 92323297 92323324 -104872108 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 5 1289 408 88 0 0 chr1 92323457 92323514 -104871918 + (T)n Simple_repeat Simple_repeat 1 57 0 5 1289 340 297 52 39 chr1 92323835 92323989 -104871443 - MER58A DNA MER1_type -68 156 1 5 1289 227 278 102 25 chr1 92323989 92324107 -104871325 + MIRb SINE MIR 133 259 -9 5 1289 2496 89 3 0 chr1 92324604 92324930 -104870502 + ORR1A2 LTR MaLR 1 327 0 5 1289 337 275 124 97 chr1 92324934 92325119 -104870313 - ORR1E LTR MaLR -163 196 7 5 1289 862 307 152 6 chr1 92325316 92325811 -104869621 - MLT1F1 LTR MaLR 0 569 3 5 1289 484 234 11 0 chr1 92325952 92326046 -104869386 + ID_B1 SINE B4 84 178 -46 5 1289 451 257 46 0 chr1 92326046 92326061 -104869371 + PB1D10 SINE Alu 3 116 -1 5 1289 366 268 6 11 chr1 92326130 92326304 -104869128 + GA-rich Low_complexity Low_complexity 3 175 0 5 1289 270 371 47 33 chr1 92326330 92326542 -104868890 + MER2 DNA MER2_type 22 236 -109 5 1289 798 288 120 29 chr1 92328097 92328286 -104867146 + MLT2B2 LTR ERVL 21 204 -311 5 1289 1165 262 91 9 chr1 92328286 92328636 -104866796 + MTE2b LTR MaLR 1 379 0 5 1289 798 288 120 29 chr1 92328636 92328754 -104866678 + MLT2B2 LTR ERVL 205 355 -160 5 1289 186 150 0 0 chr1 92328763 92328803 -104866629 + (TGG)n Simple_repeat Simple_repeat 1 40 0 5 1289 213 94 0 0 chr1 92328834 92328866 -104866566 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1289 4046 84 36 16 chr1 92329003 92329559 -104865873 + RMER2 LTR ERV1 1 567 0 5 1289 193 275 143 29 chr1 92330190 92330295 -104865137 - MIR SINE MIR -116 146 30 5 1289 252 77 0 0 chr1 92331324 92331363 -104864069 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1289 2289 101 6 3 chr1 92332854 92333172 -104862260 - ORR1A2 LTR MaLR -8 319 1 5 1289 9905 143 94 23 chr1 92333172 92335004 -104860428 - ORR1A2-int LTR MaLR 0 1963 1 5 1289 2814 37 6 0 chr1 92335004 92335329 -104860103 - ORR1A2 LTR MaLR 0 327 1 5 1289 222 288 211 70 chr1 92335464 92335526 -104859906 - RSINE1 SINE B4 -2 163 89 5 1289 741 243 0 0 chr1 92335526 92335674 -104859758 - B1_Mur2 SINE Alu -1 148 1 5 1289 323 217 226 4 chr1 92335674 92335753 -104859679 - B4A SINE B4 -200 92 1 5 1289 201 167 0 0 chr1 92337020 92337056 -104858376 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5 1289 750 283 52 59 chr1 92337297 92337586 -104857846 - B4A SINE B4 -2 290 4 5 1289 680 126 8 0 chr1 92338494 92338613 -104856819 + (TCCA)n Simple_repeat Simple_repeat 3 122 0 5 1289 213 39 0 0 chr1 92338723 92338749 -104856683 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1289 448 111 22 0 chr1 92340250 92340340 -104855092 + (TC)n Simple_repeat Simple_repeat 1 92 0 5 1289 180 125 0 0 chr1 92340352 92340384 -104855048 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1289 306 160 0 39 chr1 92340384 92340436 -104854996 - HAL1-3A_ME LINE L1 -837 2021 1972 5 1289 313 288 0 0 chr1 92340550 92340623 -104854809 - ID4_ SINE ID -2 81 9 5 1289 450 154 0 0 chr1 92340628 92340706 -104854726 + (CAT)n Simple_repeat Simple_repeat 3 80 0 5 1289 348 292 87 17 chr1 92340848 92340963 -104854469 - PB1 SINE Alu -2 125 3 5 1289 210 323 0 15 chr1 92340904 92340970 -104854462 - B4A SINE B4 -147 145 81 5 1289 196 226 138 46 chr1 92341796 92341861 -104853571 - L3 LINE CR1 -3706 783 713 5 1289 214 151 0 75 chr1 92341972 92342158 -104853274 + (CAGA)n Simple_repeat Simple_repeat 3 174 0 5 1289 193 157 0 75 chr1 92342188 92342374 -104853058 + (CAGA)n Simple_repeat Simple_repeat 3 174 0 5 1289 214 154 0 74 chr1 92342420 92342802 -104852630 + (CAGA)n Simple_repeat Simple_repeat 1 353 0 5 1289 289 152 0 76 chr1 92342884 92343580 -104851852 + (CAGA)n Simple_repeat Simple_repeat 1 643 0 5 1289 181 163 0 73 chr1 92343652 92343844 -104851588 + (CAGA)n Simple_repeat Simple_repeat 1 178 0 5 1289 450 161 0 75 chr1 92343915 92344560 -104850872 + (CAGA)n Simple_repeat Simple_repeat 1 596 0 5 1289 356 133 38 70 chr1 92344474 92344660 -104850772 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 5 1289 310 162 0 74 chr1 92344682 92345263 -104850169 + (CAGA)n Simple_repeat Simple_repeat 1 537 0 5 1289 782 241 13 6 chr1 92345374 92345533 -104849899 + B3A SINE B2 1 160 -38 5 1289 420 20 0 0 chr1 92345540 92345589 -104849843 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1289 210 71 0 0 chr1 92345589 92345616 -104849816 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 5 1289 354 45 0 0 chr1 92345800 92345844 -104849588 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1289 207 0 0 0 chr1 92346220 92346243 -104849189 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1289 393 326 136 0 chr1 92346274 92346458 -104848974 + MER3 DNA MER1_type 1 209 0 5 1289 955 100 33 0 chr1 92346506 92346656 -104848776 - Lx3C LINE L1 -7 6969 6815 5 1289 385 314 68 37 chr1 92346704 92346866 -104848566 - L1MCa LINE L1 -4167 2341 2175 5 1289 797 79 9 0 chr1 92348296 92348410 -104847022 + (TC)n Simple_repeat Simple_repeat 2 116 0 5 1289 189 0 0 0 chr1 92348410 92348430 -104847002 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1289 1080 215 0 0 chr1 92348430 92348616 -104846816 - B3 SINE B2 -28 188 3 5 1289 359 374 27 0 chr1 92349769 92349916 -104845516 - L1ME4a LINE L1 -253 5871 5721 5 1289 904 214 55 0 chr1 92350119 92350301 -104845131 - B3A SINE B2 -1 197 6 5 1289 231 234 57 27 chr1 92351379 92351482 -104843950 - L2a LINE L2 -36 3351 3251 5 1289 213 352 72 60 chr1 92352770 92352936 -104842496 + MIRb SINE MIR 49 216 -52 5 1289 288 232 0 0 chr1 92353393 92353492 -104841940 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1289 300 318 91 57 chr1 92357582 92358002 -104837430 + L1M5 LINE L1 4360 4793 -1353 5 1289 1015 190 171 58 chr1 92358817 92359074 -104836358 + ORR1E LTR MaLR 71 356 -3 5 1289 270 0 0 0 chr1 92359188 92359218 -104836214 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1289 189 0 0 0 chr1 92359218 92359238 -104836194 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1289 948 285 8 28 chr1 92359253 92359502 -104835930 - B4 SINE B4 -30 262 19 5 1289 405 285 357 28 chr1 92359513 92359815 -104835617 + MTD LTR MaLR 14 414 -5 5 1289 552 231 0 0 chr1 92360155 92360259 -104835173 - RSINE1 SINE B4 -48 117 14 5 1289 321 100 0 0 chr1 92360508 92360558 -104834874 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1289 207 0 0 0 chr1 92361667 92361690 -104833742 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1289 213 132 0 0 chr1 92362731 92362769 -104832663 + (CAT)n Simple_repeat Simple_repeat 3 40 0 5 1289 309 267 46 34 chr1 92364884 92365023 -104830409 - B3A SINE B2 -53 142 1 5 1289 443 334 123 30 chr1 92366366 92366863 -104828569 + L1MA6 LINE L1 5753 6295 -5 5 1289 642 311 119 37 chr1 92368006 92368383 -104827049 - MER113 DNA MER1_type -82 439 32 5 1289 577 311 69 55 chr1 92368520 92368730 -104826702 + ORR1E LTR MaLR 5 220 -139 5 1289 213 39 0 0 chr1 92368730 92368756 -104826676 + (CACG)n Simple_repeat Simple_repeat 1 26 0 5 1289 577 311 69 55 chr1 92368756 92368892 -104826540 + ORR1E LTR MaLR 221 356 -3 5 1289 313 351 78 55 chr1 92368959 92369215 -104826217 - LTR33A LTR ERVL -11 509 248 5 1289 547 282 37 49 chr1 92370580 92370744 -104824688 + B3A SINE B2 35 196 -2 5 1289 792 233 31 26 chr1 92372411 92372605 -104822827 + B4 SINE B4 94 288 -4 5 1289 211 298 0 0 chr1 92372612 92372669 -104822763 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 5 1289 322 241 23 12 chr1 92372671 92372843 -104822589 + (CATA)n Simple_repeat Simple_repeat 4 177 0 5 1289 339 288 18 0 chr1 92372844 92372955 -104822477 + (CATATA)n Simple_repeat Simple_repeat 1 113 0 5 1289 219 227 0 0 chr1 92372959 92373025 -104822407 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1289 468 328 103 72 chr1 92373041 92373487 -104821945 + LTR37B LTR ERV1 7 466 -2 5 1289 195 129 0 0 chr1 92373902 92373933 -104821499 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 1289 199 212 148 12 chr1 92374155 92374236 -104821196 - L3 LINE CR1 -794 3695 3604 5 1289 378 0 0 0 chr1 92374891 92374933 -104820499 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1289 201 94 0 0 chr1 92374933 92374965 -104820467 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1289 672 271 31 36 chr1 92375481 92375676 -104819756 + B3A SINE B2 1 194 -4 5 1289 1778 217 76 8 chr1 92376160 92376554 -104818878 + MTC LTR MaLR 1 421 0 5 1289 1053 284 60 68 chr1 92377352 92377734 -104817698 - MTEa LTR MaLR 0 379 1 5 1289 189 0 0 0 chr1 92378823 92378844 -104816588 + (GA)n Simple_repeat Simple_repeat 1 21 0 5 1289 445 194 0 0 chr1 92379379 92379451 -104815981 + ID_B1 SINE B4 124 195 -29 5 1289 368 333 83 18 chr1 92381904 92382072 -104813360 - L1MC3 LINE L1 -1185 6600 6422 5 1289 299 279 96 102 chr1 92382072 92382397 -104813035 + MLT1A LTR MaLR 10 368 -40 5 1289 459 181 0 25 chr1 92382631 92382750 -104812682 + CT-rich Low_complexity Low_complexity 3 118 0 6 1289 1571 165 75 174 chr1 92383493 92383919 -104811513 + ORR1C2 LTR MaLR 1 384 0 6 1289 3007 223 82 25 chr1 92383919 92384974 -104810458 + ORR1C2-int LTR MaLR 1 1124 -246 6 1289 918 171 78 21 chr1 92384960 92385151 -104810281 + ORR1C2 LTR MaLR 180 381 -3 6 1289 1572 198 37 7 chr1 92385182 92385482 -104809950 + ORR1C1 LTR MaLR 35 343 -35 6 1289 1043 264 37 102 chr1 92385871 92386275 -104809157 - MTE2a LTR MaLR 0 379 2 6 1289 396 0 0 0 chr1 92386420 92386464 -104808968 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1289 198 0 0 0 chr1 92387469 92387491 -104807941 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1289 252 122 0 0 chr1 92387491 92387532 -104807900 + (ATG)n Simple_repeat Simple_repeat 1 41 0 6 1289 261 152 152 0 chr1 92387786 92387845 -104807587 - ORR1D2 LTR MaLR -297 73 6 6 1289 1051 202 33 130 chr1 92389276 92389730 -104805702 - RMER17C LTR ERVK 0 410 1 6 1289 345 208 0 0 chr1 92391268 92391345 -104804087 + CT-rich Low_complexity Low_complexity 3 79 0 6 1289 335 301 16 104 chr1 92393214 92393407 -104802025 - Charlie5 DNA MER1_type -28 2596 2421 6 1289 1844 141 118 27 chr1 92393492 92393821 -104801611 + ORR1B2 LTR MaLR 1 359 -8 6 1289 221 209 0 69 chr1 92394133 92394205 -104801227 + L3 LINE CR1 2395 2461 -2028 6 1289 1948 158 47 94 chr1 92394665 92395069 -104800363 - RLTR41 LTR ERV1 0 446 62 6 1289 556 298 110 14 chr1 92395082 92395300 -104800132 + MLT1B LTR MaLR 151 389 -1 6 1289 383 257 83 0 chr1 92395496 92395605 -104799827 + MER53 DNA hAT 16 133 -60 6 1289 418 370 0 0 chr1 92395744 92395852 -104799580 + RSINE1 SINE B4 45 152 -13 6 1289 336 48 0 0 chr1 92395877 92395919 -104799513 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1289 223 250 18 0 chr1 92395919 92395975 -104799457 + (CAA)n Simple_repeat Simple_repeat 3 59 0 6 1289 1550 233 39 0 chr1 92396039 92396395 -104799037 + ORR1D2 LTR MaLR 1 370 0 6 1289 1327 180 0 18 chr1 92397015 92397241 -104798191 - URR1A DNA MER1_type 0 226 5 6 1289 867 259 160 21 chr1 92397414 92397745 -104797687 - MLT1B LTR MaLR -9 381 5 6 1289 809 194 7 0 chr1 92397821 92397960 -104797472 + B1_Mur1 SINE Alu 5 144 -5 6 1289 1098 184 61 5 chr1 92398332 92398545 -104796887 + URR1B DNA MER1_type 1 225 0 6 1289 3116 58 18 13 chr1 92398557 92398955 -104796477 + MTB LTR MaLR 1 400 0 6 1289 289 304 0 47 chr1 92400631 92400738 -104794694 + B1F SINE Alu 40 141 -8 6 1289 317 238 12 24 chr1 92400743 92400825 -104794607 + ID4_ SINE ID 2 82 -1 6 1289 227 299 15 15 chr1 92400826 92400894 -104794538 + GA-rich Low_complexity Low_complexity 1 68 0 6 1289 1201 236 140 22 chr1 92402232 92402454 -104792978 + ORR1E LTR MaLR 1 259 -100 6 1289 2347 152 45 18 chr1 92402454 92402850 -104792582 + MTB_Mm LTR MaLR 1 407 0 6 1289 1201 236 140 22 chr1 92402850 92402948 -104792484 + ORR1E LTR MaLR 260 358 -1 6 1289 333 0 0 0 chr1 92403942 92403979 -104791453 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1289 226 328 128 24 chr1 92404000 92404125 -104791307 - MLT1I LTR MaLR -6 405 268 6 1289 3267 66 0 2 chr1 92404916 92405324 -104790108 + MTB_Mm LTR MaLR 1 407 0 6 1290 205 306 125 53 chr1 92405958 92406110 -104789322 + MIR3 SINE MIR 19 181 -27 6 1290 1215 29 0 0 chr1 92406597 92406734 -104788698 + B1_Mus1 SINE Alu 1 137 -11 6 1290 252 69 16 65 chr1 92406917 92406979 -104788453 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1290 2288 103 22 0 chr1 92407078 92407390 -104788042 - ORR1A2 LTR MaLR -8 319 1 6 1290 390 69 0 0 chr1 92408312 92408370 -104787062 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1290 664 325 21 10 chr1 92408554 92408747 -104786685 - B3A SINE B2 -3 195 1 6 1290 1599 146 91 0 chr1 92408887 92409162 -104786270 + ORR1B1 LTR MaLR 1 300 -94 6 1290 2393 165 136 11 chr1 92409159 92409637 -104785795 - RMER19B LTR ERVK -12 890 353 6 1290 1248 131 0 214 chr1 92409661 92409942 -104785490 - RMER19B LTR ERVK -680 222 2 6 1290 729 169 0 0 chr1 92409942 92410056 -104785376 + ORR1B1 LTR MaLR 279 392 -2 6 1290 925 237 6 0 chr1 92410110 92410283 -104785149 + B3 SINE B2 1 174 -42 6 1290 504 0 0 0 chr1 92410328 92410384 -104785048 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1290 263 317 27 55 chr1 92410919 92411029 -104784403 + MLT1N2 LTR MaLR 95 201 -361 6 1290 1116 139 90 47 chr1 92411363 92411574 -104783858 + ORR1B1 LTR MaLR 1 220 -174 6 1290 273 206 33 0 chr1 92411575 92411667 -104783765 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 6 1290 992 143 0 0 chr1 92411671 92411818 -104783614 + ORR1B1 LTR MaLR 203 349 -45 6 1290 1293 199 124 27 chr1 92411826 92412125 -104783307 + Lx5 LINE L1 6718 7045 -5 6 1290 186 43 0 0 chr1 92412135 92412158 -104783274 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1290 271 170 38 0 chr1 92412160 92412213 -104783219 + ORR1B1 LTR MaLR 340 394 0 6 1290 233 172 16 0 chr1 92413499 92413563 -104781869 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1290 25 31 0 0 chr1 92413739 92413771 -104781661 + AT_rich Low_complexity Low_complexity 1 32 0 6 1290 786 243 0 27 chr1 92413882 92414030 -104781402 + RSINE1 SINE B4 1 144 -21 6 1290 338 294 37 14 chr1 92414421 92414560 -104780872 - L1M4 LINE L1 -1471 4675 4530 6 1290 338 129 16 0 chr1 92416415 92416477 -104778955 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 6 1290 716 274 21 37 chr1 92417719 92417956 -104777476 + B4 SINE B4 1 233 -59 6 1290 216 279 16 16 chr1 92417956 92418018 -104777414 + RSINE1 SINE B4 4 65 -100 6 1290 549 88 0 0 chr1 92418101 92418181 -104777251 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1290 207 0 0 0 chr1 92419394 92419417 -104776015 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1290 580 260 71 177 chr1 92419788 92420110 -104775322 + B4 SINE B4 5 292 0 6 1290 240 200 0 0 chr1 92420120 92420175 -104775257 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1290 427 320 38 27 chr1 92421289 92421475 -104773957 + L2 LINE L2 2705 2892 -527 6 1290 1902 148 341 2 chr1 92421633 92422067 -104773365 + RLTR31A_Mm LTR ERVK 1 581 -3 6 1290 726 248 4 9 chr1 92422449 92422722 -104772710 + (TGGA)n Simple_repeat Simple_repeat 1 271 0 6 1290 1279 94 33 6 chr1 92422722 92422904 -104772528 + B2_Mm2 SINE B2 1 187 -8 6 1290 292 343 14 27 chr1 92422904 92422964 -104772468 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 6 1290 215 269 34 47 chr1 92423031 92423130 -104772302 - MER5A DNA MER1_type -72 117 9 6 1290 1433 242 71 101 chr1 92423825 92424390 -104771042 + Lx8 LINE L1 6719 7266 -207 6 1290 384 234 0 13 chr1 92424524 92424602 -104770830 + ID_B1 SINE B4 127 203 -21 6 1290 196 72 0 67 chr1 92425446 92425491 -104769941 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 6 1290 2995 56 0 5 chr1 92425585 92425959 -104769473 - L1_Mus1 LINE L1 0 6567 6196 6 1290 862 258 10 31 chr1 92426360 92426420 -104769012 + B4 SINE B4 39 98 -194 6 1290 2211 94 24 51 chr1 92426420 92426755 -104768677 + ORR1A3 LTR MaLR 1 326 0 6 1290 862 258 10 31 chr1 92426755 92426890 -104768542 + B4 SINE B4 99 230 -62 6 1290 342 0 0 0 chr1 92426918 92426956 -104768476 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1290 393 129 0 0 chr1 92426956 92427025 -104768407 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1290 2472 184 60 71 chr1 92427606 92427624 -104767808 - RLTR11A LTR ERVK 0 528 512 6 1290 4461 57 0 11 chr1 92427624 92428188 -104767244 + L1Md_F2 LINE L1 6024 6581 -1 6 1290 2472 184 60 71 chr1 92428188 92428703 -104766729 - RLTR11A LTR ERVK -17 511 1 6 1290 746 274 109 38 chr1 92430587 92430775 -104764657 - BGLII_B LTR ERVK -17 424 221 6 1290 1020 39 19 19 chr1 92430775 92430932 -104764500 + (TTC)n Simple_repeat Simple_repeat 2 158 0 6 1290 746 274 109 38 chr1 92430932 92431138 -104764294 - BGLII_B LTR ERVK -221 220 2 6 1290 516 298 41 76 chr1 92431323 92431447 -104763985 + RSINE1 SINE B4 1 120 -45 6 1290 186 43 0 0 chr1 92431447 92431470 -104763962 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 6 1290 516 298 41 76 chr1 92431470 92431516 -104763916 + RSINE1 SINE B4 121 165 0 6 1290 417 199 0 0 chr1 92431584 92431715 -104763717 + (CA)n Simple_repeat Simple_repeat 2 132 0 6 1290 442 217 63 132 chr1 92433060 92433097 -104762335 + B4 SINE B4 74 221 -71 6 1290 983 31 31 23 chr1 92433097 92433219 -104762213 + B1_Mus1 SINE Alu 18 142 -6 6 1290 180 0 0 0 chr1 92433219 92433239 -104762193 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1290 241 239 41 27 chr1 92433374 92433447 -104761985 + ID4_ SINE ID 7 80 -3 6 1290 360 0 0 0 chr1 92433678 92433718 -104761714 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1290 2151 205 99 104 chr1 92433816 92434430 -104761002 + RMER19C LTR ERVK 1 611 0 6 1290 413 116 14 0 chr1 92434998 92435067 -104760365 + (TCC)n Simple_repeat Simple_repeat 3 72 0 6 1290 524 150 61 30 chr1 92435129 92435294 -104760138 + CT-rich Low_complexity Low_complexity 6 175 0 6 1290 748 249 41 6 chr1 92436096 92436266 -104759166 + B3A SINE B2 5 180 -18 6 1290 1698 198 67 31 chr1 92436282 92436349 -104759083 - ORR1D1 LTR MaLR -1 373 293 6 1290 2149 159 64 8 chr1 92436349 92436722 -104758710 - ORR1B1 LTR MaLR 0 394 1 6 1290 6296 178 92 27 chr1 92436722 92438139 -104757293 - ORR1B1-int LTR MaLR 0 1509 1 6 1290 2276 133 74 0 chr1 92438139 92438506 -104756926 - ORR1B1 LTR MaLR 0 394 1 6 1290 1698 198 67 31 chr1 92438506 92438796 -104756636 - ORR1D1 LTR MaLR -82 292 3 6 1290 710 87 58 0 chr1 92439241 92439344 -104756088 - B2_Mm2 SINE B2 -86 109 1 6 1290 570 332 141 48 chr1 92439446 92439880 -104755552 - MLT2B3 LTR ERVL -43 674 201 6 1290 1176 264 119 3 chr1 92440071 92440390 -104755042 + MTE2a LTR MaLR 1 356 -23 6 1290 384 22 0 0 chr1 92442243 92442288 -104753144 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 6 1290 679 306 94 0 chr1 92442288 92442468 -104752964 - ID_B1 SINE B4 -12 212 16 6 1290 1589 230 137 5 chr1 92442470 92442890 -104752542 - RCHARR1 DNA MER1_type -36 938 463 6 1290 1155 143 111 24 chr1 92442890 92442918 -104752514 - URR1A DNA MER1_type 0 226 203 6 1290 2932 107 21 114 chr1 92442918 92443490 -104751942 + MURVY-LTR LTR ERV1 1 519 0 6 1290 1155 143 111 24 chr1 92443490 92443669 -104751763 - URR1A DNA MER1_type -24 202 1 6 1290 660 239 68 0 chr1 92443673 92443836 -104751596 - RCHARR1 DNA MER1_type -505 469 296 6 1290 429 277 101 14 chr1 92443878 92444017 -104751415 - RCHARR1 DNA MER1_type -759 215 65 6 1290 246 276 52 31 chr1 92444339 92444436 -104750996 - ORR1E LTR MaLR -5 354 256 6 1290 2830 137 75 8 chr1 92444439 92444933 -104750499 - RLTR11A2 LTR ERVK 0 527 1 7 1290 330 274 18 33 chr1 92445121 92445212 -104750220 + MTE-int LTR MaLR 800 877 -703 7 1290 1218 312 134 12 chr1 92445850 92446424 -104749008 + Lx8 LINE L1 6825 7468 -5 7 1290 3653 33 31 57 chr1 92447099 92447587 -104747845 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1290 210 299 16 154 chr1 92448546 92448645 -104746787 - MIRb SINE MIR -35 233 155 7 1290 950 214 54 10 chr1 92448645 92448848 -104746584 - B3 SINE B2 -4 212 1 7 1290 210 299 16 154 chr1 92448848 92448930 -104746502 - MIRb SINE MIR -114 154 77 7 1290 699 12 0 0 chr1 92449188 92449268 -104746164 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 7 1290 214 211 39 0 chr1 92449764 92449816 -104745616 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1290 1125 168 5 38 chr1 92450237 92450447 -104744985 - B3 SINE B2 -6 210 8 7 1290 566 232 60 162 chr1 92451046 92451262 -104744170 - B3A SINE B2 0 195 2 7 1290 183 184 0 0 chr1 92451550 92451588 -104743844 + C-rich Low_complexity Low_complexity 3 40 0 7 1290 757 144 9 41 chr1 92452051 92452373 -104743059 + (CA)n Simple_repeat Simple_repeat 1 311 0 7 1290 307 183 0 112 chr1 92452382 92452462 -104742970 + HAL1-3A_ME LINE L1 1973 2043 -815 7 1290 804 267 22 58 chr1 92453776 92453999 -104741433 + B3 SINE B2 1 215 -1 7 1290 315 345 99 18 chr1 92454133 92454302 -104741130 - L2a LINE L2 -118 3308 3121 7 1290 396 0 0 0 chr1 92454302 92454346 -104741086 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1290 315 340 192 50 chr1 92454346 92455180 -104740252 - L2a LINE L2 -306 3120 2165 7 1290 386 306 18 9 chr1 92455415 92455524 -104739908 + Tigger5 DNA MER2_type 2297 2406 0 7 1290 3282 56 0 5 chr1 92456613 92457011 -104738421 + MTA_Mm LTR MaLR 1 396 0 7 1290 241 333 95 0 chr1 92457788 92457893 -104737539 - Charlie4z DNA MER1_type -17 150 36 7 1290 2020 150 48 27 chr1 92457916 92458287 -104737145 - ORR1B1 LTR MaLR -8 386 8 7 1290 350 277 11 11 chr1 92458313 92458408 -104737024 + B4A SINE B4 1 95 -197 7 1290 372 151 137 0 chr1 92458414 92458487 -104736945 + MTD LTR MaLR 1 83 -338 7 1290 329 262 0 0 chr1 92458487 92458567 -104736865 + Lx9 LINE L1 6953 7032 -612 7 1290 739 274 77 55 chr1 92458602 92458981 -104736451 + Lx9 LINE L1 7254 7640 -4 7 1290 249 265 29 48 chr1 92458996 92459099 -104736333 + Lx8 LINE L1 7363 7463 -10 7 1290 1288 226 123 6 chr1 92459145 92459470 -104735962 + MTD LTR MaLR 43 405 -14 7 1290 468 289 31 50 chr1 92459456 92459616 -104735816 + B4A SINE B4 68 224 -68 7 1290 314 152 71 57 chr1 92459679 92459749 -104735683 + HAL1-3A_ME LINE L1 1978 2048 -810 7 1290 190 310 65 60 chr1 92460183 92460368 -104735064 + L2a LINE L2 3025 3210 -216 7 1290 1124 256 39 127 chr1 92461207 92461623 -104733809 - MTE2a LTR MaLR 0 379 1 7 1290 4899 125 18 78 chr1 92461856 92462752 -104732680 - RMER21B LTR ERV1 0 842 1 7 1290 411 258 41 10 chr1 92462790 92462888 -104732544 + PB1D10 SINE Alu 4 104 -13 7 1290 195 42 0 0 chr1 92462888 92462912 -104732520 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1290 1504 116 23 0 chr1 92464107 92464322 -104731110 + URR1B DNA MER1_type 2 221 -4 7 1290 309 387 0 16 chr1 92464619 92464740 -104730692 - MIRb SINE MIR -85 183 65 7 1290 541 298 139 16 chr1 92465326 92465578 -104729854 - RMER15 LTR ERVL -17 558 276 7 1290 1230 266 135 15 chr1 92466763 92467229 -104728203 - Lx8 LINE L1 -260 7213 6692 7 1290 1404 195 137 27 chr1 92467234 92467571 -104727861 + ORR1D1 LTR MaLR 1 374 0 7 1290 1654 129 154 10 chr1 92468232 92468544 -104726888 + ORR1B2 LTR MaLR 1 357 -10 7 1290 198 0 0 0 chr1 92468717 92468739 -104726693 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1290 561 264 77 27 chr1 92469947 92470102 -104725330 - MLT1C LTR MaLR -232 235 72 7 1290 446 320 0 15 chr1 92470102 92470232 -104725200 - MLT1C LTR MaLR 0 408 281 7 1290 651 214 108 65 chr1 92470442 92470627 -104724805 - B3A SINE B2 -5 193 1 7 1290 271 254 29 13 chr1 92470627 92470714 -104724718 + MTEb LTR MaLR 275 366 -13 7 1290 230 222 37 122 chr1 92470741 92470823 -104724609 + LTR65 LTR ERV1 384 458 -211 7 1290 1192 85 6 6 chr1 92472864 92473029 -104722403 + B2_Mm2 SINE B2 1 165 -30 7 1290 483 122 0 0 chr1 92473199 92473289 -104722143 + (A)n Simple_repeat Simple_repeat 1 90 0 7 1290 268 301 12 24 chr1 92473736 92473821 -104721611 + MTEa LTR MaLR 281 364 -15 7 1290 183 80 0 0 chr1 92474750 92474775 -104720657 + (CTG)n Simple_repeat Simple_repeat 1 25 0 7 1290 518 344 105 70 chr1 92474903 92475303 -104720129 + MTE-int LTR MaLR 205 618 -962 7 1290 818 231 21 47 chr1 92475689 92475720 -104719712 - B3A SINE B2 -3 195 167 7 1290 450 0 0 0 chr1 92475720 92475770 -104719662 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1290 818 231 21 47 chr1 92475770 92475929 -104719503 - B3A SINE B2 -32 166 10 7 1290 352 335 92 17 chr1 92476190 92476430 -104719002 - L1MEc LINE L1 -5797 603 346 7 1290 248 289 83 51 chr1 92476545 92476702 -104718730 - L1MEc LINE L1 -6147 253 92 7 1290 279 315 43 0 chr1 92477482 92477574 -104717858 + (CATG)n Simple_repeat Simple_repeat 4 99 0 7 1290 305 287 47 54 chr1 92477793 92477892 -104717540 - MER53 DNA hAT -24 169 67 7 1290 759 237 71 0 chr1 92477892 92478061 -104717371 + B3A SINE B2 2 182 -16 7 1290 305 287 47 54 chr1 92478061 92478090 -104717342 - MER53 DNA hAT -127 66 42 7 1290 235 202 20 29 chr1 92478785 92478887 -104716545 + CT-rich Low_complexity Low_complexity 5 105 0 7 1290 926 249 57 47 chr1 92479210 92479509 -104715923 - ORR1E LTR MaLR 0 359 58 7 1290 231 271 55 0 chr1 92479867 92479945 -104715487 + ID4_ SINE ID 17 101 -51 7 1290 251 276 92 54 chr1 92479974 92480158 -104715274 + Charlie5 DNA MER1_type 2307 2497 -127 7 1290 2410 92 60 17 chr1 92481682 92482034 -104713398 + ORR1B2 LTR MaLR 1 367 0 7 1290 219 192 18 55 chr1 92482045 92482100 -104713332 + ID2 SINE ID 23 75 -8 7 1290 372 232 0 0 chr1 92484760 92484859 -104710573 + (TG)n Simple_repeat Simple_repeat 1 99 0 7 1290 272 286 66 0 chr1 92486269 92486360 -104709072 - B1F1 SINE Alu -4 145 49 7 1290 980 232 9 28 chr1 92486679 92486892 -104708540 + B3 SINE B2 3 211 -5 7 1290 991 312 91 26 chr1 92486898 92487412 -104708020 - L1_Mur3 LINE L1 -1052 4828 4276 7 1290 477 0 0 0 chr1 92487412 92487465 -104707967 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1290 991 312 91 26 chr1 92487465 92487532 -104707900 - L1_Mur3 LINE L1 -1605 4275 4210 7 1290 203 203 0 17 chr1 92487914 92487974 -104707458 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1290 666 186 53 0 chr1 92488430 92488543 -104706889 + B1F SINE Alu 1 119 -30 7 1290 342 126 58 0 chr1 92488582 92488669 -104706763 + A-rich Low_complexity Low_complexity 3 94 0 7 1290 509 353 95 29 chr1 92488796 92489111 -104706321 + MLT1F-int LTR MaLR 856 1191 -298 7 1290 186 150 0 0 chr1 92489517 92489557 -104705875 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 7 1290 540 152 85 9 chr1 92491699 92491805 -104703627 + ORR1B2 LTR MaLR 2 115 -279 7 1290 5718 108 37 24 chr1 92491805 92492792 -104702640 - RLTR13D3 LTR ERVK 0 1114 1 7 1290 1388 172 47 20 chr1 92492792 92493028 -104702404 + ORR1B2 LTR MaLR 125 367 0 7 1290 2665 129 20 73 chr1 92493732 92494173 -104701259 - RMER4A LTR ERVK 0 466 49 7 1290 525 12 24 24 chr1 92494173 92494255 -104701177 - L1Md_F2 LINE L1 -13 6569 6488 7 1290 2665 129 20 73 chr1 92494255 92494305 -104701127 - RMER4A LTR ERVK -418 48 1 7 1290 573 55 0 0 chr1 92494330 92494403 -104701029 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1290 335 320 100 50 chr1 92494492 92494732 -104700700 - L1M2 LINE L1 -2763 3380 3129 7 1290 1541 195 100 17 chr1 92494735 92494902 -104700530 + ORR1C2 LTR MaLR 1 184 -200 7 1290 519 17 0 0 chr1 92494902 92494962 -104700470 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 1290 1541 195 100 17 chr1 92494962 92495143 -104700289 + ORR1C2 LTR MaLR 185 378 -6 7 1290 306 0 0 0 chr1 92495593 92495627 -104699805 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1290 252 0 0 0 chr1 92495627 92495654 -104699778 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1290 185 271 0 40 chr1 92496146 92496196 -104699236 - L2 LINE L2 -1845 1574 1527 7 1290 267 268 69 48 chr1 92496833 92496978 -104698454 - ORR1E LTR MaLR -210 149 2 7 1290 296 297 56 71 chr1 92497030 92497065 -104698367 - B2_Mm1a SINE B2 0 193 156 7 1290 189 0 0 0 chr1 92497065 92497086 -104698346 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1290 573 260 48 36 chr1 92497086 92497246 -104698186 - B3A SINE B2 -38 155 1 7 1290 227 385 41 8 chr1 92497322 92497445 -104697987 + MER45R DNA Tip100 85 211 -1370 7 1290 722 276 18 36 chr1 92497903 92498125 -104697307 - RMER5 LTR ERV1 -316 218 1 7 1290 764 98 8 0 chr1 92498272 92498405 -104697027 + (TG)n Simple_repeat Simple_repeat 1 134 0 7 1290 317 185 1 29 chr1 92498461 92498569 -104696863 + PB1D10 SINE Alu 40 149 0 7 1290 834 65 187 0 chr1 92498957 92499080 -104696352 + B1_Mus1 SINE Alu 2 147 -1 7 1290 234 0 0 0 chr1 92499080 92499106 -104696326 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1290 35 54 0 0 chr1 92499180 92499236 -104696196 + AT_rich Low_complexity Low_complexity 1 56 0 7 1290 375 78 0 0 chr1 92499555 92499606 -104695826 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1290 298 268 23 11 chr1 92500341 92500428 -104695004 + B1F1 SINE Alu 2 89 -60 1 1290 240 149 0 0 chr1 92500438 92500485 -104694947 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1290 883 146 7 0 chr1 92501297 92501434 -104693998 + B1_Mus1 SINE Alu 10 147 -1 3 1290 22 0 0 0 chr1 92501845 92501867 -104693565 + AT_rich Low_complexity Low_complexity 1 22 0 4 1290 22 0 0 0 chr1 92501895 92501917 -104693515 + AT_rich Low_complexity Low_complexity 1 22 0 5 1290 358 259 0 24 chr1 92502823 92502906 -104692526 + RMER30 DNA MER1_type 11 91 -111 6 1290 433 232 30 0 chr1 92504967 92505066 -104690366 - ORR1E LTR MaLR -257 102 1 7 1290 324 211 50 109 chr1 92505734 92505835 -104689597 - RSINE1 SINE B4 -57 108 14 8 1290 1145 288 104 95 chr1 92510382 92511244 -104684188 - MTE-int LTR MaLR -378 1202 1 9 1290 940 271 60 26 chr1 92511271 92511563 -104683869 - MTE2a LTR MaLR -52 344 42 1 1290 433 263 57 41 chr1 92512118 92512241 -104683191 - B3 SINE B2 -22 194 70 1 1290 201 94 0 0 chr1 92512719 92512751 -104682681 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1290 276 257 135 54 chr1 92513903 92514051 -104681381 + L1MC4 LINE L1 6797 6956 -1086 1 1290 346 358 42 37 chr1 92515004 92515219 -104680213 + MER58A DNA MER1_type 9 224 0 1 1290 714 114 23 15 chr1 92515340 92515473 -104679959 + CT-rich Low_complexity Low_complexity 3 136 0 1 1290 373 305 16 34 chr1 92515635 92515827 -104679605 - B4 SINE B4 -18 274 47 1 1290 3199 54 13 8 chr1 92516673 92517067 -104678365 + MTA_Mm LTR MaLR 1 396 0 1 1290 393 273 23 29 chr1 92517126 92517290 -104678142 + B4 SINE B4 2 284 -8 1 1290 246 100 0 0 chr1 92517290 92517310 -104678122 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1290 372 22 0 0 chr1 92517310 92517355 -104678077 + (CCA)n Simple_repeat Simple_repeat 3 47 0 2 1290 246 100 0 0 chr1 92517355 92517374 -104678058 + (CA)n Simple_repeat Simple_repeat 1 19 0 2 1290 1123 219 124 59 chr1 92517407 92517762 -104677670 + MTEa LTR MaLR 2 379 0 2 1290 3840 272 101 90 chr1 92517762 92518123 -104677309 + MTEa-int LTR MaLR 1 365 -1215 2 1290 963 0 0 0 chr1 92518123 92518230 -104677202 + (GAA)n Simple_repeat Simple_repeat 2 108 0 2 1290 3840 272 101 90 chr1 92518230 92519310 -104676122 + MTEa-int LTR MaLR 366 1458 -122 2 1290 1386 119 188 7 chr1 92519310 92519581 -104675851 + ORR1B2 LTR MaLR 1 320 -47 2 1290 4233 61 40 9 chr1 92519581 92520124 -104675308 - LTRIS2 LTR ERV1 0 564 5 2 1290 899 204 45 13 chr1 92520127 92520351 -104675081 - RLTR1B-int LTR ERV1 -42 5021 4791 2 1290 1087 148 59 0 chr1 92520576 92520836 -104674596 - RLTR1B-int LTR ERV1 -486 2813 2669 2 1290 8650 127 101 52 chr1 92520823 92523073 -104672359 - RLTR1B-int LTR ERV1 -744 2555 760 2 1290 4465 144 15 15 chr1 92523064 92523819 -104671613 - RMER16-int LTR ERVK -3962 1444 690 2 1290 776 153 74 63 chr1 92523805 92523994 -104671438 - RMER16-int LTR ERVK -5075 331 141 2 1290 708 74 0 2 chr1 92524340 92524449 -104670983 - RLTR1B-int LTR ERV1 -3006 293 139 2 1290 4233 61 40 9 chr1 92524658 92525201 -104670231 - LTRIS2 LTR ERV1 0 564 5 2 1290 311 118 0 56 chr1 92525203 92525257 -104670175 + ORR1B2 LTR MaLR 317 367 0 2 1290 335 330 9 26 chr1 92525259 92525374 -104670058 + MTEa-int LTR MaLR 1456 1568 -12 2 1290 594 295 75 11 chr1 92525377 92525658 -104669774 + MTEa LTR MaLR 3 373 -6 2 1290 2309 161 41 29 chr1 92527595 92528011 -104667421 + MTC LTR MaLR 1 421 0 3 1290 865 204 66 115 chr1 92528077 92528426 -104667006 - RMER17C LTR ERVK -78 332 1 3 1290 942 249 46 136 chr1 92528872 92529240 -104666192 + MTEa LTR MaLR 44 378 -1 3 1290 477 0 0 0 chr1 92529554 92529607 -104665825 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1290 585 290 44 0 chr1 92529723 92529906 -104665526 + B4A SINE B4 86 276 -16 3 1290 216 0 0 0 chr1 92529925 92529949 -104665483 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1290 342 0 0 0 chr1 92530571 92530609 -104664823 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1290 567 172 6 37 chr1 92531248 92531411 -104664021 + CT-rich Low_complexity Low_complexity 2 159 0 3 1290 260 333 0 10 chr1 92532387 92532484 -104662948 - L1M5 LINE L1 -666 5574 5479 3 1290 929 172 106 69 chr1 92532662 92532880 -104662552 - URR1A DNA MER1_type 0 226 1 3 1290 775 107 71 0 chr1 92533129 92533241 -104662191 - B3 SINE B2 -95 121 2 4 1290 315 0 0 0 chr1 92533336 92533371 -104662061 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1290 447 326 26 27 chr1 92533521 92533767 -104661665 - L1MA5 LINE L1 -1695 5949 5700 4 1290 252 0 0 0 chr1 92534395 92534423 -104661009 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 4 1290 507 73 0 0 chr1 92534423 92534491 -104660941 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 4 1290 220 70 23 23 chr1 92535370 92535414 -104660018 + (TTA)n Simple_repeat Simple_repeat 3 46 0 4 1290 372 94 0 0 chr1 92535428 92535481 -104659951 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1290 706 246 0 28 chr1 92535483 92535625 -104659807 - RSINE1 SINE B4 -26 139 2 4 1290 535 257 12 122 chr1 92535927 92536091 -104659341 + RSINE1 SINE B4 3 148 -17 4 1290 671 258 0 68 chr1 92536137 92536328 -104659104 + B3A SINE B2 5 182 -16 4 1290 258 267 19 0 chr1 92536332 92536493 -104658939 + (CA)n Simple_repeat Simple_repeat 1 164 0 5 1290 667 184 25 0 chr1 92536584 92536742 -104658690 + (TATG)n Simple_repeat Simple_repeat 4 165 0 5 1291 180 272 33 110 chr1 92538147 92538238 -104657194 + L3 LINE CR1 1625 1708 -2781 5 1291 860 300 65 57 chr1 92538739 92539149 -104656283 - MTE2a LTR MaLR -15 404 1 5 1291 665 280 85 42 chr1 92539526 92539827 -104655605 - MLT1F LTR MaLR -4 676 224 5 1291 607 277 42 26 chr1 92539850 92540043 -104655389 + MTEa LTR MaLR 1 196 -163 5 1291 435 68 0 0 chr1 92540045 92540104 -104655328 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 5 1291 651 260 25 42 chr1 92540104 92540332 -104655100 + MTEa LTR MaLR 149 378 -1 5 1291 247 183 0 40 chr1 92540346 92540420 -104655012 + GA-rich Low_complexity Low_complexity 1 71 0 5 1291 1092 159 124 5 chr1 92540841 92541043 -104654389 - URR1A DNA MER1_type 0 226 1 5 1291 2717 152 16 30 chr1 92542253 92542429 -104653003 - RLTR28 LTR ERVL -2 522 356 5 1291 387 0 0 0 chr1 92542429 92542472 -104652960 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1291 2717 152 16 30 chr1 92542472 92542798 -104652634 - RLTR28 LTR ERVL -169 355 28 5 1291 382 263 169 44 chr1 92544032 92544215 -104651217 + L1M4 LINE L1 1363 1568 -4974 6 1291 282 348 45 0 chr1 92544249 92544338 -104651094 - MER2 DNA MER2_type -45 300 208 6 1291 189 113 36 54 chr1 92544369 92544425 -104651007 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1291 708 217 31 37 chr1 92544443 92544606 -104650826 - RSINE1 SINE B4 0 165 4 6 1291 409 305 78 0 chr1 92544607 92544735 -104650697 - MER2 DNA MER2_type -121 224 87 6 1291 1038 203 18 18 chr1 92544875 92545096 -104650336 - URR1B DNA MER1_type 0 225 5 6 1291 1411 247 82 11 chr1 92546197 92546573 -104648859 + MTD LTR MaLR 3 405 -14 6 1291 198 265 87 48 chr1 92550065 92550168 -104645264 - MIRc SINE MIR -134 134 28 6 1291 485 296 117 33 chr1 92550931 92551144 -104644288 + RMER15 LTR ERVL 327 557 -18 6 1291 551 15 15 0 chr1 92553453 92553521 -104641911 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1291 611 271 123 0 chr1 92553920 92554090 -104641342 + ID_B1 SINE B4 1 191 -33 7 1291 830 243 83 28 chr1 92554114 92554330 -104641102 - ORR1D2 LTR MaLR -142 228 1 7 1291 414 270 30 10 chr1 92554335 92554436 -104640996 - MTEa LTR MaLR -276 103 1 7 1291 1114 228 47 149 chr1 92554580 92555002 -104640430 + MTE2a LTR MaLR 1 379 0 7 1291 252 164 0 43 chr1 92555178 92555248 -104640184 + C-rich Low_complexity Low_complexity 4 70 0 7 1291 234 128 0 0 chr1 92555362 92555401 -104640031 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1291 304 329 53 20 chr1 92555667 92555819 -104639613 - Charlie25 DNA MER1_type -787 1737 1581 7 1291 460 332 93 38 chr1 92556131 92556475 -104638957 - Charlie25 DNA MER1_type -1503 1021 659 7 1291 1345 187 0 4 chr1 92556481 92556707 -104638725 + URR1B DNA MER1_type 1 225 0 7 1291 291 294 17 113 chr1 92556766 92556881 -104638551 + PB1 SINE Alu 24 127 0 7 1291 750 236 59 5 chr1 92556896 92557100 -104638332 + ID_B1 SINE B4 1 215 -9 7 1291 233 183 17 0 chr1 92557102 92557162 -104638270 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 8 1291 344 249 93 130 chr1 92557198 92557329 -104638103 - B1_Mus2 SINE Alu 0 127 1 8 1291 276 331 15 30 chr1 92557329 92557366 -104638066 - ID SINE ID -142 82 48 8 1291 412 285 98 11 chr1 92557370 92557544 -104637888 - L1ME1 LINE L1 -27 6152 5964 8 1291 291 312 92 0 chr1 92557624 92557765 -104637667 - L1ME1 LINE L1 -305 5859 5706 8 1291 229 180 60 0 chr1 92557797 92557847 -104637585 - L1ME1 LINE L1 -562 5617 5565 8 1291 181 232 0 44 chr1 92558669 92558714 -104636718 + MIRb SINE MIR 33 75 -193 8 1291 315 0 0 0 chr1 92559051 92559086 -104636346 + (TGG)n Simple_repeat Simple_repeat 2 36 0 8 1291 1277 241 114 3 chr1 92559965 92560298 -104635134 + ORR1D2 LTR MaLR 1 370 0 8 1291 2075 144 58 44 chr1 92561060 92561237 -104634195 + ORR1B2 LTR MaLR 1 196 -171 8 1291 5977 64 0 5 chr1 92561237 92561987 -104633445 + L1Md_F2 LINE L1 5825 6570 -12 8 1291 2075 144 58 44 chr1 92561987 92562171 -104633261 + ORR1B2 LTR MaLR 197 367 0 8 1291 216 0 0 0 chr1 92562215 92562239 -104633193 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 1291 688 253 159 33 chr1 92562341 92562586 -104632846 + B4 SINE B4 3 278 -14 9 1291 1213 222 78 16 chr1 92564833 92565089 -104630343 - MTEa LTR MaLR -45 334 63 9 1291 979 80 0 0 chr1 92567326 92567451 -104627981 + L1_Mus4 LINE L1 6283 6407 -229 9 1291 11779 108 16 1 chr1 92567449 92569172 -104626260 + L1_Mm LINE L1 3790 5538 -345 9 1291 183 42 0 0 chr1 92569197 92569221 -104626211 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1291 230 258 15 46 chr1 92569714 92569779 -104625653 + MLT1H2 LTR MaLR 67 129 -360 9 1291 471 222 20 0 chr1 92570866 92571019 -104624413 + CT-rich Low_complexity Low_complexity 1 156 0 9 1291 536 302 174 0 chr1 92571024 92571259 -104624173 - B4A SINE B4 -12 280 5 9 1291 414 57 0 0 chr1 92571444 92571497 -104623935 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1291 752 307 54 84 chr1 92573773 92574143 -104621289 - ORR1E LTR MaLR 0 359 1 9 1291 289 322 142 47 chr1 92574295 92574569 -104620863 + ORR1C2 LTR MaLR 85 384 0 1 1291 370 309 210 0 chr1 92575013 92575175 -104620257 - MLT1D LTR MaLR -4 501 306 1 1291 623 275 14 7 chr1 92576328 92576467 -104618965 + RSINE1 SINE B4 4 143 -22 1 1291 402 100 0 0 chr1 92576467 92576527 -104618905 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1291 771 262 110 57 chr1 92576782 92577156 -104618276 - RMER15 LTR ERVL 0 575 61 1 1291 297 68 0 0 chr1 92578016 92578060 -104617372 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1291 595 253 132 0 chr1 92578081 92578255 -104617177 + B3A SINE B2 2 198 0 1 1291 650 247 19 47 chr1 92578396 92578598 -104616834 - MTC LTR MaLR -3 418 208 1 1291 1205 48 0 14 chr1 92578603 92578751 -104616681 - B1_Mus2 SINE Alu -1 146 1 1 1291 435 194 2 0 chr1 92578760 92578849 -104616583 - MTC LTR MaLR -317 90 1 1 1291 2559 34 47 3 chr1 92580879 92581201 -104614231 + RLTR10B2 LTR ERVK 1 336 -29 1 1291 1327 62 2 19 chr1 92581204 92581386 -104614046 + RLTR10-int LTR ERVK 39 267 -7314 1 1291 219 127 36 60 chr1 92581474 92581558 -104613874 + GA-rich Low_complexity Low_complexity 3 84 0 1 1291 380 44 0 0 chr1 92581558 92581603 -104613829 + RLTR10-int LTR ERVK 93 137 -6405 1 1291 2355 19 0 0 chr1 92581606 92581873 -104613559 + RLTR10-int LTR ERVK 652 918 -1069 1 1291 596 306 22 19 chr1 92581911 92582191 -104613241 + RLTR10-int LTR ERVK 822 1063 -5479 1 1291 1611 87 100 0 chr1 92582203 92582432 -104613000 + RLTR10-int LTR ERVK 5004 5255 -1287 1 1291 4378 134 21 4 chr1 92582436 92583111 -104612321 + IAPEY3-int LTR ERVK 6995 7680 0 1 1291 2857 37 29 68 chr1 92583111 92583491 -104611941 + RLTR10B2 LTR ERVK 1 365 0 1 1291 1113 259 81 60 chr1 92583503 92583873 -104611559 + MTEb LTR MaLR 1 378 -1 1 1291 270 0 0 0 chr1 92584570 92584600 -104610832 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1291 317 310 115 8 chr1 92584919 92585049 -104610383 - L2a LINE L2 -4 3422 3279 1 1291 199 345 51 17 chr1 92585192 92585310 -104610122 - L2a LINE L2 -337 3082 2961 1 1291 182 62 31 0 chr1 92585673 92585705 -104609727 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1291 812 213 29 6 chr1 92585705 92585875 -104609557 - MTC LTR MaLR -52 369 196 1 1291 635 94 0 10 chr1 92585878 92585975 -104609457 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 1 1291 1327 70 42 21 chr1 92585975 92586164 -104609268 - B2_Mm2 SINE B2 -1 194 2 1 1291 31 0 0 0 chr1 92586172 92586203 -104609229 + AT_rich Low_complexity Low_complexity 1 31 0 1 1291 1956 22 0 0 chr1 92586226 92586448 -104608984 + L1_Mus1 LINE L1 5589 5810 -757 1 1291 279 274 0 0 chr1 92586455 92586517 -104608915 - Lx8 LINE L1 -232 7241 7180 1 1291 779 242 125 10 chr1 92586590 92586782 -104608650 - ORR1D2 LTR MaLR -13 357 144 1 1291 228 111 0 0 chr1 92586929 92586965 -104608467 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1291 339 236 204 61 chr1 92588948 92589178 -104606254 + L1MCa LINE L1 1603 1865 -4643 1 1291 410 308 180 27 chr1 92589416 92589750 -104605682 + L1MDa LINE L1 23 407 -6226 1 1291 225 267 48 38 chr1 92589772 92589877 -104605555 - Charlie1 DNA MER1_type -2042 739 634 1 1291 1245 176 121 3 chr1 92589939 92590127 -104605305 + Lx9 LINE L1 7286 7504 -140 1 1291 270 0 0 0 chr1 92590127 92590157 -104605275 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1291 1245 176 121 3 chr1 92590157 92590275 -104605157 + Lx9 LINE L1 7505 7628 -16 1 1291 321 358 108 9 chr1 92590457 92590680 -104604752 + L1MDa LINE L1 5278 5522 -1015 1 1291 342 0 0 0 chr1 92590870 92590908 -104604524 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 1 1291 510 150 0 0 chr1 92590917 92590997 -104604435 + B3A SINE B2 2 81 -117 1 1291 339 25 0 0 chr1 92592874 92592914 -104602518 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1291 363 23 0 0 chr1 92593059 92593103 -104602329 + (GGGGA)n Simple_repeat Simple_repeat 5 48 0 1 1291 841 180 66 160 chr1 92593441 92593685 -104601747 + URR1A DNA MER1_type 5 225 -1 1 1291 229 311 54 0 chr1 92593801 92593875 -104601557 + LTR16A1 LTR ERVL 41 118 -338 1 1291 661 327 81 52 chr1 92594138 92594777 -104600655 - L1MC3 LINE L1 -53 7732 7075 1 1291 272 351 43 0 chr1 92594791 92594885 -104600547 - Charlie1 DNA MER1_type -2683 98 1 1 1291 412 377 74 77 chr1 92595472 92595823 -104599609 + LTR16E2 LTR ERVL 100 449 -119 1 1291 227 197 81 103 chr1 92595927 92596013 -104599419 - L2a LINE L2 0 3426 3289 1 1291 490 198 10 10 chr1 92596415 92596512 -104598920 + PB1D10 SINE Alu 10 106 -11 1 1291 493 277 74 78 chr1 92596724 92596994 -104598438 + B4 SINE B4 3 271 -21 1 1291 3664 143 71 42 chr1 92597167 92597826 -104597606 + RLTR33 LTR ERVK 1 678 0 1 1291 306 125 0 0 chr1 92597884 92597932 -104597500 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1291 630 242 12 54 chr1 92597975 92598141 -104597291 - L1_Rod LINE L1 -1686 4161 4003 1 1291 249 220 20 0 chr1 92599654 92599704 -104595728 - RMER30 DNA MER1_type -151 51 1 1 1291 1283 205 105 75 chr1 92600217 92600735 -104594697 - RMER4B LTR ERVK 0 585 17 1 1291 504 0 0 0 chr1 92600940 92600996 -104594436 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1291 381 93 0 0 chr1 92601289 92601343 -104594089 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1 1291 307 333 106 43 chr1 92601908 92602143 -104593289 - LTR16E2 LTR ERVL -40 528 279 1 1291 225 250 0 0 chr1 92602454 92602502 -104592930 + L2 LINE L2 2779 2826 -593 1 1291 226 220 67 17 chr1 92602849 92602909 -104592523 + RMER15 LTR ERVL 410 472 -103 1 1291 987 169 7 3 chr1 92604809 92604980 -104590452 + ORR1D1 LTR MaLR 11 175 -199 1 1291 321 148 12 24 chr1 92604992 92605075 -104590357 + CT-rich Low_complexity Low_complexity 6 87 0 1 1291 960 237 20 16 chr1 92605075 92605308 -104590124 + ORR1C2 LTR MaLR 97 384 0 1 1291 247 267 154 112 chr1 92605352 92605452 -104589980 + L1MC4a LINE L1 6068 6163 -1622 1 1291 451 248 60 26 chr1 92605452 92605568 -104589864 + PB1 SINE Alu 1 120 -7 1 1291 557 246 225 39 chr1 92605568 92605961 -104589471 + L1MC4a LINE L1 6164 6631 -1251 1 1291 300 152 44 22 chr1 92605981 92606116 -104589316 + (TAGA)n Simple_repeat Simple_repeat 1 138 0 1 1291 369 0 0 0 chr1 92606157 92606198 -104589234 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1291 463 311 104 20 chr1 92606198 92606504 -104588928 + L1MC4a LINE L1 6623 6989 -1053 1 1291 293 330 27 0 chr1 92606601 92606713 -104588719 - L1_Mur3 LINE L1 -753 5127 5013 1 1291 566 290 131 62 chr1 92607227 92607532 -104587900 + LTR75 LTR ERVL 3 328 -234 1 1291 338 0 24 0 chr1 92607610 92607652 -104587780 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1291 1103 50 43 0 chr1 92607652 92607791 -104587641 - B1_Mus1 SINE Alu -2 146 2 1 1291 264 341 30 0 chr1 92607859 92607994 -104587438 + ERVL-B4-int LTR ERVL 1037 1175 -4539 1 1291 341 354 0 17 chr1 92608311 92608327 -104587105 + ID_B1 SINE B4 80 189 -32 1 1291 414 312 10 0 chr1 92608327 92608423 -104587009 + B1F1 SINE Alu 15 111 -38 1 1291 1515 287 98 27 chr1 92608432 92609126 -104586306 - ERVL-B4-int LTR ERVL -2378 3336 2594 1 1291 658 265 22 0 chr1 92609187 92609323 -104586109 + RSINE1 SINE B4 8 146 -19 1 1291 234 0 0 0 chr1 92609527 92609553 -104585879 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1291 280 250 13 0 chr1 92609565 92609641 -104585791 + L1MC3 LINE L1 6112 6188 -1597 1 1291 962 298 107 48 chr1 92609918 92610518 -104584914 + L1MC3 LINE L1 6523 7157 -628 1 1291 1118 105 6 0 chr1 92611020 92611192 -104584240 + (TC)n Simple_repeat Simple_repeat 2 174 0 1 1291 274 292 91 48 chr1 92611329 92611516 -104583916 + RLTR42-int LTR ERVK 1148 1342 -4180 1 1291 457 266 19 95 chr1 92611537 92611695 -104583737 + RSINE1 SINE B4 3 148 -17 1 1291 1080 152 25 0 chr1 92612022 92612220 -104583212 - Lx LINE L1 -5 6649 6447 1 1291 284 83 0 20 chr1 92612590 92612639 -104582793 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 1 1291 438 220 54 85 chr1 92613973 92614102 -104581330 + MER21B LTR ERV1 586 710 -153 1 1291 362 329 20 40 chr1 92614297 92614449 -104580983 + ID_B1 SINE B4 75 223 -1 1 1291 1282 275 52 47 chr1 92614589 92615013 -104580419 + Lx8 LINE L1 7047 7472 -1 1 1291 657 290 16 65 chr1 92616021 92616327 -104579105 + B4A SINE B4 2 292 0 1 1291 270 211 0 109 chr1 92616868 92616969 -104578463 - MT2A LTR ERVL 0 533 444 1 1291 435 92 0 0 chr1 92617017 92617082 -104578350 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1291 452 328 60 44 chr1 92617926 92618178 -104577254 - LTR41 LTR ERVL 0 768 513 1 1291 1900 139 77 0 chr1 92618180 92618504 -104576928 + RLTR15 LTR ERVK 1 349 -10 1 1291 581 332 243 2 chr1 92618492 92618682 -104576750 - LTR41 LTR ERVL -229 539 326 1 1291 230 0 33 0 chr1 92618682 92618712 -104576720 + (TGG)n Simple_repeat Simple_repeat 3 33 0 1 1291 581 332 243 2 chr1 92618712 92618953 -104576479 - LTR41 LTR ERVL -443 325 4 1 1291 243 293 12 0 chr1 92619195 92619277 -104576155 + (TTGG)n Simple_repeat Simple_repeat 4 86 0 1 1291 354 129 0 0 chr1 92619286 92619348 -104576084 + (TGGA)n Simple_repeat Simple_repeat 1 62 0 1 1291 282 279 0 0 chr1 92619359 92619495 -104575937 + (GCTG)n Simple_repeat Simple_repeat 4 139 0 1 1291 744 200 0 0 chr1 92619479 92619654 -104575778 + (TTGG)n Simple_repeat Simple_repeat 1 175 0 1 1291 312 264 0 0 chr1 92619668 92619793 -104575639 + (TTGG)n Simple_repeat Simple_repeat 2 126 0 1 1291 269 228 134 52 chr1 92620726 92620823 -104574609 + L1MC3 LINE L1 6707 6811 -974 1 1291 741 251 0 101 chr1 92620828 92621045 -104574387 + B3A SINE B2 3 197 -1 1 1291 376 161 0 0 chr1 92621064 92621126 -104574306 + L1MC3 LINE L1 6797 6858 -927 1 1291 464 306 236 25 chr1 92621267 92621861 -104573571 + L1MC3 LINE L1 7038 7756 -29 1 1291 1304 225 192 9 chr1 92622545 92622873 -104572559 - MTD LTR MaLR -14 405 18 1 1291 270 0 0 0 chr1 92622874 92622904 -104572528 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1291 939 171 145 0 chr1 92623087 92623280 -104572152 + URR1A DNA MER1_type 5 225 -1 1 1291 2118 154 59 5 chr1 92623818 92624191 -104571241 - ORR1B1 LTR MaLR 0 394 2 1 1291 422 368 72 36 chr1 92624309 92624726 -104570706 - Charlie8 DNA MER1_type -1179 1249 818 1 1291 434 70 14 0 chr1 92624820 92624891 -104570541 + (TTTG)n Simple_repeat Simple_repeat 2 73 0 1 1291 945 119 0 0 chr1 92624915 92625066 -104570366 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1291 486 0 0 0 chr1 92625066 92625119 -104570313 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1291 1040 231 205 10 chr1 92625119 92625412 -104570020 + ORR1E LTR MaLR 8 357 -2 1 1291 265 260 91 52 chr1 92625882 92625959 -104569473 + ID4 SINE ID 2 81 -2 1 1291 1342 161 161 90 chr1 92626852 92627206 -104568226 - MTE2a LTR MaLR 0 379 1 1 1291 200 125 49 24 chr1 92627797 92627838 -104567594 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1291 452 280 0 48 chr1 92628443 92628567 -104566865 + B3A SINE B2 6 123 -75 2 1291 483 48 0 0 chr1 92628592 92628654 -104566778 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1291 22 0 0 0 chr1 92628963 92628985 -104566447 + AT_rich Low_complexity Low_complexity 1 22 0 2 1291 271 236 67 40 chr1 92629281 92629356 -104566076 + RSINE1 SINE B4 5 81 -84 2 1291 297 342 9 43 chr1 92630051 92630167 -104565265 + MIR SINE MIR 30 141 -121 2 1291 315 0 0 0 chr1 92630442 92630477 -104564955 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1291 297 0 0 0 chr1 92631326 92631359 -104564073 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1291 1131 49 0 0 chr1 92631359 92631500 -104563932 + (GA)n Simple_repeat Simple_repeat 1 142 0 2 1291 180 274 19 19 chr1 92632147 92632199 -104563233 - L2c LINE L2 -229 3158 3107 2 1291 306 0 0 0 chr1 92632241 92632275 -104563157 + (TGG)n Simple_repeat Simple_repeat 3 36 0 2 1291 333 0 0 0 chr1 92632473 92632510 -104562922 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2 1291 288 0 0 0 chr1 92633641 92633673 -104561759 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1291 273 57 0 0 chr1 92633673 92633708 -104561724 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1291 23 0 0 0 chr1 92633870 92633893 -104561539 + AT_rich Low_complexity Low_complexity 1 23 0 2 1291 519 258 0 70 chr1 92635258 92635387 -104560045 + ID_B1 SINE B4 79 198 -26 2 1291 922 287 9 0 chr1 92635769 92635999 -104559433 + Lx8 LINE L1 7107 7338 -135 2 1291 497 263 193 28 chr1 92636023 92636128 -104559304 - B4A SINE B4 -87 205 81 2 1291 558 41 0 0 chr1 92636128 92636201 -104559231 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1291 497 303 101 19 chr1 92636201 92636271 -104559161 - B4A SINE B4 -211 81 2 2 1291 259 304 86 7 chr1 92637688 92637827 -104557605 + L2 LINE L2 2294 2443 -976 2 1291 357 24 0 0 chr1 92638501 92638543 -104556889 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1291 324 0 0 0 chr1 92638543 92638578 -104556854 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1291 270 158 42 50 chr1 92638862 92638982 -104556450 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 2 1291 288 0 0 0 chr1 92640022 92640054 -104555378 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1291 335 247 0 6 chr1 92640123 92640282 -104555150 + (CA)n Simple_repeat Simple_repeat 1 158 0 2 1291 244 226 0 36 chr1 92640256 92640366 -104555066 + (CATA)n Simple_repeat Simple_repeat 1 106 0 2 1291 450 0 0 0 chr1 92640400 92640450 -104554982 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1291 411 21 0 0 chr1 92640450 92640497 -104554935 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1291 356 216 119 0 chr1 92641194 92641293 -104554139 - MIR SINE MIR -89 179 63 2 1291 441 0 0 0 chr1 92641354 92641403 -104554029 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1291 551 299 160 19 chr1 92641707 92641970 -104553462 - MER21B LTR ERV1 -70 793 494 2 1291 356 385 38 21 chr1 92642431 92642674 -104552758 + B4A SINE B4 45 288 -4 2 1291 207 100 0 0 chr1 92642674 92642704 -104552728 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1291 392 177 35 26 chr1 92643416 92643532 -104551900 + (TATG)n Simple_repeat Simple_repeat 1 117 0 2 1291 467 0 35 0 chr1 92643535 92643593 -104551839 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 2 1291 466 358 28 6 chr1 92643767 92643947 -104551485 - RMER15 LTR ERVL -15 560 377 2 1291 502 284 52 47 chr1 92643955 92644147 -104551285 - Lx8 LINE L1 -235 7238 7046 2 1291 731 285 78 119 chr1 92644346 92644704 -104550728 - MLT1D LTR MaLR 0 505 141 2 1291 734 269 127 12 chr1 92644704 92644949 -104550483 - B4 SINE B4 -18 274 2 2 1291 731 285 78 119 chr1 92644949 92645112 -104550320 - MLT1D LTR MaLR -365 140 5 2 1291 222 37 0 0 chr1 92645896 92645923 -104549509 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 2 1291 459 159 0 93 chr1 92645923 92645936 -104549496 - B1_Mur1 SINE Alu -9 140 131 2 1291 1954 172 37 136 chr1 92645936 92646153 -104549279 - MTC LTR MaLR -2 419 211 2 1291 1051 134 78 0 chr1 92646153 92646332 -104549100 - B2_Mm2 SINE B2 -1 194 2 2 1291 1954 172 37 136 chr1 92646332 92646579 -104548853 - MTC LTR MaLR -211 210 1 2 1291 459 184 2 95 chr1 92646579 92646685 -104548747 - B1_Mur1 SINE Alu -19 130 3 2 1291 316 188 11 34 chr1 92647455 92647543 -104547889 + Lx8 LINE L1 7387 7472 -1 2 1291 25 0 0 0 chr1 92647723 92647748 -104547684 + GC_rich Low_complexity Low_complexity 1 25 0 2 1291 202 291 18 0 chr1 92648227 92648282 -104547150 + MIRc SINE MIR 166 221 -47 2 1291 451 271 8 71 chr1 92648600 92648727 -104546705 + RSINE1 SINE B4 46 164 -1 2 1291 266 228 18 0 chr1 92648728 92648785 -104546647 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1291 855 219 47 5 chr1 92648831 92649024 -104546408 - B3 SINE B2 -15 201 1 2 1291 871 240 70 5 chr1 92649063 92649264 -104546168 - B3 SINE B2 -1 215 2 2 1291 578 143 18 54 chr1 92651713 92651824 -104543608 - PB1D9 SINE Alu -5 115 9 2 1291 619 157 21 0 chr1 92651843 92651983 -104543449 + (CATA)n Simple_repeat Simple_repeat 2 144 0 2 1291 756 211 94 10 chr1 92652580 92652612 -104542820 - B3 SINE B2 -6 210 168 2 1291 288 77 0 0 chr1 92652612 92652651 -104542781 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 1291 756 211 94 10 chr1 92652651 92652810 -104542622 - B3 SINE B2 -49 167 3 2 1291 273 29 0 0 chr1 92656682 92656716 -104538716 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2 1291 1190 245 37 63 chr1 92656737 92657127 -104538305 + MTE2a LTR MaLR 30 405 -14 2 1291 498 209 230 27 chr1 92657212 92657336 -104538096 + Lx8 LINE L1 6998 7152 -321 2 1291 180 0 0 0 chr1 92657336 92657356 -104538076 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 2 1291 498 209 230 27 chr1 92657356 92657418 -104538014 + Lx8 LINE L1 7153 7221 -252 2 1291 196 30 29 29 chr1 92657689 92657723 -104537709 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1291 2425 155 16 0 chr1 92658261 92658649 -104536783 + ORR1B1 LTR MaLR 1 394 0 2 1291 1165 76 0 0 chr1 92658763 92658907 -104536525 + B1_Mus2 SINE Alu 4 147 0 2 1291 345 305 150 41 chr1 92659427 92659673 -104535759 + LTR16C LTR ERVL 210 482 -7 2 1291 2857 174 28 60 chr1 92660027 92660560 -104534872 + RMER20A LTR ERVK 1 516 0 2 1291 521 333 84 22 chr1 92661389 92661711 -104533721 + MLT1C LTR MaLR 46 387 -80 2 1291 2596 129 48 12 chr1 92661705 92662104 -104533328 - MTC LTR MaLR -8 413 1 2 1291 585 0 0 0 chr1 92662703 92662768 -104532664 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1291 580 247 5 33 chr1 92662801 92662971 -104532461 - B3 SINE B2 -6 210 1 2 1291 227 182 35 35 chr1 92664204 92664261 -104531171 + GA-rich Low_complexity Low_complexity 1 57 0 2 1291 187 245 41 0 chr1 92665181 92665230 -104530202 + MIRc SINE MIR 96 146 -122 2 1291 560 228 16 0 chr1 92665566 92665689 -104529743 - B3A SINE B2 -72 126 2 2 1291 356 333 13 34 chr1 92667100 92667249 -104528183 - RSINE1 SINE B4 -19 146 1 2 1291 459 165 0 27 chr1 92667458 92667570 -104527862 + CT-rich Low_complexity Low_complexity 1 109 0 2 1292 1281 205 74 88 chr1 92668140 92668196 -104527236 + ORR1D1 LTR MaLR 11 62 -312 2 1292 3086 101 2 9 chr1 92668196 92668616 -104526816 + MTC LTR MaLR 5 421 0 2 1292 1281 205 74 88 chr1 92668616 92668922 -104526510 + ORR1D1 LTR MaLR 63 368 -6 2 1292 808 152 0 12 chr1 92671101 92671268 -104524164 + GA-rich Low_complexity Low_complexity 3 167 0 2 1292 652 290 49 6 chr1 92671342 92671505 -104523927 - RMER30 DNA MER1_type -1 201 32 2 1292 852 263 123 10 chr1 92671508 92671808 -104523624 + Lx8 LINE L1 6696 7029 -444 2 1292 254 320 0 0 chr1 92672659 92672759 -104522673 + (GCCTG)n Simple_repeat Simple_repeat 4 103 0 2 1292 21 71 0 0 chr1 92673048 92673090 -104522342 + AT_rich Low_complexity Low_complexity 1 42 0 2 1292 276 297 97 102 chr1 92673231 92673255 -104522177 + B4A SINE B4 71 166 -126 2 1292 707 209 37 7 chr1 92673255 92673390 -104522042 + B1F SINE Alu 11 149 0 2 1292 276 297 97 102 chr1 92673390 92673407 -104522025 + B4A SINE B4 167 245 -47 2 1292 908 292 168 16 chr1 92673460 92673725 -104521707 + MLT1H LTR MaLR 117 417 -132 2 1292 324 0 0 0 chr1 92673725 92673761 -104521671 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 2 1292 908 292 168 16 chr1 92673761 92673871 -104521561 + MLT1H LTR MaLR 418 548 -1 2 1292 387 0 0 0 chr1 92675158 92675201 -104520231 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1292 294 330 11 11 chr1 92676145 92676237 -104519195 + PB1D10 SINE Alu 14 105 -12 2 1292 1583 67 0 5 chr1 92679230 92679426 -104516006 + B2_Mm2 SINE B2 1 195 0 2 1292 311 290 14 0 chr1 92680417 92680486 -104514946 + ID4_ SINE ID 12 81 -2 2 1292 259 354 0 0 chr1 92680500 92680582 -104514850 - ID4 SINE ID -1 82 1 2 1292 209 338 27 0 chr1 92682167 92682241 -104513191 - MIR SINE MIR -106 102 27 2 1292 460 252 220 12 chr1 92683434 92683675 -104511757 + L1MA5 LINE L1 5881 6171 -129 2 1292 635 302 0 18 chr1 92683780 92683945 -104511487 + RSINE1 SINE B4 2 163 -2 2 1292 414 134 0 0 chr1 92683947 92684014 -104511418 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 2 1292 525 218 0 29 chr1 92684065 92684169 -104511263 - B1F SINE Alu -48 101 1 2 1292 713 186 0 67 chr1 92684187 92684337 -104511095 - B1_Mur4 SINE Alu -1 149 10 2 1292 669 267 50 18 chr1 92684904 92685200 -104510232 + L1MB7 LINE L1 5718 6016 -343 2 1292 219 69 0 0 chr1 92688014 92688043 -104507389 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1292 336 102 0 0 chr1 92689744 92689793 -104505639 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 1292 594 305 17 63 chr1 92690062 92690237 -104505195 - B3A SINE B2 0 198 32 2 1292 419 0 20 0 chr1 92691709 92691760 -104503672 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1292 189 0 0 0 chr1 92691824 92691845 -104503587 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 2 1292 282 262 70 23 chr1 92692109 92692195 -104503237 - PB1D10 SINE Alu -16 101 12 3 1292 189 0 0 0 chr1 92692644 92692665 -104502767 + (CTCA)n Simple_repeat Simple_repeat 2 22 0 3 1292 2633 127 18 10 chr1 92693419 92693810 -104501622 + ORR1B1 LTR MaLR 1 394 0 3 1292 216 0 0 0 chr1 92694537 92694561 -104500871 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1292 351 0 0 0 chr1 92694561 92694599 -104500833 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1292 426 306 81 0 chr1 92694949 92695073 -104500359 - RSINE1 SINE B4 -29 136 3 3 1292 218 250 11 130 chr1 92695084 92695176 -104500256 - ID4 SINE ID -1 82 2 3 1292 663 260 21 22 chr1 92695451 92695619 -104499813 + B3A SINE B2 1 161 -37 3 1292 435 38 0 0 chr1 92695619 92695672 -104499760 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1292 354 98 0 0 chr1 92695674 92695725 -104499707 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 1292 331 264 66 112 chr1 92695725 92695749 -104499683 + B2_Mm1a SINE B2 161 183 -10 3 1292 1307 134 27 31 chr1 92695784 92696007 -104499425 - URR1A DNA MER1_type 0 226 5 3 1292 228 227 0 0 chr1 92696885 92696929 -104498503 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1292 956 296 88 19 chr1 92696929 92697294 -104498138 + MLT1B LTR MaLR 1 390 0 3 1292 333 185 34 34 chr1 92697316 92697495 -104497937 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1292 279 256 73 0 chr1 92698381 92698463 -104496969 + PB1D10 SINE Alu 23 110 -7 3 1292 292 329 59 0 chr1 92701010 92701095 -104494337 + RSINE1 SINE B4 31 120 -45 3 1292 387 0 0 0 chr1 92701101 92701144 -104494288 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1292 180 0 0 0 chr1 92701707 92701727 -104493705 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1292 309 311 149 0 chr1 92702086 92702247 -104493185 + MER90a LTR ERV1 1 185 -390 3 1292 347 333 101 19 chr1 92702279 92702487 -104492945 + MER90a LTR ERV1 267 491 -123 3 1292 1560 216 123 20 chr1 92702631 92702989 -104492443 + MTD LTR MaLR 25 419 0 3 1292 780 296 92 6 chr1 92703050 92703366 -104492066 - L1M1 LINE L1 -523 5780 5438 3 1292 232 248 125 25 chr1 92703365 92703380 -104492052 + L1_Mur2 LINE L1 5732 5746 -131 3 1292 351 0 0 0 chr1 92703380 92703419 -104492013 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1292 232 248 125 25 chr1 92703419 92703523 -104491909 + L1_Mur2 LINE L1 5747 5862 -15 3 1292 1246 168 0 10 chr1 92703631 92703835 -104491597 + URR1B DNA MER1_type 22 223 -2 3 1292 225 65 0 0 chr1 92703981 92704012 -104491420 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 3 1292 656 24 0 12 chr1 92705262 92705345 -104490087 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 3 1292 525 138 22 77 chr1 92705345 92705526 -104489906 + GA-rich Low_complexity Low_complexity 1 171 0 3 1292 429 121 0 0 chr1 92705880 92705963 -104489469 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1292 216 0 0 0 chr1 92706559 92706583 -104488849 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1292 1675 83 11 77 chr1 92708837 92709098 -104486334 + ORR1A3 LTR MaLR 1 244 -82 3 1292 221 190 69 0 chr1 92709490 92709548 -104485884 + CT-rich Low_complexity Low_complexity 5 66 0 3 1292 1456 254 29 23 chr1 92711045 92711396 -104484036 + MTE2b LTR MaLR 4 356 -23 3 1292 284 190 86 0 chr1 92711449 92711507 -104483925 + MER2 DNA MER2_type 15 77 -268 3 1292 443 317 16 39 chr1 92711576 92711704 -104483728 + MER2 DNA MER2_type 215 339 -6 3 1292 369 43 0 0 chr1 92711788 92711835 -104483597 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1292 180 0 0 0 chr1 92716505 92716525 -104478907 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1292 23 0 0 0 chr1 92720219 92720242 -104475190 + AT_rich Low_complexity Low_complexity 1 23 0 3 1292 182 265 108 39 chr1 92725949 92726051 -104469381 - L4 LINE RTE -276 1753 1645 3 1292 696 107 0 0 chr1 92726340 92726443 -104468989 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 3 1292 227 37 0 0 chr1 92726443 92726470 -104468962 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1292 228 200 0 36 chr1 92726470 92726553 -104468879 + A-rich Low_complexity Low_complexity 2 81 0 3 1292 402 303 14 57 chr1 92727156 92727296 -104468136 + B1F SINE Alu 13 146 -3 3 1292 311 299 0 0 chr1 92727304 92727371 -104468061 + ID2 SINE ID 2 68 -15 3 1292 618 253 19 7 chr1 92727497 92727652 -104467780 - B3 SINE B2 -13 203 47 3 1292 637 94 58 0 chr1 92728783 92728921 -104466511 + CT-rich Low_complexity Low_complexity 1 146 0 3 1292 1108 51 0 0 chr1 92730313 92730450 -104464982 + B1_Mus1 SINE Alu 12 148 0 3 1292 369 0 0 0 chr1 92730450 92730491 -104464941 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1292 252 214 0 0 chr1 92730500 92730556 -104464876 + CT-rich Low_complexity Low_complexity 2 57 0 3 1292 216 200 0 0 chr1 92731000 92731050 -104464382 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1292 1132 254 39 21 chr1 92731054 92731336 -104464096 - B4A SINE B4 0 292 6 3 1292 184 391 36 0 chr1 92732427 92732537 -104462895 - MIRb SINE MIR -118 150 37 3 1292 502 307 35 9 chr1 92733388 92733550 -104461882 + B3A SINE B2 15 188 -7 3 1292 685 250 0 7 chr1 92733551 92733692 -104461740 - B1_Mus2 SINE Alu 0 147 8 3 1292 264 68 33 33 chr1 92733807 92733868 -104461564 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 3 1292 799 119 8 0 chr1 92733876 92733994 -104461438 - B1_Mus1 SINE Alu 0 148 30 3 1292 429 231 19 28 chr1 92734549 92734656 -104460776 + ID_B1 SINE B4 113 218 -6 3 1292 623 288 12 18 chr1 92735808 92735971 -104459461 - ID_B1 SINE B4 0 224 63 3 1292 670 241 62 40 chr1 92737384 92737561 -104457871 + B3A SINE B2 2 182 -16 3 1292 22 35 0 0 chr1 92737568 92737597 -104457835 + AT_rich Low_complexity Low_complexity 1 29 0 3 1292 414 0 0 0 chr1 92738540 92738586 -104456846 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1292 249 188 12 24 chr1 92740577 92740659 -104454773 + CT-rich Low_complexity Low_complexity 1 81 0 3 1292 709 142 75 0 chr1 92740956 92741076 -104454356 - URR1B DNA MER1_type -3 222 94 3 1292 522 282 67 84 chr1 92741137 92741362 -104454070 + B4A SINE B4 26 246 -46 3 1292 678 91 0 0 chr1 92741368 92741467 -104453965 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 3 1292 1035 156 120 0 chr1 92741475 92741667 -104453765 + B3 SINE B2 1 215 -1 3 1292 716 277 70 63 chr1 92742224 92742362 -104453070 - B4A SINE B4 -20 272 121 3 1292 504 0 0 0 chr1 92742362 92742418 -104453014 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1292 716 277 70 63 chr1 92742418 92742549 -104452883 - B4A SINE B4 -172 120 1 3 1292 236 374 17 25 chr1 92742578 92742696 -104452736 - MIR SINE MIR -61 147 31 3 1292 272 243 0 54 chr1 92744170 92744244 -104451188 + MLT1A LTR MaLR 3 72 -302 3 1292 881 318 68 42 chr1 92744354 92744764 -104450668 - MT2A LTR ERVL -98 435 15 3 1292 232 326 155 28 chr1 92744815 92744957 -104450475 + MLT1A LTR MaLR 199 358 -7 3 1292 368 313 173 17 chr1 92744988 92745277 -104450155 + MLT1E3 LTR MaLR 291 624 0 3 1292 893 118 13 7 chr1 92747528 92747682 -104447750 - L1_Mus3 LINE L1 -2 6636 6482 3 1292 230 268 90 30 chr1 92747804 92747904 -104447528 - MLT1A1 LTR MaLR -257 151 46 3 1292 2457 148 5 5 chr1 92748770 92749150 -104446282 - MTC LTR MaLR 0 421 42 3 1292 405 280 81 58 chr1 92749225 92749492 -104445940 + L1MEg LINE L1 727 952 -1555 3 1292 2281 141 13 55 chr1 92749499 92749882 -104445550 + ORR1B2 LTR MaLR 1 367 0 3 1292 280 299 52 0 chr1 92749885 92749982 -104445450 + GA-rich Low_complexity Low_complexity 6 107 0 3 1292 663 229 92 0 chr1 92749985 92750116 -104445316 + B1_Mur1 SINE Alu 1 143 -6 3 1292 604 229 81 27 chr1 92750209 92750357 -104445075 + B3A SINE B2 2 157 -41 3 1292 753 97 32 0 chr1 92750369 92750523 -104444909 + (TCTCTG)n Simple_repeat Simple_repeat 5 163 0 3 1292 2709 161 26 34 chr1 92751132 92751660 -104443772 + RLTR28 LTR ERVL 1 524 0 3 1292 247 220 0 20 chr1 92751673 92751724 -104443708 + MTEb LTR MaLR 317 366 -13 3 1292 447 253 126 59 chr1 92751808 92752047 -104443385 + HAL1 LINE L1 1512 1766 -741 3 1292 387 209 208 42 chr1 92753260 92753380 -104442052 + ID_B1 SINE B4 84 223 -1 3 1292 850 216 41 10 chr1 92753505 92753701 -104441731 + B3 SINE B2 2 203 -13 3 1292 207 214 0 0 chr1 92753715 92753757 -104441675 + (CATA)n Simple_repeat Simple_repeat 1 42 0 3 1292 2565 75 16 0 chr1 92754757 92755079 -104440353 + ORR1A2 LTR MaLR 1 327 0 3 1292 3555 328 59 24 chr1 92756012 92757831 -104437601 + MERVK26-int LTR ERVK 1271 3154 -3765 3 1292 1773 151 181 6 chr1 92758315 92758422 -104437010 - ORR1C2 LTR MaLR 0 384 278 3 1292 351 0 0 0 chr1 92758422 92758461 -104436971 + (CAT)n Simple_repeat Simple_repeat 1 39 0 3 1292 1773 151 181 6 chr1 92758461 92758679 -104436753 - ORR1C2 LTR MaLR -107 277 3 3 1292 389 257 55 79 chr1 92759454 92759619 -104435813 - MTD LTR MaLR 0 379 219 3 1292 687 302 77 13 chr1 92759675 92759910 -104435522 - MTD LTR MaLR -169 250 1 3 1292 1086 101 0 0 chr1 92760572 92760730 -104434702 + (GAAA)n Simple_repeat Simple_repeat 1 158 0 3 1292 1262 276 67 55 chr1 92760730 92761870 -104433562 + L1MB7 LINE L1 4609 5767 -417 3 1292 632 274 30 0 chr1 92761870 92762005 -104433427 + RSINE1 SINE B4 3 141 -24 3 1292 684 243 136 47 chr1 92762022 92762366 -104433066 - MTD LTR MaLR 0 419 10 3 1292 855 169 34 0 chr1 92762496 92762644 -104432788 + MTC LTR MaLR 217 369 -52 3 1292 312 277 11 0 chr1 92762648 92762742 -104432690 + L1MB7 LINE L1 5856 5950 -234 3 1292 257 373 42 0 chr1 92762988 92763106 -104432326 + MIRc SINE MIR 122 244 -24 3 1292 1961 247 71 18 chr1 92765688 92766195 -104429237 + RMER5 LTR ERV1 1 534 0 3 1292 1122 57 0 21 chr1 92766468 92766705 -104428727 + (TG)n Simple_repeat Simple_repeat 1 231 0 3 1292 390 393 49 0 chr1 92768019 92768243 -104427189 - Tigger5 DNA MER2_type -2166 240 6 3 1292 268 362 40 60 chr1 92768444 92768644 -104426788 + MLT1B LTR MaLR 1 196 -309 3 1292 980 221 34 5 chr1 92768647 92768852 -104426580 + B3 SINE B2 5 215 -1 4 1292 328 278 77 118 chr1 92768852 92769072 -104426360 + MLT1B LTR MaLR 157 367 -23 3 1292 1028 281 80 34 chr1 92769179 92769503 -104425929 - MTEb LTR MaLR 0 379 41 4 1292 203 146 0 24 chr1 92770675 92770717 -104424715 + GA-rich Low_complexity Low_complexity 1 41 0 4 1292 537 252 38 30 chr1 92770722 92770853 -104424579 - RSINE1 SINE B4 -31 134 3 4 1292 436 331 6 83 chr1 92771114 92771282 -104424150 + ID_B1 SINE B4 3 157 -67 4 1292 285 263 0 116 chr1 92771187 92771299 -104424133 + MT2B LTR ERVL 151 249 -352 4 1292 477 257 18 0 chr1 92771405 92771522 -104423910 + PB1D7 SINE Alu 1 130 -19 4 1292 330 317 81 25 chr1 92771522 92771559 -104423873 + ID_B1 SINE B4 84 251 -41 4 1292 27 0 0 0 chr1 92771655 92771682 -104423750 + AT_rich Low_complexity Low_complexity 1 27 0 4 1292 277 250 7 34 chr1 92772908 92773057 -104422375 + GA-rich Low_complexity Low_complexity 4 148 0 4 1292 616 333 0 0 chr1 92774215 92774383 -104421049 + B3A SINE B2 1 168 -30 4 1292 460 312 146 25 chr1 92775317 92775557 -104419875 - MLT1A0 LTR MaLR -94 271 3 4 1292 9513 91 18 14 chr1 92775582 92775709 -104419723 - Lx2 LINE L1 0 6997 6884 4 1292 204 40 0 0 chr1 92775709 92775734 -104419698 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 1292 9513 115 14 11 chr1 92775734 92778204 -104417228 - Lx2 LINE L1 -114 6883 4387 4 1292 766 251 63 79 chr1 92778207 92778503 -104416929 + MTD LTR MaLR 7 261 -158 4 1292 222 300 0 39 chr1 92778657 92778761 -104416671 + GA-rich Low_complexity Low_complexity 5 104 0 4 1292 294 282 65 30 chr1 92778777 92778978 -104416454 - RMER17C LTR ERVK -181 229 22 4 1292 248 200 0 0 chr1 92779042 92779087 -104416345 + MTD LTR MaLR 312 356 -63 4 1292 401 300 121 70 chr1 92779275 92779547 -104415885 + ORR1E LTR MaLR 15 300 -59 4 1292 2258 84 58 10 chr1 92779547 92779859 -104415573 - ORR1A2 LTR MaLR 0 327 1 4 1292 396 220 19 0 chr1 92780244 92780403 -104415029 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1292 308 232 37 0 chr1 92780430 92780512 -104414920 + Lx8 LINE L1 7383 7467 -6 4 1292 233 222 9 36 chr1 92780748 92780860 -104414572 + CT-rich Low_complexity Low_complexity 2 110 0 4 1292 581 210 22 22 chr1 92780872 92781196 -104414236 + CT-rich Low_complexity Low_complexity 1 324 0 4 1292 202 182 0 0 chr1 92781295 92781328 -104414104 + polypyrimidine Low_complexity Low_complexity 1 33 0 4 1292 226 219 92 15 chr1 92782540 92782605 -104412827 - L3b LINE CR1 -233 249 180 4 1292 4807 148 32 81 chr1 92782910 92783853 -104411579 - RLTR13D6 LTR ERVK -5 897 1 4 1292 862 153 64 0 chr1 92783867 92784024 -104411408 - ETnERV2-int LTR ERVK -28 5780 5614 4 1292 4347 164 31 29 chr1 92784023 92784858 -104410574 - ETnERV2-int LTR ERVK -575 5233 4397 4 1292 5122 127 89 42 chr1 92784858 92785868 -104409564 - ETnERV2-int LTR ERVK -3921 3485 2428 4 1292 10966 112 67 61 chr1 92785865 92785970 -104409462 - ETnERV2-int LTR ERVK -5321 2085 1984 4 1292 1245 54 7 0 chr1 92785970 92786117 -104409315 + B1_Mus1 SINE Alu 1 148 0 4 1292 10966 112 67 61 chr1 92786117 92787086 -104408346 - ETnERV2-int LTR ERVK -5423 1983 1075 4 1292 513 0 0 0 chr1 92787086 92787143 -104408289 + (TTTCC)n Simple_repeat Simple_repeat 5 61 0 4 1292 10966 112 67 61 chr1 92787143 92787705 -104407727 - ETnERV2-int LTR ERVK -6332 1074 492 4 1292 343 20 59 0 chr1 92787705 92787756 -104407676 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1292 10966 112 67 61 chr1 92787756 92788189 -104407243 - ETnERV2-int LTR ERVK -6915 491 5 4 1292 4724 147 33 82 chr1 92788218 92789152 -104406280 - RLTR13D6 LTR ERVK -14 888 1 4 1292 1441 234 92 31 chr1 92789720 92789898 -104405534 - MTD LTR MaLR -16 403 210 4 1292 1306 184 226 3 chr1 92789898 92790204 -104405228 - ORR1D1 LTR MaLR 0 374 1 4 1292 1441 231 93 28 chr1 92790204 92790414 -104405018 - MTD LTR MaLR -194 225 16 4 1292 405 0 0 0 chr1 92790426 92790471 -104404961 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 1292 286 167 0 0 chr1 92790529 92790577 -104404855 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 4 1292 480 59 0 0 chr1 92790582 92790650 -104404782 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1292 358 307 48 78 chr1 92790746 92790912 -104404520 - MLT1K LTR MaLR -329 266 106 4 1292 627 14 0 0 chr1 92790928 92791000 -104404432 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 4 1292 463 115 46 0 chr1 92791522 92791609 -104403823 + GA-rich Low_complexity Low_complexity 4 94 0 4 1292 664 282 108 0 chr1 92792254 92792449 -104402983 + ID_B1 SINE B4 2 217 -7 4 1292 584 228 0 11 chr1 92792449 92792631 -104402801 + GA-rich Low_complexity Low_complexity 1 180 0 4 1292 342 241 101 22 chr1 92792666 92792755 -104402677 - 5S rRNA rRNA -24 97 2 4 1292 270 0 0 0 chr1 92792851 92792881 -104402551 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1292 423 0 0 0 chr1 92792881 92792927 -104402505 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1292 285 51 0 0 chr1 92793219 92793258 -104402174 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1292 302 330 32 0 chr1 92793838 92793932 -104401500 - Tigger16b DNA Tigger 0 337 241 4 1292 342 0 0 0 chr1 92794464 92794502 -104400930 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 4 1292 1327 237 57 33 chr1 92794604 92794970 -104400462 - MTE2b LTR MaLR -4 375 1 4 1292 397 278 212 30 chr1 92795646 92796017 -104399415 - MLT1H2 LTR MaLR -7 572 143 4 1292 226 282 182 16 chr1 92796152 92796278 -104399154 - MLT1J1 LTR MaLR -176 268 122 4 1292 766 294 128 70 chr1 92796457 92796815 -104398617 + MTE2a LTR MaLR 1 379 0 4 1292 221 366 80 0 chr1 92797312 92797424 -104398008 + MIR SINE MIR 21 141 -121 4 1292 270 56 0 0 chr1 92797683 92797719 -104397713 + (ATTG)n Simple_repeat Simple_repeat 3 38 0 4 1292 306 0 0 0 chr1 92797917 92797951 -104397481 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1292 1766 145 142 16 chr1 92798548 92798871 -104396561 + ORR1B2 LTR MaLR 4 367 0 4 1293 257 256 25 37 chr1 92799304 92799385 -104396047 + CT-rich Low_complexity Low_complexity 3 82 0 4 1293 372 247 25 0 chr1 92799385 92799466 -104395966 - PB1 SINE Alu -15 112 30 4 1293 260 325 108 42 chr1 92799991 92800158 -104395274 + LTR33A LTR ERVL 26 203 -317 4 1293 238 303 43 101 chr1 92800019 92800276 -104395156 + RMER17D2 LTR ERVK 172 413 -396 4 1293 349 343 51 96 chr1 92800471 92800803 -104394629 - LTR16B1 LTR ERVL -163 317 1 4 1293 322 358 103 69 chr1 92801199 92801589 -104393843 - L1ME2 LINE L1 -10 6154 5752 4 1293 410 175 9 0 chr1 92801789 92801903 -104393529 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 1293 324 0 0 0 chr1 92801903 92801939 -104393493 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1293 375 23 0 0 chr1 92801968 92802012 -104393420 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1293 270 0 0 0 chr1 92802012 92802041 -104393391 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1293 300 296 111 72 chr1 92802130 92802283 -104393149 - L1MD2 LINE L1 -199 6160 6002 4 1293 2128 169 46 19 chr1 92802315 92802725 -104392707 - MTC LTR MaLR 0 421 1 4 1293 276 149 0 0 chr1 92806009 92806056 -104389376 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 4 1293 234 291 49 25 chr1 92807792 92807873 -104387559 - MTE2a LTR MaLR -17 362 280 4 1293 323 293 76 29 chr1 92808008 92808217 -104387215 + L1MC4a LINE L1 7377 7599 -443 4 1293 317 217 71 14 chr1 92808247 92808317 -104387115 + ID2 SINE ID 1 74 -9 4 1293 665 151 8 42 chr1 92808370 92808488 -104386944 + B1_Mur1 SINE Alu 10 123 -26 4 1293 240 35 0 0 chr1 92808507 92808536 -104386896 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1293 453 103 0 0 chr1 92808584 92808652 -104386780 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1293 22 0 0 30 chr1 92808846 92808857 -104386575 + AT_rich Low_complexity Low_complexity 1 11 0 4 1293 1460 54 0 31 chr1 92808857 92809048 -104386384 - B2_Mm2 SINE B2 -9 186 2 4 1293 22 0 0 30 chr1 92809048 92809069 -104386363 + AT_rich Low_complexity Low_complexity 1 21 0 4 1293 333 0 0 0 chr1 92809076 92809113 -104386319 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1293 309 51 0 0 chr1 92809113 92809151 -104386281 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1293 483 222 118 8 chr1 92809156 92809283 -104386149 + B4A SINE B4 152 292 0 4 1293 228 250 0 0 chr1 92810086 92810198 -104385234 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 1293 441 204 0 0 chr1 92810252 92810384 -104385048 + (CA)n Simple_repeat Simple_repeat 1 132 0 4 1293 459 201 0 0 chr1 92810438 92810572 -104384860 + (CA)n Simple_repeat Simple_repeat 1 134 0 4 1293 468 167 0 0 chr1 92810626 92810722 -104384710 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1293 604 232 7 44 chr1 92810892 92811027 -104384405 - B1F SINE Alu -19 130 1 4 1293 232 273 154 36 chr1 92811239 92811383 -104384049 + MIR3 SINE MIR 34 175 -33 4 1293 369 0 0 0 chr1 92812192 92812233 -104383199 + (TTG)n Simple_repeat Simple_repeat 1 41 0 4 1293 253 275 11 32 chr1 92812936 92813030 -104382402 + G-rich Low_complexity Low_complexity 6 97 0 4 1293 1582 201 60 83 chr1 92815285 92815671 -104379761 - MTEa LTR MaLR -2 377 1 4 1293 370 271 32 6 chr1 92815699 92815806 -104379626 - PB1D9 SINE Alu -7 113 8 4 1293 369 333 0 0 chr1 92817163 92817271 -104378161 + PB1D10 SINE Alu 9 116 -1 4 1293 1237 249 97 20 chr1 92817711 92818060 -104377372 - MTEa LTR MaLR -1 378 3 4 1293 249 254 17 9 chr1 92819295 92819410 -104376022 + CT-rich Low_complexity Low_complexity 1 116 0 4 1293 394 247 0 0 chr1 92819431 92819508 -104375924 - PB1D10 SINE Alu -19 98 22 4 1293 290 179 48 60 chr1 92819451 92819534 -104375898 - B4A SINE B4 -130 162 81 4 1293 327 102 44 22 chr1 92819555 92819645 -104375787 + (CA)n Simple_repeat Simple_repeat 2 93 0 4 1293 1281 79 16 27 chr1 92820469 92820652 -104374780 + B2_Mm2 SINE B2 1 181 -14 4 1293 1190 199 0 18 chr1 92820666 92820886 -104374546 + B3 SINE B2 1 216 0 4 1293 2383 226 47 98 chr1 92821119 92821866 -104373566 - MTC-int LTR MaLR -548 710 2 4 1293 2439 133 55 18 chr1 92821869 92822267 -104373165 - MTC LTR MaLR -8 413 1 4 1293 449 315 11 62 chr1 92822304 92822480 -104372952 - Tigger7 DNA MER2_type -48 2443 2277 4 1293 1381 278 60 25 chr1 92822483 92823099 -104372333 + L1MB5 LINE L1 5294 5927 -247 4 1293 202 61 61 0 chr1 92823239 92823272 -104372160 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 4 1293 861 141 35 21 chr1 92823283 92823428 -104372004 - B1_Mus2 SINE Alu 0 147 1 4 1293 330 338 139 56 chr1 92823834 92824245 -104371187 + L4 LINE RTE 715 1159 -870 4 1293 1546 160 166 36 chr1 92825782 92825865 -104369567 - ORR1D1 LTR MaLR 0 374 277 4 1293 3248 55 5 2 chr1 92825865 92826264 -104369168 - MTB LTR MaLR 0 400 1 4 1293 1546 160 166 36 chr1 92826264 92826351 -104369081 - ORR1D1 LTR MaLR -98 276 183 4 1293 429 36 0 0 chr1 92826351 92826406 -104369026 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1293 1546 160 166 36 chr1 92826406 92826565 -104368867 - ORR1D1 LTR MaLR -192 182 3 4 1293 207 0 0 0 chr1 92827164 92827187 -104368245 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1293 1123 38 82 6 chr1 92828340 92828499 -104366933 - L1Md_F3 LINE L1 -1 6583 6413 5 1293 2379 50 90 0 chr1 92828926 92829226 -104366206 - ORR1A2 LTR MaLR 0 327 1 5 1293 549 0 0 0 chr1 92832067 92832128 -104363304 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1293 267 330 30 40 chr1 92832283 92832384 -104363048 + PB1D10 SINE Alu 18 117 0 5 1293 207 0 0 0 chr1 92832589 92832612 -104362820 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 5 1293 354 260 40 10 chr1 92832861 92832962 -104362470 - PB1D10 SINE Alu -11 106 3 5 1293 212 0 0 35 chr1 92834014 92834043 -104361389 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 5 1293 463 309 74 13 chr1 92835479 92835790 -104359642 + L1MB2 LINE L1 5806 6135 -36 5 1293 189 107 0 0 chr1 92836921 92836949 -104358483 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1293 926 147 49 64 chr1 92837400 92837603 -104357829 - URR1B DNA MER1_type -2 223 24 5 1293 581 277 9 156 chr1 92838576 92838897 -104356535 + B4 SINE B4 3 276 -16 5 1293 255 308 54 11 chr1 92840666 92840758 -104354674 - MTEb LTR MaLR -3 376 281 5 1293 269 169 17 0 chr1 92841407 92841466 -104353966 + GA-rich Low_complexity Low_complexity 5 64 0 5 1293 441 0 0 0 chr1 92842931 92842980 -104352452 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1293 583 218 30 8 chr1 92843008 92843142 -104352290 - B3A SINE B2 -61 137 1 5 1293 510 165 11 0 chr1 92844465 92844556 -104350876 + B1_Mur2 SINE Alu 58 149 0 5 1293 209 389 0 22 chr1 92844730 92844914 -104350518 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1293 180 111 0 0 chr1 92844969 92844996 -104350436 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 1293 369 0 0 0 chr1 92844998 92845039 -104350393 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1293 552 30 0 0 chr1 92845605 92845671 -104349761 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1293 1452 54 0 0 chr1 92846451 92846864 -104348568 + (TCC)n Simple_repeat Simple_repeat 1 413 0 5 1293 636 272 60 50 chr1 92847476 92847677 -104347755 - B4A SINE B4 -6 286 84 5 1293 389 214 25 16 chr1 92847714 92847830 -104347602 - B1F1 SINE Alu 0 120 1 5 1293 983 146 94 28 chr1 92849888 92850100 -104345332 - URR1A DNA MER1_type 0 226 1 5 1293 308 313 63 78 chr1 92851132 92851239 -104344193 - L1M5 LINE L1 -2964 3182 3081 5 1293 1197 41 0 0 chr1 92851239 92851385 -104344047 - B1_Mm SINE Alu 0 147 2 5 1293 308 313 63 78 chr1 92851385 92851419 -104344013 - L1M5 LINE L1 -3066 3080 3043 5 1293 253 291 90 45 chr1 92852281 92852436 -104342996 - Lx8 LINE L1 -285 7188 7027 5 1293 371 112 24 24 chr1 92852714 92852796 -104342636 + CT-rich Low_complexity Low_complexity 4 85 0 5 1293 414 252 0 0 chr1 92852799 92852914 -104342518 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 1293 249 33 0 0 chr1 92854158 92854188 -104341244 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1293 221 305 0 0 chr1 92854218 92854277 -104341155 - B1_Mus2 SINE Alu -87 60 2 5 1293 414 0 0 0 chr1 92854354 92854400 -104341032 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1293 502 194 33 0 chr1 92855918 92856023 -104339409 + PB1D10 SINE Alu 9 117 0 5 1293 257 0 30 0 chr1 92856368 92856401 -104339031 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1293 507 33 0 0 chr1 92856401 92856461 -104338971 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1293 393 22 0 0 chr1 92856461 92856506 -104338926 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1293 646 232 0 110 chr1 92858544 92858762 -104336670 - B3A SINE B2 -3 195 2 5 1293 429 339 53 0 chr1 92859028 92859211 -104336221 - MLT1C LTR MaLR -61 406 214 5 1293 538 286 132 27 chr1 92859211 92859397 -104336035 + MTD LTR MaLR 1 209 -210 5 1293 435 272 128 62 chr1 92859397 92859671 -104335761 + B4A SINE B4 1 292 0 5 1293 270 347 0 39 chr1 92860215 92860317 -104335115 + ID_B1 SINE B4 79 176 -48 5 1293 408 284 0 0 chr1 92860228 92860330 -104335102 + PB1D10 SINE Alu 7 108 -9 5 1293 242 204 0 0 chr1 92860334 92860383 -104335049 + (CATA)n Simple_repeat Simple_repeat 4 52 0 5 1293 777 126 18 30 chr1 92860967 92861410 -104334022 + (CA)n Simple_repeat Simple_repeat 1 437 0 5 1293 301 257 14 0 chr1 92861791 92861865 -104333567 + PB1D10 SINE Alu 2 76 -41 5 1293 295 254 27 0 chr1 92861902 92862012 -104333420 + GA-rich Low_complexity Low_complexity 2 114 0 5 1293 319 321 74 20 chr1 92862012 92862211 -104333221 + HAL1-3A_ME LINE L1 2284 2444 -414 5 1293 468 176 0 40 chr1 92862220 92862344 -104333088 + GA-rich Low_complexity Low_complexity 2 120 0 5 1293 231 323 10 39 chr1 92863360 92863463 -104331969 + L2a LINE L2 3276 3426 0 5 1293 339 331 30 12 chr1 92863473 92863641 -104331791 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 5 1293 458 236 9 26 chr1 92864716 92864829 -104330603 + PB1D7 SINE Alu 10 120 0 5 1293 865 78 6 25 chr1 92865632 92865789 -104329643 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1293 241 307 13 0 chr1 92867350 92867425 -104328007 - MT2A LTR ERVL -114 419 344 5 1293 847 327 37 40 chr1 92867432 92867782 -104327650 - MT2A LTR ERVL -109 424 76 5 1293 600 339 116 42 chr1 92867777 92868088 -104327344 - MLT1E LTR MaLR -193 460 127 5 1293 369 0 0 0 chr1 92868654 92868695 -104326737 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1293 221 255 20 0 chr1 92868825 92868876 -104326556 + B1F1 SINE Alu 2 53 -96 5 1293 478 241 120 42 chr1 92869170 92869361 -104326071 - B3 SINE B2 -10 206 1 5 1293 285 302 252 0 chr1 92869410 92869529 -104325903 - RSINE1 SINE B4 -12 153 5 5 1293 853 288 24 98 chr1 92872289 92872708 -104322724 - MLT1B LTR MaLR 0 390 3 5 1293 526 239 28 14 chr1 92872884 92873028 -104322404 + B1F SINE Alu 3 148 -1 5 1293 273 337 0 0 chr1 92873027 92873113 -104322319 + PB1D7 SINE Alu 1 86 -34 5 1293 501 17 0 0 chr1 92873398 92873456 -104321976 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1293 321 26 0 0 chr1 92873456 92873494 -104321938 + (CCA)n Simple_repeat Simple_repeat 1 38 0 5 1293 1473 166 81 0 chr1 92873938 92874233 -104321199 + IAPEY3_LTR LTR ERVK 14 332 0 5 1293 987 125 0 210 chr1 92874387 92874630 -104320802 + B2_Mm2 SINE B2 3 194 -1 5 1293 613 257 153 46 chr1 92874643 92874990 -104320442 - RLTR40 LTR ERVK -81 736 353 5 1293 266 0 0 29 chr1 92874990 92875025 -104320407 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1293 758 120 30 8 chr1 92875040 92875174 -104320258 - Lx LINE L1 -7 6647 6511 5 1293 299 284 85 0 chr1 92875178 92875319 -104320113 - L1_Mur3 LINE L1 -552 5328 5176 5 1293 2642 62 0 17 chr1 92875323 92875685 -104319747 - L1Md_F2 LINE L1 -2 6580 6225 5 1293 5298 48 0 0 chr1 92875685 92876350 -104319082 + L1_Mm LINE L1 5219 5883 0 5 1293 939 270 114 16 chr1 92876361 92876439 -104318993 - RLTR40 LTR ERVK -452 365 281 5 1293 468 0 0 0 chr1 92876439 92876491 -104318941 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1293 939 270 114 16 chr1 92876491 92876728 -104318704 - RLTR40 LTR ERVK -537 280 19 5 1293 712 242 30 55 chr1 92876956 92876976 -104318456 - B3A SINE B2 -2 196 181 5 1293 252 0 0 0 chr1 92876976 92877004 -104318428 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 5 1293 712 242 30 55 chr1 92877004 92877184 -104318248 - B3A SINE B2 -18 180 1 5 1293 234 0 0 0 chr1 92877190 92877216 -104318216 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1293 417 278 90 23 chr1 92877839 92878016 -104317416 - L1MEf LINE L1 -377 5785 5597 5 1293 1338 234 58 14 chr1 92878018 92878365 -104317067 + MTEa LTR MaLR 18 379 0 5 1293 426 331 211 28 chr1 92878368 92878991 -104316441 - L1MEf LINE L1 -567 5597 4845 5 1293 407 337 85 89 chr1 92879009 92879165 -104316267 - L1MEf LINE L1 -5143 1099 937 5 1293 676 218 164 19 chr1 92879165 92879324 -104316108 + B3A SINE B2 1 182 -16 5 1293 407 337 85 89 chr1 92879324 92879649 -104315783 - L1MEf LINE L1 -5306 936 621 5 1293 992 201 84 5 chr1 92880134 92880349 -104315083 - MTD LTR MaLR -8 411 180 5 1293 1905 96 60 3 chr1 92880360 92880662 -104314770 + ORR1A2 LTR MaLR 1 319 -8 5 1293 440 234 212 0 chr1 92880656 92880793 -104314639 - MTD LTR MaLR -244 175 10 5 1293 447 19 0 0 chr1 92881329 92881381 -104314051 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1293 2718 46 3 3 chr1 92881405 92881751 -104313681 + ORR1A0 LTR MaLR 1 346 0 5 1293 13502 50 9 6 chr1 92881751 92883538 -104311894 + ORR1A0-int LTR MaLR 1 1792 0 5 1293 2858 32 3 0 chr1 92883538 92883883 -104311549 + ORR1A0 LTR MaLR 1 346 0 5 1293 1203 180 0 19 chr1 92884054 92884269 -104311163 - B3 SINE B2 -5 211 1 5 1293 195 184 0 0 chr1 92884446 92884484 -104310948 + GA-rich Low_complexity Low_complexity 3 40 0 5 1293 261 0 0 0 chr1 92884576 92884605 -104310827 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1293 3449 53 5 0 chr1 92885306 92885740 -104309692 - RLTR10C LTR ERVK 0 436 1 5 1293 31316 11 0 1 chr1 92885740 92890773 -104304659 - MMERVK10C-int LTR ERVK 0 7581 2552 5 1293 360 95 0 0 chr1 92890779 92890842 -104304590 - MMERVK10C-int LTR ERVK -5634 1947 1885 5 1293 305 146 18 0 chr1 92890849 92890904 -104304528 - MMERVK10C-int LTR ERVK -5627 1779 1724 5 1293 619 234 122 48 chr1 92890904 92891279 -104304153 - MMERVK10C-int LTR ERVK -4958 448 318 5 1293 665 197 22 38 chr1 92891367 92891644 -104303788 - MMERVK10C-int LTR ERVK -6629 952 729 5 1293 778 126 0 0 chr1 92891642 92891761 -104303671 - MMERVK10C-int LTR ERVK -7238 343 225 5 1293 225 225 0 0 chr1 92891761 92891801 -104303631 - RLTR27 LTR ERVK -34 275 236 5 1293 1582 11 0 0 chr1 92891801 92891985 -104303447 - MMERVK10C-int LTR ERVK -7397 184 1 5 1293 3644 53 5 0 chr1 92891985 92892419 -104303013 - RLTR10C LTR ERVK 0 436 1 5 1293 2093 150 45 8 chr1 92892482 92892839 -104302593 + ORR1C1 LTR MaLR 1 370 -8 5 1293 237 33 0 0 chr1 92896693 92896723 -104298709 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 5 1293 342 276 10 20 chr1 92897630 92897730 -104297702 + PB1D7 SINE Alu 22 120 0 5 1293 242 261 86 14 chr1 92897839 92897909 -104297523 - L2c LINE L2 -228 3159 3085 5 1293 605 278 87 20 chr1 92900863 92901058 -104294374 - B3 SINE B2 0 216 9 5 1293 3867 180 29 27 chr1 92901141 92901780 -104293652 - RLTR40 LTR ERVK -5 812 173 5 1293 1561 47 10 5 chr1 92901780 92901974 -104293458 - B2_Mm2 SINE B2 0 195 1 5 1293 3867 180 29 27 chr1 92901974 92902071 -104293361 - RLTR40 LTR ERVK -645 172 75 5 1293 223 359 0 0 chr1 92902071 92902135 -104293297 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1293 425 130 13 0 chr1 92902136 92902186 -104293246 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1293 438 20 0 0 chr1 92902186 92902237 -104293195 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1293 425 130 13 0 chr1 92902237 92902263 -104293169 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1293 458 127 14 14 chr1 92902263 92902335 -104293097 - RLTR40 LTR ERVK -744 73 2 5 1293 438 193 0 11 chr1 92903244 92903333 -104292099 - HAL1 LINE L1 -856 1651 1564 6 1293 444 306 18 0 chr1 92904027 92904144 -104291288 - B1F2 SINE Alu -21 128 3 6 1293 180 0 0 0 chr1 92904163 92904183 -104291249 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1293 378 0 0 0 chr1 92904183 92904224 -104291208 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1293 518 282 70 0 chr1 92904225 92904367 -104291065 - RSINE1 SINE B4 -12 153 2 6 1293 564 15 0 0 chr1 92904381 92904446 -104290986 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1293 316 222 0 3 chr1 92904449 92904512 -104290920 - PB1D10 SINE Alu -5 142 51 6 1293 522 340 0 21 chr1 92904565 92904709 -104290723 + B1F2 SINE Alu 1 141 -8 6 1293 241 373 87 19 chr1 92905477 92905638 -104289794 + MER3 DNA MER1_type 29 200 -9 6 1293 292 257 95 0 chr1 92906100 92906174 -104289258 - PB1D10 SINE Alu -36 81 1 6 1293 303 71 0 0 chr1 92906271 92906313 -104289119 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1293 226 311 29 109 chr1 92906370 92906507 -104288925 + ORR1E LTR MaLR 71 196 -163 6 1293 546 385 15 0 chr1 92907027 92907222 -104288210 - MER20 DNA MER1_type -2 217 20 6 1293 243 311 43 22 chr1 92907546 92907638 -104287794 - MLT1A LTR MaLR -15 359 266 6 1293 887 180 178 11 chr1 92908167 92908358 -104287074 - URR1B DNA MER1_type 0 225 3 6 1293 243 0 0 0 chr1 92909808 92909835 -104285597 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1293 242 272 20 80 chr1 92910294 92910394 -104285038 - RLTR25B LTR ERVK -493 535 442 6 1293 780 152 0 0 chr1 92910316 92910434 -104284998 - B1_Mur2 SINE Alu -31 118 1 6 1293 515 250 15 29 chr1 92910434 92910447 -104284985 - ID_B1 SINE B4 -21 198 70 6 1293 207 278 0 18 chr1 92910939 92910994 -104284438 + CT-rich Low_complexity Low_complexity 4 57 0 6 1293 204 302 38 0 chr1 92911201 92911254 -104284178 + MER5A DNA MER1_type 1 55 -134 6 1293 254 256 0 60 chr1 92911369 92911535 -104283897 + (CAT)n Simple_repeat Simple_repeat 2 157 0 6 1293 336 138 16 75 chr1 92912636 92912824 -104282608 + C-rich Low_complexity Low_complexity 3 179 0 6 1293 290 319 69 142 chr1 92912981 92913255 -104282177 - ORR1E LTR MaLR -3 356 103 6 1293 397 157 157 0 chr1 92913475 92913545 -104281887 - ID4 SINE ID -2 81 1 6 1293 341 286 36 54 chr1 92913558 92913669 -104281763 - PB1D10 SINE Alu -8 109 1 6 1293 236 356 39 29 chr1 92913578 92913682 -104281750 - ID_B1 SINE B4 -51 173 69 6 1293 204 40 0 0 chr1 92914489 92914514 -104280918 + (TTA)n Simple_repeat Simple_repeat 2 26 0 6 1293 249 309 151 24 chr1 92914557 92914683 -104280749 + B1F SINE Alu 1 142 -7 6 1293 243 0 0 0 chr1 92914685 92914712 -104280720 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1293 211 189 0 51 chr1 92914788 92914815 -104280617 + RSINE1 SINE B4 54 78 -87 6 1293 1818 72 4 0 chr1 92914815 92915066 -104280366 - BGLII LTR ERVK 0 421 170 6 1293 233 241 86 0 chr1 92915110 92915168 -104280264 + RSINE1 SINE B4 74 136 -29 6 1293 450 0 0 0 chr1 92915170 92915220 -104280212 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6 1293 752 224 31 37 chr1 92915235 92915397 -104280035 + RSINE1 SINE B4 4 164 -1 6 1293 1115 109 0 0 chr1 92915468 92915615 -104279817 + B1_Mus1 SINE Alu 1 147 -1 6 1293 354 273 80 32 chr1 92917106 92917231 -104278201 + ID_B1 SINE B4 93 223 -1 6 1293 312 91 0 0 chr1 92917231 92917275 -104278157 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1293 1496 262 25 87 chr1 92917755 92917952 -104277480 + L1M2 LINE L1 4345 4531 -1612 6 1293 805 202 118 10 chr1 92917952 92918106 -104277326 + B3 SINE B2 1 176 -40 6 1293 521 30 15 0 chr1 92918106 92918173 -104277259 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1293 805 202 118 10 chr1 92918173 92918213 -104277219 + B3 SINE B2 177 216 0 6 1293 1496 262 25 87 chr1 92918213 92918649 -104276783 + L1M2 LINE L1 4532 4939 -1204 6 1293 966 141 0 26 chr1 92918653 92918806 -104276626 + B1_Mur4 SINE Alu 2 150 0 6 1293 510 225 77 12 chr1 92920131 92920299 -104275133 + B3A SINE B2 7 186 -9 6 1293 369 239 0 0 chr1 92920306 92920377 -104275055 + ID SINE ID 3 73 -151 6 1293 290 301 0 12 chr1 92920310 92920394 -104275038 + BC1_Mm scRNA scRNA 7 89 -63 6 1293 410 191 12 0 chr1 92921249 92921333 -104274099 - ORR1D2 LTR MaLR -86 284 200 6 1293 276 30 0 0 chr1 92921337 92921370 -104274062 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1293 761 133 74 8 chr1 92921370 92921491 -104273941 - B1_Mus1 SINE Alu -9 139 11 6 1293 333 272 85 21 chr1 92921500 92921594 -104273838 - ORR1D2 LTR MaLR -163 207 108 6 1293 528 209 26 37 chr1 92921618 92921794 -104273638 - ORR1D2 LTR MaLR -213 146 1 6 1293 260 169 0 44 chr1 92921937 92922005 -104273427 + CT-rich Low_complexity Low_complexity 2 66 0 6 1293 384 22 0 0 chr1 92922054 92922099 -104273333 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 6 1293 4434 239 98 35 chr1 92922208 92922524 -104272908 - ORR1D2-int LTR MaLR -73 1297 994 6 1293 374 87 21 42 chr1 92922524 92922620 -104272812 + (TCTG)n Simple_repeat Simple_repeat 2 95 0 6 1293 4434 232 88 36 chr1 92922620 92923592 -104271840 - ORR1D2-int LTR MaLR -377 993 2 6 1293 1480 198 159 3 chr1 92923593 92923913 -104271519 - ORR1D2 LTR MaLR 0 370 1 6 1293 208 180 20 0 chr1 92923928 92923978 -104271454 + T-rich Low_complexity Low_complexity 1 51 0 6 1293 477 275 9 0 chr1 92924099 92924208 -104271224 + PB1 SINE Alu 13 122 -5 6 1293 850 276 44 25 chr1 92924236 92924440 -104270992 + B4A SINE B4 1 208 -84 6 1293 798 266 28 22 chr1 92924463 92924644 -104270788 + B3A SINE B2 1 182 -16 6 1293 24 32 0 0 chr1 92924660 92924691 -104270741 + AT_rich Low_complexity Low_complexity 1 31 0 6 1293 465 192 0 0 chr1 92924733 92924853 -104270579 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 1293 2114 94 16 26 chr1 92925204 92925509 -104269923 + ORR1A2 LTR MaLR 26 327 0 6 1293 27 29 0 0 chr1 92925825 92925859 -104269573 + AT_rich Low_complexity Low_complexity 1 34 0 6 1293 614 194 0 27 chr1 92925863 92925974 -104269458 + B3 SINE B2 4 111 -105 6 1293 594 312 114 37 chr1 92926274 92926492 -104268940 + MLT1A0 LTR MaLR 3 225 -140 6 1293 2081 122 67 39 chr1 92926492 92926849 -104268583 - ORR1B2 LTR MaLR 0 367 1 6 1293 594 312 114 37 chr1 92926849 92926929 -104268503 + MLT1A0 LTR MaLR 226 324 -41 6 1293 285 29 0 0 chr1 92926932 92926966 -104268466 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1293 346 299 0 58 chr1 92926973 92927076 -104268356 - B4 SINE B4 -16 276 180 6 1293 1518 168 175 0 chr1 92927079 92927376 -104268056 + ORR1B2 LTR MaLR 19 367 0 6 1293 195 220 0 0 chr1 92929654 92929704 -104265728 + CT-rich Low_complexity Low_complexity 1 50 0 6 1294 2572 126 6 0 chr1 92930282 92930647 -104264785 - ORR1B2 LTR MaLR 0 367 1 6 1294 803 254 22 9 chr1 92930678 92930891 -104264541 - B3A SINE B2 0 216 1 6 1294 567 250 0 8 chr1 92930891 92931008 -104264424 - PB1D9 SINE Alu -3 117 2 6 1294 1639 187 10 218 chr1 92931290 92932014 -104263418 + Lx7 LINE L1 7076 7648 -48 6 1294 221 221 0 42 chr1 92932015 92932086 -104263346 + GA-rich Low_complexity Low_complexity 3 70 0 6 1294 398 173 16 64 chr1 92932086 92932215 -104263217 + Lx7 LINE L1 7602 7696 0 6 1294 264 271 90 36 chr1 92932727 92932838 -104262594 - MER50B LTR ERV1 -68 629 513 6 1294 1254 27 7 7 chr1 92932926 92933073 -104262359 - B1_Mm SINE Alu 0 147 1 6 1294 409 297 10 0 chr1 92933150 92933251 -104262181 - RSINE1 SINE B4 -62 103 2 6 1294 1425 55 6 0 chr1 92934935 92935118 -104260314 - L1Md_F2 LINE L1 -8 6574 6391 6 1294 1030 165 249 20 chr1 92935784 92936081 -104259351 + Lx7 LINE L1 6937 7301 -395 6 1294 378 0 0 0 chr1 92936091 92936133 -104259299 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1294 664 266 96 17 chr1 92936249 92936479 -104258953 - B4A SINE B4 -43 249 2 6 1294 371 280 16 78 chr1 92937556 92937684 -104257748 + RSINE1 SINE B4 29 148 -17 6 1294 265 75 0 36 chr1 92937714 92937769 -104257663 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1294 669 298 37 51 chr1 92937888 92938182 -104257250 + B4A SINE B4 3 292 0 6 1294 525 268 60 32 chr1 92938763 92938951 -104256481 - MIR SINE MIR -58 210 1 6 1294 24 67 0 0 chr1 92939378 92939423 -104256009 + AT_rich Low_complexity Low_complexity 1 45 0 6 1294 1057 235 20 0 chr1 92942527 92942731 -104252701 + B3 SINE B2 1 208 -8 6 1294 396 0 0 0 chr1 92943043 92943087 -104252345 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1294 564 235 29 22 chr1 92943125 92943264 -104252168 + B1F SINE Alu 5 144 -5 6 1294 2035 167 65 37 chr1 92943422 92943852 -104251580 - RMER10A LTR ERVL 0 442 1 6 1294 394 318 121 101 chr1 92944270 92944756 -104250676 - RLTR18B LTR ERVK -16 496 1 6 1294 206 290 126 36 chr1 92944904 92944992 -104250440 + MIRc SINE MIR 13 111 -157 6 1294 4212 112 114 6 chr1 92944992 92945674 -104249758 - RMER6A LTR ERVK 0 756 1 6 1294 206 290 126 36 chr1 92945674 92945696 -104249736 + MIRc SINE MIR 112 133 -135 6 1294 200 191 32 11 chr1 92946276 92946371 -104249061 + (CA)n Simple_repeat Simple_repeat 2 98 0 6 1294 438 178 49 6 chr1 92946422 92946586 -104248846 + (CA)n Simple_repeat Simple_repeat 1 171 0 6 1294 387 202 9 108 chr1 92946629 92946740 -104248692 + MT2B LTR ERVL 165 264 -337 6 1294 927 44 0 0 chr1 92946653 92946766 -104248666 + B1_Mm SINE Alu 26 138 -9 6 1294 207 0 0 0 chr1 92946766 92946789 -104248643 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1294 268 247 10 110 chr1 92946971 92947071 -104248361 + MT2B2 LTR ERVL 152 241 -343 6 1294 389 261 0 0 chr1 92946989 92947077 -104248355 + ID_B1 SINE B4 83 170 -54 6 1294 356 262 44 53 chr1 92946992 92947105 -104248327 + PB1D10 SINE Alu 5 116 -1 6 1294 593 186 17 17 chr1 92947521 92947641 -104247791 - B1_Mur2 SINE Alu 0 149 30 6 1294 563 258 31 8 chr1 92947658 92947787 -104247645 - ID_B1 SINE B4 -2 222 91 6 1294 26 64 0 0 chr1 92949989 92950036 -104245396 + GC_rich Low_complexity Low_complexity 1 47 0 7 1294 211 387 18 54 chr1 92950978 92951090 -104244342 - B1_Mus1 SINE Alu -29 119 12 7 1294 332 275 12 113 chr1 92951950 92952118 -104243314 + MER46C DNA MER2_type 27 177 -161 7 1294 354 268 16 74 chr1 92952604 92952725 -104242707 + PB1D10 SINE Alu 1 114 -3 7 1294 255 264 151 14 chr1 92952729 92952802 -104242630 + ID4_ SINE ID 1 83 0 7 1294 666 249 93 0 chr1 92952904 92953097 -104242335 - B3 SINE B2 -5 211 1 7 1294 264 275 11 0 chr1 92953570 92953661 -104241771 + CT-rich Low_complexity Low_complexity 2 93 0 7 1294 226 129 62 41 chr1 92953669 92953766 -104241666 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 7 1294 842 178 0 7 chr1 92955099 92955246 -104240186 + B1_Mur4 SINE Alu 1 146 -4 7 1294 494 184 41 175 chr1 92955376 92955547 -104239885 - B3A SINE B2 -3 195 48 7 1294 1034 128 0 7 chr1 92955559 92955708 -104239724 + B1_Mur4 SINE Alu 2 149 -1 7 1294 603 40 0 0 chr1 92955722 92955796 -104239636 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1294 475 283 78 8 chr1 92955831 92955959 -104239473 - RSINE1 SINE B4 -19 146 10 7 1294 195 42 0 0 chr1 92955964 92955988 -104239444 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 1294 284 273 28 19 chr1 92955992 92956092 -104239340 - PB1D10 SINE Alu -12 108 10 7 1294 297 0 0 0 chr1 92956123 92956156 -104239276 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1294 342 0 0 0 chr1 92956156 92956193 -104239239 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1294 221 300 81 44 chr1 92956502 92956638 -104238794 - MIRm SINE MIR -99 169 29 7 1294 28 0 0 0 chr1 92956801 92956829 -104238603 + AT_rich Low_complexity Low_complexity 1 28 0 7 1294 363 149 95 38 chr1 92956829 92956934 -104238498 - Lx4A LINE L1 0 7058 6948 7 1294 374 257 99 0 chr1 92956947 92957048 -104238384 - PB1D10 SINE Alu -6 111 1 7 1294 268 264 71 85 chr1 92957048 92957125 -104238307 + YREP_Mm Unknown Unknown 317 391 -1421 7 1294 454 342 86 14 chr1 92957412 92957634 -104237798 - RMER15 LTR ERVL 0 575 338 7 1294 526 268 57 0 chr1 92958739 92958862 -104236570 + B4A SINE B4 109 238 -54 7 1294 186 250 0 0 chr1 92961997 92962041 -104233391 + L2c LINE L2 3314 3357 -30 7 1294 571 294 91 88 chr1 92962354 92962833 -104232599 - MLT1E3 LTR MaLR -11 669 76 7 1294 387 206 0 118 chr1 92963480 92963590 -104231842 + PB1D10 SINE Alu 5 101 -16 7 1294 407 218 0 10 chr1 92963672 92963774 -104231658 + (TA)n Simple_repeat Simple_repeat 1 101 0 7 1294 290 299 103 0 chr1 92964479 92964576 -104230856 - Tigger7 DNA MER2_type -58 2433 2327 7 1294 677 282 150 28 chr1 92964579 92964968 -104230464 - Tigger7 DNA MER2_type -2026 465 29 7 1294 907 168 0 32 chr1 92966619 92966773 -104228659 - B1_Mur4 SINE Alu 0 150 2 7 1294 24 0 0 0 chr1 92967244 92967268 -104228164 + AT_rich Low_complexity Low_complexity 1 24 0 7 1294 286 267 67 0 chr1 92967607 92967682 -104227750 - ID4_ SINE ID -2 81 2 7 1294 406 339 58 23 chr1 92968403 92968575 -104226857 - L4 LINE RTE -648 1381 1204 7 1294 243 227 25 51 chr1 92969460 92969539 -104225893 - Lx8 LINE L1 -2 7471 7395 7 1294 582 248 0 39 chr1 92970284 92970414 -104225018 + B1F SINE Alu 23 147 -2 7 1294 350 159 0 14 chr1 92970432 92970502 -104224930 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7 1294 220 271 0 0 chr1 92970533 92970581 -104224851 + PB1D10 SINE Alu 30 77 -40 7 1294 949 100 8 0 chr1 92971803 92971933 -104223499 - B2_Mm2 SINE B2 -30 165 35 7 1294 526 321 86 36 chr1 92971933 92972211 -104223221 - RMER5 LTR ERV1 -163 371 80 7 1294 984 130 214 16 chr1 92972240 92972427 -104223005 - URR1A DNA MER1_type -1 225 2 7 1294 21 0 0 0 chr1 92975323 92975344 -104220088 + AT_rich Low_complexity Low_complexity 1 21 0 7 1294 749 236 122 74 chr1 92976083 92976353 -104219079 + B4 SINE B4 2 284 -8 7 1294 371 244 26 0 chr1 92976467 92976545 -104218887 - ID4 SINE ID -2 81 2 7 1294 498 234 0 105 chr1 92977737 92977861 -104217571 + RSINE1 SINE B4 18 128 -37 7 1294 264 30 0 0 chr1 92980028 92980061 -104215371 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1294 291 327 119 53 chr1 92980599 92980825 -104214607 + CYRA11_Mm Unknown Y-chromosome 144 384 -233 7 1294 901 147 137 64 chr1 92980623 92980827 -104214605 - URR1B DNA MER1_type -6 219 1 7 1294 261 0 0 0 chr1 92981321 92981350 -104214082 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1294 29 0 0 0 chr1 92982281 92982310 -104213122 + AT_rich Low_complexity Low_complexity 1 29 0 7 1294 237 65 0 0 chr1 92982349 92982380 -104213052 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1294 288 0 0 0 chr1 92982380 92982411 -104213021 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1294 210 71 0 0 chr1 92983245 92983273 -104212159 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 7 1294 1120 215 5 9 chr1 92984357 92984573 -104210859 + B3 SINE B2 1 215 -1 7 1294 21 36 0 0 chr1 92984580 92984608 -104210824 + AT_rich Low_complexity Low_complexity 1 28 0 7 1294 29 0 0 0 chr1 92985592 92985621 -104209811 + AT_rich Low_complexity Low_complexity 1 29 0 7 1294 733 157 67 0 chr1 92986150 92986284 -104209148 - B1_Mur4 SINE Alu -5 145 3 7 1294 463 332 47 99 chr1 92986322 92986666 -104208766 - MER2B DNA MER2_type -1 335 10 7 1294 213 302 52 60 chr1 92989335 92989469 -104205963 - L2c LINE L2 -1 3386 3254 7 1294 216 324 14 0 chr1 92990238 92990309 -104205123 + C-rich Low_complexity Low_complexity 5 76 0 7 1294 213 329 129 0 chr1 92990990 92991060 -104204372 - B4A SINE B4 -123 169 91 7 1294 721 173 0 13 chr1 92991085 92991243 -104204189 + CT-rich Low_complexity Low_complexity 1 156 0 7 1294 434 174 11 44 chr1 92991251 92991341 -104204091 - B4 SINE B4 -205 87 1 7 1294 493 295 6 80 chr1 92991349 92991511 -104203921 - ID_B1 SINE B4 -21 203 54 7 1294 288 0 0 0 chr1 92991850 92991882 -104203550 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 7 1294 469 255 124 38 chr1 92993542 92993846 -104201586 + MTD LTR MaLR 5 378 -41 7 1294 460 301 53 0 chr1 92994422 92994555 -104200877 + B1F SINE Alu 3 142 -7 7 1294 535 266 62 20 chr1 92994563 92994709 -104200723 + RSINE1 SINE B4 3 154 -11 7 1294 398 298 10 0 chr1 92995166 92995270 -104200162 - PB1D10 SINE Alu -10 107 3 7 1294 339 25 0 0 chr1 92997000 92997040 -104198392 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 1294 570 276 8 0 chr1 92997483 92997606 -104197826 + B4A SINE B4 1 124 -168 7 1294 302 250 126 103 chr1 92997606 92997657 -104197775 + B3A SINE B2 1 178 -20 7 1294 414 39 0 0 chr1 92999066 92999118 -104196314 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1294 432 263 103 22 chr1 92999129 92999265 -104196167 - B3A SINE B2 -51 147 1 7 1294 1075 210 24 5 chr1 92999305 92999511 -104195921 - B3 SINE B2 -6 210 1 7 1294 369 62 0 0 chr1 92999721 92999769 -104195663 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1294 846 236 236 0 chr1 93001330 93001567 -104193865 - MTE2b LTR MaLR 0 379 87 1 1294 633 255 0 117 chr1 93001953 93002065 -104193367 - B3A SINE B2 0 198 106 2 1294 1124 147 101 14 chr1 93002065 93002272 -104193160 + URR1A DNA MER1_type 2 226 0 3 1294 633 255 0 117 chr1 93002272 93002381 -104193051 - B3A SINE B2 -93 105 3 2 1294 189 0 0 0 chr1 93002393 93002414 -104193018 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1294 253 234 33 0 chr1 93002484 93002551 -104192881 + B1F1 SINE Alu 7 77 -72 5 1294 378 297 18 26 chr1 93002634 93002748 -104192684 + B4 SINE B4 95 207 -85 6 1294 630 276 30 30 chr1 93002753 93002951 -104192481 + B3A SINE B2 1 198 0 7 1294 226 294 112 6 chr1 93003067 93003093 -104192339 - RLTR21 LTR ERVK -318 1254 1227 8 1294 261 0 0 0 chr1 93003093 93003122 -104192310 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1294 226 294 112 6 chr1 93003122 93003256 -104192176 - RLTR21 LTR ERVK -346 1226 1078 8 1294 238 294 64 47 chr1 93003224 93003395 -104192037 - Charlie22a DNA MER1_type -125 366 193 1 1294 291 254 81 41 chr1 93004006 93004129 -104191303 - MLT1A0 LTR MaLR 0 365 238 1 1294 279 305 165 30 chr1 93004387 93004617 -104190815 + MLT1D LTR MaLR 91 351 -154 1 1294 318 26 0 0 chr1 93005836 93005875 -104189557 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1294 195 42 0 0 chr1 93005875 93005898 -104189534 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1294 753 284 89 74 chr1 93005969 93006239 -104189193 + B4 SINE B4 11 284 -8 1 1294 387 155 200 30 chr1 93006413 93006513 -104188919 + PB1D9 SINE Alu 2 118 -2 1 1294 388 216 0 0 chr1 93006578 93006652 -104188780 + ID4 SINE ID 5 78 -5 1 1294 25 0 0 0 chr1 93006872 93006897 -104188535 + GC_rich Low_complexity Low_complexity 1 25 0 1 1294 3323 53 2 5 chr1 93007586 93007983 -104187449 + MTA_Mm LTR MaLR 1 396 0 1 1294 1348 63 0 22 chr1 93008230 93008408 -104187024 - B2_Mm2 SINE B2 -20 175 2 2 1294 251 111 0 22 chr1 93008398 93008444 -104186988 + 5S rRNA rRNA 2 46 -75 2 1294 220 224 0 0 chr1 93009099 93009148 -104186284 + T-rich Low_complexity Low_complexity 1 49 0 2 1294 725 156 0 11 chr1 93010886 93011068 -104184364 + CT-rich Low_complexity Low_complexity 1 180 0 2 1294 288 70 0 0 chr1 93012096 93012139 -104183293 + (GAA)n Simple_repeat Simple_repeat 3 45 0 2 1294 22 56 0 0 chr1 93013364 93013400 -104182032 + AT_rich Low_complexity Low_complexity 1 36 0 2 1294 22 0 0 0 chr1 93013463 93013485 -104181947 + AT_rich Low_complexity Low_complexity 1 22 0 2 1294 967 73 0 116 chr1 93014222 93014377 -104181055 + B2_Mm2 SINE B2 1 137 -58 2 1294 2209 234 98 23 chr1 93017135 93017777 -104177655 - Lx8 LINE L1 0 7473 6784 2 1294 237 108 0 0 chr1 93018214 93018251 -104177181 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1294 243 0 0 0 chr1 93018353 93018380 -104177052 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1294 535 266 82 133 chr1 93018380 93018471 -104176961 + B4A SINE B4 108 214 -78 3 1294 267 31 0 0 chr1 93018471 93018503 -104176929 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1294 535 266 82 133 chr1 93018503 93018606 -104176826 + B4A SINE B4 215 292 0 3 1294 1201 176 13 18 chr1 93019821 93020047 -104175385 - URR1A DNA MER1_type 0 226 2 3 1294 900 251 56 22 chr1 93020082 93020314 -104175118 + B4A SINE B4 43 282 -10 3 1294 800 189 12 50 chr1 93020373 93020534 -104174898 - ID_B1 SINE B4 0 224 70 3 1294 603 259 218 17 chr1 93020678 93020917 -104174515 + B4 SINE B4 6 292 0 3 1294 2132 97 25 40 chr1 93020954 93021162 -104174270 - ORR1A2 LTR MaLR -8 319 115 3 1294 1181 75 0 0 chr1 93021162 93021309 -104174123 + B1_Mus2 SINE Alu 1 147 0 3 1294 2132 97 25 40 chr1 93021309 93021424 -104174008 - ORR1A2 LTR MaLR -213 114 1 3 1294 320 340 31 0 chr1 93021623 93021720 -104173712 - PB1D10 SINE Alu -17 100 1 3 1294 221 246 154 0 chr1 93021908 93021973 -104173459 - B4 SINE B4 -191 101 27 4 1294 262 0 0 50 chr1 93022981 93023021 -104172411 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1294 200 94 31 0 chr1 93023021 93023053 -104172379 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 1294 1210 61 0 0 chr1 93023053 93023201 -104172231 - B1_Mus1 SINE Alu 0 148 1 4 1294 922 256 39 10 chr1 93024249 93024454 -104170978 + B3 SINE B2 6 216 0 4 1294 421 260 57 64 chr1 93025532 93025552 -104169880 - RMER21B LTR ERV1 -343 604 586 4 1294 796 183 133 11 chr1 93025552 93025740 -104169692 - B3 SINE B2 -5 211 1 4 1294 457 196 43 27 chr1 93025740 93025859 -104169573 - RMER21B LTR ERV1 -378 464 347 4 1294 674 86 47 9 chr1 93026656 93026762 -104168670 + B1_Mur4 SINE Alu 41 150 0 4 1294 735 265 107 16 chr1 93026859 93027112 -104168320 + B4A SINE B4 1 276 -16 4 1294 2873 12 3 0 chr1 93027128 93027449 -104167983 + RLTRETN_Mm LTR ERVK 1 322 0 4 1294 41199 34 6 6 chr1 93027449 93032296 -104163136 + MMETn-int LTR ERVK 1 4844 0 4 1294 2727 44 3 0 chr1 93032296 93032617 -104162815 + RLTRETN_Mm LTR ERVK 1 322 0 4 1294 646 195 146 0 chr1 93032714 93032837 -104162595 - B1_Mur1 SINE Alu -8 141 1 5 1294 1775 231 55 27 chr1 93032931 93033443 -104161989 - RLTR11A2 LTR ERVK -1 526 1 5 1294 261 247 77 66 chr1 93034532 93034623 -104160809 + Tigger11a DNA MER2_type 121 212 -523 5 1294 1195 235 22 26 chr1 93035211 93035356 -104160076 - B4 SINE B4 -16 276 134 5 1294 453 36 0 0 chr1 93035356 93035411 -104160021 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1294 1195 235 22 26 chr1 93035411 93035532 -104159900 - B4 SINE B4 -159 133 12 5 1294 478 269 46 19 chr1 93035548 93035752 -104159680 + L1_Rod LINE L1 5470 5646 -234 5 1294 269 327 86 40 chr1 93035919 93036094 -104159338 - Charlie5 DNA MER1_type -735 1889 1707 5 1294 806 121 57 0 chr1 93036093 93036217 -104159215 + RLTR10B2 LTR ERVK 232 362 -3 5 1294 768 207 0 22 chr1 93036249 93036387 -104159045 - B1_Mur4 SINE Alu -10 140 6 5 1294 637 278 197 53 chr1 93036424 93036891 -104158541 - Charlie5 DNA MER1_type -1251 1373 840 5 1294 403 284 124 16 chr1 93036966 93037026 -104158406 + RSINE1 SINE B4 18 77 -88 5 1294 2260 131 21 90 chr1 93037026 93037447 -104157985 - ORR1B1 LTR MaLR 0 394 3 6 1294 403 284 124 16 chr1 93037447 93037515 -104157917 + RSINE1 SINE B4 78 160 -5 5 1294 221 271 0 0 chr1 93037530 93037578 -104157854 + PB1 SINE Alu 78 125 -2 6 1294 602 267 20 7 chr1 93037580 93037727 -104157705 + B1_Mur3 SINE Alu 1 149 0 6 1294 248 360 0 0 chr1 93037733 93037808 -104157624 + B1_Mus1 SINE Alu 1 75 -73 6 1294 3045 67 24 14 chr1 93037808 93038233 -104157199 - Lx3_Mus LINE L1 -644 6365 5937 6 1294 4502 65 79 11 chr1 93038233 93038841 -104156591 + Lx3_Mus LINE L1 6361 7009 0 6 1294 610 152 10 20 chr1 93038869 93038970 -104156462 + B1_Mus2 SINE Alu 41 140 -7 6 1294 320 274 14 0 chr1 93039023 93039096 -104156336 + ID4 SINE ID 3 76 -7 6 1294 306 281 0 12 chr1 93039108 93039191 -104156241 - Charlie5 DNA MER1_type -1784 840 759 5 1294 289 289 200 9 chr1 93039199 93039314 -104156118 - MLT1F2 LTR MaLR -1 559 423 6 1294 852 97 0 0 chr1 93039469 93039593 -104155839 + (GGGA)n Simple_repeat Simple_repeat 3 126 0 6 1294 733 247 42 20 chr1 93040634 93040852 -104154580 + B3A SINE B2 1 212 -4 6 1294 604 224 122 96 chr1 93040873 93040903 -104154529 - MER96B DNA hAT -66 351 332 7 1294 1233 41 0 26 chr1 93040903 93040916 -104154516 - B1_Mus1 SINE Alu 0 148 139 7 1294 185 0 40 0 chr1 93040916 93040941 -104154491 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1294 1233 41 0 26 chr1 93040941 93041079 -104154353 - B1_Mus1 SINE Alu -10 138 1 7 1294 604 224 122 96 chr1 93041079 93041383 -104154049 - MER96B DNA hAT -86 331 8 7 1294 340 171 0 14 chr1 93041948 93042019 -104153413 - ID4 SINE ID -9 74 5 7 1294 268 292 56 0 chr1 93042286 93042375 -104153057 - L1M5 LINE L1 -2596 3550 3457 7 1294 568 253 78 11 chr1 93042494 93042673 -104152759 - B3A SINE B2 -5 188 4 7 1294 225 233 0 131 chr1 93042767 93042851 -104152581 - ID4_ SINE ID -10 73 1 7 1294 248 206 108 36 chr1 93042898 93043009 -104152423 - L1M5 LINE L1 -3212 2934 2816 7 1294 447 228 104 59 chr1 93043011 93043146 -104152286 - B1F2 SINE Alu -2 147 7 7 1294 319 321 126 49 chr1 93043186 93043409 -104152023 + L1MEc LINE L1 99 338 -6062 7 1294 284 299 0 0 chr1 93043432 93043499 -104151933 - ID4 SINE ID -2 81 15 7 1294 2195 137 80 43 chr1 93044565 93044625 -104150807 + MTC LTR MaLR 1 60 -361 8 1294 1177 68 7 0 chr1 93044625 93044772 -104150660 - B1_Mus1 SINE Alu 0 148 1 8 1294 2195 137 80 43 chr1 93044772 93045109 -104150323 + MTC LTR MaLR 61 413 -8 8 1294 369 0 0 0 chr1 93045691 93045732 -104149700 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1294 1423 188 94 34 chr1 93045737 93045763 -104149669 + ORR1C1 LTR MaLR 29 52 -315 8 1294 312 306 45 83 chr1 93045763 93045920 -104149512 - RSINE1 SINE B4 -12 153 3 8 1294 1540 152 87 12 chr1 93045920 93046213 -104149219 + ORR1C1 LTR MaLR 53 378 0 8 1294 494 293 119 15 chr1 93046320 93046521 -104148911 + ID_B1 SINE B4 3 224 0 8 1294 936 109 0 42 chr1 93047021 93047164 -104148268 + B1_Mus1 SINE Alu 2 138 -10 8 1294 808 287 83 37 chr1 93048255 93048555 -104146877 - MLT1A LTR MaLR -15 359 46 8 1294 42 36 0 0 chr1 93051028 93051084 -104144348 + AT_rich Low_complexity Low_complexity 1 56 0 8 1294 424 236 126 9 chr1 93051229 93051340 -104144092 - RSINE1 SINE B4 -36 129 6 8 1294 862 223 0 0 chr1 93051718 93051866 -104143566 + B1_Mus1 SINE Alu 1 148 0 9 1294 546 211 23 47 chr1 93052286 93052415 -104143017 + B1F2 SINE Alu 24 149 0 9 1294 2210 83 8 127 chr1 93052418 93052500 -104142932 - ORR1A2 LTR MaLR 0 327 271 9 1294 1253 20 0 7 chr1 93052500 93052647 -104142785 - B1_Mm SINE Alu 0 147 2 9 1294 2210 83 8 127 chr1 93052647 93052935 -104142497 - ORR1A2 LTR MaLR -57 270 1 9 1294 426 276 109 99 chr1 93053904 93054125 -104141307 - B4 SINE B4 -15 277 55 9 1294 293 275 54 21 chr1 93054120 93054213 -104141219 - B4 SINE B4 -166 126 31 9 1294 11809 102 19 3 chr1 93054475 93057008 -104138424 - L1_Mus4 LINE L1 0 6636 4057 9 1294 320 319 0 42 chr1 93057337 93057432 -104138000 + PB1D10 SINE Alu 17 107 -10 9 1294 1215 68 0 0 chr1 93057654 93057802 -104137630 + B1_Mus1 SINE Alu 1 148 0 9 1294 218 196 132 38 chr1 93057989 93058042 -104137390 + ID4 SINE ID 26 83 0 9 1294 768 253 6 18 chr1 93058142 93058307 -104137125 - RSINE1 SINE B4 -2 163 1 1 1294 674 168 44 0 chr1 93059159 93059272 -104136160 + B1_Mur2 SINE Alu 5 122 -27 1 1294 458 264 78 0 chr1 93059272 93059288 -104136144 + ID_B1 SINE B4 86 224 0 1 1294 180 315 185 0 chr1 93060230 93060322 -104135110 + MIR SINE MIR 45 153 -109 1 1294 498 209 27 54 chr1 93060967 93061078 -104134354 - PB1D10 SINE Alu 0 117 10 1 1294 409 255 82 0 chr1 93060997 93061095 -104134337 - ID_B1 SINE B4 -50 174 69 1 1295 619 242 83 8 chr1 93061137 93061270 -104134162 - RSINE1 SINE B4 -1 164 22 1 1295 457 312 44 9 chr1 93061282 93061395 -104134037 + RSINE1 SINE B4 49 165 0 1 1295 249 331 114 7 chr1 93062012 93062152 -104133280 + MIR SINE MIR 3 157 -105 1 1295 381 70 0 0 chr1 93062296 93062353 -104133079 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 1 1295 540 0 0 0 chr1 93062356 93062416 -104133016 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1295 306 326 22 0 chr1 93062850 93062942 -104132490 - L1M5 LINE L1 -1079 5067 4974 1 1295 311 197 96 27 chr1 93063116 93063189 -104132243 + MT2B LTR ERVL 177 254 -347 1 1295 531 131 141 0 chr1 93063126 93063225 -104132207 + B1_Mur2 SINE Alu 37 149 0 1 1295 358 246 128 26 chr1 93063225 93063243 -104132189 + B4 SINE B4 122 250 -42 1 1295 285 257 67 50 chr1 93063815 93063934 -104131498 + RMER12 LTR ERVK 733 853 -469 1 1295 909 130 58 0 chr1 93063941 93064079 -104131353 - B1_Mus1 SINE Alu -2 146 1 1 1295 527 0 16 0 chr1 93064081 93064144 -104131288 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1 1295 332 340 55 91 chr1 93065797 93066082 -104129350 - ORR1E LTR MaLR -21 358 66 1 1295 840 188 0 40 chr1 93066375 93066525 -104128907 + B1_Mur4 SINE Alu 2 145 -5 1 1295 291 114 0 0 chr1 93067820 93067864 -104127568 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1295 210 314 0 0 chr1 93068448 93068518 -104126914 + CT-rich Low_complexity Low_complexity 3 72 0 1 1295 951 187 53 39 chr1 93068847 93069053 -104126379 + B3 SINE B2 2 210 -6 1 1295 1491 67 0 25 chr1 93069147 93069347 -104126085 + B2_Mm2 SINE B2 1 195 0 1 1295 216 250 0 48 chr1 93069787 93069850 -104125582 + ID4_ SINE ID 16 75 -8 1 1295 459 312 91 24 chr1 93070026 93070279 -104125153 + MLT1D LTR MaLR 203 472 -33 1 1295 244 298 107 0 chr1 93070309 93070393 -104125039 - MTE2a LTR MaLR -10 369 277 1 1295 3825 143 166 84 chr1 93070393 93071263 -104124169 + RMER21A LTR ERV1 1 941 -6 1 1295 487 266 102 0 chr1 93071277 93071405 -104124027 - MTE2a LTR MaLR -98 281 141 1 1295 369 0 0 0 chr1 93071405 93071446 -104123986 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1295 343 227 0 0 chr1 93071459 93071525 -104123907 - B3 SINE B2 -103 113 48 1 1295 376 316 122 9 chr1 93071958 93072172 -104123260 - L1MC4a LINE L1 -1418 6464 6227 1 1295 613 226 96 49 chr1 93072172 93072321 -104123111 - B1_Mur1 SINE Alu 0 150 9 1 1295 409 301 62 88 chr1 93072190 93072327 -104123105 - B4 SINE B4 -69 223 92 1 1295 315 0 0 0 chr1 93072327 93072362 -104123070 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1295 409 301 62 88 chr1 93072362 93072384 -104123048 - B4 SINE B4 -201 91 68 1 1295 791 178 7 0 chr1 93072378 93072513 -104122919 - B1_Mur3 SINE Alu 0 149 14 1 1295 441 0 0 0 chr1 93073025 93073074 -104122358 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1295 256 282 25 75 chr1 93074239 93074325 -104121107 + RLTR41 LTR ERV1 251 333 -113 1 1295 1014 91 0 0 chr1 93074325 93074468 -104120964 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 1 1295 256 282 25 75 chr1 93074468 93074542 -104120890 + RLTR41 LTR ERV1 334 403 -43 1 1295 425 264 26 62 chr1 93079737 93079850 -104115582 + PB1D10 SINE Alu 3 111 -6 1 1295 398 294 80 14 chr1 93080213 93080351 -104115081 + MER2 DNA MER2_type 141 287 -58 1 1295 411 206 159 0 chr1 93080334 93080387 -104115045 - RMER4B LTR ERVK -461 124 72 1 1295 360 0 0 0 chr1 93080387 93080427 -104115005 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1295 411 206 159 0 chr1 93080427 93080480 -104114952 - RMER4B LTR ERVK -514 71 3 1 1295 793 189 8 15 chr1 93080642 93080776 -104114656 + B1_Mur3 SINE Alu 3 135 -14 1 1295 194 0 39 0 chr1 93080776 93080802 -104114630 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1295 463 281 28 116 chr1 93080802 93080839 -104114593 + MT2B LTR ERVL 285 316 -285 1 1295 290 276 206 15 chr1 93080905 93081041 -104114391 - MER53 DNA hAT -19 174 13 1 1295 542 314 13 25 chr1 93081765 93081922 -104113510 - RSINE1 SINE B4 0 165 11 1 1295 415 350 99 56 chr1 93082741 93082974 -104112458 + Tigger5 DNA MER2_type 1 243 -2163 1 1295 1701 239 47 13 chr1 93082952 93083334 -104112098 - MTD LTR MaLR -23 396 2 1 1295 383 278 79 150 chr1 93083350 93083617 -104111815 - ORR1E LTR MaLR -20 339 92 1 1295 1367 321 35 33 chr1 93084772 93085065 -104110367 - MT2A LTR ERVL -4 529 228 1 1295 198 0 0 0 chr1 93085065 93085087 -104110345 + (CAG)n Simple_repeat Simple_repeat 3 24 0 1 1295 1367 321 35 33 chr1 93085087 93085308 -104110124 - MT2A LTR ERVL -306 227 14 1 1295 428 302 162 9 chr1 93085331 93085658 -104109774 - L1MB3 LINE L1 -50 6133 5757 1 1295 449 256 75 66 chr1 93085694 93085907 -104109525 - L1MB3 LINE L1 -474 5697 5483 1 1295 631 240 96 72 chr1 93086094 93086226 -104109206 - Lx9 LINE L1 -9 7635 7515 1 1295 342 0 0 0 chr1 93086226 93086264 -104109168 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1295 631 240 96 72 chr1 93086264 93086423 -104109009 - Lx9 LINE L1 -130 7514 7337 1 1295 1067 113 0 0 chr1 93086672 93086813 -104108619 + B1_Mur3 SINE Alu 1 141 -8 1 1295 219 69 0 0 chr1 93086813 93086842 -104108590 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1295 198 91 0 0 chr1 93086963 93086996 -104108436 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1295 462 272 64 38 chr1 93087024 93087288 -104108144 - L1MB3 LINE L1 -1771 4372 4099 1 1295 248 231 25 85 chr1 93087382 93087500 -104107932 + Charlie25 DNA MER1_type 484 594 -1930 1 1295 366 289 163 0 chr1 93087507 93087697 -104107735 - L1_Mur3 LINE L1 -1827 4053 3833 1 1295 894 118 22 7 chr1 93087701 93087837 -104107595 - B2_Mm2 SINE B2 0 195 58 1 1295 319 286 77 27 chr1 93087865 93088048 -104107384 - L1_Mur3 LINE L1 -2039 3841 3650 1 1295 484 165 20 30 chr1 93088048 93088148 -104107284 - PB1D9 SINE Alu 0 120 22 1 1295 354 257 30 96 chr1 93088178 93088397 -104107035 - L1MC LINE L1 -3262 2884 2674 1 1295 193 261 153 61 chr1 93091814 93091912 -104103520 + MIR SINE MIR 34 140 -68 1 1295 782 215 105 144 chr1 93092872 93093149 -104102283 + MTE2a LTR MaLR 2 267 -112 1 1295 207 88 0 0 chr1 93093309 93093343 -104102089 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1295 627 191 0 0 chr1 93094222 93094369 -104101063 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 1295 293 0 27 0 chr1 93095748 93095785 -104099647 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1295 1180 259 39 64 chr1 93095785 93096189 -104099243 - MTD LTR MaLR -18 401 7 1 1295 1079 103 112 22 chr1 93096191 93096369 -104099063 + B2_Mm2 SINE B2 1 194 -1 1 1295 321 319 20 82 chr1 93096979 93097126 -104098306 + MLT1E2 LTR MaLR 36 173 -454 1 1295 303 262 206 35 chr1 93097148 93097318 -104098114 - L1MC4a LINE L1 -934 6948 6750 1 1295 525 302 90 24 chr1 93097483 93097566 -104097866 + B4A SINE B4 1 82 -210 1 1295 453 36 0 0 chr1 93097566 93097621 -104097811 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1295 297 0 0 0 chr1 93097621 93097653 -104097779 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1295 525 302 90 24 chr1 93097653 93097734 -104097698 + B4A SINE B4 83 176 -116 1 1295 547 236 135 29 chr1 93097760 93097930 -104097502 + B3A SINE B2 2 189 -9 1 1295 279 113 0 0 chr1 93098284 93098337 -104097095 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1295 377 245 47 102 chr1 93098624 93098768 -104096664 - B1F2 SINE Alu 0 149 4 1 1295 798 247 6 0 chr1 93099287 93099445 -104095987 - RSINE1 SINE B4 -4 161 3 1 1295 235 91 36 18 chr1 93099633 93099689 -104095743 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 1 1295 387 317 73 59 chr1 93099733 93100137 -104095295 - L1MA6 LINE L1 -275 6025 5587 1 1295 1755 206 65 18 chr1 93100175 93100575 -104094857 - MTD LTR MaLR 0 419 1 1 1295 201 146 0 0 chr1 93102079 93102127 -104093305 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1295 234 239 0 0 chr1 93103511 93103557 -104091875 + CT-rich Low_complexity Low_complexity 1 46 0 1 1295 384 209 0 0 chr1 93109026 93109093 -104086339 + PB1D10 SINE Alu 49 115 -2 1 1295 952 119 0 12 chr1 93109282 93109443 -104085989 + (TTTC)n Simple_repeat Simple_repeat 3 161 0 1 1295 256 290 64 0 chr1 93109443 93109534 -104085898 - B1_Mur3 SINE Alu -13 107 3 1 1295 423 56 0 0 chr1 93109611 93109665 -104085767 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1295 249 102 80 20 chr1 93109711 93109761 -104085671 - B1_Mm SINE Alu -24 123 71 1 1295 354 286 43 43 chr1 93110090 93110229 -104085203 - RSINE1 SINE B4 -24 141 3 1 1295 253 286 66 0 chr1 93110266 93110357 -104085075 - B1F1 SINE Alu -5 144 48 1 1295 220 264 32 204 chr1 93110298 93110455 -104084977 - ID_B1 SINE B4 -15 209 80 1 1295 23 0 0 0 chr1 93110462 93110485 -104084947 + AT_rich Low_complexity Low_complexity 1 23 0 1 1295 637 131 8 32 chr1 93110652 93110691 -104084741 + polypyrimidine Low_complexity Low_complexity 88 126 0 1 1295 1190 68 0 0 chr1 93110691 93110838 -104084594 - B1_Mus1 SINE Alu 0 148 2 1 1295 637 131 8 32 chr1 93110838 93110924 -104084508 + polypyrimidine Low_complexity Low_complexity 4 87 0 1 1295 1100 54 15 33 chr1 93111173 93111449 -104083983 + (CA)n Simple_repeat Simple_repeat 1 270 0 1 1295 879 199 23 6 chr1 93112241 93112413 -104083019 - ID_B1 SINE B4 0 224 50 1 1295 456 261 17 9 chr1 93112426 93112542 -104082890 - PB1D10 SINE Alu 0 117 1 1 1295 225 0 0 0 chr1 93114326 93114351 -104081081 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1295 345 279 93 75 chr1 93114421 93115123 -104080309 - L1MCc LINE L1 -4554 2483 1738 2 1295 281 268 134 28 chr1 93115145 93115192 -104080240 - B2_Mm2 SINE B2 -10 185 133 2 1295 204 40 0 0 chr1 93115192 93115217 -104080215 + (CATG)n Simple_repeat Simple_repeat 2 26 0 2 1295 343 232 47 10 chr1 93115217 93115311 -104080121 - B3 SINE B2 -63 132 29 2 1295 318 296 0 20 chr1 93115412 93115512 -104079920 - PB1D10 SINE Alu -8 109 12 2 1295 247 244 100 44 chr1 93115439 93115529 -104079903 - B4A SINE B4 -118 174 80 2 1295 442 264 79 0 chr1 93115999 93116139 -104079293 - L1MCc LINE L1 -5149 1274 1124 2 1295 1010 242 264 29 chr1 93116214 93116596 -104078836 - RMER15 LTR ERVL -16 559 88 2 1295 745 82 27 27 chr1 93116625 93116775 -104078657 + (TCTA)n Simple_repeat Simple_repeat 3 152 0 2 1295 573 137 0 50 chr1 93116775 93116875 -104078557 - B1_Mur1 SINE Alu -6 143 49 2 1295 242 282 36 60 chr1 93116813 93116896 -104078536 - RLTR25B LTR ERVK -521 507 427 2 1295 1099 209 19 5 chr1 93116907 93117119 -104078313 - B3 SINE B2 0 216 2 2 1295 4630 27 36 11 chr1 93117467 93118026 -104077406 + L1Md_F3 LINE L1 5998 6570 -14 2 1295 432 0 0 0 chr1 93118397 93118445 -104076987 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1295 189 0 0 0 chr1 93118445 93118465 -104076967 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1295 267 318 0 0 chr1 93118509 93118572 -104076860 - B4A SINE B4 -6 286 224 2 1295 2043 161 55 42 chr1 93118574 93118977 -104076455 - MTD LTR MaLR -9 410 3 2 1295 372 43 0 0 chr1 93119232 93119278 -104076154 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 1295 726 167 119 0 chr1 93120462 93120588 -104074844 - B1_Mus1 SINE Alu -6 142 2 2 1295 349 287 8 22 chr1 93120870 93120987 -104074445 + B1F SINE Alu 2 120 0 2 1295 230 270 40 0 chr1 93121052 93121126 -104074306 + MT2B LTR ERVL 65 141 -460 2 1295 289 139 0 0 chr1 93122170 93122213 -104073219 - B1_Mus2 SINE Alu -10 137 95 2 1295 387 0 0 0 chr1 93122215 93122258 -104073174 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1295 616 167 45 18 chr1 93122258 93122368 -104073064 - B1_Mur3 SINE Alu -2 147 35 2 1295 703 206 166 0 chr1 93122403 93122578 -104072854 - B3 SINE B2 -11 205 2 2 1295 536 283 20 82 chr1 93123048 93123244 -104072188 + B4 SINE B4 9 192 -100 2 1295 510 46 0 0 chr1 93123608 93123673 -104071759 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1295 520 221 402 56 chr1 93123843 93124089 -104071343 - MLT1B LTR MaLR -59 331 1 2 1295 503 214 133 128 chr1 93125018 93125355 -104070077 - RMER17C LTR ERVK -71 339 1 2 1295 429 20 0 0 chr1 93125364 93125414 -104070018 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2 1295 808 167 72 0 chr1 93125430 93125568 -104069864 - B1_Mus1 SINE Alu 0 148 1 2 1295 429 242 132 94 chr1 93125870 93125893 -104069539 - RMER10A LTR ERVL -13 429 410 2 1295 1648 166 78 40 chr1 93125893 93126088 -104069344 - RMER17C LTR ERVK 0 410 214 2 1295 252 0 0 0 chr1 93126088 93126116 -104069316 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1295 1648 166 78 40 chr1 93126116 93126315 -104069117 - RMER17C LTR ERVK -197 213 1 2 1295 429 242 132 94 chr1 93126315 93126578 -104068854 - RMER10A LTR ERVL -33 409 132 2 1295 330 300 150 20 chr1 93127392 93127447 -104067985 + B4A SINE B4 2 57 -235 2 1295 2690 109 18 5 chr1 93127447 93127835 -104067597 + ORR1B1 LTR MaLR 2 394 0 2 1295 330 300 150 20 chr1 93127835 93127862 -104067570 + B4A SINE B4 58 103 -189 2 1295 234 320 118 20 chr1 93127862 93127964 -104067468 + PB1D10 SINE Alu 1 112 -5 2 1295 294 95 0 0 chr1 93128006 93128048 -104067384 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1295 1009 127 0 0 chr1 93128187 93128329 -104067103 + B1_Mus1 SINE Alu 5 146 -2 2 1295 207 0 0 0 chr1 93128936 93128959 -104066473 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1295 1178 89 65 0 chr1 93128965 93129133 -104066299 - B2_Mm2 SINE B2 -14 181 3 2 1295 2598 79 3 0 chr1 93129199 93129539 -104065893 - MTB LTR MaLR -59 341 1 2 1295 6651 98 24 111 chr1 93129539 93130741 -104064691 - MTB-int LTR MaLR 0 1098 1 2 1295 3152 61 2 5 chr1 93130745 93131142 -104064290 - MTB LTR MaLR -4 396 1 2 1295 5598 101 52 4 chr1 93131142 93131938 -104063494 + MERVL-int LTR ERVL 1270 2103 -3382 2 1295 2574 137 17 55 chr1 93131978 93132450 -104062982 - RMER6B LTR ERVK 0 461 8 2 1295 10252 128 97 70 chr1 93132454 93133798 -104061634 - MYSERV6-int LTR ERVK -1188 7771 6380 2 1295 237 33 0 0 chr1 93133798 93133828 -104061604 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1295 10252 128 97 70 chr1 93133828 93133844 -104061588 - MYSERV6-int LTR ERVK -2580 6379 6363 2 1295 282 230 14 32 chr1 93133844 93133918 -104061514 - B1_Mus1 SINE Alu -49 71 4 2 1295 10252 128 97 70 chr1 93133918 93134526 -104060906 - MYSERV6-int LTR ERVK -2580 6362 5676 2 1295 1145 98 0 0 chr1 93134526 93134679 -104060753 - RMER6B LTR ERVK -308 153 1 2 1295 763 108 8 8 chr1 93134728 93134858 -104060574 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 2 1295 264 277 58 96 chr1 93134864 93134909 -104060523 - PB1D10 SINE Alu 0 117 76 2 1295 2933 118 81 22 chr1 93134909 93135404 -104060028 + RLTR28 LTR ERVL 1 524 0 2 1295 264 277 58 96 chr1 93135404 93135462 -104059970 - PB1D10 SINE Alu -42 75 18 2 1295 499 246 149 0 chr1 93135411 93135545 -104059887 - ID_B1 SINE B4 -69 155 2 2 1295 375 23 0 0 chr1 93135584 93135628 -104059804 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1295 388 155 0 78 chr1 93136139 93136216 -104059216 - URR1B DNA MER1_type -1 224 154 2 1295 578 186 0 15 chr1 93136216 93136347 -104059085 + (TATG)n Simple_repeat Simple_repeat 1 129 0 2 1295 1786 152 133 0 chr1 93136355 93136677 -104058755 - RMER1B Other Other -5 1061 697 2 1295 473 174 11 65 chr1 93136662 93136683 -104058749 - RMER1B Other Other -505 561 546 2 1295 3067 61 45 3 chr1 93136683 93137063 -104058369 + MTA_Mm LTR MaLR 1 396 0 2 1295 473 196 18 66 chr1 93137063 93137184 -104058248 - RMER1B Other Other -521 545 475 2 1295 969 136 12 43 chr1 93137184 93137346 -104058086 - URR1B DNA MER1_type -69 156 1 2 1295 2648 77 34 3 chr1 93137879 93138233 -104057199 + RLTR8 LTR ERVK 1 365 0 2 1295 603 316 58 51 chr1 93138468 93138781 -104056651 + Lx6 LINE L1 7142 7456 -4 2 1295 227 284 24 12 chr1 93138871 93138953 -104056479 - L1_Mm LINE L1 -2024 3859 3777 2 1295 31 44 0 0 chr1 93139826 93139871 -104055561 + AT_rich Low_complexity Low_complexity 1 45 0 2 1295 231 316 25 38 chr1 93140276 93140355 -104055077 - B4 SINE B4 0 292 215 2 1295 270 183 0 0 chr1 93140427 93140498 -104054934 + CT-rich Low_complexity Low_complexity 2 72 0 2 1295 795 161 0 0 chr1 93140509 93140689 -104054743 + CT-rich Low_complexity Low_complexity 1 180 0 2 1295 279 220 0 0 chr1 93140707 93140757 -104054675 - B4 SINE B4 -240 52 3 2 1295 332 289 17 26 chr1 93140771 93140861 -104054571 - PB1D7 SINE Alu -12 108 12 2 1295 337 179 0 18 chr1 93141029 93141086 -104054346 - B1_Mur4 SINE Alu -52 98 43 2 1295 555 202 90 30 chr1 93141231 93141364 -104054068 + B1_Mus2 SINE Alu 1 141 -6 2 1295 627 215 0 17 chr1 93141364 93141544 -104053888 + GA-rich Low_complexity Low_complexity 2 178 0 2 1295 724 222 52 70 chr1 93141544 93141757 -104053675 + B3 SINE B2 7 215 -1 2 1295 584 282 6 30 chr1 93142034 93142078 -104053354 - RSINE1 SINE B4 0 165 126 2 1295 438 20 0 0 chr1 93142078 93142129 -104053303 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1295 584 282 6 30 chr1 93142129 93142252 -104053180 - RSINE1 SINE B4 -40 125 2 2 1295 921 140 0 14 chr1 93142289 93142434 -104052998 - B1_Mur3 SINE Alu -6 143 1 2 1295 431 268 0 20 chr1 93142446 93142545 -104052887 - RSINE1 SINE B4 0 165 69 2 1295 3086 8 3 6 chr1 93143031 93143388 -104052044 + MTA_Mm LTR MaLR 41 396 0 2 1295 30 27 0 0 chr1 93143425 93143462 -104051970 + AT_rich Low_complexity Low_complexity 1 37 0 2 1295 815 32 0 0 chr1 93143462 93143557 -104051875 - L1Md_F2 LINE L1 -837 5745 5651 2 1295 565 334 36 258 chr1 93143557 93143591 -104051841 - MLT1D LTR MaLR -370 257 231 2 1295 2607 110 55 0 chr1 93143591 93143990 -104051442 + BGLII LTR ERVK 1 421 0 2 1295 565 318 28 5 chr1 93143990 93144195 -104051237 - MLT1D LTR MaLR -268 237 28 2 1295 216 0 0 0 chr1 93144195 93144219 -104051213 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1295 1156 54 0 75 chr1 93144219 93144378 -104051054 - B1_Mm SINE Alu 0 147 1 2 1295 224 158 0 17 chr1 93144536 93144594 -104050838 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 2 1295 616 99 0 82 chr1 93144595 93144705 -104050727 - B1_Mur4 SINE Alu -2 148 48 2 1295 188 333 267 0 chr1 93144758 93144893 -104050539 + MIR SINE MIR 28 198 -64 2 1295 917 107 17 7 chr1 93145261 93145451 -104049981 + MT2B2 LTR ERVL 1 165 -310 2 1295 646 169 137 8 chr1 93145504 93145635 -104049797 - B1_Mur2 SINE Alu -1 148 1 2 1295 375 199 23 39 chr1 93145740 93145837 -104049595 - B1F1 SINE Alu 0 149 57 2 1295 180 152 0 0 chr1 93146010 93146043 -104049389 + G-rich Low_complexity Low_complexity 1 33 0 2 1295 211 260 76 25 chr1 93146046 93146125 -104049307 + ID4_ SINE ID 1 83 0 2 1295 396 200 218 0 chr1 93146310 93146420 -104049012 - B1_Mm SINE Alu -12 135 2 2 1295 342 239 16 110 chr1 93149506 93149633 -104045799 - PB1D10 SINE Alu 0 117 3 2 1295 354 271 165 3 chr1 93150071 93150244 -104045188 + L1MC1 LINE L1 6124 6324 -20 2 1295 767 191 13 20 chr1 93151101 93151251 -104044181 + B1_Mur2 SINE Alu 1 149 0 2 1295 382 248 178 34 chr1 93152354 93152540 -104042892 + B3A SINE B2 23 216 0 2 1295 745 137 8 8 chr1 93152553 93152671 -104042761 + B1_Mus2 SINE Alu 30 147 0 2 1295 315 177 0 0 chr1 93152671 93152733 -104042699 + A-rich Low_complexity Low_complexity 1 62 0 2 1295 229 237 51 38 chr1 93152775 93152854 -104042578 - MLT1A0 LTR MaLR -145 263 184 2 1295 543 158 99 0 chr1 93152870 93152971 -104042461 - MLT1A0 LTR MaLR -254 111 1 2 1295 989 288 86 26 chr1 93155311 93155650 -104039782 + MLT1A0 LTR MaLR 5 363 -2 2 1295 180 0 0 0 chr1 93155675 93155695 -104039737 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1295 967 249 131 61 chr1 93156252 93156468 -104038964 - L1MA9 LINE L1 -408 5904 5672 2 1295 829 169 229 0 chr1 93156468 93156651 -104038781 - URR1A DNA MER1_type 0 226 2 2 1295 967 249 131 61 chr1 93156651 93156749 -104038683 - L1MA9 LINE L1 -641 5671 5587 2 1295 243 0 0 0 chr1 93156749 93156776 -104038656 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1295 967 249 131 61 chr1 93156776 93157002 -104038430 - L1MA9 LINE L1 -726 5586 5327 2 1295 180 0 0 0 chr1 93157002 93157022 -104038410 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 2 1295 455 238 139 64 chr1 93157022 93157207 -104038225 - L1MA9 LINE L1 -821 5319 5117 2 1295 390 184 0 0 chr1 93157210 93157286 -104038146 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1295 655 265 29 46 chr1 93157288 93157462 -104037970 + B3A SINE B2 1 171 -27 3 1295 479 220 206 44 chr1 93157633 93158054 -104037378 - L1MA9 LINE L1 -1241 4902 4355 2 1295 21 36 0 0 chr1 93158190 93158218 -104037214 + AT_rich Low_complexity Low_complexity 1 28 0 3 1295 234 213 0 0 chr1 93158449 93158496 -104036936 - L1MA9 LINE L1 -2011 4129 4083 2 1295 387 0 0 0 chr1 93158655 93158698 -104036734 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1295 718 191 35 0 chr1 93159083 93159224 -104036208 + B1_Mus1 SINE Alu 1 146 -2 3 1295 604 206 62 0 chr1 93159734 93159854 -104035578 - B1_Mur1 SINE Alu -23 126 1 3 1295 314 250 0 0 chr1 93160031 93160095 -104035337 + ID4_ SINE ID 4 67 -16 3 1295 458 125 12 0 chr1 93160814 93160894 -104034538 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1295 226 281 71 102 chr1 93161189 93161215 -104034217 - MT2B2 LTR ERVL -291 293 171 3 1295 384 230 69 10 chr1 93161215 93161316 -104034116 - PB1D9 SINE Alu -7 113 7 3 1295 256 112 0 0 chr1 93161310 93161353 -104034079 + B1_Mus2 SINE Alu 30 72 -48 3 1295 282 315 52 161 chr1 93163132 93163146 -104032286 + MT2B2 LTR ERVL 159 182 -402 3 1295 548 260 0 0 chr1 93163146 93163246 -104032186 + PB1D10 SINE Alu 9 108 -9 3 1295 282 315 52 161 chr1 93163246 93163325 -104032107 + MT2B2 LTR ERVL 183 330 -254 3 1295 683 240 151 0 chr1 93163907 93164086 -104031346 + B3 SINE B2 5 210 -6 3 1295 324 314 47 9 chr1 93164202 93164308 -104031124 - L1MC LINE L1 -2387 3759 3650 3 1295 447 331 128 27 chr1 93164333 93164662 -104030770 - L1MC LINE L1 -2566 3580 3219 3 1295 520 260 78 26 chr1 93165122 93165276 -104030156 + RSINE1 SINE B4 3 164 -1 3 1295 474 340 35 57 chr1 93165443 93165671 -104029761 - RMER12 LTR ERVK 0 1322 1100 3 1295 4219 142 55 27 chr1 93165790 93166573 -104028859 - RLTR22_Mur LTR ERVK -1043 805 1 3 1295 923 163 73 6 chr1 93166581 93166784 -104028648 + ORR1D1-int LTR MaLR 1154 1541 -39 3 1295 1926 76 0 4 chr1 93166827 93167077 -104028355 - L1_Mus1 LINE L1 -1 6566 6318 3 1295 598 184 208 18 chr1 93167140 93167385 -104028047 + ORR1D1 LTR MaLR 30 366 -8 3 1295 1007 57 0 0 chr1 93167781 93167905 -104027527 + B1_Mus1 SINE Alu 14 137 -11 3 1295 229 306 115 36 chr1 93168079 93168094 -104027338 + YREP_Mm Unknown Unknown 151 295 -1512 3 1295 589 212 34 8 chr1 93168094 93168213 -104027219 - ID_B1 SINE B4 0 224 103 3 1295 378 0 0 0 chr1 93168420 93168462 -104026970 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1295 423 0 0 0 chr1 93168643 93168690 -104026742 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1295 336 24 0 0 chr1 93168690 93168730 -104026702 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1295 257 283 42 32 chr1 93169664 93169759 -104025673 - MTEa LTR MaLR -28 351 256 3 1295 259 259 57 34 chr1 93170179 93170192 -104025240 + ID_B1 SINE B4 126 215 -9 3 1295 369 240 0 0 chr1 93170192 93170267 -104025165 + B1_Mus2 SINE Alu 64 138 -9 3 1295 372 218 168 0 chr1 93170319 93170420 -104025012 + B3A SINE B2 5 122 -76 3 1295 764 37 103 0 chr1 93170487 93170594 -104024838 + B1_Mus2 SINE Alu 30 147 0 3 1295 628 292 34 0 chr1 93170838 93170985 -104024447 - RSINE1 SINE B4 -10 155 4 3 1295 249 152 0 78 chr1 93171757 93171821 -104023611 + T-rich Low_complexity Low_complexity 1 59 0 3 1295 207 0 0 0 chr1 93171924 93171947 -104023485 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1295 231 103 0 0 chr1 93172746 93172785 -104022647 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1295 234 0 0 0 chr1 93172931 93172957 -104022475 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1295 632 178 8 25 chr1 93173875 93173996 -104021436 + PB1D9 SINE Alu 2 120 0 3 1295 570 243 36 0 chr1 93174450 93174590 -104020842 + B1F2 SINE Alu 5 149 0 3 1295 712 219 68 7 chr1 93176589 93176736 -104018696 - B3 SINE B2 -11 205 50 3 1295 375 262 107 0 chr1 93176721 93176824 -104018608 - B1F1 SINE Alu -10 139 26 3 1295 251 351 0 0 chr1 93177766 93177880 -104017552 - RMER16-int LTR ERVK -279 5888 5775 3 1295 8281 85 11 7 chr1 93177965 93179151 -104016281 - RMER16-int LTR ERVK -856 4550 3360 3 1295 590 181 93 16 chr1 93179339 93179468 -104015964 + B1_Mus2 SINE Alu 2 140 -7 3 1295 803 273 56 19 chr1 93179641 93179854 -104015578 + B4 SINE B4 2 222 -70 3 1295 822 165 15 0 chr1 93179878 93180011 -104015421 + B1_Mur4 SINE Alu 6 140 -10 3 1295 1024 159 132 0 chr1 93180042 93180231 -104015201 + B3 SINE B2 3 216 0 3 1295 222 105 0 0 chr1 93181276 93181314 -104014118 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1295 222 37 0 0 chr1 93181592 93181619 -104013813 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 3 1295 186 43 0 0 chr1 93184674 93184697 -104010735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1295 684 209 93 20 chr1 93184697 93184848 -104010584 - B2_Mm2 SINE B2 -33 162 1 3 1295 361 269 98 63 chr1 93184915 93185058 -104010374 + RSINE1 SINE B4 8 155 -10 3 1295 498 195 199 14 chr1 93186750 93186913 -104008519 + B3 SINE B2 9 195 0 3 1295 1734 161 146 25 chr1 93186920 93187283 -104008149 - MTB_Mm LTR MaLR 0 407 1 3 1295 331 338 110 27 chr1 93187809 93187955 -104007477 + RSINE1 SINE B4 8 165 0 3 1295 3013 174 92 39 chr1 93188221 93189184 -104006248 - RLTR13D1 LTR ERVK 0 1023 1 3 1295 23 0 0 0 chr1 93189455 93189478 -104005954 + AT_rich Low_complexity Low_complexity 1 23 0 3 1295 519 178 56 0 chr1 93189842 93189932 -104005500 + B1_Mur1 SINE Alu 47 141 -8 3 1295 26 30 0 0 chr1 93189932 93189965 -104005467 + AT_rich Low_complexity Low_complexity 1 33 0 3 1295 226 151 56 19 chr1 93190007 93190061 -104005371 + L1MDa LINE L1 1818 1873 -4760 3 1295 518 138 50 0 chr1 93190206 93190286 -104005146 + PB1D9 SINE Alu 30 113 -7 3 1295 730 274 0 7 chr1 93190671 93190825 -104004607 + B3A SINE B2 9 161 -37 3 1295 239 301 113 17 chr1 93191259 93191374 -104004058 + L1M4 LINE L1 282 407 -6135 3 1296 252 226 0 0 chr1 93193366 93193419 -104002013 + GA-rich Low_complexity Low_complexity 2 54 0 3 1296 602 186 0 0 chr1 93194166 93194268 -104001164 - B1_Mur4 SINE Alu -48 102 1 3 1296 319 265 0 105 chr1 93194268 93194280 -104001152 - MT2B LTR ERVL -347 254 153 3 1296 265 183 0 130 chr1 93194297 93194366 -104001066 - B3 SINE B2 -10 206 147 3 1296 445 247 82 0 chr1 93195687 93195784 -103999648 + PB1D10 SINE Alu 6 110 -7 3 1296 240 305 17 103 chr1 93195784 93195800 -103999632 + MT2B2 LTR ERVL 170 272 -312 3 1296 763 151 48 48 chr1 93197279 93197425 -103998007 + B1_Mus2 SINE Alu 1 146 -1 3 1296 287 136 0 0 chr1 93197741 93197785 -103997647 - B1_Mus1 SINE Alu -104 44 1 3 1296 799 179 22 0 chr1 93198465 93198599 -103996833 - B1_Mur4 SINE Alu -13 137 1 3 1296 305 77 39 0 chr1 93199583 93199635 -103995797 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 3 1296 1290 98 66 0 chr1 93200259 93200442 -103994990 + B2_Mm2 SINE B2 1 195 0 3 1296 3581 74 4 17 chr1 93200790 93201271 -103994161 - MT2C_Mm LTR ERVL 0 475 1 3 1296 23 78 0 0 chr1 93201502 93201553 -103993879 + AT_rich Low_complexity Low_complexity 1 51 0 3 1296 773 161 0 49 chr1 93202290 93202434 -103992998 + B1_Mur4 SINE Alu 6 142 -8 3 1296 305 279 0 37 chr1 93202700 93202765 -103992667 - ID4_ SINE ID -3 80 18 3 1296 1019 180 28 138 chr1 93202765 93203126 -103992306 - RLTRETN_Mm LTR ERVK -1 321 1 3 1296 305 279 0 37 chr1 93203126 93203142 -103992290 - ID4_ SINE ID -66 17 2 3 1296 356 341 50 55 chr1 93203211 93203359 -103992073 - L1M4b LINE L1 -991 6015 5861 3 1296 1260 48 0 0 chr1 93203359 93203506 -103991926 - B1_Mus2 SINE Alu 0 147 1 3 1296 356 341 50 55 chr1 93203506 93203577 -103991855 - L1M4b LINE L1 -1146 5860 5798 3 1296 370 309 76 57 chr1 93203746 93203904 -103991528 + LTR69 LTR ERVL 37 197 -391 3 1296 353 301 55 49 chr1 93203925 93204089 -103991343 + LTR69 LTR ERVL 322 486 -102 3 1296 1280 108 27 0 chr1 93204131 93204317 -103991115 + B2_Mm1t SINE B2 1 191 -2 3 1296 293 308 26 33 chr1 93204437 93204588 -103990844 - L1M4b LINE L1 -6133 1201 1052 3 1296 228 317 211 0 chr1 93207254 93207415 -103988017 + L1MDa LINE L1 969 1163 -5470 3 1296 250 302 25 25 chr1 93207651 93207770 -103987662 + L1MDa LINE L1 1470 1588 -5045 3 1296 783 178 20 7 chr1 93207771 93207918 -103987514 + B1_Mur2 SINE Alu 1 149 0 3 1296 421 285 99 99 chr1 93207958 93208180 -103987252 + L1MDa LINE L1 1588 1809 -4824 3 1296 260 319 11 0 chr1 93208204 93208298 -103987134 + L1MDa LINE L1 1876 1970 -4663 3 1296 216 0 0 0 chr1 93208355 93208379 -103987053 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1296 247 242 0 0 chr1 93208395 93208461 -103986971 + L1MDa LINE L1 2159 2224 -4409 3 1296 324 258 53 21 chr1 93208507 93208602 -103986830 - PB1D10 SINE Alu -9 108 11 3 1296 21 0 0 0 chr1 93208675 93208696 -103986736 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 228 315 55 0 chr1 93208815 93208888 -103986544 + ID4 SINE ID 5 81 -2 3 1296 1738 178 70 14 chr1 93208917 93209276 -103986156 - MTE2b LTR MaLR 0 379 1 3 1296 810 257 9 24 chr1 93209341 93209560 -103985872 + B3A SINE B2 2 215 -1 3 1296 351 235 154 0 chr1 93210365 93210514 -103984918 + L1MDa LINE L1 4209 4380 -2157 3 1296 337 244 158 0 chr1 93211056 93211183 -103984249 + L1MD LINE L1 3621 3767 -2379 3 1296 370 284 99 47 chr1 93211193 93211426 -103984006 + L1MD LINE L1 4928 5172 -974 3 1296 553 323 124 23 chr1 93211426 93211683 -103983749 + B4A SINE B4 8 290 -2 3 1296 468 0 0 0 chr1 93211821 93211873 -103983559 + (CATA)n Simple_repeat Simple_repeat 2 53 0 3 1296 702 234 6 55 chr1 93211873 93212036 -103983396 - MTE2a LTR MaLR -51 328 174 3 1296 287 264 42 0 chr1 93212172 93212244 -103983188 + ID_B1 SINE B4 79 153 -71 3 1296 456 241 104 15 chr1 93212305 93212440 -103982992 + RSINE1 SINE B4 4 150 -15 3 1296 1025 233 35 13 chr1 93212643 93212873 -103982559 - MTEb LTR MaLR -141 238 4 3 1296 378 0 0 0 chr1 93214113 93214155 -103981277 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1296 243 136 16 33 chr1 93214587 93214648 -103980784 + CT-rich Low_complexity Low_complexity 5 64 0 3 1296 863 149 64 0 chr1 93214657 93214798 -103980634 - B1_Mur4 SINE Alu 0 150 1 3 1296 573 15 0 0 chr1 93214801 93214867 -103980565 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 3 1296 800 164 72 0 chr1 93214868 93215020 -103980412 - B2_Mm2 SINE B2 -31 164 2 4 1296 818 111 17 0 chr1 93216160 93216277 -103979155 + PB1D9 SINE Alu 2 120 0 4 1296 483 204 64 64 chr1 93218051 93218161 -103977271 + PB1D9 SINE Alu 1 110 -10 4 1296 225 0 0 0 chr1 93218165 93218190 -103977242 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1296 231 61 0 0 chr1 93218342 93218375 -103977057 + (GCTG)n Simple_repeat Simple_repeat 4 36 0 4 1296 187 333 51 0 chr1 93220758 93220836 -103974596 + MIRm SINE MIR 96 177 -99 4 1296 671 166 13 13 chr1 93222273 93222432 -103973000 + GA-rich Low_complexity Low_complexity 2 160 0 4 1296 192 338 54 0 chr1 93224290 93224364 -103971068 - MIR SINE MIR -72 190 113 4 1296 202 333 132 23 chr1 93225758 93225887 -103969545 - MER5B DNA MER1_type -2 176 34 4 1296 3461 13 10 13 chr1 93226289 93226686 -103968746 - MTA_Mm LTR MaLR 0 396 1 4 1296 229 200 0 0 chr1 93227310 93227350 -103968082 - U2 snRNA snRNA -148 40 1 4 1296 793 254 129 0 chr1 93227356 93227549 -103967883 - ID_B1 SINE B4 -3 221 4 4 1296 403 269 83 0 chr1 93227624 93227732 -103967700 + PB1D7 SINE Alu 3 119 -1 4 1296 270 278 0 14 chr1 93227772 93227845 -103967587 - LTR37A LTR ERV1 -34 392 321 4 1296 645 80 0 0 chr1 93228508 93228596 -103966836 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 1296 300 320 68 72 chr1 93228679 93228928 -103966504 - L1MEe LINE L1 -4398 1610 1363 4 1296 436 203 154 41 chr1 93228933 93229056 -103966376 + ID_B1 SINE B4 87 223 -1 4 1296 248 296 139 0 chr1 93229282 93229397 -103966035 - L1MEe LINE L1 -4959 1125 995 4 1296 1165 95 6 0 chr1 93229928 93230097 -103965335 - B2_Mm1t SINE B2 -22 171 2 4 1296 283 325 31 23 chr1 93234744 93234873 -103960559 - LTR40c LTR ERVL -176 289 160 4 1296 231 258 0 0 chr1 93236014 93236076 -103959356 + GA-rich Low_complexity Low_complexity 1 62 0 4 1296 313 320 3 3 chr1 93237598 93237989 -103957443 + (TG)n Simple_repeat Simple_repeat 1 391 0 4 1296 350 286 14 50 chr1 93239885 93240025 -103955407 - L2a LINE L2 -260 3166 3032 4 1296 423 0 0 0 chr1 93240349 93240396 -103955036 + (CACAG)n Simple_repeat Simple_repeat 1 47 0 4 1296 198 0 0 0 chr1 93242882 93242904 -103952528 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1296 430 200 31 21 chr1 93244832 93244929 -103950503 + RLTR23 LTR ERV1 333 430 0 4 1296 3004 68 39 3 chr1 93245651 93246037 -103949395 + MTB LTR MaLR 1 400 0 4 1296 3983 82 7 7 chr1 93246039 93246637 -103948795 + MTB-int LTR MaLR 3 600 -498 4 1296 453 16 78 0 chr1 93246639 93246703 -103948729 + MTB_Mm LTR MaLR 337 405 -2 4 1296 222 37 0 0 chr1 93247597 93247624 -103947808 + (CAGCC)n Simple_repeat Simple_repeat 3 29 0 4 1296 314 286 0 67 chr1 93248488 93248623 -103946809 + C-rich Low_complexity Low_complexity 5 130 0 4 1296 715 98 0 0 chr1 93248646 93248748 -103946684 - B2_Mm2 SINE B2 -88 107 6 4 1296 451 226 112 9 chr1 93248767 93248874 -103946558 - PB1D7 SINE Alu 0 120 3 4 1296 227 339 138 0 chr1 93249069 93249199 -103946233 + MIR SINE MIR 70 217 -45 4 1296 2736 121 8 31 chr1 93249386 93249873 -103945559 - RLTR31B_Mm LTR ERVK -81 476 1 4 1296 765 157 96 7 chr1 93251252 93251387 -103944045 + B1_Mus1 SINE Alu 2 148 0 4 1296 217 215 63 0 chr1 93251763 93251842 -103943590 + G-rich Low_complexity Low_complexity 3 86 0 4 1296 221 274 32 0 chr1 93251862 93251924 -103943508 + (CATG)n Simple_repeat Simple_repeat 4 67 0 4 1296 231 277 65 52 chr1 93252514 93252668 -103942764 + MIRb SINE MIR 18 185 -83 4 1296 278 347 94 30 chr1 93253232 93253290 -103942142 - MIRc SINE MIR -53 215 156 4 1296 400 316 82 8 chr1 93253290 93253424 -103942008 - RSINE1 SINE B4 -19 146 3 4 1296 278 347 94 30 chr1 93253424 93253567 -103941865 - MIRc SINE MIR -113 155 2 4 1296 340 243 0 26 chr1 93254138 93254214 -103941218 + ID_B1 SINE B4 118 191 -33 4 1296 1225 189 149 38 chr1 93257174 93257543 -103937889 - RMER17C LTR ERVK 0 410 1 4 1296 624 197 134 0 chr1 93258542 93258684 -103936748 - URR1A DNA MER1_type -4 222 62 4 1296 1128 134 58 15 chr1 93259352 93259557 -103935875 + ORR1C2 LTR MaLR 3 216 -168 4 1296 1181 88 0 0 chr1 93259690 93259837 -103935595 + B1_Mus1 SINE Alu 2 148 0 4 1296 237 314 66 66 chr1 93260030 93260197 -103935235 - LTR33 LTR ERVL -58 457 291 4 1296 1268 144 303 52 chr1 93260733 93260781 -103934651 - ORR1C2 LTR MaLR 0 384 345 4 1296 1307 90 39 6 chr1 93260781 93260960 -103934472 - B2_Mm2 SINE B2 -8 187 3 4 1296 1268 144 303 52 chr1 93260960 93261218 -103934214 - ORR1C2 LTR MaLR -40 344 1 4 1296 263 85 21 0 chr1 93262239 93262286 -103933146 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 1296 449 315 46 0 chr1 93270934 93271064 -103924368 - RSINE1 SINE B4 -28 137 2 4 1296 670 255 156 29 chr1 93271095 93271333 -103924099 - B4 SINE B4 -16 276 9 4 1296 710 252 92 19 chr1 93271362 93271568 -103923864 - ID_B1 SINE B4 -2 222 2 4 1296 294 267 147 45 chr1 93273037 93273194 -103922238 + ID_B1 SINE B4 15 187 -37 4 1296 443 213 111 0 chr1 93273224 93273332 -103922100 + PB1D9 SINE Alu 1 120 0 4 1296 595 147 376 0 chr1 93273335 93273492 -103921940 + B3 SINE B2 1 216 0 4 1296 576 129 168 8 chr1 93275261 93275386 -103920046 - B1_Mur4 SINE Alu 0 150 6 4 1296 4201 39 0 0 chr1 93276137 93276623 -103918809 - L1Md_T LINE L1 0 6582 6097 4 1296 865 127 57 0 chr1 93277288 93277446 -103917986 - URR1A DNA MER1_type -1 225 59 4 1296 451 287 43 0 chr1 93277880 93277995 -103917437 - PB1 SINE Alu -7 120 1 4 1296 579 256 13 13 chr1 93278025 93278183 -103917249 + ID_B1 SINE B4 60 217 -7 4 1296 226 269 69 88 chr1 93279128 93279230 -103916202 + L2a LINE L2 3268 3367 -59 4 1296 255 85 16 48 chr1 93279562 93279624 -103915808 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 4 1296 282 328 48 16 chr1 93280086 93280210 -103915222 + ORR1E LTR MaLR 6 133 -226 4 1296 393 172 113 41 chr1 93280453 93280550 -103914882 + PB1D9 SINE Alu 16 119 -1 4 1296 724 211 135 38 chr1 93280602 93280802 -103914630 - B3 SINE B2 -17 199 1 4 1296 502 267 191 5 chr1 93281527 93281715 -103913717 - ID_B1 SINE B4 -1 223 1 4 1296 270 269 36 27 chr1 93282000 93282111 -103913321 - PB1D9 SINE Alu -8 112 1 4 1296 378 254 8 85 chr1 93282240 93282369 -103913063 + PB1D7 SINE Alu 1 119 -1 4 1296 947 175 132 0 chr1 93282401 93282590 -103912842 + B3 SINE B2 3 216 0 4 1296 473 246 27 0 chr1 93286637 93286747 -103908685 - PB1D10 SINE Alu -2 115 3 4 1296 1251 74 0 17 chr1 93286757 93286935 -103908497 - B2_Mm2 SINE B2 -20 175 1 4 1296 589 185 34 94 chr1 93288033 93288182 -103907250 - B1_Mur2 SINE Alu -1 148 9 4 1296 968 45 96 22 chr1 93288548 93288672 -103906760 + B1_Mm SINE Alu 2 138 -9 4 1296 194 0 39 0 chr1 93288672 93288698 -103906734 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1296 968 45 96 22 chr1 93288698 93288709 -103906723 + B1_Mm SINE Alu 139 147 0 4 1296 470 326 61 84 chr1 93288903 93289231 -103906201 + MER44B DNA MER2_type 30 349 -201 4 1296 1075 192 14 27 chr1 93289231 93289450 -103905982 - B3 SINE B2 0 216 1 4 1296 378 332 56 104 chr1 93289450 93289514 -103905918 + MER44B DNA MER2_type 350 404 -146 4 1296 257 182 0 0 chr1 93289622 93289666 -103905766 + B3A SINE B2 36 79 -119 4 1296 729 302 51 20 chr1 93289839 93289858 -103905574 - B4A SINE B4 -4 288 271 4 1296 483 18 0 0 chr1 93289858 93289914 -103905518 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1296 729 302 51 20 chr1 93289914 93290147 -103905285 - B4A SINE B4 -22 270 28 4 1296 784 57 0 0 chr1 93290246 93290351 -103905081 + B2_Mm2 SINE B2 2 106 -89 4 1296 207 0 0 0 chr1 93290351 93290374 -103905058 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1296 210 255 21 0 chr1 93290421 93290468 -103904964 + GA-rich Low_complexity Low_complexity 4 51 0 4 1296 489 329 55 13 chr1 93290658 93290895 -103904537 - MER2 DNA MER2_type -7 338 92 4 1296 876 212 79 5 chr1 93291111 93291301 -103904131 + B3 SINE B2 1 204 -12 4 1296 397 312 118 0 chr1 93291709 93291879 -103903553 - MIR SINE MIR -25 237 48 4 1296 649 197 14 43 chr1 93292348 93292486 -103902946 - B1_Mus1 SINE Alu -1 147 14 4 1296 228 351 26 0 chr1 93292859 93292936 -103902496 - ID4_ SINE ID 0 83 5 4 1296 253 254 17 0 chr1 93292971 93293030 -103902402 - ID4_ SINE ID -21 62 3 4 1296 214 143 20 20 chr1 93293338 93293388 -103902044 + A-rich Low_complexity Low_complexity 4 53 0 4 1296 210 143 0 0 chr1 93294049 93294084 -103901348 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 4 1296 198 0 0 0 chr1 93295321 93295343 -103900089 + (CGG)n Simple_repeat Simple_repeat 2 23 0 4 1296 21 0 0 0 chr1 93295406 93295427 -103900005 + GC_rich Low_complexity Low_complexity 1 21 0 4 1296 461 245 141 16 chr1 93295674 93295923 -103899509 + MER90 LTR ERV1 180 459 -116 4 1296 1939 108 15 60 chr1 93296239 93296575 -103898857 - ORR1A4 LTR MaLR -8 321 1 4 1296 395 238 55 37 chr1 93296744 93296853 -103898579 - PB1D10 SINE Alu -5 112 2 4 1296 230 306 69 86 chr1 93297103 93297278 -103898154 - ORR1E LTR MaLR -111 248 77 4 1296 684 272 39 58 chr1 93297453 93297711 -103897721 - L1MC LINE L1 -634 5699 5447 4 1296 337 304 195 50 chr1 93297710 93298229 -103897203 - L1ME3A LINE L1 -6 6167 5574 4 1296 362 293 138 0 chr1 93298244 93298367 -103897065 - B1F1 SINE Alu 0 149 10 4 1296 233 355 31 31 chr1 93298540 93298703 -103896729 + RMER4A LTR ERVK 25 187 -279 4 1296 377 284 237 19 chr1 93298961 93299320 -103896112 - L1MB4 LINE L1 -209 5971 5535 4 1296 216 0 0 0 chr1 93299862 93299886 -103895546 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1296 541 269 169 38 chr1 93300422 93300742 -103894690 + MLT1F2 LTR MaLR 193 554 -6 5 1296 26 30 0 0 chr1 93302942 93302975 -103892457 + AT_rich Low_complexity Low_complexity 1 33 0 5 1296 315 0 0 0 chr1 93302975 93303010 -103892422 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 5 1296 807 250 0 41 chr1 93303010 93303206 -103892226 - B3 SINE B2 -28 188 1 5 1296 221 171 0 0 chr1 93303212 93303253 -103892179 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 1296 549 151 176 0 chr1 93303259 93303378 -103892054 - B1_Mur2 SINE Alu -8 141 2 5 1296 25 0 0 0 chr1 93303386 93303411 -103892021 + AT_rich Low_complexity Low_complexity 1 25 0 5 1296 224 111 15 45 chr1 93303429 93303495 -103891937 + GA-rich Low_complexity Low_complexity 1 64 0 5 1296 243 277 178 0 chr1 93303495 93303596 -103891836 - RSINE1 SINE B4 -43 122 4 5 1296 213 39 0 0 chr1 93304831 93304857 -103890575 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 5 1296 805 192 7 0 chr1 93304870 93305016 -103890416 - B1_Mus1 SINE Alu -1 147 1 5 1296 1328 79 16 10 chr1 93305054 93305246 -103890186 - B2_Mm2 SINE B2 0 195 3 5 1296 384 22 0 0 chr1 93305258 93305303 -103890129 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1296 297 0 0 0 chr1 93305303 93305335 -103890097 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 5 1296 4272 177 57 14 chr1 93305373 93306216 -103889216 - MERVL_2A-int LTR ERVL -4878 883 5 5 1296 1788 163 146 90 chr1 93306216 93306715 -103888717 - MT2A LTR ERVL -6 527 1 5 1296 255 248 15 12 chr1 93306715 93306827 -103888605 + MLT1E2 LTR MaLR 576 676 -4 5 1296 213 288 0 15 chr1 93310099 93310166 -103885266 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 5 1296 351 0 0 0 chr1 93310960 93310999 -103884433 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1296 299 299 13 0 chr1 93312469 93312546 -103882886 + ID4_ SINE ID 5 82 -1 5 1296 24 0 0 0 chr1 93315147 93315171 -103880261 + GC_rich Low_complexity Low_complexity 1 24 0 5 1296 3249 23 13 3 chr1 93315380 93315772 -103879660 + MTA_Mm LTR MaLR 1 396 0 5 1296 446 272 18 0 chr1 93315785 93315899 -103879533 - PB1D10 SINE Alu 0 117 2 5 1296 294 329 88 63 chr1 93319569 93319597 -103875835 + B4 SINE B4 55 124 -168 5 1296 340 163 52 113 chr1 93319597 93319694 -103875738 + MT2B LTR ERVL 167 257 -344 5 1296 638 178 30 44 chr1 93319607 93319742 -103875690 + B1_Mur2 SINE Alu 17 149 0 5 1296 294 329 88 63 chr1 93319694 93319728 -103875704 + B4 SINE B4 125 217 -75 5 1296 310 71 71 0 chr1 93319742 93319798 -103875634 + (GAAAA)n Simple_repeat Simple_repeat 1 60 0 5 1296 627 203 0 8 chr1 93319840 93319959 -103875473 + PB1D9 SINE Alu 3 120 0 5 1296 186 167 0 0 chr1 93319960 93319996 -103875436 + A-rich Low_complexity Low_complexity 1 36 0 5 1296 2332 293 80 26 chr1 93321343 93322198 -103873234 + Lx8 LINE L1 6427 7327 -146 5 1296 390 21 0 0 chr1 93322235 93322282 -103873150 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1296 341 308 125 73 chr1 93322560 93322847 -103872585 + ORR1E LTR MaLR 58 359 0 5 1297 306 0 0 0 chr1 93323365 93323399 -103872033 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 5 1297 264 265 39 39 chr1 93324128 93324173 -103871259 + B4A SINE B4 44 88 -204 5 1297 377 275 9 27 chr1 93324173 93324285 -103871147 + PB1D7 SINE Alu 4 113 -7 5 1297 818 257 102 51 chr1 93324998 93325273 -103870159 - B4A SINE B4 0 292 4 5 1297 846 246 53 80 chr1 93325597 93325897 -103869535 - B4A SINE B4 0 292 1 5 1297 305 24 24 0 chr1 93326324 93326366 -103869066 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1297 1144 186 14 18 chr1 93326385 93326604 -103868828 + URR1B DNA MER1_type 8 225 0 5 1297 22 56 0 0 chr1 93326729 93326765 -103868667 + AT_rich Low_complexity Low_complexity 1 36 0 5 1297 252 272 24 24 chr1 93326807 93326890 -103868542 - RSINE1 SINE B4 -82 83 1 5 1297 684 181 112 8 chr1 93328186 93328320 -103867112 - B1_Mur1 SINE Alu -1 148 1 5 1297 279 0 0 0 chr1 93328342 93328373 -103867059 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 5 1297 839 127 7 27 chr1 93328921 93329067 -103866365 - B1_Mur4 SINE Alu -2 148 6 5 1297 794 193 193 28 chr1 93329097 93329278 -103866154 - B3 SINE B2 -5 211 1 5 1297 220 211 19 0 chr1 93329584 93329636 -103865796 - ID4 SINE ID -15 68 16 5 1297 271 204 9 131 chr1 93330299 93330406 -103865026 + MT2B LTR ERVL 164 257 -344 5 1297 688 154 0 16 chr1 93330316 93330441 -103864991 + B1_Mur3 SINE Alu 17 139 -10 5 1297 2214 125 3 9 chr1 93330502 93330850 -103864582 + ORR1B1 LTR MaLR 41 386 -8 5 1297 229 345 8 34 chr1 93333100 93333217 -103862215 + GA-rich Low_complexity Low_complexity 2 115 0 5 1297 243 139 0 0 chr1 93334515 93334551 -103860881 + U2 snRNA snRNA 1 36 -152 5 1297 470 252 0 0 chr1 93337634 93337745 -103857687 - PB1D9 SINE Alu -9 111 1 5 1297 357 357 149 48 chr1 93339450 93339847 -103855585 - MLT-int LTR MaLR -207 1528 1092 5 1297 260 359 89 23 chr1 93340157 93340371 -103855061 - MLT-int LTR MaLR -1485 250 23 5 1297 298 208 131 30 chr1 93340401 93340500 -103854932 - MLT1A1 LTR MaLR -298 110 2 5 1297 745 225 129 6 chr1 93344195 93344365 -103851067 + B3 SINE B2 3 193 -23 5 1297 468 51 0 0 chr1 93344366 93344425 -103851007 + (CATA)n Simple_repeat Simple_repeat 4 62 0 5 1297 979 226 5 56 chr1 93344436 93344633 -103850799 + ID_B1 SINE B4 22 208 -16 5 1297 540 264 38 63 chr1 93345050 93345208 -103850224 + RSINE1 SINE B4 4 157 -8 5 1297 863 153 0 14 chr1 93346685 93346831 -103848601 + B3 SINE B2 70 213 -3 5 1297 358 257 0 0 chr1 93347466 93347540 -103847892 + ID4 SINE ID 1 74 -9 5 1297 438 254 0 73 chr1 93349771 93349894 -103845538 - PB1D10 SINE Alu -3 114 1 5 1297 216 0 0 0 chr1 93350318 93350342 -103845090 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1297 206 291 48 48 chr1 93351826 93351909 -103843523 + MIR SINE MIR 108 190 -72 5 1297 195 174 62 42 chr1 93353386 93353434 -103841998 - L2b LINE L2 -18 3357 3309 5 1297 252 225 121 22 chr1 93353490 93353581 -103841851 + RLTR13D3 LTR ERVK 605 704 -410 5 1297 446 258 194 8 chr1 93353582 93353711 -103841721 + RSINE1 SINE B4 3 155 -10 5 1297 189 0 0 0 chr1 93354654 93354675 -103840757 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1297 247 222 60 36 chr1 93355477 93355561 -103839871 + MIRm SINE MIR 82 167 -109 5 1297 210 236 56 0 chr1 93355700 93355772 -103839660 + (CCGCG)n Simple_repeat Simple_repeat 1 76 0 5 1297 21 0 0 0 chr1 93356087 93356108 -103839324 + GC_rich Low_complexity Low_complexity 1 21 0 5 1297 221 0 0 33 chr1 93357739 93357769 -103837663 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 5 1297 338 261 175 6 chr1 93357769 93357798 -103837634 - B2_Mm2 SINE B2 0 195 162 5 1297 1268 41 0 0 chr1 93357798 93357945 -103837487 - B1_Mm SINE Alu 0 147 1 5 1297 338 261 175 6 chr1 93357945 93358081 -103837351 - B2_Mm2 SINE B2 -34 161 3 5 1297 309 171 49 73 chr1 93358529 93358611 -103836821 - B3 SINE B2 0 216 137 5 1297 408 289 39 0 chr1 93358597 93358701 -103836731 - ORR1E LTR MaLR -249 110 3 5 1297 248 373 63 51 chr1 93358786 93359093 -103836339 + MLT1A0 LTR MaLR 1 306 -53 5 1297 208 295 77 0 chr1 93359960 93360038 -103835394 - MIRb SINE MIR -39 229 146 5 1297 366 348 99 45 chr1 93360722 93361014 -103834418 - MLT1A1 LTR MaLR -30 378 71 5 1297 374 332 165 21 chr1 93361146 93361334 -103834098 + MER58C DNA MER1_type 1 215 0 5 1297 420 20 0 0 chr1 93362261 93362310 -103833122 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1297 405 0 0 0 chr1 93362310 93362354 -103833078 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 5 1297 219 147 0 0 chr1 93363099 93363133 -103832299 - L4 LINE RTE -1780 249 216 5 1297 574 284 47 0 chr1 93363299 93363447 -103831985 + RSINE1 SINE B4 3 157 -8 5 1297 195 42 0 0 chr1 93363461 93363485 -103831947 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1297 240 35 0 0 chr1 93363761 93363790 -103831642 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 1297 1179 69 0 0 chr1 93363790 93363935 -103831497 - B1_Mus1 SINE Alu -3 145 1 5 1297 620 103 31 0 chr1 93363964 93364061 -103831371 - B2_Mm2 SINE B2 0 195 96 5 1297 255 125 0 0 chr1 93364200 93364240 -103831192 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1297 791 108 16 16 chr1 93364348 93364470 -103830962 + B1_Mur3 SINE Alu 27 148 -1 5 1297 3301 58 5 8 chr1 93364778 93365179 -103830253 - MTB LTR MaLR 0 400 1 5 1297 6138 76 28 86 chr1 93365179 93366183 -103829249 - MTB-int LTR MaLR 0 1098 153 5 1297 387 0 0 0 chr1 93366183 93366226 -103829206 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 5 1297 1034 117 6 0 chr1 93366732 93366895 -103828537 - MTB-int LTR MaLR -933 165 2 5 1297 3188 59 31 0 chr1 93366896 93367284 -103828148 - MTB LTR MaLR 0 400 1 5 1297 1164 178 1 6 chr1 93367284 93367510 -103827922 - Lx9 LINE L1 -689 6955 6593 5 1297 212 86 29 0 chr1 93367699 93367734 -103827698 + (GGA)n Simple_repeat Simple_repeat 2 37 0 5 1297 2831 45 0 6 chr1 93367810 93368149 -103827283 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1297 53723 22 18 7 chr1 93368149 93374552 -103820880 - IAPEz-int LTR ERVK 0 6481 8 5 1297 2875 42 0 3 chr1 93374552 93374890 -103820542 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1297 197 83 0 27 chr1 93375618 93375655 -103819777 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1297 889 222 67 5 chr1 93375657 93375852 -103819580 - B3 SINE B2 -4 212 6 5 1297 261 57 0 0 chr1 93376232 93376267 -103819165 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1297 200 217 22 0 chr1 93377350 93377396 -103818036 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1297 768 305 126 20 chr1 93377407 93377661 -103817771 - B4A SINE B4 -6 286 6 5 1297 794 178 59 0 chr1 93377659 93377794 -103817638 + B1_Mur4 SINE Alu 8 150 0 5 1297 316 348 62 37 chr1 93377662 93377823 -103817609 + B4A SINE B4 95 259 -33 6 1297 271 191 28 42 chr1 93377872 93377943 -103817489 - ORR1D1 LTR MaLR -303 71 2 6 1297 391 289 49 67 chr1 93378008 93378316 -103817116 - B4A SINE B4 -18 274 9 6 1297 266 264 82 8 chr1 93378323 93378445 -103816987 - L1M LINE L1 -745 5429 5299 6 1297 181 219 49 0 chr1 93378483 93378524 -103816908 + L2 LINE L2 348 390 -3029 6 1297 786 50 0 0 chr1 93378908 93379007 -103816425 + (GGGAA)n Simple_repeat Simple_repeat 4 102 0 6 1297 273 296 112 0 chr1 93381041 93381139 -103814293 + MTE2a LTR MaLR 1 109 -270 6 1297 355 62 0 129 chr1 93381314 93381360 -103814072 - MusHAL1 LINE L1 -1 2711 2676 6 1297 1288 122 11 0 chr1 93381360 93381549 -103813883 + B2_Mm1t SINE B2 2 192 -1 6 1297 355 62 0 129 chr1 93381549 93381595 -103813837 - MusHAL1 LINE L1 -37 2675 2631 6 1297 1088 231 37 101 chr1 93381595 93381922 -103813510 + MTE2a LTR MaLR 74 379 0 6 1297 189 0 0 0 chr1 93382512 93382533 -103812899 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 6 1297 2023 151 128 5 chr1 93382780 93383147 -103812285 + MTD LTR MaLR 8 419 0 6 1297 1229 271 62 0 chr1 93383147 93383470 -103811962 + MTE2b LTR MaLR 33 375 -4 6 1297 1483 60 16 0 chr1 93383750 93383935 -103811497 - B2_Mm2 SINE B2 -6 189 2 6 1297 768 297 116 0 chr1 93383961 93384193 -103811239 + MTD LTR MaLR 10 268 -151 6 1297 1231 62 0 0 chr1 93384995 93385141 -103810291 + B1_Mus2 SINE Alu 2 147 0 6 1297 180 65 42 42 chr1 93385167 93385215 -103810217 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1297 225 0 0 0 chr1 93385941 93385966 -103809466 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1297 216 0 0 0 chr1 93386103 93386127 -103809305 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1297 387 141 0 0 chr1 93386552 93386616 -103808816 + (TTC)n Simple_repeat Simple_repeat 1 64 0 6 1297 320 228 188 12 chr1 93386619 93386699 -103808733 - B3A SINE B2 -103 95 2 6 1297 444 37 0 0 chr1 93387491 93387545 -103807887 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1297 415 230 122 61 chr1 93387545 93387572 -103807860 - MLT1B LTR MaLR -165 225 200 6 1297 261 109 0 0 chr1 93387572 93387618 -103807814 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1297 415 230 122 61 chr1 93387618 93387738 -103807694 - MLT1B LTR MaLR -191 199 69 6 1297 303 266 0 0 chr1 93387819 93387883 -103807549 - B3A SINE B2 -127 71 8 6 1297 240 263 97 39 chr1 93387876 93387979 -103807453 - MTD LTR MaLR -305 114 6 6 1297 512 290 133 12 chr1 93387989 93388485 -103806947 + L1MA8 LINE L1 5737 6302 -10 6 1297 245 268 127 32 chr1 93388813 93389002 -103806430 + RMER17C LTR ERVK 16 222 -188 6 1297 432 0 0 0 chr1 93390102 93390150 -103805282 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1297 306 0 0 0 chr1 93390695 93390729 -103804703 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1297 226 331 30 12 chr1 93391489 93391654 -103803778 + G-rich Low_complexity Low_complexity 5 172 0 6 1297 189 0 0 0 chr1 93393695 93393716 -103801716 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1297 342 0 0 0 chr1 93394673 93394711 -103800721 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1297 728 255 135 31 chr1 93394843 93395102 -103800330 + B4 SINE B4 1 286 -6 6 1297 217 250 0 0 chr1 93395138 93395182 -103800250 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 6 1297 475 263 67 15 chr1 93395206 93395341 -103800091 + B1F1 SINE Alu 1 142 -7 6 1297 249 282 64 0 chr1 93395381 93395459 -103799973 + PB1D10 SINE Alu 31 113 -4 6 1297 22 0 0 0 chr1 93395678 93395700 -103799732 + AT_rich Low_complexity Low_complexity 1 22 0 6 1297 702 274 11 53 chr1 93395844 93396033 -103799399 - B3A SINE B2 -17 181 1 6 1297 510 300 71 0 chr1 93396667 93396907 -103798525 - L1MB2 LINE L1 -297 5874 5618 6 1297 186 118 0 0 chr1 93397667 93397701 -103797731 + (GGAGAA)n Simple_repeat Simple_repeat 1 34 0 6 1297 258 223 29 7 chr1 93397704 93397844 -103797588 + (CAGAGA)n Simple_repeat Simple_repeat 5 147 0 6 1297 888 228 23 28 chr1 93398043 93398260 -103797172 - B3 SINE B2 0 216 1 6 1297 459 266 63 38 chr1 93398314 93398498 -103796934 - B3A SINE B2 -3 192 1 6 1297 2167 147 75 87 chr1 93398507 93398739 -103796693 - MTC LTR MaLR 0 421 210 6 1297 1102 75 0 40 chr1 93398739 93398891 -103796541 - B1_Mus2 SINE Alu 0 147 2 6 1297 2167 147 75 87 chr1 93398891 93399084 -103796348 - MTC LTR MaLR -212 209 1 6 1297 347 309 166 41 chr1 93399249 93399394 -103796038 - RSINE1 SINE B4 0 165 3 6 1297 218 329 43 0 chr1 93399521 93399591 -103795841 + L2b LINE L2 3294 3366 -9 6 1297 728 299 214 13 chr1 93400136 93400444 -103794988 - MTEa LTR MaLR -6 373 4 6 1297 799 232 245 17 chr1 93402097 93402399 -103793033 - MTD LTR MaLR 0 419 49 6 1297 770 180 16 0 chr1 93402394 93402522 -103792910 - B1_Mur3 SINE Alu -1 148 19 6 1297 304 237 39 13 chr1 93402524 93402601 -103792831 - MTD LTR MaLR -342 79 1 6 1297 230 310 59 10 chr1 93402601 93402699 -103792733 + RMER12 LTR ERVK 734 836 -486 6 1297 504 286 87 71 chr1 93402705 93402955 -103792477 - B4 SINE B4 -2 290 37 6 1297 467 268 363 31 chr1 93402955 93403238 -103792194 - MTE2b LTR MaLR 0 379 3 6 1297 224 93 93 0 chr1 93403238 93403278 -103792154 - B4A SINE B4 -245 47 4 6 1297 306 0 0 0 chr1 93403550 93403584 -103791848 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1297 474 212 51 60 chr1 93405290 93405430 -103790002 - PB1D9 SINE Alu -3 144 17 6 1297 240 35 0 0 chr1 93405587 93405616 -103789816 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1297 333 0 0 0 chr1 93405616 93405652 -103789780 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1297 207 0 0 0 chr1 93405652 93405674 -103789758 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1297 364 173 61 96 chr1 93405760 93405875 -103789557 - PB1D10 SINE Alu -2 115 5 6 1297 306 0 0 0 chr1 93405911 93405945 -103789487 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1297 579 66 0 0 chr1 93408344 93408420 -103787012 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 6 1297 464 268 26 26 chr1 93408420 93408527 -103786905 - PB1D7 SINE Alu -11 109 1 6 1297 539 280 39 26 chr1 93408735 93408889 -103786543 + RSINE1 SINE B4 3 158 -7 6 1297 206 140 137 20 chr1 93409901 93409952 -103785480 - L3 LINE CR1 -378 4111 4055 6 1297 194 300 38 0 chr1 93410055 93410215 -103785217 + CT-rich Low_complexity Low_complexity 4 169 0 6 1297 477 283 9 0 chr1 93410220 93410333 -103785099 - PB1D10 SINE Alu -2 115 2 6 1297 237 270 67 13 chr1 93411069 93411144 -103784288 + RSINE1 SINE B4 59 137 -28 6 1297 369 341 28 28 chr1 93411213 93411355 -103784077 + ID_B1 SINE B4 81 222 -2 6 1297 348 165 212 20 chr1 93414581 93414680 -103780752 - PB1D9 SINE Alu 0 120 3 6 1297 347 294 66 95 chr1 93415002 93415173 -103780259 - L1MEf LINE L1 -4040 2160 1998 6 1297 1296 20 0 0 chr1 93415173 93415319 -103780113 - B1_Mm SINE Alu 0 147 2 6 1297 347 294 66 95 chr1 93415319 93415388 -103780044 - L1MEf LINE L1 -4203 1997 1928 6 1297 471 263 16 56 chr1 93415477 93415602 -103779830 + PB1D9 SINE Alu 1 120 0 6 1297 193 333 38 13 chr1 93417297 93417376 -103778056 + L2 LINE L2 405 485 -2934 6 1297 388 269 21 11 chr1 93418030 93418124 -103777308 - PB1D10 SINE Alu -11 106 12 6 1297 291 337 20 30 chr1 93418038 93418139 -103777293 - ID_B1 SINE B4 -45 179 80 6 1297 331 308 89 15 chr1 93418225 93418360 -103777072 - B1F2 SINE Alu -2 147 3 6 1297 216 67 0 0 chr1 93418435 93418465 -103776967 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 6 1297 826 298 75 19 chr1 93418512 93418974 -103776458 - Lx8 LINE L1 -438 7035 6501 6 1297 287 257 14 0 chr1 93419998 93420068 -103775364 + MTEb LTR MaLR 4 74 -296 6 1297 560 189 0 0 chr1 93420148 93420238 -103775194 + B1_Mur4 SINE Alu 59 148 -2 6 1297 230 0 33 0 chr1 93420626 93420656 -103774776 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1297 1596 21 32 0 chr1 93421182 93421369 -103774063 + B2_Mm1a SINE B2 1 193 0 6 1297 278 295 35 35 chr1 93421567 93421683 -103773749 - YREP_Mm Unknown Unknown -1491 321 206 6 1297 720 157 83 0 chr1 93421584 93421705 -103773727 + ID_B1 SINE B4 94 224 0 6 1297 385 308 61 14 chr1 93421826 93421974 -103773458 + MTEb LTR MaLR 225 379 0 6 1297 402 299 121 19 chr1 93422121 93422435 -103772997 - L1MD LINE L1 -749 5397 5052 6 1297 198 103 0 0 chr1 93422935 93422964 -103772468 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 6 1297 587 227 55 28 chr1 93422971 93423116 -103772316 - B1_Mur1 SINE Alu 0 149 1 6 1297 348 240 198 22 chr1 93423156 93423378 -103772054 - Lx9 LINE L1 -16 7628 7368 6 1297 266 191 88 8 chr1 93423939 93424024 -103771408 + ID4_ SINE ID 2 91 -61 6 1297 189 107 0 0 chr1 93425693 93425721 -103769711 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1297 297 89 0 0 chr1 93426325 93426370 -103769062 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1297 1019 53 26 0 chr1 93426370 93426520 -103768912 + (GA)n Simple_repeat Simple_repeat 1 155 0 6 1297 465 291 56 94 chr1 93426520 93426803 -103768629 + B4A SINE B4 17 292 0 6 1297 478 206 115 31 chr1 93427434 93427625 -103767807 - RLTR40 LTR ERVK -99 718 512 6 1297 560 196 244 6 chr1 93427838 93428002 -103767430 + B3 SINE B2 2 204 -12 6 1297 852 222 87 70 chr1 93428153 93428439 -103766993 - B4A SINE B4 0 292 2 6 1297 356 360 23 64 chr1 93429770 93429942 -103765490 - ORR1E LTR MaLR -174 185 21 6 1297 561 251 117 0 chr1 93430999 93431162 -103764270 + B3A SINE B2 1 182 -16 6 1297 244 230 88 9 chr1 93431310 93431335 -103764097 + ID_B1 SINE B4 79 124 -100 6 1297 313 122 0 0 chr1 93431335 93431376 -103764056 + PB1D7 SINE Alu 12 52 -68 7 1297 244 230 88 9 chr1 93431376 93431390 -103764042 + ID_B1 SINE B4 125 154 -70 6 1297 296 143 0 18 chr1 93432594 93432651 -103762781 + C-rich Low_complexity Low_complexity 1 56 0 7 1297 787 194 0 0 chr1 93432658 93432792 -103762640 - B1_Mus2 SINE Alu -5 142 9 7 1297 465 178 36 90 chr1 93432698 93432809 -103762623 - MT2B LTR ERVL -344 257 153 7 1297 267 137 158 20 chr1 93433352 93433454 -103761978 - Lx8 LINE L1 -28 7445 7348 7 1297 696 217 0 65 chr1 93433586 93433660 -103761772 + B1_Mus1 SINE Alu 5 74 -74 7 1297 4004 59 65 24 chr1 93433660 93434198 -103761234 - LTRIS2 LTR ERV1 0 564 5 7 1297 696 217 0 65 chr1 93434198 93434276 -103761156 + B1_Mus1 SINE Alu 75 147 -1 7 1297 212 145 242 0 chr1 93434422 93434484 -103760948 + B3 SINE B2 1 77 -139 7 1297 2658 91 5 77 chr1 93434494 93434933 -103760499 + RLTR9F LTR ERVK 2 408 -7 7 1297 345 244 58 16 chr1 93434935 93435034 -103760398 + B3A SINE B2 72 175 -23 7 1297 594 103 0 0 chr1 93435034 93435121 -103760311 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1297 345 244 58 16 chr1 93435121 93435142 -103760290 + B3A SINE B2 176 196 -2 7 1297 431 242 96 8 chr1 93435146 93435271 -103760161 + B1_Mur1 SINE Alu 2 137 -12 7 1297 495 0 0 0 chr1 93435639 93435694 -103759738 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1297 389 262 62 0 chr1 93436037 93436182 -103759250 - L1MB3 LINE L1 -201 5982 5829 7 1297 340 309 104 46 chr1 93439383 93439624 -103755808 - L1M5 LINE L1 -1406 4740 4486 7 1297 378 0 0 0 chr1 93439689 93439731 -103755701 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1297 309 51 0 0 chr1 93439731 93439770 -103755662 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1297 705 275 86 75 chr1 93439770 93440037 -103755395 - B4A SINE B4 -22 270 1 7 1297 247 299 11 22 chr1 93440094 93440183 -103755249 - MLT1A1 LTR MaLR -4 404 317 7 1297 21 57 0 0 chr1 93440498 93440533 -103754899 + AT_rich Low_complexity Low_complexity 1 35 0 7 1297 387 0 0 0 chr1 93441108 93441151 -103754281 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 7 1297 841 204 0 0 chr1 93441151 93441288 -103754144 - B1_Mur2 SINE Alu -12 137 1 7 1297 679 200 50 84 chr1 93441290 93441492 -103753940 - B3A SINE B2 0 198 4 7 1297 445 226 0 12 chr1 93442014 93442099 -103753333 + B3A SINE B2 2 85 -113 7 1297 258 263 0 38 chr1 93442336 93442415 -103753017 + CT-rich Low_complexity Low_complexity 2 77 0 7 1297 241 174 14 14 chr1 93442498 93442568 -103752864 + CT-rich Low_complexity Low_complexity 2 71 0 7 1297 958 145 21 0 chr1 93442577 93442722 -103752710 - B1_Mus1 SINE Alu 0 148 1 7 1297 373 221 59 0 chr1 93443298 93443366 -103752066 + ID4 SINE ID 3 74 -9 7 1297 1398 45 96 0 chr1 93443933 93444110 -103751322 - B2_Mm2 SINE B2 0 195 2 7 1297 318 245 47 113 chr1 93444247 93444353 -103751079 - RSINE1 SINE B4 0 165 67 7 1297 579 199 48 34 chr1 93444575 93444721 -103750711 + B1_Mur1 SINE Alu 2 149 0 7 1297 216 182 0 0 chr1 93444799 93444843 -103750589 + (CCTG)n Simple_repeat Simple_repeat 1 44 0 7 1297 2509 71 6 58 chr1 93445343 93445688 -103749744 - ORR1A2 LTR MaLR 0 327 1 7 1297 664 287 0 0 chr1 93446029 93446165 -103749267 - RSINE1 SINE B4 -28 137 2 7 1297 372 362 112 44 chr1 93446205 93446589 -103748843 - L1M5 LINE L1 -1115 5031 4622 7 1297 324 327 161 43 chr1 93446814 93447162 -103748270 - L1MC LINE L1 -1806 4340 3952 7 1297 357 307 94 50 chr1 93447650 93447852 -103747580 - L1MC LINE L1 -2208 3938 3728 7 1297 995 164 0 0 chr1 93447864 93448010 -103747422 - B1_Mus2 SINE Alu 0 147 2 7 1297 286 343 28 0 chr1 93448226 93448334 -103747098 - MER2 DNA MER2_type -8 337 227 7 1297 529 228 278 0 chr1 93449111 93449273 -103746159 + B3 SINE B2 10 216 0 7 1297 643 241 191 4 chr1 93449398 93449644 -103745788 - B4 SINE B4 0 292 1 7 1297 893 157 7 0 chr1 93449786 93449926 -103745506 - B1_Mus1 SINE Alu -5 143 3 7 1297 25 31 0 0 chr1 93449998 93450030 -103745402 + AT_rich Low_complexity Low_complexity 1 32 0 7 1297 486 288 50 0 chr1 93450048 93450187 -103745245 - RSINE1 SINE B4 -17 148 3 7 1297 1692 21 0 0 chr1 93450345 93450532 -103744900 + B2_Mm1a SINE B2 2 188 -5 7 1297 400 200 17 0 chr1 93453573 93453688 -103741744 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 7 1298 187 333 0 16 chr1 93454777 93454838 -103740594 + L4 LINE RTE 1162 1221 -808 7 1298 315 222 27 14 chr1 93455102 93455175 -103740257 - ID4 SINE ID -9 74 1 7 1298 324 0 0 0 chr1 93455626 93455662 -103739770 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 7 1298 201 132 0 0 chr1 93457005 93457043 -103738389 + (G)n Simple_repeat Simple_repeat 1 38 0 7 1298 363 277 99 0 chr1 93457172 93457273 -103738159 + HAL1 LINE L1 1686 1796 -711 7 1298 235 316 143 37 chr1 93457657 93457818 -103737614 - LTR41 LTR ERVL -563 205 28 7 1298 347 245 108 0 chr1 93458903 93459005 -103736427 + PB1D10 SINE Alu 4 116 -1 7 1298 289 264 22 33 chr1 93459230 93459320 -103736112 - MER2 DNA MER2_type -2 343 255 7 1298 505 234 0 78 chr1 93459354 93459470 -103735962 - PB1D7 SINE Alu -13 107 1 7 1298 741 272 74 37 chr1 93459479 93459723 -103735709 - MER2 DNA MER2_type -92 253 1 7 1298 252 86 0 0 chr1 93461018 93461053 -103734379 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 7 1298 424 315 50 35 chr1 93461970 93462216 -103733216 - MLT1A0 LTR MaLR -55 310 60 7 1298 258 274 27 27 chr1 93462415 93462490 -103732942 - MER53 DNA hAT -22 171 97 7 1298 817 259 56 5 chr1 93462859 93463057 -103732375 - B3 SINE B2 -7 209 2 7 1298 856 274 14 98 chr1 93463183 93463275 -103732157 - B4A SINE B4 -5 287 206 7 1298 983 233 14 5 chr1 93463275 93463482 -103731950 - B3 SINE B2 -6 210 2 7 1298 856 274 14 98 chr1 93463482 93463676 -103731756 - B4A SINE B4 -87 205 25 7 1298 323 235 37 148 chr1 93463670 93463805 -103731627 + MTD LTR MaLR 300 419 0 7 1298 1970 155 35 30 chr1 93463814 93464186 -103731246 - ORR1B1 LTR MaLR -20 374 1 7 1298 421 306 103 21 chr1 93464216 93464593 -103730839 - L1MDa LINE L1 -5039 1594 1187 7 1298 2952 140 42 31 chr1 93464943 93465490 -103729942 + RLTR31_Mur LTR ERVK 1 553 0 7 1298 1148 153 119 0 chr1 93466155 93466357 -103729075 + URR1A DNA MER1_type 1 226 0 7 1298 433 306 0 9 chr1 93466534 93466643 -103728789 + PB1D7 SINE Alu 2 109 -11 7 1298 699 322 53 38 chr1 93468665 93469007 -103726425 + MLT1A0 LTR MaLR 12 358 -7 7 1298 465 314 146 39 chr1 93469194 93469558 -103725874 - MLT1F-int LTR MaLR -331 1158 756 7 1298 925 278 61 25 chr1 93469617 93469897 -103725535 - B4A SINE B4 -1 291 2 7 1298 1140 6 23 29 chr1 93469914 93470088 -103725344 + (TCTCC)n Simple_repeat Simple_repeat 2 174 0 7 1298 255 284 13 51 chr1 93470132 93470210 -103725222 - RSINE1 SINE B4 0 165 91 7 1298 407 341 56 51 chr1 93470193 93470409 -103725023 - B4 SINE B4 -75 217 1 7 1298 1062 171 80 5 chr1 93470887 93471087 -103724345 - B3 SINE B2 0 216 2 7 1298 236 292 75 0 chr1 93471132 93471238 -103724194 - L1MEg LINE L1 -5537 547 434 7 1298 579 308 92 19 chr1 93472180 93472494 -103722938 + MLT1B LTR MaLR 38 374 -16 7 1298 225 250 0 0 chr1 93472624 93472672 -103722760 - ID4 SINE ID -34 49 2 7 1298 744 271 88 4 chr1 93472690 93472920 -103722512 + MTD LTR MaLR 107 367 -52 7 1298 372 278 0 0 chr1 93472925 93473058 -103722374 + (TA)n Simple_repeat Simple_repeat 1 133 0 7 1298 321 26 0 0 chr1 93473278 93473316 -103722116 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1298 240 35 0 0 chr1 93473316 93473344 -103722088 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1298 231 36 0 0 chr1 93474229 93474257 -103721175 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1298 651 268 34 0 chr1 93477291 93477470 -103717962 + MTEa LTR MaLR 190 374 -5 7 1298 252 86 0 0 chr1 93478315 93478350 -103717082 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1298 225 0 0 0 chr1 93478357 93478382 -103717050 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 7 1298 681 222 78 69 chr1 93478387 93478605 -103716827 - B4 SINE B4 -68 224 5 7 1298 383 317 75 34 chr1 93478840 93478987 -103716445 + ID_B1 SINE B4 17 169 -55 7 1298 426 108 0 0 chr1 93479004 93479069 -103716363 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 7 1298 1819 142 165 46 chr1 93479319 93479688 -103715744 - MTC LTR MaLR -8 413 1 7 1298 211 339 27 25 chr1 93479777 93479900 -103715532 - MIR SINE MIR -104 164 46 7 1298 440 310 49 7 chr1 93480776 93480919 -103714513 - B1F SINE Alu 0 149 1 7 1298 397 365 25 19 chr1 93480777 93480939 -103714493 - ID_B1 SINE B4 0 224 62 7 1298 341 280 22 11 chr1 93482655 93482831 -103712601 - MLT1A0 LTR MaLR -22 483 267 7 1298 226 237 68 0 chr1 93482905 93482964 -103712468 + MLT1D LTR MaLR 23 85 -420 7 1298 551 235 129 6 chr1 93483055 93483226 -103712206 - MLT1A0 LTR MaLR -125 240 49 7 1298 606 201 26 146 chr1 93483230 93483422 -103712010 + MTE2a LTR MaLR 1 169 -210 7 1298 230 0 33 0 chr1 93483621 93483651 -103711781 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1298 334 229 37 141 chr1 93483652 93483815 -103711617 - RMER10A LTR ERVL -285 157 12 7 1298 997 191 64 28 chr1 93483804 93484048 -103711384 + MTE2a LTR MaLR 153 392 -15 7 1298 22 0 0 0 chr1 93484612 93484634 -103710798 + AT_rich Low_complexity Low_complexity 1 22 0 7 1298 2063 124 111 9 chr1 93484921 93485254 -103710178 - ORR1B2 LTR MaLR 0 367 1 7 1298 608 302 26 16 chr1 93485278 93485470 -103709962 + B4A SINE B4 99 292 0 7 1298 1226 90 0 6 chr1 93485991 93486170 -103709262 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 1298 357 292 0 109 chr1 93487886 93487999 -103707433 - L1M4 LINE L1 -2569 5426 5323 7 1298 268 296 42 0 chr1 93487999 93488070 -103707362 - ID4_ SINE ID -7 76 3 8 1298 357 292 0 109 chr1 93488070 93488121 -103707311 - L1M4 LINE L1 -2673 5322 5280 7 1298 1557 229 71 35 chr1 93488123 93488545 -103706887 + Lx6 LINE L1 6995 7431 -29 8 1298 944 107 14 14 chr1 93488545 93488687 -103706745 + B1_Mur4 SINE Alu 9 150 0 8 1298 349 133 78 8 chr1 93488693 93488822 -103706610 + (CAAAC)n Simple_repeat Simple_repeat 2 139 0 8 1298 347 200 46 0 chr1 93489021 93489086 -103706346 + BC1_Mm scRNA scRNA 3 70 -82 8 1298 304 250 107 0 chr1 93489086 93489105 -103706327 + ID_B1 SINE B4 3 95 -129 8 1298 1047 307 112 44 chr1 93489201 93490509 -103704923 - L1M4 LINE L1 -1884 4262 2849 7 1298 408 368 76 119 chr1 93490609 93490869 -103704563 + MLT1G LTR MaLR 21 289 -302 8 1298 812 229 316 3 chr1 93490869 93491025 -103704407 - ORR1D1 LTR MaLR 0 374 165 8 1298 453 19 0 0 chr1 93491025 93491079 -103704353 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1298 812 229 316 3 chr1 93491079 93491207 -103704225 - ORR1D1 LTR MaLR -210 164 2 8 1298 408 368 76 119 chr1 93491207 93491510 -103703922 + MLT1G LTR MaLR 290 560 -31 8 1298 2503 99 151 0 chr1 93491510 93491874 -103703558 - MTC LTR MaLR 0 421 3 8 1298 239 288 0 0 chr1 93492701 93492760 -103702672 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1298 249 139 0 0 chr1 93492787 93492830 -103702602 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1298 182 284 159 35 chr1 93493904 93494017 -103701415 - MIRc SINE MIR -98 170 44 8 1298 224 312 12 49 chr1 93494970 93495051 -103700381 + L3 LINE CR1 4101 4178 -311 8 1298 356 344 20 55 chr1 93495279 93495479 -103699953 - ORR1E LTR MaLR -166 193 1 8 1298 861 135 55 28 chr1 93495594 93495739 -103699693 - B1_Mur3 SINE Alu 0 149 1 8 1298 679 258 20 13 chr1 93495835 93495988 -103699444 - RSINE1 SINE B4 0 165 12 8 1298 278 286 103 19 chr1 93498490 93498597 -103696835 - MIRb SINE MIR -131 137 22 8 1298 532 176 35 55 chr1 93500149 93500348 -103695084 - RMER17C LTR ERVK -136 274 80 1 1298 240 311 112 86 chr1 93500536 93500733 -103694699 - MLT1J2 LTR MaLR -188 260 59 2 1298 333 0 0 0 chr1 93500952 93500989 -103694443 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1298 432 0 0 0 chr1 93500989 93501036 -103694396 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1298 245 221 152 95 chr1 93501377 93501394 -103694038 + MT2B2 LTR ERVL 143 250 -331 5 1298 409 181 71 24 chr1 93501394 93501479 -103693953 + PB1D10 SINE Alu 6 94 -23 6 1298 343 287 69 9 chr1 93503322 93503438 -103691994 - MLT1K LTR MaLR -329 266 144 7 1298 263 297 61 129 chr1 93503761 93503908 -103691524 - ORR1E LTR MaLR -149 210 74 8 1298 1169 211 0 9 chr1 93504664 93504879 -103690553 + B3 SINE B2 1 213 -3 9 1298 958 250 80 136 chr1 93507476 93507874 -103687558 - MTEa LTR MaLR 0 379 4 1 1298 591 62 0 0 chr1 93509427 93509507 -103685925 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1298 758 204 228 31 chr1 93509513 93509741 -103685691 - B4 SINE B4 -18 274 2 1 1298 397 284 101 0 chr1 93510423 93510532 -103684900 - PB1D7 SINE Alu 0 120 1 1 1298 673 244 113 5 chr1 93511351 93511536 -103683896 + MLT1B LTR MaLR 106 310 -80 1 1298 207 0 0 0 chr1 93513905 93513928 -103681504 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1298 345 374 0 22 chr1 93513933 93514111 -103681321 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 1 1298 333 0 0 0 chr1 93514215 93514252 -103681180 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 1298 649 228 0 52 chr1 93514252 93514386 -103681046 - B3 SINE B2 -88 128 2 1 1298 384 59 0 0 chr1 93514396 93514447 -103680985 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1298 890 154 0 20 chr1 93514448 93514594 -103680838 - B1_Mur3 SINE Alu -5 144 2 2 1298 205 189 0 0 chr1 93515312 93515349 -103680083 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1298 519 274 9 0 chr1 93517570 93517683 -103677749 - RSINE1 SINE B4 -49 116 3 2 1298 255 310 104 31 chr1 93517831 93517994 -103677438 - ORR1D2 LTR MaLR -117 253 79 2 1298 8698 5 0 0 chr1 93518323 93519379 -103676053 - L1Md_T LINE L1 0 6582 5552 2 1298 333 276 209 75 chr1 93519513 93519582 -103675850 - L1MCa LINE L1 -6096 412 335 2 1298 849 299 5 0 chr1 93519582 93519796 -103675636 + B3 SINE B2 2 216 0 2 1298 333 276 209 75 chr1 93519796 93520071 -103675361 - L1MCa LINE L1 -6174 334 22 2 1298 1355 98 10 5 chr1 93520120 93520314 -103675118 + B2_Mm2 SINE B2 1 195 0 2 1298 221 333 25 0 chr1 93523184 93523265 -103672167 - B4 SINE B4 -207 85 3 2 1298 22 35 0 0 chr1 93523279 93523308 -103672124 + AT_rich Low_complexity Low_complexity 1 29 0 2 1298 267 267 105 0 chr1 93523319 93523424 -103672008 + PB1D10 SINE Alu 2 117 0 3 1298 508 305 115 32 chr1 93523565 93524252 -103671180 - L1MB3 LINE L1 0 6183 5440 3 1298 2012 113 43 3 chr1 93524295 93524598 -103670834 + Lx LINE L1 6339 6653 -1 3 1298 587 174 0 18 chr1 93524709 93524820 -103670612 - B3 SINE B2 -95 121 13 3 1298 29 28 0 0 chr1 93525286 93525322 -103670110 + AT_rich Low_complexity Low_complexity 1 36 0 3 1298 271 258 71 61 chr1 93525745 93525844 -103669588 + MTD LTR MaLR 1 100 -319 3 1298 411 21 0 0 chr1 93525852 93525900 -103669532 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1298 1090 120 5 59 chr1 93525925 93526111 -103669321 + URR1B DNA MER1_type 19 194 -31 3 1298 972 53 0 0 chr1 93528382 93528513 -103666919 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 3 1298 726 246 16 77 chr1 93528546 93528740 -103666692 - B3A SINE B2 -9 189 8 3 1298 1683 235 50 29 chr1 93530875 93531283 -103664149 + MTD LTR MaLR 1 405 -14 4 1298 384 59 0 0 chr1 93532206 93532257 -103663175 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1298 904 202 60 30 chr1 93532262 93532367 -103663065 - B4A SINE B4 -84 208 108 4 1298 387 0 0 0 chr1 93532367 93532410 -103663022 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1298 904 202 60 30 chr1 93532410 93532503 -103662929 - B4A SINE B4 -185 107 6 4 1298 554 191 51 25 chr1 93533231 93533266 -103662166 + RSINE1 SINE B4 9 41 -124 4 1298 2163 116 58 72 chr1 93533266 93533666 -103661766 + ORR1B1 LTR MaLR 1 394 0 4 1298 554 191 51 25 chr1 93533666 93533748 -103661684 + RSINE1 SINE B4 42 129 -36 4 1298 266 0 29 0 chr1 93533766 93533800 -103661632 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1298 632 102 0 10 chr1 93534239 93534338 -103661094 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 1298 538 294 161 21 chr1 93534370 93534613 -103660819 + B4A SINE B4 2 278 -14 4 1298 23 0 0 0 chr1 93534698 93534721 -103660711 + AT_rich Low_complexity Low_complexity 1 23 0 4 1298 1206 56 0 0 chr1 93534821 93534965 -103660467 + B1_Mus2 SINE Alu 2 145 -2 5 1298 1909 180 106 5 chr1 93535211 93535590 -103659842 - MTD LTR MaLR -2 417 1 5 1298 548 159 0 26 chr1 93535641 93535746 -103659686 - RMER1A Other Other 0 1030 927 5 1298 324 0 0 0 chr1 93535746 93535782 -103659650 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 5 1298 1381 165 4 40 chr1 93535836 93536113 -103659319 - RMER1B Other Other -263 803 537 5 1298 1402 204 54 6 chr1 93536081 93536397 -103659035 - RMER1B Other Other -689 377 47 5 1298 1179 69 0 7 chr1 93536511 93536657 -103658775 + B1_Mm SINE Alu 3 147 0 5 1298 762 69 0 0 chr1 93536671 93536772 -103658660 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 5 1298 978 54 0 0 chr1 93536824 93536953 -103658479 + (TCCC)n Simple_repeat Simple_repeat 1 129 0 5 1298 924 272 138 33 chr1 93537412 93537891 -103657541 - L1M2 LINE L1 -1102 5041 4513 5 1298 440 301 19 0 chr1 93537966 93538069 -103657363 - RSINE1 SINE B4 -3 162 58 5 1298 269 172 45 11 chr1 93538182 93538270 -103657162 + CT-rich Low_complexity Low_complexity 1 91 0 5 1298 270 310 76 45 chr1 93538350 93538482 -103656950 + MLT1A1 LTR MaLR 256 391 -17 6 1298 251 54 0 26 chr1 93538483 93538521 -103656911 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1298 248 231 151 19 chr1 93538534 93538640 -103656792 + MER53 DNA hAT 1 120 -73 6 1298 703 121 3 48 chr1 93538873 93539166 -103656266 + (TG)n Simple_repeat Simple_repeat 1 279 0 6 1298 26 50 0 0 chr1 93539363 93539403 -103656029 + AT_rich Low_complexity Low_complexity 1 40 0 6 1298 261 0 0 0 chr1 93539814 93539843 -103655589 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1298 484 316 147 34 chr1 93541557 93542025 -103653407 - L1M5 LINE L1 -2897 3249 2729 6 1298 22 35 0 0 chr1 93542174 93542203 -103653229 + AT_rich Low_complexity Low_complexity 1 29 0 6 1298 313 322 59 53 chr1 93543427 93543614 -103651818 - MER89 LTR ERV1 -158 401 214 6 1298 10517 122 48 57 chr1 93543951 93545388 -103650044 + L1_Mur2 LINE L1 3778 5234 -643 6 1298 432 0 0 0 chr1 93545388 93545436 -103649996 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1298 10517 122 48 57 chr1 93545436 93545939 -103649493 + L1_Mur2 LINE L1 5235 5702 -175 6 1298 279 0 0 0 chr1 93545939 93545970 -103649462 + (CAA)n Simple_repeat Simple_repeat 3 33 0 7 1298 10517 122 48 57 chr1 93545970 93546093 -103649339 + L1_Mur2 LINE L1 5703 5823 -54 6 1298 3257 142 61 24 chr1 93546094 93546670 -103648762 + Lx4B LINE L1 6457 7053 -5 7 1298 735 180 0 0 chr1 93547203 93547325 -103648107 + B1_Mus1 SINE Alu 25 146 -2 7 1298 308 223 57 142 chr1 93547205 93547346 -103648086 + B4A SINE B4 111 239 -53 7 1298 217 236 59 119 chr1 93547514 93547615 -103647817 - RSINE1 SINE B4 0 165 71 7 1298 623 293 63 42 chr1 93547816 93548101 -103647331 - Lx8 LINE L1 -268 7205 6915 7 1298 317 218 718 7 chr1 93548101 93548236 -103647196 - B4A SINE B4 -56 236 6 7 1298 491 301 192 17 chr1 93548353 93548640 -103646792 + MLT2B2 LTR ERVL 4 340 -175 7 1298 254 269 51 23 chr1 93551149 93551324 -103644108 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1298 22 0 0 0 chr1 93555799 93555821 -103639611 + GC_rich Low_complexity Low_complexity 1 22 0 8 1298 516 289 0 20 chr1 93556655 93556807 -103638625 - B1F SINE Alu 0 149 1 8 1298 695 237 14 0 chr1 93557206 93557345 -103638087 - RSINE1 SINE B4 -22 143 3 8 1298 984 241 14 10 chr1 93557371 93557580 -103637852 - B3 SINE B2 -5 211 2 8 1298 450 53 0 0 chr1 93558950 93559007 -103636425 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1298 329 175 0 16 chr1 93559050 93559114 -103636318 + ORR1C1 LTR MaLR 1 63 -315 8 1298 406 122 49 0 chr1 93559123 93559205 -103636227 + (CATA)n Simple_repeat Simple_repeat 1 86 0 8 1298 903 140 6 16 chr1 93559217 93559399 -103636033 + (CATA)n Simple_repeat Simple_repeat 1 180 0 8 1298 265 267 40 0 chr1 93559825 93559900 -103635532 - ORR1D1 LTR MaLR -9 365 288 8 1298 663 312 67 21 chr1 93559921 93560160 -103635272 + MER2 DNA MER2_type 9 258 -87 8 1298 202 180 33 0 chr1 93560261 93560322 -103635110 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1298 189 0 0 0 chr1 93560354 93560375 -103635057 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1298 369 0 0 0 chr1 93561370 93561411 -103634021 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1298 8704 20 0 0 chr1 93561814 93563353 -103632079 - L1Md_A LINE L1 -1 6581 5043 9 1298 234 0 0 0 chr1 93563771 93563797 -103631635 + (CCA)n Simple_repeat Simple_repeat 3 28 0 9 1298 981 274 38 88 chr1 93563800 93564149 -103631283 - MTD LTR MaLR -13 406 96 9 1298 213 39 0 0 chr1 93564149 93564175 -103631257 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1298 981 278 47 99 chr1 93564175 93564261 -103631171 - MTD LTR MaLR -324 95 5 9 1298 275 211 0 0 chr1 93565375 93565425 -103630007 - RSINE1 SINE B4 -2 163 114 9 1298 872 198 83 6 chr1 93565425 93565593 -103629839 + URR1B DNA MER1_type 1 181 -44 9 1298 357 231 55 0 chr1 93566141 93566232 -103629200 + ID_B1 SINE B4 2 97 -127 9 1298 1335 213 43 142 chr1 93567106 93567543 -103627889 + MTC LTR MaLR 1 394 -27 9 1298 1257 28 0 0 chr1 93568120 93568261 -103627171 + B1_Mm SINE Alu 1 141 -6 9 1298 284 308 26 0 chr1 93568491 93568569 -103626863 - RSINE1 SINE B4 -41 124 45 9 1298 459 92 0 0 chr1 93569204 93569269 -103626163 + (TGGA)n Simple_repeat Simple_repeat 3 67 0 1 1298 710 224 39 0 chr1 93569529 93569685 -103625747 - RSINE1 SINE B4 0 165 4 1 1298 1375 268 89 40 chr1 93570878 93571349 -103624083 + MER44B DNA MER2_type 29 522 -28 1 1298 423 56 0 0 chr1 93571437 93571491 -103623941 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1298 228 130 0 0 chr1 93571544 93571590 -103623842 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1298 457 261 101 0 chr1 93571604 93571723 -103623709 + B1_Mur1 SINE Alu 12 142 -7 1 1298 674 268 19 76 chr1 93571745 93571955 -103623477 - B3A SINE B2 0 198 1 1 1298 865 80 32 0 chr1 93571958 93572083 -103623349 + URR1B DNA MER1_type 97 225 0 1 1298 413 260 47 20 chr1 93572083 93572107 -103623325 - CYRA11_Mm Unknown Y-chromosome -317 300 148 1 1298 458 232 71 16 chr1 93572636 93572763 -103622669 + B1F SINE Alu 1 134 -15 1 1298 300 228 11 102 chr1 93572787 93572809 -103622623 + ID SINE ID 1 50 -174 1 1298 312 146 18 0 chr1 93572809 93572864 -103622568 + tRNA-Ala-GCY_ tRNA tRNA 7 62 -13 1 1298 275 238 11 81 chr1 93572810 93572897 -103622535 + BC1_Mm scRNA scRNA 14 94 -58 1 1298 300 228 11 102 chr1 93572864 93572875 -103622557 + ID SINE ID 51 80 -144 1 1298 457 160 9 45 chr1 93573097 93573208 -103622224 - Lx4B LINE L1 -4 7054 6948 1 1298 332 305 0 0 chr1 93573415 93573497 -103621935 + ID4 SINE ID 1 82 -1 1 1298 251 211 70 0 chr1 93573506 93573563 -103621869 - L1MC4 LINE L1 -388 7654 7594 1 1298 225 348 0 35 chr1 93573719 93573835 -103621597 - L1MD LINE L1 -2156 3990 3879 1 1298 288 0 0 0 chr1 93574080 93574112 -103621320 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1298 438 73 61 0 chr1 93574192 93574274 -103621158 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 1298 468 238 130 38 chr1 93574279 93574410 -103621022 - RSINE1 SINE B4 -20 145 3 1 1298 828 319 135 60 chr1 93574717 93575370 -103620062 - L1MEg LINE L1 -2974 3172 2471 1 1298 234 338 18 54 chr1 93575398 93575564 -103619868 - L1MEg LINE L1 -3756 2410 2251 1 1298 744 193 0 43 chr1 93576323 93576464 -103618968 + B1_Mus1 SINE Alu 12 146 -2 1 1298 1165 158 39 61 chr1 93576810 93577039 -103618393 + URR1A DNA MER1_type 3 226 0 1 1298 192 305 72 21 chr1 93577347 93577444 -103617988 + MER5B DNA MER1_type 54 155 -23 1 1298 352 342 42 106 chr1 93577802 93577822 -103617610 - L1MEg LINE L1 -5111 1131 1116 1 1298 210 37 0 0 chr1 93577822 93577849 -103617583 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1298 352 342 42 106 chr1 93577849 93577862 -103617570 - L1MEg LINE L1 -5127 1115 1104 1 1298 2099 95 0 13 chr1 93577862 93578171 -103617261 + L1Md_F2 LINE L1 6276 6580 -2 1 1298 352 342 42 106 chr1 93578171 93578447 -103616985 - L1MEg LINE L1 -5139 1103 841 1 1298 234 0 0 0 chr1 93578646 93578672 -103616760 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1 1298 4340 43 4 8 chr1 93578673 93579187 -103616245 + LTRIS3 LTR ERV1 1 512 0 1 1298 180 77 0 0 chr1 93579188 93579214 -103616218 + (TAG)n Simple_repeat Simple_repeat 1 26 0 1 1298 847 203 30 54 chr1 93579228 93579431 -103616001 - B3A SINE B2 0 198 1 1 1298 3399 46 0 128 chr1 93579452 93579952 -103615480 + RLTR10C LTR ERVK 1 436 0 1 1298 521 218 4 0 chr1 93581073 93581178 -103614254 - B1_Mur3 SINE Alu -1 119 13 1 1298 424 227 35 52 chr1 93581204 93581320 -103614112 + MER20 DNA MER1_type 98 211 -8 1 1298 303 320 96 83 chr1 93583157 93583375 -103612057 - MTEa LTR MaLR -155 224 4 1 1298 2454 109 3 6 chr1 93583411 93583770 -103611662 + RLTR15 LTR ERVK 1 358 -1 1 1298 1277 254 106 3 chr1 93583790 93584110 -103611322 - ORR1D2 LTR MaLR -17 353 1 1 1298 814 228 37 0 chr1 93584159 93584321 -103611111 - B3A SINE B2 -26 172 5 1 1298 432 326 35 62 chr1 93584403 93584567 -103610865 - L1MC4a LINE L1 -2031 5851 5680 1 1298 3292 68 0 25 chr1 93584567 93585007 -103610425 - L1Md_F2 LINE L1 -6 6576 6148 1 1298 432 326 35 62 chr1 93585007 93585130 -103610302 - L1MC4a LINE L1 -2203 5679 5572 1 1299 249 33 0 0 chr1 93586647 93586677 -103608755 + (TGG)n Simple_repeat Simple_repeat 1 30 0 1 1299 255 31 0 0 chr1 93586678 93586710 -103608722 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1299 221 325 0 0 chr1 93586781 93586858 -103608574 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1299 950 275 57 35 chr1 93586860 93587143 -103608289 - B4 SINE B4 0 292 4 1 1299 2513 83 6 0 chr1 93587388 93587712 -103607720 + ORR1A2 LTR MaLR 2 327 0 1 1299 2275 161 27 3 chr1 93588377 93588750 -103606682 - ORR1C2 LTR MaLR 0 384 3 1 1299 215 322 0 0 chr1 93590880 93590939 -103604493 + G-rich Low_complexity Low_complexity 4 62 0 1 1299 25 31 0 0 chr1 93591276 93591308 -103604124 + AT_rich Low_complexity Low_complexity 1 32 0 1 1299 978 159 112 19 chr1 93593171 93593376 -103602056 - URR1A DNA MER1_type -2 224 1 1 1299 581 270 29 25 chr1 93593407 93593605 -103601827 + B3A SINE B2 2 204 -12 1 1299 647 238 72 190 chr1 93595046 93595409 -103600023 + RMER20B LTR ERVK 257 576 -51 1 1299 696 251 58 40 chr1 93600278 93600452 -103594980 + B3 SINE B2 39 215 -1 1 1299 353 305 94 31 chr1 93600601 93600760 -103594672 - L1MEg LINE L1 -2930 3216 3048 1 1299 1303 134 55 21 chr1 93601352 93601588 -103593844 + MTD LTR MaLR 18 261 -158 1 1299 31 26 0 0 chr1 93601753 93601791 -103593641 + AT_rich Low_complexity Low_complexity 1 38 0 1 1299 186 43 0 0 chr1 93601914 93601937 -103593495 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1 1299 448 274 0 54 chr1 93601937 93602049 -103593383 - PB1D10 SINE Alu -11 106 1 1 1299 1529 241 38 22 chr1 93602068 93602437 -103592995 - MTEa LTR MaLR 0 379 5 1 1299 267 133 0 0 chr1 93602465 93602510 -103592922 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1 1299 555 69 0 0 chr1 93602584 93602656 -103592776 - ORR1B1 LTR MaLR 0 394 323 1 1299 333 208 0 0 chr1 93602669 93602741 -103592691 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1299 3470 112 33 2 chr1 93602741 93603250 -103592182 + MT2B LTR ERVL 69 593 -8 1 1299 412 123 26 40 chr1 93603270 93603346 -103592086 + MT2B LTR ERVL 521 595 -6 1 1299 222 91 0 0 chr1 93603347 93603380 -103592052 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1 1299 469 66 0 0 chr1 93603380 93603441 -103591991 - MT2B2 LTR ERVL -58 526 466 1 1299 270 285 140 81 chr1 93603638 93603959 -103591473 - L1MEg LINE L1 -5146 1096 757 1 1299 1608 138 11 84 chr1 93604263 93604610 -103590822 - RLTRETN_Mm LTR ERVK 0 322 1 1 1299 292 290 56 0 chr1 93604834 93604941 -103590491 - L1MEg LINE L1 -5971 271 159 1 1299 22 0 0 0 chr1 93605696 93605718 -103589714 + AT_rich Low_complexity Low_complexity 1 22 0 1 1299 506 175 9 0 chr1 93607002 93607116 -103588316 + GA-rich Low_complexity Low_complexity 2 116 0 1 1299 21 36 0 0 chr1 93607791 93607819 -103587613 + AT_rich Low_complexity Low_complexity 1 28 0 1 1299 544 260 56 43 chr1 93607836 93607997 -103587435 - RSINE1 SINE B4 0 165 3 1 1299 257 287 0 7 chr1 93608390 93608527 -103586905 + (TATATG)n Simple_repeat Simple_repeat 5 140 0 1 1299 316 327 143 53 chr1 93610135 93610607 -103584825 - L1M5 LINE L1 -3196 2950 2437 1 1299 728 261 68 103 chr1 93610986 93611353 -103584079 + ORR1E LTR MaLR 1 354 -5 1 1299 204 122 0 0 chr1 93611497 93611538 -103583894 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1299 336 24 0 0 chr1 93612809 93612850 -103582582 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1299 214 286 22 65 chr1 93613497 93613625 -103581807 + MER5A DNA MER1_type 6 164 -25 1 1299 1884 248 40 79 chr1 93613744 93614265 -103581167 - RLTR18B LTR ERVK -4 508 8 1 1299 324 0 0 0 chr1 93614432 93614468 -103580964 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1299 903 293 43 43 chr1 93614842 93614933 -103580499 + B4 SINE B4 11 95 -197 1 1299 1962 179 67 27 chr1 93614933 93615336 -103580096 - MTD LTR MaLR 0 419 1 1 1299 903 293 43 43 chr1 93615336 93615526 -103579906 + B4 SINE B4 96 292 0 1 1299 1083 98 0 0 chr1 93615532 93615820 -103579612 + (CA)n Simple_repeat Simple_repeat 1 288 0 1 1299 592 279 64 46 chr1 93615820 93616102 -103579330 - L1MC LINE L1 -3217 2929 2643 1 1299 373 250 122 0 chr1 93616244 93616392 -103579040 - L1M4 LINE L1 -487 5691 5526 1 1299 300 53 0 0 chr1 93616447 93616485 -103578947 + MTC LTR MaLR 1 38 -381 1 1299 494 141 0 0 chr1 93616505 93616583 -103578849 + URR1A DNA MER1_type 59 136 -90 1 1299 1026 101 0 0 chr1 93616583 93616803 -103578629 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1299 483 143 24 12 chr1 93616810 93616895 -103578537 + URR1A DNA MER1_type 140 225 -1 1 1299 1975 176 83 3 chr1 93616895 93617255 -103578177 + MTC LTR MaLR 33 421 0 1 1299 233 172 75 45 chr1 93618182 93618249 -103577183 + RMER10A LTR ERVL 124 192 -250 1 1299 601 186 0 0 chr1 93618249 93618351 -103577081 - Lx6 LINE L1 -1153 6307 6206 1 1299 599 240 129 67 chr1 93618351 93618818 -103576614 - MT2A LTR ERVL 0 493 1 1 1299 546 200 17 0 chr1 93618818 93618933 -103576499 - Lx7 LINE L1 -1474 6222 6106 1 1299 1240 48 0 0 chr1 93618940 93619086 -103576346 - B1_Mm SINE Alu 0 147 2 1 1299 13833 206 40 105 chr1 93619142 93621248 -103574184 - Lx6 LINE L1 -1543 5917 3843 1 1299 420 268 143 7 chr1 93621248 93621402 -103574030 - RLTR18B LTR ERVK -161 351 177 1 1299 13833 206 40 105 chr1 93621402 93621590 -103573842 - Lx6 LINE L1 -3618 3842 3658 1 1299 723 244 37 12 chr1 93621590 93621752 -103573680 - RLTR18B LTR ERVK -329 183 18 1 1299 13833 206 40 105 chr1 93621752 93622322 -103573110 - Lx6 LINE L1 -1543 3657 3094 1 1299 216 0 0 0 chr1 93622322 93622346 -103573086 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1299 13833 210 43 115 chr1 93622346 93623398 -103572034 - Lx6 LINE L1 -2784 3093 2048 1 1299 432 37 0 0 chr1 93623398 93623452 -103571980 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1299 13833 210 43 115 chr1 93623452 93623499 -103571933 - Lx6 LINE L1 -3830 2047 2016 1 1299 198 0 0 0 chr1 93623499 93623521 -103571911 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1299 1195 43 0 0 chr1 93623521 93623660 -103571772 - B1_Mm SINE Alu -8 139 1 1 1299 13833 170 60 52 chr1 93623660 93625297 -103570135 - Lx6 LINE L1 -3862 2015 294 1 1299 216 282 5 70 chr1 93626661 93626848 -103568584 + CT-rich Low_complexity Low_complexity 1 175 0 1 1299 251 328 0 34 chr1 93626789 93626966 -103568466 + C-rich Low_complexity Low_complexity 5 175 0 1 1299 485 320 0 17 chr1 93628595 93628834 -103566598 + (CATA)n Simple_repeat Simple_repeat 1 235 0 1 1299 278 358 96 6 chr1 93629165 93629331 -103566101 - MIRb SINE MIR -77 191 11 1 1299 1653 167 105 33 chr1 93630230 93630564 -103564868 + RLTR15 LTR ERVK 2 359 0 1 1299 427 242 66 36 chr1 93630632 93630769 -103564663 + B1F2 SINE Alu 1 141 -8 2 1299 272 235 42 42 chr1 93630782 93630853 -103564579 + ID4_ SINE ID 1 71 -12 2 1299 1293 61 0 0 chr1 93630886 93631066 -103564366 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1299 213 210 0 0 chr1 93631126 93631188 -103564244 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1299 2391 141 74 5 chr1 93631274 93631667 -103563765 + MTC LTR MaLR 2 421 0 2 1299 558 0 0 0 chr1 93632040 93632102 -103563330 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1299 7822 68 12 2 chr1 93632704 93633900 -103561532 - L1_Mus3 LINE L1 0 6638 5432 2 1299 967 183 113 0 chr1 93634153 93634339 -103561093 + B3 SINE B2 10 216 0 2 1299 318 270 35 5 chr1 93636898 93636999 -103558433 - MLT1A1 LTR MaLR -64 344 238 2 1299 988 300 86 30 chr1 93637432 93637896 -103557536 - Lx8 LINE L1 -179 7294 6805 2 1299 463 258 49 54 chr1 93637895 93638100 -103557332 - Lx8 LINE L1 -5 7468 7265 2 1299 224 232 165 21 chr1 93638102 93638199 -103557233 - L2 LINE L2 -531 2888 2778 2 1299 1130 181 62 5 chr1 93638415 93638626 -103556806 - URR1B DNA MER1_type -1 224 2 2 1299 962 45 0 29 chr1 93640975 93641112 -103554320 + (TCTCCC)n Simple_repeat Simple_repeat 2 134 0 2 1299 1102 229 92 44 chr1 93641695 93641988 -103553444 - ORR1D1 LTR MaLR -65 309 3 2 1299 213 175 0 24 chr1 93642535 93642576 -103552856 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1299 306 316 98 0 chr1 93642576 93642709 -103552723 - L1MEc LINE L1 -4316 2084 1939 2 1299 803 249 67 6 chr1 93643772 93643852 -103551580 + ID_B1 SINE B4 2 92 -132 2 1299 302 345 63 9 chr1 93643852 93643963 -103551469 + PB1D10 SINE Alu 1 117 0 2 1299 848 135 0 7 chr1 93643972 93644121 -103551311 + (GAAA)n Simple_repeat Simple_repeat 3 150 0 2 1299 202 310 115 49 chr1 93645753 93645875 -103549557 - L2 LINE L2 -755 2664 2535 2 1299 279 0 0 0 chr1 93647620 93647651 -103547781 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1299 243 152 0 0 chr1 93647651 93647697 -103547735 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1299 744 312 38 45 chr1 93647723 93648015 -103547417 - B4A SINE B4 -1 291 2 2 1299 242 216 133 10 chr1 93648573 93648671 -103546761 - L1MEc LINE L1 -4557 1843 1734 2 1299 1311 27 0 0 chr1 93648752 93648900 -103546532 + B1_Mus1 SINE Alu 1 148 0 2 1299 244 246 150 17 chr1 93648911 93649031 -103546401 - L1MEc LINE L1 -4745 1670 1535 2 1299 1137 73 0 0 chr1 93649192 93649357 -103546075 + (TC)n Simple_repeat Simple_repeat 1 165 0 2 1299 1024 303 180 20 chr1 93649359 93650417 -103545015 - L1MEc LINE L1 -5127 1273 47 2 1299 186 337 91 23 chr1 93650461 93650549 -103544883 + L2b LINE L2 3281 3374 -1 2 1299 283 220 0 48 chr1 93652121 93652183 -103543249 - MIR SINE MIR -79 129 71 2 1299 272 249 169 80 chr1 93652389 93652409 -103543023 - L1MB3 LINE L1 -4 6179 6160 2 1299 246 32 0 0 chr1 93652409 93652440 -103542992 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1299 272 249 169 80 chr1 93652440 93652620 -103542812 - L1MB3 LINE L1 -24 6159 5962 2 1299 385 277 31 19 chr1 93652684 93652816 -103542616 - B1F1 SINE Alu 0 149 5 2 1299 21 36 0 0 chr1 93654468 93654496 -103540936 + AT_rich Low_complexity Low_complexity 1 28 0 2 1299 324 0 0 0 chr1 93654990 93655026 -103540406 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1299 306 326 11 0 chr1 93656316 93656411 -103539021 + L1MEg LINE L1 1857 1952 -4132 2 1299 911 151 7 7 chr1 93657894 93658041 -103537391 + B1_Mus1 SINE Alu 2 148 0 2 1299 789 184 0 0 chr1 93658042 93658200 -103537232 + GA-rich Low_complexity Low_complexity 1 158 0 2 1299 236 196 22 0 chr1 93658853 93658899 -103536533 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1299 189 0 0 0 chr1 93659836 93659857 -103535575 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1299 678 165 0 0 chr1 93660100 93660227 -103535205 + (TG)n Simple_repeat Simple_repeat 1 127 0 2 1299 399 242 298 8 chr1 93660227 93660348 -103535084 - RSINE1 SINE B4 0 165 10 2 1299 258 279 44 0 chr1 93660668 93660736 -103534696 + ID4 SINE ID 12 82 -1 2 1299 594 311 67 30 chr1 93661044 93661312 -103534120 + MER44A DNA MER2_type 36 313 -26 2 1299 2241 70 77 42 chr1 93661555 93661672 -103533760 + ORR1A2 LTR MaLR 4 126 -201 2 1299 1271 48 0 0 chr1 93661672 93661819 -103533613 - B1_Mm SINE Alu 0 147 1 2 1299 2241 70 77 42 chr1 93661819 93662014 -103533418 + ORR1A2 LTR MaLR 127 327 0 2 1299 517 284 65 5 chr1 93662081 93662265 -103533167 + L1MA4 LINE L1 5707 5901 -399 2 1299 923 274 46 35 chr1 93662603 93663038 -103532394 - L1M3 LINE L1 -1683 4457 4018 2 1299 736 303 32 52 chr1 93663206 93663516 -103531916 + MER44B DNA MER2_type 147 450 -100 2 1299 200 172 17 0 chr1 93663518 93663576 -103531856 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1299 290 233 0 16 chr1 93663576 93663637 -103531795 - RSINE1 SINE B4 0 165 106 2 1299 746 209 13 25 chr1 93663931 93664088 -103531344 + B3 SINE B2 1 155 -61 2 1299 504 284 78 50 chr1 93664139 93664340 -103531092 - MLT1A1 LTR MaLR -2 406 166 2 1299 247 317 56 47 chr1 93664348 93664580 -103530852 + L1MEd LINE L1 971 1204 -4915 2 1299 1370 83 0 35 chr1 93664975 93665175 -103530257 + B2_Mm2 SINE B2 1 193 -2 2 1299 543 146 56 0 chr1 93665179 93665268 -103530164 + PB1D7 SINE Alu 1 94 -26 2 1299 1330 217 112 18 chr1 93665314 93665652 -103529780 - ORR1D2 LTR MaLR 0 370 1 2 1299 252 152 30 15 chr1 93665669 93665736 -103529696 + GA-rich Low_complexity Low_complexity 6 73 0 2 1299 556 216 94 8 chr1 93666400 93666517 -103528915 - B4A SINE B4 -165 127 1 2 1299 1032 136 167 5 chr1 93669738 93669930 -103525502 + URR1B DNA MER1_type 1 223 -2 2 1299 473 302 68 58 chr1 93669971 93670161 -103525271 - B2_Mm2 SINE B2 -1 194 3 2 1299 224 269 23 114 chr1 93670083 93670171 -103525261 - B4A SINE B4 -211 81 2 2 1299 234 276 133 55 chr1 93670413 93670578 -103524854 - L1ME3A LINE L1 -130 6043 5866 2 1299 242 305 49 97 chr1 93670668 93670853 -103524579 - MLT2B5 LTR ERVL -82 473 298 2 1299 1209 224 98 18 chr1 93670716 93670993 -103524439 - MTE2b LTR MaLR -76 303 5 2 1299 342 0 0 0 chr1 93671025 93671063 -103524369 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1299 881 222 107 10 chr1 93671081 93671277 -103524155 + B3 SINE B2 1 215 -1 2 1299 510 244 281 22 chr1 93671487 93671754 -103523678 - MLT1E1 LTR MaLR -46 634 269 2 1299 429 54 0 0 chr1 93672212 93672268 -103523164 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1299 1022 241 90 0 chr1 93672268 93672513 -103522919 - B4 SINE B4 -18 274 8 2 1299 354 292 58 0 chr1 93672538 93672675 -103522757 - L1MDa LINE L1 -4954 1679 1535 2 1299 359 275 55 0 chr1 93672952 93673043 -103522389 - B1_Mur2 SINE Alu -3 146 51 2 1299 474 234 21 117 chr1 93673504 93673649 -103521783 - B4 SINE B4 0 292 162 2 1299 1366 95 0 0 chr1 93673800 93673989 -103521443 - L1Md_F2 LINE L1 -331 6251 6063 2 1299 2692 59 15 6 chr1 93673989 93674331 -103521101 + L1_Mus1 LINE L1 6223 6567 0 2 1299 1954 122 90 18 chr1 93675514 93675849 -103519583 - RLTR15 LTR ERVK 0 359 1 2 1299 391 252 197 7 chr1 93675851 93676003 -103519429 - B3A SINE B2 -16 182 2 2 1299 425 255 82 82 chr1 93678931 93679089 -103516343 - HAL1 LINE L1 -1343 1164 1007 2 1299 744 206 174 0 chr1 93679434 93679618 -103515814 + B3 SINE B2 1 216 0 2 1299 251 240 31 20 chr1 93679805 93679903 -103515529 - Tigger7 DNA MER2_type -101 2390 2292 2 1299 252 306 104 35 chr1 93679885 93680000 -103515432 - Tigger7 DNA MER2_type -2368 123 1 2 1299 366 350 26 0 chr1 93680363 93680480 -103514952 - PB1D9 SINE Alu 0 120 1 2 1299 360 64 0 0 chr1 93681033 93681080 -103514352 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1299 423 0 0 0 chr1 93681080 93681126 -103514306 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1299 225 255 0 0 chr1 93681354 93681401 -103514031 - MIR SINE MIR -1 261 215 2 1299 1461 214 102 20 chr1 93681420 93681763 -103513669 - MTEb LTR MaLR -1 378 8 2 1299 232 158 0 0 chr1 93683079 93683117 -103512315 - MLT1D LTR MaLR -398 107 70 2 1299 405 0 0 0 chr1 93683567 93683612 -103511820 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1299 189 0 0 0 chr1 93683612 93683632 -103511800 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1299 2727 64 64 39 chr1 93684649 93685039 -103510393 + MTB LTR MaLR 1 400 0 2 1299 1084 187 64 238 chr1 93685228 93685678 -103509754 - ORR1C2 LTR MaLR -12 372 1 2 1299 418 248 97 9 chr1 93685686 93685800 -103509632 - MTEb LTR MaLR -9 370 247 2 1299 219 204 0 0 chr1 93686575 93686624 -103508808 + G-rich Low_complexity Low_complexity 1 49 0 2 1299 336 224 108 39 chr1 93686626 93686756 -103508676 + L1MEg LINE L1 1027 1165 -4919 2 1299 180 111 0 0 chr1 93686909 93686936 -103508496 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2 1299 723 293 93 27 chr1 93687136 93687543 -103507889 - L1MB5 LINE L1 -185 5989 5556 2 1299 743 155 0 0 chr1 93687770 93687886 -103507546 + ORR1A4 LTR MaLR 212 327 -2 2 1299 1147 209 169 18 chr1 93688106 93688266 -103507166 + ORR1C2 LTR MaLR 1 183 -201 2 1299 447 35 0 0 chr1 93688266 93688323 -103507109 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 2 1299 213 39 0 0 chr1 93688325 93688351 -103507081 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1299 1147 209 169 18 chr1 93688351 93688518 -103506914 + ORR1C2 LTR MaLR 184 377 -7 2 1299 218 197 14 70 chr1 93688705 93688776 -103506656 + CT-rich Low_complexity Low_complexity 2 68 0 2 1299 465 19 0 0 chr1 93689119 93689173 -103506259 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1299 360 313 97 68 chr1 93689278 93689484 -103505948 - B4 SINE B4 -1 291 80 2 1299 294 29 0 0 chr1 93689917 93689952 -103505480 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1299 557 186 20 0 chr1 93689966 93690068 -103505364 + RSINE1 SINE B4 8 111 -54 3 1299 298 340 7 7 chr1 93690170 93690324 -103505108 + (CA)n Simple_repeat Simple_repeat 2 155 0 3 1299 215 402 6 6 chr1 93691287 93691452 -103503980 + (CA)n Simple_repeat Simple_repeat 1 165 0 3 1299 337 367 36 31 chr1 93691840 93692034 -103503398 + MLT1K LTR MaLR 393 587 -8 3 1299 180 111 0 0 chr1 93692166 93692193 -103503239 + (CAG)n Simple_repeat Simple_repeat 3 29 0 3 1299 2223 150 17 11 chr1 93692685 93693042 -103502390 - ORR1B2 LTR MaLR -8 359 1 3 1299 713 280 137 48 chr1 93693412 93693718 -103501714 - MTEa LTR MaLR 0 379 16 3 1299 396 262 65 84 chr1 93693763 93693917 -103501515 + HAL1-3A_ME LINE L1 2285 2435 -423 3 1299 217 83 61 20 chr1 93694602 93694651 -103500781 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1299 22 0 0 0 chr1 93695112 93695134 -103500298 + AT_rich Low_complexity Low_complexity 1 22 0 3 1299 950 194 21 75 chr1 93695751 93695990 -103499442 + URR1A DNA MER1_type 1 226 0 3 1299 39 0 0 0 chr1 93697898 93697937 -103497495 + GC_rich Low_complexity Low_complexity 1 39 0 3 1299 23 54 0 0 chr1 93698166 93698203 -103497229 + GC_rich Low_complexity Low_complexity 1 37 0 3 1299 230 116 0 23 chr1 93699959 93700003 -103495429 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 1299 1400 0 13 34 chr1 93701391 93701631 -103493801 + (TTTCC)n Simple_repeat Simple_repeat 1 234 0 3 1299 394 88 29 0 chr1 93702606 93702674 -103492758 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1299 195 114 0 0 chr1 93703387 93703422 -103492010 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1299 1232 160 4 70 chr1 93704482 93704670 -103490762 - B3 SINE B2 0 216 42 3 1299 1338 81 17 0 chr1 93704670 93704843 -103490589 - B2_Mm2 SINE B2 -19 176 1 3 1299 1232 160 4 70 chr1 93704843 93704882 -103490550 - B3 SINE B2 -175 41 4 3 1299 258 56 0 0 chr1 93705461 93705497 -103489935 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1299 207 0 0 0 chr1 93706066 93706089 -103489343 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1299 1178 132 67 29 chr1 93706845 93707055 -103488377 + URR1A DNA MER1_type 9 226 0 3 1299 252 136 31 9 chr1 93708314 93708369 -103487063 + MIR SINE MIR 110 168 -100 3 1299 249 139 0 0 chr1 93708467 93708510 -103486922 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1299 399 324 87 44 chr1 93708668 93708920 -103486512 + L1MB5 LINE L1 5898 6160 -14 3 1299 311 145 14 0 chr1 93709537 93709606 -103485826 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1299 324 0 0 0 chr1 93709620 93709656 -103485776 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 3 1299 468 297 0 33 chr1 93709668 93709790 -103485642 - RSINE1 SINE B4 -12 153 36 3 1299 549 162 219 17 chr1 93711613 93711754 -103483678 + URR1B DNA MER1_type 6 150 -75 3 1299 3248 66 2 2 chr1 93713951 93714362 -103481070 + L1_Mus2 LINE L1 6155 6565 -1 3 1299 22 0 0 0 chr1 93714365 93714387 -103481045 + AT_rich Low_complexity Low_complexity 1 22 0 3 1299 206 248 149 31 chr1 93714550 93714687 -103480745 - MIRb SINE MIR -66 202 33 3 1299 1468 217 55 26 chr1 93715141 93715486 -103479946 - MTEa LTR MaLR -13 366 12 3 1300 269 299 162 52 chr1 93717542 93717715 -103477717 + B4A SINE B4 66 257 -35 3 1300 414 100 0 0 chr1 93717716 93717776 -103477656 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1300 337 298 140 0 chr1 93717779 93717957 -103477475 + L1M2 LINE L1 5254 5456 -844 3 1300 343 252 86 0 chr1 93718140 93718279 -103477153 - L1MB2 LINE L1 -289 5882 5732 3 1300 593 256 153 47 chr1 93718977 93719350 -103476082 - L1MB3 LINE L1 -2 6181 5769 3 1300 663 13 0 0 chr1 93720545 93720621 -103474811 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 3 1300 604 280 122 23 chr1 93720755 93721018 -103474414 + B4A SINE B4 1 289 -3 3 1300 385 216 0 0 chr1 93721071 93721145 -103474287 + B1F SINE Alu 68 141 -8 3 1300 850 256 0 0 chr1 93721152 93721328 -103474104 + B3A SINE B2 19 194 -4 3 1300 366 80 0 0 chr1 93721334 93721384 -103474048 + (CATA)n Simple_repeat Simple_repeat 3 52 0 3 1300 1033 186 63 126 chr1 93722499 93722602 -103472830 + B4 SINE B4 4 94 -198 3 1300 441 0 0 0 chr1 93722602 93722651 -103472781 + (TGG)n Simple_repeat Simple_repeat 2 50 0 3 1300 1033 186 63 126 chr1 93722651 93722849 -103472583 + B4 SINE B4 95 286 -6 3 1300 261 75 0 0 chr1 93725032 93725072 -103470360 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 3 1300 333 213 16 0 chr1 93726369 93726430 -103469002 - ID4 SINE ID -19 64 3 3 1300 271 285 164 28 chr1 93729613 93729826 -103465606 + MLT1J1 LTR MaLR 74 315 -129 3 1300 421 322 0 33 chr1 93731306 93731525 -103463907 + (TATG)n Simple_repeat Simple_repeat 1 211 0 3 1300 334 264 169 42 chr1 93731584 93731750 -103463682 + MER2 DNA MER2_type 158 344 -1 3 1300 581 40 14 0 chr1 93733501 93733575 -103461857 + B1_Mus2 SINE Alu 66 140 -7 3 1300 248 70 0 23 chr1 93733578 93733622 -103461810 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1300 1380 73 0 10 chr1 93733670 93733974 -103461458 + (TCTCCC)n Simple_repeat Simple_repeat 1 300 0 3 1300 194 128 0 25 chr1 93736568 93736608 -103458824 + (CCCTG)n Simple_repeat Simple_repeat 1 39 0 3 1300 329 0 24 0 chr1 93736736 93736777 -103458655 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1300 1427 187 165 3 chr1 93737973 93738295 -103457137 - ORR1D1 LTR MaLR 0 374 1 3 1300 538 213 14 0 chr1 93738672 93738776 -103456656 + PB1D10 SINE Alu 7 122 -5 3 1300 327 202 103 56 chr1 93739250 93739356 -103456076 + B1F SINE Alu 3 108 -39 3 1300 279 0 0 0 chr1 93739752 93739783 -103455649 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 1300 189 147 0 0 chr1 93740743 93740777 -103454655 + (CATG)n Simple_repeat Simple_repeat 3 36 0 3 1300 209 297 0 15 chr1 93741080 93741145 -103454287 + GA-rich Low_complexity Low_complexity 1 64 0 3 1300 384 192 0 0 chr1 93741878 93741977 -103453455 + (TG)n Simple_repeat Simple_repeat 1 99 0 3 1300 252 174 22 72 chr1 93743023 93743203 -103452229 + (CATA)n Simple_repeat Simple_repeat 4 174 0 3 1300 477 133 37 37 chr1 93743220 93743384 -103452048 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 1300 21 36 0 0 chr1 93744280 93744308 -103451124 + AT_rich Low_complexity Low_complexity 1 28 0 3 1300 226 269 114 92 chr1 93744868 93744999 -103450433 - MTEa LTR MaLR -44 335 202 3 1300 435 38 0 0 chr1 93745978 93746031 -103449401 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1300 200 116 70 0 chr1 93746070 93746113 -103449319 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1300 198 0 0 0 chr1 93746113 93746135 -103449297 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1300 303 270 112 0 chr1 93746176 93746265 -103449167 - RSINE1 SINE B4 -64 101 3 3 1300 492 315 176 6 chr1 93746266 93746448 -103448984 - B4A SINE B4 -63 229 17 3 1300 401 313 104 45 chr1 93747952 93748260 -103447172 + MLT1M LTR MaLR 113 438 -234 3 1300 392 221 53 42 chr1 93748330 93748468 -103446964 - MLT1A1 LTR MaLR 0 408 239 3 1300 237 33 0 0 chr1 93748506 93748536 -103446896 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1300 231 333 103 41 chr1 93748860 93749054 -103446378 + LTR16E2 LTR ERVL 360 565 -3 3 1300 307 235 170 6 chr1 93749483 93749654 -103445778 + L1MD1 LINE L1 2403 2601 -4032 3 1300 504 0 0 0 chr1 93749667 93749723 -103445709 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1300 588 256 0 8 chr1 93749807 93749933 -103445499 + RSINE1 SINE B4 12 136 -29 3 1300 1375 247 181 25 chr1 93749946 93750988 -103444444 + L1MD1 LINE L1 2882 4086 -2451 3 1300 467 281 0 42 chr1 93750999 93751118 -103444314 + B3A SINE B2 7 120 -78 3 1300 486 0 0 0 chr1 93751189 93751243 -103444189 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1300 964 293 85 19 chr1 93751302 93751727 -103443705 + Lx8 LINE L1 6639 7091 -382 3 1300 2088 111 40 9 chr1 93751742 93752068 -103443364 + MTB_Mm LTR MaLR 1 336 -71 3 1300 506 309 144 53 chr1 93752264 93752903 -103442529 + L1MD1 LINE L1 5935 6631 -2 3 1300 679 199 226 6 chr1 93753004 93753181 -103442251 + B3 SINE B2 1 216 0 3 1300 238 192 77 0 chr1 93754249 93754301 -103441131 + ID4_ SINE ID 15 70 -13 3 1300 189 121 0 0 chr1 93754433 93754466 -103440966 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1300 285 273 23 0 chr1 93754506 93754634 -103440798 + (CAGAGA)n Simple_repeat Simple_repeat 6 136 0 3 1300 420 20 0 0 chr1 93754651 93754700 -103440732 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1300 536 282 36 48 chr1 93756597 93756778 -103438654 - B4A SINE B4 -9 283 44 3 1300 204 40 0 0 chr1 93756848 93756873 -103438559 + (ATAGG)n Simple_repeat Simple_repeat 1 25 0 3 1300 1434 189 107 48 chr1 93757228 93757583 -103437849 - ORR1C2 LTR MaLR -8 376 1 3 1300 200 229 21 0 chr1 93757974 93758022 -103437410 + A-rich Low_complexity Low_complexity 5 53 0 3 1300 538 218 27 18 chr1 93758469 93758581 -103436851 - PB1D10 SINE Alu -4 113 1 3 1300 503 252 37 7 chr1 93758632 93758768 -103436664 - RMER15 LTR ERVL -14 561 422 3 1300 219 25 0 70 chr1 93759017 93759060 -103436372 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 3 1300 461 276 37 7 chr1 93759267 93759402 -103436030 + RMER15 LTR ERVL 423 561 -14 3 1300 519 232 72 7 chr1 93760061 93760200 -103435232 + RMER15-int LTR ERVL 699 846 -4153 3 1300 299 250 28 0 chr1 93760621 93760693 -103434739 + RMER15-int LTR ERVL 934 1007 -3992 3 1300 1775 312 94 19 chr1 93760821 93761611 -103433821 + RMER15-int LTR ERVL 1025 1873 -3126 3 1300 332 350 96 9 chr1 93761628 93761847 -103433585 + RMER15-int LTR ERVL 1928 2165 -2834 3 1300 1005 297 89 27 chr1 93762449 93762885 -103432547 - MT2A LTR ERVL 0 601 63 3 1300 515 274 44 19 chr1 93762812 93762972 -103432460 - MTD LTR MaLR -255 164 1 3 1300 818 268 105 55 chr1 93762997 93763091 -103432341 - RCHARR1 DNA MER1_type -543 431 333 3 1300 621 66 0 0 chr1 93763091 93763182 -103432250 + (GAA)n Simple_repeat Simple_repeat 3 93 0 3 1300 818 268 105 55 chr1 93763182 93763450 -103431982 - RCHARR1 DNA MER1_type -642 332 52 3 1300 234 222 18 18 chr1 93763559 93763614 -103431818 - RCHARR1 DNA MER1_type -870 104 50 3 1300 3379 30 25 0 chr1 93763979 93764380 -103431052 + RLTR10A LTR ERVK 1 411 0 4 1300 326 161 58 25 chr1 93764976 93765097 -103430335 + CT-rich Low_complexity Low_complexity 3 127 0 4 1300 801 288 71 4 chr1 93765603 93765871 -103429561 + B4 SINE B4 1 286 -6 4 1300 258 312 0 36 chr1 93766436 93766519 -103428913 - MIRb SINE MIR -64 204 125 4 1300 271 239 0 29 chr1 93766725 93766794 -103428638 + GA-rich Low_complexity Low_complexity 1 67 0 4 1300 284 279 99 94 chr1 93767019 93767327 -103428105 + L2a LINE L2 3071 3420 -6 4 1300 204 125 0 0 chr1 93772444 93772476 -103422956 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1300 297 0 0 0 chr1 93772476 93772509 -103422923 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1300 782 300 97 14 chr1 93772509 93772861 -103422571 - L1MA4A LINE L1 -396 5907 5527 4 1300 228 67 0 0 chr1 93772948 93772978 -103422454 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 4 1300 1035 81 15 0 chr1 93772978 93773114 -103422318 + B2_Mm2 SINE B2 9 146 -49 4 1300 441 0 0 0 chr1 93773116 93773165 -103422267 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1300 342 0 0 0 chr1 93773165 93773202 -103422230 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1300 698 277 40 40 chr1 93773211 93773508 -103421924 + RLTR15 LTR ERVK 54 350 -9 4 1300 317 24 0 23 chr1 93773559 93773602 -103421830 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 4 1300 438 149 10 103 chr1 93773612 93773709 -103421723 - B1_Mur3 SINE Alu -20 129 42 4 1300 264 0 0 159 chr1 93773712 93773844 -103421588 + (CTCTG)n Simple_repeat Simple_repeat 5 115 0 4 1300 329 164 0 35 chr1 93773845 93773902 -103421530 - PB1D9 SINE Alu -61 59 5 4 1300 248 240 0 138 chr1 93773902 93773932 -103421500 - B4 SINE B4 -148 144 70 4 1300 896 317 67 45 chr1 93773979 93774550 -103420882 - L1MA4A LINE L1 -777 5366 4784 4 1300 209 195 24 0 chr1 93775368 93775409 -103420023 + CT-rich Low_complexity Low_complexity 4 45 0 4 1300 327 49 0 0 chr1 93775622 93775663 -103419769 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1300 4531 84 27 0 chr1 93776019 93776604 -103418828 - MT2B LTR ERVL 0 601 1 4 1300 243 260 54 14 chr1 93776921 93776995 -103418437 + L1MB5 LINE L1 473 549 -6355 4 1300 360 363 111 16 chr1 93777209 93777369 -103418063 + L1MB5 LINE L1 977 1152 -5752 4 1300 378 0 0 0 chr1 93777369 93777411 -103418021 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1300 360 363 111 16 chr1 93777411 93777502 -103417930 + L1MB5 LINE L1 1153 1252 -5652 4 1300 29 0 0 0 chr1 93778197 93778226 -103417206 + AT_rich Low_complexity Low_complexity 1 29 0 4 1300 989 207 85 60 chr1 93778251 93778665 -103416767 + Lx4B LINE L1 6572 6990 -10 4 1300 854 164 20 0 chr1 93778810 93778956 -103416476 + B1_Mur4 SINE Alu 2 150 0 4 1300 32 0 0 0 chr1 93778959 93778991 -103416441 + AT_rich Low_complexity Low_complexity 1 32 0 4 1300 786 311 64 45 chr1 93779403 93780069 -103415363 - L1MA8 LINE L1 -155 6145 5425 4 1300 236 292 52 0 chr1 93780068 93780164 -103415268 + L1MB5 LINE L1 1618 1718 -5616 4 1300 225 288 58 36 chr1 93780145 93780282 -103415150 + L1MB5 LINE L1 2373 2512 -4590 4 1300 9599 75 20 8 chr1 93780389 93781805 -103413627 + MusHAL1 LINE L1 652 2084 -628 4 1300 559 49 0 0 chr1 93781895 93781977 -103413455 + L1Md_F2 LINE L1 6501 6582 0 4 1300 1251 275 70 45 chr1 93782024 93782616 -103412816 + Lx7 LINE L1 6866 7472 -1 4 1300 395 235 41 25 chr1 93782624 93782746 -103412686 + L1MB5 LINE L1 5739 5862 -1144 4 1300 401 266 121 12 chr1 93782776 93782880 -103412552 + L1MB5 LINE L1 5937 6039 -967 4 1300 375 23 0 0 chr1 93782880 93782924 -103412508 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1300 401 266 121 12 chr1 93782924 93783059 -103412373 + L1MB5 LINE L1 6040 6201 -805 4 1300 351 237 37 0 chr1 93783083 93783184 -103412248 + L1MB5 LINE L1 6866 6978 -56 4 1300 1145 50 0 0 chr1 93783184 93783324 -103412108 + B1_Mus2 SINE Alu 2 141 -6 4 1300 21 0 0 0 chr1 93783772 93783793 -103411639 + AT_rich Low_complexity Low_complexity 1 21 0 4 1300 370 314 89 36 chr1 93783951 93784199 -103411233 - L1M5 LINE L1 -638 5602 5342 4 1300 286 177 39 24 chr1 93784210 93784337 -103411095 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 1300 666 104 45 13 chr1 93784353 93784509 -103410923 + (TG)n Simple_repeat Simple_repeat 1 161 0 4 1300 3098 43 8 2 chr1 93785280 93785674 -103409758 - MTA_Mm LTR MaLR 0 396 1 4 1300 304 323 60 8 chr1 93785730 93785864 -103409568 - L1M5 LINE L1 -1782 4364 4224 4 1300 2099 171 24 3 chr1 93785959 93786329 -103409103 - ORR1C1 LTR MaLR 0 378 1 4 1300 2371 150 37 2 chr1 93786366 93786773 -103408659 + MTC LTR MaLR 1 421 0 4 1300 848 183 0 0 chr1 93787607 93787749 -103407683 - B1_Mur2 SINE Alu -2 147 6 4 1300 334 323 108 60 chr1 93791071 93791255 -103404177 - ORR1E LTR MaLR -23 336 131 4 1300 2974 99 178 10 chr1 93791255 93791756 -103403676 + RMER4B LTR ERVK 1 585 0 4 1300 334 323 108 60 chr1 93791756 93791887 -103403545 - ORR1E LTR MaLR -229 130 6 4 1300 3146 176 169 39 chr1 93791940 93792732 -103402700 + RMER19B LTR ERVK 8 902 0 4 1300 763 240 191 89 chr1 93793269 93793280 -103402152 - MT2B LTR ERVL -77 456 448 4 1300 459 0 0 0 chr1 93793280 93793331 -103402101 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 4 1300 1002 224 83 80 chr1 93793331 93793680 -103401752 - MT2B LTR ERVL -75 526 59 4 1300 273 267 51 51 chr1 93793609 93793688 -103401744 - MTE2a LTR MaLR -254 125 47 4 1300 1044 155 31 31 chr1 93794464 93794690 -103400742 - RLTR15 LTR ERVK -133 226 1 4 1300 262 273 15 0 chr1 93794690 93794752 -103400680 + RSINE1 SINE B4 31 93 -72 4 1300 280 0 24 24 chr1 93795153 93795194 -103400238 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1300 2199 133 40 3 chr1 93795273 93795627 -103399805 - ORR1B2 LTR MaLR 0 367 1 4 1300 1789 153 128 24 chr1 93797282 93797656 -103397776 - MTC LTR MaLR -8 413 1 4 1300 1193 190 5 9 chr1 93799029 93799252 -103396180 - URR1A DNA MER1_type -2 224 3 4 1300 303 0 0 60 chr1 93799399 93799449 -103395983 + (TTCTC)n Simple_repeat Simple_repeat 3 49 0 4 1300 432 280 63 82 chr1 93800156 93800362 -103395070 - MamGypLTR1a LTR Gypsy -561 223 22 4 1300 1003 249 179 0 chr1 93801282 93801583 -103393849 - MTD LTR MaLR -24 395 41 4 1300 297 0 0 0 chr1 93801815 93801848 -103393584 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1300 315 71 0 0 chr1 93801848 93801890 -103393542 + (TATG)n Simple_repeat Simple_repeat 4 45 0 4 1300 295 244 70 47 chr1 93802447 93802533 -103392899 - PB1D10 SINE Alu -1 116 29 4 1300 403 241 11 0 chr1 93803125 93803212 -103392220 - B4 SINE B4 -19 273 186 4 1300 509 242 122 41 chr1 93803337 93803509 -103391923 - B4 SINE B4 -106 186 1 4 1300 345 210 160 0 chr1 93803528 93803628 -103391804 + PB1D10 SINE Alu 2 117 0 4 1300 576 309 65 99 chr1 93804952 93805540 -103389892 + Charlie7 DNA MER1_type 1730 2297 -315 4 1300 285 75 0 0 chr1 93806646 93806686 -103388746 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1300 495 217 151 44 chr1 93809934 93810093 -103385339 + B4 SINE B4 2 177 -115 4 1300 252 0 0 0 chr1 93810976 93811004 -103384428 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1300 1249 28 11 28 chr1 93811029 93811210 -103384222 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 4 1300 281 68 23 0 chr1 93811274 93811318 -103384114 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1300 191 235 58 19 chr1 93811804 93811856 -103383576 + L2c LINE L2 3263 3316 -71 4 1300 202 114 0 28 chr1 93811941 93811977 -103383455 + (TGGGGG)n Simple_repeat Simple_repeat 4 38 0 4 1300 708 87 0 28 chr1 93812121 93812228 -103383204 - B1_Mus2 SINE Alu 0 147 44 4 1300 802 65 0 0 chr1 93812223 93812330 -103383102 - B1_Mm SINE Alu -40 107 1 4 1300 291 257 0 39 chr1 93812653 93812730 -103382702 - B1_Mur1 SINE Alu -28 121 48 4 1300 205 358 12 0 chr1 93814984 93815065 -103380367 + L4 LINE RTE 1802 1883 -146 4 1300 351 0 0 0 chr1 93815894 93815933 -103379499 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1300 277 299 11 44 chr1 93820690 93820781 -103374651 - PB1D10 SINE Alu -5 112 25 4 1300 306 241 55 83 chr1 93820850 93820995 -103374437 - L1M5 LINE L1 -2278 3868 3728 4 1300 873 264 69 93 chr1 93820997 93821360 -103374072 + ORR1E LTR MaLR 1 379 0 4 1300 495 236 93 132 chr1 93821686 93821891 -103373541 - B3A SINE B2 0 198 2 4 1300 207 125 0 0 chr1 93826518 93826558 -103368874 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1300 24 0 0 0 chr1 93828670 93828694 -103366738 + AT_rich Low_complexity Low_complexity 1 24 0 4 1300 26 30 0 0 chr1 93828770 93828803 -103366629 + AT_rich Low_complexity Low_complexity 1 33 0 4 1300 225 0 0 0 chr1 93829308 93829333 -103366099 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1300 198 0 0 0 chr1 93831423 93831445 -103363987 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1300 226 276 40 0 chr1 93833478 93833554 -103361878 + L1M4c LINE L1 1560 1638 -4746 4 1300 450 0 0 0 chr1 93834661 93834711 -103360721 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1300 181 204 0 58 chr1 93834969 93835021 -103360411 + L2 LINE L2 804 852 -2567 4 1300 608 299 70 21 chr1 93836002 93836286 -103359146 + L1M4c LINE L1 3876 4173 -2206 4 1300 242 219 94 0 chr1 93836508 93836604 -103358828 - Lx5 LINE L1 0 7050 6946 4 1300 705 252 161 25 chr1 93836635 93837071 -103358361 + L1M4c LINE L1 4459 4953 -1423 4 1300 198 337 11 11 chr1 93837110 93837197 -103358235 - L2a LINE L2 0 3426 3340 4 1300 1208 165 41 8 chr1 93838927 93839171 -103356261 + RLTR28 LTR ERVL 54 305 -219 4 1300 1094 133 24 142 chr1 93841457 93841711 -103353721 + URR1B DNA MER1_type 2 225 0 4 1300 843 229 233 14 chr1 93844342 93844617 -103350815 + MTE2b LTR MaLR 1 335 -44 4 1301 1222 92 16 16 chr1 93848558 93848746 -103346686 - B2_Mm1t SINE B2 -3 190 3 4 1301 220 189 0 0 chr1 93851068 93851105 -103344327 + G-rich Low_complexity Low_complexity 2 38 0 4 1301 1013 122 152 5 chr1 93853084 93853281 -103342151 + URR1A DNA MER1_type 1 226 0 4 1301 393 22 0 0 chr1 93853483 93853529 -103341903 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1301 216 149 0 0 chr1 93853542 93853589 -103341843 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1301 212 0 36 0 chr1 93853933 93853961 -103341471 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1301 255 259 7 14 chr1 93855375 93855516 -103339916 + (CA)n Simple_repeat Simple_repeat 2 141 0 4 1301 451 262 38 82 chr1 93855536 93855694 -103339738 + MTE2b LTR MaLR 3 153 -226 4 1301 211 284 45 81 chr1 93856379 93856490 -103338942 + PB1D9 SINE Alu 1 107 -13 4 1301 256 256 39 0 chr1 93857784 93857862 -103337570 + Charlie1 DNA MER1_type 2647 2727 -54 5 1301 213 289 0 0 chr1 93858639 93858691 -103336741 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1301 225 307 13 0 chr1 93859182 93859257 -103336175 - B4 SINE B4 -213 79 4 5 1301 240 111 0 0 chr1 93861135 93861180 -103334252 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1301 357 302 16 49 chr1 93867215 93867337 -103328095 + MLT1A1 LTR MaLR 291 408 0 5 1301 781 168 28 14 chr1 93871569 93871714 -103323718 - B1_Mur1 SINE Alu -2 147 1 5 1301 677 118 35 12 chr1 93873945 93874116 -103321316 + (TCTG)n Simple_repeat Simple_repeat 2 176 0 5 1301 306 0 0 0 chr1 93874116 93874150 -103321282 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1301 461 326 55 21 chr1 93877308 93877504 -103317928 - L1MB7 LINE L1 -29 6155 5949 5 1301 1076 202 13 13 chr1 93877504 93877730 -103317702 + URR1A DNA MER1_type 1 226 0 5 1301 461 320 74 41 chr1 93877730 93877803 -103317629 - L1MB7 LINE L1 -230 5948 5876 5 1301 241 226 0 0 chr1 93878615 93878677 -103316755 + (CTG)n Simple_repeat Simple_repeat 1 62 0 5 1301 300 243 27 0 chr1 93879858 93879932 -103315500 + PB1D10 SINE Alu 22 97 -20 5 1301 322 309 8 0 chr1 93882337 93882460 -103312972 + (TTAGGG)n Simple_repeat Simple_repeat 2 125 0 5 1301 198 0 0 0 chr1 93883600 93883622 -103311810 + (CTG)n Simple_repeat Simple_repeat 3 24 0 5 1301 183 42 0 0 chr1 93886001 93886025 -103309407 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1301 913 55 31 0 chr1 93886025 93886153 -103309279 - B1_Mus2 SINE Alu -2 145 14 5 1301 188 231 18 55 chr1 93886527 93886582 -103308850 + L2c LINE L2 3092 3144 -243 5 1301 1185 62 7 0 chr1 93889069 93889215 -103306217 + B1_Mus1 SINE Alu 2 148 0 5 1301 761 169 163 32 chr1 93889923 93890113 -103305319 - B3 SINE B2 0 216 2 5 1301 228 143 0 0 chr1 93892867 93892909 -103302523 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1301 231 146 0 0 chr1 93893347 93893388 -103302044 + (GGA)n Simple_repeat Simple_repeat 2 42 0 5 1301 512 147 42 33 chr1 93894071 93894191 -103301241 - L1Md_F2 LINE L1 0 6582 6462 5 1301 311 292 0 0 chr1 93894853 93894925 -103300507 + ID4_ SINE ID 1 72 -11 5 1301 502 196 107 6 chr1 93895158 93895317 -103300115 - MER33 DNA MER1_type -7 317 143 5 1301 984 143 0 0 chr1 93896035 93896175 -103299257 - B1_Mur4 SINE Alu -10 140 1 5 1301 229 226 0 36 chr1 93896460 93896515 -103298917 - L1M5 LINE L1 -1090 5056 5004 5 1301 252 0 0 0 chr1 93899824 93899852 -103295580 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1301 393 22 0 0 chr1 93899852 93899897 -103295535 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1301 227 227 14 43 chr1 93901176 93901245 -103294187 + L3 LINE CR1 2249 2315 -2174 5 1301 7551 62 16 3 chr1 93904031 93905010 -103290422 + L1_Mur1 LINE L1 4849 5840 -46 5 1301 352 299 181 21 chr1 93905011 93905199 -103290233 + L1MEe LINE L1 1458 1822 -4580 5 1301 436 303 81 22 chr1 93905543 93905816 -103289616 + L1MEe LINE L1 3189 3477 -2905 5 1301 1268 167 28 0 chr1 93905818 93906033 -103289399 + URR1B DNA MER1_type 1 221 -4 5 1301 389 268 141 51 chr1 93906167 93906233 -103289199 + L1MEe LINE L1 3877 3946 -2436 5 1301 2144 156 75 18 chr1 93906233 93906618 -103288814 + MTB_Mm LTR MaLR 1 407 0 5 1301 389 288 143 48 chr1 93906618 93907146 -103288286 + L1MEe LINE L1 3941 4543 -1839 5 1301 798 232 278 14 chr1 93908363 93908492 -103286940 + ORR1E LTR MaLR 1 136 -223 5 1301 234 0 0 0 chr1 93908492 93908518 -103286914 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1301 798 232 278 14 chr1 93908518 93908672 -103286760 + ORR1E LTR MaLR 137 358 -1 5 1301 328 248 0 23 chr1 93909272 93909400 -103286032 + (CTG)n Simple_repeat Simple_repeat 3 127 0 5 1301 381 163 21 85 chr1 93910801 93910895 -103284537 + MT2A LTR ERVL 1 88 -445 5 1301 431 184 153 0 chr1 93910910 93911008 -103284424 - PB1D9 SINE Alu -5 115 3 5 1301 1874 199 115 12 chr1 93911008 93911371 -103284061 + MT2A LTR ERVL 70 468 -65 5 1301 252 0 0 0 chr1 93911371 93911399 -103284033 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1301 1874 199 115 12 chr1 93911399 93911452 -103283980 + MT2A LTR ERVL 469 528 -5 5 1301 1089 173 223 8 chr1 93914468 93914719 -103280713 + ORR1D1 LTR MaLR 1 305 -69 5 1301 347 170 0 0 chr1 93914866 93914919 -103280513 + ORR1D1 LTR MaLR 310 362 -8 5 1301 1119 239 178 50 chr1 93915594 93915676 -103279756 - MTEa LTR MaLR 0 379 294 5 1301 2628 114 71 2 chr1 93915676 93916070 -103279362 + MTC LTR MaLR 1 421 0 5 1301 1119 239 178 50 chr1 93916070 93916308 -103279124 - MTEa LTR MaLR -86 293 18 5 1301 981 156 200 0 chr1 93916352 93916532 -103278900 + B3 SINE B2 1 216 0 5 1301 43 0 0 0 chr1 93916867 93916910 -103278522 + AT_rich Low_complexity Low_complexity 1 43 0 5 1301 315 271 89 83 chr1 93917381 93917538 -103277894 - RLTR42-int LTR ERVK -4208 1314 1157 5 1301 225 65 0 0 chr1 93918960 93918991 -103276441 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1301 1064 270 85 23 chr1 93919617 93919969 -103275463 + MTEa LTR MaLR 1 374 -5 5 1301 594 193 25 8 chr1 93921085 93921200 -103274232 + MTC LTR MaLR 1 117 -304 5 1301 207 0 0 0 chr1 93921200 93921223 -103274209 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1301 909 55 0 2 chr1 93921231 93921345 -103274087 + L1Md_F3 LINE L1 5443 5586 -297 5 1301 7952 45 11 4 chr1 93921345 93922322 -103273110 + L1Md_F3 LINE L1 5587 6570 -14 5 1301 1205 138 191 0 chr1 93922340 93922565 -103272867 + MTC LTR MaLR 154 421 0 5 1301 192 77 0 0 chr1 93925193 93925219 -103270213 + (CAG)n Simple_repeat Simple_repeat 3 28 0 5 1301 549 310 28 14 chr1 93927545 93927689 -103267743 + RSINE1 SINE B4 1 146 -19 5 1301 4007 160 96 74 chr1 93929799 93930681 -103264751 + RMER19B LTR ERVK 1 902 0 5 1301 734 219 33 46 chr1 93930687 93930840 -103264592 + B3A SINE B2 1 151 -47 5 1301 306 303 130 58 chr1 93934815 93934969 -103260463 + RSINE1 SINE B4 1 165 0 5 1301 243 250 0 0 chr1 93934969 93935025 -103260407 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1301 429 238 0 0 chr1 93937294 93937437 -103257995 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 1301 3851 123 78 32 chr1 93937546 93938269 -103257163 + RMER6A LTR ERVK 1 756 0 5 1301 303 295 61 49 chr1 93938271 93938435 -103256997 + L1M5 LINE L1 3115 3280 -2866 5 1301 315 340 139 19 chr1 93938622 93938988 -103256444 + L1MC LINE L1 3371 3780 -2366 5 1301 1272 215 200 17 chr1 93939478 93939828 -103255604 - MTD LTR MaLR -3 416 3 5 1301 279 0 0 0 chr1 93940411 93940442 -103254990 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1301 417 20 0 0 chr1 93942588 93942638 -103252794 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1301 380 262 26 94 chr1 93942764 93942876 -103252556 + MLT1A1 LTR MaLR 220 367 -41 5 1301 2252 77 47 16 chr1 93942876 93943193 -103252239 + ORR1A2 LTR MaLR 1 327 0 5 1301 380 248 9 95 chr1 93943193 93943228 -103252204 + MLT1A1 LTR MaLR 368 397 -11 5 1301 190 116 0 44 chr1 93943451 93943496 -103251936 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 1301 203 281 79 50 chr1 93945541 93945642 -103249790 + MIRc SINE MIR 37 140 -128 5 1301 438 322 126 16 chr1 93948065 93948311 -103247121 + B4 SINE B4 20 292 0 5 1301 185 217 217 0 chr1 93948868 93948937 -103246495 + L3 LINE CR1 2009 2092 -2397 5 1301 342 0 0 0 chr1 93952922 93952960 -103242472 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1301 742 294 76 24 chr1 93953735 93953986 -103241446 + Tigger7 DNA MER2_type 126 389 -2102 5 1301 275 193 175 44 chr1 93953992 93954106 -103241326 + Tigger7 DNA MER2_type 2204 2332 -159 5 1301 1242 54 0 0 chr1 93954408 93954555 -103240877 - B1_Mus2 SINE Alu 0 147 1 5 1301 861 232 136 109 chr1 93954555 93954923 -103240509 + MTE2a LTR MaLR 2 379 0 5 1301 235 355 52 31 chr1 93954981 93955077 -103240355 - MER21B LTR ERV1 -619 244 147 5 1301 21 36 0 0 chr1 93955307 93955335 -103240097 + AT_rich Low_complexity Low_complexity 1 28 0 5 1301 329 340 108 33 chr1 93955509 93955749 -103239683 - L1M5 LINE L1 -1990 4156 3899 5 1301 183 42 0 0 chr1 93957590 93957614 -103237818 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1301 651 206 110 0 chr1 93957621 93957757 -103237675 + RSINE1 SINE B4 3 153 -12 5 1301 23 54 0 0 chr1 93957758 93957795 -103237637 + AT_rich Low_complexity Low_complexity 1 37 0 5 1301 236 289 0 110 chr1 93960277 93960386 -103235046 - Tigger1 DNA MER2_type -993 1425 1329 5 1301 1281 136 25 0 chr1 93964012 93964210 -103231222 + ORR1A4 LTR MaLR 1 203 -126 5 1301 802 191 7 0 chr1 93964242 93964378 -103231054 + Lx6 LINE L1 6549 6685 -775 5 1301 1608 239 44 46 chr1 93964387 93964822 -103230610 + Lx6 LINE L1 7022 7455 -5 5 1301 737 254 65 10 chr1 93964853 93965052 -103230380 + B3 SINE B2 1 210 -6 5 1301 449 76 15 0 chr1 93965755 93965821 -103229611 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1301 887 240 24 10 chr1 93965858 93966064 -103229368 + B3 SINE B2 1 209 -7 5 1301 192 77 0 0 chr1 93966292 93966318 -103229114 + (TAGTG)n Simple_repeat Simple_repeat 3 28 0 5 1301 342 0 0 0 chr1 93966321 93966359 -103229073 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1301 1408 284 27 27 chr1 93967249 93967763 -103227669 - L1_Rod LINE L1 -1536 4311 3798 5 1301 189 277 0 0 chr1 93967865 93967912 -103227520 + L2 LINE L2 1271 1317 -2102 5 1301 423 0 0 0 chr1 93968028 93968075 -103227357 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1301 670 242 80 27 chr1 93968445 93968632 -103226800 + B3A SINE B2 2 198 0 5 1301 229 302 167 0 chr1 93968874 93969000 -103226432 + L1MEg LINE L1 209 355 -5887 5 1301 226 236 65 113 chr1 93969219 93969343 -103226089 + L1MEg LINE L1 3822 3939 -2207 5 1301 515 323 92 52 chr1 93969425 93969696 -103225736 + B4A SINE B4 1 282 -10 5 1301 849 84 0 0 chr1 93969723 93969842 -103225590 + (TC)n Simple_repeat Simple_repeat 1 119 0 5 1301 312 232 0 0 chr1 93970111 93970167 -103225265 + B3 SINE B2 1 56 -160 5 1301 1450 134 4 30 chr1 93973300 93973531 -103221901 - URR1B DNA MER1_type 0 225 1 5 1301 1745 35 26 30 chr1 93975221 93975455 -103219977 + L1Md_F3 LINE L1 6351 6583 -1 5 1301 230 227 64 118 chr1 93975958 93976068 -103219364 - ORR1A3-int LTR MaLR -675 1288 1185 5 1301 243 0 0 0 chr1 93978170 93978197 -103217235 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1301 482 336 8 0 chr1 93978211 93978339 -103217093 - RSINE1 SINE B4 -26 139 11 5 1302 746 237 17 45 chr1 93979041 93979062 -103216370 - B3 SINE B2 -44 172 151 6 1302 396 0 0 0 chr1 93979062 93979106 -103216326 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1302 746 237 17 45 chr1 93979106 93979261 -103216171 - B3 SINE B2 -66 150 1 6 1302 978 279 99 15 chr1 93980808 93981070 -103214362 + B4 SINE B4 9 292 0 6 1302 1250 48 0 0 chr1 93981115 93981262 -103214170 - B1_Mm SINE Alu 0 147 1 6 1302 606 277 39 5 chr1 93981330 93981533 -103213899 + L1M5 LINE L1 5256 5465 -699 6 1302 324 328 78 0 chr1 93981829 93981945 -103213487 + MLT1D LTR MaLR 4 128 -377 6 1302 249 252 135 24 chr1 93981951 93982077 -103213355 + L1MC5 LINE L1 6751 6890 -1071 6 1302 399 41 0 0 chr1 93982131 93982180 -103213252 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1302 279 0 0 0 chr1 93987874 93987905 -103207527 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1302 478 248 105 49 chr1 93988678 93988945 -103206487 - L1MC3 LINE L1 -226 7559 7278 6 1302 618 152 76 0 chr1 93989162 93989267 -103206165 + B1_Mur3 SINE Alu 21 133 -16 6 1302 303 93 0 0 chr1 93989359 93989402 -103206030 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1302 1097 140 0 12 chr1 93989412 93989578 -103205854 + B2_Mm2 SINE B2 5 168 -27 6 1302 22692 16 3 0 chr1 93989582 93992180 -103203252 + L1Md_A LINE L1 2972 5577 -306 6 1302 8656 26 0 0 chr1 93992180 93993164 -103202268 + L1Md_A LINE L1 5596 6579 -3 6 1302 21 0 0 0 chr1 93993234 93993255 -103202177 + AT_rich Low_complexity Low_complexity 1 21 0 6 1302 218 128 43 0 chr1 93993374 93993421 -103202011 + GA-rich Low_complexity Low_complexity 3 51 0 6 1302 485 167 157 0 chr1 93993833 93993941 -103201491 - ID_B1 SINE B4 -7 217 93 6 1302 261 0 0 0 chr1 93994190 93994219 -103201213 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1302 22 88 0 0 chr1 93994222 93994279 -103201153 + AT_rich Low_complexity Low_complexity 1 57 0 6 1302 745 258 124 53 chr1 93994295 93994561 -103200871 + B4A SINE B4 8 292 0 6 1302 261 204 18 18 chr1 93994785 93994840 -103200592 + B4 SINE B4 24 78 -214 6 1302 276 265 135 19 chr1 93996461 93996565 -103198867 + PB1D10 SINE Alu 1 116 -1 6 1302 247 191 14 14 chr1 93999128 93999197 -103196235 + GA-rich Low_complexity Low_complexity 1 69 0 6 1302 241 325 11 11 chr1 93999377 93999464 -103195968 - ID SINE ID -135 89 3 6 1302 237 144 55 22 chr1 93999823 93999890 -103195542 - MIRc SINE MIR -78 190 114 6 1302 232 290 240 7 chr1 94003276 94003422 -103192010 - MER3 DNA MER1_type -16 193 14 1 1302 222 318 70 59 chr1 94003727 94003752 -103191680 - B2_Mm2 SINE B2 -2 193 5 2 1302 783 262 0 12 chr1 94003752 94003914 -103191518 - RSINE1 SINE B4 0 165 6 3 1302 281 24 49 0 chr1 94004465 94004506 -103190926 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1302 351 150 0 0 chr1 94006619 94006679 -103188753 + (GGA)n Simple_repeat Simple_repeat 1 60 0 5 1302 25 0 0 0 chr1 94006702 94006727 -103188705 + AT_rich Low_complexity Low_complexity 1 25 0 6 1302 351 221 0 0 chr1 94006919 94007005 -103188427 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1302 1450 59 37 11 chr1 94007453 94007642 -103187790 - B2_Mm2 SINE B2 0 195 2 8 1302 277 239 92 86 chr1 94008869 94009023 -103186409 + MIRc SINE MIR 13 158 -104 9 1302 387 105 0 0 chr1 94009031 94009088 -103186344 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1302 243 0 0 0 chr1 94011195 94011222 -103184210 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1302 337 255 86 93 chr1 94013224 94013372 -103182060 + MIRb SINE MIR 64 208 -60 1 1302 351 0 0 0 chr1 94013372 94013411 -103182021 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1302 332 253 86 96 chr1 94013411 94013467 -103181965 + MIR SINE MIR 205 262 0 1 1302 952 75 113 0 chr1 94013482 94013615 -103181817 + B1_Mus1 SINE Alu 1 148 0 1 1302 590 256 84 35 chr1 94013695 94013911 -103181521 + B3A SINE B2 2 210 -6 1 1302 853 276 55 15 chr1 94015537 94015809 -103179623 + B4A SINE B4 1 283 -9 1 1302 414 0 0 0 chr1 94015819 94015865 -103179567 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1302 27 0 0 0 chr1 94016406 94016433 -103178999 + AT_rich Low_complexity Low_complexity 1 27 0 1 1302 307 296 118 34 chr1 94016439 94016701 -103178731 + L1MC4 LINE L1 7548 7831 -211 1 1302 7070 45 1 14 chr1 94016701 94017574 -103177858 + L1Md_F2 LINE L1 5721 6582 0 2 1302 21 57 0 0 chr1 94018618 94018653 -103176779 + AT_rich Low_complexity Low_complexity 1 35 0 2 1302 1417 80 37 0 chr1 94018897 94019084 -103176348 + B2_Mm2 SINE B2 2 195 0 2 1302 287 272 10 98 chr1 94020139 94020241 -103175191 + MT2B LTR ERVL 149 241 -360 2 1302 372 293 0 29 chr1 94020151 94020253 -103175179 + ID_B1 SINE B4 78 176 -48 2 1302 503 250 0 27 chr1 94020166 94020277 -103175155 + PB1D10 SINE Alu 9 116 -1 2 1302 183 42 0 0 chr1 94021761 94021785 -103173647 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1302 868 31 0 0 chr1 94022138 94022235 -103173197 + L1Md_F2 LINE L1 5490 5586 -297 2 1302 8477 34 0 9 chr1 94022235 94023239 -103172193 + L1Md_F2 LINE L1 5587 6581 -1 2 1302 446 257 135 10 chr1 94024259 94024452 -103170980 + L1M4 LINE L1 4948 5164 -982 2 1302 367 284 139 26 chr1 94024514 94024995 -103170437 + L1M4 LINE L1 5274 5825 -349 2 1302 361 222 72 12 chr1 94025340 94025436 -103169996 - B1F2 SINE Alu -17 103 3 2 1302 384 22 0 0 chr1 94025784 94025829 -103169603 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1302 346 291 171 63 chr1 94029199 94029465 -103165967 + L1MC LINE L1 2804 3074 -3072 3 1302 222 37 0 0 chr1 94029470 94029497 -103165935 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1302 227 330 0 65 chr1 94029832 94029939 -103165493 + Cheshire DNA MER1_type 4 103 -2317 3 1302 1182 74 0 0 chr1 94030090 94030238 -103165194 + B1_Mus1 SINE Alu 1 148 0 3 1302 184 30 61 0 chr1 94030238 94030271 -103165161 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 3 1302 380 308 122 19 chr1 94030494 94030905 -103164527 + L1MC LINE L1 3933 4383 -1763 3 1302 4651 72 12 0 chr1 94030905 94031498 -103163934 + L1_Mus3 LINE L1 6039 6638 0 3 1302 255 314 161 28 chr1 94031498 94031621 -103163811 + L1MC LINE L1 4384 4537 -1609 3 1302 255 172 17 0 chr1 94032534 94032592 -103162840 + L1ME3A LINE L1 5879 5937 -236 3 1302 886 186 0 0 chr1 94034578 94034723 -103160709 + B1_Mur4 SINE Alu 5 149 -1 3 1302 183 204 0 0 chr1 94034723 94034767 -103160665 + GA-rich Low_complexity Low_complexity 1 44 0 3 1302 503 226 32 0 chr1 94035327 94035420 -103160012 + B1F SINE Alu 18 113 -36 4 1302 243 0 0 0 chr1 94035420 94035447 -103159985 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1302 817 273 54 0 chr1 94036657 94036862 -103158570 + B3 SINE B2 1 216 0 4 1302 803 10 10 0 chr1 94037665 94037761 -103157671 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1302 993 255 31 35 chr1 94037761 94038049 -103157383 + B4A SINE B4 2 288 -4 4 1302 233 209 0 0 chr1 94038053 94038096 -103157336 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1302 461 227 0 22 chr1 94040779 94040869 -103154563 + PB1D9 SINE Alu 18 105 -15 4 1302 302 313 0 0 chr1 94042689 94042772 -103152660 + ID2 SINE ID 1 83 0 4 1302 214 167 0 0 chr1 94042789 94042831 -103152601 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 4 1302 407 305 119 36 chr1 94045278 94045472 -103149960 - MER20 DNA MER1_type -5 214 5 4 1302 471 263 44 0 chr1 94046169 94046183 -103149249 - PB1D9 SINE Alu 0 120 107 5 1302 189 0 0 0 chr1 94046183 94046204 -103149228 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1302 471 263 44 0 chr1 94046204 94046303 -103149129 - PB1D9 SINE Alu -14 106 3 5 1302 234 237 51 0 chr1 94046608 94046667 -103148765 - L1M6 LINE L1 -4750 1746 1685 5 1302 1066 51 14 0 chr1 94047139 94047277 -103148155 - B1_Mus1 SINE Alu -2 146 7 5 1302 2268 149 40 3 chr1 94047270 94047640 -103147792 - MTB_Mm LTR MaLR -23 384 1 5 1302 686 307 99 48 chr1 94048202 94048555 -103146877 + MTEa LTR MaLR 7 377 -2 5 1302 234 266 127 45 chr1 94048687 94048931 -103146501 + L1MD LINE L1 2484 2747 -3399 5 1302 32 0 0 0 chr1 94048964 94048996 -103146436 + AT_rich Low_complexity Low_complexity 1 32 0 5 1302 264 289 116 81 chr1 94049035 94049060 -103146372 + B4 SINE B4 64 169 -123 5 1302 754 165 90 0 chr1 94049060 94049193 -103146239 + B1_Mur4 SINE Alu 6 150 0 5 1302 264 289 116 81 chr1 94049193 94049208 -103146224 + B4 SINE B4 170 244 -48 5 1302 614 68 0 11 chr1 94049208 94049297 -103146135 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 6 1302 542 200 96 0 chr1 94049380 94049495 -103145937 + ID_B1 SINE B4 97 222 -2 6 1302 332 262 154 21 chr1 94049508 94049742 -103145690 + L1M4 LINE L1 2911 3175 -2971 6 1302 312 275 64 9 chr1 94049742 94049852 -103145580 + PB1D10 SINE Alu 1 116 -1 6 1302 302 272 118 0 chr1 94049875 94050045 -103145387 + L1M4 LINE L1 3228 3420 -2726 6 1302 460 253 65 12 chr1 94050336 94050504 -103144928 - L1MC4a LINE L1 -1291 6591 6415 6 1302 773 196 97 82 chr1 94050720 94050881 -103144551 + B1_Mur1 SINE Alu 2 311 0 6 1302 614 283 77 19 chr1 94052331 94052655 -103142777 + L1M4 LINE L1 4333 4675 -1471 6 1302 304 331 52 8 chr1 94052936 94053070 -103142362 + L1MC4 LINE L1 740 879 -5336 6 1302 350 302 138 31 chr1 94053163 94053358 -103142074 + L1M4 LINE L1 5321 5536 -628 6 1302 471 260 10 0 chr1 94053539 94053584 -103141848 + ID SINE ID 36 81 -143 6 1302 330 262 119 18 chr1 94053584 94053693 -103141739 + PB1D9 SINE Alu 1 120 0 6 1302 21 0 0 0 chr1 94054409 94054430 -103141002 + AT_rich Low_complexity Low_complexity 1 21 0 6 1302 513 196 53 0 chr1 94054757 94054875 -103140557 + B1_Mus2 SINE Alu 1 126 -24 7 1302 1756 227 19 8 chr1 94055012 94055372 -103140060 + ORR1D2 LTR MaLR 7 370 0 7 1302 238 280 93 0 chr1 94055543 94055618 -103139814 + Charlie1 DNA MER1_type 1 82 -2699 7 1302 414 0 0 0 chr1 94056501 94056547 -103138885 + (TCTCC)n Simple_repeat Simple_repeat 3 48 0 7 1302 569 278 160 5 chr1 94056549 94056737 -103138695 + RLTR20D LTR ERVK 352 568 0 7 1302 367 219 0 12 chr1 94057007 94057090 -103138342 + (ATG)n Simple_repeat Simple_repeat 3 84 0 7 1302 846 167 0 0 chr1 94057090 94057270 -103138162 + (TGG)n Simple_repeat Simple_repeat 1 180 0 7 1302 388 241 107 60 chr1 94061325 94061475 -103133957 - MER20 DNA MER1_type -58 161 5 7 1302 324 0 0 0 chr1 94063648 94063684 -103131748 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1302 240 321 30 30 chr1 94065414 94065549 -103129883 + (TATATG)n Simple_repeat Simple_repeat 1 135 0 7 1302 404 313 102 5 chr1 94072937 94073133 -103122299 - L1MD LINE L1 -848 5298 5084 8 1302 204 204 0 0 chr1 94075613 94075657 -103119775 + (CCA)n Simple_repeat Simple_repeat 2 45 0 8 1302 43 0 0 0 chr1 94076329 94076372 -103119060 + GC_rich Low_complexity Low_complexity 1 43 0 8 1302 212 158 0 17 chr1 94076432 94076490 -103118942 + (CCCG)n Simple_repeat Simple_repeat 4 60 0 8 1302 21 0 0 0 chr1 94076577 94076598 -103118834 + GC_rich Low_complexity Low_complexity 1 21 0 8 1302 26 0 0 0 chr1 94076640 94076666 -103118766 + GC_rich Low_complexity Low_complexity 1 26 0 8 1302 254 271 8 24 chr1 94076669 94076794 -103118638 + (CGG)n Simple_repeat Simple_repeat 2 124 0 8 1302 27 49 0 0 chr1 94077501 94077542 -103117890 + GC_rich Low_complexity Low_complexity 1 41 0 8 1302 1819 107 102 40 chr1 94078644 94078967 -103116465 + Lx LINE L1 6307 6649 -5 8 1302 547 277 30 36 chr1 94080570 94080735 -103114697 + RSINE1 SINE B4 2 165 0 8 1302 677 274 43 26 chr1 94080806 94081038 -103114394 + RLTR42-int LTR ERVK 1165 1400 -4122 9 1302 338 349 40 0 chr1 94081399 94081525 -103113907 - MER115 DNA Tip100 -463 230 100 9 1302 535 336 80 66 chr1 94082843 94083206 -103112226 + L1MEd LINE L1 696 1063 -5056 9 1302 1148 107 204 21 chr1 94083610 94083801 -103111631 - URR1A DNA MER1_type 0 226 1 9 1302 851 311 106 44 chr1 94084467 94084854 -103110578 - MLT1E1A LTR MaLR -118 562 152 9 1302 222 222 0 0 chr1 94084990 94085044 -103110388 + A-rich Low_complexity Low_complexity 1 54 0 9 1302 360 386 64 0 chr1 94085112 94085345 -103110087 + MER34 LTR ERV1 289 536 -6 9 1302 256 271 97 76 chr1 94085545 94085689 -103109743 - MLT1A1 LTR MaLR -8 400 254 9 1302 395 224 10 30 chr1 94085705 94085722 -103109710 + ID_B1 SINE B4 124 222 -2 9 1302 653 48 0 0 chr1 94085722 94085806 -103109626 + B1_Mur4 SINE Alu 65 148 -2 9 1302 326 243 64 64 chr1 94085996 94086106 -103109326 - MLT1A1 LTR MaLR -295 113 4 9 1302 986 152 6 0 chr1 94086454 94086631 -103108801 + GA-rich Low_complexity Low_complexity 3 180 0 1 1302 614 14 0 0 chr1 94086632 94086703 -103108729 + (GAA)n Simple_repeat Simple_repeat 1 71 0 1 1302 681 13 0 0 chr1 94086790 94086868 -103108564 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 1302 1153 268 98 6 chr1 94087031 94087358 -103108074 - ORR1E LTR MaLR -2 357 1 1 1302 830 224 77 0 chr1 94087633 94087803 -103107629 - B3 SINE B2 -25 191 9 1 1302 385 353 102 25 chr1 94087926 94088289 -103107143 + L1M5 LINE L1 2139 2529 -3617 1 1302 1890 143 112 6 chr1 94088816 94089146 -103106286 + ORR1B2 LTR MaLR 1 365 -2 1 1302 359 256 93 88 chr1 94089543 94089976 -103105456 + L1MD LINE L1 5392 5824 -509 1 1302 207 318 45 60 chr1 94090032 94090166 -103105266 - MIRb SINE MIR -23 245 114 1 1302 279 260 36 83 chr1 94090508 94090592 -103104840 + BC1_Mm scRNA scRNA 3 82 -70 1 1302 818 277 10 5 chr1 94090530 94090722 -103104710 + ID_B1 SINE B4 22 214 -10 1 1302 207 0 0 0 chr1 94091421 94091444 -103103988 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1302 468 35 0 0 chr1 94091479 94091537 -103103895 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1302 342 0 0 0 chr1 94092246 94092284 -103103148 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1302 474 234 132 8 chr1 94092885 94093014 -103102418 - B1F2 SINE Alu 0 149 5 1 1302 235 353 80 38 chr1 94093915 94094140 -103101292 - MIRb SINE MIR -34 228 1 1 1302 660 239 38 25 chr1 94094620 94094779 -103100653 + RSINE1 SINE B4 1 161 -4 1 1302 1343 91 27 5 chr1 94094806 94094994 -103100438 + B2_Mm2 SINE B2 1 192 -3 1 1302 1225 110 96 46 chr1 94095084 94095323 -103100109 - MT2C_Mm LTR ERVL 0 475 225 1 1302 311 294 63 32 chr1 94095260 94095355 -103100077 + MLT1A LTR MaLR 15 112 -262 1 1302 213 139 0 0 chr1 94095695 94095738 -103099694 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1302 1417 145 0 31 chr1 94096447 94096675 -103098757 - URR1B DNA MER1_type -2 223 3 1 1302 336 161 0 0 chr1 94097144 94097206 -103098226 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1302 634 261 102 6 chr1 94098195 94098372 -103097060 + B3A SINE B2 4 197 -1 1 1302 532 168 75 0 chr1 94098554 94098661 -103096771 - MTE2b LTR MaLR -28 351 237 1 1302 920 217 58 19 chr1 94098776 94098983 -103096449 - MTE2b LTR MaLR -140 239 25 1 1302 438 240 115 0 chr1 94100372 94100468 -103094964 + B4A SINE B4 184 290 -2 1 1302 298 344 0 48 chr1 94100488 94100677 -103094755 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 1302 510 288 96 24 chr1 94100733 94100761 -103094671 - B3A SINE B2 -18 180 153 1 1302 351 0 0 0 chr1 94100761 94100800 -103094632 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1302 510 288 96 24 chr1 94100800 94100938 -103094494 - B3A SINE B2 -46 152 3 1 1302 391 298 65 88 chr1 94100942 94101203 -103094229 - L1MD LINE L1 -2123 4023 3769 1 1302 285 75 0 0 chr1 94101848 94101888 -103093544 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1302 663 25 0 0 chr1 94102117 94102198 -103093234 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1302 495 282 64 0 chr1 94102202 94102312 -103093120 - B3A SINE B2 -55 143 27 1 1302 288 0 0 0 chr1 94102339 94102371 -103093061 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1302 747 201 15 0 chr1 94102373 94102507 -103092925 - B1_Mur3 SINE Alu -4 145 10 1 1302 261 255 0 0 chr1 94102558 94102609 -103092823 + RLTR19-int LTR ERVK 4059 4109 -2028 1 1302 674 159 24 21 chr1 94103268 94103647 -103091785 + (TCTA)n Simple_repeat Simple_repeat 1 379 0 1 1302 395 106 0 15 chr1 94103919 94103986 -103091446 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1302 386 291 150 13 chr1 94104340 94104493 -103090939 + LTR16D LTR ERVL 478 651 0 1 1302 648 186 118 15 chr1 94104524 94104660 -103090772 + B1_Mur4 SINE Alu 1 150 0 1 1302 522 46 0 0 chr1 94104681 94104746 -103090686 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1302 230 192 0 52 chr1 94105329 94105406 -103090026 + (TTTA)n Simple_repeat Simple_repeat 3 75 0 1 1302 817 197 94 20 chr1 94105523 94105725 -103089707 - B4A SINE B4 -75 217 1 1 1302 1158 170 34 10 chr1 94106059 94106267 -103089165 - B3 SINE B2 -3 213 1 1 1302 766 219 112 6 chr1 94106286 94106465 -103088967 - B3A SINE B2 0 198 1 1 1302 529 192 192 0 chr1 94106784 94106909 -103088523 - B1_Mur2 SINE Alu 0 149 1 1 1303 2060 171 8 48 chr1 94110563 94110957 -103084475 - ORR1C1 LTR MaLR 0 378 1 1 1303 185 308 0 0 chr1 94110970 94111022 -103084410 + MIRm SINE MIR 215 266 -10 1 1303 210 118 0 0 chr1 94112923 94112957 -103082475 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1303 699 260 81 6 chr1 94113218 94113392 -103082040 - ID_B1 SINE B4 -2 222 36 1 1303 296 287 130 17 chr1 94113818 94113995 -103081437 - B3A SINE B2 0 198 2 1 1303 588 184 16 34 chr1 94114005 94114147 -103081285 - B1F1 SINE Alu -5 143 6 1 1303 399 282 18 9 chr1 94114454 94114565 -103080867 + RSINE1 SINE B4 2 113 -52 1 1303 338 0 24 0 chr1 94114581 94114623 -103080809 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1303 738 189 0 75 chr1 94114965 94115125 -103080307 - B1_Mur3 SINE Alu 0 149 2 1 1303 301 294 173 31 chr1 94115165 94115812 -103079620 - L1MEd LINE L1 -1505 4641 3967 1 1303 522 0 0 0 chr1 94115868 94115926 -103079506 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 1303 351 0 0 0 chr1 94115926 94115965 -103079467 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1303 598 253 7 20 chr1 94115965 94116118 -103079314 - B3 SINE B2 -64 152 2 1 1303 627 324 99 8 chr1 94116766 94117121 -103078311 + MLT1B LTR MaLR 4 390 0 1 1303 3177 30 17 7 chr1 94117164 94117571 -103077861 + IAPLTR2a LTR ERVK 1 411 0 1 1303 564 328 64 67 chr1 94118220 94118547 -103076885 + MT2A LTR ERVL 5 330 -203 1 1303 622 256 140 23 chr1 94118446 94118710 -103076722 - MTD-int LTR MaLR -963 295 1 1 1303 1784 216 68 5 chr1 94118710 94119091 -103076341 - MTD LTR MaLR -14 405 1 1 1303 290 313 32 52 chr1 94120276 94120431 -103075001 - MIR3 SINE MIR -50 158 7 1 1303 387 0 0 0 chr1 94120595 94120638 -103074794 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1303 192 339 89 66 chr1 94123891 94124150 -103071282 - L2 LINE L2 -388 3031 2767 1 1303 269 226 0 12 chr1 94124152 94124237 -103071195 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1303 273 282 11 48 chr1 94124262 94124448 -103070984 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 1303 244 186 10 49 chr1 94125193 94125295 -103070137 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 1 1303 242 204 20 0 chr1 94127071 94127120 -103068312 + L2b LINE L2 3326 3375 0 1 1303 267 333 120 0 chr1 94129152 94129377 -103066055 + L1ME1 LINE L1 5744 5995 -184 1 1303 1320 213 67 29 chr1 94131104 94131433 -103063999 - Lx8 LINE L1 -581 7063 6574 1 1303 236 188 312 0 chr1 94131443 94131507 -103063925 + Lx8 LINE L1 7060 7143 -330 1 1303 666 0 0 0 chr1 94133290 94133364 -103062068 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1303 221 180 0 20 chr1 94134120 94134171 -103061261 + GA-rich Low_complexity Low_complexity 2 51 0 1 1303 338 288 0 0 chr1 94134496 94134576 -103060856 + ID4_ SINE ID 2 81 -2 1 1303 582 15 0 0 chr1 94136455 94136522 -103058910 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1303 303 333 7 28 chr1 94137772 94137917 -103057515 + ID_B1 SINE B4 82 223 -1 1 1303 260 329 0 0 chr1 94137921 94137997 -103057435 + ID4_ SINE ID 8 83 0 1 1303 420 229 19 13 chr1 94138040 94138195 -103057237 + (TCCA)n Simple_repeat Simple_repeat 1 156 0 1 1303 345 208 16 55 chr1 94138369 94138496 -103056936 + (TG)n Simple_repeat Simple_repeat 1 122 0 1 1303 306 0 0 0 chr1 94138504 94138538 -103056894 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 1303 235 122 0 39 chr1 94138592 94138643 -103056789 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1303 530 315 24 24 chr1 94138700 94138727 -103056705 - B4A SINE B4 0 292 267 1 1303 339 25 0 0 chr1 94138727 94138767 -103056665 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1303 530 315 24 24 chr1 94138767 94138944 -103056488 - B4A SINE B4 -26 266 88 1 1303 919 61 8 8 chr1 94138946 94139078 -103056354 + (TCTCC)n Simple_repeat Simple_repeat 1 132 0 1 1303 413 256 105 0 chr1 94139104 94139237 -103056195 - B1_Mus2 SINE Alu 0 147 1 1 1303 417 20 0 0 chr1 94140086 94140136 -103055296 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1303 593 14 14 0 chr1 94140533 94140607 -103054825 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 1 1303 3312 30 2 0 chr1 94142083 94142478 -103052954 - MTA_Mm LTR MaLR 0 396 1 1 1303 490 260 81 20 chr1 94143288 94143437 -103051995 - RSINE1 SINE B4 0 165 8 1 1303 1090 79 0 0 chr1 94145030 94145170 -103050262 + B1_Mus2 SINE Alu 1 140 -7 1 1303 249 68 85 0 chr1 94145216 94145275 -103050157 + A-rich Low_complexity Low_complexity 2 65 0 1 1303 187 180 96 39 chr1 94145561 94145613 -103049819 + MIRm SINE MIR 91 145 -131 1 1303 264 274 13 33 chr1 94147481 94147578 -103047854 - MLT2B5 LTR ERVL -283 318 225 1 1303 306 73 0 0 chr1 94147639 94147680 -103047752 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1303 282 194 0 0 chr1 94148493 94148560 -103046872 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1303 2176 165 40 5 chr1 94150876 94151271 -103044161 + MTC LTR MaLR 2 410 -11 1 1303 842 282 39 21 chr1 94151414 94151693 -103043739 + B4A SINE B4 1 284 -8 1 1303 2231 181 87 23 chr1 94154133 94154618 -103040814 - RMER15 LTR ERVL -3 572 57 1 1303 201 225 0 0 chr1 94156047 94156087 -103039345 + C-rich Low_complexity Low_complexity 1 40 0 1 1303 1672 176 79 28 chr1 94158430 94158786 -103036646 + ORR1D1 LTR MaLR 1 374 0 2 1303 1189 268 21 3 chr1 94159379 94159664 -103035768 + MTE2b LTR MaLR 82 371 -8 2 1303 633 27 0 0 chr1 94160624 94160699 -103034733 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1303 293 345 86 0 chr1 94162192 94162331 -103033101 - MTE-int LTR MaLR -1391 189 39 2 1303 236 265 24 24 chr1 94162840 94162925 -103032507 + MTEb LTR MaLR 294 378 -1 2 1303 1376 220 43 60 chr1 94163033 94163471 -103031961 - MTE2a LTR MaLR -13 406 6 2 1303 900 292 70 50 chr1 94163480 94163554 -103031878 + MTE-int LTR MaLR 124 209 -1371 2 1303 1994 215 47 8 chr1 94163554 94164061 -103031371 - RLTR11A2 LTR ERVK 0 527 1 2 1303 900 292 70 50 chr1 94164061 94164383 -103031049 + MTE-int LTR MaLR 210 528 -1052 2 1303 539 321 37 0 chr1 94164533 94164695 -103030737 + MTE-int LTR MaLR 1374 1541 -39 2 1303 263 233 123 0 chr1 94164903 94164976 -103030456 + MTEb LTR MaLR 278 359 -20 2 1303 258 333 69 32 chr1 94165061 94165278 -103030154 - LTR16B1 LTR ERVL -161 319 95 2 1303 309 301 113 59 chr1 94165316 94165652 -103029780 + MLT1A0 LTR MaLR 1 406 -2 2 1303 274 309 12 2 chr1 94166173 94166275 -103029157 + MIR SINE MIR 62 169 -99 2 1303 313 254 130 147 chr1 94167065 94167296 -103028136 + MLT1B LTR MaLR 148 374 -16 2 1303 332 305 43 86 chr1 94167598 94167831 -103027601 + MIRb SINE MIR 20 242 -26 2 1303 180 0 0 0 chr1 94167982 94168002 -103027430 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1303 343 169 338 0 chr1 94169113 94169190 -103026242 - URR1A DNA MER1_type -117 109 7 2 1303 432 344 20 11 chr1 94169288 94169512 -103025920 + GA-rich Low_complexity Low_complexity 1 225 0 2 1303 1014 236 52 112 chr1 94169517 94169866 -103025566 + MTE2a LTR MaLR 1 328 -51 2 1303 262 300 0 14 chr1 94169867 94169938 -103025494 + GA-rich Low_complexity Low_complexity 4 73 0 2 1303 617 0 14 0 chr1 94169957 94170030 -103025402 + (GAGAA)n Simple_repeat Simple_repeat 3 76 0 2 1303 1554 6 0 0 chr1 94170071 94170246 -103025186 + (GGGAGA)n Simple_repeat Simple_repeat 1 175 0 2 1303 252 86 0 0 chr1 94170350 94170385 -103025047 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 2 1303 540 271 107 0 chr1 94170387 94170527 -103024905 - RSINE1 SINE B4 -7 158 4 2 1303 1282 200 45 132 chr1 94171037 94171259 -103024173 - ORR1D1 LTR MaLR 0 374 181 2 1303 723 24 0 0 chr1 94171259 94171344 -103024088 + (TAGG)n Simple_repeat Simple_repeat 2 86 0 2 1303 1282 200 45 132 chr1 94171344 94171501 -103023931 - ORR1D1 LTR MaLR -194 180 28 2 1303 351 0 0 0 chr1 94171763 94171802 -103023630 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1303 376 259 95 95 chr1 94171860 94172018 -103023414 - L1MEe LINE L1 -3921 933 776 2 1303 242 56 28 0 chr1 94172341 94172377 -103023055 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1303 445 344 172 12 chr1 94172407 94172657 -103022775 - B4 SINE B4 0 292 3 2 1303 2036 147 112 0 chr1 94175090 94175430 -103020002 + ORR1C1 LTR MaLR 1 378 0 2 1303 299 222 70 58 chr1 94176305 94176391 -103019041 - MER58A DNA MER1_type -89 135 49 2 1303 681 216 194 18 chr1 94177587 94177872 -103017560 - ORR1E LTR MaLR -7 372 8 2 1303 289 318 34 60 chr1 94178301 94178418 -103017014 - ORR1E LTR MaLR -149 210 97 2 1303 287 309 37 9 chr1 94178464 94178572 -103016860 - ORR1E LTR MaLR -248 111 1 2 1303 325 344 38 46 chr1 94179327 94179458 -103015974 + MLT1A0 LTR MaLR 1 130 -235 2 1303 1000 196 32 37 chr1 94180334 94180551 -103014881 + URR1A DNA MER1_type 8 223 -3 2 1303 261 225 40 17 chr1 94180642 94180818 -103014614 - RMER17D LTR ERVK -375 514 335 2 1303 320 331 51 51 chr1 94182115 94182290 -103013142 - L1M5 LINE L1 -1810 4336 4162 2 1303 23 0 0 0 chr1 94183212 94183235 -103012197 + GC_rich Low_complexity Low_complexity 1 23 0 2 1303 246 197 25 56 chr1 94183604 94183765 -103011667 + (TG)n Simple_repeat Simple_repeat 1 156 0 2 1303 210 71 0 0 chr1 94183810 94183838 -103011594 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2 1303 1188 29 29 0 chr1 94183844 94183981 -103011451 - B1_Mus1 SINE Alu -6 142 2 2 1303 732 54 0 0 chr1 94185833 94185926 -103009506 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 2 1303 501 326 34 0 chr1 94185946 94186124 -103009308 - MLT1B LTR MaLR -206 184 1 2 1303 2394 93 6 6 chr1 94186517 94186843 -103008589 + ORR1A2 LTR MaLR 1 326 -1 2 1303 330 345 48 29 chr1 94186846 94187052 -103008380 + LTR37B LTR ERV1 251 460 -8 2 1303 855 109 0 0 chr1 94187489 94187636 -103007796 + (GA)n Simple_repeat Simple_repeat 1 147 0 2 1303 240 214 0 18 chr1 94188125 94188179 -103007253 - MTE2b LTR MaLR -4 375 323 2 1303 715 208 57 12 chr1 94188179 94188326 -103007106 + B3A SINE B2 1 146 -49 2 1303 528 16 0 0 chr1 94188326 94188387 -103007045 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1303 560 226 96 51 chr1 94188387 94188416 -103007016 + B2_Mm2 SINE B2 147 184 -11 2 1303 629 259 7 20 chr1 94188425 94188575 -103006857 + B1_Mur1 SINE Alu 1 148 -1 2 1303 568 213 90 0 chr1 94188586 94188708 -103006724 - MTE2b LTR MaLR -40 339 207 2 1303 650 301 38 61 chr1 94188770 94188982 -103006450 - MTE2b LTR MaLR -133 246 40 2 1303 1147 245 186 49 chr1 94190445 94190727 -103004705 + MTD LTR MaLR 1 342 -77 2 1303 474 65 0 0 chr1 94190727 94190789 -103004643 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 2 1303 1071 122 0 0 chr1 94190790 94190938 -103004494 - B1_Mus1 SINE Alu 0 148 1 2 1303 1988 68 8 4 chr1 94190948 94191215 -103004217 - L1_Mus3 LINE L1 -5 6633 6366 2 1303 1147 245 186 49 chr1 94191215 94191284 -103004148 + MTD LTR MaLR 348 415 -4 2 1303 353 279 38 9 chr1 94192375 94192480 -103002952 + ID_B1 SINE B4 2 109 -115 2 1303 1015 289 85 11 chr1 94195308 94195591 -102999841 + MTE2b LTR MaLR 1 304 -75 2 1303 499 188 169 27 chr1 94195594 94195742 -102999690 + MTEb LTR MaLR 204 372 -7 2 1303 387 0 0 0 chr1 94196444 94196487 -102998945 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1303 360 314 137 47 chr1 94196791 94197025 -102998407 + RMER20B LTR ERVK 143 397 -119 2 1303 234 62 0 0 chr1 94197934 94197966 -102997466 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1303 345 62 0 0 chr1 94198165 94198213 -102997219 + (GGA)n Simple_repeat Simple_repeat 3 50 0 2 1303 494 269 26 12 chr1 94198703 94199071 -102996361 + (CATA)n Simple_repeat Simple_repeat 1 373 0 2 1303 411 279 42 0 chr1 94198958 94199123 -102996309 + (CATATA)n Simple_repeat Simple_repeat 1 172 0 2 1303 1008 64 0 0 chr1 94200344 94200485 -102994947 + (CAAG)n Simple_repeat Simple_repeat 1 141 0 2 1303 1073 149 71 10 chr1 94201548 94201745 -102993687 - MTD LTR MaLR -14 405 197 2 1303 384 287 47 0 chr1 94201956 94202085 -102993347 + MLT1D LTR MaLR 71 205 -300 2 1303 675 0 0 0 chr1 94202085 94202160 -102993272 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1303 237 178 0 0 chr1 94202502 94202547 -102992885 + CT-rich Low_complexity Low_complexity 1 45 0 2 1303 354 134 0 0 chr1 94202537 94202604 -102992828 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1303 594 161 128 43 chr1 94202606 94202723 -102992709 - B1_Mur3 SINE Alu -22 127 1 2 1303 278 279 100 62 chr1 94202723 94202781 -102992651 - MT2B2 LTR ERVL -416 168 106 2 1303 803 264 116 43 chr1 94202742 94203071 -102992361 - ORR1E LTR MaLR -6 353 1 2 1303 287 292 28 0 chr1 94203071 94203125 -102992307 - ORR1E-int LTR MaLR -53 1527 1472 2 1303 3544 303 78 43 chr1 94203123 94203649 -102991783 - ORR1E-int LTR MaLR -286 1294 738 2 1303 1068 81 0 0 chr1 94203649 94203797 -102991635 + (TTCC)n Simple_repeat Simple_repeat 4 151 0 2 1303 3544 303 78 43 chr1 94203797 94204520 -102990912 - ORR1E-int LTR MaLR -843 737 1 2 1303 598 333 62 59 chr1 94204523 94204861 -102990571 - ORR1E LTR MaLR -2 357 19 2 1303 229 312 19 106 chr1 94205428 94205532 -102989900 - LTR78 LTR ERV1 -353 951 857 2 1303 564 100 428 8 chr1 94205534 94205665 -102989767 - B2_Mm2 SINE B2 -9 186 1 2 1303 300 247 72 24 chr1 94205752 94205835 -102989597 - RSINE1 SINE B4 -44 121 35 2 1303 218 75 0 48 chr1 94205835 94205877 -102989555 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1303 549 295 77 89 chr1 94206954 94207278 -102988154 + MTEa LTR MaLR 6 325 -54 2 1303 306 227 0 0 chr1 94207309 94207384 -102988048 + CT-rich Low_complexity Low_complexity 4 78 0 2 1303 2761 91 63 2 chr1 94207630 94208051 -102987381 + RMER16 LTR ERVK 1 533 0 2 1303 292 329 202 44 chr1 94211119 94211367 -102984065 + MLT1F2 LTR MaLR 270 556 -4 2 1303 334 277 89 0 chr1 94211855 94211956 -102983476 + MLT1E1A LTR MaLR 567 676 -4 2 1303 191 133 22 0 chr1 94212209 94212254 -102983178 + GA-rich Low_complexity Low_complexity 2 47 0 2 1303 198 91 0 0 chr1 94212941 94212974 -102982458 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 2 1303 212 255 43 0 chr1 94214924 94214971 -102980461 - L2c LINE L2 -216 3171 3123 2 1303 404 289 94 113 chr1 94215078 94215343 -102980089 + ORR1E LTR MaLR 98 357 -2 2 1303 15800 144 53 7 chr1 94215343 94215908 -102979524 + L1_Mm LINE L1 2553 3141 -2742 2 1303 330 26 0 0 chr1 94215908 94215947 -102979485 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1303 15800 144 53 7 chr1 94215947 94216388 -102979044 + L1_Mm LINE L1 3142 3643 -2240 2 1303 1158 95 0 0 chr1 94216388 94216536 -102978896 + B1_Mus1 SINE Alu 1 148 0 2 1303 15800 144 53 7 chr1 94216536 94218442 -102976990 + L1_Mm LINE L1 3644 5600 -283 2 1303 195 129 0 0 chr1 94218676 94218707 -102976725 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 2 1303 474 18 0 0 chr1 94218708 94218763 -102976669 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1303 315 0 0 0 chr1 94218774 94218809 -102976623 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1303 468 0 0 0 chr1 94218809 94218860 -102976572 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1303 1286 92 11 28 chr1 94219946 94220124 -102975308 + B2_Mm2 SINE B2 2 176 -19 2 1303 405 0 0 0 chr1 94220190 94220235 -102975197 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1303 258 286 7 0 chr1 94224228 94224311 -102971121 - L1M4c LINE L1 -4711 1785 1626 2 1303 244 267 13 39 chr1 94224417 94224495 -102970937 - MLT1A1 LTR MaLR -20 388 313 2 1303 808 106 36 3 chr1 94224842 94225152 -102970280 + (TAGA)n Simple_repeat Simple_repeat 1 320 0 2 1303 1183 51 0 0 chr1 94225215 94225352 -102970080 + B1_Mus2 SINE Alu 2 138 -9 2 1303 374 0 0 21 chr1 94225352 94225399 -102970033 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1303 953 114 57 0 chr1 94225610 94225750 -102969682 - B1_Mus1 SINE Alu 0 148 1 3 1303 1166 42 0 40 chr1 94225870 94226019 -102969413 - B1_Mm SINE Alu 0 147 5 3 1303 253 380 7 0 chr1 94226455 94226592 -102968840 + L1M5 LINE L1 5579 5716 -408 3 1303 251 186 14 0 chr1 94227429 94227453 -102967979 + polypurine Low_complexity Low_complexity 1 24 0 3 1303 1434 45 0 0 chr1 94227453 94227631 -102967801 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 3 1303 251 186 14 0 chr1 94227631 94227676 -102967756 + GA-rich Low_complexity Low_complexity 25 70 0 3 1303 352 326 108 24 chr1 94228198 94228449 -102966983 + B4 SINE B4 3 274 -18 3 1303 186 291 82 98 chr1 94228674 94228796 -102966636 + MIRm SINE MIR 57 176 -100 3 1303 312 27 0 0 chr1 94229948 94229985 -102965447 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1303 677 218 27 13 chr1 94230510 94230659 -102964773 + ORR1C2 LTR MaLR 192 342 -42 3 1303 754 259 70 82 chr1 94230746 94230905 -102964527 + ORR1D1 LTR MaLR 7 172 -202 3 1303 399 21 0 0 chr1 94230905 94230953 -102964479 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 3 1303 495 0 0 0 chr1 94230963 94231018 -102964414 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 3 1303 754 259 70 82 chr1 94231018 94231104 -102964328 + ORR1D1 LTR MaLR 181 260 -114 3 1303 503 238 10 10 chr1 94231126 94231228 -102964204 + PB1D10 SINE Alu 13 114 -3 3 1303 279 0 0 0 chr1 94231335 94231366 -102964066 + (CCA)n Simple_repeat Simple_repeat 1 31 0 3 1303 294 287 143 5 chr1 94232112 94232315 -102963117 - L1MD2 LINE L1 -388 5971 5741 3 1303 661 326 10 0 chr1 94233420 94233616 -102961816 + B3A SINE B2 1 198 0 3 1303 811 218 73 17 chr1 94233655 94233832 -102961600 - B3A SINE B2 -11 187 1 3 1303 25 51 0 0 chr1 94233865 94233904 -102961528 + AT_rich Low_complexity Low_complexity 1 39 0 3 1303 872 310 84 7 chr1 94234086 94234515 -102960917 - Charlie1a DNA MER1_type -15 1440 979 3 1303 407 305 163 35 chr1 94234660 94234918 -102960514 - B4A SINE B4 0 292 2 3 1303 627 306 131 19 chr1 94235076 94235505 -102959927 - L1M3 LINE L1 -410 5779 5303 3 1303 442 271 25 8 chr1 94236002 94236121 -102959311 - ORR1E LTR MaLR -238 121 1 3 1303 431 211 27 10 chr1 94237193 94237306 -102958126 - B1F2 SINE Alu 0 120 1 3 1303 225 258 105 32 chr1 94237354 94237478 -102957954 - L1MC LINE L1 -3724 2422 2290 3 1303 305 303 62 27 chr1 94238967 94239079 -102956353 + MER65D LTR ERV1 251 366 -107 3 1304 783 120 355 18 chr1 94242285 94242454 -102952978 + URR1A DNA MER1_type 1 226 0 3 1304 1578 248 21 19 chr1 94242717 94243091 -102952341 + MTEb LTR MaLR 3 377 -2 3 1304 1377 147 4 30 chr1 94244087 94244318 -102951114 - URR1B DNA MER1_type 0 225 1 3 1304 489 301 8 8 chr1 94245002 94245136 -102950296 - RSINE1 SINE B4 -28 137 4 3 1304 1817 148 54 127 chr1 94245561 94245948 -102949484 + ORR1B2 LTR MaLR 1 359 -8 3 1304 342 287 18 12 chr1 94245997 94246102 -102949330 + MTEb LTR MaLR 283 419 0 3 1304 535 334 57 44 chr1 94246136 94246264 -102949168 - L1M4 LINE L1 -400 5784 5672 3 1304 976 223 24 19 chr1 94246264 94246474 -102948958 - B3 SINE B2 -1 215 5 3 1304 535 334 57 44 chr1 94246474 94246868 -102948564 - L1M4 LINE L1 -513 5671 5255 3 1304 382 308 20 27 chr1 94246920 94247070 -102948362 + B1F SINE Alu 1 149 0 3 1304 225 296 12 12 chr1 94247077 94247159 -102948273 + ID4_ SINE ID 1 82 -1 3 1304 335 343 93 9 chr1 94247508 94247723 -102947709 - MLT2C1 LTR ERVL -138 259 27 3 1304 242 282 105 15 chr1 94247740 94247873 -102947559 - L1M4 LINE L1 -1607 4539 4395 3 1304 1578 205 32 109 chr1 94248570 94248780 -102946652 + MTE2a LTR MaLR 1 191 -188 3 1304 3556 15 5 0 chr1 94248780 94249174 -102946258 + MTA_Mm LTR MaLR 1 396 0 3 1304 9449 24 5 1 chr1 94249174 94250266 -102945166 + MTA_Mm-int LTR MaLR 1 1096 -2 3 1304 3556 15 5 0 chr1 94250268 94250662 -102944770 + MTA_Mm LTR MaLR 1 396 0 3 1304 1578 205 32 109 chr1 94250662 94250858 -102944574 + MTE2a LTR MaLR 192 378 -1 3 1304 527 139 0 9 chr1 94252275 94252391 -102943041 + (TG)n Simple_repeat Simple_repeat 2 116 0 3 1304 315 0 0 0 chr1 94254876 94254911 -102940521 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1304 402 191 0 0 chr1 94258132 94258258 -102937174 + (CA)n Simple_repeat Simple_repeat 1 126 0 3 1304 446 293 21 7 chr1 94258425 94258566 -102936866 - LTR85c LTR Gypsy? -602 221 79 3 1304 823 288 131 8 chr1 94258920 94259165 -102936267 + B4 SINE B4 8 282 -10 3 1304 255 170 0 0 chr1 94259179 94259226 -102936206 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1304 311 282 23 68 chr1 94259304 94259437 -102935995 + L1M5 LINE L1 5672 5798 -364 3 1304 844 257 23 83 chr1 94260624 94260925 -102934507 - B4A SINE B4 -9 283 1 3 1304 261 365 26 0 chr1 94263414 94263529 -102931903 - MIRb SINE MIR -39 229 112 3 1304 2458 78 3 0 chr1 94263632 94263951 -102931481 - ORR1A2 LTR MaLR -7 320 1 3 1304 284 240 10 0 chr1 94264320 94264420 -102931012 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 3 1304 408 324 12 17 chr1 94264464 94264637 -102930795 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 3 1304 333 265 14 28 chr1 94264679 94265130 -102930302 + (TGGA)n Simple_repeat Simple_repeat 1 444 0 3 1304 611 319 18 0 chr1 94265177 94265346 -102930086 + MLT1D LTR MaLR 247 418 -87 3 1304 3395 148 86 5 chr1 94265392 94265982 -102929450 - RMER1A Other Other -20 1010 373 3 1304 290 286 75 16 chr1 94266628 94266786 -102928646 - MLT1B LTR MaLR -223 244 73 3 1304 491 128 0 11 chr1 94267189 94267276 -102928156 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 3 1304 427 289 161 12 chr1 94269633 94269801 -102925631 + RMER15 LTR ERVL 310 502 -73 3 1304 3249 39 28 3 chr1 94270019 94270408 -102925024 + MTB LTR MaLR 2 400 0 3 1304 243 61 0 0 chr1 94270448 94270481 -102924951 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1304 1190 246 116 6 chr1 94270861 94271172 -102924260 - MTEb LTR MaLR -34 345 1 3 1304 822 286 17 80 chr1 94271221 94271521 -102923911 + B4A SINE B4 2 282 -10 3 1304 279 0 0 0 chr1 94271600 94271631 -102923801 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1304 375 314 149 67 chr1 94271784 94272200 -102923232 + Arthur1 DNA Tip100 3413 3862 -85 3 1304 297 0 0 0 chr1 94272284 94272317 -102923115 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1304 504 255 238 17 chr1 94272603 94272823 -102922609 - B4A SINE B4 -20 272 4 3 1304 254 307 48 29 chr1 94273210 94273314 -102922118 - MLT1G1 LTR MaLR -2 577 472 3 1304 568 283 90 77 chr1 94273645 94273955 -102921477 - ORR1E LTR MaLR -39 320 7 3 1304 4030 292 94 34 chr1 94273936 94275115 -102920317 - ORR1E-int LTR MaLR -28 1552 321 3 1304 1334 73 50 0 chr1 94275115 94275294 -102920138 + B2_Mm2 SINE B2 1 188 -7 3 1304 4030 292 94 34 chr1 94275294 94275578 -102919854 - ORR1E-int LTR MaLR -1260 320 2 3 1304 690 294 58 86 chr1 94275582 94275943 -102919489 - ORR1E LTR MaLR -1 358 8 3 1304 483 63 0 0 chr1 94276485 94276548 -102918884 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 3 1304 1167 108 54 5 chr1 94276550 94276736 -102918696 - B2_Mm2 SINE B2 0 195 1 3 1304 245 224 55 66 chr1 94277919 94278010 -102917422 + RMER17B LTR ERVK 56 145 -813 3 1304 776 185 436 0 chr1 94278435 94278701 -102916731 - MTD LTR MaLR 0 419 37 3 1304 308 238 48 0 chr1 94279021 94279105 -102916327 + BLACKJACK DNA AcHobo 873 960 -1984 3 1304 840 284 54 65 chr1 94279121 94279204 -102916228 + B4 SINE B4 2 96 -196 3 1304 985 232 15 15 chr1 94279204 94279410 -102916022 + B3 SINE B2 1 206 -10 3 1304 204 40 0 0 chr1 94279411 94279436 -102915996 + (TAAG)n Simple_repeat Simple_repeat 1 25 0 3 1304 840 284 54 65 chr1 94279436 94279644 -102915788 + B4 SINE B4 97 292 0 3 1304 240 122 0 0 chr1 94279645 94279686 -102915746 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1304 404 339 80 67 chr1 94279712 94280025 -102915407 + BLACKJACK DNA AcHobo 996 1312 -1632 3 1304 183 129 0 0 chr1 94280287 94280318 -102915114 + (TATG)n Simple_repeat Simple_repeat 1 31 0 3 1304 283 357 106 63 chr1 94280402 94280443 -102914989 - MLT2B1 LTR ERVL -197 323 280 3 1304 180 0 0 0 chr1 94280443 94280463 -102914969 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 3 1304 283 357 106 63 chr1 94280463 94280705 -102914727 - MLT2B1 LTR ERVL -241 279 28 3 1304 290 24 48 0 chr1 94280728 94280770 -102914662 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 3 1304 494 274 223 11 chr1 94280778 94281047 -102914385 + BLACKJACK DNA AcHobo 1637 1962 -982 3 1304 440 365 51 35 chr1 94281307 94281619 -102913813 + L1MEg LINE L1 645 961 -5123 3 1304 324 158 0 0 chr1 94281619 94281676 -102913756 + G-rich Low_complexity Low_complexity 2 58 0 3 1304 609 232 16 8 chr1 94281831 94281957 -102913475 + RSINE1 SINE B4 8 134 -31 3 1304 348 43 0 0 chr1 94281963 94282009 -102913423 + (TCTCTG)n Simple_repeat Simple_repeat 4 49 0 3 1304 1634 31 5 10 chr1 94282126 94282320 -102913112 + B2_Mm1t SINE B2 1 193 0 3 1304 902 308 83 39 chr1 94282431 94282890 -102912542 - LTR16B1 LTR ERVL 0 480 2 3 1304 313 296 49 39 chr1 94283025 94283127 -102912305 + PB1D10 SINE Alu 3 105 -12 3 1304 198 0 0 0 chr1 94283133 94283155 -102912277 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 3 1304 269 139 241 0 chr1 94283211 94283290 -102912142 + L1MEc LINE L1 2237 2334 -4066 3 1304 1622 262 31 5 chr1 94283291 94283716 -102911716 + BLACKJACK DNA AcHobo 1985 2420 -524 3 1304 456 246 103 32 chr1 94283906 94284026 -102911406 + B1_Mur4 SINE Alu 11 141 -9 3 1304 180 0 0 0 chr1 94284026 94284046 -102911386 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 3 1304 266 243 0 79 chr1 94285973 94286049 -102909383 - ID SINE ID -150 74 5 3 1304 304 328 19 87 chr1 94286147 94286354 -102909078 - L1MEg LINE L1 -4145 1939 1747 3 1304 405 0 0 0 chr1 94286466 94286511 -102908921 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1304 808 283 20 86 chr1 94286514 94286816 -102908616 + B4A SINE B4 11 292 0 3 1304 314 298 23 35 chr1 94286821 94286995 -102908437 + (CATA)n Simple_repeat Simple_repeat 2 173 0 3 1304 511 301 41 19 chr1 94287042 94287309 -102908123 - L1MEg LINE L1 -4544 1540 1268 3 1304 609 374 60 24 chr1 94287474 94288001 -102907431 - L1MB3 LINE L1 -198 5985 5453 3 1304 414 0 0 0 chr1 94288009 94288055 -102907377 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1304 1569 199 135 6 chr1 94288189 94288498 -102906934 + MTD LTR MaLR 10 351 -68 3 1304 189 0 0 0 chr1 94288498 94288519 -102906913 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 3 1304 1569 199 135 6 chr1 94288519 94288572 -102906860 + MTD LTR MaLR 352 418 -1 3 1304 669 243 41 7 chr1 94288751 94288896 -102906536 - RSINE1 SINE B4 -14 151 2 4 1304 709 281 36 0 chr1 94288940 94289107 -102906325 - B3 SINE B2 -40 176 4 4 1304 274 211 17 34 chr1 94289521 94289580 -102905852 + RSINE1 SINE B4 3 60 -105 4 1304 393 22 0 0 chr1 94289594 94289640 -102905792 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1304 2037 146 52 3 chr1 94290430 94290760 -102904672 - ORR1A1 LTR MaLR 0 346 1 4 1304 254 164 53 35 chr1 94292677 94292734 -102902698 + ORR1E LTR MaLR 1 58 -301 4 1304 308 239 34 0 chr1 94292738 94292862 -102902570 + ORR1E LTR MaLR 26 222 -137 4 1304 816 270 29 48 chr1 94293003 94293209 -102902223 + B4A SINE B4 91 292 0 4 1304 319 275 0 23 chr1 94293264 94293435 -102901997 + (CATA)n Simple_repeat Simple_repeat 4 170 0 4 1304 211 218 18 35 chr1 94293887 94293944 -102901488 + MIR SINE MIR 93 148 -60 4 1304 430 272 17 17 chr1 94296077 94296193 -102899239 - PB1D10 SINE Alu -1 116 1 4 1304 272 48 24 0 chr1 94296267 94296309 -102899123 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1304 1101 95 0 7 chr1 94296309 94296447 -102898985 - B1_Mus1 SINE Alu -10 138 1 4 1304 207 0 0 0 chr1 94296770 94296793 -102898639 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1304 287 0 53 0 chr1 94296944 94296982 -102898450 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 4 1304 358 227 17 22 chr1 94297726 94297906 -102897526 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 4 1304 1882 121 77 3 chr1 94298008 94298307 -102897125 + ORR1A3 LTR MaLR 1 321 -5 4 1304 257 257 137 10 chr1 94298946 94299048 -102896384 - MER5A1 DNA MER1_type -36 130 16 4 1304 324 0 0 0 chr1 94300805 94300841 -102894591 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1304 260 343 38 27 chr1 94300990 94301140 -102894292 - MIRb SINE MIR -105 171 23 4 1304 22 35 0 0 chr1 94302162 94302191 -102893241 + AT_rich Low_complexity Low_complexity 1 29 0 4 1304 274 299 45 11 chr1 94302435 94302523 -102892909 - RMER15 LTR ERVL -43 532 442 4 1304 289 286 110 124 chr1 94303198 94303497 -102891935 - ORR1E LTR MaLR -5 354 60 4 1304 549 196 34 42 chr1 94303536 94303684 -102891748 - MTC LTR MaLR -245 151 1 4 1304 2831 87 40 20 chr1 94303989 94304388 -102891044 - MTB_Mm LTR MaLR 0 407 1 4 1304 446 204 100 18 chr1 94304409 94304519 -102890913 - ID_B1 SINE B4 -20 204 86 4 1304 416 210 43 21 chr1 94304711 94304852 -102890580 + RMER17B LTR ERVK 316 459 -499 4 1304 243 196 0 0 chr1 94304852 94304898 -102890534 + A-rich Low_complexity Low_complexity 1 46 0 4 1304 253 284 101 93 chr1 94304898 94305146 -102890286 - ORR1D1 LTR MaLR -43 331 82 4 1304 952 228 28 77 chr1 94305239 94305591 -102889841 + RLTR15 LTR ERVK 10 344 -15 4 1304 287 344 159 43 chr1 94305729 94306081 -102889351 - L2a LINE L2 -11 3415 3023 4 1304 580 300 103 9 chr1 94308331 94308563 -102886869 - Lx8 LINE L1 -2 7471 7218 4 1304 1141 125 0 6 chr1 94308625 94308794 -102886638 - MT2B LTR ERVL -338 263 96 4 1304 39848 9 1 5 chr1 94308800 94315143 -102880289 - L1Md_A LINE L1 0 6582 269 4 1304 751 164 30 7 chr1 94315143 94315278 -102880154 - MT2B LTR ERVL -463 138 1 4 1304 682 164 16 32 chr1 94315292 94315418 -102880014 + RLTR18B LTR ERVK 2 125 -387 4 1304 1400 209 116 32 chr1 94315418 94315844 -102879588 + RMER4B LTR ERVK 1 555 -56 4 1304 295 198 24 12 chr1 94315842 94315924 -102879508 + 4.5SRNA scRNA scRNA 4 86 -8 4 1304 853 19 0 9 chr1 94315875 94315983 -102879449 + B1_Mm SINE Alu 41 147 0 4 1304 1100 180 10 10 chr1 94316031 94316227 -102879205 + RLTR18B LTR ERVK 120 315 -197 4 1304 1358 157 19 0 chr1 94316246 94316456 -102878976 + RLTR18B LTR ERVK 290 503 -9 4 1304 3072 47 63 0 chr1 94316759 94317142 -102878290 - MTB_Mm LTR MaLR 0 407 1 4 1304 641 303 106 15 chr1 94317427 94317826 -102877606 + L1MDa LINE L1 816 1266 -5274 4 1304 1839 176 59 6 chr1 94318265 94318620 -102876812 + ORR1D1 LTR MaLR 1 374 0 4 1304 318 206 26 121 chr1 94318654 94318770 -102876662 + L1MDa LINE L1 3288 3392 -3145 4 1304 438 20 0 0 chr1 94318776 94318827 -102876605 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1304 312 281 0 30 chr1 94318871 94318937 -102876495 + ID4 SINE ID 12 75 -8 4 1304 225 235 44 0 chr1 94318937 94319005 -102876427 + GA-rich Low_complexity Low_complexity 2 72 0 4 1304 940 241 15 5 chr1 94319239 94319435 -102875997 + B3 SINE B2 5 202 -14 4 1304 321 321 64 21 chr1 94319530 94319670 -102875762 + L1MD LINE L1 2464 2609 -3537 4 1304 300 241 110 17 chr1 94319917 94320035 -102875397 + L1MD LINE L1 3068 3196 -2950 4 1304 544 312 102 45 chr1 94320279 94320524 -102874908 + MTEa LTR MaLR 79 337 -42 4 1304 1209 49 0 0 chr1 94323781 94323923 -102871509 + B1_Mm SINE Alu 1 142 -5 4 1304 777 199 0 0 chr1 94323923 94324089 -102871343 + GA-rich Low_complexity Low_complexity 3 168 0 4 1304 1043 107 0 22 chr1 94324089 94324271 -102871161 + (GGA)n Simple_repeat Simple_repeat 2 179 0 4 1304 252 339 65 0 chr1 94324277 94324401 -102871031 - MLT1E2 LTR MaLR -178 449 318 4 1304 359 258 0 0 chr1 94324537 94324618 -102870814 - ID4_ SINE ID -61 91 11 4 1304 1304 27 0 0 chr1 94324814 94324961 -102870471 - B1_Mus1 SINE Alu 0 148 2 4 1304 2431 63 9 0 chr1 94326180 94326496 -102868936 + ORR1A2 LTR MaLR 1 319 -8 4 1304 269 372 0 15 chr1 94326696 94326827 -102868605 + CT-rich Low_complexity Low_complexity 3 131 0 4 1304 2388 128 39 15 chr1 94327676 94328065 -102867367 + RMER10B LTR ERVL 1 398 0 4 1304 1088 236 135 69 chr1 94328494 94328917 -102866515 - RLTR12B LTR ERVK -31 497 47 4 1304 1233 254 38 105 chr1 94329322 94329756 -102865676 - RLTR20B3 LTR ERVK -80 497 81 4 1304 1198 61 0 0 chr1 94329756 94329903 -102865529 - B1_Mus1 SINE Alu 0 148 2 4 1304 1233 254 38 105 chr1 94329903 94330001 -102865431 - RLTR20B3 LTR ERVK -497 80 1 4 1304 1178 81 0 0 chr1 94330037 94330185 -102865247 + B1_Mus1 SINE Alu 1 148 0 4 1304 243 0 0 0 chr1 94330185 94330212 -102865220 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1304 654 269 48 0 chr1 94330807 94330974 -102864458 - MTEb LTR MaLR 0 379 205 4 1304 182 224 82 0 chr1 94332238 94332287 -102863145 + L2b LINE L2 3085 3137 -238 4 1304 905 145 0 14 chr1 94332338 94332478 -102862954 + B1_Mus1 SINE Alu 10 147 -1 4 1304 321 26 0 0 chr1 94333595 94333633 -102861799 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1304 418 307 41 18 chr1 94335483 94335652 -102859780 + MER3 DNA MER1_type 20 192 -17 4 1304 2382 233 38 26 chr1 94336854 94337427 -102858005 - RMER1A Other Other -277 753 174 4 1304 1363 124 108 4 chr1 94337427 94337677 -102857755 + RMER1A Other Other 755 1030 0 4 1304 222 37 0 0 chr1 94338017 94338044 -102857388 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1304 354 325 147 55 chr1 94340461 94340787 -102854645 + L1MEf LINE L1 554 909 -5185 4 1304 1200 29 0 0 chr1 94340788 94340926 -102854506 + B1_Mus1 SINE Alu 2 139 -9 4 1304 528 294 94 32 chr1 94341460 94341832 -102853600 + L1MEf LINE L1 1149 1543 -4657 4 1304 2150 251 66 38 chr1 94342250 94343042 -102852390 - Lx8 LINE L1 -1664 5980 5133 4 1304 2503 288 103 14 chr1 94343029 94343428 -102852004 + Lx8 LINE L1 6246 6693 -780 4 1304 306 0 0 0 chr1 94343428 94343462 -102851970 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1304 2503 288 103 14 chr1 94343462 94343956 -102851476 + Lx8 LINE L1 6694 7218 -255 4 1304 379 238 142 146 chr1 94344259 94344589 -102850843 + MTEb LTR MaLR 49 377 -2 4 1304 2031 142 133 6 chr1 94345981 94346342 -102849090 - MTD LTR MaLR -8 411 5 4 1304 33 43 0 0 chr1 94346786 94346833 -102848599 + AT_rich Low_complexity Low_complexity 1 47 0 4 1304 377 346 54 34 chr1 94347069 94347365 -102848067 + L1MEg LINE L1 1613 1914 -4170 4 1304 769 183 234 0 chr1 94348782 94348957 -102846475 + B3 SINE B2 1 216 0 4 1304 387 261 43 21 chr1 94349530 94349624 -102845808 + B1F SINE Alu 3 98 -51 4 1304 200 79 0 50 chr1 94351178 94351218 -102844214 + (TGGGGG)n Simple_repeat Simple_repeat 5 42 0 4 1304 2646 241 116 79 chr1 94352254 94353174 -102842258 - ORR1D-int LTR MaLR -412 958 5 4 1304 851 194 100 0 chr1 94353175 94353355 -102842077 - ERVL-int LTR ERVL -860 4897 4700 4 1304 721 214 55 25 chr1 94353338 94353501 -102841931 + MERVL_2A-int LTR ERVL 3813 3980 -1781 4 1304 689 225 0 0 chr1 94353505 94353634 -102841798 + MT2A LTR ERVL 170 298 -235 4 1304 1176 68 62 0 chr1 94353643 94353804 -102841628 + B2_Mm1t SINE B2 1 171 -22 4 1304 275 125 395 28 chr1 94353821 94353930 -102841502 + B2_Mm2 SINE B2 47 195 0 4 1304 233 299 0 0 chr1 94353910 94353977 -102841455 + MT2A LTR ERVL 287 353 -180 4 1304 408 40 0 0 chr1 94354061 94354111 -102841321 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1304 279 0 0 0 chr1 94354374 94354405 -102841027 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 1304 364 294 185 27 chr1 94354762 94355460 -102839972 + L1MC LINE L1 2141 2948 -3198 4 1304 625 270 153 31 chr1 94355804 94356026 -102839406 - B4A SINE B4 0 292 44 4 1304 189 299 119 18 chr1 94356642 94356751 -102838681 + L2a LINE L2 3286 3405 -21 4 1304 710 236 7 0 chr1 94357836 94357980 -102837452 - B1F2 SINE Alu -4 145 1 4 1304 443 198 12 0 chr1 94358069 94358150 -102837282 - B1F SINE Alu 0 149 68 4 1304 335 338 27 20 chr1 94360281 94360429 -102835003 + RSINE1 SINE B4 3 151 -14 4 1304 226 323 56 63 chr1 94365405 94365547 -102829885 + MER5A DNA MER1_type 1 141 -48 4 1304 613 282 0 21 chr1 94367127 94367272 -102828160 - B1F1 SINE Alu -1 148 7 4 1304 204 200 0 0 chr1 94367760 94367805 -102827627 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 4 1304 1215 61 0 0 chr1 94368612 94368759 -102826673 - B1_Mus2 SINE Alu 0 147 1 4 1304 394 182 121 33 chr1 94368760 94368910 -102826522 + L1MC3 LINE L1 5686 5859 -1926 4 1304 646 167 110 8 chr1 94368940 94369067 -102826365 - B1_Mur1 SINE Alu -9 140 1 4 1304 291 54 0 0 chr1 94369086 94369123 -102826309 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1304 519 284 173 28 chr1 94369228 94369616 -102825816 + L1MC3 LINE L1 5908 6351 -1434 4 1304 452 269 227 30 chr1 94371323 94371794 -102823638 + L1MC LINE L1 3487 4050 -2096 5 20 1103 110 6 6 chr1 94371795 94371968 -102823464 + B2_Mm1t SINE B2 20 192 -1 5 1305 1243 300 99 42 chr1 94371968 94372210 -102823222 + L1MD LINE L1 4083 4319 -1827 5 1305 333 0 0 0 chr1 94372210 94372247 -102823185 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1305 351 0 0 0 chr1 94372247 94372285 -102823147 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1305 1243 300 99 42 chr1 94372285 94373027 -102822405 + L1MD LINE L1 4320 5117 -1029 5 1305 847 27 0 18 chr1 94373027 94373139 -102822293 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 5 1305 1243 300 99 42 chr1 94373139 94373295 -102822137 + L1MD LINE L1 5118 5288 -858 5 1305 226 277 34 59 chr1 94373498 94373617 -102821815 + RLTR1C LTR ERV1 195 310 -193 5 1305 352 265 0 33 chr1 94373928 94374049 -102821383 + L1ME3A LINE L1 4537 4653 -1493 5 1305 3190 60 0 63 chr1 94374266 94374691 -102820741 + MTB LTR MaLR 3 400 0 5 1305 324 288 181 41 chr1 94375150 94375676 -102819756 + L1ME3A LINE L1 5037 5635 -538 5 1305 247 309 78 6 chr1 94375893 94376059 -102819373 + L1ME3A LINE L1 5833 6010 -163 5 1305 1041 134 24 0 chr1 94377948 94378112 -102817320 + URR1A DNA MER1_type 59 226 0 5 1305 4177 72 0 4 chr1 94379466 94379996 -102815436 - L1_Mus1 LINE L1 0 6567 6040 5 1305 349 333 53 20 chr1 94380434 94380584 -102814848 + MLT1C LTR MaLR 301 455 -12 5 1305 342 0 0 0 chr1 94380712 94380750 -102814682 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1305 2911 259 66 73 chr1 94382014 94382646 -102812786 + RCHARR1 DNA MER1_type 57 732 -242 5 1305 997 99 43 0 chr1 94382646 94382787 -102812645 + B1_Mus1 SINE Alu 2 148 0 5 1305 2911 259 66 73 chr1 94382787 94383077 -102812355 + RCHARR1 DNA MER1_type 733 973 -1 5 1305 277 219 163 20 chr1 94383700 94383798 -102811634 + MER57A-int LTR ERV1 3751 3862 -2325 5 1305 2703 77 28 17 chr1 94383802 94384157 -102811275 - RLTR10D LTR ERVK 0 359 1 5 1305 5673 105 53 15 chr1 94384157 94384972 -102810460 - IAP-d-int LTR ERVK 0 6542 5697 5 1305 1929 195 34 3 chr1 94384954 94385309 -102810123 - IAP-d-int LTR ERVK -1170 5372 5007 5 1305 777 223 0 0 chr1 94385309 94385466 -102809966 - IAP-d-int LTR ERVK -6039 503 347 5 1305 1055 97 10 151 chr1 94385460 94385666 -102809766 - IAP-d-int LTR ERVK -6365 177 1 5 1305 2606 87 29 14 chr1 94385671 94386021 -102809411 - RLTR10D LTR ERVK -4 355 1 5 1305 1377 234 45 112 chr1 94386214 94386614 -102808818 + MTE2a LTR MaLR 7 379 0 5 1305 319 338 14 0 chr1 94386644 94386789 -102808643 + L1M5 LINE L1 5455 5601 -572 5 1305 294 125 0 0 chr1 94388977 94389025 -102806407 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1305 186 43 0 0 chr1 94392682 94392705 -102802727 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1305 1511 268 45 108 chr1 94393841 94394332 -102801100 - L1_Mur3 LINE L1 -490 5390 4916 5 1305 1030 101 0 0 chr1 94394332 94394471 -102800961 - B1_Mus1 SINE Alu -8 140 2 5 1305 1511 268 45 108 chr1 94394471 94394901 -102800531 - L1_Mur3 LINE L1 -965 4915 4528 5 1305 923 266 49 118 chr1 94394902 94395307 -102800125 + MTE2b LTR MaLR 1 377 -2 5 1305 261 0 0 0 chr1 94395347 94395376 -102800056 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1305 1416 269 120 63 chr1 94395437 94396279 -102799153 - L1_Rod LINE L1 -3291 2556 1667 5 1305 2835 61 3 0 chr1 94396281 94396626 -102798806 + ORR1A1 LTR MaLR 1 346 0 5 1305 13695 64 10 1 chr1 94396626 94398402 -102797030 + ORR1A1-int LTR MaLR 1 1792 0 5 1305 2459 40 37 0 chr1 94398402 94398728 -102796704 + ORR1A1 LTR MaLR 1 338 -8 5 1305 501 286 68 28 chr1 94398745 94399097 -102796335 - L1_Mur3 LINE L1 -4230 1650 1285 5 1305 910 104 55 0 chr1 94399201 94399364 -102796068 + RMER4B LTR ERVK 1 172 -413 5 1305 1126 202 91 23 chr1 94399391 94399655 -102795777 + RMER4B LTR ERVK 304 585 0 5 1305 3746 195 61 4 chr1 94399655 94400390 -102795042 + MurERV4-int LTR ERVK 1 777 -4483 5 1305 21 36 0 0 chr1 94400390 94400418 -102795014 + AT_rich Low_complexity Low_complexity 1 28 0 5 1305 1133 112 0 0 chr1 94400438 94400608 -102794824 + B2_Mm2 SINE B2 2 171 -24 5 1305 4061 132 21 12 chr1 94400676 94401074 -102794358 + MurERV4-int LTR ERVK 757 1152 -4108 5 1305 234 0 0 0 chr1 94401074 94401100 -102794332 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1305 4061 132 21 12 chr1 94401100 94401351 -102794081 + MurERV4-int LTR ERVK 1153 1411 -3849 5 1305 773 171 0 8 chr1 94401348 94401478 -102793954 + MurERV4-int LTR ERVK 5124 5252 -8 5 1305 2663 162 42 38 chr1 94401482 94402059 -102793373 + RMER4B LTR ERVK 1 579 -6 5 1305 2828 94 5 0 chr1 94402342 94402734 -102792698 + L1_Mus2 LINE L1 6173 6566 0 5 1305 704 267 69 4 chr1 94402902 94403135 -102792297 + RCHARR1 DNA MER1_type 727 974 0 5 1305 332 296 71 24 chr1 94403774 94403985 -102791447 + MER57-int LTR ERV1 5471 5691 -1846 5 1305 280 311 49 32 chr1 94404051 94404174 -102791258 + MER57A-int LTR ERV1 4093 4217 -1970 5 1305 637 276 118 85 chr1 94404283 94404850 -102790582 + MER57A-int LTR ERV1 4273 4858 -1329 5 1305 463 325 0 0 chr1 94405876 94405993 -102789439 + ID_B1 SINE B4 82 198 -26 5 1305 318 106 0 0 chr1 94405994 94406041 -102789391 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 5 1305 550 281 28 100 chr1 94406375 94406624 -102788808 - MTEb LTR MaLR 0 379 149 5 1305 229 229 0 116 chr1 94410091 94410160 -102785272 + ORR1E LTR MaLR 6 66 -293 5 1305 309 192 178 0 chr1 94410271 94410344 -102785088 + MTEa LTR MaLR 294 379 0 5 1305 360 0 0 0 chr1 94410424 94410464 -102784968 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1305 216 0 0 0 chr1 94410464 94410488 -102784944 + (CAT)n Simple_repeat Simple_repeat 3 26 0 5 1305 429 20 0 0 chr1 94411281 94411331 -102784101 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1305 333 0 0 0 chr1 94411527 94411564 -102783868 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 1305 207 0 0 0 chr1 94412473 94412496 -102782936 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1305 401 0 20 0 chr1 94414546 94414595 -102780837 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1305 305 248 112 71 chr1 94415708 94415924 -102779508 + L1MD LINE L1 5402 5626 -733 5 1305 23 0 0 0 chr1 94416429 94416452 -102778980 + AT_rich Low_complexity Low_complexity 1 23 0 5 1305 261 0 0 0 chr1 94416473 94416502 -102778930 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1305 829 320 42 13 chr1 94416710 94417087 -102778345 - Lx8 LINE L1 -242 7231 6844 5 1305 276 205 129 76 chr1 94417116 94417248 -102778184 - MLT1A1 LTR MaLR 0 408 270 5 1305 207 0 0 0 chr1 94418013 94418036 -102777396 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1305 2808 120 59 68 chr1 94419350 94419877 -102775555 + RLTR28 LTR ERVL 3 524 0 5 1305 745 238 83 59 chr1 94420717 94421009 -102774423 + RLTR11A2 LTR ERVK 1 278 -163 5 1305 303 175 0 0 chr1 94421009 94421066 -102774366 + GA-rich Low_complexity Low_complexity 2 58 0 5 1305 504 311 25 25 chr1 94421067 94421308 -102774124 + RLTR11A2 LTR ERVK 214 454 -74 5 1305 988 264 96 55 chr1 94421606 94422116 -102773316 + MYSERV16_I-int LTR ERVK 236 766 -1560 5 1305 2859 23 2 190 chr1 94423165 94423643 -102771789 + RLTR10 LTR ERVK 1 388 -2 5 1305 16401 27 3 41 chr1 94423655 94425674 -102769758 + RLTR10-int LTR ERVK 41 1984 -3 5 1305 2859 23 2 190 chr1 94425676 94426154 -102769278 + RLTR10 LTR ERVK 1 388 -2 5 1305 327 302 70 5 chr1 94426924 94427099 -102768333 + MLT1D LTR MaLR 5 187 -440 5 1305 201 234 0 0 chr1 94427168 94427232 -102768200 + (CAA)n Simple_repeat Simple_repeat 2 65 0 5 1305 1528 191 134 6 chr1 94427255 94427614 -102767818 - MTD LTR MaLR -14 405 1 5 1305 466 208 0 0 chr1 94427614 94427715 -102767717 - MTD-int LTR MaLR 0 1258 1158 5 1305 3544 187 99 43 chr1 94427765 94428873 -102766559 + RMER12 LTR ERVK 1 1699 -149 5 1305 7323 123 53 13 chr1 94428998 94430621 -102764811 + L1_Mur2 LINE L1 3654 5877 -9 5 1305 1866 223 27 24 chr1 94430617 94431081 -102764351 + Lx2B LINE L1 6498 7009 0 5 1305 233 350 24 64 chr1 94431100 94431225 -102764207 + Lx8 LINE L1 7146 7265 -208 5 1305 664 141 15 15 chr1 94431993 94432123 -102763309 + CT-rich Low_complexity Low_complexity 3 132 0 5 1305 1419 98 16 12 chr1 94432172 94432419 -102763013 + MTB_Mm-int LTR MaLR 851 1098 0 5 1305 325 44 0 0 chr1 94432419 94432464 -102762968 + MTB_Mm LTR MaLR 1 45 -362 5 1305 560 296 103 17 chr1 94432473 94433195 -102762237 + L1MA4 LINE L1 4692 5525 -772 5 1305 413 244 104 43 chr1 94433343 94433572 -102761860 + L1MA4 LINE L1 5750 6001 -182 5 1305 309 169 0 0 chr1 94433784 94433843 -102761589 + (CGGGG)n Simple_repeat Simple_repeat 5 63 0 5 1305 397 311 66 0 chr1 94434036 94434158 -102761274 - B1F2 SINE Alu -17 132 3 5 1305 276 227 30 30 chr1 94434302 94434402 -102761030 + MLT1A1 LTR MaLR 308 407 -1 5 1305 402 274 97 85 chr1 94434403 94434734 -102760698 + L1M4 LINE L1 2599 2933 -3213 5 1305 451 272 22 39 chr1 94434764 94434944 -102760488 + Lx8 LINE L1 7296 7472 -1 5 1305 350 224 42 94 chr1 94434939 94435131 -102760301 + L1M4 LINE L1 2919 3100 -3046 5 1305 1318 311 41 7 chr1 94435497 94436136 -102759296 - L1MA4 LINE L1 -417 5883 5225 5 1305 1287 84 0 0 chr1 94436186 94436364 -102759068 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1305 382 204 0 19 chr1 94436364 94436469 -102758963 + CT-rich Low_complexity Low_complexity 2 104 0 5 1305 366 327 45 30 chr1 94436476 94436807 -102758625 - L1MA4 LINE L1 -923 5220 4885 5 1305 1868 99 115 10 chr1 94436820 94437115 -102758317 + ORR1A3 LTR MaLR 1 326 0 5 1305 778 278 57 68 chr1 94437118 94437480 -102757952 - L1M2 LINE L1 -944 5199 4848 5 1305 513 32 0 0 chr1 94437480 94437543 -102757889 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1305 778 278 57 68 chr1 94437543 94437636 -102757796 - L1M2 LINE L1 -1296 4847 4750 5 1305 494 238 43 12 chr1 94437653 94437815 -102757617 + L1MB3 LINE L1 6016 6182 -1 5 1305 948 201 56 19 chr1 94438396 94438609 -102756823 + MTE2a LTR MaLR 3 223 -156 5 1305 247 256 24 24 chr1 94438763 94438847 -102756585 - RMER15 LTR ERVL -152 423 340 5 1305 530 264 47 7 chr1 94438976 94439125 -102756307 + MTE2a LTR MaLR 225 379 0 5 1305 2073 142 77 26 chr1 94439237 94439614 -102755818 - Lx5 LINE L1 -974 6076 5681 5 1305 5020 158 38 20 chr1 94439611 94440462 -102754970 + Lx5 LINE L1 6064 6929 -121 5 1305 354 74 0 0 chr1 94440841 94440895 -102754537 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1305 1171 82 0 0 chr1 94440927 94441073 -102754359 - B1_Mm SINE Alu -1 146 1 5 1305 463 168 39 19 chr1 94441102 94441205 -102754227 + RLTR23 LTR ERV1 324 428 -2 5 1305 432 202 105 0 chr1 94441218 94441332 -102754100 + Lx5 LINE L1 6924 7049 -1 5 1305 269 244 35 35 chr1 94442017 94442102 -102753330 + RMER15 LTR ERVL 64 148 -427 5 1305 862 273 33 45 chr1 94443163 94443500 -102751932 - L1_Mur3 LINE L1 -2083 3797 3465 5 1305 1184 167 5 0 chr1 94443729 94443939 -102751493 - Lx2B LINE L1 -10 6990 6780 5 1305 273 281 152 88 chr1 94444017 94444313 -102751119 - RLTR26 LTR ERVK -152 490 176 5 1305 2315 139 3 10 chr1 94444465 94444850 -102750582 + L1_Mur2 LINE L1 2514 2895 -2982 5 1305 36309 58 2 2 chr1 94444861 94448742 -102746690 - L1Md_F2 LINE L1 -1 6581 2708 5 1305 2936 6 0 0 chr1 94448742 94449064 -102746368 + RLTRETN_Mm LTR ERVK 1 322 0 5 1305 36309 92 2 18 chr1 94449064 94451520 -102743912 - L1Md_F2 LINE L1 -3176 2707 310 5 1305 15753 174 58 15 chr1 94451515 94455446 -102739986 + Lx5 LINE L1 2880 6969 -81 5 1305 390 21 0 0 chr1 94455451 94455498 -102739934 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 5 1305 805 272 76 14 chr1 94456512 94456788 -102738644 + MLT2B4 LTR ERVL 12 304 -252 5 1305 7599 82 20 3 chr1 94456822 94457826 -102737606 + RLTR13D5 LTR ERVK 1 1021 -2 5 1305 735 220 0 20 chr1 94457917 94458070 -102737362 + L1VL2 LINE L1 120 269 -6066 5 1305 7170 121 35 7 chr1 94458068 94459881 -102735551 + Lx LINE L1 4803 6647 -7 5 1305 1130 147 121 0 chr1 94460573 94460771 -102734661 + MYSERV6-int LTR ERVK 8652 8873 -86 5 1305 991 222 126 25 chr1 94460794 94461071 -102734361 + RLTR12B LTR ERVK 1 305 -223 6 1305 852 178 11 61 chr1 94461071 94461251 -102734181 + Lx5 LINE L1 4669 4839 -1038 6 1305 22751 19 0 0 chr1 94461256 94463852 -102731580 + L1Md_A LINE L1 2990 5586 -297 6 1305 8662 28 0 0 chr1 94463853 94464841 -102730591 + L1Md_A LINE L1 5588 6575 -7 6 1305 6086 213 41 15 chr1 94464841 94466625 -102728807 + Lx5 LINE L1 4835 7047 -3 6 1305 596 133 0 26 chr1 94468736 94468852 -102726580 + Lx LINE L1 6537 6649 -5 6 1305 293 100 20 0 chr1 94468894 94468944 -102726488 + (TCTCCC)n Simple_repeat Simple_repeat 3 53 0 6 1305 382 276 75 9 chr1 94471085 94471191 -102724241 + B3A SINE B2 4 116 -82 6 1305 202 162 27 0 chr1 94471719 94471756 -102723676 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1305 356 224 41 0 chr1 94472159 94472257 -102723175 + MYSERV6-int LTR ERVK 1199 1300 -7659 6 1305 3184 159 12 108 chr1 94472259 94473110 -102722322 + L1_Mus2 LINE L1 588 1380 -4497 6 1305 427 98 11 32 chr1 94473110 94473196 -102722236 + RMER17B LTR ERVK 312 398 -560 6 1305 587 51 0 12 chr1 94473196 94473276 -102722156 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1305 29321 90 19 41 chr1 94473284 94478615 -102716817 + L1_Mus2 LINE L1 1381 6566 0 6 1305 261 0 0 0 chr1 94478635 94478664 -102716768 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 1305 1117 254 132 12 chr1 94478669 94479071 -102716361 + MYSERV6-int LTR ERVK 1292 1741 -7218 6 1305 1919 267 35 74 chr1 94479204 94480057 -102715375 + MYSERV-int LTR ERVK 4338 5157 -1393 6 1305 962 202 105 16 chr1 94480128 94480375 -102715057 + MYSERV6-int LTR ERVK 8219 8487 -472 6 1305 366 173 61 12 chr1 94480378 94480460 -102714972 + RLTR12B LTR ERVK 415 500 -28 6 1305 447 311 57 16 chr1 94480579 94480773 -102714659 - MTE-int LTR MaLR -42 1538 1180 6 1305 1027 232 112 0 chr1 94480776 94481043 -102714389 + ORR1D1 LTR MaLR 1 297 -77 6 1305 4279 58 0 0 chr1 94481051 94481571 -102713861 + L1_Mus1 LINE L1 6048 6567 0 6 1305 204 97 0 0 chr1 94485830 94485861 -102709571 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 6 1305 230 335 28 17 chr1 94487414 94487590 -102707842 + L1_Rod LINE L1 490 667 -6505 6 1305 305 244 104 48 chr1 94487750 94487875 -102707557 + Lx7 LINE L1 7565 7696 0 6 1305 25 31 0 0 chr1 94487887 94487919 -102707513 + AT_rich Low_complexity Low_complexity 1 32 0 6 1305 1212 117 15 10 chr1 94488085 94488283 -102707149 + RMER19A LTR ERVK 539 737 0 6 1305 315 208 336 34 chr1 94488284 94488328 -102707104 + Lx8 LINE L1 7278 7321 -152 6 1305 302 0 26 0 chr1 94488328 94488366 -102707066 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1305 315 208 336 34 chr1 94488366 94488470 -102706962 + Lx8 LINE L1 7322 7470 -3 6 1305 441 197 85 16 chr1 94488487 94488616 -102706816 + L1MA5A LINE L1 5299 5436 -864 6 1305 617 242 135 10 chr1 94488621 94488813 -102706619 + B3 SINE B2 1 216 0 6 1305 6812 59 57 2 chr1 94488833 94489714 -102705718 - RLTR13B3 LTR ERVK 0 929 1 6 1305 746 211 0 0 chr1 94489719 94489852 -102705580 + B1_Mus1 SINE Alu 15 147 -1 6 1305 909 290 88 26 chr1 94489945 94490374 -102705058 + L1MA5A LINE L1 5473 5906 -1567 6 1305 224 303 0 22 chr1 94494119 94494210 -102701222 + CT-rich Low_complexity Low_complexity 2 90 0 6 1305 350 279 87 24 chr1 94495946 94496152 -102699280 - L1M3d LINE L1 -4520 1371 1153 6 1305 204 125 0 0 chr1 94497454 94497486 -102697946 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1305 3339 92 0 17 chr1 94497550 94498026 -102697406 - L1_Mus4 LINE L1 0 6636 6169 6 1305 584 102 23 0 chr1 94498274 94498362 -102697070 + B1_Mus2 SINE Alu 52 141 -6 6 1305 216 97 0 0 chr1 94498362 94498393 -102697039 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1305 592 222 117 0 chr1 94499775 94499946 -102695486 + L1MC1 LINE L1 5925 6115 -218 6 1305 259 203 68 0 chr1 94500053 94500127 -102695305 + L1MC2 LINE L1 6263 6341 -3 1 1305 426 39 0 0 chr1 94501445 94501497 -102693935 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1306 218 204 20 0 chr1 94505525 94505574 -102689858 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 3 1306 369 128 18 27 chr1 94506305 94506417 -102689015 + (TCTCTG)n Simple_repeat Simple_repeat 4 114 0 4 1306 841 229 189 43 chr1 94507025 94507326 -102688106 - ORR1E LTR MaLR -10 349 5 5 1306 477 0 0 0 chr1 94509026 94509079 -102686353 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1306 666 185 28 2 chr1 94509232 94509357 -102686075 + B1_Mur2 SINE Alu 1 141 -6 7 1306 437 104 13 0 chr1 94509389 94509466 -102685966 + (TA)n Simple_repeat Simple_repeat 1 78 0 8 1306 252 0 0 0 chr1 94509556 94509584 -102685848 + (TA)n Simple_repeat Simple_repeat 2 29 0 9 1306 226 214 143 0 chr1 94509753 94509809 -102685623 - RMER15 LTR ERVL -108 467 404 1 1306 236 196 0 19 chr1 94509920 94509972 -102685460 - Lx8 LINE L1 -653 6820 6770 1 1306 835 253 118 4 chr1 94509970 94510216 -102685216 + Lx8 LINE L1 6852 7125 -348 1 1306 908 261 84 14 chr1 94510221 94510508 -102684924 - Lx8 LINE L1 -769 6704 6398 1 1306 420 250 27 27 chr1 94510789 94510900 -102684532 - PB1D10 SINE Alu 0 117 7 1 1306 240 35 0 0 chr1 94510994 94511023 -102684409 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1 1306 265 232 29 0 chr1 94511527 94511596 -102683836 + L1MC5 LINE L1 7168 7238 -723 1 1306 525 313 109 104 chr1 94511687 94512283 -102683149 + L1MC5 LINE L1 7311 7909 -52 1 1306 349 281 40 42 chr1 94512323 94512441 -102682991 - PB1D9 SINE Alu 0 120 4 1 1306 1407 249 107 18 chr1 94512756 94512963 -102682469 - MTD LTR MaLR 0 419 196 1 1306 342 0 0 0 chr1 94512963 94513001 -102682431 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1306 1407 249 107 18 chr1 94513001 94513177 -102682255 - MTD LTR MaLR -224 195 4 1 1306 773 191 46 138 chr1 94518082 94518150 -102677282 + B3A SINE B2 1 68 -130 1 1306 2724 68 59 0 chr1 94518150 94518489 -102676943 + RLTR10D LTR ERVK 1 359 0 1 1306 773 191 46 138 chr1 94518489 94518638 -102676794 + B3A SINE B2 69 198 0 1 1306 461 328 130 29 chr1 94519184 94519423 -102676009 - Tigger5 DNA MER2_type 0 2406 2144 2 1306 210 118 0 0 chr1 94519726 94519760 -102675672 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1306 1092 291 129 41 chr1 94519770 94520689 -102674743 - L1MA4 LINE L1 -365 5932 4878 2 1306 974 58 0 0 chr1 94520689 94520810 -102674622 - B1_Mus1 SINE Alu 0 148 28 2 1306 1092 291 129 41 chr1 94520810 94521646 -102673786 - L1MA4 LINE L1 -365 4877 3915 2 1306 442 324 156 13 chr1 94521653 94522293 -102673139 - L1MA4 LINE L1 -3007 3136 2375 2 1306 491 294 70 81 chr1 94522546 94522931 -102672501 - L1MDa LINE L1 -4598 2035 1656 2 1306 3343 161 137 3 chr1 94522934 94523532 -102671900 - RLTR33 LTR ERVK 0 678 1 2 1306 256 255 87 19 chr1 94523741 94523845 -102671587 + Lx8 LINE L1 7361 7471 -2 2 1306 1650 174 49 111 chr1 94524404 94524811 -102670621 + ORR1C2 LTR MaLR 1 382 -2 2 1306 375 302 0 40 chr1 94525404 94525504 -102669928 - PB1D7 SINE Alu -1 119 24 2 1306 248 287 99 6 chr1 94525645 94525817 -102669615 - L1M4 LINE L1 -748 5398 5211 2 1306 214 29 0 54 chr1 94527188 94527225 -102668207 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1306 366 302 115 56 chr1 94527416 94527835 -102667597 - L1M5 LINE L1 -473 5706 5267 3 1306 1364 93 38 0 chr1 94529545 94529728 -102665704 + B2_Mm2 SINE B2 2 191 -4 3 1306 1089 169 81 19 chr1 94529976 94530187 -102665245 + URR1A DNA MER1_type 1 224 -2 3 1306 210 128 0 0 chr1 94530890 94530929 -102664503 + (TCC)n Simple_repeat Simple_repeat 1 39 0 3 1306 181 137 19 87 chr1 94531085 94531189 -102664243 + (CACCC)n Simple_repeat Simple_repeat 5 101 0 3 1306 285 223 134 80 chr1 94531218 94531330 -102664102 + MLT1A0 LTR MaLR 24 141 -224 3 1306 193 327 0 16 chr1 94531409 94531473 -102663959 - L2c LINE L2 -7 3380 3308 3 1306 694 182 71 21 chr1 94531988 94532128 -102663304 + B1_Mur2 SINE Alu 2 148 -1 3 1306 1342 50 50 11 chr1 94532128 94532310 -102663122 + B2_Mm2 SINE B2 1 189 -6 3 1306 189 107 0 0 chr1 94536955 94536983 -102658449 + (TCTCTG)n Simple_repeat Simple_repeat 1 28 0 4 1306 2070 119 132 30 chr1 94537326 94537697 -102657735 + MTC LTR MaLR 5 413 -8 4 1306 301 309 86 47 chr1 94538042 94538276 -102657156 + MER90a LTR ERV1 132 374 -240 4 1306 393 257 179 27 chr1 94538907 94539131 -102656301 + L1MB2 LINE L1 5722 5979 -192 4 1306 714 240 229 30 chr1 94539350 94539655 -102655777 + MER31A LTR ERV1 7 372 -113 4 1306 229 88 123 0 chr1 94539743 94539800 -102655632 + (GGTTG)n Simple_repeat Simple_repeat 2 65 0 4 1306 684 237 65 7 chr1 94543930 94544083 -102651349 + RSINE1 SINE B4 2 163 -2 4 1306 308 263 71 31 chr1 94545814 94545912 -102649520 + MER53 DNA hAT 1 102 -91 4 1306 207 0 0 0 chr1 94546493 94546516 -102648916 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1306 2355 157 75 3 chr1 94547183 94547572 -102647860 + MTC LTR MaLR 5 421 0 4 1306 180 284 0 0 chr1 94551645 94551712 -102643720 + (CATA)n Simple_repeat Simple_repeat 1 67 0 5 1306 629 303 101 53 chr1 94555298 94555636 -102639796 - MLT1A0 LTR MaLR -1 364 11 5 1306 1457 90 0 0 chr1 94557168 94557357 -102638075 - B2_Mm2 SINE B2 -6 189 1 5 1306 325 258 0 93 chr1 94557453 94557465 -102637967 - ID_B1 SINE B4 -26 198 102 5 1306 419 242 11 0 chr1 94557465 94557560 -102637872 - PB1D10 SINE Alu -1 116 21 5 1306 1121 212 30 0 chr1 94558275 94558473 -102636959 - B3 SINE B2 -12 204 1 5 1306 784 196 0 0 chr1 94558827 94558960 -102636472 + RSINE1 SINE B4 2 134 -31 5 1306 772 267 25 6 chr1 94559094 94559256 -102636176 + B3A SINE B2 3 167 -31 5 1306 267 54 0 0 chr1 94559256 94559293 -102636139 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1306 270 0 0 0 chr1 94559293 94559323 -102636109 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1306 603 0 0 0 chr1 94559323 94559389 -102636043 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1306 212 239 0 0 chr1 94559394 94559440 -102635992 + ID4_ SINE ID 37 82 -1 6 1306 1828 338 88 22 chr1 94560142 94561565 -102633867 - L1M5 LINE L1 -1984 4162 2645 6 1306 339 307 166 57 chr1 94562663 94562914 -102632518 + MLT1F2 LTR MaLR 253 680 0 6 1306 526 300 91 47 chr1 94563144 94563462 -102631970 - MLT1B LTR MaLR 0 390 59 6 1306 365 286 60 72 chr1 94565183 94565370 -102630062 + MLT1F2 LTR MaLR 324 485 -75 6 1306 518 278 82 33 chr1 94565420 94565602 -102629830 + ORR1E LTR MaLR 1 191 -168 6 1306 1032 219 257 24 chr1 94565585 94565963 -102629469 - RMER20B LTR ERVK -36 591 126 6 1306 240 23 21 64 chr1 94566362 94566409 -102629023 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 6 1306 1442 246 54 11 chr1 94566418 94566771 -102628661 + ORR1D2 LTR MaLR 3 370 0 6 1306 239 280 61 51 chr1 94567608 94567706 -102627726 + ORR1E LTR MaLR 279 377 -2 6 1306 1936 330 118 20 chr1 94567708 94568504 -102626928 + ORR1E-int LTR MaLR 1 874 -706 6 1306 1094 195 18 18 chr1 94568579 94568804 -102626628 - URR1B DNA MER1_type 0 225 1 7 1306 381 43 0 0 chr1 94569975 94570022 -102625410 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1306 239 224 87 76 chr1 94570832 94570924 -102624508 + MER20 DNA MER1_type 48 140 -79 7 1306 1880 155 201 76 chr1 94570969 94571431 -102624001 + RLTR28 LTR ERVL 3 522 -2 7 1306 268 194 0 75 chr1 94572672 94572739 -102622693 + MTEa LTR MaLR 315 376 -3 7 1306 288 0 0 0 chr1 94575290 94575322 -102620110 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 1306 315 319 184 9 chr1 94575608 94575820 -102619612 + L1MC4a LINE L1 3639 3887 -2259 7 1306 341 348 12 42 chr1 94575878 94576046 -102619386 + L1MC4a LINE L1 5748 5910 -1972 7 1306 591 112 0 0 chr1 94579391 94579480 -102615952 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 7 1306 333 266 128 0 chr1 94580400 94580494 -102614938 - RMER30 DNA MER1_type -1 201 96 7 1306 536 271 25 0 chr1 94580556 94580678 -102614754 - B4A SINE B4 -129 163 39 7 1306 1435 55 16 16 chr1 94580925 94581109 -102614323 - B2_Mm2 SINE B2 -10 185 2 8 1306 1031 79 66 12 chr1 94581286 94581453 -102613979 + L1Md_F3 LINE L1 6409 6584 0 8 1306 196 174 54 0 chr1 94581882 94581974 -102613458 + (TA)n Simple_repeat Simple_repeat 1 97 0 8 1306 324 386 57 5 chr1 94582120 94582199 -102613233 - L1M5 LINE L1 -2569 3577 3493 8 1306 450 0 0 0 chr1 94582199 94582249 -102613183 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1306 324 386 57 5 chr1 94582249 94582380 -102613052 - L1M5 LINE L1 -2654 3492 3357 8 1306 277 232 292 18 chr1 94582521 94582798 -102612634 - L1M5 LINE L1 -2956 3190 2838 8 1306 182 283 0 32 chr1 94583344 94583406 -102612026 + L2a LINE L2 3344 3403 -23 8 1306 359 298 0 0 chr1 94583494 94583578 -102611854 - MTEa LTR MaLR -7 372 289 8 1306 342 0 0 0 chr1 94584313 94584351 -102611081 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 8 1306 543 196 0 0 chr1 94584482 94584574 -102610858 + ID_B1 SINE B4 125 216 -8 8 1306 582 176 0 0 chr1 94584574 94584693 -102610739 + GA-rich Low_complexity Low_complexity 1 119 0 8 1306 1173 177 10 0 chr1 94584959 94585168 -102610264 + MTD LTR MaLR 1 211 -208 9 1306 1837 18 9 0 chr1 94585170 94585387 -102610045 - L1Md_F2 LINE L1 -354 6228 6010 9 1306 2788 60 0 11 chr1 94585388 94585743 -102609689 + L1Md_F2 LINE L1 6232 6582 0 9 1306 899 166 153 11 chr1 94585764 94585947 -102609485 + MTD LTR MaLR 196 404 -15 9 1306 1068 229 173 30 chr1 94585967 94586296 -102609136 - MTE2a LTR MaLR 0 379 4 9 1306 341 236 59 102 chr1 94587949 94588067 -102607365 - ID_B1 SINE B4 -125 167 55 9 1306 256 266 0 30 chr1 94588561 94588627 -102606805 + (TATG)n Simple_repeat Simple_repeat 4 67 0 9 1306 769 197 0 0 chr1 94588900 94589027 -102606405 + B4A SINE B4 1 127 -165 9 1306 306 0 0 0 chr1 94589099 94589133 -102606299 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1306 305 286 95 48 chr1 94590415 94590562 -102604870 + YREP_Mm Unknown Unknown 143 296 -1516 9 1306 671 211 30 0 chr1 94590442 94590575 -102604857 - ID_B1 SINE B4 0 224 88 9 1306 425 195 12 12 chr1 94591520 94591603 -102603829 + B4A SINE B4 1 83 -209 9 1306 498 17 0 0 chr1 94591742 94591801 -102603631 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1306 384 22 0 0 chr1 94591801 94591845 -102603587 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1306 534 275 14 34 chr1 94592067 94592214 -102603218 + B1F SINE Alu 6 149 0 1 1306 2311 117 61 3 chr1 94592302 94592661 -102602771 - ORR1C2 LTR MaLR 0 384 5 1 1306 351 276 0 6 chr1 94596629 94596709 -102598723 - B1_Mur1 SINE Alu -4 145 40 1 1306 279 267 0 0 chr1 94596716 94596776 -102598656 - B1F SINE Alu -23 126 67 1 1306 381 304 69 0 chr1 94596750 94596852 -102598580 - B1F2 SINE Alu -28 121 13 1 1306 241 247 0 12 chr1 94596864 94596905 -102598527 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 1 1306 207 0 0 0 chr1 94596905 94596928 -102598504 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1306 241 247 0 12 chr1 94596928 94596968 -102598464 + (TCTCTG)n Simple_repeat Simple_repeat 6 45 0 1 1306 457 172 12 12 chr1 94596969 94597134 -102598298 + (TCTG)n Simple_repeat Simple_repeat 4 168 0 1 1306 775 273 57 37 chr1 94597136 94597490 -102597942 - Lx8 LINE L1 -146 7327 6967 1 1306 180 0 0 0 chr1 94597542 94597562 -102597870 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1306 281 276 0 0 chr1 94598947 94599005 -102596427 + RMER30 DNA MER1_type 18 75 -127 1 1306 297 156 0 0 chr1 94599010 94599087 -102596345 + GA-rich Low_complexity Low_complexity 2 78 0 1 1306 280 351 0 31 chr1 94599092 94599189 -102596243 + RMER30 DNA MER1_type 108 201 -1 1 1306 828 124 35 35 chr1 94599428 94599570 -102595862 + B1_Mur3 SINE Alu 3 144 -5 1 1306 235 303 0 0 chr1 94600223 94600289 -102595143 + C-rich Low_complexity Low_complexity 4 69 0 1 1306 1241 241 39 20 chr1 94600394 94600784 -102594648 - L1MB8 LINE L1 -85 6093 5697 1 1306 331 260 107 53 chr1 94600867 94601111 -102594321 - L1MB8 LINE L1 -618 5556 5300 1 1306 653 264 82 51 chr1 94601114 94601368 -102594064 + MTD LTR MaLR 3 283 -96 1 1306 3290 51 2 8 chr1 94601368 94601766 -102593666 + MTA_Mm LTR MaLR 1 396 0 1 1306 8067 72 6 68 chr1 94601766 94602936 -102592496 + MTA_Mm-int LTR MaLR 1 1098 0 1 1306 3182 61 10 0 chr1 94602936 94603332 -102592100 + MTA_Mm LTR MaLR 1 400 0 1 1306 552 268 164 113 chr1 94603332 94603433 -102591999 + MTD LTR MaLR 284 377 -2 1 1306 1177 243 20 85 chr1 94603533 94603839 -102591593 - B4A SINE B4 0 292 7 1 1306 269 259 140 70 chr1 94603875 94604132 -102591300 - L1MB8 LINE L1 -982 5164 4890 1 1306 324 258 174 8 chr1 94604351 94604472 -102590960 - Lx8 LINE L1 -162 7311 7171 1 1306 366 80 0 0 chr1 94604596 94604646 -102590786 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1306 563 269 127 0 chr1 94604653 94604787 -102590645 - B3A SINE B2 -47 151 1 1 1306 205 333 0 0 chr1 94604982 94605045 -102590387 + MIR3 SINE MIR 108 170 -38 1 1306 382 260 129 38 chr1 94605698 94605830 -102589602 - B1F SINE Alu -2 147 4 1 1306 1208 138 0 110 chr1 94606669 94606906 -102588526 + URR1B DNA MER1_type 1 211 -14 1 1306 230 297 62 52 chr1 94606952 94607048 -102588384 - MLT1I LTR MaLR -247 164 68 1 1306 207 0 0 0 chr1 94610499 94610522 -102584910 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1306 1179 231 210 27 chr1 94610522 94610860 -102584572 + MTD LTR MaLR 20 419 0 1 1306 230 340 84 62 chr1 94611105 94611331 -102584101 - MLT1C LTR MaLR -231 236 6 1 1306 1608 184 106 26 chr1 94613566 94613945 -102581487 - MTD LTR MaLR -10 409 1 1 1306 544 307 99 0 chr1 94614355 94614557 -102580875 + ID_B1 SINE B4 2 223 -1 1 1306 261 0 0 0 chr1 94615084 94615113 -102580319 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1306 285 274 0 40 chr1 94617059 94617135 -102578297 + G-rich Low_complexity Low_complexity 4 76 0 1 1306 386 358 58 25 chr1 94617972 94618353 -102577079 - L1ME2 LINE L1 -184 5978 5587 1 1306 1812 202 54 25 chr1 94618705 94619112 -102576320 - MTC LTR MaLR -2 419 1 1 1306 4278 27 0 0 chr1 94619115 94619629 -102575803 + L1Md_T LINE L1 5711 6224 -358 1 1306 3724 183 64 22 chr1 94619664 94620508 -102574924 - Lx9 LINE L1 -9 7635 6757 1 1306 516 32 0 0 chr1 94620586 94620648 -102574784 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1306 409 34 34 0 chr1 94620650 94620709 -102574723 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1306 515 311 128 35 chr1 94622730 94623040 -102572392 + ORR1E LTR MaLR 8 346 -13 1 1306 908 222 34 13 chr1 94623040 94623277 -102572155 + ORR1E-int LTR MaLR 1 242 -1338 1 1306 455 246 32 24 chr1 94623351 94623476 -102571956 - B1F SINE Alu -15 134 9 1 1306 442 291 0 101 chr1 94623547 94623746 -102571686 + B3A SINE B2 4 182 -16 1 1306 365 288 126 82 chr1 94623773 94624091 -102571341 + ORR1E-int LTR MaLR 456 787 -793 1 1306 1186 312 128 19 chr1 94624102 94624644 -102570788 + ORR1E-int LTR MaLR 924 1527 -53 1 1306 724 275 337 14 chr1 94624644 94624922 -102570510 + ORR1E LTR MaLR 1 368 -11 1 1306 23 0 0 0 chr1 94625076 94625099 -102570333 + AT_rich Low_complexity Low_complexity 1 23 0 1 1306 217 333 26 0 chr1 94627978 94628056 -102567376 + MER5B DNA MER1_type 1 80 -98 1 1306 1024 82 145 12 chr1 94628972 94629144 -102566288 + B2_Mm2 SINE B2 1 195 0 1 1306 203 167 28 0 chr1 94629144 94629180 -102566252 + GA-rich Low_complexity Low_complexity 3 39 0 1 1306 233 193 88 0 chr1 94631469 94631526 -102563906 + CT-rich Low_complexity Low_complexity 2 63 0 1 1306 870 119 15 0 chr1 94632320 94632454 -102562978 - B1_Mus1 SINE Alu -3 145 10 1 1306 445 287 106 20 chr1 94633766 94633965 -102561467 - L1M3 LINE L1 -501 5679 5464 1 1307 467 205 4 56 chr1 94636688 94636921 -102558511 + CT-rich Low_complexity Low_complexity 1 221 0 1 1307 534 82 0 0 chr1 94637555 94637640 -102557792 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 1307 369 0 0 0 chr1 94637640 94637681 -102557751 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1307 602 304 218 19 chr1 94640235 94640799 -102554633 + Charlie1a DNA MER1_type 510 1185 -270 1 1307 356 285 134 35 chr1 94640828 94640970 -102554462 + RSINE1 SINE B4 10 165 0 1 1307 228 279 105 0 chr1 94640989 94641075 -102554357 + Charlie1a DNA MER1_type 1192 1286 -169 1 1307 236 91 0 22 chr1 94641088 94641133 -102554299 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1307 1812 82 38 0 chr1 94641133 94641400 -102554032 - Lx2 LINE L1 -2 6995 6719 1 1307 1383 126 13 26 chr1 94642240 94642469 -102552963 + URR1A DNA MER1_type 1 226 0 1 1307 343 350 76 0 chr1 94642702 94642859 -102552573 + ORR1E LTR MaLR 21 189 -170 1 1307 414 308 94 17 chr1 94642980 94643229 -102552203 + ORR1E-int LTR MaLR 5 290 -1080 1 1307 342 0 0 0 chr1 94643229 94643267 -102552165 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1307 688 335 35 25 chr1 94643292 94643574 -102551858 + ORR1E-int LTR MaLR 400 684 -896 1 1307 562 320 36 14 chr1 94643614 94643836 -102551596 + ORR1E-int LTR MaLR 879 1105 -475 1 1307 710 333 18 18 chr1 94643883 94644155 -102551277 + MTD LTR MaLR 10 281 -138 1 1307 544 197 42 17 chr1 94644167 94644332 -102551100 + MTD LTR MaLR 236 406 -15 1 1307 464 370 0 0 chr1 94644323 94644477 -102550955 + ORR1E-int LTR MaLR 1134 1287 -293 1 1307 798 165 6 12 chr1 94644477 94644643 -102550789 - ORR1B1-int LTR MaLR -48 1461 1297 1 1307 667 251 99 24 chr1 94644646 94644833 -102550599 + ORR1E-int LTR MaLR 1326 1528 -52 1 1307 316 264 52 52 chr1 94644833 94644949 -102550483 + ORR1E LTR MaLR 1 116 -243 1 1307 405 39 0 0 chr1 94645088 94645139 -102550293 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1307 1342 215 86 17 chr1 94645447 94645797 -102549635 + ORR1D1 LTR MaLR 1 374 0 1 1307 207 100 0 0 chr1 94646415 94646445 -102548987 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1 1307 1394 61 17 0 chr1 94646445 94646625 -102548807 - B2_Mm2 SINE B2 -11 184 2 1 1307 1115 214 36 141 chr1 94650379 94650797 -102544635 - MTE2a LTR MaLR 0 379 6 1 1307 1922 127 34 15 chr1 94653408 94653736 -102541696 + Lx2A1 LINE L1 6673 7006 -2 1 1307 237 325 119 37 chr1 94654790 94654924 -102540508 + ORR1E LTR MaLR 5 149 -210 1 1307 369 0 0 0 chr1 94656030 94656071 -102539361 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1307 799 203 0 7 chr1 94656610 94656892 -102538540 + (CA)n Simple_repeat Simple_repeat 1 279 0 1 1307 228 35 0 0 chr1 94658040 94658069 -102537363 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1307 1196 276 69 60 chr1 94658616 94659082 -102536350 - MT2A LTR ERVL -1 532 63 1 1307 398 320 114 41 chr1 94658878 94659168 -102536264 - MTD LTR MaLR -101 318 8 1 1307 465 214 0 0 chr1 94659699 94659858 -102535574 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 1307 595 237 32 6 chr1 94659861 94660018 -102535414 - RSINE1 SINE B4 0 165 5 1 1307 249 33 0 0 chr1 94660038 94660068 -102535364 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1307 1116 58 0 0 chr1 94661133 94661270 -102534162 + B1_Mm SINE Alu 1 137 -10 1 1307 315 0 0 0 chr1 94661270 94661305 -102534127 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1307 242 282 36 60 chr1 94661331 94661414 -102534018 - MLT1I LTR MaLR -230 181 101 1 1307 377 361 90 4 chr1 94661413 94661658 -102533774 + MER70B LTR ERVL 5 270 -308 1 1307 21 0 0 0 chr1 94663010 94663031 -102532401 + GC_rich Low_complexity Low_complexity 1 21 0 1 1307 1572 139 70 91 chr1 94664458 94664831 -102530601 + L1_Mus4 LINE L1 6266 6630 -6 1 1307 938 90 59 48 chr1 94664855 94665024 -102530408 + L1_Mus4 LINE L1 6448 6620 -16 1 1307 204 125 0 0 chr1 94665024 94665056 -102530376 + (CAG)n Simple_repeat Simple_repeat 1 32 0 1 1307 938 90 59 48 chr1 94665056 94665073 -102530359 + L1_Mus4 LINE L1 6621 6636 0 1 1307 2078 187 9 71 chr1 94667667 94668105 -102527327 + MTD LTR MaLR 1 411 -8 1 1307 211 206 15 73 chr1 94669107 94669175 -102526257 + L4 LINE RTE 204 267 -1762 1 1307 1873 141 67 47 chr1 94670270 94670672 -102524760 - Lx4B LINE L1 0 7058 6649 1 1307 396 0 0 0 chr1 94670903 94670947 -102524485 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1307 337 222 14 14 chr1 94672442 94672515 -102522917 + ID4 SINE ID 1 73 -10 1 1307 206 32 0 31 chr1 94672796 94672828 -102522604 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1307 1357 258 23 26 chr1 94673705 94674051 -102521381 + ORR1E LTR MaLR 6 350 -9 1 1307 232 204 0 0 chr1 94674350 94674399 -102521033 + B3A SINE B2 75 123 -75 1 1307 29 28 0 0 chr1 94674421 94674457 -102520975 + AT_rich Low_complexity Low_complexity 1 36 0 1 1307 471 179 60 0 chr1 94674468 94674552 -102520880 + B4 SINE B4 199 287 -5 1 1307 2017 232 91 81 chr1 94674555 94675386 -102520046 - RMER19B LTR ERVK -240 662 1 1 1307 1038 206 94 47 chr1 94676306 94676581 -102518851 + B4 SINE B4 5 292 0 1 1307 477 150 0 0 chr1 94676581 94676681 -102518751 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1307 302 146 62 0 chr1 94676682 94676730 -102518702 + HAL1-3A_ME LINE L1 1978 2028 -830 1 1307 393 248 0 0 chr1 94676738 94676899 -102518533 + (CA)n Simple_repeat Simple_repeat 2 162 0 2 1307 254 292 31 0 chr1 94676914 94677010 -102518422 + (CATA)n Simple_repeat Simple_repeat 2 100 0 2 1307 922 192 88 14 chr1 94677209 94677428 -102518004 - ORR1D1 LTR MaLR -165 209 5 2 1307 763 285 130 24 chr1 94678183 94678396 -102517036 + MTE2b LTR MaLR 1 231 -148 2 1307 901 166 7 0 chr1 94678396 94678541 -102516891 - B1_Mus1 SINE Alu 0 148 3 2 1307 763 285 130 24 chr1 94678541 94678658 -102516774 + MTE2b LTR MaLR 232 365 -14 2 1307 2649 83 0 0 chr1 94680391 94680718 -102514714 - ORR1A2 LTR MaLR 0 327 1 2 1307 449 292 71 21 chr1 94681870 94682010 -102513422 + MLT1A0 LTR MaLR 3 149 -216 2 1307 571 265 211 22 chr1 94682019 94682204 -102513228 + B4 SINE B4 4 223 -69 2 1307 1280 231 15 18 chr1 94682215 94682488 -102512944 + B4A SINE B4 3 274 -18 2 1307 308 284 215 45 chr1 94682509 94682686 -102512746 + MLT1A0 LTR MaLR 156 362 -3 2 1307 225 250 0 35 chr1 94685310 94685368 -102510064 - LTR86B2 LTR ERVL -422 65 10 2 1307 315 335 58 9 chr1 94686924 94687133 -102508299 - L1M5 LINE L1 -752 5421 5203 2 1307 273 299 121 20 chr1 94688650 94688697 -102506735 - PB1D9 SINE Alu -9 111 53 2 1307 432 0 0 0 chr1 94688697 94688745 -102506687 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1307 342 0 0 0 chr1 94688745 94688782 -102506650 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1307 273 299 121 20 chr1 94688782 94688832 -102506600 - PB1D9 SINE Alu -68 52 4 2 1307 386 283 157 17 chr1 94688832 94688863 -102506569 - ID_B1 SINE B4 -91 133 35 2 1307 270 0 0 0 chr1 94688863 94688893 -102506539 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1307 288 0 0 0 chr1 94688893 94688924 -102506508 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1307 386 283 157 17 chr1 94688924 94688956 -102506476 - ID SINE ID -190 34 4 2 1307 279 180 0 0 chr1 94688963 94689013 -102506419 + ID_B1 SINE B4 157 206 -18 2 1307 1195 68 0 0 chr1 94689545 94689692 -102505740 - B1_Mus1 SINE Alu 0 148 2 2 1307 543 91 0 0 chr1 94689731 94689808 -102505624 + L1_Mus2 LINE L1 6490 6566 0 2 1307 26 0 0 0 chr1 94689812 94689838 -102505594 + AT_rich Low_complexity Low_complexity 1 26 0 2 1307 202 132 0 26 chr1 94689889 94689928 -102505504 + T-rich Low_complexity Low_complexity 3 40 0 2 1307 659 265 87 0 chr1 94690223 94690408 -102505024 + ID_B1 SINE B4 3 203 -21 2 1307 228 278 48 73 chr1 94691748 94691872 -102503560 + MLT2B4 LTR ERVL 322 442 -114 2 1307 381 315 105 56 chr1 94691993 94692117 -102503315 + MER2 DNA MER2_type 59 201 -144 2 1307 3182 44 28 8 chr1 94692117 94692505 -102502927 + MTA_Mm LTR MaLR 1 396 0 2 1307 381 315 105 56 chr1 94692505 94692646 -102502786 + MER2 DNA MER2_type 202 337 -8 2 1307 312 254 42 0 chr1 94692714 94692785 -102502647 - B4A SINE B4 -217 75 2 2 1307 458 224 20 20 chr1 94692967 94693067 -102502365 + PB1 SINE Alu 12 111 -16 2 1307 528 16 0 0 chr1 94693147 94693208 -102502224 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1307 401 287 36 36 chr1 94693260 94693372 -102502060 - B4A SINE B4 -1 291 180 2 1307 287 296 28 0 chr1 94693392 94693463 -102501969 - B4A SINE B4 -216 76 4 2 1307 2023 78 151 0 chr1 94693463 94693747 -102501685 + ORR1A2 LTR MaLR 1 327 0 2 1307 210 37 0 0 chr1 94694386 94694413 -102501019 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1307 210 37 0 0 chr1 94694433 94694460 -102500972 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1307 1267 71 71 0 chr1 94695660 94695828 -102499604 + B2_Mm2 SINE B2 1 180 -15 2 1307 396 0 0 0 chr1 94699689 94699733 -102495699 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2 1307 360 307 25 131 chr1 94699982 94700226 -102495206 + MLT1D LTR MaLR 166 498 -7 2 1307 1351 126 51 9 chr1 94701350 94701567 -102493865 + ORR1B2 LTR MaLR 142 367 0 2 1307 419 325 165 24 chr1 94702033 94702525 -102492907 - L1MB8 LINE L1 -1 6177 5617 2 1307 338 238 25 12 chr1 94703207 94703288 -102492144 - ID4_ SINE ID 0 83 2 2 1307 922 285 5 0 chr1 94703676 94703897 -102491535 + ID_B1 SINE B4 3 224 0 2 1307 1164 156 44 5 chr1 94703918 94704124 -102491308 + B3 SINE B2 3 216 0 2 1307 816 159 43 7 chr1 94704586 94704725 -102490707 + B1_Mur2 SINE Alu 1 144 -5 2 1307 669 254 15 0 chr1 94705108 94705242 -102490190 + ID_B1 SINE B4 81 216 -8 2 1307 678 231 21 96 chr1 94705242 94705429 -102490003 + B4 SINE B4 1 173 -119 2 1307 484 250 10 0 chr1 94705458 94705562 -102489870 + B4 SINE B4 168 272 -20 2 1307 474 18 0 0 chr1 94705564 94705619 -102489813 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1307 557 192 94 23 chr1 94705862 94705990 -102489442 - MTD LTR MaLR -2 417 281 2 1307 3615 130 75 39 chr1 94706003 94706669 -102488763 - RMER6C LTR ERVK 0 690 1 2 1307 233 29 29 0 chr1 94706687 94706721 -102488711 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1307 2534 194 55 96 chr1 94706728 94707383 -102488049 - MTD-int LTR MaLR -630 628 1 2 1307 1574 228 124 11 chr1 94707383 94707747 -102487685 - MTD LTR MaLR 0 419 13 2 1307 438 20 0 0 chr1 94707747 94707798 -102487634 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 2 1307 750 264 108 70 chr1 94708701 94708797 -102486635 + MTE2a LTR MaLR 3 102 -317 2 1307 2325 101 99 14 chr1 94708797 94709160 -102486272 - ORR1B1 LTR MaLR 0 394 1 2 1307 978 246 84 48 chr1 94709160 94709464 -102485968 + MTE2a LTR MaLR 71 379 0 2 1307 930 35 0 0 chr1 94710827 94710941 -102484491 + (TATATG)n Simple_repeat Simple_repeat 2 115 0 2 1307 207 88 0 0 chr1 94711332 94711366 -102484066 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1307 228 175 31 31 chr1 94711961 94712026 -102483406 + (TTAGG)n Simple_repeat Simple_repeat 2 66 0 2 1307 243 0 0 0 chr1 94712036 94712063 -102483369 + (TTTAG)n Simple_repeat Simple_repeat 4 30 0 2 1307 243 233 48 32 chr1 94712270 94712332 -102483100 + MamGypLTR2 LTR Gypsy 66 128 -1061 2 1307 785 242 62 0 chr1 94712881 94713059 -102482373 + B4 SINE B4 1 189 -103 2 1307 465 148 12 24 chr1 94713052 94713135 -102482297 + MTE2a LTR MaLR 298 379 0 2 1307 277 278 77 122 chr1 94713211 94713504 -102481928 - MTE2a LTR MaLR -8 371 65 2 1307 265 370 28 0 chr1 94713518 94713626 -102481806 - MLT1A1 LTR MaLR -278 130 20 2 1307 368 298 208 13 chr1 94713629 94713860 -102481572 + RMER12 LTR ERVK 713 988 -334 2 1307 1257 209 79 11 chr1 94713900 94714166 -102481266 - B4 SINE B4 -6 286 3 2 1307 735 274 111 33 chr1 94714239 94714571 -102480861 + Lx8 LINE L1 7116 7473 0 2 1307 808 191 8 20 chr1 94714595 94714755 -102480677 + B3 SINE B2 7 153 -42 2 1307 615 27 0 0 chr1 94714755 94714828 -102480604 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 2 1307 547 265 35 91 chr1 94714828 94714866 -102480566 + B2_Mm2 SINE B2 154 193 -2 2 1307 381 341 84 50 chr1 94715082 94715344 -102480088 + L1M5 LINE L1 4433 4703 -1443 2 1307 285 29 0 0 chr1 94715743 94715777 -102479655 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1307 465 103 0 0 chr1 94715777 94715844 -102479588 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1307 270 81 0 0 chr1 94716060 94716097 -102479335 + (CAT)n Simple_repeat Simple_repeat 3 39 0 2 1307 411 234 128 28 chr1 94716270 94716411 -102479021 - MER34B-int LTR ERV1 -2171 3185 3031 2 1307 2587 52 6 58 chr1 94716854 94717199 -102478233 + ORR1A2 LTR MaLR 1 327 0 2 1307 639 144 0 0 chr1 94717423 94717534 -102477898 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 1307 615 311 57 16 chr1 94717535 94717728 -102477704 + Tigger7 DNA MER2_type 72 272 -2219 2 1307 527 318 69 18 chr1 94717739 94717957 -102477475 + Tigger7 DNA MER2_type 2254 2482 -9 2 1307 1000 289 55 13 chr1 94718065 94718374 -102477058 + MTE2b LTR MaLR 52 373 -6 2 1307 269 246 32 127 chr1 94718486 94718539 -102476893 - MER57F LTR ERV1 -239 197 149 2 1307 1063 200 40 5 chr1 94718539 94718740 -102476692 - B3 SINE B2 -8 208 1 2 1307 269 246 32 127 chr1 94718740 94718812 -102476620 - MER57F LTR ERV1 -288 148 84 2 1307 525 287 175 42 chr1 94718895 94719213 -102476219 - MLT1A1 LTR MaLR -2 406 16 2 1307 403 272 48 0 chr1 94719604 94719707 -102475725 + PB1D10 SINE Alu 10 117 0 2 1307 360 192 12 99 chr1 94719714 94719795 -102475637 + ID SINE ID 1 74 -150 2 1307 221 222 0 0 chr1 94720072 94720117 -102475315 + G-rich Low_complexity Low_complexity 3 47 0 2 1307 300 372 100 5 chr1 94720412 94720612 -102474820 - L1M4 LINE L1 -775 5371 5153 2 1307 191 182 0 13 chr1 94720612 94720690 -102474742 + (TTTG)n Simple_repeat Simple_repeat 1 77 0 2 1307 341 311 105 51 chr1 94720690 94720714 -102474718 - L1M4 LINE L1 -956 5184 5163 2 1307 1236 41 7 0 chr1 94720714 94720860 -102474572 - B1_Mm SINE Alu 0 147 1 2 1307 605 270 105 39 chr1 94720860 94721239 -102474193 - L1M4 LINE L1 -982 5164 4735 2 1307 680 159 67 22 chr1 94722943 94723078 -102472354 + B1_Mus1 SINE Alu 6 146 -2 2 1307 23 33 0 0 chr1 94727908 94727938 -102467494 + GC_rich Low_complexity Low_complexity 1 30 0 2 1307 240 35 0 0 chr1 94728131 94728160 -102467272 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 2 1307 201 239 0 0 chr1 94728165 94728211 -102467221 + C-rich Low_complexity Low_complexity 1 46 0 2 1307 29 60 0 0 chr1 94728211 94728261 -102467171 + GC_rich Low_complexity Low_complexity 1 50 0 2 1307 195 42 0 0 chr1 94729464 94729488 -102465944 + (TTCCC)n Simple_repeat Simple_repeat 5 28 0 2 1307 389 368 35 39 chr1 94736602 94736834 -102458598 + Charlie4a DNA MER1_type 95 325 -183 2 1307 218 273 18 0 chr1 94737154 94737209 -102458223 - L2b LINE L2 -26 3349 3294 2 1307 499 289 51 13 chr1 94737332 94737490 -102457942 + RSINE1 SINE B4 2 165 0 2 1307 237 362 0 36 chr1 94737511 94737594 -102457838 + ID4 SINE ID 2 81 -2 2 1307 1102 53 8 0 chr1 94737749 94737881 -102457551 + B1_Mm SINE Alu 2 134 -13 2 1307 953 284 82 114 chr1 94738312 94738521 -102456911 - MTE2b LTR MaLR -13 366 175 2 1307 782 218 138 138 chr1 94738521 94738821 -102456611 - MTC LTR MaLR 0 421 133 2 1307 1486 40 28 0 chr1 94738821 94738997 -102456435 - B2_Mm2 SINE B2 -14 181 1 2 1307 782 218 138 138 chr1 94738997 94739117 -102456315 - MTC LTR MaLR -289 132 1 2 1307 400 169 15 0 chr1 94739117 94739182 -102456250 - ID4 SINE ID -17 66 1 3 1307 953 284 82 114 chr1 94739182 94739349 -102456083 - MTE2b LTR MaLR -205 174 2 2 1307 2178 153 53 8 chr1 94741207 94741602 -102453830 - MTC LTR MaLR -8 413 1 3 1307 872 292 46 97 chr1 94741729 94742120 -102453312 - MTE2a LTR MaLR 0 379 9 3 1307 286 198 217 0 chr1 94742223 94742329 -102453103 - L1MB4 LINE L1 -293 5887 5759 3 1307 357 24 0 0 chr1 94742362 94742404 -102453028 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1307 369 0 0 0 chr1 94748313 94748354 -102447078 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1307 201 103 0 49 chr1 94753698 94753739 -102441693 + G-rich Low_complexity Low_complexity 6 44 0 3 1307 223 178 0 0 chr1 94756379 94756424 -102439008 + T-rich Low_complexity Low_complexity 1 45 0 3 1307 227 332 109 14 chr1 94759373 94759584 -102435848 + L1M2c LINE L1 2085 2315 -4474 3 1307 243 0 0 0 chr1 94759584 94759611 -102435821 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1307 291 85 0 0 chr1 94759611 94759658 -102435774 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 3 1307 252 0 0 0 chr1 94759700 94759728 -102435704 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1307 1571 170 133 0 chr1 94759956 94760286 -102435146 + ORR1D1 LTR MaLR 1 374 0 3 1307 469 293 229 24 chr1 94760289 94760796 -102434636 + L1M2c LINE L1 2893 3503 -3279 3 1307 804 308 58 54 chr1 94760818 94760947 -102434485 + L1M2c LINE L1 4992 5111 -1671 3 1307 807 152 56 28 chr1 94760947 94761089 -102434343 + B1_Mus1 SINE Alu 3 148 0 3 1307 804 308 58 54 chr1 94761089 94761498 -102433934 + L1M2c LINE L1 5112 5532 -1250 3 1308 1177 222 0 14 chr1 94765288 94765503 -102429929 + B3 SINE B2 3 214 -2 3 1308 969 276 92 26 chr1 94768645 94768994 -102426438 + MTEa LTR MaLR 3 374 -5 3 1308 1277 274 128 12 chr1 94768999 94769405 -102426027 + MTEa-int LTR MaLR 1 453 -1127 3 1308 729 296 51 27 chr1 94769405 94769602 -102425830 + MTEa-int LTR MaLR 1078 1277 -303 3 1308 2007 183 33 8 chr1 94769602 94769966 -102425466 - ORR1D1 LTR MaLR 0 374 2 3 1308 729 307 44 16 chr1 94769966 94770069 -102425363 + MTEa-int LTR MaLR 1278 1340 -240 3 1308 563 274 20 46 chr1 94770073 94770226 -102425206 + RSINE1 SINE B4 3 151 -14 3 1308 357 24 0 0 chr1 94770233 94770275 -102425157 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1308 1182 198 161 36 chr1 94770375 94770705 -102424727 + MTEa LTR MaLR 3 373 -6 3 1308 364 294 219 6 chr1 94770948 94771273 -102424159 - L1M4b LINE L1 -6412 922 529 3 1308 591 182 0 0 chr1 94771801 94771922 -102423510 + GA-rich Low_complexity Low_complexity 2 122 0 3 1308 198 0 0 0 chr1 94772225 94772247 -102423185 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1308 459 0 0 0 chr1 94772247 94772297 -102423135 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1308 282 357 8 37 chr1 94774019 94774153 -102421279 + L1M3 LINE L1 5690 5819 -364 3 1308 500 250 8 41 chr1 94774415 94774536 -102420896 + PB1D10 SINE Alu 1 117 0 3 1308 200 377 0 25 chr1 94775526 94775684 -102419748 + (TGGG)n Simple_repeat Simple_repeat 3 156 0 3 1308 399 273 10 20 chr1 94776897 94776998 -102418434 + PB1D10 SINE Alu 1 100 -17 3 1308 192 40 0 0 chr1 94777397 94777422 -102418010 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1308 225 345 0 105 chr1 94777855 94777914 -102417518 - B4A SINE B4 -173 119 73 3 1308 193 29 59 0 chr1 94777914 94777948 -102417484 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 1308 291 248 0 9 chr1 94777948 94778021 -102417411 - ID SINE ID -220 72 1 3 1308 454 208 180 16 chr1 94778027 94778149 -102417283 - B1_Mur2 SINE Alu -7 142 1 3 1308 2078 191 35 5 chr1 94780898 94781299 -102414133 - MTC LTR MaLR -8 413 1 3 1308 334 184 62 116 chr1 94782176 94782305 -102413127 + MER33 DNA MER1_type 203 324 0 3 1308 194 387 21 0 chr1 94782334 94782427 -102413005 + MER5A DNA MER1_type 4 98 -91 3 1308 411 132 0 0 chr1 94782950 94783018 -102412414 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1308 205 169 0 33 chr1 94783973 94784034 -102411398 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 3 1308 331 258 6 12 chr1 94784129 94784290 -102411142 + (TGGA)n Simple_repeat Simple_repeat 1 160 0 3 1308 296 246 14 0 chr1 94786294 94786363 -102409069 + GA-rich Low_complexity Low_complexity 3 72 0 3 1308 429 20 0 0 chr1 94786740 94786790 -102408642 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1308 390 289 31 8 chr1 94786895 94787024 -102408408 + B1F1 SINE Alu 17 148 -1 3 1308 251 290 16 0 chr1 94787034 94787096 -102408336 + ID4 SINE ID 2 64 -19 3 1308 368 318 118 26 chr1 94787208 94787547 -102407885 + L1MD LINE L1 5270 5639 -720 3 1308 291 358 31 89 chr1 94788655 94788879 -102406553 + L1M5 LINE L1 5607 5817 -362 3 1308 278 28 0 0 chr1 94789362 94789398 -102406034 + U2 snRNA snRNA 1 36 -152 3 1308 279 286 34 112 chr1 94789390 94789448 -102405984 - MER33 DNA MER1_type -40 284 239 3 1308 547 327 68 0 chr1 94789448 94789653 -102405779 - ID_B1 SINE B4 -4 220 2 3 1308 279 286 34 112 chr1 94789653 94789799 -102405633 - MER33 DNA MER1_type -86 238 96 3 1308 237 232 18 18 chr1 94790016 94790073 -102405359 + ID4_ SINE ID 25 81 -2 3 1308 705 181 0 17 chr1 94790208 94790346 -102405086 - B1_Mur2 SINE Alu -1 148 16 3 1308 330 328 46 100 chr1 94790359 94790620 -102404812 + L1M5 LINE L1 2386 2632 -3514 3 1308 954 288 61 12 chr1 94790682 94791010 -102404422 + Lx5 LINE L1 6713 7011 -39 3 1308 738 101 0 0 chr1 94791010 94791119 -102404313 + (GGGGA)n Simple_repeat Simple_repeat 4 112 0 3 1308 817 329 47 20 chr1 94791119 94791142 -102404290 + Lx5 LINE L1 7432 7457 -3 3 1308 261 336 68 8 chr1 94791155 94791272 -102404160 + RSINE1 SINE B4 8 131 -34 3 1308 495 245 35 21 chr1 94791319 94791461 -102403971 + B1F SINE Alu 6 149 0 3 1308 289 233 118 107 chr1 94791590 94791768 -102403664 + L1MD LINE L1 5646 5825 -534 3 1308 1239 35 7 0 chr1 94792146 94792290 -102403142 - B1_Mus2 SINE Alu -1 146 2 3 1308 2163 120 81 0 chr1 94793664 94794021 -102401411 + ORR1B1 LTR MaLR 1 386 -8 3 1308 1141 228 81 8 chr1 94794864 94795112 -102400320 + Lx8 LINE L1 6737 7002 -471 3 1308 1314 81 17 0 chr1 94795112 94795286 -102400146 + B2_Mm1t SINE B2 1 177 -16 3 1308 415 115 308 34 chr1 94795318 94795435 -102399997 + B2_Mm2 SINE B2 47 195 0 3 1308 1108 251 206 22 chr1 94795441 94795839 -102399593 + Lx8 LINE L1 7001 7471 -2 3 1308 215 105 53 0 chr1 94795876 94795914 -102399518 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1308 1929 199 114 12 chr1 94796895 94797316 -102398116 + MT2A LTR ERVL 1 464 -69 3 1308 235 176 70 12 chr1 94797323 94797409 -102398023 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 1308 682 287 29 10 chr1 94797698 94797902 -102397530 - ID_B1 SINE B4 -15 209 2 3 1308 526 319 58 21 chr1 94797963 94798203 -102397229 + MLT1B LTR MaLR 117 365 -25 3 1308 199 336 127 32 chr1 94798408 94798534 -102396898 + MIR SINE MIR 27 164 -112 3 1308 230 333 25 37 chr1 94798567 94798648 -102396784 - MLT1B LTR MaLR -78 312 233 3 1308 183 235 0 0 chr1 94798730 94798781 -102396651 + (TAG)n Simple_repeat Simple_repeat 3 53 0 3 1308 583 228 32 0 chr1 94798788 94798911 -102396521 - B1_Mur1 SINE Alu -16 133 7 3 1308 241 275 101 107 chr1 94798814 94798973 -102396459 - MT2B LTR ERVL -341 260 103 3 1308 398 220 150 0 chr1 94800133 94800233 -102395199 + PB1D7 SINE Alu 3 117 -10 3 1308 3403 45 0 2 chr1 94800598 94800995 -102394437 - MTA_Mm LTR MaLR 0 396 1 3 1308 683 162 63 25 chr1 94802118 94802276 -102393156 + ORR1D1 LTR MaLR 1 164 -210 3 1308 21 0 0 0 chr1 94802873 94802894 -102392538 + GC_rich Low_complexity Low_complexity 1 21 0 3 1308 832 34 184 56 chr1 94803159 94803284 -102392148 - B1_Mm SINE Alu -6 141 1 3 1308 21 0 0 0 chr1 94803771 94803792 -102391640 + GC_rich Low_complexity Low_complexity 1 21 0 3 1308 389 278 17 25 chr1 94806303 94806421 -102389011 - ID_B1 SINE B4 -28 196 80 3 1308 26 64 0 0 chr1 94807347 94807394 -102388038 + GC_rich Low_complexity Low_complexity 1 47 0 3 1308 393 117 0 0 chr1 94807417 94807477 -102387955 + (CCG)n Simple_repeat Simple_repeat 2 61 0 3 1308 35 54 0 0 chr1 94807573 94807629 -102387803 + GC_rich Low_complexity Low_complexity 1 56 0 3 1308 792 32 0 0 chr1 94809985 94810080 -102385352 + (GAAAA)n Simple_repeat Simple_repeat 3 97 0 3 1308 1236 54 0 0 chr1 94810341 94810488 -102384944 - B1_Mus2 SINE Alu 0 147 1 3 1308 191 267 0 135 chr1 94814744 94814848 -102380584 - L2c LINE L2 -178 3209 3120 3 1308 505 303 58 70 chr1 94818119 94818378 -102377054 - ORR1E LTR MaLR -103 256 1 3 1308 1027 233 15 0 chr1 94819506 94819708 -102375724 + B3 SINE B2 5 209 -7 3 1308 294 173 0 0 chr1 94820448 94820500 -102374932 - B3A SINE B2 -143 55 4 3 1308 895 308 53 60 chr1 94820515 94821039 -102374393 - L1MA4 LINE L1 -415 5885 5365 3 1308 720 256 19 12 chr1 94821039 94821201 -102374231 - RSINE1 SINE B4 -2 163 1 3 1308 895 308 53 60 chr1 94821201 94821263 -102374169 - L1MA4 LINE L1 -936 5364 5303 3 1308 1982 115 42 53 chr1 94821296 94821653 -102373779 - ORR1B1 LTR MaLR 0 394 42 3 1308 677 277 100 100 chr1 94821664 94822093 -102373339 - L1MA4 LINE L1 -869 5274 4846 3 1308 423 275 11 140 chr1 94822097 94822216 -102373216 + RSINE1 SINE B4 4 115 -50 3 1308 2496 83 3 58 chr1 94822216 94822562 -102372870 - ORR1A2 LTR MaLR 0 327 1 3 1308 423 275 11 140 chr1 94822562 94822628 -102372804 + RSINE1 SINE B4 116 165 0 3 1308 483 236 196 18 chr1 94822686 94822910 -102372522 - L1MA4 LINE L1 -1306 4834 4571 3 1308 409 291 3 67 chr1 94822913 94823098 -102372334 + MTD LTR MaLR 136 324 -95 3 1308 1529 228 101 8 chr1 94823098 94823474 -102371958 + MTD LTR MaLR 1 411 -8 3 1308 429 132 108 0 chr1 94823474 94823557 -102371875 + MTD LTR MaLR 320 411 -8 3 1308 3658 228 126 69 chr1 94823561 94824751 -102370681 + MTD-int LTR MaLR 1 1258 0 3 1308 990 244 123 21 chr1 94824751 94825036 -102370396 + MTD LTR MaLR 1 314 -105 3 1308 401 273 10 0 chr1 94825142 94825241 -102370191 + MTD LTR MaLR 320 419 0 3 1308 336 302 100 7 chr1 94826559 94826699 -102368733 + MLT1F LTR MaLR 311 463 -85 3 1308 2150 123 27 32 chr1 94827336 94827564 -102367868 + ORR1B2 LTR MaLR 1 234 -133 3 1308 3224 63 5 5 chr1 94827564 94827960 -102367472 + MTA_Mm LTR MaLR 1 396 0 3 1308 2150 123 27 32 chr1 94827960 94828100 -102367332 + ORR1B2 LTR MaLR 235 367 0 3 1308 360 290 11 11 chr1 94828102 94828196 -102367236 - B4A SINE B4 -188 104 11 3 1308 476 215 74 9 chr1 94828957 94829065 -102366367 - PB1D10 SINE Alu -2 115 1 3 1308 1560 20 0 10 chr1 94829256 94829454 -102365978 - MTB LTR MaLR 0 400 205 3 1308 810 140 361 9 chr1 94829502 94829786 -102365646 + MTC LTR MaLR 1 413 -8 3 1308 216 0 0 0 chr1 94830097 94830121 -102365311 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1308 270 0 0 0 chr1 94832167 94832197 -102363235 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1308 537 170 82 149 chr1 94832488 94832682 -102362750 + Lx5 LINE L1 6868 7048 -2 4 1308 401 213 137 16 chr1 94832707 94832831 -102362601 + B3 SINE B2 76 214 -2 4 1308 568 292 7 0 chr1 94833251 94833388 -102362044 + RSINE1 SINE B4 20 157 -8 4 1308 201 143 0 45 chr1 94834898 94834942 -102360490 + T-rich Low_complexity Low_complexity 2 43 0 4 1308 678 134 227 0 chr1 94835378 94835497 -102359935 + B1_Mus2 SINE Alu 1 146 -1 4 1308 231 123 40 40 chr1 94837606 94837682 -102357750 + T-rich Low_complexity Low_complexity 3 78 0 4 1308 1161 49 0 0 chr1 94837805 94837948 -102357484 + B1_Mus1 SINE Alu 6 148 0 4 1308 186 43 0 0 chr1 94837948 94837971 -102357461 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1308 379 252 43 21 chr1 94838019 94838214 -102357218 + B4A SINE B4 18 278 -14 4 1308 1336 215 127 12 chr1 94846689 94847019 -102348413 + MTEa LTR MaLR 12 379 0 4 1308 538 264 156 0 chr1 94847023 94847190 -102348242 + MLT1A0 LTR MaLR 138 330 -35 4 1308 317 295 167 6 chr1 94849098 94849272 -102346160 - L1MEc LINE L1 -1721 4598 4397 4 1308 501 335 103 41 chr1 94849356 94850237 -102345195 - L1MEc LINE L1 -2007 4312 3377 4 1308 319 320 48 8 chr1 94850265 94850391 -102345041 - B1F SINE Alu -16 133 3 4 1308 731 159 0 0 chr1 94850423 94850530 -102344902 + B3 SINE B2 4 110 -106 4 1308 245 279 117 99 chr1 94850590 94850862 -102344570 - L1MC LINE L1 -3011 3135 2853 4 1308 560 248 0 25 chr1 94850862 94850982 -102344450 - PB1D10 SINE Alu 0 117 1 4 1308 245 279 117 99 chr1 94850982 94851051 -102344381 - L1MC LINE L1 -3294 2852 2788 4 1308 1233 61 0 0 chr1 94851085 94851233 -102344199 + B1_Mus1 SINE Alu 1 148 0 4 1308 298 314 34 74 chr1 94851245 94851260 -102344172 - B1_Mur3 SINE Alu -7 142 128 4 1308 499 258 143 12 chr1 94851260 94851421 -102344011 - B3A SINE B2 -16 182 1 4 1308 513 267 12 17 chr1 94851421 94851553 -102343879 - PB1D10 SINE Alu -22 127 1 4 1308 228 299 21 94 chr1 94851469 94851565 -102343867 - MT2B LTR ERVL -360 241 153 4 1308 2975 54 75 0 chr1 94851629 94852001 -102343431 + MTB LTR MaLR 1 400 0 4 1308 7477 86 9 69 chr1 94852001 94853167 -102342265 + MTB-int LTR MaLR 1 1096 -2 4 1308 1457 92 19 0 chr1 94853171 94853378 -102342054 + MTB LTR MaLR 3 213 -194 4 1308 325 284 61 71 chr1 94853502 94853699 -102341733 + RLTR46 LTR ERVK 126 320 0 4 1308 1323 46 126 0 chr1 94853699 94853874 -102341558 + MTB LTR MaLR 204 400 0 4 1308 353 296 68 89 chr1 94854000 94854214 -102341218 - L1MEc LINE L1 -3766 2553 2336 4 1308 240 273 91 0 chr1 94854226 94854303 -102341129 - RSINE1 SINE B4 0 165 82 4 1308 212 298 0 66 chr1 94854384 94854445 -102340987 - B1F2 SINE Alu -92 57 1 4 1308 304 322 108 4 chr1 94854544 94854784 -102340648 - L1MEc LINE L1 -4038 2362 2098 4 1308 240 305 0 0 chr1 94856107 94856166 -102339266 - ID4_ SINE ID -20 63 5 4 1308 748 189 23 0 chr1 94856215 94856347 -102339085 + B1F SINE Alu 1 135 -14 4 1308 1391 97 16 0 chr1 94856622 94856807 -102338625 + B2_Mm2 SINE B2 1 188 -7 4 1308 2484 69 25 0 chr1 94857289 94857608 -102337824 + ORR1A2 LTR MaLR 1 327 0 4 1308 180 0 0 0 chr1 94857998 94858018 -102337414 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1308 718 126 97 40 chr1 94858021 94858145 -102337287 - B1_Mus1 SINE Alu -16 132 2 4 1308 293 213 125 56 chr1 94858430 94858574 -102336858 + MER76 LTR ERVL 2 155 -536 4 1308 246 252 185 67 chr1 94858639 94858758 -102336674 + MER76 LTR ERVL 362 494 -197 4 1308 232 314 115 33 chr1 94858825 94858947 -102336485 + MLT1F2 LTR MaLR 123 254 -306 4 1308 393 254 29 6 chr1 94859607 94859724 -102335708 + MLT1F2 LTR MaLR 431 614 -13 4 1308 321 26 0 0 chr1 94859830 94859868 -102335564 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1308 330 325 124 71 chr1 94859883 94860320 -102335112 - L1MC5 LINE L1 -865 7096 6637 4 1308 1155 88 0 13 chr1 94860577 94860726 -102334706 + B1_Mus1 SINE Alu 2 148 0 4 1308 590 239 64 14 chr1 94860884 94861024 -102334408 + B1_Mur1 SINE Alu 2 148 -1 4 1308 210 279 118 0 chr1 94861084 94861152 -102334280 + PB1D10 SINE Alu 3 78 -39 4 1308 1185 149 52 19 chr1 94861153 94861365 -102334067 - MTC LTR MaLR -7 414 196 4 1308 26 50 0 0 chr1 94861367 94861407 -102334025 + AT_rich Low_complexity Low_complexity 1 40 0 4 1308 34813 66 11 6 chr1 94861567 94867576 -102327856 - L1Md_F2 LINE L1 -2 6580 539 4 1308 1266 164 68 71 chr1 94867576 94867872 -102327560 - MTC LTR MaLR -125 296 2 4 1308 329 322 56 6 chr1 94867954 94868097 -102327335 + B1F SINE Alu 3 149 0 4 1308 252 122 0 0 chr1 94868158 94868199 -102327233 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1308 212 0 0 35 chr1 94868212 94868241 -102327191 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1308 828 119 29 29 chr1 94868242 94868380 -102327052 - B1_Mus1 SINE Alu -10 138 1 4 1308 279 0 0 0 chr1 94869167 94869198 -102326234 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1308 961 123 20 27 chr1 94869198 94869348 -102326084 - B1_Mur4 SINE Alu 0 150 2 4 1308 189 26 51 26 chr1 94871817 94871856 -102323576 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1308 348 207 120 128 chr1 94872008 94872141 -102323291 - MT2B2 LTR ERVL -271 313 182 4 1308 932 73 0 0 chr1 94872035 94872158 -102323274 - B1_Mus1 SINE Alu -24 124 2 4 1308 804 183 138 11 chr1 94873478 94873666 -102321766 - ORR1C2 LTR MaLR 0 384 173 4 1308 678 163 16 36 chr1 94873681 94873930 -102321502 + GA-rich Low_complexity Low_complexity 1 244 0 4 1308 279 299 101 17 chr1 94874813 94874932 -102320500 + MIR SINE MIR 21 149 -59 4 1308 180 0 0 0 chr1 94877571 94877591 -102317841 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1308 314 65 20 79 chr1 94878874 94878975 -102316457 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 4 1308 264 233 82 0 chr1 94881063 94881136 -102314296 - RMER15 LTR ERVL -75 500 422 4 1308 423 276 26 8 chr1 94881985 94882102 -102313330 + RSINE1 SINE B4 12 130 -35 4 1308 1375 72 27 16 chr1 94882178 94882362 -102313070 + B2_Mm2 SINE B2 3 188 -7 4 1308 628 176 49 84 chr1 94882565 94882708 -102312724 + MTC LTR MaLR 2 139 -282 4 1308 6687 209 79 58 chr1 94882708 94882835 -102312597 + Lx6 LINE L1 5674 5789 -1671 4 1308 898 179 14 0 chr1 94882835 94882980 -102312452 + B1_Mur3 SINE Alu 3 149 0 4 1308 6687 209 79 58 chr1 94882980 94884602 -102310830 + Lx6 LINE L1 5790 7460 0 4 1308 306 0 0 0 chr1 94884624 94884658 -102310774 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 4 1308 396 226 128 11 chr1 94884658 94884745 -102310687 + MTC LTR MaLR 136 234 -187 4 1308 1228 220 151 35 chr1 94884941 94885313 -102310119 + MTD LTR MaLR 1 415 -4 4 1308 437 243 49 68 chr1 94885731 94885894 -102309538 + MTC LTR MaLR 207 366 -13 4 1308 715 245 16 26 chr1 94886673 94886862 -102308570 + Lx8 LINE L1 6611 6797 -676 4 1308 1044 101 63 6 chr1 94887866 94888025 -102307407 + B2_Mm2 SINE B2 1 168 -27 4 1308 2345 77 11 113 chr1 94888133 94888239 -102307193 + ORR1A2 LTR MaLR 1 106 -221 4 1308 1133 68 0 33 chr1 94888239 94888392 -102307040 + B1_Mus1 SINE Alu 1 148 0 4 1308 2354 77 11 113 chr1 94888392 94888649 -102306783 + ORR1A2 LTR MaLR 107 327 0 4 1308 242 294 68 45 chr1 94890521 94890653 -102304779 + LTR28 LTR ERV1 441 575 -445 4 1308 210 105 0 0 chr1 94890770 94890808 -102304624 + (G)n Simple_repeat Simple_repeat 1 38 0 4 1308 271 143 0 0 chr1 94891432 94891474 -102303958 - MER58D DNA MER1_type -6 380 339 4 1308 471 293 59 15 chr1 94894531 94894666 -102300766 + ID_B1 SINE B4 84 224 0 4 1308 353 142 333 19 chr1 94895442 94895550 -102299882 - B2_Mm1t SINE B2 -1 192 51 4 1308 1083 147 0 0 chr1 94895607 94895777 -102299655 - B2_Mm2 SINE B2 -25 170 1 4 1309 1517 278 44 15 chr1 94896184 94896589 -102298843 - Lx5 LINE L1 -101 6949 6533 4 1309 2547 182 60 12 chr1 94897227 94898044 -102297388 - RLTR25A LTR ERVK 0 1028 11 4 1309 456 111 0 0 chr1 94899513 94899585 -102295847 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 4 1309 243 0 0 0 chr1 94899585 94899612 -102295820 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1309 337 339 59 20 chr1 94899676 94899929 -102295503 + L1M4 LINE L1 3900 4162 -1984 4 1309 625 223 73 20 chr1 94900048 94900212 -102295220 + B3A SINE B2 27 196 -2 4 1309 1114 89 7 0 chr1 94900212 94900358 -102295074 + B1_Mus1 SINE Alu 1 147 -1 4 1309 437 303 10 75 chr1 94900358 94900393 -102295039 + B3 SINE B2 181 213 -3 4 1309 342 0 0 0 chr1 94900499 94900537 -102294895 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1309 1224 55 0 7 chr1 94901149 94901297 -102294135 + B1_Mm SINE Alu 1 147 0 4 1309 215 383 0 22 chr1 94904655 94904834 -102290598 + CT-rich Low_complexity Low_complexity 3 177 0 4 1309 607 272 141 0 chr1 94906376 94906445 -102288987 - B4 SINE B4 0 292 216 4 1309 288 111 0 0 chr1 94906445 94906490 -102288942 + (TTG)n Simple_repeat Simple_repeat 1 45 0 4 1309 607 272 141 0 chr1 94906490 94906604 -102288828 - B4 SINE B4 -77 215 84 4 1309 526 176 0 0 chr1 94906621 94906712 -102288720 - B1_Mur2 SINE Alu -9 140 50 4 1309 450 239 0 11 chr1 94906709 94906802 -102288630 - B4 SINE B4 -199 93 2 4 1309 229 278 0 40 chr1 94907041 94907116 -102288316 + B4A SINE B4 1 72 -220 4 1309 188 67 0 32 chr1 94907116 94907147 -102288285 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 4 1309 414 0 0 0 chr1 94907147 94907193 -102288239 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1309 1212 35 7 0 chr1 94907223 94907367 -102288065 + B1_Mus1 SINE Alu 2 146 -2 4 1309 1975 104 105 26 chr1 94907834 94908178 -102287254 - MTC LTR MaLR -1 420 50 4 1309 198 71 0 0 chr1 94908197 94908225 -102287207 + (C)n Simple_repeat Simple_repeat 1 28 0 4 1309 351 65 0 0 chr1 94909839 94909885 -102285547 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1309 1137 117 82 11 chr1 94910319 94910501 -102284931 - B2_Mm2 SINE B2 0 195 1 4 1309 387 0 0 0 chr1 94912495 94912538 -102282894 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1309 810 98 256 19 chr1 94915803 94915959 -102279473 - B2_Mm2 SINE B2 -1 194 2 4 1309 329 240 26 13 chr1 94925189 94925265 -102270167 + MER5A DNA MER1_type 42 118 -71 5 1309 22 35 0 0 chr1 94926357 94926386 -102269046 + AT_rich Low_complexity Low_complexity 1 29 0 5 1309 3230 65 4 57 chr1 94926901 94927183 -102268249 + MT2C_Mm LTR ERVL 1 263 -212 5 1309 182 37 37 0 chr1 94927193 94927220 -102268212 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 5 1309 1092 103 0 7 chr1 94927220 94927355 -102268077 - B1_Mus1 SINE Alu -11 137 3 5 1309 3230 65 4 57 chr1 94927355 94927562 -102267870 + MT2C_Mm LTR ERVL 264 464 -11 5 1309 341 144 0 43 chr1 94929323 94929417 -102266015 + CT-rich Low_complexity Low_complexity 1 90 0 5 1309 342 152 0 0 chr1 94931373 94931432 -102264000 + (CCCCAG)n Simple_repeat Simple_repeat 4 62 0 5 1309 189 74 0 0 chr1 94932364 94932391 -102263041 + (CCCTG)n Simple_repeat Simple_repeat 2 28 0 5 1309 255 317 146 27 chr1 94935220 94935405 -102260027 + MLT1C LTR MaLR 228 434 -33 5 1309 237 253 146 21 chr1 94935493 94935615 -102259817 - MIR SINE MIR -148 128 7 5 1309 465 19 0 0 chr1 94948069 94948123 -102247309 + (TCC)n Simple_repeat Simple_repeat 1 54 0 5 1309 441 54 0 0 chr1 94948718 94948774 -102246658 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1309 588 328 78 11 chr1 94949757 94949835 -102245597 + MER74B LTR ERVL 58 142 -480 5 1309 1547 121 4 18 chr1 94949835 94950063 -102245369 - URR1B DNA MER1_type 0 225 1 5 1309 588 328 78 11 chr1 94950063 94950252 -102245180 + MER74B LTR ERVL 143 343 -279 5 1309 233 29 0 29 chr1 94951183 94951218 -102244214 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 5 1309 1212 282 40 46 chr1 94953069 94953152 -102242280 + MTE-int LTR MaLR 98 233 -1502 5 1309 3153 12 0 14 chr1 94953152 94953503 -102241929 + ORR1A0 LTR MaLR 1 346 0 5 1309 1212 289 41 48 chr1 94953503 94953845 -102241587 + MTE-int LTR MaLR 185 564 -1171 5 1309 1498 325 886 2 chr1 94953861 94953979 -102241453 + MTE-int LTR MaLR 741 957 -623 5 1309 384 22 0 0 chr1 94953979 94954024 -102241408 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1309 1498 358 46 17 chr1 94954024 94954591 -102240841 + MTE-int LTR MaLR 958 1547 -33 5 1309 413 256 163 50 chr1 94954718 94954957 -102240475 + ORR1D2 LTR MaLR 87 352 -18 5 1309 1411 105 11 0 chr1 94955744 94955935 -102239497 + B2_Mm1t SINE B2 1 193 0 5 1309 717 118 0 0 chr1 94955935 94956045 -102239387 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 5 1309 507 33 0 0 chr1 94959558 94959619 -102235813 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1309 202 95 23 23 chr1 94963450 94963493 -102231939 + (ATATG)n Simple_repeat Simple_repeat 3 45 0 5 1309 477 218 46 23 chr1 94966805 94966979 -102228453 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1309 292 133 48 12 chr1 94967017 94967101 -102228331 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1309 932 266 42 78 chr1 94967391 94967725 -102227707 + MTEa LTR MaLR 3 324 -55 5 1309 254 233 67 0 chr1 94967896 94967956 -102227476 + MTEa LTR MaLR 316 379 0 5 1309 206 329 0 25 chr1 94976738 94976819 -102218613 - MIR3 SINE MIR -24 184 106 5 1309 317 278 113 0 chr1 94978164 94978261 -102217171 - PB1 SINE Alu -2 125 18 5 1309 504 309 90 90 chr1 94978261 94978361 -102217071 + MLT1C LTR MaLR 112 193 -274 5 1309 258 359 13 33 chr1 94978361 94978511 -102216921 + B1F SINE Alu 3 149 0 5 1309 504 309 90 90 chr1 94978511 94978766 -102216666 + MLT1C LTR MaLR 194 467 0 5 1309 427 358 7 7 chr1 94979292 94979441 -102215991 - Lx7 LINE L1 -457 7239 7091 5 1309 337 244 100 0 chr1 94979446 94979536 -102215896 + Lx7 LINE L1 7237 7335 -361 5 1309 470 161 117 17 chr1 94979582 94979702 -102215730 - Lx4A LINE L1 0 7058 6927 5 1309 275 274 58 25 chr1 94979698 94979818 -102215614 + Lx7 LINE L1 7561 7684 -12 5 1309 288 0 0 0 chr1 94980551 94980583 -102214849 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1309 1162 249 120 44 chr1 94980667 94981014 -102214418 - MTD LTR MaLR 0 419 35 5 1309 1561 129 4 4 chr1 94981014 94981239 -102214193 + URR1B DNA MER1_type 1 225 0 5 1309 1162 249 120 44 chr1 94981239 94981274 -102214158 - MTD LTR MaLR -385 34 8 5 1309 306 0 0 0 chr1 94981355 94981389 -102214043 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1309 770 228 91 32 chr1 94981425 94981611 -102213821 + B3 SINE B2 20 216 0 5 1309 353 343 74 63 chr1 94981761 94982128 -102213304 + L1MEg LINE L1 88 458 -5777 5 1309 1041 220 0 36 chr1 94982377 94982599 -102212833 + B3 SINE B2 3 216 0 5 1309 354 332 38 105 chr1 94982623 94982832 -102212600 + L1MEg LINE L1 1827 2021 -5312 5 1309 527 266 79 17 chr1 94982832 94983019 -102212413 - B3 SINE B2 -4 191 1 5 1309 442 310 169 4 chr1 94983211 94983454 -102211978 + MLT1A0 LTR MaLR 6 288 -77 5 1309 714 258 61 27 chr1 94983591 94983854 -102211578 - L1M2 LINE L1 -1002 5141 4870 5 1309 1017 136 3 11 chr1 94983895 94984177 -102211255 + (TTGG)n Simple_repeat Simple_repeat 1 280 0 5 1309 834 166 0 7 chr1 94984195 94984335 -102211097 - B1_Mur2 SINE Alu 0 149 11 5 1309 781 276 17 17 chr1 94984344 94984580 -102210852 - L1M2 LINE L1 -1258 4885 4650 5 1309 238 330 103 44 chr1 94984582 94984630 -102210802 + YREP_Mm Unknown Unknown 117 279 -1533 5 1309 646 232 0 28 chr1 94984630 94984772 -102210660 - ID_B1 SINE B4 0 224 87 5 1309 238 330 103 44 chr1 94984772 94984785 -102210647 + YREP_Mm Unknown Unknown 280 331 -1481 5 1309 600 254 56 0 chr1 94984912 94985054 -102210378 + B3A SINE B2 1 150 -48 5 1309 325 257 93 7 chr1 94985104 94985204 -102210228 - B3 SINE B2 -106 110 8 5 1309 316 209 70 90 chr1 94985251 94985351 -102210081 - L1M2 LINE L1 -2386 3757 3660 5 1309 722 177 8 0 chr1 94985728 94985852 -102209580 + B1_Mur4 SINE Alu 26 150 0 5 1309 522 0 0 0 chr1 94985864 94985922 -102209510 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1309 231 182 60 0 chr1 94985922 94985977 -102209455 + B1F SINE Alu 23 89 -28 5 1309 405 0 0 0 chr1 94986021 94986066 -102209366 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1309 771 10 78 0 chr1 94986436 94986538 -102208894 - BC1_Mm scRNA scRNA -42 110 1 5 1309 443 312 120 18 chr1 94986939 94987164 -102208268 + L1M5 LINE L1 2705 2952 -3194 5 1309 262 228 17 17 chr1 94987178 94987236 -102208196 + L1MEc LINE L1 27 84 -6316 5 1309 344 336 25 0 chr1 94987491 94987613 -102207819 + PB1 SINE Alu 1 125 -2 5 1309 53 40 0 0 chr1 94987615 94987689 -102207743 + AT_rich Low_complexity Low_complexity 1 74 0 5 1309 441 0 0 0 chr1 94987764 94987813 -102207619 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 5 1309 934 153 12 25 chr1 94987815 94987976 -102207456 - B2_Mm2 SINE B2 -36 159 1 5 1309 325 315 25 93 chr1 94987976 94988137 -102207295 + L1M5 LINE L1 3570 3719 -2427 5 1309 597 235 6 32 chr1 94988175 94988333 -102207099 + RSINE1 SINE B4 8 161 -4 5 1309 225 287 56 128 chr1 94988333 94988364 -102207068 + B2_Mm2 SINE B2 34 186 -9 5 1309 1419 67 17 6 chr1 94988374 94988555 -102206877 + B2_Mm2 SINE B2 2 184 -11 5 1309 364 340 115 44 chr1 94988621 94988960 -102206472 + L1M5 LINE L1 3830 4192 -1954 5 1309 369 0 0 0 chr1 94989247 94989288 -102206144 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1309 425 259 66 16 chr1 94989311 94989489 -102205943 - B4A SINE B4 -73 219 6 5 1309 451 298 110 24 chr1 94990022 94990276 -102205156 + MER44A DNA MER2_type 37 312 -27 5 1309 428 303 24 8 chr1 94990313 94990436 -102204996 + ID_B1 SINE B4 81 205 -19 5 1309 1127 71 45 15 chr1 94990440 94990768 -102204664 + (TAGA)n Simple_repeat Simple_repeat 1 337 0 5 1309 272 236 36 54 chr1 94990769 94990881 -102204551 - RMER12 LTR ERVK -477 845 736 5 1309 229 349 26 44 chr1 94990880 94990994 -102204438 + B4A SINE B4 166 277 -15 5 1309 247 306 0 0 chr1 94991005 94991067 -102204365 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1309 21 26 0 26 chr1 94991073 94991093 -102204339 + AT_rich Low_complexity Low_complexity 1 20 0 5 1309 1242 48 0 0 chr1 94991093 94991240 -102204192 - B1_Mm SINE Alu 0 147 1 5 1309 21 26 0 26 chr1 94991240 94991258 -102204174 + AT_rich Low_complexity Low_complexity 1 18 0 5 1309 210 237 0 0 chr1 94992072 94992110 -102203322 + (CACG)n Simple_repeat Simple_repeat 2 39 0 5 1309 985 160 165 6 chr1 94993702 94993884 -102201548 + B3 SINE B2 1 211 -5 5 1309 215 353 33 16 chr1 94994630 94994751 -102200681 + MIRb SINE MIR 114 236 -32 5 1309 227 303 20 20 chr1 94995004 94995105 -102200327 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1309 367 300 11 148 chr1 94999819 95000000 -102195432 - MTE2b LTR MaLR 0 359 184 5 1309 689 198 142 6 chr1 95000000 95000183 -102195249 - MTEb LTR MaLR -171 208 1 1 1309 697 35 44 0 chr1 95000387 95000500 -102194932 + (TC)n Simple_repeat Simple_repeat 2 119 0 2 1309 256 246 14 14 chr1 95000521 95000591 -102194841 - B4A SINE B4 -222 70 1 3 1309 676 246 18 0 chr1 95001028 95001195 -102194237 - B3 SINE B2 -40 176 7 4 1309 24 67 0 0 chr1 95001288 95001333 -102194099 + AT_rich Low_complexity Low_complexity 1 45 0 5 1309 882 155 0 20 chr1 95001333 95001484 -102193948 - B1_Mur4 SINE Alu 0 150 3 6 1309 873 229 10 15 chr1 95001724 95001919 -102193513 - B3A SINE B2 -4 194 1 7 1309 283 228 62 12 chr1 95002522 95002602 -102192830 - ID_B1 SINE B4 -2 222 139 8 1309 235 327 27 15 chr1 95003308 95003418 -102192014 + ID2 SINE ID 2 108 -44 9 1309 202 339 89 17 chr1 95003490 95003670 -102191762 + MIRb SINE MIR 48 240 -28 1 1309 2200 141 69 54 chr1 95003950 95004416 -102191016 - IAPLTR2_Mm LTR ERVK -2 473 1 1 1309 20292 18 1 2 chr1 95004416 95006778 -102188654 - IAPEz-int LTR ERVK 0 6481 4123 1 1309 905 80 24 0 chr1 95006780 95006905 -102188527 - IAPEz-int LTR ERVK -2770 4910 4783 1 1309 1767 115 4 4 chr1 95006900 95007162 -102188270 - IAPEz-int LTR ERVK -5183 2497 2236 1 1309 440 66 0 32 chr1 95007151 95007214 -102188218 - IAPEz-int LTR ERVK -5062 1419 1359 1 1309 4485 53 7 2 chr1 95007246 95007832 -102187600 - IAPEz-int LTR ERVK -5890 591 3 1 1309 2200 141 69 54 chr1 95007832 95008298 -102187134 - IAPLTR2_Mm LTR ERVK -2 473 1 1 1309 363 294 11 0 chr1 95008558 95008650 -102186782 + MLT1A0 LTR MaLR 45 137 -228 1 1309 256 311 113 16 chr1 95008915 95009039 -102186393 - 7SK RNA RNA -92 239 104 1 1309 2305 157 42 10 chr1 95009047 95009447 -102185985 + MTC LTR MaLR 1 413 -8 1 1309 323 273 0 0 chr1 95009447 95009524 -102185908 - 7SK RNA RNA -245 86 10 1 1309 1562 227 69 39 chr1 95009601 95009991 -102185441 - MTD LTR MaLR -17 402 1 1 1309 1577 182 102 43 chr1 95010503 95010876 -102184556 - Lx9 LINE L1 -388 7256 6862 1 1309 720 212 36 18 chr1 95010869 95011037 -102184395 + Lx9 LINE L1 7306 7476 -168 1 1309 351 0 0 0 chr1 95011038 95011077 -102184355 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1309 522 148 78 0 chr1 95011077 95011192 -102184240 + Lx9 LINE L1 7520 7643 -1 1 1309 192 97 0 0 chr1 95012116 95012147 -102183285 + (CCCCCG)n Simple_repeat Simple_repeat 3 33 0 1 1309 21 36 0 0 chr1 95012666 95012694 -102182738 + AT_rich Low_complexity Low_complexity 1 28 0 2 1309 488 248 0 18 chr1 95012785 95012896 -102182536 + Lx6 LINE L1 7183 7291 -169 2 1309 533 250 23 73 chr1 95012923 95013100 -102182332 + Lx6 LINE L1 7267 7434 -26 2 1309 1368 240 63 48 chr1 95013831 95014370 -102181062 - L1_Rod LINE L1 -1190 4657 4111 2 1309 2074 270 33 33 chr1 95014381 95014549 -102180883 + Lx9 LINE L1 6849 7015 -629 2 1309 943 189 189 14 chr1 95014549 95014730 -102180702 - RMER17C LTR ERVK 0 410 206 2 1309 492 18 0 0 chr1 95014730 95014787 -102180645 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1309 943 189 189 14 chr1 95014787 95014954 -102180478 - RMER17C LTR ERVK -205 205 2 2 1309 2074 270 33 33 chr1 95014954 95015421 -102180011 + Lx9 LINE L1 7016 7484 -160 2 1309 784 55 18 0 chr1 95015944 95016054 -102179378 + (GGGA)n Simple_repeat Simple_repeat 1 112 0 2 1309 278 278 0 27 chr1 95016067 95016141 -102179291 + ID SINE ID 12 83 -141 2 1309 585 286 93 28 chr1 95016225 95016516 -102178916 + L1MA5 LINE L1 5883 6192 -108 2 1309 772 184 23 0 chr1 95016561 95016735 -102178697 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 2 1309 341 266 73 0 chr1 95016927 95017036 -102178396 + L1MA5 LINE L1 6174 6290 -10 2 1309 272 286 13 13 chr1 95017497 95017575 -102177857 + RSINE1 SINE B4 31 108 -57 3 1309 180 0 0 0 chr1 95017611 95017631 -102177801 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1309 3119 28 18 15 chr1 95017703 95018102 -102177330 + MTB LTR MaLR 1 400 0 3 1309 379 283 117 36 chr1 95018866 95019148 -102176284 - L1M5 LINE L1 -538 5624 5321 3 1309 414 0 0 0 chr1 95019169 95019215 -102176217 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 3 1309 543 209 17 25 chr1 95019219 95019337 -102176095 - PB1D9 SINE Alu -1 119 3 3 1309 678 242 37 37 chr1 95019474 95019637 -102175795 - RSINE1 SINE B4 0 165 3 3 1309 252 0 0 0 chr1 95019725 95019753 -102175679 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1309 195 42 0 0 chr1 95022271 95022295 -102173137 + (C)n Simple_repeat Simple_repeat 1 24 0 3 1309 1164 262 49 7 chr1 95022540 95022844 -102172588 - MTE2a LTR MaLR -2 377 61 3 1309 885 251 109 30 chr1 95022836 95023103 -102172329 + MTE2b LTR MaLR 83 370 -9 4 1309 1323 119 4 76 chr1 95023116 95023353 -102172079 - URR1B DNA MER1_type 0 225 6 4 1309 234 0 0 0 chr1 95023716 95023742 -102171690 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1309 1003 140 160 5 chr1 95024059 95024253 -102171179 + URR1A DNA MER1_type 1 224 -2 4 1309 1038 145 0 0 chr1 95026355 95026764 -102168668 + (CA)n Simple_repeat Simple_repeat 1 409 0 4 1310 248 270 22 11 chr1 95028718 95028808 -102166624 + Lx8 LINE L1 7383 7473 0 4 1310 312 48 0 0 chr1 95030282 95030324 -102165108 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1310 329 141 0 14 chr1 95030324 95030396 -102165036 + GA-rich Low_complexity Low_complexity 1 71 0 4 1310 243 0 0 0 chr1 95030695 95030722 -102164710 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1310 375 105 0 0 chr1 95030823 95030880 -102164552 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1310 308 306 7 43 chr1 95031204 95031344 -102164088 - Lx8 LINE L1 -1 7472 7338 5 1310 386 250 224 0 chr1 95031344 95031500 -102163932 + Lx8 LINE L1 7128 7318 -155 5 1310 393 22 0 0 chr1 95033216 95033262 -102162170 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1310 330 26 0 0 chr1 95033417 95033456 -102161976 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1310 2179 108 50 3 chr1 95033461 95033824 -102161608 - Lx2 LINE L1 0 6997 6618 5 1310 203 300 0 0 chr1 95035610 95035690 -102159742 + CT-rich Low_complexity Low_complexity 3 82 0 5 1310 234 0 0 0 chr1 95037044 95037070 -102158362 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 5 1310 213 214 0 0 chr1 95039350 95039392 -102156040 + A-rich Low_complexity Low_complexity 5 46 0 5 1310 419 272 61 9 chr1 95039398 95039513 -102155919 - ID_B1 SINE B4 -22 202 82 5 1310 228 279 15 0 chr1 95043337 95043405 -102152027 - L1M5 LINE L1 -752 5394 5326 5 1310 1347 25 0 0 chr1 95043464 95043623 -102151809 + (TC)n Simple_repeat Simple_repeat 2 160 0 5 1310 216 0 0 0 chr1 95043624 95043648 -102151784 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 6 1310 569 233 7 57 chr1 95043655 95043796 -102151636 - B4A SINE B4 -152 140 7 6 1310 364 388 72 5 chr1 95043837 95044044 -102151388 - L1M5 LINE L1 -900 5246 5026 5 1310 602 337 159 14 chr1 95044071 95044788 -102150644 - L1M5 LINE L1 -1179 4967 4147 5 1310 186 133 0 0 chr1 95044877 95044907 -102150525 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1310 294 143 0 0 chr1 95045162 95045211 -102150221 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 6 1310 430 325 38 29 chr1 95045264 95045502 -102149930 - RLTR16 LTR ERVK -234 271 32 6 1310 278 330 0 60 chr1 95046538 95046638 -102148794 - RMER30 DNA MER1_type -2 200 107 6 1310 643 226 60 20 chr1 95047128 95047277 -102148155 + RSINE1 SINE B4 11 165 0 6 1310 305 140 18 0 chr1 95047277 95047334 -102148098 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1310 28 29 0 0 chr1 95047345 95047380 -102148052 + AT_rich Low_complexity Low_complexity 1 35 0 6 1310 600 203 45 0 chr1 95047390 95047523 -102147909 + B1_Mur1 SINE Alu 9 147 -2 6 1310 267 173 0 0 chr1 95055932 95055984 -102139448 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1310 215 125 25 0 chr1 95058309 95058349 -102137083 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 7 1310 795 161 101 19 chr1 95060589 95060747 -102134685 - URR1A DNA MER1_type 0 226 56 7 1310 251 105 0 0 chr1 95060841 95060879 -102134553 - URR1A DNA MER1_type -188 38 1 7 1310 964 296 140 17 chr1 95061549 95061590 -102133842 - L1MB3 LINE L1 -86 6097 6057 7 1310 417 39 0 0 chr1 95061590 95061641 -102133791 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1310 610 205 81 16 chr1 95061641 95061765 -102133667 - B1_Mur1 SINE Alu -16 133 2 7 1310 964 314 118 19 chr1 95061765 95062660 -102132772 - L1MB3 LINE L1 -121 6059 5063 7 1310 612 270 31 19 chr1 95066182 95066344 -102129088 + RSINE1 SINE B4 2 165 0 7 1310 231 146 0 0 chr1 95067087 95067128 -102128304 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1310 266 240 152 0 chr1 95067363 95067488 -102127944 - L1M5 LINE L1 -2636 3510 3367 7 1310 1245 208 111 23 chr1 95068070 95068419 -102127013 - MTD LTR MaLR -10 369 1 7 1310 252 0 0 0 chr1 95068506 95068534 -102126898 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1310 432 269 114 12 chr1 95068565 95068887 -102126545 - L1MB3 LINE L1 -2 6181 5820 8 1310 1445 53 15 31 chr1 95069070 95069265 -102126167 - B2_Mm2 SINE B2 -3 192 1 8 1310 204 67 0 0 chr1 95071788 95071818 -102123614 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1310 294 29 0 0 chr1 95072907 95072942 -102122490 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 8 1310 1024 146 199 5 chr1 95078487 95078673 -102116759 + URR1A DNA MER1_type 5 226 0 8 1310 237 370 92 32 chr1 95083236 95083454 -102111978 - L1MEd LINE L1 -5297 822 592 8 1310 270 206 37 22 chr1 95083719 95083853 -102111579 + (TATATG)n Simple_repeat Simple_repeat 1 136 0 8 1310 244 233 27 75 chr1 95083883 95083943 -102111489 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 8 1310 486 120 0 0 chr1 95083943 95084018 -102111414 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1310 244 233 27 75 chr1 95084018 95084143 -102111289 + (TATATG)n Simple_repeat Simple_repeat 4 122 0 8 1310 22 0 0 0 chr1 95087304 95087326 -102108106 + GC_rich Low_complexity Low_complexity 1 22 0 9 1310 379 130 0 25 chr1 95087680 95087759 -102107673 + (CGGGG)n Simple_repeat Simple_repeat 5 81 0 9 1310 203 217 69 46 chr1 95088429 95088516 -102106916 - L2c LINE L2 -42 3345 3257 9 1310 1235 78 22 0 chr1 95088682 95088862 -102106570 - B2_Mm2 SINE B2 0 195 12 9 1310 237 293 0 13 chr1 95091254 95091330 -102104102 + B4A SINE B4 1 75 -217 9 1310 781 258 34 136 chr1 95091556 95091647 -102103785 - B4 SINE B4 -1 291 230 9 1310 953 188 104 5 chr1 95091647 95091840 -102103592 - B3 SINE B2 -4 212 1 9 1310 781 258 34 136 chr1 95091840 95092071 -102103361 - B4 SINE B4 -63 229 2 9 1310 2210 73 28 16 chr1 95092526 95092844 -102102588 - RLTRETN_Mm LTR ERVK 0 322 1 9 1310 426 306 130 31 chr1 95093086 95093438 -102101994 - L1MD LINE L1 -644 5520 5127 9 1310 464 253 0 41 chr1 95093483 95093614 -102101818 - B1F SINE Alu -1 119 1 9 1310 1986 241 156 30 chr1 95093911 95094689 -102100743 - RLTR13D6 LTR ERVK -26 876 1 1 1310 1017 181 26 5 chr1 95094828 95095017 -102100415 + ORR1C2 LTR MaLR 6 198 -186 1 1310 309 347 56 31 chr1 95097281 95097477 -102097955 - L1M5 LINE L1 -612 5512 5312 1 1310 502 193 21 0 chr1 95098829 95098969 -102096463 + (TCCA)n Simple_repeat Simple_repeat 4 146 0 1 1310 279 140 0 0 chr1 95098988 95099038 -102096394 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 1 1310 301 309 41 18 chr1 95099589 95099760 -102095672 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 1 1310 231 420 0 0 chr1 95099877 95100039 -102095393 + (TCCA)n Simple_repeat Simple_repeat 4 165 0 1 1310 333 0 0 0 chr1 95100197 95100234 -102095198 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1310 264 30 0 0 chr1 95101545 95101578 -102093854 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1310 1813 182 30 73 chr1 95103291 95103852 -102091580 + RLTR31A_Mm LTR ERVK 1 561 0 1 1310 185 240 133 0 chr1 95113887 95113962 -102081470 + L2a LINE L2 3030 3114 -312 1 1310 1344 115 16 10 chr1 95115538 95115731 -102079701 - B2_Mm2 SINE B2 -1 194 1 1 1310 849 133 109 60 chr1 95115743 95115927 -102079505 - B2_Mm2 SINE B2 -1 194 2 1 1310 180 313 48 68 chr1 95116633 95116736 -102078696 - L3 LINE CR1 -2025 2464 2364 1 1310 237 65 0 0 chr1 95118760 95118791 -102076641 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 1 1310 978 244 52 0 chr1 95118792 95119005 -102076427 - ID_B1 SINE B4 0 224 1 1 1310 407 318 55 8 chr1 95119327 95119450 -102075982 + B4A SINE B4 99 227 -65 1 1310 836 241 31 20 chr1 95119450 95119645 -102075787 + B3 SINE B2 1 197 -19 1 1310 214 316 0 0 chr1 95119762 95119819 -102075613 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1310 275 267 13 13 chr1 95120058 95120134 -102075298 + CT-rich Low_complexity Low_complexity 4 79 0 1 1310 1000 76 20 27 chr1 95124826 95124974 -102070458 + B1_Mur4 SINE Alu 4 150 0 1 1310 468 0 0 0 chr1 95130031 95130083 -102065349 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1310 180 333 26 26 chr1 95130376 95130453 -102064979 - L2b LINE L2 -22 3353 3277 1 1310 693 129 177 0 chr1 95130908 95131032 -102064400 - B1_Mm SINE Alu 0 147 2 1 1310 207 342 8 17 chr1 95133698 95133817 -102061615 + (CCA)n Simple_repeat Simple_repeat 3 120 0 1 1310 3359 43 8 0 chr1 95135867 95136262 -102059170 - MTB LTR MaLR 0 400 3 1 1310 231 293 71 24 chr1 95136655 95136823 -102058609 - L1MEc LINE L1 -3986 2414 2239 1 1310 997 220 59 5 chr1 95136807 95137026 -102058406 - Lx7 LINE L1 -1165 6531 6301 1 1310 505 334 165 31 chr1 95137023 95137793 -102057639 - L1MEc LINE L1 -4304 2096 1209 1 1310 465 19 0 0 chr1 95137793 95137847 -102057585 + (CTG)n Simple_repeat Simple_repeat 1 54 0 1 1310 505 334 165 31 chr1 95137847 95137880 -102057552 - L1MEc LINE L1 -5192 1208 1185 1 1310 624 268 21 7 chr1 95137905 95138048 -102057384 - RSINE1 SINE B4 -17 148 4 1 1310 1402 229 102 40 chr1 95138096 95138470 -102056962 - Lx6 LINE L1 0 7460 7064 1 1310 2936 237 111 3 chr1 95138490 95139230 -102056202 - Lx7 LINE L1 -897 6799 5980 1 1310 1588 151 7 21 chr1 95139239 95139529 -102055903 - Lx7 LINE L1 -24 5856 5571 1 1310 261 296 12 12 chr1 95139612 95139694 -102055738 - ID4 SINE ID 0 83 2 1 1310 474 313 0 0 chr1 95139694 95139809 -102055623 - PB1D10 SINE Alu -2 115 1 1 1310 315 181 0 0 chr1 95139883 95139955 -102055477 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1310 591 250 69 0 chr1 95139959 95140119 -102055313 - B4A SINE B4 0 292 122 1 1310 1143 260 109 31 chr1 95140500 95140885 -102054547 - MTD LTR MaLR -4 415 1 1 1310 764 200 94 6 chr1 95141197 95141368 -102054064 - B4 SINE B4 -104 188 3 1 1310 261 0 0 0 chr1 95141375 95141404 -102054028 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1310 279 0 0 0 chr1 95143446 95143477 -102051955 + (TGG)n Simple_repeat Simple_repeat 1 31 0 1 1310 737 230 90 2 chr1 95144943 95145158 -102050274 - L1MA8 LINE L1 -267 6033 5803 1 1310 419 329 41 14 chr1 95145218 95145363 -102050069 + RSINE1 SINE B4 17 165 0 1 1310 259 321 0 24 chr1 95145382 95145465 -102049967 + B4A SINE B4 212 292 0 1 1310 880 181 43 32 chr1 95145559 95145747 -102049685 + Lx9 LINE L1 7284 7473 -171 1 1310 8665 50 3 5 chr1 95145771 95147617 -102047815 - L1Md_F2 LINE L1 -8 6574 4730 1 1310 518 168 90 7 chr1 95147614 95147758 -102047674 + Lx9 LINE L1 7488 7643 -1 1 1310 285 302 138 0 chr1 95147870 95147986 -102047446 - B4A SINE B4 -96 196 65 1 1310 448 255 150 0 chr1 95148258 95148435 -102046997 - LTR40c LTR ERVL -207 255 59 1 1310 361 256 21 9 chr1 95148646 95148761 -102046671 - L1MEe LINE L1 -3739 2407 2290 1 1310 890 282 141 45 chr1 95148889 95149394 -102046038 + RMER21B LTR ERV1 1 553 -289 1 1310 419 120 18 44 chr1 95150018 95150131 -102045301 + CT-rich Low_complexity Low_complexity 2 111 0 1 1310 1684 266 107 4 chr1 95150354 95150811 -102044621 + Lx5 LINE L1 6538 7041 -9 1 1310 1199 106 83 0 chr1 95150835 95151015 -102044417 + B2_Mm2 SINE B2 1 195 0 1 1310 636 277 112 9 chr1 95152092 95152307 -102043125 - MLT1A0 LTR MaLR -21 344 108 1 1310 255 337 41 59 chr1 95152351 95152521 -102042911 - MIRc SINE MIR -101 167 1 1 1310 312 347 22 60 chr1 95153598 95153782 -102041650 - B4A SINE B4 -113 179 3 1 1310 543 289 7 7 chr1 95153826 95153969 -102041463 - ID_B1 SINE B4 0 224 82 1 1311 21 0 0 0 chr1 95159505 95159526 -102035906 + AT_rich Low_complexity Low_complexity 1 21 0 1 1311 588 189 88 0 chr1 95159556 95159703 -102035729 - RCHARR1 DNA MER1_type -28 946 787 1 1311 606 241 49 7 chr1 95159703 95159845 -102035587 + B1_Mur1 SINE Alu 1 148 -1 1 1311 1086 160 29 0 chr1 95159842 95160048 -102035384 - RCHARR1 DNA MER1_type -176 798 587 1 1311 927 303 69 9 chr1 95160046 95160379 -102035053 - RCHARR1 DNA MER1_type -621 353 1 1 1311 183 42 0 0 chr1 95160527 95160551 -102034881 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1311 671 222 102 0 chr1 95160601 95160777 -102034655 + B2_Mm2 SINE B2 1 194 -1 1 1311 424 153 75 84 chr1 95160816 95160923 -102034509 + MT2B LTR ERVL 152 257 -344 1 1311 1003 86 0 0 chr1 95160829 95160968 -102034464 + B1_Mm SINE Alu 9 147 0 1 1311 1728 21 0 0 chr1 95162593 95162786 -102032646 - B2_Mm1a SINE B2 0 193 1 1 1311 394 269 38 9 chr1 95162990 95163095 -102032337 + PB1 SINE Alu 3 110 -17 1 1311 31 0 0 0 chr1 95163669 95163700 -102031732 + AT_rich Low_complexity Low_complexity 1 31 0 1 1311 399 344 131 55 chr1 95163716 95164202 -102031230 + L1MEc LINE L1 929 1461 -4939 1 1311 528 219 164 45 chr1 95164202 95164379 -102031053 + B3A SINE B2 1 198 0 1 1311 399 344 131 55 chr1 95164379 95164474 -102030958 + L1MEc LINE L1 1462 1554 -4846 1 1311 396 0 0 0 chr1 95164531 95164575 -102030857 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1311 1206 43 0 0 chr1 95164575 95164714 -102030718 - B1_Mus1 SINE Alu -8 140 2 1 1311 3013 141 175 28 chr1 95164714 95165313 -102030119 - RMER6C LTR ERVK -3 687 1 1 1311 574 118 29 0 chr1 95165407 95165509 -102029923 + B1_Mur3 SINE Alu 44 148 -1 1 1311 226 217 0 28 chr1 95165511 95165582 -102029850 + A-rich Low_complexity Low_complexity 2 70 0 1 1311 364 306 70 74 chr1 95165773 95165822 -102029610 + L1ME1 LINE L1 5438 5489 -690 1 1311 1032 82 0 7 chr1 95165822 95165958 -102029474 + B1_Mus2 SINE Alu 1 135 -12 1 1311 216 0 0 0 chr1 95165959 95165983 -102029449 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1311 364 306 70 74 chr1 95165983 95166160 -102029272 + L1ME1 LINE L1 5490 5664 -515 1 1311 514 331 124 22 chr1 95166173 95166252 -102029180 + L1ME1 LINE L1 5744 5849 -330 1 1311 351 0 0 0 chr1 95166252 95166291 -102029141 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1311 514 331 124 22 chr1 95166291 95166581 -102028851 + L1ME1 LINE L1 5850 6151 -28 1 1311 258 304 59 25 chr1 95166647 95166765 -102028667 + L1MEc LINE L1 2486 2607 -3712 1 1311 1154 88 0 7 chr1 95166770 95166919 -102028513 + B1_Mus1 SINE Alu 1 148 0 1 1311 371 20 39 0 chr1 95166922 95166973 -102028459 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1311 1298 101 17 0 chr1 95167319 95167497 -102027935 - B2_Mm2 SINE B2 -14 181 1 1 1311 603 27 0 0 chr1 95167940 95168013 -102027419 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1311 288 0 0 0 chr1 95168013 95168045 -102027387 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1311 192 77 0 0 chr1 95168332 95168358 -102027074 + (G)n Simple_repeat Simple_repeat 1 26 0 1 1311 217 157 59 0 chr1 95168982 95169033 -102026399 - L2 LINE L2 -1381 2038 1985 1 1311 25 0 0 0 chr1 95169239 95169264 -102026168 + GC_rich Low_complexity Low_complexity 1 25 0 1 1311 1215 61 0 0 chr1 95169683 95169830 -102025602 + B1_Mus2 SINE Alu 1 147 0 1 1311 318 80 0 0 chr1 95169832 95169882 -102025550 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1311 270 0 0 0 chr1 95170339 95170369 -102025063 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1311 1978 171 54 0 chr1 95171370 95171722 -102023710 - ORR1D1 LTR MaLR 0 374 4 1 1311 325 288 132 38 chr1 95173947 95174106 -102021326 + L1ME3 LINE L1 799 972 -5270 1 1311 490 294 113 14 chr1 95174257 95174619 -102020813 + L1ME3 LINE L1 3633 4030 -2116 1 1311 359 151 27 0 chr1 95175179 95175252 -102020180 + (CATA)n Simple_repeat Simple_repeat 2 76 0 1 1311 466 338 128 58 chr1 95175260 95175954 -102019478 + L1ME3 LINE L1 5119 5859 -303 1 1311 498 153 0 26 chr1 95176123 95176237 -102019195 + GA-rich Low_complexity Low_complexity 1 111 0 1 1311 643 129 20 0 chr1 95176237 95176338 -102019094 + B1F2 SINE Alu 41 143 -6 1 1311 23 0 0 0 chr1 95176338 95176361 -102019071 + AT_rich Low_complexity Low_complexity 1 23 0 1 1311 755 208 130 5 chr1 95176492 95176676 -102018756 - B3 SINE B2 -9 207 1 1 1311 207 242 0 46 chr1 95178130 95178195 -102017237 + CT-rich Low_complexity Low_complexity 4 65 0 1 1311 312 231 98 11 chr1 95185250 95185342 -102010090 - L1MC4 LINE L1 -4698 1517 1418 1 1311 260 302 34 0 chr1 95185616 95185720 -102009712 + L1M2 LINE L1 4812 4923 -1223 1 1311 318 295 0 0 chr1 95186358 95186480 -102008952 + (CA)n Simple_repeat Simple_repeat 1 122 0 1 1311 1382 55 55 6 chr1 95186703 95186885 -102008547 - B2_Mm2 SINE B2 -4 191 1 1 1311 256 221 131 39 chr1 95187067 95187181 -102008251 + MIR SINE MIR 36 162 -114 1 1311 224 354 182 9 chr1 95187422 95187738 -102007694 - L2a LINE L2 -298 3128 2742 2 1311 505 268 71 13 chr1 95187974 95188212 -102007220 - L1MEc LINE L1 -3935 2465 2214 2 1311 366 312 69 0 chr1 95188400 95188589 -102006843 - L1MEc LINE L1 -4552 1848 1647 2 1311 328 255 117 0 chr1 95188685 95188779 -102006653 - MTEb LTR MaLR -222 157 53 2 1311 371 238 103 44 chr1 95188980 95188992 -102006440 - B4 SINE B4 -68 224 149 2 1311 557 159 124 0 chr1 95188992 95189108 -102006324 - B1_Mus1 SINE Alu -14 134 5 2 1311 237 304 43 9 chr1 95189306 95189422 -102006010 - L1MEc LINE L1 -5227 1173 1054 2 1311 1326 259 60 26 chr1 95190632 95190981 -102004451 - MTD LTR MaLR 0 419 59 2 1311 228 305 35 35 chr1 95190910 95190995 -102004437 + MTD LTR MaLR 59 143 -276 2 1311 264 238 0 100 chr1 95191048 95191118 -102004314 - MTD LTR MaLR -353 66 4 2 1311 6230 60 1 5 chr1 95191213 95192000 -102003432 - L1Md_F2 LINE L1 0 6582 5799 2 1311 252 0 0 0 chr1 95192129 95192157 -102003275 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1311 454 356 62 6 chr1 95195063 95195224 -102000208 - MER58A DNA MER1_type -43 181 12 2 1311 308 221 189 0 chr1 95196824 95196919 -101998513 - MER20 DNA MER1_type -4 215 103 2 1311 333 0 0 0 chr1 95196931 95196968 -101998464 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1311 234 91 0 0 chr1 95198045 95198078 -101997354 + (TCC)n Simple_repeat Simple_repeat 2 34 0 2 1311 407 262 83 44 chr1 95198695 95198875 -101996557 - B4 SINE B4 -61 231 45 2 1311 230 289 106 60 chr1 95198866 95199017 -101996415 + YREP_Mm Unknown Unknown 137 294 -1518 2 1311 837 126 14 49 chr1 95198896 95199038 -101996394 - B1_Mm SINE Alu -2 145 9 2 1311 615 235 23 0 chr1 95199547 95199679 -101995753 + RSINE1 SINE B4 2 136 -29 2 1311 841 290 97 22 chr1 95202830 95203190 -101992242 + RMER5 LTR ERV1 70 456 -78 2 1311 252 0 0 0 chr1 95203209 95203237 -101992195 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1311 379 307 17 34 chr1 95203994 95204112 -101991320 + RSINE1 SINE B4 5 120 -45 2 1311 273 89 0 0 chr1 95204112 95204157 -101991275 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2 1311 3366 53 2 0 chr1 95204327 95204726 -101990706 - MTB LTR MaLR 0 400 1 2 1311 222 37 0 0 chr1 95205313 95205340 -101990092 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2 1311 345 43 0 0 chr1 95205342 95205389 -101990043 - B1_Mur4 SINE Alu 0 150 104 2 1311 1234 68 0 0 chr1 95205850 95205997 -101989435 + B1_Mus1 SINE Alu 1 147 -1 2 1311 21 36 0 0 chr1 95206091 95206119 -101989313 + AT_rich Low_complexity Low_complexity 1 28 0 2 1311 793 214 14 7 chr1 95206220 95206361 -101989071 + B1_Mur1 SINE Alu 1 142 -7 2 1311 2569 126 29 36 chr1 95207738 95208159 -101987273 + MTD LTR MaLR 1 418 -1 2 1311 711 318 99 16 chr1 95208457 95208770 -101986662 + MLT1A LTR MaLR 23 361 -13 2 1311 654 207 25 0 chr1 95209980 95210097 -101985335 + B3 SINE B2 1 120 -96 2 1311 1484 195 84 3 chr1 95210097 95210428 -101985004 - MTD LTR MaLR 0 419 1 2 1311 460 189 61 31 chr1 95210428 95210526 -101984906 + B3 SINE B2 116 216 0 2 1311 1163 95 0 0 chr1 95211798 95211945 -101983487 - B1_Mus2 SINE Alu 0 147 1 2 1311 376 297 0 21 chr1 95212021 95212162 -101983270 + (CATA)n Simple_repeat Simple_repeat 2 139 0 2 1311 521 202 0 0 chr1 95212201 95212290 -101983142 - PB1D10 SINE Alu -21 96 8 2 1311 282 261 23 139 chr1 95212202 95212331 -101983101 - MT2B LTR ERVL -350 251 138 2 1311 303 28 0 0 chr1 95212494 95212530 -101982902 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 2 1311 198 0 0 0 chr1 95214750 95214772 -101980660 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1311 538 357 51 0 chr1 95214975 95215132 -101980300 + RSINE1 SINE B4 1 165 0 2 1311 222 365 169 16 chr1 95214980 95215164 -101980268 + B3 SINE B2 5 216 0 2 1311 602 182 165 0 chr1 95215166 95215287 -101980145 - B1_Mur2 SINE Alu -7 142 2 2 1311 26 0 0 0 chr1 95215298 95215324 -101980108 + AT_rich Low_complexity Low_complexity 1 26 0 2 1311 560 294 54 7 chr1 95215548 95215695 -101979737 + RSINE1 SINE B4 2 155 -10 2 1311 216 0 0 0 chr1 95220258 95220282 -101975150 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1311 1466 69 11 0 chr1 95221379 95221568 -101973864 + B2_Mm1t SINE B2 1 191 -2 2 1311 1111 207 142 68 chr1 95224456 95224739 -101970693 + MTE2b LTR MaLR 1 322 -57 2 1311 804 115 0 0 chr1 95224739 95224861 -101970571 + (TC)n Simple_repeat Simple_repeat 2 123 0 2 1311 1111 72 0 0 chr1 95224864 95225003 -101970429 - B1_Mus1 SINE Alu -8 140 2 2 1311 1111 207 142 68 chr1 95225003 95225068 -101970364 + MTE2b LTR MaLR 323 379 0 2 1311 273 315 121 6 chr1 95225071 95225237 -101970195 + LTR33A_ LTR ERVL 325 509 -22 2 1311 526 239 49 14 chr1 95225255 95225399 -101970033 + B1_Mur3 SINE Alu 1 149 0 2 1311 213 65 0 0 chr1 95225399 95225430 -101970002 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1311 715 200 271 0 chr1 95225841 95226011 -101969421 + B3 SINE B2 1 216 0 2 1311 831 253 144 25 chr1 95226513 95226797 -101968635 + MLT2B3 LTR ERVL 61 378 -176 2 1311 953 69 0 81 chr1 95227085 95227259 -101968173 + Lx3_Mus LINE L1 6850 7009 0 2 1311 1453 78 16 10 chr1 95227557 95227751 -101967681 + B2_Mm2 SINE B2 1 195 0 2 1311 286 248 123 28 chr1 95227928 95228065 -101967367 - MIRb SINE MIR -76 192 38 2 1311 275 286 99 57 chr1 95228491 95228632 -101966800 + MLT2B3 LTR ERVL 1 147 -407 2 1311 558 297 45 38 chr1 95229012 95229299 -101966133 + B4A SINE B4 4 292 0 2 1311 200 333 0 0 chr1 95229301 95229352 -101966080 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1311 1468 184 126 27 chr1 95229352 95229702 -101965730 + RLTR12B LTR ERVK 1 328 -249 2 1311 2784 200 89 22 chr1 95229702 95230300 -101965132 + Lx5 LINE L1 6409 7046 -4 2 1311 670 130 83 0 chr1 95230319 95230427 -101965005 + RLTR12B LTR ERVK 304 420 -108 2 1311 252 190 132 48 chr1 95230545 95230628 -101964804 + RLTR12B LTR ERVK 413 502 -26 2 1311 903 99 7 40 chr1 95231426 95231574 -101963858 + URR1B DNA MER1_type 83 225 0 2 1311 424 237 201 29 chr1 95231714 95231853 -101963579 + RSINE1 SINE B4 3 165 0 2 1311 252 308 49 7 chr1 95232785 95232929 -101962503 + L2 LINE L2 1925 2074 -1345 2 1311 321 396 90 0 chr1 95234941 95235085 -101960347 + MER115 DNA Tip100 92 248 -445 2 1311 519 326 87 41 chr1 95235103 95235471 -101959961 + RLTR12B LTR ERVK 11 395 -133 2 1311 992 108 0 21 chr1 95235700 95235842 -101959590 + B1_Mur3 SINE Alu 11 149 0 2 1311 452 262 95 0 chr1 95235897 95236023 -101959409 + ID_B1 SINE B4 87 224 0 2 1311 1126 66 0 0 chr1 95236356 95236493 -101958939 + B1_Mus1 SINE Alu 1 137 -11 2 1311 447 307 12 41 chr1 95236664 95236834 -101958598 + RSINE1 SINE B4 1 165 0 2 1311 201 270 32 0 chr1 95237343 95237406 -101958026 + GA-rich Low_complexity Low_complexity 4 68 0 2 1311 464 45 15 0 chr1 95237563 95237630 -101957802 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1311 737 235 74 70 chr1 95237799 95238014 -101957418 - B3 SINE B2 0 216 1 2 1311 216 97 0 0 chr1 95238080 95238111 -101957321 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1311 549 186 113 17 chr1 95238119 95238234 -101957198 - RSINE1 SINE B4 -38 127 2 2 1311 200 0 100 0 chr1 95238263 95238293 -101957139 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1311 256 320 18 91 chr1 95238320 95238430 -101957002 - ID_B1 SINE B4 -105 119 18 2 1311 709 310 49 24 chr1 95238932 95239137 -101956295 + B4A SINE B4 1 210 -82 2 1311 315 0 0 0 chr1 95241554 95241589 -101953843 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1311 236 136 220 0 chr1 95241648 95241707 -101953725 - B1_Mur1 SINE Alu 0 149 78 2 1311 198 291 149 11 chr1 95242007 95242094 -101953338 - MIR SINE MIR -70 192 94 2 1311 806 176 22 0 chr1 95243264 95243400 -101952032 - B1_Mur1 SINE Alu -6 143 5 2 1311 650 289 131 15 chr1 95244419 95244679 -101950753 - B4 SINE B4 0 292 3 2 1311 292 214 183 14 chr1 95244706 95244777 -101950655 - ID4_ SINE ID 0 83 1 2 1311 206 184 20 20 chr1 95245518 95245568 -101949864 + GA-rich Low_complexity Low_complexity 2 51 0 2 1311 26 0 0 0 chr1 95245611 95245637 -101949795 + AT_rich Low_complexity Low_complexity 1 26 0 2 1311 361 327 0 93 chr1 95245696 95245767 -101949665 + PB1D10 SINE Alu 1 71 -46 2 1311 759 209 147 21 chr1 95245767 95245958 -101949474 + B3 SINE B2 2 216 0 2 1311 361 327 0 93 chr1 95245958 95246004 -101949428 + PB1D10 SINE Alu 72 107 -10 2 1311 296 256 182 0 chr1 95248613 95248734 -101946698 - ID_B1 SINE B4 0 224 82 2 1311 189 0 0 0 chr1 95249782 95249803 -101945629 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 2 1311 357 171 216 0 chr1 95249803 95249891 -101945541 - B1_Mur4 SINE Alu -12 138 32 2 1311 463 146 150 40 chr1 95249914 95250014 -101945418 - PB1D9 SINE Alu 0 120 10 2 1311 765 130 120 15 chr1 95250507 95250640 -101944792 + B1_Mur3 SINE Alu 2 148 -1 2 1311 25 68 0 27 chr1 95251205 95251239 -101944193 + AT_rich Low_complexity Low_complexity 1 33 0 2 1311 1185 48 21 0 chr1 95251239 95251384 -101944048 + B1_Mus1 SINE Alu 1 148 0 2 1311 25 68 0 27 chr1 95251384 95251424 -101944008 + AT_rich Low_complexity Low_complexity 1 40 0 2 1311 838 204 42 65 chr1 95251426 95251641 -101943791 + B3 SINE B2 2 211 -5 2 1311 771 192 111 72 chr1 95251669 95251877 -101943555 + B3 SINE B2 1 216 0 2 1311 548 272 12 81 chr1 95252070 95252230 -101943202 - B1_Mur2 SINE Alu 0 149 1 2 1311 1381 101 11 0 chr1 95252240 95252429 -101943003 - B2_Mm1t SINE B2 -2 191 1 2 1311 421 214 37 55 chr1 95252723 95252832 -101942600 + RSINE1 SINE B4 8 114 -51 2 1311 503 223 51 9 chr1 95252826 95252987 -101942445 + B3 SINE B2 9 211 -5 3 1311 670 48 0 0 chr1 95253028 95253112 -101942320 + B1_Mm SINE Alu 64 147 0 3 1311 525 287 12 48 chr1 95253144 95253309 -101942123 + RSINE1 SINE B4 3 161 -4 3 1311 910 205 47 33 chr1 95253489 95253701 -101941731 - B3 SINE B2 -1 215 1 3 1311 1114 62 7 14 chr1 95253769 95253916 -101941516 - B1_Mus2 SINE Alu -1 146 1 3 1311 546 306 140 0 chr1 95254067 95254289 -101941143 - B4A SINE B4 -6 286 34 3 1311 3491 23 5 0 chr1 95254855 95255249 -101940183 - MTA_Mm LTR MaLR 0 396 1 3 1311 269 151 19 0 chr1 95255298 95255351 -101940081 + CT-rich Low_complexity Low_complexity 1 54 0 3 1311 303 212 50 0 chr1 95255446 95255526 -101939906 - MamRep1161 DNA TcMar -654 303 220 3 1311 252 86 0 0 chr1 95255548 95255583 -101939849 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 3 1311 277 392 29 0 chr1 95255830 95255932 -101939500 + B1_Mur3 SINE Alu 1 105 -44 3 1311 480 216 11 177 chr1 95256402 95256428 -101939004 + ID_B1 SINE B4 70 224 0 3 1311 797 163 12 81 chr1 95256428 95256588 -101938844 + B1_Mur3 SINE Alu 1 149 0 3 1311 253 226 12 12 chr1 95256590 95256675 -101938757 + GA-rich Low_complexity Low_complexity 3 87 0 3 1311 327 362 66 42 chr1 95257593 95257626 -101937806 - L1MEf LINE L1 -4954 1461 1429 3 1311 686 234 50 0 chr1 95257626 95257767 -101937665 - B1_Mur2 SINE Alu -1 148 1 3 1311 327 362 66 42 chr1 95257767 95257900 -101937532 - L1MEf LINE L1 -4987 1428 1291 3 1311 247 217 69 0 chr1 95257974 95258050 -101937382 - L1MEf LINE L1 -5090 1219 1082 3 1311 357 338 90 24 chr1 95258129 95258341 -101937091 - B4A SINE B4 -10 282 57 3 1311 759 276 119 22 chr1 95258373 95258651 -101936781 - MTEa LTR MaLR -72 307 3 3 1311 650 255 10 61 chr1 95258712 95258908 -101936524 - B3A SINE B2 -8 190 5 3 1311 312 291 115 92 chr1 95259556 95259817 -101935615 + L2 LINE L2 2493 2759 -660 3 1311 509 184 39 0 chr1 95259831 95259934 -101935498 + U6 snRNA snRNA 1 107 0 3 1311 346 288 85 31 chr1 95260625 95260754 -101934678 + MER63B DNA AcHobo 299 434 -2 3 1311 458 138 0 94 chr1 95260827 95260842 -101934590 + MT2B LTR ERVL 154 159 -442 3 1311 654 101 18 0 chr1 95260842 95260950 -101934482 + B1_Mus2 SINE Alu 3 120 0 3 1311 665 86 276 0 chr1 95260967 95261072 -101934360 + B1_Mus1 SINE Alu 2 135 -13 3 1311 25 51 0 0 chr1 95262054 95262093 -101933339 + AT_rich Low_complexity Low_complexity 1 39 0 3 1311 297 251 246 23 chr1 95262490 95262661 -101932771 - MER3 DNA MER1_type 0 209 1 3 1311 1192 48 0 14 chr1 95263291 95263439 -101931993 - B1_Mus1 SINE Alu -1 147 2 3 1311 262 232 107 44 chr1 95263447 95263598 -101931834 + L1_Mm LINE L1 3663 3833 -2313 3 1311 480 215 50 36 chr1 95263609 95263749 -101931683 + ID_B1 SINE B4 83 224 0 3 1311 265 265 14 14 chr1 95263750 95263819 -101931613 + ID4_ SINE ID 1 69 -14 3 1311 474 297 51 19 chr1 95263986 95264144 -101931288 - RSINE1 SINE B4 -2 163 1 3 1311 369 281 10 10 chr1 95264211 95264308 -101931124 + B4A SINE B4 2 98 -194 3 1311 244 195 24 0 chr1 95264355 95264396 -101931036 + ID4_ SINE ID 15 56 -27 3 1311 282 262 99 12 chr1 95264468 95264549 -101930883 - ORR1E LTR MaLR -10 369 282 3 1311 534 245 29 0 chr1 95264603 95264705 -101930727 - ORR1E LTR MaLR -222 137 33 3 1311 337 300 75 41 chr1 95264787 95264933 -101930499 - MER104 DNA Tc2 0 181 31 3 1311 614 280 13 0 chr1 95265267 95265417 -101930015 + RSINE1 SINE B4 4 155 -10 3 1311 392 262 0 0 chr1 95265546 95265626 -101929806 + ID4 SINE ID 3 82 -1 3 1311 326 264 168 21 chr1 95266093 95266236 -101929196 + MLT1D LTR MaLR 326 489 -16 3 1311 697 193 193 0 chr1 95267361 95267542 -101927890 - B3 SINE B2 0 216 1 3 1311 473 308 6 81 chr1 95267752 95267925 -101927507 + RSINE1 SINE B4 2 161 -4 3 1311 288 200 365 0 chr1 95268029 95268114 -101927318 + PB1D10 SINE Alu 1 116 -1 3 1311 897 161 7 0 chr1 95268137 95268274 -101927158 + B1_Mus2 SINE Alu 10 147 0 3 1311 667 22 44 0 chr1 95268523 95268614 -101926818 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 3 1311 1173 48 7 27 chr1 95268624 95268774 -101926658 - B1_Mus2 SINE Alu 0 147 1 3 1311 318 148 0 0 chr1 95271399 95271453 -101923979 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 3 1311 182 152 61 0 chr1 95271582 95271615 -101923817 + MIRc SINE MIR 114 148 -120 3 1311 1922 106 46 3 chr1 95272166 95272469 -101922963 + Lx4A LINE L1 5898 6213 -845 3 1311 435 303 32 26 chr1 95274663 95274853 -101920579 - L1M4 LINE L1 -445 5739 5549 3 1311 252 143 0 58 chr1 95275685 95275737 -101919695 - B2_Mm2 SINE B2 -100 95 47 3 1311 1247 70 33 44 chr1 95275802 95275982 -101919450 - B2_Mm1t SINE B2 -14 179 2 3 1311 478 194 16 24 chr1 95275986 95276102 -101919330 - L1M4 LINE L1 -753 5425 5307 3 1311 993 98 0 0 chr1 95276102 95276245 -101919187 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 3 1311 473 216 85 1032 chr1 95276245 95276385 -101919047 - L1M4 LINE L1 -870 5308 5162 3 1311 1357 51 85 0 chr1 95276416 95276592 -101918840 - B2_Mm2 SINE B2 -4 191 1 3 1311 428 0 19 0 chr1 95276853 95276905 -101918527 + (CCA)n Simple_repeat Simple_repeat 2 54 0 3 1311 1289 90 31 26 chr1 95278079 95278272 -101917160 - B2_Mm2 SINE B2 -1 194 1 3 1311 213 192 0 0 chr1 95278275 95278303 -101917129 + T-rich Low_complexity Low_complexity 25 52 0 3 1311 276 30 0 0 chr1 95278310 95278343 -101917089 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1311 1153 48 7 13 chr1 95278343 95278484 -101916948 - B1_Mus1 SINE Alu -7 141 2 3 1311 213 192 0 0 chr1 95278484 95278507 -101916925 + T-rich Low_complexity Low_complexity 2 24 0 3 1311 872 184 161 5 chr1 95278508 95278694 -101916738 - B3 SINE B2 0 216 2 3 1311 298 202 65 154 chr1 95278815 95278938 -101916494 - Tigger5 DNA MER2_type -5 2401 2290 3 1311 387 356 62 0 chr1 95278966 95279160 -101916272 - Tigger5 DNA MER2_type -2200 206 1 3 1311 1781 138 114 96 chr1 95279337 95279446 -101915986 - ORR1C2 LTR MaLR 0 384 291 3 1311 1222 28 14 14 chr1 95279446 95279592 -101915840 + B1_Mm SINE Alu 2 147 0 3 1311 1781 138 114 96 chr1 95279592 95279615 -101915817 - ORR1C2 LTR MaLR -94 290 276 3 1311 1412 81 16 0 chr1 95279615 95279801 -101915631 + B2_Mm1a SINE B2 1 189 -4 3 1311 1781 138 114 96 chr1 95279801 95279873 -101915559 - ORR1C2 LTR MaLR -109 275 171 3 1311 231 36 0 0 chr1 95279873 95279901 -101915531 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 3 1311 1781 138 114 96 chr1 95279901 95280071 -101915361 - ORR1C2 LTR MaLR -214 170 1 3 1311 342 0 0 0 chr1 95280107 95280145 -101915287 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1311 512 289 109 25 chr1 95282608 95282810 -101912622 + B4 SINE B4 1 219 -73 3 1311 862 166 22 0 chr1 95283228 95283367 -101912065 - B1_Mur2 SINE Alu -7 142 1 3 1311 1297 157 4 51 chr1 95284285 95284520 -101910912 + URR1B DNA MER1_type 2 225 0 3 1311 183 104 98 59 chr1 95284696 95284747 -101910685 - MIRb SINE MIR -189 79 27 3 1311 1253 41 0 0 chr1 95284778 95284924 -101910508 + B1_Mm SINE Alu 2 147 0 3 1311 569 203 17 6 chr1 95285857 95286035 -101909397 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 1311 570 148 20 29 chr1 95286054 95286405 -101909027 + (CATA)n Simple_repeat Simple_repeat 1 347 0 3 1311 1138 239 5 0 chr1 95288468 95288690 -101906742 + ID_B1 SINE B4 1 223 -1 3 1311 500 234 20 93 chr1 95289113 95289143 -101906289 - MTD LTR MaLR -84 335 307 3 163 3457 30 10 0 chr1 95289143 95289536 -101905896 - MTB LTR MaLR 0 400 4 3 1312 1380 74 11 0 chr1 95289536 95289712 -101905720 + B2_Mm1t SINE B2 2 179 -14 3 1312 180 0 0 0 chr1 95289712 95289732 -101905700 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1312 500 234 20 93 chr1 95289732 95289850 -101905582 - MTD LTR MaLR -113 306 198 3 1312 201 154 0 0 chr1 95289855 95289894 -101905538 + CT-rich Low_complexity Low_complexity 4 42 0 3 1312 618 180 131 0 chr1 95289971 95290093 -101905339 + B1_Mur4 SINE Alu 5 142 -8 3 1312 294 29 0 0 chr1 95290098 95290133 -101905299 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1312 644 312 23 0 chr1 95290331 95290507 -101904925 + ID_B1 SINE B4 2 181 -43 3 1312 1284 74 20 36 chr1 95290516 95290712 -101904720 - B2_Mm2 SINE B2 -1 194 2 3 1312 180 0 0 0 chr1 95290731 95290751 -101904681 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1312 345 125 0 0 chr1 95292973 95293029 -101902403 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1312 518 279 155 0 chr1 95293045 95293174 -101902258 - RSINE1 SINE B4 -16 149 1 3 1312 434 316 96 88 chr1 95293265 95293640 -101901792 - MTEb LTR MaLR 0 379 2 3 1312 292 311 68 8 chr1 95295170 95295303 -101900129 - MLT1K LTR MaLR -2 593 453 3 1312 1349 70 16 26 chr1 95296672 95296862 -101898570 - B2_Mm2 SINE B2 -6 189 2 3 1312 405 58 0 0 chr1 95298259 95298311 -101897121 + (TGG)n Simple_repeat Simple_repeat 2 53 0 3 1312 592 297 179 58 chr1 95301247 95301376 -101894056 + ORR1D2 LTR MaLR 2 135 -235 3 1312 1334 102 43 0 chr1 95301376 95301563 -101893869 - B2_Mm2 SINE B2 0 195 1 3 1312 592 297 179 58 chr1 95301563 95301762 -101893670 + ORR1D2 LTR MaLR 136 370 0 3 1312 525 265 88 66 chr1 95305909 95306091 -101889341 + B3A SINE B2 11 196 -2 3 1312 879 228 64 0 chr1 95306113 95306315 -101889117 + B3 SINE B2 1 215 -1 3 1312 620 142 131 23 chr1 95306320 95306450 -101888982 - B1_Mur3 SINE Alu -5 144 1 3 1312 1302 183 165 29 chr1 95306549 95306975 -101888457 + RMER4B LTR ERVK 2 446 -20 3 1312 506 235 29 129 chr1 95306999 95307170 -101888262 + RSINE1 SINE B4 2 155 -10 3 1312 714 250 44 25 chr1 95307786 95307946 -101887486 + RSINE1 SINE B4 3 165 0 3 1312 702 124 0 28 chr1 95308714 95308822 -101886610 + B1_Mur2 SINE Alu 37 141 -8 3 1312 215 200 13 51 chr1 95309620 95309699 -101885733 + A-rich Low_complexity Low_complexity 4 79 0 3 1312 459 115 240 40 chr1 95312058 95312158 -101883274 - PB1D9 SINE Alu 0 120 1 3 1312 1197 68 0 0 chr1 95314990 95315137 -101880295 - B1_Mm SINE Alu 0 147 1 4 1312 247 311 33 0 chr1 95315250 95315311 -101880121 + PB1D10 SINE Alu 5 67 -50 4 1312 345 278 90 131 chr1 95315767 95316011 -101879421 - B4A SINE B4 -13 279 46 4 1312 499 271 125 31 chr1 95316006 95316166 -101879266 - B3A SINE B2 -15 183 9 4 1312 486 229 28 47 chr1 95316321 95316452 -101878980 - PB1D9 SINE Alu -15 132 6 4 1312 528 262 78 95 chr1 95317221 95317516 -101877916 - B4A SINE B4 -2 290 1 4 1312 25 31 0 0 chr1 95319088 95319120 -101876312 + AT_rich Low_complexity Low_complexity 1 32 0 4 1312 251 254 0 35 chr1 95320011 95320068 -101875364 + RSINE1 SINE B4 9 63 -102 4 1312 873 120 32 0 chr1 95321185 95321310 -101874122 + B3 SINE B2 2 130 -86 4 1312 445 237 19 16 chr1 95322361 95322474 -101872958 - PB1D9 SINE Alu -34 114 5 4 1312 253 328 44 81 chr1 95322371 95322507 -101872925 - B4 SINE B4 -97 195 65 4 1312 219 69 0 0 chr1 95323425 95323454 -101871978 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1312 1137 79 0 0 chr1 95323454 95323593 -101871839 - B1_Mus1 SINE Alu -5 143 5 4 1312 758 175 50 14 chr1 95324317 95324456 -101870976 - B1_Mur4 SINE Alu -5 145 2 4 1312 253 316 20 39 chr1 95325159 95325261 -101870171 - B4A SINE B4 -5 287 188 4 1312 609 231 20 47 chr1 95326375 95326525 -101868907 + B4 SINE B4 146 291 -1 4 1312 217 268 18 0 chr1 95328423 95328479 -101866953 + ID4 SINE ID 11 67 -16 4 1312 392 265 136 0 chr1 95328642 95328774 -101866658 + B4A SINE B4 125 274 -18 4 1312 821 178 14 14 chr1 95329306 95329454 -101865978 + B1_Mur4 SINE Alu 3 150 0 4 1312 689 270 186 28 chr1 95329557 95329805 -101865627 + B4A SINE B4 4 290 -2 4 1312 210 71 0 0 chr1 95330053 95330081 -101865351 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 4 1312 1450 77 0 25 chr1 95330225 95330424 -101865008 + B2_Mm2 SINE B2 1 194 -1 4 1312 350 162 88 0 chr1 95331117 95331185 -101864247 + B1F SINE Alu 41 114 -35 4 1312 1255 183 138 113 chr1 95331304 95331525 -101863907 - RCHARR1 DNA MER1_type -84 890 649 4 1312 1214 61 0 0 chr1 95331525 95331672 -101863760 + B1_Mus1 SINE Alu 2 148 0 4 1312 1255 183 138 113 chr1 95331672 95331936 -101863496 - RCHARR1 DNA MER1_type -326 648 393 4 1312 435 19 0 0 chr1 95331951 95332003 -101863429 + (TATG)n Simple_repeat Simple_repeat 1 52 0 4 1312 218 130 0 61 chr1 95332054 95332103 -101863329 + A-rich Low_complexity Low_complexity 3 48 0 4 1312 318 210 252 24 chr1 95332129 95332256 -101863176 - RSINE1 SINE B4 -8 157 2 4 1312 644 186 62 8 chr1 95332542 95332672 -101862760 + B1_Mur2 SINE Alu 2 138 -11 4 1312 216 0 0 0 chr1 95332672 95332696 -101862736 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1312 1459 87 38 0 chr1 95335281 95335466 -101859966 - B2_Mm2 SINE B2 -3 192 1 4 1312 636 165 365 11 chr1 95335506 95335602 -101859830 - Lx4A LINE L1 -1 7057 6942 4 1312 222 37 0 0 chr1 95335602 95335629 -101859803 + (CCA)n Simple_repeat Simple_repeat 3 29 0 4 1312 636 165 365 11 chr1 95335629 95335710 -101859722 - Lx4A LINE L1 -117 6941 6817 4 1312 24 32 0 0 chr1 95336283 95336314 -101859118 + AT_rich Low_complexity Low_complexity 1 31 0 4 1312 227 194 152 10 chr1 95336318 95336417 -101859015 + Charlie5 DNA MER1_type 2234 2346 -278 4 1312 431 272 71 8 chr1 95336436 95336562 -101858870 - RSINE1 SINE B4 -3 162 29 4 1312 368 247 154 22 chr1 95336743 95336834 -101858598 + PB1D10 SINE Alu 7 109 -8 4 1312 250 173 19 0 chr1 95336901 95336953 -101858479 + Charlie5 DNA MER1_type 2572 2624 0 4 1312 723 217 43 7 chr1 95338295 95338434 -101856998 + B1_Mus2 SINE Alu 1 144 -3 4 1312 252 0 0 0 chr1 95338441 95338469 -101856963 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1312 707 137 25 17 chr1 95339265 95339384 -101856048 + PB1D9 SINE Alu 1 120 0 4 1312 554 220 16 63 chr1 95339541 95339667 -101855765 - PB1D9 SINE Alu 0 120 1 4 1312 22 0 0 0 chr1 95342228 95342250 -101853182 + GC_rich Low_complexity Low_complexity 1 22 0 4 1312 21 0 0 0 chr1 95342294 95342315 -101853117 + GC_rich Low_complexity Low_complexity 1 21 0 4 1312 260 196 0 73 chr1 95343004 95343059 -101852373 - PB1D7 SINE Alu -67 53 3 4 1312 464 224 45 27 chr1 95343757 95343867 -101851565 + PB1D10 SINE Alu 5 116 -1 4 1312 1289 54 0 0 chr1 95344184 95344331 -101851101 + B1_Mus2 SINE Alu 1 147 0 4 1312 294 333 11 11 chr1 95344718 95344812 -101850620 + B4A SINE B4 2 95 -197 4 1312 324 0 0 0 chr1 95344832 95344868 -101850564 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1312 1020 236 38 5 chr1 95344895 95345104 -101850328 + B3 SINE B2 1 216 0 4 1312 228 346 13 13 chr1 95345111 95345190 -101850242 + ID4 SINE ID 3 81 -2 4 1312 25 0 0 0 chr1 95345208 95345233 -101850199 + AT_rich Low_complexity Low_complexity 1 25 0 4 1312 300 294 12 6 chr1 95345383 95345467 -101849965 + ID4 SINE ID 11 91 -61 4 1312 230 318 12 12 chr1 95345481 95345567 -101849865 + RMER4A LTR ERVK 25 110 -356 4 1312 294 50 0 0 chr1 95346159 95346199 -101849233 + (C)n Simple_repeat Simple_repeat 1 40 0 4 1312 1082 67 0 43 chr1 95346199 95346339 -101849093 - B1_Mm SINE Alu -12 135 2 4 1312 604 245 37 49 chr1 95346358 95346521 -101848911 - RSINE1 SINE B4 0 165 5 4 1312 5446 36 19 8 chr1 95346544 95347180 -101848252 + L1Md_F3 LINE L1 5941 6583 -1 4 1312 907 148 21 0 chr1 95347204 95347346 -101848086 + B1_Mur4 SINE Alu 6 150 0 4 1312 320 336 129 14 chr1 95347377 95347516 -101847916 - RSINE1 SINE B4 0 165 11 4 1312 450 0 0 0 chr1 95348051 95348101 -101847331 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1312 319 322 51 6 chr1 95348429 95348604 -101846828 + Tigger13a DNA MER2_type 415 597 -174 4 1312 639 50 20 20 chr1 95348791 95348892 -101846540 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 4 1312 201 94 0 0 chr1 95348893 95348925 -101846507 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 4 1312 513 165 8 114 chr1 95349397 95349520 -101845912 - B1_Mur2 SINE Alu 0 149 40 4 1312 328 250 22 11 chr1 95349880 95349969 -101845463 + ID_B1 SINE B4 135 224 0 4 1312 190 276 53 0 chr1 95350100 95350176 -101845256 + MIR3 SINE MIR 77 156 -52 4 1312 651 250 0 134 chr1 95350531 95350640 -101844792 - B4 SINE B4 -120 172 73 4 1312 551 314 0 0 chr1 95350640 95350777 -101844655 - B1_Mur2 SINE Alu -12 137 1 4 1312 651 250 0 134 chr1 95350777 95350861 -101844571 - B4 SINE B4 -220 72 5 4 1312 571 273 200 32 chr1 95351973 95352223 -101843209 + B4A SINE B4 1 292 0 4 1312 897 230 56 20 chr1 95352258 95352453 -101842979 + B3 SINE B2 2 203 -13 4 1312 760 259 7 0 chr1 95352584 95352731 -101842701 + RSINE1 SINE B4 3 150 -15 4 1312 326 152 4 0 chr1 95352768 95352829 -101842603 + PB1 SINE Alu 52 121 -6 4 1312 615 255 66 66 chr1 95352845 95352996 -101842436 + B3A SINE B2 20 170 -46 4 1312 207 0 0 0 chr1 95353077 95353100 -101842332 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1312 929 217 106 0 chr1 95353131 95353320 -101842112 - B3 SINE B2 -5 211 3 4 1312 381 294 164 20 chr1 95353322 95353468 -101841964 + ID_B1 SINE B4 50 216 -8 4 1312 250 288 0 17 chr1 95353494 95353554 -101841878 + ID SINE ID 1 59 -165 4 1312 275 275 174 8 chr1 95353602 95353723 -101841709 + MLT1D LTR MaLR 268 408 -97 4 1312 623 280 54 11 chr1 95354027 95354211 -101841221 - B3A SINE B2 -6 192 1 4 1312 1150 71 43 0 chr1 95354331 95354472 -101840960 - B1_Mus1 SINE Alu 0 148 2 4 1312 186 43 0 0 chr1 95354857 95354880 -101840552 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1312 772 107 199 39 chr1 95355100 95355256 -101840176 + B2_Mm2 SINE B2 15 195 0 4 1312 348 88 0 0 chr1 95355550 95355607 -101839825 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 4 1312 495 0 0 0 chr1 95355610 95355665 -101839767 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1312 1078 73 7 0 chr1 95356252 95356389 -101839043 + B1_Mus1 SINE Alu 5 142 -6 4 1312 306 0 0 0 chr1 95356392 95356426 -101839006 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1312 210 328 0 0 chr1 95356875 95356939 -101838493 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 4 1312 291 140 0 0 chr1 95357006 95357056 -101838376 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 4 1312 234 0 0 0 chr1 95357574 95357600 -101837832 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1312 1055 227 33 24 chr1 95358315 95358527 -101836905 - B3 SINE B2 -1 215 2 4 1312 269 171 0 0 chr1 95358704 95358745 -101836687 + PB1 SINE Alu 20 60 -67 4 1312 375 156 189 0 chr1 95358768 95358858 -101836574 - B1F2 SINE Alu -1 148 42 4 1312 708 199 112 169 chr1 95358952 95359248 -101836184 + MT2A LTR ERVL 1 279 -254 4 1312 2127 134 12 3 chr1 95359250 95359579 -101835853 + ORR1A1 LTR MaLR 7 338 -8 4 1312 11109 112 120 26 chr1 95359583 95361114 -101834318 + ORR1A1-int LTR MaLR 1 1707 -256 4 1312 1529 59 16 21 chr1 95361114 95361304 -101834128 - B2_Mm2 SINE B2 -6 189 1 4 1312 11109 112 120 26 chr1 95361304 95361564 -101833868 + ORR1A1-int LTR MaLR 1708 1961 -2 4 1312 1938 119 34 3 chr1 95361564 95361858 -101833574 + ORR1A1 LTR MaLR 36 338 -8 4 1312 509 259 137 19 chr1 95361856 95362018 -101833414 + MT2A LTR ERVL 320 531 -70 4 1312 229 160 0 0 chr1 95362084 95362130 -101833302 + MT2A LTR ERVL 488 567 0 4 1312 251 346 26 0 chr1 95362130 95362208 -101833224 + ID4 SINE ID 4 83 0 4 1312 809 128 80 29 chr1 95364049 95364186 -101831246 + B1_Mus1 SINE Alu 5 148 0 4 1312 429 287 119 7 chr1 95364513 95364664 -101830768 - MER20 DNA MER1_type -4 215 48 4 1312 357 307 25 34 chr1 95364754 95364872 -101830560 - PB1D10 SINE Alu 0 117 1 4 1312 564 207 66 41 chr1 95364883 95365004 -101830428 - B1F2 SINE Alu -19 130 7 4 1312 865 222 42 28 chr1 95365043 95365256 -101830176 + B4A SINE B4 5 220 -72 5 1312 582 264 15 8 chr1 95365262 95365392 -101830040 + B1F2 SINE Alu 1 131 -18 5 1312 503 231 7 76 chr1 95365392 95365537 -101829895 + B1F1 SINE Alu 15 149 0 5 1312 889 150 57 0 chr1 95365756 95365896 -101829536 - B1_Mur2 SINE Alu -1 148 1 5 1312 464 178 0 14 chr1 95366146 95366220 -101829212 - B1_Mus1 SINE Alu -67 81 9 5 1312 346 255 40 69 chr1 95366220 95366245 -101829187 - B4 SINE B4 -123 167 72 5 1312 242 294 19 47 chr1 95366281 95366293 -101829139 - YREP_Mm Unknown Unknown -1487 325 317 5 1312 423 286 31 0 chr1 95366293 95366391 -101829041 + B1F SINE Alu 2 102 -47 5 1312 580 244 96 64 chr1 95366718 95366906 -101828526 - B3A SINE B2 -1 197 4 5 1312 207 359 83 68 chr1 95367575 95367841 -101827591 + L2a LINE L2 2999 3268 -107 5 1312 266 303 59 43 chr1 95368294 95368480 -101826952 + L1MA7 LINE L1 6096 6284 -7 5 1312 999 259 14 14 chr1 95369014 95369229 -101826203 + B3 SINE B2 2 216 0 5 1312 1257 61 0 0 chr1 95369309 95369457 -101825975 + B1_Mus1 SINE Alu 1 148 0 5 1312 459 33 0 0 chr1 95369796 95369856 -101825576 + B1_Mus2 SINE Alu 88 147 0 5 1312 180 0 0 0 chr1 95369856 95369876 -101825556 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 5 1312 1009 264 124 12 chr1 95370075 95370397 -101825035 + Lx8 LINE L1 6409 6766 -707 5 1312 602 171 29 0 chr1 95370412 95370517 -101824915 + B1_Mus1 SINE Alu 40 147 -1 5 1312 1507 218 92 17 chr1 95370538 95370884 -101824548 + Lx8 LINE L1 6776 7147 -326 5 1312 261 0 0 0 chr1 95370912 95370941 -101824491 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 5 1312 977 235 20 15 chr1 95371086 95371285 -101824147 + B3 SINE B2 7 206 -10 5 1312 597 198 182 0 chr1 95371780 95371906 -101823526 + B1_Mur3 SINE Alu 1 149 0 5 1312 399 213 0 51 chr1 95372120 95372199 -101823233 - ID_B1 SINE B4 -46 178 104 5 1312 409 248 19 56 chr1 95372683 95372790 -101822642 - PB1D10 SINE Alu -12 105 3 5 1312 358 256 48 110 chr1 95373185 95373330 -101822102 - ID_B1 SINE B4 -12 212 77 5 1312 1270 42 0 0 chr1 95376601 95376743 -101818689 + B1_Mm SINE Alu 1 142 -5 5 1312 186 71 0 0 chr1 95377995 95378023 -101817409 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 1312 1093 61 40 7 chr1 95378024 95378172 -101817260 - B2_Mm2 SINE B2 -41 154 2 5 1312 237 317 104 19 chr1 95378539 95378645 -101816787 + PB1D10 SINE Alu 1 115 -2 5 1312 353 238 216 24 chr1 95378675 95378800 -101816632 - B1F SINE Alu 0 149 1 5 1312 399 274 69 0 chr1 95378987 95379089 -101816343 - PB1D10 SINE Alu -8 109 1 5 1312 436 157 36 89 chr1 95379274 95379386 -101816046 - B2_Mm2 SINE B2 -5 190 85 5 1312 561 215 134 30 chr1 95379418 95379552 -101815880 - B1_Mur3 SINE Alu -1 148 1 5 1312 1135 91 0 0 chr1 95379661 95379804 -101815628 - B1_Mm SINE Alu 0 147 5 5 1312 23 0 0 0 chr1 95379840 95379863 -101815569 + AT_rich Low_complexity Low_complexity 1 23 0 5 1312 344 281 131 68 chr1 95379937 95380158 -101815274 + L1MC5 LINE L1 7680 7914 -47 5 1312 924 192 128 0 chr1 95380245 95380432 -101815000 - B3 SINE B2 -5 211 1 5 1312 351 0 0 0 chr1 95380896 95380935 -101814497 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1312 553 248 8 15 chr1 95381005 95381136 -101814296 - RSINE1 SINE B4 -33 132 3 5 1312 749 199 36 7 chr1 95381300 95381437 -101813995 + B1_Mur2 SINE Alu 2 142 -7 5 1312 25 83 0 0 chr1 95381489 95381549 -101813883 + AT_rich Low_complexity Low_complexity 1 60 0 5 1312 839 271 192 12 chr1 95381581 95381914 -101813518 - Lx6 LINE L1 -30 7430 7038 5 1312 431 220 16 107 chr1 95382151 95382172 -101813260 + MT2B LTR ERVL 147 156 -445 5 1312 637 197 29 2 chr1 95382172 95382303 -101813129 + B1_Mur2 SINE Alu 3 145 -4 5 1312 1710 47 0 0 chr1 95383124 95383317 -101812115 + B2_Mm1a SINE B2 1 193 0 5 1312 268 285 29 7 chr1 95383634 95383772 -101811660 - L1ME4a LINE L1 -151 5973 5833 5 1312 279 79 0 0 chr1 95383868 95383906 -101811526 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1312 818 60 248 0 chr1 95383906 95384023 -101811409 - B1_Mus2 SINE Alu 0 147 2 5 1312 298 253 27 0 chr1 95384223 95384298 -101811134 - PB1D10 SINE Alu -31 86 10 5 1312 271 333 23 0 chr1 95384298 95384310 -101811122 - ID_B1 SINE B4 -57 167 79 5 1312 790 235 80 0 chr1 95385047 95385209 -101810223 + B3 SINE B2 1 175 -41 5 1312 270 253 40 130 chr1 95386670 95386770 -101808662 - B4 SINE B4 -193 99 9 5 1312 232 176 142 4 chr1 95386863 95386932 -101808500 + B1_Mur1 SINE Alu 39 148 -1 5 1312 895 169 214 6 chr1 95387343 95387521 -101807911 - B3 SINE B2 -1 215 1 5 1312 6227 79 5 10 chr1 95388066 95388858 -101806574 - L1Md_F2 LINE L1 -2 6580 5793 5 1312 460 304 72 33 chr1 95388968 95389121 -101806311 - RSINE1 SINE B4 -4 161 3 5 1312 262 160 100 0 chr1 95389148 95389198 -101806234 + MLT1F1 LTR MaLR 109 163 -385 5 1312 333 255 69 30 chr1 95389229 95389330 -101806102 + MLT1F1 LTR MaLR 305 409 -160 5 1312 821 162 27 34 chr1 95389359 95389506 -101805926 + B1_Mur2 SINE Alu 2 147 -2 5 1312 521 215 31 117 chr1 95389779 95389796 -101805636 - B1_Mur1 SINE Alu 0 149 137 5 1312 270 0 0 0 chr1 95389796 95389826 -101805606 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1312 521 215 31 117 chr1 95389826 95389971 -101805461 - B1_Mur1 SINE Alu -13 136 1 5 1312 30 45 0 0 chr1 95390157 95390201 -101805231 + AT_rich Low_complexity Low_complexity 1 44 0 5 1312 1376 87 22 0 chr1 95390455 95390640 -101804792 + B2_Mm1a SINE B2 1 189 -4 5 1312 269 319 10 31 chr1 95390719 95390816 -101804616 + PB1D10 SINE Alu 7 101 -16 5 1312 619 271 26 0 chr1 95391170 95391325 -101804107 + B3A SINE B2 3 161 -37 5 1312 267 262 0 0 chr1 95391408 95391469 -101803963 + B2_Mm2 SINE B2 1 61 -134 5 1312 254 75 0 24 chr1 95391461 95391502 -101803930 + PB1D10 SINE Alu 78 117 0 5 1312 234 297 16 0 chr1 95392550 95392614 -101802818 + ID4 SINE ID 6 70 -13 5 1312 217 333 27 0 chr1 95392614 95392625 -101802807 + ID SINE ID 6 82 -142 5 1312 292 226 0 0 chr1 95392755 95392808 -101802624 - ID4 SINE ID -20 63 11 5 1312 413 268 17 26 chr1 95392919 95393034 -101802398 - RSINE1 SINE B4 -50 115 2 5 1312 189 0 0 0 chr1 95393038 95393059 -101802373 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1312 1078 102 7 0 chr1 95393085 95393232 -101802200 - B1_Mus1 SINE Alu 0 148 1 5 1312 745 249 84 6 chr1 95393260 95393438 -101801994 - B3 SINE B2 -24 192 1 5 1312 204 94 57 0 chr1 95393565 95393618 -101801814 + T-rich Low_complexity Low_complexity 3 58 0 5 1312 995 97 28 0 chr1 95393618 95393672 -101801760 - B1_Mus1 SINE Alu 0 148 94 5 1312 522 0 0 0 chr1 95393672 95393730 -101801702 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1312 995 97 28 0 chr1 95393730 95393819 -101801613 - B1_Mus1 SINE Alu -55 93 2 5 1312 304 282 43 0 chr1 95394184 95394281 -101801151 - PB1D10 SINE Alu -6 111 5 5 1312 4150 52 46 0 chr1 95395059 95395579 -101799853 - L1_Mus1 LINE L1 0 6567 6024 5 1312 378 178 208 0 chr1 95396391 95396492 -101798940 - B1_Mus1 SINE Alu 0 148 27 5 1312 453 261 26 29 chr1 95396838 95396978 -101798454 - B1_Mur1 SINE Alu -5 144 11 5 1312 727 145 56 33 chr1 95397322 95397501 -101797931 + B3 SINE B2 3 195 0 5 1312 465 237 7 106 chr1 95397612 95397763 -101797669 + B1_Mur1 SINE Alu 2 137 -12 5 1312 231 114 0 0 chr1 95397819 95397854 -101797578 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 5 1312 1159 62 7 7 chr1 95397864 95398011 -101797421 - B1_Mm SINE Alu 0 147 1 5 1312 307 305 102 15 chr1 95398550 95398716 -101796716 + B3A SINE B2 2 194 -22 5 1312 707 189 112 40 chr1 95400299 95400499 -101794933 + B3 SINE B2 1 189 -6 5 1312 2515 59 19 6 chr1 95400712 95401035 -101794397 - ORR1A2 LTR MaLR 0 327 1 5 1312 265 271 94 39 chr1 95401085 95401213 -101794219 + B3A SINE B2 81 214 -2 5 1312 2006 180 100 31 chr1 95401557 95402005 -101793427 - RLTR28B LTR ERVL 0 481 3 5 1312 738 236 108 0 chr1 95403028 95403223 -101792209 + ID_B1 SINE B4 9 224 0 5 1312 27 49 0 0 chr1 95403864 95403905 -101791527 + AT_rich Low_complexity Low_complexity 1 41 0 5 1312 231 36 0 0 chr1 95404435 95404463 -101790969 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1312 630 229 20 40 chr1 95406692 95406842 -101788590 - B1_Mur1 SINE Alu 0 149 3 5 1312 1078 195 29 14 chr1 95406861 95407069 -101788363 - B3 SINE B2 -4 212 2 5 1312 273 291 34 23 chr1 95407100 95407188 -101788244 + RSINE1 SINE B4 6 94 -71 5 1312 1192 35 14 0 chr1 95407437 95407581 -101787851 - B1_Mm SINE Alu 0 147 2 5 1312 200 255 6 69 chr1 95408634 95408794 -101786638 + G-rich Low_complexity Low_complexity 6 155 0 5 1312 279 202 58 87 chr1 95409929 95410032 -101785400 - PB1D10 SINE Alu -5 112 13 5 1312 283 268 70 16 chr1 95410245 95410374 -101785058 + MIR SINE MIR 117 252 -10 5 1312 1258 42 18 0 chr1 95411149 95411315 -101784117 - B2_Mm2 SINE B2 -14 181 13 5 1312 515 266 28 28 chr1 95411496 95411639 -101783793 + RSINE1 SINE B4 21 163 -2 5 1312 279 239 89 22 chr1 95411917 95412007 -101783425 - PB1D9 SINE Alu -10 137 34 5 1312 328 220 53 44 chr1 95412682 95412796 -101782636 + B3A SINE B2 82 196 -2 6 1312 480 263 163 0 chr1 95412873 95413063 -101782369 + ID_B1 SINE B4 4 224 0 6 1312 441 121 26 53 chr1 95413422 95413535 -101781897 - RMER17C LTR ERVK -135 275 166 6 1312 515 299 131 12 chr1 95413739 95413983 -101781449 - Arthur1B DNA Tip100 -933 292 20 6 1312 189 0 0 0 chr1 95414269 95414290 -101781142 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6 1312 680 204 20 34 chr1 95414292 95414439 -101780993 - B1_Mur3 SINE Alu -4 145 1 6 1312 290 186 0 44 chr1 95414636 95414726 -101780706 + Lx4B LINE L1 6969 7054 -4 6 1312 322 288 119 52 chr1 95414856 95415142 -101780290 + L1MD2 LINE L1 30 334 -6213 6 1312 343 294 109 33 chr1 95415186 95415397 -101780035 + L1MD2 LINE L1 553 779 -5768 6 1312 729 238 18 18 chr1 95415424 95415587 -101779845 + B3 SINE B2 1 163 -53 6 1312 399 263 20 0 chr1 95415647 95415746 -101779686 + L1MD2 LINE L1 950 1050 -5497 6 1312 189 0 0 0 chr1 95415921 95415942 -101779490 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1312 1215 56 0 12 chr1 95415943 95416107 -101779325 - B2_Mm2 SINE B2 -33 162 1 6 1312 2059 133 113 16 chr1 95416134 95416516 -101778916 + MTC LTR MaLR 1 419 -2 6 1312 243 309 62 95 chr1 95416541 95416720 -101778712 + MLT1E2 LTR MaLR 40 212 -415 6 1312 825 270 96 31 chr1 95417401 95417477 -101777955 - B4A SINE B4 -14 278 201 6 1312 1221 156 168 71 chr1 95417477 95417816 -101777616 + ORR1D1 LTR MaLR 1 372 -2 6 1312 825 270 96 31 chr1 95417816 95417999 -101777433 - B4A SINE B4 -92 200 2 6 1312 389 200 211 0 chr1 95418532 95418627 -101776805 + RSINE1 SINE B4 6 120 -45 6 1312 387 0 0 0 chr1 95418627 95418670 -101776762 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1312 24 0 0 0 chr1 95419207 95419231 -101776201 + AT_rich Low_complexity Low_complexity 1 24 0 6 1312 189 0 0 0 chr1 95419602 95419623 -101775809 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1312 467 187 36 36 chr1 95419954 95420065 -101775367 - ORR1D1 LTR MaLR -263 111 1 6 20 21 71 0 0 chr1 95420386 95420428 -101775004 + AT_rich Low_complexity Low_complexity 1 42 0 6 1313 881 217 15 107 chr1 95420470 95420578 -101774854 - B3A SINE B2 -11 187 89 6 1313 1620 42 5 0 chr1 95420578 95420769 -101774663 - B2_Mm1t SINE B2 0 193 2 6 1313 881 217 15 107 chr1 95420769 95420866 -101774566 - B3A SINE B2 -110 88 1 6 1313 731 247 44 6 chr1 95420888 95421071 -101774361 + B3 SINE B2 21 210 -6 6 1313 567 268 11 120 chr1 95421107 95421298 -101774134 + B3 SINE B2 34 203 -13 6 1313 657 285 18 0 chr1 95421296 95421461 -101773971 + B3 SINE B2 39 206 -10 6 1313 360 256 71 136 chr1 95421518 95421658 -101773774 - B1F1 SINE Alu -12 137 7 6 1313 235 299 71 20 chr1 95421905 95422004 -101773428 + PB1D10 SINE Alu 1 104 -13 6 1313 561 235 26 7 chr1 95422785 95422939 -101772493 - RSINE1 SINE B4 0 165 9 6 1313 322 177 142 12 chr1 95423442 95423542 -101771890 - PB1D9 SINE Alu -2 147 33 6 1313 642 226 177 0 chr1 95423601 95423782 -101771650 - ID_B1 SINE B4 -10 214 2 6 1313 459 120 16 189 chr1 95423832 95424017 -101771415 - RMER17A2 LTR ERVK -396 510 358 6 1313 1155 58 0 0 chr1 95424846 95424985 -101770447 - B1_Mus1 SINE Alu -8 140 2 6 1313 22 56 0 0 chr1 95425092 95425128 -101770304 + AT_rich Low_complexity Low_complexity 1 36 0 6 1313 602 197 94 7 chr1 95425577 95425715 -101769717 - B1_Mur4 SINE Alu 0 150 1 6 1313 311 219 55 0 chr1 95426258 95426331 -101769101 - ID_B1 SINE B4 -2 222 146 6 1313 330 249 244 39 chr1 95426347 95426577 -101768855 - L1M5 LINE L1 -451 5727 5451 6 1313 231 36 0 0 chr1 95426864 95426892 -101768540 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 6 1313 379 209 0 55 chr1 95426904 95426995 -101768437 - B1F SINE Alu -8 141 56 6 1313 308 326 20 0 chr1 95427009 95427107 -101768325 + ID_B1 SINE B4 77 176 -48 6 1313 433 209 72 0 chr1 95427021 95427120 -101768312 + PB1D7 SINE Alu 8 125 -2 6 1313 471 217 0 0 chr1 95427623 95427729 -101767703 + T-rich Low_complexity Low_complexity 1 106 0 6 1313 1184 61 0 0 chr1 95427730 95427877 -101767555 - B1_Mm SINE Alu 0 147 1 6 1313 240 328 152 28 chr1 95427913 95428090 -101767342 - L1M5 LINE L1 -1918 4228 4039 6 1313 1156 95 0 0 chr1 95428090 95428238 -101767194 + B1_Mus1 SINE Alu 1 148 0 6 1313 240 328 152 28 chr1 95428238 95428373 -101767059 - L1M5 LINE L1 -2108 4038 3897 6 1313 651 202 62 8 chr1 95428373 95428503 -101766929 - B1_Mur1 SINE Alu -10 139 3 6 1313 240 305 88 29 chr1 95428503 95428714 -101766718 - L1M5 LINE L1 -2250 3896 3641 6 1313 481 154 87 11 chr1 95429111 95429203 -101766229 - PB1D9 SINE Alu -21 99 1 6 1313 1847 169 62 34 chr1 95429262 95429648 -101765784 + MTD LTR MaLR 5 401 -18 6 1313 259 313 0 0 chr1 95429693 95429760 -101765672 + L2c LINE L2 3093 3159 -228 6 1313 2192 113 6 9 chr1 95429764 95430094 -101765338 - ORR1A4 LTR MaLR 0 329 1 6 1313 26 50 0 0 chr1 95430151 95430191 -101765241 + AT_rich Low_complexity Low_complexity 1 40 0 6 1313 42 0 0 0 chr1 95430355 95430397 -101765035 + AT_rich Low_complexity Low_complexity 1 42 0 6 1313 763 168 20 47 chr1 95430397 95430547 -101764885 - B1_Mus2 SINE Alu 0 147 2 6 1313 1395 132 67 16 chr1 95430571 95430825 -101764607 - RMER19B LTR ERVK 0 902 636 6 1313 3539 165 95 30 chr1 95431112 95431804 -101763628 - RMER19A LTR ERVK 0 737 1 6 1313 304 225 42 14 chr1 95432223 95432295 -101763137 + ID4 SINE ID 1 74 -9 6 1313 440 241 167 0 chr1 95432340 95432448 -101762984 + B1F1 SINE Alu 24 149 0 6 1313 832 117 0 0 chr1 95432465 95432585 -101762847 + B1_Mm SINE Alu 27 146 -1 6 1313 396 214 61 0 chr1 95432628 95432726 -101762706 + PB1D9 SINE Alu 1 104 -16 6 1313 629 238 76 23 chr1 95432739 95432911 -101762521 + B3 SINE B2 11 191 -25 6 1313 242 95 0 23 chr1 95432947 95432990 -101762442 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 6 1313 518 284 49 66 chr1 95433313 95433539 -101761893 + ID_B1 SINE B4 3 224 0 6 1313 2204 247 111 6 chr1 95434263 95434666 -101760766 + RCHARR1 DNA MER1_type 3 430 -544 6 1313 4309 40 10 2 chr1 95434666 95435174 -101760258 + RLTR1B LTR ERV1 1 512 0 6 1313 2204 247 111 6 chr1 95435174 95435439 -101759993 + RCHARR1 DNA MER1_type 431 741 -233 6 1313 234 0 47 47 chr1 95435442 95435485 -101759947 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1313 1259 34 0 0 chr1 95435487 95435634 -101759798 - B1_Mm SINE Alu 0 147 1 6 1313 1168 68 0 0 chr1 95435668 95435815 -101759617 + B1_Mm SINE Alu 1 147 0 6 1313 256 331 47 87 chr1 95435822 95435839 -101759593 + B4 SINE B4 79 218 -71 6 1313 753 178 0 0 chr1 95435839 95435968 -101759464 + B1_Mur4 SINE Alu 14 142 -8 6 1313 515 182 107 88 chr1 95435975 95436067 -101759365 + RCHARR1 DNA MER1_type 737 831 -143 6 1313 716 228 7 0 chr1 95436067 95436212 -101759220 - B1_Mus1 SINE Alu -1 147 2 6 1313 515 182 107 88 chr1 95436212 95436237 -101759195 + RCHARR1 DNA MER1_type 832 843 -131 6 1313 1461 103 0 0 chr1 95436237 95436432 -101759000 - B2_Mm2 SINE B2 0 195 1 6 1313 515 182 107 88 chr1 95436432 95436518 -101758914 + RCHARR1 DNA MER1_type 844 945 -29 6 1313 1327 186 170 43 chr1 95436856 95437227 -101758205 + MTC LTR MaLR 1 418 -3 6 1313 1282 159 5 5 chr1 95437284 95437492 -101757940 + MERVL_2A-int LTR ERVL 4196 4403 -1358 6 1313 407 291 29 0 chr1 95437906 95438009 -101757423 + PB1D7 SINE Alu 2 107 -13 6 1313 1116 88 0 0 chr1 95438173 95438320 -101757112 - B1_Mm SINE Alu 0 147 1 6 1313 457 227 0 0 chr1 95438580 95438677 -101756755 + B1_Mur2 SINE Alu 52 148 -1 6 1313 276 122 20 0 chr1 95438876 95438925 -101756507 + B1_Mus2 SINE Alu 91 140 -7 6 1313 230 0 33 0 chr1 95439002 95439032 -101756400 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1313 288 250 13 13 chr1 95439127 95439204 -101756228 - B3 SINE B2 -107 109 33 6 1313 1369 77 39 0 chr1 95439240 95439422 -101756010 - B2_Mm2 SINE B2 -5 190 2 6 1313 22 35 0 0 chr1 95439431 95439460 -101755972 + AT_rich Low_complexity Low_complexity 1 29 0 6 1313 1204 41 7 0 chr1 95439636 95439781 -101755651 + B1_Mus2 SINE Alu 2 147 0 6 1313 183 100 0 0 chr1 95439781 95439811 -101755621 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1313 724 111 19 24 chr1 95439842 95439991 -101755441 + B2_Mm2 SINE B2 3 141 -52 6 1313 1040 179 242 10 chr1 95439973 95440266 -101755166 + MT2A LTR ERVL 92 452 -81 6 1313 552 15 0 0 chr1 95440278 95440343 -101755089 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1313 758 278 77 26 chr1 95440473 95440746 -101754686 - Lx8 LINE L1 -277 7196 6910 6 1313 305 24 24 0 chr1 95440758 95440800 -101754632 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1313 954 99 0 0 chr1 95440800 95440941 -101754491 - B1_Mus1 SINE Alu -2 146 6 6 1313 2326 278 55 15 chr1 95440953 95441640 -101753792 - Lx8 LINE L1 -570 6903 6189 6 1313 690 315 57 18 chr1 95441676 95441957 -101753475 + MLT1A0 LTR MaLR 1 292 -73 6 1313 558 155 0 0 chr1 95441976 95442073 -101753359 + (CATA)n Simple_repeat Simple_repeat 1 97 0 6 1313 189 0 0 0 chr1 95442152 95442173 -101753259 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1313 649 167 84 38 chr1 95442200 95442331 -101753101 - B1_Mur4 SINE Alu -13 137 1 6 1313 312 281 70 134 chr1 95444130 95444414 -101751018 - LTR41B LTR ERVL -12 746 481 6 1313 291 272 30 42 chr1 95444660 95444957 -101750475 - RLTR15 LTR ERVK -43 316 58 6 1313 390 257 14 9 chr1 95445150 95445265 -101750167 - PB1D10 SINE Alu -1 119 1 6 1313 357 305 12 96 chr1 95446190 95446357 -101749075 + B4A SINE B4 1 153 -139 6 1313 723 281 4 67 chr1 95446624 95446849 -101748583 + B3 SINE B2 3 213 -3 6 1313 400 208 0 0 chr1 95446913 95446985 -101748447 - ID4 SINE ID -11 72 1 6 1313 1932 180 101 26 chr1 95447313 95447701 -101747731 - MTD LTR MaLR 0 419 3 6 1313 1995 189 79 59 chr1 95448458 95448952 -101746480 - RMER19B LTR ERVK -393 509 6 6 1313 1928 158 107 10 chr1 95448952 95449354 -101746078 - BGLII_B LTR ERVK 0 441 1 7 1313 215 157 28 28 chr1 95449554 95449626 -101745806 + CT-rich Low_complexity Low_complexity 1 72 0 7 1313 648 278 120 12 chr1 95449687 95450011 -101745421 - L1M3 LINE L1 -761 5379 5021 7 1313 227 319 29 0 chr1 95450038 95450107 -101745325 - B1F2 SINE Alu -38 111 41 7 1313 1140 276 58 5 chr1 95450158 95450606 -101744826 - L1M3 LINE L1 -1099 5041 4570 7 1313 497 298 151 19 chr1 95450605 95450975 -101744457 + L1M3 LINE L1 2210 2628 -3512 7 1313 330 316 8 42 chr1 95451067 95451186 -101744246 + B1F2 SINE Alu 24 138 -11 7 1313 877 251 19 0 chr1 95451326 95451537 -101743895 + B3 SINE B2 1 215 -1 7 1313 445 100 4 21 chr1 95451572 95451647 -101743785 - B1_Mus2 SINE Alu -7 113 47 7 1313 240 204 0 53 chr1 95451604 95451661 -101743771 - 4.5SRNA scRNA scRNA -8 86 33 7 1313 667 204 293 0 chr1 95451705 95451872 -101743560 + B3 SINE B2 1 216 0 7 1313 376 345 0 25 chr1 95451904 95452026 -101743406 + PB1D7 SINE Alu 2 120 0 7 1313 431 200 0 45 chr1 95452032 95452121 -101743311 + B1_Mur2 SINE Alu 39 123 -26 7 1313 392 262 71 8 chr1 95452257 95452384 -101743048 - RSINE1 SINE B4 -30 135 1 7 1313 3356 35 5 2 chr1 95453685 95454080 -101741352 - MTA_Mm LTR MaLR 0 396 1 7 1313 501 223 107 8 chr1 95454319 95454441 -101740991 - RSINE1 SINE B4 -14 151 18 7 1313 515 176 109 94 chr1 95454557 95454695 -101740737 - B1_Mus1 SINE Alu 0 148 9 7 1313 347 159 47 16 chr1 95454696 95454760 -101740672 + B1_Mur1 SINE Alu 57 122 -27 7 1313 572 211 89 0 chr1 95454779 95454902 -101740530 + B1_Mur1 SINE Alu 1 134 -15 7 1313 270 0 0 0 chr1 95455364 95455394 -101740038 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1313 412 254 26 17 chr1 95455398 95455531 -101739901 - B1F SINE Alu -11 136 1 7 1313 21 0 0 0 chr1 95455697 95455718 -101739714 + AT_rich Low_complexity Low_complexity 1 21 0 7 1313 523 212 74 22 chr1 95455727 95455862 -101739570 - B1_Mur1 SINE Alu 0 149 8 7 1313 323 265 9 117 chr1 95455938 95456049 -101739383 + RSINE1 SINE B4 50 148 -17 7 1313 726 110 0 17 chr1 95456313 95456433 -101738999 + B1_Mus2 SINE Alu 4 121 -26 7 1313 230 0 33 0 chr1 95458153 95458183 -101737249 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 7 1313 1214 35 7 0 chr1 95458183 95458328 -101737104 - B1_Mus2 SINE Alu 0 147 2 7 1313 580 216 94 0 chr1 95458347 95458511 -101736921 - B3 SINE B2 0 198 11 7 1313 276 263 166 27 chr1 95458541 95458685 -101736747 + B3 SINE B2 41 204 -12 7 1313 378 243 9 19 chr1 95458746 95458851 -101736581 - PB1D10 SINE Alu -12 105 2 7 1313 400 252 83 9 chr1 95459053 95459161 -101736271 - PB1D10 SINE Alu 0 117 2 7 1313 473 252 0 9 chr1 95459208 95459320 -101736112 - B1F SINE Alu -38 111 1 7 1313 284 186 0 54 chr1 95459254 95459328 -101736104 - B4A SINE B4 -142 150 81 7 1313 675 282 35 5 chr1 95459335 95459538 -101735894 - ID_B1 SINE B4 -7 217 9 7 1313 480 242 0 0 chr1 95459558 95459657 -101735775 - B1_Mur1 SINE Alu -2 147 49 7 1313 363 245 69 0 chr1 95460118 95460220 -101735212 + RLTR40 LTR ERVK 1 109 -708 7 1313 1299 181 127 6 chr1 95460225 95460556 -101734876 - MTD LTR MaLR -6 413 41 7 1313 210 37 0 0 chr1 95460558 95460585 -101734847 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1313 1323 233 121 23 chr1 95460601 95460988 -101734444 + RLTR40 LTR ERVK 118 542 -275 7 1313 409 261 92 0 chr1 95461033 95461175 -101734257 + RLTR40 LTR ERVK 650 804 -13 7 1313 240 170 0 0 chr1 95461183 95461236 -101734196 + CT-rich Low_complexity Low_complexity 1 53 0 7 1313 226 162 0 0 chr1 95461248 95461285 -101734147 - B1_Mur4 SINE Alu -113 37 1 7 1313 640 180 84 23 chr1 95461636 95461767 -101733665 + B1_Mus2 SINE Alu 9 147 0 7 1313 474 265 159 0 chr1 95462194 95462364 -101733068 - ID_B1 SINE B4 -3 221 25 7 1313 34 55 0 0 chr1 95462915 95462970 -101732462 + AT_rich Low_complexity Low_complexity 1 55 0 7 1313 638 213 108 12 chr1 95462981 95463147 -101732285 - B3 SINE B2 -34 182 1 7 1313 744 165 42 35 chr1 95463295 95463439 -101731993 - B1_Mur2 SINE Alu -2 147 3 7 1313 345 200 28 14 chr1 95464342 95464413 -101731019 - ID4_ SINE ID -10 73 2 7 1313 1220 87 75 0 chr1 95464878 95465051 -101730381 + B2_Mm1t SINE B2 2 187 -6 7 1313 23 33 0 0 chr1 95465062 95465092 -101730340 + AT_rich Low_complexity Low_complexity 1 30 0 7 1313 667 222 66 70 chr1 95465238 95465451 -101729981 + B3 SINE B2 2 213 -3 7 1313 2746 135 25 25 chr1 95467430 95467758 -101727674 + RMER4B LTR ERVK 90 421 -164 7 1313 3738 39 45 91 chr1 95467758 95468295 -101727137 - RLTR1B LTR ERV1 0 512 1 7 1313 2746 135 25 25 chr1 95468295 95468453 -101726979 + RMER4B LTR ERVK 422 576 -9 7 1313 246 271 14 0 chr1 95468569 95468639 -101726793 + PB1D10 SINE Alu 25 95 -22 7 1313 789 250 6 0 chr1 95468663 95468823 -101726609 + RSINE1 SINE B4 5 165 0 7 1313 224 214 0 0 chr1 95468823 95468865 -101726567 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1313 37 69 0 0 chr1 95468865 95468937 -101726495 + AT_rich Low_complexity Low_complexity 1 72 0 7 1313 568 248 93 0 chr1 95470131 95470260 -101725172 + RSINE1 SINE B4 4 144 -21 7 1313 344 282 90 15 chr1 95470321 95470454 -101724978 + B1F2 SINE Alu 1 143 -6 7 1313 28 0 0 0 chr1 95470457 95470485 -101724947 + AT_rich Low_complexity Low_complexity 1 28 0 7 1313 621 232 28 124 chr1 95470493 95470710 -101724722 + B3A SINE B2 3 198 0 7 1313 238 162 0 0 chr1 95470721 95470758 -101724674 + B3A SINE B2 27 63 -135 7 1313 227 246 115 0 chr1 95471137 95471198 -101724234 + ID_B1 SINE B4 76 143 -81 7 1313 695 195 109 29 chr1 95471397 95471571 -101723861 + B3A SINE B2 1 188 -10 7 1313 237 291 12 12 chr1 95471639 95471719 -101723713 + PB1D10 SINE Alu 38 117 0 7 1313 629 159 124 0 chr1 95471800 95471913 -101723519 + B3 SINE B2 2 128 -88 7 1313 27 0 0 0 chr1 95471958 95471985 -101723447 + AT_rich Low_complexity Low_complexity 1 27 0 7 1313 245 292 20 16 chr1 95472345 95472460 -101722972 - B1F1 SINE Alu -1 116 1 7 1313 234 304 25 12 chr1 95472672 95472752 -101722680 + L1M5 LINE L1 5566 5646 -478 7 1313 228 232 28 28 chr1 95473515 95473586 -101721846 - B3 SINE B2 -1 215 145 7 1313 512 226 16 16 chr1 95473712 95473838 -101721594 - MTE2a LTR MaLR -2 377 252 7 1313 257 201 14 0 chr1 95473914 95473973 -101721459 - MTE2a LTR MaLR -313 66 4 7 1313 512 188 26 18 chr1 95475174 95475288 -101720144 + PB1D10 SINE Alu 2 116 -1 7 1313 422 18 18 0 chr1 95475422 95475477 -101719955 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1313 221 171 0 0 chr1 95476060 95476095 -101719337 + B4A SINE B4 85 119 -173 7 1313 270 224 52 0 chr1 95478867 95478925 -101716507 - ID4 SINE ID -22 61 1 7 1313 493 244 35 0 chr1 95479095 95479210 -101716222 - B1F SINE Alu 0 149 31 7 1313 327 257 124 35 chr1 95479578 95479691 -101715741 - ID_B1 SINE B4 -51 173 51 7 1313 328 282 0 0 chr1 95480215 95480293 -101715139 - PB1D10 SINE Alu -33 84 7 7 1313 223 312 0 0 chr1 95480238 95480302 -101715130 - B4A SINE B4 -146 146 83 7 1313 451 235 29 0 chr1 95480491 95480593 -101714839 + PB1D10 SINE Alu 5 109 -8 7 1313 1313 66 66 0 chr1 95482226 95482407 -101713025 - B2_Mm1t SINE B2 0 193 1 7 1313 1776 137 86 34 chr1 95482578 95482903 -101712529 - MurERV4-int LTR ERVK -83 5177 4836 7 1313 3440 149 41 10 chr1 95482919 95483534 -101711898 - MurERV4-int LTR ERVK -1543 3717 3084 7 1313 781 150 7 29 chr1 95483778 95483915 -101711517 - MurERV4-int LTR ERVK -174 5086 4953 7 1313 329 159 110 0 chr1 95484146 95484219 -101711213 - MurERV4-int LTR ERVK -2167 3093 2957 7 1313 800 242 53 174 chr1 95484219 95484419 -101711013 - RLTR21 LTR ERVK 0 1404 1259 7 1313 356 59 0 19 chr1 95484419 95484471 -101710961 + (CATA)n Simple_repeat Simple_repeat 3 53 0 7 1313 4580 189 43 63 chr1 95484471 95485650 -101709782 - RLTR21 LTR ERVK -146 1258 5 7 1313 5622 222 77 25 chr1 95485659 95487622 -101707810 - MurERV4-int LTR ERVK -2228 3032 886 7 1313 1176 304 77 34 chr1 95487655 95488187 -101707245 - MurERV4-int LTR ERVK -4705 555 1 7 1313 334 19 19 0 chr1 95490130 95490184 -101705248 - RMER6A LTR ERVK -326 430 376 7 1313 201 74 0 0 chr1 95490184 95490211 -101705221 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 7 1313 2021 99 75 19 chr1 95490211 95490566 -101704866 - RMER6A LTR ERVK -259 461 51 7 1313 201 39 0 0 chr1 95490566 95490592 -101704840 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 7 1313 2021 92 63 19 chr1 95490592 95490642 -101704790 - RMER6A LTR ERVK -706 50 1 7 1313 185 0 0 39 chr1 95490644 95490670 -101704762 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1313 984 117 40 34 chr1 95490671 95490848 -101704584 - B2_Mm2 SINE B2 -16 179 2 7 1313 232 65 0 61 chr1 95490854 95490903 -101704529 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 7 1313 232 137 39 0 chr1 95491093 95491144 -101704288 + CT-rich Low_complexity Low_complexity 3 55 0 7 1313 410 204 37 26 chr1 95492990 95493105 -101702327 + PB1D7 SINE Alu 17 125 -24 7 1313 504 32 0 0 chr1 95493206 95493268 -101702164 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1313 336 24 0 0 chr1 95493268 95493308 -101702124 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1313 447 35 0 0 chr1 95493474 95493531 -101701901 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1313 681 249 119 26 chr1 95494022 95494216 -101701216 - B3 SINE B2 -4 212 1 7 1313 189 0 0 0 chr1 95494240 95494261 -101701171 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1313 216 0 0 0 chr1 95494369 95494393 -101701039 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1313 220 324 179 9 chr1 95495431 95495543 -101699889 + ID_B1 SINE B4 86 216 -8 7 1313 215 158 26 0 chr1 95495623 95495661 -101699771 + CT-rich Low_complexity Low_complexity 2 40 0 7 1313 396 211 0 0 chr1 95495664 95495735 -101699697 - PB1D10 SINE Alu -9 108 38 7 1313 259 226 0 0 chr1 95495691 95495744 -101699688 - 4.5SRNA scRNA scRNA -15 79 27 8 1313 1165 55 0 7 chr1 95496001 95496148 -101699284 - B1_Mus2 SINE Alu -1 146 1 8 1313 879 121 50 0 chr1 95497511 95497652 -101697780 - B1_Mur4 SINE Alu 0 150 3 8 1313 1477 168 80 26 chr1 95497980 95498292 -101697140 + ORR1A4 LTR MaLR 1 329 0 8 1313 750 249 114 0 chr1 95499201 95499394 -101696038 - B3 SINE B2 0 216 2 8 1313 473 299 77 12 chr1 95499604 95499773 -101695659 + B3A SINE B2 3 182 -16 8 1313 839 171 14 0 chr1 95500216 95500362 -101695070 + B1_Mur4 SINE Alu 2 149 -1 1 1313 1155 41 14 14 chr1 95500507 95500654 -101694778 - B1_Mus2 SINE Alu 0 147 1 2 1313 1294 20 0 0 chr1 95501212 95501358 -101694074 + B1_Mus2 SINE Alu 2 147 0 3 1313 22 0 0 0 chr1 95501386 95501408 -101694024 + AT_rich Low_complexity Low_complexity 1 22 0 4 1313 207 94 0 0 chr1 95501438 95501451 -101693981 + (CAAAA)n Simple_repeat Simple_repeat 2 14 0 5 1313 1212 48 0 14 chr1 95501451 95501599 -101693833 + B1_Mus2 SINE Alu 1 146 -1 6 1313 207 94 0 0 chr1 95501599 95501617 -101693815 + (CAAAA)n Simple_repeat Simple_repeat 5 22 0 7 1313 430 234 43 43 chr1 95501716 95501832 -101693600 + PB1D10 SINE Alu 2 117 0 8 1313 521 184 167 0 chr1 95502812 95502926 -101692506 + B3A SINE B2 5 137 -61 9 1313 916 127 15 0 chr1 95502980 95503114 -101692318 - B1_Mur4 SINE Alu -14 136 1 1 1313 256 190 306 71 chr1 95503116 95503201 -101692231 + PB1D9 SINE Alu 13 117 -3 1 1313 307 262 0 0 chr1 95503202 95503263 -101692169 + ID_B1 SINE B4 149 209 -15 1 1313 513 0 0 0 chr1 95503487 95503544 -101691888 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 1 1313 312 128 0 0 chr1 95503549 95503596 -101691836 - B2_Mm2 SINE B2 -58 137 91 1 1313 1151 49 28 0 chr1 95504718 95504861 -101690571 - B1_Mus1 SINE Alu 0 148 2 1 1313 359 253 0 0 chr1 95505000 95505075 -101690357 + PB1 SINE Alu 1 75 -52 1 1313 309 247 82 47 chr1 95505073 95505158 -101690274 - B3A SINE B2 -69 129 42 1 1313 721 233 62 31 chr1 95505572 95505762 -101689670 + B3A SINE B2 1 186 -30 1 1313 360 0 0 0 chr1 95505762 95505802 -101689630 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1313 700 240 55 64 chr1 95505802 95505829 -101689603 + B3 SINE B2 187 216 0 1 1313 871 133 21 14 chr1 95506118 95506263 -101689169 + B1_Mur3 SINE Alu 2 147 -2 2 1313 396 211 115 0 chr1 95506749 95506853 -101688579 - L1MB7 LINE L1 -42 6142 6027 2 1313 1370 47 35 0 chr1 95506857 95507029 -101688403 + B2_Mm2 SINE B2 1 178 -17 2 1313 611 244 0 6 chr1 95507034 95507049 -101688383 + G-rich Low_complexity Low_complexity 4 18 0 2 1313 441 0 0 0 chr1 95507049 95507098 -101688334 + (CAGGA)n Simple_repeat Simple_repeat 2 50 0 2 1313 611 244 0 6 chr1 95507098 95507251 -101688181 + G-rich Low_complexity Low_complexity 19 171 0 2 1313 314 197 26 0 chr1 95507234 95507310 -101688122 + A-rich Low_complexity Low_complexity 1 78 0 2 1313 437 219 67 0 chr1 95507411 95507516 -101687916 + PB1D7 SINE Alu 1 112 -8 2 1313 380 289 98 22 chr1 95507548 95507732 -101687700 - L1M4 LINE L1 -918 5228 5031 2 1313 622 155 32 72 chr1 95507748 95507873 -101687559 - ID_B1 SINE B4 -3 221 102 2 1313 300 281 71 19 chr1 95507873 95508010 -101687422 - L1M4 LINE L1 -1201 4945 4754 2 1313 623 230 0 0 chr1 95508262 95508375 -101687057 - B1_Mur1 SINE Alu -36 113 1 3 1313 389 297 121 30 chr1 95508721 95508853 -101686579 + RSINE1 SINE B4 2 145 -20 3 1313 958 33 0 24 chr1 95510010 95510135 -101685297 + RMER17A2 LTR ERVK 1 122 -784 3 1313 722 228 115 17 chr1 95510440 95510614 -101684818 + B3A SINE B2 2 192 -6 3 1313 744 238 37 6 chr1 95510640 95510801 -101684631 + B3 SINE B2 48 213 -3 3 1313 1167 111 55 6 chr1 95511447 95511629 -101683803 + B2_Mm2 SINE B2 5 195 0 3 1313 848 306 29 62 chr1 95511766 95512041 -101683391 - B4A SINE B4 0 292 27 3 1313 564 188 116 36 chr1 95512254 95512392 -101683040 - B1_Mur2 SINE Alu 0 149 1 3 1313 907 271 5 10 chr1 95512415 95512609 -101682823 - B3A SINE B2 0 198 6 3 1313 220 27 54 0 chr1 95512993 95513030 -101682402 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1313 1172 44 0 0 chr1 95513030 95513167 -101682265 - B1_Mus1 SINE Alu -10 138 2 4 1313 1246 61 79 0 chr1 95514471 95514635 -101680797 - B2_Mm2 SINE B2 -18 177 1 4 1313 796 191 43 0 chr1 95516453 95516594 -101678838 + B1_Mus2 SINE Alu 1 147 0 4 1313 460 256 50 28 chr1 95517413 95517554 -101677878 - RSINE1 SINE B4 -16 149 6 4 1313 568 221 174 0 chr1 95517559 95517731 -101677701 - B4A SINE B4 -62 230 29 4 1313 1286 27 0 0 chr1 95519208 95519355 -101676077 - B1_Mus1 SINE Alu 0 148 2 4 1313 273 294 0 0 chr1 95523348 95523416 -101672016 + ID4_ SINE ID 3 70 -13 4 1313 269 253 187 0 chr1 95524454 95524529 -101670903 + PB1D10 SINE Alu 1 89 -28 4 1313 431 278 13 65 chr1 95524531 95524685 -101670747 + B3A SINE B2 52 197 -1 4 1313 400 206 120 30 chr1 95524735 95524816 -101670616 + B1_Mur2 SINE Alu 41 125 -24 4 1313 1034 50 48 41 chr1 95524816 95524963 -101670469 + B1_Mus1 SINE Alu 1 148 0 5 1313 400 206 120 30 chr1 95524963 95524981 -101670451 + B1_Mur2 SINE Alu 126 149 0 4 1313 231 121 0 0 chr1 95524982 95525015 -101670417 + PB1D9 SINE Alu 82 114 -6 5 1313 473 190 24 12 chr1 95525059 95525144 -101670288 + B1_Mur2 SINE Alu 9 94 -55 5 1313 258 300 65 150 chr1 95526248 95526290 -101669142 + B3A SINE B2 2 47 -151 5 1313 1259 35 0 0 chr1 95526290 95526435 -101668997 + B1_Mus1 SINE Alu 4 148 0 5 1313 258 290 129 40 chr1 95526435 95526561 -101668871 + B3A SINE B2 27 145 -50 5 1313 198 0 0 0 chr1 95526566 95526588 -101668844 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1313 1091 88 0 0 chr1 95526626 95526763 -101668669 + B1_Mus2 SINE Alu 1 137 -10 5 1313 225 0 0 0 chr1 95526792 95526817 -101668615 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1313 705 213 7 7 chr1 95527410 95527547 -101667885 + RSINE1 SINE B4 1 137 -28 5 1313 395 225 25 0 chr1 95527584 95527664 -101667768 + ID4_ SINE ID 2 83 0 5 1313 394 221 212 42 chr1 95528217 95528382 -101667050 + B2_Mm2 SINE B2 1 193 -2 6 1313 1266 41 0 0 chr1 95528384 95528530 -101666902 + B1_Mus2 SINE Alu 2 147 0 6 1313 249 221 0 0 chr1 95528533 95528601 -101666831 + A-rich Low_complexity Low_complexity 1 68 0 6 1313 510 256 39 16 chr1 95528603 95528730 -101666702 + RSINE1 SINE B4 1 130 -35 6 1313 1280 34 0 0 chr1 95528802 95528949 -101666483 - B1_Mm SINE Alu 0 147 1 6 1313 1276 103 37 16 chr1 95528978 95529166 -101666266 + B2_Mm2 SINE B2 1 192 -3 6 1313 200 174 143 6 chr1 95532780 95532856 -101662576 + MIR SINE MIR 91 186 -90 6 1313 420 324 69 17 chr1 95533422 95533595 -101661837 - B3A SINE B2 -15 183 2 6 1313 516 215 9 27 chr1 95533600 95533710 -101661722 - B1F SINE Alu 0 149 42 6 1313 204 0 0 156 chr1 95533713 95533809 -101661623 + (CTCTG)n Simple_repeat Simple_repeat 5 85 0 6 1313 212 88 0 56 chr1 95533810 95533846 -101661586 - B1_Mus1 SINE Alu -88 60 27 7 1313 239 250 0 0 chr1 95533814 95533862 -101661570 - PB1D7 SINE Alu -63 57 10 7 1313 1034 204 9 23 chr1 95534001 95534217 -101661215 + B3 SINE B2 1 213 -3 7 1313 1753 167 25 10 chr1 95534223 95534572 -101660860 - MTC LTR MaLR 0 421 51 7 1313 2464 73 6 0 chr1 95534572 95534889 -101660543 + ORR1A2 LTR MaLR 1 319 -8 7 1313 243 258 86 128 chr1 95534900 95535087 -101660345 + RLTR12B LTR ERVK 179 357 -171 7 1313 867 210 14 138 chr1 95535296 95535513 -101659919 + Lx6 LINE L1 7014 7197 -263 7 1313 1117 63 21 0 chr1 95535513 95535656 -101659776 - B1_Mus1 SINE Alu 0 148 3 7 1313 464 177 9 236 chr1 95535656 95535757 -101659675 + Lx6 LINE L1 7463 7545 -151 7 1313 1479 62 0 25 chr1 95535772 95535970 -101659462 - B2_Mm2 SINE B2 -1 194 2 7 1313 433 115 25 37 chr1 95536074 95536155 -101659277 + B3 SINE B2 137 216 0 7 1313 3335 221 48 74 chr1 95536165 95536230 -101659202 - MTC-int LTR MaLR -112 986 930 8 1313 1538 58 0 5 chr1 95536230 95536421 -101659011 + B2_Mm1t SINE B2 2 191 -2 8 1313 3435 208 34 65 chr1 95536421 95536838 -101658594 - MTC-int LTR MaLR -169 929 503 8 1313 2557 43 75 0 chr1 95536838 95537160 -101658272 + ORR1A1 LTR MaLR 1 346 0 8 1313 3435 184 6 47 chr1 95537160 95537690 -101657742 - MTC-int LTR MaLR -755 503 1 8 1313 277 200 0 0 chr1 95537700 95537760 -101657672 + RLTR11A LTR ERVK 1 60 -468 8 1313 1418 208 71 3 chr1 95537801 95538110 -101657322 + RLTR11A LTR ERVK 158 487 -41 8 1313 2137 177 97 10 chr1 95538167 95538550 -101656882 - MTC LTR MaLR -5 416 1 8 1313 732 257 105 27 chr1 95538609 95538892 -101656540 + RLTR12B LTR ERVK 10 261 -267 8 1313 1042 126 49 6 chr1 95538945 95539128 -101656304 + B2_Mm2 SINE B2 2 192 -3 8 1313 290 243 38 19 chr1 95539301 95539406 -101656026 + BGLII_B LTR ERVK 126 232 -209 8 1313 2059 236 87 54 chr1 95539418 95539882 -101655550 + MYSERV-int LTR ERVK 2839 3336 -5623 8 1313 1154 58 0 0 chr1 95539882 95540021 -101655411 + B1_Mus2 SINE Alu 1 139 -8 8 1313 2059 236 87 54 chr1 95540021 95540330 -101655102 + MYSERV-int LTR ERVK 3337 3637 -5322 8 1313 1358 73 28 24 chr1 95540332 95540613 -101654819 + L1_Mus3 LINE L1 6411 6638 0 8 1313 1165 82 0 0 chr1 95540615 95540761 -101654671 + B1_Mus1 SINE Alu 1 146 -2 9 1313 8341 90 11 46 chr1 95540809 95541957 -101653475 + MusHAL1 LINE L1 800 1931 -781 9 1313 1220 55 7 0 chr1 95541957 95542103 -101653329 + B1_Mus2 SINE Alu 1 147 0 9 1313 8341 90 11 46 chr1 95542103 95542286 -101653146 + MusHAL1 LINE L1 1932 2085 -627 9 1313 418 198 69 10 chr1 95542362 95542464 -101652968 + MYSERV-int LTR ERVK 4749 4856 -1694 8 1313 1202 49 7 0 chr1 95542483 95542626 -101652806 + B1_Mus1 SINE Alu 5 148 0 9 1313 407 173 0 133 chr1 95542653 95542667 -101652765 + ID_B1 SINE B4 121 224 0 9 1313 840 57 0 0 chr1 95542667 95542773 -101652659 + B1_Mus2 SINE Alu 42 147 0 9 1313 1225 222 38 11 chr1 95542801 95543065 -101652367 + MYSERV-int LTR ERVK 4852 5122 -1428 8 1313 381 234 60 100 chr1 95543066 95543268 -101652164 + RMER4B LTR ERVK 246 543 -42 9 1313 2974 207 63 24 chr1 95543276 95543901 -101651531 + MYSERV-int LTR ERVK 5319 5967 -583 8 1313 1870 135 82 0 chr1 95543901 95544205 -101651227 + ORR1A4 LTR MaLR 1 329 0 9 1313 2974 207 63 24 chr1 95544205 95544293 -101651139 + MYSERV-int LTR ERVK 5968 6060 -490 8 1313 2115 144 6 30 chr1 95544297 95544633 -101650799 - ORR1B2 LTR MaLR -39 328 1 9 1313 259 296 121 141 chr1 95544684 95544912 -101650520 - MLT1G3 LTR MaLR -337 258 35 9 1313 324 231 39 0 chr1 95544912 95544990 -101650442 - ID4 SINE ID -1 82 2 1 1313 259 296 121 141 chr1 95544990 95545009 -101650423 - MLT1G3 LTR MaLR -561 34 16 9 1313 442 265 80 7 chr1 95545117 95545254 -101650178 - B1_Mur1 SINE Alu -1 148 2 1 1313 198 0 0 0 chr1 95545346 95545368 -101650064 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1313 782 133 62 0 chr1 95545369 95545497 -101649935 - B1_Mur4 SINE Alu -14 136 1 1 1313 405 288 80 0 chr1 95545745 95545870 -101649562 + B4A SINE B4 9 143 -149 1 1313 344 71 18 0 chr1 95545870 95545926 -101649506 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 1 1313 686 273 12 24 chr1 95545928 95546097 -101649335 + B4A SINE B4 126 292 0 1 1313 199 89 0 82 chr1 95546098 95546147 -101649285 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1 1313 282 148 0 0 chr1 95546180 95546209 -101649223 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1313 243 0 0 0 chr1 95546209 95546236 -101649196 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1313 282 148 0 0 chr1 95546236 95546267 -101649165 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1313 183 115 0 71 chr1 95546735 95546791 -101648641 + CT-rich Low_complexity Low_complexity 2 53 0 1 1313 414 0 0 0 chr1 95546894 95546940 -101648492 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1313 330 337 10 10 chr1 95546942 95547041 -101648391 - ID_B1 SINE B4 -71 153 55 1 1313 398 336 47 27 chr1 95547045 95547302 -101648130 - L1M3 LINE L1 -1021 5119 4858 1 1313 1113 106 60 16 chr1 95547329 95547512 -101647920 - B2_Mm2 SINE B2 0 195 5 1 1313 323 302 73 94 chr1 95547548 95547748 -101647684 - MLT1A1 LTR MaLR 0 408 155 1 1313 339 280 70 0 chr1 95547762 95547862 -101647570 - MLT1A1 LTR MaLR -299 109 3 1 1313 1095 90 0 0 chr1 95547884 95548029 -101647403 + B1_Mus2 SINE Alu 3 147 0 1 1313 204 125 0 0 chr1 95548029 95548061 -101647371 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1313 551 226 12 59 chr1 95548068 95548214 -101647218 - L1M3 LINE L1 -1314 4826 4682 1 1313 1177 192 14 9 chr1 95548214 95548429 -101647003 - B3 SINE B2 0 216 1 1 1313 551 226 12 59 chr1 95548429 95548451 -101646981 - L1M3 LINE L1 -1459 4681 4666 1 1313 330 311 48 0 chr1 95548483 95548586 -101646846 - PB1D7 SINE Alu -1 119 12 1 1313 618 238 20 7 chr1 95548595 95548747 -101646685 - L1M3 LINE L1 -1432 4708 4555 1 1313 766 159 71 0 chr1 95548841 95548967 -101646465 + B1_Mus1 SINE Alu 2 136 -12 1 1313 426 39 0 0 chr1 95548970 95549022 -101646410 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 1313 1144 69 14 0 chr1 95549075 95549220 -101646212 + B1_Mm SINE Alu 1 147 0 1 1313 603 191 23 2 chr1 95549275 95549391 -101646041 - B1_Mur4 SINE Alu -7 143 17 1 1313 220 200 0 104 chr1 95549332 95549399 -101646033 + B1_Mur1 SINE Alu 77 136 -13 1 1313 183 42 0 0 chr1 95549399 95549423 -101646009 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1313 2482 144 138 9 chr1 95549437 95549892 -101645540 + RLTR12B LTR ERVK 1 514 -14 1 1313 1469 220 172 57 chr1 95550505 95550982 -101644450 - MT2A LTR ERVL 0 533 2 1 1313 198 209 0 0 chr1 95551310 95551353 -101644079 + GA-rich Low_complexity Low_complexity 2 44 0 1 1314 225 0 0 0 chr1 95551964 95551989 -101643443 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1314 1272 47 0 0 chr1 95551989 95552137 -101643295 - B1_Mus1 SINE Alu 0 148 1 1 1314 318 224 0 15 chr1 95552279 95552354 -101643078 + B1_Mur1 SINE Alu 59 132 -17 1 1314 547 250 27 41 chr1 95552453 95552599 -101642833 + RSINE1 SINE B4 1 144 -21 1 1314 651 315 0 0 chr1 95552677 95552820 -101642612 + RSINE1 SINE B4 2 144 -21 1 1314 436 272 123 0 chr1 95552879 95552993 -101642439 + ID_B1 SINE B4 92 219 -5 1 1314 648 253 110 22 chr1 95553153 95553335 -101642097 - B3A SINE B2 0 198 1 1 1314 1484 58 5 5 chr1 95554045 95554234 -101641198 + B2_Mm1t SINE B2 2 190 -3 1 1314 312 137 0 0 chr1 95554764 95554815 -101640617 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1314 2567 149 48 38 chr1 95554824 95555298 -101640134 - RMER19B LTR ERVK -28 874 396 1 1314 2418 28 3 3 chr1 95555298 95555588 -101639844 + MTA_Mm LTR MaLR 1 290 -106 1 1314 2840 52 3 0 chr1 95555591 95555934 -101639498 + ORR1A1 LTR MaLR 3 346 0 1 1314 1305 185 179 11 chr1 95555934 95556272 -101639160 - RMER19B LTR ERVK -504 398 34 1 1314 294 347 72 8 chr1 95556357 95556482 -101638950 - RSINE1 SINE B4 -14 151 19 1 1314 775 191 35 7 chr1 95556512 95556654 -101638778 - B1_Mus1 SINE Alu -2 146 1 1 1314 850 236 66 115 chr1 95556735 95557231 -101638201 + RLTR12B LTR ERVK 42 485 -43 1 1314 350 262 12 0 chr1 95557312 95557392 -101638040 - B4A SINE B4 -119 173 93 1 1314 1414 34 51 6 chr1 95557406 95557584 -101637848 - B2_Mm2 SINE B2 -9 186 1 1 1314 1531 139 65 57 chr1 95557743 95557977 -101637455 - RMER6C LTR ERVK 0 690 468 1 1314 1413 86 11 5 chr1 95557977 95558165 -101637267 - B2_Mm2 SINE B2 -6 189 1 1 1314 1531 139 65 57 chr1 95558165 95558266 -101637166 - RMER6C LTR ERVK -223 467 352 1 1314 748 200 44 0 chr1 95558249 95558409 -101637023 - RMER6C LTR ERVK -522 168 2 1 1314 259 264 0 0 chr1 95558419 95558472 -101636960 - B4A SINE B4 -238 54 2 1 1314 713 213 179 5 chr1 95558520 95558704 -101636728 + B3 SINE B2 1 216 0 1 1314 836 240 0 54 chr1 95558716 95558919 -101636513 - B3A SINE B2 -6 192 1 1 1314 563 260 63 31 chr1 95558965 95559124 -101636308 + B3 SINE B2 1 164 -52 1 1314 1195 204 69 7 chr1 95559072 95559334 -101636098 - ORR1D1 LTR MaLR -95 264 1 1 1314 249 243 130 70 chr1 95559334 95559426 -101636006 + B3 SINE B2 115 213 -3 1 1314 2688 115 94 21 chr1 95559494 95559964 -101635468 - RMER6A LTR ERVK -252 504 1 1 1314 1309 167 67 17 chr1 95560190 95560428 -101635004 - RMER4A LTR ERVK -33 552 303 1 1314 727 261 37 41 chr1 95560437 95560460 -101634972 + RLTR11A2 LTR ERVK 1 17 -510 1 1314 995 64 226 13 chr1 95560460 95560619 -101634813 - B2_Mm2 SINE B2 -1 194 2 1 1314 828 219 182 36 chr1 95560619 95561058 -101634374 + RLTR11A2 LTR ERVK 18 527 0 1 1314 1351 162 94 8 chr1 95561058 95561316 -101634116 - RMER4A LTR ERVK -185 281 1 1 1314 1219 62 0 0 chr1 95561386 95561532 -101633900 - B1_Mus1 SINE Alu -1 147 2 1 1314 4174 184 76 44 chr1 95561532 95562390 -101633042 - RMER19B LTR ERVK -17 885 1 1 1314 210 71 0 0 chr1 95565582 95565610 -101629822 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1314 272 136 97 48 chr1 95566264 95566326 -101629106 - MLT1D LTR MaLR -20 485 421 1 1314 256 260 182 54 chr1 95566519 95566722 -101628710 - MLT1D LTR MaLR -206 299 71 1 1314 942 143 0 39 chr1 95566938 95567091 -101628341 - B1_Mus1 SINE Alu -1 147 1 1 1314 295 233 47 27 chr1 95567316 95567466 -101627966 + (CA)n Simple_repeat Simple_repeat 1 153 0 1 1314 287 177 0 16 chr1 95567570 95567633 -101627799 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1314 473 246 90 0 chr1 95567706 95567840 -101627592 + RSINE1 SINE B4 4 149 -16 1 1314 222 233 31 62 chr1 95567926 95567990 -101627442 - PB1D7 SINE Alu 0 120 59 1 1314 370 240 61 88 chr1 95567936 95568050 -101627382 - ID_B1 SINE B4 -8 216 106 1 1314 700 272 26 22 chr1 95568063 95568292 -101627140 + MLT1C LTR MaLR 7 236 -231 1 1314 212 132 0 50 chr1 95568577 95568617 -101626815 + A-rich Low_complexity Low_complexity 2 39 0 1 1314 549 171 0 54 chr1 95568775 95568886 -101626546 - PB1D10 SINE Alu -12 105 1 1 1314 234 91 0 0 chr1 95568925 95568958 -101626474 + (GGA)n Simple_repeat Simple_repeat 3 35 0 1 1314 1056 215 19 9 chr1 95569321 95569532 -101625900 + ID_B1 SINE B4 5 217 -7 1 1314 751 264 173 42 chr1 95569551 95569778 -101625654 + B4 SINE B4 2 259 -33 1 1314 1778 149 164 6 chr1 95569778 95570096 -101625336 - ORR1B1 LTR MaLR 0 394 27 1 1314 315 322 106 83 chr1 95570099 95570316 -101625116 - RMER13A LTR ERVK -12 848 627 1 1314 598 225 215 101 chr1 95570292 95570678 -101624754 - RMER13A LTR ERVK -430 430 1 1 1314 225 143 24 0 chr1 95570678 95570718 -101624714 - ORR1B1 LTR MaLR -351 43 3 1 1314 284 326 0 0 chr1 95570740 95570829 -101624603 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1314 3576 40 31 5 chr1 95570839 95571264 -101624168 - RLTR10C LTR ERVK 0 436 1 1 1314 2187 82 53 3 chr1 95571863 95572167 -101623265 - ORR1A2 LTR MaLR -8 319 1 1 1314 610 241 13 58 chr1 95572169 95572323 -101623109 + B3A SINE B2 49 195 -3 1 1314 1249 34 7 0 chr1 95572328 95572474 -101622958 + B1_Mm SINE Alu 1 147 0 1 1314 476 16 16 0 chr1 95572690 95572751 -101622681 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 1 1314 387 0 0 0 chr1 95572850 95572893 -101622539 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1 1314 325 125 0 100 chr1 95572901 95572972 -101622460 - B2_Mm2 SINE B2 -107 109 47 1 1314 1225 109 35 0 chr1 95573060 95573234 -101622198 - B2_Mm1t SINE B2 -11 182 3 1 1314 315 237 176 8 chr1 95573922 95574041 -101621391 - HAL1-3A_ME LINE L1 -745 2113 1975 1 1314 854 124 171 7 chr1 95574114 95574260 -101621172 + ORR1B1 LTR MaLR 3 172 -222 1 1314 1052 264 138 13 chr1 95574265 95574532 -101620900 + MTE2b LTR MaLR 18 302 -77 1 1314 180 0 0 0 chr1 95574532 95574552 -101620880 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 1 1314 1052 264 138 13 chr1 95574552 95574602 -101620830 + MTE2b LTR MaLR 303 374 -5 1 1314 315 0 0 0 chr1 95574814 95574849 -101620583 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1314 243 0 0 0 chr1 95574849 95574876 -101620556 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1 1314 435 19 0 0 chr1 95575003 95575055 -101620377 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1314 388 289 11 13 chr1 95575055 95575168 -101620264 - B1F1 SINE Alu -9 108 1 1 1314 244 323 0 0 chr1 95575269 95575334 -101620098 + B4A SINE B4 82 146 -146 1 1314 1101 179 105 5 chr1 95575354 95575573 -101619859 - MTD LTR MaLR 0 419 179 1 1314 387 233 13 27 chr1 95576618 95576693 -101618739 - B1_Mur3 SINE Alu -73 76 3 1 1314 294 206 0 73 chr1 95576635 95576703 -101618729 - B4 SINE B4 -149 143 81 1 1314 189 0 0 0 chr1 95576703 95576724 -101618708 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1314 406 252 112 0 chr1 95576724 95576831 -101618601 - PB1D7 SINE Alu 0 120 2 1 1314 829 208 19 71 chr1 95577257 95577469 -101617963 + B3 SINE B2 11 211 -5 1 1314 941 25 8 8 chr1 95577466 95577587 -101617845 + B1_Mm SINE Alu 26 146 -1 2 1314 299 172 47 0 chr1 95577631 95577695 -101617737 - B1F2 SINE Alu -81 68 2 2 1314 319 206 96 113 chr1 95577718 95577748 -101617684 - B3A SINE B2 0 198 174 2 1314 2466 129 408 99 chr1 95577748 95578434 -101616998 - RMER19B LTR ERVK 0 902 5 2 1314 540 0 0 0 chr1 95578434 95578494 -101616938 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1314 319 206 96 113 chr1 95578494 95578577 -101616855 - B3A SINE B2 -25 173 87 2 1314 345 292 104 23 chr1 95578638 95578800 -101616632 - L1M5 LINE L1 -2455 3691 3514 2 1314 1620 188 89 20 chr1 95578800 95579148 -101616284 + ORR1D1 LTR MaLR 1 372 -2 2 1314 345 292 104 23 chr1 95579148 95579244 -101616188 - L1M5 LINE L1 -2633 3513 3412 2 1314 768 62 29 52 chr1 95579331 95579777 -101615655 + (TG)n Simple_repeat Simple_repeat 1 435 0 2 1314 593 256 40 96 chr1 95579838 95580037 -101615395 + RLTR18 LTR ERVK 9 196 -316 2 1314 1122 118 0 12 chr1 95580165 95580336 -101615096 - B2_Mm2 SINE B2 -25 170 2 2 1314 635 253 155 60 chr1 95580336 95580583 -101614849 + RLTR18 LTR ERVK 346 616 0 2 1314 342 311 148 7 chr1 95580583 95580732 -101614700 - B4A SINE B4 -48 244 75 2 1314 568 284 119 25 chr1 95580739 95580778 -101614654 - L1M5 LINE L1 -3193 2953 2919 2 1314 878 181 5 76 chr1 95580778 95580975 -101614457 + B2_Mm2 SINE B2 2 184 -11 2 1314 568 284 119 25 chr1 95580975 95581253 -101614179 - L1M5 LINE L1 -3228 2918 2606 2 1314 228 86 0 0 chr1 95581530 95581565 -101613867 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 1314 577 170 28 9 chr1 95581807 95581914 -101613518 - B3 SINE B2 -1 215 107 2 1314 22 35 0 0 chr1 95582301 95582330 -101613102 + GC_rich Low_complexity Low_complexity 1 29 0 2 1314 233 258 0 46 chr1 95585342 95585407 -101610025 + (CCTG)n Simple_repeat Simple_repeat 2 63 0 2 1314 857 131 64 14 chr1 95586124 95586264 -101609168 - B1_Mm SINE Alu 0 147 1 2 1314 198 71 0 0 chr1 95586297 95586325 -101609107 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1314 525 309 22 0 chr1 95586338 95586474 -101608958 - RSINE1 SINE B4 -24 141 3 2 1314 207 0 0 0 chr1 95586645 95586668 -101608764 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1314 253 261 53 21 chr1 95587819 95587913 -101607519 + L1M4 LINE L1 5495 5591 -587 2 1314 235 279 148 16 chr1 95588454 95588636 -101606796 - L1MB7 LINE L1 -159 6025 5820 2 1314 234 0 0 0 chr1 95588887 95588913 -101606519 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1314 781 204 38 19 chr1 95589033 95589193 -101606239 - B4A SINE B4 -129 163 1 2 1314 430 228 140 45 chr1 95589381 95589560 -101605872 - B3A SINE B2 -2 196 1 2 1314 315 247 35 58 chr1 95589564 95589650 -101605782 - ID_B1 SINE B4 -9 215 132 2 1314 811 315 43 21 chr1 95589769 95590048 -101605384 - B4A SINE B4 -2 290 6 2 1314 198 0 0 0 chr1 95590184 95590206 -101605226 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1314 312 27 0 0 chr1 95591077 95591114 -101604318 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1314 1264 34 0 7 chr1 95591114 95591262 -101604170 - B1_Mus2 SINE Alu 0 147 1 2 1314 1130 62 14 7 chr1 95592563 95592709 -101602723 + B1_Mus2 SINE Alu 1 147 0 2 1314 327 312 117 12 chr1 95593580 95593742 -101601690 + ERVL-E-int LTR ERVL 274 452 -5215 2 1314 590 262 35 0 chr1 95594301 95594442 -101600990 - B1_Mur2 SINE Alu -3 146 1 2 1314 3027 65 15 15 chr1 95594669 95595074 -101600358 - L1_Mus2 LINE L1 0 6566 6162 2 1314 307 311 82 25 chr1 95596703 95596825 -101598607 + L1MC LINE L1 5553 5681 -2201 2 1314 385 264 113 32 chr1 95597694 95597849 -101597583 - B3A SINE B2 -29 169 3 2 1314 495 48 0 0 chr1 95597955 95598017 -101597415 + (TATG)n Simple_repeat Simple_repeat 1 62 0 2 1314 596 269 13 60 chr1 95598021 95598171 -101597261 - B3A SINE B2 -46 152 10 2 1314 378 209 76 11 chr1 95598177 95598269 -101597163 - B1_Mur2 SINE Alu -51 98 1 2 1314 730 237 92 6 chr1 95598298 95598472 -101596960 - B3A SINE B2 -8 190 2 2 1314 464 324 43 14 chr1 95598485 95598626 -101596806 - B4A SINE B4 -46 246 102 2 1314 248 298 110 90 chr1 95598622 95598721 -101596711 - RMER15 LTR ERVL -6 569 462 2 1314 2340 151 59 44 chr1 95598721 95598946 -101596486 - RMER4A LTR ERVK 0 466 241 2 1314 225 0 0 0 chr1 95598946 95598971 -101596461 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1314 1147 75 0 20 chr1 95598972 95599122 -101596310 - B1_Mus1 SINE Alu 0 148 2 2 1314 2340 151 59 44 chr1 95599122 95599352 -101596080 - RMER4A LTR ERVK -226 240 2 2 1314 248 298 110 90 chr1 95599352 95599407 -101596025 - RMER15 LTR ERVL -114 461 412 2 1314 423 0 0 0 chr1 95599831 95599878 -101595554 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2 1314 1067 104 0 0 chr1 95599895 95600030 -101595402 - B1_Mus1 SINE Alu -13 135 1 2 1314 835 243 82 0 chr1 95600385 95600591 -101594841 + ID_B1 SINE B4 1 223 -1 2 1314 285 246 0 55 chr1 95601607 95601621 -101593811 + B4A SINE B4 78 87 -205 2 1314 493 218 0 0 chr1 95601621 95601708 -101593724 + PB1D10 SINE Alu 3 89 -28 2 1314 227 167 217 43 chr1 95601756 95601825 -101593607 + ID4 SINE ID 1 81 -2 2 1314 460 254 213 0 chr1 95602289 95602411 -101593021 + B1F1 SINE Alu 2 149 0 2 1314 299 164 0 83 chr1 95602986 95603046 -101592386 + B3A SINE B2 1 55 -143 2 1314 507 73 0 0 chr1 95603060 95603128 -101592304 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 2 1314 1142 123 41 6 chr1 95603131 95603303 -101592129 - B2_Mm2 SINE B2 -16 179 2 2 1314 649 215 59 0 chr1 95603357 95603492 -101591940 + ID_B1 SINE B4 1 143 -81 2 1314 324 0 0 0 chr1 95603521 95603557 -101591875 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1314 6695 236 98 74 chr1 95603853 95604701 -101590731 + L1_Mur3 LINE L1 1008 1908 -3972 2 1314 1084 50 43 7 chr1 95604701 95604842 -101590590 - B1_Mm SINE Alu 0 147 2 2 1314 6695 224 90 79 chr1 95604842 95605091 -101590341 + L1_Mur3 LINE L1 1909 2123 -3757 2 1314 973 238 24 5 chr1 95605091 95605298 -101590134 - B3 SINE B2 -5 211 1 2 1314 6695 225 90 79 chr1 95605298 95607201 -101588231 + L1_Mur3 LINE L1 2124 4091 -2055 2 1314 244 232 18 0 chr1 95607206 95607249 -101588183 + MTD LTR MaLR 2 45 -376 2 1314 1333 7 0 0 chr1 95607249 95607395 -101588037 + B1_Mm SINE Alu 2 147 0 2 1314 244 232 18 0 chr1 95607395 95607407 -101588025 + MTD LTR MaLR 46 57 -364 2 1314 325 145 0 46 chr1 95607415 95607480 -101587952 + MTD LTR MaLR 32 93 -326 2 1314 316 191 155 0 chr1 95607481 95607565 -101587867 + L1_Mur3 LINE L1 5032 5128 -752 2 1314 1565 47 16 0 chr1 95607782 95607973 -101587459 + B2_Mm2 SINE B2 2 195 0 2 1314 391 188 185 73 chr1 95608149 95608327 -101587105 - B3A SINE B2 0 198 1 2 1314 219 36 0 0 chr1 95608871 95608899 -101586533 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1314 422 242 96 22 chr1 95609979 95610114 -101585318 + B1_Mm SINE Alu 3 147 0 2 1314 1172 75 0 0 chr1 95610265 95610411 -101585021 - B1_Mus2 SINE Alu 0 147 2 2 1314 1271 53 129 0 chr1 95610544 95610715 -101584717 + B2_Mm2 SINE B2 3 195 0 2 1314 434 244 12 0 chr1 95611827 95611909 -101583523 - B4A SINE B4 -209 83 1 2 1314 419 260 10 46 chr1 95611917 95612028 -101583404 - PB1 SINE Alu -7 120 16 2 1314 522 192 106 0 chr1 95613511 95613615 -101581817 - PB1D9 SINE Alu -1 119 5 2 1314 321 252 252 0 chr1 95613800 95613923 -101581509 + RMER15 LTR ERVL 422 575 0 2 1314 1469 316 58 26 chr1 95614047 95614673 -101580759 + RMER15-int LTR ERVL 153 798 -4201 2 1314 400 202 128 0 chr1 95614757 95614866 -101580566 + RMER15-int LTR ERVL 921 1043 -3956 2 1314 614 248 130 0 chr1 95614879 95615040 -101580392 + RMER15-int LTR ERVL 1081 1262 -3737 2 1314 488 318 112 32 chr1 95615343 95615655 -101579777 + RMER15-int LTR ERVL 1611 1947 -3052 2 1314 1232 97 23 0 chr1 95615661 95615836 -101579596 + B2_Mm1t SINE B2 1 179 -14 2 1314 383 109 36 0 chr1 95615849 95615952 -101579480 + B2_Mm2 SINE B2 47 188 -7 2 1314 443 314 34 34 chr1 95615996 95616171 -101579261 + RMER15-int LTR ERVL 2022 2196 -2803 2 1314 455 234 21 0 chr1 95616185 95616279 -101579153 + RMER15-int LTR ERVL 2294 2389 -2610 2 1314 1520 288 117 41 chr1 95616354 95617079 -101578353 + RMER15-int LTR ERVL 4215 4994 -5 2 1314 502 265 156 15 chr1 95617336 95617535 -101577897 + RMER15 LTR ERVL 336 562 -13 2 1314 279 0 0 0 chr1 95617544 95617575 -101577857 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1314 435 128 291 0 chr1 95617904 95617990 -101577442 - B1_Mus1 SINE Alu -16 132 22 2 1314 463 211 10 10 chr1 95617999 95618095 -101577337 - PB1D9 SINE Alu -1 119 24 2 1314 219 36 0 0 chr1 95618164 95618192 -101577240 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1314 224 288 17 17 chr1 95618242 95618302 -101577130 + B1F2 SINE Alu 3 62 -87 2 1314 265 243 26 26 chr1 95618396 95618472 -101576960 + G-rich Low_complexity Low_complexity 3 78 0 2 1314 411 216 14 0 chr1 95618499 95618582 -101576850 - ID4_ SINE ID -58 94 11 2 1314 26 0 0 0 chr1 95618599 95618625 -101576807 + AT_rich Low_complexity Low_complexity 1 26 0 2 1314 995 199 29 34 chr1 95618625 95618833 -101576599 - B3 SINE B2 -9 207 1 2 1314 295 250 35 1 chr1 95618866 95618938 -101576494 - PB1D10 SINE Alu -62 87 12 2 1314 696 251 37 16 chr1 95618976 95619166 -101576266 - B3A SINE B2 -3 195 2 2 1314 656 235 105 6 chr1 95619181 95619352 -101576080 - B3 SINE B2 -25 191 4 2 1314 1300 187 117 4 chr1 95619377 95619624 -101575808 + MTD LTR MaLR 144 418 -1 2 1314 428 208 175 8 chr1 95619760 95619886 -101575546 + B1_Mur2 SINE Alu 2 148 -1 2 1314 533 264 42 14 chr1 95619962 95620104 -101575328 + B1F SINE Alu 4 149 0 2 1314 753 223 52 47 chr1 95620180 95620392 -101575040 + B3 SINE B2 2 214 -2 2 1314 585 207 94 22 chr1 95620422 95620560 -101574872 + B1_Mur2 SINE Alu 1 148 -1 2 1314 499 251 109 0 chr1 95620715 95620890 -101574542 + B3A SINE B2 1 194 -4 2 1314 632 215 8 15 chr1 95620998 95621130 -101574302 - RSINE1 SINE B4 -33 132 2 2 1314 218 297 13 54 chr1 95621183 95621289 -101574143 - ID4_ SINE ID -30 122 18 2 1314 279 0 0 0 chr1 95622655 95622686 -101572746 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1314 529 221 29 9 chr1 95622758 95622863 -101572569 - RSINE1 SINE B4 -46 119 13 2 1314 719 122 16 16 chr1 95622927 95623052 -101572380 + B2_Mm2 SINE B2 69 193 -2 2 1314 648 251 78 22 chr1 95623049 95623228 -101572204 + B3 SINE B2 28 216 0 2 1314 207 222 0 36 chr1 95624235 95624291 -101571141 + GA-rich Low_complexity Low_complexity 1 54 0 2 1314 293 322 0 0 chr1 95624390 95624477 -101570955 + RSINE1 SINE B4 25 111 -54 2 1314 347 304 35 26 chr1 95624433 95624548 -101570884 - B3A SINE B2 -81 117 2 3 1314 572 226 470 0 chr1 95624775 95625024 -101570408 + ORR1D2 LTR MaLR 5 370 0 3 1314 470 335 148 9 chr1 95625237 95625574 -101569858 + L1MB7 LINE L1 5594 5977 -207 3 1314 379 300 63 23 chr1 95625712 95625886 -101569546 + Charlie5 DNA MER1_type 2403 2583 -41 3 1314 756 232 115 5 chr1 95626517 95626708 -101568724 + B3 SINE B2 1 212 -4 3 1314 1235 92 43 0 chr1 95626717 95626901 -101568531 + B2_Mm1a SINE B2 1 192 -1 3 1314 1279 179 30 94 chr1 95629377 95629746 -101565686 + MTD LTR MaLR 6 370 0 3 1314 245 343 112 21 chr1 95629760 95629801 -101565631 + B4 SINE B4 48 101 -191 3 1314 489 261 69 8 chr1 95629801 95629932 -101565500 + B1F2 SINE Alu 4 142 -7 3 1314 351 0 0 0 chr1 95629932 95629971 -101565461 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1314 813 194 7 0 chr1 95629982 95630121 -101565311 + B1_Mur2 SINE Alu 7 146 -3 3 1314 188 35 35 0 chr1 95630134 95630163 -101565269 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1314 192 234 0 0 chr1 95630203 95630250 -101565182 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1314 1251 205 47 44 chr1 95630600 95631025 -101564407 + RLTR20A2 LTR ERVK 1 518 -50 3 1314 1033 41 12 147 chr1 95631132 95631302 -101564130 + B1_Mm SINE Alu 1 147 0 3 1314 291 274 9 104 chr1 95631342 95631448 -101563984 + L1MCa LINE L1 587 682 -5826 3 1314 1192 34 7 14 chr1 95631777 95631925 -101563507 + B1_Mus2 SINE Alu 1 147 0 3 1314 1304 7 7 0 chr1 95631950 95632096 -101563336 + B1_Mus2 SINE Alu 1 147 0 3 1314 1041 59 0 14 chr1 95632185 95632323 -101563109 + B1_Mus2 SINE Alu 10 145 -2 3 1314 207 0 0 0 chr1 95632354 95632377 -101563055 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1314 2436 103 83 93 chr1 95632416 95632887 -101562545 + RMER4A LTR ERVK 1 466 0 3 1314 335 163 90 25 chr1 95633670 95633764 -101561668 - B1_Mm SINE Alu -10 137 1 3 1314 198 0 0 0 chr1 95634208 95634230 -101561202 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1314 1171 62 0 0 chr1 95634230 95634376 -101561056 - B1_Mus1 SINE Alu -2 146 1 3 1314 435 181 72 0 chr1 95634455 95634538 -101560894 - ID_B1 SINE B4 -9 215 127 3 1314 862 176 143 0 chr1 95634830 95635012 -101560420 + B3 SINE B2 2 209 -7 3 1314 811 180 63 51 chr1 95635338 95635496 -101559936 + RSINE1 SINE B4 2 161 -4 3 1314 539 184 0 0 chr1 95635914 95636001 -101559431 - B1_Mur4 SINE Alu -63 87 1 3 1314 1396 95 5 0 chr1 95636030 95636219 -101559213 + B2_Mm1a SINE B2 1 190 -3 3 1314 195 146 0 0 chr1 95636409 95636450 -101558982 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1314 1248 34 14 0 chr1 95636462 95636608 -101558824 + B1_Mus1 SINE Alu 1 148 0 3 1314 232 204 20 39 chr1 95636634 95636685 -101558747 + RLTR25A LTR ERVK 509 558 -545 3 1314 599 189 85 23 chr1 95636758 95636888 -101558544 + B1_Mus2 SINE Alu 9 146 -1 3 1314 536 276 154 9 chr1 95636896 95637221 -101558211 + L1MC LINE L1 2392 2763 -3383 3 1314 648 280 73 102 chr1 95637564 95637852 -101557580 + L1MC LINE L1 4045 4323 -1823 3 1314 1276 41 0 0 chr1 95637852 95637999 -101557433 + B1_Mm SINE Alu 1 147 0 3 1314 648 280 73 102 chr1 95637999 95638120 -101557312 + L1MC LINE L1 4324 4442 -1704 3 1314 466 282 83 14 chr1 95638173 95638317 -101557115 - RSINE1 SINE B4 0 165 12 3 1314 543 248 46 11 chr1 95638530 95638717 -101556715 + L1MC LINE L1 4938 5139 -1007 3 1314 418 235 110 62 chr1 95639158 95639303 -101556129 + B3 SINE B2 65 216 0 3 1314 267 282 135 40 chr1 95639407 95639555 -101555877 + L1MC LINE L1 5167 5328 -818 3 1314 1087 134 22 27 chr1 95639561 95639745 -101555687 + B2_Mm2 SINE B2 1 183 -12 3 1314 335 219 27 0 chr1 95639745 95639818 -101555614 + B4 SINE B4 1 75 -217 3 1314 288 53 0 0 chr1 95639818 95639856 -101555576 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1314 1262 41 0 0 chr1 95639985 95640132 -101555300 + B1_Mus1 SINE Alu 2 148 0 3 1314 264 59 0 0 chr1 95640132 95640166 -101555266 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1314 962 166 74 15 chr1 95640169 95640371 -101555061 + B3 SINE B2 2 215 -1 3 1314 1200 91 74 0 chr1 95640389 95640550 -101554882 + B2_Mm1a SINE B2 2 175 -18 3 1314 243 0 0 0 chr1 95640550 95640577 -101554855 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1314 1200 91 74 0 chr1 95640577 95640590 -101554842 + B2_Mm1a SINE B2 176 188 -5 3 1314 1118 90 47 29 chr1 95640851 95641004 -101554428 + B2_Mm2 SINE B2 2 162 -33 3 1314 186 43 0 0 chr1 95641004 95641027 -101554405 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1314 1118 90 47 29 chr1 95641027 95641045 -101554387 + B2_Mm2 SINE B2 163 176 -19 3 1314 239 378 31 70 chr1 95641308 95641436 -101553996 + B4 SINE B4 1 123 -169 3 1314 1217 55 0 0 chr1 95641448 95641593 -101553839 - B1_Mus1 SINE Alu 0 148 4 3 1314 531 183 21 0 chr1 95641611 95641704 -101553728 - PB1D9 SINE Alu -1 119 25 3 1314 342 274 47 4 chr1 95641738 95641834 -101553598 + RSINE1 SINE B4 91 281 -11 3 1314 501 186 134 37 chr1 95643380 95643514 -101551918 + B1_Mur2 SINE Alu 3 149 0 3 1314 298 211 70 0 chr1 95643515 95643586 -101551846 + B3 SINE B2 2 77 -139 3 1314 21 36 0 0 chr1 95643755 95643783 -101551649 + AT_rich Low_complexity Low_complexity 1 28 0 3 1314 302 192 176 83 chr1 95643910 95644018 -101551414 - PB1D9 SINE Alu 0 120 3 3 1314 288 330 72 0 chr1 95644050 95644147 -101551285 + B1F SINE Alu 1 104 -45 3 1314 364 212 16 64 chr1 95644332 95644440 -101550992 + PB1D10 SINE Alu 1 108 -40 3 1314 190 42 104 0 chr1 95644443 95644491 -101550941 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 3 1314 606 32 263 0 chr1 95644530 95644625 -101550807 + B1_Mus1 SINE Alu 29 148 0 3 1314 1367 50 0 67 chr1 95644823 95645016 -101550416 - B2_Mm2 SINE B2 -15 180 1 3 1314 466 255 0 29 chr1 95645059 95645164 -101550268 + PB1D10 SINE Alu 1 102 -15 3 1314 615 196 79 7 chr1 95646113 95646252 -101549180 - B1_Mur1 SINE Alu 0 149 1 3 1314 288 0 0 0 chr1 95647828 95647860 -101547572 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1314 818 246 115 65 chr1 95647860 95648303 -101547129 + RLTR12B LTR ERVK 22 486 -42 3 1314 493 159 0 101 chr1 95648407 95648526 -101546906 + MT2B LTR ERVL 151 257 -344 3 1314 1071 77 0 0 chr1 95648428 95648571 -101546861 + B1_Mus1 SINE Alu 6 148 0 3 1314 246 336 96 0 chr1 95648791 95648895 -101546537 + B1F1 SINE Alu 1 114 -35 3 1314 302 132 0 29 chr1 95648965 95648984 -101546448 + A-rich Low_complexity Low_complexity 3 21 0 3 1314 1255 41 0 0 chr1 95648984 95649131 -101546301 + B1_Mm SINE Alu 1 147 0 3 1314 302 132 0 29 chr1 95649131 95649181 -101546251 + A-rich Low_complexity Low_complexity 22 69 0 3 1314 628 180 77 15 chr1 95649322 95649452 -101545980 + B1_Mm SINE Alu 9 146 -1 3 1314 471 147 40 0 chr1 95649465 95649540 -101545892 + B1_Mus1 SINE Alu 2 79 -69 3 1314 331 267 99 8 chr1 95649569 95649690 -101545742 + B1F SINE Alu 10 141 -8 3 1314 25 75 0 0 chr1 95650977 95651030 -101544402 + GC_rich Low_complexity Low_complexity 1 53 0 3 1314 33 0 0 0 chr1 95651410 95651443 -101543989 + GC_rich Low_complexity Low_complexity 1 33 0 3 1314 243 0 0 0 chr1 95652121 95652148 -101543284 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1314 255 61 0 0 chr1 95652261 95652294 -101543138 + (CACCC)n Simple_repeat Simple_repeat 4 36 0 3 1314 255 133 0 0 chr1 95652333 95652378 -101543054 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1314 25 51 0 0 chr1 95652620 95652659 -101542773 + AT_rich Low_complexity Low_complexity 1 39 0 3 1314 442 252 98 32 chr1 95652750 95652873 -101542559 - B1_Mur2 SINE Alu -1 148 18 3 1314 294 266 0 0 chr1 95653111 95653175 -101542257 - B1_Mur2 SINE Alu -16 133 70 3 1314 228 186 15 92 chr1 95653152 95653217 -101542215 - PB1 SINE Alu -27 100 41 3 1314 601 280 76 18 chr1 95653630 95653801 -101541631 + B3A SINE B2 2 182 -16 3 1314 738 145 38 15 chr1 95653804 95653937 -101541495 - B1_Mus2 SINE Alu -1 146 11 3 1314 425 254 20 88 chr1 95653812 95653959 -101541473 - ID_B1 SINE B4 -7 217 81 3 1314 201 291 65 80 chr1 95653999 95654137 -101541295 - L2 LINE L2 -481 2938 2803 3 1314 335 207 0 22 chr1 95654165 95654254 -101541178 - Lx9 LINE L1 -2 7642 7556 3 1314 2029 224 83 25 chr1 95654269 95654836 -101540596 - Lx9 LINE L1 -163 7481 6882 3 1314 3043 131 96 8 chr1 95655291 95655814 -101539618 - RMER4B LTR ERVK 0 585 17 3 1314 404 320 21 0 chr1 95656090 95656187 -101539245 + B4A SINE B4 3 101 -191 3 1314 378 155 99 0 chr1 95656362 95656433 -101538999 + ID4_ SINE ID 5 82 -1 3 1314 384 236 20 69 chr1 95656448 95656632 -101538800 + ID_B1 SINE B4 6 224 0 3 1314 301 287 167 21 chr1 95656658 95656754 -101538678 + PB1D7 SINE Alu 2 111 -9 3 1314 505 280 35 14 chr1 95656754 95656899 -101538533 + B1F SINE Alu 1 148 -1 3 1314 250 244 102 42 chr1 95656992 95657225 -101538207 - RLTR20A2 LTR ERVK -56 303 107 3 1314 1502 31 5 111 chr1 95657237 95657453 -101537979 - B2_Mm1t SINE B2 0 193 1 3 1314 263 250 36 0 chr1 95657548 95657604 -101537828 + ID_B1 SINE B4 133 190 -34 3 1314 940 35 0 0 chr1 95657601 95657716 -101537716 + B1_Mus1 SINE Alu 24 138 -10 3 1314 1421 106 83 21 chr1 95657775 95658016 -101537416 - Lx LINE L1 -6 6648 6393 3 1314 699 303 41 55 chr1 95658019 95658523 -101536909 - RLTR11B LTR ERVK 0 528 2 3 1314 444 276 0 0 chr1 95658573 95658667 -101536765 + ID4_ SINE ID 2 95 -57 3 1314 436 211 344 0 chr1 95658722 95658850 -101536582 + B3A SINE B2 1 172 -26 3 1314 234 0 0 0 chr1 95658857 95658883 -101536549 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1314 344 319 159 7 chr1 95659031 95659176 -101536256 - ID_B1 SINE B4 -57 167 1 4 1314 1051 116 74 11 chr1 95659316 95659491 -101535941 - B2_Mm2 SINE B2 -8 187 2 4 1314 420 200 0 0 chr1 95659546 95659621 -101535811 - PB1D10 SINE Alu -17 100 26 4 1314 2629 62 6 0 chr1 95660018 95660354 -101535078 - ORR1A0 LTR MaLR -8 338 1 4 1314 1179 44 0 0 chr1 95660412 95660549 -101534883 + B1_Mus1 SINE Alu 1 137 -11 4 1314 315 0 0 0 chr1 95660549 95660584 -101534848 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1314 1158 100 0 0 chr1 95661074 95661254 -101534178 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1314 342 0 0 0 chr1 95661254 95661292 -101534140 + (TCCCC)n Simple_repeat Simple_repeat 3 40 0 4 1314 695 12 12 0 chr1 95661292 95661376 -101534056 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1314 381 216 68 0 chr1 95661398 95661486 -101533946 - PB1D9 SINE Alu 0 120 27 4 1314 289 304 176 20 chr1 95661702 95661850 -101533582 - MIRb SINE MIR -90 178 8 4 1314 964 267 33 19 chr1 95663002 95663216 -101532216 + ID_B1 SINE B4 7 223 -1 4 1314 673 252 13 20 chr1 95663219 95663369 -101532063 + B1_Mur2 SINE Alu 1 149 0 4 1314 2362 182 47 107 chr1 95663626 95663772 -101531660 - RLTR20A2 LTR ERVK 0 578 473 4 1314 1584 52 5 0 chr1 95663772 95663963 -101531469 - B2_Mm1a SINE B2 0 193 2 4 1314 1283 27 0 0 chr1 95663967 95664114 -101531318 - B1_Mus1 SINE Alu 0 148 2 4 1314 2362 182 47 107 chr1 95664114 95664577 -101530855 - RLTR20A2 LTR ERVK -106 472 1 4 1314 582 296 82 56 chr1 95664982 95665250 -101530182 - B4 SINE B4 -16 276 2 4 1314 1315 190 95 98 chr1 95665415 95665753 -101529679 + MTD LTR MaLR 70 406 -13 4 1314 3728 171 102 81 chr1 95665760 95665944 -101529488 + RMER19B LTR ERVK 1 138 -764 4 1314 2839 50 24 0 chr1 95665944 95666282 -101529150 - ORR1A1 LTR MaLR 0 346 1 4 1314 3728 171 102 81 chr1 95666282 95666962 -101528470 + RMER19B LTR ERVK 139 883 -19 4 1314 1340 84 34 0 chr1 95666964 95667142 -101528290 + B2_Mm1t SINE B2 2 185 -8 4 1314 915 233 28 48 chr1 95667277 95667529 -101527903 - MTE2a LTR MaLR -1 378 132 4 1314 1492 68 11 0 chr1 95667556 95667747 -101527685 - B2_Mm1t SINE B2 0 193 1 4 1314 1498 194 111 21 chr1 95667865 95668002 -101527430 + ORR1D1 LTR MaLR 13 180 -194 4 1314 1550 0 0 14 chr1 95668002 95668209 -101527223 + (TCTCCC)n Simple_repeat Simple_repeat 1 203 0 4 1314 1498 194 111 21 chr1 95668209 95668402 -101527030 + ORR1D1 LTR MaLR 181 373 -1 4 1314 309 197 16 16 chr1 95668428 95668490 -101526942 - ORR1D1 LTR MaLR 0 374 313 4 1314 852 59 246 0 chr1 95668494 95668612 -101526820 + B1_Mus1 SINE Alu 2 148 0 4 1314 2725 185 71 17 chr1 95668638 95669176 -101526256 + RLTR18 LTR ERVK 44 610 -6 4 1314 1236 207 55 4 chr1 95669171 95669409 -101526023 - ORR1D1 LTR MaLR -105 269 20 4 1314 544 213 462 16 chr1 95669638 95669824 -101525608 - RMER4B LTR ERVK -9 576 308 4 1314 308 295 124 23 chr1 95670017 95670194 -101525238 - L1MC LINE L1 -2369 5513 5319 4 1314 285 305 51 31 chr1 95670454 95670552 -101524880 + ID_B1 SINE B4 29 128 -96 4 1314 1196 48 7 26 chr1 95670777 95670928 -101524504 - B1_Mus1 SINE Alu 0 148 1 4 1314 408 308 0 33 chr1 95670950 95671016 -101524416 - PB1D7 SINE Alu 0 120 57 4 1314 1912 219 42 0 chr1 95671016 95671418 -101524014 - MTD LTR MaLR 0 419 1 4 1314 408 308 0 33 chr1 95671418 95671472 -101523960 - PB1D7 SINE Alu -64 56 4 4 1314 926 211 20 20 chr1 95672710 95672913 -101522519 - B3 SINE B2 -7 209 7 4 1314 1610 212 32 53 chr1 95673316 95673690 -101521742 - ORR1D1 LTR MaLR -8 366 1 4 1314 1000 142 13 0 chr1 95674154 95674309 -101521123 + URR1A DNA MER1_type 70 226 0 4 1314 337 122 0 0 chr1 95675139 95675200 -101520232 + B1_Mur1 SINE Alu 51 143 -6 4 1314 799 248 60 15 chr1 95675213 95675414 -101520018 + B3 SINE B2 1 210 -6 4 1314 718 86 239 0 chr1 95675415 95675532 -101519900 + B1_Mus2 SINE Alu 2 146 -1 4 1314 22 0 0 0 chr1 95675691 95675713 -101519719 + AT_rich Low_complexity Low_complexity 1 22 0 4 1314 212 186 0 23 chr1 95675715 95675759 -101519673 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1314 1308 34 0 0 chr1 95675856 95676004 -101519428 + B1_Mus1 SINE Alu 1 148 0 4 1314 503 236 36 9 chr1 95676330 95676441 -101518991 - PB1D9 SINE Alu -1 119 6 4 1314 892 234 40 5 chr1 95676457 95676655 -101518777 + B3 SINE B2 8 212 -4 4 1314 696 242 135 31 chr1 95676687 95676716 -101518716 - B3 SINE B2 -4 212 187 4 1314 291 54 0 0 chr1 95676716 95676753 -101518679 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 1314 696 242 135 31 chr1 95676753 95676915 -101518517 - B3 SINE B2 -30 186 1 4 1314 1254 182 20 0 chr1 95677004 95677207 -101518225 - B3 SINE B2 -9 207 1 4 1314 1189 142 69 23 chr1 95677711 95677754 -101517678 + URR1A DNA MER1_type 1 42 -184 4 1314 3339 36 5 8 chr1 95677754 95678151 -101517281 - MTA_Mm LTR MaLR 0 396 1 4 1314 7533 75 13 81 chr1 95678151 95678211 -101517221 - MTA_Mm-int LTR MaLR 0 1098 1043 4 1314 1498 73 5 0 chr1 95678211 95678402 -101517030 - B2_Mm1a SINE B2 -1 192 1 4 1314 7533 75 13 81 chr1 95678402 95679519 -101515913 - MTA_Mm-int LTR MaLR -56 1042 1 4 1314 3159 37 45 3 chr1 95679519 95679899 -101515533 - MTA_Mm LTR MaLR 0 396 1 4 1314 1189 142 69 23 chr1 95679899 95680069 -101515363 + URR1A DNA MER1_type 43 224 -2 4 1314 1199 98 91 6 chr1 95680275 95680450 -101514982 + B2_Mm2 SINE B2 1 190 -5 4 1314 228 191 156 16 chr1 95681572 95681636 -101513796 - LTR86B2 LTR ERVL -339 148 76 4 1315 332 272 85 76 chr1 95683830 95684053 -101511379 - RLTR15 LTR ERVK -9 350 126 4 1315 1133 55 14 20 chr1 95686220 95686368 -101509064 + B1_Mus1 SINE Alu 2 148 0 4 1315 279 303 45 18 chr1 95686395 95686506 -101508926 + PB1D9 SINE Alu 1 114 -6 4 1315 380 242 170 64 chr1 95686524 95686665 -101508767 + B3A SINE B2 1 156 -42 4 1315 28 0 0 0 chr1 95687142 95687170 -101508262 + AT_rich Low_complexity Low_complexity 1 28 0 4 1315 276 222 0 0 chr1 95687188 95687233 -101508199 - B1_Mus2 SINE Alu -97 50 6 4 1315 1219 68 0 0 chr1 95687397 95687545 -101507887 - B1_Mus1 SINE Alu 0 148 1 4 1315 3533 133 79 17 chr1 95687560 95688259 -101507173 - RLTR13C1 LTR ERVK 0 983 174 4 1315 3629 62 126 23 chr1 95688259 95688791 -101506641 - LTRIS_Mus LTR ERV1 0 587 1 4 1315 1320 94 11 0 chr1 95688791 95688970 -101506462 - RLTR13C1 LTR ERVK -802 181 1 4 1315 665 184 9 0 chr1 95689780 95689894 -101505538 + B1_Mur4 SINE Alu 10 125 -25 4 1315 1177 82 0 0 chr1 95689924 95690071 -101505361 - B1_Mus2 SINE Alu 0 147 1 4 1315 1267 91 23 6 chr1 95691559 95691736 -101503696 + B2_Mm2 SINE B2 1 180 -15 4 1315 194 0 39 0 chr1 95691736 95691762 -101503670 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1315 1190 36 0 7 chr1 95691762 95691902 -101503530 - B1_Mus1 SINE Alu -8 140 2 4 1315 241 289 71 10 chr1 95692503 95692522 -101502910 + PB1 SINE Alu 24 125 0 4 1315 301 221 117 0 chr1 95692522 95692599 -101502833 + ID_B1 SINE B4 137 222 -2 4 1315 242 200 163 70 chr1 95692606 95692692 -101502740 + PB1D9 SINE Alu 27 120 0 4 1315 592 197 106 0 chr1 95692694 95692826 -101502606 + B1_Mur4 SINE Alu 5 150 0 4 1315 638 182 104 71 chr1 95692888 95693071 -101502361 + B2_Mm2 SINE B2 6 194 -1 4 1315 239 389 0 0 chr1 95693157 95693229 -101502203 + ID2 SINE ID 1 72 -11 4 1315 449 299 86 14 chr1 95693255 95693394 -101502038 + RSINE1 SINE B4 3 151 -14 4 1315 21 0 0 0 chr1 95693414 95693435 -101501997 + AT_rich Low_complexity Low_complexity 1 21 0 4 1315 608 227 47 0 chr1 95693580 95693708 -101501724 + B1F SINE Alu 9 142 -7 4 1315 720 214 179 0 chr1 95693716 95693889 -101501543 + B3 SINE B2 4 207 -9 4 1315 1023 175 148 16 chr1 95693891 95694141 -101501291 - RMER1C Other Other -10 1332 1050 4 1315 937 127 35 0 chr1 95694172 95694314 -101501118 + B1_Mus1 SINE Alu 2 148 0 4 1315 595 243 21 29 chr1 95694397 95694537 -101500895 + B1_Mur1 SINE Alu 2 140 -9 4 1315 328 195 137 89 chr1 95695509 95695633 -101499799 + L1MC2 LINE L1 4951 5080 -1066 4 1315 931 150 77 16 chr1 95695746 95695929 -101499503 + B2_Mm2 SINE B2 2 195 0 4 1315 1002 127 0 20 chr1 95696039 95696192 -101499240 + B1_Mur4 SINE Alu 1 150 0 4 1315 316 296 11 0 chr1 95696206 95696294 -101499138 + PB1D7 SINE Alu 31 119 -1 4 1315 310 340 18 99 chr1 95696313 95696535 -101498897 + B4 SINE B4 1 204 -88 4 1315 421 237 0 139 chr1 95696438 95696575 -101498857 + B1_Mur3 SINE Alu 32 149 0 4 1315 202 132 0 68 chr1 95696578 95696631 -101498801 + A-rich Low_complexity Low_complexity 2 52 0 4 1315 1119 51 73 0 chr1 95696631 95696768 -101498664 + B1_Mm SINE Alu 1 147 0 4 1315 202 132 0 68 chr1 95696768 95696787 -101498645 + A-rich Low_complexity Low_complexity 53 69 0 4 1315 716 231 141 6 chr1 95696790 95696960 -101498472 + B3 SINE B2 14 206 -10 4 1315 437 182 0 38 chr1 95696979 95697059 -101498373 + B1_Mur3 SINE Alu 73 149 0 4 1315 640 322 89 12 chr1 95697797 95698045 -101497387 - B4A SINE B4 -23 269 3 4 1315 633 157 172 8 chr1 95698045 95698170 -101497262 - MTD LTR MaLR -273 146 1 4 1315 483 128 105 11 chr1 95699001 95699096 -101496336 + B1_Mur1 SINE Alu 45 148 -1 4 1315 274 250 99 33 chr1 95699158 95699249 -101496183 + ID_B1 SINE B4 34 130 -94 4 1315 1319 261 161 17 chr1 95699262 95700040 -101495392 + L1MC2 LINE L1 5329 6218 -126 4 1315 23 0 0 0 chr1 95700505 95700528 -101494904 + GC_rich Low_complexity Low_complexity 1 23 0 4 1315 31 44 0 0 chr1 95700633 95700678 -101494754 + GC_rich Low_complexity Low_complexity 1 45 0 4 1315 23 54 0 0 chr1 95700784 95700821 -101494611 + GC_rich Low_complexity Low_complexity 1 37 0 4 1315 192 152 0 0 chr1 95701484 95701517 -101493915 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1315 943 209 52 5 chr1 95702366 95702558 -101492874 - B3 SINE B2 -8 208 8 5 1315 458 280 40 9 chr1 95702836 95702957 -101492475 - B1_Mur2 SINE Alu 0 120 1 5 1315 469 171 0 22 chr1 95702963 95703053 -101492379 - PB1D10 SINE Alu -1 116 29 5 1315 343 281 139 90 chr1 95703121 95703344 -101492088 - B4A SINE B4 -56 236 3 5 1315 350 262 93 70 chr1 95703316 95703346 -101492086 - B4 SINE B4 -46 246 148 5 1315 707 124 33 0 chr1 95703346 95703467 -101491965 - B1_Mus1 SINE Alu -23 125 1 5 1315 350 262 93 70 chr1 95703467 95703488 -101491944 - B4 SINE B4 -46 147 71 5 1315 404 244 243 6 chr1 95703836 95704009 -101491423 + B3 SINE B2 1 214 -2 5 1315 300 261 0 55 chr1 95704103 95704176 -101491256 - L1MEg LINE L1 -4134 1950 1882 5 1315 1257 48 0 0 chr1 95704179 95704325 -101491107 - B1_Mus2 SINE Alu 0 147 2 5 1315 446 252 127 100 chr1 95704355 95704505 -101490927 - RSINE1 SINE B4 0 165 12 5 1315 327 96 0 0 chr1 95704685 95704737 -101490695 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 5 1315 600 173 0 9 chr1 95704738 95704843 -101490589 - B1_Mur4 SINE Alu -36 114 11 5 1315 413 261 48 40 chr1 95704843 95704861 -101490571 - B4 SINE B4 -87 204 81 5 1315 498 279 14 22 chr1 95704894 95705033 -101490399 - RSINE1 SINE B4 -2 163 26 5 1315 554 152 61 0 chr1 95705149 95705248 -101490184 - U6 snRNA snRNA -2 105 1 5 1315 653 163 93 0 chr1 95705366 95705495 -101489937 - B1_Mur3 SINE Alu -8 141 1 5 1315 405 296 47 75 chr1 95705849 95706061 -101489371 + ID_B1 SINE B4 12 217 -7 5 1315 732 194 8 0 chr1 95705932 95706066 -101489366 + B1_Mur2 SINE Alu 13 147 -2 5 1315 832 146 66 0 chr1 95706160 95706297 -101489135 - B1_Mus1 SINE Alu -1 147 2 5 1315 428 35 17 0 chr1 95706312 95706370 -101489062 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1315 486 222 65 129 chr1 95706370 95706389 -101489043 - B1_Mur3 SINE Alu -2 147 130 5 1315 1861 207 107 27 chr1 95706389 95706876 -101488556 - RLTR11A2 LTR ERVK 0 527 2 5 1315 486 222 65 129 chr1 95706876 95706921 -101488511 - B1_Mur3 SINE Alu -20 129 100 5 1315 1359 58 46 6 chr1 95706921 95707095 -101488337 + B2_Mm2 SINE B2 3 183 -12 5 1315 237 65 0 0 chr1 95707095 95707126 -101488306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1315 486 222 65 129 chr1 95707126 95707214 -101488218 - B1_Mur3 SINE Alu -50 99 4 5 1315 716 219 132 11 chr1 95707236 95707425 -101488007 - B3 SINE B2 -1 215 4 5 1315 1063 82 95 0 chr1 95707465 95707612 -101487820 + B2_Mm2 SINE B2 1 161 -34 5 1315 228 67 0 0 chr1 95707612 95707642 -101487790 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 5 1315 1420 76 16 0 chr1 95707642 95707826 -101487606 - B2_Mm2 SINE B2 -7 188 2 5 1315 317 259 12 12 chr1 95708858 95708940 -101486492 - ID4 SINE ID 0 83 2 5 1315 1071 106 7 0 chr1 95709361 95709502 -101485930 - B1_Mur4 SINE Alu -6 144 3 5 1315 302 312 42 35 chr1 95711129 95711272 -101484160 - B1_Mus1 SINE Alu 0 148 5 5 1315 1171 82 0 7 chr1 95711479 95711626 -101483806 + B1_Mus1 SINE Alu 2 147 -1 5 1315 719 263 38 25 chr1 95716490 95716650 -101478782 - ID_B1 SINE B4 -13 211 50 5 1315 882 147 0 34 chr1 95716662 95716810 -101478622 - B1_Mus1 SINE Alu 0 148 6 5 1315 275 342 27 9 chr1 95716964 95717076 -101478356 - PB1D10 SINE Alu -1 116 3 5 1315 250 266 15 30 chr1 95717492 95717558 -101477874 + tRNA-Gly-GGA tRNA tRNA 1 65 -10 5 1315 445 143 29 0 chr1 95718924 95718994 -101476438 + ID4 SINE ID 1 72 -11 5 1315 460 237 120 106 chr1 95719077 95719294 -101476138 - MLT1A LTR MaLR -2 372 153 5 1315 383 233 48 10 chr1 95719323 95719427 -101476005 + B1F2 SINE Alu 21 128 -21 5 1315 345 143 18 0 chr1 95719429 95719485 -101475947 - ID SINE ID -167 57 1 5 1315 2048 177 66 23 chr1 95719830 95720105 -101475327 - MTC LTR MaLR -10 411 119 5 1315 1213 53 142 0 chr1 95720105 95720274 -101475158 - B2_Mm2 SINE B2 -1 194 2 5 1315 2048 177 66 23 chr1 95720274 95720392 -101475040 - MTC LTR MaLR -303 118 1 5 1315 971 115 0 0 chr1 95720654 95720784 -101474648 - B1_Mur4 SINE Alu -19 131 2 5 1315 764 170 196 31 chr1 95722552 95722746 -101472686 - URR1A DNA MER1_type 0 226 1 5 1315 218 74 18 53 chr1 95723561 95723618 -101471814 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 5 1315 825 145 50 7 chr1 95723618 95723757 -101471675 - B1_Mur4 SINE Alu 0 150 6 5 1315 207 0 0 0 chr1 95723794 95723817 -101471615 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1315 377 20 20 0 chr1 95723819 95723869 -101471563 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1315 790 267 13 0 chr1 95723873 95724023 -101471409 - B3A SINE B2 -44 154 3 5 1315 1324 114 5 5 chr1 95724026 95724220 -101471212 - B2_Mm2 SINE B2 -1 194 1 5 1315 327 237 244 52 chr1 95724300 95724485 -101470947 - B3A SINE B2 0 216 2 5 1315 812 192 127 66 chr1 95726707 95726935 -101468497 - RMER12 LTR ERVK -107 1215 974 5 1315 1479 29 0 0 chr1 95726977 95727185 -101468247 + (TGGA)n Simple_repeat Simple_repeat 1 208 0 5 1315 1403 47 8 7 chr1 95727204 95727360 -101468072 + (TGGA)n Simple_repeat Simple_repeat 1 157 -316 5 1315 1403 47 8 7 chr1 95727365 95727677 -101467755 + (TGGA)n Simple_repeat Simple_repeat 158 473 0 5 1315 4704 106 27 44 chr1 95727677 95728017 -101467415 - RMER12 LTR ERVK -570 752 440 5 1315 1289 97 23 0 chr1 95728017 95728193 -101467239 - B2_Mm2 SINE B2 -14 181 2 5 1315 4704 106 27 44 chr1 95728193 95728614 -101466818 - RMER12 LTR ERVK -883 439 3 5 1315 678 257 67 6 chr1 95729648 95729828 -101465604 - MTEb LTR MaLR -13 366 176 5 1315 347 305 31 31 chr1 95729839 95729937 -101465495 - MTEb LTR MaLR -237 142 45 5 1315 268 311 0 13 chr1 95729937 95730012 -101465420 + C-rich Low_complexity Low_complexity 1 74 0 5 1315 534 57 0 0 chr1 95730018 95730088 -101465344 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1315 1313 81 5 42 chr1 95730153 95730346 -101465086 - B2_Mm2 SINE B2 -9 186 1 5 1315 1303 95 11 6 chr1 95730352 95730532 -101464900 - B2_Mm2 SINE B2 -11 184 4 5 1315 1016 103 51 0 chr1 95730532 95730688 -101464744 - B2_Mm1t SINE B2 -3 190 27 5 1315 1278 34 0 0 chr1 95730709 95730856 -101464576 - B1_Mm SINE Alu 0 147 1 5 1315 236 75 0 130 chr1 95730856 95730902 -101464530 - B2_Mm2 SINE B2 -154 41 2 5 1315 260 287 57 11 chr1 95730902 95730988 -101464444 - B4A SINE B4 -202 90 1 5 1315 285 98 0 0 chr1 95731164 95731205 -101464227 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1315 519 182 0 0 chr1 95732348 95732474 -101462958 + CT-rich Low_complexity Low_complexity 2 127 0 5 1315 588 311 125 5 chr1 95732828 95733012 -101462420 - B4 SINE B4 -2 290 85 5 1315 389 171 45 23 chr1 95733018 95733150 -101462282 + CT-rich Low_complexity Low_complexity 4 138 0 5 1315 1007 213 50 0 chr1 95733157 95733359 -101462073 - B3 SINE B2 -4 212 1 5 1315 380 247 32 0 chr1 95733359 95733452 -101461980 - B4A SINE B4 -196 96 1 5 1315 197 98 24 0 chr1 95733718 95733759 -101461673 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1315 207 88 0 0 chr1 95733806 95733840 -101461592 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1315 1274 21 0 0 chr1 95733842 95733983 -101461449 - B1_Mus2 SINE Alu -6 141 1 5 1315 29 78 0 0 chr1 95735662 95735726 -101459706 + AT_rich Low_complexity Low_complexity 1 64 0 5 1315 36936 44 1 3 chr1 95735726 95742201 -101453231 - L1Md_T LINE L1 0 6585 30 5 1315 1298 81 40 0 chr1 95742201 95742375 -101453057 - B2_Mm2 SINE B2 -14 181 1 5 1315 429 180 0 0 chr1 95742939 95743028 -101452404 + T-rich Low_complexity Low_complexity 1 89 0 5 1315 819 145 46 0 chr1 95743028 95743159 -101452273 - B1_Mus2 SINE Alu 0 147 11 5 1315 550 320 82 0 chr1 95743187 95743381 -101452051 - ID_B1 SINE B4 -3 221 12 5 1315 402 147 0 0 chr1 95743977 95744045 -101451387 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1315 839 175 7 0 chr1 95744092 95744235 -101451197 - B1_Mur4 SINE Alu -2 148 5 5 1315 746 22 0 11 chr1 95744255 95744348 -101451084 + (TTTTC)n Simple_repeat Simple_repeat 3 94 0 5 1315 1009 84 0 0 chr1 95744348 95744479 -101450953 - B1_Mm SINE Alu -12 135 5 5 1315 1906 221 141 99 chr1 95744908 95745185 -101450247 - RLTR40 LTR ERVK -9 808 476 5 1315 4550 147 32 31 chr1 95745185 95745993 -101449439 - RMER17D2 LTR ERVK 0 809 1 5 1315 1906 221 141 99 chr1 95745993 95746166 -101449266 - RLTR40 LTR ERVK -342 475 351 5 1315 1027 116 0 0 chr1 95746166 95746312 -101449120 - B1_Mm SINE Alu 0 147 2 5 1315 1906 221 141 99 chr1 95746312 95746621 -101448811 - RLTR40 LTR ERVK -467 350 16 5 1315 736 197 15 22 chr1 95746676 95746811 -101448621 - B1_Mur1 SINE Alu -11 138 5 5 1315 227 298 23 116 chr1 95746823 95746952 -101448480 + MER68 LTR ERVL 39 155 -408 5 1315 469 331 64 40 chr1 95747969 95748218 -101447214 - RLTR16 LTR ERVK -227 278 24 5 1315 728 201 0 86 chr1 95748457 95748620 -101446812 - B1_Mur2 SINE Alu 0 149 1 5 1315 567 180 17 51 chr1 95749583 95749700 -101445732 + PB1D9 SINE Alu 1 113 -7 5 1315 367 59 0 0 chr1 95750598 95750649 -101444783 - B1_Mus1 SINE Alu -79 69 18 5 1315 214 140 23 23 chr1 95751318 95751345 -101444087 + polypyrimidine Low_complexity Low_complexity 18 45 0 5 1315 210 37 0 0 chr1 95751345 95751372 -101444060 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1315 214 140 23 23 chr1 95751372 95751388 -101444044 + polypyrimidine Low_complexity Low_complexity 2 17 0 5 1315 1149 65 0 0 chr1 95751401 95751540 -101443892 - B1_Mm SINE Alu -8 139 1 5 1315 5386 61 7 16 chr1 95751552 95752252 -101443180 - L1_Mus2 LINE L1 0 6566 5873 5 1315 268 211 0 37 chr1 95752411 95752465 -101442967 - B2_Mm2 SINE B2 -100 95 44 5 1315 283 323 38 38 chr1 95753305 95753369 -101442063 + B4 SINE B4 24 134 -158 5 1315 317 138 0 0 chr1 95753369 95753427 -101442005 + B1_Mus1 SINE Alu 4 61 -87 5 1315 204 127 0 87 chr1 95753459 95753482 -101441950 + A-rich Low_complexity Low_complexity 2 22 0 5 1315 3818 11 121 0 chr1 95753482 95753922 -101441510 + MT2_Mm LTR ERVL 1 493 0 5 1315 204 127 0 87 chr1 95753922 95753967 -101441465 + A-rich Low_complexity Low_complexity 23 63 0 6 1315 237 211 0 0 chr1 95754210 95754248 -101441184 + RLTR13D3 LTR ERVK 1 38 -1076 6 1315 1840 189 5 123 chr1 95755298 95755352 -101440080 - ORR1C1 LTR MaLR 0 378 336 6 1315 1284 94 50 0 chr1 95755352 95755533 -101439899 - B2_Mm1t SINE B2 -3 190 1 6 1315 1840 189 5 123 chr1 95755533 95755621 -101439811 - ORR1C1 LTR MaLR -43 335 261 6 1315 1273 41 0 0 chr1 95755621 95755768 -101439664 + B1_Mus2 SINE Alu 1 147 0 6 1315 1840 189 5 123 chr1 95755768 95756053 -101439379 - ORR1C1 LTR MaLR -118 260 1 6 1315 1470 154 60 125 chr1 95756268 95756428 -101439004 + ORR1D1 LTR MaLR 1 158 -216 6 1315 204 97 0 0 chr1 95756428 95756459 -101438973 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 6 1315 1470 154 60 125 chr1 95756459 95756542 -101438890 + ORR1D1 LTR MaLR 159 224 -150 6 1315 198 0 0 0 chr1 95756542 95756564 -101438868 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 6 1315 1470 154 60 125 chr1 95756564 95756644 -101438788 + ORR1D1 LTR MaLR 225 305 -69 6 1315 582 15 0 0 chr1 95756644 95756711 -101438721 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1315 829 151 7 40 chr1 95756712 95756864 -101438568 - B1_Mur3 SINE Alu -2 147 1 6 1315 1470 154 60 125 chr1 95756864 95756936 -101438496 + ORR1D1 LTR MaLR 306 374 0 6 1315 457 208 0 161 chr1 95757299 95757442 -101437990 - B1_Mur1 SINE Alu -9 140 21 6 1315 246 237 23 116 chr1 95758377 95758463 -101436969 - ID2 SINE ID -4 79 2 6 1315 2417 174 112 32 chr1 95759236 95759765 -101435667 - RMER15 LTR ERVL -4 571 1 6 1315 412 255 11 11 chr1 95759765 95759860 -101435572 + PB1D9 SINE Alu 19 113 -7 6 1315 560 284 7 7 chr1 95759896 95760031 -101435401 + B1_Mur1 SINE Alu 2 136 -13 6 1315 1696 196 31 92 chr1 95760005 95760460 -101434972 - RMER4A LTR ERVK -11 455 29 6 1315 1200 131 16 0 chr1 95760442 95760625 -101434807 - B2_Mm2 SINE B2 0 195 10 6 1315 300 27 0 0 chr1 95760685 95760722 -101434710 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1315 777 51 0 0 chr1 95760723 95760821 -101434611 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 6 1315 1576 37 21 5 chr1 95760825 95761015 -101434417 + B2_Mm1a SINE B2 1 193 0 6 1315 213 39 0 0 chr1 95761015 95761041 -101434391 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1315 443 353 7 0 chr1 95762672 95762825 -101432607 - MER67C LTR ERV1 -195 516 363 6 1315 747 301 0 6 chr1 95762825 95762989 -101432443 + RSINE1 SINE B4 3 165 0 6 1315 186 43 0 0 chr1 95763009 95763032 -101432400 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1315 183 42 0 0 chr1 95763267 95763291 -101432141 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 1315 677 171 124 0 chr1 95763294 95763423 -101432009 - B1_Mur4 SINE Alu -5 145 1 6 1315 297 0 0 0 chr1 95763435 95763468 -101431964 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1315 1200 68 0 0 chr1 95763479 95763626 -101431806 - B1_Mus2 SINE Alu 0 147 1 6 1315 253 238 92 73 chr1 95763629 95763738 -101431694 - MER67C LTR ERV1 -598 113 3 6 1315 1829 151 9 51 chr1 95764609 95764944 -101430488 - ORR1A3 LTR MaLR 0 326 6 6 1315 393 312 13 6 chr1 95765123 95765301 -101430131 + L1MC5 LINE L1 6671 6849 -1146 6 1315 1091 121 21 42 chr1 95766867 95767057 -101428375 - B2_Mm2 SINE B2 -7 188 3 6 1315 1839 179 113 26 chr1 95767380 95767413 -101428019 + RMER4A LTR ERVK 1 33 -433 6 1315 204 40 0 0 chr1 95767413 95767438 -101427994 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1315 1839 179 113 26 chr1 95767438 95767829 -101427603 + RMER4A LTR ERVK 34 462 -4 6 1315 570 143 190 29 chr1 95767828 95767879 -101427553 + RMER4A LTR ERVK 308 380 -86 6 1315 762 89 0 0 chr1 95767879 95767991 -101427441 + (TCCC)n Simple_repeat Simple_repeat 2 113 0 6 1315 570 143 190 29 chr1 95767991 95768076 -101427356 + RMER4A LTR ERVK 381 465 -1 6 1315 462 120 0 0 chr1 95768459 95768534 -101426898 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1315 717 175 21 28 chr1 95772669 95772810 -101422622 + B1_Mur2 SINE Alu 10 149 0 6 1315 2194 115 75 0 chr1 95772822 95773171 -101422261 + RLTR9A2 LTR ERVK 9 383 0 6 1315 5480 68 30 77 chr1 95773318 95774137 -101421295 + L1Md_F2 LINE L1 5799 6579 -3 6 1315 203 175 0 0 chr1 95774233 95774273 -101421159 + A-rich Low_complexity Low_complexity 4 43 0 6 1315 312 48 0 0 chr1 95774300 95774342 -101421090 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1315 1153 182 86 94 chr1 95774342 95774681 -101420751 + RLTR45-int LTR ERVK 2077 2412 -4832 6 1315 2655 124 22 7 chr1 95774866 95775313 -101420119 + ETnERV2-int LTR ERVK 1377 1830 -5576 6 1315 28 0 0 0 chr1 95775313 95775341 -101420091 + AT_rich Low_complexity Low_complexity 1 28 0 6 1315 6119 60 0 3 chr1 95775370 95776124 -101419308 - L1_Mus1 LINE L1 0 6567 5816 6 1315 2412 104 44 81 chr1 95776124 95776532 -101418900 + RLTR9C LTR ERVK 1 393 0 6 1315 4878 184 96 86 chr1 95776533 95780776 -101414656 + ETnERV2-int LTR ERVK 2 6425 -981 6 1315 421 129 0 0 chr1 95780987 95781057 -101414375 + ETnERV2-int LTR ERVK 7331 7400 -6 6 1315 2009 126 90 85 chr1 95781057 95781447 -101413985 + RLTR9C LTR ERVK 2 393 0 6 1315 1391 68 6 0 chr1 95781447 95781624 -101413808 - L1_Mus1 LINE L1 -746 5821 5644 6 1315 1673 102 4 33 chr1 95781624 95781899 -101413533 + RLTR45-int LTR ERVK 2830 3096 -4148 6 1315 11316 175 61 51 chr1 95781894 95782674 -101412758 + RMER16-int LTR ERVK 1566 2096 -3310 6 1315 1418 50 78 0 chr1 95782674 95782692 -101412740 - B2_Mm1a SINE B2 0 193 176 6 1315 186 43 0 0 chr1 95782692 95782715 -101412717 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1315 1418 50 78 0 chr1 95782715 95782875 -101412557 - B2_Mm1a SINE B2 -18 175 2 6 1315 11316 174 73 47 chr1 95782875 95783631 -101411801 + RMER16-int LTR ERVK 2097 2855 -2551 6 1315 195 42 0 0 chr1 95783631 95783655 -101411777 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1315 11316 174 73 47 chr1 95783655 95784930 -101410502 + RMER16-int LTR ERVK 2856 4176 -1230 6 1315 441 312 65 68 chr1 95784942 95785265 -101410167 + ETnERV2-int LTR ERVK 6101 6422 -984 6 1315 340 113 40 53 chr1 95785481 95785556 -101409876 + ETnERV2-int LTR ERVK 7331 7404 -2 6 1315 2102 145 70 3 chr1 95785557 95785916 -101409516 + RLTR9A2 LTR ERVK 1 383 0 6 1315 438 231 9 44 chr1 95786013 95786126 -101409306 - RLTR28 LTR ERVL -1 523 415 6 1315 1158 139 10 5 chr1 95786155 95786358 -101409074 - LTRIS2 LTR ERV1 0 564 361 6 1315 1690 21 0 20 chr1 95786495 95786692 -101408740 - B2_Mm1a SINE B2 0 193 1 6 1315 499 268 75 21 chr1 95786836 95787023 -101408409 + Lx6 LINE L1 7264 7460 0 6 1315 27 0 0 0 chr1 95787051 95787078 -101408354 + AT_rich Low_complexity Low_complexity 1 27 0 6 1315 245 284 12 0 chr1 95787408 95787489 -101407943 + GA-rich Low_complexity Low_complexity 3 84 0 6 1315 294 29 0 0 chr1 95787569 95787604 -101407828 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1315 22 0 0 0 chr1 95787777 95787799 -101407633 + AT_rich Low_complexity Low_complexity 1 22 0 6 1315 757 250 53 10 chr1 95787820 95788026 -101407406 + B3 SINE B2 1 215 -1 6 1315 400 213 115 23 chr1 95788116 95788246 -101407186 - B1_Mus1 SINE Alu -6 142 1 6 1315 1079 105 99 0 chr1 95788356 95788518 -101406914 - B2_Mm2 SINE B2 -17 178 1 6 1315 746 197 7 14 chr1 95788529 95788668 -101406764 - B1_Mur3 SINE Alu -8 141 4 6 1315 4308 53 2 8 chr1 95789229 95789744 -101405688 - LTRIS3 LTR ERV1 0 512 1 6 1315 919 216 5 5 chr1 95789792 95789978 -101405454 - RLTR1B-int LTR ERV1 -81 3218 3033 6 1315 915 10 0 0 chr1 95789980 95790084 -101405348 + (TTC)n Simple_repeat Simple_repeat 2 105 0 6 1315 918 95 0 55 chr1 95790084 95790229 -101405203 - B1_Mus1 SINE Alu -9 139 3 6 1315 2418 167 41 9 chr1 95790233 95790673 -101404759 - MMVL30-int LTR ERV1 -257 3441 2988 6 1315 9975 21 0 0 chr1 95790675 95792494 -101402938 - L1Md_T LINE L1 0 6582 4764 6 1315 1475 52 0 49 chr1 95792504 95792550 -101402882 - B2_Mm1a SINE B2 0 193 157 6 1315 450 0 0 0 chr1 95792550 95792600 -101402832 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 1315 1475 52 0 49 chr1 95792600 95792756 -101402676 - B2_Mm1a SINE B2 -37 156 1 6 1315 650 272 67 59 chr1 95792765 95793169 -101402263 - MMVL30-int LTR ERV1 -707 2991 2875 6 1315 4478 18 0 0 chr1 95793169 95793662 -101401770 + MT2_Mm LTR ERVL 1 493 0 6 1315 569 307 50 50 chr1 95793662 95794109 -101401323 - MMVL30-int LTR ERV1 -3218 4560 3973 6 1315 2179 158 124 35 chr1 95794209 95794703 -101400729 - MMVL30-int LTR ERV1 -1471 2227 1779 6 1315 472 171 50 119 chr1 95794703 95794862 -101400570 - MMVL30-int LTR ERV1 -2035 1663 1516 6 1315 202 146 0 24 chr1 95794909 95794951 -101400481 + T-rich Low_complexity Low_complexity 1 41 0 6 1315 2182 82 27 6 chr1 95795500 95795833 -101399599 + IAPLTR4 LTR ERVK 1 340 -5 6 1315 456 210 140 1 chr1 95796169 95796311 -101399121 - L1MD LINE L1 -716 5408 5241 6 1315 492 209 70 0 chr1 95796330 95796445 -101398987 + ID_B1 SINE B4 93 215 -9 6 1315 3362 60 92 0 chr1 95796574 95797009 -101398423 + MT2C_Mm LTR ERVL 1 475 0 6 1315 252 211 0 17 chr1 95798341 95798399 -101397033 - MMVL30-int LTR ERV1 -2245 1054 998 6 1315 3079 131 115 29 chr1 95798512 95799069 -101396363 + RLTR1D LTR ERV1 1 605 0 6 1315 626 244 17 28 chr1 95800577 95800610 -101394822 - B3A SINE B2 0 198 167 6 1315 381 58 0 0 chr1 95800610 95800662 -101394770 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1315 626 244 17 28 chr1 95800662 95800809 -101394623 - B3A SINE B2 -32 166 20 6 1315 3168 60 5 2 chr1 95800856 95801255 -101394177 + MTB LTR MaLR 1 400 0 6 1315 1270 209 45 14 chr1 95801550 95801837 -101393595 + Lx4B LINE L1 6749 7044 -14 6 1315 222 37 0 0 chr1 95803534 95803561 -101391871 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1315 544 229 136 50 chr1 95803789 95803987 -101391445 - RMER12 LTR ERVK -107 1215 1001 6 1315 372 43 0 0 chr1 95804020 95804066 -101391366 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1315 435 90 39 0 chr1 95804096 95804174 -101391258 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 6 1315 4378 116 27 17 chr1 95804175 95804507 -101390925 - RMER12 LTR ERVK -563 759 430 6 1315 1205 123 27 5 chr1 95804507 95804695 -101390737 - B2_Mm2 SINE B2 -3 192 1 6 1315 4378 116 27 17 chr1 95804695 95805114 -101390318 - RMER12 LTR ERVK -893 429 1 6 1315 534 277 217 0 chr1 95806148 95806401 -101389031 - MTEb LTR MaLR -13 366 59 6 1315 21 0 0 0 chr1 95806463 95806484 -101388948 + AT_rich Low_complexity Low_complexity 1 21 0 6 1315 792 0 0 0 chr1 95806687 95806775 -101388657 + (TTCTC)n Simple_repeat Simple_repeat 1 88 0 6 1315 1202 95 6 0 chr1 95806775 95806954 -101388478 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 1315 213 154 0 0 chr1 95806957 95806996 -101388436 + CT-rich Low_complexity Low_complexity 4 42 0 6 1315 219 69 0 0 chr1 95807030 95807059 -101388373 + (TCC)n Simple_repeat Simple_repeat 3 31 0 6 1315 26 30 0 0 chr1 95808058 95808091 -101387341 + AT_rich Low_complexity Low_complexity 1 33 0 6 1315 1346 82 39 0 chr1 95808096 95808278 -101387154 - B2_Mm2 SINE B2 -6 189 1 6 1315 384 191 0 0 chr1 95808842 95808926 -101386506 + T-rich Low_complexity Low_complexity 1 84 0 6 1315 762 145 46 0 chr1 95808926 95809057 -101386375 - B1_Mus2 SINE Alu 0 147 11 7 1315 486 314 84 0 chr1 95809085 95809276 -101386156 - ID_B1 SINE B4 -3 221 15 7 1315 438 139 0 0 chr1 95809875 95809947 -101385485 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1315 797 168 7 0 chr1 95809994 95810137 -101385295 - B1_Mur4 SINE Alu -2 148 5 7 1315 1127 8 0 8 chr1 95810157 95810290 -101385142 + (TTTTC)n Simple_repeat Simple_repeat 3 134 0 7 1315 985 91 0 0 chr1 95810290 95810422 -101385010 - B1_Mm SINE Alu -12 135 4 7 1315 1578 211 154 115 chr1 95810853 95811130 -101384302 - RLTR40 LTR ERVK -9 808 476 7 1315 4403 148 32 29 chr1 95811130 95811936 -101383496 - RMER17D2 LTR ERVK 0 809 1 7 1315 1578 211 154 115 chr1 95811936 95812110 -101383322 - RLTR40 LTR ERVK -342 475 351 7 1315 1065 103 0 0 chr1 95812110 95812256 -101383176 - B1_Mm SINE Alu 0 147 2 7 1315 1578 211 154 115 chr1 95812256 95812562 -101382870 - RLTR40 LTR ERVK -467 350 20 7 1315 685 197 15 22 chr1 95812621 95812756 -101382676 - B1_Mur1 SINE Alu -11 138 5 7 1315 374 316 42 8 chr1 95812651 95812769 -101382663 - B4 SINE B4 -94 198 77 7 1316 462 319 67 29 chr1 95813924 95814163 -101381269 - RLTR16 LTR ERVK -234 271 24 7 1316 635 221 0 86 chr1 95814402 95814565 -101380867 - B1_Mur2 SINE Alu 0 149 1 7 1316 588 179 8 51 chr1 95815529 95815647 -101379785 + PB1D9 SINE Alu 1 113 -7 7 1316 198 103 0 0 chr1 95816600 95816629 -101378803 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1316 402 73 0 0 chr1 95816707 95816762 -101378670 - B2_Mm2 SINE B2 -94 101 47 7 1316 1182 106 50 0 chr1 95816787 95816966 -101378466 - B2_Mm1t SINE B2 -5 188 1 7 1316 186 43 0 0 chr1 95817287 95817310 -101378122 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1316 938 24 0 0 chr1 95817310 95817433 -101377999 - B1_Mus2 SINE Alu 0 147 25 7 1316 192 208 0 0 chr1 95818109 95818140 -101377292 + polypyrimidine Low_complexity Low_complexity 19 49 0 7 1316 423 0 0 0 chr1 95818140 95818187 -101377245 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 7 1316 192 208 0 0 chr1 95818187 95818203 -101377229 + polypyrimidine Low_complexity Low_complexity 3 18 0 7 1316 1125 65 0 0 chr1 95818217 95818356 -101377076 - B1_Mm SINE Alu -8 139 1 7 1316 5313 62 7 13 chr1 95818364 95819062 -101376370 - L1_Mus2 LINE L1 0 6566 5873 7 1316 261 240 0 0 chr1 95819225 95819275 -101376157 - B2_Mm2 SINE B2 -102 93 44 7 1316 885 140 7 20 chr1 95820193 95820339 -101375093 + B1_Mus1 SINE Alu 5 148 0 7 1316 270 94 31 15 chr1 95820339 95820404 -101375028 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 7 1316 207 0 0 0 chr1 95820399 95820422 -101375010 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1316 279 203 68 44 chr1 95821475 95821599 -101373833 + RLTR13D3 LTR ERVK 981 1052 -62 7 1316 1721 187 5 142 chr1 95821763 95821812 -101373620 - ORR1C1 LTR MaLR -2 376 336 7 1316 1201 113 43 5 chr1 95821812 95821998 -101373434 - B2_Mm1t SINE B2 0 193 1 7 1316 1721 187 5 142 chr1 95821998 95822086 -101373346 - ORR1C1 LTR MaLR -43 335 261 7 1316 1248 41 0 0 chr1 95822086 95822233 -101373199 + B1_Mus2 SINE Alu 1 147 0 7 1316 1721 187 5 142 chr1 95822233 95822530 -101372902 - ORR1C1 LTR MaLR -118 260 1 7 1316 1566 153 34 139 chr1 95822746 95823085 -101372347 + ORR1D1 LTR MaLR 1 304 -70 7 1316 357 116 0 0 chr1 95823085 95823154 -101372278 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 7 1316 731 169 34 40 chr1 95823159 95823307 -101372125 - B1_Mur3 SINE Alu -2 147 1 7 1316 1566 153 34 139 chr1 95823307 95823379 -101372053 + ORR1D1 LTR MaLR 305 374 0 7 1316 426 200 0 161 chr1 95823742 95823885 -101371547 - B1_Mur1 SINE Alu -9 140 21 7 1316 231 237 23 116 chr1 95824820 95824906 -101370526 - ID2 SINE ID -4 79 2 7 1316 393 252 8 90 chr1 95825648 95825674 -101369758 + PB1D9 SINE Alu 2 18 -102 7 1316 2336 171 111 32 chr1 95825674 95826207 -101369225 - RMER15 LTR ERVL 0 575 1 7 1316 393 252 8 90 chr1 95826207 95826302 -101369130 + PB1D9 SINE Alu 19 113 -7 7 1316 523 229 0 0 chr1 95826338 95826434 -101368998 + B1_Mur2 SINE Alu 2 97 -52 7 1316 1505 191 31 92 chr1 95826447 95826902 -101368530 - RMER4A LTR ERVK -11 455 29 7 1316 1114 119 17 0 chr1 95826891 95827067 -101368365 - B2_Mm2 SINE B2 -7 188 10 7 1316 233 139 93 0 chr1 95827083 95827126 -101368306 + B1_Mur3 SINE Alu 93 139 -10 7 1316 264 30 0 0 chr1 95827127 95827160 -101368272 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1316 444 37 0 0 chr1 95827161 95827215 -101368217 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 7 1316 378 346 7 0 chr1 95828839 95828992 -101366440 - MER67C LTR ERV1 -195 516 363 7 1316 701 301 0 6 chr1 95828992 95829156 -101366276 + RSINE1 SINE B4 3 165 0 7 1316 186 43 0 0 chr1 95829176 95829199 -101366233 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1316 673 163 124 0 chr1 95829462 95829591 -101365841 - B1_Mur4 SINE Alu -5 145 1 7 1316 266 0 29 0 chr1 95829602 95829636 -101365796 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1316 1167 75 0 0 chr1 95829647 95829794 -101365638 - B1_Mus2 SINE Alu 0 147 1 7 1316 1671 154 9 51 chr1 95830777 95831112 -101364320 - ORR1A3 LTR MaLR 0 326 6 7 1316 408 311 13 5 chr1 95831291 95831463 -101363969 + L1MC5 LINE L1 6680 6878 -1164 7 1316 1085 121 21 42 chr1 95833035 95833225 -101362207 - B2_Mm2 SINE B2 -7 188 3 7 1316 1843 179 113 26 chr1 95833548 95833581 -101361851 + RMER4A LTR ERVK 1 33 -433 7 1316 204 40 0 0 chr1 95833581 95833606 -101361826 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1316 1843 179 113 26 chr1 95833606 95833997 -101361435 + RMER4A LTR ERVK 34 462 -4 7 1316 607 128 190 29 chr1 95833996 95834047 -101361385 + RMER4A LTR ERVK 308 380 -86 7 1316 780 74 0 0 chr1 95834047 95834155 -101361277 + (TCCC)n Simple_repeat Simple_repeat 2 109 0 7 1316 607 128 190 29 chr1 95834155 95834240 -101361192 + RMER4A LTR ERVK 381 465 -1 7 1316 336 148 0 0 chr1 95834623 95834684 -101360748 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1316 243 344 71 66 chr1 95834756 95834968 -101360464 - MLT1A LTR MaLR -123 251 39 7 1316 718 168 21 28 chr1 95838819 95838960 -101356472 + B1_Mur2 SINE Alu 10 149 0 7 1316 2173 115 75 0 chr1 95838972 95839321 -101356111 + RLTR9A2 LTR ERVK 9 383 0 7 1316 5550 72 25 52 chr1 95839468 95840263 -101355169 + L1Md_F2 LINE L1 5799 6572 -10 7 1316 203 175 0 0 chr1 95840361 95840401 -101355031 + A-rich Low_complexity Low_complexity 4 43 0 7 1316 240 59 0 0 chr1 95840428 95840462 -101354970 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1316 1234 183 86 95 chr1 95840462 95840800 -101354632 + RLTR45-int LTR ERVK 2077 2411 -4833 7 1316 2762 126 22 7 chr1 95842186 95842633 -101352799 + ETnERV2-int LTR ERVK 1377 1830 -5576 7 1316 24 0 0 0 chr1 95842633 95842657 -101352775 + AT_rich Low_complexity Low_complexity 1 24 0 7 1316 6039 60 1 3 chr1 95842689 95843439 -101351993 - L1_Mus1 LINE L1 -3 6564 5816 7 1316 2386 104 44 81 chr1 95843439 95843847 -101351585 + RLTR9C LTR ERVK 1 393 0 7 1316 4835 181 94 92 chr1 95843848 95848091 -101347341 + ETnERV2-int LTR ERVK 2 6425 -981 7 1316 442 114 0 0 chr1 95848302 95848372 -101347060 + ETnERV2-int LTR ERVK 7331 7400 -6 7 1316 2018 126 90 85 chr1 95848372 95848762 -101346670 + RLTR9C LTR ERVK 2 393 0 7 1316 1384 68 6 0 chr1 95848762 95848939 -101346493 - L1_Mus1 LINE L1 -746 5821 5644 7 1316 11566 183 67 83 chr1 95848939 95849571 -101345861 + RMER16-int LTR ERVK 1184 1680 -3726 7 1316 255 31 0 0 chr1 95849571 95849603 -101345829 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1316 11566 183 67 83 chr1 95849603 95850732 -101344700 + RMER16-int LTR ERVK 1681 2854 -2552 7 1316 249 33 0 0 chr1 95850732 95850762 -101344670 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 1316 11566 183 67 83 chr1 95850762 95852039 -101343393 + RMER16-int LTR ERVK 2855 4175 -1231 7 1316 456 287 81 84 chr1 95852051 95852374 -101343058 + ETnERV2-int LTR ERVK 6101 6422 -984 7 1316 336 113 40 53 chr1 95852590 95852665 -101342767 + ETnERV2-int LTR ERVK 7331 7404 -2 7 1316 2180 134 70 3 chr1 95852666 95853025 -101342407 + RLTR9A2 LTR ERVK 1 383 0 7 1316 2955 33 0 0 chr1 95853159 95853496 -101341936 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1316 24011 35 38 14 chr1 95853496 95856380 -101339052 + IAPEz-int LTR ERVK 8 2961 -3520 7 1316 10212 26 2 5 chr1 95856374 95857535 -101337897 + IAPEz-int LTR ERVK 5325 6481 0 7 1316 2955 33 0 0 chr1 95857535 95857872 -101337560 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1316 418 179 12 23 chr1 95857881 95857967 -101337465 - RLTR28 LTR ERVL -32 492 408 7 1316 1333 134 22 19 chr1 95857987 95858230 -101337202 - LTRIS2 LTR ERV1 0 564 207 7 1316 1629 47 0 0 chr1 95858325 95858518 -101336914 - B2_Mm1a SINE B2 0 193 1 7 1316 506 268 75 21 chr1 95858662 95858849 -101336583 + Lx6 LINE L1 7264 7460 0 7 1316 29 47 0 0 chr1 95858878 95858921 -101336511 + AT_rich Low_complexity Low_complexity 1 43 0 7 1316 233 301 0 0 chr1 95859240 95859313 -101336119 + GA-rich Low_complexity Low_complexity 3 75 0 7 1316 800 235 53 10 chr1 95859630 95859836 -101335596 + B3 SINE B2 1 215 -1 7 1316 386 205 114 30 chr1 95859926 95860057 -101335375 - B1_Mus1 SINE Alu -6 142 1 7 1316 1071 105 99 0 chr1 95860167 95860329 -101335103 - B2_Mm2 SINE B2 -17 178 1 7 1316 778 182 7 14 chr1 95860340 95860479 -101334953 - B1_Mur3 SINE Alu -8 141 4 7 1316 988 207 5 5 chr1 95861088 95861277 -101334155 - RLTR1B-int LTR ERV1 -85 3214 3026 7 1316 1135 82 0 0 chr1 95861286 95861432 -101334000 - B1_Mus1 SINE Alu 0 148 3 7 1316 3031 211 48 36 chr1 95861436 95862278 -101333154 - MMVL30-int LTR ERV1 -257 3441 2877 7 1316 4346 25 6 0 chr1 95862278 95862768 -101332664 + MT2_Mm LTR ERVL 1 493 0 7 1316 1493 306 79 68 chr1 95862768 95863215 -101332217 - MMVL30-int LTR ERV1 -3132 4646 4199 7 1316 2181 162 122 34 chr1 95863315 95863816 -101331616 - MMVL30-int LTR ERV1 -1471 2227 1779 7 1316 464 171 50 125 chr1 95863809 95863969 -101331463 - MMVL30-int LTR ERV1 -2035 1663 1516 7 1316 202 146 0 24 chr1 95864016 95864058 -101331374 + T-rich Low_complexity Low_complexity 1 41 0 7 1316 2326 82 27 6 chr1 95864610 95864943 -101330489 + IAPLTR4 LTR ERVK 1 340 -5 7 1316 426 219 140 1 chr1 95865279 95865421 -101330011 - L1MD LINE L1 -716 5408 5241 7 1316 527 228 65 0 chr1 95865440 95865563 -101329869 + ID_B1 SINE B4 93 223 -1 7 1316 3358 60 92 0 chr1 95865684 95866119 -101329313 + MT2C_Mm LTR ERVL 1 475 0 7 1316 254 211 0 17 chr1 95867451 95867509 -101327923 - MMVL30-int LTR ERV1 -2245 1054 998 7 1316 3090 131 115 29 chr1 95867622 95868179 -101327253 + RLTR1D LTR ERV1 1 605 0 7 1316 686 244 17 28 chr1 95869687 95869720 -101325712 - B3A SINE B2 0 198 167 7 1316 399 56 0 0 chr1 95869720 95869774 -101325658 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1316 686 244 17 28 chr1 95869774 95869921 -101325511 - B3A SINE B2 -32 166 20 7 1316 3180 60 5 2 chr1 95869968 95870367 -101325065 + MTB LTR MaLR 1 400 0 7 1316 1353 205 45 11 chr1 95870662 95870948 -101324484 + Lx4B LINE L1 6749 7044 -14 8 1316 222 37 0 0 chr1 95872643 95872670 -101322762 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1316 625 229 136 50 chr1 95872898 95873096 -101322336 - RMER12 LTR ERVK -107 1215 1001 8 1316 336 48 0 0 chr1 95873129 95873171 -101322261 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1316 363 100 43 0 chr1 95873201 95873271 -101322161 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 8 1316 4748 118 27 17 chr1 95873272 95873604 -101321828 - RMER12 LTR ERVK -563 759 430 8 1316 1173 128 27 5 chr1 95873604 95873792 -101321640 - B2_Mm2 SINE B2 -3 192 1 8 1316 4748 118 27 17 chr1 95873792 95874211 -101321221 - RMER12 LTR ERVK -893 429 1 8 1316 632 277 217 0 chr1 95875245 95875498 -101319934 - MTEb LTR MaLR -13 366 59 8 1316 21 0 0 0 chr1 95875560 95875581 -101319851 + AT_rich Low_complexity Low_complexity 1 21 0 8 1316 241 318 112 60 chr1 95875651 95875785 -101319647 - B1_Mm SINE Alu -5 142 2 8 1316 1284 89 0 0 chr1 95875785 95875965 -101319467 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1316 558 124 0 0 chr1 95875965 95876054 -101319378 + (TCCCC)n Simple_repeat Simple_repeat 4 92 0 8 1316 246 62 0 0 chr1 95876088 95876120 -101319312 + (TCC)n Simple_repeat Simple_repeat 3 34 0 8 1316 25 31 0 0 chr1 95877115 95877147 -101318285 + AT_rich Low_complexity Low_complexity 1 32 0 8 1316 1329 88 39 0 chr1 95877152 95877334 -101318098 - B2_Mm2 SINE B2 -6 189 1 8 1316 305 319 77 48 chr1 95877800 95877968 -101317464 - L1M5 LINE L1 -2901 3245 3073 8 1316 198 0 0 0 chr1 95877968 95877990 -101317442 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 8 1316 818 145 46 0 chr1 95877991 95878122 -101317310 - B1_Mus2 SINE Alu 0 147 11 8 1316 539 319 84 0 chr1 95878150 95878341 -101317091 - ID_B1 SINE B4 -3 221 15 8 1316 306 0 0 0 chr1 95878958 95878992 -101316440 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1316 838 182 7 0 chr1 95879039 95879182 -101316250 - B1_Mur4 SINE Alu -2 148 5 8 1316 701 23 0 11 chr1 95879202 95879290 -101316142 + (TTTTC)n Simple_repeat Simple_repeat 3 89 0 8 1316 996 84 0 0 chr1 95879290 95879421 -101316011 - B1_Mm SINE Alu -12 135 5 8 1316 1869 218 136 124 chr1 95879847 95880128 -101315304 - RLTR40 LTR ERVK -5 812 476 8 1316 4624 142 7 38 chr1 95880128 95880963 -101314469 - RMER17D2 LTR ERVK 0 809 1 8 1316 1869 218 136 124 chr1 95880963 95881159 -101314273 - RLTR40 LTR ERVK -342 475 351 8 1316 1138 82 0 0 chr1 95881159 95881305 -101314127 - B1_Mm SINE Alu 0 147 2 8 1316 1869 218 136 124 chr1 95881305 95881614 -101313818 - RLTR40 LTR ERVK -467 350 16 8 1316 704 197 15 22 chr1 95881669 95881804 -101313628 - B1_Mur1 SINE Alu -11 138 5 8 1316 252 281 23 116 chr1 95881816 95881945 -101313487 + MER68 LTR ERVL 39 155 -408 8 1316 554 329 46 17 chr1 95882968 95883209 -101312223 - RLTR16 LTR ERVK -234 271 24 8 1316 665 188 0 108 chr1 95883447 95883614 -101311818 - B1_Mur2 SINE Alu 0 149 1 8 1316 532 189 17 51 chr1 95884576 95884693 -101310739 + PB1D9 SINE Alu 1 113 -7 8 1316 312 27 0 0 chr1 95885393 95885430 -101310002 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1316 351 130 31 9 chr1 95885711 95885812 -101309620 - B2_Mm2 SINE B2 -6 189 47 8 1316 1196 109 17 0 chr1 95885830 95886004 -101309428 - B2_Mm1t SINE B2 -16 177 1 8 1316 2769 39 9 169 chr1 95886678 95887140 -101308292 - RLTR10 LTR ERVK -2 388 1 8 1316 261 231 0 37 chr1 95887607 95887661 -101307771 - B2_Mm2 SINE B2 -100 95 44 8 1316 841 169 7 0 chr1 95888548 95888690 -101306742 + B1_Mus1 SINE Alu 5 147 -1 8 1316 240 364 20 29 chr1 95888986 95889088 -101306344 + RLTR13D3 LTR ERVK 1 101 -1013 8 1316 1736 16 0 0 chr1 95889785 95889977 -101305455 - B2_Mm1a SINE B2 0 193 2 8 1316 281 250 52 70 chr1 95889989 95890159 -101305273 + RLTR13D3 LTR ERVK 939 1052 -62 8 1316 1883 187 5 83 chr1 95890297 95890346 -101305086 - ORR1C1 LTR MaLR -2 376 333 8 1316 1216 113 43 5 chr1 95890346 95890532 -101304900 - B2_Mm1t SINE B2 0 193 1 8 1316 1883 187 5 83 chr1 95890532 95890890 -101304542 - ORR1C1 LTR MaLR -46 332 1 8 1316 1668 154 26 136 chr1 95891107 95891446 -101303986 + ORR1D1 LTR MaLR 1 304 -70 8 1316 246 81 0 0 chr1 95891446 95891483 -101303949 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 8 1316 899 143 0 39 chr1 95891488 95891641 -101303791 - B1_Mur3 SINE Alu -2 147 1 8 1316 1668 154 26 136 chr1 95891641 95891715 -101303717 + ORR1D1 LTR MaLR 305 374 0 8 1316 439 202 7 162 chr1 95892078 95892220 -101303212 - B1_Mur1 SINE Alu -9 140 21 8 1316 248 237 23 116 chr1 95893161 95893247 -101302185 - ID2 SINE ID -4 79 2 8 1316 1022 75 20 0 chr1 95893835 95893981 -101301451 - L1Md_F2 LINE L1 0 6582 6434 8 1316 513 224 8 79 chr1 95894151 95894173 -101301259 + PB1D9 SINE Alu 2 21 -99 8 1316 2621 150 116 23 chr1 95894173 95894699 -101300733 - RMER15 LTR ERVL 0 575 1 8 1316 513 224 8 79 chr1 95894699 95894802 -101300630 + PB1D9 SINE Alu 22 118 -2 8 1316 514 276 1 1 chr1 95894829 95894946 -101300486 + B1_Mur2 SINE Alu 2 118 -31 8 1316 2462 130 183 7 chr1 95894938 95895403 -101300029 - RMER4B LTR ERVK -11 574 28 8 1316 1032 125 89 0 chr1 95895384 95895552 -101299880 - B2_Mm2 SINE B2 0 195 13 8 1316 219 91 130 43 chr1 95895577 95895623 -101299809 + B1_Mur4 SINE Alu 100 149 -1 8 1316 627 98 0 0 chr1 95895634 95895726 -101299706 + (GGAA)n Simple_repeat Simple_repeat 2 93 0 8 1316 411 353 7 0 chr1 95897325 95897478 -101297954 - MER67C LTR ERV1 -195 516 363 8 1316 659 315 7 7 chr1 95897475 95897622 -101297810 + RSINE1 SINE B4 19 165 0 8 1316 279 0 0 0 chr1 95897642 95897673 -101297759 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1316 240 265 14 29 chr1 95897685 95897755 -101297677 - MER67C LTR ERV1 -334 377 309 8 1316 642 161 102 0 chr1 95897955 95898073 -101297359 - B1_Mus1 SINE Alu -18 130 1 8 1316 247 204 99 79 chr1 95898085 95898186 -101297246 - MER67C LTR ERV1 -606 105 3 8 1316 1922 150 0 19 chr1 95899054 95899367 -101296065 - ORR1A3 LTR MaLR 0 326 20 8 1316 387 302 8 0 chr1 95899620 95899739 -101295693 + L1MC5 LINE L1 6680 6799 -1162 8 1316 1186 119 16 42 chr1 95901295 95901488 -101293944 - B2_Mm2 SINE B2 -7 188 1 8 1316 2044 186 51 31 chr1 95901836 95901866 -101293566 + RMER4A LTR ERVK 4 35 -431 8 1316 225 0 0 0 chr1 95901866 95901891 -101293541 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1316 2044 186 51 31 chr1 95901891 95902310 -101293122 + RMER4A LTR ERVK 36 462 -4 8 1316 340 211 39 13 chr1 95902309 95902386 -101293046 + RMER4A LTR ERVK 308 386 -80 8 1316 456 19 0 0 chr1 95902386 95902439 -101292993 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 8 1316 592 151 36 36 chr1 95902453 95902563 -101292869 + RMER4A LTR ERVK 357 466 0 8 1316 300 158 0 0 chr1 95902946 95903003 -101292429 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1316 233 349 71 66 chr1 95903069 95903281 -101292151 - MLT1A LTR MaLR -123 251 39 8 1316 806 172 20 14 chr1 95907076 95907223 -101288209 + B1_Mur2 SINE Alu 2 149 0 8 1316 2436 136 162 18 chr1 95907321 95907779 -101287653 - RLTR28 LTR ERVL 0 524 1 8 1316 402 277 0 0 chr1 95907852 95907946 -101287486 - BC1_Mm scRNA scRNA -56 96 3 8 1316 243 0 0 0 chr1 95908147 95908174 -101287258 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1316 297 75 0 0 chr1 95908189 95908229 -101287203 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1316 1199 119 54 0 chr1 95908322 95908507 -101286925 - B2_Mm2 SINE B2 0 195 1 8 1316 382 196 549 0 chr1 95908521 95908665 -101286767 + RMER1C Other Other 1120 1342 0 8 1316 693 204 7 42 chr1 95908795 95908938 -101286494 - B1_Mur1 SINE Alu 0 149 12 8 1316 450 0 0 0 chr1 95909029 95909079 -101286353 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 8 1316 454 204 123 53 chr1 95909079 95909193 -101286239 - B1_Mus1 SINE Alu -26 122 1 8 1316 369 288 56 34 chr1 95909446 95909678 -101285754 - MTD LTR MaLR -13 406 136 8 1316 1119 273 61 49 chr1 95910603 95911031 -101284401 + RMER5 LTR ERV1 63 495 -39 8 1316 786 202 81 11 chr1 95911040 95911225 -101284207 - B3 SINE B2 -5 211 14 8 1316 579 254 30 0 chr1 95911689 95911854 -101283578 + Lx6 LINE L1 7264 7433 -27 8 1316 226 276 0 0 chr1 95912265 95912323 -101283109 + GA-rich Low_complexity Low_complexity 2 59 0 8 1316 360 0 0 0 chr1 95912564 95912604 -101282828 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1316 470 216 59 0 chr1 95912604 95912706 -101282726 + B3 SINE B2 109 216 0 8 1316 456 205 108 23 chr1 95912794 95912924 -101282508 - B1_Mus1 SINE Alu -7 141 1 8 1316 189 94 0 0 chr1 95912995 95913027 -101282405 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 8 1316 954 116 147 6 chr1 95913030 95913186 -101282246 - B2_Mm2 SINE B2 -17 178 1 8 1316 756 250 7 0 chr1 95913199 95913339 -101282093 - B1_Mur3 SINE Alu -8 141 1 8 1316 189 0 0 0 chr1 95913463 95913484 -101281948 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1316 466 205 0 0 chr1 95913488 95913571 -101281861 + B3 SINE B2 47 129 -87 8 1316 724 218 199 11 chr1 95913736 95913760 -101281672 - B3 SINE B2 -1 215 167 8 1316 279 0 0 0 chr1 95913760 95913791 -101281641 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1316 303 28 0 0 chr1 95913791 95913826 -101281606 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1316 724 218 199 11 chr1 95913826 95913981 -101281451 - B3 SINE B2 -50 166 2 8 1316 3386 45 2 0 chr1 95914023 95914420 -101281012 + MTB LTR MaLR 3 400 0 8 1316 1420 188 78 29 chr1 95914615 95914922 -101280510 + Lx5 LINE L1 6727 7048 -2 8 1316 742 255 32 11 chr1 95915384 95915550 -101279882 + B3A SINE B2 5 173 -25 8 1316 356 0 23 0 chr1 95915550 95915594 -101279838 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1316 742 255 32 11 chr1 95915594 95915617 -101279815 + B3A SINE B2 174 198 0 8 1316 24 0 0 0 chr1 95916067 95916091 -101279341 + AT_rich Low_complexity Low_complexity 1 24 0 8 1316 1363 88 39 0 chr1 95916094 95916275 -101279157 + B2_Mm2 SINE B2 1 188 -7 9 1316 1784 78 0 75 chr1 95918579 95918857 -101276575 + L1_Mus1 LINE L1 6311 6567 0 9 1316 2222 152 104 5 chr1 95920095 95920478 -101274954 - MTC LTR MaLR 0 421 1 9 1316 595 271 30 55 chr1 95920657 95920821 -101274611 + B3A SINE B2 1 160 -38 9 1316 786 188 14 14 chr1 95922566 95922712 -101272720 - B1_Mus1 SINE Alu 0 148 3 9 1316 910 318 28 14 chr1 95922769 95923053 -101272379 + B4A SINE B4 2 289 -3 9 1316 228 149 0 0 chr1 95923750 95923797 -101271635 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 9 1316 681 226 16 0 chr1 95923798 95923922 -101271510 + B3A SINE B2 1 126 -72 9 1316 27 62 0 0 chr1 95924864 95924912 -101270520 + AT_rich Low_complexity Low_complexity 1 48 0 9 1316 423 0 0 0 chr1 95924994 95925041 -101270391 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1316 332 271 14 0 chr1 95925054 95925124 -101270308 + ID_B1 SINE B4 90 160 -64 9 1316 1686 231 31 81 chr1 95925170 95925651 -101269781 - RLTR28B LTR ERVL -24 457 1 9 1316 622 259 118 0 chr1 95925668 95925880 -101269552 + L1MC1 LINE L1 5504 5740 -593 9 1316 531 112 0 0 chr1 95925923 95926003 -101269429 + (CCCCAA)n Simple_repeat Simple_repeat 2 81 0 9 1316 274 318 83 28 chr1 95926090 95926271 -101269161 + Lx8 LINE L1 7035 7225 -248 9 1316 759 112 0 18 chr1 95926343 95926507 -101268925 + (TCTA)n Simple_repeat Simple_repeat 3 163 0 9 1316 963 126 49 0 chr1 95926644 95926787 -101268645 + B1_Mur4 SINE Alu 1 150 0 9 1316 418 215 71 16 chr1 95926932 95927093 -101268339 + L1MC1 LINE L1 5825 5992 -1793 9 1316 1019 196 77 61 chr1 95927330 95927469 -101267963 - RLTR40 LTR ERVK -18 799 658 9 1316 189 0 0 0 chr1 95927469 95927490 -101267942 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 9 1316 1019 196 77 61 chr1 95927490 95927611 -101267821 - RLTR40 LTR ERVK -160 657 537 9 1316 216 0 0 0 chr1 95927614 95927638 -101267794 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1316 507 78 0 0 chr1 95927637 95927714 -101267718 + (GA)n Simple_repeat Simple_repeat 1 77 0 9 1316 213 39 0 0 chr1 95927754 95927780 -101267652 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1316 426 88 0 0 chr1 95927780 95927848 -101267584 + (GA)n Simple_repeat Simple_repeat 2 69 0 9 1316 2384 161 147 44 chr1 95927851 95928422 -101267010 - RLTR40 LTR ERVK -187 630 1 9 1316 282 286 110 66 chr1 95928905 95929133 -101266299 - RLTR15 LTR ERVK -18 341 104 9 1316 290 223 142 61 chr1 95929140 95929288 -101266144 - RLTR15 LTR ERVK -199 160 1 9 1316 261 0 0 0 chr1 95929648 95929677 -101265755 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1316 495 0 0 0 chr1 95929677 95929731 -101265701 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1316 502 219 194 8 chr1 95929731 95929855 -101265577 - B3A SINE B2 -50 148 2 9 1316 430 312 55 15 chr1 95930355 95930584 -101264848 - L1MB4 LINE L1 -267 5904 5675 9 1316 976 154 10 92 chr1 95930595 95930802 -101264630 - B2_Mm2 SINE B2 -4 191 2 9 1316 749 250 22 43 chr1 95931080 95931264 -101264168 + B3A SINE B2 3 182 -16 9 1316 563 188 44 18 chr1 95931286 95931400 -101264032 + PB1D9 SINE Alu 3 119 -1 9 1316 252 0 0 0 chr1 95932215 95932243 -101263189 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1316 206 350 30 36 chr1 95932785 95932951 -101262481 + (CATG)n Simple_repeat Simple_repeat 2 166 0 9 1316 860 126 7 53 chr1 95933636 95933787 -101261645 + URR1B DNA MER1_type 82 225 0 9 1316 1046 31 18 25 chr1 95934239 95934402 -101261030 + (TTCTC)n Simple_repeat Simple_repeat 4 165 0 9 1316 193 237 0 0 chr1 95935606 95935644 -101259788 + MIR SINE MIR 34 71 -137 9 1316 396 0 0 0 chr1 95936798 95936842 -101258590 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1316 452 283 28 0 chr1 95941348 95941454 -101253978 - PB1D10 SINE Alu -2 115 7 9 1316 3704 59 6 41 chr1 95941474 95941965 -101253467 + L1_Mus2 LINE L1 6093 6566 0 9 1316 762 303 22 18 chr1 95942159 95942381 -101253051 + B4A SINE B4 4 226 -66 9 1316 2011 199 187 31 chr1 95942380 95942450 -101252982 + RLTR40 LTR ERVK 60 143 -674 9 1316 864 161 15 0 chr1 95942450 95942587 -101252845 - B1_Mus2 SINE Alu -8 139 1 9 1316 2011 199 187 31 chr1 95942587 95942944 -101252488 + RLTR40 LTR ERVK 144 568 -249 9 1316 471 18 0 0 chr1 95942944 95943000 -101252432 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1316 927 82 0 0 chr1 95943000 95943147 -101252285 + (GA)n Simple_repeat Simple_repeat 1 147 0 9 1316 2011 199 187 31 chr1 95943147 95943238 -101252194 + RLTR40 LTR ERVK 569 654 -163 9 1316 379 49 49 0 chr1 95943238 95943299 -101252133 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 9 1316 2011 199 187 31 chr1 95943299 95943424 -101252008 + RLTR40 LTR ERVK 655 804 -13 9 1316 1118 232 51 51 chr1 95943520 95943793 -101251639 + B4A SINE B4 14 286 -6 9 1317 283 279 220 4 chr1 95945334 95945589 -101249843 + MLT1C LTR MaLR 7 316 -151 9 1317 311 269 83 77 chr1 95945621 95945651 -101249781 + ID_B1 SINE B4 54 219 -1 9 1317 688 178 96 0 chr1 95945651 95945786 -101249646 + B1_Mur3 SINE Alu 2 149 0 9 1317 302 368 0 0 chr1 95945886 95946003 -101249429 + PB1D10 SINE Alu 1 117 0 9 1317 1196 309 74 39 chr1 95946006 95946027 -101249405 + Lx9 LINE L1 6899 6918 -726 9 1317 533 55 14 0 chr1 95946027 95946100 -101249332 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 9 1317 1196 309 74 39 chr1 95946100 95946673 -101248759 + Lx9 LINE L1 6919 7514 -130 9 1317 279 0 0 0 chr1 95946673 95946704 -101248728 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1317 942 208 58 29 chr1 95946870 95947078 -101248354 + B3 SINE B2 3 216 0 9 1317 285 312 70 25 chr1 95947175 95947333 -101248099 + Lx9 LINE L1 7098 7262 -382 9 1317 195 42 0 0 chr1 95947363 95947387 -101248045 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1317 269 307 19 29 chr1 95950108 95950212 -101245220 + Tigger8 DNA MER2_type 233 335 -331 9 1317 214 250 19 0 chr1 95951904 95951956 -101243476 + C-rich Low_complexity Low_complexity 3 55 0 9 1317 2337 148 63 8 chr1 95952355 95952751 -101242681 + MTC LTR MaLR 4 421 0 9 1317 414 0 0 0 chr1 95953067 95953113 -101242319 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 9 1317 1246 48 0 0 chr1 95953213 95953359 -101242073 + B1_Mm SINE Alu 2 147 0 9 1317 3720 146 31 12 chr1 95953987 95954631 -101240801 - Lx LINE L1 -1 6653 5998 9 1317 12045 110 6 8 chr1 95954631 95957261 -101238171 - L1_Mus2 LINE L1 -3 6563 3937 9 1317 253 361 120 0 chr1 95957475 95957583 -101237849 - B3A SINE B2 -76 122 2 9 1317 523 199 60 128 chr1 95958209 95958544 -101236888 + RLTR15 LTR ERVK 31 342 -17 9 1317 983 63 24 52 chr1 95958567 95958817 -101236615 + (TCTA)n Simple_repeat Simple_repeat 1 242 0 9 1317 512 289 55 46 chr1 95959426 95959752 -101235680 + RLTR15 LTR ERVK 1 329 -30 9 1317 3735 121 40 2 chr1 95960125 95960705 -101234727 - L1_Mur2 LINE L1 -993 4884 4283 9 1317 2369 139 18 0 chr1 95960707 95961089 -101234343 + Lx LINE L1 4982 5370 -513 9 1317 710 118 35 7 chr1 95961089 95961234 -101234198 + RMER17B LTR ERVK 312 460 -498 9 1317 7126 108 18 19 chr1 95961248 95962546 -101232886 + Lx LINE L1 5357 6653 -1 9 1317 1451 70 5 0 chr1 95962550 95962736 -101232696 + B2_Mm1a SINE B2 1 187 -6 9 1317 1299 86 23 0 chr1 95962739 95962914 -101232518 + B2_Mm1t SINE B2 1 179 -14 9 1317 431 58 286 9 chr1 95962940 95963048 -101232384 + B2_Mm2 SINE B2 45 187 -8 9 1317 35 41 0 0 chr1 95963110 95963159 -101232273 + AT_rich Low_complexity Low_complexity 1 49 0 9 1317 1140 100 59 0 chr1 95963602 95963772 -101231660 + B2_Mm2 SINE B2 2 181 -14 9 1317 2300 131 3 3 chr1 95963844 95964190 -101231242 + ORR1A1 LTR MaLR 1 346 0 9 1317 1658 31 5 0 chr1 95964272 95964463 -101230969 + B2_Mm1t SINE B2 2 193 0 9 1317 348 295 16 16 chr1 95964675 95964799 -101230633 + MYSERV6-int LTR ERVK 545 668 -8291 9 1317 713 329 49 3 chr1 95964833 95965202 -101230230 + MYSERV6-int LTR ERVK 896 1281 -7678 9 1317 8701 24 0 0 chr1 95965221 95966281 -101229151 - L1Md_T LINE L1 0 6582 5523 9 1317 923 303 36 78 chr1 95966296 95966548 -101228884 + MYSERV6-int LTR ERVK 1292 1552 -7407 9 1317 1181 60 155 0 chr1 95966548 95966716 -101228716 + B2_Mm2 SINE B2 2 195 0 9 1317 923 303 36 78 chr1 95966716 95967025 -101228407 + MYSERV6-int LTR ERVK 1553 1829 -7130 9 1317 1926 151 133 0 chr1 95967025 95967402 -101228030 + RMER19B LTR ERVK 1 427 -475 9 1317 1845 153 83 6 chr1 95967398 95967734 -101227698 + RMER19B LTR ERVK 529 890 -12 9 1317 11368 181 37 50 chr1 95967736 95970362 -101225070 + MYSERV6-int LTR ERVK 1810 4400 -4559 9 1317 1853 229 84 19 chr1 95970365 95970903 -101224529 + MYSERV-int LTR ERVK 4263 4835 -1715 9 1317 619 319 30 64 chr1 95971100 95971181 -101224251 + RLTR42-int LTR ERVK 89 174 -5348 9 1317 4884 105 17 28 chr1 95971181 95971904 -101223528 + RLTR19B LTR ERVK 1 715 0 9 1317 1104 272 28 65 chr1 95971904 95972421 -101223011 + RLTR42-int LTR ERVK 175 836 -4686 9 1317 237 65 0 0 chr1 95972503 95972534 -101222898 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1317 716 128 0 53 chr1 95972536 95972668 -101222764 - B1_Mur4 SINE Alu -21 129 5 9 1317 295 210 16 174 chr1 95972561 95972682 -101222750 - MT2B LTR ERVL -343 258 157 9 1317 295 196 0 32 chr1 95972808 95972903 -101222529 + (TTAGGG)n Simple_repeat Simple_repeat 5 96 0 9 1317 2444 133 152 7 chr1 95972903 95973365 -101222067 + RMER15 LTR ERVL 1 529 -46 9 1317 323 106 0 0 chr1 95973731 95973778 -101221654 - tRNA-Met_ tRNA tRNA 0 76 30 9 1317 624 157 0 0 chr1 95973822 95973924 -101221508 - MT2B LTR ERVL -498 103 2 9 1317 458 186 23 0 chr1 95973965 95974051 -101221381 + RMER15-int LTR ERVL 1 88 -4911 9 1317 2446 260 35 51 chr1 95974112 95974833 -101220599 + RMER15-int LTR ERVL 833 1541 -3458 9 1317 694 233 17 0 chr1 95975022 95975263 -101220169 - RMER2 LTR ERV1 -221 346 1 9 1317 27 49 0 0 chr1 95975725 95975766 -101219666 + AT_rich Low_complexity Low_complexity 1 41 0 9 1317 401 233 30 48 chr1 95975971 95976138 -101219294 + (TTAGGG)n Simple_repeat Simple_repeat 5 168 0 9 1317 252 293 13 0 chr1 95976924 95976999 -101218433 + B1F2 SINE Alu 18 93 -56 9 1317 2288 161 41 5 chr1 95978203 95978621 -101216811 + RMER20A LTR ERVK 1 433 -83 9 1317 1514 72 0 5 chr1 95979016 95979211 -101216221 + B2_Mm2 SINE B2 2 195 0 9 1317 231 297 43 11 chr1 95979499 95979591 -101215841 - L1_Mur3 LINE L1 -6917 795 701 9 1317 350 309 20 0 chr1 95979643 95979795 -101215637 - L1_Mur3 LINE L1 -6992 720 566 9 1317 796 175 46 46 chr1 95979809 95979983 -101215449 + B3 SINE B2 43 216 0 1 1317 1524 169 133 60 chr1 95980542 95980939 -101214493 - RLTR23 LTR ERV1 -4 426 1 1 1317 26 0 0 0 chr1 95980973 95980999 -101214433 + AT_rich Low_complexity Low_complexity 1 26 0 1 1317 680 221 15 0 chr1 95981066 95981202 -101214230 - B1_Mur1 SINE Alu -1 148 11 1 1317 1580 225 53 28 chr1 95982091 95982521 -101212911 - RLTR11A LTR ERVK 0 528 30 1 1317 6396 98 40 85 chr1 95983437 95984519 -101210913 - RLTR13D4 LTR ERVK 0 1033 1 1 1317 467 133 33 0 chr1 95984650 95984740 -101210692 + MTD LTR MaLR 319 411 -8 1 1317 1526 58 16 0 chr1 95984901 95985089 -101210343 + B2_Mm2 SINE B2 2 192 -3 1 1317 31 44 0 0 chr1 95985465 95985510 -101209922 + AT_rich Low_complexity Low_complexity 1 45 0 1 1317 264 323 42 0 chr1 95986382 95986478 -101208954 - ORR1E LTR MaLR -236 123 24 1 1317 259 312 26 0 chr1 95986711 95986788 -101208644 - BC1_Mm scRNA scRNA -57 95 17 1 1317 1568 27 5 21 chr1 95986846 95987035 -101208397 + B2_Mm1a SINE B2 2 187 -6 1 1317 1613 131 7 18 chr1 95987047 95987319 -101208113 + ORR1A3 LTR MaLR 50 318 -8 1 1317 287 321 0 12 chr1 95987324 95987406 -101208026 - ID_B1 SINE B4 -34 190 110 1 1317 1880 147 0 3 chr1 95987458 95987759 -101207673 + RMER20B LTR ERVK 1 300 -327 1 1317 992 178 9 78 chr1 95987771 95987990 -101207442 + RMER20B LTR ERVK 423 626 -1 1 1317 628 236 209 0 chr1 95989292 95989474 -101205958 - ID_B1 SINE B4 -3 221 2 1 1317 1242 102 11 0 chr1 95989566 95989742 -101205690 - B2_Mm1t SINE B2 -14 179 2 1 1317 369 285 29 97 chr1 95989773 95989948 -101205484 + RSINE1 SINE B4 3 165 0 1 1317 420 283 14 0 chr1 95989949 95990087 -101205345 + (CA)n Simple_repeat Simple_repeat 2 141 0 1 1317 237 216 0 0 chr1 95990106 95990157 -101205275 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1317 402 21 0 0 chr1 95990160 95990207 -101205225 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1 1317 37755 62 13 5 chr1 95990317 95996312 -101199120 - L1Md_F2 LINE L1 0 6585 538 1 1317 3657 158 34 19 chr1 95996610 95997307 -101198125 - RMER6D LTR ERVK -10 710 3 1 1317 375 140 0 0 chr1 95997432 95997489 -101197943 + L1_Mur3 LINE L1 5014 5070 -810 1 1317 679 184 0 0 chr1 95997507 95997632 -101197800 + L1Md_F LINE L1 210 334 -6282 1 1317 383 91 0 0 chr1 95997632 95997687 -101197745 + L1Md_F LINE L1 174 228 -6291 1 1317 11915 66 33 10 chr1 95997688 96000000 -101195432 + L1Md_F LINE L1 263 2630 -3253 1 1317 23696 28 1 0 chr1 96000000 96002954 -101192478 + L1Md_T LINE L1 2631 5586 -297 1 1317 8930 7 0 3 chr1 96002954 96003952 -101191480 + L1Md_T LINE L1 5587 6581 -1 1 1317 9805 29 2 0 chr1 96003953 96005169 -101190263 + L1Md_A LINE L1 4369 5586 -297 2 1317 8620 26 0 0 chr1 96005169 96006165 -101189267 + L1Md_A LINE L1 5587 6582 0 2 1317 2647 142 41 4 chr1 96006168 96006634 -101188798 + Lx6 LINE L1 5279 5761 -119 3 1317 2509 220 78 88 chr1 96006635 96007564 -101187868 - RMER17B LTR ERVK 0 860 1 4 1317 4228 172 75 19 chr1 96007564 96008443 -101186989 + Lx6 LINE L1 5759 6686 -774 3 1317 5182 186 69 19 chr1 96008504 96010608 -101184824 - L1_Mur3 LINE L1 -3327 2553 331 5 1317 601 285 74 22 chr1 96010619 96010888 -101184544 - Lx8 LINE L1 -10 7463 7181 6 1317 246 293 0 40 chr1 96010949 96011025 -101184407 - PB1D7 SINE Alu -42 75 3 7 1317 392 266 21 31 chr1 96011036 96011133 -101184299 - PB1D7 SINE Alu 0 120 25 8 1317 7370 65 1 4 chr1 96011170 96012622 -101182810 - L1Md_F2 LINE L1 -12 6570 5123 9 1317 864 82 0 0 chr1 96012619 96012741 -101182691 - L1_Mus4 LINE L1 -260 6376 6255 1 1317 3885 89 14 13 chr1 96012743 96013297 -101182135 + L1_Mus3 LINE L1 6084 6638 0 1 1317 1125 244 8 4 chr1 96013309 96013560 -101181872 - Lx5 LINE L1 -616 6434 6183 1 1317 1814 289 49 6 chr1 96013575 96014223 -101181209 + Lx6 LINE L1 6455 7032 -18 3 1317 687 321 152 28 chr1 96014453 96014931 -101180501 - MLT1F1 LTR MaLR 0 569 19 1 1317 222 62 0 0 chr1 96015240 96015272 -101180160 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1317 369 0 0 0 chr1 96015322 96015363 -101180069 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1317 1111 102 13 0 chr1 96015363 96015520 -101179912 - B2_Mm1t SINE B2 -33 160 2 1 1317 30 27 0 0 chr1 96015523 96015560 -101179872 + AT_rich Low_complexity Low_complexity 1 37 0 1 1317 714 211 42 0 chr1 96015560 96015702 -101179730 + B1_Mur3 SINE Alu 1 148 -1 1 1317 408 272 14 14 chr1 96016069 96016207 -101179225 + L1M2 LINE L1 5550 5687 -604 1 1317 5166 157 21 4 chr1 96016208 96016350 -101179082 + L1VL2 LINE L1 377 520 -6114 2 1317 1162 44 189 0 chr1 96016350 96016509 -101178923 + L1Md_F2 LINE L1 6382 6570 -12 2 1317 15346 139 19 37 chr1 96016509 96018970 -101176462 + L1VL2 LINE L1 521 3005 -2878 2 1317 1383 46 0 0 chr1 96018970 96019143 -101176289 + L1_Mus1 LINE L1 6395 6567 0 2 1317 15346 132 18 50 chr1 96019143 96020390 -101175042 + L1VL2 LINE L1 3006 4147 -1736 2 1317 2664 132 5 2 chr1 96020387 96020828 -101174604 + L1VL2 LINE L1 4722 5163 -720 2 1317 629 307 151 60 chr1 96021004 96021182 -101174250 + MLT2C1 LTR ERVL 1 209 -188 2 1317 658 260 120 0 chr1 96021182 96021374 -101174058 - B3 SINE B2 -1 215 1 2 1317 629 307 151 60 chr1 96021374 96021514 -101173918 + MLT2C1 LTR ERVL 210 348 -49 2 1317 232 227 23 0 chr1 96021525 96021613 -101173819 + CT-rich Low_complexity Low_complexity 1 90 0 2 1317 326 172 0 0 chr1 96023423 96023481 -101171951 - PB1D10 SINE Alu -15 102 45 2 1317 2214 124 41 3 chr1 96023620 96024008 -101171424 - Lx3B LINE L1 -563 6410 6008 2 1317 728 278 0 36 chr1 96024031 96024199 -101171233 - B3A SINE B2 -35 163 2 2 1317 21 0 0 0 chr1 96024313 96024334 -101171098 + AT_rich Low_complexity Low_complexity 1 21 0 2 1317 2129 122 3 3 chr1 96024459 96024772 -101170660 - ORR1A4 LTR MaLR 0 329 17 3 1317 1162 121 11 16 chr1 96024842 96025027 -101170405 - B2_Mm2 SINE B2 -6 189 6 3 1317 225 65 0 0 chr1 96025148 96025179 -101170253 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1317 5549 38 9 0 chr1 96025286 96025953 -101169479 - L1Md_A LINE L1 -2 6580 5908 3 1317 29075 87 4 10 chr1 96025953 96030921 -101164511 - L1Md_A LINE L1 -580 5303 368 3 1317 3983 209 27 38 chr1 96030936 96031639 -101163793 - Lx7 LINE L1 -218 7478 6795 3 1317 901 216 295 54 chr1 96031639 96032046 -101163386 + RLTR16 LTR ERVK 1 505 0 3 1317 3983 209 27 38 chr1 96032046 96032269 -101163163 - Lx7 LINE L1 -902 6794 6562 3 1317 2259 272 73 44 chr1 96032279 96033249 -101162183 + Lx9 LINE L1 6618 7615 -29 3 1317 291 238 106 8 chr1 96034153 96034276 -101161156 - L1MA4 LINE L1 -364 5936 5802 3 1317 439 123 0 24 chr1 96034299 96034382 -101161050 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1317 576 289 82 3 chr1 96034418 96034787 -101160645 - L1MA4 LINE L1 -640 5657 5267 3 1317 540 293 202 28 chr1 96034844 96035170 -101160262 + MLT1F2 LTR MaLR 172 554 -6 3 1317 501 194 26 0 chr1 96035227 96035351 -101160081 - B1_Mus2 SINE Alu -9 140 7 4 1317 22 0 0 0 chr1 96036153 96036175 -101159257 + AT_rich Low_complexity Low_complexity 1 22 0 4 1317 207 162 0 0 chr1 96036448 96036485 -101158947 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 4 1317 22 0 0 0 chr1 96036851 96036873 -101158559 + AT_rich Low_complexity Low_complexity 1 22 0 4 1317 322 267 34 17 chr1 96036919 96037037 -101158395 - PB1D7 SINE Alu 0 120 1 4 1317 551 197 21 20 chr1 96037561 96037702 -101157730 - B3 SINE B2 0 216 76 4 1317 459 269 72 145 chr1 96037918 96037955 -101157477 - MTC LTR MaLR -6 413 382 4 1317 1401 71 11 5 chr1 96037955 96038140 -101157292 + B2_Mm2 SINE B2 1 186 -9 4 1317 459 269 72 145 chr1 96038140 96038337 -101157095 - MTC LTR MaLR -38 381 196 4 1317 8631 2 0 0 chr1 96038341 96039571 -101155861 - L1Md_A LINE L1 0 6582 5353 4 1317 932 183 61 56 chr1 96039571 96039750 -101155682 - MTC LTR MaLR -194 227 43 4 1317 1969 155 268 41 chr1 96039750 96040309 -101155123 - RMER6C LTR ERVK 0 690 5 4 1317 932 183 61 56 chr1 96040309 96040343 -101155089 - MTC LTR MaLR -379 42 13 4 1317 351 0 0 0 chr1 96040348 96040387 -101155045 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1317 312 27 0 0 chr1 96040387 96040423 -101155009 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1317 253 138 117 33 chr1 96040697 96040757 -101154675 - RMER6D LTR ERVK -542 178 114 5 1317 776 153 0 0 chr1 96041888 96042012 -101153420 + B1_Mus1 SINE Alu 25 148 0 5 1317 461 88 12 0 chr1 96042163 96042243 -101153189 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 5 1317 791 317 5 0 chr1 96042266 96042471 -101152961 - ID_B1 SINE B4 -18 206 1 5 1317 291 239 206 0 chr1 96042484 96042576 -101152856 - PB1D10 SINE Alu -6 111 1 5 1317 235 262 47 59 chr1 96043427 96043512 -101151920 + MIR3 SINE MIR 87 170 -38 5 1317 796 286 52 20 chr1 96044150 96044400 -101151032 + B4A SINE B4 3 260 -32 5 1317 637 188 13 0 chr1 96044590 96044739 -101150693 + CT-rich Low_complexity Low_complexity 3 153 0 5 1317 23 0 0 0 chr1 96044771 96044794 -101150638 + AT_rich Low_complexity Low_complexity 1 23 0 6 1317 324 346 30 23 chr1 96045058 96045191 -101150241 + MLT1G LTR MaLR 15 148 -443 6 1317 3098 64 18 0 chr1 96045425 96045818 -101149614 + MTB LTR MaLR 1 400 0 6 1317 291 310 68 34 chr1 96047029 96047146 -101148286 + MLT1J LTR MaLR 77 197 -315 6 1317 207 100 0 0 chr1 96047186 96047216 -101148216 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1317 1456 69 0 0 chr1 96047218 96047420 -101148012 + L1Md_F2 LINE L1 6350 6551 -31 6 1317 33809 35 0 0 chr1 96047421 96053078 -101142354 + L1Md_T LINE L1 1 5589 -297 6 1317 8904 7 2 4 chr1 96053078 96054076 -101141356 + L1Md_T LINE L1 5590 6585 0 6 1317 234 160 0 0 chr1 96054098 96054148 -101141284 + A-rich Low_complexity Low_complexity 1 50 0 6 1317 202 71 0 0 chr1 96054172 96054200 -101141232 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1317 446 177 24 8 chr1 96054205 96054330 -101141102 + (TA)n Simple_repeat Simple_repeat 1 127 0 6 1317 415 144 83 89 chr1 96054337 96054505 -101140927 + Lx9 LINE L1 7477 7643 -1 7 1317 268 364 10 25 chr1 96054886 96055089 -101140343 + MER3 DNA MER1_type 7 206 -3 7 1317 435 271 81 8 chr1 96055107 96055230 -101140202 + B3A SINE B2 1 132 -66 7 1317 235 152 36 60 chr1 96055255 96055339 -101140093 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 7 1317 693 295 37 30 chr1 96055613 96056025 -101139407 + RMER1B Other Other 164 752 -590 7 1317 641 203 8 0 chr1 96056031 96056154 -101139278 + RMER1C Other Other 1069 1192 -150 7 1317 288 0 0 0 chr1 96056154 96056186 -101139246 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1317 234 193 0 0 chr1 96056186 96056243 -101139189 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1317 22 56 0 0 chr1 96056349 96056385 -101139047 + AT_rich Low_complexity Low_complexity 1 36 0 7 1317 203 239 22 0 chr1 96056707 96056753 -101138679 + GA-rich Low_complexity Low_complexity 2 48 0 7 1317 934 251 57 43 chr1 96057174 96057453 -101137979 + ORR1C2 LTR MaLR 100 382 -2 7 1317 1157 223 89 3 chr1 96058190 96058482 -101136950 + Lx6 LINE L1 7118 7434 -26 8 1317 14626 167 37 20 chr1 96058904 96060021 -101135411 + L1VL4 LINE L1 895 2051 -3826 8 1317 492 18 0 0 chr1 96060021 96060078 -101135354 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1317 14626 153 28 28 chr1 96060078 96060475 -101134957 + L1VL4 LINE L1 2052 2453 -3424 8 1317 612 0 0 0 chr1 96060475 96060543 -101134889 + (CTAAA)n Simple_repeat Simple_repeat 3 70 0 8 1317 14626 153 28 28 chr1 96060543 96062401 -101133031 + L1VL4 LINE L1 2454 4287 -1590 8 1317 27 29 0 0 chr1 96062442 96062476 -101132956 + AT_rich Low_complexity Low_complexity 1 34 0 8 1317 1692 119 62 151 chr1 96062826 96063183 -101132249 + ORR1A2 LTR MaLR 1 325 -2 8 1317 1072 225 9 0 chr1 96064879 96065106 -101130326 - Lx9 LINE L1 -397 7247 7019 8 1317 1637 183 10 0 chr1 96065105 96065406 -101130026 + Lx9 LINE L1 6707 7010 -634 8 1317 181 219 73 0 chr1 96065537 96065578 -101129854 - L2b LINE L2 -61 3314 3271 8 1317 270 212 172 23 chr1 96065681 96065768 -101129664 + PB1D10 SINE Alu 18 117 0 8 1317 362 307 111 91 chr1 96065962 96066259 -101129173 + L2a LINE L2 526 828 -2591 8 1317 732 230 101 43 chr1 96066323 96066532 -101128900 - RMER21B LTR ERV1 -275 567 347 9 1317 225 304 0 11 chr1 96066564 96066657 -101128775 - RMER21B LTR ERV1 -661 181 90 9 1317 423 341 80 40 chr1 96066664 96066988 -101128444 + L2a LINE L2 773 1109 -2310 8 1317 1342 87 41 0 chr1 96066993 96067188 -101128244 + Lx3B LINE L1 6397 6599 -374 9 1317 880 100 0 8 chr1 96067184 96067315 -101128117 - Lx3A LINE L1 -258 6723 6594 9 1317 3543 41 0 11 chr1 96067355 96067796 -101127636 - L1Md_F2 LINE L1 -1 6581 6146 9 1317 2866 134 0 4 chr1 96067840 96068318 -101127114 - L1_Mur2 LINE L1 -764 5113 4638 9 1317 22 35 0 0 chr1 96068368 96068397 -101127035 + AT_rich Low_complexity Low_complexity 1 29 0 9 1317 31 26 0 0 chr1 96068451 96068489 -101126943 + AT_rich Low_complexity Low_complexity 1 38 0 9 1317 572 315 67 5 chr1 96068489 96068729 -101126703 - L1MB3 LINE L1 -165 6024 5759 9 1317 204 395 64 20 chr1 96068738 96068942 -101126490 + L2a LINE L2 1321 1533 -1886 8 1317 3355 232 75 5 chr1 96069576 96070443 -101124989 - RCHARR1 DNA MER1_type -46 928 1 9 1317 228 383 73 32 chr1 96071374 96071498 -101123934 + L2a LINE L2 3297 3425 -1 8 1317 897 149 11 6 chr1 96071814 96071989 -101123443 + Lx2A1 LINE L1 6830 7005 -3 9 1317 1873 141 56 23 chr1 96073044 96073413 -101122019 - L1_Mur3 LINE L1 -3487 2393 2017 1 1317 210 37 0 0 chr1 96073413 96073440 -101121992 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1317 1873 141 56 23 chr1 96073440 96073498 -101121934 - L1_Mur3 LINE L1 -3864 2016 1952 1 1317 2347 173 218 18 chr1 96073514 96074114 -101121318 + RMER19A LTR ERVK 1 720 -17 1 1317 676 170 0 88 chr1 96074125 96074221 -101121211 - L1_Mur3 LINE L1 -3978 1905 1820 1 1317 1619 32 5 0 chr1 96074221 96074411 -101121021 + B2_Mm1t SINE B2 2 192 -1 1 1317 676 198 0 88 chr1 96074411 96074498 -101120934 - L1_Mur3 LINE L1 -4055 1825 1738 1 1317 1685 208 10 35 chr1 96074527 96074931 -101120501 - L1_Mur3 LINE L1 -7278 450 57 1 1317 2572 56 9 12 chr1 96075321 96075649 -101119783 - ORR1A2 LTR MaLR 0 327 1 1 1318 7755 122 20 15 chr1 96076292 96077474 -101117958 + Lx4A LINE L1 5868 7055 -3 1 1318 23 33 0 0 chr1 96077474 96077504 -101117928 + AT_rich Low_complexity Low_complexity 1 30 0 1 1318 4140 155 89 65 chr1 96078246 96079123 -101116309 + RMER19B LTR ERVK 5 902 0 1 1318 2610 132 2 54 chr1 96079163 96079256 -101116176 + MTC LTR MaLR 1 90 -331 1 1318 446 33 0 0 chr1 96079256 96079316 -101116116 + L1_Mus2 LINE L1 6507 6566 0 1 1318 2610 132 2 54 chr1 96079316 96079645 -101115787 + MTC LTR MaLR 91 401 -20 1 1318 1149 137 22 0 chr1 96079640 96079822 -101115610 + MTC LTR MaLR 236 421 0 1 1318 21 36 0 0 chr1 96079906 96079934 -101115498 + AT_rich Low_complexity Low_complexity 1 28 0 1 1318 460 262 75 5 chr1 96082692 96082880 -101112552 + L1MC1 LINE L1 5705 5905 -428 1 1318 883 259 5 28 chr1 96082883 96083094 -101112338 + ID_B1 SINE B4 1 206 -18 1 1318 281 316 37 82 chr1 96083134 96083250 -101112182 - B1F1 SINE Alu -39 108 3 1 1318 243 294 0 11 chr1 96083251 96083344 -101112088 + L1MC1 LINE L1 5916 6007 -326 1 1318 258 253 81 117 chr1 96083334 96083531 -101111901 + L1MC1 LINE L1 6116 6305 -28 1 1318 22 35 0 0 chr1 96083637 96083666 -101111766 + AT_rich Low_complexity Low_complexity 1 29 0 1 1318 684 216 0 0 chr1 96083678 96083794 -101111638 - B3 SINE B2 -100 116 1 1 1318 331 325 97 40 chr1 96083895 96084244 -101111188 - Charlie7 DNA MER1_type -2198 414 46 1 1318 196 286 159 45 chr1 96084295 96084540 -101110892 - L2 LINE L2 -1351 2068 1796 1 1318 185 364 47 42 chr1 96084658 96084850 -101110582 + L4 LINE RTE 498 690 -1339 1 1318 459 151 23 11 chr1 96086077 96086164 -101109268 + MT2A LTR ERVL 1 88 -445 1 1318 4693 191 50 47 chr1 96086186 96087286 -101108146 - Lx7 LINE L1 0 7696 6594 1 1318 2586 178 19 21 chr1 96087289 96087852 -101107580 - L1_Mur3 LINE L1 -715 5165 4604 1 1318 263 169 0 33 chr1 96087848 96087909 -101107523 - Lx6 LINE L1 -1175 6285 6227 1 1318 3158 133 153 87 chr1 96087916 96088064 -101107368 - RMER19A LTR ERVK 0 737 601 1 1318 1259 89 39 6 chr1 96088064 96088245 -101107187 - B2_Mm2 SINE B2 -7 188 2 1 1318 3158 133 153 87 chr1 96088245 96088787 -101106645 - RMER19A LTR ERVK -137 600 1 1 1318 3415 34 0 3 chr1 96089102 96089582 -101105850 + L1Md_F2 LINE L1 5445 5923 -659 1 1318 7596 46 4 1 chr1 96089581 96090611 -101104821 - L1_Mm LINE L1 -3305 2578 1546 1 1318 37338 32 13 11 chr1 96090605 96092255 -101103177 - L1Md_A LINE L1 0 6582 4925 1 1318 228 183 46 77 chr1 96092255 96092320 -101103112 + RMER20A LTR ERVK 186 248 -268 1 1318 37338 32 13 11 chr1 96092320 96096807 -101098625 - L1Md_A LINE L1 0 4924 413 1 1318 8514 81 2 6 chr1 96096807 96098144 -101097288 - L1Md_F LINE L1 -3413 2470 1140 1 1318 4642 125 40 22 chr1 96098120 96098954 -101096478 - L1Md_F LINE L1 -5411 1205 357 1 1318 3948 138 118 99 chr1 96098964 96099828 -101095604 - RMER19B LTR ERVK -13 889 10 1 1318 1171 245 129 5 chr1 96099830 96100203 -101095229 + MTD LTR MaLR 1 419 0 1 1318 1576 220 70 30 chr1 96100508 96100907 -101094525 + MTD LTR MaLR 5 419 0 1 1318 219 146 0 0 chr1 96101722 96101763 -101093669 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 1318 1023 129 0 0 chr1 96101870 96102048 -101093384 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1318 194 314 0 0 chr1 96104429 96104499 -101090933 + MIRb SINE MIR 160 229 -39 1 1318 1675 112 54 0 chr1 96105211 96105470 -101089962 + Lx3C LINE L1 6699 6971 -5 1 1318 23 0 0 0 chr1 96105571 96105594 -101089838 + AT_rich Low_complexity Low_complexity 1 23 0 1 1318 294 95 0 0 chr1 96105830 96105872 -101089560 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1318 180 0 0 0 chr1 96106145 96106165 -101089267 + (TATG)n Simple_repeat Simple_repeat 1 20 0 1 1318 189 309 124 47 chr1 96106240 96106369 -101089063 - L2b LINE L2 -18 3357 3219 1 1318 239 196 0 0 chr1 96107200 96107251 -101088181 - HAL1 LINE L1 -135 2372 2322 1 1318 297 242 248 38 chr1 96107511 96107644 -101087788 + MLT1D LTR MaLR 284 444 -61 1 1318 728 311 116 43 chr1 96108184 96108201 -101087231 - MT2A LTR ERVL -7 526 510 1 1318 1235 149 56 0 chr1 96108201 96108415 -101087017 - URR1A DNA MER1_type 0 226 1 1 1318 728 311 116 43 chr1 96108415 96108837 -101086595 - MT2A LTR ERVL -24 509 51 1 1318 351 0 0 0 chr1 96108837 96108876 -101086556 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1318 728 311 116 43 chr1 96108876 96108925 -101086507 - MT2A LTR ERVL -483 50 2 1 1318 242 244 0 12 chr1 96108934 96109017 -101086415 + (TATG)n Simple_repeat Simple_repeat 4 85 0 1 1318 327 320 206 29 chr1 96109032 96109309 -101086123 - HAL1 LINE L1 -1600 907 582 1 1318 693 0 0 0 chr1 96110199 96110276 -101085156 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1 1318 5270 173 131 17 chr1 96110425 96111612 -101083820 - Lx7 LINE L1 0 7696 6375 1 1318 204 125 0 0 chr1 96111612 96111644 -101083788 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1318 334 318 0 0 chr1 96111705 96111812 -101083620 + PB1D10 SINE Alu 2 108 -9 1 1318 683 284 77 19 chr1 96112062 96112321 -101083111 - Lx8 LINE L1 -213 7260 6987 1 1318 200 0 0 155 chr1 96112326 96112468 -101082964 + (CATCT)n Simple_repeat Simple_repeat 2 121 0 1 1318 453 283 48 0 chr1 96112470 96112636 -101082796 - Lx8 LINE L1 -444 7029 6856 1 1318 180 0 0 0 chr1 96113811 96113831 -101081601 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1318 203 193 35 17 chr1 96113931 96113989 -101081443 + T-rich Low_complexity Low_complexity 2 60 0 1 1318 3832 53 4 1 chr1 96114505 96115209 -101080223 - L1_Mus1 LINE L1 -493 6074 5369 1 1318 3934 42 2 11 chr1 96115209 96115684 -101079748 + L1_Mus1 LINE L1 6095 6565 -2 1 1318 378 281 0 24 chr1 96116359 96116443 -101078989 - RSINE1 SINE B4 0 165 84 1 1318 323 154 15 0 chr1 96116476 96116541 -101078891 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1 1318 1007 142 6 0 chr1 96116620 96116796 -101078636 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 1318 299 273 40 10 chr1 96116974 96117074 -101078358 - Cheshire DNA MER1_type 0 2420 2318 1 1318 228 361 48 0 chr1 96117086 96117169 -101078263 - Cheshire DNA MER1_type -2321 99 13 1 1318 445 295 43 7 chr1 96118391 96118531 -101076901 - B1F SINE Alu -2 147 3 1 1318 866 221 33 0 chr1 96118569 96118750 -101076682 - B3A SINE B2 -10 188 2 1 1318 2182 206 10 28 chr1 96118888 96119391 -101076041 - Lx7 LINE L1 -511 7185 6692 1 1318 1368 199 291 8 chr1 96119397 96119785 -101075647 + Lx5 LINE L1 6255 6752 -298 1 1318 786 187 0 0 chr1 96119785 96119940 -101075492 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1318 387 0 0 0 chr1 96119940 96119983 -101075449 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1318 279 0 0 0 chr1 96119983 96120014 -101075418 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1318 381 272 81 35 chr1 96120014 96120167 -101075265 + Lx5 LINE L1 6735 6956 -102 1 1318 356 0 23 0 chr1 96120167 96120211 -101075221 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1318 342 272 233 89 chr1 96120211 96120315 -101075117 + Lx5 LINE L1 6957 7052 -6 1 1318 408 222 0 24 chr1 96120336 96120419 -101075013 - MT2A LTR ERVL -437 96 16 1 1318 660 172 0 8 chr1 96120425 96120542 -101074890 - Lx7 LINE L1 -1076 6620 6505 1 1318 629 257 7 7 chr1 96120870 96121015 -101074417 - B1_Mur3 SINE Alu -3 146 2 1 1318 463 269 40 107 chr1 96121055 96121205 -101074227 - RSINE1 SINE B4 -14 151 12 1 1318 198 103 0 0 chr1 96121381 96121410 -101074022 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1318 1298 14 0 0 chr1 96121410 96121557 -101073875 - B1_Mm SINE Alu 0 147 1 1 1318 2384 305 65 33 chr1 96121563 96122754 -101072678 - Lx8 LINE L1 -112 7361 6132 1 1318 3004 231 10 76 chr1 96122853 96123763 -101071669 - Lx7 LINE L1 0 7696 6847 1 1318 2161 214 120 8 chr1 96124267 96124855 -101070577 + RMER1B Other Other 157 1001 -65 1 1318 32639 78 12 11 chr1 96124856 96130198 -101065234 + L1Md_F3 LINE L1 220 5571 -315 1 1318 2634 40 0 9 chr1 96130198 96130526 -101064906 + L1Md_F3 LINE L1 6249 6573 -14 1 1318 393 72 0 0 chr1 96130528 96130597 -101064835 + RMER1B Other Other 998 1066 0 1 1318 971 193 5 37 chr1 96130691 96130906 -101064526 + RMER10A LTR ERVL 18 225 -217 1 1318 252 0 0 0 chr1 96130923 96130951 -101064481 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1 1318 329 243 219 45 chr1 96131025 96131180 -101064252 + RMER10A LTR ERVL 261 442 0 1 1318 525 199 8 8 chr1 96131518 96131650 -101063782 - Lx9 LINE L1 -8 7636 7505 1 1318 272 340 81 64 chr1 96132017 96132300 -101063132 - MamRep605 Unknown Unknown -208 668 381 1 1318 37394 16 11 16 chr1 96132541 96134191 -101061241 - L1Md_A LINE L1 0 6582 4926 1 1318 228 183 46 77 chr1 96134191 96134256 -101061176 + RMER20A LTR ERVK 186 248 -268 1 1318 37394 16 11 16 chr1 96134256 96138927 -101056505 - L1Md_A LINE L1 0 4925 232 1 1318 31618 84 5 15 chr1 96138985 96145198 -101050234 - L1Md_F2 LINE L1 -3 6579 430 1 1318 579 29 0 0 chr1 96145535 96145604 -101049828 + (CATAG)n Simple_repeat Simple_repeat 2 70 0 1 1318 207 0 0 0 chr1 96146044 96146067 -101049365 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1318 271 269 61 15 chr1 96146085 96146217 -101049215 + L1MA8 LINE L1 6129 6266 -25 1 1318 429 274 22 7 chr1 96146314 96146450 -101048982 + B1F1 SINE Alu 3 140 -9 1 1318 600 70 0 0 chr1 96148236 96148322 -101047110 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1318 477 0 0 0 chr1 96148412 96148465 -101046967 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 1318 405 39 0 0 chr1 96148467 96148518 -101046914 - B1_Mur4 SINE Alu -6 144 94 1 1318 369 0 0 0 chr1 96148645 96148686 -101046746 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1318 989 169 5 5 chr1 96148707 96148909 -101046523 - L1_Mur3 LINE L1 -1973 3907 3706 1 1318 690 13 0 0 chr1 96148964 96149043 -101046389 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 1318 1610 61 42 0 chr1 96149258 96149470 -101045962 - ORR1A2 LTR MaLR 0 327 107 1 1318 669 146 161 43 chr1 96149481 96149667 -101045765 - Lx LINE L1 0 6654 6447 1 1318 651 217 11 17 chr1 96149667 96149815 -101045617 - ORR1A1 LTR MaLR -211 173 1 2 1318 234 62 0 0 chr1 96149937 96149969 -101045463 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1318 931 40 8 8 chr1 96150915 96151040 -101044392 + (TTCC)n Simple_repeat Simple_repeat 4 128 0 2 1318 36120 43 2 4 chr1 96151043 96157639 -101037793 - L1Md_T LINE L1 0 6585 59 2 1318 1213 79 6 11 chr1 96157641 96157821 -101037611 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1318 405 0 0 0 chr1 96157823 96157868 -101037564 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 2 1318 1116 86 6 17 chr1 96157868 96158045 -101037387 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 1318 2494 94 77 11 chr1 96158113 96158488 -101036944 - Lx3A LINE L1 -8 6973 6574 2 1318 354 183 0 0 chr1 96159195 96159266 -101036166 + CT-rich Low_complexity Low_complexity 4 74 0 2 1318 1348 224 121 38 chr1 96160575 96160947 -101034485 + MTD LTR MaLR 17 419 0 2 1318 374 104 130 29 chr1 96161427 96161496 -101033936 - B1_Mur3 SINE Alu 0 149 74 2 1318 354 156 62 0 chr1 96161577 96161641 -101033791 - B1_Mur1 SINE Alu -7 142 75 2 1318 731 185 0 20 chr1 96161641 96161790 -101033642 + Lx6 LINE L1 6639 6784 -676 2 1318 359 143 47 12 chr1 96161790 96161875 -101033557 + RLTR10D LTR ERVK 1 88 -271 2 1318 3811 156 131 72 chr1 96161925 96162766 -101032666 - RMER19B LTR ERVK -12 890 1 2 1318 2131 235 106 16 chr1 96162767 96163342 -101032090 + Lx6 LINE L1 6830 7456 -4 2 1318 762 274 132 18 chr1 96163343 96163474 -101031958 - L1MA4 LINE L1 -378 5922 5790 2 1318 456 19 0 0 chr1 96163474 96163527 -101031905 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1318 762 274 132 18 chr1 96163527 96163849 -101031583 - L1MA4 LINE L1 -511 5789 5417 2 1318 230 252 32 73 chr1 96164260 96164384 -101031048 + L1MA5A LINE L1 6156 6274 -23 2 1318 309 201 106 0 chr1 96165898 96165986 -101029446 - PB1D10 SINE Alu -2 118 8 2 1318 990 134 215 0 chr1 96166922 96167108 -101028324 + URR1A DNA MER1_type 1 226 0 2 1318 2893 39 5 67 chr1 96167611 96168000 -101027432 + RLTR10B2 LTR ERVK 1 365 0 2 1318 383 223 60 30 chr1 96168034 96168168 -101027264 - Lx7 LINE L1 0 7696 7559 2 1318 1534 193 57 3 chr1 96168258 96168642 -101026790 - Lx7 LINE L1 -376 7320 6916 2 1318 2027 132 58 8 chr1 96169668 96170031 -101025401 + ORR1B1 LTR MaLR 24 394 0 2 1318 289 255 102 7 chr1 96170052 96170151 -101025281 + B1F SINE Alu 10 115 -2 2 1318 661 281 44 165 chr1 96170208 96170942 -101024490 + L1MA9 LINE L1 5447 6091 -221 2 1318 675 329 74 12 chr1 96171064 96171196 -101024236 - MTE2a LTR MaLR -43 336 197 2 1318 219 88 0 0 chr1 96171196 96171230 -101024202 + (CTTG)n Simple_repeat Simple_repeat 1 34 0 2 1318 675 329 74 12 chr1 96171230 96171355 -101024077 - MTE2a LTR MaLR -183 196 65 2 1318 281 217 33 0 chr1 96171846 96171906 -101023526 - MTE2a LTR MaLR -317 62 1 2 1318 240 293 104 37 chr1 96172130 96172252 -101023180 - B1F SINE Alu 0 120 1 2 1318 359 231 38 25 chr1 96172387 96172467 -101022965 + ID4 SINE ID 3 83 0 2 1318 755 188 40 7 chr1 96172662 96172842 -101022590 + B3 SINE B2 2 191 -4 2 1318 1933 234 63 53 chr1 96172862 96173526 -101021906 - Lx9 LINE L1 -27 7617 6947 2 1318 3136 217 61 25 chr1 96173530 96173598 -101021834 + L1_Rod LINE L1 4705 4771 -1076 2 1318 3275 176 149 90 chr1 96173598 96174450 -101020982 + RMER19B LTR ERVK 1 902 0 2 1318 3136 217 61 25 chr1 96174450 96175303 -101020129 + L1_Rod LINE L1 4772 5659 -188 2 1318 582 94 12 48 chr1 96175307 96175475 -101019957 + (CCAA)n Simple_repeat Simple_repeat 2 163 0 2 1318 229 105 70 0 chr1 96175488 96175545 -101019887 + A-rich Low_complexity Low_complexity 3 63 0 2 1318 337 279 118 53 chr1 96175691 96175861 -101019571 + MIRb SINE MIR 69 249 -19 2 1318 1280 251 95 32 chr1 96179195 96179573 -101015859 + MTD LTR MaLR 6 407 -12 2 1318 233 356 58 0 chr1 96179714 96179818 -101015614 - MIR SINE MIR -104 158 49 2 1318 444 286 27 48 chr1 96179932 96180079 -101015353 - RSINE1 SINE B4 -19 146 3 2 1318 2179 52 0 0 chr1 96180351 96180623 -101014809 - L1Md_A LINE L1 0 6582 6311 2 1318 470 18 0 0 chr1 96180623 96180680 -101014752 + L1Md_F2 LINE L1 6260 6316 -266 2 1318 949 319 68 49 chr1 96180695 96181222 -101014210 - Lx8 LINE L1 -187 7286 6750 2 1318 1081 257 27 32 chr1 96181372 96181657 -101013775 - L1_Mur3 LINE L1 -2363 3517 3229 2 1318 1083 51 106 25 chr1 96181657 96181817 -101013615 - L1Md_F2 LINE L1 -12 6570 6398 2 1318 1081 257 27 32 chr1 96181817 96181973 -101013459 - L1_Mur3 LINE L1 -2652 3228 3078 2 1318 29 0 0 0 chr1 96181974 96182003 -101013429 + AT_rich Low_complexity Low_complexity 1 29 0 2 1318 229 236 0 18 chr1 96182096 96182152 -101013280 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 2 1318 311 281 39 0 chr1 96182155 96182283 -101013149 - Lx9 LINE L1 -127 7517 7385 2 1318 318 180 0 0 chr1 96182366 96182427 -101013005 + GA-rich Low_complexity Low_complexity 3 63 0 2 1318 680 134 45 0 chr1 96183068 96183225 -101012207 + GA-rich Low_complexity Low_complexity 1 164 0 2 1318 339 353 22 8 chr1 96183234 96183351 -101012081 - PB1D10 SINE Alu 0 117 1 2 1318 2668 191 91 34 chr1 96183485 96184134 -101011298 - RMER1B Other Other -10 1056 371 2 1318 663 140 0 26 chr1 96184215 96184332 -101011100 - L1_Mur3 LINE L1 -914 4966 4853 2 1318 726 184 158 0 chr1 96184338 96184490 -101010942 - Lx7 LINE L1 -1238 6458 6283 2 1318 407 198 38 0 chr1 96184498 96184604 -101010828 - L1_Mur3 LINE L1 -977 4903 4794 2 1318 358 224 12 0 chr1 96184590 96184675 -101010757 - L1_Mur3 LINE L1 -3586 2294 2209 2 1318 1528 154 14 50 chr1 96184677 96184957 -101010475 + ORR1B1 LTR MaLR 1 270 -124 2 1318 1856 134 254 31 chr1 96184958 96185406 -101010026 - RLTR6_Mm LTR ERV1 -70 584 37 2 1318 655 69 155 10 chr1 96185520 96185623 -101009809 + ORR1B1 LTR MaLR 269 386 -8 2 1318 225 224 35 0 chr1 96185628 96185686 -101009746 - L1_Mur3 LINE L1 -3671 2209 2150 2 1318 32816 68 3 1 chr1 96185704 96191886 -101003546 - L1Md_F2 LINE L1 0 6582 390 2 1318 605 125 83 0 chr1 96191886 96192006 -101003426 - L1_Mur3 LINE L1 -3715 2165 2036 2 1318 225 108 0 0 chr1 96192070 96192107 -101003325 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1318 456 126 0 0 chr1 96192108 96192195 -101003237 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 2 1318 25 75 0 0 chr1 96192665 96192718 -101002714 + AT_rich Low_complexity Low_complexity 1 53 0 2 1318 326 198 19 47 chr1 96193988 96194028 -101001404 + (CAGAGA)n Simple_repeat Simple_repeat 6 47 0 2 1318 648 86 0 0 chr1 96194028 96194133 -101001299 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1318 375 41 0 0 chr1 96194133 96194181 -101001251 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1318 2449 171 77 8 chr1 96194186 96194680 -101000752 + RLTR11A LTR ERVK 1 528 0 2 1318 326 198 19 47 chr1 96194680 96194738 -101000694 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 2 1318 1903 156 36 6 chr1 96195147 96195476 -100999956 + RLTR17 LTR ERVK 1 339 -353 2 1318 231 304 33 0 chr1 96195528 96195620 -100999812 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1318 670 335 29 10 chr1 96195631 96195836 -100999596 - B4 SINE B4 -3 289 81 2 1318 2857 60 39 23 chr1 96196236 96196626 -100998806 - MTA_Mm LTR MaLR 0 396 1 2 1318 426 36 18 0 chr1 96196768 96196823 -100998609 - ORR1C2 LTR MaLR -328 56 1 2 1318 2228 173 33 15 chr1 96197049 96197443 -100997989 + MTC LTR MaLR 21 421 0 2 1318 235 376 88 34 chr1 96198749 96198953 -100996479 - MamGypLTR1b LTR Gypsy -9 773 559 2 1318 14865 114 122 10 chr1 96198996 96202736 -100992696 + L1_Mus3 LINE L1 2508 6638 0 2 1318 766 333 5 0 chr1 96202736 96202946 -100992486 + B4A SINE B4 82 292 0 2 1318 232 288 0 57 chr1 96202898 96202968 -100992464 + B3A SINE B2 117 182 -16 2 1318 222 91 0 0 chr1 96203451 96203484 -100991948 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1318 7440 208 53 24 chr1 96203592 96203938 -100991494 - Lx7 LINE L1 -296 7400 7034 2 1318 1864 190 93 8 chr1 96203938 96204326 -100991106 - MTC LTR MaLR 0 421 1 2 1318 7440 208 53 24 chr1 96204326 96205183 -100990249 - Lx7 LINE L1 -663 7033 6167 2 1318 887 80 0 124 chr1 96205183 96205368 -100990064 + L1_Mus3 LINE L1 6476 6637 -1 2 1318 7440 208 53 24 chr1 96205368 96205900 -100989532 - Lx7 LINE L1 -1530 6166 5613 2 1318 818 146 12 12 chr1 96205900 96206073 -100989359 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 164 16732 192 47 38 chr1 96206073 96206867 -100988565 - Lx7 LINE L1 -266 5614 4754 2 1319 180 0 0 0 chr1 96206867 96206887 -100988545 + (CATGC)n Simple_repeat Simple_repeat 2 21 0 2 1319 279 0 0 0 chr1 96206890 96206921 -100988511 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1319 16732 192 47 38 chr1 96206921 96206948 -100988484 - Lx7 LINE L1 -1127 4753 4735 2 1319 1159 48 0 7 chr1 96206948 96207094 -100988338 - B1_Mm SINE Alu -1 146 2 2 1319 16732 192 47 38 chr1 96207094 96207867 -100987565 - Lx7 LINE L1 -1146 4734 3949 2 1319 477 0 0 0 chr1 96207867 96207920 -100987512 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1319 16732 196 46 42 chr1 96207920 96211071 -100984361 - Lx7 LINE L1 -1932 3948 840 2 1319 391 320 65 0 chr1 96211419 96211619 -100983813 - Lx7 LINE L1 -6895 833 621 2 1319 6158 37 0 1 chr1 96211964 96212697 -100982735 - L1Md_F2 LINE L1 -1 6581 5850 2 1319 21 36 0 0 chr1 96213290 96213318 -100982114 + AT_rich Low_complexity Low_complexity 1 28 0 2 1319 444 19 0 0 chr1 96215191 96215244 -100980188 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1319 180 231 0 0 chr1 96215384 96215436 -100979996 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1319 263 343 61 48 chr1 96216605 96216752 -100978680 + LFSINE_Vert SINE SINE 199 347 -112 2 1319 504 260 79 63 chr1 96217143 96217332 -100978100 + B3A SINE B2 1 192 -6 2 1319 223 122 41 0 chr1 96217434 96217483 -100977949 + C-rich Low_complexity Low_complexity 2 52 0 2 1319 548 314 121 16 chr1 96217539 96217795 -100977637 + RMER15 LTR ERVL 277 559 -16 2 1319 663 277 205 11 chr1 96218074 96218337 -100977095 + MTE2b LTR MaLR 1 314 -65 2 1319 1491 238 31 98 chr1 96218425 96218872 -100976560 - MTD LTR MaLR 0 419 3 2 1319 357 24 0 0 chr1 96220023 96220065 -100975367 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1319 198 0 0 0 chr1 96220066 96220088 -100975344 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1319 252 0 0 0 chr1 96220495 96220523 -100974909 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 1319 845 148 15 7 chr1 96220528 96220664 -100974768 - B1_Mur4 SINE Alu -13 137 1 2 1319 1015 306 63 36 chr1 96220756 96221200 -100974232 + RMER15-int LTR ERVL 2195 2650 -2349 2 1319 1551 309 78 35 chr1 96221429 96222261 -100973171 + RMER15-int LTR ERVL 2910 3777 -1222 2 1319 2473 163 84 4 chr1 96222284 96222772 -100972660 - RLTR11A2 LTR ERVK 0 527 1 2 1319 1007 216 8 55 chr1 96222786 96223041 -100972391 - MYSERV-int LTR ERVK -8 6542 6300 2 1319 377 309 176 6 chr1 96223095 96223277 -100972155 - ID_B1 SINE B4 -8 216 4 2 1319 595 372 59 26 chr1 96223659 96223999 -100971433 - ORR1E LTR MaLR 0 359 9 3 1319 305 259 200 0 chr1 96224907 96224992 -100970440 + PB1D10 SINE Alu 5 106 -11 3 1319 2792 280 31 11 chr1 96224998 96225783 -100969649 + Lx7 LINE L1 6508 7307 -389 3 1319 1083 279 20 4 chr1 96225930 96226185 -100969247 - Lx6 LINE L1 -151 7309 7051 3 1319 2243 80 3 65 chr1 96226242 96226578 -100968854 - ORR1A2 LTR MaLR 0 327 13 3 1319 387 0 0 0 chr1 96227253 96227296 -100968136 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1319 6563 78 33 6 chr1 96227313 96228217 -100967215 + RLTR13B3 LTR ERVK 1 929 0 3 1319 3037 150 214 19 chr1 96228843 96229460 -100965972 + RMER19A LTR ERVK 1 737 0 3 1319 3167 142 65 2 chr1 96229594 96230130 -100965302 + RMER4B LTR ERVK 16 585 0 3 1319 6186 153 74 78 chr1 96230733 96231641 -100963791 + RLTR21 LTR ERVK 1 899 -673 3 1319 1126 62 0 0 chr1 96231641 96231787 -100963645 - B1_Mus2 SINE Alu 0 147 2 3 1319 6186 153 74 78 chr1 96231787 96232192 -100963240 + RLTR21 LTR ERVK 900 1308 -264 3 1319 389 228 0 17 chr1 96232192 96232308 -100963124 + (TATATG)n Simple_repeat Simple_repeat 6 119 0 3 1319 3120 164 36 26 chr1 96232328 96232915 -100962517 + RLTR17 LTR ERVK 98 690 -2 3 1319 243 0 0 0 chr1 96232915 96232942 -100962490 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1319 1734 175 92 101 chr1 96232942 96233399 -100962033 + RLTR21 LTR ERVK 1120 1572 0 3 1319 258 32 0 0 chr1 96233478 96233509 -100961923 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1319 1745 105 12 8 chr1 96233730 96233989 -100961443 + Lx2 LINE L1 6392 6651 -346 3 1319 1353 173 68 8 chr1 96233975 96234225 -100961207 + Lx2 LINE L1 6386 6650 -4 3 1319 252 123 29 58 chr1 96234602 96234671 -100960761 + CT-rich Low_complexity Low_complexity 3 69 0 3 1319 28 61 0 0 chr1 96234859 96234908 -100960524 + AT_rich Low_complexity Low_complexity 1 49 0 3 1319 23 33 0 0 chr1 96235013 96235043 -100960389 + AT_rich Low_complexity Low_complexity 1 30 0 3 1319 4998 75 11 1 chr1 96235157 96235824 -100959608 - L1_Mus3 LINE L1 -7 6631 5959 3 1319 210 373 13 0 chr1 96236882 96236957 -100958475 + L2a LINE L2 3335 3410 -16 3 1319 231 232 0 0 chr1 96237323 96237379 -100958053 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1319 575 108 11 0 chr1 96237383 96237476 -100957956 + (CA)n Simple_repeat Simple_repeat 1 94 0 3 1319 5312 180 89 20 chr1 96237765 96238761 -100956671 - RMER1B Other Other 0 1066 2 3 1319 1242 108 0 38 chr1 96239038 96239091 -100956341 - L1_Mus4 LINE L1 -2 6634 6588 3 1319 2702 88 54 5 chr1 96239091 96239481 -100955951 - RLTR9E LTR ERVK 0 409 1 3 1319 1242 108 0 38 chr1 96239481 96239639 -100955793 - L1_Mus4 LINE L1 -49 6587 6431 3 1319 2092 47 0 0 chr1 96239640 96239896 -100955536 + L1_Mus4 LINE L1 5628 5883 -753 3 1319 279 0 0 0 chr1 96240514 96240545 -100954887 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1319 414 152 11 21 chr1 96240621 96240715 -100954717 + CT-rich Low_complexity Low_complexity 4 96 0 3 1319 3352 126 40 9 chr1 96240732 96241275 -100954157 - Lx3C LINE L1 -2 6974 6415 3 1319 2879 124 21 61 chr1 96241275 96241799 -100953633 + Lx3C LINE L1 5901 6403 -573 3 1319 34201 70 4 36 chr1 96242715 96249052 -100946380 - L1Md_F3 LINE L1 0 6584 461 3 1319 687 261 24 12 chr1 96249042 96249209 -100946223 - Lx9 LINE L1 -377 7267 7099 3 1319 426 39 0 0 chr1 96249234 96249286 -100946146 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1319 629 193 0 7 chr1 96249472 96249608 -100945824 + CT-rich Low_complexity Low_complexity 4 138 0 3 1319 229 279 75 28 chr1 96250019 96250126 -100945306 - L1MA6 LINE L1 -35 6265 6154 3 1319 299 312 30 77 chr1 96250196 96250393 -100945039 - MIR3 SINE MIR -76 186 1 3 1319 229 238 0 91 chr1 96250950 96250980 -100944452 - Lx8 LINE L1 -130 7343 7321 3 1319 459 0 0 0 chr1 96250980 96251031 -100944401 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1319 229 238 0 91 chr1 96251031 96251088 -100944344 - Lx8 LINE L1 -153 7320 7264 3 1319 21 0 0 0 chr1 96252557 96252578 -100942854 + AT_rich Low_complexity Low_complexity 1 21 0 3 1319 3180 163 138 7 chr1 96253270 96253880 -100941552 - RLTR17 LTR ERVK 0 692 3 3 1319 304 346 9 0 chr1 96254168 96254275 -100941157 + Lx8 LINE L1 7167 7274 -199 3 1319 25 65 0 0 chr1 96254311 96254357 -100941075 + AT_rich Low_complexity Low_complexity 1 46 0 3 1319 24 0 0 0 chr1 96254510 96254534 -100940898 + AT_rich Low_complexity Low_complexity 1 24 0 3 1319 621 320 41 81 chr1 96255064 96255458 -100939974 - MLT2C1 LTR ERVL -7 390 13 3 1319 567 237 59 71 chr1 96255865 96256061 -100939371 + B3A SINE B2 6 198 0 3 1319 3103 197 122 32 chr1 96256065 96256910 -100938522 - Lx9 LINE L1 -551 7093 6173 3 1319 1056 220 37 47 chr1 96256908 96257208 -100938224 + Lx9 LINE L1 7341 7637 -7 3 1319 590 197 26 7 chr1 96257600 96257753 -100937679 - Lx9 LINE L1 -7 7637 7482 3 1319 3224 215 46 7 chr1 96257833 96258578 -100936854 - Lx9 LINE L1 -139 7505 6732 3 1319 22 35 0 0 chr1 96259554 96259583 -100935849 + AT_rich Low_complexity Low_complexity 1 29 0 3 1319 2517 67 0 9 chr1 96259614 96259944 -100935488 - L1_Mus1 LINE L1 -1 6566 6240 3 1319 1111 272 62 7 chr1 96261111 96261403 -100934029 - ORR1D2 LTR MaLR -62 308 1 3 1319 1573 210 75 9 chr1 96262987 96263319 -100932113 + ORR1B2 LTR MaLR 6 359 -8 3 1319 597 229 158 88 chr1 96263481 96263529 -100931903 - RMER20B LTR ERVK -214 413 349 3 1319 315 0 0 0 chr1 96263529 96263564 -100931868 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1319 597 229 158 88 chr1 96263564 96263812 -100931620 - RMER20B LTR ERVK -279 348 97 3 1319 421 303 109 54 chr1 96264180 96264405 -100931027 + MLT1C LTR MaLR 1 228 -162 3 1319 302 360 0 10 chr1 96264452 96264553 -100930879 + B4A SINE B4 189 288 -4 3 1319 495 0 0 0 chr1 96264631 96264686 -100930746 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1319 634 224 64 0 chr1 96264715 96264837 -100930595 + B4A SINE B4 105 234 -58 3 1319 1149 306 28 84 chr1 96264837 96265230 -100930202 + MTE2b LTR MaLR 1 371 -8 3 1319 249 200 80 0 chr1 96265222 96265272 -100930160 + B4A SINE B4 217 270 -22 3 1319 788 174 21 7 chr1 96266544 96266689 -100928743 + B1_Mur3 SINE Alu 1 147 -2 3 1319 387 87 43 0 chr1 96266855 96266924 -100928508 - L1_Mur2 LINE L1 -1235 4642 4571 3 1319 13212 151 53 15 chr1 96266921 96269306 -100926126 - Lx2 LINE L1 -103 5774 3299 3 1319 5933 126 5 1 chr1 96269305 96270187 -100925245 + Lx2 LINE L1 5791 6675 -322 3 1319 6469 119 36 18 chr1 96270186 96270470 -100924962 - L1_Mur2 LINE L1 -1312 4565 4280 3 1319 207 0 0 0 chr1 96270470 96270493 -100924939 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1319 6469 119 36 18 chr1 96270493 96271311 -100924121 - L1_Mur2 LINE L1 -1598 4279 3444 3 1319 5934 154 69 18 chr1 96271308 96272441 -100922991 + L1_Mur2 LINE L1 4652 5842 -35 3 1319 3293 218 47 12 chr1 96272438 96273101 -100922331 + Lx5 LINE L1 6365 7050 0 3 1319 572 175 0 8 chr1 96273667 96273794 -100921638 + (CA)n Simple_repeat Simple_repeat 2 127 0 3 1319 1248 38 0 0 chr1 96273873 96274031 -100921401 + L1Md_A LINE L1 6425 6582 0 3 1319 180 301 96 89 chr1 96274229 96274386 -100921046 + MIRb SINE MIR 73 230 -38 3 1319 255 312 31 0 chr1 96274718 96274782 -100920650 + B1F SINE Alu 68 133 -16 3 1319 1296 36 12 0 chr1 96275036 96275202 -100920230 + L1Md_A LINE L1 6415 6582 0 3 1319 635 340 78 7 chr1 96275552 96275860 -100919572 + MLT1F2 LTR MaLR 231 560 0 3 1319 1100 60 0 0 chr1 96276108 96276242 -100919190 + B1_Mus2 SINE Alu 2 135 -12 3 1319 21 71 0 0 chr1 96276648 96276690 -100918742 + AT_rich Low_complexity Low_complexity 1 42 0 3 1319 189 107 0 0 chr1 96278036 96278064 -100917368 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1319 2519 122 8 2 chr1 96278097 96278493 -100916939 - Lx LINE L1 -4 6650 6253 3 1319 469 211 8 38 chr1 96278810 96278943 -100916489 - Lx9 LINE L1 -1 7643 7515 3 1319 204 40 0 0 chr1 96278943 96278968 -100916464 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 3 1319 747 208 26 0 chr1 96278969 96279123 -100916309 - Lx9 LINE L1 -168 7476 7319 3 1319 658 177 137 0 chr1 96279140 96279264 -100916168 - Lx9 LINE L1 -385 7259 7119 3 1319 1177 185 41 26 chr1 96279265 96279605 -100915827 + RLTR24 LTR ERV1 6 419 -110 3 1319 662 120 83 25 chr1 96279577 96279697 -100915735 + B1_Mur4 SINE Alu 22 148 -2 3 1319 1019 152 0 30 chr1 96279733 96279902 -100915530 + RLTR24 LTR ERV1 363 526 -3 3 1319 418 209 12 0 chr1 96279906 96279992 -100915440 - Lx9 LINE L1 -543 7101 7015 3 1319 6911 50 9 0 chr1 96280250 96281098 -100914334 - L1_Mus1 LINE L1 -4 6563 5708 3 1319 288 210 110 12 chr1 96281098 96281180 -100914252 - RMER4B LTR ERVK -31 554 465 3 1319 926 206 214 44 chr1 96281193 96281534 -100913898 - RMER4B LTR ERVK -170 415 17 3 1319 3150 273 33 40 chr1 96281535 96282439 -100912993 - Lx8 LINE L1 -197 7276 6379 3 1319 25 0 0 0 chr1 96282583 96282608 -100912824 + AT_rich Low_complexity Low_complexity 1 25 0 3 1319 582 286 105 19 chr1 96284005 96284272 -100911160 + Lx8 LINE L1 7182 7471 -2 3 1319 41024 6 0 0 chr1 96284689 96291265 -100904167 - L1Md_A LINE L1 0 6582 7 3 1319 647 212 13 40 chr1 96292360 96292512 -100902920 - B1_Mur3 SINE Alu -1 148 1 3 1319 328 188 75 0 chr1 96293355 96293435 -100901997 - Lx9 LINE L1 -794 6850 6765 3 1319 6754 167 53 64 chr1 96293453 96295004 -100900428 + L1_Mur3 LINE L1 4054 5587 -293 3 1319 618 246 61 16 chr1 96295703 96295998 -100899434 + L1M2 LINE L1 5467 5782 -518 3 1319 38085 11 0 7 chr1 96296002 96301209 -100894223 + L1Md_A LINE L1 422 5586 -297 3 1319 8795 16 0 0 chr1 96301209 96302205 -100893227 + L1Md_A LINE L1 5587 6582 0 3 1319 1695 283 92 30 chr1 96302205 96302819 -100892613 + L1MA7 LINE L1 5616 6291 0 3 1319 2481 50 9 21 chr1 96303517 96303845 -100891587 - L1Md_F2 LINE L1 0 6582 6259 3 1319 4613 123 13 9 chr1 96303861 96305203 -100890229 - L1Md_A LINE L1 -4107 1776 446 3 1319 1005 240 222 59 chr1 96305728 96306202 -100889230 - RLTR20C LTR ERVK 0 551 1 3 1319 228 290 0 16 chr1 96306202 96306265 -100889167 + GA-rich Low_complexity Low_complexity 3 64 0 3 1319 7103 129 6 7 chr1 96306281 96308028 -100887404 + Lx LINE L1 4909 6652 -2 3 1319 333 0 0 0 chr1 96308033 96308070 -100887362 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 1319 21 57 0 0 chr1 96310004 96310039 -100885393 + AT_rich Low_complexity Low_complexity 1 35 0 3 1319 2062 123 0 74 chr1 96310839 96311191 -100884241 - ORR1A3 LTR MaLR 0 326 1 4 1319 216 91 0 0 chr1 96311366 96311390 -100884042 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1319 1238 41 0 0 chr1 96311390 96311537 -100883895 - B1_Mus2 SINE Alu 0 147 1 4 1319 216 91 0 0 chr1 96311537 96311545 -100883887 + (T)n Simple_repeat Simple_repeat 1 8 0 4 1319 342 0 0 0 chr1 96312022 96312060 -100883372 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1319 201 221 13 25 chr1 96312197 96312276 -100883156 + A-rich Low_complexity Low_complexity 4 81 0 4 1319 375 175 63 2 chr1 96313010 96313108 -100882324 - L1Md_F2 LINE L1 -479 5854 5720 4 1319 2751 167 71 17 chr1 96313224 96313748 -100881684 - RMER19B LTR ERVK -12 890 339 4 1319 949 231 2 44 chr1 96313777 96314047 -100881385 - RMER19B LTR ERVK -683 219 1 4 1319 325 303 82 46 chr1 96315043 96315237 -100880195 + Charlie25 DNA MER1_type 343 543 -1981 4 1319 37 39 0 0 chr1 96315446 96315497 -100879935 + AT_rich Low_complexity Low_complexity 1 51 0 4 1319 5378 124 51 87 chr1 96315561 96316348 -100879084 + L1VL4 LINE L1 1 745 -5557 4 1319 4713 45 10 2 chr1 96316348 96316928 -100878504 + L1Md_F2 LINE L1 5996 6580 -2 4 1319 12889 83 32 17 chr1 96316928 96318983 -100876449 + L1VL4 LINE L1 746 2831 -728 4 1319 492 18 0 0 chr1 96318990 96319047 -100876385 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 4 1319 481 296 182 57 chr1 96319047 96319351 -100876081 + MTB_Mm LTR MaLR 13 354 -53 4 1319 396 0 0 0 chr1 96319351 96319395 -100876037 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1319 665 286 39 44 chr1 96319395 96319726 -100875706 + MTD LTR MaLR 7 405 -14 4 1319 1311 259 84 14 chr1 96320123 96320468 -100874964 - Lx9 LINE L1 -843 6801 6433 4 1319 2473 248 52 0 chr1 96320467 96321027 -100874405 - Lx7 LINE L1 -594 7102 6514 4 1319 387 0 0 0 chr1 96321045 96321088 -100874344 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 4 1319 260 279 73 26 chr1 96321311 96321462 -100873970 + L1_Rod LINE L1 552 709 -6463 4 1319 2950 301 123 47 chr1 96322016 96324130 -100871302 + Lx8 LINE L1 3033 5341 -539 4 1319 1459 186 188 100 chr1 96324130 96324620 -100870812 + MT2A LTR ERVL 1 533 0 4 1319 2950 301 123 47 chr1 96324620 96325123 -100870309 + Lx8 LINE L1 5342 5851 -29 4 1319 1538 304 152 54 chr1 96325407 96325980 -100869452 + Lx8 LINE L1 6193 6776 -697 4 1319 1789 24 0 0 chr1 96325980 96326192 -100869240 + L1Md_A LINE L1 6369 6580 -2 4 1319 1538 304 152 54 chr1 96326192 96326613 -100868819 + Lx8 LINE L1 6777 7284 -189 4 1319 234 0 0 0 chr1 96326694 96326720 -100868712 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1319 443 0 60 0 chr1 96326720 96326787 -100868645 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1319 1285 137 8 106 chr1 96327118 96327363 -100868069 + URR1A DNA MER1_type 6 226 0 4 1319 496 229 52 94 chr1 96327363 96327426 -100868006 - CYRA11_Mm Unknown Y-chromosome -445 172 119 4 1319 932 161 199 6 chr1 96327722 96327903 -100867529 + B3 SINE B2 1 216 0 4 1319 204 319 119 36 chr1 96328414 96328586 -100866846 + MIR SINE MIR 43 227 -35 4 1319 213 39 0 0 chr1 96328663 96328689 -100866743 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1319 1501 176 121 12 chr1 96329070 96329393 -100866039 + RMER19B LTR ERVK 307 664 -238 4 1319 3337 108 22 0 chr1 96329401 96329918 -100865514 - Lx2A1 LINE L1 -1081 5927 5401 4 1319 5095 89 1 4 chr1 96329918 96330614 -100864818 + L1_Mus1 LINE L1 5874 6567 0 4 1319 708 192 13 27 chr1 96330620 96330770 -100864662 + RMER19C LTR ERVK 453 600 -11 4 1319 6037 44 4 9 chr1 96330771 96331531 -100863901 - L1Md_F2 LINE L1 -13 6569 5814 4 1319 241 284 146 10 chr1 96331855 96331958 -100863474 - MLT1F2 LTR MaLR 0 548 432 4 1319 451 155 29 10 chr1 96332050 96332154 -100863278 - Lx9 LINE L1 -22 7622 7517 4 1319 350 42 21 0 chr1 96332157 96332205 -100863227 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1319 749 206 304 7 chr1 96332209 96332492 -100862940 - Lx9 LINE L1 -171 7473 7107 4 1319 353 300 42 0 chr1 96332641 96332761 -100862671 - MLT1F2 LTR MaLR -375 185 61 4 1319 203 32 65 0 chr1 96332798 96332829 -100862603 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 4 1319 877 351 51 29 chr1 96333393 96333525 -100861907 + Lx7 LINE L1 6808 6947 -749 4 1319 2557 77 6 0 chr1 96333525 96333850 -100861582 + ORR1A2 LTR MaLR 1 327 0 4 1319 877 351 51 29 chr1 96333850 96334171 -100861261 + Lx7 LINE L1 6948 7271 -425 4 1319 381 187 0 0 chr1 96334222 96334297 -100861135 + CT-rich Low_complexity Low_complexity 1 75 0 4 1319 239 322 24 87 chr1 96334297 96334423 -100861009 + RMER1C Other Other 1198 1315 -27 4 1319 705 54 0 9 chr1 96334451 96334563 -100860869 + L1Md_F3 LINE L1 6472 6582 -2 4 1319 27 0 0 0 chr1 96336161 96336188 -100859244 + AT_rich Low_complexity Low_complexity 1 27 0 4 1319 21 0 0 0 chr1 96336301 96336322 -100859110 + AT_rich Low_complexity Low_complexity 1 21 0 4 1320 407 260 0 0 chr1 96338250 96338327 -100857105 - ID_B1 SINE B4 -63 161 85 4 1320 225 94 0 0 chr1 96338982 96339014 -100856418 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1320 258 231 140 55 chr1 96339022 96339275 -100856157 - L1P5 LINE L1 -327 5797 5529 4 1320 531 189 62 23 chr1 96339309 96339439 -100855993 - ID_B1 SINE B4 0 224 90 4 1320 585 320 75 41 chr1 96340100 96340488 -100854944 - L1MA4 LINE L1 -362 5938 5538 4 1320 879 118 0 0 chr1 96340537 96340672 -100854760 + (TTC)n Simple_repeat Simple_repeat 1 135 0 4 1320 194 208 19 0 chr1 96340672 96340725 -100854707 + CT-rich Low_complexity Low_complexity 2 55 0 4 1320 836 247 37 5 chr1 96340734 96340925 -100854507 - B3 SINE B2 -4 212 16 4 1320 2374 298 102 31 chr1 96340959 96342651 -100852781 - L1MA4 LINE L1 -808 5489 3670 4 1320 1797 251 70 18 chr1 96344743 96345363 -100850069 + Lx6 LINE L1 5793 6712 -984 4 1320 627 312 5 42 chr1 96345907 96346124 -100849308 + ID_B1 SINE B4 3 211 -13 4 1320 333 47 0 0 chr1 96346334 96346377 -100849055 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1320 782 228 7 0 chr1 96346378 96346514 -100848918 - RSINE1 SINE B4 -26 139 3 4 1320 4392 48 0 0 chr1 96347507 96348033 -100847399 - L1Md_F2 LINE L1 -310 6272 5747 4 1320 2087 88 0 20 chr1 96348033 96348334 -100847098 + L1Md_F2 LINE L1 6275 6569 -13 4 1320 306 0 0 0 chr1 96349084 96349118 -100846314 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1320 1052 92 7 0 chr1 96349630 96349772 -100845660 - B1_Mus1 SINE Alu -5 143 1 4 1320 12658 212 97 54 chr1 96349783 96353115 -100842317 - Lx7 LINE L1 -5 7691 4207 4 1320 1123 179 235 19 chr1 96353115 96353439 -100841993 + ORR1B1 LTR MaLR 1 394 0 4 1320 12658 191 75 28 chr1 96353439 96354220 -100841212 - Lx7 LINE L1 -1674 4206 3405 4 1320 189 0 0 0 chr1 96354220 96354241 -100841191 + (CATTT)n Simple_repeat Simple_repeat 5 25 0 4 1320 12658 191 75 28 chr1 96354241 96354271 -100841161 - Lx7 LINE L1 -2476 3404 3377 4 1320 342 45 0 0 chr1 96354271 96354315 -100841117 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1320 12658 191 75 28 chr1 96354315 96355069 -100840363 - Lx7 LINE L1 -2504 3376 2604 4 1320 948 117 0 79 chr1 96355066 96355230 -100840202 + L1_Mur2 LINE L1 3264 3417 -2460 4 1320 3013 77 10 5 chr1 96355230 96355646 -100839786 + L1_Mus1 LINE L1 6149 6566 -1 4 1320 948 117 0 79 chr1 96355646 96355658 -100839774 + L1_Mur2 LINE L1 3418 3426 -2451 4 1320 2652 124 26 2 chr1 96355664 96356093 -100839339 + L1_Mur2 LINE L1 4354 4792 -1085 4 1320 4076 214 99 33 chr1 96356093 96356715 -100838717 - Lx7 LINE L1 -3279 2601 1916 4 1320 197 33 0 32 chr1 96356715 96356746 -100838686 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1320 4076 230 88 33 chr1 96356746 96357773 -100837659 - Lx7 LINE L1 -3965 1915 844 4 1320 485 278 0 8 chr1 96358102 96358236 -100837196 - Lx7 LINE L1 -6883 845 713 4 1320 3519 182 73 19 chr1 96358267 96358991 -100836441 - RMER19B LTR ERVK -6 896 134 4 1320 478 282 35 14 chr1 96359033 96359177 -100836255 - B1F SINE Alu 0 149 3 4 1320 3111 63 8 2 chr1 96360205 96360601 -100834831 - MTB LTR MaLR 0 400 3 4 1320 220 212 12 59 chr1 96360626 96360711 -100834721 + A-rich Low_complexity Low_complexity 4 84 0 4 1320 332 198 25 25 chr1 96361006 96361125 -100834307 - L1MA9 LINE L1 0 6312 6194 4 1320 284 318 8 30 chr1 96361218 96361351 -100834081 - ERVL-int LTR ERVL -174 5583 5454 4 1320 284 189 0 19 chr1 96361341 96361395 -100834037 - ERVL-int LTR ERVL -371 5296 5244 4 1320 261 290 14 0 chr1 96361603 96361672 -100833760 + MLT2D LTR ERVL 118 187 -227 4 1320 769 296 234 5 chr1 96362150 96362517 -100832915 - Lx8 LINE L1 -198 7275 6825 4 1320 1060 226 256 3 chr1 96362849 96363154 -100832278 + RLTR14 LTR ERV1 1 382 0 4 1320 950 290 100 11 chr1 96366889 96367225 -100828207 + MTD LTR MaLR 1 405 -14 4 1320 351 44 0 0 chr1 96367322 96367367 -100828065 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1320 547 280 24 54 chr1 96367373 96367539 -100827893 - B3A SINE B2 -37 161 1 4 1320 2688 103 54 10 chr1 96367555 96367965 -100827467 + L1Md_F2 LINE L1 6153 6580 -2 4 1320 1143 311 46 23 chr1 96368094 96368628 -100826804 - Lx8 LINE L1 -394 7079 6501 4 1320 2554 267 27 20 chr1 96368725 96369291 -100826141 - L1_Mur3 LINE L1 -697 5183 4623 4 1320 1806 202 15 51 chr1 96369291 96369683 -100825749 - ORR1C1 LTR MaLR 0 378 1 4 1320 2554 267 27 20 chr1 96369683 96369904 -100825528 - L1_Mur3 LINE L1 -1258 4622 4391 4 1320 301 114 65 54 chr1 96369928 96370021 -100825411 - Lx9 LINE L1 -1 7643 7550 4 1320 3133 267 59 11 chr1 96370041 96371071 -100824361 - Lx9 LINE L1 -580 7064 5854 4 1320 1121 182 4 26 chr1 96371056 96371282 -100824150 + L1_Rod LINE L1 5612 5832 -15 4 1320 410 246 0 28 chr1 96371283 96371425 -100824007 - L1_Mur3 LINE L1 -1510 4370 4233 4 1320 41046 3 0 3 chr1 96371768 96376017 -100819415 - L1Md_A LINE L1 0 6582 2351 4 1320 2204 4 4 0 chr1 96376017 96376267 -100819165 - L1Md_A LINE L1 0 6582 6332 4 1320 41046 11 1 3 chr1 96376267 96378802 -100816630 - L1Md_A LINE L1 -3533 2350 1 4 1320 304 118 0 0 chr1 96378871 96378922 -100816510 + Lx3A LINE L1 6927 6977 -4 4 1320 621 278 45 50 chr1 96379208 96379450 -100815982 + B4A SINE B4 52 292 0 4 1320 372 43 0 0 chr1 96379456 96379502 -100815930 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1320 504 0 0 0 chr1 96379502 96379557 -100815875 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1320 297 0 0 0 chr1 96379748 96379781 -100815651 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1320 516 285 118 20 chr1 96380341 96380738 -100814694 - L1MA5 LINE L1 0 6300 5865 4 1320 5520 235 72 21 chr1 96380778 96380889 -100814543 - Lx7 LINE L1 -16 7680 7572 4 1320 272 70 23 0 chr1 96380889 96380932 -100814500 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 4 1320 5520 235 72 21 chr1 96380932 96381070 -100814362 - Lx7 LINE L1 -125 7571 7416 4 1320 183 129 0 0 chr1 96381070 96381101 -100814331 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1320 5520 235 72 21 chr1 96381101 96382305 -100813127 - Lx7 LINE L1 -281 7415 6152 4 1320 547 318 23 29 chr1 96382483 96382658 -100812774 + ID_B1 SINE B4 51 224 0 4 1320 462 157 0 0 chr1 96382658 96382741 -100812691 + GA-rich Low_complexity Low_complexity 1 83 0 4 1320 363 323 29 30 chr1 96383277 96383638 -100811794 - L1MEg LINE L1 -4283 2566 2144 5 1320 189 0 0 0 chr1 96384724 96384745 -100810687 + (CCA)n Simple_repeat Simple_repeat 2 22 0 5 1320 890 93 40 0 chr1 96385369 96385519 -100809913 + L1_Mus3 LINE L1 6482 6637 -1 5 1320 2135 294 114 66 chr1 96385653 96386084 -100809348 - Lx5 LINE L1 -18 7032 6603 5 1320 474 18 0 0 chr1 96386084 96386139 -100809293 + (TCC)n Simple_repeat Simple_repeat 2 56 0 5 1320 2135 294 114 66 chr1 96386139 96386792 -100808640 - Lx5 LINE L1 -448 6602 5896 5 1320 2903 178 93 25 chr1 96386794 96386920 -100808512 + Lx5 LINE L1 5167 5287 -593 5 1320 6144 78 41 6 chr1 96386920 96387780 -100807652 + L1_Mus3 LINE L1 5742 6631 -7 5 1320 2903 155 92 15 chr1 96387780 96388370 -100807062 + Lx5 LINE L1 5288 5933 -1117 5 1320 405 72 0 67 chr1 96388673 96388733 -100806699 + L1VL2 LINE L1 276 331 -6004 5 1320 5879 71 24 24 chr1 96388730 96389676 -100805756 + L1VL2 LINE L1 881 1826 -1789 5 1320 309 263 0 0 chr1 96389820 96389896 -100805536 - PB1D10 SINE Alu -2 115 40 5 1320 401 294 53 22 chr1 96390684 96390910 -100804522 - L1M4 LINE L1 -3591 3050 2818 5 1320 2865 116 60 67 chr1 96390999 96391536 -100803896 - Lx2 LINE L1 -1 6996 6464 5 1320 394 333 70 70 chr1 96391883 96392267 -100803165 - L1M4 LINE L1 -6114 428 45 5 1320 1218 269 124 9 chr1 96393452 96394135 -100801297 + L1_Mur3 LINE L1 519 1280 -6448 5 1320 9713 198 32 19 chr1 96394133 96395164 -100800268 + L1_Mur3 LINE L1 2816 3851 -2029 5 1320 339 113 0 0 chr1 96395164 96395217 -100800215 + (CAG)n Simple_repeat Simple_repeat 1 53 0 5 1320 9713 198 32 19 chr1 96395217 96396388 -100799044 + L1_Mur3 LINE L1 3852 5045 -835 5 1320 3348 205 75 43 chr1 96396393 96397256 -100798176 + Lx7 LINE L1 6798 7688 -8 5 1320 276 222 0 16 chr1 96397751 96397815 -100797617 - ID_B1 SINE B4 0 224 162 5 1320 1096 270 67 10 chr1 96397816 96398202 -100797230 + L1MB1 LINE L1 5714 6121 -68 5 1320 324 0 0 0 chr1 96398237 96398273 -100797159 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1320 409 368 18 0 chr1 96398278 96398392 -100797040 + RSINE1 SINE B4 39 154 -11 5 1320 189 175 0 0 chr1 96398425 96398465 -100796967 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1320 701 107 47 0 chr1 96399858 96400007 -100795425 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 5 1320 525 325 49 4 chr1 96401557 96401804 -100793628 + L1M4 LINE L1 5550 5807 -377 5 1320 3139 71 0 0 chr1 96401852 96402261 -100793171 - L1Md_T LINE L1 0 6582 6174 5 1320 6848 25 0 2 chr1 96402261 96403089 -100792343 + L1_Mm LINE L1 2873 3698 -2185 5 1320 1560 201 84 11 chr1 96403190 96403548 -100791884 - ORR1C2 LTR MaLR 0 384 1 5 1320 1608 119 23 0 chr1 96403551 96403811 -100791621 + L1MA9 LINE L1 3833 4098 -1782 5 1320 392 166 41 52 chr1 96403812 96403914 -100791518 + L1MA9 LINE L1 4682 4817 -1323 5 1320 364 316 63 63 chr1 96403895 96404129 -100791303 + L1MA9 LINE L1 5572 5794 -518 5 1320 240 59 0 0 chr1 96404129 96404163 -100791269 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1320 364 316 63 63 chr1 96404163 96404259 -100791173 + L1MA9 LINE L1 5795 5902 -410 5 1320 343 292 177 49 chr1 96404378 96404644 -100790788 + RMER13A LTR ERVK 87 386 -474 5 1320 995 100 0 7 chr1 96405778 96405929 -100789503 + (TTCTC)n Simple_repeat Simple_repeat 4 153 0 5 1320 717 278 54 34 chr1 96406406 96406611 -100788821 - B3 SINE B2 -7 209 1 5 1320 4727 129 37 14 chr1 96407001 96407793 -100787639 + RLTR22_Mur LTR ERVK 1 810 -1038 5 1320 1532 113 12 32 chr1 96407976 96408223 -100787209 + RLTR22_Mur LTR ERVK 1605 1846 -2 5 1320 307 368 38 0 chr1 96408230 96408336 -100787096 + B1F2 SINE Alu 19 128 -21 5 1320 22 56 0 0 chr1 96408633 96408669 -100786763 + AT_rich Low_complexity Low_complexity 1 36 0 5 1320 289 304 0 73 chr1 96408816 96408940 -100786492 - Lx8 LINE L1 -102 7371 7257 5 1320 279 0 0 0 chr1 96409018 96409049 -100786383 + (CATA)n Simple_repeat Simple_repeat 1 31 0 5 1320 1279 309 48 21 chr1 96409063 96409437 -100785995 - L1MA4 LINE L1 -364 5936 5553 5 1320 3125 56 15 2 chr1 96409437 96409832 -100785600 + MTB LTR MaLR 1 400 0 5 1320 1279 315 63 30 chr1 96409832 96410157 -100785275 - L1MA4 LINE L1 -748 5552 5144 5 1320 306 0 0 0 chr1 96410157 96410191 -100785241 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1320 5028 68 4 52 chr1 96410198 96410931 -100784501 - L1_Mus2 LINE L1 0 6566 5869 5 1320 1004 317 69 52 chr1 96410931 96411764 -100783668 - L1MA4 LINE L1 -748 5138 4292 5 1320 12984 119 9 27 chr1 96411803 96414481 -100780951 + L1Md_F LINE L1 467 3107 -2776 5 1320 278 325 11 88 chr1 96414569 96414660 -100780772 - PB1D7 SINE Alu -43 84 1 5 1320 232 273 71 0 chr1 96415753 96415852 -100779580 + L1MA6 LINE L1 6038 6143 -157 5 1320 2651 220 104 9 chr1 96415876 96416202 -100779230 + L1_Mur3 LINE L1 1636 1968 -3912 5 1320 297 0 0 0 chr1 96416202 96416235 -100779197 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1320 2651 220 104 9 chr1 96416235 96416767 -100778665 + L1_Mur3 LINE L1 1969 2574 -3306 5 1320 1201 48 7 0 chr1 96416767 96416913 -100778519 + B1_Mm SINE Alu 1 147 0 5 1320 196 137 0 38 chr1 96416924 96416977 -100778455 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1320 180 0 0 0 chr1 96417213 96417233 -100778199 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1320 324 0 0 0 chr1 96417233 96417268 -100778164 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1320 351 0 0 0 chr1 96417268 96417306 -100778126 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1320 337 231 18 46 chr1 96417308 96417417 -100778015 + Lx7 LINE L1 7591 7696 0 5 1320 455 338 38 31 chr1 96417623 96417782 -100777650 - RSINE1 SINE B4 -2 163 4 5 1320 417 39 0 0 chr1 96417854 96417905 -100777527 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 1320 664 285 6 17 chr1 96417924 96418099 -100777333 - B3A SINE B2 -24 174 2 5 1320 353 270 69 10 chr1 96418157 96418258 -100777174 + PB1D7 SINE Alu 7 113 -7 5 1320 21 71 0 0 chr1 96418508 96418550 -100776882 + AT_rich Low_complexity Low_complexity 1 42 0 5 1320 1298 45 11 0 chr1 96419033 96419209 -100776223 - L1Md_F3 LINE L1 0 6584 6407 5 1320 1645 29 126 0 chr1 96419211 96419418 -100776014 - L1Md_F3 LINE L1 -396 6188 5956 5 1320 489 61 0 0 chr1 96419417 96419483 -100775949 + L1Md_F3 LINE L1 5907 5972 -612 5 1320 914 136 6 22 chr1 96420956 96421137 -100774295 + CT-rich Low_complexity Low_complexity 3 180 0 5 1320 485 32 16 0 chr1 96421142 96421205 -100774227 + (TTCTC)n Simple_repeat Simple_repeat 3 66 0 5 1320 1204 131 14 9 chr1 96421205 96421420 -100774012 - Lx LINE L1 -1 6653 6438 5 1320 523 327 108 67 chr1 96422209 96422478 -100772954 + B4A SINE B4 1 280 -12 5 1320 917 295 94 9 chr1 96422646 96422985 -100772447 + MTEb LTR MaLR 8 375 -4 5 1320 342 127 0 0 chr1 96423444 96423515 -100771917 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1320 225 0 0 0 chr1 96423515 96423540 -100771892 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1320 415 319 63 16 chr1 96423544 96423796 -100771636 - L1M2 LINE L1 -549 5763 5500 5 1320 2111 287 109 47 chr1 96423870 96424923 -100770509 - Lx9 LINE L1 -20 7624 6506 5 1320 769 307 122 49 chr1 96425399 96425854 -100769578 + L1M2 LINE L1 4229 4725 -1418 5 1320 4666 22 0 0 chr1 96425854 96426390 -100769042 - L1Md_A LINE L1 0 6582 6047 5 1320 769 307 122 49 chr1 96426390 96426853 -100768579 + L1M2 LINE L1 4726 5214 -929 5 1320 1151 288 37 6 chr1 96427019 96427340 -100768092 - Lx8 LINE L1 -363 7110 6780 5 1320 400 303 20 0 chr1 96427717 96427869 -100767563 - L1MC5 LINE L1 -795 7166 7012 5 1320 25 90 0 0 chr1 96427915 96427982 -100767450 + AT_rich Low_complexity Low_complexity 1 67 0 5 1320 3892 193 39 12 chr1 96428216 96429046 -100766386 - Lx2B LINE L1 0 7000 6149 5 1320 814 167 0 11 chr1 96430636 96430818 -100764614 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1320 1581 275 56 144 chr1 96430852 96431705 -100763727 - Lx9 LINE L1 -272 7372 6595 5 1320 373 288 73 33 chr1 96432129 96432280 -100763152 + LTR81B LTR ERV1? 1231 1387 -6 5 1320 528 214 8 23 chr1 96432867 96432996 -100762436 - Lx6 LINE L1 -585 6875 6749 5 1320 420 71 0 0 chr1 96432996 96433052 -100762380 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1320 255 358 50 0 chr1 96433061 96433181 -100762251 - Lx7 LINE L1 -955 6741 6616 5 1320 1406 262 48 42 chr1 96433188 96433646 -100761786 + Lx6 LINE L1 6977 7437 -23 5 1320 673 152 51 57 chr1 96434602 96434777 -100760655 + MYSERV6-int LTR ERVK 4843 5016 -3943 5 1320 4959 67 19 1 chr1 96435135 96435782 -100759650 - L1_Mus1 LINE L1 0 6567 5910 5 1320 4735 68 177 0 chr1 96435782 96436489 -100758943 + L1_Mus1 LINE L1 4754 5585 -298 5 1320 4500 64 9 2 chr1 96436465 96436490 -100758942 + L1_Mus1 LINE L1 5286 5312 -571 5 1320 7803 59 3 0 chr1 96436490 96437471 -100757961 + L1Md_F2 LINE L1 5587 6570 -12 5 1320 4500 56 9 1 chr1 96437471 96438068 -100757364 + L1_Mus1 LINE L1 5313 5912 -655 5 1320 330 26 0 0 chr1 96438934 96438973 -100756459 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1320 306 0 0 0 chr1 96438973 96439006 -100756426 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1320 717 128 0 0 chr1 96439006 96439154 -100756278 + (GA)n Simple_repeat Simple_repeat 1 148 0 5 1320 288 252 41 29 chr1 96439724 96439810 -100755622 - MTEb LTR MaLR -14 365 280 5 1320 26 30 0 0 chr1 96440075 96440108 -100755324 + AT_rich Low_complexity Low_complexity 1 33 0 5 1320 342 0 0 0 chr1 96440116 96440154 -100755278 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1320 430 296 36 36 chr1 96440161 96440301 -100755131 - RSINE1 SINE B4 -21 144 5 5 1320 233 323 30 0 chr1 96440344 96440443 -100754989 + ID_B1 SINE B4 115 216 -8 5 1320 367 318 151 0 chr1 96440449 96440575 -100754857 + ID_B1 SINE B4 78 222 -2 5 1320 382 304 162 36 chr1 96441067 96441603 -100753829 - L1ME1 LINE L1 -164 6015 5394 5 1320 285 284 21 0 chr1 96441612 96441740 -100753692 - L1ME1 LINE L1 -1449 4697 4567 5 1320 239 338 47 34 chr1 96441742 96441978 -100753454 + LTR78 LTR ERV1 1019 1257 -47 5 1320 22 0 0 0 chr1 96442404 96442426 -100753006 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 23 0 0 0 chr1 96442546 96442569 -100752863 + AT_rich Low_complexity Low_complexity 1 23 0 5 1320 522 0 0 0 chr1 96443259 96443317 -100752115 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 5 1320 595 212 79 45 chr1 96444287 96444480 -100750952 - B3 SINE B2 -6 189 1 5 1320 2047 35 8 8 chr1 96445542 96445800 -100749632 + L1Md_F3 LINE L1 6313 6570 -14 5 1320 201 74 0 0 chr1 96445866 96445893 -100749539 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1320 252 176 0 81 chr1 96445961 96446035 -100749397 + RMER4A LTR ERVK 324 391 -75 5 1320 619 137 16 41 chr1 96446050 96446172 -100749260 + RMER4A LTR ERVK 346 464 -2 5 1320 516 346 7 0 chr1 96446174 96446310 -100749122 - RSINE1 SINE B4 -25 140 4 5 1320 236 245 19 0 chr1 96446438 96446491 -100748941 - Lx7 LINE L1 -1026 6670 6617 6 1320 1815 147 154 6 chr1 96446491 96446834 -100748598 - ORR1B1 LTR MaLR 0 394 1 6 1320 241 231 58 0 chr1 96446835 96446887 -100748545 - Lx7 LINE L1 -1076 6620 6566 6 1320 2676 216 87 11 chr1 96446886 96447708 -100747724 - Lx7 LINE L1 -1686 6010 5129 6 1320 1320 210 149 15 chr1 96447708 96448185 -100747247 - RMER19B LTR ERVK 0 902 362 6 1320 1282 206 14 52 chr1 96448186 96448477 -100746955 - Lx4B LINE L1 -674 6384 6105 6 1320 3929 114 43 24 chr1 96448471 96449091 -100746341 - Lx4A LINE L1 -87 6971 6340 6 1320 961 230 24 24 chr1 96449102 96449356 -100746076 - Lx7 LINE L1 -6606 1122 869 6 1320 296 231 23 86 chr1 96449378 96449506 -100745926 + Lx4A LINE L1 6935 7054 -4 6 1320 642 49 0 0 chr1 96450307 96450389 -100745043 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1320 2792 55 6 0 chr1 96451341 96451685 -100743747 - ORR1A1 LTR MaLR 0 346 1 6 1320 255 342 48 40 chr1 96451697 96451822 -100743610 + LTR33C LTR ERVL 48 173 -456 6 1320 648 0 0 0 chr1 96451824 96451896 -100743536 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1320 351 0 0 0 chr1 96451936 96451975 -100743457 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1320 32 75 0 0 chr1 96453788 96453855 -100741577 + AT_rich Low_complexity Low_complexity 1 67 0 6 1320 484 322 184 0 chr1 96453899 96454051 -100741381 + B3A SINE B2 2 181 -17 6 1320 280 254 0 33 chr1 96455524 96455585 -100739847 + PB1D9 SINE Alu 1 59 -61 6 1320 203 167 0 0 chr1 96455585 96455627 -100739805 + GA-rich Low_complexity Low_complexity 139 180 0 6 1320 512 243 0 18 chr1 96455673 96455782 -100739650 + B1_Mur1 SINE Alu 42 148 -1 6 1320 1012 296 130 42 chr1 96457450 96457926 -100737506 + MTE-int LTR MaLR 484 1001 -579 6 1320 6801 207 73 38 chr1 96457966 96459739 -100735693 - L1_Mur3 LINE L1 -20 5860 4027 6 1320 3029 102 9 0 chr1 96460186 96460629 -100734803 - Lx2A LINE L1 -3 7005 6559 6 1320 548 87 11 0 chr1 96461367 96461459 -100733973 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 6 1320 296 345 12 0 chr1 96461569 96461653 -100733779 + B4A SINE B4 3 87 -205 6 1320 9527 74 1 1 chr1 96461653 96462909 -100732523 + L1Md_F2 LINE L1 4331 5586 -297 6 1320 8303 36 0 2 chr1 96462910 96463893 -100731539 + L1Md_F2 LINE L1 5588 6568 -14 6 1320 440 306 180 12 chr1 96463911 96464083 -100731349 + B4A SINE B4 82 282 -10 6 1320 207 0 0 0 chr1 96465390 96465413 -100730019 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 6 1320 217 394 109 15 chr1 96466280 96466481 -100728951 + L4 LINE RTE 312 531 -1498 6 1320 22 0 0 0 chr1 96466495 96466517 -100728915 + AT_rich Low_complexity Low_complexity 1 22 0 6 1320 342 0 0 0 chr1 96466794 96466832 -100728600 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1320 1161 116 32 22 chr1 96466915 96467100 -100728332 - B2_Mm2 SINE B2 -8 187 1 6 1320 363 307 78 89 chr1 96467263 96467714 -100727718 + L1M2 LINE L1 2191 2636 -3507 6 20 8358 35 0 0 chr1 96468139 96469218 -100726214 - L1Md_T LINE L1 0 6582 5504 6 1321 7180 19 0 1 chr1 96469213 96470056 -100725376 + L1_Mm LINE L1 3694 4535 -1348 6 1321 377 294 41 7 chr1 96470105 96470252 -100725180 + B4A SINE B4 1 152 -140 6 1321 965 301 11 5 chr1 96470411 96470779 -100724653 + L1MA4 LINE L1 5554 5923 -377 6 1321 21 0 0 0 chr1 96470791 96470812 -100724620 + AT_rich Low_complexity Low_complexity 1 21 0 6 1321 3655 64 4 11 chr1 96471488 96471961 -100723471 - L1Md_F2 LINE L1 -12 6570 6101 6 1321 1852 66 25 39 chr1 96471961 96472243 -100723189 + L1Md_F2 LINE L1 5851 6128 -454 6 1321 238 0 0 0 chr1 96472491 96472526 -100722906 + L1_Mus2 LINE L1 6530 6564 -2 6 1321 515 318 146 26 chr1 96472946 96473337 -100722095 - L1MEg LINE L1 -4970 1114 677 6 1321 724 300 32 105 chr1 96473398 96473711 -100721721 - B4A SINE B4 -2 290 1 6 1321 1340 44 47 37 chr1 96473857 96474047 -100721385 - B2_Mm2 SINE B2 -2 193 2 6 1321 310 203 0 28 chr1 96474107 96474178 -100721254 + RMER6A LTR ERVK 368 436 -320 6 1321 582 311 20 0 chr1 96474156 96474304 -100721128 - B4 SINE B4 -130 162 12 6 1321 3991 146 48 37 chr1 96474388 96475136 -100720296 + RMER6A LTR ERVK 1 756 0 6 1321 2976 112 16 5 chr1 96475165 96475613 -100719819 + RLTR11B LTR ERVK 1 453 0 6 1321 512 271 38 22 chr1 96476751 96476936 -100718496 + B3A SINE B2 5 192 -6 6 1321 985 67 0 82 chr1 96477039 96477185 -100718247 + B1_Mm SINE Alu 5 138 -9 6 1321 443 18 0 18 chr1 96477185 96477242 -100718190 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 6 1321 2470 307 54 35 chr1 96477431 96478378 -100717054 - Lx8 LINE L1 -54 7419 6455 6 1321 1470 242 65 18 chr1 96478602 96479001 -100716431 - MTD LTR MaLR 0 419 2 6 1321 22 80 0 0 chr1 96479991 96480041 -100715391 + AT_rich Low_complexity Low_complexity 1 50 0 6 1321 556 299 107 96 chr1 96480441 96481415 -100714017 - Zaphod DNA Tip100 -12 4019 3035 6 1321 2194 116 13 0 chr1 96481423 96481741 -100713691 + ORR1A2 LTR MaLR 6 327 0 6 1321 3782 125 31 2 chr1 96481783 96482370 -100713062 - Lx2B LINE L1 -5 6995 6392 6 1321 335 314 25 42 chr1 96482677 96482916 -100712516 + L1MA6 LINE L1 6062 6296 -4 6 1321 21 0 0 0 chr1 96482918 96482939 -100712493 + AT_rich Low_complexity Low_complexity 1 21 0 6 1321 974 154 0 126 chr1 96483489 96483712 -100711720 + RLTR23 LTR ERV1 189 383 -47 6 1321 2940 36 11 8 chr1 96484282 96484649 -100710783 + L1Md_F3 LINE L1 6216 6583 -1 6 1321 29 28 0 0 chr1 96484656 96484692 -100710740 + AT_rich Low_complexity Low_complexity 1 36 0 6 1321 218 222 0 0 chr1 96485376 96485421 -100710011 + A-rich Low_complexity Low_complexity 1 45 0 6 1321 957 256 44 26 chr1 96485422 96485944 -100709488 + L1_Rod LINE L1 1013 1545 -4302 6 1321 316 139 101 0 chr1 96485946 96486025 -100709407 + L1_Rod LINE L1 1695 1781 -4066 6 1321 2178 286 174 28 chr1 96486025 96487041 -100708391 + Lx9 LINE L1 6318 7482 -162 6 1321 29 47 0 0 chr1 96487530 96487573 -100707859 + AT_rich Low_complexity Low_complexity 1 43 0 6 1321 679 288 37 18 chr1 96488036 96488308 -100707124 + L1M2 LINE L1 5463 5739 -552 6 1321 317 156 0 49 chr1 96488615 96488696 -100706736 - Lx9 LINE L1 -9 7635 7559 6 1321 31374 99 13 8 chr1 96489781 96495098 -100700334 + L1Md_F2 LINE L1 250 5584 -299 6 1321 7172 78 16 12 chr1 96495100 96496088 -100699344 + L1Md_F2 LINE L1 5587 6578 -4 6 1321 504 0 0 0 chr1 96496163 96496219 -100699213 + (A)n Simple_repeat Simple_repeat 1 56 0 6 1321 669 152 8 0 chr1 96497856 96497988 -100697444 - Lx2B LINE L1 -5 6995 6863 6 1321 3695 177 116 68 chr1 96498066 96498824 -100696608 - MYSERV16_I-int LTR ERVK -285 2041 1288 6 1321 201 39 0 0 chr1 96498824 96498850 -100696582 + (TATTG)n Simple_repeat Simple_repeat 3 28 0 6 1321 3695 177 116 68 chr1 96498850 96499135 -100696297 - MYSERV16_I-int LTR ERVK -1039 1287 948 6 1321 686 241 6 51 chr1 96499137 96499312 -100696120 + RLTR17 LTR ERVK 526 692 0 6 1321 273 29 0 0 chr1 96499499 96499533 -100695899 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1321 381 319 19 96 chr1 96499789 96499997 -100695435 - B3 SINE B2 0 216 25 6 1321 742 311 156 19 chr1 96500047 96500516 -100694916 - Lx8 LINE L1 -8 7465 6933 1 1321 1738 310 112 24 chr1 96500514 96501819 -100693613 + Lx8 LINE L1 5454 6911 -562 1 1321 345 310 61 45 chr1 96502310 96502442 -100692990 - B3A SINE B2 -16 182 49 2 1321 809 191 118 14 chr1 96502600 96502737 -100692695 + RMER1B Other Other 798 943 -123 3 1321 410 0 20 0 chr1 96502737 96502787 -100692645 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 4 1321 809 191 118 14 chr1 96502787 96502861 -100692571 + RMER1B Other Other 944 1030 -36 3 1321 4308 60 20 12 chr1 96502893 96503453 -100691979 + LTRIS2 LTR ERV1 1 564 0 5 1321 2756 72 46 31 chr1 96503695 96504110 -100691322 + BGLII LTR ERVK 1 421 0 6 1321 354 336 22 63 chr1 96504120 96504342 -100691090 + RMER12 LTR ERVK 771 983 -339 7 1321 493 340 36 90 chr1 96504334 96504612 -100690820 - B4A SINE B4 -8 284 22 8 1321 498 287 7 0 chr1 96504651 96504787 -100690645 - B1_Mur1 SINE Alu -9 140 4 9 1321 1982 168 64 28 chr1 96504972 96505365 -100690067 - MTB_Mm LTR MaLR 0 407 1 1 1321 412 308 73 36 chr1 96505499 96505718 -100689714 - RLTR17 LTR ERVK -126 566 340 1 1321 1044 95 0 7 chr1 96506188 96506336 -100689096 + B1_Mus1 SINE Alu 2 148 0 1 1321 184 68 32 63 chr1 96506336 96506399 -100689033 + A-rich Low_complexity Low_complexity 6 66 0 1 1321 222 62 0 0 chr1 96506400 96506432 -100689000 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1321 513 47 0 0 chr1 96506603 96506667 -100688765 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1321 197 65 32 0 chr1 96506843 96506874 -100688558 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1 1321 302 202 118 12 chr1 96506903 96506988 -100688444 + L1MC3 LINE L1 7500 7593 -192 1 1321 224 59 29 0 chr1 96507285 96507319 -100688113 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1 1321 180 0 0 0 chr1 96507361 96507381 -100688051 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1321 1113 79 0 0 chr1 96507383 96507523 -100687909 - B1_Mus1 SINE Alu -6 142 3 2 1321 1119 236 90 7 chr1 96508862 96509140 -100686292 - Lx7 LINE L1 -769 6927 6627 2 1321 7102 211 38 34 chr1 96509373 96511825 -100683607 - Lx7 LINE L1 -1079 6617 4143 2 1321 807 48 0 58 chr1 96511920 96512075 -100683357 + (GGGAGA)n Simple_repeat Simple_repeat 3 148 0 2 1321 689 178 63 6 chr1 96512075 96512233 -100683199 - Lx7 LINE L1 -2817 3063 2897 2 1321 1839 233 127 18 chr1 96512336 96513235 -100682197 - Lx7 LINE L1 -3421 2456 1430 2 1321 444 67 0 0 chr1 96513322 96513382 -100682050 + (TTG)n Simple_repeat Simple_repeat 3 62 0 2 1321 3751 224 46 21 chr1 96513536 96514394 -100681038 - Lx9 LINE L1 -158 7486 6606 2 1321 2848 83 33 13 chr1 96514394 96514786 -100680646 - MTB LTR MaLR 0 400 1 2 1321 3751 224 46 21 chr1 96514786 96514832 -100680600 - Lx9 LINE L1 -1039 6605 6559 2 1321 268 365 32 4 chr1 96514835 96514948 -100680484 + MIR SINE MIR 78 203 -65 2 1321 3838 36 0 17 chr1 96514948 96515424 -100680008 + L1Md_F2 LINE L1 6115 6582 0 2 1321 181 366 70 47 chr1 96515424 96515482 -100679950 + MIRb SINE MIR 204 260 -8 2 1321 7691 139 47 4 chr1 96516509 96518422 -100677010 + Lx4B LINE L1 5049 7053 -5 2 1321 423 0 0 0 chr1 96518422 96518469 -100676963 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1321 227 250 54 0 chr1 96518552 96518608 -100676824 - PB1D10 SINE Alu -37 80 22 3 1321 303 136 0 0 chr1 96518835 96518894 -100676538 + (GGGAGA)n Simple_repeat Simple_repeat 2 60 0 3 1321 750 141 31 43 chr1 96519599 96519762 -100675670 + RLTR31_Mm LTR ERVK 216 376 -185 3 1321 846 258 98 11 chr1 96519767 96520041 -100675391 - Lx7 LINE L1 -474 7222 6925 3 1321 2657 219 43 30 chr1 96520038 96521059 -100674373 - L1_Mur3 LINE L1 -3986 1894 853 3 1321 601 240 37 43 chr1 96522592 96522753 -100672679 - RSINE1 SINE B4 0 165 6 3 1321 689 215 11 68 chr1 96524026 96524216 -100671216 + B2_Mm2 SINE B2 3 181 -14 3 1321 26 0 0 0 chr1 96525163 96525189 -100670243 + AT_rich Low_complexity Low_complexity 1 26 0 3 1321 645 214 120 14 chr1 96525203 96525336 -100670096 - Lx9 LINE L1 -8 7636 7480 3 1321 583 92 18 0 chr1 96525336 96525445 -100669987 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 3 1321 645 214 120 14 chr1 96525445 96525520 -100669912 - Lx9 LINE L1 -165 7479 7406 3 1321 327 113 0 0 chr1 96526791 96526853 -100668579 + (A)n Simple_repeat Simple_repeat 1 62 0 4 1321 26 50 0 0 chr1 96527167 96527207 -100668225 + AT_rich Low_complexity Low_complexity 1 40 0 4 1321 225 234 27 36 chr1 96527733 96527844 -100667588 - Lx9 LINE L1 -3 7641 7532 4 1321 494 324 92 55 chr1 96527937 96528290 -100667142 + ORR1E LTR MaLR 1 379 0 4 1321 21 36 0 0 chr1 96528429 96528457 -100666975 + AT_rich Low_complexity Low_complexity 1 28 0 4 1321 239 257 0 34 chr1 96529427 96529544 -100665888 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 4 1321 245 252 16 16 chr1 96529950 96530071 -100665361 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1321 322 136 34 11 chr1 96530047 96530136 -100665296 + (CATATA)n Simple_repeat Simple_repeat 5 95 0 4 1321 852 162 178 0 chr1 96530297 96530488 -100664944 - URR1B DNA MER1_type 0 225 1 4 1321 502 314 7 41 chr1 96531227 96531373 -100664059 + RSINE1 SINE B4 4 144 -21 4 1321 459 0 0 0 chr1 96531378 96531429 -100664003 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 1321 6698 60 32 6 chr1 96531534 96532439 -100662993 - RLTR13B3 LTR ERVK 0 929 1 5 1321 192 261 0 0 chr1 96532761 96532826 -100662606 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1321 417 246 55 0 chr1 96532857 96532967 -100662465 + MTC LTR MaLR 1 116 -305 5 1321 229 71 0 0 chr1 96532967 96532995 -100662437 - Lx2 LINE L1 -752 6245 6218 5 1321 4694 110 4 16 chr1 96532995 96533680 -100661752 + Lx2 LINE L1 6321 6997 0 5 1321 933 202 37 0 chr1 96533698 96533886 -100661546 + MTC LTR MaLR 68 262 -159 5 1321 1076 255 156 68 chr1 96535626 96536114 -100659318 - RMER5 LTR ERV1 -3 531 1 5 1321 788 271 21 63 chr1 96536893 96536906 -100658526 - L1_Mm LINE L1 -2238 5644 5634 5 1321 5236 139 49 9 chr1 96536906 96537020 -100658412 - Lx LINE L1 -3 6651 6536 5 1321 276 30 0 0 chr1 96537020 96537053 -100658379 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 5 1321 5236 139 49 9 chr1 96537053 96537817 -100657615 - Lx LINE L1 -119 6535 5740 5 1321 1995 106 5 17 chr1 96537817 96538134 -100657298 - L1_Mm LINE L1 -2249 5633 5318 5 1321 26 30 0 0 chr1 96538761 96538794 -100656638 + AT_rich Low_complexity Low_complexity 1 33 0 5 1321 724 375 27 45 chr1 96538948 96539283 -100656149 - MLT1E1A LTR MaLR -66 614 286 6 1321 275 284 85 17 chr1 96539392 96539510 -100655922 - MLT-int LTR MaLR -1 1734 1609 6 1321 265 377 18 61 chr1 96539547 96539711 -100655721 - MLT1E1 LTR MaLR -77 577 421 6 1321 2344 41 14 10 chr1 96540505 96540799 -100654633 + L1Md_F2 LINE L1 6287 6581 -1 6 1321 391 61 81 0 chr1 96540805 96540881 -100654551 + L1Md_F LINE L1 1077 1158 -2660 6 1321 320 226 38 38 chr1 96541240 96541373 -100654059 - RLTR15 LTR ERVK -18 341 209 6 1321 357 82 0 0 chr1 96541479 96541528 -100653904 + (TCC)n Simple_repeat Simple_repeat 1 49 0 6 1321 984 75 0 0 chr1 96541706 96541840 -100653592 + (TCCC)n Simple_repeat Simple_repeat 4 137 0 6 1321 1061 80 51 6 chr1 96541855 96542032 -100653400 - L1_Mus4 LINE L1 -7 6629 6445 6 1321 363 156 0 30 chr1 96542034 96542116 -100653316 + L1_Mus4 LINE L1 6328 6396 -240 6 1321 687 223 72 27 chr1 96542282 96542503 -100652929 - RLTR15 LTR ERVK -128 231 1 6 1321 37474 41 1 2 chr1 96542988 96548830 -100646602 - L1Md_T LINE L1 -1 6584 651 6 1321 467 257 30 0 chr1 96548806 96548907 -100646525 - Lx6 LINE L1 -116 7344 7241 7 1321 612 254 15 73 chr1 96549547 96549806 -100645626 + L1_Mur3 LINE L1 5161 5404 -476 7 1321 8803 14 0 0 chr1 96549802 96550954 -100644478 - L1Md_A LINE L1 -1 6581 5430 7 1321 1022 297 45 25 chr1 96550957 96551499 -100643933 + Lx9 LINE L1 5385 5971 -1673 7 1321 777 309 87 19 chr1 96552279 96552726 -100642706 - Lx9 LINE L1 -1 7472 7013 7 1321 472 244 64 86 chr1 96552694 96552914 -100642518 + Lx9 LINE L1 6969 7183 -461 7 1321 237 175 34 34 chr1 96553092 96553151 -100642281 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 7 1321 285 275 26 35 chr1 96553168 96553281 -100642151 + ID4 SINE ID 8 119 -33 7 1321 333 313 100 28 chr1 96553732 96554021 -100641411 + L1M4 LINE L1 3730 4039 -2107 7 1321 396 0 0 0 chr1 96554209 96554253 -100641179 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1321 3152 145 22 21 chr1 96554319 96554853 -100640579 + Lx2 LINE L1 6424 6958 -39 7 1321 290 323 69 23 chr1 96554858 96554988 -100640444 + MLT1A0 LTR MaLR 15 150 -215 8 1321 236 336 45 45 chr1 96555123 96555453 -100639979 + L1M4 LINE L1 5537 5866 -298 7 1321 696 224 69 23 chr1 96555657 96555831 -100639601 + Lx9 LINE L1 5803 5984 -1660 8 1321 23012 45 1 37 chr1 96559750 96562819 -100632613 + L1Md_F2 LINE L1 2629 5586 -297 8 1321 7848 51 4 1 chr1 96562820 96563798 -100631634 + L1Md_F2 LINE L1 5588 6568 -14 8 1321 318 248 14 0 chr1 96564888 96564991 -100630441 + L1M3 LINE L1 5644 5751 -438 8 1321 282 303 47 36 chr1 96564981 96565173 -100630259 - L1M2 LINE L1 -643 5648 5455 8 1321 1604 142 30 127 chr1 96565703 96566066 -100629366 + ORR1A4 LTR MaLR 1 328 -1 8 1321 430 284 53 72 chr1 96566078 96566230 -100629202 + B3A SINE B2 50 198 0 8 1321 408 179 84 0 chr1 96566230 96566325 -100629107 + L1MA4 LINE L1 5813 5915 -385 8 1321 540 0 0 0 chr1 96566445 96566505 -100628927 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 8 1321 273 330 85 25 chr1 96566671 96566789 -100628643 - B1F1 SINE Alu -23 126 2 8 1321 672 67 0 0 chr1 96566991 96567081 -100628351 + (TC)n Simple_repeat Simple_repeat 1 90 0 9 1321 603 40 0 0 chr1 96567233 96567307 -100628125 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1321 22 35 0 0 chr1 96567325 96567354 -100628078 + AT_rich Low_complexity Low_complexity 1 29 0 9 1321 305 341 41 47 chr1 96567594 96567766 -100627666 - HAL1-3A_ME LINE L1 -404 2454 2284 9 1321 274 345 0 11 chr1 96567787 96567875 -100627557 - PB1D10 SINE Alu -6 111 25 9 1321 821 130 60 30 chr1 96568685 96568852 -100626580 + Lx3A LINE L1 6800 6971 -10 9 1321 708 98 0 0 chr1 96568912 96569014 -100626418 + (TA)n Simple_repeat Simple_repeat 1 102 0 9 1321 326 309 40 81 chr1 96570315 96570463 -100624969 + B1F2 SINE Alu 1 142 -7 9 1321 263 314 0 14 chr1 96570462 96570533 -100624899 + ID SINE ID 15 84 -140 9 1321 2483 250 56 12 chr1 96570633 96571369 -100624063 + L1_Rod LINE L1 493 1260 -6348 9 1321 2653 249 43 57 chr1 96571352 96572396 -100623036 + L1_Rod LINE L1 1796 2825 -3022 9 1321 1315 281 25 14 chr1 96572403 96572760 -100622672 + ORR1D1 LTR MaLR 1 361 -13 1 1321 791 250 56 44 chr1 96572819 96573158 -100622274 - RLTR15 LTR ERVK -16 343 1 1 1321 351 201 5 182 chr1 96573160 96573279 -100622153 + ORR1D1 LTR MaLR 4 126 -248 1 1321 1147 245 20 109 chr1 96573295 96573643 -100621789 + RMER15 LTR ERVL 23 339 -236 1 1321 539 214 101 46 chr1 96573654 96573892 -100621540 + L1_Rod LINE L1 5092 5336 -807 9 1321 288 91 0 0 chr1 96573897 96573941 -100621491 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1 1321 909 149 17 0 chr1 96573970 96574145 -100621287 + GA-rich Low_complexity Low_complexity 2 179 0 1 1321 751 212 38 29 chr1 96574149 96574245 -100621187 + L1_Rod LINE L1 5312 5408 -439 9 1321 279 0 0 0 chr1 96574245 96574276 -100621156 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 1321 751 212 38 29 chr1 96574276 96574388 -100621044 + L1_Rod LINE L1 5409 5522 -325 9 1321 2718 215 82 24 chr1 96574383 96575464 -100619968 - L1_Rod LINE L1 -3734 2113 966 1 1321 32 43 0 0 chr1 96575627 96575673 -100619759 + AT_rich Low_complexity Low_complexity 1 46 0 1 1321 597 225 38 0 chr1 96575915 96576075 -100619357 - L1_Rod LINE L1 -1486 4361 4196 1 1321 392 280 9 18 chr1 96576321 96576430 -100619002 - PB1D10 SINE Alu -1 116 9 1 1321 585 211 108 47 chr1 96576552 96576812 -100618620 - ORR1C2 LTR MaLR 0 394 21 1 1321 1152 101 16 16 chr1 96576812 96577003 -100618429 - L1_Mus3 LINE L1 -5 6633 6443 1 1321 585 200 52 75 chr1 96577003 96577021 -100618411 - ORR1C2 LTR MaLR -364 20 2 1 1321 367 333 69 37 chr1 96577189 96577435 -100617997 - L1MDb LINE L1 -5214 1326 1073 1 1321 356 308 51 13 chr1 96577792 96577950 -100617482 - L1MDb LINE L1 -6158 475 312 1 1321 192 65 87 0 chr1 96577980 96578026 -100617406 + A-rich Low_complexity Low_complexity 3 52 0 1 1321 347 290 142 0 chr1 96578133 96578288 -100617144 - L1MDb LINE L1 -6440 193 17 1 1321 2103 69 17 36 chr1 96578817 96579118 -100616314 + Lx3_Mus LINE L1 5623 5917 -1092 1 1321 825 199 0 0 chr1 96579121 96579292 -100616140 + A-rich Low_complexity Low_complexity 1 171 0 1 1321 7335 102 10 17 chr1 96579293 96580403 -100615029 + Lx3_Mus LINE L1 5908 7009 0 1 1321 1753 178 23 3 chr1 96581271 96581621 -100613811 - RLTR15 LTR ERVK 0 359 3 1 1321 21 36 0 0 chr1 96581884 96581912 -100613520 + AT_rich Low_complexity Low_complexity 1 28 0 1 1321 182 33 0 62 chr1 96582081 96582113 -100613319 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1321 722 216 128 41 chr1 96582120 96582418 -100613014 - ORR1C2 LTR MaLR 0 384 35 1 1321 5842 190 47 9 chr1 96582418 96583827 -100611605 + L1_Mur3 LINE L1 2826 4287 -1593 1 1321 284 160 80 0 chr1 96583839 96583889 -100611543 + L1_Mur3 LINE L1 5483 5536 -344 1 1321 251 238 109 87 chr1 96583889 96584013 -100611419 - Charlie25 DNA MER1_type -447 2077 1951 1 1321 2726 200 39 9 chr1 96584013 96584572 -100610860 + RLTR20B3 LTR ERVK 1 576 -1 1 1321 3249 242 43 16 chr1 96584572 96585381 -100610051 - Lx6 LINE L1 -810 6650 5820 1 1321 3408 85 19 25 chr1 96586976 96587461 -100607971 - L1Md_F2 LINE L1 -14 6568 6087 1 1321 874 110 0 0 chr1 96587463 96587599 -100607833 + L1_Mm LINE L1 3158 3293 -2590 1 1321 1366 140 0 8 chr1 96587636 96587873 -100607559 + L1Md_F2 LINE L1 6348 6582 0 1 1321 12611 72 27 4 chr1 96587876 96589701 -100605731 - L1Md_F LINE L1 -2919 2964 1119 1 1321 539 75 21 0 chr1 96589701 96589795 -100605637 - L1Md_T LINE L1 0 6582 6487 1 1321 4999 146 44 42 chr1 96589795 96590804 -100604628 - L1Md_F LINE L1 -5586 1138 73 1 1321 576 0 0 0 chr1 96591237 96591301 -100604131 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 1321 246 62 0 0 chr1 96591464 96591496 -100603936 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1321 216 0 0 0 chr1 96592055 96592079 -100603353 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1321 375 282 62 26 chr1 96592107 96592220 -100603212 + PB1D9 SINE Alu 3 119 -1 1 1321 234 116 0 0 chr1 96592227 96592270 -100603162 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1 1321 445 356 68 40 chr1 96592331 96592682 -100602750 - L1M5 LINE L1 -880 5266 4906 1 1321 233 171 0 0 chr1 96593015 96593050 -100602382 - tRNA-Arg-AGA tRNA tRNA -39 37 3 1 1321 1036 124 11 0 chr1 96593095 96593273 -100602159 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1321 820 282 88 74 chr1 96593516 96593960 -100601472 - RLTR12B LTR ERVK -31 497 48 1 1321 532 332 106 19 chr1 96594348 96594612 -100600820 - MLT1A0 LTR MaLR -52 313 27 1 1321 252 243 65 37 chr1 96594706 96594813 -100600619 - MLT1A0-int LTR MaLR -1620 115 6 1 1321 563 346 105 16 chr1 96594821 96595144 -100600288 - MLT1A0 LTR MaLR -3 362 11 1 1321 399 326 38 8 chr1 96595592 96595725 -100599707 - ID_B1 SINE B4 -9 215 79 1 1321 4250 156 31 5 chr1 96595965 96596812 -100598620 - Lx4B LINE L1 -680 6378 5493 1 1321 3161 188 27 27 chr1 96596797 96597469 -100597963 + Lx4B LINE L1 6370 7041 -17 1 1321 24 0 0 0 chr1 96597472 96597496 -100597936 + AT_rich Low_complexity Low_complexity 1 24 0 1 1321 26 82 0 0 chr1 96597650 96597711 -100597721 + AT_rich Low_complexity Low_complexity 1 61 0 1 1321 373 275 56 60 chr1 96598583 96598815 -100596617 - L1MB7 LINE L1 -52 6132 5902 1 1321 392 196 32 58 chr1 96598909 96599099 -100596333 + Lx9 LINE L1 7460 7644 0 1 1321 1671 206 24 8 chr1 96599136 96599486 -100595946 + MT2A LTR ERVL 1 464 -69 1 1321 342 304 186 22 chr1 96599561 96599814 -100595618 - MER74A LTR ERVL -304 318 68 1 1322 37 62 0 0 chr1 96600755 96600820 -100594612 + AT_rich Low_complexity Low_complexity 1 65 0 1 1322 218 173 0 37 chr1 96601682 96601736 -100593696 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1322 374 19 0 54 chr1 96603302 96603358 -100592074 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1322 21 0 0 0 chr1 96604010 96604031 -100591401 + AT_rich Low_complexity Low_complexity 1 21 0 1 1322 899 193 63 84 chr1 96604260 96604594 -100590838 - Lx9 LINE L1 -2 7642 7316 1 1322 334 345 167 13 chr1 96604920 96605310 -100590122 + Charlie6 DNA MER1_type 806 1255 -2245 1 1322 756 228 30 24 chr1 96605362 96605528 -100589904 + Lx5 LINE L1 6719 6885 -165 1 1322 1434 94 61 0 chr1 96605523 96605735 -100589697 - Lx3_Mus LINE L1 -512 6497 6273 1 1322 2111 112 0 16 chr1 96605731 96606040 -100589392 + Lx3A LINE L1 6467 6770 -211 1 1322 273 324 87 64 chr1 96606079 96606425 -100589007 + Charlie6 DNA MER1_type 2268 2621 -879 1 1322 300 301 200 19 chr1 96606458 96606668 -100588764 + L1MEc LINE L1 108 355 -6045 1 1322 338 314 67 50 chr1 96606907 96607145 -100588287 + L1MEc LINE L1 602 843 -5557 1 1322 1107 164 87 0 chr1 96607435 96607642 -100587790 + URR1B DNA MER1_type 1 225 0 1 1322 320 0 25 0 chr1 96607758 96607798 -100587634 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1322 785 88 22 7 chr1 96607968 96608105 -100587327 + L1_Mus3 LINE L1 6495 6633 -5 1 1322 354 348 52 106 chr1 96610144 96610511 -100584921 + ORR1E LTR MaLR 2 348 -11 1 1322 891 315 54 50 chr1 96610530 96611011 -100584421 + L1M4 LINE L1 389 871 -5671 1 1322 1385 278 42 59 chr1 96611214 96611691 -100583741 + Lx6 LINE L1 6966 7434 -26 1 1322 345 252 104 0 chr1 96611697 96611812 -100583620 - L1M4 LINE L1 -2431 3715 3589 1 1322 312 278 95 0 chr1 96611817 96611943 -100583489 + L1M4 LINE L1 5628 5765 -413 1 1322 306 0 0 0 chr1 96611974 96612008 -100583424 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1322 1166 256 93 31 chr1 96612011 96612366 -100583066 + MTD LTR MaLR 43 419 0 1 1322 348 386 48 17 chr1 96612784 96613074 -100582358 - MLT1H1-int LTR MaLR -878 531 233 1 1322 278 324 62 44 chr1 96613360 96613473 -100581959 - PB1D10 SINE Alu 0 117 3 1 1322 252 339 202 0 chr1 96613593 96613717 -100581715 - MLT1H1 LTR MaLR -9 546 398 1 1322 336 207 33 33 chr1 96614060 96614210 -100581222 + (TA)n Simple_repeat Simple_repeat 2 151 0 1 1322 451 313 112 5 chr1 96614342 96614513 -100580919 - B3A SINE B2 -34 182 1 1 1322 807 170 7 0 chr1 96614588 96614729 -100580703 + URR1B DNA MER1_type 83 224 -1 1 1322 217 173 0 19 chr1 96614739 96614792 -100580640 + A-rich Low_complexity Low_complexity 6 57 0 1 1322 356 342 306 23 chr1 96615838 96616117 -100579315 - MLT1F1 LTR MaLR -119 450 93 1 1322 220 240 13 39 chr1 96616311 96616389 -100579043 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 1 1322 267 31 0 0 chr1 96616513 96616545 -100578887 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1322 28 61 0 0 chr1 96616593 96616642 -100578790 + AT_rich Low_complexity Low_complexity 1 49 0 1 1322 288 0 0 0 chr1 96618389 96618421 -100577011 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1322 25 0 0 0 chr1 96619198 96619223 -100576209 + AT_rich Low_complexity Low_complexity 1 25 0 1 1322 26 93 0 0 chr1 96619370 96619445 -100575987 + AT_rich Low_complexity Low_complexity 1 75 0 1 1322 37961 30 1 1 chr1 96619469 96626316 -100569116 - L1Md_T LINE L1 -1 6584 1 1 1322 211 319 64 0 chr1 96626361 96626455 -100568977 - MIRb SINE MIR -67 201 102 1 1322 207 100 0 0 chr1 96626735 96626765 -100568667 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 1 1322 1640 204 86 13 chr1 96626772 96627202 -100568230 - Lx4B LINE L1 -70 6980 6480 1 1322 1410 133 22 0 chr1 96627203 96627429 -100568003 - Lx2B LINE L1 -1125 5875 5645 1 1322 1203 139 26 39 chr1 96627430 96627602 -100567830 + L1_Mur2 LINE L1 5189 5364 -513 1 1322 1135 76 0 0 chr1 96627602 96627747 -100567685 + B1_Mus1 SINE Alu 2 146 -2 1 1322 203 0 37 0 chr1 96627747 96627774 -100567658 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1322 1203 139 26 39 chr1 96627774 96627832 -100567600 + L1_Mur2 LINE L1 5365 5416 -461 1 1322 784 102 0 59 chr1 96627835 96627970 -100567462 - L1_Mus2 LINE L1 -1 6565 6439 1 1322 897 70 7 85 chr1 96627970 96628111 -100567321 + L1_Mus2 LINE L1 6303 6432 -134 1 1322 1390 161 20 12 chr1 96628106 96628352 -100567080 + L1_Mur2 LINE L1 5405 5652 -225 1 1322 384 22 0 0 chr1 96629217 96629262 -100566170 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1 1322 1125 58 0 0 chr1 96629262 96629399 -100566033 - B1_Mus1 SINE Alu -11 137 1 1 1322 235 373 27 0 chr1 96629402 96629477 -100565955 - FLAM_A SINE Alu -217 78 2 1 1322 24 32 0 0 chr1 96629598 96629629 -100565803 + AT_rich Low_complexity Low_complexity 1 31 0 1 1322 256 306 54 36 chr1 96630043 96630155 -100565277 + B4A SINE B4 56 169 -123 1 1322 1083 288 78 17 chr1 96630845 96631191 -100564241 + MTE2b LTR MaLR 5 371 -8 1 1322 4535 119 9 7 chr1 96631454 96631562 -100563870 + L1_Mur2 LINE L1 4622 4727 -1150 1 1322 396 0 0 0 chr1 96631562 96631606 -100563826 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1322 4535 119 9 7 chr1 96631606 96632235 -100563197 + L1_Mur2 LINE L1 4728 5361 -516 1 1322 7591 61 17 2 chr1 96632230 96632339 -100563093 - L1_Mm LINE L1 -531 5352 5244 1 1322 351 0 0 0 chr1 96632339 96632378 -100563054 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1322 7591 61 17 2 chr1 96632378 96633270 -100562162 - L1_Mm LINE L1 -640 5243 4338 1 1322 342 0 0 0 chr1 96633971 96634009 -100561423 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1322 463 310 18 0 chr1 96634030 96634143 -100561289 - RSINE1 SINE B4 -49 116 2 2 1322 250 394 20 27 chr1 96634720 96634866 -100560566 + MLT1E3 LTR MaLR 273 417 -207 2 1322 1995 152 103 29 chr1 96635374 96635753 -100559679 - MTC LTR MaLR -14 407 1 2 1322 294 284 37 0 chr1 96636576 96636657 -100558775 + L3 LINE CR1 4405 4488 -1 2 1322 411 21 0 0 chr1 96637149 96637197 -100558235 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1322 1020 32 0 0 chr1 96637197 96637320 -100558112 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1322 1823 34 4 21 chr1 96638846 96639085 -100556347 + L1Md_F2 LINE L1 6348 6582 0 2 1322 1780 186 67 108 chr1 96639218 96639729 -100555703 - L1_Mus4 LINE L1 0 6636 6147 2 1322 805 211 69 14 chr1 96639711 96639927 -100555505 + Lx LINE L1 6427 6654 0 2 1322 186 71 0 0 chr1 96640818 96640846 -100554586 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 1322 267 324 93 0 chr1 96640925 96641033 -100554399 - PB1D7 SINE Alu 0 120 3 2 1322 25 0 0 0 chr1 96643143 96643168 -100552264 + AT_rich Low_complexity Low_complexity 1 25 0 2 1322 527 166 67 146 chr1 96643563 96643803 -100551629 - Lx7 LINE L1 0 7696 7476 2 1322 2418 185 199 55 chr1 96643822 96644098 -100551334 - RMER12 LTR ERVK -74 1248 939 2 1322 378 0 0 0 chr1 96644098 96644140 -100551292 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1322 2418 185 199 55 chr1 96644140 96644596 -100550836 - RMER12 LTR ERVK -384 938 411 2 1322 211 357 110 8 chr1 96644705 96644832 -100550600 + B1F SINE Alu 1 140 -9 2 1322 836 149 23 0 chr1 96644927 96645101 -100550331 + GA-rich Low_complexity Low_complexity 2 179 0 2 1322 28 48 0 0 chr1 96645189 96645231 -100550201 + AT_rich Low_complexity Low_complexity 1 42 0 2 1322 1150 27 0 14 chr1 96646526 96646674 -100548758 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 2 1322 1137 88 0 12 chr1 96646674 96646830 -100548602 - B2_Mm2 SINE B2 -38 157 2 2 1322 5277 50 5 3 chr1 96646887 96647553 -100547879 - L1Md_F2 LINE L1 0 6582 5916 2 1322 393 305 126 45 chr1 96648038 96648285 -100547147 - L1MC LINE L1 -2317 3829 3563 2 1322 441 189 107 0 chr1 96648727 96648849 -100546583 - Lx9 LINE L1 -5 7639 7505 2 1322 291 280 0 0 chr1 96650731 96650806 -100544626 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 2 1322 811 266 174 8 chr1 96650901 96651269 -100544163 - L1MB3 LINE L1 -76 6107 5679 2 1322 1139 296 100 24 chr1 96652813 96653520 -100541912 - Lx8 LINE L1 -195 7278 6518 2 1322 22 80 0 0 chr1 96653652 96653702 -100541730 + AT_rich Low_complexity Low_complexity 1 50 0 2 1322 1308 191 58 87 chr1 96653997 96654411 -100541021 + L1_Rod LINE L1 1312 1713 -4134 2 1322 2657 236 67 76 chr1 96654409 96654698 -100540734 + L1_Rod LINE L1 2374 2658 -3189 2 1322 1134 63 7 0 chr1 96654698 96654840 -100540592 + B1_Mus1 SINE Alu 1 143 -5 2 1322 2657 236 67 76 chr1 96654840 96655591 -100539841 + L1_Rod LINE L1 2659 3405 -2442 2 1322 2875 136 34 24 chr1 96655591 96656057 -100539375 - MT2B LTR ERVL 0 601 131 2 1322 324 217 14 0 chr1 96656007 96656076 -100539356 - ORR1A3-int LTR MaLR -1219 744 675 2 1322 321 301 72 18 chr1 96656076 96656242 -100539190 + Lx9 LINE L1 7271 7445 -199 2 1322 678 109 0 0 chr1 96656250 96656369 -100539063 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 2 1322 281 186 54 54 chr1 96656659 96656733 -100538699 - ORR1A3-int LTR MaLR -1271 692 619 2 1322 574 43 0 0 chr1 96656669 96656738 -100538694 - MT2B LTR ERVL -532 69 1 2 1322 21 0 0 0 chr1 96657230 96657251 -100538181 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 412 302 60 128 chr1 96657315 96657596 -100537836 + B4A SINE B4 31 292 0 2 1322 243 276 0 0 chr1 96657596 96657654 -100537778 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 2 1322 28 48 0 0 chr1 96657947 96657989 -100537443 + AT_rich Low_complexity Low_complexity 1 42 0 2 1322 332 274 32 0 chr1 96658469 96658564 -100536868 - Lx9 LINE L1 -618 7026 6929 2 1322 958 204 4 104 chr1 96658732 96658846 -100536586 + MTC LTR MaLR 205 303 -118 2 1322 248 53 0 26 chr1 96658846 96658885 -100536547 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1322 1073 53 0 0 chr1 96658887 96659019 -100536413 - B1_Mm SINE Alu -14 133 2 2 1322 958 204 4 104 chr1 96659019 96659142 -100536290 + MTC LTR MaLR 304 421 0 2 1322 423 0 0 0 chr1 96659160 96659207 -100536225 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1322 546 16 0 0 chr1 96659207 96659269 -100536163 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1322 493 312 86 7 chr1 96659308 96659598 -100535834 + L1M1 LINE L1 5336 5648 -652 2 1322 3956 185 4 3 chr1 96659819 96660586 -100534846 + Lx4B LINE L1 5526 6301 -757 2 1322 554 167 3 1 chr1 96660589 96660686 -100534746 + Lx4B LINE L1 6394 6480 -578 2 1322 912 274 48 17 chr1 96660688 96660978 -100534454 + Lx4B LINE L1 6666 6964 -12 2 1322 25 51 0 0 chr1 96660978 96661017 -100534415 + AT_rich Low_complexity Low_complexity 1 39 0 2 1322 444 19 0 0 chr1 96663176 96663229 -100532203 + (TCC)n Simple_repeat Simple_repeat 1 53 0 2 1322 257 253 38 26 chr1 96664431 96664586 -100530846 + L1MA8 LINE L1 6114 6273 -18 2 1322 1080 322 40 75 chr1 96664731 96665275 -100530157 - Lx8 LINE L1 -100 7373 6849 2 1322 1101 96 0 0 chr1 96665276 96665454 -100529978 + (GGA)n Simple_repeat Simple_repeat 3 180 0 2 1322 968 252 105 43 chr1 96665761 96666179 -100529253 - Lx9 LINE L1 0 7644 7201 2 1322 210 338 38 23 chr1 96666462 96666595 -100528837 - B3 SINE B2 0 216 82 2 1322 3183 21 2 80 chr1 96667095 96667518 -100527914 + RLTR10 LTR ERVK 1 390 0 2 1322 7649 41 33 19 chr1 96667518 96668493 -100526939 + RLTR10-int LTR ERVK 1 988 -999 2 1322 8558 28 0 2 chr1 96668572 96669569 -100525863 + RLTR10-int LTR ERVK 990 1984 -3 2 1322 2893 29 2 82 chr1 96669571 96669987 -100525445 + RLTR10 LTR ERVK 1 383 -7 2 1322 1281 32 5 152 chr1 96669971 96670194 -100525238 + RLTR10 LTR ERVK 201 390 0 2 1322 180 0 0 0 chr1 96670319 96670339 -100525093 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1322 2268 171 27 57 chr1 96670421 96670901 -100524531 + RLTR31_Mm LTR ERVK 1 475 -86 2 1322 686 33 22 0 chr1 96670901 96670993 -100524439 + (TGGGGG)n Simple_repeat Simple_repeat 3 96 0 2 1322 2268 221 31 103 chr1 96670993 96671152 -100524280 + RLTR31_Mm LTR ERVK 444 584 0 2 1322 604 141 33 39 chr1 96671191 96671316 -100524116 + B1_Mur1 SINE Alu 22 141 -8 2 1322 35 24 0 0 chr1 96671795 96671837 -100523595 + AT_rich Low_complexity Low_complexity 1 42 0 2 1322 2339 220 31 16 chr1 96671990 96672535 -100522897 - Lx3C LINE L1 -2 6974 6422 2 1322 2360 195 108 26 chr1 96672590 96673585 -100521847 - Lx7 LINE L1 -33 7663 6587 2 1322 882 272 10 24 chr1 96674841 96674957 -100520475 + B3 SINE B2 9 126 -90 2 1322 2209 193 14 2 chr1 96674957 96675373 -100520059 - MTC LTR MaLR 0 421 1 2 1322 882 272 10 24 chr1 96675373 96675463 -100519969 + B3 SINE B2 127 212 -4 2 1322 848 275 142 46 chr1 96677170 96677494 -100517938 + ORR1D2 LTR MaLR 2 356 -14 2 1322 264 59 0 0 chr1 96678521 96678555 -100516877 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2 1322 22 56 0 0 chr1 96679006 96679042 -100516390 + AT_rich Low_complexity Low_complexity 1 36 0 2 1322 21 0 0 0 chr1 96680219 96680240 -100515192 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 480 17 0 0 chr1 96680246 96680305 -100515127 - L1Md_F2 LINE L1 -13 6569 6511 2 1322 21 0 0 0 chr1 96681539 96681560 -100513872 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 567 0 0 0 chr1 96681732 96681795 -100513637 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1322 342 0 0 0 chr1 96682027 96682065 -100513367 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1322 540 150 0 0 chr1 96682065 96682178 -100513254 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 1322 310 287 29 29 chr1 96683473 96683577 -100511855 + PB1D10 SINE Alu 1 104 -13 2 1322 213 39 0 0 chr1 96683577 96683603 -100511829 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1322 1198 140 5 5 chr1 96684227 96684428 -100511004 - L1_Mus3 LINE L1 -553 5330 5130 2 1322 7605 85 35 2 chr1 96684428 96685620 -100509812 + L1_Mus3 LINE L1 5363 6636 -2 2 1322 414 207 120 32 chr1 96685618 96685743 -100509689 - Lx7 LINE L1 -437 7259 7124 2 1322 413 218 45 18 chr1 96685743 96685855 -100509577 + ORR1C1 LTR MaLR 1 115 -263 2 1322 1165 114 17 18 chr1 96685855 96686067 -100509365 - RMER17A LTR ERVK 0 889 559 2 1322 29 60 0 0 chr1 96686126 96686176 -100509256 + AT_rich Low_complexity Low_complexity 1 50 0 2 1322 234 0 0 0 chr1 96687430 96687456 -100507976 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1322 514 104 0 45 chr1 96688181 96688292 -100507140 - Lx LINE L1 0 6654 6549 2 1322 1788 178 50 3 chr1 96690310 96690671 -100504761 + ORR1C1 LTR MaLR 1 378 0 2 1322 2028 124 19 3 chr1 96690757 96691065 -100504367 - ORR1A2 LTR MaLR -14 313 1 2 1322 265 303 0 13 chr1 96691645 96691722 -100503710 - Zaphod2 DNA Tip100 -3297 227 152 2 1322 3678 268 81 21 chr1 96693180 96694228 -100501204 - Lx6 LINE L1 -5 7455 6345 2 1322 31 0 0 0 chr1 96694752 96694783 -100500649 + AT_rich Low_complexity Low_complexity 1 31 0 2 1322 310 328 53 70 chr1 96695097 96695382 -100500050 - L1M5 LINE L1 -585 5579 5300 2 1322 184 119 32 48 chr1 96695482 96695544 -100499888 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 2 1322 214 239 33 43 chr1 96695581 96695673 -100499759 + (TATG)n Simple_repeat Simple_repeat 3 93 0 2 1322 990 296 49 27 chr1 96695774 96696654 -100498778 + L1MA6 LINE L1 4983 5889 -411 2 1322 182 37 37 0 chr1 96696768 96696795 -100498637 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1322 601 232 47 40 chr1 96697226 96697374 -100498058 + B1F2 SINE Alu 1 149 0 2 1322 229 157 0 38 chr1 96697376 96697429 -100498003 + A-rich Low_complexity Low_complexity 5 55 0 2 1322 26 74 0 0 chr1 96697902 96697956 -100497476 + AT_rich Low_complexity Low_complexity 1 54 0 2 1322 1090 56 35 0 chr1 96699290 96699432 -100496000 + B1_Mus2 SINE Alu 1 147 0 2 1322 393 147 0 0 chr1 96699436 96699531 -100495901 + (A)n Simple_repeat Simple_repeat 1 95 0 2 1322 205 339 101 16 chr1 96699571 96699700 -100495732 + L2 LINE L2 2728 2867 -552 2 1322 207 0 0 0 chr1 96699704 96699727 -100495705 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1322 1206 34 0 0 chr1 96700004 96700150 -100495282 + B1_Mus2 SINE Alu 2 147 0 3 1322 348 24 0 0 chr1 96700150 96700191 -100495241 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1322 225 268 44 44 chr1 96700578 96700668 -100494764 + PB1D10 SINE Alu 28 117 0 3 1322 1202 128 144 8 chr1 96700997 96701233 -100494199 + Lx3_Mus LINE L1 6737 7004 -5 3 1322 1473 296 19 12 chr1 96701482 96701893 -100493539 + Lx6 LINE L1 6878 7291 -169 3 1322 1318 246 133 15 chr1 96701909 96702321 -100493111 - Lx6 LINE L1 -7 7453 6993 3 1322 279 0 0 0 chr1 96702358 96702389 -100493043 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1322 5051 101 5 21 chr1 96702529 96703296 -100492136 + L1Md_F LINE L1 269 1023 -5496 3 1322 32563 77 3 19 chr1 96703303 96707969 -100487463 + L1Md_F2 LINE L1 505 5097 -786 3 1322 1773 33 0 0 chr1 96707969 96708184 -100487248 + L1Md_A LINE L1 6368 6582 0 3 1322 32563 72 3 2 chr1 96708184 96708677 -100486755 + L1Md_F2 LINE L1 5098 5586 -297 3 1322 7554 46 51 0 chr1 96708677 96709625 -100485807 + L1Md_F2 LINE L1 5587 6582 0 3 1322 1274 216 106 38 chr1 96709875 96710036 -100485396 + ORR1D1 LTR MaLR 3 185 -189 3 1322 288 0 0 0 chr1 96710036 96710068 -100485364 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 3 1322 1274 216 106 38 chr1 96710068 96710247 -100485185 + ORR1D1 LTR MaLR 186 366 -8 3 1322 27 73 0 0 chr1 96710758 96710813 -100484619 + AT_rich Low_complexity Low_complexity 1 55 0 3 1322 325 135 0 39 chr1 96711494 96711571 -100483861 + (TAA)n Simple_repeat Simple_repeat 2 75 0 3 1322 3809 76 39 4 chr1 96712046 96712562 -100482870 + L1Md_F2 LINE L1 6048 6581 -1 3 1322 238 148 37 0 chr1 96713449 96713503 -100481929 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1322 360 210 0 0 chr1 96713680 96713761 -100481671 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 3 1322 333 328 68 44 chr1 96713807 96714059 -100481373 - Lx9 LINE L1 -212 7432 7175 3 1322 1582 155 47 0 chr1 96714517 96714775 -100480657 - ORR1B1 LTR MaLR -124 270 1 3 1322 574 303 129 19 chr1 96714782 96715038 -100480394 + Lx8 LINE L1 7116 7399 -74 3 1322 737 210 52 54 chr1 96716560 96716856 -100478576 + L1_Mur2 LINE L1 891 1231 -6481 3 1322 565 276 53 37 chr1 96717331 96717519 -100477913 - MER2 DNA MER2_type 0 345 155 3 1322 1308 88 33 0 chr1 96718110 96718292 -100477140 + B2_Mm1t SINE B2 1 188 -5 3 1322 365 102 0 17 chr1 96718822 96718882 -100476550 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1322 617 216 126 30 chr1 96718892 96719155 -100476277 + Lx9 LINE L1 7356 7643 -1 3 1322 32 26 0 0 chr1 96719156 96719195 -100476237 + AT_rich Low_complexity Low_complexity 1 39 0 3 1322 29 47 0 0 chr1 96720516 96720559 -100474873 + AT_rich Low_complexity Low_complexity 1 43 0 3 1322 428 213 8 0 chr1 96721202 96721324 -100474108 + CT-rich Low_complexity Low_complexity 1 123 0 3 1322 22 0 0 0 chr1 96721632 96721654 -100473778 + AT_rich Low_complexity Low_complexity 1 22 0 3 1322 2102 235 105 23 chr1 96721748 96722365 -100473067 - Lx2B LINE L1 -5 6995 6328 3 1322 1212 264 93 41 chr1 96722380 96722777 -100472655 - MTD LTR MaLR -14 405 1 3 1322 276 127 18 0 chr1 96724142 96724197 -100471235 - Lx6 LINE L1 -9 7451 7396 3 1322 1857 192 6 23 chr1 96724230 96724577 -100470855 + RLTR14 LTR ERV1 1 341 -41 3 1322 762 148 34 40 chr1 96724588 96724736 -100470696 + B1_Mur4 SINE Alu 4 150 0 3 1322 3153 89 5 2 chr1 96725870 96726298 -100469134 + Lx3A LINE L1 6149 6577 -404 3 1322 3490 103 34 11 chr1 96726298 96726828 -100468604 + Lx3A LINE L1 6434 6975 -6 3 1322 28 0 0 0 chr1 96726828 96726856 -100468576 + AT_rich Low_complexity Low_complexity 1 28 0 3 1322 423 47 16 0 chr1 96726892 96726956 -100468476 - L1_Mus2 LINE L1 0 6566 6502 3 1322 3217 93 7 0 chr1 96726956 96727408 -100468024 + L1_Mm LINE L1 4758 5212 -671 3 1322 495 309 164 0 chr1 96727461 96727681 -100467751 + B4A SINE B4 18 273 -19 3 1322 817 78 0 0 chr1 96727874 96727989 -100467443 + L1_Mus1 LINE L1 6453 6567 0 3 1322 516 32 0 0 chr1 96728014 96728076 -100467356 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 3 1322 203 189 0 0 chr1 96728173 96728210 -100467222 + A-rich Low_complexity Low_complexity 1 37 0 3 1322 336 349 75 23 chr1 96728785 96728958 -100466474 + Lx8 LINE L1 7105 7286 -187 3 1322 584 147 7 0 chr1 96728997 96729133 -100466299 + GA-rich Low_complexity Low_complexity 2 138 0 3 1322 428 163 102 0 chr1 96730562 96730660 -100464772 + MTC LTR MaLR 3 110 -311 3 1322 1044 168 29 19 chr1 96730636 96730842 -100464590 + MTC LTR MaLR 214 421 0 3 1323 1574 236 75 124 chr1 96731561 96732021 -100463411 - L1_Rod LINE L1 -277 5570 5109 3 1323 320 23 0 43 chr1 96732021 96732067 -100463365 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1323 1574 236 75 124 chr1 96732067 96732188 -100463244 - L1_Rod LINE L1 -739 5108 4997 3 1323 1382 44 0 16 chr1 96732188 96732371 -100463061 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1323 1574 236 75 124 chr1 96732371 96732562 -100462870 - L1_Rod LINE L1 -851 4996 4835 3 1323 4988 241 51 50 chr1 96733031 96734881 -100460551 - L1_Rod LINE L1 -981 4866 3016 3 1323 6009 215 53 42 chr1 96735050 96735069 -100460363 - L1_Rod LINE L1 -2811 3036 3018 3 1323 1741 74 4 8 chr1 96735069 96735337 -100460095 - L1Md_F2 LINE L1 0 6582 6340 3 1323 6009 220 43 45 chr1 96735337 96737877 -100457555 - L1_Rod LINE L1 -2830 3017 489 3 1323 243 0 0 0 chr1 96738136 96738163 -100457269 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1323 567 0 0 0 chr1 96738165 96738228 -100457204 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1323 289 362 99 26 chr1 96738528 96738550 -100456882 - L2 LINE L2 -2513 906 885 3 1323 1273 233 89 20 chr1 96738550 96738900 -100456532 + ORR1D1 LTR MaLR 1 374 0 3 1323 289 362 99 26 chr1 96738900 96739149 -100456283 - L2 LINE L2 -2535 884 615 3 1323 194 151 0 64 chr1 96739172 96739250 -100456182 + A-rich Low_complexity Low_complexity 1 73 0 3 1323 26 30 0 0 chr1 96740898 96740931 -100454501 + AT_rich Low_complexity Low_complexity 1 33 0 3 1323 811 66 8 16 chr1 96741420 96741544 -100453888 + (CATA)n Simple_repeat Simple_repeat 4 126 0 3 1323 351 315 107 39 chr1 96741610 96742010 -100453422 - L1_Mur3 LINE L1 -789 5354 4935 3 1323 929 281 19 68 chr1 96742118 96742146 -100453286 - RMER15 LTR ERVL -3 572 544 3 1323 369 0 0 0 chr1 96742146 96742187 -100453245 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1323 459 0 0 0 chr1 96742187 96742237 -100453195 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1323 929 281 72 72 chr1 96742237 96742691 -100452741 - RMER15 LTR ERVL -32 543 1 3 1323 3160 40 30 0 chr1 96742874 96743271 -100452161 + L1Md_F2 LINE L1 6174 6582 0 3 1323 2649 114 37 0 chr1 96743278 96743681 -100451751 + L1_Mus3 LINE L1 6211 6628 -10 3 1323 180 0 0 0 chr1 96743681 96743701 -100451731 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1323 261 75 0 0 chr1 96744092 96744132 -100451300 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1323 30 0 0 0 chr1 96744510 96744540 -100450892 + AT_rich Low_complexity Low_complexity 1 30 0 3 1323 218 81 0 26 chr1 96745515 96745553 -100449879 + (CAT)n Simple_repeat Simple_repeat 3 39 0 3 1323 258 185 19 0 chr1 96745553 96745607 -100449825 - Lx2A LINE L1 -13 6995 6941 3 1323 22 56 0 0 chr1 96747260 96747296 -100448136 + AT_rich Low_complexity Low_complexity 1 36 0 3 1323 1287 70 0 0 chr1 96747424 96747595 -100447837 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 3 1323 249 287 11 11 chr1 96747688 96747776 -100447656 + (CATA)n Simple_repeat Simple_repeat 4 91 0 3 1323 288 77 0 0 chr1 96747785 96747824 -100447608 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1323 634 306 57 30 chr1 96749307 96749674 -100445758 + L1_Rod LINE L1 76 452 -6720 3 1323 19397 20 8 0 chr1 96749855 96752804 -100442628 - L1Md_T LINE L1 0 6582 3620 3 1323 588 184 0 18 chr1 96753456 96753567 -100441865 + L1_Mur3 LINE L1 1752 1860 -4020 3 1323 465 320 104 47 chr1 96754097 96754377 -100441055 + RMER1C Other Other 150 244 -1098 3 1323 621 0 0 0 chr1 96754377 96754446 -100440986 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 3 1323 2355 298 48 31 chr1 96754446 96755698 -100439734 + RMER1C Other Other 245 1063 -279 3 1323 210 204 0 39 chr1 96756279 96756330 -100439102 + CT-rich Low_complexity Low_complexity 2 50 0 3 1323 255 31 0 0 chr1 96756440 96756472 -100438960 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1323 356 352 9 0 chr1 96756548 96756656 -100438776 - ID_B1 SINE B4 -8 216 108 3 1323 3961 121 40 2 chr1 96756693 96757298 -100438134 - Lx2 LINE L1 0 6997 6370 3 1323 1067 81 0 0 chr1 96757971 96758107 -100437325 - B1_Mus2 SINE Alu -10 137 2 3 1323 316 192 95 14 chr1 96758241 96758315 -100437117 - ID4_ SINE ID -2 81 2 3 1323 2335 126 8 6 chr1 96758691 96759057 -100436375 - Lx LINE L1 -1 6653 6287 3 1323 202 244 0 0 chr1 96759140 96759185 -100436247 + T-rich Low_complexity Low_complexity 1 45 0 3 1323 352 338 67 10 chr1 96759320 96759529 -100435903 - L1MD2 LINE L1 -5594 953 733 3 1323 186 43 0 0 chr1 96759645 96759668 -100435764 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1323 1999 106 20 80 chr1 96760772 96761121 -100434311 + ORR1A4 LTR MaLR 2 329 0 3 1323 807 126 0 0 chr1 96761983 96762110 -100433322 + (TA)n Simple_repeat Simple_repeat 2 128 0 3 1323 378 0 0 0 chr1 96762838 96762880 -100432552 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1323 453 36 0 0 chr1 96763869 96763924 -100431508 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1323 1725 158 70 22 chr1 96763924 96764279 -100431153 - ORR1C1 LTR MaLR -3 375 4 3 1323 601 284 131 43 chr1 96764309 96764659 -100430773 - L1M2 LINE L1 -2853 3290 2910 3 1323 420 20 0 0 chr1 96764880 96764929 -100430503 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1323 288 323 71 0 chr1 96764946 96765045 -100430387 - B4A SINE B4 -32 260 155 3 1323 440 35 17 0 chr1 96765532 96765590 -100429842 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 1323 442 236 135 29 chr1 96765760 96765930 -100429502 + Charlie5 DNA MER1_type 10 197 -2427 3 1323 608 38 0 12 chr1 96765955 96766035 -100429397 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1323 1679 63 0 0 chr1 96766035 96766242 -100429190 + L1Md_F2 LINE L1 6129 6335 -247 3 1323 21 57 0 0 chr1 96766242 96766277 -100429155 + AT_rich Low_complexity Low_complexity 1 35 0 4 1323 330 242 65 38 chr1 96767189 96767312 -100428120 - MLT1A1 LTR MaLR -10 398 260 4 1323 348 189 0 0 chr1 96767363 96767437 -100427995 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1323 21 0 0 0 chr1 96767815 96767836 -100427596 + AT_rich Low_complexity Low_complexity 1 21 0 4 1323 407 311 79 32 chr1 96768209 96768398 -100427034 + MER74C LTR ERVL 30 227 -233 4 1323 561 15 0 0 chr1 96769062 96769128 -100426304 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1323 437 0 19 0 chr1 96769681 96769734 -100425698 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1323 484 311 53 39 chr1 96769896 96770181 -100425251 - MLT1D LTR MaLR -334 293 1 4 1323 22 35 0 0 chr1 96771047 96771076 -100424356 + AT_rich Low_complexity Low_complexity 1 29 0 4 1323 3220 53 0 23 chr1 96771177 96771604 -100423828 - L1Md_F3 LINE L1 0 6584 6168 4 1323 213 39 0 0 chr1 96772221 96772247 -100423185 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1323 249 181 73 49 chr1 96772387 96772490 -100422942 + LTR33A LTR ERVL 481 627 -2 4 1323 1133 197 25 0 chr1 96772889 96773092 -100422340 - RMER6C LTR ERVK -1 689 482 4 1323 192 135 0 0 chr1 96773096 96773133 -100422299 + (AACTG)n Simple_repeat Simple_repeat 1 37 0 4 1323 1054 267 28 80 chr1 96773155 96773542 -100421890 + RLTR19 LTR ERVK 133 499 0 4 1323 1766 139 62 87 chr1 96773551 96773920 -100421512 - RMER6C LTR ERVK -328 362 3 4 1323 8634 84 24 40 chr1 96775080 96776388 -100419044 - Lx3_Mus LINE L1 0 7009 5724 4 1323 578 15 0 0 chr1 96776386 96776454 -100418978 - L1Md_F2 LINE L1 -272 6310 6243 4 1323 233 261 96 27 chr1 96776452 96776598 -100418834 - L1_Mur3 LINE L1 -2084 3796 3641 4 1323 414 330 33 22 chr1 96776599 96776779 -100418653 - B3A SINE B2 -16 182 1 4 1323 182 220 0 106 chr1 96779343 96779409 -100416023 + MER5A DNA MER1_type 60 118 -71 4 1323 312 231 34 110 chr1 96779703 96779849 -100415583 + L1MB7 LINE L1 6040 6174 -10 4 1323 2506 87 0 0 chr1 96780031 96780376 -100415056 - L1_Mm LINE L1 -437 5446 5102 4 1323 1339 35 0 12 chr1 96780376 96780548 -100414884 + L1_Mus1 LINE L1 6397 6566 -1 4 1323 1236 56 0 0 chr1 96780555 96780716 -100414716 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 4 1323 312 89 22 0 chr1 96780953 96780998 -100414434 + ORR1C2 LTR MaLR 339 384 0 4 1323 2448 129 27 69 chr1 96781287 96781736 -100413696 - RLTR23 LTR ERV1 0 430 1 4 1323 29 60 0 0 chr1 96781907 96781957 -100413475 + AT_rich Low_complexity Low_complexity 1 50 0 4 1323 1925 9 0 0 chr1 96782349 96782569 -100412863 + L1Md_A LINE L1 6363 6582 0 4 1323 1016 104 7 0 chr1 96782579 96782723 -100412709 + B1_Mus1 SINE Alu 3 147 -1 4 1323 33 25 0 0 chr1 96782994 96783034 -100412398 + AT_rich Low_complexity Low_complexity 1 40 0 4 1323 22 0 0 0 chr1 96784339 96784361 -100411071 + AT_rich Low_complexity Low_complexity 1 22 0 4 1323 587 153 17 43 chr1 96784692 96784808 -100410624 + RMER6-int LTR ERVK 2141 2253 -924 4 1323 2602 136 28 20 chr1 96784808 96785265 -100410167 - RMER6B LTR ERVK 0 461 1 4 1323 1841 147 39 9 chr1 96785270 96785600 -100409832 - MYSERV6-int LTR ERVK -1197 7762 7423 4 1323 378 262 152 19 chr1 96785751 96785961 -100409471 - L1M3 LINE L1 -846 5294 5057 4 1323 1022 128 0 16 chr1 96785977 96786159 -100409273 + (TTTTC)n Simple_repeat Simple_repeat 1 179 0 4 1323 237 267 0 0 chr1 96786159 96786204 -100409228 + C-rich Low_complexity Low_complexity 2 46 0 4 1323 1047 147 0 0 chr1 96786205 96786382 -100409050 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 4 1323 423 0 0 0 chr1 96786383 96786430 -100409002 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 1323 2641 188 184 8 chr1 96786433 96787043 -100408389 + RMER6D LTR ERVK 4 720 0 4 1323 508 336 74 27 chr1 96787070 96787627 -100407805 - L1M3 LINE L1 -1145 4995 4413 4 1323 2269 205 48 64 chr1 96787671 96788235 -100407197 - Lx4B LINE L1 0 7058 6504 4 1323 2461 118 23 40 chr1 96788236 96788634 -100406798 - L1_Mur2 LINE L1 -8 5869 5479 4 1323 606 194 107 94 chr1 96790322 96790560 -100404872 + ORR1D1 LTR MaLR 1 304 -70 4 1323 7890 57 1 1 chr1 96790583 96791939 -100403493 - L1Md_F2 LINE L1 -12 6570 5215 4 1323 205 0 0 103 chr1 96792358 96792397 -100403035 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 4 1323 26 82 0 0 chr1 96793014 96793075 -100402357 + AT_rich Low_complexity Low_complexity 1 61 0 4 1323 446 33 17 0 chr1 96794107 96794167 -100401265 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1323 1283 82 28 0 chr1 96795244 96795426 -100400006 + B2_Mm2 SINE B2 2 188 -7 4 1323 226 265 0 0 chr1 96795653 96795702 -100399730 - tRNA-Ala-GCY_ tRNA tRNA -9 66 18 4 1323 402 250 33 74 chr1 96795889 96796010 -100399422 + PB1D10 SINE Alu 1 116 -1 4 1323 23 0 0 0 chr1 96796055 96796078 -100399354 + AT_rich Low_complexity Low_complexity 1 23 0 4 1323 819 151 0 0 chr1 96797068 96797227 -100398205 + GA-rich Low_complexity Low_complexity 1 159 0 4 1323 235 304 18 81 chr1 96797564 96797675 -100397757 + RMER15 LTR ERVL 454 557 -18 4 1323 365 276 16 49 chr1 96797987 96798109 -100397323 - B1F SINE Alu 0 149 32 4 1323 323 218 82 2 chr1 96798943 96799045 -100396387 - Lx4B LINE L1 -7 7051 6892 4 1323 228 67 0 0 chr1 96799178 96799208 -100396224 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1323 22 35 0 0 chr1 96799447 96799476 -100395956 + AT_rich Low_complexity Low_complexity 1 29 0 4 1323 1095 240 76 106 chr1 96799786 96800182 -100395250 - ORR1D1 LTR MaLR 0 384 1 4 1323 263 263 30 10 chr1 96800241 96800341 -100395091 + Lx9 LINE L1 7274 7375 -269 4 1323 213 175 0 0 chr1 96800354 96800394 -100395038 + T-rich Low_complexity Low_complexity 1 40 0 4 1323 405 363 0 7 chr1 96800410 96800546 -100394886 - RSINE1 SINE B4 -19 146 12 4 1323 963 132 17 0 chr1 96801373 96801547 -100393885 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 4 1323 1092 108 0 0 chr1 96801550 96801698 -100393734 - B1_Mus1 SINE Alu 0 148 1 4 1323 1174 269 71 3 chr1 96801796 96802150 -100393282 - MTE2b LTR MaLR -1 378 1 4 1323 702 225 45 55 chr1 96802352 96802554 -100392878 + B3 SINE B2 1 200 -16 4 1323 240 226 0 0 chr1 96802555 96802608 -100392824 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 4 1323 477 34 0 0 chr1 96802608 96802667 -100392765 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1323 479 202 17 50 chr1 96802669 96802789 -100392643 + PB1D9 SINE Alu 5 120 0 4 1323 233 245 0 62 chr1 96803198 96803228 -100392204 + T-rich Low_complexity Low_complexity 80 107 0 4 1323 398 20 0 19 chr1 96803228 96803280 -100392152 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 1323 2266 134 88 0 chr1 96803280 96803667 -100391765 - Lx3C LINE L1 -12 6964 6544 4 1323 233 245 0 62 chr1 96803667 96803748 -100391684 + T-rich Low_complexity Low_complexity 3 79 0 4 1323 441 354 7 0 chr1 96803764 96803911 -100391521 - RSINE1 SINE B4 -14 151 4 4 1323 589 296 69 6 chr1 96803958 96804131 -100391301 - ID_B1 SINE B4 -38 186 3 4 1323 1973 155 42 3 chr1 96804633 96804969 -100390463 + RMER6D LTR ERVK 368 716 -4 4 1323 1627 155 32 70 chr1 96805060 96805544 -100389888 - RMER17C LTR ERVK -519 439 16 4 1323 419 253 0 0 chr1 96805897 96805984 -100389448 + ORR1D2 LTR MaLR 1 87 -283 4 1323 838 228 113 44 chr1 96805992 96806468 -100388964 - RMER19B LTR ERVK 0 611 70 4 1323 338 287 53 0 chr1 96806506 96806600 -100388832 + ORR1D2 LTR MaLR 175 273 -97 4 1323 835 247 169 16 chr1 96806605 96806860 -100388572 + ORR1D2-int LTR MaLR 1071 1364 -6 4 1323 1188 320 44 0 chr1 96806864 96807208 -100388224 + ORR1D2 LTR MaLR 4 362 -8 4 1323 1553 201 53 79 chr1 96807605 96807999 -100387433 - ORR1C2 LTR MaLR 0 384 1 4 1323 2242 73 105 0 chr1 96808073 96808386 -100387046 + ORR1A1 LTR MaLR 1 346 0 4 1323 12312 79 32 6 chr1 96808386 96810133 -100385299 + ORR1A1-int LTR MaLR 1 1792 0 4 1323 2310 86 61 12 chr1 96810133 96810463 -100384969 + ORR1A1 LTR MaLR 1 346 0 4 1323 23 0 0 0 chr1 96810631 96810654 -100384778 + AT_rich Low_complexity Low_complexity 1 23 0 4 1323 402 273 97 11 chr1 96810760 96810945 -100384487 + L1M5 LINE L1 4223 4423 -1723 4 1323 2646 191 39 44 chr1 96810946 96811509 -100383923 + RLTR20B2 LTR ERVK 1 560 0 4 1323 423 195 0 0 chr1 96811905 96812018 -100383414 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 1323 381 206 0 0 chr1 96812092 96812199 -100383233 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1323 414 179 0 0 chr1 96812273 96812368 -100383064 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1323 381 206 0 0 chr1 96812442 96812549 -100382883 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1323 366 196 0 0 chr1 96812623 96812715 -100382717 + (CA)n Simple_repeat Simple_repeat 2 93 0 4 1323 999 189 4 7 chr1 96812786 96813062 -100382370 + (CA)n Simple_repeat Simple_repeat 1 275 0 4 1323 26 0 0 0 chr1 96813545 96813571 -100381861 + AT_rich Low_complexity Low_complexity 1 26 0 4 1323 214 200 0 0 chr1 96814655 96814695 -100380737 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1323 550 353 75 27 chr1 96815199 96815534 -100379898 + RMER15 LTR ERVL 223 573 -2 4 1323 378 61 0 0 chr1 96815553 96815602 -100379830 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1323 28 0 0 0 chr1 96816011 96816039 -100379393 + AT_rich Low_complexity Low_complexity 1 28 0 4 1323 246 200 134 76 chr1 96816924 96817043 -100378389 + Charlie4 DNA MER1_type 765 890 -1071 4 1323 35930 52 7 15 chr1 96818049 96823377 -100372055 + L1Md_A LINE L1 307 5586 -297 4 1323 8344 32 2 0 chr1 96823377 96824370 -100371062 + L1Md_A LINE L1 5587 6581 -1 4 1323 570 63 0 0 chr1 96825112 96825191 -100370241 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1323 3669 228 39 22 chr1 96825197 96826066 -100369366 - Lx9 LINE L1 -179 7465 6582 4 1323 490 209 0 0 chr1 96826213 96826304 -100369128 + MT2A LTR ERVL 92 182 -351 4 1323 201 147 0 0 chr1 96826308 96826342 -100369090 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 1323 1101 89 7 0 chr1 96826342 96826488 -100368944 + B1_Mus2 SINE Alu 1 147 0 5 1323 477 276 108 24 chr1 96826602 96826769 -100368663 + MT2A LTR ERVL 351 531 -2 4 1323 1211 226 90 9 chr1 96826776 96827200 -100368232 - L1_Mur3 LINE L1 -1303 4577 4120 5 1323 309 303 32 8 chr1 96827207 96827330 -100368102 - L1_Mur3 LINE L1 -1881 3999 3874 5 1323 1287 303 117 40 chr1 96827321 96828673 -100366759 - L1_Mur3 LINE L1 -2146 3734 2279 5 1323 257 284 0 0 chr1 96828676 96828757 -100366675 - L1_Mur3 LINE L1 -4482 1398 1318 5 1323 295 222 29 89 chr1 96828769 96828874 -100366558 - PB1D9 SINE Alu -48 99 6 5 1323 296 225 172 37 chr1 96828802 96828936 -100366496 - RLTR25B LTR ERVK -432 596 445 5 1323 661 171 1 0 chr1 96828826 96828956 -100366476 - MT2B LTR ERVL -273 311 181 5 1323 308 80 69 0 chr1 96828940 96828989 -100366443 - RMER6C LTR ERVK -576 144 66 5 1323 499 182 0 112 chr1 96830722 96830883 -100364549 + Lx7 LINE L1 7422 7564 -132 5 1323 259 190 51 0 chr1 96830940 96831019 -100364413 + L1_Mur3 LINE L1 1157 1239 -6473 5 1323 1194 269 108 17 chr1 96831019 96831502 -100363930 - L1_Mur3 LINE L1 -6728 1000 474 5 1323 512 362 59 35 chr1 96831911 96831931 -100363501 + MLT1A0 LTR MaLR 20 39 -326 5 1323 1179 45 0 7 chr1 96831931 96832086 -100363346 - L1Md_F3 LINE L1 -3 6581 6428 5 1323 512 362 59 35 chr1 96832086 96832403 -100363029 + MLT1A0 LTR MaLR 40 364 -1 5 1323 23 0 0 0 chr1 96833760 96833783 -100361649 + AT_rich Low_complexity Low_complexity 1 23 0 5 1323 2020 197 137 13 chr1 96834548 96835016 -100360416 - RLTR12B LTR ERVK -2 526 1 5 1323 855 173 20 7 chr1 96835018 96835169 -100360263 - Lx6 LINE L1 -753 6707 6555 5 1323 1066 258 22 4 chr1 96835167 96835393 -100360039 + Lx6 LINE L1 6994 7223 -237 5 1323 1000 335 75 9 chr1 96835662 96836117 -100359315 - Lx8 LINE L1 -522 6951 6467 5 1323 16252 68 7 6 chr1 96836169 96839086 -100356346 - L1Md_A LINE L1 -2 6580 3654 5 1323 276 100 0 0 chr1 96839086 96839126 -100356306 + (CAT)n Simple_repeat Simple_repeat 3 42 0 5 1323 9729 244 39 22 chr1 96839126 96839575 -100355857 - L1Md_A LINE L1 -2227 3653 3180 5 1323 1897 136 120 3 chr1 96839549 96839882 -100355550 - Lx2 LINE L1 0 6997 6626 5 1323 3835 159 16 13 chr1 96839883 96840043 -100355389 + Lx2 LINE L1 5195 5355 -528 5 1323 683 70 0 34 chr1 96840043 96840162 -100355270 + L1Md_F3 LINE L1 6470 6584 0 5 1323 2090 115 13 3 chr1 96840171 96840477 -100354955 + RLTR27 LTR ERVK 1 309 0 5 1323 5769 148 39 13 chr1 96840477 96841707 -100353725 + Lx2 LINE L1 5362 6623 -374 5 1323 2599 230 66 3 chr1 96842019 96842659 -100352773 - Lx9 LINE L1 -217 7427 6748 5 1323 2413 281 71 23 chr1 96842647 96843796 -100351636 - L1Md_A LINE L1 -2748 3132 1928 5 1323 21 36 0 0 chr1 96843891 96843919 -100351513 + AT_rich Low_complexity Low_complexity 1 28 0 5 1323 237 319 25 25 chr1 96844121 96844243 -100351189 - L1Md_A LINE L1 -6685 1043 922 5 1323 430 0 67 0 chr1 96844442 96844502 -100350930 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 1323 813 178 0 46 chr1 96844502 96844655 -100350777 - RLTR14 LTR ERV1 -217 165 20 5 1323 4801 86 8 5 chr1 96845239 96845903 -100349529 - L1Md_F2 LINE L1 0 6582 5917 5 1323 2166 238 53 36 chr1 96845991 96846889 -100348543 - Lx7 LINE L1 -1463 6233 5318 5 1323 315 71 0 0 chr1 96846889 96846931 -100348501 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1323 303 304 121 66 chr1 96846970 96847259 -100348173 - RLTR12B LTR ERVK -202 326 22 5 1323 1209 201 68 3 chr1 96847260 96847569 -100347863 - Lx7 LINE L1 -1858 4022 3694 5 1323 1768 158 49 5 chr1 96847576 96847946 -100347486 - Lx7 LINE L1 -3508 2372 1987 5 1323 1880 276 31 16 chr1 96848597 96849084 -100346348 + Lx6 LINE L1 6956 7449 -11 5 1323 381 93 0 0 chr1 96850132 96850186 -100345246 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1323 2196 152 39 0 chr1 96850193 96850548 -100344884 - MTC LTR MaLR -52 369 1 5 1323 787 119 167 43 chr1 96850548 96850758 -100344674 - MTC-int LTR MaLR 0 1258 1023 5 1323 23 25 0 24 chr1 96850758 96850784 -100344648 + AT_rich Low_complexity Low_complexity 1 26 0 5 1323 5235 58 5 0 chr1 96850784 96851441 -100343991 - L1Md_F2 LINE L1 -12 6570 5911 5 1323 23 25 0 24 chr1 96851441 96851455 -100343977 + AT_rich Low_complexity Low_complexity 1 14 0 5 1323 1178 70 0 60 chr1 96851455 96851637 -100343795 - L1Md_A LINE L1 -12 6572 6402 5 1323 38217 38 1 8 chr1 96851642 96857037 -100338395 - L1Md_A LINE L1 -609 5973 625 5 1323 24 32 0 0 chr1 96857636 96857667 -100337765 + AT_rich Low_complexity Low_complexity 1 31 0 5 1323 22 56 0 0 chr1 96857998 96858034 -100337398 + AT_rich Low_complexity Low_complexity 1 36 0 5 1323 1083 90 0 7 chr1 96858142 96858287 -100337145 - B1_Mm SINE Alu -2 145 2 5 1323 350 254 84 75 chr1 96858463 96858622 -100336810 + ORR1D1 LTR MaLR 1 187 -191 5 1323 195 170 0 0 chr1 96858627 96858674 -100336758 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 5 1323 405 171 0 0 chr1 96859210 96859298 -100336134 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 1323 210 341 61 0 chr1 96860208 96860290 -100335142 + MIRm SINE MIR 43 129 -147 5 1323 250 241 55 7 chr1 96860370 96860516 -100334916 + (TA)n Simple_repeat Simple_repeat 2 154 0 5 1323 1878 267 39 72 chr1 96860945 96861640 -100333792 + Lx7 LINE L1 6629 7300 -396 5 1323 595 224 55 16 chr1 96861704 96861831 -100333601 - B1_Mur3 SINE Alu -1 148 17 5 1323 220 241 34 22 chr1 96861850 96861939 -100333493 + T-rich Low_complexity Low_complexity 1 90 0 5 1324 30 0 0 0 chr1 96862258 96862288 -100333144 + AT_rich Low_complexity Low_complexity 1 30 0 5 1324 237 72 35 35 chr1 96863053 96863111 -100332321 + (TTTTTG)n Simple_repeat Simple_repeat 1 58 0 5 1324 550 350 34 5 chr1 96863126 96863330 -100332102 + MTEb LTR MaLR 126 335 -44 5 1324 437 281 0 50 chr1 96864392 96864512 -100330920 - MT2A LTR ERVL -419 114 1 5 1324 5439 86 9 8 chr1 96865481 96866228 -100329204 - L1Md_F2 LINE L1 -1 6581 5834 5 1324 22 35 0 0 chr1 96867515 96867544 -100327888 + AT_rich Low_complexity Low_complexity 1 29 0 5 1324 198 0 0 0 chr1 96869435 96869457 -100325975 + (TGG)n Simple_repeat Simple_repeat 2 23 0 5 1324 288 283 24 40 chr1 96869678 96869803 -100325629 + GA-rich Low_complexity Low_complexity 4 126 0 5 1324 330 281 34 0 chr1 96869871 96869960 -100325472 - ID_B1 SINE B4 -42 182 91 5 1324 1882 147 73 0 chr1 96870543 96870856 -100324576 + MT2B LTR ERVL 127 462 -139 5 1324 2917 55 130 0 chr1 96870856 96871256 -100324176 - L1_Mus1 LINE L1 0 6567 6116 5 1324 1495 78 5 0 chr1 96871256 96871460 -100323972 + L1_Mm LINE L1 4876 5080 -803 5 1324 949 108 12 67 chr1 96871460 96871595 -100323837 + MT2B LTR ERVL 308 564 -37 5 1324 1344 85 16 0 chr1 96871595 96871783 -100323649 + B2_Mm2 SINE B2 2 192 -3 5 1324 949 103 7 58 chr1 96871783 96871821 -100323611 + MT2B LTR ERVL 565 594 -7 5 1324 306 0 0 0 chr1 96872015 96872049 -100323383 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1324 2139 199 86 25 chr1 96873044 96873554 -100321878 + RLTR12A LTR ERVK 1 541 -27 5 1324 21 0 0 0 chr1 96873568 96873589 -100321843 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 315 200 0 0 chr1 96874259 96874334 -100321098 - Lx9 LINE L1 0 7644 7570 5 1324 1474 223 33 42 chr1 96874497 96874858 -100320574 + ORR1D1 LTR MaLR 3 360 -14 5 1324 1451 223 72 91 chr1 96874866 96875404 -100320028 - RLTR11A LTR ERVK 0 528 1 5 1324 486 49 0 0 chr1 96875605 96875666 -100319766 + (TTG)n Simple_repeat Simple_repeat 2 62 0 5 1324 180 111 0 0 chr1 96875784 96875811 -100319621 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1324 427 335 61 35 chr1 96875862 96876091 -100319341 + MLT1D LTR MaLR 271 505 0 5 1324 631 157 93 73 chr1 96877000 96877151 -100318281 + Lx8 LINE L1 6776 6929 -544 5 1324 618 301 74 46 chr1 96877227 96877578 -100317854 + Lx8 LINE L1 7113 7473 0 5 1324 427 289 19 20 chr1 96877855 96877966 -100317466 - B1F SINE Alu -3 124 7 5 1324 688 234 49 7 chr1 96877977 96878119 -100317313 - B1_Mur1 SINE Alu 0 149 2 5 1324 645 214 75 13 chr1 96878707 96878891 -100316541 + B3 SINE B2 1 194 -1 5 1324 1479 265 44 13 chr1 96879293 96879679 -100315753 + MTC LTR MaLR 20 417 -4 5 1324 22 56 0 0 chr1 96880904 96880940 -100314492 + AT_rich Low_complexity Low_complexity 1 36 0 5 1324 655 246 84 20 chr1 96881331 96881534 -100313898 - B3 SINE B2 0 216 1 5 1324 358 245 43 0 chr1 96882009 96882103 -100313329 + Lx9 LINE L1 7537 7634 -10 5 1324 252 289 130 37 chr1 96882322 96882430 -100313002 + B3A SINE B2 3 120 -78 5 1324 1253 180 43 17 chr1 96883519 96883751 -100311681 + RMER19B LTR ERVK 665 902 0 5 1324 1052 83 0 0 chr1 96884682 96884815 -100310617 + B1_Mus1 SINE Alu 5 137 -11 5 1324 935 42 8 0 chr1 96884820 96884940 -100310492 + (GA)n Simple_repeat Simple_repeat 2 122 0 5 1324 261 0 0 0 chr1 96885150 96885179 -100310253 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1324 21 71 0 0 chr1 96888153 96888195 -100307237 + AT_rich Low_complexity Low_complexity 1 42 0 5 1324 34 0 0 0 chr1 96888240 96888274 -100307158 + AT_rich Low_complexity Low_complexity 1 34 0 5 1324 872 313 26 60 chr1 96888301 96888838 -100306594 - Lx9 LINE L1 -44 7600 7082 5 1324 21 0 0 0 chr1 96889075 96889096 -100306336 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 39 38 0 0 chr1 96889177 96889230 -100306202 + AT_rich Low_complexity Low_complexity 1 53 0 5 1324 1202 86 171 5 chr1 96889806 96890016 -100305416 - Lx LINE L1 -82 6572 6328 5 1324 911 329 59 12 chr1 96890024 96890365 -100305067 + MTEa LTR MaLR 14 370 -9 5 1324 21 0 0 0 chr1 96890529 96890550 -100304882 + AT_rich Low_complexity Low_complexity 1 21 0 5 1324 331 296 122 0 chr1 96891515 96891613 -100303819 + B3 SINE B2 103 212 -4 5 1324 24 32 0 0 chr1 96892259 96892290 -100303142 + AT_rich Low_complexity Low_complexity 1 31 0 5 1324 13169 210 59 11 chr1 96892375 96896862 -100298570 + MERVL_2A-int LTR ERVL 990 5690 -71 5 1324 1127 218 270 70 chr1 96897000 96897395 -100298037 + MT2A LTR ERVL 1 463 -70 5 1324 351 0 0 0 chr1 96897395 96897434 -100297998 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1324 1127 218 270 70 chr1 96897434 96897482 -100297950 + MT2A LTR ERVL 464 533 0 5 1324 1199 286 23 0 chr1 96897616 96897920 -100297512 + MTD LTR MaLR 1 311 -108 5 1324 1197 41 0 0 chr1 96897948 96898093 -100297339 - B1_Mm SINE Alu -1 146 2 5 1324 459 291 7 7 chr1 96898093 96898228 -100297204 + MTD LTR MaLR 287 421 0 5 1324 290 294 23 78 chr1 96898229 96898358 -100297074 + MTD-int LTR MaLR 2 123 -1247 5 1324 1927 232 42 7 chr1 96898350 96898775 -100296657 + MTD-int LTR MaLR 927 1366 -4 5 1324 522 308 0 0 chr1 96898779 96898925 -100296507 + MTD LTR MaLR 1 146 -228 5 1324 1704 267 66 2 chr1 96898935 96899423 -100296009 - Lx9 LINE L1 -235 7409 6891 5 1324 1861 116 25 13 chr1 96899685 96899999 -100295433 - L1Md_F2 LINE L1 0 6582 6265 5 1324 227 228 116 32 chr1 96900027 96900122 -100295310 + MTD LTR MaLR 241 343 -41 5 1324 198 0 0 0 chr1 96900134 96900156 -100295276 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 1324 233 116 23 0 chr1 96900197 96900240 -100295192 + MTD LTR MaLR 336 379 0 5 1324 992 274 15 98 chr1 96900473 96900882 -100294550 + MTE2b LTR MaLR 1 375 -4 6 1324 22 35 0 0 chr1 96901129 96901158 -100294274 + AT_rich Low_complexity Low_complexity 1 29 0 6 1324 24 91 0 0 chr1 96902184 96902250 -100293182 + AT_rich Low_complexity Low_complexity 1 66 0 6 1324 497 340 109 31 chr1 96902732 96903026 -100292406 - Lx8 LINE L1 0 7473 7157 6 1324 654 13 0 0 chr1 96903133 96903208 -100292224 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1324 2439 216 20 114 chr1 96903279 96903918 -100291514 - RMER19C LTR ERVK -32 579 1 6 1324 1105 320 35 43 chr1 96903920 96904430 -100291002 - Lx8 LINE L1 -570 6903 6398 6 1324 297 292 22 33 chr1 96905486 96905504 -100289928 - ID_B1 SINE B4 -128 96 6 6 1324 324 284 0 0 chr1 96905504 96905578 -100289854 - ID4 SINE ID -4 79 6 6 1324 378 82 82 0 chr1 96905869 96905954 -100289478 + (TCTCTG)n Simple_repeat Simple_repeat 2 93 0 6 1324 210 37 0 0 chr1 96905963 96905990 -100289442 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1324 1405 134 150 55 chr1 96906777 96907070 -100288362 + Lx3B LINE L1 6648 6968 -5 6 1324 26 30 0 0 chr1 96907080 96907113 -100288319 + AT_rich Low_complexity Low_complexity 1 33 0 6 1324 346 335 75 67 chr1 96907630 96907985 -100287447 + ORR1E LTR MaLR 1 346 -28 6 1324 257 218 64 0 chr1 96909315 96909393 -100286039 + L1M3 LINE L1 5506 5588 -703 6 1324 406 247 77 36 chr1 96909453 96909621 -100285811 + L1M3 LINE L1 5592 5766 -423 6 1324 21 36 0 0 chr1 96909642 96909670 -100285762 + AT_rich Low_complexity Low_complexity 1 28 0 6 1324 419 352 31 12 chr1 96910360 96910521 -100284911 - RSINE1 SINE B4 0 165 2 6 1324 477 0 0 0 chr1 96910528 96910581 -100284851 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1324 615 84 0 0 chr1 96910582 96910677 -100284755 + (GA)n Simple_repeat Simple_repeat 2 96 0 6 1324 450 0 0 0 chr1 96911028 96911078 -100284354 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1324 36 53 0 0 chr1 96911164 96911221 -100284211 + AT_rich Low_complexity Low_complexity 1 57 0 6 1324 189 288 17 17 chr1 96912237 96912297 -100283135 + MIRc SINE MIR 115 174 -94 6 1324 192 132 14 42 chr1 96912473 96912544 -100282888 + A-rich Low_complexity Low_complexity 2 70 0 6 1324 5671 86 38 13 chr1 96913801 96914628 -100280804 + Lx3_Mus LINE L1 6141 6987 -22 6 1324 185 190 0 49 chr1 96916773 96916834 -100278598 + (CACCAT)n Simple_repeat Simple_repeat 5 62 0 6 1324 26 64 0 0 chr1 96917432 96917479 -100277953 + AT_rich Low_complexity Low_complexity 1 47 0 6 1324 35 41 0 0 chr1 96917879 96917928 -100277504 + AT_rich Low_complexity Low_complexity 1 49 0 6 1324 506 315 47 68 chr1 96917960 96918151 -100277281 - B3A SINE B2 -2 196 10 6 1324 847 267 15 0 chr1 96918323 96918529 -100276903 + B3 SINE B2 3 211 -5 6 1324 431 293 43 8 chr1 96919476 96919593 -100275839 + ID_B1 SINE B4 96 216 -8 6 1324 229 191 0 0 chr1 96919650 96919697 -100275735 + GA-rich Low_complexity Low_complexity 1 47 0 6 1324 22 56 0 0 chr1 96919779 96919815 -100275617 + AT_rich Low_complexity Low_complexity 1 36 0 6 1324 21 0 0 0 chr1 96920148 96920169 -100275263 + AT_rich Low_complexity Low_complexity 1 21 0 6 1324 22 56 0 0 chr1 96921025 96921061 -100274371 + AT_rich Low_complexity Low_complexity 1 36 0 6 1324 366 23 0 0 chr1 96921882 96921925 -100273507 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1324 1062 237 49 21 chr1 96922108 96922392 -100273040 + Lx7 LINE L1 7405 7696 0 6 1324 3205 96 5 2 chr1 96922516 96922964 -100272468 - L1_Mm LINE L1 -181 5702 5254 6 1324 1393 94 35 0 chr1 96922969 96923172 -100272260 - L1_Mus1 LINE L1 -2 6565 6356 6 1324 4961 126 95 1 chr1 96923172 96924000 -100271432 + L1_Mus4 LINE L1 5731 6636 0 6 1324 264 91 0 0 chr1 96924009 96924053 -100271379 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1324 252 0 0 0 chr1 96924585 96924613 -100270819 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1324 1179 248 172 20 chr1 96925728 96926169 -100269263 - RMER5 LTR ERV1 -26 508 1 6 1324 903 89 0 0 chr1 96926413 96926548 -100268884 + (CA)n Simple_repeat Simple_repeat 2 136 0 6 1324 1577 279 29 16 chr1 96926549 96927033 -100268399 - Lx7 LINE L1 -389 7307 6818 6 1324 4464 35 5 14 chr1 96927524 96928077 -100267355 - L1Md_F3 LINE L1 0 6584 6037 6 1324 45 34 0 0 chr1 96928079 96928138 -100267294 + AT_rich Low_complexity Low_complexity 1 59 0 6 1324 2344 249 40 12 chr1 96928315 96928896 -100266536 + Lx6 LINE L1 6696 7292 -168 6 1324 216 0 0 0 chr1 96928906 96928930 -100266502 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 6 1324 326 55 40 40 chr1 96929050 96929125 -100266307 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 6 1324 312 343 10 10 chr1 96929210 96929310 -100266122 - B3 SINE B2 -87 129 30 6 1324 207 189 0 0 chr1 96929362 96929415 -100266017 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1324 960 148 27 27 chr1 96929924 96930112 -100265320 - Lx2 LINE L1 0 6997 6810 6 1324 3770 156 32 51 chr1 96930114 96931169 -100264263 - RLTR13D1 LTR ERVK -19 1004 1 6 1324 1279 99 34 0 chr1 96931169 96931370 -100264062 - Lx LINE L1 -178 6476 6264 6 1324 3774 65 42 12 chr1 96932727 96933224 -100262208 + RLTR1B LTR ERV1 1 512 0 6 1324 319 99 69 10 chr1 96933254 96933356 -100262076 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 1324 3172 62 12 0 chr1 96934106 96934522 -100260910 + BGLII LTR ERVK 1 421 0 6 1324 2148 238 95 109 chr1 96934736 96935722 -100259710 - RMER1B Other Other 0 1066 15 6 1324 1284 216 125 24 chr1 96935706 96936043 -100259389 - RMER1B Other Other -651 415 45 6 1324 419 0 0 19 chr1 96936620 96936672 -100258760 + (TTA)n Simple_repeat Simple_repeat 3 53 0 6 1324 2560 179 11 91 chr1 96936937 96937509 -100257923 + RLTR12B LTR ERVK 1 526 -2 6 1324 279 0 0 0 chr1 96937560 96937591 -100257841 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1324 267 91 0 22 chr1 96937666 96937711 -100257721 - Lx8 LINE L1 -1299 6174 6131 6 1324 2105 304 63 78 chr1 96937735 96938577 -100256855 + Lx7 LINE L1 6352 7197 -499 6 1324 3648 142 35 0 chr1 96938577 96939169 -100256263 - Lx2 LINE L1 0 6997 6385 6 1324 2105 304 63 78 chr1 96939169 96939289 -100256143 + Lx7 LINE L1 7198 7300 -396 6 1324 239 278 50 66 chr1 96939793 96939974 -100255458 + RLTR21 LTR ERVK 1074 1251 -321 6 1324 206 98 0 47 chr1 96939981 96940024 -100255408 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 6 1324 341 260 54 70 chr1 96940028 96940214 -100255218 + Lx7 LINE L1 7514 7696 0 6 1324 24 32 0 0 chr1 96940328 96940359 -100255073 + AT_rich Low_complexity Low_complexity 1 31 0 6 1324 225 0 0 0 chr1 96941895 96941920 -100253512 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1324 325 203 14 14 chr1 96941968 96942038 -100253394 - Lx9 LINE L1 -391 7253 7184 6 1324 899 41 25 0 chr1 96942038 96942159 -100253273 + ORR1A1 LTR MaLR 1 124 -222 6 1324 1775 212 39 0 chr1 96942161 96942524 -100252908 - Lx9 LINE L1 -817 6827 6451 6 1324 919 224 127 12 chr1 96942526 96942948 -100252484 - L1_Rod LINE L1 -4288 1559 1090 6 1324 780 311 84 6 chr1 96942936 96943114 -100252318 - L1_Rod LINE L1 -6629 979 787 6 1324 419 0 20 0 chr1 96943114 96943165 -100252267 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1324 780 321 175 4 chr1 96943165 96943400 -100252032 - L1_Rod LINE L1 -6822 786 513 6 1324 254 324 38 119 chr1 96943652 96943862 -100251570 - B3A SINE B2 -5 193 1 6 1324 324 310 99 55 chr1 96944734 96944915 -100250517 + MLT1B LTR MaLR 1 189 -201 6 1324 25 0 0 0 chr1 96945539 96945564 -100249868 + AT_rich Low_complexity Low_complexity 1 25 0 6 1324 468 0 0 0 chr1 96946254 96946306 -100249126 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1324 21 82 0 0 chr1 96946344 96946393 -100249039 + AT_rich Low_complexity Low_complexity 1 49 0 6 1324 324 312 14 7 chr1 96946434 96946576 -100248856 - L1_Mur2 LINE L1 -3094 2783 2641 6 1324 9182 135 15 5 chr1 96946657 96948935 -100246497 + L1Md_A LINE L1 446 2688 -1226 6 1324 384 167 0 0 chr1 96948938 96949022 -100246410 + L1_Mus3 LINE L1 6554 6637 -1 6 1324 270 338 26 39 chr1 96949034 96949188 -100246244 + Lx9 LINE L1 6300 6451 -1193 6 1324 1564 189 6 36 chr1 96949693 96950028 -100245404 - ORR1A4 LTR MaLR -4 325 1 6 1324 22 70 0 0 chr1 96950690 96950733 -100244699 + AT_rich Low_complexity Low_complexity 1 43 0 6 1324 313 325 73 6 chr1 96953577 96953741 -100241691 - L1MCb LINE L1 -4853 1192 1018 6 1324 250 62 0 0 chr1 96953871 96953903 -100241529 - IAPLTR2b LTR ERVK -295 32 1 6 1324 2229 235 132 40 chr1 96955028 96955174 -100240258 - RMER19B LTR ERVK -23 879 705 6 1324 189 0 0 0 chr1 96955174 96955195 -100240237 + (CAG)n Simple_repeat Simple_repeat 2 22 0 6 1324 2229 235 132 40 chr1 96955195 96955849 -100239583 - RMER19B LTR ERVK -198 704 7 6 1324 1125 301 6 57 chr1 96956298 96956633 -100238799 - ORR1D2 LTR MaLR -2 368 51 6 1324 238 431 43 2 chr1 96956632 96956798 -100238634 - ORR1A4-int LTR MaLR -622 958 681 6 1324 441 0 0 0 chr1 96956798 96956847 -100238585 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1324 1039 88 0 0 chr1 96956847 96956984 -100238448 - B1_Mus2 SINE Alu -10 137 1 6 1324 7365 78 3 14 chr1 96957032 96958162 -100237270 - L1_Mus2 LINE L1 -1 6565 5447 6 1324 1895 226 62 46 chr1 96958164 96959086 -100236346 - ORR1A4-int LTR MaLR -721 649 1 6 1324 1145 301 14 5 chr1 96959158 96959525 -100235907 - ORR1D2 LTR MaLR 0 370 1 6 1324 211 139 23 0 chr1 96960101 96960144 -100235288 + T-rich Low_complexity Low_complexity 5 48 0 6 1324 1169 108 5 89 chr1 96960153 96960366 -100235066 - L1_Mus2 LINE L1 0 6566 6372 6 1324 890 279 16 44 chr1 96960454 96960702 -100234730 + Lx5 LINE L1 6803 7043 -7 6 1324 283 261 71 14 chr1 96960724 96960864 -100234568 - RCHARR1 DNA MER1_type -79 895 748 6 1324 1827 112 31 25 chr1 96961186 96961506 -100233926 + RLTRETN_Mm LTR ERVK 1 322 0 6 1324 477 0 0 0 chr1 96962187 96962240 -100233192 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1324 354 23 0 0 chr1 96963087 96963130 -100232302 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1324 25 51 0 0 chr1 96963502 96963541 -100231891 + AT_rich Low_complexity Low_complexity 1 39 0 7 1324 878 170 123 52 chr1 96964826 96965037 -100230395 - URR1A DNA MER1_type 0 226 1 7 1324 216 67 0 0 chr1 96965070 96965100 -100230332 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1324 23 0 0 0 chr1 96967518 96967541 -100227891 + AT_rich Low_complexity Low_complexity 1 23 0 7 1324 2240 64 0 0 chr1 96967967 96968247 -100227185 - L1_Mus1 LINE L1 -202 6365 6086 7 1324 1252 84 0 6 chr1 96968247 96968427 -100227005 + L1_Mus1 LINE L1 6389 6567 0 7 1324 7943 87 50 3 chr1 96968819 96968956 -100226476 + Lx3_Mus LINE L1 5772 5914 -1095 7 1324 867 53 0 0 chr1 96968956 96969069 -100226363 + (GA)n Simple_repeat Simple_repeat 2 114 0 7 1324 7943 87 50 3 chr1 96969069 96969174 -100226258 + Lx3_Mus LINE L1 5915 6032 -977 7 1324 189 0 0 0 chr1 96969174 96969195 -100226237 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 7 1324 7943 87 50 3 chr1 96969195 96970122 -100225310 + Lx3_Mus LINE L1 6033 6995 -14 7 1324 501 17 0 0 chr1 96970128 96970186 -100225246 + (GAAAA)n Simple_repeat Simple_repeat 4 61 0 7 1324 185 65 0 31 chr1 96970564 96970596 -100224836 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 7 1324 599 309 107 81 chr1 96971222 96971606 -100223826 - MLT1C LTR MaLR -38 429 36 7 1324 787 321 65 32 chr1 96971640 96971949 -100223483 - MLT1C-int LTR MaLR -16 1355 1037 7 1324 2972 86 28 2 chr1 96972398 96972795 -100222637 + MTB_Mm LTR MaLR 1 407 0 7 1324 234 0 0 0 chr1 96972873 96972899 -100222533 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1324 299 202 71 27 chr1 96973001 96973113 -100222319 - Lx9 LINE L1 -8 7636 7520 7 1324 314 306 24 16 chr1 96973169 96973292 -100222140 - MLT1C-int LTR MaLR -1231 140 17 7 1324 379 270 45 9 chr1 96973297 96973409 -100222023 - MLT1C LTR MaLR -5 462 347 7 1324 628 275 161 0 chr1 96973482 96973693 -100221739 - ORR1D2 LTR MaLR 0 370 126 7 1324 1746 322 68 45 chr1 96973992 96974909 -100220523 + Lx9 LINE L1 6487 7424 -220 7 1324 198 0 0 0 chr1 96975718 96975740 -100219692 + (TTG)n Simple_repeat Simple_repeat 3 24 0 7 1324 284 383 19 0 chr1 96976360 96976522 -100218910 + L1_Rod LINE L1 80 244 -6928 7 1324 198 0 0 0 chr1 96976527 96976549 -100218883 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1324 5248 167 113 8 chr1 96976549 96977601 -100217831 + Lx4A LINE L1 5893 7055 -3 7 1324 185 315 94 67 chr1 96977719 96977899 -100217533 - L2 LINE L2 -1812 1607 1423 7 1324 256 333 11 0 chr1 96977950 96978037 -100217395 - L2a LINE L2 0 3426 3339 7 1324 393 58 0 0 chr1 96978614 96978666 -100216766 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 7 1324 267 283 0 0 chr1 96978740 96978800 -100216632 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 7 1324 437 226 50 6 chr1 96978960 96979120 -100216312 - Lx9 LINE L1 -1 7643 7477 7 1324 295 153 13 40 chr1 96979141 96979216 -100216216 - Lx9 LINE L1 -131 7513 7441 7 1324 537 16 0 0 chr1 96979285 96979347 -100216085 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1324 1633 185 7 17 chr1 96980099 96980401 -100215031 - L1_Mur2 LINE L1 -126 5751 5453 7 1324 1720 75 2 15 chr1 96980385 96980629 -100214803 + L1_Mm LINE L1 5436 5673 -210 7 1324 697 278 61 36 chr1 96980962 96981291 -100214141 - RLTR15 LTR ERVK -21 338 2 7 1324 30 45 0 0 chr1 96981361 96981405 -100214027 + AT_rich Low_complexity Low_complexity 1 44 0 7 1324 651 320 5 10 chr1 96982118 96982314 -100213118 + Lx8 LINE L1 6520 6714 -759 7 1324 1119 77 0 0 chr1 96982317 96982460 -100212972 + B1_Mm SINE Alu 1 143 -4 7 1324 495 0 0 0 chr1 96982463 96982518 -100212914 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1324 546 57 0 0 chr1 96982782 96982852 -100212580 + (TTA)n Simple_repeat Simple_repeat 2 71 0 7 1324 852 145 0 35 chr1 96982852 96982995 -100212437 - B1_Mus1 SINE Alu -9 139 2 7 1324 20144 120 19 17 chr1 96983244 96984564 -100210868 - L1_Mus4 LINE L1 -2 6634 5314 7 1324 5100 108 0 15 chr1 96984564 96985309 -100210123 - L1_Mus1 LINE L1 0 6567 5834 7 1324 20144 153 15 74 chr1 96985309 96987166 -100208266 - L1_Mus4 LINE L1 -570 5313 3549 7 1324 1022 116 0 0 chr1 96987166 96987312 -100208120 + RMER17A LTR ERVK 121 266 -485 7 1324 213 39 0 0 chr1 96987312 96987338 -100208094 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 1324 1403 78 5 0 chr1 96987338 96987530 -100207902 - L1_Mus1 LINE L1 -3 6564 6372 7 1324 20144 153 15 74 chr1 96987530 96989111 -100206321 - L1_Mus4 LINE L1 -2335 3548 1958 7 1324 3624 203 21 18 chr1 96989111 96989900 -100205532 - L1VL4 LINE L1 -5318 984 193 7 1324 883 80 14 0 chr1 96989975 96990113 -100205319 - L1Md_T LINE L1 0 6582 6443 7 1324 3175 49 0 0 chr1 96990113 96990502 -100204930 - L1Md_T LINE L1 -325 6257 5869 7 1324 1873 36 0 13 chr1 96990496 96990721 -100204711 - L1Md_F2 LINE L1 -348 6234 6013 7 1324 234 0 0 0 chr1 96992398 96992424 -100203008 + (T)n Simple_repeat Simple_repeat 1 26 0 7 165 1481 251 18 9 chr1 96992958 96993295 -100202137 - Lx6 LINE L1 -2 7458 7119 7 1325 420 218 0 0 chr1 96993300 96993474 -100201958 + (TA)n Simple_repeat Simple_repeat 2 175 0 7 1325 473 231 0 0 chr1 96993480 96993571 -100201861 - Lx6 LINE L1 -381 7079 6989 7 1325 1908 223 90 14 chr1 96993584 96994029 -100201403 - RMER1C Other Other -12 1330 852 7 1325 380 232 0 0 chr1 96995037 96995119 -100200313 + MTD LTR MaLR 3 84 -335 7 1325 1358 221 89 25 chr1 96995123 96995481 -100199951 + Lx9 LINE L1 7088 7468 -176 7 1325 27 103 0 0 chr1 96995958 96996055 -100199377 + AT_rich Low_complexity Low_complexity 1 97 0 7 1325 21 0 0 0 chr1 96996104 96996125 -100199307 + AT_rich Low_complexity Low_complexity 1 21 0 7 1325 24 0 0 0 chr1 96996668 96996692 -100198740 + AT_rich Low_complexity Low_complexity 1 24 0 7 1325 2077 187 134 15 chr1 96996744 96997266 -100198166 + RLTR31A_Mm LTR ERVK 1 584 0 7 1325 428 325 53 45 chr1 96997504 96997749 -100197683 + ORR1E LTR MaLR 2 248 -111 7 1325 1485 375 18 25 chr1 96997855 96998509 -100196923 + MTE-int LTR MaLR 37 686 -894 7 1325 928 366 143 21 chr1 96998521 96998819 -100196613 + MTE-int LTR MaLR 752 1108 -472 7 1325 4733 30 11 0 chr1 96998819 96999389 -100196043 + L1Md_F3 LINE L1 6008 6583 -1 7 1325 928 366 143 21 chr1 96999389 96999789 -100195643 + MTE-int LTR MaLR 1109 1534 -46 7 1325 507 217 40 50 chr1 97000006 97000164 -100195268 + MTEa LTR MaLR 209 377 -2 1 1325 3121 111 14 35 chr1 97001076 97001561 -100193871 + MT2C_Mm LTR ERVL 1 475 0 2 1325 273 211 56 0 chr1 97001753 97001824 -100193608 - L1MA9 LINE L1 -1 6311 6237 3 1325 384 301 24 0 chr1 97001953 97002076 -100193356 - RMER5 LTR ERV1 -30 504 379 4 1325 570 296 19 12 chr1 97002117 97002278 -100193154 - Lx7 LINE L1 -960 6736 6575 5 1325 547 169 62 2 chr1 97002547 97002676 -100192756 + MT2C_Mm LTR ERVL 360 569 -15 6 1325 2338 75 7 0 chr1 97002857 97003163 -100192269 - L1_Mus1 LINE L1 -1 6566 6259 7 1325 3609 62 6 0 chr1 97003163 97003631 -100191801 + L1_Mus1 LINE L1 5619 6089 -478 7 1325 214 241 0 0 chr1 97003729 97003783 -100191649 + CT-rich Low_complexity Low_complexity 2 55 0 8 1325 254 372 70 50 chr1 97004943 97005144 -100190288 + ID_B1 SINE B4 1 205 -19 9 1325 470 280 91 27 chr1 97005687 97005907 -100189525 - MLT2B4 LTR ERVL -56 500 267 1 1325 215 143 61 0 chr1 97006473 97006522 -100188910 + CT-rich Low_complexity Low_complexity 3 54 0 1 1325 306 0 0 0 chr1 97006552 97006586 -100188846 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1325 411 100 0 0 chr1 97006586 97006656 -100188776 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1325 249 274 85 46 chr1 97006715 97006845 -100188587 + MLT1H LTR MaLR 415 549 0 1 1325 2181 126 15 3 chr1 97008517 97008851 -100186581 + ORR1A1 LTR MaLR 1 338 -8 1 1325 3571 53 13 13 chr1 97008956 97009417 -100186015 - L1_Mus1 LINE L1 0 6567 6107 1 1325 9451 159 72 85 chr1 97009544 97009632 -100185800 - L1_Mur2 LINE L1 -1157 4720 4627 1 1325 252 0 0 0 chr1 97009632 97009660 -100185772 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1325 9451 159 72 85 chr1 97009660 97010231 -100185201 - L1_Mur2 LINE L1 -1251 4626 4018 1 1325 972 92 49 0 chr1 97010231 97010373 -100185059 - B2_Mm2 SINE B2 -43 152 4 1 1325 9451 159 72 85 chr1 97010373 97010841 -100184591 - L1_Mur2 LINE L1 -1251 4017 3517 1 1325 5284 36 5 0 chr1 97010841 97011478 -100183954 + L1Md_A LINE L1 5943 6582 0 2 1325 9451 159 72 85 chr1 97011478 97011628 -100183804 - L1_Mur2 LINE L1 -2361 3516 3370 1 1325 2459 66 0 0 chr1 97011628 97011948 -100183484 + L1Md_F2 LINE L1 6251 6570 -12 2 1325 9451 159 72 85 chr1 97011948 97012043 -100183389 - L1_Mur2 LINE L1 -2508 3369 3261 1 1325 582 15 0 0 chr1 97012043 97012110 -100183322 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 2 1325 9451 159 72 85 chr1 97012110 97012831 -100182601 - L1_Mur2 LINE L1 -2617 3260 2516 1 1325 3116 128 8 6 chr1 97012829 97013339 -100182093 + Lx4B LINE L1 4755 5265 -612 2 1325 1106 155 16 0 chr1 97013330 97013517 -100181915 + Lx4B LINE L1 6368 6557 -501 2 1325 786 238 62 58 chr1 97013512 97013753 -100181679 + Lx4B LINE L1 6799 7040 -18 2 1325 300 53 0 0 chr1 97013753 97013791 -100181641 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1325 6320 163 49 26 chr1 97013794 97015279 -100180153 + Lx4B LINE L1 5287 6804 -254 2 1325 447 268 14 28 chr1 97015276 97015418 -100180014 + Lx4B LINE L1 6915 7054 -4 2 1325 240 35 0 0 chr1 97015420 97015449 -100179983 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2 1325 855 76 14 20 chr1 97015685 97015832 -100179600 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 2 1325 270 56 0 0 chr1 97017970 97018006 -100177426 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 2 1325 234 0 0 0 chr1 97018168 97018194 -100177238 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1325 518 35 35 12 chr1 97018918 97019004 -100176428 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1325 279 263 190 63 chr1 97019341 97019483 -100175949 + RMER2 LTR ERV1 300 459 -108 3 1325 233 388 45 13 chr1 97020480 97020634 -100174798 + RSINE1 SINE B4 6 164 -1 3 1325 25 31 0 0 chr1 97021481 97021513 -100173919 + AT_rich Low_complexity Low_complexity 1 32 0 3 1325 34405 79 7 11 chr1 97021857 97027995 -100167437 - L1Md_F2 LINE L1 0 6582 489 3 1325 209 155 17 0 chr1 97028146 97028204 -100167228 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1325 1080 90 0 0 chr1 97028297 97028442 -100166990 - B1_Mus1 SINE Alu -2 146 2 3 1325 24 0 0 0 chr1 97028816 97028840 -100166592 + AT_rich Low_complexity Low_complexity 1 24 0 3 1325 339 130 0 0 chr1 97028957 97029011 -100166421 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1325 30 0 0 0 chr1 97030017 97030047 -100165385 + AT_rich Low_complexity Low_complexity 1 30 0 3 1325 896 221 11 27 chr1 97030318 97030504 -100164928 - BGLII_B LTR ERVK 0 441 259 4 1325 414 0 0 0 chr1 97030599 97030645 -100164787 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1325 378 0 0 0 chr1 97030645 97030686 -100164746 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1325 22 35 0 0 chr1 97031192 97031221 -100164211 + AT_rich Low_complexity Low_complexity 1 29 0 4 1325 32 0 0 0 chr1 97031297 97031329 -100164103 + AT_rich Low_complexity Low_complexity 1 32 0 4 1325 7025 147 39 46 chr1 97031859 97033181 -100162251 + Lx3B LINE L1 5687 6969 -4 4 1325 2726 176 13 13 chr1 97033513 97034041 -100161391 + RLTR11A LTR ERVK 1 528 0 4 1325 218 268 0 0 chr1 97034984 97035055 -100160377 + T-rich Low_complexity Low_complexity 1 71 0 4 1325 1407 142 0 9 chr1 97035667 97035888 -100159544 + Lx5 LINE L1 6201 6419 -631 4 1325 1244 240 85 4 chr1 97035987 97036259 -100159173 + ORR1B1 LTR MaLR 1 294 -100 4 1325 334 289 29 0 chr1 97037240 97037344 -100158088 - B4A SINE B4 0 292 186 5 1325 935 186 92 26 chr1 97037748 97038051 -100157381 - Lx9 LINE L1 -8 7636 7314 5 1325 2142 105 45 0 chr1 97038051 97038364 -100157068 - ORR1A2 LTR MaLR 0 327 1 5 1325 7649 64 19 3 chr1 97038373 97039585 -100155847 + L1_Mus1 LINE L1 5330 6565 -2 5 1325 1590 240 77 21 chr1 97039606 97039741 -100155691 - Lx9 LINE L1 -341 7303 7173 5 1325 396 0 0 0 chr1 97039741 97039785 -100155647 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1325 1590 240 77 21 chr1 97039785 97040114 -100155318 - Lx9 LINE L1 -472 7172 6815 5 1325 201 260 0 0 chr1 97041073 97041123 -100154309 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 5 1325 24 67 0 0 chr1 97041131 97041176 -100154256 + AT_rich Low_complexity Low_complexity 1 45 0 5 1325 1487 22 6 0 chr1 97041326 97041505 -100153927 - MTA_Mm LTR MaLR 0 396 217 5 1325 8864 9 0 0 chr1 97041515 97042645 -100152787 - L1Md_A LINE L1 0 6582 5453 5 1325 1804 39 0 17 chr1 97042652 97042888 -100152544 - MTA_Mm LTR MaLR -164 232 1 5 1325 1031 72 72 0 chr1 97043928 97044066 -100151366 - B1_Mus1 SINE Alu 0 148 1 5 1325 825 152 0 33 chr1 97044066 97044216 -100151216 - B2_Mm2 SINE B2 0 195 51 6 1325 459 0 0 0 chr1 97044335 97044386 -100151046 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1325 315 132 0 0 chr1 97044448 97044516 -100150916 + (T)n Simple_repeat Simple_repeat 1 68 0 6 1325 8107 48 1 2 chr1 97044560 97045557 -100149875 - L1Md_F2 LINE L1 0 6582 5587 6 1325 9253 38 55 0 chr1 97045559 97046721 -100148711 + L1Md_F2 LINE L1 4339 5564 -319 6 1325 328 325 21 26 chr1 97046960 97047155 -100148277 - L1M2 LINE L1 -787 5513 5322 6 1325 222 37 0 0 chr1 97047170 97047197 -100148235 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1325 405 0 0 0 chr1 97047199 97047244 -100148188 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1325 206 121 0 0 chr1 97047596 97047629 -100147803 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 1325 1163 68 0 0 chr1 97047629 97047775 -100147657 - B1_Mus2 SINE Alu 0 147 2 6 1325 519 254 40 16 chr1 97047882 97048006 -100147426 + B1_Mur2 SINE Alu 16 142 -7 6 1325 21 36 0 0 chr1 97048006 97048034 -100147398 + AT_rich Low_complexity Low_complexity 1 28 0 6 1325 34811 76 4 10 chr1 97048370 97054680 -100140752 - L1Md_F2 LINE L1 -7 6575 304 7 1325 26 50 0 0 chr1 97055178 97055218 -100140214 + AT_rich Low_complexity Low_complexity 1 40 0 7 1325 21 36 0 0 chr1 97057172 97057200 -100138232 + AT_rich Low_complexity Low_complexity 1 28 0 7 1325 237 65 0 0 chr1 97057475 97057506 -100137926 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 7 1325 26 64 0 0 chr1 97057534 97057581 -100137851 + AT_rich Low_complexity Low_complexity 1 47 0 7 1325 969 76 0 0 chr1 97057746 97057877 -100137555 + (GA)n Simple_repeat Simple_repeat 2 132 0 7 1325 6563 138 28 4 chr1 97058459 97059525 -100135907 - Lx LINE L1 -2 6652 5587 7 1325 2470 146 33 46 chr1 97059524 97060005 -100135427 + L1_Mur2 LINE L1 4313 4787 -1090 7 1325 698 95 14 0 chr1 97059985 97060087 -100135345 - Lx LINE L1 -670 5213 5099 7 1325 733 105 0 8 chr1 97060089 97060214 -100135218 + L1Md_F2 LINE L1 6456 6579 -3 7 1325 1722 115 0 0 chr1 97060214 97060466 -100134966 + L1_Mm LINE L1 5286 5537 -346 7 1325 1849 143 20 38 chr1 97060466 97060808 -100134624 - Lx3C LINE L1 -2 6974 6639 8 1325 894 194 278 12 chr1 97060809 97061059 -100134373 - RMER20B LTR ERVK -310 317 1 8 1325 473 232 21 42 chr1 97061108 97061252 -100134180 - L1_Rod LINE L1 -246 5601 5461 8 1325 2089 136 50 22 chr1 97061285 97061685 -100133747 + BGLII_B LTR ERVK 30 440 -1 8 1325 22 0 0 0 chr1 97061718 97061740 -100133692 + AT_rich Low_complexity Low_complexity 1 22 0 8 1325 482 70 14 0 chr1 97061750 97061821 -100133611 + (TATG)n Simple_repeat Simple_repeat 1 72 0 8 1325 4154 56 37 0 chr1 97062546 97063081 -100132351 + L1_Mus1 LINE L1 6013 6567 0 8 1325 223 270 0 0 chr1 97063289 97063352 -100132080 + T-rich Low_complexity Low_complexity 1 63 0 8 1325 272 327 101 32 chr1 97063685 97063843 -100131589 - MER5B DNA MER1_type 0 178 10 8 1325 21 57 0 0 chr1 97064221 97064256 -100131176 + AT_rich Low_complexity Low_complexity 1 35 0 8 1325 273 336 114 43 chr1 97064377 97064517 -100130915 + RSINE1 SINE B4 3 152 -13 9 1325 515 16 16 0 chr1 97064527 97064591 -100130841 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1325 24 0 0 0 chr1 97064615 97064639 -100130793 + AT_rich Low_complexity Low_complexity 1 24 0 9 1325 1318 113 0 5 chr1 97064688 97064884 -100130548 - B2_Mm2 SINE B2 0 195 1 9 1325 1456 242 55 79 chr1 97065355 97065459 -100129973 - RLTR28B LTR ERVL -36 445 359 9 1325 2299 69 119 11 chr1 97065459 97065811 -100129621 + RLTR10 LTR ERVK 1 390 0 9 1325 1456 242 55 79 chr1 97065811 97066160 -100129272 - RLTR28B LTR ERVL -123 358 3 9 1325 2605 191 24 39 chr1 97066199 97066737 -100128695 + Lx4B LINE L1 6515 7044 -14 9 1325 417 39 0 0 chr1 97066742 97066793 -100128639 + (CATA)n Simple_repeat Simple_repeat 4 54 0 9 1325 23 112 0 0 chr1 97066933 97067040 -100128392 + AT_rich Low_complexity Low_complexity 1 107 0 9 1325 293 300 13 52 chr1 97067913 97068052 -100127380 - ID4 SINE ID -18 134 2 9 1325 1942 263 80 23 chr1 97068272 97068919 -100126513 + Lx9 LINE L1 6954 7637 -7 1 1325 429 182 289 0 chr1 97068919 97069040 -100126392 + Lx6 LINE L1 7294 7449 -11 1 1325 1119 97 0 0 chr1 97070081 97070226 -100125206 + B1_Mm SINE Alu 2 146 -1 1 1325 378 0 0 0 chr1 97070622 97070664 -100124768 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1325 467 171 171 0 chr1 97071409 97071520 -100123912 + Lx9 LINE L1 5377 5506 -341 1 1325 697 287 52 32 chr1 97071507 97071921 -100123511 + Lx9 LINE L1 5626 6096 -1548 1 1325 4141 251 44 34 chr1 97071981 97073143 -100122289 + Lx9 LINE L1 6321 7498 -146 1 1325 3068 71 5 2 chr1 97073143 97073538 -100121894 - MTA_Mm LTR MaLR 0 396 1 1 1325 4141 251 44 34 chr1 97073538 97073560 -100121872 + Lx9 LINE L1 7499 7517 -127 1 1325 403 200 46 8 chr1 97073602 97073733 -100121699 + Lx9 LINE L1 7485 7620 -24 1 1325 198 103 0 0 chr1 97073738 97073767 -100121665 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1325 277 257 49 22 chr1 97073876 97074070 -100121362 - L1MD LINE L1 -747 5495 5293 1 1325 980 282 62 100 chr1 97074277 97074729 -100120703 - RMER5 LTR ERV1 -35 499 65 1 1325 2088 133 55 20 chr1 97074731 97075076 -100120356 + ORR1B2 LTR MaLR 3 359 -8 1 1325 275 220 17 0 chr1 97075077 97075136 -100120296 - RMER5 LTR ERV1 -462 72 13 1 1325 1216 258 87 18 chr1 97075280 97075615 -100119817 + MTD LTR MaLR 62 419 0 1 1325 225 245 145 86 chr1 97076021 97076173 -100119259 + RLTR13D4 LTR ERVK 597 757 -276 1 1325 282 149 0 0 chr1 97076173 97076220 -100119212 - Lx2B LINE L1 -987 6013 5967 1 1325 2350 172 8 5 chr1 97076804 97077206 -100118226 - Lx5 LINE L1 -467 6583 6181 1 1325 1738 196 46 105 chr1 97077225 97077544 -100117888 + Lx4B LINE L1 6591 6922 -136 1 1325 483 33 0 0 chr1 97077544 97077605 -100117827 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1325 1738 196 46 105 chr1 97077605 97077782 -100117650 + Lx4B LINE L1 6923 7058 0 1 1325 29 60 0 0 chr1 97078973 97079023 -100116409 + AT_rich Low_complexity Low_complexity 1 50 0 1 1325 282 200 70 13 chr1 97079024 97079181 -100116251 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 1325 1131 75 0 14 chr1 97079272 97079420 -100116012 + B1_Mus1 SINE Alu 3 148 0 1 1325 7203 32 1 0 chr1 97079869 97080716 -100114716 - L1Md_F2 LINE L1 -8 6574 5727 1 1325 275 231 15 0 chr1 97080801 97080866 -100114566 + RMER12 LTR ERVK 1 66 -1256 1 1325 449 28 54 54 chr1 97080881 97080993 -100114439 + (TTTTG)n Simple_repeat Simple_repeat 4 115 0 1 1325 3103 201 11 75 chr1 97080998 97081742 -100113690 + RMER12 LTR ERVK 70 765 -557 1 1325 378 0 0 0 chr1 97081742 97081784 -100113648 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1325 831 265 100 40 chr1 97081784 97082101 -100113331 + RMER12 LTR ERVK 997 1571 -1 1 1325 448 301 107 14 chr1 97082392 97082682 -100112750 - Cheshire DNA MER1_type -669 1751 1435 1 1325 1471 241 73 16 chr1 97083350 97083734 -100111698 + L1_Mur3 LINE L1 508 913 -6799 1 1325 1576 241 98 34 chr1 97083734 97084263 -100111169 - RLTR20B3 LTR ERVK -9 568 6 1 1325 1243 199 43 18 chr1 97084263 97084539 -100110893 + L1_Mur3 LINE L1 919 1201 -6511 1 1325 3825 170 18 74 chr1 97084606 97084627 -100110805 - L1_Mur3 LINE L1 -3797 2083 2067 1 1325 438 20 0 0 chr1 97084627 97084678 -100110754 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1325 3825 178 22 70 chr1 97084678 97085668 -100109764 - L1_Mur3 LINE L1 -3814 2066 1110 1 1325 186 43 0 0 chr1 97085668 97085691 -100109741 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1325 842 267 71 26 chr1 97085691 97085819 -100109613 - L1_Mur3 LINE L1 -5977 1109 979 1 1325 1031 275 30 30 chr1 97085838 97086172 -100109260 - L1_Mur3 LINE L1 -7332 396 63 1 1325 4769 259 70 30 chr1 97086565 97087948 -100107484 + Lx6 LINE L1 6019 7456 -4 1 1325 26 88 0 0 chr1 97089089 97089157 -100106275 + AT_rich Low_complexity Low_complexity 1 68 0 1 1325 423 0 0 0 chr1 97089173 97089220 -100106212 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1325 646 173 0 0 chr1 97089945 97090049 -100105383 + Lx8 LINE L1 6810 6913 -560 1 1325 264 59 0 0 chr1 97090666 97090700 -100104732 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1325 514 324 71 39 chr1 97091115 97091369 -100104063 - Lx8 LINE L1 -164 7309 7048 1 1325 384 313 73 44 chr1 97091419 97091693 -100103739 - L1MDa LINE L1 -4892 1741 1460 1 1325 470 299 99 35 chr1 97091712 97091913 -100103519 - B3A SINE B2 -2 214 1 1 1325 489 299 102 7 chr1 97092109 97092412 -100103020 - Lx9 LINE L1 -8 7636 7305 1 1325 36 0 0 0 chr1 97092621 97092657 -100102775 + AT_rich Low_complexity Low_complexity 1 36 0 1 1325 7281 121 17 106 chr1 97092964 97094881 -100100551 - L1_Mus4 LINE L1 -27 6609 4929 1 1325 22 0 0 0 chr1 97094932 97094954 -100100478 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 1056 231 150 0 chr1 97095014 97095387 -100100045 - Lx9 LINE L1 -1 7643 7215 1 1325 399 200 32 0 chr1 97095418 97095513 -100099919 - Lx9 LINE L1 -24 7620 7523 1 1325 243 259 0 65 chr1 97095523 97095585 -100099847 - Lx9 LINE L1 -432 7212 7155 1 1325 1127 54 0 26 chr1 97095642 97095793 -100099639 + B1_Mus1 SINE Alu 1 147 -1 1 1325 646 318 50 25 chr1 97097308 97097547 -100097885 - Lx8 LINE L1 -296 7177 6933 1 1325 260 400 40 7 chr1 97097802 97097953 -100097479 - MTD LTR MaLR 0 419 264 1 1325 905 282 36 36 chr1 97098408 97098739 -100096693 + MTE-int LTR MaLR 67 397 -1183 1 1325 891 291 145 56 chr1 97098751 97099273 -100096159 + MTE-int LTR MaLR 543 1296 -284 1 1325 450 0 0 0 chr1 97099273 97099323 -100096109 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1325 876 284 81 110 chr1 97099323 97099494 -100095938 + MTE-int LTR MaLR 1297 1446 -134 1 1325 1382 33 17 6 chr1 97099494 97099675 -100095757 + L1Md_F3 LINE L1 6388 6570 -14 1 1325 876 284 81 110 chr1 97099675 97099795 -100095637 + MTE-int LTR MaLR 1447 1570 -10 1 1325 1258 279 33 7 chr1 97099832 97100139 -100095293 + MTE2b LTR MaLR 65 379 0 1 1325 805 190 0 17 chr1 97102179 97102415 -100093017 + GA-rich Low_complexity Low_complexity 1 231 0 1 1325 22 0 0 0 chr1 97102608 97102630 -100092802 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 2879 96 5 2 chr1 97102630 97103036 -100092396 - L1_Mus3 LINE L1 -9 6629 6223 1 1325 32 57 0 0 chr1 97103948 97104001 -100091431 + AT_rich Low_complexity Low_complexity 1 53 0 1 1325 31 0 0 60 chr1 97104231 97104281 -100091151 + AT_rich Low_complexity Low_complexity 1 47 0 1 1325 841 318 62 107 chr1 97104283 97104303 -100091129 - Lx6 LINE L1 0 7460 7441 1 1325 2580 58 9 11 chr1 97104303 97104651 -100090781 - L1Md_F2 LINE L1 0 6582 6236 1 1325 841 318 62 107 chr1 97104651 97105198 -100090234 - Lx6 LINE L1 -20 7440 6920 1 1325 842 74 0 8 chr1 97105198 97105321 -100090111 + L1_Mus2 LINE L1 6444 6565 -1 1 1325 198 0 0 0 chr1 97105348 97105370 -100090062 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1 1325 3846 174 77 25 chr1 97105395 97106244 -100089188 - L1_Mur3 LINE L1 -2570 3310 2418 1 1325 434 133 13 0 chr1 97106251 97106326 -100089106 + L1_Mur3 LINE L1 2244 2319 -3561 1 1325 312 105 69 17 chr1 97108520 97108578 -100086854 + Lx9 LINE L1 6973 7033 -611 1 1325 1040 280 113 40 chr1 97108578 97108982 -100086450 + RLTR12A LTR ERVK 29 473 -95 1 1325 1159 202 23 199 chr1 97108982 97109501 -100085931 - RLTR23 LTR ERV1 -2 428 1 1 1325 1040 280 113 40 chr1 97109501 97109598 -100085834 + RLTR12A LTR ERVK 474 567 -1 1 1325 1188 245 10 10 chr1 97109602 97109895 -100085537 + Lx9 LINE L1 7032 7324 -320 1 1325 805 200 39 6 chr1 97110385 97110566 -100084866 - B2_Mm2 SINE B2 -1 194 8 1 1325 189 0 0 0 chr1 97110706 97110727 -100084705 + (CACAC)n Simple_repeat Simple_repeat 1 21 0 1 1325 279 173 0 0 chr1 97110863 97110915 -100084517 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1325 1611 156 62 13 chr1 97111312 97111618 -100083814 - ORR1A4 LTR MaLR -8 321 1 1 1325 756 193 80 6 chr1 97111774 97111936 -100083496 + MTC LTR MaLR 1 174 -247 1 1325 443 211 0 22 chr1 97111944 97112036 -100083396 + MTC LTR MaLR 332 421 0 1 1325 249 33 0 0 chr1 97112302 97112332 -100083100 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1325 28 48 0 0 chr1 97112874 97112916 -100082516 + AT_rich Low_complexity Low_complexity 1 42 0 1 1325 287 345 14 35 chr1 97113059 97113203 -100082229 + MER3 DNA MER1_type 69 209 0 1 1325 1989 62 12 0 chr1 97113285 97113543 -100081889 - L1_Mus1 LINE L1 -437 6130 5870 1 1325 3265 54 2 18 chr1 97113543 97113978 -100081454 + L1_Mus1 LINE L1 6139 6566 -1 1 1325 870 313 61 38 chr1 97114052 97114477 -100080955 + Lx7 LINE L1 6711 7145 -551 1 1325 281 188 0 45 chr1 97114765 97114832 -100080600 + (CATA)n Simple_repeat Simple_repeat 2 65 0 1 1325 261 209 0 0 chr1 97114834 97114901 -100080531 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1325 259 349 50 65 chr1 97115748 97115947 -100079485 + MLT1H-int LTR MaLR 1208 1403 -6 1 1325 567 0 0 0 chr1 97116118 97116181 -100079251 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1325 209 139 23 0 chr1 97116858 97116901 -100078531 + A-rich Low_complexity Low_complexity 5 48 0 1 1325 314 204 0 11 chr1 97117445 97117534 -100077898 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1325 255 246 0 14 chr1 97117678 97117752 -100077680 - Lx8 LINE L1 -3 7470 7398 1 1325 22 0 0 0 chr1 97118681 97118703 -100076729 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 242 364 0 0 chr1 97119243 97119309 -100076123 - tRNA-Ala-GCA tRNA tRNA -9 66 1 1 1325 186 269 61 61 chr1 97120771 97120870 -100074562 - L2a LINE L2 -1 3425 3327 1 1325 269 28 0 0 chr1 97121332 97121368 -100074064 - L1_Mus2 LINE L1 -6 6560 6525 1 1325 1149 252 13 46 chr1 97121471 97121778 -100073654 + ORR1D2-int LTR MaLR 890 1186 -184 1 1325 650 133 12 37 chr1 97121778 97121942 -100073490 + (TATATG)n Simple_repeat Simple_repeat 5 164 0 1 1325 310 187 53 32 chr1 97121961 97122055 -100073377 + ORR1D2-int LTR MaLR 1185 1280 -90 1 165 26727 28 0 0 chr1 97122055 97125242 -100070190 + L1Md_T LINE L1 2399 5586 -297 1 1326 8455 32 0 0 chr1 97125242 97126238 -100069194 + L1Md_T LINE L1 5587 6582 0 1 1326 447 231 28 9 chr1 97126310 97126419 -100069013 + ORR1D2 LTR MaLR 1 111 -248 1 1326 2255 63 0 3 chr1 97126419 97126705 -100068727 + L1Md_F2 LINE L1 5302 5586 -297 1 1326 7750 54 5 4 chr1 97126705 97127688 -100067744 + L1Md_F2 LINE L1 5587 6570 -12 1 1326 996 250 37 16 chr1 97127694 97127952 -100067480 + ORR1D2 LTR MaLR 104 374 0 1 1326 22 0 0 0 chr1 97128046 97128068 -100067364 + AT_rich Low_complexity Low_complexity 1 22 0 1 1326 756 321 98 24 chr1 97128108 97128565 -100066867 + Lx8 LINE L1 6035 6525 -948 1 1326 41169 8 0 1 chr1 97128961 97135954 -100059478 - L1Md_A LINE L1 0 6582 1 1 1326 21 71 0 0 chr1 97136496 97136538 -100058894 + AT_rich Low_complexity Low_complexity 1 42 0 1 1326 639 0 0 0 chr1 97137292 97137363 -100058069 + (TTC)n Simple_repeat Simple_repeat 3 73 0 1 1326 265 257 80 13 chr1 97139251 97139326 -100056106 - B4A SINE B4 -15 277 198 1 1326 1592 323 41 20 chr1 97139526 97140227 -100055205 - Lx8 LINE L1 -350 7123 6408 1 1326 519 340 46 15 chr1 97140229 97140426 -100055006 - B4A SINE B4 -64 228 26 1 1326 1096 68 0 20 chr1 97140507 97140656 -100054776 - B1_Mus2 SINE Alu 0 147 2 1 1326 471 241 70 76 chr1 97140517 97140674 -100054758 - B4A SINE B4 -72 220 65 1 1326 414 164 32 16 chr1 97142156 97142280 -100053152 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 1326 1520 349 45 55 chr1 97144670 97145502 -100049930 + Lx7 LINE L1 6476 7298 -398 2 1326 284 127 18 0 chr1 97145534 97145589 -100049843 + (GGGAGA)n Simple_repeat Simple_repeat 3 58 0 2 1326 213 277 92 46 chr1 97145945 97146032 -100049400 + B4 SINE B4 3 93 -199 2 1326 33 43 0 0 chr1 97146605 97146652 -100048780 + AT_rich Low_complexity Low_complexity 1 47 0 2 1326 432 326 97 22 chr1 97147019 97147204 -100048228 - MER76 LTR ERVL -201 490 292 2 1326 372 297 16 25 chr1 97147378 97147499 -100047933 + PB1D7 SINE Alu 1 120 0 2 1326 26 50 0 0 chr1 97147507 97147547 -100047885 + AT_rich Low_complexity Low_complexity 1 40 0 2 1326 1090 20 0 38 chr1 97147725 97147883 -100047549 + (GGGAGA)n Simple_repeat Simple_repeat 6 157 0 2 1326 638 210 128 46 chr1 97148263 97148458 -100046974 - ORR1C2 LTR MaLR 0 384 174 2 1326 566 93 12 0 chr1 97148458 97148544 -100046888 + (GA)n Simple_repeat Simple_repeat 1 87 0 2 1326 618 236 20 114 chr1 97148544 97148732 -100046700 - ORR1C2 LTR MaLR -192 182 14 2 1326 315 0 0 0 chr1 97148732 97148767 -100046665 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1326 618 236 20 114 chr1 97148767 97148779 -100046653 - ORR1C2 LTR MaLR -361 13 2 2 1326 1646 294 16 25 chr1 97148829 97149338 -100046094 - RMER5 LTR ERV1 0 534 31 2 1326 224 245 0 20 chr1 97149400 97149450 -100045982 - BC1_Mm scRNA scRNA -84 68 20 2 1326 823 341 81 27 chr1 97149957 97150000 -100045432 - MLT2B3 LTR ERVL -13 704 658 2 1326 237 33 0 0 chr1 97150000 97150030 -100045402 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1326 949 343 81 25 chr1 97150030 97150533 -100044899 - MLT2B3 LTR ERVL -60 657 119 2 1326 354 173 0 0 chr1 97150833 97150908 -100044524 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1326 1827 142 48 73 chr1 97150999 97151370 -100044062 + ORR1B1 LTR MaLR 33 394 0 2 1326 459 0 0 0 chr1 97152270 97152321 -100043111 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1326 31 58 0 0 chr1 97153627 97153679 -100041753 + AT_rich Low_complexity Low_complexity 1 52 0 2 1326 2339 75 9 3 chr1 97153832 97154152 -100041280 - L1_Mus3 LINE L1 -1 6637 6316 2 1326 198 71 0 0 chr1 97154172 97154200 -100041232 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1326 282 365 95 14 chr1 97154229 97154376 -100041056 - RSINE1 SINE B4 -4 161 3 2 1326 1957 340 63 26 chr1 97155325 97156393 -100039039 + Lx8 LINE L1 5725 6831 -642 2 1326 2538 98 32 3 chr1 97156437 97157038 -100038394 + L1_Mus4 LINE L1 6244 6636 0 2 1326 411 303 84 11 chr1 97157050 97157240 -100038192 + Lx8 LINE L1 6916 7119 -354 2 1326 433 272 0 0 chr1 97157846 97157949 -100037483 + Lx8 LINE L1 7146 7248 -225 2 1326 849 100 0 0 chr1 97157958 97158078 -100037354 + Lx2 LINE L1 6362 6481 -516 2 1326 439 250 15 30 chr1 97158121 97158253 -100037179 - Lx6 LINE L1 -152 7308 7179 2 1326 750 257 57 16 chr1 97158256 97158501 -100036931 - MTD-int LTR MaLR -1003 255 1 2 1326 888 249 57 0 chr1 97158502 97158711 -100036721 - MTD LTR MaLR -1 418 198 2 1326 3084 182 80 16 chr1 97159450 97160154 -100035278 - RMER6A LTR ERVK -7 749 1 2 1326 695 62 0 40 chr1 97160936 97161084 -100034348 + (TCTCC)n Simple_repeat Simple_repeat 1 142 0 2 1326 1122 125 0 0 chr1 97161084 97161260 -100034172 + (TTTCC)n Simple_repeat Simple_repeat 3 178 0 2 1326 695 98 0 47 chr1 97161260 97161328 -100034104 + (TCTCC)n Simple_repeat Simple_repeat 1 68 0 2 1326 3763 144 9 21 chr1 97161344 97161976 -100033456 - Lx3B LINE L1 -4 6969 6345 2 1326 22 56 0 0 chr1 97162038 97162074 -100033358 + AT_rich Low_complexity Low_complexity 1 36 0 2 1326 1366 88 16 0 chr1 97162308 97162490 -100032942 + B2_Mm2 SINE B2 2 186 -9 2 1326 27 62 0 0 chr1 97162493 97162541 -100032891 + AT_rich Low_complexity Low_complexity 1 48 0 2 1326 1088 251 149 3 chr1 97162766 97163101 -100032331 + MTD LTR MaLR 3 386 -33 2 1326 256 253 13 13 chr1 97163574 97163650 -100031782 - MLT1E1A LTR MaLR 0 680 605 2 1326 354 360 86 7 chr1 97164161 97164301 -100031131 + RSINE1 SINE B4 13 163 -2 2 1326 3149 156 13 2 chr1 97165631 97166177 -100029255 - Lx LINE L1 -5 6649 6098 2 1326 331 256 11 11 chr1 97167153 97167244 -100028188 - Lx7 LINE L1 -700 6996 6906 2 1326 2649 46 61 0 chr1 97167319 97167645 -100027787 - ORR1A1 LTR MaLR 0 346 1 2 1326 13892 56 4 7 chr1 97167645 97169442 -100025990 - ORR1A1-int LTR MaLR 0 1792 1 2 1326 2543 58 61 0 chr1 97169442 97169768 -100025664 - ORR1A1 LTR MaLR 0 346 1 2 1326 476 256 311 14 chr1 97169980 97170257 -100025175 + RLTR9A LTR ERVK 1 359 -9 2 1326 299 295 12 16 chr1 97171320 97171400 -100024032 + ID4_ SINE ID 11 88 -64 2 1326 5502 229 82 37 chr1 97171845 97172992 -100022440 + Lx7 LINE L1 6190 7418 -278 2 1326 396 0 0 0 chr1 97172992 97173036 -100022396 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1326 5502 229 82 37 chr1 97173036 97173330 -100022102 + Lx7 LINE L1 7419 7695 -1 2 1326 261 0 0 0 chr1 97173517 97173546 -100021886 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1326 400 168 0 19 chr1 97174272 97174375 -100021057 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1326 367 318 38 8 chr1 97174592 97174725 -100020707 + B1F SINE Alu 4 140 -9 2 1326 842 306 35 59 chr1 97175688 97175976 -100019456 + B4A SINE B4 11 291 -1 2 1326 21 0 0 0 chr1 97176301 97176322 -100019110 + AT_rich Low_complexity Low_complexity 1 21 0 2 1326 432 0 0 0 chr1 97177132 97177180 -100018252 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1326 387 289 35 50 chr1 97177188 97177405 -100018027 - MT2B LTR ERVL -81 520 183 2 1326 2039 189 28 32 chr1 97177347 97177784 -100017648 + ORR1C2-int LTR MaLR 1075 1509 0 2 1326 638 231 122 24 chr1 97177784 97177945 -100017487 + ORR1C2 LTR MaLR 206 382 -2 2 1326 1349 311 109 56 chr1 97177985 97178896 -100016536 + Charlie1a DNA MER1_type 274 1232 -223 2 1326 265 292 46 19 chr1 97179221 97179329 -100016103 - Lx7 LINE L1 -348 7348 7238 2 1326 900 268 49 51 chr1 97179368 97179585 -100015847 + Lx7 LINE L1 7328 7541 -155 2 1326 213 39 0 0 chr1 97179585 97179611 -100015821 + (TTATA)n Simple_repeat Simple_repeat 4 29 0 2 1326 900 268 49 51 chr1 97179611 97179763 -100015669 + Lx7 LINE L1 7542 7696 0 2 1326 199 0 65 0 chr1 97179771 97179802 -100015630 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1326 421 348 6 30 chr1 97180270 97180436 -100014996 + RSINE1 SINE B4 4 165 0 2 1326 22 35 0 0 chr1 97180953 97180982 -100014450 + AT_rich Low_complexity Low_complexity 1 29 0 2 1326 216 0 0 0 chr1 97181098 97181122 -100014310 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1326 877 233 70 140 chr1 97182195 97182524 -100012908 + ORR1C2 LTR MaLR 1 306 -78 2 1326 946 126 113 6 chr1 97182522 97182690 -100012742 + MTC LTR MaLR 230 415 -6 2 1326 24 21 0 60 chr1 97183462 97183512 -100011920 + AT_rich Low_complexity Low_complexity 1 47 0 2 1326 791 280 37 113 chr1 97183917 97184299 -100011133 + MTE2a LTR MaLR 13 365 -14 2 1326 334 257 172 140 chr1 97184810 97185095 -100010337 - MTE2a LTR MaLR -17 362 69 2 1326 520 105 128 0 chr1 97185252 97185338 -100010094 + B2_Mm2 SINE B2 11 107 -88 2 1326 3249 145 55 4 chr1 97185516 97185791 -100009641 + Lx4A LINE L1 6461 6756 -302 2 1326 429 20 0 0 chr1 97185791 97185841 -100009591 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1326 3249 145 55 4 chr1 97185841 97186125 -100009307 + Lx4A LINE L1 6757 7049 -9 2 1326 805 249 27 65 chr1 97187272 97187548 -100007884 + RMER10B LTR ERVL 23 300 -142 2 1326 807 209 43 58 chr1 97187558 97187766 -100007666 + RMER10B LTR ERVL 194 398 0 2 1326 990 203 13 35 chr1 97187977 97188291 -100007141 - Lx2B LINE L1 -18 6982 6442 2 1326 455 188 69 15 chr1 97188288 97188418 -100007014 + Lx3C LINE L1 6838 6974 -2 2 1326 25 0 0 0 chr1 97188418 97188443 -100006989 + AT_rich Low_complexity Low_complexity 1 25 0 2 1326 364 286 0 8 chr1 97188443 97188563 -100006869 + Lx7 LINE L1 7578 7696 0 2 1326 357 186 0 0 chr1 97190063 97190133 -100005299 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1326 25 31 0 0 chr1 97190710 97190742 -100004690 + AT_rich Low_complexity Low_complexity 1 32 0 2 1326 884 353 79 5 chr1 97191346 97191776 -100003656 - Lx8 LINE L1 -182 7291 6830 2 1326 21 0 0 0 chr1 97192297 97192318 -100003114 + AT_rich Low_complexity Low_complexity 1 21 0 2 1326 641 158 8 0 chr1 97193011 97193131 -100002301 + CT-rich Low_complexity Low_complexity 1 121 0 2 1326 208 171 24 0 chr1 97193400 97193441 -100001991 + A-rich Low_complexity Low_complexity 3 44 0 2 1326 258 250 0 0 chr1 97193539 97193591 -100001841 - ID_B1 SINE B4 -72 152 101 2 1326 231 260 0 41 chr1 97193591 97193604 -100001828 - PB1D10 SINE Alu -37 55 10 2 1326 231 218 18 0 chr1 97194795 97194850 -100000582 - L1MA9 LINE L1 -2 6310 6255 2 1326 226 192 19 19 chr1 97194870 97194923 -100000509 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 2 1326 621 305 123 16 chr1 97194943 97195316 -100000116 - L1M2 LINE L1 -1784 4359 3947 2 1326 714 254 113 5 chr1 97196229 97196423 -99999009 - Lx6 LINE L1 -15 7445 7231 2 1326 42 20 0 0 chr1 97197915 97197964 -99997468 + AT_rich Low_complexity Low_complexity 1 49 0 2 1326 2962 59 5 3 chr1 97198566 97198956 -99996476 - L1_Mus2 LINE L1 0 6566 6176 2 1326 1128 287 39 60 chr1 97199190 97200102 -99995330 - Lx9 LINE L1 -1104 6540 5532 2 1326 242 29 29 0 chr1 97200102 97200137 -99995295 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 2 1326 1052 272 28 57 chr1 97200137 97200237 -99995195 - Lx9 LINE L1 -316 5531 5432 2 1326 310 292 114 21 chr1 97200246 97200386 -99995046 + Lx9 LINE L1 6646 6798 -846 2 1326 28 71 0 0 chr1 97200408 97200464 -99994968 + AT_rich Low_complexity Low_complexity 1 56 0 2 1326 266 0 29 0 chr1 97202187 97202221 -99993211 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1326 489 17 0 0 chr1 97202521 97202579 -99992853 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1326 413 321 28 0 chr1 97203095 97203201 -99992231 + B1F SINE Alu 1 109 -40 2 1326 309 109 0 0 chr1 97203229 97203284 -99992148 + (CAAT)n Simple_repeat Simple_repeat 2 56 0 2 1326 474 177 31 0 chr1 97203368 97203464 -99991968 + Lx2 LINE L1 6530 6628 -369 2 1326 1229 137 43 17 chr1 97203464 97203695 -99991737 + Lx LINE L1 6414 6650 -4 2 1326 413 239 68 27 chr1 97203695 97203744 -99991688 + Lx2 LINE L1 6628 6679 -321 2 1326 352 206 30 8 chr1 97204048 97204180 -99991252 + (TA)n Simple_repeat Simple_repeat 1 135 0 2 1326 22 56 0 0 chr1 97204285 97204321 -99991111 + AT_rich Low_complexity Low_complexity 1 36 0 3 1326 4189 99 130 70 chr1 97205152 97205991 -99989441 + RMER17D LTR ERVK 1 889 0 3 1326 288 0 0 0 chr1 97206087 97206119 -99989313 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1326 2622 209 131 29 chr1 97206309 97206970 -99988462 - RMER1B Other Other -2 1064 20 3 1326 422 212 49 127 chr1 97206955 97207160 -99988272 - RMER1B Other Other -583 483 295 3 1326 288 0 0 0 chr1 97207211 97207243 -99988189 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1326 28 29 0 0 chr1 97207248 97207283 -99988149 + AT_rich Low_complexity Low_complexity 1 35 0 3 1326 180 268 0 0 chr1 97208063 97208104 -99987328 + MIR SINE MIR 116 156 -106 3 1326 960 196 20 16 chr1 97208113 97208354 -99987078 - ORR1B1 LTR MaLR -191 168 2 3 1326 478 0 32 0 chr1 97208463 97208525 -99986907 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1326 400 272 129 46 chr1 97209591 97209887 -99985545 - MER67D LTR ERV1 -338 373 22 3 1326 624 271 90 84 chr1 97211766 97212088 -99983344 + Charlie1a DNA MER1_type 905 1228 -227 3 1326 274 338 97 0 chr1 97212231 97212376 -99983056 - MER113 DNA MER1_type -246 275 117 3 1326 190 316 197 29 chr1 97214205 97214342 -99981090 - MIRb SINE MIR -78 190 31 3 1326 619 46 23 0 chr1 97214708 97214795 -99980637 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3 1326 418 290 56 8 chr1 97214798 97214923 -99980509 - B1_Mur1 SINE Alu -18 131 1 3 1326 625 256 9 33 chr1 97216082 97216233 -99979199 - ID_B1 SINE B4 0 224 82 3 1326 472 303 113 76 chr1 97216318 97216868 -99978564 - RLTR18 LTR ERVK -15 601 27 3 1326 451 240 15 39 chr1 97217311 97217441 -99977991 - ID_B1 SINE B4 -5 219 93 3 1326 200 200 0 24 chr1 97218978 97219019 -99976413 + G-rich Low_complexity Low_complexity 6 45 0 3 1326 204 328 47 0 chr1 97220934 97220998 -99974434 + MER5B DNA MER1_type 111 177 -1 3 1326 563 250 33 43 chr1 97221169 97221353 -99974079 + B3A SINE B2 1 182 -16 3 1326 710 316 194 52 chr1 97222132 97222695 -99972737 - Lx8 LINE L1 -194 7279 6637 3 1326 329 348 17 0 chr1 97222830 97222948 -99972484 + Lx8 LINE L1 6203 6322 -1151 3 1326 556 241 147 6 chr1 97222944 97223107 -99972325 - Lx8 LINE L1 -958 6515 6330 3 1326 308 301 58 10 chr1 97223506 97223610 -99971822 + ORR1E LTR MaLR 2 110 -249 3 1326 530 274 65 53 chr1 97223623 97223874 -99971558 + ORR1E LTR MaLR 54 311 -48 3 1326 467 157 83 0 chr1 97223890 97223998 -99971434 - Lx9 LINE L1 -490 7154 7038 3 1326 239 274 65 52 chr1 97224722 97224799 -99970633 - ID4_ SINE ID -4 79 2 3 1326 315 49 0 0 chr1 97224921 97224962 -99970470 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 1326 1574 272 49 0 chr1 97224993 97225460 -99969972 + Lx9 LINE L1 7128 7617 -27 3 1326 25 0 0 0 chr1 97225462 97225487 -99969945 + AT_rich Low_complexity Low_complexity 1 25 0 3 1326 296 48 24 0 chr1 97226512 97226554 -99968878 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1326 235 208 51 13 chr1 97226621 97226699 -99968733 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1326 280 344 62 0 chr1 97226710 97226806 -99968626 - PB1D10 SINE Alu -15 102 1 3 1326 548 124 0 0 chr1 97227081 97227178 -99968254 - L1_Mus3 LINE L1 0 6638 6542 3 1326 219 69 0 0 chr1 97227795 97227824 -99967608 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1326 300 267 188 0 chr1 97228630 97228731 -99966701 + PB1D7 SINE Alu 1 120 0 3 1326 23 54 0 0 chr1 97230305 97230342 -99965090 + AT_rich Low_complexity Low_complexity 1 37 0 3 1326 233 412 66 26 chr1 97232057 97232209 -99963223 - MLT1G1 LTR MaLR -314 265 108 3 1326 995 152 87 47 chr1 97232224 97232469 -99962963 + RMER19C LTR ERVK 1 313 -298 3 1326 11923 151 217 31 chr1 97232469 97232889 -99962543 + MurERV4_19-int LTR ERVK 828 1328 -4451 3 1326 237 65 0 0 chr1 97232889 97232920 -99962512 + B1_Mm SINE Alu 106 136 -11 3 1326 396 0 0 0 chr1 97232921 97232965 -99962467 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1326 11923 137 35 50 chr1 97232965 97234886 -99960546 + MurERV4_19-int LTR ERVK 1330 3256 -2524 3 1326 1567 169 23 20 chr1 97234886 97235187 -99960245 + RMER19C LTR ERVK 310 611 0 3 1326 269 378 71 49 chr1 97235269 97235536 -99959896 - MLT1G1-int LTR MaLR -8 1481 1209 3 1326 25 0 0 0 chr1 97235546 97235571 -99959861 + AT_rich Low_complexity Low_complexity 1 25 0 3 1326 2107 221 52 41 chr1 97236250 97236816 -99958616 - RMER19B LTR ERVK -373 529 21 3 1326 4568 71 3 10 chr1 97236824 97237434 -99957998 + L1_Mus2 LINE L1 5961 6566 0 3 1326 393 224 16 8 chr1 97237815 97237941 -99957491 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 1326 624 104 152 0 chr1 97238115 97238240 -99957192 - Lx3C LINE L1 -2 6974 6831 3 1326 379 333 24 0 chr1 97238240 97238408 -99957024 - RMER12 LTR ERVK -381 941 770 3 1326 409 218 16 0 chr1 97241278 97241402 -99954030 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 3 1326 883 83 19 13 chr1 97241423 97241581 -99953851 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 3 1326 1045 222 21 0 chr1 97241581 97241770 -99953662 - B3 SINE B2 -13 203 11 3 1326 2070 108 3 9 chr1 97242317 97242636 -99952796 + L1Md_F2 LINE L1 6254 6570 -12 3 1326 364 167 0 0 chr1 97242644 97242704 -99952728 - Lx2B LINE L1 -677 6323 6264 3 1326 423 0 0 0 chr1 97242706 97242753 -99952679 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1326 22657 85 206 15 chr1 97242918 97247255 -99948177 + L1Md_F LINE L1 600 5766 -117 3 1326 1104 52 0 0 chr1 97247252 97247388 -99948044 + L1Md_F2 LINE L1 6099 6234 -348 3 1326 672 85 25 17 chr1 97247388 97247507 -99947925 + L1Md_F2 LINE L1 6462 6581 -1 3 1326 913 267 57 53 chr1 97247991 97248324 -99947108 - Lx5 LINE L1 -404 7056 6455 3 1326 1277 207 6 201 chr1 97248330 97248632 -99946800 + Lx5 LINE L1 5497 5714 -166 3 1326 370 123 0 99 chr1 97248632 97248646 -99946786 - Lx2 LINE L1 -7 6990 6979 3 1326 597 40 0 0 chr1 97248646 97248722 -99946710 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1326 370 123 0 99 chr1 97248722 97248788 -99946644 - Lx2 LINE L1 -19 6978 6918 3 1326 2839 227 49 53 chr1 97248788 97249489 -99945943 + Lx5 LINE L1 5711 6451 -599 3 1326 507 73 0 0 chr1 97249685 97249753 -99945679 + (TAAG)n Simple_repeat Simple_repeat 3 70 0 3 1326 1875 311 72 30 chr1 97249817 97251390 -99944042 + Lx9 LINE L1 5308 7117 -527 3 1326 24 67 0 0 chr1 97251792 97251837 -99943595 + AT_rich Low_complexity Low_complexity 1 45 0 3 1326 382 211 44 0 chr1 97251935 97252049 -99943383 - Lx9 LINE L1 -3 7641 7523 3 1326 474 283 194 24 chr1 97252650 97253067 -99942365 + L1MB1 LINE L1 5679 6166 -2 3 1326 342 0 0 0 chr1 97254125 97254163 -99941269 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1326 666 220 8 0 chr1 97254678 97254810 -99940622 - Lx9 LINE L1 -445 7199 7067 3 165 525 229 0 0 chr1 97255342 97255499 -99939933 + (TG)n Simple_repeat Simple_repeat 1 157 0 3 1327 1730 138 7 19 chr1 97255913 97256203 -99939229 - Lx2B LINE L1 -449 6551 6051 3 1327 1026 163 40 50 chr1 97256203 97256481 -99938951 + MusHAL1 LINE L1 649 923 -1789 3 1327 9218 169 22 13 chr1 97256489 97258822 -99936610 - L1VL4 LINE L1 -947 2612 261 3 1327 43 0 0 0 chr1 97258879 97258922 -99936510 + AT_rich Low_complexity Low_complexity 1 43 0 3 1327 1122 71 0 0 chr1 97258924 97259065 -99936367 - B1_Mm SINE Alu -6 141 1 3 1327 201 140 51 34 chr1 97259142 97259201 -99936231 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 3 1327 228 330 19 28 chr1 97260209 97260315 -99935117 - L2 LINE L2 -768 2651 2547 3 1327 329 264 100 36 chr1 97261236 97261346 -99934086 + ID_B1 SINE B4 107 223 -1 3 1327 513 47 0 0 chr1 97261524 97261588 -99933844 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1327 317 312 166 42 chr1 97262661 97262969 -99932463 - L1MC4 LINE L1 -973 7069 6724 3 1327 29 60 0 0 chr1 97263609 97263659 -99931773 + AT_rich Low_complexity Low_complexity 1 50 0 3 1327 637 260 7 0 chr1 97263673 97263819 -99931613 - B1_Mur4 SINE Alu 0 150 4 3 1327 37 0 0 0 chr1 97263876 97263913 -99931519 + AT_rich Low_complexity Low_complexity 1 37 0 3 1327 1774 56 17 0 chr1 97263972 97264205 -99931227 + L1Md_F2 LINE L1 6346 6582 0 3 1327 330 91 0 0 chr1 97264224 97264279 -99931153 + (T)n Simple_repeat Simple_repeat 1 55 0 3 1327 666 308 39 29 chr1 97264806 97264905 -99930527 + Lx8 LINE L1 6762 6858 -615 3 1327 978 93 0 0 chr1 97264905 97265066 -99930366 + (TTCC)n Simple_repeat Simple_repeat 2 162 0 3 1327 690 13 0 0 chr1 97265074 97265153 -99930279 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1327 333 0 0 0 chr1 97265153 97265189 -99930243 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1327 666 308 39 29 chr1 97265189 97265390 -99930042 + Lx8 LINE L1 6874 7072 -401 3 1327 575 27 14 0 chr1 97265589 97265662 -99929770 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 3 1327 274 221 51 31 chr1 97265713 97265811 -99929621 + Lx9 LINE L1 7543 7642 -2 3 1327 1589 216 55 38 chr1 97265840 97266156 -99929276 - MTD LTR MaLR -31 388 67 3 1327 2051 83 7 19 chr1 97266156 97266463 -99928969 - L1Md_F2 LINE L1 -1 6581 6279 3 1327 1589 216 55 38 chr1 97266463 97266492 -99928940 - MTD LTR MaLR -353 66 37 3 1327 9116 141 16 11 chr1 97268125 97270582 -99924850 - Lx LINE L1 -3 6651 4183 3 1327 225 272 181 19 chr1 97270644 97270749 -99924683 + MLT1D LTR MaLR 384 505 0 3 1327 38 22 0 0 chr1 97271667 97271712 -99923720 + AT_rich Low_complexity Low_complexity 1 45 0 3 1327 288 130 0 0 chr1 97273388 97273434 -99921998 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1327 446 297 102 22 chr1 97273530 97273696 -99921736 + L1MB1 LINE L1 5205 5398 -791 3 1327 432 0 0 0 chr1 97273696 97273744 -99921688 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1327 446 312 109 78 chr1 97273744 97273828 -99921604 + L1MB1 LINE L1 5399 5489 -700 3 1327 762 206 20 7 chr1 97273828 97273975 -99921457 + B1_Mur4 SINE Alu 2 150 0 3 1327 446 312 109 78 chr1 97273975 97274334 -99921098 + L1MB1 LINE L1 5490 5853 -336 3 1327 1264 179 32 0 chr1 97274334 97274552 -99920880 - URR1B DNA MER1_type 0 225 1 3 1327 446 312 109 78 chr1 97274552 97274600 -99920832 + L1MB1 LINE L1 5854 5901 -288 3 1327 622 290 0 0 chr1 97274648 97274786 -99920646 + RSINE1 SINE B4 14 151 -14 3 1327 430 284 86 75 chr1 97274821 97275105 -99920327 + L1MA9 LINE L1 5940 6227 -85 3 1327 442 300 77 6 chr1 97275105 97275204 -99920228 - RMER30 DNA MER1_type -4 198 93 4 1327 489 71 0 0 chr1 97275204 97275274 -99920158 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1327 442 300 77 6 chr1 97275274 97275355 -99920077 - RMER30 DNA MER1_type -110 92 5 4 1327 430 284 86 75 chr1 97275355 97275431 -99920001 + L1MA9 LINE L1 6228 6304 -8 3 1327 1000 83 8 0 chr1 97275870 97276002 -99919430 + B1_Mm SINE Alu 1 133 -14 4 1327 285 89 0 0 chr1 97276002 97276047 -99919385 + (CAAT)n Simple_repeat Simple_repeat 4 48 0 4 1327 775 240 40 6 chr1 97276916 97277092 -99918340 + URR1B DNA MER1_type 1 182 -43 4 1327 423 232 82 63 chr1 97277073 97277316 -99918116 - MTEa LTR MaLR -41 338 98 4 1327 584 239 68 0 chr1 97277348 97277465 -99917967 + RLTR18B LTR ERVK 71 195 -317 4 1327 7097 239 64 10 chr1 97278106 97279910 -99915522 - Lx6 LINE L1 -16 7444 5525 4 1327 1381 232 47 11 chr1 97279896 97280258 -99915174 - Lx6 LINE L1 -3994 1886 1512 4 1327 7273 108 5 7 chr1 97280251 97281560 -99913872 - L1_Mus3 LINE L1 -1 6637 5331 4 1327 11008 149 51 13 chr1 97281556 97281814 -99913618 + L1_Mm LINE L1 3220 3484 -2399 4 1327 306 0 0 0 chr1 97281814 97281848 -99913584 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1327 11008 149 51 13 chr1 97281848 97283608 -99911824 + L1_Mm LINE L1 3485 5314 -569 4 1327 370 259 19 0 chr1 97283605 97283713 -99911719 - Lx6 LINE L1 -4353 1524 1415 4 1327 795 218 65 4 chr1 97283713 97283976 -99911456 - Lx6 LINE L1 -4312 1568 1290 4 1327 524 331 41 7 chr1 97285831 97285977 -99909455 - RSINE1 SINE B4 -4 161 11 4 1327 279 79 0 0 chr1 97286040 97286078 -99909354 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1327 288 70 0 0 chr1 97286212 97286255 -99909177 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 4 1327 201 177 178 31 chr1 97286814 97286895 -99908537 - MIR SINE MIR -85 183 77 4 1327 21 0 0 0 chr1 97287259 97287280 -99908152 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 2043 298 107 20 chr1 97287429 97288176 -99907256 - MTEa-int LTR MaLR -768 812 1 4 1327 445 278 44 22 chr1 97288176 97288312 -99907120 - MTEa LTR MaLR 0 379 241 4 1327 453 325 19 38 chr1 97288350 97288510 -99906922 - MTEa LTR MaLR -222 157 1 4 1327 248 273 44 29 chr1 97289406 97289474 -99905958 + RSINE1 SINE B4 37 105 -60 4 1327 660 67 33 16 chr1 97289493 97289615 -99905817 + (CA)n Simple_repeat Simple_repeat 2 125 0 4 1327 1453 192 110 16 chr1 97290221 97290538 -99904894 + RMER10B LTR ERVL 52 398 0 4 1327 186 43 0 0 chr1 97291821 97291844 -99903588 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 4 1327 837 162 201 0 chr1 97292232 97292411 -99903021 - B3 SINE B2 0 216 2 4 1327 22 0 0 0 chr1 97292422 97292444 -99902988 + AT_rich Low_complexity Low_complexity 1 22 0 4 1327 269 335 92 12 chr1 97292910 97293073 -99902359 - ID_B1 SINE B4 -4 220 45 4 1327 1367 274 62 28 chr1 97293264 97293657 -99901775 + Lx6 LINE L1 6990 7313 -147 4 1327 191 36 36 0 chr1 97293657 97293685 -99901747 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1327 1367 266 54 24 chr1 97293685 97293787 -99901645 + Lx6 LINE L1 7314 7414 -46 4 1327 24 32 0 0 chr1 97293791 97293822 -99901610 + AT_rich Low_complexity Low_complexity 1 31 0 4 1327 1374 254 14 42 chr1 97293877 97294238 -99901194 + ORR1D2 LTR MaLR 20 370 0 4 1327 270 0 0 0 chr1 97294711 97294741 -99900691 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1327 2210 194 96 106 chr1 97295156 97295853 -99899579 - RMER6C LTR ERVK 0 690 1 4 1327 606 81 21 5 chr1 97296016 97296112 -99899320 - B1_Mus2 SINE Alu 0 147 21 4 1327 22 0 0 0 chr1 97296145 97296167 -99899265 + AT_rich Low_complexity Low_complexity 1 22 0 4 1327 414 374 6 6 chr1 97296342 97296506 -99898926 + B3A SINE B2 9 172 -26 4 1327 3344 176 32 26 chr1 97296534 97297222 -99898210 - RLTR17 LTR ERVK 0 692 1 4 1327 219 36 0 0 chr1 97297684 97297712 -99897720 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 1327 393 22 0 0 chr1 97298183 97298229 -99897203 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1327 7419 183 48 19 chr1 97298762 97298895 -99896537 - L1_Mur3 LINE L1 -2735 3145 3010 4 1327 581 61 12 0 chr1 97298895 97298977 -99896455 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1327 7419 183 48 19 chr1 97298977 97299877 -99895555 - L1_Mur3 LINE L1 -2871 3009 2067 4 1327 420 20 0 0 chr1 97299877 97299926 -99895506 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1327 7419 183 48 19 chr1 97299926 97300721 -99894711 - L1_Mur3 LINE L1 -3814 2066 1267 4 1327 2086 184 106 25 chr1 97300732 97301122 -99894310 - L1_Mur3 LINE L1 -6530 1198 766 4 1327 2755 102 47 0 chr1 97301122 97301525 -99893907 - BGLII_Mus LTR ERVK 0 422 1 4 1327 2086 184 106 25 chr1 97301525 97301651 -99893781 - L1_Mur3 LINE L1 -6963 765 640 4 1327 2422 317 76 35 chr1 97302523 97303681 -99891751 - Lx8 LINE L1 -70 7403 6198 4 1327 2877 228 63 36 chr1 97303718 97304531 -99890901 - Lx9 LINE L1 -9 7635 6801 4 1327 1054 318 61 93 chr1 97304531 97305381 -99890051 - RMER1C Other Other -508 834 12 4 1327 2347 219 28 47 chr1 97305912 97306124 -99889308 - L1_Rod LINE L1 -3900 1947 1740 4 1327 411 21 0 0 chr1 97306124 97306172 -99889260 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1327 2347 219 28 47 chr1 97306172 97306686 -99888746 - L1_Rod LINE L1 -4108 1739 1235 4 1327 785 284 53 62 chr1 97306781 97307268 -99888164 - Lx7 LINE L1 -1581 6115 5633 4 1327 1909 145 53 0 chr1 97307270 97307573 -99887859 + ORR1A2 LTR MaLR 1 319 -8 4 1327 253 230 68 0 chr1 97307589 97307663 -99887769 - L1_Mur3 LINE L1 -636 5655 5577 4 1327 387 286 30 12 chr1 97307694 97307863 -99887569 - Lx7 LINE L1 -532 6941 6759 4 1327 897 294 76 7 chr1 97307879 97308300 -99887132 - L1_Mur3 LINE L1 -819 5481 4998 4 1327 1356 264 17 36 chr1 97308875 97309236 -99886196 - ORR1D2 LTR MaLR 0 370 17 4 1327 4277 31 0 10 chr1 97309244 97309758 -99885674 - L1Md_F2 LINE L1 0 6582 6074 4 1327 25 0 0 0 chr1 97310452 97310477 -99884955 + AT_rich Low_complexity Low_complexity 1 25 0 4 1327 24 0 0 0 chr1 97310936 97310960 -99884472 + AT_rich Low_complexity Low_complexity 1 24 0 4 1327 182 37 37 0 chr1 97312588 97312615 -99882817 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1327 29583 77 6 5 chr1 97312664 97317269 -99878163 - L1Md_F2 LINE L1 -1 6581 1969 4 1327 207 0 0 0 chr1 97317269 97317292 -99878140 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1327 29583 80 4 4 chr1 97317292 97317442 -99877990 - L1Md_F2 LINE L1 -3915 1968 1819 4 1327 689 326 113 41 chr1 97317595 97317957 -99877475 - MER21B LTR ERV1 -148 715 328 4 1327 24 32 0 0 chr1 97318694 97318725 -99876707 + AT_rich Low_complexity Low_complexity 1 31 0 4 1327 532 299 91 47 chr1 97319694 97319936 -99875496 - L1M2 LINE L1 -581 5719 5469 4 1327 1675 137 30 37 chr1 97319936 97320231 -99875201 - Lx3A LINE L1 -7 6974 6682 4 1327 532 299 91 47 chr1 97320231 97320416 -99875016 - L1M2 LINE L1 -832 5468 5273 4 1327 497 310 116 5 chr1 97320565 97320944 -99874488 - L1M2 LINE L1 -882 5261 4841 4 1327 331 324 75 25 chr1 97321574 97321935 -99873497 - L1_Mur1 LINE L1 -3915 1971 1593 4 1327 294 87 0 0 chr1 97321979 97322025 -99873407 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1327 516 93 0 0 chr1 97322326 97322401 -99873031 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 4 1327 297 152 0 0 chr1 97322586 97322632 -99872800 - RMER10B LTR ERVL 0 398 353 4 1327 1173 252 20 22 chr1 97322651 97322987 -99872445 - RMER10B LTR ERVL -78 364 3 4 1327 21 36 0 0 chr1 97323443 97323471 -99871961 + AT_rich Low_complexity Low_complexity 1 28 0 4 1327 26 0 0 0 chr1 97323969 97323995 -99871437 + AT_rich Low_complexity Low_complexity 1 26 0 4 1327 28 29 0 0 chr1 97324044 97324079 -99871353 + AT_rich Low_complexity Low_complexity 1 35 0 4 1327 219 69 0 0 chr1 97324511 97324540 -99870892 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1327 2500 239 72 2 chr1 97324643 97325210 -99870222 + Lx6 LINE L1 6843 7449 -11 4 1327 325 186 17 0 chr1 97326801 97326860 -99868572 - HAL1-3A_ME LINE L1 -825 2033 1974 4 1327 4164 85 3 0 chr1 97327206 97327772 -99867660 - L1_Mm LINE L1 -349 5534 4967 4 1327 2719 71 5 5 chr1 97327772 97328139 -99867293 + L1_Mus1 LINE L1 6200 6566 -1 4 1327 407 91 0 0 chr1 97328252 97328307 -99867125 - L1_Mm LINE L1 -4091 1792 1738 4 1327 610 64 9 35 chr1 97328307 97328420 -99867012 + L1Md_F2 LINE L1 6473 6582 0 4 1327 24 0 0 0 chr1 97329131 97329155 -99866277 + AT_rich Low_complexity Low_complexity 1 24 0 4 1327 1188 34 0 7 chr1 97329513 97329661 -99865771 - L1_Mus1 LINE L1 -2 6565 6419 4 1327 221 53 53 0 chr1 97330175 97330213 -99865219 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 1327 208 258 0 20 chr1 97330971 97331070 -99864362 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1327 205 23 65 43 chr1 97331173 97331219 -99864213 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1327 1784 30 98 13 chr1 97331563 97331797 -99863635 + L1Md_F3 LINE L1 6331 6584 0 4 1327 1132 109 50 50 chr1 97333062 97333284 -99862148 - L1_Mus3 LINE L1 0 6638 6417 4 1327 183 204 0 0 chr1 97333690 97333734 -99861698 + T-rich Low_complexity Low_complexity 1 44 0 4 1327 21 0 0 0 chr1 97334524 97334545 -99860887 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 729 146 0 0 chr1 97334674 97334797 -99860635 + (GGGA)n Simple_repeat Simple_repeat 3 125 0 4 1327 3109 32 42 3 chr1 97335063 97335442 -99859990 + MTA_Mm LTR MaLR 1 394 -2 4 1327 25 0 0 0 chr1 97335615 97335640 -99859792 + AT_rich Low_complexity Low_complexity 1 25 0 4 1327 558 298 36 43 chr1 97335642 97335944 -99859488 - L1MA6 LINE L1 -117 6183 5884 4 1327 843 249 73 52 chr1 97335987 97336355 -99859077 - L1MA6 LINE L1 -517 5795 5420 4 1327 288 0 0 0 chr1 97336380 97336412 -99859020 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1327 1035 67 8 0 chr1 97336412 97336546 -99858886 - B1_Mus1 SINE Alu -13 135 1 4 1327 6601 94 22 7 chr1 97337689 97338630 -99856802 + Lx LINE L1 5698 6652 -2 4 1327 327 159 0 14 chr1 97339309 97339379 -99856053 + Lx3C LINE L1 6896 6964 -12 4 1327 515 66 13 0 chr1 97339459 97339535 -99855897 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1327 253 316 8 71 chr1 97339846 97339972 -99855460 - Lx9 LINE L1 -1655 5989 5872 4 1327 22 80 0 0 chr1 97339993 97340043 -99855389 + AT_rich Low_complexity Low_complexity 1 50 0 4 1327 246 254 0 0 chr1 97340340 97340395 -99855037 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 4 1327 320 214 58 13 chr1 97340504 97340660 -99854772 + (TA)n Simple_repeat Simple_repeat 1 163 0 4 1327 641 267 44 79 chr1 97340663 97340915 -99854517 - MT2B LTR ERVL -33 568 326 4 1327 297 0 0 0 chr1 97341017 97341050 -99854382 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1327 195 139 0 0 chr1 97341077 97341113 -99854319 + (CATA)n Simple_repeat Simple_repeat 3 38 0 4 1327 5060 95 10 3 chr1 97343185 97343906 -99851526 - L1_Mus4 LINE L1 -7 6629 5904 4 1327 918 231 27 68 chr1 97344592 97344661 -99850771 - Lx7 LINE L1 -586 7110 7042 4 1327 1185 104 114 5 chr1 97344661 97344863 -99850569 + URR1A DNA MER1_type 3 226 0 5 1327 918 231 27 68 chr1 97344863 97345086 -99850346 - Lx7 LINE L1 -655 7041 6830 4 1327 205 373 27 40 chr1 97347035 97347183 -99848249 + MIRc SINE MIR 18 163 -105 5 1327 525 58 349 55 chr1 97348530 97348639 -99846793 + B1_Mus1 SINE Alu 2 142 -6 5 1327 690 94 0 0 chr1 97348642 97348759 -99846673 + (TAAA)n Simple_repeat Simple_repeat 2 118 0 5 1327 270 0 0 0 chr1 97348813 97348843 -99846589 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 5 1327 334 316 8 29 chr1 97349020 97349205 -99846227 + Lx8 LINE L1 7110 7418 -226 5 1327 306 50 0 0 chr1 97349205 97349245 -99846187 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1327 306 338 6 36 chr1 97349245 97349256 -99846176 + Lx8 LINE L1 7419 7428 -216 5 1327 207 239 0 27 chr1 97351361 97351434 -99843998 + (TTATA)n Simple_repeat Simple_repeat 2 72 0 5 1327 570 157 0 0 chr1 97352069 97352171 -99843261 + (TG)n Simple_repeat Simple_repeat 1 102 0 5 1327 1207 215 137 37 chr1 97352189 97352681 -99842751 - L1_Rod LINE L1 -379 5504 4939 5 1327 783 275 70 20 chr1 97352697 97353143 -99842289 - L1M2 LINE L1 -1514 4629 4162 5 1327 181 86 86 0 chr1 97353514 97353572 -99841860 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1327 25 65 0 0 chr1 97353574 97353620 -99841812 + AT_rich Low_complexity Low_complexity 1 46 0 5 1327 252 272 85 35 chr1 97353838 97353979 -99841453 - L1MB8 LINE L1 -164 6014 5867 5 1327 302 324 0 0 chr1 97354101 97354209 -99841223 - L1MA6 LINE L1 -45 6255 6148 5 1327 960 277 142 9 chr1 97354352 97354676 -99840756 - ORR1D2 LTR MaLR -3 367 1 5 1327 240 326 0 0 chr1 97354916 97354965 -99840467 - ID_B1 SINE B4 -97 127 79 5 1327 231 205 12 37 chr1 97354976 97355057 -99840375 + CT-rich Low_complexity Low_complexity 2 80 0 5 1327 684 190 42 0 chr1 97355088 97355230 -99840202 - B1_Mus1 SINE Alu 0 148 1 5 1327 244 292 56 99 chr1 97355277 97355482 -99839950 - L1M2 LINE L1 -3685 2458 2259 5 1327 2050 132 3 58 chr1 97355482 97355828 -99839604 - ORR1A2 LTR MaLR 0 327 1 5 1327 244 292 56 99 chr1 97355828 97355964 -99839468 - L1M2 LINE L1 -3885 2258 2132 5 1327 628 268 87 11 chr1 97356408 97356683 -99838749 + L1_Mur3 LINE L1 5238 5533 -347 5 1327 341 308 93 78 chr1 97356899 97357167 -99838265 - B4 SINE B4 -11 281 10 5 1327 2945 100 129 13 chr1 97357520 97357985 -99837447 - MURVY-LTR LTR ERV1 0 519 1 5 1327 317 386 22 22 chr1 97358565 97358700 -99836732 + RSINE1 SINE B4 4 138 -27 5 1327 31 26 0 0 chr1 97358723 97358761 -99836671 + AT_rich Low_complexity Low_complexity 1 38 0 5 1327 195 42 0 0 chr1 97359678 97359702 -99835730 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1327 315 0 0 0 chr1 97360002 97360037 -99835395 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1327 1394 313 44 2 chr1 97360081 97360562 -99834870 - Lx8 LINE L1 -10 7463 6963 5 1327 1135 89 0 0 chr1 97360824 97360970 -99834462 + B1_Mus2 SINE Alu 2 147 0 5 1327 360 0 0 0 chr1 97360973 97361013 -99834419 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1327 32 26 0 0 chr1 97361130 97361169 -99834263 + AT_rich Low_complexity Low_complexity 1 39 0 5 1327 3697 65 0 6 chr1 97361450 97361929 -99833503 - L1_Mus2 LINE L1 0 6566 6091 5 1327 3011 51 64 0 chr1 97361943 97362333 -99833099 + L1_Mus2 LINE L1 5587 6001 -565 5 1327 807 317 89 25 chr1 97362550 97363222 -99832210 - Lx8 LINE L1 -1874 5822 5077 5 1327 345 298 96 106 chr1 97364224 97364412 -99831020 + MLT1D LTR MaLR 18 203 -302 5 1327 1551 155 14 11 chr1 97364447 97364733 -99830699 + L1_Mur2 LINE L1 4939 5225 -652 5 1327 1388 169 4 18 chr1 97365170 97365442 -99829990 + L1_Mm LINE L1 5227 5494 -389 5 1327 393 230 108 41 chr1 97365811 97365842 -99829590 + Lx9 LINE L1 7435 7473 -171 5 1327 399 125 0 0 chr1 97365842 97365914 -99829518 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1327 393 230 108 41 chr1 97365914 97366077 -99829355 + Lx9 LINE L1 7474 7641 -3 5 1327 1181 55 7 0 chr1 97366375 97366521 -99828911 + B1_Mm SINE Alu 1 147 0 5 1327 210 91 0 0 chr1 97366521 97366554 -99828878 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1327 1632 27 0 0 chr1 97367509 97367697 -99827735 - B2_Mm1a SINE B2 -4 189 2 5 1327 285 75 0 0 chr1 97367874 97367914 -99827518 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 5 1327 219 204 0 0 chr1 97368571 97368620 -99826812 + (TATG)n Simple_repeat Simple_repeat 4 52 0 5 1327 2210 247 18 18 chr1 97368777 97369340 -99826092 - Lx6 LINE L1 -4 7456 6538 5 1327 880 321 21 10 chr1 97369353 97369750 -99825682 + Lx5 LINE L1 6141 6763 -697 5 1327 2651 87 20 47 chr1 97369941 97370123 -99825309 + MTB LTR MaLR 3 188 -212 5 1327 4997 83 8 20 chr1 97370123 97370832 -99824600 + L1_Mus1 LINE L1 5861 6561 -6 5 1327 2651 87 20 47 chr1 97370832 97371058 -99824374 + MTB LTR MaLR 189 400 0 5 1327 2850 255 30 4 chr1 97371067 97371789 -99823643 - Lx9 LINE L1 -281 7363 6623 5 1327 408 180 16 8 chr1 97371987 97372110 -99823322 + CT-rich Low_complexity Low_complexity 1 124 0 5 1327 342 115 0 0 chr1 97372636 97372688 -99822744 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1327 203 100 59 20 chr1 97372880 97372931 -99822501 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1327 2515 111 5 0 chr1 97373518 97373886 -99821546 + L1_Mus2 LINE L1 6190 6559 -7 5 1327 3017 40 3 3 chr1 97373885 97374260 -99821172 + L1Md_T LINE L1 6208 6582 0 5 1327 297 303 70 26 chr1 97374404 97374435 -99820997 - B4A SINE B4 -22 270 240 5 1327 531 260 31 0 chr1 97374435 97374562 -99820870 - B1_Mur2 SINE Alu -16 133 3 5 1327 297 303 70 26 chr1 97374562 97374686 -99820746 - B4A SINE B4 -53 239 110 5 1327 290 287 50 98 chr1 97375399 97375696 -99819736 + L1M5 LINE L1 5460 5742 -422 5 1327 2009 187 15 20 chr1 97375747 97376156 -99819276 + MTB_Mm LTR MaLR 1 407 0 5 1327 234 0 0 0 chr1 97377178 97377204 -99818228 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1327 1044 67 0 22 chr1 97377207 97377345 -99818087 - B1_Mm SINE Alu -11 136 2 5 1327 2215 158 17 0 chr1 97377771 97378132 -99817300 + ORR1B2 LTR MaLR 1 367 0 5 1327 22 56 0 0 chr1 97378276 97378312 -99817120 + AT_rich Low_complexity Low_complexity 1 36 0 5 1327 1379 275 8 46 chr1 97378368 97378757 -99816675 - ORR1D1 LTR MaLR 0 374 1 5 1327 3251 55 0 0 chr1 97378822 97379221 -99816211 - L1_Mus1 LINE L1 0 6567 6169 5 1327 348 24 0 0 chr1 97379914 97379955 -99815477 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 1327 216 293 0 0 chr1 97379960 97380018 -99815414 + GA-rich Low_complexity Low_complexity 1 58 0 5 1327 4190 28 34 0 chr1 97380236 97380742 -99814690 + L1Md_T LINE L1 6059 6581 -1 5 1327 31 68 0 0 chr1 97381072 97381131 -99814301 + AT_rich Low_complexity Low_complexity 1 59 0 5 1327 761 170 114 6 chr1 97381134 97381300 -99814132 + Lx3C LINE L1 6791 6974 -2 5 1327 23 0 0 0 chr1 97382046 97382069 -99813363 + AT_rich Low_complexity Low_complexity 1 23 0 5 1327 7201 165 25 27 chr1 97382949 97384298 -99811134 + Lx2B LINE L1 5654 6999 -1 5 1327 510 17 0 0 chr1 97384426 97384485 -99810947 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 5 1327 815 145 18 12 chr1 97384487 97384655 -99810777 + GA-rich Low_complexity Low_complexity 3 171 0 5 1327 1192 167 0 178 chr1 97384991 97385267 -99810165 + RMER19B LTR ERVK 1 227 -675 5 1327 2104 180 122 7 chr1 97385254 97385706 -99809726 + RMER19B LTR ERVK 380 888 -14 5 1327 1385 275 76 42 chr1 97385707 97386239 -99809193 - Lx5 LINE L1 -30 7430 6506 5 165 7763 206 53 18 chr1 97386271 97387786 -99807646 - Lx5 LINE L1 -706 6344 4726 5 1328 218 56 28 0 chr1 97387786 97387822 -99807610 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 5 1328 7763 189 45 20 chr1 97387822 97388101 -99807331 - Lx5 LINE L1 -1155 4725 4447 5 1328 2721 167 109 34 chr1 97388101 97388741 -99806691 - RMER6C LTR ERVK 0 690 3 5 1328 4823 178 59 26 chr1 97388741 97389099 -99806333 - Lx5 LINE L1 -1432 4445 4100 5 1328 1234 205 22 51 chr1 97389144 97389754 -99805678 - Lx5 LINE L1 -4462 1415 892 5 1328 22 35 0 0 chr1 97390911 97390940 -99804492 + AT_rich Low_complexity Low_complexity 1 29 0 5 1328 278 356 99 63 chr1 97391314 97391536 -99803896 - MTEa LTR MaLR -1 378 149 5 1328 422 264 0 0 chr1 97391571 97391677 -99803755 - RMER1C Other Other -22 1320 1215 5 1328 341 136 15 0 chr1 97391700 97391766 -99803666 + GA-rich Low_complexity Low_complexity 1 67 0 5 1328 1977 222 58 16 chr1 97391766 97392218 -99803214 - RMER1C Other Other -117 1225 755 5 1328 2501 228 51 19 chr1 97392863 97393448 -99801984 - Lx5 LINE L1 -4 7046 6443 5 1328 430 202 0 0 chr1 97393441 97393534 -99801898 + Lx5 LINE L1 6363 6454 -546 5 1328 497 149 9 38 chr1 97395055 97395160 -99800272 - RLTR9C LTR ERVK 0 393 292 5 1328 772 204 202 36 chr1 97395741 97396050 -99799382 - RLTR9E LTR ERVK -32 405 6 5 1328 491 79 25 62 chr1 97396081 97396162 -99799270 - ETnERV2-int LTR ERVK 0 7406 7329 5 1328 250 206 109 16 chr1 97396162 97396226 -99799206 - RLTR13B1 LTR ERVK -365 537 468 5 1328 733 217 45 40 chr1 97396250 97396480 -99798952 - RLTR13B1 LTR ERVK -487 415 153 5 1328 7173 119 15 49 chr1 97396480 97397729 -99797703 - ETnERV2-int LTR ERVK -203 7203 6101 5 1328 2025 166 49 52 chr1 97397727 97398289 -99797143 - ETnERV2-int LTR ERVK -2117 2727 2356 5 1328 2801 22 0 0 chr1 97398289 97398611 -99796821 + RLTRETN_Mm LTR ERVK 1 322 0 5 1328 1553 240 87 60 chr1 97398611 97398893 -99796539 - ETnERV2-int LTR ERVK -2552 4692 4585 5 1328 12264 73 3 3 chr1 97398893 97401196 -99794236 - L1Md_F2 LINE L1 -2 6580 4275 5 1328 2590 135 30 2 chr1 97401196 97401633 -99793799 - ETnERV2-int LTR ERVK -3517 3889 3441 5 1328 2082 133 14 118 chr1 97401668 97402125 -99793307 - ETnERV2-int LTR ERVK -3958 3448 3055 5 1328 547 267 11 70 chr1 97402125 97402310 -99793122 - ETnERV2-int LTR ERVK -4798 2608 2435 5 1328 4575 184 42 82 chr1 97402323 97403534 -99791898 - MMETn-int LTR ERVK -3681 1163 1 5 1328 1095 178 182 40 chr1 97403535 97403886 -99791546 - RLTR9E LTR ERVK 0 409 9 5 1328 3449 73 11 2 chr1 97404304 97404773 -99790659 - L1_Mus3 LINE L1 -6 6632 6160 5 1328 24 0 0 0 chr1 97405308 97405332 -99790100 + AT_rich Low_complexity Low_complexity 1 24 0 5 1328 24 32 0 0 chr1 97405969 97406000 -99789432 + AT_rich Low_complexity Low_complexity 1 31 0 5 1328 799 199 14 0 chr1 97406138 97406284 -99789148 - B1_Mur4 SINE Alu -2 148 1 5 1328 186 167 0 0 chr1 97406444 97406480 -99788952 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1328 306 0 0 0 chr1 97406684 97406718 -99788714 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5 1328 247 406 3 19 chr1 97406763 97406877 -99788555 - B1F SINE Alu 0 120 12 5 1328 255 286 65 31 chr1 97407012 97407117 -99788315 - B1F2 SINE Alu -1 116 16 5 1328 223 343 58 19 chr1 97407371 97407475 -99787957 - L3 LINE CR1 -27 4462 4355 5 1328 547 400 18 25 chr1 97407601 97407878 -99787554 - B4A SINE B4 -12 280 6 5 1328 39046 54 1 23 chr1 97407973 97414683 -99780749 - L1Md_T LINE L1 0 6582 99 5 1328 252 214 0 0 chr1 97414820 97414876 -99780556 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1328 1551 201 71 44 chr1 97414964 97415113 -99780319 - Lx9 LINE L1 -1 7643 7497 5 1328 393 22 0 0 chr1 97415113 97415159 -99780273 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1328 324 0 0 0 chr1 97415159 97415194 -99780238 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1328 324 0 0 0 chr1 97415194 97415229 -99780203 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1328 1551 201 71 44 chr1 97415229 97415530 -99779902 - Lx9 LINE L1 -148 7496 7181 5 1328 606 49 0 0 chr1 97417176 97417258 -99778174 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1328 963 281 35 40 chr1 97418322 97418697 -99776735 + MTE2a LTR MaLR 3 375 -4 6 1328 211 219 47 0 chr1 97420631 97420695 -99774737 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1328 453 36 0 0 chr1 97420712 97420767 -99774665 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1328 5013 172 13 1 chr1 97421175 97422235 -99773197 - Lx5 LINE L1 -1062 5988 4913 6 1328 2576 264 21 18 chr1 97422232 97422845 -99772587 + Lx5 LINE L1 6421 7035 -15 6 1328 198 0 0 0 chr1 97423402 97423424 -99772008 + (TAA)n Simple_repeat Simple_repeat 1 22 0 6 1328 304 339 43 27 chr1 97423837 97424022 -99771410 + Lx8 LINE L1 6967 7154 -319 6 1328 450 220 33 0 chr1 97424023 97424114 -99771318 + RMER13B LTR ERVK 815 908 0 6 1328 2642 101 56 18 chr1 97424346 97424738 -99770694 + MTB_Mm LTR MaLR 1 407 0 6 1328 220 382 115 0 chr1 97424773 97424930 -99770502 + MIRb SINE MIR 63 237 -31 6 1328 256 355 9 0 chr1 97426793 97426903 -99768529 - PB1D10 SINE Alu -2 115 5 6 1328 1223 242 115 25 chr1 97427536 97427900 -99767532 - MTD LTR MaLR -17 402 6 6 1328 2231 135 46 0 chr1 97428466 97428815 -99766617 - Lx2A1 LINE L1 -1 7007 6643 6 1328 181 188 0 0 chr1 97429706 97429738 -99765694 + L3b LINE CR1 335 366 -116 6 1328 26 30 0 0 chr1 97431770 97431803 -99763629 + AT_rich Low_complexity Low_complexity 1 33 0 6 1328 234 109 54 18 chr1 97432526 97432582 -99762850 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 6 1328 207 0 0 0 chr1 97433204 97433227 -99762205 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1328 191 173 19 0 chr1 97433615 97433667 -99761765 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 6 1328 270 0 0 0 chr1 97433784 97433814 -99761618 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 6 1328 2417 196 168 52 chr1 97433814 97434429 -99761003 - Lx4B LINE L1 -21 7037 6352 6 1328 1665 183 50 15 chr1 97434407 97434810 -99760622 + Lx4B LINE L1 5797 6222 -836 6 1328 1697 294 72 47 chr1 97435687 97435931 -99759501 - Lx8 LINE L1 -444 7029 6777 6 1328 955 228 81 122 chr1 97435931 97436341 -99759091 + RLTR9C LTR ERVK 1 393 0 6 1328 1697 294 72 47 chr1 97436341 97436862 -99758570 - Lx8 LINE L1 -697 6776 6245 6 1328 370 345 38 0 chr1 97436932 97437141 -99758291 + Lx9 LINE L1 7225 7441 -203 6 1328 23484 73 8 13 chr1 97439290 97443264 -99752168 + L1Md_F LINE L1 362 4315 -1568 6 1328 7015 48 11 2 chr1 97443264 97444153 -99751279 + L1Md_F2 LINE L1 5686 6582 0 6 1328 27 62 0 0 chr1 97444376 97444424 -99751008 + AT_rich Low_complexity Low_complexity 1 48 0 6 1328 5395 53 12 0 chr1 97444494 97445174 -99750258 - L1Md_F3 LINE L1 -14 6570 5883 6 1328 219 235 29 14 chr1 97445825 97445894 -99749538 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 6 1328 468 35 0 0 chr1 97446104 97446162 -99749270 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1328 220 83 20 20 chr1 97447133 97447182 -99748250 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1328 468 0 0 0 chr1 97447525 97447577 -99747855 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1328 201 254 0 33 chr1 97447577 97447627 -99747805 + GA-rich Low_complexity Low_complexity 14 62 0 6 1328 297 109 0 0 chr1 97447641 97447687 -99747745 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1328 326 280 0 11 chr1 97447689 97447783 -99747649 - Lx2B LINE L1 -14 6986 6894 6 1328 4561 107 19 58 chr1 97448497 97449339 -99746093 - RMER17D2 LTR ERVK 0 809 1 6 1328 29152 166 14 73 chr1 97449710 97451330 -99744102 + L1_Mus2 LINE L1 218 1681 -4202 6 1328 252 0 0 0 chr1 97451330 97451358 -99744074 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1328 29152 114 26 5 chr1 97451358 97454699 -99740733 + L1_Mus2 LINE L1 1682 5113 -770 6 1328 4485 46 18 9 chr1 97454699 97455266 -99740166 + L1Md_F3 LINE L1 5999 6570 -14 6 1328 29152 86 12 2 chr1 97455266 97456706 -99738726 + L1_Mus2 LINE L1 5114 6565 -1 6 1328 1012 109 0 0 chr1 97457892 97458030 -99737402 + B1_Mus1 SINE Alu 3 140 -8 6 1328 523 130 7 48 chr1 97458042 97458187 -99737245 + GA-rich Low_complexity Low_complexity 2 140 0 6 1328 22 0 0 0 chr1 97458839 97458861 -99736571 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 2321 179 104 22 chr1 97460820 97461312 -99734120 + RMER19B LTR ERVK 359 890 -12 6 1328 27 0 0 0 chr1 97461366 97461393 -99734039 + AT_rich Low_complexity Low_complexity 1 27 0 6 1328 236 289 13 13 chr1 97461453 97461530 -99733902 + Lx9 LINE L1 7095 7171 -473 6 1328 328 132 19 0 chr1 97462120 97462173 -99733259 - U7 snRNA snRNA -2 61 8 6 1328 954 208 79 45 chr1 97462144 97462353 -99733079 - RLTR25A LTR ERVK -207 821 602 6 1328 3435 28 2 0 chr1 97462353 97462748 -99732684 + MTA_Mm LTR MaLR 1 396 0 6 1328 2658 193 34 24 chr1 97462748 97463294 -99732138 - RLTR25A LTR ERVK -427 601 1 6 1328 441 294 104 26 chr1 97463518 97463787 -99731645 - L1M2 LINE L1 -2763 3380 3091 6 1328 776 225 12 6 chr1 97463874 97464035 -99731397 + RMER21A LTR ERV1 20 181 -766 6 1328 1879 181 65 0 chr1 97464688 97465041 -99730391 + RMER4B LTR ERVK 22 397 -188 6 1328 207 105 0 26 chr1 97468737 97468776 -99726656 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 6 1328 22 0 0 0 chr1 97468835 97468857 -99726575 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 522 267 186 47 chr1 97469233 97469555 -99725877 + ORR1D2 LTR MaLR 4 370 0 6 1328 3615 300 48 69 chr1 97470166 97472210 -99723222 - Lx9 LINE L1 -8 7636 5637 6 1328 360 64 0 0 chr1 97472229 97472276 -99723156 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1328 2064 266 34 58 chr1 97472277 97472411 -99723021 - Lx9 LINE L1 -6423 1185 1058 6 1328 1149 48 7 7 chr1 97472411 97472558 -99722874 - B1_Mm SINE Alu 0 147 1 6 1328 2064 279 52 49 chr1 97472558 97473315 -99722117 - Lx9 LINE L1 -6551 1057 443 6 1328 625 346 75 0 chr1 97474151 97474379 -99721053 + MTD LTR MaLR 18 262 -157 6 1328 1564 114 8 8 chr1 97474384 97474623 -99720809 - MTB LTR MaLR -1 399 161 6 1328 4305 189 52 36 chr1 97476989 97477945 -99717487 - Lx2B LINE L1 -5 6995 6024 6 1328 201 74 0 0 chr1 97478692 97478719 -99716713 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 6 1328 1789 218 49 32 chr1 97479294 97479856 -99715576 - Lx6 LINE L1 -1 7459 6509 6 1328 721 212 7 0 chr1 97479898 97480035 -99715397 + RMER6D LTR ERVK 583 720 0 6 1328 340 314 35 0 chr1 97480035 97480121 -99715311 + B4 SINE B4 201 289 -3 6 1328 2587 200 179 10 chr1 97480298 97480874 -99714558 + RLTR33 LTR ERVK 1 673 -5 6 1328 892 341 67 42 chr1 97481413 97482150 -99713282 + Lx8 LINE L1 5711 6465 -1008 6 1328 981 325 48 31 chr1 97482209 97482685 -99712747 - Lx8 LINE L1 -153 7320 6837 6 1328 287 49 24 0 chr1 97482912 97482953 -99712479 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1328 198 156 0 0 chr1 97483002 97483047 -99712385 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1328 192 294 38 29 chr1 97483200 97483305 -99712127 - L3 LINE CR1 -2099 2390 2285 6 1328 218 241 11 44 chr1 97484858 97484949 -99710483 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1328 183 80 0 0 chr1 97487557 97487582 -99707850 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1328 24 32 0 0 chr1 97489172 97489203 -99706229 + AT_rich Low_complexity Low_complexity 1 31 0 6 1328 26 30 0 0 chr1 97489723 97489756 -99705676 + AT_rich Low_complexity Low_complexity 1 33 0 6 1328 29 78 0 0 chr1 97489844 97489908 -99705524 + AT_rich Low_complexity Low_complexity 1 64 0 6 1328 718 316 84 44 chr1 97490229 97490573 -99704859 + Lx8 LINE L1 6268 6625 -848 6 1328 264 120 0 0 chr1 97490739 97490789 -99704643 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 6 1328 287 186 54 26 chr1 97491688 97491817 -99703615 + B1_Mus2 SINE Alu 2 148 -1 6 1328 329 113 0 19 chr1 97492580 97492634 -99702798 + RLTR33 LTR ERVK 1 53 -625 6 1328 1612 32 23 23 chr1 97492858 97493078 -99702354 + L1Md_F3 LINE L1 6365 6584 0 6 1328 221 170 65 0 chr1 97493180 97493336 -99702096 + (TA)n Simple_repeat Simple_repeat 1 166 0 6 1328 21 0 0 0 chr1 97493456 97493477 -99701955 + AT_rich Low_complexity Low_complexity 1 21 0 6 1328 1224 314 37 24 chr1 97493561 97494097 -99701335 + Lx9 LINE L1 6881 7423 -221 6 1328 251 167 15 0 chr1 97494287 97494353 -99701079 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1328 1123 68 7 7 chr1 97495624 97495771 -99699661 + B1_Mm SINE Alu 1 147 0 6 1328 191 114 23 0 chr1 97495984 97496028 -99699404 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 6 1328 336 306 10 20 chr1 97496244 97496344 -99699088 + MER31B LTR ERV1 32 130 -336 6 1328 330 246 143 14 chr1 97496352 97496492 -99698940 + MER31B LTR ERV1 276 433 -33 6 1328 386 344 65 46 chr1 97496555 97496784 -99698648 + L1MB8 LINE L1 5710 5954 -224 6 1328 4420 65 2 0 chr1 97496784 97497354 -99698078 - L1Md_F2 LINE L1 0 6582 6012 6 1328 386 344 65 46 chr1 97497354 97497541 -99697891 + L1MB8 LINE L1 5955 6134 -44 6 1328 27 29 0 0 chr1 97497681 97497715 -99697717 + AT_rich Low_complexity Low_complexity 1 34 0 6 1328 252 266 36 48 chr1 97498011 97498094 -99697338 - PB1D10 SINE Alu 0 120 39 6 1328 27 62 0 0 chr1 97499156 97499204 -99696228 + AT_rich Low_complexity Low_complexity 1 48 0 6 1328 1163 55 7 0 chr1 97499327 97499473 -99695959 + B1_Mus2 SINE Alu 1 147 0 6 1328 807 201 0 0 chr1 97499473 97499642 -99695790 + GA-rich Low_complexity Low_complexity 4 172 0 6 1328 1465 75 5 0 chr1 97499800 97500000 -99695432 + L1_Mm LINE L1 5237 5437 -446 6 1328 7365 69 8 11 chr1 97500002 97501132 -99694300 + L1_Mus2 LINE L1 5440 6566 0 1 1328 573 219 65 51 chr1 97501132 97501349 -99694083 + RMER6C LTR ERVK 326 545 -145 2 1328 3543 42 11 4 chr1 97501364 97501814 -99693618 + L1Md_F2 LINE L1 6129 6581 -1 3 1328 417 20 0 0 chr1 97502646 97502696 -99692736 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1328 398 50 33 0 chr1 97502698 97502758 -99692674 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 5 1328 366 359 0 0 chr1 97504653 97504770 -99690662 + PB1D10 SINE Alu 1 117 0 6 1328 363 23 0 0 chr1 97506107 97506151 -99689281 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1328 23 0 0 0 chr1 97506156 97506179 -99689253 + AT_rich Low_complexity Low_complexity 1 23 0 8 1328 257 49 73 0 chr1 97506229 97506270 -99689162 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 9 1328 23 33 0 0 chr1 97506299 97506329 -99689103 + AT_rich Low_complexity Low_complexity 1 30 0 1 1328 24 0 0 0 chr1 97507085 97507109 -99688323 + AT_rich Low_complexity Low_complexity 1 24 0 1 1328 234 0 0 0 chr1 97507141 97507167 -99688265 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1328 1154 36 0 0 chr1 97508795 97508933 -99686499 + B1_Mus1 SINE Alu 2 139 -9 1 1328 351 0 0 0 chr1 97508933 97508972 -99686460 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1328 810 0 0 0 chr1 97508975 97509065 -99686367 + (GAA)n Simple_repeat Simple_repeat 2 91 0 1 1328 28 0 0 0 chr1 97509467 97509495 -99685937 + AT_rich Low_complexity Low_complexity 1 28 0 1 1328 201 39 0 0 chr1 97509770 97509796 -99685636 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1328 513 88 0 0 chr1 97509829 97509909 -99685523 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1 1328 1123 70 0 0 chr1 97509913 97510055 -99685377 - B1_Mus2 SINE Alu -5 142 1 1 1328 29 0 0 0 chr1 97510696 97510725 -99684707 + AT_rich Low_complexity Low_complexity 1 29 0 2 1328 22 35 0 0 chr1 97510914 97510943 -99684489 + AT_rich Low_complexity Low_complexity 1 29 0 2 1328 24 53 0 0 chr1 97510949 97510987 -99684445 + AT_rich Low_complexity Low_complexity 1 38 0 2 1328 939 87 0 21 chr1 97511134 97511275 -99684157 + L1_Mus1 LINE L1 6426 6563 -4 2 1328 456 19 0 0 chr1 97511452 97511505 -99683927 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1328 230 266 105 11 chr1 97512791 97512886 -99682546 - MER102a DNA MER1_type -174 156 53 2 1328 290 269 0 0 chr1 97515055 97515148 -99680284 + T-rich Low_complexity Low_complexity 5 97 0 2 1328 22 0 0 0 chr1 97516190 97516212 -99679220 + AT_rich Low_complexity Low_complexity 1 22 0 2 1328 441 0 0 0 chr1 97516403 97516452 -99678980 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1328 1054 67 0 0 chr1 97516454 97516589 -99678843 - B1_Mus2 SINE Alu -11 136 2 2 1328 684 250 60 20 chr1 97516648 97517019 -99678413 + Lx9 LINE L1 7229 7637 -7 3 1329 21 0 0 0 chr1 97519253 97519274 -99676158 + AT_rich Low_complexity Low_complexity 1 21 0 3 1329 456 194 22 0 chr1 97519907 97520041 -99675391 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1329 282 227 40 40 chr1 97521843 97521929 -99673503 + PB1 SINE Alu 29 104 -23 3 1329 288 0 0 0 chr1 97522382 97522414 -99673018 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1329 1281 83 184 0 chr1 97522669 97522886 -99672546 + L1_Mus2 LINE L1 6310 6566 0 3 1329 242 304 0 29 chr1 97523138 97523243 -99672189 + CT-rich Low_complexity Low_complexity 1 102 0 3 1329 27 29 0 0 chr1 97525588 97525622 -99669810 + AT_rich Low_complexity Low_complexity 1 34 0 3 1329 22 0 0 0 chr1 97526495 97526517 -99668915 + AT_rich Low_complexity Low_complexity 1 22 0 3 1329 1153 324 73 21 chr1 97526711 97527243 -99668189 + Lx8 LINE L1 6761 7320 -153 3 1329 282 56 0 0 chr1 97527498 97527534 -99667898 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1329 1450 228 112 15 chr1 97527588 97528042 -99667390 + Lx9 LINE L1 7146 7643 -1 4 1329 8032 41 10 3 chr1 97528944 97530261 -99665171 - L1Md_F2 LINE L1 0 6582 5259 4 1329 25 51 0 0 chr1 97530755 97530794 -99664638 + AT_rich Low_complexity Low_complexity 1 39 0 4 1329 24 0 0 0 chr1 97531468 97531492 -99663940 + AT_rich Low_complexity Low_complexity 1 24 0 4 1329 8977 1 0 0 chr1 97531796 97533233 -99662199 - L1Md_A LINE L1 0 6582 5146 4 1329 285 29 0 0 chr1 97534175 97534209 -99661223 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1329 23 0 0 0 chr1 97534435 97534458 -99660974 + AT_rich Low_complexity Low_complexity 1 23 0 4 1329 235 244 32 53 chr1 97535501 97535596 -99659836 + Charlie9 DNA MER1_type 26 118 -2639 4 1329 470 284 104 12 chr1 97536562 97536726 -99658706 - B3 SINE B2 -35 181 3 4 1329 330 370 51 15 chr1 97537394 97537589 -99657843 - RMER15 LTR ERVL -13 562 361 5 1329 1526 268 27 39 chr1 97537759 97538170 -99657262 + MTD LTR MaLR 1 406 -13 5 1329 246 254 102 0 chr1 97538276 97538335 -99657097 - MLT1F-int LTR MaLR -347 1142 1078 5 1329 689 258 29 78 chr1 97539742 97539948 -99655484 + B3A SINE B2 2 197 -1 5 1329 343 329 45 62 chr1 97540850 97541028 -99654404 - MIR3 SINE MIR 0 208 34 5 1329 23 0 0 0 chr1 97541274 97541297 -99654135 + AT_rich Low_complexity Low_complexity 1 23 0 5 1329 252 86 0 0 chr1 97541798 97541833 -99653599 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1329 21 0 0 0 chr1 97543408 97543429 -99652003 + AT_rich Low_complexity Low_complexity 1 21 0 5 1329 22 0 0 0 chr1 97543931 97543953 -99651479 + AT_rich Low_complexity Low_complexity 1 22 0 5 1329 235 241 17 17 chr1 97545046 97545105 -99650327 - Tigger10 DNA Tigger -1640 203 145 5 1329 286 209 40 17 chr1 97546736 97546911 -99648521 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1329 2233 281 108 23 chr1 97546913 97547892 -99647540 + Lx9 LINE L1 6488 7472 -172 6 1329 866 186 7 0 chr1 97547963 97548103 -99647329 + B1_Mus2 SINE Alu 1 141 -6 6 1329 1533 127 67 150 chr1 97549337 97549771 -99645661 - RMER10B LTR ERVL 0 398 1 6 1329 23 54 0 0 chr1 97552891 97552928 -99642504 + AT_rich Low_complexity Low_complexity 1 37 0 6 1329 22 35 0 0 chr1 97553585 97553614 -99641818 + AT_rich Low_complexity Low_complexity 1 29 0 6 1329 423 0 0 0 chr1 97554156 97554203 -99641229 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1329 22 0 0 0 chr1 97554601 97554623 -99640809 + AT_rich Low_complexity Low_complexity 1 22 0 6 1329 22 0 0 0 chr1 97558807 97558829 -99636603 + AT_rich Low_complexity Low_complexity 1 22 0 6 1329 582 34 0 33 chr1 97561553 97561645 -99633787 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1329 423 0 0 0 chr1 97563146 97563193 -99632239 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 7 1329 450 0 0 0 chr1 97563468 97563518 -99631914 + (CCA)n Simple_repeat Simple_repeat 1 50 0 7 1329 369 0 0 0 chr1 97565022 97565063 -99630369 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1329 252 0 0 0 chr1 97566430 97566458 -99628974 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1329 376 331 50 0 chr1 97566528 97566649 -99628783 + RSINE1 SINE B4 4 130 -35 7 1329 492 59 0 0 chr1 97566663 97566731 -99628701 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1329 2169 107 28 3 chr1 97567900 97568218 -99627214 + ORR1A2 LTR MaLR 2 327 0 7 1329 236 222 0 18 chr1 97569472 97569527 -99625905 + GA-rich Low_complexity Low_complexity 3 56 0 7 1329 491 0 17 0 chr1 97569567 97569626 -99625806 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 1329 333 140 0 0 chr1 97569634 97569691 -99625741 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1329 23 0 0 0 chr1 97570478 97570501 -99624931 + AT_rich Low_complexity Low_complexity 1 23 0 8 1329 736 228 220 13 chr1 97570747 97570983 -99624449 + ORR1D1 LTR MaLR 90 374 0 8 1329 469 287 17 0 chr1 97570987 97571102 -99624330 - B3 SINE B2 -2 214 98 8 1329 339 85 0 0 chr1 97572171 97572218 -99623214 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1329 308 246 146 160 chr1 97572295 97572508 -99622924 - B3 SINE B2 -5 211 2 8 1329 680 271 23 78 chr1 97573093 97573349 -99622083 + RLTR11B LTR ERVK 1 242 -211 8 1329 296 327 26 56 chr1 97573429 97573662 -99621770 + RLTR12B LTR ERVK 301 526 -2 8 1329 22 0 0 0 chr1 97573874 97573896 -99621536 + AT_rich Low_complexity Low_complexity 1 22 0 8 1329 6600 41 4 0 chr1 97573896 97574693 -99620739 + L1Md_F2 LINE L1 5779 6578 -4 8 1329 359 385 6 18 chr1 97575084 97575248 -99620184 - LTR16B2 LTR ERVL -278 184 23 8 1329 22 0 0 0 chr1 97575298 97575320 -99620112 + AT_rich Low_complexity Low_complexity 1 22 0 9 1329 535 315 69 51 chr1 97575782 97576056 -99619376 + MLT1A0 LTR MaLR 85 363 -2 9 1329 3611 212 47 7 chr1 97576201 97576339 -99619093 - Lx9 LINE L1 -8 7636 7478 9 1329 219 114 0 0 chr1 97576339 97576374 -99619058 + (TATG)n Simple_repeat Simple_repeat 2 36 0 9 1329 3611 212 47 7 chr1 97576374 97577061 -99618371 - Lx9 LINE L1 -167 7477 6779 9 1329 1129 48 21 0 chr1 97577785 97577930 -99617502 + B1_Mus1 SINE Alu 1 148 0 9 1329 441 0 0 0 chr1 97577932 97577981 -99617451 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1329 1848 160 38 0 chr1 97577981 97578300 -99617132 + ORR1A1 LTR MaLR 16 346 0 9 1329 3522 142 25 15 chr1 97578300 97578732 -99616700 + ORR1A1-int LTR MaLR 1 433 -1530 9 1329 198 0 0 0 chr1 97578732 97578754 -99616678 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1329 3522 142 25 15 chr1 97578754 97578928 -99616504 + ORR1A1-int LTR MaLR 434 613 -1350 9 1329 313 200 38 0 chr1 97579382 97579462 -99615970 - Lx7 LINE L1 0 7696 7614 9 1329 483 18 0 0 chr1 97579612 97579668 -99615764 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1329 5676 250 61 42 chr1 97579676 97580028 -99615404 - Lx7 LINE L1 -289 7407 7053 9 1329 192 40 0 0 chr1 97580028 97580053 -99615379 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1329 5676 250 61 42 chr1 97580053 97581347 -99614085 - Lx7 LINE L1 -644 7052 5730 9 1329 896 245 70 19 chr1 97581348 97581664 -99613768 - Lx7 LINE L1 -911 4969 4638 9 1329 692 286 194 46 chr1 97582754 97583092 -99612340 - L1MA9 LINE L1 -114 6198 5789 1 1329 414 39 0 0 chr1 97583092 97583144 -99612288 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1329 692 286 194 46 chr1 97583144 97583542 -99611890 - L1MA9 LINE L1 -524 5788 5353 1 1329 272 306 0 0 chr1 97583583 97583645 -99611787 + B3A SINE B2 2 63 -135 1 1329 665 312 31 0 chr1 97583754 97583914 -99611518 + B3 SINE B2 52 216 0 1 1329 460 305 82 30 chr1 97583930 97584393 -99611039 + L1M2 LINE L1 4782 5268 -875 1 1329 382 349 52 35 chr1 97584489 97584661 -99610771 + B3A SINE B2 7 181 -17 1 1329 45 0 0 0 chr1 97584676 97584721 -99610711 + AT_rich Low_complexity Low_complexity 1 45 0 1 1329 318 106 0 0 chr1 97584732 97584779 -99610653 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1 1329 1357 171 28 66 chr1 97585793 97586081 -99609351 - Lx4A LINE L1 -1 7057 6781 1 1329 3603 105 2 4 chr1 97586076 97586604 -99608828 - L1Md_F LINE L1 -370 5513 4987 1 1329 180 0 0 0 chr1 97586604 97586624 -99608808 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1329 8719 134 10 12 chr1 97586624 97588753 -99606679 - L1Md_F LINE L1 -3292 2591 667 1 1329 1253 226 29 130 chr1 97590555 97590971 -99604461 + ORR1D1 LTR MaLR 1 374 0 1 1329 2128 108 15 6 chr1 97591732 97592057 -99603375 + IAPLTR1a_Mm LTR ERVK 1 328 -9 1 1329 21602 45 34 14 chr1 97592058 97594777 -99600655 + IAPEz-int LTR ERVK 1 2774 -3707 1 1329 3102 20 0 0 chr1 97594775 97595132 -99600300 + IAPEz-int LTR ERVK 4001 4357 -2124 1 1329 5441 78 33 13 chr1 97595123 97595879 -99599553 + IAPEz-int LTR ERVK 5709 6479 -2 1 1329 2128 108 15 6 chr1 97595881 97596206 -99599226 + IAPLTR1a_Mm LTR ERVK 1 328 -9 1 1329 2500 193 36 82 chr1 97596214 97596823 -99598609 - RMER20B LTR ERVK -46 581 1 1 1329 1640 304 84 19 chr1 97597069 97597689 -99597743 + Lx7 LINE L1 6481 7140 -556 1 1329 757 215 35 0 chr1 97598125 97598297 -99597135 - ORR1D1 LTR MaLR -196 178 1 1 1329 3479 222 134 70 chr1 97598661 97599609 -99595823 - RMER1A Other Other -5 1025 17 1 1329 1178 193 41 0 chr1 97599775 97599847 -99595585 - Lx4A LINE L1 -652 6406 6325 1 1329 621 58 0 0 chr1 97599847 97599933 -99595499 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1329 1178 193 41 0 chr1 97599933 97600104 -99595328 - Lx4A LINE L1 -734 6324 6154 1 1329 3482 165 40 9 chr1 97600110 97600739 -99594693 + Lx4A LINE L1 6409 7056 -2 1 1329 25 31 0 0 chr1 97601902 97601934 -99593498 + AT_rich Low_complexity Low_complexity 1 32 0 1 1329 1005 276 154 25 chr1 97603269 97603742 -99591690 + RMER5 LTR ERV1 1 534 0 1 1329 244 329 47 7 chr1 97604520 97604670 -99590762 - L1M5 LINE L1 -970 5474 5319 1 1329 567 122 34 34 chr1 97604731 97604909 -99590523 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 1329 361 167 26 0 chr1 97604986 97605064 -99590368 - L1MA9 LINE L1 -161 6151 6072 1 1329 357 305 51 70 chr1 97605058 97605315 -99590117 - L1M2 LINE L1 -481 5810 5559 1 1329 875 298 78 14 chr1 97605417 97605764 -99589668 + ORR1D2 LTR MaLR 2 370 0 1 1329 1151 300 67 72 chr1 97605764 97606229 -99589203 + ORR1D2-int LTR MaLR 2 471 -899 1 1329 588 65 0 0 chr1 97606229 97606306 -99589126 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1329 1151 300 67 72 chr1 97606306 97606439 -99588993 + ORR1D2-int LTR MaLR 472 597 -773 1 1329 353 272 169 39 chr1 97606628 97606758 -99588674 + B1F2 SINE Alu 3 149 0 1 1329 495 33 0 0 chr1 97606784 97606845 -99588587 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 1 1329 444 37 0 0 chr1 97607167 97607221 -99588211 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1329 747 0 0 0 chr1 97608455 97608538 -99586894 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1329 729 185 0 0 chr1 97608776 97608954 -99586478 + CT-rich Low_complexity Low_complexity 2 179 0 1 1329 369 0 0 0 chr1 97608954 97608995 -99586437 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1329 342 307 89 35 chr1 97609323 97609492 -99585940 - LTR33A LTR ERVL -324 196 19 1 1329 5021 64 15 3 chr1 97609929 97610587 -99584845 - L1Md_F2 LINE L1 -2 6580 5915 1 1329 4335 62 2 0 chr1 97610587 97611138 -99584294 + L1Md_F2 LINE L1 5310 5861 -22 1 1329 283 314 60 75 chr1 97611766 97611900 -99583532 - B1F SINE Alu -12 137 6 1 1329 839 201 101 42 chr1 97612139 97612425 -99583007 - MTD-int LTR MaLR -2 1256 954 1 1329 1293 178 14 28 chr1 97612398 97612681 -99582751 + RMER6A LTR ERVK 365 643 -113 1 1329 1817 262 71 45 chr1 97612683 97613297 -99582135 - MTD-int LTR MaLR -295 963 243 1 1329 37 23 0 0 chr1 97613297 97613341 -99582091 + AT_rich Low_complexity Low_complexity 1 44 0 1 1329 4642 82 3 0 chr1 97613345 97613968 -99581464 - Lx3_Mus LINE L1 -8 7001 6377 1 1329 5282 77 18 3 chr1 97613968 97614856 -99580576 + Lx3_Mus LINE L1 5445 6344 -665 1 1329 718 251 90 68 chr1 97614856 97615134 -99580298 - MTD-int LTR MaLR -974 284 1 1 1329 1594 272 32 12 chr1 97615138 97615540 -99579892 - MTD LTR MaLR -8 411 2 1 1329 267 242 0 15 chr1 97616533 97616600 -99578832 - MamGypLTR2c LTR Gypsy -10 1058 993 1 1329 492 63 0 0 chr1 97616941 97617004 -99578428 + Lx3B LINE L1 6626 6688 -285 1 1329 3401 127 61 102 chr1 97617004 97617846 -99577586 + RLTR13D4 LTR ERVK 1 1033 0 1 1329 1309 158 134 0 chr1 97617846 97618100 -99577332 + Lx3B LINE L1 6683 6970 -3 1 1329 935 140 24 0 chr1 97618378 97618542 -99576890 + L1_Mus3 LINE L1 6467 6634 -4 1 1329 577 270 59 11 chr1 97619001 97619188 -99576244 - B3A SINE B2 0 198 3 1 1329 1573 169 127 3 chr1 97619241 97619556 -99575876 + Lx4A LINE L1 6705 7058 0 1 1329 27 0 0 0 chr1 97619557 97619584 -99575848 + AT_rich Low_complexity Low_complexity 1 27 0 1 1329 727 206 156 0 chr1 97619607 97619806 -99575626 + Lx9 LINE L1 7407 7636 -8 1 1329 1220 34 0 0 chr1 97619935 97620082 -99575350 - B1_Mus2 SINE Alu 0 147 1 1 1329 233 422 0 0 chr1 97620142 97620232 -99575200 + MLT1E2 LTR MaLR 378 467 -160 1 1329 183 100 0 0 chr1 97621202 97621232 -99574200 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 1329 2697 193 44 9 chr1 97622913 97623441 -99571991 + Lx5 LINE L1 6305 6850 -200 1 1329 5654 78 7 66 chr1 97623747 97624600 -99570832 - RLTR13B4 LTR ERVK 0 803 1 1 1329 237 186 0 67 chr1 97624736 97624811 -99570621 + Lx7 LINE L1 5945 6014 -1682 1 1329 2158 153 89 19 chr1 97624811 97625276 -99570156 - RMER6A LTR ERVK 0 756 299 1 1329 377 191 16 0 chr1 97625313 97625376 -99570056 + ORR1B2 LTR MaLR 20 83 -284 1 1329 422 193 0 11 chr1 97625386 97625475 -99569957 + ORR1B2 LTR MaLR 278 365 -2 1 1329 1961 229 10 0 chr1 97626492 97626876 -99568556 + Lx5 LINE L1 6370 6757 -293 1 1329 2636 82 32 10 chr1 97626877 97627282 -99568150 - BGLII LTR ERVK -7 414 1 1 1329 1139 261 11 21 chr1 97627282 97627568 -99567864 + Lx5 LINE L1 6760 7042 -8 1 1329 746 267 78 88 chr1 97628768 97629142 -99566290 + ORR1D2 LTR MaLR 1 370 0 1 1329 1491 266 15 73 chr1 97629142 97629192 -99566240 + ORR1D2-int LTR MaLR 1 39 -1331 1 1329 2006 136 0 61 chr1 97629192 97629536 -99565896 - ORR1A3 LTR MaLR -3 323 1 1 1329 1491 266 15 73 chr1 97629536 97630008 -99565424 + ORR1D2-int LTR MaLR 40 493 -877 1 1329 316 192 30 7 chr1 97630576 97630646 -99564786 - B1_Mm SINE Alu -1 146 53 1 1329 271 315 122 64 chr1 97631178 97631334 -99564098 - B4 SINE B4 -126 166 2 1 1329 216 0 0 0 chr1 97631339 97631363 -99564069 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1329 554 339 48 96 chr1 97631426 97631801 -99563631 + Lx8 LINE L1 6922 7278 -195 1 1329 4382 164 97 26 chr1 97632053 97632725 -99562707 + L1_Mus2 LINE L1 410 1083 -5555 1 1329 189 0 0 0 chr1 97632725 97632746 -99562686 + (ATG)n Simple_repeat Simple_repeat 1 21 0 1 1329 28172 128 24 26 chr1 97632746 97638185 -99557247 + L1_Mus2 LINE L1 1084 6565 -1 1 1329 1726 128 16 83 chr1 97638677 97639074 -99556358 - ORR1A2 LTR MaLR 0 394 6 1 1329 21 0 0 0 chr1 97639137 97639158 -99556274 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 676 90 143 0 chr1 97639185 97639318 -99556114 - L1_Mus3 LINE L1 -3 6635 6484 1 1329 725 89 184 8 chr1 97639619 97639744 -99555688 - B1_Mus1 SINE Alu 0 148 2 1 1329 1326 181 50 53 chr1 97639918 97640275 -99555157 + ORR1A4 LTR MaLR 3 386 -8 1 1329 603 310 29 5 chr1 97640331 97640535 -99554897 - B3 SINE B2 -6 210 2 1 1329 338 295 0 0 chr1 97640545 97640640 -99554792 + (TATG)n Simple_repeat Simple_repeat 2 96 0 1 1329 3892 150 60 14 chr1 97641295 97641984 -99553448 + RMER6D LTR ERVK 1 720 0 1 1329 950 211 15 5 chr1 97642450 97642645 -99552787 + RMER6-int LTR ERVK 68 264 -2913 1 1329 2114 149 6 0 chr1 97642639 97642981 -99552451 + RMER6-int LTR ERVK 2780 3123 -54 1 1329 655 214 15 0 chr1 97642999 97643130 -99552302 + RMER6D LTR ERVK 566 698 -58 1 1329 391 347 47 0 chr1 97643955 97644105 -99551327 - LTR33A LTR ERVL 0 520 364 1 1329 528 77 0 0 chr1 97644572 97644650 -99550782 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1329 387 260 28 12 chr1 97644665 97644815 -99550617 + L1MDa LINE L1 1637 1913 -4720 1 1329 2302 203 57 7 chr1 97644915 97645520 -99549912 - Lx7 LINE L1 -1647 6049 5418 1 1329 320 271 55 47 chr1 97645855 97645983 -99549449 + RLTR23 LTR ERV1 286 414 -16 1 1329 2056 162 15 10 chr1 97645983 97646382 -99549050 - Lx7 LINE L1 -483 5397 4997 1 1329 2944 248 136 26 chr1 97646394 97646851 -99548581 + Lx6 LINE L1 6477 7000 -460 1 1329 3063 61 2 8 chr1 97646851 97647249 -99548183 + MTA_Mm LTR MaLR 1 396 0 1 1329 2944 248 136 26 chr1 97647249 97647674 -99547758 + Lx6 LINE L1 7001 7456 -4 1 1329 2294 228 62 143 chr1 97647706 97648065 -99547367 + RLTR25A LTR ERVK 95 635 -468 1 1329 1892 65 4 0 chr1 97648065 97648310 -99547122 - L1_Mus2 LINE L1 0 6566 6321 1 1329 2294 145 28 220 chr1 97648310 97648349 -99547083 + RLTR25A LTR ERVK 636 674 -429 1 1329 1327 80 6 0 chr1 97648349 97648524 -99546908 + B2_Mm1t SINE B2 4 179 -14 1 166 2294 145 28 220 chr1 97648524 97649069 -99546363 + RLTR25A LTR ERVK 675 1103 0 1 1330 309 261 141 34 chr1 97649071 97649369 -99546063 + L1MDa LINE L1 2221 2550 -4083 1 1330 390 289 96 72 chr1 97649405 97649696 -99545736 + L1MDa LINE L1 2623 2920 -3617 1 1330 282 109 0 98 chr1 97650452 97650466 -99544966 + RLTR11A LTR ERVK 1 14 -514 1 1330 3824 176 91 31 chr1 97650466 97651316 -99544116 - RMER19B LTR ERVK 0 902 2 1 1330 282 109 0 98 chr1 97651316 97651357 -99544075 + RLTR11A LTR ERVK 15 50 -478 1 1330 1041 92 26 0 chr1 97651357 97651510 -99543922 + L1_Mus2 LINE L1 6410 6566 0 1 1330 1749 184 69 8 chr1 97651510 97651871 -99543561 + RLTR11A LTR ERVK 145 527 -1 1 1330 25260 148 22 7 chr1 97651906 97656037 -99539395 - Lx LINE L1 0 6654 2464 1 1330 180 0 0 0 chr1 97656037 97656057 -99539375 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1330 25260 147 29 9 chr1 97656057 97658073 -99537359 - Lx LINE L1 -3420 2463 401 1 1330 21 0 0 0 chr1 97660519 97660540 -99534892 + AT_rich Low_complexity Low_complexity 1 21 0 1 1330 7691 54 18 0 chr1 97660602 97661771 -99533661 - L1Md_F2 LINE L1 -14 6568 5379 1 1330 529 283 101 0 chr1 97662217 97662355 -99533077 - B3 SINE B2 -57 159 8 1 1330 565 177 115 0 chr1 97662733 97662846 -99532586 + B1_Mus1 SINE Alu 22 147 -1 1 1330 210 162 0 0 chr1 97664170 97664207 -99531225 + A-rich Low_complexity Low_complexity 1 37 0 1 1330 698 278 29 25 chr1 97665200 97665440 -99529992 - Lx9 LINE L1 -192 7452 7212 1 1330 702 219 6 53 chr1 97665439 97665608 -99529824 - Lx9 LINE L1 -783 6861 6701 1 1330 252 0 0 0 chr1 97665621 97665649 -99529783 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1330 1450 246 58 11 chr1 97665679 97666040 -99529392 + RMER5 LTR ERV1 13 390 -144 1 1330 195 162 0 0 chr1 97666158 97666195 -99529237 + T-rich Low_complexity Low_complexity 1 37 0 1 1330 828 240 30 20 chr1 97666781 97666981 -99528451 + RMER5 LTR ERV1 8 209 -325 1 1330 1894 157 15 59 chr1 97667146 97667484 -99527948 - ORR1A4 LTR MaLR -6 323 1 2 1330 29 60 0 0 chr1 97667670 97667720 -99527712 + AT_rich Low_complexity Low_complexity 1 50 0 2 1330 660 291 92 32 chr1 97667889 97668291 -99527141 - L1MA6 LINE L1 -245 6055 5630 2 1330 4646 142 10 54 chr1 97668308 97668400 -99527032 - L1_Mur2 LINE L1 -3731 2146 2070 2 1330 300 53 0 0 chr1 97668400 97668438 -99526994 + (TGG)n Simple_repeat Simple_repeat 1 38 0 2 1330 4646 174 26 43 chr1 97668438 97669828 -99525604 - L1_Mur2 LINE L1 -3808 2069 686 2 1330 219 139 0 0 chr1 97669956 97669992 -99525440 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1330 525 191 0 0 chr1 97670010 97670125 -99525307 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1330 21 0 0 0 chr1 97670607 97670628 -99524804 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 203 152 0 0 chr1 97670711 97670744 -99524688 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1330 258 32 0 0 chr1 97671414 97671445 -99523987 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1330 298 315 100 59 chr1 97672150 97672350 -99523082 - MT2A LTR ERVL -222 271 1 2 1330 971 318 110 10 chr1 97672514 97673003 -99522429 + Lx8 LINE L1 6827 7364 -109 2 1330 22 56 0 0 chr1 97673321 97673357 -99522075 + AT_rich Low_complexity Low_complexity 1 36 0 2 1330 2978 38 0 0 chr1 97673580 97673926 -99521506 - ORR1A0 LTR MaLR 0 346 1 2 1330 459 113 0 0 chr1 97675903 97675974 -99519458 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 2 1330 751 296 69 0 chr1 97675978 97676194 -99519238 + Lx9 LINE L1 6419 6649 -995 2 1330 1905 210 11 6 chr1 97676201 97676565 -99518867 - ORR1B2 LTR MaLR 0 367 2 2 1330 3157 247 73 5 chr1 97676571 97677494 -99517938 + Lx9 LINE L1 6653 7637 -7 2 1330 2541 172 58 6 chr1 97678685 97679181 -99516251 - L1_Mur2 LINE L1 -190 5687 5166 2 1330 730 236 136 10 chr1 97679178 97679396 -99516036 + Lx4B LINE L1 6715 7053 -5 2 1330 515 154 0 21 chr1 97679526 97679619 -99515813 + L1_Mur3 LINE L1 4027 4117 -1763 2 1330 303 302 111 77 chr1 97679645 97679925 -99515507 - RLTR18 LTR ERVK -10 606 208 2 1330 37995 14 3 7 chr1 97679927 97685328 -99510104 + L1Md_A LINE L1 214 5586 -297 2 1330 8729 18 0 0 chr1 97685329 97686324 -99509108 + L1Md_A LINE L1 5588 6582 0 2 1330 369 318 70 90 chr1 97686400 97686656 -99508776 - RLTR18 LTR ERVK -335 281 31 2 1330 2766 156 47 14 chr1 97686674 97687233 -99508199 + L1_Mur3 LINE L1 4115 4691 -1189 2 1330 21589 134 12 87 chr1 97687280 97690021 -99505411 - L1_Mus3 LINE L1 -5 6633 3865 2 1330 270 0 0 0 chr1 97690021 97690051 -99505381 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1330 21589 151 13 140 chr1 97690051 97690406 -99505026 - L1_Mus3 LINE L1 -2019 3864 3485 2 1330 887 85 8 0 chr1 97690406 97690536 -99504896 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2 1330 21589 151 13 140 chr1 97690536 97691077 -99504355 - L1_Mus3 LINE L1 -2399 3484 2970 2 1330 887 78 7 21 chr1 97691077 97691222 -99504210 + (TTC)n Simple_repeat Simple_repeat 2 144 0 2 1330 21589 151 13 140 chr1 97691222 97691234 -99504198 - L1_Mm LINE L1 -2914 2969 2969 2 1330 1413 51 0 0 chr1 97691234 97691412 -99504020 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1330 21589 153 13 131 chr1 97691412 97694411 -99501021 - L1_Mus3 LINE L1 -2914 2969 709 2 1330 327 274 6 135 chr1 97694451 97694607 -99500825 + Lx7 LINE L1 7561 7696 0 2 1330 392 280 18 61 chr1 97694790 97694904 -99500528 - PB1D10 SINE Alu 0 117 9 2 1330 240 264 0 143 chr1 97694844 97694928 -99500504 - B4A SINE B4 -143 149 78 2 1330 662 273 24 28 chr1 97695067 97695278 -99500154 - B3 SINE B2 -6 210 1 2 1330 216 0 0 0 chr1 97695590 97695614 -99499818 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1330 3675 94 2 11 chr1 97695624 97696150 -99499282 - L1Md_F2 LINE L1 -4 6578 6058 2 1330 3990 42 2 1 chr1 97696150 97696825 -99498607 + L1Md_F2 LINE L1 5372 6049 -533 2 1330 315 334 113 44 chr1 97696857 97697220 -99498212 - L1M4 LINE L1 -1777 4369 3982 2 1330 417 279 171 17 chr1 97697248 97697540 -99497892 - L1MC LINE L1 -2215 3931 3595 2 1330 235 154 31 0 chr1 97697758 97697823 -99497609 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1330 488 332 29 73 chr1 97697911 97698116 -99497316 + MTE2a LTR MaLR 1 196 -183 2 1330 377 320 15 23 chr1 97698251 97698382 -99497050 - Lx8 LINE L1 -1068 6405 6276 2 1330 252 0 0 0 chr1 97698391 97698419 -99497013 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1330 214 418 10 10 chr1 97698675 97698779 -99496653 + PB1D10 SINE Alu 1 104 -13 2 1330 433 275 97 26 chr1 97699371 97699756 -99495676 - L1MEf LINE L1 -580 5594 5185 2 1330 27 29 0 0 chr1 97699864 97699898 -99495534 + AT_rich Low_complexity Low_complexity 1 34 0 2 1330 2133 88 36 3 chr1 97699941 97700248 -99495184 + IAPLTR2b LTR ERVK 1 317 -10 2 1330 2521 116 14 19 chr1 97700264 97700719 -99494713 + IAPEz-int LTR ERVK 1 577 -5904 2 1330 1815 57 98 0 chr1 97700705 97700949 -99494483 + IAPLTR4_I LTR ERVK 915 1182 -288 2 1330 389 185 31 5 chr1 97700949 97701070 -99494362 + B1_Mus1 SINE Alu 1 127 -20 2 1330 1458 50 6 0 chr1 97701070 97701250 -99494182 + IAPEY3-int LTR ERVK 2317 2497 -5183 2 1330 7980 233 19 28 chr1 97701247 97703160 -99492272 + IAPLTR3-int LTR ERVK 4906 6801 -20 2 1330 2102 82 39 7 chr1 97703160 97703467 -99491965 + IAPLTR2b LTR ERVK 1 317 -10 2 1330 309 305 7 59 chr1 97703888 97704024 -99491408 - L1MEf LINE L1 -4089 2153 2025 2 1330 297 92 0 0 chr1 97704310 97704357 -99491075 - Lx LINE L1 -1060 5940 5894 2 1330 4593 108 51 3 chr1 97704357 97705038 -99490394 + Lx LINE L1 5935 6648 -6 2 1330 1185 325 75 20 chr1 97705077 97705582 -99489850 - MT2A LTR ERVL 0 533 1 2 1330 306 0 0 0 chr1 97706169 97706203 -99489229 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1330 33913 6 0 0 chr1 97706300 97710165 -99485267 + L1Md_A LINE L1 1722 5586 -297 2 1330 8927 7 0 0 chr1 97710165 97711161 -99484271 + L1Md_A LINE L1 5587 6582 0 2 1330 270 0 0 0 chr1 97711270 97711300 -99484132 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1330 21 36 0 0 chr1 97711502 97711530 -99483902 + AT_rich Low_complexity Low_complexity 1 28 0 2 1330 2235 184 5 12 chr1 97711642 97712049 -99483383 - ORR1A2-int LTR MaLR -147 1816 1413 2 1330 1739 127 0 0 chr1 97712037 97712304 -99483128 - ORR1A2-int LTR MaLR -1696 267 1 2 1330 1008 127 16 13 chr1 97712304 97712538 -99482894 - ORR1A2 LTR MaLR 0 326 44 2 1330 238 234 0 0 chr1 97712539 97712586 -99482846 + 5S rRNA rRNA 45 91 -30 2 1330 534 332 49 49 chr1 97712856 97713119 -99482313 + B4 SINE B4 2 264 -28 2 1330 226 219 30 30 chr1 97713612 97713711 -99481721 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 2 1330 901 229 23 0 chr1 97713716 97713934 -99481498 + Lx9 LINE L1 7274 7496 -148 2 1330 473 94 12 0 chr1 97713958 97714043 -99481389 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1330 487 50 0 0 chr1 97714456 97714516 -99480916 - L1_Mm LINE L1 -1471 4412 4353 2 1330 8852 70 8 1 chr1 97714553 97715720 -99479712 + L1Md_F2 LINE L1 4412 5586 -297 2 1330 7479 73 8 5 chr1 97715720 97716713 -99478719 + L1Md_F2 LINE L1 5587 6582 0 2 1330 3847 54 20 2 chr1 97717170 97717668 -99477764 - L1Md_F3 LINE L1 -14 6570 6064 2 1330 2312 59 0 0 chr1 97717969 97718258 -99477174 + L1_Mus1 LINE L1 6279 6567 0 2 1330 1078 286 83 65 chr1 97719349 97719890 -99475542 - Lx8 LINE L1 -2 7471 6921 2 1330 680 80 63 8 chr1 97720485 97720611 -99474821 + L1_Mus3 LINE L1 6501 6633 -5 2 1330 442 290 185 11 chr1 97721291 97721469 -99473963 - B3 SINE B2 -5 211 3 2 1330 2304 191 36 12 chr1 97721635 97722180 -99473252 + RLTR31_Mur LTR ERVK 1 561 0 2 1330 412 123 0 0 chr1 97722325 97722390 -99473042 - L1Md_F2 LINE L1 -604 5978 5914 2 1330 2040 48 4 0 chr1 97722380 97722630 -99472802 - L1_Mm LINE L1 -313 5570 5320 2 1330 2992 61 46 3 chr1 97722630 97723022 -99472410 + L1_Mus1 LINE L1 6157 6565 -2 2 1330 2571 221 64 60 chr1 97724356 97724968 -99470464 - Lx2B LINE L1 -5 6995 6377 2 1330 2705 79 106 9 chr1 97724968 97725401 -99470031 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1330 2571 221 64 60 chr1 97725401 97725473 -99469959 - Lx2B LINE L1 -624 6376 6308 2 1330 285 242 50 0 chr1 97726039 97726159 -99469273 + (TCTA)n Simple_repeat Simple_repeat 2 127 0 2 1330 882 263 48 80 chr1 97726471 97726822 -99468610 - RLTR23 LTR ERV1 0 430 91 2 1330 308 220 0 0 chr1 97726855 97726914 -99468518 - RLTR23 LTR ERV1 -338 92 34 2 1330 182 150 25 0 chr1 97727243 97727283 -99468149 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 1330 233 29 29 0 chr1 97728204 97728238 -99467194 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1330 988 0 0 0 chr1 97728705 97728812 -99466620 - U6 snRNA snRNA 0 107 1 2 1330 225 132 0 0 chr1 97729491 97729529 -99465903 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1330 960 266 117 6 chr1 97730066 97730391 -99465041 - MTD LTR MaLR -13 406 46 2 1330 30 27 0 0 chr1 97730437 97730474 -99464958 + AT_rich Low_complexity Low_complexity 1 37 0 2 1330 653 283 28 17 chr1 97730882 97731058 -99464374 - B3 SINE B2 -1 215 38 2 1330 30 0 0 0 chr1 97731784 97731814 -99463618 + AT_rich Low_complexity Low_complexity 1 30 0 2 1330 571 346 103 47 chr1 97731951 97732376 -99463056 + MLT2B1 LTR ERVL 7 455 -60 2 1330 5398 135 12 14 chr1 97732679 97733570 -99461862 - Lx3B LINE L1 -1 6972 6083 2 1330 2848 107 12 3 chr1 97733570 97734067 -99461365 + Lx3A LINE L1 5542 6072 -978 2 1330 198 0 0 0 chr1 97734520 97734542 -99460890 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1330 1293 251 64 69 chr1 97735376 97735826 -99459606 - RMER19B LTR ERVK 0 902 455 2 1330 1239 227 7 98 chr1 97735867 97736174 -99459258 - RMER19B LTR ERVK -332 279 1 2 1330 767 299 10 0 chr1 97736801 97736998 -99458434 + Lx9 LINE L1 7231 7429 -215 2 1330 313 232 70 0 chr1 97737021 97737163 -99458269 + Lx9 LINE L1 7493 7644 0 2 1330 2973 201 8 106 chr1 97737348 97738101 -99457331 + RMER6C LTR ERVK 1 679 -11 2 1330 276 77 0 0 chr1 97738189 97738228 -99457204 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1330 421 356 0 29 chr1 97738269 97738405 -99457027 - RSINE1 SINE B4 -30 135 4 2 1330 21 0 0 0 chr1 97738770 97738791 -99456641 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 210 314 129 0 chr1 97739066 97739136 -99456296 + B2_Mm2 SINE B2 1 79 -116 2 1330 1293 251 61 18 chr1 97739144 97739624 -99455808 - RLTR12B LTR ERVK 0 528 14 2 1330 32683 78 9 2 chr1 97739721 97744898 -99450534 + L1Md_F3 LINE L1 413 5586 -297 2 1330 7816 53 6 2 chr1 97744898 97745891 -99449541 + L1Md_F3 LINE L1 5587 6583 -1 2 1330 259 291 92 37 chr1 97746917 97746938 -99448494 + CYRA11_Mm Unknown Y-chromosome 151 180 -437 2 1330 737 200 62 6 chr1 97746938 97747099 -99448333 - URR1A DNA MER1_type 0 226 57 2 1330 36685 54 6 7 chr1 97747113 97753255 -99442177 - L1Md_F2 LINE L1 -3 6579 458 3 1330 373 228 15 16 chr1 97753258 97753339 -99442093 - URR1A DNA MER1_type -147 79 5 2 1330 248 293 0 79 chr1 97753394 97753483 -99441949 + ID4_ SINE ID 1 82 -1 3 1330 749 278 14 14 chr1 97753770 97753978 -99441454 - B3 SINE B2 -6 210 3 3 1330 740 170 36 12 chr1 97754279 97754446 -99440986 - Lx3_Mus LINE L1 0 7009 6839 3 1330 33376 94 5 6 chr1 97754457 97760570 -99434862 - L1Md_F2 LINE L1 -5 6577 481 3 1330 5831 97 11 9 chr1 97760578 97761421 -99434011 - Lx3_Mus LINE L1 -158 6851 6008 3 1330 967 72 0 16 chr1 97761425 97761552 -99433880 - L1_Mur1 LINE L1 -343 5543 5419 3 1330 6537 95 0 16 chr1 97761543 97762510 -99432922 - L1_Mur1 LINE L1 -1348 4538 3588 3 1330 451 181 0 12 chr1 97762510 97762594 -99432838 + RMER17D2 LTR ERVK 1 83 -726 3 1330 2654 160 34 18 chr1 97762592 97762680 -99432752 + RMER17D2 LTR ERVK 247 339 -470 3 1330 963 86 0 0 chr1 97762680 97762819 -99432613 + (TCTCC)n Simple_repeat Simple_repeat 3 141 0 3 1330 2654 160 34 18 chr1 97762819 97763284 -99432148 + RMER17D2 LTR ERVK 340 809 0 3 1330 1838 86 0 4 chr1 97763284 97763553 -99431879 - L1_Mur1 LINE L1 -2293 3593 3326 3 1330 3802 79 4 15 chr1 97763555 97763825 -99431607 + L1_Mur1 LINE L1 2366 2635 -3251 3 1330 2925 81 27 0 chr1 97763825 97764235 -99431197 + BGLII LTR ERVK 1 421 0 3 1330 3802 79 4 15 chr1 97764235 97764502 -99430930 + L1_Mur1 LINE L1 2636 2897 -2989 3 1330 827 306 55 48 chr1 97764616 97764908 -99430524 + MTD LTR MaLR 18 311 -108 3 1330 387 0 0 0 chr1 97764935 97764978 -99430454 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1330 521 314 107 48 chr1 97766912 97767119 -99428313 - L1MC1 LINE L1 -349 6159 5934 3 1330 306 0 0 0 chr1 97767119 97767153 -99428279 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1330 521 317 94 55 chr1 97767153 97767838 -99427594 - L1MC1 LINE L1 -575 5933 5233 3 1330 210 71 0 0 chr1 97767881 97767909 -99427523 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1330 396 179 0 0 chr1 97767908 97767986 -99427446 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1330 566 270 115 26 chr1 97767994 97768413 -99427019 - L1MC1 LINE L1 -1333 4988 4533 3 1330 279 235 44 0 chr1 97768522 97768590 -99426842 - L1MC1 LINE L1 -2045 4276 4206 3 1330 631 253 134 20 chr1 97768642 97768795 -99426637 - Lx9 LINE L1 -3 7641 7466 3 1330 4190 43 4 4 chr1 97768795 97769312 -99426120 - L1Md_F2 LINE L1 0 6582 6066 3 1330 631 253 134 20 chr1 97769312 97769404 -99426028 - Lx9 LINE L1 -179 7465 7369 3 1330 926 211 86 35 chr1 97769407 97769721 -99425711 + Lx9 LINE L1 5764 6093 -1551 3 1330 180 158 0 0 chr1 97770059 97770097 -99425335 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1330 267 308 139 36 chr1 97770538 97770925 -99424507 - L1MC1 LINE L1 -4847 1661 1235 3 1330 1166 62 7 0 chr1 97770944 97771089 -99424343 + B1_Mm SINE Alu 1 146 -1 3 1330 202 128 0 25 chr1 97771090 97771130 -99424302 + A-rich Low_complexity Low_complexity 4 42 0 3 1330 314 234 58 66 chr1 97771551 97771688 -99423744 - L1MC1 LINE L1 -5736 772 637 3 1330 305 179 124 33 chr1 97771752 97771873 -99423559 - Lx9 LINE L1 -1 7643 7512 3 1330 296 24 24 0 chr1 97771874 97771915 -99423517 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1330 1511 207 77 14 chr1 97771918 97772270 -99423162 - Lx9 LINE L1 -194 7450 7077 3 1330 327 260 173 39 chr1 97772372 97772528 -99422904 - L1MC1 LINE L1 -5993 515 339 3 1330 1551 234 77 5 chr1 97773045 97773435 -99421997 + MTD LTR MaLR 2 419 0 3 1330 23 0 0 0 chr1 97773513 97773536 -99421896 + AT_rich Low_complexity Low_complexity 1 23 0 3 1330 16763 50 6 2 chr1 97773992 97776800 -99418632 - L1Md_F3 LINE L1 -12 6572 3752 3 1330 21 57 0 0 chr1 97778079 97778114 -99417318 + AT_rich Low_complexity Low_complexity 1 35 0 3 1330 1282 333 97 101 chr1 97778248 97778919 -99416513 - Lx8 LINE L1 -4 7469 6890 3 1330 453 250 91 0 chr1 97778919 97779051 -99416381 - B1_Mus1 SINE Alu -3 145 2 3 1330 1282 333 97 101 chr1 97779051 97779498 -99415934 - Lx8 LINE L1 -584 6889 6432 3 166 2932 51 0 11 chr1 97779498 97779876 -99415556 + L1Md_F2 LINE L1 6207 6580 -2 3 1331 1282 333 97 101 chr1 97779876 97780493 -99414939 - Lx8 LINE L1 -1042 6431 5741 3 1331 491 333 40 23 chr1 97780520 97780695 -99414737 - B3 SINE B2 -19 197 20 3 1331 345 309 120 19 chr1 97780696 97781118 -99414314 - Lx8 LINE L1 -565 5603 5098 3 1331 1222 312 81 81 chr1 97781114 97783268 -99412164 - L1_Rod LINE L1 -2479 3368 1215 3 1331 269 312 21 14 chr1 97783335 97783478 -99411954 - L1_Rod LINE L1 -6502 1106 963 3 1331 288 0 0 0 chr1 97783622 97783654 -99411778 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1331 270 0 0 0 chr1 97783654 97783683 -99411749 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1331 315 0 0 0 chr1 97783706 97783741 -99411691 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1331 903 208 102 37 chr1 97785124 97785482 -99409950 - RMER6C LTR ERVK 0 690 287 3 1331 247 273 79 20 chr1 97785496 97785541 -99409891 - B1_Mus2 SINE Alu -24 123 18 3 1331 289 200 18 0 chr1 97785541 97785596 -99409836 - MT2B2 LTR ERVL -347 237 182 3 1331 540 219 0 0 chr1 97785718 97785841 -99409591 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 3 1331 332 292 0 0 chr1 97785851 97785947 -99409485 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 1331 240 233 117 0 chr1 97786237 97786297 -99409135 - AluG_3 SINE Alu -97 214 148 3 1331 1825 222 8 50 chr1 97787207 97787590 -99407842 - ORR1B2 LTR MaLR 0 367 1 3 1331 898 145 0 12 chr1 97787709 97787877 -99407555 + CT-rich Low_complexity Low_complexity 1 166 0 3 1331 311 222 12 0 chr1 97787890 97787971 -99407461 + CT-rich Low_complexity Low_complexity 1 82 0 3 1331 4149 251 78 3 chr1 97787971 97788166 -99407266 - Lx2B LINE L1 -1 6996 6786 3 1331 369 0 0 0 chr1 97788166 97788207 -99407225 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1331 4738 179 44 5 chr1 97788207 97789095 -99406337 - Lx2B LINE L1 -212 6785 5832 3 1331 1161 112 16 5 chr1 97789095 97789128 -99406304 - B2_Mm1t SINE B2 0 193 159 3 1331 414 0 0 0 chr1 97789128 97789174 -99406258 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1331 1161 112 16 5 chr1 97789174 97789328 -99406104 - B2_Mm1t SINE B2 -35 158 4 3 1331 3327 185 3 7 chr1 97789328 97789937 -99405495 - L1_Mur1 LINE L1 -42 5844 5238 3 1331 1360 171 8 15 chr1 97789934 97790195 -99405237 - L1_Mur1 LINE L1 -751 5126 4868 3 1331 22 35 0 0 chr1 97790201 97790230 -99405202 + AT_rich Low_complexity Low_complexity 1 29 0 3 1331 1170 296 24 6 chr1 97790711 97791044 -99404388 - Lx5 LINE L1 -64 6986 6648 3 1331 2762 73 10 5 chr1 97791044 97791430 -99404002 + RLTR10 LTR ERVK 1 388 -2 3 1331 4201 49 11 8 chr1 97791430 97792312 -99403120 + RLTR10-int LTR ERVK 20 991 -996 3 1331 2654 36 3 3 chr1 97792465 97792796 -99402636 + IAPEY_LTR LTR ERVK 55 385 0 3 1331 366 300 73 20 chr1 97792803 97793007 -99402425 + RLTR10-int LTR ERVK 847 1061 -5481 3 1331 8181 34 16 2 chr1 97793160 97794140 -99401292 + RLTR10-int LTR ERVK 993 1986 -1 3 1331 2621 56 80 45 chr1 97794140 97794515 -99400917 + RLTR10 LTR ERVK 1 388 -2 3 1331 483 301 62 7 chr1 97794516 97794660 -99400772 - Lx5 LINE L1 -396 6654 6503 3 1331 219 133 0 43 chr1 97794707 97794754 -99400678 + T-rich Low_complexity Low_complexity 3 47 0 3 1331 226 353 127 0 chr1 97794990 97795140 -99400292 - MLT1-int LTR MaLR -646 725 557 3 1331 795 355 41 12 chr1 97795382 97795724 -99399708 + MTEb LTR MaLR 28 379 0 3 1331 685 282 64 26 chr1 97795724 97795957 -99399475 + MTEb-int LTR MaLR 1 242 -1338 3 1331 1657 74 0 0 chr1 97795957 97796174 -99399258 - L1_Mm LINE L1 -3474 2409 2193 3 1331 6183 10 0 4 chr1 97796174 97796873 -99398559 + L1Md_T LINE L1 5887 6582 0 3 1331 1060 326 70 30 chr1 97796883 97797354 -99398078 + MTEb-int LTR MaLR 226 715 -865 3 1331 270 0 0 0 chr1 97797363 97797393 -99398039 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 1331 586 333 54 31 chr1 97797400 97797623 -99397809 + MTEb-int LTR MaLR 893 1120 -460 3 1331 9368 154 19 81 chr1 97797702 97797899 -99397533 + Lx2 LINE L1 2924 3127 -2750 3 1331 272 48 0 23 chr1 97797899 97797942 -99397490 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 1331 9368 154 19 81 chr1 97797942 97798017 -99397415 + Lx2 LINE L1 3128 3135 -2742 3 1331 261 0 0 0 chr1 97798017 97798046 -99397386 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 1331 9368 154 19 81 chr1 97798046 97798282 -99397150 + Lx2 LINE L1 3136 3382 -2495 3 1331 1642 190 121 86 chr1 97798282 97798713 -99396719 + RLTR41 LTR ERV1 1 446 0 3 1331 9368 154 19 81 chr1 97798713 97798811 -99396621 + Lx2 LINE L1 3383 3476 -2401 3 1331 1153 70 6 6 chr1 97798811 97798984 -99396448 + L1Md_F2 LINE L1 6410 6582 0 3 1331 9368 154 19 81 chr1 97798984 97799006 -99396426 + Lx2 LINE L1 3477 3483 -2394 3 1331 180 0 0 0 chr1 97799006 97799026 -99396406 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1331 9368 154 19 81 chr1 97799026 97800440 -99394992 + Lx2 LINE L1 3484 4844 -1033 3 1331 904 118 10 25 chr1 97800445 97800674 -99394758 - RMER17B LTR ERVK -380 526 312 3 1331 5515 141 28 8 chr1 97800674 97802221 -99393211 + Lx2 LINE L1 4914 6496 -501 3 1331 361 307 112 30 chr1 97803668 97804169 -99391263 + L1MA7 LINE L1 5085 5682 -618 3 1331 23 0 0 0 chr1 97804546 97804569 -99390863 + AT_rich Low_complexity Low_complexity 1 23 0 3 1331 201 74 0 0 chr1 97804838 97804865 -99390567 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1331 1595 207 104 13 chr1 97805343 97805729 -99389703 + MTC LTR MaLR 1 421 0 3 1331 30 77 0 0 chr1 97806647 97806712 -99388720 + AT_rich Low_complexity Low_complexity 1 65 0 3 1331 315 318 96 31 chr1 97806811 97807071 -99388361 + L1MA7 LINE L1 5608 5884 -407 3 1331 378 253 29 69 chr1 97807149 97807238 -99388194 + ORR1E LTR MaLR 79 163 -196 3 1331 310 114 0 0 chr1 97807238 97807282 -99388150 + RLTR42 LTR ERVK 3 46 -193 3 1331 698 167 0 55 chr1 97807282 97807333 -99388099 + MusHAL1 LINE L1 2230 2280 -432 3 1331 198 0 0 0 chr1 97807333 97807355 -99388077 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1331 698 167 0 55 chr1 97807355 97807449 -99387983 + MusHAL1 LINE L1 2281 2367 -345 3 1331 4336 178 21 5 chr1 97807473 97808359 -99387073 - MusHAL1 LINE L1 -718 1994 1094 3 1331 282 159 14 42 chr1 97808337 97808409 -99387023 - MusHAL1 LINE L1 -2309 403 334 3 1331 1331 242 147 13 chr1 97808391 97808946 -99386486 - L1VL4 LINE L1 -4432 1445 835 3 1331 753 352 93 40 chr1 97809186 97809789 -99385643 - MTE-int LTR MaLR -76 1504 870 3 1331 4971 124 78 14 chr1 97809803 97810655 -99384777 - RMER17A2 LTR ERVK 0 906 1 3 1331 539 401 17 31 chr1 97810755 97811108 -99384324 - MTE-int LTR MaLR -1209 371 24 3 1331 7706 66 4 3 chr1 97811553 97812837 -99382595 - L1_Mus1 LINE L1 -2 6565 5280 3 1331 192 77 0 0 chr1 97812854 97812880 -99382552 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1331 1043 108 0 13 chr1 97812882 97813032 -99382400 - B1_Mus1 SINE Alu 0 148 1 3 1331 287 302 34 0 chr1 97813096 97813215 -99382217 + L1M3 LINE L1 4691 4813 -1327 3 1331 271 367 49 24 chr1 97813887 97814010 -99381422 + RSINE1 SINE B4 2 127 -38 3 1331 30 45 0 0 chr1 97814108 97814152 -99381280 + AT_rich Low_complexity Low_complexity 1 44 0 3 1331 377 122 0 24 chr1 97814157 97814241 -99381191 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 3 1331 394 362 9 0 chr1 97814260 97814376 -99381056 - RSINE1 SINE B4 -45 120 4 3 1331 3025 80 17 0 chr1 97815249 97815663 -99379769 + BGLII LTR ERVK 1 421 0 3 1331 33 66 0 0 chr1 97815702 97815763 -99379669 + AT_rich Low_complexity Low_complexity 1 61 0 3 1331 505 325 26 21 chr1 97815782 97816015 -99379417 + Lx9 LINE L1 5741 5974 -1670 3 1331 2117 301 73 34 chr1 97816103 97816197 -99379235 + Lx8 LINE L1 6189 6291 -1182 3 1331 752 204 7 7 chr1 97816197 97816345 -99379087 - B1_Mur2 SINE Alu 0 149 2 3 1331 2117 301 73 34 chr1 97816345 97817224 -99378208 + Lx8 LINE L1 6292 7200 -273 3 1331 243 0 0 0 chr1 97817332 97817359 -99378073 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1331 198 0 0 0 chr1 97817493 97817515 -99377917 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1331 207 0 0 0 chr1 97818023 97818046 -99377386 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1331 495 0 0 0 chr1 97818574 97818629 -99376803 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1331 357 24 0 0 chr1 97818629 97818670 -99376762 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1331 660 74 28 0 chr1 97818794 97818902 -99376530 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 1331 29 0 0 0 chr1 97819534 97819563 -99375869 + AT_rich Low_complexity Low_complexity 1 29 0 4 1331 396 316 42 33 chr1 97819716 97819929 -99375503 - MER67C LTR ERV1 -24 687 473 4 1331 22 35 0 0 chr1 97820320 97820349 -99375083 + AT_rich Low_complexity Low_complexity 1 29 0 4 1331 595 323 34 38 chr1 97820596 97820889 -99374543 + B4A SINE B4 1 292 0 4 1331 440 62 0 15 chr1 97820947 97821012 -99374420 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1331 21 0 0 0 chr1 97821375 97821396 -99374036 + AT_rich Low_complexity Low_complexity 1 21 0 4 1331 994 331 140 7 chr1 97821474 97821918 -99373514 - Lx8 LINE L1 -6 7467 6937 4 1331 180 0 0 0 chr1 97821918 97821938 -99373494 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1331 994 331 140 7 chr1 97821938 97822237 -99373195 - Lx8 LINE L1 -537 6936 6625 4 1331 239 207 17 17 chr1 97822448 97822507 -99372925 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1331 247 266 12 48 chr1 97822526 97822609 -99372823 - Lx7 LINE L1 -1520 6176 6097 4 1331 3188 250 61 6 chr1 97822815 97823615 -99371817 + Lx7 LINE L1 6494 7337 -359 4 1331 1202 89 0 16 chr1 97823640 97823823 -99371609 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1331 4248 69 0 7 chr1 97823878 97824441 -99370991 - Lx8 LINE L1 -1560 5913 5358 4 1331 4835 74 1 8 chr1 97824441 97825093 -99370339 + L1Md_F2 LINE L1 5934 6581 -1 4 1331 277 231 12 25 chr1 97825109 97825189 -99370243 + Lx7 LINE L1 7613 7691 -5 4 1331 6678 87 48 4 chr1 97829336 97830291 -99365141 - RLTR13D5 LTR ERVK -26 997 1 4 1331 668 184 0 0 chr1 97830377 97830480 -99364952 + Lx3C LINE L1 6506 6608 -368 4 1331 8575 144 25 9 chr1 97830478 97832574 -99362858 + Lx2 LINE L1 4873 6995 -2 4 1331 1148 214 100 17 chr1 97832598 97832943 -99362489 + Lx3C LINE L1 6610 6974 -2 4 1331 406 181 19 0 chr1 97834820 97834925 -99360507 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1331 382 352 120 6 chr1 97836463 97836646 -99358786 - B4A SINE B4 -81 211 8 4 1331 205 260 0 20 chr1 97836664 97836715 -99358717 + CT-rich Low_complexity Low_complexity 3 52 0 4 1331 32009 85 2 11 chr1 97836904 97841920 -99353512 + L1Md_F2 LINE L1 396 5586 -297 4 1331 7391 76 4 5 chr1 97841921 97842917 -99352515 + L1Md_F2 LINE L1 5588 6582 0 4 1331 24 53 0 0 chr1 97843310 97843348 -99352084 + AT_rich Low_complexity Low_complexity 1 38 0 4 1331 461 200 0 42 chr1 97843413 97843533 -99351899 + L1_Mus4 LINE L1 6460 6574 -62 4 1331 2596 114 5 3 chr1 97844119 97844505 -99350927 + L1_Mus3 LINE L1 6252 6638 0 4 1331 368 319 14 36 chr1 97844987 97845127 -99350305 + RSINE1 SINE B4 3 139 -26 4 1331 302 321 130 10 chr1 97847830 97848022 -99347410 + MER63D DNA AcHobo 183 397 -664 4 1331 1518 161 51 30 chr1 97848034 97848329 -99347103 - Lx2B LINE L1 -491 6509 6209 4 1331 668 256 27 1 chr1 97848336 97848505 -99346927 - B3 SINE B2 -10 188 2 4 1331 309 287 58 0 chr1 97848537 97848624 -99346808 + B1F2 SINE Alu 6 97 -52 4 1331 26 0 0 0 chr1 97848992 97849018 -99346414 + AT_rich Low_complexity Low_complexity 1 26 0 4 1331 708 127 2 7 chr1 97849106 97849221 -99346211 - B1_Mus1 SINE Alu -9 111 1 4 1331 5738 97 75 8 chr1 97849251 97850323 -99345109 + Lx LINE L1 4841 6021 -633 4 1331 1441 30 0 0 chr1 97850317 97850484 -99344948 + L1Md_F2 LINE L1 5420 5586 -297 4 1331 8153 40 1 2 chr1 97850485 97851468 -99343964 + L1Md_F2 LINE L1 5588 6569 -13 4 1331 192 77 0 0 chr1 97851494 97851520 -99343912 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1331 255 313 12 0 chr1 97851605 97851688 -99343744 + GA-rich Low_complexity Low_complexity 1 84 0 4 1331 399 315 98 55 chr1 97851888 97851950 -99343482 + B4A SINE B4 6 72 -220 4 1331 486 0 0 0 chr1 97851950 97852004 -99343428 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1331 399 315 98 55 chr1 97852004 97852216 -99343216 + B4A SINE B4 73 292 0 4 1331 224 236 14 0 chr1 97852341 97852413 -99343019 + T-rich Low_complexity Low_complexity 4 76 0 4 1331 600 200 0 19 chr1 97852702 97852809 -99342623 + (CAGAGA)n Simple_repeat Simple_repeat 6 110 0 4 1331 265 333 0 25 chr1 97853004 97853084 -99342348 + BC1_Mm scRNA scRNA 3 80 -72 4 1331 474 18 0 0 chr1 97853121 97853176 -99342256 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1331 295 336 8 58 chr1 97853225 97853345 -99342087 + RSINE1 SINE B4 5 118 -47 4 1331 450 0 0 0 chr1 97853366 97853416 -99342016 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1331 1298 177 32 4 chr1 97854251 97854501 -99340931 - RLTR22_Mur LTR ERVK 0 1848 1592 4 1331 629 176 88 0 chr1 97854666 97854814 -99340618 - RLTR22_Mur LTR ERVK -855 993 833 4 1331 1793 266 29 59 chr1 97854816 97855412 -99340020 - RLTR20A2 LTR ERVK 0 578 1 4 1331 421 106 0 0 chr1 97855428 97855494 -99339938 - RLTR22_Mur LTR ERVK -1044 804 739 4 1331 4224 131 5 5 chr1 97855497 97856823 -99338609 + L1Md_A LINE L1 422 1704 -4179 4 1331 12325 61 5 0 chr1 97856904 97858504 -99336928 + L1Md_A LINE L1 3796 5403 -480 4 1331 1007 51 0 21 chr1 97858504 97858645 -99336787 + L1Md_F3 LINE L1 6433 6570 -14 4 1331 2930 180 49 94 chr1 97858645 97859422 -99336010 - RLTR22_Mur LTR ERVK -1103 745 4 4 1331 369 62 0 0 chr1 97860182 97860230 -99335202 + (CATA)n Simple_repeat Simple_repeat 4 51 0 4 1331 252 0 0 0 chr1 97860368 97860396 -99335036 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1331 1501 193 7 17 chr1 97860410 97860710 -99334722 - L1_Mur2 LINE L1 -140 5737 5441 4 1331 1076 267 44 41 chr1 97860720 97861013 -99334419 + Lx5 LINE L1 6739 7032 -18 4 1331 201 74 0 0 chr1 97861014 97861041 -99334391 + (TAAG)n Simple_repeat Simple_repeat 4 30 0 4 1331 21 0 0 0 chr1 97861453 97861474 -99333958 + AT_rich Low_complexity Low_complexity 1 21 0 4 1331 375 249 18 24 chr1 97861484 97861653 -99333779 + (TTAA)n Simple_repeat Simple_repeat 4 171 0 4 1331 522 236 7 45 chr1 97861658 97861813 -99333619 - Lx6 LINE L1 -4 7456 7308 4 1331 21 0 0 0 chr1 97862339 97862360 -99333072 + AT_rich Low_complexity Low_complexity 1 21 0 4 1331 652 87 0 0 chr1 97862370 97862462 -99332970 + L1_Mus2 LINE L1 6422 6513 -53 4 1331 608 280 46 9 chr1 97862565 97862781 -99332651 + Lx7 LINE L1 7473 7696 0 4 1331 442 311 59 16 chr1 97862814 97863000 -99332432 - B3A SINE B2 0 198 5 4 1331 289 304 35 26 chr1 97863779 97863894 -99331538 - RLTR18B LTR ERVK 0 512 397 4 1331 4129 97 70 6 chr1 97863928 97864558 -99330874 + Lx LINE L1 5981 6650 -4 4 1331 248 240 116 159 chr1 97864568 97864801 -99330631 - RLTR18B LTR ERVK -100 412 190 4 1331 6355 136 11 6 chr1 97864830 97865844 -99329588 - Lx LINE L1 -3 6651 5658 4 1331 293 274 65 57 chr1 97865850 97865974 -99329458 - RLTR18 LTR ERVK -333 283 159 4 1331 2728 112 30 41 chr1 97865966 97866457 -99328975 - RLTR44C LTR ERVK -16 486 1 4 1331 301 280 35 90 chr1 97866457 97866602 -99328830 - RLTR18 LTR ERVK -452 164 28 4 1331 1034 281 39 0 chr1 97867147 97867428 -99328004 - Lx9 LINE L1 -292 7352 7061 4 1331 1859 225 112 50 chr1 97867451 97867994 -99327438 - RMER19B LTR ERVK 0 902 326 4 1331 657 240 168 13 chr1 97867994 97868220 -99327212 - Lx9 LINE L1 -641 7003 6743 4 1331 379 320 89 33 chr1 97868694 97868907 -99326525 + MLT1B LTR MaLR 1 225 -165 4 1331 331 287 23 11 chr1 97868916 97869004 -99326428 + MLT1B LTR MaLR 334 422 -45 4 1331 285 274 91 61 chr1 97869895 97870027 -99325405 + L1M3de LINE L1 1 136 -6517 4 1331 333 362 13 20 chr1 97870380 97870532 -99324900 + L1M3de LINE L1 957 1107 -5546 4 1331 938 161 0 11 chr1 97870722 97870833 -99324599 + polypurine Low_complexity Low_complexity 1 111 0 4 1331 1494 47 0 0 chr1 97870833 97871196 -99324236 + (GAA)n Simple_repeat Simple_repeat 1 363 0 4 1331 938 161 0 11 chr1 97871196 97871262 -99324170 + polypurine Low_complexity Low_complexity 112 177 0 4 1331 1473 31 0 0 chr1 97871268 97871496 -99323936 + (GAA)n Simple_repeat Simple_repeat 1 228 0 4 1331 314 305 152 17 chr1 97871579 97871809 -99323623 + L1M3de LINE L1 1499 1759 -4894 4 1331 226 278 213 26 chr1 97872080 97872235 -99323197 + MLT1C LTR MaLR 70 253 -214 4 1331 357 231 7 37 chr1 97874209 97874344 -99321088 + Lx9 LINE L1 7514 7644 0 4 1331 6758 93 1 57 chr1 97875957 97877043 -99318389 + MusHAL1 LINE L1 1333 2357 -355 4 1331 1032 316 42 11 chr1 97877086 97877445 -99317987 + ORR1D2 LTR MaLR 1 370 0 4 1331 21 71 0 0 chr1 97877858 97877900 -99317532 + AT_rich Low_complexity Low_complexity 1 42 0 4 1331 4265 95 0 0 chr1 97878064 97878641 -99316791 + Lx3_Mus LINE L1 6433 7009 0 4 1331 897 161 7 0 chr1 97878655 97878810 -99316622 + RLTR25A LTR ERVK 715 870 -233 4 1331 16078 169 96 54 chr1 97878962 97880104 -99315328 + Lx4B LINE L1 816 2060 -3817 4 1331 432 0 0 0 chr1 97880104 97880152 -99315280 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1331 16078 164 37 74 chr1 97880152 97883056 -99312376 + Lx4B LINE L1 2061 4803 -1074 4 1331 8408 31 0 1 chr1 97883123 97884302 -99311130 - L1Md_T LINE L1 -1 6581 5404 4 1331 1040 131 6 0 chr1 97884352 97884512 -99310920 + B2_Mm2 SINE B2 1 161 -34 4 1331 219 69 0 0 chr1 97884513 97884542 -99310890 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1331 2850 163 23 27 chr1 97884562 97885235 -99310197 + Lx4B LINE L1 5288 5966 -1092 4 1331 765 183 85 0 chr1 97885439 97885592 -99309840 - ORR1B2 LTR MaLR -7 360 195 4 1331 266 133 22 0 chr1 97885615 97885660 -99309772 - ORR1B2 LTR MaLR -321 46 1 4 1331 26 93 0 0 chr1 97886115 97886190 -99309242 + AT_rich Low_complexity Low_complexity 1 75 0 4 1331 373 340 29 68 chr1 97888129 97888334 -99307098 + B3A SINE B2 2 198 0 4 1331 516 263 105 7 chr1 97888540 97888585 -99306847 + MTD LTR MaLR 20 66 -353 4 1331 351 0 0 0 chr1 97888585 97888624 -99306808 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 1331 516 263 105 7 chr1 97888624 97888731 -99306701 + MTD LTR MaLR 67 187 -232 4 1331 1478 183 16 19 chr1 97888735 97889053 -99306379 + RMER3D-int LTR ERVK 2526 2842 0 4 1331 1151 239 38 104 chr1 97889053 97889171 -99306261 + RLTR17 LTR ERVK 1 106 -586 4 1331 3924 46 36 0 chr1 97889171 97889667 -99305765 - L1Md_F2 LINE L1 0 6582 6069 4 1331 1151 239 38 104 chr1 97889667 97889941 -99305491 + RLTR17 LTR ERVK 107 367 -325 4 1331 744 12 0 0 chr1 97889941 97890026 -99305406 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 4 1331 605 247 164 6 chr1 97890029 97890212 -99305220 + MTD LTR MaLR 208 419 0 4 1331 3236 263 54 43 chr1 97890212 97891456 -99303976 + MTD-int LTR MaLR 1 1258 0 4 1331 524 237 84 0 chr1 97891482 97891613 -99303819 + MTD LTR MaLR 278 419 0 4 1331 351 0 0 0 chr1 97892270 97892309 -99303123 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1331 959 79 0 0 chr1 97892316 97892443 -99302989 + B1_Mus1 SINE Alu 1 127 -21 4 1331 428 351 20 26 chr1 97893520 97893672 -99301760 + ID_B1 SINE B4 1 151 -73 4 1331 746 284 82 0 chr1 97893689 97893883 -99301549 + B3 SINE B2 6 215 -1 4 1331 273 269 137 88 chr1 97893931 97894033 -99301399 - PB1 SINE Alu 0 120 14 4 1331 233 221 152 97 chr1 97895597 97895742 -99299690 + MER53 DNA hAT 17 169 -24 4 1331 252 339 8 87 chr1 97896200 97896326 -99299106 + MT2B LTR ERVL 126 241 -360 5 1331 497 279 18 0 chr1 97896247 97896358 -99299074 + PB1D9 SINE Alu 6 118 -2 5 1331 371 327 9 0 chr1 97897555 97897662 -99297770 + RSINE1 SINE B4 12 119 -46 5 1331 381 22 0 0 chr1 97897686 97897732 -99297700 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1331 270 0 0 0 chr1 97897732 97897762 -99297670 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1331 23 33 0 0 chr1 97897762 97897792 -99297640 + AT_rich Low_complexity Low_complexity 1 30 0 5 1331 24 32 0 0 chr1 97897894 97897925 -99297507 + AT_rich Low_complexity Low_complexity 1 31 0 5 1331 22 0 0 0 chr1 97898453 97898475 -99296957 + AT_rich Low_complexity Low_complexity 1 22 0 5 1331 695 250 342 0 chr1 97899088 97899358 -99296074 + ORR1D2 LTR MaLR 1 362 -8 5 1331 305 168 174 73 chr1 97899523 97899632 -99295800 + Lx9 LINE L1 7519 7638 -6 5 1331 306 0 0 0 chr1 97900261 97900295 -99295137 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 1331 673 98 9 0 chr1 97900306 97900418 -99295014 - L1_Mus1 LINE L1 -6 6561 6449 5 1331 1912 36 0 0 chr1 97900418 97900640 -99294792 + L1_Mus1 LINE L1 6112 6333 -234 5 1331 393 311 85 105 chr1 97900833 97901175 -99294257 + MLT1A1 LTR MaLR 69 403 -5 5 1331 304 176 138 0 chr1 97901597 97901718 -99293714 - B1F2 SINE Alu 0 149 20 5 1331 49 32 0 0 chr1 97901778 97901841 -99293591 + AT_rich Low_complexity Low_complexity 1 63 0 5 1331 2939 91 7 9 chr1 97902436 97902860 -99292572 + L1_Mus4 LINE L1 6214 6636 0 5 1331 1106 42 21 0 chr1 97902867 97903009 -99292423 + B1_Mus2 SINE Alu 3 147 0 5 1331 28 71 0 0 chr1 97903056 97903112 -99292320 + AT_rich Low_complexity Low_complexity 1 56 0 5 1331 428 0 19 0 chr1 97903751 97903803 -99291629 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1331 474 18 0 0 chr1 97903803 97903857 -99291575 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1331 351 280 202 8 chr1 97903958 97904077 -99291355 + B1_Mur2 SINE Alu 2 143 -6 5 1331 946 236 70 14 chr1 97904113 97904328 -99291104 + MTC LTR MaLR 81 307 -114 5 1331 1673 68 5 0 chr1 97905632 97905853 -99289579 + L1_Mus2 LINE L1 6345 6566 0 5 1331 22 0 0 0 chr1 97905895 97905917 -99289515 + AT_rich Low_complexity Low_complexity 1 22 0 5 1331 557 115 10 0 chr1 97905920 97906016 -99289416 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1331 653 315 72 25 chr1 97906077 97906354 -99289078 - B4A SINE B4 0 292 3 5 1331 22 0 0 0 chr1 97906482 97906504 -99288928 + AT_rich Low_complexity Low_complexity 1 22 0 5 1331 610 336 45 21 chr1 97907355 97907598 -99287834 - MLT1E2 LTR MaLR -6 621 373 5 1331 492 18 0 0 chr1 97907755 97907812 -99287620 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1331 394 281 42 21 chr1 97907828 97907970 -99287462 - B4A SINE B4 -147 145 1 5 1331 688 325 49 41 chr1 97908181 97908447 -99286985 - MTE2b LTR MaLR -107 272 5 5 1331 247 348 0 0 chr1 97908450 97908519 -99286913 - MTE2b-int LTR MaLR -5 1575 1507 5 1331 691 257 58 148 chr1 97908593 97908972 -99286460 - RMER20B LTR ERVK -49 578 234 5 1331 225 320 70 51 chr1 97909207 97909365 -99286067 - MTE2b-int LTR MaLR -72 1298 1138 5 1331 486 310 91 11 chr1 97909396 97909572 -99285860 - MTE-int LTR MaLR -236 1344 1155 5 1331 1340 149 29 198 chr1 97909595 97910080 -99285352 - RMER17C LTR ERVK -7 403 1 5 1331 498 160 64 0 chr1 97910099 97910193 -99285239 + URR1B DNA MER1_type 125 224 -1 5 1331 277 268 77 43 chr1 97910193 97910216 -99285216 - CYRA11_Mm Unknown Y-chromosome -344 273 153 5 1332 1043 83 14 7 chr1 97911173 97911318 -99284114 + B1_Mus1 SINE Alu 2 147 -1 5 1332 225 184 0 0 chr1 97911319 97911368 -99284064 + A-rich Low_complexity Low_complexity 1 49 0 5 1332 2638 178 49 25 chr1 97911394 97911942 -99283490 + RLTR31_Mm LTR ERVK 1 561 0 5 1332 1048 299 46 46 chr1 97912205 97912573 -99282859 + MTE2b LTR MaLR 8 375 -4 5 1332 754 272 238 3 chr1 97912607 97912910 -99282522 + ORR1D1 LTR MaLR 1 374 0 5 1332 309 51 0 0 chr1 97913968 97914007 -99281425 + (TCC)n Simple_repeat Simple_repeat 3 41 0 5 1332 730 265 133 52 chr1 97914134 97914480 -99280952 + ORR1D1 LTR MaLR 1 374 0 5 1332 231 357 12 0 chr1 97915240 97915324 -99280108 + RMER10B LTR ERVL 288 372 -26 5 1332 2305 245 54 20 chr1 97917063 97917654 -99277778 - RLTR18 LTR ERVK -5 611 1 5 1332 234 23 0 65 chr1 97917928 97917974 -99277458 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1332 23 33 0 0 chr1 97918826 97918856 -99276576 + AT_rich Low_complexity Low_complexity 1 30 0 5 1332 311 366 30 15 chr1 97919841 97920038 -99275394 - L1MC3 LINE L1 -288 7497 7298 5 1332 225 83 0 0 chr1 97920371 97920407 -99275025 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1332 4111 138 87 9 chr1 97920496 97921178 -99274254 + RMER19A LTR ERVK 3 737 0 5 1332 638 318 109 36 chr1 97921439 97921520 -99273912 - L1MC3 LINE L1 -976 6809 6732 5 1332 285 29 0 0 chr1 97921520 97921554 -99273878 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1332 638 318 109 36 chr1 97921554 97921968 -99273464 - L1MC3 LINE L1 -1054 6731 6278 5 1332 372 340 148 11 chr1 97922082 97922445 -99272987 - L1MC3 LINE L1 -221 6123 5707 5 1332 271 262 161 0 chr1 97923155 97923304 -99272128 + L1MD1 LINE L1 5776 5948 -294 5 1332 206 234 21 0 chr1 97924617 97924664 -99270768 + CT-rich Low_complexity Low_complexity 3 50 0 5 1332 467 300 27 0 chr1 97925432 97925542 -99269890 + B1_Mur1 SINE Alu 3 115 -34 5 1332 5275 166 10 4 chr1 97925846 97926748 -99268684 - Lx2 LINE L1 0 6997 6091 5 1332 315 49 0 0 chr1 97926813 97926854 -99268578 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1332 833 79 8 0 chr1 97928013 97928140 -99267292 + (GA)n Simple_repeat Simple_repeat 1 128 0 5 1332 497 164 48 32 chr1 97929122 97929219 -99266213 + L1Md_F2 LINE L1 6455 6553 -29 5 1332 207 0 0 0 chr1 97929219 97929242 -99266190 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1332 497 164 48 32 chr1 97929242 97929270 -99266162 + L1Md_F2 LINE L1 6554 6581 -1 5 1332 1145 50 0 0 chr1 97929347 97929487 -99265945 + B1_Mus1 SINE Alu 2 141 -7 5 1332 21 0 0 0 chr1 97930440 97930461 -99264971 + AT_rich Low_complexity Low_complexity 1 21 0 5 1332 864 202 6 0 chr1 97930571 97930883 -99264549 + (TG)n Simple_repeat Simple_repeat 1 313 0 5 1332 2350 52 26 3 chr1 97931904 97932215 -99263217 - IAPLTR2b LTR ERVK -8 319 2 5 1332 13332 90 9 8 chr1 97932224 97934049 -99261383 - IAPEz-int LTR ERVK 0 6481 4656 5 1332 1911 55 8 0 chr1 97934048 97934286 -99261146 - IAPEY3-int LTR ERVK -5183 2497 2258 5 1332 402 53 0 0 chr1 97934291 97934348 -99261084 - B1_Mus1 SINE Alu -91 57 1 5 1332 1926 59 59 0 chr1 97934348 97934601 -99260831 - IAPLTR4_I LTR ERVK -288 1182 915 5 1332 2552 125 19 11 chr1 97934587 97935039 -99260393 - IAPEz-int LTR ERVK -5904 577 1 5 1332 2497 48 35 16 chr1 97935041 97935360 -99260072 - IAPLTR2b LTR ERVK -2 325 1 5 1332 238 290 92 18 chr1 97935489 97935652 -99259780 + MLT1D LTR MaLR 290 488 -17 5 1332 532 329 133 66 chr1 97935681 97936327 -99259105 + L1M5 LINE L1 3623 4301 -1845 5 1332 897 261 5 10 chr1 97936327 97936536 -99258896 + B3 SINE B2 1 208 -8 5 1332 532 329 135 68 chr1 97936536 97937137 -99258295 + L1M5 LINE L1 4302 4951 -1195 5 1332 268 311 45 54 chr1 97937523 97937546 -99257886 - MTE-int LTR MaLR -100 1480 1463 5 1332 824 227 62 0 chr1 97937546 97937740 -99257692 - B3 SINE B2 -10 206 1 5 1332 268 311 45 54 chr1 97937740 97937828 -99257604 - MTE-int LTR MaLR -118 1462 1370 5 1332 3267 69 59 21 chr1 97937946 97938418 -99257014 - RLTR1C LTR ERV1 -13 490 1 5 1332 319 159 31 21 chr1 97938649 97938745 -99256687 + CT-rich Low_complexity Low_complexity 2 98 0 5 1332 258 81 0 0 chr1 97938745 97938782 -99256650 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1332 24 0 0 0 chr1 97939108 97939132 -99256300 + AT_rich Low_complexity Low_complexity 1 24 0 5 1332 249 186 0 0 chr1 97939257 97939327 -99256105 + A-rich Low_complexity Low_complexity 1 70 0 5 1332 2473 78 0 0 chr1 97939845 97940166 -99255266 + L1_Mus2 LINE L1 5946 6266 -300 5 1332 1833 155 76 3 chr1 97940441 97940771 -99254661 + Lx2B LINE L1 6642 6995 -5 5 1332 22 56 0 0 chr1 97940803 97940839 -99254593 + AT_rich Low_complexity Low_complexity 1 36 0 5 1332 241 133 67 0 chr1 97940885 97940930 -99254502 + PB1D7 SINE Alu 73 120 0 5 1332 201 214 13 67 chr1 97940933 97941008 -99254424 + A-rich Low_complexity Low_complexity 2 72 0 5 1332 212 259 77 66 chr1 97941152 97941167 -99254265 - B4 SINE B4 -103 189 98 5 1332 463 118 0 0 chr1 97941175 97941243 -99254189 - 4.5SRNA scRNA scRNA -15 79 12 5 1332 1037 78 0 0 chr1 97941243 97941385 -99254047 + L1_Mus1 LINE L1 6426 6567 0 5 1332 2734 90 27 0 chr1 97941568 97941979 -99253453 + BGLII_Mus LTR ERVK 1 422 0 5 1332 234 91 0 0 chr1 97942410 97942443 -99252989 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1332 567 287 19 6 chr1 97943969 97944127 -99251305 + Lx9 LINE L1 6441 6600 -1044 5 1332 240 111 40 40 chr1 97944193 97944268 -99251164 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1332 419 325 101 17 chr1 97944299 97944537 -99250895 + RMER5 LTR ERV1 253 510 -24 5 1332 572 246 190 0 chr1 97944615 97944794 -99250638 - B3 SINE B2 -3 213 1 5 1332 2418 139 39 32 chr1 97945135 97945573 -99249859 + BGLII_B LTR ERVK 1 441 0 5 1332 3174 210 62 5 chr1 97945658 97946396 -99249036 - Lx9 LINE L1 -7 7637 6858 5 1332 602 264 102 33 chr1 97946455 97946675 -99248757 + Lx7 LINE L1 5537 5771 -76 5 1332 992 174 14 5 chr1 97946675 97946888 -99248544 + Lx LINE L1 6436 6650 -4 5 1332 602 272 111 37 chr1 97946888 97946976 -99248456 + Lx7 LINE L1 5772 5903 -1793 5 1332 582 54 0 0 chr1 97947045 97947119 -99248313 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1332 429 154 0 0 chr1 97947456 97947566 -99247866 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1332 408 20 0 0 chr1 97947566 97947615 -99247817 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1332 251 229 56 111 chr1 97948438 97948468 -99246964 + MT2B LTR ERVL 136 237 -364 5 1332 369 192 39 0 chr1 97948468 97948546 -99246886 + B1_Mur4 SINE Alu 3 83 -67 5 1332 345 226 0 0 chr1 97948563 97948678 -99246754 + CT-rich Low_complexity Low_complexity 1 115 0 6 1332 573 149 0 0 chr1 97949375 97949489 -99245943 + (TG)n Simple_repeat Simple_repeat 2 115 0 6 1332 609 105 0 0 chr1 97949550 97949645 -99245787 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1332 247 276 26 0 chr1 97949740 97949816 -99245616 + RMER15 LTR ERVL 408 485 -90 6 1332 551 347 28 9 chr1 97949979 97950197 -99245235 - B4 SINE B4 -34 258 37 6 1332 937 188 236 24 chr1 97950201 97950447 -99244985 + ORR1B1 LTR MaLR 41 338 -56 6 1332 1607 219 30 9 chr1 97950468 97950804 -99244628 + Lx5 LINE L1 6708 7050 0 6 1332 245 267 65 22 chr1 97951120 97951212 -99244220 + PB1D9 SINE Alu 18 113 -7 6 1332 28 48 0 0 chr1 97951392 97951434 -99243998 + AT_rich Low_complexity Low_complexity 1 42 0 6 1332 23 68 0 0 chr1 97951930 97951974 -99243458 + AT_rich Low_complexity Low_complexity 1 44 0 6 1332 354 80 0 0 chr1 97952014 97952064 -99243368 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1332 764 11 11 0 chr1 97952064 97952156 -99243276 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 1332 311 235 240 19 chr1 97952165 97952269 -99243163 - RSINE1 SINE B4 -36 129 3 6 1332 292 370 18 6 chr1 97952274 97952445 -99242987 + Charlie4a DNA MER1_type 77 249 -259 6 1332 439 254 68 55 chr1 97952487 97952633 -99242799 - MTC LTR MaLR -68 351 204 6 1332 251 289 22 29 chr1 97952659 97952798 -99242634 - Lx7 LINE L1 0 7696 7559 6 1332 1176 252 86 0 chr1 97952839 97953164 -99242268 - Lx7 LINE L1 -336 7360 7008 6 1332 1157 55 7 0 chr1 97953900 97954046 -99241386 + B1_Mm SINE Alu 1 147 0 6 1332 189 0 0 0 chr1 97954055 97954076 -99241356 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1332 561 333 102 37 chr1 97954491 97954815 -99240617 + ORR1E LTR MaLR 3 347 -12 6 1332 3552 103 29 2 chr1 97954855 97955371 -99240061 - L1_Mus3 LINE L1 -1 6637 6108 6 1332 228 114 0 22 chr1 97955373 97955418 -99240014 + MusHAL1 LINE L1 276 319 -2393 6 1332 28 0 0 0 chr1 97956292 97956320 -99239112 + AT_rich Low_complexity Low_complexity 1 28 0 6 1332 24 32 0 0 chr1 97957613 97957644 -99237788 + AT_rich Low_complexity Low_complexity 1 31 0 6 1332 357 123 0 0 chr1 97957895 97957952 -99237480 - MTC LTR MaLR -10 411 355 6 1332 1972 205 87 118 chr1 97958017 97958646 -99236786 + RMER20B LTR ERVK 12 621 -6 6 1332 623 172 35 0 chr1 97958702 97958818 -99236614 - MTC LTR MaLR -300 121 2 6 1332 206 178 0 22 chr1 97959767 97959813 -99235619 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 6 1332 492 18 0 0 chr1 97959870 97959927 -99235505 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1332 26 74 0 0 chr1 97959961 97960015 -99235417 + AT_rich Low_complexity Low_complexity 1 54 0 6 1332 201 222 0 22 chr1 97960053 97960099 -99235333 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1332 257 37 73 18 chr1 97960336 97960391 -99235041 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1332 180 0 0 0 chr1 97960680 97960700 -99234732 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1332 28 0 0 0 chr1 97960708 97960736 -99234696 + AT_rich Low_complexity Low_complexity 1 28 0 6 1332 445 287 90 79 chr1 97960736 97960914 -99234518 - B3A SINE B2 -12 183 4 6 1332 188 376 87 76 chr1 97961475 97962051 -99233381 - L2 LINE L2 -1639 1780 1199 6 1332 2974 84 2 17 chr1 97962729 97963142 -99232290 + MTB_Mm LTR MaLR 1 407 0 6 1332 22 0 0 0 chr1 97963147 97963169 -99232263 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 279 0 0 0 chr1 97963303 97963334 -99232098 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1332 2135 152 19 3 chr1 97963368 97963737 -99231695 - Lx2B LINE L1 -1 6999 6625 6 1332 1808 224 65 10 chr1 97963944 97964423 -99231009 - Lx9 LINE L1 0 7644 7140 6 1332 290 291 115 39 chr1 97964668 97964850 -99230582 + MER3 DNA MER1_type 11 206 -3 6 1332 262 247 62 49 chr1 97965136 97965217 -99230215 + MLT1E3 LTR MaLR 69 150 -474 6 1332 237 355 8 46 chr1 97965217 97965257 -99230175 + MLT2C1 LTR ERVL 60 163 -234 6 1332 428 111 12 0 chr1 97967555 97967636 -99227796 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1332 381 387 26 21 chr1 97968068 97968361 -99227071 - Lx9 LINE L1 -275 7369 7031 6 1332 790 264 15 30 chr1 97968349 97968595 -99226837 + L1_Rod LINE L1 5489 5748 -132 6 1332 194 91 30 0 chr1 97968669 97968702 -99226730 + (GAA)n Simple_repeat Simple_repeat 2 35 0 6 1332 1132 277 26 58 chr1 97968859 97969392 -99226040 + L1_Mur3 LINE L1 4500 5015 -865 6 1332 230 0 0 32 chr1 97969678 97969709 -99225723 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 6 1332 277 100 0 20 chr1 97970933 97970984 -99224448 + Lx7 LINE L1 7647 7696 0 6 1332 7442 158 39 11 chr1 97971598 97973551 -99221881 - Lx2 LINE L1 0 6997 4995 6 1332 270 41 0 20 chr1 97973551 97973601 -99221831 - B2_Mm1t SINE B2 -5 188 140 6 1332 8017 122 43 17 chr1 97973604 97975026 -99220406 - MusHAL1 LINE L1 -487 2225 767 6 1332 1340 122 5 5 chr1 97975046 97975244 -99220188 - L1_Mus2 LINE L1 -103 6463 6266 6 1332 680 102 0 36 chr1 97975244 97975356 -99220076 + L1_Mus2 LINE L1 6457 6564 -2 6 1332 6080 6 0 0 chr1 97975658 97976336 -99219096 + L1Md_A LINE L1 5905 6582 0 6 1332 23 33 0 0 chr1 97977303 97977333 -99218099 + AT_rich Low_complexity Low_complexity 1 30 0 6 1332 669 257 88 65 chr1 97977842 97978183 -99217249 - L1M2 LINE L1 -524 5776 5428 6 1332 516 77 0 0 chr1 97978183 97978261 -99217171 + (T)n Simple_repeat Simple_repeat 1 78 0 6 1332 1097 57 43 0 chr1 97978261 97978402 -99217030 - B1_Mus1 SINE Alu 0 148 2 6 1332 3798 57 0 2 chr1 97978945 97979421 -99216011 + L1Md_F2 LINE L1 6096 6570 -12 6 1332 1419 87 0 0 chr1 97979428 97979613 -99215819 - L1_Mus1 LINE L1 -288 6279 6095 6 1332 1807 49 0 4 chr1 97979613 97979840 -99215592 + L1_Mus1 LINE L1 6342 6567 0 6 1332 194 91 30 0 chr1 97980176 97980209 -99215223 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 1332 1110 282 48 3 chr1 97980775 97981109 -99214323 - Lx6 LINE L1 0 7460 7112 6 1332 2720 175 12 40 chr1 97981376 97981953 -99213479 - RLTR31_Mm LTR ERVK 0 561 1 6 1332 22 0 0 0 chr1 97982447 97982469 -99212963 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 3601 138 0 45 chr1 97982832 97983455 -99211977 - L1_Mm LINE L1 -751 5132 4538 6 1332 4475 109 12 12 chr1 97983455 97984142 -99211290 + L1_Mus4 LINE L1 5943 6629 -7 6 1332 189 0 0 0 chr1 97984144 97984165 -99211267 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 6 1332 837 281 111 35 chr1 97985207 97985550 -99209882 + ORR1D2 LTR MaLR 2 370 0 6 1332 21 57 0 0 chr1 97986145 97986180 -99209252 + AT_rich Low_complexity Low_complexity 1 35 0 6 1332 608 305 13 83 chr1 97986532 97986761 -99208671 + ID_B1 SINE B4 12 224 0 6 1332 585 64 0 0 chr1 97986764 97986842 -99208590 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 6 1332 285 348 64 0 chr1 97987336 97987569 -99207863 + L1MC LINE L1 4496 4743 -1403 6 1332 29 28 0 0 chr1 97987731 97987767 -99207665 + AT_rich Low_complexity Low_complexity 1 36 0 6 1332 300 111 0 0 chr1 97988739 97988784 -99206648 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1332 537 121 0 0 chr1 97989305 97989388 -99206044 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1332 36614 30 2 7 chr1 97990049 97995229 -99200203 + L1Md_T LINE L1 440 5585 -298 6 1332 8273 40 1 0 chr1 97995230 97996224 -99199208 + L1Md_T LINE L1 5587 6581 -1 6 1332 254 308 26 0 chr1 97997101 97997179 -99198253 + PB1 SINE Alu 46 125 -2 6 1332 399 21 0 0 chr1 97997306 97997354 -99198078 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1332 21 0 0 0 chr1 97997766 97997787 -99197645 + AT_rich Low_complexity Low_complexity 1 21 0 6 1332 194 0 39 0 chr1 97998110 97998136 -99197296 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 1332 3492 54 9 0 chr1 97998146 97998589 -99196843 - L1Md_F2 LINE L1 0 6582 6136 6 1332 257 188 12 48 chr1 97998659 97998743 -99196689 + A-rich Low_complexity Low_complexity 3 83 0 6 1332 5897 89 6 1 chr1 97998907 97999724 -99195708 + L1_Mus3 LINE L1 5815 6635 -3 6 1332 4577 157 23 6 chr1 98001007 98001801 -99193631 + Lx LINE L1 5846 6652 -2 1 1332 241 242 0 208 chr1 98002170 98002295 -99193137 - MER53 DNA hAT -5 188 90 2 1332 3017 117 26 29 chr1 98002989 98003480 -99191952 - Lx LINE L1 -7 6647 6158 3 1332 322 258 29 58 chr1 98003715 98003888 -99191544 + L1MEe LINE L1 657 824 -4030 4 1332 192 40 0 0 chr1 98003909 98003934 -99191498 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 5 1332 1110 104 0 0 chr1 98003934 98004097 -99191335 + (GA)n Simple_repeat Simple_repeat 2 164 0 6 1332 341 250 0 65 chr1 98004097 98004204 -99191228 - L1_Mur3 LINE L1 -2371 3509 3410 7 1332 24 0 0 0 chr1 98004273 98004297 -99191135 + AT_rich Low_complexity Low_complexity 1 24 0 8 1332 4391 122 29 82 chr1 98004305 98005010 -99190422 - Lx LINE L1 -6 6648 5990 9 1332 507 17 0 0 chr1 98005010 98005070 -99190362 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1332 4391 122 29 82 chr1 98005070 98005203 -99190229 - Lx LINE L1 -665 5989 5855 9 1332 11343 110 38 18 chr1 98005203 98007690 -99187742 - L1VL4 LINE L1 -959 2600 54 1 1332 947 269 40 3 chr1 98007753 98008074 -99187358 + L1_Mur3 LINE L1 3545 3877 -2003 1 1332 528 16 0 0 chr1 98008074 98008135 -99187297 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1332 305 228 0 0 chr1 98008704 98008761 -99186671 - HAL1-3A_ME LINE L1 -827 2031 1975 1 1332 15503 53 33 2 chr1 98008823 98011540 -99183892 - L1Md_F2 LINE L1 -12 6570 3805 1 1332 2608 76 16 3 chr1 98011540 98011910 -99183522 + RLTR10 LTR ERVK 14 388 -2 1 1332 649 100 11 0 chr1 98011912 98012002 -99183430 + RLTR10-int LTR ERVK 1 91 -7490 1 1332 234 175 0 0 chr1 98012012 98012052 -99183380 + RLTR27 LTR ERVK 231 270 -39 1 1332 4221 58 0 5 chr1 98012053 98012805 -99182627 + RLTR10-int LTR ERVK 174 994 -993 1 1332 548 298 39 32 chr1 98012966 98013250 -99182182 + RLTR10-int LTR ERVK 1309 1594 -5987 1 1332 8493 34 0 3 chr1 98013334 98014332 -99181100 + RLTR10-int LTR ERVK 992 1986 -1 1 1332 2781 78 16 0 chr1 98014332 98014714 -99180718 + RLTR10 LTR ERVK 1 388 -2 1 1332 18544 98 4 16 chr1 98014716 98018280 -99177152 - L1Md_F LINE L1 -2073 3810 307 1 1332 250 327 35 0 chr1 98018327 98018440 -99176992 + Lx7 LINE L1 7580 7696 0 2 1332 722 299 5 5 chr1 98018494 98018682 -99176750 + B3 SINE B2 27 214 -2 2 1332 306 123 0 0 chr1 98018764 98018821 -99176611 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1332 407 114 0 25 chr1 98018830 98018911 -99176521 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 2 1332 460 308 34 0 chr1 98019611 98019757 -99175675 - RSINE1 SINE B4 -10 155 5 2 1332 214 311 0 32 chr1 98020073 98020136 -99175296 + L2b LINE L2 2956 3016 -359 2 1332 354 23 0 0 chr1 98020265 98020308 -99175124 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1332 29 0 0 0 chr1 98020754 98020783 -99174649 + AT_rich Low_complexity Low_complexity 1 29 0 2 1332 336 226 24 0 chr1 98020784 98020868 -99174564 + L1_Mur3 LINE L1 5264 5349 -531 2 1332 1420 0 0 0 chr1 98020878 98021047 -99174385 + L1_Mm LINE L1 1331 1499 -4384 2 1332 437 248 76 8 chr1 98021063 98021181 -99174251 + L1_Mm LINE L1 5418 5543 -340 3 1332 680 179 0 9 chr1 98021186 98021299 -99174133 + B1_Mus2 SINE Alu 35 146 -1 3 1332 308 293 49 0 chr1 98022783 98022865 -99172567 - B1F SINE Alu -63 86 1 3 1332 666 168 16 8 chr1 98023869 98023995 -99171437 + RMER4A LTR ERVK 1 127 -339 3 1332 23 68 0 0 chr1 98025141 98025185 -99170247 + AT_rich Low_complexity Low_complexity 1 44 0 3 1332 23 33 0 0 chr1 98025661 98025691 -99169741 + AT_rich Low_complexity Low_complexity 1 30 0 3 1332 351 0 0 0 chr1 98026433 98026472 -99168960 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1332 431 346 66 19 chr1 98027007 98027219 -99168213 - ID_B1 SINE B4 0 224 3 3 1332 2229 78 13 7 chr1 98027489 98027799 -99167633 - L1Md_F2 LINE L1 -10 6572 6261 3 1332 2110 144 9 3 chr1 98028010 98028331 -99167101 - Lx LINE L1 -299 6355 6033 3 1332 3004 88 37 53 chr1 98028562 98029047 -99166385 + L1Md_F2 LINE L1 6134 6582 0 4 1332 1042 110 0 0 chr1 98029187 98029333 -99166099 + B1_Mus1 SINE Alu 1 146 -2 4 1332 654 104 0 0 chr1 98029333 98029429 -99166003 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1332 455 207 16 32 chr1 98032794 98032919 -99162513 - Lx9 LINE L1 -137 7507 7385 4 1332 6386 88 17 3 chr1 98034416 98035313 -99160119 - Lx3_Mus LINE L1 0 7009 6101 4 1332 384 22 0 0 chr1 98035584 98035629 -99159803 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1332 387 0 0 0 chr1 98035629 98035671 -99159761 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1332 7852 51 9 6 chr1 98035673 98035709 -99159723 - L1Md_F2 LINE L1 -14 6568 6538 4 1332 2649 50 23 12 chr1 98035709 98036051 -99159381 - ORR1A0 LTR MaLR 0 346 1 4 166 34030 77 3 9 chr1 98036051 98042118 -99153314 - L1Md_F2 LINE L1 -45 6537 503 4 1333 22 94 0 0 chr1 98042254 98042318 -99153114 + AT_rich Low_complexity Low_complexity 1 64 0 4 1333 97 38 0 0 chr1 98042338 98042470 -99152962 + AT_rich Low_complexity Low_complexity 1 132 0 5 1333 231 299 45 0 chr1 98042593 98042660 -99152772 - B3 SINE B2 -109 107 38 5 1333 2080 311 51 71 chr1 98042742 98043981 -99151451 - Lx5 LINE L1 -38 7012 5799 5 1333 1273 205 12 0 chr1 98043981 98044239 -99151193 + L1_Mur3 LINE L1 3590 3850 -2027 5 1333 681 213 0 0 chr1 98044239 98044413 -99151019 + GA-rich Low_complexity Low_complexity 4 177 0 5 1333 278 208 0 25 chr1 98044445 98044524 -99150908 + GA-rich Low_complexity Low_complexity 6 82 0 5 1333 285 29 0 0 chr1 98044563 98044597 -99150835 + (CCA)n Simple_repeat Simple_repeat 1 34 0 5 1333 1154 176 7 44 chr1 98044608 98044881 -99150551 + L1_Mur3 LINE L1 3848 4110 -1767 5 1333 7229 117 47 7 chr1 98044862 98046721 -99148711 + L1_Mus3 LINE L1 4707 6636 -2 5 1333 2068 237 11 16 chr1 98046933 98047478 -99147954 + L1_Mur3 LINE L1 4615 5156 -721 5 1333 2754 190 24 177 chr1 98047502 98048353 -99147079 + RMER6D LTR ERVK 1 720 0 5 1333 2252 200 98 7 chr1 98048353 98048892 -99146540 + L1_Mur3 LINE L1 5178 5765 -115 5 1333 616 277 152 65 chr1 98049519 98049809 -99145623 - RMER13A LTR ERVK -534 326 12 5 1333 595 244 46 0 chr1 98050198 98050329 -99145103 - B1_Mur3 SINE Alu 0 149 13 5 1333 239 252 50 134 chr1 98050233 98050352 -99145080 - MT2B2 LTR ERVL -320 264 156 6 1333 247 303 263 0 chr1 98051865 98051964 -99143468 - B1_Mur2 SINE Alu -7 142 18 6 1333 40 67 0 0 chr1 98052757 98052832 -99142600 + AT_rich Low_complexity Low_complexity 1 75 0 6 1333 2147 135 0 0 chr1 98053053 98053364 -99142068 + RLTR10E LTR ERVK 1 311 0 6 1333 467 317 51 51 chr1 98053513 98053789 -99141643 - Lx7 LINE L1 -1145 6551 6276 6 1333 590 51 0 12 chr1 98055762 98055842 -99139590 - L1_Mus3 LINE L1 -568 6070 5992 6 1333 4075 83 28 11 chr1 98055842 98056412 -99139020 + L1_Mus3 LINE L1 6052 6631 -7 6 1333 503 190 167 6 chr1 98056428 98056608 -99138824 - Lx9 LINE L1 -6 7638 7430 6 1333 1126 233 15 134 chr1 98056637 98057033 -99138399 - RLTR11A2 LTR ERVK -30 497 149 6 1333 465 19 0 0 chr1 98057033 98057087 -99138345 + (TTA)n Simple_repeat Simple_repeat 3 56 0 6 1333 4734 61 31 0 chr1 98057087 98057707 -99137725 - L1Md_F2 LINE L1 -24 6558 5920 6 1333 487 152 254 0 chr1 98057707 98057825 -99137607 - RLTR11A2 LTR ERVK -380 148 1 6 1333 521 247 120 0 chr1 98057851 98058009 -99137423 - Lx9 LINE L1 -248 7396 7220 6 1333 32 26 0 0 chr1 98058013 98058052 -99137380 + AT_rich Low_complexity Low_complexity 1 39 0 7 1333 486 0 0 0 chr1 98058068 98058122 -99137310 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1333 2486 53 0 0 chr1 98058537 98058839 -99136593 - L1Md_F2 LINE L1 -235 6347 6046 7 1333 3430 244 18 14 chr1 98059342 98060137 -99135295 + Lx7 LINE L1 6530 7327 -369 7 1333 182 164 0 18 chr1 98060145 98060201 -99135231 + T-rich Low_complexity Low_complexity 2 56 0 7 1333 204 216 0 0 chr1 98060223 98060274 -99135158 + CT-rich Low_complexity Low_complexity 1 51 0 7 1333 336 275 30 102 chr1 98060282 98060646 -99134786 + Lx7 LINE L1 7359 7696 0 7 1333 3358 35 5 0 chr1 98060676 98061070 -99134362 + MTA_Mm LTR MaLR 1 396 0 7 1333 40 21 0 0 chr1 98061231 98061278 -99134154 + AT_rich Low_complexity Low_complexity 1 47 0 7 1333 415 330 91 29 chr1 98061409 98061749 -99133683 - L1M5 LINE L1 -474 5705 5345 7 1333 370 155 0 0 chr1 98061939 98061997 -99133435 - RLTR23 LTR ERV1 0 430 373 7 1333 1921 164 98 0 chr1 98061997 98062356 -99133076 - BGLII_B LTR ERVK 0 441 48 8 1333 919 139 12 37 chr1 98062355 98062519 -99132913 - RLTR23 LTR ERV1 -89 341 182 7 1333 654 188 77 13 chr1 98062591 98062747 -99132685 - RLTR23 LTR ERV1 -264 166 1 7 1333 403 307 112 50 chr1 98062844 98063183 -99132249 + RMER17C LTR ERVK 8 367 -43 8 1333 282 300 105 35 chr1 98064255 98064369 -99131063 - LSU-rRNA_Hsa rRNA rRNA -1407 3628 3507 8 1333 1614 210 99 26 chr1 98064644 98065059 -99130373 + RMER17C-int LTR ERVK 1718 2162 -1076 8 1333 215 417 27 36 chr1 98065144 98065256 -99130176 - B1F2 SINE Alu -37 112 2 8 1333 1182 293 60 17 chr1 98065479 98065882 -99129550 - Lx6 LINE L1 -2 7458 7039 8 1333 29921 91 34 1 chr1 98067902 98072738 -99122694 + L1Md_F2 LINE L1 591 5586 -297 8 1333 7143 89 1 13 chr1 98072739 98073732 -99121700 + L1Md_F2 LINE L1 5588 6568 -14 8 1333 29 28 0 0 chr1 98074278 98074314 -99121118 + AT_rich Low_complexity Low_complexity 1 36 0 8 1333 25 51 0 0 chr1 98074470 98074509 -99120923 + AT_rich Low_complexity Low_complexity 1 39 0 8 1333 5268 142 39 1 chr1 98076020 98076867 -99118565 - Lx2B LINE L1 -314 6686 5808 8 1333 660 168 15 0 chr1 98076871 98077002 -99118430 - MusHAL1 LINE L1 -1892 3985 3853 9 1333 2925 168 41 4 chr1 98077003 98077831 -99117601 - MusHAL1 LINE L1 -3815 2071 1143 9 1333 1930 135 119 8 chr1 98077831 98078183 -99117249 + RLTR9D LTR ERVK 1 391 -12 9 1333 1656 201 32 27 chr1 98078189 98078592 -99116840 - L1VL2 LINE L1 -5486 849 445 9 1333 1430 294 116 18 chr1 98078700 98079800 -99115632 + L1_Rod LINE L1 1028 2241 -3606 9 1333 1342 172 40 17 chr1 98079828 98080163 -99115269 + Lx2A LINE L1 6703 6999 -9 9 1333 1829 224 94 108 chr1 98080164 98080668 -99114764 - RLTR40 LTR ERVK -179 638 154 9 1333 1662 198 3 26 chr1 98080668 98081016 -99114416 - Lx LINE L1 -17 6637 6298 9 1333 1829 224 94 108 chr1 98081016 98081158 -99114274 - RLTR40 LTR ERVK -664 153 1 9 1333 3775 276 54 39 chr1 98081160 98081776 -99113656 + L1_Rod LINE L1 2237 2872 -2975 9 1333 5761 55 56 7 chr1 98081776 98082540 -99112892 + L1Md_F3 LINE L1 5769 6570 -14 9 1333 3775 276 54 39 chr1 98082540 98083818 -99111614 + L1_Rod LINE L1 2873 4160 -1687 9 1333 804 147 35 7 chr1 98083818 98083962 -99111470 + B1_Mus1 SINE Alu 1 148 0 9 1333 7005 103 1 32 chr1 98083984 98085136 -99110296 - L1_Mus1 LINE L1 -629 5938 4826 9 1333 4247 83 31 31 chr1 98085136 98085843 -99109589 + L1_Mus1 LINE L1 5944 6567 0 9 1333 348 244 192 6 chr1 98085843 98086004 -99109428 + L1_Rod LINE L1 4154 4344 -1503 9 1333 180 0 0 0 chr1 98086008 98086028 -99109404 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1333 5038 115 16 0 chr1 98086030 98086779 -99108653 - L1_Mus3 LINE L1 -7 6631 5871 1 1333 1052 32 0 0 chr1 98086779 98086905 -99108527 + L1_Mus1 LINE L1 5735 5860 -707 1 1333 1130 300 104 22 chr1 98086911 98087209 -99108223 + L1_Rod LINE L1 4378 4696 -1447 9 1333 198 91 0 0 chr1 98087209 98087242 -99108190 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 1333 1130 293 50 57 chr1 98087242 98087866 -99107566 + L1_Rod LINE L1 4640 5330 -816 9 1333 38681 19 8 1 chr1 98087859 98093220 -99102212 + Lx LINE L1 225 5586 -297 1 1333 8955 7 0 0 chr1 98093220 98094216 -99101216 + L1Md_A LINE L1 5587 6582 0 1 1333 38681 103 11 5 chr1 98094216 98094575 -99100857 + Lx LINE L1 5587 5982 -1662 1 1333 27 73 0 0 chr1 98094757 98094812 -99100620 + AT_rich Low_complexity Low_complexity 1 55 0 1 1333 4399 123 3 0 chr1 98094851 98095492 -99099940 + Lx LINE L1 6008 6650 -4 1 1333 21 36 0 0 chr1 98097067 98097095 -99098337 + AT_rich Low_complexity Low_complexity 1 28 0 1 1333 1883 201 81 5 chr1 98097146 98097530 -99097902 - MTC LTR MaLR 0 421 9 1 1333 227 175 46 31 chr1 98098481 98098546 -99096886 - ORR1D2 LTR MaLR -4 366 301 1 1333 5175 202 89 5 chr1 98098779 98099826 -99095606 + L1_Mur2 LINE L1 918 2053 -3824 1 1333 342 0 0 0 chr1 98099826 98099864 -99095568 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1333 5175 204 31 6 chr1 98099864 98100246 -99095186 + L1_Mur2 LINE L1 2054 2445 -3432 1 1333 27 0 0 0 chr1 98100257 98100284 -99095148 + AT_rich Low_complexity Low_complexity 1 27 0 1 1333 23 0 0 0 chr1 98100626 98100649 -99094783 + AT_rich Low_complexity Low_complexity 1 23 0 1 1333 3100 195 26 21 chr1 98100673 98101375 -99094057 + L1_Mur2 LINE L1 2470 3174 -2703 1 1333 315 0 0 0 chr1 98101395 98101430 -99094002 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1333 32548 77 1 6 chr1 98101447 98106524 -99088908 + L1Md_F2 LINE L1 563 5588 -298 1 1333 7615 67 3 1 chr1 98106525 98107507 -99087925 + L1Md_F2 LINE L1 5590 6573 -12 1 1333 1087 198 4 27 chr1 98107632 98107892 -99087540 + L1_Mur2 LINE L1 3177 3430 -2447 1 1333 353 346 57 25 chr1 98107907 98108064 -99087368 - ORR1D2 LTR MaLR -205 165 4 1 1333 562 281 58 10 chr1 98108074 98108282 -99087150 - RLTR45 LTR ERVK 0 482 265 1 1333 501 62 0 0 chr1 98108614 98108679 -99086753 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1333 2796 97 21 16 chr1 98108705 98109134 -99086298 + L1_Mus3 LINE L1 6202 6632 -6 1 1333 421 307 142 6 chr1 98110185 98110559 -99084873 - L1M3 LINE L1 -1921 4222 3770 1 1333 583 270 7 33 chr1 98112514 98112667 -99082765 + Lx7 LINE L1 6571 6719 -977 1 1333 2757 189 28 8 chr1 98112667 98113173 -99082259 + RMER20A LTR ERVK 1 516 0 1 1333 317 253 0 0 chr1 98113173 98113248 -99082184 + Lx7 LINE L1 6714 6788 -908 1 1333 268 125 0 0 chr1 98113248 98113288 -99082144 - 4.5SRNA scRNA scRNA -53 41 2 1 1333 1617 262 46 27 chr1 98113289 98113728 -99081704 + Lx7 LINE L1 6778 7224 -472 1 1333 308 122 0 0 chr1 98113735 98113784 -99081648 - Lx2B LINE L1 -1325 5675 5627 1 1333 480 101 62 12 chr1 98113791 98113871 -99081561 + Lx3_Mus LINE L1 5814 5897 -1112 1 1333 2760 68 143 19 chr1 98113876 98114049 -99081383 - MT2C_Mm LTR ERVL -4 471 286 1 1333 563 40 14 0 chr1 98114049 98114123 -99081309 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1333 2760 68 143 19 chr1 98114123 98114368 -99081064 - MT2C_Mm LTR ERVL -190 285 2 1 1333 1038 201 13 21 chr1 98114368 98114607 -99080825 + Lx4B LINE L1 5894 6130 -928 1 1333 406 134 15 0 chr1 98114603 98114670 -99080762 + Lx4B LINE L1 6598 6665 -393 1 1333 3281 69 2 9 chr1 98114671 98115111 -99080321 + L1Md_F2 LINE L1 6146 6582 0 1 1333 270 0 0 0 chr1 98115331 98115361 -99080071 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1333 477 0 0 0 chr1 98115361 98115413 -99080019 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1333 297 51 0 0 chr1 98115575 98115614 -99079818 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1333 3997 219 49 44 chr1 98115937 98117049 -99078383 - Lx2B LINE L1 -713 5164 4048 1 1333 288 0 0 0 chr1 98117144 98117176 -99078256 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1333 453 19 0 0 chr1 98117176 98117229 -99078203 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1333 261 0 0 0 chr1 98118608 98118637 -99076795 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1333 1732 252 5 22 chr1 98118638 98119047 -99076385 - MTC LTR MaLR -19 402 1 1 1333 1092 250 249 32 chr1 98119047 98119136 -99076296 - MTC-int LTR MaLR 0 1098 985 1 1333 2771 57 31 0 chr1 98119136 98119539 -99075893 + L1_Mus1 LINE L1 6195 6567 0 1 1333 1092 250 249 32 chr1 98119539 98120041 -99075391 - MTC-int LTR MaLR -114 984 378 1 1333 5212 132 28 62 chr1 98120075 98120464 -99074968 - Lx3A LINE L1 -48 6933 6584 1 1333 5415 39 0 0 chr1 98120464 98121110 -99074322 - L1Md_T LINE L1 0 6582 5937 1 1333 5212 132 28 62 chr1 98121110 98121683 -99073749 - Lx3A LINE L1 -398 6583 6004 1 1333 4303 89 4 107 chr1 98121688 98122457 -99072975 - L1_Mur1 LINE L1 -290 5596 4907 1 1333 1890 211 18 51 chr1 98122460 98122925 -99072507 - MTC-int LTR MaLR -866 392 3 1 1333 1030 90 0 0 chr1 98122957 98123091 -99072341 + B1_Mm SINE Alu 1 134 -13 1 1333 1001 134 12 0 chr1 98123091 98123262 -99072170 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 1 1333 853 355 61 43 chr1 98123302 98123858 -99071574 + Lx8 LINE L1 6471 7036 -437 1 1333 249 222 95 0 chr1 98125881 98125944 -99069488 + L1MC1 LINE L1 6209 6277 -56 1 1333 3208 101 24 2 chr1 98126919 98127386 -99068046 - L1_Mus3 LINE L1 -5 6633 6157 1 1333 366 23 0 0 chr1 98127426 98127469 -99067963 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1333 477 47 0 0 chr1 98127552 98127616 -99067816 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1333 249 33 0 0 chr1 98127616 98127645 -99067787 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1333 21 0 0 0 chr1 98127714 98127735 -99067697 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 21 36 0 0 chr1 98127777 98127805 -99067627 + AT_rich Low_complexity Low_complexity 1 28 0 1 1333 181 53 79 0 chr1 98128162 98128200 -99067232 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1333 441 54 0 0 chr1 98128253 98128309 -99067123 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1333 554 320 50 46 chr1 98128755 98128780 -99066652 - RMER20B LTR ERVK -158 358 336 1 1333 1251 30 24 0 chr1 98128780 98128944 -99066488 + L1Md_F2 LINE L1 6412 6579 -3 1 1333 899 234 212 2 chr1 98128944 98129224 -99066208 - RMER20B LTR ERVK -181 335 1 1 1333 328 313 22 14 chr1 98129328 98129547 -99065885 - L1M5 LINE L1 -355 5809 5589 1 1333 22 0 0 0 chr1 98129802 98129824 -99065608 + AT_rich Low_complexity Low_complexity 1 22 0 1 1333 262 288 16 31 chr1 98129854 98129983 -99065449 - L1M5 LINE L1 -872 5274 5148 1 1333 23 33 0 0 chr1 98130039 98130069 -99065363 + AT_rich Low_complexity Low_complexity 1 30 0 1 1333 27 29 0 0 chr1 98130359 98130393 -99065039 + AT_rich Low_complexity Low_complexity 1 34 0 1 1333 8323 122 20 14 chr1 98130602 98132033 -99063399 + Lx3A LINE L1 5522 6960 -21 1 1333 253 304 102 96 chr1 98132813 98133126 -99062306 + L1MA9 LINE L1 5906 6220 -92 1 1333 7595 151 58 17 chr1 98133123 98134609 -99060823 - Lx2B LINE L1 -3 6997 5456 1 1333 308 299 26 46 chr1 98134651 98134802 -99060630 + L1MEf LINE L1 1539 1686 -4514 1 1333 3982 249 79 65 chr1 98135427 98136487 -99058945 - Lx6 LINE L1 -177 7283 6221 1 1333 911 26 9 0 chr1 98136487 98136601 -99058831 + (TC)n Simple_repeat Simple_repeat 1 115 0 1 1333 3982 249 79 65 chr1 98136601 98136761 -99058671 - Lx6 LINE L1 -1240 6220 6045 1 1333 35012 48 1 3 chr1 98137393 98142708 -99052724 + L1Md_T LINE L1 192 5589 -297 1 1333 8414 35 0 0 chr1 98142708 98143704 -99051728 + L1Md_T LINE L1 5590 6585 0 1 1333 295 291 83 25 chr1 98143720 98143840 -99051592 - B1_Mur1 SINE Alu -20 129 3 1 1333 1602 271 23 52 chr1 98144200 98144721 -99050711 - RMER19C LTR ERVK 0 611 106 1 1333 250 183 54 40 chr1 98144784 98144858 -99050574 + CT-rich Low_complexity Low_complexity 4 78 0 1 1333 5641 121 0 35 chr1 98145226 98145880 -99049552 - L1_Mm LINE L1 -3142 2741 2118 1 1333 1136 69 0 0 chr1 98145880 98146025 -99049407 + B1_Mus2 SINE Alu 2 146 -1 1 1333 5641 121 0 35 chr1 98146025 98146315 -99049117 - L1_Mm LINE L1 -3766 2117 1830 1 1333 7798 90 10 13 chr1 98146313 98147549 -99047883 + L1_Mus2 LINE L1 4766 5981 -585 1 1333 1128 88 0 0 chr1 98147549 98147696 -99047736 - B1_Mus2 SINE Alu 0 147 1 1 1333 7211 68 11 32 chr1 98147696 98148282 -99047150 + L1_Mus2 LINE L1 5982 6565 -1 1 1333 475 233 180 22 chr1 98149396 98149624 -99045808 + L1_Rod LINE L1 5252 5515 -332 1 1333 183 42 0 0 chr1 98149624 98149648 -99045784 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1333 3980 249 40 45 chr1 98149773 98151062 -99044370 + Lx9 LINE L1 6347 7629 -15 1 1333 211 167 20 20 chr1 98151170 98151219 -99044213 + GA-rich Low_complexity Low_complexity 1 49 0 1 1333 537 310 155 25 chr1 98151234 98151641 -99043791 + L1MD LINE L1 4752 5211 -935 1 1333 4937 169 26 7 chr1 98151900 98152874 -99042558 - Lx2B LINE L1 -488 6512 5526 1 1333 603 338 89 3 chr1 98152874 98153212 -99042220 - Lx8 LINE L1 -220 7253 6887 1 1333 272 333 0 0 chr1 98153314 98153401 -99042031 + RSINE1 SINE B4 11 97 -68 1 1333 29 0 0 0 chr1 98153488 98153517 -99041915 + AT_rich Low_complexity Low_complexity 1 29 0 1 1333 441 232 9 104 chr1 98153682 98153856 -99041576 + L1VL1 LINE L1 253 388 -6030 1 1333 8167 37 10 4 chr1 98153865 98154915 -99040517 - L1Md_F2 LINE L1 -1 6581 5526 1 1333 2641 79 8 0 chr1 98154915 98155270 -99040162 + L1Md_F3 LINE L1 6227 6584 0 1 1333 4548 86 5 17 chr1 98155270 98155906 -99039526 + L1_Mus1 LINE L1 5940 6567 0 1 1333 1880 181 12 12 chr1 98155918 98156254 -99039178 + Lx2B LINE L1 6661 6996 -4 1 1333 434 240 41 29 chr1 98157631 98157803 -99037629 - Lx9 LINE L1 -7 7637 7464 1 1333 354 143 0 0 chr1 98157803 98157866 -99037566 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1333 584 173 19 62 chr1 98157872 98158032 -99037400 - Lx9 LINE L1 -130 7514 7362 1 1333 349 261 55 21 chr1 98158117 98158262 -99037170 - L1MA10 LINE L1 -14 6320 6171 1 1333 381 212 59 42 chr1 98159087 98159205 -99036227 - L1MA6 LINE L1 -160 6140 6021 1 1333 35 41 0 0 chr1 98159231 98159280 -99036152 + AT_rich Low_complexity Low_complexity 1 49 0 1 1333 279 79 0 0 chr1 98159353 98159391 -99036041 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1333 354 282 71 0 chr1 98159457 98159542 -99035890 - B3A SINE B2 -107 91 1 1 1333 1664 214 71 75 chr1 98160006 98160512 -99034920 - RLTR11A LTR ERVK -3 525 22 1 1333 21 36 0 0 chr1 98160652 98160680 -99034752 + AT_rich Low_complexity Low_complexity 1 28 0 1 1333 1111 274 110 51 chr1 98160781 98161327 -99034105 - RLTR20A2 LTR ERVK 0 578 1 1 1333 28 48 0 0 chr1 98161331 98161373 -99034059 + AT_rich Low_complexity Low_complexity 1 42 0 1 1333 288 0 0 0 chr1 98161531 98161563 -99033869 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1 1333 455 342 155 8 chr1 98161599 98161838 -99033594 - Lx9 LINE L1 -1024 6620 6347 1 1333 198 0 0 0 chr1 98161857 98161879 -99033553 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1333 918 197 49 5 chr1 98161924 98162108 -99033324 - Lx4B LINE L1 -5 7053 6862 2 1333 839 275 51 15 chr1 98162153 98162596 -99032836 - Lx9 LINE L1 -1356 6117 5629 1 1333 21 0 0 0 chr1 98162948 98162969 -99032463 + AT_rich Low_complexity Low_complexity 1 21 0 2 1333 369 0 0 0 chr1 98163430 98163471 -99031961 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1333 399 41 0 0 chr1 98163473 98163522 -99031910 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1333 22 0 0 0 chr1 98163728 98163750 -99031682 + AT_rich Low_complexity Low_complexity 1 22 0 2 1333 1889 71 209 0 chr1 98163750 98164046 -99031386 + L1_Mus3 LINE L1 6274 6631 -7 2 1333 1342 106 0 10 chr1 98164375 98164584 -99030848 + L1_Mus4 LINE L1 6426 6632 -4 2 1333 24 32 0 0 chr1 98165066 98165097 -99030335 + AT_rich Low_complexity Low_complexity 1 31 0 2 1333 3204 217 165 10 chr1 98165174 98166076 -99029356 + Lx9 LINE L1 6438 7479 -165 2 1333 396 0 0 0 chr1 98166435 98166479 -99028953 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1333 1069 90 7 0 chr1 98166751 98166896 -99028536 + B1_Mus1 SINE Alu 2 147 -1 2 1333 338 121 15 0 chr1 98166902 98166968 -99028464 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 2 1333 25 0 0 0 chr1 98168469 98168494 -99026938 + AT_rich Low_complexity Low_complexity 1 25 0 2 1333 2777 224 80 11 chr1 98168752 98169538 -99025894 + Lx9 LINE L1 6804 7643 -1 2 1333 722 273 55 58 chr1 98169711 98170038 -99025394 - RLTR15 LTR ERVK -33 326 1 2 1333 618 272 0 0 chr1 98170320 98170456 -99024976 - B1_Mur1 SINE Alu -12 137 2 2 1334 486 0 0 0 chr1 98173699 98173753 -99021679 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1334 1950 44 0 16 chr1 98173933 98174211 -99021221 + L1Md_A LINE L1 6322 6582 0 2 1334 1950 44 0 16 chr1 98174211 98174222 -99021210 + L1Md_A LINE L1 6562 6572 -10 2 1334 22 35 0 0 chr1 98175184 98175213 -99020219 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 1193 213 52 16 chr1 98175315 98175625 -99019807 - L1_Mur3 LINE L1 -598 5282 4962 2 1334 540 0 0 0 chr1 98175629 98175689 -99019743 + (GGAGA)n Simple_repeat Simple_repeat 1 60 0 2 1334 1310 61 0 11 chr1 98175692 98175874 -99019558 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1334 446 336 0 8 chr1 98175874 98176006 -99019426 + GA-rich Low_complexity Low_complexity 1 131 0 2 1334 401 323 0 0 chr1 98176154 98176253 -99019179 + ID_B1 SINE B4 122 220 -4 2 1334 4739 97 25 3 chr1 98178134 98178839 -99016593 - L1_Mus3 LINE L1 0 6638 5918 2 1334 2336 87 41 4 chr1 98178839 98179206 -99016226 + L1_Mus3 LINE L1 5615 5985 -1073 2 1334 426 20 0 0 chr1 98179275 98179326 -99016106 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1334 619 299 7 0 chr1 98180065 98180212 -99015220 - B1_Mur3 SINE Alu 0 149 2 2 1334 25 31 0 0 chr1 98180231 98180263 -99015169 + AT_rich Low_complexity Low_complexity 1 32 0 2 1334 232 174 22 0 chr1 98181848 98181894 -99013538 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1334 2866 157 47 8 chr1 98182469 98183002 -99012430 - L1_Mur2 LINE L1 -729 5148 4595 2 1334 7065 88 4 16 chr1 98183002 98184355 -99011077 + L1_Mus2 LINE L1 5229 6565 -1 2 1334 2511 227 40 40 chr1 98184355 98185021 -99010411 + RLTR40 LTR ERVK 145 810 -7 2 1334 552 229 32 16 chr1 98185660 98185784 -99009648 - B1_Mur4 SINE Alu -1 149 24 2 1334 2329 101 3 0 chr1 98187282 98187608 -99007824 + ORR1A2 LTR MaLR 1 327 0 2 1334 228 35 0 0 chr1 98189151 98189180 -99006252 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1334 1375 282 16 24 chr1 98189864 98190235 -99005197 + ORR1D1 LTR MaLR 5 372 -2 2 1334 21 36 0 0 chr1 98190708 98190736 -99004696 + AT_rich Low_complexity Low_complexity 1 28 0 2 1334 567 78 0 0 chr1 98190741 98190818 -99004614 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1334 3301 283 83 47 chr1 98190903 98192386 -99003046 + Lx9 LINE L1 5555 7093 -551 2 1334 969 254 16 106 chr1 98192402 98192771 -99002661 - Lx9 LINE L1 -365 7279 6944 2 1334 588 295 12 0 chr1 98192770 98192943 -99002489 + Lx9 LINE L1 6736 6910 -734 2 1334 362 130 58 0 chr1 98193153 98193222 -99002210 - Lx9 LINE L1 -551 7093 7021 2 1334 22 35 0 0 chr1 98193505 98193534 -99001898 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 247 252 165 16 chr1 98194052 98194173 -99001259 - L1MC3 LINE L1 -123 7662 7524 2 1334 22 35 0 0 chr1 98194744 98194773 -99000659 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 586 356 5 5 chr1 98194898 98195087 -99000345 + ID_B1 SINE B4 2 190 -34 2 1334 605 14 14 0 chr1 98195313 98195387 -99000045 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 1334 297 284 70 65 chr1 98195395 98195610 -98999822 - L1MC3 LINE L1 -1393 6392 6177 2 1334 868 323 81 89 chr1 98195651 98196243 -98999189 - RLTR18 LTR ERVK -25 591 5 2 1334 1646 214 83 30 chr1 98196573 98197040 -98998392 - RMER6C LTR ERVK -198 492 1 2 1334 265 350 39 31 chr1 98197487 98197614 -98997818 - ID_B1 SINE B4 -16 208 81 2 1334 3504 69 16 10 chr1 98199026 98199512 -98995920 + L1Md_F2 LINE L1 6092 6580 -2 2 1334 518 248 49 8 chr1 98199914 98200036 -98995396 - ETnERV2-int LTR ERVK -210 7196 7070 2 1334 1002 242 137 126 chr1 98200103 98200203 -98995229 - MT2A LTR ERVL -2 531 457 2 1334 284 0 28 0 chr1 98200203 98200239 -98995193 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1334 1002 242 137 126 chr1 98200239 98200663 -98994769 - MT2A LTR ERVL -77 456 1 2 1334 1088 299 91 6 chr1 98201841 98202161 -98993271 - Lx8 LINE L1 -159 7314 6968 2 1334 374 353 25 8 chr1 98202171 98202291 -98993141 + RSINE1 SINE B4 11 132 -33 2 1334 270 56 0 0 chr1 98202306 98202342 -98993090 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1334 360 0 0 0 chr1 98202342 98202381 -98993051 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1334 536 246 42 0 chr1 98202381 98202499 -98992933 - RMER12B LTR ERVK -1 1403 1281 2 1334 369 0 0 0 chr1 98202507 98202548 -98992884 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1334 3623 220 75 70 chr1 98202574 98202698 -98992734 - RLTR21 LTR ERVK -515 1057 951 2 1334 193 29 59 0 chr1 98202698 98202732 -98992700 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 1334 3623 220 75 70 chr1 98202732 98203658 -98991774 - RLTR21 LTR ERVK -622 950 1 2 1334 241 253 25 0 chr1 98203659 98203738 -98991694 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 2 1334 986 294 114 11 chr1 98203817 98204282 -98991150 + Lx9 LINE L1 6726 7286 -358 2 1334 432 0 0 0 chr1 98204284 98204332 -98991100 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1334 216 111 0 0 chr1 98204338 98204374 -98991058 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1334 36 0 0 0 chr1 98204382 98204418 -98991014 + AT_rich Low_complexity Low_complexity 1 36 0 2 1334 324 224 0 0 chr1 98205630 98205697 -98989735 - Lx7 LINE L1 -675 7021 6955 2 1334 4762 197 34 92 chr1 98205692 98207151 -98988281 - L1_Mur3 LINE L1 -1202 4678 3305 2 1334 562 175 79 0 chr1 98207152 98207266 -98988166 + L1_Mur2 LINE L1 178 300 -6412 2 1334 667 214 23 8 chr1 98207258 98207390 -98988042 - L1_Mur2 LINE L1 -6179 533 400 2 1334 4836 162 38 14 chr1 98207392 98208270 -98987162 + Lx4A LINE L1 6158 7056 -2 2 1334 5053 187 99 16 chr1 98208294 98209480 -98985952 - L1_Mur3 LINE L1 -2555 3325 2040 2 1334 378 0 0 0 chr1 98209480 98209522 -98985910 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1334 5053 187 99 16 chr1 98209522 98209603 -98985829 - L1_Mur3 LINE L1 -3841 2039 1954 2 1334 5783 200 56 27 chr1 98209626 98211137 -98984295 - Lx5 LINE L1 -10 7040 5479 2 1334 230 165 38 12 chr1 98211462 98211542 -98983890 + CT-rich Low_complexity Low_complexity 25 106 0 2 1334 1270 178 56 4 chr1 98211649 98211880 -98983552 - ORR1B1 LTR MaLR 0 394 152 2 1334 401 224 61 10 chr1 98212054 98212153 -98983279 + LSU-rRNA_Hsa rRNA rRNA 1629 1732 -3303 2 1334 266 208 0 27 chr1 98212934 98213008 -98982424 + CT-rich Low_complexity Low_complexity 3 74 0 2 1334 322 310 0 0 chr1 98213218 98213305 -98982127 - ID_B1 SINE B4 -2 222 136 2 1334 996 92 0 0 chr1 98213479 98213610 -98981822 + B1_Mus1 SINE Alu 5 135 -13 2 1334 189 0 0 0 chr1 98213613 98213634 -98981798 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1334 219 234 0 0 chr1 98215466 98215530 -98979902 + A-rich Low_complexity Low_complexity 1 64 0 2 1334 2917 308 72 22 chr1 98215541 98215849 -98979583 + Lx8 LINE L1 6085 6411 -1062 2 1334 2430 123 0 5 chr1 98215849 98216234 -98979198 - L1_Mus4 LINE L1 -1 6635 6253 2 1334 2917 308 72 22 chr1 98216234 98217082 -98978350 + Lx8 LINE L1 6412 7299 -174 2 1334 192 77 0 0 chr1 98217126 98217152 -98978280 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 1334 405 0 0 0 chr1 98217229 98217274 -98978158 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1334 283 274 35 0 chr1 98217608 98217721 -98977711 - Lx9 LINE L1 -1 7643 7527 2 1334 296 293 56 16 chr1 98217731 98217856 -98977576 - BGLII_B LTR ERVK 0 553 424 2 1334 1618 218 47 36 chr1 98217932 98218447 -98976985 - BGLII_B LTR ERVK 0 441 16 2 1334 306 0 0 0 chr1 98218462 98218496 -98976936 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1334 1065 242 90 3 chr1 98218500 98218811 -98976621 - Lx9 LINE L1 -191 7453 7116 2 1334 1992 268 44 20 chr1 98218728 98219315 -98976117 + Lx9 LINE L1 6362 6962 -682 2 1334 198 136 0 0 chr1 98220466 98220510 -98974922 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1334 404 203 0 0 chr1 98220582 98220651 -98974781 + B3 SINE B2 5 73 -143 2 1334 417 39 0 0 chr1 98220722 98220773 -98974659 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1334 243 0 0 0 chr1 98220773 98220799 -98974633 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1334 369 389 0 0 chr1 98220799 98220938 -98974494 + A-rich Low_complexity Low_complexity 1 139 0 2 1334 1465 87 0 0 chr1 98221265 98221460 -98973972 + L1_Mus3 LINE L1 6275 6469 -169 2 1334 21 0 0 0 chr1 98222350 98222371 -98973061 + AT_rich Low_complexity Low_complexity 1 21 0 2 1334 405 0 0 0 chr1 98222488 98222533 -98972899 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1334 6702 111 21 2 chr1 98223407 98224697 -98970735 - L1_Mus3 LINE L1 -7 6631 5309 2 1334 38171 51 2 14 chr1 98224692 98231021 -98964411 - L1Md_A LINE L1 0 6582 337 2 1334 15140 119 15 15 chr1 98231019 98233520 -98961912 - L1_Mus3 LINE L1 -560 5323 2824 2 1334 1096 122 65 20 chr1 98233520 98233721 -98961711 - RLTR13C1 LTR ERVK 0 983 774 2 1334 647 241 25 20 chr1 98233731 98233930 -98961502 - L1_Mus3 LINE L1 -5749 867 668 2 1334 24 32 0 0 chr1 98234156 98234187 -98961245 + AT_rich Low_complexity Low_complexity 1 31 0 3 1334 2441 165 24 19 chr1 98235276 98235740 -98959692 + RMER4A LTR ERVK 1 466 0 3 1334 351 0 0 0 chr1 98235950 98235989 -98959443 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1334 531 225 0 0 chr1 98235989 98236127 -98959305 + (TA)n Simple_repeat Simple_repeat 1 138 0 3 1334 37 23 0 0 chr1 98236337 98236381 -98959051 + AT_rich Low_complexity Low_complexity 1 44 0 3 1334 26 30 0 0 chr1 98236780 98236813 -98958619 + AT_rich Low_complexity Low_complexity 1 33 0 3 1334 900 347 19 135 chr1 98238341 98238758 -98956674 - Lx8 LINE L1 -203 7270 6940 3 1334 279 0 0 0 chr1 98238758 98238789 -98956643 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1334 900 347 19 135 chr1 98238789 98239178 -98956254 - Lx8 LINE L1 -534 6939 6558 3 1334 361 223 77 10 chr1 98239327 98239431 -98956001 + BC1_Mm scRNA scRNA 1 111 -41 3 1334 603 74 0 0 chr1 98239773 98239854 -98955578 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 1334 25 0 0 0 chr1 98240199 98240224 -98955208 + AT_rich Low_complexity Low_complexity 1 25 0 3 1334 22 35 0 0 chr1 98241219 98241248 -98954184 + AT_rich Low_complexity Low_complexity 1 29 0 3 1334 1561 107 0 4 chr1 98241357 98241592 -98953840 - L1Md_F2 LINE L1 -1 6581 6348 3 1334 1480 139 8 4 chr1 98241782 98242027 -98953405 - Lx LINE L1 -10 6644 6399 3 1334 922 131 0 0 chr1 98242027 98242164 -98953268 + Lx LINE L1 6201 6337 -317 3 1334 25 83 0 0 chr1 98242312 98242372 -98953060 + AT_rich Low_complexity Low_complexity 1 60 0 3 1334 28 0 0 0 chr1 98242774 98242802 -98952630 + AT_rich Low_complexity Low_complexity 1 28 0 3 1334 234 0 0 0 chr1 98243639 98243665 -98951767 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1334 7576 187 92 24 chr1 98243794 98244464 -98950968 - RLTR22_Mur LTR ERVK 0 1848 1154 3 1334 2021 39 16 0 chr1 98244464 98244719 -98950713 - L1Md_F3 LINE L1 -11 6573 6315 3 1334 7576 187 92 24 chr1 98244719 98245777 -98949655 - RLTR22_Mur LTR ERVK -695 1153 1 3 1334 261 333 19 10 chr1 98246538 98246641 -98948791 + Lx8 LINE L1 6517 6620 -853 3 1334 4813 109 0 1 chr1 98246643 98247326 -98948106 - L1_Mm LINE L1 -30 5853 5171 3 1334 2897 99 9 12 chr1 98247326 98247745 -98947687 + L1_Mus2 LINE L1 6148 6565 -1 3 1334 468 0 0 0 chr1 98247800 98247852 -98947580 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1334 698 304 103 44 chr1 98247857 98248198 -98947234 + Lx7 LINE L1 6614 6974 -722 3 1334 239 325 151 32 chr1 98248197 98248448 -98946984 + Lx8 LINE L1 7189 7469 -4 3 1334 248 360 114 0 chr1 98248862 98248976 -98946456 + MER20 DNA MER1_type 20 146 -73 3 1334 786 279 199 15 chr1 98249006 98249348 -98946084 + MTD LTR MaLR 1 405 -14 3 1334 197 139 23 0 chr1 98250009 98250052 -98945380 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1334 213 94 0 0 chr1 98250071 98250103 -98945329 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1334 221 222 0 16 chr1 98250619 98250683 -98944749 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1334 3494 122 14 22 chr1 98251361 98251914 -98943518 - Lx LINE L1 -10 6644 6096 3 1334 378 0 0 0 chr1 98252107 98252149 -98943283 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1334 1016 237 289 0 chr1 98252478 98252790 -98942642 - Lx6 LINE L1 -15 7445 7044 3 1334 645 72 0 9 chr1 98252893 98253005 -98942427 - L1Md_F2 LINE L1 -1 6581 6471 3 1334 5273 146 68 25 chr1 98253083 98254079 -98941353 + Lx3B LINE L1 5930 6968 -5 3 1334 180 0 0 0 chr1 98254089 98254109 -98941323 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 3 1334 1013 116 0 0 chr1 98254246 98254392 -98941040 + B1_Mus1 SINE Alu 2 147 -1 3 1334 2036 47 8 0 chr1 98255112 98255369 -98940063 + L1Md_A LINE L1 6324 6582 0 3 1334 21 0 0 0 chr1 98255910 98255931 -98939501 + AT_rich Low_complexity Low_complexity 1 21 0 3 1334 428 0 0 19 chr1 98255962 98256015 -98939417 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1334 225 0 0 0 chr1 98256866 98256891 -98938541 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1334 669 25 0 0 chr1 98260266 98260345 -98935087 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1334 306 0 0 0 chr1 98260345 98260378 -98935054 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1334 231 234 0 0 chr1 98260726 98260773 -98934659 + MER20 DNA MER1_type 32 78 -141 3 1334 525 271 58 70 chr1 98261746 98261917 -98933515 - B3 SINE B2 -5 211 43 3 1334 3172 33 17 17 chr1 98262544 98262950 -98932482 + L1Md_T LINE L1 6177 6582 0 3 1334 501 17 0 0 chr1 98263664 98263722 -98931710 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1334 342 0 0 0 chr1 98263722 98263759 -98931673 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1334 226 234 0 0 chr1 98263765 98263812 -98931620 + T-rich Low_complexity Low_complexity 4 50 0 3 1334 25 83 0 0 chr1 98263977 98264037 -98931395 + AT_rich Low_complexity Low_complexity 1 60 0 3 1334 600 84 0 0 chr1 98264268 98264351 -98931081 + (GGA)n Simple_repeat Simple_repeat 2 84 0 3 1334 242 417 73 32 chr1 98266109 98266357 -98929075 - MLT1E1 LTR MaLR -49 631 374 3 1334 341 317 32 32 chr1 98266662 98266786 -98928646 + L1MD1 LINE L1 5916 6039 -203 3 1334 747 318 137 9 chr1 98266864 98267200 -98928232 + MTEa LTR MaLR 1 379 0 3 1334 477 151 0 0 chr1 98267326 98267445 -98927987 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 1334 210 37 0 0 chr1 98267448 98267475 -98927957 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1334 1077 73 0 7 chr1 98267475 98267613 -98927819 - B1_Mm SINE Alu -9 138 2 3 1334 367 306 41 48 chr1 98268062 98268224 -98927208 + ORR1D2 LTR MaLR 191 339 -35 3 1334 640 297 20 48 chr1 98268265 98268513 -98926919 - Lx6 LINE L1 -27 7433 7193 3 1334 297 0 0 0 chr1 98268692 98268725 -98926707 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1334 19590 125 20 5 chr1 98271114 98273839 -98921593 + L1_Mm LINE L1 2472 5234 -649 3 1334 378 0 0 0 chr1 98273839 98273881 -98921551 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1334 19590 125 20 5 chr1 98273881 98274322 -98921110 + L1_Mm LINE L1 5235 5684 -199 3 1334 17694 40 9 5 chr1 98274322 98277222 -98918210 - L1Md_F2 LINE L1 0 6582 3758 3 1334 6304 99 3 14 chr1 98277221 98278125 -98917307 + L1_Mus2 LINE L1 5672 6565 -1 3 1334 405 105 0 8 chr1 98278201 98278266 -98917166 - MTB_Mm LTR MaLR -355 66 6 3 1334 262 315 121 15 chr1 98278269 98278401 -98917031 - ORR1D-int LTR MaLR -1162 208 62 3 1334 237 268 104 32 chr1 98278516 98278670 -98916762 - L1_Mur3 LINE L1 -951 4929 4765 3 1334 350 245 200 15 chr1 98278673 98278868 -98916564 + L1MA4 LINE L1 5711 5941 -359 3 1334 222 143 0 0 chr1 98279242 98279291 -98916141 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1334 582 86 0 0 chr1 98279347 98279428 -98916004 + (T)n Simple_repeat Simple_repeat 1 81 0 3 1334 1106 88 0 0 chr1 98279448 98279595 -98915837 - B1_Mus1 SINE Alu 0 148 2 3 1334 483 339 18 12 chr1 98280294 98280461 -98914971 + MER2 DNA MER2_type 178 345 0 3 1334 1110 311 140 48 chr1 98281499 98282220 -98913212 + Lx7 LINE L1 6522 7308 -388 3 1334 594 0 0 0 chr1 98282224 98282290 -98913142 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1334 467 45 15 0 chr1 98282290 98282355 -98913077 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1334 635 75 11 0 chr1 98282786 98282880 -98912552 + (TCC)n Simple_repeat Simple_repeat 2 96 0 3 1334 1305 264 122 24 chr1 98283314 98283775 -98911657 + Lx5 LINE L1 6576 7051 -7 3 1334 200 133 0 43 chr1 98284831 98284878 -98910554 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 3 1334 507 107 0 0 chr1 98284904 98284979 -98910453 + (TCTG)n Simple_repeat Simple_repeat 1 75 0 3 1334 2108 122 12 26 chr1 98285614 98285959 -98909473 + Lx2 LINE L1 6657 6996 -1 3 1334 23 0 0 0 chr1 98285971 98285994 -98909438 + AT_rich Low_complexity Low_complexity 1 23 0 3 1334 6735 166 61 12 chr1 98286987 98288430 -98907002 + Lx3C LINE L1 5471 6972 -4 3 1334 1008 146 18 18 chr1 98288446 98288614 -98906818 + ORR1B1 LTR MaLR 219 386 -8 3 1334 270 219 11 68 chr1 98288831 98288919 -98906513 - L1_Rod LINE L1 -3526 2321 2239 3 1334 4784 78 0 9 chr1 98288923 98289568 -98905864 - L1Md_F2 LINE L1 -3 6579 5941 3 1334 2778 51 0 0 chr1 98289568 98289918 -98905514 + L1_Mus2 LINE L1 5693 6042 -524 3 1334 2363 251 58 56 chr1 98289923 98290472 -98904960 - L1_Rod LINE L1 -3613 2234 1660 3 1334 540 0 0 0 chr1 98290472 98290532 -98904900 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1334 2363 257 58 47 chr1 98290532 98291127 -98904305 - L1_Rod LINE L1 -4188 1659 1080 3 1334 727 336 58 53 chr1 98291621 98292334 -98903098 + Lx9 LINE L1 6781 7471 -2 3 1334 192 216 0 0 chr1 98292989 98293040 -98902392 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1334 28 61 0 0 chr1 98293321 98293370 -98902062 + AT_rich Low_complexity Low_complexity 1 49 0 3 1334 876 185 0 0 chr1 98293954 98294100 -98901332 - B1_Mus1 SINE Alu -1 147 2 3 1334 21 0 0 0 chr1 98295214 98295235 -98900197 + AT_rich Low_complexity Low_complexity 1 21 0 3 1334 207 162 0 0 chr1 98297008 98297045 -98898387 + CT-rich Low_complexity Low_complexity 4 40 0 3 1334 485 314 24 0 chr1 98297051 98297175 -98898257 - B1_Mur1 SINE Alu -21 128 2 3 1334 267 275 25 92 chr1 98297074 98297194 -98898238 - MT2B LTR ERVL -343 258 147 3 1334 264 401 62 8 chr1 98297471 98297599 -98897833 - RSINE1 SINE B4 -26 139 5 3 1334 1405 273 60 0 chr1 98299191 98299572 -98895860 + MTD LTR MaLR 16 419 0 3 1334 188 135 0 26 chr1 98299716 98299754 -98895678 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1334 331 314 193 8 chr1 98300125 98300478 -98894954 - L1M5 LINE L1 -2258 3888 3471 3 1334 31 26 0 0 chr1 98300492 98300530 -98894902 + AT_rich Low_complexity Low_complexity 1 38 0 3 1334 22 35 0 0 chr1 98300561 98300590 -98894842 + AT_rich Low_complexity Low_complexity 1 29 0 3 1334 183 42 0 0 chr1 98300753 98300777 -98894655 + (TATAA)n Simple_repeat Simple_repeat 2 25 0 3 1334 7190 94 35 7 chr1 98300780 98301847 -98893585 - Lx3_Mus LINE L1 -5 7004 5908 4 1334 701 279 124 12 chr1 98301900 98302150 -98893282 - MTC-int LTR MaLR -707 551 274 4 1334 2021 104 12 34 chr1 98302163 98302490 -98892942 - Lx3A LINE L1 -7 6974 6655 4 1334 4989 89 0 3 chr1 98302519 98303227 -98892205 - L1Md_F2 LINE L1 -1586 4297 3592 4 166 9215 84 10 2 chr1 98303223 98304489 -98890943 + L1Md_F2 LINE L1 4309 5585 -298 4 1335 7245 78 4 18 chr1 98304490 98305488 -98889944 + L1Md_F2 LINE L1 5587 6570 -12 4 1335 2245 92 38 6 chr1 98306134 98306451 -98888981 - ORR1A2 LTR MaLR 0 327 1 4 1335 333 0 0 0 chr1 98306532 98306569 -98888863 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1335 225 94 0 0 chr1 98306911 98306943 -98888489 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1335 22 56 0 0 chr1 98307032 98307068 -98888364 + AT_rich Low_complexity Low_complexity 1 36 0 4 1335 329 262 101 47 chr1 98309453 98309601 -98885831 - L1M2 LINE L1 -1284 4859 4704 4 1335 47 73 0 0 chr1 98310163 98310259 -98885173 + AT_rich Low_complexity Low_complexity 1 96 0 4 1335 1169 55 0 7 chr1 98310449 98310596 -98884836 + B1_Mus2 SINE Alu 1 146 -1 4 1335 309 76 45 0 chr1 98310601 98310667 -98884765 + (CAAAAA)n Simple_repeat Simple_repeat 4 72 0 4 1335 30 27 0 0 chr1 98311041 98311078 -98884354 + AT_rich Low_complexity Low_complexity 1 37 0 4 1335 678 276 22 27 chr1 98311456 98311679 -98883753 - L1_Rod LINE L1 -94 5753 5532 4 1335 330 26 0 0 chr1 98311738 98311777 -98883655 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1335 1395 268 92 24 chr1 98311786 98312073 -98883359 - Lx7 LINE L1 -9 7687 7357 4 1335 309 51 0 0 chr1 98312073 98312112 -98883320 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 1335 1395 268 92 24 chr1 98312112 98312150 -98883282 - Lx7 LINE L1 -340 7356 7325 4 1335 372 43 0 0 chr1 98312150 98312196 -98883236 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1335 410 0 20 0 chr1 98312196 98312245 -98883187 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1335 1395 268 92 24 chr1 98312245 98312425 -98883007 - Lx7 LINE L1 -372 7324 7146 4 1335 555 341 58 8 chr1 98312423 98312804 -98882628 - L1_Mur3 LINE L1 -441 5439 5040 4 1335 1799 186 18 57 chr1 98312818 98313212 -98882220 + ORR1C1 LTR MaLR 1 421 0 4 1335 1366 219 101 3 chr1 98313212 98313578 -98881854 - Lx9 LINE L1 -75 7569 7168 4 1335 483 210 0 0 chr1 98314017 98314117 -98881315 - Lx9 LINE L1 -640 7004 6905 4 1335 652 231 14 7 chr1 98314114 98314262 -98881170 + Lx9 LINE L1 6749 6897 -747 4 1335 667 327 4 49 chr1 98314942 98315167 -98880265 - ID_B1 SINE B4 -7 217 3 4 1335 1393 253 72 14 chr1 98315328 98315772 -98879660 - RMER5 LTR ERV1 -26 508 39 4 1335 1815 230 53 24 chr1 98315983 98316438 -98878994 + Lx3C LINE L1 6507 6974 -2 4 1335 22 0 0 0 chr1 98316438 98316460 -98878972 + AT_rich Low_complexity Low_complexity 1 22 0 4 1335 21 0 0 0 chr1 98316486 98316507 -98878925 + AT_rich Low_complexity Low_complexity 1 21 0 4 1335 27 62 0 0 chr1 98316667 98316715 -98878717 + AT_rich Low_complexity Low_complexity 1 48 0 4 1335 309 51 0 0 chr1 98316734 98316773 -98878659 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1335 255 299 15 15 chr1 98316843 98316979 -98878453 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 1335 213 289 144 0 chr1 98317563 98317653 -98877779 + B1F1 SINE Alu 1 103 -46 4 1335 464 118 0 0 chr1 98317953 98318021 -98877411 + RLTR22_Mur LTR ERVK 226 293 -1555 4 1335 350 189 0 95 chr1 98317992 98318097 -98877335 + RLTR22_Mur LTR ERVK 711 805 -1043 4 1335 306 312 126 74 chr1 98318337 98318527 -98876905 + RMER12 LTR ERVK 1110 1309 -13 4 1335 364 291 79 34 chr1 98318540 98318718 -98876714 - Lx8 LINE L1 -13 7460 7275 4 1335 468 132 0 0 chr1 98318772 98318855 -98876577 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1335 457 330 71 50 chr1 98318946 98319185 -98876247 - Lx8 LINE L1 -309 7164 6921 4 1335 557 271 227 5 chr1 98319249 98319643 -98875789 - Lx8 LINE L1 -658 6815 6335 4 1335 365 300 40 0 chr1 98319656 98319756 -98875676 - Lx8 LINE L1 -1179 6294 6191 4 1335 728 301 24 66 chr1 98320100 98320526 -98874906 + L1_Rod LINE L1 5377 5784 -63 4 1335 1049 331 60 29 chr1 98321418 98321980 -98873452 + Lx8 LINE L1 6757 7336 -137 4 1335 719 329 47 7 chr1 98322169 98322448 -98872984 - B4 SINE B4 -2 290 1 4 1335 2696 39 6 3 chr1 98323242 98323577 -98871855 + L1Md_F3 LINE L1 6235 6570 -14 4 1335 2358 113 8 8 chr1 98323880 98324247 -98871185 + L1Md_F2 LINE L1 6216 6582 0 4 1335 5940 102 12 0 chr1 98324247 98325165 -98870267 + MusHAL1 LINE L1 1357 2285 -427 4 1335 2882 77 8 25 chr1 98325898 98326297 -98869135 - L1_Mus1 LINE L1 0 6567 6176 4 1335 654 69 0 10 chr1 98326292 98326395 -98869037 + L1Md_F2 LINE L1 6470 6571 -11 4 1335 1932 183 31 8 chr1 98326485 98326837 -98868595 - ORR1B2 LTR MaLR -7 360 1 4 1335 530 163 11 11 chr1 98326837 98326930 -98868502 - ORR1B2-int LTR MaLR 0 1509 1417 4 1335 1290 198 181 76 chr1 98326938 98327413 -98868019 - RMER6C LTR ERVK -97 593 69 4 1335 5060 207 103 6 chr1 98327415 98328573 -98866859 - ORR1B2-int LTR MaLR -239 1270 1 4 1335 1880 192 5 40 chr1 98328577 98328947 -98866485 - ORR1B2 LTR MaLR -8 359 3 4 1335 773 301 53 5 chr1 98330145 98330352 -98865080 + ORR1D2 LTR MaLR 1 217 -153 4 1335 191 36 36 0 chr1 98330356 98330384 -98865048 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1335 1327 101 16 0 chr1 98330397 98330586 -98864846 - B2_Mm2 SINE B2 0 195 4 4 1335 4232 91 12 7 chr1 98330588 98331189 -98864243 - L1_Mus4 LINE L1 -15 6621 6018 4 1335 5078 100 24 35 chr1 98331189 98331849 -98863583 + RLTR13C2 LTR ERVK 1 660 -148 4 1335 3022 63 28 0 chr1 98331849 98332246 -98863186 + L1Md_F3 LINE L1 6163 6570 -14 4 1335 5078 114 34 41 chr1 98332246 98332405 -98863027 + RLTR13C2 LTR ERVK 661 782 -26 4 1335 399 122 0 32 chr1 98332407 98332478 -98862954 + Lx LINE L1 5937 6005 -561 4 1335 1578 236 3 36 chr1 98332547 98332907 -98862525 - ORR1C1 LTR MaLR -30 348 1 4 1335 244 217 0 16 chr1 98332907 98332968 -98862464 + ORR1D2 LTR MaLR 311 370 0 4 1335 570 29 0 0 chr1 98333909 98333977 -98861455 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 1335 189 254 0 0 chr1 98334481 98334552 -98860880 + (CTATA)n Simple_repeat Simple_repeat 3 73 0 4 1335 36094 34 4 8 chr1 98335332 98340523 -98854909 + L1Md_T LINE L1 422 5586 -297 4 1335 8024 36 21 0 chr1 98340524 98341497 -98853935 + L1Md_T LINE L1 5588 6580 -2 4 1335 325 281 60 34 chr1 98341545 98341722 -98853710 - ORR1D2 LTR MaLR -158 212 1 4 1335 12248 100 16 22 chr1 98342051 98344964 -98850468 + Lx3A LINE L1 4079 6971 -10 4 1335 899 118 0 7 chr1 98344976 98345121 -98850311 + (GAA)n Simple_repeat Simple_repeat 2 145 0 4 1335 909 319 63 33 chr1 98346550 98346916 -98848516 + MTE2a LTR MaLR 3 379 0 4 1335 952 339 66 11 chr1 98346917 98347296 -98848136 + MTE2a-int LTR MaLR 3 402 -1178 4 1335 552 364 69 31 chr1 98347280 98347598 -98847834 + MTE2a-int LTR MaLR 519 848 -732 4 1335 5058 154 20 26 chr1 98347645 98347799 -98847633 - L1_Mur2 LINE L1 -1599 4278 4124 4 1335 981 26 0 0 chr1 98347799 98347915 -98847517 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 4 1335 5058 154 20 26 chr1 98347915 98348726 -98846706 - L1_Mur2 LINE L1 -1754 4123 3320 4 1335 2103 132 3 3 chr1 98348727 98349053 -98846379 + L1_Mus4 LINE L1 5974 6299 -337 4 1335 3057 72 0 0 chr1 98349048 98349439 -98845993 - L1Md_F2 LINE L1 -238 6344 5954 4 1335 1677 77 4 17 chr1 98349443 98349681 -98845751 + L1Md_F2 LINE L1 6348 6582 0 4 1335 2205 125 40 3 chr1 98349708 98350061 -98845371 + Lx LINE L1 6283 6648 -6 4 1335 587 283 31 25 chr1 98350152 98350348 -98845084 - B3A SINE B2 0 198 2 4 1335 333 310 38 45 chr1 98350432 98350564 -98844868 + B4A SINE B4 26 156 -136 4 1335 7052 116 3 12 chr1 98350576 98351168 -98844264 + L1_Mus2 LINE L1 5194 5756 -127 4 1335 2023 137 10 0 chr1 98351168 98351474 -98843958 - RLTR27 LTR ERVK 0 309 1 4 1335 7052 94 1 15 chr1 98351474 98351749 -98843683 + L1_Mus2 LINE L1 5757 6021 -545 4 1335 3180 37 25 2 chr1 98351749 98352151 -98843281 - IAPLTR2a LTR ERVK 0 411 1 4 1335 7052 94 1 15 chr1 98352151 98352696 -98842736 + L1_Mus2 LINE L1 6022 6565 -1 4 1335 1118 76 0 7 chr1 98354120 98354266 -98841166 + B1_Mus1 SINE Alu 3 147 -1 4 1335 644 334 61 21 chr1 98354805 98355184 -98840248 - LTR52-int LTR ERVL -186 3370 2977 4 1335 2545 163 15 2 chr1 98355310 98355778 -98839654 - Lx4A LINE L1 -787 6271 5798 4 1335 1164 248 70 65 chr1 98355778 98356253 -98839179 + RMER17B LTR ERVK 289 765 -193 4 1335 1764 154 77 3 chr1 98356311 98356611 -98838821 - RMER17B LTR ERVK -636 322 1 4 1335 2570 160 50 0 chr1 98357028 98357483 -98837949 + Lx LINE L1 6173 6650 -4 4 1335 21 0 0 0 chr1 98357490 98357511 -98837921 + AT_rich Low_complexity Low_complexity 1 21 0 4 1335 180 152 0 0 chr1 98357801 98357834 -98837598 + CT-rich Low_complexity Low_complexity 2 34 0 4 1335 31 0 0 0 chr1 98358133 98358164 -98837268 + AT_rich Low_complexity Low_complexity 1 31 0 4 1335 308 343 79 66 chr1 98359141 98359444 -98835988 - LTR40b LTR ERVL -21 441 135 4 1335 735 312 35 0 chr1 98359673 98359875 -98835557 - B3 SINE B2 0 216 8 4 1335 555 316 190 0 chr1 98360968 98361221 -98834211 - Lx8 LINE L1 -830 6643 6343 4 1335 336 24 0 0 chr1 98361561 98361602 -98833830 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1335 302 140 18 0 chr1 98361815 98361872 -98833560 - Lx5 LINE L1 -2 7048 6991 4 1335 244 203 13 26 chr1 98362163 98362239 -98833193 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 4 1335 802 103 143 0 chr1 98362610 98362736 -98832696 - B1_Mus1 SINE Alu -2 146 3 4 1335 222 37 0 0 chr1 98363094 98363121 -98832311 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1335 448 250 26 117 chr1 98363128 98363282 -98832150 - B1_Mus1 SINE Alu -6 142 3 4 1335 49 52 0 0 chr1 98363333 98363410 -98832022 + AT_rich Low_complexity Low_complexity 1 77 0 4 1335 386 354 132 9 chr1 98363897 98364231 -98831201 - L1MB5 LINE L1 0 6174 5800 4 1335 311 219 0 0 chr1 98364239 98364303 -98831129 - B1_Mur4 SINE Alu -86 64 1 4 1335 2308 66 119 11 chr1 98364873 98365225 -98830207 + RLTR10 LTR ERVK 1 390 0 4 1335 204 139 28 0 chr1 98366128 98366164 -98829268 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1335 649 273 42 11 chr1 98366532 98366721 -98828711 + Lx6 LINE L1 7264 7458 -2 4 1335 3698 216 139 8 chr1 98367007 98368050 -98827382 - L1_Mur3 LINE L1 -650 5230 4051 4 1335 565 189 13 26 chr1 98368773 98368925 -98826507 - Lx3A LINE L1 -3 6978 6829 4 1335 192 40 0 0 chr1 98372094 98372119 -98823313 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1335 27598 84 6 2 chr1 98372151 98376694 -98818738 - L1Md_F2 LINE L1 -12 6570 2010 4 1335 4934 70 15 12 chr1 98376701 98377385 -98818047 - L1Md_F2 LINE L1 -2 6580 5895 4 1335 5239 126 27 38 chr1 98377385 98378391 -98817041 - L1Md_F2 LINE L1 -4514 1369 375 4 1335 260 410 0 19 chr1 98378546 98378705 -98816727 - MLT1A LTR MaLR -4 370 215 4 1335 2167 93 0 10 chr1 98379772 98380077 -98815355 - L1_Mus2 LINE L1 -50 5833 5532 5 1335 5228 83 5 33 chr1 98380077 98380525 -98814907 + L1_Mus2 LINE L1 5831 6281 -285 5 1335 3163 45 37 0 chr1 98380525 98380907 -98814525 - MTA_Mm LTR MaLR 0 396 1 5 1335 5228 83 5 33 chr1 98380907 98381215 -98814217 + L1_Mus2 LINE L1 6282 6566 0 5 1335 347 338 29 7 chr1 98381947 98382084 -98813348 + MER63A DNA AcHobo 29 168 -42 5 1335 28 0 0 0 chr1 98382093 98382121 -98813311 + AT_rich Low_complexity Low_complexity 1 28 0 5 1335 1167 296 54 8 chr1 98382244 98382598 -98812834 - MTE2b LTR MaLR -9 370 1 5 1335 743 293 124 15 chr1 98382891 98383531 -98811901 - L1MCb LINE L1 -5457 1294 496 5 1335 253 320 105 65 chr1 98383603 98383754 -98811678 - Lx8 LINE L1 -5 7468 7317 5 1335 3694 28 0 0 chr1 98383754 98384184 -98811248 + L1Md_A LINE L1 6152 6581 -1 5 1335 253 320 105 65 chr1 98384184 98384279 -98811153 - Lx8 LINE L1 -157 7316 7212 5 1335 236 275 43 0 chr1 98384347 98384416 -98811016 - Lx8 LINE L1 -453 7020 6949 5 1335 234 196 0 67 chr1 98384429 98384489 -98810943 + MTD-int LTR MaLR 1200 1255 -3 5 1335 239 171 0 0 chr1 98384492 98384533 -98810899 + MTD LTR MaLR 1 41 -378 5 1335 568 284 135 30 chr1 98385418 98385683 -98809749 + RMER20B LTR ERVK 168 483 -144 5 1335 366 23 0 0 chr1 98386001 98386044 -98809388 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 5 1335 194 91 30 0 chr1 98386044 98386077 -98809355 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 5 1335 23 0 0 0 chr1 98386110 98386133 -98809299 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 613 338 25 17 chr1 98387570 98387811 -98807621 - Lx9 LINE L1 -1017 6627 6385 5 1335 432 0 0 0 chr1 98387853 98387901 -98807531 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1335 252 263 13 26 chr1 98388935 98389013 -98806419 - ID4_ SINE ID -2 81 5 5 1335 37 39 0 0 chr1 98389164 98389215 -98806217 + AT_rich Low_complexity Low_complexity 1 51 0 5 1335 9929 202 51 36 chr1 98389407 98391036 -98804396 + L1_Mur3 LINE L1 3159 4728 -1152 5 1335 279 0 0 0 chr1 98391036 98391067 -98804365 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1335 9929 165 27 209 chr1 98391067 98391825 -98803607 + L1_Mur3 LINE L1 4729 5580 -300 5 1335 8112 45 2 6 chr1 98391825 98392822 -98802610 + L1Md_F2 LINE L1 5588 6580 -2 5 1335 8540 165 27 209 chr1 98392822 98393163 -98802269 + Lx LINE L1 4904 5251 -635 5 1335 333 0 0 0 chr1 98393163 98393200 -98802232 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1335 8540 127 12 76 chr1 98393200 98394062 -98801370 + Lx LINE L1 5252 6148 -506 5 1335 543 156 115 0 chr1 98394065 98394161 -98801271 + L1_Mm LINE L1 5420 5526 -357 5 1335 2575 146 28 28 chr1 98394169 98394628 -98800804 + Lx LINE L1 6196 6654 0 5 1335 425 221 107 0 chr1 98394713 98394835 -98800597 + Lx4B LINE L1 6920 7054 -4 5 1335 1094 70 101 0 chr1 98395927 98396085 -98799347 - Lx3C LINE L1 -1112 5864 5691 5 1335 265 356 33 33 chr1 98396370 98396553 -98798879 - B3A SINE B2 -15 183 1 5 1335 242 250 53 21 chr1 98397454 98397548 -98797884 - Lx4B LINE L1 -5 7053 6957 5 1335 198 0 0 0 chr1 98398000 98398022 -98797410 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1335 518 86 12 0 chr1 98398033 98398114 -98797318 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1335 686 119 0 0 chr1 98398695 98398796 -98796636 + L1Md_F2 LINE L1 6336 6436 -146 5 1335 4751 78 3 11 chr1 98398797 98399445 -98795987 - L1Md_F2 LINE L1 0 6582 5940 5 1335 7474 49 0 1 chr1 98399445 98400436 -98794996 + L1Md_F2 LINE L1 4941 5930 -652 5 1335 921 114 0 0 chr1 98400438 98400578 -98794854 + L1Md_F2 LINE L1 6430 6569 -13 5 1335 1869 92 78 3 chr1 98401170 98401463 -98793969 + L1_Mus3 LINE L1 6319 6633 -5 5 1335 817 242 40 40 chr1 98401643 98401845 -98793587 + B3 SINE B2 13 214 -2 5 1335 26 30 0 0 chr1 98401866 98401899 -98793533 + AT_rich Low_complexity Low_complexity 1 33 0 5 1335 1424 260 133 13 chr1 98402223 98402854 -98792578 - L1_Mur3 LINE L1 -1307 4573 3867 5 1335 1298 344 95 19 chr1 98402855 98403884 -98791548 + Lx8 LINE L1 5804 6930 -543 5 1335 8394 33 0 0 chr1 98403882 98404948 -98790484 - L1Md_T LINE L1 0 6582 5517 5 1335 27 29 0 0 chr1 98405375 98405409 -98790023 + AT_rich Low_complexity Low_complexity 1 34 0 5 1335 25 31 0 0 chr1 98405553 98405585 -98789847 + AT_rich Low_complexity Low_complexity 1 32 0 5 1335 204 224 20 0 chr1 98405729 98405778 -98789654 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1335 886 87 71 0 chr1 98407793 98407919 -98787513 + B1_Mus1 SINE Alu 1 135 -13 5 1335 356 0 0 22 chr1 98407919 98407964 -98787468 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 1335 247 346 43 19 chr1 98408268 98408430 -98787002 - L1MC3 LINE L1 -265 7520 7355 5 1335 483 69 0 0 chr1 98408710 98408782 -98786650 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 5 1335 23 0 0 0 chr1 98409285 98409308 -98786124 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 1697 273 90 52 chr1 98411025 98411188 -98784244 - Lx9 LINE L1 -817 6827 6686 5 1335 1574 207 68 78 chr1 98411188 98411571 -98783861 - ORR1C2 LTR MaLR -3 381 3 5 1335 1697 273 90 52 chr1 98411571 98412150 -98783282 - Lx9 LINE L1 -959 6685 6057 5 1335 2377 254 77 8 chr1 98412158 98412884 -98782548 + Lx9 LINE L1 6836 7611 -33 5 1335 23 0 0 0 chr1 98413041 98413064 -98782368 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 180 250 105 32 chr1 98413180 98413275 -98782157 + L3 LINE CR1 2112 2213 -2276 5 1335 382 394 39 0 chr1 98414224 98414379 -98781053 + B4A SINE B4 1 161 -131 5 1335 987 259 123 53 chr1 98415072 98415390 -98780042 + ORR1D1 LTR MaLR 14 353 -21 5 1335 4437 241 85 64 chr1 98415389 98416720 -98778712 + ORR1D1-int LTR MaLR 12 1370 0 5 1335 1603 249 8 22 chr1 98416723 98417092 -98778340 + ORR1D1 LTR MaLR 4 367 -7 5 1335 1004 299 58 10 chr1 98417208 98417705 -98777727 + L1M2 LINE L1 4579 5099 -1044 5 1335 261 0 0 0 chr1 98418302 98418331 -98777101 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1335 1188 254 4 11 chr1 98419425 98419704 -98775728 + Lx5 LINE L1 6267 6543 -507 5 1335 1296 172 179 0 chr1 98419704 98420000 -98775432 - RLTR15 LTR ERVK -10 349 1 5 1335 1403 250 101 30 chr1 98420000 98420474 -98774958 + Lx5 LINE L1 6543 7050 0 5 1335 27 0 0 0 chr1 98420474 98420501 -98774931 + AT_rich Low_complexity Low_complexity 1 27 0 5 1335 341 104 39 13 chr1 98421959 98422037 -98773395 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1335 252 0 0 0 chr1 98422443 98422471 -98772961 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1335 289 409 47 0 chr1 98422655 98422782 -98772650 + ID_B1 SINE B4 83 215 -9 5 1335 380 314 167 46 chr1 98423112 98423436 -98771996 + Lx9 LINE L1 6777 7139 -505 5 1335 726 274 125 21 chr1 98423451 98423835 -98771597 + Lx9 LINE L1 7206 7629 -15 5 1335 315 245 135 21 chr1 98423865 98424057 -98771375 - L1M2 LINE L1 -692 5608 5395 5 1335 468 339 153 8 chr1 98424475 98424716 -98770716 - RMER15 LTR ERVL -4 571 296 5 1335 276 277 87 19 chr1 98424778 98424881 -98770551 - RMER15 LTR ERVL -447 128 19 5 1335 1224 118 5 0 chr1 98424881 98425067 -98770365 + Lx LINE L1 5900 6086 -568 5 1335 1818 118 76 41 chr1 98425068 98425412 -98770020 + Lx LINE L1 6295 6650 -4 5 1335 640 370 46 19 chr1 98425722 98426089 -98769343 - Tigger7 DNA MER2_type -1912 579 203 5 1335 229 368 41 21 chr1 98426189 98426286 -98769146 - Tigger7 DNA MER2_type -2388 103 5 5 1335 311 337 30 61 chr1 98426508 98426770 -98768662 + L1MD2 LINE L1 6091 6344 -15 5 1335 182 216 0 0 chr1 98427905 98427942 -98767490 - MIR SINE MIR -71 191 155 5 1335 2791 86 4 81 chr1 98428119 98428576 -98766856 + BGLII_Mus LTR ERVK 1 422 0 5 1335 223 257 93 13 chr1 98429059 98429114 -98766318 + B4 SINE B4 1 62 -230 5 1335 2983 67 15 3 chr1 98429114 98429505 -98765927 + MTA_Mm LTR MaLR 1 396 0 5 1335 223 257 93 13 chr1 98429505 98429524 -98765908 + B4 SINE B4 63 81 -211 5 1335 2619 68 3 53 chr1 98429524 98429898 -98765534 + L1_Mus2 LINE L1 6205 6559 -7 5 1335 20222 96 65 7 chr1 98429924 98434450 -98760982 + L1Md_T LINE L1 453 5586 -297 5 166 8295 31 9 0 chr1 98434450 98435435 -98759997 + L1Md_T LINE L1 5587 6580 -2 5 1336 345 326 143 55 chr1 98435470 98435652 -98759780 + B4 SINE B4 87 284 -8 5 1336 195 42 0 0 chr1 98435673 98435697 -98759735 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1336 689 286 0 11 chr1 98436951 98437135 -98758297 - B3A SINE B2 -16 182 1 5 1336 914 237 5 0 chr1 98437796 98437982 -98757450 - Lx5 LINE L1 -428 6622 6436 5 1336 1691 212 89 24 chr1 98437980 98438361 -98757071 + Lx5 LINE L1 6644 7049 -1 5 1336 733 228 116 0 chr1 98439153 98439394 -98756038 + Lx9 LINE L1 7333 7601 -43 5 1336 23 33 0 0 chr1 98439673 98439703 -98755729 + AT_rich Low_complexity Low_complexity 1 30 0 5 1336 451 353 19 38 chr1 98439947 98440106 -98755326 + RSINE1 SINE B4 2 157 -8 5 1336 890 319 74 72 chr1 98440213 98440700 -98754732 - Lx5 LINE L1 -84 6966 6479 5 1336 379 300 50 0 chr1 98440691 98440811 -98754621 - Lx5 LINE L1 -676 6374 6249 5 1336 240 351 6 44 chr1 98440831 98441013 -98754419 + L1MC4a LINE L1 5856 6030 -1755 5 1336 484 141 0 21 chr1 98441073 98441167 -98754265 - L1Md_F2 LINE L1 -21 6561 6470 5 1336 556 204 65 47 chr1 98441167 98441211 -98754221 + ID_B1 SINE B4 52 224 0 5 1336 966 56 16 0 chr1 98441211 98441337 -98754095 + B1_Mus1 SINE Alu 21 148 0 5 1336 313 348 36 0 chr1 98441590 98441728 -98753704 + L1MC4a LINE L1 6383 6525 -1357 5 1336 329 250 63 79 chr1 98441728 98441854 -98753578 + MT2B LTR ERVL 155 278 -323 5 1336 545 222 37 0 chr1 98441748 98441856 -98753576 + B1_Mus2 SINE Alu 11 122 -25 5 1336 228 135 0 0 chr1 98442085 98442122 -98753310 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1336 4763 83 3 0 chr1 98442139 98442777 -98752655 - L1_Mus2 LINE L1 -1 6565 5926 5 1336 6551 106 18 5 chr1 98443544 98444525 -98750907 - Lx3_Mus LINE L1 0 7009 6016 5 1336 28 29 0 0 chr1 98445098 98445133 -98750299 + AT_rich Low_complexity Low_complexity 1 35 0 5 1336 34 42 0 0 chr1 98445353 98445401 -98750031 + AT_rich Low_complexity Low_complexity 1 48 0 5 1336 414 0 0 0 chr1 98445574 98445620 -98749812 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1336 29 28 0 0 chr1 98445733 98445769 -98749663 + AT_rich Low_complexity Low_complexity 1 36 0 5 1336 258 267 0 109 chr1 98447184 98447285 -98748147 + MTEa LTR MaLR 6 95 -279 5 1336 321 325 0 31 chr1 98447359 98447486 -98747946 + MTEa LTR MaLR 253 375 -4 5 1336 183 80 0 0 chr1 98447513 98447538 -98747894 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1336 270 347 27 0 chr1 98447582 98447657 -98747775 + ID4_ SINE ID 7 83 0 5 1336 3209 248 118 58 chr1 98447679 98448895 -98746537 + Lx7 LINE L1 4699 5978 -1718 5 1336 2408 147 63 0 chr1 98448895 98449310 -98746122 - BGLII_B LTR ERVK 0 441 1 5 1336 1080 286 86 25 chr1 98449310 98449709 -98745723 + Lx7 LINE L1 5979 6411 -1285 5 1336 486 0 0 0 chr1 98449915 98449969 -98745463 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 5 1336 818 73 22 7 chr1 98450290 98450427 -98745005 + (TC)n Simple_repeat Simple_repeat 2 140 0 5 1336 369 0 0 0 chr1 98450429 98450470 -98744962 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1336 4342 216 46 52 chr1 98450490 98451584 -98743848 + RMER21A LTR ERV1 3 946 -1 6 1336 2066 287 20 9 chr1 98451611 98452244 -98743188 + Lx7 LINE L1 6743 7382 -314 5 1336 627 269 71 31 chr1 98452302 98452526 -98742906 + RMER5 LTR ERV1 100 332 -202 6 1336 2348 182 41 30 chr1 98452526 98453058 -98742374 + RLTR22_Mur LTR ERVK 4 541 -1307 6 1336 669 224 27 21 chr1 98453031 98453218 -98742214 + RLTR22_Mur LTR ERVK 1620 1807 -41 6 1336 870 207 62 29 chr1 98453238 98453447 -98741985 + RMER5 LTR ERV1 317 532 -2 6 1336 236 67 0 100 chr1 98453519 98453569 -98741863 - Lx8 LINE L1 -28 7445 7401 6 1336 482 254 32 16 chr1 98453789 98453913 -98741519 + MTE2a LTR MaLR 254 379 0 6 1336 1781 163 49 0 chr1 98454416 98454723 -98740709 - ORR1A3 LTR MaLR -4 322 1 6 1336 372 59 0 0 chr1 98454724 98454775 -98740657 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 6 1336 313 240 19 39 chr1 98454822 98454926 -98740506 - L1M2 LINE L1 -1133 5010 4909 6 1336 243 0 0 0 chr1 98454926 98454953 -98740479 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1336 685 240 65 33 chr1 98454977 98455192 -98740240 - MER67C LTR ERV1 -416 295 74 6 1336 288 292 131 30 chr1 98455564 98455762 -98739670 + RMER5 LTR ERV1 27 244 -290 6 1336 792 298 79 26 chr1 98455977 98456511 -98738921 - L1M2 LINE L1 -1215 4928 4367 6 1336 299 106 0 0 chr1 98456597 98456644 -98738788 - URR1B DNA MER1_type 0 225 179 6 1336 306 73 0 0 chr1 98458775 98458816 -98736616 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1336 216 111 0 0 chr1 98459324 98459360 -98736072 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1336 23 0 0 0 chr1 98460612 98460635 -98734797 + AT_rich Low_complexity Low_complexity 1 23 0 6 1336 236 259 21 52 chr1 98461364 98461459 -98733973 + PB1 SINE Alu 26 120 -7 6 1336 190 73 49 0 chr1 98461932 98461973 -98733459 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 6 1336 956 114 0 6 chr1 98462217 98462394 -98733038 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 6 1336 219 131 0 76 chr1 98462395 98462461 -98732971 + GA-rich Low_complexity Low_complexity 3 63 0 6 1336 624 107 0 0 chr1 98462465 98462577 -98732855 + (CAGG)n Simple_repeat Simple_repeat 2 113 0 6 1336 249 261 0 0 chr1 98463688 98463803 -98731629 + CT-rich Low_complexity Low_complexity 2 116 0 6 1336 288 0 0 0 chr1 98463812 98463844 -98731588 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1336 256 300 24 25 chr1 98464347 98464482 -98730950 - L1MC LINE L1 -2063 4083 3950 6 1336 184 149 43 0 chr1 98465752 98465799 -98729633 + GA-rich Low_complexity Low_complexity 1 49 0 6 1336 583 250 42 0 chr1 98465888 98466008 -98729424 - B1_Mur1 SINE Alu -22 127 3 6 1336 546 91 0 0 chr1 98466101 98466178 -98729254 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 6 1336 1365 285 72 2 chr1 98466312 98466783 -98728649 + L1_Mur3 LINE L1 530 1033 -6695 6 1336 849 133 111 7 chr1 98466783 98467036 -98728396 + RMER6C LTR ERVK 1 326 -364 6 1336 987 117 0 7 chr1 98467050 98467457 -98727975 + (TG)n Simple_repeat Simple_repeat 1 403 0 6 1336 1447 202 13 20 chr1 98467457 98467760 -98727672 + RMER6C LTR ERVK 384 684 -6 6 1336 1245 192 80 0 chr1 98467766 98467938 -98727494 + L1_Mur3 LINE L1 1028 1214 -6514 6 1336 333 0 0 0 chr1 98467938 98467975 -98727457 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1336 1599 167 33 20 chr1 98467975 98468150 -98727282 + L1_Mur3 LINE L1 1215 1400 -4480 6 1336 3762 156 94 7 chr1 98468150 98468828 -98726604 - RMER19A LTR ERVK 0 737 1 6 1336 1599 166 32 20 chr1 98468828 98469000 -98726432 + L1_Mur3 LINE L1 1401 1573 -4307 6 1336 37550 18 1 8 chr1 98468999 98474213 -98721219 + L1Md_A LINE L1 415 5586 -297 6 1336 8627 20 1 0 chr1 98474213 98475207 -98720225 + L1Md_A LINE L1 5587 6581 -1 6 1336 2418 222 121 0 chr1 98475405 98476116 -98719316 + L1_Mur3 LINE L1 1563 2359 -3521 6 1336 1337 178 8 0 chr1 98476562 98476803 -98718629 + L1_Mur3 LINE L1 2361 2603 -3277 6 1336 2410 226 43 67 chr1 98476799 98477511 -98717921 + Lx7 LINE L1 7002 7696 0 6 1336 191 203 0 17 chr1 98477752 98477812 -98717620 + A-rich Low_complexity Low_complexity 2 60 0 6 1336 333 155 0 0 chr1 98478747 98478805 -98716627 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1336 1296 207 9 16 chr1 98478809 98479218 -98716214 - RLTR20C LTR ERVK -40 494 1 6 1336 5290 155 61 9 chr1 98479285 98480405 -98715027 - MYSERV16_I-int LTR ERVK -75 2251 1074 6 1336 498 168 10 10 chr1 98480413 98480515 -98714917 - MYSERV16_I-int LTR ERVK -1393 933 832 6 1336 740 226 7 0 chr1 98480519 98480656 -98714776 - RLTR20A LTR ERVK -358 183 46 6 1336 327 211 0 19 chr1 98480723 98480882 -98714550 + (TA)n Simple_repeat Simple_repeat 1 156 0 6 1336 350 339 74 54 chr1 98481430 98481633 -98713799 + B4A SINE B4 1 207 -85 6 1336 4401 130 20 0 chr1 98481735 98482680 -98712752 - Lx LINE L1 -530 6124 5159 6 1336 3298 120 17 30 chr1 98482680 98483212 -98712220 + Lx LINE L1 6123 6647 -7 6 1336 306 0 0 0 chr1 98483497 98483531 -98711901 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1336 31 44 0 0 chr1 98483578 98483623 -98711809 + AT_rich Low_complexity Low_complexity 1 45 0 6 1336 1125 51 0 0 chr1 98483924 98484062 -98711370 + B1_Mm SINE Alu 1 138 -9 6 1336 300 315 137 79 chr1 98484120 98484361 -98711071 + L1ME1 LINE L1 5924 6178 -1 6 1336 267 268 137 39 chr1 98485517 98485613 -98709819 - L1_Rod LINE L1 -6324 848 749 6 1336 234 0 0 0 chr1 98485613 98485639 -98709793 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1336 267 268 137 39 chr1 98485639 98485775 -98709657 - L1_Rod LINE L1 -6424 748 594 6 1336 25 0 0 0 chr1 98485965 98485990 -98709442 + AT_rich Low_complexity Low_complexity 1 25 0 6 1336 331 303 195 33 chr1 98485994 98486121 -98709311 - Lx8 LINE L1 -11 7462 7321 6 1336 282 56 0 0 chr1 98486121 98486157 -98709275 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1336 331 303 195 33 chr1 98486157 98486363 -98709069 - Lx8 LINE L1 -153 7320 7076 6 1336 191 233 0 23 chr1 98486375 98486419 -98709013 - L2 LINE L2 -552 2867 2825 6 1336 651 60 0 0 chr1 98486491 98486575 -98708857 + (CAAGG)n Simple_repeat Simple_repeat 2 85 0 6 1336 1098 14 21 0 chr1 98486580 98486720 -98708712 + (GAGAA)n Simple_repeat Simple_repeat 4 146 0 6 1336 597 263 76 40 chr1 98488155 98488353 -98707079 - RMER10B LTR ERVL 0 398 194 6 1336 388 77 0 30 chr1 98488353 98488412 -98707020 + (GAA)n Simple_repeat Simple_repeat 3 60 0 6 1336 1374 33 0 16 chr1 98488412 98488595 -98706837 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1336 388 77 0 30 chr1 98488595 98488602 -98706830 + (GAA)n Simple_repeat Simple_repeat 1 7 0 6 1336 986 227 46 25 chr1 98488603 98488888 -98706544 - RMER10B LTR ERVL -107 291 1 6 1336 433 250 60 15 chr1 98488932 98489066 -98706366 - RLTR19-int LTR ERVK -75 3163 3024 6 1336 731 269 4 122 chr1 98489066 98489284 -98706148 + RMER17C LTR ERVK 1 186 -224 6 1336 1118 122 0 6 chr1 98489284 98489465 -98705967 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1336 731 270 27 40 chr1 98489465 98489530 -98705902 + RMER17C LTR ERVK 142 212 -198 6 1336 465 19 0 0 chr1 98489530 98489584 -98705848 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1336 731 270 27 40 chr1 98489584 98489757 -98705675 + RMER17C LTR ERVK 213 375 -35 6 1336 1436 224 126 63 chr1 98490158 98490682 -98704750 - RLTR19-int LTR ERVK -3130 3007 2451 6 1336 25 0 0 0 chr1 98490689 98490714 -98704718 + AT_rich Low_complexity Low_complexity 1 25 0 6 1336 2104 118 86 33 chr1 98490819 98491213 -98704219 + RLTR9F LTR ERVK 1 415 0 6 1336 961 247 89 45 chr1 98492051 98492432 -98703000 - RMER10B LTR ERVL 0 398 1 6 1336 613 231 130 53 chr1 98492439 98492728 -98702704 - ORR1D1 LTR MaLR -12 355 1 6 1336 1042 121 25 0 chr1 98493520 98493677 -98701755 + B2_Mm2 SINE B2 1 161 -34 6 1336 180 0 0 0 chr1 98493678 98493698 -98701734 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1336 831 339 86 34 chr1 98494909 98495617 -98699815 + Charlie1a DNA MER1_type 54 798 -657 6 1336 712 300 65 30 chr1 98495618 98496097 -98699335 + Lx9 LINE L1 5645 6146 -1327 6 1336 531 0 0 0 chr1 98496106 98496165 -98699267 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1336 564 15 0 0 chr1 98496165 98496229 -98699203 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1336 455 343 72 20 chr1 98496248 98496540 -98698892 + Lx9 LINE L1 6360 6666 -978 6 1336 1690 214 112 41 chr1 98496542 98497078 -98698354 + RMER4B LTR ERVK 1 574 -11 6 1336 342 225 0 0 chr1 98497091 98497162 -98698270 + Lx9 LINE L1 6662 6732 -912 6 1336 1164 277 138 32 chr1 98497190 98497749 -98697683 + Lx9 LINE L1 6797 7414 -230 6 1336 306 107 0 0 chr1 98497776 98497832 -98697600 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1336 270 0 0 0 chr1 98497858 98497888 -98697544 + (CAG)n Simple_repeat Simple_repeat 1 30 0 6 1336 824 192 0 11 chr1 98497891 98498070 -98697362 + GA-rich Low_complexity Low_complexity 3 179 0 6 1336 407 352 7 0 chr1 98498585 98498724 -98696708 - MER2B DNA MER2_type 0 336 197 6 1336 21 36 0 0 chr1 98498724 98498752 -98696680 + AT_rich Low_complexity Low_complexity 1 28 0 6 1336 458 254 43 14 chr1 98498918 98499058 -98696374 + Lx7 LINE L1 7223 7366 -330 6 1336 444 37 0 0 chr1 98499099 98499153 -98696279 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1336 426 20 0 0 chr1 98499244 98499295 -98696137 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1336 408 120 39 26 chr1 98499300 98499377 -98696055 + ORR1C2 LTR MaLR 302 379 -5 6 1336 1070 276 49 59 chr1 98499521 98499983 -98695449 - RLTR22_Mur LTR ERVK -185 1663 1309 6 1336 2741 224 156 62 chr1 98500000 98501170 -98694262 - RLTR22_Mur LTR ERVK -567 1281 1 1 1336 247 314 0 0 chr1 98501298 98501419 -98694013 + T-rich Low_complexity Low_complexity 1 121 0 2 1336 207 0 0 0 chr1 98501421 98501444 -98693988 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1336 900 168 12 29 chr1 98501894 98502066 -98693366 + URR1A DNA MER1_type 58 226 0 4 1336 801 266 5 16 chr1 98502085 98502272 -98693160 + B3 SINE B2 1 185 -31 5 1336 1075 247 190 79 chr1 98502272 98502752 -98692680 + MT2A LTR ERVL 1 533 0 6 1336 378 320 38 51 chr1 98502800 98502958 -98692474 - MER31B LTR ERV1 -310 156 1 7 1336 387 0 0 0 chr1 98503243 98503286 -98692146 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1336 2647 55 20 6 chr1 98504253 98504598 -98690834 - L1Md_F3 LINE L1 0 6584 6235 9 1336 354 100 0 0 chr1 98504692 98504752 -98690680 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1336 378 213 0 0 chr1 98504754 98504848 -98690584 + GA-rich Low_complexity Low_complexity 2 95 0 1 1336 317 289 113 5 chr1 98504909 98505104 -98690328 - L1MB1 LINE L1 -101 6067 5852 1 1336 21 0 0 0 chr1 98505148 98505169 -98690263 + AT_rich Low_complexity Low_complexity 1 21 0 1 1336 471 282 158 0 chr1 98505369 98505546 -98689886 + B3 SINE B2 5 209 -7 1 1336 21 57 0 0 chr1 98505546 98505581 -98689851 + AT_rich Low_complexity Low_complexity 1 35 0 1 1336 30 0 0 0 chr1 98507819 98507849 -98687583 + AT_rich Low_complexity Low_complexity 1 30 0 1 1336 234 292 0 44 chr1 98508427 98508495 -98686937 - RSINE1 SINE B4 -97 68 4 1 1336 317 232 12 0 chr1 98510004 98510086 -98685346 - RMER1B Other Other -2 1064 982 1 1336 283 191 114 29 chr1 98510120 98510190 -98685242 + MT2B LTR ERVL 181 256 -345 1 1336 2203 86 7 3 chr1 98510198 98510500 -98684932 + MTB LTR MaLR 98 400 0 2 1336 2652 280 38 28 chr1 98510500 98511702 -98683730 - RMER1B Other Other -83 983 3 1 1336 378 0 0 0 chr1 98511922 98511964 -98683468 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1336 1002 314 63 46 chr1 98511965 98512442 -98682990 - Lx9 LINE L1 -188 7456 6972 2 1336 934 28 0 0 chr1 98513675 98513782 -98681650 + U6 snRNA snRNA 1 107 0 2 1336 5018 54 0 6 chr1 98513782 98514414 -98681018 + L1Md_F2 LINE L1 4957 5584 -299 2 1336 7981 49 2 6 chr1 98514416 98515416 -98680016 + L1Md_F2 LINE L1 5587 6582 0 2 1336 583 200 0 0 chr1 98515603 98515703 -98679729 + Lx7 LINE L1 6895 6994 -702 2 1336 2251 244 31 104 chr1 98515702 98516519 -98678913 + Lx7 LINE L1 6940 7696 0 2 1336 3493 148 30 3 chr1 98516592 98517184 -98678248 - Lx2 LINE L1 -1 6996 6389 2 1336 291 312 85 36 chr1 98517471 98517916 -98677516 + L1M5 LINE L1 4201 4667 -1479 2 1336 1568 42 5 0 chr1 98517982 98518171 -98677261 - B2_Mm1a SINE B2 -3 190 1 2 1336 1129 259 93 27 chr1 98518313 98518614 -98676818 + ORR1D1 LTR MaLR 1 321 -53 3 1336 243 242 48 57 chr1 98518927 98519038 -98676394 + B1F SINE Alu 1 145 -4 3 1336 528 346 17 6 chr1 98519065 98519242 -98676190 + ID_B1 SINE B4 33 211 -13 3 1336 772 104 0 8 chr1 98519247 98519373 -98676059 + L1_Mus1 LINE L1 6443 6567 0 3 1336 21 0 0 0 chr1 98519422 98519443 -98675989 + AT_rich Low_complexity Low_complexity 1 21 0 3 1336 1450 214 213 68 chr1 98520865 98521651 -98673781 + RMER19B LTR ERVK 3 902 0 3 1336 5800 59 31 22 chr1 98521820 98522619 -98672813 - RLTR13B2 LTR ERVK -16 806 1 3 1336 1532 263 12 57 chr1 98522867 98523290 -98672142 + RMER1C Other Other 649 1052 -290 3 1336 2777 152 110 35 chr1 98523287 98523889 -98671543 + L1_Mus2 LINE L1 5920 6566 0 3 1336 932 260 78 0 chr1 98523884 98524165 -98671267 + RMER1C Other Other 1040 1342 0 3 1336 517 286 24 91 chr1 98525170 98525543 -98669889 - Lx9 LINE L1 -40 7604 7257 3 1336 1064 313 67 19 chr1 98525544 98526020 -98669412 + Lx9 LINE L1 6358 6856 -788 4 1336 1247 341 19 39 chr1 98526213 98526384 -98669048 - Lx9 LINE L1 -228 7416 7252 4 1336 2969 76 99 2 chr1 98526384 98526817 -98668615 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1336 1247 341 19 39 chr1 98526817 98527231 -98668201 - Lx9 LINE L1 -393 7251 6844 4 1336 316 371 39 11 chr1 98527234 98527414 -98668018 - Lx9 LINE L1 -976 6668 6484 4 1336 2140 153 44 44 chr1 98527415 98527825 -98667607 + Lx3A LINE L1 6571 6980 -1 4 1336 22 56 0 0 chr1 98528117 98528153 -98667279 + AT_rich Low_complexity Low_complexity 1 36 0 4 1336 1152 49 0 0 chr1 98528273 98528415 -98667017 + B1_Mus1 SINE Alu 2 143 -5 4 1336 440 314 77 10 chr1 98529210 98529406 -98666026 - Lx8 LINE L1 -394 7079 6871 4 1336 26 0 0 0 chr1 98530474 98530500 -98664932 + AT_rich Low_complexity Low_complexity 1 26 0 4 1336 21 0 0 0 chr1 98530677 98530698 -98664734 + AT_rich Low_complexity Low_complexity 1 21 0 4 1336 198 103 0 0 chr1 98530725 98530754 -98664678 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1336 211 347 87 87 chr1 98530885 98531068 -98664364 + B4A SINE B4 51 233 -59 5 1336 2531 116 5 23 chr1 98531010 98531407 -98664025 - MTB_Mm LTR MaLR -8 399 10 5 1336 204 125 0 0 chr1 98531616 98531648 -98663784 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1336 34 42 0 0 chr1 98531657 98531705 -98663727 + AT_rich Low_complexity Low_complexity 1 48 0 5 1336 337 343 65 6 chr1 98532338 98532508 -98662924 - MLT1D LTR MaLR -1 504 325 5 1336 225 404 86 39 chr1 98532531 98532786 -98662646 - MLT1E2 LTR MaLR -236 391 125 5 1336 1081 180 15 27 chr1 98534344 98534584 -98660848 + RLTR9C LTR ERVK 1 248 -167 5 1336 321 336 81 34 chr1 98534634 98534782 -98660650 + HAL1-3A_ME LINE L1 2285 2439 -419 5 1336 524 290 81 17 chr1 98534816 98534988 -98660444 - ORR1D1 LTR MaLR -191 183 1 5 1336 234 91 0 0 chr1 98535197 98535230 -98660202 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 5 1336 684 264 125 30 chr1 98535355 98535749 -98659683 + L1MA8 LINE L1 5541 5979 -210 6 1336 2678 33 3 3 chr1 98537330 98537661 -98657771 + IAPEY_LTR LTR ERVK 55 385 0 6 1336 1901 278 32 6 chr1 98537681 98538181 -98657251 + Lx9 LINE L1 6319 6831 -813 6 1336 373 204 73 43 chr1 98538188 98538319 -98657113 - MTD LTR MaLR 0 419 190 6 1336 3124 90 4 59 chr1 98538521 98539016 -98656416 - RLTR44C LTR ERVK -34 468 1 6 1336 1047 259 32 11 chr1 98539216 98539590 -98655842 + MYSERV6-int LTR ERVK 1585 1966 -6993 6 1336 260 362 9 9 chr1 98539722 98539828 -98655604 + RMER12 LTR ERVK 736 841 -481 6 1336 189 226 0 0 chr1 98539836 98539889 -98655543 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 6 1336 640 310 11 11 chr1 98539916 98540102 -98655330 + Lx8 LINE L1 6830 7015 -458 6 1336 1040 222 44 68 chr1 98540180 98540455 -98654977 - ORR1C2 LTR MaLR -5 402 105 6 1336 531 0 0 0 chr1 98540657 98540716 -98654716 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 7 1336 1058 105 0 0 chr1 98540719 98540862 -98654570 - B1_Mus1 SINE Alu -4 144 2 7 1336 4183 44 2 19 chr1 98540892 98541421 -98654011 - L1Md_F2 LINE L1 0 6582 6063 7 1336 201 39 0 0 chr1 98542966 98542992 -98652440 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1336 354 274 35 17 chr1 98543306 98543421 -98652011 + B1F SINE Alu 14 130 -19 7 1336 228 213 32 32 chr1 98543774 98543837 -98651595 + GA-rich Low_complexity Low_complexity 3 65 0 7 1336 442 345 82 78 chr1 98544276 98544328 -98651104 + B4A SINE B4 26 72 -220 7 1336 776 160 71 39 chr1 98544328 98544510 -98650922 - B2_Mm2 SINE B2 -7 188 1 7 1336 442 345 82 78 chr1 98544510 98544702 -98650730 + B4A SINE B4 73 271 -21 7 1336 425 167 24 0 chr1 98544954 98545038 -98650394 - Lx3C LINE L1 -5 6971 6886 7 1336 180 125 0 0 chr1 98545635 98545667 -98649765 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 7 1336 263 436 37 74 chr1 98545713 98546171 -98649261 + MLT1K LTR MaLR 79 519 -76 8 1336 1120 229 64 0 chr1 98546209 98546489 -98648943 + Lx9 LINE L1 6839 7136 -508 8 1336 1253 219 47 31 chr1 98546485 98546871 -98648561 + Lx9 LINE L1 7253 7644 0 8 1336 1119 226 37 30 chr1 98546881 98547209 -98648223 + L1_Mur3 LINE L1 4561 4890 -990 8 1336 558 200 57 7 chr1 98547505 98547646 -98647786 - L1_Mur3 LINE L1 -1405 4475 4328 8 1336 418 200 80 0 chr1 98547650 98547750 -98647682 + L1_Mur3 LINE L1 4908 5015 -862 8 1336 857 203 89 8 chr1 98547755 98548017 -98647415 - RLTR25A LTR ERVK 0 1103 698 8 1336 344 212 45 0 chr1 98548017 98548083 -98647349 - Lx6 LINE L1 -195 7265 7197 8 1336 298 273 14 57 chr1 98548107 98548247 -98647185 + L1MC1 LINE L1 4675 4808 -1338 8 1336 22 35 0 0 chr1 98548423 98548452 -98646980 + AT_rich Low_complexity Low_complexity 1 29 0 8 1336 759 302 154 56 chr1 98548452 98548707 -98646725 - Lx8 LINE L1 -28 7445 7179 8 1336 405 0 0 0 chr1 98548707 98548752 -98646680 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1336 759 302 154 56 chr1 98548752 98549047 -98646385 - Lx8 LINE L1 -295 7178 6845 8 1336 189 0 0 0 chr1 98549047 98549068 -98646364 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 1336 759 302 154 56 chr1 98549068 98549173 -98646259 - Lx8 LINE L1 -629 6844 6725 8 1336 252 346 133 0 chr1 98549186 98549374 -98646058 - Lx8 LINE L1 -37 7436 7224 9 1336 740 171 73 0 chr1 98549377 98549500 -98645932 + B1_Mus2 SINE Alu 3 134 -13 9 1336 1154 34 14 0 chr1 98549501 98549647 -98645785 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 9 1336 1185 108 0 0 chr1 98549663 98549839 -98645593 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 9 1336 201 167 0 0 chr1 98549840 98549876 -98645556 + A-rich Low_complexity Low_complexity 3 38 0 9 1336 730 338 64 17 chr1 98549876 98550345 -98645087 - Lx8 LINE L1 -235 7238 6748 9 1336 829 319 61 17 chr1 98550453 98550992 -98644440 + L1MC1 LINE L1 5659 6221 -112 8 1336 405 0 0 0 chr1 98551576 98551621 -98643811 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1336 540 45 0 0 chr1 98552089 98552156 -98643276 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1336 21 57 0 0 chr1 98552501 98552536 -98642896 + AT_rich Low_complexity Low_complexity 1 35 0 9 1336 507 155 22 65 chr1 98552536 98552674 -98642758 - Lx3A LINE L1 0 6981 6850 9 1336 883 237 200 0 chr1 98553019 98553369 -98642063 + Lx9 LINE L1 7222 7641 -3 1 1336 326 188 29 0 chr1 98553825 98553894 -98641538 - Lx9 LINE L1 -206 7438 7368 1 1336 246 143 82 0 chr1 98554140 98554189 -98641243 + MT2A LTR ERVL 1 53 -548 1 1336 183 42 0 0 chr1 98554352 98554376 -98641056 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1336 302 288 0 24 chr1 98554376 98554458 -98640974 + MT2A LTR ERVL 54 133 -400 1 1336 395 140 0 0 chr1 98554453 98554510 -98640922 + MT2A LTR ERVL 94 150 -383 1 1336 235 295 33 0 chr1 98554459 98554520 -98640912 + MTE2b LTR MaLR 100 162 -217 1 1336 431 313 80 57 chr1 98554533 98554834 -98640598 + LTR41 LTR ERVL 452 759 -9 1 1336 316 330 50 54 chr1 98555106 98555327 -98640105 - MER34A1 LTR ERV1 -73 514 295 1 1336 442 157 16 0 chr1 98555630 98555751 -98639681 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1336 2343 179 14 67 chr1 98556154 98556256 -98639176 - RMER19C LTR ERVK 0 611 518 1 1336 3359 28 5 0 chr1 98556256 98556650 -98638782 + MTA_Mm LTR MaLR 1 396 0 1 1336 2343 179 14 67 chr1 98556650 98557039 -98638393 - RMER19C LTR ERVK -94 517 146 1 1336 257 264 0 0 chr1 98559288 98559341 -98636091 + B4A SINE B4 10 62 -230 1 1336 218 264 19 0 chr1 98559494 98559547 -98635885 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1336 35307 75 2 6 chr1 98559796 98565799 -98629633 + L1Md_F3 LINE L1 416 6394 -190 1 20 32232 73 2 4 chr1 98565806 98571026 -98624406 + L1Md_F2 LINE L1 285 5589 -297 1 1337 7884 56 2 2 chr1 98571026 98572022 -98623410 + L1Md_F2 LINE L1 5590 6585 0 1 1337 1526 31 0 20 chr1 98572018 98572215 -98623217 + L1Md_F3 LINE L1 6381 6573 -11 1 1337 21 0 0 0 chr1 98572852 98572873 -98622559 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 423 0 0 0 chr1 98573348 98573395 -98622037 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1337 1151 69 0 0 chr1 98573395 98573540 -98621892 - B1_Mus1 SINE Alu -3 145 1 1 1337 367 186 0 47 chr1 98574908 98575015 -98620417 + Lx3A LINE L1 6823 6924 -57 1 1337 7538 31 4 2 chr1 98575045 98575944 -98619488 - L1Md_F3 LINE L1 -3 6581 5681 1 1337 5163 20 0 0 chr1 98575938 98576541 -98618891 + L1Md_F3 LINE L1 4984 5586 -297 1 1337 8434 30 0 7 chr1 98576541 98576559 -98618873 + L1Md_A LINE L1 5587 5602 -980 1 1337 1828 137 112 68 chr1 98576559 98577014 -98618418 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1337 8434 30 0 7 chr1 98577014 98577997 -98617435 + L1Md_A LINE L1 5603 6581 -1 1 1337 450 0 0 0 chr1 98578053 98578103 -98617329 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1 1337 3061 61 0 0 chr1 98578103 98578480 -98616952 - L1_Mm LINE L1 -206 5677 5301 1 1337 2684 60 8 0 chr1 98578471 98578824 -98616608 + L1_Mm LINE L1 4937 5292 -591 1 1337 638 122 184 16 chr1 98579003 98579128 -98616304 + B1_Mus1 SINE Alu 2 147 -1 1 1337 753 106 0 0 chr1 98579130 98579243 -98616189 + (GGA)n Simple_repeat Simple_repeat 3 115 0 1 1337 679 295 35 21 chr1 98580723 98581010 -98614422 - L1M2 LINE L1 -549 5751 5461 1 1337 2464 324 88 23 chr1 98582411 98583468 -98611964 - Lx8 LINE L1 -181 7292 6171 1 1337 459 0 0 0 chr1 98583468 98583519 -98611913 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1337 2464 324 88 23 chr1 98583519 98583656 -98611776 - Lx8 LINE L1 -1303 6170 6021 1 1337 685 320 56 6 chr1 98583851 98584407 -98611025 - L1M2 LINE L1 -607 5693 5109 1 1337 242 409 29 57 chr1 98584931 98585211 -98610221 + L2c LINE L2 2724 2995 -424 1 1337 338 353 14 22 chr1 98585245 98585384 -98610048 + L2c LINE L2 3061 3198 -189 1 1337 320 299 13 0 chr1 98585477 98585554 -98609878 + B4A SINE B4 1 78 -214 1 1337 477 323 31 26 chr1 98585595 98585786 -98609646 + B4A SINE B4 90 281 -11 1 1337 432 0 0 0 chr1 98585787 98585835 -98609597 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1337 234 0 0 0 chr1 98586694 98586720 -98608712 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1337 834 190 45 17 chr1 98586729 98586906 -98608526 - RLTR33 LTR ERVK -496 182 1 1 1337 2600 198 43 20 chr1 98586938 98587490 -98607942 + RLTR33 LTR ERVK 114 678 0 1 1337 839 172 0 33 chr1 98588331 98588481 -98606951 + B1_Mur3 SINE Alu 4 148 -1 1 1337 3825 207 26 6 chr1 98588494 98589309 -98606123 + Lx2B LINE L1 6170 7000 0 1 1337 424 304 55 89 chr1 98591291 98591330 -98604102 - ORR1E LTR MaLR -1 378 343 1 1337 1232 50 6 0 chr1 98591330 98591490 -98603942 + L1Md_T LINE L1 6421 6581 -1 1 1337 1008 279 79 13 chr1 98591490 98591802 -98603630 - ORR1E LTR MaLR -20 339 6 1 1337 1153 257 25 3 chr1 98591856 98592141 -98603291 - Lx6 LINE L1 -712 6748 6458 1 1337 2725 253 52 56 chr1 98592146 98592412 -98603020 + Lx6 LINE L1 5629 5890 -1570 1 1337 2013 138 37 3 chr1 98592412 98592738 -98602694 + Lx2 LINE L1 6661 6997 0 1 1337 2725 253 52 56 chr1 98592738 98593317 -98602115 + Lx6 LINE L1 5891 6471 -989 1 1337 445 348 80 42 chr1 98593359 98593761 -98601671 - L1MEf LINE L1 -5212 988 572 1 1337 630 71 0 0 chr1 98593937 98594021 -98601411 + (GAA)n Simple_repeat Simple_repeat 3 86 0 1 1337 225 0 0 0 chr1 98594021 98594045 -98601387 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1 1337 473 337 24 0 chr1 98594052 98594218 -98601214 - Lx8 LINE L1 -1097 6376 6207 1 1337 640 289 46 72 chr1 98594247 98594268 -98601164 - B3A SINE B2 -1 197 176 1 1337 261 0 0 0 chr1 98594268 98594297 -98601135 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1337 640 289 46 72 chr1 98594297 98594469 -98600963 - B3A SINE B2 -23 175 9 1 1337 566 238 8 8 chr1 98594694 98594821 -98600611 + Lx8 LINE L1 6385 6511 -962 1 1337 499 267 44 7 chr1 98594921 98595057 -98600375 + B1_Mur1 SINE Alu 3 143 -6 1 1337 233 118 98 0 chr1 98595246 98595297 -98600135 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1 1337 282 306 80 20 chr1 98595479 98595579 -98599853 + B1F SINE Alu 35 140 -9 1 1337 31903 88 10 5 chr1 98595753 98600895 -98594537 + L1Md_F2 LINE L1 420 5586 -297 1 1337 7852 57 4 3 chr1 98600896 98601890 -98593542 + L1Md_F2 LINE L1 5588 6582 0 1 1337 6000 76 2 2 chr1 98601890 98602696 -98592736 + L1Md_F2 LINE L1 4781 5586 -297 1 1337 7513 67 12 4 chr1 98602697 98603682 -98591750 + L1Md_F2 LINE L1 5588 6580 -2 1 1337 225 375 116 0 chr1 98604472 98604584 -98590848 - PB1 SINE Alu -2 125 1 1 1337 277 232 0 0 chr1 98604746 98604802 -98590630 + Lx6 LINE L1 7018 7073 -387 1 1337 1457 208 0 11 chr1 98604802 98605084 -98590348 + Lx6 LINE L1 7178 7456 -4 1 1337 21 36 0 0 chr1 98605764 98605792 -98589640 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 206 286 0 31 chr1 98606063 98606128 -98589304 + CT-rich Low_complexity Low_complexity 2 64 0 1 1337 28 0 0 0 chr1 98606431 98606459 -98588973 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 4492 131 35 17 chr1 98606534 98607229 -98588203 + RMER19A LTR ERVK 1 714 -23 1 1337 924 109 72 7 chr1 98607229 98607356 -98588076 + B1_Mus1 SINE Alu 1 137 -11 1 1337 207 0 0 0 chr1 98607356 98607379 -98588053 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1337 924 109 72 7 chr1 98607379 98607390 -98588042 + B1_Mus1 SINE Alu 138 148 0 1 1337 4492 131 35 17 chr1 98607390 98607416 -98588016 + RMER19A LTR ERVK 715 735 -2 1 1337 3072 128 2 11 chr1 98608467 98608942 -98586490 + Lx2 LINE L1 6524 6994 -3 1 1337 290 216 2 54 chr1 98609260 98609349 -98586083 - B3 SINE B2 -104 91 6 1 1337 21 36 0 0 chr1 98610339 98610367 -98585065 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 330 45 0 0 chr1 98611111 98611155 -98584277 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1337 209 273 0 0 chr1 98611170 98611225 -98584207 + GA-rich Low_complexity Low_complexity 1 55 0 1 1337 264 297 27 13 chr1 98611598 98611673 -98583759 - MLT1A0 LTR MaLR -213 152 77 1 1337 536 312 37 132 chr1 98613013 98613692 -98581740 - Lx9 LINE L1 -76 7568 6955 1 1337 863 279 38 22 chr1 98614222 98614541 -98580891 - Lx6 LINE L1 0 7460 7137 1 1337 8065 29 0 0 chr1 98614551 98615684 -98579748 - L1Md_T LINE L1 0 6582 5450 1 1337 633 277 64 25 chr1 98615669 98615983 -98579449 - Lx5 LINE L1 -811 6885 6454 1 1337 234 237 16 102 chr1 98615990 98616117 -98579315 - Lx8 LINE L1 0 7473 7358 1 1337 201 180 0 0 chr1 98616133 98616183 -98579249 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1337 2133 294 87 1 chr1 98616190 98617015 -98578417 - Lx8 LINE L1 -146 7327 6432 1 1337 1724 145 49 26 chr1 98617348 98617826 -98577606 - RLTR26 LTR ERVK 0 642 1 1 1337 333 254 0 0 chr1 98617940 98617999 -98577433 + B1F1 SINE Alu 1 59 -90 1 1337 456 35 0 0 chr1 98618711 98618769 -98576663 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1337 1384 289 53 5 chr1 98619125 98619620 -98575812 + Lx5 LINE L1 6455 6942 -108 1 1337 243 288 0 0 chr1 98620500 98620559 -98574873 - RMER1A Other Other -671 359 301 1 1337 21 57 0 0 chr1 98621018 98621053 -98574379 + AT_rich Low_complexity Low_complexity 1 35 0 1 1337 3558 212 9 7 chr1 98621639 98621754 -98573678 - RMER1A Other Other -10 1020 901 1 1337 405 0 0 0 chr1 98621754 98621799 -98573633 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1337 3558 249 14 4 chr1 98621799 98622758 -98572674 - RMER1A Other Other -130 900 66 1 1337 219 139 0 0 chr1 98622828 98622864 -98572568 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1337 756 152 14 0 chr1 98622879 98623017 -98572415 - L1_Mm LINE L1 -692 5191 5052 1 1337 6135 89 8 1 chr1 98623029 98623926 -98571506 + L1_Mus3 LINE L1 5735 6637 -1 1 1337 1102 243 159 5 chr1 98623967 98624364 -98571068 + Lx9 LINE L1 7187 7644 0 1 1337 339 379 60 28 chr1 98624393 98624575 -98570857 - B3 SINE B2 -28 188 1 1 1337 318 231 71 98 chr1 98624908 98625133 -98570299 + L1_Mur3 LINE L1 4781 4999 -881 1 1337 1362 302 71 14 chr1 98625165 98625853 -98569579 + L1_Rod LINE L1 5119 5845 -2 1 1337 2049 301 115 23 chr1 98626250 98627299 -98568133 + Lx8 LINE L1 6105 7250 -223 1 1337 376 194 15 0 chr1 98627308 98627375 -98568057 + ORR1B2 LTR MaLR 1 68 -299 1 1337 854 157 365 5 chr1 98627795 98628006 -98567426 + ORR1B2 LTR MaLR 72 359 -8 1 1337 295 217 32 11 chr1 98628086 98628179 -98567253 + Lx2 LINE L1 6903 6997 0 1 1337 1676 257 122 27 chr1 98628428 98628573 -98566859 - RLTR40 LTR ERVK -47 770 617 1 1337 333 0 0 0 chr1 98628573 98628610 -98566822 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1337 1676 257 122 27 chr1 98628610 98629167 -98566265 - RLTR40 LTR ERVK -201 616 1 1 1337 402 21 0 0 chr1 98629362 98629409 -98566023 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 1 1337 1452 23 0 0 chr1 98629410 98629582 -98565850 + (GGAGA)n Simple_repeat Simple_repeat 3 174 0 1 1337 58 28 0 0 chr1 98629620 98629692 -98565740 + AT_rich Low_complexity Low_complexity 1 72 0 1 1337 843 261 34 25 chr1 98629725 98629961 -98565471 + ORR1D1 LTR MaLR 1 238 -136 1 1337 2005 113 21 17 chr1 98629967 98630344 -98565088 + RLTR10A LTR ERVK 1 388 -2 1 1337 1633 181 27 96 chr1 98630377 98630753 -98564679 + ORR1B1 LTR MaLR 1 392 -2 1 1337 334 180 0 0 chr1 98630772 98630833 -98564599 + ORR1D1 LTR MaLR 314 374 0 1 1337 1475 226 56 3 chr1 98630833 98631175 -98564257 + ORR1D1-int LTR MaLR 1 360 -1010 1 1337 3370 105 0 0 chr1 98631175 98631691 -98563741 - L1_Mm LINE L1 -1410 4473 3958 2 1337 452 310 89 66 chr1 98631761 98632110 -98563322 + RMER10A LTR ERVL 58 414 -28 2 1337 3418 247 50 21 chr1 98632097 98632599 -98562833 + ORR1D1-int LTR MaLR 420 946 -424 1 1337 2845 79 34 5 chr1 98632599 98633008 -98562424 - BGLII LTR ERVK 0 421 1 2 1337 3418 247 50 21 chr1 98633008 98633361 -98562071 + ORR1D1-int LTR MaLR 947 1300 -70 1 1337 372 165 217 36 chr1 98633362 98633403 -98562029 - RLTR43A LTR ERVK -1 363 301 2 1337 711 35 0 0 chr1 98633403 98633489 -98561943 + (GGGAGA)n Simple_repeat Simple_repeat 5 90 0 2 1337 372 165 217 36 chr1 98633489 98633585 -98561847 - RLTR43A LTR ERVK -64 300 202 2 1337 305 250 15 0 chr1 98633772 98633840 -98561592 + ORR1D1-int LTR MaLR 1295 1363 -7 1 1337 1358 248 21 24 chr1 98633848 98634203 -98561229 + ORR1D1 LTR MaLR 1 361 -23 1 1337 492 219 0 0 chr1 98634535 98634631 -98560801 + ORR1D1 LTR MaLR 279 374 0 1 1337 393 58 0 0 chr1 98635130 98635182 -98560250 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1337 333 0 0 0 chr1 98635184 98635221 -98560211 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1337 351 322 0 0 chr1 98635222 98635312 -98560120 - B1_Mur1 SINE Alu -17 132 43 2 1337 332 302 147 60 chr1 98635550 98635884 -98559548 - L1MC4 LINE L1 -1002 7040 6678 2 1337 428 271 0 0 chr1 98636062 98636147 -98559285 - RSINE1 SINE B4 -32 133 49 2 1337 369 43 0 0 chr1 98636156 98636203 -98559229 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1337 396 147 0 0 chr1 98636203 98636278 -98559154 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1337 602 60 12 0 chr1 98636328 98636411 -98559021 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2 1337 3599 129 51 36 chr1 98636450 98637174 -98558258 - RMER17A LTR ERVK -16 735 1 2 1337 270 0 0 0 chr1 98637219 98637249 -98558183 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1337 1368 70 3 22 chr1 98637343 98637548 -98557884 - L1_Mus3 LINE L1 -374 5805 5607 2 1337 476 18 0 0 chr1 98637526 98637583 -98557849 + L1_Mus3 LINE L1 5797 5853 -785 2 1337 27472 36 3 0 chr1 98637582 98641096 -98554336 + L1Md_T LINE L1 2064 5586 -297 2 1337 8418 36 0 0 chr1 98641096 98642092 -98553340 + L1Md_T LINE L1 5587 6582 0 2 1337 285 29 0 0 chr1 98642148 98642182 -98553250 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1337 242 338 0 13 chr1 98642334 98642412 -98553020 - L2b LINE L2 -80 3295 3219 2 1337 3741 101 58 61 chr1 98642430 98643073 -98552359 + L1_Mus2 LINE L1 5926 6566 0 2 1337 358 278 37 12 chr1 98643112 98643276 -98552156 - L1MC LINE L1 -3745 2401 2234 2 1337 189 271 137 59 chr1 98643626 98643728 -98551704 + L4 LINE RTE 614 723 -1306 2 1337 405 0 0 0 chr1 98644214 98644259 -98551173 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1337 839 220 48 0 chr1 98645504 98645690 -98549742 + URR1B DNA MER1_type 1 195 -30 2 1337 31877 73 6 11 chr1 98645870 98651093 -98544339 + L1Md_F3 LINE L1 396 5585 -298 2 1337 8258 35 4 2 chr1 98651094 98652090 -98543342 + L1Md_F3 LINE L1 5587 6584 0 2 1337 235 83 292 0 chr1 98652313 98652361 -98543071 + URR1B DNA MER1_type 164 225 0 2 1337 1237 148 33 5 chr1 98652443 98652653 -98542779 - RMER6A LTR ERVK 0 756 541 2 1337 532 123 0 0 chr1 98652643 98652724 -98542708 - PB1D9 SINE Alu -39 81 1 2 1337 1171 311 88 14 chr1 98653710 98654293 -98541139 + Lx8 LINE L1 6794 7419 -54 2 1337 630 0 0 0 chr1 98654293 98654363 -98541069 + (GAA)n Simple_repeat Simple_repeat 1 70 0 2 1337 270 0 0 0 chr1 98654361 98654391 -98541041 + (CAG)n Simple_repeat Simple_repeat 2 31 0 2 1337 1005 86 0 0 chr1 98654391 98654554 -98540878 + (GAA)n Simple_repeat Simple_repeat 3 165 0 2 1337 7867 36 1 19 chr1 98654801 98655814 -98539618 - L1Md_F2 LINE L1 -1 6581 5587 2 1337 454 76 25 0 chr1 98656031 98656110 -98539322 + L1_Mus3 LINE L1 6551 6631 -7 2 1337 245 135 43 33 chr1 98656236 98656328 -98539104 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 1337 37 0 0 0 chr1 98656477 98656514 -98538918 + AT_rich Low_complexity Low_complexity 1 37 0 2 1337 837 268 76 89 chr1 98656594 98657074 -98538358 - RMER2 LTR ERV1 -27 540 1 2 1337 1170 215 119 13 chr1 98657170 98657547 -98537885 + Lx9 LINE L1 7165 7581 -63 2 1337 423 0 0 0 chr1 98657691 98657738 -98537694 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1337 236 250 47 0 chr1 98657859 98657923 -98537509 + MTEb LTR MaLR 11 77 -302 2 1337 261 303 51 26 chr1 98657917 98657995 -98537437 - B1F SINE Alu -64 85 6 2 1337 438 158 20 31 chr1 98658779 98658877 -98536555 + RMER1A Other Other 929 1025 -5 2 1337 630 105 15 29 chr1 98658891 98659028 -98536404 + (TCTCTG)n Simple_repeat Simple_repeat 6 140 0 2 1337 330 196 0 0 chr1 98659025 98659117 -98536315 + (TG)n Simple_repeat Simple_repeat 1 92 0 2 1337 322 308 108 6 chr1 98660423 98660580 -98534852 - MLT1B LTR MaLR 0 390 218 2 1337 239 349 158 36 chr1 98660668 98661004 -98534428 + MLT1D LTR MaLR 90 466 -39 2 1337 377 264 138 31 chr1 98661006 98661201 -98534231 + B3 SINE B2 1 216 0 2 1337 647 201 52 7 chr1 98662125 98662260 -98533172 + B1_Mur2 SINE Alu 7 147 -2 2 1337 264 122 0 0 chr1 98662263 98662304 -98533128 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1337 731 297 83 50 chr1 98662516 98662853 -98532579 - MLT1A0 LTR MaLR -8 357 10 2 1337 251 258 79 0 chr1 98663184 98663273 -98532159 + L1M4b LINE L1 1007 1102 -6232 2 1337 21 0 0 0 chr1 98663286 98663307 -98532125 + AT_rich Low_complexity Low_complexity 1 21 0 2 1337 314 335 125 27 chr1 98663440 98663664 -98531768 + L1M4b LINE L1 1310 1555 -5779 2 1337 827 90 0 8 chr1 98663899 98664022 -98531410 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 2 1337 1674 287 30 43 chr1 98665513 98666114 -98529318 - Lx5 LINE L1 -24 7026 6450 2 1337 267 152 0 0 chr1 98666141 98666187 -98529245 + C-rich Low_complexity Low_complexity 2 47 0 2 1337 368 323 15 23 chr1 98666200 98666333 -98529099 - Lx6 LINE L1 -751 6709 6578 2 1337 863 16 33 0 chr1 98666836 98666957 -98528475 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 1337 2579 144 74 22 chr1 98666957 98667446 -98527986 + RLTR12B LTR ERVK 15 528 0 2 1337 24 0 0 0 chr1 98668596 98668620 -98526812 + AT_rich Low_complexity Low_complexity 1 24 0 2 1337 787 251 92 17 chr1 98668782 98669021 -98526411 - Lx8 LINE L1 -179 7294 7038 2 1337 25 58 0 42 chr1 98669701 98669773 -98525659 + AT_rich Low_complexity Low_complexity 1 69 0 2 1337 252 176 57 34 chr1 98669901 98669989 -98525443 - Lx7 LINE L1 0 7696 7607 2 1337 459 211 10 159 chr1 98670088 98670296 -98525136 - Lx7 LINE L1 -266 7430 7254 2 1337 22 35 0 0 chr1 98670800 98670829 -98524603 + AT_rich Low_complexity Low_complexity 1 29 0 2 1337 253 358 0 0 chr1 98670932 98671027 -98524405 - B1F1 SINE Alu -2 147 53 2 1337 1315 152 0 18 chr1 98671169 98671396 -98524036 - Lx2 LINE L1 0 6997 6775 2 1337 6292 137 13 8 chr1 98671398 98672688 -98522744 - Lx2 LINE L1 -356 6641 5346 2 1337 5805 88 19 13 chr1 98672687 98674243 -98521189 - L1VL4 LINE L1 -1803 1756 191 2 1337 470 180 207 52 chr1 98674549 98674662 -98520770 - RLTR25A LTR ERVK 0 1103 963 2 1337 600 14 0 0 chr1 98674662 98674731 -98520701 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1337 423 0 0 0 chr1 98674731 98674777 -98520655 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1337 470 253 276 23 chr1 98674777 98674893 -98520539 - RLTR25A LTR ERVK -141 962 736 2 1337 408 350 46 65 chr1 98675002 98675219 -98520213 - B4A SINE B4 -78 214 2 2 1337 276 375 23 96 chr1 98675347 98675524 -98519908 - RSINE1 SINE B4 0 165 2 2 1337 2814 161 131 18 chr1 98675677 98676226 -98519206 - RMER19C LTR ERVK 0 611 1 2 1337 571 335 19 13 chr1 98676258 98676415 -98519017 + RSINE1 SINE B4 8 165 0 2 1337 378 0 0 0 chr1 98676635 98676677 -98518755 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1337 249 57 0 0 chr1 98676781 98676816 -98518616 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1337 25 31 0 0 chr1 98676853 98676885 -98518547 + AT_rich Low_complexity Low_complexity 1 32 0 2 1337 657 108 47 12 chr1 98677225 98677394 -98518038 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 2 1337 540 284 45 89 chr1 98677524 98677771 -98517661 + ORR1E LTR MaLR 30 265 -94 2 1337 227 388 94 13 chr1 98678077 98678312 -98517120 - MLT2D LTR ERVL -157 257 4 2 1337 311 339 84 27 chr1 98678774 98679035 -98516397 - B4A SINE B4 -16 276 1 2 1337 1852 225 38 10 chr1 98681209 98681609 -98513823 + MTD LTR MaLR 1 411 -8 2 1337 371 73 18 0 chr1 98682027 98682082 -98513350 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 2 1337 1739 235 23 26 chr1 98682082 98682634 -98512798 + Lx4B LINE L1 6372 6931 -45 2 1337 2430 141 23 21 chr1 98682915 98683342 -98512090 + Lx3B LINE L1 6546 6973 0 2 1337 451 263 81 60 chr1 98683403 98683751 -98511681 + L1MA9 LINE L1 5283 5637 -663 2 1337 366 23 0 0 chr1 98683767 98683810 -98511622 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1337 191 36 36 0 chr1 98684287 98684315 -98511117 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1337 530 108 0 0 chr1 98684321 98684395 -98511037 - B1_Mus2 SINE Alu -5 142 69 2 1337 463 336 6 88 chr1 98684655 98684815 -98510617 + RSINE1 SINE B4 17 163 -2 2 1337 721 266 76 12 chr1 98685160 98685502 -98509930 + L1MA9 LINE L1 5802 6165 -147 2 1337 414 57 0 0 chr1 98685629 98685682 -98509750 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1337 324 158 10 59 chr1 98685682 98685783 -98509649 + (CATATA)n Simple_repeat Simple_repeat 4 99 0 2 1337 198 0 0 0 chr1 98686346 98686368 -98509064 + (TTG)n Simple_repeat Simple_repeat 1 22 0 2 1337 810 337 38 74 chr1 98686448 98686868 -98508564 + Lx5 LINE L1 6567 6971 -79 2 1337 983 286 189 31 chr1 98688004 98688045 -98507387 - MER67C LTR ERV1 -1 710 665 2 1337 357 0 57 0 chr1 98688045 98688098 -98507334 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 2 1337 983 286 189 31 chr1 98688098 98688443 -98506989 - MER67C LTR ERV1 -47 664 261 2 1337 1985 155 18 78 chr1 98688443 98688790 -98506642 + ORR1C1 LTR MaLR 5 336 -42 2 1337 1296 134 0 5 chr1 98688790 98688985 -98506447 + B2_Mm2 SINE B2 2 195 0 2 1337 1985 155 18 78 chr1 98688985 98689035 -98506397 + ORR1C1 LTR MaLR 337 378 0 2 1337 983 286 189 31 chr1 98689035 98689257 -98506175 - MER67C LTR ERV1 -451 260 6 2 1337 284 360 90 11 chr1 98689265 98689442 -98505990 + MER119 DNA MER1_type 32 222 -361 2 1337 314 327 98 45 chr1 98689492 98689604 -98505828 + B1F1 SINE Alu 17 134 -15 2 1337 27 0 0 0 chr1 98690202 98690229 -98505203 + AT_rich Low_complexity Low_complexity 1 27 0 2 1337 241 317 90 16 chr1 98690247 98690369 -98505063 + MER119 DNA MER1_type 252 382 -201 2 1337 240 367 28 35 chr1 98692082 98692226 -98503206 + MER67C LTR ERV1 245 387 -324 2 1337 255 61 0 0 chr1 98692369 98692402 -98503030 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1337 718 264 86 41 chr1 98692719 98692985 -98502447 + ORR1D2 LTR MaLR 11 288 -82 3 1337 1523 249 85 34 chr1 98692985 98693559 -98501873 - RLTR26 LTR ERVK 0 642 5 3 1337 303 195 122 33 chr1 98693559 98693649 -98501783 + ORR1D2 LTR MaLR 282 379 0 3 1337 662 188 98 38 chr1 98693655 98693788 -98501644 - B1_Mur3 SINE Alu 0 149 9 3 1337 887 240 148 13 chr1 98693819 98694136 -98501296 + RMER5 LTR ERV1 70 429 -105 3 1337 506 272 0 34 chr1 98694419 98694537 -98500895 + RSINE1 SINE B4 12 125 -40 3 1337 481 280 195 39 chr1 98695279 98695663 -98499769 + RLTR11B LTR ERVK 1 466 -62 3 1337 417 202 20 10 chr1 98696104 98696204 -98499228 - RLTR10A LTR ERVK -164 247 147 3 1337 2908 246 56 8 chr1 98696476 98697213 -98498219 + Lx5 LINE L1 6267 7038 -12 3 1338 342 67 0 0 chr1 98697240 98697285 -98498147 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1338 4721 64 22 5 chr1 98697545 98698171 -98497261 + L1Md_F2 LINE L1 5942 6578 -4 3 1338 319 277 34 51 chr1 98698232 98698350 -98497082 + PB1D10 SINE Alu 2 117 0 3 1338 22 0 0 0 chr1 98699053 98699075 -98496357 + AT_rich Low_complexity Low_complexity 1 22 0 3 1338 681 141 15 59 chr1 98699176 98699312 -98496120 - B1_Mus2 SINE Alu 0 147 18 3 1338 657 175 0 9 chr1 98699734 98699849 -98495583 + B1_Mur3 SINE Alu 36 149 0 3 1338 314 287 55 9 chr1 98700616 98700725 -98494707 + RMER30 DNA MER1_type 82 195 -7 3 1338 542 202 16 70 chr1 98700812 98700998 -98494434 + RLTR15 LTR ERVK 33 208 -151 3 1338 316 271 130 37 chr1 98701052 98701267 -98494165 + RLTR15 LTR ERVK 104 338 -21 3 1338 279 0 0 0 chr1 98701345 98701376 -98494056 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1338 326 339 151 8 chr1 98701376 98701495 -98493937 - ID_B1 SINE B4 -11 213 78 3 1338 252 0 0 0 chr1 98701566 98701594 -98493838 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1338 795 165 67 0 chr1 98701799 98701963 -98493469 - RMER17C LTR ERVK -235 175 1 3 1338 225 0 0 0 chr1 98702413 98702438 -98492994 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 3 1338 493 318 133 41 chr1 98702532 98702997 -98492435 - L1M4c LINE L1 -4563 1821 1314 3 1338 2210 119 47 0 chr1 98703074 98703418 -98492014 - Lx3B LINE L1 -3 6970 6611 3 1338 1331 207 294 52 chr1 98703418 98703881 -98491551 - RMER19C LTR ERVK -24 878 226 3 1338 252 284 18 81 chr1 98704299 98704410 -98491022 - RMER1B Other Other -916 150 47 3 1338 203 61 30 0 chr1 98705410 98705443 -98489989 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1338 267 335 105 30 chr1 98705656 98705856 -98489576 + MLT1E2 LTR MaLR 1 215 -412 3 1338 214 222 0 0 chr1 98706421 98706457 -98488975 + PB1D7 SINE Alu 21 56 -64 3 1338 411 212 2 23 chr1 98706773 98706871 -98488561 + MTC LTR MaLR 1 98 -321 3 1338 1452 153 7 39 chr1 98706875 98707154 -98488278 - RMER6A LTR ERVK 0 756 487 3 1338 1437 234 6 55 chr1 98707166 98707260 -98488172 + MTC LTR MaLR 108 202 -219 3 1338 5661 52 1 3 chr1 98707260 98707958 -98487474 + L1Md_F2 LINE L1 5873 6569 -13 3 1338 1437 234 6 55 chr1 98707958 98708193 -98487239 + MTC LTR MaLR 203 421 0 3 1338 504 0 0 0 chr1 98708292 98708348 -98487084 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1338 252 226 12 0 chr1 98708698 98708782 -98486650 - Lx6 LINE L1 -60 7400 7316 3 1338 314 356 43 0 chr1 98709023 98709138 -98486294 + L1MC4 LINE L1 6461 6580 -1302 3 1338 641 146 216 54 chr1 98709332 98709499 -98485933 + B2_Mm2 SINE B2 2 195 0 3 1338 4362 65 2 2 chr1 98709785 98710343 -98485089 - L1_Mus1 LINE L1 0 6567 6010 3 1338 377 309 13 7 chr1 98710462 98710615 -98484817 + L1MC4 LINE L1 7424 7577 -465 3 1338 401 373 26 31 chr1 98710910 98711101 -98484331 + MLT1F1 LTR MaLR 303 492 -77 3 1338 250 200 200 0 chr1 98712244 98712309 -98483123 + ORR1B1 LTR MaLR 274 351 -43 3 1338 1215 266 13 20 chr1 98712327 98712630 -98482802 + MTE2b LTR MaLR 5 305 -74 3 1338 745 207 86 20 chr1 98712633 98712830 -98482602 + B3 SINE B2 1 210 -6 3 1338 341 271 114 50 chr1 98714993 98715133 -98480299 + B1F1 SINE Alu 1 149 0 3 1338 450 0 0 0 chr1 98715690 98715740 -98479692 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 3 1338 203 167 0 0 chr1 98716003 98716045 -98479387 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 1338 461 191 0 9 chr1 98716821 98716932 -98478500 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1338 351 0 0 0 chr1 98716932 98716971 -98478461 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1338 285 341 30 15 chr1 98716991 98717122 -98478310 - B1F1 SINE Alu -12 137 5 3 1338 23 33 0 0 chr1 98718078 98718108 -98477324 + AT_rich Low_complexity Low_complexity 1 30 0 3 1338 482 375 0 42 chr1 98718139 98718306 -98477126 + RSINE1 SINE B4 3 162 -3 3 1338 1321 83 5 10 chr1 98718344 98718538 -98476894 - L1Md_F2 LINE L1 0 6582 6390 3 1338 3343 53 0 7 chr1 98718539 98718977 -98476455 + L1Md_F2 LINE L1 5953 6387 -195 3 1338 1048 96 0 46 chr1 98719014 98719167 -98476265 + B1_Mm SINE Alu 1 146 -1 3 1338 1254 64 81 6 chr1 98719360 98719533 -98475899 + B2_Mm2 SINE B2 1 186 -9 3 1338 1476 263 107 62 chr1 98720740 98721478 -98473954 + L1MA9 LINE L1 4130 4896 -1244 3 1338 1234 124 0 25 chr1 98721478 98721676 -98473756 + B2_Mm2 SINE B2 1 193 -2 3 1338 1476 263 107 62 chr1 98721676 98722150 -98473282 + L1MA9 LINE L1 4897 5397 -743 3 1338 272 246 158 46 chr1 98722366 98722607 -98472825 + L1MA9 LINE L1 5666 5938 -374 3 1338 497 327 13 0 chr1 98722644 98722797 -98472635 + RSINE1 SINE B4 5 159 -6 3 1338 713 54 0 11 chr1 98723480 98723574 -98471858 - B1_Mus2 SINE Alu 0 147 55 3 1338 347 265 23 93 chr1 98723703 98723832 -98471600 + B1F1 SINE Alu 1 120 0 3 1338 7071 26 0 0 chr1 98724040 98724857 -98470575 + L1Md_T LINE L1 5766 6582 0 3 1338 189 147 0 0 chr1 98724863 98724897 -98470535 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1338 370 335 58 0 chr1 98726550 98726705 -98468727 - RSINE1 SINE B4 0 165 2 3 1338 24 53 0 0 chr1 98726868 98726906 -98468526 + AT_rich Low_complexity Low_complexity 1 38 0 3 1338 557 246 144 0 chr1 98726929 98727096 -98468336 + B3 SINE B2 3 193 -23 3 1338 218 191 20 78 chr1 98727325 98727376 -98468056 - B1F2 SINE Alu -93 56 9 3 1338 3184 155 152 17 chr1 98727378 98728042 -98467390 - RMER6A LTR ERVK -2 754 1 3 1338 183 282 49 106 chr1 98729713 98729836 -98465596 - L2c LINE L2 -230 3157 3042 3 1338 483 357 63 12 chr1 98730014 98730243 -98465189 - B4A SINE B4 0 292 54 3 1338 234 243 80 13 chr1 98730677 98730752 -98464680 + RMER30 DNA MER1_type 90 169 -33 3 1338 637 247 20 20 chr1 98731695 98731844 -98463588 - B1_Mur2 SINE Alu 0 149 1 3 1338 309 51 0 0 chr1 98731868 98731907 -98463525 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1338 324 48 0 0 chr1 98734303 98734345 -98461087 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1338 660 71 0 0 chr1 98734346 98734445 -98460987 + (GA)n Simple_repeat Simple_repeat 1 99 0 3 1338 1909 120 89 10 chr1 98734716 98735018 -98460414 - ORR1A2 LTR MaLR -1 326 1 3 1338 618 82 0 0 chr1 98735628 98735713 -98459719 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 1338 228 86 0 0 chr1 98736050 98736085 -98459347 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1338 409 322 72 63 chr1 98736276 98736498 -98458934 + RMER2 LTR ERV1 329 552 -15 3 1338 274 351 58 83 chr1 98736578 98736699 -98458733 + B1F SINE Alu 3 120 0 3 1338 1062 245 9 0 chr1 98738043 98738255 -98457177 + B3 SINE B2 1 214 -2 3 1338 24 0 0 0 chr1 98738447 98738471 -98456961 + AT_rich Low_complexity Low_complexity 1 24 0 3 1338 22 35 0 0 chr1 98738728 98738757 -98456675 + AT_rich Low_complexity Low_complexity 1 29 0 3 1338 182 37 37 0 chr1 98738845 98738872 -98456560 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 1338 279 0 0 0 chr1 98739923 98739954 -98455478 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1338 1140 76 0 0 chr1 98739960 98740105 -98455327 + B1_Mus2 SINE Alu 3 147 0 3 1338 213 146 0 0 chr1 98740106 98740154 -98455278 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1338 3178 104 23 6 chr1 98740178 98740653 -98454779 - Lx3_Mus LINE L1 0 7009 6527 3 1338 540 228 183 21 chr1 98741722 98741907 -98453525 + B3 SINE B2 2 216 0 3 1338 594 103 248 41 chr1 98742461 98742582 -98452850 - B1_Mus2 SINE Alu 0 147 2 3 1338 1414 66 0 0 chr1 98743564 98743747 -98451685 - L1_Mus4 LINE L1 -358 6278 6096 3 1338 565 256 23 32 chr1 98743780 98743998 -98451434 - RMER17C LTR ERVK -135 275 60 3 1338 3411 117 16 91 chr1 98743998 98744677 -98450755 - L1_Mm LINE L1 -112 5771 5144 3 1338 2482 61 15 3 chr1 98744678 98745007 -98450425 + L1_Mus4 LINE L1 6295 6627 -9 3 1338 1132 78 0 0 chr1 98746260 98746414 -98449018 + B2_Mm2 SINE B2 2 155 -40 3 1338 444 19 0 0 chr1 98746414 98746467 -98448965 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1338 653 326 64 47 chr1 98747076 98747311 -98448121 - B4A SINE B4 -14 278 40 3 1338 1038 61 54 0 chr1 98747315 98747463 -98447969 + L1_Mus3 LINE L1 6471 6626 -12 3 1338 21 0 0 0 chr1 98747463 98747484 -98447948 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 240 317 0 0 chr1 98747615 98747675 -98447757 + ID4_ SINE ID 22 81 -2 3 1338 286 366 23 52 chr1 98748261 98748434 -98446998 - MER20 DNA MER1_type -13 206 39 3 1338 400 319 43 17 chr1 98748507 98748622 -98446810 + RSINE1 SINE B4 47 164 -1 3 1338 2721 53 0 0 chr1 98748626 98748964 -98446468 + ORR1A1 LTR MaLR 1 338 -8 3 1338 22 0 0 0 chr1 98749391 98749413 -98446019 + AT_rich Low_complexity Low_complexity 1 22 0 4 1338 425 326 28 17 chr1 98750343 98750524 -98444908 + MER58A DNA MER1_type 41 223 -1 4 1338 180 0 0 0 chr1 98750683 98750703 -98444729 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1338 328 261 107 62 chr1 98751266 98751491 -98443941 + L1MDa LINE L1 6 240 -6393 4 1338 306 0 0 0 chr1 98751919 98751953 -98443479 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1338 212 114 43 43 chr1 98751954 98752000 -98443432 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 4 1338 402 324 224 22 chr1 98752406 98752728 -98442704 + L1MDa LINE L1 4082 4468 -2069 4 1338 281 346 29 14 chr1 98752747 98752885 -98442547 - B1F SINE Alu -9 140 1 4 1338 505 289 70 26 chr1 98752889 98753185 -98442247 + L1MDa LINE L1 4487 4795 -1742 4 1338 195 42 0 0 chr1 98753185 98753209 -98442223 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1338 505 289 70 26 chr1 98753209 98753257 -98442175 + L1MDa LINE L1 4796 4845 -1692 4 1338 1204 263 105 12 chr1 98753289 98753631 -98441801 - MTD LTR MaLR 0 419 46 4 1338 1153 283 83 28 chr1 98753646 98754445 -98440987 + L1M2 LINE L1 4368 5223 -624 4 1338 7065 51 1 6 chr1 98754616 98755500 -98439932 + L1Md_F2 LINE L1 5701 6580 -2 4 1338 410 281 169 0 chr1 98755511 98755789 -98439643 + L1M2 LINE L1 5473 5797 -503 4 1338 419 348 13 0 chr1 98755835 98755990 -98439442 - RSINE1 SINE B4 -6 159 3 4 1338 216 167 0 0 chr1 98757123 98757171 -98438261 + A-rich Low_complexity Low_complexity 1 48 0 4 1338 288 0 0 0 chr1 98757478 98757510 -98437922 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1338 1238 201 139 12 chr1 98757923 98758255 -98437177 + ORR1D1 LTR MaLR 1 374 0 4 1338 1607 245 30 20 chr1 98758716 98759112 -98436320 - Lx5 LINE L1 -5 7045 6646 4 1338 540 248 16 16 chr1 98759359 98759486 -98435946 + B1_Mur3 SINE Alu 1 127 -22 4 1338 249 325 48 0 chr1 98759496 98759579 -98435853 + PB1D7 SINE Alu 2 88 -32 4 1338 3261 45 0 5 chr1 98759661 98760063 -98435369 + L1Md_F2 LINE L1 6170 6569 -13 4 1338 252 0 0 0 chr1 98760533 98760561 -98434871 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1338 471 18 0 0 chr1 98760699 98760755 -98434677 + (TGG)n Simple_repeat Simple_repeat 3 58 0 4 1338 448 275 58 29 chr1 98760757 98760963 -98434469 - ID_B1 SINE B4 -11 213 2 4 1338 347 299 176 31 chr1 98761222 98761415 -98434017 + ID_B1 SINE B4 3 223 -1 4 1338 216 297 16 0 chr1 98762215 98762279 -98433153 + B1_Mur4 SINE Alu 80 144 -6 4 1338 846 188 136 8 chr1 98762317 98762574 -98432858 + Lx9 LINE L1 7355 7644 0 4 1338 719 303 80 0 chr1 98763134 98763309 -98432123 - B3 SINE B2 -13 203 15 4 1338 23 78 0 0 chr1 98763313 98763364 -98432068 + AT_rich Low_complexity Low_complexity 1 51 0 4 1338 535 242 0 8 chr1 98763373 98763494 -98431938 + B3 SINE B2 2 121 -95 4 1338 2924 97 55 7 chr1 98764662 98765100 -98430332 - Lx LINE L1 0 6654 6196 4 1338 246 330 69 20 chr1 98765552 98765654 -98429778 - PB1D7 SINE Alu -9 111 5 4 1338 1159 55 7 14 chr1 98766040 98766187 -98429245 + B1_Mus2 SINE Alu 1 146 -1 4 1338 282 38 19 37 chr1 98766192 98766246 -98429186 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 1338 508 240 132 0 chr1 98766512 98766641 -98428791 + B1_Mur3 SINE Alu 3 148 -1 4 1338 22 0 0 0 chr1 98766658 98766680 -98428752 + AT_rich Low_complexity Low_complexity 1 22 0 4 1338 560 202 0 19 chr1 98770120 98770237 -98425195 + B1_Mur2 SINE Alu 33 138 -11 4 1338 330 125 77 15 chr1 98770707 98770772 -98424660 + ORR1C2 LTR MaLR 316 384 0 4 1338 354 231 0 0 chr1 98770790 98770881 -98424551 + (TATG)n Simple_repeat Simple_repeat 4 94 0 4 1338 1507 205 36 0 chr1 98771262 98771593 -98423839 - Lx9 LINE L1 -223 7421 7079 4 1338 33 25 0 0 chr1 98771618 98771658 -98423774 + AT_rich Low_complexity Low_complexity 1 40 0 4 1338 260 198 11 55 chr1 98771687 98771778 -98423654 + Lx9 LINE L1 7520 7606 -38 4 1338 1229 80 6 33 chr1 98772486 98772667 -98422765 - B2_Mm2 SINE B2 -19 176 1 4 1338 233 146 0 20 chr1 98772930 98772979 -98422453 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 4 1338 205 191 0 0 chr1 98773129 98773171 -98422261 + A-rich Low_complexity Low_complexity 1 42 0 4 1338 198 354 58 76 chr1 98773316 98773487 -98421945 + MIR SINE MIR 67 234 -28 4 1338 1953 123 51 134 chr1 98774181 98774650 -98420782 - RLTR23 LTR ERV1 0 430 1 4 1338 255 273 30 0 chr1 98774663 98774729 -98420703 - MLT1J LTR MaLR -303 209 142 4 1338 228 287 64 24 chr1 98775278 98775292 -98420140 + ID_B1 SINE B4 70 159 -65 4 1338 555 236 0 143 chr1 98775292 98775364 -98420068 + B1_Mur1 SINE Alu 4 55 -94 4 1338 2942 86 10 2 chr1 98775364 98775761 -98419671 - MTB LTR MaLR 0 400 1 4 1338 228 287 64 24 chr1 98775761 98775799 -98419633 + ID_B1 SINE B4 160 198 -26 4 1338 555 236 0 143 chr1 98775799 98775856 -98419576 + B1_Mur1 SINE Alu 56 147 -2 4 1338 547 287 8 30 chr1 98776233 98776366 -98419066 + ID_B1 SINE B4 90 219 -5 4 1338 1964 104 101 0 chr1 98776588 98776885 -98418547 - ORR1A2 LTR MaLR 0 327 1 4 1338 623 330 75 36 chr1 98777001 98777362 -98418070 + MLT2D LTR ERVL 1 375 -39 4 1338 194 397 80 14 chr1 98777399 98777537 -98417895 + L2 LINE L2 2586 2732 -687 4 1338 976 121 113 23 chr1 98777989 98778166 -98417266 + B2_Mm2 SINE B2 3 195 0 4 1338 312 70 0 0 chr1 98778176 98778219 -98417213 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1338 408 266 80 8 chr1 98778224 98778349 -98417083 - RSINE1 SINE B4 -22 143 10 4 1338 323 318 121 0 chr1 98778374 98778547 -98416885 + L1MC4 LINE L1 6976 7169 -873 4 1338 193 390 76 21 chr1 98779076 98779220 -98416212 - MIR SINE MIR -106 156 5 4 1338 493 380 39 53 chr1 98779309 98779667 -98415765 - LTR55 LTR ERV -154 394 42 4 1338 854 163 63 184 chr1 98779788 98780043 -98415389 - URR1B DNA MER1_type 0 225 2 4 1338 424 344 33 13 chr1 98780219 98780372 -98415060 + RSINE1 SINE B4 2 157 -8 4 1338 471 73 0 0 chr1 98781250 98781318 -98414114 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1338 516 268 32 0 chr1 98781323 98781446 -98413986 - RSINE1 SINE B4 -36 129 3 4 1338 389 281 104 9 chr1 98781489 98781604 -98413828 - B1_Mur1 SINE Alu -7 142 17 4 1338 231 140 0 0 chr1 98781698 98781748 -98413684 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1338 305 312 91 73 chr1 98781833 98782065 -98413367 - MLT1D LTR MaLR -214 291 56 4 1338 578 241 68 19 chr1 98782970 98783131 -98412301 + 7SK RNA RNA 1 169 -162 4 1338 3464 80 69 4 chr1 98783133 98783624 -98411808 + MT2B2 LTR ERVL 1 523 -61 4 1338 1588 203 85 30 chr1 98784230 98784595 -98410837 - RLTR41 LTR ERV1 0 446 62 4 1338 252 206 16 16 chr1 98784858 98784922 -98410510 - MuRRS4-int LTR ERV1 -377 4686 4623 4 1338 1581 264 40 15 chr1 98785527 98785996 -98409436 - MuRRS4-int LTR ERV1 -1050 4013 3533 4 1338 453 320 53 19 chr1 98786414 98786760 -98408672 - MuLV-int LTR ERV1 -3234 4367 3997 4 1338 370 298 44 45 chr1 98786792 98787125 -98408307 - MuLV-int LTR ERV1 -5191 2415 2102 4 1338 218 206 37 9 chr1 98787314 98787376 -98408056 + CT-rich Low_complexity Low_complexity 1 63 0 4 1338 415 310 46 25 chr1 98787521 98787737 -98407695 - MuLV-int LTR ERV1 -5911 1645 1452 4 1338 357 102 0 0 chr1 98788131 98788190 -98407242 + (CTTG)n Simple_repeat Simple_repeat 2 60 0 4 1338 318 216 0 0 chr1 98788223 98788318 -98407114 + L1Md_Gf LINE L1 987 1068 -5454 4 1338 243 324 9 9 chr1 98788316 98788422 -98407010 + MurSatRep1 Unknown Unknown 177 282 -1855 4 1338 276 333 112 16 chr1 98789927 98790052 -98405380 - B1F2 SINE Alu 0 149 13 4 1338 23 54 0 0 chr1 98790139 98790176 -98405256 + AT_rich Low_complexity Low_complexity 1 37 0 4 1338 350 218 164 0 chr1 98790200 98790310 -98405122 - B1_Mus2 SINE Alu -19 128 1 4 1338 661 299 86 18 chr1 98790634 98790971 -98404461 - Lx8 LINE L1 -226 7247 6888 4 1338 558 221 62 8 chr1 98791136 98791264 -98404168 + B1_Mur3 SINE Alu 13 147 -2 4 1338 214 312 77 77 chr1 98791137 98791293 -98404139 + B4A SINE B4 99 254 -38 4 1338 4168 75 6 4 chr1 98791655 98792202 -98403230 - L1_Mus1 LINE L1 0 6567 6020 4 1338 3270 59 0 2 chr1 98792202 98792785 -98402647 + L1_Mus1 LINE L1 5429 6010 -557 4 1338 1344 79 17 0 chr1 98792785 98792963 -98402469 - B2_Mm2 SINE B2 -14 181 1 4 1338 222 369 12 12 chr1 98793088 98793173 -98402259 + L2a LINE L2 3311 3395 -31 4 1338 8096 158 27 75 chr1 98793268 98794944 -98400488 - ORR1A2-int LTR MaLR -438 1525 1 4 1338 1924 114 5 131 chr1 98794944 98795019 -98400413 - ORR1A2 LTR MaLR 0 327 281 4 1338 844 81 0 81 chr1 98795019 98795167 -98400265 - L1_Mus1 LINE L1 -1 6566 6431 4 1338 1924 114 5 131 chr1 98795167 98795465 -98399967 - ORR1A2 LTR MaLR -47 280 1 4 1338 201 162 0 0 chr1 98795477 98795514 -98399918 + T-rich Low_complexity Low_complexity 3 39 0 4 1338 254 302 23 0 chr1 98796270 98796356 -98399076 + Tigger1 DNA MER2_type 2249 2336 -82 4 1338 1518 168 64 103 chr1 98796953 98797312 -98398120 + ORR1B1 LTR MaLR 41 385 -9 4 1338 5440 191 82 84 chr1 98798793 98799363 -98396069 + Lx6 LINE L1 4115 4727 -1153 4 1338 240 35 0 0 chr1 98799363 98799392 -98396040 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1338 5440 191 82 84 chr1 98799392 98799453 -98395979 + Lx6 LINE L1 4728 4782 -1098 4 1338 333 0 0 0 chr1 98799453 98799490 -98395942 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1338 1031 117 7 0 chr1 98799490 98799635 -98395797 - B1_Mus1 SINE Alu -2 146 1 4 1338 5440 202 75 75 chr1 98799635 98801587 -98393845 + Lx6 LINE L1 4783 6741 -719 4 1338 498 108 0 0 chr1 98801587 98801661 -98393771 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1338 3968 219 64 64 chr1 98801661 98801750 -98393682 + Lx6 LINE L1 6742 6821 -639 4 1338 459 119 173 8 chr1 98801766 98801893 -98393539 + MYSERV16_I-int LTR ERVK 2178 2325 -1 4 1338 1612 224 91 51 chr1 98801894 98802402 -98393030 + RLTR11A LTR ERVK 1 528 0 4 1338 30 105 0 0 chr1 98802455 98802569 -98392863 + AT_rich Low_complexity Low_complexity 1 114 0 4 1338 328 338 158 0 chr1 98802570 98802703 -98392729 + RSINE1 SINE B4 1 154 -11 4 1338 301 22 43 0 chr1 98803140 98803186 -98392246 + (TTG)n Simple_repeat Simple_repeat 1 48 0 4 1338 1120 81 0 7 chr1 98803201 98803350 -98392082 - B1_Mus1 SINE Alu 0 148 1 4 1338 589 260 6 0 chr1 98804109 98804278 -98391154 + Lx6 LINE L1 102 271 -7457 4 1338 5308 198 25 34 chr1 98804333 98804363 -98391069 + Lx6 LINE L1 4593 4622 -1258 4 1338 207 0 0 0 chr1 98804363 98804386 -98391046 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1338 5308 216 37 27 chr1 98804386 98806432 -98389000 + Lx6 LINE L1 4623 6699 -761 4 1338 1024 46 8 0 chr1 98806448 98806578 -98388854 + B1_Mus1 SINE Alu 18 148 0 5 1338 1511 220 92 8 chr1 98806616 98807278 -98388154 + Lx6 LINE L1 6740 7457 -3 4 1338 466 266 112 43 chr1 98807282 98807443 -98387989 - B2_Mm2 SINE B2 -15 180 9 5 1338 423 0 0 0 chr1 98807456 98807503 -98387929 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1338 584 238 82 0 chr1 98807547 98807669 -98387763 - B1_Mus1 SINE Alu -1 147 16 5 1338 280 351 72 36 chr1 98807548 98807687 -98387745 - B4 SINE B4 -69 223 80 5 1338 354 23 0 0 chr1 98807798 98807841 -98387591 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 5 1338 2673 35 62 0 chr1 98807876 98808214 -98387218 - L1_Mus1 LINE L1 -1 6566 6208 5 1338 222 231 0 0 chr1 98808412 98808464 -98386968 + T-rich Low_complexity Low_complexity 1 52 0 5 1338 22 56 0 0 chr1 98808930 98808966 -98386466 + AT_rich Low_complexity Low_complexity 1 36 0 5 1338 264 375 37 6 chr1 98809610 98809771 -98385661 + MLT-int LTR MaLR 530 695 -1040 5 1338 747 118 22 0 chr1 98809876 98810011 -98385421 + (TC)n Simple_repeat Simple_repeat 1 138 0 5 1338 5993 185 98 14 chr1 98810013 98810279 -98385153 - Lx4B LINE L1 -23 7027 6672 5 1338 423 0 0 0 chr1 98810279 98810326 -98385106 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1338 5993 158 45 4 chr1 98810326 98811992 -98383440 - Lx4B LINE L1 -364 6694 4948 5 1338 436 376 105 62 chr1 98812028 98812686 -98382746 + MTE-int LTR MaLR 840 1525 -55 5 1338 1114 95 0 0 chr1 98812773 98812920 -98382512 + B1_Mus2 SINE Alu 1 147 0 5 1338 781 365 90 20 chr1 98813720 98814277 -98381155 - Tigger7 DNA MER2_type -1863 628 33 5 1338 1047 84 42 0 chr1 98814427 98814569 -98380863 - B1_Mus1 SINE Alu 0 148 1 5 1338 1229 265 101 0 chr1 98814687 98815023 -98380409 + ORR1D2 LTR MaLR 1 370 0 5 1338 691 300 24 10 chr1 98815059 98815268 -98380164 + ORR1D2-int LTR MaLR 82 293 -1077 5 1338 4100 90 16 7 chr1 98815273 98816090 -98379342 + Lx3A LINE L1 5384 6201 -780 5 1338 445 365 44 19 chr1 98816090 98816249 -98379183 + RSINE1 SINE B4 1 163 -2 5 1338 5527 89 9 1 chr1 98816268 98817013 -98378419 + Lx3A LINE L1 6225 6975 -6 5 1338 25 0 0 0 chr1 98817031 98817056 -98378376 + AT_rich Low_complexity Low_complexity 1 25 0 5 1338 1948 315 52 31 chr1 98817089 98817788 -98377644 + ORR1D2-int LTR MaLR 657 1369 -1 5 1338 595 281 102 0 chr1 98817789 98817956 -98377476 + ORR1D2 LTR MaLR 1 184 -186 5 1338 33 56 0 0 chr1 98818142 98818196 -98377236 + AT_rich Low_complexity Low_complexity 1 54 0 5 1338 1807 47 13 4 chr1 98818812 98819049 -98376383 - L1Md_F3 LINE L1 -1 6583 6345 5 1338 893 317 20 107 chr1 98819797 98820461 -98374971 + Lx8 LINE L1 6558 7163 -310 5 1338 23 0 0 0 chr1 98820812 98820835 -98374597 + AT_rich Low_complexity Low_complexity 1 23 0 5 1338 318 283 14 0 chr1 98820978 98821123 -98374309 + (TA)n Simple_repeat Simple_repeat 1 147 0 5 1338 261 220 0 0 chr1 98821551 98821610 -98373822 - L1_Rod LINE L1 -625 5222 5164 5 1338 7228 52 3 1 chr1 98821648 98822594 -98372838 - L1Md_F2 LINE L1 -1 6581 5634 5 1338 21 0 0 0 chr1 98822836 98822857 -98372575 + AT_rich Low_complexity Low_complexity 1 21 0 5 1338 276 341 0 0 chr1 98822942 98823024 -98372408 - PB1D10 SINE Alu 0 117 36 5 1338 250 218 18 35 chr1 98822976 98823033 -98372399 - MT2B LTR ERVL -360 241 186 5 1338 449 344 0 16 chr1 98823405 98823529 -98371903 - RSINE1 SINE B4 -41 124 3 5 1338 329 290 113 22 chr1 98823811 98823911 -98371521 + PB1D10 SINE Alu 15 121 -6 5 1338 5547 54 1 0 chr1 98824282 98825006 -98370426 + L1Md_F2 LINE L1 4862 5586 -297 5 1338 7527 65 21 0 chr1 98825007 98825980 -98369452 + L1Md_F2 LINE L1 5588 6580 -2 5 1338 460 195 388 5 chr1 98826586 98826806 -98368626 - Lx9 LINE L1 -7 7637 7334 5 1338 590 209 0 0 chr1 98826807 98826912 -98368520 - PB1D9 SINE Alu -13 107 3 5 1338 1153 137 21 0 chr1 98827316 98827506 -98367926 - B2_Mm2 SINE B2 -1 194 1 5 1338 432 0 0 0 chr1 98827574 98827622 -98367810 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 167 6828 114 17 9 chr1 98827785 98829255 -98366177 + L1_Mus4 LINE L1 5156 6636 0 5 1339 235 372 128 42 chr1 98829292 98829674 -98365758 - L2a LINE L2 -2 3424 3010 5 1339 203 79 0 26 chr1 98829710 98829749 -98365683 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1339 289 308 167 29 chr1 98830153 98830327 -98365105 - MER34A LTR ERV1 -373 198 1 5 1339 35 83 0 0 chr1 98830571 98830655 -98364777 + AT_rich Low_complexity Low_complexity 1 84 0 5 1339 311 348 108 5 chr1 98830739 98830924 -98364508 + L1M5 LINE L1 2290 2493 -3653 5 1339 1969 174 261 11 chr1 98831184 98831450 -98363982 + RMER6C LTR ERVK 1 372 -318 5 1339 396 59 0 0 chr1 98831450 98831501 -98363931 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1339 1969 174 261 11 chr1 98831501 98831786 -98363646 + RMER6C LTR ERVK 373 690 0 5 1339 347 289 112 31 chr1 98831797 98831958 -98363474 + L1MEg LINE L1 827 1000 -5084 5 1339 319 389 87 8 chr1 98832097 98832338 -98363094 + MLT1E3 LTR MaLR 155 414 -210 5 1339 4956 214 28 47 chr1 98833202 98833595 -98361837 + Lx7 LINE L1 5507 5785 -1911 5 1339 1158 64 23 6 chr1 98833595 98833767 -98361665 + (GGAGAA)n Simple_repeat Simple_repeat 1 175 0 5 1339 4956 232 94 88 chr1 98833767 98835164 -98360268 + Lx7 LINE L1 5786 7310 -386 5 1339 279 259 35 23 chr1 98835174 98835261 -98360171 + (TCTG)n Simple_repeat Simple_repeat 1 88 0 5 1339 189 0 0 0 chr1 98835281 98835302 -98360130 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1339 819 80 16 15 chr1 98835358 98835522 -98359910 + L1Md_F2 LINE L1 6442 6623 -15 5 1339 397 267 48 38 chr1 98835550 98835629 -98359803 + Lx7 LINE L1 7478 7560 -136 5 1339 357 24 0 0 chr1 98835629 98835671 -98359761 + (TTA)n Simple_repeat Simple_repeat 3 44 0 5 1339 397 273 43 37 chr1 98835671 98835823 -98359609 + Lx7 LINE L1 7561 7689 -7 5 1339 504 281 68 14 chr1 98835955 98836103 -98359329 + B4A SINE B4 111 266 -26 5 1339 324 0 0 0 chr1 98836106 98836142 -98359290 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1339 737 298 31 13 chr1 98837398 98837626 -98357806 + B4 SINE B4 42 273 -19 5 1339 681 274 25 0 chr1 98838779 98838980 -98356452 + B3 SINE B2 5 210 -6 5 1339 1078 79 12 12 chr1 98839145 98839312 -98356120 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 5 1339 728 161 6 24 chr1 98839338 98839426 -98356006 + polypyrimidine Low_complexity Low_complexity 81 165 0 5 1339 1379 45 6 0 chr1 98839426 98839605 -98355827 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1339 728 161 6 24 chr1 98839605 98839681 -98355751 + polypyrimidine Low_complexity Low_complexity 4 80 0 5 1339 278 330 0 11 chr1 98839681 98839770 -98355662 + CT-rich Low_complexity Low_complexity 3 90 0 5 1339 255 255 0 0 chr1 98839790 98839841 -98355591 - B1F SINE Alu -51 98 48 5 1339 215 98 0 68 chr1 98840028 98840072 -98355360 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1339 226 371 36 18 chr1 98840120 98840345 -98355087 - L1MA4 LINE L1 -109 6191 5963 5 1339 3654 115 21 41 chr1 98840389 98840996 -98354436 - Lx LINE L1 -1 6653 6059 5 1339 2646 35 28 0 chr1 98841018 98841336 -98354096 + IAPLTR2b LTR ERVK 1 327 0 5 1339 234 261 33 50 chr1 98841526 98841647 -98353785 - L1M3 LINE L1 -2820 3320 3202 5 1339 384 235 154 88 chr1 98841672 98841854 -98353578 + B3A SINE B2 1 194 -4 5 1339 223 326 218 7 chr1 98842062 98842204 -98353228 + MER5A DNA MER1_type 12 183 -6 5 1339 1159 75 0 0 chr1 98842319 98842466 -98352966 - B1_Mus2 SINE Alu 0 147 1 5 1339 246 105 0 0 chr1 98842825 98842863 -98352569 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1339 21 0 0 0 chr1 98843618 98843639 -98351793 + AT_rich Low_complexity Low_complexity 1 21 0 5 1339 198 71 0 0 chr1 98843867 98843895 -98351537 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1339 495 33 0 0 chr1 98844398 98844459 -98350973 + (CATA)n Simple_repeat Simple_repeat 2 62 0 5 1339 423 0 0 0 chr1 98846319 98846366 -98349066 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 1339 22 0 0 0 chr1 98846488 98846510 -98348922 + AT_rich Low_complexity Low_complexity 1 22 0 5 1339 2123 202 17 10 chr1 98846960 98847365 -98348067 - Lx2A1 LINE L1 0 7008 6601 5 1339 1729 84 4 0 chr1 98847435 98847674 -98347758 - L1_Mus2 LINE L1 0 6566 6327 5 1339 4408 35 0 0 chr1 98848473 98848991 -98346441 + L1Md_T LINE L1 6065 6582 0 5 1339 23 33 0 0 chr1 98849921 98849951 -98345481 + AT_rich Low_complexity Low_complexity 1 30 0 5 1339 3809 189 57 0 chr1 98849955 98850739 -98344693 - Lx3C LINE L1 -2 6974 6146 5 1339 313 70 35 0 chr1 98850990 98851047 -98344385 + (TTTTTG)n Simple_repeat Simple_repeat 1 59 0 5 1339 1490 168 6 107 chr1 98851058 98851424 -98344008 + ORR1A4 LTR MaLR 1 329 0 5 1339 346 311 107 51 chr1 98851868 98852530 -98342902 + L1M2 LINE L1 4460 5158 -985 5 1339 219 36 0 0 chr1 98852757 98852785 -98342647 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1339 377 319 84 11 chr1 98852785 98852975 -98342457 + L1M2 LINE L1 5169 5372 -771 5 1339 1795 154 25 3 chr1 98853021 98853347 -98342085 + L1_Mur2 LINE L1 4966 5298 -579 5 1339 553 95 0 0 chr1 98853344 98853418 -98342014 - L1_Mm LINE L1 -920 4963 4890 5 1339 4200 56 2 20 chr1 98853416 98853963 -98341469 + L1Md_F2 LINE L1 6023 6559 -23 5 1339 3538 128 9 0 chr1 98853956 98854645 -98340787 + Lx LINE L1 5275 5975 -679 5 1339 472 200 123 0 chr1 98854642 98854688 -98340744 + L1_Mus4 LINE L1 6491 6536 -100 5 1339 207 0 0 0 chr1 98854688 98854711 -98340721 + (AGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 1339 472 200 123 0 chr1 98854711 98854794 -98340638 + L1_Mus4 LINE L1 6537 6634 -2 5 1339 633 112 0 0 chr1 98854794 98854885 -98340547 + (GGA)n Simple_repeat Simple_repeat 2 92 0 5 1339 1372 37 0 9 chr1 98854895 98855113 -98340319 + (GAA)n Simple_repeat Simple_repeat 1 215 0 5 1339 3688 129 56 5 chr1 98855113 98855607 -98339825 + Lx LINE L1 6008 6517 -137 5 1339 189 0 0 0 chr1 98855607 98855628 -98339804 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 5 1339 3688 129 56 5 chr1 98855628 98855743 -98339689 + Lx LINE L1 6518 6648 -6 5 1339 633 112 0 0 chr1 98855743 98855749 -98339683 + (GGA)n Simple_repeat Simple_repeat 3 8 0 5 1339 327 328 60 121 chr1 98855819 98856100 -98339332 + ORR1D2 LTR MaLR 49 312 -58 6 1339 350 190 0 0 chr1 98856272 98856330 -98339102 + Lx4A LINE L1 6285 6342 -716 6 1339 324 238 12 0 chr1 98856419 98856499 -98338933 - Lx9 LINE L1 -261 7383 7303 6 1339 2227 67 10 13 chr1 98856701 98857004 -98338428 + L1_Mus2 LINE L1 6265 6566 0 6 1339 41 21 0 0 chr1 98857597 98857645 -98337787 + AT_rich Low_complexity Low_complexity 1 48 0 6 1339 281 250 0 26 chr1 98858593 98858671 -98336761 - L1P5 LINE L1 -673 5483 5408 6 1339 261 320 0 0 chr1 98858951 98859026 -98336406 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 6 1339 798 288 87 28 chr1 98859191 98859557 -98335875 - RLTR18 LTR ERVK -4 612 120 6 1339 1060 108 13 6 chr1 98859729 98859888 -98335544 + B2_Mm2 SINE B2 2 161 -34 6 1339 639 245 54 24 chr1 98859904 98860071 -98335361 - RLTR18 LTR ERVK -444 172 1 6 1339 376 276 34 8 chr1 98860072 98860189 -98335243 - L1M2 LINE L1 -509 5788 5669 6 1339 1522 227 168 11 chr1 98860203 98860644 -98334788 + RLTR12A LTR ERVK 1 510 -58 6 1339 291 300 12 19 chr1 98860778 98860868 -98334564 - B3A SINE B2 -128 88 1 6 1339 320 273 63 55 chr1 98860869 98861114 -98334318 - L1M2 LINE L1 -705 5607 5366 6 1339 709 246 44 85 chr1 98861279 98861550 -98333882 + MT2B LTR ERVL 342 601 0 6 1339 22 35 0 0 chr1 98862535 98862564 -98332868 + AT_rich Low_complexity Low_complexity 1 29 0 6 1339 518 281 91 62 chr1 98862596 98862805 -98332627 - B3 SINE B2 0 216 2 6 1339 3327 46 10 0 chr1 98862947 98863364 -98332068 + L1Md_F2 LINE L1 5623 6043 -539 6 1339 2035 156 27 101 chr1 98863388 98863901 -98331531 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1339 6222 32 3 19 chr1 98863901 98864659 -98330773 - IAPEz-int LTR ERVK 0 6481 5736 6 1339 2176 79 0 0 chr1 98864658 98864936 -98330496 - IAPEz-int LTR ERVK -4845 1636 1359 6 1339 3485 72 4 21 chr1 98864936 98865592 -98329840 - IAPEz-int LTR ERVK -5819 662 94 6 1339 227 267 0 0 chr1 98865595 98865640 -98329792 - RLTR27 LTR ERVK -34 275 231 6 1339 496 123 47 70 chr1 98865640 98865798 -98329634 - IAPEz-int LTR ERVK -6358 123 3 6 1339 1834 138 18 189 chr1 98865824 98866397 -98329035 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1339 4346 53 2 4 chr1 98866397 98866943 -98328489 + L1Md_F2 LINE L1 6038 6582 0 6 1339 373 306 34 139 chr1 98867254 98867545 -98327887 + L1_Mur3 LINE L1 4045 4321 -1819 6 1339 1185 147 18 0 chr1 98867545 98867763 -98327669 + Lx3B LINE L1 6749 6970 -3 6 1339 373 308 35 132 chr1 98867763 98868242 -98327190 + L1_Mur3 LINE L1 4322 4714 -1163 6 1339 3056 187 22 6 chr1 98868258 98868942 -98326490 - L1_Mur3 LINE L1 -3912 1968 1274 6 1339 3977 199 16 23 chr1 98868942 98869301 -98326131 + Lx5 LINE L1 2480 2838 -3039 6 1339 1132 51 0 0 chr1 98869301 98869439 -98325993 + B1_Mus1 SINE Alu 1 138 -10 6 1339 3977 199 16 23 chr1 98869439 98869855 -98325577 + Lx5 LINE L1 2839 3266 -2611 6 1339 1164 87 26 32 chr1 98869855 98870045 -98325387 + B2_Mm2 SINE B2 1 189 -6 6 1339 3977 199 16 23 chr1 98870045 98870195 -98325237 + Lx5 LINE L1 3267 3400 -2477 6 1339 6181 197 47 25 chr1 98870218 98872514 -98322918 + Lx5 LINE L1 4694 7050 0 6 1339 599 276 70 5 chr1 98872506 98872733 -98322699 + L1_Mur3 LINE L1 4711 4945 -938 6 1339 29392 58 7 1 chr1 98872807 98876614 -98318818 + L1Md_F2 LINE L1 1756 5586 -297 6 1339 8003 45 3 3 chr1 98876615 98877597 -98317835 + L1Md_F2 LINE L1 5588 6569 -13 6 1339 2614 301 59 29 chr1 98877601 98878657 -98316775 + Lx7 LINE L1 5781 6867 -829 6 1339 30597 44 6 10 chr1 98878788 98883583 -98311849 - L1Md_A LINE L1 0 6997 2259 6 1339 548 283 11 86 chr1 98883574 98883841 -98311591 + Lx7 LINE L1 7177 7423 -273 6 1339 526 167 16 48 chr1 98884113 98884239 -98311193 - Lx4A LINE L1 -1 7057 6936 6 1339 212 169 48 48 chr1 98884600 98884662 -98310770 + GA-rich Low_complexity Low_complexity 5 66 0 6 1339 279 316 40 64 chr1 98885810 98885935 -98309497 + ORR1E LTR MaLR 3 124 -235 6 1339 611 193 12 105 chr1 98886191 98886353 -98309079 + B1_Mus1 SINE Alu 1 147 -1 6 1339 452 68 14 0 chr1 98886853 98886926 -98308506 + (TTG)n Simple_repeat Simple_repeat 2 75 0 6 1339 871 157 6 6 chr1 98886942 98887122 -98308310 + CT-rich Low_complexity Low_complexity 1 180 0 6 1339 381 149 0 0 chr1 98887167 98887234 -98308198 + (TTCTCC)n Simple_repeat Simple_repeat 6 72 0 6 1339 2699 124 28 31 chr1 98887630 98887946 -98307486 - Lx LINE L1 0 6654 6339 6 1339 270 0 0 0 chr1 98887946 98887976 -98307456 + (TGG)n Simple_repeat Simple_repeat 2 31 0 6 1339 2699 124 28 31 chr1 98887976 98888117 -98307315 - Lx LINE L1 -316 6338 6198 6 1339 608 270 44 15 chr1 98888972 98889175 -98306257 + B3 SINE B2 1 209 -7 6 1339 37 23 0 0 chr1 98889318 98889362 -98306070 + AT_rich Low_complexity Low_complexity 1 44 0 6 1339 2886 26 18 0 chr1 98889983 98890323 -98305109 - ORR1A0 LTR MaLR 0 346 1 6 1339 346 20 39 0 chr1 98890852 98890903 -98304529 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1339 496 27 120 0 chr1 98890995 98891070 -98304362 + L1_Mus1 LINE L1 6483 6566 -1 6 1339 25 51 0 0 chr1 98891280 98891319 -98304113 + AT_rich Low_complexity Low_complexity 1 39 0 6 1339 180 111 0 0 chr1 98891319 98891346 -98304086 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1339 227 345 103 0 chr1 98891353 98891440 -98303992 - B3A SINE B2 -48 150 55 6 1339 22 35 0 0 chr1 98892056 98892085 -98303347 + AT_rich Low_complexity Low_complexity 1 29 0 6 1339 29 60 0 0 chr1 98893127 98893177 -98302255 + AT_rich Low_complexity Low_complexity 1 50 0 6 1339 312 273 147 8 chr1 98894462 98894591 -98300841 + L1MEg LINE L1 1807 1953 -4131 6 1339 520 134 0 35 chr1 98894602 98894687 -98300745 + B1_Mus2 SINE Alu 54 135 -12 6 1339 488 30 0 15 chr1 98894687 98894754 -98300678 + (CAAAA)n Simple_repeat Simple_repeat 5 70 0 6 1339 3996 165 37 17 chr1 98896306 98897316 -98298116 - Lx5 LINE L1 -938 6112 5062 6 1339 294 36 35 35 chr1 98897601 98897658 -98297774 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 6 1339 363 23 0 0 chr1 98897949 98897993 -98297439 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1339 230 253 64 32 chr1 98899856 98899950 -98295482 + MLT1A0 LTR MaLR 265 361 -4 6 1339 258 331 117 12 chr1 98900165 98900327 -98295105 + LTR33A_ LTR ERVL 330 508 -23 6 1339 861 333 27 16 chr1 98900829 98901085 -98294347 + B4A SINE B4 1 259 -33 6 1339 269 332 129 61 chr1 98901277 98901556 -98293876 - L2c LINE L2 -97 3290 2993 6 1339 267 133 0 0 chr1 98901704 98901749 -98293683 + (TAA)n Simple_repeat Simple_repeat 2 46 0 6 1339 1625 255 221 9 chr1 98902220 98902679 -98292753 - Lx6 LINE L1 0 7460 6910 6 1339 441 0 0 0 chr1 98902679 98902728 -98292704 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1339 1625 244 60 4 chr1 98902728 98903090 -98292342 - Lx6 LINE L1 -551 6909 6522 6 1339 4038 44 6 2 chr1 98903094 98903596 -98291836 - L1Md_F2 LINE L1 -12 6570 6067 6 1339 24684 90 34 7 chr1 98903596 98907835 -98287597 - L1Md_F2 LINE L1 -1103 4780 217 6 1339 1488 250 11 17 chr1 98907824 98908174 -98287258 - Lx6 LINE L1 -929 6531 6184 6 1339 240 35 0 0 chr1 98908352 98908381 -98287051 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1339 2321 177 7 17 chr1 98909849 98910252 -98285180 - MTB_Mm LTR MaLR -8 399 1 6 1339 1500 226 29 13 chr1 98910255 98910339 -98285093 + MTC LTR MaLR 104 187 -234 6 1339 2760 150 75 22 chr1 98910339 98910872 -98284560 - RLTR31_Mm LTR ERVK 0 561 1 6 1339 1500 226 29 13 chr1 98910872 98911100 -98284332 + MTC LTR MaLR 188 420 -1 6 1339 315 177 0 0 chr1 98911222 98911284 -98284148 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1339 246 62 0 0 chr1 98911893 98911925 -98283507 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1339 25 0 0 0 chr1 98912758 98912783 -98282649 + AT_rich Low_complexity Low_complexity 1 25 0 6 1339 334 207 16 49 chr1 98913338 98913474 -98281958 + GA-rich Low_complexity Low_complexity 1 130 0 6 1339 975 129 6 11 chr1 98913474 98913654 -98281778 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1339 334 207 16 49 chr1 98913654 98913700 -98281732 + polypurine Low_complexity Low_complexity 131 177 0 6 1339 750 221 7 0 chr1 98913839 98913979 -98281453 - B1_Mur1 SINE Alu 0 149 9 6 1339 327 282 87 48 chr1 98914250 98914481 -98280951 - L1_Rod LINE L1 -6369 803 564 6 1339 3152 70 0 0 chr1 98915115 98915515 -98279917 + L1_Mus1 LINE L1 6168 6567 0 6 1339 390 21 0 0 chr1 98917572 98917619 -98277813 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1339 184 305 79 59 chr1 98917744 98917845 -98277587 + L2a LINE L2 3301 3403 -23 6 1339 204 158 0 26 chr1 98918364 98918403 -98277029 + A-rich Low_complexity Low_complexity 2 39 0 6 1339 1056 146 0 0 chr1 98918403 98918581 -98276851 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 6 1339 459 0 0 0 chr1 98918583 98918634 -98276798 + (GGAAA)n Simple_repeat Simple_repeat 1 51 0 6 1339 1221 122 16 5 chr1 98918639 98918829 -98276603 + B2_Mm2 SINE B2 3 194 -1 6 1339 598 259 17 22 chr1 98918835 98919013 -98276419 + MusHAL1 LINE L1 101 277 -6058 6 1339 8920 100 7 7 chr1 98918992 98920499 -98274933 + MusHAL1 LINE L1 683 2259 -1356 6 1339 2346 142 0 85 chr1 98920491 98920975 -98274457 + L1_Mm LINE L1 3283 3725 -2158 6 1339 325 64 0 0 chr1 98923128 98923175 -98272257 + L1_Mm LINE L1 3713 3759 -2124 6 1339 405 0 0 0 chr1 98923377 98923422 -98272010 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 6 1339 9963 122 23 1 chr1 98923422 98924754 -98270678 + L1_Mm LINE L1 3748 5109 -774 6 1339 5064 63 62 6 chr1 98924754 98925445 -98269987 + L1Md_F2 LINE L1 5851 6580 -2 6 1339 9963 122 23 1 chr1 98925445 98925691 -98269741 + L1_Mm LINE L1 5110 5360 -523 6 1339 528 111 0 0 chr1 98925691 98925781 -98269651 + L1_Mus3 LINE L1 6548 6637 -1 6 1339 988 116 0 0 chr1 98925812 98925950 -98269482 + B1_Mus2 SINE Alu 1 138 -9 6 1339 186 115 58 0 chr1 98925964 98926016 -98269416 + A-rich Low_complexity Low_complexity 2 56 0 6 1339 354 98 0 0 chr1 98926524 98926575 -98268857 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1339 1986 227 8 115 chr1 98926655 98927292 -98268140 + RMER4B LTR ERVK 17 585 0 6 1339 419 291 79 139 chr1 98927292 98927557 -98267875 - B4A SINE B4 -42 250 2 6 1339 6060 162 27 17 chr1 98927713 98928816 -98266616 - Lx4A LINE L1 -8 7050 5937 6 1339 427 261 122 31 chr1 98928867 98929096 -98266336 + L1ME2 LINE L1 5662 5911 -253 6 1339 967 258 161 25 chr1 98929247 98929611 -98265821 + MTD LTR MaLR 1 398 -21 6 1339 1331 229 33 7 chr1 98930341 98930648 -98264784 + Lx9 LINE L1 7155 7469 -175 6 1339 270 81 0 0 chr1 98930909 98930946 -98264486 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1339 395 267 60 0 chr1 98930972 98931080 -98264352 + B1_Mur4 SINE Alu 23 137 -13 6 1339 308 64 21 0 chr1 98931080 98931127 -98264305 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1339 3459 202 25 33 chr1 98931463 98932203 -98263229 + RMER1B Other Other 1 1057 -9 6 1339 288 0 0 0 chr1 98932203 98932235 -98263197 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1339 350 265 20 30 chr1 98932243 98932344 -98263088 + RSINE1 SINE B4 3 102 -63 7 1339 268 372 73 0 chr1 98932481 98932618 -98262814 + L2a LINE L2 3267 3413 -13 7 1339 6579 36 2 7 chr1 98933167 98934046 -98261386 - L1Md_F2 LINE L1 -209 6373 5499 7 1339 1443 101 0 18 chr1 98934046 98934269 -98261163 + L1Md_F2 LINE L1 6352 6570 -12 7 1339 743 50 0 0 chr1 98934269 98934370 -98261062 + L1_Mus1 LINE L1 6465 6565 -2 7 1339 276 30 0 0 chr1 98935467 98935500 -98259932 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1339 434 221 73 26 chr1 98936239 98936430 -98259002 + L1_Rod LINE L1 490 689 -6483 7 1339 8497 197 31 21 chr1 98936619 98937500 -98257932 + L1_Mur2 LINE L1 832 1730 -4147 7 1339 501 17 0 0 chr1 98937500 98937558 -98257874 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1339 8497 192 38 11 chr1 98937558 98937869 -98257563 + L1_Mur2 LINE L1 1731 2059 -3818 7 1339 222 128 0 0 chr1 98937869 98937908 -98257524 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1339 8497 192 38 11 chr1 98937908 98939005 -98256427 + L1_Mur2 LINE L1 2060 3167 -2710 7 1339 2433 193 119 11 chr1 98939002 98939532 -98255900 + Lx4B LINE L1 6469 7055 -3 7 1339 528 213 156 0 chr1 98939878 98940000 -98255432 + B1_Mur1 SINE Alu 9 149 0 7 1339 287 234 0 38 chr1 98940130 98940210 -98255222 + CT-rich Low_complexity Low_complexity 1 77 0 7 1339 1133 208 100 23 chr1 98940211 98940472 -98254960 + ORR1C2 LTR MaLR 103 383 -1 7 1339 228 67 0 0 chr1 98941154 98941184 -98254248 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1339 2963 63 27 2 chr1 98941334 98941745 -98253687 - BGLII LTR ERVK 0 421 1 7 1339 516 218 27 90 chr1 98941976 98942198 -98253234 - Lx7 LINE L1 -191 7505 7298 7 1339 335 86 52 0 chr1 98942198 98942256 -98253176 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 7 1339 581 221 52 0 chr1 98942266 98942402 -98253030 - Lx7 LINE L1 -391 7305 7163 7 1339 27 49 0 0 chr1 98942474 98942515 -98252917 + AT_rich Low_complexity Low_complexity 1 41 0 7 1339 5681 140 36 2 chr1 98942689 98943730 -98251702 - Lx LINE L1 -728 5926 4866 7 1339 294 115 19 19 chr1 98943752 98943805 -98251627 - MERVL_2A-int LTR ERVL -5273 488 436 7 1339 41 0 0 0 chr1 98943809 98943850 -98251582 + AT_rich Low_complexity Low_complexity 1 41 0 7 1339 414 53 0 0 chr1 98943881 98943938 -98251494 + (CAAAC)n Simple_repeat Simple_repeat 3 59 0 7 1339 705 215 38 8 chr1 98943939 98944151 -98251281 - MT2B LTR ERVL -241 360 1 7 1339 248 257 62 35 chr1 98944059 98944172 -98251260 - ORR1A3-int LTR MaLR -1258 705 590 7 1339 3451 252 49 93 chr1 98944173 98944388 -98251044 - Lx7 LINE L1 -1691 6005 5791 7 1339 2372 54 3 0 chr1 98944388 98944683 -98250749 - L1Md_T LINE L1 -2 6580 6285 7 1339 4991 228 93 43 chr1 98944683 98945517 -98249915 - Lx7 LINE L1 -92 5794 4845 7 1339 180 0 0 0 chr1 98945517 98945537 -98249895 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1339 4991 184 56 36 chr1 98945537 98946371 -98249061 - Lx7 LINE L1 -1036 4844 3984 7 1339 1317 201 4 0 chr1 98946374 98946628 -98248804 + Lx7 LINE L1 6651 6905 -791 7 1339 372 43 0 0 chr1 98946628 98946674 -98248758 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1339 210 143 0 0 chr1 98946666 98946701 -98248731 + (GGA)n Simple_repeat Simple_repeat 2 36 0 7 1339 1048 256 17 4 chr1 98946701 98946940 -98248492 + Lx7 LINE L1 6910 7151 -545 7 1339 3513 142 81 2 chr1 98947234 98947932 -98247500 - L1Md_F LINE L1 -5399 1325 573 7 1339 2123 201 117 24 chr1 98947997 98948757 -98246675 + RMER19B LTR ERVK 9 902 0 7 1339 12806 131 122 14 chr1 98948998 98949585 -98245847 + L1_Mus3 LINE L1 3311 3891 -1992 7 1339 468 0 0 0 chr1 98949585 98949637 -98245795 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1339 12806 131 122 14 chr1 98949637 98950377 -98245055 + L1_Mus3 LINE L1 3892 4874 -1009 7 1339 1128 133 10 21 chr1 98950377 98950569 -98244863 - B2_Mm2 SINE B2 -4 191 2 7 1339 12806 110 57 8 chr1 98950569 98952316 -98243116 + L1_Mus3 LINE L1 4875 6635 -3 7 1339 261 0 0 0 chr1 98952422 98952451 -98242981 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1339 63 62 0 0 chr1 98952456 98952568 -98242864 + AT_rich Low_complexity Low_complexity 1 112 0 7 1339 7909 73 12 4 chr1 98952771 98954080 -98241352 - L1Md_F2 LINE L1 -1 6581 5280 7 1339 1497 334 49 42 chr1 98954076 98954772 -98240660 - Lx5 LINE L1 0 7050 6350 7 1339 573 223 8 0 chr1 98954768 98954889 -98240543 + L1_Mur3 LINE L1 5575 5696 -184 7 1339 3265 51 2 0 chr1 98955191 98955586 -98239846 - MTA_Mm LTR MaLR 0 396 1 7 1339 266 389 9 0 chr1 98955715 98955828 -98239604 + RSINE1 SINE B4 3 116 -49 7 1339 638 57 0 4 chr1 98955866 98955961 -98239471 + L1_Mus1 LINE L1 5819 5911 -725 7 1339 210 306 48 0 chr1 98956939 98957001 -98238431 + RSINE1 SINE B4 2 66 -99 7 1339 24 53 0 0 chr1 98957077 98957115 -98238317 + AT_rich Low_complexity Low_complexity 1 38 0 7 1339 258 250 0 0 chr1 98957201 98957305 -98238127 + (CA)n Simple_repeat Simple_repeat 2 105 0 7 1339 3502 82 6 0 chr1 98957588 98958062 -98237370 + L1_Mus3 LINE L1 6157 6633 -5 7 1339 25 31 0 0 chr1 98958076 98958108 -98237324 + AT_rich Low_complexity Low_complexity 1 32 0 7 1339 414 256 108 45 chr1 98958129 98958305 -98237127 + B2_Mm2 SINE B2 1 187 -8 7 1339 1110 160 66 5 chr1 98958350 98958563 -98236869 - Lx LINE L1 -8 6646 6421 7 1339 385 238 124 19 chr1 98958567 98958743 -98236689 + Lx6 LINE L1 7317 7451 -9 7 1340 218 95 0 23 chr1 98960193 98960236 -98235196 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1340 658 24 0 0 chr1 98960241 98960326 -98235106 - L1Md_T LINE L1 0 6582 6498 7 1340 7406 188 21 9 chr1 98960525 98962172 -98233260 - Lx2B LINE L1 -2 6998 5334 7 1340 544 129 12 0 chr1 98962172 98962257 -98233175 - ORR1B1 LTR MaLR -308 86 1 7 1340 22 35 0 0 chr1 98962269 98962298 -98233134 + AT_rich Low_complexity Low_complexity 1 29 0 7 1340 534 31 0 0 chr1 98962813 98962877 -98232555 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1340 6181 80 1 0 chr1 98962922 98963746 -98231686 - Lx2B LINE L1 -689 5194 4370 7 1340 662 276 111 15 chr1 98964702 98964963 -98230469 - L1_Rod LINE L1 -27 5820 5535 7 1340 546 266 78 68 chr1 98965004 98965210 -98230222 + Lx8 LINE L1 6258 6465 -1008 7 1340 35 63 0 0 chr1 98966586 98966649 -98228783 + AT_rich Low_complexity Low_complexity 1 63 0 7 1340 196 212 15 15 chr1 98967638 98967705 -98227727 + CT-rich Low_complexity Low_complexity 6 72 0 7 1340 483 74 24 12 chr1 98967790 98967811 -98227621 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 1340 195 42 0 0 chr1 98967811 98967835 -98227597 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1340 483 74 24 12 chr1 98967835 98967895 -98227537 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1340 211 340 73 21 chr1 98967929 98967946 -98227486 - B3 SINE B2 -114 102 2 7 1340 281 346 38 13 chr1 98967946 98968025 -98227407 - RSINE1 SINE B4 -82 83 3 7 1340 290 258 33 33 chr1 98968297 98968389 -98227043 + PB1D10 SINE Alu 24 115 -2 7 1340 237 24 47 23 chr1 98968418 98968461 -98226971 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1340 342 45 0 0 chr1 98969825 98969869 -98225563 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1340 476 175 97 32 chr1 98969872 98969981 -98225451 - Lx9 LINE L1 -180 7464 7347 7 1340 426 85 0 0 chr1 98969981 98970040 -98225392 + (CTG)n Simple_repeat Simple_repeat 1 59 0 7 1340 476 175 97 32 chr1 98970040 98970054 -98225378 - Lx9 LINE L1 -298 7346 7333 7 1340 1058 94 21 37 chr1 98970069 98970257 -98225175 + L1_Mus3 LINE L1 6454 6638 0 7 1340 26 0 0 0 chr1 98970257 98970283 -98225149 + AT_rich Low_complexity Low_complexity 1 26 0 7 1340 366 261 33 0 chr1 98970286 98970376 -98225056 - PB1D9 SINE Alu -48 101 1 7 1340 522 31 0 0 chr1 98970828 98970892 -98224540 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1340 238 104 61 20 chr1 98970905 98970954 -98224478 + L1_Mur3 LINE L1 3426 3476 -2404 7 1340 417 39 0 0 chr1 98970954 98971005 -98224427 + (TAAAA)n Simple_repeat Simple_repeat 4 54 0 7 1340 656 271 84 38 chr1 98971095 98971356 -98224076 + B4 SINE B4 1 273 -19 7 1340 522 129 0 0 chr1 98971539 98971624 -98223808 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 7 1340 955 140 12 0 chr1 98971630 98971801 -98223631 + GA-rich Low_complexity Low_complexity 1 173 0 7 1340 396 0 0 0 chr1 98971954 98971998 -98223434 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1340 6395 29 14 0 chr1 98972724 98973492 -98221940 + L1Md_F3 LINE L1 5805 6583 -1 7 1340 717 296 6 0 chr1 98973493 98973662 -98221770 + B3 SINE B2 32 201 -15 7 1340 617 316 26 5 chr1 98974036 98974230 -98221202 - B3 SINE B2 -15 201 4 7 1340 604 286 90 103 chr1 98974282 98974905 -98220527 + RLTR18 LTR ERVK 1 615 -1 7 1340 435 19 0 0 chr1 98975189 98975241 -98220191 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 7 1340 4873 78 36 8 chr1 98975241 98975910 -98219522 - L1Md_F2 LINE L1 -136 6446 5759 7 1340 600 73 0 0 chr1 98975910 98975992 -98219440 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 7 1340 187 103 25 25 chr1 98976231 98976271 -98219161 + T-rich Low_complexity Low_complexity 2 41 0 7 1340 452 288 21 28 chr1 98976423 98976566 -98218866 + RLTR18-int LTR ERVK 2529 2670 -2691 7 1340 513 264 39 0 chr1 98976573 98976702 -98218730 + RLTR18-int LTR ERVK 2804 2937 -2424 7 1340 428 296 25 25 chr1 98976936 98977054 -98218378 + RLTR18 LTR ERVK 499 616 0 7 1340 467 293 30 0 chr1 98977299 98977432 -98218000 + B1_Mur3 SINE Alu 3 139 -10 7 1340 1014 136 13 7 chr1 98978170 98978354 -98217078 + Lx4B LINE L1 5641 5825 -619 7 1340 13287 129 20 2 chr1 98978354 98979894 -98215538 + L1_Mus3 LINE L1 3725 5280 -603 7 1340 4044 87 18 9 chr1 98979894 98980462 -98214970 + L1Md_F2 LINE L1 5996 6568 -14 7 1340 13287 105 14 1 chr1 98980462 98981778 -98213654 + L1_Mus3 LINE L1 5281 6630 -8 7 1340 3152 229 47 12 chr1 98981812 98982922 -98212510 + Lx3C LINE L1 5784 6996 -1 7 1340 365 39 20 0 chr1 98983110 98983161 -98212271 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1340 308 332 56 34 chr1 98983443 98983677 -98211755 - L1MEg LINE L1 -4167 1917 1679 7 1340 227 218 19 19 chr1 98984286 98984389 -98211043 + (TA)n Simple_repeat Simple_repeat 1 103 0 7 1340 731 317 55 43 chr1 98985569 98985826 -98209606 + B4 SINE B4 1 260 -32 7 1340 616 311 138 29 chr1 98986715 98986950 -98208482 + L1M2 LINE L1 4230 4487 -1656 7 1340 369 0 0 0 chr1 98986950 98986991 -98208441 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1340 616 311 138 29 chr1 98986991 98987344 -98208088 + L1M2 LINE L1 4488 4897 -1246 7 1340 1199 73 0 0 chr1 98987344 98987509 -98207923 - L1Md_F2 LINE L1 -12 6570 6406 8 1340 616 311 138 29 chr1 98987509 98987820 -98207612 + L1M2 LINE L1 4898 5227 -916 7 1340 5805 233 62 76 chr1 98987973 98988537 -98206895 + MurERV4-int LTR ERVK 1 598 -4662 8 1340 290 29 0 0 chr1 98988537 98988571 -98206861 - L1_Mus3 LINE L1 -740 5898 5865 8 1340 4956 114 1 3 chr1 98988571 98989294 -98206138 + L1_Mus4 LINE L1 5915 6636 0 8 1340 5805 233 62 76 chr1 98989294 98990257 -98205175 + MurERV4-int LTR ERVK 599 1550 -3710 8 1340 180 0 0 0 chr1 98990257 98990277 -98205155 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1340 5805 233 62 76 chr1 98990277 98990473 -98204959 + MurERV4-int LTR ERVK 1551 1735 -3525 8 1340 1156 186 134 14 chr1 98990474 98990758 -98204674 + MurERV4-int LTR ERVK 4943 5260 0 8 1340 1937 222 137 10 chr1 98990758 98991277 -98204155 + RMER4B LTR ERVK 1 585 0 8 1340 375 267 36 42 chr1 98991360 98991528 -98203904 + L1M2 LINE L1 5461 5627 -673 7 1340 821 159 6 0 chr1 98991925 98992088 -98203344 + (TA)n Simple_repeat Simple_repeat 2 165 0 8 1340 212 333 129 20 chr1 98992666 98992767 -98202665 + PB1D7 SINE Alu 2 113 -7 8 1340 1109 320 52 34 chr1 98992971 98993706 -98201726 + Lx7 LINE L1 4543 5290 -590 8 1340 944 256 11 19 chr1 98993829 98994096 -98201336 + Lx7 LINE L1 5711 5975 -1721 8 1340 955 50 0 0 chr1 98995331 98995452 -98199980 - B1_Mm SINE Alu -5 142 22 8 1340 4374 94 2 2 chr1 98995464 98996070 -98199362 + L1Md_F2 LINE L1 5967 6572 -10 8 1340 258 219 47 0 chr1 98996984 98997048 -98198384 + (CATA)n Simple_repeat Simple_repeat 3 69 0 8 1340 265 252 157 7 chr1 98997062 98997202 -98198230 - L1MA4 LINE L1 -371 5929 5769 8 1340 3181 61 2 2 chr1 98997509 98997905 -98197527 + MTA_Mm LTR MaLR 1 396 0 8 1340 7460 77 20 68 chr1 98997905 98999059 -98196373 + MTA_Mm-int LTR MaLR 1 1098 0 8 1340 2836 63 42 13 chr1 98999059 98999444 -98195988 + MTA_Mm LTR MaLR 1 396 0 8 1340 319 22 0 0 chr1 98999469 98999514 -98195918 - L1Md_F3 LINE L1 -14 6570 6526 8 1340 326 316 40 20 chr1 98999580 98999680 -98195752 - B3A SINE B2 -96 102 1 8 1340 320 281 86 2 chr1 98999691 98999909 -98195523 - L1MA4 LINE L1 -691 5600 5333 8 1340 356 273 23 0 chr1 98999909 98999997 -98195435 + B1_Mus1 SINE Alu 1 90 -58 8 1340 427 258 103 75 chr1 99000088 99000302 -98195130 - MT2B LTR ERVL -41 560 341 1 1340 218 216 10 40 chr1 99000514 99000615 -98194817 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1340 438 20 0 0 chr1 99000617 99000668 -98194764 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3 1340 2717 30 9 6 chr1 99000958 99001292 -98194140 - L1Md_F2 LINE L1 0 6582 6248 4 1340 627 104 8 34 chr1 99001504 99001623 -98193809 - L1_Mur2 LINE L1 -517 5360 5245 5 1340 217 240 40 0 chr1 99002008 99002058 -98193374 - ID4_ SINE ID -5 78 27 6 1340 23 0 0 0 chr1 99002668 99002691 -98192741 + AT_rich Low_complexity Low_complexity 1 23 0 7 1340 785 230 99 0 chr1 99002714 99002905 -98192527 - B3 SINE B2 -6 210 1 8 1340 856 308 80 64 chr1 99003151 99003962 -98191470 + L1M2 LINE L1 4240 5066 -820 9 1340 283 151 174 0 chr1 99004391 99004477 -98190955 + Lx9 LINE L1 7467 7567 -77 1 1340 25 51 0 0 chr1 99004497 99004536 -98190896 + AT_rich Low_complexity Low_complexity 1 39 0 1 1340 507 17 0 0 chr1 99005087 99005147 -98190285 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1340 515 295 115 1 chr1 99005265 99005514 -98189918 - L1M2 LINE L1 -694 5606 5329 1 1340 358 302 63 91 chr1 99005564 99005739 -98189693 + MT2B LTR ERVL 348 517 -84 1 1340 201 200 45 15 chr1 99005743 99005809 -98189623 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1340 250 161 42 35 chr1 99005809 99005951 -98189481 + (TATAA)n Simple_repeat Simple_repeat 4 146 0 1 1340 234 155 0 66 chr1 99005963 99006039 -98189393 + (TTAA)n Simple_repeat Simple_repeat 3 73 0 1 1340 29109 168 37 18 chr1 99006092 99007409 -98188023 + L1_Mus2 LINE L1 387 1736 -4147 1 1340 1962 148 3 3 chr1 99007409 99007720 -98187712 + RLTR10E LTR ERVK 1 311 0 1 1340 29109 121 4 9 chr1 99007720 99012583 -98182849 + L1_Mus2 LINE L1 1737 6566 0 1 1340 3518 229 62 69 chr1 99012894 99014163 -98181269 + L1_Mur3 LINE L1 3685 4944 -936 2 1340 423 236 0 9 chr1 99014174 99014281 -98181151 - Lx7 LINE L1 -1450 6246 6141 2 1340 252 262 18 18 chr1 99014321 99014430 -98181002 + (CAAA)n Simple_repeat Simple_repeat 2 110 0 2 1340 1022 104 6 25 chr1 99014446 99014604 -98180828 + ORR1A2 LTR MaLR 122 276 -51 2 1340 308 275 33 0 chr1 99014613 99014704 -98180728 - Lx7 LINE L1 -385 7311 7218 2 1340 248 215 0 60 chr1 99014735 99014819 -98180613 + Lx7 LINE L1 7616 7694 -2 2 1340 448 347 32 70 chr1 99015399 99015684 -98179748 - MLT2C2 LTR ERVL -158 306 33 2 1340 217 164 31 47 chr1 99015707 99015771 -98179661 + (TTTAA)n Simple_repeat Simple_repeat 2 64 0 2 1340 21 36 0 0 chr1 99015849 99015877 -98179555 + AT_rich Low_complexity Low_complexity 1 28 0 2 1340 206 255 0 18 chr1 99016799 99016855 -98178577 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 2 1340 423 0 0 0 chr1 99017112 99017159 -98178273 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1340 6285 72 66 2 chr1 99017339 99018141 -98177291 + L1Md_F2 LINE L1 5659 6481 -101 3 1340 191 36 36 0 chr1 99018141 99018169 -98177263 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 3 1340 6285 72 66 2 chr1 99018169 99018229 -98177203 + L1Md_F2 LINE L1 6482 6575 -7 3 1340 1065 109 0 0 chr1 99018242 99018380 -98177052 + B1_Mus1 SINE Alu 3 140 -8 3 1340 222 37 0 0 chr1 99018381 99018408 -98177024 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 3 1340 825 107 0 0 chr1 99019119 99019241 -98176191 + (TCC)n Simple_repeat Simple_repeat 2 123 0 3 1340 566 28 14 0 chr1 99019241 99019313 -98176119 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1340 388 294 105 46 chr1 99019372 99019611 -98175821 - Lx8 LINE L1 -323 7150 6898 3 1340 647 274 14 19 chr1 99020400 99020612 -98174820 + B3 SINE B2 1 211 -5 3 1340 608 0 14 0 chr1 99020968 99021040 -98174392 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1340 270 0 0 0 chr1 99021040 99021069 -98174363 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1340 367 385 15 0 chr1 99021076 99021211 -98174221 - B3A SINE B2 -43 155 19 4 1340 2876 85 29 12 chr1 99023282 99023699 -98171733 + L1Md_F2 LINE L1 6157 6580 -2 4 1340 22 56 0 0 chr1 99023900 99023936 -98171496 + AT_rich Low_complexity Low_complexity 1 36 0 4 1340 237 211 17 17 chr1 99024954 99025012 -98170420 + GA-rich Low_complexity Low_complexity 5 62 0 4 1340 214 125 50 0 chr1 99025239 99025279 -98170153 + GA-rich Low_complexity Low_complexity 5 46 0 4 1340 279 0 0 0 chr1 99025580 99025611 -98169821 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1340 14454 121 40 3 chr1 99025642 99025826 -98169606 - L1_Mm LINE L1 -1489 4394 4209 4 1340 405 0 0 0 chr1 99025826 99025871 -98169561 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1340 14454 121 40 3 chr1 99025871 99028054 -98167378 - L1_Mus3 LINE L1 -1675 4208 1940 4 1340 10802 119 5 21 chr1 99028029 99030512 -98164920 + L1_Mus3 LINE L1 4170 6631 -7 4 1340 2214 229 97 129 chr1 99030517 99030966 -98164466 + ORR1B1-int LTR MaLR 791 1231 -278 4 1340 477 50 0 0 chr1 99030966 99031026 -98164406 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1340 2214 229 97 129 chr1 99031026 99031319 -98164113 + ORR1B1-int LTR MaLR 1232 1509 0 4 1340 1322 247 25 2 chr1 99031328 99031657 -98163775 + ORR1B1 LTR MaLR 20 391 -3 4 1340 243 311 93 29 chr1 99031872 99032011 -98163421 + Tigger7 DNA MER2_type 500 647 -1844 5 1340 1073 101 0 7 chr1 99032157 99032306 -98163126 + B1_Mus1 SINE Alu 1 148 0 5 1340 262 317 69 25 chr1 99032316 99032591 -98162841 + L1M3b LINE L1 1345 1635 -4646 5 1340 506 359 48 48 chr1 99033085 99033480 -98161952 - MTE-int LTR MaLR -18 1562 1168 5 1340 250 318 73 96 chr1 99033573 99033792 -98161640 - MTE-int LTR MaLR -562 1018 805 5 1340 1503 188 91 0 chr1 99034966 99035264 -98160168 - RLTR13D3 LTR ERVK 0 1114 790 5 1340 3469 80 23 2 chr1 99035265 99035742 -98159690 - L1_Mus2 LINE L1 -1 6565 6079 5 1340 2828 41 0 0 chr1 99035742 99036085 -98159347 + L1_Mus2 LINE L1 5592 5934 -632 5 1340 3576 176 91 4 chr1 99036085 99036763 -98158669 - RLTR13D3 LTR ERVK -377 737 1 5 1340 311 274 0 0 chr1 99036831 99036893 -98158539 - RSINE1 SINE B4 -99 66 5 5 1340 1457 197 71 19 chr1 99037629 99037939 -98157493 - ORR1A3 LTR MaLR 0 326 1 5 1340 247 377 17 9 chr1 99038228 99038343 -98157089 - RSINE1 SINE B4 -49 116 1 6 1340 30 0 0 0 chr1 99038404 99038434 -98156998 + AT_rich Low_complexity Low_complexity 1 30 0 6 1340 550 191 16 45 chr1 99038737 99038897 -98156535 - Lx2B LINE L1 -1271 5729 5575 6 1340 1839 292 163 19 chr1 99038893 99039637 -98155795 + Lx5 LINE L1 6460 7418 -42 6 1340 25 99 0 0 chr1 99039662 99039743 -98155689 + AT_rich Low_complexity Low_complexity 1 81 0 6 1340 555 53 0 0 chr1 99040108 99040183 -98155249 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1340 1578 260 57 89 chr1 99040603 99040861 -98154571 - Lx6 LINE L1 -469 6991 6741 6 1340 417 20 0 0 chr1 99040861 99040911 -98154521 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1340 1578 260 57 89 chr1 99040911 99040947 -98154485 - Lx6 LINE L1 -720 6740 6726 6 1340 2056 87 43 3 chr1 99040947 99041247 -98154185 - L1_Mus3 LINE L1 0 6638 6327 6 1340 1578 260 57 89 chr1 99041247 99041533 -98153899 - Lx6 LINE L1 -735 6725 6429 6 1340 500 45 15 0 chr1 99041786 99041853 -98153579 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 6 1340 464 191 16 8 chr1 99042026 99042153 -98153279 + Lx9 LINE L1 7515 7642 -2 7 1340 34511 70 3 3 chr1 99042544 99048566 -98146866 - L1Md_F2 LINE L1 -1 6581 561 7 1340 495 73 0 0 chr1 99048750 99048818 -98146614 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1340 265 317 0 0 chr1 99048853 99048913 -98146519 - B3A SINE B2 -134 64 5 7 1340 346 316 125 4 chr1 99048927 99049191 -98146241 - L1_Mur3 LINE L1 -685 5606 5314 7 1340 289 290 7 51 chr1 99049208 99049346 -98146086 + MT2B LTR ERVL 208 460 -141 7 1340 401 199 47 20 chr1 99049386 99049535 -98145897 + (TA)n Simple_repeat Simple_repeat 1 153 0 7 1340 241 226 0 0 chr1 99049537 99049590 -98145842 + MT2B LTR ERVL 530 582 -2 7 1340 253 378 99 26 chr1 99049871 99050023 -98145409 - RSINE1 SINE B4 -2 163 1 7 1340 1889 236 108 27 chr1 99050193 99050899 -98144533 + L1_Mur3 LINE L1 3706 4468 -1412 7 1340 5766 122 23 8 chr1 99050926 99051834 -98143598 - Lx3_Mus LINE L1 -5 7004 6083 7 1340 2836 124 17 4 chr1 99051887 99052355 -98143077 - L1_Mus4 LINE L1 0 6636 6163 8 1340 2325 110 25 3 chr1 99052355 99052710 -98142722 + L1_Mus4 LINE L1 5843 6205 -431 8 1340 2022 262 91 29 chr1 99052716 99053712 -98141720 + L1_Mur3 LINE L1 4563 5620 -260 7 1340 390 250 19 9 chr1 99054016 99054121 -98141311 - Lx7 LINE L1 -1439 6257 6152 8 1340 8798 16 0 1 chr1 99054308 99055337 -98140095 - L1Md_T LINE L1 -1050 4833 3806 8 1340 6725 13 0 0 chr1 99055336 99056100 -98139332 + L1Md_T LINE L1 4823 5586 -297 8 1340 8504 28 1 1 chr1 99056101 99057095 -98138337 + L1Md_T LINE L1 5588 6581 -1 8 1340 271 298 39 0 chr1 99057095 99057199 -98138233 - Lx7 LINE L1 -383 7313 7206 8 1340 237 203 0 42 chr1 99057218 99057290 -98138142 + Lx7 LINE L1 7615 7683 -13 8 1340 401 306 43 87 chr1 99057928 99058182 -98137250 - MLT2C2 LTR ERVL -189 275 33 8 1340 1753 146 35 81 chr1 99058374 99058829 -98136603 - L1_Mur2 LINE L1 -1106 4771 4338 8 1340 578 209 7 21 chr1 99058828 99058970 -98136462 + L1_Mm LINE L1 4785 4924 -959 8 1340 379 206 11 0 chr1 99058977 99059069 -98136363 + L1_Mm LINE L1 5225 5317 -566 8 1340 21 0 0 0 chr1 99059123 99059144 -98136288 + AT_rich Low_complexity Low_complexity 1 21 0 8 1340 230 264 19 0 chr1 99059179 99059232 -98136200 + CT-rich Low_complexity Low_complexity 5 58 0 8 1340 309 26 0 0 chr1 99060878 99060916 -98134516 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 9 1340 24 0 0 0 chr1 99061194 99061218 -98134214 + AT_rich Low_complexity Low_complexity 1 24 0 9 1340 236 339 70 78 chr1 99062556 99062581 -98132851 + B3A SINE B2 18 35 -163 9 1340 1342 95 5 16 chr1 99062581 99062774 -98132658 + B2_Mm1a SINE B2 1 191 -2 9 1340 236 339 70 78 chr1 99062774 99062876 -98132556 + B3A SINE B2 36 144 -54 9 1340 396 88 0 0 chr1 99062889 99062946 -98132486 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1340 241 159 0 24 chr1 99063801 99063885 -98131547 + T-rich Low_complexity Low_complexity 4 85 0 9 1340 513 294 87 43 chr1 99064393 99064578 -98130854 - B3 SINE B2 -23 193 1 9 1340 189 390 11 0 chr1 99064999 99065094 -98130338 - L2 LINE L2 -2004 1415 1320 9 1340 1022 110 0 14 chr1 99065380 99065528 -98129904 + B1_Mus2 SINE Alu 1 146 -1 9 1340 631 124 9 9 chr1 99065529 99065643 -98129789 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 9 1340 270 297 126 44 chr1 99065644 99065827 -98129605 + Lx8 LINE L1 6913 7110 -363 1 1340 211 136 0 22 chr1 99065924 99065969 -98129463 + GA-rich Low_complexity Low_complexity 2 45 0 1 1340 14095 58 2 1 chr1 99066688 99069313 -98126119 - L1Md_F2 LINE L1 -1 6581 3957 1 1340 2532 23 0 0 chr1 99069313 99069616 -98125816 + IAPLTR1a_Mm LTR ERVK 35 337 0 1 1340 21883 28 12 14 chr1 99069616 99072365 -98123067 + IAPEz-int LTR ERVK 8 2751 -3730 1 1340 27557 10 9 2 chr1 99072357 99075083 -98120349 + IAPEz-int LTR ERVK 3244 5996 -485 1 1340 3396 25 5 0 chr1 99075083 99075477 -98119955 - MTA_Mm LTR MaLR 0 396 1 1 1340 8933 40 6 1 chr1 99075477 99076570 -98118862 - MTA_Mm-int LTR MaLR 0 1098 1 1 1340 3396 25 5 0 chr1 99076570 99076964 -98118468 - MTA_Mm LTR MaLR 0 396 1 1 1340 27557 10 9 2 chr1 99076964 99077452 -98117980 + IAPEz-int LTR ERVK 5997 6479 -2 1 1340 2981 21 0 0 chr1 99077452 99077789 -98117643 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1340 5291 79 0 1 chr1 99077793 99078552 -98116880 - L1Md_F2 LINE L1 -2720 3163 2406 1 1340 1525 66 0 0 chr1 99079211 99079409 -98116023 + L1_Mus1 LINE L1 6370 6567 0 1 1340 3762 189 28 15 chr1 99080287 99081028 -98114404 - Lx2B LINE L1 -4 6996 6246 1 1340 2537 170 43 63 chr1 99081093 99081602 -98113830 - RLTR17 LTR ERVK -96 596 98 1 1340 4590 220 53 59 chr1 99081625 99083355 -98112077 - RMER3D-int LTR ERVK 0 2842 1123 1 1340 572 27 0 13 chr1 99083383 99083458 -98111974 + (GAAAA)n Simple_repeat Simple_repeat 5 78 0 1 1340 247 25 0 48 chr1 99083606 99083648 -98111784 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1340 3108 202 21 5 chr1 99083649 99084217 -98111215 - RLTR17 LTR ERVK -18 674 98 1 1340 3203 173 32 9 chr1 99084242 99085115 -98110317 - Lx2B LINE L1 -760 6248 5357 1 1340 26 30 0 0 chr1 99085115 99085148 -98110284 + AT_rich Low_complexity Low_complexity 1 33 0 1 1340 1829 159 33 27 chr1 99085148 99085477 -98109955 - Lx2 LINE L1 -12 6985 6655 1 1340 405 310 25 20 chr1 99086323 99086524 -98108908 + Lx7 LINE L1 7206 7407 -289 1 1340 404 227 93 60 chr1 99086579 99086729 -98108703 + Lx7 LINE L1 6139 6293 -1403 1 1340 644 26 0 0 chr1 99086849 99086925 -98108507 + L1Md_F3 LINE L1 6362 6437 -147 1 1340 215 79 26 0 chr1 99087176 99087214 -98108218 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1340 8024 30 1 10 chr1 99087217 99087886 -98107546 - L1Md_T LINE L1 0 6582 5918 1 1340 3237 26 39 0 chr1 99087886 99088267 -98107165 + MTA_Mm LTR MaLR 1 396 0 1 1340 9210 29 3 2 chr1 99088267 99089362 -98106070 + MTA_Mm-int LTR MaLR 1 1096 -2 1 1340 3257 24 39 0 chr1 99089364 99089745 -98105687 + MTA_Mm LTR MaLR 1 396 0 1 167 37048 31 4 7 chr1 99089745 99095196 -98100236 - L1Md_T LINE L1 -665 5917 489 1 1341 6733 139 7 11 chr1 99095328 99097072 -98098360 - L1_Mus3 LINE L1 0 6638 4908 1 1341 7106 30 0 1 chr1 99097083 99097917 -98097515 - L1Md_T LINE L1 -1 6581 5749 1 1341 2211 8 0 0 chr1 99097917 99098179 -98097253 + L1_Mm LINE L1 5264 5525 -358 1 1341 684 261 112 15 chr1 99098174 99098432 -98097000 - L1_Mur3 LINE L1 -974 4906 4625 1 1341 183 42 0 0 chr1 99098432 99098456 -98096976 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1341 684 261 112 15 chr1 99098456 99098528 -98096904 - L1_Mur3 LINE L1 -1256 4624 4545 1 1341 2137 140 14 0 chr1 99098516 99098874 -98096558 - L1_Mus4 LINE L1 -431 6205 5843 1 1341 2551 136 67 5 chr1 99098875 99099310 -98096122 + L1_Mus4 LINE L1 6164 6625 -11 1 1341 5602 131 32 2 chr1 99099370 99100263 -98095169 + Lx3_Mus LINE L1 6080 6999 -10 1 1341 1677 243 110 7 chr1 99100302 99100454 -98094978 - L1_Mur3 LINE L1 -1412 4468 4274 1 1341 576 0 0 0 chr1 99100454 99100518 -98094914 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1341 1677 243 110 7 chr1 99100518 99101057 -98094375 - L1_Mur3 LINE L1 -1607 4273 3706 1 1341 412 229 15 0 chr1 99101634 99101765 -98093667 - Lx9 LINE L1 -2 7642 7510 1 1341 203 189 0 0 chr1 99101932 99101969 -98093463 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 1 1341 663 317 62 2 chr1 99102249 99102698 -98092734 - L1M2 LINE L1 -1097 5046 4571 1 1341 7093 154 29 8 chr1 99102722 99104995 -98090437 + Lx3B LINE L1 4668 6971 -2 1 1341 2451 71 9 0 chr1 99105540 99105865 -98089567 - L1Md_F2 LINE L1 -1 6581 6254 1 1341 4547 34 3 0 chr1 99105865 99106430 -98089002 + L1Md_F2 LINE L1 5689 6255 -327 1 1341 888 230 67 15 chr1 99106595 99106864 -98088568 - Lx2B LINE L1 -5 6995 6713 1 1341 204 97 0 0 chr1 99107134 99107165 -98088267 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1341 573 232 133 16 chr1 99107168 99107356 -98088076 + B3 SINE B2 1 210 -6 1 1341 344 290 134 21 chr1 99108589 99108776 -98086656 - B3 SINE B2 -8 208 1 1 1341 21 0 0 0 chr1 99109712 99109733 -98085699 + AT_rich Low_complexity Low_complexity 1 21 0 1 1341 279 0 0 0 chr1 99110068 99110099 -98085333 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1341 373 155 36 9 chr1 99110099 99110210 -98085222 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1341 356 313 65 39 chr1 99110210 99110349 -98085083 - MT2B LTR ERVL -61 540 396 1 1341 2418 100 16 16 chr1 99110349 99110715 -98084717 + L1_Mus3 LINE L1 6254 6619 -19 1 1341 426 53 0 0 chr1 99110715 99110772 -98084660 + (TAA)n Simple_repeat Simple_repeat 1 57 0 1 1341 356 313 65 39 chr1 99110772 99110784 -98084648 - MT2B LTR ERVL -206 395 385 1 1341 225 0 0 0 chr1 99110996 99111021 -98084411 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 1 1341 228 362 0 0 chr1 99111021 99111090 -98084342 - B1F2 SINE Alu -80 69 1 1 1341 301 337 98 7 chr1 99111090 99111331 -98084101 + L1_Mur3 LINE L1 5303 5574 -312 1 1341 303 312 12 12 chr1 99111341 99111422 -98084010 + B3A SINE B2 1 81 -117 1 1341 419 284 42 9 chr1 99111579 99111793 -98083639 + L1MA4 LINE L1 5643 5938 -362 1 1341 627 199 12 30 chr1 99111856 99112022 -98083410 + Lx2 LINE L1 6835 6997 0 1 1341 4378 191 2 10 chr1 99112043 99112935 -98082497 + Lx LINE L1 4413 5297 -586 1 1341 21 36 0 0 chr1 99113591 99113619 -98081813 + AT_rich Low_complexity Low_complexity 1 28 0 1 1341 6552 119 74 3 chr1 99113677 99114973 -98080459 + Lx LINE L1 5290 6649 -5 1 1341 2453 87 3 0 chr1 99115550 99115882 -98079550 - L1_Mus2 LINE L1 -233 5650 5318 1 1341 6978 70 6 25 chr1 99115877 99116813 -98078619 + L1_Mus2 LINE L1 5648 6566 0 1 1341 206 241 0 0 chr1 99116816 99116870 -98078562 + A-rich Low_complexity Low_complexity 1 54 0 1 1341 25 0 0 0 chr1 99117023 99117048 -98078384 + AT_rich Low_complexity Low_complexity 1 25 0 1 1341 540 0 0 0 chr1 99117691 99117751 -98077681 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1341 1072 223 15 30 chr1 99117804 99118072 -98077360 - Lx6 LINE L1 -1486 5974 5711 1 1341 1077 312 65 23 chr1 99118143 99118868 -98076564 - Lx6 LINE L1 -559 5321 4567 1 1341 489 17 0 0 chr1 99118873 99118931 -98076501 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1341 783 100 9 0 chr1 99118945 99119055 -98076377 - B1_Mus1 SINE Alu -37 111 1 1 1341 2938 168 74 7 chr1 99119063 99119643 -98075789 - Lx2 LINE L1 -8 6989 6371 1 1341 18943 116 6 22 chr1 99119644 99120744 -98074688 - L1_Mus4 LINE L1 -1 6635 5563 1 1341 2921 9 33 0 chr1 99120744 99121079 -98074353 + ORR1A0 LTR MaLR 1 346 0 1 1341 18943 149 117 59 chr1 99121079 99121916 -98073516 - L1_Mus4 LINE L1 -324 5562 4616 1 1341 230 308 53 59 chr1 99121916 99122085 -98073347 - MLT1E1 LTR MaLR -287 367 200 1 1341 18943 149 117 59 chr1 99122085 99124323 -98071109 - L1_Mus4 LINE L1 -324 4615 2079 1 1341 212 0 36 0 chr1 99124323 99124351 -98071081 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1341 18943 149 117 59 chr1 99124351 99124722 -98070710 - L1_Mus4 LINE L1 -3808 2078 1705 1 1341 405 0 0 0 chr1 99124722 99124767 -98070665 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1341 18943 149 117 59 chr1 99124767 99125144 -98070288 - L1_Mus4 LINE L1 -4182 1704 1313 1 1341 720 159 30 15 chr1 99125156 99125290 -98070142 - L1_Mus4 LINE L1 -6846 138 3 1 1341 256 312 32 5 chr1 99125294 99125481 -98069951 - L1M2 LINE L1 -1763 4380 4189 1 1341 8751 124 33 9 chr1 99125719 99127890 -98067542 + L1_Mus1 LINE L1 265 2489 -3394 1 1341 17695 122 7 6 chr1 99127892 99130064 -98065368 + L1_Mus1 LINE L1 3122 5294 -589 1 1341 4861 77 5 10 chr1 99130064 99130736 -98064696 + L1Md_F2 LINE L1 5904 6571 -11 1 1341 17695 85 3 5 chr1 99130736 99131976 -98063456 + L1_Mus1 LINE L1 5295 6536 -31 1 1341 7752 57 6 0 chr1 99131976 99132953 -98062479 + L1Md_F2 LINE L1 5599 6581 -1 1 1341 7472 74 2 4 chr1 99132953 99132986 -98062446 + L1_Mus1 LINE L1 6537 6567 0 1 1341 757 325 60 39 chr1 99133649 99133931 -98061501 - B4 SINE B4 -4 288 1 1 1341 315 0 0 0 chr1 99133961 99133996 -98061436 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1341 611 302 50 28 chr1 99135640 99135858 -98059574 - BGLII_B LTR ERVK -10 431 209 1 1341 21 0 0 0 chr1 99136254 99136275 -98059157 + AT_rich Low_complexity Low_complexity 1 21 0 1 1341 2702 173 11 11 chr1 99136366 99136910 -98058522 - L1_Mur2 LINE L1 -562 5315 4772 1 1341 5366 147 16 5 chr1 99136902 99138030 -98057402 + Lx LINE L1 5319 6458 -196 1 1341 1148 55 14 7 chr1 99138513 99138661 -98056771 + B1_Mur4 SINE Alu 2 150 0 1 1341 23 0 0 0 chr1 99140188 99140211 -98055221 + AT_rich Low_complexity Low_complexity 1 23 0 1 1341 5160 204 52 20 chr1 99140808 99142807 -98052625 - Lx5 LINE L1 -4 7046 4976 1 1341 7398 186 133 17 chr1 99142798 99145222 -98050210 - Lx2A1 LINE L1 0 7008 4281 1 1341 32003 60 3 9 chr1 99145318 99150275 -98045157 - L1Md_F3 LINE L1 -2 6582 1655 1 1341 902 167 0 30 chr1 99150270 99150437 -98044995 - L1VL1 LINE L1 -6200 222 61 1 1341 653 25 0 0 chr1 99150537 99150616 -98044816 - L1_Mm LINE L1 -4017 1866 1788 1 1341 456 347 13 20 chr1 99150893 99151046 -98044386 - RLTR18 LTR ERVK 0 616 465 1 1341 467 269 0 16 chr1 99151264 99151385 -98044047 - RLTR18-int LTR ERVK -2434 2927 2809 1 1341 243 0 0 0 chr1 99151687 99151714 -98043718 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1341 657 58 0 0 chr1 99151957 99152043 -98043389 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 1 1341 292 268 42 53 chr1 99152106 99152295 -98043137 - RLTR18-int LTR ERVK -5167 194 8 1 1341 949 309 86 92 chr1 99152327 99152947 -98042485 - RLTR18 LTR ERVK 0 616 1 1 1341 561 326 51 0 chr1 99153002 99153198 -98042234 + B3 SINE B2 4 209 -7 1 1341 885 96 96 6 chr1 99153293 99153450 -98041982 + L1_Mus3 LINE L1 6462 6632 -6 1 1341 757 274 19 9 chr1 99153731 99153941 -98041491 - B3 SINE B2 0 216 5 1 1341 260 178 0 0 chr1 99154608 99154653 -98040779 - ID2 SINE ID -38 45 1 1 1341 2144 100 19 3 chr1 99154661 99154981 -98040451 - L1_Mus3 LINE L1 0 6638 6314 1 1341 794 50 0 0 chr1 99155065 99155164 -98040268 + B1_Mm SINE Alu 35 133 -14 1 1341 315 0 0 0 chr1 99155165 99155200 -98040232 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1341 228 143 0 0 chr1 99155444 99155486 -98039946 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1341 9405 166 23 12 chr1 99155545 99158232 -98037200 + Lx LINE L1 3948 6654 0 1 1341 469 356 27 23 chr1 99158271 99158492 -98036940 - B4 SINE B4 -24 268 47 1 1341 27 92 0 0 chr1 99158698 99158774 -98036658 + AT_rich Low_complexity Low_complexity 1 76 0 1 1341 3245 205 53 10 chr1 99159060 99159755 -98035677 - RMER1A Other Other -1 1029 305 1 1341 706 316 49 40 chr1 99159754 99160001 -98035431 - RMER1A Other Other -607 423 175 1 1341 230 254 48 0 chr1 99160746 99160809 -98034623 - MTEa LTR MaLR -21 358 293 1 1341 241 371 124 25 chr1 99161323 99161525 -98033907 - MLT1E2 LTR MaLR -137 490 269 1 1341 1213 254 88 11 chr1 99161827 99162189 -98033243 - Lx6 LINE L1 -19 7441 7052 1 1341 1521 253 63 7 chr1 99162228 99162638 -98032794 - Lx6 LINE L1 -566 6894 6462 1 1341 880 246 66 0 chr1 99162638 99162849 -98032583 - URR1A DNA MER1_type 0 226 2 2 1341 2191 278 61 28 chr1 99162858 99163677 -98031755 - Lx6 LINE L1 -1000 6460 5615 1 1341 3217 223 132 5 chr1 99163672 99164625 -98030807 - Lx6 LINE L1 -430 5450 4377 1 1341 6538 108 18 0 chr1 99164633 99165616 -98029816 + L1_Mus4 LINE L1 5539 6538 -98 2 1341 578 229 59 85 chr1 99165608 99165913 -98029519 + Lx9 LINE L1 7347 7643 -1 2 1341 5992 92 19 4 chr1 99167328 99168168 -98027264 - L1_Mus3 LINE L1 -6 6632 5780 2 1341 338 390 7 22 chr1 99168449 99168588 -98026844 + RSINE1 SINE B4 3 139 -26 2 1341 1174 55 7 0 chr1 99168846 99168991 -98026441 + B1_Mm SINE Alu 2 147 0 2 1341 35679 65 14 5 chr1 99169450 99175352 -98020080 - L1Md_F2 LINE L1 0 6582 631 2 1341 37183 24 2 7 chr1 99175849 99181206 -98014226 + L1Md_A LINE L1 261 5586 -297 2 1341 8267 43 0 0 chr1 99181206 99182202 -98013230 + L1Md_A LINE L1 5587 6582 0 2 1341 236 309 24 0 chr1 99182212 99182296 -98013136 + ID_B1 SINE B4 132 217 -7 2 1341 546 86 0 0 chr1 99182296 99182377 -98013055 + (CATA)n Simple_repeat Simple_repeat 2 82 0 2 1341 466 320 16 0 chr1 99182451 99182576 -98012856 + B1_Mur1 SINE Alu 2 128 -21 2 1341 25 0 0 0 chr1 99182904 99182929 -98012503 + AT_rich Low_complexity Low_complexity 1 25 0 2 1341 6983 141 33 28 chr1 99183098 99184966 -98010466 - Lx3C LINE L1 -135 6841 4962 2 1341 4439 158 27 4 chr1 99184963 99185804 -98009628 + Lx3C LINE L1 4069 4929 -957 2 1341 963 70 8 0 chr1 99185805 99185934 -98009498 + B1_Mus2 SINE Alu 2 131 -16 2 1341 405 0 0 0 chr1 99185941 99185986 -98009446 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1341 1427 243 36 3 chr1 99186111 99186441 -98008991 + Lx5 LINE L1 6584 6924 -126 2 1341 1245 294 89 15 chr1 99187940 99188402 -98007030 - Lx8 LINE L1 -764 6709 6214 2 1341 584 333 44 25 chr1 99188414 99188819 -98006613 + Lx7 LINE L1 5587 5990 -1654 2 1341 352 250 12 48 chr1 99189298 99189382 -98006050 + Tigger7 DNA MER2_type 2404 2484 -7 2 1341 461 163 0 11 chr1 99189716 99189809 -98005623 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1341 24 53 0 0 chr1 99190029 99190067 -98005365 + AT_rich Low_complexity Low_complexity 1 38 0 2 1341 1455 253 42 34 chr1 99190349 99190730 -98004702 + ORR1B1 LTR MaLR 3 386 -8 2 1341 2061 209 78 18 chr1 99190734 99191284 -98004148 + ORR1B1-int LTR MaLR 1 583 -926 2 1341 7104 143 12 2 chr1 99191287 99193202 -98002230 + L1_Mus4 LINE L1 4693 6626 -10 2 1341 296 318 0 0 chr1 99193225 99193251 -98002181 + ORR1B1-int LTR MaLR 624 715 -794 2 1341 522 279 35 21 chr1 99193251 99193394 -98002038 + B1_Mus2 SINE Alu 3 147 0 2 1341 296 318 0 0 chr1 99193394 99193420 -98002012 + ORR1B1-int LTR MaLR 716 818 -691 2 1341 7289 70 5 31 chr1 99193420 99194464 -98000968 + L1_Mus2 LINE L1 5550 6566 0 2 1341 265 171 0 239 chr1 99194485 99194577 -98000855 + ORR1B1-int LTR MaLR 1867 1936 -27 2 1341 2208 183 3 0 chr1 99194546 99194923 -98000509 + ORR1B1 LTR MaLR 17 394 0 2 1341 243 339 64 41 chr1 99195172 99195344 -98000088 + Tigger7 DNA MER2_type 500 675 -1816 2 1341 304 317 24 15 chr1 99195478 99195710 -97999722 + L1M3b LINE L1 1390 1633 -4648 2 1341 246 246 77 26 chr1 99195733 99195850 -97999582 + L1M2 LINE L1 5750 5872 -419 2 1341 23 0 0 0 chr1 99195898 99195921 -97999511 + AT_rich Low_complexity Low_complexity 1 23 0 2 1341 625 360 118 46 chr1 99196218 99196619 -97998813 - MTE-int LTR MaLR -36 1544 1109 2 1341 278 26 26 0 chr1 99196619 99196658 -97998774 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1341 625 360 118 46 chr1 99196658 99196935 -97998497 - MTE-int LTR MaLR -472 1108 818 2 1341 381 339 67 31 chr1 99197022 99197217 -97998215 - MLT-int LTR MaLR -986 749 548 2 1341 2815 82 42 2 chr1 99197669 99198074 -97997358 - BGLII LTR ERVK 0 421 1 2 1341 4928 247 48 113 chr1 99199081 99200699 -97994733 - Lx6 LINE L1 -30 7430 5946 2 1341 1607 194 62 20 chr1 99200699 99201051 -97994381 + ORR1B2 LTR MaLR 1 367 0 2 1341 4928 247 48 113 chr1 99201051 99201101 -97994331 - Lx6 LINE L1 -1515 5945 5898 2 1341 279 0 0 0 chr1 99201101 99201132 -97994300 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2 1341 4928 247 48 113 chr1 99201132 99201218 -97994214 - Lx6 LINE L1 -1563 5897 5791 2 1341 636 219 84 19 chr1 99201247 99201401 -97994031 - B2_Mm2 SINE B2 -31 164 1 2 1341 6147 226 40 13 chr1 99201401 99203022 -97992410 - Lx6 LINE L1 -85 5795 4132 2 1341 3371 272 65 17 chr1 99203012 99205309 -97990123 - Lx6 LINE L1 -3855 2025 19 2 1341 243 263 0 0 chr1 99205586 99205742 -97989690 + (TG)n Simple_repeat Simple_repeat 2 157 0 2 1341 23 54 0 0 chr1 99205825 99205862 -97989570 + AT_rich Low_complexity Low_complexity 1 37 0 2 1341 252 286 0 31 chr1 99205937 99206002 -97989430 - RSINE1 SINE B4 -98 67 5 2 1341 1498 185 76 0 chr1 99206729 99207032 -97988400 - ORR1A3 LTR MaLR 0 326 1 2 1341 245 333 37 9 chr1 99207324 99207433 -97987999 - RSINE1 SINE B4 -51 114 3 2 1341 21 0 0 0 chr1 99207505 99207526 -97987906 + AT_rich Low_complexity Low_complexity 1 21 0 2 1341 471 246 9 0 chr1 99207879 99207993 -97987439 - L1_Mur3 LINE L1 -191 5689 5575 2 1341 751 298 92 12 chr1 99207989 99208371 -97987061 + Lx5 LINE L1 6350 6700 -350 2 1341 6535 79 17 26 chr1 99209356 99210278 -97985154 - L1_Mus2 LINE L1 0 6566 5653 2 1341 7034 80 11 24 chr1 99210278 99211526 -97983906 + L1_Mus2 LINE L1 5318 6553 -13 2 1341 2507 118 13 5 chr1 99211561 99211944 -97983488 - L1_Mus3 LINE L1 -7 6631 6246 2 1341 309 326 82 10 chr1 99212333 99212528 -97982904 - L1M2 LINE L1 -736 5555 5347 2 1341 512 253 27 20 chr1 99212690 99212839 -97982593 + B1_Mur4 SINE Alu 1 150 0 2 1341 4879 119 20 161 chr1 99212965 99213387 -97982045 + L1_Mus3 LINE L1 4928 5348 -535 2 1341 436 224 41 130 chr1 99213387 99213407 -97982025 + B4A SINE B4 71 196 -96 2 1341 1015 82 7 33 chr1 99213407 99213515 -97981917 + B1_Mus2 SINE Alu 1 108 -39 2 1341 4174 48 2 2 chr1 99213515 99214018 -97981414 - RLTR1C LTR ERV1 0 503 1 2 1341 436 224 41 130 chr1 99214018 99214058 -97981374 + B4A SINE B4 197 224 -68 2 1341 7264 89 34 43 chr1 99214060 99215323 -97980109 + L1_Mus3 LINE L1 5349 6638 0 2 1341 519 253 62 106 chr1 99215397 99215605 -97979827 + MT2B LTR ERVL 341 539 -62 2 1341 348 24 0 0 chr1 99215627 99215668 -97979764 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1341 257 280 56 9 chr1 99216641 99216749 -97978683 - BC1_Mm scRNA scRNA -37 115 3 2 1341 631 257 98 10 chr1 99217390 99217583 -97977849 - B3 SINE B2 -6 210 1 2 1341 1069 250 56 16 chr1 99217854 99218175 -97977257 + Lx2B LINE L1 6662 6995 -5 2 1341 494 358 58 38 chr1 99218176 99218626 -97976806 + L1M2 LINE L1 3916 4374 -1769 2 1341 321 225 34 0 chr1 99218738 99218827 -97976605 + L1_Mur3 LINE L1 4430 4521 -1359 2 1341 1561 158 21 11 chr1 99218849 99219130 -97976302 - Lx3B LINE L1 -8 6973 6690 2 1341 5967 137 38 7 chr1 99219129 99219677 -97975755 - Lx3B LINE L1 -387 6586 6044 2 1341 189 0 0 0 chr1 99219677 99219698 -97975734 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 2 1341 6153 112 25 6 chr1 99219698 99220775 -97974657 - Lx3B LINE L1 -930 6043 4936 2 167 4604 121 30 14 chr1 99220775 99221546 -97973886 - RMER17B LTR ERVK 0 958 176 2 1342 699 329 58 4 chr1 99221547 99221999 -97973433 + L1M2 LINE L1 4571 5046 -1097 2 1342 21 0 0 0 chr1 99222294 99222315 -97973117 + AT_rich Low_complexity Low_complexity 1 21 0 2 1342 398 218 15 8 chr1 99222492 99222626 -97972806 + Lx9 LINE L1 7510 7644 0 2 1342 12767 53 5 1 chr1 99222734 99225029 -97970403 - L1Md_F3 LINE L1 -14 6570 4266 2 1342 9943 149 21 3 chr1 99225028 99226795 -97968637 - L1_Mm LINE L1 -466 5417 3620 2 1342 11778 109 22 8 chr1 99226802 99228681 -97966751 + MusHAL1 LINE L1 272 2176 -536 2 1342 24372 86 11 16 chr1 99228694 99232219 -97963213 - Lx3_Mus LINE L1 0 7009 3480 2 1342 414 0 0 0 chr1 99232219 99232265 -97963167 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 1342 180 0 0 0 chr1 99232266 99232286 -97963146 + (CTTG)n Simple_repeat Simple_repeat 1 20 0 2 1342 24372 87 12 16 chr1 99232286 99233436 -97961996 - Lx3_Mus LINE L1 -2407 3479 2354 2 1342 1981 196 78 92 chr1 99233436 99233977 -97961455 + RMER16 LTR ERVK 1 533 0 2 1342 7601 82 3 8 chr1 99234038 99235082 -97960350 - L1Md_F2 LINE L1 -8 6574 5560 2 1342 233 218 176 10 chr1 99235630 99235732 -97959700 - L1M2 LINE L1 -714 5598 5480 2 1342 209 134 80 9 chr1 99235780 99235893 -97959539 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 1342 268 368 84 13 chr1 99236269 99236423 -97959009 - RSINE1 SINE B4 0 165 1 2 1342 1800 220 53 9 chr1 99236599 99237123 -97958309 + L1_Mur3 LINE L1 3681 4227 -1653 2 1342 2522 105 8 3 chr1 99237137 99237508 -97957924 + L1_Mus3 LINE L1 6260 6632 -6 2 1342 301 226 0 16 chr1 99237697 99237760 -97957672 - Lx7 LINE L1 -1449 6247 6186 2 1342 306 0 0 0 chr1 99237761 99237795 -97957637 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1342 7612 65 1 3 chr1 99237995 99239015 -97956417 + L1Md_F2 LINE L1 5597 6582 0 2 1342 464 299 38 94 chr1 99239862 99240128 -97955304 - MLT2C2 LTR ERVL -189 275 25 2 1342 27 103 0 0 chr1 99240137 99240234 -97955198 + AT_rich Low_complexity Low_complexity 1 97 0 2 1342 226 114 43 43 chr1 99240302 99240348 -97955084 - L1_Mur2 LINE L1 -1106 4780 4735 2 1342 1126 85 6 11 chr1 99240368 99240546 -97954886 - L1Md_F2 LINE L1 0 6582 6406 2 1342 1442 80 0 11 chr1 99240546 99240736 -97954696 + L1Md_F2 LINE L1 6204 6391 -191 2 1342 243 0 0 0 chr1 99240745 99240772 -97954660 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1342 1942 159 36 10 chr1 99240772 99241152 -97954280 - L1_Mur1 LINE L1 -1149 4728 4339 2 1342 3802 184 21 19 chr1 99241151 99241944 -97953488 + L1_Mur1 LINE L1 4788 5582 -304 2 1342 187 130 39 98 chr1 99242257 99242308 -97953124 - L3 LINE CR1 -2333 2156 2109 2 1342 370 180 44 103 chr1 99242501 99242637 -97952795 + L1_Mur3 LINE L1 5184 5311 -566 2 1342 22 35 0 0 chr1 99242695 99242724 -97952708 + AT_rich Low_complexity Low_complexity 1 29 0 2 1342 188 135 27 0 chr1 99242761 99242798 -97952634 + CT-rich Low_complexity Low_complexity 2 39 0 2 1342 26 30 0 0 chr1 99243784 99243817 -97951615 + AT_rich Low_complexity Low_complexity 1 33 0 2 1342 25 65 0 0 chr1 99244681 99244727 -97950705 + AT_rich Low_complexity Low_complexity 1 46 0 2 1342 21 36 0 0 chr1 99244768 99244796 -97950636 + AT_rich Low_complexity Low_complexity 1 28 0 2 1342 265 348 69 9 chr1 99246105 99246221 -97949211 + B3A SINE B2 22 144 -54 2 1342 369 0 0 0 chr1 99246234 99246275 -97949157 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1342 428 51 17 0 chr1 99246275 99246334 -97949098 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1342 273 84 71 12 chr1 99247141 99247225 -97948207 + T-rich Low_complexity Low_complexity 3 91 0 2 1342 486 0 0 0 chr1 99247776 99247830 -97947602 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1342 566 244 8 0 chr1 99247853 99247976 -97947456 - B3 SINE B2 -92 124 1 3 1342 271 331 63 16 chr1 99248809 99248999 -97946433 + Lx8 LINE L1 6968 7166 -307 3 1342 743 21 11 0 chr1 99249041 99249134 -97946298 + (GA)n Simple_repeat Simple_repeat 1 94 0 3 1342 208 271 0 33 chr1 99250988 99251049 -97944383 + GA-rich Low_complexity Low_complexity 1 59 0 3 1342 7946 74 8 4 chr1 99251209 99252957 -97942475 - L1Md_F2 LINE L1 -3 6579 4829 3 1342 15326 71 6 4 chr1 99252955 99255056 -97940376 + L1Md_F2 LINE L1 2723 4826 -1057 3 1342 3777 183 40 11 chr1 99255093 99255827 -97939605 - Lx2B LINE L1 0 7000 6246 3 1342 718 224 14 0 chr1 99255894 99256037 -97939395 - RLTR17 LTR ERVK -96 596 452 3 1342 928 129 18 6 chr1 99256043 99256207 -97939225 - RMER3D-int LTR ERVK -1394 1448 1283 3 1342 14727 81 32 4 chr1 99256234 99258926 -97936506 - L1_Mus2 LINE L1 -1 6565 3808 3 1342 2609 176 1 96 chr1 99258922 99259665 -97935767 - L1_Mus2 LINE L1 -4478 1405 725 3 1342 423 263 93 88 chr1 99259637 99259841 -97935591 - L1_Mus2 LINE L1 -5813 803 405 3 1342 331 256 7 172 chr1 99259893 99260044 -97935388 - L1VL1 LINE L1 -6076 346 221 3 1342 1331 225 68 84 chr1 99260045 99260891 -97934541 - RMER3D-int LTR ERVK -1548 1294 157 3 1342 728 99 0 9 chr1 99260973 99261085 -97934347 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 3 1342 3195 177 34 14 chr1 99261166 99261185 -97934247 - RLTR17 LTR ERVK 0 692 674 3 1342 243 0 0 0 chr1 99261185 99261212 -97934220 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1342 567 0 0 0 chr1 99261212 99261274 -97934158 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1342 3195 177 34 14 chr1 99261274 99261836 -97933596 - RLTR17 LTR ERVK -19 673 99 3 1342 3496 163 35 11 chr1 99261859 99262240 -97933192 - Lx2B LINE L1 -744 6253 5855 3 1342 531 0 0 0 chr1 99262240 99262299 -97933133 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1342 5043 191 3 40 chr1 99262299 99262833 -97932599 - Lx2B LINE L1 -30 5847 5344 3 1342 5552 153 44 12 chr1 99262833 99263826 -97931606 - Lx2 LINE L1 -15 6982 5958 3 1342 5043 191 3 40 chr1 99263826 99264402 -97931030 - Lx2B LINE L1 -534 5343 4779 3 1342 2459 166 11 0 chr1 99264401 99264853 -97930579 + Lx2B LINE L1 4338 4794 -1083 3 1342 24 96 0 0 chr1 99264933 99265006 -97930426 + AT_rich Low_complexity Low_complexity 1 73 0 3 1342 384 338 45 24 chr1 99265032 99265275 -97930157 + MLT2C2 LTR ERVL 33 281 -133 3 1342 359 318 41 10 chr1 99265974 99266171 -97929261 + Lx7 LINE L1 7206 7408 -288 3 1342 392 234 92 72 chr1 99266238 99266390 -97929042 + Lx7 LINE L1 6139 6293 -1403 3 1342 8072 133 28 54 chr1 99266511 99268506 -97926926 - L1Md_F2 LINE L1 0 6582 4648 3 1342 240 122 0 0 chr1 99268506 99268547 -97926885 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1342 2643 94 0 3 chr1 99268618 99268982 -97926450 - L1_Mus4 LINE L1 -429 6207 5845 3 1342 2943 129 9 2 chr1 99268984 99269449 -97925983 + L1_Mus4 LINE L1 6163 6630 -6 3 1342 1650 116 16 0 chr1 99269489 99269740 -97925692 + Lx3_Mus LINE L1 6080 6334 -675 3 1342 2383 75 18 3 chr1 99269743 99270076 -97925356 + L1_Mus3 LINE L1 6285 6622 -16 3 1342 3775 138 48 3 chr1 99270085 99270725 -97924707 + Lx3_Mus LINE L1 6332 7000 -9 3 1342 2414 226 70 12 chr1 99270761 99271500 -97923932 - L1Md_F2 LINE L1 -1412 4468 3687 3 1342 6416 35 3 0 chr1 99271788 99272553 -97922879 + L1Md_T LINE L1 5815 6581 -1 3 1342 271 189 0 0 chr1 99272937 99272990 -97922442 - MT2B2 LTR ERVL -2 582 530 3 1342 299 112 77 8 chr1 99273024 99273141 -97922291 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1342 268 263 75 0 chr1 99273166 99273272 -97922160 - MT2B2 LTR ERVL -113 488 384 3 1342 336 297 134 32 chr1 99273365 99273612 -97921820 + L1_Mur3 LINE L1 5338 5609 -703 3 1342 251 344 0 0 chr1 99273615 99273676 -97921756 + B3A SINE B2 5 65 -133 3 1342 254 73 24 0 chr1 99273725 99273766 -97921666 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1342 519 187 7 7 chr1 99274309 99274444 -97920988 - Lx9 LINE L1 0 7644 7510 3 1342 327 121 0 0 chr1 99274625 99274683 -97920749 + (CTATA)n Simple_repeat Simple_repeat 3 60 0 3 1342 1103 50 0 0 chr1 99274875 99275016 -97920416 + B1_Mm SINE Alu 7 147 0 3 1342 291 54 0 0 chr1 99275027 99275064 -97920368 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1342 203 88 29 0 chr1 99275064 99275098 -97920334 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 3 1342 528 242 47 0 chr1 99275221 99275370 -97920062 - L1M2 LINE L1 -1097 5046 4891 3 1342 2153 169 117 43 chr1 99275381 99276096 -97919336 - RMER17A2 LTR ERVK -15 794 1 3 1342 456 306 74 9 chr1 99276175 99276406 -97919026 - L1M2 LINE L1 -1327 4816 4571 3 1342 6646 172 39 62 chr1 99276430 99278861 -97916571 + Lx3B LINE L1 4659 6967 -6 3 1342 249 270 30 10 chr1 99278882 99278983 -97916449 - L1_Mur3 LINE L1 -1355 4525 4423 3 1342 3551 66 2 0 chr1 99279186 99279626 -97915806 - L1_Mus1 LINE L1 0 6567 6127 3 1342 431 369 55 36 chr1 99279666 99280051 -97915381 - L1M2 LINE L1 -1827 4316 3925 3 1342 1098 233 50 12 chr1 99280061 99280383 -97915049 - Lx2B LINE L1 -5 6995 6662 3 1342 637 232 160 0 chr1 99280643 99280824 -97914608 + B3 SINE B2 1 210 -6 3 1342 2676 45 0 3 chr1 99281775 99282110 -97913322 + L1Md_F2 LINE L1 6249 6582 0 3 1342 330 291 140 21 chr1 99282233 99282419 -97913013 - B3 SINE B2 -8 208 1 3 1342 203 158 0 0 chr1 99282505 99282543 -97912889 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1342 542 277 14 0 chr1 99284014 99284162 -97911270 - B1_Mur4 SINE Alu 0 150 1 3 1342 312 339 95 66 chr1 99284178 99284421 -97911011 + L1M4 LINE L1 5357 5606 -572 3 1342 325 286 11 21 chr1 99284424 99284517 -97910915 + B3A SINE B2 2 93 -105 3 1342 307 303 0 16 chr1 99284662 99284786 -97910646 + L1M2 LINE L1 5708 5829 -471 3 1342 221 265 29 0 chr1 99284872 99284940 -97910492 + (TATG)n Simple_repeat Simple_repeat 2 71 0 3 1342 282 261 33 0 chr1 99285219 99285311 -97910121 + L1_Mur3 LINE L1 5349 5443 -437 3 1342 1148 113 0 94 chr1 99285682 99285906 -97909526 - MusHAL1 LINE L1 -1123 1589 1387 3 1342 10349 184 55 17 chr1 99285904 99288312 -97907120 + L1_Mur2 LINE L1 2799 5296 -581 3 1342 37327 31 2 8 chr1 99288895 99295079 -97900353 - L1Md_A LINE L1 -2 6580 440 3 1342 29 0 0 0 chr1 99295155 99295184 -97900248 + AT_rich Low_complexity Low_complexity 1 29 0 3 1342 5504 132 89 11 chr1 99295256 99296429 -97899003 + Lx LINE L1 5290 6518 -136 3 1342 240 35 0 0 chr1 99296429 99296458 -97898974 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 3 1342 5504 120 83 12 chr1 99296458 99296569 -97898863 + Lx LINE L1 6519 6647 -7 3 1342 25 0 0 0 chr1 99297290 99297315 -97898117 + AT_rich Low_complexity Low_complexity 1 25 0 3 1342 12822 65 2 2 chr1 99297427 99299872 -97895560 - L1Md_F2 LINE L1 -6 6576 4133 3 1342 27 0 0 0 chr1 99300050 99300077 -97895355 + AT_rich Low_complexity Low_complexity 1 27 0 3 1342 655 199 33 7 chr1 99300279 99300431 -97895001 - Lx6 LINE L1 -1526 5934 5779 3 1342 6704 83 15 18 chr1 99300431 99301673 -97893759 - L1_Mus2 LINE L1 0 6566 5328 3 1342 802 286 63 24 chr1 99301797 99302212 -97893220 - L1M2 LINE L1 -1101 5042 4612 3 1342 225 184 0 0 chr1 99303398 99303447 -97891985 + T-rich Low_complexity Low_complexity 5 53 0 3 1342 1080 76 7 0 chr1 99303448 99303592 -97891840 - B1_Mus1 SINE Alu -1 147 3 3 1342 197 65 0 31 chr1 99303947 99303979 -97891453 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1342 2231 143 178 8 chr1 99303998 99304503 -97890929 - Lx2 LINE L1 -84 6913 6300 3 1342 6480 152 25 40 chr1 99304544 99306555 -97888877 - L1_Mus4 LINE L1 -2 6995 5043 3 1342 11242 128 40 2 chr1 99306554 99309264 -97886168 - L1_Mus4 LINE L1 -2854 3032 204 3 1342 247 315 22 5 chr1 99309262 99309447 -97885985 - L1M2 LINE L1 -1763 4380 4193 3 1342 392 333 42 56 chr1 99310421 99310564 -97884868 - ID_B1 SINE B4 -83 141 1 3 1342 500 240 34 130 chr1 99312268 99312299 -97883133 + B4 SINE B4 64 77 -215 3 1342 1015 88 7 7 chr1 99312299 99312447 -97882985 + B1_Mus1 SINE Alu 1 148 0 3 1342 1034 286 40 47 chr1 99312461 99312865 -97882567 - BGLII_B LTR ERVK -36 405 5 3 1342 2675 190 22 4 chr1 99312978 99313527 -97881905 - Lx LINE L1 0 6654 6096 3 1342 841 89 0 0 chr1 99313527 99313650 -97881782 - Lx2 LINE L1 -1092 5905 5783 3 1342 34867 35 11 11 chr1 99313670 99315320 -97880112 - L1Md_T LINE L1 0 6582 4914 3 1342 228 183 46 77 chr1 99315320 99315385 -97880047 + RMER20A LTR ERVK 186 248 -268 3 1342 34867 35 11 11 chr1 99315385 99319050 -97876382 - L1Md_T LINE L1 0 4913 1203 3 1342 9136 14 1 0 chr1 99319016 99320111 -97875321 - L1Md_Gf LINE L1 -5380 1142 47 3 1342 20784 183 30 8 chr1 99320113 99321458 -97873974 - Lx2 LINE L1 -86 5800 4385 3 1342 5046 52 5 5 chr1 99321458 99322097 -97873335 - L1Md_F3 LINE L1 -2 6582 5944 3 1342 20784 183 30 8 chr1 99322097 99322191 -97873241 - Lx2 LINE L1 -1502 4384 4284 3 1342 180 0 0 0 chr1 99322191 99322211 -97873221 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1342 20784 177 29 8 chr1 99322211 99325318 -97870114 - Lx2 LINE L1 -1603 4283 1155 3 1342 1298 165 0 0 chr1 99325329 99325541 -97869891 - L1VL4 LINE L1 -6063 239 28 3 1342 1395 195 38 81 chr1 99325913 99326024 -97869408 + ORR1B2 LTR MaLR 34 127 -240 3 1342 3409 79 11 4 chr1 99326024 99326483 -97868949 - L1_Mus3 LINE L1 -7 6631 6170 3 1342 1395 195 38 81 chr1 99326483 99326717 -97868715 + ORR1B2 LTR MaLR 128 364 -3 3 1342 443 45 45 0 chr1 99327622 99327688 -97867744 + L1Md_F3 LINE L1 6501 6569 -15 3 1342 306 0 0 0 chr1 99327695 99327729 -97867703 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3 1342 2163 198 26 40 chr1 99327829 99328372 -97867060 - L1_Mur2 LINE L1 -562 5315 4781 3 1342 5454 145 1 31 chr1 99328381 99328867 -97866565 + Lx LINE L1 5326 5801 -82 3 1342 1081 95 0 13 chr1 99328867 99329016 -97866416 - B1_Mus1 SINE Alu 0 148 2 3 1342 5454 123 1 24 chr1 99329016 99329685 -97865747 + Lx LINE L1 5802 6456 -198 3 1342 207 0 0 0 chr1 99332246 99332269 -97863163 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 3 1342 7750 166 28 6 chr1 99332270 99334233 -97861199 - Lx4A LINE L1 -6 7052 5037 3 1342 2763 157 75 20 chr1 99334227 99335086 -97860346 - Lx2A1 LINE L1 -881 6127 5235 3 1342 3709 175 12 15 chr1 99335084 99335809 -97859623 - Lx2A1 LINE L1 -883 4994 4272 3 1342 352 268 47 87 chr1 99335907 99336079 -97859353 + L1M5 LINE L1 5288 5452 -727 3 1342 457 310 17 25 chr1 99336138 99336257 -97859175 - RLTR18 LTR ERVK 0 616 499 3 1342 444 37 0 0 chr1 99337180 99337234 -97858198 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 1342 429 257 26 41 chr1 99337317 99337512 -97857920 - RLTR18-int LTR ERVK -5167 194 3 3 1342 1051 315 67 87 chr1 99337539 99338168 -97857264 - RLTR18 LTR ERVK 0 616 1 3 1342 598 303 40 10 chr1 99338220 99338420 -97857012 + B3 SINE B2 4 209 -7 3 1342 767 291 9 0 chr1 99338773 99338983 -97856449 - B3 SINE B2 0 216 5 3 1342 248 163 0 0 chr1 99339651 99339694 -97855738 - ID2 SINE ID -38 45 3 3 1342 366 74 0 0 chr1 99340018 99340072 -97855360 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1342 1782 258 55 17 chr1 99340114 99340701 -97854731 - Lx6 LINE L1 -1237 6223 5615 4 1342 2433 220 143 7 chr1 99340695 99341428 -97854004 - Lx6 LINE L1 -429 5451 4619 4 1342 13451 58 2 1 chr1 99341415 99343838 -97851594 - L1Md_F2 LINE L1 0 6582 4158 4 1342 12792 153 180 5 chr1 99343834 99347477 -97847955 + L1Md_F2 LINE L1 2119 6466 -116 4 1342 1682 111 0 0 chr1 99347480 99347732 -97847700 + L1Md_F2 LINE L1 3552 3803 -2080 4 1342 21627 36 4 0 chr1 99347730 99350375 -97845057 + L1Md_F2 LINE L1 2930 5585 -298 4 1342 8129 41 2 3 chr1 99350376 99351373 -97844059 + L1Md_F2 LINE L1 5587 6582 0 4 167 13950 90 22 1 chr1 99351375 99353445 -97841987 + L1Md_F2 LINE L1 3812 5931 -651 4 1343 225 284 0 69 chr1 99353445 99353532 -97841900 + B4 SINE B4 2 82 -210 4 1343 4704 78 2 2 chr1 99353533 99354147 -97841285 + L1_Mus1 LINE L1 5954 6567 0 4 1343 806 83 8 0 chr1 99354180 99354300 -97841132 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 1343 3297 207 96 11 chr1 99354300 99355168 -97840264 - L1_Mur3 LINE L1 -1508 4372 3429 4 1343 360 0 0 0 chr1 99355179 99355219 -97840213 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1343 621 213 63 6 chr1 99355718 99355893 -97839539 + Lx9 LINE L1 7333 7517 -127 4 1343 257 262 81 11 chr1 99355885 99356059 -97839373 + Lx9 LINE L1 7458 7643 -1 4 1343 261 0 0 0 chr1 99357158 99357187 -97838245 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1343 318 267 118 32 chr1 99357353 99357446 -97837986 - PB1D10 SINE Alu 0 127 27 4 1343 530 279 8 24 chr1 99357737 99357862 -97837570 + RSINE1 SINE B4 3 125 -40 4 1343 210 171 0 0 chr1 99357874 99357915 -97837517 + CT-rich Low_complexity Low_complexity 6 46 0 4 1343 516 106 0 0 chr1 99357927 99358012 -97837420 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1343 482 348 20 5 chr1 99359005 99359204 -97836228 + ID_B1 SINE B4 21 222 -2 4 1343 425 320 16 0 chr1 99359297 99359422 -97836010 + B1_Mur1 SINE Alu 2 128 -21 4 1343 7340 143 20 26 chr1 99359939 99361825 -97833607 - Lx3C LINE L1 -135 6841 4966 4 1343 4413 162 36 10 chr1 99361827 99362693 -97832739 + Lx3C LINE L1 4070 4957 -929 4 1343 1440 246 36 3 chr1 99362766 99363096 -97832336 + Lx5 LINE L1 6584 6924 -126 4 1343 493 61 12 12 chr1 99363238 99363321 -97832111 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 4 1343 1261 297 82 12 chr1 99364670 99365099 -97830333 - Lx8 LINE L1 -801 6672 6214 4 1343 236 289 0 0 chr1 99365724 99365776 -97829656 + Tigger7 DNA MER2_type 614 665 -1826 4 1343 317 275 12 48 chr1 99365862 99365946 -97829486 + Tigger7 DNA MER2_type 2404 2484 -7 4 1343 320 178 0 14 chr1 99366276 99366350 -97829082 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1343 34 42 0 0 chr1 99366573 99366621 -97828811 + AT_rich Low_complexity Low_complexity 1 48 0 4 1343 1389 235 39 36 chr1 99366894 99367283 -97828149 + ORR1B1 LTR MaLR 3 392 -2 4 1343 2052 217 75 13 chr1 99367283 99367830 -97827602 + ORR1B1-int LTR MaLR 3 583 -926 4 1343 857 147 5 146 chr1 99367831 99368030 -97827402 + L1_Mus4 LINE L1 4690 4860 -1023 4 1343 6935 128 22 9 chr1 99368030 99369563 -97825869 + L1_Mus4 LINE L1 5066 6626 -10 4 1343 26 30 0 0 chr1 99369571 99369604 -97825828 + AT_rich Low_complexity Low_complexity 1 33 0 4 1343 2814 231 99 34 chr1 99369604 99370185 -97825247 + ORR1B1-int LTR MaLR 611 1241 -268 4 1343 507 33 0 0 chr1 99370185 99370246 -97825186 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1343 2814 231 99 34 chr1 99370246 99370508 -97824924 + ORR1B1-int LTR MaLR 1242 1509 0 4 1343 1976 217 16 0 chr1 99370508 99370886 -97824546 + ORR1B1 LTR MaLR 11 394 0 4 1343 321 310 32 12 chr1 99371414 99371680 -97823752 + L1M3d LINE L1 1358 1635 -4646 4 1343 595 366 80 75 chr1 99372164 99372868 -97822564 - MTE-int LTR MaLR -48 1532 826 4 1343 399 333 67 31 chr1 99372947 99373142 -97822290 - MLT-int LTR MaLR -986 749 548 4 1343 2603 101 37 0 chr1 99373595 99373708 -97821724 - BGLII LTR ERVK 0 421 307 4 1343 3414 159 62 42 chr1 99373708 99374501 -97820931 - RMER17D2 LTR ERVK 0 809 1 4 1343 2603 101 37 0 chr1 99374501 99374793 -97820639 - BGLII LTR ERVK -115 306 2 4 1343 21 57 0 0 chr1 99375017 99375052 -97820380 + AT_rich Low_complexity Low_complexity 1 35 0 4 1343 5483 263 61 59 chr1 99375804 99377287 -97818145 - Lx6 LINE L1 -30 7430 5959 4 1343 1796 170 24 43 chr1 99377287 99377661 -97817771 + ORR1B2 LTR MaLR 1 367 0 4 1343 6161 239 40 46 chr1 99377661 99377808 -97817624 - Lx6 LINE L1 -1502 5958 5785 4 1343 581 207 84 51 chr1 99377808 99377986 -97817446 - B2_Mm2 SINE B2 -11 184 1 4 1343 6161 226 28 39 chr1 99377986 99378388 -97817044 - Lx6 LINE L1 -96 5784 5396 4 1343 2364 24 10 7 chr1 99378388 99378679 -97816753 + L1Md_F3 LINE L1 6290 6581 -3 4 1343 6161 226 28 39 chr1 99378679 99379835 -97815597 - Lx6 LINE L1 -485 5395 4243 4 1343 4632 107 23 19 chr1 99379852 99380679 -97814753 - L1_Mus3 LINE L1 -6 6632 5735 4 1343 16704 158 21 9 chr1 99380679 99384376 -97811056 - L1VL4 LINE L1 -1584 4299 562 4 1343 1973 169 0 3 chr1 99384614 99384941 -97810491 - ORR1A3 LTR MaLR 0 326 1 4 1343 301 359 10 0 chr1 99385238 99385341 -97810091 - RSINE1 SINE B4 -59 106 3 4 1343 4705 116 7 24 chr1 99385350 99386100 -97809332 + L1_Mus4 LINE L1 5893 6629 -7 4 1343 27 81 0 0 chr1 99386145 99386207 -97809225 + AT_rich Low_complexity Low_complexity 1 62 0 4 1343 235 152 0 61 chr1 99386499 99386548 -97808884 - L1_Rod LINE L1 -182 5665 5620 4 1343 526 188 18 164 chr1 99386644 99386809 -97808623 + L1VL1 LINE L1 212 352 -6070 4 1343 677 174 16 8 chr1 99386791 99386913 -97808519 + L1Md_F LINE L1 565 687 -5832 4 1343 22295 92 34 8 chr1 99386909 99391419 -97804013 - L1Md_A LINE L1 -835 5048 446 4 1343 468 205 8 0 chr1 99391546 99391673 -97803759 + Lx9 LINE L1 7515 7642 -2 4 1343 25 31 0 0 chr1 99391892 99391924 -97803508 + AT_rich Low_complexity Low_complexity 1 32 0 4 1343 534 114 0 0 chr1 99392224 99392312 -97803120 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1343 310 296 128 5 chr1 99392440 99392701 -97802731 - L1M2 LINE L1 -694 5606 5314 4 1343 317 310 63 0 chr1 99392768 99392898 -97802534 + MT2B LTR ERVL 384 512 -89 4 1343 333 0 0 0 chr1 99392911 99392948 -97802484 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1343 267 128 34 34 chr1 99392974 99393063 -97802369 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1343 268 189 0 0 chr1 99393082 99393135 -97802297 + MT2B LTR ERVL 530 582 -2 4 1343 231 397 114 20 chr1 99393424 99393573 -97801859 - RSINE1 SINE B4 -2 163 1 4 1343 2391 280 124 38 chr1 99393753 99394850 -97800582 + L1_Mur2 LINE L1 3686 4887 -990 4 1343 4217 29 0 0 chr1 99394850 99395332 -97800100 - LTRIS_Mm LTR ERV1 0 482 1 4 1343 2391 251 108 10 chr1 99395332 99395972 -97799460 + L1_Mur2 LINE L1 4888 5605 -275 4 1343 359 244 116 16 chr1 99396246 99396375 -97799057 - Lx7 LINE L1 -1403 6293 6152 4 1343 11472 151 35 18 chr1 99396715 99398924 -97796508 - Lx2 LINE L1 -16 6981 4731 4 1343 4841 78 6 3 chr1 99398924 99399575 -97795857 - L1_Mus3 LINE L1 -3 6635 5983 4 1343 11472 164 18 39 chr1 99399575 99400839 -97794593 - Lx2 LINE L1 -1147 4730 3501 4 1343 11779 81 10 5 chr1 99400839 99403400 -97792032 + L1Md_F2 LINE L1 392 2964 -2919 4 1343 37649 30 5 7 chr1 99403434 99410025 -97785407 - L1Md_A LINE L1 0 6582 6 4 1343 272 54 0 0 chr1 99410026 99410063 -97785369 + MusHAL1 LINE L1 1747 1783 -929 4 1343 17088 74 8 5 chr1 99410061 99412498 -97782934 + L1Md_F2 LINE L1 3141 5586 -297 4 1343 7659 63 10 0 chr1 99412498 99413484 -97781948 + L1Md_F2 LINE L1 5587 6582 0 4 1343 2607 121 19 2 chr1 99413484 99413955 -97781477 - MusHAL1 LINE L1 -392 2320 1842 4 1343 1879 219 134 25 chr1 99414037 99414552 -97780880 - RMER4B LTR ERVK 0 585 15 4 1343 253 228 0 0 chr1 99414558 99414615 -97780817 - MurERV4-int LTR ERVK 0 5260 5204 4 1343 651 201 22 0 chr1 99414608 99414747 -97780685 - MurERV4-int LTR ERVK -175 5085 4944 4 1343 1345 239 21 9 chr1 99414756 99415089 -97780343 - MurERV4-int LTR ERVK -3532 1728 1392 4 1343 869 150 0 0 chr1 99415089 99415216 -97780216 + B1_Mus1 SINE Alu 1 127 -21 4 1343 189 0 0 0 chr1 99415247 99415268 -97780164 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1343 3549 192 49 48 chr1 99415269 99416088 -97779344 - MurERV4-int LTR ERVK -3853 1407 588 4 1343 13669 103 61 19 chr1 99416090 99419336 -97776096 - L1_Mur1 LINE L1 -2483 3403 3 4 1343 355 330 32 5 chr1 99419340 99419529 -97775903 - L1M2 LINE L1 -1763 4380 4187 4 1343 3335 34 3 0 chr1 99419830 99420214 -97775218 - IAPEY_LTR LTR ERVK 0 385 1 4 1343 726 338 57 39 chr1 99420756 99421039 -97774393 - B4 SINE B4 -4 288 1 4 1343 2792 154 18 40 chr1 99422121 99422224 -97773208 - L1_Mur2 LINE L1 -1140 4737 4636 4 1343 399 21 0 0 chr1 99422224 99422272 -97773160 + (TTG)n Simple_repeat Simple_repeat 2 49 0 4 1343 2792 154 18 40 chr1 99422272 99422736 -97772696 - L1_Mur2 LINE L1 -1242 4635 4183 4 1343 31301 85 5 5 chr1 99422750 99427873 -97767559 + L1Md_F2 LINE L1 466 5585 -298 4 1343 7469 68 16 0 chr1 99427874 99428852 -97766580 + L1Md_F2 LINE L1 5587 6580 -2 4 1343 14653 105 22 7 chr1 99428893 99431902 -97763530 - MusHAL1 LINE L1 -1683 4203 1155 4 1343 1270 142 24 0 chr1 99431913 99432125 -97763307 - L1VL4 LINE L1 -6063 239 23 4 1343 469 269 61 20 chr1 99432523 99432671 -97762761 + ORR1B2 LTR MaLR 41 194 -173 4 1343 1921 174 15 5 chr1 99432671 99433080 -97762352 + L1_Mur2 LINE L1 4515 4927 -950 4 1343 3353 88 19 2 chr1 99433080 99433603 -97761829 - L1_Mur1 LINE L1 -1796 4090 3559 4 1343 4615 92 17 0 chr1 99433603 99434241 -97761191 + Lx3_Mus LINE L1 6359 7007 -2 4 1343 1254 158 100 0 chr1 99434253 99434493 -97760939 + Lx LINE L1 6374 6637 -17 4 1343 1046 102 0 0 chr1 99434495 99434632 -97760800 + B1_Mus1 SINE Alu 2 138 -10 4 1343 468 51 0 0 chr1 99434647 99434706 -97760726 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 4 1343 366 295 16 8 chr1 99434789 99434912 -97760520 - B4 SINE B4 -48 244 121 4 1343 435 274 70 147 chr1 99435943 99436255 -97759177 + B4A SINE B4 2 289 -3 4 1343 236 299 57 83 chr1 99438668 99438825 -97756607 - YREP_Mm Unknown Unknown -1478 334 182 4 1343 643 290 7 0 chr1 99438685 99438830 -97756602 + ID_B1 SINE B4 79 224 0 4 1343 429 310 103 87 chr1 99439030 99439341 -97756091 - MTEa LTR MaLR 0 379 64 4 1343 248 220 20 0 chr1 99439354 99439404 -97756028 + RMER15 LTR ERVL 1 51 -524 4 1343 320 244 117 8 chr1 99439610 99439730 -97755702 + RMER15 LTR ERVL 443 575 0 4 1343 357 319 171 40 chr1 99441082 99441457 -97753975 - L1MEe LINE L1 -4427 427 4 4 1343 486 264 116 35 chr1 99441459 99441769 -97753663 + L1MA4 LINE L1 5598 5932 -368 4 1343 535 84 0 0 chr1 99442110 99442193 -97753239 + L1_Mus3 LINE L1 6552 6634 -4 4 1343 25 65 0 0 chr1 99442229 99442275 -97753157 + AT_rich Low_complexity Low_complexity 1 46 0 4 1343 245 29 29 0 chr1 99442397 99442431 -97753001 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1343 439 271 117 9 chr1 99442431 99442458 -97752974 - Lx9 LINE L1 -173 7471 7442 4 1343 218 56 28 0 chr1 99442458 99442494 -97752938 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 4 1343 1736 278 99 34 chr1 99442494 99443280 -97752152 - Lx9 LINE L1 -203 7441 6607 4 1343 2030 149 12 0 chr1 99443280 99443603 -97751829 - ORR1A2 LTR MaLR 0 327 1 4 1343 1736 280 34 43 chr1 99443603 99443665 -97751767 - Lx9 LINE L1 -1038 6606 6543 4 1343 838 238 28 14 chr1 99443662 99443875 -97751557 + L1_Rod LINE L1 2213 2428 -3419 5 1343 3804 235 51 92 chr1 99443894 99444393 -97751039 + L1_Rod LINE L1 3176 3658 -2189 5 1343 207 0 0 0 chr1 99444393 99444416 -97751016 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1343 3804 235 51 92 chr1 99444416 99445083 -97750349 + L1_Rod LINE L1 3659 4313 -1534 5 1343 315 49 0 0 chr1 99445083 99445124 -97750308 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1343 333 0 0 0 chr1 99445124 99445160 -97750272 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1343 270 0 0 0 chr1 99445160 99445189 -97750243 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1343 3804 235 51 92 chr1 99445189 99445810 -97749622 + L1_Rod LINE L1 4314 4891 -956 5 1343 862 197 0 0 chr1 99445819 99445961 -97749471 - B1_Mur1 SINE Alu -7 142 1 5 1343 389 80 0 0 chr1 99447089 99447139 -97748293 + B1_Mus1 SINE Alu 1 50 -98 5 1343 361 343 88 65 chr1 99447276 99447491 -97747941 - MER58A DNA MER1_type -3 221 2 5 1343 299 276 66 0 chr1 99447526 99447602 -97747830 - B1_Mus1 SINE Alu -65 83 3 5 1343 1462 226 62 9 chr1 99448815 99449136 -97746296 + MTD LTR MaLR 72 409 -10 5 1343 258 95 0 0 chr1 99449141 99449183 -97746249 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1343 21 36 0 0 chr1 99449415 99449443 -97745989 + AT_rich Low_complexity Low_complexity 1 28 0 5 1343 216 254 27 40 chr1 99450768 99450854 -97744578 - L2a LINE L2 0 3426 3291 5 1343 7449 64 6 1 chr1 99452402 99453847 -97741585 + L1_Mus1 LINE L1 5117 6567 0 5 1343 456 222 6 33 chr1 99453851 99454023 -97741409 + GA-rich Low_complexity Low_complexity 2 168 0 5 1343 690 35 0 0 chr1 99454023 99454108 -97741324 + (GGA)n Simple_repeat Simple_repeat 3 87 0 5 1343 756 177 7 14 chr1 99454385 99454528 -97740904 + B1_Mur3 SINE Alu 5 146 -3 5 1343 1410 17 17 0 chr1 99454530 99454707 -97740725 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1343 234 0 0 0 chr1 99454708 99454734 -97740698 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1343 787 190 134 0 chr1 99454776 99454955 -97740477 - MT2A LTR ERVL -17 516 314 5 1343 2084 81 10 7 chr1 99455165 99455475 -97739957 - L1_Mus3 LINE L1 0 6638 6328 5 1343 4330 79 1 7 chr1 99455473 99456157 -97739275 - L1_Mus3 LINE L1 -453 6185 5506 5 1343 513 318 95 12 chr1 99456242 99456484 -97738948 + MER63D DNA AcHobo 180 441 -620 5 1343 1388 246 63 12 chr1 99456519 99456852 -97738580 - MTEb LTR MaLR -8 371 22 5 1343 202 0 0 83 chr1 99456860 99456896 -97738536 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 1343 2442 74 21 3 chr1 99456909 99457247 -97738185 - L1_Mus1 LINE L1 0 6567 6224 5 1343 240 302 91 45 chr1 99457308 99457506 -97737926 + MER63D DNA AcHobo 772 978 -83 5 1343 758 187 15 0 chr1 99458187 99458321 -97737111 + B1_Mur4 SINE Alu 10 145 -5 5 1343 3936 125 54 48 chr1 99458333 99459022 -97736410 + RMER19A LTR ERVK 5 697 -40 5 1343 395 272 0 44 chr1 99460092 99460205 -97735227 + PB1D9 SINE Alu 1 103 -17 5 1343 219 36 0 0 chr1 99460206 99460234 -97735198 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1343 360 0 0 0 chr1 99460234 99460273 -97735159 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1343 237 211 0 0 chr1 99460471 99460528 -97734904 + (ATGGTG)n Simple_repeat Simple_repeat 4 60 0 5 1343 540 300 53 0 chr1 99460537 99460707 -97734725 + MLT2B4 LTR ERVL 5 183 -373 5 1343 309 340 18 42 chr1 99460960 99461126 -97734306 - MIRb SINE MIR -24 244 83 5 1343 2421 46 3 114 chr1 99461843 99462211 -97733221 + ORR1A2 LTR MaLR 1 327 0 5 1343 191 333 24 81 chr1 99462350 99462474 -97732958 - L2c LINE L2 -11 3376 3260 5 1343 24 0 0 0 chr1 99463133 99463157 -97732275 + AT_rich Low_complexity Low_complexity 1 24 0 5 1343 255 61 0 0 chr1 99463290 99463323 -97732109 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1343 29 47 0 0 chr1 99463348 99463391 -97732041 + AT_rich Low_complexity Low_complexity 1 43 0 5 1343 210 143 0 0 chr1 99464162 99464197 -97731235 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1343 513 0 0 0 chr1 99464657 99464714 -97730718 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 5 1343 182 111 0 0 chr1 99464884 99464911 -97730521 - L2 LINE L2 -1066 2353 2327 5 1343 337 337 66 28 chr1 99465140 99465295 -97730137 + MIR SINE MIR 6 163 -99 5 1343 636 38 0 0 chr1 99465382 99465461 -97729971 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1343 496 348 47 81 chr1 99465584 99465906 -97729526 + ORR1E LTR MaLR 14 324 -35 5 1343 221 128 21 0 chr1 99466355 99466402 -97729030 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1343 234 239 0 34 chr1 99466442 99466589 -97728843 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1343 198 0 0 0 chr1 99466705 99466727 -97728705 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 1343 1138 83 0 0 chr1 99466727 99466872 -97728560 - B1_Mus1 SINE Alu -3 145 1 5 1343 270 0 0 0 chr1 99467321 99467351 -97728081 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1343 314 175 12 0 chr1 99468119 99468199 -97727233 + CT-rich Low_complexity Low_complexity 2 82 0 5 1343 222 383 45 11 chr1 99468492 99468669 -97726763 + MIRb SINE MIR 60 242 -26 5 1343 391 323 155 24 chr1 99470497 99470703 -97724729 + MLT1B LTR MaLR 2 234 -156 5 1343 315 0 0 0 chr1 99471271 99471306 -97724126 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1343 441 0 0 0 chr1 99471829 99471878 -97723554 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1343 1241 112 14 14 chr1 99472363 99472572 -97722860 - Lx2A1 LINE L1 -1 7007 6799 5 1343 869 101 94 0 chr1 99472575 99472724 -97722708 + Lx2 LINE L1 6648 6810 -187 5 1343 385 361 36 50 chr1 99473926 99474145 -97721287 - MLT1H LTR MaLR -249 300 85 5 1343 1184 49 0 0 chr1 99474904 99475048 -97720384 + B1_Mm SINE Alu 2 145 -2 5 1343 279 71 0 0 chr1 99475126 99475168 -97720264 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 1343 300 402 75 50 chr1 99475176 99475417 -97720015 + LTR16E2 LTR ERVL 225 471 -97 5 1343 4890 8 0 0 chr1 99475525 99476309 -97719123 - L1Md_T LINE L1 -502 6080 5297 5 1343 4362 8 0 0 chr1 99476309 99476827 -97718605 + L1Md_T LINE L1 6102 6582 0 5 1343 315 0 0 0 chr1 99476850 99476885 -97718547 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1343 1105 306 16 12 chr1 99476926 99477266 -97718166 + L1MC1 LINE L1 73 416 -6092 5 1343 648 0 0 0 chr1 99477266 99477338 -97718094 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1343 1105 306 16 12 chr1 99477338 99477420 -97718012 + L1MC1 LINE L1 417 497 -6011 5 1343 2853 72 13 15 chr1 99477560 99477957 -97717475 + MTB_Mm LTR MaLR 1 396 -11 5 1343 316 179 15 0 chr1 99478112 99478179 -97717253 - L1MCa LINE L1 -5526 982 915 5 1343 325 225 231 16 chr1 99478248 99478555 -97716877 + L1MC1 LINE L1 3053 3425 -2896 5 1343 1269 281 22 13 chr1 99478693 99479053 -97716379 + MTD LTR MaLR 10 360 -61 5 1343 344 168 0 21 chr1 99479065 99479162 -97716270 + (TCTG)n Simple_repeat Simple_repeat 4 98 0 5 1343 898 220 78 29 chr1 99479329 99479745 -97715687 + L1MC1 LINE L1 5361 5795 -713 5 1343 852 271 60 73 chr1 99479786 99480101 -97715331 + ORR1D2 LTR MaLR 60 370 0 5 1343 779 247 22 0 chr1 99480108 99480339 -97715093 + L1MC1 LINE L1 5796 6031 -477 5 1343 534 79 0 0 chr1 99481634 99481710 -97713722 + (TATTG)n Simple_repeat Simple_repeat 3 78 0 5 1343 905 250 28 0 chr1 99481715 99481895 -97713537 - B3 SINE B2 -30 186 2 5 1343 664 172 66 0 chr1 99481974 99482096 -97713336 + B3 SINE B2 1 130 -86 5 1343 24 53 0 0 chr1 99482130 99482168 -97713264 + AT_rich Low_complexity Low_complexity 1 38 0 5 1343 5346 103 0 11 chr1 99482529 99483292 -97712140 - L1Md_F2 LINE L1 -12 6570 5816 5 1344 212 211 14 14 chr1 99483723 99483795 -97711637 + A-rich Low_complexity Low_complexity 4 75 0 5 1344 242 293 76 45 chr1 99484112 99484269 -97711163 - MIR3 SINE MIR -7 201 40 5 1344 227 375 11 1 chr1 99484281 99484390 -97711042 - MLT1B LTR MaLR -15 375 263 5 1344 545 224 10 0 chr1 99484460 99484779 -97710653 + (TG)n Simple_repeat Simple_repeat 1 322 0 5 1344 321 270 172 66 chr1 99484779 99484977 -97710455 - MLT1B LTR MaLR -171 219 1 5 1344 724 279 50 36 chr1 99485634 99485913 -97709519 + B4A SINE B4 10 292 0 5 1344 774 176 0 0 chr1 99487072 99487352 -97708080 + (TG)n Simple_repeat Simple_repeat 1 280 0 5 1344 1029 82 13 6 chr1 99488123 99488282 -97707150 + (TC)n Simple_repeat Simple_repeat 1 160 0 5 1344 271 344 75 37 chr1 99488314 99488477 -97706955 - ID_B1 SINE B4 -47 245 73 5 1344 1954 46 54 0 chr1 99488758 99489017 -97706415 - L1Md_F3 LINE L1 0 6584 6312 5 1344 586 204 138 69 chr1 99490313 99490487 -97704945 - MTD LTR MaLR -12 407 222 5 1344 217 185 31 0 chr1 99490530 99490595 -97704837 + CT-rich Low_complexity Low_complexity 2 68 0 5 1344 229 264 0 19 chr1 99490635 99490689 -97704743 + CT-rich Low_complexity Low_complexity 2 54 0 5 1344 3617 266 35 29 chr1 99490770 99491905 -97703527 - Lx9 LINE L1 -161 7483 6342 5 1344 600 238 153 46 chr1 99492018 99492234 -97703198 - MTD LTR MaLR -177 242 4 5 1344 1932 162 20 3 chr1 99492360 99492712 -97702720 - RLTR15 LTR ERVK 0 359 2 5 1344 268 327 10 29 chr1 99492839 99492943 -97702489 + MLT1B LTR MaLR 285 386 -4 5 1344 226 270 39 29 chr1 99493109 99493212 -97702220 - L1MA9 LINE L1 -21 6291 6188 5 1344 1006 278 61 30 chr1 99493238 99493712 -97701720 - L1MA9 LINE L1 -252 6060 5572 5 1344 395 266 36 79 chr1 99495239 99495378 -97700054 + B1F SINE Alu 8 140 -9 5 1344 339 232 11 95 chr1 99495399 99495494 -97699938 + MLT1B LTR MaLR 228 314 -76 5 1344 339 296 18 44 chr1 99496901 99497014 -97698418 - MLT1B LTR MaLR -8 382 273 5 1344 629 316 32 103 chr1 99498013 99498104 -97697328 + B4 SINE B4 4 81 -211 5 1344 3662 89 42 4 chr1 99498104 99498632 -97696800 - L1_Mus3 LINE L1 -2 6636 6089 5 1344 629 316 32 103 chr1 99498632 99498851 -97696581 + B4 SINE B4 82 292 0 5 1344 33 73 0 0 chr1 99499422 99499490 -97695942 + AT_rich Low_complexity Low_complexity 1 68 0 5 1344 462 265 79 18 chr1 99500061 99500226 -97695206 + Lx8 LINE L1 7178 7352 -121 1 1344 3394 148 41 9 chr1 99501424 99502005 -97693427 + RLTR17 LTR ERVK 1 600 -92 2 1344 324 91 0 0 chr1 99502005 99502049 -97693383 - L1_Mus2 LINE L1 -629 5937 5894 3 1344 1875 75 0 4 chr1 99502077 99502305 -97693127 + L1_Mus2 LINE L1 6340 6566 0 4 1344 21 36 0 0 chr1 99502305 99502333 -97693099 + AT_rich Low_complexity Low_complexity 1 28 0 5 1344 247 162 385 36 chr1 99502333 99502416 -97693016 + RLTR17 LTR ERVK 581 692 0 2 1344 222 324 14 0 chr1 99502461 99502532 -97692900 + ID4 SINE ID 12 83 0 6 1344 288 263 127 6 chr1 99502873 99503054 -97692378 + L1M2 LINE L1 5118 5316 -830 7 1344 430 163 75 144 chr1 99503063 99503264 -97692168 - Lx9 LINE L1 -1 7643 7457 8 1344 653 226 6 0 chr1 99503265 99503442 -97691990 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 9 1344 3515 253 92 27 chr1 99503443 99504491 -97690941 - Lx9 LINE L1 -127 7517 6402 1 1344 1240 263 157 101 chr1 99504638 99504896 -97690536 - Lx8 LINE L1 -345 7128 6793 1 1344 1014 128 49 7 chr1 99504896 99505038 -97690394 + B1_Mur3 SINE Alu 1 148 -1 1 1344 1240 263 157 101 chr1 99505038 99505422 -97690010 - Lx8 LINE L1 -681 6792 6450 1 1344 424 287 47 43 chr1 99505467 99505690 -97689742 + L1M2 LINE L1 5377 5597 -576 7 1344 515 336 62 0 chr1 99505739 99505965 -97689467 + Tigger5 DNA MER2_type 1 240 -2166 1 1344 238 246 116 0 chr1 99506049 99506118 -97689314 + L1M2 LINE L1 5643 5719 -459 7 1344 498 207 134 40 chr1 99506131 99506378 -97689054 + L1M3 LINE L1 4307 4576 -1564 1 1344 585 287 7 7 chr1 99506398 99506542 -97688890 + B1F1 SINE Alu 1 144 -5 1 1344 196 339 144 43 chr1 99506942 99507380 -97688052 + L2 LINE L2 2367 2848 -571 1 1344 36 23 0 0 chr1 99508950 99508993 -97686439 + AT_rich Low_complexity Low_complexity 1 43 0 1 1344 611 255 40 111 chr1 99509207 99509432 -97686000 - B3 SINE B2 -6 210 2 1 1344 24 32 0 0 chr1 99509438 99509469 -97685963 + AT_rich Low_complexity Low_complexity 1 31 0 1 1344 528 283 20 20 chr1 99509943 99510091 -97685341 + RSINE1 SINE B4 18 165 0 2 1344 261 328 35 9 chr1 99512211 99512325 -97683107 + L2c LINE L2 3049 3165 -222 2 1344 605 285 91 44 chr1 99513059 99513407 -97682025 + MLT1A1 LTR MaLR 1 406 -2 2 1344 254 367 113 43 chr1 99513530 99513715 -97681717 + MLT1K LTR MaLR 30 227 -368 2 1344 420 309 87 89 chr1 99513904 99514273 -97681159 - ORR1E LTR MaLR -4 370 3 2 1344 201 121 0 0 chr1 99514613 99514646 -97680786 + (GGA)n Simple_repeat Simple_repeat 2 34 0 2 1344 180 0 0 0 chr1 99514664 99514684 -97680748 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1344 1996 214 63 28 chr1 99515517 99516026 -97679406 - RLTR11A2 LTR ERVK 0 527 1 2 1344 424 276 101 45 chr1 99516033 99516211 -97679221 - MLT1B LTR MaLR -71 319 132 2 1344 337 337 71 6 chr1 99516212 99516382 -97679050 + MLT1A LTR MaLR 6 186 -188 2 1344 1736 217 73 101 chr1 99516489 99517008 -97678424 - RMER19C LTR ERVK -40 571 1 3 1344 336 261 32 40 chr1 99517037 99517161 -97678271 - RMER15 LTR ERVL -178 397 275 3 1344 286 111 54 36 chr1 99517278 99517334 -97678098 - RMER15 LTR ERVL -518 57 1 3 1344 314 328 16 16 chr1 99517334 99517458 -97677974 + MLT1A LTR MaLR 176 299 -66 2 1344 243 0 0 0 chr1 99517485 99517512 -97677920 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 3 1344 372 167 92 82 chr1 99517528 99517626 -97677806 - B1F SINE Alu -45 104 6 3 1344 414 0 0 0 chr1 99517654 99517700 -97677732 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1344 1254 55 7 0 chr1 99517921 99518067 -97677365 - B1_Mm SINE Alu 0 147 1 3 1344 23 33 0 0 chr1 99518067 99518097 -97677335 + AT_rich Low_complexity Low_complexity 1 30 0 3 1344 659 298 146 31 chr1 99518217 99518857 -97676575 + L1MC3 LINE L1 6887 7822 -173 3 1344 207 0 0 0 chr1 99519169 99519192 -97676240 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1344 206 275 14 0 chr1 99520466 99520487 -97674945 + polypyrimidine Low_complexity Low_complexity 51 71 0 4 1344 315 0 0 0 chr1 99520487 99520522 -97674910 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1344 206 275 14 0 chr1 99520522 99520569 -97674863 + polypyrimidine Low_complexity Low_complexity 3 50 0 4 1344 198 167 0 0 chr1 99520569 99520605 -97674827 + CT-rich Low_complexity Low_complexity 1 36 0 4 1344 267 152 0 0 chr1 99521636 99521682 -97673750 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1344 180 0 0 0 chr1 99521720 99521740 -97673692 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1344 377 111 0 0 chr1 99521771 99521825 -97673607 - HAL1-3A_ME LINE L1 -831 2027 1974 4 1344 354 189 132 11 chr1 99521868 99521959 -97673473 - HAL1-3A_ME LINE L1 -831 2027 1926 4 1344 480 257 151 37 chr1 99523075 99523293 -97672139 - Lx8 LINE L1 -257 7216 6974 4 1344 497 303 35 0 chr1 99523728 99523870 -97671562 - RSINE1 SINE B4 -15 150 4 4 1344 391 282 135 11 chr1 99524127 99524265 -97671167 - L2a LINE L2 0 3426 3249 4 1344 524 15 15 0 chr1 99524337 99524402 -97671030 + (TAGG)n Simple_repeat Simple_repeat 3 68 0 5 1344 186 167 0 0 chr1 99526600 99526630 -97668802 + L3 LINE CR1 2116 2145 -2344 5 1344 2352 141 158 32 chr1 99528007 99528475 -97666957 + RMER4B LTR ERVK 59 585 0 5 1344 205 191 24 0 chr1 99528633 99528675 -97666757 + GA-rich Low_complexity Low_complexity 3 45 0 5 1344 346 314 95 0 chr1 99528685 99528790 -97666642 - RSINE1 SINE B4 -48 117 3 5 1344 364 151 0 27 chr1 99528845 99528920 -97666512 + Lx3C LINE L1 6902 6974 -2 5 1344 552 330 28 37 chr1 99529267 99529377 -97666055 + B4 SINE B4 2 116 -176 5 1344 1695 22 0 0 chr1 99529377 99529558 -97665874 + B2_Mm1a SINE B2 1 181 -12 5 1344 552 330 28 37 chr1 99529558 99529661 -97665771 + B4 SINE B4 117 213 -79 5 1344 1470 213 81 29 chr1 99529942 99530324 -97665108 - RMER5 LTR ERV1 -120 414 13 5 1344 458 96 14 0 chr1 99530408 99530481 -97664951 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1344 22 0 0 0 chr1 99530521 99530543 -97664889 + AT_rich Low_complexity Low_complexity 1 22 0 6 1344 222 280 0 13 chr1 99531662 99531738 -97663694 + CT-rich Low_complexity Low_complexity 1 75 0 6 1344 469 310 94 31 chr1 99531761 99531921 -97663511 - ID_B1 SINE B4 -53 171 2 6 1344 218 344 125 0 chr1 99534571 99534699 -97660733 - MIRb SINE MIR -6 262 119 6 1344 1242 61 0 20 chr1 99535138 99535288 -97660144 - B1_Mus2 SINE Alu 0 147 1 6 1344 884 261 19 15 chr1 99535289 99535495 -97659937 - B3 SINE B2 -9 207 1 6 1344 207 242 0 0 chr1 99536023 99536085 -97659347 + (CATA)n Simple_repeat Simple_repeat 1 62 0 6 1344 192 152 0 0 chr1 99536323 99536356 -97659076 + GA-rich Low_complexity Low_complexity 1 33 0 6 1344 550 193 14 7 chr1 99536419 99536560 -97658872 + (CATATA)n Simple_repeat Simple_repeat 1 142 0 6 1344 936 179 138 0 chr1 99537526 99537721 -97657711 - URR1A DNA MER1_type -4 222 1 6 1344 288 0 0 0 chr1 99538588 99538620 -97656812 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1344 1262 85 0 0 chr1 99539378 99539543 -97655889 + B2_Mm2 SINE B2 1 165 -30 7 1344 563 98 0 11 chr1 99539556 99539649 -97655783 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 7 1344 681 256 52 13 chr1 99540262 99540416 -97655016 - RSINE1 SINE B4 -4 161 2 7 1344 23 54 0 0 chr1 99541777 99541814 -97653618 + AT_rich Low_complexity Low_complexity 1 37 0 7 1344 561 255 141 0 chr1 99543713 99543897 -97651535 + B3 SINE B2 5 214 -2 7 1344 669 47 0 0 chr1 99544978 99545063 -97650369 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1344 180 0 0 0 chr1 99545181 99545201 -97650231 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1344 2570 98 73 21 chr1 99545766 99546150 -97649282 - Lx2 LINE L1 -2 6995 6592 7 1344 531 0 0 0 chr1 99546524 99546583 -97648849 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1344 222 206 219 16 chr1 99546673 99546737 -97648695 - ID4_ SINE ID -4 79 3 8 1344 249 279 0 32 chr1 99547097 99547160 -97648272 + B4 SINE B4 205 265 -27 8 1344 642 13 0 0 chr1 99547162 99547237 -97648195 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1344 435 196 0 0 chr1 99547252 99547385 -97648047 + GA-rich Low_complexity Low_complexity 2 134 0 8 1344 324 0 0 0 chr1 99548110 99548146 -97647286 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1344 260 276 52 0 chr1 99548420 99548478 -97646954 - B4 SINE B4 -224 68 8 8 1344 395 264 76 28 chr1 99548777 99548921 -97646511 + B3 SINE B2 66 216 0 8 1344 478 285 120 14 chr1 99549262 99549693 -97645739 + L1ME1 LINE L1 5574 6071 -1924 8 1344 493 259 116 39 chr1 99550152 99550333 -97645099 + B3A SINE B2 4 198 0 8 1344 276 30 0 0 chr1 99551956 99551989 -97643443 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1344 252 378 25 86 chr1 99552045 99552207 -97643225 - RSINE1 SINE B4 0 165 14 9 1344 421 352 44 32 chr1 99552182 99552434 -97642998 - B4A SINE B4 -36 256 2 9 1344 360 175 48 0 chr1 99553612 99553738 -97641694 + (CA)n Simple_repeat Simple_repeat 2 133 0 9 1344 1447 178 3 13 chr1 99553786 99554065 -97641367 + MTC LTR MaLR 127 413 -8 9 1344 297 0 0 0 chr1 99557112 99557145 -97638287 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1344 513 0 0 0 chr1 99557145 99557201 -97638231 + (GA)n Simple_repeat Simple_repeat 2 58 0 9 1344 240 167 0 0 chr1 99557926 99557974 -97637458 + (CCCG)n Simple_repeat Simple_repeat 3 50 0 9 1344 219 217 0 0 chr1 99558582 99558628 -97636804 + C-rich Low_complexity Low_complexity 1 46 0 9 1344 185 0 0 39 chr1 99558948 99558974 -97636458 + (TAA)n Simple_repeat Simple_repeat 3 27 0 9 1344 448 247 52 23 chr1 99559038 99559175 -97636257 - PB1D7 SINE Alu -21 129 2 9 1344 228 313 0 78 chr1 99559095 99559185 -97636247 - B4 SINE B4 -129 163 81 1 1344 478 247 83 17 chr1 99559889 99560070 -97635362 + L5 LINE RTE 2065 2257 -8 1 1344 560 71 0 0 chr1 99560378 99560448 -97634984 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 1 1344 828 152 6 12 chr1 99560448 99560615 -97634817 + GA-rich Low_complexity Low_complexity 1 166 0 1 1344 477 0 0 0 chr1 99561434 99561487 -97633945 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 1344 857 182 0 33 chr1 99561487 99561629 -97633803 - B1_Mur1 SINE Alu -11 138 1 1 1344 8813 34 2 8 chr1 99562043 99563045 -97632387 + L1Md_F2 LINE L1 5587 6582 0 1 1344 267 289 0 84 chr1 99563544 99563627 -97631805 + MER63D DNA AcHobo 310 385 -676 1 1344 252 260 0 25 chr1 99563802 99563818 -97631614 + A-rich Low_complexity Low_complexity 3 18 0 1 1344 912 151 13 20 chr1 99563818 99563967 -97631465 + B1_Mur4 SINE Alu 1 148 -2 1 1344 252 260 0 25 chr1 99563967 99563984 -97631448 + A-rich Low_complexity Low_complexity 19 35 0 1 1344 2965 156 76 11 chr1 99563984 99564511 -97630921 + RLTR31_Mm LTR ERVK 1 561 0 1 1344 252 260 0 25 chr1 99564511 99564555 -97630877 + A-rich Low_complexity Low_complexity 36 78 0 1 1344 209 176 0 0 chr1 99564853 99564887 -97630545 + GA-rich Low_complexity Low_complexity 3 36 0 1 1344 1479 304 90 52 chr1 99564893 99566141 -97629291 + L1MDa LINE L1 1245 2539 -4094 1 1344 513 293 157 16 chr1 99566168 99566660 -97628772 + L1MDa LINE L1 2613 3173 -3364 1 1344 477 0 0 0 chr1 99566667 99566720 -97628712 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1344 394 141 12 25 chr1 99567874 99567954 -97627478 - L1Md_F2 LINE L1 -3 6579 6501 1 1344 719 277 21 37 chr1 99567958 99568149 -97627283 - B3A SINE B2 -10 188 1 1 1344 3676 82 6 4 chr1 99568292 99568767 -97626665 - L1_Mus3 LINE L1 0 6638 6163 1 1344 238 216 20 0 chr1 99569669 99569720 -97625712 + GA-rich Low_complexity Low_complexity 2 53 0 1 1344 836 102 0 0 chr1 99570162 99570270 -97625162 + L1Md_F2 LINE L1 5479 5586 -297 1 1344 8174 59 6 9 chr1 99570270 99571254 -97624178 + L1Md_F2 LINE L1 5587 6567 -15 1 1344 323 273 72 40 chr1 99571578 99571794 -97623638 - L1MA5 LINE L1 -368 5932 5649 1 1344 194 105 26 0 chr1 99571835 99571873 -97623559 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1 1344 342 67 0 0 chr1 99572856 99572901 -97622531 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1344 323 211 36 10 chr1 99572909 99573005 -97622427 - L1M5 LINE L1 -545 5617 5519 1 1344 320 275 104 22 chr1 99573184 99573366 -97622066 - L1MD LINE L1 -814 5332 5136 1 1344 267 276 0 0 chr1 99573510 99573586 -97621846 + L1_Mur3 LINE L1 738 813 -6899 1 1344 229 314 81 38 chr1 99573567 99573802 -97621630 + L1_Mur3 LINE L1 510 754 -6958 1 1344 2151 28 0 0 chr1 99573815 99574064 -97621368 + L1Md_F2 LINE L1 5740 5988 -594 1 1344 34650 70 12 12 chr1 99574081 99578404 -97617028 - L1Md_F LINE L1 -43 5840 1501 1 1344 1747 32 0 0 chr1 99578404 99578594 -97616838 - B2_Mm1t SINE B2 -3 190 1 1 1344 34650 118 45 17 chr1 99578594 99579887 -97615545 - L1Md_F LINE L1 -4383 1500 187 1 1344 1947 304 94 35 chr1 99580872 99582369 -97613063 - Lx8 LINE L1 -1042 6431 4837 1 1344 359 252 231 30 chr1 99582457 99582626 -97612806 + Lx8 LINE L1 6600 6802 -671 1 1344 419 270 42 129 chr1 99582682 99582981 -97612451 + RLTR15 LTR ERVK 50 303 -225 1 1344 589 357 14 52 chr1 99583016 99583303 -97612129 + Lx8 LINE L1 7052 7327 -146 1 1344 372 22 0 0 chr1 99583318 99583363 -97612069 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1344 25 51 0 0 chr1 99583476 99583515 -97611917 + AT_rich Low_complexity Low_complexity 1 39 0 1 1344 376 337 87 83 chr1 99583881 99584169 -97611263 - B4 SINE B4 -1 291 3 1 1344 240 217 164 16 chr1 99585141 99585202 -97610230 + ID4_ SINE ID 14 83 0 1 1344 240 59 0 0 chr1 99585252 99585286 -97610146 + (TAAAAA)n Simple_repeat Simple_repeat 6 39 0 1 1344 21 0 0 0 chr1 99585965 99585986 -97609446 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 508 323 117 29 chr1 99585992 99586333 -97609099 - MLT1B LTR MaLR 0 390 20 1 1344 419 264 24 16 chr1 99586354 99586481 -97608951 + MLT1A1 LTR MaLR 277 404 -4 1 1344 450 0 0 0 chr1 99586487 99586537 -97608895 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1344 447 256 111 15 chr1 99586903 99587038 -97608394 + B1_Mur2 SINE Alu 2 149 0 1 1344 265 226 0 0 chr1 99587224 99587277 -97608155 - MIRb SINE MIR -102 166 114 1 1344 1211 65 35 17 chr1 99587697 99587869 -97607563 + L1Md_F2 LINE L1 6407 6581 -1 1 1344 4753 196 54 54 chr1 99588029 99588789 -97606643 - L1_Mur3 LINE L1 -57 5823 5093 1 1344 961 57 43 0 chr1 99588789 99588930 -97606502 + (ATGGTG)n Simple_repeat Simple_repeat 6 152 0 1 1344 4753 196 54 54 chr1 99588930 99589311 -97606121 - L1_Mur3 LINE L1 -788 5092 4672 1 1344 261 0 0 0 chr1 99589311 99589340 -97606092 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1344 4753 196 54 54 chr1 99589340 99589398 -97606034 - L1_Mur3 LINE L1 -1209 4671 4623 1 1344 914 214 9 69 chr1 99589470 99589701 -97605731 - Lx6 LINE L1 -2 7458 7242 1 1344 311 157 0 0 chr1 99589672 99589723 -97605709 + L1_Mur3 LINE L1 5066 5116 -764 1 1344 3207 241 52 26 chr1 99589739 99589802 -97605630 - Lx6 LINE L1 -638 6822 6759 1 1344 240 35 0 0 chr1 99589802 99589831 -97605601 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1 1344 3207 241 52 26 chr1 99589831 99590579 -97604853 - Lx6 LINE L1 -702 6758 5991 1 1344 3607 174 36 55 chr1 99590577 99590918 -97604514 + Lx6 LINE L1 4970 5293 -587 1 1344 1217 109 74 6 chr1 99590918 99591093 -97604339 + B2_Mm2 SINE B2 1 187 -8 1 1344 3607 185 220 45 chr1 99591093 99591649 -97603783 + Lx6 LINE L1 5294 5958 -1502 1 1344 3878 148 16 5 chr1 99591649 99592292 -97603140 - L1_Mur3 LINE L1 -1281 4599 3950 1 1344 1117 216 128 43 chr1 99593354 99593500 -97601932 + ORR1D1 LTR MaLR 1 163 -211 1 1344 180 77 0 0 chr1 99593500 99593526 -97601906 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 1 1344 1117 216 128 43 chr1 99593526 99593707 -97601725 + ORR1D1 LTR MaLR 164 356 -18 1 1344 182 213 36 96 chr1 99593949 99594032 -97601400 + L3 LINE CR1 2142 2219 -2270 1 1344 285 29 0 0 chr1 99594904 99594938 -97600494 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1344 5951 95 45 21 chr1 99595127 99596012 -97599420 + RMER17A2 LTR ERVK 1 906 0 1 1344 330 87 0 0 chr1 99597114 99597160 -97598272 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1344 412 291 9 18 chr1 99597168 99597280 -97598152 + PB1D10 SINE Alu 6 116 -1 1 1344 1886 271 209 34 chr1 99600822 99601615 -97593817 - Lx9 LINE L1 -314 7330 6417 1 1344 189 0 0 0 chr1 99601615 99601636 -97593796 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1344 1886 271 209 34 chr1 99601636 99601821 -97593611 - Lx9 LINE L1 -1228 6416 6180 1 1344 301 320 59 33 chr1 99604695 99604847 -97590585 + L2 LINE L2 2358 2513 -906 1 1344 295 310 49 66 chr1 99605069 99605252 -97590180 + L1MDa LINE L1 570 749 -5778 1 1344 281 278 104 109 chr1 99605314 99605844 -97589588 + L1MDa LINE L1 880 1406 -5121 1 1344 304 323 102 25 chr1 99606115 99606312 -97589120 + L1MDa LINE L1 2339 2550 -4083 1 1344 181 273 261 43 chr1 99607222 99607383 -97588049 - MIRb SINE MIR -8 260 65 1 1344 230 300 0 32 chr1 99607349 99607411 -97588021 - MIRm SINE MIR -178 98 39 1 1344 1248 49 14 0 chr1 99607567 99607711 -97587721 + B1_Mus2 SINE Alu 1 146 -1 1 1344 750 78 0 0 chr1 99607711 99607813 -97587619 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 1 1344 279 350 19 0 chr1 99608565 99608591 -97586841 - ID_B1 SINE B4 -2 222 118 1 1344 326 273 39 0 chr1 99608591 99608668 -97586764 - B1F SINE Alu -33 116 37 1 1344 238 203 16 63 chr1 99608613 99608676 -97586756 - MT2B LTR ERVL -354 247 188 1 1344 389 333 0 32 chr1 99609101 99609225 -97586207 + B1F1 SINE Alu 1 120 0 1 1344 513 84 0 0 chr1 99611704 99611775 -97583657 + (CCA)n Simple_repeat Simple_repeat 3 73 0 1 1344 22 0 0 0 chr1 99612079 99612101 -97583331 + AT_rich Low_complexity Low_complexity 1 22 0 1 1344 232 198 32 42 chr1 99614496 99614591 -97580841 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1345 517 216 103 8 chr1 99615634 99615751 -97579681 + B1_Mur2 SINE Alu 2 129 -20 1 1345 216 0 0 0 chr1 99615757 99615781 -97579651 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1345 23 0 0 0 chr1 99615783 99615806 -97579626 + AT_rich Low_complexity Low_complexity 1 23 0 1 1345 269 329 14 0 chr1 99615989 99616059 -97579373 + PB1D7 SINE Alu 23 93 -27 1 1345 240 86 0 0 chr1 99617864 99617899 -97577533 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1345 660 77 0 0 chr1 99618734 99618825 -97576607 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1345 318 322 34 34 chr1 99619907 99620055 -97575377 - B1F SINE Alu -1 148 1 1 1345 521 272 0 49 chr1 99619926 99620069 -97575363 - ID_B1 SINE B4 -20 204 69 1 1345 22 35 0 0 chr1 99621019 99621048 -97574384 + AT_rich Low_complexity Low_complexity 1 29 0 1 1345 339 268 66 85 chr1 99621133 99621345 -97574087 + L1MEg LINE L1 758 965 -5119 1 1345 37 76 0 0 chr1 99621365 99621444 -97573988 + AT_rich Low_complexity Low_complexity 1 79 0 1 1345 726 201 0 43 chr1 99621980 99622120 -97573312 + B1_Mur1 SINE Alu 7 140 -9 1 1345 423 98 0 0 chr1 99622388 99622449 -97572983 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1345 33 25 0 0 chr1 99623349 99623389 -97572043 + AT_rich Low_complexity Low_complexity 1 40 0 1 1345 570 211 101 44 chr1 99623395 99623554 -97571878 - B3 SINE B2 0 216 49 1 1345 315 0 0 0 chr1 99624625 99624660 -97570772 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1345 1100 57 43 0 chr1 99625020 99625160 -97570272 + B1_Mus2 SINE Alu 2 147 0 1 1345 306 121 12 35 chr1 99625802 99625888 -97569544 + A-rich Low_complexity Low_complexity 2 85 0 1 1345 415 243 0 139 chr1 99627046 99627175 -97568257 + PB1D9 SINE Alu 1 111 -9 1 1345 180 0 0 0 chr1 99627175 99627195 -97568237 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 1 1345 438 20 0 0 chr1 99627195 99627245 -97568187 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 1 1345 261 166 37 12 chr1 99627416 99627488 -97567944 + MTD LTR MaLR 345 421 0 1 1345 1084 48 13 20 chr1 99627743 99627892 -97567540 - B1_Mus1 SINE Alu 0 148 1 1 1345 820 220 104 10 chr1 99628605 99628798 -97566634 + B3 SINE B2 2 212 -4 1 1345 294 241 63 0 chr1 99630183 99630262 -97565170 + L1MC2 LINE L1 6261 6344 0 1 1345 417 264 59 47 chr1 99632918 99633214 -97562218 + L1M2 LINE L1 3492 3786 -2354 2 1345 242 111 208 0 chr1 99633317 99633389 -97562043 + Lx9 LINE L1 7558 7644 0 2 1345 451 323 59 29 chr1 99633413 99633719 -97561713 + L1M2 LINE L1 3937 4251 -1892 2 1345 2565 60 0 3 chr1 99634174 99634506 -97560926 + L1Md_A LINE L1 6252 6582 0 2 1345 466 281 111 10 chr1 99635860 99636058 -97559374 + L1M5 LINE L1 5492 5709 -531 2 1345 1505 95 5 13 chr1 99636068 99636292 -97559140 - L1_Mus1 LINE L1 0 6567 6346 2 1345 198 0 0 0 chr1 99636454 99636476 -97558956 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 2 1345 189 147 0 0 chr1 99636509 99636543 -97558889 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1345 311 0 26 0 chr1 99636544 99636583 -97558849 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1345 380 294 308 17 chr1 99636617 99636890 -97558542 + MTE2a LTR MaLR 20 372 -7 2 1345 21 36 0 0 chr1 99638665 99638693 -97556739 + AT_rich Low_complexity Low_complexity 1 28 0 2 1345 24 77 0 0 chr1 99638874 99638926 -97556506 + AT_rich Low_complexity Low_complexity 1 52 0 2 1345 4806 227 112 43 chr1 99638949 99640448 -97554984 + Lx9 LINE L1 6034 7636 -8 2 1345 198 0 0 0 chr1 99640514 99640536 -97554896 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1345 614 291 79 28 chr1 99640952 99641076 -97554356 + Lx8 LINE L1 7013 7147 -326 2 1345 285 29 0 0 chr1 99641076 99641110 -97554322 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1345 614 291 79 28 chr1 99641110 99641275 -97554157 + Lx8 LINE L1 7148 7317 -156 2 1345 455 257 35 0 chr1 99642104 99642217 -97553215 + PB1D10 SINE Alu 1 117 0 2 1345 254 241 110 44 chr1 99642347 99642438 -97552994 - PB1 SINE Alu -16 111 15 2 1345 447 68 0 0 chr1 99643591 99643650 -97551782 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1345 1583 27 27 0 chr1 99644307 99644493 -97550939 + B2_Mm1a SINE B2 1 191 -2 2 1345 495 241 244 25 chr1 99644913 99645151 -97550281 + B4 SINE B4 2 291 -1 2 1345 183 153 16 48 chr1 99645201 99645263 -97550169 + CT-rich Low_complexity Low_complexity 5 64 0 2 1345 192 40 0 0 chr1 99645265 99645290 -97550142 + (CATA)n Simple_repeat Simple_repeat 1 25 0 2 1345 378 0 0 0 chr1 99645350 99645392 -97550040 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1345 1131 43 0 21 chr1 99645394 99645538 -97549894 - B1_Mus1 SINE Alu -7 141 1 2 1345 434 102 0 14 chr1 99647318 99647388 -97548044 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1345 242 280 104 52 chr1 99647994 99648186 -97547246 + Charlie4a DNA MER1_type 232 433 -75 2 1345 1113 82 0 7 chr1 99648192 99648340 -97547092 + B1_Mus1 SINE Alu 2 148 0 2 1345 1456 72 0 20 chr1 99648401 99648600 -97546832 + B2_Mm2 SINE B2 1 195 0 2 1345 234 296 42 0 chr1 99648608 99648619 -97546813 + B4 SINE B4 2 75 -217 2 1345 264 300 0 0 chr1 99648619 99648679 -97546753 + ID4 SINE ID 15 74 -9 2 1345 330 417 18 9 chr1 99648789 99649007 -97546425 + Tigger5 DNA MER2_type 15 234 -2172 2 1345 408 242 61 0 chr1 99649092 99649191 -97546241 - B1F SINE Alu -44 105 1 2 1345 438 268 55 80 chr1 99649617 99649816 -97545616 + B3A SINE B2 1 194 -4 2 1345 547 272 44 0 chr1 99650194 99650330 -97545102 - B3 SINE B2 -2 214 73 2 1345 331 179 54 0 chr1 99650517 99650573 -97544859 - B3A SINE B2 -138 60 2 2 1345 572 289 84 15 chr1 99650984 99651258 -97544174 + ORR1D2 LTR MaLR 2 294 -76 2 1345 570 164 0 0 chr1 99651285 99651407 -97544025 + CT-rich Low_complexity Low_complexity 1 122 0 2 1345 286 214 0 0 chr1 99651415 99651471 -97543961 + ORR1D2 LTR MaLR 306 361 -9 2 1345 243 279 35 81 chr1 99651909 99651995 -97543437 + ID2 SINE ID 2 83 0 2 1345 405 263 51 0 chr1 99652010 99652128 -97543304 + Lx9 LINE L1 7325 7448 -196 2 1345 535 243 35 21 chr1 99652192 99652335 -97543097 - B1F SINE Alu -1 148 4 2 1345 233 306 142 24 chr1 99652467 99652594 -97542838 - MTE2a LTR MaLR -65 314 173 2 1345 219 268 0 14 chr1 99653929 99654001 -97541431 + A-rich Low_complexity Low_complexity 1 71 0 2 1345 235 231 0 0 chr1 99655599 99655651 -97539781 + L1ME4a LINE L1 5969 6020 -104 2 1345 1087 49 21 7 chr1 99656111 99656256 -97539176 + B1_Mus1 SINE Alu 2 148 0 2 1345 189 74 0 0 chr1 99658004 99658031 -97537401 + (TCC)n Simple_repeat Simple_repeat 2 28 0 2 1345 2634 38 0 6 chr1 99659503 99659825 -97535607 + L1Md_F2 LINE L1 6251 6570 -12 2 1345 550 140 144 58 chr1 99660413 99660587 -97534845 + B2_Mm2 SINE B2 2 190 -5 2 1345 194 295 148 0 chr1 99661490 99661551 -97533881 + MER5B DNA MER1_type 103 172 -6 2 1345 2414 73 31 0 chr1 99661665 99661982 -97533450 - ORR1A2 LTR MaLR 0 327 1 2 1345 1360 113 0 0 chr1 99661982 99662177 -97533255 - ORR1A2-int LTR MaLR 0 1963 1769 2 1345 1559 62 12 59 chr1 99662176 99662227 -97533205 - MTB LTR MaLR -156 244 196 2 1345 246 32 0 0 chr1 99662227 99662258 -97533174 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 2 1345 1072 74 0 45 chr1 99662263 99662418 -97533014 - B1_Mus1 SINE Alu 0 148 1 2 1345 1559 62 12 59 chr1 99662418 99662616 -97532816 - MTB LTR MaLR -205 195 1 2 1345 307 279 81 0 chr1 99663887 99663973 -97531459 - MER5A DNA MER1_type -95 94 2 2 1345 225 247 137 0 chr1 99664069 99664142 -97531290 + MIRb SINE MIR 178 260 -8 2 1345 21 0 0 0 chr1 99664533 99664554 -97530878 + AT_rich Low_complexity Low_complexity 1 21 0 2 1345 234 319 0 0 chr1 99664606 99664675 -97530757 - Tigger16a DNA Tigger -59 874 806 2 1345 277 290 93 2 chr1 99667866 99668010 -97527422 + MTE2b LTR MaLR 223 376 -3 2 1345 858 330 63 30 chr1 99668025 99668754 -97526678 + L1_Mur3 LINE L1 5119 5871 -9 2 1345 466 224 173 111 chr1 99669627 99669748 -97525684 - L1MB2 LINE L1 -181 5990 5853 2 1345 1219 54 0 0 chr1 99669748 99669895 -97525537 - B1_Mm SINE Alu 0 147 1 2 1345 466 224 173 111 chr1 99669895 99670044 -97525388 - L1MB2 LINE L1 -319 5852 5703 2 1345 215 286 14 41 chr1 99670067 99670140 -97525292 + L2a LINE L2 3293 3363 -63 2 1345 774 114 30 8 chr1 99670163 99670295 -97525137 - B1_Mus2 SINE Alu 0 147 13 2 1345 445 235 49 56 chr1 99670295 99670323 -97525109 - ID_B1 SINE B4 0 222 64 2 1345 235 303 25 38 chr1 99670366 99670445 -97524987 - ID SINE ID -144 80 3 2 1345 336 264 54 21 chr1 99670563 99670656 -97524776 + PB1D10 SINE Alu 7 102 -15 2 1345 270 224 141 26 chr1 99670761 99670839 -97524593 - MTD LTR MaLR -332 87 1 2 1345 3242 82 19 4 chr1 99671179 99671666 -97523766 + L1_Mm LINE L1 4309 4802 -1081 2 1345 387 272 123 17 chr1 99672349 99672493 -97522939 + B3A SINE B2 1 156 -39 2 1345 229 188 0 59 chr1 99672496 99672511 -97522921 + (CG)n Simple_repeat Simple_repeat 2 15 0 2 1345 189 0 0 0 chr1 99672511 99672532 -97522900 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1345 351 0 0 0 chr1 99672532 99672570 -97522862 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1345 229 188 0 59 chr1 99672570 99672604 -97522828 + (CG)n Simple_repeat Simple_repeat 1 33 0 2 1345 21 0 0 0 chr1 99672612 99672633 -97522799 + AT_rich Low_complexity Low_complexity 1 21 0 2 1345 235 289 60 12 chr1 99673192 99673276 -97522156 - L2a LINE L2 0 3426 3339 2 1345 218 32 32 0 chr1 99673493 99673524 -97521908 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1345 874 166 0 27 chr1 99674512 99674661 -97520771 + B1_Mus1 SINE Alu 1 145 -3 2 1345 761 152 0 7 chr1 99674693 99674832 -97520600 + GA-rich Low_complexity Low_complexity 3 140 0 2 1345 1124 88 0 0 chr1 99674835 99674983 -97520449 + B1_Mus1 SINE Alu 1 148 0 2 1345 2541 44 2 230 chr1 99675164 99675669 -97519763 + RLTR10 LTR ERVK 1 390 0 2 1345 15552 22 7 49 chr1 99675703 99677759 -97517673 + RLTR10-int LTR ERVK 16 1984 -3 2 1345 2541 44 2 230 chr1 99677761 99678266 -97517166 + RLTR10 LTR ERVK 1 390 0 2 1345 988 146 167 0 chr1 99678538 99678730 -97516702 - URR1A DNA MER1_type 0 226 3 2 1345 288 0 0 0 chr1 99679038 99679070 -97516362 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1345 23 0 0 0 chr1 99680036 99680059 -97515373 + AT_rich Low_complexity Low_complexity 1 23 0 2 1345 235 239 22 22 chr1 99680120 99680210 -97515222 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 1345 240 397 64 29 chr1 99680568 99680708 -97514724 - MLT1J LTR MaLR -143 369 225 2 1345 21 0 0 0 chr1 99680732 99680753 -97514679 + AT_rich Low_complexity Low_complexity 1 21 0 2 1345 297 0 0 0 chr1 99680820 99680853 -97514579 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 2 1345 180 176 0 0 chr1 99680853 99680887 -97514545 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2 1345 534 281 117 66 chr1 99681944 99682218 -97513214 - B4A SINE B4 -4 288 1 2 1345 300 27 0 0 chr1 99682893 99682930 -97512502 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 2 1345 235 24 49 0 chr1 99683034 99683075 -97512357 - Lx7 LINE L1 0 7696 7654 2 1345 414 195 40 16 chr1 99683077 99683202 -97512230 - Lx7 LINE L1 -16 7680 7553 2 1345 351 0 0 0 chr1 99684946 99684985 -97510447 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1345 952 313 139 34 chr1 99685601 99686047 -97509385 - MLT1D LTR MaLR 0 505 13 2 1345 561 274 29 29 chr1 99686338 99686501 -97508931 + RLTR18 LTR ERVK 94 256 -360 2 1345 1233 80 6 0 chr1 99686501 99686664 -97508768 + B2_Mm2 SINE B2 2 165 -30 2 1345 390 91 39 0 chr1 99686666 99686743 -97508689 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1345 516 32 0 0 chr1 99686765 99686827 -97508605 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 2 1345 225 0 0 0 chr1 99686960 99686985 -97508447 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1345 1215 41 0 0 chr1 99686985 99687132 -97508300 - B1_Mus2 SINE Alu 0 147 1 2 1345 1339 250 25 31 chr1 99687132 99687458 -97507974 + RLTR18B LTR ERVK 189 512 0 2 1345 270 305 0 0 chr1 99688499 99688558 -97506874 - B1_Mur3 SINE Alu -86 63 5 2 1345 1229 48 0 0 chr1 99688659 99688806 -97506626 + B1_Mus2 SINE Alu 1 147 0 2 1345 21 0 0 0 chr1 99688806 99688827 -97506605 + AT_rich Low_complexity Low_complexity 1 21 0 3 1345 186 71 0 0 chr1 99689591 99689619 -97505813 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1345 458 299 68 55 chr1 99689634 99689797 -97505635 - B3A SINE B2 -14 202 38 3 1345 389 260 29 0 chr1 99690199 99690303 -97505129 - MLT1I LTR MaLR 0 411 305 3 1345 281 349 43 15 chr1 99690730 99690890 -97504542 + MTE2a LTR MaLR 38 182 -237 3 1345 627 206 40 0 chr1 99690883 99691009 -97504423 + ORR1D-int LTR MaLR 524 654 -716 3 1345 297 209 318 0 chr1 99691362 99691472 -97503960 - RMER15 LTR ERVL -154 421 277 3 1345 1123 199 144 15 chr1 99691833 99692167 -97503265 + MTC LTR MaLR 53 413 -8 3 1345 2683 125 19 57 chr1 99692248 99692753 -97502679 + RLTR1D LTR ERV1 1 589 -16 3 1345 322 330 26 35 chr1 99692771 99692887 -97502545 - RSINE1 SINE B4 -43 122 8 3 1345 581 262 109 31 chr1 99692978 99693364 -97502068 + L1MA9 LINE L1 4970 5385 -755 3 1345 943 283 42 149 chr1 99693426 99693741 -97501691 + MT2A LTR ERVL 16 276 -257 3 1345 1307 99 16 5 chr1 99693741 99693934 -97501498 - B2_Mm2 SINE B2 0 195 1 3 1345 943 283 42 149 chr1 99693934 99694100 -97501332 + MT2A LTR ERVL 277 445 -88 3 1345 270 56 0 0 chr1 99694101 99694137 -97501295 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1345 264 246 14 14 chr1 99694147 99694221 -97501211 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 3 1345 414 100 0 0 chr1 99694248 99694308 -97501124 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1345 384 275 87 48 chr1 99694439 99694811 -97500621 + L1MA9 LINE L1 5753 6145 -167 3 1345 186 43 0 0 chr1 99694909 99694932 -97500500 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 1345 1231 50 0 18 chr1 99694932 99695095 -97500337 - B2_Mm2 SINE B2 -34 161 2 3 1345 1252 75 0 6 chr1 99695214 99695376 -97500056 + B2_Mm2 SINE B2 1 161 -34 3 1345 369 0 0 0 chr1 99695376 99695417 -97500015 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 1345 288 170 0 0 chr1 99695419 99695472 -97499960 + GA-rich Low_complexity Low_complexity 2 54 0 3 1345 894 325 163 81 chr1 99695713 99695850 -97499582 - MTE-int LTR MaLR -19 1561 1418 3 1345 1123 82 7 0 chr1 99695850 99695997 -97499435 + B1_Mus1 SINE Alu 1 148 0 3 1345 894 325 163 81 chr1 99695997 99696553 -97498879 - MTE-int LTR MaLR -163 1417 811 3 1345 2722 141 100 91 chr1 99696558 99697228 -97498204 + RMER6C LTR ERVK 3 678 -12 3 1345 1686 93 46 19 chr1 99697298 99697560 -97497872 + Lx LINE L1 6379 6647 -7 3 1345 21 36 0 0 chr1 99697560 99697588 -97497844 + AT_rich Low_complexity Low_complexity 1 28 0 3 1345 250 295 52 21 chr1 99698167 99698264 -97497168 + PB1D10 SINE Alu 18 117 0 3 1345 205 118 39 0 chr1 99698264 99698315 -97497117 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 1345 260 293 26 14 chr1 99698328 99698409 -97497023 + ID4 SINE ID 11 91 -61 3 1345 308 350 40 0 chr1 99698757 99698857 -97496575 - Zaphod DNA Tip100 0 4031 3928 3 1345 195 328 120 48 chr1 99699519 99699644 -97495788 - L2a LINE L2 0 3426 3293 3 1345 1166 116 16 21 chr1 99699916 99699952 -97495480 - B2_Mm2 SINE B2 -2 193 156 3 1345 414 0 0 0 chr1 99699952 99699998 -97495434 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 3 1345 1166 116 16 21 chr1 99699998 99700155 -97495277 - B2_Mm2 SINE B2 -40 155 1 3 1345 957 296 77 4 chr1 99700252 99700811 -97494621 - L1_Mur3 LINE L1 -1551 4329 3730 3 1345 1938 281 66 27 chr1 99700804 99701944 -97493488 - L1_Mur3 LINE L1 -2582 3298 2115 3 1345 7127 65 12 29 chr1 99701963 99702683 -97492749 - L1Md_F2 LINE L1 -1 6581 5875 3 1345 1223 48 0 0 chr1 99702683 99702830 -97492602 - B1_Mm SINE Alu 0 147 1 3 1345 7127 66 11 25 chr1 99702830 99703159 -97492273 - L1Md_F2 LINE L1 -708 5874 5549 3 1345 2992 208 38 18 chr1 99703398 99704054 -97491378 - Lx5 LINE L1 -1 7049 6381 3 1345 608 314 58 9 chr1 99704046 99704473 -97490959 - L1_Mur3 LINE L1 -3965 1915 1468 3 1345 1419 60 16 0 chr1 99704615 99704797 -97490635 - B2_Mm2 SINE B2 -9 186 2 3 1345 314 284 84 81 chr1 99705265 99705606 -97489826 - RLTR12B LTR ERVK -246 282 12 3 1345 228 35 0 0 chr1 99706701 99706730 -97488702 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1345 324 0 0 0 chr1 99707255 99707291 -97488141 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1345 186 71 0 0 chr1 99707641 99707669 -97487763 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1345 994 62 0 0 chr1 99707669 99707791 -97487641 - B1_Mus1 SINE Alu -7 141 20 3 1345 6787 53 0 41 chr1 99707793 99708486 -97486946 + L1Md_F2 LINE L1 5709 6382 -200 3 1345 2696 31 25 0 chr1 99708486 99708805 -97486627 - IAPLTR2b LTR ERVK 0 327 1 3 1345 6787 53 0 41 chr1 99708805 99709021 -97486411 + L1Md_F2 LINE L1 6383 6581 -1 3 1345 7540 190 104 96 chr1 99709204 99709758 -97485674 - L1_Mur3 LINE L1 -1598 4282 3673 3 1345 468 0 0 0 chr1 99709758 99709810 -97485622 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 3 1345 7540 190 104 96 chr1 99709810 99709831 -97485601 - L1_Mur3 LINE L1 -2208 3672 3581 3 1345 252 0 0 0 chr1 99709831 99709859 -97485573 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 3 1345 7540 190 104 96 chr1 99709859 99712276 -97483156 - L1_Mur3 LINE L1 -2300 3580 1269 3 1345 1020 75 138 0 chr1 99712276 99712435 -97482997 - B2_Mm2 SINE B2 -14 181 1 3 1345 7540 250 56 65 chr1 99712435 99713340 -97482092 - L1_Mur3 LINE L1 -4612 1268 364 3 1345 528 45 0 0 chr1 99713835 99713902 -97481530 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1345 339 276 65 8 chr1 99713905 99714029 -97481403 - Lx9 LINE L1 -231 7413 7283 3 1345 704 296 78 83 chr1 99714253 99714805 -97480627 - Lx8 LINE L1 -794 6679 6131 3 1345 200 139 28 0 chr1 99715773 99715809 -97479623 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1345 190 313 55 92 chr1 99715943 99716052 -97479380 + MER5B DNA MER1_type 1 105 -73 3 1345 279 0 0 0 chr1 99718022 99718053 -97477379 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1345 198 0 0 0 chr1 99718688 99718710 -97476722 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1345 204 40 0 0 chr1 99719164 99719189 -97476243 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 3 1345 1973 40 0 20 chr1 99719195 99719447 -97475985 - L1Md_F2 LINE L1 -13 6569 6323 3 1345 513 121 0 0 chr1 99719578 99719661 -97475771 + (A)n Simple_repeat Simple_repeat 1 83 0 3 1345 222 37 0 0 chr1 99720646 99720673 -97474759 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1345 394 269 25 42 chr1 99721912 99722032 -97473400 - MIR SINE MIR -61 147 30 3 1345 208 318 167 13 chr1 99722913 99723115 -97472317 + MIR SINE MIR 12 234 -34 3 1345 183 265 245 0 chr1 99723797 99723895 -97471537 - MIRb SINE MIR -8 260 139 3 1345 516 126 0 0 chr1 99725353 99725440 -97469992 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 1345 217 328 171 8 chr1 99726527 99726644 -97468788 + MIRb SINE MIR 14 149 -119 3 1345 1145 82 0 0 chr1 99726817 99726964 -97468468 - B1_Mus1 SINE Alu 0 148 2 3 1345 191 140 53 0 chr1 99730640 99730697 -97464735 + A-rich Low_complexity Low_complexity 2 61 0 3 1345 1134 74 0 20 chr1 99731812 99731963 -97463469 - B1_Mus1 SINE Alu 0 148 1 3 1345 584 304 19 0 chr1 99732024 99732185 -97463247 - B3A SINE B2 -18 180 17 3 1345 370 250 78 13 chr1 99732452 99732606 -97462826 + L1_Mur3 LINE L1 4774 4937 -943 3 1345 202 298 18 0 chr1 99733413 99733470 -97461962 - L4 LINE RTE -1765 264 207 3 1345 22 56 0 0 chr1 99734465 99734501 -97460931 + AT_rich Low_complexity Low_complexity 1 36 0 3 1345 338 282 13 0 chr1 99735321 99735399 -97460033 + ID4 SINE ID 1 79 -4 3 1345 1970 124 83 21 chr1 99736126 99736463 -97458969 + ORR1B2 LTR MaLR 1 358 -9 3 1345 210 362 148 0 chr1 99737636 99737797 -97457635 - MIR3 SINE MIR -21 187 2 3 1345 605 317 85 32 chr1 99738340 99738682 -97456750 + MLT1A0 LTR MaLR 6 365 0 3 1345 26 0 0 0 chr1 99739127 99739153 -97456279 + AT_rich Low_complexity Low_complexity 1 26 0 3 1345 774 257 54 61 chr1 99739340 99739618 -97455814 - B4A SINE B4 -15 277 2 3 1345 24 53 0 0 chr1 99741897 99741935 -97453497 + AT_rich Low_complexity Low_complexity 1 38 0 3 1345 989 289 58 53 chr1 99742039 99742586 -97452846 - MER44B DNA MER2_type 0 550 1 3 1345 237 139 0 0 chr1 99742854 99742897 -97452535 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 1345 23 33 0 0 chr1 99743233 99743263 -97452169 + AT_rich Low_complexity Low_complexity 1 30 0 3 1345 269 289 150 7 chr1 99743450 99743603 -97451829 - L1MA4 LINE L1 -376 5924 5750 3 1345 29 0 0 0 chr1 99744302 99744331 -97451101 + AT_rich Low_complexity Low_complexity 1 29 0 3 1346 513 198 0 0 chr1 99746751 99746872 -97448560 + (CA)n Simple_repeat Simple_repeat 2 122 0 3 1346 833 152 262 0 chr1 99750145 99750309 -97445123 - B3 SINE B2 -6 210 4 3 1346 362 169 11 0 chr1 99750403 99750492 -97444940 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 3 1346 22 0 0 0 chr1 99753950 99753972 -97441460 + AT_rich Low_complexity Low_complexity 1 22 0 3 1346 208 0 62 0 chr1 99754593 99754625 -97440807 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1346 1180 68 0 0 chr1 99754625 99754772 -97440660 - B1_Mus2 SINE Alu 0 147 1 3 1346 270 81 0 0 chr1 99754800 99754837 -97440595 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 3 1346 269 284 62 21 chr1 99755018 99755162 -97440270 - Lx8 LINE L1 -12 7461 7312 3 1346 270 319 152 19 chr1 99755402 99755613 -97439819 + MIR SINE MIR 23 261 -1 3 1346 229 170 0 54 chr1 99756560 99756616 -97438816 + Lx8 LINE L1 6120 6172 -1301 3 1346 890 293 80 18 chr1 99756647 99756927 -97438505 + Lx8 LINE L1 7049 7337 -136 3 1346 293 0 27 0 chr1 99756927 99756964 -97438468 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1346 890 293 80 18 chr1 99756964 99757083 -97438349 + Lx8 LINE L1 7338 7473 0 3 1346 377 287 74 0 chr1 99757214 99757322 -97438110 - MIRb SINE MIR -46 222 107 3 1346 1357 85 5 31 chr1 99757442 99757637 -97437795 + B2_Mm2 SINE B2 1 190 -5 3 1346 744 282 75 0 chr1 99759155 99759343 -97436089 - B3 SINE B2 -14 202 1 3 1346 231 284 14 109 chr1 99759700 99759838 -97435594 + Cheshire DNA MER1_type 1181 1305 -1115 3 1346 253 214 0 18 chr1 99761236 99761293 -97434139 + GA-rich Low_complexity Low_complexity 2 57 0 4 1346 33884 46 1 3 chr1 99762272 99767652 -97427780 + L1Md_T LINE L1 126 5589 -297 4 1346 8417 35 0 0 chr1 99767652 99768648 -97426784 + L1Md_T LINE L1 5590 6585 0 4 1346 225 0 0 0 chr1 99769518 99769543 -97425889 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 4 1346 319 234 211 5 chr1 99769641 99769826 -97425606 - L1M2 LINE L1 -1080 5063 4841 4 1346 899 275 142 6 chr1 99769871 99770222 -97425210 + Lx8 LINE L1 6095 6493 -980 4 1346 1282 291 81 26 chr1 99770377 99770956 -97424476 + Lx8 LINE L1 6859 7469 -4 4 1346 2314 110 3 0 chr1 99771006 99771332 -97424100 + ORR1A2 LTR MaLR 1 327 0 4 1346 329 325 48 6 chr1 99771651 99771818 -97423614 + MER3 DNA MER1_type 1 174 -35 4 1346 535 297 26 6 chr1 99772246 99772402 -97423030 + B3A SINE B2 1 159 -39 4 1346 459 92 0 0 chr1 99772417 99772482 -97422950 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1346 203 264 152 11 chr1 99773169 99773261 -97422171 - MIR SINE MIR -42 220 116 4 1346 961 179 12 0 chr1 99773687 99773860 -97421572 + B2_Mm2 SINE B2 2 176 -19 4 1346 195 385 58 0 chr1 99774185 99774289 -97421143 + L2b LINE L2 3266 3375 0 4 1346 529 229 61 8 chr1 99774751 99774883 -97420549 + B1F SINE Alu 9 147 -2 4 1346 223 292 123 0 chr1 99776997 99777062 -97418370 + ID2 SINE ID 3 75 -8 4 1346 30 69 0 0 chr1 99777114 99777172 -97418260 + AT_rich Low_complexity Low_complexity 1 58 0 4 1346 706 260 21 48 chr1 99777678 99777864 -97417568 - B4A SINE B4 -111 181 1 4 1346 212 263 20 31 chr1 99778060 99778158 -97417274 + (TATATG)n Simple_repeat Simple_repeat 1 97 0 4 1346 200 185 0 18 chr1 99779566 99779621 -97415811 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1346 671 328 22 96 chr1 99779629 99779943 -97415489 - B4A SINE B4 0 292 2 4 1346 311 328 0 62 chr1 99781520 99781712 -97413720 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1346 818 263 122 24 chr1 99781732 99781985 -97413447 - B4A SINE B4 -4 288 11 4 1346 262 224 0 0 chr1 99782734 99782783 -97412649 + MTE2a LTR MaLR 2 50 -329 4 1346 759 294 119 57 chr1 99782783 99783154 -97412278 - MTD LTR MaLR 0 419 26 4 1346 821 258 78 52 chr1 99783200 99783507 -97411925 + MTE2a LTR MaLR 39 353 -26 4 1346 812 283 12 87 chr1 99784551 99784872 -97410560 + MT2B LTR ERVL 305 601 0 4 1346 1823 215 27 40 chr1 99784872 99785395 -97410037 + L1_Mur3 LINE L1 3426 3941 -1939 4 1346 1746 201 15 9 chr1 99785395 99785727 -97409705 - MTC LTR MaLR 0 421 88 4 1346 882 73 323 0 chr1 99785727 99785885 -97409547 + L1_Mus2 LINE L1 6354 6562 -4 4 1346 189 0 0 0 chr1 99785903 99785924 -97409508 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1346 668 200 0 0 chr1 99785959 99786079 -97409353 - MTC LTR MaLR -301 120 1 4 1346 1487 155 0 4 chr1 99786079 99786344 -97409088 + L1_Mur3 LINE L1 3937 4200 -1680 4 1346 294 53 0 0 chr1 99786588 99786626 -97408806 + Lx9 LINE L1 6855 6892 -752 4 1346 1649 78 81 8 chr1 99787261 99787520 -97407912 + L1_Mus4 LINE L1 6357 6634 -2 4 1346 25 0 0 0 chr1 99788346 99788371 -97407061 + AT_rich Low_complexity Low_complexity 1 25 0 4 1346 284 287 218 0 chr1 99788559 99788660 -97406772 + RSINE1 SINE B4 13 135 -30 4 1346 450 0 0 0 chr1 99788684 99788734 -97406698 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1346 532 195 119 6 chr1 99788764 99788924 -97406508 - L1MA7 LINE L1 -377 5914 5737 4 1346 356 234 24 114 chr1 99788937 99789079 -97406353 - B1F SINE Alu -1 148 3 4 1346 540 0 0 0 chr1 99789383 99789443 -97405989 + (TCTCTG)n Simple_repeat Simple_repeat 5 64 0 4 1346 575 284 122 45 chr1 99791356 99791978 -97403454 + Lx7 LINE L1 6759 7444 -29 4 1346 200 35 35 0 chr1 99792677 99792706 -97402726 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 1346 21 57 0 0 chr1 99793853 99793888 -97401544 + AT_rich Low_complexity Low_complexity 1 35 0 4 1346 29 0 0 0 chr1 99793898 99793927 -97401505 + AT_rich Low_complexity Low_complexity 1 29 0 4 1346 425 305 94 47 chr1 99793927 99794213 -97401219 + MLT2D LTR ERVL 32 330 -84 4 1346 288 220 29 20 chr1 99794236 99794338 -97401094 + CT-rich Low_complexity Low_complexity 3 105 0 4 1346 249 43 0 21 chr1 99795014 99795062 -97400370 + L1Md_T LINE L1 6536 6582 0 4 1346 635 271 26 6 chr1 99795333 99795489 -97399943 + MTE2b LTR MaLR 221 379 0 4 1346 225 0 0 0 chr1 99795500 99795525 -97399907 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1346 4422 218 71 48 chr1 99795678 99796921 -97398511 + Lx7 LINE L1 6250 7520 -176 4 1346 324 161 0 0 chr1 99796921 99797002 -97398430 + (TGAG)n Simple_repeat Simple_repeat 4 84 0 4 1346 269 200 132 9 chr1 99797003 99797109 -97398323 + Lx7 LINE L1 7578 7696 0 4 1346 1286 98 11 5 chr1 99798272 99798456 -97396976 - B2_Mm1t SINE B2 -7 186 2 4 1346 394 286 17 80 chr1 99798829 99799004 -97396428 - RSINE1 SINE B4 0 165 2 4 1346 2355 157 61 26 chr1 99799045 99799471 -97395961 + RLTR11B LTR ERVK 4 444 -9 4 1346 894 60 0 0 chr1 99800103 99800220 -97395212 + (GA)n Simple_repeat Simple_repeat 2 118 0 4 1346 22 80 0 0 chr1 99801636 99801686 -97393746 + AT_rich Low_complexity Low_complexity 1 50 0 4 1346 818 290 18 24 chr1 99801688 99801894 -97393538 - B3 SINE B2 -2 196 2 4 1346 26 0 0 0 chr1 99801922 99801948 -97393484 + AT_rich Low_complexity Low_complexity 1 26 0 4 1346 608 299 53 14 chr1 99802106 99802313 -97393119 + B3 SINE B2 2 216 0 4 1346 276 30 0 0 chr1 99802763 99802796 -97392636 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1346 270 194 100 64 chr1 99803391 99803501 -97391931 - MIR3 SINE MIR -5 203 90 4 1346 240 318 173 0 chr1 99804540 99804650 -97390782 + MamRep137 DNA TcMar? 56 184 -260 4 1346 188 0 74 0 chr1 99804664 99804691 -97390741 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1346 1866 133 0 20 chr1 99804699 99804998 -97390434 + Lx2 LINE L1 6705 6997 0 4 1346 240 35 0 0 chr1 99805193 99805222 -97390210 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1346 25 51 0 0 chr1 99805267 99805306 -97390126 + AT_rich Low_complexity Low_complexity 1 39 0 4 1346 420 99 0 0 chr1 99806091 99806162 -97389270 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1346 234 0 0 0 chr1 99806162 99806188 -97389244 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1346 570 124 0 0 chr1 99806990 99807079 -97388353 + (GGA)n Simple_repeat Simple_repeat 3 91 0 4 1346 405 0 0 0 chr1 99807079 99807124 -97388308 + (CAA)n Simple_repeat Simple_repeat 2 46 0 4 1346 507 314 0 0 chr1 99807862 99807986 -97387446 + RSINE1 SINE B4 26 149 -16 4 1346 22 0 0 0 chr1 99808016 99808038 -97387394 + AT_rich Low_complexity Low_complexity 1 22 0 4 1346 213 290 48 0 chr1 99808832 99808894 -97386538 + MIRc SINE MIR 83 147 -121 4 1346 720 213 94 20 chr1 99809239 99809440 -97385992 + B3 SINE B2 1 216 0 4 1346 7458 47 7 3 chr1 99809719 99810645 -97384787 + L1Md_F2 LINE L1 5654 6582 0 4 1346 676 318 138 88 chr1 99810869 99811615 -97383817 - MER63C DNA AcHobo -3 927 145 4 1346 956 153 0 0 chr1 99811633 99811777 -97383655 + B1_Mur4 SINE Alu 1 144 -6 4 1346 666 0 0 0 chr1 99811778 99811852 -97383580 + (CAAAG)n Simple_repeat Simple_repeat 2 75 0 4 1346 410 53 18 0 chr1 99812480 99812537 -97382895 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1346 515 251 152 62 chr1 99813595 99813773 -97381659 + B3A SINE B2 1 194 -4 4 1346 418 303 19 33 chr1 99814233 99814424 -97381008 - B3A SINE B2 0 193 9 4 1346 559 235 65 0 chr1 99814505 99814675 -97380757 + RMER1B Other Other 885 1065 -1 4 1346 267 122 0 0 chr1 99815546 99815595 -97379837 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1346 1441 54 38 0 chr1 99815602 99815786 -97379646 - B2_Mm2 SINE B2 -3 192 2 4 1346 342 0 0 0 chr1 99815790 99815828 -97379604 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1346 1199 149 17 39 chr1 99818157 99818388 -97377044 + URR1A DNA MER1_type 1 226 0 4 1346 2175 139 14 0 chr1 99818755 99819107 -97376325 - RLTR15 LTR ERVK 0 359 3 4 1346 222 37 0 0 chr1 99819419 99819446 -97375986 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1346 270 0 0 0 chr1 99821559 99821589 -97373843 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1346 659 292 19 7 chr1 99823817 99823972 -97371460 + B3A SINE B2 1 157 -41 4 1346 207 100 0 0 chr1 99823972 99824002 -97371430 + (CATA)n Simple_repeat Simple_repeat 4 33 0 4 1346 422 293 27 65 chr1 99824002 99824032 -97371400 + B2_Mm2 SINE B2 148 178 -17 4 1346 921 219 35 20 chr1 99824040 99824240 -97371192 + B3 SINE B2 3 205 -11 4 1346 306 239 0 0 chr1 99824280 99824372 -97371060 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1346 1012 234 142 95 chr1 99824885 99825244 -97370188 + MTE2b LTR MaLR 4 379 0 4 1346 180 0 0 0 chr1 99825313 99825333 -97370099 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1346 25 0 0 0 chr1 99826573 99826598 -97368834 + AT_rich Low_complexity Low_complexity 1 25 0 4 1346 28 0 0 0 chr1 99827070 99827098 -97368334 + AT_rich Low_complexity Low_complexity 1 28 0 4 1346 604 312 10 34 chr1 99827121 99827327 -97368105 + B3 SINE B2 16 216 0 4 1346 318 337 128 15 chr1 99830757 99830953 -97364479 + MIRb SINE MIR 6 223 -45 4 1346 351 0 0 0 chr1 99831554 99831593 -97363839 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1346 288 0 0 0 chr1 99831862 99831894 -97363538 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1346 315 0 0 0 chr1 99831894 99831928 -97363504 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1346 879 10 0 0 chr1 99832023 99832123 -97363309 + (GA)n Simple_repeat Simple_repeat 1 100 0 4 1346 985 204 143 5 chr1 99832976 99833193 -97362239 + 7SK RNA RNA 1 247 -84 5 1346 526 276 8 20 chr1 99833193 99833372 -97362060 - B3A SINE B2 -19 176 1 5 1346 216 0 0 0 chr1 99833582 99833606 -97361826 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 5 1346 26 0 0 0 chr1 99836043 99836069 -97359363 + AT_rich Low_complexity Low_complexity 1 26 0 5 1346 413 298 113 0 chr1 99836147 99836271 -97359161 + RSINE1 SINE B4 11 148 -17 5 1346 21 71 0 0 chr1 99836277 99836319 -97359113 + AT_rich Low_complexity Low_complexity 1 42 0 5 1346 297 0 0 0 chr1 99837718 99837751 -97357681 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1346 221 191 14 42 chr1 99838695 99838766 -97356666 + (CTAAT)n Simple_repeat Simple_repeat 3 71 0 5 1346 1773 76 4 16 chr1 99839172 99839414 -97356018 + L1_Mus1 LINE L1 6329 6567 0 5 1346 432 0 0 0 chr1 99839910 99839958 -97355474 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1346 285 186 0 0 chr1 99840507 99840577 -97354855 + A-rich Low_complexity Low_complexity 1 70 0 5 1346 225 224 20 0 chr1 99840764 99840813 -97354619 + CT-rich Low_complexity Low_complexity 3 52 0 5 1346 465 225 23 84 chr1 99841783 99841914 -97353518 + PB1 SINE Alu 1 123 -4 5 1346 3848 150 21 16 chr1 99842374 99843040 -97352392 + Lx2 LINE L1 6315 6983 -14 5 1346 429 0 0 47 chr1 99843041 99843105 -97352327 + (GAGAA)n Simple_repeat Simple_repeat 5 65 0 5 1346 352 252 96 30 chr1 99843513 99843648 -97351784 - MIR SINE MIR -3 259 116 5 1346 284 247 86 0 chr1 99843671 99843752 -97351680 + MER67A LTR ERV1 2 89 -454 5 1346 2481 113 35 8 chr1 99844042 99844436 -97350996 + Lx LINE L1 6249 6653 -1 5 1346 22 0 0 0 chr1 99845220 99845242 -97350190 + AT_rich Low_complexity Low_complexity 1 22 0 5 1346 209 235 0 56 chr1 99846156 99846228 -97349204 + GA-rich Low_complexity Low_complexity 2 69 0 5 1346 224 255 0 0 chr1 99846171 99846222 -97349210 + A-rich Low_complexity Low_complexity 5 55 0 5 1346 22 0 0 0 chr1 99847122 99847144 -97348288 + AT_rich Low_complexity Low_complexity 1 22 0 5 1346 439 301 0 62 chr1 99847372 99847517 -97347915 + B1F1 SINE Alu 6 141 -8 5 1346 565 296 8 0 chr1 99847647 99847779 -97347653 + RSINE1 SINE B4 29 161 -4 5 1346 7003 40 1 0 chr1 99847943 99848787 -97346645 - L1Md_F2 LINE L1 0 6582 5738 5 1346 689 193 29 15 chr1 99848915 99849052 -97346380 + B1_Mur1 SINE Alu 3 141 -8 5 1346 1127 42 35 0 chr1 99849204 99849346 -97346086 + B1_Mm SINE Alu 1 147 0 5 1346 219 103 0 0 chr1 99849355 99849394 -97346038 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1346 207 100 0 0 chr1 99850600 99850630 -97344802 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1346 595 342 64 46 chr1 99851124 99851485 -97343947 + MLT2B5 LTR ERVL 148 515 0 5 1346 215 231 75 30 chr1 99851637 99851704 -97343728 + B1F1 SINE Alu 7 76 -73 5 1346 405 0 0 0 chr1 99852485 99852530 -97342902 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1346 655 319 74 22 chr1 99853424 99853735 -97341697 + MTD LTR MaLR 51 377 -42 5 1346 205 89 22 22 chr1 99853739 99853785 -97341647 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1346 966 130 156 58 chr1 99853836 99854041 -97341391 + URR1B DNA MER1_type 1 225 0 5 1346 24 77 0 0 chr1 99854908 99854960 -97340472 + AT_rich Low_complexity Low_complexity 1 52 0 5 1346 290 323 85 39 chr1 99855767 99855796 -97339636 + ID_B1 SINE B4 49 154 -70 5 1346 349 236 75 53 chr1 99855796 99855890 -97339542 + PB1D10 SINE Alu 1 96 -21 5 1346 230 333 88 26 chr1 99858398 99858512 -97336920 - LTR33 LTR ERVL -392 123 3 5 1346 407 259 60 8 chr1 99859474 99859591 -97335841 + PB1 SINE Alu 1 123 -4 5 1346 1141 102 0 0 chr1 99859600 99859747 -97335685 + B1_Mus2 SINE Alu 1 147 0 5 1346 237 146 0 0 chr1 99859747 99859795 -97335637 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1346 886 285 39 28 chr1 99860156 99860441 -97334991 - B4A SINE B4 -3 289 2 5 1346 438 311 57 8 chr1 99861027 99861150 -97334282 + B3 SINE B2 81 209 -7 5 1346 264 163 82 0 chr1 99861372 99861421 -97334011 + MIR SINE MIR 6 58 -204 5 1346 235 300 43 43 chr1 99861967 99862061 -97333371 - L2a LINE L2 -43 3383 3290 5 1346 223 236 73 0 chr1 99862627 99862682 -97332750 + ID4 SINE ID 2 60 -23 5 1346 522 309 81 37 chr1 99865092 99865364 -97330068 - B4A SINE B4 -6 286 3 5 1346 183 248 267 0 chr1 99865942 99866047 -97329385 - MIR SINE MIR -54 208 76 5 1346 1328 333 35 17 chr1 99866074 99866594 -97328838 + MER67A LTR ERV1 15 543 0 5 1346 637 322 74 28 chr1 99866613 99867047 -97328385 - L2 LINE L2 -460 2959 2506 5 1346 265 291 22 44 chr1 99867300 99867390 -97328042 + Cheshire DNA MER1_type 166 253 -2167 5 1346 23 68 0 0 chr1 99867654 99867698 -97327734 + AT_rich Low_complexity Low_complexity 1 44 0 5 1346 185 429 31 8 chr1 99867881 99868008 -97327424 + MIRc SINE MIR 19 148 -120 5 1346 180 77 0 0 chr1 99868301 99868327 -97327105 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1346 295 215 226 15 chr1 99868327 99868464 -97326968 - Lx9 LINE L1 -168 7476 7311 5 1346 261 265 23 35 chr1 99868643 99868729 -97326703 + B4 SINE B4 1 85 -207 5 1346 805 95 11 34 chr1 99868776 99868951 -97326481 + (TCTCC)n Simple_repeat Simple_repeat 2 172 0 5 1346 28 0 0 0 chr1 99868963 99868991 -97326441 + AT_rich Low_complexity Low_complexity 1 28 0 5 1346 346 77 0 0 chr1 99869517 99869569 -97325863 + L1Md_F2 LINE L1 6519 6570 -12 5 1346 351 44 0 0 chr1 99869814 99869859 -97325573 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1346 227 348 21 21 chr1 99870842 99870936 -97324496 + B1F SINE Alu 1 94 -55 5 1346 793 144 26 0 chr1 99870948 99871101 -97324331 + GA-rich Low_complexity Low_complexity 2 158 0 5 1346 318 115 0 0 chr1 99874074 99874135 -97321297 + (T)n Simple_repeat Simple_repeat 1 61 0 5 1346 305 287 73 53 chr1 99874751 99874902 -97320530 + LTR48 LTR ERV1 6 159 -628 5 1346 247 316 38 12 chr1 99875629 99875709 -97319723 + ID4_ SINE ID 1 82 -1 5 1346 216 0 0 0 chr1 99875802 99875826 -97319606 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1347 264 349 113 13 chr1 99877413 99877564 -97317868 + MIR SINE MIR 77 242 -20 5 1347 23 33 0 0 chr1 99877953 99877983 -97317449 + AT_rich Low_complexity Low_complexity 1 30 0 5 1347 307 294 112 40 chr1 99878213 99878365 -97317067 + RSINE1 SINE B4 3 165 0 5 1347 198 171 0 0 chr1 99878366 99878407 -97317025 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 5 1347 324 291 77 10 chr1 99878445 99878549 -97316883 - MLT1F LTR MaLR -238 310 200 5 1347 289 217 77 65 chr1 99878789 99878957 -97316475 - L1MC4 LINE L1 -962 7080 6911 5 1347 812 278 28 9 chr1 99879891 99880102 -97315330 - MER20 DNA MER1_type -4 215 1 5 1347 342 67 0 0 chr1 99880256 99880301 -97315131 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1347 323 44 22 0 chr1 99880325 99880370 -97315062 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1347 250 340 105 20 chr1 99880383 99880536 -97314896 - MIR SINE MIR -93 169 4 5 1347 236 331 156 19 chr1 99880563 99880723 -97314709 - MIR SINE MIR -4 258 77 5 1347 220 27 54 0 chr1 99881000 99881037 -97314395 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1347 2001 161 14 6 chr1 99881525 99881875 -97313557 + RLTR15 LTR ERVK 6 358 -1 5 1347 228 348 95 9 chr1 99884279 99884395 -97311037 - MIRb SINE MIR -40 228 103 5 1347 247 305 147 13 chr1 99884475 99884631 -97310801 - Charlie23a DNA MER1_type -77 262 86 5 1347 273 149 0 0 chr1 99885068 99885135 -97310297 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1347 416 306 100 97 chr1 99885254 99885583 -97309849 - ORR1E LTR MaLR -11 348 19 5 1347 3274 158 148 31 chr1 99889055 99889732 -97305700 + RMER6A LTR ERVK 1 756 0 5 1347 2963 46 77 5 chr1 99889829 99890220 -97305212 + BGLII LTR ERVK 3 421 0 5 1347 247 243 93 13 chr1 99890558 99890633 -97304799 + LTR48 LTR ERV1 702 782 -5 5 1347 1616 160 47 18 chr1 99891022 99891360 -97304072 + RLTR15 LTR ERVK 1 348 -11 5 1347 288 0 0 0 chr1 99892331 99892363 -97303069 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1347 227 73 49 0 chr1 99892782 99892823 -97302609 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 5 1347 326 241 105 53 chr1 99892887 99893001 -97302431 + MER57D LTR ERV1 172 291 -120 5 1347 5010 126 97 14 chr1 99893499 99894358 -97301074 + Lx4A LINE L1 6124 7053 -5 5 1347 1268 13 0 0 chr1 99895810 99895961 -97299471 + L1Md_A LINE L1 6432 6582 0 5 1347 789 276 26 21 chr1 99896335 99896524 -97298908 + B3 SINE B2 1 190 -26 5 1347 288 241 0 0 chr1 99896755 99896813 -97298619 - PB1D10 SINE Alu -9 108 51 5 1347 5799 217 87 19 chr1 99896814 99898324 -97297108 + Lx7 LINE L1 6077 7689 -7 5 1347 801 65 0 0 chr1 99898835 99898943 -97296489 + (CTG)n Simple_repeat Simple_repeat 3 110 0 5 1347 226 308 76 11 chr1 99899474 99899566 -97295866 + MER5A DNA MER1_type 37 134 -55 5 1347 396 264 98 98 chr1 99901022 99901165 -97294267 - B1F1 SINE Alu 0 149 7 5 1347 354 367 31 0 chr1 99902655 99902783 -97292649 + B1F1 SINE Alu 3 134 -15 5 1347 284 296 0 53 chr1 99902963 99903038 -97292394 + PB1D7 SINE Alu 49 119 -1 6 1347 393 246 44 0 chr1 99903187 99903301 -97292131 - L1MD2 LINE L1 -32 6327 6209 6 1347 470 250 98 10 chr1 99903298 99903492 -97291940 - L1MD2 LINE L1 -390 5969 5759 6 1347 386 289 38 0 chr1 99903618 99903777 -97291655 - L1MD2 LINE L1 -936 5210 5046 6 1347 230 265 0 0 chr1 99904364 99904413 -97291019 - ID_B1 SINE B4 -59 165 117 6 1347 315 0 0 0 chr1 99904557 99904592 -97290840 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1347 1330 67 51 0 chr1 99904964 99905142 -97290290 + B2_Mm2 SINE B2 1 187 -8 6 1347 331 236 19 0 chr1 99905862 99905968 -97289464 + Lx9 LINE L1 7532 7639 -5 6 1347 1173 75 6 11 chr1 99906403 99906579 -97288853 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 6 1347 204 40 0 0 chr1 99906581 99906606 -97288826 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 6 1347 4000 62 4 8 chr1 99906638 99907156 -97288276 - L1_Mus3 LINE L1 -1 6637 6122 6 1347 1114 98 17 0 chr1 99907161 99907335 -97288097 + (TTCTC)n Simple_repeat Simple_repeat 4 180 0 6 1347 407 255 304 5 chr1 99909215 99909432 -97286000 + B4A SINE B4 1 282 -10 6 1347 947 162 24 6 chr1 99911420 99911588 -97283844 - B2_Mm2 SINE B2 -21 174 4 6 1347 333 0 0 0 chr1 99912405 99912442 -97282990 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1347 703 336 43 26 chr1 99912692 99913093 -97282339 + L2b LINE L2 2710 3124 -251 6 1347 2290 115 48 3 chr1 99914629 99914986 -97280446 + Lx2 LINE L1 6623 6995 -2 6 1347 397 331 33 0 chr1 99916501 99916652 -97278780 + RSINE1 SINE B4 4 159 -6 6 1347 203 333 0 0 chr1 99916681 99916735 -97278697 + MIR SINE MIR 42 95 -113 6 1347 342 0 0 0 chr1 99916993 99917031 -97278401 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1347 207 146 0 0 chr1 99917043 99917084 -97278348 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1347 216 0 0 0 chr1 99917393 99917417 -97278015 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1347 252 381 48 0 chr1 99917790 99917895 -97277537 + MamRep1894 DNA hAT 7 116 -7 6 1347 3002 65 3 0 chr1 99918865 99919247 -97276185 - L1_Mus1 LINE L1 -2 6565 6183 6 1347 4754 39 0 0 chr1 99919643 99920208 -97275224 - L1Md_F2 LINE L1 -12 6570 6006 6 1347 207 133 0 0 chr1 99920308 99920353 -97275079 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1347 747 250 75 11 chr1 99921266 99921440 -97273992 - ID_B1 SINE B4 -5 219 35 6 1347 21 0 0 0 chr1 99923281 99923302 -97272130 + AT_rich Low_complexity Low_complexity 1 21 0 6 1347 374 271 38 103 chr1 99923463 99923648 -97271784 - MamRep4096 DNA hAT? -253 173 1 6 1347 1787 204 49 12 chr1 99925100 99925495 -97269937 + MTD LTR MaLR 1 376 -3 6 1347 394 286 5 152 chr1 99925634 99925832 -97269600 + Charlie12 DNA MER1_type 7 175 -2698 6 1347 332 296 0 12 chr1 99925784 99925866 -97269566 - RMER30 DNA MER1_type -120 82 2 6 1347 190 286 13 67 chr1 99926805 99926880 -97268552 + MIR SINE MIR 121 191 -71 6 1347 22 56 0 0 chr1 99927232 99927268 -97268164 + AT_rich Low_complexity Low_complexity 1 36 0 6 1347 261 0 0 0 chr1 99927711 99927740 -97267692 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1347 216 0 0 0 chr1 99928758 99928782 -97266650 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1347 23 78 0 0 chr1 99929056 99929107 -97266325 + AT_rich Low_complexity Low_complexity 1 51 0 6 1347 3172 48 13 2 chr1 99929122 99929518 -97265914 - MTB LTR MaLR 0 400 1 6 1347 895 307 32 8 chr1 99930255 99930501 -97264931 - B4A SINE B4 -6 286 35 6 1347 1980 21 0 13 chr1 99930911 99931148 -97264284 + L1Md_F3 LINE L1 6336 6569 -15 6 1347 248 356 200 9 chr1 99931760 99932180 -97263252 + L2 LINE L2 2561 3060 -359 6 1347 266 319 70 71 chr1 99933339 99933715 -97261717 - L2b LINE L2 -2 3424 3051 6 1347 340 380 118 3 chr1 99933750 99934038 -97261394 - L2b LINE L2 -459 2960 2640 6 1347 321 288 41 16 chr1 99934087 99934281 -97261151 - MER33 DNA MER1_type 0 324 126 6 1347 419 302 191 0 chr1 99934784 99934946 -97260486 - L2b LINE L2 -1053 2366 2174 6 1347 889 222 54 25 chr1 99935269 99935472 -97259960 + B3 SINE B2 1 209 -7 6 1347 1033 127 7 7 chr1 99935473 99935781 -97259651 + (GGA)n Simple_repeat Simple_repeat 1 308 0 6 1347 584 229 141 21 chr1 99935794 99935986 -97259446 + B3 SINE B2 2 216 0 6 1347 6427 57 0 2 chr1 99937553 99938350 -97257082 - L1Md_F2 LINE L1 -14 6568 5774 6 1347 510 17 0 0 chr1 99939897 99939956 -97255476 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 6 1347 956 40 53 7 chr1 99939956 99940105 -97255327 + (TTTCC)n Simple_repeat Simple_repeat 5 161 0 6 1347 185 94 31 0 chr1 99940105 99940137 -97255295 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 6 1347 1175 65 89 0 chr1 99940434 99940602 -97254830 - B2_Mm2 SINE B2 -8 187 5 6 1347 342 0 0 0 chr1 99941068 99941106 -97254326 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1347 564 306 141 58 chr1 99941657 99942119 -97253313 + MLT1D LTR MaLR 1 500 -5 6 1347 442 268 66 86 chr1 99945908 99946059 -97249373 + RSINE1 SINE B4 3 150 -15 6 1347 552 302 131 11 chr1 99946165 99946356 -97249076 + ID_B1 SINE B4 2 215 -9 6 1347 870 93 0 0 chr1 99946398 99946505 -97248927 + U6 snRNA snRNA 1 107 0 6 1347 1679 185 17 40 chr1 99946505 99946854 -97248578 + Lx LINE L1 6302 6642 -12 6 1347 23 0 0 0 chr1 99947127 99947150 -97248282 + AT_rich Low_complexity Low_complexity 1 23 0 6 1347 1324 34 7 0 chr1 99948195 99948342 -97247090 - B1_Mus1 SINE Alu 0 148 1 6 1347 1422 6 0 0 chr1 99948674 99948831 -97246601 - L1Md_F3 LINE L1 -486 6098 5942 6 1347 714 21 11 0 chr1 99948831 99948926 -97246506 + L1Md_F3 LINE L1 6488 6583 -1 6 1347 252 0 0 0 chr1 99949786 99949814 -97245618 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1347 528 176 28 0 chr1 99950059 99950167 -97245265 - Lx4A LINE L1 -9 7049 6939 6 1347 350 258 22 0 chr1 99950167 99950256 -97245176 - B3 SINE B2 -16 200 110 6 1347 203 314 23 11 chr1 99951776 99951864 -97243568 + MIRm SINE MIR 70 161 -115 6 1347 776 175 143 6 chr1 99953318 99953479 -97241953 - URR1A DNA MER1_type -43 183 1 6 1347 31 0 0 0 chr1 99953909 99953940 -97241492 + AT_rich Low_complexity Low_complexity 1 31 0 6 1347 22 35 0 0 chr1 99955416 99955445 -97239987 + AT_rich Low_complexity Low_complexity 1 29 0 6 1347 584 27 0 13 chr1 99956317 99956392 -97239040 + (TTCTC)n Simple_repeat Simple_repeat 4 77 0 6 1347 183 80 0 0 chr1 99956392 99956417 -97239015 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 6 1347 1146 35 0 7 chr1 99956417 99956559 -97238873 - B1_Mm SINE Alu 0 147 7 6 1347 326 233 133 0 chr1 99957765 99957885 -97237547 - L1MA7 LINE L1 -1 6290 6155 6 1347 459 35 0 0 chr1 99957910 99957967 -97237465 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1347 732 279 16 19 chr1 99957985 99958174 -97237258 + B3 SINE B2 6 197 -1 6 1347 289 220 44 115 chr1 99959522 99959635 -97235797 + MT2B LTR ERVL 143 247 -354 6 1347 551 178 9 36 chr1 99959549 99959660 -97235772 + PB1D9 SINE Alu 13 120 0 6 1347 287 301 0 24 chr1 99959958 99960043 -97235389 + ID4_ SINE ID 1 83 0 6 1347 201 94 0 0 chr1 99960658 99960690 -97234742 + (TATAA)n Simple_repeat Simple_repeat 3 34 0 6 1347 645 179 17 0 chr1 99961255 99961372 -97234060 + B1_Mus2 SINE Alu 29 147 0 6 1347 593 291 23 0 chr1 99962021 99962193 -97233239 - L1MB3 LINE L1 -11 6172 5997 6 1347 2150 141 5 100 chr1 99962194 99962604 -97232828 - ORR1C1 LTR MaLR 0 378 8 6 1347 491 276 92 49 chr1 99962604 99962909 -97232523 - L1MB4 LINE L1 -182 5998 5681 6 1347 718 102 36 14 chr1 99963052 99963192 -97232240 + GA-rich Low_complexity Low_complexity 3 145 0 6 1347 26 30 0 0 chr1 99964004 99964037 -97231395 + AT_rich Low_complexity Low_complexity 1 33 0 6 1347 1136 162 207 132 chr1 99964303 99964651 -97230781 - ORR1D1 LTR MaLR 0 374 1 6 1347 330 224 50 20 chr1 99966445 99966545 -97228887 - MER53 DNA hAT -90 103 1 6 1347 504 0 0 0 chr1 99967248 99967304 -97228128 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 6 1347 285 325 126 5 chr1 99967759 99967957 -97227475 + MIR SINE MIR 40 261 -1 6 1347 507 316 85 36 chr1 99969054 99969383 -97226049 + MER20B DNA MER1_type 364 708 -75 6 1347 1061 231 14 0 chr1 99969436 99969648 -97225784 + B3 SINE B2 2 216 0 6 1347 312 302 148 5 chr1 99971271 99971474 -97223958 - L2a LINE L2 -67 3359 3128 6 1347 600 322 50 36 chr1 99972362 99972642 -97222790 - B4A SINE B4 -8 284 1 6 1347 264 30 0 0 chr1 99973510 99973543 -97221889 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1347 3423 55 5 0 chr1 99973554 99973952 -97221480 + MTB LTR MaLR 1 400 0 6 1347 309 355 39 39 chr1 99975585 99975790 -97219642 - MIRb SINE MIR -27 241 37 6 1347 689 265 63 29 chr1 99975887 99976093 -97219339 + B3 SINE B2 1 213 -3 6 1347 339 337 67 67 chr1 99977156 99977366 -97218066 + MIR SINE MIR 15 224 -38 6 1347 224 305 133 0 chr1 99977400 99977505 -97217927 - MIR SINE MIR -128 134 16 6 1347 333 0 0 0 chr1 99978578 99978615 -97216817 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1347 615 27 0 0 chr1 99978615 99978687 -97216745 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1347 310 271 92 63 chr1 99979443 99979585 -97215847 + MLT1C LTR MaLR 221 366 -101 6 1347 346 233 22 22 chr1 99979587 99979679 -97215753 - MLT1A1 LTR MaLR -16 392 301 6 1347 245 371 20 10 chr1 99979903 99980001 -97215431 + MLT1C LTR MaLR 369 467 0 6 1347 198 0 0 0 chr1 99980423 99980445 -97214987 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1347 251 28 28 0 chr1 99981014 99981050 -97214382 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1347 877 195 68 10 chr1 99981981 99982173 -97213259 - B3 SINE B2 -11 205 3 7 1347 271 307 20 30 chr1 99982771 99982870 -97212562 + BC1_Mm scRNA scRNA 2 101 -51 7 1347 648 59 0 0 chr1 99982870 99982955 -97212477 + (GGGA)n Simple_repeat Simple_repeat 3 87 0 7 1347 486 0 0 0 chr1 99983417 99983471 -97211961 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1347 532 285 123 46 chr1 99984705 99984900 -97210532 - B3A SINE B2 -1 215 6 7 1347 436 309 26 13 chr1 99985790 99985941 -97209491 + MER3 DNA MER1_type 10 162 -47 7 1347 462 308 102 45 chr1 99986025 99986290 -97209142 - LTR40b LTR ERVL -99 363 84 7 1347 296 64 21 0 chr1 99986572 99986619 -97208813 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1347 1036 167 8 97 chr1 99987287 99987546 -97207886 - RLTR28 LTR ERVL 0 524 289 7 1347 789 221 10 67 chr1 99987553 99987762 -97207670 + Lx5 LINE L1 6728 6924 -126 7 1347 247 271 16 0 chr1 99987763 99987841 -97207591 + MIRc SINE MIR 79 154 -122 7 1347 318 169 42 0 chr1 99987865 99987936 -97207496 + RLTR28 LTR ERVL 1 74 -450 7 1347 229 179 126 59 chr1 99987938 99988057 -97207375 + Lx4B LINE L1 6932 7058 0 7 1347 386 95 32 0 chr1 99988057 99988120 -97207312 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 7 1347 5878 79 7 4 chr1 99988142 99988876 -97206556 + L1Md_F2 LINE L1 5828 6563 -19 7 1347 416 260 48 9 chr1 99988881 99988986 -97206446 + B1F2 SINE Alu 17 125 -24 7 1347 188 35 35 0 chr1 99988996 99989025 -97206407 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1347 302 0 26 0 chr1 99989553 99989591 -97205841 + (TTA)n Simple_repeat Simple_repeat 2 40 0 7 1347 394 134 0 15 chr1 99989796 99989864 -97205568 + ORR1D2 LTR MaLR 304 370 0 7 1347 533 282 15 8 chr1 99989907 99990039 -97205393 + RSINE1 SINE B4 8 140 -25 7 1347 26 30 0 0 chr1 99990047 99990080 -97205352 + AT_rich Low_complexity Low_complexity 1 33 0 7 1347 853 148 162 17 chr1 99990256 99990435 -97204997 + URR1B DNA MER1_type 5 209 -16 7 1347 238 194 13 40 chr1 99991978 99992053 -97203379 + (CCCCG)n Simple_repeat Simple_repeat 1 73 0 7 1347 459 0 0 0 chr1 99993844 99993895 -97201537 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1347 429 20 0 0 chr1 99993895 99993944 -97201488 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1347 1597 221 53 41 chr1 99994032 99994443 -97200989 - MTD LTR MaLR 0 419 4 7 1347 343 298 90 15 chr1 99996344 99996477 -97198955 + MER5B DNA MER1_type 3 145 -33 7 1347 498 274 102 11 chr1 99997228 99997405 -97198027 - MER44B DNA MER2_type -1 549 357 7 1347 225 236 55 0 chr1 99997455 99997510 -97197922 - MER44B DNA MER2_type -456 94 37 7 1347 1034 310 67 6 chr1 99999068 99999412 -97196020 - MTEb LTR MaLR -14 365 1 7 1347 1462 224 48 5 chr1 99999685 100000000 -97195432 + RMER19C LTR ERVK 1 429 -182 7 1347 1226 157 62 5 chr1 100000002 100000213 -97195219 + RMER19C LTR ERVK 389 611 0 1 1347 407 340 39 5 chr1 100000301 100000475 -97194957 + MLT1E2 LTR MaLR 23 198 -307 2 1347 1084 163 119 0 chr1 100000686 100000888 -97194544 + URR1A DNA MER1_type 1 226 0 3 1347 25 31 0 0 chr1 100001584 100001616 -97193816 + AT_rich Low_complexity Low_complexity 1 32 0 4 1347 359 342 83 17 chr1 100001627 100001816 -97193616 - L1ME3B LINE L1 -73 6167 5961 5 1347 999 245 89 29 chr1 100001816 100002165 -97193267 - ORR1D2 LTR MaLR 0 370 1 6 1347 359 342 83 17 chr1 100002165 100002216 -97193216 - L1ME3B LINE L1 -280 5960 5911 5 1347 399 345 81 17 chr1 100002419 100002655 -97192777 - L1ME3B LINE L1 -453 5787 5537 5 1347 202 316 25 34 chr1 100003237 100003355 -97192077 + L3 LINE CR1 4365 4481 -8 7 1347 288 73 0 0 chr1 100003867 100003888 -97191544 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1347 333 0 0 0 chr1 100003888 100003925 -97191507 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1347 288 73 0 0 chr1 100003925 100003944 -97191488 + (TA)n Simple_repeat Simple_repeat 2 20 0 1 1347 2313 101 0 0 chr1 100006484 100006812 -97188620 + L1_Mus3 LINE L1 5465 5792 -91 1 168 36283 13 1 7 chr1 100006815 100012004 -97183428 + L1Md_A LINE L1 440 5586 -297 1 1348 8847 15 0 0 chr1 100012004 100013000 -97182432 + L1Md_A LINE L1 5587 6582 0 1 1348 540 109 21 0 chr1 100013000 100013105 -97182327 + L1_Mus3 LINE L1 5782 5895 -1114 1 1348 225 354 10 48 chr1 100013240 100013344 -97182088 + Charlie1a DNA MER1_type 108 207 -1248 1 1348 556 146 43 14 chr1 100013355 100013494 -97181938 + CT-rich Low_complexity Low_complexity 2 144 0 1 1348 1197 48 7 0 chr1 100013504 100013650 -97181782 - B1_Mus1 SINE Alu 0 148 2 1 1348 22 0 0 0 chr1 100013658 100013680 -97181752 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 760 268 14 36 chr1 100013680 100013868 -97181564 + B3 SINE B2 1 184 -32 1 1348 677 12 12 0 chr1 100013868 100013950 -97181482 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 1348 760 268 14 36 chr1 100013950 100013982 -97181450 + B3 SINE B2 185 216 0 1 1348 286 389 83 12 chr1 100014006 100014248 -97181184 + Charlie1a DNA MER1_type 237 495 -960 1 1348 504 246 87 101 chr1 100014272 100014480 -97180952 + ID_B1 SINE B4 3 207 -17 1 1348 2052 287 55 66 chr1 100014567 100015250 -97180182 + Lx8 LINE L1 6343 7034 -439 2 1348 1300 54 12 0 chr1 100015250 100015418 -97180014 + L1_Mus1 LINE L1 6398 6567 0 2 1348 2052 287 55 66 chr1 100015418 100015522 -97179910 + Lx8 LINE L1 7035 7121 -352 2 1348 608 295 146 18 chr1 100015763 100016091 -97179341 + Charlie1a DNA MER1_type 747 1116 -339 1 1348 729 250 42 0 chr1 100016250 100016442 -97178990 - B3 SINE B2 -8 208 9 2 1348 258 267 17 0 chr1 100016608 100016668 -97178764 + CT-rich Low_complexity Low_complexity 2 62 0 2 1348 564 218 55 24 chr1 100016920 100017047 -97178385 - B1_Mur3 SINE Alu -15 134 4 2 1348 436 295 158 42 chr1 100017222 100017531 -97177901 - L1MD LINE L1 -818 5328 5007 2 1348 405 0 0 0 chr1 100017531 100017576 -97177856 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1348 436 295 158 42 chr1 100017576 100017882 -97177550 - L1MD LINE L1 -1140 5006 4642 2 1348 222 0 79 0 chr1 100018003 100018041 -97177391 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1348 294 253 136 30 chr1 100018058 100018323 -97177109 - L1MD LINE L1 -3348 2798 2506 2 1348 279 24 0 0 chr1 100018825 100018867 -97176565 + B3A SINE B2 1 42 -151 2 1348 283 136 0 0 chr1 100018865 100018909 -97176523 + B1_Mus2 SINE Alu 104 147 0 2 1348 1346 96 16 0 chr1 100018932 100019120 -97176312 + B2_Mm2 SINE B2 2 192 -3 3 1348 308 379 57 14 chr1 100019437 100019646 -97175786 + L1ME3A LINE L1 5664 5881 -292 3 1348 562 269 67 67 chr1 100020490 100020773 -97174659 + Charlie1b DNA MER1_type 90 372 -151 3 1348 378 0 0 0 chr1 100020773 100020815 -97174617 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1348 342 0 0 0 chr1 100020815 100020852 -97174580 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1348 268 305 0 0 chr1 100021269 100021351 -97174081 + Charlie1a DNA MER1_type 1374 1455 0 1 1348 1430 234 38 95 chr1 100023439 100023653 -97171779 + MTD LTR MaLR 1 210 -209 3 1348 4066 128 5 3 chr1 100023653 100024280 -97171152 + Lx2 LINE L1 6353 6980 -17 3 1348 1282 56 61 11 chr1 100024280 100024461 -97170971 + B2_Mm2 SINE B2 2 191 -4 3 1348 1430 234 38 95 chr1 100024461 100024477 -97170955 + MTD LTR MaLR 211 216 -203 3 1348 639 84 0 0 chr1 100024477 100024572 -97170860 + (GA)n Simple_repeat Simple_repeat 2 96 0 3 1348 1430 234 38 95 chr1 100024572 100024783 -97170649 + MTD LTR MaLR 217 418 -1 3 1348 3873 229 119 52 chr1 100024785 100024962 -97170470 + MTD-int LTR MaLR 3 178 -1080 3 1348 1221 186 168 68 chr1 100024962 100025302 -97170130 + ORR1D1 LTR MaLR 1 374 0 3 1348 3873 229 119 52 chr1 100025302 100026301 -97169131 + MTD-int LTR MaLR 179 1258 0 3 1348 423 0 0 0 chr1 100026301 100026348 -97169084 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1348 411 104 0 20 chr1 100026356 100026441 -97168991 + B1_Mur4 SINE Alu 71 150 0 4 1348 667 246 106 58 chr1 100026462 100026624 -97168808 + MTD LTR MaLR 68 239 -180 4 1348 444 173 141 59 chr1 100026624 100026759 -97168673 - URR1A DNA MER1_type -2 224 79 4 1348 585 205 111 42 chr1 100026801 100026969 -97168463 + MTD LTR MaLR 246 411 -8 4 1348 297 0 0 0 chr1 100027033 100027066 -97168366 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1348 462 276 30 101 chr1 100027120 100027289 -97168143 - B4A SINE B4 -66 226 70 4 1348 270 263 107 39 chr1 100027274 100027377 -97168055 - BC1_Mm scRNA scRNA -28 124 15 4 1348 388 256 0 23 chr1 100027305 100027393 -97168039 - B4 SINE B4 -206 86 1 4 1348 263 337 78 29 chr1 100027519 100027724 -97167708 + MIRb SINE MIR 1 215 -53 4 1348 230 301 14 0 chr1 100028769 100028842 -97166590 + GA-rich Low_complexity Low_complexity 2 75 0 4 1348 24 32 0 0 chr1 100029806 100029837 -97165595 + AT_rich Low_complexity Low_complexity 1 31 0 4 1348 797 332 86 21 chr1 100030121 100030540 -97164892 - MLT1D LTR MaLR -59 446 1 5 1348 502 225 110 52 chr1 100030850 100030986 -97164446 - B1F2 SINE Alu 0 149 6 5 1348 298 285 141 128 chr1 100030853 100031002 -97164430 - B4 SINE B4 -69 223 73 5 1348 188 317 53 61 chr1 100031030 100031161 -97164271 + L2 LINE L2 720 849 -2570 5 1348 291 269 32 11 chr1 100031365 100031459 -97163973 + MLT1A1 LTR MaLR 281 376 -32 5 1348 1886 148 79 27 chr1 100031478 100031846 -97163586 + ORR1B1 LTR MaLR 2 388 -6 5 1348 263 108 0 0 chr1 100031855 100031892 -97163540 + ORR1A4 LTR MaLR 293 329 0 5 1348 312 161 0 0 chr1 100032361 100032423 -97163009 + CT-rich Low_complexity Low_complexity 2 63 0 5 1348 438 20 0 0 chr1 100032650 100032701 -97162731 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1348 1992 179 216 24 chr1 100032930 100033429 -97162003 - RMER19B LTR ERVK 0 902 308 5 1348 1374 51 0 0 chr1 100033869 100034044 -97161388 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 6 1348 2893 108 96 4 chr1 100034596 100035053 -97160379 + Lx3B LINE L1 6473 6971 -2 6 1348 372 94 0 0 chr1 100035254 100035307 -97160125 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1348 485 306 33 0 chr1 100035331 100035452 -97159980 - RSINE1 SINE B4 -16 149 25 6 1348 304 256 178 0 chr1 100035614 100035704 -97159728 - PB1D10 SINE Alu -7 110 5 6 1348 1450 242 48 9 chr1 100036834 100037243 -97158189 - RMER15 LTR ERVL -1 574 90 6 1348 22 0 0 0 chr1 100037419 100037441 -97157991 + AT_rich Low_complexity Low_complexity 1 22 0 6 1348 225 0 0 0 chr1 100038017 100038042 -97157390 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1348 1047 158 113 5 chr1 100038043 100038247 -97157185 - URR1A DNA MER1_type 0 226 1 6 1348 243 0 0 0 chr1 100038265 100038292 -97157140 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1348 269 362 8 15 chr1 100038823 100038955 -97156477 + MIRb SINE MIR 31 161 -107 7 1348 207 0 0 0 chr1 100039028 100039051 -97156381 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1348 1038 157 0 0 chr1 100039140 100039616 -97155816 + (TG)n Simple_repeat Simple_repeat 1 476 0 7 1348 185 236 0 52 chr1 100040066 100040124 -97155308 + L2c LINE L2 3329 3383 -4 7 1348 530 295 79 23 chr1 100041522 100041699 -97153733 + B3A SINE B2 30 216 0 7 1348 25 31 0 0 chr1 100041713 100041745 -97153687 + AT_rich Low_complexity Low_complexity 1 32 0 7 1348 476 286 28 7 chr1 100042310 100042451 -97152981 + B1F1 SINE Alu 1 144 -5 7 1348 602 281 30 50 chr1 100042453 100042708 -97152724 + MLT1A1 LTR MaLR 151 388 -20 7 1348 240 89 178 0 chr1 100042770 100042815 -97152617 - B1_Mur2 SINE Alu -26 123 71 7 1348 345 47 0 0 chr1 100042862 100042905 -97152527 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1348 730 345 27 44 chr1 100042915 100043209 -97152223 - B4 SINE B4 -2 290 2 8 1348 318 19 18 53 chr1 100043219 100043276 -97152156 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 8 1348 1185 48 0 13 chr1 100043276 100043425 -97152007 - B1_Mm SINE Alu 0 147 1 8 1348 380 286 10 10 chr1 100044438 100044537 -97150895 + PB1D10 SINE Alu 1 99 -18 8 1348 542 137 0 10 chr1 100044548 100044644 -97150788 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 8 1348 313 172 0 0 chr1 100044705 100044763 -97150669 + Lx5 LINE L1 5988 6045 -1005 8 1348 3147 61 13 0 chr1 100044912 100045307 -97150125 - MTB LTR MaLR 0 400 1 8 1348 252 0 0 0 chr1 100045351 100045379 -97150053 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1348 800 50 0 0 chr1 100045405 100045505 -97149927 - B1_Mus2 SINE Alu 0 147 48 8 1348 330 148 32 32 chr1 100045450 100045513 -97149919 - MT2B LTR ERVL -344 257 195 8 1348 834 268 130 52 chr1 100046247 100046594 -97148838 - ORR1D1 LTR MaLR 0 374 1 9 1348 732 210 48 36 chr1 100046595 100046763 -97148669 - ORR1D1-int LTR MaLR -1 1369 1200 9 1348 269 208 0 13 chr1 100046765 100046843 -97148589 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1348 204 40 0 0 chr1 100046848 100046873 -97148559 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1348 2223 215 95 126 chr1 100046874 100047157 -97148275 - ORR1D1-int LTR MaLR -191 1179 979 9 1348 853 72 35 23 chr1 100047157 100047329 -97148103 + (TCTCTG)n Simple_repeat Simple_repeat 2 175 0 9 1348 2223 215 95 126 chr1 100047329 100047769 -97147663 - ORR1D1-int LTR MaLR -392 978 478 9 1348 244 309 39 96 chr1 100047985 100048089 -97147343 + PB1 SINE Alu 12 109 -18 9 1348 2225 144 28 34 chr1 100050006 100050394 -97145038 + ORR1B1 LTR MaLR 1 386 -8 9 1348 5781 160 41 25 chr1 100050399 100051516 -97143916 + ORR1B1-int LTR MaLR 2 1136 -122 9 1348 227 43 104 42 chr1 100051517 100051565 -97143867 + ORR1B1-int LTR MaLR 1103 1153 -105 9 1348 1281 172 44 109 chr1 100051571 100051773 -97143659 - MTC LTR MaLR -164 257 73 9 1348 5187 141 50 2 chr1 100051773 100052578 -97142854 - Lx4A LINE L1 -1 7057 6215 9 1348 1281 172 44 109 chr1 100052578 100052649 -97142783 - MTC LTR MaLR -349 72 2 9 1348 200 61 0 57 chr1 100052921 100052956 -97142476 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 9 1348 286 311 19 0 chr1 100053171 100053277 -97142155 - L1M2 LINE L1 -1949 4194 4087 9 1348 797 314 65 16 chr1 100053320 100053643 -97141789 - LTR82A LTR ERVL -447 425 87 1 1348 231 354 62 66 chr1 100053496 100053768 -97141664 - LTR82B Low_complexity ERVL -559 271 1 1 1348 265 333 107 50 chr1 100053768 100054049 -97141383 - MLT1L LTR MaLR -108 502 206 1 1348 2626 86 16 8 chr1 100055010 100055385 -97140047 + L1_Mus1 LINE L1 6190 6567 0 1 1348 22 35 0 0 chr1 100055479 100055508 -97139924 + AT_rich Low_complexity Low_complexity 1 29 0 1 1348 6642 44 10 1 chr1 100056436 100057237 -97138195 - RLTR13C2 LTR ERVK 0 808 1 1 1348 244 319 173 56 chr1 100057606 100057872 -97137560 + MLT1K LTR MaLR 161 457 -138 1 1348 884 9 0 0 chr1 100058390 100058503 -97136929 + L1Md_A LINE L1 6470 6582 0 1 1348 712 306 118 44 chr1 100059828 100060191 -97135241 + MLT1B LTR MaLR 1 390 0 1 1348 486 329 119 69 chr1 100060240 100060602 -97134830 - MLT1A1 LTR MaLR 0 408 29 1 1348 895 77 23 23 chr1 100060655 100060828 -97134604 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 1 1348 835 244 57 62 chr1 100061438 100061630 -97133802 + B3 SINE B2 2 192 -3 1 1348 1997 241 116 98 chr1 100061968 100062853 -97132579 + RMER1C Other Other 336 1241 -101 1 1348 360 0 0 0 chr1 100062853 100062893 -97132539 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1348 1997 241 116 98 chr1 100062893 100062996 -97132436 + RMER1C Other Other 1242 1342 0 1 1348 1355 15 15 10 chr1 100063402 100063602 -97131830 + (TCTA)n Simple_repeat Simple_repeat 1 201 0 1 1348 25 31 0 0 chr1 100064345 100064377 -97131055 + AT_rich Low_complexity Low_complexity 1 32 0 1 1348 734 109 8 0 chr1 100065215 100065334 -97130098 + (GAAA)n Simple_repeat Simple_repeat 3 122 0 1 1348 2185 84 52 0 chr1 100067641 100067951 -97127481 - ORR1A2 LTR MaLR 0 327 2 1 1348 345 363 0 7 chr1 100068012 100068159 -97127273 + MIRb SINE MIR 4 149 -119 1 1348 285 306 234 0 chr1 100068257 100068368 -97127064 - B1F SINE Alu -12 137 1 1 1348 243 0 0 0 chr1 100069232 100069259 -97126173 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 1348 1937 89 61 22 chr1 100069259 100069570 -97125862 - Lx LINE L1 -12 6642 6320 1 1348 1001 81 7 0 chr1 100069714 100069862 -97125570 + L1Md_F2 LINE L1 6432 6580 -2 1 1348 1499 180 27 0 chr1 100070016 100070272 -97125160 + MTC LTR MaLR 3 265 -156 1 1348 1372 283 101 13 chr1 100072219 100072695 -97122737 - MLT2B1 LTR ERVL 0 520 3 1 1348 218 286 0 32 chr1 100072772 100072866 -97122566 + CT-rich Low_complexity Low_complexity 2 92 0 1 1348 1348 264 68 16 chr1 100073197 100073566 -97121866 - MTD LTR MaLR -14 405 18 1 1348 360 97 0 0 chr1 100073610 100073672 -97121760 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1 1348 1741 138 0 0 chr1 100073684 100073938 -97121494 + ORR1A2 LTR MaLR 1 254 -73 1 1348 528 311 119 22 chr1 100074018 100074389 -97121043 - Lx9 LINE L1 -13 7631 7225 1 1348 1045 88 0 0 chr1 100074505 100074642 -97120790 + B1_Mm SINE Alu 2 138 -9 1 1348 216 0 0 0 chr1 100074642 100074666 -97120766 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1348 459 35 0 0 chr1 100074763 100074820 -97120612 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 1 1348 771 266 135 0 chr1 100075193 100075422 -97120010 - B4A SINE B4 -6 286 27 1 1348 1510 35 0 39 chr1 100075499 100075707 -97119725 + L1Md_F3 LINE L1 6384 6583 -1 1 1348 533 36 48 0 chr1 100076347 100076431 -97119001 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 1348 279 313 16 27 chr1 100076433 100076567 -97118865 - MLT1B LTR MaLR -205 185 46 1 1348 201 161 0 0 chr1 100076760 100076791 -97118641 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1 1348 267 31 0 0 chr1 100077463 100077495 -97117937 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 1 1348 1018 90 17 17 chr1 100077495 100077675 -97117757 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1348 789 167 11 6 chr1 100077693 100077868 -97117564 + CT-rich Low_complexity Low_complexity 3 178 0 1 1348 461 288 0 8 chr1 100078092 100078211 -97117221 + B1F SINE Alu 23 140 -9 1 1348 201 322 57 29 chr1 100078757 100078880 -97116552 - MIR SINE MIR -8 260 119 1 1348 2939 84 5 2 chr1 100078880 100079275 -97116157 + MTA_Mm LTR MaLR 1 396 0 1 1348 195 354 202 19 chr1 100079275 100079364 -97116068 - MIRb SINE MIR -150 118 9 1 1348 22 0 0 0 chr1 100079535 100079557 -97115875 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 2163 40 18 4 chr1 100079557 100079833 -97115599 - L1Md_F3 LINE L1 -2 6582 6303 1 1348 2940 48 0 0 chr1 100079833 100080209 -97115223 + L1Md_T LINE L1 5821 6196 -386 1 1348 258 192 0 0 chr1 100080865 100080917 -97114515 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1348 634 304 135 21 chr1 100081381 100081670 -97113762 - MLT1A0 LTR MaLR -21 344 23 1 1348 326 286 43 26 chr1 100082286 100082401 -97113031 + PB1D10 SINE Alu 1 117 0 1 1348 339 304 31 86 chr1 100082752 100082914 -97112518 + HAL1-3A_ME LINE L1 2286 2438 -420 1 1348 247 82 0 75 chr1 100082916 100082969 -97112463 + G-rich Low_complexity Low_complexity 4 52 0 1 1348 706 209 7 20 chr1 100084482 100084633 -97110799 + B1_Mur4 SINE Alu 1 149 -1 1 1348 211 248 316 22 chr1 100085138 100085274 -97110158 + MIRb SINE MIR 93 268 0 1 1348 189 250 0 22 chr1 100085346 100085391 -97110041 + MIRm SINE MIR 221 264 -12 1 1348 482 368 70 30 chr1 100085694 100086123 -97109309 + MT2A LTR ERVL 2 447 -86 1 1348 354 330 9 0 chr1 100086374 100086480 -97108952 - PB1D7 SINE Alu -12 108 2 1 1348 239 0 0 31 chr1 100090057 100090089 -97105343 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1 1348 2632 251 62 37 chr1 100090284 100091342 -97104090 + Lx9 LINE L1 5677 6851 -793 1 1348 4177 223 62 63 chr1 100091428 100092645 -97102787 - RMER12 LTR ERVK -106 1216 1 1 1348 1872 219 89 36 chr1 100092653 100093202 -97102230 + Lx9 LINE L1 6900 7477 -167 1 1348 289 214 79 18 chr1 100093216 100093330 -97102102 + Lx9 LINE L1 7516 7636 -8 1 1348 2349 152 27 33 chr1 100093771 100094220 -97101212 + RLTR20D LTR ERVK 1 446 -122 1 1348 380 129 16 0 chr1 100094216 100094278 -97101154 + ORR1A2 LTR MaLR 256 318 -9 1 1348 6436 146 73 36 chr1 100094283 100095566 -97099866 + ORR1A2-int LTR MaLR 1 1331 -632 1 1348 2620 41 3 0 chr1 100095564 100095883 -97099549 + IAPEY2_LTR LTR ERVK 38 357 0 1 1348 3526 143 21 2 chr1 100095883 100096445 -97098987 + ORR1A2-int LTR MaLR 1391 1963 0 1 1348 2108 101 3 84 chr1 100096445 100096792 -97098640 + ORR1A2 LTR MaLR 1 319 -8 1 1348 754 147 62 0 chr1 100097015 100097144 -97098288 + RMER19B LTR ERVK 1 137 -765 1 1348 743 192 0 0 chr1 100097122 100097246 -97098186 + RMER19B LTR ERVK 56 179 -723 1 1348 570 210 79 24 chr1 100097246 100097335 -97098097 - RLTR20A2 LTR ERVK 0 578 492 1 1348 360 0 0 0 chr1 100097335 100097375 -97098057 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1348 570 210 79 24 chr1 100097375 100097412 -97098020 - RLTR20A2 LTR ERVK -87 491 446 1 1348 1078 158 220 0 chr1 100097415 100097710 -97097722 - MYSERV16_I-int LTR ERVK -702 1624 1265 1 1348 33913 45 0 3 chr1 100097711 100103102 -97092330 + L1Md_T LINE L1 119 5589 -297 1 1348 8326 43 0 0 chr1 100103102 100104098 -97091334 + L1Md_T LINE L1 5590 6585 0 1 1348 535 309 80 26 chr1 100104388 100104614 -97090818 - RLTR16 LTR ERVK -236 269 32 1 1348 1180 109 10 5 chr1 100104632 100104835 -97090597 - MYSERV16_I-int LTR ERVK -1056 1270 1067 1 1348 686 196 29 96 chr1 100104840 100105049 -97090383 - MYSERV16_I-int LTR ERVK -1393 933 739 1 1348 2511 210 74 2 chr1 100105049 100105590 -97089842 + RMER1B Other Other 16 913 -153 1 1348 791 144 7 0 chr1 100105603 100105742 -97089690 + CT-rich Low_complexity Low_complexity 3 142 0 1 1348 476 210 36 7 chr1 100105744 100105883 -97089549 + RMER1B Other Other 924 1066 0 1 1348 269 290 0 0 chr1 100106273 100106342 -97089090 + MIR SINE MIR 120 188 -74 1 1348 3882 180 52 24 chr1 100106363 100106460 -97088972 + L1_Mur3 LINE L1 2303 2397 -3483 1 1348 1267 183 5 0 chr1 100106460 100106684 -97088748 - URR1B DNA MER1_type 0 225 1 1 1348 3882 180 52 24 chr1 100106684 100107257 -97088175 + L1_Mur3 LINE L1 2398 2987 -2893 1 1348 414 0 0 0 chr1 100107257 100107303 -97088129 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1348 3882 180 52 24 chr1 100107303 100107617 -97087815 + L1_Mur3 LINE L1 2988 3315 -2565 1 1348 18308 164 19 13 chr1 100107635 100113063 -97082369 + L1_Mus2 LINE L1 550 5963 -603 1 1348 2054 184 14 0 chr1 100113056 100113480 -97081952 + L1_Mm LINE L1 4913 5342 -541 1 1348 3237 29 3 3 chr1 100113591 100113975 -97081457 + L1Md_F2 LINE L1 6197 6580 -2 1 1348 4101 223 63 48 chr1 100114107 100114409 -97081023 + Lx7 LINE L1 4414 4720 -1160 1 1348 405 0 0 0 chr1 100114409 100114454 -97080978 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1 1348 4101 223 63 48 chr1 100114454 100114881 -97080551 + Lx7 LINE L1 4721 5144 -736 1 1348 747 87 0 0 chr1 100114881 100114985 -97080447 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 1 1348 6015 225 90 49 chr1 100114985 100117228 -97078204 + Lx7 LINE L1 5145 7490 -206 1 1348 547 271 14 36 chr1 100117878 100117910 -97077522 + B3A SINE B2 11 42 -156 1 1348 1094 251 101 48 chr1 100117910 100118265 -97077167 + ORR1D1 LTR MaLR 1 374 0 1 1348 547 271 14 36 chr1 100118265 100118370 -97077062 + B3A SINE B2 43 145 -53 1 1348 405 0 0 0 chr1 100118395 100118440 -97076992 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1348 376 205 42 25 chr1 100119377 100119497 -97075935 - Lx9 LINE L1 0 7644 7523 1 1348 246 64 0 21 chr1 100119482 100119530 -97075902 - L1Md_F2 LINE L1 -8 6574 6528 1 1348 839 201 54 9 chr1 100119566 100119787 -97075645 - Lx9 LINE L1 -130 7514 7284 1 1348 1899 211 66 4 chr1 100119789 100120241 -97075191 + Lx9 LINE L1 6796 7275 -369 1 1348 3734 166 64 123 chr1 100120271 100121189 -97074243 + RMER19B LTR ERVK 1 864 -38 1 1348 945 162 43 29 chr1 100121190 100121400 -97074032 + Lx LINE L1 6440 6652 -2 1 1348 319 318 0 15 chr1 100121953 100122087 -97073345 - Lx9 LINE L1 -600 7044 6913 1 1348 1275 224 171 30 chr1 100122089 100122439 -97072993 + Lx9 LINE L1 7098 7473 -171 1 1348 678 85 0 0 chr1 100122439 100122533 -97072899 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1348 1275 224 171 30 chr1 100122533 100122655 -97072777 + Lx9 LINE L1 7474 7637 -7 1 1348 7657 147 32 14 chr1 100123417 100125690 -97069742 - Lx4A LINE L1 -4 7054 4734 1 1348 1699 227 0 37 chr1 100125687 100126090 -97069342 - L1_Mur2 LINE L1 -6169 543 156 1 1348 187 235 40 81 chr1 100126150 100126224 -97069208 + L3 LINE CR1 1041 1111 -3378 1 1348 738 240 86 1 chr1 100127577 100127763 -97067669 - MTC LTR MaLR 0 421 201 1 1348 8550 166 55 1 chr1 100127763 100129366 -97066066 - MERVL_2A-int LTR ERVL -2713 3048 1359 1 1348 3918 188 19 12 chr1 100129358 100130017 -97065415 + MERVL_2A-int LTR ERVL 4762 5417 -344 1 1348 3149 57 25 0 chr1 100130017 100130418 -97065014 - RLTR10A LTR ERVK 0 411 1 1 1348 3918 188 19 12 chr1 100130418 100130532 -97064900 + MERVL_2A-int LTR ERVL 5418 5541 -220 1 1348 228 130 0 61 chr1 100130548 100130597 -97064835 + ORR1A3-int LTR MaLR 579 624 -1339 1 1348 557 212 29 0 chr1 100130597 100130734 -97064698 + MERVL_2A-int LTR ERVL 5621 5761 0 1 1348 843 294 113 68 chr1 100130734 100131176 -97064256 + MT2A LTR ERVL 1 462 -71 1 1348 216 0 0 0 chr1 100131194 100131218 -97064214 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1348 30632 83 4 11 chr1 100131601 100136598 -97058834 + L1Md_F2 LINE L1 225 5585 -298 1 1348 7292 82 4 7 chr1 100136599 100137586 -97057846 + L1Md_F2 LINE L1 5587 6570 -12 1 1348 330 280 21 0 chr1 100138216 100138359 -97057073 - Lx9 LINE L1 -7 7637 7492 2 1348 2584 182 38 24 chr1 100138435 100139008 -97056424 - Lx9 LINE L1 -130 7514 6934 2 1349 3059 106 0 2 chr1 100139008 100139479 -97055953 + L1Md_A LINE L1 667 1136 -5588 2 1349 2995 55 3 0 chr1 100139477 100139862 -97055570 + L1_Mm LINE L1 5410 5795 -88 2 1349 4791 38 2 0 chr1 100139862 100140435 -97054997 + L1Md_F3 LINE L1 6009 6582 -2 2 1349 1004 186 10 0 chr1 100140437 100140631 -97054801 - Lx9 LINE L1 -699 6945 6750 2 1349 1503 225 6 0 chr1 100140663 100140974 -97054458 - Lx9 LINE L1 -991 6653 6341 2 1349 1849 175 99 7 chr1 100140977 100141392 -97054040 + Lx3C LINE L1 6510 6962 -14 2 1349 1514 227 74 30 chr1 100141454 100141795 -97053637 - Lx9 LINE L1 -1592 6052 5652 2 1349 396 0 0 0 chr1 100141795 100141839 -97053593 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1349 1560 122 19 4 chr1 100141839 100142095 -97053337 - Lx LINE L1 -11 6643 6384 2 1349 1514 216 54 26 chr1 100142095 100142303 -97053129 - Lx9 LINE L1 -196 5651 5450 2 1349 255 208 146 36 chr1 100142291 100142401 -97053031 - Lx9 LINE L1 -3264 2583 2462 2 1349 1063 83 0 20 chr1 100142401 100142549 -97052883 + B1_Mm SINE Alu 1 145 -2 2 1349 262 61 20 20 chr1 100142550 100142600 -97052832 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 2 1349 815 254 0 2 chr1 100142608 100142816 -97052616 - Lx9 LINE L1 -3372 2475 2277 2 1349 1065 90 0 0 chr1 100142831 100143008 -97052424 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 2 1349 835 179 11 0 chr1 100143009 100143299 -97052133 + CT-rich Low_complexity Low_complexity 1 293 0 2 1349 1008 302 66 64 chr1 100143384 100144438 -97050994 - L1M2 LINE L1 -1070 5073 4017 2 1349 1655 129 15 30 chr1 100144439 100144774 -97050658 - L1_Mur2 LINE L1 -2471 3406 3077 2 1349 363 224 11 101 chr1 100144783 100144962 -97050470 + Lx6 LINE L1 5973 6135 -1325 2 1349 469 233 102 7 chr1 100145051 100145198 -97050234 - RMER15 LTR ERVL -18 557 397 2 1349 252 0 0 0 chr1 100146483 100146511 -97048921 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1349 231 36 0 0 chr1 100146969 100146997 -97048435 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1349 307 287 81 16 chr1 100147198 100147322 -97048110 + L3b LINE CR1 2 133 -349 2 1349 2247 88 164 0 chr1 100147487 100147840 -97047592 - IAPLTR2a LTR ERVK 0 411 1 2 1349 375 247 107 190 chr1 100148880 100149085 -97046347 + B3 SINE B2 2 189 -6 2 1349 3022 77 10 5 chr1 100149093 100149496 -97045936 - L1Md_F2 LINE L1 -4 6578 6174 2 1349 238 341 95 26 chr1 100149584 100149774 -97045658 + MIR SINE MIR 2 204 -58 2 1349 26 0 0 0 chr1 100149874 100149900 -97045532 + AT_rich Low_complexity Low_complexity 1 26 0 2 1349 1730 267 105 6 chr1 100150247 100150725 -97044707 + MTE2b-int LTR MaLR 1055 1579 -1 2 1349 989 277 194 0 chr1 100150726 100151040 -97044392 + MTE2b LTR MaLR 1 375 -4 2 1349 5119 59 0 1 chr1 100151693 100152343 -97043089 - L1Md_F2 LINE L1 -1 6581 5933 2 1349 4528 37 0 2 chr1 100152341 100152879 -97042553 - L1Md_T LINE L1 0 6582 6046 2 1349 13237 93 32 4 chr1 100152905 100155382 -97040050 - L1_Mus3 LINE L1 -6 6632 4053 2 1349 698 292 32 38 chr1 100155633 100155978 -97039454 + L1_Mur3 LINE L1 807 1149 -6579 2 1349 1918 203 25 28 chr1 100155981 100156381 -97039051 - MTB_Mm LTR MaLR -8 399 1 2 1349 256 247 75 0 chr1 100156383 100156476 -97038956 + L1_Mur3 LINE L1 1146 1245 -6483 2 1349 204 97 0 0 chr1 100156480 100156511 -97038921 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 2 1349 3465 59 2 0 chr1 100156525 100156964 -97038468 - L1Md_F2 LINE L1 -14 6568 6129 2 1349 1376 248 92 16 chr1 100156974 100157561 -97037871 + Lx6 LINE L1 5751 6405 -645 2 1349 4404 183 62 42 chr1 100157564 100158448 -97036984 + RMER19B LTR ERVK 1 902 0 2 1349 611 308 45 60 chr1 100158448 100158567 -97036865 + Lx6 LINE L1 6621 6736 -724 2 1349 246 32 0 0 chr1 100158567 100158598 -97036834 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1349 1186 292 67 9 chr1 100158598 100159017 -97036415 + Lx6 LINE L1 6455 6882 -578 2 1349 189 0 0 0 chr1 100159351 100159372 -97036060 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 1349 1515 200 28 60 chr1 100159461 100159510 -97035922 + L1_Mur3 LINE L1 1259 1309 -4571 2 1349 212 0 36 0 chr1 100159510 100159538 -97035894 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1349 1515 200 28 60 chr1 100159538 100159988 -97035444 + L1_Mur3 LINE L1 1310 1741 -4139 2 1349 3967 209 34 14 chr1 100161291 100162327 -97033105 + L1_Mur3 LINE L1 1756 2812 -3068 2 1349 281 226 10 78 chr1 100162493 100162685 -97032747 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 1349 37 62 0 0 chr1 100162876 100162941 -97032491 + AT_rich Low_complexity Low_complexity 1 65 0 2 1349 1796 189 125 51 chr1 100164449 100164574 -97030858 - Lx7 LINE L1 -2 7694 7557 2 1349 279 0 0 0 chr1 100164574 100164605 -97030827 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2 1349 1796 189 125 51 chr1 100164605 100165049 -97030383 - Lx7 LINE L1 -140 7556 7083 2 1349 399 252 140 0 chr1 100165094 100165201 -97030231 - Lx6 LINE L1 -451 7009 6888 2 1349 1857 125 55 82 chr1 100165205 100165572 -97029860 + RLTR14 LTR ERV1 1 357 -25 2 1349 2119 196 70 0 chr1 100165586 100166029 -97029403 - Lx7 LINE L1 -797 6899 6426 2 1349 379 292 41 0 chr1 100166825 100166996 -97028436 - L1MA6 LINE L1 -1 6299 6122 2 1349 329 214 20 10 chr1 100167170 100167269 -97028163 - L1MA6 LINE L1 -453 5847 5748 2 1349 1579 203 49 50 chr1 100167282 100167780 -97027652 - RMER13B LTR ERVK -4 904 1 2 1349 324 253 187 24 chr1 100167850 100168016 -97027416 - L1M4 LINE L1 -2192 3954 3762 2 1349 424 141 16 55 chr1 100168050 100168178 -97027254 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 2 1349 1044 90 7 20 chr1 100169025 100169173 -97026259 + B1_Mus1 SINE Alu 3 148 0 2 1349 1086 131 0 6 chr1 100170132 100170309 -97025123 + Lx LINE L1 6479 6654 0 2 1349 360 0 0 0 chr1 100170838 100170878 -97024554 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1349 255 61 0 0 chr1 100170878 100170910 -97024522 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1349 226 242 227 0 chr1 100171491 100171557 -97023875 + B1_Mus1 SINE Alu 39 119 -29 2 1349 245 291 0 0 chr1 100171523 100171578 -97023854 + B1F1 SINE Alu 87 141 -8 2 1349 369 0 0 0 chr1 100171801 100171842 -97023590 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1349 189 272 95 32 chr1 100171859 100171954 -97023478 - MIRb SINE MIR -131 137 37 2 1349 261 318 44 22 chr1 100172509 100172644 -97022788 - LTR16C LTR ERVL 0 489 352 2 1349 386 333 32 48 chr1 100172847 100173033 -97022399 - MIRc SINE MIR -24 244 62 2 1349 363 211 335 18 chr1 100174636 100174800 -97020632 + B3 SINE B2 1 216 0 2 1349 246 32 0 0 chr1 100175222 100175253 -97020179 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1349 371 369 60 56 chr1 100175257 100175507 -97019925 - B4A SINE B4 -22 270 20 2 1349 21 57 0 0 chr1 100176771 100176806 -97018626 + AT_rich Low_complexity Low_complexity 1 35 0 2 1349 25 0 0 0 chr1 100178949 100178974 -97016458 + AT_rich Low_complexity Low_complexity 1 25 0 2 1349 759 257 0 13 chr1 100178985 100179135 -97016297 - RSINE1 SINE B4 -12 153 6 2 1349 25 31 0 0 chr1 100179311 100179343 -97016089 + AT_rich Low_complexity Low_complexity 1 32 0 2 1349 420 111 0 0 chr1 100179750 100179813 -97015619 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1349 31 68 0 0 chr1 100179986 100180045 -97015387 + AT_rich Low_complexity Low_complexity 1 59 0 2 1349 10104 180 50 13 chr1 100180179 100183423 -97012009 + L1Md_A LINE L1 441 3813 -2064 2 1349 1202 191 73 65 chr1 100183423 100183948 -97011484 + RLTR6_Mm LTR ERV1 1 589 -65 2 1349 58675 34 12 0 chr1 100183963 100191532 -97003900 + RLTR6-int LTR ERV1 1 7778 0 2 1349 1229 192 74 66 chr1 100191532 100192054 -97003378 + RLTR6_Mm LTR ERV1 1 586 -68 2 1349 13107 60 2 0 chr1 100192054 100193820 -97001612 + L1Md_F3 LINE L1 3818 5587 -296 2 1349 7814 55 2 9 chr1 100193821 100194821 -97000611 + L1Md_F3 LINE L1 5589 6581 -3 2 1349 407 321 63 31 chr1 100196114 100196368 -96999064 - L1MEf LINE L1 -5064 1136 875 2 1349 3386 106 20 11 chr1 100197139 100197675 -96997757 - Lx3C LINE L1 -606 6370 5830 2 1349 3686 108 30 30 chr1 100197675 100198275 -96997157 + Lx3C LINE L1 6377 6976 0 2 1349 1286 205 70 26 chr1 100198774 100199233 -96996199 + RMER19C LTR ERVK 16 611 0 2 1349 1002 215 59 55 chr1 100200441 100200697 -96994735 - MTC LTR MaLR -164 257 1 2 1349 303 342 24 61 chr1 100201874 100202039 -96993393 + RSINE1 SINE B4 3 161 -4 2 1349 219 69 0 0 chr1 100202042 100202071 -96993361 + (ATGGTG)n Simple_repeat Simple_repeat 4 32 0 2 1349 323 333 47 38 chr1 100202127 100202233 -96993199 + ORR1E LTR MaLR 14 120 -254 2 1349 233 321 64 9 chr1 100202350 100202460 -96992972 + ORR1E LTR MaLR 264 379 0 2 1349 258 270 27 0 chr1 100202626 100202700 -96992732 - MER5A DNA MER1_type -113 76 1 2 1349 970 214 38 180 chr1 100202709 100203154 -96992278 + ORR1C2 LTR MaLR 1 382 -2 2 1349 822 235 286 23 chr1 100203219 100203520 -96991912 - Lx7 LINE L1 -828 6868 6489 2 1349 246 281 0 0 chr1 100203517 100203599 -96991833 + Lx7 LINE L1 7232 7313 -383 2 1349 402 244 0 0 chr1 100203856 100203938 -96991494 - MER5A DNA MER1_type -107 82 1 2 1349 1300 132 0 19 chr1 100204109 100204325 -96991107 + Lx3C LINE L1 6666 6877 -99 2 1349 375 231 18 9 chr1 100204362 100204471 -96990961 + Lx3C LINE L1 6865 6974 -2 2 1349 459 0 0 0 chr1 100204481 100204532 -96990900 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1349 271 220 50 92 chr1 100204557 100204677 -96990755 - URR1B DNA MER1_type -1 224 110 2 1349 1088 261 60 17 chr1 100205709 100206126 -96989306 + L1MA5 LINE L1 5491 5925 -375 2 1349 348 138 0 0 chr1 100206150 100206215 -96989217 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1349 753 326 48 4 chr1 100206379 100206650 -96988782 + RLTR16 LTR ERVK 16 298 -207 2 1349 197 235 134 12 chr1 100207191 100207273 -96988159 + L2c LINE L2 3290 3381 -6 2 1349 180 335 175 23 chr1 100207306 100207483 -96987949 - L2 LINE L2 -814 2605 2402 2 1349 370 305 29 8 chr1 100207550 100207672 -96987760 - PB1D10 SINE Alu 0 147 10 2 1349 1780 290 101 15 chr1 100207774 100208232 -96987200 + Lx8 LINE L1 6314 6824 -649 2 1349 306 0 0 0 chr1 100208232 100208266 -96987166 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1349 1158 89 40 23 chr1 100208268 100208441 -96986991 - B2_Mm1t SINE B2 -15 178 3 2 1349 1780 290 101 15 chr1 100208441 100208725 -96986707 + Lx8 LINE L1 6825 7123 -350 2 1349 23 33 0 0 chr1 100209009 100209039 -96986393 + AT_rich Low_complexity Low_complexity 1 30 0 2 1349 202 212 22 45 chr1 100210338 100210427 -96985005 + A-rich Low_complexity Low_complexity 5 91 0 2 1349 4146 67 0 0 chr1 100210439 100210960 -96984472 + L1Md_T LINE L1 6062 6582 0 2 1349 25 0 0 0 chr1 100211417 100211442 -96983990 + AT_rich Low_complexity Low_complexity 1 25 0 2 1349 226 179 143 71 chr1 100211445 100211571 -96983861 + YREP_Mm Unknown Unknown 132 266 -1546 2 1349 475 321 21 7 chr1 100211479 100211620 -96983812 - ID_B1 SINE B4 -2 222 80 2 1349 2585 178 10 10 chr1 100211864 100212408 -96983024 + L1_Mur2 LINE L1 4931 5438 -439 2 1349 33691 70 3 1 chr1 100212454 100218717 -96976715 - L1Md_F2 LINE L1 -12 6570 297 2 1349 452 286 19 19 chr1 100218773 100218880 -96976552 + ID_B1 SINE B4 109 215 -9 3 1349 344 217 12 85 chr1 100219086 100219248 -96976184 + RMER16 LTR ERVK 2 277 -256 3 1349 210 283 0 0 chr1 100219333 100219386 -96976046 + B1F SINE Alu 95 147 -2 3 1349 302 312 7 59 chr1 100219390 100219526 -96975906 + BC1_Mm scRNA scRNA 6 134 -18 3 1349 326 354 91 36 chr1 100220095 100220315 -96975117 + L1_Mur2 LINE L1 5543 5774 -350 2 1349 192 77 0 0 chr1 100222242 100222268 -96973164 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1349 495 355 25 39 chr1 100222889 100223168 -96972264 + MER5C DNA MER1_type 7 281 -32 3 1349 386 50 33 0 chr1 100223698 100223758 -96971674 + (TCTCTG)n Simple_repeat Simple_repeat 3 64 0 3 1349 3033 68 2 8 chr1 100224106 100224503 -96970929 - MTA_Mm LTR MaLR 0 396 2 3 1349 414 0 0 0 chr1 100224515 100224561 -96970871 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1349 5143 150 18 11 chr1 100224570 100225411 -96970021 - Lx4A LINE L1 -12 7046 6200 3 1349 26 0 0 0 chr1 100225530 100225556 -96969876 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 215 321 86 0 chr1 100225581 100225662 -96969770 + L2c LINE L2 3300 3387 0 3 1349 20083 120 135 4 chr1 100226075 100231517 -96963915 + L1_Mus3 LINE L1 401 6632 -6 3 1349 263 257 48 41 chr1 100231518 100231664 -96963768 + ORR1B1-int LTR MaLR 607 753 -756 3 1349 1005 93 0 14 chr1 100231564 100231706 -96963726 + B1_Mm SINE Alu 7 146 -1 3 1349 234 58 37 37 chr1 100231711 100231765 -96963667 + (CAAAAA)n Simple_repeat Simple_repeat 4 57 0 3 1349 27 0 0 0 chr1 100231865 100231892 -96963540 + AT_rich Low_complexity Low_complexity 1 27 0 3 1349 433 257 0 18 chr1 100232621 100232732 -96962700 + RMER1A Other Other 909 1017 -13 3 1349 198 0 0 0 chr1 100233046 100233068 -96962364 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 3 1349 425 90 15 0 chr1 100233112 100233179 -96962253 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1349 539 29 0 14 chr1 100233179 100233248 -96962184 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1349 26 0 0 0 chr1 100233333 100233359 -96962073 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 341 331 45 7 chr1 100235029 100235184 -96960248 + RSINE1 SINE B4 1 161 -4 3 1349 4956 60 3 3 chr1 100235313 100235950 -96959482 - L1Md_F2 LINE L1 -2 6580 5944 3 1349 429 39 5 0 chr1 100235950 100236008 -96959424 + L1Md_F2 LINE L1 5865 5924 -712 3 1349 6125 40 63 4 chr1 100236034 100236792 -96958640 + RLTR13B4 LTR ERVK 1 803 0 3 1349 12836 136 38 24 chr1 100237399 100239083 -96956349 + L1VL1 LINE L1 236 1944 -1754 3 1349 7805 57 2 19 chr1 100239083 100240095 -96955337 + L1Md_F2 LINE L1 5587 6581 -1 3 1349 12836 111 8 20 chr1 100240095 100241234 -96954198 + L1VL1 LINE L1 1945 3077 -621 3 1349 16129 112 106 20 chr1 100241229 100244555 -96950877 + L1_Mus3 LINE L1 204 4242 -1641 3 1349 7219 121 12 1 chr1 100244545 100245964 -96949468 + L1_Mus3 LINE L1 5206 6636 -2 3 1349 374 312 76 46 chr1 100246022 100246153 -96949279 + RSINE1 SINE B4 14 148 -17 3 1349 276 91 0 0 chr1 100248132 100248176 -96947256 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1349 384 22 0 0 chr1 100248176 100248220 -96947212 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1349 920 124 12 12 chr1 100248323 100248486 -96946946 + Lx2 LINE L1 6808 6970 -27 3 1349 261 0 0 0 chr1 100248487 100248516 -96946916 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1349 230 56 28 0 chr1 100248715 100248751 -96946681 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 3 1349 333 0 0 0 chr1 100249249 100249286 -96946146 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1349 352 203 45 25 chr1 100249902 100250059 -96945373 + (TA)n Simple_repeat Simple_repeat 2 161 0 3 1349 205 29 0 56 chr1 100250081 100250117 -96945315 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1349 847 18 18 0 chr1 100250889 100250998 -96944434 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 3 1349 441 0 0 0 chr1 100251189 100251238 -96944194 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1349 295 287 0 50 chr1 100251341 100251462 -96943970 + MER33 DNA MER1_type 50 164 -160 3 1349 282 230 33 44 chr1 100251472 100251563 -96943869 - Lx9 LINE L1 -1237 6407 6318 3 1349 572 286 106 22 chr1 100251643 100251988 -96943444 - Lx9 LINE L1 -1367 6093 5730 3 1349 1649 259 53 65 chr1 100251981 100252729 -96942703 - Lx9 LINE L1 -321 5526 4788 3 1349 7037 137 0 25 chr1 100252732 100253942 -96941490 + L1_Mm LINE L1 2922 4101 -1782 3 1349 1581 101 8 4 chr1 100253951 100254189 -96941243 + L1_Mus3 LINE L1 6392 6630 -8 3 1349 300 194 73 64 chr1 100254229 100254339 -96941093 - L1M2 LINE L1 -1287 4856 4746 3 1349 1788 274 29 25 chr1 100254340 100254701 -96940731 + Lx9 LINE L1 6435 6798 -846 3 1349 1479 190 86 22 chr1 100254701 100255062 -96940370 + ORR1C2 LTR MaLR 1 384 0 3 1349 1788 274 29 25 chr1 100255062 100255217 -96940215 + Lx9 LINE L1 6799 6953 -691 3 1349 402 322 23 99 chr1 100255211 100255469 -96939963 - L1MA5 LINE L1 -386 5914 5661 3 1349 216 0 0 0 chr1 100255469 100255493 -96939939 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 1349 268 322 23 100 chr1 100255493 100255507 -96939925 - L1MA5 LINE L1 -529 5660 5657 3 1349 995 62 0 53 chr1 100255507 100255659 -96939773 - L1_Mus2 LINE L1 0 6566 6423 3 1349 268 322 23 100 chr1 100255659 100255737 -96939695 - L1MA5 LINE L1 -533 5656 5590 3 1349 28 29 0 0 chr1 100256148 100256183 -96939249 + AT_rich Low_complexity Low_complexity 1 35 0 3 1349 326 319 147 0 chr1 100256265 100256456 -96938976 + MLT2B3 LTR ERVL 1 219 -335 3 1349 972 265 52 39 chr1 100256330 100256640 -96938792 + MTEa LTR MaLR 61 374 -5 3 1349 3619 188 16 38 chr1 100257057 100257358 -96938074 + RLTR17 LTR ERVK 16 313 -379 3 1349 6986 59 0 5 chr1 100257358 100258242 -96937190 + L1Md_F2 LINE L1 5691 6570 -12 3 1349 3619 188 16 38 chr1 100258242 100258632 -96936800 + RLTR17 LTR ERVK 314 692 0 3 1349 259 175 70 0 chr1 100259625 100259682 -96935750 - U2 snRNA snRNA -127 61 1 3 1349 772 352 17 43 chr1 100260397 100260697 -96934735 + B4A SINE B4 1 292 0 3 1349 624 77 0 0 chr1 100260795 100260873 -96934559 + L1Md_F2 LINE L1 5509 5586 -297 3 1349 8351 35 3 0 chr1 100260873 100261866 -96933566 + L1Md_F2 LINE L1 5587 6582 0 3 1349 35405 35 0 0 chr1 100263016 100268655 -96926777 + L1Md_Gf LINE L1 1 5589 -297 3 1349 8887 9 0 0 chr1 100268655 100269651 -96925781 + L1Md_T LINE L1 5587 6582 0 3 1349 35405 42 0 0 chr1 100269651 100269662 -96925770 + L1Md_Gf LINE L1 5590 5600 -286 3 1350 362 315 66 20 chr1 100270273 100270425 -96925007 - ID_B1 SINE B4 -64 160 2 3 1350 447 319 141 45 chr1 100270904 100271544 -96923888 - L1MEc LINE L1 -4938 1462 762 3 1350 235 373 26 13 chr1 100271573 100271649 -96923783 - ID4 SINE ID -5 78 2 3 1350 243 327 79 0 chr1 100271646 100271747 -96923685 - B1F SINE Alu -1 148 40 3 1350 303 93 0 0 chr1 100271748 100271791 -96923641 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1350 647 25 12 0 chr1 100271876 100271957 -96923475 + (TC)n Simple_repeat Simple_repeat 2 83 0 3 1350 1122 88 0 0 chr1 100272676 100272823 -96922609 + B1_Mm SINE Alu 1 147 0 3 1350 36 40 0 0 chr1 100273298 100273348 -96922084 + AT_rich Low_complexity Low_complexity 1 50 0 3 1350 1061 261 76 28 chr1 100273791 100274146 -96921286 - Lx6 LINE L1 -57 7403 7032 3 1350 1429 112 10 0 chr1 100274146 100274351 -96921081 - MURVY-LTR LTR ERV1 0 519 313 3 1350 3570 86 20 4 chr1 100274351 100274854 -96920578 - L1_Mus3 LINE L1 -48 6590 6080 3 1350 3676 101 35 2 chr1 100274858 100275402 -96920030 - L1_Mm LINE L1 -81 5802 5241 3 1350 6397 207 33 77 chr1 100275415 100277420 -96918012 - L1_Mur3 LINE L1 -2470 3410 1493 3 1350 210 243 0 72 chr1 100278125 100278201 -96917231 + A-rich Low_complexity Low_complexity 1 69 0 3 1350 414 0 0 0 chr1 100278201 100278247 -96917185 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1350 210 243 0 72 chr1 100278247 100278281 -96917151 + A-rich Low_complexity Low_complexity 70 102 0 3 1350 859 280 126 17 chr1 100278296 100278757 -96916675 - Lx7 LINE L1 -391 7305 6795 3 1350 579 186 105 0 chr1 100278782 100278954 -96916478 - L1_Mur3 LINE L1 -1983 3897 3708 3 1350 1170 230 78 35 chr1 100279014 100279438 -96915994 - Lx9 LINE L1 -39 7605 7164 3 1350 26 30 0 0 chr1 100280070 100280103 -96915329 + AT_rich Low_complexity Low_complexity 1 33 0 3 1350 862 248 163 48 chr1 100280162 100280494 -96914938 - MTD LTR MaLR 0 421 68 3 1350 2459 50 0 3 chr1 100280494 100280797 -96914635 - L1_Mus1 LINE L1 -1 6566 6265 3 1350 777 264 126 108 chr1 100280797 100280854 -96914578 - MTD LTR MaLR -339 82 25 3 1350 303 284 142 17 chr1 100280996 100281236 -96914196 - L1ME1 LINE L1 -264 5915 5646 3 1350 519 312 21 124 chr1 100281453 100281735 -96913697 + B4A SINE B4 2 254 -38 3 1350 34012 50 0 3 chr1 100281742 100287467 -96907965 + L1Md_T LINE L1 1 5589 -297 3 1350 8524 30 0 0 chr1 100287467 100288463 -96906969 + L1Md_T LINE L1 5590 6585 0 3 1350 32 0 0 0 chr1 100288463 100288495 -96906937 + AT_rich Low_complexity Low_complexity 1 32 0 3 1350 2763 138 73 2 chr1 100289156 100289620 -96905812 - Lx2 LINE L1 -1 6996 6500 3 1350 4909 134 30 2 chr1 100289620 100290459 -96904973 + Lx2 LINE L1 5622 6483 -514 3 1350 2798 89 2 10 chr1 100291368 100291767 -96903665 - MTA_Mm LTR MaLR 0 396 1 3 1350 1087 39 0 7 chr1 100291767 100291921 -96903511 - MTA_Mm-int LTR MaLR 0 1098 946 3 1350 7477 55 6 1 chr1 100291921 100293433 -96901999 - L1Md_F3 LINE L1 -1 6583 5066 3 1350 29530 57 3 5 chr1 100293431 100298114 -96897318 - L1Md_F3 LINE L1 -14 6573 1893 3 1350 3833 169 9 9 chr1 100298109 100298943 -96896489 - L1Md_F3 LINE L1 -5519 1208 414 3 1350 337 82 0 47 chr1 100298944 100299008 -96896424 - MTA_Mm-int LTR MaLR -139 959 899 3 1350 986 40 0 0 chr1 100299014 100299138 -96896294 - L1Md_F2 LINE L1 -668 5914 5791 3 1350 2772 104 1 0 chr1 100299138 100299540 -96895892 - MTA_Mm-int LTR MaLR -708 390 1 3 1350 2589 102 5 20 chr1 100299540 100299942 -96895490 - MTA_Mm LTR MaLR 0 396 1 3 1350 258 253 0 65 chr1 100300477 100300570 -96894862 + MTEa LTR MaLR 279 365 -14 3 1350 225 265 0 0 chr1 100300789 100300857 -96894575 + L1_Mur1 LINE L1 684 751 -6231 3 1350 17290 156 126 17 chr1 100300991 100305286 -96890146 + Lx3B LINE L1 674 5450 -436 3 1350 1629 229 26 0 chr1 100305283 100305672 -96889760 - Lx3C LINE L1 -502 6474 6076 3 1350 1374 137 27 31 chr1 100305681 100305857 -96889575 + Lx3B LINE L1 5657 5835 -1138 3 1350 2392 139 18 72 chr1 100305857 100306313 -96889119 + Lx2A LINE L1 6575 7005 -3 3 1350 1374 137 27 31 chr1 100306313 100306393 -96889039 + Lx3B LINE L1 5836 5912 -1061 3 1350 612 40 0 0 chr1 100306410 100306485 -96888947 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1350 1073 271 80 27 chr1 100306829 100307391 -96888041 + L1_Rod LINE L1 2066 2657 -3190 3 1350 2790 205 7 53 chr1 100307401 100307718 -96887714 + L1VL4 LINE L1 303 615 -5687 3 1350 2267 120 61 13 chr1 100307718 100308114 -96887318 - RLTR9F LTR ERVK 0 415 1 3 1350 2790 153 3 75 chr1 100308114 100308598 -96886834 + L1VL4 LINE L1 616 1071 -2488 3 1350 224 73 73 0 chr1 100308647 100308688 -96886744 + (TGGGGG)n Simple_repeat Simple_repeat 4 47 0 3 1350 1504 74 0 4 chr1 100308739 100308971 -96886461 - L1VL1 LINE L1 -5294 1128 898 4 1350 1648 97 0 32 chr1 100308971 100309217 -96886215 - L1_Mus1 LINE L1 0 6567 6330 4 1350 4329 55 7 2 chr1 100309217 100309786 -96885646 - L1_Mm LINE L1 -24 5859 5288 4 1350 36690 47 5 9 chr1 100309783 100315887 -96879545 - L1Md_A LINE L1 0 6582 484 4 1350 780 226 39 45 chr1 100315897 100316018 -96879414 + L1_Mur3 LINE L1 4078 4201 -1679 4 1350 187 31 62 0 chr1 100316018 100316050 -96879382 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1350 780 226 39 45 chr1 100316050 100316262 -96879170 + L1_Mur3 LINE L1 4202 4409 -1471 4 1350 213 227 23 0 chr1 100317528 100317572 -96877860 + CT-rich Low_complexity Low_complexity 5 49 0 4 1350 26 30 0 0 chr1 100319511 100319544 -96875888 + AT_rich Low_complexity Low_complexity 1 33 0 4 1350 274 339 85 0 chr1 100320878 100320996 -96874436 + B3A SINE B2 17 144 -54 4 1350 393 39 0 0 chr1 100321009 100321060 -96874372 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1350 230 72 33 67 chr1 100321788 100321848 -96873584 + T-rich Low_complexity Low_complexity 3 60 0 4 1350 1805 127 3 20 chr1 100321947 100322245 -96873187 - Lx2 LINE L1 -1 6996 6704 4 1350 931 66 15 0 chr1 100323215 100323351 -96872081 + (GA)n Simple_repeat Simple_repeat 1 138 0 4 1350 546 29 0 0 chr1 100325499 100325567 -96869865 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1350 6186 186 51 14 chr1 100325567 100327714 -96867718 - Lx2B LINE L1 -13 6987 4779 4 1350 2127 152 46 7 chr1 100327719 100328131 -96867301 + Lx2B LINE L1 4344 4771 -1106 4 1350 191 116 0 44 chr1 100328257 100328302 -96867130 + (TTAAA)n Simple_repeat Simple_repeat 2 44 0 4 1350 425 324 41 89 chr1 100328311 100328641 -96866791 + MLT2C2 LTR ERVL 26 366 -48 4 1350 22 35 0 0 chr1 100329037 100329066 -96866366 + AT_rich Low_complexity Low_complexity 1 29 0 4 1350 1113 250 49 7 chr1 100329120 100329527 -96865905 - L1_Mur3 LINE L1 -414 5466 5043 4 1350 306 283 159 22 chr1 100329534 100329790 -96865642 + L1_Mur3 LINE L1 5314 5598 -702 4 1350 218 333 17 0 chr1 100329811 100329871 -96865561 + B3A SINE B2 5 65 -133 4 1350 481 194 7 7 chr1 100330496 100330631 -96864801 - Lx9 LINE L1 0 7644 7510 4 1350 24373 108 14 5 chr1 100330766 100333658 -96861774 - L1_Mus2 LINE L1 0 6566 3646 4 1350 3654 84 0 0 chr1 100333658 100334133 -96861299 - MT2C_Mm LTR ERVL 0 475 1 4 1350 24373 156 48 58 chr1 100334133 100337517 -96857915 - L1_Mus2 LINE L1 -2233 3650 247 4 1350 212 59 29 0 chr1 100337577 100337611 -96857821 + (TATAA)n Simple_repeat Simple_repeat 3 37 0 4 1350 674 290 88 21 chr1 100337915 100338391 -96857041 - L1M2 LINE L1 -1097 5046 4539 4 1350 5824 132 51 121 chr1 100338386 100338926 -96856506 + Lx3B LINE L1 4669 5194 -1779 4 1350 807 114 76 8 chr1 100338926 100339058 -96856374 + B1_Mus1 SINE Alu 8 148 0 4 1350 5824 132 51 121 chr1 100339058 100339800 -96855632 + Lx3B LINE L1 5195 5920 -1053 4 1350 234 0 0 0 chr1 100340529 100340555 -96854877 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1350 439 264 147 17 chr1 100340659 100340693 -96854739 - MT2B LTR ERVL -8 593 545 4 1350 1170 70 0 0 chr1 100340693 100340850 -96854582 + (TC)n Simple_repeat Simple_repeat 2 158 0 4 1350 439 264 147 17 chr1 100340850 100340992 -96854440 - MT2B LTR ERVL -57 544 395 4 1350 494 252 19 58 chr1 100341227 100341383 -96854049 - B1_Mur4 SINE Alu 0 150 1 4 1350 288 269 45 0 chr1 100341630 100341697 -96853735 + B3A SINE B2 1 70 -128 4 1350 415 275 6 13 chr1 100341829 100342003 -96853429 + Lx6 LINE L1 5633 5819 -481 4 1350 348 24 0 0 chr1 100342129 100342170 -96853262 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1350 195 42 0 0 chr1 100342170 100342193 -96853239 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1350 33 25 0 0 chr1 100342834 100342874 -96852558 + AT_rich Low_complexity Low_complexity 1 40 0 4 1350 23 0 0 0 chr1 100344133 100344156 -96851276 + AT_rich Low_complexity Low_complexity 1 23 0 4 1350 567 0 0 0 chr1 100344256 100344319 -96851113 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1350 1068 242 16 10 chr1 100344333 100344628 -96850804 - Lx6 LINE L1 -1054 6004 5711 4 1350 22 35 0 0 chr1 100344985 100345014 -96850418 + AT_rich Low_complexity Low_complexity 1 29 0 4 1350 10423 83 7 2 chr1 100345085 100347144 -96848288 - L1Md_F2 LINE L1 -4 6578 4508 4 1350 6961 138 8 20 chr1 100347140 100349152 -96846280 - L1Md_F2 LINE L1 -3669 2214 231 4 1350 19692 105 13 13 chr1 100349158 100352935 -96842497 - L1VL1 LINE L1 -1718 4165 394 4 1350 507 288 0 25 chr1 100352969 100353126 -96842306 - L1M2 LINE L1 -1102 5041 4889 4 1350 574 204 7 14 chr1 100353132 100353271 -96842161 - L1_Mur2 LINE L1 -1163 4723 4586 4 1350 2528 178 23 2 chr1 100353268 100353796 -96841636 - L1_Mur2 LINE L1 -1746 4131 3593 4 1350 1843 231 19 33 chr1 100353809 100354289 -96841143 - MurERV4-int LTR ERVK -3578 1682 1210 4 1350 1407 217 72 25 chr1 100356569 100357168 -96838264 - MurERV4-int LTR ERVK -4042 1218 592 4 1350 782 97 0 16 chr1 100357168 100357294 -96838138 + Lx LINE L1 6528 6651 -3 4 1350 6436 68 10 0 chr1 100357340 100358165 -96837267 + L1_Mus1 LINE L1 5590 6422 -145 4 1350 243 0 0 0 chr1 100358173 100358200 -96837232 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1350 7329 49 1 2 chr1 100358345 100359246 -96836186 - L1Md_F2 LINE L1 -12 6570 5671 4 1350 988 91 0 0 chr1 100359248 100359391 -96836041 + L1_Mus1 LINE L1 6425 6567 0 4 1350 1748 249 56 85 chr1 100359399 100359975 -96835457 - MurERV4-int LTR ERVK -4675 585 27 4 1350 718 330 124 17 chr1 100360175 100361070 -96834362 - L1M2 LINE L1 -921 5222 4232 4 1350 608 364 56 49 chr1 100361963 100362249 -96833183 - B4 SINE B4 -4 288 1 4 1350 311 82 27 27 chr1 100363684 100363759 -96831673 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 4 1350 34186 74 4 2 chr1 100363763 100369978 -96825454 - L1Md_F2 LINE L1 -10 6572 350 4 1350 1175 291 62 17 chr1 100370225 100370631 -96824801 - BGLII_B LTR ERVK -17 424 1 4 1350 329 349 45 22 chr1 100370866 100371089 -96824343 + L1MEg LINE L1 1687 1914 -4170 4 1350 624 344 20 17 chr1 100371656 100371952 -96823480 - Lx8 LINE L1 -469 7004 6708 4 1350 489 335 93 27 chr1 100371941 100372274 -96823158 - Lx8 LINE L1 -873 6600 6242 4 1350 292 303 13 13 chr1 100372348 100372425 -96823007 - LTR40a LTR ERVL -255 264 188 4 1350 3073 171 110 109 chr1 100372612 100373513 -96821919 - RLTR13D6 LTR ERVK 0 902 1 4 1350 1712 195 39 10 chr1 100373707 100374090 -96821342 + ORR1B1 LTR MaLR 1 394 0 4 1350 22 35 0 0 chr1 100374969 100374998 -96820434 + AT_rich Low_complexity Low_complexity 1 29 0 4 1350 232 276 29 24 chr1 100375075 100375203 -96820229 + A-rich Low_complexity Low_complexity 1 128 0 4 1350 21 57 0 0 chr1 100377426 100377461 -96817971 + AT_rich Low_complexity Low_complexity 1 35 0 4 1350 180 0 0 0 chr1 100377851 100377871 -96817561 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1350 2231 192 42 42 chr1 100377873 100378347 -96817085 - Lx4A LINE L1 -10 7048 6575 4 1350 4083 142 68 6 chr1 100378566 100379297 -96816135 - Lx4A LINE L1 -501 6557 5781 4 1350 322 223 32 11 chr1 100379309 100379404 -96816028 - Lx2A1 LINE L1 -6 7002 6906 4 1350 7121 151 20 132 chr1 100379414 100380126 -96815306 - Lx4A LINE L1 -93 5784 5053 4 1350 1152 154 5 5 chr1 100380126 100380315 -96815117 - B2_Mm2 SINE B2 -5 190 2 4 1350 7121 151 20 132 chr1 100380315 100380564 -96814868 - Lx4A LINE L1 -825 5052 4817 4 1350 1356 58 0 50 chr1 100380564 100380726 -96814706 + B2_Mm1a SINE B2 1 162 -31 4 1350 369 0 0 0 chr1 100380726 100380767 -96814665 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1350 1356 58 0 50 chr1 100380767 100380803 -96814629 + B2_Mm1a SINE B2 163 189 -4 4 1350 7121 151 20 132 chr1 100380803 100381350 -96814082 - Lx4A LINE L1 -1061 4816 4269 4 1350 2113 222 40 31 chr1 100381450 100381988 -96813444 - RLTR31_Mur LTR ERVK 0 553 5 4 1350 386 287 21 0 chr1 100382241 100382335 -96813097 - RLTR18 LTR ERVK -22 594 499 4 1350 486 313 0 0 chr1 100382579 100382710 -96812722 - RLTR18-int LTR ERVK -2424 2937 2807 4 1350 307 336 22 22 chr1 100382718 100382855 -96812577 - RLTR18-int LTR ERVK -2693 2668 2532 4 1350 1320 28 17 0 chr1 100383289 100383466 -96811966 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1350 12222 100 78 17 chr1 100383561 100385033 -96810399 - L1VL4 LINE L1 -515 3044 1461 4 1350 2785 73 3 5 chr1 100385033 100385416 -96810016 - L1Md_F2 LINE L1 0 6582 6201 4 1350 12222 136 47 7 chr1 100385416 100386837 -96808595 - L1VL4 LINE L1 -2099 1460 1 4 1350 215 61 30 0 chr1 100387517 100387550 -96807882 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1350 902 98 61 0 chr1 100387557 100387689 -96807743 - B1_Mus1 SINE Alu -7 141 2 4 1350 459 0 0 0 chr1 100387805 100387856 -96807576 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1350 632 279 31 10 chr1 100387941 100388133 -96807299 - B4 SINE B4 -24 268 73 4 1350 30 45 0 0 chr1 100388407 100388451 -96806981 + AT_rich Low_complexity Low_complexity 1 44 0 4 1350 2098 170 55 9 chr1 100388727 100389148 -96806284 - RMER1A Other Other 0 1030 591 4 1350 498 360 62 9 chr1 100389148 100389375 -96806057 - RMER1A Other Other -686 344 106 4 1350 271 227 28 38 chr1 100389942 100390075 -96805357 - L1MDa LINE L1 -4545 2088 1857 4 1350 26 0 0 0 chr1 100390470 100390496 -96804936 + AT_rich Low_complexity Low_complexity 1 26 0 4 1350 250 372 22 72 chr1 100390765 100390904 -96804528 - MLT1E3 LTR MaLR -257 367 236 4 1350 2387 263 72 11 chr1 100391144 100391813 -96803619 - Lx6 LINE L1 -56 7404 6695 4 1350 269 235 20 0 chr1 100391828 100391879 -96803553 - URR1B DNA MER1_type -168 57 6 4 1350 2039 286 78 12 chr1 100391885 100392479 -96802953 - Lx6 LINE L1 -992 6468 5826 4 1350 273 57 0 0 chr1 100392479 100392514 -96802918 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1350 2039 286 78 12 chr1 100392514 100392610 -96802822 - Lx6 LINE L1 -1635 5825 5733 4 1350 30 69 0 0 chr1 100393064 100393122 -96802310 + AT_rich Low_complexity Low_complexity 1 58 0 4 1350 1457 278 74 28 chr1 100394446 100394949 -96800483 - Lx8 LINE L1 -751 6722 6197 4 1350 561 339 7 26 chr1 100394952 100395255 -96800177 + L1_Rod LINE L1 5539 5835 -12 4 1350 417 39 0 0 chr1 100395783 100395834 -96799598 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1350 231 312 0 0 chr1 100395847 100395895 -96799537 + Tigger7 DNA MER2_type 2443 2490 -1 4 1350 219 36 0 0 chr1 100396223 100396251 -96799181 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1350 1491 236 31 28 chr1 100396811 100397200 -96798232 + ORR1B1 LTR MaLR 3 392 -2 4 1350 4550 234 97 21 chr1 100397200 100398600 -96796832 + ORR1B1-int LTR MaLR 1 1509 0 4 1350 1874 206 24 3 chr1 100398606 100398976 -96796456 + ORR1B1 LTR MaLR 17 394 0 4 1350 234 311 34 0 chr1 100399801 100399920 -96795512 + L1M2 LINE L1 5750 5872 -419 4 1350 2675 79 19 3 chr1 100400058 100400437 -96794995 - L1_Mus3 LINE L1 -7 6631 6247 4 1350 21 0 0 0 chr1 100400665 100400686 -96794746 + AT_rich Low_complexity Low_complexity 1 21 0 4 1350 269 361 62 50 chr1 100400775 100401017 -96794415 - MTE-int LTR MaLR -123 1457 1213 4 1351 2519 59 9 0 chr1 100401359 100401682 -96793750 - L1_Mus1 LINE L1 -298 5585 5260 4 1351 7533 72 0 2 chr1 100401671 100402633 -96792799 + L1_Mus1 LINE L1 5607 6566 -1 4 1351 358 349 65 50 chr1 100402766 100402965 -96792467 - MLT-int LTR MaLR -986 749 548 5 1351 23 33 0 0 chr1 100403641 100403671 -96791761 + AT_rich Low_complexity Low_complexity 1 30 0 5 1351 1557 189 8 90 chr1 100405086 100405197 -96790235 - ORR1A3 LTR MaLR 0 326 247 5 1351 1635 174 10 10 chr1 100405197 100405504 -96789928 - Lx LINE L1 0 6654 6348 5 1351 1557 189 8 90 chr1 100405504 100405747 -96789685 - ORR1A3 LTR MaLR -80 246 1 5 1351 405 341 7 55 chr1 100406004 100406150 -96789282 - RSINE1 SINE B4 -26 139 1 5 1351 6200 196 97 32 chr1 100406250 100407157 -96788275 - Lx2 LINE L1 -685 6312 5362 5 1351 405 0 0 0 chr1 100407157 100407202 -96788230 + (TATG)n Simple_repeat Simple_repeat 2 46 0 5 1351 4509 150 85 9 chr1 100407202 100408014 -96787418 - Lx3A LINE L1 -11 6970 6097 5 1351 6200 182 65 38 chr1 100408014 100408968 -96786464 - Lx2 LINE L1 -522 5361 4366 5 1351 3410 186 3 9 chr1 100408977 100409638 -96785794 + Lx2 LINE L1 6340 6996 -1 5 1351 594 165 8 42 chr1 100409957 100410103 -96785329 - Lx5 LINE L1 -940 5714 5575 5 1351 1523 280 103 30 chr1 100410080 100410828 -96784604 + Lx5 LINE L1 6460 7031 -19 5 1351 29 47 0 0 chr1 100410854 100410897 -96784535 + AT_rich Low_complexity Low_complexity 1 43 0 5 1351 233 356 37 99 chr1 100410920 100411082 -96784350 + B4A SINE B4 11 162 -130 5 1351 711 24 0 0 chr1 100411214 100411299 -96784133 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1351 879 63 0 0 chr1 100411299 100411425 -96784007 + (GA)n Simple_repeat Simple_repeat 2 128 0 5 1351 3232 130 30 2 chr1 100411670 100412178 -96783254 - Lx LINE L1 -4 6650 6129 5 1351 866 286 8 21 chr1 100412462 100412701 -96782731 - Lx7 LINE L1 -694 7002 6767 5 1351 292 169 13 13 chr1 100412707 100412785 -96782647 + CT-rich Low_complexity Low_complexity 3 80 0 5 1351 414 0 0 0 chr1 100414018 100414064 -96781368 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 5 1351 2392 87 3 0 chr1 100414098 100414420 -96781012 - L1_Mus2 LINE L1 0 6566 6244 5 1351 355 367 17 4 chr1 100414584 100414814 -96780618 + RLTR6-int LTR ERV1 583 815 -6741 5 1351 454 125 0 0 chr1 100415578 100415642 -96779790 + RLTR6-int LTR ERV1 1401 1464 -6314 5 1351 7333 196 70 19 chr1 100415652 100417471 -96777961 + Lx6 LINE L1 3560 5461 -419 5 1351 463 211 96 16 chr1 100417455 100417580 -96777852 + Lx6 LINE L1 5615 5749 -1711 5 1351 4178 138 34 61 chr1 100417581 100418429 -96777003 + L1_Mur2 LINE L1 3537 4361 -1516 5 1351 5794 98 7 1 chr1 100418427 100419341 -96776091 - L1_Mus3 LINE L1 -251 6387 5470 5 1351 2315 231 27 25 chr1 100419345 100419995 -96775437 - L1VL4 LINE L1 -5452 1108 332 5 1351 2412 150 83 23 chr1 100420680 100421150 -96774282 - Lx2 LINE L1 0 6997 6500 5 1351 5014 126 65 0 chr1 100421149 100421958 -96773474 + Lx2 LINE L1 5621 6482 -515 5 1351 2388 208 77 18 chr1 100423241 100423935 -96771497 + Lx3C LINE L1 17 1214 -5770 5 1351 434 127 13 53 chr1 100423936 100424011 -96771421 - RMER17A LTR ERVK -483 268 197 5 1351 7307 105 16 29 chr1 100424012 100424253 -96771179 + L1_Mus1 LINE L1 5380 5620 -263 5 1351 6838 59 5 2 chr1 100424253 100425106 -96770326 - RLTR13A LTR ERVK 0 855 1 5 1351 7307 58 34 17 chr1 100425106 100426035 -96769397 + L1_Mus1 LINE L1 5621 6567 0 5 1351 658 85 0 0 chr1 100426061 100426155 -96769277 + Lx3C LINE L1 2149 2242 -3644 5 1351 5415 106 45 0 chr1 100426157 100426948 -96768484 + Lx3_Mus LINE L1 6183 7009 0 5 1351 12440 135 30 10 chr1 100426965 100428952 -96766480 + Lx3C LINE L1 3252 5284 -602 5 1351 189 0 0 0 chr1 100428952 100428973 -96766459 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 5 1351 12440 135 30 10 chr1 100428973 100429140 -96766292 + Lx3C LINE L1 5285 5450 -436 5 1351 1880 210 30 0 chr1 100429137 100429532 -96765900 - Lx3C LINE L1 -502 6474 6068 5 1351 1137 131 5 21 chr1 100429530 100429717 -96765715 + Lx3C LINE L1 5657 5840 -1136 5 1351 2165 154 50 77 chr1 100429712 100430156 -96765276 + Lx2A LINE L1 6575 7006 -2 5 1351 532 152 49 3 chr1 100430155 100430266 -96765166 + Lx2B LINE L1 5827 5952 -630 5 1351 536 80 11 0 chr1 100430306 100430394 -96765038 - L1_Mus3 LINE L1 -5 6633 6545 5 1351 1043 139 6 0 chr1 100430394 100430560 -96764872 - L1_Mus3 LINE L1 -541 6097 5931 5 1351 2523 283 54 61 chr1 100430976 100432143 -96763289 + L1_Rod LINE L1 1959 3123 -2724 5 1351 279 0 0 0 chr1 100432143 100432174 -96763258 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1351 2523 283 54 61 chr1 100432174 100432573 -96762859 + L1_Rod LINE L1 3124 3513 -2334 5 1351 475 281 27 0 chr1 100432579 100432710 -96762722 - B3 SINE B2 -47 148 5 5 1351 599 292 163 58 chr1 100433235 100433806 -96761626 + L1_Mur3 LINE L1 3460 4090 -1790 5 1351 217 167 0 23 chr1 100433818 100433861 -96761571 + T-rich Low_complexity Low_complexity 2 43 0 5 1351 21 0 0 0 chr1 100433883 100433904 -96761528 + AT_rich Low_complexity Low_complexity 1 21 0 5 1351 455 284 80 21 chr1 100433916 100433942 -96761490 + Lx8 LINE L1 4095 4121 -2025 5 1351 1855 44 0 0 chr1 100433942 100434168 -96761264 - L1Md_T LINE L1 0 6582 6357 5 1351 1355 308 96 84 chr1 100434168 100435947 -96759485 + Lx8 LINE L1 4091 5878 -2 5 1351 356 221 0 145 chr1 100435966 100436073 -96759359 - B1_Mur4 SINE Alu -56 93 2 5 1351 947 139 0 12 chr1 100436344 100436511 -96758921 + CT-rich Low_complexity Low_complexity 1 165 0 5 1351 287 212 50 0 chr1 100436512 100436611 -96758821 + (TCTA)n Simple_repeat Simple_repeat 4 107 0 5 1351 320 197 45 0 chr1 100436625 100436691 -96758741 + Lx8 LINE L1 6200 6268 -1205 5 1351 495 60 0 0 chr1 100436731 100436798 -96758634 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1351 1794 228 20 91 chr1 100436811 100437468 -96757964 + L1_Mur3 LINE L1 3757 4366 -1514 5 1351 279 141 0 0 chr1 100437470 100437534 -96757898 + (A)n Simple_repeat Simple_repeat 1 64 0 5 1351 1447 172 16 2 chr1 100437635 100437917 -96757515 - L1VL4 LINE L1 -5491 844 561 5 1351 927 55 8 0 chr1 100437917 100438045 -96757387 - L1Md_F2 LINE L1 -12 6570 6442 5 1351 1141 275 83 82 chr1 100438045 100438533 -96756899 - L1VL4 LINE L1 -5775 560 73 5 1351 12203 44 6 6 chr1 100438665 100440321 -96755111 + MuRRS-int LTR ERV1 384 2079 -2611 5 1351 22 70 0 0 chr1 100440446 100440489 -96754943 + AT_rich Low_complexity Low_complexity 1 43 0 5 1351 540 111 0 0 chr1 100440586 100440667 -96754765 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1351 3118 40 0 0 chr1 100440691 100441065 -96754367 - L1Md_F2 LINE L1 -14 6568 6195 5 1351 3206 147 14 7 chr1 100441068 100441628 -96753804 - L1Md_A LINE L1 -5720 1004 441 5 1351 1032 300 82 14 chr1 100441649 100442004 -96753428 - MTEa LTR MaLR 0 379 1 5 1351 243 310 28 0 chr1 100442008 100442079 -96753353 - B4 SINE B4 -217 75 3 5 1351 396 175 19 19 chr1 100443060 100443165 -96752267 + Lx2 LINE L1 6836 6940 -57 5 1351 944 192 5 21 chr1 100443384 100443575 -96751857 - RLTR22_Mur LTR ERVK -1657 191 4 5 1351 351 44 0 0 chr1 100443673 100443718 -96751714 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1351 1431 50 0 0 chr1 100444575 100444755 -96750677 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1351 593 27 13 0 chr1 100444770 100444845 -96750587 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1351 603 359 124 23 chr1 100444848 100445105 -96750327 - B4 SINE B4 0 292 10 5 1351 492 268 47 8 chr1 100446192 100446320 -96749112 - ETnERV2-int LTR ERVK -204 7202 7070 5 1351 453 281 6 22 chr1 100446335 100446535 -96748897 - L1MA5A LINE L1 -435 5862 5666 5 1351 550 242 15 183 chr1 100446639 100446841 -96748591 + B3A SINE B2 25 195 -3 5 1351 374 333 25 14 chr1 100446841 100447072 -96748360 + L1M2 LINE L1 5361 5593 -596 5 1351 514 295 16 0 chr1 100447141 100447270 -96748162 - ID_B1 SINE B4 0 224 94 5 1351 185 261 22 0 chr1 100447995 100448041 -96747391 - MER5B DNA MER1_type -129 49 3 5 1351 45 19 0 0 chr1 100448340 100448392 -96747040 + AT_rich Low_complexity Low_complexity 1 52 0 5 1351 279 0 0 0 chr1 100448511 100448542 -96746890 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1351 441 0 0 0 chr1 100448542 100448590 -96746842 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1351 521 336 14 14 chr1 100448615 100448890 -96746542 - Lx9 LINE L1 -208 7436 7162 5 1351 1021 208 39 77 chr1 100448894 100449180 -96746252 - RLTR20A2 LTR ERVK -303 275 1 5 1351 306 0 0 0 chr1 100449185 100449219 -96746213 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5 1351 307 317 138 40 chr1 100449244 100449418 -96746014 + MIRc SINE MIR 43 233 -35 5 1351 734 305 67 93 chr1 100449479 100449779 -96745653 - B4A SINE B4 0 292 1 5 1351 727 264 186 45 chr1 100449728 100450096 -96745336 + MTD LTR MaLR 1 390 -29 5 1351 820 322 33 22 chr1 100450350 100450623 -96744809 - B4 SINE B4 -4 288 13 5 1351 23 0 0 0 chr1 100450832 100450855 -96744577 + AT_rich Low_complexity Low_complexity 1 23 0 5 1351 3539 223 45 6 chr1 100451780 100452628 -96742804 - Lx4B LINE L1 -90 6968 6088 5 1351 2098 142 63 6 chr1 100452630 100452978 -96742454 - RLTR9A LTR ERVK 0 368 1 5 1351 258 176 57 34 chr1 100453228 100453316 -96742116 - ETnERV2-int LTR ERVK -981 6425 6336 5 1351 302 244 12 49 chr1 100453474 100453556 -96741876 - ETnERV2-int LTR ERVK -1195 6211 6133 5 1351 9022 145 46 21 chr1 100453550 100454735 -96740697 - RMER16-int LTR ERVK -1331 4075 2861 5 1351 459 0 0 0 chr1 100454735 100454786 -96740646 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1351 9022 198 61 93 chr1 100454786 100457457 -96737975 - RMER16-int LTR ERVK -2648 4596 2077 5 1351 458 17 17 0 chr1 100457516 100457575 -96737857 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 5 1351 1673 78 0 0 chr1 100457811 100458030 -96737402 - L1_Mus2 LINE L1 -1 6565 6347 5 1351 3221 58 2 2 chr1 100458030 100458465 -96736967 + L1_Mus2 LINE L1 5926 6360 -206 5 1351 772 63 276 0 chr1 100458575 100458702 -96736730 - RLTR9A LTR ERVK -206 162 1 5 1351 332 211 67 9 chr1 100458702 100458807 -96736625 - Lx4B LINE L1 -967 6091 5981 5 1351 725 193 0 12 chr1 100458809 100458972 -96736460 - L1_Mur2 LINE L1 -3653 2224 2064 5 1351 378 0 0 0 chr1 100458972 100459014 -96736418 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1351 375 73 0 0 chr1 100459014 100459068 -96736364 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1351 1103 132 37 13 chr1 100459076 100459296 -96736136 - RLTR9F LTR ERVK -7 430 208 5 1351 4869 111 14 0 chr1 100459296 100460036 -96735396 - L1_Mus4 LINE L1 -294 6342 5593 5 1351 1722 178 74 25 chr1 100460027 100460419 -96735013 + L1_Mus4 LINE L1 5180 5590 -293 5 1351 650 266 49 29 chr1 100460482 100460687 -96734745 - MTC-int LTR MaLR -1048 210 2 5 1351 561 253 115 19 chr1 100460752 100460909 -96734523 - MTD LTR MaLR -52 367 196 5 1351 342 0 0 0 chr1 100461114 100461152 -96734280 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1351 2040 206 40 5 chr1 100461223 100461628 -96733804 + MTD LTR MaLR 1 419 0 5 1351 301 296 14 0 chr1 100461630 100461701 -96733731 - MTD LTR MaLR -295 124 53 5 1351 236 225 39 144 chr1 100461701 100461733 -96733699 - MT2A LTR ERVL -440 92 1 5 1351 246 227 0 0 chr1 100461747 100461813 -96733619 + T-rich Low_complexity Low_complexity 1 66 0 6 1351 781 337 19 45 chr1 100461864 100462128 -96733304 - B4 SINE B4 -34 258 2 6 1351 612 291 13 6 chr1 100462507 100462666 -96732766 + B4A SINE B4 10 169 -123 6 1351 1427 49 0 0 chr1 100462934 100463118 -96732314 - L1Md_F2 LINE L1 -5 6577 6394 6 1351 477 0 0 0 chr1 100463935 100463988 -96731444 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1351 275 326 130 12 chr1 100464008 100464240 -96731192 - B4A SINE B4 -16 276 2 6 1351 652 276 67 31 chr1 100464481 100464735 -96730697 + Charlie13b DNA Charlie 124 386 -126 6 1351 2365 68 6 0 chr1 100465117 100465442 -96729990 - L1_Mm LINE L1 -42 5841 5515 6 1351 18259 71 7 14 chr1 100465863 100469188 -96726244 - L1Md_F2 LINE L1 0 6582 3284 6 1351 244 275 75 0 chr1 100469341 100469461 -96725971 + L1MA8 LINE L1 4902 5030 -1110 6 1351 694 314 9 45 chr1 100469764 100469987 -96725445 + B3 SINE B2 1 215 -1 6 1351 40 21 0 0 chr1 100470222 100470269 -96725163 + AT_rich Low_complexity Low_complexity 1 47 0 6 1351 540 294 117 3 chr1 100470332 100470632 -96724800 + L1MA8 LINE L1 5646 5979 -312 6 1351 385 329 97 25 chr1 100470688 100470925 -96724507 + CYRA11_Mm Unknown Y-chromosome 150 403 -214 6 1351 897 206 28 11 chr1 100470745 100470927 -96724505 - URR1B DNA MER1_type -37 188 4 6 1351 393 75 0 0 chr1 100471435 100471488 -96723944 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1351 255 309 74 0 chr1 100471490 100471639 -96723793 + L1MA8 LINE L1 6127 6286 -5 6 1351 28 29 0 0 chr1 100472081 100472116 -96723316 + AT_rich Low_complexity Low_complexity 1 35 0 6 1351 410 347 16 76 chr1 100472531 100472715 -96722717 + B4A SINE B4 2 174 -118 6 1351 1248 48 0 0 chr1 100474787 100474934 -96720498 + B1_Mm SINE Alu 1 147 0 6 1351 308 88 18 0 chr1 100474936 100474993 -96720439 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 6 1351 597 271 67 62 chr1 100475065 100475486 -96719946 + L1M4 LINE L1 3673 4095 -2051 6 1351 570 101 21 28 chr1 100475507 100475650 -96719782 + (CAAAA)n Simple_repeat Simple_repeat 2 143 0 6 1351 257 339 53 9 chr1 100476067 100476180 -96719252 + B3 SINE B2 99 216 0 6 1351 873 54 0 0 chr1 100476429 100476540 -96718892 + (TTTTC)n Simple_repeat Simple_repeat 1 111 0 6 1351 219 114 0 0 chr1 100476542 100476577 -96718855 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 6 1351 356 372 13 7 chr1 100476577 100476731 -96718701 - B4A SINE B4 -46 246 92 6 1351 315 383 12 12 chr1 100476793 100476957 -96718475 - MLT1D-int LTR MaLR -1324 165 2 6 1351 283 336 130 33 chr1 100476960 100477259 -96718173 - MLT1D LTR MaLR -2 503 176 6 1351 524 15 15 0 chr1 100477623 100477688 -96717744 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 1351 16908 33 4 0 chr1 100477714 100479846 -96715586 + L1Md_F2 LINE L1 3447 5586 -297 6 1351 8008 49 2 4 chr1 100479846 100480843 -96714589 + L1Md_F2 LINE L1 5587 6581 -1 6 1351 336 395 41 27 chr1 100480931 100481269 -96714163 + MLT1-int LTR MaLR 149 491 -880 6 1351 326 139 14 0 chr1 100481269 100481341 -96714091 + (TTGG)n Simple_repeat Simple_repeat 2 74 0 6 1351 240 111 0 0 chr1 100481641 100481677 -96713755 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 6 1351 244 105 0 50 chr1 100481792 100481852 -96713580 + A-rich Low_complexity Low_complexity 2 58 0 6 1351 242 321 109 22 chr1 100481894 100482031 -96713401 + MLT1-int LTR MaLR 937 1085 -404 6 1351 279 364 0 9 chr1 100482181 100482292 -96713140 - MIRb SINE MIR -71 197 88 6 1351 399 300 315 19 chr1 100482511 100482839 -96712593 + Lx8 LINE L1 7028 7452 -21 6 1351 23 33 0 0 chr1 100483667 100483697 -96711735 + AT_rich Low_complexity Low_complexity 1 30 0 6 1351 554 328 32 11 chr1 100483865 100484050 -96711382 - ID_B1 SINE B4 -15 209 21 6 1351 827 319 33 44 chr1 100484572 100484844 -96710588 + B4 SINE B4 1 269 -23 6 1351 414 0 0 0 chr1 100484844 100484890 -96710542 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1351 634 291 63 9 chr1 100485265 100485487 -96709945 + B4 SINE B4 11 244 -48 6 1351 645 64 36 18 chr1 100485513 100485624 -96709808 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 6 1351 207 0 0 0 chr1 100485627 100485650 -96709782 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1351 24 0 0 0 chr1 100485738 100485762 -96709670 + AT_rich Low_complexity Low_complexity 1 24 0 6 1351 903 55 0 16 chr1 100485762 100485891 -96709541 - L1_Mus1 LINE L1 0 6567 6441 6 1351 432 211 38 9 chr1 100485945 100486050 -96709382 + RLTR10A LTR ERVK 140 247 -164 6 1351 320 238 86 53 chr1 100486128 100486279 -96709153 + RLTR10-int LTR ERVK 278 433 -1554 6 1351 323 334 42 33 chr1 100486506 100486812 -96708620 + IAP-d-int LTR ERVK 203 511 -6031 6 1351 1990 305 54 52 chr1 100487240 100488772 -96706660 + IAP-d-int LTR ERVK 858 2393 -4149 6 1351 1457 313 56 45 chr1 100488818 100490633 -96704799 + IAP-d-int LTR ERVK 3511 5465 -2116 6 1351 1544 163 13 17 chr1 100490877 100491171 -96704261 + RLTR45-int LTR ERVK 6522 7040 -204 6 1351 538 263 150 17 chr1 100491214 100491454 -96703978 + RLTR10A LTR ERVK 140 411 0 6 1351 528 30 0 15 chr1 100491454 100491522 -96703910 - L1_Mus1 LINE L1 -121 6446 6380 6 1351 582 283 50 45 chr1 100491761 100491961 -96703471 + ID_B1 SINE B4 5 205 -19 6 1351 249 57 0 0 chr1 100491967 100492002 -96703430 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 6 1351 180 77 0 0 chr1 100492002 100492028 -96703404 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 6 1351 493 300 77 0 chr1 100492055 100492185 -96703247 + RSINE1 SINE B4 4 143 -22 6 1351 525 32 0 0 chr1 100492189 100492252 -96703180 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1351 510 262 111 0 chr1 100492399 100492525 -96702907 - RSINE1 SINE B4 -23 142 3 6 1351 367 246 181 47 chr1 100493472 100493621 -96701811 + MTE2a LTR MaLR 5 173 -206 6 1351 387 366 69 16 chr1 100493675 100493864 -96701568 + MT2A LTR ERVL 180 378 -155 6 1351 981 175 6 6 chr1 100494061 100494228 -96701204 + RMER10B LTR ERVL 1 167 -231 6 1351 2257 222 64 54 chr1 100494235 100495016 -96700416 + RLTR19-int LTR ERVK 2545 3333 -2804 6 1351 422 238 55 78 chr1 100495038 100495293 -96700139 + RMER17C-int LTR ERVK 2627 2875 -363 6 1351 1028 262 8 40 chr1 100495574 100495824 -96699608 + RMER10B LTR ERVL 2 243 -155 6 1351 7728 52 0 1 chr1 100495879 100496969 -96698463 - L1Md_F2 LINE L1 -12 6570 5481 6 1351 2731 34 9 3 chr1 100496969 100497294 -96698138 - IAPLTR2b LTR ERVK 0 327 1 6 1351 5887 66 12 18 chr1 100497301 100498130 -96697302 - IAPEz-int LTR ERVK -7 6474 5651 6 1351 10272 61 41 33 chr1 100498123 100499602 -96695830 - IAPEz-int LTR ERVK -4781 1700 211 6 1351 865 60 8 0 chr1 100499602 100499719 -96695713 - IAPEz-int LTR ERVK -6196 285 168 6 1351 226 321 0 0 chr1 100499719 100499772 -96695660 - RLTR27 LTR ERVK -34 275 223 6 1351 924 111 18 137 chr1 100499772 100499991 -96695441 - IAPEz-int LTR ERVK -6286 195 3 6 1351 2503 38 3 3 chr1 100500000 100500313 -96695119 - IAPLTR2b LTR ERVK -14 313 1 1 1351 1017 33 0 0 chr1 100500313 100500434 -96694998 - L1_Mm LINE L1 -397 5486 5366 2 1351 817 239 23 54 chr1 100500434 100500655 -96694777 + RMER10B LTR ERVL 185 398 0 3 1351 253 261 28 28 chr1 100500655 100500724 -96694708 - RSINE1 SINE B4 -54 111 43 4 1351 5196 152 40 20 chr1 100501481 100502480 -96692952 - L1_Mur2 LINE L1 -1207 4670 3652 5 1351 265 396 0 0 chr1 100502909 100503010 -96692422 + B4A SINE B4 186 286 -6 6 1351 438 20 0 0 chr1 100503010 100503061 -96692371 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1351 394 328 26 46 chr1 100504012 100504207 -96691225 - B3A SINE B2 -6 192 2 8 1351 800 284 29 0 chr1 100504609 100504817 -96690615 + ID_B1 SINE B4 4 217 -7 9 1351 1371 208 162 6 chr1 100504839 100505173 -96690259 + ORR1B1 LTR MaLR 5 390 -4 1 1351 588 138 37 19 chr1 100506101 100506263 -96689169 + (TCTA)n Simple_repeat Simple_repeat 4 168 0 1 1351 522 0 0 0 chr1 100506395 100506453 -96688979 + (GGATG)n Simple_repeat Simple_repeat 5 62 0 1 1351 21 36 0 0 chr1 100506993 100507021 -96688411 + AT_rich Low_complexity Low_complexity 1 28 0 1 1351 658 335 47 47 chr1 100507440 100507675 -96687757 - B4 SINE B4 -12 280 46 1 1351 239 72 0 23 chr1 100508629 100508672 -96686760 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1351 530 317 77 41 chr1 100508691 100508855 -96686577 - B4 SINE B4 -91 201 25 1 1351 2411 142 48 38 chr1 100508855 100509332 -96686100 - RLTR45 LTR ERVK 0 482 1 1 1351 530 317 77 41 chr1 100509332 100509361 -96686071 - B4 SINE B4 -268 24 1 1 1351 225 279 44 0 chr1 100509816 100509884 -96685548 + RLTR13B4 LTR ERVK 17 87 -716 1 1351 6678 12 0 0 chr1 100510186 100510938 -96684494 + L1Md_T LINE L1 5831 6582 0 1 1351 247 291 74 46 chr1 100510940 100511048 -96684384 - MTD LTR MaLR -299 120 10 2 1351 40512 16 1 6 chr1 100511180 100517566 -96677866 - L1Md_A LINE L1 0 6582 230 2 1351 907 132 54 6 chr1 100517580 100517748 -96677684 - Lx3_Mus LINE L1 -8 7001 6826 2 1351 2842 70 2 37 chr1 100518779 100519181 -96676251 - L1_Mus1 LINE L1 -2 6565 6178 2 1351 389 238 6 0 chr1 100519971 100520069 -96675363 + (TG)n Simple_repeat Simple_repeat 1 99 0 2 1351 333 0 0 0 chr1 100520069 100520106 -96675326 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1351 389 238 6 0 chr1 100520106 100520179 -96675253 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1351 356 365 57 82 chr1 100520227 100520421 -96675011 - B4 SINE B4 0 292 104 2 1351 402 278 53 40 chr1 100520399 100520549 -96674883 - ORR1C2 LTR MaLR -15 359 208 2 1351 350 299 0 8 chr1 100520597 100520725 -96674707 + GA-rich Low_complexity Low_complexity 2 128 0 2 1351 777 315 24 15 chr1 100520725 100521004 -96674428 - ORR1D1 LTR MaLR -86 284 1 3 1351 532 272 49 45 chr1 100521673 100521896 -96673536 - Lx8 LINE L1 -645 6828 6605 3 1351 1063 90 0 20 chr1 100521993 100522141 -96673291 + B1_Mus1 SINE Alu 2 146 -2 3 1351 296 278 14 0 chr1 100522327 100522399 -96673033 - RMER30 DNA MER1_type -121 81 9 3 1351 552 15 0 0 chr1 100522448 100522513 -96672919 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1351 798 344 74 8 chr1 100522749 100523139 -96672293 - Lx8 LINE L1 -180 7293 6878 3 1351 438 301 22 8 chr1 100523656 100523790 -96671642 - MTE2a LTR MaLR -37 342 207 3 1351 4578 112 7 1 chr1 100523793 100524473 -96670959 + L1_Mus3 LINE L1 5942 6625 -13 3 1351 3432 47 0 5 chr1 100524472 100524901 -96670531 + L1Md_F2 LINE L1 6143 6569 -13 3 1351 1028 312 68 32 chr1 100524973 100525440 -96669992 - RMER5 LTR ERV1 -18 516 33 3 1351 597 360 32 0 chr1 100526386 100526575 -96668857 + B4A SINE B4 92 286 -6 4 1351 203 319 21 11 chr1 100526592 100526687 -96668745 + (CATA)n Simple_repeat Simple_repeat 3 98 0 4 1351 731 357 71 76 chr1 100527118 100527670 -96667762 - MER74A LTR ERVL -9 549 1 4 1351 1055 233 180 33 chr1 100528884 100529217 -96666215 - ORR1C2 LTR MaLR -2 382 1 4 1351 269 26 26 0 chr1 100529584 100529622 -96665810 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1351 511 341 75 19 chr1 100529908 100530174 -96665258 - B4A SINE B4 -10 282 2 4 1351 807 11 0 0 chr1 100530279 100530371 -96665061 + (GAA)n Simple_repeat Simple_repeat 2 93 0 4 1351 1057 82 0 70 chr1 100530404 100530562 -96664870 + B1_Mm SINE Alu 1 147 0 4 1351 503 359 46 25 chr1 100531488 100531771 -96663661 - B4 SINE B4 0 292 4 4 1351 237 239 28 14 chr1 100532042 100532114 -96663318 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1352 516 32 0 0 chr1 100532274 100532336 -96663096 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1352 186 73 48 24 chr1 100533037 100533079 -96662353 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1352 313 364 22 10 chr1 100533240 100533379 -96662053 + B4A SINE B4 16 148 -76 5 1352 372 43 0 0 chr1 100533527 100533573 -96661859 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1352 387 0 0 0 chr1 100533829 100533872 -96661560 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1352 1721 73 32 8 chr1 100533888 100534137 -96661295 - L1Md_F2 LINE L1 -19 6563 6309 5 1352 23 54 0 0 chr1 100534575 100534612 -96660820 + AT_rich Low_complexity Low_complexity 1 37 0 5 1352 709 314 72 36 chr1 100534618 100534896 -96660536 + B4A SINE B4 1 288 -4 5 1352 252 170 0 0 chr1 100534967 100535020 -96660412 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 1352 428 252 44 59 chr1 100535366 100535501 -96659931 + MLT2B2 LTR ERVL 41 173 -342 5 1352 915 85 11 33 chr1 100535508 100535691 -96659741 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 6 1352 725 307 78 4 chr1 100535815 100536060 -96659372 + Lx8 LINE L1 6850 7112 -361 6 1352 303 293 0 0 chr1 100536356 100536431 -96659001 + Lx8 LINE L1 6576 6650 -823 6 1352 473 335 38 27 chr1 100536519 100536703 -96658729 + MLT2B2 LTR ERVL 377 562 0 5 1352 514 366 101 21 chr1 100537821 100538159 -96657273 + MLT1A LTR MaLR 6 370 -4 6 1352 185 132 0 26 chr1 100538622 100538661 -96656771 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1352 3424 23 5 0 chr1 100538752 100539146 -96656286 + MTA_Mm LTR MaLR 1 396 0 6 1352 9603 16 0 0 chr1 100539146 100540244 -96655188 + MTA_Mm-int LTR MaLR 1 1098 0 6 1352 3456 18 5 0 chr1 100540244 100540638 -96654794 + MTA_Mm LTR MaLR 1 396 0 6 1352 231 286 13 0 chr1 100541011 100541088 -96654344 + MLT2B2 LTR ERVL 479 556 -6 6 1352 253 290 15 68 chr1 100541178 100541311 -96654121 + RMER15 LTR ERVL 3 128 -447 6 1352 40918 10 0 6 chr1 100541566 100547969 -96647463 - L1Md_A LINE L1 0 6582 223 6 1352 180 214 24 0 chr1 100548154 100548196 -96647236 - L2a LINE L2 -8 3418 3376 6 1352 506 265 22 22 chr1 100548644 100548779 -96646653 - B1F SINE Alu 0 149 15 7 1352 792 55 0 0 chr1 100549110 100549220 -96646212 + (CAAAC)n Simple_repeat Simple_repeat 5 114 0 7 1352 6136 127 57 39 chr1 100549479 100550575 -96644857 + Lx3C LINE L1 5847 6961 -15 7 1352 180 0 0 0 chr1 100550575 100550595 -96644837 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 7 1352 25 31 0 0 chr1 100550695 100550727 -96644705 + AT_rich Low_complexity Low_complexity 1 32 0 7 1352 21 0 0 0 chr1 100551962 100551983 -96643449 + AT_rich Low_complexity Low_complexity 1 21 0 7 1352 270 306 0 20 chr1 100551988 100552088 -96643344 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 7 1352 677 275 66 71 chr1 100552137 100552333 -96643099 - B3A SINE B2 0 195 1 7 1352 387 324 50 14 chr1 100552333 100552473 -96642959 - B4 SINE B4 -65 227 83 7 1352 369 219 35 9 chr1 100552491 100552606 -96642826 - Lx9 LINE L1 -7 7637 7520 7 1352 306 0 0 0 chr1 100552608 100552642 -96642790 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1352 2537 237 79 22 chr1 100552654 100552811 -96642621 - Lx9 LINE L1 -284 7360 7190 7 1352 658 99 9 9 chr1 100552811 100552923 -96642509 - L1_Mus1 LINE L1 0 6567 6456 8 1352 2537 237 79 22 chr1 100552923 100553471 -96641961 - Lx9 LINE L1 -455 7189 6613 7 1352 2946 72 24 9 chr1 100553471 100553894 -96641538 + L1_Mus3 LINE L1 6204 6632 -6 8 1352 2537 237 79 22 chr1 100553894 100553908 -96641524 - Lx9 LINE L1 -1032 6612 6599 7 1352 218 214 27 75 chr1 100554000 100554187 -96641245 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 8 1352 201 74 0 0 chr1 100554271 100554298 -96641134 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1352 1333 256 32 6 chr1 100554300 100554611 -96640821 - Lx9 LINE L1 -1020 6624 6306 7 1352 648 272 169 16 chr1 100554726 100555022 -96640410 - Lx9 LINE L1 -1596 6048 5729 7 1352 360 137 0 0 chr1 100555011 100555062 -96640370 + L1_Rod LINE L1 5609 5659 -188 8 1352 592 304 112 24 chr1 100555360 100555700 -96639732 + ORR1D2 LTR MaLR 1 370 0 8 1352 240 289 63 63 chr1 100556221 100556332 -96639100 + MLT1-int LTR MaLR 979 1089 -282 8 1352 290 394 37 12 chr1 100556540 100556702 -96638730 + MIRb SINE MIR 4 169 -99 8 1352 441 121 0 0 chr1 100556887 100556970 -96638462 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1352 239 239 0 0 chr1 100557262 100557329 -96638103 + (TA)n Simple_repeat Simple_repeat 2 68 0 9 1352 387 41 0 0 chr1 100557330 100557379 -96638053 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1352 22 0 0 0 chr1 100557459 100557481 -96637951 + AT_rich Low_complexity Low_complexity 1 22 0 9 1352 368 274 30 73 chr1 100557515 100557680 -96637752 - RSINE1 SINE B4 0 165 8 9 1352 632 284 31 10 chr1 100558288 100558319 -96637113 - B3A SINE B2 -1 197 167 9 1352 204 40 0 0 chr1 100558319 100558344 -96637088 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1352 632 284 31 10 chr1 100558344 100558504 -96636928 - B3A SINE B2 -32 166 2 9 1352 21 0 0 0 chr1 100558987 100559008 -96636424 + AT_rich Low_complexity Low_complexity 1 21 0 9 1352 22 0 0 0 chr1 100559259 100559281 -96636151 + AT_rich Low_complexity Low_complexity 1 22 0 9 1352 180 77 0 0 chr1 100559406 100559432 -96636000 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9 1352 332 335 98 0 chr1 100559507 100559671 -96635761 - Lx8 LINE L1 -283 7190 7011 9 1352 186 71 0 0 chr1 100559671 100559699 -96635733 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1352 929 162 0 0 chr1 100559699 100559847 -96635585 - B1_Mus1 SINE Alu 0 148 1 1 1352 736 309 40 18 chr1 100559849 100560126 -96635306 - Lx8 LINE L1 -450 7023 6741 9 1352 24 32 0 0 chr1 100560175 100560206 -96635226 + AT_rich Low_complexity Low_complexity 1 31 0 1 1352 400 352 14 45 chr1 100560554 100560777 -96634655 + ID_B1 SINE B4 4 219 -5 1 1352 3114 8 3 0 chr1 100561065 100561419 -96634013 + L1Md_A LINE L1 6227 6581 -1 1 1352 201 196 0 0 chr1 100561537 100561583 -96633849 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1352 1562 214 54 26 chr1 100561682 100561951 -96633481 - ORR1B2 LTR MaLR -2 365 82 1 1352 2195 216 32 92 chr1 100561951 100562600 -96632832 - RMER19C LTR ERVK 0 611 2 1 1352 1562 214 54 26 chr1 100562600 100562681 -96632751 - ORR1B2 LTR MaLR -286 81 5 1 1352 482 180 0 7 chr1 100562733 100562873 -96632559 + GA-rich Low_complexity Low_complexity 1 139 0 1 1352 1074 311 51 33 chr1 100562976 100563371 -96632061 + MTD LTR MaLR 18 419 0 1 1352 1053 85 28 0 chr1 100563602 100563743 -96631689 + B1_Mus2 SINE Alu 3 147 0 1 1352 939 115 0 0 chr1 100563751 100563899 -96631533 + (TA)n Simple_repeat Simple_repeat 2 149 0 1 1352 3350 157 25 48 chr1 100563923 100564614 -96630818 + RLTR13D6 LTR ERVK 228 902 0 1 1352 189 0 0 0 chr1 100565145 100565166 -96630266 + (TCTCTG)n Simple_repeat Simple_repeat 2 22 0 1 1352 1024 195 44 20 chr1 100565186 100565437 -96629995 - RMER17C LTR ERVK -153 257 1 1 1352 1110 82 0 14 chr1 100565492 100565640 -96629792 - B1_Mus2 SINE Alu 0 147 2 1 1352 2027 164 88 15 chr1 100565643 100566039 -96629393 - RMER17C-int LTR ERVK -8 3230 2806 1 1352 503 353 32 5 chr1 100566045 100566230 -96629202 + Lx8 LINE L1 7139 7328 -145 1 1352 312 48 0 0 chr1 100566237 100566279 -96629153 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1352 413 289 62 15 chr1 100566294 100566410 -96629022 + B1_Mur1 SINE Alu 14 137 -12 1 1352 450 0 0 0 chr1 100566410 100566460 -96628972 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1352 413 289 62 15 chr1 100566460 100566473 -96628959 + B1_Mur1 SINE Alu 138 149 0 1 1352 187 274 13 52 chr1 100566926 100567003 -96628429 + MIR SINE MIR 189 262 0 1 1352 580 324 22 68 chr1 100567080 100567302 -96628130 - B4A SINE B4 -23 269 58 1 1352 1279 261 26 72 chr1 100567502 100567919 -96627513 + MTD LTR MaLR 13 410 -9 1 1352 9513 176 22 9 chr1 100568137 100569876 -96625556 - MERVK26-int LTR ERVK -1901 5018 3258 1 1352 2728 203 30 84 chr1 100569874 100570189 -96625243 - MERVK26-int LTR ERVK -5717 1202 886 1 1352 268 13 0 0 chr1 100570189 100570232 -96625200 + L1_Mus2 LINE L1 6528 6562 -4 1 1352 2728 203 30 84 chr1 100570232 100570553 -96624879 - MERVK26-int LTR ERVK -5717 885 561 1 1352 645 289 58 0 chr1 100570555 100570728 -96624704 + B4A SINE B4 104 286 -6 1 1352 432 0 0 0 chr1 100570733 100570781 -96624651 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1352 9269 243 55 32 chr1 100572166 100575853 -96619579 + Lx6 LINE L1 3157 7283 -177 1 1352 287 57 0 0 chr1 100575853 100575888 -96619544 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 1 1352 946 143 8 8 chr1 100575888 100576248 -96619184 + CT-rich Low_complexity Low_complexity 1 360 0 1 1352 2148 146 94 16 chr1 100576265 100576649 -96618783 - Lx3B LINE L1 -6 6967 6554 1 1352 591 295 71 100 chr1 100576665 100576974 -96618458 - Lx6 LINE L1 -45 7415 7116 1 1352 259 213 66 0 chr1 100577103 100577164 -96618268 + B3 SINE B2 77 141 -75 1 1352 884 294 67 8 chr1 100577198 100577465 -96617967 + B4A SINE B4 8 290 -2 1 1352 459 351 68 40 chr1 100577755 100578076 -96617356 + RMER15 LTR ERVL 246 575 0 1 1352 231 146 0 0 chr1 100578341 100578382 -96617050 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1352 628 276 68 123 chr1 100578560 100578779 -96616653 + ID_B1 SINE B4 17 223 -1 1 1352 252 0 0 0 chr1 100578902 100578930 -96616502 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1352 811 268 55 21 chr1 100578979 100579215 -96616217 - MTEb LTR MaLR -2 377 134 1 1352 1647 97 39 4 chr1 100579418 100579676 -96615756 - L1_Mus3 LINE L1 -1 6637 6371 1 1352 3739 141 49 0 chr1 100579676 100580287 -96615145 + L1_Mm LINE L1 5189 5829 -54 1 1352 534 345 24 29 chr1 100580305 100580514 -96614918 - B3 SINE B2 -6 210 3 1 1352 1043 276 66 28 chr1 100581246 100581614 -96613818 - MTD LTR MaLR 0 421 24 1 1352 639 313 12 6 chr1 100581954 100582121 -96613311 - B4A SINE B4 -48 244 77 1 1352 2572 236 54 10 chr1 100582128 100582723 -96612709 - RMER20B LTR ERVK -3 624 4 1 1352 353 58 19 0 chr1 100582853 100582905 -96612527 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1352 447 87 0 0 chr1 100582918 100582987 -96612445 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1352 361 389 37 75 chr1 100583989 100584203 -96611229 - B4 SINE B4 0 292 87 1 1352 244 354 0 24 chr1 100584231 100584315 -96611117 - BC1_Mm scRNA scRNA -62 90 9 1 1352 2874 223 30 13 chr1 100584345 100585104 -96610328 + L1_Mur2 LINE L1 4502 5273 -604 1 1352 522 211 0 0 chr1 100585126 100585240 -96610192 - L1_Mur2 LINE L1 -1367 4510 4397 1 1352 3566 196 25 21 chr1 100585225 100585581 -96609851 - L1_Mur2 LINE L1 -2769 3108 2744 1 1352 2831 83 19 10 chr1 100585581 100585995 -96609437 - BGLII LTR ERVK 0 421 4 1 1352 3566 196 25 21 chr1 100585995 100586464 -96608968 - L1_Mur2 LINE L1 -3134 2743 2279 1 1352 4308 83 8 7 chr1 100586464 100587055 -96608377 - L1Md_F2 LINE L1 -12 6570 5979 1 1352 2905 206 55 15 chr1 100587055 100587876 -96607556 - L1_Mur2 LINE L1 -3940 1937 1043 1 1352 2004 202 5 65 chr1 100588448 100588866 -96606566 + RMER13B LTR ERVK 3 395 -513 1 1352 361 111 67 0 chr1 100588887 100588977 -96606455 + L1_Mus4 LINE L1 6537 6632 -4 1 1352 1347 240 155 43 chr1 100588977 100589074 -96606358 + RMER13B LTR ERVK 384 480 -428 1 1352 3079 32 73 0 chr1 100589074 100589443 -96605989 + MTA_Mm LTR MaLR 1 396 0 1 1352 1347 240 155 43 chr1 100589443 100589815 -96605617 + RMER13B LTR ERVK 481 906 -2 1 1352 228 100 0 0 chr1 100590026 100590066 -96605366 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1352 438 148 0 0 chr1 100590074 100590175 -96605257 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 1 1352 2382 77 12 3 chr1 100590422 100590746 -96604686 - L1_Mus1 LINE L1 0 6567 6241 1 1352 581 289 36 12 chr1 100590864 100591032 -96604400 - MTE2b LTR MaLR -13 366 195 1 1352 357 173 0 0 chr1 100591032 100591156 -96604276 + GA-rich Low_complexity Low_complexity 1 124 0 1 1352 680 277 37 46 chr1 100591156 100591372 -96604060 - MTE2b LTR MaLR -163 216 3 1 1352 402 85 0 0 chr1 100592114 100592173 -96603259 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1352 506 383 6 6 chr1 100592598 100592761 -96602671 + RSINE1 SINE B4 1 163 -2 1 1352 1419 254 66 2 chr1 100592891 100593286 -96602146 - MTC LTR MaLR -1 420 1 1 1352 1802 225 108 25 chr1 100593715 100594243 -96601189 + RMER15 LTR ERVL 1 572 -3 1 1352 270 0 0 0 chr1 100594310 100594340 -96601092 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1352 875 89 7 0 chr1 100594815 100594950 -96600482 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 1352 661 339 88 4 chr1 100594958 100595192 -96600240 - B4 SINE B4 -4 288 35 1 1352 564 292 65 6 chr1 100595192 100595361 -96600071 + MTD LTR MaLR 1 179 -240 1 1352 578 187 0 45 chr1 100595356 100595468 -96599964 - MTC LTR MaLR -314 107 1 1 1352 271 253 92 13 chr1 100595520 100595596 -96599836 - B4 SINE B4 -14 278 197 1 1352 396 0 0 0 chr1 100595609 100595653 -96599779 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1352 312 70 0 0 chr1 100595913 100595956 -96599476 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1352 302 318 73 36 chr1 100595993 100596130 -96599302 - B1_Mus2 SINE Alu -3 144 3 1 1352 279 151 0 0 chr1 100596342 100596395 -96599037 - L1_Mur3 LINE L1 -2420 3460 3408 1 1352 2479 108 8 18 chr1 100596392 100596777 -96598655 - L1_Mus3 LINE L1 -563 6075 5695 1 1352 3914 91 5 4 chr1 100596777 100597329 -96598103 + L1_Mus3 LINE L1 6079 6631 -7 1 1352 781 252 18 5 chr1 100597329 100597364 -96598068 - L1_Mur3 LINE L1 -191 5689 5651 1 1352 363 190 0 12 chr1 100597337 100597422 -96598010 - L1_Mur3 LINE L1 -2459 3421 3338 1 1352 337 206 144 0 chr1 100597435 100597532 -96597900 - L1_Mur3 LINE L1 -1473 4407 4297 1 1352 480 163 69 15 chr1 100597618 100597749 -96597683 - L1_Mur3 LINE L1 -459 5421 5284 1 1352 4992 128 3 7 chr1 100597765 100598537 -96596895 - Lx3_Mus LINE L1 -8 7001 6233 1 1352 5588 187 47 8 chr1 100598537 100599728 -96595704 + L1_Mur2 LINE L1 4555 5791 -86 1 1352 676 298 134 6 chr1 100599733 100600018 -96595414 + Lx3C LINE L1 6674 6998 -2 1 1352 345 350 28 28 chr1 100600177 100600359 -96595073 + L1M5 LINE L1 4085 4266 -1880 1 1352 241 264 58 117 chr1 100600406 100600543 -96594889 + B3A SINE B2 69 197 -1 1 1352 348 272 68 34 chr1 100600677 100600795 -96594637 + PB1 SINE Alu 4 125 -2 1 1352 368 254 109 0 chr1 100601177 100601287 -96594145 - RMER15 LTR ERVL -1 574 453 1 1352 270 0 0 0 chr1 100601322 100601352 -96594080 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1352 232 250 49 16 chr1 100601937 100601998 -96593434 - ORR1E LTR MaLR -5 354 292 1 1352 435 267 20 0 chr1 100602173 100602274 -96593158 + B4A SINE B4 143 245 -47 1 1352 1117 75 7 0 chr1 100602296 100602442 -96592990 - B1_Mm SINE Alu 0 147 1 1 1352 270 0 0 0 chr1 100602442 100602472 -96592960 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1352 459 0 0 0 chr1 100602573 100602624 -96592808 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1352 1139 48 0 40 chr1 100603294 100603446 -96591986 - B1_Mm SINE Alu -1 146 1 1 1352 872 321 57 19 chr1 100603697 100604068 -96591364 + RMER5 LTR ERV1 36 420 -114 1 1352 1100 257 114 12 chr1 100604263 100604604 -96590828 + ORR1D1 LTR MaLR 4 369 -5 1 1352 305 263 10 31 chr1 100604609 100604707 -96590725 + RMER5 LTR ERV1 428 523 -11 1 1352 495 0 0 0 chr1 100605255 100605310 -96590122 + (TTTCC)n Simple_repeat Simple_repeat 3 57 0 1 1352 1742 218 84 8 chr1 100605467 100605846 -96589586 + MTC LTR MaLR 1 408 -13 1 1352 255 31 0 0 chr1 100605966 100605998 -96589434 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1352 6110 130 34 14 chr1 100606262 100607302 -96588130 + Lx3_Mus LINE L1 5946 7005 -4 1 1352 4779 33 5 7 chr1 100607345 100607931 -96587501 - L1Md_F3 LINE L1 -2 6582 5998 1 1352 1173 229 71 11 chr1 100607990 100608273 -96587159 + ORR1B1 LTR MaLR 95 394 0 2 1352 239 357 42 79 chr1 100608469 100608685 -96586747 - MLT1E2 LTR MaLR -81 546 339 2 1352 231 114 0 0 chr1 100609268 100609312 -96586120 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1352 540 0 0 0 chr1 100609312 100609371 -96586061 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1352 290 298 62 21 chr1 100609376 100609472 -96585960 - B4 SINE B4 -18 274 175 2 1352 216 78 58 19 chr1 100609473 100609525 -96585907 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1352 297 0 0 0 chr1 100611758 100611791 -96583641 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1352 7071 102 9 11 chr1 100611791 100612827 -96582605 - L1_Mus3 LINE L1 -15 6623 5590 2 1352 7631 168 56 24 chr1 100612826 100613557 -96581875 + L1_Mm LINE L1 3559 4292 -1591 2 1352 180 0 0 0 chr1 100613557 100613577 -96581855 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1352 7631 168 56 24 chr1 100613577 100614488 -96580944 + L1_Mm LINE L1 4293 5253 -630 2 1352 514 276 47 16 chr1 100614876 100615005 -96580427 - ETnERV2-int LTR ERVK -204 7202 7070 2 1352 2073 137 6 18 chr1 100615005 100615347 -96580085 + L1_Mm LINE L1 5248 5585 -298 2 1352 3539 15 0 0 chr1 100621401 100621797 -96573635 - MTA_Mm LTR MaLR 0 396 1 2 1352 1416 222 65 40 chr1 100623895 100624266 -96571166 + RLTR14 LTR ERV1 3 382 0 2 1352 293 68 23 0 chr1 100624759 100624803 -96570629 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1352 2212 229 27 6 chr1 100624863 100625389 -96570043 + MERVL_2A-int LTR ERVL 13 549 -5212 2 1352 4124 143 25 21 chr1 100625390 100626121 -96569311 + Lx2B LINE L1 5587 6294 -706 2 1352 876 298 21 29 chr1 100626445 100626725 -96568707 - RLTR16 LTR ERVK -206 299 22 2 1352 3615 147 88 22 chr1 100626725 100627394 -96568038 + Lx2B LINE L1 6285 6997 -3 2 1352 1408 238 22 36 chr1 100627403 100627760 -96567672 + MERVL_2A-int LTR ERVL 563 914 -4847 2 1352 203 22 40 80 chr1 100630734 100630784 -96564648 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1352 1053 148 33 210 chr1 100630784 100631084 -96564348 + RLTR23 LTR ERV1 184 430 0 2 1352 1920 226 27 19 chr1 100632753 100633163 -96562269 - MTC LTR MaLR -8 413 1 2 1352 764 161 25 6 chr1 100633165 100633327 -96562105 - MTC-int LTR MaLR -2 1256 1092 2 1352 1138 124 38 0 chr1 100633343 100633529 -96561903 - B2_Mm2 SINE B2 -2 193 1 2 1352 330 338 37 60 chr1 100634257 100634474 -96560958 - B3 SINE B2 -4 212 1 2 1352 1332 281 37 33 chr1 100634488 100634891 -96560541 - MTD LTR MaLR -12 407 18 2 1352 2246 114 6 0 chr1 100636091 100636416 -96559016 - ORR1A2 LTR MaLR 0 327 1 2 1352 226 196 57 29 chr1 100636829 100636934 -96558498 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 2 1352 1067 297 95 3 chr1 100638711 100639049 -96556383 - MTEa LTR MaLR -5 374 6 2 1352 231 36 0 0 chr1 100639087 100639115 -96556317 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 1352 339 329 140 57 chr1 100639336 100639671 -96555761 + MTE2a LTR MaLR 8 370 -9 2 1352 323 60 0 20 chr1 100639899 100639950 -96555482 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 2 1352 22 0 0 0 chr1 100640128 100640150 -96555282 + AT_rich Low_complexity Low_complexity 1 22 0 2 1352 7024 50 2 12 chr1 100640271 100640574 -96554858 - L1Md_F2 LINE L1 0 6582 6288 2 1352 2664 55 3 47 chr1 100640574 100640935 -96554497 + IAPLTR4 LTR ERVK 1 345 0 2 1352 7024 50 2 12 chr1 100640935 100641532 -96553900 - L1Md_F2 LINE L1 -295 6287 5691 2 1352 26 0 0 0 chr1 100641566 100641592 -96553840 + AT_rich Low_complexity Low_complexity 1 26 0 2 1352 260 275 24 24 chr1 100641735 100641817 -96553615 - B4 SINE B4 -198 94 13 2 1352 333 0 0 0 chr1 100641999 100642036 -96553396 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1352 662 304 6 6 chr1 100642043 100642205 -96553227 - RSINE1 SINE B4 0 165 4 2 1352 297 145 52 41 chr1 100643975 100644147 -96551285 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 2 1352 329 316 110 40 chr1 100644413 100644640 -96550792 + MIR SINE MIR 5 247 -15 2 1352 1099 315 72 0 chr1 100644975 100645321 -96550111 - MTEa LTR MaLR -8 371 1 2 1352 375 376 73 73 chr1 100645959 100646246 -96549186 - B4 SINE B4 0 292 6 2 1352 987 308 48 21 chr1 100646798 100647148 -96548284 + ORR1E LTR MaLR 3 416 -3 2 1352 491 326 66 60 chr1 100647204 100647537 -96547895 - MTE2a LTR MaLR -2 377 43 2 1352 1125 247 52 3 chr1 100648281 100648606 -96546826 + Lx2B LINE L1 833 1173 -5811 2 1352 720 169 13 7 chr1 100648614 100648769 -96546663 + T-rich Low_complexity Low_complexity 5 160 0 2 1352 501 224 20 27 chr1 100648798 100648872 -96546560 - Lx3A LINE L1 -6 6975 6901 2 1352 279 0 0 0 chr1 100648872 100648903 -96546529 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1352 501 224 20 27 chr1 100648903 100648975 -96546457 - Lx3A LINE L1 -81 6900 6831 2 1352 591 250 0 6 chr1 100648999 100649156 -96546276 + Lx2B LINE L1 1159 1314 -5670 2 1352 12113 180 100 53 chr1 100649160 100650629 -96544803 + Lx2B LINE L1 2772 4147 -1739 2 1352 1440 164 108 24 chr1 100650629 100650916 -96544516 - RLTR10E LTR ERVK 0 311 1 2 1352 12113 208 83 52 chr1 100650916 100653528 -96541904 + Lx2B LINE L1 4148 7000 0 2 1352 270 0 0 0 chr1 100654171 100654201 -96541231 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1352 471 326 124 17 chr1 100655782 100656016 -96539416 - B4A SINE B4 -29 263 5 2 1352 200 279 0 0 chr1 100656373 100656416 -96539016 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1352 5175 132 14 13 chr1 100656786 100657633 -96537799 + Lx2 LINE L1 6147 6994 -3 2 1352 378 310 110 9 chr1 100658851 100659079 -96536353 + MER58B DNA MER1_type 73 323 -18 2 1352 21 0 0 0 chr1 100659149 100659170 -96536262 + AT_rich Low_complexity Low_complexity 1 21 0 2 1352 717 172 0 38 chr1 100659213 100659346 -96536086 - B2_Mm2 SINE B2 -67 128 1 2 1352 661 263 82 46 chr1 100659358 100659577 -96535855 - ORR1D1 LTR MaLR 0 374 148 2 1352 342 0 0 0 chr1 100659578 100659616 -96535816 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1352 615 290 35 0 chr1 100659695 100659864 -96535568 - ORR1D1 LTR MaLR -199 175 1 2 1352 602 310 43 19 chr1 100659866 100660073 -96535359 + MTEa LTR MaLR 6 217 -162 2 1352 198 0 0 0 chr1 100660116 100660138 -96535294 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1352 1233 270 89 81 chr1 100660165 100660828 -96534604 + MTC-int LTR MaLR 410 1173 -85 2 1352 1170 74 0 0 chr1 100660828 100660976 -96534456 + B1_Mus1 SINE Alu 1 148 0 2 1352 244 132 13 38 chr1 100660976 100661055 -96534377 + A-rich Low_complexity Low_complexity 3 79 0 2 1352 802 306 9 5 chr1 100661122 100661332 -96534100 + MTD LTR MaLR 1 211 -208 2 1352 627 285 65 5 chr1 100662238 100662439 -96532993 + MTD LTR MaLR 202 414 -5 2 1352 4306 20 0 12 chr1 100662754 100663253 -96532179 + MT2_Mm LTR ERVL 1 493 0 2 2 42664 14 0 0 chr1 100663253 100668612 -96526820 + MERVL-int LTR ERVL 1 5360 -125 2 1353 392 167 46 35 chr1 100668612 100668699 -96526733 + ORR1A3-int LTR MaLR 553 640 -1323 2 1353 314 0 0 0 chr1 100668699 100668737 -96526695 + MERVL-int LTR ERVL 5448 5485 0 2 1353 4306 20 0 12 chr1 100668737 100669236 -96526196 + MT2_Mm LTR ERVL 1 493 0 2 1353 15087 164 41 7 chr1 100669356 100673387 -96522045 - Lx4A LINE L1 -2 7056 2871 2 1353 8441 166 53 13 chr1 100674627 100676899 -96518533 - Lx4A LINE L1 -2990 2887 514 2 1353 522 46 0 0 chr1 100676972 100677037 -96518395 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2 1353 21 82 0 0 chr1 100677204 100677253 -96518179 + AT_rich Low_complexity Low_complexity 1 49 0 2 1353 2486 250 51 70 chr1 100677347 100677488 -96517944 - Lx7 LINE L1 0 7696 7558 2 1353 186 43 0 0 chr1 100677488 100677511 -96517921 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1353 2486 250 51 70 chr1 100677511 100678239 -96517193 - Lx7 LINE L1 -139 7557 6844 2 1353 290 193 0 0 chr1 100678239 100678296 -96517136 + Lx7 LINE L1 6777 6833 -863 2 1353 24 53 0 0 chr1 100678943 100678981 -96516451 + AT_rich Low_complexity Low_complexity 1 38 0 2 1353 270 0 0 0 chr1 100679309 100679339 -96516093 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1353 846 116 0 0 chr1 100679339 100679468 -96515964 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 1353 5274 198 37 14 chr1 100679512 100680549 -96514883 - Lx2 LINE L1 0 6997 5937 2 1353 451 273 64 80 chr1 100680551 100680738 -96514694 - Lx8 LINE L1 -340 7133 6950 2 1353 387 378 20 20 chr1 100681559 100681710 -96513722 - RSINE1 SINE B4 -4 161 11 2 1353 1382 175 109 33 chr1 100681770 100681966 -96513466 - RMER17C LTR ERVK 0 410 214 2 1353 498 33 0 0 chr1 100681966 100682026 -96513406 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1353 1382 175 97 46 chr1 100682026 100682264 -96513168 - RMER17C LTR ERVK -554 404 18 2 1353 461 309 0 0 chr1 100682386 100682496 -96512936 + ID_B1 SINE B4 115 224 0 2 1353 1549 189 89 13 chr1 100682619 100682810 -96512622 + RMER17C LTR ERVK 1 216 -194 2 1353 1062 102 0 0 chr1 100682810 100682977 -96512455 + (TC)n Simple_repeat Simple_repeat 2 168 0 2 1353 1549 189 89 13 chr1 100682977 100683166 -96512266 + RMER17C LTR ERVK 217 409 -1 2 1353 22 0 0 0 chr1 100683497 100683519 -96511913 + AT_rich Low_complexity Low_complexity 1 22 0 2 1353 338 327 58 57 chr1 100683806 100683894 -96511538 + RMER20B LTR ERVK 195 301 -326 2 1353 2387 99 70 38 chr1 100683894 100684292 -96511140 + IAPLTR2a LTR ERVK 1 411 0 2 1353 338 339 51 65 chr1 100684292 100684437 -96510995 + RMER20B LTR ERVK 282 416 -226 2 1353 243 281 0 111 chr1 100684762 100684870 -96510562 + RMER20B LTR ERVK 523 618 -9 2 1353 235 113 38 0 chr1 100685032 100685085 -96510347 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1353 822 311 79 39 chr1 100685102 100685407 -96510025 - ORR1B1 LTR MaLR -4 366 50 2 1353 252 0 0 0 chr1 100685567 100685595 -96509837 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1353 306 278 65 0 chr1 100685669 100685777 -96509655 + MER46C DNA MER2_type 102 216 -122 2 1353 183 80 0 0 chr1 100685810 100685835 -96509597 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 2 1353 1033 102 7 20 chr1 100685850 100686000 -96509432 - B1_Mus1 SINE Alu 0 148 1 2 1353 464 371 21 5 chr1 100686036 100686223 -96509209 + B4A SINE B4 2 191 -101 2 1353 456 327 56 30 chr1 100686245 100686513 -96508919 + B4A SINE B4 2 276 -16 2 1353 542 69 23 0 chr1 100686599 100686686 -96508746 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2 1353 560 252 61 217 chr1 100686686 100687120 -96508312 - ORR1B1-int LTR MaLR -1005 365 1 2 1353 1853 196 12 74 chr1 100687122 100687540 -96507892 - ORR1B1 LTR MaLR -2 392 1 2 1353 344 288 0 0 chr1 100687559 100687632 -96507800 + Lx8 LINE L1 7258 7330 -143 2 1353 521 360 173 8 chr1 100688255 100688521 -96506911 + ORR1E LTR MaLR 3 312 -47 2 1353 219 298 0 0 chr1 100688779 100688826 -96506606 - B3 SINE B2 -167 49 3 2 1353 246 260 14 0 chr1 100690297 100690370 -96505062 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1353 395 252 81 0 chr1 100690382 100690493 -96504939 + ORR1D2 LTR MaLR 251 370 0 2 1353 375 271 74 9 chr1 100690887 100690995 -96504437 - B4A SINE B4 -177 115 1 2 1353 5013 55 26 0 chr1 100691873 100692514 -96502918 - L1Md_F3 LINE L1 0 6584 5927 3 1353 369 261 25 0 chr1 100692860 100692979 -96502453 + MER2 DNA MER2_type 86 207 -138 3 1353 26873 10 2 0 chr1 100692979 100696070 -96499362 + L1Md_A LINE L1 2489 5586 -297 3 1353 8734 18 0 0 chr1 100696070 100697066 -96498366 + L1Md_A LINE L1 5587 6582 0 3 1353 31 58 0 0 chr1 100697244 100697296 -96498136 + AT_rich Low_complexity Low_complexity 1 52 0 3 1353 189 132 0 0 chr1 100697304 100697342 -96498090 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1353 225 94 0 0 chr1 100697489 100697521 -96497911 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1353 584 197 0 8 chr1 100697648 100697771 -96497661 + URR1B DNA MER1_type 102 223 -2 3 1353 444 317 58 88 chr1 100697779 100698087 -96497345 - Lx9 LINE L1 -335 7309 7011 3 1353 1382 170 147 30 chr1 100698157 100698474 -96496958 + RMER17B LTR ERVK 1 359 -599 3 1353 522 0 0 0 chr1 100698474 100698532 -96496900 + (TTCCC)n Simple_repeat Simple_repeat 1 58 0 3 1353 1382 170 147 30 chr1 100698532 100698547 -96496885 + RMER17B LTR ERVK 360 372 -586 3 1353 456 264 118 50 chr1 100698539 100698865 -96496567 + RMER17B LTR ERVK 543 942 -16 3 1353 238 326 21 0 chr1 100698865 100698960 -96496472 - Lx9 LINE L1 -688 6956 6860 3 1353 242 165 38 12 chr1 100699007 100699087 -96496345 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1353 956 277 37 8 chr1 100699399 100699677 -96495755 - MTE2b LTR MaLR -6 364 90 3 1353 238 215 46 0 chr1 100700374 100700439 -96494993 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1353 29121 59 1 18 chr1 100700500 100704431 -96491001 + L1_Mm LINE L1 1393 5258 -625 3 1353 936 50 0 0 chr1 100704430 100704549 -96490883 - L1Md_F3 LINE L1 -445 6139 6021 3 1353 22 0 0 0 chr1 100704650 100704672 -96490760 + AT_rich Low_complexity Low_complexity 1 22 0 3 1353 309 359 71 62 chr1 100704769 100704995 -96490437 + B4 SINE B4 6 233 -59 3 1353 372 43 0 0 chr1 100705105 100705151 -96490281 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1353 552 15 0 0 chr1 100705889 100705954 -96489478 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1353 594 41 0 0 chr1 100705955 100706028 -96489404 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1353 836 351 48 23 chr1 100706417 100706816 -96488616 - Lx8 LINE L1 -84 7389 6981 3 1353 692 336 41 34 chr1 100708117 100708385 -96487047 + B4 SINE B4 6 275 -17 3 1353 2599 29 0 0 chr1 100708385 100708694 -96486738 - L1Md_T LINE L1 -507 6075 5767 3 1353 3860 42 25 0 chr1 100708694 100709170 -96486262 + L1Md_T LINE L1 6093 6580 -2 3 1353 241 421 0 29 chr1 100709413 100709550 -96485882 + RSINE1 SINE B4 12 144 -21 3 1353 335 358 153 11 chr1 100709643 100710270 -96485162 - L2 LINE L2 -1311 2108 1393 3 1353 964 318 58 10 chr1 100710948 100711256 -96484176 - MTE2b LTR MaLR -56 323 1 3 1353 1174 307 52 30 chr1 100711456 100711862 -96483570 + MTD LTR MaLR 5 419 0 3 1353 439 364 118 29 chr1 100712225 100712463 -96482969 - B4 SINE B4 -20 272 14 3 1353 291 28 0 0 chr1 100712506 100712542 -96482890 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1353 291 340 63 130 chr1 100712716 100713047 -96482385 + RLTR25A LTR ERVK 7 315 -788 3 1353 6171 204 52 80 chr1 100714249 100715257 -96480175 + MYSERV16_I-int LTR ERVK 21 1037 -1289 3 1353 283 113 0 0 chr1 100715257 100715320 -96480112 + L1_Mus4 LINE L1 6581 6654 0 3 1353 6171 204 52 80 chr1 100715320 100715929 -96479503 + MYSERV16_I-int LTR ERVK 1038 1653 -673 3 1353 1260 258 46 41 chr1 100715930 100716298 -96479134 + RLTR20B2 LTR ERVK 112 481 -79 3 1353 1708 76 4 23 chr1 100716298 100716555 -96478877 - L1_Mm LINE L1 -1420 4463 4212 3 1353 2887 30 0 0 chr1 100716549 100716882 -96478550 + L1Md_F2 LINE L1 5900 6232 -350 3 1353 413 114 0 28 chr1 100716891 100716963 -96478469 - L1_Mm LINE L1 -1419 4464 4395 3 1353 2824 42 0 6 chr1 100716963 100717318 -96478114 + L1Md_F2 LINE L1 6219 6571 -11 3 1353 9437 100 18 35 chr1 100717321 100718825 -96476607 - Lx3_Mus LINE L1 0 7009 5534 3 1353 282 57 56 28 chr1 100718850 100718922 -96476510 + (CAAAA)n Simple_repeat Simple_repeat 1 74 0 3 1353 5273 99 13 23 chr1 100718923 100719582 -96475850 + L1_Mur1 LINE L1 4637 5285 -601 3 1353 3384 38 0 0 chr1 100719582 100719978 -96475454 - MTA_Mm LTR MaLR 0 396 1 3 1353 5273 99 13 23 chr1 100719978 100720136 -96475296 + L1_Mur1 LINE L1 5286 5446 -440 3 1353 371 261 93 59 chr1 100720136 100720254 -96475178 + RLTR20B2 LTR ERVK 439 560 0 3 1353 298 378 18 0 chr1 100720258 100720369 -96475063 - MTEa LTR MaLR -248 131 19 3 1353 643 289 47 124 chr1 100720616 100720756 -96474676 + MTE2a LTR MaLR 8 118 -261 3 1353 1844 212 52 0 chr1 100720756 100721156 -96474276 - MTC LTR MaLR 0 421 1 3 1353 643 289 47 124 chr1 100721156 100721418 -96474014 + MTE2a LTR MaLR 119 379 0 3 1353 188 352 0 0 chr1 100721753 100721807 -96473625 - L2b LINE L2 -7 3368 3315 3 1353 342 371 126 40 chr1 100722493 100722591 -96472841 - MT2A LTR ERVL -103 430 335 3 1353 1152 41 7 7 chr1 100722591 100722737 -96472695 + B1_Mus1 SINE Alu 1 146 -2 3 1353 342 371 126 40 chr1 100722737 100722899 -96472533 - MT2A LTR ERVL -199 334 2 3 1353 449 293 37 15 chr1 100722899 100723034 -96472398 - MTEa LTR MaLR -241 138 1 3 1353 306 285 126 91 chr1 100723096 100723239 -96472193 - MTE2a LTR MaLR -149 230 83 3 1353 241 305 131 33 chr1 100724528 100724650 -96470782 - Lx8 LINE L1 -98 7375 7242 3 1353 207 0 0 0 chr1 100724775 100724798 -96470634 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1353 1111 83 0 0 chr1 100724798 100724934 -96470498 - B1_Mm SINE Alu -10 137 2 3 1353 275 286 65 0 chr1 100725148 100725225 -96470207 + MTE2a LTR MaLR 1 82 -297 3 1353 378 342 44 50 chr1 100725433 100725593 -96469839 - MTE2a LTR MaLR -163 216 58 3 1353 342 123 0 0 chr1 100725740 100725797 -96469635 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1353 305 317 103 40 chr1 100727139 100727313 -96468119 - B3A SINE B2 -12 186 2 3 1353 2472 91 120 0 chr1 100727518 100727704 -96467728 - BGLII_Mus LTR ERVK -1 421 204 3 1353 741 79 0 0 chr1 100727704 100727805 -96467627 + (TTCTC)n Simple_repeat Simple_repeat 1 101 0 3 1353 2472 91 120 0 chr1 100727805 100727992 -96467440 - BGLII_Mus LTR ERVK -219 203 5 3 1353 530 233 116 52 chr1 100728445 100728617 -96466815 + B3A SINE B2 5 187 -11 3 1353 495 331 38 51 chr1 100729639 100729932 -96465500 + B4 SINE B4 2 290 -2 3 1353 2569 125 10 15 chr1 100729937 100730335 -96465097 + MTA_Mm LTR MaLR 1 396 0 3 1353 524 254 28 35 chr1 100730511 100730654 -96464778 + ORR1D2 LTR MaLR 224 365 -5 3 1353 1295 279 119 15 chr1 100730665 100731137 -96464295 + ORR1D2-int LTR MaLR 12 532 -838 3 1353 1374 260 85 101 chr1 100731222 100731662 -96463770 + ORR1D2-int LTR MaLR 750 1194 -176 3 1353 225 0 0 0 chr1 100731662 100731687 -96463745 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 3 1353 1374 260 85 101 chr1 100731687 100731871 -96463561 + ORR1D2-int LTR MaLR 1195 1364 -6 3 1353 1040 300 46 54 chr1 100731877 100732161 -96463271 + ORR1D2 LTR MaLR 1 288 -82 3 1353 1874 227 56 29 chr1 100732161 100732471 -96462961 + RLTR19 LTR ERVK 1 322 -177 3 1353 267 31 0 0 chr1 100732471 100732503 -96462929 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1353 1874 227 56 29 chr1 100732503 100732678 -96462754 + RLTR19 LTR ERVK 323 499 0 3 1353 1040 300 46 54 chr1 100732678 100732766 -96462666 + ORR1D2 LTR MaLR 289 370 0 3 1353 21 71 0 0 chr1 100733221 100733263 -96462169 + AT_rich Low_complexity Low_complexity 1 42 0 3 1353 1643 124 124 0 chr1 100733744 100734035 -96461397 - IAPEY3_LTR LTR ERVK -5 327 1 3 1353 3899 137 56 7 chr1 100735176 100735858 -96459574 - RLTR19B LTR ERVK 0 715 1 3 1353 40416 16 1 6 chr1 100736726 100742923 -96452509 - L1Md_A LINE L1 0 6582 422 3 1353 941 245 254 12 chr1 100743101 100743527 -96451905 - MT2A LTR ERVL -4 529 1 3 1353 1601 210 62 28 chr1 100743605 100743963 -96451469 + ORR1C1 LTR MaLR 1 370 -8 3 1353 21 0 0 0 chr1 100744294 100744315 -96451117 + AT_rich Low_complexity Low_complexity 1 21 0 3 1353 262 229 16 0 chr1 100744459 100744520 -96450912 - MER57A-int LTR ERV1 -5026 1161 1100 3 1353 510 270 82 55 chr1 100744531 100744817 -96450615 + RMER2 LTR ERV1 5 360 -207 3 1353 538 14 40 0 chr1 100744938 100745012 -96450420 + (CAAAA)n Simple_repeat Simple_repeat 2 78 0 3 1353 277 232 0 28 chr1 100745095 100745166 -96450266 - MER34A LTR ERV1 -489 82 14 3 1353 229 246 0 0 chr1 100745590 100745647 -96449785 + GA-rich Low_complexity Low_complexity 2 58 0 3 1353 200 34 0 33 chr1 100746002 100746032 -96449400 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1353 831 274 42 0 chr1 100746062 100746274 -96449158 - MTE2b LTR MaLR -101 278 58 3 1353 1644 66 0 0 chr1 100746686 100746898 -96448534 - L1_Mus1 LINE L1 0 6567 6356 3 1353 581 313 0 0 chr1 100747146 100747296 -96448136 + B3A SINE B2 2 151 -47 3 1353 333 0 0 0 chr1 100747304 100747341 -96448091 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1353 1685 128 19 0 chr1 100747830 100748095 -96447337 + Lx2A1 LINE L1 5838 6107 -901 3 1353 898 224 46 9 chr1 100748247 100748463 -96446969 - RMER10A LTR ERVL -199 243 20 3 1353 4290 128 0 12 chr1 100748684 100749335 -96446097 - Lx3A LINE L1 -153 6828 6186 3 1353 1006 272 65 62 chr1 100749548 100749870 -96445562 + MTEa LTR MaLR 2 324 -55 3 1353 345 327 17 34 chr1 100750429 100750546 -96444886 - RSINE1 SINE B4 -39 126 12 3 1353 29 47 0 0 chr1 100750608 100750651 -96444781 + AT_rich Low_complexity Low_complexity 1 43 0 3 1353 371 362 28 28 chr1 100750651 100750796 -96444636 - B3 SINE B2 -29 187 43 3 1353 497 350 38 21 chr1 100751031 100751270 -96444162 + B4 SINE B4 6 248 -44 3 1353 321 372 93 0 chr1 100753121 100753250 -96442182 - ID_B1 SINE B4 -81 143 3 3 1353 191 61 0 29 chr1 100753466 100753500 -96441932 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1353 3947 232 48 33 chr1 100756086 100757228 -96438204 + RLTR25A LTR ERVK 1 1028 0 3 1353 409 273 129 53 chr1 100757229 100757399 -96438033 - MTE2b LTR MaLR -54 325 143 3 1353 1526 137 95 73 chr1 100757616 100757932 -96437500 + ORR1A4 LTR MaLR 5 327 -2 3 1353 425 268 62 8 chr1 100758202 100758330 -96437102 - MTE2b LTR MaLR -240 139 5 3 1353 975 297 59 31 chr1 100758581 100758939 -96436493 - MTE2a LTR MaLR 0 379 12 3 1353 333 0 0 0 chr1 100760124 100760161 -96435271 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1353 486 374 0 12 chr1 100760436 100760609 -96434823 + B3A SINE B2 6 176 -22 3 1353 861 325 71 6 chr1 100760623 100760945 -96434487 - MTD LTR MaLR -15 404 62 3 1353 301 267 96 73 chr1 100760946 100761124 -96434308 - Lx9 LINE L1 -206 7438 7257 3 1353 1388 268 78 79 chr1 100761127 100761695 -96433737 + RMER2 LTR ERV1 1 567 0 3 1353 3955 96 14 0 chr1 100762225 100762786 -96432646 - L1_Mus2 LINE L1 0 6566 5998 4 1353 3065 42 10 3 chr1 100762786 100763171 -96432261 - L1Md_F3 LINE L1 -14 6570 6183 4 1353 3493 27 2 0 chr1 100763171 100763582 -96431850 + L1Md_F3 LINE L1 5778 6189 -395 4 1353 28374 140 16 30 chr1 100763573 100769341 -96426091 - L1_Mus2 LINE L1 -550 6016 367 4 1353 505 306 56 75 chr1 100769578 100769899 -96425533 + MuRRS4-int LTR ERV1 1040 1354 -3709 4 1353 8633 22 2 0 chr1 100769904 100770908 -96424524 + L1Md_T LINE L1 4581 5586 -297 4 1353 8360 36 0 0 chr1 100770908 100771904 -96423528 + L1Md_T LINE L1 5587 6582 0 4 1353 21 57 0 0 chr1 100771934 100771969 -96423463 + AT_rich Low_complexity Low_complexity 1 35 0 4 1353 338 286 51 29 chr1 100772273 100772410 -96423022 + MuRRS4-int LTR ERV1 1823 1962 -2728 4 1353 516 335 52 38 chr1 100773035 100773302 -96422130 + MT2A LTR ERVL 183 453 -80 4 1353 414 100 0 0 chr1 100773302 100773362 -96422070 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 4 1353 4264 219 46 39 chr1 100773363 100773953 -96421479 - Lx5 LINE L1 -1 7049 6469 4 1353 6790 77 9 0 chr1 100773953 100774838 -96420594 - RLTR13B1 LTR ERVK 0 893 1 4 1353 4264 219 46 39 chr1 100774838 100775260 -96420172 - Lx5 LINE L1 -582 6468 6029 4 1353 453 19 0 0 chr1 100775400 100775454 -96419978 + (CATA)n Simple_repeat Simple_repeat 1 54 0 4 1353 454 323 77 59 chr1 100775650 100775989 -96419443 - MTD LTR MaLR -74 345 1 4 1353 901 163 0 11 chr1 100776796 100776976 -96418456 + GA-rich Low_complexity Low_complexity 3 180 0 4 1353 368 82 16 0 chr1 100777268 100777329 -96418103 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1353 711 315 15 67 chr1 100777356 100777625 -96417807 + B4A SINE B4 10 264 -28 4 1353 339 25 0 0 chr1 100777633 100777673 -96417759 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1353 1003 281 51 49 chr1 100778224 100778594 -96416838 + RLTR14 LTR ERV1 1 371 -11 4 1353 302 109 0 0 chr1 100779681 100779727 -96415705 - Lx3_Mus LINE L1 -1181 5828 5783 4 1353 36333 45 0 3 chr1 100779757 100786215 -96409217 - L1Md_T LINE L1 0 6585 49 4 1353 5559 79 31 30 chr1 100786220 100787016 -96408416 - L1_Mus2 LINE L1 -7 6559 5763 4 1353 1116 177 67 28 chr1 100787016 100787271 -96408161 + Lx3_Mus LINE L1 6737 7001 -8 4 1353 5388 56 15 4 chr1 100787391 100788072 -96407360 + L1Md_F2 LINE L1 5883 6570 -12 4 1353 660 273 38 19 chr1 100788484 100788693 -96406739 - MTD LTR MaLR 0 419 207 4 1353 510 243 82 159 chr1 100788730 100789114 -96406318 - RMER2 LTR ERV1 -62 505 5 4 1353 553 239 118 37 chr1 100789124 100789311 -96406121 - MTD LTR MaLR -210 209 8 4 1353 278 98 0 19 chr1 100789369 100789421 -96406011 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1353 26 0 0 0 chr1 100789950 100789976 -96405456 + AT_rich Low_complexity Low_complexity 1 26 0 4 1353 252 213 0 0 chr1 100790004 100790065 -96405367 + (TATG)n Simple_repeat Simple_repeat 3 63 0 4 1353 372 125 0 0 chr1 100790226 100790290 -96405142 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1353 458 370 11 6 chr1 100790298 100790480 -96404952 - B3A SINE B2 -15 183 1 4 1353 1093 293 66 45 chr1 100790616 100791099 -96404333 + RCHARR1 DNA MER1_type 6 498 -476 4 1353 291 137 78 0 chr1 100791219 100791270 -96404162 + RSINE1 SINE B4 12 66 -99 4 1353 639 95 0 0 chr1 100791310 100791415 -96404017 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1353 275 49 24 0 chr1 100791415 100791456 -96403976 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1353 1009 228 24 8 chr1 100791497 100791745 -96403687 + RCHARR1 DNA MER1_type 494 745 -229 4 169 33804 45 0 3 chr1 100792199 100797394 -96398038 + L1Md_T LINE L1 312 5589 -297 4 1354 8399 35 0 1 chr1 100797394 100798391 -96397041 + L1Md_T LINE L1 5590 6585 0 4 1354 293 285 22 13 chr1 100798973 100799075 -96396357 + MLT1A LTR MaLR 228 355 -53 4 1354 486 0 0 0 chr1 100799322 100799376 -96396056 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1354 20044 117 22 21 chr1 100799474 100803639 -96391793 - L1_Mus2 LINE L1 -1 6565 2404 4 1354 579 328 35 27 chr1 100803639 100804048 -96391384 - RLTR4_MM-int LTR ERV1 -3939 3839 3349 4 1354 401 203 22 36 chr1 100804137 100804275 -96391157 - Lx2 LINE L1 -4 6993 6858 4 1354 232 27 26 26 chr1 100804296 100804334 -96391098 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 4 1354 345 93 0 0 chr1 100804337 100804391 -96391041 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1354 459 283 15 23 chr1 100804428 100804558 -96390874 - B3A SINE B2 -69 129 1 4 1354 1730 271 53 28 chr1 100804857 100805385 -96390047 + RMER15 LTR ERVL 33 573 -2 4 1354 442 308 22 8 chr1 100805392 100805526 -96389906 + RSINE1 SINE B4 17 152 -13 4 1354 378 0 0 0 chr1 100805536 100805578 -96389854 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1354 2348 226 58 20 chr1 100805829 100806471 -96388961 - Lx5 LINE L1 -712 6338 5673 4 1354 391 231 83 23 chr1 100806469 100806602 -96388830 + Lx5 LINE L1 6909 7049 -1 4 1354 287 313 88 0 chr1 100806688 100806793 -96388639 + B1F SINE Alu 2 114 -6 4 1354 391 333 76 56 chr1 100807077 100807274 -96388158 - B3 SINE B2 -9 207 7 4 1354 1384 266 14 21 chr1 100807314 100807733 -96387699 + MTD LTR MaLR 2 417 -2 4 1354 450 328 37 5 chr1 100808339 100808529 -96386903 + B3A SINE B2 1 196 -2 4 1354 990 291 92 28 chr1 100808565 100808999 -96386433 - Lx8 LINE L1 -5 7468 7007 4 1354 342 0 0 0 chr1 100809549 100809587 -96385845 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1354 386 269 33 133 chr1 100810021 100810201 -96385231 + MTEa LTR MaLR 166 327 -52 4 1354 1930 120 13 10 chr1 100811212 100811515 -96383917 - L1_Mus3 LINE L1 -4 6634 6331 4 1354 353 377 43 82 chr1 100811515 100811723 -96383709 - B4A SINE B4 -84 208 9 4 1354 282 47 50 3 chr1 100812789 100812834 -96382598 - MT2A LTR ERVL 0 562 494 4 1354 189 0 0 0 chr1 100812834 100812855 -96382577 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1354 3440 69 0 0 chr1 100812870 100813331 -96382101 - L1Md_F2 LINE L1 -252 6330 5870 4 1354 243 83 0 0 chr1 100813331 100813367 -96382065 + U5 snRNA snRNA 9 44 -72 4 1354 333 0 0 0 chr1 100813907 100813944 -96381488 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1354 771 104 0 0 chr1 100814122 100814237 -96381195 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1354 628 309 70 67 chr1 100816116 100816386 -96379046 + RMER15 LTR ERVL 302 572 -3 4 1354 1045 109 0 26 chr1 100817646 100817658 -96377774 - B1_Mus1 SINE Alu 0 148 140 4 1354 225 65 0 0 chr1 100817658 100817689 -96377743 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1354 1045 109 0 26 chr1 100817689 100817827 -96377605 - B1_Mus1 SINE Alu -9 139 2 4 1354 459 35 0 0 chr1 100818428 100818485 -96376947 + (TAA)n Simple_repeat Simple_repeat 3 59 0 4 1354 21 0 0 0 chr1 100818512 100818533 -96376899 + AT_rich Low_complexity Low_complexity 1 21 0 4 1354 517 316 13 25 chr1 100819080 100819239 -96376193 + B3 SINE B2 60 216 0 4 1354 260 330 0 42 chr1 100820085 100820180 -96375252 + MTE2a LTR MaLR 8 98 -281 4 1354 973 266 51 64 chr1 100820180 100820467 -96374965 + MTE2a LTR MaLR 58 338 -41 4 1354 405 0 0 0 chr1 100820467 100820512 -96374920 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 4 1354 973 266 51 64 chr1 100820512 100820537 -96374895 + MTE2a LTR MaLR 339 366 -13 4 1354 3969 54 2 6 chr1 100822055 100822554 -96372878 + RLTR1C LTR ERV1 1 497 -6 4 1354 2527 205 94 15 chr1 100822548 100823016 -96372416 + RLTR26 LTR ERVK 11 528 -114 4 1354 4613 59 8 2 chr1 100823016 100823609 -96371823 + L1Md_F2 LINE L1 5986 6582 0 4 1354 2527 205 94 15 chr1 100823609 100823725 -96371707 + RLTR26 LTR ERVK 529 641 -1 4 1354 608 26 13 0 chr1 100823725 100823803 -96371629 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1354 441 84 0 0 chr1 100823803 100823874 -96371558 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 4 1354 546 268 49 56 chr1 100824376 100824596 -96370836 + MTE2b LTR MaLR 1 238 -141 4 1354 533 302 77 36 chr1 100824597 100824877 -96370555 + MTE2b LTR MaLR 70 370 -9 4 1354 642 26 0 0 chr1 100824923 100824999 -96370433 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1354 230 232 85 0 chr1 100825143 100825225 -96370207 + URR1B DNA MER1_type 118 206 -19 4 1354 388 372 9 0 chr1 100825233 100825346 -96370086 - RSINE1 SINE B4 -40 125 12 4 1354 791 350 18 18 chr1 100825364 100825585 -96369847 - B4A SINE B4 -71 221 1 4 1354 180 125 0 0 chr1 100825682 100825714 -96369718 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1354 613 198 63 0 chr1 100825721 100825847 -96369585 - B1_Mus2 SINE Alu 0 147 14 4 1354 376 364 62 68 chr1 100826403 100826754 -96368678 + ORR1E LTR MaLR 1 371 -8 4 1354 468 111 0 0 chr1 100827088 100827169 -96368263 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1354 252 0 0 0 chr1 100827169 100827197 -96368235 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1354 219 36 0 0 chr1 100828096 100828124 -96367308 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1354 388 325 51 23 chr1 100828500 100828717 -96366715 + L1M5 LINE L1 4486 4708 -1438 4 1354 554 282 74 63 chr1 100829070 100829259 -96366173 + MTE2b LTR MaLR 57 247 -132 4 1354 318 318 12 0 chr1 100830133 100830218 -96365214 - ID_B1 SINE B4 -10 214 129 4 1354 24 32 0 0 chr1 100830222 100830253 -96365179 + AT_rich Low_complexity Low_complexity 1 31 0 4 1354 5409 138 20 2 chr1 100830265 100831184 -96364248 - Lx LINE L1 -7 6647 5713 4 1354 4504 189 24 32 chr1 100831182 100832240 -96363192 - L1_Mur2 LINE L1 -780 5097 4049 4 1354 375 78 0 0 chr1 100832349 100832400 -96363032 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1354 22868 142 64 33 chr1 100832897 100834681 -96360751 + L1_Mur1 LINE L1 4 2153 -3733 4 1354 3658 61 25 2 chr1 100834681 100835159 -96360273 + L1_Mus1 LINE L1 6078 6566 -1 4 1354 22868 111 12 28 chr1 100835159 100835722 -96359710 + L1_Mur1 LINE L1 2154 2643 -3243 4 1354 212 0 36 0 chr1 100835722 100835750 -96359682 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1354 22868 111 12 28 chr1 100835750 100838016 -96357416 + L1_Mur1 LINE L1 2644 4926 -960 4 1354 6445 137 25 55 chr1 100838017 100838675 -96356757 + Lx3_Mus LINE L1 5856 6482 -527 4 1354 6873 79 5 0 chr1 100838675 100839564 -96355868 + RLTR13B1 LTR ERVK 1 893 0 4 1354 6445 137 25 55 chr1 100839564 100840091 -96355341 + Lx3_Mus LINE L1 6483 7006 -3 4 1354 272 355 0 0 chr1 100840742 100840818 -96354614 + PB1D10 SINE Alu 1 76 -41 4 1354 268 398 17 17 chr1 100840785 100840905 -96354527 - B4 SINE B4 -171 121 2 4 1354 23 0 0 0 chr1 100841413 100841436 -96353996 + AT_rich Low_complexity Low_complexity 1 23 0 5 1354 1918 62 4 0 chr1 100841437 100841681 -96353751 - L1_Mus1 LINE L1 -1 6566 6322 5 1354 1337 61 0 0 chr1 100841681 100841846 -96353586 + L1_Mus1 LINE L1 6123 6287 -280 5 1354 249 302 87 79 chr1 100841847 100841985 -96353447 + PB1D9 SINE Alu 10 145 -4 5 1354 4505 184 1 12 chr1 100842074 100842895 -96352537 - Lx2 LINE L1 0 6997 6186 5 1354 2336 186 2 17 chr1 100842903 100843363 -96352069 + L1_Mur1 LINE L1 4576 5028 -858 5 1354 38010 12 0 7 chr1 100843364 100848541 -96346891 + L1Md_A LINE L1 452 5586 -297 5 1354 8582 21 2 0 chr1 100848541 100849535 -96345897 + L1Md_A LINE L1 5587 6582 0 5 1354 2838 182 8 4 chr1 100849536 100850072 -96345360 + L1_Mur1 LINE L1 5016 5553 -333 5 1354 252 100 0 0 chr1 100850899 100850939 -96344493 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1354 307 365 69 18 chr1 100850947 100851223 -96344209 - B4A SINE B4 0 292 3 5 1354 2101 172 45 33 chr1 100851997 100852419 -96343013 - RLTR33 LTR ERVK -4 674 248 5 1354 25 0 0 0 chr1 100853112 100853137 -96342295 + AT_rich Low_complexity Low_complexity 1 25 0 5 1354 1312 319 27 0 chr1 100853346 100853713 -96341719 - MTD LTR MaLR 0 419 43 5 1354 570 357 94 8 chr1 100853733 100853998 -96341434 - B4A SINE B4 0 292 5 5 1354 306 115 0 0 chr1 100854436 100854488 -96340944 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1354 224 286 0 7 chr1 100854610 100854751 -96340681 + (TATG)n Simple_repeat Simple_repeat 3 142 0 5 1354 399 161 25 0 chr1 100854974 100855055 -96340377 - RMER4B LTR ERVK 0 585 503 5 1354 1590 221 99 29 chr1 100855057 100855500 -96339932 - RMER4B LTR ERVK 0 585 112 5 1354 28 0 0 0 chr1 100855727 100855755 -96339677 + AT_rich Low_complexity Low_complexity 1 28 0 5 1354 407 110 0 0 chr1 100856179 100856252 -96339180 - Lx3_Mus LINE L1 0 7009 6937 5 1354 598 338 43 98 chr1 100856880 100857185 -96338247 + B4 SINE B4 5 292 0 5 1354 418 339 71 46 chr1 100857544 100857894 -96337538 + BGLII_B LTR ERVK 62 414 -27 5 1354 353 355 148 0 chr1 100857947 100858116 -96337316 + MTEa LTR MaLR 21 214 -165 5 1354 638 93 9 0 chr1 100858116 100858224 -96337208 + (TCTCTG)n Simple_repeat Simple_repeat 2 110 0 5 1354 361 282 173 0 chr1 100858227 100858383 -96337049 + MTEa LTR MaLR 197 379 0 5 1354 213 39 0 0 chr1 100858480 100858506 -96336926 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1354 321 47 0 0 chr1 100858516 100858559 -96336873 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1354 284 336 18 26 chr1 100858586 100858699 -96336733 - MER72B LTR ERV1 -235 533 422 5 1354 473 268 187 82 chr1 100860002 100860392 -96335040 + MER57C2 LTR ERV1 1 431 -3 5 1354 215 402 0 12 chr1 100860425 100860508 -96334924 - ID2 SINE ID 0 83 2 5 1354 434 18 0 18 chr1 100861391 100861447 -96333985 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1354 221 158 0 34 chr1 100861467 100861526 -96333906 + (TATG)n Simple_repeat Simple_repeat 2 58 0 5 1354 395 321 100 27 chr1 100861584 100861843 -96333589 + B4A SINE B4 1 278 -14 5 1354 4752 85 16 53 chr1 100862417 100863165 -96332267 + RLTR22_Mus LTR ERVK 1 720 -1088 5 1354 4209 85 2 0 chr1 100863165 100863916 -96331516 - L1_Mus3 LINE L1 -607 6031 5278 5 1354 593 130 0 47 chr1 100863916 100864045 -96331387 + RLTR22_Mur LTR ERVK 710 832 -1016 5 1354 379 287 111 37 chr1 100864261 100864492 -96330940 + RMER12 LTR ERVK 1101 1322 0 5 1354 8980 10 0 0 chr1 100865151 100866793 -96328639 - L1Md_T LINE L1 0 6582 4941 5 1354 253 254 0 0 chr1 100868159 100868214 -96327218 + B4 SINE B4 10 64 -228 5 1354 324 48 0 0 chr1 100869110 100869152 -96326280 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1354 947 99 109 17 chr1 100869162 100869337 -96326095 - Lx LINE L1 -1 6653 6463 5 1354 233 66 0 106 chr1 100869609 100869694 -96325738 + A-rich Low_complexity Low_complexity 2 77 0 5 1354 6838 174 15 21 chr1 100869694 100871273 -96324159 - Lx4A LINE L1 -134 6924 5349 5 1354 1480 145 181 5 chr1 100871272 100871709 -96323723 - Lx LINE L1 -86 6568 6055 5 1354 2705 159 31 4 chr1 100871692 100872211 -96323221 - Lx4A LINE L1 -515 5362 4830 5 1354 1160 184 17 0 chr1 100873275 100873509 -96321923 - L1_Mur2 LINE L1 -958 4919 4682 5 1354 894 274 18 5 chr1 100873511 100873731 -96321701 + Lx5 LINE L1 6828 7050 0 5 1354 507 271 104 32 chr1 100873754 100873975 -96321457 + B4A SINE B4 3 239 -53 5 1354 804 297 37 9 chr1 100874080 100874305 -96321127 + Lx5 LINE L1 6117 6356 -694 5 1354 366 23 0 0 chr1 100874312 100874355 -96321077 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1354 483 311 97 31 chr1 100874406 100874602 -96320830 - B4A SINE B4 -60 232 24 5 1354 771 275 6 0 chr1 100874812 100874990 -96320442 + B3 SINE B2 23 201 -15 5 1354 22 70 0 0 chr1 100875145 100875188 -96320244 + AT_rich Low_complexity Low_complexity 1 43 0 5 1354 415 312 25 10 chr1 100875357 100875499 -96319933 - B1F SINE Alu -6 143 1 5 1354 420 20 0 0 chr1 100875614 100875663 -96319769 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1354 406 279 71 65 chr1 100875993 100876177 -96319255 - B2_Mm2 SINE B2 -9 186 2 5 1354 8115 50 2 0 chr1 100876222 100877758 -96317674 - L1Md_F2 LINE L1 -12 6570 5032 5 1354 527 62 0 0 chr1 100877747 100877812 -96317620 + L1Md_F2 LINE L1 5029 5093 -790 5 1354 429 20 0 0 chr1 100878453 100878503 -96316929 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1354 414 0 0 0 chr1 100878504 100878550 -96316882 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1354 327 352 95 8 chr1 100879188 100879314 -96316118 + B4A SINE B4 2 138 -154 5 1354 246 355 26 0 chr1 100880276 100880352 -96315080 - 5S rRNA rRNA -34 87 10 5 1354 260 211 14 0 chr1 100880857 100880928 -96314504 + GA-rich Low_complexity Low_complexity 1 72 0 5 1354 2060 37 0 0 chr1 100881389 100881634 -96313798 + L1Md_T LINE L1 6337 6581 -1 5 1354 576 380 67 15 chr1 100881770 100882040 -96313392 + B4 SINE B4 5 288 -4 5 1354 279 317 0 0 chr1 100882045 100882146 -96313286 + (CATA)n Simple_repeat Simple_repeat 4 104 0 5 1354 1800 224 63 38 chr1 100882243 100882717 -96312715 + RLTR20B3 LTR ERVK 1 486 -91 5 1354 771 138 18 66 chr1 100882726 100883000 -96312432 + CT-rich Low_complexity Low_complexity 1 260 0 5 1354 488 187 21 21 chr1 100883003 100883096 -96312336 + RLTR20B3 LTR ERVK 480 572 -5 5 1354 292 239 42 76 chr1 100883912 100884030 -96311402 + RMER3D-int LTR ERVK 998 1111 -1731 5 1354 1104 197 17 26 chr1 100884511 100884745 -96310687 + MYSERV16_I-int LTR ERVK 1 232 -2094 5 1354 2840 175 40 10 chr1 100884751 100885347 -96310085 + MYSERV16_I-int LTR ERVK 1713 2326 0 5 1354 2544 214 14 30 chr1 100885347 100885873 -96309559 + RLTR20B2 LTR ERVK 1 521 -39 5 1354 3088 78 126 34 chr1 100885873 100886348 -96309084 + MURVY-LTR LTR ERV1 1 519 0 5 1354 2544 214 14 30 chr1 100886348 100886389 -96309043 + RLTR20B2 LTR ERVK 522 559 -1 5 1354 450 315 86 60 chr1 100886801 100887068 -96308364 + B4A SINE B4 5 278 -14 5 1354 372 59 0 0 chr1 100887110 100887161 -96308271 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1354 1329 58 0 0 chr1 100887161 100887331 -96308101 + (GA)n Simple_repeat Simple_repeat 2 172 0 5 1354 234 200 0 0 chr1 100887384 100887429 -96308003 - MLT1B LTR MaLR -220 170 126 5 1354 4324 192 76 40 chr1 100887432 100888493 -96306939 - RLTR25A LTR ERVK -4 1099 1 5 1354 305 319 35 158 chr1 100888546 100888717 -96306715 + B4A SINE B4 143 292 0 5 1354 198 176 0 0 chr1 100888718 100888769 -96306663 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1354 724 142 35 0 chr1 100889020 100889161 -96306271 + (TATATG)n Simple_repeat Simple_repeat 4 149 0 5 1354 789 308 7 68 chr1 100889336 100889646 -96305786 + B4 SINE B4 2 292 0 5 1354 350 173 10 0 chr1 100889648 100889752 -96305680 + (CA)n Simple_repeat Simple_repeat 1 105 0 5 1354 240 35 0 0 chr1 100889753 100889782 -96305650 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1354 192 77 0 0 chr1 100889782 100889807 -96305625 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1354 465 19 0 0 chr1 100889808 100889862 -96305570 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1354 216 0 0 0 chr1 100889862 100889885 -96305547 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1354 24 0 0 0 chr1 100889954 100889978 -96305454 + AT_rich Low_complexity Low_complexity 1 24 0 5 1354 337 279 58 22 chr1 100890579 100890718 -96304714 - RMER15 LTR ERVL -157 418 275 5 1354 467 196 0 58 chr1 100890844 100890947 -96304485 + RLTR23 LTR ERV1 8 104 -326 5 1354 383 43 41 61 chr1 100890950 100891048 -96304384 + (CAAAA)n Simple_repeat Simple_repeat 2 97 0 5 1354 751 288 75 26 chr1 100891127 100891434 -96303998 + RLTR23 LTR ERV1 109 430 0 5 1354 225 145 51 115 chr1 100891443 100891521 -96303911 - RMER15 LTR ERVL -500 75 3 5 1354 523 202 0 0 chr1 100891827 100891926 -96303506 - ORR1C2 LTR MaLR 0 384 286 5 1354 288 77 0 0 chr1 100892189 100892228 -96303204 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 5 1354 932 229 52 22 chr1 100892513 100892745 -96302687 - ORR1C2 LTR MaLR -142 242 4 5 1354 496 329 115 24 chr1 100892761 100893048 -96302384 - Lx8 LINE L1 -260 7213 6901 5 1354 2488 192 35 46 chr1 100893541 100894108 -96301324 - RLTR31_Mm LTR ERVK 0 561 1 5 1354 509 299 32 60 chr1 100894439 100894624 -96300808 - B3A SINE B2 -2 196 17 5 1354 215 362 88 74 chr1 100896132 100896347 -96299085 + B4 SINE B4 55 272 -20 5 1354 8591 63 0 0 chr1 100896519 100897624 -96297808 - L1Md_F2 LINE L1 -928 4955 3851 5 1354 4784 57 0 7 chr1 100897624 100898238 -96297194 + L1Md_F2 LINE L1 4977 5586 -297 5 1354 7634 57 17 3 chr1 100898238 100899219 -96296213 + L1Md_F2 LINE L1 5587 6581 -1 5 1354 207 0 0 0 chr1 100899271 100899294 -96296138 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1354 239 253 150 12 chr1 100900054 100900134 -96295298 + B2_Mm2 SINE B2 43 133 -62 5 1354 525 16 0 0 chr1 100900135 100900197 -96295235 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1354 1298 269 68 30 chr1 100900879 100901308 -96294124 - Lx8 LINE L1 -153 7320 6876 5 1354 246 80 39 20 chr1 100902362 100902413 -96293019 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1354 1425 208 82 15 chr1 100902484 100902826 -96292606 - ORR1B2 LTR MaLR -2 365 1 5 1354 606 335 56 0 chr1 100903633 100903812 -96291620 + B4A SINE B4 1 189 -103 5 1354 201 39 0 0 chr1 100903820 100903846 -96291586 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1354 609 110 0 0 chr1 100903849 100903958 -96291474 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1354 333 47 0 0 chr1 100903958 100904001 -96291431 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1354 5224 72 25 0 chr1 100905631 100906349 -96289083 - L1Md_F LINE L1 -2798 3085 2350 6 1354 4662 109 43 1 chr1 100906337 100907621 -96287811 - L1Md_F LINE L1 -4152 1731 391 6 1354 799 199 133 0 chr1 100908228 100908424 -96287008 - URR1A DNA MER1_type -3 223 2 6 1354 1763 207 42 5 chr1 100908554 100908932 -96286500 - ORR1B1 LTR MaLR -2 392 1 6 1354 35 54 0 0 chr1 100909572 100909628 -96285804 + AT_rich Low_complexity Low_complexity 1 56 0 6 1354 24 100 0 0 chr1 100909782 100909862 -96285570 + AT_rich Low_complexity Low_complexity 1 80 0 6 1354 488 211 0 1 chr1 100910355 100910448 -96284984 - L1_Mur2 LINE L1 -1991 4155 4028 6 1354 2941 112 25 2 chr1 100910448 100910895 -96284537 + L1_Mus4 LINE L1 6168 6624 -12 6 1354 267 303 16 63 chr1 100910895 100910928 -96284504 - L1_Mur2 LINE L1 -2084 4062 4035 6 1354 531 69 0 0 chr1 100911368 100911440 -96283992 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1354 198 0 0 0 chr1 100912137 100912159 -96283273 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1354 369 95 0 0 chr1 100912159 100912222 -96283210 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 6 1354 555 342 10 58 chr1 100912224 100912432 -96283000 + B3A SINE B2 1 198 0 6 1354 24 85 0 0 chr1 100912457 100912516 -96282916 + AT_rich Low_complexity Low_complexity 1 59 0 6 1354 226 335 170 33 chr1 100912642 100912883 -96282549 + B4 SINE B4 1 274 -18 6 1354 309 242 84 0 chr1 100913944 100914039 -96281393 + U6 snRNA snRNA 5 107 0 6 1354 593 117 0 0 chr1 100914052 100914146 -96281286 + Lx4B LINE L1 5783 5876 -1182 6 1354 1802 134 67 0 chr1 100914147 100914445 -96280987 + ORR1A2 LTR MaLR 1 318 -9 6 1354 8004 196 75 12 chr1 100914464 100916260 -96279172 + ORR1A2-int LTR MaLR 54 1963 0 6 1354 1505 172 17 14 chr1 100916260 100916533 -96278899 + ORR1A2 LTR MaLR 38 311 -16 6 1354 4337 234 44 21 chr1 100916541 100917636 -96277796 + Lx4B LINE L1 5873 6992 -66 6 1354 1642 161 54 54 chr1 100917643 100917790 -96277642 + ORR1A3 LTR MaLR 1 131 -195 6 1354 333 0 0 0 chr1 100917790 100917827 -96277605 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1354 1642 161 54 54 chr1 100917827 100917994 -96277438 + ORR1A3 LTR MaLR 132 313 -13 6 1354 21 71 0 0 chr1 100918045 100918087 -96277345 + AT_rich Low_complexity Low_complexity 1 42 0 6 1354 341 349 94 16 chr1 100918212 100918340 -96277092 + B3A SINE B2 40 177 -21 6 1354 446 314 136 16 chr1 100919220 100919330 -96276102 + B4A SINE B4 1 122 -170 6 1354 474 18 0 0 chr1 100919330 100919385 -96276047 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1354 446 314 136 16 chr1 100919385 100919465 -96275967 + B4A SINE B4 123 213 -79 6 1354 3870 226 37 30 chr1 100919465 100920364 -96275068 + RMER13B LTR ERVK 1 905 -3 6 1354 237 132 0 0 chr1 100920557 100920595 -96274837 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1354 893 142 6 19 chr1 100920638 100920796 -96274636 - B2_Mm2 SINE B2 -9 186 31 6 1354 390 42 0 0 chr1 100920796 100920844 -96274588 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 6 1354 7188 104 27 2 chr1 100920846 100921876 -96273556 - Lx LINE L1 -12 6642 5587 6 1354 212 205 0 0 chr1 100921920 100921959 -96273473 - B2_Mm2 SINE B2 -156 39 1 6 1354 2034 232 39 21 chr1 100922503 100923018 -96272414 - RLTR28 LTR ERVL 0 524 1 6 1354 474 264 65 85 chr1 100923413 100923566 -96271866 - ID_B1 SINE B4 -73 151 2 6 1354 985 302 51 62 chr1 100923986 100924002 -96271430 - MTE2b LTR MaLR -28 351 337 6 1354 303 28 0 0 chr1 100924002 100924038 -96271394 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1354 985 302 51 62 chr1 100924038 100924374 -96271058 - MTE2b LTR MaLR -43 336 3 6 1354 21 0 0 0 chr1 100924410 100924431 -96271001 + AT_rich Low_complexity Low_complexity 1 21 0 6 1354 752 50 10 0 chr1 100924807 100924908 -96270524 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 1354 474 290 50 12 chr1 100925055 100925347 -96270085 - MTE2b LTR MaLR -4 375 5 6 169 237 333 69 35 chr1 100925378 100925552 -96269880 + MLT1D LTR MaLR 323 502 -3 6 1355 3287 222 61 67 chr1 100926075 100926359 -96269073 + RMER19B LTR ERVK 2 236 -666 6 1355 203 0 0 36 chr1 100926359 100926387 -96269045 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 6 1355 3287 222 61 67 chr1 100926387 100927009 -96268423 + RMER19B LTR ERVK 237 901 -1 6 1355 4066 119 18 12 chr1 100927095 100927748 -96267684 + L1_Mus3 LINE L1 5982 6638 0 6 1355 507 85 0 0 chr1 100927942 100928024 -96267408 - L1_Mus2 LINE L1 -2 6564 6483 6 1355 747 76 0 9 chr1 100928025 100928131 -96267301 - BC1_Mm scRNA scRNA -45 107 3 6 1355 411 372 45 14 chr1 100928324 100928545 -96266887 - Lx8 LINE L1 -183 7290 7063 6 1355 381 159 0 0 chr1 100928545 100928608 -96266824 + MTC LTR MaLR 2 64 -357 6 1355 270 143 0 0 chr1 100928608 100928657 -96266775 + (CAA)n Simple_repeat Simple_repeat 1 49 0 6 1355 375 271 18 61 chr1 100928673 100928747 -96266685 + MTC LTR MaLR 100 168 -253 6 1355 2909 245 128 50 chr1 100928747 100929489 -96265943 + RMER12 LTR ERVK 1 764 -558 6 1355 807 55 0 0 chr1 100929489 100929598 -96265834 + (TCCA)n Simple_repeat Simple_repeat 4 112 0 6 1355 2909 249 132 48 chr1 100929598 100930023 -96265409 + RMER12 LTR ERVK 765 1171 -151 6 1355 1877 275 26 51 chr1 100930230 100930989 -96264443 - MYSERV16_I-int LTR ERVK -1585 741 2 6 1355 295 287 184 73 chr1 100931151 100931260 -96264172 - B1F2 SINE Alu -6 143 23 6 1355 403 181 72 0 chr1 100931562 100931645 -96263787 - MTE2b-int LTR MaLR -635 1328 1240 6 1355 265 103 448 0 chr1 100931648 100931706 -96263726 - MurERV4_19-int LTR ERVK -423 5357 5274 6 1355 300 179 73 180 chr1 100931706 100931856 -96263576 + RLTR11A2 LTR ERVK 394 527 0 6 1355 581 271 99 0 chr1 100932076 100932268 -96263164 + B3 SINE B2 1 211 -5 6 1355 690 323 90 21 chr1 100933685 100933973 -96261459 + MTE2b LTR MaLR 72 379 0 6 1355 735 296 5 32 chr1 100934249 100934434 -96260998 + ID_B1 SINE B4 6 185 -39 6 1355 254 29 0 28 chr1 100934656 100934692 -96260740 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1355 2842 163 67 0 chr1 100934692 100935188 -96260244 - Lx3C LINE L1 -11 6965 6437 6 1355 31376 92 6 7 chr1 100935362 100940513 -96254919 + L1Md_F2 LINE L1 230 5585 -298 6 1355 7448 72 4 2 chr1 100940514 100941506 -96253926 + L1Md_F2 LINE L1 5587 6580 -2 6 1355 24 53 0 0 chr1 100941589 100941627 -96253805 + AT_rich Low_complexity Low_complexity 1 38 0 6 1355 1165 266 39 19 chr1 100941682 100941989 -96253443 + MTE2b LTR MaLR 23 335 -44 6 1355 426 245 20 0 chr1 100942113 100942211 -96253221 + MTC LTR MaLR 1 100 -321 6 1355 1966 95 18 0 chr1 100942211 100942496 -96252936 + L1_Mus2 LINE L1 6274 6563 -3 6 1355 350 238 27 0 chr1 100943017 100943113 -96252319 + MIR SINE MIR 142 240 -28 6 1355 442 280 97 40 chr1 100943436 100943459 -96251973 - B3A SINE B2 -13 185 167 6 1355 183 42 0 0 chr1 100943459 100943483 -96251949 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 1355 442 280 97 40 chr1 100943483 100943634 -96251798 - B3A SINE B2 -32 166 1 6 1355 310 306 16 8 chr1 100943681 100943806 -96251626 - L1MA6 LINE L1 -123 6177 6052 6 1355 597 306 104 123 chr1 100944260 100944625 -96250807 - ORR1D2 LTR MaLR -5 365 8 6 1355 213 266 0 0 chr1 100945024 100945118 -96250314 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 1355 27 49 0 0 chr1 100945187 100945228 -96250204 + AT_rich Low_complexity Low_complexity 1 41 0 6 1355 33 56 0 0 chr1 100946386 100946440 -96248992 + AT_rich Low_complexity Low_complexity 1 54 0 6 1355 639 88 0 0 chr1 100946444 100946535 -96248897 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1355 243 0 0 0 chr1 100946535 100946561 -96248871 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1355 581 151 26 26 chr1 100947324 100947480 -96247952 - Lx LINE L1 -2 7642 7487 6 1355 234 295 83 83 chr1 100947604 100947700 -96247732 - B3A SINE B2 -16 182 87 6 1355 204 125 0 0 chr1 100947793 100947825 -96247607 + (TTA)n Simple_repeat Simple_repeat 1 32 0 6 1355 3274 163 7 7 chr1 100947837 100948399 -96247033 - Lx3A LINE L1 0 6981 6420 6 1355 242 96 75 19 chr1 100948511 100948617 -96246815 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 1355 6081 166 29 3 chr1 100949575 100951075 -96244357 - Lx LINE L1 0 6654 5103 6 1355 1069 155 10 0 chr1 100951087 100951280 -96244152 + L1_Mm LINE L1 4687 4881 -1002 6 1355 353 378 103 10 chr1 100951288 100951354 -96244078 + ID SINE ID 2 68 -156 6 1355 195 42 0 0 chr1 100951354 100951378 -96244054 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 1355 353 378 103 10 chr1 100951378 100951506 -96243926 + ID_B1 SINE B4 69 213 -11 6 1355 263 28 0 27 chr1 100951803 100951840 -96243592 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 6 1355 498 152 0 0 chr1 100951866 100951958 -96243474 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1355 430 346 29 53 chr1 100952089 100952260 -96243172 - B4 SINE B4 -124 168 2 6 1355 1062 103 7 0 chr1 100952312 100952458 -96242974 + B1_Mus2 SINE Alu 1 147 0 6 1355 1737 152 31 12 chr1 100952485 100952812 -96242620 + RLTR31_Mm LTR ERVK 3 335 -226 6 1355 22 0 0 0 chr1 100952847 100952869 -96242563 + AT_rich Low_complexity Low_complexity 1 22 0 6 1355 419 149 0 51 chr1 100952878 100952956 -96242476 + RMER3D-int LTR ERVK 1 74 -2768 6 1355 7927 56 4 2 chr1 100952959 100954222 -96241210 - L1Md_F2 LINE L1 -5 6577 5312 6 1355 566 243 72 62 chr1 100954270 100954577 -96240855 + RMER3D-int LTR ERVK 163 472 -2370 6 1355 1445 209 9 18 chr1 100954711 100955052 -96240380 + RMER3D-int LTR ERVK 1015 1352 -1490 6 1355 2053 200 72 89 chr1 100955095 100955759 -96239673 + RMER3D-int LTR ERVK 1471 2123 -719 6 1355 507 221 50 38 chr1 100955764 100955924 -96239508 + RMER3D-int LTR ERVK 2679 2840 -2 6 1355 2464 189 19 50 chr1 100955926 100956505 -96238927 + RLTR31_Mm LTR ERVK 1 561 0 6 1355 567 293 96 3 chr1 100956519 100956689 -96238743 - B3A SINE B2 -29 187 5 6 1355 536 269 7 36 chr1 100957521 100957660 -96237772 - RSINE1 SINE B4 0 165 31 6 1355 596 330 73 5 chr1 100957855 100958059 -96237373 - ID_B1 SINE B4 -1 223 6 6 1355 8190 38 3 4 chr1 100958689 100959788 -96235644 - L1Md_F2 LINE L1 0 6582 5485 6 1355 11280 126 16 20 chr1 100959810 100962525 -96232907 - L1VL1 LINE L1 -806 2892 193 6 1355 21 0 0 0 chr1 100962663 100962684 -96232748 + AT_rich Low_complexity Low_complexity 1 21 0 6 1355 411 21 0 0 chr1 100963031 100963079 -96232353 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1355 3260 40 2 25 chr1 100963824 100964229 -96231203 - MTA_Mm LTR MaLR 0 396 1 6 1355 3252 147 6 11 chr1 100964277 100964821 -96230611 + MT-int LTR MaLR 1 541 -557 6 1355 244 292 0 27 chr1 100965606 100965680 -96229752 + B3A SINE B2 3 74 -124 6 1355 631 340 72 40 chr1 100966598 100966874 -96228558 + B4 SINE B4 1 285 -7 6 1355 336 24 0 0 chr1 100966887 100966928 -96228504 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1355 1873 242 59 10 chr1 100967614 100968106 -96227326 + RMER5 LTR ERV1 4 519 -15 6 1355 248 270 16 0 chr1 100968140 100968203 -96227229 + RSINE1 SINE B4 102 165 0 6 1355 206 116 0 23 chr1 100968258 100968302 -96227130 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1355 567 261 81 0 chr1 100968618 100968779 -96226653 - Lx8 LINE L1 -310 7163 6990 7 1355 1281 51 19 5 chr1 100968790 100969004 -96226428 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 7 1355 645 14 0 0 chr1 100969015 100969089 -96226343 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 7 1355 392 187 113 65 chr1 100969411 100969640 -96225792 + RMER17C LTR ERVK 75 314 -96 7 1355 8077 50 0 2 chr1 100971726 100973063 -96222369 - L1Md_F2 LINE L1 0 6582 5249 7 1355 279 301 46 105 chr1 100973471 100973623 -96221809 + MTEa LTR MaLR 9 151 -228 7 1355 6160 104 7 8 chr1 100973669 100975247 -96220185 - L1VL4 LINE L1 -1750 1809 233 7 1355 1868 162 10 0 chr1 100975255 100975563 -96219869 - L1VL4 LINE L1 -5801 501 191 7 1355 535 300 6 85 chr1 100975570 100975734 -96219698 + B3A SINE B2 42 192 -6 7 1355 227 277 15 15 chr1 100975858 100975924 -96219508 - MLT1F-int LTR MaLR -1064 425 360 7 1355 374 279 9 43 chr1 100976051 100976167 -96219265 + RLTR20A LTR ERVK 5 116 -425 7 1355 1906 75 12 0 chr1 100976167 100976422 -96219010 - L1_Mus1 LINE L1 -388 6179 5922 7 1355 1495 87 0 0 chr1 100976445 100976653 -96218779 + L1_Mus1 LINE L1 6360 6567 0 7 1355 825 251 144 58 chr1 100976655 100976975 -96218457 + RLTR20A LTR ERVK 97 449 -92 7 1355 522 0 0 0 chr1 100976975 100977033 -96218399 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1355 261 0 0 0 chr1 100977033 100977061 -96218371 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1355 825 251 144 58 chr1 100977061 100977149 -96218283 + RLTR20A LTR ERVK 450 540 -1 7 1355 252 143 0 0 chr1 100977235 100977277 -96218155 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1355 1088 313 74 5 chr1 100977289 100977668 -96217764 + MTD LTR MaLR 1 405 -14 7 1355 414 357 83 7 chr1 100977961 100978105 -96217327 + RSINE1 SINE B4 3 157 -8 7 1355 4375 14 2 0 chr1 100979013 100979505 -96215927 + MT2_Mm LTR ERVL 1 493 0 7 1355 487 333 0 50 chr1 100979614 100979753 -96215679 - RSINE1 SINE B4 -30 135 4 7 1355 198 0 0 0 chr1 100979805 100979827 -96215605 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1355 1791 106 44 0 chr1 100979915 100980188 -96215244 - L1_Mus3 LINE L1 -8 6630 6346 7 1355 683 128 17 0 chr1 100980773 100980890 -96214542 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 7 1355 252 369 0 12 chr1 100980920 100981005 -96214427 + B1F SINE Alu 32 115 -34 7 1355 246 245 0 0 chr1 100981369 100981467 -96213965 + (TA)n Simple_repeat Simple_repeat 1 98 0 7 1355 354 98 0 0 chr1 100981470 100981521 -96213911 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1355 1173 305 28 3 chr1 100981880 100982202 -96213230 + MTE2b LTR MaLR 13 342 -37 7 1355 1090 102 0 0 chr1 100982621 100982768 -96212664 + B1_Mus1 SINE Alu 2 148 0 7 1355 645 262 5 80 chr1 100983034 100983246 -96212186 + B3A SINE B2 1 196 -2 7 1355 211 133 43 22 chr1 100983477 100983523 -96211909 + T-rich Low_complexity Low_complexity 1 47 0 7 1355 343 315 28 9 chr1 100983540 100983649 -96211783 - ID_B1 SINE B4 -2 222 112 7 1355 212 341 0 68 chr1 100983631 100983719 -96211713 - B4 SINE B4 -207 85 4 7 1355 207 162 0 0 chr1 100983735 100983772 -96211660 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7 1355 327 311 28 0 chr1 100983777 100983883 -96211549 - PB1D10 SINE Alu -8 109 1 7 1355 1049 137 0 0 chr1 100983883 100984044 -96211388 + Lx3A LINE L1 6366 6526 -455 7 1355 258 32 0 0 chr1 100984244 100984275 -96211157 + (TAA)n Simple_repeat Simple_repeat 1 31 0 7 1355 344 344 76 18 chr1 100984732 100985075 -96210357 + L1M4 LINE L1 3406 3768 -2378 7 1355 5140 236 43 11 chr1 100985343 100986921 -96208511 - Lx2B LINE L1 -4 6996 5368 7 1355 1014 121 0 0 chr1 100986922 100987079 -96208353 + (TTTC)n Simple_repeat Simple_repeat 4 160 0 7 1355 384 77 0 0 chr1 100987079 100987131 -96208301 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 7 1355 23 0 0 0 chr1 100987148 100987171 -96208261 + AT_rich Low_complexity Low_complexity 1 23 0 7 1355 6723 108 5 3 chr1 100987171 100988544 -96206888 - L1_Mus2 LINE L1 0 6566 5190 7 1355 936 109 0 0 chr1 100988539 100988676 -96206756 - L1_Mus2 LINE L1 -1754 4129 3993 7 1355 4804 79 0 2 chr1 100988689 100989332 -96206100 + L1_Mm LINE L1 4477 5118 -765 7 1355 7602 181 43 61 chr1 100989329 100991732 -96203700 - L1_Mus2 LINE L1 -3410 2473 219 7 1355 234 0 0 0 chr1 100991748 100991774 -96203658 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1355 843 168 80 42 chr1 100991774 100991875 -96203557 - L1_Mur2 LINE L1 -542 5335 5242 7 1355 324 0 0 0 chr1 100991875 100991911 -96203521 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1355 843 168 80 42 chr1 100991911 100992021 -96203411 - L1_Mur2 LINE L1 -636 5241 5117 7 1355 210 71 0 0 chr1 100992021 100992049 -96203383 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1355 6597 182 60 35 chr1 100992289 100993830 -96201602 - L1_Mur2 LINE L1 -757 5120 3541 7 1355 5422 149 18 24 chr1 100994359 100995419 -96200013 + L1_Mur2 LINE L1 2083 3136 -2741 7 1355 310 263 132 15 chr1 100995661 100995858 -96199574 + L1M4 LINE L1 4475 4694 -1452 7 1355 614 284 126 0 chr1 100996068 100996251 -96199181 + MTEa LTR MaLR 135 340 -39 7 1355 3402 23 5 0 chr1 100996253 100996647 -96198785 + MTA_Mm LTR MaLR 1 396 0 7 1355 8989 31 14 1 chr1 100996647 100997731 -96197701 + MTA_Mm-int LTR MaLR 1 1098 0 7 1355 3352 28 5 0 chr1 100997731 100998125 -96197307 + MTA_Mm LTR MaLR 1 396 0 7 1355 292 325 79 112 chr1 100998270 100998485 -96196947 + B4A SINE B4 2 209 -83 7 1355 285 297 124 43 chr1 100998824 100999123 -96196309 + L1M4 LINE L1 5325 5647 -527 7 1355 507 379 116 8 chr1 100999209 100999467 -96195965 - B4A SINE B4 -4 288 3 7 1355 3516 138 6 8 chr1 100999467 101000000 -96195432 + Lx2 LINE L1 6268 6799 -198 7 1355 1097 171 16 0 chr1 101000000 101000193 -96195239 + Lx2 LINE L1 6800 6995 -2 1 1355 461 305 26 26 chr1 101000237 101000392 -96195040 - B3 SINE B2 0 216 62 2 1355 603 309 85 10 chr1 101000625 101000932 -96194500 + L1MB7 LINE L1 5802 6131 -53 3 1355 210 314 97 24 chr1 101001002 101001126 -96194306 - MIR SINE MIR -45 217 85 4 1355 194 0 39 0 chr1 101001330 101001356 -96194076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1355 277 339 84 8 chr1 101001404 101001535 -96193897 - RMER15 LTR ERVL 0 575 435 6 1355 7474 204 14 61 chr1 101001636 101002774 -96192658 + L1_Mur2 LINE L1 1858 3000 -2877 7 1355 5981 33 22 4 chr1 101002774 101003504 -96191928 + L1Md_F3 LINE L1 5828 6570 -14 8 1355 7474 204 14 61 chr1 101003504 101004286 -96191146 + L1_Mur2 LINE L1 3001 3687 -2190 7 1355 2150 102 9 9 chr1 101004291 101004617 -96190815 - IAPEY3_LTR LTR ERVK -6 326 1 9 1355 4192 195 20 3 chr1 101004617 101005504 -96189928 + L1_Mur2 LINE L1 3683 4584 -1293 7 1355 13806 136 69 43 chr1 101005554 101009174 -96186258 - L1Md_F2 LINE L1 -14 6568 2831 1 1355 387 60 0 0 chr1 101009174 101009224 -96186208 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 1355 13806 158 95 54 chr1 101009224 101009883 -96185549 - L1Md_F2 LINE L1 -3053 2830 2155 1 1355 6148 96 1 6 chr1 101009876 101010760 -96184672 + L1_Mm LINE L1 2773 3652 -2231 1 1355 518 328 103 48 chr1 101010806 101011078 -96184354 - B4 SINE B4 0 292 6 1 1355 7579 96 4 50 chr1 101011093 101012362 -96183070 - L1_Mus1 LINE L1 0 6567 5292 1 1355 1850 86 3 53 chr1 101012362 101012644 -96182788 - L1Md_F2 LINE L1 -11 6571 6304 1 1355 3782 187 5 215 chr1 101012644 101013397 -96182035 - L1_Mus1 LINE L1 -586 5291 4817 1 1355 215 293 0 0 chr1 101013699 101013774 -96181658 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1 1355 630 60 0 0 chr1 101013775 101013858 -96181574 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1355 6259 231 61 19 chr1 101013858 101015910 -96179522 + Lx6 LINE L1 4263 6407 -1053 1 1355 382 339 92 0 chr1 101015910 101016105 -96179327 - B3 SINE B2 -1 215 3 1 1355 2799 116 17 36 chr1 101016155 101016628 -96178804 - L1_Mus4 LINE L1 -4 6632 6169 2 1355 530 293 27 16 chr1 101017199 101017383 -96178049 - MTE2a LTR MaLR 0 379 194 2 1355 387 132 0 0 chr1 101017404 101017472 -96177960 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1355 320 350 120 0 chr1 101017504 101017621 -96177811 - MTE2a LTR MaLR -239 140 10 2 1355 209 30 61 0 chr1 101017887 101017920 -96177512 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1355 436 317 112 26 chr1 101018263 101018541 -96176891 + B4 SINE B4 9 276 -16 2 1355 528 322 7 40 chr1 101019925 101020074 -96175358 - ID_B1 SINE B4 -12 212 69 2 1355 285 29 0 0 chr1 101020271 101020305 -96175127 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 2 1355 222 182 36 0 chr1 101020307 101020362 -96175070 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2 1355 2229 88 85 0 chr1 101022028 101022347 -96173085 - L1_Mus4 LINE L1 -279 6357 6012 2 1355 868 114 0 16 chr1 101022347 101022472 -96172960 + Lx LINE L1 6350 6472 -182 2 1355 1941 240 39 56 chr1 101022900 101022975 -96172457 + RMER20A LTR ERVK 1 91 -425 3 1355 2680 40 61 0 chr1 101022975 101023301 -96172131 - ORR1A1 LTR MaLR 0 346 1 3 1355 1941 240 39 56 chr1 101023301 101023711 -96171721 + RMER20A LTR ERVK 92 478 -38 3 1355 336 312 56 0 chr1 101023746 101023871 -96171561 + MLT1D LTR MaLR 305 436 -69 3 1355 1334 192 101 0 chr1 101023914 101024211 -96171221 - Lx2A1 LINE L1 0 7008 6682 3 1355 243 127 125 18 chr1 101024196 101024252 -96171180 + Lx2B LINE L1 6620 6681 -319 3 1355 266 346 0 116 chr1 101024574 101024695 -96170737 + ID_B1 SINE B4 76 182 -42 3 1355 5182 120 46 0 chr1 101024696 101025202 -96170230 - Lx LINE L1 -255 6399 5889 3 1355 356 40 0 20 chr1 101025202 101025253 -96170179 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1355 5182 137 37 0 chr1 101025253 101025787 -96169645 - Lx LINE L1 -766 5888 5316 3 1355 3151 16 2 82 chr1 101025787 101026211 -96169221 + RLTR10 LTR ERVK 1 390 0 3 1355 4326 45 1 2 chr1 101026221 101027107 -96168325 + RLTR10-int LTR ERVK 41 998 -989 3 1355 376 238 54 31 chr1 101027171 101027301 -96168131 + RLTR10-int LTR ERVK 1462 1594 -5987 3 1355 8655 25 2 1 chr1 101027383 101028377 -96167055 + RLTR10-int LTR ERVK 990 1984 -3 3 1355 3096 23 2 82 chr1 101028379 101028803 -96166629 + RLTR10 LTR ERVK 1 390 0 3 1355 2502 225 0 9 chr1 101028803 101029372 -96166060 - L1_Mur2 LINE L1 -562 5315 4752 4 1355 33 25 0 0 chr1 101029774 101029814 -96165618 + AT_rich Low_complexity Low_complexity 1 40 0 4 1355 593 267 25 25 chr1 101029963 101030233 -96165199 + Lx4B LINE L1 6691 7054 -4 4 1355 357 62 0 0 chr1 101030380 101030428 -96165004 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1355 276 247 0 0 chr1 101030429 101030502 -96164930 + GA-rich Low_complexity Low_complexity 2 74 0 4 1355 388 221 10 59 chr1 101030587 101030688 -96164744 + RLTR11A LTR ERVK 7 102 -426 4 1355 244 246 124 25 chr1 101030699 101030820 -96164612 + RLTR11A LTR ERVK 153 285 -243 4 1355 1184 171 75 4 chr1 101030925 101031165 -96164267 + RLTR11A LTR ERVK 272 528 0 4 1355 371 113 127 0 chr1 101031166 101031237 -96164195 - B3A SINE B2 -118 80 1 4 1355 1289 69 0 0 chr1 101032045 101032219 -96163213 + L1Md_T LINE L1 6409 6582 0 4 1355 22 0 0 0 chr1 101032378 101032400 -96163032 + AT_rich Low_complexity Low_complexity 1 22 0 4 1355 23 0 0 0 chr1 101032608 101032631 -96162801 + AT_rich Low_complexity Low_complexity 1 23 0 4 1355 274 312 21 41 chr1 101032827 101032924 -96162508 + B4A SINE B4 2 96 -196 5 1355 1359 271 15 3 chr1 101033269 101033606 -96161826 + Lx6 LINE L1 6991 7331 -129 5 1355 663 326 19 15 chr1 101034641 101034872 -96160560 - B4 SINE B4 -48 244 8 5 1355 1498 265 36 34 chr1 101035537 101036043 -96159389 + RLTR20B1 LTR ERVK 1 563 0 5 1355 416 312 89 11 chr1 101036429 101036620 -96158812 - B3 SINE B2 -8 208 3 5 1355 357 364 42 8 chr1 101036760 101036879 -96158553 + RSINE1 SINE B4 41 163 -2 5 1355 270 327 62 44 chr1 101037225 101037385 -96158047 - RSINE1 SINE B4 0 165 3 5 1355 1577 236 38 12 chr1 101037467 101037810 -96157622 - ORR1C1 LTR MaLR 0 378 27 5 1355 5422 215 71 2 chr1 101037949 101038542 -96156890 - L1_Mur1 LINE L1 -3159 2727 2059 5 1355 396 0 0 0 chr1 101038542 101038586 -96156846 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1355 5422 215 71 2 chr1 101038586 101039388 -96156044 - L1_Mur1 LINE L1 -3828 2058 1236 5 1355 1216 68 0 0 chr1 101039404 101039585 -96155847 - L1Md_T LINE L1 0 6582 6413 6 1355 7830 26 0 0 chr1 101039585 101041052 -96154380 + L1Md_T LINE L1 4974 6440 -142 6 1355 1546 225 35 15 chr1 101041052 101041449 -96153983 - L1_Mur1 LINE L1 -5714 1270 866 5 1355 584 322 0 7 chr1 101041717 101041861 -96153571 - B3A SINE B2 -48 150 8 6 1355 316 270 27 0 chr1 101042068 101042142 -96153290 - RLTR14 LTR ERV1 -306 76 1 6 1355 23 86 0 0 chr1 101042206 101042264 -96153168 + AT_rich Low_complexity Low_complexity 1 58 0 6 1355 216 0 0 0 chr1 101042282 101042306 -96153126 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1355 1205 226 112 23 chr1 101042905 101043212 -96152220 + ORR1B1 LTR MaLR 1 338 -56 6 1355 2399 112 8 3 chr1 101043212 101043569 -96151863 - L1_Mus3 LINE L1 -6 6632 6274 6 1355 1205 226 112 23 chr1 101043569 101043610 -96151822 + ORR1B1 LTR MaLR 339 379 -15 6 1355 897 304 41 3 chr1 101043966 101044256 -96151176 + MTE2b LTR MaLR 21 321 -58 6 1355 1488 203 6 66 chr1 101044266 101044614 -96150818 - ORR1A4 LTR MaLR 0 329 3 6 1355 565 291 127 6 chr1 101044620 101044793 -96150639 + B3 SINE B2 8 201 -15 6 1355 1294 51 11 6 chr1 101044793 101044972 -96150460 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1355 318 106 0 0 chr1 101044973 101045020 -96150412 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1355 21 71 0 0 chr1 101045162 101045204 -96150228 + AT_rich Low_complexity Low_complexity 1 42 0 7 1355 1518 91 0 9 chr1 101045983 101046204 -96149228 + L1Md_F2 LINE L1 6352 6570 -12 7 1355 345 133 0 0 chr1 101046237 101046312 -96149120 + (A)n Simple_repeat Simple_repeat 1 75 0 7 1355 260 333 12 0 chr1 101046312 101046393 -96149039 - Lx8 LINE L1 -251 7222 7141 7 1355 501 359 0 13 chr1 101047193 101047348 -96148084 + RSINE1 SINE B4 13 165 0 7 1355 228 271 178 15 chr1 101047294 101047429 -96148003 - RMER12 LTR ERVK -446 876 720 7 1355 370 403 36 4 chr1 101047711 101047990 -96147442 - B4A SINE B4 -4 288 1 7 1355 221 0 0 33 chr1 101048879 101048909 -96146523 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1355 614 171 0 9 chr1 101049397 101049503 -96145929 - B2_Mm2 SINE B2 -88 107 3 8 1355 649 110 37 0 chr1 101049651 101049787 -96145645 + (TCTA)n Simple_repeat Simple_repeat 1 141 0 8 1355 667 224 7 14 chr1 101049855 101050000 -96145432 + ORR1D1 LTR MaLR 231 374 0 8 1355 435 261 38 9 chr1 101050357 101050501 -96144931 + ORR1C1 LTR MaLR 168 325 -45 8 1355 235 239 113 0 chr1 101050461 101050532 -96144900 - ORR1B2 LTR MaLR -237 130 52 8 1355 397 257 43 21 chr1 101051026 101051213 -96144219 - L1MCa LINE L1 -4618 1890 1700 8 1355 306 0 0 0 chr1 101051779 101051813 -96143619 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 8 1355 3112 71 2 5 chr1 101051892 101052289 -96143143 + MTA_Mm LTR MaLR 1 396 0 8 1355 8293 70 6 1 chr1 101052289 101053382 -96142050 + MTA_Mm-int LTR MaLR 1 1098 0 8 1355 2970 77 13 5 chr1 101053424 101053817 -96141615 + MTA_Mm LTR MaLR 1 396 0 8 1355 291 54 0 0 chr1 101054254 101054291 -96141141 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1355 21 0 0 0 chr1 101054574 101054595 -96140837 + AT_rich Low_complexity Low_complexity 1 21 0 8 1355 264 261 21 11 chr1 101054790 101054883 -96140549 + T-rich Low_complexity Low_complexity 3 96 0 9 1355 601 305 119 6 chr1 101055326 101055662 -96139770 - ORR1D1 LTR MaLR 0 374 1 9 1355 325 301 109 71 chr1 101055672 101056040 -96139392 + L1M4b LINE L1 2976 3357 -3977 9 1355 25 0 0 0 chr1 101056134 101056159 -96139273 + AT_rich Low_complexity Low_complexity 1 25 0 9 169 283 152 63 16 chr1 101056404 101056531 -96138901 + (TCTG)n Simple_repeat Simple_repeat 4 136 0 9 1356 756 110 9 0 chr1 101056669 101056778 -96138654 + B1_Mus1 SINE Alu 2 111 -37 9 1356 30 0 0 0 chr1 101056778 101056808 -96138624 + AT_rich Low_complexity Low_complexity 1 30 0 9 1356 2634 232 74 63 chr1 101057886 101057942 -96137490 - RMER19B LTR ERVK 0 902 849 9 1356 2919 93 9 5 chr1 101057942 101058361 -96137071 - BGLII LTR ERVK 0 421 1 9 1356 2634 232 74 63 chr1 101058361 101059018 -96136414 - RMER19B LTR ERVK -54 848 181 9 1356 863 246 91 10 chr1 101059036 101059327 -96136105 - RLTR33 LTR ERVK -108 570 219 9 1356 21 36 0 0 chr1 101060480 101060508 -96134924 + AT_rich Low_complexity Low_complexity 1 28 0 1 1356 796 262 90 16 chr1 101060528 101060772 -96134660 + RMER10B LTR ERVL 1 262 -136 1 1356 371 311 47 88 chr1 101060749 101060964 -96134468 + RMER10B LTR ERVL 193 398 0 1 1356 505 368 65 17 chr1 101061402 101061692 -96133740 + MLT2B3 LTR ERVL 186 489 -65 1 1356 516 16 0 0 chr1 101061700 101061761 -96133671 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1356 424 162 331 33 chr1 101061801 101061922 -96133510 + ORR1C1 LTR MaLR 1 157 -221 1 1356 1094 83 14 0 chr1 101061922 101062067 -96133365 + B1_Mm SINE Alu 1 147 0 1 1356 398 66 36 54 chr1 101062067 101062179 -96133253 + A-rich Low_complexity Low_complexity 2 111 0 1 1356 674 239 58 0 chr1 101062179 101062334 -96133098 + ORR1C1 LTR MaLR 143 306 -72 1 1356 285 328 42 0 chr1 101062547 101062666 -96132766 + RMER15 LTR ERVL 447 570 -5 1 1356 834 193 0 0 chr1 101063055 101063231 -96132201 + CT-rich Low_complexity Low_complexity 3 178 0 1 1356 21 57 0 0 chr1 101063450 101063485 -96131947 + AT_rich Low_complexity Low_complexity 1 35 0 1 1356 210 267 34 34 chr1 101063575 101063664 -96131768 + GA-rich Low_complexity Low_complexity 4 92 0 1 1356 242 333 61 12 chr1 101063827 101063909 -96131523 - ID_B1 SINE B4 -13 211 126 1 1356 180 125 0 0 chr1 101064180 101064212 -96131220 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1356 340 318 86 86 chr1 101064674 101064836 -96130596 + B3A SINE B2 18 179 -19 1 1356 249 342 38 62 chr1 101064956 101065165 -96130267 + L1MB4 LINE L1 5923 6126 -54 1 1356 420 287 88 2 chr1 101065177 101065331 -96130101 + B3A SINE B2 8 172 -44 1 1356 222 163 41 0 chr1 101065375 101065424 -96130008 + T-rich Low_complexity Low_complexity 5 55 0 1 1356 341 279 23 11 chr1 101065746 101065833 -96129599 + RSINE1 SINE B4 53 140 -25 1 1356 432 0 0 0 chr1 101065838 101065886 -96129546 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1356 360 0 0 0 chr1 101065886 101065925 -96129507 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1356 550 276 101 5 chr1 101066039 101066264 -96129168 + Lx4B LINE L1 6724 7050 -8 1 1356 377 244 105 41 chr1 101066575 101066800 -96128632 - Lx7 LINE L1 -11 5869 5611 1 1356 444 37 0 0 chr1 101067131 101067185 -96128247 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1356 746 327 57 62 chr1 101067531 101067883 -96127549 + ORR1E LTR MaLR 4 353 -6 1 1356 592 341 16 26 chr1 101067957 101068147 -96127285 - ID_B1 SINE B4 -2 222 35 1 1356 641 293 29 43 chr1 101068198 101068287 -96127145 + B3 SINE B2 2 94 -122 1 1356 4915 137 11 89 chr1 101068287 101069264 -96126168 - RLTR13D6 LTR ERVK 0 902 2 1 1356 641 293 29 43 chr1 101069264 101069381 -96126051 + B3 SINE B2 95 205 -11 1 1356 311 222 31 72 chr1 101070242 101070339 -96125093 - RMER12 LTR ERVK 0 1322 1230 1 1356 920 256 181 45 chr1 101070662 101070884 -96124548 - RMER12 LTR ERVK -233 1089 836 1 1356 387 119 0 0 chr1 101070884 101070951 -96124481 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1356 920 256 181 45 chr1 101070951 101071169 -96124263 - RMER12 LTR ERVK -487 835 590 1 1356 1505 188 140 42 chr1 101071176 101071604 -96123828 + RMER16 LTR ERVK 64 533 0 1 1356 955 178 5 26 chr1 101071604 101071793 -96123639 - RMER12 LTR ERVK -727 595 411 1 1356 411 397 80 25 chr1 101071848 101071933 -96123499 + B4A SINE B4 1 84 -208 1 1356 351 44 0 0 chr1 101071933 101071978 -96123454 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1356 411 397 80 25 chr1 101071978 101072166 -96123266 + B4A SINE B4 85 288 -4 1 1356 432 0 0 0 chr1 101072175 101072223 -96123209 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1356 279 0 0 0 chr1 101072223 101072253 -96123179 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1356 22 0 0 0 chr1 101072349 101072371 -96123061 + AT_rich Low_complexity Low_complexity 1 22 0 1 1356 13967 126 17 47 chr1 101072378 101073394 -96122038 + L1VL4 LINE L1 551 1541 -2373 1 1356 2166 165 12 10 chr1 101073394 101073804 -96121628 + Lx LINE L1 6237 6647 -7 1 1356 13967 137 29 25 chr1 101073804 101076164 -96119268 + L1VL4 LINE L1 1542 3923 -1924 1 1356 3210 93 32 42 chr1 101076164 101076210 -96119222 + RLTR13C1 LTR ERVK 485 533 -450 1 1356 1933 151 19 81 chr1 101076210 101076629 -96118803 + RLTR9C LTR ERVK 1 393 0 1 1356 3210 93 32 42 chr1 101076629 101077084 -96118348 + RLTR13C1 LTR ERVK 534 981 -2 1 1356 1639 224 127 23 chr1 101077100 101077534 -96117898 + ETnERV2-int LTR ERVK 1 479 -6927 1 1356 288 112 37 12 chr1 101077546 101077627 -96117805 + (CAAA)n Simple_repeat Simple_repeat 4 86 0 1 1356 2210 181 46 28 chr1 101077630 101078063 -96117369 + ETnERV2-int LTR ERVK 494 934 -6472 1 1356 225 380 54 81 chr1 101078065 101078214 -96117218 + LTR33B LTR ERVL 41 185 -318 1 1356 442 163 20 0 chr1 101078214 101078312 -96117120 + GA-rich Low_complexity Low_complexity 3 102 0 1 1356 4439 150 41 34 chr1 101078312 101079417 -96116015 + ETnERV3-int LTR ERVK 1285 2559 -3249 1 1356 1488 123 78 31 chr1 101079452 101079745 -96115687 + ETnERV3-int LTR ERVK 2875 3181 -4225 1 1356 38416 6 0 0 chr1 101079777 101085162 -96110270 + L1Md_A LINE L1 201 5586 -297 1 1356 8996 3 0 0 chr1 101085162 101086183 -96109249 + L1Md_A LINE L1 5587 6582 0 1 1356 24 0 0 0 chr1 101086890 101086914 -96108518 + AT_rich Low_complexity Low_complexity 1 24 0 1 1356 1928 112 10 17 chr1 101086944 101087244 -96108188 + ETnERV3-int LTR ERVK 3168 3465 -3941 1 1356 1839 220 14 36 chr1 101087247 101087686 -96107746 + ETnERV3-int LTR ERVK 4397 4825 -983 1 1356 486 0 0 0 chr1 101087738 101087792 -96107640 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1356 4589 183 18 33 chr1 101087818 101088757 -96106675 + ETnERV3-int LTR ERVK 4855 5779 -29 1 1356 6890 94 19 14 chr1 101088765 101089743 -96105689 + RLTR13C1 LTR ERVK 1 983 0 1 1356 3129 206 98 62 chr1 101090182 101091133 -96104299 + RLTR25A LTR ERVK 1 1028 0 1 1356 444 357 22 11 chr1 101091343 101091527 -96103905 - B3A SINE B2 -8 190 5 1 1356 2817 113 2 12 chr1 101091589 101092000 -96103432 - MTB_Mm LTR MaLR 0 407 1 1 1356 431 305 23 77 chr1 101092092 101092312 -96103120 + B3 SINE B2 2 209 -7 1 1356 302 246 108 40 chr1 101093080 101093228 -96102204 - MIRc SINE MIR -10 258 101 1 1356 513 0 0 0 chr1 101093670 101093727 -96101705 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1356 957 322 146 39 chr1 101093830 101094556 -96100876 - Lx9 LINE L1 -269 7375 6595 1 1356 579 343 87 0 chr1 101094646 101094888 -96100544 + B4A SINE B4 16 278 -14 1 1356 1154 270 63 76 chr1 101094907 101095617 -96099815 + L1_Rod LINE L1 3910 4610 -1237 1 1356 566 28 0 0 chr1 101096420 101096491 -96098941 + MT-int LTR MaLR 700 770 -328 1 1356 889 47 16 0 chr1 101096482 101096611 -96098821 + MT-int LTR MaLR 895 1025 -73 1 1356 1765 19 0 0 chr1 101096611 101096822 -96098610 - MT-int LTR MaLR -190 908 698 1 1356 198 0 0 0 chr1 101097272 101097294 -96098138 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 1356 2980 114 68 0 chr1 101097296 101097768 -96097664 - L1_Mus3 LINE L1 -11 6627 6124 1 1356 456 361 27 11 chr1 101099403 101099554 -96095878 + B3 SINE B2 25 180 -36 1 1356 327 25 0 0 chr1 101099554 101099594 -96095838 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1356 456 361 27 11 chr1 101099594 101099627 -96095805 + B3 SINE B2 181 211 -5 1 1356 35995 21 13 20 chr1 101099638 101104311 -96091121 + L1Md_A LINE L1 233 4927 -956 1 1356 228 183 46 77 chr1 101104311 101104376 -96091056 - RMER20A LTR ERVK -268 248 186 1 1356 35995 21 13 20 chr1 101104376 101105030 -96090402 + L1Md_A LINE L1 4928 5586 -297 1 1356 8220 41 1 0 chr1 101105031 101106023 -96089409 + L1Md_A LINE L1 5588 6580 -2 1 1356 505 367 25 18 chr1 101107300 101107580 -96087852 - RMER15 LTR ERVL -14 561 280 1 1356 252 234 29 59 chr1 101107581 101107649 -96087783 - RMER15 LTR ERVL -422 153 88 1 1356 405 0 0 0 chr1 101107662 101107707 -96087725 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1356 478 54 13 13 chr1 101107707 101107782 -96087650 + (TTTTC)n Simple_repeat Simple_repeat 4 78 0 1 1356 582 335 19 13 chr1 101108212 101108369 -96087063 + RSINE1 SINE B4 6 163 -2 1 1356 523 335 76 5 chr1 101108544 101108742 -96086690 + B4A SINE B4 27 238 -54 1 1356 198 62 20 59 chr1 101109404 101109455 -96085977 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 1 1356 2221 224 2 76 chr1 101109469 101109589 -96085843 - Lx2B LINE L1 0 7000 6902 1 1356 180 0 0 0 chr1 101109589 101109609 -96085823 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1356 1002 59 66 0 chr1 101109609 101109745 -96085687 - B1_Mus1 SINE Alu -2 146 2 1 1356 2221 224 2 76 chr1 101109745 101110160 -96085272 - Lx2B LINE L1 -99 6901 6505 1 1356 748 153 92 13 chr1 101110163 101110315 -96085117 + Lx2B LINE L1 6344 6507 -493 1 1356 850 218 13 130 chr1 101110459 101110844 -96084588 + Lx7 LINE L1 7357 7696 0 1 1356 745 273 24 5 chr1 101111006 101111212 -96084220 - B3 SINE B2 -2 214 5 1 1356 1127 112 22 11 chr1 101111432 101111613 -96083819 + B2_Mm2 SINE B2 3 185 -10 1 1356 424 313 7 30 chr1 101111831 101111966 -96083466 + B3A SINE B2 7 138 -60 1 1356 513 32 0 0 chr1 101112000 101112063 -96083369 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1356 373 259 114 39 chr1 101112404 101112610 -96082822 + MTE2a LTR MaLR 156 377 -2 1 1356 21 36 0 0 chr1 101113052 101113080 -96082352 + AT_rich Low_complexity Low_complexity 1 28 0 1 1356 705 88 0 0 chr1 101113436 101113538 -96081894 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 1356 297 183 0 0 chr1 101113538 101113598 -96081834 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1 1356 272 314 15 99 chr1 101114203 101114334 -96081098 - B4A SINE B4 -120 172 53 1 1356 378 91 0 0 chr1 101114374 101114429 -96081003 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1356 2705 215 61 21 chr1 101114876 101115550 -96079882 + RLTR40 LTR ERVK 36 733 -84 1 1356 356 40 0 20 chr1 101115550 101115601 -96079831 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1356 246 62 0 0 chr1 101115601 101115632 -96079800 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1356 2705 215 61 21 chr1 101115632 101115674 -96079758 + RLTR40 LTR ERVK 734 781 -36 1 1356 3594 173 79 31 chr1 101115679 101116222 -96079210 - RMER17D LTR ERVK 0 889 309 1 1356 1183 50 6 6 chr1 101116222 101116382 -96079050 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 1 1356 3594 173 79 31 chr1 101116382 101116686 -96078746 - RMER17D LTR ERVK -581 308 2 1 1356 3425 85 8 11 chr1 101116686 101117162 -96078270 + MT2C_Mm LTR ERVL 1 475 0 1 1356 344 358 28 17 chr1 101117360 101117536 -96077896 - RMER15 LTR ERVL -45 530 353 1 1356 243 0 0 0 chr1 101118436 101118463 -96076969 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1356 21 0 0 0 chr1 101118954 101118975 -96076457 + AT_rich Low_complexity Low_complexity 1 21 0 1 1356 651 324 6 23 chr1 101119613 101119787 -96075645 + B4A SINE B4 9 179 -113 1 1356 504 0 0 0 chr1 101120089 101120145 -96075287 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1356 4220 205 62 4 chr1 101120199 101121104 -96074328 - Lx3C LINE L1 -11 6965 6009 1 1356 7946 44 15 0 chr1 101121098 101122468 -96072964 - L1Md_F2 LINE L1 0 6582 5192 1 1356 8208 78 1 0 chr1 101122467 101123562 -96071870 + L1Md_F2 LINE L1 4083 5178 -705 1 1356 8198 179 15 88 chr1 101123560 101124321 -96071111 - Lx3C LINE L1 -974 6026 5283 1 1356 465 50 0 0 chr1 101124321 101124381 -96071051 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 1 1356 8198 192 19 118 chr1 101124381 101124983 -96070449 - Lx3C LINE L1 -595 5282 4786 1 1356 216 0 0 0 chr1 101124983 101125007 -96070425 + (TCC)n Simple_repeat Simple_repeat 2 25 0 1 1356 8198 192 19 118 chr1 101125007 101126073 -96069359 - Lx3C LINE L1 -1092 4785 3813 1 1356 434 176 0 23 chr1 101126624 101126711 -96068721 - RLTR9A LTR ERVK -2 366 282 1 1356 2784 187 21 62 chr1 101126715 101127296 -96068136 - Lx2B LINE L1 -72 6928 6372 2 1356 1364 264 52 12 chr1 101127878 101128204 -96067228 + ORR1B1 LTR MaLR 41 379 -15 2 1356 23 54 0 0 chr1 101128317 101128354 -96067078 + AT_rich Low_complexity Low_complexity 1 37 0 2 1356 566 319 69 80 chr1 101128356 101128645 -96066787 - ORR1E LTR MaLR -65 294 9 2 1356 40 37 0 0 chr1 101128957 101129011 -96066421 + AT_rich Low_complexity Low_complexity 1 54 0 2 1356 1352 234 60 28 chr1 101129237 101129601 -96065831 - RMER1B Other Other -9 1057 682 2 1356 545 310 31 47 chr1 101129606 101129799 -96065633 - B3A SINE B2 0 198 9 2 1356 330 383 64 45 chr1 101129806 101130181 -96065251 - Tigger6a DNA MER2_type -417 666 285 2 1356 1047 63 114 0 chr1 101130381 101130553 -96064879 + L1_Mus1 LINE L1 6438 6567 0 2 1356 522 324 143 10 chr1 101132000 101132209 -96063223 - B4 SINE B4 -16 276 40 2 1356 371 392 0 39 chr1 101132445 101132575 -96062857 + B3A SINE B2 41 165 -33 2 1356 21 0 0 0 chr1 101132620 101132641 -96062791 + AT_rich Low_complexity Low_complexity 1 21 0 2 1356 306 0 0 0 chr1 101132955 101132989 -96062443 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1356 309 319 181 31 chr1 101133434 101133677 -96061755 - B4A SINE B4 -12 280 2 2 1356 1277 201 0 19 chr1 101134057 101134326 -96061106 + RMER10B LTR ERVL 1 264 -134 2 1356 195 184 0 0 chr1 101134338 101134376 -96061056 + CT-rich Low_complexity Low_complexity 1 38 0 2 1356 838 229 0 85 chr1 101134377 101134601 -96060831 + RMER10B LTR ERVL 194 398 0 2 1356 204 135 27 0 chr1 101134716 101134753 -96060679 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1356 639 248 105 110 chr1 101135163 101135544 -96059888 - MTE2a LTR MaLR 0 379 1 2 1356 304 344 24 71 chr1 101135685 101135854 -96059578 + B3A SINE B2 38 198 0 2 1356 204 97 0 0 chr1 101136029 101136060 -96059372 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1356 24 0 0 0 chr1 101136354 101136378 -96059054 + AT_rich Low_complexity Low_complexity 1 24 0 2 1356 16435 114 6 11 chr1 101136465 101138811 -96056621 - Lx3_Mus LINE L1 0 7009 4664 2 1356 1061 90 0 14 chr1 101138811 101138957 -96056475 + B1_Mus1 SINE Alu 5 148 0 2 1356 16435 114 9 25 chr1 101138957 101140405 -96055027 - Lx3_Mus LINE L1 -1223 4663 3257 2 1356 49 52 0 0 chr1 101140501 101140578 -96054854 + AT_rich Low_complexity Low_complexity 1 77 0 2 1356 5258 95 7 65 chr1 101140585 101141564 -96053868 + L1_Mur1 LINE L1 1054 2041 -3845 2 1356 200 283 19 0 chr1 101141675 101141728 -96053704 - MER5A DNA MER1_type -15 174 121 2 1356 3995 156 9 80 chr1 101142107 101142560 -96052872 - RMER17D2 LTR ERVK 0 809 399 2 1356 797 79 0 9 chr1 101142560 101142675 -96052757 + (GGAGA)n Simple_repeat Simple_repeat 1 114 0 2 1356 3995 156 9 80 chr1 101142675 101143092 -96052340 - RMER17D2 LTR ERVK -411 398 1 2 1356 231 378 20 20 chr1 101143513 101143613 -96051819 + RMER15 LTR ERVL 371 470 -105 2 1356 334 315 188 8 chr1 101144558 101144798 -96050634 - B4A SINE B4 -8 284 2 2 1356 276 77 0 0 chr1 101145335 101145374 -96050058 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1356 593 61 12 0 chr1 101145374 101145455 -96049977 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1356 7405 195 81 13 chr1 101145523 101145992 -96049440 + Lx5 LINE L1 4015 4503 -1374 2 1356 3388 39 0 128 chr1 101145992 101146492 -96048940 + RLTR10C LTR ERVK 1 436 0 2 1356 7405 213 80 14 chr1 101146492 101148861 -96046571 + Lx5 LINE L1 4504 7050 0 2 1356 35930 74 2 1 chr1 101150024 101156190 -96039242 - L1Md_F3 LINE L1 -7 6577 447 2 1356 21 36 0 0 chr1 101156363 101156391 -96039041 + AT_rich Low_complexity Low_complexity 1 28 0 2 1356 188 35 35 0 chr1 101156690 101156719 -96038713 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1356 343 172 0 0 chr1 101156887 101156945 -96038487 - HAL1-3A_ME LINE L1 -826 2032 1975 2 1356 269 217 12 0 chr1 101156945 101157028 -96038404 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1356 200 175 111 0 chr1 101157103 101157166 -96038266 + CT-rich Low_complexity Low_complexity 5 74 0 2 1356 405 0 0 0 chr1 101157443 101157488 -96037944 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1356 225 341 84 28 chr1 101158655 101158797 -96036635 - MLT1D LTR MaLR -37 468 319 2 1356 270 337 22 0 chr1 101159052 101159141 -96036291 + B3A SINE B2 3 93 -105 2 1356 29901 6 0 0 chr1 101159145 101163234 -96032198 - L1Md_A LINE L1 0 6582 2494 2 1356 5079 54 16 0 chr1 101163254 101163901 -96031531 - L1Md_F3 LINE L1 -14 6570 5914 2 1356 318 311 9 46 chr1 101163938 101164046 -96031386 + B3 SINE B2 107 210 -6 2 1356 306 251 16 82 chr1 101164141 101164270 -96031162 + RLTR20B3 LTR ERVK 1 133 -395 2 1356 296 302 49 49 chr1 101164693 101164999 -96030433 + L1MC LINE L1 2341 2646 -3500 2 1356 201 158 0 0 chr1 101165077 101165115 -96030317 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1356 21 36 0 0 chr1 101165745 101165773 -96029659 + AT_rich Low_complexity Low_complexity 1 28 0 2 1356 401 293 51 36 chr1 101165792 101165930 -96029502 - RSINE1 SINE B4 0 165 26 2 1356 326 189 36 0 chr1 101165976 101166087 -96029345 + (TG)n Simple_repeat Simple_repeat 1 115 0 2 1356 642 341 118 0 chr1 101166126 101166372 -96029060 - B4A SINE B4 -8 284 10 2 1356 597 249 43 29 chr1 101166475 101166682 -96028750 - B3 SINE B2 -2 214 5 2 1356 338 346 122 44 chr1 101166685 101166997 -96028435 + MT2A LTR ERVL 1 340 -193 2 1356 5263 33 5 6 chr1 101166997 101167636 -96027796 - L1Md_F3 LINE L1 -16 6568 5931 2 1356 338 346 122 44 chr1 101167636 101167667 -96027765 + MT2A LTR ERVL 341 371 -162 2 1356 267 321 24 0 chr1 101167698 101167782 -96027650 + MT2A LTR ERVL 340 425 -108 2 1356 251 180 69 41 chr1 101167786 101167982 -96027450 + (TA)n Simple_repeat Simple_repeat 1 201 0 2 1356 186 136 0 57 chr1 101167998 101168068 -96027364 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2 1356 1630 213 57 40 chr1 101168295 101168754 -96026678 + RLTR20D LTR ERVK 3 568 0 2 1356 2010 143 32 9 chr1 101169430 101169775 -96025657 + Lx LINE L1 6296 6648 -6 2 1356 23 33 0 0 chr1 101169848 101169878 -96025554 + AT_rich Low_complexity Low_complexity 1 30 0 2 1356 2783 35 0 0 chr1 101170111 101170449 -96024983 + ORR1A0 LTR MaLR 1 338 -8 2 1356 13952 52 10 1 chr1 101170453 101172229 -96023203 + ORR1A0-int LTR MaLR 1 1792 0 2 1356 2968 38 0 0 chr1 101172229 101172575 -96022857 + ORR1A0 LTR MaLR 1 346 0 2 1356 340 54 52 42 chr1 101172922 101173018 -96022414 + (TTTTG)n Simple_repeat Simple_repeat 4 100 0 2 1356 360 299 86 21 chr1 101173040 101173180 -96022252 + MLT2B1 LTR ERVL 413 561 -6 2 1356 238 344 52 67 chr1 101173419 101173553 -96021879 - MLT1A1 LTR MaLR -59 349 218 2 1356 4554 32 2 6 chr1 101174027 101174567 -96020865 - L1Md_F2 LINE L1 -1 6581 6044 2 1356 23 54 0 0 chr1 101174678 101174715 -96020717 + AT_rich Low_complexity Low_complexity 1 37 0 2 1356 577 345 18 51 chr1 101175272 101175489 -96019943 + ID_B1 SINE B4 9 218 -6 2 1356 608 160 8 0 chr1 101175522 101175641 -96019791 + GA-rich Low_complexity Low_complexity 2 121 0 2 1356 23 0 0 0 chr1 101176106 101176129 -96019303 + AT_rich Low_complexity Low_complexity 1 23 0 2 1356 295 164 148 0 chr1 101176640 101176701 -96018731 - RSINE1 SINE B4 -36 129 60 2 1356 3980 235 101 81 chr1 101176863 101178403 -96017029 + Lx5 LINE L1 2457 4027 -1859 2 1356 23 78 0 0 chr1 101178403 101178454 -96016978 + AT_rich Low_complexity Low_complexity 1 51 0 2 1356 4415 78 5 8 chr1 101178859 101179454 -96015978 + L1Md_F2 LINE L1 5980 6572 -10 2 1356 211 312 118 16 chr1 101179646 101179773 -96015659 + MIRc SINE MIR 125 264 -4 2 1356 6147 208 20 163 chr1 101179912 101181035 -96014397 + Lx5 LINE L1 4034 4855 -1022 2 1356 965 82 18 48 chr1 101181035 101181202 -96014230 + L1_Mus3 LINE L1 6474 6635 -3 2 1356 6147 208 20 163 chr1 101181202 101181603 -96013829 + Lx5 LINE L1 4856 5219 -658 2 1356 225 0 0 0 chr1 101181603 101181628 -96013804 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1356 6147 208 20 163 chr1 101181628 101182253 -96013179 + Lx5 LINE L1 5220 5876 -1 2 1356 1808 210 0 8 chr1 101182264 101182619 -96012813 + Lx5 LINE L1 6237 6588 -462 2 1356 1523 262 11 39 chr1 101182682 101183146 -96012286 + Lx4B LINE L1 6604 7054 -4 2 1356 1965 214 73 26 chr1 101183244 101183642 -96011790 + RLTR20B3 LTR ERVK 89 468 -109 2 1356 306 0 0 0 chr1 101183642 101183676 -96011756 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1356 1965 210 75 26 chr1 101183676 101183758 -96011674 + RLTR20B3 LTR ERVK 469 577 0 2 1356 875 331 48 7 chr1 101185397 101185668 -96009764 - B4 SINE B4 -1 291 10 2 1356 708 315 29 44 chr1 101185780 101186052 -96009380 + MTE2a LTR MaLR 97 364 -15 2 1356 330 384 0 0 chr1 101186282 101186394 -96009038 - PB1D10 SINE Alu 0 117 6 2 1356 1374 102 5 0 chr1 101186412 101186609 -96008823 + L1_Mus2 LINE L1 6368 6565 -1 2 1356 1083 76 7 0 chr1 101186922 101187066 -96008366 + B1_Mm SINE Alu 1 145 -2 2 1356 279 0 0 0 chr1 101187066 101187097 -96008335 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1356 650 300 87 52 chr1 101187117 101187169 -96008263 - RLTR22_Mur LTR ERVK -940 382 329 2 1356 2042 62 0 0 chr1 101187169 101187425 -96008007 - L1_Mus1 LINE L1 -1 6566 6311 2 169 899 252 92 37 chr1 101187425 101187591 -96007841 - RLTR22_Mur LTR ERVK -994 328 147 2 1357 405 86 0 0 chr1 101187591 101187649 -96007783 + (TAA)n Simple_repeat Simple_repeat 2 59 0 2 1357 899 221 96 28 chr1 101187649 101187798 -96007634 - RLTR22_Mur LTR ERVK -1702 146 2 2 1357 259 312 98 0 chr1 101187806 101187918 -96007514 - MTD LTR MaLR -279 140 18 2 1357 588 342 45 63 chr1 101188068 101188283 -96007149 + B4A SINE B4 4 217 -75 2 1357 474 18 0 0 chr1 101188283 101188338 -96007094 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1357 588 342 45 63 chr1 101188338 101188409 -96007023 + B4A SINE B4 218 284 -8 2 1357 4998 45 0 0 chr1 101188458 101189065 -96006367 + L1Md_F2 LINE L1 4980 5586 -297 2 1357 7680 48 29 0 chr1 101189065 101190021 -96005411 + L1Md_F2 LINE L1 5587 6570 -12 2 1357 350 57 0 19 chr1 101190793 101190847 -96004585 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 2 1357 284 327 121 30 chr1 101191549 101191814 -96003618 - Lx8 LINE L1 -70 7403 7115 2 1357 8927 8 1 0 chr1 101191844 101193018 -96002414 - L1Md_T LINE L1 0 6582 5484 2 1357 2778 155 25 2 chr1 101194013 101194497 -96000935 - Lx LINE L1 -6 6648 6154 2 1357 1460 187 0 10 chr1 101194505 101194797 -96000635 - L1_Mm LINE L1 -994 4889 4601 2 1357 5706 241 50 2 chr1 101194796 101196132 -95999300 + Lx4B LINE L1 5606 7005 -53 2 1357 1097 73 0 0 chr1 101196884 101197020 -95998412 + B1_Mm SINE Alu 1 136 -11 2 1357 456 19 0 0 chr1 101197025 101197078 -95998354 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 3 1357 304 184 82 16 chr1 101197078 101197149 -95998283 + B4A SINE B4 187 261 -31 3 1357 315 202 7 85 chr1 101197210 101197351 -95998081 + (CATATA)n Simple_repeat Simple_repeat 6 135 0 3 1357 558 355 99 35 chr1 101198141 101198565 -95996867 + MT2A LTR ERVL 10 460 -73 3 1357 181 98 49 0 chr1 101198587 101198628 -95996804 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 3 1357 1698 196 6 9 chr1 101198630 101198960 -95996472 + ORR1A4 LTR MaLR 1 329 0 3 1357 5233 216 10 85 chr1 101198960 101200370 -95995062 + ORR1A4-int LTR MaLR 1 1944 -19 3 1357 639 220 0 14 chr1 101200370 101200513 -95994919 + ORR1A4 LTR MaLR 1 141 -185 3 1357 360 401 23 19 chr1 101200862 101201078 -95994354 - RLTR16 LTR ERVK -265 240 24 3 1357 1104 180 5 0 chr1 101201086 101201280 -95994152 + ORR1A4 LTR MaLR 135 329 0 3 1357 270 403 46 46 chr1 101201561 101201691 -95993741 + ID_B1 SINE B4 2 131 -93 3 1357 741 23 0 0 chr1 101202143 101202230 -95993202 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 3 1357 51 80 0 7 chr1 101202443 101202497 -95992935 + AT_rich Low_complexity Low_complexity 1 54 0 3 1357 1158 48 14 0 chr1 101202497 101202642 -95992790 + B1_Mm SINE Alu 1 147 0 3 1357 51 80 0 7 chr1 101202642 101202726 -95992706 + AT_rich Low_complexity Low_complexity 1 84 0 3 1357 510 316 54 48 chr1 101203436 101203602 -95991830 - B3A SINE B2 -15 183 17 3 1357 351 0 0 0 chr1 101203608 101203647 -95991785 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1357 252 0 0 0 chr1 101203647 101203674 -95991758 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1357 360 0 0 0 chr1 101203674 101203713 -95991719 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1357 188 235 15 0 chr1 101203777 101203845 -95991587 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1357 480 189 53 0 chr1 101204040 101204135 -95991297 + RLTR23 LTR ERV1 1 100 -330 3 1357 366 100 0 0 chr1 101204147 101204207 -95991225 + (A)n Simple_repeat Simple_repeat 1 60 0 3 1357 1164 191 11 113 chr1 101204240 101204523 -95990909 + RLTR23 LTR ERV1 117 370 -60 3 1357 3006 119 0 22 chr1 101204523 101205142 -95990290 - L1VL1 LINE L1 -2211 1487 881 3 1357 488 301 110 97 chr1 101205197 101205353 -95990079 - MTE2a LTR MaLR -30 349 179 3 1357 1380 183 121 62 chr1 101205353 101205708 -95989724 + ORR1C1 LTR MaLR 1 376 -2 3 1357 488 314 106 92 chr1 101205708 101205880 -95989552 - MTE2a LTR MaLR -199 220 46 3 1357 275 270 78 112 chr1 101206212 101206391 -95989041 + RLTR23 LTR ERV1 225 397 -33 3 1357 856 290 77 69 chr1 101206681 101207044 -95988388 + MTE2a LTR MaLR 1 366 -13 3 1357 24 32 0 0 chr1 101207662 101207693 -95987739 + AT_rich Low_complexity Low_complexity 1 31 0 3 1357 7010 62 3 3 chr1 101207853 101208750 -95986682 - L1Md_F3 LINE L1 -14 6570 5674 3 1357 17974 50 1 0 chr1 101208750 101210990 -95984442 + L1Md_F3 LINE L1 3438 5678 -205 3 1357 448 376 39 17 chr1 101211080 101211261 -95984171 + B4A SINE B4 8 192 -100 3 1357 582 54 0 0 chr1 101211569 101211643 -95983789 + (T)n Simple_repeat Simple_repeat 1 74 0 3 1357 1135 82 0 0 chr1 101211643 101211790 -95983642 - B1_Mus2 SINE Alu 0 147 1 3 1357 237 65 0 0 chr1 101211829 101211860 -95983572 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 3 1357 543 231 52 7 chr1 101211863 101211998 -95983434 - B1_Mus1 SINE Alu -4 144 4 3 1357 1747 121 0 4 chr1 101212206 101212463 -95982969 - L1_Mus4 LINE L1 -48 6588 6333 3 1357 3956 92 29 5 chr1 101212451 101213008 -95982424 + L1_Mus4 LINE L1 5764 6333 -303 3 1357 379 221 8 15 chr1 101213080 101213213 -95982219 + (CATA)n Simple_repeat Simple_repeat 4 135 0 3 1357 349 319 90 17 chr1 101214664 101214973 -95980459 + L1M4 LINE L1 5203 5537 -647 3 1357 2518 73 6 0 chr1 101215002 101215343 -95980089 - L1_Mus2 LINE L1 -19 6547 6205 3 1357 4850 87 16 12 chr1 101215697 101216383 -95979049 - L1_Mus4 LINE L1 -21 6615 5927 3 1357 602 180 20 1 chr1 101216383 101216492 -95978940 + B2_Mm2 SINE B2 39 159 -57 3 1357 1994 149 37 37 chr1 101216562 101216945 -95978487 - Lx LINE L1 -6 6648 6266 3 1357 981 155 11 0 chr1 101216946 101217120 -95978312 + L1_Mm LINE L1 5302 5477 -406 3 1357 1073 338 37 19 chr1 101217614 101218133 -95977299 - RodERV21-int LTR ERV1 -193 4798 4271 3 1357 866 368 23 10 chr1 101218299 101218782 -95976650 - RodERV21-int LTR ERV1 -947 4044 3556 3 1357 757 180 14 0 chr1 101218782 101218921 -95976511 + L1_Mm LINE L1 5488 5628 -255 3 1357 2494 206 28 43 chr1 101218998 101219085 -95976347 - RLTR20A LTR ERVK -6 535 451 3 1357 441 0 0 0 chr1 101219085 101219134 -95976298 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1357 2494 206 28 43 chr1 101219134 101219410 -95976022 - RLTR20A LTR ERVK -91 450 183 3 1357 534 31 0 0 chr1 101219410 101219474 -95975958 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1357 2494 206 28 43 chr1 101219474 101219646 -95975786 - RLTR20A LTR ERVK -359 182 7 3 1357 5916 69 15 6 chr1 101220102 101220899 -95974533 - L1Md_F2 LINE L1 0 6582 5779 3 1357 393 337 80 62 chr1 101221027 101221413 -95974019 - L1M4 LINE L1 -3195 2951 2559 3 1357 300 288 82 33 chr1 101221428 101221550 -95973882 - RSINE1 SINE B4 -7 158 31 3 1357 504 270 18 9 chr1 101221806 101221918 -95973514 + B1_Mur1 SINE Alu 35 147 -2 3 1357 299 302 193 12 chr1 101221936 101222107 -95973325 + B3 SINE B2 9 210 -6 3 1357 842 167 45 22 chr1 101222395 101222573 -95972859 - Lx3_Mus LINE L1 -5 7004 6823 3 1357 8240 122 50 15 chr1 101222581 101224555 -95970877 + Lx3_Mus LINE L1 4942 6986 -23 3 1357 195 42 0 0 chr1 101224555 101224579 -95970853 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 3 1357 8033 51 0 1 chr1 101224847 101226131 -95969301 - L1Md_F2 LINE L1 -13 6569 5288 3 1357 309 203 0 17 chr1 101226394 101226454 -95968978 + HAL1-3A_ME LINE L1 1976 2034 -824 3 1357 300 329 56 62 chr1 101226477 101226639 -95968793 + MLT1B LTR MaLR 212 372 -18 3 1357 198 0 0 0 chr1 101226920 101226942 -95968490 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1357 195 42 0 0 chr1 101227190 101227214 -95968218 + (TATG)n Simple_repeat Simple_repeat 3 26 0 3 1357 366 23 0 0 chr1 101227329 101227372 -95968060 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1357 502 389 53 0 chr1 101227373 101227581 -95967851 - B4 SINE B4 -69 223 5 3 1357 431 295 95 85 chr1 101227660 101228113 -95967319 - Lx7 LINE L1 -1871 5825 5354 3 1357 1426 218 30 62 chr1 101228516 101228893 -95966539 - ORR1B1 LTR MaLR 0 394 1 3 1357 1393 208 108 76 chr1 101228893 101229299 -95966133 - ORR1B1-int LTR MaLR 0 1509 1091 3 1357 4652 209 46 26 chr1 101229299 101230754 -95964678 + Lx5 LINE L1 4353 5972 -1078 3 1357 420 152 77 27 chr1 101230754 101230862 -95964570 + ORR1A3 LTR MaLR 2 163 -215 3 1357 1552 272 179 21 chr1 101230940 101231736 -95963696 + Lx5 LINE L1 6125 7045 -5 3 1357 507 295 22 20 chr1 101231775 101232073 -95963359 - L1M2 LINE L1 -778 5365 4999 3 1357 225 294 77 66 chr1 101232274 101232365 -95963067 + FordPrefect DNA Tip100 524 615 -1068 3 1357 373 306 31 18 chr1 101232975 101233138 -95962294 + Lx6 LINE L1 7266 7430 -30 3 1357 401 349 35 56 chr1 101233154 101233439 -95961993 + B4A SINE B4 4 282 -10 3 1357 1151 129 5 20 chr1 101234235 101234432 -95961000 + B2_Mm2 SINE B2 1 194 -1 3 1357 301 296 151 30 chr1 101234643 101234908 -95960524 + L1M2 LINE L1 5413 5709 -582 3 1357 367 308 135 92 chr1 101235262 101235491 -95959941 - B4 SINE B4 -30 262 24 3 1357 34 55 0 0 chr1 101236758 101236813 -95958619 + AT_rich Low_complexity Low_complexity 1 55 0 3 1357 2799 109 20 108 chr1 101236813 101237366 -95958066 - Lx3_Mus LINE L1 -827 6182 5679 3 1357 819 112 0 0 chr1 101237515 101237640 -95957792 + (GGAA)n Simple_repeat Simple_repeat 2 126 0 3 1357 201 208 41 20 chr1 101237640 101237689 -95957743 + G-rich Low_complexity Low_complexity 3 52 0 3 1357 358 183 46 43 chr1 101237690 101238023 -95957409 + GA-rich Low_complexity Low_complexity 1 333 0 3 1357 990 28 10 82 chr1 101238065 101238259 -95957173 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 3 1357 507 280 0 0 chr1 101238259 101238388 -95957044 + GA-rich Low_complexity Low_complexity 13 141 0 3 1357 999 28 11 78 chr1 101238388 101238579 -95956853 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 3 1357 867 102 0 59 chr1 101238579 101238783 -95956649 + A-rich Low_complexity Low_complexity 1 192 0 3 1357 527 274 120 26 chr1 101238783 101238974 -95956458 + MTD LTR MaLR 199 407 -12 3 1357 23 68 0 0 chr1 101239118 101239162 -95956270 + AT_rich Low_complexity Low_complexity 1 44 0 3 1357 1335 325 78 30 chr1 101239164 101239769 -95955663 - L1M2 LINE L1 -869 5274 4642 3 1357 1180 279 14 179 chr1 101239769 101240501 -95954931 + RMER19C LTR ERVK 1 611 0 3 1357 1335 325 78 30 chr1 101240501 101241168 -95954264 - L1M2 LINE L1 -1502 4641 3941 3 1357 2406 194 33 14 chr1 101241263 101241754 -95953678 - RLTR20B2 LTR ERVK -60 500 1 3 1357 708 262 6 6 chr1 101241754 101241923 -95953509 - URR1A DNA MER1_type -57 169 1 3 1357 206 227 0 39 chr1 101241956 101242034 -95953398 + (TTTA)n Simple_repeat Simple_repeat 4 78 0 3 1357 41208 4 0 0 chr1 101242162 101248536 -95946896 - L1Md_A LINE L1 0 6582 208 3 1357 439 374 0 0 chr1 101248664 101248803 -95946629 - B3 SINE B2 -37 179 41 3 1357 302 271 112 50 chr1 101248914 101249093 -95946339 + LTR90B LTR LTR 596 785 -11 3 1357 24 0 0 0 chr1 101249439 101249463 -95945969 + AT_rich Low_complexity Low_complexity 1 24 0 3 1357 730 260 26 15 chr1 101249633 101249828 -95945604 - URR1B DNA MER1_type -28 197 1 3 1357 180 179 0 0 chr1 101249940 101249979 -95945453 + CT-rich Low_complexity Low_complexity 3 41 0 3 1357 412 304 17 25 chr1 101249987 101250105 -95945327 - B1_Mur3 SINE Alu -19 130 14 3 1357 8409 30 0 2 chr1 101250313 101251427 -95944005 - L1Md_T LINE L1 0 6582 5473 3 1357 1577 218 11 14 chr1 101251425 101251783 -95943649 + Lx3C LINE L1 6461 6817 -159 3 1357 315 65 0 0 chr1 101251949 101251995 -95943437 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1357 663 84 0 0 chr1 101251995 101252090 -95943342 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 1357 3982 72 8 8 chr1 101252415 101252950 -95942482 - L1Md_F2 LINE L1 0 6582 6048 3 1357 2642 66 8 3 chr1 101252950 101253301 -95942131 + L1Md_F2 LINE L1 5689 6041 -541 3 1357 198 0 0 0 chr1 101254105 101254127 -95941305 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1357 387 0 0 0 chr1 101254156 101254199 -95941233 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1357 555 29 0 0 chr1 101254205 101254274 -95941158 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1357 890 26 9 0 chr1 101254417 101254530 -95940902 + (CA)n Simple_repeat Simple_repeat 1 114 0 4 1357 339 121 0 0 chr1 101255203 101255261 -95940171 + (A)n Simple_repeat Simple_repeat 1 58 0 4 1357 207 184 26 0 chr1 101255292 101255330 -95940102 + CT-rich Low_complexity Low_complexity 1 39 0 4 1357 494 344 0 60 chr1 101255511 101255678 -95939754 + RSINE1 SINE B4 3 159 -6 4 1357 651 48 0 0 chr1 101255929 101256012 -95939420 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1357 673 282 68 22 chr1 101256015 101256225 -95939207 - MTC LTR MaLR -14 407 196 4 1357 612 306 118 6 chr1 101256261 101256352 -95939080 - Lx9 LINE L1 -34 7610 7513 4 1357 543 31 0 0 chr1 101256352 101256417 -95939015 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1357 648 280 305 8 chr1 101256417 101256836 -95938596 - Lx9 LINE L1 -132 7512 6966 4 1357 987 133 18 18 chr1 101256838 101257007 -95938425 - ETnERV-int LTR ERVK -291 3023 2855 4 1357 564 152 0 9 chr1 101257005 101257111 -95938321 + MYSERV16_I-int LTR ERVK 829 933 -1393 4 1357 4775 175 34 27 chr1 101257108 101258201 -95937231 + MYSERV16_I-int LTR ERVK 1062 2252 -74 4 1357 438 283 39 107 chr1 101258287 101258600 -95936832 + RLTR20D LTR ERVK 195 568 0 4 1357 1326 222 133 6 chr1 101259544 101259875 -95935557 + ORR1D1 LTR MaLR 1 373 -1 4 1357 5545 99 4 0 chr1 101260096 101260875 -95934557 - L1_Mus2 LINE L1 0 6566 5785 4 1357 230 56 0 27 chr1 101260911 101260948 -95934484 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1357 1041 103 0 0 chr1 101260951 101261097 -95934335 - B1_Mus2 SINE Alu 0 147 2 4 1357 25443 159 52 38 chr1 101261104 101266586 -95928846 - L1Md_F LINE L1 -92 5794 223 4 1357 270 0 0 0 chr1 101266654 101266684 -95928748 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1357 544 203 8 0 chr1 101267573 101267696 -95927736 + MERVL-int LTR ERVL 5362 5485 0 4 1357 1247 228 11 27 chr1 101267696 101267957 -95927475 + MT2B LTR ERVL 1 257 -344 4 1357 5577 201 67 14 chr1 101267766 101268071 -95927361 + ORR1A3-int LTR MaLR 639 963 -1000 4 1357 3321 44 0 0 chr1 101268071 101268477 -95926955 + L1Md_A LINE L1 6175 6580 -2 4 1357 5577 201 67 14 chr1 101268477 101269429 -95926003 + ORR1A3-int LTR MaLR 964 1961 -2 4 1357 1189 226 80 4 chr1 101269421 101269683 -95925749 + ORR1A3 LTR MaLR 2 283 -43 4 1357 2104 178 18 0 chr1 101269683 101270081 -95925351 - L1_Mur2 LINE L1 -1548 4329 3925 4 1357 34622 71 1 1 chr1 101270078 101275665 -95919767 - L1Md_F2 LINE L1 -12 6570 984 4 1357 7263 154 76 15 chr1 101275666 101277380 -95918052 + Lx2 LINE L1 5120 6966 -31 4 1357 317 288 108 17 chr1 101277416 101277536 -95917896 - MLT1F-int LTR MaLR -1027 462 332 4 1357 320 339 53 83 chr1 101277586 101277850 -95917582 - MLT-int LTR MaLR -1397 338 83 4 1357 181 109 0 42 chr1 101278011 101278059 -95917373 + T-rich Low_complexity Low_complexity 1 46 0 4 1357 184 30 0 57 chr1 101278148 101278183 -95917249 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 1357 603 198 57 58 chr1 101278184 101278481 -95916951 - RMER17C LTR ERVK -23 387 93 4 1357 1533 11 0 0 chr1 101278481 101278656 -95916776 + (GGGAGA)n Simple_repeat Simple_repeat 2 176 0 4 1357 603 235 12 51 chr1 101278656 101278841 -95916591 - RMER17C LTR ERVK -231 179 1 4 1357 216 299 59 49 chr1 101278844 101278946 -95916486 - B4 SINE B4 -152 140 38 4 1357 617 13 26 0 chr1 101279113 101279190 -95916242 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 4 1357 963 116 7 0 chr1 101279195 101279341 -95916091 - B1_Mus2 SINE Alu 0 147 1 4 1357 15024 111 3 4 chr1 101279835 101282066 -95913366 - L1_Mm LINE L1 -96 5787 3559 4 1357 5652 133 24 7 chr1 101282068 101282738 -95912694 + MusHAL1 LINE L1 1366 2036 -676 4 1357 429 36 0 0 chr1 101282738 101282793 -95912639 + (TTA)n Simple_repeat Simple_repeat 2 56 0 4 1357 5260 50 6 18 chr1 101282793 101283465 -95911967 - L1Md_F2 LINE L1 -18 6564 5901 4 1357 5652 133 24 7 chr1 101283465 101283778 -95911654 + MusHAL1 LINE L1 2037 2366 -346 4 1357 616 194 0 0 chr1 101285198 101285306 -95910126 - B1_Mur3 SINE Alu -7 142 35 4 1357 261 0 0 0 chr1 101286625 101286654 -95908778 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1357 564 77 0 0 chr1 101286654 101286731 -95908701 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1357 658 343 34 73 chr1 101286741 101286974 -95908458 - B4A SINE B4 -4 288 65 4 1357 212 154 0 0 chr1 101287241 101287280 -95908152 + CT-rich Low_complexity Low_complexity 2 40 0 4 1357 336 276 11 0 chr1 101287287 101287374 -95908058 - RSINE1 SINE B4 0 165 78 4 1357 1022 173 5 5 chr1 101287674 101287860 -95907572 - B2_Mm2 SINE B2 -9 186 1 4 1357 273 57 0 0 chr1 101289053 101289088 -95906344 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 4 1357 450 295 26 30 chr1 101289094 101289307 -95906125 + MT2A LTR ERVL 206 529 -55 4 1357 325 263 11 0 chr1 101289310 101289405 -95906027 + CT-rich Low_complexity Low_complexity 2 97 0 4 1357 25 0 0 0 chr1 101289579 101289604 -95905828 + AT_rich Low_complexity Low_complexity 1 25 0 4 1357 360 77 0 0 chr1 101290169 101290221 -95905211 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1357 408 310 21 181 chr1 101290268 101290599 -95904833 - B4A SINE B4 -12 280 3 4 1357 369 281 75 38 chr1 101290763 101290922 -95904510 + RMER20B LTR ERVK 129 293 -334 4 1357 1106 304 38 3 chr1 101291233 101291573 -95903859 + MTE2b LTR MaLR 15 366 -13 4 1357 272 200 44 44 chr1 101292422 101292490 -95902942 + ID4 SINE ID 3 70 -13 4 1357 1592 214 42 175 chr1 101292647 101293322 -95902110 + RLTR25A LTR ERVK 519 1103 0 4 1357 567 270 38 60 chr1 101293472 101293657 -95901775 - ID_B1 SINE B4 -33 191 11 4 1357 27 29 0 0 chr1 101294526 101294560 -95900872 + AT_rich Low_complexity Low_complexity 1 34 0 4 1357 254 396 70 35 chr1 101294838 101295037 -95900395 - B4 SINE B4 -79 213 8 4 1357 669 304 119 33 chr1 101295168 101295801 -95899631 - Lx8 LINE L1 -1546 5927 5248 4 1357 391 201 88 20 chr1 101295838 101295951 -95899481 - Lx9 LINE L1 -8 7636 7512 4 1357 198 0 0 0 chr1 101295951 101295973 -95899459 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1357 1165 266 272 22 chr1 101295973 101296417 -95899015 - Lx9 LINE L1 -133 7511 6960 4 1357 343 241 18 38 chr1 101296411 101296520 -95898912 - Lx9 LINE L1 -1717 5927 5819 4 1357 716 94 0 11 chr1 101297524 101297638 -95897794 - L1_Mur1 LINE L1 -781 5105 4998 4 1357 324 151 0 0 chr1 101297618 101297671 -95897761 + L1_Mur1 LINE L1 4952 5004 -882 4 1357 3610 134 18 13 chr1 101297670 101298478 -95896954 - Lx2 LINE L1 -989 6008 5191 4 1357 3691 181 46 15 chr1 101298478 101299201 -95896231 + Lx2 LINE L1 6238 6982 -15 4 1357 3610 171 25 6 chr1 101299201 101299219 -95896213 - Lx2 LINE L1 -687 5190 5171 4 1357 183 42 0 0 chr1 101299611 101299635 -95895797 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1357 26 0 0 0 chr1 101300219 101300245 -95895187 + AT_rich Low_complexity Low_complexity 1 26 0 4 1357 400 333 32 43 chr1 101300544 101300729 -95894703 + MER2 DNA MER2_type 134 316 -29 4 1357 252 214 106 12 chr1 101300798 101300883 -95894549 - L1MA9 LINE L1 -257 6055 5963 4 1357 459 291 45 82 chr1 101300976 101301288 -95894144 - MTD LTR MaLR -11 348 1 4 1357 981 315 28 49 chr1 101301575 101301993 -95893439 - MTE2a LTR MaLR -2 417 3 4 1357 26 50 0 0 chr1 101302088 101302128 -95893304 + AT_rich Low_complexity Low_complexity 1 40 0 4 1357 4089 177 29 18 chr1 101302642 101303538 -95891894 - Lx2A1 LINE L1 -1196 5812 4901 4 1357 5665 184 24 34 chr1 101303539 101304742 -95890690 + Lx2B LINE L1 5810 7000 0 4 1357 360 292 3 34 chr1 101304749 101304918 -95890514 + L1MA4 LINE L1 5657 5889 -411 4 1357 350 268 35 134 chr1 101304925 101305067 -95890365 - B4 SINE B4 -153 139 12 4 1357 603 117 0 0 chr1 101305257 101305351 -95890081 + (TCC)n Simple_repeat Simple_repeat 3 96 0 4 1357 690 317 0 80 chr1 101305364 101305614 -95889818 + ORR1E LTR MaLR 19 248 -111 4 1357 506 91 0 13 chr1 101305662 101305740 -95889692 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1357 189 74 0 0 chr1 101305771 101305798 -95889634 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1357 481 321 48 10 chr1 101305913 101306206 -95889226 - L1MA4A LINE L1 -384 5919 5616 4 1357 499 354 37 0 chr1 101306704 101306865 -95888567 + B4A SINE B4 126 292 0 4 1357 426 20 0 0 chr1 101306876 101306927 -95888505 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1357 22 0 0 0 chr1 101307000 101307022 -95888410 + AT_rich Low_complexity Low_complexity 1 22 0 4 1357 25 65 0 0 chr1 101307177 101307223 -95888209 + AT_rich Low_complexity Low_complexity 1 46 0 4 1357 35318 69 7 15 chr1 101308048 101314269 -95881163 - L1Md_F3 LINE L1 -15 6569 405 4 1357 8146 105 16 16 chr1 101314506 101316399 -95879033 + L1VL2 LINE L1 325 2217 -1398 4 1357 32 0 0 0 chr1 101316530 101316562 -95878870 + AT_rich Low_complexity Low_complexity 1 32 0 4 1357 215 380 54 81 chr1 101316633 101316782 -95878650 + B4A SINE B4 100 244 -48 4 1357 498 46 0 0 chr1 101316820 101316885 -95878547 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1357 4101 229 23 23 chr1 101316900 101317897 -95877535 - Lx2B LINE L1 -3 6997 6001 4 1357 22 56 0 0 chr1 101317943 101317979 -95877453 + AT_rich Low_complexity Low_complexity 1 36 0 4 1357 730 178 82 0 chr1 101318053 101318188 -95877244 + Lx2 LINE L1 6786 6931 -66 4 1357 568 325 23 29 chr1 101318196 101318370 -95877062 + B3 SINE B2 27 199 -17 4 1357 22 35 0 0 chr1 101318370 101318399 -95877033 + AT_rich Low_complexity Low_complexity 1 29 0 4 1357 233 348 17 51 chr1 101318429 101318547 -95876885 - RSINE1 SINE B4 -40 125 12 4 169 231 312 51 74 chr1 101318613 101319125 -95876307 + L1MD2 LINE L1 2841 3340 -2806 4 1358 300 298 69 25 chr1 101319683 101319886 -95875546 + L1MD2 LINE L1 5666 5877 -482 4 1358 183 129 0 0 chr1 101320685 101320716 -95874716 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1358 624 221 0 0 chr1 101320716 101320870 -95874562 + CT-rich Low_complexity Low_complexity 3 156 0 4 1358 1152 286 21 37 chr1 101321063 101321390 -95874042 + ORR1B2 LTR MaLR 8 329 -38 4 1358 28 29 0 0 chr1 101322599 101322634 -95872798 + AT_rich Low_complexity Low_complexity 1 35 0 4 1358 624 137 0 0 chr1 101322778 101322880 -95872552 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 1358 387 0 0 0 chr1 101323282 101323325 -95872107 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1358 1135 216 14 20 chr1 101323339 101323632 -95871800 + L1_Mur2 LINE L1 2077 2367 -3510 5 1358 959 208 12 121 chr1 101323713 101324036 -95871396 - L1_Mur3 LINE L1 -1311 4569 4282 5 1358 1022 268 83 30 chr1 101324044 101324513 -95870919 + L1_Mur2 LINE L1 4064 4557 -1320 5 1358 24 0 0 0 chr1 101324515 101324539 -95870893 + AT_rich Low_complexity Low_complexity 1 24 0 5 1358 462 286 100 73 chr1 101324673 101324933 -95870499 + MER89 LTR ERV1 274 540 -19 5 1358 341 289 9 19 chr1 101326024 101326130 -95869302 + MTEb LTR MaLR 273 377 -2 5 1358 6559 91 9 20 chr1 101326411 101327353 -95868079 + L1_Mus3 LINE L1 5711 6638 0 5 1358 1244 218 69 11 chr1 101328241 101328515 -95866917 - RLTR25A LTR ERVK -8 1095 806 5 1358 14271 70 11 3 chr1 101328616 101331182 -95864250 - L1Md_F2 LINE L1 -12 6570 3985 5 1358 432 212 182 0 chr1 101331182 101331314 -95864118 - RLTR25A LTR ERVK -257 846 691 5 1358 321 233 0 0 chr1 101331314 101331404 -95864028 + A-rich Low_complexity Low_complexity 1 90 0 5 1358 3307 190 52 17 chr1 101331411 101331775 -95863657 - RLTR25A LTR ERVK -422 681 304 5 1358 1576 42 5 0 chr1 101331775 101331966 -95863466 - B2_Mm1t SINE B2 0 193 2 5 1358 3307 190 52 17 chr1 101331966 101332259 -95863173 - RLTR25A LTR ERVK -800 303 1 5 1358 774 228 89 5 chr1 101332259 101332449 -95862983 - Lx5 LINE L1 -464 6586 6381 5 1358 3202 210 15 21 chr1 101332446 101333197 -95862235 + L1_Mur2 LINE L1 4461 5206 -671 5 1358 2859 95 83 7 chr1 101333737 101334180 -95861252 - L1Md_F2 LINE L1 -12 6570 6094 5 1358 2177 85 10 0 chr1 101334180 101334475 -95860957 + L1Md_F2 LINE L1 5830 6127 -455 5 1358 243 189 0 0 chr1 101334655 101334708 -95860724 + GA-rich Low_complexity Low_complexity 4 56 0 5 1358 5769 52 0 4 chr1 101334780 101335499 -95859933 - L1Md_A LINE L1 -2 6580 5865 5 1358 2668 29 0 0 chr1 101335499 101335810 -95859622 + L1Md_A LINE L1 5556 5866 -17 5 1358 2376 164 19 148 chr1 101336919 101337020 -95858412 + L1_Mur2 LINE L1 1950 2050 -3827 5 1358 603 27 0 0 chr1 101337020 101337093 -95858339 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1358 2376 164 19 148 chr1 101337093 101337308 -95858124 + L1_Mur2 LINE L1 2051 2262 -3615 5 1358 1120 62 21 0 chr1 101337308 101337452 -95857980 + B1_Mm SINE Alu 1 147 0 5 1358 2376 164 19 148 chr1 101337452 101337865 -95857567 + L1_Mur2 LINE L1 2263 2585 -3292 5 1358 1044 165 204 0 chr1 101337870 101338149 -95857283 + L1_Mur2 LINE L1 2864 3199 -2678 5 1358 1197 157 19 0 chr1 101338134 101338350 -95857082 + L1_Mur2 LINE L1 3977 4196 -1681 5 1358 1399 241 44 59 chr1 101338348 101338928 -95856504 + Lx4A LINE L1 6117 7047 -11 5 1358 761 11 21 0 chr1 101338930 101339023 -95856409 + (GAAAA)n Simple_repeat Simple_repeat 2 96 0 5 1358 746 50 10 0 chr1 101340185 101340284 -95855148 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 5 1358 3743 51 4 19 chr1 101340284 101340765 -95854667 - MT2C_Mm LTR ERVL -1 474 1 5 1358 24 0 0 0 chr1 101341046 101341070 -95854362 + AT_rich Low_complexity Low_complexity 1 24 0 5 1358 321 26 0 0 chr1 101341169 101341207 -95854225 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1358 4201 227 85 11 chr1 101341208 101342718 -95852714 - Lx4A LINE L1 -2 7056 5363 5 1358 339 165 0 34 chr1 101342852 101342940 -95852492 - L1Md_A LINE L1 0 6582 6498 5 1358 1139 81 0 26 chr1 101343439 101343451 -95851981 - B1_Mus1 SINE Alu 0 148 140 5 1358 285 0 43 22 chr1 101343451 101343497 -95851935 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1358 1139 81 0 26 chr1 101343497 101343636 -95851796 - B1_Mus1 SINE Alu -9 139 1 5 1358 313 308 31 99 chr1 101344053 101344244 -95851188 + B3A SINE B2 4 181 -17 5 1358 549 0 0 0 chr1 101344245 101344306 -95851126 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1358 309 342 75 50 chr1 101344944 101345104 -95850328 + HAL1-3A_ME LINE L1 2277 2440 -418 5 1358 24 0 0 0 chr1 101345240 101345264 -95850168 + AT_rich Low_complexity Low_complexity 1 24 0 5 1358 790 308 44 22 chr1 101346044 101346316 -95849116 - B4A SINE B4 -4 288 11 5 1358 32 75 0 0 chr1 101346409 101346476 -95848956 + AT_rich Low_complexity Low_complexity 1 67 0 5 1358 276 30 0 0 chr1 101346772 101346805 -95848627 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1358 233 282 22 22 chr1 101346817 101346951 -95848481 + L1M3 LINE L1 5114 5247 -893 5 1358 295 268 24 0 chr1 101347250 101347332 -95848100 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1358 808 223 83 83 chr1 101347354 101347584 -95847848 + ORR1A4 LTR MaLR 1 230 -99 5 1358 893 248 97 103 chr1 101347584 101347935 -95847497 + RLTR11A LTR ERVK 1 349 -179 5 1358 451 0 0 139 chr1 101347954 101348162 -95847270 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 5 1358 478 250 88 44 chr1 101348165 101348324 -95847108 + RLTR11A LTR ERVK 335 500 -28 5 1358 320 324 29 0 chr1 101349184 101349286 -95846146 + B1_Mur3 SINE Alu 39 143 -6 5 1358 21 0 0 0 chr1 101349317 101349338 -95846094 + AT_rich Low_complexity Low_complexity 1 21 0 5 1358 4438 214 42 34 chr1 101349483 101350602 -95844830 + MYSERV16_I-int LTR ERVK 1 1128 -1198 5 1358 531 282 97 42 chr1 101350644 101350710 -95844722 - RLTR9A LTR ERVK 0 368 307 5 1358 198 0 0 0 chr1 101350710 101350732 -95844700 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 1358 531 282 97 42 chr1 101350732 101350902 -95844530 - RLTR9A LTR ERVK -62 306 119 5 1358 3079 220 60 10 chr1 101350956 101350997 -95844435 + MYSERV16_I-int LTR ERVK 1161 1200 -1126 5 1358 2681 94 66 2 chr1 101350997 101351393 -95844039 - BGLII LTR ERVK 0 421 1 5 1358 3079 220 60 10 chr1 101351393 101351924 -95843508 + MYSERV16_I-int LTR ERVK 1201 1743 -583 5 1358 453 36 0 0 chr1 101351924 101351979 -95843453 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1358 3079 244 102 10 chr1 101351979 101352477 -95842955 + MYSERV16_I-int LTR ERVK 1744 1997 -329 5 1358 1415 244 68 83 chr1 101352479 101353010 -95842422 + RLTR11A LTR ERVK 1 523 -5 5 1358 590 194 0 0 chr1 101353016 101353114 -95842318 + ORR1A4 LTR MaLR 224 321 -8 5 1358 5861 200 111 69 chr1 101353121 101354744 -95840688 + ORR1A4-int LTR MaLR 1 1691 -272 5 1358 2494 232 52 11 chr1 101354739 101355283 -95840149 + RLTR25B LTR ERVK 6 571 -457 5 1358 739 189 32 7 chr1 101355284 101355438 -95839994 + RLTR25B LTR ERVK 698 855 -248 5 1358 7230 177 33 9 chr1 101355441 101356560 -95838872 - Lx2 LINE L1 0 6997 5863 5 1358 504 0 0 0 chr1 101356560 101356616 -95838816 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1358 17676 193 21 96 chr1 101356616 101358295 -95837137 - Lx2 LINE L1 -1135 5862 4189 5 1358 2298 174 30 21 chr1 101358295 101358724 -95836708 + RMER13B LTR ERVK 139 571 -337 5 1358 17676 193 21 96 chr1 101358724 101362169 -95833263 - Lx2 LINE L1 -1135 4188 752 5 1358 780 235 53 21 chr1 101362230 101362417 -95833015 + RLTR25B LTR ERVK 911 1103 0 5 1358 452 213 122 22 chr1 101362417 101362548 -95832884 + ORR1B1-int LTR MaLR 1180 1324 -185 5 1358 521 319 30 12 chr1 101363643 101363811 -95831621 - ID_B1 SINE B4 -52 172 2 5 1358 1197 286 34 38 chr1 101364120 101364650 -95830782 + Lx8 LINE L1 6937 7464 -9 5 1358 577 349 17 21 chr1 101364753 101364987 -95830445 - ORR1E LTR MaLR -126 233 1 5 1358 243 88 0 0 chr1 101365890 101365924 -95829508 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 5 1358 449 110 0 14 chr1 101366109 101366183 -95829249 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1358 419 348 47 33 chr1 101366222 101366436 -95828996 - B4A SINE B4 -25 267 51 5 1358 24 32 0 0 chr1 101367021 101367052 -95828380 + AT_rich Low_complexity Low_complexity 1 31 0 5 1358 373 261 147 9 chr1 101367052 101367168 -95828264 - B1_Mur2 SINE Alu -8 141 10 5 1358 465 374 83 7 chr1 101367272 101367560 -95827872 + MTE2a LTR MaLR 63 372 -7 5 1358 17374 206 43 63 chr1 101367747 101371915 -95823517 - Lx2B LINE L1 -145 6855 2795 5 1358 417 39 0 0 chr1 101371915 101371966 -95823466 + (TTG)n Simple_repeat Simple_repeat 1 51 0 5 1358 17374 201 46 67 chr1 101371966 101372490 -95822942 - Lx2B LINE L1 -3092 2794 2272 5 1358 230 0 33 0 chr1 101372490 101372520 -95822912 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1358 17374 215 45 50 chr1 101372520 101374000 -95821432 - Lx2B LINE L1 -3615 2271 798 5 1358 442 391 61 58 chr1 101374454 101374731 -95820701 - B4A SINE B4 -14 278 1 5 1358 24511 126 15 35 chr1 101375522 101380513 -95814919 - L1_Mus2 LINE L1 -1 6565 1684 5 1358 9071 103 10 1 chr1 101380502 101381810 -95813622 - L1_Mus2 LINE L1 0 6566 5224 5 1358 396 0 0 0 chr1 101381810 101381854 -95813578 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1358 9071 124 26 5 chr1 101381854 101382674 -95812758 - L1_Mus2 LINE L1 -660 5223 4407 5 1358 2669 128 41 2 chr1 101382669 101383108 -95812324 + L1_Mus2 LINE L1 3957 4412 -1471 5 1358 1188 162 98 33 chr1 101383126 101383401 -95812031 + Lx LINE L1 6361 6653 -1 5 1358 1008 179 77 32 chr1 101383601 101383849 -95811583 + RLTR22_Mur LTR ERVK 1590 1848 0 5 1358 285 254 0 66 chr1 101383911 101384033 -95811399 - Lx9 LINE L1 0 7644 7531 5 1358 414 0 0 0 chr1 101384042 101384088 -95811344 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1358 212 278 160 80 chr1 101384116 101384189 -95811243 - B1_Mur2 SINE Alu -1 148 66 5 1358 1509 228 52 81 chr1 101384189 101384672 -95810760 - RLTR1B LTR ERV1 0 512 1 5 1358 311 266 0 110 chr1 101384907 101385021 -95810411 + ORR1D1 LTR MaLR 3 103 -281 5 1358 24 0 0 0 chr1 101385111 101385135 -95810297 + AT_rich Low_complexity Low_complexity 1 24 0 5 1358 412 300 21 14 chr1 101385674 101385816 -95809616 + RMER20B LTR ERVK 234 376 -251 5 1358 6969 149 17 22 chr1 101385841 101387650 -95807782 + L1VL4 LINE L1 360 2162 -1397 5 1358 5730 184 27 6 chr1 101387666 101388978 -95806454 + Lx2 LINE L1 4578 5920 -1077 5 1358 256 339 7 41 chr1 101389239 101389419 -95806013 + CT-rich Low_complexity Low_complexity 1 173 0 5 1358 486 133 0 0 chr1 101389616 101389706 -95805726 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1358 268 264 0 0 chr1 101390000 101390053 -95805379 - B4 SINE B4 -73 219 167 5 1358 4248 68 2 0 chr1 101391219 101391759 -95803673 - L1_Mus1 LINE L1 0 6567 6027 5 1358 314 279 83 58 chr1 101392588 101392744 -95802688 - B4A SINE B4 -130 162 3 5 1358 188 241 0 17 chr1 101393504 101393563 -95801869 + GA-rich Low_complexity Low_complexity 1 58 0 5 1358 344 339 103 0 chr1 101393718 101393868 -95801564 - B3A SINE B2 -5 211 44 5 1358 316 271 6 6 chr1 101393868 101394039 -95801393 + (TA)n Simple_repeat Simple_repeat 2 172 0 5 1358 25 0 0 0 chr1 101394867 101394892 -95800540 + AT_rich Low_complexity Low_complexity 1 25 0 5 1358 283 313 160 48 chr1 101395428 101395616 -95799816 + B4A SINE B4 9 217 -75 5 1358 611 351 10 21 chr1 101396666 101396954 -95798478 + B4A SINE B4 1 285 -7 5 1358 333 0 0 0 chr1 101396958 101396995 -95798437 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1358 4085 113 35 0 chr1 101397070 101397697 -95797735 - L1_Mus4 LINE L1 -14 6622 5974 5 1358 3421 168 20 0 chr1 101397698 101397878 -95797554 + L1_Mus4 LINE L1 5266 5449 -434 5 1358 207 0 0 0 chr1 101397878 101397901 -95797531 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1358 3421 111 5 0 chr1 101397901 101398418 -95797014 + L1_Mus4 LINE L1 5450 5975 -661 5 1358 624 324 122 69 chr1 101398549 101398866 -95796566 - ORR1E LTR MaLR -5 354 31 5 1358 513 0 0 0 chr1 101398866 101398923 -95796509 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1358 624 324 122 69 chr1 101398923 101398940 -95796492 - ORR1E LTR MaLR -329 30 4 5 1358 783 79 9 0 chr1 101398948 101399062 -95796370 - B1_Mus2 SINE Alu -1 146 32 5 1358 1257 319 27 3 chr1 101399394 101399762 -95795670 + MTEa LTR MaLR 3 379 0 5 1358 3198 226 109 10 chr1 101399907 101400688 -95794744 + RMER13A LTR ERVK 1 858 -2 6 1358 559 335 58 24 chr1 101401130 101401335 -95794097 - B4A SINE B4 0 292 81 6 1358 2013 266 20 29 chr1 101401381 101401941 -95793491 - Lx4B LINE L1 -9 7049 6495 6 1358 1546 222 115 19 chr1 101401947 101402546 -95792886 - L1_Mur2 LINE L1 -238 5648 4926 6 1358 2837 205 85 53 chr1 101402552 101403473 -95791959 + RMER12 LTR ERVK 5 1318 -86 6 1358 233 243 100 0 chr1 101403497 101403567 -95791865 + RLTR21 LTR ERVK 1341 1417 -155 6 1358 1415 222 22 32 chr1 101403691 101404095 -95791337 - L1_Mur2 LINE L1 -956 4921 4522 6 1358 521 55 0 14 chr1 101404095 101404169 -95791263 + (TCC)n Simple_repeat Simple_repeat 2 74 0 6 1358 1052 94 0 27 chr1 101404169 101404354 -95791078 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1358 6627 208 25 58 chr1 101404393 101404704 -95790728 - L1_Mur2 LINE L1 -2829 3048 2731 6 1358 837 99 0 0 chr1 101404704 101404825 -95790607 + (TC)n Simple_repeat Simple_repeat 2 122 0 6 1358 6627 208 25 58 chr1 101404825 101404840 -95790592 - L1_Mur2 LINE L1 -3147 2730 2730 6 1358 1125 89 0 0 chr1 101404840 101404986 -95790446 - B1_Mus2 SINE Alu 0 147 2 6 1358 6627 208 25 58 chr1 101404986 101406291 -95789141 - L1_Mur2 LINE L1 -3147 2730 1467 6 1358 2767 68 42 5 chr1 101406291 101406677 -95788755 - MTB LTR MaLR 0 400 1 6 1358 6627 226 57 50 chr1 101406677 101407388 -95788044 - L1_Mur2 LINE L1 -4411 1466 746 6 1358 1418 197 43 7 chr1 101407757 101408033 -95787399 - ORR1B2 LTR MaLR -81 286 1 6 1358 742 219 93 0 chr1 101408033 101408216 -95787216 - ORR1B2-int LTR MaLR 0 1509 1310 6 1358 887 320 75 28 chr1 101408625 101409226 -95786206 + MuRRS4-int LTR ERV1 1044 1672 -3391 6 1358 859 337 119 42 chr1 101409322 101410547 -95784885 + MuRRS4-int LTR ERV1 2677 3995 -3611 6 1358 1019 218 65 42 chr1 101410565 101410828 -95784604 - ORR1B2-int LTR MaLR -1240 269 1 6 1358 1582 228 10 96 chr1 101410828 101411225 -95784207 - ORR1B2 LTR MaLR 0 367 5 6 1358 528 84 0 0 chr1 101411805 101411888 -95783544 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 1358 1091 267 11 27 chr1 101412059 101412429 -95783003 + Lx9 LINE L1 5476 5839 -8 6 1358 183 80 0 0 chr1 101412444 101412469 -95782963 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1358 1059 301 121 60 chr1 101412497 101412709 -95782723 + Lx9 LINE L1 6077 6329 -1315 6 1358 638 35 12 0 chr1 101412709 101412794 -95782638 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 6 1358 1059 301 121 60 chr1 101412794 101413243 -95782189 + Lx9 LINE L1 6330 6778 -866 6 1358 2995 132 12 6 chr1 101413379 101413861 -95781571 + RLTR1C LTR ERV1 1 485 -18 6 1358 31 26 0 0 chr1 101413874 101413912 -95781520 + AT_rich Low_complexity Low_complexity 1 38 0 6 1358 882 286 47 43 chr1 101413917 101414217 -95781215 + Lx9 LINE L1 6893 7193 -451 6 1358 204 222 0 62 chr1 101414233 101414329 -95781103 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 6 1358 198 191 0 0 chr1 101414334 101414376 -95781056 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1358 317 164 14 0 chr1 101414600 101414673 -95780759 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1358 22 70 0 0 chr1 101414683 101414726 -95780706 + AT_rich Low_complexity Low_complexity 1 43 0 6 1358 751 272 78 34 chr1 101414787 101415166 -95780266 + L1_Rod LINE L1 2291 2668 -3179 6 1358 411 226 0 48 chr1 101415187 101415523 -95779909 + (TATATG)n Simple_repeat Simple_repeat 1 319 0 6 1358 1100 288 26 23 chr1 101415572 101415960 -95779472 + L1_Rod LINE L1 3770 4158 -1689 6 1358 1455 277 162 14 chr1 101415962 101416541 -95778891 + Lx7 LINE L1 6703 7367 -329 6 1358 1328 62 6 0 chr1 101416665 101416844 -95778588 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1358 232 238 149 79 chr1 101416859 101416923 -95778509 - B3A SINE B2 -62 136 74 6 1358 3055 20 0 0 chr1 101416923 101417269 -95778163 - ORR1A0 LTR MaLR 0 346 1 6 1358 232 238 149 79 chr1 101417269 101417318 -95778114 - B3A SINE B2 -125 73 16 6 1358 21 0 0 0 chr1 101417459 101417480 -95777952 + AT_rich Low_complexity Low_complexity 1 21 0 6 1358 791 88 0 0 chr1 101417752 101417854 -95777578 + L1_Mus1 LINE L1 6284 6385 -182 6 1358 182 138 0 0 chr1 101418065 101418094 -95777338 - MIRc SINE MIR -154 114 86 6 1358 26 30 0 0 chr1 101418463 101418496 -95776936 + AT_rich Low_complexity Low_complexity 1 33 0 6 1358 752 310 50 31 chr1 101418929 101419349 -95776083 + L1MA5 LINE L1 5532 5959 -341 6 1358 211 361 0 76 chr1 101419607 101419712 -95775720 - B1F SINE Alu -7 142 46 6 1358 366 366 15 44 chr1 101419986 101420123 -95775309 + ID_B1 SINE B4 81 213 -11 6 1358 189 0 0 0 chr1 101420150 101420171 -95775261 + (TC)n Simple_repeat Simple_repeat 1 21 0 6 1358 381 22 0 0 chr1 101420171 101420216 -95775216 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1358 431 333 0 35 chr1 101420505 101420648 -95774784 + RSINE1 SINE B4 3 140 -25 6 1358 24 53 0 0 chr1 101420791 101420829 -95774603 + AT_rich Low_complexity Low_complexity 1 38 0 6 1358 24 0 0 0 chr1 101421196 101421220 -95774212 + AT_rich Low_complexity Low_complexity 1 24 0 6 1358 189 74 0 0 chr1 101422224 101422251 -95773181 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1358 513 365 80 42 chr1 101422632 101422895 -95772537 - B4A SINE B4 -18 274 2 6 1358 396 0 0 0 chr1 101423231 101423275 -95772157 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1358 1017 113 7 0 chr1 101424308 101424449 -95770983 + B1_Mus2 SINE Alu 1 142 -5 6 1358 372 130 0 0 chr1 101424456 101424525 -95770907 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 6 1358 234 105 0 0 chr1 101424525 101424563 -95770869 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1358 2017 61 0 4 chr1 101424644 101424906 -95770526 + L1Md_F2 LINE L1 6321 6581 -1 6 1358 412 301 75 8 chr1 101425714 101425848 -95769584 - RSINE1 SINE B4 -15 150 8 6 1358 277 339 38 53 chr1 101425879 101426010 -95769422 + MLT1E1A LTR MaLR 145 273 -381 6 1358 291 315 93 65 chr1 101425999 101426247 -95769185 + MLT1E1A LTR MaLR 378 632 -48 6 1358 26 30 0 0 chr1 101426512 101426545 -95768887 + AT_rich Low_complexity Low_complexity 1 33 0 6 1358 552 257 140 0 chr1 101426853 101427032 -95768400 - Lx7 LINE L1 -45 7651 7448 6 1358 932 85 0 44 chr1 101427014 101427149 -95768283 + L1_Mus2 LINE L1 6272 6400 -166 6 1358 965 240 13 13 chr1 101427544 101427768 -95767664 - RLTR20B1 LTR ERVK 0 563 340 6 1358 455 253 0 32 chr1 101427765 101427859 -95767573 - RLTR20B1 LTR ERVK -422 141 51 6 1358 221 283 109 36 chr1 101428124 101428234 -95767198 + B2_Mm1a SINE B2 10 127 -66 6 1358 243 0 0 0 chr1 101428404 101428431 -95767001 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1358 339 319 181 33 chr1 101428492 101428735 -95766697 - MTE2a LTR MaLR -11 368 90 6 1358 22 0 0 0 chr1 101429038 101429060 -95766372 + AT_rich Low_complexity Low_complexity 1 22 0 6 1358 514 305 40 0 chr1 101429387 101429550 -95765882 - B4A SINE B4 -40 252 80 6 1358 578 344 16 21 chr1 101430002 101430195 -95765237 - B4A SINE B4 -4 288 97 6 1358 1069 245 39 70 chr1 101430287 101430599 -95764833 - MTE2a LTR MaLR 0 379 78 6 1358 309 309 75 42 chr1 101432334 101432674 -95762758 - RLTR19-int LTR ERVK -4683 4276 3970 6 1358 297 159 0 0 chr1 101433636 101433699 -95761733 + T-rich Low_complexity Low_complexity 1 63 0 6 1358 1081 56 7 0 chr1 101433700 101433842 -95761590 - B1_Mus1 SINE Alu 0 148 6 6 1358 288 332 18 23 chr1 101433865 101434084 -95761348 - MurERV4-int LTR ERVK -1776 3484 3267 6 1358 382 130 14 0 chr1 101434090 101434159 -95761273 - RLTR19-int LTR ERVK -2265 3872 3803 6 1358 1120 166 0 5 chr1 101434171 101434365 -95761067 - RLTR19-int LTR ERVK -2438 3699 3507 6 1358 26 88 0 0 chr1 101434607 101434675 -95760757 + AT_rich Low_complexity Low_complexity 1 68 0 6 1358 765 274 13 43 chr1 101434675 101434908 -95760524 + RMER15 LTR ERVL 345 570 -5 6 1358 228 212 0 0 chr1 101435163 101435229 -95760203 + (TTA)n Simple_repeat Simple_repeat 2 67 0 6 1358 903 309 36 51 chr1 101435268 101435599 -95759833 + ORR1E LTR MaLR 22 347 -12 6 1358 295 353 17 0 chr1 101435722 101435841 -95759591 + MLT1E2 LTR MaLR 22 142 -485 6 1358 2087 309 54 17 chr1 101436022 101436862 -95758570 + Lx9 LINE L1 6613 7483 -161 6 1358 783 123 0 0 chr1 101436867 101436989 -95758443 + (GAGAA)n Simple_repeat Simple_repeat 5 126 0 6 1358 220 39 0 0 chr1 101436991 101437017 -95758415 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 6 1358 186 206 14 29 chr1 101437019 101437089 -95758343 + GA-rich Low_complexity Low_complexity 1 69 0 6 1358 7303 139 55 29 chr1 101437103 101438902 -95756530 - L1_Mus2 LINE L1 -43 6523 4683 6 1358 377 73 18 0 chr1 101438898 101438953 -95756479 - MusHAL1 LINE L1 -1613 1099 1044 6 1358 27911 100 51 7 chr1 101438968 101444271 -95751161 - L1Md_F2 LINE L1 0 6582 1004 6 1358 239 416 0 14 chr1 101444271 101444410 -95751022 + ORR1E LTR MaLR 51 187 -172 6 1358 29 0 0 0 chr1 101445176 101445205 -95750227 + AT_rich Low_complexity Low_complexity 1 29 0 6 1358 1823 112 4 0 chr1 101445213 101445482 -95749950 - L1_Mus1 LINE L1 0 6567 6298 6 1358 426 294 155 0 chr1 101445615 101445802 -95749630 - B3 SINE B2 0 216 1 6 1358 801 288 142 24 chr1 101446424 101446712 -95748720 + ORR1E LTR MaLR 1 322 -37 6 1358 1480 265 54 18 chr1 101446945 101447337 -95748095 + MTD LTR MaLR 2 407 -12 6 1358 729 0 0 0 chr1 101447378 101447459 -95747973 + (GGAAA)n Simple_repeat Simple_repeat 5 85 0 6 1358 401 312 34 101 chr1 101447585 101447763 -95747669 + B4 SINE B4 125 290 -2 6 1358 1182 247 35 3 chr1 101447844 101448128 -95747304 + RMER15 LTR ERVL 283 575 0 6 1358 306 322 46 0 chr1 101448871 101448958 -95746474 + B4A SINE B4 2 92 -200 6 1358 471 349 64 0 chr1 101449124 101449296 -95746136 + B3A SINE B2 9 191 -7 6 1358 351 18 35 18 chr1 101449466 101449523 -95745909 + (TAA)n Simple_repeat Simple_repeat 2 59 0 6 1359 252 0 0 0 chr1 101450089 101450117 -95745315 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1359 660 194 0 0 chr1 101450120 101450254 -95745178 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 1359 279 336 9 46 chr1 101450273 101450382 -95745050 - B4A SINE B4 -2 290 186 6 1359 269 349 98 34 chr1 101450774 101450979 -95744453 + RMER2 LTR ERV1 334 551 -16 6 1359 529 326 55 39 chr1 101451556 101451811 -95743621 - RMER12 LTR ERVK -55 1267 1009 6 1359 2498 243 48 41 chr1 101451974 101452758 -95742674 - RLTR22_Mur LTR ERVK -1058 790 1 6 1359 1875 226 29 23 chr1 101452826 101453269 -95742163 + RLTR25B LTR ERVK 1 446 -582 6 1359 31098 102 32 32 chr1 101453430 101457390 -95738042 + ETnERV3-int LTR ERVK 186 3977 -1831 6 1359 360 0 0 0 chr1 101457390 101457430 -95738002 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 6 1359 31098 96 33 33 chr1 101457430 101457815 -95737617 + ETnERV3-int LTR ERVK 3978 4387 -1421 6 1359 6466 61 6 19 chr1 101457815 101458681 -95736751 - RLTR13A LTR ERVK 0 855 1 6 1359 31098 96 33 33 chr1 101458681 101458940 -95736492 + ETnERV3-int LTR ERVK 4388 4633 -1175 6 1359 2144 30 114 0 chr1 101458940 101459202 -95736230 - RLTR10B LTR ERVK 0 292 1 7 1359 31098 110 128 17 chr1 101459202 101460187 -95735245 + ETnERV3-int LTR ERVK 4634 5780 -28 6 1359 4465 80 29 25 chr1 101460201 101461067 -95734365 + RLTR13B4 LTR ERVK 1 893 0 6 1359 2594 182 29 12 chr1 101461067 101461557 -95733875 + RLTR25A LTR ERVK 357 854 -249 7 1359 7353 84 14 1 chr1 101461579 101462724 -95732708 - L1_Mus1 LINE L1 -2 6565 5411 7 1359 527 216 105 105 chr1 101462737 101462861 -95732571 + RLTR25A LTR ERVK 847 972 -56 7 1359 657 96 0 0 chr1 101462861 101462955 -95732477 + (CCTTG)n Simple_repeat Simple_repeat 5 98 0 7 1359 527 216 105 105 chr1 101462955 101463011 -95732421 + RLTR25A LTR ERVK 973 1027 -1 7 1359 866 253 56 51 chr1 101463024 101463434 -95731998 + RMER2 LTR ERV1 1 524 -43 7 1359 263 256 47 47 chr1 101463920 101464006 -95731426 + B4A SINE B4 195 280 -12 7 1359 372 94 0 0 chr1 101464041 101464094 -95731338 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1359 335 384 52 19 chr1 101464334 101464488 -95730944 + RSINE1 SINE B4 6 164 -1 7 1359 22 35 0 0 chr1 101464488 101464517 -95730915 + AT_rich Low_complexity Low_complexity 1 29 0 7 1359 486 0 0 0 chr1 101465572 101465626 -95729806 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1359 328 321 90 117 chr1 101466427 101466727 -95728705 + B4A SINE B4 1 292 0 7 1359 1551 258 55 28 chr1 101467956 101468390 -95727042 + MT2A LTR ERVL 1 446 -87 7 1359 365 70 18 0 chr1 101468775 101468832 -95726600 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1359 220 179 0 0 chr1 101468832 101468871 -95726561 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1359 473 138 37 0 chr1 101469560 101469669 -95725763 + Lx2B LINE L1 6884 6996 -4 7 1359 229 245 69 39 chr1 101469904 101470006 -95725426 + Lx8 LINE L1 7366 7470 -3 7 1359 225 0 0 0 chr1 101470271 101470296 -95725136 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1359 522 57 0 0 chr1 101470446 101470516 -95724916 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1359 22 0 0 0 chr1 101471201 101471223 -95724209 + AT_rich Low_complexity Low_complexity 1 22 0 7 1359 217 359 91 36 chr1 101471224 101471334 -95724098 - B4 SINE B4 -82 210 95 7 1359 218 267 38 62 chr1 101471385 101471465 -95723967 - B4 SINE B4 -213 79 2 7 1359 4545 88 30 57 chr1 101471933 101472702 -95722730 + RMER17A LTR ERVK 1 748 -3 7 1359 407 274 54 38 chr1 101472758 101472955 -95722477 - RLTR16 LTR ERVK -319 249 32 7 1359 594 28 0 0 chr1 101472999 101473071 -95722361 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1359 495 0 0 0 chr1 101473484 101473539 -95721893 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1359 551 328 63 29 chr1 101473587 101473794 -95721638 - B4A SINE B4 -75 217 4 7 1359 10837 34 5 3 chr1 101474624 101476592 -95718840 - L1Md_F2 LINE L1 0 6582 4609 7 1359 6927 73 1 10 chr1 101476598 101477508 -95717924 - L1_Mus2 LINE L1 0 6566 5665 7 1359 493 258 79 12 chr1 101478159 101478324 -95717108 - MTEb LTR MaLR 0 379 204 7 1359 461 359 43 19 chr1 101478597 101478807 -95716625 - MTEb LTR MaLR -164 215 1 7 1359 609 52 0 0 chr1 101480040 101480117 -95715315 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 7 1359 722 190 223 0 chr1 101480595 101480779 -95714653 - URR1A DNA MER1_type -1 225 1 7 1359 585 120 0 0 chr1 101480868 101480960 -95714472 + (TCCCC)n Simple_repeat Simple_repeat 2 93 0 7 1359 358 317 107 29 chr1 101480972 101481177 -95714255 - ID_B1 SINE B4 -2 222 2 7 1359 4003 84 4 13 chr1 101481742 101482284 -95713148 + L1_Mus1 LINE L1 6029 6565 -2 7 1359 26 0 0 0 chr1 101482918 101482944 -95712488 + AT_rich Low_complexity Low_complexity 1 26 0 7 1359 1479 242 59 9 chr1 101483126 101483464 -95711968 + MTD LTR MaLR 6 360 -59 7 1359 304 316 10 0 chr1 101484362 101484539 -95710893 - L1MA4 LINE L1 -385 5915 5734 7 1359 513 115 0 0 chr1 101484779 101484857 -95710575 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1359 413 350 29 0 chr1 101484988 101485125 -95710307 + B4A SINE B4 88 228 -64 7 1359 6721 33 0 0 chr1 101485125 101485918 -95709514 + L1Md_T LINE L1 5788 6580 -2 7 1359 297 97 27 14 chr1 101485922 101485995 -95709437 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 7 1359 294 327 20 10 chr1 101486384 101486486 -95708946 + RSINE1 SINE B4 61 163 -2 7 1359 680 280 171 56 chr1 101486607 101486982 -95708450 - MTC LTR MaLR -3 418 1 7 1359 22 0 0 0 chr1 101486983 101487005 -95708427 + AT_rich Low_complexity Low_complexity 1 22 0 7 1359 340 356 14 64 chr1 101487235 101487376 -95708056 + B4A SINE B4 9 142 -150 7 1359 2563 186 149 10 chr1 101487436 101488040 -95707392 + RLTR17 LTR ERVK 5 692 0 7 1359 23 33 0 0 chr1 101488111 101488141 -95707291 + AT_rich Low_complexity Low_complexity 1 30 0 7 1359 24 0 0 0 chr1 101488350 101488374 -95707058 + AT_rich Low_complexity Low_complexity 1 24 0 7 1359 27558 119 15 15 chr1 101488529 101492826 -95702606 - L1_Mus2 LINE L1 0 6566 2263 7 1359 1034 81 0 7 chr1 101492826 101492963 -95702469 + B1_Mus1 SINE Alu 1 136 -12 7 1359 513 44 0 0 chr1 101492964 101493032 -95702400 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 7 1359 702 0 0 0 chr1 101493039 101493117 -95702315 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 7 1359 27558 150 19 58 chr1 101493117 101494869 -95700563 - L1_Mus2 LINE L1 -3621 2262 152 7 1359 391 256 39 23 chr1 101494875 101495003 -95700429 - L1VL2 LINE L1 -6138 197 68 7 1359 754 263 5 56 chr1 101496240 101496437 -95698995 - B3A SINE B2 0 198 12 7 1359 2529 185 182 15 chr1 101497079 101497731 -95697701 - RMER12 LTR ERVK -200 1122 362 7 1359 525 242 49 40 chr1 101497731 101497900 -95697532 + RLTR20B2 LTR ERVK 1 185 -375 7 1359 605 359 20 5 chr1 101497899 101498098 -95697334 - B4A SINE B4 -85 207 6 7 1359 326 265 9 101 chr1 101498190 101498299 -95697133 + Lx8 LINE L1 7226 7324 -149 7 1359 232 356 99 0 chr1 101498669 101498770 -95696662 + MLT1J2 LTR MaLR 266 376 -72 7 1359 405 0 0 0 chr1 101499257 101499302 -95696130 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1359 549 44 0 0 chr1 101499340 101499408 -95696024 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1359 726 307 64 27 chr1 101499453 101499748 -95695684 - MTE2b LTR MaLR -46 333 28 7 1359 4221 50 0 4 chr1 101500400 101500924 -95694508 - L1Md_F2 LINE L1 -1 6581 6060 1 1359 510 271 0 0 chr1 101501281 101501403 -95694029 - ORR1E LTR MaLR -237 122 1 2 1359 450 0 0 0 chr1 101501803 101501853 -95693579 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1359 41 31 0 15 chr1 101502700 101502738 -95692694 + AT_rich Low_complexity Low_complexity 1 38 0 4 1359 1180 50 0 0 chr1 101502738 101502879 -95692553 - B1_Mm SINE Alu -5 142 2 5 1359 41 31 0 15 chr1 101502879 101502906 -95692526 + AT_rich Low_complexity Low_complexity 1 27 0 6 1359 1595 192 126 83 chr1 101503057 101503420 -95692012 - RLTR25B LTR ERVK 0 1103 714 7 1359 3811 111 7 5 chr1 101503420 101503982 -95691450 - Lx3_Mus LINE L1 0 7009 6447 8 1359 1595 192 126 83 chr1 101503982 101504054 -95691378 - RLTR25B LTR ERVK -390 713 649 7 1359 2911 74 11 0 chr1 101504054 101504434 -95690998 - L1_Mus1 LINE L1 0 6567 6184 9 1359 2034 86 0 0 chr1 101504434 101504703 -95690729 + L1_Mm LINE L1 5538 5806 -77 1 1359 2000 217 163 8 chr1 101504707 101505228 -95690204 - RLTR25B LTR ERVK -426 602 1 7 1359 239 269 10 61 chr1 101505228 101505327 -95690105 - Lx7 LINE L1 -44 7652 7559 1 1359 443 362 21 16 chr1 101505369 101505557 -95689875 + Lx9 LINE L1 7210 7398 -246 1 1359 520 259 100 42 chr1 101505881 101506157 -95689275 - RMER13A LTR ERVK -394 466 186 1 1359 528 202 79 12 chr1 101506393 101506558 -95688874 + Lx9 LINE L1 7466 7641 -3 1 1359 486 0 0 0 chr1 101506627 101506681 -95688751 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1359 279 0 0 0 chr1 101506700 101506731 -95688701 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1359 3626 100 40 29 chr1 101507696 101508253 -95687179 + RLTR13C2 LTR ERVK 1 563 -245 1 1359 610 157 0 0 chr1 101508238 101508340 -95687092 + RLTR13C2 LTR ERVK 801 902 0 1 1359 180 143 0 0 chr1 101509188 101509230 -95686202 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1359 3980 109 3 17 chr1 101509267 101509863 -95685569 - L1_Mus3 LINE L1 -3 6635 6048 1 1359 249 293 24 12 chr1 101510279 101510362 -95685070 - MER5A DNA MER1_type -105 84 1 1 1359 563 295 136 48 chr1 101510362 101510555 -95684877 - B4 SINE B4 -78 214 2 2 1359 243 0 0 0 chr1 101511603 101511630 -95683802 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1359 443 380 69 36 chr1 101511654 101511930 -95683502 - B4 SINE B4 -2 290 6 2 1359 206 163 0 23 chr1 101512172 101512216 -95683216 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1359 723 311 133 5 chr1 101512442 101512810 -95682622 - LTR48 LTR ERV1 -22 765 351 2 1359 23 0 0 0 chr1 101512887 101512910 -95682522 + AT_rich Low_complexity Low_complexity 1 23 0 2 1359 762 302 67 15 chr1 101513012 101513287 -95682145 + ORR1D1 LTR MaLR 3 312 -72 2 1359 233 210 16 0 chr1 101513293 101513355 -95682077 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1359 269 25 75 0 chr1 101513378 101513418 -95682014 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 2 1359 386 93 0 36 chr1 101513418 101513467 -95681965 + ORR1D1 LTR MaLR 337 384 0 2 1359 297 336 38 15 chr1 101513467 101513600 -95681832 - B4A SINE B4 -27 265 130 2 1359 283 271 9 119 chr1 101513861 101513970 -95681462 - LTR48B LTR ERV1 -547 97 1 3 1359 315 322 76 8 chr1 101515280 101515399 -95680033 - MLT1E LTR MaLR -32 621 495 3 1359 373 312 54 0 chr1 101515471 101515564 -95679868 + RSINE1 SINE B4 5 102 -63 3 1359 438 20 0 0 chr1 101515597 101515648 -95679784 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1359 3714 216 49 23 chr1 101515764 101516537 -95678895 - RMER13A LTR ERVK -52 808 16 3 1359 342 0 0 0 chr1 101516549 101516587 -95678845 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1359 231 377 61 8 chr1 101516795 101516926 -95678506 - Tigger5 DNA MER2_type -2266 140 3 3 1359 428 308 41 58 chr1 101516930 101517243 -95678189 + L1ME2 LINE L1 5700 6007 -235 3 1359 325 386 83 14 chr1 101517620 101517838 -95677594 + Lx8 LINE L1 7153 7385 -88 3 1359 2354 85 0 6 chr1 101518120 101518450 -95676982 + L1Md_F2 LINE L1 6255 6582 0 3 1359 7448 130 13 0 chr1 101518451 101519610 -95675822 + L1_Mm LINE L1 4378 5580 -600 4 1359 548 120 18 9 chr1 101519610 101519719 -95675713 + L1_Mus3 LINE L1 6524 6633 -5 4 1359 804 278 58 12 chr1 101519719 101519768 -95675664 + L1_Mm LINE L1 5581 5636 -544 4 1359 357 272 29 29 chr1 101520583 101520708 -95674724 + (TA)n Simple_repeat Simple_repeat 2 127 0 4 1359 579 29 0 0 chr1 101520708 101520777 -95674655 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 4 1359 357 272 29 29 chr1 101520777 101520825 -95674607 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1359 416 306 123 25 chr1 101521639 101521960 -95673472 + L1MD2 LINE L1 5519 5868 -311 4 1359 377 370 87 57 chr1 101521984 101522248 -95673184 + B4A SINE B4 1 272 -20 4 1359 30 77 0 0 chr1 101522579 101522644 -95672788 + AT_rich Low_complexity Low_complexity 1 65 0 4 1359 286 407 46 9 chr1 101523196 101523412 -95672020 + B4A SINE B4 6 229 -63 4 1359 6048 47 2 45 chr1 101523860 101524458 -95670974 - RLTR13C2 LTR ERVK -26 782 205 4 1359 1163 68 0 0 chr1 101524458 101524604 -95670828 + B1_Mus2 SINE Alu 1 146 -1 5 1359 6048 47 2 45 chr1 101524604 101524822 -95670610 - RLTR13C2 LTR ERVK -604 204 1 4 1359 604 294 45 6 chr1 101525021 101525199 -95670233 - B3 SINE B2 -30 186 2 5 1359 827 319 31 51 chr1 101525287 101525581 -95669851 + B4A SINE B4 5 292 0 5 1359 259 268 0 0 chr1 101526196 101526252 -95669180 + B4A SINE B4 9 64 -228 5 1359 405 145 0 0 chr1 101526644 101526720 -95668712 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1359 305 357 34 34 chr1 101526859 101527007 -95668425 + MTE-int LTR MaLR 1427 1574 -6 5 1359 633 27 0 0 chr1 101527425 101527500 -95667932 + (TTC)n Simple_repeat Simple_repeat 1 75 0 5 1359 1232 50 6 0 chr1 101527500 101527660 -95667772 + (TC)n Simple_repeat Simple_repeat 1 161 0 5 1359 2328 53 56 0 chr1 101527663 101527966 -95667466 + RLTR46 LTR ERVK 1 320 0 5 1359 414 0 0 0 chr1 101527982 101528028 -95667404 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1359 4635 139 55 23 chr1 101528034 101528856 -95666576 - Lx3C LINE L1 -7 6969 6122 6 1359 2188 148 0 6 chr1 101528856 101529222 -95666210 + L1_Mur1 LINE L1 4305 4668 -1218 6 1359 48 85 0 0 chr1 101529233 101529351 -95666081 + AT_rich Low_complexity Low_complexity 1 118 0 6 1359 687 25 0 0 chr1 101529407 101529488 -95665944 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1359 270 56 0 0 chr1 101529490 101529526 -95665906 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1359 718 328 80 78 chr1 101529531 101530140 -95665292 - Lx8 LINE L1 -396 7300 6700 6 1359 1843 200 22 87 chr1 101530148 101530427 -95665005 + RLTR9B2 LTR ERVK 1 261 -159 6 1359 1448 82 34 5 chr1 101530427 101530636 -95664796 + L1_Mus1 LINE L1 6353 6567 0 6 1359 1843 200 22 87 chr1 101530636 101530805 -95664627 + RLTR9B2 LTR ERVK 262 420 0 6 1359 993 331 61 21 chr1 101530832 101531395 -95664037 - Lx8 LINE L1 -796 6677 6061 6 1359 473 250 117 13 chr1 101531468 101531609 -95663823 - MTE2a LTR MaLR -14 407 222 6 1359 2499 102 19 45 chr1 101531609 101532031 -95663401 + IAPLTR2a LTR ERVK 1 411 0 6 1359 26 64 0 0 chr1 101532859 101532906 -95662526 + AT_rich Low_complexity Low_complexity 1 47 0 7 1359 307 276 26 13 chr1 101533088 101533165 -95662267 - B4 SINE B4 -171 121 44 7 1359 470 314 25 45 chr1 101533322 101533522 -95661910 - B3A SINE B2 0 198 3 7 1359 252 0 0 0 chr1 101533876 101533904 -95661528 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1359 564 276 16 8 chr1 101533906 101534034 -95661398 - B1_Mur4 SINE Alu -15 135 7 7 1359 712 268 31 17 chr1 101534051 101534260 -95661172 - B3A SINE B2 -2 214 6 7 1359 7316 86 14 0 chr1 101536927 101538076 -95657356 + L1_Mus2 LINE L1 5402 6562 -4 7 1359 1863 208 14 108 chr1 101539035 101539612 -95655820 - RLTR11A2 LTR ERVK -4 523 1 7 1359 2125 297 65 3 chr1 101539850 101540592 -95654840 - Lx6 LINE L1 -721 6739 5952 7 1359 7150 166 41 25 chr1 101540589 101542463 -95652969 - L1_Mus4 LINE L1 -3 6633 4738 7 1359 329 40 40 0 chr1 101542463 101542513 -95652919 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 8 1359 7150 171 5 16 chr1 101542513 101542677 -95652755 - L1_Mus4 LINE L1 -1146 4737 4573 7 1359 3944 74 27 29 chr1 101542686 101543242 -95652190 - L1_Mus1 LINE L1 -1 6566 6012 8 1359 2054 269 45 20 chr1 101543242 101543849 -95651583 + Lx6 LINE L1 6828 7449 -11 8 1359 625 338 50 65 chr1 101543893 101544295 -95651137 - MTD LTR MaLR -6 413 18 8 1359 1972 208 164 41 chr1 101544310 101544822 -95650610 + RMER15 LTR ERVL 1 575 0 8 1359 977 273 63 47 chr1 101545035 101545495 -95649937 - RLTR22_Mur LTR ERVK -789 615 1 8 1359 423 314 65 7 chr1 101545558 101545696 -95649736 - B3A SINE B2 -52 146 1 8 1359 459 87 0 0 chr1 101546107 101546176 -95649256 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1359 188 133 44 0 chr1 101546219 101546264 -95649168 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 8 1359 404 264 47 0 chr1 101546284 101546390 -95649042 - RSINE1 SINE B4 -31 134 24 8 1359 326 355 151 25 chr1 101546444 101547007 -95648425 - L1M5 LINE L1 -1706 4440 3807 9 1359 519 330 36 73 chr1 101547381 101547600 -95647832 - B3A SINE B2 -5 211 1 9 1359 4506 21 0 2 chr1 101547689 101548210 -95647222 + MERVL-int LTR ERVL 121 640 -4845 9 1359 323 374 28 28 chr1 101548622 101548801 -95646631 - B4A SINE B4 -112 180 2 9 1359 234 307 112 4 chr1 101548929 101549207 -95646225 + L1M4 LINE L1 905 1212 -5330 9 1359 316 352 104 0 chr1 101549262 101549387 -95646045 + RSINE1 SINE B4 13 150 -15 9 1359 431 323 107 32 chr1 101549479 101549824 -95645608 + L1M4 LINE L1 1238 1608 -4934 9 1359 232 48 23 23 chr1 101550041 101550084 -95645348 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 9 1359 873 265 25 17 chr1 101550513 101550743 -95644689 - ORR1A4 LTR MaLR -101 277 1 9 1359 435 331 11 63 chr1 101550744 101550918 -95644514 + B3 SINE B2 31 195 -21 9 1359 900 49 0 0 chr1 101550945 101551067 -95644365 + (TG)n Simple_repeat Simple_repeat 1 122 0 9 1359 288 375 34 20 chr1 101551069 101551216 -95644216 - B3 SINE B2 -67 149 1 1 1359 520 278 96 15 chr1 101551285 101551482 -95643950 + Tigger1 DNA MER2_type 2202 2414 -4 1 1359 252 86 0 0 chr1 101551536 101551571 -95643861 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1359 411 305 123 55 chr1 101551876 101552147 -95643285 - ORR1E LTR MaLR 0 370 40 1 1359 540 165 0 0 chr1 101552995 101553086 -95642346 - L1_Rod LINE L1 -151 5696 5606 1 1359 276 246 48 116 chr1 101553563 101553710 -95641722 - RLTR43A LTR ERVK 0 364 228 1 1359 10565 121 16 13 chr1 101554500 101556161 -95639271 - RMER16-int LTR ERVK -865 4541 2877 1 1359 315 0 0 0 chr1 101556163 101556198 -95639234 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1359 521 219 0 25 chr1 101556198 101556357 -95639075 + (TA)n Simple_repeat Simple_repeat 1 155 0 1 1359 6307 167 65 14 chr1 101556360 101557373 -95638059 - RMER16-int LTR ERVK -2537 2869 1819 1 1359 435 19 0 0 chr1 101557373 101557425 -95638007 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1359 6307 235 50 53 chr1 101557425 101558322 -95637110 - RMER16-int LTR ERVK -3588 1818 1415 1 1359 2875 122 44 17 chr1 101558440 101558465 -95636967 - RMER16-int LTR ERVK -3869 1537 1513 1 1359 1731 182 101 76 chr1 101558465 101558900 -95636532 - RLTR41 LTR ERV1 0 446 1 1 1359 2875 125 106 20 chr1 101558900 101559653 -95635779 - RMER16-int LTR ERVK -3894 1512 703 1 1359 489 34 0 0 chr1 101559653 101559712 -95635720 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 1359 2777 129 61 24 chr1 101559712 101559891 -95635541 - RMER16-int LTR ERVK -4704 702 508 1 1359 3622 166 171 34 chr1 101559891 101560755 -95634677 + RLTR13C1 LTR ERVK 1 983 0 1 1359 419 97 42 0 chr1 101560757 101560829 -95634603 - RMER16-int LTR ERVK -4917 489 415 1 1359 629 306 93 65 chr1 101560881 101561203 -95634229 + Lx8 LINE L1 7021 7351 -122 1 1359 27 49 0 0 chr1 101561298 101561339 -95634093 + AT_rich Low_complexity Low_complexity 1 41 0 1 1359 201 178 0 0 chr1 101561339 101561384 -95634048 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1359 21 0 0 0 chr1 101561460 101561481 -95633951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1359 525 261 42 48 chr1 101561688 101561853 -95633579 - Lx8 LINE L1 -534 6939 6776 1 1359 22 35 0 0 chr1 101562045 101562074 -95633358 + AT_rich Low_complexity Low_complexity 1 29 0 1 1359 1205 348 42 42 chr1 101562929 101563733 -95631699 - Lx8 LINE L1 -148 7325 6522 1 1359 233 348 60 9 chr1 101563798 101563914 -95631518 - Lx8 LINE L1 -1073 6400 6279 1 1359 789 152 136 25 chr1 101563952 101564114 -95631318 + B2_Mm2 SINE B2 4 183 -12 1 1359 1110 314 164 40 chr1 101564159 101565247 -95630185 - Lx8 LINE L1 -1207 6266 5044 1 1359 2285 303 63 34 chr1 101565246 101565717 -95629715 - Lx8 LINE L1 -1644 4236 3753 1 1359 4487 161 100 8 chr1 101565717 101566594 -95628838 - RMER17B LTR ERVK 0 958 1 1 1359 2285 303 63 34 chr1 101566594 101566690 -95628742 - Lx8 LINE L1 -2128 3752 3653 1 1359 277 24 48 0 chr1 101566690 101566732 -95628700 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1 1359 2285 303 63 34 chr1 101566732 101567712 -95627720 - Lx8 LINE L1 -2228 3652 2644 1 1359 290 253 103 21 chr1 101567954 101568051 -95627381 - MTE2b LTR MaLR -12 367 263 1 1359 1084 313 22 0 chr1 101568150 101568428 -95627004 - MTE2b LTR MaLR -95 284 1 1 1359 201 74 0 0 chr1 101569269 101569296 -95626136 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1359 1481 141 27 145 chr1 101569414 101569780 -95625652 - RLTR23 LTR ERV1 0 430 108 1 1359 254 68 0 43 chr1 101569822 101569868 -95625564 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 1 1359 395 125 194 0 chr1 101569902 101569974 -95625458 - RLTR23 LTR ERV1 -330 100 15 1 1359 3923 65 12 19 chr1 101570033 101570549 -95624883 - RLTR1B LTR ERV1 0 512 1 1 1359 258 164 25 76 chr1 101570619 101570698 -95624734 + RMER1A Other Other 820 894 -136 1 1359 322 70 51 34 chr1 101570834 101570886 -95624546 + RLTR25A LTR ERVK 442 494 -609 1 1359 1438 266 110 36 chr1 101570886 101571412 -95624020 + RMER2 LTR ERV1 1 565 -2 1 1359 3931 116 9 122 chr1 101571413 101572258 -95623174 + RMER17A LTR ERVK 1 750 -1 1 1359 1480 214 71 16 chr1 101572265 101572660 -95622772 + RLTR25A LTR ERVK 450 856 -247 1 1359 227 146 104 0 chr1 101572726 101572774 -95622658 + U7 snRNA snRNA 8 60 -3 1 1359 501 281 118 59 chr1 101572854 101573119 -95622313 + RLTR25A LTR ERVK 743 1100 -3 1 1359 896 202 74 0 chr1 101573618 101573781 -95621651 - RLTR41 LTR ERV1 0 446 272 1 1359 2899 88 29 0 chr1 101573783 101574192 -95621240 - L1_Mus3 LINE L1 0 6638 6218 1 1359 2513 74 0 0 chr1 101574192 101574517 -95620915 + L1_Mus3 LINE L1 5610 5934 -704 1 1359 1806 103 55 4 chr1 101574517 101574789 -95620643 - RLTR41 LTR ERV1 -160 286 1 1 1359 446 272 30 54 chr1 101575193 101575360 -95620072 + RMER15 LTR ERVL 31 193 -382 1 1359 789 123 0 0 chr1 101575842 101575980 -95619452 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 1359 438 20 0 0 chr1 101575980 101576030 -95619402 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1359 414 284 130 59 chr1 101576050 101576304 -95619128 - B4 SINE B4 -18 274 3 1 1359 385 341 41 0 chr1 101577093 101577216 -95618216 + B3A SINE B2 1 128 -70 1 1359 838 150 5 144 chr1 101577222 101577424 -95618008 - ORR1B2 LTR MaLR -193 174 1 1 1359 523 306 61 30 chr1 101578051 101578216 -95617216 + B3A SINE B2 5 174 -24 1 1359 462 36 0 0 chr1 101578226 101578282 -95617150 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1359 321 26 0 0 chr1 101578282 101578319 -95617113 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1359 740 329 14 30 chr1 101578520 101578815 -95616617 + B4A SINE B4 1 290 -2 1 1359 192 77 0 0 chr1 101579910 101579936 -95615496 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1359 23 0 0 0 chr1 101580462 101580485 -95614947 + AT_rich Low_complexity Low_complexity 1 23 0 1 169 5164 39 0 2 chr1 101580485 101581104 -95614328 - L1Md_F2 LINE L1 -2 6580 5963 1 1360 512 246 41 0 chr1 101581393 101581515 -95613917 - RSINE1 SINE B4 -19 146 20 1 1360 992 289 20 58 chr1 101581717 101582059 -95613373 - Lx6 LINE L1 -26 7434 7106 1 1360 378 346 57 101 chr1 101582153 101582317 -95613115 + B4A SINE B4 10 166 -126 1 1360 227 31 31 0 chr1 101582317 101582349 -95613083 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1360 378 346 57 101 chr1 101582349 101582480 -95612952 + B4A SINE B4 167 291 -1 1 1360 209 146 21 0 chr1 101582558 101582606 -95612826 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1360 321 284 52 12 chr1 101582621 101582775 -95612657 + MTD LTR MaLR 18 180 -241 1 1360 300 200 0 14 chr1 101582775 101582846 -95612586 - Lx4A LINE L1 -633 6425 6356 1 1360 717 237 25 40 chr1 101582840 101583038 -95612394 + Lx4B LINE L1 6860 7054 -4 1 1360 682 286 12 12 chr1 101583054 101583227 -95612205 + MTD LTR MaLR 100 272 -147 1 1360 422 282 36 0 chr1 101583724 101583834 -95611598 + RSINE1 SINE B4 12 125 -40 1 1360 342 0 0 0 chr1 101583882 101583920 -95611512 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1360 1213 211 123 4 chr1 101583951 101584212 -95611220 + RMER6D LTR ERVK 425 716 -4 1 1360 410 337 25 71 chr1 101584418 101584616 -95610816 - B3 SINE B2 -26 190 2 1 1360 27 29 0 0 chr1 101585527 101585561 -95609871 + AT_rich Low_complexity Low_complexity 1 34 0 1 1360 224 234 0 15 chr1 101585929 101585940 -95609492 + (TA)n Simple_repeat Simple_repeat 2 12 0 1 1360 531 82 0 0 chr1 101585940 101586013 -95609419 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1360 224 234 0 15 chr1 101586013 101586066 -95609366 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1360 218 359 21 42 chr1 101586149 101586245 -95609187 + B4 SINE B4 4 97 -195 1 1360 1264 252 13 82 chr1 101587798 101588178 -95607254 + MTE2b LTR MaLR 22 375 -4 1 1360 191 61 30 0 chr1 101588371 101588404 -95607028 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 1 1360 259 204 52 41 chr1 101589180 101589277 -95606155 - Lx9 LINE L1 -7 7637 7540 1 1360 228 315 90 25 chr1 101589487 101589731 -95605701 - L1MB4 LINE L1 -39 6141 5882 1 1360 21 0 0 0 chr1 101590368 101590389 -95605043 + AT_rich Low_complexity Low_complexity 1 21 0 1 1360 475 353 11 60 chr1 101590389 101590483 -95604949 - B3A SINE B2 -22 176 82 1 1360 4615 80 0 3 chr1 101590483 101591101 -95604331 - L1Md_F2 LINE L1 0 6582 5967 1 1360 475 353 11 60 chr1 101591101 101591190 -95604242 - B3A SINE B2 -117 81 2 1 1360 394 222 20 13 chr1 101591344 101591450 -95603982 + B1_Mur4 SINE Alu 6 143 -7 1 1360 1641 148 26 67 chr1 101592032 101592373 -95603059 + ORR1A4 LTR MaLR 1 327 -2 1 1360 817 343 24 50 chr1 101592721 101592965 -95602467 - B4A SINE B4 0 292 53 1 1360 1571 238 49 45 chr1 101592965 101593516 -95601916 + RLTR31_Mur LTR ERVK 1 553 0 1 1360 817 343 24 50 chr1 101593516 101593569 -95601863 - B4A SINE B4 -240 52 3 1 1360 351 320 82 0 chr1 101593901 101594023 -95601409 + B3A SINE B2 1 132 -66 1 1360 255 103 0 0 chr1 101594057 101594096 -95601336 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 1360 408 344 116 14 chr1 101594099 101594314 -95601118 - B4A SINE B4 -18 274 38 1 1360 288 298 123 83 chr1 101594468 101594768 -95600664 + RMER12 LTR ERVK 711 1022 -300 1 1360 239 324 14 0 chr1 101594759 101594833 -95600599 - ID SINE ID -141 83 9 1 1360 187 384 12 0 chr1 101595377 101595463 -95599969 - L2a LINE L2 -2 3424 3338 1 1360 22 70 0 0 chr1 101596041 101596084 -95599348 + AT_rich Low_complexity Low_complexity 1 43 0 1 1360 246 132 0 0 chr1 101597184 101597237 -95598195 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1360 703 310 110 11 chr1 101597266 101597530 -95597902 - B4 SINE B4 -2 290 1 1 1360 8074 38 0 0 chr1 101598232 101599489 -95595943 - L1Md_T LINE L1 0 6582 5326 1 1360 659 25 0 0 chr1 101599487 101599568 -95595864 + L1Md_T LINE L1 5236 5316 -567 1 1360 444 355 47 33 chr1 101599682 101599956 -95595476 + B4 SINE B4 2 279 -13 1 1360 432 0 0 0 chr1 101599968 101600016 -95595416 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1360 766 351 37 7 chr1 101600346 101600616 -95594816 - B4 SINE B4 -7 285 8 1 1360 498 271 0 15 chr1 101601248 101601383 -95594049 + B1_Mur4 SINE Alu 5 137 -13 1 1360 989 323 11 43 chr1 101601416 101601495 -95593937 + B4 SINE B4 14 86 -206 1 1360 522 0 0 0 chr1 101601495 101601553 -95593879 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 1 1360 989 323 11 43 chr1 101601553 101601754 -95593678 + B4 SINE B4 87 285 -7 1 1360 314 304 26 98 chr1 101603024 101603177 -95592255 + RMER15 LTR ERVL 8 149 -426 1 1360 712 312 58 14 chr1 101603184 101603460 -95591972 + RMER15 LTR ERVL 274 561 -14 1 1360 686 203 65 13 chr1 101603534 101603689 -95591743 - RLTR25B LTR ERVK -865 163 1 1 1360 429 20 0 0 chr1 101604428 101604478 -95590954 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1360 566 328 14 14 chr1 101605778 101605944 -95589488 + B3A SINE B2 2 177 -39 1 1360 201 94 0 0 chr1 101605944 101605976 -95589456 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1360 422 340 83 49 chr1 101605976 101606013 -95589419 + B3 SINE B2 178 212 -4 1 1360 710 211 29 73 chr1 101606013 101606218 -95589214 - Lx7 LINE L1 -303 7393 7198 2 1360 1282 259 37 20 chr1 101606214 101606568 -95588864 + Lx7 LINE L1 6809 7168 -528 2 1360 231 323 37 59 chr1 101606593 101606728 -95588704 - MTEa LTR MaLR -64 315 184 2 1360 217 217 33 0 chr1 101606869 101606929 -95588503 + T-rich Low_complexity Low_complexity 4 65 0 2 1360 209 83 0 27 chr1 101607564 101607601 -95587831 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1360 276 326 88 27 chr1 101608346 101608494 -95586938 - B4 SINE B4 -27 265 109 2 1360 239 172 0 44 chr1 101608807 101608898 -95586534 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 2 1360 414 57 0 0 chr1 101610983 101611036 -95584396 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1360 244 375 94 46 chr1 101611041 101611333 -95584099 - B4 SINE B4 -13 279 1 2 1360 3177 218 57 35 chr1 101611743 101612533 -95582899 + RLTR40 LTR ERVK 1 807 -10 2 1360 589 309 73 28 chr1 101612565 101612882 -95582550 - RMER5 LTR ERV1 -132 402 72 2 1360 250 303 0 124 chr1 101612900 101613013 -95582419 - B3 SINE B2 -1 215 117 2 1360 230 296 12 0 chr1 101613012 101613093 -95582339 - ORR1E LTR MaLR -125 234 153 2 1360 1641 278 99 7 chr1 101613412 101613962 -95581470 - Lx6 LINE L1 -15 7445 6847 2 1360 508 155 0 0 chr1 101613967 101614051 -95581381 - Lx LINE L1 -607 6047 5964 2 1360 441 36 0 0 chr1 101614200 101614255 -95581177 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1360 267 376 0 0 chr1 101614392 101614501 -95580931 + MIRb SINE MIR 93 201 -67 2 1360 922 251 156 12 chr1 101614787 101615114 -95580318 + ORR1D1 LTR MaLR 1 374 0 2 1360 423 0 0 0 chr1 101615256 101615303 -95580129 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1360 1748 75 27 23 chr1 101615303 101615563 -95579869 - L1_Mus2 LINE L1 -3 6563 6303 2 1360 598 290 41 12 chr1 101615563 101615734 -95579698 + B3A SINE B2 11 186 -12 2 1360 522 0 0 0 chr1 101616028 101616086 -95579346 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1360 387 306 58 58 chr1 101616264 101616455 -95578977 - ORR1E LTR MaLR -168 191 1 2 1360 323 323 40 80 chr1 101616455 101616578 -95578854 + MLT1A1 LTR MaLR 57 172 -236 2 1360 1072 262 54 33 chr1 101616578 101616913 -95578519 - MTE2b LTR MaLR 0 379 38 2 1360 876 332 55 46 chr1 101616981 101617439 -95577993 + MT2A LTR ERVL 72 533 0 2 1360 23 0 0 0 chr1 101617622 101617645 -95577787 + AT_rich Low_complexity Low_complexity 1 23 0 2 1360 310 331 37 134 chr1 101617819 101618035 -95577397 + ID_B1 SINE B4 30 224 0 2 1360 2169 102 64 9 chr1 101618413 101618759 -95576673 - L1_Mus3 LINE L1 -8 6630 6266 2 1360 792 268 180 6 chr1 101619291 101619607 -95575825 + MTEb LTR MaLR 3 373 -6 2 1360 662 287 31 26 chr1 101619839 101620032 -95575400 + B3A SINE B2 5 198 0 2 1360 324 0 0 0 chr1 101620272 101620308 -95575124 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1360 461 218 35 0 chr1 101620373 101620460 -95574972 - B3A SINE B2 -107 91 2 2 1360 447 68 0 0 chr1 101620567 101620626 -95574806 + (TTG)n Simple_repeat Simple_repeat 2 60 0 2 1360 237 132 0 0 chr1 101620673 101620711 -95574721 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 2 1360 294 347 100 40 chr1 101620945 101621335 -95574097 - MLT2B1 LTR ERVL -5 562 52 2 1360 421 339 15 8 chr1 101621383 101621514 -95573918 + B4 SINE B4 151 282 -10 2 1360 300 172 0 0 chr1 101621569 101621627 -95573805 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1360 243 146 0 0 chr1 101621722 101621763 -95573669 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1360 1886 284 12 14 chr1 101621917 101622428 -95573004 + RMER5 LTR ERV1 23 532 -2 2 1360 1564 170 28 7 chr1 101622830 101623121 -95572311 + RMER20A LTR ERVK 11 307 -209 2 1360 26 30 0 0 chr1 101623181 101623214 -95572218 + AT_rich Low_complexity Low_complexity 1 33 0 2 1360 238 322 139 13 chr1 101623936 101624087 -95571345 + Lx8 LINE L1 6961 7130 -343 2 1360 1061 84 28 0 chr1 101624858 101625001 -95570431 - B1_Mus2 SINE Alu 0 147 1 2 1360 611 209 0 34 chr1 101625054 101625173 -95570259 + B3A SINE B2 5 119 -79 2 1360 3922 148 5 17 chr1 101626233 101626888 -95568544 - Lx2 LINE L1 0 6997 6351 2 1360 1438 58 0 0 chr1 101626888 101627062 -95568370 + L1Md_F2 LINE L1 5413 5586 -297 2 1360 8188 38 3 8 chr1 101627063 101628063 -95567369 + L1Md_F2 LINE L1 5588 6582 0 2 1360 2628 173 35 20 chr1 101628067 101628574 -95566858 - Lx2 LINE L1 -656 6341 5827 2 1360 183 100 0 0 chr1 101628574 101628604 -95566828 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1360 3092 177 18 5 chr1 101628620 101629193 -95566239 + L1_Mm LINE L1 5217 5796 -87 2 1360 533 326 34 50 chr1 101629374 101629613 -95565819 + B4A SINE B4 50 284 -8 2 1360 564 230 0 0 chr1 101630149 101630249 -95565183 - RSINE1 SINE B4 -54 111 12 2 1360 2175 260 42 25 chr1 101630580 101631179 -95564253 - Lx5 LINE L1 -66 6984 6376 2 1360 769 250 34 60 chr1 101631150 101631418 -95564014 - Lx5 LINE L1 -777 6273 6013 2 1360 1047 54 0 8 chr1 101631496 101631627 -95563805 - L1Md_T LINE L1 -370 6212 6083 2 1360 2017 55 0 0 chr1 101631612 101631865 -95563567 + L1Md_F2 LINE L1 6223 6475 -107 2 1360 462 18 0 0 chr1 101631865 101631920 -95563512 + (A)n Simple_repeat Simple_repeat 1 55 0 2 1360 215 361 23 57 chr1 101632163 101632251 -95563181 + RSINE1 SINE B4 57 141 -24 2 1360 277 318 102 16 chr1 101632874 101633002 -95562430 + RMER15 LTR ERVL 294 432 -143 2 1360 201 147 0 0 chr1 101633004 101633038 -95562394 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 2 1360 690 146 6 24 chr1 101633480 101633603 -95561829 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 1360 432 0 0 0 chr1 101633603 101633651 -95561781 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1360 690 146 6 24 chr1 101633651 101633695 -95561737 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1360 322 215 15 0 chr1 101633797 101633927 -95561505 + (CA)n Simple_repeat Simple_repeat 1 132 0 2 1360 223 160 19 39 chr1 101633939 101633991 -95561441 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 2 1360 2955 116 37 9 chr1 101634048 101634511 -95560921 - Lx LINE L1 0 6654 6179 2 1360 284 102 0 63 chr1 101634747 101634810 -95560622 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1360 504 111 0 0 chr1 101634987 101635068 -95560364 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1360 270 271 0 50 chr1 101635116 101635217 -95560215 + CT-rich Low_complexity Low_complexity 2 97 0 2 1360 217 333 46 0 chr1 101636368 101636455 -95558977 + B4A SINE B4 2 92 -200 2 1360 399 260 37 85 chr1 101636572 101636761 -95558671 - RNLTR23 LTR ERVK 0 642 463 2 1360 382 157 12 12 chr1 101637144 101637228 -95558204 + (TAG)n Simple_repeat Simple_repeat 3 86 0 2 1360 2159 117 39 3 chr1 101638242 101638576 -95556856 - MTB LTR MaLR -54 346 1 2 1360 2915 148 56 13 chr1 101638576 101639130 -95556302 - MTB-int LTR MaLR 0 1098 521 2 1360 2177 61 18 0 chr1 101639743 101640022 -95555410 - L1_Mus1 LINE L1 0 6567 6284 2 1360 965 114 8 0 chr1 101640254 101640386 -95555046 + B1_Mus1 SINE Alu 4 136 -12 2 1360 315 0 0 0 chr1 101640387 101640422 -95555010 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1360 236 390 26 95 chr1 101640821 101641011 -95554421 + B4A SINE B4 57 233 -59 2 1360 384 267 62 74 chr1 101641099 101641261 -95554171 - HAL1-3A_ME LINE L1 -422 2436 2277 2 1360 206 263 9 57 chr1 101641269 101641374 -95554058 + CT-rich Low_complexity Low_complexity 3 102 0 2 1360 303 309 83 35 chr1 101641389 101641533 -95553899 - HAL1-3A_ME LINE L1 -424 2434 2284 2 1360 209 250 27 27 chr1 101641535 101641609 -95553823 + CT-rich Low_complexity Low_complexity 2 75 0 2 1360 214 296 40 53 chr1 101642706 101642781 -95552651 + B4A SINE B4 23 96 -196 2 1360 371 272 0 0 chr1 101642785 101642866 -95552566 + B3 SINE B2 2 82 -134 2 1360 305 100 20 0 chr1 101642872 101642922 -95552510 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1360 2341 125 16 21 chr1 101643505 101643889 -95551543 + Lx LINE L1 6265 6646 -8 2 1360 335 222 17 17 chr1 101643986 101644105 -95551327 + (CATA)n Simple_repeat Simple_repeat 4 122 0 2 1360 2882 202 72 22 chr1 101644117 101644827 -95550605 + RLTR22_Mur LTR ERVK 5 749 -1099 2 1360 1246 83 61 0 chr1 101645085 101645266 -95550166 + L1Md_F2 LINE L1 6379 6570 -12 2 1360 438 146 0 0 chr1 101645692 101645774 -95549658 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1360 353 313 145 13 chr1 101646299 101646451 -95548981 + B3A SINE B2 7 178 -20 2 1360 208 0 0 59 chr1 101646608 101646642 -95548790 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1360 263 341 36 36 chr1 101646946 101647083 -95548349 + MLT1D LTR MaLR 323 459 -46 2 1360 463 239 1 2 chr1 101647109 101647205 -95548227 + B4 SINE B4 1 96 -69 2 1360 399 55 40 27 chr1 101647205 101647280 -95548152 + (CAAAAA)n Simple_repeat Simple_repeat 3 78 0 2 1360 302 273 39 0 chr1 101647283 101647360 -95548072 + B4A SINE B4 84 163 -129 2 1360 618 58 0 0 chr1 101647367 101647454 -95547978 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1360 597 332 56 31 chr1 101647912 101648232 -95547200 - Lx8 LINE L1 -2 7471 7144 2 1360 534 235 25 16 chr1 101648258 101648379 -95547053 - Lx8 LINE L1 -388 7085 6964 2 1360 219 88 0 0 chr1 101648426 101648460 -95546972 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1360 249 298 24 0 chr1 101648851 101648935 -95546497 + MLT1A1 LTR MaLR 300 385 -23 2 1360 433 313 68 0 chr1 101649206 101649369 -95546063 - MT2A LTR ERVL -2 531 358 2 1360 424 259 35 65 chr1 101649517 101649686 -95545746 - RLTR43A LTR ERVK 0 364 201 2 1360 590 280 8 0 chr1 101650177 101650302 -95545130 - RSINE1 SINE B4 -36 129 4 2 1360 432 55 0 0 chr1 101650858 101650913 -95544519 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1360 537 341 19 26 chr1 101650916 101651187 -95544245 - B4A SINE B4 -19 273 5 3 1360 586 342 42 52 chr1 101653003 101653290 -95542142 + B4A SINE B4 9 292 0 3 1360 297 0 0 0 chr1 101653917 101653950 -95541482 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1360 1584 5 0 0 chr1 101654316 101654500 -95540932 - L1Md_T LINE L1 0 6582 6399 3 1360 411 279 37 98 chr1 101654544 101654645 -95540787 + B3 SINE B2 64 152 -64 3 1360 579 15 0 0 chr1 101654645 101654713 -95540719 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 1360 411 279 37 98 chr1 101654713 101654774 -95540658 + B3 SINE B2 153 216 0 3 1360 6744 132 19 5 chr1 101655192 101656379 -95539053 + Lx LINE L1 5449 6650 -4 3 1360 765 309 39 0 chr1 101656381 101656588 -95538844 - MTE2b LTR MaLR -164 215 1 3 1360 208 227 0 0 chr1 101657844 101657888 -95537544 + CT-rich Low_complexity Low_complexity 1 44 0 3 1360 189 0 0 0 chr1 101658377 101658398 -95537034 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1360 396 0 0 0 chr1 101658441 101658485 -95536947 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1360 582 330 26 20 chr1 101659242 101659437 -95535995 + B4A SINE B4 97 292 0 3 1360 6963 49 21 6 chr1 101659618 101660506 -95534926 + L1Md_F2 LINE L1 5680 6581 -1 3 1360 272 273 99 91 chr1 101660684 101660805 -95534627 + B4A SINE B4 2 123 -169 3 1360 471 18 0 0 chr1 101661011 101661067 -95534365 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1360 414 0 0 0 chr1 101661067 101661112 -95534320 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1360 368 392 24 24 chr1 101661189 101661359 -95534073 - B4A SINE B4 -122 170 1 3 1360 509 336 0 0 chr1 101661359 101661504 -95533928 - B4A SINE B4 -65 227 83 3 1360 249 33 0 0 chr1 101661794 101661824 -95533608 + (CAAAG)n Simple_repeat Simple_repeat 1 30 0 3 1360 25 31 0 0 chr1 101662615 101662647 -95532785 + AT_rich Low_complexity Low_complexity 1 32 0 3 1360 1461 145 150 10 chr1 101662709 101663015 -95532417 + Lx2 LINE L1 6648 6996 -1 3 1360 198 167 0 0 chr1 101663259 101663295 -95532137 + CT-rich Low_complexity Low_complexity 6 41 0 3 1360 225 250 0 0 chr1 101663295 101663339 -95532093 + (CGTG)n Simple_repeat Simple_repeat 2 45 0 3 1360 290 167 0 16 chr1 101664598 101664659 -95530773 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1360 36 0 0 0 chr1 101665580 101665616 -95529816 + AT_rich Low_complexity Low_complexity 1 36 0 3 1360 1153 51 0 0 chr1 101665629 101665767 -95529665 - B1_Mm SINE Alu -8 139 2 3 1360 638 122 9 0 chr1 101666313 101666420 -95529012 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 3 1360 483 332 50 30 chr1 101666447 101666646 -95528786 - ID_B1 SINE B4 -21 203 1 3 1360 26 50 0 0 chr1 101666751 101666791 -95528641 + AT_rich Low_complexity Low_complexity 1 40 0 3 1360 494 294 53 101 chr1 101666805 101667032 -95528400 + B3 SINE B2 1 216 0 3 1360 963 97 17 0 chr1 101668539 101668715 -95526717 + (GA)n Simple_repeat Simple_repeat 1 179 0 3 1360 240 190 0 49 chr1 101668720 101668781 -95526651 + GA-rich Low_complexity Low_complexity 1 58 0 3 1360 247 186 0 33 chr1 101670383 101670444 -95524988 + T-rich Low_complexity Low_complexity 1 59 0 3 1360 222 150 0 0 chr1 101673846 101673886 -95521546 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1360 189 175 0 0 chr1 101675060 101675100 -95520332 + A-rich Low_complexity Low_complexity 1 40 0 3 1360 2992 40 8 0 chr1 101675101 101675471 -95519961 + L1Md_F3 LINE L1 6211 6583 -1 3 1360 525 293 7 91 chr1 101676207 101676361 -95519071 - B3 SINE B2 -11 205 65 3 1360 468 77 0 0 chr1 101676408 101676473 -95518959 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1360 348 250 23 23 chr1 101676544 101676630 -95518802 - B4 SINE B4 -206 86 1 3 1360 355 356 17 0 chr1 101677502 101677617 -95517815 + B4A SINE B4 2 118 -174 3 1360 227 284 37 0 chr1 101678474 101678555 -95516877 + CT-rich Low_complexity Low_complexity 1 84 0 3 1360 1315 311 27 5 chr1 101680007 101680376 -95515056 + MTE2b LTR MaLR 1 377 -2 3 1360 3056 85 0 51 chr1 101681088 101681557 -95513875 - L1Md_F2 LINE L1 -4 6578 6134 3 1360 371 332 110 82 chr1 101681788 101682070 -95513362 - B4 SINE B4 0 292 3 3 1360 290 301 32 16 chr1 101682327 101682452 -95512980 - L1MA6 LINE L1 -15 6285 6159 3 1360 248 241 35 24 chr1 101682460 101682545 -95512887 + L1MA6 LINE L1 6056 6141 -159 3 1360 23 0 0 0 chr1 101683489 101683512 -95511920 + AT_rich Low_complexity Low_complexity 1 23 0 3 1360 287 328 199 0 chr1 101684543 101684674 -95510758 + RSINE1 SINE B4 9 165 0 3 1360 2576 178 11 0 chr1 101684774 101685230 -95510202 + Lx2 LINE L1 6537 6997 0 3 1360 417 177 0 0 chr1 101685313 101685392 -95510040 + (TAA)n Simple_repeat Simple_repeat 2 80 0 3 1360 369 0 0 0 chr1 101685614 101685655 -95509777 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1360 517 312 100 62 chr1 101685673 101686048 -95509384 - Lx8 LINE L1 -34 7439 7039 3 1360 229 299 93 0 chr1 101686053 101686160 -95509272 + Lx8 LINE L1 6360 6476 -997 3 1360 498 316 117 36 chr1 101686203 101686561 -95508871 - MT2A LTR ERVL -146 387 1 3 1360 492 18 0 0 chr1 101686720 101686777 -95508655 + (T)n Simple_repeat Simple_repeat 1 57 0 3 1360 180 0 0 0 chr1 101687708 101687728 -95507704 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1360 511 322 23 82 chr1 101688461 101688681 -95506751 + B3A SINE B2 5 211 -5 3 1360 750 60 0 0 chr1 101689282 101689382 -95506050 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1360 11315 73 7 9 chr1 101689460 101691655 -95503777 - L1Md_F2 LINE L1 -5 6577 4382 3 1360 1336 64 3 13 chr1 101691658 101691958 -95503474 + (GAAA)n Simple_repeat Simple_repeat 1 297 0 3 1360 578 288 7 0 chr1 101692649 101692788 -95502644 - B1_Mus2 SINE Alu -1 146 7 3 1360 606 318 129 46 chr1 101692989 101693315 -95502117 - ORR1E LTR MaLR -6 353 1 3 1360 292 333 104 0 chr1 101693817 101693961 -95501471 - Lx8 LINE L1 -142 7331 7173 3 1360 326 292 123 0 chr1 101693996 101694126 -95501306 - Lx8 LINE L1 -359 7114 6969 3 1360 270 0 0 0 chr1 101694131 101694161 -95501271 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1360 481 308 6 30 chr1 101694215 101694379 -95501053 - Lx8 LINE L1 -646 6827 6668 3 1360 316 16 29 73 chr1 101694390 101694458 -95500974 + (TTTTTG)n Simple_repeat Simple_repeat 3 67 0 3 1360 208 351 0 0 chr1 101694700 101694757 -95500675 - MIRc SINE MIR -190 78 22 3 1360 21 0 0 0 chr1 101695406 101695427 -95500005 + AT_rich Low_complexity Low_complexity 1 21 0 3 1360 2278 266 77 6 chr1 101695743 101696366 -95499066 - Lx6 LINE L1 0 7460 6794 3 1360 284 200 0 0 chr1 101696357 101696422 -95499010 + L1_Mur3 LINE L1 4586 4650 -1230 3 1360 1370 74 0 5 chr1 101696430 101696620 -95498812 + L1_Mus1 LINE L1 6379 6567 0 3 1360 351 324 73 40 chr1 101696744 101696895 -95498537 - B3A SINE B2 -42 156 1 3 1360 30 27 0 0 chr1 101697163 101697200 -95498232 + AT_rich Low_complexity Low_complexity 1 37 0 3 1360 312 137 0 0 chr1 101697905 101697956 -95497476 + (TCTCCC)n Simple_repeat Simple_repeat 3 53 0 3 1360 508 101 22 0 chr1 101697958 101698047 -95497385 + (TATG)n Simple_repeat Simple_repeat 4 94 0 3 1360 286 354 0 8 chr1 101698065 101698261 -95497171 + (TG)n Simple_repeat Simple_repeat 1 194 0 3 1360 588 234 9 0 chr1 101699849 101699956 -95495476 - RSINE1 SINE B4 -40 125 18 3 1360 2043 333 45 27 chr1 101699984 101700922 -95494510 - Lx8 LINE L1 -181 7292 6338 3 1360 1549 294 45 30 chr1 101700936 101701682 -95493750 + Lx8 LINE L1 5533 6297 -1176 3 1360 671 281 132 36 chr1 101701682 101701764 -95493668 - Tigger6b DNA MER2_type -142 1455 1371 3 1360 2478 73 9 0 chr1 101701764 101702093 -95493339 - L1_Mus1 LINE L1 -1 6566 6235 3 1360 671 281 132 36 chr1 101702093 101702375 -95493057 - Tigger6b DNA MER2_type -227 1370 1057 3 1360 248 391 9 9 chr1 101702404 101702520 -95492912 - Lx8 LINE L1 -116 7357 7242 3 1360 291 331 72 32 chr1 101702682 101702807 -95492625 - MTEa LTR MaLR -3 376 247 3 1360 529 304 17 76 chr1 101702845 101703053 -95492379 + B3A SINE B2 11 202 -14 3 1360 198 103 0 0 chr1 101703053 101703082 -95492350 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1360 506 319 9 113 chr1 101703082 101703103 -95492329 + B3 SINE B2 203 216 0 3 1360 233 355 64 80 chr1 101703114 101703301 -95492131 - MTEa LTR MaLR -161 209 26 3 1360 564 310 119 62 chr1 101703657 101703901 -95491531 - B4 SINE B4 -6 286 29 3 1360 24 0 0 0 chr1 101706011 101706035 -95489397 + AT_rich Low_complexity Low_complexity 1 24 0 3 1360 916 62 8 0 chr1 101707089 101707219 -95488213 - L1_Mus2 LINE L1 0 6566 6436 3 1360 300 315 139 74 chr1 101707844 101708060 -95487372 - B4 SINE B4 -20 272 43 3 1360 1073 143 0 50 chr1 101708840 101709039 -95486393 + B2_Mm2 SINE B2 1 189 -6 3 1360 915 308 113 30 chr1 101709365 101710203 -95485229 - L1MD1 LINE L1 -56 6186 5279 3 1360 496 311 128 49 chr1 101710408 101711023 -95484409 - L1MD1 LINE L1 -1239 4907 4244 3 1360 385 271 78 90 chr1 101711180 101711346 -95484086 - RSINE1 SINE B4 0 165 2 3 1360 289 256 101 9 chr1 101711487 101711615 -95483817 - L1MD1 LINE L1 -2172 3974 3834 3 21 8472 157 3 23 chr1 101711765 101712738 -95482694 - L1VL4 LINE L1 -1105 2510 1566 3 1361 246 32 0 0 chr1 101712738 101712769 -95482663 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1361 8472 196 19 33 chr1 101712769 101714114 -95481318 - L1VL4 LINE L1 -2050 1565 55 3 1361 755 265 54 27 chr1 101714115 101714336 -95481096 - Lx8 LINE L1 -136 7337 7111 3 1361 40647 14 1 6 chr1 101714526 101720884 -95474548 - L1Md_A LINE L1 -1 6581 259 3 1361 1559 229 114 19 chr1 101721107 101721467 -95473965 - ORR1A4 LTR MaLR 0 394 1 3 1361 3013 88 2 0 chr1 101722353 101722751 -95472681 + L1_Mus1 LINE L1 6169 6567 0 3 1361 209 57 0 28 chr1 101722784 101722820 -95472612 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1361 243 103 0 0 chr1 101722926 101722965 -95472467 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1361 21 0 0 0 chr1 101724011 101724032 -95471400 + AT_rich Low_complexity Low_complexity 1 21 0 3 1361 2052 166 48 16 chr1 101724487 101724861 -95470571 - L1VL4 LINE L1 -5685 617 232 3 1361 1312 241 66 3 chr1 101724856 101725143 -95470289 - L1VL4 LINE L1 -5997 305 1 3 1361 242 330 16 75 chr1 101725651 101725838 -95469594 + CT-rich Low_complexity Low_complexity 5 180 0 3 1361 344 127 18 35 chr1 101726936 101726993 -95468439 + HAL1-3A_ME LINE L1 1975 2030 -828 4 1361 245 219 0 52 chr1 101726993 101727070 -95468362 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 4 1361 378 173 0 0 chr1 101727723 101727798 -95467634 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1361 714 302 0 12 chr1 101728551 101728715 -95466717 - B4 SINE B4 -75 217 56 4 1361 4218 99 2 11 chr1 101728731 101729352 -95466080 - L1Md_F2 LINE L1 -2 6580 5966 4 1361 2289 39 3 7 chr1 101729352 101729637 -95465795 + L1Md_F2 LINE L1 5651 5934 -632 4 1361 450 0 0 0 chr1 101730096 101730146 -95465286 + (ATG)n Simple_repeat Simple_repeat 2 51 0 4 1361 391 340 13 25 chr1 101730178 101730335 -95465097 - RSINE1 SINE B4 -10 155 1 4 1361 233 340 180 0 chr1 101730452 101730602 -95464830 + MER45C DNA Tip100 1 177 -776 4 1361 774 169 0 0 chr1 101730735 101730877 -95464555 + (TA)n Simple_repeat Simple_repeat 2 143 0 4 1361 306 0 0 0 chr1 101730877 101730911 -95464521 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1361 12654 58 2 2 chr1 101730970 101733326 -95462106 - L1Md_F2 LINE L1 -3 6579 4224 4 1361 1358 85 5 0 chr1 101733321 101733509 -95461923 + L1Md_F2 LINE L1 4043 4231 -1652 4 1361 33 66 0 0 chr1 101733871 101733932 -95461500 + AT_rich Low_complexity Low_complexity 1 61 0 4 1361 382 352 12 59 chr1 101733933 101734102 -95461330 - RSINE1 SINE B4 0 165 5 4 1361 402 57 0 0 chr1 101734825 101734878 -95460554 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1361 542 358 40 28 chr1 101734881 101735131 -95460301 - B4 SINE B4 -25 267 15 4 1361 278 222 11 0 chr1 101736279 101736369 -95459063 + (TATG)n Simple_repeat Simple_repeat 4 94 0 4 1361 313 355 161 25 chr1 101737133 101737295 -95458137 - B4 SINE B4 -108 184 1 4 1361 245 322 0 11 chr1 101737599 101737687 -95457745 + A-rich Low_complexity Low_complexity 5 91 0 4 1361 674 279 278 3 chr1 101737713 101738026 -95457406 - Lx8 LINE L1 -224 7249 6851 4 1361 235 248 68 68 chr1 101739783 101739900 -95455532 + PB1D10 SINE Alu 1 117 0 4 1361 314 184 0 13 chr1 101739910 101739987 -95455445 + GA-rich Low_complexity Low_complexity 2 77 0 4 1361 373 344 129 30 chr1 101740429 101740630 -95454802 + B4 SINE B4 72 292 0 4 1361 847 282 15 72 chr1 101740696 101740960 -95454472 + ORR1E LTR MaLR 106 354 -5 4 1361 1820 232 11 0 chr1 101741048 101741410 -95454022 + ORR1D1 LTR MaLR 3 368 -6 4 1361 450 0 0 0 chr1 101741497 101741547 -95453885 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1361 201 246 0 0 chr1 101742782 101742843 -95452589 + A-rich Low_complexity Low_complexity 1 61 0 4 1361 303 122 0 0 chr1 101744541 101744590 -95450842 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1361 356 371 0 19 chr1 101745672 101745779 -95449653 + B4A SINE B4 3 107 -185 4 1361 383 386 0 25 chr1 101746184 101746341 -95449091 - B4 SINE B4 -8 284 132 4 1361 4413 126 35 11 chr1 101746343 101747056 -95448376 + Lx3_Mus LINE L1 6272 7001 -8 4 1361 23 0 0 0 chr1 101747056 101747079 -95448353 + AT_rich Low_complexity Low_complexity 1 23 0 4 1361 524 352 15 69 chr1 101747280 101747575 -95447857 + B4 SINE B4 4 292 0 4 1361 338 127 0 14 chr1 101747582 101747654 -95447778 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1361 346 388 0 50 chr1 101748199 101748359 -95447073 - RSINE1 SINE B4 0 165 14 4 1361 270 95 0 0 chr1 101748469 101748511 -95446921 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1361 182 128 26 0 chr1 101748950 101748989 -95446443 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1361 239 108 123 0 chr1 101749029 101749094 -95446338 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 4 1361 369 0 0 0 chr1 101749796 101749837 -95445595 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1361 14194 173 19 21 chr1 101750214 101751055 -95444377 + Lx LINE L1 3028 3848 -2035 4 1361 207 0 0 0 chr1 101751055 101751078 -95444354 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1361 14194 173 19 21 chr1 101751078 101752747 -95442685 + Lx LINE L1 3849 5541 -342 4 1361 4091 37 8 0 chr1 101752747 101753238 -95442194 + L1Md_F3 LINE L1 6076 6570 -14 4 1361 14194 136 36 9 chr1 101753238 101754317 -95441115 + Lx LINE L1 5542 6643 -11 4 1361 348 365 20 20 chr1 101754317 101754468 -95440964 - ID_B1 SINE B4 -63 161 11 4 1361 444 111 0 0 chr1 101754974 101755046 -95440386 + (TATG)n Simple_repeat Simple_repeat 2 73 0 4 1361 238 280 0 0 chr1 101755589 101755639 -95439793 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1361 642 26 0 0 chr1 101755645 101755721 -95439711 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1361 438 165 0 0 chr1 101756489 101756568 -95438864 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1361 251 275 0 0 chr1 101758599 101758679 -95436753 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1361 245 268 4 70 chr1 101759376 101759466 -95435966 + MIR SINE MIR 90 184 -84 4 1361 367 351 117 56 chr1 101759469 101759703 -95435729 + B4 SINE B4 11 245 -47 4 1361 336 48 0 0 chr1 101759703 101759745 -95435687 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1361 367 351 117 56 chr1 101759745 101759776 -95435656 + B4 SINE B4 246 292 0 4 1361 384 353 102 62 chr1 101760229 101760506 -95434926 - B4A SINE B4 -1 291 6 4 1361 597 370 118 0 chr1 101761678 101761916 -95433516 - B4A SINE B4 -26 266 1 4 1361 381 357 45 10 chr1 101762159 101762357 -95433075 - MER58A DNA MER1_type -19 205 1 4 1361 233 365 0 0 chr1 101762605 101762679 -95432753 - B4A SINE B4 -1 291 218 4 1361 432 0 0 0 chr1 101763591 101763639 -95431793 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1361 239 73 49 0 chr1 101764117 101764158 -95431274 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 4 1361 348 127 0 0 chr1 101764166 101764221 -95431211 + (GGA)n Simple_repeat Simple_repeat 3 57 0 4 1361 939 316 80 3 chr1 101764551 101764903 -95430529 + MTE2b LTR MaLR 1 379 0 4 1361 485 308 18 25 chr1 101765474 101765637 -95429795 - RSINE1 SINE B4 -1 164 3 4 1361 600 359 37 4 chr1 101766577 101766848 -95428584 - B4A SINE B4 -12 280 1 4 1361 695 296 54 20 chr1 101767633 101767836 -95427596 + B3 SINE B2 6 215 -1 4 1361 331 366 99 6 chr1 101769167 101769329 -95426103 + B4A SINE B4 3 179 -113 4 1361 266 123 0 30 chr1 101769377 101769444 -95425988 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 4 1361 24 0 0 0 chr1 101769714 101769738 -95425694 + AT_rich Low_complexity Low_complexity 1 24 0 4 1361 1200 101 0 0 chr1 101770292 101770470 -95424962 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1361 194 128 0 41 chr1 101770484 101770533 -95424899 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 4 1361 369 0 0 0 chr1 101770666 101770707 -95424725 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1361 866 287 32 0 chr1 101770741 101770988 -95424444 - MTEa LTR MaLR 0 379 125 4 1361 276 154 0 0 chr1 101772192 101772244 -95423188 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1361 647 339 88 36 chr1 101772295 101772546 -95422886 - B4 SINE B4 -8 284 21 4 1361 5246 82 36 1 chr1 101772674 101773398 -95422034 - L1_Mus2 LINE L1 -2 6564 5816 4 1361 418 288 152 63 chr1 101774506 101774743 -95420689 + RMER15 LTR ERVL 275 532 -43 4 1361 1124 288 92 27 chr1 101774957 101775351 -95420081 + MTD LTR MaLR 1 393 -7 4 1361 22 35 0 0 chr1 101775942 101775971 -95419461 + AT_rich Low_complexity Low_complexity 1 29 0 4 1361 696 271 112 54 chr1 101778506 101778802 -95416630 + MTE2a LTR MaLR 61 373 -6 4 1361 321 320 6 17 chr1 101779410 101779585 -95415847 + (TA)n Simple_repeat Simple_repeat 1 173 0 4 1361 335 259 18 18 chr1 101779411 101779521 -95415911 + (TATATG)n Simple_repeat Simple_repeat 5 114 0 4 1361 331 286 0 0 chr1 101779690 101779767 -95415665 + PB1 SINE Alu 46 122 -5 4 1361 25 31 0 0 chr1 101779787 101779819 -95415613 + AT_rich Low_complexity Low_complexity 1 32 0 4 1361 2087 231 72 46 chr1 101780201 101780794 -95414638 - RLTR31_Mm LTR ERVK 0 561 90 4 1361 315 0 0 0 chr1 101780794 101780829 -95414603 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1361 2087 199 77 31 chr1 101780829 101780922 -95414510 - RLTR31_Mm LTR ERVK -465 96 2 4 1361 432 305 82 82 chr1 101781114 101781357 -95414075 - B4A SINE B4 -45 247 5 4 1361 217 196 0 38 chr1 101781437 101781490 -95413942 + CT-rich Low_complexity Low_complexity 5 55 0 4 1361 7687 43 6 2 chr1 101781744 101783177 -95412255 - L1Md_F3 LINE L1 0 6584 5146 4 1361 4048 72 2 27 chr1 101783378 101783933 -95411499 - L1_Mus2 LINE L1 -1 6565 6025 4 1361 226 205 0 0 chr1 101784094 101784133 -95411299 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1361 491 296 97 24 chr1 101784257 101784499 -95410933 + B4A SINE B4 8 274 -18 4 1361 192 40 0 0 chr1 101784870 101784895 -95410537 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 4 1361 890 172 38 6 chr1 101784906 101785064 -95410368 - B2_Mm2 SINE B2 -25 170 8 4 1361 387 353 40 7 chr1 101785618 101785769 -95409663 + B4 SINE B4 78 233 -59 4 1361 260 276 34 118 chr1 101785783 101785902 -95409530 + RSINE1 SINE B4 47 155 -10 4 1361 300 102 0 0 chr1 101785933 101785982 -95409450 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1361 324 155 0 0 chr1 101785992 101786063 -95409369 + GA-rich Low_complexity Low_complexity 2 72 0 4 1361 339 25 0 0 chr1 101787044 101787084 -95408348 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1361 571 359 9 22 chr1 101787138 101787363 -95408069 - B4 SINE B4 -69 223 2 4 1361 660 303 154 35 chr1 101787809 101787940 -95407492 + Lx8 LINE L1 6921 7052 -421 4 1361 306 0 0 0 chr1 101787940 101787974 -95407458 + (ACATG)n Simple_repeat Simple_repeat 4 37 0 4 1361 660 303 154 35 chr1 101787974 101788334 -95407098 + Lx8 LINE L1 7053 7470 -3 4 1361 2570 72 9 6 chr1 101788488 101788836 -95406596 - L1Md_F2 LINE L1 0 6582 6234 4 1361 952 92 35 0 chr1 101788991 101789133 -95406299 + B1_Mus1 SINE Alu 2 148 0 4 1361 199 54 26 26 chr1 101789133 101789171 -95406261 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1361 284 48 24 0 chr1 101789769 101789811 -95405621 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1361 471 293 13 102 chr1 101790424 101790573 -95404859 + B3A SINE B2 8 155 -43 5 1361 537 30 0 0 chr1 101790573 101790640 -95404792 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1361 268 292 12 104 chr1 101790640 101790656 -95404776 + B2_Mm1t SINE B2 143 158 -35 5 1361 1303 303 53 13 chr1 101790668 101791023 -95404409 - Lx6 LINE L1 -26 7434 7065 5 1361 3001 56 2 15 chr1 101791023 101791423 -95404009 - L1Md_F3 LINE L1 0 6584 6190 5 1361 1303 267 231 27 chr1 101791423 101791885 -95403547 - Lx6 LINE L1 -396 7064 6508 5 1361 236 342 80 33 chr1 101792225 101792376 -95403056 - MER5A DNA MER1_type -22 167 10 5 1361 897 349 18 18 chr1 101792676 101792959 -95402473 - B4 SINE B4 -6 286 4 5 1361 1715 232 50 5 chr1 101794608 101795011 -95400421 + MTC LTR MaLR 1 421 0 5 1361 594 113 0 0 chr1 101795375 101795472 -95399960 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 5 1361 21 57 0 0 chr1 101796318 101796353 -95399079 + AT_rich Low_complexity Low_complexity 1 35 0 5 1361 6327 57 1 24 chr1 101796595 101797422 -95398010 - L1Md_F2 LINE L1 -12 6570 5763 5 1361 560 346 13 7 chr1 101797952 101798106 -95397326 - RSINE1 SINE B4 -2 163 9 5 1361 303 187 117 26 chr1 101798113 101798190 -95397242 - B4 SINE B4 -207 85 2 5 1361 1191 55 0 0 chr1 101799138 101799283 -95396149 + B1_Mm SINE Alu 3 147 0 5 1361 324 64 0 0 chr1 101799283 101799330 -95396102 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1361 875 312 164 3 chr1 101799749 101800061 -95395371 - MTEb LTR MaLR -13 366 5 5 1361 189 329 114 65 chr1 101800392 101800733 -95394699 + L2 LINE L2 2396 2753 -666 5 1361 1322 264 41 0 chr1 101801037 101801401 -95394031 - MTEa LTR MaLR 0 379 1 5 1361 1033 289 38 11 chr1 101801782 101802149 -95393283 + MTEa LTR MaLR 3 379 0 5 1361 561 30 0 0 chr1 101802336 101802403 -95393029 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1361 377 257 147 13 chr1 101802404 101802554 -95392878 - MER2 DNA MER2_type -104 241 72 5 1361 431 90 13 0 chr1 101802569 101802647 -95392785 - L1Md_F2 LINE L1 -2 6580 6502 5 1361 511 343 17 57 chr1 101803127 101803427 -95392005 - B4 SINE B4 -4 288 1 5 1361 414 0 0 0 chr1 101803561 101803607 -95391825 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1361 333 0 0 0 chr1 101803607 101803643 -95391789 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1361 985 270 142 20 chr1 101804341 101804692 -95390740 - MTD LTR MaLR -14 405 12 5 1361 393 292 31 0 chr1 101805072 101805168 -95390264 + RSINE1 SINE B4 31 129 -36 5 1361 1071 213 14 23 chr1 101805624 101806094 -95389338 - RLTR12B LTR ERVK -12 516 18 5 1361 568 311 128 12 chr1 101806304 101806561 -95388871 - RMER15 LTR ERVL -46 529 243 5 1361 297 0 0 0 chr1 101807322 101807355 -95388077 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 5 1361 214 325 65 0 chr1 101807541 101807618 -95387814 + MIRb SINE MIR 84 165 -103 5 1361 404 259 0 11 chr1 101808212 101808302 -95387130 + B4A SINE B4 182 270 -22 5 1361 381 43 0 0 chr1 101808309 101808356 -95387076 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1361 586 47 23 0 chr1 101808370 101808456 -95386976 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 1361 354 374 40 20 chr1 101808718 101808917 -95386515 + B4A SINE B4 1 203 -89 5 1361 279 0 0 0 chr1 101809038 101809069 -95386363 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1361 531 350 77 22 chr1 101810132 101810404 -95385028 + B4A SINE B4 1 287 -5 5 1361 5762 140 14 40 chr1 101810500 101812301 -95383131 + L1VL4 LINE L1 356 2089 -1825 5 1361 632 282 106 53 chr1 101812611 101812914 -95382518 + Lx6 LINE L1 7116 7434 -26 5 1361 1034 79 50 0 chr1 101812929 101813068 -95382364 + B1_Mus2 SINE Alu 2 147 0 5 1361 481 145 96 0 chr1 101815681 101815764 -95379668 + 4.5SRNA scRNA scRNA 1 91 -3 5 1361 1058 96 7 0 chr1 101815764 101815910 -95379522 + B1_Mus1 SINE Alu 2 148 0 5 1361 329 317 16 62 chr1 101815922 101816050 -95379382 + B4A SINE B4 82 203 -89 5 1361 20246 62 5 2 chr1 101817487 101821004 -95374428 - L1Md_F3 LINE L1 0 6584 3057 5 1361 768 130 0 63 chr1 101821075 101821195 -95374237 + polypurine Low_complexity Low_complexity 4 113 0 5 1361 1279 61 0 22 chr1 101821195 101821379 -95374053 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1361 768 130 0 63 chr1 101821379 101821447 -95373985 + polypurine Low_complexity Low_complexity 114 180 0 5 1361 921 58 0 0 chr1 101821447 101821567 -95373865 + (GGGAA)n Simple_repeat Simple_repeat 2 121 0 5 1361 1010 136 11 0 chr1 101821568 101821745 -95373687 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1361 21 0 0 0 chr1 101821905 101821926 -95373506 + AT_rich Low_complexity Low_complexity 1 21 0 5 1361 6522 94 25 7 chr1 101821936 101823479 -95371953 - L1_Mus1 LINE L1 0 6567 4987 5 1361 9423 59 9 1 chr1 101823475 101825472 -95369960 - L1Md_F3 LINE L1 0 6584 4568 5 1361 1003 257 87 38 chr1 101825542 101825707 -95369725 + ORR1D2 LTR MaLR 1 170 -200 5 1361 588 81 0 0 chr1 101825707 101825794 -95369638 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1361 1003 257 87 38 chr1 101825794 101825972 -95369460 + ORR1D2 LTR MaLR 171 360 -10 5 1361 240 35 0 0 chr1 101826356 101826385 -95369047 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1361 297 0 0 0 chr1 101826385 101826417 -95369015 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1361 1615 205 18 13 chr1 101826999 101827652 -95367780 - ORR1B2 LTR MaLR 0 394 9 5 1361 459 63 0 0 chr1 101828013 101828076 -95367356 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1361 276 30 0 0 chr1 101828156 101828189 -95367243 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1361 541 319 54 25 chr1 101828719 101829073 -95366359 + Lx8 LINE L1 7110 7473 0 5 1361 256 98 0 24 chr1 101830816 101830858 -95364574 - ORR1E LTR MaLR 0 379 339 5 1361 425 333 137 0 chr1 101830865 101831033 -95364399 - ORR1E LTR MaLR -165 194 4 5 1361 648 262 85 0 chr1 101831427 101831591 -95363841 + B3A SINE B2 3 180 -18 5 1361 306 292 106 106 chr1 101831868 101832075 -95363357 - MT2A LTR ERVL 0 533 327 5 1361 307 356 22 22 chr1 101832070 101832205 -95363227 - MT2A LTR ERVL -166 367 233 5 1361 540 291 40 52 chr1 101832236 101832410 -95363022 - MT2A LTR ERVL -300 233 62 5 1361 359 320 39 0 chr1 101832328 101832431 -95363001 - MTE2b LTR MaLR -233 146 40 5 1361 333 0 0 0 chr1 101832433 101832470 -95362962 + (TAG)n Simple_repeat Simple_repeat 2 38 0 5 1361 2648 154 22 19 chr1 101832478 101832942 -95362490 - Lx3B LINE L1 -7 6966 6502 5 1361 239 50 50 0 chr1 101833105 101833145 -95362287 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1361 432 0 0 0 chr1 101833306 101833354 -95362078 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1361 182 270 130 33 chr1 101834423 101834515 -95360917 + L2b LINE L2 3226 3326 -49 5 1361 402 100 0 0 chr1 101834826 101834886 -95360546 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1361 696 310 48 32 chr1 101834944 101835194 -95360238 - B4 SINE B4 -8 284 31 5 1361 192 97 0 0 chr1 101835281 101835312 -95360120 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1361 741 23 0 0 chr1 101835313 101835400 -95360032 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1361 344 251 49 20 chr1 101836174 101836287 -95359145 - MLT1A1 LTR MaLR -13 395 256 5 1361 374 311 167 32 chr1 101837785 101838031 -95357401 - B4 SINE B4 -12 280 2 5 1361 21 36 0 0 chr1 101838074 101838102 -95357330 + AT_rich Low_complexity Low_complexity 1 28 0 5 1361 43 92 0 0 chr1 101838154 101838274 -95357158 + AT_rich Low_complexity Low_complexity 1 120 0 5 1361 531 312 80 22 chr1 101838530 101838756 -95356676 + B4A SINE B4 3 241 -51 5 1361 518 331 91 127 chr1 101838775 101839193 -95356239 - MTC LTR MaLR -14 407 5 5 1361 234 128 0 0 chr1 101839249 101839288 -95356144 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1361 400 264 49 8 chr1 101839706 101839828 -95355604 + MER2 DNA MER2_type 65 191 -154 5 1361 259 362 83 29 chr1 101840038 101840243 -95355189 - MIRb SINE MIR -44 224 5 5 1361 520 336 52 77 chr1 101841279 101841527 -95353905 + B4A SINE B4 3 244 -48 5 1361 402 305 91 45 chr1 101841510 101841709 -95353723 + B3 SINE B2 6 213 -3 5 1361 2140 172 86 57 chr1 101841730 101842242 -95353190 - RLTR11A2 LTR ERVK 0 527 1 5 1361 985 142 0 0 chr1 101842428 101842576 -95352856 + B1_Mus1 SINE Alu 1 148 0 5 1362 517 280 118 17 chr1 101843499 101843677 -95351755 - ID_B1 SINE B4 -28 196 1 5 1362 4904 152 12 66 chr1 101843911 101844694 -95350738 + L1VL2 LINE L1 403 1188 -5446 5 1362 1169 62 7 0 chr1 101844694 101844840 -95350592 + B1_Mus2 SINE Alu 1 147 0 5 1362 15188 180 11 56 chr1 101844840 101846508 -95348924 + L1VL2 LINE L1 1189 2798 -3085 5 1362 240 35 0 0 chr1 101846508 101846537 -95348895 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1362 15188 184 11 54 chr1 101846537 101848675 -95346757 + L1VL2 LINE L1 2799 4777 -1106 5 1362 34 24 0 0 chr1 101848766 101848807 -95346625 + AT_rich Low_complexity Low_complexity 1 41 0 5 1362 1000 353 96 13 chr1 101848822 101849346 -95346086 - MLT2B3 LTR ERVL -21 696 119 5 1362 1192 83 11 26 chr1 101849443 101850086 -95345346 + (GAAA)n Simple_repeat Simple_repeat 1 632 0 5 1362 1104 53 79 0 chr1 101850384 101850536 -95344896 + L1Md_F2 LINE L1 6417 6580 -2 5 1362 25 31 0 0 chr1 101851342 101851374 -95344058 + AT_rich Low_complexity Low_complexity 1 32 0 5 1362 219 127 14 40 chr1 101852109 101852183 -95343249 + T-rich Low_complexity Low_complexity 2 73 0 5 1362 1173 82 0 0 chr1 101852200 101852347 -95343085 - B1_Mm SINE Alu 0 147 1 5 1362 383 162 35 14 chr1 101852539 101852683 -95342749 + (CA)n Simple_repeat Simple_repeat 2 148 0 5 1362 394 343 43 19 chr1 101852918 101853129 -95342303 + ID_B1 SINE B4 2 217 -7 5 1362 486 0 0 0 chr1 101853989 101854043 -95341389 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1362 250 333 0 31 chr1 101854066 101854162 -95341270 + CT-rich Low_complexity Low_complexity 4 96 0 6 1362 433 320 0 0 chr1 101854163 101854266 -95341166 - PB1D7 SINE Alu -3 117 15 6 1362 952 293 14 72 chr1 101854694 101854782 -95340650 + B4 SINE B4 8 88 -204 6 1362 1673 26 0 0 chr1 101854782 101854972 -95340460 + B2_Mm1t SINE B2 2 191 -2 6 1362 952 293 14 72 chr1 101854972 101855162 -95340270 + B4 SINE B4 89 270 -22 6 1362 324 0 0 0 chr1 101855208 101855244 -95340188 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1362 435 38 0 0 chr1 101856764 101856817 -95338615 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1362 270 0 0 0 chr1 101856853 101856883 -95338549 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 6 1362 433 316 3 18 chr1 101856892 101857027 -95338405 - B3A SINE B2 -40 176 42 6 1362 189 107 0 0 chr1 101857495 101857523 -95337909 + (CTA)n Simple_repeat Simple_repeat 2 29 0 6 1362 201 222 0 22 chr1 101857524 101857542 -95337890 + (TAA)n Simple_repeat Simple_repeat 3 20 0 6 1362 318 50 0 0 chr1 101857542 101857582 -95337850 + (TTA)n Simple_repeat Simple_repeat 1 40 0 6 1362 201 222 0 22 chr1 101857582 101857609 -95337823 + (TAA)n Simple_repeat Simple_repeat 3 29 0 6 1362 530 314 55 86 chr1 101857610 101857830 -95337602 - B4 SINE B4 -77 215 3 6 1362 255 347 20 10 chr1 101858085 101858184 -95337248 + B4A SINE B4 5 104 -188 6 1362 2070 211 46 7 chr1 101858168 101858626 -95336806 + RLTR11A LTR ERVK 53 528 0 6 1362 828 279 98 16 chr1 101858720 101859078 -95336354 - MTD LTR MaLR 0 421 20 6 1362 266 303 22 11 chr1 101859092 101859182 -95336250 + B4A SINE B4 196 286 -6 6 1362 189 74 0 0 chr1 101859251 101859278 -95336154 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1362 529 331 6 13 chr1 101859822 101859978 -95335454 + RSINE1 SINE B4 11 165 0 6 1362 757 319 34 0 chr1 101860395 101860602 -95334830 + ID_B1 SINE B4 11 224 0 6 1362 517 364 0 0 chr1 101860772 101860912 -95334520 + RSINE1 SINE B4 12 151 -14 6 1362 189 107 0 0 chr1 101860943 101860971 -95334461 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1362 369 250 48 0 chr1 101860971 101861055 -95334377 - RLTR20B3 LTR ERVK -487 90 3 6 1362 280 340 58 19 chr1 101861546 101861702 -95333730 - RSINE1 SINE B4 0 165 4 6 1362 344 72 0 18 chr1 101862214 101862271 -95333161 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1362 779 51 0 0 chr1 101863146 101863244 -95332188 - L1_Mus1 LINE L1 -127 6440 6343 6 1362 1332 287 27 19 chr1 101864285 101864661 -95330771 - MTE2a LTR MaLR 0 379 1 6 1362 2866 167 10 19 chr1 101864851 101865363 -95330069 - RMER13B LTR ERVK -305 603 97 6 1362 2571 137 128 29 chr1 101865668 101866151 -95329281 - RLTR1D LTR ERV1 -16 589 59 6 1362 223 204 0 36 chr1 101866444 101866500 -95328932 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1362 214 250 21 0 chr1 101866691 101866739 -95328693 - B4A SINE B4 -234 58 10 6 1362 451 353 21 11 chr1 101866932 101867118 -95328314 - MER5A DNA MER1_type -1 188 1 6 1362 301 277 150 63 chr1 101868114 101868241 -95327191 + B3 SINE B2 6 143 -73 6 1362 804 39 0 0 chr1 101868252 101868356 -95327076 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 1362 320 318 92 15 chr1 101869025 101869220 -95326212 + B4 SINE B4 83 292 0 6 1362 306 0 0 0 chr1 101870030 101870064 -95325368 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1362 363 345 0 0 chr1 101870152 101870239 -95325193 - ORR1E LTR MaLR -272 87 1 6 1362 703 168 12 144 chr1 101870242 101870409 -95325023 + B2_Mm2 SINE B2 2 146 -49 6 1362 678 336 117 23 chr1 101870610 101870866 -95324566 - B4 SINE B4 0 292 13 6 1362 483 167 156 0 chr1 101871102 101871192 -95324240 + RLTR23 LTR ERV1 2 105 -325 6 1362 475 219 41 20 chr1 101871253 101871351 -95324081 + RLTR23 LTR ERV1 117 216 -214 6 1362 34 0 0 0 chr1 101871484 101871518 -95323914 + AT_rich Low_complexity Low_complexity 1 34 0 6 1362 376 360 78 0 chr1 101871518 101871671 -95323761 - ID_B1 SINE B4 -21 203 39 6 1362 1383 179 68 178 chr1 101871839 101872322 -95323110 + RLTR23 LTR ERV1 1 430 0 6 1362 2021 39 0 4 chr1 101872512 101872769 -95322663 + L1Md_F2 LINE L1 5331 5586 -297 6 1362 8049 48 2 1 chr1 101872770 101873762 -95321670 + L1Md_F2 LINE L1 5588 6580 -2 6 1362 328 269 57 9 chr1 101874166 101874271 -95321161 + RMER10B LTR ERVL 289 398 0 6 1362 686 12 0 0 chr1 101874377 101874457 -95320975 - MTA_Mm LTR MaLR -316 80 1 6 1362 7915 87 5 4 chr1 101874457 101875554 -95319878 - MTA_Mm-int LTR MaLR 0 1098 1 6 1362 3182 66 2 0 chr1 101875554 101875949 -95319483 - MTA_Mm LTR MaLR 0 396 1 6 1362 421 333 46 30 chr1 101876148 101876325 -95319107 + B4 SINE B4 35 206 -86 6 1362 2987 78 0 0 chr1 101876325 101876711 -95318721 + L1_Mus1 LINE L1 6182 6567 0 6 1362 421 327 48 24 chr1 101876711 101876724 -95318708 + B4 SINE B4 207 223 -69 6 1362 228 86 0 0 chr1 101876946 101876981 -95318451 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1362 250 274 38 76 chr1 101876994 101877073 -95318359 + B4 SINE B4 201 276 -16 6 1362 536 285 35 35 chr1 101879653 101879795 -95315637 - MT2A LTR ERVL -73 460 319 6 1362 279 0 0 0 chr1 101879825 101879856 -95315576 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1362 1521 37 21 0 chr1 101879979 101880166 -95315266 - B2_Mm2 SINE B2 0 195 5 6 1362 402 21 0 0 chr1 101880623 101880670 -95314762 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1362 573 358 57 35 chr1 101880791 101881162 -95314270 - MT2A LTR ERVL 0 533 155 6 1362 349 314 86 0 chr1 101881173 101881278 -95314154 - MTEa LTR MaLR -244 135 22 6 1362 265 297 190 21 chr1 101882300 101882537 -95312895 + B4A SINE B4 4 280 -12 6 1362 392 0 21 0 chr1 101882549 101882597 -95312835 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1362 555 337 57 18 chr1 101882684 101883019 -95312413 - Lx8 LINE L1 -123 7350 7003 6 1362 354 45 0 0 chr1 101883088 101883132 -95312300 + (TTA)n Simple_repeat Simple_repeat 3 46 0 6 1362 342 330 0 0 chr1 101883256 101883365 -95312067 + (TG)n Simple_repeat Simple_repeat 1 109 0 6 1362 402 312 138 31 chr1 101883368 101883629 -95311803 - B4 SINE B4 -3 289 1 6 1362 1718 168 19 13 chr1 101884085 101884393 -95311039 - ORR1A4 LTR MaLR -19 310 1 6 1362 266 299 0 72 chr1 101884393 101884475 -95310957 + B4A SINE B4 203 278 -14 6 1362 556 59 12 12 chr1 101884483 101884569 -95310863 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1362 327 49 0 0 chr1 101885780 101885821 -95309611 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1362 223 370 14 0 chr1 101885822 101885960 -95309472 + (TATG)n Simple_repeat Simple_repeat 4 143 0 6 1362 189 175 0 0 chr1 101885987 101886027 -95309405 + (CATG)n Simple_repeat Simple_repeat 3 42 0 6 1362 236 40 59 20 chr1 101886028 101886079 -95309353 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1362 563 341 43 32 chr1 101886131 101886410 -95309022 - B4A SINE B4 -6 286 5 6 1362 558 331 34 0 chr1 101886683 101886858 -95308574 - MTEa LTR MaLR 0 379 199 6 1362 411 244 158 8 chr1 101886870 101886990 -95308442 - MTEa LTR MaLR -241 138 1 6 1362 970 291 76 18 chr1 101887852 101888181 -95307251 - MTD LTR MaLR -15 404 57 6 1362 494 300 126 87 chr1 101888369 101888453 -95306979 + B4A SINE B4 1 81 -211 6 1362 261 0 0 0 chr1 101888453 101888482 -95306950 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 6 1362 494 300 126 87 chr1 101888482 101888500 -95306932 + B4A SINE B4 82 93 -199 6 1362 1452 61 0 0 chr1 101888500 101888795 -95306637 + (GAAA)n Simple_repeat Simple_repeat 1 295 0 6 1362 494 300 126 87 chr1 101888795 101888965 -95306467 + B4A SINE B4 94 288 -4 6 1362 349 363 0 6 chr1 101888989 101889169 -95306263 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1362 336 48 0 0 chr1 101890285 101890327 -95305105 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 6 1362 493 255 52 0 chr1 101890327 101890480 -95304952 - Lx5 LINE L1 -14 7036 6876 6 1362 1672 212 5 64 chr1 101890478 101890866 -95304566 + Lx5 LINE L1 6519 6883 -167 6 1362 286 369 78 92 chr1 101890931 101891212 -95304220 - B4 SINE B4 -11 281 5 6 1362 569 40 13 0 chr1 101891280 101891356 -95304076 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 1362 2873 89 5 5 chr1 101891537 101891932 -95303500 + L1_Mus2 LINE L1 6170 6564 -2 6 1362 713 313 99 16 chr1 101892788 101893041 -95302391 + B4 SINE B4 2 275 -17 6 1362 530 131 10 0 chr1 101893059 101893158 -95302274 + (CA)n Simple_repeat Simple_repeat 2 101 0 6 1362 231 214 53 18 chr1 101893776 101893833 -95301599 - B4 SINE B4 -69 223 165 6 1362 560 269 14 3 chr1 101894619 101894764 -95300668 + B3A SINE B2 8 155 -61 6 1362 279 0 0 0 chr1 101894765 101894796 -95300636 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1362 489 286 43 5 chr1 101894839 101895025 -95300407 + Lx6 LINE L1 7110 7302 -158 6 1362 712 292 49 127 chr1 101895037 101895469 -95299963 - RLTR23 LTR ERV1 -25 405 8 6 1362 290 311 0 10 chr1 101895492 101895596 -95299836 + Lx6 LINE L1 7288 7390 -70 6 1362 522 0 0 0 chr1 101895629 101895687 -95299745 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1362 385 300 65 32 chr1 101895692 101895847 -95299585 + B4A SINE B4 113 272 -20 6 1362 23 33 0 0 chr1 101895898 101895928 -95299504 + AT_rich Low_complexity Low_complexity 1 30 0 6 1362 187 337 49 35 chr1 101896033 101896190 -95299242 - MIRc SINE MIR -107 161 2 6 1362 24 67 0 0 chr1 101896958 101897003 -95298429 + AT_rich Low_complexity Low_complexity 1 45 0 6 1362 7279 100 17 2 chr1 101897043 101898051 -95297381 - RLTR13D5 LTR ERVK 0 1023 1 6 1362 902 220 90 21 chr1 101898052 101898340 -95297092 - Lx9 LINE L1 -49 7595 7288 6 1362 1100 138 72 0 chr1 101898376 101898557 -95296875 + B2_Mm2 SINE B2 2 195 0 6 1362 413 271 78 9 chr1 101898581 101898719 -95296713 + ID_B1 SINE B4 2 154 -138 6 1362 439 235 59 25 chr1 101898805 101898923 -95296509 + B4A SINE B4 108 229 -63 6 1362 8074 104 33 11 chr1 101898953 101900028 -95295404 - Lx3_Mus LINE L1 0 7009 5920 6 1362 255 31 0 0 chr1 101900028 101900060 -95295372 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1362 8074 104 33 11 chr1 101900060 101900254 -95295178 - Lx3_Mus LINE L1 -1090 5919 5713 6 1362 1004 225 44 1 chr1 101900254 101900484 -95294948 - ORR1B2 LTR MaLR -14 380 138 6 1362 975 116 0 28 chr1 101900777 101900919 -95294513 - B1_Mus1 SINE Alu -9 139 2 6 1362 414 0 0 0 chr1 101901124 101901170 -95294262 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1362 673 348 53 38 chr1 101901180 101901446 -95293986 - B4 SINE B4 -18 274 5 7 1362 447 35 0 0 chr1 101902487 101902544 -95292888 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1362 348 24 0 0 chr1 101903251 101903292 -95292140 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1362 863 295 60 25 chr1 101903321 101903791 -95291641 + BLACKJACK DNA AcHobo 1955 2440 -504 7 1362 22 35 0 0 chr1 101903944 101903973 -95291459 + AT_rich Low_complexity Low_complexity 1 29 0 7 1362 707 338 54 22 chr1 101904158 101904436 -95290996 + B4 SINE B4 2 288 -4 7 1362 241 272 20 80 chr1 101904399 101904499 -95290933 + RMER12 LTR ERVK 738 831 -491 7 1362 1326 266 40 37 chr1 101904854 101905117 -95290315 - MTE2a LTR MaLR 0 379 114 7 1362 1744 193 68 3 chr1 101905117 101905470 -95289962 - ORR1C1 LTR MaLR -2 376 1 7 1362 1326 266 40 37 chr1 101905470 101905584 -95289848 - MTE2a LTR MaLR -266 113 1 7 1362 415 118 13 13 chr1 101906031 101906108 -95289324 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1362 829 191 10 49 chr1 101906353 101906557 -95288875 - L1_Mus4 LINE L1 0 6636 6441 7 1362 5639 99 0 25 chr1 101906539 101906693 -95288739 - L1_Mus4 LINE L1 -665 5971 5827 7 1362 3099 40 11 0 chr1 101906693 101907069 -95288363 - L1Md_F3 LINE L1 -14 6570 6191 7 1362 5639 192 2 195 chr1 101907069 101907572 -95287860 - L1_Mus4 LINE L1 -57 5829 5430 7 1362 553 270 15 75 chr1 101907572 101907772 -95287660 - ORR1D2 LTR MaLR -3 367 180 7 1362 5639 192 2 195 chr1 101907772 101907849 -95287583 - L1_Mus4 LINE L1 -57 5429 5368 7 1362 5890 52 1 0 chr1 101907849 101908576 -95286856 + L1Md_F2 LINE L1 5849 6576 -6 7 1362 5639 192 2 195 chr1 101908576 101908872 -95286560 - L1_Mus4 LINE L1 -519 5367 5079 7 1362 1175 75 0 0 chr1 101908872 101909019 -95286413 + B1_Mm SINE Alu 1 147 0 7 1362 5639 192 2 195 chr1 101909019 101910001 -95285431 - L1_Mus4 LINE L1 -808 5078 4169 7 1362 9964 125 7 4 chr1 101910002 101911770 -95283662 - MusHAL1 LINE L1 -972 2845 1069 7 1362 4256 130 12 73 chr1 101911906 101912703 -95282729 - RMER17A LTR ERVK -2 749 1 7 1362 879 100 0 0 chr1 101913875 101914025 -95281407 + (GA)n Simple_repeat Simple_repeat 1 150 0 7 1362 1161 68 0 20 chr1 101914314 101914465 -95280967 + B1_Mus1 SINE Alu 1 148 0 7 1362 476 348 29 7 chr1 101914491 101914609 -95280823 + RSINE1 SINE B4 12 133 -32 7 1362 252 0 0 0 chr1 101914609 101914637 -95280795 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1362 476 348 29 7 chr1 101914637 101914654 -95280778 + RSINE1 SINE B4 134 150 -15 7 1362 219 36 0 0 chr1 101915201 101915229 -95280203 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1362 617 0 14 0 chr1 101915365 101915438 -95279994 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 1362 777 217 5 16 chr1 101915537 101915729 -95279703 - B2_Mm2 SINE B2 -5 190 1 7 1362 313 332 73 41 chr1 101916302 101916522 -95278910 + RMER15 LTR ERVL 348 574 -1 7 1362 665 342 106 47 chr1 101918178 101918604 -95276828 - RLTR17 LTR ERVK -126 566 116 7 1362 276 244 35 47 chr1 101918640 101918726 -95276706 + MTE2b LTR MaLR 17 101 -278 7 1362 362 267 173 4 chr1 101918913 101919029 -95276403 - Lx9 LINE L1 -1 7643 7519 7 1362 239 95 48 0 chr1 101919029 101919071 -95276361 + (CATA)n Simple_repeat Simple_repeat 1 44 0 7 1362 362 267 173 4 chr1 101919071 101919202 -95276230 - Lx9 LINE L1 -126 7518 7354 7 1362 21 0 0 0 chr1 101919205 101919226 -95276206 + AT_rich Low_complexity Low_complexity 1 21 0 7 1362 24 0 0 0 chr1 101919381 101919405 -95276027 + AT_rich Low_complexity Low_complexity 1 24 0 7 1362 3228 260 45 11 chr1 101919509 101920406 -95275026 - Lx9 LINE L1 -289 7355 6429 7 1362 3346 21 21 0 chr1 101920423 101920810 -95274622 + MTA_Mm LTR MaLR 1 395 -1 7 1362 655 312 0 0 chr1 101920815 101920975 -95274457 - MT2A LTR ERVL -161 372 213 7 1362 43 20 0 0 chr1 101922493 101922543 -95272889 + AT_rich Low_complexity Low_complexity 1 50 0 7 1362 911 346 14 21 chr1 101922550 101922833 -95272599 + B4 SINE B4 8 288 -4 7 1362 236 158 18 0 chr1 101923040 101923097 -95272335 + GA-rich Low_complexity Low_complexity 3 60 0 7 1362 528 150 0 0 chr1 101923848 101923961 -95271471 + GA-rich Low_complexity Low_complexity 2 114 0 7 1362 1133 144 11 0 chr1 101924006 101924193 -95271239 + B2_Mm1t SINE B2 1 189 -4 7 1362 258 333 13 0 chr1 101924214 101924289 -95271143 + B4 SINE B4 9 84 -208 7 1362 407 333 0 52 chr1 101924314 101924507 -95270925 + B3A SINE B2 1 183 -15 7 1362 247 337 24 0 chr1 101924539 101924622 -95270810 + B4 SINE B4 82 166 -126 7 1362 389 336 17 0 chr1 101924923 101925039 -95270393 - B1_Mur1 SINE Alu -31 118 1 7 1362 8511 107 27 3 chr1 101925056 101926612 -95268820 + Lx3_Mus LINE L1 5407 7003 -6 7 1362 382 321 66 115 chr1 101926642 101926825 -95268607 - B3A SINE B2 0 198 25 7 1362 549 0 0 0 chr1 101926941 101927002 -95268430 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1362 387 0 0 0 chr1 101927002 101927044 -95268388 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1362 912 277 66 66 chr1 101927103 101927482 -95267950 - MTEa LTR MaLR 0 379 1 7 1362 625 267 101 131 chr1 101928408 101928774 -95266658 + MTE2a LTR MaLR 7 361 -18 7 1362 837 245 39 25 chr1 101929354 101929611 -95265821 + MTE2a LTR MaLR 161 419 0 7 1362 336 111 0 0 chr1 101929860 101929914 -95265518 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1362 450 0 0 0 chr1 101929923 101929973 -95265459 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1362 216 255 0 0 chr1 101930815 101930862 -95264570 + GA-rich Low_complexity Low_complexity 2 48 0 7 1362 2377 175 91 8 chr1 101931154 101931626 -95263806 - RLTR11A LTR ERVK -2 526 16 7 1362 3172 94 121 2 chr1 101932584 101933065 -95262367 + L1_Mus4 LINE L1 6099 6636 0 7 1362 250 241 0 18 chr1 101933278 101933347 -95262085 - MIR SINE MIR -49 159 92 7 1362 306 204 0 0 chr1 101933376 101933469 -95261963 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 1362 752 214 128 6 chr1 101933816 101933995 -95261437 + MTD LTR MaLR 205 405 -14 7 1362 291 360 139 7 chr1 101934023 101934078 -95261354 + B4 SINE B4 122 189 -103 7 1362 4783 60 19 33 chr1 101934078 101934749 -95260683 + L1_Mus1 LINE L1 5906 6567 0 7 1362 291 360 139 7 chr1 101934749 101934844 -95260588 + B4 SINE B4 190 291 -1 7 1362 183 80 0 0 chr1 101934881 101934906 -95260526 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1362 634 304 19 6 chr1 101935730 101935892 -95259540 - ID_B1 SINE B4 -11 213 50 7 1362 294 333 46 81 chr1 101936076 101936249 -95259183 - MLT1A0 LTR MaLR -37 328 162 7 1362 184 170 38 0 chr1 101936854 101936907 -95258525 + CT-rich Low_complexity Low_complexity 1 55 0 7 1362 254 221 11 0 chr1 101937448 101937543 -95257889 + CT-rich Low_complexity Low_complexity 2 97 0 7 1362 862 195 187 28 chr1 101938392 101938828 -95256604 + RMER17C-int LTR ERVK 1484 1988 -1250 7 1362 808 144 43 6 chr1 101938832 101938993 -95256439 + RMER17C-int LTR ERVK 2170 2336 -902 7 1362 754 134 303 21 chr1 101939030 101939269 -95256163 + RMER17C-int LTR ERVK 2576 2881 -357 7 1362 573 214 32 97 chr1 101942225 101942286 -95253146 - RMER15 LTR ERVL 0 575 515 7 1362 2358 197 42 4 chr1 101942286 101942791 -95252641 - RLTR28 LTR ERVL 0 524 1 7 1362 573 214 32 97 chr1 101942791 101942884 -95252548 - RMER15 LTR ERVL -61 514 431 7 1362 1893 186 58 58 chr1 101943347 101943780 -95251652 - RMER15 LTR ERVL -142 433 1 7 1362 816 138 0 0 chr1 101944374 101944497 -95250935 - B1_Mus1 SINE Alu 0 148 26 7 1362 210 244 0 0 chr1 101944619 101944664 -95250768 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 7 1362 833 147 6 0 chr1 101944669 101944839 -95250593 + CT-rich Low_complexity Low_complexity 2 172 0 7 1362 230 284 0 26 chr1 101945265 101945341 -95250091 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1362 380 368 41 63 chr1 101945343 101945613 -95249819 - B4A SINE B4 0 292 29 7 1362 2643 219 99 37 chr1 101945627 101945785 -95249647 - Lx9 LINE L1 -2 7642 7481 7 1362 489 84 0 0 chr1 101945785 101945856 -95249576 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1362 2643 219 99 37 chr1 101945856 101946455 -95248977 - Lx9 LINE L1 -164 7480 6839 7 1362 192 77 0 0 chr1 101947090 101947116 -95248316 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 7 1362 230 316 0 0 chr1 101947444 101947523 -95247909 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1362 1194 210 9 4 chr1 101947670 101947895 -95247537 - URR1A DNA MER1_type 0 226 1 7 1362 877 279 111 38 chr1 101948089 101948475 -95246957 - MTE2a LTR MaLR -5 414 1 7 1362 360 0 0 0 chr1 101949038 101949078 -95246354 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1362 713 348 20 24 chr1 101949358 101949608 -95245824 - B4 SINE B4 -15 277 29 7 1362 474 75 0 0 chr1 101949688 101949755 -95245677 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1362 255 167 0 0 chr1 101949758 101949824 -95245608 + GA-rich Low_complexity Low_complexity 2 67 0 7 1362 26 30 0 0 chr1 101949936 101949969 -95245463 + AT_rich Low_complexity Low_complexity 1 33 0 7 1362 3859 194 9 45 chr1 101950412 101950457 -95244975 + RMER13B LTR ERVK 1 44 -864 7 1362 3832 55 0 2 chr1 101950457 101950931 -95244501 + L1_Mus1 LINE L1 6093 6565 -2 7 1362 3859 194 9 45 chr1 101950931 101951691 -95243741 + RMER13B LTR ERVK 45 777 -131 7 1362 25 51 0 0 chr1 101952216 101952255 -95243177 + AT_rich Low_complexity Low_complexity 1 39 0 7 1362 292 351 92 7 chr1 101952359 101952511 -95242921 + ID_B1 SINE B4 9 173 -51 7 1362 7168 185 38 22 chr1 101953061 101954464 -95240968 - Lx2B LINE L1 -20 6980 5585 7 1362 6832 192 40 7 chr1 101954459 101954555 -95240877 + L1_Mur2 LINE L1 4085 4189 -1688 7 1362 498 17 0 0 chr1 101954555 101954614 -95240818 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1362 6832 192 40 7 chr1 101954614 101955926 -95239506 + L1_Mur2 LINE L1 4190 5539 -338 7 1362 21 36 0 0 chr1 101955936 101955964 -95239468 + AT_rich Low_complexity Low_complexity 1 28 0 7 1362 545 264 124 36 chr1 101956472 101956665 -95238767 + ID_B1 SINE B4 12 221 -3 7 1362 1776 53 0 9 chr1 101957605 101957835 -95237597 + L1Md_F2 LINE L1 6344 6571 -11 7 1362 656 296 29 57 chr1 101958093 101958373 -95237059 + B4 SINE B4 3 274 -18 7 1362 290 80 20 0 chr1 101958737 101958787 -95236645 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1362 306 322 42 17 chr1 101958813 101958933 -95236499 - B4A SINE B4 -64 228 106 7 1362 209 33 33 0 chr1 101958947 101958977 -95236455 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1362 3389 13 0 10 chr1 101959160 101959556 -95235876 + L1Md_T LINE L1 6191 6582 0 7 1362 426 53 0 0 chr1 101960623 101960680 -95234752 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1362 246 319 42 11 chr1 101960939 101961034 -95234398 + PB1D7 SINE Alu 1 98 -22 7 1362 1299 264 58 48 chr1 101962637 101963172 -95232260 + RMER19C LTR ERVK 138 664 -238 8 1362 610 355 50 21 chr1 101963657 101963939 -95231493 + B4A SINE B4 1 290 -2 8 1362 233 120 40 0 chr1 101964654 101964704 -95230728 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 8 1362 270 318 67 79 chr1 101964704 101964868 -95230564 - RSINE1 SINE B4 -1 164 3 8 1362 5354 272 53 21 chr1 101964913 101966418 -95229014 - Lx6 LINE L1 0 7696 5888 8 1362 349 352 59 77 chr1 101966807 101966976 -95228456 + B4A SINE B4 1 166 -126 8 1362 1326 66 0 0 chr1 101967022 101967233 -95228199 + (GAA)n Simple_repeat Simple_repeat 1 211 0 8 1362 296 324 0 0 chr1 101967249 101967320 -95228112 + RSINE1 SINE B4 82 152 -13 8 1362 378 0 0 0 chr1 101967341 101967383 -95228049 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1362 239 299 0 43 chr1 101968843 101968913 -95226519 - B4A SINE B4 0 292 226 8 1362 395 215 176 9 chr1 101968916 101969024 -95226408 - RMER19B LTR ERVK -469 433 308 8 1362 257 0 30 0 chr1 101969280 101969313 -95226119 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 1362 263 296 136 0 chr1 101969371 101969459 -95225973 + RSINE1 SINE B4 4 103 -62 8 1362 357 327 67 38 chr1 101970487 101970697 -95224735 - B4A SINE B4 -75 217 2 8 1362 354 298 77 46 chr1 101970917 101971047 -95224385 + B4 SINE B4 13 146 -146 8 1362 190 250 31 77 chr1 101971128 101971193 -95224239 - L2c LINE L2 -68 3319 3258 8 1362 361 307 171 0 chr1 101971816 101971956 -95223476 + RSINE1 SINE B4 2 165 0 8 1362 185 211 19 0 chr1 101972214 101972266 -95223166 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1362 419 63 0 16 chr1 101972998 101973062 -95222370 + (TATG)n Simple_repeat Simple_repeat 4 66 0 8 1362 3657 109 3 17 chr1 101973089 101973654 -95221778 + MusHAL1 LINE L1 1716 2277 -435 8 1362 957 137 7 0 chr1 101973654 101973800 -95221632 + B1_Mus1 SINE Alu 2 148 0 8 1362 3657 109 3 17 chr1 101973800 101973828 -95221604 + MusHAL1 LINE L1 2278 2301 -411 8 170 181 215 0 41 chr1 101973869 101974039 -95221393 + A-rich Low_complexity Low_complexity 1 163 0 8 1363 1960 151 6 17 chr1 101974043 101974446 -95220986 + L1_Mur2 LINE L1 3394 3773 -2104 8 1363 347 138 11 0 chr1 101974501 101974588 -95220844 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1363 524 306 70 30 chr1 101974652 101974851 -95220581 + B3A SINE B2 6 212 -4 8 1363 219 273 90 15 chr1 101975050 101975117 -95220315 + MER5A DNA MER1_type 95 166 -23 8 1363 753 174 0 0 chr1 101975155 101975382 -95220050 + CT-rich Low_complexity Low_complexity 1 227 0 8 1363 280 295 22 11 chr1 101975420 101975509 -95219923 + MT2A LTR ERVL 13 102 -431 8 1363 1570 249 29 36 chr1 101975527 101975943 -95219489 - MTD LTR MaLR -6 413 1 8 1363 417 221 51 31 chr1 101975945 101976043 -95219389 + MTE2b LTR MaLR 87 186 -193 8 1363 1529 231 18 57 chr1 101977332 101977657 -95217775 + ORR1D1 LTR MaLR 2 314 -60 8 1363 1637 151 33 16 chr1 101977657 101977961 -95217471 - Lx LINE L1 0 6654 6346 8 1363 1529 231 18 57 chr1 101977961 101978021 -95217411 + ORR1D1 LTR MaLR 315 372 -2 8 1363 354 23 0 0 chr1 101978141 101978184 -95217248 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1363 205 29 59 0 chr1 101978404 101978438 -95216994 + (TA)n Simple_repeat Simple_repeat 1 36 0 8 1363 2128 46 0 0 chr1 101978732 101978995 -95216437 - L1Md_A LINE L1 -1 6581 6319 8 1363 694 331 116 2 chr1 101979317 101979634 -95215798 - Lx8 LINE L1 -999 6645 6332 8 1363 22 56 0 0 chr1 101979756 101979792 -95215640 + AT_rich Low_complexity Low_complexity 1 36 0 8 1363 590 276 8 0 chr1 101980063 101980197 -95215235 + B1_Mur2 SINE Alu 5 139 -10 8 1363 822 319 42 42 chr1 101980751 101981151 -95214281 - RLTR17 LTR ERVK -177 515 116 8 1363 377 129 0 14 chr1 101981492 101981563 -95213869 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 8 1363 366 23 0 0 chr1 101981554 101981597 -95213835 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1363 736 281 129 28 chr1 101981615 101981941 -95213491 - ORR1E LTR MaLR 0 359 1 8 1363 275 231 76 13 chr1 101982310 101982389 -95213043 + B4A SINE B4 141 224 -68 8 1363 225 65 0 0 chr1 101982390 101982421 -95213011 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1363 280 203 17 17 chr1 101982872 101982932 -95212500 - ID4 SINE ID -8 75 16 8 1363 2045 104 19 0 chr1 101983002 101983310 -95212122 - L1_Mus3 LINE L1 -5 6633 6320 8 1363 409 241 36 50 chr1 101983543 101983683 -95211749 - MER115 DNA Tip100 -14 679 542 8 1363 517 346 120 6 chr1 101984479 101984661 -95210771 + B4 SINE B4 10 212 -80 8 1363 413 148 131 12 chr1 101984661 101984772 -95210660 - ORR1D2 LTR MaLR 0 379 252 8 1363 282 209 13 152 chr1 101984922 101984951 -95210481 + B4 SINE B4 7 35 -257 8 1363 1089 89 0 0 chr1 101984951 101985097 -95210335 + B1_Mus1 SINE Alu 2 147 -1 8 1363 311 0 0 25 chr1 101985097 101985137 -95210295 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1363 282 209 13 152 chr1 101985137 101985185 -95210247 + B4 SINE B4 36 73 -219 8 1363 1105 264 127 19 chr1 101985188 101985558 -95209874 - MTD LTR MaLR -7 412 3 8 1363 591 378 51 17 chr1 101986442 101986679 -95208753 + B4A SINE B4 1 245 -47 8 1363 725 279 165 22 chr1 101987074 101987437 -95207995 - RMER5 LTR ERV1 -4 530 116 8 1363 373 322 210 13 chr1 101988262 101988498 -95206934 - MTC LTR MaLR -17 404 121 8 1363 902 284 124 10 chr1 101989092 101989430 -95206002 - MTEb LTR MaLR -4 375 1 8 1363 1129 68 0 20 chr1 101989657 101989806 -95205626 + B1_Mm SINE Alu 2 147 0 8 1363 2087 106 10 0 chr1 101989996 101990308 -95205124 - L1_Mus2 LINE L1 -593 5290 4976 8 1363 7022 97 5 6 chr1 101990309 101991579 -95203853 + L1_Mus2 LINE L1 5296 6563 -3 8 1363 30 59 0 0 chr1 101991790 101991841 -95203591 + AT_rich Low_complexity Low_complexity 1 51 0 8 1363 21 100 0 0 chr1 101992054 101992124 -95203308 + AT_rich Low_complexity Low_complexity 1 70 0 8 1363 22 0 0 0 chr1 101992533 101992555 -95202877 + AT_rich Low_complexity Low_complexity 1 22 0 8 1363 316 170 44 32 chr1 101992750 101992908 -95202524 + GA-rich Low_complexity Low_complexity 5 164 0 8 1363 288 0 0 0 chr1 101992985 101993017 -95202415 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1363 651 60 0 0 chr1 101993236 101993320 -95202112 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 1363 253 278 0 0 chr1 101993326 101993380 -95202052 - RSINE1 SINE B4 -12 153 100 8 1363 185 118 28 42 chr1 101993536 101993607 -95201825 + T-rich Low_complexity Low_complexity 2 71 0 8 1363 394 299 0 0 chr1 101994572 101994659 -95200773 + ID_B1 SINE B4 5 91 -133 8 1363 282 267 117 19 chr1 101994660 101994763 -95200669 - ORR1E LTR MaLR -4 375 263 8 1363 836 322 25 4 chr1 101994826 101995063 -95200369 - ORR1E LTR MaLR -114 245 4 8 1363 547 292 7 0 chr1 101995066 101995203 -95200229 + ID_B1 SINE B4 87 224 0 8 1363 278 353 72 22 chr1 101995617 101995696 -95199736 - Lx9 LINE L1 -60 7413 7331 8 1363 432 82 0 0 chr1 101995696 101995757 -95199675 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1363 471 340 86 8 chr1 101995757 101996025 -95199407 - Lx9 LINE L1 -186 7458 7171 8 1363 423 0 0 0 chr1 101996040 101996087 -95199345 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1363 360 0 0 0 chr1 101996087 101996126 -95199306 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1363 1234 61 6 0 chr1 101996284 101996447 -95198985 + L1Md_T LINE L1 6418 6581 -1 8 1363 23 0 0 0 chr1 101996467 101996490 -95198942 + AT_rich Low_complexity Low_complexity 1 23 0 8 1363 289 300 103 36 chr1 101996508 101996926 -95198506 - L1MDa LINE L1 -4069 2564 2119 8 1363 429 70 0 0 chr1 101996926 101996983 -95198449 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1363 309 51 0 0 chr1 101996983 101997021 -95198411 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1363 423 0 0 0 chr1 101997370 101997417 -95198015 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1363 512 181 11 0 chr1 101997439 101997533 -95197899 + L1_Mur1 LINE L1 4658 4752 -1134 8 1363 7038 116 10 14 chr1 101998148 101999239 -95196193 + L1_Mur1 LINE L1 4749 5835 -51 8 1363 1054 157 21 5 chr1 101999457 101999649 -95195783 + B2_Mm2 SINE B2 1 195 0 8 1363 210 128 0 0 chr1 101999650 101999689 -95195743 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 8 1363 1119 196 83 4 chr1 101999718 101999851 -95195581 - RLTR25B LTR ERVK -265 763 627 8 1363 296 48 24 0 chr1 101999851 101999893 -95195539 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1363 1119 196 83 4 chr1 101999893 102000000 -95195432 - RLTR25B LTR ERVK -402 626 505 8 1363 1551 206 221 36 chr1 102000008 102000426 -95195006 - RLTR25B LTR ERVK -533 495 1 1 1363 231 114 0 0 chr1 102000547 102000582 -95194850 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1363 2192 168 3 8 chr1 102001076 102001449 -95193983 + RLTR25B LTR ERVK 1 371 -657 3 1363 407 269 210 0 chr1 102001531 102001717 -95193715 + L1_Mur3 LINE L1 4681 4905 -975 4 1363 588 250 54 7 chr1 102002136 102002285 -95193147 + ORR1D1 LTR MaLR 5 160 -214 5 1363 375 78 0 0 chr1 102002786 102002837 -95192595 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1363 457 350 11 73 chr1 102003780 102003971 -95191461 + B4 SINE B4 27 205 -87 7 1363 723 59 0 0 chr1 102003972 102004073 -95191359 + (TC)n Simple_repeat Simple_repeat 2 102 0 8 1363 745 228 0 102 chr1 102004101 102004336 -95191096 - RMER10B LTR ERVL 0 398 188 9 1363 799 230 81 12 chr1 102004345 102004591 -95190841 - RMER10B LTR ERVL -135 263 1 1 1363 669 180 0 0 chr1 102005805 102006037 -95189395 + (CA)n Simple_repeat Simple_repeat 1 232 0 1 1363 447 324 54 26 chr1 102006403 102006645 -95188787 - MLT1A0 LTR MaLR 0 365 57 1 1363 1385 76 38 0 chr1 102007102 102007287 -95188145 - B2_Mm2 SINE B2 -2 193 2 1 1363 225 100 48 36 chr1 102007610 102007693 -95187739 + T-rich Low_complexity Low_complexity 2 85 0 1 1363 1123 76 0 0 chr1 102007697 102007842 -95187590 - B1_Mm SINE Alu -1 146 2 1 1363 344 269 39 0 chr1 102008129 102008233 -95187199 + ID_B1 SINE B4 117 224 0 1 1363 214 264 19 0 chr1 102008239 102008292 -95187140 + GA-rich Low_complexity Low_complexity 2 55 0 1 1363 422 268 55 8 chr1 102009093 102009221 -95186211 + RSINE1 SINE B4 3 136 -29 1 1363 479 319 68 77 chr1 102009496 102009717 -95185715 + B4 SINE B4 1 219 -73 1 1363 21 0 0 0 chr1 102009825 102009846 -95185586 + AT_rich Low_complexity Low_complexity 1 21 0 2 1363 585 309 89 6 chr1 102009851 102010030 -95185402 + B4 SINE B4 91 284 -8 2 1363 21 36 0 0 chr1 102010670 102010698 -95184734 + AT_rich Low_complexity Low_complexity 1 28 0 2 1363 27 29 0 0 chr1 102011322 102011356 -95184076 + AT_rich Low_complexity Low_complexity 1 34 0 2 1363 264 217 14 14 chr1 102011669 102011739 -95183693 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1363 392 253 259 0 chr1 102012528 102012694 -95182738 - B3 SINE B2 -4 212 4 2 1363 671 317 77 0 chr1 102012916 102013175 -95182257 - B4A SINE B4 -12 280 2 2 1363 444 283 28 0 chr1 102013437 102013543 -95181889 + B3 SINE B2 60 168 -48 2 1363 324 343 131 0 chr1 102013694 102013793 -95181639 - PB1D7 SINE Alu -8 112 1 2 1363 200 184 20 0 chr1 102013871 102013920 -95181512 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1363 565 282 94 6 chr1 102014007 102014178 -95181254 - B4 SINE B4 -105 187 2 3 1363 3437 247 28 18 chr1 102014316 102015224 -95180208 - Lx4B LINE L1 -286 6772 5926 3 1363 820 304 13 4 chr1 102015480 102015711 -95179721 + B4A SINE B4 2 234 -58 3 1363 240 370 9 57 chr1 102015736 102015837 -95179595 + RSINE1 SINE B4 54 150 -15 3 1363 459 52 0 0 chr1 102015837 102015895 -95179537 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1363 445 310 9 0 chr1 102017078 102017191 -95178241 + B3A SINE B2 2 115 -83 3 1363 22 70 0 0 chr1 102018101 102018144 -95177288 + AT_rich Low_complexity Low_complexity 1 43 0 3 1363 24 53 0 0 chr1 102018557 102018595 -95176837 + AT_rich Low_complexity Low_complexity 1 38 0 3 1363 414 0 0 0 chr1 102018763 102018809 -95176623 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1363 2399 200 124 14 chr1 102018893 102019410 -95176022 - RMER19B LTR ERVK -217 685 112 3 1363 1039 152 60 0 chr1 102019406 102019590 -95175842 + RMER19B LTR ERVK 697 891 -11 4 1363 1120 295 121 32 chr1 102019613 102020075 -95175357 - Lx8 LINE L1 -561 6912 6410 4 1363 2619 93 118 13 chr1 102021299 102021747 -95173685 + Lx3_Mus LINE L1 5923 6417 -592 4 1363 386 85 0 17 chr1 102022483 102022543 -95172889 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1363 432 382 37 16 chr1 102022600 102022789 -95172643 - B4A SINE B4 -73 219 27 4 1363 4041 97 22 3 chr1 102022969 102023558 -95171874 + Lx3_Mus LINE L1 6410 7009 0 4 1363 1200 291 32 12 chr1 102023618 102023960 -95171472 + MTD LTR MaLR 1 322 -97 4 1363 229 118 0 0 chr1 102024046 102024080 -95171352 + Lx3_Mus LINE L1 6744 6777 -232 4 1363 183 204 0 0 chr1 102024179 102024228 -95171204 + (CAT)n Simple_repeat Simple_repeat 1 49 0 4 1363 450 0 0 0 chr1 102024815 102024865 -95170567 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1363 643 256 45 0 chr1 102024979 102025112 -95170320 - B1_Mur4 SINE Alu -8 142 4 5 1363 290 242 0 43 chr1 102025682 102025751 -95169681 + B3A SINE B2 46 111 -87 5 1363 486 33 0 0 chr1 102025799 102025859 -95169573 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1363 330 312 88 51 chr1 102025960 102026305 -95169127 + RLTR17 LTR ERVK 45 433 -259 5 1363 3929 237 57 14 chr1 102026740 102027818 -95167614 - Lx9 LINE L1 -10 7634 6511 5 1363 1137 308 25 78 chr1 102027858 102028253 -95167179 + MTEa LTR MaLR 6 379 0 5 1363 254 330 18 0 chr1 102028876 102028985 -95166447 - Lx4B LINE L1 -5 6995 6885 5 1363 972 215 39 12 chr1 102029015 102029241 -95166191 - RLTR20B3 LTR ERVK -44 533 272 5 1363 6759 202 37 12 chr1 102029246 102031265 -95164167 - Lx4B LINE L1 -456 6602 4503 5 1363 2143 124 3 16 chr1 102031266 102031585 -95163847 + MTB LTR MaLR 34 348 -52 5 1363 2254 137 3 0 chr1 102031603 102031975 -95163457 + MTB-int LTR MaLR 1 373 -725 5 1363 2973 15 0 0 chr1 102031975 102032315 -95163117 - L1_Mm LINE L1 -289 5594 5255 6 1363 1794 52 13 9 chr1 102032315 102032548 -95162884 + L1Md_T LINE L1 6349 6582 0 6 1363 186 43 0 0 chr1 102032573 102032596 -95162836 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1363 3354 153 44 114 chr1 102032596 102032614 -95162818 + MTB-int LTR MaLR 359 376 -722 5 1363 4105 152 12 7 chr1 102032614 102033295 -95162137 + Lx LINE L1 5960 6643 -11 6 1363 711 24 0 0 chr1 102033295 102033380 -95162052 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 1363 3354 153 44 114 chr1 102033380 102034156 -95161276 + MTB-int LTR MaLR 377 1096 -2 5 1363 2665 97 13 15 chr1 102034158 102034555 -95160877 + MTB LTR MaLR 3 398 -2 5 1363 948 175 0 0 chr1 102034586 102034786 -95160646 - Lx4B LINE L1 -5677 1307 1108 5 1363 4556 56 2 0 chr1 102034816 102035388 -95160044 - L1Md_F2 LINE L1 -3 6579 6007 6 1363 606 386 4 22 chr1 102035540 102035810 -95159622 - B4A SINE B4 0 292 28 6 1363 507 164 0 0 chr1 102036298 102036402 -95159030 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1363 1105 102 0 0 chr1 102036436 102036583 -95158849 - B1_Mus2 SINE Alu 0 147 1 6 1363 632 299 9 96 chr1 102036668 102036829 -95158603 - ID_B1 SINE B4 -20 204 58 6 1363 402 53 0 0 chr1 102036829 102036886 -95158546 - L1_Mus2 LINE L1 -1 6565 6509 7 1363 632 299 9 96 chr1 102036886 102036942 -95158490 - ID SINE ID -167 57 6 6 1363 753 33 0 0 chr1 102037251 102037343 -95158089 + (TC)n Simple_repeat Simple_repeat 1 92 0 7 1363 339 209 9 18 chr1 102038049 102038161 -95157271 + CT-rich Low_complexity Low_complexity 5 115 0 7 1363 243 0 0 0 chr1 102038964 102038991 -95156441 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1363 1500 168 48 78 chr1 102038991 102039326 -95156106 - ORR1A4 LTR MaLR -4 325 1 7 1363 354 129 0 0 chr1 102039326 102039388 -95156044 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1363 429 296 67 30 chr1 102039534 102039698 -95155734 - B4A SINE B4 -118 174 5 7 1363 515 302 136 62 chr1 102040480 102040819 -95154613 - MTE2b LTR MaLR -6 373 10 7 1363 192 163 0 0 chr1 102041093 102041136 -95154296 + T-rich Low_complexity Low_complexity 1 43 0 7 1363 207 88 29 0 chr1 102041341 102041375 -95154057 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1363 629 333 43 0 chr1 102041389 102041599 -95153833 - B4A SINE B4 -62 230 12 8 1363 212 143 18 0 chr1 102041903 102041959 -95153473 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 8 1363 231 294 11 23 chr1 102042080 102042167 -95153265 + Lx8 LINE L1 7386 7471 -2 8 1363 308 345 71 65 chr1 102042667 102042822 -95152610 - HAL1-3A_ME LINE L1 -419 2439 2284 8 1363 275 281 21 41 chr1 102042868 102042972 -95152460 - PB1D10 SINE Alu -1 116 17 8 1363 317 366 58 64 chr1 102043146 102043318 -95152114 - B4A SINE B4 -117 175 5 8 1363 6491 59 27 12 chr1 102043969 102044824 -95150608 - L1Md_F2 LINE L1 -12 6570 5703 8 1363 313 289 0 0 chr1 102046133 102046209 -95149223 - RMER15 LTR ERVL -108 467 392 8 1363 259 326 51 0 chr1 102046838 102046936 -95148496 + PB1D10 SINE Alu 13 115 -2 8 1363 234 303 0 13 chr1 102047289 102047366 -95148066 + GA-rich Low_complexity Low_complexity 2 77 0 8 1363 293 188 0 28 chr1 102047526 102047597 -95147835 + C-rich Low_complexity Low_complexity 4 72 0 9 1363 2920 121 11 13 chr1 102047812 102048273 -95147159 - L1_Mus4 LINE L1 0 6636 6177 9 1363 1582 65 9 0 chr1 102048271 102048485 -95146947 + L1Md_F2 LINE L1 6367 6582 0 9 1363 21091 170 25 55 chr1 102048490 102052658 -95142774 - L1_Mus4 LINE L1 -445 6191 2123 9 1363 1683 89 14 94 chr1 102052658 102052955 -95142477 + L1Md_F2 LINE L1 6304 6576 -6 9 1363 21091 191 18 44 chr1 102052955 102054663 -95140769 - L1_Mus4 LINE L1 -3761 2122 495 9 1363 574 298 15 20 chr1 102054823 102055018 -95140414 - B3A SINE B2 0 198 5 9 1363 899 244 19 9 chr1 102055414 102055629 -95139803 - URR1A DNA MER1_type -9 217 1 9 1363 560 191 52 0 chr1 102055635 102055750 -95139682 - L1_Mur2 LINE L1 -725 5152 5032 9 1363 248 118 0 0 chr1 102056048 102056082 -95139350 - L1_Mur1 LINE L1 -733 5153 5120 9 1363 378 291 82 4 chr1 102057798 102057928 -95137504 + RSINE1 SINE B4 5 146 -19 9 1363 617 86 0 11 chr1 102058087 102058181 -95137251 + (CA)n Simple_repeat Simple_repeat 2 94 0 9 1363 383 327 27 0 chr1 102058402 102058512 -95136920 + B4A SINE B4 3 115 -177 1 1363 633 14 0 0 chr1 102059801 102059875 -95135557 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1363 548 357 18 25 chr1 102059878 102060124 -95135308 + B4 SINE B4 14 251 -41 1 1363 389 361 0 8 chr1 102060119 102060242 -95135190 + B4A SINE B4 163 284 -8 1 1363 211 125 0 59 chr1 102063451 102063502 -95131930 + CT-rich Low_complexity Low_complexity 1 48 0 1 1363 1250 160 5 0 chr1 102063550 102063769 -95131663 - Lx2 LINE L1 0 6997 6778 1 1363 6512 141 18 5 chr1 102063771 102064898 -95130534 - Lx2 LINE L1 -353 6644 5505 1 1363 531 0 0 0 chr1 102064926 102064985 -95130447 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1363 396 46 0 30 chr1 102064994 102065061 -95130371 - L1Md_F2 LINE L1 -5 6577 6513 1 1363 303 293 43 8 chr1 102065237 102065354 -95130078 - B4A SINE B4 -5 287 167 1 1363 3451 211 105 53 chr1 102065758 102066708 -95128724 - RLTR25B LTR ERVK -28 1000 1 1 1363 414 0 0 0 chr1 102067270 102067316 -95128116 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1363 255 31 0 0 chr1 102067377 102067409 -95128023 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1363 649 357 28 38 chr1 102067438 102067729 -95127703 - B4A SINE B4 -4 288 1 1 1363 1768 156 57 153 chr1 102068205 102068681 -95126751 + RLTR23 LTR ERV1 1 430 0 1 1363 856 292 61 75 chr1 102068853 102069212 -95126220 + ORR1E LTR MaLR 6 359 0 1 1363 27 49 0 0 chr1 102069396 102069437 -95125995 + AT_rich Low_complexity Low_complexity 1 41 0 1 1363 243 88 0 0 chr1 102069803 102069837 -95125595 + (CTG)n Simple_repeat Simple_repeat 1 34 0 1 1363 637 332 26 26 chr1 102069863 102070092 -95125340 - B4A SINE B4 0 292 64 1 1363 680 35 11 0 chr1 102070611 102070698 -95124734 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1363 342 0 0 0 chr1 102070698 102070736 -95124696 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1363 692 247 197 0 chr1 102070860 102071038 -95124394 - B3 SINE B2 -2 214 2 1 1363 852 301 91 5 chr1 102071038 102071385 -95124047 + MTE2b LTR MaLR 10 379 0 1 1363 243 0 0 0 chr1 102071915 102071942 -95123490 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1363 180 0 0 0 chr1 102071942 102071962 -95123470 + (TGG)n Simple_repeat Simple_repeat 3 22 0 1 1363 1135 109 22 28 chr1 102071971 102072151 -95123281 - B2_Mm1t SINE B2 -14 179 1 1 1363 243 0 0 0 chr1 102072600 102072627 -95122805 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1363 494 330 28 75 chr1 102072687 102072939 -95122493 - B4A SINE B4 -28 264 25 1 1363 1300 238 68 51 chr1 102072981 102073393 -95122039 + MTD LTR MaLR 1 419 0 1 1363 28513 91 16 75 chr1 102073552 102078935 -95116497 + L1Md_F2 LINE L1 515 5585 -298 1 1363 6717 97 27 2 chr1 102078936 102079890 -95115542 + L1Md_F2 LINE L1 5587 6564 -18 1 1363 300 111 0 0 chr1 102079891 102079936 -95115496 + (TAA)n Simple_repeat Simple_repeat 1 45 0 1 1363 201 74 0 0 chr1 102080272 102080299 -95115133 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1363 1363 234 37 43 chr1 102080646 102081021 -95114411 + ORR1D1 LTR MaLR 1 373 -1 1 1363 216 219 8 15 chr1 102081120 102081250 -95114182 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 1363 606 118 0 0 chr1 102081492 102081594 -95113838 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 1363 11694 205 45 130 chr1 102082502 102082847 -95112585 - L1VL2 LINE L1 -780 5106 4741 1 1363 222 37 0 0 chr1 102082847 102082874 -95112558 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1363 11694 205 45 130 chr1 102082874 102083906 -95111526 - L1VL2 LINE L1 -1146 4740 3727 1 1363 949 152 7 0 chr1 102083906 102084051 -95111381 - B1_Mus1 SINE Alu -2 146 1 1 1363 11694 182 42 99 chr1 102084051 102085085 -95110347 - L1VL2 LINE L1 -2160 3726 2673 1 1363 512 296 35 2 chr1 102085085 102085237 -95110195 - RLTR26 LTR ERVK -183 775 546 1 1363 896 234 24 16 chr1 102085232 102085487 -95109945 - RLTR26 LTR ERVK -566 243 1 1 1363 11694 182 42 99 chr1 102085487 102087699 -95107733 - L1VL2 LINE L1 -2160 2672 415 1 1363 667 117 10 10 chr1 102087699 102087803 -95107629 - L1VL2 LINE L1 -6149 485 382 1 1363 266 62 0 0 chr1 102087803 102087835 -95107597 - L1VL2 LINE L1 -6147 188 157 1 1363 27 49 0 0 chr1 102088065 102088106 -95107326 + AT_rich Low_complexity Low_complexity 1 41 0 1 1363 279 291 95 19 chr1 102088146 102088251 -95107181 - B3 SINE B2 -97 119 7 1 1363 766 274 96 96 chr1 102089615 102089991 -95105441 - MTE2a LTR MaLR 0 379 4 1 1363 792 287 57 0 chr1 102090159 102090389 -95105043 - MTEa LTR MaLR -17 362 120 1 1363 316 292 77 52 chr1 102090449 102090604 -95104828 + B3A SINE B2 42 200 -16 1 1363 6456 160 17 11 chr1 102090959 102092103 -95103329 - Lx2 LINE L1 0 6997 5847 1 1363 389 359 122 0 chr1 102092964 102093120 -95102312 + B3A SINE B2 2 176 -22 1 1363 236 359 0 0 chr1 102093312 102093376 -95102056 + ID2 SINE ID 20 83 0 1 1363 670 323 34 8 chr1 102093542 102093779 -95101653 - B4A SINE B4 0 292 50 1 1363 265 320 94 57 chr1 102093702 102093808 -95101624 - B3A SINE B2 -78 120 11 1 1363 1902 224 72 22 chr1 102094419 102094920 -95100512 - RLTR11A LTR ERVK -2 526 1 1 1363 1222 233 27 124 chr1 102095059 102095535 -95099897 - RLTR23 LTR ERV1 0 430 1 1 1363 9744 71 4 0 chr1 102095623 102096902 -95098530 - L1_Mm LINE L1 -451 5432 4149 1 1363 3651 57 27 4 chr1 102096902 102097379 -95098053 + L1Md_F2 LINE L1 6095 6582 0 1 1363 240 59 0 0 chr1 102097523 102097557 -95097875 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1363 329 143 71 0 chr1 102097633 102097689 -95097743 - RLTR4_MM-int LTR ERV1 -291 7487 7428 1 1363 6711 51 11 4 chr1 102097689 102098534 -95096898 + L1Md_F3 LINE L1 4736 5586 -297 1 1363 7971 46 2 9 chr1 102098534 102099539 -95095893 + L1Md_F3 LINE L1 5587 6584 0 1 1363 300 330 28 0 chr1 102099553 102099659 -95095773 - RNERVK23-int LTR ERVK -698 7519 7411 1 1363 253 341 23 0 chr1 102099659 102099682 -95095750 - RLTR4_MM-int LTR ERV1 -357 7244 7113 1 1363 940 308 65 29 chr1 102101319 102101767 -95093665 - RLTR4_MM-int LTR ERV1 -2307 5294 4831 1 1363 379 299 29 46 chr1 102102101 102102276 -95093156 - RLTR4_MM-int LTR ERV1 -3282 4274 4103 1 1363 2832 90 3 0 chr1 102102532 102102920 -95092512 + L1_Mus2 LINE L1 6178 6566 0 1 1363 592 337 88 60 chr1 102103972 102104076 -95091356 - B4A SINE B4 0 292 176 1 1363 2518 138 18 2 chr1 102104076 102104477 -95090955 + MTB_Mm LTR MaLR 1 407 0 1 1363 592 337 88 60 chr1 102104477 102104656 -95090776 - B4A SINE B4 -117 175 1 1 1364 31 0 0 0 chr1 102105191 102105222 -95090210 + AT_rich Low_complexity Low_complexity 1 31 0 1 1364 383 341 109 39 chr1 102105722 102105978 -95089454 - B4A SINE B4 -18 274 1 1 1364 446 287 217 33 chr1 102106402 102106582 -95088850 + ID_B1 SINE B4 8 220 -4 1 1364 196 137 39 0 chr1 102106629 102106680 -95088752 + GA-rich Low_complexity Low_complexity 2 54 0 1 1364 332 303 7 102 chr1 102106729 102106876 -95088556 + B3A SINE B2 66 198 0 1 1364 337 360 88 62 chr1 102107061 102107221 -95088211 - B4A SINE B4 -62 230 67 1 1364 549 0 0 0 chr1 102107231 102107292 -95088140 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1364 442 366 56 0 chr1 102107442 102107603 -95087829 - B4 SINE B4 -122 170 1 1 1364 666 364 21 18 chr1 102107945 102108225 -95087207 - B4A SINE B4 -10 282 2 1 1364 944 294 42 32 chr1 102108979 102109264 -95086168 - B4 SINE B4 0 292 5 1 1364 27 29 0 0 chr1 102109565 102109599 -95085833 + AT_rich Low_complexity Low_complexity 1 34 0 1 1364 291 208 144 108 chr1 102109776 102109943 -95085489 + RLTR13D3 LTR ERVK 942 1114 0 1 1364 1041 282 24 60 chr1 102110718 102111088 -95084344 - ORR1E LTR MaLR -2 357 1 1 1364 310 308 48 27 chr1 102111633 102111835 -95083597 - L1M2 LINE L1 -445 5852 5647 1 1364 212 171 0 0 chr1 102112084 102112119 -95083313 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 1 1364 572 348 54 62 chr1 102112133 102112409 -95083023 - B4A SINE B4 -13 279 6 1 1364 552 89 0 0 chr1 102113183 102113262 -95082170 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1364 1649 184 0 30 chr1 102113262 102113565 -95081867 + RLTR26 LTR ERVK 195 488 -154 1 1364 556 155 0 58 chr1 102113777 102113880 -95081552 + B1_Mur3 SINE Alu 46 142 -7 1 1364 251 304 0 0 chr1 102113938 102114007 -95081425 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1364 412 279 14 122 chr1 102114008 102114046 -95081386 - RSINE1 SINE B4 -1 164 128 1 1364 498 17 0 0 chr1 102114046 102114105 -95081327 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1364 412 279 14 122 chr1 102114105 102114205 -95081227 - RSINE1 SINE B4 -38 127 41 1 1364 253 328 160 0 chr1 102114547 102114678 -95080754 + B4A SINE B4 141 292 0 1 1364 292 272 0 55 chr1 102114680 102114714 -95080718 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1 1364 522 0 0 0 chr1 102114714 102114772 -95080660 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1364 292 272 0 55 chr1 102114772 102114846 -95080586 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 1 1364 216 235 21 16 chr1 102114848 102115034 -95080398 + CT-rich Low_complexity Low_complexity 1 187 0 1 1364 1158 78 0 0 chr1 102116158 102116338 -95079094 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1364 556 292 117 19 chr1 102116374 102116639 -95078793 - B4A SINE B4 0 292 2 1 1364 527 284 68 93 chr1 102117505 102117519 -95077913 - B4A SINE B4 -6 286 275 1 1364 522 70 0 0 chr1 102117519 102117590 -95077842 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1364 527 284 68 93 chr1 102117590 102117823 -95077609 - B4A SINE B4 -18 274 45 1 1364 201 147 0 0 chr1 102117930 102117964 -95077468 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1 1364 412 405 26 38 chr1 102119352 102119449 -95075983 + B4A SINE B4 27 123 -169 1 1364 771 69 0 0 chr1 102119449 102119551 -95075881 + (GGA)n Simple_repeat Simple_repeat 1 102 0 1 1364 412 405 26 38 chr1 102119551 102119720 -95075712 + B4A SINE B4 124 290 -2 1 1364 459 0 0 0 chr1 102119742 102119793 -95075639 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1364 21 0 0 0 chr1 102120064 102120085 -95075347 + AT_rich Low_complexity Low_complexity 1 21 0 1 1364 204 205 0 0 chr1 102120110 102120149 -95075283 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1364 352 281 50 66 chr1 102120399 102120597 -95074835 - RLTR46 LTR ERVK 0 320 126 1 1364 34945 182 29 18 chr1 102120725 102124196 -95071236 - IAPEY3-int LTR ERVK 0 7680 4113 1 1364 188 221 52 113 chr1 102124196 102124293 -95071139 - L3 LINE CR1 -460 4029 3939 1 1364 34945 182 29 18 chr1 102124293 102128052 -95067380 - IAPEY3-int LTR ERVK 0 4112 246 1 1364 260 240 13 13 chr1 102128037 102128113 -95067319 - IAPLTR3-int LTR ERVK -6375 446 371 1 1364 352 281 50 66 chr1 102128391 102128589 -95066843 - RLTR46 LTR ERVK 0 320 126 2 1364 472 383 5 20 chr1 102128940 102129137 -95066295 - B3A SINE B2 0 198 5 2 1364 1009 68 0 0 chr1 102129226 102129359 -95066073 + B1_Mus1 SINE Alu 16 148 0 2 1364 228 128 43 0 chr1 102129359 102129406 -95066026 + A-rich Low_complexity Low_complexity 4 52 0 2 1364 417 39 0 0 chr1 102129513 102129564 -95065868 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1364 288 281 45 115 chr1 102130097 102130254 -95065178 - MLT2C1 LTR ERVL -2 561 416 2 1364 469 328 6 0 chr1 102130356 102130533 -95064899 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1364 646 307 91 29 chr1 102130535 102130810 -95064622 - B4 SINE B4 0 292 1 2 1364 571 299 49 18 chr1 102130811 102131036 -95064396 - MLT2C1 LTR ERVL -165 232 1 2 1364 688 345 89 4 chr1 102131292 102131539 -95063893 + B4 SINE B4 2 269 -23 2 1364 414 0 0 0 chr1 102131539 102131585 -95063847 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1364 2158 69 34 270 chr1 102132164 102132642 -95062790 + RLTR10C LTR ERVK 1 436 0 2 1364 2246 187 61 74 chr1 102132846 102133372 -95062060 + RLTR28 LTR ERVL 1 519 -5 2 1364 1580 192 0 99 chr1 102134128 102134481 -95060951 - ORR1A3 LTR MaLR -8 318 1 2 1364 183 42 0 0 chr1 102134813 102134837 -95060595 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 2 1364 2917 32 3 0 chr1 102135148 102135492 -95059940 - L1Md_F2 LINE L1 -18 6564 6220 2 1364 224 384 34 7 chr1 102135938 102136085 -95059347 + B4A SINE B4 90 240 -52 2 1364 252 0 0 0 chr1 102136170 102136198 -95059234 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1364 872 246 120 60 chr1 102136386 102136736 -95058696 + MTEa LTR MaLR 3 373 -6 2 1364 890 71 8 0 chr1 102136993 102137120 -95058312 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1364 275 184 57 28 chr1 102137198 102137304 -95058128 + (TTATA)n Simple_repeat Simple_repeat 1 109 0 2 1364 516 108 37 37 chr1 102137309 102137472 -95057960 + (TA)n Simple_repeat Simple_repeat 2 164 0 2 1364 276 188 0 0 chr1 102138354 102138402 -95057030 - B4 SINE B4 -69 223 176 2 1364 241 211 0 19 chr1 102138400 102138453 -95056979 - Arthur1C DNA Tip100 -309 54 3 2 1364 457 354 57 49 chr1 102138521 102138722 -95056710 + B4 SINE B4 16 223 -69 2 1364 1045 90 0 0 chr1 102138722 102138855 -95056577 + B1_Mus1 SINE Alu 4 136 -12 2 1364 387 0 0 0 chr1 102138855 102138898 -95056534 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1364 457 354 57 49 chr1 102138898 102138939 -95056493 + B4 SINE B4 224 260 -32 2 1364 369 0 0 0 chr1 102139403 102139444 -95055988 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1364 795 304 67 65 chr1 102140102 102140508 -95054924 + MTE2a LTR MaLR 1 406 -13 2 1364 252 0 0 0 chr1 102140735 102140763 -95054669 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1364 828 174 0 0 chr1 102140763 102140918 -95054514 + (TA)n Simple_repeat Simple_repeat 1 155 0 2 1364 4669 87 6 2 chr1 102141236 102141881 -95053551 - L1_Mus2 LINE L1 -1 6565 5918 2 1364 406 83 0 0 chr1 102141881 102141941 -95053491 + L1_Mus2 LINE L1 5887 5946 -620 2 1364 496 206 38 0 chr1 102142215 102142346 -95053086 - Lx9 LINE L1 -2 7642 7507 2 1364 728 335 52 9 chr1 102142435 102142667 -95052765 + B4A SINE B4 1 242 -50 2 1364 468 328 15 0 chr1 102142670 102142801 -95052631 + RSINE1 SINE B4 19 151 -14 2 1364 342 138 0 0 chr1 102142900 102142958 -95052474 + (CATA)n Simple_repeat Simple_repeat 2 59 0 2 1364 1102 146 34 0 chr1 102143542 102143747 -95051685 - Lx2A1 LINE L1 -3 7005 6794 2 1364 216 0 0 0 chr1 102143754 102143778 -95051654 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1364 349 292 145 18 chr1 102144340 102144534 -95050898 - B4A SINE B4 -12 280 3 2 1364 392 294 0 52 chr1 102145210 102145325 -95050107 - B1F2 SINE Alu 0 149 41 2 1364 396 0 0 0 chr1 102145377 102145421 -95050011 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 2 1364 357 123 0 0 chr1 102145858 102145923 -95049509 + (CAAT)n Simple_repeat Simple_repeat 2 66 0 2 1364 287 225 98 24 chr1 102146041 102146123 -95049309 + B4 SINE B4 2 89 -203 2 1364 913 267 62 15 chr1 102146267 102146526 -95048906 + MTC LTR MaLR 1 271 -150 2 1364 254 301 104 56 chr1 102146681 102146825 -95048607 - MLT1F1 LTR MaLR -306 263 113 2 1364 467 275 35 21 chr1 102146787 102146932 -95048500 + MTC LTR MaLR 229 375 -4 2 1364 514 346 6 31 chr1 102147137 102147298 -95048134 - RSINE1 SINE B4 -6 159 3 2 1364 3030 245 53 86 chr1 102148004 102149059 -95046373 - RMER1B Other Other -3 1063 44 2 1364 635 299 37 0 chr1 102149988 102150152 -95045280 + B4 SINE B4 4 173 -119 2 1364 198 0 0 0 chr1 102150190 102150212 -95045220 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1364 204 40 0 0 chr1 102150246 102150271 -95045161 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1364 231 36 0 0 chr1 102150520 102150548 -95044884 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1364 207 100 0 0 chr1 102150601 102150631 -95044801 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 2 1364 417 321 52 29 chr1 102150654 102150827 -95044605 + MTE2a LTR MaLR 10 186 -233 2 1364 1407 280 77 8 chr1 102150827 102151219 -95044213 - MTD LTR MaLR 0 419 1 2 1364 576 284 34 34 chr1 102151297 102151472 -95043960 + MTE2a LTR MaLR 205 379 0 2 1364 182 62 0 30 chr1 102151934 102151967 -95043465 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1364 22 35 0 0 chr1 102151977 102152006 -95043426 + AT_rich Low_complexity Low_complexity 1 29 0 2 1364 2086 79 14 20 chr1 102152028 102152325 -95043107 - L1_Mus1 LINE L1 0 6567 6273 2 1364 298 361 47 110 chr1 102152687 102153088 -95042344 - RMER5 LTR ERV1 -20 514 139 2 1364 198 167 0 0 chr1 102153192 102153228 -95042204 + (CAT)n Simple_repeat Simple_repeat 2 37 0 2 1364 346 305 0 78 chr1 102153340 102153443 -95041989 + RSINE1 SINE B4 30 124 -41 2 1364 450 0 0 0 chr1 102153640 102153690 -95041742 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1364 366 23 0 0 chr1 102153690 102153732 -95041700 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1364 423 52 0 0 chr1 102153735 102153793 -95041639 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1364 433 322 112 20 chr1 102155405 102155557 -95039875 + B4A SINE B4 1 166 -126 2 1364 389 352 35 18 chr1 102155924 102156207 -95039225 + B4A SINE B4 1 288 -4 2 1364 249 398 124 0 chr1 102156604 102156717 -95038715 - RSINE1 SINE B4 -37 128 2 2 1364 21 0 0 0 chr1 102156726 102156747 -95038685 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 259 305 15 23 chr1 102157874 102158005 -95037427 + (TTTA)n Simple_repeat Simple_repeat 1 130 0 2 1364 31 0 0 0 chr1 102158098 102158129 -95037303 + AT_rich Low_complexity Low_complexity 1 31 0 2 1364 709 311 90 30 chr1 102158208 102158476 -95036956 - B4 SINE B4 0 292 9 2 1364 459 346 50 25 chr1 102159024 102159184 -95036248 - B4A SINE B4 -128 164 1 2 1364 198 312 86 12 chr1 102159279 102159360 -95036072 - MIR SINE MIR -82 180 94 2 1364 915 288 70 62 chr1 102159755 102160125 -95035307 + MTE2b LTR MaLR 1 373 -6 2 1364 993 303 23 0 chr1 102160966 102161227 -95034205 + MTE2b LTR MaLR 15 281 -98 2 1364 474 333 142 11 chr1 102162411 102162723 -95032709 + ORR1E LTR MaLR 1 375 -4 2 1364 2594 88 2 38 chr1 102162941 102163340 -95032092 - L1Md_F2 LINE L1 0 6582 6198 2 1364 192 305 81 47 chr1 102163350 102163522 -95031910 + MIR SINE MIR 51 228 -34 2 1364 211 317 0 10 chr1 102163609 102163711 -95031721 + CT-rich Low_complexity Low_complexity 4 104 0 2 1364 232 91 22 22 chr1 102163747 102163792 -95031640 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1364 222 339 15 0 chr1 102164036 102164101 -95031331 - B4 SINE B4 -217 75 10 2 1364 264 384 110 23 chr1 102164137 102164401 -95031031 - MTEa LTR MaLR -12 367 81 2 1364 322 289 9 9 chr1 102164795 102164910 -95030522 + CT-rich Low_complexity Low_complexity 2 116 0 2 1364 633 329 152 7 chr1 102165100 102165376 -95030056 - MTEa LTR MaLR -19 360 45 2 1364 3870 83 19 6 chr1 102165447 102165982 -95029450 - L1Md_F2 LINE L1 -3 6579 6038 2 1364 703 194 60 39 chr1 102166514 102166696 -95028736 - B2_Mm2 SINE B2 -9 186 1 2 1364 339 25 0 0 chr1 102166898 102166938 -95028494 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1364 532 118 0 0 chr1 102168150 102168235 -95027197 + L1_Mur1 LINE L1 4246 4330 -1556 2 1364 419 95 45 62 chr1 102168235 102168347 -95027085 - RLTR10-int LTR ERVK -1068 919 810 2 1364 1325 109 9 5 chr1 102168810 102169022 -95026410 - RLTR10-int LTR ERVK -1438 549 337 2 1364 334 389 48 32 chr1 102169028 102169060 -95026372 - ORR1D1 LTR MaLR -88 282 249 2 1364 2704 105 51 0 chr1 102169060 102169451 -95025981 - RLTR10A LTR ERVK 0 411 1 2 1364 417 332 68 15 chr1 102169451 102169684 -95025748 - ORR1D1 LTR MaLR -122 248 2 2 1364 24 91 0 0 chr1 102169984 102170050 -95025382 + AT_rich Low_complexity Low_complexity 1 66 0 2 1364 351 0 0 0 chr1 102170072 102170111 -95025321 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1364 396 329 51 18 chr1 102170396 102170613 -95024819 + MER2 DNA MER2_type 87 310 -35 2 1364 992 224 199 52 chr1 102171203 102171531 -95023901 + MTD LTR MaLR 26 411 -8 2 1364 23 0 0 0 chr1 102171705 102171728 -95023704 + AT_rich Low_complexity Low_complexity 1 23 0 2 1364 633 333 5 46 chr1 102172004 102172221 -95023211 - ID_B1 SINE B4 -3 221 14 2 1364 972 182 88 80 chr1 102172230 102172493 -95022939 - RLTR25B LTR ERVK 0 1103 839 2 1364 297 0 0 0 chr1 102172617 102172650 -95022782 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1364 1953 200 105 5 chr1 102172904 102173129 -95022303 - RLTR25B LTR ERVK -166 862 615 2 1364 4403 50 0 0 chr1 102173129 102173665 -95021767 + L1Md_F2 LINE L1 6034 6569 -13 2 1364 1953 200 105 5 chr1 102173665 102173876 -95021556 - RLTR25B LTR ERVK -414 614 383 2 1364 537 182 73 0 chr1 102173879 102173989 -95021443 - Lx9 LINE L1 -178 7466 7349 2 1364 356 325 166 71 chr1 102177418 102177586 -95017846 - RLTR23 LTR ERV1 -28 402 223 2 1364 1657 214 34 95 chr1 102177586 102178061 -95017371 - RLTR41 LTR ERV1 0 446 1 3 1364 356 325 166 71 chr1 102178061 102178259 -95017173 - RLTR23 LTR ERV1 -208 222 1 2 1364 309 316 0 0 chr1 102181301 102181377 -95014055 - RLTR19-int LTR ERVK -1686 4451 4376 3 1364 266 328 16 16 chr1 102181303 102181424 -95014008 - RLTR14-int LTR ERV1 -1469 3848 3728 3 1364 1132 293 28 13 chr1 102181567 102182037 -95013395 - MMERGLN-int LTR ERV1 -2321 5235 4759 3 1364 440 307 44 18 chr1 102182606 102182835 -95012597 - MMERGLN-int LTR ERV1 -3312 4289 4055 3 1364 607 246 47 56 chr1 102182989 102183282 -95012150 - RMER17C LTR ERVK -285 466 1 3 1364 1920 176 28 0 chr1 102183283 102183635 -95011797 - RMER17C-int LTR ERVK 0 3238 2877 3 1364 495 202 0 0 chr1 102183653 102183757 -95011675 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1364 7479 150 69 67 chr1 102183758 102185304 -95010128 - RMER17C-int LTR ERVK -339 2899 1383 3 1364 758 41 10 0 chr1 102185304 102185402 -95010030 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 3 1364 7479 150 69 67 chr1 102185402 102185575 -95009857 - RMER17C-int LTR ERVK -1856 1382 1179 3 1364 1703 222 97 55 chr1 102185597 102186193 -95009239 - RMER17C-int LTR ERVK -2617 621 1 3 1364 1301 213 47 56 chr1 102186200 102186406 -95009026 - RMER17C LTR ERVK -2 408 212 3 1364 198 0 0 0 chr1 102186406 102186428 -95009004 + (CAGAGA)n Simple_repeat Simple_repeat 2 23 0 3 1364 1301 213 47 56 chr1 102186428 102186629 -95008803 - RMER17C LTR ERVK -199 211 5 3 1364 792 260 4 34 chr1 102186750 102186989 -95008443 - Tigger15a DNA TcMar -16 699 468 3 1364 486 0 0 0 chr1 102187366 102187420 -95008012 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1364 739 307 25 21 chr1 102187980 102188263 -95007169 - Lx8 LINE L1 -84 7389 7106 3 1364 3637 130 32 30 chr1 102188263 102188857 -95006575 - RLTR1D LTR ERV1 0 605 11 3 1364 563 356 28 12 chr1 102188946 102189267 -95006165 - Lx8 LINE L1 -554 6919 6594 3 1364 584 286 79 30 chr1 102190064 102190503 -95004929 + L1MB1 LINE L1 5345 5838 -474 3 1364 278 337 53 18 chr1 102190521 102190690 -95004742 + RMER12 LTR ERVK 683 857 -465 3 1364 297 151 0 0 chr1 102191213 102191266 -95004166 + (CTA)n Simple_repeat Simple_repeat 1 53 0 3 1364 2184 104 9 0 chr1 102191535 102191851 -95003581 - ORR1A2 LTR MaLR -8 319 1 3 1364 582 15 0 0 chr1 102192242 102192309 -95003123 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1364 360 338 103 22 chr1 102192519 102192655 -95002777 + RSINE1 SINE B4 5 151 -14 3 1364 1705 161 97 19 chr1 102192994 102193356 -95002076 + ORR1B1 LTR MaLR 3 392 -2 3 1364 328 337 113 5 chr1 102193562 102193747 -95001685 - ID_B1 SINE B4 -19 205 1 3 1364 211 318 37 67 chr1 102194843 102194978 -95000454 + MIR3 SINE MIR 64 194 -14 3 1364 267 323 0 44 chr1 102195264 102195332 -95000100 + ID4 SINE ID 15 79 -4 3 1364 609 344 41 73 chr1 102195454 102195768 -94999664 - MTEa LTR MaLR -75 304 1 3 1364 3697 228 43 13 chr1 102195775 102196676 -94998756 + Lx7 LINE L1 6078 7005 -691 3 1364 653 169 25 8 chr1 102196676 102196795 -94998637 - ORR1B2 LTR MaLR 0 367 247 3 1364 577 180 185 65 chr1 102196794 102196858 -94998574 - ORR1B2-int LTR MaLR -1170 339 282 3 1364 444 62 0 0 chr1 102196858 102196922 -94998510 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 3 1364 577 180 185 65 chr1 102196922 102197041 -94998391 - ORR1B2-int LTR MaLR -1228 281 134 3 1364 390 250 62 9 chr1 102197093 102197206 -94998226 + Lx7 LINE L1 7213 7331 -365 3 1364 235 290 65 61 chr1 102197252 102197498 -94997934 + Lx7 LINE L1 7442 7688 -8 3 1364 749 340 104 58 chr1 102197537 102198331 -94997101 - MTE-int LTR MaLR -50 1530 460 3 1364 482 330 128 5 chr1 102198404 102198608 -94996824 - MTE-int LTR MaLR -1281 299 71 3 1364 22 0 0 0 chr1 102198670 102198692 -94996740 + AT_rich Low_complexity Low_complexity 1 22 0 3 1364 3817 211 65 18 chr1 102199202 102200070 -94995362 - RMER13B LTR ERVK 0 908 1 3 1364 269 26 0 26 chr1 102200540 102200579 -94994853 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1364 762 270 24 14 chr1 102200915 102201122 -94994310 + B3 SINE B2 5 213 -3 3 1364 2164 224 59 8 chr1 102201168 102201658 -94993774 - RLTR11A LTR ERVK 0 528 14 3 1364 1017 286 111 17 chr1 102201855 102202227 -94993205 - MTD LTR MaLR -29 390 18 3 1364 392 331 23 49 chr1 102203007 102203204 -94992228 + B4A SINE B4 1 184 -108 3 1364 7964 34 1 0 chr1 102203229 102204525 -94990907 - L1Md_A LINE L1 0 6582 5286 3 1364 390 21 0 0 chr1 102204602 102204649 -94990783 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1364 749 194 6 0 chr1 102204651 102204816 -94990616 + GA-rich Low_complexity Low_complexity 1 166 0 3 1364 1701 230 5 19 chr1 102205636 102206008 -94989424 - MTB_Mm LTR MaLR -11 396 30 3 1364 2826 191 135 3 chr1 102206213 102206800 -94988632 + RLTR33 LTR ERVK 15 678 0 3 1364 324 244 80 68 chr1 102208350 102208438 -94986994 + B3A SINE B2 6 94 -104 3 1364 29 47 0 0 chr1 102208514 102208557 -94986875 + AT_rich Low_complexity Low_complexity 1 43 0 3 1364 254 220 18 27 chr1 102208590 102208702 -94986730 + GA-rich Low_complexity Low_complexity 2 112 0 3 1364 12963 119 3 11 chr1 102208702 102210873 -94984559 + L1_Mus1 LINE L1 2510 4662 -1221 3 1364 38786 15 2 6 chr1 102210873 102217310 -94978122 - L1Md_A LINE L1 0 6582 173 3 1364 7620 117 1 43 chr1 102217311 102217596 -94977836 + L1_Mus1 LINE L1 4650 4900 -983 3 1364 910 153 15 0 chr1 102217596 102217733 -94977699 - B1_Mus2 SINE Alu -8 139 1 3 1364 7620 117 1 43 chr1 102217733 102217744 -94977688 + L1_Mus1 LINE L1 4901 4901 -982 3 1364 864 77 0 0 chr1 102217744 102217861 -94977571 + (TTTTC)n Simple_repeat Simple_repeat 2 118 0 3 1364 7620 99 5 21 chr1 102217861 102219539 -94975893 + L1_Mus1 LINE L1 4901 6654 0 3 1364 231 271 114 0 chr1 102220151 102220221 -94975211 + ID4 SINE ID 2 79 -4 3 1364 526 301 19 38 chr1 102221039 102221198 -94974234 + B3A SINE B2 43 198 0 3 1364 378 311 115 0 chr1 102221219 102221341 -94974091 - B3A SINE B2 -61 137 2 3 1364 359 98 16 0 chr1 102221892 102221953 -94973479 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1364 184 294 29 14 chr1 102222423 102222492 -94972940 - MIRb SINE MIR -175 93 24 3 1364 297 0 0 0 chr1 102223227 102223260 -94972172 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1364 185 180 0 20 chr1 102223349 102223400 -94972032 + GA-rich Low_complexity Low_complexity 1 50 0 3 1364 239 370 5 0 chr1 102224959 102225053 -94970379 - PB1 SINE Alu -217 97 1 3 1364 281 297 62 43 chr1 102225138 102225300 -94970132 + RMER5 LTR ERV1 33 197 -337 3 1364 189 0 0 0 chr1 102225334 102225355 -94970077 + (TAATG)n Simple_repeat Simple_repeat 3 23 0 3 1364 252 0 0 0 chr1 102225441 102225469 -94969963 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1364 339 85 0 0 chr1 102225766 102225813 -94969619 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 3 1364 1206 230 66 95 chr1 102225818 102225842 -94969590 - RMER10A LTR ERVL -5 437 414 3 1364 1145 103 0 6 chr1 102225842 102226018 -94969414 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 3 1364 1206 230 66 95 chr1 102226018 102226402 -94969030 - RMER10A LTR ERVL -29 413 41 3 1364 268 241 0 22 chr1 102226405 102226494 -94968938 + A-rich Low_complexity Low_complexity 2 88 0 3 1364 29 0 0 0 chr1 102226899 102226928 -94968504 + AT_rich Low_complexity Low_complexity 1 29 0 3 1364 538 360 31 27 chr1 102226988 102227245 -94968187 - B4 SINE B4 -8 284 27 3 1364 21 0 0 0 chr1 102227995 102228016 -94967416 + AT_rich Low_complexity Low_complexity 1 21 0 3 1364 424 300 157 46 chr1 102228048 102228079 -94967353 - B4A SINE B4 -1 291 270 3 1364 576 0 0 0 chr1 102228079 102228143 -94967289 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1364 424 300 157 46 chr1 102228143 102228373 -94967059 - B4A SINE B4 -23 269 1 3 1364 302 376 29 12 chr1 102228750 102228922 -94966510 - MIR SINE MIR -57 205 31 3 1364 559 254 109 82 chr1 102228977 102229134 -94966298 + B3A SINE B2 2 162 -33 3 1364 939 56 0 0 chr1 102229134 102229260 -94966172 + (CA)n Simple_repeat Simple_repeat 1 126 0 3 1364 330 254 109 82 chr1 102229260 102229286 -94966146 + B2_Mm2 SINE B2 163 190 -5 3 1364 536 40 13 0 chr1 102230020 102230095 -94965337 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1364 643 326 45 31 chr1 102230231 102230453 -94964979 - B4 SINE B4 -4 288 64 3 1364 323 328 86 0 chr1 102230884 102231000 -94964432 + Tigger5 DNA MER2_type 118 243 -2163 3 170 21000 189 16 15 chr1 102231241 102237011 -94958421 + Lx2 LINE L1 1226 6995 -2 3 1365 626 330 20 51 chr1 102237027 102237246 -94958186 + B4 SINE B4 49 264 -28 3 1365 396 0 0 0 chr1 102237285 102237329 -94958103 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1365 564 65 0 0 chr1 102238817 102238894 -94956538 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1365 627 235 46 26 chr1 102238897 102239050 -94956382 + ORR1D1 LTR MaLR 27 182 -192 3 1365 326 91 0 18 chr1 102239052 102239108 -94956324 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1365 351 0 0 0 chr1 102239108 102239147 -94956285 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1365 239 412 0 0 chr1 102239233 102239335 -94956097 - PB1 SINE Alu -25 102 1 3 1365 320 337 0 0 chr1 102240250 102240333 -94955099 - B4 SINE B4 -208 84 2 3 1365 873 292 58 72 chr1 102240723 102241099 -94954333 - MTEb LTR MaLR -2 377 7 3 1365 366 125 0 0 chr1 102241666 102241691 -94953741 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1365 546 43 0 0 chr1 102241691 102241760 -94953672 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1365 366 125 0 0 chr1 102241760 102241798 -94953634 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1365 200 132 26 0 chr1 102241822 102241860 -94953572 + T-rich Low_complexity Low_complexity 2 40 0 3 1365 498 312 0 0 chr1 102242122 102242250 -94953182 - MT2A LTR ERVL -71 462 335 3 1365 2948 148 4 23 chr1 102242255 102242740 -94952692 + MT2B LTR ERVL 1 476 -125 3 1365 615 232 13 72 chr1 102242717 102242870 -94952562 + MT2B LTR ERVL 145 288 -313 3 1365 748 141 0 0 chr1 102242873 102242994 -94952438 + MT2B LTR ERVL 481 601 0 3 1365 1309 271 16 0 chr1 102243007 102243321 -94952111 - MT2A LTR ERVL -214 319 1 3 1365 510 264 13 13 chr1 102243324 102243474 -94951958 - L1M2 LINE L1 -664 5648 5499 3 1365 812 289 124 27 chr1 102243930 102244229 -94951203 - MTE2a LTR MaLR -12 367 40 3 1365 1900 131 30 52 chr1 102244839 102245169 -94950263 - ORR1A2 LTR MaLR 0 327 5 3 1365 226 337 108 0 chr1 102246651 102246734 -94948698 + MIR SINE MIR 21 112 -96 3 1365 22 70 0 0 chr1 102246757 102246800 -94948632 + AT_rich Low_complexity Low_complexity 1 43 0 3 1365 416 344 73 26 chr1 102247302 102247493 -94947939 - B4A SINE B4 -12 280 81 3 1365 8357 24 0 0 chr1 102247532 102249180 -94946252 - L1Md_A LINE L1 -1 6581 4933 3 1365 233 219 44 59 chr1 102249180 102249248 -94946184 + RMER20A LTR ERVK 186 252 -264 3 1365 213 211 0 0 chr1 102249913 102249965 -94945467 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 3 1365 674 311 53 81 chr1 102249970 102250253 -94945179 + ORR1E LTR MaLR 83 357 -2 3 1365 2163 79 0 3 chr1 102250366 102250657 -94944775 + L1_Mus1 LINE L1 6278 6567 0 3 1365 601 329 9 0 chr1 102250742 102250961 -94944471 + ID_B1 SINE B4 2 222 -2 3 1365 909 291 63 23 chr1 102251135 102251565 -94943867 + Lx9 LINE L1 7036 7482 -162 4 1365 22 35 0 0 chr1 102251635 102251664 -94943768 + AT_rich Low_complexity Low_complexity 1 29 0 4 1365 352 262 0 0 chr1 102252071 102252151 -94943281 + B4 SINE B4 7 86 -206 4 1365 768 83 9 0 chr1 102252354 102252462 -94942970 + B1_Mus1 SINE Alu 2 110 -38 4 1365 650 325 9 23 chr1 102252806 102253020 -94942412 - ID_B1 SINE B4 -8 216 6 4 1365 315 0 0 0 chr1 102253634 102253669 -94941763 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1365 243 0 0 0 chr1 102253750 102253777 -94941655 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1365 2768 36 6 0 chr1 102254052 102254382 -94941050 - IAPEY3_LTR LTR ERVK 0 332 1 4 1365 423 0 0 0 chr1 102255117 102255164 -94940268 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1365 1241 92 11 11 chr1 102255482 102255669 -94939763 - B2_Mm2 SINE B2 -7 188 2 4 1365 221 287 40 69 chr1 102255727 102255828 -94939604 - MIRc SINE MIR -149 119 22 4 1365 558 291 16 1 chr1 102255919 102256061 -94939371 - MTE2b LTR MaLR -147 232 90 4 1365 4275 125 51 22 chr1 102256179 102256965 -94938467 - RMER17D2 LTR ERVK 0 809 1 4 1365 567 0 0 0 chr1 102256965 102257028 -94938404 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1365 405 348 54 12 chr1 102257208 102257374 -94938058 - B4 SINE B4 -42 250 78 4 1365 24 0 0 0 chr1 102257484 102257508 -94937924 + AT_rich Low_complexity Low_complexity 1 24 0 4 1365 626 143 0 8 chr1 102258512 102258632 -94936800 + CT-rich Low_complexity Low_complexity 1 119 0 4 1365 495 328 126 26 chr1 102258653 102258844 -94936588 - B4A SINE B4 -81 211 2 4 1365 180 167 0 0 chr1 102259227 102259275 -94936157 + CT-rich Low_complexity Low_complexity 3 50 0 4 1365 1303 167 24 0 chr1 102259275 102259527 -94935905 - Lx2 LINE L1 -7 6990 6733 4 1365 423 38 0 0 chr1 102259530 102259583 -94935849 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1365 1539 140 3 62 chr1 102259583 102259888 -94935544 - L1_Mus4 LINE L1 -12 6624 6338 4 1365 832 124 0 0 chr1 102259888 102260017 -94935415 + L1_Mus4 LINE L1 6200 6328 -310 4 1365 1124 176 5 23 chr1 102260013 102260228 -94935204 - Lx2 LINE L1 -262 6735 6525 4 1365 206 211 35 0 chr1 102260236 102260293 -94935139 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 1365 285 51 0 0 chr1 102260295 102260334 -94935098 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1365 233 173 39 0 chr1 102260726 102260778 -94934654 + GA-rich Low_complexity Low_complexity 3 56 0 4 1365 6462 68 0 24 chr1 102260954 102261814 -94933618 - L1Md_F2 LINE L1 -15 6567 5729 4 1365 463 266 26 34 chr1 102262011 102262128 -94933304 + B4 SINE B4 1 116 -176 4 1365 604 125 0 0 chr1 102262149 102262245 -94933187 - L1_Mus2 LINE L1 -2 6564 6469 4 1365 226 224 17 0 chr1 102262381 102262439 -94932993 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1365 432 294 144 0 chr1 102263343 102263503 -94931929 + MTE2b LTR MaLR 135 317 -62 4 1365 240 35 0 0 chr1 102264156 102264185 -94931247 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1365 23 0 0 0 chr1 102264187 102264210 -94931222 + AT_rich Low_complexity Low_complexity 1 23 0 4 1365 345 333 23 91 chr1 102265074 102265249 -94930183 + MTE2a LTR MaLR 1 163 -216 4 1365 29 78 0 0 chr1 102265343 102265407 -94930025 + AT_rich Low_complexity Low_complexity 1 64 0 4 1365 337 348 89 0 chr1 102267299 102267434 -94927998 + B4A SINE B4 126 272 -20 4 1365 348 24 0 0 chr1 102267453 102267494 -94927938 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1365 312 312 10 20 chr1 102268641 102268739 -94926693 + B4 SINE B4 194 290 -2 4 1365 285 276 0 0 chr1 102269651 102269709 -94925723 + ID4_ SINE ID 5 62 -21 4 1365 441 84 0 0 chr1 102270054 102270125 -94925307 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1365 745 184 6 6 chr1 102270383 102270552 -94924880 + CT-rich Low_complexity Low_complexity 2 170 0 4 1365 650 316 41 21 chr1 102270621 102270815 -94924617 - B4 SINE B4 -87 205 8 4 1365 343 185 22 0 chr1 102270887 102270979 -94924453 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1365 238 0 53 26 chr1 102271555 102271593 -94923839 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1365 3300 240 31 7 chr1 102271759 102272497 -94922935 - Lx5 LINE L1 -85 6965 6210 4 1365 5829 212 53 9 chr1 102272518 102273917 -94921515 - L1_Mur2 LINE L1 -104 5773 4314 4 1365 5773 174 46 10 chr1 102273917 102274083 -94921349 - L1_Mur2 LINE L1 -2202 3675 3507 4 1365 645 25 0 0 chr1 102274083 102274162 -94921270 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1365 5773 174 46 10 chr1 102274162 102275000 -94920432 - L1_Mur2 LINE L1 -2371 3506 2647 4 1365 471 35 0 0 chr1 102275000 102275057 -94920375 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1365 5773 174 46 10 chr1 102275057 102275291 -94920141 - L1_Mur2 LINE L1 -3231 2646 2395 4 1365 22 0 0 0 chr1 102275973 102275995 -94919437 + AT_rich Low_complexity Low_complexity 1 22 0 4 1365 624 253 60 33 chr1 102276273 102276457 -94918975 + MTC LTR MaLR 1 189 -232 4 1365 409 348 9 0 chr1 102276447 102276562 -94918870 - ID_B1 SINE B4 -104 120 5 4 1365 225 297 67 95 chr1 102277204 102277457 -94917975 - Kanga2_a DNA Tc2 -267 621 376 4 1365 1569 141 0 4 chr1 102277933 102278190 -94917242 - L1_Mus4 LINE L1 -5 6631 6376 4 1365 499 296 61 14 chr1 102278192 102278339 -94917093 - B4 SINE B4 -103 189 36 4 1365 1166 177 104 7 chr1 102278339 102278706 -94916726 - RLTR25B LTR ERVK -1 1027 502 4 1365 225 276 0 49 chr1 102278652 102278713 -94916719 - ORR1B1-int LTR MaLR -915 594 537 4 1365 659 279 68 14 chr1 102279155 102279362 -94916070 - ID_B1 SINE B4 -3 221 4 4 1365 1500 64 0 0 chr1 102280683 102280870 -94914562 + B2_Mm1a SINE B2 1 187 -6 4 1365 2397 127 162 0 chr1 102281625 102282083 -94913349 - RLTR47_MM LTR ERV1 0 532 1 4 1365 568 341 11 7 chr1 102282811 102283086 -94912346 - L1M4 LINE L1 -550 5628 5353 4 1365 616 281 30 33 chr1 102283169 102283471 -94911961 - L1M4 LINE L1 -870 5276 4976 4 1365 39 0 0 0 chr1 102283502 102283541 -94911891 + AT_rich Low_complexity Low_complexity 1 39 0 4 1365 655 269 27 0 chr1 102283545 102283694 -94911738 - RSINE1 SINE B4 -3 162 10 4 1365 4868 125 34 2 chr1 102283934 102285333 -94910099 + L1VL1 LINE L1 296 1747 -1951 4 1365 3895 142 120 1 chr1 102285324 102286026 -94909406 + L1_Mus3 LINE L1 5846 6630 -8 4 1365 236 343 100 10 chr1 102286748 102286848 -94908584 + B4A SINE B4 184 292 0 4 1365 180 111 0 0 chr1 102286902 102286929 -94908503 + (TATG)n Simple_repeat Simple_repeat 4 30 0 4 1365 303 28 0 0 chr1 102288549 102288585 -94906847 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1365 408 242 7 13 chr1 102288792 102288947 -94906485 + GA-rich Low_complexity Low_complexity 2 155 0 4 1365 215 319 14 0 chr1 102289538 102289607 -94905825 - PB1D10 SINE Alu -47 70 1 4 1365 1119 297 60 15 chr1 102290628 102290960 -94904472 + Lx5 LINE L1 6696 7042 -8 4 1365 270 278 43 61 chr1 102291395 102291510 -94903922 + ID_B1 SINE B4 111 223 -1 4 1365 378 0 0 0 chr1 102292173 102292215 -94903217 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1365 408 20 0 0 chr1 102292215 102292263 -94903169 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1365 4955 75 51 3 chr1 102292334 102293020 -94902412 - L1Md_F2 LINE L1 -2 6580 5862 4 1365 350 85 17 0 chr1 102293935 102293994 -94901438 + (CAAAA)n Simple_repeat Simple_repeat 3 62 0 4 1365 251 72 58 46 chr1 102295571 102295658 -94899774 + A-rich Low_complexity Low_complexity 2 89 0 4 1365 246 116 0 0 chr1 102296000 102296043 -94899389 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1365 339 323 31 16 chr1 102296144 102296273 -94899159 - RLTR25B LTR ERVK 0 1028 898 4 1365 279 0 0 0 chr1 102296280 102296311 -94899121 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1365 371 211 10 82 chr1 102296358 102296382 -94899050 - RLTR25B LTR ERVK -302 726 703 4 1365 1537 196 2 87 chr1 102296382 102296630 -94898802 - RMER17C LTR ERVK 0 410 183 4 1365 561 68 0 0 chr1 102296630 102296704 -94898728 + (GGA)n Simple_repeat Simple_repeat 3 76 0 4 1365 1537 196 2 87 chr1 102296704 102296903 -94898529 - RMER17C LTR ERVK -228 182 1 4 1365 371 211 10 82 chr1 102296903 102296976 -94898456 - RLTR25B LTR ERVK -326 702 636 4 1365 369 0 0 0 chr1 102297080 102297121 -94898311 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1365 387 60 0 0 chr1 102297173 102297223 -94898209 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1365 1328 242 110 72 chr1 102297787 102298215 -94897217 - RLTR25B LTR ERVK -575 453 10 4 1365 367 261 125 9 chr1 102299263 102299375 -94896057 - RMER5 LTR ERV1 -84 450 326 4 1365 244 368 60 17 chr1 102299395 102299511 -94895921 - RMER5 LTR ERV1 -259 275 155 4 1365 24559 83 129 7 chr1 102299865 102304565 -94890867 + L1Md_F LINE L1 311 5586 -297 4 1365 7643 66 3 6 chr1 102304565 102305562 -94889870 + L1Md_F2 LINE L1 5587 6580 -2 4 1365 240 35 0 0 chr1 102306069 102306098 -94889334 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 4 1365 308 390 76 46 chr1 102306513 102306776 -94888656 + B4A SINE B4 13 283 -9 4 1365 360 0 0 0 chr1 102306777 102306817 -94888615 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1365 638 317 17 0 chr1 102306870 102307050 -94888382 + B3 SINE B2 4 186 -30 4 1365 342 45 0 0 chr1 102307058 102307102 -94888330 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1365 346 309 116 61 chr1 102308147 102308530 -94886902 + RLTR25B LTR ERVK 696 1103 0 4 1365 534 381 23 19 chr1 102308805 102309019 -94886413 - B4 SINE B4 -1 291 77 4 1365 384 282 79 20 chr1 102309475 102309627 -94885805 + B4 SINE B4 43 203 -89 4 1365 559 314 124 68 chr1 102309656 102309994 -94885438 + MTE2a LTR MaLR 14 370 -9 4 1365 2433 49 0 7 chr1 102310483 102310789 -94884643 - L1Md_F2 LINE L1 0 6582 6279 4 1365 1907 44 0 0 chr1 102310789 102311017 -94884415 + L1Md_F2 LINE L1 6037 6264 -320 4 1365 447 374 13 0 chr1 102311698 102311853 -94883579 + B4A SINE B4 2 158 -134 4 1365 258 248 119 41 chr1 102311913 102312291 -94883141 + L1MA4A LINE L1 5853 6249 -51 4 1365 22 0 0 0 chr1 102312303 102312325 -94883107 + AT_rich Low_complexity Low_complexity 1 22 0 4 1365 262 299 112 63 chr1 102312490 102312633 -94882799 + ID_B1 SINE B4 74 223 -1 4 1365 598 320 9 75 chr1 102312922 102313135 -94882297 + ID_B1 SINE B4 17 215 -9 4 1365 506 335 83 52 chr1 102313781 102314033 -94881399 - B4 SINE B4 -18 274 15 5 1365 251 350 39 79 chr1 102314183 102314310 -94881122 + B4 SINE B4 34 155 -137 5 1365 483 60 0 0 chr1 102314352 102314419 -94881013 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1365 1134 297 82 17 chr1 102314805 102315161 -94880271 - MTEa LTR MaLR 0 379 1 5 1365 737 209 162 0 chr1 102315416 102315607 -94879825 + URR1A DNA MER1_type 1 222 -4 5 1365 347 75 24 36 chr1 102316669 102316752 -94878680 + (CAAAAA)n Simple_repeat Simple_repeat 3 84 0 5 1365 540 45 0 0 chr1 102318056 102318123 -94877309 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1365 408 99 0 0 chr1 102318123 102318194 -94877238 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1365 1907 182 69 23 chr1 102318280 102318673 -94876759 + MTC LTR MaLR 3 413 -8 5 1365 225 262 0 0 chr1 102318674 102318716 -94876716 + MTC-int LTR MaLR 10 51 -1741 5 1365 298 250 0 0 chr1 102318725 102318789 -94876643 - MTC LTR MaLR -355 66 3 5 1365 3514 266 64 54 chr1 102318789 102319140 -94876292 + MTC-int LTR MaLR 56 396 -862 5 1365 270 0 0 0 chr1 102319140 102319170 -94876262 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1365 3514 257 64 57 chr1 102319170 102320038 -94875394 + MTC-int LTR MaLR 397 1258 0 5 1365 2037 214 25 7 chr1 102320047 102320452 -94874980 + MTC LTR MaLR 10 421 0 5 1365 539 179 7 0 chr1 102320805 102320945 -94874487 + CT-rich Low_complexity Low_complexity 4 144 0 5 1365 288 0 0 0 chr1 102321248 102321280 -94874152 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1365 315 355 151 11 chr1 102321343 102321528 -94873904 - B4A SINE B4 -74 218 8 5 1365 603 292 51 55 chr1 102321658 102321951 -94873481 - B4A SINE B4 0 292 1 5 1365 326 141 46 15 chr1 102322749 102322814 -94872618 - MTD LTR MaLR 0 379 313 5 1365 471 18 0 0 chr1 102322848 102322904 -94872528 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1365 270 0 0 0 chr1 102322904 102322933 -94872499 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1365 564 335 31 29 chr1 102322933 102323108 -94872324 - MTD LTR MaLR -233 186 18 5 1365 266 298 147 0 chr1 102323729 102323920 -94871512 - L1M3 LINE L1 -698 5473 5255 5 1365 356 373 63 56 chr1 102324623 102324907 -94870525 + B4A SINE B4 7 292 0 5 1365 483 18 0 0 chr1 102324917 102324973 -94870459 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1365 539 360 51 33 chr1 102325102 102325375 -94870057 + B4A SINE B4 5 282 -10 5 1365 184 313 28 56 chr1 102325542 102325613 -94869819 - L2c LINE L2 -219 3168 3100 5 1365 363 78 0 0 chr1 102326203 102326254 -94869178 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1365 237 65 0 0 chr1 102326286 102326317 -94869115 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 5 1365 450 0 0 0 chr1 102326340 102326390 -94869042 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1365 277 394 29 0 chr1 102327915 102328019 -94867413 - PB1D10 SINE Alu -6 111 5 5 1365 192 97 0 0 chr1 102328059 102328090 -94867342 + (CAA)n Simple_repeat Simple_repeat 2 32 0 5 1365 215 376 29 10 chr1 102328511 102328613 -94866819 + MER5A DNA MER1_type 18 121 -68 5 1365 201 341 158 24 chr1 102329046 102329425 -94866007 + L2a LINE L2 1385 1814 -1605 5 1365 911 279 125 3 chr1 102329560 102329848 -94865584 - MTEa LTR MaLR -24 355 33 5 1365 6776 64 1 1 chr1 102329857 102330730 -94864702 + L1Md_F2 LINE L1 4713 5585 -298 5 1365 7842 56 4 5 chr1 102330731 102331726 -94863706 + L1Md_F2 LINE L1 5587 6580 -2 5 1365 23 0 0 0 chr1 102332276 102332299 -94863133 + AT_rich Low_complexity Low_complexity 1 23 0 5 1365 691 324 28 50 chr1 102332485 102332822 -94862610 - RMER15 LTR ERVL -85 490 29 5 1365 193 350 175 0 chr1 102333461 102333604 -94861828 + L2a LINE L2 2202 2369 -1050 5 1365 183 357 45 19 chr1 102333630 102333787 -94861645 + L2a LINE L2 3184 3344 -82 5 1365 861 280 52 97 chr1 102333920 102334303 -94861129 - MTE2a LTR MaLR -5 374 9 5 1365 18503 143 69 11 chr1 102334586 102340610 -94854822 + Lx3_Mus LINE L1 3 7001 -8 5 1365 549 325 78 22 chr1 102340801 102341072 -94854360 - B4 SINE B4 -6 286 1 5 1365 539 173 0 9 chr1 102342027 102342138 -94853294 + (TG)n Simple_repeat Simple_repeat 2 111 0 5 1365 606 363 35 31 chr1 102342307 102342597 -94852835 + B4 SINE B4 2 292 0 5 1365 417 39 0 0 chr1 102343271 102343322 -94852110 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1365 575 71 12 0 chr1 102343936 102344021 -94851411 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1365 376 296 0 25 chr1 102344030 102344148 -94851284 + GA-rich Low_complexity Low_complexity 1 115 0 5 1365 288 0 0 0 chr1 102344814 102344846 -94850586 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1365 624 122 0 0 chr1 102344846 102344969 -94850463 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 1365 887 122 0 10 chr1 102344972 102345127 -94850305 - L1_Mus2 LINE L1 -435 6147 5994 5 1365 288 0 0 0 chr1 102345539 102345571 -94849861 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1365 395 127 28 0 chr1 102346663 102346734 -94848698 + CT-rich Low_complexity Low_complexity 5 77 0 5 1365 1191 29 35 0 chr1 102346734 102346906 -94848526 + (TC)n Simple_repeat Simple_repeat 2 179 0 5 1365 217 361 76 83 chr1 102346973 102347130 -94848302 - B4A SINE B4 -104 188 33 5 1365 1036 226 22 74 chr1 102347145 102347456 -94847976 - MTC-int LTR MaLR -961 297 3 5 1365 1640 251 25 29 chr1 102347559 102347981 -94847451 - MTC LTR MaLR -2 419 1 5 1365 470 346 19 12 chr1 102349089 102349250 -94846182 + B3A SINE B2 37 198 0 5 1365 274 266 27 27 chr1 102349411 102349523 -94845909 + GA-rich Low_complexity Low_complexity 3 114 0 5 1365 218 341 30 61 chr1 102349525 102349656 -94845776 - MIR SINE MIR -135 127 1 5 1365 4683 41 2 0 chr1 102349782 102350348 -94845084 - L1Md_F2 LINE L1 -3 6579 6013 5 1365 201 175 0 0 chr1 102350384 102350424 -94845008 + GA-rich Low_complexity Low_complexity 2 41 0 5 1365 588 40 0 0 chr1 102350948 102351023 -94844409 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1365 312 188 21 48 chr1 102351473 102351618 -94843814 + (TATG)n Simple_repeat Simple_repeat 4 144 0 5 1365 1285 271 53 12 chr1 102351868 102352189 -94843243 + MTE2b LTR MaLR 1 334 -45 5 1365 1068 319 45 6 chr1 102352721 102353058 -94842374 - MTEa LTR MaLR -8 371 22 5 1365 822 350 55 40 chr1 102353387 102353735 -94841697 - ORR1E LTR MaLR -6 353 1 5 1365 246 128 0 0 chr1 102354606 102354645 -94840787 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 5 1365 244 345 0 0 chr1 102354646 102354759 -94840673 + (TATATG)n Simple_repeat Simple_repeat 6 118 0 5 1365 11921 115 26 32 chr1 102355642 102356064 -94839368 - L1VL4 LINE L1 -268 3291 2923 5 1365 1074 101 0 0 chr1 102356064 102356212 -94839220 - B1_Mus1 SINE Alu 0 148 1 5 1365 11921 115 26 32 chr1 102356212 102357870 -94837562 - L1VL4 LINE L1 -637 2922 1223 5 1365 10962 164 61 15 chr1 102357855 102358747 -94836685 - L1VL4 LINE L1 -316 3243 2287 5 1365 225 0 0 0 chr1 102358747 102358772 -94836660 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1365 10962 193 46 24 chr1 102358772 102360988 -94834444 - L1VL4 LINE L1 -1273 2286 46 5 1365 539 310 92 9 chr1 102361167 102361385 -94834047 - B4A SINE B4 0 292 57 5 1365 1310 239 83 18 chr1 102362106 102362502 -94832930 - Lx9 LINE L1 -22 7622 7201 5 1365 428 87 0 28 chr1 102362831 102362902 -94832530 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 1365 324 143 0 0 chr1 102362905 102362961 -94832471 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1365 812 289 125 46 chr1 102363874 102364241 -94831191 + MTD LTR MaLR 19 414 -5 5 1365 254 390 7 14 chr1 102364324 102364462 -94830970 - RMER15 LTR ERVL -164 411 275 5 1365 831 67 0 0 chr1 102364627 102364747 -94830685 - L1Md_F2 LINE L1 0 6582 6463 5 1365 23 0 0 0 chr1 102364797 102364820 -94830612 + AT_rich Low_complexity Low_complexity 1 23 0 5 1365 390 371 30 30 chr1 102365338 102365541 -94829891 - B4A SINE B4 -38 254 52 5 1365 346 241 79 101 chr1 102366064 102366216 -94829216 + B2_Mm2 SINE B2 1 158 -37 5 1365 228 67 0 0 chr1 102366216 102366246 -94829186 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1365 346 241 79 101 chr1 102366246 102366282 -94829150 + B2_Mm2 SINE B2 159 185 -10 5 1365 262 368 44 0 chr1 102366692 102366806 -94828626 + PB1D9 SINE Alu 1 119 -1 5 170 352 407 20 82 chr1 102366931 102367236 -94828196 - B4A SINE B4 -1 291 6 5 1366 302 45 23 0 chr1 102367385 102367429 -94828003 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 1366 12809 60 1 1 chr1 102367656 102369299 -94826133 - L1Md_F2 LINE L1 -294 5589 3947 5 1366 7548 65 6 5 chr1 102369301 102370291 -94825141 + L1Md_F2 LINE L1 5590 6580 -2 5 1366 194 81 0 26 chr1 102370337 102370375 -94825057 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5 1366 23 54 0 0 chr1 102370892 102370929 -94824503 + AT_rich Low_complexity Low_complexity 1 37 0 5 1366 351 0 0 0 chr1 102371149 102371188 -94824244 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1366 7568 78 4 2 chr1 102371800 102373002 -94822430 - L1_Mus1 LINE L1 0 6567 5362 5 1366 208 0 62 0 chr1 102373499 102373531 -94821901 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1366 306 203 119 0 chr1 102373597 102373656 -94821776 + B3A SINE B2 8 73 -125 5 1366 270 0 0 0 chr1 102373729 102373759 -94821673 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1366 186 191 0 0 chr1 102373760 102373802 -94821630 + GA-rich Low_complexity Low_complexity 2 43 0 5 1366 225 65 0 0 chr1 102373831 102373862 -94821570 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1366 290 223 88 11 chr1 102375237 102375354 -94820078 - L1MB5 LINE L1 -396 5904 5781 5 1366 218 146 42 0 chr1 102375354 102375402 -94820030 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1366 343 372 64 49 chr1 102375455 102375783 -94819649 - MER74B LTR ERVL -146 476 144 5 1366 1292 297 92 15 chr1 102375803 102376271 -94819161 - RMER15 LTR ERVL -19 556 53 5 1366 207 250 37 12 chr1 102376728 102376809 -94818623 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 5 1366 275 306 16 28 chr1 102377559 102377738 -94817694 + CT-rich Low_complexity Low_complexity 1 176 0 5 1366 261 254 104 0 chr1 102377752 102377819 -94817613 + ID_B1 SINE B4 149 222 -2 5 1366 235 321 24 47 chr1 102380388 102380473 -94814959 + RSINE1 SINE B4 83 165 0 5 1366 329 155 0 27 chr1 102380476 102380549 -94814883 + (CATA)n Simple_repeat Simple_repeat 2 72 0 5 1366 231 215 0 0 chr1 102380583 102380648 -94814784 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 5 1366 247 91 0 52 chr1 102380734 102380792 -94814640 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1366 370 250 16 111 chr1 102382663 102382789 -94812643 + MT2B LTR ERVL 151 264 -337 6 1366 1028 74 0 0 chr1 102382689 102382824 -94812608 + B1_Mm SINE Alu 13 147 0 6 1366 386 96 14 0 chr1 102382825 102382898 -94812534 + (CAAAAA)n Simple_repeat Simple_repeat 3 76 0 6 1366 324 302 10 10 chr1 102384676 102384773 -94810659 - B1_Mur1 SINE Alu -7 142 46 6 1366 437 183 12 12 chr1 102385790 102385873 -94809559 + HAL1-3A_ME LINE L1 1967 2049 -809 6 1366 674 24 0 12 chr1 102386367 102386452 -94808980 + (TAAA)n Simple_repeat Simple_repeat 2 85 0 6 1366 504 280 93 24 chr1 102387662 102387867 -94807565 + ID_B1 SINE B4 1 219 -5 6 1366 293 0 0 26 chr1 102388172 102388210 -94807222 + (TTA)n Simple_repeat Simple_repeat 2 38 0 6 1366 476 240 40 0 chr1 102388348 102388448 -94806984 - B1_Mur4 SINE Alu -45 105 2 6 1366 290 300 23 98 chr1 102388448 102388502 -94806930 - MT2B LTR ERVL -442 159 116 6 1366 257 331 46 0 chr1 102389063 102389193 -94806239 + L1MB3 LINE L1 5940 6075 -108 6 1366 214 111 36 36 chr1 102389375 102389431 -94806001 + A-rich Low_complexity Low_complexity 2 57 0 6 1366 204 269 0 0 chr1 102389643 102389695 -94805737 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1366 3113 76 2 0 chr1 102389925 102390318 -94805114 - MTA_Mm LTR MaLR 0 396 3 6 1366 3272 114 10 6 chr1 102390658 102391151 -94804281 - RLTR1C LTR ERV1 -8 495 1 6 1366 351 309 60 24 chr1 102391271 102391437 -94803995 + RLTR42-int LTR ERVK 1228 1399 -4123 6 1366 393 22 0 0 chr1 102391457 102391503 -94803929 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 6 1366 432 0 0 0 chr1 102391641 102391689 -94803743 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1366 3250 152 6 18 chr1 102391692 102392242 -94803190 - Lx2 LINE L1 -1 6996 6454 6 1366 355 143 79 0 chr1 102392386 102392449 -94802983 + RLTR25A LTR ERVK 1036 1103 0 6 1366 1472 345 41 50 chr1 102394434 102395756 -94799676 + RodERV21-int LTR ERV1 2806 4115 -876 6 1366 465 19 0 0 chr1 102397337 102397391 -94798041 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 6 1366 262 358 16 34 chr1 102397792 102398234 -94797198 - RodERV21-int LTR ERV1 -3017 4074 3641 6 1366 4389 298 26 30 chr1 102398403 102399875 -94795557 - RodERV21-int LTR ERV1 -2273 2718 1252 6 1366 270 116 0 0 chr1 102401095 102401138 -94794294 + (TGG)n Simple_repeat Simple_repeat 1 43 0 6 1366 4768 117 2 79 chr1 102402030 102402902 -94792530 - RMER17D2 LTR ERVK 0 809 5 6 1366 607 329 66 73 chr1 102403013 102403533 -94791899 - Lx6 LINE L1 -16 7444 6531 6 1366 1086 211 82 14 chr1 102403533 102403812 -94791620 - RMER17C LTR ERVK 0 410 113 6 1366 235 314 17 136 chr1 102403940 102404058 -94791374 - B4 SINE B4 -83 209 106 6 1366 350 269 141 27 chr1 102404035 102404184 -94791248 - ORR1D1 LTR MaLR -13 361 196 6 1366 326 242 15 0 chr1 102404267 102404333 -94791099 - RMER13A LTR ERVK -377 483 417 6 1366 976 270 121 22 chr1 102404322 102404644 -94790788 - ORR1D2 LTR MaLR -16 354 1 6 1366 272 27 27 0 chr1 102405287 102405324 -94790108 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1366 24 67 0 0 chr1 102405427 102405472 -94789960 + AT_rich Low_complexity Low_complexity 1 45 0 6 1366 484 340 124 29 chr1 102405568 102405810 -94789622 - B4A SINE B4 -22 270 6 6 1366 21 0 0 0 chr1 102406161 102406182 -94789250 + AT_rich Low_complexity Low_complexity 1 21 0 6 1366 1569 219 92 93 chr1 102406248 102406849 -94788583 + RMER17B LTR ERVK 99 677 -229 6 1366 283 259 62 0 chr1 102407171 102407252 -94788180 + Lx7 LINE L1 6866 6951 -745 6 1366 280 264 14 0 chr1 102407252 102407324 -94788108 + MT2B LTR ERVL 193 265 -336 6 1366 5547 201 69 9 chr1 102407321 102408497 -94786935 + ORR1A3-int LTR MaLR 718 1963 0 6 1366 1572 167 25 75 chr1 102408502 102408658 -94786774 + ORR1A3 LTR MaLR 17 164 -162 6 1366 1363 119 27 5 chr1 102408658 102408877 -94786555 - L1_Mus3 LINE L1 -5 6633 6410 6 1366 1572 167 25 75 chr1 102408877 102409038 -94786394 + ORR1A3 LTR MaLR 165 318 -8 6 1366 771 358 42 4 chr1 102409045 102409309 -94786123 - MTEb LTR MaLR -84 295 22 6 1366 1383 202 112 35 chr1 102409784 102410122 -94785310 - ORR1D1 LTR MaLR -2 372 9 6 1366 287 113 16 0 chr1 102410136 102410198 -94785234 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 6 1366 7555 59 1 7 chr1 102410239 102411241 -94784191 - L1Md_F2 LINE L1 0 6582 5587 6 1366 574 365 59 0 chr1 102411267 102411470 -94783962 - ID_B1 SINE B4 -3 221 7 6 1366 277 272 106 24 chr1 102412322 102412439 -94782993 - B4 SINE B4 0 292 172 6 1366 215 259 93 0 chr1 102412505 102412559 -94782873 - B4 SINE B4 -231 61 3 6 1366 328 244 16 0 chr1 102413181 102413308 -94782124 + (TA)n Simple_repeat Simple_repeat 1 129 0 6 1366 1837 166 56 9 chr1 102413308 102413648 -94781784 - ORR1B1 LTR MaLR 0 394 39 6 1366 289 360 0 0 chr1 102413787 102413934 -94781498 + (TATG)n Simple_repeat Simple_repeat 1 147 0 6 1366 291 255 0 0 chr1 102413942 102414048 -94781384 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 1366 258 95 0 0 chr1 102414058 102414100 -94781332 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1366 1020 202 60 13 chr1 102414170 102414459 -94780973 + ORR1B1 LTR MaLR 3 394 0 6 1366 378 339 16 24 chr1 102415267 102415391 -94780041 + RSINE1 SINE B4 32 154 -11 6 1366 570 311 7 7 chr1 102415435 102415587 -94779845 + B4 SINE B4 4 155 -137 6 1366 1319 221 19 45 chr1 102416728 102417102 -94778330 + Lx2B LINE L1 5881 6244 -756 6 1366 2244 222 107 6 chr1 102417198 102417720 -94777712 + RMER15 LTR ERVL 1 575 0 6 1366 239 320 139 10 chr1 102417811 102417912 -94777520 + MTE-int LTR MaLR 28 141 -1439 6 1366 630 111 139 0 chr1 102417899 102418007 -94777425 - RMER19C LTR ERVK -488 123 1 6 1366 233 303 124 35 chr1 102418693 102418806 -94776626 + MTEb LTR MaLR 255 377 -2 6 1366 471 35 0 0 chr1 102419097 102419154 -94776278 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1366 205 86 0 28 chr1 102420708 102420744 -94774688 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1366 950 99 35 0 chr1 102420744 102420886 -94774546 - B1_Mm SINE Alu 0 147 1 6 1366 30 45 0 0 chr1 102421061 102421105 -94774327 + AT_rich Low_complexity Low_complexity 1 44 0 6 1366 367 158 13 0 chr1 102421110 102421186 -94774246 - L1_Mus2 LINE L1 0 6566 6490 6 1366 5789 73 19 1 chr1 102421186 102421990 -94773442 + L1_Mus2 LINE L1 5644 6461 -105 6 1366 249 274 134 21 chr1 102421990 102422087 -94773345 + RMER15 LTR ERVL 467 574 -1 6 1366 282 304 133 54 chr1 102422273 102422513 -94772919 - Lx8 LINE L1 -22 7451 7193 6 1366 726 98 0 10 chr1 102423906 102424009 -94771423 - B1_Mus1 SINE Alu -43 105 4 6 1366 207 146 0 0 chr1 102424200 102424241 -94771191 + (ATG)n Simple_repeat Simple_repeat 2 42 0 6 1366 1026 264 34 21 chr1 102425168 102425493 -94769939 - ORR1A4 LTR MaLR 0 329 1 6 1366 2286 110 78 10 chr1 102425533 102425918 -94769514 + IAPLTR2a LTR ERVK 1 411 0 6 1366 6519 38 4 11 chr1 102425920 102426753 -94768679 - IAPEz-int LTR ERVK -2 6479 5653 6 1366 2502 73 0 6 chr1 102426748 102427092 -94768340 - IAPEz-int LTR ERVK -4781 1700 1359 6 1366 3325 55 19 16 chr1 102427092 102427660 -94767772 - IAPEz-int LTR ERVK -5819 662 168 6 1366 237 321 0 0 chr1 102427660 102427713 -94767719 - RLTR27 LTR ERVK -34 275 223 6 1366 784 131 22 177 chr1 102427713 102427941 -94767491 - IAPEz-int LTR ERVK -6286 195 3 6 1366 2597 73 68 33 chr1 102427943 102428340 -94767092 - IAPLTR2a LTR ERVK 0 411 1 6 1366 349 325 238 0 chr1 102428350 102428583 -94766849 + MLT1A0 LTR MaLR 12 299 -66 6 1366 612 40 0 0 chr1 102428583 102428658 -94766774 + (TTC)n Simple_repeat Simple_repeat 2 76 0 6 1366 349 325 238 0 chr1 102428658 102428710 -94766722 + MLT1A0 LTR MaLR 300 364 -1 6 1366 1120 245 85 4 chr1 102429200 102429470 -94765962 - ORR1C2 LTR MaLR -92 292 1 6 1366 634 233 34 28 chr1 102431200 102431217 -94764215 + ORR1B1-int LTR MaLR 1395 1412 -380 6 1366 1583 226 57 3 chr1 102431217 102431589 -94763843 + ORR1B1 LTR MaLR 1 392 -2 6 1366 756 174 33 0 chr1 102431589 102431748 -94763684 + ORR1B1-int LTR MaLR 1601 1744 -219 6 1366 2726 229 58 8 chr1 102431738 102432371 -94763061 + ORR1B1-int LTR MaLR 845 1509 0 6 1366 1368 250 41 36 chr1 102432371 102432736 -94762696 + ORR1B1 LTR MaLR 2 368 -26 6 1366 281 381 45 0 chr1 102433073 102433207 -94762225 - B4 SINE B4 -97 195 56 6 1366 276 53 0 0 chr1 102433435 102433473 -94761959 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1366 1402 242 46 21 chr1 102434427 102435162 -94760270 + L1_Mur2 LINE L1 895 1592 -4285 6 1366 325 149 37 0 chr1 102435167 102435274 -94760158 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 6 1366 423 221 8 8 chr1 102435278 102435410 -94760022 + L1_Mur2 LINE L1 1595 1726 -4154 6 1366 4136 223 35 7 chr1 102435403 102436525 -94758907 + L1_Mur2 LINE L1 4145 5297 -583 6 1366 390 192 0 0 chr1 102436533 102436606 -94758826 + L1_Mur2 LINE L1 525 597 -6489 6 1366 5107 158 16 19 chr1 102436614 102437340 -94758092 + L1_Mur2 LINE L1 2890 3621 -2256 6 1366 1009 103 0 27 chr1 102437340 102437489 -94757943 - B1_Mus1 SINE Alu -2 146 2 6 1366 5107 158 16 19 chr1 102437489 102437820 -94757612 + L1_Mur2 LINE L1 3622 3944 -1933 6 1366 609 222 186 33 chr1 102437835 102438045 -94757387 + L1_Mur2 LINE L1 5621 5862 -15 6 1366 773 302 96 42 chr1 102438125 102438718 -94756714 + Lx6 LINE L1 6478 7414 -46 6 1366 845 159 94 6 chr1 102438765 102438936 -94756496 + B2_Mm2 SINE B2 1 186 -9 6 1366 25 0 0 0 chr1 102439240 102439265 -94756167 + AT_rich Low_complexity Low_complexity 1 25 0 6 1366 243 292 27 40 chr1 102439290 102439365 -94756067 - RSINE1 SINE B4 -10 155 82 6 1366 1074 228 41 89 chr1 102439499 102439885 -94755547 + RMER2 LTR ERV1 1 445 -122 6 1366 483 353 68 23 chr1 102440338 102440869 -94754563 + MuLV-int LTR ERV1 882 1436 -3627 6 1366 516 167 32 0 chr1 102440898 102441024 -94754408 + RMER3D-int LTR ERVK 1101 1230 -1096 6 1366 719 176 34 48 chr1 102441026 102441235 -94754197 + RMER3D-int LTR ERVK 1902 2107 -735 6 1366 758 179 21 0 chr1 102441236 102441426 -94754006 + L1_Mur3 LINE L1 3113 3306 -2574 6 1366 739 244 22 5 chr1 102441428 102441613 -94753819 + Lx6 LINE L1 7267 7454 -6 6 1366 2466 215 37 41 chr1 102441629 102441658 -94753774 + RMER3D-int LTR ERVK 2109 2137 -705 6 1366 3082 17 0 0 chr1 102441658 102442004 -94753428 - ORR1A0 LTR MaLR 0 346 1 6 1366 2466 215 37 41 chr1 102442004 102442710 -94752722 + RMER3D-int LTR ERVK 2138 2841 -1 6 1366 2227 241 81 12 chr1 102442711 102443278 -94752154 + RLTR17 LTR ERVK 4 609 -83 6 1366 1906 347 50 44 chr1 102443674 102445512 -94749920 + MuLV-int LTR ERV1 2573 4421 -3135 6 1366 870 310 53 15 chr1 102445797 102446247 -94749185 + MuLV-int LTR ERV1 4716 5391 -2387 6 1366 329 284 0 0 chr1 102446416 102446497 -94748935 + RLTR4_MM-int LTR ERV1 5498 5578 -2023 6 1366 3062 74 5 2 chr1 102447282 102447677 -94747755 - MTA_Mm LTR MaLR 0 396 1 6 1366 473 332 125 14 chr1 102448292 102448717 -94746715 + RLTR4_MM-int LTR ERV1 7013 7484 -117 6 1366 1590 238 140 32 chr1 102448843 102449343 -94746089 + RMER2 LTR ERV1 13 566 -1 6 1366 268 333 0 20 chr1 102449344 102449445 -94745987 - B4 SINE B4 -192 100 2 6 1366 432 0 0 0 chr1 102449546 102449594 -94745838 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1366 2784 25 6 9 chr1 102449724 102450052 -94745380 + IAPLTR2b LTR ERVK 1 327 0 6 1366 182 280 51 51 chr1 102450528 102450607 -94744825 - L2 LINE L2 -2501 918 840 6 1366 252 0 0 0 chr1 102451086 102451114 -94744318 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 7 1366 847 73 16 0 chr1 102451114 102451238 -94744194 + (TTC)n Simple_repeat Simple_repeat 3 128 0 7 1366 498 46 0 0 chr1 102451238 102451303 -94744129 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1366 311 44 22 0 chr1 102451303 102451348 -94744084 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1366 340 372 35 52 chr1 102451474 102451647 -94743785 - B4 SINE B4 -118 174 5 7 1366 1369 186 170 109 chr1 102452611 102453016 -94742416 - RLTR23 LTR ERV1 0 430 1 7 1366 260 83 0 20 chr1 102453066 102453115 -94742317 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 7 1366 218 171 42 28 chr1 102453436 102453508 -94741924 + A-rich Low_complexity Low_complexity 2 74 0 7 1366 259 294 71 35 chr1 102453508 102453621 -94741811 + B4 SINE B4 100 216 -76 7 1366 1124 285 36 3 chr1 102453645 102453948 -94741484 - RMER13B LTR ERVK 0 908 596 7 1366 1024 295 80 30 chr1 102453957 102454384 -94741048 - Lx6 LINE L1 -987 6473 6026 7 1366 216 135 0 0 chr1 102454430 102454467 -94740965 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 7 1366 913 163 0 11 chr1 102454477 102454657 -94740775 + GA-rich Low_complexity Low_complexity 3 180 0 7 1366 3907 212 21 45 chr1 102455114 102456171 -94739261 - L1_Mur3 LINE L1 -1259 4621 3591 7 1366 36514 29 11 7 chr1 102456171 102461331 -94734101 + L1Md_A LINE L1 406 5586 -297 7 1366 8076 49 1 0 chr1 102461331 102462326 -94733106 + L1Md_A LINE L1 5587 6582 0 7 1366 429 370 51 105 chr1 102462655 102462951 -94732481 + B4A SINE B4 5 284 -8 7 1366 1309 256 24 3 chr1 102462977 102463310 -94732122 + RLTR15 LTR ERVK 17 356 -3 7 1366 645 110 0 0 chr1 102463345 102463454 -94731978 + (CA)n Simple_repeat Simple_repeat 1 109 0 7 1366 281 272 82 4 chr1 102463833 102464006 -94731426 - Lx7 LINE L1 -1876 5820 5630 7 1366 298 67 0 22 chr1 102464270 102464316 -94731116 + IAPLTR2b LTR ERVK 234 278 -49 7 1366 772 264 23 0 chr1 102464972 102465192 -94730240 + URR1B DNA MER1_type 1 225 0 7 1366 762 302 108 60 chr1 102466444 102466779 -94728653 - ORR1E LTR MaLR -6 353 3 7 1366 230 311 129 48 chr1 102466905 102467091 -94728341 - MIR SINE MIR -23 239 39 7 1366 712 326 44 22 chr1 102467953 102468179 -94727253 - B4A SINE B4 -56 236 6 7 1366 460 277 107 30 chr1 102468188 102468525 -94726907 + L1M2 LINE L1 3204 3561 -2579 7 1366 4524 199 40 20 chr1 102468864 102469100 -94726332 + L1_Mur1 LINE L1 1434 1670 -4216 7 1366 180 0 0 0 chr1 102469100 102469120 -94726312 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1366 4524 199 40 20 chr1 102469120 102470012 -94725420 + L1_Mur1 LINE L1 1671 2583 -3303 7 1366 507 287 58 151 chr1 102470035 102470400 -94725032 + L1VL1 LINE L1 32 362 -6060 7 1366 467 249 25 19 chr1 102470460 102470611 -94724821 + L1VL4 LINE L1 549 813 -5806 7 1366 2585 171 9 8 chr1 102470612 102471195 -94724237 + L1VL4 LINE L1 728 1317 -5343 7 1366 5835 144 18 39 chr1 102471199 102473171 -94722261 + L1Md_F LINE L1 237 2065 -3818 7 1366 7072 46 0 4 chr1 102473171 102474136 -94721296 + L1Md_F2 LINE L1 5484 6444 -138 7 1366 291 202 9 57 chr1 102474138 102474243 -94721189 - RMER3D-int LTR ERVK -1638 1204 1105 7 1366 243 0 0 0 chr1 102474993 102475020 -94720412 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1366 444 82 0 0 chr1 102475157 102475218 -94720214 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1366 409 287 13 89 chr1 102475259 102475416 -94720016 - RLTR20D LTR ERVK -15 563 419 7 1366 903 252 72 28 chr1 102475383 102475673 -94719759 - RLTR20D LTR ERVK -265 303 1 7 1366 3873 190 30 5 chr1 102475675 102476509 -94718923 + L1_Mur1 LINE L1 3238 4092 -1794 7 1366 759 42 0 0 chr1 102476543 102476638 -94718794 + (TTTCC)n Simple_repeat Simple_repeat 1 95 0 7 1366 1229 46 11 11 chr1 102476638 102476812 -94718620 + (TTCTC)n Simple_repeat Simple_repeat 4 178 0 7 1366 2367 104 12 0 chr1 102477026 102477361 -94718071 - L1_Mus3 LINE L1 -54 6584 6246 7 1366 430 214 8 51 chr1 102477361 102477479 -94717953 - RLTR11B LTR ERVK -340 113 1 7 1366 364 295 71 20 chr1 102477996 102478193 -94717239 + L1M2 LINE L1 4934 5140 -1003 7 1366 1709 202 88 0 chr1 102478202 102478564 -94716868 - ORR1B1 LTR MaLR 0 394 1 7 1366 24 0 0 0 chr1 102479368 102479392 -94716040 + AT_rich Low_complexity Low_complexity 1 24 0 7 1366 495 0 0 0 chr1 102479439 102479494 -94715938 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1366 535 275 20 40 chr1 102479495 102479643 -94715789 + MTC LTR MaLR 22 166 -255 7 1366 800 79 0 17 chr1 102479647 102479763 -94715669 - RLTR27 LTR ERVK 0 309 196 7 1366 601 308 108 4 chr1 102479757 102480008 -94715424 + MTC LTR MaLR 138 414 -7 7 1366 232 240 79 10 chr1 102480083 102480184 -94715248 - L1MD LINE L1 -1201 4945 4838 7 1366 321 26 0 0 chr1 102480657 102480695 -94714737 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1366 1395 219 3 93 chr1 102480749 102481092 -94714340 - ORR1B1 LTR MaLR -8 386 75 7 1366 296 161 16 0 chr1 102481362 102481424 -94714008 + CT-rich Low_complexity Low_complexity 4 66 0 7 1366 291 130 0 0 chr1 102482226 102482280 -94713152 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1366 250 271 100 8 chr1 102482564 102482694 -94712738 + L1M4 LINE L1 2998 3139 -3007 7 1366 1212 233 118 14 chr1 102482777 102483134 -94712298 - Lx2B LINE L1 -1 6999 6606 7 1366 458 357 45 0 chr1 102483141 102483298 -94712134 + B3A SINE B2 2 165 -33 7 1366 561 76 0 0 chr1 102483301 102483380 -94712052 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1366 361 277 35 81 chr1 102483451 102483596 -94711836 + L1M4 LINE L1 3334 3473 -2673 7 1366 6723 104 15 19 chr1 102483596 102484583 -94710849 + RLTR13C1 LTR ERVK 1 983 0 7 1366 361 277 35 81 chr1 102484583 102484610 -94710822 + L1M4 LINE L1 3474 3497 -2649 7 1366 254 294 132 51 chr1 102484671 102484944 -94710488 + L1M4 LINE L1 3622 3916 -2230 7 1366 21 36 0 0 chr1 102484952 102484980 -94710452 + AT_rich Low_complexity Low_complexity 1 28 0 7 1366 386 340 102 28 chr1 102485247 102485622 -94709810 - Lx7 LINE L1 -477 6996 6585 7 1366 347 298 47 19 chr1 102485936 102486042 -94709390 - B3A SINE B2 -89 109 1 7 1366 513 331 25 6 chr1 102486078 102486239 -94709193 - B3A SINE B2 -15 183 20 7 1366 3038 270 60 12 chr1 102486860 102487847 -94707585 - RMER1A Other Other -3 1027 95 7 1366 202 303 13 0 chr1 102488426 102488502 -94706930 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 7 1366 638 157 8 0 chr1 102488564 102488685 -94706747 + (TA)n Simple_repeat Simple_repeat 1 122 0 7 1366 272 333 97 97 chr1 102488685 102488871 -94706561 - B4 SINE B4 0 292 107 7 1366 249 175 32 0 chr1 102490280 102490343 -94705089 + A-rich Low_complexity Low_complexity 3 67 0 7 1366 868 309 73 23 chr1 102490654 102491008 -94704424 + MTD LTR MaLR 46 417 -2 7 1366 4330 84 2 13 chr1 102491171 102492073 -94703359 - L1_Mus2 LINE L1 -410 6156 5275 7 1366 4262 150 12 78 chr1 102492072 102492919 -94702513 + L1_Mm LINE L1 4413 5203 -680 7 1366 234 301 41 0 chr1 102493013 102493086 -94702346 + RSINE1 SINE B4 64 139 -26 7 1366 596 304 34 0 chr1 102493153 102493357 -94702075 - B3 SINE B2 -5 211 1 7 1366 420 37 0 0 chr1 102494470 102494524 -94700908 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1366 245 305 34 0 chr1 102494559 102494618 -94700814 - B3 SINE B2 -72 144 84 7 1366 23 33 0 0 chr1 102494645 102494675 -94700757 + AT_rich Low_complexity Low_complexity 1 30 0 7 1366 21 0 0 0 chr1 102494840 102494861 -94700571 + AT_rich Low_complexity Low_complexity 1 21 0 7 1366 318 306 28 0 chr1 102494899 102495007 -94700425 + PB1D9 SINE Alu 3 113 -7 7 1366 1414 261 60 88 chr1 102495627 102496139 -94699293 - RLTR19 LTR ERVK -1 498 1 7 1366 23 0 0 0 chr1 102496213 102496236 -94699196 + AT_rich Low_complexity Low_complexity 1 23 0 7 1366 677 319 112 75 chr1 102496427 102496749 -94698683 + MTD LTR MaLR 18 353 -54 7 1366 1446 261 13 66 chr1 102496751 102497018 -94698414 - RMER10A LTR ERVL 0 442 197 7 1366 3411 67 57 9 chr1 102497018 102497471 -94697961 + MT2C_Mm LTR ERVL 1 475 0 7 1366 1446 261 13 66 chr1 102497471 102497670 -94697762 - RMER10A LTR ERVL -246 196 1 7 1366 246 232 71 14 chr1 102498103 102498126 -94697306 - PB1D10 SINE Alu -1 116 43 7 1366 253 191 0 0 chr1 102498126 102498173 -94697259 - ID_B1 SINE B4 -54 170 124 7 1367 891 214 0 46 chr1 102498405 102498601 -94696831 - MTC LTR MaLR -9 412 226 7 1367 2097 200 52 44 chr1 102498601 102499102 -94696330 + RLTR16 LTR ERVK 1 505 0 7 1367 744 213 43 10 chr1 102499102 102499286 -94696146 - MTC LTR MaLR -197 203 1 7 1367 222 273 15 15 chr1 102499724 102499791 -94695641 + B4 SINE B4 2 68 -224 7 1367 824 233 51 15 chr1 102499804 102500000 -94695432 + MTC LTR MaLR 16 218 -203 7 1367 801 249 14 53 chr1 102500001 102500209 -94695223 + MTC LTR MaLR 221 420 -1 1 1367 2856 246 142 40 chr1 102500209 102501350 -94694082 + MTC-int LTR MaLR 2 1258 0 1 1367 244 209 0 0 chr1 102501383 102501426 -94694006 + MTC LTR MaLR 379 421 0 1 1367 231 284 30 0 chr1 102501912 102501979 -94693453 + B4 SINE B4 4 72 -220 2 1367 1046 239 4 13 chr1 102501986 102502223 -94693209 - RLTR40 LTR ERVK -17 800 566 3 1367 1768 263 85 64 chr1 102502195 102502853 -94692579 - RLTR40 LTR ERVK -145 672 1 3 1367 399 311 122 47 chr1 102502905 102503077 -94692355 + B4 SINE B4 103 287 -5 2 1367 260 53 26 0 chr1 102503141 102503179 -94692253 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1367 267 233 16 16 chr1 102503457 102503518 -94691914 + B4 SINE B4 113 173 -119 5 1367 318 217 93 19 chr1 102503522 102503630 -94691802 + L1MA6 LINE L1 6160 6275 -25 6 1367 459 0 0 0 chr1 102504975 102505026 -94690406 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1367 617 281 116 19 chr1 102505592 102505623 -94689809 - RLTR20B3 LTR ERVK -56 521 483 8 1367 327 25 0 0 chr1 102505623 102505663 -94689769 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1367 617 289 96 31 chr1 102505663 102505891 -94689541 - RLTR20B3 LTR ERVK -95 482 220 8 1367 16669 80 0 6 chr1 102505952 102507084 -94688348 - L1Md_F2 LINE L1 0 6582 5453 1 1367 1173 72 0 40 chr1 102507084 102507257 -94688175 - L1Md_F2 LINE L1 -3 6579 6414 1 1367 16669 83 2 40 chr1 102507257 102509292 -94686140 - L1Md_F2 LINE L1 -431 5452 3510 1 1367 949 349 68 21 chr1 102509316 102510537 -94684895 - Lx8 LINE L1 -899 6574 5304 1 1367 319 294 65 46 chr1 102510556 102510709 -94684723 - L1M2 LINE L1 -869 5274 5119 1 1367 782 214 109 38 chr1 102510826 102511064 -94684368 + RMER4B LTR ERVK 1 255 -330 1 1367 555 244 155 69 chr1 102511146 102511446 -94683986 + RMER4B LTR ERVK 317 574 -11 1 1367 417 39 0 0 chr1 102511896 102511947 -94683485 + (CATA)n Simple_repeat Simple_repeat 1 51 0 1 1367 294 406 8 0 chr1 102511948 102512071 -94683361 - ORR1D2 LTR MaLR -76 294 171 1 1367 233 143 61 0 chr1 102512080 102512129 -94683303 - Lx5 LINE L1 -529 6521 6470 1 1367 735 194 155 63 chr1 102512122 102512436 -94682996 - Lx5 LINE L1 -1174 5876 5566 1 1367 420 347 40 40 chr1 102512436 102512634 -94682798 - ORR1D2 LTR MaLR -164 206 9 1 1367 303 28 0 0 chr1 102513212 102513248 -94682184 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1367 381 32 15 31 chr1 102513332 102513397 -94682035 + (TTTA)n Simple_repeat Simple_repeat 4 67 0 1 1367 4951 38 3 2 chr1 102513399 102513987 -94681445 - L1Md_F2 LINE L1 -14 6568 5980 2 1367 2947 154 31 6 chr1 102513988 102514497 -94680935 - Lx3A LINE L1 -9 6972 6451 2 1367 495 63 0 0 chr1 102514502 102514565 -94680867 - L1_Mur1 LINE L1 -465 5421 5359 2 1367 999 131 7 0 chr1 102514585 102514730 -94680702 - B1_Mus2 SINE Alu 0 147 2 2 1367 438 20 0 0 chr1 102514837 102514888 -94680544 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 2 1367 1051 138 0 6 chr1 102514888 102515048 -94680384 - B2_Mm2 SINE B2 -36 159 1 2 1367 426 39 0 0 chr1 102515089 102515141 -94680291 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1367 434 364 36 12 chr1 102515268 102515435 -94679997 - B4A SINE B4 -117 175 5 2 1367 25 51 0 0 chr1 102515569 102515608 -94679824 + AT_rich Low_complexity Low_complexity 1 39 0 2 1367 24 0 0 0 chr1 102516377 102516401 -94679031 + AT_rich Low_complexity Low_complexity 1 24 0 2 1367 324 116 0 0 chr1 102517653 102517696 -94677736 - HAL1-3A_ME LINE L1 -838 2020 1978 3 1367 272 301 15 22 chr1 102517700 102517836 -94677596 + (TG)n Simple_repeat Simple_repeat 1 135 0 3 1367 236 373 35 21 chr1 102517860 102518005 -94677427 - RSINE1 SINE B4 -16 149 3 3 1367 351 0 0 0 chr1 102519577 102519616 -94675816 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1367 591 130 0 0 chr1 102519826 102519926 -94675506 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1367 351 313 55 24 chr1 102519951 102520242 -94675190 - L1_Mur3 LINE L1 -479 5401 5102 3 1367 498 61 0 0 chr1 102520279 102520345 -94675087 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 3 1367 257 262 60 0 chr1 102520385 102520469 -94674963 - L1M2 LINE L1 -1137 5006 4918 3 1367 4371 79 7 10 chr1 102520471 102521072 -94674360 - L1Md_F2 LINE L1 0 6582 5984 3 1367 1945 71 0 0 chr1 102521072 102521326 -94674106 + L1_Mm LINE L1 4938 5191 -692 3 1367 258 307 62 23 chr1 102521441 102521571 -94673861 - L1_Mur3 LINE L1 -1078 4802 4668 3 1367 315 355 40 10 chr1 102521640 102521839 -94673593 - L1M2 LINE L1 -1510 4633 4429 4 1367 270 56 0 0 chr1 102521862 102521898 -94673534 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1367 710 326 60 60 chr1 102521898 102522267 -94673165 + MTE2a LTR MaLR 6 374 -5 4 1367 24 0 0 0 chr1 102522464 102522488 -94672944 + AT_rich Low_complexity Low_complexity 1 24 0 4 1367 405 0 0 0 chr1 102522560 102522605 -94672827 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1367 23 0 0 0 chr1 102524263 102524286 -94671146 + AT_rich Low_complexity Low_complexity 1 23 0 4 1367 264 77 0 0 chr1 102524839 102524878 -94670554 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1367 1211 61 0 0 chr1 102524881 102525029 -94670403 - B1_Mus1 SINE Alu 0 148 1 4 1367 189 0 0 0 chr1 102525233 102525254 -94670178 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1367 703 118 244 0 chr1 102525254 102525373 -94670059 - B1_Mus1 SINE Alu 0 148 1 4 1367 468 62 0 0 chr1 102525751 102525815 -94669617 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 5 1367 388 319 174 0 chr1 102525859 102525997 -94669435 - B4A SINE B4 -130 162 1 5 1367 32 0 0 0 chr1 102526504 102526536 -94668896 + AT_rich Low_complexity Low_complexity 1 32 0 5 1367 643 305 5 87 chr1 102526542 102526617 -94668815 - B3 SINE B2 -13 203 131 5 1367 2700 70 0 3 chr1 102526617 102526973 -94668459 + L1_Mus1 LINE L1 6213 6567 0 5 1367 643 305 5 87 chr1 102526973 102527116 -94668316 - B3 SINE B2 -86 130 3 5 1367 189 0 0 0 chr1 102527141 102527162 -94668270 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 5 1367 283 392 0 16 chr1 102527163 102527285 -94668147 - RSINE1 SINE B4 0 165 46 5 1367 348 259 17 88 chr1 102527898 102528028 -94667404 - B3A SINE B2 0 216 95 5 1367 282 95 0 0 chr1 102528031 102528073 -94667359 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 5 1367 235 205 54 3 chr1 102528076 102528150 -94667282 - B1_Mur1 SINE Alu 0 149 73 5 1367 987 269 11 21 chr1 102528882 102529402 -94666030 - RMER17C LTR ERVK -519 439 85 6 1367 286 175 17 17 chr1 102529402 102529460 -94665972 - MER31B LTR ERV1 -402 64 7 6 1367 3911 191 49 9 chr1 102530319 102531194 -94664238 + Lx2 LINE L1 4527 5436 -441 6 1367 1921 179 6 9 chr1 102531191 102531523 -94663909 - Lx2 LINE L1 -126 5757 5427 6 1367 2745 146 39 44 chr1 102531522 102532040 -94663392 + Lx2 LINE L1 5765 6279 -718 6 1367 430 371 13 71 chr1 102532089 102532327 -94663105 - B4 SINE B4 -63 229 6 6 1367 345 24 0 0 chr1 102532376 102532418 -94663014 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1367 10175 39 17 39 chr1 102532419 102533539 -94661893 + L1Md_A LINE L1 2 1138 -5586 6 1367 761 38 0 0 chr1 102533539 102533644 -94661788 + L1Md_T LINE L1 6478 6582 0 6 1367 37594 12 2 1 chr1 102533644 102538130 -94657302 + L1Md_A LINE L1 1139 5586 -297 6 1367 8689 15 0 2 chr1 102538131 102539126 -94656306 + L1Md_A LINE L1 5588 6580 -2 6 1367 67 34 0 0 chr1 102539199 102539287 -94656145 + AT_rich Low_complexity Low_complexity 1 88 0 6 1367 357 24 0 0 chr1 102539287 102539329 -94656103 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1367 547 261 44 19 chr1 102539330 102539490 -94655942 - B3A SINE B2 -31 167 4 6 1367 456 67 0 0 chr1 102539711 102539771 -94655661 + (T)n Simple_repeat Simple_repeat 1 60 0 7 1367 257 180 0 20 chr1 102540058 102540109 -94655323 - MTEa LTR MaLR -9 370 321 7 1367 430 230 10 10 chr1 102541177 102541278 -94654154 + BC1_Mm scRNA scRNA 2 102 -50 7 1367 867 90 0 0 chr1 102541278 102541400 -94654032 + (CATATA)n Simple_repeat Simple_repeat 2 123 0 7 1367 1337 247 39 21 chr1 102541426 102541757 -94653675 - MTEa LTR MaLR -42 337 1 7 1367 186 43 0 0 chr1 102541822 102541845 -94653587 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1367 230 51 51 0 chr1 102541840 102541879 -94653553 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 7 1367 416 316 119 34 chr1 102541903 102542080 -94653352 + B3A SINE B2 2 193 -5 7 1367 342 0 0 0 chr1 102542558 102542596 -94652836 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1367 26 50 0 0 chr1 102542634 102542674 -94652758 + AT_rich Low_complexity Low_complexity 1 40 0 7 1367 629 283 83 23 chr1 102542829 102543046 -94652386 - B4A SINE B4 -61 231 2 7 1367 368 292 20 40 chr1 102543173 102543273 -94652159 - B1_Mur2 SINE Alu -51 98 1 8 1367 409 280 38 97 chr1 102543656 102543842 -94651590 - MTEa LTR MaLR -200 179 5 8 1367 665 283 139 21 chr1 102544229 102544284 -94651148 + ORR1D2 LTR MaLR 5 64 -306 8 1367 2620 79 41 48 chr1 102544284 102544698 -94650734 + RLTR10A LTR ERVK 1 411 0 8 1367 665 283 139 21 chr1 102544698 102544880 -94650552 + ORR1D2 LTR MaLR 65 270 -100 8 1367 766 299 44 10 chr1 102544894 102545100 -94650332 - B3 SINE B2 0 216 4 8 1367 489 237 0 0 chr1 102545109 102545206 -94650226 + ORR1D2 LTR MaLR 266 362 -8 8 1367 306 198 123 0 chr1 102545639 102545720 -94649712 - MER53 DNA hAT -1 192 102 8 1367 458 338 66 7 chr1 102545946 102546083 -94649349 - B4A SINE B4 -65 227 83 8 1367 297 0 0 0 chr1 102546117 102546150 -94649282 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1367 288 0 0 0 chr1 102546150 102546181 -94649251 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1367 591 258 29 47 chr1 102546181 102546352 -94649080 - B3 SINE B2 -48 168 1 8 1367 613 266 148 3 chr1 102546382 102546725 -94648707 + MTD LTR MaLR 1 407 -12 9 1367 240 235 0 19 chr1 102546739 102546791 -94648641 - B4 SINE B4 -239 53 3 9 1367 446 259 9 61 chr1 102547350 102547465 -94647967 + B4A SINE B4 166 274 -18 9 1367 239 396 11 21 chr1 102548588 102548681 -94646751 - RSINE1 SINE B4 -15 150 59 9 1367 643 243 14 0 chr1 102548729 102548869 -94646563 + B1_Mur4 SINE Alu 1 142 -8 9 1367 235 77 41 8 chr1 102548891 102548946 -94646486 - L1MA6 LINE L1 -23 6277 6219 9 1367 666 218 75 19 chr1 102548947 102549106 -94646326 - RMER6D LTR ERVK 0 720 553 9 1367 1345 200 106 22 chr1 102549127 102549485 -94645947 - RMER6A LTR ERVK -87 669 282 9 1367 1092 201 54 29 chr1 102550072 102550313 -94645119 + Lx5 LINE L1 6356 6602 -448 9 1367 725 234 71 45 chr1 102550778 102551002 -94644430 - LTRIS5 LTR ERV1 0 447 218 9 1367 288 117 200 0 chr1 102551056 102551116 -94644316 - LTRIS5 LTR ERV1 -375 72 1 9 1367 598 289 45 80 chr1 102551222 102551511 -94643921 + RLTR26 LTR ERVK 176 454 -188 1 1367 531 253 57 83 chr1 102552683 102553024 -94642408 - L1Md_F LINE L1 -5810 709 281 1 1367 337 212 33 2 chr1 102553230 102553312 -94642120 - MTEb LTR MaLR -3 376 293 1 1367 621 282 18 24 chr1 102553298 102553465 -94641967 - B4 SINE B4 -124 168 3 1 1367 417 369 22 17 chr1 102553818 102553997 -94641435 + B3A SINE B2 1 180 -18 1 1367 458 327 39 30 chr1 102554059 102554323 -94641109 + MTE2a LTR MaLR 7 274 -147 1 1367 6969 164 24 15 chr1 102554359 102555681 -94639751 + L1_Mur2 LINE L1 3089 4415 -1462 1 1367 3599 118 22 34 chr1 102555681 102556271 -94639161 + Lx LINE L1 6055 6637 -17 1 1367 6969 164 24 15 chr1 102556271 102556302 -94639130 + L1_Mur2 LINE L1 4416 4455 -1422 1 1367 585 76 0 0 chr1 102556303 102556382 -94639050 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 1 1367 403 202 10 21 chr1 102556407 102556503 -94638929 + MTE2a LTR MaLR 285 379 0 1 1367 207 0 0 0 chr1 102556527 102556550 -94638882 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1367 3496 236 128 31 chr1 102556681 102557685 -94637747 + RLTR25A LTR ERVK 1 1101 -2 1 1367 1386 246 52 16 chr1 102558110 102558547 -94636885 + Lx3C LINE L1 6159 6871 -105 1 1367 782 261 6 88 chr1 102558552 102558865 -94636567 - L1VL1 LINE L1 -6147 275 15 1 1367 639 78 0 0 chr1 102559127 102559217 -94636215 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1367 941 324 3 31 chr1 102559222 102559509 -94635923 - B4 SINE B4 -7 285 7 1 1367 335 342 17 17 chr1 102560296 102560415 -94635017 - MTEa LTR MaLR -249 130 12 1 1367 368 254 4 18 chr1 102560445 102560730 -94634702 + (CATA)n Simple_repeat Simple_repeat 1 280 0 1 1367 1232 196 165 50 chr1 102560802 102561141 -94634291 + ORR1C1 LTR MaLR 1 378 0 1 1367 590 312 32 6 chr1 102561929 102562087 -94633345 - 7SK RNA RNA -168 163 2 1 1367 951 269 201 28 chr1 102562735 102563163 -94632269 + RMER5 LTR ERV1 33 534 0 1 1367 362 205 80 9 chr1 102563648 102563761 -94631671 + ORR1C1-int LTR MaLR 1734 1854 -109 1 1367 3008 204 52 50 chr1 102563785 102564471 -94630961 - RLTR25A LTR ERVK -415 688 1 1 1367 1653 203 73 8 chr1 102564471 102564827 -94630605 - MTC LTR MaLR -42 379 1 1 1367 536 301 24 0 chr1 102565291 102565457 -94629975 + RMER15 LTR ERVL 390 559 -16 1 1367 1657 249 24 0 chr1 102565480 102565889 -94629543 + MTD LTR MaLR 1 419 0 1 1367 423 340 85 9 chr1 102566239 102566450 -94628982 + RMER15 LTR ERVL 335 561 -14 1 1367 758 332 0 43 chr1 102566751 102566981 -94628451 + MTE2b LTR MaLR 1 220 -159 1 1367 824 323 92 60 chr1 102566981 102567578 -94627854 + RLTR18 LTR ERVK 1 616 0 1 1367 676 258 31 0 chr1 102567578 102567737 -94627695 + MTE2b LTR MaLR 215 378 -1 1 1367 557 83 12 0 chr1 102567823 102567907 -94627525 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1367 515 316 82 21 chr1 102568243 102568476 -94626956 + MER31A LTR ERV1 194 440 -26 1 1367 26 0 0 0 chr1 102568481 102568507 -94626925 + AT_rich Low_complexity Low_complexity 1 26 0 1 1367 2187 214 69 44 chr1 102569191 102569782 -94625650 + RLTR40 LTR ERVK 31 636 -181 1 1367 192 40 0 0 chr1 102570061 102570086 -94625346 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1367 1353 198 110 16 chr1 102570284 102570602 -94624830 + RLTR1 LTR ERV1 277 624 0 1 1367 192 200 13 26 chr1 102572578 102572655 -94622777 + GA-rich Low_complexity Low_complexity 3 78 0 1 1367 222 294 12 12 chr1 102572681 102572767 -94622665 + GA-rich Low_complexity Low_complexity 1 86 0 1 1367 566 283 118 92 chr1 102573174 102573298 -94622134 - MTE2a LTR MaLR 0 379 259 1 1367 2651 63 0 0 chr1 102573298 102573630 -94621802 - IAPEY3_LTR LTR ERVK 0 332 1 1 1367 566 283 118 92 chr1 102573630 102573820 -94621612 - MTE2a LTR MaLR -121 258 57 1 1367 2501 178 66 4 chr1 102575267 102575736 -94619696 - RLTR26 LTR ERVK -144 498 1 1 1367 486 363 51 51 chr1 102575736 102575913 -94619519 - B4 SINE B4 -39 253 85 1 1367 408 55 0 0 chr1 102575913 102575968 -94619464 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1367 486 363 51 51 chr1 102575968 102575998 -94619434 - B4 SINE B4 -208 84 48 1 1367 895 250 82 17 chr1 102576067 102576299 -94619133 - MTEa LTR MaLR -1 378 132 1 1367 3212 53 8 0 chr1 102576335 102576728 -94618704 + MTA_Mm LTR MaLR 1 396 0 1 1367 7201 69 8 5 chr1 102577651 102578626 -94616806 + L1_Mus2 LINE L1 5588 6565 -1 1 1367 348 311 101 39 chr1 102579765 102580073 -94615359 - L1MC5 LINE L1 -398 7563 7237 1 1367 242 303 36 68 chr1 102580143 102580289 -94615143 + B3A SINE B2 3 168 -30 1 1367 22 56 0 0 chr1 102580360 102580396 -94615036 + AT_rich Low_complexity Low_complexity 1 36 0 1 1367 391 245 119 30 chr1 102580416 102580584 -94614848 - B2_Mm2 SINE B2 -11 184 2 1 1367 323 266 69 80 chr1 102580589 102580777 -94614655 - L1MC5 LINE L1 -829 7132 6947 1 1367 410 320 106 67 chr1 102581002 102581210 -94614222 - B4 SINE B4 -22 270 55 1 1367 26 30 0 0 chr1 102581257 102581290 -94614142 + AT_rich Low_complexity Low_complexity 1 33 0 1 1367 243 0 0 0 chr1 102582810 102582837 -94612595 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1367 613 277 161 25 chr1 102582989 102583335 -94612097 + RMER15 LTR ERVL 84 573 -2 1 1367 1673 163 178 12 chr1 102583723 102584065 -94611367 + MT2B LTR ERVL 6 404 -197 1 1367 9499 175 18 62 chr1 102584065 102584136 -94611296 - L1_Mur2 LINE L1 -998 4879 4812 1 1367 1588 187 9 63 chr1 102584136 102584484 -94610948 + ORR1A4 LTR MaLR 1 329 0 1 1367 9499 175 18 62 chr1 102584484 102585921 -94609511 - L1_Mur2 LINE L1 -1066 4811 3368 1 1367 5547 20 3 6 chr1 102585921 102586567 -94608865 + L1Md_A LINE L1 5939 6582 0 1 1367 9499 175 18 62 chr1 102586567 102586732 -94608700 - L1_Mur2 LINE L1 -2510 3367 3217 1 1367 3237 48 2 8 chr1 102586732 102587130 -94608302 - MTA_Mm LTR MaLR 0 396 1 1 1367 9499 175 18 62 chr1 102587130 102587795 -94607637 - L1_Mur2 LINE L1 -2661 3216 2640 1 1367 302 59 15 0 chr1 102587934 102588002 -94607430 + (TTTTC)n Simple_repeat Simple_repeat 1 68 0 1 1367 683 124 9 0 chr1 102588014 102588127 -94607305 + (TC)n Simple_repeat Simple_repeat 2 115 0 1 1367 935 113 7 0 chr1 102588127 102588269 -94607163 - B1_Mm SINE Alu 0 147 5 1 1367 314 238 35 106 chr1 102588335 102588476 -94606956 - RLTR14-int LTR ERV1 -4740 577 447 1 1367 557 328 100 58 chr1 102589518 102589777 -94605655 + B4 SINE B4 6 275 -17 1 1367 336 48 0 0 chr1 102589802 102589844 -94605588 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1367 523 273 20 27 chr1 102590034 102590181 -94605251 + B3A SINE B2 19 164 -34 1 1367 1274 304 83 11 chr1 102590191 102590647 -94604785 - RMER20A LTR ERVK -6 510 22 1 1367 198 222 0 0 chr1 102590677 102590731 -94604701 + (CATA)n Simple_repeat Simple_repeat 1 54 0 1 1367 626 254 78 17 chr1 102590901 102591081 -94604351 - B3 SINE B2 -4 191 1 1 1367 919 179 46 0 chr1 102591610 102591805 -94603627 - Lx LINE L1 0 6654 6451 1 1367 636 171 51 0 chr1 102591806 102591923 -94603509 + ETnERV2-int LTR ERVK 7070 7192 -214 1 1367 3067 155 91 43 chr1 102592277 102592945 -94602487 - Lx LINE L1 -186 6468 5769 1 1367 1190 304 52 77 chr1 102593560 102594077 -94601355 - RLTR26 LTR ERVK -7 635 132 1 1367 243 0 0 0 chr1 102594182 102594209 -94601223 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1367 387 0 0 0 chr1 102594240 102594283 -94601149 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1367 1059 76 0 40 chr1 102594335 102594486 -94600946 - B1_Mm SINE Alu -2 145 1 1 1367 560 358 33 59 chr1 102594576 102594849 -94600583 - B4 SINE B4 -25 267 2 1 1367 250 231 261 17 chr1 102594954 102595073 -94600359 + MIR SINE MIR 107 254 -8 1 1367 426 65 0 0 chr1 102595542 102595604 -94599828 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1367 337 283 30 174 chr1 102595604 102595805 -94599627 - ID_B1 SINE B4 -13 211 40 1 1367 957 212 18 22 chr1 102596053 102596183 -94599249 - URR1B DNA MER1_type 0 225 93 1 1367 1053 58 58 0 chr1 102596183 102596320 -94599112 - B1_Mm SINE Alu -1 146 2 1 1367 957 212 18 22 chr1 102596320 102596411 -94599021 - URR1B DNA MER1_type -133 92 5 1 1367 2273 212 55 32 chr1 102597088 102597594 -94597838 + RMER13B LTR ERVK 391 908 0 1 1367 422 341 64 47 chr1 102597597 102597831 -94597601 - B4A SINE B4 -41 251 14 1 1367 878 319 23 36 chr1 102598157 102598460 -94596972 + ORR1E LTR MaLR 1 299 -60 1 1367 194 0 0 37 chr1 102598901 102598928 -94596504 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1367 413 364 0 0 chr1 102598950 102599115 -94596317 - B4 SINE B4 -99 193 29 1 1367 266 308 39 0 chr1 102599559 102599637 -94595795 - Zaphod DNA Tip100 -3626 405 325 1 1367 258 264 56 0 chr1 102599709 102599781 -94595651 + Zaphod DNA Tip100 51 126 -3905 1 1367 1152 281 40 12 chr1 102599815 102600139 -94595293 - ORR1E LTR MaLR 0 359 27 1 1367 338 323 106 5 chr1 102600158 102600357 -94595075 - MLT2D LTR ERVL -170 244 26 1 1367 219 284 34 0 chr1 102600897 102600985 -94594447 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1367 8061 53 3 2 chr1 102601468 102602532 -94592900 + L1Md_F3 LINE L1 4521 5585 -298 1 1367 8056 41 8 13 chr1 102602533 102603535 -94591897 + L1Md_F3 LINE L1 5587 6583 -1 1 1367 305 125 0 18 chr1 102603850 102603907 -94591525 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1367 579 184 0 0 chr1 102604041 102604177 -94591255 + CT-rich Low_complexity Low_complexity 2 137 0 1 1367 374 328 158 50 chr1 102604241 102604501 -94590931 - B4A SINE B4 0 292 5 1 1367 194 256 0 0 chr1 102604648 102604687 -94590745 - MER5B DNA MER1_type -127 51 13 1 1367 304 258 0 0 chr1 102605129 102605191 -94590241 - Tigger5 DNA MER2_type -1 2405 2344 1 1367 22 0 0 0 chr1 102605240 102605262 -94590170 + AT_rich Low_complexity Low_complexity 1 22 0 1 1367 2190 240 40 4 chr1 102605604 102606110 -94589322 - RLTR11A2 LTR ERVK -1 526 3 1 1367 282 171 0 0 chr1 102606110 102606180 -94589252 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1367 574 288 14 7 chr1 102606201 102606348 -94589084 - RSINE1 SINE B4 -1 164 17 1 1367 447 52 0 0 chr1 102606509 102606567 -94588865 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1367 275 336 18 0 chr1 102607125 102607235 -94588197 + PB1D10 SINE Alu 4 115 -2 1 1367 362 345 80 11 chr1 102607655 102607831 -94587601 - B3A SINE B2 -10 188 1 1 1367 292 380 50 0 chr1 102608597 102608718 -94586714 - B4 SINE B4 -15 277 151 2 1367 374 271 0 125 chr1 102608727 102608879 -94586553 - RLTR21 LTR ERVK -2 1570 1438 2 1367 399 21 0 0 chr1 102608896 102608944 -94586488 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1367 3796 128 9 96 chr1 102608965 102609039 -94586393 - RMER12B LTR ERVK -230 1174 1051 2 1367 221 0 0 33 chr1 102609039 102609069 -94586363 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1367 3796 231 91 16 chr1 102609069 102610039 -94585393 - RMER12B LTR ERVK -354 1050 2 2 1367 304 352 11 0 chr1 102610039 102610128 -94585304 - B4 SINE B4 -142 150 61 2 1367 546 40 0 13 chr1 102610698 102610774 -94584658 + RLTR45-int LTR ERVK 7170 7244 0 2 1367 2338 58 95 0 chr1 102610774 102611101 -94584331 + RLTR45 LTR ERVK 1 358 -124 2 1367 363 294 45 9 chr1 102611142 102611279 -94584153 - MTE2a LTR MaLR -246 173 35 2 1367 265 247 71 20 chr1 102611945 102612044 -94583388 + GA-rich Low_complexity Low_complexity 2 105 0 2 1367 593 362 38 0 chr1 102612060 102612270 -94583162 + B4A SINE B4 1 218 -74 2 1367 3315 200 70 69 chr1 102612298 102613196 -94582236 + RMER19B LTR ERVK 3 901 -1 2 1367 494 95 0 0 chr1 102613198 102613272 -94582160 + MusHAL1 LINE L1 1243 1316 -1396 2 1367 10311 191 61 93 chr1 102613279 102614651 -94580781 + Lx2 LINE L1 2826 4220 -1666 2 1367 210 37 0 0 chr1 102614651 102614678 -94580754 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1367 10311 188 59 81 chr1 102614678 102616442 -94578990 + Lx2 LINE L1 4221 5859 -27 2 1367 525 71 0 0 chr1 102616442 102616512 -94578920 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1367 6643 171 48 13 chr1 102616512 102617602 -94577830 + Lx2 LINE L1 5859 6996 -1 2 1367 246 136 0 0 chr1 102617628 102617672 -94577760 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1367 1045 123 0 0 chr1 102617676 102617822 -94577610 - B1_Mus1 SINE Alu 0 148 3 2 1367 507 303 188 0 chr1 102617887 102618052 -94577380 + ID_B1 SINE B4 3 198 -26 2 1367 225 326 50 30 chr1 102617970 102618071 -94577361 + B1F SINE Alu 10 112 -37 2 1367 1088 36 7 0 chr1 102618102 102618239 -94577193 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 2 1367 524 367 32 11 chr1 102618499 102618780 -94576652 - B4A SINE B4 -4 288 2 2 1367 671 269 36 5 chr1 102619715 102619909 -94575523 - B3 SINE B2 -13 203 4 2 1367 1785 165 24 62 chr1 102620109 102620445 -94574987 + ORR1A3 LTR MaLR 1 323 -3 2 1367 207 69 0 0 chr1 102620465 102620494 -94574938 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1367 853 150 0 0 chr1 102621278 102621411 -94574021 - L1_Mus3 LINE L1 -115 6523 6391 2 1367 822 21 0 0 chr1 102621423 102621519 -94573913 + (GAA)n Simple_repeat Simple_repeat 2 97 0 2 1367 378 100 0 0 chr1 102621568 102621628 -94573804 + (CTTA)n Simple_repeat Simple_repeat 3 62 0 2 1367 273 276 128 8 chr1 102622047 102622164 -94573268 + LTR85a LTR Gypsy? 57 187 -515 2 1367 750 294 49 5 chr1 102622699 102622884 -94572548 + B4A SINE B4 1 193 -99 2 1367 204 40 0 0 chr1 102622914 102622939 -94572493 + (CATA)n Simple_repeat Simple_repeat 1 25 0 2 1367 387 0 0 0 chr1 102623287 102623330 -94572102 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1367 285 29 0 0 chr1 102623330 102623363 -94572069 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1367 292 235 83 36 chr1 102623719 102623803 -94571629 + MTEa LTR MaLR 278 365 -14 2 1367 526 275 5 15 chr1 102624469 102624674 -94570758 + B4 SINE B4 6 269 -23 2 1367 335 78 0 19 chr1 102625411 102625463 -94569969 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2 1367 742 253 9 14 chr1 102625465 102625638 -94569794 + B3A SINE B2 1 175 -41 2 1367 531 0 0 0 chr1 102625639 102625698 -94569734 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1367 237 33 0 0 chr1 102625698 102625727 -94569705 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1367 1577 160 22 107 chr1 102625800 102626156 -94569276 - ORR1A3 LTR MaLR 0 326 1 2 1367 609 332 127 56 chr1 102626257 102626525 -94568907 - B4A SINE B4 0 292 6 2 1367 1084 92 0 0 chr1 102626733 102626874 -94568558 + B1_Mm SINE Alu 1 141 -6 2 1367 5134 31 2 3 chr1 102626877 102627483 -94567949 + L1Md_F2 LINE L1 5978 6582 0 2 1367 1776 94 11 40 chr1 102627520 102627797 -94567635 + L1_Mus2 LINE L1 6298 6566 0 2 1367 1972 121 15 16 chr1 102627819 102628204 -94567228 + ORR1A2 LTR MaLR 1 343 -51 2 1367 25 0 0 0 chr1 102628204 102628229 -94567203 + AT_rich Low_complexity Low_complexity 1 25 0 2 1367 22 0 0 0 chr1 102628828 102628850 -94566582 + AT_rich Low_complexity Low_complexity 1 22 0 2 1367 287 347 142 7 chr1 102628994 102629142 -94566290 + B4 SINE B4 125 292 0 2 170 196 104 20 40 chr1 102629340 102629390 -94566042 + T-rich Low_complexity Low_complexity 2 50 0 2 1368 663 353 54 4 chr1 102629712 102629971 -94565461 - B4A SINE B4 0 292 21 2 1368 315 0 0 0 chr1 102630107 102630142 -94565290 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 1368 26 0 0 0 chr1 102630567 102630593 -94564839 + AT_rich Low_complexity Low_complexity 1 26 0 2 1368 194 30 0 83 chr1 102630621 102630657 -94564775 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1368 382 188 12 0 chr1 102631132 102631212 -94564220 + L1_Mm LINE L1 5275 5355 -528 2 1368 671 124 9 0 chr1 102631705 102631818 -94563614 + (TC)n Simple_repeat Simple_repeat 1 114 0 2 1368 21 36 0 0 chr1 102631832 102631860 -94563572 + AT_rich Low_complexity Low_complexity 1 28 0 2 1368 504 32 0 0 chr1 102631954 102632016 -94563416 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1368 982 233 90 56 chr1 102634028 102634221 -94561211 + MT2A LTR ERVL 1 203 -330 2 1368 597 52 0 0 chr1 102634221 102634298 -94561134 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 2 1368 982 233 90 56 chr1 102634298 102634372 -94561060 + MT2A LTR ERVL 204 277 -256 2 1368 1006 289 118 24 chr1 102634385 102634545 -94560887 + ORR1D1 LTR MaLR 1 165 -209 2 1368 3579 34 70 2 chr1 102634545 102634990 -94560442 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1368 1006 289 118 24 chr1 102634990 102635159 -94560273 + ORR1D1 LTR MaLR 166 361 -13 2 1368 714 12 0 0 chr1 102635456 102635539 -94559893 + (TTAGGG)n Simple_repeat Simple_repeat 6 88 0 2 1368 25 65 0 0 chr1 102636910 102636956 -94558476 + AT_rich Low_complexity Low_complexity 1 46 0 2 1368 5958 105 21 9 chr1 102637291 102638247 -94557185 - L1_Mus3 LINE L1 -2 6636 5670 2 1368 239 363 39 60 chr1 102640006 102640188 -94555244 + RLTR25B LTR ERVK 851 1028 0 2 1368 495 118 0 0 chr1 102640193 102640269 -94555163 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1368 295 403 7 7 chr1 102640409 102640549 -94554883 - B4 SINE B4 -120 172 33 2 1368 180 0 0 0 chr1 102640770 102640790 -94554642 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1368 840 280 54 19 chr1 102641009 102641326 -94554106 - RLTR22_Mur LTR ERVK -1045 803 476 2 1368 881 43 9 0 chr1 102641325 102641440 -94553992 - B1_Mm SINE Alu 0 147 32 2 1368 200 59 29 0 chr1 102641448 102641482 -94553950 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1368 243 242 30 90 chr1 102641560 102641660 -94553772 + RLTR23 LTR ERV1 306 399 -31 2 1368 35578 51 1 4 chr1 102642777 102649160 -94546272 - L1Md_T LINE L1 0 6585 126 2 1368 216 0 0 0 chr1 102649237 102649261 -94546171 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1368 375 23 0 0 chr1 102649262 102649306 -94546126 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1368 217 290 65 0 chr1 102649689 102649751 -94545681 + ID4_ SINE ID 2 67 -16 2 1368 277 254 44 103 chr1 102650051 102650187 -94545245 + RMER15 LTR ERVL 1 128 -447 2 1368 390 388 33 52 chr1 102650222 102650529 -94544903 + RMER15 LTR ERVL 275 575 0 2 1368 36865 8 0 1 chr1 102650895 102656890 -94538542 + L1Md_A LINE L1 1 5586 -297 2 1368 9024 4 0 0 chr1 102656890 102657886 -94537546 + L1Md_A LINE L1 5587 6582 0 2 1368 486 0 0 0 chr1 102658106 102658160 -94537272 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1368 291 28 0 0 chr1 102658162 102658198 -94537234 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1368 431 339 39 49 chr1 102658219 102658424 -94537008 - B4 SINE B4 -86 206 4 2 1368 224 282 91 34 chr1 102658664 102658752 -94536680 + ID_B1 SINE B4 3 95 -129 2 1368 3828 129 15 126 chr1 102658752 102659613 -94535819 - RMER17A LTR ERVK 0 751 1 2 1368 417 320 10 0 chr1 102659613 102659716 -94535716 + ID_B1 SINE B4 90 193 -31 2 1368 202 155 33 33 chr1 102659993 102660053 -94535379 + A-rich Low_complexity Low_complexity 3 62 0 2 1368 858 209 20 60 chr1 102660385 102660584 -94534848 - MTEa LTR MaLR 0 379 189 2 1368 210 128 0 0 chr1 102660694 102660733 -94534699 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 1368 525 68 0 0 chr1 102660740 102660814 -94534618 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1368 976 284 34 19 chr1 102660865 102661134 -94534298 - MTEa LTR MaLR -106 273 1 2 1368 2607 162 12 33 chr1 102662262 102662747 -94532685 - MT2C_Mm LTR ERVL 0 475 1 2 1368 325 153 13 40 chr1 102662785 102662860 -94532572 - ORR1A3-int LTR MaLR -1323 640 568 2 1368 280 65 65 0 chr1 102662866 102662912 -94532520 - MERVL_2A-int LTR ERVL -138 5623 5575 2 1368 5619 63 0 3 chr1 102663005 102663722 -94531710 - L1Md_F2 LINE L1 0 6582 5868 2 1368 2674 67 8 0 chr1 102663722 102664081 -94531351 + L1Md_F2 LINE L1 5520 5881 -2 2 1368 6907 156 31 5 chr1 102664082 102665249 -94530183 - MERVL_2A-int LTR ERVL -276 5485 4289 2 1368 485 321 39 35 chr1 102665249 102665452 -94529980 + B4 SINE B4 36 239 -53 2 1368 2387 225 143 5 chr1 102665452 102666226 -94529206 + Lx7 LINE L1 6536 7416 -280 2 1368 23 0 0 0 chr1 102666438 102666461 -94528971 + AT_rich Low_complexity Low_complexity 1 23 0 2 1368 329 135 27 0 chr1 102666619 102666693 -94528739 + GA-rich Low_complexity Low_complexity 4 79 0 2 1368 401 284 182 55 chr1 102666704 102666957 -94528475 - MER31A LTR ERV1 -52 433 149 2 1368 956 308 7 25 chr1 102667487 102667767 -94527665 - B4A SINE B4 -10 282 8 2 1368 225 0 0 0 chr1 102668171 102668196 -94527236 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1368 438 108 0 0 chr1 102668196 102668260 -94527172 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1368 289 64 12 93 chr1 102671185 102671271 -94524161 + T-rich Low_complexity Low_complexity 1 79 0 2 1368 2914 141 52 103 chr1 102671581 102672143 -94523289 - RMER17D LTR ERVK -6 883 320 2 1368 1104 90 0 0 chr1 102672143 102672277 -94523155 + B1_Mm SINE Alu 1 134 -13 3 1368 534 31 0 0 chr1 102672278 102672342 -94523090 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1368 2914 141 52 103 chr1 102672342 102672455 -94522977 - RMER17D LTR ERVK -570 319 242 2 1368 3691 51 0 33 chr1 102672455 102672938 -94522494 - LTRIS_Mm LTR ERV1 0 482 16 3 1368 13627 284 37 44 chr1 102672938 102680119 -94515313 - RLTR6-int LTR ERV1 -3 7775 406 3 1368 2353 57 3 7 chr1 102680108 102680409 -94515023 - RLTR6-int LTR ERV1 -4390 300 1 3 1368 4168 56 0 32 chr1 102680409 102680907 -94514525 - LTRIS_Mm LTR ERV1 0 482 1 3 1368 1275 114 73 37 chr1 102680907 102681094 -94514338 - RMER17A LTR ERVK -525 226 35 3 1368 3850 44 5 2 chr1 102681094 102681529 -94513903 - RLTR10C LTR ERVK 0 436 1 3 1368 1275 114 73 37 chr1 102681529 102681559 -94513873 - RMER17A LTR ERVK -717 34 1 3 1368 2090 179 3 3 chr1 102681651 102682016 -94513416 - L1_Mm LINE L1 -3 5880 5516 3 1368 2690 302 13 34 chr1 102682018 102682838 -94512594 - RodERV21-int LTR ERV1 -2296 2695 1893 3 1368 416 335 69 0 chr1 102683383 102683556 -94511876 - Charlie1a DNA MER1_type -1270 185 1 3 1368 387 261 172 92 chr1 102684410 102684747 -94510685 + RLTR9A LTR ERVK 5 368 0 3 1368 260 220 3 9 chr1 102684884 102684946 -94510486 - MTD LTR MaLR -2 392 317 3 1368 584 264 74 23 chr1 102685100 102685279 -94510153 - RMER21B LTR ERV1 -350 492 302 3 1368 441 0 0 0 chr1 102685279 102685328 -94510104 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1368 584 264 74 23 chr1 102685328 102685365 -94510067 - RMER21B LTR ERV1 -541 301 265 3 1368 22 0 0 0 chr1 102685386 102685408 -94510024 + AT_rich Low_complexity Low_complexity 1 22 0 3 1368 478 252 79 7 chr1 102685438 102685578 -94509854 - MTD LTR MaLR -255 164 15 3 1368 264 382 111 33 chr1 102685988 102686294 -94509138 - Charlie16a DNA MER1_type -9 333 4 3 1368 347 333 33 8 chr1 102686728 102686849 -94508583 + B4 SINE B4 5 128 -164 3 1368 878 295 83 21 chr1 102687017 102687356 -94508076 + Lx8 LINE L1 6184 6543 -930 3 1368 309 308 77 64 chr1 102687359 102687515 -94507917 - RLTR14 LTR ERV1 0 382 225 3 1368 1117 291 60 52 chr1 102687789 102688209 -94507223 + Lx8 LINE L1 6561 6983 -490 3 1368 16595 143 74 52 chr1 102688221 102693745 -94501687 + L1_Mus1 LINE L1 395 6567 0 3 1368 575 333 86 7 chr1 102694059 102694360 -94501072 + ORR1E LTR MaLR 1 342 -17 3 1368 551 357 5 5 chr1 102694793 102694993 -94500439 - Lx8 LINE L1 -160 7313 7114 3 1368 1090 90 7 40 chr1 102695078 102695229 -94500203 + B1_Mus1 SINE Alu 2 147 -1 3 1368 409 304 42 30 chr1 102695235 102695401 -94500031 - Lx8 LINE L1 -497 6976 6809 3 1368 318 332 147 5 chr1 102695495 102695719 -94499713 - RMER15 LTR ERVL 0 575 320 3 1368 888 131 0 0 chr1 102695819 102695994 -94499438 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 3 1368 201 238 0 0 chr1 102698122 102698164 -94497268 + MIR SINE MIR 94 135 -73 3 1368 21 36 0 0 chr1 102698292 102698320 -94497112 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 342 319 11 0 chr1 102698332 102698423 -94497009 - B3A SINE B2 -46 152 61 3 1368 231 350 19 29 chr1 102698407 102698510 -94496922 + B1F SINE Alu 41 142 -7 3 1368 2334 196 13 13 chr1 102698639 102699099 -94496333 + RMER6B LTR ERVK 1 460 -1 3 1368 1051 273 30 7 chr1 102699438 102699733 -94495699 - Lx2B LINE L1 -13 6987 6686 3 1368 813 21 0 0 chr1 102700033 102700128 -94495304 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 3 1368 4888 47 2 7 chr1 102700128 102700704 -94494728 + L1Md_F2 LINE L1 6010 6582 0 3 1368 1526 306 18 20 chr1 102700840 102701393 -94494039 + RNERVK23-int LTR ERVK 7246 7797 -420 3 1368 579 312 0 0 chr1 102701449 102701603 -94493829 + ETnERV2-int LTR ERVK 6493 6646 -760 3 1368 938 214 5 25 chr1 102702315 102702512 -94492920 - Lx2B LINE L1 -308 6692 6500 3 1368 276 30 0 0 chr1 102702855 102702888 -94492544 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1368 2628 264 79 82 chr1 102702915 102703033 -94492399 - L1Md_F2 LINE L1 0 7009 6896 3 1368 4866 147 134 61 chr1 102703033 102703983 -94491449 - RLTR13D2 LTR ERVK -4 1019 1 3 1368 7257 113 24 22 chr1 102703983 102705204 -94490228 - L1Md_F2 LINE L1 -114 6895 5674 3 1368 5771 116 109 11 chr1 102705204 102705811 -94489621 - Lx3_Mus LINE L1 -387 6622 5921 3 1368 207 0 0 0 chr1 102705811 102705834 -94489598 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 3 1368 29887 111 51 6 chr1 102705834 102711019 -94484413 - Lx3_Mus LINE L1 -1089 5920 32 3 1368 906 264 6 108 chr1 102711016 102711360 -94484072 - L1_Mur1 LINE L1 -6666 316 8 3 1368 239 0 32 0 chr1 102712729 102712760 -94482672 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1368 525 159 30 8 chr1 102712776 102712909 -94482523 + CT-rich Low_complexity Low_complexity 2 137 0 3 1368 631 274 27 0 chr1 102713571 102713717 -94481715 + ID_B1 SINE B4 63 212 -12 3 1368 519 273 78 0 chr1 102714587 102714740 -94480692 + MTEa LTR MaLR 18 182 -197 3 1368 764 162 134 0 chr1 102714740 102714882 -94480550 + B2_Mm2 SINE B2 1 161 -34 3 1368 476 192 48 0 chr1 102714893 102714997 -94480435 + B2_Mm2 SINE B2 87 195 0 3 1368 730 262 21 16 chr1 102715048 102715242 -94480190 + MTEa LTR MaLR 168 362 -17 3 1368 5759 201 16 25 chr1 102715484 102716768 -94478664 - ORR1A1-int LTR MaLR -352 1440 169 3 1368 902 188 198 13 chr1 102716927 102717435 -94477997 + L1_Mur2 LINE L1 984 1646 -4231 3 1368 531 220 4 0 chr1 102717430 102717565 -94477867 + L1_Mur2 LINE L1 1347 1484 -4396 3 1368 1269 286 41 50 chr1 102717575 102718068 -94477364 + RLTR20B3 LTR ERVK 22 511 -66 3 1368 10182 201 67 65 chr1 102718117 102718632 -94476800 + L1_Mur2 LINE L1 1480 2052 -3825 3 1368 411 38 0 0 chr1 102718632 102718685 -94476747 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1368 10182 201 67 65 chr1 102718685 102721117 -94474315 + L1_Mur2 LINE L1 2053 4431 -1446 3 1368 3106 183 6 9 chr1 102721128 102721673 -94473759 + Lx LINE L1 6109 6651 -3 3 1368 248 228 312 11 chr1 102721953 102722046 -94473386 - RSINE1 SINE B4 -42 123 3 3 1368 807 88 0 0 chr1 102722094 102722207 -94473225 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 3 1368 25 0 0 0 chr1 102722425 102722450 -94472982 + AT_rich Low_complexity Low_complexity 1 25 0 3 1368 895 254 28 0 chr1 102722450 102722627 -94472805 - B4 SINE B4 -2 290 109 3 1368 685 367 18 25 chr1 102723796 102724081 -94471351 + B4 SINE B4 10 292 0 3 1368 330 98 0 0 chr1 102724094 102724145 -94471287 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1368 686 263 133 19 chr1 102724148 102724412 -94471020 + MLT1A0 LTR MaLR 35 328 -37 3 1368 199 293 0 0 chr1 102724685 102724726 -94470706 + L4 LINE RTE 1787 1827 -202 3 1368 461 365 21 21 chr1 102725014 102725305 -94470127 - B4 SINE B4 0 292 2 3 1368 1655 203 108 17 chr1 102725418 102725563 -94469869 + MTB_Mm LTR MaLR 1 162 -245 3 1368 7315 40 16 0 chr1 102725563 102726461 -94468971 + L1Md_F3 LINE L1 5673 6584 0 3 1368 1655 203 108 17 chr1 102726461 102726675 -94468757 + MTB_Mm LTR MaLR 163 392 -15 3 1368 814 275 27 14 chr1 102726688 102726909 -94468523 - MTC LTR MaLR 0 419 196 3 1368 225 0 0 0 chr1 102726909 102726934 -94468498 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1368 21 36 0 0 chr1 102727775 102727803 -94467629 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 1268 102 32 0 chr1 102727871 102728058 -94467374 - B2_Mm1t SINE B2 0 193 1 3 1368 32897 70 9 1 chr1 102728137 102733780 -94461652 - L1Md_F2 LINE L1 -12 6573 789 3 1368 961 189 40 5 chr1 102733765 102733967 -94461465 - L1Md_F2 LINE L1 -6304 315 107 3 1368 837 257 0 11 chr1 102734931 102735120 -94460312 - MTC LTR MaLR -234 187 1 3 1368 505 258 25 0 chr1 102735328 102735448 -94459984 + Lx8 LINE L1 6932 7054 -419 3 1368 931 239 47 13 chr1 102735447 102735680 -94459752 + L1VL2 LINE L1 122 362 -5973 3 1368 210 37 0 0 chr1 102736194 102736221 -94459211 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1368 1566 97 48 16 chr1 102736801 102737053 -94458379 - L1_Mus3 LINE L1 -5 6633 6374 3 1368 314 150 37 24 chr1 102737080 102737162 -94458270 - L1_Mus2 LINE L1 0 6566 6484 3 1368 4457 138 53 11 chr1 102737162 102738774 -94456658 - L1Md_F LINE L1 -4007 1876 215 3 1368 315 338 96 15 chr1 102738894 102739029 -94456403 - RSINE1 SINE B4 -17 148 3 3 1368 25 96 0 17 chr1 102739057 102739134 -94456298 + AT_rich Low_complexity Low_complexity 1 76 0 3 1368 1146 88 0 0 chr1 102739134 102739281 -94456151 - B1_Mus1 SINE Alu -1 147 1 3 1368 25 96 0 17 chr1 102739281 102739320 -94456112 + AT_rich Low_complexity Low_complexity 1 39 0 3 1368 240 299 0 0 chr1 102740083 102740150 -94455282 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1368 3879 164 27 35 chr1 102740178 102740925 -94454507 + Lx LINE L1 5914 6654 0 3 1368 2564 143 12 25 chr1 102741175 102741452 -94453980 - Lx LINE L1 -582 6072 5799 3 1368 1082 90 0 7 chr1 102741452 102741598 -94453834 - B1_Mus1 SINE Alu -1 147 3 3 1368 2564 155 22 24 chr1 102741598 102741830 -94453602 - Lx LINE L1 -474 5817 5580 3 1368 11017 180 18 13 chr1 102741831 102744558 -94450874 + Lx LINE L1 3496 6233 -421 3 1368 2662 36 12 130 chr1 102744558 102744972 -94450460 - RLTR10B2 LTR ERVK 0 365 1 3 1368 5521 174 23 9 chr1 102744972 102745374 -94450058 + Lx LINE L1 6234 6650 -4 3 1368 4046 131 9 14 chr1 102745536 102746293 -94449139 - MusHAL1 LINE L1 -1797 915 163 3 1368 761 82 9 0 chr1 102746295 102746405 -94449027 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 1368 188 35 35 0 chr1 102746407 102746436 -94448996 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1368 833 95 0 0 chr1 102746436 102746552 -94448880 - B1_Mus2 SINE Alu -11 136 21 3 1368 3427 203 76 81 chr1 102746561 102747638 -94447794 - L1VL2 LINE L1 -5290 1045 58 3 1368 293 245 43 14 chr1 102747639 102747780 -94447652 + MER33 DNA MER1_type 143 287 -37 3 1368 256 0 0 115 chr1 102749000 102749061 -94446371 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1368 22 35 0 0 chr1 102750223 102750252 -94445180 + AT_rich Low_complexity Low_complexity 1 29 0 3 1368 734 76 7 102 chr1 102751076 102751223 -94444209 - RLTRETN_Mm LTR ERVK -189 133 1 3 1368 33393 74 13 17 chr1 102751223 102756088 -94439344 - MMETn-int LTR ERVK 0 4844 1 3 1368 1480 102 204 50 chr1 102756088 102756367 -94439065 - RLTRETN_Mm LTR ERVK 0 322 1 3 1368 3403 56 22 2 chr1 102756708 102757155 -94438277 - LTRIS2 LTR ERV1 0 564 109 3 1368 1585 259 17 171 chr1 102757378 102758101 -94437331 - RMER19C LTR ERVK 0 611 1 3 1368 267 164 0 47 chr1 102758101 102758165 -94437267 - MurERV4_19-int LTR ERVK 0 5780 5720 3 1368 523 260 47 0 chr1 102758555 102758682 -94436750 - ETnERV2-int LTR ERVK -204 7202 7070 3 1368 3962 210 45 73 chr1 102758680 102758980 -94436452 - MurERV4_19-int LTR ERVK -52 5728 5443 3 1368 360 0 0 0 chr1 102758980 102759020 -94436412 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1368 3962 210 45 73 chr1 102759020 102760118 -94435314 - MurERV4_19-int LTR ERVK -338 5442 4369 3 21 13723 182 59 27 chr1 102760125 102761157 -94434275 - MurERV4_19-int LTR ERVK -1712 4068 3002 3 1369 405 0 0 0 chr1 102761157 102761202 -94434230 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1369 13723 182 59 27 chr1 102761202 102762132 -94433300 - MurERV4_19-int LTR ERVK -2779 3001 2029 3 1369 188 286 0 51 chr1 102762132 102762191 -94433241 - MIRb SINE MIR -206 62 7 3 1369 13723 182 59 27 chr1 102762191 102763005 -94432427 - MurERV4_19-int LTR ERVK -2779 2028 1176 3 1369 3417 63 0 2 chr1 102763005 102763451 -94431981 - L1Md_F2 LINE L1 -2 6580 6136 3 1369 13723 182 59 27 chr1 102763451 102763783 -94431649 - MurERV4_19-int LTR ERVK -4605 1175 799 3 1369 3111 164 16 23 chr1 102763784 102764357 -94431075 - RLTR1D LTR ERV1 0 605 37 3 1369 2736 232 78 11 chr1 102764370 102764734 -94430698 - MurERV4_19-int LTR ERVK -4995 785 411 3 1369 3065 61 2 10 chr1 102764734 102765133 -94430299 - MTA_Mm LTR MaLR 0 396 1 4 1369 2736 232 78 11 chr1 102765133 102765491 -94429941 - MurERV4_19-int LTR ERVK -5370 410 15 3 1369 1106 281 24 70 chr1 102765491 102765920 -94429512 - RMER19C LTR ERVK 0 611 153 3 1369 508 297 54 44 chr1 102766066 102766270 -94429162 - RMER19C LTR ERVK -332 279 74 4 1369 25695 146 12 10 chr1 102766357 102770692 -94424740 + L1_Mus2 LINE L1 668 5031 -852 4 1369 7360 15 2 0 chr1 102770692 102771512 -94423920 + RLTR13B2 LTR ERVK 1 822 0 4 1369 25695 142 13 8 chr1 102771512 102771788 -94423644 + L1_Mus2 LINE L1 5032 5299 -584 4 1369 1320 47 0 0 chr1 102771788 102771957 -94423475 + L1Md_A LINE L1 6413 6581 -1 4 1369 25695 113 5 3 chr1 102771957 102772730 -94422702 + L1_Mus2 LINE L1 5300 6077 -489 4 1369 434 356 13 26 chr1 102772815 102772968 -94422464 - RSINE1 SINE B4 -10 155 5 4 1369 231 288 0 0 chr1 102773291 102773350 -94422082 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 4 1369 457 106 10 21 chr1 102773350 102773446 -94421986 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 4 1369 31 44 0 0 chr1 102773501 102773546 -94421886 + AT_rich Low_complexity Low_complexity 1 45 0 4 1369 32 26 0 0 chr1 102773641 102773680 -94421752 + AT_rich Low_complexity Low_complexity 1 39 0 4 1369 704 299 36 0 chr1 102773912 102774106 -94421326 - ID_B1 SINE B4 -5 219 19 4 1369 251 277 15 30 chr1 102774046 102774113 -94421319 - ID4 SINE ID -3 80 15 4 1369 586 299 132 17 chr1 102775510 102775799 -94419633 - RMER10A LTR ERVL 0 442 121 4 1369 4577 50 0 0 chr1 102777362 102777917 -94417515 + L1Md_F2 LINE L1 6016 6570 -12 4 1369 485 245 104 3 chr1 102778188 102778337 -94417095 + B3A SINE B2 2 170 -46 4 1369 198 91 0 0 chr1 102778565 102778598 -94416834 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1369 302 196 11 0 chr1 102778798 102778890 -94416542 + GA-rich Low_complexity Low_complexity 2 94 0 4 1369 618 133 0 0 chr1 102779434 102779547 -94415885 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 1369 412 306 184 34 chr1 102779619 102779825 -94415607 - RMER15 LTR ERVL -64 511 275 4 1369 1038 32 0 37 chr1 102780007 102780168 -94415264 + (TTC)n Simple_repeat Simple_repeat 3 157 0 4 1369 465 50 0 0 chr1 102780168 102780228 -94415204 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1369 227 279 33 0 chr1 102780231 102780292 -94415140 + CT-rich Low_complexity Low_complexity 4 66 0 4 1369 913 295 49 19 chr1 102780643 102781009 -94414423 + MTEb LTR MaLR 3 379 0 4 1369 4381 110 25 0 chr1 102781132 102781760 -94413672 - L1_Mus1 LINE L1 0 6567 5924 4 1369 1616 63 0 0 chr1 102781760 102781965 -94413467 + L1_Mus1 LINE L1 5702 5906 -661 4 1369 3134 129 38 0 chr1 102783167 102783670 -94411762 - L1_Mus3 LINE L1 -4 6634 6113 4 1369 31 26 0 0 chr1 102783670 102783708 -94411724 + AT_rich Low_complexity Low_complexity 1 38 0 4 1369 269 266 83 83 chr1 102783720 102783888 -94411544 + RLTR26 LTR ERVK 249 416 -226 4 1369 192 167 0 0 chr1 102784210 102784258 -94411174 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1369 663 13 0 0 chr1 102784271 102784347 -94411085 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1369 1210 82 0 12 chr1 102784366 102784539 -94410893 - L1_Mus1 LINE L1 -1 6566 6396 4 1369 239 356 106 13 chr1 102784987 102785138 -94410294 + MLT1D LTR MaLR 252 416 -89 4 1369 2394 163 84 42 chr1 102785420 102785920 -94409512 + RMER16 LTR ERVK 13 533 0 4 1369 26 0 0 0 chr1 102786967 102786993 -94408439 + AT_rich Low_complexity Low_complexity 1 26 0 4 1369 342 325 62 39 chr1 102787010 102787189 -94408243 - B3A SINE B2 -14 184 2 4 1369 616 338 64 50 chr1 102787792 102788134 -94407298 + MT2A LTR ERVL 187 533 0 4 1369 679 311 49 7 chr1 102789239 102789527 -94405905 - MT2A LTR ERVL -4 529 230 4 1369 1511 224 16 59 chr1 102789690 102790086 -94405346 - ORR1B1 LTR MaLR -65 329 1 4 1369 353 278 42 25 chr1 102790115 102790233 -94405199 + MER90 LTR ERV1 2 121 -454 4 1369 2835 57 19 0 chr1 102790854 102791223 -94404209 - L1Md_F2 LINE L1 0 6582 6207 4 1369 399 228 53 46 chr1 102791260 102791412 -94404020 + L1MA5A LINE L1 5706 5858 -439 4 1369 237 333 46 61 chr1 102791877 102792008 -94403424 - ORR1E LTR MaLR -222 137 9 4 1369 2007 205 33 68 chr1 102792246 102792661 -94402771 + L1VL4 LINE L1 409 822 -5480 4 1369 311 44 22 0 chr1 102792661 102792706 -94402726 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 1369 2007 205 33 68 chr1 102792706 102792739 -94402693 + L1VL4 LINE L1 823 846 -5456 4 1369 528 30 0 0 chr1 102792739 102792805 -94402627 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1369 4112 188 30 14 chr1 102792805 102793770 -94401662 + L1VL4 LINE L1 847 1817 -1742 4 1369 5862 162 162 19 chr1 102793760 102795363 -94400069 + L1Md_F2 LINE L1 4048 5925 -657 4 1369 422 297 0 26 chr1 102795532 102795646 -94399786 - MTE2b LTR MaLR -268 111 1 4 1369 329 113 48 0 chr1 102795993 102796055 -94399377 + GA-rich Low_complexity Low_complexity 6 70 0 4 1369 1146 147 17 0 chr1 102796421 102796598 -94398834 - B2_Mm2 SINE B2 -15 180 1 4 1369 1143 318 25 8 chr1 102797048 102797413 -94398019 + MTEb LTR MaLR 3 373 -6 4 1369 231 36 0 0 chr1 102797729 102797757 -94397675 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1369 334 333 9 9 chr1 102797759 102797868 -94397564 - B4A SINE B4 -18 274 166 4 1369 264 30 0 0 chr1 102799117 102799150 -94396282 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1369 1088 293 57 25 chr1 102799976 102800256 -94395176 - B4 SINE B4 0 292 4 4 1369 407 287 114 11 chr1 102800326 102800502 -94394930 - ERVL-B4-int LTR ERVL -1271 4443 4250 4 1369 685 300 99 62 chr1 102801001 102801374 -94394058 - RMER13A LTR ERVK -460 400 14 4 1369 1353 35 0 0 chr1 102801840 102802010 -94393422 + L1Md_F3 LINE L1 6401 6570 -14 4 1369 877 292 92 15 chr1 102802337 102802598 -94392834 - MTEb LTR MaLR -1 378 98 4 1369 621 0 0 0 chr1 102803115 102803184 -94392248 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1369 592 323 70 37 chr1 102803771 102804044 -94391388 - B4A SINE B4 -5 287 6 4 1369 519 31 0 0 chr1 102804551 102804616 -94390816 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1369 403 60 15 15 chr1 102804616 102804683 -94390749 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1369 1367 281 25 69 chr1 102804742 102805220 -94390212 + Lx6 LINE L1 6977 7433 -27 4 1369 225 0 0 0 chr1 102805232 102805257 -94390175 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1369 216 345 17 0 chr1 102805727 102805785 -94389647 - ID4_ SINE ID -13 70 12 4 1369 2968 160 8 0 chr1 102806355 102806856 -94388576 + Lx2 LINE L1 6491 6995 -2 4 1369 324 0 0 0 chr1 102807179 102807215 -94388217 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1369 423 0 0 0 chr1 102807215 102807261 -94388171 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1369 391 392 30 7 chr1 102807261 102807514 -94387918 - Lx8 LINE L1 -212 7432 7097 4 1369 637 269 141 34 chr1 102807701 102807963 -94387469 + RMER15 LTR ERVL 279 568 -7 4 1369 1099 88 0 0 chr1 102808564 102808711 -94386721 + B1_Mm SINE Alu 1 147 0 4 1369 252 0 0 0 chr1 102808711 102808739 -94386693 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1369 201 74 0 0 chr1 102810005 102810032 -94385400 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1369 1151 151 5 5 chr1 102810053 102810240 -94385192 + B2_Mm2 SINE B2 2 188 -7 4 1369 257 233 242 0 chr1 102810719 102810839 -94384593 - B2_Mm2 SINE B2 -19 176 28 4 1369 300 326 43 101 chr1 102810905 102810935 -94384497 - B4 SINE B4 0 292 266 4 1369 4252 146 118 78 chr1 102810935 102811917 -94383515 - RLTR13D2 LTR ERVK -2 1021 1 4 1369 300 326 43 101 chr1 102811917 102812094 -94383338 - B4 SINE B4 -27 265 97 4 1369 4998 228 93 40 chr1 102812096 102813155 -94382277 + Lx7 LINE L1 6197 7295 -401 4 1369 495 0 0 0 chr1 102813155 102813210 -94382222 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 4 1369 4998 228 93 40 chr1 102813210 102813574 -94381858 + Lx7 LINE L1 7296 7696 0 4 1369 186 43 0 0 chr1 102813580 102813603 -94381829 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1369 574 245 103 6 chr1 102814139 102814295 -94381137 - MTC LTR MaLR 0 421 251 4 1369 420 20 0 0 chr1 102814296 102814345 -94381087 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1369 274 107 36 0 chr1 102814345 102814401 -94381031 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 4 1369 962 153 0 11 chr1 102814420 102814598 -94380834 + CT-rich Low_complexity Low_complexity 2 177 0 4 1369 821 204 0 0 chr1 102814632 102814779 -94380653 - B1_Mus1 SINE Alu 0 148 2 4 1369 818 235 77 0 chr1 102814780 102814963 -94380469 - MTC LTR MaLR -213 208 12 4 1369 908 270 90 75 chr1 102815034 102815499 -94379933 - Lx8 LINE L1 -4 7469 6998 4 1369 240 374 29 30 chr1 102816120 102816306 -94379126 + B4 SINE B4 6 188 -104 4 1369 308 318 11 0 chr1 102817383 102817471 -94377961 + B4A SINE B4 8 96 -196 4 1369 312 224 169 60 chr1 102817477 102817643 -94377789 + Lx6 LINE L1 7275 7458 -2 4 1369 238 182 15 15 chr1 102817782 102817849 -94377583 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1369 3974 56 8 10 chr1 102818103 102818622 -94376810 + L1Md_F2 LINE L1 6065 6582 0 4 1369 752 189 41 61 chr1 102818647 102818836 -94376596 + B2_Mm2 SINE B2 2 187 -8 4 1369 237 33 0 0 chr1 102818836 102818866 -94376566 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1369 1140 75 0 0 chr1 102818882 102819029 -94376403 + B1_Mm SINE Alu 1 147 0 4 1369 186 258 0 0 chr1 102819697 102819759 -94375673 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1369 717 375 28 18 chr1 102821092 102821377 -94374055 - B4 SINE B4 0 292 5 4 1369 435 117 17 43 chr1 102821415 102821531 -94373901 + CT-rich Low_complexity Low_complexity 2 114 0 4 1369 553 305 73 5 chr1 102821750 102821941 -94373491 + B4A SINE B4 21 224 -68 4 1369 557 312 21 7 chr1 102821950 102822095 -94373337 + B3 SINE B2 9 155 -61 4 1369 266 160 0 0 chr1 102822218 102822268 -94373164 + B3 SINE B2 157 206 -10 4 1369 232 314 0 28 chr1 102822290 102822362 -94373070 + B4 SINE B4 215 284 -8 4 1369 1838 159 6 6 chr1 102822383 102822694 -94372738 - RLTR10E LTR ERVK 0 311 1 4 1369 212 361 39 63 chr1 102823365 102823492 -94371940 + B3A SINE B2 57 180 -18 5 1369 23 33 0 0 chr1 102823509 102823539 -94371893 + AT_rich Low_complexity Low_complexity 1 30 0 5 1369 310 291 37 121 chr1 102823565 102823739 -94371693 + B4A SINE B4 15 174 -118 5 1369 26 0 0 0 chr1 102824271 102824297 -94371135 + AT_rich Low_complexity Low_complexity 1 26 0 5 1369 480 59 0 0 chr1 102824413 102824481 -94370951 + (TGG)n Simple_repeat Simple_repeat 1 68 0 5 1369 712 343 24 24 chr1 102824483 102824773 -94370659 - B4A SINE B4 0 292 3 5 1369 248 279 0 56 chr1 102825058 102825130 -94370302 + L2b LINE L2 3303 3370 -5 5 1369 569 291 140 52 chr1 102825578 102825780 -94369652 + B4A SINE B4 1 225 -67 5 1369 1067 219 88 55 chr1 102825780 102826177 -94369255 + RMER17C LTR ERVK 1 410 0 5 1369 569 291 140 52 chr1 102826177 102826224 -94369208 + B4A SINE B4 226 272 -20 5 1369 198 0 0 0 chr1 102826365 102826387 -94369045 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1369 295 336 67 33 chr1 102826552 102826672 -94368760 + B4A SINE B4 77 200 -92 5 1369 24 0 0 0 chr1 102826772 102826796 -94368636 + AT_rich Low_complexity Low_complexity 1 24 0 5 1369 966 290 97 26 chr1 102826864 102827204 -94368228 - MTE2b LTR MaLR -7 372 9 5 1369 204 262 15 15 chr1 102827849 102827915 -94367517 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 5 1369 359 20 41 0 chr1 102827941 102827990 -94367442 + IAPEY2_LTR LTR ERVK 307 357 0 5 1369 404 82 16 0 chr1 102828465 102828526 -94366906 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 5 1369 258 215 57 123 chr1 102828526 102828632 -94366800 + Lx8 LINE L1 6685 6783 -690 5 1369 666 37 0 0 chr1 102828743 102828824 -94366608 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 5 1369 187 262 88 80 chr1 102828977 102829114 -94366318 + MIRb SINE MIR 74 211 -57 5 1369 261 273 37 49 chr1 102830568 102830649 -94364783 + B1F SINE Alu 18 97 -52 5 1369 4450 96 0 16 chr1 102831138 102831676 -94363756 + L1_Mus1 LINE L1 5955 6488 -79 5 1369 3379 30 2 0 chr1 102831676 102832071 -94363361 + MTA_Mm LTR MaLR 1 396 0 5 1369 4450 96 0 16 chr1 102832071 102832171 -94363261 + L1_Mus1 LINE L1 6489 6567 0 5 1369 321 106 0 0 chr1 102832172 102832219 -94363213 - L1_Mur2 LINE L1 -3512 2365 2319 5 1369 4287 176 15 1 chr1 102832458 102833248 -94362184 + RLTR22_Mur LTR ERVK 1 801 -1047 5 1369 384 312 48 82 chr1 102833455 102833661 -94361771 + RMER12 LTR ERVK 1104 1302 -20 5 1369 2970 280 55 10 chr1 102833958 102834853 -94360579 - Lx2B LINE L1 -10 6990 6056 5 1369 4612 203 63 2 chr1 102834850 102836011 -94359421 + Lx2B LINE L1 4836 6056 -944 5 1369 214 284 19 10 chr1 102836583 102836686 -94358746 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1369 540 56 0 0 chr1 102836700 102836772 -94358660 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1369 234 302 0 85 chr1 102836920 102837014 -94358418 + PB1D10 SINE Alu 26 111 -6 5 1369 196 366 14 0 chr1 102837907 102837978 -94357454 - L2b LINE L2 -1 3374 3303 5 1369 285 339 53 63 chr1 102838147 102838336 -94357096 + Lx8 LINE L1 7194 7380 -93 5 1369 309 324 57 0 chr1 102838512 102838617 -94356815 + B1F1 SINE Alu 1 111 -38 5 1369 1982 42 0 0 chr1 102838638 102838874 -94356558 - L1Md_F2 LINE L1 -287 5596 5361 5 1369 7986 47 3 1 chr1 102838889 102839879 -94355553 + L1Md_F2 LINE L1 5587 6578 -4 5 1369 528 354 58 5 chr1 102839879 102840086 -94355346 - MTEb LTR MaLR -161 218 1 5 1369 677 292 199 0 chr1 102840550 102840851 -94354581 + Lx8 LINE L1 6972 7332 -141 5 1369 9006 2 0 0 chr1 102840850 102842214 -94353218 - L1Md_A LINE L1 0 6582 5219 5 1369 774 284 149 6 chr1 102842694 102842848 -94352584 - MTE2a LTR MaLR -3 376 180 5 1369 339 25 0 0 chr1 102842848 102842888 -94352544 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1369 774 284 149 6 chr1 102842888 102843062 -94352370 - MTE2a LTR MaLR -200 179 1 5 1369 375 370 67 32 chr1 102843529 102843814 -94351618 + B4 SINE B4 6 276 -16 5 1369 1773 212 11 27 chr1 102843878 102844251 -94351181 + ORR1B1 LTR MaLR 28 394 0 5 1369 188 243 0 0 chr1 102844902 102844939 -94350493 + MIR SINE MIR 109 145 -117 5 1369 413 330 0 0 chr1 102845570 102845670 -94349762 + RSINE1 SINE B4 42 141 -24 5 1369 183 42 0 0 chr1 102845679 102845703 -94349729 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1369 369 58 0 0 chr1 102846183 102846235 -94349197 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1369 668 274 16 16 chr1 102847739 102847932 -94347500 - Tigger5 DNA MER2_type -68 2338 2146 5 1369 668 346 14 10 chr1 102847981 102848188 -94347244 - B3 SINE B2 -5 211 4 5 1369 1031 78 43 0 chr1 102848245 102848386 -94347046 - B1_Mm SINE Alu 0 147 1 5 1369 32 0 0 0 chr1 102848622 102848654 -94346778 + AT_rich Low_complexity Low_complexity 1 32 0 5 1369 554 311 0 68 chr1 102849126 102849302 -94346130 - B4 SINE B4 -128 164 1 5 1369 1629 99 0 0 chr1 102849305 102849528 -94345904 + RMER17A LTR ERVK 1 223 -528 5 1369 2908 54 3 0 chr1 102849528 102849897 -94345535 - MTA_Mm LTR MaLR 0 396 27 5 1369 2081 167 29 40 chr1 102849866 102850321 -94345111 + RMER17A LTR ERVK 287 736 -15 5 1369 527 236 160 29 chr1 102850414 102850520 -94344912 - L1M4 LINE L1 -599 5575 5476 5 1369 760 306 81 23 chr1 102850520 102850868 -94344564 - ORR1D2 LTR MaLR 0 370 3 5 1369 527 258 126 23 chr1 102850868 102851226 -94344206 - L1M4 LINE L1 -699 5475 5057 5 1369 192 97 0 0 chr1 102851231 102851262 -94344170 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1369 202 266 31 0 chr1 102851262 102851326 -94344106 + (TATG)n Simple_repeat Simple_repeat 2 67 0 5 1369 269 358 89 73 chr1 102851347 102851594 -94343838 - B4 SINE B4 -10 282 32 5 1369 295 321 26 66 chr1 102851606 102851824 -94343608 - L1M4 LINE L1 -1154 4992 4784 5 1369 2237 82 0 0 chr1 102851903 102852194 -94343238 + L1_Mus1 LINE L1 5945 6235 -332 5 1369 2196 84 9 13 chr1 102852194 102852509 -94342923 - L1Md_F2 LINE L1 -2 6580 6267 5 1369 3304 92 2 4 chr1 102852499 102852960 -94342472 + L1_Mus1 LINE L1 6107 6566 -1 5 1369 627 341 58 15 chr1 102853537 102853811 -94341621 + RMER15 LTR ERVL 275 560 -15 5 1369 786 325 55 65 chr1 102853836 102854389 -94341043 - MTE2a LTR MaLR -24 395 8 5 1369 22 35 0 0 chr1 102854455 102854484 -94340948 + AT_rich Low_complexity Low_complexity 1 29 0 5 1369 222 307 20 0 chr1 102854484 102854585 -94340847 + (TATG)n Simple_repeat Simple_repeat 4 106 0 5 1369 429 354 73 28 chr1 102854598 102854816 -94340616 - B4A SINE B4 0 292 65 5 1369 949 242 79 37 chr1 102854879 102855257 -94340175 + L1MA6 LINE L1 5706 6099 -201 5 1369 725 61 0 10 chr1 102855965 102856065 -94339367 + (TTTTC)n Simple_repeat Simple_repeat 2 100 0 5 1369 225 270 36 9 chr1 102856092 102856204 -94339228 + T-rich Low_complexity Low_complexity 2 116 0 5 1369 351 380 6 79 chr1 102856228 102856405 -94339027 - ID_B1 SINE B4 -32 192 29 5 1369 24 0 0 0 chr1 102856503 102856527 -94338905 + AT_rich Low_complexity Low_complexity 1 24 0 5 1369 447 19 0 0 chr1 102856614 102856666 -94338766 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1369 360 281 0 12 chr1 102856752 102856835 -94338597 - B3A SINE B2 -115 83 2 5 1369 557 311 40 154 chr1 102856987 102857214 -94338218 + MTE2a LTR MaLR 57 272 -107 5 1369 2877 52 0 0 chr1 102857214 102857560 -94337872 - ORR1A0 LTR MaLR 0 346 1 5 1369 557 311 40 154 chr1 102857560 102857682 -94337750 + MTE2a LTR MaLR 273 366 -13 5 1369 22 70 0 0 chr1 102858107 102858150 -94337282 + AT_rich Low_complexity Low_complexity 1 43 0 5 1369 519 203 57 8 chr1 102858150 102858274 -94337158 - RMER1B Other Other -12 1054 925 5 1369 511 286 147 48 chr1 102858587 102858818 -94336614 - Lx6 LINE L1 -27 7433 7180 5 1369 23 0 0 0 chr1 102858841 102858864 -94336568 + AT_rich Low_complexity Low_complexity 1 23 0 5 1369 2600 170 25 2 chr1 102858873 102859322 -94336110 - Lx LINE L1 -8 6646 6188 5 1369 8335 173 33 14 chr1 102859324 102861001 -94334431 - L1_Mur1 LINE L1 -1446 4440 2731 5 1369 38 0 0 0 chr1 102861222 102861260 -94334172 + AT_rich Low_complexity Low_complexity 1 38 0 5 1369 420 317 6 84 chr1 102861471 102861650 -94333782 - RMER30 DNA MER1_type -6 196 32 5 1369 302 298 39 0 chr1 102861656 102861760 -94333672 + (TATATG)n Simple_repeat Simple_repeat 6 113 0 5 1369 303 338 62 14 chr1 102861767 102861911 -94333521 - B4A SINE B4 -4 288 138 5 1369 249 318 12 0 chr1 102863042 102863127 -94332305 + (TATG)n Simple_repeat Simple_repeat 3 88 0 5 1369 224 260 0 0 chr1 102863296 102863346 -94332086 - B3 SINE B2 -166 50 1 5 1369 565 301 62 0 chr1 102863346 102863519 -94331913 - B4A SINE B4 -62 230 47 5 1369 579 142 0 0 chr1 102864196 102864316 -94331116 + (TC)n Simple_repeat Simple_repeat 1 120 0 5 1369 399 83 0 0 chr1 102864316 102864376 -94331056 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1369 978 105 0 0 chr1 102864949 102865121 -94330311 + (TC)n Simple_repeat Simple_repeat 2 173 0 5 1369 284 362 7 66 chr1 102865268 102865404 -94330028 - B4A SINE B4 -156 136 9 5 1369 201 164 0 83 chr1 102866098 102866158 -94329274 + T-rich Low_complexity Low_complexity 2 56 0 5 1369 355 391 65 14 chr1 102866162 102866455 -94328977 - MLT1A0 LTR MaLR -52 313 6 5 1369 226 170 0 19 chr1 102867338 102867392 -94328040 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 5 1369 515 325 50 23 chr1 102867645 102867895 -94327537 + MER34A LTR ERV1 25 281 -290 5 1369 705 282 143 73 chr1 102867895 102868296 -94327136 + MTD LTR MaLR 1 383 -36 5 1369 1562 278 93 49 chr1 102868412 102869090 -94326342 + RLTR40 LTR ERVK 19 727 -90 5 1369 1731 275 10 0 chr1 102869090 102869497 -94325935 + MTD LTR MaLR 1 411 -8 5 1369 995 312 15 73 chr1 102870610 102871040 -94324392 + MTE2a LTR MaLR 1 405 -14 5 1369 454 340 52 0 chr1 102871642 102871715 -94323717 + ID SINE ID 1 81 -143 5 1369 316 363 26 26 chr1 102871715 102871831 -94323601 + PB1D10 SINE Alu 1 116 -1 5 1369 3566 133 57 3 chr1 102872015 102872610 -94322822 + Lx2 LINE L1 6370 6996 -1 5 1369 423 0 0 0 chr1 102872632 102872679 -94322753 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 1369 212 189 0 0 chr1 102872697 102872734 -94322698 + A-rich Low_complexity Low_complexity 1 37 0 6 1369 275 151 11 55 chr1 102873852 102873943 -94321489 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1369 228 293 77 48 chr1 102875305 102875409 -94320023 - BC1_Mm scRNA scRNA -45 107 1 6 1369 2493 166 127 41 chr1 102875427 102876175 -94319257 - RLTR13D3 LTR ERVK 0 1114 1 6 1369 191 327 39 0 chr1 102876206 102876258 -94319174 - MIR SINE MIR -169 93 40 6 1369 234 91 0 0 chr1 102876912 102876945 -94318487 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1369 39855 19 1 6 chr1 102877092 102883509 -94311923 - L1Md_A LINE L1 -1 6581 200 6 1369 1019 137 6 0 chr1 102883767 102883942 -94311490 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 6 1369 291 114 0 0 chr1 102883942 102883986 -94311446 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 6 1369 613 344 28 23 chr1 102884025 102884242 -94311190 - B4 SINE B4 -64 228 11 6 1369 8103 155 12 2 chr1 102884398 102885155 -94310277 - Lx LINE L1 -573 6081 5320 6 1369 207 0 0 0 chr1 102885155 102885178 -94310254 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1369 8103 173 31 6 chr1 102885178 102886186 -94309246 - Lx LINE L1 -564 5319 4276 6 1369 21285 15 0 1 chr1 102886182 102889400 -94306032 - L1Md_A LINE L1 -2 6580 3364 6 1369 8818 28 7 19 chr1 102889389 102891339 -94304093 - L1Md_A LINE L1 -3747 2136 214 6 171 8030 166 10 12 chr1 102891340 102892892 -94302540 - L1_Mur1 LINE L1 -1598 4288 2739 6 1370 1720 315 70 66 chr1 102892936 102893999 -94301433 - Lx9 LINE L1 -419 7225 6021 6 1370 216 355 75 56 chr1 102894103 102894264 -94301168 + MIRb SINE MIR 70 233 -35 6 1370 2998 200 51 21 chr1 102894436 102895058 -94300374 + RLTR26 LTR ERVK 1 641 -1 6 1370 504 288 42 83 chr1 102895058 102895239 -94300193 - B4A SINE B4 -109 183 11 6 1370 282 237 0 38 chr1 102895170 102895249 -94300183 - B3A SINE B2 -121 77 2 6 1370 529 111 0 0 chr1 102895273 102895345 -94300087 + L1Md_F2 LINE L1 5515 5586 -297 6 1370 7737 61 1 7 chr1 102895345 102896347 -94299085 + L1Md_F2 LINE L1 5587 6582 0 6 1370 269 287 37 0 chr1 102896625 102896733 -94298699 - L1MA5A LINE L1 -372 5925 5814 6 1370 344 88 18 0 chr1 102896974 102897031 -94298401 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1370 180 0 0 0 chr1 102897150 102897170 -94298262 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1370 318 169 0 0 chr1 102897731 102897796 -94297636 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1370 310 348 0 0 chr1 102898257 102898346 -94297086 - B1F2 SINE Alu -51 98 10 6 1370 327 299 42 49 chr1 102898351 102898495 -94296937 + MTD LTR MaLR 1 143 -276 6 1370 2846 217 54 83 chr1 102898495 102899525 -94295907 - Lx5 LINE L1 -711 6339 5314 6 1370 735 183 113 0 chr1 102899525 102899667 -94295765 - B3 SINE B2 -57 159 2 6 1370 2846 217 54 83 chr1 102899667 102900325 -94295107 - Lx5 LINE L1 -711 5313 4657 6 1370 631 200 128 4 chr1 102900328 102900486 -94294946 - MTD LTR MaLR 0 421 247 6 1370 286 272 111 8 chr1 102900512 102900638 -94294794 - MTC-int LTR MaLR -4 1254 1116 6 1370 711 222 12 0 chr1 102900824 102900991 -94294441 + L1_Mur2 LINE L1 4463 4631 -1246 6 1370 429 320 11 47 chr1 102901008 102901198 -94294234 - MTC-int LTR MaLR -200 1058 876 6 1370 444 259 122 12 chr1 102901189 102901361 -94294071 - MTD LTR MaLR -8 411 221 6 1370 23 33 0 0 chr1 102901384 102901414 -94294018 + AT_rich Low_complexity Low_complexity 1 30 0 6 1370 186 103 0 0 chr1 102901660 102901689 -94293743 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1370 784 287 87 27 chr1 102901693 102902045 -94293387 + MTD LTR MaLR 22 419 0 6 1370 296 326 33 11 chr1 102902045 102902133 -94293299 - MTD LTR MaLR -289 130 41 6 1370 264 213 0 0 chr1 102902190 102902251 -94293181 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 1370 1987 101 6 57 chr1 102902277 102902593 -94292839 - L1_Mus2 LINE L1 -1 6565 6266 6 1370 306 261 72 0 chr1 102903054 102903123 -94292309 + B4A SINE B4 1 74 -218 6 1370 219 88 0 0 chr1 102904280 102904314 -94291118 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1370 246 421 88 6 chr1 102904441 102904601 -94290831 - B4A SINE B4 -118 174 2 6 1370 1026 246 5 0 chr1 102904851 102905075 -94290357 - URR1B DNA MER1_type 0 225 1 6 1370 225 338 45 0 chr1 102905506 102905663 -94289769 + L1MA7 LINE L1 6123 6286 -5 6 1370 23 0 0 0 chr1 102905944 102905967 -94289465 + AT_rich Low_complexity Low_complexity 1 23 0 6 1370 528 16 0 0 chr1 102906024 102906085 -94289347 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1370 585 309 6 72 chr1 102906657 102906838 -94288594 + B4A SINE B4 2 170 -122 6 1370 459 0 0 0 chr1 102907513 102907564 -94287868 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 1370 941 104 0 7 chr1 102907564 102907699 -94287733 - B1_Mus2 SINE Alu -12 135 2 6 1370 180 200 0 0 chr1 102907862 102907897 -94287535 - L3 LINE CR1 -2274 2215 2181 6 1370 318 50 0 0 chr1 102908341 102908381 -94287051 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1370 27 49 0 0 chr1 102908494 102908535 -94286897 + AT_rich Low_complexity Low_complexity 1 41 0 6 1370 306 73 0 0 chr1 102908608 102908649 -94286783 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1370 337 379 57 4 chr1 102908844 102909109 -94286323 - B4 SINE B4 -12 280 2 6 1370 4885 147 14 21 chr1 102909558 102910402 -94285030 - Lx LINE L1 -1 6653 5816 6 1370 9797 164 10 18 chr1 102910404 102912300 -94283132 + L1_Mm LINE L1 3197 5077 -806 6 1370 310 88 132 0 chr1 102912302 102912370 -94283062 + L1_Mus3 LINE L1 6558 6634 -4 6 1370 242 354 140 67 chr1 102912430 102912705 -94282727 + MTD LTR MaLR 1 308 -111 6 1370 1056 90 7 0 chr1 102912705 102912849 -94282583 - B1_Mus2 SINE Alu -1 146 2 6 1370 242 354 140 67 chr1 102912849 102912945 -94282487 + MTD LTR MaLR 309 399 -20 6 1370 316 285 61 20 chr1 102913115 102913262 -94282170 + L1M4 LINE L1 2432 2584 -3562 6 1370 748 263 154 2 chr1 102913364 102913676 -94281756 - MTD LTR MaLR -14 407 26 6 1370 444 116 0 0 chr1 102913677 102913763 -94281669 + (A)n Simple_repeat Simple_repeat 1 86 0 6 1370 22 0 0 0 chr1 102913939 102913961 -94281471 + AT_rich Low_complexity Low_complexity 1 22 0 6 1370 231 286 87 19 chr1 102914016 102914223 -94281209 + L1M4 LINE L1 3273 3493 -2653 6 1370 748 290 106 20 chr1 102914279 102914817 -94280615 + L1M4 LINE L1 3627 4210 -1936 6 1370 465 327 58 35 chr1 102915272 102915348 -94280084 + B3A SINE B2 4 83 -115 6 1370 1996 154 6 0 chr1 102915348 102915673 -94279759 + ORR1A2 LTR MaLR 1 327 0 6 1370 465 303 45 121 chr1 102915673 102915795 -94279637 + B3A SINE B2 73 187 -8 6 1370 249 345 26 0 chr1 102915801 102915914 -94279518 + L1MD LINE L1 4715 4830 -1316 6 1370 499 299 47 16 chr1 102916409 102916538 -94278894 - ETnERV2-int LTR ERVK -204 7202 7070 6 1370 392 341 0 24 chr1 102916544 102916670 -94278762 - B3 SINE B2 -93 123 1 6 1370 399 326 80 40 chr1 102917088 102917312 -94278120 - ORR1E LTR MaLR -6 353 121 6 1370 646 87 0 10 chr1 102917444 102917548 -94277884 - L1_Mus2 LINE L1 -2 6564 6462 6 1370 1324 72 0 89 chr1 102917664 102917877 -94277555 - L1_Mus2 LINE L1 -2 6564 6371 6 1370 267 353 35 0 chr1 102917898 102917983 -94277449 - ORR1E LTR MaLR -267 92 5 6 1370 330 377 113 42 chr1 102917988 102918439 -94276993 + MLT1D LTR MaLR 21 503 -2 6 1370 291 336 8 70 chr1 102918442 102918570 -94276862 + MLT1D-int LTR MaLR 2 121 -1368 6 1370 391 249 140 56 chr1 102918610 102918808 -94276624 + B4 SINE B4 11 238 -54 6 1370 215 191 16 0 chr1 102918825 102918888 -94276544 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 6 1370 574 368 40 91 chr1 102918901 102919528 -94275904 + MLT1D-int LTR MaLR 149 743 -628 6 1370 256 357 78 20 chr1 102920031 102920179 -94275253 - MIR SINE MIR -70 192 38 6 1370 387 41 0 0 chr1 102921087 102921136 -94274296 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1370 582 311 18 24 chr1 102921150 102921315 -94274117 - B3A SINE B2 -34 164 1 6 1370 314 314 11 11 chr1 102921902 102921989 -94273443 + B4 SINE B4 3 89 -203 6 1370 314 280 140 0 chr1 102922034 102922127 -94273305 + B4 SINE B4 183 288 -4 6 1370 3576 222 30 6 chr1 102922370 102923157 -94272275 - Lx2B LINE L1 -13 6987 6182 6 1370 234 0 0 0 chr1 102923576 102923602 -94271830 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1370 210 37 0 0 chr1 102924254 102924281 -94271151 + (CGATA)n Simple_repeat Simple_repeat 4 30 0 6 1370 663 80 1 0 chr1 102924807 102924900 -94270532 - L1_Mus1 LINE L1 -341 6243 6144 6 1370 867 40 0 46 chr1 102924912 102925042 -94270390 - L1Md_F3 LINE L1 -12 6572 6449 6 1370 264 32 0 0 chr1 102925042 102925073 -94270359 - L1Md_F3 LINE L1 -416 6166 6136 6 1370 339 47 0 0 chr1 102925073 102925116 -94270316 + L1_Mus1 LINE L1 6292 6334 -233 6 1370 297 252 156 30 chr1 102925220 102925355 -94270077 - ORR1D1 LTR MaLR -13 361 210 6 1370 2823 219 28 9 chr1 102925392 102925958 -94269474 - RMER13A LTR ERVK -275 585 9 6 1370 202 200 23 23 chr1 102926019 102926106 -94269326 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 6 1370 779 98 0 8 chr1 102926133 102926257 -94269175 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 6 1370 693 271 21 4 chr1 102926272 102926477 -94268955 - ORR1D1 LTR MaLR -179 199 1 6 1370 272 304 0 0 chr1 102926488 102926557 -94268875 - B4 SINE B4 -222 70 2 6 1370 348 104 119 0 chr1 102926936 102927003 -94268429 + Lx2 LINE L1 6921 6995 -2 6 1370 331 286 0 84 chr1 102927081 102927173 -94268259 - RMER30 DNA MER1_type 0 202 120 6 1370 6525 40 2 0 chr1 102927173 102927958 -94267474 - L1Md_F2 LINE L1 -12 6570 5784 6 1370 331 286 0 84 chr1 102927958 102927972 -94267460 - RMER30 DNA MER1_type -83 119 106 6 1370 264 316 95 42 chr1 102928035 102928276 -94267156 - Lx9 LINE L1 -705 6939 6686 6 1370 317 330 40 0 chr1 102928967 102929067 -94266365 - Lx8 LINE L1 -174 7299 7196 6 1370 378 0 0 0 chr1 102929138 102929180 -94266252 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1370 615 294 66 25 chr1 102929180 102929424 -94266008 - Lx8 LINE L1 -378 7095 6842 6 1370 25 0 0 0 chr1 102929816 102929841 -94265591 + AT_rich Low_complexity Low_complexity 1 25 0 6 1370 561 331 28 0 chr1 102929893 102930074 -94265358 - MTE2b LTR MaLR 0 379 194 6 1370 422 323 25 13 chr1 102930060 102930217 -94265215 + MTE2a LTR MaLR 32 190 -189 6 1370 340 284 82 71 chr1 102930741 102930923 -94264509 + RLTR23 LTR ERV1 247 430 0 6 1370 553 325 5 69 chr1 102931107 102931309 -94264123 + B3 SINE B2 3 191 -25 6 1370 369 75 0 0 chr1 102931567 102931620 -94263812 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1370 790 294 77 30 chr1 102931839 102931894 -94263538 - RMER5 LTR ERV1 -120 414 357 7 1370 3633 127 148 32 chr1 102931894 102932244 -94263188 + RMER17D2 LTR ERVK 1 392 -417 7 1370 1337 36 0 6 chr1 102932244 102932412 -94263020 + (TCTCC)n Simple_repeat Simple_repeat 3 169 0 7 1370 3633 127 148 32 chr1 102932412 102932786 -94262646 + RMER17D2 LTR ERVK 393 809 0 7 1370 790 294 77 30 chr1 102932786 102933095 -94262337 - RMER5 LTR ERV1 -178 356 34 7 1370 468 356 81 20 chr1 102933994 102934192 -94261240 + B4 SINE B4 2 211 -81 7 1370 473 66 0 38 chr1 102934245 102934324 -94261108 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1370 21 0 0 0 chr1 102934495 102934516 -94260916 + AT_rich Low_complexity Low_complexity 1 21 0 7 1370 251 213 99 13 chr1 102934953 102935105 -94260327 - RMER17D2 LTR ERVK -272 537 373 7 1370 2652 77 3 0 chr1 102935470 102935819 -94259613 - L1_Mm LINE L1 -299 5584 5235 7 1370 3110 78 41 5 chr1 102935821 102936258 -94259174 + L1Md_F2 LINE L1 6130 6582 0 7 1370 675 362 28 6 chr1 102936288 102936646 -94258786 - RodERV21-int LTR ERV1 -246 4745 4380 7 1370 38250 8 1 0 chr1 102936671 102941845 -94253587 + L1Md_A LINE L1 409 5586 -297 7 1370 8986 4 0 0 chr1 102941845 102942841 -94252591 + L1Md_A LINE L1 5587 6582 0 7 1370 1834 341 65 51 chr1 102942873 102944238 -94251194 - RodERV21-int LTR ERV1 -665 4326 2944 7 1370 7712 47 4 0 chr1 102944238 102945177 -94250255 + L1Md_F2 LINE L1 5627 6569 -13 7 1370 1504 342 61 60 chr1 102945177 102945418 -94250014 - RodERV21-int LTR ERV1 -2048 2943 2718 7 1370 331 238 27 27 chr1 102945642 102945857 -94249575 - RLTR6-int LTR ERV1 -2743 5035 4794 7 1370 691 145 8 8 chr1 102946100 102946218 -94249214 + RMER17A2 LTR ERVK 1 118 -788 7 1370 1123 166 0 15 chr1 102946193 102946389 -94249043 + RMER17A2 LTR ERVK 714 906 0 7 1370 252 333 8 8 chr1 102946617 102946744 -94248688 - RLTR6-int LTR ERV1 -1987 5104 4978 7 1370 180 0 0 0 chr1 102947155 102947175 -94248257 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1370 3621 276 14 41 chr1 102947185 102948266 -94247166 - RodERV21-int LTR ERV1 -2495 2496 1445 7 1370 211 290 0 16 chr1 102948300 102948363 -94247069 - B4A SINE B4 -229 63 2 7 1370 220 53 26 26 chr1 102948991 102949030 -94246402 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1370 446 332 48 29 chr1 102949687 102949960 -94245472 + B4 SINE B4 2 279 -13 7 1370 430 333 56 77 chr1 102950114 102950348 -94245084 + MLT2B2 LTR ERVL 32 260 -255 7 1370 235 295 63 0 chr1 102950453 102950548 -94244884 + Lx8 LINE L1 6852 6952 -521 7 1370 260 308 0 0 chr1 102950822 102950887 -94244545 + RMER15 LTR ERVL 403 467 -108 7 1370 665 235 28 25 chr1 102950911 102951071 -94244361 + RLTR25A LTR ERVK 6 152 -876 7 1370 2133 152 191 9 chr1 102953229 102953680 -94241752 - RMER16 LTR ERVK 0 533 1 7 1370 319 372 32 58 chr1 102953697 102953851 -94241581 + MLT2B2 LTR ERVL 405 554 0 7 1370 588 319 113 45 chr1 102953952 102954287 -94241145 + RLTR9A LTR ERVK 1 358 -10 7 1370 414 0 0 0 chr1 102954900 102954946 -94240486 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1370 261 339 45 30 chr1 102955197 102955331 -94240101 + MLT1A1 LTR MaLR 13 148 -260 7 1370 240 343 19 10 chr1 102955421 102955524 -94239908 + MLT1A1 LTR MaLR 259 362 -3 7 1370 1929 175 6 53 chr1 102956559 102957030 -94238402 - L1_Mur2 LINE L1 -834 5043 4595 7 1370 1159 75 7 0 chr1 102957312 102957458 -94237974 - B1_Mus2 SINE Alu 0 147 1 7 1370 234 0 0 0 chr1 102957733 102957759 -94237673 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1370 279 274 14 0 chr1 102957882 102957955 -94237477 + CT-rich Low_complexity Low_complexity 5 78 0 7 1370 1773 234 17 46 chr1 102959059 102959244 -94236188 + MTC LTR MaLR 13 198 -223 7 1370 371 167 18 44 chr1 102959244 102959357 -94236075 + L1Md_F2 LINE L1 6473 6582 0 7 1370 1773 234 17 46 chr1 102959357 102959584 -94235848 + MTC LTR MaLR 199 413 -8 7 1370 417 133 0 0 chr1 102959651 102959726 -94235706 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1370 1503 54 0 0 chr1 102960565 102960751 -94234681 - L1Md_T LINE L1 -2 6580 6395 7 1370 325 241 16 44 chr1 102960912 102961094 -94234338 + (TTATA)n Simple_repeat Simple_repeat 2 178 0 7 1370 393 315 6 22 chr1 102961418 102961600 -94233832 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1370 234 291 157 39 chr1 102961645 102961874 -94233558 - RMER12 LTR ERVK -325 997 742 7 1370 3222 32 0 0 chr1 102961963 102962342 -94233090 + L1Md_A LINE L1 6201 6579 -3 7 1370 264 352 25 6 chr1 102963218 102963381 -94232051 + RMER15-int LTR ERVL 456 621 -4378 7 1370 339 382 61 9 chr1 102963769 102963999 -94231433 + RMER15-int LTR ERVL 1983 2224 -2775 7 1370 703 339 76 14 chr1 102964143 102964589 -94230843 + RMER15-int LTR ERVL 4161 4634 -365 7 1370 979 83 8 0 chr1 102965301 102965434 -94229998 - B1_Mus1 SINE Alu 0 148 15 7 1370 382 285 18 85 chr1 102965303 102965468 -94229964 - B4A SINE B4 -68 224 71 7 1370 1299 112 5 9 chr1 102965468 102965803 -94229629 - L1_Mus2 LINE L1 -3511 2372 2161 7 1370 4010 63 2 8 chr1 102965803 102966317 -94229115 + L1_Mus2 LINE L1 6053 6563 -3 7 1370 261 298 0 35 chr1 102966359 102966446 -94228986 + RMER15 LTR ERVL 338 421 -154 7 1370 24 77 0 0 chr1 102967271 102967323 -94228109 + AT_rich Low_complexity Low_complexity 1 52 0 7 1370 24 0 0 0 chr1 102967935 102967959 -94227473 + AT_rich Low_complexity Low_complexity 1 24 0 7 1370 24 32 0 0 chr1 102968151 102968182 -94227250 + AT_rich Low_complexity Low_complexity 1 31 0 7 1370 720 291 29 81 chr1 102968230 102968511 -94226921 + B4A SINE B4 2 272 -20 7 1370 441 36 0 0 chr1 102968511 102968566 -94226866 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 7 1370 720 291 29 81 chr1 102968566 102968591 -94226841 + B4A SINE B4 273 292 0 7 1370 435 250 99 62 chr1 102969656 102969818 -94225614 + RMER15 LTR ERVL 372 539 -36 7 1370 1508 106 0 34 chr1 102969822 102970056 -94225376 + BGLII LTR ERVK 196 421 0 7 1370 313 327 53 41 chr1 102970583 102970752 -94224680 - MTEb LTR MaLR -4 375 205 7 1370 299 338 7 14 chr1 102971101 102971242 -94224190 + (TATATG)n Simple_repeat Simple_repeat 6 145 0 7 1370 21 57 0 0 chr1 102971263 102971298 -94224134 + AT_rich Low_complexity Low_complexity 1 35 0 7 1370 549 231 32 0 chr1 102971545 102971731 -94223701 + Lx6 LINE L1 3053 3244 -2633 7 1370 413 229 41 0 chr1 102971702 102971824 -94223608 + Lx6 LINE L1 3348 3474 -2403 7 1370 2858 183 94 2 chr1 102971824 102972421 -94223011 + Lx4A LINE L1 6396 7047 -11 7 1370 4918 226 101 50 chr1 102972437 102973639 -94221793 + Lx6 LINE L1 3754 5095 -785 7 1370 183 42 0 0 chr1 102973639 102973663 -94221769 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 1370 4918 235 78 46 chr1 102973663 102974790 -94220642 + Lx6 LINE L1 5096 6187 -1273 7 1370 1166 291 101 48 chr1 102974820 102975325 -94220107 - Lx5 LINE L1 -5 7045 6514 7 1370 600 337 14 24 chr1 102975447 102975657 -94219775 - B3 SINE B2 -1 215 8 7 1370 346 315 30 30 chr1 102976452 102976586 -94218846 - MTD LTR MaLR -8 411 278 7 1370 1346 191 30 102 chr1 102976656 102977155 -94218277 + RMER17C LTR ERVK 16 439 -519 7 1370 355 308 38 0 chr1 102977157 102977290 -94218142 - MTD LTR MaLR -264 155 18 7 1370 4565 153 56 62 chr1 102977661 102978212 -94217220 - RMER17A2 LTR ERVK -5 901 363 7 1370 672 36 0 0 chr1 102978212 102978295 -94217137 + (GA)n Simple_repeat Simple_repeat 1 83 0 7 1370 4565 153 56 62 chr1 102978295 102978649 -94216783 - RMER17A2 LTR ERVK -544 362 1 7 1370 288 304 2 12 chr1 102978809 102978908 -94216524 + MLT1A0 LTR MaLR 35 134 -274 7 1370 3777 152 26 12 chr1 102979058 102979603 -94215829 + L1VL2 LINE L1 315 855 -5480 7 1370 1649 103 41 0 chr1 102979603 102979846 -94215586 + L1_Mus1 LINE L1 6315 6567 0 7 1370 4509 117 10 12 chr1 102979846 102980703 -94214729 + L1VL2 LINE L1 856 1725 -1890 7 1370 249 279 25 145 chr1 102980695 102980854 -94214578 + L1VL1 LINE L1 218 357 -6065 7 1370 355 262 23 16 chr1 102980934 102981062 -94214370 + L1VL4 LINE L1 675 803 -5813 7 1370 16054 146 32 28 chr1 102981070 102982809 -94212623 + L1VL4 LINE L1 725 2465 -3418 7 1370 7267 47 66 0 chr1 102982809 102983743 -94211689 + L1Md_F2 LINE L1 5587 6582 0 7 1370 16054 141 36 32 chr1 102983743 102984771 -94210661 + L1VL4 LINE L1 2466 3496 -2387 7 1370 319 21 20 20 chr1 102984771 102984820 -94210612 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 7 1370 16054 141 36 32 chr1 102984820 102985662 -94209770 + L1VL4 LINE L1 3497 4356 -1527 7 1370 3139 55 16 0 chr1 102985664 102986043 -94209389 - IAPEY_LTR LTR ERVK 0 385 1 7 1370 20514 51 3 6 chr1 102986043 102988761 -94206671 - IAPEy-int LTR ERVK 0 7513 4804 7 1370 6896 98 7 9 chr1 102988761 102989822 -94205610 - IAPEy-int LTR ERVK -6455 1058 1 7 1370 3116 55 16 0 chr1 102989822 102990201 -94205231 - IAPEY_LTR LTR ERVK 0 385 1 7 1370 7158 118 9 1 chr1 102990201 102991348 -94204084 + L1VL4 LINE L1 4354 5509 -374 7 1370 5588 204 8 56 chr1 102991350 102991927 -94203505 + Lx LINE L1 4538 5113 -770 7 1370 957 104 0 7 chr1 102991927 102992062 -94203370 + B1_Mus1 SINE Alu 2 135 -13 7 1370 749 55 23 16 chr1 102992062 102992191 -94203241 + (CAAAA)n Simple_repeat Simple_repeat 1 130 0 7 1370 5588 204 8 56 chr1 102992191 102992424 -94203008 + Lx LINE L1 5114 5305 -578 7 1370 5131 40 8 6 chr1 102992424 102993049 -94202383 + L1Md_T LINE L1 5945 6570 -12 7 1370 5690 158 31 21 chr1 102993049 102994384 -94201048 + Lx LINE L1 5306 6650 -4 7 1370 739 183 203 5 chr1 102994610 102994797 -94200635 + URR1A DNA MER1_type 1 224 -2 7 1370 923 324 53 6 chr1 102995149 102995487 -94199945 - ORR1E LTR MaLR -5 354 1 7 1370 187 320 27 0 chr1 102995668 102995743 -94199689 + MIRb SINE MIR 89 165 -103 7 1370 424 367 40 7 chr1 102995940 102996088 -94199344 - B4A SINE B4 -139 153 1 7 1370 288 333 33 25 chr1 102997069 102997189 -94198243 + RMER13A LTR ERVK 1 121 -739 7 1370 313 177 0 0 chr1 102997190 102997252 -94198180 + L1_Mm LINE L1 4304 4365 -1518 7 1370 6258 164 38 2 chr1 102997254 102998399 -94197033 + Lx2 LINE L1 5809 6995 -2 7 1370 1078 106 0 22 chr1 102998417 102998600 -94196832 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 7 1370 1019 238 37 29 chr1 102998606 102998848 -94196584 + RMER13A LTR ERVK 159 402 -458 7 1370 7137 78 4 11 chr1 102998968 102999997 -94195435 - L1Md_F2 LINE L1 0 6582 5588 7 1370 2096 63 0 11 chr1 103000000 103000272 -94195160 - L1_Mm LINE L1 -326 5557 5289 1 1370 7881 50 5 7 chr1 103000276 103001574 -94193858 - L1Md_F2 LINE L1 0 6582 5289 2 1370 7887 50 5 6 chr1 103001579 103002876 -94192556 - L1Md_F2 LINE L1 0 6582 5289 2 1370 7872 52 5 6 chr1 103002880 103004177 -94191255 - L1Md_F2 LINE L1 0 6582 5289 2 1370 16981 58 4 3 chr1 103004181 103007088 -94188344 - L1Md_F2 LINE L1 0 6582 3673 3 1370 3434 84 0 0 chr1 103007087 103007553 -94187879 - L1_Mm LINE L1 -581 5302 4837 4 1370 21 36 0 0 chr1 103008219 103008247 -94187185 + AT_rich Low_complexity Low_complexity 1 28 0 5 1370 769 244 34 73 chr1 103008822 103009056 -94186376 - MTC LTR MaLR -196 225 1 6 1370 189 74 0 0 chr1 103009479 103009506 -94185926 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1370 366 23 0 0 chr1 103009951 103009994 -94185438 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 8 1370 494 0 33 0 chr1 103010095 103010156 -94185276 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 9 1370 265 254 155 17 chr1 103010215 103010331 -94185101 - Lx4B LINE L1 -55 7003 6872 1 1370 206 98 0 47 chr1 103010350 103010393 -94185039 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 1 1370 255 263 0 0 chr1 103010673 103010730 -94184702 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1370 457 119 24 0 chr1 103010736 103010820 -94184612 - ORR1A2 LTR MaLR -241 86 1 1 1370 1563 227 39 40 chr1 103010821 103011367 -94184065 - L1_Mur3 LINE L1 -3953 1927 1383 1 1370 1772 278 77 29 chr1 103011448 103012324 -94183108 - L1_Mur3 LINE L1 -6387 1341 361 1 1370 335 375 63 63 chr1 103012384 103012700 -94182732 - L2 LINE L2 -357 3062 2747 1 1370 188 0 74 0 chr1 103012703 103012730 -94182702 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1370 225 345 127 45 chr1 103012901 103013192 -94182240 - L2 LINE L2 -862 2557 2243 1 1370 540 0 0 0 chr1 103014417 103014477 -94180955 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1370 386 210 47 29 chr1 103014478 103014721 -94180711 + (TCTA)n Simple_repeat Simple_repeat 1 247 0 1 1370 17052 60 21 19 chr1 103015044 103016691 -94178741 - L1Md_F2 LINE L1 0 6582 4899 1 1370 225 153 62 92 chr1 103016691 103016756 -94178676 + RMER20A LTR ERVK 186 248 -268 2 1370 17052 60 21 19 chr1 103016756 103018086 -94177346 - L1Md_F2 LINE L1 0 4898 3537 1 1370 1007 333 50 14 chr1 103018573 103018932 -94176500 - MTEa LTR MaLR -7 372 1 2 1370 272 102 20 0 chr1 103019570 103019619 -94175813 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 1370 345 302 273 22 chr1 103020037 103020264 -94175168 + RMER15 LTR ERVL 292 575 0 2 1370 397 364 23 42 chr1 103020560 103020775 -94174657 + MLT1I LTR MaLR 1 211 -200 2 1370 424 360 81 27 chr1 103021443 103021703 -94173729 - B4 SINE B4 -14 278 5 2 171 1130 318 38 9 chr1 103022280 103022623 -94172809 + ORR1E LTR MaLR 2 354 -5 2 1371 934 288 54 43 chr1 103022705 103023054 -94172378 - MTE2a LTR MaLR -18 361 9 2 1371 352 277 0 24 chr1 103023914 103023999 -94171433 + B1F2 SINE Alu 50 132 -17 2 1371 247 323 0 20 chr1 103024015 103024113 -94171319 + GA-rich Low_complexity Low_complexity 2 97 0 2 1371 2142 94 20 62 chr1 103024518 103024859 -94170573 - IAPLTR2b LTR ERVK 0 327 1 3 1371 250 214 163 23 chr1 103025076 103025162 -94170270 - RMER10A LTR ERVL -27 415 318 3 1371 554 321 56 11 chr1 103025815 103026083 -94169349 - B4A SINE B4 -8 284 5 3 1371 198 0 0 0 chr1 103026752 103026774 -94168658 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1371 389 360 116 0 chr1 103026834 103026998 -94168434 - MTD LTR MaLR -219 200 18 3 1371 587 248 61 37 chr1 103027559 103027722 -94167710 - B3 SINE B2 -11 205 39 3 1371 667 311 70 52 chr1 103027713 103028150 -94167282 + RMER15 LTR ERVL 138 575 0 3 1371 7900 53 3 2 chr1 103028343 103029857 -94165575 - L1Md_F2 LINE L1 -12 6570 5055 3 1371 1628 204 45 8 chr1 103030082 103030318 -94165114 + RMER17C LTR ERVK 19 433 -525 3 1371 1062 92 0 0 chr1 103030318 103030492 -94164940 + (TC)n Simple_repeat Simple_repeat 2 175 0 3 1371 1628 195 38 5 chr1 103030492 103030672 -94164760 + RMER17C LTR ERVK 216 397 -13 3 1371 1857 73 46 0 chr1 103030653 103030913 -94164519 - ORR1A1-int LTR MaLR -1338 454 183 4 1371 6343 54 1 1 chr1 103030907 103031728 -94163704 + ORR1A1-int LTR MaLR 962 1782 -10 4 1371 2891 38 6 0 chr1 103031738 103032080 -94163352 + ORR1A0 LTR MaLR 1 344 -2 4 1371 662 138 38 8 chr1 103032080 103032200 -94163232 + Lx2 LINE L1 6873 6997 0 4 1371 623 183 0 0 chr1 103032204 103032319 -94163113 - Lx4A LINE L1 -1067 5991 5877 4 1371 723 144 0 0 chr1 103032320 103032431 -94163001 - Lx4A LINE L1 -1151 5907 5797 4 1371 1077 227 26 4 chr1 103032442 103032672 -94162760 + Lx4A LINE L1 6822 7056 -2 4 1371 23 0 0 0 chr1 103032728 103032751 -94162681 + AT_rich Low_complexity Low_complexity 1 23 0 4 1371 853 96 13 0 chr1 103032886 103033042 -94162390 + (TC)n Simple_repeat Simple_repeat 1 158 0 4 1371 355 389 69 25 chr1 103033092 103033337 -94162095 + B4A SINE B4 2 257 -35 4 1371 1079 267 43 43 chr1 103033378 103033850 -94161582 - RMER17A2 LTR ERVK -382 524 1 4 1371 201 178 0 0 chr1 103033985 103034030 -94161402 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1371 559 260 47 8 chr1 103034204 103034332 -94161100 + ETnERV2-int LTR ERVK 7070 7202 -204 5 1371 519 341 6 22 chr1 103035645 103035828 -94159604 - B3A SINE B2 -18 180 1 5 1371 909 316 95 22 chr1 103036520 103036973 -94158459 + Lx8 LINE L1 6988 7473 0 5 1371 346 172 0 44 chr1 103036976 103037067 -94158365 + (CATA)n Simple_repeat Simple_repeat 2 88 0 5 1371 507 326 59 49 chr1 103037599 103037802 -94157630 + ID_B1 SINE B4 11 215 -9 5 1371 728 356 75 10 chr1 103038269 103038561 -94156871 + ORR1E LTR MaLR 4 314 -45 5 1371 453 257 189 7 chr1 103038701 103038854 -94156578 - B3A SINE B2 -15 183 3 5 1371 436 136 11 11 chr1 103039116 103039205 -94156227 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 1371 291 54 0 0 chr1 103039205 103039242 -94156190 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1371 302 0 0 26 chr1 103041086 103041125 -94154307 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1371 297 75 0 0 chr1 103041160 103041200 -94154232 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1371 295 330 25 42 chr1 103041735 103041855 -94153577 - B4A SINE B4 -27 265 148 6 1371 2760 9 6 0 chr1 103042636 103042953 -94152479 + L1Md_A LINE L1 6264 6582 0 6 1371 513 0 0 0 chr1 103043462 103043519 -94151913 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 6 1371 612 329 73 17 chr1 103043611 103043967 -94151465 + MTE2a LTR MaLR 1 376 -3 6 1371 11015 10 1 0 chr1 103044545 103045794 -94149638 + L1Md_A LINE L1 4337 5586 -297 6 1371 8825 13 0 0 chr1 103045794 103046790 -94148642 + L1Md_A LINE L1 5587 6582 0 6 1371 180 125 0 0 chr1 103047283 103047315 -94148117 + (CATA)n Simple_repeat Simple_repeat 3 34 0 6 1371 3327 152 10 25 chr1 103047337 103047936 -94147496 - L1_Mur2 LINE L1 -605 5272 4683 6 1371 2521 224 26 4 chr1 103047934 103048475 -94146957 + L1_Mur2 LINE L1 5290 5842 -35 6 1371 713 299 10 45 chr1 103048699 103048985 -94146447 - MTE2b LTR MaLR -18 361 89 6 1371 414 286 109 0 chr1 103049652 103049799 -94145633 - MER2 DNA MER2_type -76 269 107 7 1371 30 0 0 0 chr1 103050136 103050166 -94145266 + AT_rich Low_complexity Low_complexity 1 30 0 7 1371 263 122 20 0 chr1 103050183 103050232 -94145200 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1371 558 187 6 13 chr1 103051079 103051236 -94144196 + CT-rich Low_complexity Low_complexity 1 156 0 7 1371 268 391 102 25 chr1 103051392 103051589 -94143843 - B4 SINE B4 -66 226 15 7 1371 5010 151 68 23 chr1 103051600 103052202 -94143230 - RMER17B LTR ERVK 0 958 318 7 1371 180 0 0 0 chr1 103052202 103052222 -94143210 + (GA)n Simple_repeat Simple_repeat 2 21 0 7 1371 5010 151 68 23 chr1 103052222 103052536 -94142896 - RMER17B LTR ERVK -641 317 3 7 1371 33 0 0 0 chr1 103052631 103052664 -94142768 + AT_rich Low_complexity Low_complexity 1 33 0 7 1371 185 100 0 48 chr1 103053191 103053233 -94142199 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1371 823 361 38 20 chr1 103053351 103053696 -94141736 + MTE2b LTR MaLR 6 356 -23 7 1371 23 54 0 0 chr1 103054172 103054209 -94141223 + AT_rich Low_complexity Low_complexity 1 37 0 8 1371 558 108 0 0 chr1 103055101 103055184 -94140248 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 8 1371 260 254 17 0 chr1 103055797 103055856 -94139576 - B3A SINE B2 -138 60 1 8 1371 1524 204 14 37 chr1 103056291 103056587 -94138845 + RLTR20B2 LTR ERVK 2 290 -270 8 1371 270 56 0 0 chr1 103056587 103056623 -94138809 - L1_Mus1 LINE L1 -497 6070 6035 8 1371 496 79 0 33 chr1 103056623 103056715 -94138717 + L1Md_F2 LINE L1 6494 6582 0 8 1371 1202 219 55 15 chr1 103056717 103056894 -94138538 + RLTR20B2 LTR ERVK 277 465 -95 8 1371 204 40 0 0 chr1 103056894 103056919 -94138513 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1371 1202 219 55 15 chr1 103056919 103057014 -94138418 + RLTR20B2 LTR ERVK 466 559 -1 8 1371 384 256 12 12 chr1 103057017 103057100 -94138332 + B4 SINE B4 208 290 -2 8 1371 801 21 0 0 chr1 103057144 103057239 -94138193 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1371 747 72 0 0 chr1 103057286 103057383 -94138049 - B1_Mm SINE Alu -45 102 6 8 1371 364 310 60 40 chr1 103057394 103057545 -94137887 - B4 SINE B4 -9 283 130 9 1371 7621 163 11 4 chr1 103058163 103060328 -94135104 - L1_Mus4 LINE L1 -70 6566 4387 9 1371 306 222 0 0 chr1 103060320 103060392 -94135040 + L1_Mus4 LINE L1 4283 4354 -1529 9 1371 184 0 62 31 chr1 103060393 103060425 -94135007 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 9 1371 1158 202 9 0 chr1 103060456 103060669 -94134763 + RLTR17 LTR ERVK 378 592 -100 9 1371 3479 232 68 64 chr1 103060770 103062306 -94133126 + RMER3D-int LTR ERVK 2 1855 -987 9 1371 245 313 40 20 chr1 103062359 103062460 -94132972 + MTD LTR MaLR 8 110 -309 9 1371 2089 192 35 30 chr1 103062479 103062882 -94132550 - MTC LTR MaLR -8 413 9 9 1371 429 302 44 30 chr1 103062853 103063130 -94132302 + MTD LTR MaLR 83 400 -19 9 1371 342 0 0 0 chr1 103063602 103063640 -94131792 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1371 556 333 0 12 chr1 103064223 103064393 -94131039 - MT2A LTR ERVL -105 428 261 9 1371 707 328 48 73 chr1 103065426 103065798 -94129634 - MTE2a LTR MaLR 0 379 17 9 1371 3440 95 4 4 chr1 103065960 103066447 -94128985 - RLTR1C LTR ERV1 -16 487 1 1 1371 397 289 43 53 chr1 103066447 103066646 -94128786 + MTE2b LTR MaLR 166 378 -1 1 1371 29463 55 4 3 chr1 103066767 103071244 -94124188 - L1Md_F2 LINE L1 -1 6581 2146 1 1371 379 285 83 68 chr1 103071356 103071608 -94123824 - L1M2 LINE L1 -3213 2930 2675 1 1371 770 285 80 37 chr1 103071642 103072043 -94123389 + L1M3 LINE L1 3553 3970 -2170 1 1371 280 312 0 0 chr1 103072093 103072170 -94123262 + Lx9 LINE L1 6628 6704 -940 1 1371 267 312 54 34 chr1 103072259 103072408 -94123024 + Lx9 LINE L1 7065 7216 -428 1 1371 180 0 0 0 chr1 103072680 103072700 -94122732 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1371 16323 45 5 0 chr1 103072701 103074729 -94120703 + L1Md_F2 LINE L1 3548 5586 -297 1 1371 7490 68 2 8 chr1 103074729 103075718 -94119714 + L1Md_F2 LINE L1 5587 6569 -13 1 1371 12525 176 20 53 chr1 103075735 103076565 -94118867 + Lx3C LINE L1 3227 4037 -1849 1 1371 180 0 0 0 chr1 103076565 103076585 -94118847 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1371 12525 176 20 53 chr1 103076585 103078233 -94117199 + Lx3C LINE L1 4038 5621 -265 1 1371 1018 110 7 0 chr1 103078233 103078378 -94117054 - B1_Mm SINE Alu 0 147 2 1 1371 12525 185 17 28 chr1 103078378 103079121 -94116311 + Lx3C LINE L1 5608 6350 -626 1 1371 820 159 21 0 chr1 103079117 103079262 -94116170 - Lx3C LINE L1 -1131 5845 5698 1 1371 3011 169 78 5 chr1 103079259 103079836 -94115596 + Lx3C LINE L1 6356 6974 -2 1 1371 186 43 0 0 chr1 103079838 103079861 -94115571 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1371 695 393 25 25 chr1 103080226 103080482 -94114950 + B4A SINE B4 5 266 -26 1 1371 486 314 55 114 chr1 103080482 103080885 -94114547 - MTE2a LTR MaLR 0 379 1 1 1371 695 393 25 25 chr1 103080885 103080910 -94114522 + B4A SINE B4 267 286 -6 1 1371 1600 241 28 0 chr1 103080970 103081331 -94114101 + ORR1D1 LTR MaLR 1 371 -3 1 1371 21 36 0 0 chr1 103081620 103081648 -94113784 + AT_rich Low_complexity Low_complexity 1 28 0 1 1371 231 326 57 44 chr1 103082490 103082718 -94112714 + RLTR15 LTR ERVK 48 278 -81 1 1371 22 35 0 0 chr1 103083206 103083235 -94112197 + AT_rich Low_complexity Low_complexity 1 29 0 1 1371 408 55 0 0 chr1 103083861 103083916 -94111516 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1371 633 296 6 23 chr1 103083934 103084107 -94111325 - B3A SINE B2 -22 176 7 1 1371 23 0 0 0 chr1 103084185 103084208 -94111224 + AT_rich Low_complexity Low_complexity 1 23 0 1 1371 1104 89 0 7 chr1 103085046 103085193 -94110239 - B1_Mm SINE Alu -1 146 1 1 1371 589 295 40 7 chr1 103085312 103085462 -94109970 + B3A SINE B2 3 157 -41 1 1371 438 20 0 0 chr1 103085468 103085519 -94109913 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1371 28 71 0 0 chr1 103085519 103085575 -94109857 + AT_rich Low_complexity Low_complexity 1 56 0 1 1371 546 351 52 22 chr1 103086594 103086865 -94108567 + B4 SINE B4 14 292 0 1 1371 21 0 0 0 chr1 103087729 103087750 -94107682 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 797 290 76 17 chr1 103087789 103088080 -94107352 - RMER5 LTR ERV1 -2 532 225 1 1371 208 143 0 0 chr1 103088081 103088116 -94107316 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1371 1047 103 7 0 chr1 103088116 103088262 -94107170 - B1_Mus1 SINE Alu 0 148 2 1 1371 1114 306 56 36 chr1 103088316 103088675 -94106757 + ORR1C2 LTR MaLR 1 366 -4 1 1371 395 230 124 60 chr1 103088679 103088864 -94106568 + ORR1C2-int LTR MaLR 5 201 -1057 1 1371 951 314 50 41 chr1 103089406 103089867 -94105565 - RMER5 LTR ERV1 -18 516 52 1 1371 1489 246 88 59 chr1 103090115 103090301 -94105131 + RLTR11A LTR ERVK 1 204 -324 1 1371 480 18 0 0 chr1 103090301 103090358 -94105074 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1371 1489 246 88 59 chr1 103090358 103090681 -94104751 + RLTR11A LTR ERVK 205 525 -3 1 1371 1521 246 11 19 chr1 103090682 103091047 -94104385 + ORR1C2 LTR MaLR 18 379 -5 1 1371 254 115 19 0 chr1 103091057 103091109 -94104323 + (ATG)n Simple_repeat Simple_repeat 1 53 0 1 1371 297 299 155 29 chr1 103091123 103091330 -94104102 + LTR48 LTR ERV1 3 235 -552 1 1371 914 112 0 0 chr1 103091805 103091939 -94103493 + B2_Mm2 SINE B2 28 161 -34 1 1371 441 0 0 0 chr1 103091939 103091988 -94103444 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 1 1371 735 42 0 0 chr1 103093242 103093337 -94102095 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 1371 531 0 0 0 chr1 103093464 103093523 -94101909 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1371 1286 248 146 15 chr1 103093886 103094296 -94101136 - MT2A LTR ERVL -69 464 1 1 1371 923 267 50 58 chr1 103094360 103094741 -94100691 + ORR1C1 LTR MaLR 1 378 0 1 1371 2307 66 9 12 chr1 103094959 103095279 -94100153 + L1Md_F2 LINE L1 6264 6582 0 1 1371 239 370 17 77 chr1 103096024 103096141 -94099291 + RSINE1 SINE B4 23 132 -33 1 1371 186 43 0 0 chr1 103096154 103096177 -94099255 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1371 572 62 12 0 chr1 103096177 103096257 -94099175 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1371 1034 288 40 7 chr1 103096814 103097118 -94098314 - MTE2b LTR MaLR -5 374 61 1 1371 284 254 43 116 chr1 103097001 103097139 -94098293 - MT2A LTR ERVL -364 169 42 1 1371 376 300 10 10 chr1 103097779 103097880 -94097552 + B3A SINE B2 8 108 -90 1 1371 258 105 0 0 chr1 103097933 103097971 -94097461 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1371 219 69 0 0 chr1 103098092 103098121 -94097311 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1371 429 20 0 0 chr1 103098121 103098170 -94097262 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1371 543 347 40 26 chr1 103098213 103098559 -94096873 + MMERGLN-int LTR ERV1 2098 2448 -5108 1 1371 2719 158 95 28 chr1 103098735 103099696 -94095736 + Lx3_Mus LINE L1 116 1465 -4421 1 1371 19379 122 31 5 chr1 103099690 103102269 -94093163 + Lx3_Mus LINE L1 2642 5239 -647 1 1371 567 0 0 0 chr1 103102269 103102332 -94093100 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1371 19379 122 31 5 chr1 103102332 103102938 -94092494 + Lx3_Mus LINE L1 5240 5907 -1102 1 1371 288 0 0 0 chr1 103102938 103102970 -94092462 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1371 8229 135 42 8 chr1 103102970 103104014 -94091418 + Lx3_Mus LINE L1 5908 6987 -22 1 1371 180 77 0 0 chr1 103104015 103104041 -94091391 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1371 1587 94 4 8 chr1 103104059 103104295 -94091137 + L1Md_F2 LINE L1 6348 6582 0 1 1371 186 43 0 0 chr1 103104296 103104319 -94091113 + (AAATG)n Simple_repeat Simple_repeat 3 25 0 1 1371 885 230 0 46 chr1 103104583 103104802 -94090630 + MTD LTR MaLR 32 240 -179 1 1371 265 312 79 169 chr1 103104831 103105020 -94090412 + B4 SINE B4 121 292 0 1 1371 23 0 0 0 chr1 103106720 103106743 -94088689 + AT_rich Low_complexity Low_complexity 1 23 0 1 1371 273 75 0 0 chr1 103106747 103106787 -94088645 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1371 318 316 0 0 chr1 103106802 103106881 -94088551 - ID4_ SINE ID -2 81 3 1 1371 256 304 28 38 chr1 103106881 103106968 -94088464 - B4 SINE B4 -57 235 150 1 1371 3608 131 13 97 chr1 103107088 103107907 -94087525 - RMER17A LTR ERVK 0 751 1 1 1371 222 362 52 66 chr1 103107915 103108051 -94087381 - B2_Mm2 SINE B2 -60 135 2 1 1371 20490 118 51 5 chr1 103108626 103113682 -94081750 + L1Md_F LINE L1 307 5586 -297 1 1371 7877 57 5 0 chr1 103113682 103114672 -94080760 + L1Md_F2 LINE L1 5587 6581 -1 1 1371 19166 191 5 73 chr1 103114672 103115157 -94080275 + L1Md_F LINE L1 5102 5599 -284 1 1371 7066 98 2 4 chr1 103115158 103116152 -94079280 + L1Md_F2 LINE L1 5588 6579 -3 1 1371 795 98 0 0 chr1 103116279 103116402 -94079030 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1371 453 315 39 46 chr1 103116413 103116566 -94078866 - B4A SINE B4 -139 153 2 1 1371 384 350 46 105 chr1 103116700 103117056 -94078376 - MTE2a LTR MaLR -74 345 1 1 1371 232 48 48 0 chr1 103117512 103117554 -94077878 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 1371 22 35 0 0 chr1 103117640 103117669 -94077763 + AT_rich Low_complexity Low_complexity 1 29 0 1 1371 546 16 0 0 chr1 103118130 103118193 -94077239 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1371 485 292 45 86 chr1 103118218 103118439 -94076993 + B4A SINE B4 8 219 -73 1 1371 630 49 0 0 chr1 103118470 103118552 -94076880 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1371 32 0 0 0 chr1 103118639 103118671 -94076761 + AT_rich Low_complexity Low_complexity 1 32 0 1 1371 489 76 0 0 chr1 103119682 103119748 -94075684 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1371 21 71 0 0 chr1 103119837 103119879 -94075553 + AT_rich Low_complexity Low_complexity 1 42 0 1 1371 21 0 0 0 chr1 103120069 103120090 -94075342 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 28 29 0 0 chr1 103120975 103121010 -94074422 + AT_rich Low_complexity Low_complexity 1 35 0 1 1371 1690 213 21 0 chr1 103121090 103121428 -94074004 - ORR1B1 LTR MaLR -48 346 2 1 1371 296 18 52 35 chr1 103121817 103121875 -94073557 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1371 320 199 26 26 chr1 103122363 103122447 -94072985 - MTE2b LTR MaLR -15 364 281 1 1371 300 269 88 51 chr1 103123975 103124112 -94071320 - RMER15 LTR ERVL -15 560 419 1 1371 226 359 64 0 chr1 103124491 103124569 -94070863 + MIRb SINE MIR 167 249 -19 1 1371 1377 256 93 5 chr1 103125486 103125863 -94069569 + MTD LTR MaLR 10 419 0 1 1371 285 29 0 0 chr1 103125883 103125917 -94069515 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1371 213 301 24 0 chr1 103125928 103126011 -94069421 + (TATG)n Simple_repeat Simple_repeat 1 85 0 1 1371 531 253 85 12 chr1 103126211 103126375 -94069057 - B4 SINE B4 -116 176 1 1 1371 302 319 71 30 chr1 103126385 103126553 -94068879 - L1M4 LINE L1 -366 5798 5624 1 1371 357 62 0 0 chr1 103127162 103127210 -94068222 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1371 315 339 96 0 chr1 103127223 103127338 -94068094 - RSINE1 SINE B4 -29 136 11 1 1371 390 274 43 14 chr1 103127396 103127607 -94067825 - L1M4 LINE L1 -1455 4691 4475 1 1371 210 48 109 16 chr1 103127615 103127679 -94067753 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 1 1371 222 62 0 0 chr1 103127893 103127925 -94067507 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 1371 306 0 0 0 chr1 103127926 103127960 -94067472 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1371 479 339 16 0 chr1 103127969 103128096 -94067336 - RSINE1 SINE B4 -36 129 1 1 1371 1162 293 64 6 chr1 103128474 103128804 -94066628 + ORR1E LTR MaLR 1 349 -10 1 1371 23 0 0 0 chr1 103129715 103129738 -94065694 + AT_rich Low_complexity Low_complexity 1 23 0 2 1371 387 289 28 43 chr1 103129870 103130013 -94065419 + MTE2a LTR MaLR 110 251 -128 2 1371 827 102 22 0 chr1 103130013 103130150 -94065282 + L1Md_F2 LINE L1 6438 6577 -5 2 1371 14283 129 31 18 chr1 103130230 103133397 -94062035 + L1Md_F2 LINE L1 225 3420 -2463 2 1371 9342 87 2 2 chr1 103133415 103134698 -94060734 - L1_Mm LINE L1 0 5883 4601 2 1371 7553 56 3 6 chr1 103134698 103136230 -94059202 - L1Md_F2 LINE L1 0 6582 5052 2 1371 2339 41 3 0 chr1 103136230 103136523 -94058909 - L1Md_F2 LINE L1 -1274 4609 4316 2 1371 4437 70 5 0 chr1 103136523 103137095 -94058337 + L1Md_F3 LINE L1 5996 6570 -14 2 1371 17199 109 1 1 chr1 103137139 103140021 -94055411 + L1Md_F2 LINE L1 3404 6286 -296 2 1371 425 223 29 10 chr1 103140072 103140176 -94055256 + RLTR10A LTR ERVK 140 245 -166 2 1371 323 271 12 0 chr1 103140214 103140299 -94055133 + RLTR10-int LTR ERVK 216 301 -1686 2 1371 1622 146 3 59 chr1 103140299 103140619 -94054813 + L1Md_F2 LINE L1 6281 6582 0 2 1371 204 222 0 45 chr1 103140675 103140741 -94054691 + A-rich Low_complexity Low_complexity 2 64 0 2 1371 2397 201 42 20 chr1 103140744 103141247 -94054185 - RLTR31A_Mm LTR ERVK -70 514 1 2 1371 417 326 15 0 chr1 103141277 103141409 -94054023 - B3A SINE B2 -61 137 4 2 1371 315 158 18 0 chr1 103141605 103141662 -94053770 + RMER15 LTR ERVL 3 60 -515 2 1371 17881 21 1 0 chr1 103141674 103143756 -94051676 + L1_Mm LINE L1 3504 5586 -297 2 1371 8954 6 0 0 chr1 103143756 103144752 -94050680 + L1Md_T LINE L1 5587 6582 0 2 1371 329 116 0 14 chr1 103144812 103144882 -94050550 + (TTTTTG)n Simple_repeat Simple_repeat 4 72 0 2 1371 1497 316 43 18 chr1 103144898 103145404 -94050028 + RMER15 LTR ERVL 54 572 -3 2 1371 313 280 150 17 chr1 103145411 103145531 -94049901 + RSINE1 SINE B4 16 151 -14 2 1371 238 250 0 0 chr1 103145540 103145588 -94049844 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1371 564 341 22 16 chr1 103145755 103145940 -94049492 + B3 SINE B2 1 186 -30 2 1371 464 32 0 16 chr1 103145941 103146004 -94049428 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1371 1439 213 10 10 chr1 103146051 103146354 -94049078 - Lx4A LINE L1 -2 7056 6754 2 1371 1108 314 68 6 chr1 103148130 103148495 -94046937 + MTD LTR MaLR 18 405 -14 2 1371 382 386 51 33 chr1 103148641 103148914 -94046518 + B4 SINE B4 3 280 -12 2 1371 216 333 12 0 chr1 103148944 103149028 -94046404 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 2 1371 376 19 19 19 chr1 103149088 103149142 -94046290 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 2 1371 282 295 17 35 chr1 103149385 103149557 -94045875 + (CA)n Simple_repeat Simple_repeat 1 169 0 2 1371 297 109 0 0 chr1 103149634 103149680 -94045752 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1371 1148 338 108 20 chr1 103150958 103151562 -94043870 - ORR1D1-int LTR MaLR -922 658 2 2 1371 264 190 21 18 chr1 103151565 103151628 -94043804 - ORR1D1 LTR MaLR -11 368 294 2 1371 2297 69 119 11 chr1 103151632 103151984 -94043448 - RLTR10 LTR ERVK 0 390 1 2 1371 350 250 19 9 chr1 103151993 103152098 -94043334 + ORR1D1 LTR MaLR 1 106 -268 2 1371 1741 266 24 148 chr1 103152173 103152923 -94042509 - ORR1D1-int LTR MaLR -1 1508 852 2 1371 709 252 111 11 chr1 103152967 103153242 -94042190 - ORR1D1-int LTR MaLR -1031 339 1 2 1371 472 257 75 44 chr1 103153242 103153452 -94041980 - ORR1D1 LTR MaLR 0 374 149 2 1371 294 87 0 0 chr1 103153474 103153520 -94041912 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 2 1371 293 333 20 29 chr1 103153524 103153635 -94041797 - B1F1 SINE Alu 0 120 10 2 1372 360 0 0 0 chr1 103154101 103154141 -94041291 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1372 1171 75 0 0 chr1 103154473 103154620 -94040812 + B1_Mm SINE Alu 1 147 0 2 1372 225 0 0 0 chr1 103154620 103154645 -94040787 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1372 422 269 103 0 chr1 103156080 103156236 -94039196 - MER53 DNA hAT 0 193 22 2 1372 398 346 87 29 chr1 103156420 103156628 -94038804 - B4A SINE B4 -69 223 4 2 1372 397 255 91 36 chr1 103156746 103156856 -94038576 + B3A SINE B2 3 118 -80 2 1372 572 219 0 150 chr1 103158133 103158353 -94037079 + BGLII_B LTR ERVK 1 187 -254 2 1372 963 50 0 0 chr1 103158373 103158494 -94036938 + (GA)n Simple_repeat Simple_repeat 1 121 0 2 1372 325 310 30 23 chr1 103158521 103158653 -94036779 + BGLII_B LTR ERVK 299 431 -10 2 1372 777 22 0 0 chr1 103158856 103158947 -94036485 + (GA)n Simple_repeat Simple_repeat 1 91 0 2 1372 411 353 27 14 chr1 103159244 103159465 -94035967 + RMER15 LTR ERVL 220 443 -132 2 1372 528 68 0 0 chr1 103159509 103159582 -94035850 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1372 186 43 0 0 chr1 103159797 103159820 -94035612 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1372 39310 18 11 6 chr1 103159832 103165972 -94029460 - L1Md_A LINE L1 -1 6581 416 2 1372 22 56 0 0 chr1 103166701 103166737 -94028695 + AT_rich Low_complexity Low_complexity 1 36 0 2 1372 229 261 0 156 chr1 103166816 103166925 -94028507 + PB1D10 SINE Alu 25 116 -1 2 1372 587 314 20 25 chr1 103167564 103167760 -94027672 + B3 SINE B2 21 215 -1 2 1372 881 331 45 28 chr1 103168534 103168934 -94026498 + MTE2b LTR MaLR 1 406 -13 2 1372 441 0 0 0 chr1 103170254 103170303 -94025129 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1372 499 347 51 11 chr1 103170303 103170481 -94024951 - B4 SINE B4 -21 271 87 2 1372 6445 154 191 3 chr1 103171103 103173343 -94022089 - L1_Mus4 LINE L1 0 6636 3876 2 1372 1309 155 17 0 chr1 103173342 103173581 -94021851 + L1_Mur2 LINE L1 3613 3855 -2022 2 1372 4924 93 1 1 chr1 103173928 103174628 -94020804 - L1Md_F2 LINE L1 -939 4944 4245 2 1372 4830 84 0 0 chr1 103174619 103175265 -94020167 + L1Md_F2 LINE L1 4941 5586 -297 2 1372 7434 67 7 3 chr1 103175266 103176241 -94019191 + L1Md_F2 LINE L1 5588 6566 -16 2 1372 251 200 117 0 chr1 103176511 103176571 -94018861 + RLTR24 LTR ERV1 459 525 -4 2 1372 543 16 0 0 chr1 103176746 103176810 -94018622 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1372 494 350 77 14 chr1 103177220 103177429 -94018003 + B4A SINE B4 11 232 -60 2 1372 246 81 0 0 chr1 103177475 103177512 -94017920 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1372 339 248 71 53 chr1 103177570 103177740 -94017692 - MER33 DNA MER1_type -132 192 20 2 1372 195 351 82 41 chr1 103177814 103177912 -94017520 - MER5A DNA MER1_type 0 189 88 2 1372 547 330 56 20 chr1 103178037 103178232 -94017200 - ID_B1 SINE B4 -3 221 20 2 1372 21 0 0 0 chr1 103178637 103178658 -94016774 + AT_rich Low_complexity Low_complexity 1 21 0 2 1372 511 172 14 56 chr1 103178659 103178801 -94016631 - Lx2B LINE L1 -1 6999 6864 2 1372 714 119 0 0 chr1 103178838 103178972 -94016460 + (TC)n Simple_repeat Simple_repeat 1 134 0 2 1372 1160 121 40 0 chr1 103179192 103179366 -94016066 + B2_Mm2 SINE B2 1 181 -14 2 1372 183 42 0 0 chr1 103179366 103179390 -94016042 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1372 468 0 0 0 chr1 103180000 103180052 -94015380 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1372 563 291 75 14 chr1 103180168 103180381 -94015051 - Lx6 LINE L1 -3 7457 7232 2 1372 3233 223 26 35 chr1 103180386 103181231 -94014201 + RMER3D-int LTR ERVK 1775 2611 -231 2 1372 255 381 42 42 chr1 103181238 103181427 -94014005 - Lx6 LINE L1 -146 7314 7126 2 1372 280 291 82 10 chr1 103181612 103181710 -94013722 - B4 SINE B4 -175 117 3 2 1372 606 159 34 74 chr1 103181906 103182117 -94013315 + RMER3D-int LTR ERVK 2666 2791 -51 2 1372 1242 173 89 12 chr1 103182131 103182388 -94013044 - Lx2B LINE L1 -17 6983 6707 2 1372 2922 203 61 15 chr1 103182388 103182993 -94012439 + RLTR17 LTR ERVK 1 633 -59 2 1372 1843 170 9 9 chr1 103183035 103183368 -94012064 - Lx2B LINE L1 -288 6712 6380 2 1372 1229 146 5 0 chr1 103183373 103183579 -94011853 - Lx2B LINE L1 -1123 5877 5671 2 1372 4052 185 24 9 chr1 103183993 103184690 -94010742 - RLTR45-int LTR ERVK -204 7202 6495 2 1372 890 325 15 9 chr1 103184706 103185041 -94010391 - RNERVK23-int LTR ERVK -375 7842 7506 2 1372 5153 190 62 90 chr1 103185064 103186893 -94008539 - RLTR45-int LTR ERVK -1337 5907 3583 2 1372 318 267 0 55 chr1 103186921 103187012 -94008420 - RMER16-int LTR ERVK -4867 2539 2454 2 1372 468 178 93 0 chr1 103187023 103187141 -94008291 - RMER16-int LTR ERVK -5557 1849 1721 2 1372 1217 254 94 38 chr1 103187141 103187632 -94007800 - RMER16-int LTR ERVK -4783 623 241 2 1372 330 273 24 47 chr1 103187859 103187986 -94007446 - RMER16-int LTR ERVK -6940 304 181 2 1372 526 260 48 24 chr1 103188555 103188681 -94006751 - ETnERV2-int LTR ERVK -204 7202 7074 2 1372 2394 193 4 14 chr1 103188682 103189209 -94006223 + L1_Mur1 LINE L1 5175 5718 -2277 2 1372 351 89 0 0 chr1 103189795 103189851 -94005581 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1372 1573 264 35 102 chr1 103190291 103191306 -94004126 - L1VL2 LINE L1 -5674 661 5 2 1372 329 336 96 60 chr1 103191915 103192444 -94002988 - Lx8 LINE L1 -5 7468 6921 2 1372 539 371 5 11 chr1 103193289 103193477 -94001955 + MTE2b LTR MaLR 1 187 -192 2 1372 996 231 48 26 chr1 103193502 103193773 -94001659 + RMER1C Other Other 938 1214 -128 2 1372 564 115 0 0 chr1 103193779 103193883 -94001549 + (TCC)n Simple_repeat Simple_repeat 3 106 0 2 1372 452 202 35 17 chr1 103193891 103194007 -94001425 + RMER1C Other Other 1215 1332 -10 2 1372 669 289 68 21 chr1 103194007 103194198 -94001234 + MTE2b LTR MaLR 162 361 -18 2 1372 318 50 0 0 chr1 103194999 103195039 -94000393 + (CGTG)n Simple_repeat Simple_repeat 1 40 0 2 1372 931 268 89 25 chr1 103196134 103196473 -93998959 - MTD LTR MaLR 0 419 49 2 1372 2377 195 44 78 chr1 103196501 103197141 -93998291 + RLTR22_Mur LTR ERVK 44 661 -1187 2 1372 210 167 0 0 chr1 103197619 103197650 -93997782 + A-rich Low_complexity Low_complexity 1 31 0 2 1372 1116 62 7 7 chr1 103197650 103197797 -93997635 + B1_Mus2 SINE Alu 1 147 0 2 1372 210 167 0 0 chr1 103197797 103197813 -93997619 + A-rich Low_complexity Low_complexity 32 47 0 2 1372 4557 137 7 35 chr1 103197933 103198441 -93996991 - L1VL2 LINE L1 -627 2988 2480 2 1372 910 132 0 0 chr1 103198441 103198577 -93996855 + B1_Mm SINE Alu 2 137 -10 2 1372 216 0 0 0 chr1 103198577 103198601 -93996831 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1372 714 62 0 0 chr1 103198604 103198700 -93996732 + (GAAAA)n Simple_repeat Simple_repeat 2 97 0 2 1372 4557 137 7 35 chr1 103198700 103198996 -93996436 - L1VL2 LINE L1 -1136 2479 2202 2 1372 35372 35 0 0 chr1 103198995 103204437 -93990995 + L1Md_T LINE L1 50 5589 -297 2 1372 8851 9 0 3 chr1 103204437 103205436 -93989996 + L1Md_T LINE L1 5590 6585 0 2 1372 7653 118 23 17 chr1 103205446 103206903 -93988529 - L1VL2 LINE L1 -1399 2216 751 2 1372 8292 33 4 3 chr1 103206911 103207902 -93987530 - L1Md_F2 LINE L1 -3 6579 5588 2 1372 5439 92 26 4 chr1 103207905 103208678 -93986754 - L1_Mus2 LINE L1 -1 6565 5776 2 1372 1083 115 57 17 chr1 103208678 103208855 -93986577 - L1_Mus2 LINE L1 -176 6390 6207 2 1372 562 176 141 30 chr1 103208856 103208991 -93986441 - RMER17C-int LTR ERVK -557 2681 2532 2 1372 662 190 115 31 chr1 103209018 103209310 -93986122 - RMER17C-int LTR ERVK -980 2258 1769 2 1372 602 199 174 0 chr1 103209345 103209506 -93985926 - RMER17C-int LTR ERVK -1565 1673 1485 2 1372 493 262 143 63 chr1 103210349 103210650 -93984782 - RMER17C-int LTR ERVK -2709 529 205 2 1372 358 193 202 42 chr1 103210669 103210788 -93984644 - RMER17C-int LTR ERVK -3100 138 1 2 1372 972 186 20 15 chr1 103210789 103210986 -93984446 - RMER17C LTR ERVK -1 409 212 2 1372 404 178 0 0 chr1 103210983 103211056 -93984376 - RMER17C LTR ERVK -703 255 183 2 1372 6470 166 20 4 chr1 103211058 103212825 -93982607 + Lx LINE L1 4847 6635 -19 2 1372 369 0 0 0 chr1 103212828 103212869 -93982563 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1372 879 253 65 19 chr1 103213525 103213825 -93981607 - RLTR26 LTR ERVK -297 345 1 3 1372 1332 257 58 16 chr1 103213832 103214225 -93981207 + L1_Mur2 LINE L1 1576 1993 -3884 3 1372 4237 170 34 17 chr1 103214225 103215099 -93980333 - RMER17D LTR ERVK 0 889 1 3 1372 1332 265 56 15 chr1 103215099 103215164 -93980268 + L1_Mur2 LINE L1 1992 2053 -3833 3 1372 345 24 0 0 chr1 103215164 103215206 -93980226 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1372 1281 278 53 14 chr1 103215206 103215238 -93980194 + L1_Mur2 LINE L1 2054 2085 -3801 3 1372 21 36 0 0 chr1 103215580 103215608 -93979824 + AT_rich Low_complexity Low_complexity 1 28 0 3 1372 260 255 59 72 chr1 103216105 103216257 -93979175 - L1MB4 LINE L1 -13 6167 6018 3 1372 495 0 0 0 chr1 103216485 103216540 -93978892 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1372 228 382 40 70 chr1 103216563 103216763 -93978669 - B3 SINE B2 -3 213 20 3 1372 271 373 9 9 chr1 103217534 103217645 -93977787 + MTEa LTR MaLR 1 111 -268 3 1372 332 359 69 48 chr1 103217645 103217913 -93977519 + MT2A LTR ERVL 1 457 -76 3 1372 731 322 24 10 chr1 103218145 103218352 -93977080 - ID_B1 SINE B4 -1 223 14 3 1372 472 322 72 11 chr1 103218931 103219195 -93976237 - B4A SINE B4 -12 280 1 3 1372 540 159 0 0 chr1 103220371 103220459 -93974973 - ORR1C2 LTR MaLR -11 373 286 3 1372 206 62 31 0 chr1 103220727 103220759 -93974673 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 3 1372 939 229 65 32 chr1 103221028 103221290 -93974142 - ORR1C2 LTR MaLR -96 271 3 3 1372 239 353 103 0 chr1 103221323 103221459 -93973973 - Lx8 LINE L1 -273 7200 7051 3 1372 279 312 78 0 chr1 103221516 103221644 -93973788 - Lx8 LINE L1 -519 6954 6817 3 1372 1299 98 16 0 chr1 103222152 103222336 -93973096 - B2_Mm2 SINE B2 -7 188 2 3 1372 238 305 11 68 chr1 103223718 103223806 -93971626 + RSINE1 SINE B4 78 160 -5 3 1372 502 341 0 0 chr1 103224708 103224834 -93970598 + B3A SINE B2 43 168 -30 3 1372 306 0 0 0 chr1 103224839 103224873 -93970559 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1372 716 0 0 12 chr1 103224873 103224957 -93970475 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1372 750 312 67 19 chr1 103225683 103226059 -93969373 - Lx8 LINE L1 -206 7267 6874 3 1372 442 140 20 0 chr1 103226660 103226760 -93968672 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 1372 704 325 42 27 chr1 103226825 103227087 -93968345 - B4A SINE B4 -21 271 6 3 1372 37159 35 0 0 chr1 103227186 103232599 -93962833 - L1Md_T LINE L1 0 6582 1170 3 1372 4257 151 29 35 chr1 103232605 103233510 -93961922 - L1Md_T LINE L1 -5411 1205 307 3 1372 323 322 40 17 chr1 103233878 103234052 -93961380 + B3A SINE B2 3 180 -18 3 1372 1154 101 0 0 chr1 103234395 103234543 -93960889 + B1_Mus1 SINE Alu 1 148 0 3 1372 287 206 59 0 chr1 103235174 103235242 -93960190 - PB1D10 SINE Alu -1 116 45 3 1372 3602 81 51 4 chr1 103235412 103235906 -93959526 + L1Md_F2 LINE L1 6054 6570 -12 3 1372 526 332 100 30 chr1 103236049 103236319 -93959113 - B4A SINE B4 -2 290 2 3 1372 1145 148 22 0 chr1 103237056 103237238 -93958194 + RLTR26 LTR ERVK 1 186 -456 3 1372 237 33 0 0 chr1 103237280 103237310 -93958122 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1372 635 102 0 0 chr1 103237349 103237447 -93957985 + L1_Mus2 LINE L1 6469 6566 0 3 1372 448 124 33 11 chr1 103237543 103237633 -93957799 + MurERV4_19-int LTR ERVK 5686 5777 -3 3 1372 1342 243 104 121 chr1 103237635 103238253 -93957179 + RMER19C LTR ERVK 1 607 -4 3 1372 309 301 15 0 chr1 103238701 103238837 -93956595 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 1372 336 277 103 91 chr1 103238839 103239014 -93956418 + B3A SINE B2 1 177 -18 3 1372 581 384 45 5 chr1 103239321 103239520 -93955912 + B4 SINE B4 85 291 -1 3 1372 458 318 0 3 chr1 103240599 103240719 -93954713 + B1F2 SINE Alu 2 118 -31 3 1372 278 339 64 118 chr1 103240727 103240865 -93954567 + B3 SINE B2 40 177 -39 3 1372 477 0 0 0 chr1 103240865 103240918 -93954514 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1372 278 339 64 118 chr1 103240918 103240966 -93954466 + B3 SINE B2 178 216 0 3 1372 252 241 19 0 chr1 103242824 103242878 -93952554 + B4A SINE B4 1 55 -237 3 1372 478 239 68 37 chr1 103242980 103243141 -93952291 + RLTR11B LTR ERVK 284 449 -4 3 1372 2050 166 69 5 chr1 103244083 103244459 -93950973 - RLTR9D LTR ERVK -3 400 1 3 1372 1412 267 157 2 chr1 103244472 103245084 -93950348 + Lx9 LINE L1 6902 7608 -36 3 1372 2143 151 79 3 chr1 103245085 103245286 -93950146 - BGLII_Mus LTR ERVK 0 422 206 3 1372 597 28 0 0 chr1 103245286 103245357 -93950075 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1372 2143 151 79 3 chr1 103245357 103245547 -93949885 - BGLII_Mus LTR ERVK -217 205 2 3 1372 5763 198 77 58 chr1 103245547 103247345 -93948087 - RMER3D-int LTR ERVK 0 2842 1011 3 1372 561 147 33 99 chr1 103247363 103247514 -93947918 - RMER3D-int LTR ERVK -2232 610 470 3 1372 729 192 10 43 chr1 103247613 103247820 -93947612 - RMER3D-int LTR ERVK -1991 851 652 3 1372 744 52 10 0 chr1 103248047 103248144 -93947288 - BGLII_Mus LTR ERVK -239 183 86 3 1372 1367 179 30 16 chr1 103248323 103248515 -93946917 - BGLII_Mus LTR ERVK -6 416 193 3 1372 441 0 0 0 chr1 103248515 103248564 -93946868 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1372 1367 138 53 0 chr1 103248564 103248749 -93946683 - BGLII_Mus LTR ERVK -230 192 3 3 1372 32 0 0 0 chr1 103248760 103248792 -93946640 + AT_rich Low_complexity Low_complexity 1 32 0 3 1372 543 294 45 11 chr1 103249285 103249464 -93945968 - ID_B1 SINE B4 -5 219 35 3 1372 719 301 78 126 chr1 103249990 103250386 -93945046 - MTE2a LTR MaLR -2 377 1 3 1372 282 152 0 0 chr1 103250449 103250499 -93944933 + T-rich Low_complexity Low_complexity 17 66 0 3 1372 682 69 263 17 chr1 103250499 103250617 -93944815 - B1_Mm SINE Alu 0 147 1 3 1372 282 152 0 0 chr1 103250617 103250632 -93944800 + T-rich Low_complexity Low_complexity 2 16 0 3 1372 5057 164 14 11 chr1 103250637 103251542 -93943890 - Lx3A LINE L1 -6 6975 6068 3 1372 5663 83 24 3 chr1 103251541 103252323 -93943109 + L1_Mus1 LINE L1 5760 6558 -9 3 1372 416 184 10 0 chr1 103252425 103252528 -93942904 + CT-rich Low_complexity Low_complexity 1 104 0 3 1372 180 125 0 0 chr1 103252539 103252571 -93942861 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 3 1372 450 0 0 0 chr1 103252572 103252622 -93942810 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1372 725 328 117 4 chr1 103252778 103253044 -93942388 - MTE2b LTR MaLR -82 297 2 3 1372 507 344 18 14 chr1 103253583 103253801 -93941631 + ID_B1 SINE B4 1 219 -5 3 1372 594 0 0 0 chr1 103253908 103253974 -93941458 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 3 1372 600 309 103 77 chr1 103254050 103254398 -93941034 + MTE2a LTR MaLR 50 375 -4 3 1372 364 292 35 9 chr1 103254899 103255013 -93940419 + MIRb SINE MIR 149 265 -3 3 1372 210 290 43 0 chr1 103255073 103255142 -93940290 + MIR SINE MIR 189 260 -2 3 1372 195 42 0 0 chr1 103255342 103255366 -93940066 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 1372 204 40 0 0 chr1 103255369 103255394 -93940038 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1372 364 305 40 40 chr1 103255446 103255545 -93939887 - B3A SINE B2 -99 99 1 3 1372 37076 57 13 1 chr1 103256069 103262326 -93933106 - L1Md_T LINE L1 0 6585 156 3 1372 1196 43 0 0 chr1 103262434 103262573 -93932859 - B1_Mus2 SINE Alu -8 139 1 3 1372 297 316 10 87 chr1 103262818 103262922 -93932510 - RMER10B LTR ERVL -33 365 270 3 1372 756 184 0 0 chr1 103263313 103263460 -93931972 + (TA)n Simple_repeat Simple_repeat 1 147 0 3 1372 566 363 78 29 chr1 103264205 103264486 -93930946 + RMER13A LTR ERVK 95 389 -471 3 1372 282 170 33 174 chr1 103265015 103265136 -93930296 - ORR1D2 LTR MaLR -4 366 263 3 1372 339 326 0 11 chr1 103265266 103265356 -93930076 - PB1D10 SINE Alu -27 90 2 3 1372 21 57 0 0 chr1 103265413 103265448 -93929984 + AT_rich Low_complexity Low_complexity 1 35 0 3 1372 243 88 0 0 chr1 103265643 103265677 -93929755 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 3 1372 316 115 0 37 chr1 103265677 103265724 -93929708 - HAL1-3A_ME LINE L1 -838 2020 1976 3 1372 1156 231 31 37 chr1 103266112 103266454 -93928978 - RMER19B LTR ERVK -602 300 1 3 1372 256 202 38 0 chr1 103267078 103267157 -93928275 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 3 1372 1812 215 119 27 chr1 103268657 103269156 -93926276 + RLTR19-int LTR ERVK 3767 4319 -1818 3 1372 216 86 0 0 chr1 103269156 103269191 -93926241 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1372 1812 215 119 27 chr1 103269191 103269211 -93926221 + RLTR19-int LTR ERVK 4320 4334 -1803 3 1372 24 0 0 0 chr1 103269615 103269639 -93925793 + AT_rich Low_complexity Low_complexity 1 24 0 3 1372 2420 102 33 6 chr1 103269645 103270008 -93925424 - L1_Mus2 LINE L1 -3 6563 6191 3 1372 358 218 44 35 chr1 103270037 103270151 -93925281 + RLTR23 LTR ERV1 316 430 0 3 1372 182 100 67 0 chr1 103270288 103270318 -93925114 - MIRc SINE MIR -121 147 116 3 1372 33639 73 6 7 chr1 103270754 103276372 -93919060 + L1Md_A LINE L1 233 5838 -45 3 1372 367 387 22 31 chr1 103276869 103277098 -93918334 + RMER15 LTR ERVL 327 553 -22 3 1372 558 348 21 0 chr1 103277567 103277754 -93917678 + ID_B1 SINE B4 2 192 -32 3 1372 420 136 0 0 chr1 103277768 103277856 -93917576 + (GA)n Simple_repeat Simple_repeat 2 89 0 3 1372 531 45 0 0 chr1 103277880 103277946 -93917486 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1372 393 22 0 0 chr1 103278603 103278649 -93916783 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1372 688 328 24 5 chr1 103278985 103279190 -93916242 - ID_B1 SINE B4 -8 216 8 3 1372 348 24 0 0 chr1 103279507 103279548 -93915884 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1372 231 61 0 0 chr1 103279548 103279580 -93915852 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1372 1080 300 52 56 chr1 103279596 103280080 -93915352 - RLTR20B3 LTR ERVK -4 573 92 3 1372 6469 60 0 1 chr1 103280703 103281526 -93913906 - L1Md_F2 LINE L1 0 6582 5761 3 1372 250 329 37 0 chr1 103282225 103282307 -93913125 - RSINE1 SINE B4 -36 129 45 3 1372 615 185 8 0 chr1 103282312 103282431 -93913001 + Lx4A LINE L1 2721 2840 -3037 4 1372 207 162 0 0 chr1 103283233 103283270 -93912162 + A-rich Low_complexity Low_complexity 1 37 0 4 1372 1813 168 26 112 chr1 103283271 103283487 -93911945 + Lx4A LINE L1 2830 3038 -2839 4 1372 1531 43 69 32 chr1 103283487 103283703 -93911729 + L1_Mus1 LINE L1 6344 6567 0 4 1372 1813 168 26 112 chr1 103283703 103283722 -93911710 + Lx4A LINE L1 3039 3039 -2838 4 1372 444 37 0 0 chr1 103283722 103283776 -93911656 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 4 1372 1813 168 26 112 chr1 103283776 103284041 -93911391 + Lx4A LINE L1 3039 3288 -2589 4 1372 447 19 0 0 chr1 103284141 103284193 -93911239 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 171 13387 172 41 8 chr1 103284361 103288011 -93907421 + Lx4A LINE L1 3282 7057 -1 4 1373 262 273 15 0 chr1 103288025 103288091 -93907341 - RLTR25A LTR ERVK -63 1040 974 4 1373 669 149 0 0 chr1 103288130 103288244 -93907188 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 4 1373 3646 223 28 10 chr1 103288244 103289029 -93906403 - RLTR25A LTR ERVK -304 799 1 4 1373 414 184 118 105 chr1 103289185 103289243 -93906189 + MT2B LTR ERVL 100 253 -348 4 1373 756 32 0 0 chr1 103289243 103289337 -93906095 + B1_Mm SINE Alu 5 98 -49 4 1373 409 381 0 0 chr1 103289335 103289469 -93905963 + B3A SINE B2 35 168 -30 4 1373 1044 101 0 7 chr1 103289874 103290014 -93905418 - B1_Mm SINE Alu -7 140 2 4 1373 307 138 17 17 chr1 103290106 103290156 -93905276 - L1_Mm LINE L1 -514 5369 5319 4 1373 5572 31 0 0 chr1 103290156 103290808 -93904624 + L1Md_A LINE L1 5930 6581 -1 4 1373 225 0 0 0 chr1 103291000 103291025 -93904407 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1373 418 403 17 55 chr1 103291322 103291611 -93903821 + B4 SINE B4 2 279 -13 4 1373 28 48 0 0 chr1 103293680 103293722 -93901710 + AT_rich Low_complexity Low_complexity 1 42 0 4 1373 649 171 0 54 chr1 103294433 103294581 -93900851 - L1_Mus1 LINE L1 -1 6566 6427 4 1373 222 37 0 0 chr1 103294822 103294849 -93900583 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1373 405 0 0 0 chr1 103294849 103294893 -93900539 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1373 314 261 28 69 chr1 103294927 103295174 -93900258 + RMER17D LTR ERVK 224 460 -429 4 1373 764 310 39 34 chr1 103295187 103295501 -93899931 - MT2B LTR ERVL -61 540 185 4 1373 299 212 88 0 chr1 103295552 103295632 -93899800 - MT2B LTR ERVL -513 88 2 4 1373 270 330 126 8 chr1 103296218 103296337 -93899095 + MER2 DNA MER2_type 6 138 -207 4 1373 226 250 16 16 chr1 103296331 103296392 -93899040 - 5S rRNA rRNA -4 117 57 4 1373 232 238 152 62 chr1 103296419 103296531 -93898901 + MER2 DNA MER2_type 161 282 -63 4 1373 1140 274 50 8 chr1 103296637 103297001 -93898431 + MTEa LTR MaLR 1 379 0 4 1373 704 152 6 22 chr1 103297365 103297547 -93897885 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1373 607 349 34 45 chr1 103297628 103297895 -93897537 - B4A SINE B4 -2 290 27 4 1373 1576 223 99 5 chr1 103298317 103298700 -93896732 + MTC LTR MaLR 1 419 -2 4 1373 592 384 24 0 chr1 103298958 103299164 -93896268 - ID_B1 SINE B4 -13 211 1 4 1373 789 252 191 12 chr1 103299856 103300081 -93895351 - Lx9 LINE L1 -54 7590 7331 4 1373 183 80 0 0 chr1 103300081 103300106 -93895326 + (TATG)n Simple_repeat Simple_repeat 2 26 0 4 1373 789 252 191 12 chr1 103300106 103300209 -93895223 - Lx9 LINE L1 -314 7330 7203 4 1373 424 234 144 0 chr1 103300361 103300472 -93894960 - RSINE1 SINE B4 -37 128 2 4 1373 597 84 0 24 chr1 103300813 103300898 -93894534 - B1_Mm SINE Alu 0 147 65 4 1373 783 40 0 0 chr1 103301215 103301314 -93894118 + (GAA)n Simple_repeat Simple_repeat 2 100 0 4 1373 4763 22 0 0 chr1 103301483 103302038 -93893394 + L1Md_T LINE L1 5032 5586 -297 4 1373 8243 37 2 0 chr1 103302038 103303032 -93892400 + L1Md_T LINE L1 5587 6582 0 4 1373 204 243 0 0 chr1 103303402 103303476 -93891956 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1373 391 17 51 17 chr1 103304583 103304642 -93890790 + (CAAAA)n Simple_repeat Simple_repeat 4 64 0 4 1373 3106 119 34 2 chr1 103304650 103305115 -93890317 - RLTR13B1 LTR ERVK -413 480 1 4 1373 670 41 20 0 chr1 103305552 103305650 -93889782 + (TG)n Simple_repeat Simple_repeat 2 101 0 4 1373 801 268 157 70 chr1 103305677 103306099 -93889333 + RLTR20B3 LTR ERVK 21 520 -57 4 1373 21 0 0 0 chr1 103306113 103306134 -93889298 + AT_rich Low_complexity Low_complexity 1 21 0 4 1373 544 340 27 0 chr1 103306140 103306290 -93889142 - B3A SINE B2 -42 156 3 4 1373 240 348 0 0 chr1 103306461 103306530 -93888902 + PB1D10 SINE Alu 27 95 -22 4 1373 207 0 0 0 chr1 103306565 103306588 -93888844 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1373 915 59 0 0 chr1 103306615 103306733 -93888699 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 4 1373 244 200 27 0 chr1 103307056 103307131 -93888301 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1373 1075 103 14 0 chr1 103307241 103307387 -93888045 - B1_Mus1 SINE Alu 0 148 1 4 1373 4150 45 4 2 chr1 103307399 103307909 -93887523 - L1Md_F2 LINE L1 0 6582 6072 4 1373 611 0 14 0 chr1 103307910 103307982 -93887450 + L1Md_F2 LINE L1 5865 5937 -645 4 1373 4964 164 37 3 chr1 103308363 103309751 -93885681 + L1VL4 LINE L1 512 1969 -1945 4 1373 744 22 0 0 chr1 103309760 103309850 -93885582 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1373 4743 186 18 20 chr1 103309940 103310739 -93884693 - Lx2 LINE L1 -1079 5918 5114 4 1373 210 37 0 0 chr1 103310739 103310766 -93884666 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1373 4743 216 22 31 chr1 103310766 103310778 -93884654 - L1_Mm LINE L1 -770 5113 5113 4 1373 445 219 120 28 chr1 103310778 103310886 -93884546 - PB1D9 SINE Alu -2 118 1 4 1373 4743 216 22 31 chr1 103310886 103311194 -93884238 - Lx2 LINE L1 -770 5113 4809 4 1373 4014 196 1 1 chr1 103311198 103311904 -93883528 + Lx2 LINE L1 6177 6882 -115 4 1373 397 299 33 25 chr1 103312259 103312379 -93883053 + B1_Mur1 SINE Alu 19 139 -10 4 1373 257 91 45 0 chr1 103312379 103312423 -93883009 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 1373 387 0 0 0 chr1 103312889 103312932 -93882500 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1373 779 269 86 9 chr1 103312993 103313225 -93882207 - ORR1C1 LTR MaLR -128 250 1 4 1373 570 322 82 36 chr1 103313520 103313739 -93881693 - B4A SINE B4 -63 229 1 4 1373 782 284 24 24 chr1 103314246 103314455 -93880977 - MTEa LTR MaLR -7 372 164 4 1373 3916 238 80 40 chr1 103314463 103315469 -93879963 - Lx4B LINE L1 -7 7051 6014 4 1373 583 121 0 0 chr1 103315469 103315568 -93879864 - L1_Mus3 LINE L1 -7 6631 6533 4 1373 3916 238 80 40 chr1 103315568 103315588 -93879844 - Lx4B LINE L1 -1045 6013 5986 4 1373 2279 144 75 0 chr1 103315588 103316051 -93879381 + Lx4A LINE L1 5465 5966 -1092 4 1373 813 49 0 0 chr1 103316055 103316157 -93879275 + (TTTTC)n Simple_repeat Simple_repeat 3 104 0 4 1373 253 331 36 35 chr1 103316163 103316323 -93879109 - MTEa LTR MaLR -217 162 1 4 1373 912 206 42 145 chr1 103316522 103316862 -93878570 + L1VL1 LINE L1 4 490 -5928 4 1373 2837 176 48 98 chr1 103316993 103317742 -93877690 + L1_Mus2 LINE L1 525 1236 -5380 4 1373 12803 131 16 26 chr1 103317710 103319713 -93875719 + MusHAL1 LINE L1 3 1973 -739 4 1373 257 0 30 0 chr1 103319713 103319746 -93875686 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1373 12803 131 16 26 chr1 103319746 103320042 -93875390 + MusHAL1 LINE L1 1974 2279 -433 4 1373 10560 115 6 15 chr1 103320045 103322396 -93873036 + L1_Mus2 LINE L1 4236 6560 -6 4 1373 5124 162 27 0 chr1 103322400 103323340 -93872092 + L1_Mur2 LINE L1 3477 4441 -1436 4 1373 648 249 138 0 chr1 103323339 103323556 -93871876 - L1_Mur3 LINE L1 -1370 4507 4261 4 1373 256 158 23 45 chr1 103323576 103323709 -93871723 + (TATAA)n Simple_repeat Simple_repeat 1 130 0 4 1373 1447 227 55 0 chr1 103323709 103324093 -93871339 - L1_Mur3 LINE L1 -1626 4254 3850 4 1373 449 97 14 0 chr1 103324093 103324165 -93871267 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1373 361 253 0 11 chr1 103324190 103324278 -93871154 + Lx6 LINE L1 6450 6536 -924 4 1373 1251 322 94 6 chr1 103324284 103324765 -93870667 + Lx6 LINE L1 6937 7459 -1 4 1373 1159 223 55 23 chr1 103325035 103325292 -93870140 + MTC LTR MaLR 157 421 0 4 1373 230 232 0 0 chr1 103325294 103325350 -93870082 + Lx6 LINE L1 900 955 -6773 4 1373 1017 155 29 0 chr1 103325346 103325520 -93869912 - Lx3_Mus LINE L1 -560 6449 6271 4 1373 616 307 1 30 chr1 103325523 103325771 -93869661 - L1VL4 LINE L1 -5710 592 144 4 1373 633 230 16 89 chr1 103325783 103325900 -93869532 + Lx6 LINE L1 4504 4621 -1259 4 1373 270 0 0 0 chr1 103325900 103325930 -93869502 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1373 633 230 16 89 chr1 103325930 103326060 -93869372 + Lx6 LINE L1 4622 4733 -1147 4 1373 2850 248 30 18 chr1 103326064 103327289 -93868143 + Lx6 LINE L1 5160 6405 -1055 4 1373 458 325 85 10 chr1 103327290 103327489 -93867943 - B3 SINE B2 0 216 3 4 1373 676 327 86 56 chr1 103328031 103328233 -93867199 - MTE2a LTR MaLR -2 377 164 4 1373 383 52 17 0 chr1 103328233 103328291 -93867141 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1373 255 31 0 0 chr1 103328291 103328322 -93867110 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1373 676 327 86 56 chr1 103328322 103328455 -93866977 - MTE2a LTR MaLR -216 163 32 4 1373 248 378 26 53 chr1 103328689 103328840 -93866592 - RMER15 LTR ERVL -156 419 273 4 1373 279 0 0 0 chr1 103328991 103329022 -93866410 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1373 319 362 41 41 chr1 103329294 103329441 -93865991 - ID_B1 SINE B4 -12 212 66 4 1373 771 42 0 0 chr1 103329732 103329827 -93865605 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1373 342 0 0 0 chr1 103329827 103329864 -93865568 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1373 1108 78 0 0 chr1 103330025 103330166 -93865266 + B1_Mus1 SINE Alu 1 141 -7 4 1373 236 376 29 38 chr1 103330292 103330397 -93865035 + B4A SINE B4 25 128 -164 4 1373 27 29 0 0 chr1 103330938 103330972 -93864460 + AT_rich Low_complexity Low_complexity 1 34 0 4 1373 333 0 0 0 chr1 103331206 103331243 -93864189 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1373 1254 0 36 0 chr1 103331243 103331408 -93864024 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 4 1373 596 231 22 7 chr1 103331770 103331905 -93863527 - MTEb LTR MaLR -2 377 241 4 1373 297 406 0 21 chr1 103331918 103332059 -93863373 - RSINE1 SINE B4 -25 140 3 4 1373 45 93 0 0 chr1 103332157 103332286 -93863146 + AT_rich Low_complexity Low_complexity 1 129 0 4 1373 1791 267 28 2 chr1 103332363 103332499 -93862933 + RMER20A LTR ERVK 2 147 -369 4 1373 561 99 0 0 chr1 103332499 103332580 -93862852 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1373 1791 267 28 2 chr1 103332580 103332901 -93862531 + RMER20A LTR ERVK 148 470 -46 4 1373 426 337 67 6 chr1 103332903 103333011 -93862421 - Lx8 LINE L1 -121 7352 7237 4 1373 396 0 0 0 chr1 103333011 103333055 -93862377 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1373 426 337 67 6 chr1 103333055 103333125 -93862307 - Lx8 LINE L1 -237 7236 7163 4 1373 262 264 85 75 chr1 103333711 103333805 -93861627 - RLTR20C LTR ERVK 0 541 447 5 1373 3245 57 0 0 chr1 103333805 103334206 -93861226 - L1Md_F2 LINE L1 -360 6222 5822 5 1373 2078 38 19 8 chr1 103334206 103334472 -93860960 + L1Md_F2 LINE L1 6309 6577 -5 5 1373 576 111 0 0 chr1 103334472 103334562 -93860870 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 1373 1507 249 57 12 chr1 103334569 103334972 -93860460 - RLTR20C LTR ERVK -111 423 3 5 1373 1287 214 60 48 chr1 103334975 103335079 -93860353 - MYSERV16_I-int LTR ERVK -75 2251 2201 5 1373 411 83 0 0 chr1 103335079 103335139 -93860293 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1373 1287 153 77 31 chr1 103335139 103335420 -93860012 - MYSERV16_I-int LTR ERVK -126 2200 1911 5 1373 1613 196 46 20 chr1 103335554 103335945 -93859487 - MYSERV16_I-int LTR ERVK -625 1701 1301 5 1373 9250 111 30 14 chr1 103335949 103337022 -93858410 - Lx3_Mus LINE L1 0 7009 5910 5 1373 218 81 27 0 chr1 103337022 103337059 -93858373 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1373 9250 109 5 8 chr1 103337059 103337466 -93857966 - Lx3_Mus LINE L1 -1100 5909 5510 5 1373 2866 247 71 68 chr1 103337466 103337668 -93857764 - MYSERV16_I-int LTR ERVK -1044 1282 1077 5 1373 1010 103 0 7 chr1 103337668 103337814 -93857618 + B1_Mm SINE Alu 1 145 -2 5 1373 306 0 0 0 chr1 103337814 103337848 -93857584 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1373 2866 248 64 74 chr1 103337848 103339069 -93856363 - MYSERV16_I-int LTR ERVK -1489 1353 2 5 1373 1800 262 47 37 chr1 103339856 103340371 -93855061 - RLTR20C LTR ERVK 0 534 15 5 1373 1407 125 9 9 chr1 103340517 103340743 -93854689 + L1_Mus2 LINE L1 6341 6566 0 5 1373 235 367 13 0 chr1 103340783 103340862 -93854570 + MLT1D LTR MaLR 357 436 -69 5 1373 475 276 15 66 chr1 103341250 103341386 -93854046 - MT2A LTR ERVL -403 130 2 5 1373 306 0 0 0 chr1 103341464 103341498 -93853934 + (CTA)n Simple_repeat Simple_repeat 1 34 0 5 1373 279 0 0 0 chr1 103341498 103341529 -93853903 + (TAG)n Simple_repeat Simple_repeat 3 33 0 5 1373 193 109 21 21 chr1 103341535 103341582 -93853850 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1373 30 27 0 0 chr1 103341738 103341775 -93853657 + AT_rich Low_complexity Low_complexity 1 37 0 5 1373 452 146 11 0 chr1 103342396 103342485 -93852947 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1373 5268 124 7 23 chr1 103342781 103343661 -93851771 - L1_Mur1 LINE L1 -285 5601 4736 5 1373 1977 165 47 0 chr1 103343644 103344008 -93851424 - L1_Mm LINE L1 -745 5138 4758 5 1373 319 338 142 53 chr1 103344087 103344390 -93851042 - RMER15 LTR ERVL -1 574 245 5 1373 5737 45 3 1 chr1 103344849 103345557 -93849875 - L1Md_F2 LINE L1 0 6582 5874 5 1373 21 36 0 0 chr1 103345728 103345756 -93849676 + AT_rich Low_complexity Low_complexity 1 28 0 5 1373 2496 155 32 22 chr1 103345756 103346217 -93849215 - Lx3B LINE L1 0 6973 6508 5 1373 460 180 0 174 chr1 103346217 103346281 -93849151 - Lx3B LINE L1 -813 6160 6121 5 1373 1078 95 0 0 chr1 103346281 103346428 -93849004 - B1_Mus2 SINE Alu 0 147 1 5 1373 460 184 13 171 chr1 103346428 103346539 -93848893 - Lx3B LINE L1 -860 6121 6002 5 1373 600 314 17 6 chr1 103347339 103347515 -93847917 + Lx6 LINE L1 6991 7168 -292 5 1373 709 236 232 60 chr1 103347522 103347882 -93847550 + RLTR20A2 LTR ERVK 1 479 -99 5 1373 387 0 0 0 chr1 103347882 103347925 -93847507 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1373 709 200 61 20 chr1 103347925 103348016 -93847416 + RLTR20A2 LTR ERVK 480 574 -4 5 1373 637 256 6 31 chr1 103348019 103348180 -93847252 + Lx6 LINE L1 7175 7331 -129 5 1373 419 366 75 35 chr1 103349215 103349470 -93845962 - B4 SINE B4 -22 270 6 5 1373 309 26 0 0 chr1 103350301 103350339 -93845093 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 1373 240 32 0 0 chr1 103350339 103350364 -93845068 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1373 850 120 0 0 chr1 103350430 103350555 -93844877 - B1_Mus1 SINE Alu -23 125 1 5 1373 427 326 83 10 chr1 103350677 103350869 -93844563 - B3 SINE B2 -8 208 3 5 1373 378 271 169 16 chr1 103350992 103351116 -93844316 + RSINE1 SINE B4 4 146 -19 5 1373 1675 208 58 9 chr1 103351705 103352050 -93843382 - ORR1C1 LTR MaLR -8 370 9 5 1373 35239 44 4 7 chr1 103352205 103357392 -93838040 + L1Md_T LINE L1 422 5586 -297 5 1373 7991 43 16 0 chr1 103357392 103358369 -93837063 + L1Md_T LINE L1 5587 6579 -3 5 1373 213 149 21 0 chr1 103358592 103358639 -93836793 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1373 352 353 83 10 chr1 103358753 103358945 -93836487 + L1MC1 LINE L1 6107 6312 -21 5 1373 347 293 18 18 chr1 103359108 103359347 -93836085 + (TA)n Simple_repeat Simple_repeat 1 239 0 5 1373 716 139 0 86 chr1 103359388 103359585 -93835847 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1373 839 238 211 34 chr1 103359957 103360279 -93835153 - MTEb LTR MaLR 0 379 1 5 1373 22 0 0 0 chr1 103360722 103360744 -93834688 + AT_rich Low_complexity Low_complexity 1 22 0 5 1373 438 53 0 0 chr1 103360750 103360807 -93834625 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1373 231 288 26 52 chr1 103360834 103360911 -93834521 - B2_Mm2 SINE B2 -113 82 8 5 1373 207 0 0 0 chr1 103361564 103361587 -93833845 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1373 674 82 0 10 chr1 103361587 103361686 -93833746 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 5 1373 338 336 60 36 chr1 103361711 103362180 -93833252 - L1_Mur3 LINE L1 -3645 2235 1756 5 1373 318 302 24 49 chr1 103362183 103362430 -93833002 - L1_Mur3 LINE L1 -4284 1596 1356 5 1373 3960 66 2 10 chr1 103362861 103363382 -93832050 - L1Md_F2 LINE L1 0 6582 6066 5 1373 719 321 70 21 chr1 103363609 103363851 -93831581 - B4A SINE B4 -38 254 1 5 1373 260 345 10 0 chr1 103364001 103364101 -93831331 + Lx8 LINE L1 6584 6674 -1022 5 1373 1406 85 22 58 chr1 103364794 103365018 -93830414 - L1_Mus2 LINE L1 -1 6565 6350 5 1373 381 43 0 0 chr1 103365018 103365065 -93830367 + (TCC)n Simple_repeat Simple_repeat 3 49 0 5 1373 309 26 0 0 chr1 103365143 103365181 -93830251 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1373 262 257 0 13 chr1 103365185 103365260 -93830172 + GA-rich Low_complexity Low_complexity 1 74 0 5 1373 462 379 14 59 chr1 103365275 103365338 -93830094 - B4A SINE B4 -14 278 216 5 1373 665 24 12 0 chr1 103365338 103365421 -93830011 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 5 1373 462 379 14 59 chr1 103365421 103365643 -93829789 - B4A SINE B4 -77 215 6 5 1373 486 0 0 0 chr1 103366266 103366320 -93829112 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1373 411 269 22 198 chr1 103366673 103366900 -93828532 - B3 SINE B2 -27 189 1 5 1373 344 366 30 0 chr1 103366955 103367089 -93828343 - B3A SINE B2 -50 148 11 5 1373 1514 211 68 5 chr1 103367857 103368224 -93827208 + ORR1B1 LTR MaLR 5 394 0 5 1373 1183 291 46 0 chr1 103368567 103368890 -93826542 + MTE2b LTR MaLR 1 338 -41 5 1373 29 70 0 0 chr1 103369230 103369287 -93826145 + AT_rich Low_complexity Low_complexity 1 57 0 5 1373 910 316 53 52 chr1 103369419 103369830 -93825602 + MTE2a LTR MaLR 1 379 0 5 1373 2004 253 74 82 chr1 103370061 103370807 -93824625 - RLTR40 LTR ERVK -18 799 60 5 1373 364 233 16 79 chr1 103370748 103370874 -93824558 + RLTR25A LTR ERVK 986 1103 0 5 1373 3044 269 40 52 chr1 103371092 103372357 -93823075 - MYSERV16_I-int LTR ERVK -1081 1245 3 5 1373 2860 43 0 0 chr1 103372357 103372702 -93822730 + L1Md_T LINE L1 6235 6579 -3 5 1373 2490 192 6 29 chr1 103372885 103372900 -93822532 + ORR1E-int LTR MaLR 1017 1031 -932 5 1373 1769 110 0 32 chr1 103372900 103373182 -93822250 + L1Md_F2 LINE L1 6298 6570 -12 5 1373 2490 192 6 29 chr1 103373182 103373681 -93821751 + ORR1E-int LTR MaLR 1032 1519 -444 5 1373 580 89 20 10 chr1 103373681 103373783 -93821649 - L1VL1 LINE L1 -5428 994 892 5 1373 2470 187 8 0 chr1 103373751 103374228 -93821204 - L1Md_F LINE L1 -5411 1108 628 5 1373 503 197 30 22 chr1 103374229 103374364 -93821068 - L1Md_F LINE L1 -5806 713 578 5 1373 360 233 1 183 chr1 103374454 103374604 -93820828 - L1VL1 LINE L1 -6104 318 29 5 1373 407 293 130 33 chr1 103375200 103375500 -93819932 - Lx7 LINE L1 -1770 5926 5598 5 1373 1622 84 44 0 chr1 103376334 103376560 -93818872 - L1_Mus1 LINE L1 0 6567 6332 5 1373 335 26 0 0 chr1 103376561 103376600 -93818832 + L1_Mus1 LINE L1 6306 6344 -223 5 1373 279 0 0 0 chr1 103376612 103376643 -93818789 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1373 481 286 27 13 chr1 103377021 103377170 -93818262 + ORR1E LTR MaLR 6 156 -203 5 1373 3736 43 100 0 chr1 103377202 103378061 -93817371 - L1Md_F2 LINE L1 -12 6570 5626 5 1373 33568 82 4 5 chr1 103378056 103383634 -93811798 - L1Md_F2 LINE L1 -455 6127 554 5 1373 250 203 17 0 chr1 103384167 103384226 -93811206 + (TTA)n Simple_repeat Simple_repeat 1 60 0 5 1373 406 182 67 22 chr1 103384229 103384319 -93811113 - B1_Mur1 SINE Alu -20 129 36 5 1373 1508 189 22 74 chr1 103384558 103384923 -93810509 - RLTR15 LTR ERVK -1 358 13 5 1373 233 29 29 0 chr1 103385236 103385270 -93810162 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1373 585 42 0 0 chr1 103385444 103385516 -93809916 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1373 249 135 0 0 chr1 103385782 103385834 -93809598 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 5 1373 1385 76 5 0 chr1 103386220 103386405 -93809027 + MTA_Mm LTR MaLR 211 396 0 5 1373 6603 89 41 83 chr1 103386405 103387551 -93807881 + MTA_Mm-int LTR MaLR 1 1098 0 5 1373 2783 86 34 8 chr1 103387551 103387937 -93807495 + MTA_Mm LTR MaLR 1 396 0 5 1373 459 0 0 0 chr1 103388062 103388113 -93807319 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1373 474 359 21 0 chr1 103388336 103388478 -93806954 + RSINE1 SINE B4 5 149 -16 5 1373 608 338 53 13 chr1 103388655 103388883 -93806549 + B4A SINE B4 4 240 -52 5 1373 186 167 0 0 chr1 103388894 103388930 -93806502 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 5 1373 985 248 36 82 chr1 103389670 103390026 -93805406 + Lx7 LINE L1 7357 7696 0 5 1373 29 0 0 0 chr1 103390040 103390069 -93805363 + AT_rich Low_complexity Low_complexity 1 29 0 5 1373 273 317 12 0 chr1 103390093 103390175 -93805257 + L1ME1 LINE L1 5498 5580 -599 5 1373 397 320 57 44 chr1 103390395 103390692 -93804740 + L1ME1 LINE L1 5585 5885 -294 5 1373 507 319 0 0 chr1 103390830 103390965 -93804467 + B3A SINE B2 6 140 -58 5 1373 303 49 0 0 chr1 103391018 103391059 -93804373 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1373 585 314 100 65 chr1 103391461 103391703 -93803729 + MTE2a LTR MaLR 52 303 -76 5 1373 5173 47 0 0 chr1 103391703 103392338 -93803094 + L1Md_T LINE L1 5948 6582 0 5 1373 585 314 100 65 chr1 103392338 103392374 -93803058 + MTE2a LTR MaLR 304 339 -40 5 1373 32 43 0 0 chr1 103392508 103392554 -93802878 + AT_rich Low_complexity Low_complexity 1 46 0 5 1373 226 369 15 0 chr1 103393831 103393896 -93801536 - PB1D10 SINE Alu -51 66 1 5 1373 384 366 14 34 chr1 103393896 103393985 -93801447 - B4A SINE B4 -206 86 1 5 1373 609 115 0 0 chr1 103394001 103394097 -93801335 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1373 306 0 0 0 chr1 103394097 103394130 -93801302 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1373 2628 178 211 5 chr1 103394786 103395397 -93800035 - RMER19A LTR ERVK 0 737 1 5 1373 820 172 6 66 chr1 103395468 103395567 -93799865 - RMER19A LTR ERVK -557 180 93 5 1373 4063 198 15 44 chr1 103395567 103396500 -93798932 - RMER13B LTR ERVK -2 906 1 6 1373 820 172 6 66 chr1 103396500 103396581 -93798851 - RMER19A LTR ERVK -645 92 11 5 1373 581 295 25 40 chr1 103396598 103396655 -93798777 + ID_B1 SINE B4 24 218 -6 6 1373 1009 121 0 0 chr1 103396655 103396796 -93798636 + B1_Mus2 SINE Alu 1 141 -6 6 1373 180 77 0 0 chr1 103396798 103396824 -93798608 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1373 325 325 50 73 chr1 103396852 103397031 -93798401 - B4A SINE B4 -117 175 1 6 1373 22 0 0 0 chr1 103397041 103397063 -93798369 + AT_rich Low_complexity Low_complexity 1 22 0 6 1373 2582 241 74 42 chr1 103397492 103398277 -93797155 + RLTR40 LTR ERVK 4 813 -4 6 1373 282 255 78 48 chr1 103398640 103398743 -93796689 + B4A SINE B4 9 114 -178 6 1373 244 0 0 53 chr1 103398777 103398815 -93796617 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 6 1373 180 0 0 0 chr1 103398982 103399002 -93796430 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1373 531 0 0 0 chr1 103399002 103399060 -93796372 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 1373 396 182 22 22 chr1 103399616 103399751 -93795681 + (CATATA)n Simple_repeat Simple_repeat 6 140 0 6 1373 593 304 70 22 chr1 103400311 103400540 -93794892 - RMER15 LTR ERVL 0 575 336 6 1373 277 281 6 202 chr1 103400584 103400767 -93794665 - RMER15 LTR ERVL -426 149 3 6 1373 5250 130 38 15 chr1 103401359 103402654 -93792778 - Lx3B LINE L1 -649 6324 5013 6 1373 3296 182 62 0 chr1 103402655 103403271 -93792161 + Lx3A LINE L1 6325 6978 -3 6 1373 235 280 127 45 chr1 103403373 103403530 -93791902 - Tigger15a DNA TcMar -43 672 503 6 1373 440 386 8 0 chr1 103404259 103404391 -93791041 + B4A SINE B4 1 133 -159 6 1373 1239 193 82 67 chr1 103404622 103404938 -93790494 - ORR1A4 LTR MaLR -8 321 1 6 1373 724 208 80 27 chr1 103405459 103405622 -93789810 + RLTR19A LTR ERVK 96 313 -183 6 1373 323 96 19 0 chr1 103405622 103405674 -93789758 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1373 724 237 132 41 chr1 103405674 103405821 -93789611 + RLTR19A LTR ERVK 314 491 -5 6 1373 1296 205 80 101 chr1 103406334 103406670 -93788762 - ORR1B1 LTR MaLR -26 368 40 6 1373 983 156 11 11 chr1 103406667 103406848 -93788584 + ORR1B1-int LTR MaLR 1775 1955 -8 6 1373 593 221 42 14 chr1 103406842 103406984 -93788448 + ORR1B1 LTR MaLR 242 387 -7 6 1373 544 373 28 0 chr1 103407181 103407398 -93788034 + B4 SINE B4 1 223 -69 6 1373 1753 241 136 16 chr1 103408566 103408977 -93786455 + RLTR20B1 LTR ERVK 1 468 -95 6 1373 549 30 0 0 chr1 103408977 103409044 -93786388 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1373 423 0 0 0 chr1 103409044 103409090 -93786342 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1373 1753 247 48 19 chr1 103409090 103409168 -93786264 + RLTR20B1 LTR ERVK 469 541 -22 6 1373 1107 286 18 8 chr1 103409989 103410373 -93785059 + MYSERV-int LTR ERVK 6054 6441 -109 6 1373 716 162 13 31 chr1 103410373 103410532 -93784900 + Lx3_Mus LINE L1 6829 6984 -25 6 1373 466 79 26 0 chr1 103410532 103410608 -93784824 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1373 201 133 0 0 chr1 103410608 103410638 -93784794 + (GGA)n Simple_repeat Simple_repeat 2 31 0 6 1373 5369 176 26 8 chr1 103410638 103411709 -93783723 + L1_Mur2 LINE L1 4202 5291 -586 6 1373 3350 100 13 17 chr1 103411704 103412325 -93783107 + L1_Mus3 LINE L1 5891 6931 -66 6 1373 401 357 8 0 chr1 103412995 103413124 -93782308 - B4 SINE B4 -123 169 40 6 1373 334 361 27 86 chr1 103413353 103413539 -93781893 + B3A SINE B2 42 216 0 6 1373 25 0 0 0 chr1 103413962 103413987 -93781445 + AT_rich Low_complexity Low_complexity 1 25 0 6 1373 226 406 0 9 chr1 103414325 103414432 -93781000 - B4A SINE B4 0 292 187 6 1373 255 363 65 22 chr1 103414443 103414581 -93780851 - B4 SINE B4 -143 149 6 6 171 910 306 79 24 chr1 103415521 103415849 -93779583 - MTE2a LTR MaLR 0 379 34 6 1374 257 220 34 0 chr1 103416037 103416096 -93779336 + B3A SINE B2 2 62 -136 6 1374 544 342 82 41 chr1 103418112 103418356 -93777076 - B4 SINE B4 0 292 39 6 1374 589 323 75 4 chr1 103418889 103418934 -93776498 - Lx8 LINE L1 -193 7280 7236 6 1374 396 0 0 0 chr1 103418934 103418978 -93776454 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1374 589 323 75 4 chr1 103418978 103419159 -93776273 - Lx8 LINE L1 -238 7235 7038 6 1374 253 94 0 0 chr1 103419231 103419263 -93776169 - Lx8 LINE L1 -572 6901 6870 6 1374 1888 249 136 20 chr1 103419323 103419932 -93775500 - RMER19A LTR ERVK 0 737 52 6 1374 341 22 22 0 chr1 103419932 103419978 -93775454 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1374 1888 249 136 20 chr1 103419978 103420028 -93775404 - RMER19A LTR ERVK -686 51 2 6 1374 369 0 0 0 chr1 103420279 103420320 -93775112 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1374 240 184 0 0 chr1 103420486 103420535 -93774897 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1374 23 0 0 0 chr1 103420841 103420864 -93774568 + AT_rich Low_complexity Low_complexity 1 23 0 6 1374 2533 209 27 80 chr1 103421618 103422123 -93773309 - L1_Mur3 LINE L1 -1693 4187 3703 6 1374 1257 80 118 20 chr1 103422123 103422326 -93773106 - L1_Mus2 LINE L1 -2 6564 6342 6 1374 2533 209 27 80 chr1 103422326 103422533 -93772899 - L1_Mur3 LINE L1 -2178 3702 3513 6 1374 2150 219 79 31 chr1 103422796 103422860 -93772572 - RLTR20D LTR ERVK 0 568 504 6 1374 2762 45 0 3 chr1 103422860 103423198 -93772234 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1374 2150 219 79 31 chr1 103423198 103423226 -93772206 - RLTR20D LTR ERVK -65 503 467 6 1374 438 20 0 0 chr1 103423226 103423277 -93772155 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1374 2150 219 79 31 chr1 103423277 103423538 -93771894 - RLTR20D LTR ERVK -102 466 210 6 1374 609 14 0 0 chr1 103423538 103423608 -93771824 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 1374 2150 219 79 31 chr1 103423608 103423794 -93771638 - RLTR20D LTR ERVK -359 209 4 6 1374 372 22 0 0 chr1 103423819 103423864 -93771568 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1374 495 0 0 0 chr1 103423864 103423918 -93771514 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1374 402 342 19 50 chr1 103425143 103425303 -93770129 - B3 SINE B2 -34 182 28 6 1374 525 140 18 45 chr1 103426893 103427005 -93768427 + L1Md_F2 LINE L1 6472 6580 -2 6 1374 216 0 0 0 chr1 103427019 103427043 -93768389 + (CTCA)n Simple_repeat Simple_repeat 2 25 0 6 1374 471 100 0 0 chr1 103427223 103427293 -93768139 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1374 199 196 53 18 chr1 103427529 103427586 -93767846 + L3 LINE CR1 3345 3403 -1086 6 1374 432 126 0 0 chr1 103427671 103427758 -93767674 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 6 1374 264 301 0 34 chr1 103427862 103427895 -93767537 + L1M3 LINE L1 4214 4244 -1896 6 1374 248 0 0 30 chr1 103427895 103427928 -93767504 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1374 264 301 0 34 chr1 103427928 103428011 -93767421 + L1M3 LINE L1 4245 4326 -1814 6 1374 321 26 0 0 chr1 103428176 103428214 -93767218 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1374 488 327 38 48 chr1 103428237 103428446 -93766986 + B3 SINE B2 9 215 -1 6 1374 317 359 7 27 chr1 103428507 103428653 -93766779 - ID_B1 SINE B4 0 224 82 6 1374 555 258 144 27 chr1 103428811 103429123 -93766309 - RLTR28B LTR ERVL -183 341 10 6 1374 21 0 0 0 chr1 103429481 103429502 -93765930 + AT_rich Low_complexity Low_complexity 1 21 0 6 1374 440 232 86 23 chr1 103429746 103429874 -93765558 + Lx5 LINE L1 6912 7047 -3 6 1374 624 286 100 20 chr1 103429900 103430100 -93765332 + B3 SINE B2 1 216 0 6 1374 478 276 88 36 chr1 103430464 103430656 -93764776 - MTE2a LTR MaLR -3 376 175 6 1374 286 223 58 35 chr1 103430936 103431076 -93764356 + RLTR13D3 LTR ERVK 983 1051 -63 6 1374 502 382 106 9 chr1 103431103 103431330 -93764102 - B4A SINE B4 -8 284 36 6 1374 1357 174 147 11 chr1 103431483 103431762 -93763670 - ORR1A3 LTR MaLR -9 317 1 6 1374 416 202 0 35 chr1 103431763 103431850 -93763582 - B3 SINE B2 -2 214 131 6 1374 210 118 0 0 chr1 103431850 103431884 -93763548 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1374 3119 6 0 0 chr1 103432520 103432870 -93762562 + L1Md_A LINE L1 6233 6582 0 6 1374 11730 180 19 11 chr1 103433265 103436397 -93759035 - Lx LINE L1 0 6654 3489 6 1374 233 29 29 0 chr1 103436397 103436431 -93759001 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1374 11730 189 24 10 chr1 103436431 103436482 -93758950 - Lx LINE L1 -2389 3488 3438 6 1374 2768 127 89 68 chr1 103436485 103436779 -93758653 - L1VL4 LINE L1 -2083 1476 1160 6 1374 1052 48 0 7 chr1 103436779 103436927 -93758505 + L1Md_F2 LINE L1 6435 6581 -1 6 1374 3993 127 89 68 chr1 103436927 103437161 -93758271 - L1VL4 LINE L1 -2400 1159 929 6 1374 252 0 0 0 chr1 103437161 103437189 -93758243 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1374 3993 173 34 15 chr1 103437189 103437857 -93757575 - L1VL4 LINE L1 -5374 928 241 6 1374 254 324 0 0 chr1 103437963 103438031 -93757401 + RMER15 LTR ERVL 394 461 -114 6 1374 1705 172 9 15 chr1 103438430 103438766 -93756666 + RLTR15 LTR ERVK 6 339 -20 6 1374 814 319 44 15 chr1 103439636 103439910 -93755522 - B4 SINE B4 -1 291 10 6 1374 719 345 14 28 chr1 103440012 103440295 -93755137 + MTE2a LTR MaLR 86 364 -15 6 1374 257 371 9 0 chr1 103440512 103440617 -93754815 - PB1D10 SINE Alu 0 117 12 6 1374 1455 249 27 52 chr1 103441104 103441506 -93753926 + L1VL4 LINE L1 203 594 -5708 6 1374 27957 113 17 18 chr1 103441519 103443845 -93751587 - Lx3_Mus LINE L1 -8 7001 4659 6 1374 808 185 0 7 chr1 103443845 103443992 -93751440 + B1_Mus1 SINE Alu 2 147 -1 6 1374 27957 120 10 27 chr1 103443992 103444021 -93751411 - L1_Mur1 LINE L1 -1228 4658 4658 6 1374 870 113 0 0 chr1 103444021 103444163 -93751269 + (GAAAA)n Simple_repeat Simple_repeat 5 146 0 6 1374 27957 140 44 25 chr1 103444163 103448529 -93746903 - Lx3_Mus LINE L1 -1228 4658 199 6 1374 1011 97 14 0 chr1 103448566 103448710 -93746722 - B1_Mm SINE Alu 0 147 2 6 1374 24 0 0 0 chr1 103449326 103449350 -93746082 + AT_rich Low_complexity Low_complexity 1 24 0 6 1374 536 317 52 38 chr1 103449841 103450054 -93745378 + ID_B1 SINE B4 1 216 -8 6 1374 3496 192 23 35 chr1 103450936 103451752 -93743680 + L1Md_F2 LINE L1 416 1221 -5503 6 1374 28482 75 2 17 chr1 103451741 103455720 -93739712 + L1Md_F2 LINE L1 1669 5586 -297 6 1374 7295 71 24 3 chr1 103455721 103456692 -93738740 + L1Md_F2 LINE L1 5588 6578 -4 6 1374 314 338 112 29 chr1 103456806 103457047 -93738385 + L1MC LINE L1 5524 5784 -560 6 1374 25 0 0 0 chr1 103459216 103459241 -93736191 + AT_rich Low_complexity Low_complexity 1 25 0 6 1374 516 335 6 53 chr1 103459260 103459283 -93736149 - RSINE1 SINE B4 -1 164 147 6 1374 490 15 30 0 chr1 103459283 103459350 -93736082 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 6 1374 516 335 6 53 chr1 103459350 103459496 -93735936 - RSINE1 SINE B4 -19 146 3 6 1374 1517 234 82 3 chr1 103459851 103460228 -93735204 + RLTR28 LTR ERVL 97 503 -21 7 1374 257 238 27 45 chr1 103460450 103460560 -93734872 + (CATA)n Simple_repeat Simple_repeat 1 108 0 7 1374 231 402 0 9 chr1 103460567 103460680 -93734752 + MT2A LTR ERVL 351 462 -71 7 1374 419 348 93 43 chr1 103461042 103461204 -93734228 + B4A SINE B4 1 170 -122 7 1374 386 363 16 0 chr1 103461634 103461758 -93733674 + B4 SINE B4 167 292 0 7 1374 405 0 0 0 chr1 103461760 103461805 -93733627 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1374 294 312 11 130 chr1 103462655 103462832 -93732600 - B2_Mm2 SINE B2 -26 169 14 7 1374 240 398 45 18 chr1 103462929 103463039 -93732393 - RMER12 LTR ERVK -468 854 742 7 1374 299 294 182 37 chr1 103463689 103463876 -93731556 + B3 SINE B2 1 214 -2 7 1374 1030 128 0 0 chr1 103463977 103464125 -93731307 + B1_Mus1 SINE Alu 1 148 0 7 1374 243 0 0 0 chr1 103464136 103464163 -93731269 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 7 1374 3155 48 2 0 chr1 103464822 103465215 -93730217 + L1Md_T LINE L1 6189 6582 0 7 1374 342 377 56 35 chr1 103466126 103466324 -93729108 - B4 SINE B4 -20 272 71 7 1374 8965 64 0 1 chr1 103466327 103467476 -93727956 + L1Md_F2 LINE L1 4439 5586 -297 7 1374 7912 53 4 2 chr1 103467476 103468470 -93726962 + L1Md_F2 LINE L1 5587 6582 0 7 1374 24 0 0 0 chr1 103468477 103468501 -93726931 + AT_rich Low_complexity Low_complexity 1 24 0 7 1374 838 337 15 15 chr1 103468874 103469136 -93726296 - B4A SINE B4 -1 291 30 7 1374 356 394 0 0 chr1 103470099 103470264 -93725168 + (TG)n Simple_repeat Simple_repeat 2 166 0 7 1374 607 224 139 12 chr1 103470335 103470507 -93724925 + URR1A DNA MER1_type 1 194 -32 7 1374 376 355 39 6 chr1 103471046 103471202 -93724230 - Lx8 LINE L1 -248 7225 7065 7 1374 1294 239 44 52 chr1 103471573 103471935 -93723497 + ORR1C2 LTR MaLR 9 367 -17 7 1374 1817 289 30 78 chr1 103471939 103472209 -93723223 + ORR1C2-int LTR MaLR 1 263 -1107 7 1374 277 0 36 54 chr1 103472209 103472265 -93723167 + (CAAAA)n Simple_repeat Simple_repeat 4 58 0 7 1374 1817 289 30 78 chr1 103472265 103472651 -93722781 + ORR1C2-int LTR MaLR 264 626 -744 7 1374 1876 252 44 51 chr1 103473245 103473610 -93721822 + ORR1C2-int LTR MaLR 802 1161 -348 7 1374 195 42 0 0 chr1 103473610 103473634 -93721798 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1374 1876 252 44 51 chr1 103473634 103473815 -93721617 + ORR1C2-int LTR MaLR 1162 1344 -165 7 1374 3920 86 4 34 chr1 103473824 103474387 -93721045 - L1_Mus2 LINE L1 0 6566 6021 7 1374 1218 108 19 38 chr1 103474387 103474599 -93720833 + L1_Mus2 LINE L1 5774 5981 -585 7 1374 874 182 41 0 chr1 103474599 103474769 -93720663 + ORR1D1-int LTR MaLR 1194 1370 0 7 1374 660 226 73 223 chr1 103474769 103475208 -93720224 + ORR1D1 LTR MaLR 1 373 -1 7 1374 617 336 52 94 chr1 103475344 103475728 -93719704 + MTE2b LTR MaLR 1 368 -11 7 1374 1712 16 0 0 chr1 103475747 103475940 -93719492 + B2_Mm1a SINE B2 1 193 0 7 1374 289 336 29 9 chr1 103476187 103476292 -93719140 - MTD LTR MaLR -27 392 286 7 1374 577 226 164 38 chr1 103476358 103476610 -93718822 + ORR1C2 LTR MaLR 6 328 -56 7 1374 534 184 26 9 chr1 103476612 103476727 -93718705 - L1_Mm LINE L1 -366 5517 5401 7 1374 1466 162 0 4 chr1 103476725 103476985 -93718447 - L1_Mm LINE L1 -987 4896 4638 7 1374 5389 177 8 38 chr1 103476985 103478093 -93717339 + Lx LINE L1 5533 6607 -47 7 1374 371 192 16 33 chr1 103478093 103478204 -93717228 + ORR1C2 LTR MaLR 282 384 0 7 1374 284 327 150 19 chr1 103478205 103478385 -93717047 - MTD LTR MaLR -201 218 26 7 1374 1001 308 45 28 chr1 103478669 103479027 -93716405 + MTE2a LTR MaLR 3 366 -13 7 1374 396 138 0 0 chr1 103479321 103479386 -93716046 + (A)n Simple_repeat Simple_repeat 1 65 0 7 1374 22 0 0 0 chr1 103479415 103479437 -93715995 + AT_rich Low_complexity Low_complexity 1 22 0 7 1374 4612 38 0 16 chr1 103479759 103480328 -93715104 + L1Md_F2 LINE L1 6023 6582 0 7 1374 458 161 22 44 chr1 103480354 103480490 -93714942 + RMER17B LTR ERVK 315 447 -511 7 1374 384 152 0 0 chr1 103480501 103480567 -93714865 + A-rich Low_complexity Low_complexity 1 66 0 7 1374 360 272 93 187 chr1 103480570 103480859 -93714573 + B4A SINE B4 30 291 -1 7 1374 643 273 0 14 chr1 103480929 103481074 -93714358 + RLTR21 LTR ERVK 1 143 -1429 7 1374 1332 173 0 0 chr1 103481074 103481317 -93714115 + L1_Mur2 LINE L1 4597 4839 -1038 7 1374 656 347 33 22 chr1 103481383 103481657 -93713775 + B4 SINE B4 2 278 -14 7 1374 426 39 0 0 chr1 103482658 103482710 -93712722 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 1374 629 35 23 0 chr1 103482725 103482812 -93712620 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 7 1374 280 344 55 16 chr1 103483378 103483505 -93711927 - B4A SINE B4 -137 155 24 7 1374 328 244 34 17 chr1 103483739 103483856 -93711576 - Lx2B LINE L1 -3 6997 6879 7 1374 782 179 34 45 chr1 103483855 103484031 -93711401 + L1_Mur2 LINE L1 4919 5092 -785 7 1374 37882 41 2 11 chr1 103484338 103490411 -93705021 - L1Md_A LINE L1 -1 6581 569 7 1374 26 0 0 0 chr1 103490698 103490724 -93704708 + AT_rich Low_complexity Low_complexity 1 26 0 7 1374 310 216 8 31 chr1 103490915 103491044 -93704388 + GA-rich Low_complexity Low_complexity 3 128 0 7 1374 547 339 129 35 chr1 103491082 103491503 -93703929 + L1M4 LINE L1 3741 4204 -1942 7 1374 453 298 52 31 chr1 103491503 103491697 -93703735 + B3A SINE B2 1 198 0 7 1374 547 342 129 38 chr1 103491697 103491765 -93703667 + L1M4 LINE L1 4202 4273 -1873 7 1374 640 303 66 12 chr1 103492159 103492403 -93703029 - Lx8 LINE L1 -322 7151 6895 7 1374 1909 132 3 36 chr1 103493233 103493255 -93702177 + ORR1A2 LTR MaLR 1 18 -309 7 1374 3418 33 107 0 chr1 103493255 103493684 -93701748 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1374 1909 132 3 36 chr1 103493684 103493991 -93701441 + ORR1A2 LTR MaLR 19 319 -8 7 1374 4497 147 18 5 chr1 103493995 103494793 -93700639 + ORR1A2-int LTR MaLR 1 808 -984 7 1374 1835 36 0 0 chr1 103494793 103495014 -93700418 - L1_Mm LINE L1 -639 5244 5024 7 1374 851 40 0 0 chr1 103495014 103495113 -93700319 + L1Md_F2 LINE L1 5488 5586 -297 7 1374 7961 49 2 4 chr1 103495113 103496109 -93699323 + L1Md_F2 LINE L1 5587 6580 -2 7 1374 2417 124 6 3 chr1 103496112 103496477 -93698955 + ORR1A2-int LTR MaLR 793 1158 -634 7 1374 1652 124 4 0 chr1 103496478 103496728 -93698704 + RMER16-int LTR ERVK 3039 3289 -2117 7 1374 17332 3 0 0 chr1 103497353 103500000 -93695432 - L1Md_A LINE L1 0 6582 3936 7 1374 23596 9 0 0 chr1 103500000 103503935 -93691497 - L1Md_A LINE L1 -1948 3935 1 1 1374 23 33 0 0 chr1 103503991 103504021 -93691411 + AT_rich Low_complexity Low_complexity 1 30 0 2 1374 6894 196 21 5 chr1 103504597 103505921 -93689511 - Lx4A LINE L1 -3 7055 5710 3 1374 887 198 6 0 chr1 103505923 103506090 -93689342 + Lx4A LINE L1 5537 5704 -173 3 1374 237 98 0 0 chr1 103507035 103507076 -93688356 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1374 468 0 0 0 chr1 103507352 103507404 -93688028 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 5 1374 519 139 0 0 chr1 103508764 103508865 -93686567 + (TC)n Simple_repeat Simple_repeat 2 102 0 6 1374 1277 127 0 0 chr1 103509655 103509836 -93685596 + Lx2 LINE L1 6450 6630 -367 7 1374 1342 162 4 0 chr1 103509836 103510071 -93685361 + Lx2 LINE L1 6761 6996 -1 7 1374 2849 60 0 0 chr1 103510478 103510831 -93684601 + L1Md_F2 LINE L1 5925 6277 -305 8 1374 926 217 104 130 chr1 103510841 103511020 -93684412 + RLTR25A LTR ERVK 504 692 -411 9 1374 194 0 39 0 chr1 103511020 103511046 -93684386 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1374 926 217 104 130 chr1 103511046 103511211 -93684221 + RLTR25A LTR ERVK 693 839 -264 9 1374 942 233 24 122 chr1 103511672 103512060 -93683372 + RLTR25A LTR ERVK 757 1103 0 1 1374 345 24 0 0 chr1 103512083 103512125 -93683307 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1374 936 172 0 17 chr1 103512692 103512869 -93682563 - L1_Mur1 LINE L1 -3272 2614 2441 1 1374 265 218 83 65 chr1 103513230 103513338 -93682094 - L1M3 LINE L1 -2311 3829 3720 1 1374 375 287 73 25 chr1 103513764 103514039 -93681393 - L1M3 LINE L1 -2766 3374 3087 1 1374 1151 113 36 31 chr1 103514328 103514520 -93680912 + B2_Mm2 SINE B2 2 194 -1 1 1374 1874 244 30 36 chr1 103514877 103515405 -93680027 + Lx7 LINE L1 7042 7566 -130 1 1374 570 29 0 0 chr1 103515629 103515697 -93679735 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1374 499 314 0 17 chr1 103515698 103515870 -93679562 - B3A SINE B2 -27 171 3 1 1374 2015 198 45 7 chr1 103516245 103516692 -93678740 - Lx3B LINE L1 -5 6968 6505 1 1374 367 213 22 0 chr1 103516694 103516788 -93678644 - L1_Mur1 LINE L1 -6157 825 677 2 1374 6044 215 18 35 chr1 103516813 103518949 -93676483 - Lx2 LINE L1 0 6997 4909 2 1374 9361 183 38 8 chr1 103518946 103520980 -93674452 - L1MC LINE L1 -2347 3799 1677 2 1374 320 392 34 67 chr1 103521298 103521536 -93673896 + B4 SINE B4 5 234 -58 2 1374 2061 225 104 51 chr1 103521920 103522638 -93672794 + L1_Rod LINE L1 1265 2034 -3813 2 1374 1595 182 14 78 chr1 103522638 103523073 -93672359 - RMER17C LTR ERVK -1 409 3 2 1374 2061 225 104 51 chr1 103523073 103523163 -93672269 + L1_Rod LINE L1 2035 2116 -3731 2 1374 1517 226 46 66 chr1 103523163 103523557 -93671875 + ORR1B1 LTR MaLR 5 390 -4 2 1374 990 234 77 127 chr1 103523558 103523920 -93671512 + ORR1B1-int LTR MaLR 1 344 -1165 2 1374 2315 238 15 113 chr1 103523920 103524396 -93671036 + L1_Rod LINE L1 2124 2579 -3268 2 1374 432 0 0 0 chr1 103524396 103524444 -93670988 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1374 2315 238 15 113 chr1 103524444 103524956 -93670476 + L1_Rod LINE L1 2580 3015 -2832 2 1374 332 43 22 0 chr1 103524974 103525020 -93670412 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1374 301 282 48 0 chr1 103525552 103525655 -93669777 + L1M2 LINE L1 3074 3181 -2962 2 1374 1813 205 19 20 chr1 103525673 103526104 -93669328 + L1Md_F LINE L1 675 1049 -5567 3 1374 5063 108 8 7 chr1 103526114 103526847 -93668585 - L1_Mus1 LINE L1 -1 6566 5833 3 1374 2867 97 26 7 chr1 103526869 103527286 -93668146 + L1Md_F2 LINE L1 5587 6011 -571 3 1374 5692 126 4 2 chr1 103527278 103528435 -93666997 + L1Md_F LINE L1 1037 2132 -3751 3 1374 13801 123 14 8 chr1 103528431 103530665 -93664767 + L1Md_F LINE L1 3094 5340 -543 3 1374 3786 275 61 93 chr1 103530659 103532830 -93662602 + Lx9 LINE L1 4900 7022 -622 3 1374 528 16 0 0 chr1 103532830 103532891 -93662541 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1374 3786 291 84 52 chr1 103532891 103533333 -93662099 + Lx9 LINE L1 7023 7479 -165 3 1374 321 26 0 0 chr1 103533334 103533372 -93662060 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1374 241 234 17 86 chr1 103533461 103533578 -93661854 - L1M LINE L1 -958 5386 5278 3 1374 279 307 229 0 chr1 103533803 103534008 -93661424 - MLT1F-int LTR MaLR -1028 461 210 3 1374 24 32 0 0 chr1 103534466 103534497 -93660935 + AT_rich Low_complexity Low_complexity 1 31 0 3 1374 21 0 0 0 chr1 103534741 103534762 -93660670 + AT_rich Low_complexity Low_complexity 1 21 0 3 1374 1595 181 52 103 chr1 103535781 103536187 -93659245 - RLTR41 LTR ERV1 0 446 62 4 1374 871 322 61 46 chr1 103536295 103536997 -93658435 - RLTR6-int LTR ERV1 -57 7721 7009 4 1374 1972 89 0 4 chr1 103537206 103537476 -93657956 + ORR1A1 LTR MaLR 1 269 -77 4 1374 684 247 71 74 chr1 103537459 103537826 -93657606 - RLTR41 LTR ERV1 -31 415 1 4 1374 282 87 0 0 chr1 103538243 103538289 -93657143 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1374 510 200 20 0 chr1 103538402 103538502 -93656930 - B1_Mur3 SINE Alu -7 142 41 4 1374 187 54 54 0 chr1 103539131 103539168 -93656264 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 4 1374 1016 97 7 0 chr1 103539168 103539312 -93656120 - B1_Mm SINE Alu 0 147 3 4 1374 278 324 0 13 chr1 103539878 103539953 -93655479 + MT2A LTR ERVL 346 419 -114 4 1374 194 62 31 0 chr1 103539954 103539986 -93655446 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1374 255 61 0 0 chr1 103540166 103540199 -93655233 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 5 1374 384 22 0 0 chr1 103540325 103540370 -93655062 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 1374 329 366 8 47 chr1 103540370 103540499 -93654933 - B4A SINE B4 -75 217 94 5 1374 206 128 0 25 chr1 103540743 103540783 -93654649 + CT-rich Low_complexity Low_complexity 1 39 0 5 1374 25 0 0 0 chr1 103541406 103541431 -93654001 + AT_rich Low_complexity Low_complexity 1 25 0 5 1374 252 0 0 0 chr1 103541580 103541608 -93653824 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1374 381 321 116 0 chr1 103542112 103542224 -93653208 - RSINE1 SINE B4 -30 135 11 5 1374 1947 147 16 3 chr1 103542353 103542668 -93652764 + ORR1A2 LTR MaLR 2 320 -7 5 1374 589 255 226 28 chr1 103543038 103543260 -93652172 + MT2A LTR ERVL 207 513 -88 5 1374 196 215 0 48 chr1 103543299 103543382 -93652050 + CT-rich Low_complexity Low_complexity 2 80 0 5 1374 257 250 52 93 chr1 103543504 103543601 -93651831 + MTEa LTR MaLR 287 379 0 6 1374 22 0 0 0 chr1 103544502 103544524 -93650908 + AT_rich Low_complexity Low_complexity 1 22 0 6 1374 204 40 0 0 chr1 103544552 103544577 -93650855 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1374 3431 20 5 0 chr1 103544832 103545226 -93650206 + MTA_Mm LTR MaLR 1 396 0 6 1374 552 311 54 72 chr1 103545483 103545760 -93649672 + RMER20B LTR ERVK 97 368 -259 6 1374 376 323 10 0 chr1 103546549 103546645 -93648787 + RSINE1 SINE B4 3 99 -66 6 171 901 111 144 30 chr1 103546719 103546900 -93648532 + RMER17C-int LTR ERVK 2533 2722 -516 6 1375 1616 194 135 13 chr1 103546905 103547291 -93648141 + RMER17C-int LTR ERVK 2806 3238 0 6 1375 1094 141 35 58 chr1 103547293 103547614 -93647818 + RMER17B LTR ERVK 16 439 -519 6 1375 221 169 59 24 chr1 103548133 103548218 -93647214 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 6 1375 3242 202 67 56 chr1 103548415 103549156 -93646276 - RMER13B LTR ERVK -3 857 93 6 1375 4010 178 122 72 chr1 103549156 103550130 -93645302 - RLTR13D2 LTR ERVK 0 1023 1 7 1375 3242 197 57 55 chr1 103550130 103550237 -93645195 - RMER13B LTR ERVK -816 92 1 6 1375 261 0 0 0 chr1 103550711 103550740 -93644692 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1375 953 228 35 49 chr1 103550763 103550966 -93644466 + B3 SINE B2 12 211 -5 7 1375 247 364 45 38 chr1 103550983 103551140 -93644292 - RSINE1 SINE B4 -6 159 2 7 1375 715 321 91 21 chr1 103551186 103551616 -93643816 + L1MD2 LINE L1 2835 3294 -2852 7 1375 314 302 80 4 chr1 103552252 103552437 -93642995 + L1MD2 LINE L1 5665 5859 -500 7 1375 4158 150 1 0 chr1 103552603 103553281 -93642151 + Lx2 LINE L1 6319 6997 0 7 1375 558 0 0 0 chr1 103553405 103553467 -93641965 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1375 35 0 0 0 chr1 103553911 103553946 -93641486 + AT_rich Low_complexity Low_complexity 1 35 0 7 1375 1482 65 0 0 chr1 103554320 103554521 -93640911 - L1Md_F2 LINE L1 -1 6581 6381 7 1375 1235 193 27 33 chr1 103555997 103556329 -93639103 + L1_Mur2 LINE L1 3836 4165 -1712 7 1375 2413 230 37 9 chr1 103556329 103556873 -93638559 + RLTR20B2 LTR ERVK 1 559 -1 8 1375 1889 219 85 32 chr1 103556950 103557445 -93637987 - RMER13B LTR ERVK -52 856 336 8 1375 305 281 29 17 chr1 103557694 103557826 -93637606 + ORR1E LTR MaLR 34 207 -152 8 1375 870 179 80 11 chr1 103557836 103558011 -93637421 - Lx4A LINE L1 -3 7055 6869 8 1375 1121 194 8 12 chr1 103558014 103558260 -93637172 - ORR1A4-int LTR MaLR -922 1041 797 8 1375 950 213 25 106 chr1 103558284 103558567 -93636865 - MT2B LTR ERVL -310 291 32 8 1375 2951 249 19 28 chr1 103558362 103559155 -93636277 - ORR1A4-int LTR MaLR -1163 800 15 8 1375 1396 199 89 3 chr1 103559179 103559482 -93635950 - ORR1A4 LTR MaLR 0 329 1 8 1375 310 393 86 16 chr1 103559482 103559578 -93635854 - B4A SINE B4 -89 203 108 8 1375 492 62 0 0 chr1 103559578 103559642 -93635790 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1375 310 393 86 16 chr1 103559642 103559731 -93635701 - B4A SINE B4 -185 107 7 8 1375 478 304 9 9 chr1 103560193 103560306 -93635126 - RSINE1 SINE B4 -22 143 31 8 1375 7301 78 3 1 chr1 103560757 103561749 -93633683 - L1_Mm LINE L1 -782 5101 4108 8 1375 607 102 0 36 chr1 103561749 103561861 -93633571 + L1Md_F2 LINE L1 6462 6569 -13 9 1375 218 95 24 0 chr1 103562023 103562065 -93633367 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 1375 33996 91 2 12 chr1 103562068 103568636 -93626796 - L1Md_F2 LINE L1 -2 6580 98 9 1375 283 277 20 10 chr1 103568624 103568726 -93626706 - L1VL1 LINE L1 -6319 103 1 9 1375 386 248 73 24 chr1 103569023 103569147 -93626285 - MTE2a LTR MaLR -3 416 287 9 1375 408 318 121 7 chr1 103569148 103569297 -93626135 - MTE2a LTR MaLR -213 166 1 9 1375 861 179 40 6 chr1 103569348 103569522 -93625910 - B2_Mm2 SINE B2 -13 182 3 9 1375 1142 291 58 8 chr1 103569645 103570029 -93625403 + MTD LTR MaLR 13 405 -14 9 1375 405 0 0 0 chr1 103570213 103570258 -93625174 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1375 287 387 78 86 chr1 103570401 103570644 -93624788 + B4 SINE B4 50 290 -2 9 1375 202 204 0 0 chr1 103570672 103570716 -93624716 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1375 343 274 55 37 chr1 103571130 103571293 -93624139 - Tigger7 DNA MER2_type -50 2441 2276 1 1375 24 32 0 0 chr1 103571303 103571334 -93624098 + AT_rich Low_complexity Low_complexity 1 31 0 1 1375 232 245 21 21 chr1 103571553 103571649 -93623783 + L1_Rod LINE L1 5737 5832 -15 1 1375 263 71 24 0 chr1 103571940 103571982 -93623450 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1375 999 138 0 0 chr1 103571982 103572120 -93623312 - B1_Mus1 SINE Alu -9 139 2 1 1375 448 292 77 6 chr1 103572156 103572325 -93623107 - Lx6 LINE L1 -177 7283 7103 1 1375 3134 232 47 26 chr1 103572375 103572514 -93622918 - L1_Mur3 LINE L1 -394 5486 5353 1 1375 384 0 54 0 chr1 103572514 103572570 -93622862 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1375 1061 82 0 0 chr1 103572572 103572707 -93622725 - B1_Mus1 SINE Alu -12 136 2 1 1375 3134 232 47 26 chr1 103572707 103573400 -93622032 - L1_Mur3 LINE L1 -528 5352 4630 1 1375 438 20 0 0 chr1 103573400 103573451 -93621981 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1375 3134 232 47 26 chr1 103573451 103573545 -93621887 - L1_Mur3 LINE L1 -1251 4629 4536 1 1375 5844 220 64 23 chr1 103573549 103575252 -93620180 + L1_Mur3 LINE L1 2728 4500 -1380 1 1375 3207 48 5 5 chr1 103575348 103575744 -93619688 + MTA_Mm LTR MaLR 1 396 0 1 1375 3628 224 41 40 chr1 103576194 103577076 -93618356 + RLTR25A LTR ERVK 3 885 -218 1 1375 546 140 0 0 chr1 103577090 103577190 -93618242 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1375 641 235 202 15 chr1 103577214 103577417 -93618015 + RLTR25B LTR ERVK 788 1028 0 1 1375 286 393 10 10 chr1 103577435 103577633 -93617799 - Lx8 LINE L1 -249 7224 7027 1 1375 480 329 54 12 chr1 103578557 103578723 -93616709 + B3A SINE B2 4 176 -22 1 1375 189 0 0 0 chr1 103578724 103578745 -93616687 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1375 456 51 0 0 chr1 103578745 103578803 -93616629 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1375 24 32 0 0 chr1 103579201 103579232 -93616200 + AT_rich Low_complexity Low_complexity 1 31 0 1 1375 385 263 29 36 chr1 103579374 103579512 -93615920 + Lx9 LINE L1 7201 7337 -307 1 1375 605 321 19 5 chr1 103579558 103579771 -93615661 + Lx8 LINE L1 6893 7108 -365 1 1375 291 28 0 0 chr1 103579775 103579811 -93615621 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 1 1375 266 324 9 46 chr1 103579856 103580079 -93615353 + GA-rich Low_complexity Low_complexity 1 214 0 1 1375 259 0 71 24 chr1 103580162 103580204 -93615228 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1 1375 230 0 33 0 chr1 103580317 103580347 -93615085 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1375 686 348 53 18 chr1 103580997 103581278 -93614154 - B4A SINE B4 0 292 2 1 1375 182 62 31 0 chr1 103581771 103581803 -93613629 + (TTATA)n Simple_repeat Simple_repeat 2 34 0 1 1375 359 186 46 40 chr1 103581923 103582142 -93613290 + (TATAA)n Simple_repeat Simple_repeat 1 220 0 1 1375 40 73 0 0 chr1 103582173 103582255 -93613177 + AT_rich Low_complexity Low_complexity 1 82 0 1 1375 22 80 0 0 chr1 103582495 103582545 -93612887 + AT_rich Low_complexity Low_complexity 1 50 0 1 1375 1041 88 0 0 chr1 103583039 103583175 -93612257 + B1_Mus1 SINE Alu 1 136 -12 1 1375 1080 81 0 0 chr1 103583177 103583325 -93612107 + (CAAAA)n Simple_repeat Simple_repeat 2 149 0 1 1375 399 56 0 0 chr1 103583466 103583520 -93611912 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1375 1289 56 0 0 chr1 103585404 103585564 -93609868 + B2_Mm1t SINE B2 1 160 -33 1 1375 402 21 0 0 chr1 103585564 103585611 -93609821 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1375 1132 144 5 15 chr1 103585611 103585647 -93609785 + B2_Mm2 SINE B2 159 195 0 1 1375 352 255 195 54 chr1 103586128 103586257 -93609175 - ID_B1 SINE B4 -52 172 22 1 1375 1937 140 10 10 chr1 103586257 103586568 -93608864 - RLTR10E LTR ERVK 0 311 1 1 1375 352 255 195 54 chr1 103586568 103586587 -93608845 - ID SINE ID -203 21 3 1 1375 25 0 0 0 chr1 103586770 103586795 -93608637 + AT_rich Low_complexity Low_complexity 1 25 0 1 1375 238 310 112 21 chr1 103587007 103587195 -93608237 - HAL1 LINE L1 -856 1651 1447 1 1375 1751 95 42 11 chr1 103587325 103587590 -93607842 - L1_Mus1 LINE L1 0 6567 6295 1 1375 859 309 47 87 chr1 103587718 103588246 -93607186 + Lx8 LINE L1 6962 7468 -5 1 1375 785 339 47 13 chr1 103588279 103588578 -93606854 - ORR1E LTR MaLR -49 310 2 1 1375 930 128 0 13 chr1 103589119 103589269 -93606163 - B1_Mus1 SINE Alu 0 148 1 1 1375 21 36 0 0 chr1 103589717 103589745 -93605687 + AT_rich Low_complexity Low_complexity 1 28 0 1 1375 229 233 27 27 chr1 103589935 103590010 -93605422 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 1 1375 446 275 21 42 chr1 103590534 103590678 -93604754 - RLTR22_Mur LTR ERVK 0 1848 1708 1 1375 1774 175 21 15 chr1 103590678 103591003 -93604429 + ORR1A2 LTR MaLR 1 327 0 1 1375 255 206 39 64 chr1 103591008 103591086 -93604346 - RLTR22_Mur LTR ERVK -140 1708 1633 1 1375 561 80 0 0 chr1 103591086 103591174 -93604258 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1375 339 44 0 0 chr1 103591174 103591219 -93604213 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1375 3307 254 88 39 chr1 103591219 103592278 -93603154 - RMER12 LTR ERVK -208 1114 4 1 1375 273 75 0 0 chr1 103593966 103594006 -93601426 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1375 375 78 0 0 chr1 103594107 103594158 -93601274 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1375 1931 289 41 4 chr1 103594261 103594819 -93600613 - Lx5 LINE L1 -18 7032 6454 1 1375 21 36 0 0 chr1 103595485 103595513 -93599919 + AT_rich Low_complexity Low_complexity 1 28 0 1 1375 369 0 0 0 chr1 103595547 103595588 -93599844 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1375 24 0 0 0 chr1 103595588 103595612 -93599820 + AT_rich Low_complexity Low_complexity 1 24 0 1 1375 262 359 11 11 chr1 103596217 103596310 -93599122 + B4A SINE B4 194 286 -6 1 1375 1071 38 0 0 chr1 103596344 103596476 -93598956 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 1375 1195 116 92 0 chr1 103596690 103596897 -93598535 - L1_Mus4 LINE L1 -637 5999 5774 1 1375 1233 234 19 11 chr1 103596902 103597162 -93598270 - ORR1B2 LTR MaLR -105 262 1 1 1375 4222 241 52 32 chr1 103597163 103598364 -93597068 - ORR1B2-int LTR MaLR -1 1508 283 1 1375 22 35 0 0 chr1 103598389 103598418 -93597014 + AT_rich Low_complexity Low_complexity 1 29 0 1 1375 3132 256 44 55 chr1 103598428 103599338 -93596094 - Lx5 LINE L1 -3 7047 6148 1 1375 2251 187 150 2 chr1 103599355 103599922 -93595510 - L1_Mur2 LINE L1 -3130 2747 2097 1 1375 195 69 0 0 chr1 103599964 103599993 -93595439 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1375 189 26 0 73 chr1 103600696 103600737 -93594695 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1375 666 167 26 20 chr1 103600737 103600890 -93594542 - Lx3A LINE L1 -1 6980 6827 1 1375 30127 85 4 13 chr1 103600926 103605586 -93589846 - L1Md_F2 LINE L1 -12 6570 1962 1 1375 288 0 0 0 chr1 103605586 103605618 -93589814 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1375 30127 89 5 16 chr1 103605618 103606039 -93589393 - L1Md_F2 LINE L1 -3922 1961 1540 1 1375 526 291 47 16 chr1 103606040 103606169 -93589263 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1375 4531 145 62 7 chr1 103606555 103607781 -93587651 - L1Md_F LINE L1 -4338 1545 273 1 1375 30155 77 6 3 chr1 103607787 103613775 -93581657 + L1Md_F2 LINE L1 514 6585 0 1 1375 349 86 14 28 chr1 103613786 103613858 -93581574 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 1 1375 4639 145 38 2 chr1 103613862 103614705 -93580727 - L1_Mur1 LINE L1 -1224 4662 3790 1 1375 3162 162 154 174 chr1 103614702 103615785 -93579647 - L1_Mur1 LINE L1 -5914 1070 10 1 1375 387 0 0 0 chr1 103616591 103616634 -93578798 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1375 2740 90 16 3 chr1 103616634 103617013 -93578419 - L1_Mus1 LINE L1 -13 6554 6171 1 1375 415 384 42 35 chr1 103618018 103618307 -93577125 - B4A SINE B4 0 292 2 1 1375 1991 262 77 22 chr1 103618993 103619527 -93575905 + RLTR20B1 LTR ERVK 1 563 0 1 1375 506 308 7 0 chr1 103619680 103619823 -93575609 - Lx5 LINE L1 -400 6650 6507 1 1375 2630 224 73 11 chr1 103619839 103620518 -93574914 - Lx6 LINE L1 -397 5776 5028 1 1375 342 261 34 0 chr1 103620519 103620607 -93574825 - MTD LTR MaLR -328 91 1 1 1375 807 325 86 72 chr1 103620609 103621176 -93574256 + Tigger1 DNA MER2_type 82 656 -1762 1 1375 634 302 44 13 chr1 103621294 103621519 -93573913 + Tigger1 DNA MER2_type 976 1207 -1211 1 1375 503 354 100 14 chr1 103621572 103621861 -93573571 - MTE2a LTR MaLR -3 376 63 1 1375 9983 194 7 14 chr1 103621944 103624360 -93571072 - MusHAL1 LINE L1 -577 2776 381 1 1375 28 61 0 0 chr1 103624386 103624435 -93570997 + AT_rich Low_complexity Low_complexity 1 49 0 1 1375 321 247 12 0 chr1 103624464 103624545 -93570887 - L1VL4 LINE L1 -5711 591 510 1 1375 1022 169 69 127 chr1 103624743 103625034 -93570398 - RMER17A2 LTR ERVK 0 906 633 1 1375 457 184 10 10 chr1 103625093 103625192 -93570240 + Lx LINE L1 6540 6638 -16 1 1375 5417 85 16 16 chr1 103625305 103626081 -93569351 - L1_Mus2 LINE L1 0 6566 5791 1 1375 487 276 65 13 chr1 103626231 103626385 -93569047 + RSINE1 SINE B4 3 164 -1 1 1375 1219 171 37 178 chr1 103626392 103626848 -93568584 + RMER17D2 LTR ERVK 406 797 -12 1 1375 6679 142 5 3 chr1 103626946 103628373 -93567059 - L1_Mus4 LINE L1 -4 6632 5207 1 1375 286 95 47 16 chr1 103628372 103628436 -93566996 + L1_Mus3 LINE L1 6569 6634 -4 1 1375 643 326 117 29 chr1 103628558 103628899 -93566533 - MTEa LTR MaLR -8 371 1 1 1375 770 175 7 0 chr1 103629269 103629412 -93566020 - URR1A DNA MER1_type -1 225 82 1 1375 406 189 19 0 chr1 103629483 103629589 -93565843 + CT-rich Low_complexity Low_complexity 3 110 0 1 1375 312 335 60 28 chr1 103629591 103629806 -93565626 - ID_B1 SINE B4 -1 223 2 1 1375 1583 16 0 21 chr1 103630020 103630207 -93565225 + B2_Mm1a SINE B2 4 186 -7 1 1375 189 0 0 0 chr1 103630333 103630354 -93565078 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1375 226 175 75 0 chr1 103630449 103630489 -93564943 + ID2 SINE ID 3 45 -38 1 1375 23 0 0 0 chr1 103630711 103630734 -93564698 + AT_rich Low_complexity Low_complexity 1 23 0 2 1375 1214 292 80 13 chr1 103631428 103631803 -93563629 + MTD LTR MaLR 6 405 -14 2 1375 1347 254 131 80 chr1 103632048 103632789 -93562643 + RMER17B LTR ERVK 5 783 -125 2 1375 486 0 0 0 chr1 103632887 103632941 -93562491 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1375 433 327 77 32 chr1 103633325 103633480 -93561952 - ORR1E LTR MaLR -193 166 5 2 1375 12421 199 130 23 chr1 103633533 103636709 -93558723 + L1VL4 LINE L1 545 4136 -1750 2 1375 477 0 0 0 chr1 103636709 103636762 -93558670 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1375 12421 188 157 11 chr1 103636762 103637276 -93558156 + L1VL4 LINE L1 4137 4654 -1232 2 1375 4065 160 88 14 chr1 103637288 103638119 -93557313 - RMER17A2 LTR ERVK -11 895 4 2 1375 7492 128 10 12 chr1 103638120 103640047 -93555385 + L1_Mus2 LINE L1 4643 6566 0 2 1375 315 0 0 0 chr1 103640093 103640128 -93555304 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1375 266 359 57 0 chr1 103640412 103640518 -93554914 - B4A SINE B4 -179 113 2 2 1375 1316 172 150 33 chr1 103640681 103641047 -93554385 - RLTR9E LTR ERVK 0 409 1 2 1375 750 23 0 0 chr1 103641752 103641840 -93553592 + (TC)n Simple_repeat Simple_repeat 2 89 0 2 1375 590 374 48 26 chr1 103641882 103642154 -93553278 - B4A SINE B4 -12 280 3 2 1375 270 0 0 0 chr1 103643597 103643627 -93551805 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1375 950 263 60 108 chr1 103643714 103644029 -93551403 + MTEa LTR MaLR 80 379 0 2 1375 1007 117 0 0 chr1 103644263 103644400 -93551032 + B1_Mus1 SINE Alu 1 137 -11 2 1375 378 0 0 0 chr1 103644400 103644442 -93550990 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1375 21 0 0 0 chr1 103644946 103644967 -93550465 + AT_rich Low_complexity Low_complexity 1 21 0 2 1375 645 14 0 0 chr1 103644976 103645050 -93550382 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1375 1966 340 40 37 chr1 103645061 103646132 -93549300 + Lx9 LINE L1 6358 7431 -213 2 1375 657 266 85 25 chr1 103647438 103647673 -93547759 + Lx8 LINE L1 6791 7039 -434 2 1375 220 229 28 28 chr1 103647877 103647949 -93547483 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 2 1375 306 190 93 23 chr1 103648638 103648724 -93546708 - MLT1A1 LTR MaLR -29 379 288 2 1375 192 40 0 0 chr1 103648899 103648924 -93546508 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1375 1008 117 0 0 chr1 103648924 103649061 -93546371 - B1_Mus2 SINE Alu -9 138 2 2 1375 330 301 43 117 chr1 103649152 103649314 -93546118 + MTE2a LTR MaLR 14 163 -216 2 1375 468 35 0 0 chr1 103649399 103649457 -93545975 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1375 248 305 0 0 chr1 103649486 103649568 -93545864 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1375 401 214 11 33 chr1 103649669 103649853 -93545579 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1375 821 225 188 14 chr1 103649899 103650350 -93545082 - L1_Rod LINE L1 -565 5609 5021 2 1375 7519 87 10 5 chr1 103651147 103652644 -93542788 - L1_Mus1 LINE L1 0 6567 5068 2 1375 598 236 110 14 chr1 103652649 103652795 -93542637 - MTC LTR MaLR -261 160 1 2 1375 309 158 37 0 chr1 103652811 103652893 -93542539 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1375 372 233 137 15 chr1 103652895 103653026 -93542406 - L1_Rod LINE L1 -1183 4664 4518 2 1375 2397 118 48 18 chr1 103653034 103653431 -93542001 - RLTR9E LTR ERVK 0 409 1 2 1375 458 107 0 13 chr1 103653432 103653508 -93541924 - RMER16-int LTR ERVK -1 7405 7331 2 1375 1182 197 14 0 chr1 103653711 103653924 -93541508 - RMER16-int LTR ERVK -969 6437 6222 2 1375 1872 199 22 45 chr1 103653972 103654663 -93540769 - RMER16-int LTR ERVK -1230 4176 3611 2 1375 551 200 116 24 chr1 103654671 103654835 -93540597 - L1_Mur3 LINE L1 -1358 4522 4344 2 1375 458 196 0 0 chr1 103654850 103654942 -93540490 + ORR1A2 LTR MaLR 1 92 -235 2 1375 37867 30 0 0 chr1 103654948 103661349 -93534083 - L1Md_T LINE L1 0 6585 86 2 1375 1423 151 35 0 chr1 103661350 103661582 -93533850 + ORR1A2 LTR MaLR 80 319 -8 2 1375 1264 241 75 31 chr1 103661589 103661978 -93533454 - L1_Rod LINE L1 -1515 4332 3927 2 1375 184 145 0 92 chr1 103662798 103662874 -93532558 + T-rich Low_complexity Low_complexity 1 69 0 2 1375 576 347 59 65 chr1 103663094 103663415 -93532017 + ORR1E LTR MaLR 1 319 -40 2 1375 560 365 37 68 chr1 103663567 103663949 -93531483 + ORR1D2 LTR MaLR 1 370 0 2 1375 2725 214 2 0 chr1 103664479 103664966 -93530466 + L1VL4 LINE L1 7 494 -5808 2 1375 2304 83 20 93 chr1 103665000 103665398 -93530034 - L1_Mus2 LINE L1 -1 6565 6197 2 1375 9846 143 14 15 chr1 103665403 103666867 -93528565 + L1VL4 LINE L1 216 1680 -1879 2 1375 959 130 7 7 chr1 103666867 103667014 -93528418 + B1_Mm SINE Alu 1 147 0 2 1375 12799 134 22 18 chr1 103667014 103668527 -93526905 + L1VL4 LINE L1 1681 3198 -361 2 1375 3943 119 2 18 chr1 103668527 103669128 -93526304 - RLTR13D2 LTR ERVK 0 1023 433 2 1375 2574 192 0 4 chr1 103669128 103669625 -93525807 + L1_Mm LINE L1 4498 4992 -891 2 1375 1146 294 47 21 chr1 103669625 103670084 -93525348 - MERVL_2A-int LTR ERVL -560 5201 4714 2 1375 923 289 36 16 chr1 103670158 103670467 -93524965 + ORR1D2 LTR MaLR 1 317 -53 2 1375 636 14 0 0 chr1 103670467 103670540 -93524892 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1375 923 289 36 16 chr1 103670540 103670593 -93524839 + ORR1D2 LTR MaLR 318 369 -1 2 1375 265 178 0 27 chr1 103670623 103670733 -93524699 + A-rich Low_complexity Low_complexity 3 109 0 2 1375 350 224 0 0 chr1 103670734 103670801 -93524631 - Lx9 LINE L1 -620 7024 6958 2 1375 9326 22 0 2 chr1 103670841 103671960 -93523472 - L1_Mm LINE L1 -1850 4033 2917 2 1375 1135 224 9 161 chr1 103672218 103672542 -93522890 + RMER19B LTR ERVK 1 275 -627 2 1375 21962 82 5 3 chr1 103672542 103675609 -93519823 - L1Md_F LINE L1 -1560 4323 1250 2 1375 270 95 24 0 chr1 103675609 103675651 -93519781 - L1Md_F LINE L1 -6109 507 465 2 1375 7157 175 18 9 chr1 103675652 103677378 -93518054 - Lx2 LINE L1 -1 6996 5253 2 1375 2687 128 39 7 chr1 103677378 103677812 -93517620 + L1_Mus3 LINE L1 6186 6633 -5 2 1375 3698 155 11 8 chr1 103677812 103677828 -93517604 - Lx2 LINE L1 -631 5252 5239 2 171 315 317 62 57 chr1 103677828 103678022 -93517410 - L1M4c LINE L1 -4993 1391 1197 2 1376 970 213 66 16 chr1 103678746 103679003 -93516429 - L1_Mur3 LINE L1 -3423 2457 2188 2 1376 531 0 0 0 chr1 103680262 103680321 -93515111 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1376 855 162 0 21 chr1 103680321 103680466 -93514966 - B1_Mus2 SINE Alu -3 144 3 2 1376 340 250 9 103 chr1 103680363 103680479 -93514953 - MT2B LTR ERVL -344 257 153 2 1376 995 116 7 0 chr1 103680630 103680777 -93514655 - B1_Mus1 SINE Alu 0 148 1 2 1376 6527 139 49 2 chr1 103680790 103682181 -93513251 + L1_Mus4 LINE L1 5157 6629 -7 2 1376 407 277 46 10 chr1 103682433 103682630 -93512802 - L1M4 LINE L1 -372 5806 5603 2 1376 474 342 43 104 chr1 103682733 103683147 -93512285 + RMER10A LTR ERVL 29 417 -25 2 1376 355 355 66 0 chr1 103683330 103683527 -93511905 + B3 SINE B2 1 210 -6 2 1376 6876 67 15 6 chr1 103683563 103684476 -93510956 + L1Md_F2 LINE L1 5658 6579 -3 2 1376 180 77 0 0 chr1 103684486 103684512 -93510920 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1376 214 391 85 75 chr1 103684823 103685011 -93510421 + B4A SINE B4 47 236 -56 2 1376 420 130 0 0 chr1 103685068 103685137 -93510295 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1376 960 326 65 0 chr1 103685394 103685673 -93509759 + MTEa LTR MaLR 83 379 0 2 1376 285 29 0 0 chr1 103685871 103685905 -93509527 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1376 783 270 88 32 chr1 103686471 103686671 -93508761 + MTD LTR MaLR 28 241 -178 2 1376 563 261 82 60 chr1 103686671 103687099 -93508333 + RMER17C LTR ERVK 1 377 -33 2 1376 595 285 66 13 chr1 103687103 103687304 -93508128 + MTD LTR MaLR 159 406 -13 2 1376 483 107 0 0 chr1 103688048 103688123 -93507309 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1376 646 314 52 26 chr1 103688126 103688397 -93507035 + B4A SINE B4 1 278 -14 2 1376 229 254 15 80 chr1 103689359 103689470 -93505962 + (CATATA)n Simple_repeat Simple_repeat 1 103 0 2 1376 294 29 0 0 chr1 103689470 103689505 -93505927 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1376 248 274 12 12 chr1 103689505 103689590 -93505842 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1376 601 194 6 6 chr1 103690312 103690488 -93504944 + CT-rich Low_complexity Low_complexity 1 176 0 2 1376 1581 349 75 25 chr1 103690494 103691665 -93503767 - Lx8 LINE L1 -396 7300 6064 2 1376 594 322 46 58 chr1 103691767 103692008 -93503424 - MTE2a LTR MaLR -17 362 125 2 1376 398 282 21 83 chr1 103692675 103692868 -93502564 - B3A SINE B2 0 198 18 2 1376 321 26 0 0 chr1 103693187 103693225 -93502207 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2 1376 597 278 0 0 chr1 103693225 103693351 -93502081 - B1_Mm SINE Alu -13 134 9 2 1376 590 300 40 55 chr1 103693382 103693583 -93501849 - B3A SINE B2 0 198 1 2 1376 231 36 0 0 chr1 103693638 103693666 -93501766 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1376 324 0 0 0 chr1 103693666 103693702 -93501730 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1376 238 288 39 52 chr1 103694342 103694419 -93501013 - B4A SINE B4 -4 288 213 2 1376 381 304 0 0 chr1 103694487 103694589 -93500843 - B3A SINE B2 -95 103 2 2 1376 724 349 23 9 chr1 103694643 103694857 -93500575 - B4A SINE B4 -74 218 2 2 1376 188 86 29 0 chr1 103695049 103695084 -93500348 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1376 1733 187 100 3 chr1 103696376 103696725 -93498707 - MT2C_Mm LTR ERVL 0 475 93 2 1376 393 39 0 0 chr1 103696727 103696778 -93498654 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1376 380 107 0 26 chr1 103696781 103696858 -93498574 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 2 1376 3985 159 38 51 chr1 103697256 103697964 -93497468 - ETnERV2-int LTR ERVK -214 7192 6494 2 1376 1144 284 84 8 chr1 103697995 103698378 -93497054 - RNERVK23-int LTR ERVK -391 7826 7415 2 1376 619 338 42 42 chr1 103698112 103698563 -93496869 - RLTR6-int LTR ERV1 -177 7601 7151 2 1376 274 309 17 57 chr1 103698761 103698991 -93496441 - RLTR45-int LTR ERVK -5626 1618 1398 2 1376 859 163 72 16 chr1 103699288 103699481 -93495951 - RLTR45-int LTR ERVK -2369 4875 4672 2 1376 3022 79 2 0 chr1 103699469 103699875 -93495557 - ETnERV2-int LTR ERVK -1644 5762 5356 2 1376 10191 155 36 28 chr1 103699873 103701896 -93493536 - ETnERV2-int LTR ERVK -2727 4679 2935 2 1376 314 100 0 39 chr1 103701916 103701968 -93493464 - RMER16-int LTR ERVK -5077 1060 1011 3 1376 2142 176 132 31 chr1 103701996 103702513 -93492919 - RMER16-int LTR ERVK -4587 819 251 3 1376 657 193 32 32 chr1 103703418 103703541 -93491891 - ETnERV2-int LTR ERVK -214 7192 7070 3 1376 352 319 161 26 chr1 103703549 103703742 -93491690 + B4A SINE B4 15 233 -59 3 1376 508 151 19 19 chr1 103703799 103703907 -93491525 + (CATATA)n Simple_repeat Simple_repeat 6 113 0 3 1376 314 276 31 16 chr1 103703921 103704050 -93491382 + L1MA6 LINE L1 5781 5911 -389 3 1376 339 44 0 0 chr1 103704076 103704121 -93491311 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1376 486 0 0 0 chr1 103704121 103704174 -93491258 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1376 30 59 0 0 chr1 103704488 103704539 -93490893 + AT_rich Low_complexity Low_complexity 1 51 0 3 1376 4558 214 68 42 chr1 103705089 103706303 -93489129 - Lx2 LINE L1 -10 6987 5742 3 1376 371 340 9 0 chr1 103707410 103707516 -93487916 + RSINE1 SINE B4 20 126 -39 3 1376 707 50 10 0 chr1 103707541 103707641 -93487791 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 1376 473 370 0 36 chr1 103707917 103708085 -93487347 + RSINE1 SINE B4 4 165 0 3 1376 643 151 6 6 chr1 103708147 103708307 -93487125 + (TA)n Simple_repeat Simple_repeat 1 160 0 3 1376 402 79 0 0 chr1 103708306 103708369 -93487063 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1376 3935 32 0 2 chr1 103708730 103709275 -93486157 - L1Md_F3 LINE L1 -534 6050 5507 3 1376 4422 51 5 5 chr1 103709276 103709872 -93485560 + L1Md_F3 LINE L1 6026 6584 0 3 1376 8786 150 12 8 chr1 103709884 103713098 -93482334 + L1VL4 LINE L1 368 4382 -1495 3 1376 397 368 5 5 chr1 103713223 103713409 -93482023 - B3A SINE B2 -12 186 1 3 1376 363 317 28 7 chr1 103713562 103713705 -93481727 + B1_Mur4 SINE Alu 5 150 0 3 1376 470 367 42 25 chr1 103714617 103714902 -93480530 - B4A SINE B4 0 292 3 3 1376 335 301 95 74 chr1 103715223 103715413 -93480019 + B3A SINE B2 1 194 -4 3 1376 234 0 0 0 chr1 103715594 103715620 -93479812 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1376 320 41 20 20 chr1 103715631 103715681 -93479751 - B1_Mur4 SINE Alu 0 150 101 3 1376 540 323 12 23 chr1 103715681 103715852 -93479580 - B4A SINE B4 -74 218 50 3 1376 230 73 0 24 chr1 103715923 103715965 -93479467 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 3 1376 371 291 13 33 chr1 103716063 103716216 -93479216 + (TATATG)n Simple_repeat Simple_repeat 4 153 0 3 1376 225 132 0 0 chr1 103716775 103716813 -93478619 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1376 3732 244 26 65 chr1 103717075 103718014 -93477418 - RMER19B LTR ERVK 0 902 1 3 1376 295 363 71 95 chr1 103718416 103718626 -93476806 + B4 SINE B4 72 276 -16 3 1376 325 400 40 15 chr1 103719613 103719887 -93475545 + B4A SINE B4 2 282 -10 3 1376 523 173 14 0 chr1 103719905 103720044 -93475388 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 1376 368 362 19 63 chr1 103720072 103720231 -93475201 + RSINE1 SINE B4 1 152 -13 3 1376 5048 138 68 33 chr1 103721420 103722303 -93473129 + Lx2 LINE L1 6084 6997 0 3 1376 189 0 0 0 chr1 103722754 103722775 -93472657 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1376 668 145 0 7 chr1 103722806 103722833 -93472599 + polypyrimidine Low_complexity Low_complexity 114 140 0 3 1376 1412 44 0 6 chr1 103722833 103723014 -93472418 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1376 668 145 0 7 chr1 103723014 103723125 -93472307 + CT-rich Low_complexity Low_complexity 4 113 0 3 1376 1068 128 0 0 chr1 103723127 103723306 -93472126 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1376 814 177 88 0 chr1 103723306 103723417 -93472015 - Lx LINE L1 -8 6646 6521 3 1376 180 0 0 0 chr1 103723417 103723437 -93471995 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 3 1376 814 177 88 0 chr1 103723437 103723506 -93471926 - Lx LINE L1 -134 6520 6451 3 1376 1318 286 70 16 chr1 103723506 103723879 -93471553 - MTD LTR MaLR -26 393 1 3 1376 755 254 71 24 chr1 103724246 103724456 -93470976 - MTD LTR MaLR -8 411 192 3 1376 441 0 0 0 chr1 103724516 103724565 -93470867 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1376 372 156 0 0 chr1 103724565 103724655 -93470777 + GA-rich Low_complexity Low_complexity 1 90 0 3 1376 413 301 60 56 chr1 103724764 103725299 -93470133 + L1M3 LINE L1 2120 2656 -3484 3 1376 301 291 120 12 chr1 103725929 103726096 -93469336 + L1MB3 LINE L1 5951 6135 -48 3 1376 1749 118 11 4 chr1 103726196 103726467 -93468965 + L1_Mus3 LINE L1 6366 6638 0 3 1376 10465 52 1 0 chr1 103726479 103727938 -93467494 - L1Md_F2 LINE L1 -546 6038 4579 3 1376 4203 66 7 2 chr1 103727938 103728485 -93466947 + L1Md_F2 LINE L1 6032 6581 -1 3 1376 23 33 0 0 chr1 103728524 103728554 -93466878 + AT_rich Low_complexity Low_complexity 1 30 0 3 1376 342 0 0 0 chr1 103729615 103729653 -93465779 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1376 360 0 0 0 chr1 103730059 103730099 -93465333 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 1376 1155 53 231 31 chr1 103731262 103731457 -93463975 - Lx3_Mus LINE L1 0 7009 6776 3 1376 381 371 32 23 chr1 103731457 103731675 -93463757 + MER74A LTR ERVL 123 342 -216 3 1376 3574 118 166 78 chr1 103731740 103732557 -93462875 - RMER17D LTR ERVK 0 889 1 3 1376 215 382 98 68 chr1 103732607 103732812 -93462620 + B4 SINE B4 68 278 -14 3 1376 1061 258 90 69 chr1 103732830 103733176 -93462256 - ORR1D2 LTR MaLR -16 354 2 3 1376 303 237 0 0 chr1 103733188 103733281 -93462151 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1376 225 295 0 25 chr1 103733302 103733382 -93462050 + (CATA)n Simple_repeat Simple_repeat 1 78 0 3 1376 396 0 0 0 chr1 103733384 103733428 -93462004 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1376 26 30 0 0 chr1 103733809 103733842 -93461590 + AT_rich Low_complexity Low_complexity 1 33 0 3 1376 370 283 29 29 chr1 103734225 103734327 -93461105 - PB1D10 SINE Alu -7 110 9 3 1376 807 303 90 33 chr1 103734586 103734985 -93460447 + Lx8 LINE L1 6923 7344 -129 3 1376 379 316 110 32 chr1 103735042 103735196 -93460236 + B3A SINE B2 9 174 -24 3 1376 642 58 0 0 chr1 103735203 103735290 -93460142 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1376 300 27 0 0 chr1 103736496 103736533 -93458899 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1376 344 331 21 42 chr1 103736569 103736711 -93458721 - B4A SINE B4 -5 287 149 3 1376 373 303 51 19 chr1 103736702 103736860 -93458572 + RMER15 LTR ERVL 392 554 -21 3 1376 468 0 0 0 chr1 103737366 103737418 -93458014 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1376 223 347 136 45 chr1 103738296 103738495 -93456937 - B4A SINE B4 -74 218 2 3 1376 7701 70 3 0 chr1 103738757 103739879 -93455553 - L1Md_F2 LINE L1 -12 6570 5442 3 1376 2656 244 55 48 chr1 103740023 103740820 -93454612 + RLTR40 LTR ERVK 8 810 -7 3 1376 353 362 78 37 chr1 103740918 103741136 -93454296 - RMER5 LTR ERV1 -237 297 71 3 1376 232 261 125 0 chr1 103741157 103741245 -93454187 - B3 SINE B2 0 216 118 3 1376 1746 294 31 17 chr1 103741614 103741760 -93453672 - Lx6 LINE L1 0 7460 7320 3 1376 333 0 0 0 chr1 103741760 103741797 -93453635 + (CAA)n Simple_repeat Simple_repeat 2 38 0 3 1376 1746 294 31 17 chr1 103741797 103742189 -93453243 - Lx6 LINE L1 -141 7319 6914 3 1376 2219 253 172 20 chr1 103742227 103743442 -93451990 - Lx6 LINE L1 -974 6486 5087 3 1376 272 83 0 20 chr1 103743451 103743500 -93451932 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1376 5799 115 64 31 chr1 103743505 103744490 -93450942 - Lx3_Mus LINE L1 -8 7001 5985 3 1376 4450 128 7 0 chr1 103744490 103745200 -93450232 + Lx3_Mus LINE L1 5216 5926 -1083 3 1376 211 136 0 22 chr1 103745202 103745247 -93450185 + A-rich Low_complexity Low_complexity 5 48 0 3 1376 746 96 0 0 chr1 103745253 103745368 -93450064 + Lx3_Mus LINE L1 5908 6022 -987 3 1376 1255 242 54 18 chr1 103746409 103746741 -93448691 - RMER4B LTR ERVK -137 448 105 3 1376 438 20 0 0 chr1 103746741 103746792 -93448640 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1376 246 57 0 0 chr1 103746792 103746827 -93448605 - RMER4B LTR ERVK -535 50 16 3 1376 1744 244 47 47 chr1 103747223 103747714 -93447718 + RLTR11A LTR ERVK 34 524 -4 3 1376 924 264 57 60 chr1 103748038 103748356 -93447076 - Lx4B LINE L1 -6 7052 6736 3 1376 4284 206 65 12 chr1 103748353 103749526 -93445906 - Lx4B LINE L1 0 7000 5784 3 1376 3990 122 3 2 chr1 103749517 103750107 -93445325 + Lx LINE L1 5661 6251 -403 3 1376 1043 101 0 0 chr1 103750145 103750284 -93445148 + B1_Mus1 SINE Alu 1 139 -9 3 1376 405 0 0 0 chr1 103750284 103750329 -93445103 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 3 1376 323 244 24 12 chr1 103750340 103750423 -93445009 + MYSERV16_I-int LTR ERVK 136 219 -2107 3 1376 4403 118 3 31 chr1 103750423 103751264 -93444168 - Lx6 LINE L1 -1024 4859 4107 3 1376 858 114 8 2 chr1 103751251 103751398 -93444034 + L1_Mm LINE L1 4902 5050 -836 3 1376 1059 229 50 72 chr1 103751406 103751768 -93443664 + MYSERV16_I-int LTR ERVK 581 934 -1392 3 1376 1092 162 182 9 chr1 103751784 103752123 -93443309 + MYSERV16_I-int LTR ERVK 1085 1482 -844 3 1376 447 364 52 0 chr1 103752260 103752433 -93442999 + B3 SINE B2 9 190 -26 3 1376 995 47 8 0 chr1 103752452 103752581 -93442851 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 1376 445 350 14 14 chr1 103752588 103752733 -93442699 + B4 SINE B4 1 145 -147 3 1376 462 18 0 0 chr1 103753806 103753861 -93441571 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1376 720 312 104 32 chr1 103754393 103754701 -93440731 - MTE2b LTR MaLR -13 366 37 3 1376 687 351 44 35 chr1 103754781 103755212 -93440220 + MT2A LTR ERVL 87 521 -12 3 1376 789 149 0 0 chr1 103755645 103755820 -93439612 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 1376 241 279 0 56 chr1 103755827 103755899 -93439533 + ID_B1 SINE B4 90 157 -67 3 1376 32669 62 48 2 chr1 103755901 103761552 -93433880 + L1Md_F3 LINE L1 621 6551 -33 3 1376 333 47 0 0 chr1 103761552 103761595 -93433837 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1376 287 282 0 0 chr1 103761595 103761666 -93433766 + ID_B1 SINE B4 143 213 -11 3 1376 252 0 0 0 chr1 103761666 103761694 -93433738 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1376 555 322 7 13 chr1 103762134 103762285 -93433147 + B3A SINE B2 2 151 -47 3 1376 234 0 0 0 chr1 103762548 103762574 -93432858 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1376 313 285 122 36 chr1 103762865 103763034 -93432398 + MTEa LTR MaLR 3 178 -201 4 1376 255 273 0 18 chr1 103763127 103763183 -93432249 + B3A SINE B2 6 60 -138 4 1376 740 172 118 0 chr1 103763819 103763988 -93431444 - B2_Mm2 SINE B2 -2 193 5 4 1376 226 200 63 51 chr1 103764113 103764192 -93431240 - MER103 DNA DNA -47 119 40 4 1376 369 123 0 0 chr1 103765539 103765604 -93429828 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1376 558 304 40 0 chr1 103765637 103765785 -93429647 - B3A SINE B2 -21 177 24 4 1376 28 29 0 0 chr1 103766164 103766199 -93429233 + AT_rich Low_complexity Low_complexity 1 35 0 4 1376 347 321 43 52 chr1 103766201 103766316 -93429116 + B4A SINE B4 1 114 -178 4 1376 21 0 0 0 chr1 103766332 103766353 -93429079 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 668 283 76 21 chr1 103766356 103766594 -93428838 - Lx6 LINE L1 -30 7430 7180 4 1376 379 285 96 14 chr1 103766604 103766750 -93428682 + B4 SINE B4 133 290 -2 4 1376 543 78 0 0 chr1 103766757 103766834 -93428598 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1376 539 312 5 69 chr1 103767211 103767414 -93428018 + B3A SINE B2 9 198 0 4 1376 7115 131 57 9 chr1 103767906 103767959 -93427473 + MusHAL1 LINE L1 775 827 -1885 4 1376 294 29 0 0 chr1 103767959 103767994 -93427438 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1376 7115 131 57 9 chr1 103767994 103769214 -93426218 + MusHAL1 LINE L1 828 2107 -605 4 1376 216 385 62 0 chr1 103769371 103769467 -93425965 - RSINE1 SINE B4 -57 108 7 4 1376 2261 85 9 25 chr1 103769665 103769990 -93425442 + L1_Mus2 LINE L1 6246 6565 -1 4 1376 251 336 0 27 chr1 103770186 103770296 -93425136 + GA-rich Low_complexity Low_complexity 3 109 0 4 1376 608 346 19 0 chr1 103771021 103771226 -93424206 - ID_B1 SINE B4 -7 217 9 4 1376 432 0 0 0 chr1 103771384 103771432 -93424000 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1376 1673 111 95 27 chr1 103771554 103771850 -93423582 - BGLII LTR ERVK -34 387 72 4 1376 184 0 30 61 chr1 103771864 103771897 -93423535 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1376 332 387 19 121 chr1 103771906 103772057 -93423375 - B4 SINE B4 -73 219 85 4 1376 1143 29 0 0 chr1 103772057 103772196 -93423236 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 4 1376 332 387 19 121 chr1 103772196 103772250 -93423182 - B4 SINE B4 -208 84 35 4 1376 274 326 0 44 chr1 103772639 103772729 -93422703 - ID_B1 SINE B4 -4 220 135 4 1376 343 350 26 0 chr1 103772724 103772841 -93422591 - ORR1E LTR MaLR -239 120 1 4 1376 567 363 44 4 chr1 103772968 103773195 -93422237 - B4 SINE B4 -54 238 3 4 1376 233 167 93 0 chr1 103773289 103773343 -93422089 + L1M3 LINE L1 4880 4938 -1202 4 1376 371 286 97 7 chr1 103773340 103773495 -93421937 + Lx6 LINE L1 6010 6178 -1282 4 1376 1843 262 40 33 chr1 103773495 103774072 -93421360 + Lx6 LINE L1 6282 6862 -598 4 1376 263 284 92 33 chr1 103774105 103774225 -93421207 + RMER15 LTR ERVL 299 425 -150 4 1376 285 314 11 28 chr1 103774669 103774849 -93420583 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1376 283 320 0 7 chr1 103774812 103774960 -93420472 + (CATA)n Simple_repeat Simple_repeat 4 150 0 4 1376 207 146 0 0 chr1 103775033 103775074 -93420358 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1376 195 69 0 0 chr1 103775486 103775515 -93419917 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1376 684 206 0 0 chr1 103775552 103775698 -93419734 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 1376 1409 120 17 4 chr1 103775748 103775983 -93419449 - L1_Mus3 LINE L1 -4 6634 6397 4 1376 4226 106 11 11 chr1 103775983 103776683 -93418749 + MusHAL1 LINE L1 193 892 -1820 4 1376 6209 91 6 8 chr1 103777316 103778891 -93416541 + L1_Mus1 LINE L1 5075 6638 0 4 1376 207 139 0 0 chr1 103778895 103778917 -93416515 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1376 1315 67 50 0 chr1 103778917 103779117 -93416315 + L1_Mus1 LINE L1 6376 6567 0 4 1376 21 36 0 0 chr1 103779834 103779862 -93415570 + AT_rich Low_complexity Low_complexity 1 28 0 4 1376 2440 117 11 0 chr1 103779865 103780215 -93415217 - L1_Mus2 LINE L1 0 6566 6213 4 1376 7637 47 2 8 chr1 103780474 103781480 -93413952 - L1Md_F2 LINE L1 0 6582 5584 4 1376 3540 20 0 0 chr1 103781480 103781876 -93413556 + MTA_Mm LTR MaLR 1 396 0 4 1376 5426 43 0 14 chr1 103781876 103782282 -93413150 - L1Md_F2 LINE L1 -300 5583 5182 4 1376 3772 40 0 0 chr1 103782278 103782776 -93412656 + L1_Mm LINE L1 3039 3536 -2347 4 1376 1756 160 12 15 chr1 103782776 103783100 -93412332 - RLTR31A_Mm LTR ERVK -261 323 1 4 1376 32 26 0 0 chr1 103783268 103783307 -93412125 + AT_rich Low_complexity Low_complexity 1 39 0 4 1376 24 32 0 0 chr1 103783758 103783789 -93411643 + AT_rich Low_complexity Low_complexity 1 31 0 4 1376 21576 80 1 3 chr1 103784096 103787927 -93407505 - L1Md_F2 LINE L1 -14 6568 2748 4 1376 1099 191 158 46 chr1 103788718 103789086 -93406346 + RLTR9E LTR ERVK 1 409 0 4 1376 192 111 0 0 chr1 103789501 103789537 -93405895 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 4 1376 7859 134 27 5 chr1 103789537 103791891 -93403541 - Lx3A LINE L1 -10 6971 4554 4 1376 270 81 0 0 chr1 103792076 103792113 -93403319 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1376 2283 95 6 0 chr1 103792434 103792751 -93402681 + L1_Mus1 LINE L1 6245 6563 -4 4 1376 240 239 165 0 chr1 103792803 103792917 -93402515 + Lx8 LINE L1 6666 6886 -758 4 1376 1495 309 50 15 chr1 103792963 103793808 -93401624 + L1_Mur3 LINE L1 4951 5824 -56 4 1376 466 258 13 19 chr1 103793828 103793967 -93401465 + Lx8 LINE L1 6566 6701 -995 4 1376 2964 85 0 0 chr1 103794061 103794450 -93400982 - L1_Mus1 LINE L1 -1 6566 6178 4 1376 2761 56 9 0 chr1 103794450 103794792 -93400640 - IAPLTR4 LTR ERVK 0 345 1 4 1376 7941 226 22 18 chr1 103794792 103798268 -93397164 - IAPLTR3-int LTR ERVK -351 7329 4107 4 1376 2053 246 32 17 chr1 103798269 103798856 -93396576 - IAPLTR3-int LTR ERVK -5786 1035 440 4 1376 435 242 24 16 chr1 103798908 103799034 -93396398 - IAPLTR3-int LTR ERVK -6358 463 337 4 1376 872 205 10 21 chr1 103799065 103799259 -93396173 - IAPLTR3-int LTR ERVK -6629 192 1 4 1376 2638 53 3 6 chr1 103799264 103799605 -93395827 - IAPLTR4 LTR ERVK -5 340 1 4 1376 290 164 0 18 chr1 103799605 103799661 -93395771 - L1_Mus1 LINE L1 -384 6183 6129 4 1376 537 353 48 0 chr1 103799820 103800092 -93395340 + B4A SINE B4 2 286 -6 4 1376 216 0 0 0 chr1 103800117 103800141 -93395291 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1376 252 62 0 0 chr1 103800459 103800491 -93394941 - L1Md_F2 LINE L1 -216 6366 6335 4 1376 229 313 99 20 chr1 103800943 103800976 -93394456 + B1F SINE Alu 12 120 -29 4 1376 325 250 44 0 chr1 103800976 103801044 -93394388 + ID_B1 SINE B4 128 198 -26 4 1376 405 300 0 52 chr1 103801819 103801935 -93393497 - B4A SINE B4 -10 282 173 4 1376 664 322 25 66 chr1 103803338 103803624 -93391808 + B4 SINE B4 9 282 -10 4 1376 438 75 0 0 chr1 103803651 103803718 -93391714 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1376 241 317 214 24 chr1 103804675 103804801 -93390631 + B3 SINE B2 2 151 -65 4 1376 1004 93 0 7 chr1 103804823 103804974 -93390458 + (TTCC)n Simple_repeat Simple_repeat 4 153 0 4 1376 890 132 11 17 chr1 103804975 103805058 -93390374 + polypyrimidine Low_complexity Low_complexity 97 178 0 4 1376 1232 74 11 0 chr1 103805058 103805234 -93390198 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 4 1376 890 132 11 17 chr1 103805234 103805327 -93390105 + polypyrimidine Low_complexity Low_complexity 4 96 0 4 1376 551 85 12 0 chr1 103805327 103805409 -93390023 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1376 3243 229 59 13 chr1 103805783 103806473 -93388959 - RMER13B LTR ERVK -186 722 1 4 1376 1642 234 78 67 chr1 103806475 103807099 -93388333 - RMER17A-int LTR ERVK -2 1726 1096 4 1376 535 176 9 0 chr1 103807165 103807273 -93388159 - RMER17A-int LTR ERVK -635 1093 985 4 1376 639 39 0 0 chr1 103808107 103808185 -93387247 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1376 610 254 31 11 chr1 103808318 103808485 -93386947 - RMER13B LTR ERVK 0 908 701 4 1376 294 73 0 0 chr1 103808605 103808646 -93386786 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1376 262 257 26 39 chr1 103808657 103808734 -93386698 + B4A SINE B4 10 85 -207 4 21 1535 241 55 6 chr1 103808840 103809183 -93386249 - ORR1B2 LTR MaLR -5 362 3 4 1377 21 0 0 0 chr1 103809309 103809330 -93386102 + AT_rich Low_complexity Low_complexity 1 21 0 4 1377 1673 239 37 0 chr1 103809794 103810149 -93385283 + ORR1D1 LTR MaLR 6 373 -1 4 1377 287 104 21 0 chr1 103810336 103810384 -93385048 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1377 241 375 48 82 chr1 103810407 103810698 -93384734 - B4 SINE B4 -9 283 3 4 1377 841 326 14 58 chr1 103811167 103811460 -93383972 + B4 SINE B4 5 284 -8 4 1377 406 265 106 42 chr1 103811676 103811818 -93383614 + B3 SINE B2 23 173 -43 4 1377 399 295 112 117 chr1 103811822 103812206 -93383226 + RLTR14 LTR ERV1 1 382 0 4 1377 261 27 27 0 chr1 103812254 103812291 -93383141 + B1_Mus2 SINE Alu 110 147 0 4 1377 584 281 0 40 chr1 103812480 103812632 -93382800 - B1_Mus1 SINE Alu -2 146 1 4 1377 240 250 32 149 chr1 103812550 103812644 -93382788 - MT2B2 LTR ERVL -346 238 156 4 1377 491 90 13 0 chr1 103812773 103812851 -93382581 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1377 7061 65 6 0 chr1 103813294 103814182 -93381250 - RLTR13B1 LTR ERVK 0 893 1 4 1377 5381 120 41 56 chr1 103815049 103815140 -93380292 - RLTR13D6 LTR ERVK -20 882 788 4 1377 948 41 0 0 chr1 103815140 103815261 -93380171 + (GA)n Simple_repeat Simple_repeat 1 121 0 4 1377 5381 103 24 61 chr1 103815261 103816095 -93379337 - RLTR13D6 LTR ERVK -115 787 2 4 1377 270 0 0 0 chr1 103817163 103817193 -93378239 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1377 921 192 2 12 chr1 103818005 103818227 -93377205 - BGLII LTR ERVK 0 441 226 4 1377 28490 116 9 5 chr1 103818229 103821825 -93373607 - L1_Mus1 LINE L1 -76 6491 2874 4 1377 3770 52 8 6 chr1 103821825 103822304 -93373128 - L1Md_F2 LINE L1 -3 6579 6100 4 1377 28490 117 11 6 chr1 103822304 103824018 -93371414 - L1_Mus1 LINE L1 -3010 2873 1157 4 1377 3003 44 0 0 chr1 103824023 103824388 -93371044 - L1Md_A LINE L1 0 6582 6218 4 1377 5616 19 0 1 chr1 103824388 103825073 -93370359 - L1Md_A LINE L1 -38 5845 5162 4 1377 39158 8 0 1 chr1 103825076 103831846 -93363586 - L1Md_A LINE L1 0 6582 1 5 1377 29886 39 1 8 chr1 103831844 103836619 -93358813 - L1Md_A LINE L1 -710 5173 441 4 1377 3186 193 54 10 chr1 103836622 103837349 -93358083 - L1Md_F LINE L1 -5471 1048 290 5 1377 270 225 24 24 chr1 103837355 103837437 -93357995 + L1MA6 LINE L1 6062 6143 -157 5 1377 1192 55 14 0 chr1 103838036 103838182 -93357250 + B1_Mus1 SINE Alu 1 148 0 5 1377 674 375 17 44 chr1 103838476 103838769 -93356663 - B4A SINE B4 -4 288 4 5 1377 198 229 0 0 chr1 103839414 103839484 -93355948 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1377 210 208 0 0 chr1 103839487 103839535 -93355897 + CT-rich Low_complexity Low_complexity 3 50 0 5 1377 464 311 17 8 chr1 103839614 103839734 -93355698 + RSINE1 SINE B4 26 146 -19 5 1377 516 72 0 0 chr1 103839742 103839811 -93355621 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1377 283 341 32 110 chr1 103839834 103839989 -93355443 - ORR1E LTR MaLR -120 239 97 5 1377 236 397 54 88 chr1 103840049 103840312 -93355120 - B4A SINE B4 -10 282 28 5 1377 529 238 40 26 chr1 103840465 103840616 -93354816 - Lx4B LINE L1 -20 7038 6886 5 1377 234 267 45 34 chr1 103840616 103840705 -93354727 - LTR48 LTR ERV1 -546 241 152 5 1377 4252 220 29 13 chr1 103840705 103841759 -93353673 - Lx4B LINE L1 -262 6796 5727 5 1377 12555 135 31 62 chr1 103841765 103845448 -93349984 - L1VL4 LINE L1 0 3559 1 5 1377 1215 260 38 45 chr1 103845456 103845879 -93349553 - L1_Mur2 LINE L1 -139 5738 5319 5 1377 562 286 0 0 chr1 103845887 103846069 -93349363 - L1VL4 LINE L1 -5578 724 543 5 1377 534 272 116 14 chr1 103847770 103848046 -93347386 + L1P5 LINE L1 5303 5606 -550 5 1377 1030 181 0 5 chr1 103848296 103848490 -93346942 - Lx2A1 LINE L1 -439 6569 6377 5 1377 810 0 0 0 chr1 103848492 103848582 -93346850 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 5 1377 315 0 0 0 chr1 103848598 103848633 -93346799 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1377 8227 58 1 2 chr1 103848639 103850410 -93345022 - L1Md_F3 LINE L1 -9 6575 4808 5 1377 2333 188 23 2 chr1 103850410 103850895 -93344537 - Lx2A1 LINE L1 -626 6382 5888 5 1377 1815 211 75 5 chr1 103850892 103851316 -93344116 + Lx2A1 LINE L1 6555 7008 0 5 1377 303 242 80 10 chr1 103851465 103851565 -93343867 + Lx8 LINE L1 7357 7463 -10 5 1377 2791 40 17 3 chr1 103852259 103852610 -93342822 - L1Md_F3 LINE L1 -17 6567 6212 5 1377 273 135 0 0 chr1 103853283 103853335 -93342097 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 5 1377 407 393 0 62 chr1 103853344 103853504 -93341928 + B4 SINE B4 54 203 -89 5 1377 570 109 0 0 chr1 103853512 103853604 -93341828 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1377 528 269 128 11 chr1 103853897 103854085 -93341347 + B3 SINE B2 1 210 -6 5 1377 214 269 0 37 chr1 103854258 103854339 -93341093 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 5 1377 684 228 133 0 chr1 103855011 103855191 -93340241 + B3 SINE B2 1 204 -12 5 1377 243 0 0 0 chr1 103855191 103855218 -93340214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1377 844 303 78 7 chr1 103855229 103855535 -93339897 - MTE2b LTR MaLR -30 349 22 5 1377 292 339 89 50 chr1 103855354 103855556 -93339876 - MT2A LTR ERVL -323 210 1 5 1377 608 265 20 80 chr1 103855783 103855984 -93339448 - B4A SINE B4 -1 291 103 5 1377 185 65 0 31 chr1 103857128 103857160 -93338272 + (CAA)n Simple_repeat Simple_repeat 3 33 0 5 1377 219 297 87 29 chr1 103857236 103857340 -93338092 - MIR SINE MIR -67 195 86 5 1377 388 297 22 52 chr1 103857426 103857556 -93337876 + MTE2b LTR MaLR 3 128 -251 5 1377 873 279 124 56 chr1 103857556 103857879 -93337553 + ORR1D1 LTR MaLR 1 345 -29 5 1377 561 14 0 0 chr1 103857879 103857949 -93337483 + L1Md_F2 LINE L1 5750 5819 -763 5 1377 2420 93 9 0 chr1 103857949 103858283 -93337149 + L1_Mus1 LINE L1 6231 6567 0 5 1377 500 133 51 60 chr1 103858283 103858327 -93337105 + L1_Mus4 LINE L1 5816 5859 -1837 5 1377 234 91 0 0 chr1 103858352 103858385 -93337047 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1377 231 36 0 0 chr1 103858420 103858448 -93336984 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1377 354 266 43 26 chr1 103858464 103858580 -93336852 + MTE2b LTR MaLR 262 379 0 5 1377 564 77 0 0 chr1 103858792 103858870 -93336562 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1377 453 183 57 24 chr1 103858889 103859012 -93336420 - Lx LINE L1 -1 6653 6527 5 1377 1400 82 5 14 chr1 103859062 103859272 -93336160 + L1Md_F2 LINE L1 6375 6582 0 5 1377 363 149 0 0 chr1 103859594 103859661 -93335771 + RMER4B LTR ERVK 1 67 -518 5 1377 5211 88 7 0 chr1 103859662 103860408 -93335024 - L1Md_F3 LINE L1 -73 5810 5060 5 1377 349 61 0 0 chr1 103860406 103860455 -93334977 + L1Md_F3 LINE L1 5851 5899 -685 5 1377 376 216 133 10 chr1 103860457 103860555 -93334877 + RMER4B LTR ERVK 326 435 -150 5 1377 223 24 70 47 chr1 103860843 103860886 -93334546 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 5 1377 182 105 0 26 chr1 103861258 103861297 -93334135 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1377 1221 111 33 0 chr1 103861835 103862015 -93333417 - B2_Mm1t SINE B2 -7 186 1 5 1377 480 18 0 0 chr1 103863295 103863352 -93332080 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1377 226 155 0 49 chr1 103863409 103863470 -93331962 + A-rich Low_complexity Low_complexity 3 60 0 5 1377 354 329 33 7 chr1 103863589 103863742 -93331690 - Lx8 LINE L1 -224 7249 7093 5 1377 215 280 37 74 chr1 103863771 103863852 -93331580 + PB1D10 SINE Alu 30 107 -10 5 1377 2209 183 6 55 chr1 103864079 103864418 -93331014 + L1_Mm LINE L1 4925 5251 -632 5 1377 731 70 53 0 chr1 103864418 103864532 -93330900 - L1_Mus2 LINE L1 -1 6565 6446 5 1377 2209 183 6 55 chr1 103864532 103864724 -93330708 + L1_Mm LINE L1 5252 5430 -453 5 1377 516 319 7 22 chr1 103864724 103864862 -93330570 + B3A SINE B2 47 182 -16 5 1377 22 56 0 0 chr1 103865617 103865653 -93329779 + AT_rich Low_complexity Low_complexity 1 36 0 5 1377 688 282 39 0 chr1 103866632 103866813 -93328619 - ORR1E LTR MaLR -162 197 10 5 1377 236 250 0 18 chr1 103867209 103867266 -93328166 + Zaphod DNA Tip100 72 127 -3904 5 1377 1255 47 0 0 chr1 103867375 103867523 -93327909 + B1_Mus1 SINE Alu 1 148 0 5 1377 563 302 84 5 chr1 103868005 103868208 -93327224 + ID_B1 SINE B4 5 223 -1 5 1377 213 180 60 0 chr1 103868208 103868258 -93327174 + GA-rich Low_complexity Low_complexity 1 53 0 5 1377 28 61 0 0 chr1 103868405 103868454 -93326978 + AT_rich Low_complexity Low_complexity 1 49 0 5 1377 256 178 61 209 chr1 103868977 103869140 -93326292 - RMER15 LTR ERVL -436 139 1 5 1377 211 324 44 126 chr1 103869936 103870095 -93325337 - B4A SINE B4 -120 172 27 5 1377 264 239 35 1 chr1 103870144 103870243 -93325189 + L1_Rod LINE L1 5726 5888 -412 5 1377 4318 120 26 12 chr1 103870803 103871492 -93323940 + Lx3_Mus LINE L1 6309 7007 -2 5 1377 824 55 0 9 chr1 103871749 103871860 -93323572 + (TCC)n Simple_repeat Simple_repeat 2 111 0 5 1377 511 305 79 51 chr1 103871972 103872621 -93322811 - L1MD1 LINE L1 -254 5988 5322 5 1377 183 26 0 93 chr1 103873474 103873517 -93321915 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 5 1377 1052 89 0 7 chr1 103873521 103873668 -93321764 - B1_Mus1 SINE Alu 0 148 3 5 1377 477 34 0 0 chr1 103873717 103873776 -93321656 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1377 470 328 71 54 chr1 103873780 103874060 -93321372 - B4 SINE B4 -6 286 2 5 1377 185 0 0 39 chr1 103874563 103874589 -93320843 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 1377 2965 18 3 0 chr1 103874745 103875081 -93320351 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1377 53588 18 12 9 chr1 103875081 103881537 -93313895 - IAPEz-int LTR ERVK 0 6481 8 5 1377 2944 21 3 0 chr1 103881537 103881873 -93313559 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1377 342 351 43 58 chr1 103881876 103882164 -93313268 - B4 SINE B4 -11 281 6 5 1377 297 0 0 0 chr1 103882344 103882377 -93313055 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1377 513 376 89 13 chr1 103883224 103883461 -93311971 + B4A SINE B4 11 265 -27 5 1377 465 19 0 0 chr1 103883490 103883544 -93311888 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1377 6981 164 34 21 chr1 103884106 103884727 -93310705 - Lx3B LINE L1 -4 6969 6335 5 1377 2923 76 2 10 chr1 103884727 103885124 -93310308 - MTA_Mm LTR MaLR 0 396 3 5 1377 7515 79 11 70 chr1 103885129 103886292 -93309140 - MTA_Mm-int LTR MaLR -3 1095 1 5 1377 3022 76 2 10 chr1 103886292 103886691 -93308741 - MTA_Mm LTR MaLR 0 396 1 5 1377 6981 158 50 10 chr1 103886691 103888093 -93307339 - Lx3B LINE L1 -639 6334 4892 5 1377 512 333 45 9 chr1 103888093 103888314 -93307118 - B4 SINE B4 -57 235 7 5 1377 402 143 0 0 chr1 103888717 103888794 -93306638 + (A)n Simple_repeat Simple_repeat 1 77 0 5 1377 536 347 54 54 chr1 103889728 103890097 -93305335 - MTD LTR MaLR -41 378 10 5 1377 4399 16 0 0 chr1 103891281 103891774 -93303658 - MT2_Mm LTR ERVL 0 493 1 5 1377 236 240 0 8 chr1 103893037 103893100 -93302332 + B2_Mm2 SINE B2 16 75 -141 5 1377 588 91 0 0 chr1 103893100 103893188 -93302244 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1377 618 284 6 19 chr1 103893190 103893371 -93302061 - B3 SINE B2 -36 180 5 5 1377 347 275 62 0 chr1 103893348 103893428 -93302004 - B4 SINE B4 -194 98 14 5 1377 298 357 153 0 chr1 103893552 103893709 -93301723 + MER45C DNA Tip100 1 181 -772 5 1377 342 0 0 0 chr1 103893742 103893780 -93301652 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1377 986 124 0 0 chr1 103893780 103893917 -93301515 - B1_Mus1 SINE Alu -10 138 2 5 1377 2671 61 0 3 chr1 103893930 103894275 -93301157 - L1Md_F2 LINE L1 -12 6570 6227 5 1377 267 423 54 0 chr1 103894439 103894550 -93300882 + MER45C DNA Tip100 432 548 -405 5 1377 417 86 0 0 chr1 103894744 103894802 -93300630 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1377 715 354 17 58 chr1 103895703 103895994 -93299438 - B4A SINE B4 -1 291 13 5 1377 351 44 22 0 chr1 103896505 103896550 -93298882 - L1_Mus3 LINE L1 -619 6019 5974 5 1377 1816 153 14 0 chr1 103896545 103896833 -93298599 + L1_Mus3 LINE L1 6124 6415 -223 5 1377 648 26 0 0 chr1 103896833 103896911 -93298521 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1377 468 0 0 0 chr1 103897572 103897624 -93297808 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1377 279 0 0 0 chr1 103897624 103897654 -93297778 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1377 36381 12 20 7 chr1 103898653 103903776 -93291656 + L1Md_A LINE L1 406 5586 -297 6 1377 8802 12 1 0 chr1 103903776 103904771 -93290661 + L1Md_A LINE L1 5587 6582 0 6 1377 602 94 8 57 chr1 103904931 103905055 -93290377 + GA-rich Low_complexity Low_complexity 3 120 0 6 1377 232 323 29 39 chr1 103905848 103905951 -93289481 - Lx7 LINE L1 -582 7114 7013 6 1377 599 354 19 5 chr1 103906170 103906377 -93289055 + ID_B1 SINE B4 7 216 -8 6 1377 36212 33 6 8 chr1 103906428 103911655 -93283777 + L1Md_A LINE L1 383 5586 -297 6 1377 8269 42 0 0 chr1 103911655 103912651 -93282781 + L1Md_T LINE L1 5587 6582 0 6 1377 36212 29 3 0 chr1 103912651 103912662 -93282770 + L1Md_A LINE L1 5587 5597 -286 6 1377 14127 28 0 0 chr1 103912662 103914339 -93281093 + L1Md_T LINE L1 3910 5586 -297 6 1377 8278 39 0 0 chr1 103914339 103915335 -93280097 + L1Md_T LINE L1 5587 6582 0 6 1377 300 319 167 33 chr1 103915978 103916253 -93279179 - RMER5 LTR ERV1 -3 531 220 6 1377 26 30 0 0 chr1 103917470 103917503 -93277929 + AT_rich Low_complexity Low_complexity 1 33 0 6 1377 387 0 0 0 chr1 103917506 103917549 -93277883 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1377 709 234 137 0 chr1 103917640 103917815 -93277617 - ORR1D1 LTR MaLR -6 368 170 6 1377 385 328 36 33 chr1 103917866 103918069 -93277363 - ORR1E LTR MaLR -61 309 98 6 1377 2948 122 49 0 chr1 103918348 103918854 -93276578 - L1_Mur1 LINE L1 -2481 3405 2875 6 1377 15497 108 21 21 chr1 103918856 103921326 -93274106 + L1_Mur1 LINE L1 3404 5874 -12 6 1377 3835 104 40 9 chr1 103921328 103921898 -93273534 + Lx3A LINE L1 6377 6964 -17 6 1377 455 0 18 0 chr1 103921898 103921953 -93273479 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 6 1377 243 0 0 0 chr1 103923519 103923546 -93271886 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1377 1354 80 43 0 chr1 103923599 103923786 -93271646 + B2_Mm2 SINE B2 1 195 0 6 1377 722 341 32 42 chr1 103924286 103924571 -93270861 + B4A SINE B4 7 288 -4 6 1377 220 262 16 0 chr1 103924577 103924638 -93270794 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1377 2478 132 12 12 chr1 103925192 103925592 -93269840 + MTB LTR MaLR 1 400 0 6 1377 480 48 0 0 chr1 103925675 103925738 -93269694 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1377 423 0 0 0 chr1 103925919 103925966 -93269466 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1377 686 308 110 29 chr1 103926402 103926678 -93268754 - MTEb LTR MaLR -9 365 85 6 1377 1011 95 0 0 chr1 103926678 103926836 -93268596 + (CA)n Simple_repeat Simple_repeat 2 159 0 6 1377 686 325 120 34 chr1 103926836 103926899 -93268533 - MTEb LTR MaLR -295 84 3 6 1377 4018 185 79 47 chr1 103927101 103927526 -93267906 + RMER17B LTR ERVK 7 428 -530 6 1377 900 133 0 0 chr1 103927526 103927706 -93267726 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1377 4018 185 79 47 chr1 103927706 103928202 -93267230 + RMER17B LTR ERVK 429 958 0 6 1377 181 391 0 14 chr1 103928937 103929007 -93266425 - MIRc SINE MIR -71 197 129 6 1377 26 30 0 0 chr1 103930677 103930710 -93264722 + AT_rich Low_complexity Low_complexity 1 33 0 6 1377 604 24 24 0 chr1 103931202 103931284 -93264148 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1377 624 120 0 0 chr1 103931306 103931398 -93264034 + BC1_Mm scRNA scRNA 2 93 -59 6 1377 207 0 0 0 chr1 103931592 103931615 -93263817 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1377 405 0 0 0 chr1 103931615 103931659 -93263773 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1377 7035 99 33 8 chr1 103931752 103932995 -93262437 + L1_Mus3 LINE L1 5357 6625 -13 6 1377 39 0 0 0 chr1 103932996 103933035 -93262397 + AT_rich Low_complexity Low_complexity 1 39 0 6 1377 3055 181 0 2 chr1 103933386 103933938 -93261494 + Lx2 LINE L1 6447 6997 0 6 1377 558 0 0 0 chr1 103934107 103934169 -93261263 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 6 1377 314 74 19 0 chr1 103934532 103934586 -93260846 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1377 477 371 50 15 chr1 103935100 103935300 -93260132 - B4A SINE B4 -81 211 5 6 1377 476 358 76 19 chr1 103935653 103935864 -93259568 - ID_B1 SINE B4 0 224 2 6 1377 24 0 0 0 chr1 103936760 103936784 -93258648 + AT_rich Low_complexity Low_complexity 1 24 0 6 1377 249 227 52 15 chr1 103937014 103937148 -93258284 + (TA)n Simple_repeat Simple_repeat 2 140 0 6 1377 285 98 0 0 chr1 103937940 103937981 -93257451 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1377 358 348 54 67 chr1 103938143 103938508 -93256924 + L1MCb LINE L1 55 658 -6093 6 1377 441 312 31 8 chr1 103938670 103938799 -93256633 + B3A SINE B2 66 197 -1 6 172 28602 111 11 8 chr1 103939778 103946148 -93249284 - L1Md_F2 LINE L1 -2 6580 177 6 1378 2669 100 10 5 chr1 103946252 103946644 -93248788 + L1_Mus2 LINE L1 6173 6566 0 6 1378 273 189 0 63 chr1 103947848 103947927 -93247505 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 6 1378 624 27 0 0 chr1 103947985 103948059 -93247373 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 1378 665 332 51 82 chr1 103948319 103948611 -93246821 + B4 SINE B4 3 285 -7 6 1378 227 233 17 0 chr1 103949124 103949184 -93246248 - MLT1A LTR MaLR -16 358 298 6 1378 219 36 0 0 chr1 103949185 103949213 -93246219 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1378 441 36 0 0 chr1 103949213 103949267 -93246165 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1378 470 345 103 60 chr1 103949292 103949526 -93245906 - B4 SINE B4 -1 291 48 6 1378 191 61 0 29 chr1 103950263 103950297 -93245135 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1378 24 53 0 0 chr1 103950406 103950444 -93244988 + AT_rich Low_complexity Low_complexity 1 38 0 6 1378 1360 255 136 52 chr1 103950668 103951184 -93244248 - RMER12 LTR ERVK -224 1098 769 6 1378 414 0 0 0 chr1 103951184 103951230 -93244202 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 6 1378 1360 237 161 25 chr1 103951230 103951405 -93244027 - RMER12 LTR ERVK -554 768 597 6 1378 778 377 31 25 chr1 103952044 103952520 -93242912 - RodERV21-int LTR ERV1 -540 4451 3973 6 1378 1079 354 59 58 chr1 103952559 103953671 -93241761 - RodERV21-int LTR ERV1 -1122 3869 2756 6 1378 588 29 0 0 chr1 103953898 103953968 -93241464 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 6 1378 209 33 33 0 chr1 103953972 103954002 -93241430 + (GGGAA)n Simple_repeat Simple_repeat 2 32 0 6 1378 1376 188 130 22 chr1 103954002 103954372 -93241060 - RMER17C LTR ERVK 0 410 1 6 1378 1431 269 112 27 chr1 103954377 103954924 -93240508 - RMER12 LTR ERVK -729 593 1 6 1378 740 302 11 0 chr1 103955053 103955232 -93240200 - B4A SINE B4 -20 272 92 6 1378 329 129 14 0 chr1 103955481 103955551 -93239881 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 6 1378 488 345 48 10 chr1 103955737 103955945 -93239487 - MER58A DNA MER1_type 0 224 9 6 1378 21 0 0 0 chr1 103956629 103956650 -93238782 + AT_rich Low_complexity Low_complexity 1 21 0 6 1378 21 36 0 0 chr1 103956894 103956922 -93238510 + AT_rich Low_complexity Low_complexity 1 28 0 6 1378 231 164 48 16 chr1 103957552 103957614 -93237818 + GA-rich Low_complexity Low_complexity 3 66 0 6 1378 23 0 0 0 chr1 103957940 103957963 -93237469 + AT_rich Low_complexity Low_complexity 1 23 0 6 1378 1072 114 0 0 chr1 103957966 103958124 -93237308 - L1_Mus2 LINE L1 -2 6564 6407 6 1378 640 335 92 14 chr1 103958232 103958580 -93236852 + MTE2a LTR MaLR 1 375 -4 6 1378 4908 140 14 88 chr1 103958673 103959647 -93235785 - RLTR13D6 LTR ERVK 0 902 1 6 1378 338 350 94 49 chr1 103961269 103961536 -93233896 - B4A SINE B4 -12 280 2 6 1378 1988 67 0 0 chr1 103961930 103962183 -93233249 + L1_Mus1 LINE L1 6315 6567 0 6 1378 3003 60 39 0 chr1 103962260 103962641 -93232791 - MTA_Mm LTR MaLR 0 396 1 6 1378 1422 131 0 5 chr1 103962867 103963090 -93232342 - Lx3_Mus LINE L1 -514 6495 6274 6 1378 2709 131 92 0 chr1 103963090 103963547 -93231885 + Lx3_Mus LINE L1 6499 6997 -12 6 1378 387 0 0 0 chr1 103963551 103963594 -93231838 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1378 434 325 58 24 chr1 103963909 103964117 -93231315 - B3 SINE B2 -1 215 1 6 1378 23 0 0 0 chr1 103964124 103964147 -93231285 + AT_rich Low_complexity Low_complexity 1 23 0 6 1378 248 328 57 49 chr1 103964687 103964809 -93230623 + B4A SINE B4 4 126 -166 6 1378 21 36 0 0 chr1 103965070 103965098 -93230334 + AT_rich Low_complexity Low_complexity 1 28 0 6 1378 25 0 0 0 chr1 103965321 103965346 -93230086 + AT_rich Low_complexity Low_complexity 1 25 0 6 1378 402 0 52 0 chr1 103965799 103965857 -93229575 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 6 1378 264 186 0 0 chr1 103966290 103966349 -93229083 + (CATA)n Simple_repeat Simple_repeat 4 62 0 6 1378 238 111 31 31 chr1 103966352 103966417 -93229015 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 6 1378 21 0 0 0 chr1 103966681 103966702 -93228730 + AT_rich Low_complexity Low_complexity 1 21 0 6 1378 218 316 0 0 chr1 103967265 103967322 -93228110 + (CATG)n Simple_repeat Simple_repeat 1 57 0 6 1378 180 0 0 0 chr1 103967485 103967505 -93227927 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1378 1074 96 0 0 chr1 103967514 103967660 -93227772 + B1_Mus1 SINE Alu 3 148 0 6 1378 411 98 0 0 chr1 103967660 103967721 -93227711 + (A)n Simple_repeat Simple_repeat 1 61 0 6 1378 642 148 23 8 chr1 103967757 103967886 -93227546 - L1_Mus3 LINE L1 -50 6588 6458 6 1378 984 316 50 21 chr1 103967886 103968225 -93227207 - MTE2b LTR MaLR -7 372 24 6 1378 3353 30 5 0 chr1 103968968 103969362 -93226070 + MTA_Mm LTR MaLR 1 396 0 6 1378 4846 39 0 0 chr1 103969362 103969974 -93225458 + MTA_Mm-int LTR MaLR 1 612 -486 6 1378 1149 254 99 34 chr1 103970069 103970423 -93225009 + MTD LTR MaLR 1 377 -42 6 1378 214 138 35 0 chr1 103971310 103971368 -93224064 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1378 28 29 0 0 chr1 103971418 103971453 -93223979 + AT_rich Low_complexity Low_complexity 1 35 0 6 1378 309 257 27 0 chr1 103971505 103971579 -93223853 + PB1 SINE Alu 47 122 -5 6 1378 4740 80 8 9 chr1 103971634 103972288 -93223144 + L1Md_F2 LINE L1 5920 6572 -10 6 1378 242 306 0 23 chr1 103972883 103972970 -93222462 + (TATG)n Simple_repeat Simple_repeat 2 86 0 6 1378 502 322 69 65 chr1 103972998 103973214 -93222218 - B4A SINE B4 -62 230 14 7 1378 227 196 19 67 chr1 103973414 103973518 -93221914 + T-rich Low_complexity Low_complexity 2 100 0 7 1378 291 85 0 0 chr1 103973707 103973754 -93221678 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1378 242 321 106 12 chr1 103973839 103973924 -93221508 - RSINE1 SINE B4 -62 103 11 7 1378 413 363 48 38 chr1 103974456 103974745 -93220687 + B4A SINE B4 1 292 0 7 1378 635 67 0 11 chr1 103975130 103975220 -93220212 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 7 1378 893 173 65 6 chr1 103975253 103975422 -93220010 - B2_Mm2 SINE B2 -16 179 1 7 1378 414 359 56 19 chr1 103975898 103976114 -93219318 + B4 SINE B4 4 227 -65 7 1378 33511 69 4 8 chr1 103976224 103981305 -93214127 + L1Md_F3 LINE L1 576 5585 -298 7 1378 7734 51 4 6 chr1 103981306 103982292 -93213140 + L1Md_F3 LINE L1 5587 6570 -14 7 1378 588 146 0 0 chr1 103982602 103982705 -93212727 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1378 37832 30 1 0 chr1 103982752 103989499 -93205933 - L1Md_T LINE L1 0 6585 1 7 1378 1646 26 0 0 chr1 103989825 103990015 -93205417 + B2_Mm1a SINE B2 2 191 -2 7 1378 3537 35 5 2 chr1 103990601 103991036 -93204396 - L1Md_F2 LINE L1 -2 6580 6145 7 1378 285 377 35 0 chr1 103991104 103991218 -93204214 + B4A SINE B4 2 119 -173 7 1378 315 321 95 11 chr1 103991325 103991514 -93203918 + B3 SINE B2 2 206 -10 7 1378 208 237 17 0 chr1 103992102 103992161 -93203271 + (TTTG)n Simple_repeat Simple_repeat 3 62 0 7 1378 992 336 67 3 chr1 103992162 103992490 -93202942 - MTEa LTR MaLR -12 367 19 7 1378 538 237 48 69 chr1 103993645 103993678 -93201754 + B3A SINE B2 8 31 -167 7 1378 1146 131 11 27 chr1 103993678 103993866 -93201566 + B2_Mm1t SINE B2 2 186 -7 7 1378 538 237 48 69 chr1 103993866 103993977 -93201455 + B3A SINE B2 32 149 -49 7 1378 654 13 0 0 chr1 103993995 103994070 -93201362 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1378 876 295 9 4 chr1 103994093 103994321 -93201111 - Lx6 LINE L1 -26 7434 7206 7 1378 4874 101 3 14 chr1 103994319 103995035 -93200397 - L1_Mm LINE L1 -392 5491 4784 7 1378 480 35 0 0 chr1 103995035 103995093 -93200339 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 7 1378 220 167 49 16 chr1 103995743 103995804 -93199628 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 7 1378 446 390 0 11 chr1 103995812 103995986 -93199446 - B4 SINE B4 -119 173 2 7 1378 376 166 42 85 chr1 103996561 103996662 -93198770 + ORR1A4 LTR MaLR 3 113 -281 7 1378 586 343 22 61 chr1 103997105 103997335 -93198097 + B4A SINE B4 5 225 -67 7 1378 672 211 0 40 chr1 103997949 103998097 -93197335 + B1_Mus2 SINE Alu 5 146 -1 7 1378 1124 246 74 9 chr1 103998151 103998476 -93196956 - MTEa LTR MaLR -16 363 18 7 1378 790 316 77 0 chr1 103998777 103999024 -93196408 - B4 SINE B4 -25 267 2 7 1378 366 23 0 0 chr1 103999565 103999608 -93195824 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1378 713 152 14 7 chr1 103999861 104000000 -93195432 - Lx LINE L1 -4 6650 6511 7 1378 934 71 0 0 chr1 104000000 104000126 -93195306 - Lx LINE L1 -144 6510 6385 1 1378 32 43 0 0 chr1 104000431 104000477 -93194955 + AT_rich Low_complexity Low_complexity 1 46 0 2 1378 219 226 0 61 chr1 104000718 104000784 -93194648 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 3 1378 227 405 45 0 chr1 104000837 104000948 -93194484 - B4A SINE B4 -94 198 83 4 1378 219 345 78 45 chr1 104000953 104000974 -93194458 - B2_Mm2 SINE B2 -10 185 3 5 1378 749 320 0 0 chr1 104000974 104001130 -93194302 - RSINE1 SINE B4 -2 163 8 6 1378 390 298 57 0 chr1 104002593 104002717 -93192715 - MTEa LTR MaLR -5 374 244 7 1378 984 128 0 0 chr1 104002860 104003016 -93192416 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 8 1378 265 291 224 0 chr1 104003193 104003327 -93192105 + MTE2a LTR MaLR 216 379 0 9 1378 270 0 0 0 chr1 104003504 104003534 -93191898 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1378 630 298 0 43 chr1 104004032 104004218 -93191214 + B3A SINE B2 5 182 -16 1 1378 237 151 0 0 chr1 104004234 104004287 -93191145 + GA-rich Low_complexity Low_complexity 2 54 0 1 1378 22 43 0 21 chr1 104004288 104004299 -93191133 + AT_rich Low_complexity Low_complexity 1 11 0 1 1378 243 0 0 0 chr1 104004299 104004326 -93191106 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1378 22 43 0 21 chr1 104004326 104004361 -93191071 + AT_rich Low_complexity Low_complexity 1 35 0 1 1378 506 168 9 0 chr1 104004767 104004880 -93190552 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1378 257 269 15 44 chr1 104004885 104005021 -93190411 + (TATG)n Simple_repeat Simple_repeat 3 134 0 1 1378 315 252 10 10 chr1 104004900 104005000 -93190432 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1378 773 299 71 34 chr1 104005045 104005312 -93190120 - B4A SINE B4 -15 277 1 1 1378 344 230 83 12 chr1 104005997 104006099 -93189333 - MTE2b LTR MaLR 0 379 271 2 1378 1753 152 18 65 chr1 104006101 104006438 -93188994 + ORR1A4 LTR MaLR 1 321 -8 2 1378 905 283 79 8 chr1 104006442 104006695 -93188737 - MTE2b LTR MaLR -106 273 3 2 1378 321 118 0 0 chr1 104007084 104007135 -93188297 + (T)n Simple_repeat Simple_repeat 1 51 0 2 1378 219 88 0 0 chr1 104007446 104007480 -93187952 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1378 483 18 0 0 chr1 104007486 104007542 -93187890 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1378 629 310 29 13 chr1 104007549 104007856 -93187576 - L1MA4A LINE L1 -392 5911 5600 2 1378 506 251 11 34 chr1 104007871 104008048 -93187384 + L1VL1 LINE L1 127 299 -6123 2 1378 601 249 270 33 chr1 104008039 104008367 -93187065 + L1Md_A LINE L1 103 629 -5987 2 1378 19613 56 0 10 chr1 104008413 104011356 -93184076 + L1Md_A LINE L1 928 3828 -2055 2 1378 490 198 0 0 chr1 104011356 104011462 -93183970 + Lx2 LINE L1 6890 6995 -2 2 1378 400 297 35 26 chr1 104011468 104011582 -93183850 - B4 SINE B4 -177 115 1 2 1378 244 290 62 39 chr1 104012090 104012219 -93183213 - MIRb SINE MIR -39 229 98 3 1378 3269 48 5 0 chr1 104012448 104012842 -93182590 - MTA_Mm LTR MaLR 0 396 1 3 1378 772 273 110 57 chr1 104012880 104013179 -93182253 - MTD LTR MaLR -39 380 66 3 1378 1144 232 58 25 chr1 104014075 104014391 -93181041 - RLTR12B LTR ERVK 0 528 208 3 1378 799 288 38 73 chr1 104014398 104014591 -93180841 - RLTR12A LTR ERVK -253 315 126 3 1378 1078 95 0 0 chr1 104014591 104014738 -93180694 - B1_Mus2 SINE Alu 0 147 1 3 1378 799 288 38 73 chr1 104014738 104014859 -93180573 - RLTR12A LTR ERVK -443 125 12 3 1378 716 270 53 23 chr1 104015051 104015316 -93180116 - RMER15 LTR ERVL -43 532 260 3 1378 246 160 0 0 chr1 104016116 104016166 -93179266 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 1378 261 296 62 0 chr1 104016396 104016477 -93178955 + MIRb SINE MIR 84 169 -99 3 1378 1910 170 130 3 chr1 104016484 104016838 -93178594 - BGLII_B LTR ERVK -42 399 1 3 1378 3566 43 7 2 chr1 104018029 104018471 -93176961 + L1Md_F3 LINE L1 6139 6582 -2 4 1378 36422 11 0 7 chr1 104019464 104024841 -93170591 + L1Md_A LINE L1 252 5586 -297 4 1378 8777 17 0 0 chr1 104024841 104025837 -93169595 + L1Md_A LINE L1 5587 6582 0 4 1378 583 313 68 41 chr1 104025880 104026100 -93169332 + B4 SINE B4 63 288 -4 4 1378 802 304 25 23 chr1 104026699 104026942 -93168490 + ORR1D2 LTR MaLR 1 244 -123 4 1378 445 267 169 11 chr1 104026953 104027142 -93168290 + ORR1D2 LTR MaLR 149 367 -3 4 1378 1998 164 14 0 chr1 104028237 104028596 -93166836 - Lx2B LINE L1 -265 6735 6372 4 1378 477 188 25 8 chr1 104028596 104028714 -93166718 + Lx2A1 LINE L1 6880 6999 -9 4 1378 372 22 0 0 chr1 104029432 104029477 -93165955 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1378 6280 191 28 5 chr1 104029885 104031565 -93163867 - Lx3C LINE L1 0 7000 5271 4 1378 3010 55 42 0 chr1 104031571 104031951 -93163481 + MTA_Mm LTR MaLR 1 396 0 4 1378 3528 65 4 4 chr1 104031951 104032429 -93163003 + MTA_Mm-int LTR MaLR 1 478 -620 4 1378 2135 45 8 0 chr1 104032427 104032692 -93162740 + MTA_Mm LTR MaLR 130 396 0 4 1378 2536 173 42 6 chr1 104032692 104033210 -93162222 - Lx3C LINE L1 -617 5269 4733 4 1378 9932 175 26 12 chr1 104033209 104035376 -93160056 + Lx3C LINE L1 2553 4749 -1137 4 1378 616 364 36 10 chr1 104036122 104036533 -93158899 + Lx8 LINE L1 7051 7472 -1 5 1378 1686 161 90 6 chr1 104036704 104037016 -93158416 + ORR1A1 LTR MaLR 1 338 -8 5 1378 21 36 0 0 chr1 104038210 104038238 -93157194 + AT_rich Low_complexity Low_complexity 1 28 0 5 1378 226 350 40 57 chr1 104038786 104038910 -93156522 - ORR1B2 LTR MaLR -238 129 8 5 1378 6007 79 7 5 chr1 104039252 104040113 -93155319 - L1_Mus2 LINE L1 0 6566 5704 5 1378 470 258 62 67 chr1 104040187 104040382 -93155050 + B3A SINE B2 5 198 0 5 1378 246 62 0 0 chr1 104040430 104040462 -93154970 + (TAA)n Simple_repeat Simple_repeat 1 32 0 5 1378 2929 131 7 18 chr1 104041834 104042285 -93153147 - RLTR41 LTR ERV1 0 446 1 5 1378 360 0 0 0 chr1 104042527 104042567 -93152865 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1378 399 21 0 0 chr1 104042567 104042614 -93152818 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1378 485 358 25 21 chr1 104042675 104042955 -93152477 - B4 SINE B4 -8 284 4 6 1378 303 28 0 0 chr1 104042997 104043033 -93152399 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1378 221 98 0 24 chr1 104043062 104043104 -93152328 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 6 1378 302 257 104 9 chr1 104043844 104043950 -93151482 - MLT1A1 LTR MaLR 0 408 293 6 1378 1862 148 53 24 chr1 104044282 104044513 -93150919 + Lx LINE L1 6295 6519 -135 6 1378 336 24 0 0 chr1 104044513 104044554 -93150878 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1378 1862 148 53 24 chr1 104044554 104044661 -93150771 + Lx LINE L1 6520 6642 -12 6 1378 1005 164 0 0 chr1 104044844 104045066 -93150366 + GA-rich Low_complexity Low_complexity 1 222 0 6 1378 1684 141 11 0 chr1 104045910 104046179 -93149253 + RMER6B LTR ERVK 1 272 -189 6 1378 2354 109 55 95 chr1 104046180 104046675 -93148757 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1378 418 147 17 136 chr1 104046676 104046794 -93148638 + IAPEz-int LTR ERVK 9 112 -6369 6 1378 227 339 0 0 chr1 104046794 104046850 -93148582 + RLTR27 LTR ERVK 220 275 -34 6 1378 3232 63 18 12 chr1 104046850 104047566 -93147866 + IAPEz-int LTR ERVK 168 662 -5819 6 1378 2039 69 4 0 chr1 104047566 104047843 -93147589 + IAPEz-int LTR ERVK 1359 1636 -4845 6 1378 5763 39 4 19 chr1 104047842 104048599 -93146833 + IAPEz-int LTR ERVK 5736 6481 0 6 1378 2477 102 101 31 chr1 104048599 104049043 -93146389 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1378 1020 179 10 26 chr1 104049043 104049238 -93146194 + RMER6B LTR ERVK 268 459 -2 7 1378 208 227 0 0 chr1 104049309 104049353 -93146079 + (TTG)n Simple_repeat Simple_repeat 1 44 0 7 1378 228 254 15 45 chr1 104049601 104049667 -93145765 - B4 SINE B4 -153 139 76 7 1378 30 27 0 0 chr1 104049874 104049911 -93145521 + AT_rich Low_complexity Low_complexity 1 37 0 7 1378 491 375 36 22 chr1 104050210 104050488 -93144944 + B4 SINE B4 2 283 -9 7 1378 590 283 57 102 chr1 104050465 104050902 -93144530 - MTD LTR MaLR -15 404 1 7 1378 333 0 0 0 chr1 104050954 104050991 -93144441 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1378 305 302 50 8 chr1 104051384 104051504 -93143928 + MER2 DNA MER2_type 64 188 -157 7 1378 396 0 0 0 chr1 104051694 104051738 -93143694 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1378 235 366 50 44 chr1 104051739 104051919 -93143513 - MIR SINE MIR -71 191 11 7 1378 2520 212 19 21 chr1 104052265 104052866 -93142566 + RLTR26 LTR ERVK 1 641 -1 8 1378 405 0 0 0 chr1 104053134 104053179 -93142253 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1378 207 0 0 0 chr1 104053179 104053201 -93142231 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1378 657 316 33 66 chr1 104053511 104053747 -93141685 + B4A SINE B4 2 229 -63 8 1378 297 341 180 6 chr1 104053747 104053930 -93141502 + B3 SINE B2 1 215 -1 8 1378 1651 332 37 76 chr1 104054465 104055501 -93139931 - Lx8 LINE L1 -281 7192 6198 8 1378 828 0 0 0 chr1 104055502 104055594 -93139838 + (TTC)n Simple_repeat Simple_repeat 3 94 0 8 1378 261 0 0 0 chr1 104055594 104055623 -93139809 + (TC)n Simple_repeat Simple_repeat 1 29 0 8 1378 243 0 0 0 chr1 104055623 104055650 -93139782 + (TA)n Simple_repeat Simple_repeat 2 28 0 8 1378 405 254 164 14 chr1 104055823 104055963 -93139469 - RSINE1 SINE B4 -1 164 4 8 1378 215 224 44 15 chr1 104057703 104057771 -93137661 + GA-rich Low_complexity Low_complexity 4 73 0 9 1378 3144 24 53 0 chr1 104058064 104058440 -93136992 - MTA_Mm LTR MaLR 0 396 1 9 1378 3217 29 0 0 chr1 104058576 104059028 -93136404 - L1Md_A LINE L1 -599 5983 5532 9 1378 3406 39 5 0 chr1 104059028 104059437 -93135995 + L1Md_T LINE L1 6171 6581 -1 9 1378 1324 285 25 14 chr1 104059719 104060082 -93135350 - MTE2a LTR MaLR -2 377 11 9 1378 356 222 22 22 chr1 104060478 104060570 -93134862 + B4A SINE B4 1 92 -200 9 1378 1557 169 13 3 chr1 104060845 104061160 -93134272 - L1_Mm LINE L1 -1751 4132 3815 9 1378 486 273 78 8 chr1 104061314 104061443 -93133989 - RSINE1 SINE B4 -17 148 11 9 1378 286 360 9 46 chr1 104063015 104063233 -93132199 - CR1_Mam LINE CR1 -1217 987 778 9 1378 257 274 12 23 chr1 104063506 104063591 -93131841 - B4A SINE B4 -118 174 91 9 1378 2459 197 78 48 chr1 104063591 104064156 -93131276 - RLTR31A_Mm LTR ERVK -2 582 1 1 1378 262 330 29 39 chr1 104064306 104064410 -93131022 - PB1D9 SINE Alu -15 105 3 1 1378 203 195 24 0 chr1 104064595 104064636 -93130796 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 1 1378 1200 338 73 39 chr1 104064691 104065460 -93129972 + Lx9 LINE L1 6397 7191 -453 1 1378 206 205 0 0 chr1 104065634 104065673 -93129759 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1378 417 86 0 0 chr1 104066657 104066715 -93128717 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1378 618 300 65 29 chr1 104066729 104067004 -93128428 - B4 SINE B4 -7 285 1 1 1378 431 351 29 6 chr1 104067189 104067364 -93128068 - MER5A DNA MER1_type -9 180 2 1 1378 342 309 61 10 chr1 104068373 104068471 -93126961 + B3A SINE B2 58 160 -38 1 1378 423 0 0 0 chr1 104068474 104068521 -93126911 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1378 3301 46 2 0 chr1 104068905 104069300 -93126132 - MTA_Mm LTR MaLR 0 396 1 1 1378 544 332 98 14 chr1 104069603 104069817 -93125615 + B4A SINE B4 53 284 -8 1 1378 318 50 0 0 chr1 104070633 104070673 -93124759 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1379 611 234 218 16 chr1 104071185 104071495 -93123937 - MTE2a LTR MaLR 0 379 8 1 1379 607 236 24 12 chr1 104071511 104071678 -93123754 + B2_Mm2 SINE B2 27 195 0 1 1379 318 301 7 89 chr1 104071847 104071982 -93123450 - B4 SINE B4 -6 286 163 1 1379 378 233 51 65 chr1 104071965 104072070 -93123362 - RLTR20D LTR ERVK -4 547 444 1 1379 612 0 0 0 chr1 104072070 104072138 -93123294 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1379 378 233 51 65 chr1 104072138 104072170 -93123262 - RLTR20D LTR ERVK -108 443 412 1 1379 635 311 34 34 chr1 104072179 104072415 -93123017 - RLTR20D LTR ERVK -285 283 48 1 1379 226 323 15 15 chr1 104072536 104072602 -93122830 - ID4_ SINE ID -15 68 3 1 1379 236 343 30 0 chr1 104073515 104073582 -93121850 + MIRb SINE MIR 36 104 -164 1 1379 552 323 76 30 chr1 104073819 104074017 -93121415 + B4 SINE B4 82 288 -4 1 1379 5378 178 36 35 chr1 104074426 104075519 -93119913 + RLTR25A LTR ERVK 8 1101 -2 1 1379 461 298 102 30 chr1 104075785 104075951 -93119481 - ID_B1 SINE B4 -31 193 16 1 1379 703 356 39 14 chr1 104076621 104076906 -93118526 + B4A SINE B4 1 292 0 1 1379 402 74 0 0 chr1 104077311 104077365 -93118067 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1379 669 277 41 94 chr1 104077941 104078208 -93117224 - MTE2b LTR MaLR -124 255 3 1 1379 659 365 72 8 chr1 104078281 104078546 -93116886 + B4A SINE B4 11 292 0 1 1379 3363 48 2 0 chr1 104078613 104079026 -93116406 - L1Md_F2 LINE L1 -14 6568 6155 1 1379 4520 152 122 3 chr1 104079158 104080014 -93115418 - RMER17B LTR ERVK -1 957 1 1 1379 457 325 35 40 chr1 104080125 104080324 -93115108 + B4 SINE B4 6 203 -89 1 1379 2259 245 51 20 chr1 104080567 104081120 -93114312 - MTC-int LTR MaLR -688 570 1 1 1379 934 253 74 19 chr1 104081209 104081467 -93113965 - MTC LTR MaLR -43 378 107 1 1379 36 53 0 0 chr1 104081705 104081762 -93113670 + AT_rich Low_complexity Low_complexity 1 57 0 1 1379 378 288 25 25 chr1 104082047 104082204 -93113228 - Lx8 LINE L1 -315 7158 7002 1 1379 410 294 46 31 chr1 104082447 104082577 -93112855 - MT2A LTR ERVL -75 458 327 1 1379 642 348 74 43 chr1 104083305 104083767 -93111665 - MT2A LTR ERVL 0 533 58 1 1379 367 358 107 63 chr1 104084683 104084954 -93110478 + B4A SINE B4 4 286 -6 1 1379 200 182 0 0 chr1 104084961 104084994 -93110438 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1379 233 270 16 0 chr1 104085195 104085258 -93110174 - RMER15 LTR ERVL -109 466 403 1 1379 269 361 37 60 chr1 104085258 104085526 -93109906 - Lx8 LINE L1 -207 7266 7005 1 1379 370 325 169 5 chr1 104085867 104086062 -93109370 - B4 SINE B4 -64 228 2 1 1379 590 310 103 11 chr1 104086216 104086575 -93108857 + L1MA6 LINE L1 5846 6237 -63 1 1379 713 309 41 25 chr1 104086667 104086863 -93108569 + B4A SINE B4 76 274 -18 1 1379 265 340 40 27 chr1 104086876 104087024 -93108408 - MER115 DNA Tip100 -31 662 513 1 1379 353 296 143 36 chr1 104087221 104087417 -93108015 - RMER15 LTR ERVL -16 559 343 1 1379 2441 195 6 12 chr1 104087964 104088463 -93106969 + L1VL4 LINE L1 37 532 -5770 1 1379 8664 189 9 12 chr1 104088460 104089040 -93106392 + Lx LINE L1 4046 4628 -1249 1 1379 585 0 0 0 chr1 104089040 104089105 -93106327 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1379 8664 184 7 11 chr1 104089105 104091047 -93104385 + Lx LINE L1 4629 6565 -89 1 1379 3510 20 2 0 chr1 104091047 104091442 -93103990 - MTA_Mm LTR MaLR 0 396 1 1 1379 9046 37 4 4 chr1 104091442 104092540 -93102892 - MTA_Mm-int LTR MaLR 0 1098 1 1 1379 3473 23 2 0 chr1 104092540 104092935 -93102497 - MTA_Mm LTR MaLR 0 396 1 1 1379 5545 178 6 10 chr1 104092935 104093024 -93102408 + Lx LINE L1 6566 6652 -2 1 1379 1102 202 21 0 chr1 104093633 104093871 -93101561 - Lx2 LINE L1 -3 6994 6752 1 1379 648 0 0 0 chr1 104093871 104093943 -93101489 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1379 470 372 43 25 chr1 104094000 104094281 -93101151 - B4A SINE B4 -4 288 3 1 1379 499 259 179 12 chr1 104094549 104094845 -93100587 - MTEa LTR MaLR 0 370 1 1 1379 990 304 69 20 chr1 104095667 104096013 -93099419 - MTD LTR MaLR -15 404 42 1 1379 306 0 0 0 chr1 104096291 104096325 -93099107 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1379 225 278 0 53 chr1 104096350 104096426 -93099006 - MLT2B4 LTR ERVL -296 260 189 1 1379 254 294 37 116 chr1 104096498 104096687 -93098745 - RMER12 LTR ERVK -476 846 673 1 1379 210 301 11 0 chr1 104096984 104097077 -93098355 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1379 211 254 0 0 chr1 104097011 104097074 -93098358 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 1 1379 447 19 0 0 chr1 104097173 104097225 -93098207 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1379 184 278 47 93 chr1 104097338 104097445 -93097987 + MIR SINE MIR 90 191 -71 1 1379 558 315 6 12 chr1 104097452 104097616 -93097816 + MTEa LTR MaLR 1 163 -216 1 1379 285 275 0 0 chr1 104098256 104098325 -93097107 + Lx5 LINE L1 6605 6673 -377 1 1379 452 62 16 0 chr1 104098336 104098400 -93097032 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1379 333 0 0 0 chr1 104098551 104098588 -93096844 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1379 705 168 7 44 chr1 104098588 104098725 -93096707 + Lx5 LINE L1 6743 6874 -176 1 1379 439 357 48 83 chr1 104098840 104099130 -93096302 - B4 SINE B4 -12 280 1 1 1379 498 61 0 0 chr1 104099196 104099262 -93096170 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1379 217 309 59 0 chr1 104099591 104099659 -93095773 + ID SINE ID 2 73 -151 1 1379 26 30 0 0 chr1 104099922 104099955 -93095477 + AT_rich Low_complexity Low_complexity 1 33 0 1 1379 359 307 59 51 chr1 104099986 104100223 -93095209 - Lx5 LINE L1 0 7050 6812 1 1379 707 313 56 60 chr1 104101713 104101998 -93093434 + B4 SINE B4 9 292 0 1 1379 1602 152 45 72 chr1 104102448 104102782 -93092650 + ORR1A4 LTR MaLR 1 325 -4 1 1379 229 237 16 33 chr1 104102948 104103009 -93092423 - B4 SINE B4 -68 224 165 1 1379 586 343 17 34 chr1 104103799 104103977 -93091455 + B3A SINE B2 8 182 -16 1 1379 330 87 0 0 chr1 104103991 104104037 -93091395 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1379 355 357 0 26 chr1 104104069 104104184 -93091248 + B4 SINE B4 177 288 -4 1 1379 280 355 38 22 chr1 104104318 104104502 -93090930 - MIRb SINE MIR -79 189 3 1 1379 660 238 44 3 chr1 104106020 104106339 -93089093 - Lx9 LINE L1 -2 7642 7288 1 1379 26 0 0 0 chr1 104106340 104106366 -93089066 + AT_rich Low_complexity Low_complexity 1 26 0 1 1379 617 322 48 5 chr1 104106369 104106578 -93088854 + ID_B1 SINE B4 5 222 -2 1 1379 429 268 26 9 chr1 104106615 104106728 -93088704 + B4A SINE B4 117 231 -61 1 1379 663 193 15 15 chr1 104106730 104106867 -93088565 - ORR1B2 LTR MaLR 0 367 231 1 1379 1421 184 101 21 chr1 104106867 104107071 -93088361 - RMER17C LTR ERVK -2 408 200 1 1379 522 0 0 0 chr1 104107071 104107129 -93088303 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1379 1421 184 101 21 chr1 104107129 104107302 -93088130 - RMER17C LTR ERVK -211 199 2 1 1379 2110 200 135 32 chr1 104107302 104107599 -93087833 - RMER17C-int LTR ERVK 0 3238 2945 1 1379 441 0 0 0 chr1 104107599 104107648 -93087784 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1379 2110 200 135 32 chr1 104107648 104107913 -93087519 - RMER17C-int LTR ERVK -294 2944 2619 1 1379 1128 223 13 0 chr1 104107920 104108144 -93087288 - ORR1B2 LTR MaLR -140 227 1 1 1379 408 40 0 0 chr1 104108259 104108309 -93087123 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1379 1935 240 17 2 chr1 104108803 104109217 -93086215 + MTC LTR MaLR 1 420 -1 1 1379 1045 268 83 137 chr1 104109278 104109473 -93085959 - RMER20B LTR ERVK -94 533 309 1 1379 1022 58 0 7 chr1 104109473 104109612 -93085820 + (TTC)n Simple_repeat Simple_repeat 3 140 0 1 1379 1045 268 83 137 chr1 104109612 104109979 -93085453 - RMER20B LTR ERVK -319 308 1 1 1379 421 389 15 15 chr1 104110246 104110442 -93084990 + B4 SINE B4 3 198 -94 1 1379 519 90 0 0 chr1 104110549 104110627 -93084805 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1379 298 211 40 100 chr1 104110673 104110684 -93084748 - 4.5SRNA scRNA scRNA 0 94 2 1 1379 623 102 0 0 chr1 104110684 104110772 -93084660 - B1_Mus1 SINE Alu -57 91 4 1 1379 415 108 0 0 chr1 104110775 104110840 -93084592 - Lx2 LINE L1 -1158 5839 5775 1 1379 860 276 25 0 chr1 104111656 104111859 -93083573 - ID_B1 SINE B4 -4 220 13 1 1379 180 0 0 0 chr1 104111865 104111885 -93083547 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1379 31 68 0 0 chr1 104112001 104112060 -93083372 + AT_rich Low_complexity Low_complexity 1 59 0 1 1379 2829 53 0 0 chr1 104112193 104112573 -93082859 + L1Md_F2 LINE L1 6209 6582 0 1 1379 529 140 35 0 chr1 104112574 104112688 -93082744 + L1Md_F2 LINE L1 6465 6582 0 1 1379 297 0 0 0 chr1 104113187 104113220 -93082212 + (TTC)n Simple_repeat Simple_repeat 3 35 0 1 1379 993 152 0 0 chr1 104113220 104113264 -93082168 + polypyrimidine Low_complexity Low_complexity 137 180 0 1 1379 1620 0 0 0 chr1 104113264 104113444 -93081988 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1379 993 152 0 0 chr1 104113444 104113577 -93081855 + polypyrimidine Low_complexity Low_complexity 4 136 0 2 1379 703 239 26 23 chr1 104113628 104113808 -93081624 - B3 SINE B2 -10 185 4 2 1379 774 31 0 0 chr1 104114346 104114443 -93080989 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1379 6512 36 0 6 chr1 104114954 104115736 -93079696 - L1Md_F2 LINE L1 -9 6573 5797 2 1379 6796 107 12 26 chr1 104115959 104116997 -93078435 - RLTR13D5 LTR ERVK 0 1023 1 2 1379 1471 291 21 24 chr1 104117230 104117494 -93077938 - MTE2a LTR MaLR 0 379 115 2 1379 1554 213 86 6 chr1 104117494 104117844 -93077588 - ORR1C1 LTR MaLR 0 378 1 2 1379 1471 291 21 24 chr1 104117844 104117959 -93077473 - MTE2a LTR MaLR -265 114 1 2 1379 246 95 0 0 chr1 104118383 104118425 -93077007 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 2 1379 489 173 28 17 chr1 104118428 104118604 -93076828 + CT-rich Low_complexity Low_complexity 3 180 0 2 1379 2059 231 26 112 chr1 104118608 104118893 -93076539 - MusHAL1 LINE L1 -1586 1126 850 2 1379 324 48 0 0 chr1 104118893 104118935 -93076497 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1379 2059 231 26 112 chr1 104118935 104119143 -93076289 - MusHAL1 LINE L1 -1863 849 688 2 1379 956 99 7 53 chr1 104119143 104119293 -93076139 - B1_Mm SINE Alu -1 146 4 2 1379 2059 231 26 112 chr1 104119293 104119704 -93075728 - MusHAL1 LINE L1 -2025 687 298 2 1379 714 147 0 0 chr1 104119705 104119834 -93075598 + (TCC)n Simple_repeat Simple_repeat 2 130 0 2 1379 916 228 96 39 chr1 104119840 104120299 -93075133 - L1_Mur2 LINE L1 -4403 1474 987 2 1379 2162 135 6 0 chr1 104120694 104121019 -93074413 + ORR1A2 LTR MaLR 1 327 0 2 1379 386 355 91 48 chr1 104121259 104121438 -93073994 + B4A SINE B4 74 263 -29 2 1379 315 0 0 0 chr1 104121438 104121473 -93073959 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1379 386 355 91 48 chr1 104121473 104121503 -93073929 + B4A SINE B4 264 292 0 2 1379 1714 283 42 29 chr1 104122195 104122748 -93072684 - RLTR20B1 LTR ERVK -2 561 2 2 1379 207 0 0 0 chr1 104123326 104123349 -93072083 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1379 778 302 62 8 chr1 104123453 104123649 -93071783 - MTEb LTR MaLR 0 379 170 2 1379 262 0 26 26 chr1 104123649 104123688 -93071744 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1379 778 302 62 8 chr1 104123688 104123748 -93071684 - MTEb LTR MaLR -210 169 110 2 1379 503 350 130 11 chr1 104124300 104124647 -93070785 - MTD LTR MaLR -12 388 1 2 1379 952 345 44 19 chr1 104125282 104125648 -93069784 - MTE2a LTR MaLR 0 379 5 2 1379 1782 150 24 27 chr1 104125836 104126166 -93069266 - ORR1A4 LTR MaLR 0 329 1 2 1379 538 148 33 8 chr1 104126790 104127036 -93068396 + (CAGAGA)n Simple_repeat Simple_repeat 1 252 0 2 1379 24 32 0 0 chr1 104127281 104127312 -93068120 + AT_rich Low_complexity Low_complexity 1 31 0 2 1379 408 343 52 7 chr1 104127320 104127455 -93067977 + RSINE1 SINE B4 12 152 -13 2 1379 1181 106 0 6 chr1 104128188 104128288 -93067144 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 1379 1184 62 11 0 chr1 104128288 104128466 -93066966 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 2 1379 1181 106 0 6 chr1 104128466 104128546 -93066886 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1379 7540 56 2 0 chr1 104128665 104130249 -93065183 - L1Md_F2 LINE L1 -3 6579 4993 2 1379 291 372 78 0 chr1 104130249 104130378 -93065054 - B4A SINE B4 -83 209 71 2 1379 6740 106 9 2 chr1 104130474 104130733 -93064699 - L1_Mus3 LINE L1 -4 6634 6374 2 1379 399 21 0 0 chr1 104130733 104130781 -93064651 + (ATTG)n Simple_repeat Simple_repeat 1 48 0 2 1379 6740 109 8 2 chr1 104130781 104131600 -93063832 - L1_Mus3 LINE L1 -265 6373 5549 2 1379 3169 163 18 3 chr1 104131600 104132216 -93063216 + L1_Mus3 LINE L1 4908 5532 -351 2 1379 504 256 170 6 chr1 104132216 104132423 -93063009 - RMER20B LTR ERVK -111 405 174 2 1379 478 283 117 48 chr1 104132578 104132723 -93062709 - RMER20B LTR ERVK -361 155 1 2 1379 355 260 107 29 chr1 104132723 104132823 -93062609 - B4 SINE B4 -184 108 1 2 1379 218 384 0 0 chr1 104133328 104133401 -93062031 + B4A SINE B4 8 80 -212 2 1379 23348 27 25 21 chr1 104133572 104135943 -93059489 + L1_Mm LINE L1 2486 4916 -967 2 1379 228 183 46 77 chr1 104135943 104136008 -93059424 - RMER20A LTR ERVK -268 248 186 2 1379 23348 27 25 21 chr1 104136008 104136660 -93058772 + L1_Mm LINE L1 4917 5586 -297 2 1379 8208 47 6 0 chr1 104136660 104137650 -93057782 + L1Md_T LINE L1 5587 6582 0 2 1379 7874 188 23 4 chr1 104137955 104140453 -93054979 - Lx LINE L1 0 6654 4113 2 1379 37861 24 1 5 chr1 104140454 104146110 -93049322 - L1Md_A LINE L1 0 6582 964 2 1379 38924 28 5 12 chr1 104146134 104153177 -93042255 - L1Md_A LINE L1 0 6582 1 2 1379 13384 132 18 24 chr1 104153180 104156653 -93038779 - Lx LINE L1 -1762 4124 667 2 1379 423 305 58 39 chr1 104157084 104157289 -93038143 + RMER15 LTR ERVL 352 560 -15 2 1379 4240 225 4 19 chr1 104158154 104158611 -93036821 + L1_Mur1 LINE L1 4775 5232 -654 2 1379 2195 126 27 73 chr1 104158611 104159023 -93036409 + RLTR9C LTR ERVK 1 393 0 2 1379 4240 225 4 19 chr1 104159023 104159642 -93035790 + L1_Mur1 LINE L1 5233 5835 -51 2 1379 2455 116 50 23 chr1 104159642 104160040 -93035392 - RLTR9E LTR ERVK 0 409 1 2 1379 506 66 0 50 chr1 104160040 104160120 -93035312 - ETnERV2-int LTR ERVK 0 7406 7331 2 1379 2353 179 97 4 chr1 104160120 104160613 -93034819 - RLTR13D6 LTR ERVK -363 539 1 2 1379 1409 154 8 4 chr1 104160627 104160874 -93034558 - ETnERV3-int LTR ERVK -30 5778 5531 2 1379 335 88 0 66 chr1 104160889 104160950 -93034482 - RLTR45-int LTR ERVK -1172 6072 6016 2 1379 1451 207 23 43 chr1 104161053 104161963 -93033469 - ETnERV2-int LTR ERVK -1230 4176 2695 2 1379 2808 105 22 9 chr1 104161966 104162417 -93033015 - ETnERV2-int LTR ERVK -3509 3897 3441 2 1379 4276 125 44 17 chr1 104162705 104163580 -93031852 - ETnERV2-int LTR ERVK -4044 3362 2012 2 1379 5753 173 10 11 chr1 104163580 104164637 -93030795 + Lx2 LINE L1 5942 6997 0 2 1379 244 263 0 0 chr1 104165442 104165499 -93029933 + MTE2b LTR MaLR 7 63 -316 2 1379 333 307 80 0 chr1 104165702 104165839 -93029593 + MER2 DNA MER2_type 32 179 -166 2 1379 405 311 189 15 chr1 104165839 104165875 -93029557 + HAL1-3A_ME LINE L1 1976 2011 -847 2 1379 228 35 0 0 chr1 104165875 104165904 -93029528 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 2 1379 405 311 189 15 chr1 104165904 104166063 -93029369 + HAL1-3A_ME LINE L1 2012 2205 -653 2 1379 207 0 0 0 chr1 104166063 104166086 -93029346 + (GAAA)n Simple_repeat Simple_repeat 4 26 0 2 1379 449 346 43 11 chr1 104166469 104166645 -93028787 + MTD LTR MaLR 1 182 -237 2 1379 291 210 88 43 chr1 104166645 104166762 -93028670 + RLTR11A LTR ERVK 1 173 -355 2 1379 2371 211 38 29 chr1 104166771 104167456 -93027976 + MYSERV16_I-int LTR ERVK 1053 1743 -583 2 1379 204 281 32 43 chr1 104167458 104167551 -93027881 + L3 LINE CR1 2756 2847 -1642 2 1379 1007 256 47 13 chr1 104167551 104167938 -93027494 + MYSERV-int LTR ERVK 6082 6481 -69 2 1379 2317 209 37 14 chr1 104167966 104168481 -93026951 + RLTR11A LTR ERVK 2 528 0 2 1379 295 304 32 32 chr1 104168481 104168576 -93026856 + MTD LTR MaLR 176 270 -149 2 1379 331 280 102 9 chr1 104168626 104168760 -93026672 + MTD LTR MaLR 222 377 -2 2 1379 252 0 0 0 chr1 104168779 104168807 -93026625 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1379 304 240 122 20 chr1 104168896 104168994 -93026438 - ORR1E LTR MaLR 0 374 267 2 1379 417 39 0 0 chr1 104168999 104169050 -93026382 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1379 519 273 136 0 chr1 104169050 104169204 -93026228 - ORR1E LTR MaLR -184 175 1 2 1379 264 186 0 0 chr1 104169682 104169741 -93025691 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1379 1713 67 0 4 chr1 104170094 104170320 -93025112 + L1_Mus1 LINE L1 6340 6564 -3 2 1379 1068 75 13 27 chr1 104170326 104170464 -93024968 + B1_Mus1 SINE Alu 1 140 -8 2 1379 294 29 0 0 chr1 104170464 104170499 -93024933 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1379 1068 75 13 27 chr1 104170499 104170510 -93024922 + B1_Mus1 SINE Alu 141 148 0 2 1379 30 89 0 0 chr1 104170519 104170598 -93024834 + AT_rich Low_complexity Low_complexity 1 79 0 2 1379 288 0 0 0 chr1 104171744 104171776 -93023656 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1379 473 366 120 19 chr1 104171845 104172104 -93023328 - B4A SINE B4 0 292 8 2 1379 416 403 0 42 chr1 104172273 104172488 -93022944 - ID_B1 SINE B4 -8 216 11 2 1379 3198 58 2 5 chr1 104172528 104172925 -93022507 + MTA_Mm LTR MaLR 1 396 0 2 1379 276 53 0 0 chr1 104172954 104172992 -93022440 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1379 637 325 41 5 chr1 104172993 104173188 -93022244 - ID_B1 SINE B4 -16 208 7 2 1379 198 0 0 0 chr1 104173212 104173234 -93022198 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 2 1379 438 139 0 0 chr1 104173236 104173308 -93022124 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1379 522 0 0 0 chr1 104174653 104174711 -93020721 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1379 532 261 45 99 chr1 104174711 104174932 -93020500 + ORR1D1 LTR MaLR 165 373 -1 2 1379 609 311 0 0 chr1 104175051 104175183 -93020249 - RSINE1 SINE B4 -31 134 3 2 1379 410 252 112 33 chr1 104175225 104175377 -93020055 + RCHARR1 DNA MER1_type 564 727 -247 2 1379 1111 163 0 0 chr1 104175378 104175562 -93019870 + L1VL4 LINE L1 551 734 -5568 2 1379 2023 110 42 0 chr1 104175543 104175878 -93019554 + MusHAL1 LINE L1 1049 1397 -1315 2 1379 7283 130 11 34 chr1 104175886 104177433 -93017999 + L1_Mus2 LINE L1 4644 6154 -412 2 1379 1007 111 7 0 chr1 104177433 104177577 -93017855 - B1_Mm SINE Alu -1 146 2 2 1379 6478 100 13 38 chr1 104177577 104178012 -93017420 + L1_Mus2 LINE L1 6155 6566 0 2 1379 682 201 196 0 chr1 104178051 104178240 -93017192 + URR1A DNA MER1_type 1 226 0 2 1379 564 343 23 0 chr1 104178319 104178494 -93016938 + B3A SINE B2 1 179 -19 2 1379 492 48 0 0 chr1 104178505 104178568 -93016864 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1379 297 75 0 0 chr1 104178586 104178626 -93016806 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1379 207 0 0 0 chr1 104178642 104178665 -93016767 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1379 1552 285 5 10 chr1 104178666 104179056 -93016376 - MTD LTR MaLR -31 388 1 2 1379 12824 126 22 6 chr1 104179132 104180821 -93014611 - L1VL4 LINE L1 -281 3536 1813 2 1379 4672 64 2 2 chr1 104180821 104181419 -93014013 - L1Md_F2 LINE L1 -12 6570 5973 2 1379 12824 126 22 6 chr1 104181419 104181882 -93013550 - L1VL4 LINE L1 -2005 1812 1349 2 1379 2240 79 3 3 chr1 104181879 104182185 -93013247 + L1_Mm LINE L1 5138 5443 -440 2 1379 2552 187 28 8 chr1 104182184 104183099 -93012333 - L1VL4 LINE L1 -2514 1303 426 2 1379 220 143 35 35 chr1 104183249 104183307 -93012125 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 2 1379 26 0 0 0 chr1 104183490 104183516 -93011916 + AT_rich Low_complexity Low_complexity 1 26 0 2 1379 547 313 55 5 chr1 104183768 104183967 -93011465 + B3 SINE B2 2 210 -6 2 1379 277 327 129 0 chr1 104184006 104184107 -93011325 + PB1 SINE Alu 4 117 -10 2 1379 338 331 47 70 chr1 104184118 104184290 -93011142 + B4A SINE B4 5 172 -120 3 1379 243 0 0 0 chr1 104184305 104184332 -93011100 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1379 437 50 17 0 chr1 104184336 104184396 -93011036 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1379 307 293 50 41 chr1 104184610 104184731 -93010701 - B1_Mur1 SINE Alu 0 149 28 3 1379 756 277 51 0 chr1 104185529 104185706 -93009726 - B3A SINE B2 0 198 13 3 1379 234 319 21 11 chr1 104185793 104185888 -93009544 + MARNA DNA Mariner 286 381 -205 3 1379 543 276 16 15 chr1 104186003 104186150 -93009282 + B4 SINE B4 97 244 -48 3 1379 233 224 20 0 chr1 104186150 104186199 -93009233 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 3 1379 2290 208 70 6 chr1 104186324 104186809 -93008623 + RLTR11A2 LTR ERVK 1 516 -11 3 1379 248 0 31 0 chr1 104187405 104187437 -93007995 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1379 387 0 0 0 chr1 104187793 104187836 -93007596 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1379 31 58 0 0 chr1 104187848 104187900 -93007532 + AT_rich Low_complexity Low_complexity 1 52 0 3 1379 282 347 0 0 chr1 104188110 104188205 -93007227 - PB1D10 SINE Alu -18 99 5 3 1379 777 11 0 0 chr1 104188271 104188361 -93007071 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1379 1006 82 7 0 chr1 104188532 104188667 -93006765 + B1_Mus1 SINE Alu 1 136 -12 3 1379 306 0 0 0 chr1 104188668 104188702 -93006730 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1379 342 0 0 0 chr1 104189009 104189047 -93006385 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1379 285 29 0 0 chr1 104189818 104189852 -93005580 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1379 1094 301 22 22 chr1 104190513 104190835 -93004597 + MTE2b LTR MaLR 10 331 -48 3 1379 376 91 52 0 chr1 104191119 104191196 -93004236 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 3 1379 252 326 137 16 chr1 104191262 104191452 -93003980 + L2 LINE L2 2743 2955 -464 3 1379 920 207 17 6 chr1 104191877 104192056 -93003376 - RLTR9B LTR ERVK 0 437 257 3 1379 1572 204 12 32 chr1 104192056 104192401 -93003031 - LTRIS3 LTR ERV1 0 512 175 3 1379 33536 76 11 7 chr1 104192401 104198314 -92997118 - L1Md_F3 LINE L1 -17 6567 217 3 1379 323 141 40 40 chr1 104198325 104198399 -92997033 - ETnERV2-int LTR ERVK -2 7404 7331 3 1379 630 255 94 70 chr1 104198530 104198887 -92996545 - RLTR9E LTR ERVK -7 402 1 3 1379 297 0 0 0 chr1 104198899 104198932 -92996500 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1379 366 100 0 0 chr1 104198934 104198984 -92996448 - ETnERV2-int LTR ERVK -28 7378 7329 3 1379 734 241 210 17 chr1 104198984 104199334 -92996098 - RLTR13D6 LTR ERVK -365 537 118 3 172 21549 183 27 21 chr1 104199334 104205806 -92989626 - ETnERV2-int LTR ERVK -236 7170 1 3 1380 960 224 160 52 chr1 104205814 104206177 -92989255 - RLTR9E LTR ERVK -7 402 1 3 1380 621 269 35 160 chr1 104206264 104206640 -92988792 - ETnERV2-int LTR ERVK -981 6425 6097 3 1380 1723 135 0 28 chr1 104206648 104206983 -92988449 - RMER16-int LTR ERVK -1230 4176 3898 3 1380 5227 165 12 0 chr1 104206984 104207887 -92987545 + Lx3B LINE L1 6050 6963 -10 3 1380 333 0 0 0 chr1 104207889 104207926 -92987506 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1380 185 188 31 0 chr1 104207951 104208015 -92987417 + A-rich Low_complexity Low_complexity 2 67 0 3 1380 29 0 0 0 chr1 104208165 104208194 -92987238 + AT_rich Low_complexity Low_complexity 1 29 0 3 1380 1705 321 75 41 chr1 104208246 104209263 -92986169 - Lx9 LINE L1 -67 7577 6527 3 1380 668 363 48 4 chr1 104209972 104210240 -92985192 + B4 SINE B4 3 282 -10 3 1380 2245 109 34 32 chr1 104210843 104210912 -92984520 - L1_Mus3 LINE L1 0 6638 6576 3 1380 4401 152 28 96 chr1 104210912 104211880 -92983552 - RLTR13D6 LTR ERVK 0 902 1 3 1380 2245 109 34 32 chr1 104211880 104212189 -92983243 - L1_Mus3 LINE L1 -63 6575 6259 3 1380 492 317 5 48 chr1 104212250 104212439 -92982993 + B3A SINE B2 2 182 -16 3 1380 2556 223 41 59 chr1 104212462 104213041 -92982391 + Lx9 LINE L1 4995 5544 -303 3 1380 203 0 0 36 chr1 104213041 104213069 -92982363 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 3 1380 2556 223 41 59 chr1 104213069 104213274 -92982158 + Lx9 LINE L1 5545 5764 -83 3 1380 858 162 0 16 chr1 104213278 104213460 -92981972 + CT-rich Low_complexity Low_complexity 2 180 0 3 1380 497 283 7 20 chr1 104213472 104213620 -92981812 + B1_Mm SINE Alu 1 146 -1 3 1380 698 268 8 89 chr1 104213624 104213870 -92981562 + Lx9 LINE L1 5803 6028 -1616 3 1380 383 353 17 8 chr1 104213991 104214111 -92981321 - B4A SINE B4 -169 123 3 3 1380 1547 240 69 15 chr1 104214761 104215151 -92980281 - RLTR16 LTR ERVK 0 505 95 3 1380 22 35 0 0 chr1 104215151 104215180 -92980252 + AT_rich Low_complexity Low_complexity 1 29 0 3 1380 241 207 0 33 chr1 104215247 104215307 -92980125 + GA-rich Low_complexity Low_complexity 1 58 0 3 1380 348 286 88 69 chr1 104215320 104215594 -92979838 + L1MC4a LINE L1 7364 7642 -240 3 1380 1867 134 10 16 chr1 104215803 104216147 -92979285 + L1_Mus3 LINE L1 6328 6638 0 3 1380 324 0 0 0 chr1 104216636 104216672 -92978760 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1380 3455 104 174 22 chr1 104217008 104217339 -92978093 - RMER17A LTR ERVK -16 735 321 3 1380 1031 112 6 0 chr1 104217339 104217500 -92977932 + (GA)n Simple_repeat Simple_repeat 1 162 0 3 1380 3455 104 174 22 chr1 104217500 104217806 -92977626 - RMER17A LTR ERVK -431 320 2 3 1380 1064 60 12 35 chr1 104217849 104218021 -92977411 + (TTTTC)n Simple_repeat Simple_repeat 4 171 0 3 1380 240 367 117 0 chr1 104218093 104218213 -92977219 - B4A SINE B4 0 292 159 3 1380 1537 230 36 81 chr1 104219172 104219667 -92975765 + RLTR1B LTR ERV1 1 512 0 3 1380 303 322 59 0 chr1 104219754 104219872 -92975560 - B4A SINE B4 -16 276 152 3 1380 2292 126 65 10 chr1 104220165 104220565 -92974867 - BGLII_Mus LTR ERVK 0 422 1 3 1380 257 244 21 75 chr1 104221377 104221470 -92973962 + MTD LTR MaLR 325 412 -7 3 1380 850 341 23 15 chr1 104221754 104222016 -92973416 + B4A SINE B4 2 265 -27 3 1380 1140 88 0 0 chr1 104222299 104222446 -92972986 + B1_Mus1 SINE Alu 2 148 0 3 1380 37 39 0 0 chr1 104222460 104222511 -92972921 + AT_rich Low_complexity Low_complexity 1 51 0 3 1380 624 307 176 3 chr1 104222580 104222865 -92972567 - MTEb LTR MaLR -41 338 5 3 1380 837 311 67 89 chr1 104224086 104224457 -92970975 + MTE2a LTR MaLR 1 363 -16 3 1380 247 300 44 11 chr1 104226029 104226120 -92969312 + MLT1A LTR MaLR 13 106 -268 3 1380 226 329 0 23 chr1 104226161 104226248 -92969184 - MLT1A1 LTR MaLR -22 386 302 3 1380 468 397 53 0 chr1 104227022 104227211 -92968221 - ID_B1 SINE B4 -21 203 5 3 1380 525 345 79 0 chr1 104227644 104227821 -92967611 - B4 SINE B4 -99 193 3 3 1380 623 151 5 18 chr1 104227850 104227970 -92967462 + B1_Mur4 SINE Alu 14 150 0 3 1380 893 286 24 99 chr1 104230888 104231222 -92964210 + MTE2a LTR MaLR 71 379 0 3 1380 575 233 77 45 chr1 104232623 104232843 -92962589 - RLTR45 LTR ERVK 0 482 256 3 1380 266 360 104 73 chr1 104233152 104233344 -92962088 - B4 SINE B4 -93 199 2 3 1380 191 246 30 30 chr1 104234071 104234138 -92961294 - MIRm SINE MIR -95 181 115 3 1380 402 57 0 0 chr1 104234564 104234617 -92960815 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1380 1196 314 67 52 chr1 104234750 104235349 -92960083 + RLTR26 LTR ERVK 1 635 -7 3 1380 248 258 10 0 chr1 104235786 104235883 -92959549 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 3 1380 1840 185 8 3 chr1 104236258 104236611 -92958821 - RLTR15 LTR ERVK -4 355 1 3 1380 681 244 125 0 chr1 104236613 104236789 -92958643 + MTD LTR MaLR 208 405 -14 3 1380 457 358 36 6 chr1 104236794 104236960 -92958472 + B4A SINE B4 104 274 -18 3 1380 378 0 0 0 chr1 104236975 104237017 -92958415 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1380 1491 68 122 0 chr1 104237616 104237838 -92957594 - L1_Mus1 LINE L1 -557 6010 5762 3 1380 4482 99 3 0 chr1 104237835 104238461 -92956971 + L1_Mus1 LINE L1 5109 5736 -147 3 1380 12092 125 5 22 chr1 104238460 104240188 -92955244 - L1Md_F LINE L1 -642 3175 1469 3 1380 243 0 0 0 chr1 104240188 104240215 -92955217 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1380 12092 170 28 67 chr1 104240215 104241508 -92953924 - L1Md_F LINE L1 -2349 1468 231 3 1380 306 389 50 7 chr1 104242050 104242190 -92953242 + RSINE1 SINE B4 3 148 -17 3 1380 966 232 24 5 chr1 104242520 104242728 -92952704 - ORR1B1 LTR MaLR -8 386 175 3 1380 239 377 96 13 chr1 104243366 104243522 -92951910 + AmnSINE1 SINE SINE 332 500 -75 3 1380 435 52 0 0 chr1 104244060 104244118 -92951314 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1380 656 353 0 89 chr1 104244118 104244377 -92951055 + B4A SINE B4 2 241 -51 3 1380 388 352 21 21 chr1 104244361 104244506 -92950926 + B4A SINE B4 138 282 -10 3 1380 417 39 0 0 chr1 104244563 104244614 -92950818 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1380 1025 88 44 6 chr1 104246014 104246174 -92949258 + L1_Mus2 LINE L1 6400 6565 -1 3 1380 233 340 11 11 chr1 104248147 104248242 -92947190 + B4A SINE B4 3 97 -195 3 1380 2154 203 34 5 chr1 104248710 104249150 -92946282 + RLTR25B LTR ERVK 1 453 -650 3 1380 2274 166 51 40 chr1 104249134 104249587 -92945845 + RLTR25B LTR ERVK 571 1028 0 3 1380 397 362 46 36 chr1 104250440 104250635 -92944797 + B3A SINE B2 2 198 0 3 1380 240 0 75 0 chr1 104251159 104251199 -92944233 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1380 378 0 0 0 chr1 104251262 104251304 -92944128 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1380 1097 100 6 0 chr1 104251342 104251512 -92943920 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 1380 906 115 0 0 chr1 104251544 104251674 -92943758 - B1_Mus1 SINE Alu -18 130 1 3 1380 291 355 18 0 chr1 104251674 104251784 -92943648 - MIR SINE MIR -113 149 38 3 1380 1197 274 58 20 chr1 104252583 104252929 -92942503 + ORR1E LTR MaLR 1 359 0 3 1380 22 0 0 0 chr1 104254039 104254061 -92941371 + AT_rich Low_complexity Low_complexity 1 22 0 3 1380 2412 137 44 44 chr1 104254453 104254933 -92940499 - RLTR45 LTR ERVK 0 482 3 4 1380 590 337 42 46 chr1 104255055 104255338 -92940094 + B4 SINE B4 7 288 -4 4 1380 252 275 11 21 chr1 104255856 104255949 -92939483 + CT-rich Low_complexity Low_complexity 2 93 0 4 1380 321 384 7 35 chr1 104255950 104256093 -92939339 - B1F SINE Alu -10 139 1 4 1380 213 39 0 0 chr1 104256234 104256260 -92939172 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1380 319 261 65 0 chr1 104256350 104256442 -92938990 + MTEa LTR MaLR 16 113 -266 4 1380 484 323 81 47 chr1 104257121 104257397 -92938035 + ORR1E LTR MaLR 5 270 -100 4 1380 3420 50 28 7 chr1 104257409 104257836 -92937596 + RLTR10C LTR ERVK 1 436 0 4 1380 2153 60 0 4 chr1 104257836 104258104 -92937328 + MMERVK10C-int LTR ERVK 1 267 -7314 4 1380 247 179 8 79 chr1 104258149 104258276 -92937156 + A-rich Low_complexity Low_complexity 2 119 0 4 1380 377 44 0 0 chr1 104258276 104258321 -92937111 + RLTR10-int LTR ERVK 93 137 -6405 4 1380 1865 34 9 4 chr1 104258324 104258557 -92936875 + RLTR10-int LTR ERVK 652 885 -1102 4 1380 18853 48 0 3 chr1 104258526 104260833 -92934599 + MMERVK10C-int LTR ERVK 3512 5810 -1771 4 1380 6961 60 14 45 chr1 104260819 104261310 -92934122 + MMERVK10C-int LTR ERVK 6646 7138 -443 4 1380 192 40 0 0 chr1 104261310 104261335 -92934097 + (CAA)n Simple_repeat Simple_repeat 1 25 0 4 1380 6961 60 14 45 chr1 104261335 104261809 -92933623 + MMERVK10C-int LTR ERVK 7139 7580 -1 4 1380 3505 38 28 7 chr1 104261809 104262236 -92933196 + RLTR10C LTR ERVK 1 436 0 4 1380 309 297 11 0 chr1 104262236 104262327 -92933105 + ORR1E LTR MaLR 288 379 0 4 1380 244 256 11 11 chr1 104262451 104262538 -92932894 + Charlie5 DNA MER1_type 35 121 -2503 4 1380 348 43 0 0 chr1 104262824 104262870 -92932562 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1380 351 362 83 36 chr1 104262870 104263062 -92932370 - B4A SINE B4 -23 269 69 4 1380 28 29 0 0 chr1 104263513 104263548 -92931884 + AT_rich Low_complexity Low_complexity 1 35 0 4 1380 354 23 0 0 chr1 104263566 104263609 -92931823 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1380 225 65 0 0 chr1 104263609 104263639 -92931793 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1380 565 290 119 32 chr1 104263780 104264034 -92931398 + MTEa LTR MaLR 73 348 -31 4 1380 345 24 0 0 chr1 104265048 104265090 -92930342 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1380 423 319 106 19 chr1 104265129 104265289 -92930143 - B4A SINE B4 -35 257 84 4 1380 3290 76 11 5 chr1 104265293 104265729 -92929703 - L1_Mus1 LINE L1 0 6567 6129 4 1380 1359 131 0 0 chr1 104265730 104265936 -92929496 + L1_Mm LINE L1 4940 5145 -738 4 1380 223 312 0 61 chr1 104265951 104266033 -92929399 - B4A SINE B4 -211 81 5 4 1380 1063 274 152 6 chr1 104266088 104266444 -92928988 + MTD LTR MaLR 4 411 -8 4 1380 219 224 15 43 chr1 104268040 104268109 -92927323 - MIRc SINE MIR -81 187 111 4 1380 756 320 129 3 chr1 104268270 104268580 -92926852 - ORR1E LTR MaLR -7 352 4 4 1380 22 0 0 0 chr1 104268704 104268726 -92926706 + AT_rich Low_complexity Low_complexity 1 22 0 4 1380 1881 261 86 65 chr1 104270436 104270732 -92924700 - RLTR25B LTR ERVK -239 864 555 4 1380 687 84 0 0 chr1 104270732 104270827 -92924605 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 4 1380 1881 217 44 42 chr1 104270827 104271287 -92924145 - RLTR25B LTR ERVK -533 570 91 4 1380 561 155 21 0 chr1 104271303 104271400 -92924032 - B1_Mur4 SINE Alu -9 141 43 4 1380 194 398 0 11 chr1 104272000 104272094 -92923338 + MIR SINE MIR 63 155 -107 4 1380 265 361 36 0 chr1 104272396 104272479 -92922953 - B4 SINE B4 0 292 207 4 1380 232 372 8 24 chr1 104272701 104272825 -92922607 - RLTR17 LTR ERVK -283 409 288 4 1380 476 341 151 0 chr1 104273004 104273183 -92922249 - B4 SINE B4 -85 207 2 4 1380 352 299 99 42 chr1 104273297 104273510 -92921922 - MER44A DNA MER2_type -113 226 2 4 1380 295 281 12 12 chr1 104274384 104274467 -92920965 + B4A SINE B4 3 85 -207 4 1380 216 0 0 0 chr1 104274630 104274654 -92920778 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1380 22 0 0 0 chr1 104274679 104274701 -92920731 + AT_rich Low_complexity Low_complexity 1 22 0 4 1380 435 191 24 0 chr1 104275015 104275099 -92920333 - RMER19B LTR ERVK 0 902 817 4 1380 2542 219 94 21 chr1 104275099 104275715 -92919717 - RMER19B LTR ERVK -241 661 1 4 1380 309 153 16 63 chr1 104276048 104276111 -92919321 - HAL1-3A_ME LINE L1 -824 2034 1975 4 1380 488 338 82 15 chr1 104276115 104276385 -92919047 - B4A SINE B4 -4 288 1 4 1380 333 68 0 0 chr1 104277277 104277321 -92918111 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1380 456 35 0 0 chr1 104277338 104277396 -92918036 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1380 502 357 18 66 chr1 104277440 104277668 -92917764 - B4 SINE B4 -74 218 2 4 1380 282 56 0 0 chr1 104277758 104277794 -92917638 + (TATG)n Simple_repeat Simple_repeat 1 36 0 4 1380 486 266 60 45 chr1 104277899 104278033 -92917399 - B4 SINE B4 -155 137 2 4 1380 1062 230 58 90 chr1 104278168 104278545 -92916887 - RLTR9A LTR ERVK -3 365 1 4 1380 9582 225 37 4 chr1 104279101 104281107 -92914325 - ETnERV2-int LTR ERVK -1251 6155 4084 4 1380 8527 25 0 0 chr1 104281203 104282260 -92913172 - L1Md_A LINE L1 0 6582 5526 4 1380 2489 337 50 54 chr1 104282262 104283255 -92912177 - ETnERV2-int LTR ERVK -2963 3204 2219 4 1380 2010 104 3 13 chr1 104283255 104283556 -92911876 - L1Md_F2 LINE L1 -2 6580 6283 4 1380 2551 326 38 34 chr1 104283556 104285113 -92910319 - ETnERV2-int LTR ERVK -3949 2218 773 4 1380 37822 16 1 7 chr1 104285253 104290422 -92905010 + L1Md_A LINE L1 457 5586 -297 4 1380 8805 14 0 0 chr1 104290422 104291417 -92904015 + L1Md_A LINE L1 5587 6581 -1 4 1380 262 294 21 47 chr1 104291533 104291726 -92903706 - ETnERV2-int LTR ERVK -3123 191 4 4 1380 243 0 0 0 chr1 104292030 104292057 -92903375 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1380 300 127 0 0 chr1 104292129 104292184 -92903248 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 4 1380 1096 75 0 26 chr1 104292510 104292661 -92902771 + B1_Mus1 SINE Alu 1 147 -1 4 1380 549 0 0 0 chr1 104292661 104292722 -92902710 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1380 11569 188 30 26 chr1 104293295 104293936 -92901496 - Lx LINE L1 -2 6652 6001 4 1380 273 119 0 0 chr1 104293936 104293978 -92901454 + U2 snRNA snRNA 1 42 -146 4 1380 11569 188 30 26 chr1 104293978 104296609 -92898823 - Lx LINE L1 -2 6000 3320 4 1380 418 296 15 0 chr1 104296619 104296973 -92898459 + (TG)n Simple_repeat Simple_repeat 1 359 0 4 1380 754 314 84 8 chr1 104296973 104297236 -92898196 - B4 SINE B4 0 292 10 4 1380 582 301 40 9 chr1 104297245 104297470 -92897962 - MLT2C1 LTR ERVL -165 232 1 4 1380 468 0 0 0 chr1 104297603 104297655 -92897777 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1380 191 36 36 0 chr1 104297995 104298023 -92897409 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1380 381 319 47 27 chr1 104298569 104298717 -92896715 + B4A SINE B4 90 240 -52 4 1380 224 111 22 0 chr1 104298798 104298843 -92896589 + (TATG)n Simple_repeat Simple_repeat 1 46 0 4 1380 874 272 122 55 chr1 104299020 104299363 -92896069 + MTEb LTR MaLR 4 369 -10 4 1380 1203 0 20 0 chr1 104299511 104299658 -92895774 + (CA)n Simple_repeat Simple_repeat 2 151 0 4 1380 786 301 43 5 chr1 104300968 104301175 -92894257 - ID_B1 SINE B4 -2 222 8 4 1380 306 280 67 19 chr1 104301414 104301518 -92893914 - PB1 SINE Alu -90 221 31 4 1380 499 335 21 27 chr1 104301573 104301760 -92893672 - B4A SINE B4 -6 286 101 4 1380 649 280 101 90 chr1 104302487 104302844 -92892588 - RMER13A LTR ERVK -488 372 12 4 1380 626 359 67 30 chr1 104303018 104303285 -92892147 - B4 SINE B4 -2 290 14 4 1380 342 67 0 0 chr1 104303648 104303693 -92891739 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1380 381 43 0 0 chr1 104303867 104303914 -92891518 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1380 409 346 53 15 chr1 104304433 104304644 -92890788 - B4A SINE B4 -8 284 8 4 1380 21 57 0 0 chr1 104304811 104304846 -92890586 + AT_rich Low_complexity Low_complexity 1 35 0 4 1380 438 287 0 10 chr1 104305288 104305390 -92890042 - B1_Mur1 SINE Alu 0 149 49 4 1380 1076 64 0 0 chr1 104305824 104305965 -92889467 - B1_Mus1 SINE Alu 0 148 8 4 1380 384 22 0 0 chr1 104306082 104306127 -92889305 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1380 288 0 0 0 chr1 104306144 104306176 -92889256 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1380 1500 279 33 2 chr1 104306481 104306880 -92888552 + MTD LTR MaLR 1 411 -8 4 1380 341 328 14 43 chr1 104307241 104307381 -92888051 + MTEa LTR MaLR 244 379 0 4 1380 282 29 0 0 chr1 104307558 104307593 -92887839 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1380 462 348 6 19 chr1 104307603 104307764 -92887668 - RSINE1 SINE B4 -4 161 3 4 1380 191 286 0 35 chr1 104308325 104308383 -92887049 - L2 LINE L2 -543 2876 2821 4 1380 2731 310 101 7 chr1 104308467 104309822 -92885610 - RMER1A Other Other -5 1025 1 4 1380 539 311 24 0 chr1 104309905 104310072 -92885360 - RMER1B Other Other -851 215 45 4 1380 417 20 0 0 chr1 104310622 104310672 -92884760 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1380 343 224 15 0 chr1 104310917 104310984 -92884448 + B4 SINE B4 4 71 -221 4 1380 279 388 45 15 chr1 104311021 104311220 -92884212 - RMER5 LTR ERV1 -215 319 115 4 1380 348 322 34 34 chr1 104311424 104311543 -92883889 + RSINE1 SINE B4 6 124 -41 4 1380 270 56 0 0 chr1 104311590 104311626 -92883806 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1380 512 83 73 0 chr1 104311628 104311737 -92883695 + (CAGAGA)n Simple_repeat Simple_repeat 4 120 0 4 1380 3023 215 138 41 chr1 104312880 104313201 -92882231 - RMER13B LTR ERVK -3 905 541 4 1380 237 33 0 0 chr1 104313201 104313231 -92882201 + (GCTTG)n Simple_repeat Simple_repeat 5 34 0 4 1380 3023 215 138 41 chr1 104313231 104313555 -92881877 - RMER13B LTR ERVK -368 540 184 4 1380 324 0 0 0 chr1 104313555 104313591 -92881841 + (TGG)n Simple_repeat Simple_repeat 3 38 0 4 1380 3023 215 138 41 chr1 104313591 104313757 -92881675 - RMER13B LTR ERVK -725 183 17 4 1380 279 0 0 0 chr1 104313757 104313788 -92881644 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1380 7075 91 7 8 chr1 104313800 104315380 -92880052 - L1_Mus1 LINE L1 -7 6560 4987 4 1380 907 34 17 0 chr1 104316079 104316198 -92879234 + (GA)n Simple_repeat Simple_repeat 1 121 0 4 1380 852 287 103 65 chr1 104316984 104317335 -92878097 - ORR1D2 LTR MaLR -6 364 1 4 1380 388 99 28 0 chr1 104317367 104317438 -92877994 + (CATA)n Simple_repeat Simple_repeat 2 74 0 4 1380 246 323 77 14 chr1 104318244 104318405 -92877027 + MIRc SINE MIR 21 195 -73 4 1380 1322 259 9 22 chr1 104318423 104318746 -92876686 - MTEa LTR MaLR -5 374 56 4 1380 21 0 0 0 chr1 104319136 104319157 -92876275 + AT_rich Low_complexity Low_complexity 1 21 0 4 1380 429 90 0 0 chr1 104319988 104320055 -92875377 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1380 628 388 19 30 chr1 104320190 104320456 -92874976 + B4 SINE B4 16 278 -14 5 1380 490 338 54 22 chr1 104320786 104321064 -92874368 + B4A SINE B4 1 287 -5 5 1380 7046 94 7 1 chr1 104321239 104322394 -92873038 - L1_Mus1 LINE L1 0 6567 5406 5 1380 1114 275 86 68 chr1 104323140 104324143 -92871289 - RMER12 LTR ERVK 0 1322 493 5 1380 4514 124 114 6 chr1 104324220 104324998 -92870434 - Lx3_Mus LINE L1 0 7009 6148 5 1380 25419 123 52 18 chr1 104324998 104327312 -92868120 - L1_Mur1 LINE L1 -24 5862 3478 5 1380 302 0 26 0 chr1 104327312 104327350 -92868082 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 1380 25419 123 52 18 chr1 104327350 104327486 -92867946 - L1_Mur1 LINE L1 -2409 3477 3337 5 1380 258 81 0 0 chr1 104327486 104327523 -92867909 + (TATG)n Simple_repeat Simple_repeat 2 38 0 5 1380 25419 150 147 21 chr1 104327523 104330461 -92864971 - L1_Mur1 LINE L1 -2550 3336 16 5 1380 1423 198 65 3 chr1 104330560 104330854 -92864578 - RMER12 LTR ERVK -1007 315 4 5 1380 391 346 59 0 chr1 104331260 104331413 -92864019 - B4A SINE B4 -19 273 112 5 1380 305 333 118 61 chr1 104331506 104331768 -92863664 - MTE2b LTR MaLR -31 348 72 5 1380 473 105 12 0 chr1 104332388 104332474 -92862958 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 1380 387 350 64 93 chr1 104332707 104332987 -92862445 - MTEa LTR MaLR -59 320 49 5 1381 325 354 0 0 chr1 104334289 104334385 -92861047 + MTE2a LTR MaLR 3 98 -281 5 1381 1041 305 17 3 chr1 104334399 104334692 -92860740 + MTE2a LTR MaLR 72 368 -11 5 1381 557 372 54 39 chr1 104335009 104335289 -92860143 + B4A SINE B4 8 291 -1 5 1381 243 303 0 0 chr1 104335303 104335392 -92860040 + GA-rich Low_complexity Low_complexity 2 90 0 5 1381 481 304 62 19 chr1 104335841 104335896 -92859536 + ID SINE ID 22 83 -141 5 1381 233 336 83 33 chr1 104335896 104336016 -92859416 + B1F2 SINE Alu 1 126 -23 5 1381 910 26 17 0 chr1 104336110 104336227 -92859205 + (TCTA)n Simple_repeat Simple_repeat 1 119 0 5 1381 742 216 7 0 chr1 104336229 104336368 -92859064 - B1_Mur4 SINE Alu -6 144 5 5 1381 369 355 82 5 chr1 104336378 104336562 -92858870 - B3A SINE B2 0 198 1 5 1381 356 380 20 5 chr1 104336894 104337095 -92858337 - ID_B1 SINE B4 -17 207 4 5 1381 318 294 93 19 chr1 104337767 104338149 -92857283 - L1_Mur3 LINE L1 -2849 3294 2900 5 1381 371 326 52 22 chr1 104338276 104338411 -92857021 + B4A SINE B4 5 143 -149 5 1381 201 238 0 0 chr1 104338600 104338642 -92856790 + GA-rich Low_complexity Low_complexity 2 43 0 5 1381 23 0 0 0 chr1 104339673 104339696 -92855736 + AT_rich Low_complexity Low_complexity 1 23 0 5 1381 626 311 68 25 chr1 104339932 104340212 -92855220 - B4A SINE B4 0 292 1 5 1381 980 258 96 6 chr1 104340574 104340917 -92854515 - ORR1D1 LTR MaLR 0 374 1 5 1381 4230 266 50 32 chr1 104340917 104341640 -92853792 - ORR1D1-int LTR MaLR 0 1370 618 5 1381 1182 181 14 9 chr1 104341640 104341863 -92853569 - URR1A DNA MER1_type -1 225 2 5 1381 4230 266 50 32 chr1 104341863 104342369 -92853063 - ORR1D1-int LTR MaLR -753 617 119 5 1381 327 336 91 31 chr1 104342426 104342735 -92852697 - ORR1D1 LTR MaLR -2 368 21 5 1381 972 26 0 0 chr1 104343202 104343317 -92852115 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 5 1381 187 373 13 13 chr1 104343816 104343892 -92851540 - MIR SINE MIR -80 128 53 5 1381 364 315 15 51 chr1 104344321 104344458 -92850974 - B3A SINE B2 -2 196 65 5 1381 499 365 40 35 chr1 104344918 104345117 -92850315 - B3A SINE B2 -14 202 3 5 1381 478 338 31 18 chr1 104345146 104345309 -92850123 - B4 SINE B4 -88 204 40 5 1381 494 289 48 34 chr1 104345402 104345610 -92849822 + MER2 DNA MER2_type 86 296 -49 5 1381 279 183 137 27 chr1 104346188 104346261 -92849171 + MTC LTR MaLR 1 81 -340 5 1381 454 344 47 16 chr1 104346311 104346503 -92848929 - ID_B1 SINE B4 -21 203 6 5 1381 280 314 75 98 chr1 104346614 104346787 -92848645 - MTEb LTR MaLR -9 370 202 5 1381 1238 89 74 55 chr1 104346895 104347097 -92848335 + L1_Mus2 LINE L1 6360 6565 -1 5 1381 455 82 0 0 chr1 104347102 104347175 -92848257 + L1Md_F3 LINE L1 6500 6572 -12 5 1381 703 257 18 61 chr1 104347487 104347715 -92847717 - Tigger15a DNA TcMar -16 699 482 5 1381 260 314 65 97 chr1 104348105 104348260 -92847172 - B3A SINE B2 -48 150 1 5 1381 1200 334 91 35 chr1 104348416 104349297 -92846135 - Lx8 LINE L1 -31 7442 6513 5 1381 375 41 0 0 chr1 104349497 104349546 -92845886 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1381 448 387 27 0 chr1 104349676 104349826 -92845606 + RSINE1 SINE B4 6 159 -6 5 1381 231 125 0 0 chr1 104349829 104349869 -92845563 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1381 239 213 33 0 chr1 104349869 104349930 -92845502 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 5 1381 280 294 41 25 chr1 104350053 104350175 -92845257 - L1M5 LINE L1 -400 5724 5601 5 1381 1788 229 37 139 chr1 104350395 104351073 -92844359 - RMER19C LTR ERVK -2 609 1 5 1381 346 332 68 103 chr1 104352347 104352708 -92842724 - MTEb LTR MaLR -12 367 10 5 1381 561 42 0 0 chr1 104352719 104352791 -92842641 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1381 208 288 14 14 chr1 104353248 104353322 -92842110 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1381 222 338 12 24 chr1 104353555 104353637 -92841795 - B2_Mm1t SINE B2 -112 81 1 5 1381 210 37 0 0 chr1 104354135 104354162 -92841270 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1381 1258 58 69 6 chr1 104354165 104354338 -92841094 - B2_Mm2 SINE B2 -9 186 3 5 1381 993 150 140 0 chr1 104354548 104354741 -92840691 - URR1A DNA MER1_type -5 221 2 5 1381 528 217 57 14 chr1 104354829 104354969 -92840463 - RSINE1 SINE B4 -19 146 1 5 1381 299 172 74 29 chr1 104354979 104355072 -92840360 - L1M4 LINE L1 -581 5598 5505 5 1381 243 261 0 0 chr1 104355691 104355760 -92839672 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1381 186 325 26 0 chr1 104356174 104356251 -92839181 - L2a LINE L2 -15 3411 3333 5 1381 4811 15 0 0 chr1 104356318 104356864 -92838568 + L1Md_A LINE L1 6037 6582 0 5 1381 3042 23 0 0 chr1 104357943 104358289 -92837143 - ORR1A0 LTR MaLR 0 346 1 5 1381 1913 34 0 0 chr1 104358289 104358523 -92836909 - ORR1A0-int LTR MaLR 0 1792 1559 5 1381 19830 26 0 0 chr1 104358527 104361507 -92833925 - L1Md_T LINE L1 0 6582 3603 5 1381 11153 77 6 1 chr1 104361507 104363071 -92832361 - ORR1A0-int LTR MaLR -220 1572 1 5 1381 3033 26 0 0 chr1 104363071 104363417 -92832015 - ORR1A0 LTR MaLR 0 346 1 5 1381 357 330 19 0 chr1 104363746 104363852 -92831580 + RSINE1 SINE B4 5 112 -53 5 1381 29 28 0 0 chr1 104363939 104363975 -92831457 + AT_rich Low_complexity Low_complexity 1 36 0 5 1381 288 0 0 0 chr1 104364563 104364595 -92830837 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 1381 501 324 44 24 chr1 104364859 104365031 -92830401 + RMER5 LTR ERV1 225 402 -132 5 1381 180 111 0 0 chr1 104365031 104365058 -92830374 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1381 501 324 44 24 chr1 104365058 104365135 -92830297 + RMER5 LTR ERV1 403 479 -55 5 1381 396 0 0 0 chr1 104365152 104365196 -92830236 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1381 878 107 14 0 chr1 104365505 104365645 -92829787 + (GAGAA)n Simple_repeat Simple_repeat 4 145 0 5 1381 1011 243 78 62 chr1 104365650 104366085 -92829347 - RMER10A LTR ERVL 0 442 1 5 1381 705 372 19 22 chr1 104366843 104367110 -92828322 - B4A SINE B4 -2 290 25 5 1381 185 140 0 23 chr1 104367432 104367476 -92827956 + T-rich Low_complexity Low_complexity 4 46 0 5 1381 270 106 0 0 chr1 104367476 104367523 -92827909 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1381 279 114 0 0 chr1 104367938 104367982 -92827450 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1381 673 262 159 0 chr1 104367985 104368237 -92827195 - B4A SINE B4 0 292 1 5 1381 1249 272 45 135 chr1 104368592 104369264 -92826168 - RMER19C LTR ERVK 0 611 1 5 1381 228 355 59 18 chr1 104369289 104369458 -92825974 - MIR SINE MIR -56 206 31 5 1381 517 280 27 54 chr1 104369523 104369708 -92825724 + B3A SINE B2 3 182 -16 5 1381 351 0 0 0 chr1 104370440 104370479 -92824953 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1381 494 376 46 14 chr1 104370617 104370833 -92824599 - B4 SINE B4 0 292 70 5 1381 18294 145 7 23 chr1 104371012 104372313 -92823119 - L1_Mus4 LINE L1 -3 6633 5369 5 1381 1628 107 16 4 chr1 104372313 104372557 -92822875 - L1_Mus1 LINE L1 0 6567 6321 5 1381 22024 159 26 23 chr1 104372557 104374946 -92820486 - L1_Mus4 LINE L1 -509 5368 3294 5 1381 315 0 0 0 chr1 104374946 104374981 -92820451 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1381 324 0 0 0 chr1 104374981 104375016 -92820416 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1381 22024 161 22 11 chr1 104375016 104377567 -92817865 - L1_Mus4 LINE L1 -2584 3299 705 5 1381 492 18 0 0 chr1 104377675 104377732 -92817700 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1381 231 152 0 0 chr1 104378052 104378098 -92817334 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 5 1381 294 123 0 0 chr1 104378433 104378490 -92816942 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1381 274 315 14 0 chr1 104378728 104378801 -92816631 - B4A SINE B4 -217 75 2 5 1381 242 383 91 0 chr1 104379702 104379856 -92815576 - B4A SINE B4 -19 273 106 5 1381 1247 246 92 15 chr1 104380358 104380696 -92814736 - MTEa LTR MaLR -5 374 11 5 1381 357 240 58 73 chr1 104380990 104381139 -92814293 - RMER17D LTR ERVK -329 560 419 5 1381 333 0 0 0 chr1 104381139 104381176 -92814256 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1381 357 240 58 73 chr1 104381176 104381300 -92814132 - RMER17D LTR ERVK -471 418 291 5 1381 22 0 0 0 chr1 104381311 104381333 -92814099 + AT_rich Low_complexity Low_complexity 1 22 0 5 1381 336 48 0 0 chr1 104381500 104381542 -92813890 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1381 9563 147 20 5 chr1 104381542 104384200 -92811232 - Lx3A LINE L1 -13 6968 4272 5 1381 7537 118 11 1 chr1 104384198 104385385 -92810047 + L1_Mur1 LINE L1 2534 3732 -2154 5 1381 4776 78 2 0 chr1 104385382 104386009 -92809423 - L1Md_F2 LINE L1 -149 5734 5107 5 1381 5520 99 33 4 chr1 104386009 104386826 -92808606 + L1Md_F2 LINE L1 5728 6568 -14 5 1381 225 152 0 0 chr1 104386907 104386953 -92808479 + L1_Mur1 LINE L1 3716 3761 -2125 5 1381 7024 67 0 2 chr1 104386950 104387848 -92807584 - L1Md_F2 LINE L1 -141 5742 4847 5 1381 6470 55 5 1 chr1 104387848 104388666 -92806766 + L1Md_F2 LINE L1 5754 6574 -8 5 1381 3321 124 8 0 chr1 104388682 104389215 -92806217 + L1_Mur1 LINE L1 3756 4292 -1594 5 1381 22 0 0 0 chr1 104389526 104389548 -92805884 + AT_rich Low_complexity Low_complexity 1 22 0 5 1381 2470 259 107 71 chr1 104390055 104390928 -92804504 - RMER13B LTR ERVK 0 908 5 5 1381 1084 192 27 0 chr1 104391061 104391280 -92804152 - URR1A DNA MER1_type 0 226 2 6 1381 29 0 0 0 chr1 104391444 104391473 -92803959 + AT_rich Low_complexity Low_complexity 1 29 0 6 1381 324 350 45 20 chr1 104391490 104391688 -92803744 + MER2 DNA MER2_type 127 329 -16 6 1381 370 324 80 40 chr1 104391697 104391848 -92803584 + RSINE1 SINE B4 9 165 0 6 1381 315 49 0 0 chr1 104391873 104391914 -92803518 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1381 23 86 0 0 chr1 104392466 104392524 -92802908 + AT_rich Low_complexity Low_complexity 1 58 0 6 1381 21 0 0 0 chr1 104392548 104392569 -92802863 + AT_rich Low_complexity Low_complexity 1 21 0 6 1381 274 143 32 0 chr1 104392834 104392897 -92802535 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1381 1921 89 18 11 chr1 104393242 104393526 -92801906 + L1_Mus1 LINE L1 6282 6567 0 6 1381 439 261 11 0 chr1 104393552 104393644 -92801788 + B3 SINE B2 1 93 -123 6 1381 324 193 0 0 chr1 104393887 104394001 -92801431 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1381 695 331 90 30 chr1 104394039 104394307 -92801125 - B4 SINE B4 -2 290 7 6 1381 345 345 0 75 chr1 104395052 104395212 -92800220 + B4 SINE B4 2 149 -143 6 1381 967 225 32 0 chr1 104395270 104395488 -92799944 + URR1B DNA MER1_type 1 225 0 6 1381 336 125 109 0 chr1 104395632 104395696 -92799736 + B1_Mur4 SINE Alu 80 150 0 6 1381 306 353 15 29 chr1 104395886 104396023 -92799409 - RMER15 LTR ERVL -18 557 423 6 1381 261 0 0 0 chr1 104396807 104396836 -92798596 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1381 512 366 15 30 chr1 104396847 104397044 -92798388 - B4 SINE B4 -18 274 81 6 1381 3538 60 7 2 chr1 104397079 104397530 -92797902 - L1Md_F2 LINE L1 -15 6567 6115 6 1381 242 343 27 36 chr1 104398586 104398698 -92796734 - MER2 DNA MER2_type -12 333 223 6 1381 674 93 9 0 chr1 104399201 104399309 -92796123 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1381 198 208 0 0 chr1 104399427 104399480 -92795952 + CT-rich Low_complexity Low_complexity 2 54 0 6 1381 336 361 138 32 chr1 104399502 104399691 -92795741 - B4A SINE B4 -81 211 3 6 1381 1099 117 0 11 chr1 104400203 104400385 -92795047 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1381 506 203 8 0 chr1 104400387 104400510 -92794922 + CT-rich Low_complexity Low_complexity 2 125 0 6 1381 248 321 37 0 chr1 104400825 104400906 -92794526 + B4 SINE B4 1 84 -208 6 1381 183 42 0 0 chr1 104400926 104400950 -92794482 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 1381 252 200 0 0 chr1 104401103 104401168 -92794264 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1381 263 318 0 33 chr1 104401246 104401337 -92794095 + B4 SINE B4 168 255 -37 6 1381 383 210 264 8 chr1 104402148 104402273 -92793159 + MTE2b LTR MaLR 160 316 -63 6 1381 339 322 8 24 chr1 104403931 104404055 -92791377 + B4A SINE B4 171 292 0 6 1381 453 36 0 0 chr1 104404066 104404121 -92791311 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1381 1174 55 0 7 chr1 104404743 104404889 -92790543 - B1_Mus2 SINE Alu -1 146 2 6 1381 308 138 0 15 chr1 104404929 104404995 -92790437 - Lx LINE L1 -5 6649 6585 6 1381 433 282 53 17 chr1 104405626 104405720 -92789712 - RLTR20C LTR ERVK -6 545 434 6 1381 594 28 0 0 chr1 104405720 104405792 -92789640 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1381 433 278 52 15 chr1 104405792 104405849 -92789583 - RLTR20C LTR ERVK -101 433 377 6 1381 1255 196 0 0 chr1 104406252 104406476 -92788956 + L1_Mur2 LINE L1 5006 5229 -648 6 1381 4967 127 10 4 chr1 104406481 104407256 -92788176 + L1_Mus4 LINE L1 5852 6631 -5 6 1381 1239 69 0 17 chr1 104407262 104407439 -92787993 + L1Md_F3 LINE L1 6409 6582 -2 6 1381 800 180 195 19 chr1 104407442 104407652 -92787780 + RLTR25B LTR ERVK 619 865 -163 6 1381 25 0 0 0 chr1 104407702 104407727 -92787705 + AT_rich Low_complexity Low_complexity 1 25 0 6 1381 429 226 124 29 chr1 104407850 104407863 -92787569 + RLTR25B LTR ERVK 877 889 -139 6 1381 365 54 18 0 chr1 104407863 104407919 -92787513 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1381 405 0 0 0 chr1 104407919 104407963 -92787469 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1381 429 226 124 29 chr1 104407963 104408085 -92787347 + RLTR25B LTR ERVK 890 1025 -3 6 1381 835 217 61 0 chr1 104408166 104408378 -92787054 - URR1A DNA MER1_type -1 225 1 6 1381 321 51 0 0 chr1 104408617 104408656 -92786776 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1381 774 183 0 0 chr1 104408656 104408820 -92786612 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 1381 10352 179 98 10 chr1 104408928 104412822 -92782610 - L1_Mus4 LINE L1 -390 6246 1675 6 1381 456 222 169 11 chr1 104413072 104413231 -92782201 - ORR1D1 LTR MaLR 0 374 186 6 1381 490 315 65 43 chr1 104413479 104413758 -92781674 - B4 SINE B4 -7 285 1 6 1381 688 194 222 0 chr1 104413870 104414050 -92781382 - URR1A DNA MER1_type -6 220 1 6 1381 433 318 104 15 chr1 104415101 104415302 -92780130 - ID_B1 SINE B4 -3 221 3 6 1381 1172 160 34 95 chr1 104416828 104417091 -92778341 + ORR1A2 LTR MaLR 1 247 -80 6 1381 1036 161 30 15 chr1 104417070 104417272 -92778160 - ORR1A3-int LTR MaLR -1758 205 1 6 1381 572 132 12 0 chr1 104417276 104417359 -92778073 - ORR1A3 LTR MaLR -8 318 235 6 1381 380 150 0 0 chr1 104417360 104417420 -92778012 - BGLII_B LTR ERVK -381 60 1 6 1381 40027 20 0 6 chr1 104417526 104423715 -92771717 - L1Md_A LINE L1 -1 6581 434 6 1381 407 92 0 15 chr1 104424536 104424602 -92770830 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1381 1055 109 7 0 chr1 104424630 104424777 -92770655 - B1_Mus1 SINE Alu 0 148 1 6 1381 264 336 25 17 chr1 104424778 104424896 -92770536 - L1M4 LINE L1 -574 5605 5487 6 1381 23 0 0 0 chr1 104425055 104425078 -92770354 + AT_rich Low_complexity Low_complexity 1 23 0 6 1381 341 226 21 0 chr1 104425084 104425177 -92770255 - L1M4 LINE L1 -880 5266 5172 6 1381 3763 7 0 0 chr1 104425177 104425602 -92769830 + L1Md_A LINE L1 5162 5586 -297 6 1381 8852 10 0 0 chr1 104425602 104426597 -92768835 + L1Md_A LINE L1 5587 6581 -1 6 1381 476 278 64 35 chr1 104426610 104426893 -92768539 - L1M4 LINE L1 -880 5266 4976 6 1381 381 22 0 0 chr1 104426964 104427010 -92768422 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1381 387 308 69 8 chr1 104427011 104427142 -92768290 - RSINE1 SINE B4 -14 151 13 6 1381 6725 187 12 6 chr1 104428137 104429488 -92765944 - Lx2 LINE L1 -1455 4422 3064 6 1381 7257 221 19 7 chr1 104429479 104430767 -92764665 + Lx2 LINE L1 4388 5693 -193 6 1381 2664 67 3 0 chr1 104430767 104431112 -92764320 + ORR1A0 LTR MaLR 1 346 0 6 1381 7257 175 40 15 chr1 104431112 104432380 -92763052 + Lx2 LINE L1 5691 6996 -1 6 1381 215 227 0 26 chr1 104433054 104433131 -92762301 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 1381 567 363 39 0 chr1 104433189 104433371 -92762061 - B4A SINE B4 -96 196 8 6 1381 314 266 138 0 chr1 104433650 104433744 -92761688 + B4 SINE B4 123 229 -63 6 1381 1072 158 4 44 chr1 104435482 104435707 -92759725 - Lx LINE L1 -6 6648 6433 6 1381 462 18 0 0 chr1 104435722 104435777 -92759655 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1381 355 276 165 9 chr1 104435943 104436155 -92759277 - RMER17C LTR ERVK -165 245 1 6 1381 738 0 0 0 chr1 104436544 104436626 -92758806 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 6 1381 2274 90 0 54 chr1 104436627 104436776 -92758656 + IAPEY3_LTR LTR ERVK 1 143 -189 6 1381 4708 44 0 0 chr1 104436776 104437346 -92758086 + L1Md_T LINE L1 6013 6582 0 6 1381 2274 90 0 54 chr1 104437346 104437547 -92757885 + IAPEY3_LTR LTR ERVK 144 332 0 6 1381 189 0 0 0 chr1 104437547 104437568 -92757864 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 6 1381 2151 179 7 99 chr1 104438291 104438531 -92756901 + MT2B LTR ERVL 1 156 -445 6 1381 8111 39 5 0 chr1 104438531 104439510 -92755922 + L1Md_F3 LINE L1 5587 6570 -14 6 1381 2151 252 9 38 chr1 104439510 104439953 -92755479 + MT2B LTR ERVL 157 601 0 6 1381 282 229 0 0 chr1 104440045 104440115 -92755317 + GA-rich Low_complexity Low_complexity 3 72 0 6 1381 3077 190 111 22 chr1 104440707 104441384 -92754048 + RMER19A LTR ERVK 1 737 0 6 1381 1016 259 119 113 chr1 104441807 104443002 -92752430 - RLTR22_Mur LTR ERVK -42 1766 469 6 1381 7657 40 7 17 chr1 104443048 104444497 -92750935 - L1Md_F2 LINE L1 -2 6580 5153 6 1381 930 283 41 27 chr1 104444497 104444903 -92750529 - RLTR22_Mur LTR ERVK -1407 441 1 6 1381 454 355 21 53 chr1 104445052 104445242 -92750190 + B4 SINE B4 109 292 0 6 1381 379 311 89 59 chr1 104445283 104445621 -92749811 + HAL1 LINE L1 973 1320 -1187 6 1381 181 57 57 0 chr1 104445643 104445678 -92749754 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 6 1381 233 354 0 9 chr1 104445742 104445856 -92749576 + HAL1 LINE L1 1479 1591 -916 6 1381 513 154 0 0 chr1 104446481 104446572 -92748860 + CT-rich Low_complexity Low_complexity 2 92 0 6 1381 225 182 0 0 chr1 104446588 104446643 -92748789 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1381 282 348 0 11 chr1 104446643 104446736 -92748696 - B1_Mur2 SINE Alu -55 94 3 6 1381 499 324 35 21 chr1 104446736 104446820 -92748612 - B4 SINE B4 -205 87 2 6 1381 646 292 63 71 chr1 104447518 104447772 -92747660 + B4A SINE B4 2 253 -39 6 1381 7066 87 5 2 chr1 104448866 104449849 -92745583 + L1_Mus3 LINE L1 5648 6633 -5 6 1381 363 44 0 0 chr1 104449850 104449895 -92745537 + (TTA)n Simple_repeat Simple_repeat 1 45 0 6 1381 252 303 24 39 chr1 104449897 104450024 -92745408 + Lx7 LINE L1 7139 7263 -433 6 1381 474 18 0 0 chr1 104450035 104450090 -92745342 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1381 26 30 0 0 chr1 104450254 104450287 -92745145 + AT_rich Low_complexity Low_complexity 1 33 0 6 1381 21 0 0 0 chr1 104450536 104450557 -92744875 + AT_rich Low_complexity Low_complexity 1 21 0 6 1381 430 316 145 27 chr1 104451631 104451927 -92743505 - Lx8 LINE L1 -72 7401 7071 6 1381 200 59 29 0 chr1 104451991 104452025 -92743407 + (TTTTTA)n Simple_repeat Simple_repeat 3 37 0 6 1381 685 328 66 24 chr1 104452025 104452359 -92743073 + Lx8 LINE L1 6646 6993 -480 6 1381 515 331 32 40 chr1 104452368 104452582 -92742850 - B3A SINE B2 -1 215 6 6 1381 551 327 76 67 chr1 104453081 104453425 -92742007 + ORR1E LTR MaLR 11 357 -2 6 1381 806 140 22 29 chr1 104454117 104454514 -92740918 + GA-rich Low_complexity Low_complexity 1 394 0 6 1381 498 33 0 0 chr1 104455111 104455171 -92740261 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1381 544 278 89 16 chr1 104455224 104455414 -92740018 + B3 SINE B2 13 216 0 7 1381 205 254 0 0 chr1 104455414 104455469 -92739963 + A-rich Low_complexity Low_complexity 5 59 0 7 1381 186 43 0 0 chr1 104456459 104456482 -92738950 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1381 548 132 9 0 chr1 104456522 104456628 -92738804 + (TG)n Simple_repeat Simple_repeat 2 108 0 7 1381 556 327 33 63 chr1 104456678 104456949 -92738483 - B4A SINE B4 -27 265 3 7 1381 252 77 0 0 chr1 104457298 104457337 -92738095 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1381 358 318 47 99 chr1 104457389 104457581 -92737851 + B4 SINE B4 2 183 -109 7 1381 495 290 93 64 chr1 104457725 104457830 -92737602 + MTE2a LTR MaLR 123 229 -150 7 1381 1507 132 33 74 chr1 104457830 104458166 -92737266 - RLTRETN_Mm LTR ERVK 0 322 1 7 1381 495 290 93 64 chr1 104458166 104458296 -92737136 + MTE2a LTR MaLR 230 365 -14 7 1381 282 115 0 0 chr1 104458806 104458858 -92736574 + (TTGG)n Simple_repeat Simple_repeat 4 55 0 7 1381 1092 90 0 0 chr1 104458858 104459002 -92736430 - B1_Mus1 SINE Alu -2 146 3 7 1381 251 309 31 41 chr1 104459298 104459396 -92736036 + ORR1D2 LTR MaLR 20 116 -254 7 1381 368 362 8 8 chr1 104459620 104459737 -92735695 + B4 SINE B4 9 125 -167 7 1381 540 321 14 19 chr1 104460697 104460910 -92734522 + ID_B1 SINE B4 4 215 -9 7 1381 454 350 67 55 chr1 104461464 104461718 -92733714 - B4 SINE B4 -27 265 9 7 1381 277 357 8 43 chr1 104461855 104461972 -92733460 + B4 SINE B4 35 147 -145 7 1381 293 0 27 0 chr1 104462011 104462048 -92733384 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1381 1256 276 44 6 chr1 104462512 104462877 -92732555 - MTEa LTR MaLR 0 379 1 7 1381 901 192 113 0 chr1 104463132 104463335 -92732097 + URR1A DNA MER1_type 1 226 0 7 172 660 328 10 24 chr1 104464321 104464527 -92730905 + ID_B1 SINE B4 2 204 -20 7 1382 987 80 0 0 chr1 104465247 104465385 -92730047 + (TG)n Simple_repeat Simple_repeat 1 138 0 7 1382 225 268 83 14 chr1 104465401 104465473 -92729959 - B4A SINE B4 -30 262 186 7 1382 3029 251 31 27 chr1 104465481 104466250 -92729182 + RLTR25A LTR ERVK 5 776 -327 7 1382 433 340 47 14 chr1 104466250 104466465 -92728967 + L1VL4 LINE L1 221 442 -5860 7 1382 1734 143 9 3 chr1 104466476 104466827 -92728605 - L1VL4 LINE L1 -2532 1027 675 7 1382 877 352 35 38 chr1 104466864 104467530 -92727902 + Lx9 LINE L1 6772 7435 -209 7 1382 315 0 0 0 chr1 104468057 104468092 -92727340 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1382 404 390 0 101 chr1 104468807 104469055 -92726377 - B4A SINE B4 -27 265 43 7 1382 357 24 0 0 chr1 104469326 104469368 -92726064 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1382 200 222 21 43 chr1 104469492 104469586 -92725846 + (TATG)n Simple_repeat Simple_repeat 4 95 0 7 1382 558 0 0 0 chr1 104469586 104469648 -92725784 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1382 1424 206 25 15 chr1 104469695 104470021 -92725411 + ORR1A4 LTR MaLR 1 329 0 7 1382 22 0 0 0 chr1 104470564 104470586 -92724846 + AT_rich Low_complexity Low_complexity 1 22 0 7 1382 366 341 16 8 chr1 104470787 104470914 -92724518 + RSINE1 SINE B4 26 153 -12 7 1382 212 179 0 0 chr1 104470916 104470955 -92724477 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 1382 364 377 29 0 chr1 104470983 104471121 -92724311 + B4 SINE B4 11 152 -140 7 1382 4932 54 14 83 chr1 104471188 104471919 -92723513 + L1Md_F2 LINE L1 5903 6582 0 7 1382 4389 85 8 42 chr1 104471916 104472565 -92722867 + L1_Mus2 LINE L1 5940 6566 0 7 1382 540 0 0 0 chr1 104472583 104472643 -92722789 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1382 951 129 0 0 chr1 104472872 104473011 -92722421 + B1_Mus1 SINE Alu 1 139 -9 7 1382 360 0 0 0 chr1 104473011 104473051 -92722381 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1382 207 0 0 0 chr1 104473051 104473074 -92722358 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 7 1382 562 135 19 0 chr1 104473544 104473648 -92721784 + CT-rich Low_complexity Low_complexity 3 108 0 7 1382 2380 98 3 9 chr1 104474037 104474387 -92721045 - L1Md_F2 LINE L1 -3 6579 6232 7 1382 510 312 55 74 chr1 104475004 104475085 -92720347 + RMER15 LTR ERVL 277 356 -219 7 1382 243 79 0 0 chr1 104475085 104475123 -92720309 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1382 994 90 15 7 chr1 104475126 104475261 -92720171 - B1_Mus2 SINE Alu -10 137 2 7 1382 510 312 55 74 chr1 104475261 104475431 -92720001 + RMER15 LTR ERVL 357 527 -48 7 1382 342 320 159 20 chr1 104475847 104476048 -92719384 - Lx8 LINE L1 -211 7262 7034 7 1382 588 299 24 0 chr1 104476302 104476469 -92718963 + Lx5 LINE L1 6152 6349 -701 7 1382 445 351 106 12 chr1 104476564 104476818 -92718614 + Lx5 LINE L1 6555 6832 -218 7 1382 22 56 0 0 chr1 104477009 104477045 -92718387 + AT_rich Low_complexity Low_complexity 1 36 0 7 1382 225 0 0 0 chr1 104477095 104477120 -92718312 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1382 248 336 27 36 chr1 104477320 104477431 -92718001 - B4 SINE B4 -169 123 14 7 1382 262 351 66 20 chr1 104477669 104477820 -92717612 - MER63A DNA AcHobo -46 164 7 7 1382 320 326 27 74 chr1 104477763 104477912 -92717520 + B4A SINE B4 5 146 -146 7 1382 504 32 0 0 chr1 104478084 104478146 -92717286 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1382 192 77 0 0 chr1 104478645 104478671 -92716761 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1382 21 0 0 0 chr1 104478938 104478959 -92716473 + AT_rich Low_complexity Low_complexity 1 21 0 7 1382 514 325 78 45 chr1 104479493 104479738 -92715694 + B4 SINE B4 40 292 0 7 1382 234 0 0 0 chr1 104479752 104479778 -92715654 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1382 189 182 0 0 chr1 104479851 104479906 -92715526 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1382 2312 268 60 27 chr1 104480422 104481154 -92714278 - Lx6 LINE L1 -12 7448 6693 7 1382 1250 226 26 62 chr1 104481271 104481636 -92713796 - ORR1A2 LTR MaLR -8 338 1 7 1382 4829 188 43 28 chr1 104481636 104481726 -92713706 - ORR1A2-int LTR MaLR 0 1963 1883 7 1382 192 40 0 0 chr1 104481726 104481751 -92713681 + (CCA)n Simple_repeat Simple_repeat 1 25 0 7 1382 4829 188 43 28 chr1 104481751 104482643 -92712789 - ORR1A2-int LTR MaLR -81 1882 966 7 1382 208 143 0 0 chr1 104482657 104482692 -92712740 + (TTTTTA)n Simple_repeat Simple_repeat 6 40 0 7 1382 438 81 0 0 chr1 104482763 104482825 -92712607 - L1_Mus2 LINE L1 -3 6563 6502 7 1382 3532 220 86 10 chr1 104482827 104483622 -92711810 - Lx2A1 LINE L1 -5 7003 6149 7 1382 776 257 43 4 chr1 104483664 104483779 -92711653 - ORR1A2-int LTR MaLR -982 981 868 7 1382 663 13 0 0 chr1 104483779 104483855 -92711577 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 7 1382 776 257 43 4 chr1 104483855 104483993 -92711439 - ORR1A2-int LTR MaLR -1096 867 719 7 1382 519 273 51 113 chr1 104483912 104483997 -92711435 - RLTR25A LTR ERVK -433 670 540 7 1382 566 223 0 0 chr1 104483997 104484100 -92711332 - MT2B LTR ERVL -342 259 157 7 1382 519 273 51 113 chr1 104484100 104484168 -92711264 - RLTR25A LTR ERVK -433 539 431 7 1382 3889 147 51 17 chr1 104484174 104484866 -92710566 - Lx LINE L1 -1 6653 5939 7 1382 288 95 0 0 chr1 104484869 104484911 -92710521 - Lx LINE L1 -271 6383 6342 7 1382 830 234 5 40 chr1 104484914 104485114 -92710318 + ORR1A3-int LTR MaLR 300 492 -1471 7 1382 321 100 10 19 chr1 104485114 104485173 -92710259 + Lx2B LINE L1 6640 6691 -309 7 1382 1070 244 33 18 chr1 104485423 104485757 -92709675 - L1_Mur3 LINE L1 -1260 4620 4282 7 1382 7021 98 6 15 chr1 104485770 104487473 -92707959 - L1_Mus1 LINE L1 -1 6566 4886 7 1382 946 250 81 31 chr1 104487474 104487833 -92707599 - L1_Mur3 LINE L1 -1583 4297 3921 7 1382 2807 234 65 47 chr1 104487806 104488482 -92706950 + L1Md_F LINE L1 387 1087 -5529 7 1382 912 82 90 0 chr1 104488482 104488616 -92706816 + B1_Mm SINE Alu 2 147 0 7 1382 2807 242 53 50 chr1 104488616 104488814 -92706618 + L1Md_F LINE L1 1086 1276 -5810 7 1382 6900 149 6 70 chr1 104488814 104490217 -92705215 + L1Md_F LINE L1 2213 3525 -2358 7 1382 883 179 0 0 chr1 104490321 104490461 -92704971 + B1_Mus1 SINE Alu 1 140 -8 7 1382 1293 96 0 0 chr1 104490474 104490808 -92704624 + (GA)n Simple_repeat Simple_repeat 1 334 0 7 1382 25 0 0 0 chr1 104490969 104490994 -92704438 + AT_rich Low_complexity Low_complexity 1 25 0 7 1382 29 28 0 0 chr1 104491714 104491750 -92703682 + AT_rich Low_complexity Low_complexity 1 36 0 7 1382 27569 33 5 1 chr1 104491751 104495767 -92699665 - L1Md_T LINE L1 0 6582 2557 7 1382 30734 6 0 0 chr1 104495810 104500000 -92695432 - L1Md_A LINE L1 0 6582 2393 7 1382 11675 6 0 0 chr1 104500000 104502385 -92693047 - L1Md_A LINE L1 -3491 2392 8 1 1382 8095 71 6 3 chr1 104502381 104504230 -92691202 - L1Md_Gf LINE L1 -3883 2003 51 2 1382 22 70 0 0 chr1 104504722 104504765 -92690667 + AT_rich Low_complexity Low_complexity 1 43 0 3 1382 405 0 0 0 chr1 104505448 104505493 -92689939 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1382 303 269 65 32 chr1 104505650 104505773 -92689659 - MTEb LTR MaLR -12 367 241 5 1382 432 0 0 0 chr1 104505806 104505854 -92689578 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1382 628 317 60 43 chr1 104505869 104506103 -92689329 - B4A SINE B4 -27 265 28 7 1382 600 73 0 0 chr1 104506390 104506472 -92688960 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 8 1382 228 135 0 0 chr1 104506564 104506601 -92688831 - MT2A LTR ERVL -3 530 494 9 1382 249 57 0 0 chr1 104506832 104506867 -92688565 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1382 180 0 0 0 chr1 104507121 104507141 -92688291 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1382 24 32 0 0 chr1 104507812 104507843 -92687589 + AT_rich Low_complexity Low_complexity 1 31 0 1 1382 2371 253 52 66 chr1 104508436 104508808 -92686624 - RLTR40 LTR ERVK 0 817 430 1 1382 2930 54 0 0 chr1 104508808 104509162 -92686270 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1382 2371 253 52 66 chr1 104509162 104509423 -92686009 - RLTR40 LTR ERVK -388 429 200 1 1382 5629 156 47 6 chr1 104509423 104510442 -92684990 - Lx3A LINE L1 -8 6973 5913 1 1382 2371 253 52 66 chr1 104510442 104510636 -92684796 - RLTR40 LTR ERVK -618 199 1 1 1382 583 338 24 38 chr1 104510673 104510882 -92684550 - B4A SINE B4 -86 206 1 1 1382 885 67 8 0 chr1 104511341 104511460 -92683972 - B1_Mm SINE Alu -2 145 26 1 1382 253 389 17 17 chr1 104512267 104512382 -92683050 + RSINE1 SINE B4 50 164 -1 1 1382 189 107 0 0 chr1 104512460 104512488 -92682944 + (GGA)n Simple_repeat Simple_repeat 3 30 0 1 1382 24 53 0 0 chr1 104512549 104512587 -92682845 + AT_rich Low_complexity Low_complexity 1 38 0 2 1382 373 150 127 27 chr1 104513443 104513540 -92681892 + B1_Mur2 SINE Alu 12 147 -2 2 1382 972 317 82 21 chr1 104515340 104515717 -92679715 + MTD LTR MaLR 5 404 -15 2 1382 24 0 0 0 chr1 104515845 104515869 -92679563 + AT_rich Low_complexity Low_complexity 1 24 0 2 1382 440 286 0 0 chr1 104516207 104516298 -92679134 - B3A SINE B2 -76 122 32 2 1382 1227 297 46 0 chr1 104516943 104517290 -92678142 + MTD LTR MaLR 57 419 0 2 1382 21 57 0 0 chr1 104517452 104517487 -92677945 + AT_rich Low_complexity Low_complexity 1 35 0 2 1382 2049 240 59 37 chr1 104517553 104517695 -92677737 + RLTR20B2 LTR ERVK 1 136 -424 2 1382 858 112 146 18 chr1 104517695 104517859 -92677573 + B2_Mm1t SINE B2 1 185 -8 2 1382 2049 240 59 37 chr1 104517859 104518256 -92677176 + RLTR20B2 LTR ERVK 137 552 -8 2 1382 546 43 0 0 chr1 104518953 104519022 -92676410 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1382 3129 186 68 19 chr1 104519372 104520082 -92675350 + MYSERV16_I-int LTR ERVK 2 1386 -1456 3 1382 1649 140 80 3 chr1 104520082 104520384 -92675048 - ORR1A2 LTR MaLR 0 327 3 3 1382 7863 180 68 17 chr1 104520387 104522065 -92673367 - ORR1A2-int LTR MaLR -1 1962 1 3 1382 2085 101 69 0 chr1 104522065 104522371 -92673061 - ORR1A2 LTR MaLR 0 327 1 3 1382 1202 240 101 19 chr1 104522371 104522749 -92672683 + MYSERV16_I-int LTR ERVK 720 1128 -1198 3 1382 1531 187 24 21 chr1 104522749 104523038 -92672394 - RLTR19 LTR ERVK -207 292 3 3 1382 536 254 119 58 chr1 104523080 104523416 -92672016 + MT2A LTR ERVL 1 293 -240 3 1382 941 212 64 5 chr1 104523422 104523640 -92671792 - RLTR22_Mur LTR ERVK -28 1820 1590 3 1382 2006 181 12 88 chr1 104523826 104524100 -92671332 - RLTR22_Mur LTR ERVK -1308 540 279 3 1382 1059 109 0 0 chr1 104524100 104524247 -92671185 + B1_Mm SINE Alu 1 147 0 3 1382 2006 181 12 88 chr1 104524247 104524458 -92670974 - RLTR22_Mur LTR ERVK -1570 278 92 3 1382 1727 122 7 31 chr1 104524629 104524917 -92670515 - LSU-rRNA_Hsa rRNA rRNA -230 4805 4525 3 1382 275 103 0 0 chr1 104524919 104524958 -92670474 + U5 snRNA snRNA 1 39 -77 3 1382 21 0 0 0 chr1 104525067 104525088 -92670344 + AT_rich Low_complexity Low_complexity 1 21 0 3 1382 7641 49 7 6 chr1 104525088 104526291 -92669141 - L1Md_F2 LINE L1 -15 6567 5362 3 1382 9778 52 11 33 chr1 104526288 104526720 -92668712 - L1_Mm LINE L1 -83 5800 5377 4 1382 4452 10 0 0 chr1 104526720 104527219 -92668213 + L1Md_T LINE L1 6084 6582 0 4 1382 9778 52 11 33 chr1 104527219 104528100 -92667332 - L1_Mm LINE L1 -507 5376 4516 4 1382 23 54 0 0 chr1 104528156 104528193 -92667239 + AT_rich Low_complexity Low_complexity 1 37 0 4 1382 991 106 21 0 chr1 104528193 104528335 -92667097 - B1_Mm SINE Alu 0 147 3 4 1382 21 71 0 0 chr1 104528472 104528514 -92666918 + AT_rich Low_complexity Low_complexity 1 42 0 4 1382 186 43 0 0 chr1 104528810 104528833 -92666599 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1382 433 63 0 0 chr1 104529045 104529108 -92666324 + L1_Mus2 LINE L1 6503 6565 -1 4 1382 350 279 0 0 chr1 104529111 104529222 -92666210 + A-rich Low_complexity Low_complexity 1 111 0 4 1382 273 281 12 0 chr1 104529249 104529331 -92666101 + L1_Mur3 LINE L1 4925 5007 -873 4 1382 5542 170 41 111 chr1 104529403 104530441 -92664991 + L1_Mur2 LINE L1 2549 3482 -2395 4 1382 582 15 0 0 chr1 104530441 104530508 -92664924 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 5 1382 5542 170 41 111 chr1 104530508 104531070 -92664362 + L1_Mur2 LINE L1 3483 4037 -1840 4 1382 1366 209 152 5 chr1 104531042 104531417 -92664015 + L1_Mur2 LINE L1 4621 5050 -827 4 1382 402 386 8 0 chr1 104531828 104531955 -92663477 + B3A SINE B2 38 165 -33 5 1382 1623 27 0 0 chr1 104531961 104532147 -92663285 - B2_Mm1t SINE B2 -7 186 1 5 1382 21 57 0 0 chr1 104532192 104532227 -92663205 + AT_rich Low_complexity Low_complexity 1 35 0 5 1382 24 0 0 0 chr1 104532274 104532298 -92663134 + AT_rich Low_complexity Low_complexity 1 24 0 5 1382 491 281 123 0 chr1 104532847 104532993 -92662439 + URR1A DNA MER1_type 1 164 -62 5 1382 298 74 37 0 chr1 104533489 104533543 -92661889 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1382 346 347 45 62 chr1 104533667 104533956 -92661476 - B4A SINE B4 0 292 9 5 1382 3757 100 0 11 chr1 104534123 104534657 -92660775 - L1_Mus2 LINE L1 0 6566 6039 5 1382 475 317 97 0 chr1 104534664 104534850 -92660582 - B3 SINE B2 0 216 13 5 1382 23 0 0 0 chr1 104535254 104535277 -92660155 + AT_rich Low_complexity Low_complexity 1 23 0 6 1382 1559 230 47 0 chr1 104535402 104535745 -92659687 - ORR1B2 LTR MaLR -8 359 1 6 1382 277 364 18 6 chr1 104536172 104536338 -92659094 - L1M5 LINE L1 -623 5550 5383 6 1382 380 312 20 20 chr1 104536645 104536792 -92658640 - Lx8 LINE L1 -139 7334 7188 6 1382 24 0 0 0 chr1 104536924 104536948 -92658484 + AT_rich Low_complexity Low_complexity 1 24 0 6 1382 799 305 57 15 chr1 104537193 104537596 -92657836 + MTC LTR MaLR 2 421 0 6 1382 197 65 32 0 chr1 104538148 104538179 -92657253 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 6 1382 517 384 68 4 chr1 104538478 104538729 -92656703 - B4A SINE B4 -5 287 21 6 1382 3227 3 0 0 chr1 104538794 104539153 -92656279 - L1Md_A LINE L1 -1041 4842 4484 6 1382 6575 3 0 0 chr1 104539151 104539884 -92655548 + L1Md_A LINE L1 4854 5586 -297 6 1382 8915 5 1 0 chr1 104539884 104540879 -92654553 + L1Md_A LINE L1 5587 6582 0 6 1382 29 28 0 0 chr1 104541550 104541586 -92653846 + AT_rich Low_complexity Low_complexity 1 36 0 6 1382 270 56 0 0 chr1 104541832 104541868 -92653564 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1382 21 0 0 0 chr1 104542105 104542126 -92653306 + AT_rich Low_complexity Low_complexity 1 21 0 7 1382 2424 73 55 0 chr1 104542312 104542640 -92652792 + ORR1A1 LTR MaLR 1 346 0 7 1382 489 138 0 0 chr1 104542640 104542734 -92652698 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 1382 944 315 93 16 chr1 104542999 104543376 -92652056 + MTD LTR MaLR 1 406 -13 7 1382 2401 146 106 35 chr1 104543497 104543943 -92651489 + RMER17A2 LTR ERVK 1 445 -461 7 1382 740 85 8 0 chr1 104543943 104544061 -92651371 + (TC)n Simple_repeat Simple_repeat 2 120 0 7 1382 2401 146 106 35 chr1 104544061 104544104 -92651328 + RMER17A2 LTR ERVK 446 524 -382 7 1382 356 316 45 32 chr1 104544104 104544261 -92651171 + Lx4B LINE L1 6883 7041 -17 7 1382 26 0 0 0 chr1 104544265 104544291 -92651141 + AT_rich Low_complexity Low_complexity 1 26 0 7 1382 234 0 0 0 chr1 104544434 104544460 -92650972 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 7 1382 1404 290 8 11 chr1 104544664 104545117 -92650315 - Lx8 LINE L1 -859 6614 6166 8 1382 842 313 48 11 chr1 104545359 104545711 -92649721 - Lx8 LINE L1 -14 5866 5502 8 1382 252 0 0 0 chr1 104545814 104545842 -92649590 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1382 1647 314 66 38 chr1 104545872 104546999 -92648433 + L1_Mur3 LINE L1 4286 5443 -437 8 1382 631 237 41 45 chr1 104547184 104547427 -92648005 + MTC-int LTR MaLR 1017 1258 0 8 1382 1370 230 34 145 chr1 104548008 104548506 -92646926 - RLTR40 LTR ERVK 0 817 375 8 1382 433 136 0 43 chr1 104548506 104548598 -92646834 - L1Md_F2 LINE L1 -2 6580 6493 8 1382 1212 245 103 9 chr1 104548750 104549100 -92646332 - RLTR40 LTR ERVK -434 383 1 8 1382 384 350 27 49 chr1 104549151 104549334 -92646098 + B4 SINE B4 108 286 -6 8 1382 288 120 0 0 chr1 104549385 104549435 -92645997 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1382 562 54 43 0 chr1 104549435 104549528 -92645904 + (CAGAGA)n Simple_repeat Simple_repeat 6 102 0 8 1382 413 298 81 45 chr1 104549533 104549951 -92645481 + L1MA6 LINE L1 5822 6255 -45 8 1382 25 65 0 0 chr1 104550001 104550047 -92645385 + AT_rich Low_complexity Low_complexity 1 46 0 9 1382 301 336 21 69 chr1 104550977 104551121 -92644311 + B4 SINE B4 117 253 -39 9 1382 396 0 0 0 chr1 104551198 104551242 -92644190 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1382 270 0 0 0 chr1 104551385 104551415 -92644017 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1382 180 97 0 0 chr1 104551416 104551447 -92643985 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 9 1382 374 38 0 0 chr1 104551496 104551549 -92643883 + L1_Mus1 LINE L1 6515 6567 0 9 1382 317 399 14 0 chr1 104552282 104552420 -92643012 + B4A SINE B4 3 142 -150 9 1382 399 21 0 0 chr1 104552543 104552591 -92642841 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1382 487 291 32 54 chr1 104552805 104552990 -92642442 + B3A SINE B2 18 198 0 9 1382 1080 250 80 7 chr1 104553822 104554096 -92641336 + MTC LTR MaLR 128 421 0 9 1382 447 260 69 51 chr1 104554389 104554744 -92640688 - Lx7 LINE L1 -1470 6226 5794 1 1382 984 213 76 19 chr1 104554746 104555009 -92640423 + Lx7 LINE L1 5517 5794 -86 1 1382 3483 179 5 3 chr1 104556167 104556789 -92638643 + Lx3B LINE L1 6347 6969 -4 1 1382 333 118 0 0 chr1 104556797 104556848 -92638584 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1 1382 382 49 33 0 chr1 104557239 104557300 -92638132 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1382 226 323 46 0 chr1 104557399 104557464 -92637968 + RSINE1 SINE B4 55 122 -43 1 1382 209 191 0 0 chr1 104557506 104557548 -92637884 + A-rich Low_complexity Low_complexity 5 46 0 1 1382 339 353 61 20 chr1 104557885 104558131 -92637301 + L1M5 LINE L1 5255 5510 -730 1 1382 362 396 52 22 chr1 104558348 104558578 -92636854 - B4A SINE B4 -55 237 1 1 1382 746 251 164 57 chr1 104560297 104560614 -92634818 - MT2A LTR ERVL 0 533 183 1 1382 689 164 47 0 chr1 104560614 104560742 -92634690 + RMER17B LTR ERVK 821 954 -4 1 1382 402 350 21 0 chr1 104560742 104560885 -92634547 - RSINE1 SINE B4 -18 147 2 1 1382 3430 151 102 12 chr1 104561057 104561703 -92633729 - RMER17B LTR ERVK -254 704 1 1 1382 531 78 0 0 chr1 104561918 104561995 -92633437 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1382 2456 140 9 18 chr1 104564322 104564759 -92630673 - L1_Mus3 LINE L1 -447 5436 5004 1 1382 6602 102 68 1 chr1 104564762 104565889 -92629543 + L1_Mus3 LINE L1 5431 6632 -6 1 1382 21 36 0 0 chr1 104566142 104566170 -92629262 + AT_rich Low_complexity Low_complexity 1 28 0 1 1382 291 28 0 0 chr1 104566185 104566221 -92629211 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1382 268 355 31 47 chr1 104566265 104566392 -92629040 - B3 SINE B2 -66 150 26 1 1382 805 140 0 13 chr1 104566551 104566703 -92628729 + CT-rich Low_complexity Low_complexity 1 150 0 1 1382 360 174 0 23 chr1 104566799 104566887 -92628545 - Lx9 LINE L1 -4 7640 7555 1 1382 22 35 0 0 chr1 104566959 104566988 -92628444 + AT_rich Low_complexity Low_complexity 1 29 0 1 1382 21 0 0 0 chr1 104567026 104567047 -92628385 + AT_rich Low_complexity Low_complexity 1 21 0 1 1382 207 100 0 0 chr1 104567047 104567077 -92628355 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1382 3195 41 0 3 chr1 104567083 104567472 -92627960 - L1Md_F2 LINE L1 -17 6565 6178 1 1382 302 316 81 56 chr1 104567918 104568079 -92627353 + B2_Mm2 SINE B2 6 170 -25 1 1382 402 75 38 0 chr1 104568806 104568886 -92626546 + (TTTTG)n Simple_repeat Simple_repeat 2 84 0 1 1382 246 277 76 15 chr1 104569024 104569090 -92626342 + RSINE1 SINE B4 2 71 -94 1 1382 204 146 24 0 chr1 104569103 104569144 -92626288 + A-rich Low_complexity Low_complexity 3 44 0 1 1382 24 32 0 0 chr1 104569201 104569232 -92626200 + AT_rich Low_complexity Low_complexity 1 31 0 1 1382 649 83 0 27 chr1 104569324 104569436 -92625996 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 1 1382 189 0 0 0 chr1 104569533 104569554 -92625878 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1382 182 109 71 18 chr1 104570985 104571041 -92624391 + A-rich Low_complexity Low_complexity 3 61 0 1 1382 200 163 23 0 chr1 104571395 104571438 -92623994 + GA-rich Low_complexity Low_complexity 1 44 0 1 1382 498 354 104 26 chr1 104571474 104571744 -92623688 - B4A SINE B4 0 292 2 1 1382 404 312 119 10 chr1 104572316 104572510 -92622922 - B3 SINE B2 0 216 2 1 1382 734 105 0 9 chr1 104572510 104572625 -92622807 + (TCTCCC)n Simple_repeat Simple_repeat 5 118 0 1 1382 342 45 0 0 chr1 104572626 104572670 -92622762 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1382 5309 154 58 26 chr1 104572937 104573970 -92621462 + Lx3_Mus LINE L1 5944 7009 0 1 1382 1117 230 62 18 chr1 104573973 104574276 -92621156 - RMER12 LTR ERVK -1546 302 3 1 1382 366 91 0 0 chr1 104574704 104574759 -92620673 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1382 26 0 0 0 chr1 104575038 104575064 -92620368 + AT_rich Low_complexity Low_complexity 1 26 0 1 1382 21 57 0 0 chr1 104575867 104575902 -92619530 + AT_rich Low_complexity Low_complexity 1 35 0 1 1382 7642 129 44 22 chr1 104576070 104577146 -92618286 - Lx3_Mus LINE L1 -8 7001 5919 1 1382 279 0 0 0 chr1 104577146 104577177 -92618255 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1382 21938 108 98 57 chr1 104577177 104578356 -92617076 - Lx3_Mus LINE L1 -1091 5918 4737 1 1382 243 0 0 0 chr1 104578356 104578383 -92617049 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1382 21938 107 100 58 chr1 104578383 104580014 -92615418 - Lx3_Mus LINE L1 -1150 4736 3026 1 1382 2716 107 24 0 chr1 104580014 104580425 -92615007 + BGLII LTR ERVK 1 421 0 1 1382 21938 107 100 58 chr1 104580425 104580558 -92614874 - Lx3_Mus LINE L1 -2861 3025 2876 1 1382 270 0 0 0 chr1 104580558 104580588 -92614844 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1 1382 21938 107 100 58 chr1 104580588 104581795 -92613637 - Lx3_Mus LINE L1 -3011 2875 1562 1 1382 8290 174 18 3 chr1 104581795 104582611 -92612821 + Lx2 LINE L1 4313 5131 -752 1 1382 864 127 7 7 chr1 104582611 104582746 -92612686 + B1_Mm SINE Alu 2 136 -11 1 1382 378 57 0 0 chr1 104582748 104582801 -92612631 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 1 1382 8290 183 22 8 chr1 104582801 104584630 -92610802 + Lx2 LINE L1 5132 6996 -1 1 1382 507 56 0 0 chr1 104585421 104585492 -92609940 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1382 378 362 56 6 chr1 104586093 104586271 -92609161 + B3A SINE B2 6 192 -6 1 1382 30 77 0 0 chr1 104586847 104586912 -92608520 + AT_rich Low_complexity Low_complexity 1 65 0 1 1382 183 80 0 0 chr1 104587038 104587063 -92608369 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1382 1114 104 11 6 chr1 104587150 104587324 -92608108 + MTA_Mm LTR MaLR 1 175 -221 1 1382 1454 39 0 0 chr1 104587574 104587755 -92607677 - L1Md_A LINE L1 0 6582 6402 1 1382 3142 25 0 0 chr1 104587755 104588116 -92607316 + L1Md_T LINE L1 6044 6404 -178 1 1382 1647 61 39 0 chr1 104588116 104588346 -92607086 + MTA_Mm LTR MaLR 158 396 0 1 1382 334 351 26 26 chr1 104588348 104588500 -92606932 + RSINE1 SINE B4 4 155 -10 1 1382 323 287 101 28 chr1 104588625 104588804 -92606628 + L1M4 LINE L1 4359 4550 -1596 1 1382 26 64 0 0 chr1 104588889 104588936 -92606496 + AT_rich Low_complexity Low_complexity 1 47 0 1 1382 603 327 47 29 chr1 104589411 104589688 -92605744 + Lx8 LINE L1 7000 7281 -192 1 1382 323 175 0 5 chr1 104589936 104590001 -92605431 - B2_Mm2 SINE B2 -107 109 47 1 1382 1031 158 6 12 chr1 104590028 104590201 -92605231 - B2_Mm2 SINE B2 -23 172 1 1 1382 3401 97 92 9 chr1 104590437 104590980 -92604452 + L1_Mur1 LINE L1 4688 5275 -611 1 1382 237 264 54 11 chr1 104591584 104591676 -92603756 + L1_Rod LINE L1 5532 5627 -220 1 1382 23 0 0 0 chr1 104592233 104592256 -92603176 + AT_rich Low_complexity Low_complexity 1 23 0 1 1382 207 0 0 0 chr1 104592283 104592306 -92603126 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1382 214 303 212 0 chr1 104592360 104592459 -92602973 + B4A SINE B4 8 127 -165 1 1382 23 78 0 0 chr1 104592825 104592876 -92602556 + AT_rich Low_complexity Low_complexity 1 51 0 1 1382 596 314 48 36 chr1 104592877 104593128 -92602304 + MTE2b LTR MaLR 23 276 -103 1 1382 206 174 57 23 chr1 104593174 104593262 -92602170 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1 1382 240 70 23 23 chr1 104593657 104593701 -92601731 + B3 SINE B2 166 209 -7 1 1382 513 317 0 0 chr1 104594060 104594183 -92601249 + RSINE1 SINE B4 5 127 -38 1 1382 535 346 98 29 chr1 104594811 104595136 -92600296 + MTEb LTR MaLR 3 364 -15 1 1383 390 91 0 0 chr1 104595497 104595552 -92599880 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1383 740 132 41 7 chr1 104595559 104595704 -92599728 - RMER17B LTR ERVK -494 464 315 1 1383 25 31 0 0 chr1 104596275 104596307 -92599125 + AT_rich Low_complexity Low_complexity 1 32 0 1 1383 942 102 0 0 chr1 104596310 104596477 -92598955 + (TG)n Simple_repeat Simple_repeat 2 168 0 1 1383 593 342 45 0 chr1 104596477 104596676 -92598756 - ID_B1 SINE B4 -9 215 8 1 1383 387 361 27 82 chr1 104597073 104597366 -92598066 + MT2A LTR ERVL 136 412 -121 1 1383 219 146 0 0 chr1 104597773 104597814 -92597618 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1383 338 236 53 29 chr1 104597814 104597924 -92597508 - RMER20B LTR ERVK -406 110 3 1 1383 513 0 0 0 chr1 104597929 104597986 -92597446 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1383 1061 97 0 7 chr1 104597986 104598131 -92597301 - B1_Mm SINE Alu -2 145 2 1 1383 292 346 145 8 chr1 104598169 104598300 -92597132 + RSINE1 SINE B4 5 153 -12 1 1383 29 0 0 0 chr1 104598304 104598333 -92597099 + AT_rich Low_complexity Low_complexity 1 29 0 1 1383 519 17 0 0 chr1 104598981 104599041 -92596391 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1383 276 30 0 0 chr1 104599041 104599073 -92596359 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1383 420 384 0 0 chr1 104599225 104599431 -92596001 + B3 SINE B2 1 206 -10 1 1383 597 354 14 42 chr1 104599600 104599883 -92595549 - B4A SINE B4 0 292 18 1 1383 948 161 0 0 chr1 104599906 104600131 -92595301 + (CA)n Simple_repeat Simple_repeat 1 225 0 1 1383 281 219 0 15 chr1 104600131 104600196 -92595236 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1383 847 327 57 37 chr1 104601111 104601460 -92593972 + ORR1E LTR MaLR 1 356 -3 1 1383 275 326 0 0 chr1 104601506 104601598 -92593834 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1383 30 27 0 0 chr1 104601639 104601676 -92593756 + AT_rich Low_complexity Low_complexity 1 37 0 1 1383 1212 97 0 11 chr1 104601838 104602016 -92593416 + B2_Mm2 SINE B2 15 190 -5 1 1383 5840 55 1 1 chr1 104602424 104603156 -92592276 - L1Md_F2 LINE L1 -16 6566 5835 1 1383 253 345 54 76 chr1 104603545 104603730 -92591702 - B3A SINE B2 -16 182 2 1 1383 282 156 0 0 chr1 104604229 104604293 -92591139 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1383 330 146 12 24 chr1 104604369 104604453 -92590979 + CT-rich Low_complexity Low_complexity 2 84 0 1 1383 6870 75 7 0 chr1 104604842 104605729 -92589703 + RLTR13B1 LTR ERVK 1 893 0 1 1383 216 0 0 0 chr1 104605941 104605965 -92589467 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1383 237 309 0 118 chr1 104606346 104606456 -92588976 - PB1D10 SINE Alu 0 117 21 2 1383 319 328 203 29 chr1 104606369 104606507 -92588925 - ID_B1 SINE B4 -40 184 23 2 1383 220 336 54 147 chr1 104607451 104607580 -92587852 + B4A SINE B4 33 149 -143 2 1383 375 339 0 0 chr1 104608078 104608187 -92587245 + B4A SINE B4 8 116 -176 2 1383 344 358 8 8 chr1 104608198 104608319 -92587113 + B4 SINE B4 168 288 -4 2 1383 1449 233 13 9 chr1 104608973 104609536 -92585896 + L1_Mur2 LINE L1 943 1509 -4368 2 1383 2690 207 51 47 chr1 104609608 104610241 -92585191 + RLTR19B LTR ERVK 74 708 -7 2 1383 476 228 36 115 chr1 104610246 104610385 -92585047 + RLTR19-int LTR ERVK 2 129 -6008 2 1383 1819 189 14 35 chr1 104610656 104611023 -92584409 + RLTR19-int LTR ERVK 289 647 -5490 2 1383 21 0 0 0 chr1 104611023 104611044 -92584388 + AT_rich Low_complexity Low_complexity 1 21 0 2 1383 8311 33 2 2 chr1 104611044 104612228 -92583204 - L1Md_F2 LINE L1 -16 6566 5383 2 1383 928 200 5 74 chr1 104612232 104612448 -92582984 + RLTR19-int LTR ERVK 638 838 -5299 2 1383 2931 271 37 72 chr1 104612453 104613383 -92582049 - RMER13B LTR ERVK -7 901 5 2 1383 1355 176 66 3 chr1 104613391 104613693 -92581739 + RLTR19-int LTR ERVK 830 1150 -4987 2 1383 2748 147 23 38 chr1 104613724 104614334 -92581098 + RLTR19-int LTR ERVK 1257 1857 -4280 2 1383 2226 185 53 22 chr1 104614388 104615242 -92580190 + L1_Mur1 LINE L1 208 1441 -4445 2 1383 22650 133 16 7 chr1 104615239 104616780 -92578652 - L1VL4 LINE L1 -830 5053 3485 2 1383 236 53 26 0 chr1 104616780 104616818 -92578614 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1383 22650 133 16 7 chr1 104616818 104618011 -92577421 - L1VL4 LINE L1 -2399 3484 2288 2 1383 233 0 62 0 chr1 104618011 104618043 -92577389 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1383 22650 152 12 8 chr1 104618043 104619660 -92575772 - L1VL4 LINE L1 -3596 2287 668 2 1383 679 99 10 10 chr1 104619697 104619799 -92575633 + L1Md_F3 LINE L1 5485 5586 -297 2 1383 8361 33 2 2 chr1 104619799 104620797 -92574635 + L1Md_F3 LINE L1 5587 6584 0 2 1383 216 0 0 0 chr1 104620822 104620846 -92574586 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1383 1988 138 25 6 chr1 104620876 104621197 -92574235 + ORR1A2 LTR MaLR 1 327 0 2 1383 331 288 127 32 chr1 104621250 104621408 -92574024 + B3A SINE B2 25 197 -1 2 1383 23 33 0 0 chr1 104621464 104621494 -92573938 + AT_rich Low_complexity Low_complexity 1 30 0 2 1383 180 0 0 0 chr1 104621833 104621853 -92573579 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1383 258 253 204 31 chr1 104621896 104621994 -92573438 - PB1D10 SINE Alu 0 117 3 2 1383 21 36 0 0 chr1 104622420 104622448 -92572984 + AT_rich Low_complexity Low_complexity 1 28 0 2 1383 23 33 0 0 chr1 104622639 104622669 -92572763 + AT_rich Low_complexity Low_complexity 1 30 0 2 1383 233 214 18 0 chr1 104622778 104622834 -92572598 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1383 643 319 72 10 chr1 104622961 104623170 -92572262 - B4 SINE B4 -69 223 2 2 1383 857 45 64 0 chr1 104623364 104623520 -92571912 + (TA)n Simple_repeat Simple_repeat 2 167 0 2 1383 987 55 0 0 chr1 104623523 104623651 -92571781 - B1_Mus2 SINE Alu -6 141 14 2 1383 375 176 68 128 chr1 104623552 104623669 -92571763 - MT2B LTR ERVL -337 264 155 2 1383 324 278 14 27 chr1 104623749 104623897 -92571535 - Lx6 LINE L1 -1 7459 7314 2 1383 4177 271 34 5 chr1 104623911 104625015 -92570417 - Lx7 LINE L1 -429 7267 6133 2 1383 4816 64 0 7 chr1 104625065 104625678 -92569754 - L1Md_F2 LINE L1 -15 6567 5959 2 1383 906 243 23 128 chr1 104625678 104626117 -92569315 - L1_Mur3 LINE L1 -951 4929 4537 2 1383 1172 229 60 82 chr1 104626120 104626501 -92568931 - L1_Mur3 LINE L1 -2239 3641 3271 2 1383 2381 180 10 14 chr1 104626501 104626985 -92568447 - Lx2 LINE L1 -2 6995 6514 2 1383 1172 229 60 82 chr1 104626985 104627137 -92568295 - L1_Mur3 LINE L1 -2610 3270 3120 2 1383 5814 124 8 24 chr1 104627154 104628062 -92567370 - Lx3_Mus LINE L1 -8 7001 6109 2 1383 2667 191 57 21 chr1 104628065 104628684 -92566748 + RLTR22_Mur LTR ERVK 130 770 -1078 2 1383 464 311 36 139 chr1 104628694 104628974 -92566458 + RMER12 LTR ERVK 1072 1322 0 2 1383 228 179 0 0 chr1 104628974 104629013 -92566419 + ORR1C2 LTR MaLR 333 371 -13 2 1383 25 31 0 0 chr1 104629204 104629236 -92566196 + AT_rich Low_complexity Low_complexity 1 32 0 2 1383 297 0 0 0 chr1 104629265 104629298 -92566134 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1383 198 143 0 0 chr1 104629421 104629456 -92565976 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1383 22 35 0 0 chr1 104629652 104629681 -92565751 + AT_rich Low_complexity Low_complexity 1 29 0 2 1383 893 296 80 26 chr1 104631402 104631704 -92563728 - MTE2a LTR MaLR 0 379 62 2 1383 225 188 0 0 chr1 104632269 104632317 -92563115 + T-rich Low_complexity Low_complexity 1 48 0 2 1383 411 38 0 0 chr1 104632396 104632449 -92562983 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 1383 891 346 56 11 chr1 104633248 104633607 -92561825 - MTE2b LTR MaLR -4 375 1 2 1383 342 383 35 90 chr1 104633758 104634060 -92561372 + B4 SINE B4 1 292 0 2 1383 234 0 0 0 chr1 104634065 104634091 -92561341 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1383 235 279 0 0 chr1 104634093 104634154 -92561278 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1383 204 111 0 0 chr1 104634623 104634659 -92560773 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1383 334 290 113 0 chr1 104635111 104635235 -92560197 - MLT2B3 LTR ERVL -416 138 1 2 1383 378 0 0 0 chr1 104635819 104635861 -92559571 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2 1383 415 317 48 37 chr1 104636685 104637062 -92558370 + MuRRS4-int LTR ERV1 1323 1703 -3360 2 1383 308 24 24 0 chr1 104637812 104637853 -92557579 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1383 553 335 45 60 chr1 104637859 104638192 -92557240 + RLTR6-int LTR ERV1 3502 3878 -3900 2 1383 921 327 31 24 chr1 104638776 104639227 -92556205 + RLTR6-int LTR ERV1 4945 5398 -2380 2 1383 491 250 38 38 chr1 104639290 104639423 -92556009 - RLTR26 LTR ERVK -508 134 2 2 1383 457 290 30 0 chr1 104639455 104639586 -92555846 - ORR1D1 LTR MaLR -1 373 239 2 1383 4181 101 21 10 chr1 104639589 104640210 -92555222 + L1_Mus2 LINE L1 5937 6564 -2 2 1383 28 48 0 0 chr1 104640212 104640254 -92555178 + AT_rich Low_complexity Low_complexity 1 42 0 2 1383 1864 165 78 0 chr1 104640255 104640601 -92554831 + Lx2 LINE L1 6619 6991 -6 2 1383 186 71 0 0 chr1 104640601 104640629 -92554803 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1383 2628 172 21 54 chr1 104640647 104641374 -92554058 + RMER17C-int LTR ERVK 2223 2823 -415 2 1383 676 132 28 142 chr1 104641374 104641550 -92553882 - RLTR26 LTR ERVK 0 642 487 2 1383 1971 184 57 101 chr1 104641525 104642016 -92553416 - RLTR26 LTR ERVK -99 543 72 2 1383 393 75 0 0 chr1 104642016 104642069 -92553363 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1383 1971 184 57 101 chr1 104642069 104642104 -92553328 - RLTR26 LTR ERVK -571 71 40 2 1383 1041 189 147 29 chr1 104642114 104642386 -92553046 + RMER17C-int LTR ERVK 2935 3238 0 2 1383 395 259 61 39 chr1 104642386 104642849 -92552583 + RMER17C LTR ERVK 1 351 -59 2 1383 269 239 14 14 chr1 104642875 104642947 -92552485 + GA-rich Low_complexity Low_complexity 1 72 0 2 1383 180 0 0 0 chr1 104643101 104643121 -92552311 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1383 245 328 118 0 chr1 104643303 104643422 -92552010 + MTE2a LTR MaLR 7 139 -240 2 1383 318 354 91 54 chr1 104643363 104643736 -92551696 + MT2A LTR ERVL 77 463 -70 2 1383 408 20 0 0 chr1 104643984 104644033 -92551399 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1383 494 362 31 16 chr1 104644041 104644232 -92551200 - B4A SINE B4 -44 248 55 2 1383 497 105 11 0 chr1 104644476 104644571 -92550861 + (TC)n Simple_repeat Simple_repeat 1 96 0 2 1383 186 43 0 0 chr1 104644765 104644788 -92550644 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1383 317 395 59 0 chr1 104645781 104645900 -92549532 - RSINE1 SINE B4 -4 161 36 2 1383 554 133 10 10 chr1 104646054 104646153 -92549279 - RMER17D2 LTR ERVK 0 809 711 2 1383 2156 159 43 33 chr1 104646134 104646594 -92548838 - RMER17D2 LTR ERVK -332 477 13 2 1383 622 276 63 39 chr1 104647413 104647620 -92547812 - B4A SINE B4 -12 280 69 2 1383 234 105 0 0 chr1 104648810 104648848 -92546584 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1383 225 83 0 0 chr1 104649067 104649103 -92546329 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1383 240 35 0 0 chr1 104649816 104649845 -92545587 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1383 317 366 7 78 chr1 104649979 104650133 -92545299 - B4A SINE B4 -141 151 9 2 1383 288 366 39 113 chr1 104650626 104651008 -92544424 - LTR48 LTR ERV1 -26 761 408 2 1383 242 322 11 0 chr1 104651139 104651226 -92544206 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2 1383 1128 286 27 8 chr1 104651236 104651603 -92543829 + ORR1D1 LTR MaLR 1 374 0 2 1383 2821 201 31 39 chr1 104651634 104652280 -92543152 + RLTR26 LTR ERVK 2 642 0 2 1383 246 362 66 9 chr1 104652496 104652602 -92542830 - B4A SINE B4 -180 112 1 2 1383 22 56 0 0 chr1 104653409 104653445 -92541987 + AT_rich Low_complexity Low_complexity 1 36 0 2 1383 325 297 0 0 chr1 104654081 104654155 -92541277 + RSINE1 SINE B4 27 100 -65 2 1383 423 38 0 0 chr1 104654202 104654255 -92541177 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1383 194 91 30 0 chr1 104654306 104654339 -92541093 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2 1383 481 285 57 64 chr1 104654857 104655138 -92540294 + L1MD1 LINE L1 5701 5979 -263 2 1383 461 335 78 36 chr1 104655451 104655785 -92539647 + Lx8 LINE L1 7010 7357 -116 2 1383 305 279 108 24 chr1 104656207 104656420 -92539012 + L1MA10 LINE L1 5987 6217 -117 2 1383 23 68 0 0 chr1 104656801 104656845 -92538587 + AT_rich Low_complexity Low_complexity 1 44 0 2 1383 711 134 0 0 chr1 104658077 104658219 -92537213 + (TC)n Simple_repeat Simple_repeat 1 142 0 2 1383 315 85 0 0 chr1 104658219 104658266 -92537166 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1383 1082 331 19 0 chr1 104658280 104658642 -92536790 + Lx9 LINE L1 6359 6727 -917 2 1383 3338 8 0 0 chr1 104659087 104659462 -92535970 + L1Md_A LINE L1 6206 6580 -2 2 1383 301 172 45 40 chr1 104659498 104659578 -92535854 + RLTR6-int LTR ERV1 6170 6232 -1546 2 1383 573 357 17 17 chr1 104659979 104660281 -92535151 + RLTR45-int LTR ERVK 1336 1637 -5607 2 1383 709 327 33 53 chr1 104660479 104660934 -92534498 + MuRRS4-int LTR ERV1 4380 4825 -238 2 1383 1016 295 67 15 chr1 104660630 104661122 -92534310 + ETnERV2-int LTR ERVK 7385 7761 -456 2 1383 1080 197 42 0 chr1 104661193 104661386 -92534046 + ETnERV2-int LTR ERVK 6647 6847 -559 2 1383 4642 38 0 0 chr1 104661436 104661985 -92533447 - L1Md_T LINE L1 0 6582 6034 2 1383 821 259 40 5 chr1 104662000 104662202 -92533230 + ETnERV2-int LTR ERVK 6872 7080 -326 2 1383 799 272 203 14 chr1 104662262 104662631 -92532801 + RLTR45 LTR ERVK 42 480 -2 3 1383 372 301 146 14 chr1 104662637 104662856 -92532576 + Lx9 LINE L1 7164 7411 -233 2 1383 311 0 26 0 chr1 104662860 104662899 -92532533 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1383 209 33 33 0 chr1 104663307 104663337 -92532095 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 3 1383 1248 90 0 0 chr1 104663331 104663415 -92532017 + (TTC)n Simple_repeat Simple_repeat 1 84 0 3 1383 1357 34 6 17 chr1 104663415 104663595 -92531837 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 3 1383 1248 90 0 0 chr1 104663595 104663688 -92531744 + (TTC)n Simple_repeat Simple_repeat 1 93 0 3 1383 246 235 0 38 chr1 104663688 104663741 -92531691 + polypyrimidine Low_complexity Low_complexity 3 53 0 3 1383 369 311 58 26 chr1 104663741 104663896 -92531536 + Lx8 LINE L1 6850 7009 -464 3 1383 27 62 0 0 chr1 104664062 104664110 -92531322 + AT_rich Low_complexity Low_complexity 1 48 0 3 1383 4742 204 33 17 chr1 104664174 104665623 -92529809 + Lx4A LINE L1 4732 6212 -846 3 1383 264 105 0 0 chr1 104665614 104665673 -92529759 + L1_Mus2 LINE L1 6522 6636 0 3 1383 636 340 75 42 chr1 104665828 104666212 -92529220 + MTD LTR MaLR 9 405 -14 3 1383 205 191 24 0 chr1 104666565 104666607 -92528825 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1383 198 91 0 0 chr1 104666746 104666779 -92528653 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 3 1383 327 246 14 14 chr1 104666787 104666861 -92528571 - RMER20B LTR ERVK -27 600 527 3 1383 220 200 0 0 chr1 104667435 104667485 -92527947 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1383 28 79 0 0 chr1 104667534 104667597 -92527835 + AT_rich Low_complexity Low_complexity 1 63 0 3 1383 26 50 0 0 chr1 104668025 104668065 -92527367 + AT_rich Low_complexity Low_complexity 1 40 0 3 1383 267 103 0 0 chr1 104668151 104668190 -92527242 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1383 369 0 0 0 chr1 104668200 104668241 -92527191 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1383 382 382 22 17 chr1 104668318 104668499 -92526933 - B3A SINE B2 -8 190 9 3 1383 1239 254 59 10 chr1 104668666 104669055 -92526377 - Lx9 LINE L1 -306 7338 6931 3 1383 221 0 35 0 chr1 104669723 104669752 -92525680 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1383 351 0 0 0 chr1 104669874 104669913 -92525519 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1383 339 99 36 24 chr1 104670140 104670223 -92525209 + T-rich Low_complexity Low_complexity 2 85 0 3 1383 1056 103 7 0 chr1 104670223 104670369 -92525063 - B1_Mm SINE Alu 0 147 1 3 1383 4681 137 16 22 chr1 104670504 104671647 -92523785 + L1Md_A LINE L1 411 1545 -4338 3 1383 22153 77 41 31 chr1 104671648 104674345 -92521087 + L1Md_A LINE L1 2114 4921 -962 3 1383 230 272 47 37 chr1 104674345 104674452 -92520980 - MER72B LTR ERV1 -381 387 280 3 1383 22153 77 41 31 chr1 104674452 104675089 -92520343 + L1Md_A LINE L1 4922 5586 -297 3 1383 8153 46 5 0 chr1 104675089 104676082 -92519350 + L1Md_F3 LINE L1 5587 6584 0 3 1383 420 391 9 43 chr1 104676259 104676470 -92518962 + ORR1E LTR MaLR 4 207 -152 3 1383 2119 30 81 50 chr1 104676509 104676792 -92518640 + RLTR10B LTR ERVK 1 292 0 3 1383 24332 133 6 18 chr1 104676798 104681235 -92514197 - L1_Mus1 LINE L1 -615 5952 1576 3 1383 567 259 10 5 chr1 104681220 104681414 -92514018 - L1_Mur3 LINE L1 -2186 3694 3500 3 1383 26 0 0 0 chr1 104681435 104681461 -92513971 + AT_rich Low_complexity Low_complexity 1 26 0 3 1383 1490 251 52 34 chr1 104681548 104682260 -92513172 + L1_Mur3 LINE L1 2654 3378 -2502 3 1383 423 0 0 0 chr1 104682582 104682629 -92512803 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1383 558 86 0 0 chr1 104683181 104683262 -92512170 + (TCC)n Simple_repeat Simple_repeat 1 81 0 3 1383 1488 168 13 17 chr1 104683262 104683564 -92511868 - Lx LINE L1 -4 6650 6350 3 1383 2703 140 11 4 chr1 104683557 104684017 -92511415 - Lx LINE L1 -426 6228 5766 3 1383 371 354 75 82 chr1 104684484 104684764 -92510668 - B4A SINE B4 -2 290 13 3 1383 28 0 0 0 chr1 104685093 104685121 -92510311 + AT_rich Low_complexity Low_complexity 1 28 0 3 1383 2227 204 30 78 chr1 104685293 104685868 -92509564 + L1VL4 LINE L1 195 741 -5561 3 1383 1227 165 15 8 chr1 104685863 104686125 -92509307 - L1_Mm LINE L1 -872 5011 4748 3 1383 1925 162 8 10 chr1 104686118 104686510 -92508922 + L1_Mur2 LINE L1 4990 5380 -497 3 1383 2395 161 34 30 chr1 104686510 104687130 -92508302 + RMER17D2 LTR ERVK 1 611 -140 3 1383 5901 173 23 12 chr1 104687191 104687438 -92507994 + Lx LINE L1 5372 5620 -263 3 1383 2275 87 143 11 chr1 104687438 104687788 -92507644 + MTA_Mm LTR MaLR 1 396 0 3 1383 5901 148 20 12 chr1 104687788 104688801 -92506631 + Lx LINE L1 5621 6642 -12 3 1383 1187 227 26 6 chr1 104688806 104689147 -92506285 + L1_Mm LINE L1 4444 4791 -1092 3 1383 521 205 8 0 chr1 104689147 104689274 -92506158 + GA-rich Low_complexity Low_complexity 3 130 0 3 1383 404 321 14 28 chr1 104689358 104689502 -92505930 + B4A SINE B4 138 279 -13 3 1383 658 0 24 0 chr1 104689721 104689803 -92505629 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 3 1383 599 341 9 0 chr1 104689810 104690024 -92505408 - Lx5 LINE L1 -84 6966 6751 3 1383 469 335 6 0 chr1 104690049 104690213 -92505219 + Lx5 LINE L1 6571 6735 -315 3 1383 1042 306 65 12 chr1 104690594 104690918 -92504514 + ORR1E LTR MaLR 19 359 0 3 1383 187 347 155 7 chr1 104690982 104691130 -92504302 + MIR SINE MIR 3 172 -90 3 1383 547 316 29 42 chr1 104691304 104691515 -92503917 + B3A SINE B2 11 216 0 3 1383 3106 66 8 0 chr1 104691912 104692305 -92503127 + MTA_Mm LTR MaLR 1 396 0 3 1383 7784 78 12 12 chr1 104692305 104692683 -92502749 + MTA_Mm-int LTR MaLR 1 385 -713 3 1383 2583 82 0 6 chr1 104692683 104693040 -92502392 + L1Md_F2 LINE L1 6216 6570 -12 3 1383 7784 78 12 12 chr1 104693040 104693759 -92501673 + MTA_Mm-int LTR MaLR 386 1098 0 3 1383 3226 61 2 0 chr1 104693759 104694154 -92501278 + MTA_Mm LTR MaLR 1 396 0 3 1383 2770 131 45 1 chr1 104694222 104694791 -92500641 - L1_Mus4 LINE L1 -709 5927 5341 3 1383 502 107 0 0 chr1 104694794 104694869 -92500563 - L1_Mur2 LINE L1 -713 5164 5090 3 1383 4178 134 10 14 chr1 104694869 104694949 -92500483 + L1_Mus4 LINE L1 5893 5972 -664 3 1383 4541 168 40 11 chr1 104694949 104695401 -92500031 + RMER17A2 LTR ERVK 1 471 -435 3 1383 581 0 14 0 chr1 104695401 104695470 -92499962 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1383 4541 168 40 11 chr1 104695470 104695898 -92499534 + RMER17A2 LTR ERVK 472 905 -1 3 1383 4178 134 10 14 chr1 104695898 104696513 -92498919 + L1_Mus4 LINE L1 5973 6585 -51 3 1383 418 320 100 48 chr1 104697654 104697864 -92497568 + ID_B1 SINE B4 4 224 0 3 1383 22 35 0 0 chr1 104698389 104698418 -92497014 + AT_rich Low_complexity Low_complexity 1 29 0 3 1383 3943 86 48 41 chr1 104698466 104699047 -92496385 + LTRIS_Mus LTR ERV1 1 585 -2 3 1383 12980 217 29 49 chr1 104699052 104704638 -92490794 + MuRRS-int LTR ERV1 6 5800 -1978 3 1383 1797 323 32 33 chr1 104705373 104706487 -92488945 + MuRRS-int LTR ERV1 6666 7778 0 3 1383 4003 96 23 48 chr1 104706487 104707089 -92488343 + LTRIS_Mus LTR ERV1 1 587 0 3 1383 324 0 0 0 chr1 104707247 104707283 -92488149 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1383 438 20 0 0 chr1 104707283 104707333 -92488099 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1383 893 319 7 29 chr1 104707337 104707615 -92487817 - B4A SINE B4 -19 273 2 3 1383 5766 144 9 20 chr1 104707624 104708594 -92486838 + RLTR13C1 LTR ERVK 1 960 -23 3 1383 210 237 0 0 chr1 104708838 104708892 -92486540 - MIRc SINE MIR -111 157 100 3 1383 441 390 35 39 chr1 104710482 104710741 -92484691 + B4A SINE B4 9 266 -26 3 1383 207 0 0 0 chr1 104710826 104710849 -92484583 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1383 6282 155 25 28 chr1 104711207 104712953 -92482479 + L1_Mur1 LINE L1 5 1746 -4140 3 1383 12993 117 51 45 chr1 104712946 104714593 -92480839 + L1_Mur1 LINE L1 3382 5036 -850 3 1383 3483 38 51 36 chr1 104714593 104715061 -92480371 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1383 12993 117 51 45 chr1 104715061 104715903 -92479529 + L1_Mur1 LINE L1 5037 5886 0 3 1383 504 32 0 0 chr1 104716023 104716085 -92479347 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1383 504 32 0 0 chr1 104716122 104716184 -92479248 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1383 234 315 108 89 chr1 104716532 104716689 -92478743 + B4 SINE B4 2 161 -131 3 1383 245 267 49 16 chr1 104716936 104716997 -92478435 - B4 SINE B4 -16 276 214 3 1383 7723 37 15 1 chr1 104717016 104718056 -92477376 - L1Md_F2 LINE L1 -2 6580 5526 3 1383 1045 163 44 0 chr1 104718426 104718629 -92476803 + Lx2 LINE L1 6786 6997 0 3 1383 587 315 11 11 chr1 104719183 104719363 -92476069 + B3A SINE B2 4 183 -15 3 1383 253 367 11 22 chr1 104719367 104719548 -92475884 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1383 234 0 0 0 chr1 104719774 104719800 -92475632 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1383 208 284 0 0 chr1 104720352 104720419 -92475013 + A-rich Low_complexity Low_complexity 4 70 0 3 1383 223 250 0 0 chr1 104722104 104722148 -92473284 + polypurine Low_complexity Low_complexity 1 44 0 3 1383 186 43 0 0 chr1 104724054 104724077 -92471355 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1383 227 29 0 54 chr1 104724622 104724659 -92470773 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1383 6491 119 4 6 chr1 104724728 104724756 -92470676 - L1_Mus1 LINE L1 0 6567 6538 3 1383 222 37 0 0 chr1 104724756 104724783 -92470649 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1383 30694 113 6 8 chr1 104724783 104726256 -92469176 - L1_Mus1 LINE L1 -30 6537 5084 3 172 3651 28 2 0 chr1 104726256 104726687 -92468745 - L1Md_A LINE L1 0 6582 6151 3 1384 30694 105 8 9 chr1 104726687 104730789 -92464643 - L1_Mus1 LINE L1 -800 5083 976 3 1384 3364 65 22 2 chr1 104730790 104731235 -92464197 - L1Md_F3 LINE L1 -14 6570 6117 3 1384 1841 60 4 0 chr1 104731235 104731470 -92463962 + L1Md_F3 LINE L1 5896 6131 -453 3 1384 3197 132 21 96 chr1 104731465 104732093 -92463339 - L1_Mus1 LINE L1 -5648 990 410 3 1384 38 0 0 0 chr1 104732732 104732770 -92462662 + AT_rich Low_complexity Low_complexity 1 38 0 3 1384 360 0 0 0 chr1 104734968 104735008 -92460424 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1384 306 67 0 0 chr1 104735290 104735335 -92460097 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 1384 191 32 65 0 chr1 104735861 104735892 -92459540 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1384 555 245 25 31 chr1 104736093 104736253 -92459179 - RLTR15 LTR ERVK -198 161 3 3 1384 222 295 49 0 chr1 104736387 104736448 -92458984 - RSINE1 SINE B4 -19 146 83 3 1384 446 336 17 0 chr1 104736719 104736835 -92458597 + B4A SINE B4 2 119 -173 3 1384 222 299 14 36 chr1 104736891 104737030 -92458402 + (CA)n Simple_repeat Simple_repeat 1 136 0 3 1384 216 204 0 0 chr1 104737126 104737170 -92458262 + T-rich Low_complexity Low_complexity 1 44 0 3 1384 263 222 79 0 chr1 104739347 104739410 -92456022 + MTEa LTR MaLR 218 285 -94 4 1384 331 285 33 46 chr1 104739937 104740088 -92455344 - L1MA6 LINE L1 -11 6289 6141 4 1384 330 45 0 0 chr1 104740455 104740499 -92454933 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 4 1384 21 89 0 0 chr1 104740925 104740981 -92454451 + AT_rich Low_complexity Low_complexity 1 56 0 4 1384 911 316 35 12 chr1 104741120 104741379 -92454053 - B4A SINE B4 -22 270 6 4 1384 309 345 111 65 chr1 104741688 104741967 -92453465 - ORR1E LTR MaLR -6 353 62 4 1384 813 107 0 0 chr1 104742037 104742159 -92453273 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 4 1384 223 360 13 0 chr1 104742299 104742374 -92453058 - B4A SINE B4 -169 123 48 4 1384 804 21 0 0 chr1 104742506 104742600 -92452832 + (TCC)n Simple_repeat Simple_repeat 3 96 0 4 1384 1007 70 0 0 chr1 104742602 104742730 -92452702 - B1_Mus1 SINE Alu -19 129 2 4 1384 240 280 13 0 chr1 104743880 104743955 -92451477 - L1M1 LINE L1 -562 5741 5666 4 1384 631 243 122 17 chr1 104743974 104744204 -92451228 + L1M2 LINE L1 5303 5556 -741 4 1384 1651 152 0 11 chr1 104744735 104745008 -92450424 - RLTR10E LTR ERVK 0 311 42 4 1384 503 360 0 13 chr1 104745595 104745747 -92449685 + B4 SINE B4 81 230 -62 4 1384 357 145 0 0 chr1 104745806 104745868 -92449564 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1384 1212 103 0 0 chr1 104746207 104746509 -92448923 + (TTC)n Simple_repeat Simple_repeat 1 302 0 4 1384 638 304 9 19 chr1 104746553 104746764 -92448668 + B3 SINE B2 2 210 -6 4 1384 760 298 126 42 chr1 104746989 104747322 -92448110 - RLTR9A LTR ERVK 0 368 8 4 1384 346 304 87 0 chr1 104747918 104748033 -92447399 + B3 SINE B2 92 216 0 4 1384 891 319 70 6 chr1 104748052 104748380 -92447052 - MTE2b LTR MaLR -30 349 1 4 1384 450 0 0 0 chr1 104748611 104748661 -92446771 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1384 267 352 35 63 chr1 104748663 104748948 -92446484 - B4A SINE B4 -12 280 4 4 1384 183 156 0 0 chr1 104749024 104749056 -92446376 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1384 641 88 271 34 chr1 104749354 104749472 -92445960 + B1_Mm SINE Alu 2 147 0 4 1384 207 0 0 0 chr1 104750254 104750277 -92445155 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1384 199 363 39 10 chr1 104750356 104750459 -92444973 - MIRb SINE MIR -77 191 86 4 1384 338 274 142 0 chr1 104750549 104750662 -92444770 + MTEa LTR MaLR 1 129 -250 4 1384 576 287 102 30 chr1 104750671 104750912 -92444520 + ORR1D1 LTR MaLR 1 265 -105 4 1384 762 272 14 10 chr1 104750892 104751100 -92444332 + ORR1D1 LTR MaLR 164 372 -2 4 1384 408 276 211 7 chr1 104751151 104751285 -92444147 + MTE2b LTR MaLR 165 327 -52 4 1384 831 212 57 95 chr1 104751285 104751620 -92443812 - RLTRETN_Mm LTR ERVK 0 403 33 4 1384 186 150 0 0 chr1 104752602 104752642 -92442790 + (ATG)n Simple_repeat Simple_repeat 3 42 0 4 1384 204 97 0 0 chr1 104752670 104752701 -92442731 + (CAG)n Simple_repeat Simple_repeat 2 32 0 4 1384 756 331 5 12 chr1 104753053 104753331 -92442101 - Lx8 LINE L1 -159 7314 7027 4 1384 617 337 72 47 chr1 104753430 104753791 -92441641 + Lx8 LINE L1 6488 6857 -616 4 1384 420 335 29 53 chr1 104753831 104754039 -92441393 - MLT1A0 LTR MaLR -26 339 137 4 1384 582 246 46 0 chr1 104754221 104754351 -92441081 + B3A SINE B2 1 136 -62 4 1384 415 278 46 9 chr1 104755466 104755575 -92439857 + B3A SINE B2 5 117 -81 4 1384 369 0 0 0 chr1 104756089 104756130 -92439302 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1384 237 246 0 71 chr1 104756170 104756240 -92439192 - B4A SINE B4 -16 276 212 4 1384 263 366 67 24 chr1 104756317 104756482 -92438950 - B4A SINE B4 -65 227 56 4 1384 525 276 0 50 chr1 104757280 104757399 -92438033 - ORR1E LTR MaLR -206 153 40 4 1384 2332 66 119 11 chr1 104757399 104757751 -92437681 + RLTR10 LTR ERVK 1 390 0 4 1384 525 276 0 50 chr1 104757751 104757791 -92437641 - ORR1E LTR MaLR -320 39 2 4 1384 267 93 0 0 chr1 104758163 104758206 -92437226 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1384 22 0 0 0 chr1 104758248 104758270 -92437162 + AT_rich Low_complexity Low_complexity 1 22 0 4 1384 267 324 63 28 chr1 104758344 104758487 -92436945 - ORR1C2 LTR MaLR -236 148 1 4 1384 1127 94 12 0 chr1 104758726 104758896 -92436536 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 4 1384 1003 296 78 16 chr1 104759366 104759751 -92435681 - Lx8 LINE L1 -358 7115 6707 4 1384 7776 53 9 12 chr1 104760231 104761408 -92434024 - L1Md_F2 LINE L1 0 6582 5409 4 1384 3872 72 4 4 chr1 104761409 104761929 -92433503 + L1Md_F2 LINE L1 4891 5410 -473 4 1384 1020 284 18 4 chr1 104762873 104763145 -92432287 - Lx6 LINE L1 0 7460 7185 4 1384 1738 179 42 32 chr1 104763215 104763693 -92431739 + RLTR31_Mm LTR ERVK 17 561 0 4 1384 693 53 0 0 chr1 104764020 104764114 -92431318 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1384 200 167 0 20 chr1 104764207 104764256 -92431176 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 4 1384 316 384 51 46 chr1 104765556 104765772 -92429660 - RMER2 LTR ERV1 -22 545 329 4 1384 980 141 6 0 chr1 104765982 104766159 -92429273 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 1384 297 0 0 0 chr1 104766161 104766194 -92429238 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 4 1384 360 303 123 33 chr1 104766361 104766661 -92428771 - MuLV-int LTR ERV1 -116 7490 7164 4 1384 286 269 139 35 chr1 104766507 104766680 -92428752 - RNERVK23-int LTR ERVK -615 7602 7412 4 1384 7070 100 20 16 chr1 104767762 104768781 -92426651 + RLTR13D5 LTR ERVK 1 1023 0 4 1384 456 161 43 200 chr1 104768896 104769036 -92426396 - RLTR22_Mur LTR ERVK -5 1843 1726 4 1384 3442 76 14 23 chr1 104769036 104769520 -92425912 - L1_Mus3 LINE L1 -137 6429 5950 4 1384 602 95 46 38 chr1 104769520 104769771 -92425661 + L1_Mus3 LINE L1 6507 6638 0 4 1384 998 134 0 6 chr1 104769771 104769929 -92425503 - RLTR22_Mur LTR ERVK -99 1749 1593 4 1384 5366 107 15 4 chr1 104770170 104770978 -92424454 - RLTR22_Mus LTR ERVK -991 817 1 4 1384 1018 338 38 16 chr1 104771562 104772010 -92423422 - MuRRS4-int LTR ERV1 -1058 4005 3548 4 1384 1840 224 78 43 chr1 104772180 104772808 -92422624 - BGLII_B LTR ERVK -6 547 1 4 1384 577 282 44 58 chr1 104773974 104774200 -92421232 - RMER2 LTR ERV1 -17 550 328 4 1384 582 316 80 48 chr1 104774260 104774864 -92420568 - L1MD1 LINE L1 -291 5951 5329 4 1384 262 266 204 0 chr1 104775115 104775228 -92420204 - L1MD1 LINE L1 -1244 4902 4767 4 1384 21 0 0 0 chr1 104775647 104775668 -92419764 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 1829 161 23 3 chr1 104775707 104776012 -92419420 - RLTR10E LTR ERVK 0 311 1 4 1384 399 296 39 58 chr1 104776176 104776330 -92419102 - RSINE1 SINE B4 -2 163 13 4 1384 4112 184 115 7 chr1 104776471 104777291 -92418141 + RMER13B LTR ERVK 1 908 0 4 1384 515 90 0 33 chr1 104777583 104777675 -92417757 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1384 183 23 62 83 chr1 104778092 104778140 -92417292 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1384 23 68 0 0 chr1 104778299 104778343 -92417089 + AT_rich Low_complexity Low_complexity 1 44 0 4 1384 279 241 0 49 chr1 104778507 104778568 -92416864 + B3A SINE B2 3 60 -138 4 1384 24 32 0 0 chr1 104778746 104778777 -92416655 + AT_rich Low_complexity Low_complexity 1 31 0 4 1384 212 242 0 0 chr1 104778964 104779030 -92416402 + T-rich Low_complexity Low_complexity 1 66 0 4 1384 441 54 0 0 chr1 104779030 104779086 -92416346 + (TATG)n Simple_repeat Simple_repeat 1 56 0 4 1384 404 392 13 0 chr1 104779088 104779241 -92416191 - B3A SINE B2 -42 156 2 4 1384 1117 81 0 0 chr1 104779482 104779630 -92415802 + B1_Mus1 SINE Alu 1 148 0 4 1384 21 0 0 0 chr1 104779630 104779651 -92415781 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 879 263 92 23 chr1 104780007 104780311 -92415121 - Lx8 LINE L1 -32 7441 7117 4 1384 28 71 0 0 chr1 104780734 104780790 -92414642 + AT_rich Low_complexity Low_complexity 1 56 0 4 1384 601 171 8 8 chr1 104781666 104781790 -92413642 - Lx2 LINE L1 -2 6995 6872 4 1384 450 49 0 0 chr1 104783371 104783432 -92412000 + (CAA)n Simple_repeat Simple_repeat 3 63 0 4 1384 659 354 32 18 chr1 104783507 104783789 -92411643 - B4A SINE B4 -2 290 5 4 1384 3580 216 84 90 chr1 104783904 104784044 -92411388 - RLTR25A LTR ERVK 0 1103 963 4 1384 351 0 0 0 chr1 104784044 104784083 -92411349 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1384 258 81 0 0 chr1 104784083 104784119 -92411313 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1384 3580 216 84 90 chr1 104784119 104785083 -92410349 - RLTR25A LTR ERVK -141 962 6 4 1384 1706 197 83 19 chr1 104785134 104785497 -92409935 + RMER19B LTR ERVK 1 386 -516 4 1384 2371 161 38 73 chr1 104785521 104786621 -92408811 - RMER17A2 LTR ERVK -4 902 1 4 1384 1023 264 57 9 chr1 104786621 104786886 -92408546 + RMER19B LTR ERVK 183 619 -283 4 1384 615 67 0 0 chr1 104787083 104787172 -92408260 + (A)n Simple_repeat Simple_repeat 1 89 0 4 1384 245 233 0 0 chr1 104787246 104787289 -92408143 - B3 SINE B2 -173 43 1 4 1384 2736 121 7 48 chr1 104787849 104788310 -92407122 + L1_Mus3 LINE L1 6190 6631 -7 4 1384 25 83 0 0 chr1 104788314 104788374 -92407058 + AT_rich Low_complexity Low_complexity 1 60 0 4 1384 315 0 0 0 chr1 104788374 104788409 -92407023 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 1384 456 19 0 0 chr1 104789113 104789166 -92406266 + (TATG)n Simple_repeat Simple_repeat 2 54 0 4 1384 254 413 0 16 chr1 104789173 104789301 -92406131 - RSINE1 SINE B4 -35 130 5 4 1384 13682 187 19 26 chr1 104789330 104792494 -92402938 - Lx LINE L1 -532 6122 2997 4 1384 396 0 0 0 chr1 104792494 104792538 -92402894 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 1384 13682 195 17 31 chr1 104792538 104792633 -92402799 - Lx LINE L1 -2887 2996 2891 4 1384 905 131 6 0 chr1 104792638 104792814 -92402618 + (TTCCC)n Simple_repeat Simple_repeat 1 177 0 4 1384 1188 79 0 0 chr1 104792822 104793000 -92402432 + (CCTTG)n Simple_repeat Simple_repeat 3 180 0 5 1384 510 119 0 0 chr1 104793017 104793101 -92402331 + (TTCCC)n Simple_repeat Simple_repeat 4 87 0 5 1384 247 333 0 0 chr1 104793134 104793212 -92402220 - ID_B1 SINE B4 -8 216 139 5 1384 275 339 25 25 chr1 104793758 104793879 -92401553 - RMER5 LTR ERV1 -18 516 396 5 1384 351 0 0 0 chr1 104793889 104793928 -92401504 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1384 261 0 0 0 chr1 104793928 104793956 -92401476 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1384 691 127 0 17 chr1 104794165 104794285 -92401147 - L1Md_Gf LINE L1 -6204 318 201 5 1384 236 352 0 0 chr1 104795117 104795205 -92400227 + (AAATG)n Simple_repeat Simple_repeat 3 90 0 5 1384 275 300 26 39 chr1 104795446 104795602 -92399830 + GA-rich Low_complexity Low_complexity 4 157 0 5 1384 381 339 40 3 chr1 104796026 104796177 -92399255 + B4A SINE B4 72 234 -58 5 1384 194 260 80 27 chr1 104796664 104796739 -92398693 + MIRc SINE MIR 187 265 -3 5 1384 225 0 0 0 chr1 104797486 104797511 -92397921 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1384 22 35 0 0 chr1 104797628 104797657 -92397775 + AT_rich Low_complexity Low_complexity 1 29 0 5 1384 759 349 24 27 chr1 104798356 104798648 -92396784 + B4A SINE B4 1 291 -1 5 1384 441 0 0 0 chr1 104799336 104799385 -92396047 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1384 877 294 35 23 chr1 104799831 104800089 -92395343 - MTEb LTR MaLR 0 379 119 5 1384 503 43 14 0 chr1 104800108 104800178 -92395254 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1384 237 232 36 0 chr1 104800185 104800241 -92395191 - MTEb LTR MaLR -321 58 1 5 1384 2988 41 0 3 chr1 104801289 104801653 -92393779 - L1Md_F3 LINE L1 -14 6570 6208 5 1384 333 241 46 0 chr1 104801653 104801761 -92393671 + L1VL1 LINE L1 4 116 -6306 5 1384 392 353 33 8 chr1 104804193 104804313 -92391119 + B4A SINE B4 1 123 -169 5 1384 252 0 0 0 chr1 104804861 104804889 -92390543 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1384 279 0 0 0 chr1 104804989 104805020 -92390412 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1384 193 29 0 56 chr1 104805023 104805059 -92390373 + (TTTTTG)n Simple_repeat Simple_repeat 6 39 0 5 1384 1112 76 7 0 chr1 104805059 104805203 -92390229 - B1_Mus2 SINE Alu 0 147 3 5 1384 2326 113 68 89 chr1 104805790 104806275 -92389157 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1384 389 97 14 0 chr1 104806530 104806602 -92388830 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 5 1384 306 0 0 0 chr1 104807404 104807438 -92387994 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1384 240 401 24 45 chr1 104807473 104807763 -92387669 - B4A SINE B4 -4 288 5 5 1384 7037 96 2 18 chr1 104807781 104808782 -92386650 - L1Md_F2 LINE L1 -11 6571 5587 5 1384 281 68 0 22 chr1 104808792 104808837 -92386595 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 1384 2841 74 3 0 chr1 104808914 104809277 -92386155 - L1_Mus1 LINE L1 -45 6522 6159 5 1384 326 28 82 14 chr1 104809285 104809358 -92386074 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1384 3910 125 31 77 chr1 104809772 104810552 -92384880 + RMER17A LTR ERVK 5 748 -3 5 1384 483 18 0 0 chr1 104811695 104811751 -92383681 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1384 216 295 0 0 chr1 104811751 104811812 -92383620 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1384 508 202 96 0 chr1 104811859 104811963 -92383469 + MTD LTR MaLR 275 388 -31 5 1384 438 372 31 62 chr1 104812209 104812377 -92383055 - L3 LINE CR1 -56 4433 4270 5 1384 951 85 28 14 chr1 104812377 104812520 -92382912 - B1_Mus2 SINE Alu 0 147 3 5 1384 438 372 31 62 chr1 104812520 104812706 -92382726 - L3 LINE CR1 -220 4269 4090 5 1384 5973 112 1 0 chr1 104813217 104814288 -92381144 + L1_Mus3 LINE L1 4943 6015 -623 5 1384 588 376 16 0 chr1 104814395 104814589 -92380843 - B4A SINE B4 -4 288 92 5 1384 203 260 0 0 chr1 104814790 104814840 -92380592 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 5 1384 1755 145 75 7 chr1 104814963 104815269 -92380163 - Lx2 LINE L1 0 6997 6671 5 1384 422 361 47 10 chr1 104815301 104815494 -92379938 - MER58A DNA MER1_type -24 200 1 5 1384 193 391 23 15 chr1 104815527 104815657 -92379775 + MIR3 SINE MIR 59 189 -19 5 1384 297 0 0 0 chr1 104815743 104815776 -92379656 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1384 396 371 29 0 chr1 104815872 104816012 -92379420 - B4A SINE B4 -148 144 1 5 1384 450 0 0 0 chr1 104816073 104816123 -92379309 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1384 387 0 0 0 chr1 104816220 104816263 -92379169 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1384 1044 70 35 0 chr1 104816399 104816541 -92378891 + B1_Mus2 SINE Alu 1 147 0 5 1384 248 127 18 0 chr1 104816541 104816596 -92378836 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 5 1384 479 31 15 0 chr1 104816663 104816728 -92378704 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 5 1384 199 289 95 12 chr1 104816909 104816993 -92378439 + L4 LINE RTE 1029 1119 -910 5 1384 926 134 7 7 chr1 104817104 104817247 -92378185 + B1_Mus1 SINE Alu 6 148 0 5 1384 339 89 0 0 chr1 104817247 104817303 -92378129 + (A)n Simple_repeat Simple_repeat 1 56 0 5 1384 422 362 54 11 chr1 104817495 104817722 -92377710 - B4A SINE B4 0 292 42 5 1384 368 97 16 0 chr1 104818159 104818221 -92377211 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1384 252 385 32 8 chr1 104818564 104818687 -92376745 + B4 SINE B4 15 140 -152 5 1384 337 129 32 11 chr1 104818692 104818763 -92376669 + ORR1A2 LTR MaLR 1 71 -275 5 1384 432 0 0 0 chr1 104818763 104818811 -92376621 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1384 244 262 22 67 chr1 104818811 104818829 -92376603 + ORR1A2 LTR MaLR 72 86 -260 5 1384 1072 102 0 0 chr1 104818901 104819048 -92376384 + B1_Mus2 SINE Alu 1 147 0 5 1384 21 0 0 0 chr1 104819249 104819270 -92376162 + AT_rich Low_complexity Low_complexity 1 21 0 5 1384 393 22 0 0 chr1 104819794 104819840 -92375592 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1384 378 0 0 0 chr1 104819840 104819881 -92375551 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1384 1007 315 50 9 chr1 104820072 104820412 -92375020 - MTEa LTR MaLR -3 376 23 5 1384 276 148 0 0 chr1 104820901 104820962 -92374470 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 5 1384 584 270 65 81 chr1 104824212 104824458 -92370974 + MTE2a LTR MaLR 127 368 -11 5 1384 26 0 0 0 chr1 104825029 104825055 -92370377 + AT_rich Low_complexity Low_complexity 1 26 0 5 1384 324 289 0 0 chr1 104825371 104825447 -92369985 + PB1 SINE Alu 47 122 -5 5 1384 28 48 0 0 chr1 104825459 104825501 -92369931 + AT_rich Low_complexity Low_complexity 1 42 0 5 1384 378 0 0 0 chr1 104826090 104826132 -92369300 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1384 266 320 96 81 chr1 104826241 104826377 -92369055 - B4A SINE B4 -141 151 14 5 1384 245 292 31 0 chr1 104826860 104826925 -92368507 - RSINE1 SINE B4 -65 100 34 5 1384 441 381 17 31 chr1 104826963 104827250 -92368182 + B4A SINE B4 8 290 -2 5 1384 744 125 0 0 chr1 104827470 104827598 -92367834 + (TTTC)n Simple_repeat Simple_repeat 3 130 0 5 1384 195 114 0 0 chr1 104827600 104827635 -92367797 + (TATG)n Simple_repeat Simple_repeat 2 36 0 5 1384 705 174 0 0 chr1 104827652 104827767 -92367665 - B2_Mm2 SINE B2 -80 115 1 5 1384 6786 56 44 1 chr1 104827930 104828834 -92366598 - L1Md_F3 LINE L1 -14 6570 5662 5 1384 475 285 127 24 chr1 104829178 104829383 -92366049 + B4 SINE B4 2 227 -65 5 1384 785 40 10 0 chr1 104829586 104829687 -92365745 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 1384 447 346 14 5 chr1 104831193 104831402 -92364030 + B3 SINE B2 1 211 -5 5 1384 314 80 0 20 chr1 104831448 104831499 -92363933 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1384 1283 116 32 0 chr1 104831532 104831721 -92363711 - MTB LTR MaLR -203 197 3 5 1384 799 335 16 8 chr1 104831727 104831983 -92363449 - MTEa LTR MaLR -70 309 52 5 1384 608 143 0 0 chr1 104832420 104832532 -92362900 + Lx3_Mus LINE L1 6898 7009 0 5 1384 387 0 0 0 chr1 104832676 104832719 -92362713 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1384 441 0 0 0 chr1 104832793 104832842 -92362590 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1384 335 396 24 18 chr1 104832859 104833026 -92362406 - B4 SINE B4 -123 169 2 5 1384 461 312 21 0 chr1 104833449 104833593 -92361839 + Lx8 LINE L1 6902 7048 -425 5 1384 951 161 70 0 chr1 104833601 104833787 -92361645 + Lx4B LINE L1 5588 5786 -1272 5 1384 570 159 0 0 chr1 104834097 104834204 -92361228 + CT-rich Low_complexity Low_complexity 2 108 0 5 1384 3974 57 2 6 chr1 104834215 104834731 -92360701 - L1Md_F2 LINE L1 0 6582 6069 5 1384 609 294 7 0 chr1 104834733 104834876 -92360556 - B1_Mur2 SINE Alu -2 147 4 5 1384 576 326 5 71 chr1 104834876 104835087 -92360345 - B3A SINE B2 -1 197 1 5 1384 2662 204 7 22 chr1 104835187 104835732 -92359700 - Lx4A LINE L1 0 7058 6522 5 1384 489 318 30 0 chr1 104835732 104835864 -92359568 - ORR1D1 LTR MaLR -223 151 16 5 1384 248 262 0 15 chr1 104836309 104836375 -92359057 + GA-rich Low_complexity Low_complexity 3 67 0 5 1384 269 277 0 15 chr1 104836482 104836548 -92358884 - B4 SINE B4 -224 68 4 5 1384 3841 229 29 32 chr1 104837462 104838339 -92357093 - RMER13B LTR ERVK -27 881 8 5 1384 432 55 0 0 chr1 104838339 104838394 -92357038 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1384 564 56 0 0 chr1 104838442 104838514 -92356918 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1384 2759 105 2 40 chr1 104838526 104838951 -92356481 + RLTR9E LTR ERVK 1 409 0 6 1384 425 362 32 13 chr1 104839437 104839591 -92355841 + B3A SINE B2 8 164 -34 6 1384 693 36 0 0 chr1 104839604 104839688 -92355744 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1384 1309 283 202 18 chr1 104839713 104840487 -92354945 - Lx6 LINE L1 -26 7434 6518 6 1384 190 338 112 56 chr1 104840846 104841006 -92354426 - MER5A DNA MER1_type -19 170 2 6 1384 378 61 0 0 chr1 104841281 104841330 -92354102 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1384 441 319 97 45 chr1 104841336 104841605 -92353827 - B4 SINE B4 -7 285 3 6 1384 800 20 0 10 chr1 104841766 104841865 -92353567 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 6 1384 1157 64 0 0 chr1 104841867 104842007 -92353425 - B1_Mus2 SINE Alu -6 141 2 6 1384 375 309 166 69 chr1 104842410 104842657 -92352775 + B4A SINE B4 7 277 -15 6 1384 2042 264 25 23 chr1 104842981 104843540 -92351892 - RLTR20B2 LTR ERVK 0 560 1 6 1384 8945 205 40 22 chr1 104843543 104845766 -92349666 - MYSERV16_I-int LTR ERVK -5 2837 1 6 1384 255 233 0 91 chr1 104845838 104845937 -92349495 - MYSERV16_I-int LTR ERVK -1626 1216 1127 6 1384 506 57 0 14 chr1 104846084 104846155 -92349277 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1384 297 149 12 7 chr1 104846536 104846626 -92348806 + Lx3A LINE L1 6902 7008 -1 6 1384 714 267 111 5 chr1 104847441 104847648 -92347784 - MTEb LTR MaLR -13 366 138 6 1384 1242 338 2 17 chr1 104848887 104849290 -92346142 - RMER1A Other Other -592 438 42 6 1384 1073 265 90 37 chr1 104849272 104849648 -92345784 - RMER1B Other Other -616 450 55 6 1384 239 349 0 0 chr1 104850180 104850243 -92345189 + MTD LTR MaLR 284 346 -73 6 1384 230 158 0 0 chr1 104851006 104851044 -92344388 + MusHAL1 LINE L1 789 826 -1886 6 1384 6966 124 18 5 chr1 104851035 104852617 -92342815 - L1_Mus3 LINE L1 -2 6636 5033 6 1384 640 320 53 22 chr1 104853327 104853739 -92341693 - L1MA4 LINE L1 -389 5911 5487 6 1384 880 283 55 14 chr1 104853934 104854296 -92341136 + MTEa LTR MaLR 1 377 -2 6 1384 435 211 10 100 chr1 104855159 104855259 -92340173 - B4 SINE B4 -200 92 2 6 1384 26 50 0 0 chr1 104856163 104856203 -92339229 + AT_rich Low_complexity Low_complexity 1 40 0 6 1384 1463 274 63 5 chr1 104856361 104856776 -92338656 - Lx7 LINE L1 -328 7368 6930 6 1384 819 260 6 1 chr1 104856809 104857032 -92338400 - L1_Mur3 LINE L1 -269 5611 5408 6 1384 2715 130 22 13 chr1 104857035 104857494 -92337938 - Lx LINE L1 0 6654 6192 6 1385 435 19 0 0 chr1 104858238 104858290 -92337142 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1385 245 234 291 24 chr1 104859395 104859522 -92335910 - RLTR21 LTR ERVK -333 1239 1079 6 1385 36226 39 9 7 chr1 104859566 104864987 -92330445 + L1Md_T LINE L1 154 5586 -297 6 1385 8088 42 7 0 chr1 104864988 104865976 -92329456 + L1Md_T LINE L1 5588 6582 0 6 1385 24 53 0 0 chr1 104865976 104866014 -92329418 + AT_rich Low_complexity Low_complexity 1 38 0 6 1385 834 284 144 31 chr1 104866453 104866601 -92328831 + ORR1D2 LTR MaLR 1 157 -213 6 1385 1037 87 0 6 chr1 104866601 104866774 -92328658 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 1385 834 284 144 31 chr1 104866774 104866945 -92328487 + ORR1D2 LTR MaLR 158 355 -15 6 1385 1491 223 10 94 chr1 104866944 104867359 -92328073 - RLTR31A_Mm LTR ERVK -204 380 1 6 1385 239 253 94 24 chr1 104867364 104867449 -92327983 - MLT1A1 LTR MaLR -312 96 6 6 1385 195 270 51 63 chr1 104867954 104868033 -92327399 + MIRm SINE MIR 110 187 -89 6 1385 210 91 0 0 chr1 104868496 104868529 -92326903 + (CTG)n Simple_repeat Simple_repeat 2 34 0 6 1385 228 273 36 0 chr1 104868530 104868585 -92326847 - ID4_ SINE ID -1 82 26 6 1385 605 305 121 25 chr1 104868706 104868945 -92326487 - B4 SINE B4 -21 271 10 6 1385 285 29 0 0 chr1 104868965 104868999 -92326433 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 1385 23 0 0 0 chr1 104869317 104869340 -92326092 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 618 359 30 19 chr1 104869471 104869735 -92325697 + B4A SINE B4 3 269 -23 6 1385 666 338 51 116 chr1 104869726 104870158 -92325274 - MTD LTR MaLR -15 404 1 6 1385 285 215 215 0 chr1 104870216 104870360 -92325072 - RLTR21 LTR ERVK -318 1254 1080 6 1385 231 306 63 0 chr1 104870715 104870826 -92324606 + MER2 DNA MER2_type 65 182 -163 6 1385 189 0 0 0 chr1 104871567 104871588 -92323844 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1385 586 83 44 29 chr1 104872098 104872234 -92323198 + (TCTCTG)n Simple_repeat Simple_repeat 2 139 0 6 1385 387 0 0 0 chr1 104872237 104872280 -92323152 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1385 441 390 14 34 chr1 104872562 104872602 -92322830 + B4A SINE B4 17 56 -236 6 1385 2798 52 0 3 chr1 104872602 104872946 -92322486 + IAPLTR4 LTR ERVK 3 345 0 6 1385 441 390 14 34 chr1 104872946 104873112 -92322320 + B4A SINE B4 57 219 -73 6 1385 371 343 7 7 chr1 104873140 104873275 -92322157 + B3 SINE B2 82 216 0 6 1385 378 0 0 0 chr1 104873388 104873430 -92322002 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1385 280 227 0 15 chr1 104874232 104874299 -92321133 - L1MA7 LINE L1 -47 6244 6179 6 1385 243 88 0 0 chr1 104874308 104874342 -92321090 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1385 14002 111 12 14 chr1 104874362 104877292 -92318140 - L1_Mus1 LINE L1 0 6567 3642 6 1385 562 366 35 57 chr1 104877292 104877608 -92317824 - MLT2B3 LTR ERVL -245 309 1 6 1385 294 349 15 63 chr1 104877627 104877832 -92317600 - LTR37B LTR ERV1 -255 213 19 6 1385 357 338 31 76 chr1 104878036 104878260 -92317172 - RMER15 LTR ERVL -17 558 345 6 1385 189 0 0 0 chr1 104878794 104878815 -92316617 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1385 190 95 23 23 chr1 104879663 104879706 -92315726 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1385 519 265 58 32 chr1 104880157 104880313 -92315119 + ID_B1 SINE B4 58 217 -7 6 1385 216 130 125 42 chr1 104880273 104880321 -92315111 + PB1D7 SINE Alu 68 119 -1 6 1385 280 203 0 51 chr1 104881186 104881264 -92314168 + CT-rich Low_complexity Low_complexity 1 74 0 6 1385 438 265 10 0 chr1 104881278 104881376 -92314056 - PB1D7 SINE Alu -7 113 15 6 1385 1434 45 0 0 chr1 104881819 104881997 -92313435 + (GA)n Simple_repeat Simple_repeat 1 178 0 6 1385 382 315 68 27 chr1 104882392 104882539 -92312893 - B4 SINE B4 -139 153 1 6 1385 409 370 91 28 chr1 104882826 104883079 -92312353 - B4A SINE B4 -12 280 12 6 1385 195 42 0 0 chr1 104883294 104883318 -92312114 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 6 1385 1190 333 49 87 chr1 104883739 104884842 -92310590 - Lx8 LINE L1 -23 7450 6390 6 1385 2035 203 100 29 chr1 104884842 104885334 -92310098 - RLTR11A2 LTR ERVK 0 527 1 6 1385 1190 333 49 87 chr1 104885334 104885355 -92310077 - Lx8 LINE L1 -1084 6389 6369 6 1385 410 318 17 71 chr1 104885389 104885629 -92309803 - Lx8 LINE L1 -1124 6349 6123 6 1385 414 39 0 0 chr1 104885725 104885777 -92309655 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1385 1085 48 7 0 chr1 104886302 104886447 -92308985 + L1Md_A LINE L1 6436 6581 -1 6 1385 594 0 0 0 chr1 104886514 104886580 -92308852 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1385 268 272 12 24 chr1 104887042 104887125 -92308307 + B4 SINE B4 6 87 -205 6 1385 283 303 0 13 chr1 104888223 104888300 -92307132 - RLTR17 LTR ERVK -22 670 595 6 1385 1251 175 111 40 chr1 104888306 104888657 -92306775 + RMER3D-int LTR ERVK 2462 2837 -5 6 1385 2870 189 20 7 chr1 104888662 104889207 -92306225 + RLTR17 LTR ERVK 1 552 -140 6 1385 473 191 29 29 chr1 104889228 104889368 -92306064 - L1_Mus3 LINE L1 -2 6636 6497 6 1385 237 103 0 0 chr1 104889335 104889374 -92306058 - L1_Mus2 LINE L1 -344 6222 6184 6 1385 636 231 13 52 chr1 104889374 104889529 -92305903 + RLTR17 LTR ERVK 544 692 0 6 1385 3527 194 14 6 chr1 104890112 104890894 -92304538 + L1_Mm LINE L1 4327 5114 -769 6 1385 30139 88 4 6 chr1 104890894 104896051 -92299381 + L1Md_F2 LINE L1 487 5586 -297 6 1385 7877 53 2 0 chr1 104896051 104897031 -92298401 + L1Md_F2 LINE L1 5587 6568 -14 6 1385 490 208 113 13 chr1 104897042 104897193 -92298239 + L1_Mur2 LINE L1 5092 5257 -620 6 1385 33121 53 0 5 chr1 104897196 104902678 -92292754 + L1Md_T LINE L1 39 5589 -297 6 1385 8469 33 0 1 chr1 104902678 104903675 -92291757 + L1Md_T LINE L1 5590 6585 0 6 1385 6112 174 15 5 chr1 104903677 104904156 -92291276 + Lx LINE L1 5252 5737 -146 6 1385 255 31 0 0 chr1 104904156 104904188 -92291244 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1385 6112 144 15 7 chr1 104904188 104905100 -92290332 + Lx LINE L1 5738 6651 -3 6 1385 213 293 0 24 chr1 104905101 104905185 -92290247 + A-rich Low_complexity Low_complexity 4 85 0 6 1385 381 383 9 0 chr1 104905189 104905304 -92290128 + B4A SINE B4 91 206 -86 6 1385 12677 114 36 5 chr1 104905315 104906874 -92288558 + L1Md_F LINE L1 367 1974 -3909 6 1385 270 0 0 0 chr1 104906874 104906904 -92288528 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1385 12677 85 0 7 chr1 104906904 104908008 -92287424 + L1Md_F LINE L1 1975 3073 -2810 6 1385 3326 112 29 6 chr1 104908013 104908533 -92286899 + L1Md_F2 LINE L1 6051 6582 0 6 1385 485 148 41 34 chr1 104908667 104908814 -92286618 + GA-rich Low_complexity Low_complexity 4 151 0 6 1385 375 362 73 66 chr1 104909041 104909328 -92286104 - B4A SINE B4 0 292 4 6 1385 261 0 0 0 chr1 104909355 104909384 -92286048 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1385 234 0 0 0 chr1 104909385 104909411 -92286021 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1385 344 361 16 8 chr1 104909985 104910108 -92285324 - RSINE1 SINE B4 -31 134 11 6 1385 378 0 0 0 chr1 104910148 104910190 -92285242 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1385 504 0 0 0 chr1 104910190 104910246 -92285186 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1385 206 146 20 40 chr1 104910646 104910696 -92284736 + T-rich Low_complexity Low_complexity 6 54 0 6 1385 238 303 15 0 chr1 104910880 104910946 -92284486 - B1F SINE Alu -80 69 3 6 1385 13970 185 37 52 chr1 104911264 104915334 -92280098 + L1_Mus4 LINE L1 688 4698 -1185 6 1385 5916 123 38 40 chr1 104915338 104916295 -92279137 + RLTR13C1 LTR ERVK 1 955 -28 6 1385 6009 157 17 92 chr1 104916295 104916827 -92278605 + L1_Mus4 LINE L1 4712 5230 -1406 6 1385 485 165 0 127 chr1 104916827 104916945 -92278487 + MT2B LTR ERVL 155 257 -344 6 1385 1064 98 0 0 chr1 104916842 104916985 -92278447 + B1_Mus1 SINE Alu 1 143 -5 6 1385 6009 157 17 92 chr1 104916985 104918421 -92277011 + L1_Mus4 LINE L1 5231 6635 -1 6 1385 1228 169 61 8 chr1 104918426 104918689 -92276743 + MurERV4-int LTR ERVK 4607 4883 -377 7 1385 2379 121 5 10 chr1 104919302 104919694 -92275738 - L1_Mm LINE L1 -666 5217 4828 7 1385 3430 112 6 4 chr1 104919694 104920196 -92275236 + L1_Mus1 LINE L1 6065 6567 0 7 1385 359 367 23 8 chr1 104920207 104920336 -92275096 - MER5A DNA MER1_type -16 173 43 7 1385 182 33 67 0 chr1 104920686 104920716 -92274716 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 7 1385 22 0 0 0 chr1 104920853 104920875 -92274557 + AT_rich Low_complexity Low_complexity 1 22 0 7 1385 609 318 60 28 chr1 104921315 104921567 -92273865 - B4 SINE B4 -28 264 5 7 1385 316 271 0 103 chr1 104922248 104922404 -92273028 + L1VL1 LINE L1 253 392 -6030 7 1385 6947 48 6 3 chr1 104922511 104923364 -92272068 + RLTR13A LTR ERVK 1 855 0 7 1385 443 252 16 8 chr1 104923396 104923524 -92271908 + L1_Mus1 LINE L1 675 803 -5813 7 1385 24455 130 15 19 chr1 104923532 104928241 -92267191 + L1_Mus1 LINE L1 725 5402 -481 7 1385 2987 38 0 8 chr1 104928242 104928612 -92266820 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1385 53411 22 14 1 chr1 104928612 104935000 -92260432 + IAPEz-int LTR ERVK 8 6481 0 7 1385 2987 38 0 8 chr1 104935000 104935370 -92260062 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1385 6473 104 18 0 chr1 104935370 104936519 -92258913 + L1_Mus1 LINE L1 5398 6567 0 7 1385 218 246 0 0 chr1 104937049 104937106 -92258326 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1385 630 325 58 46 chr1 104937387 104937648 -92257784 + B4 SINE B4 7 270 -22 7 1385 6540 79 8 4 chr1 104938469 104939399 -92256033 - L1Md_F2 LINE L1 0 6582 5650 7 1385 3015 76 5 2 chr1 104939417 104939812 -92255620 + MTA_Mm LTR MaLR 1 396 0 7 1385 287 217 310 37 chr1 104940862 104941017 -92254415 - MTE2b LTR MaLR -4 375 182 7 1385 404 351 97 51 chr1 104941205 104941442 -92253990 + B4 SINE B4 1 248 -44 7 1385 207 100 0 0 chr1 104941809 104941839 -92253593 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1385 447 19 0 0 chr1 104941910 104941962 -92253470 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1385 2007 246 102 51 chr1 104941962 104942598 -92252834 - MTC-int LTR MaLR -586 672 1 7 1385 182 105 0 26 chr1 104942641 104942680 -92252752 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 7 1385 301 167 0 62 chr1 104942683 104942747 -92252685 - MTC LTR MaLR -28 393 334 7 1385 312 360 50 0 chr1 104942976 104943115 -92252317 - MER115 DNA Tip100 -31 662 517 7 1385 213 39 0 0 chr1 104943192 104943218 -92252214 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1385 243 264 224 0 chr1 104943349 104943474 -92251958 - RMER15 LTR ERVL -16 559 407 7 1385 182 191 21 21 chr1 104944635 104944683 -92250749 + L4 LINE RTE 1683 1730 -299 7 1385 384 22 0 0 chr1 104944772 104944817 -92250615 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1385 777 22 0 0 chr1 104945861 104945952 -92249480 + (TG)n Simple_repeat Simple_repeat 2 92 0 7 1385 317 133 17 0 chr1 104946300 104946360 -92249072 - RMER1B Other Other -18 1048 988 7 1385 801 41 0 0 chr1 104946361 104946458 -92248974 - LTRIS2 LTR ERV1 -467 97 1 7 1385 949 215 28 0 chr1 104946459 104946673 -92248759 - MuRRS4-int LTR ERV1 -42 5021 4802 7 1385 351 0 0 0 chr1 104947489 104947528 -92247904 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1385 379 0 39 0 chr1 104947528 104947579 -92247853 + (CCA)n Simple_repeat Simple_repeat 1 53 0 7 1385 277 264 94 47 chr1 104947657 104947784 -92247648 + Lx6 LINE L1 7105 7237 -223 7 1385 189 0 0 0 chr1 104948028 104948049 -92247383 + (TTG)n Simple_repeat Simple_repeat 2 22 0 7 1385 1130 216 144 0 chr1 104948372 104948678 -92246754 - Lx9 LINE L1 -2 7642 7293 7 1385 484 330 49 16 chr1 104948707 104948892 -92246540 + ID_B1 SINE B4 2 192 -32 7 1385 391 308 0 27 chr1 104948932 104949042 -92246390 + B4A SINE B4 126 232 -60 7 1385 41 21 0 0 chr1 104949081 104949129 -92246303 + AT_rich Low_complexity Low_complexity 1 48 0 7 1385 2452 118 38 17 chr1 104949172 104949495 -92245937 - L1_Mm LINE L1 -1349 4534 4210 7 1385 453 116 0 0 chr1 104949495 104949564 -92245868 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1385 351 0 0 0 chr1 104949564 104949602 -92245830 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1385 2452 118 38 17 chr1 104949602 104949699 -92245733 - L1_Mm LINE L1 -1674 4209 4107 7 1385 6165 115 71 11 chr1 104949707 104951045 -92244387 + L1_Mus3 LINE L1 5216 6638 0 7 1385 737 314 54 11 chr1 104951136 104951416 -92244016 - B4A SINE B4 0 292 1 7 1385 232 351 68 68 chr1 104951674 104951851 -92243581 + MLT1B LTR MaLR 195 371 -19 7 1385 613 389 42 0 chr1 104951927 104952187 -92243245 + B4A SINE B4 16 286 -6 7 1385 311 348 106 14 chr1 104953080 104953287 -92242145 + RMER15 LTR ERVL 338 563 -12 7 1385 213 121 0 0 chr1 104953338 104953371 -92242061 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1385 565 246 0 21 chr1 104953582 104953727 -92241705 + RLTR22_Mur LTR ERVK 1590 1731 -117 7 1385 249 250 0 35 chr1 104955012 104955070 -92240362 + MTE2b LTR MaLR 8 63 -316 7 1385 207 0 0 0 chr1 104955816 104955839 -92239593 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1385 243 0 0 0 chr1 104955914 104955941 -92239491 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1385 606 39 0 0 chr1 104956411 104956488 -92238944 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1385 288 381 93 0 chr1 104956627 104956745 -92238687 - B4A SINE B4 -86 206 78 7 1385 2405 120 32 2 chr1 104957151 104957533 -92237899 - L1_Mus3 LINE L1 -36 6602 6236 7 1385 318 311 60 96 chr1 104957734 104957901 -92237531 - RSINE1 SINE B4 0 165 5 7 1385 200 277 11 0 chr1 104958184 104958278 -92237154 + A-rich Low_complexity Low_complexity 4 98 0 7 1385 806 169 12 0 chr1 104958268 104958428 -92237004 + GA-rich Low_complexity Low_complexity 3 164 0 7 1385 696 12 0 0 chr1 104959307 104959388 -92236044 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 1385 238 420 18 0 chr1 104959412 104959524 -92235908 - RSINE1 SINE B4 -4 161 48 7 1385 422 382 39 26 chr1 104959547 104959778 -92235654 - B4A SINE B4 -58 234 1 7 1385 1738 28 0 5 chr1 104959908 104960122 -92235310 + L1Md_F3 LINE L1 6372 6584 0 7 1385 1088 224 61 122 chr1 104960773 104961165 -92234267 + ORR1D1 LTR MaLR 6 373 -1 7 1385 372 366 7 37 chr1 104961289 104961425 -92234007 - RSINE1 SINE B4 -31 134 3 7 1385 30 0 0 0 chr1 104961427 104961457 -92233975 + AT_rich Low_complexity Low_complexity 1 30 0 7 1385 680 224 75 33 chr1 104961468 104961680 -92233752 + RCHARR1 DNA MER1_type 554 774 -200 7 1385 812 254 86 35 chr1 104961886 104962143 -92233289 - MTE2b LTR MaLR -5 374 105 7 1385 316 276 29 43 chr1 104962287 104962427 -92233005 - MLT1B LTR MaLR -65 325 188 7 1385 722 278 99 40 chr1 104962425 104962810 -92232622 + MT2A LTR ERVL 63 601 0 7 1385 227 352 42 0 chr1 104962999 104963070 -92232362 - B1F2 SINE Alu -70 79 6 7 1385 651 323 31 122 chr1 104963363 104963649 -92231783 + B4 SINE B4 15 274 -18 7 1385 4468 190 31 31 chr1 104963756 104964664 -92230768 - RMER13B LTR ERVK 0 908 1 7 1385 946 289 73 56 chr1 104965849 104965928 -92229504 - MTEa LTR MaLR -1 378 296 7 1385 306 50 0 0 chr1 104965928 104965968 -92229464 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 7 1385 946 289 73 56 chr1 104965968 104966243 -92229189 - MTEa LTR MaLR -84 295 18 7 1385 240 216 13 39 chr1 104967219 104967296 -92228136 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 7 1385 374 356 127 32 chr1 104967308 104967560 -92227872 - B4A SINE B4 -6 286 11 7 1385 447 107 0 0 chr1 104968152 104968227 -92227205 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1385 21 0 0 0 chr1 104968660 104968681 -92226751 + AT_rich Low_complexity Low_complexity 1 21 0 7 1385 2381 80 0 0 chr1 104968770 104969081 -92226351 - L1Md_F2 LINE L1 -405 6177 5867 7 1385 3086 83 0 7 chr1 104969081 104969507 -92225925 + L1Md_F2 LINE L1 6160 6582 0 7 1385 1131 49 21 0 chr1 104969508 104969652 -92225780 + B1_Mus2 SINE Alu 1 147 0 7 1385 269 171 0 38 chr1 104969654 104969733 -92225699 + A-rich Low_complexity Low_complexity 1 76 0 7 1385 259 208 61 61 chr1 104969820 104969902 -92225530 - MER34 LTR ERV1 -70 472 391 7 1385 263 252 169 40 chr1 104970615 104970739 -92224693 - LTR48 LTR ERV1 -640 147 8 7 1385 366 338 168 6 chr1 104971889 104972050 -92223382 + B4A SINE B4 102 288 -4 7 1385 423 0 0 0 chr1 104972060 104972107 -92223325 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1385 522 0 0 0 chr1 104972111 104972169 -92223263 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 7 1385 444 67 0 0 chr1 104972994 104973054 -92222378 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1385 201 143 30 45 chr1 104973055 104973121 -92222311 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 7 1385 489 187 18 24 chr1 104973573 104973685 -92221747 + MTD LTR MaLR 266 419 0 7 1385 220 350 39 29 chr1 104973742 104973845 -92221587 - B3 SINE B2 -79 137 34 7 1385 451 16 15 31 chr1 104973852 104973917 -92221515 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 7 1385 421 219 9 0 chr1 104973917 104974025 -92221407 - Lx4A LINE L1 -19 7039 6931 7 1385 4817 143 91 0 chr1 104974053 104974893 -92220539 - Lx2 LINE L1 -1 6996 6081 7 1385 914 205 18 0 chr1 104974899 104975065 -92220367 - Lx4A LINE L1 -133 6925 6757 7 1385 295 267 11 162 chr1 104975313 104975492 -92219940 - RMER15 LTR ERVL -419 156 5 7 1385 306 0 0 0 chr1 104975494 104975528 -92219904 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 7 1385 962 152 6 0 chr1 104975528 104975705 -92219727 + CT-rich Low_complexity Low_complexity 3 180 0 7 1385 381 43 0 0 chr1 104975709 104975756 -92219676 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 7 1385 9141 139 1 5 chr1 104975760 104977251 -92218181 - L1_Mm LINE L1 -670 5213 3729 7 1385 255 31 0 0 chr1 104978000 104978032 -92217400 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1385 419 356 26 5 chr1 104978037 104978226 -92217206 - Lx9 LINE L1 -917 6727 6535 7 1385 369 0 0 0 chr1 104978403 104978444 -92216988 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1385 21536 188 20 22 chr1 104979375 104984893 -92210539 - Lx LINE L1 -596 6058 552 8 1385 3071 140 0 36 chr1 104985350 104985367 -92210065 - Lx3A LINE L1 0 6981 6967 8 1385 207 0 0 0 chr1 104985367 104985390 -92210042 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 8 1385 3071 140 0 36 chr1 104985390 104985898 -92209534 - Lx3A LINE L1 -15 6966 6475 8 1385 1426 134 39 0 chr1 104985899 104986130 -92209302 + Lx3_Mus LINE L1 6275 6514 -495 8 1385 246 333 43 55 chr1 104986314 104986540 -92208892 - RSINE1 SINE B4 0 224 3 8 1385 21 0 0 0 chr1 104986547 104986568 -92208864 + AT_rich Low_complexity Low_complexity 1 21 0 8 1385 234 374 0 0 chr1 104987209 104987292 -92208140 + B4 SINE B4 2 84 -208 8 1385 426 357 51 23 chr1 104987318 104987493 -92207939 + B3A SINE B2 1 180 -18 8 1385 311 363 79 9 chr1 104987530 104987644 -92207788 - B3A SINE B2 -38 160 39 8 1385 324 0 0 0 chr1 104987664 104987700 -92207732 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1385 2576 105 120 27 chr1 104987755 104988196 -92207236 + RLTR45 LTR ERVK 1 482 0 8 173 1282 271 26 40 chr1 104988349 104988726 -92206706 - MTEb LTR MaLR -7 372 1 8 1386 367 307 123 45 chr1 104989537 104989806 -92205626 + RMER20B LTR ERVK 6 295 -332 8 1386 466 314 73 58 chr1 104990197 104990433 -92204999 + MTE2a LTR MaLR 141 379 0 8 1386 855 86 6 32 chr1 104991068 104991225 -92204207 + (TCTCCC)n Simple_repeat Simple_repeat 5 157 0 8 1386 3020 204 16 109 chr1 104991453 104992284 -92203148 - RLTR13C2 LTR ERVK -55 753 1 8 1386 1954 216 83 17 chr1 104992284 104992750 -92202682 + RMER17B LTR ERVK 462 958 0 8 1386 570 318 37 79 chr1 104992801 104993016 -92202416 - ID_B1 SINE B4 -13 211 6 8 1386 285 313 0 0 chr1 104993328 104993411 -92202021 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1386 368 394 52 5 chr1 104993430 104993624 -92201808 - B4 SINE B4 -87 205 3 8 1386 25 0 0 0 chr1 104996695 104996720 -92198712 + AT_rich Low_complexity Low_complexity 1 25 0 8 1386 464 338 89 0 chr1 104996720 104996877 -92198555 - ID_B1 SINE B4 -53 171 1 8 1386 209 77 0 49 chr1 104997248 104997289 -92198143 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 8 1386 225 310 58 29 chr1 104997576 104997679 -92197753 - MLT1A0 LTR MaLR -255 110 5 8 1386 221 286 16 0 chr1 104997741 104997804 -92197628 + CT-rich Low_complexity Low_complexity 3 66 0 8 1386 529 0 0 0 chr1 104998037 104998100 -92197332 + RLTR1D LTR ERV1 1 63 -542 8 1386 2203 80 3 0 chr1 104998101 104998400 -92197032 - L1Md_F2 LINE L1 -837 5046 4747 8 1386 4213 85 0 0 chr1 104998399 104998961 -92196471 + L1Md_F2 LINE L1 5024 5585 -298 8 1386 8073 41 1 9 chr1 104998962 104999966 -92195466 + L1Md_F2 LINE L1 5587 6582 0 8 1386 239 59 0 0 chr1 104999966 105000000 -92195432 + RLTR1D LTR ERV1 52 85 -520 8 1386 210 105 0 0 chr1 105000009 105000047 -92195385 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1386 2504 131 0 8 chr1 105000051 105000452 -92194980 + RLTR1C LTR ERV1 98 495 -8 2 1386 924 111 0 0 chr1 105000707 105000851 -92194581 + (TCC)n Simple_repeat Simple_repeat 3 146 0 3 1386 217 191 0 0 chr1 105000852 105000888 -92194544 + polypyrimidine Low_complexity Low_complexity 13 48 0 4 1386 348 64 0 0 chr1 105000888 105000935 -92194497 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1386 230 300 52 52 chr1 105001044 105001160 -92194272 - RLTR14 LTR ERV1 -46 336 221 6 1386 763 296 51 0 chr1 105001425 105001621 -92193811 - B4A SINE B4 -84 208 3 7 1386 636 300 0 36 chr1 105003824 105003990 -92191442 + ORR1E LTR MaLR 1 160 -199 8 1386 4207 85 0 2 chr1 105004003 105004560 -92190872 - L1_Mus1 LINE L1 -1 6566 6011 9 1386 814 252 53 30 chr1 105004574 105004873 -92190559 + L1Md_F LINE L1 125 430 -6089 1 1386 550 260 93 21 chr1 105004873 105005107 -92190325 + MTEb LTR MaLR 109 375 -4 1 1386 22 35 0 0 chr1 105005482 105005511 -92189921 + AT_rich Low_complexity Low_complexity 1 29 0 1 1386 521 74 53 0 chr1 105005697 105005792 -92189640 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1 1386 799 243 96 90 chr1 105006581 105006947 -92188485 - RLTR9A LTR ERVK 0 368 1 1 1386 1279 214 33 4 chr1 105007501 105007773 -92187659 - RLTR28 LTR ERVL -2 522 243 1 1386 39417 7 0 1 chr1 105007782 105014564 -92180868 - L1Md_A LINE L1 0 6582 1 1 1386 490 209 9 9 chr1 105014564 105014670 -92180762 - RLTR28 LTR ERVL -262 262 157 1 1386 593 264 20 13 chr1 105015802 105015952 -92179480 - RLTR28 LTR ERVL -320 161 11 1 1386 1311 179 17 4 chr1 105015960 105016201 -92179231 - RMER15 LTR ERVL -58 517 274 1 1386 919 242 72 36 chr1 105016291 105016540 -92178892 - RMER15 LTR ERVL -314 261 4 1 1386 2003 232 27 41 chr1 105017220 105017706 -92177726 - RLTR11A LTR ERVK -34 494 16 1 1386 706 229 85 0 chr1 105017745 105017968 -92177464 - MYSERV-int LTR ERVK -60 6490 6249 1 1386 336 243 0 37 chr1 105018127 105018234 -92177198 + (TCTCTG)n Simple_repeat Simple_repeat 2 104 0 2 1386 23 0 0 0 chr1 105018276 105018299 -92177133 + AT_rich Low_complexity Low_complexity 1 23 0 2 1386 214 394 9 28 chr1 105018667 105018774 -92176658 - B4A SINE B4 -148 144 40 2 1386 26 93 0 0 chr1 105018786 105018861 -92176571 + AT_rich Low_complexity Low_complexity 1 75 0 2 1386 233 203 17 17 chr1 105018959 105019019 -92176413 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 1386 388 197 0 0 chr1 105019047 105019123 -92176309 - Lx9 LINE L1 -187 7457 7382 2 1386 761 301 180 17 chr1 105019524 105019886 -92175546 - MTC LTR MaLR 0 421 1 2 1386 376 307 173 0 chr1 105020053 105020232 -92175200 - B3 SINE B2 -5 211 2 2 1386 4186 84 41 0 chr1 105020267 105020847 -92174585 + L1Md_F2 LINE L1 5976 6579 -3 2 1386 220 357 10 58 chr1 105021273 105021377 -92174055 + B1_Mm SINE Alu 5 103 -44 2 1386 510 320 44 20 chr1 105021866 105022070 -92173362 + ID_B1 SINE B4 14 222 -2 3 1386 271 286 0 0 chr1 105022261 105022317 -92173115 + RSINE1 SINE B4 3 58 -107 3 1386 467 379 29 0 chr1 105022385 105022559 -92172873 - B4A SINE B4 -113 179 1 3 1386 290 255 46 46 chr1 105022873 105023026 -92172406 - RMER17C LTR ERVK 0 410 224 3 1386 225 0 0 0 chr1 105023026 105023051 -92172381 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1386 438 20 0 0 chr1 105023051 105023101 -92172331 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1386 231 311 32 32 chr1 105023101 105023145 -92172287 - RMER17C LTR ERVK -187 223 182 3 1386 354 23 0 0 chr1 105023277 105023320 -92172112 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1386 350 295 62 9 chr1 105023509 105023622 -92171810 + ID_B1 SINE B4 32 150 -74 3 1386 325 0 44 0 chr1 105023649 105023694 -92171738 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1386 194 122 0 68 chr1 105023708 105023752 -92171680 + GA-rich Low_complexity Low_complexity 2 42 0 3 1386 392 208 10 0 chr1 105023768 105023864 -92171568 + (TGGA)n Simple_repeat Simple_repeat 1 97 0 4 1386 592 347 31 18 chr1 105025996 105026219 -92169213 + B4A SINE B4 7 232 -60 4 1386 227 103 0 25 chr1 105026299 105026339 -92169093 + (CATA)n Simple_repeat Simple_repeat 4 42 0 4 1386 347 308 64 22 chr1 105027290 105027463 -92167969 + RLTR19 LTR ERVK 336 506 0 4 1386 4072 278 85 15 chr1 105027546 105028988 -92166444 - Lx6 LINE L1 -26 7434 5892 4 1386 202 365 39 23 chr1 105029116 105029245 -92166187 + MIRb SINE MIR 77 207 -61 4 1386 934 235 13 13 chr1 105029889 105030113 -92165319 - URR1A DNA MER1_type -1 225 2 4 1386 520 345 22 55 chr1 105030280 105030553 -92164879 - RMER15 LTR ERVL -37 538 275 4 1386 752 173 7 0 chr1 105030729 105030879 -92164553 + CT-rich Low_complexity Low_complexity 3 153 0 4 1386 755 288 50 28 chr1 105032151 105032369 -92163063 - B4A SINE B4 -68 224 2 4 1386 21 57 0 0 chr1 105032415 105032450 -92162982 + AT_rich Low_complexity Low_complexity 1 35 0 5 1386 6686 88 4 22 chr1 105032781 105033776 -92161656 - L1_Mus2 LINE L1 -2 6564 5588 5 1386 446 48 0 16 chr1 105033782 105033846 -92161586 - L1_Mus2 LINE L1 -19 6547 6485 5 1386 2950 68 2 0 chr1 105033847 105034242 -92161190 + L1_Mus1 LINE L1 5955 6350 -217 5 1386 422 63 0 31 chr1 105034247 105034302 -92161130 + B1_Mm SINE Alu 84 138 -9 5 1386 284 0 28 0 chr1 105034302 105034338 -92161094 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1386 712 147 0 0 chr1 105034352 105034461 -92160971 + L1_Mus1 LINE L1 6356 6464 -103 5 1386 21 0 0 0 chr1 105034871 105034892 -92160540 + AT_rich Low_complexity Low_complexity 1 21 0 5 1386 223 356 0 0 chr1 105035447 105035520 -92159912 + B4 SINE B4 6 78 -214 5 1386 1298 94 3 3 chr1 105035521 105035832 -92159600 + (GAAA)n Simple_repeat Simple_repeat 1 311 0 5 1386 664 280 21 0 chr1 105035846 105035989 -92159443 + B4 SINE B4 81 226 -66 5 1386 315 104 0 0 chr1 105036045 105036093 -92159339 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1386 342 61 0 0 chr1 105036093 105036142 -92159290 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1386 480 132 0 0 chr1 105037278 105037361 -92158071 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1386 1146 274 32 39 chr1 105037572 105037883 -92157549 - MTD LTR MaLR -98 321 13 6 1386 840 294 85 18 chr1 105037895 105038176 -92157256 + MTE2b LTR MaLR 76 375 -4 6 1386 842 268 7 0 chr1 105039169 105039457 -92155975 + CT-rich Low_complexity Low_complexity 1 290 0 6 1386 292 301 9 114 chr1 105039457 105039562 -92155870 - PB1D10 SINE Alu 0 117 24 6 1386 512 306 175 12 chr1 105040835 105041162 -92154270 - MTD LTR MaLR -16 403 24 6 1386 268 361 33 3 chr1 105042945 105043068 -92152364 + PB1D10 SINE Alu 2 127 -22 6 1386 504 0 0 0 chr1 105043138 105043194 -92152238 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1386 214 333 91 45 chr1 105043304 105043436 -92151996 + B4 SINE B4 1 138 -154 6 1386 330 314 36 78 chr1 105043457 105043573 -92151859 + B4A SINE B4 127 241 -51 6 1386 3437 50 28 7 chr1 105043573 105044000 -92151432 + RLTR10C LTR ERVK 1 436 0 7 1386 330 314 36 78 chr1 105044000 105044049 -92151383 + B4A SINE B4 242 285 -7 6 1386 34923 34 11 11 chr1 105044370 105046020 -92149412 - L1Md_T LINE L1 0 6582 4914 7 1386 228 183 46 77 chr1 105046020 105046085 -92149347 + RMER20A LTR ERVK 186 248 -268 7 1386 34923 34 11 11 chr1 105046085 105049750 -92145682 - L1Md_T LINE L1 0 4913 1203 7 1386 9638 12 2 0 chr1 105049716 105050995 -92144437 - L1Md_Gf LINE L1 -5380 1142 1 7 1386 3364 40 2 0 chr1 105051492 105051887 -92143545 + MTA_Mm LTR MaLR 1 396 0 7 1386 9094 41 0 1 chr1 105051887 105052986 -92142446 + MTA_Mm-int LTR MaLR 1 1098 0 7 1386 3447 30 2 0 chr1 105052986 105053381 -92142051 + MTA_Mm LTR MaLR 1 396 0 7 1386 923 217 40 10 chr1 105053478 105053678 -92141754 - URR1A DNA MER1_type -20 206 1 7 1386 907 186 11 0 chr1 105053683 105053871 -92141561 - L1_Mur2 LINE L1 -720 5157 4968 7 1386 6557 60 1 0 chr1 105053871 105054698 -92140734 - L1Md_F2 LINE L1 0 6582 5755 7 1386 7373 54 1 0 chr1 105054698 105055650 -92139782 + L1Md_F2 LINE L1 4804 5756 -127 7 1386 4963 180 13 38 chr1 105055638 105056784 -92138648 - L1_Mur2 LINE L1 -897 4980 3864 7 1386 2867 231 41 6 chr1 105056850 105057534 -92137898 + Lx5 LINE L1 6340 7047 -3 7 1386 269 230 125 11 chr1 105057816 105057904 -92137528 - MLT2B2 LTR ERVL 0 562 465 7 1386 9896 112 28 6 chr1 105057924 105059560 -92135872 - L1_Mus3 LINE L1 -627 5256 3585 8 1386 6296 115 26 3 chr1 105059557 105060901 -92134531 + L1_Mus3 LINE L1 5263 6637 -1 8 1386 476 360 21 11 chr1 105060921 105061109 -92134323 - MT2A LTR ERVL -114 419 230 8 1386 411 348 6 43 chr1 105061938 105061952 -92133480 - RSINE1 SINE B4 -6 159 146 8 1386 195 42 0 0 chr1 105061952 105061976 -92133456 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 8 1386 411 348 6 43 chr1 105061976 105062123 -92133309 - RSINE1 SINE B4 -20 145 4 8 1386 212 203 15 15 chr1 105062708 105062773 -92132659 + (CAAA)n Simple_repeat Simple_repeat 3 67 0 8 1386 501 31 0 0 chr1 105062822 105062886 -92132546 - L1Md_F3 LINE L1 -497 6087 6024 8 1386 3797 45 2 21 chr1 105062886 105063398 -92132034 + L1Md_F3 LINE L1 6097 6584 0 8 1386 448 379 26 7 chr1 105063399 105063553 -92131879 + B4A SINE B4 50 206 -86 8 1386 180 0 0 0 chr1 105063640 105063660 -92131772 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1386 304 303 0 50 chr1 105063915 105063928 -92131504 + B4A SINE B4 217 227 -65 8 1386 447 19 0 0 chr1 105063928 105063980 -92131452 + (TAAAA)n Simple_repeat Simple_repeat 2 53 0 8 1386 304 303 0 50 chr1 105063980 105064046 -92131386 + B4A SINE B4 228 292 0 8 1386 1573 42 11 0 chr1 105064097 105064288 -92131144 + B2_Mm1a SINE B2 1 193 0 8 1386 192 40 0 0 chr1 105064288 105064313 -92131119 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 9 1386 207 0 0 0 chr1 105064348 105064371 -92131061 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1386 798 76 0 0 chr1 105065434 105065553 -92129879 + (TC)n Simple_repeat Simple_repeat 2 120 0 9 1386 297 0 0 0 chr1 105065580 105065613 -92129819 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1386 1251 272 40 47 chr1 105067669 105068055 -92127377 + MTE2b LTR MaLR 19 405 -14 9 1386 4867 94 17 9 chr1 105070316 105071005 -92124427 + RLTR13D5 LTR ERVK 1 695 -328 9 1386 1151 75 33 33 chr1 105071006 105071186 -92124246 + L1_Mus1 LINE L1 6387 6566 -1 9 1386 609 40 0 0 chr1 105072325 105072401 -92123031 + (TG)n Simple_repeat Simple_repeat 2 77 0 9 1386 439 350 14 7 chr1 105072401 105072542 -92122890 + B4A SINE B4 27 168 -124 9 1386 468 336 8 8 chr1 105072626 105072755 -92122677 + B4A SINE B4 146 274 -18 9 1386 252 111 0 0 chr1 105072807 105072852 -92122580 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 9 1386 21 57 0 0 chr1 105073522 105073557 -92121875 + AT_rich Low_complexity Low_complexity 1 35 0 1 1386 2570 44 2 233 chr1 105074634 105075136 -92120296 + RLTR10 LTR ERVK 1 386 -4 1 1386 15019 32 4 44 chr1 105075151 105077179 -92118253 + RLTR10-int LTR ERVK 40 1986 -1 1 1386 2540 47 2 233 chr1 105077179 105077681 -92117751 + RLTR10 LTR ERVK 1 386 -4 1 1386 210 299 16 146 chr1 105078182 105078355 -92117077 + B4A SINE B4 80 227 -65 1 1386 1122 234 149 5 chr1 105078355 105078742 -92116690 - RMER17B LTR ERVK -1 957 472 1 1386 1068 291 55 23 chr1 105079736 105080081 -92115351 + ORR1E LTR MaLR 1 356 -3 1 1386 5720 98 92 1 chr1 105080322 105081244 -92114188 + L1_Mus3 LINE L1 5633 6638 0 1 1386 3000 50 0 0 chr1 105081814 105082171 -92113261 - IAPEY2_LTR LTR ERVK 0 357 1 1 1386 3007 78 2 2 chr1 105082343 105082739 -92112693 + MTA_Mm LTR MaLR 1 396 0 1 1386 2033 110 14 8 chr1 105083441 105083792 -92111640 - L1M2c LINE L1 -1990 2566 2155 1 1386 678 284 95 25 chr1 105083967 105084209 -92111223 - MTEa LTR MaLR -4 375 117 1 1386 298 389 45 15 chr1 105084250 105084383 -92111049 + B3A SINE B2 30 166 -32 1 1386 7731 45 6 6 chr1 105085355 105086865 -92108567 - L1Md_F3 LINE L1 0 6584 5074 1 1386 496 298 100 12 chr1 105086991 105087151 -92108281 + B3A SINE B2 9 182 -16 1 1386 249 353 87 33 chr1 105087994 105088269 -92107163 + B4A SINE B4 3 292 0 1 1386 195 42 0 0 chr1 105088348 105088372 -92107060 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1386 233 267 106 0 chr1 105088608 105088678 -92106754 + ID4_ SINE ID 2 83 0 1 1386 520 362 70 11 chr1 105088863 105089134 -92106298 - B4A SINE B4 0 292 6 1 1386 381 62 46 0 chr1 105089280 105089345 -92106087 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1386 477 0 0 0 chr1 105090999 105091052 -92104380 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1386 270 0 0 0 chr1 105091200 105091230 -92104202 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1386 609 133 16 16 chr1 105091414 105091536 -92103896 + CT-rich Low_complexity Low_complexity 2 123 0 1 1386 800 315 30 65 chr1 105092007 105092377 -92103055 - ORR1E LTR MaLR -2 357 1 1 1386 287 283 34 14 chr1 105092929 105093076 -92102356 - L1M1 LINE L1 -489 5811 5662 1 1386 372 77 0 0 chr1 105093314 105093366 -92102066 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1386 378 356 37 100 chr1 105093392 105093692 -92101740 - B4A SINE B4 -6 286 6 1 1386 252 0 0 0 chr1 105094509 105094537 -92100895 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1386 366 316 11 17 chr1 105094675 105094855 -92100577 + GA-rich Low_complexity Low_complexity 2 180 0 1 1386 348 83 0 0 chr1 105094882 105094930 -92100502 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1386 680 331 47 27 chr1 105094930 105095184 -92100248 - B4A SINE B4 -24 268 9 1 1386 3026 89 70 15 chr1 105095238 105095750 -92099682 + L1Md_F2 LINE L1 6100 6582 0 1 1386 558 139 37 0 chr1 105096068 105096176 -92099256 + L1_Mus2 LINE L1 6416 6527 -39 1 1386 2011 79 4 0 chr1 105096177 105096443 -92098989 + L1_Mus1 LINE L1 6300 6566 -1 1 1386 357 123 0 0 chr1 105096533 105096598 -92098834 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1386 483 118 0 0 chr1 105096650 105096726 -92098706 + (TATG)n Simple_repeat Simple_repeat 4 79 0 1 1386 585 319 64 35 chr1 105096737 105097020 -92098412 - B4A SINE B4 0 292 2 1 1386 414 0 0 0 chr1 105097895 105097941 -92097491 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1386 224 212 35 12 chr1 105098022 105098108 -92097324 + T-rich Low_complexity Low_complexity 2 89 0 1 1386 510 321 75 66 chr1 105098112 105098339 -92097093 - B4 SINE B4 -63 229 1 1 1386 237 65 0 0 chr1 105098406 105098437 -92096995 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 1386 499 291 7 15 chr1 105098556 105098692 -92096740 - B4 SINE B4 -127 165 31 1 1386 225 0 0 0 chr1 105099056 105099081 -92096351 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1386 673 327 16 105 chr1 105099784 105100098 -92095334 + B4A SINE B4 7 292 0 1 1386 231 362 0 0 chr1 105100042 105100111 -92095321 + B3A SINE B2 115 183 -15 1 1386 490 279 91 45 chr1 105100425 105100624 -92094808 - B3 SINE B2 0 216 9 1 1386 485 408 0 25 chr1 105101051 105101247 -92094185 - B3A SINE B2 -6 192 2 1 1386 2403 59 100 0 chr1 105101345 105101686 -92093746 - RLTR10 LTR ERVK -15 375 1 1 1386 475 0 0 0 chr1 105101686 105101742 -92093690 - RLTR10-int LTR ERVK -1 1986 1931 1 1386 3121 22 0 13 chr1 105101742 105102114 -92093318 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1386 53132 21 17 2 chr1 105102114 105108495 -92086937 - IAPEz-int LTR ERVK 0 6481 8 1 1386 3147 19 0 13 chr1 105108495 105108867 -92086565 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1386 7329 52 1 3 chr1 105108867 105109816 -92085616 - RLTR10-int LTR ERVK -51 1936 990 1 1386 464 316 12 12 chr1 105109898 105110151 -92085281 - RLTR10-int LTR ERVK -5987 1594 1342 1 1386 6649 68 31 0 chr1 105110344 105111267 -92084165 - RLTR10-int LTR ERVK -995 992 41 1 1386 2692 54 96 0 chr1 105111279 105111633 -92083799 - RLTR10 LTR ERVK -2 388 1 1 1386 222 384 7 0 chr1 105112352 105112503 -92082929 + (TG)n Simple_repeat Simple_repeat 2 153 0 1 1386 281 339 6 23 chr1 105112550 105112725 -92082707 + (TATG)n Simple_repeat Simple_repeat 4 175 0 1 1386 914 283 63 70 chr1 105112726 105113011 -92082421 - B4 SINE B4 0 292 10 1 1386 475 335 64 5 chr1 105113020 105113239 -92082193 - MLT2C1 LTR ERVL -232 232 1 1 1386 487 368 86 21 chr1 105113490 105113723 -92081709 + B4A SINE B4 1 248 -44 1 1386 1945 67 55 28 chr1 105113866 105114156 -92081276 - L1_Mus1 LINE L1 -1 6566 6269 1 1386 730 309 65 11 chr1 105114495 105114770 -92080662 + MTEb LTR MaLR 84 373 -6 1 1386 1873 146 26 55 chr1 105114900 105115283 -92080149 + Lx LINE L1 6273 6644 -10 1 1386 413 337 31 103 chr1 105115523 105115626 -92079806 + B4 SINE B4 106 211 -81 1 1386 4622 71 0 2 chr1 105115626 105116216 -92079216 - L1_Mus1 LINE L1 0 6567 5979 1 1386 413 337 31 103 chr1 105116216 105116307 -92079125 + B4 SINE B4 212 286 -6 1 1386 468 62 0 0 chr1 105116372 105116436 -92078996 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1386 429 36 0 0 chr1 105116938 105116993 -92078439 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1386 294 374 39 16 chr1 105117672 105117854 -92077578 + MTE2a LTR MaLR 1 186 -233 1 1386 1169 239 87 38 chr1 105117854 105118275 -92077157 - RMER16 LTR ERVK 0 533 1 1 1386 424 282 162 10 chr1 105118276 105118473 -92076959 + MTE2a LTR MaLR 153 379 0 1 1386 1015 183 70 0 chr1 105118783 105118996 -92076436 - Lx2 LINE L1 0 6997 6770 1 1386 3495 176 25 12 chr1 105118990 105119710 -92075722 - Lx2 LINE L1 -352 6645 5917 1 173 328 164 27 14 chr1 105119724 105119798 -92075634 - L1_Mm LINE L1 -362 5521 5447 1 1387 9795 41 1 5 chr1 105119795 105120808 -92074624 - L1Md_F2 LINE L1 -12 6570 5573 1 1387 3702 49 2 17 chr1 105120808 105121289 -92074143 - L1Md_F2 LINE L1 0 6582 6109 1 1387 9795 161 48 88 chr1 105121289 105122320 -92073112 - L1Md_F2 LINE L1 -311 5572 4679 1 1387 189 74 0 0 chr1 105122320 105122347 -92073085 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1387 9795 161 48 88 chr1 105122347 105123558 -92071874 - L1Md_F2 LINE L1 -1205 4678 3420 1 1387 6856 130 15 8 chr1 105123578 105125352 -92070080 - L1VL4 LINE L1 -1371 2188 401 1 1387 541 347 32 14 chr1 105125624 105125840 -92069592 + B4 SINE B4 4 223 -69 1 1387 393 75 0 0 chr1 105125840 105125893 -92069539 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1387 214 106 21 21 chr1 105125914 105125962 -92069470 + (TAAAG)n Simple_repeat Simple_repeat 2 49 0 1 1387 958 132 14 0 chr1 105126459 105126603 -92068829 - B1_Mus1 SINE Alu -2 146 1 1 1387 834 294 40 69 chr1 105127067 105127427 -92068005 - MTE2a LTR MaLR -70 349 1 1 1387 215 156 44 0 chr1 105128659 105128704 -92066728 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1387 664 253 286 3 chr1 105129714 105130032 -92065400 + MTC LTR MaLR 1 408 -11 1 1387 261 182 0 0 chr1 105130034 105130089 -92065343 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1387 342 45 0 0 chr1 105130089 105130133 -92065299 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1387 2008 219 37 65 chr1 105130222 105130849 -92064583 + RMER12 LTR ERVK 390 1384 -188 1 1387 1197 227 142 44 chr1 105130900 105131380 -92064052 - RMER17C-int LTR ERVK -2705 533 7 1 1387 1410 181 67 75 chr1 105131386 105131826 -92063606 - RMER17C LTR ERVK -517 441 16 1 1387 336 289 22 0 chr1 105131837 105131927 -92063505 + MTEa LTR MaLR 284 375 -4 1 1387 540 265 107 12 chr1 105132974 105133142 -92062290 - RMER1B Other Other -5 1061 878 1 1387 182 0 0 95 chr1 105133149 105133191 -92062241 + (GTTTG)n Simple_repeat Simple_repeat 1 38 0 1 1387 601 329 31 0 chr1 105133691 105133852 -92061580 + B4 SINE B4 11 176 -116 1 1387 2150 178 10 3 chr1 105133864 105134252 -92061180 + Lx LINE L1 6004 6394 -260 1 1387 2676 137 6 38 chr1 105134273 105134750 -92060682 - RLTR31B_Mm LTR ERVK -88 469 8 1 1387 1516 158 15 11 chr1 105134750 105135018 -92060414 + Lx LINE L1 6386 6654 0 1 1387 429 20 0 0 chr1 105135065 105135115 -92060317 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1387 324 255 0 0 chr1 105135398 105135500 -92059932 + GA-rich Low_complexity Low_complexity 4 105 0 1 1387 855 146 0 25 chr1 105135513 105135751 -92059681 + GA-rich Low_complexity Low_complexity 1 232 0 1 1387 526 317 37 6 chr1 105135785 105135947 -92059485 + MTE2a LTR MaLR 20 186 -233 1 1387 1384 234 174 0 chr1 105135947 105136298 -92059134 - MTD LTR MaLR 0 419 8 1 1387 207 88 0 0 chr1 105136300 105136334 -92059098 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 1 1387 639 286 6 23 chr1 105136408 105136580 -92058852 + MTE2a LTR MaLR 207 375 -4 1 1387 291 85 0 0 chr1 105137165 105137212 -92058220 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1387 546 327 102 21 chr1 105137400 105137560 -92057872 - RMER5 LTR ERV1 -9 525 344 1 1387 1954 176 22 89 chr1 105137560 105138021 -92057411 + RLTR23 LTR ERV1 1 430 0 1 1387 546 327 102 21 chr1 105138021 105138144 -92057288 - RMER5 LTR ERV1 -191 343 220 1 1387 1291 174 180 96 chr1 105138153 105138508 -92056924 - RLTR41 LTR ERV1 0 446 62 1 1387 374 345 5 38 chr1 105138655 105138866 -92056566 - RNERVK23-int LTR ERVK -453 7764 7561 1 1387 334 333 28 48 chr1 105138866 105138901 -92056531 - MURVY-int LTR ERV1 -70 7379 7139 1 1387 2629 95 40 10 chr1 105139008 105139411 -92056021 - BGLII LTR ERVK -6 415 1 1 1387 1275 222 11 30 chr1 105140742 105140972 -92054460 - RLTR41 LTR ERV1 0 446 222 1 1387 3966 112 35 73 chr1 105140972 105141741 -92053691 + RMER17A LTR ERVK 1 740 -11 1 1387 360 59 0 0 chr1 105141746 105141797 -92053635 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1387 417 264 55 0 chr1 105141802 105141912 -92053520 - RLTR41 LTR ERV1 -199 247 132 2 1387 710 220 16 174 chr1 105141893 105142135 -92053297 - RLTR41 LTR ERV1 -240 206 3 2 1387 208 170 38 0 chr1 105142258 105142311 -92053121 + GA-rich Low_complexity Low_complexity 1 55 0 2 1387 1953 186 84 37 chr1 105143286 105143773 -92051659 - RLTR11A LTR ERVK 0 528 19 2 1387 282 291 0 0 chr1 105143812 105143891 -92051541 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1387 551 361 29 19 chr1 105144027 105144233 -92051199 + B4 SINE B4 10 217 -75 2 1387 771 284 59 0 chr1 105144307 105144512 -92050920 + MTE2a LTR MaLR 161 374 0 2 1387 651 355 20 67 chr1 105144807 105145106 -92050326 + B4A SINE B4 8 292 0 2 1387 330 26 0 0 chr1 105145152 105145191 -92050241 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 1387 510 292 86 23 chr1 105145629 105145804 -92049628 + ID_B1 SINE B4 11 196 -28 2 1387 243 271 68 0 chr1 105145796 105145855 -92049577 + RSINE1 SINE B4 5 67 -98 2 1387 862 146 22 0 chr1 105145955 105146092 -92049340 - B1_Mur4 SINE Alu -6 144 5 2 1387 373 290 67 39 chr1 105146102 105146310 -92049122 - B3 SINE B2 0 216 3 2 1387 462 320 34 20 chr1 105146626 105146830 -92048602 - ID_B1 SINE B4 -14 210 4 2 1387 398 278 84 39 chr1 105147558 105147940 -92047492 - L1M2 LINE L1 -2849 3294 2896 2 1387 26 0 0 0 chr1 105147948 105147974 -92047458 + AT_rich Low_complexity Low_complexity 1 26 0 2 1387 23 0 0 0 chr1 105147997 105148020 -92047412 + AT_rich Low_complexity Low_complexity 1 23 0 2 1387 323 295 45 83 chr1 105148064 105148197 -92047235 + B4 SINE B4 3 130 -162 2 1387 198 0 0 0 chr1 105148212 105148234 -92047198 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2 1387 255 61 0 0 chr1 105148234 105148267 -92047165 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1387 1155 68 7 0 chr1 105148414 105148560 -92046872 - B1_Mus2 SINE Alu 0 147 1 2 1387 746 293 60 42 chr1 105148887 105149172 -92046260 - B4 SINE B4 0 292 3 2 1387 1152 266 93 6 chr1 105149543 105149887 -92045545 - ORR1D1 LTR MaLR 0 374 1 2 1387 1571 251 104 11 chr1 105149887 105150358 -92045074 - ORR1D1-int LTR MaLR 0 1370 856 2 1387 1024 96 7 40 chr1 105150360 105150512 -92044920 + B1_Mus1 SINE Alu 2 148 0 2 1387 344 255 9 9 chr1 105150578 105150685 -92044747 - ORR1D1-int LTR MaLR -897 612 506 2 1387 1647 261 38 88 chr1 105150708 105150847 -92044585 - ORR1D1-int LTR MaLR -839 531 397 2 1387 3226 53 5 0 chr1 105150847 105151241 -92044191 - MTA_Mm LTR MaLR 0 396 1 2 1387 1647 261 38 88 chr1 105151241 105151660 -92043772 - ORR1D1-int LTR MaLR -974 396 1 2 1387 803 331 32 56 chr1 105151776 105152118 -92043314 - ORR1D1 LTR MaLR -15 364 31 2 1387 213 39 0 0 chr1 105152235 105152261 -92043171 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1387 1194 292 57 70 chr1 105152309 105152909 -92042523 - Lx6 LINE L1 -54 7406 6455 2 1387 756 74 25 0 chr1 105152970 105153091 -92042341 + (TCC)n Simple_repeat Simple_repeat 2 125 0 2 1387 375 23 0 0 chr1 105153091 105153135 -92042297 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1387 531 319 17 6 chr1 105153135 105153315 -92042117 - Lx6 LINE L1 -714 6746 6565 2 1387 311 109 0 0 chr1 105153313 105153359 -92042073 + Lx6 LINE L1 5673 5718 -1742 2 1387 4889 11 0 7 chr1 105153372 105153925 -92041507 - L1Md_T LINE L1 0 6582 6034 2 1387 396 210 0 58 chr1 105154259 105154345 -92041087 + MTC LTR MaLR 1 81 -340 2 1387 7121 106 15 5 chr1 105154539 105155560 -92039872 + RLTR13D4 LTR ERVK 3 1033 0 2 1387 185 303 27 108 chr1 105155921 105156032 -92039400 + MIR3 SINE MIR 104 205 -3 2 1387 292 273 130 70 chr1 105156223 105156408 -92039024 - B3A SINE B2 0 198 3 2 1387 887 276 67 47 chr1 105156941 105157283 -92038149 - MT2B LTR ERVL 0 601 253 2 1387 645 81 0 0 chr1 105157336 105157422 -92038010 + B1_Mus2 SINE Alu 50 135 -12 2 1387 762 32 0 0 chr1 105157425 105157518 -92037914 + (CAAAA)n Simple_repeat Simple_repeat 2 94 0 2 1387 635 331 58 21 chr1 105157519 105157710 -92037722 - B3A SINE B2 -16 200 3 2 1387 471 293 0 8 chr1 105157710 105157825 -92037607 - B4 SINE B4 -66 226 113 2 1387 242 196 0 0 chr1 105157825 105157871 -92037561 + L1_Mus3 LINE L1 5965 6010 -628 2 1387 512 267 56 25 chr1 105158032 105158228 -92037204 + MER2 DNA MER2_type 90 291 -54 2 1387 4732 146 5 1 chr1 105158249 105159020 -92036412 - L1_Mus4 LINE L1 -1 6635 5862 2 1387 5393 36 18 7 chr1 105159016 105159690 -92035742 - L1Md_F3 LINE L1 -1 6583 5903 2 1387 14955 180 36 23 chr1 105159695 105159867 -92035565 - L1VL4 LINE L1 -997 4886 4732 2 1387 441 0 0 0 chr1 105159867 105159916 -92035516 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 2 1387 14955 180 36 23 chr1 105159916 105160406 -92035026 - L1VL4 LINE L1 -1152 4731 4286 2 1387 387 0 0 0 chr1 105160406 105160449 -92034983 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1387 14955 180 36 23 chr1 105160449 105161233 -92034199 - L1VL4 LINE L1 -1598 4285 3481 2 1387 186 43 0 0 chr1 105161233 105161256 -92034176 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 2 1387 14955 108 39 50 chr1 105161256 105163353 -92032079 - L1VL4 LINE L1 -2403 3480 1386 2 1387 1051 97 14 0 chr1 105163353 105163498 -92031934 - B1_Mus1 SINE Alu 0 148 2 2 1387 13005 159 25 55 chr1 105163498 105164615 -92030817 - L1VL4 LINE L1 -2523 1391 357 2 1387 27 49 0 0 chr1 105164685 105164726 -92030706 + AT_rich Low_complexity Low_complexity 1 41 0 2 1387 947 242 212 43 chr1 105165216 105165565 -92029867 + MTD LTR MaLR 1 408 -11 2 1387 22 0 0 0 chr1 105166034 105166056 -92029376 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 632 348 9 29 chr1 105166064 105166274 -92029158 - ID_B1 SINE B4 -17 207 2 2 1387 406 348 8 0 chr1 105166615 105166733 -92028699 - B1_Mur2 SINE Alu -26 123 5 2 1387 4227 223 22 20 chr1 105166984 105167877 -92027555 + RMER13B LTR ERVK 1 895 -13 2 1387 807 207 5 40 chr1 105167890 105168091 -92027341 - Tigger15a DNA TcMar -40 675 482 2 1387 305 139 0 25 chr1 105168298 105168379 -92027053 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 2 1387 285 29 0 0 chr1 105168381 105168415 -92027017 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1387 303 298 91 82 chr1 105168558 105168766 -92026666 - L1M5 LINE L1 -400 5724 5515 2 1387 207 146 0 0 chr1 105169126 105169167 -92026265 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1387 2254 233 43 16 chr1 105169263 105169798 -92025634 - RMER19C LTR ERVK 0 611 1 2 1387 251 50 0 48 chr1 105170899 105170941 -92024491 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1387 526 328 64 40 chr1 105171236 105171487 -92023945 + RLTR20D LTR ERVK 31 287 -281 2 1387 244 259 0 0 chr1 105171473 105171527 -92023905 + RLTR20D LTR ERVK 423 476 -102 2 1387 306 148 0 0 chr1 105171527 105171581 -92023851 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1387 357 281 0 59 chr1 105171581 105171683 -92023749 + RLTR20D LTR ERVK 483 578 0 2 1387 29325 104 12 3 chr1 105171778 105173065 -92022367 - L1Md_F2 LINE L1 -14 6568 5234 2 1387 639 0 0 0 chr1 105173065 105173136 -92022296 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2 1387 29325 112 13 12 chr1 105173136 105178027 -92017405 - L1Md_F2 LINE L1 -650 5233 371 2 1387 249 33 0 0 chr1 105178482 105178512 -92016920 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1387 25 31 0 0 chr1 105179530 105179562 -92015870 + AT_rich Low_complexity Low_complexity 1 32 0 2 1387 216 0 0 0 chr1 105179609 105179633 -92015799 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1387 2406 92 113 3 chr1 105179640 105180019 -92015413 + BGLII LTR ERVK 1 421 0 2 1387 234 235 304 6 chr1 105180820 105180872 -92014560 + L1MA4 LINE L1 5349 5403 -900 2 1387 1719 52 17 29 chr1 105180872 105181110 -92014322 - L1Md_F3 LINE L1 -3 6581 6347 2 1387 234 235 304 6 chr1 105181110 105181228 -92014204 + L1MA4 LINE L1 5404 5570 -733 2 1387 374 238 28 28 chr1 105181374 105181482 -92013950 - RLTR21 LTR ERVK -155 1417 1310 2 1387 228 149 0 0 chr1 105181488 105181535 -92013897 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1387 4148 188 77 1 chr1 105181535 105181634 -92013798 - RMER12 LTR ERVK -425 897 798 2 1387 369 0 0 0 chr1 105181634 105181675 -92013757 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1387 4148 188 77 1 chr1 105181675 105182409 -92013023 - RMER12 LTR ERVK -525 797 2 2 1387 520 281 62 27 chr1 105182411 105182747 -92012685 + L1MA4 LINE L1 5567 5914 -386 2 1387 460 362 0 14 chr1 105183037 105183180 -92012252 + ID_B1 SINE B4 83 223 -1 2 1387 291 161 0 0 chr1 105183355 105183411 -92012021 + (CCA)n Simple_repeat Simple_repeat 1 56 0 2 1387 340 370 0 0 chr1 105184284 105184392 -92011040 + RSINE1 SINE B4 5 112 -53 2 1387 323 187 22 0 chr1 105184405 105184496 -92010936 + CT-rich Low_complexity Low_complexity 5 97 0 2 1387 953 82 30 0 chr1 105184940 105185075 -92010357 - L1_Mus2 LINE L1 0 6566 6428 2 1387 516 301 40 27 chr1 105185464 105185614 -92009818 - ETnERV2-int LTR ERVK -185 7221 7070 2 1387 483 303 122 16 chr1 105185705 105185893 -92009539 - ID_B1 SINE B4 0 224 17 2 1387 202 324 25 76 chr1 105186858 105187015 -92008417 + L2a LINE L2 3277 3425 -1 2 1387 21 0 0 0 chr1 105187546 105187567 -92007865 + AT_rich Low_complexity Low_complexity 1 21 0 2 1387 8556 10 0 0 chr1 105187852 105188946 -92006486 - L1Md_T LINE L1 0 6582 5489 2 1387 11679 22 0 0 chr1 105188941 105190370 -92005062 + L1Md_T LINE L1 4079 5507 -376 2 1387 571 333 27 80 chr1 105190381 105190606 -92004826 - MTEa LTR MaLR -166 213 1 2 1387 3412 239 26 58 chr1 105190622 105191569 -92003863 + Lx7 LINE L1 6089 7005 -691 2 1387 1114 241 87 0 chr1 105191569 105191834 -92003598 - ORR1B2 LTR MaLR 0 367 80 2 1387 2686 227 26 2 chr1 105191892 105192465 -92002967 - ORR1B2-int LTR MaLR 0 1509 923 2 1387 418 311 54 91 chr1 105192829 105193070 -92002362 - RLTR26 LTR ERVK -241 401 170 2 1387 298 257 40 0 chr1 105193162 105193236 -92002196 - ORR1B2-int LTR MaLR -922 587 511 2 1387 3565 181 32 8 chr1 105193238 105194048 -92001384 - L1VL4 LINE L1 -2521 1038 213 2 1387 967 219 29 104 chr1 105194161 105194574 -92000858 - RMER3D-int LTR ERVK -1464 1378 997 2 1387 319 155 54 40 chr1 105194634 105194708 -92000724 - RMER3D-int LTR ERVK -1731 1111 1037 2 1387 414 0 0 0 chr1 105194743 105194789 -92000643 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 2 1387 376 291 41 61 chr1 105194906 105195151 -92000281 - RMER3D-int LTR ERVK -2483 359 120 2 1387 851 109 7 0 chr1 105195688 105195835 -91999597 + (TC)n Simple_repeat Simple_repeat 1 148 0 2 1387 282 29 0 0 chr1 105195835 105195869 -91999563 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1387 442 196 28 47 chr1 105195877 105195984 -91999448 - RLTR16 LTR ERVK -378 127 23 2 1387 353 232 30 20 chr1 105196477 105196578 -91998854 - Tigger7 DNA MER2_type -92 2399 2298 2 1387 378 317 81 0 chr1 105196611 105196734 -91998698 - Tigger7 DNA MER2_type -2290 201 69 2 1387 265 196 89 0 chr1 105196745 105196801 -91998631 - MTD LTR MaLR -10 409 349 2 1387 992 216 112 66 chr1 105197303 105197695 -91997737 - RMER17C LTR ERVK 0 410 1 2 1387 1655 166 107 9 chr1 105197699 105198027 -91997405 - RMER17C-int LTR ERVK -4 3234 2875 2 1387 342 173 0 0 chr1 105198035 105198110 -91997322 + (CATA)n Simple_repeat Simple_repeat 1 75 0 2 1387 1720 164 50 39 chr1 105198110 105198492 -91996940 - RMER17C-int LTR ERVK -339 2899 2514 2 1387 477 214 9 37 chr1 105198486 105198593 -91996839 - RMER17C-int LTR ERVK -3044 194 91 2 1387 1545 195 11 77 chr1 105198669 105198696 -91996736 - RMER17C LTR ERVK 0 410 383 2 1387 1404 11 0 32 chr1 105198696 105198881 -91996551 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 1387 1545 195 11 77 chr1 105198881 105199292 -91996140 - RMER17C LTR ERVK -28 382 1 2 1387 413 328 0 25 chr1 105200050 105200172 -91995260 + B3A SINE B2 2 120 -78 3 1387 1267 262 89 17 chr1 105200217 105200566 -91994866 - MTEb LTR MaLR -5 374 1 3 1387 331 348 56 31 chr1 105201303 105201463 -91993969 + Tigger5 DNA MER2_type 49 212 -2194 3 1387 283 276 40 0 chr1 105201724 105201800 -91993632 + B4A SINE B4 2 80 -212 3 1387 1361 170 4 4 chr1 105202271 105202519 -91992913 + L1VL1 LINE L1 18 265 -6157 3 1387 25270 115 13 11 chr1 105202518 105207538 -91987894 + L1Md_F LINE L1 275 5302 -581 3 1387 29243 183 15 40 chr1 105207538 105208355 -91987077 + L1Md_F2 LINE L1 233 1249 -5475 3 1387 225 0 0 0 chr1 105208355 105208380 -91987052 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1387 29243 86 3 4 chr1 105208380 105212721 -91982711 + L1Md_F2 LINE L1 1250 5585 -298 3 1387 6749 94 25 2 chr1 105212722 105213683 -91981749 + L1Md_F2 LINE L1 5587 6569 -13 3 1387 1079 254 60 18 chr1 105213851 105214132 -91981300 - MTEa LTR MaLR -80 299 7 3 1387 2831 51 0 0 chr1 105214447 105214779 -91980653 - IAPEY3_LTR LTR ERVK 0 332 1 3 1387 56133 69 14 3 chr1 105214779 105222377 -91973055 - IAPEY3-int LTR ERVK 0 7680 1 3 1387 2559 49 9 0 chr1 105222382 105222706 -91972726 - IAPEY3_LTR LTR ERVK -5 327 1 3 1387 690 47 0 0 chr1 105222950 105223036 -91972396 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1387 258 183 118 0 chr1 105223310 105223403 -91972029 - Lx6 LINE L1 0 7460 7357 3 1387 267 31 0 0 chr1 105223498 105223530 -91971902 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1387 558 67 0 0 chr1 105223572 105223647 -91971785 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1387 630 0 0 0 chr1 105223984 105224054 -91971378 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1387 1502 323 26 13 chr1 105224352 105224810 -91970622 - MT2A LTR ERVL -69 464 1 3 1387 240 302 0 0 chr1 105224814 105224900 -91970532 - L1M2 LINE L1 -665 5647 5562 3 1387 1084 103 0 7 chr1 105226080 105226227 -91969205 + B1_Mus1 SINE Alu 2 147 -1 3 1387 388 375 0 0 chr1 105226543 105226663 -91968769 + RSINE1 SINE B4 2 121 -44 3 1387 219 276 0 0 chr1 105228332 105228430 -91967002 + GA-rich Low_complexity Low_complexity 3 100 0 3 1387 242 29 0 28 chr1 105229043 105229079 -91966353 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1387 243 0 0 0 chr1 105230123 105230150 -91965282 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1387 270 273 0 0 chr1 105231345 105231422 -91964010 + CT-rich Low_complexity Low_complexity 2 78 0 3 1387 303 93 0 0 chr1 105231476 105231519 -91963913 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1387 1679 113 0 15 chr1 105231522 105231792 -91963640 - L1Md_F2 LINE L1 -5 6577 6312 3 1387 386 127 0 0 chr1 105231793 105231848 -91963584 - L1Md_F2 LINE L1 -442 6140 6086 3 1387 300 331 86 34 chr1 105233429 105233604 -91961828 - MLT1A LTR MaLR 0 374 191 3 1387 708 266 20 85 chr1 105234755 105235002 -91960430 - RMER5 LTR ERV1 0 534 304 3 1387 477 0 0 0 chr1 105235226 105235279 -91960153 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 3 1387 1519 216 31 38 chr1 105235281 105235757 -91959675 - RLTR31_Mm LTR ERVK -31 530 5 3 1387 370 353 0 82 chr1 105235766 105235948 -91959484 + B4A SINE B4 8 174 -118 3 1387 333 62 0 0 chr1 105236687 105236735 -91958697 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1387 917 166 12 0 chr1 105236861 105237030 -91958402 + Lx2 LINE L1 6773 6943 -54 3 1387 647 335 79 20 chr1 105237617 105237958 -91957474 + MTEb LTR MaLR 18 378 -1 3 1387 292 333 0 69 chr1 105237988 105238104 -91957328 - MLT1E3 LTR MaLR -127 497 390 3 1387 1622 108 0 0 chr1 105238109 105238340 -91957092 - L1Md_F2 LINE L1 -12 6570 6340 3 1387 307 291 0 0 chr1 105238367 105238453 -91956979 + Lx7 LINE L1 6987 7072 -624 3 1387 251 322 58 0 chr1 105238469 105238556 -91956876 + Lx7 LINE L1 6431 6522 -1174 3 1387 638 316 8 23 chr1 105238574 105238815 -91956617 + Lx7 LINE L1 7072 7310 -386 3 1387 504 32 0 0 chr1 105238815 105238877 -91956555 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1387 638 316 8 23 chr1 105238877 105238891 -91956541 + Lx7 LINE L1 7311 7323 -373 3 1387 24 53 0 0 chr1 105239055 105239093 -91956339 + AT_rich Low_complexity Low_complexity 1 38 0 3 1387 396 232 138 42 chr1 105240422 105240611 -91954821 - Lx8 LINE L1 -10 7463 7257 3 1387 249 320 82 0 chr1 105240710 105240807 -91954625 - Lx7 LINE L1 -545 7151 7047 3 1387 26 50 0 0 chr1 105240851 105240891 -91954541 + AT_rich Low_complexity Low_complexity 1 40 0 3 1387 768 280 91 17 chr1 105240893 105241180 -91954252 + Lx8 LINE L1 6677 6984 -489 3 1387 296 390 62 40 chr1 105241212 105241388 -91954044 - B3 SINE B2 -28 188 9 3 1387 634 333 58 51 chr1 105241790 105242103 -91953329 + ORR1E LTR MaLR 4 318 -41 3 1387 302 338 192 64 chr1 105242183 105242433 -91952999 + B4A SINE B4 9 290 -2 3 1387 201 147 0 0 chr1 105242816 105242850 -91952582 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 3 1387 451 386 48 22 chr1 105243212 105243485 -91951947 + B4A SINE B4 13 292 0 3 1387 285 29 0 0 chr1 105243500 105243534 -91951898 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1387 274 328 51 34 chr1 105243587 105243764 -91951668 + B3A SINE B2 3 182 -16 3 1387 632 322 11 28 chr1 105244271 105244450 -91950982 - B4 SINE B4 -9 283 108 3 1387 678 181 177 173 chr1 105244714 105244968 -91950464 + RLTR23 LTR ERV1 1 255 -175 3 1387 2956 198 20 25 chr1 105244977 105245572 -91949860 - RLTR17 LTR ERVK 0 692 101 3 1387 1402 203 194 3 chr1 105245965 105246326 -91949106 - RLTR23 LTR ERV1 0 430 1 3 1387 1093 75 7 0 chr1 105246938 105247084 -91948348 + B1_Mus1 SINE Alu 2 148 0 3 1387 331 360 111 0 chr1 105249340 105249512 -91945920 + ORR1E LTR MaLR 15 205 -154 3 1387 452 314 63 84 chr1 105249706 105249983 -91945449 + ORR1E-int LTR MaLR 1259 1529 -51 3 1387 365 316 101 70 chr1 105249983 105250211 -91945221 + ORR1E LTR MaLR 3 237 -122 3 1387 416 320 80 0 chr1 105250304 105250429 -91945003 - MTEa LTR MaLR -227 152 18 3 1388 342 0 0 0 chr1 105251425 105251463 -91943969 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1388 333 346 30 55 chr1 105251552 105251717 -91943715 - B4A SINE B4 -63 161 1 3 1388 505 359 69 59 chr1 105252608 105252999 -91942433 - MTD LTR MaLR -7 412 18 3 1388 32 26 0 0 chr1 105253213 105253252 -91942180 + AT_rich Low_complexity Low_complexity 1 39 0 3 1388 707 95 8 16 chr1 105253252 105253380 -91942052 - L1_Mus4 LINE L1 -1 6635 6509 3 1388 559 255 20 54 chr1 105255039 105255188 -91940244 - B3A SINE B2 -16 182 39 3 1388 356 0 23 0 chr1 105255235 105255279 -91940153 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3 1388 3716 89 2 10 chr1 105255279 105255792 -91939640 - L1_Mus2 LINE L1 -11 6555 6047 3 1388 280 244 110 52 chr1 105255886 105256059 -91939373 - L1MA9 LINE L1 -239 6073 5891 3 1388 351 271 92 18 chr1 105256199 105256308 -91939124 - RSINE1 SINE B4 -6 159 43 3 1388 415 259 122 8 chr1 105256753 105257006 -91938426 - L1MA9 LINE L1 -1314 4826 4545 3 1388 387 329 80 95 chr1 105257006 105257246 -91938186 + B4A SINE B4 22 258 -34 3 1388 360 64 0 0 chr1 105257259 105257306 -91938126 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1388 201 232 0 0 chr1 105257414 105257509 -91937923 + A-rich Low_complexity Low_complexity 5 99 0 3 1388 434 359 46 25 chr1 105257509 105257706 -91937726 + B4A SINE B4 69 269 -23 3 1388 23 0 0 0 chr1 105258152 105258175 -91937257 + AT_rich Low_complexity Low_complexity 1 23 0 3 1388 339 25 0 0 chr1 105258567 105258607 -91936825 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1388 303 193 0 0 chr1 105258619 105258707 -91936725 + GA-rich Low_complexity Low_complexity 2 89 0 3 1388 21 82 0 0 chr1 105259755 105259804 -91935628 + AT_rich Low_complexity Low_complexity 1 49 0 3 1388 237 264 22 22 chr1 105260082 105260176 -91935256 + CT-rich Low_complexity Low_complexity 1 94 0 3 1388 429 284 10 0 chr1 105260177 105260279 -91935153 - PB1D10 SINE Alu 0 117 15 3 1388 257 293 48 12 chr1 105260832 105260915 -91934517 + MER5A DNA MER1_type 36 121 -68 3 1388 948 292 204 0 chr1 105261865 105262174 -91933258 - MTEa LTR MaLR -6 373 2 3 1388 1206 264 43 38 chr1 105262248 105262648 -91932784 - RMER15 LTR ERVL -2 573 46 3 1388 193 326 95 40 chr1 105263211 105263463 -91931969 + L2a LINE L2 2116 2381 -1038 3 1388 391 348 51 25 chr1 105263479 105263715 -91931717 + L2a LINE L2 3185 3426 0 3 1388 315 269 43 0 chr1 105263784 105263886 -91931546 - MTE2a LTR MaLR -14 405 279 3 1388 722 275 19 69 chr1 105264173 105264435 -91930997 + B4 SINE B4 15 263 -29 3 1388 22 70 0 0 chr1 105265560 105265603 -91929829 + AT_rich Low_complexity Low_complexity 1 43 0 3 1388 337 279 63 25 chr1 105265853 105266011 -91929421 - L1MEe LINE L1 -3788 1066 903 3 1388 358 344 64 89 chr1 105266080 105266316 -91929116 - B4 SINE B4 -15 277 48 3 1388 182 62 0 30 chr1 105267163 105267196 -91928236 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 3 1388 853 225 108 0 chr1 105267199 105267412 -91928020 - Lx3C LINE L1 -12 6964 6729 3 1388 4999 200 16 42 chr1 105267408 105268153 -91927279 - L1VL4 LINE L1 -1535 4351 3619 3 1388 762 99 0 0 chr1 105268153 105268274 -91927158 + L1Md_F2 LINE L1 6450 6570 -12 3 1388 4999 200 16 42 chr1 105268274 105268799 -91926633 - L1VL4 LINE L1 -2268 3618 3114 3 1388 5412 113 7 43 chr1 105268799 105269801 -91925631 + ETnERV2-int LTR ERVK 5495 6222 -1184 3 1388 474 107 0 13 chr1 105270016 105270092 -91925340 + ETnERV2-int LTR ERVK 7331 7405 -1 3 1388 2187 156 9 43 chr1 105270092 105270515 -91924917 + RLTR9E LTR ERVK 1 409 0 3 1388 959 221 10 59 chr1 105270515 105270829 -91924603 - L1VL4 LINE L1 -5887 1097 802 3 1388 183 80 0 0 chr1 105271595 105271620 -91923812 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1388 26 30 0 0 chr1 105272045 105272078 -91923354 + AT_rich Low_complexity Low_complexity 1 33 0 3 1388 3548 45 7 7 chr1 105272283 105272728 -91922704 + L1Md_F2 LINE L1 6138 6582 0 3 1388 708 240 97 20 chr1 105273726 105273922 -91921510 + URR1A DNA MER1_type 14 224 -2 3 1388 525 16 0 0 chr1 105274422 105274484 -91920948 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1388 513 0 0 0 chr1 105274484 105274541 -91920891 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1388 5893 92 22 20 chr1 105275121 105276020 -91919412 - L1Md_F LINE L1 -2543 3340 2440 3 1388 4699 25 0 0 chr1 105276016 105276712 -91918720 + L1Md_T LINE L1 5340 6035 -547 4 1388 7090 92 1 160 chr1 105276705 105277621 -91917811 - L1Md_F LINE L1 -3428 2455 1616 3 1388 1038 95 81 19 chr1 105277621 105277635 -91917797 - B2_Mm2 SINE B2 -23 172 161 4 1388 198 0 0 0 chr1 105277635 105277657 -91917775 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 4 1388 1038 95 81 19 chr1 105277657 105277803 -91917629 - B2_Mm2 SINE B2 -35 160 2 4 1388 7090 124 2 93 chr1 105277803 105278823 -91916609 - L1Md_F LINE L1 -4268 1615 614 3 1388 7825 97 14 0 chr1 105278821 105279981 -91915451 + L1Md_F2 LINE L1 1999 3174 -2709 4 1388 5119 119 9 10 chr1 105279958 105280764 -91914668 + L1Md_F2 LINE L1 4781 5585 -298 4 1388 6887 91 22 2 chr1 105280765 105281731 -91913701 + L1Md_F2 LINE L1 5587 6571 -11 4 1388 746 262 10 29 chr1 105282456 105282664 -91912768 - RMER10B LTR ERVL -1 397 194 4 1388 986 174 57 68 chr1 105282675 105282940 -91912492 - RMER10B LTR ERVL -134 264 3 4 1388 1274 103 145 6 chr1 105283107 105283325 -91912107 - L1_Mus2 LINE L1 -2 6582 6337 4 1388 357 108 62 9 chr1 105283720 105283832 -91911600 + A-rich Low_complexity Low_complexity 2 119 0 4 1388 1086 294 67 17 chr1 105283969 105284325 -91911107 + ORR1D1 LTR MaLR 1 374 0 4 1388 2198 196 69 54 chr1 105284333 105284852 -91910580 + RLTR11A2 LTR ERVK 1 527 0 4 1388 458 325 24 65 chr1 105285134 105285302 -91910130 - B4A SINE B4 0 292 132 4 1388 526 250 26 123 chr1 105285323 105285545 -91909887 + L1VL1 LINE L1 174 399 -6019 4 1388 266 73 24 0 chr1 105285598 105285639 -91909793 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1388 274 322 21 32 chr1 105285666 105285759 -91909673 - B4A SINE B4 -200 92 1 4 1388 1533 214 114 14 chr1 105285824 105286202 -91909230 - MTC LTR MaLR -13 408 1 4 1388 2113 262 59 38 chr1 105286215 105287319 -91908113 - MTC-int LTR MaLR -21 1237 13 4 1388 3564 99 12 16 chr1 105287340 105287852 -91907580 - L1_Mus1 LINE L1 0 6567 6058 4 1388 2492 71 6 0 chr1 105287858 105288184 -91907248 + L1_Mus1 LINE L1 5587 5914 -653 4 1388 541 305 42 6 chr1 105288203 105288371 -91907061 - MTC LTR MaLR -2 419 246 4 1388 3002 202 93 41 chr1 105288486 105288611 -91906821 + RLTR25B LTR ERVK 1 112 -916 4 1388 486 0 0 0 chr1 105288611 105288665 -91906767 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1388 3002 202 93 41 chr1 105288665 105289303 -91906129 + RLTR25B LTR ERVK 113 804 -224 4 1388 444 82 0 0 chr1 105289311 105289372 -91906060 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1388 591 15 0 0 chr1 105289372 105289439 -91905993 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 1388 685 288 54 31 chr1 105289524 105289782 -91905650 - B4 SINE B4 -27 265 2 4 1388 562 252 58 9 chr1 105290776 105290950 -91904482 + MTD LTR MaLR 196 411 -8 4 1388 254 312 51 66 chr1 105291037 105291174 -91904258 - RMER15 LTR ERVL -164 411 277 4 1388 474 319 84 89 chr1 105291918 105292121 -91903311 - B4A SINE B4 -38 254 53 4 1388 310 291 100 83 chr1 105292604 105292784 -91902648 + B3A SINE B2 1 183 -15 4 1388 189 74 0 0 chr1 105293366 105293393 -91902039 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1388 215 342 68 14 chr1 105293434 105293508 -91901924 - RSINE1 SINE B4 -69 96 19 4 1388 252 389 114 4 chr1 105294155 105294382 -91901050 + MLT1D LTR MaLR 245 496 -9 4 1388 350 298 33 3 chr1 105294491 105294603 -91900829 + B3A SINE B2 4 125 -68 4 1388 555 85 0 0 chr1 105294653 105294735 -91900697 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1388 189 74 0 0 chr1 105294739 105294766 -91900666 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1388 7539 84 5 2 chr1 105295108 105296321 -91899111 + L1_Mus1 LINE L1 5350 6563 -4 4 1388 773 325 68 85 chr1 105297422 105297581 -91897851 - MTE2b LTR MaLR -28 351 208 4 1388 200 35 35 0 chr1 105297581 105297610 -91897822 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1388 657 47 0 0 chr1 105297610 105297694 -91897738 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1388 773 325 68 85 chr1 105297694 105297886 -91897546 - MTE2b LTR MaLR -172 207 6 4 1388 34 65 0 32 chr1 105297949 105298044 -91897388 + AT_rich Low_complexity Low_complexity 1 92 0 4 1388 714 310 77 4 chr1 105298351 105298584 -91896848 + B4A SINE B4 1 250 -42 4 1388 7364 100 5 0 chr1 105298603 105300118 -91895314 + L1_Mus1 LINE L1 5046 6567 0 4 1388 40152 17 3 6 chr1 105300197 105306386 -91889046 - L1Md_A LINE L1 0 6582 422 4 1388 23 0 0 0 chr1 105306397 105306420 -91889012 + AT_rich Low_complexity Low_complexity 1 23 0 4 1388 966 50 21 0 chr1 105306869 105307010 -91888422 + (TCTA)n Simple_repeat Simple_repeat 3 146 0 4 1388 323 0 0 45 chr1 105307283 105307327 -91888105 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 4 1388 2146 155 2 43 chr1 105307341 105307739 -91887693 - Lx2 LINE L1 0 6997 6616 4 1388 1573 128 4 0 chr1 105307739 105307966 -91887466 + Lx2 LINE L1 6263 6490 -507 4 1388 1567 295 78 8 chr1 105308073 105308559 -91886873 - RMER15 LTR ERVL -18 557 38 4 1388 292 322 0 17 chr1 105309528 105309645 -91885787 + CT-rich Low_complexity Low_complexity 4 118 0 4 1388 37455 50 1 5 chr1 105309748 105316460 -91878972 - L1Md_T LINE L1 0 6585 1 4 1388 495 0 0 0 chr1 105316562 105316617 -91878815 + (TTC)n Simple_repeat Simple_repeat 3 57 0 4 1388 306 87 0 0 chr1 105316617 105316663 -91878769 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1388 392 224 0 0 chr1 105316740 105316816 -91878616 + ID_B1 SINE B4 148 223 -1 4 1388 261 118 0 0 chr1 105318704 105318755 -91876677 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1388 231 186 0 23 chr1 105319395 105319439 -91875993 - PB1D7 SINE Alu -1 119 77 4 1388 498 17 0 0 chr1 105319550 105319609 -91875823 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1388 213 39 0 0 chr1 105323105 105323131 -91872301 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1388 414 0 0 0 chr1 105324185 105324231 -91871201 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1388 425 321 35 47 chr1 105326798 105326968 -91868464 + ID_B1 SINE B4 56 223 -1 4 1388 10574 115 77 6 chr1 105327321 105327412 -91868020 - L1_Mur1 LINE L1 -318 5568 5478 4 1388 180 0 0 0 chr1 105327412 105327432 -91868000 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1388 10574 115 77 6 chr1 105327432 105328155 -91867277 - L1_Mur1 LINE L1 -409 5477 4642 4 1388 316 40 20 20 chr1 105328155 105328206 -91867226 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1388 10574 115 77 6 chr1 105328206 105329166 -91866266 - L1_Mur1 LINE L1 -1245 4641 3668 4 1388 7191 138 47 84 chr1 105329193 105329516 -91865916 + Lx3A LINE L1 5588 5909 -1072 4 1388 371 78 0 15 chr1 105329516 105329581 -91865851 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 1388 7191 138 47 84 chr1 105329581 105329812 -91865620 + Lx3A LINE L1 5910 6119 -862 4 1388 1114 76 7 0 chr1 105329812 105329957 -91865475 + B1_Mus1 SINE Alu 2 147 -1 4 1388 7191 138 47 84 chr1 105329957 105330837 -91864595 + Lx3A LINE L1 6120 6969 -12 4 1388 185 0 0 39 chr1 105330837 105330863 -91864569 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1388 381 43 0 0 chr1 105330864 105330911 -91864521 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1388 441 0 0 0 chr1 105330912 105330961 -91864471 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1388 1073 84 7 0 chr1 105331506 105331660 -91863772 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 4 1388 763 120 12 42 chr1 105331850 105332015 -91863417 + CT-rich Low_complexity Low_complexity 4 163 0 4 1388 180 77 0 0 chr1 105332017 105332043 -91863389 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1388 536 327 24 67 chr1 105332078 105332288 -91863144 - B4 SINE B4 -52 240 40 4 1388 485 171 95 0 chr1 105332406 105332511 -91862921 - URR1A DNA MER1_type -43 183 69 4 1388 239 286 81 32 chr1 105332511 105332528 -91862904 + CYRA11_Mm Unknown Y-chromosome 218 345 -272 4 1388 599 294 23 64 chr1 105332747 105332918 -91862514 + ID_B1 SINE B4 27 190 -34 4 1388 692 266 7 0 chr1 105333128 105333267 -91862165 - B1_Mur4 SINE Alu 0 150 11 4 1388 590 126 0 0 chr1 105333267 105333354 -91862078 + Lx2 LINE L1 5776 5862 -1135 4 1388 22 35 0 0 chr1 105333916 105333945 -91861487 + AT_rich Low_complexity Low_complexity 1 29 0 4 1388 335 354 22 13 chr1 105334115 105334411 -91861021 - L1MA4 LINE L1 -376 5924 5591 4 1388 1596 209 72 46 chr1 105334533 105334964 -91860468 + RMER10A LTR ERVL 1 442 0 4 1388 464 200 0 7 chr1 105335435 105335581 -91859851 + GA-rich Low_complexity Low_complexity 1 145 0 4 1388 309 300 25 51 chr1 105335783 105335941 -91859491 - Lx5 LINE L1 -388 6662 6509 4 1388 991 197 85 18 chr1 105336123 105336395 -91859037 + Lx5 LINE L1 5643 5912 -1138 4 1388 899 196 0 6 chr1 105336403 105336583 -91858849 - Lx5 LINE L1 -1086 5964 5786 4 1388 1113 180 43 8 chr1 105336612 105336849 -91858583 - Lx3B LINE L1 -2 6998 6746 4 1388 3056 148 2 0 chr1 105336839 105337311 -91858121 + Lx3B LINE L1 6301 6773 -200 4 1388 2032 237 61 2 chr1 105337309 105337816 -91857616 - L1_Mur2 LINE L1 -86 5791 5255 4 1388 4011 215 56 19 chr1 105337816 105338680 -91856752 + RMER13B LTR ERVK 1 896 -12 4 1388 717 167 0 0 chr1 105338687 105338813 -91856619 - L1_Mur2 LINE L1 -849 5028 4903 4 1388 2206 257 39 13 chr1 105338819 105339356 -91856076 - RLTR20B1 LTR ERVK 0 563 13 4 1388 2768 231 47 14 chr1 105339369 105340112 -91855320 - L1_Mur2 LINE L1 -979 4898 4131 4 1388 270 298 86 53 chr1 105340286 105340495 -91854937 - RLTR15 LTR ERVK -84 275 60 4 1388 426 163 53 21 chr1 105341310 105341404 -91854028 + RMER15 LTR ERVL 29 125 -450 4 1388 818 293 84 7 chr1 105341442 105341741 -91853691 + RMER15 LTR ERVL 249 570 -5 4 1388 507 355 39 17 chr1 105342586 105342818 -91852614 + B4A SINE B4 8 244 -48 4 1388 337 255 5 26 chr1 105342951 105343054 -91852378 + PB1D9 SINE Alu 32 127 -23 4 1388 226 307 13 0 chr1 105343057 105343132 -91852300 + GA-rich Low_complexity Low_complexity 2 77 0 4 1388 269 338 38 0 chr1 105343132 105343212 -91852220 - Cheshire DNA MER1_type -2330 90 8 4 1388 980 297 99 41 chr1 105343747 105344096 -91851336 - ORR1D2 LTR MaLR 0 370 6 4 1388 2734 21 61 9 chr1 105345229 105345558 -91849874 + ORR1A0 LTR MaLR 1 346 0 4 1388 2696 61 3 3 chr1 105345855 105346201 -91849231 + ORR1A1 LTR MaLR 1 346 0 4 1388 13712 64 4 3 chr1 105346201 105347991 -91847441 + ORR1A1-int LTR MaLR 1 1792 0 4 1388 2621 50 3 0 chr1 105347991 105348328 -91847104 + ORR1A1 LTR MaLR 1 338 -8 4 1388 849 214 39 0 chr1 105348379 105348557 -91846875 - RLTR42 LTR ERVK 0 239 55 4 1388 23 54 0 0 chr1 105348752 105348789 -91846643 + AT_rich Low_complexity Low_complexity 1 37 0 4 1388 1277 196 34 15 chr1 105348789 105349054 -91846378 - Lx4A LINE L1 -3 7055 6786 4 1388 10031 173 17 29 chr1 105349054 105351278 -91844154 - Lx4A LINE L1 -955 6103 3893 4 1388 947 124 7 7 chr1 105351402 105351548 -91843884 - B1_Mus1 SINE Alu -1 147 2 4 1388 375 23 0 0 chr1 105351799 105351843 -91843589 + (TTA)n Simple_repeat Simple_repeat 3 46 0 4 1388 1530 222 25 36 chr1 105351843 105352235 -91843197 - Lx3C LINE L1 -6 6970 6583 4 1388 3154 71 2 9 chr1 105352228 105352668 -91842764 - L1Md_F LINE L1 -1365 4518 4082 4 1388 3070 49 5 0 chr1 105352672 105353059 -91842373 - MTA_Mm LTR MaLR -7 389 1 5 1388 19405 115 16 10 chr1 105353062 105357152 -91838280 - L1Md_F LINE L1 -1803 4080 98 4 1388 15778 194 52 12 chr1 105357210 105359193 -91836239 - L1_Mur1 LINE L1 -666 5220 3153 5 1388 495 0 0 0 chr1 105359193 105359248 -91836184 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1388 15778 203 73 12 chr1 105359248 105361521 -91833911 - L1_Mur1 LINE L1 -2734 3152 743 5 1388 12956 166 15 32 chr1 105361765 105363637 -91831795 - Lx4A LINE L1 -1972 3905 2054 4 1388 483 63 0 0 chr1 105363637 105363700 -91831732 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1388 12956 166 15 32 chr1 105363700 105364293 -91831139 - Lx4A LINE L1 -3824 2053 1480 4 1388 300 27 0 0 chr1 105364293 105364330 -91831102 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1388 1095 66 15 0 chr1 105364330 105364467 -91830965 - B1_Mus1 SINE Alu -9 139 1 5 1388 12956 193 31 29 chr1 105364467 105365423 -91830009 - Lx4A LINE L1 -4398 1479 520 4 1388 973 327 34 25 chr1 105365979 105366427 -91829005 + Lx7 LINE L1 6863 7314 -382 5 1388 331 310 59 50 chr1 105366427 105366546 -91828886 - RMER15 LTR ERVL -157 418 299 5 1388 357 198 0 0 chr1 105367421 105367527 -91827905 + T-rich Low_complexity Low_complexity 1 106 0 5 1388 1816 172 31 43 chr1 105367949 105368363 -91827069 - RLTR9E LTR ERVK 0 409 1 5 1388 442 247 12 0 chr1 105368835 105368916 -91826516 - RSINE1 SINE B4 -46 119 38 5 1388 823 203 16 32 chr1 105369216 105369404 -91826028 - B2_Mm2 SINE B2 0 195 11 5 1388 385 343 22 0 chr1 105369850 105369984 -91825448 - B3A SINE B2 -61 137 1 5 1388 351 0 0 0 chr1 105370433 105370472 -91824960 + (CAA)n Simple_repeat Simple_repeat 3 41 0 5 1388 5373 202 58 19 chr1 105370919 105372283 -91823149 + L1_Mur2 LINE L1 3784 5200 -677 5 1388 1519 186 21 59 chr1 105372291 105372629 -91822803 - ORR1A4 LTR MaLR -4 325 1 5 1388 6816 204 58 85 chr1 105372629 105374148 -91821284 - ORR1A4-int LTR MaLR 0 1963 615 5 1388 2439 144 36 65 chr1 105374148 105374644 -91820788 + RLTR45 LTR ERVK 1 482 0 5 1388 6816 201 52 95 chr1 105374644 105374778 -91820654 - ORR1A4-int LTR MaLR -1349 614 471 5 1388 213 39 0 0 chr1 105374778 105374804 -91820628 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1388 1142 84 0 0 chr1 105374805 105374948 -91820484 - B1_Mus2 SINE Alu -4 143 1 5 1388 6816 201 52 95 chr1 105374948 105375404 -91820028 - ORR1A4-int LTR MaLR -1493 470 10 5 1388 2700 38 123 0 chr1 105375404 105375770 -91819662 + IAPLTR2a LTR ERVK 1 411 0 5 1388 510 114 16 132 chr1 105375771 105375892 -91819540 + IAPEz-int LTR ERVK 9 115 -6366 5 1388 6533 74 88 14 chr1 105375926 105376848 -91818584 + IAPEz-int LTR ERVK 711 1700 -4781 5 1388 6353 62 12 11 chr1 105376843 105377669 -91817763 + IAPEz-int LTR ERVK 5653 6479 -2 5 1388 2750 35 120 0 chr1 105377671 105378038 -91817394 + IAPLTR2a LTR ERVK 1 411 0 5 1388 682 197 23 0 chr1 105378053 105378185 -91817247 - ORR1A4 LTR MaLR 0 329 195 5 1388 261 284 13 13 chr1 105378588 105378663 -91816769 + CT-rich Low_complexity Low_complexity 1 75 0 5 1388 314 262 29 0 chr1 105378839 105378942 -91816490 - Lx4B LINE L1 -270 6788 6683 5 1388 2367 164 2 47 chr1 105379276 105379742 -91815690 + RMER16 LTR ERVK 1 533 0 5 1388 1392 6 0 0 chr1 105379835 105379992 -91815440 + (GAA)n Simple_repeat Simple_repeat 3 159 0 5 1388 455 16 48 0 chr1 105379997 105380059 -91815373 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 5 1388 356 346 7 44 chr1 105381148 105381284 -91814148 + RSINE1 SINE B4 35 165 0 5 1388 33 25 0 0 chr1 105381287 105381327 -91814105 + AT_rich Low_complexity Low_complexity 1 40 0 5 1388 250 258 15 0 chr1 105381402 105381468 -91813964 + (TATG)n Simple_repeat Simple_repeat 4 70 0 5 1388 379 337 147 24 chr1 105381483 105381735 -91813697 - B4A SINE B4 -8 284 2 5 1388 32 0 0 0 chr1 105381814 105381846 -91813586 + AT_rich Low_complexity Low_complexity 1 32 0 5 1389 326 179 11 0 chr1 105382481 105382576 -91812856 + GA-rich Low_complexity Low_complexity 1 96 0 5 1389 230 106 41 41 chr1 105382591 105382640 -91812792 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 5 1389 6938 200 22 17 chr1 105382710 105384484 -91810948 - Lx2B LINE L1 -2 6998 5230 5 1389 559 133 0 7 chr1 105384714 105384811 -91810621 + B1_Mus1 SINE Alu 1 92 -25 5 1389 5093 181 78 61 chr1 105384811 105385457 -91809975 - L1VL4 LINE L1 -1223 2336 1637 5 1389 4319 145 147 26 chr1 105385457 105386334 -91809098 + RLTR13C1 LTR ERVK 1 983 0 5 1389 5093 189 72 50 chr1 105386334 105387488 -91807944 - L1VL4 LINE L1 -1923 1636 510 5 1389 210 71 0 0 chr1 105387947 105387975 -91807457 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 5 1389 432 319 121 0 chr1 105388128 105388244 -91807188 - B1_Mur2 SINE Alu -15 134 5 5 1389 206 135 27 0 chr1 105389539 105389576 -91805856 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1389 1991 246 75 33 chr1 105390817 105390926 -91804506 - RMER1B Other Other -5 1061 936 5 1389 257 0 30 0 chr1 105390926 105390959 -91804473 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1389 1991 253 107 25 chr1 105390959 105391701 -91803731 - RMER1B Other Other -131 935 1 5 1389 25 31 0 0 chr1 105391916 105391948 -91803484 + AT_rich Low_complexity Low_complexity 1 32 0 5 1389 517 307 29 38 chr1 105392146 105392356 -91803076 + B3 SINE B2 3 210 -6 5 1389 3170 155 22 6 chr1 105392671 105393217 -91802215 - Lx LINE L1 -1 6653 6099 5 1389 256 132 0 0 chr1 105393221 105393259 -91802173 - Lx LINE L1 -663 5991 5954 5 1389 3770 128 43 5 chr1 105393258 105393878 -91801554 + L1_Mus2 LINE L1 5783 6426 -140 5 1389 251 297 54 0 chr1 105394058 105394132 -91801300 - ID4_ SINE ID -3 80 3 5 1389 781 290 112 16 chr1 105394294 105394606 -91800826 - MT2A LTR ERVL -8 525 184 5 1389 186 136 67 22 chr1 105394616 105394706 -91800726 + T-rich Low_complexity Low_complexity 3 96 0 5 1389 26 50 0 0 chr1 105395125 105395165 -91800267 + AT_rich Low_complexity Low_complexity 1 40 0 5 1389 499 293 163 32 chr1 105395235 105395542 -91799890 + MTE2a LTR MaLR 25 371 -8 5 1389 537 55 0 0 chr1 105396879 105396952 -91798480 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1389 4033 86 0 2 chr1 105397285 105397831 -91797601 + L1_Mus1 LINE L1 6023 6567 0 5 1389 252 320 69 20 chr1 105398190 105398292 -91797140 + RMER15 LTR ERVL 338 444 -131 5 1389 234 247 63 25 chr1 105398925 105399004 -91796428 + RMER15 LTR ERVL 398 479 -96 5 1389 657 0 0 0 chr1 105399036 105399109 -91796323 + (TTCTC)n Simple_repeat Simple_repeat 3 75 0 5 1389 249 162 0 0 chr1 105399111 105399148 -91796284 + polypyrimidine Low_complexity Low_complexity 2 38 0 5 1389 885 190 0 0 chr1 105399158 105399337 -91796095 + CT-rich Low_complexity Low_complexity 2 180 0 5 1389 180 0 0 0 chr1 105400249 105400269 -91795163 + (CAGAT)n Simple_repeat Simple_repeat 4 23 0 5 1389 183 80 0 0 chr1 105400712 105400737 -91794695 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1389 5866 93 57 4 chr1 105400902 105402060 -91793372 - Lx3_Mus LINE L1 -843 6166 4958 5 1389 1339 141 50 0 chr1 105402053 105402273 -91793159 + Lx3_Mus LINE L1 6173 6403 -606 5 1389 2613 72 8 8 chr1 105402273 105402638 -91792794 + L1_Mus2 LINE L1 6202 6566 0 5 1389 312 283 0 39 chr1 105402682 105402785 -91792647 + L1VL2 LINE L1 95 193 -6142 5 1389 27726 134 26 16 chr1 105402791 105408749 -91786683 + L1_Mus1 LINE L1 556 6565 -2 5 1389 1301 181 15 0 chr1 105408765 105409031 -91786401 - L1_Mur1 LINE L1 -2039 3847 3578 5 1389 2432 203 23 37 chr1 105409021 105409856 -91785576 - L1_Mur1 LINE L1 -4322 1564 743 5 1389 335 272 0 0 chr1 105410017 105410098 -91785334 - L1_Mur1 LINE L1 -6231 753 673 5 1389 420 299 30 6 chr1 105410116 105410284 -91785148 - L1_Mur3 LINE L1 -3200 2680 2509 5 1389 7000 33 0 0 chr1 105410540 105411367 -91784065 - L1Md_F3 LINE L1 -17 6567 5741 5 1389 1154 272 24 27 chr1 105411670 105411968 -91783464 - ORR1C1 LTR MaLR -22 345 49 5 1389 2613 264 78 15 chr1 105411982 105412099 -91783333 - ORR1C1-int LTR MaLR -63 1446 1326 5 1389 1029 53 0 0 chr1 105412099 105412231 -91783201 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 5 1389 2613 264 78 15 chr1 105412231 105412309 -91783123 - ORR1C1-int LTR MaLR -184 1325 1245 5 1389 277 75 38 0 chr1 105412309 105412362 -91783070 + (CAA)n Simple_repeat Simple_repeat 2 56 0 5 1389 2613 261 69 21 chr1 105412362 105413180 -91782252 - ORR1C1-int LTR MaLR -265 1244 344 5 1389 27194 169 31 12 chr1 105413191 105415965 -91779467 + L1_Mus2 LINE L1 315 3171 -2712 5 1389 225 0 0 0 chr1 105415965 105415990 -91779442 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 5 1389 27194 124 14 8 chr1 105415990 105419384 -91776048 + L1_Mus2 LINE L1 3172 6565 -1 5 1389 864 276 66 51 chr1 105419427 105419663 -91775769 - ORR1C1-int LTR MaLR -1170 339 102 5 1389 472 192 127 50 chr1 105419663 105419844 -91775588 - B2_Mm2 SINE B2 0 195 1 5 1389 864 276 66 51 chr1 105419844 105419939 -91775493 - ORR1C1-int LTR MaLR -1408 101 3 5 1389 1374 242 20 70 chr1 105419955 105420310 -91775122 - ORR1C1 LTR MaLR -41 337 1 5 1389 252 77 0 0 chr1 105420737 105420776 -91774656 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1389 615 48 0 0 chr1 105420777 105420860 -91774572 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 1389 252 228 0 0 chr1 105420867 105421038 -91774394 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 5 1389 644 196 0 7 chr1 105421038 105421187 -91774245 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 1389 969 237 9 0 chr1 105421485 105421709 -91773723 + URR1A DNA MER1_type 1 226 0 5 1389 2468 225 41 9 chr1 105421832 105422414 -91773018 + Lx4A LINE L1 5959 6559 -499 5 1389 277 231 264 19 chr1 105422412 105422518 -91772914 + Lx4A LINE L1 6925 7056 -2 5 1389 817 269 175 54 chr1 105422583 105423062 -91772370 - RMER15 LTR ERVL 0 575 39 5 1389 759 204 0 20 chr1 105423901 105424051 -91771381 + B1_Mur4 SINE Alu 3 149 -1 5 1389 675 84 0 0 chr1 105424540 105424635 -91770797 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 5 1389 1010 62 0 38 chr1 105424647 105424831 -91770601 + (GGGAA)n Simple_repeat Simple_repeat 2 178 0 5 1389 444 185 33 16 chr1 105424833 105424954 -91770478 + G-rich Low_complexity Low_complexity 1 123 0 5 1389 483 40 40 0 chr1 105425095 105425169 -91770263 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 5 1389 414 57 0 0 chr1 105425205 105425258 -91770174 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 1389 4685 98 0 11 chr1 105425278 105425930 -91769502 - L1_Mus1 LINE L1 -1 6566 5922 5 1389 3213 83 11 3 chr1 105425930 105426465 -91768967 + L1_Mus1 LINE L1 5398 5942 -624 5 1389 473 258 49 16 chr1 105426730 105426852 -91768580 - B1_Mur4 SINE Alu -1 149 24 5 1389 279 0 0 0 chr1 105427652 105427683 -91767749 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1389 608 342 86 82 chr1 105428018 105428437 -91766995 - MTE2b LTR MaLR -15 404 2 5 1389 1117 281 71 123 chr1 105428905 105429770 -91765662 + RLTR22_Mur LTR ERVK 1 813 -995 5 1389 248 253 76 0 chr1 105429891 105429970 -91765462 + RMER12 LTR ERVK 1104 1188 -134 5 1389 803 257 34 62 chr1 105431028 105431351 -91764081 + RLTR6-int LTR ERV1 7342 7655 -123 5 1389 2549 74 3 0 chr1 105431747 105432084 -91763348 + ORR1A1 LTR MaLR 1 338 -8 5 1389 22 0 0 0 chr1 105432556 105432578 -91762854 + AT_rich Low_complexity Low_complexity 1 22 0 5 1389 246 233 50 0 chr1 105433464 105433524 -91761908 + MTC LTR MaLR 296 358 -63 5 1389 2160 97 15 12 chr1 105433709 105434042 -91761390 - L1Md_F2 LINE L1 -1 6581 6248 5 1389 2241 53 7 0 chr1 105434043 105434326 -91761106 - L1Md_F2 LINE L1 -231 6351 6067 5 1389 632 40 0 0 chr1 105434315 105434391 -91761041 + L1Md_F2 LINE L1 5994 6069 -513 5 1389 744 61 0 0 chr1 105434476 105434574 -91760858 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 5 1389 286 273 0 0 chr1 105434757 105434834 -91760598 + L1MA5A LINE L1 5847 5923 -374 5 1389 275 217 9 0 chr1 105434933 105435039 -91760393 + GA-rich Low_complexity Low_complexity 2 108 0 5 1389 4475 68 0 0 chr1 105435254 105435844 -91759588 - L1_Mm LINE L1 -1646 4237 3648 5 1389 2625 69 9 0 chr1 105435835 105436184 -91759248 + L1_Mm LINE L1 4263 4614 -1269 5 1389 544 238 188 54 chr1 105436231 105436471 -91758961 + RLTR10A LTR ERVK 140 411 0 6 1389 433 174 61 52 chr1 105436487 105436602 -91758830 + IAP-d-int LTR ERVK 318 433 -1554 6 1389 4128 306 56 48 chr1 105436840 105439796 -91755636 + IAP-d-int LTR ERVK 992 5195 -1347 6 1389 33354 39 3 1 chr1 105439824 105444943 -91750489 + L1Md_Gf LINE L1 472 5656 -230 6 1389 252 362 74 136 chr1 105445454 105445630 -91749802 + B4A SINE B4 1 165 -127 6 1389 249 119 0 0 chr1 105445839 105445881 -91749551 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1389 805 372 23 0 chr1 105446093 105446351 -91749081 - B4A SINE B4 -20 272 9 6 1389 513 311 26 26 chr1 105446410 105446565 -91748867 - RSINE1 SINE B4 0 165 11 6 1389 236 0 0 0 chr1 105446670 105446697 -91748735 - Lx2 LINE L1 -1265 5732 5706 6 1389 1600 100 84 0 chr1 105446697 105446936 -91748496 + L1_Mus2 LINE L1 6305 6563 -3 6 1389 1447 179 78 0 chr1 105448089 105448385 -91747047 + ORR1A2 LTR MaLR 1 319 -8 6 1389 336 111 0 0 chr1 105448508 105448571 -91746861 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 6 1389 535 49 24 0 chr1 105448860 105448942 -91746490 + L1_Mus2 LINE L1 6483 6566 0 6 1389 489 110 0 0 chr1 105450232 105450305 -91745127 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1389 2027 223 55 76 chr1 105450360 105450841 -91744591 + RLTR20B2 LTR ERVK 4 455 -105 6 1389 255 103 0 0 chr1 105450841 105450880 -91744552 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1389 2027 223 55 76 chr1 105450880 105450966 -91744466 + RLTR20B2 LTR ERVK 456 558 -2 6 1389 484 301 82 0 chr1 105451194 105451390 -91744042 - B3 SINE B2 -1 215 4 6 1389 436 353 9 35 chr1 105452333 105452559 -91742873 - Lx8 LINE L1 -976 6497 6278 6 1389 461 293 101 26 chr1 105453222 105453450 -91741982 + L1M4 LINE L1 5489 5733 -451 6 1389 664 272 39 39 chr1 105453847 105454080 -91741352 - Lx5 LINE L1 -696 6354 6122 6 1389 4104 180 8 19 chr1 105454121 105454857 -91740575 - RMER19A LTR ERVK -9 728 1 6 1389 1580 218 27 3 chr1 105454857 105455193 -91740239 - Lx5 LINE L1 -960 6090 5747 6 1389 7143 164 30 2 chr1 105455194 105456559 -91738873 + L1_Mur2 LINE L1 2504 3906 -1971 6 1389 265 200 0 0 chr1 105456635 105456690 -91738742 + L1_Mur2 LINE L1 3944 3998 -1879 6 1389 852 135 0 114 chr1 105456757 105456849 -91738583 + B1_Mur3 SINE Alu 2 79 -70 6 1389 855 80 39 32 chr1 105456849 105457005 -91738427 - L1Md_F2 LINE L1 -2 6580 6424 6 1389 852 135 0 114 chr1 105457005 105457071 -91738361 + B1_Mur3 SINE Alu 80 143 -6 6 1389 186 43 0 0 chr1 105457071 105457094 -91738338 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1389 8051 55 2 1 chr1 105457173 105458849 -91736583 - L1Md_F2 LINE L1 -18 6564 4886 6 1389 245 319 62 21 chr1 105459455 105459746 -91735686 + L1MD2 LINE L1 5658 5960 -399 6 1389 319 305 46 0 chr1 105460078 105460209 -91735223 + RMER15 LTR ERVL 373 509 -66 6 1389 589 130 112 16 chr1 105460312 105460437 -91734995 - Lx LINE L1 -45 6609 6473 6 1389 354 308 11 0 chr1 105460516 105460607 -91734825 + B3A SINE B2 26 117 -81 6 1389 737 317 128 48 chr1 105460739 105461137 -91734295 + RLTR26 LTR ERVK 1 430 -212 6 1389 260 388 21 73 chr1 105461339 105461531 -91733901 + B4A SINE B4 52 233 -59 6 1389 27 29 0 0 chr1 105462308 105462342 -91733090 + AT_rich Low_complexity Low_complexity 1 34 0 6 1389 22 0 0 0 chr1 105462384 105462406 -91733026 + AT_rich Low_complexity Low_complexity 1 22 0 6 1389 390 57 0 0 chr1 105462995 105463048 -91732384 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1389 1447 288 25 13 chr1 105463138 105463536 -91731896 + Lx6 LINE L1 6871 7273 -187 6 1389 516 362 38 14 chr1 105463536 105463749 -91731683 - B4A SINE B4 -65 227 10 6 1389 427 255 28 0 chr1 105463770 105463876 -91731556 - Lx7 LINE L1 -661 7035 6927 6 1389 542 319 5 65 chr1 105464241 105464462 -91730970 + B3 SINE B2 11 215 -1 6 1389 31 26 0 0 chr1 105464464 105464502 -91730930 + AT_rich Low_complexity Low_complexity 1 38 0 6 1389 243 0 0 0 chr1 105464616 105464643 -91730789 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1389 2684 204 79 113 chr1 105464862 105465785 -91729647 - RLTR13D6 LTR ERVK -9 893 2 6 1389 529 31 0 0 chr1 105466074 105466138 -91729294 - L1Md_A LINE L1 -493 6089 6026 6 1389 4300 34 0 0 chr1 105466138 105466641 -91728791 + L1Md_T LINE L1 6080 6582 0 6 1389 501 17 0 0 chr1 105466781 105466839 -91728593 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1389 1570 31 5 16 chr1 105467096 105467290 -91728142 + B2_Mm1t SINE B2 2 193 0 6 1389 219 209 0 0 chr1 105468376 105468419 -91727013 - PB1D9 SINE Alu -52 68 26 6 1389 286 236 49 106 chr1 105470676 105470799 -91724633 - PB1D7 SINE Alu 0 120 5 6 1389 282 292 26 86 chr1 105470707 105470823 -91724609 - B4A SINE B4 -113 179 71 6 1389 1616 66 5 0 chr1 105471033 105471244 -91724188 + L1_Mus1 LINE L1 6356 6567 0 6 1389 3189 217 87 103 chr1 105471281 105471935 -91723497 - L1_Mur3 LINE L1 -736 5144 4467 6 1389 406 83 0 0 chr1 105471935 105471995 -91723437 + B1_Mus2 SINE Alu 1 60 -87 6 1389 3189 217 87 103 chr1 105471995 105472416 -91723016 - L1_Mur3 LINE L1 -736 4466 4028 6 1389 2127 237 24 28 chr1 105472427 105473097 -91722335 - L1_Mur3 LINE L1 -2698 3182 2516 6 1389 192 40 0 0 chr1 105473395 105473420 -91722012 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1389 691 250 7 0 chr1 105473712 105473852 -91721580 + B1_Mur3 SINE Alu 9 149 0 6 1389 387 85 24 12 chr1 105473870 105473953 -91721479 + (CAAAA)n Simple_repeat Simple_repeat 5 88 0 6 1389 318 326 0 0 chr1 105474088 105474186 -91721246 + MTE2b LTR MaLR 3 100 -279 6 1389 250 366 10 10 chr1 105474193 105474295 -91721137 + MTE2b LTR MaLR 68 169 -210 6 1389 882 50 0 0 chr1 105474964 105475084 -91720348 + (CA)n Simple_repeat Simple_repeat 2 121 0 6 1389 181 225 22 0 chr1 105476174 105476263 -91719169 + CT-rich Low_complexity Low_complexity 2 92 0 6 1389 191 300 75 57 chr1 105476646 105476752 -91718680 - MER5A DNA MER1_type -42 147 40 6 1389 361 284 19 10 chr1 105477395 105477498 -91717934 - Lx8 LINE L1 -184 7289 7186 6 1389 299 292 75 68 chr1 105477549 105477696 -91717736 - MER67C LTR ERV1 -48 663 516 6 1389 3899 47 8 0 chr1 105478731 105479216 -91716216 - L1Md_F2 LINE L1 0 6582 6094 6 1389 279 314 118 30 chr1 105479302 105479455 -91715977 - B3 SINE B2 -30 168 2 6 1389 2486 122 34 0 chr1 105480010 105480395 -91715037 + Lx LINE L1 6009 6406 -248 6 1389 273 299 13 13 chr1 105480395 105480473 -91714959 - MTE2b LTR MaLR -299 80 3 6 1389 225 0 0 0 chr1 105480815 105480840 -91714592 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1389 371 80 33 33 chr1 105480935 105481026 -91714406 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 6 1389 1107 76 7 0 chr1 105481029 105481174 -91714258 - B1_Mus2 SINE Alu 0 147 2 6 1389 27648 30 3 0 chr1 105481294 105485290 -91710142 - L1Md_A LINE L1 0 6582 2574 6 1389 3039 3 5 52 chr1 105485290 105485675 -91709757 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1389 8341 68 66 74 chr1 105485675 105486991 -91708441 + IAPEz-int LTR ERVK 8 1313 -5168 6 1389 28722 20 3 1 chr1 105486990 105490255 -91705177 + IAPEz-int LTR ERVK 3210 6478 -3 6 1389 3039 3 5 52 chr1 105490259 105490644 -91704788 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1389 11137 33 2 1 chr1 105490644 105492591 -91702841 - L1Md_A LINE L1 -3304 2579 631 6 1389 2288 314 56 89 chr1 105492751 105493970 -91701462 - Lx7 LINE L1 -377 7319 6142 6 1389 274 358 0 107 chr1 105494077 105494227 -91701205 - B4A SINE B4 -50 242 109 6 1389 1025 296 125 16 chr1 105494261 105494638 -91700794 + MTC LTR MaLR 4 421 0 6 1389 225 318 15 0 chr1 105494644 105494710 -91700722 - B4 SINE B4 -219 73 7 6 1389 200 143 22 67 chr1 105495053 105495143 -91700289 + A-rich Low_complexity Low_complexity 2 87 0 6 1389 240 35 0 0 chr1 105495187 105495216 -91700216 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1389 1661 200 3 10 chr1 105495376 105495689 -91699743 + RMER19B LTR ERVK 584 894 -8 6 1389 13465 199 57 19 chr1 105495869 105497046 -91698386 + L1VL2 LINE L1 410 1638 -2276 6 1389 369 0 0 0 chr1 105497046 105497087 -91698345 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1389 13465 156 17 9 chr1 105497087 105499251 -91696181 + L1VL2 LINE L1 1639 3845 -2298 6 1389 21 0 0 0 chr1 105499452 105499473 -91695959 + AT_rich Low_complexity Low_complexity 1 21 0 6 1389 769 353 25 21 chr1 105500819 105501100 -91694332 - MTE2a LTR MaLR -38 341 60 1 1389 184 310 27 27 chr1 105502046 105502119 -91693313 - L4 LINE RTE -501 1528 1456 2 1389 1093 345 11 24 chr1 105502296 105502667 -91692765 - MTE2b LTR MaLR -13 366 1 3 1389 50 0 0 0 chr1 105503912 105503962 -91691470 + AT_rich Low_complexity Low_complexity 1 50 0 4 1389 263 396 0 14 chr1 105504062 105504203 -91691229 - Lx8 LINE L1 -127 7346 7208 5 1389 1841 156 20 64 chr1 105504359 105504701 -91690731 - ORR1A2 LTR MaLR 0 327 1 6 1389 328 302 88 10 chr1 105504811 105505015 -91690417 - L1MA4 LINE L1 -386 5914 5695 7 1389 537 16 0 0 chr1 105505277 105505339 -91690093 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 1389 239 94 45 30 chr1 105506248 105506314 -91689118 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 9 1389 315 304 0 0 chr1 105506576 105506655 -91688777 + B4 SINE B4 214 292 0 1 1389 728 168 148 91 chr1 105506902 105507112 -91688320 + URR1B DNA MER1_type 3 224 -1 1 1389 240 100 0 0 chr1 105507288 105507328 -91688104 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1389 201 74 0 0 chr1 105507756 105507783 -91687649 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1389 180 184 0 0 chr1 105507848 105507897 -91687535 + T-rich Low_complexity Low_complexity 1 49 0 1 1389 530 54 26 43 chr1 105508083 105508199 -91687233 + (TTTTG)n Simple_repeat Simple_repeat 2 115 0 1 1389 226 314 160 28 chr1 105508407 105508551 -91686881 + MLT1H1 LTR MaLR 1 163 -392 1 1389 232 234 15 59 chr1 105508710 105508778 -91686654 + RMER15 LTR ERVL 1 65 -510 1 1389 1059 211 9 5 chr1 105508951 105509161 -91686271 + RLTR20B2 LTR ERVK 241 451 -109 1 1389 773 227 256 37 chr1 105509145 105509466 -91685966 + RMER15 LTR ERVL 180 570 -5 1 1389 7058 82 0 1 chr1 105510555 105511482 -91683950 + L1_Mus1 LINE L1 5653 6548 -19 1 1389 4496 30 0 0 chr1 105511482 105512007 -91683425 + L1Md_T LINE L1 6058 6582 0 2 1389 249 343 78 14 chr1 105512037 105512179 -91683253 + RMER12 LTR ERVK 696 846 -476 2 1389 312 127 0 0 chr1 105512183 105512238 -91683194 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1389 276 100 0 0 chr1 105512323 105512363 -91683069 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2 1389 1037 109 0 13 chr1 105512363 105512504 -91682928 - B1_Mm SINE Alu -7 140 1 2 1389 32 0 0 0 chr1 105512504 105512536 -91682896 + AT_rich Low_complexity Low_complexity 1 32 0 2 1389 343 345 113 14 chr1 105512596 105512737 -91682695 - B3A SINE B2 -43 155 1 2 1389 339 314 34 45 chr1 105512737 105512941 -91682491 - B4A SINE B4 -63 229 27 2 1390 21 57 0 0 chr1 105513150 105513185 -91682247 + AT_rich Low_complexity Low_complexity 1 35 0 2 1390 337 211 105 0 chr1 105513534 105513610 -91681822 + MTE2b LTR MaLR 165 248 -131 2 1390 354 23 0 0 chr1 105514449 105514492 -91680940 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1390 204 40 0 0 chr1 105514494 105514519 -91680913 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1390 1185 271 45 114 chr1 105514658 105515062 -91680370 + MTEa LTR MaLR 2 377 -2 3 1390 229 344 43 11 chr1 105515370 105515464 -91679968 - RMER12 LTR ERVK -238 1084 988 3 1390 2147 246 27 65 chr1 105516717 105517274 -91678158 - RMER20B LTR ERVK 0 627 92 3 1390 1168 191 153 80 chr1 105517985 105518337 -91677095 - ORR1C1 LTR MaLR 0 378 1 3 1390 647 398 14 7 chr1 105519032 105519308 -91676124 - B4A SINE B4 -1 291 14 3 1390 657 92 0 0 chr1 105519792 105519890 -91675542 + (GA)n Simple_repeat Simple_repeat 1 98 0 3 1390 472 298 16 0 chr1 105519902 105520026 -91675406 + B3 SINE B2 79 204 -12 3 1390 26 30 0 0 chr1 105520042 105520075 -91675357 + AT_rich Low_complexity Low_complexity 1 33 0 3 1390 323 186 14 14 chr1 105520488 105520559 -91674873 - MT2A LTR ERVL -462 71 1 4 1390 437 306 66 26 chr1 105520628 105520779 -91674653 + B3A SINE B2 41 197 -1 4 1390 997 96 0 0 chr1 105521401 105521536 -91673896 - B1_Mm SINE Alu -12 135 1 4 1390 340 318 177 29 chr1 105521810 105521985 -91673447 + B4A SINE B4 12 212 -80 4 1390 393 22 0 0 chr1 105521989 105522035 -91673397 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 1390 280 260 13 13 chr1 105522153 105522231 -91673201 + GA-rich Low_complexity Low_complexity 3 80 0 4 1390 21 0 0 0 chr1 105522433 105522454 -91672978 + AT_rich Low_complexity Low_complexity 1 21 0 4 1390 808 324 24 4 chr1 105522921 105523169 -91672263 + B4A SINE B4 13 265 -27 4 1390 249 33 0 0 chr1 105523179 105523209 -91672223 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1390 217 295 98 0 chr1 105524413 105524474 -91670958 - B4A SINE B4 -224 68 2 4 1390 489 338 39 39 chr1 105524995 105525201 -91670231 + ID_B1 SINE B4 3 208 -16 5 1390 995 215 18 5 chr1 105525476 105525696 -91669736 - URR1B DNA MER1_type -1 224 2 5 1390 180 0 0 0 chr1 105526143 105526163 -91669269 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 5 1390 355 63 32 0 chr1 105526192 105526255 -91669177 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 5 1390 2971 218 75 80 chr1 105526553 105527459 -91667973 + RMER19B LTR ERVK 1 902 0 5 1390 21 0 0 0 chr1 105527892 105527913 -91667519 + AT_rich Low_complexity Low_complexity 1 21 0 5 1390 396 327 112 23 chr1 105527939 105528217 -91667215 - B4 SINE B4 -16 276 2 5 1390 384 40 0 0 chr1 105528631 105528681 -91666751 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1390 218 382 54 47 chr1 105528973 105529102 -91666330 - B3A SINE B2 -14 184 55 5 1390 264 202 185 25 chr1 105529102 105529183 -91666249 - B4 SINE B4 -196 96 3 5 1390 23 68 0 0 chr1 105529272 105529316 -91666116 + AT_rich Low_complexity Low_complexity 1 44 0 6 1390 266 319 21 21 chr1 105529331 105529427 -91666005 - Tigger5 DNA MER2_type -20 2386 2291 6 1390 253 319 0 14 chr1 105529560 105529630 -91665802 + B4 SINE B4 5 73 -219 6 1390 666 257 0 14 chr1 105529629 105529775 -91665657 - MTD LTR MaLR -263 156 13 6 1390 4037 108 32 0 chr1 105529939 105530589 -91664843 + MusHAL1 LINE L1 537 1207 -1505 6 1390 726 288 115 8 chr1 105530612 105530847 -91664585 - RMER20B LTR ERVK 0 627 368 6 1390 26 64 0 0 chr1 105530935 105530982 -91664450 + AT_rich Low_complexity Low_complexity 1 47 0 6 1390 471 296 148 42 chr1 105531181 105531740 -91663692 + L1M2 LINE L1 4659 5235 -908 6 1390 585 265 76 87 chr1 105531842 105532119 -91663313 + RMER17C-int LTR ERVK 360 633 -2605 6 1390 24 32 0 0 chr1 105532485 105532516 -91662916 + AT_rich Low_complexity Low_complexity 1 31 0 6 1390 191 217 17 0 chr1 105532518 105532578 -91662854 + (CAT)n Simple_repeat Simple_repeat 2 62 0 7 1390 264 326 23 0 chr1 105532604 105532690 -91662742 - PB1D9 SINE Alu -9 111 24 7 1390 196 300 29 0 chr1 105532923 105532993 -91662439 + MIRc SINE MIR 4 75 -193 7 1390 534 16 0 0 chr1 105533390 105533453 -91661979 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1390 1001 102 99 23 chr1 105533558 105533729 -91661703 - B2_Mm1t SINE B2 -8 185 2 7 1390 22 0 0 0 chr1 105533996 105534018 -91661414 + AT_rich Low_complexity Low_complexity 1 22 0 7 1390 278 282 12 12 chr1 105534027 105534113 -91661319 + CT-rich Low_complexity Low_complexity 4 89 0 7 1390 5672 98 4 0 chr1 105534495 105535517 -91659915 + L1_Mus2 LINE L1 5085 6109 -457 7 1390 212 329 48 84 chr1 105535909 105535992 -91659440 - RSINE1 SINE B4 -82 83 4 7 1390 676 320 65 26 chr1 105537330 105537638 -91657794 - MTD LTR MaLR -15 404 85 7 1390 573 214 101 30 chr1 105537667 105537813 -91657619 - Lx9 LINE L1 -1 7643 7480 8 1390 450 36 0 0 chr1 105537813 105537869 -91657563 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1390 573 214 101 30 chr1 105537869 105537920 -91657512 - Lx9 LINE L1 -165 7479 7432 8 1390 246 286 0 0 chr1 105537920 105537976 -91657456 + Lx9 LINE L1 7223 7278 -366 8 1390 602 297 37 108 chr1 105537979 105538387 -91657045 - MTE2a LTR MaLR 0 379 1 8 1390 312 223 65 46 chr1 105538612 105538720 -91656712 + L1MEc LINE L1 1337 1446 -4954 8 1390 252 268 32 24 chr1 105539302 105539357 -91656075 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 8 1390 486 108 0 0 chr1 105539357 105539440 -91655992 + (CATA)n Simple_repeat Simple_repeat 2 84 0 8 1390 252 268 32 24 chr1 105539440 105539510 -91655922 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8 1390 189 74 0 0 chr1 105540640 105540667 -91654765 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1390 535 376 0 0 chr1 105541956 105542105 -91653327 + RSINE1 SINE B4 13 161 -4 8 1390 1636 220 39 25 chr1 105542299 105542442 -91652990 + ORR1C1 LTR MaLR 9 154 -224 9 1390 880 80 36 0 chr1 105542442 105542579 -91652853 + L1Md_F2 LINE L1 6439 6580 -2 9 1390 1636 220 39 25 chr1 105542579 105542798 -91652634 + ORR1C1 LTR MaLR 155 376 -2 9 1390 36 91 0 0 chr1 105542935 105543034 -91652398 + AT_rich Low_complexity Low_complexity 1 99 0 9 1390 262 352 12 6 chr1 105543424 105543587 -91651845 - L1MC2 LINE L1 -8 7777 7614 9 1390 334 332 24 15 chr1 105543683 105543888 -91651544 - L1MC2 LINE L1 -1570 6425 6219 9 1390 350 306 27 43 chr1 105544542 105544798 -91650634 - L1MC2 LINE L1 -396 5948 5697 9 1390 381 285 60 40 chr1 105545702 105545852 -91649580 - RMER15 LTR ERVL -73 502 350 9 1390 426 368 31 0 chr1 105547120 105547283 -91648149 + B4 SINE B4 120 287 -5 9 1390 351 68 26 52 chr1 105547329 105547406 -91648026 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 9 1390 378 0 0 0 chr1 105547630 105547672 -91647760 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1390 468 0 0 0 chr1 105547864 105547916 -91647516 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1390 937 297 3 42 chr1 105548644 105548932 -91646500 - B4A SINE B4 -4 288 12 9 1390 761 326 131 71 chr1 105549060 105549751 -91645681 - Lx8 LINE L1 -28 7445 6665 1 1390 1078 289 25 40 chr1 105549751 105549825 -91645607 - ORR1B1 LTR MaLR 0 394 333 1 1390 1019 90 15 0 chr1 105549825 105549959 -91645473 + B1_Mus2 SINE Alu 2 137 -10 1 1390 207 0 0 0 chr1 105549959 105549982 -91645450 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1390 1078 289 25 40 chr1 105549982 105550306 -91645126 - ORR1B1 LTR MaLR -62 332 2 1 1390 761 324 80 71 chr1 105550306 105550527 -91644905 - Lx8 LINE L1 -809 6664 6470 1 1390 878 221 71 6 chr1 105552732 105552914 -91642518 + MTB_Mm LTR MaLR 212 405 -2 1 1390 445 161 41 12 chr1 105554733 105554903 -91640529 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 1 1390 888 75 0 0 chr1 105554906 105555040 -91640392 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 1390 437 242 65 0 chr1 105555042 105555166 -91640266 - B1_Mus1 SINE Alu -16 132 1 1 1390 2101 88 3 3 chr1 105555204 105555502 -91639930 - L1_Mus2 LINE L1 0 6566 6269 1 1390 757 268 53 9 chr1 105555721 105555947 -91639485 + Lx8 LINE L1 6565 6800 -673 1 1390 181 231 37 37 chr1 105556158 105556212 -91639220 - L3 LINE CR1 -3372 1117 1064 1 1390 294 143 0 0 chr1 105556651 105556700 -91638732 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1 1390 441 81 0 0 chr1 105558160 105558222 -91637210 + (TCTTG)n Simple_repeat Simple_repeat 5 66 0 1 1390 676 270 139 17 chr1 105558277 105558514 -91636918 - Lx8 LINE L1 -394 7079 6814 1 1390 429 90 0 0 chr1 105558944 105559011 -91636421 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1390 366 23 0 0 chr1 105559012 105559055 -91636377 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1390 482 333 151 8 chr1 105559091 105559336 -91636096 - B4 SINE B4 -7 285 6 1 1390 513 297 79 72 chr1 105559662 105560006 -91635426 - MuRRS4-int LTR ERV1 -1997 3066 2801 1 1390 428 326 64 62 chr1 105560122 105560864 -91634568 - MuRRS4-int LTR ERV1 -5114 2442 1788 1 1390 536 332 37 5 chr1 105560930 105561145 -91634287 - MuRRS4-int LTR ERV1 -3537 1526 1305 1 1390 233 175 100 100 chr1 105561223 105561293 -91634139 + LTRIS5 LTR ERV1 349 418 -29 1 1390 272 292 33 33 chr1 105561940 105562032 -91633400 - MuRRS4-int LTR ERV1 -6878 678 587 1 1390 650 149 155 0 chr1 105562682 105562830 -91632602 - RLTR47_MM LTR ERV1 0 532 362 1 1390 275 154 0 55 chr1 105562830 105562885 -91632547 + L1_Rod LINE L1 2695 2746 -3101 1 1390 1060 270 115 37 chr1 105562888 105562924 -91632508 - L1_Rod LINE L1 -3233 2614 2582 1 1390 912 87 0 0 chr1 105562924 105563051 -91632381 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1 1390 1060 270 115 37 chr1 105563051 105563255 -91632177 - L1_Rod LINE L1 -3266 2581 2344 1 1390 3477 92 35 0 chr1 105563255 105563734 -91631698 + L1_Mus1 LINE L1 6071 6566 -1 1 1390 1060 270 115 37 chr1 105563734 105564007 -91631425 - L1_Rod LINE L1 -3504 2343 2060 1 1390 183 80 0 0 chr1 105564216 105564241 -91631191 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 1 1390 4998 61 11 0 chr1 105564500 105565136 -91630296 - L1Md_F2 LINE L1 -14 6568 5926 1 1390 296 161 0 18 chr1 105565136 105565186 -91630246 - 4.5SRNA scRNA scRNA -6 88 40 1 1390 329 121 86 0 chr1 105565143 105565201 -91630231 - RLTR25B LTR ERVK -543 485 423 1 1390 387 74 0 14 chr1 105565333 105565402 -91630030 - L1Md_F3 LINE L1 -2 6582 6515 1 1390 577 296 118 0 chr1 105565426 105565612 -91629820 + Lx5 LINE L1 6836 7043 -7 1 1390 1301 55 0 0 chr1 105565757 105565921 -91629511 - RLTR1B-int LTR ERV1 -474 2825 2662 1 1390 233 57 29 0 chr1 105566354 105566389 -91629043 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 1 1390 521 370 26 4 chr1 105566668 105566939 -91628493 + B4A SINE B4 3 279 -13 1 1390 1312 81 11 0 chr1 105567571 105567756 -91627676 + B2_Mm1a SINE B2 7 193 0 1 1390 891 193 5 81 chr1 105568177 105568374 -91627058 + MTD LTR MaLR 177 358 -61 1 1390 2073 260 45 78 chr1 105568374 105569013 -91626419 - RMER20B LTR ERVK 0 627 10 1 1390 260 221 0 56 chr1 105569015 105569087 -91626345 + MTD LTR MaLR 353 420 -1 1 1390 468 116 0 0 chr1 105570599 105570685 -91624747 + (GA)n Simple_repeat Simple_repeat 2 87 0 1 1390 423 0 0 0 chr1 105571509 105571556 -91623876 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1390 7368 86 5 0 chr1 105571598 105572671 -91622761 - L1_Mus1 LINE L1 -1 6566 5489 1 1390 225 345 48 102 chr1 105573411 105573746 -91621686 - RLTR25B LTR ERVK -701 327 11 1 1390 405 0 0 0 chr1 105574325 105574370 -91621062 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1390 17431 69 3 1 chr1 105575103 105577401 -91618031 + L1Md_F2 LINE L1 3285 5586 -297 1 1390 7940 56 0 3 chr1 105577401 105578392 -91617040 + L1Md_F2 LINE L1 5587 6574 -8 1 1390 212 0 0 35 chr1 105578405 105578434 -91616998 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1390 5021 78 32 6 chr1 105578435 105579142 -91616290 + L1_Mm LINE L1 4606 5331 -552 1 1390 1951 64 8 4 chr1 105579142 105579408 -91616024 + L1Md_F2 LINE L1 6316 6582 0 1 1390 315 0 0 0 chr1 105579734 105579769 -91615663 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1390 261 0 0 0 chr1 105579792 105579821 -91615611 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1390 180 0 0 0 chr1 105579821 105579841 -91615591 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1 1390 180 0 0 0 chr1 105579839 105579859 -91615573 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1390 321 306 80 36 chr1 105579931 105580043 -91615389 - Lx8 LINE L1 -198 7275 7159 1 1390 5335 157 77 5 chr1 105580205 105580575 -91614857 - L1_Mur2 LINE L1 -3429 2448 2050 1 1390 369 0 0 0 chr1 105580575 105580616 -91614816 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1390 5335 152 70 5 chr1 105580616 105581437 -91613995 - L1_Mur2 LINE L1 -3828 2049 1173 1 1390 927 51 0 0 chr1 105581443 105581560 -91613872 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 1 1390 2731 111 2 19 chr1 105581565 105581998 -91613434 - L1_Mm LINE L1 -2864 3019 2594 1 1390 2488 221 55 0 chr1 105581972 105582516 -91612916 - L1_Mur2 LINE L1 -5932 1154 581 1 1390 17113 88 6 13 chr1 105582508 105583373 -91612059 - L1Md_Gf LINE L1 -2202 3684 2824 1 1390 3465 18 2 0 chr1 105583373 105583768 -91611664 + MTA_Mm LTR MaLR 1 396 0 1 1390 17113 88 6 13 chr1 105583768 105584626 -91610806 - L1Md_Gf LINE L1 -3063 2823 1974 1 1390 180 0 0 0 chr1 105584626 105584646 -91610786 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1 1390 294 29 0 0 chr1 105584647 105584682 -91610750 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1390 17113 101 6 12 chr1 105584682 105585830 -91609602 - L1Md_Gf LINE L1 -3913 1973 732 1 1390 301 363 77 25 chr1 105586526 105586800 -91608632 + L1M4 LINE L1 3570 3857 -2289 1 1390 1667 211 94 0 chr1 105586802 105587153 -91608279 + ORR1B1 LTR MaLR 2 385 -9 1 1390 313 329 113 49 chr1 105587157 105587502 -91607930 + L1M4 LINE L1 3832 4198 -1948 1 1390 3750 202 58 15 chr1 105587554 105587700 -91607732 + MurERV4_19-int LTR ERVK 1919 2064 -3716 1 1390 213 39 0 0 chr1 105587700 105587726 -91607706 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1390 3750 202 58 15 chr1 105587726 105588454 -91606978 + MurERV4_19-int LTR ERVK 2065 2830 -2950 1 1390 221 30 61 0 chr1 105588662 105588695 -91606737 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1390 282 194 0 0 chr1 105588761 105588828 -91606604 + A-rich Low_complexity Low_complexity 1 67 0 1 1390 236 82 48 67 chr1 105588833 105588938 -91606494 + (CTAAA)n Simple_repeat Simple_repeat 3 105 0 1 1390 1936 176 50 8 chr1 105589077 105589478 -91605954 - MurERV4_19-int LTR ERVK -580 5200 4783 1 1390 5745 170 26 50 chr1 105589522 105590493 -91604939 - MurERV4_19-int LTR ERVK -1700 4080 3131 1 1390 210 37 0 0 chr1 105590493 105590520 -91604912 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1390 5745 170 26 50 chr1 105590520 105590799 -91604633 - MurERV4_19-int LTR ERVK -2650 3130 2861 1 1390 7071 40 0 0 chr1 105590828 105591675 -91603757 - L1Md_T LINE L1 -1 6581 5735 1 1390 353 113 359 0 chr1 105591709 105591815 -91603617 + MERVL_2A-int LTR ERVL 5486 5629 -132 1 1390 288 200 25 51 chr1 105591815 105591894 -91603538 + ORR1A3-int LTR MaLR 567 643 -1320 1 1390 3315 71 55 11 chr1 105591922 105592377 -91603055 + MT2C_Mm LTR ERVL 1 475 0 1 1390 773 226 69 49 chr1 105592377 105592624 -91602808 - MYSERV16_I-int LTR ERVK -1787 539 288 1 1390 1491 221 6 22 chr1 105592642 105593008 -91602424 - RMER3D-int LTR ERVK -1461 1381 1022 1 1390 438 145 0 0 chr1 105593008 105593077 -91602355 - Lx2 LINE L1 -718 6279 6211 1 1390 4084 172 10 1 chr1 105593077 105593786 -91601646 + Lx2 LINE L1 6283 6997 0 1 1390 262 256 123 39 chr1 105594022 105594152 -91601280 - RMER3D-int LTR ERVK -2691 151 11 1 1390 6122 136 28 2 chr1 105594156 105595426 -91600006 - L1VL4 LINE L1 -2443 1116 1 1 1390 1042 81 7 0 chr1 105595526 105595662 -91599770 + B1_Mm SINE Alu 1 137 -10 1 1390 1463 312 10 10 chr1 105595688 105596174 -91599258 - Lx9 LINE L1 -192 7452 6967 1 1390 1503 22 0 0 chr1 105596228 105596407 -91599025 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1390 247 104 20 20 chr1 105596407 105596456 -91598976 + (TTCTCC)n Simple_repeat Simple_repeat 4 52 0 1 1390 453 290 71 21 chr1 105596471 105596612 -91598820 - B1_Mur2 SINE Alu 0 149 2 1 1390 256 287 27 82 chr1 105596518 105596628 -91598804 - MT2B LTR ERVL -343 258 155 1 1390 492 257 20 60 chr1 105597970 105598119 -91597313 + B4A SINE B4 150 292 0 1 1390 219 210 0 31 chr1 105598667 105598731 -91596701 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1 1390 233 270 79 0 chr1 105598741 105598804 -91596628 - B4A SINE B4 -217 75 8 1 1390 421 373 26 26 chr1 105598813 105598967 -91596465 - ID_B1 SINE B4 -69 155 2 1 1390 777 351 81 6 chr1 105599394 105599715 -91595717 + ORR1D2 LTR MaLR 3 347 -23 1 1390 883 306 14 71 chr1 105599900 105600196 -91595236 + B4 SINE B4 14 292 0 1 1390 288 0 0 0 chr1 105600247 105600279 -91595153 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1390 468 339 20 65 chr1 105600341 105600540 -91594892 - B3A SINE B2 -1 197 8 1 1390 5948 166 5 14 chr1 105601563 105602635 -91592797 - Lx2 LINE L1 -2 6995 5934 1 1390 3692 196 35 9 chr1 105602650 105603451 -91591981 + L1_Mur2 LINE L1 5053 5874 -3 1 1390 357 125 16 0 chr1 105603453 105603517 -91591915 - L1_Mur2 LINE L1 -1956 3921 3857 1 1390 7726 130 37 19 chr1 105603548 105605721 -91589711 - L1_Mus2 LINE L1 -1 6565 4344 1 1390 1403 224 3 0 chr1 105605728 105606063 -91589369 - L1_Mur2 LINE L1 -2169 3708 3373 1 1390 4886 195 34 17 chr1 105606045 105606337 -91589095 - L1VL4 LINE L1 -1144 2415 2096 1 1390 4366 109 12 0 chr1 105606337 105606977 -91588455 + L1_Mus3 LINE L1 5990 6637 -1 1 1390 4886 195 34 17 chr1 105606977 105607840 -91587592 - L1VL4 LINE L1 -1464 2095 1241 1 1390 7383 99 0 3 chr1 105607837 105609201 -91586231 - L1_Mus1 LINE L1 -1 6653 5213 1 1390 3287 142 20 12 chr1 105609201 105609586 -91585846 + L1_Mm LINE L1 4627 5016 -867 1 1390 5132 61 1 69 chr1 105609586 105610329 -91585103 + L1Md_F2 LINE L1 5898 6582 0 1 1390 3287 142 20 12 chr1 105610329 105610501 -91584931 + L1_Mm LINE L1 5017 5188 -695 1 1390 2907 172 9 45 chr1 105610499 105611412 -91584020 - L1VL4 LINE L1 -2303 1256 384 1 1390 777 311 16 29 chr1 105611419 105611664 -91583768 - B4 SINE B4 -48 244 3 1 1390 267 245 21 24 chr1 105611721 105611817 -91583615 + Lx8 LINE L1 6887 6984 -489 1 1390 465 112 18 27 chr1 105611820 105611930 -91583502 + (CAAA)n Simple_repeat Simple_repeat 2 110 0 2 1390 973 305 41 31 chr1 105611969 105612382 -91583050 + Lx8 LINE L1 7038 7454 -19 1 1390 309 351 24 19 chr1 105612494 105612706 -91582726 + L1M2 LINE L1 5543 5755 -545 2 1390 12160 154 28 15 chr1 105612728 105614388 -91581044 + L1VL2 LINE L1 60 1724 -1891 2 1390 252 0 0 0 chr1 105614388 105614416 -91581016 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1390 12160 130 11 20 chr1 105614416 105615680 -91579752 + L1VL2 LINE L1 1725 2999 -616 2 1390 680 116 0 0 chr1 105615664 105615776 -91579656 + L1VL2 LINE L1 1247 1358 -2257 2 1390 370 206 45 36 chr1 105615937 105616048 -91579384 - MERVL_2A-int LTR ERVL -5649 112 1 2 1390 885 256 32 3 chr1 105616122 105616411 -91579021 - MT2A LTR ERVL -95 506 84 2 1390 693 319 52 83 chr1 105616521 105616907 -91578525 + MTE2a LTR MaLR 6 379 0 2 1390 439 337 54 11 chr1 105617089 105617275 -91578157 - ID_B1 SINE B4 -29 195 2 2 1390 402 366 86 0 chr1 105618164 105618339 -91577093 - B4A SINE B4 -70 222 33 2 1390 387 89 0 0 chr1 105618544 105618600 -91576832 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1390 355 288 116 11 chr1 105618617 105618793 -91576639 + Lx9 LINE L1 6333 6523 -1121 2 1390 217 265 0 0 chr1 105618800 105618849 -91576583 + B2_Mm2 SINE B2 1 49 -146 2 1390 2742 147 50 5 chr1 105619028 105619735 -91575697 - L1_Mur2 LINE L1 -4094 1783 1043 2 1390 5017 113 5 33 chr1 105619735 105620465 -91574967 - L1_Mus2 LINE L1 0 6566 5860 2 1390 530 15 15 0 chr1 105620465 105620532 -91574900 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1390 5017 113 5 33 chr1 105620532 105620589 -91574843 - L1_Mus2 LINE L1 -707 5859 5802 2 1390 1702 48 0 0 chr1 105620803 105621013 -91574419 + L1Md_T LINE L1 6371 6580 -2 2 1390 317 281 48 12 chr1 105621523 105621606 -91573826 + ID_B1 SINE B4 80 165 -59 2 1390 276 260 58 29 chr1 105621531 105621634 -91573798 - YREP_Mm Unknown Unknown -1502 310 205 2 1390 681 288 16 37 chr1 105621742 105621933 -91573499 + B3 SINE B2 1 187 -29 2 1390 23 33 0 0 chr1 105621970 105622000 -91573432 + AT_rich Low_complexity Low_complexity 1 30 0 2 1390 228 247 178 11 chr1 105622012 105622102 -91573330 + Lx8 LINE L1 7246 7350 -123 2 1390 1374 81 21 0 chr1 105622267 105622453 -91572979 + B2_Mm1t SINE B2 1 190 -3 2 1390 28 61 0 0 chr1 105622647 105622696 -91572736 + AT_rich Low_complexity Low_complexity 1 49 0 2 1390 444 82 0 0 chr1 105623065 105623126 -91572306 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1390 373 252 126 0 chr1 105623192 105623295 -91572137 - B1F1 SINE Alu -25 124 9 2 1390 509 257 180 26 chr1 105623789 105624017 -91571415 - ORR1D2-int LTR MaLR -1529 263 1 2 1390 888 304 103 18 chr1 105624017 105624358 -91571074 - ORR1D2 LTR MaLR 0 370 1 2 1390 361 215 0 13 chr1 105624529 105624614 -91570818 + Lx4A LINE L1 6667 6750 -250 2 1390 22 35 0 0 chr1 105624873 105624902 -91570530 + AT_rich Low_complexity Low_complexity 1 29 0 2 1390 6953 52 1 6 chr1 105626153 105627022 -91568410 - L1Md_F2 LINE L1 -12 6570 5706 2 1390 658 296 0 11 chr1 105627392 105627566 -91567866 + MTE2a LTR MaLR 9 180 -199 2 1390 29 0 0 0 chr1 105627983 105628012 -91567420 + AT_rich Low_complexity Low_complexity 1 29 0 2 1390 214 328 0 0 chr1 105628522 105628583 -91566849 - MIRc SINE MIR -130 138 78 2 1390 331 298 24 0 chr1 105628965 105629043 -91566389 - B4A SINE B4 -6 286 207 2 1390 1167 258 45 72 chr1 105629043 105629402 -91566030 - ORR1D1 LTR MaLR 0 374 26 2 1390 284 377 0 9 chr1 105629481 105629588 -91565844 - B4 SINE B4 -169 123 18 2 1390 407 155 0 10 chr1 105630433 105630537 -91564895 + CT-rich Low_complexity Low_complexity 1 103 0 2 1390 318 26 0 0 chr1 105630537 105630576 -91564856 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1390 309 51 0 0 chr1 105632008 105632047 -91563385 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1390 450 0 0 0 chr1 105632201 105632251 -91563181 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2 1390 2453 131 27 22 chr1 105632441 105632848 -91562584 + RLTR9E LTR ERVK 1 409 0 2 1390 331 198 53 42 chr1 105633082 105633177 -91562255 + L1_Mur1 LINE L1 738 833 -6151 2 1390 2754 169 74 7 chr1 105633306 105634325 -91561107 + L1_Mur1 LINE L1 750 1833 -4053 2 1390 460 316 9 0 chr1 105634346 105634460 -91560972 - B3A SINE B2 -24 174 60 2 1390 441 0 0 0 chr1 105634512 105634561 -91560871 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 1390 243 220 0 119 chr1 105634564 105634631 -91560801 - Lx3B LINE L1 -87 6886 6828 2 1390 504 302 175 14 chr1 105634665 105634871 -91560561 + B4A SINE B4 1 239 -53 2 1390 339 65 0 0 chr1 105634962 105635008 -91560424 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1390 22 35 0 0 chr1 105635502 105635531 -91559901 + AT_rich Low_complexity Low_complexity 1 29 0 2 1390 485 311 74 0 chr1 105635719 105635867 -91559565 + ID_B1 SINE B4 8 166 -58 2 1390 724 128 25 6 chr1 105636026 105636183 -91559249 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 2 1390 1633 195 32 57 chr1 105636183 105636586 -91558846 - RLTR9C LTR ERVK 0 393 1 2 1390 490 107 0 0 chr1 105636586 105636661 -91558771 - MMETn-int LTR ERVK -1 7405 7331 2 1390 3890 197 32 55 chr1 105636876 105638487 -91556945 - MMETn-int LTR ERVK -1998 3408 2356 2 1390 25620 73 2 2 chr1 105638487 105642630 -91552802 - L1Md_F2 LINE L1 -2 6583 2438 2 1390 2012 147 8 8 chr1 105642617 105642980 -91552452 - L1Md_F2 LINE L1 -6032 490 128 2 1390 2597 127 39 5 chr1 105642983 105643417 -91552015 - ETnERV2-int LTR ERVK -3516 3890 3442 2 1390 225 0 0 0 chr1 105643569 105643594 -91551838 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1390 1153 68 0 0 chr1 105643594 105643741 -91551691 - B1_Mus1 SINE Alu 0 148 2 2 1391 903 152 0 18 chr1 105644150 105644318 -91551114 - RLTR13D1 LTR ERVK -156 650 486 2 1391 3662 232 101 59 chr1 105644319 105645229 -91550203 - MMETn-int LTR ERVK -5321 2085 988 2 1391 183 42 0 0 chr1 105645229 105645253 -91550179 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1391 3662 177 98 55 chr1 105645253 105645768 -91549664 - MMETn-int LTR ERVK -5786 1620 1097 2 1391 467 264 52 100 chr1 105645746 105646075 -91549357 - MMETn-int LTR ERVK -4522 322 10 2 1391 1686 168 57 91 chr1 105646084 105646491 -91548941 - RLTR9C LTR ERVK 0 393 1 2 1391 1185 65 0 0 chr1 105646497 105646652 -91548780 + (GAAA)n Simple_repeat Simple_repeat 1 155 0 2 1391 3567 65 0 0 chr1 105646834 105647282 -91548150 - L1Md_F2 LINE L1 -329 6253 5804 2 1391 1224 50 0 0 chr1 105647282 105647443 -91547989 + L1Md_F2 LINE L1 6410 6570 -12 2 1391 402 212 40 56 chr1 105647443 105647466 -91547966 - L1Md_F2 LINE L1 -1657 5803 5781 2 1391 234 0 0 0 chr1 105647602 105647628 -91547804 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1391 279 0 0 0 chr1 105647762 105647793 -91547639 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2 1391 370 335 175 6 chr1 105647793 105647970 -91547462 - B3 SINE B2 -9 207 1 2 1391 23 0 0 0 chr1 105647972 105647995 -91547437 + AT_rich Low_complexity Low_complexity 1 23 0 2 1391 287 310 59 44 chr1 105648304 105648439 -91546993 - B1F SINE Alu -1 148 12 2 1391 576 331 6 11 chr1 105648319 105648499 -91546933 - ID_B1 SINE B4 -14 210 32 2 1391 227 295 33 0 chr1 105648448 105648509 -91546923 - ID4_ SINE ID -2 81 19 2 1391 477 386 83 13 chr1 105648789 105649101 -91546331 + MTD LTR MaLR 1 334 -85 2 1391 182 37 37 0 chr1 105649404 105649431 -91546001 + (TTA)n Simple_repeat Simple_repeat 3 30 0 2 1391 306 0 0 0 chr1 105649437 105649471 -91545961 + (CTA)n Simple_repeat Simple_repeat 2 35 0 2 1391 2905 59 203 9 chr1 105649471 105649899 -91545533 + RLTR1B LTR ERV1 2 512 0 2 1391 794 299 78 32 chr1 105649979 105650287 -91545145 - ORR1E LTR MaLR -34 325 4 2 1391 216 0 0 0 chr1 105650404 105650428 -91545004 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1391 743 294 98 52 chr1 105650475 105650849 -91544583 - MTE2a LTR MaLR 0 379 18 2 1391 234 326 11 33 chr1 105651385 105651477 -91543955 + MLT1A1 LTR MaLR 287 376 -32 2 1391 296 402 31 0 chr1 105652917 105653044 -91542388 - RSINE1 SINE B4 -26 139 9 2 1391 671 321 108 72 chr1 105653054 105653564 -91541868 + MT2A LTR ERVL 6 533 0 2 1391 867 306 74 37 chr1 105653691 105654095 -91541337 - MTD LTR MaLR 0 419 1 2 1391 654 173 0 0 chr1 105654521 105654631 -91540801 + ORR1B1 LTR MaLR 277 386 -8 2 1391 234 306 122 0 chr1 105654627 105654725 -91540707 - MTC LTR MaLR -299 122 13 2 1391 608 337 16 5 chr1 105654826 105655020 -91540412 + B3A SINE B2 2 197 -1 2 1391 29 28 0 0 chr1 105655407 105655443 -91539989 + AT_rich Low_complexity Low_complexity 1 36 0 2 1391 230 316 342 0 chr1 105655570 105655719 -91539713 - B4 SINE B4 -12 280 81 2 1391 398 305 0 0 chr1 105655858 105655953 -91539479 + B4 SINE B4 5 99 -193 2 1391 444 19 0 0 chr1 105656019 105656072 -91539360 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1391 248 284 14 29 chr1 105656344 105656413 -91539019 - B3 SINE B2 -70 146 79 2 1391 576 53 0 0 chr1 105656948 105657024 -91538408 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1391 587 315 49 15 chr1 105657027 105657291 -91538141 - B4A SINE B4 -18 274 2 2 1391 780 316 19 78 chr1 105658044 105658353 -91537079 + B4A SINE B4 2 292 0 2 1391 185 196 18 0 chr1 105658357 105658413 -91537019 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1391 670 142 118 32 chr1 105658436 105658627 -91536805 - RMER17C-int LTR ERVK -1693 1545 1276 2 1391 2258 194 164 46 chr1 105659563 105660174 -91535258 - RMER17C-int LTR ERVK -2548 690 8 2 1391 1649 168 8 136 chr1 105660182 105660652 -91534780 - RMER17C LTR ERVK 0 410 1 2 1391 576 376 39 4 chr1 105660652 105660902 -91534530 - B4 SINE B4 -31 261 3 2 1391 280 314 39 62 chr1 105660905 105661034 -91534398 + MLT2F LTR ERVL 15 140 -523 2 1391 2301 251 71 33 chr1 105661132 105661713 -91533719 - RMER20B LTR ERVK -24 603 1 2 1391 243 279 128 0 chr1 105662033 105662119 -91533313 + RSINE1 SINE B4 38 134 -31 2 1391 23 78 0 0 chr1 105662136 105662187 -91533245 + AT_rich Low_complexity Low_complexity 1 51 0 2 1391 25 51 0 0 chr1 105663291 105663330 -91532102 + AT_rich Low_complexity Low_complexity 1 39 0 2 1391 232 261 58 0 chr1 105663519 105663588 -91531844 + L1M5 LINE L1 2544 2616 -3530 2 1391 683 305 15 3 chr1 105664217 105664420 -91531012 + B3A SINE B2 6 210 -6 2 1391 261 216 45 11 chr1 105664571 105664660 -91530772 + L1M5 LINE L1 2917 3008 -3138 2 1391 23 33 0 0 chr1 105665072 105665102 -91530330 + AT_rich Low_complexity Low_complexity 1 30 0 2 1391 3004 84 17 0 chr1 105665211 105665625 -91529807 - BGLII LTR ERVK 0 421 1 2 1391 216 0 0 0 chr1 105665808 105665832 -91529600 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1391 1033 102 0 7 chr1 105665839 105665987 -91529445 - B1_Mus1 SINE Alu 0 148 2 3 1391 1432 132 113 0 chr1 105665987 105666244 -91529188 - ORR1A4 LTR MaLR -43 286 1 3 1391 436 384 32 50 chr1 105666829 105667111 -91528321 + B4 SINE B4 4 280 -12 3 1391 195 254 0 0 chr1 105667123 105667186 -91528246 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1391 319 258 43 0 chr1 105667214 105667307 -91528125 + L1M5 LINE L1 5198 5294 -852 2 1391 240 35 0 0 chr1 105667423 105667452 -91527980 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1391 8060 40 6 2 chr1 105667471 105668628 -91526804 - L1Md_F2 LINE L1 -12 6570 5411 3 1391 370 351 53 14 chr1 105668680 105668888 -91526544 + L1M5 LINE L1 5273 5488 -674 2 1391 817 279 92 25 chr1 105669760 105669999 -91525433 + B4 SINE B4 37 291 -1 3 1391 994 284 65 14 chr1 105670496 105670771 -91524661 + MTEb LTR MaLR 5 293 -86 3 1391 227 240 0 0 chr1 105670773 105670823 -91524609 + CT-rich Low_complexity Low_complexity 2 51 0 3 1391 938 126 17 11 chr1 105670826 105670866 -91524566 + polypyrimidine Low_complexity Low_complexity 139 178 0 3 1391 1132 97 11 6 chr1 105670866 105671043 -91524389 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1391 938 126 17 11 chr1 105671043 105671179 -91524253 + polypyrimidine Low_complexity Low_complexity 1 138 0 3 1391 216 373 33 17 chr1 105671761 105671881 -91523551 + MER5B DNA MER1_type 54 175 -3 3 1391 476 342 13 0 chr1 105672156 105672314 -91523118 - Lx8 LINE L1 -204 7269 7110 3 1391 571 269 21 0 chr1 105672322 105672467 -91522965 + MLT2B4 LTR ERVL 1 148 -408 3 1391 201 108 0 0 chr1 105672702 105672739 -91522693 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1391 1641 174 104 3 chr1 105672749 105673066 -91522366 + ORR1C1 LTR MaLR 16 364 -14 3 1391 468 62 0 0 chr1 105673073 105673137 -91522295 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1391 649 288 56 56 chr1 105673169 105673401 -91522031 - B4A SINE B4 -60 232 1 3 1391 248 120 20 0 chr1 105673433 105673483 -91521949 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1391 387 0 0 0 chr1 105675939 105675982 -91519450 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1391 1140 71 111 12 chr1 105676949 105677120 -91518312 - L1_Mus1 LINE L1 0 6567 6380 3 1391 380 279 8 44 chr1 105677532 105677784 -91517648 + GA-rich Low_complexity Low_complexity 1 242 0 3 1391 493 141 16 0 chr1 105677799 105677891 -91517541 + Lx3_Mus LINE L1 5788 5883 -1175 3 1391 276 30 0 0 chr1 105677943 105677976 -91517456 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1391 429 337 75 35 chr1 105677984 105678331 -91517101 - Lx9 LINE L1 -533 7111 6751 3 1391 2425 292 43 25 chr1 105678364 105679262 -91516170 + Lx7 LINE L1 6518 7432 -264 3 1391 330 26 0 0 chr1 105679263 105679302 -91516130 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1391 483 226 33 150 chr1 105679458 105679663 -91515769 - ORR1D-int LTR MaLR -854 516 336 3 1391 1163 48 0 20 chr1 105679663 105679813 -91515619 + B1_Mm SINE Alu 1 147 0 3 1391 300 111 0 0 chr1 105679820 105679865 -91515567 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1391 416 281 23 0 chr1 105679865 105679993 -91515439 - ORR1D-int LTR MaLR -1022 348 218 3 1391 3211 138 11 16 chr1 105680141 105680860 -91514572 - Lx3B LINE L1 -913 6060 5347 3 1391 923 204 35 105 chr1 105680860 105681145 -91514287 + RMER5 LTR ERV1 259 523 -11 3 1391 231 36 0 0 chr1 105681848 105681876 -91513556 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 1391 352 274 26 62 chr1 105682070 105682183 -91513249 + RSINE1 SINE B4 56 164 -1 3 1391 22 70 0 0 chr1 105682437 105682480 -91512952 + AT_rich Low_complexity Low_complexity 1 43 0 3 1391 1013 76 23 0 chr1 105682768 105682900 -91512532 + B1_Mus2 SINE Alu 1 135 -12 3 1391 342 0 0 0 chr1 105682905 105682943 -91512489 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1391 450 336 40 53 chr1 105683357 105683583 -91511849 - RMER12 LTR ERVK 0 1322 1100 3 1391 2948 218 218 50 chr1 105683803 105683850 -91511582 - RLTR22_Mur LTR ERVK -323 1525 1479 3 1391 240 35 0 0 chr1 105683850 105683879 -91511553 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1391 2948 218 218 50 chr1 105683879 105684001 -91511431 - RLTR22_Mur LTR ERVK -370 1478 1333 3 1391 387 0 0 0 chr1 105684001 105684044 -91511388 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1391 435 19 0 0 chr1 105684046 105684098 -91511334 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1391 2948 218 218 50 chr1 105684098 105684411 -91511021 - RLTR22_Mur LTR ERVK -516 1332 868 3 1391 1055 108 0 0 chr1 105684411 105684559 -91510873 + B1_Mus1 SINE Alu 1 148 0 3 1391 2948 218 218 50 chr1 105684559 105684985 -91510447 - RLTR22_Mur LTR ERVK -981 867 434 3 1391 504 105 35 0 chr1 105684985 105685071 -91510361 + L1_Mus2 LINE L1 6478 6566 0 3 1391 2948 218 218 50 chr1 105685071 105685435 -91509997 - RLTR22_Mur LTR ERVK -1415 433 27 3 1391 462 36 0 0 chr1 105685435 105685491 -91509941 + (TTA)n Simple_repeat Simple_repeat 2 57 0 3 1391 2948 218 218 50 chr1 105685491 105685503 -91509929 - RLTR22_Mur LTR ERVK -1822 26 20 3 1391 18065 211 36 34 chr1 105685662 105687847 -91507585 + Lx5 LINE L1 896 3058 -2819 3 1391 1030 96 0 17 chr1 105687847 105688028 -91507404 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1391 18065 209 31 39 chr1 105688028 105688813 -91506619 + Lx5 LINE L1 3059 3839 -2038 3 1391 342 0 0 0 chr1 105688813 105688851 -91506581 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1391 18065 209 31 39 chr1 105688851 105689273 -91506159 + Lx5 LINE L1 3840 4274 -1603 3 1391 411 21 0 0 chr1 105689273 105689321 -91506111 + (CATA)n Simple_repeat Simple_repeat 2 49 0 3 1391 18065 207 67 27 chr1 105689321 105691984 -91503448 + Lx5 LINE L1 4275 7047 -3 3 1391 201 133 0 0 chr1 105692517 105692547 -91502885 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1391 934 241 23 5 chr1 105693239 105693460 -91501972 + URR1A DNA MER1_type 1 225 -1 3 1391 244 261 116 55 chr1 105693614 105693760 -91501672 + MER67D LTR ERV1 1 155 -359 3 1391 543 248 79 2 chr1 105693764 105693989 -91501443 - L1MA6 LINE L1 -1 6299 6063 3 1391 274 333 99 0 chr1 105694266 105694377 -91501055 + MTD LTR MaLR 46 167 -252 3 1391 22 35 0 0 chr1 105694541 105694570 -91500862 + AT_rich Low_complexity Low_complexity 1 29 0 3 1391 770 291 129 25 chr1 105694896 105695259 -91500173 - Lx8 LINE L1 -7 7466 7066 3 1391 314 330 32 70 chr1 105695347 105695533 -91499899 - B3A SINE B2 -15 183 5 3 1391 274 218 0 0 chr1 105695539 105695594 -91499838 - Lx8 LINE L1 -457 7016 6962 3 1391 216 247 40 27 chr1 105695594 105695669 -91499763 + MIRb SINE MIR 132 207 -61 3 1391 320 0 0 83 chr1 105695778 105695838 -91499594 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 3 1391 795 87 0 0 chr1 105695923 105696049 -91499383 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 1391 480 81 0 0 chr1 105696414 105696488 -91498944 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1391 1733 155 14 0 chr1 105696605 105696882 -91498550 - Lx5 LINE L1 -548 6502 6222 3 1391 180 0 0 0 chr1 105696909 105696929 -91498503 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1391 1946 240 48 24 chr1 105696929 105697039 -91498393 + Lx5 LINE L1 6532 6638 -412 3 1391 2026 166 30 22 chr1 105697039 105697445 -91497987 - RLTR9E LTR ERVK 0 409 1 3 1391 1946 240 48 24 chr1 105697445 105697838 -91497594 + Lx5 LINE L1 6639 7047 -3 3 1391 2461 63 0 3 chr1 105698012 105698331 -91497101 - L1_Mus1 LINE L1 -1 6566 6249 3 1391 576 335 17 6 chr1 105699938 105700112 -91495320 + B3A SINE B2 1 176 -22 3 1391 30 27 0 0 chr1 105700127 105700164 -91495268 + AT_rich Low_complexity Low_complexity 1 37 0 3 1391 450 345 49 13 chr1 105701802 105702028 -91493404 + MLT2B1 LTR ERVL 332 565 -2 3 1391 853 178 0 7 chr1 105702529 105702676 -91492756 - B1_Mus1 SINE Alu -1 147 2 3 1391 486 280 62 62 chr1 105702685 105702864 -91492568 + ORR1D1 LTR MaLR 3 181 -193 3 1391 390 222 0 0 chr1 105702866 105702992 -91492440 + CT-rich Low_complexity Low_complexity 1 126 0 3 1391 643 251 67 67 chr1 105702992 105703201 -91492231 + ORR1D1 LTR MaLR 166 374 0 3 1391 1164 49 7 0 chr1 105703414 105703558 -91491874 + B1_Mus2 SINE Alu 3 147 0 3 1391 238 0 53 26 chr1 105703558 105703596 -91491836 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1391 324 0 0 0 chr1 105703596 105703632 -91491800 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1391 216 250 0 0 chr1 105703755 105703795 -91491637 + polypyrimidine Low_complexity Low_complexity 1 40 0 3 1391 508 357 0 0 chr1 105703795 105703938 -91491494 - ID_B1 SINE B4 0 224 82 3 1391 7187 96 2 10 chr1 105704243 105704803 -91490629 - L1Md_F2 LINE L1 -14 6568 6019 3 1391 347 0 23 0 chr1 105704803 105704846 -91490586 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1391 7187 94 2 6 chr1 105704846 105705587 -91489845 - L1Md_F2 LINE L1 -564 6018 5277 3 1391 492 272 58 45 chr1 105705732 105705886 -91489546 + RSINE1 SINE B4 6 161 -4 3 1391 22 0 0 0 chr1 105706607 105706629 -91488803 + AT_rich Low_complexity Low_complexity 1 22 0 3 1391 381 318 51 16 chr1 105707386 105707554 -91487878 + B3A SINE B2 44 216 0 3 1391 23 0 0 0 chr1 105707663 105707686 -91487746 + AT_rich Low_complexity Low_complexity 1 23 0 3 1391 270 341 0 0 chr1 105707767 105707852 -91487580 + Tigger5 DNA MER2_type 50 134 -2272 3 1391 480 302 33 47 chr1 105707897 105708112 -91487320 + Tigger5 DNA MER2_type 2194 2405 -1 3 1391 2601 96 104 27 chr1 105708186 105708627 -91486805 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1391 3883 100 2 2 chr1 105708727 105709269 -91486163 + L1Md_F2 LINE L1 6019 6560 -22 3 1391 681 13 0 0 chr1 105709269 105709347 -91486085 + (GAA)n Simple_repeat Simple_repeat 2 79 0 3 1391 195 331 77 82 chr1 105710159 105710353 -91485079 + MIRb SINE MIR 47 239 -29 3 1391 273 242 61 81 chr1 105710606 105710705 -91484727 + RLTR25B LTR ERVK 413 509 -519 3 1391 644 87 0 11 chr1 105710645 105710738 -91484694 + B1_Mus2 SINE Alu 46 137 -10 3 1391 402 21 0 0 chr1 105710738 105710785 -91484647 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1391 1368 169 12 0 chr1 105710987 105711241 -91484191 + L1_Mur1 LINE L1 712 968 -6016 3 1391 11806 120 15 19 chr1 105711218 105713142 -91482290 + L1_Mur1 LINE L1 3967 5882 -4 3 1391 843 118 8 0 chr1 105713147 105713266 -91482166 + Lx3_Mus LINE L1 6348 6467 -542 3 1391 1484 156 8 0 chr1 105713263 105713506 -91481926 + Lx3_Mus LINE L1 6737 6981 -28 3 1391 25 0 0 0 chr1 105713526 105713551 -91481881 + AT_rich Low_complexity Low_complexity 1 25 0 3 1391 1077 140 0 0 chr1 105713578 105713756 -91481676 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1391 24 77 0 0 chr1 105715024 105715076 -91480356 + AT_rich Low_complexity Low_complexity 1 52 0 3 1391 354 336 39 0 chr1 105715274 105715402 -91480030 - ID_B1 SINE B4 -8 216 84 3 1391 475 331 80 30 chr1 105715680 105715942 -91479490 - Lx8 LINE L1 -4 7469 7195 3 1391 499 307 74 21 chr1 105716301 105716637 -91478795 - L1_Mur3 LINE L1 -3999 1881 1528 3 1391 21 36 0 0 chr1 105716793 105716821 -91478611 + AT_rich Low_complexity Low_complexity 1 28 0 4 1391 423 0 0 0 chr1 105716974 105717021 -91478411 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1391 372 351 48 41 chr1 105717095 105717410 -91478022 - Lx8 LINE L1 -221 7252 6936 4 1391 260 102 20 0 chr1 105717633 105717682 -91477750 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1391 275 366 59 78 chr1 105718972 105719292 -91476140 + RLTR25A LTR ERVK 1 314 -789 4 1391 1218 248 107 93 chr1 105720311 105720746 -91474686 + RMER15 LTR ERVL 31 447 -128 4 1391 243 0 0 0 chr1 105720746 105720773 -91474659 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 4 1391 1218 248 107 93 chr1 105720773 105720861 -91474571 + RMER15 LTR ERVL 448 560 -15 4 1391 27 87 0 0 chr1 105721149 105721218 -91474214 + AT_rich Low_complexity Low_complexity 1 69 0 4 1391 22 35 0 0 chr1 105721759 105721788 -91473644 + AT_rich Low_complexity Low_complexity 1 29 0 4 1391 198 0 0 0 chr1 105721799 105721821 -91473611 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 1391 1158 48 7 0 chr1 105721823 105721968 -91473464 - B1_Mus2 SINE Alu -1 146 1 4 1391 22 94 0 0 chr1 105721968 105722032 -91473400 + AT_rich Low_complexity Low_complexity 1 64 0 4 1391 1009 304 99 13 chr1 105723209 105723952 -91471480 + L1M4 LINE L1 2161 2953 -3193 4 1391 21 0 0 0 chr1 105724147 105724168 -91471264 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 350 197 0 0 chr1 105724663 105724724 -91470708 + tRNA-Gly-GGG tRNA tRNA 14 74 0 4 1391 1599 193 192 21 chr1 105724726 105725107 -91470325 - RLTR41 LTR ERV1 0 446 1 4 1391 191 61 0 29 chr1 105725180 105725214 -91470218 + (CATA)n Simple_repeat Simple_repeat 2 34 0 4 1391 813 106 29 29 chr1 105725305 105725556 -91469876 + (CATA)n Simple_repeat Simple_repeat 1 250 0 4 1391 483 118 0 0 chr1 105725589 105725665 -91469767 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1391 348 289 184 34 chr1 105725675 105725822 -91469610 - B3A SINE B2 -29 169 1 4 1391 308 269 40 27 chr1 105727408 105727557 -91467875 - MER33 DNA MER1_type -46 278 128 4 1391 321 264 45 173 chr1 105728077 105728279 -91467153 - RLTR23 LTR ERV1 0 430 255 4 1391 1313 248 54 10 chr1 105728256 105728643 -91466789 + RLTR22_Mur LTR ERVK 410 813 -1035 4 1391 376 250 102 0 chr1 105728709 105728817 -91466615 + RLTR22_Mus LTR ERVK 1542 1660 -148 4 1391 21 57 0 0 chr1 105729572 105729607 -91465825 + AT_rich Low_complexity Low_complexity 1 35 0 4 1391 198 71 0 0 chr1 105729766 105729794 -91465638 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1391 473 353 53 23 chr1 105729801 105730100 -91465332 - Lx8 LINE L1 -163 7310 7003 4 1391 8030 113 64 9 chr1 105730155 105731716 -91463716 + Lx3_Mus LINE L1 5349 6992 -17 4 1391 23 33 0 0 chr1 105731720 105731750 -91463682 + AT_rich Low_complexity Low_complexity 1 30 0 4 1391 259 309 10 50 chr1 105731838 105731937 -91463495 + Lx8 LINE L1 6334 6428 -1045 4 1391 246 356 11 0 chr1 105732131 105732221 -91463211 + B1_Mur1 SINE Alu 32 122 -27 4 1391 311 340 45 26 chr1 105732226 105732380 -91463052 + Lx9 LINE L1 6382 6538 -1106 4 1391 644 289 60 15 chr1 105733201 105733401 -91462031 - B3 SINE B2 0 216 8 4 1391 3146 111 2 12 chr1 105734025 105734511 -91460921 + L1_Mus4 LINE L1 6150 6630 -6 4 1391 22 0 0 0 chr1 105734783 105734805 -91460627 + AT_rich Low_complexity Low_complexity 1 22 0 4 1391 351 346 43 25 chr1 105735164 105735327 -91460105 + B4A SINE B4 127 292 0 4 1391 1043 295 85 35 chr1 105735659 105736295 -91459137 + Lx8 LINE L1 3143 3810 -2037 4 1391 3863 111 19 0 chr1 105736296 105737018 -91458414 - L1_Mus3 LINE L1 -490 6148 5417 4 1391 1591 119 74 11 chr1 105737016 105737250 -91458182 + L1_Mus3 LINE L1 6131 6378 -260 4 1391 180 77 0 0 chr1 105737250 105737276 -91458156 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1391 1591 161 129 47 chr1 105737276 105737441 -91457991 + L1_Mus3 LINE L1 6379 6565 -1 4 1391 360 200 0 0 chr1 105737481 105737556 -91457876 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1391 1044 294 25 16 chr1 105737556 105738005 -91457427 + Lx8 LINE L1 3832 4284 -1563 4 1391 2654 184 8 0 chr1 105738028 105738511 -91456921 + Lx4A LINE L1 6571 7057 -1 4 1391 2481 263 82 24 chr1 105738529 105739152 -91456280 + Lx8 LINE L1 4759 5428 -419 4 1391 232 27 26 26 chr1 105739152 105739190 -91456242 + (CAA)n Simple_repeat Simple_repeat 1 38 0 4 1391 2481 326 89 35 chr1 105739190 105740240 -91455192 + Lx8 LINE L1 5429 6564 -909 4 1391 522 0 0 0 chr1 105740240 105740298 -91455134 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 1391 721 357 93 40 chr1 105740298 105740343 -91455089 + Lx8 LINE L1 6565 6613 -860 4 1391 468 35 0 0 chr1 105740430 105740488 -91454944 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1391 328 268 15 23 chr1 105740489 105740619 -91454813 + GA-rich Low_complexity Low_complexity 1 129 0 4 1391 579 78 22 0 chr1 105741219 105741309 -91454123 + 4.5SRNA scRNA scRNA 1 92 -2 4 1391 1133 75 0 0 chr1 105741309 105741455 -91453977 + B1_Mus2 SINE Alu 1 146 -1 4 1391 354 98 0 0 chr1 105741456 105741507 -91453925 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1391 227 218 170 15 chr1 105741598 105741733 -91453699 - Lx9 LINE L1 -1 7643 7488 4 1391 362 203 14 0 chr1 105741755 105741829 -91453603 - Lx9 LINE L1 -211 7433 7359 4 1391 462 236 0 0 chr1 105741829 105741935 -91453497 - Lx5 LINE L1 -1122 5928 5823 4 1391 4446 184 22 84 chr1 105741936 105743141 -91452291 + L1_Mur2 LINE L1 3327 4456 -1421 4 1391 396 0 0 0 chr1 105743412 105743456 -91451976 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1391 744 325 92 46 chr1 105743493 105743926 -91451506 - RMER13A LTR ERVK -394 466 14 4 1391 618 154 37 44 chr1 105743948 105744084 -91451348 + L1_Mur2 LINE L1 4451 4585 -1292 4 1391 2649 116 44 22 chr1 105744094 105744544 -91450888 - RMER17B LTR ERVK -498 460 1 4 1391 3195 162 78 8 chr1 105744546 105745161 -91450271 - RMER17A-int LTR ERVK -2 1726 1069 4 1391 295 102 0 63 chr1 105745270 105745333 -91450099 + GA-rich Low_complexity Low_complexity 1 59 0 4 1391 544 231 56 25 chr1 105745334 105745494 -91449938 - RMER17A-int LTR ERVK -1533 195 31 4 1391 2553 171 96 20 chr1 105745506 105746040 -91449392 - RMER17B LTR ERVK 0 958 382 4 1391 618 23 34 0 chr1 105746040 105746128 -91449304 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1391 2227 238 27 34 chr1 105746154 105746749 -91448683 + L1_Mur2 LINE L1 4571 5161 -716 4 1391 3943 172 52 8 chr1 105746927 105748169 -91447263 + L1VL2 LINE L1 444 1740 -1875 4 1391 23 78 0 0 chr1 105748357 105748408 -91447024 + AT_rich Low_complexity Low_complexity 1 51 0 4 1391 21 0 0 0 chr1 105749000 105749021 -91446411 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 462 65 0 0 chr1 105749779 105749841 -91445591 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 4 1391 854 86 0 0 chr1 105749841 105749958 -91445474 - B1_Mus1 SINE Alu -11 137 21 4 1391 1247 211 59 24 chr1 105749958 105750297 -91445135 + L1_Mur3 LINE L1 4916 5266 -614 4 1391 6483 160 38 32 chr1 105750292 105751524 -91443908 + Lx3C LINE L1 5727 6966 -10 4 1391 564 56 83 0 chr1 105751540 105751684 -91443748 + (TA)n Simple_repeat Simple_repeat 2 157 0 4 1391 390 289 74 0 chr1 105751703 105751893 -91443539 + L1M2 LINE L1 2900 3103 -3040 4 1391 21 0 0 0 chr1 105752630 105752651 -91442781 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 1051 88 0 26 chr1 105752768 105752919 -91442513 + B1_Mus1 SINE Alu 2 148 0 4 1391 1964 179 16 3 chr1 105753070 105753450 -91441982 - Lx2 LINE L1 -3 6994 6610 4 1391 446 344 39 90 chr1 105754191 105754526 -91440906 - RLTR25B LTR ERVK -710 318 1 4 1391 416 309 110 39 chr1 105755151 105755333 -91440099 - B3 SINE B2 -6 210 16 4 1391 1397 76 0 0 chr1 105755618 105755803 -91439629 - L1_Mus1 LINE L1 -516 6051 5867 4 1391 3653 86 2 0 chr1 105755803 105756289 -91439143 + L1_Mus1 LINE L1 6068 6554 -13 4 1391 252 0 0 0 chr1 105756289 105756317 -91439115 + (TAA)n Simple_repeat Simple_repeat 3 30 0 4 1391 418 340 79 44 chr1 105756685 105756937 -91438495 - Lx8 LINE L1 -9 7464 7204 4 1391 20975 124 31 28 chr1 105756925 105761096 -91434336 + L1_Mur1 LINE L1 528 4740 -1146 4 1391 210 37 0 0 chr1 105761096 105761123 -91434309 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 4 1391 20975 121 24 31 chr1 105761123 105761253 -91434179 + L1_Mur1 LINE L1 4741 4858 -1028 4 1391 183 100 0 0 chr1 105761420 105761450 -91433982 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1391 273 294 12 0 chr1 105761461 105761546 -91433886 + (CCCTAA)n Simple_repeat Simple_repeat 1 86 0 4 1391 433 252 6 32 chr1 105761582 105761738 -91433694 + (CCCTAA)n Simple_repeat Simple_repeat 5 156 0 4 1391 304 268 58 19 chr1 105761768 105761873 -91433559 + (CCCTAA)n Simple_repeat Simple_repeat 3 115 0 4 1391 745 256 62 169 chr1 105761873 105761928 -91433504 + RMER6B LTR ERVK 1 55 -406 4 1391 225 0 0 0 chr1 105761928 105761953 -91433479 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1391 745 256 62 169 chr1 105761953 105762413 -91433019 + RMER6B LTR ERVK 56 461 0 4 1391 304 268 58 19 chr1 105762413 105762463 -91432969 + (CCCTAA)n Simple_repeat Simple_repeat 2 50 0 4 1391 600 27 0 0 chr1 105762709 105762783 -91432649 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1391 260 167 0 14 chr1 105763767 105763840 -91431592 + (CAA)n Simple_repeat Simple_repeat 3 74 0 4 1391 5598 92 10 28 chr1 105764934 105765754 -91429678 - RLTR13C2 LTR ERVK 0 808 4 4 1391 1212 181 199 6 chr1 105766290 105766607 -91428825 + ORR1C1 LTR MaLR 1 378 0 4 1391 479 284 14 7 chr1 105767444 105767586 -91427846 - B1_Mur1 SINE Alu -2 147 5 4 1391 688 270 160 6 chr1 105767639 105767952 -91427480 - L1MC1 LINE L1 -296 6037 5677 4 1391 734 291 68 135 chr1 105767953 105768163 -91427269 + MT2B LTR ERVL 1 201 -332 4 1391 4510 123 8 12 chr1 105768163 105768896 -91426536 - L1_Mus3 LINE L1 -5 6633 5904 4 1391 1005 250 42 75 chr1 105768896 105769256 -91426176 + MT2B LTR ERVL 202 601 0 4 1391 370 250 182 4 chr1 105769256 105769535 -91425897 - L1MC1 LINE L1 -653 5680 5347 4 1391 2342 192 32 18 chr1 105769581 105770073 -91425359 + RLTR19 LTR ERVK 1 499 0 4 1391 2013 185 32 39 chr1 105770127 105770589 -91424843 - RMER6B LTR ERVK 0 461 3 4 1391 1062 310 67 20 chr1 105770641 105771181 -91424251 + Lx8 LINE L1 6131 6695 -778 4 1391 245 256 55 79 chr1 105771222 105771243 -91424189 + RLTR25B LTR ERVK 386 403 -625 4 1391 473 287 33 47 chr1 105771243 105771393 -91424039 + B1_Mur1 SINE Alu 2 149 0 4 1391 7710 123 8 6 chr1 105771554 105773467 -91421965 - L1_Mus3 LINE L1 0 6638 4720 4 1391 1818 174 15 0 chr1 105773466 105773794 -91421638 + L1_Mus3 LINE L1 4377 4709 -1174 4 1391 277 307 99 0 chr1 105773790 105773891 -91421541 + Lx8 LINE L1 6911 7021 -452 4 1391 463 277 43 5 chr1 105774207 105774392 -91421040 - RCHARR1 DNA MER1_type -148 826 635 4 1391 1550 150 59 55 chr1 105774493 105774783 -91420649 + MT2C_Mm LTR ERVL 1 291 -184 4 173 5521 171 3 10 chr1 105774783 105775802 -91419630 - Lx LINE L1 -697 5186 4175 4 1392 5940 162 41 8 chr1 105775797 105777217 -91418215 + Lx LINE L1 5179 6640 -14 4 1392 1160 149 24 63 chr1 105777230 105777437 -91417995 + MT2C_Mm LTR ERVL 277 475 0 4 1392 1099 295 68 11 chr1 105777437 105777881 -91417551 - RCHARR1 DNA MER1_type -480 494 1 4 1392 810 98 0 0 chr1 105778369 105778481 -91416951 - L1_Mus3 LINE L1 -392 6246 6135 4 1392 2331 105 39 30 chr1 105778481 105778843 -91416589 + RLTR8 LTR ERVK 1 365 0 4 1392 17854 94 18 28 chr1 105778843 105781322 -91414110 + SRV_MM-int LTR ERVK 1 2489 -3678 4 1392 7971 34 2 0 chr1 105781322 105782270 -91413162 + L1Md_F3 LINE L1 5619 6568 -16 5 1392 17854 94 18 28 chr1 105782270 105782365 -91413067 + SRV_MM-int LTR ERVK 2490 2549 -3618 4 1392 2922 100 112 1 chr1 105782377 105783204 -91412228 + SRV_MM-int LTR ERVK 5162 6080 -87 4 1392 2539 141 27 0 chr1 105783204 105783630 -91411802 - L1_Mus4 LINE L1 -461 6515 5725 5 1392 1941 171 37 13 chr1 105783630 105784010 -91411422 + L1_Mus4 LINE L1 6245 6633 -3 5 1392 1139 77 0 0 chr1 105784068 105784211 -91411221 + B1_Mm SINE Alu 5 147 0 5 1392 288 0 0 0 chr1 105784229 105784261 -91411171 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1392 699 217 0 0 chr1 105784880 105785037 -91410395 + T-rich Low_complexity Low_complexity 1 157 0 5 1392 318 339 69 0 chr1 105785041 105785171 -91410261 - ID_B1 SINE B4 0 224 86 5 1392 6038 202 20 28 chr1 105785311 105786682 -91408750 + L1_Mm LINE L1 4390 5750 -133 5 1392 1073 80 13 0 chr1 105786677 105786827 -91408605 - L1_Mus1 LINE L1 -480 6087 5936 5 1392 36 18 0 35 chr1 105787170 105787193 -91408239 + AT_rich Low_complexity Low_complexity 1 23 0 5 1392 589 110 0 0 chr1 105787193 105787284 -91408148 + L1_Mus2 LINE L1 6476 6566 0 5 1392 36 18 0 35 chr1 105787284 105787318 -91408114 + AT_rich Low_complexity Low_complexity 1 33 0 5 1392 4402 142 10 0 chr1 105787324 105788002 -91407430 + Lx LINE L1 5739 6423 -231 5 1392 4584 112 3 24 chr1 105788004 105788724 -91406708 + L1_Mm LINE L1 4434 5138 -745 5 1392 37863 45 5 11 chr1 105788740 105794821 -91400611 - L1Md_T LINE L1 0 6582 541 5 1392 473 314 39 0 chr1 105794894 105795050 -91400382 - RMER15 LTR ERVL -17 558 397 5 1392 254 330 40 10 chr1 105795082 105795183 -91400249 - Lx8 LINE L1 -216 7257 7154 5 1392 445 317 18 18 chr1 105795206 105795373 -91400059 - Lx8 LINE L1 -273 7200 7034 5 1392 355 288 177 7 chr1 105795397 105795544 -91399888 + MLT1A0 LTR MaLR 78 249 -116 5 1392 338 319 113 28 chr1 105796920 105797133 -91398299 - LTR81B LTR ERV1? -978 415 185 5 1392 30 49 0 16 chr1 105798726 105798743 -91396689 + AT_rich Low_complexity Low_complexity 1 17 0 5 1392 416 170 9 9 chr1 105798743 105798856 -91396576 + Lx3_Mus LINE L1 6897 7009 0 5 1392 30 49 0 16 chr1 105798856 105798900 -91396532 + AT_rich Low_complexity Low_complexity 1 44 0 5 1392 507 33 0 0 chr1 105799062 105799123 -91396309 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1392 1062 268 6 144 chr1 105799252 105799605 -91395827 + ORR1D1 LTR MaLR 1 304 -70 5 1392 189 74 0 0 chr1 105799637 105799664 -91395768 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1392 1405 309 63 25 chr1 105799819 105800417 -91395015 - Lx9 LINE L1 -724 6920 6300 5 1392 511 174 10 0 chr1 105800644 105800742 -91394690 - URR1A DNA MER1_type -43 183 85 5 1392 243 88 0 0 chr1 105800743 105800777 -91394655 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1392 973 170 10 5 chr1 105800881 105801076 -91394356 + MYSERV16_I-int LTR ERVK 2053 2248 -78 5 1392 2349 230 35 38 chr1 105801139 105801714 -91393718 + RLTR20B3 LTR ERVK 1 573 -4 5 1392 277 268 99 30 chr1 105802362 105802493 -91392939 - L1MC2 LINE L1 -91 6253 6114 5 1392 2288 8 0 0 chr1 105802637 105802928 -91392504 - L1Md_T LINE L1 0 6582 6323 5 1392 401 266 29 108 chr1 105803478 105803617 -91391815 - MTD LTR MaLR -269 150 23 5 1392 583 350 11 11 chr1 105803764 105803946 -91391486 + B4A SINE B4 85 266 -26 5 1392 309 109 47 0 chr1 105804098 105804162 -91391270 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1392 1418 235 19 86 chr1 105804461 105804927 -91390505 - Lx2B LINE L1 -1 6999 6565 5 1392 1044 201 158 4 chr1 105804926 105805205 -91390227 + Lx2B LINE L1 5873 6194 -806 5 1392 509 271 15 15 chr1 105805202 105805337 -91390095 + Lx7 LINE L1 7138 7272 -424 5 1392 201 279 10 31 chr1 105805412 105805508 -91389924 + T-rich Low_complexity Low_complexity 2 95 0 5 1392 269 250 0 0 chr1 105805537 105805605 -91389827 + Lx7 LINE L1 7612 7679 -17 5 1392 1646 210 10 88 chr1 105805633 105806030 -91389402 - ORR1B1 LTR MaLR 0 394 29 5 1392 47 73 0 0 chr1 105806055 105806151 -91389281 + AT_rich Low_complexity Low_complexity 1 96 0 5 1392 1714 321 72 104 chr1 105806597 105807870 -91387562 - Lx5 LINE L1 -38 7012 5781 5 1392 213 65 0 0 chr1 105807873 105807904 -91387528 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 5 1392 17406 226 56 35 chr1 105807904 105810732 -91384700 - Lx5 LINE L1 -18 7032 4078 5 1392 411 78 0 38 chr1 105810732 105810812 -91384620 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1392 17406 206 47 39 chr1 105810812 105812853 -91382579 - Lx5 LINE L1 -1800 4077 2053 5 1392 243 0 0 0 chr1 105812853 105812880 -91382552 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1392 17406 222 40 29 chr1 105812880 105814008 -91381424 - Lx5 LINE L1 -3825 2052 920 5 1392 2328 172 67 0 chr1 105814511 105814930 -91380502 - Lx LINE L1 -8 6646 6200 5 1392 7092 171 5 1 chr1 105814938 105816484 -91378948 - Lx LINE L1 -594 6060 4511 5 1392 41121 5 0 0 chr1 105816511 105823088 -91372344 - L1Md_A LINE L1 0 6582 7 5 1392 14285 185 29 23 chr1 105823087 105827045 -91368387 - Lx LINE L1 -1356 4527 543 5 1392 1168 237 130 3 chr1 105827124 105827446 -91367986 - Lx5 LINE L1 -141 5739 5377 5 1392 243 280 111 20 chr1 105827451 105827604 -91367828 - Charlie7 DNA MER1_type -204 2408 2242 5 1392 325 202 47 12 chr1 105827866 105827951 -91367481 - Charlie7 DNA MER1_type -2198 414 327 5 1392 256 314 35 11 chr1 105828140 105828227 -91367205 - RSINE1 SINE B4 -72 93 5 5 1392 25 31 0 0 chr1 105828554 105828586 -91366846 + AT_rich Low_complexity Low_complexity 1 32 0 5 1392 198 167 0 0 chr1 105828709 105828745 -91366687 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 5 1392 336 366 49 7 chr1 105829088 105829374 -91366058 - L1MA6 LINE L1 -6 6294 5997 5 1392 340 241 38 0 chr1 105829544 105829623 -91365809 - ID4 SINE ID 0 83 2 5 1392 252 310 87 37 chr1 105829836 105829997 -91365435 - MER96B DNA hAT -173 244 76 5 1392 21 0 0 0 chr1 105830624 105830645 -91364787 + AT_rich Low_complexity Low_complexity 1 21 0 5 1392 192 111 0 0 chr1 105830707 105830743 -91364689 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 1392 195 162 0 0 chr1 105831183 105831220 -91364212 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1392 21 36 0 0 chr1 105831454 105831482 -91363950 + AT_rich Low_complexity Low_complexity 1 28 0 5 1392 200 135 27 0 chr1 105831774 105831811 -91363621 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 5 1392 8124 169 19 4 chr1 105832694 105834802 -91360630 + Lx2 LINE L1 4854 6995 -2 5 1392 1795 151 13 10 chr1 105835014 105835322 -91360110 + RLTR27 LTR ERVK 1 309 0 5 1392 300 111 0 0 chr1 105835730 105835775 -91359657 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 5 1392 497 344 2 15 chr1 105835870 105836016 -91359416 + ORR1E LTR MaLR 2 135 -259 5 1392 1631 238 181 27 chr1 105836016 105836534 -91358898 - RMER19B LTR ERVK 0 902 305 5 1392 192 27 26 51 chr1 105836563 105836602 -91358830 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1392 2798 290 48 65 chr1 105836632 105838329 -91357103 - Lx5 LINE L1 -35 7015 5362 5 1392 3898 236 132 32 chr1 105838330 105840045 -91355387 + L1_Mur2 LINE L1 973 2858 -3019 5 1392 417 319 96 24 chr1 105840079 105840246 -91355186 + ORR1E LTR MaLR 201 379 0 5 1392 927 145 0 12 chr1 105840993 105841160 -91354272 + L1Md_F2 LINE L1 6418 6582 0 5 1392 264 77 0 0 chr1 105841203 105841242 -91354190 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1392 623 310 31 50 chr1 105841468 105841790 -91353642 + MT2A LTR ERVL 45 360 -173 5 1392 324 0 0 0 chr1 105841858 105841894 -91353538 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1392 275 0 58 39 chr1 105842848 105842900 -91352532 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 5 1392 513 83 20 20 chr1 105843014 105843112 -91352320 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 5 1392 351 326 86 17 chr1 105843405 105843580 -91351852 + ORR1D1 LTR MaLR 1 187 -187 5 1392 494 108 0 12 chr1 105843580 105843664 -91351768 + (TTC)n Simple_repeat Simple_repeat 3 85 0 5 1392 371 151 0 27 chr1 105843656 105843731 -91351701 + CT-rich Low_complexity Low_complexity 1 73 0 5 1392 352 276 81 8 chr1 105843762 105843886 -91351546 + ORR1D1 LTR MaLR 241 373 -1 5 1392 216 0 0 0 chr1 105844063 105844087 -91351345 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1392 645 166 79 4 chr1 105845412 105845581 -91349851 - Lx4B LINE L1 -787 6186 6010 5 1392 2892 258 35 13 chr1 105845581 105846355 -91349077 + Lx2B LINE L1 6202 6992 -8 5 1392 180 0 0 0 chr1 105846716 105846736 -91348696 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 5 1392 306 0 0 0 chr1 105846806 105846840 -91348592 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1392 201 146 0 0 chr1 105846871 105846919 -91348513 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1392 486 125 0 0 chr1 105846951 105847031 -91348401 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1392 859 103 0 7 chr1 105848259 105848396 -91347036 - L1Md_F2 LINE L1 -14 6568 6433 5 1392 360 0 0 0 chr1 105848401 105848441 -91346991 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1392 246 143 62 38 chr1 105848779 105848859 -91346573 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1392 186 0 57 29 chr1 105848880 105848915 -91346517 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 5 1392 500 0 17 0 chr1 105848951 105849011 -91346421 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 5 1392 951 295 44 55 chr1 105849186 105849611 -91345821 - Lx7 LINE L1 -1020 6453 6040 5 1392 1228 207 34 4 chr1 105849629 105849867 -91345565 - MTC LTR MaLR 0 421 177 5 1392 200 59 0 29 chr1 105849885 105849920 -91345512 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1392 1269 172 27 5 chr1 105849931 105850153 -91345279 - RLTR17 LTR ERVK -124 568 342 5 1392 414 211 69 17 chr1 105850182 105850298 -91345134 - RMER3D-int LTR ERVK -2232 610 489 5 1392 872 262 38 55 chr1 105850430 105850895 -91344537 - RMER3D-int LTR ERVK -1991 851 52 5 1392 1626 150 4 4 chr1 105850895 105851149 -91344283 + RLTR17 LTR ERVK 316 569 -123 5 1392 5933 245 38 57 chr1 105851191 105853310 -91342122 + Lx2B LINE L1 3899 5984 -1712 5 1392 1559 280 46 10 chr1 105853405 105853966 -91341466 + Lx2B LINE L1 6048 6831 -169 5 1392 186 43 0 0 chr1 105853966 105853989 -91341443 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 5 1392 326 212 0 15 chr1 105853991 105854058 -91341374 + MTC LTR MaLR 70 135 -286 5 1392 21 36 0 0 chr1 105854058 105854086 -91341346 + AT_rich Low_complexity Low_complexity 1 28 0 5 1392 6838 235 74 35 chr1 105854168 105855253 -91340179 - L1_Mur3 LINE L1 -1365 4515 3365 5 1392 493 76 59 8 chr1 105855253 105855372 -91340060 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 1392 6838 235 74 35 chr1 105855372 105856853 -91338579 - L1_Mur3 LINE L1 -2516 3364 1849 5 1392 793 261 48 9 chr1 105856842 105857070 -91338362 + L1_Mur3 LINE L1 1668 1904 -3982 5 1392 10770 189 23 38 chr1 105857075 105857860 -91337572 + L1_Mur2 LINE L1 2438 3215 -2662 5 1392 944 70 47 0 chr1 105857860 105857988 -91337444 + B1_Mus1 SINE Alu 1 134 -14 5 1392 414 0 0 0 chr1 105857991 105858037 -91337395 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1392 10770 189 23 38 chr1 105858037 105858083 -91337349 + L1_Mur2 LINE L1 3216 3219 -2658 5 1392 240 59 0 0 chr1 105858083 105858117 -91337315 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1392 10770 189 23 38 chr1 105858117 105859804 -91335628 + L1_Mur2 LINE L1 3220 4924 -953 5 1392 1487 185 39 19 chr1 105859812 105860121 -91335311 - RLTR46 LTR ERVK -5 315 1 6 1392 1230 246 62 115 chr1 105860122 105860395 -91335037 + L1_Mur2 LINE L1 4917 5178 -699 5 1392 780 138 8 0 chr1 105860395 105860525 -91334907 + L1_Mus2 LINE L1 6435 6565 -1 6 1392 1230 246 62 115 chr1 105860525 105860973 -91334459 + L1_Mur2 LINE L1 5179 5600 -277 5 1392 33 56 0 0 chr1 105861054 105861108 -91334324 + AT_rich Low_complexity Low_complexity 1 54 0 6 1392 453 110 0 0 chr1 105861145 105861218 -91334214 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1392 654 239 34 55 chr1 105862091 105862326 -91333106 + L1_Rod LINE L1 3171 3400 -2447 6 1392 1806 174 38 83 chr1 105862554 105862999 -91332433 - RLTR23 LTR ERV1 0 430 6 6 1392 662 71 0 29 chr1 105863184 105863286 -91332146 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1392 342 371 30 0 chr1 105863308 105863440 -91331992 - RSINE1 SINE B4 -15 150 15 6 1392 347 332 65 48 chr1 105864386 105864617 -91330815 - MER67C LTR ERV1 -317 394 160 6 1392 261 344 37 37 chr1 105865658 105865794 -91329638 + MLT1H LTR MaLR 69 204 -345 6 1392 613 172 317 0 chr1 105866090 105866235 -91329197 - B2_Mm2 SINE B2 -4 191 1 6 1392 624 62 0 0 chr1 105866283 105866364 -91329068 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1392 21 82 0 0 chr1 105866364 105866413 -91329019 + AT_rich Low_complexity Low_complexity 1 49 0 6 1392 429 20 0 0 chr1 105867672 105867722 -91327710 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 6 1392 3629 269 48 13 chr1 105867900 105868832 -91326600 + Lx5 LINE L1 6079 7043 -7 6 1392 4199 186 17 36 chr1 105869107 105870033 -91325399 - Lx2A LINE L1 -356 5521 4613 6 1392 3901 133 6 1 chr1 105870027 105870695 -91324737 + Lx2A LINE L1 5517 6187 -821 6 1392 25 31 0 0 chr1 105870723 105870755 -91324677 + AT_rich Low_complexity Low_complexity 1 32 0 6 1392 2832 93 4 4 chr1 105870758 105871226 -91324206 - L1_Mus2 LINE L1 -2 6564 6002 6 1392 4328 110 9 0 chr1 105871226 105871869 -91323563 + L1_Mm LINE L1 4499 5147 -736 6 1392 487 139 0 0 chr1 105871869 105871941 -91323491 + ORR1A4 LTR MaLR 258 329 0 6 1392 219 133 0 0 chr1 105872069 105872114 -91323318 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1392 568 156 16 0 chr1 105872113 105872241 -91323191 + GA-rich Low_complexity Low_complexity 1 130 0 6 1392 626 303 0 0 chr1 105872393 105872535 -91322897 - B1_Mur3 SINE Alu -7 142 1 6 1392 22 0 0 0 chr1 105872536 105872558 -91322874 + AT_rich Low_complexity Low_complexity 1 22 0 6 1392 290 284 33 43 chr1 105874285 105874377 -91321055 + B4A SINE B4 2 92 -200 6 1392 7926 136 28 5 chr1 105874382 105875546 -91319886 - L1_Mm LINE L1 -367 5516 4317 6 1392 1631 166 108 32 chr1 105875546 105875926 -91319506 + RLTR9E LTR ERVK 1 409 0 6 1392 7926 136 28 5 chr1 105875926 105876065 -91319367 - L1_Mm LINE L1 -1567 4316 4184 6 1392 4076 158 198 0 chr1 105876059 105877009 -91318423 + L1_Mus4 LINE L1 5498 6634 -2 6 1392 4397 126 148 19 chr1 105877008 105877852 -91317580 + Lx3_Mus LINE L1 6057 7009 0 6 1392 1322 371 69 19 chr1 105878080 105879229 -91316203 + Lx8 LINE L1 6268 7473 0 6 1392 1611 244 53 48 chr1 105879230 105879584 -91315848 + Lx9 LINE L1 7067 7423 -221 6 1392 387 0 0 0 chr1 105879584 105879627 -91315805 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1392 1611 244 53 48 chr1 105879627 105879713 -91315719 + Lx9 LINE L1 7424 7510 -134 6 1392 414 0 0 0 chr1 105879713 105879759 -91315673 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 6 1392 405 39 0 0 chr1 105879759 105879810 -91315622 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1392 1611 244 53 48 chr1 105879810 105879934 -91315498 + Lx9 LINE L1 7511 7635 -9 6 1392 212 296 19 0 chr1 105879968 105880022 -91315410 + ID_B1 SINE B4 88 142 -82 6 1392 263 49 24 0 chr1 105880069 105880110 -91315322 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 6 1392 993 92 0 53 chr1 105880111 105880261 -91315171 - B1_Mus1 SINE Alu -6 142 1 6 1392 326 312 0 60 chr1 105880263 105880379 -91315053 + B4A SINE B4 184 292 0 6 1392 223 365 19 82 chr1 105881655 105881813 -91313619 - B1F1 SINE Alu 0 149 2 6 1392 342 186 0 24 chr1 105881836 105881909 -91313523 - B1_Mur3 SINE Alu -2 118 53 6 1392 285 304 10 10 chr1 105882543 105882646 -91312786 + Lx7 LINE L1 7226 7328 -368 6 1392 537 80 0 0 chr1 105882646 105882721 -91312711 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1392 3171 288 52 86 chr1 105882835 105883730 -91311702 + Lx5 LINE L1 5592 6455 -595 6 1392 195 42 0 0 chr1 105883730 105883754 -91311678 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 6 1392 3171 289 49 75 chr1 105883754 105884376 -91311056 + Lx5 LINE L1 6456 7434 -26 6 1392 634 249 94 4 chr1 105884475 105884709 -91310723 + Lx9 LINE L1 7382 7636 -8 6 1392 633 203 63 15 chr1 105884723 105884799 -91310633 + Lx9 LINE L1 7427 7512 -132 6 1392 192 111 0 0 chr1 105884799 105884835 -91310597 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1392 633 203 63 15 chr1 105884835 105884963 -91310469 + Lx9 LINE L1 7513 7641 -3 6 1392 4516 158 39 18 chr1 105884987 105885119 -91310313 + L1_Mur2 LINE L1 4805 4937 -940 6 1392 3457 72 42 0 chr1 105885119 105885575 -91309857 + MT2C_Mm LTR ERVL 1 475 0 6 1392 4516 158 39 18 chr1 105885575 105886288 -91309144 + L1_Mur2 LINE L1 4938 5668 -209 6 1392 595 199 92 0 chr1 105886290 105886421 -91309011 + L1_Mur2 LINE L1 5520 5662 -215 6 1392 465 118 0 0 chr1 105886439 105886515 -91308917 + L1_Mus2 LINE L1 6490 6565 -1 6 1392 293 100 20 0 chr1 105886543 105886593 -91308839 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1392 1231 239 82 3 chr1 105886593 105886887 -91308545 + ORR1D1 LTR MaLR 17 333 -41 6 1392 6004 151 82 3 chr1 105886890 105888326 -91307106 + L1_Mus1 LINE L1 4732 6265 -302 6 1392 12958 123 9 54 chr1 105888312 105889245 -91306187 - Lx3A LINE L1 -713 6268 5404 6 1392 1873 55 0 4 chr1 105889245 105889484 -91305948 - L1Md_F2 LINE L1 -12 6570 6333 6 1392 12958 116 9 82 chr1 105889484 105891140 -91304292 - Lx3A LINE L1 -483 5403 3868 6 1392 210 37 0 0 chr1 105891140 105891167 -91304265 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1392 12958 205 131 67 chr1 105891167 105893004 -91302428 - Lx3A LINE L1 -2019 3867 1474 6 1392 6331 86 28 16 chr1 105893004 105893904 -91301528 + L1Md_F2 LINE L1 5672 6582 0 6 1392 9984 218 148 65 chr1 105893904 105894133 -91301299 - Lx3A LINE L1 -4404 1473 1256 6 1392 422 61 15 0 chr1 105894133 105894199 -91301233 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 6 1392 9984 186 58 3 chr1 105894199 105894830 -91300602 - Lx3A LINE L1 -4622 1255 591 6 1392 7204 147 31 73 chr1 105894831 105896364 -91299068 - L1_Mm LINE L1 -1137 4746 3279 6 1392 234 294 86 48 chr1 105896392 105896734 -91298698 - L1M4 LINE L1 -351 5838 5485 6 1392 981 256 122 45 chr1 105896728 105897235 -91298197 - Lx9 LINE L1 -5 7639 7094 6 1392 312 291 96 54 chr1 105897240 105897407 -91298025 - L1M4 LINE L1 -687 5491 5318 6 1392 399 314 41 16 chr1 105897444 105897567 -91297865 - B1F1 SINE Alu -23 126 1 6 1392 615 287 114 19 chr1 105897589 105898115 -91297317 - L1M4 LINE L1 -836 5310 4735 6 1392 41 0 0 0 chr1 105898115 105898156 -91297276 + AT_rich Low_complexity Low_complexity 1 41 0 6 1392 306 280 85 48 chr1 105898222 105898387 -91297045 - L1M5 LINE L1 -727 5435 5265 6 1392 274 321 20 0 chr1 105898553 105898712 -91296720 - L1_Rod LINE L1 -1078 5065 4846 6 1392 4183 115 4 113 chr1 105899014 105899857 -91295575 - RMER17A LTR ERVK 0 751 1 6 1392 476 326 77 11 chr1 105899912 105900095 -91295337 - B3A SINE B2 -2 196 2 6 1392 2907 193 41 23 chr1 105900186 105900838 -91294594 - Lx3B LINE L1 -11 6962 6299 6 1392 25 0 0 0 chr1 105901339 105901364 -91294068 + AT_rich Low_complexity Low_complexity 1 25 0 6 1392 237 65 0 0 chr1 105901705 105901736 -91293696 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1392 471 35 0 0 chr1 105902319 105902376 -91293056 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1392 25 0 0 0 chr1 105902794 105902819 -91292613 + AT_rich Low_complexity Low_complexity 1 25 0 6 1392 22 0 0 0 chr1 105902885 105902907 -91292525 + AT_rich Low_complexity Low_complexity 1 22 0 6 1392 252 0 0 0 chr1 105904609 105904637 -91290795 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1392 4276 56 0 24 chr1 105904749 105905335 -91290097 + L1_Mm LINE L1 2779 3350 -2533 6 1393 339 65 0 0 chr1 105906294 105906340 -91289092 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1393 359 141 11 32 chr1 105906938 105907033 -91288399 + (TA)n Simple_repeat Simple_repeat 2 94 0 6 1393 195 42 0 0 chr1 105907095 105907119 -91288313 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1393 25 51 0 0 chr1 105907190 105907229 -91288203 + AT_rich Low_complexity Low_complexity 1 39 0 6 1393 234 0 0 0 chr1 105907515 105907541 -91287891 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1393 493 332 27 45 chr1 105907632 105907856 -91287576 - MT2A LTR ERVL -103 430 211 6 1393 302 316 134 59 chr1 105908602 105908922 -91286510 + MLT1A0 LTR MaLR 22 365 0 6 1393 28 79 0 0 chr1 105909107 105909170 -91286262 + AT_rich Low_complexity Low_complexity 1 63 0 6 1393 4530 88 6 24 chr1 105909416 105910081 -91285351 - L1Md_F2 LINE L1 0 6582 5930 6 1393 336 341 23 31 chr1 105912610 105912740 -91282692 - B3A SINE B2 -11 187 59 6 1393 6659 45 7 0 chr1 105912810 105913627 -91281805 - L1Md_T LINE L1 -15 6567 5745 6 1393 4686 77 0 8 chr1 105913627 105914244 -91281188 - L1Md_F2 LINE L1 -159 6423 5812 6 1393 1914 107 15 51 chr1 105914264 105914598 -91280834 + RLTRETN_Mm LTR ERVK 1 322 0 6 1393 234 0 0 0 chr1 105914698 105914724 -91280708 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1393 243 0 0 0 chr1 105915572 105915599 -91279833 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1393 288 0 0 0 chr1 105915885 105915917 -91279515 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1393 576 318 64 5 chr1 105915989 105916207 -91279225 + Lx8 LINE L1 6811 7041 -432 6 1393 371 252 19 19 chr1 105916722 105916827 -91278605 + Lx8 LINE L1 7032 7136 -337 6 1393 852 237 120 57 chr1 105916866 105917215 -91278217 + ORR1D1 LTR MaLR 4 374 0 6 1393 295 340 40 31 chr1 105917711 105917936 -91277496 + L1M6 LINE L1 1644 1870 -4626 6 1393 461 338 81 30 chr1 105917950 105918185 -91277247 + B4A SINE B4 24 270 -22 6 1393 513 191 0 0 chr1 105918218 105918323 -91277109 + (TA)n Simple_repeat Simple_repeat 2 106 0 6 1393 1492 153 0 0 chr1 105918540 105918762 -91276670 + Lx2 LINE L1 6356 6577 -420 6 1393 232 309 50 40 chr1 105918800 105918901 -91276531 + MLT1J1 LTR MaLR 68 169 -275 7 1393 230 266 76 45 chr1 105919821 105919992 -91275440 + MIR SINE MIR 15 197 -71 7 1393 306 73 0 0 chr1 105920454 105920495 -91274937 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 7 1393 229 261 0 0 chr1 105921419 105921465 -91273967 + MTD LTR MaLR 286 331 -88 7 1393 192 170 0 0 chr1 105921497 105921550 -91273882 + T-rich Low_complexity Low_complexity 1 53 0 7 1393 23 0 0 0 chr1 105921669 105921692 -91273740 + AT_rich Low_complexity Low_complexity 1 23 0 7 1393 372 80 0 0 chr1 105921701 105921751 -91273681 - L1Md_F2 LINE L1 -266 6316 6267 7 1393 312 224 611 71 chr1 105921756 105921913 -91273519 + ORR1D1 LTR MaLR 93 333 -51 7 1393 1151 270 316 46 chr1 105921920 105922360 -91273072 + MTD-int LTR MaLR 85 635 -623 7 1393 1004 78 8 0 chr1 105922360 105922489 -91272943 + B1_Mm SINE Alu 2 131 -16 7 1393 1151 270 316 46 chr1 105922489 105922968 -91272464 + MTD-int LTR MaLR 636 1253 -5 7 1393 1099 272 71 43 chr1 105922977 105923372 -91272060 + MTD LTR MaLR 14 419 0 7 1393 323 250 10 0 chr1 105923440 105923536 -91271896 + Lx6 LINE L1 7339 7435 -25 7 1393 240 315 125 55 chr1 105923654 105923912 -91271520 + B4A SINE B4 2 280 -12 7 1393 520 97 21 0 chr1 105923912 105924005 -91271427 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 1393 240 315 125 55 chr1 105924005 105924018 -91271414 + B4A SINE B4 281 292 0 7 1393 669 210 0 7 chr1 105924544 105924683 -91270749 - RLTR15 LTR ERVK 0 359 222 7 1393 2657 204 45 25 chr1 105924683 105925150 -91270282 + RLTR20D LTR ERVK 1 465 -103 7 1393 390 101 0 0 chr1 105925150 105925219 -91270213 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 7 1393 2657 204 45 25 chr1 105925219 105925308 -91270124 + RLTR20D LTR ERVK 466 567 -1 7 1393 510 183 0 0 chr1 105925311 105925393 -91270039 - RLTR15 LTR ERVK -135 224 143 7 1393 525 340 0 34 chr1 105925389 105925596 -91269836 + BGLII_B LTR ERVK 240 439 -2 7 1393 432 150 8 38 chr1 105925787 105925919 -91269513 + CT-rich Low_complexity Low_complexity 2 129 0 7 1393 1175 318 49 51 chr1 105926001 105926590 -91268842 - Lx5 LINE L1 -30 7430 6479 7 1393 326 324 0 0 chr1 105926594 105926696 -91268736 - Lx5 LINE L1 -694 6356 6255 7 1393 240 59 0 0 chr1 105926721 105926755 -91268677 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1393 385 315 49 12 chr1 105926767 105926931 -91268501 - Lx6 LINE L1 -1290 6170 6001 7 1393 1203 221 63 58 chr1 105926931 105927296 -91268136 + RLTR9A LTR ERVK 1 367 -1 7 1393 1557 218 30 43 chr1 105927319 105927840 -91267592 - Lx5 LINE L1 -1069 5981 5461 7 1393 2751 258 18 93 chr1 105927844 105927998 -91267434 + L1_Mur2 LINE L1 4492 4633 -1253 7 1393 1051 101 0 20 chr1 105927998 105928149 -91267283 + B1_Mus1 SINE Alu 1 148 0 7 1393 3271 231 21 26 chr1 105928149 105929046 -91266386 + L1_Mur2 LINE L1 4622 5460 -426 7 1393 1026 261 10 89 chr1 105929331 105929726 -91265706 + Lx3_Mus LINE L1 4 367 -6617 7 1393 16208 107 50 1 chr1 105929740 105932101 -91263331 + Lx3_Mus LINE L1 677 3135 -2751 7 1393 230 0 33 0 chr1 105932101 105932131 -91263301 + (CAA)n Simple_repeat Simple_repeat 2 32 0 7 1393 16208 99 21 1 chr1 105932131 105932674 -91262758 + Lx3_Mus LINE L1 3136 3695 -2191 7 1393 1477 150 11 36 chr1 105932671 105932948 -91262484 - L1_Mus3 LINE L1 -444 5439 5170 7 1393 7084 137 7 15 chr1 105932947 105933199 -91262233 + L1_Mus3 LINE L1 5458 5709 -174 7 1393 3110 39 10 3 chr1 105933199 105933584 -91261848 + RLTR10 LTR ERVK 1 388 -2 7 1393 7084 108 14 9 chr1 105933584 105934499 -91260933 + L1_Mus3 LINE L1 5710 6631 -7 7 1393 4856 120 16 0 chr1 105934498 105935287 -91260145 + Lx3_Mus LINE L1 3689 4490 -1396 7 1393 3341 175 40 39 chr1 105935287 105936037 -91259395 - RMER17A LTR ERVK 0 751 1 7 1393 9338 106 15 5 chr1 105936037 105936197 -91259235 + Lx3_Mus LINE L1 4485 4643 -1243 7 1393 360 0 0 0 chr1 105936197 105936237 -91259195 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 1393 9340 105 25 4 chr1 105936237 105938543 -91256889 + Lx3_Mus LINE L1 4644 7001 -8 7 1393 2241 212 27 25 chr1 105938669 105939192 -91256240 - RLTR11A2 LTR ERVK -3 524 1 7 1393 297 0 0 0 chr1 105939288 105939321 -91256111 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1393 327 25 0 0 chr1 105940959 105940999 -91254433 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1393 288 0 0 0 chr1 105941234 105941266 -91254166 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1393 206 231 0 0 chr1 105941715 105941754 -91253678 + GA-rich Low_complexity Low_complexity 2 40 0 7 1393 31 58 0 0 chr1 105941787 105941839 -91253593 + AT_rich Low_complexity Low_complexity 1 52 0 7 1393 22 0 0 0 chr1 105943059 105943081 -91252351 + AT_rich Low_complexity Low_complexity 1 22 0 7 1393 607 311 12 6 chr1 105943081 105943243 -91252189 + B3A SINE B2 2 164 -34 7 1393 540 42 0 0 chr1 105943248 105943319 -91252113 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1393 25 51 0 0 chr1 105943329 105943368 -91252064 + AT_rich Low_complexity Low_complexity 1 39 0 7 1393 4014 56 10 0 chr1 105943840 105944341 -91251091 - L1Md_F2 LINE L1 -275 6307 5802 7 1393 1207 99 11 11 chr1 105944341 105944525 -91250907 + L1Md_F2 LINE L1 6380 6563 -19 7 1393 532 346 10 5 chr1 105944546 105944752 -91250680 + B3 SINE B2 2 208 -8 7 1393 218 125 0 24 chr1 105944758 105944799 -91250633 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 7 1393 347 89 18 0 chr1 105945134 105945190 -91250242 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1393 207 0 0 0 chr1 105945469 105945492 -91249940 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1393 34 24 0 0 chr1 105945553 105945594 -91249838 + AT_rich Low_complexity Low_complexity 1 41 0 7 1393 235 383 0 42 chr1 105946311 105946431 -91249001 + PB1D10 SINE Alu 3 117 0 7 1393 1022 82 7 0 chr1 105946643 105946789 -91248643 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 7 1393 200 188 0 40 chr1 105946992 105947042 -91248390 + T-rich Low_complexity Low_complexity 1 48 0 7 1393 3046 180 61 11 chr1 105947709 105948316 -91247116 + Lx5 LINE L1 5891 6527 -523 7 1393 763 263 83 14 chr1 105948313 105948529 -91246903 + Lx5 LINE L1 6815 7045 -5 7 1393 768 147 32 0 chr1 105948540 105948697 -91246735 + GA-rich Low_complexity Low_complexity 3 164 0 7 1393 363 225 14 7 chr1 105949203 105949342 -91246090 + (TA)n Simple_repeat Simple_repeat 2 141 0 7 1393 343 300 71 48 chr1 105950557 105950725 -91244707 - MIR SINE MIR -54 208 37 7 1393 248 275 76 84 chr1 105950875 105950889 -91244543 + MT2B2 LTR ERVL 174 250 -334 7 1393 373 282 73 0 chr1 105950889 105950999 -91244433 + B1_Mur1 SINE Alu 21 138 -11 7 1393 21 36 0 0 chr1 105951134 105951162 -91244270 + AT_rich Low_complexity Low_complexity 1 28 0 7 1393 21 82 0 0 chr1 105951824 105951873 -91243559 + AT_rich Low_complexity Low_complexity 1 49 0 7 1393 273 314 35 0 chr1 105952103 105952189 -91243243 + Tigger5 DNA MER2_type 158 246 -2160 7 1393 233 294 0 0 chr1 105952260 105952328 -91243104 + Tigger5 DNA MER2_type 2230 2296 -110 7 1393 765 357 46 22 chr1 105952387 105952756 -91242676 - MLT2B3 LTR ERVL -174 380 3 7 1393 485 340 148 18 chr1 105953569 105953713 -91241719 + MLT1B LTR MaLR 1 172 -218 7 1393 450 0 0 0 chr1 105953713 105953763 -91241669 + (GA)n Simple_repeat Simple_repeat 2 51 0 7 1393 485 340 148 18 chr1 105953763 105953956 -91241476 + MLT1B LTR MaLR 173 381 -9 7 1393 251 176 101 14 chr1 105953896 105953965 -91241467 + Charlie21a DNA MER1_type 597 671 -542 7 1393 242 385 8 23 chr1 105954466 105954599 -91240833 + LTR16C LTR ERVL 331 461 -28 7 1393 1168 303 24 29 chr1 105954945 105955326 -91240106 + MTEb LTR MaLR 1 379 0 7 1393 575 343 33 60 chr1 105955530 105955933 -91239499 + RLTR17 LTR ERVK 75 495 -197 7 1393 1023 227 11 15 chr1 105956639 105956956 -91238476 + Lx7 LINE L1 5503 5888 -1897 7 1393 520 330 9 36 chr1 105957288 105957508 -91237924 - Lx8 LINE L1 -1020 6453 6240 7 1393 224 315 11 11 chr1 105957719 105957812 -91237620 + CT-rich Low_complexity Low_complexity 2 94 0 7 1393 1605 109 0 55 chr1 105957965 105958238 -91237194 + L1Md_F2 LINE L1 6318 6575 -7 7 1393 3313 189 61 2 chr1 105958539 105959149 -91236283 - Lx2B LINE L1 0 7000 6355 7 1393 225 0 0 0 chr1 105959229 105959254 -91236178 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1393 495 48 0 0 chr1 105959254 105959315 -91236117 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1393 5191 55 27 0 chr1 105959318 105959978 -91235454 - L1Md_F2 LINE L1 -14 6568 5891 7 1393 417 39 0 0 chr1 105960182 105960233 -91235199 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1393 344 227 36 0 chr1 105960721 105960831 -91234601 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 1393 252 86 0 0 chr1 105961341 105961376 -91234056 + (CTTTG)n Simple_repeat Simple_repeat 3 37 0 7 1393 351 89 0 0 chr1 105961488 105961544 -91233888 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1393 263 385 10 77 chr1 105961545 105961649 -91233783 - RSINE1 SINE B4 -67 98 2 7 1393 294 29 0 0 chr1 105962257 105962292 -91233140 + (TAA)n Simple_repeat Simple_repeat 1 35 0 7 1393 823 96 0 20 chr1 105962293 105962442 -91232990 + RMER17B LTR ERVK 312 457 -501 7 1393 528 0 0 40 chr1 105962444 105962519 -91232913 + (TAA)n Simple_repeat Simple_repeat 1 72 0 7 1393 285 29 0 0 chr1 105965059 105965093 -91230339 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1393 1231 286 43 12 chr1 105965139 105965485 -91229947 + MTD LTR MaLR 24 380 -39 7 1393 486 75 0 0 chr1 105965852 105965919 -91229513 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1393 680 345 17 17 chr1 105965936 105966225 -91229207 - B4 SINE B4 -2 290 2 7 1393 207 217 0 0 chr1 105966234 105966294 -91229138 + (CATA)n Simple_repeat Simple_repeat 1 60 0 7 1393 438 316 127 13 chr1 105966383 105966540 -91228892 - B3 SINE B2 -33 183 9 7 1393 3827 70 13 0 chr1 105966541 105967066 -91228366 - L1_Mm LINE L1 -1428 4455 3924 7 1393 4971 108 28 5 chr1 105967067 105967827 -91227605 + L1Md_F2 LINE L1 5805 6581 -1 7 1393 1121 146 21 5 chr1 105970490 105970676 -91224756 + B2_Mm2 SINE B2 2 190 -5 7 1393 250 269 0 0 chr1 105971065 105971117 -91224315 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 7 1393 26 30 0 0 chr1 105971242 105971275 -91224157 + AT_rich Low_complexity Low_complexity 1 33 0 7 1393 670 138 32 135 chr1 105973394 105973579 -91221853 - Lx3C LINE L1 -2 6974 6809 7 1393 885 320 31 113 chr1 105974484 105975006 -91220426 - MER97c DNA MER1_type? -348 742 264 7 1393 1117 268 73 39 chr1 105975135 105975493 -91219939 - ORR1D2 LTR MaLR 0 370 1 7 1393 24 32 0 0 chr1 105975624 105975655 -91219777 + AT_rich Low_complexity Low_complexity 1 31 0 7 1393 21 0 0 0 chr1 105975743 105975764 -91219668 + AT_rich Low_complexity Low_complexity 1 21 0 7 1393 1747 150 7 3 chr1 105975806 105976107 -91219325 + L1_Mus3 LINE L1 6337 6638 0 7 1393 23 33 0 0 chr1 105976182 105976212 -91219220 + AT_rich Low_complexity Low_complexity 1 30 0 7 1393 441 0 0 0 chr1 105976267 105976316 -91219116 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1393 1847 256 97 30 chr1 105976552 105977273 -91218159 - RCHARR1 DNA MER1_type -71 903 135 8 1393 257 163 31 39 chr1 105977276 105977404 -91218028 + T-rich Low_complexity Low_complexity 4 130 0 8 1393 720 204 7 7 chr1 105977405 105977543 -91217889 - B1_Mus2 SINE Alu -1 146 9 8 1393 361 308 42 115 chr1 105977543 105977595 -91217837 - B4 SINE B4 -67 224 49 8 1393 511 86 0 21 chr1 105977722 105977817 -91217615 + L1Md_F2 LINE L1 6488 6580 -2 8 1393 3632 128 0 0 chr1 105978364 105978887 -91216545 + Lx2 LINE L1 6474 6996 -1 8 1393 22 0 0 0 chr1 105979180 105979202 -91216230 + AT_rich Low_complexity Low_complexity 1 22 0 8 1393 1481 231 40 8 chr1 105979712 105980083 -91215349 + Lx6 LINE L1 4658 5040 -840 8 1393 424 275 24 52 chr1 105980102 105980313 -91215119 + Lx6 LINE L1 5953 6157 -1303 8 1393 435 267 9 0 chr1 105980326 105980442 -91214990 + Lx6 LINE L1 6591 6707 -753 8 1393 466 302 83 44 chr1 105980444 105980857 -91214575 + RLTR12B LTR ERVK 3 294 -65 8 1393 1891 246 8 57 chr1 105980916 105981412 -91214020 + Lx6 LINE L1 6713 7184 -276 8 1393 2052 175 23 29 chr1 105981442 105981934 -91213498 + RLTR31_Mm LTR ERVK 15 561 0 8 1393 457 312 71 0 chr1 105981990 105982131 -91213301 + Lx6 LINE L1 7235 7385 -75 8 1393 20965 22 2 1 chr1 105982145 105984635 -91210797 + L1Md_T LINE L1 3093 5586 -297 8 1393 8286 37 4 0 chr1 105984635 105985626 -91209806 + L1Md_T LINE L1 5587 6581 -1 8 1393 30 83 0 0 chr1 105985734 105985806 -91209626 + AT_rich Low_complexity Low_complexity 1 72 0 8 1393 596 279 65 11 chr1 105986476 105986661 -91208771 + B3A SINE B2 21 215 -1 8 1393 1335 65 0 0 chr1 105986791 105987069 -91208363 + (TCTA)n Simple_repeat Simple_repeat 1 278 0 8 1393 185 231 39 0 chr1 105987146 105987198 -91208234 + L2 LINE L2 1558 1611 -1808 8 1393 507 112 0 0 chr1 105987538 105987618 -91207814 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 1393 264 341 172 19 chr1 105987641 105987856 -91207576 - B4 SINE B4 -20 272 25 8 1393 775 250 224 28 chr1 105988225 105988546 -91206886 - ORR1C2 LTR MaLR 0 384 1 8 1393 205 186 0 0 chr1 105988987 105989030 -91206402 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1393 1593 171 135 3 chr1 105989405 105989768 -91205664 + L1VL4 LINE L1 443 853 -5482 8 1393 13579 187 13 20 chr1 105989797 105991647 -91203785 + L1_Mur1 LINE L1 2066 3894 -1992 8 1393 4679 39 11 2 chr1 105991647 105992220 -91203212 - L1Md_F2 LINE L1 -2 6580 6003 8 1393 13579 187 13 20 chr1 105992220 105993065 -91202367 + L1_Mur1 LINE L1 3895 4736 -1150 8 1393 495 0 0 0 chr1 105993065 105993120 -91202312 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 8 1393 13579 187 13 20 chr1 105993120 105993316 -91202116 + L1_Mur1 LINE L1 4737 4936 -950 8 1393 7326 76 5 4 chr1 105993315 105994590 -91200842 - L1Md_F2 LINE L1 0 6582 5309 8 1393 33068 81 6 6 chr1 105994592 106000000 -91195432 + L1Md_Gf LINE L1 274 5778 -108 8 1393 6008 62 23 6 chr1 106000000 106000780 -91194652 + L1Md_F2 LINE L1 5776 6568 -14 1 1393 1131 118 16 0 chr1 106000791 106000977 -91194455 - L1_Mm LINE L1 -562 5321 5133 2 1393 3729 205 36 10 chr1 106000976 106001808 -91193624 + L1_Mm LINE L1 4932 5785 -98 3 1393 6182 152 19 56 chr1 106001811 106002048 -91193384 + Lx LINE L1 5543 5744 -139 4 1393 185 0 40 0 chr1 106002048 106002073 -91193359 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1393 6182 143 24 46 chr1 106002073 106002971 -91192461 + Lx LINE L1 5745 6654 0 4 1393 7351 144 12 2 chr1 106002977 106004159 -91191273 + Lx2A LINE L1 5785 6978 -30 6 1393 326 186 0 44 chr1 106004150 106004240 -91191192 + Lx2A LINE L1 6923 7008 0 7 1393 402 74 0 0 chr1 106004356 106004410 -91191022 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 8 1393 6421 149 56 5 chr1 106005530 106006685 -91188747 - Lx2B LINE L1 -4 6996 5783 9 1393 5638 89 29 32 chr1 106006696 106007713 -91187719 - L1Md_F3 LINE L1 -10 6628 5638 1 1393 7907 189 23 84 chr1 106007760 106009416 -91186016 - L1_Mur2 LINE L1 -1242 4635 3001 1 1393 616 88 67 19 chr1 106009416 106009520 -91185912 - B1_Mus1 SINE Alu -1 147 39 1 1393 7907 189 23 84 chr1 106009520 106009850 -91185582 - L1_Mur2 LINE L1 -1242 3000 2674 1 1393 297 0 0 0 chr1 106009856 106009889 -91185543 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1393 486 298 86 105 chr1 106009889 106010225 -91185207 + RMER12 LTR ERVK 947 1221 -101 1 1393 351 304 55 27 chr1 106010459 106010624 -91184808 - MTEb LTR MaLR -15 364 180 1 1393 365 252 44 75 chr1 106010632 106010791 -91184641 + RMER13B LTR ERVK 1 154 -754 1 1393 1004 278 70 33 chr1 106011178 106011576 -91183856 - MTD LTR MaLR -2 417 5 1 1393 1845 238 33 7 chr1 106011616 106012039 -91183393 + Lx6 LINE L1 7005 7438 -22 1 1393 21 0 0 0 chr1 106012039 106012060 -91183372 + AT_rich Low_complexity Low_complexity 1 21 0 1 1393 25 0 0 0 chr1 106012585 106012610 -91182822 + AT_rich Low_complexity Low_complexity 1 25 0 2 1393 1127 245 38 0 chr1 106013786 106014051 -91181381 - RMER15 LTR ERVL 0 575 301 2 1393 2149 133 34 0 chr1 106014051 106014403 -91181029 + Lx3_Mus LINE L1 6629 6992 -17 2 1393 46 0 0 0 chr1 106014403 106014449 -91180983 + AT_rich Low_complexity Low_complexity 1 46 0 2 1393 14215 132 6 4 chr1 106014683 106017050 -91178382 + L1_Mm LINE L1 1975 4344 -1539 2 1393 899 166 181 0 chr1 106017050 106017255 -91178177 - RLTR6_Mm LTR ERV1 -67 587 346 2 1393 556 277 13 7 chr1 106017362 106017511 -91177921 - B1_Mur4 SINE Alu 0 150 1 2 1393 1401 56 0 0 chr1 106017526 106017705 -91177727 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1393 2233 114 19 22 chr1 106017721 106018089 -91177343 - L1_Mus4 LINE L1 0 6636 6270 2 1393 1028 229 129 0 chr1 106018089 106018368 -91177064 + RMER1C Other Other 1027 1341 -1 2 1393 2030 230 61 50 chr1 106018399 106019076 -91176356 + L1_Mur3 LINE L1 4750 5433 -447 3 1393 37 39 0 0 chr1 106019600 106019651 -91175781 + AT_rich Low_complexity Low_complexity 1 51 0 3 1393 1043 86 7 0 chr1 106020119 106020271 -91175161 + (GGGA)n Simple_repeat Simple_repeat 2 154 0 3 1393 1336 167 4 0 chr1 106021486 106021725 -91173707 - L1_Mm LINE L1 -392 5491 5252 3 1393 7226 100 0 10 chr1 106021737 106023183 -91172249 - L1_Mus1 LINE L1 0 6567 5137 3 1393 7136 129 3 1 chr1 106023184 106024325 -91171107 + L1_Mus3 LINE L1 5495 6638 0 3 1393 25 0 0 0 chr1 106024908 106024933 -91170499 + AT_rich Low_complexity Low_complexity 1 25 0 3 1393 345 47 0 0 chr1 106025009 106025052 -91170380 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1393 231 114 0 0 chr1 106025052 106025086 -91170346 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1393 201 209 0 0 chr1 106025092 106025159 -91170273 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1393 467 206 6 0 chr1 106025192 106025362 -91170070 + (TA)n Simple_repeat Simple_repeat 2 172 0 3 1393 236 264 0 0 chr1 106025368 106025440 -91169992 + (TTTA)n Simple_repeat Simple_repeat 4 75 0 4 1393 213 247 0 0 chr1 106025453 106025534 -91169898 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1393 21 82 0 0 chr1 106025673 106025722 -91169710 + AT_rich Low_complexity Low_complexity 1 49 0 4 1393 3361 81 8 2 chr1 106025751 106026219 -91169213 - L1_Mus2 LINE L1 -1 6565 6095 4 1393 476 247 0 0 chr1 106026231 106026324 -91169108 - Lx8 LINE L1 -1086 6387 6295 4 1393 601 294 125 37 chr1 106026330 106026602 -91168830 + Lx8 LINE L1 6380 6675 -798 4 1393 372 342 59 38 chr1 106026637 106026926 -91168506 + Lx8 LINE L1 7158 7452 -21 4 1393 535 292 90 27 chr1 106027041 106027407 -91168025 + L1MA4 LINE L1 5538 5926 -374 4 1393 352 379 73 36 chr1 106027561 106027835 -91167597 + B4A SINE B4 9 292 0 4 1393 210 118 0 0 chr1 106027900 106027934 -91167498 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1393 504 246 37 30 chr1 106028426 106028560 -91166872 + B3 SINE B2 2 136 -80 4 1393 21 36 0 0 chr1 106028588 106028616 -91166816 + AT_rich Low_complexity Low_complexity 1 28 0 4 1393 1124 180 16 20 chr1 106028801 106029045 -91166387 + Lx3B LINE L1 6728 6970 -3 5 1393 229 108 0 0 chr1 106029215 106029252 -91166180 + L1_Mus2 LINE L1 6522 6558 -8 5 1393 234 0 0 0 chr1 106029252 106029278 -91166154 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1393 423 0 0 0 chr1 106029278 106029324 -91166108 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1393 598 306 61 160 chr1 106029861 106030367 -91165065 - RMER13A LTR ERVK -91 536 30 5 1393 290 298 58 120 chr1 106032482 106032673 -91162759 + RLTR25B LTR ERVK 850 1028 0 5 1393 181 295 65 16 chr1 106033897 106033959 -91161473 + L4 LINE RTE 1780 1844 -185 5 1393 216 191 0 0 chr1 106034708 106034755 -91160677 + T-rich Low_complexity Low_complexity 1 47 0 5 1393 669 277 33 100 chr1 106035182 106035475 -91159957 - RLTR18B LTR ERVK 0 616 235 5 1393 601 129 0 8 chr1 106035476 106035593 -91159839 + Lx LINE L1 6538 6653 -1 5 1393 380 303 59 122 chr1 106035653 106035875 -91159557 + ID_B1 SINE B4 4 211 -13 6 1393 1078 102 0 0 chr1 106036151 106036298 -91159134 + B1_Mus1 SINE Alu 2 148 0 6 1393 720 130 0 0 chr1 106036709 106036824 -91158608 + (TTTC)n Simple_repeat Simple_repeat 3 117 0 6 1393 372 350 63 17 chr1 106036824 106037062 -91158370 - Lx8 LINE L1 -360 7113 6865 6 1393 264 321 0 28 chr1 106037064 106037173 -91158259 + CT-rich Low_complexity Low_complexity 5 110 0 6 1394 1429 55 0 0 chr1 106037485 106037667 -91157765 - L1Md_T LINE L1 0 6582 6401 6 1394 551 301 57 29 chr1 106037667 106038123 -91157309 - Lx8 LINE L1 -1659 5985 5472 6 1394 1036 88 0 39 chr1 106038514 106038668 -91156764 - B1_Mus1 SINE Alu 0 148 1 6 1394 219 345 25 50 chr1 106038682 106038801 -91156631 - B3A SINE B2 0 198 83 6 1394 2440 229 37 19 chr1 106039211 106039835 -91155597 + Lx9 LINE L1 7010 7644 0 6 1394 745 287 71 54 chr1 106040156 106040565 -91154867 + L1MA8 LINE L1 5545 5960 -331 6 1394 1139 315 85 52 chr1 106040605 106041312 -91154120 + Lx8 LINE L1 6626 7355 -118 7 1394 201 108 0 0 chr1 106041651 106041688 -91153744 + (TTG)n Simple_repeat Simple_repeat 2 38 0 7 1394 743 64 18 35 chr1 106041699 106041813 -91153619 - B1_Mm SINE Alu 0 147 36 7 1394 11380 131 40 12 chr1 106041813 106042039 -91153393 - L1_Mm LINE L1 -998 4885 4641 7 1394 278 26 0 25 chr1 106042039 106042079 -91153353 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1394 11380 131 40 12 chr1 106042079 106042508 -91152924 - L1_Mm LINE L1 -1243 4640 4209 7 1394 396 0 0 0 chr1 106042508 106042552 -91152880 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1394 231 36 0 0 chr1 106042552 106042579 -91152853 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1394 11380 131 40 12 chr1 106042579 106043875 -91151557 - L1_Mm LINE L1 -1675 4208 2881 7 1394 24139 83 136 6 chr1 106043872 106048053 -91147379 - L1Md_F2 LINE L1 -2 6580 1719 7 1394 273 29 0 0 chr1 106048053 106048087 -91147345 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1394 955 131 0 0 chr1 106048087 106048224 -91147208 - B1_Mus2 SINE Alu -10 137 1 7 1394 24139 124 98 2 chr1 106048224 106049181 -91146251 - L1Md_F2 LINE L1 -4165 1718 757 7 1394 322 91 0 0 chr1 106049181 106049225 -91146207 + B1_Mus1 SINE Alu 33 76 -72 8 1394 21 0 0 0 chr1 106049270 106049291 -91146141 + AT_rich Low_complexity Low_complexity 1 21 0 8 1394 198 0 0 0 chr1 106049841 106049863 -91145569 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1394 7352 213 53 52 chr1 106049992 106052413 -91143019 + Lx4B LINE L1 798 3222 -2655 8 1394 4066 46 2 6 chr1 106052413 106052919 -91142513 + L1Md_F2 LINE L1 6076 6579 -3 8 1394 7352 208 46 56 chr1 106052919 106053225 -91142207 + Lx4B LINE L1 3223 3542 -2335 8 1394 2919 61 45 0 chr1 106053286 106053665 -91141767 + MTA_Mm LTR MaLR 1 396 0 8 1394 8531 60 7 1 chr1 106053665 106054752 -91140680 + MTA_Mm-int LTR MaLR 1 1094 -4 8 1394 3290 43 2 0 chr1 106054756 106055151 -91140281 + MTA_Mm LTR MaLR 1 396 0 8 1394 350 299 0 0 chr1 106055252 106055339 -91140093 + L1_Mur3 LINE L1 5497 5583 -297 8 1394 35460 73 21 13 chr1 106055466 106060806 -91134626 + Lx7 LINE L1 196 5586 -297 8 1394 8346 37 0 0 chr1 106060806 106061802 -91133630 + L1Md_A LINE L1 5587 6582 0 8 1394 35460 164 22 12 chr1 106061802 106062331 -91133101 + Lx7 LINE L1 5587 6117 -1579 8 1394 712 222 130 0 chr1 106062485 106062647 -91132785 + RMER1B Other Other 873 1055 -11 8 1394 1550 256 68 68 chr1 106062675 106063207 -91132225 - RLTR20B3 LTR ERVK -42 535 4 9 1394 8199 203 46 81 chr1 106063210 106063721 -91131711 + Lx4B LINE L1 3546 4064 -1813 8 1394 306 0 0 0 chr1 106063721 106063755 -91131677 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1394 8199 203 46 81 chr1 106063755 106065254 -91130178 + Lx4B LINE L1 4065 5447 -430 8 1394 279 0 0 0 chr1 106065254 106065285 -91130147 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1394 8199 218 65 38 chr1 106065285 106066181 -91129251 + Lx4B LINE L1 5448 6397 -661 8 1394 629 248 76 54 chr1 106066200 106066479 -91128953 + RLTR20D LTR ERVK 6 274 -294 9 1394 326 203 14 0 chr1 106066457 106066526 -91128906 + RLTR20D LTR ERVK 383 452 -89 9 1394 348 24 0 0 chr1 106066529 106066570 -91128862 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1394 765 131 0 0 chr1 106066570 106066723 -91128709 + (GA)n Simple_repeat Simple_repeat 2 154 0 9 1394 517 211 0 0 chr1 106066740 106066830 -91128602 + RLTR16 LTR ERVK 412 501 -4 9 1394 265 272 103 26 chr1 106067079 106067196 -91128236 + L1VL2 LINE L1 68 193 -6142 9 1394 3181 187 38 20 chr1 106067188 106068594 -91126838 + L1Md_F LINE L1 235 1666 -2151 9 1394 248 108 0 0 chr1 106068589 106068626 -91126806 + L1_Mus2 LINE L1 5029 5065 -818 9 1394 632 103 0 0 chr1 106068623 106068710 -91126722 - MusHAL1 LINE L1 -2072 640 554 1 1394 6404 88 7 8 chr1 106068704 106069587 -91125845 + L1_Mus2 LINE L1 5683 6564 -2 9 1394 274 143 81 54 chr1 106069587 106069661 -91125771 + MYSERV16_I-int LTR ERVK 332 407 -1919 1 1394 4796 173 51 19 chr1 106069647 106070817 -91124615 + MYSERV16_I-int LTR ERVK 1111 2318 -8 1 1394 781 247 59 72 chr1 106070846 106071082 -91124350 + RLTR20D LTR ERVK 51 283 -285 1 1394 639 262 12 41 chr1 106071068 106071239 -91124193 + RLTR20D LTR ERVK 403 568 0 1 1394 1629 235 48 16 chr1 106071239 106071654 -91123778 + Lx4B LINE L1 6425 6838 -138 8 1394 615 14 0 0 chr1 106071654 106071726 -91123706 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1394 485 218 139 26 chr1 106071726 106071816 -91123616 + Lx4B LINE L1 6930 7032 -26 8 1394 335 23 23 0 chr1 106071820 106071864 -91123568 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1394 275 333 0 13 chr1 106072212 106072291 -91123141 + ID4 SINE ID 6 83 0 1 1394 2538 149 2 5 chr1 106074855 106075292 -91120140 + L1_Mm LINE L1 4569 5004 -879 1 1394 983 194 255 15 chr1 106075532 106075877 -91119555 + Lx5 LINE L1 896 1322 -4555 1 1394 4298 54 6 2 chr1 106075877 106076414 -91119018 + L1Md_F2 LINE L1 6031 6569 -13 1 1394 983 226 27 18 chr1 106076414 106076628 -91118804 + Lx5 LINE L1 1323 1540 -4337 1 1394 2724 199 97 7 chr1 106076627 106077237 -91118195 + Lx5 LINE L1 2558 3218 -2659 1 1394 432 0 0 0 chr1 106077237 106077285 -91118147 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1394 2724 199 97 7 chr1 106077285 106077397 -91118035 + Lx5 LINE L1 3219 3344 -2533 1 1394 30901 75 33 11 chr1 106077400 106082449 -91112983 + L1Md_F2 LINE L1 434 5586 -297 1 1394 7369 73 8 3 chr1 106082450 106083440 -91111992 + L1Md_F2 LINE L1 5588 6582 0 1 1394 23 33 0 0 chr1 106083487 106083517 -91111915 + AT_rich Low_complexity Low_complexity 1 30 0 1 1394 8903 198 18 78 chr1 106083554 106084407 -91111025 + Lx5 LINE L1 3489 4307 -1570 1 1394 5595 63 6 3 chr1 106084407 106085137 -91110295 + L1_Mus1 LINE L1 5835 6566 -1 1 1394 8903 198 18 78 chr1 106085137 106086628 -91108804 + Lx5 LINE L1 4308 5693 -184 1 1394 214 50 50 0 chr1 106086833 106086873 -91108559 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1394 5431 229 47 22 chr1 106087104 106088422 -91107010 + Lx5 LINE L1 5696 7046 -4 1 1394 438 165 29 0 chr1 106088425 106088528 -91106904 + GA-rich Low_complexity Low_complexity 2 107 0 1 1394 1049 136 6 0 chr1 106088538 106088715 -91106717 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1394 341 58 19 0 chr1 106089373 106089425 -91106007 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1 1394 32979 76 2 3 chr1 106089444 106090733 -91104699 - L1Md_F2 LINE L1 0 6582 5304 1 1394 1148 63 19 0 chr1 106090733 106090892 -91104540 - L1Md_T LINE L1 -1 6581 6420 1 1394 32979 95 3 9 chr1 106090892 106095583 -91099849 - L1Md_F2 LINE L1 -580 5303 633 1 1394 207 0 0 0 chr1 106095584 106095607 -91099825 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1394 21 36 0 0 chr1 106095915 106095943 -91099489 + AT_rich Low_complexity Low_complexity 1 28 0 1 1394 872 303 59 26 chr1 106096539 106096810 -91098622 + MTD LTR MaLR 140 419 0 1 1394 24 0 0 0 chr1 106096824 106096848 -91098584 + AT_rich Low_complexity Low_complexity 1 24 0 1 1394 36 40 0 0 chr1 106097100 106097150 -91098282 + AT_rich Low_complexity Low_complexity 1 50 0 1 1394 296 287 39 10 chr1 106097316 106097418 -91098014 + MLT1E1A LTR MaLR 139 243 -437 1 1394 1029 122 0 0 chr1 106097771 106097919 -91097513 - B1_Mus1 SINE Alu 0 148 1 1 1394 263 178 0 0 chr1 106098230 106098275 -91097157 + L1MA5 LINE L1 6195 6239 -61 1 1394 684 227 0 60 chr1 106098435 106098585 -91096847 - B1_Mur2 SINE Alu -8 141 1 1 1394 297 233 7 205 chr1 106098451 106098602 -91096830 - MT2B LTR ERVL -330 271 151 1 1394 2515 151 16 30 chr1 106098929 106099669 -91095763 + L1VL4 LINE L1 444 1168 -2391 1 1394 2777 103 143 7 chr1 106099671 106100131 -91095301 - L1_Mus2 LINE L1 -1487 4396 3874 1 1394 10362 92 17 9 chr1 106100119 106101505 -91093927 + L1_Mus2 LINE L1 4389 5791 -92 1 1394 1528 38 16 5 chr1 106101505 106101692 -91093740 + B2_Mm1a SINE B2 1 189 -4 1 1394 10362 85 73 33 chr1 106101692 106101834 -91093598 + L1_Mus2 LINE L1 5792 5929 -637 1 1394 2362 210 30 6 chr1 106101842 106102383 -91093049 + L1_Mur2 LINE L1 4744 5297 -580 1 1394 872 74 66 0 chr1 106102383 106102504 -91092928 + B1_Mus1 SINE Alu 1 129 -19 1 1394 6174 16 0 0 chr1 106102504 106103211 -91092221 + L1Md_T LINE L1 4880 5586 -297 1 1394 8025 53 0 0 chr1 106103211 106104207 -91091225 + L1Md_T LINE L1 5587 6582 0 1 1394 748 191 3 43 chr1 106104215 106104416 -91091016 + Lx LINE L1 5246 5441 -445 1 1394 2036 82 7 7 chr1 106104413 106104696 -91090736 - L1Md_F2 LINE L1 -434 6148 5866 1 1394 1411 74 0 14 chr1 106104697 106104904 -91090528 + L1Md_F2 LINE L1 6378 6581 -1 1 1394 1882 184 23 134 chr1 106104904 106105107 -91090325 + Lx LINE L1 5454 5605 -278 1 1394 4801 98 55 28 chr1 106105107 106105850 -91089582 + L1_Mus2 LINE L1 5804 6566 0 1 1394 5790 156 39 3 chr1 106105850 106106868 -91088564 + Lx LINE L1 5605 6648 -6 1 1394 360 326 73 1 chr1 106106951 106107216 -91088216 + L1MC LINE L1 3496 3782 -2364 1 1394 213 325 139 35 chr1 106107364 106107450 -91087982 + B1F SINE Alu 30 124 -25 1 1394 23 54 0 0 chr1 106107536 106107573 -91087859 + AT_rich Low_complexity Low_complexity 1 37 0 1 1394 2352 183 52 11 chr1 106107693 106108499 -91086933 - L1Md_F LINE L1 -2433 1481 183 1 1394 22 70 0 0 chr1 106109542 106109585 -91085847 + AT_rich Low_complexity Low_complexity 1 43 0 1 1394 370 360 143 18 chr1 106111270 106111711 -91083721 - Lx8 LINE L1 -633 6840 6345 1 1394 561 281 80 96 chr1 106112102 106112591 -91082841 - L1MA10 LINE L1 0 6334 5854 1 1394 35389 34 0 0 chr1 106114241 106119668 -91075764 + L1Md_T LINE L1 66 5589 -297 1 1394 8983 5 0 0 chr1 106119668 106120664 -91074768 + L1Md_T LINE L1 5590 6585 0 1 1394 360 0 0 0 chr1 106120864 106120904 -91074528 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1394 275 218 59 0 chr1 106120905 106121006 -91074426 + A-rich Low_complexity Low_complexity 4 110 0 1 1394 253 277 45 57 chr1 106121008 106121096 -91074336 + PB1D9 SINE Alu 3 89 -31 1 1394 28 0 0 0 chr1 106125779 106125807 -91069625 + AT_rich Low_complexity Low_complexity 1 28 0 1 1394 343 374 67 0 chr1 106126632 106126902 -91068530 + MamRep605 Unknown Unknown 429 716 -160 1 1394 402 57 0 0 chr1 106127165 106127218 -91068214 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1394 3851 218 69 12 chr1 106127688 106128547 -91066885 - RMER13B LTR ERVK 0 908 1 1 1394 759 297 201 18 chr1 106128841 106129180 -91066252 - MTD LTR MaLR -14 405 5 1 1394 257 0 0 29 chr1 106130242 106130276 -91065156 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1394 29 47 0 0 chr1 106130789 106130832 -91064600 + AT_rich Low_complexity Low_complexity 1 43 0 1 1394 233 269 0 0 chr1 106131117 106131169 -91064263 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1394 284 291 23 107 chr1 106131219 106131350 -91064082 - RSINE1 SINE B4 -36 129 10 1 1394 347 304 156 66 chr1 106131382 106131702 -91063730 + L1ME1 LINE L1 3660 4008 -2138 1 1394 244 265 125 2 chr1 106131826 106132009 -91063423 + L1ME1 LINE L1 5267 5469 -687 1 1394 294 299 50 25 chr1 106132084 106132283 -91063149 + L1ME1 LINE L1 5725 5928 -251 1 1394 3605 255 75 11 chr1 106132309 106133208 -91062224 + Lx5 LINE L1 6092 7047 -3 1 1394 1036 196 121 82 chr1 106133357 106133662 -91061770 - ORR1C1 LTR MaLR 0 378 62 1 1394 296 338 43 35 chr1 106133838 106133979 -91061453 - B3 SINE B2 -27 189 48 1 1394 8437 59 4 3 chr1 106133988 106135784 -91059648 - L1Md_F2 LINE L1 -14 6568 4776 1 1394 231 238 0 0 chr1 106136073 106136115 -91059317 - ORR1C2 LTR MaLR -214 170 129 1 1394 295 190 0 0 chr1 106136117 106136175 -91059257 - B1_Mur3 SINE Alu -6 143 86 1 1394 504 237 92 0 chr1 106136198 106136329 -91059103 - B1_Mur4 SINE Alu -7 143 1 1 1394 549 258 17 0 chr1 106137021 106137141 -91058291 - B3A SINE B2 -76 122 1 1 1394 849 307 37 120 chr1 106137172 106137798 -91057634 - L1_Mur3 LINE L1 -846 5034 4461 1 1394 2724 284 105 30 chr1 106137949 106139009 -91056423 + Lx8 LINE L1 5017 6177 -1296 1 1394 351 0 0 0 chr1 106139009 106139048 -91056384 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1394 2724 333 74 55 chr1 106139048 106140317 -91055115 + Lx8 LINE L1 6178 7443 -30 1 1394 625 191 37 0 chr1 106140425 106140561 -91054871 + Lx3A LINE L1 6834 6974 -7 1 1394 22 0 0 0 chr1 106140562 106140584 -91054848 + AT_rich Low_complexity Low_complexity 1 22 0 1 1394 239 0 0 31 chr1 106140879 106140911 -91054521 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1394 1062 263 85 7 chr1 106141009 106141292 -91054140 - MTC LTR MaLR -1 420 116 1 1394 674 181 26 32 chr1 106141297 106141451 -91053981 + Lx4A LINE L1 6906 7058 0 1 1394 24 0 0 0 chr1 106141461 106141485 -91053947 + AT_rich Low_complexity Low_complexity 1 24 0 1 1394 9692 97 7 3 chr1 106141505 106142957 -91052475 + L1_Mur1 LINE L1 3172 4628 -1258 1 1394 5457 141 45 16 chr1 106142956 106143916 -91051516 + Lx3_Mus LINE L1 5999 6986 -23 1 1394 324 0 0 0 chr1 106143916 106143952 -91051480 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1394 425 73 59 0 chr1 106144039 106144107 -91051325 - MTC LTR MaLR -339 82 11 1 1394 1173 105 23 34 chr1 106144481 106144658 -91050774 + Lx2 LINE L1 6472 6646 -351 1 1394 1202 126 6 0 chr1 106144657 106144839 -91050593 + Lx2 LINE L1 6789 6971 -26 1 1394 1107 244 29 21 chr1 106145083 106145386 -91050046 + MTD LTR MaLR 1 315 -106 1 1394 3951 163 113 161 chr1 106146221 106147391 -91048041 + RLTR13D3 LTR ERVK 1 1114 0 1 1394 277 255 172 28 chr1 106147578 106147723 -91047709 - MLT1E1A LTR MaLR -421 259 94 1 1394 355 359 64 27 chr1 106147873 106148171 -91047261 - L1MC4 LINE L1 -204 7838 7530 1 1394 395 358 70 33 chr1 106148356 106148783 -91046649 - L1MC4 LINE L1 -502 7540 7098 1 1394 376 386 6 52 chr1 106148862 106149034 -91046398 + RSINE1 SINE B4 2 165 0 1 1394 790 314 13 14 chr1 106149616 106149929 -91045503 - Lx2B LINE L1 -47 6929 6606 1 1394 36 0 0 0 chr1 106149965 106150001 -91045431 + AT_rich Low_complexity Low_complexity 1 36 0 1 1394 2380 179 13 2 chr1 106150001 106150461 -91044971 + L1_Mur2 LINE L1 3345 3809 -2068 1 1394 298 227 0 131 chr1 106150454 106150591 -91044841 - L1_Mur1 LINE L1 -515 5371 5253 1 1394 1016 227 209 6 chr1 106150566 106150921 -91044511 - L1_Mur3 LINE L1 -4010 1870 1444 1 1394 240 200 0 62 chr1 106150922 106150970 -91044462 + RLTR9A LTR ERVK 2 46 -322 1 1394 11522 147 2 3 chr1 106151101 106152162 -91043270 - Lx LINE L1 -6 6648 5589 1 1394 6746 103 41 17 chr1 106152162 106153161 -91042271 - RLTR13D5 LTR ERVK 0 1023 1 1 1394 11522 196 34 7 chr1 106153161 106155354 -91040078 - Lx LINE L1 -289 5594 3328 1 1394 464 327 36 0 chr1 106155489 106155654 -91039778 - Lx8 LINE L1 -131 7342 7172 1 1394 186 43 0 0 chr1 106155944 106155967 -91039465 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 1394 185 196 18 0 chr1 106159065 106159121 -91036311 + (TTG)n Simple_repeat Simple_repeat 2 58 0 1 1394 204 227 45 0 chr1 106159511 106159577 -91035855 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1394 579 346 47 97 chr1 106161058 106161397 -91034035 + MTE2b LTR MaLR 5 326 -53 1 1394 564 65 0 0 chr1 106161526 106161603 -91033829 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1394 366 127 0 0 chr1 106161603 106161674 -91033758 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 1394 4057 119 72 3 chr1 106162094 106163400 -91032032 - L1_Mus3 LINE L1 0 6638 5243 2 174 31985 39 0 3 chr1 106163403 106169638 -91025794 - L1Md_T LINE L1 0 6585 271 2 1395 1678 159 3 0 chr1 106169635 106169930 -91025502 - L1_Mus3 LINE L1 -624 5259 4964 2 1395 369 267 0 47 chr1 106169932 106170038 -91025394 - ETnERV2-int LTR ERVK -4852 2554 2454 2 1395 578 200 25 8 chr1 106170051 106170172 -91025260 - RLTR19-int LTR ERVK -5077 1060 938 2 1395 327 223 276 37 chr1 106170177 106170344 -91025088 - RLTR19-int LTR ERVK -4587 819 613 2 1395 38015 29 0 0 chr1 106170353 106176714 -91018718 - L1Md_T LINE L1 0 6585 128 2 1395 617 236 18 45 chr1 106176714 106176885 -91018547 - RLTR10E LTR ERVK -188 157 1 2 1395 2068 188 41 50 chr1 106176885 106177344 -91018088 - L1VL1 LINE L1 -5777 645 191 2 1395 279 363 13 6 chr1 106177646 106177804 -91017628 + (CA)n Simple_repeat Simple_repeat 2 160 0 2 1395 3186 44 0 0 chr1 106177997 106178384 -91017048 + L1Md_F3 LINE L1 6184 6570 -14 2 1395 24 0 0 0 chr1 106178723 106178747 -91016685 + AT_rich Low_complexity Low_complexity 1 24 0 2 1395 1517 268 94 33 chr1 106179340 106179830 -91015602 - RMER15 LTR ERVL -27 548 29 2 1395 534 261 38 19 chr1 106179845 106180005 -91015427 - URR1B DNA MER1_type 0 225 63 2 1395 406 301 113 5 chr1 106180409 106180603 -91014829 - B3 SINE B2 -1 215 1 2 1395 1492 284 36 8 chr1 106180706 106181093 -91014339 - MTD LTR MaLR -8 411 14 2 1395 1391 292 60 57 chr1 106181105 106181770 -91013662 + RLTR40 LTR ERVK 117 783 -34 2 1395 29 0 0 0 chr1 106182558 106182587 -91012845 + AT_rich Low_complexity Low_complexity 1 29 0 2 1395 451 306 29 29 chr1 106182629 106182767 -91012665 - RSINE1 SINE B4 -16 149 12 2 1395 244 279 147 2 chr1 106183979 106184087 -91011345 + MIRc SINE MIR 60 180 -88 2 1395 438 254 17 9 chr1 106184284 106184399 -91011033 - MIR SINE MIR 0 262 147 2 1395 208 333 58 50 chr1 106185460 106185599 -91009833 - L2b LINE L2 -5 3421 3282 2 1395 1626 123 0 0 chr1 106185720 106185955 -91009477 + Lx2 LINE L1 6411 6645 -352 2 1395 1036 191 9 29 chr1 106185944 106186154 -91009278 + Lx2 LINE L1 6765 6970 -27 2 1395 2820 26 54 3 chr1 106186154 106186503 -91008929 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1395 28685 23 1 1 chr1 106186503 106189775 -91005657 - IAPEz-int LTR ERVK 0 6481 3210 2 1395 7301 81 98 69 chr1 106189774 106191043 -91004389 - IAPEz-int LTR ERVK -5168 1313 8 2 1395 2820 26 54 3 chr1 106191043 106191392 -91004040 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1395 241 302 18 13 chr1 106191625 106191711 -91003721 - L2b LINE L2 -52 3374 3237 2 1395 1171 82 6 12 chr1 106191772 106191814 -91003618 - Lx3A LINE L1 -1028 5953 5912 2 1395 198 0 0 0 chr1 106191814 106191836 -91003596 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1395 1171 82 6 12 chr1 106191836 106191965 -91003467 - Lx3A LINE L1 -1070 5911 5783 2 1395 11710 121 4 1 chr1 106191984 106194448 -91000984 - L1_Mus2 LINE L1 0 6566 4093 2 1395 3180 148 24 0 chr1 106194446 106194981 -91000451 - Lx3A LINE L1 -89 5797 5250 2 1395 3648 118 23 10 chr1 106194969 106195569 -90999863 + Lx3A LINE L1 5972 6579 -402 2 1395 769 244 98 69 chr1 106195571 106195820 -90999612 + MTE2b-int LTR MaLR 770 1021 -237 2 1395 504 0 0 0 chr1 106195820 106195876 -90999556 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 2 1395 769 244 98 69 chr1 106195876 106195943 -90999489 + MTE2b-int LTR MaLR 1022 1095 -163 2 1395 263 212 45 15 chr1 106195965 106196032 -90999400 + MTE2b LTR MaLR 1 69 -352 2 1395 677 345 48 0 chr1 106196041 106196290 -90999142 - Lx9 LINE L1 -849 6795 6535 2 1395 848 312 32 61 chr1 106196555 106196882 -90998550 + MTE2b LTR MaLR 57 359 0 2 1395 483 33 0 0 chr1 106198985 106199046 -90996386 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1395 515 326 8 0 chr1 106199059 106199188 -90996244 - RSINE1 SINE B4 -32 133 4 2 1395 2816 248 75 9 chr1 106199647 106200332 -90995100 + Lx6 LINE L1 6704 7433 -27 2 1395 251 128 0 40 chr1 106200322 106200392 -90995040 + Lx7 LINE L1 7641 7696 0 2 1395 4328 86 40 14 chr1 106200648 106201274 -90994158 - L1Md_F2 LINE L1 -2 6580 5939 2 1395 248 411 45 32 chr1 106201277 106201433 -90993999 - ID_B1 SINE B4 -66 158 1 2 1395 216 0 0 0 chr1 106202329 106202353 -90993079 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1395 196 50 48 48 chr1 106202524 106202566 -90992866 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 2 1395 610 306 11 22 chr1 106202712 106202896 -90992536 - Lx8 LINE L1 -212 7261 7080 2 1395 1069 326 137 24 chr1 106202903 106203610 -90991822 - Lx8 LINE L1 -561 6912 6172 2 1395 1068 122 0 0 chr1 106203610 106203757 -90991675 - B1_Mm SINE Alu 0 147 1 2 1395 737 306 122 70 chr1 106203757 106204458 -90990974 - Lx8 LINE L1 -1525 6171 5435 2 1395 2638 152 30 7 chr1 106204458 106204922 -90990510 + Lx2 LINE L1 6523 6997 0 2 1395 737 286 122 64 chr1 106204922 106204981 -90990451 - Lx8 LINE L1 -446 5434 5381 2 1395 1018 207 313 0 chr1 106204981 106205281 -90990151 + ORR1B1 LTR MaLR 1 394 0 2 1395 737 286 122 64 chr1 106205281 106205439 -90989993 - Lx8 LINE L1 -500 5380 5218 2 1395 39 38 0 0 chr1 106205810 106205863 -90989569 + AT_rich Low_complexity Low_complexity 1 53 0 2 1395 1461 57 0 10 chr1 106205867 106206061 -90989371 - L1Md_F3 LINE L1 -14 6570 6379 2 1395 205 214 18 0 chr1 106206245 106206301 -90989131 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1395 659 165 0 8 chr1 106206315 106206449 -90988983 + (TA)n Simple_repeat Simple_repeat 2 134 0 2 1395 1677 152 45 75 chr1 106206874 106207209 -90988223 - ORR1A4 LTR MaLR 0 329 5 2 1395 276 273 77 53 chr1 106207593 106207763 -90987669 - Lx8 LINE L1 -20 7453 7280 2 1395 410 49 16 0 chr1 106207763 106207824 -90987608 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1395 317 24 24 0 chr1 106207897 106207939 -90987493 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1395 316 344 137 4 chr1 106207940 106208188 -90987244 - Lx8 LINE L1 -288 7185 6905 2 1395 243 0 0 0 chr1 106208217 106208244 -90987188 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1395 2530 226 38 9 chr1 106208626 106209283 -90986149 - L1_Mur2 LINE L1 -581 5296 4621 2 1395 505 281 298 26 chr1 106210015 106210522 -90984910 - L1MB5 LINE L1 -103 6081 5413 2 1395 2399 130 11 0 chr1 106210522 106210900 -90984532 + Lx LINE L1 6268 6649 -5 2 1395 505 281 54 20 chr1 106210900 106211019 -90984413 - L1MB5 LINE L1 -762 5412 5291 2 1395 3221 246 86 4 chr1 106211432 106212164 -90983268 - RMER1B Other Other -238 828 37 2 1395 234 0 0 0 chr1 106213021 106213047 -90982385 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1395 207 0 0 0 chr1 106213932 106213955 -90981477 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1395 23 0 0 0 chr1 106214460 106214483 -90980949 + AT_rich Low_complexity Low_complexity 1 23 0 2 1395 354 325 85 62 chr1 106215489 106215748 -90979684 - L1MC3 LINE L1 -2 7783 7519 2 1395 441 0 0 0 chr1 106215868 106215917 -90979515 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1395 32 26 0 0 chr1 106215965 106216004 -90979428 + AT_rich Low_complexity Low_complexity 1 39 0 2 1395 281 145 0 16 chr1 106216025 106216088 -90979344 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1395 189 361 35 7 chr1 106216562 106216707 -90978725 - L2a LINE L2 -345 3081 2933 2 1395 405 0 0 0 chr1 106218213 106218258 -90977174 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1395 219 36 0 0 chr1 106218260 106218288 -90977144 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1395 239 362 29 7 chr1 106218764 106218903 -90976529 + Lx7 LINE L1 6851 6992 -704 2 1395 249 327 39 19 chr1 106218954 106219057 -90976375 + Lx8 LINE L1 7094 7198 -275 2 1395 304 187 91 26 chr1 106219163 106219240 -90976192 - ORR1B2 LTR MaLR 0 367 286 2 1395 1252 209 49 35 chr1 106219578 106219865 -90975567 - ORR1B2 LTR MaLR -76 291 1 2 1395 299 293 13 0 chr1 106220364 106220439 -90974993 - RSINE1 SINE B4 -4 161 86 2 1395 1318 280 105 73 chr1 106221025 106221576 -90973856 - RMER13B LTR ERVK 0 908 340 2 1395 1188 224 54 81 chr1 106221584 106222033 -90973399 - RMER17B LTR ERVK -519 439 1 2 1395 307 352 24 8 chr1 106222035 106222158 -90973274 + MLT1A0 LTR MaLR 74 198 -167 2 1395 6218 132 109 23 chr1 106222215 106223364 -90972068 - Lx3B LINE L1 -3 6970 5723 2 1395 402 39 0 0 chr1 106223442 106223494 -90971938 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1395 270 399 15 15 chr1 106224534 106224669 -90970763 + ORR1E LTR MaLR 7 141 -218 2 1395 346 210 30 0 chr1 106224770 106224870 -90970562 - Lx5 LINE L1 0 7050 6948 2 1395 3114 192 109 54 chr1 106224872 106225708 -90969724 + L1_Mur2 LINE L1 4177 5058 -819 2 1395 416 313 150 6 chr1 106226370 106226537 -90968895 - B3 SINE B2 -19 197 7 2 1395 1362 264 50 152 chr1 106227668 106227887 -90967545 + Lx6 LINE L1 6514 6730 -730 2 1395 812 83 16 0 chr1 106227887 106228008 -90967424 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2 1395 1362 264 50 152 chr1 106228008 106228405 -90967027 + Lx6 LINE L1 6731 7067 -393 2 1395 219 69 0 0 chr1 106228447 106228476 -90966956 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 2 1395 225 361 41 0 chr1 106228532 106228629 -90966803 + Lx7 LINE L1 7207 7307 -389 2 1395 402 21 0 0 chr1 106228630 106228677 -90966755 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1395 25 75 0 0 chr1 106229014 106229067 -90966365 + AT_rich Low_complexity Low_complexity 1 53 0 2 1395 26 30 0 0 chr1 106229148 106229181 -90966251 + AT_rich Low_complexity Low_complexity 1 33 0 2 1395 5862 119 63 30 chr1 106229379 106230370 -90965062 + RLTR13D2 LTR ERVK 1 1023 0 2 1395 198 0 0 0 chr1 106231024 106231046 -90964386 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1395 333 0 0 0 chr1 106231528 106231565 -90963867 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1395 293 289 10 0 chr1 106232140 106232237 -90963195 + L1M4c LINE L1 1614 1711 -5623 2 1395 319 304 94 16 chr1 106232326 106232453 -90962979 + L1M4c LINE L1 1851 1987 -5021 2 1395 435 285 103 14 chr1 106232500 106232792 -90962640 + L1MA9 LINE L1 5995 6312 0 2 1395 3236 260 57 51 chr1 106233090 106234153 -90961279 - Lx9 LINE L1 -236 7408 6339 2 1395 549 0 0 0 chr1 106234161 106234222 -90961210 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1395 447 19 0 0 chr1 106234254 106234306 -90961126 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 2 1395 1171 209 23 34 chr1 106234337 106234599 -90960833 + Lx4B LINE L1 6780 7038 -20 2 1395 309 26 0 0 chr1 106234603 106234641 -90960791 + (CTTA)n Simple_repeat Simple_repeat 1 38 0 2 1395 684 313 64 23 chr1 106234858 106235077 -90960355 - B4A SINE B4 -59 233 6 2 1395 220 170 19 19 chr1 106235100 106235154 -90960278 + T-rich Low_complexity Low_complexity 2 55 0 2 1395 499 221 42 14 chr1 106237047 106237189 -90958243 - Lx6 LINE L1 -4 7456 7311 2 1395 3400 61 0 0 chr1 106237201 106237629 -90957803 - L1Md_F2 LINE L1 -275 6307 5880 2 1395 1137 155 9 66 chr1 106237629 106237857 -90957575 + L1_Mus1 LINE L1 6353 6567 0 3 1395 560 193 20 51 chr1 106237860 106238068 -90957364 - Lx6 LINE L1 -125 7571 7389 2 1395 447 68 0 0 chr1 106238068 106238127 -90957305 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1395 216 0 0 0 chr1 106238128 106238152 -90957280 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1395 407 288 64 87 chr1 106238152 106238207 -90957225 - Lx6 LINE L1 -341 7119 7063 2 1395 34686 35 6 0 chr1 106238236 106243183 -90952249 - L1Md_T LINE L1 -1 6581 1607 3 1395 854 285 60 33 chr1 106243150 106243484 -90951948 - Lx6 LINE L1 -380 7080 6738 2 1395 333 100 0 0 chr1 106245535 106245585 -90949847 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 3 1395 27 62 0 0 chr1 106245902 106245950 -90949482 + AT_rich Low_complexity Low_complexity 1 48 0 3 1395 304 389 45 40 chr1 106246077 106246278 -90949154 - B4A SINE B4 -90 202 1 3 1395 656 257 68 24 chr1 106247363 106247570 -90947862 + B3 SINE B2 1 216 0 3 1395 519 45 0 0 chr1 106248103 106248169 -90947263 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1395 972 284 34 67 chr1 106248192 106248550 -90946882 + ORR1E LTR MaLR 6 351 -8 3 1395 1156 219 116 52 chr1 106249327 106249751 -90945681 - Lx9 LINE L1 0 7644 7194 3 1395 6746 96 7 2 chr1 106250119 106251066 -90944366 + L1_Mus3 LINE L1 5701 6632 -6 3 1395 21 0 0 0 chr1 106251082 106251103 -90944329 + AT_rich Low_complexity Low_complexity 1 21 0 3 1395 240 258 30 40 chr1 106251224 106251325 -90944107 - RLTR25B LTR ERVK 0 1028 929 3 1395 230 0 33 0 chr1 106251358 106251388 -90944044 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1395 2522 122 40 0 chr1 106251395 106251790 -90943642 - L1_Mus4 LINE L1 -16 6620 6210 3 1395 3859 123 7 7 chr1 106251862 106252466 -90942966 + Lx LINE L1 6051 6654 0 3 1395 261 317 44 88 chr1 106252473 106252632 -90942800 - RLTR25B LTR ERVK -856 172 21 3 1395 23 0 0 0 chr1 106252802 106252825 -90942607 + AT_rich Low_complexity Low_complexity 1 23 0 3 1395 737 207 240 71 chr1 106253041 106253366 -90942066 - Lx4B LINE L1 -6 7052 6673 3 1395 8365 154 30 8 chr1 106253369 106253730 -90941702 + Lx4B LINE L1 4337 4727 -1150 3 1395 339 25 0 0 chr1 106253730 106253770 -90941662 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1395 8365 171 22 12 chr1 106253770 106255720 -90939712 + Lx4B LINE L1 4728 6680 -378 3 1395 1938 152 48 43 chr1 106256193 106256565 -90938867 - Lx2 LINE L1 -99 6898 6525 3 1395 876 199 84 102 chr1 106256985 106257259 -90938173 + MTC LTR MaLR 1 269 -152 3 1395 335 347 55 27 chr1 106257268 106257487 -90937945 + L1M2 LINE L1 3299 3523 -2623 3 1395 3147 39 8 0 chr1 106257487 106257874 -90937558 + L1Md_F3 LINE L1 6181 6570 -14 3 1395 522 230 47 101 chr1 106257937 106258201 -90937231 - RLTR25A LTR ERVK -5 1023 646 3 1395 239 282 99 0 chr1 106258197 106258268 -90937164 - ORR1A3-int LTR MaLR -999 964 887 3 1395 243 0 0 0 chr1 106258268 106258295 -90937137 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1395 14306 136 52 45 chr1 106258722 106260937 -90934495 - L1Md_F2 LINE L1 -14 6568 4348 3 1395 2915 18 2 124 chr1 106260937 106261379 -90934053 + RLTR10 LTR ERVK 1 388 -2 3 1395 14306 186 92 80 chr1 106261379 106262848 -90932584 - L1Md_F2 LINE L1 -1536 4347 2681 3 1395 1383 12 0 6 chr1 106262848 106263016 -90932416 - RLTR10 LTR ERVK -223 167 1 3 1395 14306 186 92 80 chr1 106263016 106263164 -90932268 - L1Md_F2 LINE L1 -1536 2680 2511 3 1395 189 0 0 0 chr1 106263164 106263185 -90932247 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1395 14306 171 63 52 chr1 106263185 106265485 -90929947 - L1Md_F2 LINE L1 -3373 2510 200 3 1395 533 249 37 21 chr1 106265486 106265599 -90929833 - ORR1A3-int LTR MaLR -1069 894 673 3 1395 566 239 43 0 chr1 106265599 106265716 -90929716 - B1_Mus2 SINE Alu -23 124 3 3 1395 533 249 37 21 chr1 106265716 106265736 -90929696 - ORR1A3-int LTR MaLR -1069 672 630 3 1395 1015 203 81 10 chr1 106265778 106265987 -90929445 - MT2B LTR ERVL -343 258 35 3 1395 687 211 169 121 chr1 106265844 106266092 -90929340 - ORR1A3-int LTR MaLR -1205 758 499 3 1395 2141 240 11 63 chr1 106266015 106266567 -90928865 - RLTR25A LTR ERVK -580 523 1 3 1395 288 315 72 42 chr1 106266567 106266829 -90928603 + L1M2 LINE L1 3517 3786 -2357 3 1395 472 267 73 7 chr1 106267027 106267163 -90928269 - B1_Mur1 SINE Alu -1 148 4 3 1395 1287 247 54 26 chr1 106267169 106267635 -90927797 - L1_Rod LINE L1 -753 5094 4616 3 1395 787 247 67 55 chr1 106267733 106268063 -90927369 - Lx7 LINE L1 0 7696 7363 3 1395 501 17 0 0 chr1 106268063 106268121 -90927311 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1395 3573 270 49 10 chr1 106268155 106269120 -90926312 - Lx7 LINE L1 -464 7232 6227 3 1395 597 14 0 0 chr1 106269120 106269190 -90926242 + (TTA)n Simple_repeat Simple_repeat 3 72 0 3 1395 3573 169 0 44 chr1 106269190 106269258 -90926174 - Lx7 LINE L1 -1470 6226 6217 3 1395 6112 120 23 3 chr1 106269265 106270809 -90924623 - L1_Mus3 LINE L1 -152 6486 4901 3 1395 6492 103 0 1 chr1 106270840 106271756 -90923676 - L1VL1 LINE L1 -5294 1128 214 3 1395 971 278 35 46 chr1 106271761 106272127 -90923305 - Lx7 LINE L1 -1465 6231 5870 3 1395 433 366 0 0 chr1 106272342 106272476 -90922956 + B1F SINE Alu 2 135 -14 3 1395 349 270 0 0 chr1 106272495 106272569 -90922863 + B3A SINE B2 7 80 -118 3 1395 6156 80 0 6 chr1 106272575 106273409 -90922023 + L1Md_F2 LINE L1 4757 5585 -298 3 1395 7203 72 26 4 chr1 106273410 106274368 -90921064 + L1Md_F2 LINE L1 5587 6565 -17 3 1395 369 0 0 0 chr1 106274368 106274409 -90921023 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1395 288 77 0 0 chr1 106275285 106275324 -90920108 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1395 1901 138 32 59 chr1 106275631 106275969 -90919463 - ORR1A4 LTR MaLR 0 329 1 3 1395 269 312 35 27 chr1 106276103 106276291 -90919141 + L1M4c LINE L1 2030 2127 -4723 3 1395 561 340 60 46 chr1 106276538 106276621 -90918811 + L1M4c LINE L1 2938 3020 -3825 3 1395 703 202 193 21 chr1 106276621 106276813 -90918619 - URR1A DNA MER1_type 0 226 2 3 1395 561 340 60 46 chr1 106276813 106277359 -90918073 + L1M4c LINE L1 3021 3580 -3265 3 1395 1685 222 19 0 chr1 106277359 106277719 -90917713 + ORR1B2 LTR MaLR 1 367 0 3 1395 626 330 67 31 chr1 106277719 106278036 -90917396 + L1M4c LINE L1 3581 3917 -2928 3 1395 441 36 0 0 chr1 106278320 106278375 -90917057 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1395 867 324 98 21 chr1 106278556 106279164 -90916268 + L1M4c LINE L1 4802 5489 -1356 3 1395 498 46 0 0 chr1 106279164 106279229 -90916203 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1395 867 321 99 22 chr1 106279229 106279474 -90915958 + L1M4c LINE L1 5490 5744 -1101 3 1395 38418 34 4 7 chr1 106279530 106285695 -90909737 - L1Md_A LINE L1 -2 6580 440 3 1395 21 36 0 0 chr1 106285696 106285724 -90909708 + AT_rich Low_complexity Low_complexity 1 28 0 3 1395 2960 282 55 23 chr1 106286151 106287121 -90908311 + RMER1C Other Other 413 1342 0 3 1395 230 217 72 0 chr1 106287395 106287464 -90907968 + L1M4 LINE L1 5366 5439 -735 3 1395 238 287 90 76 chr1 106287601 106287812 -90907620 + L1M4c LINE L1 6303 6516 -477 3 1395 19923 160 34 14 chr1 106287937 106289849 -90905583 - Lx LINE L1 -1 6653 4730 3 1395 183 42 0 0 chr1 106289849 106289873 -90905559 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1395 19923 182 38 15 chr1 106289873 106292923 -90902509 - Lx LINE L1 -1154 4729 1588 3 1395 3080 79 5 0 chr1 106292923 106293342 -90902090 - BGLII LTR ERVK 0 421 1 3 1395 2877 223 57 39 chr1 106293343 106294244 -90901188 - RMER3D-int LTR ERVK -1 2841 1925 3 1395 2036 200 135 83 chr1 106294245 106294941 -90900491 - RMER3D-int LTR ERVK -1148 1694 976 3 1395 1119 23 11 48 chr1 106294941 106295127 -90900305 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 3 1395 642 219 120 43 chr1 106295127 106295407 -90900025 - RMER3D-int LTR ERVK -2256 586 354 3 1395 309 225 30 21 chr1 106295448 106295561 -90899871 - RMER3D-int LTR ERVK -2367 475 375 3 1395 726 227 46 72 chr1 106295562 106295799 -90899633 - LTRIS3 LTR ERV1 0 512 282 3 1395 6290 68 0 4 chr1 106295799 106296886 -90898546 + L1Md_F LINE L1 475 1561 -4322 3 1395 522 184 19 19 chr1 106296886 106296991 -90898441 - LTRIS5 LTR ERV1 -139 308 204 3 1395 685 66 84 9 chr1 106297006 106297113 -90898319 - LTRIS5 LTR ERV1 -332 115 1 3 1395 294 95 0 0 chr1 106297113 106297155 -90898277 - RLTR6-int LTR ERV1 0 7778 7737 3 1395 380 288 110 16 chr1 106297392 106297519 -90897913 - MURVY-int LTR ERV1 -2255 5197 5082 3 1395 620 149 172 6 chr1 106297530 106297658 -90897774 - RLTR1B-int LTR ERV1 -566 2733 2598 3 1395 272 32 0 0 chr1 106297694 106297725 -90897707 - MuRRS4-int LTR ERV1 -2094 2969 2939 3 1395 1840 86 72 0 chr1 106297725 106298003 -90897429 - MT-int LTR MaLR -267 831 534 3 1395 983 63 6 4 chr1 106297984 106298130 -90897302 - MT-int LTR MaLR -666 432 308 3 1395 820 96 168 0 chr1 106298130 106298255 -90897177 - MuRRS4-int LTR ERV1 -2187 2876 2731 3 1395 1910 123 149 81 chr1 106298236 106298801 -90896631 - MuRRS4-int LTR ERV1 -2576 2487 1793 3 1395 649 291 80 12 chr1 106298849 106299099 -90896333 - MuRRS4-int LTR ERV1 -3619 1444 1178 3 1395 239 224 50 33 chr1 106299135 106299195 -90896237 - MTC-int LTR MaLR -283 975 915 3 1395 21 0 0 0 chr1 106299216 106299237 -90896195 + AT_rich Low_complexity Low_complexity 1 21 0 3 1395 775 125 25 0 chr1 106299238 106299358 -90896074 - RMER16-int LTR ERVK -4189 1217 1095 3 174 401 131 0 0 chr1 106299349 106299410 -90896022 - RMER16-int LTR ERVK -4520 886 826 3 1396 693 142 134 0 chr1 106299422 106299549 -90895883 - RMER16-int LTR ERVK -5089 317 174 3 1396 1157 141 83 37 chr1 106300315 106300674 -90894758 - LTRIS5 LTR ERV1 -3 509 1 3 1396 372 190 0 77 chr1 106300681 106300772 -90894660 - RMER3D-int LTR ERVK -2106 736 653 3 1396 591 284 104 39 chr1 106300772 106300864 -90894568 + RLTR10D LTR ERVK 1 96 -263 3 1396 363 35 17 0 chr1 106300864 106300922 -90894510 - L1Md_F2 LINE L1 0 6582 6524 3 1396 591 284 104 39 chr1 106300922 106301166 -90894266 + RLTR10D LTR ERVK 97 358 -1 3 1396 477 198 20 0 chr1 106301227 106301328 -90894104 + IAP-d-int LTR ERVK 39 141 -6401 3 1396 8014 286 33 26 chr1 106301352 106304267 -90891165 + IAP-d-int LTR ERVK 3148 6083 -459 3 1396 1491 208 34 37 chr1 106304262 106304616 -90890816 + IAP-d-int LTR ERVK 6190 6542 0 3 1396 760 291 71 48 chr1 106304616 106304967 -90890465 + RLTR10D LTR ERVK 1 359 0 3 1396 445 169 0 6 chr1 106304989 106305078 -90890354 - RMER3D-int LTR ERVK -2278 564 489 3 1396 2937 65 52 0 chr1 106305483 106305883 -90889549 - BGLII LTR ERVK 0 421 1 3 1396 4778 138 60 1 chr1 106305883 106307053 -90888379 - L1VL2 LINE L1 -2320 1295 52 3 1396 44 0 0 0 chr1 106307999 106308043 -90887389 + AT_rich Low_complexity Low_complexity 1 44 0 3 1396 365 86 17 0 chr1 106308543 106308601 -90886831 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3 1396 1080 198 101 0 chr1 106308725 106308963 -90886469 - RLTR22_Mur LTR ERVK 0 1848 1587 3 1396 3947 179 78 58 chr1 106309126 106309861 -90885571 - RLTR22_Mur LTR ERVK -873 975 180 3 1396 658 110 7 14 chr1 106309861 106309999 -90885433 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 3 1396 243 88 0 0 chr1 106309999 106310033 -90885399 + (CATA)n Simple_repeat Simple_repeat 1 34 0 3 1396 312 48 0 0 chr1 106310040 106310082 -90885350 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 3 1396 3947 179 78 58 chr1 106310082 106310292 -90885140 - RLTR22_Mur LTR ERVK -1672 176 3 3 1396 657 47 0 0 chr1 106310541 106310626 -90884806 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1396 269 318 44 58 chr1 106312129 106312266 -90883166 - MER77 LTR ERVL -76 531 397 3 1396 1206 124 32 0 chr1 106314464 106314650 -90880782 + B2_Mm2 SINE B2 1 192 -3 3 1396 1107 80 0 0 chr1 106314653 106314804 -90880628 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 3 1396 1596 303 33 102 chr1 106315187 106315602 -90879830 + Lx8 LINE L1 6402 6773 -700 3 1396 360 0 0 0 chr1 106315602 106315642 -90879790 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1396 1596 303 33 102 chr1 106315642 106315961 -90879471 + Lx8 LINE L1 6774 7085 -388 3 1396 289 359 14 51 chr1 106315973 106316111 -90879321 + Lx8 LINE L1 7198 7330 -143 3 1396 350 346 85 43 chr1 106317169 106317567 -90877865 - L1MD LINE L1 -1978 4168 3754 3 1396 438 269 35 66 chr1 106317605 106317864 -90877568 - L1MCa LINE L1 -2480 3841 3591 3 1396 533 234 298 0 chr1 106317866 106318118 -90877314 - L1MCa LINE L1 -3328 2993 2667 3 1396 287 132 37 19 chr1 106318266 106318320 -90877112 - Lx9 LINE L1 -189 7455 7401 3 1396 601 272 0 0 chr1 106318323 106318470 -90876962 + Lx9 LINE L1 7249 7395 -249 3 1396 543 325 25 20 chr1 106318507 106318708 -90876724 - B3 SINE B2 -14 202 1 3 1396 260 267 66 13 chr1 106318758 106318834 -90876598 - L1MCa LINE L1 -6105 403 324 3 1396 429 66 0 0 chr1 106319066 106319127 -90876305 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1396 607 317 25 56 chr1 106319687 106319971 -90875461 - B4A SINE B4 -14 278 4 3 1396 261 146 0 0 chr1 106319983 106320031 -90875401 + (TTTAA)n Simple_repeat Simple_repeat 3 50 0 3 1396 204 250 0 0 chr1 106320430 106320478 -90874954 + A-rich Low_complexity Low_complexity 1 48 0 3 1396 22 0 0 0 chr1 106322568 106322590 -90872842 + AT_rich Low_complexity Low_complexity 1 22 0 4 1396 469 319 79 42 chr1 106323090 106323280 -90872152 - B3A SINE B2 -1 197 1 4 1396 28 0 0 0 chr1 106325026 106325054 -90870378 + AT_rich Low_complexity Low_complexity 1 28 0 4 1396 228 400 0 0 chr1 106326039 106326114 -90869318 + ID4 SINE ID 9 83 0 4 1396 754 271 33 6 chr1 106326335 106326517 -90868915 - ORR1D1 LTR MaLR -187 187 1 4 1396 202 299 0 0 chr1 106326521 106326618 -90868814 + T-rich Low_complexity Low_complexity 1 97 0 4 1396 1127 82 0 0 chr1 106326619 106326765 -90868667 - B1_Mm SINE Alu 0 147 2 4 1396 833 364 80 7 chr1 106326810 106327545 -90867887 + Lx9 LINE L1 6820 7608 -36 4 1396 596 257 96 13 chr1 106328498 106328594 -90866838 + L1_Mur2 LINE L1 892 990 -6096 4 1396 2338 126 58 11 chr1 106328594 106328972 -90866460 + MTA_Mm LTR MaLR 1 396 0 4 1396 10534 206 84 66 chr1 106328972 106331424 -90864008 + L1_Mur2 LINE L1 991 3483 -2394 4 1396 944 131 0 12 chr1 106331424 106331586 -90863846 + (GGAA)n Simple_repeat Simple_repeat 2 161 0 4 1396 10534 204 51 69 chr1 106331586 106332286 -90863146 + L1_Mur2 LINE L1 3484 4181 -1696 4 1396 387 60 0 0 chr1 106332307 106332357 -90863075 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1396 805 256 116 6 chr1 106332403 106332663 -90862769 - Lx5 LINE L1 -802 6658 6149 4 1396 1322 204 39 41 chr1 106332652 106333016 -90862416 + L1_Mur3 LINE L1 2286 2648 -3232 4 1396 2272 223 61 39 chr1 106333027 106333737 -90861695 + L1_Mur3 LINE L1 4007 4731 -1149 4 1396 33306 81 5 5 chr1 106333752 106339246 -90856186 + L1Md_Gf LINE L1 293 5886 0 4 1396 933 93 93 0 chr1 106339250 106339400 -90856032 + L1_Mm LINE L1 5117 5280 -603 4 1396 5275 74 3 1 chr1 106339403 106340096 -90855336 + L1Md_F2 LINE L1 5889 6582 0 4 1396 2743 210 14 63 chr1 106340101 106340489 -90854943 + L1_Mur3 LINE L1 5006 5371 -509 4 1396 1055 92 7 0 chr1 106340489 106340630 -90854802 + B1_Mm SINE Alu 5 146 -1 4 1396 2743 210 14 63 chr1 106340630 106341014 -90854418 + L1_Mur3 LINE L1 5372 5740 -140 4 1396 1162 220 42 8 chr1 106341021 106341259 -90854173 - ORR1B1 LTR MaLR 0 394 149 4 1396 438 75 0 0 chr1 106341337 106341404 -90854028 + (A)n Simple_repeat Simple_repeat 1 67 0 4 1396 324 143 0 0 chr1 106341473 106341543 -90853889 + (A)n Simple_repeat Simple_repeat 1 70 0 4 1396 460 370 66 27 chr1 106342258 106342700 -90852732 - LTR80B LTR ERVL -6 578 120 4 1396 209 33 33 0 chr1 106343128 106343158 -90852274 + (GAA)n Simple_repeat Simple_repeat 2 32 0 4 1396 1308 79 0 0 chr1 106343158 106343336 -90852096 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 1396 510 17 0 0 chr1 106343444 106343503 -90851929 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 4 1396 2291 230 154 12 chr1 106343577 106344215 -90851217 - Lx9 LINE L1 -734 6910 6183 4 1396 459 0 0 0 chr1 106344217 106344268 -90851164 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1396 24 0 0 0 chr1 106344367 106344391 -90851041 + AT_rich Low_complexity Low_complexity 1 24 0 4 1396 755 271 77 26 chr1 106344612 106344885 -90850547 + Lx8 LINE L1 5457 5743 -104 4 1396 1557 70 23 0 chr1 106345000 106345215 -90850217 - L1_Mus1 LINE L1 -1 6566 6347 4 1396 1268 320 50 39 chr1 106345219 106345859 -90849573 + Lx8 LINE L1 5783 6429 -1044 4 1396 466 390 48 3 chr1 106345895 106346232 -90849200 + Lx8 LINE L1 6969 7320 -153 4 1396 5551 105 30 35 chr1 106346302 106347213 -90848219 - RMER17A2 LTR ERVK 0 906 1 4 1396 336 321 137 6 chr1 106347348 106347643 -90847789 + Lx8 LINE L1 6967 7316 -157 4 1396 384 291 211 11 chr1 106347950 106348235 -90847197 + L1ME2z LINE L1 5690 6031 -413 4 1396 243 0 0 0 chr1 106348603 106348630 -90846802 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1396 316 355 86 39 chr1 106349058 106349337 -90846095 + L1MC4 LINE L1 7562 7853 -189 4 1396 1065 355 53 42 chr1 106349413 106350056 -90845376 - MER82 DNA MER2_type -1 652 3 4 1396 3455 75 0 41 chr1 106350065 106350549 -90844883 + L1_Mus2 LINE L1 6103 6566 0 4 1396 17920 68 6 72 chr1 106350717 106354316 -90841116 - L1Md_F2 LINE L1 -13 6569 3237 4 1396 5265 71 14 11 chr1 106354410 106355121 -90840311 + L1Md_F2 LINE L1 5856 6568 -14 4 1396 890 349 7 4 chr1 106355252 106355522 -90839910 + B4 SINE B4 10 280 -12 4 1396 378 0 0 0 chr1 106355610 106355652 -90839780 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1396 278 271 165 18 chr1 106356501 106356676 -90838756 - MIRc SINE MIR -42 226 19 4 1396 1085 80 0 0 chr1 106356840 106356978 -90838454 + B1_Mm SINE Alu 2 139 -8 4 1396 230 0 33 0 chr1 106356978 106357008 -90838424 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1396 1257 274 28 25 chr1 106357021 106357377 -90838055 + ORR1D1 LTR MaLR 6 362 -12 4 1396 257 109 0 21 chr1 106357504 106357551 -90837881 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 1396 180 0 0 0 chr1 106358011 106358031 -90837401 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4 1396 270 281 155 21 chr1 106359264 106359406 -90836026 - MIR SINE MIR -27 235 75 4 1396 387 193 0 0 chr1 106362182 106362270 -90833162 + C-rich Low_complexity Low_complexity 4 91 0 4 1396 250 270 22 11 chr1 106362821 106362911 -90832521 + CT-rich Low_complexity Low_complexity 3 93 0 4 1396 23 86 0 0 chr1 106363285 106363343 -90832089 + AT_rich Low_complexity Low_complexity 1 58 0 4 1396 32 43 0 0 chr1 106363383 106363429 -90832003 + AT_rich Low_complexity Low_complexity 1 46 0 4 1396 352 309 110 45 chr1 106364000 106364200 -90831232 - B3 SINE B2 0 216 4 4 1396 1179 217 143 40 chr1 106364232 106364582 -90830850 - RLTR41 LTR ERV1 0 446 61 4 1396 220 125 0 48 chr1 106364640 106364682 -90830750 + CT-rich Low_complexity Low_complexity 2 41 0 4 1396 1033 308 222 32 chr1 106366363 106366741 -90828691 - L2 LINE L2 -411 3008 2586 4 1396 228 35 0 0 chr1 106366741 106366770 -90828662 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1396 1033 308 222 32 chr1 106366770 106367364 -90828068 - L2 LINE L2 -834 2585 1851 4 1396 225 0 0 0 chr1 106368273 106368298 -90827134 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1396 573 301 106 49 chr1 106368476 106369383 -90826049 - L1MA4 LINE L1 -373 5927 4979 4 1396 983 94 7 0 chr1 106369383 106369521 -90825911 - B1_Mus1 SINE Alu -9 139 1 4 1396 330 259 49 12 chr1 106369521 106369622 -90825810 - L1MA4 LINE L1 -1153 4993 4853 4 1396 460 191 0 0 chr1 106370039 106370123 -90825309 + RMER17C LTR ERVK 1 84 -326 4 1396 14930 115 36 4 chr1 106370143 106370558 -90824874 + L1VL4 LINE L1 953 1383 -2531 4 1396 2865 106 5 0 chr1 106370558 106370956 -90824476 + MTB LTR MaLR 1 400 0 4 1396 14930 123 23 7 chr1 106370956 106373705 -90821727 + L1VL4 LINE L1 1381 4174 -1709 4 1396 6270 151 17 7 chr1 106373694 106374880 -90820552 + Lx2 LINE L1 5445 6643 -354 4 1396 1199 169 9 0 chr1 106374880 106375099 -90820333 + Lx2 LINE L1 6775 6995 -2 4 1396 800 230 93 9 chr1 106375118 106375171 -90820261 + RMER17C LTR ERVK 178 231 -179 4 1396 522 0 0 0 chr1 106375171 106375229 -90820203 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1396 800 230 93 9 chr1 106375229 106375258 -90820174 + RMER17C LTR ERVK 232 260 -150 4 1396 774 64 0 0 chr1 106375258 106375367 -90820065 + (CTATA)n Simple_repeat Simple_repeat 1 109 0 4 1396 800 230 93 9 chr1 106375367 106375498 -90819934 + RMER17C LTR ERVK 261 406 -4 4 1396 453 36 0 0 chr1 106377198 106377253 -90818179 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1396 378 0 0 0 chr1 106377974 106378016 -90817416 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1396 240 197 16 0 chr1 106378189 106378233 -90817199 + CT-rich Low_complexity Low_complexity 19 63 0 4 1396 571 224 0 45 chr1 106378233 106378387 -90817045 - B1_Mur2 SINE Alu 0 149 3 4 1396 240 197 16 0 chr1 106378387 106378403 -90817029 + polypyrimidine Low_complexity Low_complexity 3 18 0 4 1396 292 304 148 6 chr1 106378547 106378729 -90816703 - MER3 DNA MER1_type 0 209 2 4 1396 744 97 0 0 chr1 106378894 106379018 -90816414 + (TC)n Simple_repeat Simple_repeat 2 125 0 4 1396 351 0 0 0 chr1 106379018 106379056 -90816376 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1396 852 97 0 0 chr1 106379426 106379550 -90815882 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1396 325 282 0 8 chr1 106379609 106379734 -90815698 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1396 456 117 0 0 chr1 106379754 106379831 -90815601 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1396 290 170 0 62 chr1 106379902 106380015 -90815417 + T-rich Low_complexity Low_complexity 1 106 0 4 1396 1045 105 0 7 chr1 106380015 106380159 -90815273 - B1_Mus2 SINE Alu 0 147 5 4 1396 308 389 122 24 chr1 106380557 106380844 -90814588 - MLT1J-int LTR MaLR -447 940 626 4 1396 6922 115 11 16 chr1 106381544 106382589 -90812843 - Lx LINE L1 -3 6651 5613 4 1396 1194 182 0 24 chr1 106382589 106382797 -90812635 + 7SK RNA RNA 46 248 -83 4 1396 320 291 184 43 chr1 106382957 106383284 -90812148 - L1MB1 LINE L1 -1 6167 5795 4 1396 11993 124 30 10 chr1 106383348 106385972 -90809460 + L1_Mur1 LINE L1 100 3276 -2601 4 1396 7479 72 38 1 chr1 106385972 106386959 -90808473 + RLTR13D5 LTR ERVK 1 1023 0 4 1396 10302 198 73 17 chr1 106386959 106387494 -90807938 + L1_Mur1 LINE L1 3277 3821 -2056 4 1396 420 260 75 37 chr1 106387512 106387672 -90807760 + RLTR9A LTR ERVK 213 388 -32 4 1396 2857 219 15 39 chr1 106387900 106387942 -90807490 + ETnERV2-int LTR ERVK 4220 4260 -3146 4 1396 950 82 27 0 chr1 106387942 106388089 -90807343 + L1_Mus1 LINE L1 6415 6565 -2 4 1396 2857 219 15 39 chr1 106388089 106388641 -90806791 + ETnERV2-int LTR ERVK 4261 4800 -2606 4 1396 6437 97 5 21 chr1 106388641 106389994 -90805438 + L1_Mus2 LINE L1 5120 6437 -129 4 1396 7997 116 83 27 chr1 106389992 106391964 -90803468 + Lx3A LINE L1 4892 6981 0 4 1396 527 0 16 0 chr1 106391966 106392029 -90803403 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 4 1396 1020 40 0 0 chr1 106392034 106392159 -90803273 + (GAGAA)n Simple_repeat Simple_repeat 5 129 0 4 1396 198 0 0 0 chr1 106393622 106393644 -90801788 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4 1396 481 294 82 4 chr1 106393896 106394128 -90801304 + L1MA9 LINE L1 5759 6008 -304 4 1396 323 223 95 40 chr1 106394650 106394776 -90800656 + Lx4B LINE L1 6922 7054 -4 4 1396 333 0 0 0 chr1 106395739 106395776 -90799656 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1396 1582 132 14 134 chr1 106395984 106396334 -90799098 + Lx2A LINE L1 6696 7003 -5 4 1396 197 59 59 0 chr1 106396614 106396648 -90798784 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 4 1396 1116 89 0 0 chr1 106396746 106396926 -90798506 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 4 1396 285 197 0 0 chr1 106396964 106397030 -90798402 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 4 1396 726 286 57 14 chr1 106397418 106397627 -90797805 + B4A SINE B4 4 221 -71 4 1396 514 284 133 35 chr1 106397649 106397875 -90797557 - Lx8 LINE L1 -133 7340 7093 4 1396 1103 286 80 127 chr1 106397891 106398218 -90797214 - MTC LTR MaLR -14 407 126 4 1396 378 0 0 0 chr1 106398218 106398260 -90797172 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5 1396 1103 286 80 127 chr1 106398260 106398356 -90797076 - MTC LTR MaLR -296 125 5 4 1396 711 289 42 34 chr1 106398538 106398774 -90796658 + Lx8 LINE L1 6211 6448 -1025 5 1396 994 271 102 7 chr1 106398798 106399102 -90796330 + Lx8 LINE L1 6743 7075 -398 5 1396 387 41 0 0 chr1 106400521 106400570 -90794862 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1396 1070 251 25 158 chr1 106401441 106401619 -90793813 + ORR1D1 LTR MaLR 1 156 -218 5 1396 771 11 0 0 chr1 106401619 106401707 -90793725 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1396 324 0 0 0 chr1 106401707 106401742 -90793690 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1396 1070 251 25 158 chr1 106401742 106401993 -90793439 + ORR1D1 LTR MaLR 157 373 -1 5 1396 3694 250 75 63 chr1 106401993 106403183 -90792249 + ORR1D1-int LTR MaLR 1 1204 -166 5 1396 1485 174 23 49 chr1 106403183 106403491 -90791941 - Lx4A LINE L1 0 7058 6759 5 1396 253 130 87 0 chr1 106403513 106403559 -90791873 + L1_Mm LINE L1 5499 5548 -335 5 1396 943 196 5 10 chr1 106403543 106403739 -90791693 + Lx4A LINE L1 5602 5796 -1262 5 1396 819 214 40 0 chr1 106403744 106403917 -90791515 + ORR1D1-int LTR MaLR 1189 1368 -2 5 1396 583 243 50 63 chr1 106403917 106404227 -90791205 + ORR1D1 LTR MaLR 81 310 -74 5 1396 610 299 95 41 chr1 106404228 106404545 -90790887 + RLTR14 LTR ERV1 5 338 -44 5 1396 401 208 21 1 chr1 106404580 106404674 -90790758 + ORR1D1 LTR MaLR 270 382 -2 5 1396 958 57 14 7 chr1 106404769 106404910 -90790522 + MusHAL1 LINE L1 325 466 -2246 5 1396 1451 128 188 10 chr1 106404913 106405206 -90790226 - IAPLTR4 LTR ERVK 0 345 1 5 1396 29342 81 3 1 chr1 106405206 106409218 -90786214 + L1_Mm LINE L1 1663 5686 -197 5 1396 519 211 17 26 chr1 106410931 106411048 -90784384 + ID_B1 SINE B4 109 224 0 5 1396 232 157 53 105 chr1 106410997 106411054 -90784378 + PB1D10 SINE Alu 64 117 0 5 1396 411 342 30 43 chr1 106411739 106411974 -90783458 + MER96B DNA hAT 3 234 -183 5 1396 53 17 0 0 chr1 106412263 106412323 -90783109 + AT_rich Low_complexity Low_complexity 1 60 0 5 1396 4866 213 72 30 chr1 106412323 106413714 -90781718 - L1_Rod LINE L1 -3182 2665 1216 5 1396 343 229 29 18 chr1 106414748 106414994 -90780438 + RMER17D LTR ERVK 221 499 -390 5 1396 478 292 33 63 chr1 106415601 106415823 -90779609 + ORR1E LTR MaLR 24 239 -139 5 1396 991 99 0 0 chr1 106415998 106416129 -90779303 + B1_Mus1 SINE Alu 3 133 -15 5 1396 934 318 94 38 chr1 106416131 106416576 -90778856 - Lx8 LINE L1 -25 7448 6979 5 1396 487 191 8 25 chr1 106416681 106416799 -90778633 - Lx9 LINE L1 -9 7635 7520 5 1396 898 255 8 13 chr1 106417027 106417261 -90778171 + L1_Rod LINE L1 332 564 -6608 5 1396 2021 203 53 5 chr1 106417277 106417673 -90777759 + MTC LTR MaLR 7 421 0 5 1396 705 234 54 0 chr1 106417673 106417857 -90777575 + L1_Rod LINE L1 571 764 -6408 5 1396 1211 127 19 24 chr1 106418718 106418928 -90776504 - Lx LINE L1 -7 6647 6439 5 1396 206 45 0 118 chr1 106420128 106420204 -90775228 + (GTTTG)n Simple_repeat Simple_repeat 3 69 0 5 1396 314 209 23 8 chr1 106420476 106420606 -90774826 + (TA)n Simple_repeat Simple_repeat 2 133 0 5 1396 240 86 0 0 chr1 106420611 106420646 -90774786 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1396 1155 62 0 7 chr1 106421627 106421774 -90773658 - B1_Mus1 SINE Alu 0 148 3 5 1396 205 367 19 58 chr1 106421774 106421930 -90773502 + MIR SINE MIR 97 246 -16 5 1396 532 322 84 13 chr1 106422309 106422737 -90772695 - MLT1D LTR MaLR -1 466 7 5 1396 407 310 81 85 chr1 106423079 106423325 -90772107 - MLT2B1 LTR ERVL -167 353 109 5 1396 1697 170 33 33 chr1 106423325 106423512 -90771920 + ORR1B1 LTR MaLR 1 180 -214 5 1396 1000 110 15 0 chr1 106423512 106423648 -90771784 + B1_Mus1 SINE Alu 1 138 -10 5 1396 306 50 0 0 chr1 106423648 106423688 -90771744 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1396 1697 170 33 33 chr1 106423688 106423834 -90771598 + ORR1B1 LTR MaLR 181 334 -60 5 1396 1973 98 23 17 chr1 106423857 106424157 -90771275 - Lx3_Mus LINE L1 0 7009 6708 5 1396 397 105 0 0 chr1 106424218 106424275 -90771157 + ORR1A4 LTR MaLR 270 326 -3 5 1396 562 301 51 56 chr1 106424817 106425032 -90770400 - RMER15 LTR ERVL -38 537 324 5 1396 290 256 0 37 chr1 106425280 106425361 -90770071 + L1MD2 LINE L1 5925 6002 -357 5 1396 213 39 0 0 chr1 106426915 106426941 -90768491 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1396 450 0 0 0 chr1 106426960 106427010 -90768422 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1396 547 293 67 71 chr1 106427043 106427326 -90768106 - B4A SINE B4 -8 284 3 5 1396 555 43 0 0 chr1 106427617 106427687 -90767745 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1396 604 348 126 42 chr1 106428348 106428705 -90766727 - MLT2B2 LTR ERVL 0 515 129 5 1396 230 81 27 0 chr1 106428709 106428746 -90766686 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 5 1396 298 354 56 75 chr1 106428776 106428990 -90766442 + ID_B1 SINE B4 6 215 -9 5 1396 269 235 182 10 chr1 106429012 106429111 -90766321 - MLT2B2 LTR ERVL -440 116 1 5 1396 812 69 0 8 chr1 106430277 106430394 -90765038 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 5 174 358 307 107 102 chr1 106430403 106430766 -90764666 - MLT2D LTR ERVL -48 366 2 5 1397 749 21 11 0 chr1 106431255 106431350 -90764082 + (TC)n Simple_repeat Simple_repeat 1 96 0 5 1397 432 0 0 0 chr1 106431351 106431399 -90764033 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1397 3355 128 2 24 chr1 106432116 106432651 -90762781 - Lx LINE L1 -9 6645 6123 5 1397 1053 118 50 0 chr1 106433196 106433357 -90762075 + L1_Mus3 LINE L1 6397 6565 -73 5 1397 243 0 0 0 chr1 106433386 106433413 -90762019 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1397 205 333 142 66 chr1 106433434 106433617 -90761815 - MIR3 SINE MIR 0 208 12 5 1397 3313 96 2 2 chr1 106434519 106434970 -90760462 - L1_Mus2 LINE L1 -28 6538 6088 5 1397 23 0 0 0 chr1 106435118 106435141 -90760291 + AT_rich Low_complexity Low_complexity 1 23 0 5 1397 358 353 19 28 chr1 106436010 106436223 -90759209 + B3 SINE B2 1 211 -5 5 1397 720 122 84 0 chr1 106438165 106438296 -90757136 + Lx LINE L1 6501 6642 -12 5 1397 216 0 0 0 chr1 106438299 106438323 -90757109 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1397 307 261 200 13 chr1 106438336 106438491 -90756941 + RMER15 LTR ERVL 392 575 0 5 1397 183 42 0 0 chr1 106439397 106439421 -90756011 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 5 1397 248 330 123 76 chr1 106440704 106441087 -90754345 + MLT1H2 LTR MaLR 47 447 -42 5 1397 336 381 0 23 chr1 106441103 106441232 -90754200 + B4 SINE B4 6 131 -161 5 1397 408 200 0 0 chr1 106441350 106441440 -90753992 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 1397 905 127 44 26 chr1 106442542 106442883 -90752549 + (TAGA)n Simple_repeat Simple_repeat 1 347 0 5 1397 356 40 0 20 chr1 106442886 106442937 -90752495 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1397 181 246 172 17 chr1 106443458 106443516 -90751916 + L3 LINE CR1 3821 3887 -602 5 1397 1614 252 16 70 chr1 106444116 106444559 -90750873 - MTD LTR MaLR 0 419 1 5 1397 333 0 0 0 chr1 106445039 106445076 -90750356 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1397 5436 160 80 7 chr1 106445586 106446606 -90748826 - RLTR25A LTR ERVK 0 1103 9 5 1397 739 284 65 16 chr1 106446594 106446780 -90748652 - ID_B1 SINE B4 -29 195 1 5 1397 306 0 0 0 chr1 106447475 106447509 -90747923 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1397 1461 139 16 1 chr1 106447633 106447900 -90747532 - Lx LINE L1 0 6636 6347 5 1397 412 123 0 15 chr1 106447899 106447965 -90747467 + Lx LINE L1 6302 6366 -288 5 1397 348 153 19 8 chr1 106450098 106450187 -90745245 - L1_Mus3 LINE L1 -22 6616 6548 5 1397 1968 179 14 19 chr1 106450203 106450573 -90744859 - Lx4A LINE L1 -2 7056 6689 5 1397 631 180 11 22 chr1 106450682 106450864 -90744568 + CT-rich Low_complexity Low_complexity 1 180 0 5 1397 2067 183 58 30 chr1 106451213 106451680 -90743752 + RLTR11A2 LTR ERVK 48 527 0 5 1397 342 134 0 0 chr1 106451881 106451948 -90743484 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 1397 259 329 0 24 chr1 106452495 106452579 -90742853 - B1F2 SINE Alu -58 91 10 5 1397 463 243 159 20 chr1 106453070 106453221 -90742211 - Lx2B LINE L1 -18 6982 6811 5 1397 1556 189 7 7 chr1 106453224 106453527 -90741905 + Lx2B LINE L1 6243 6545 -455 5 1397 21 0 0 0 chr1 106454283 106454304 -90741128 + AT_rich Low_complexity Low_complexity 1 21 0 5 1397 9904 176 7 64 chr1 106454313 106454565 -90740867 - L1VL2 LINE L1 -2583 3300 3064 5 1397 1473 0 14 0 chr1 106454565 106454779 -90740653 + (TTC)n Simple_repeat Simple_repeat 1 216 0 5 1397 11587 122 113 12 chr1 106454779 106457263 -90738169 - L1VL2 LINE L1 -2820 3063 366 5 1397 4980 120 29 79 chr1 106457264 106458270 -90737162 - L1VL2 LINE L1 -5510 825 9 5 1397 2910 85 163 2 chr1 106459542 106459986 -90735446 - L1_Mus3 LINE L1 -255 6383 5860 5 1397 237 33 0 0 chr1 106459986 106460016 -90735416 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1397 2111 71 48 0 chr1 106460016 106460258 -90735174 - L1_Mus3 LINE L1 -779 5859 5615 5 1397 1676 125 26 4 chr1 106460258 106460524 -90734908 + L1_Mus3 LINE L1 6353 6624 -14 5 1397 349 36 36 0 chr1 106460524 106460579 -90734853 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1397 23 0 0 0 chr1 106460663 106460686 -90734746 + AT_rich Low_complexity Low_complexity 1 23 0 5 1397 311 333 32 64 chr1 106461604 106461729 -90733703 + ID_B1 SINE B4 73 193 -31 5 1397 478 191 0 50 chr1 106461716 106461815 -90733617 + B1_Mur2 SINE Alu 49 142 -7 5 1397 5479 77 0 1 chr1 106461823 106462541 -90732891 + L1_Mus1 LINE L1 5851 6567 0 5 1397 208 151 0 54 chr1 106462557 106462613 -90732819 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1397 1864 266 68 2 chr1 106464353 106464809 -90730623 - Lx6 LINE L1 -19 7441 6956 5 1397 4763 44 8 1 chr1 106464790 106465483 -90729949 - L1Md_F3 LINE L1 -610 5974 5272 5 1397 342 183 99 0 chr1 106465452 106465523 -90729909 - Lx7 LINE L1 -726 6970 6893 5 1397 471 147 0 0 chr1 106465523 106465625 -90729807 + (TC)n Simple_repeat Simple_repeat 2 103 0 5 1397 4915 235 41 21 chr1 106465638 106466351 -90729081 - Lx6 LINE L1 -568 6892 6176 5 1397 423 0 0 0 chr1 106466351 106466398 -90729034 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1397 4915 235 41 21 chr1 106466398 106466909 -90728523 - Lx6 LINE L1 -1285 6175 5644 5 1397 331 328 116 101 chr1 106467005 106467512 -90727920 + RMER20B LTR ERVK 3 516 0 6 1397 1075 95 0 0 chr1 106467730 106467877 -90727555 - B1_Mus1 SINE Alu 0 148 2 6 1397 1086 226 204 20 chr1 106467912 106468264 -90727168 + RMER1C Other Other 864 1280 -62 6 1397 1779 124 85 0 chr1 106468292 106468574 -90726858 - ORR1A2 LTR MaLR -21 306 1 6 1397 444 67 0 0 chr1 106468838 106468898 -90726534 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1397 543 320 49 76 chr1 106468985 106469208 -90726224 - B4A SINE B4 -72 220 4 6 1397 691 133 62 0 chr1 106469405 106469518 -90725914 + PB1D9 SINE Alu 1 120 0 6 1397 192 40 0 0 chr1 106469914 106469939 -90725493 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1397 464 0 18 0 chr1 106470284 106470340 -90725092 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1397 374 39 19 0 chr1 106470532 106470584 -90724848 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1397 306 0 0 0 chr1 106470778 106470812 -90724620 + (TTG)n Simple_repeat Simple_repeat 1 34 0 6 1397 279 79 0 0 chr1 106470812 106470850 -90724582 + (ATG)n Simple_repeat Simple_repeat 2 39 0 6 1397 356 40 20 0 chr1 106471810 106471860 -90723572 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1397 421 348 6 64 chr1 106472675 106472847 -90722585 + RSINE1 SINE B4 4 165 0 6 1397 204 125 0 0 chr1 106472851 106472883 -90722549 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1397 587 352 50 0 chr1 106473291 106473470 -90721962 + B4A SINE B4 13 200 -92 6 1397 921 291 107 16 chr1 106473729 106474113 -90721319 - MTD LTR MaLR 0 419 1 6 1397 225 65 0 0 chr1 106474201 106474232 -90721200 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1397 369 0 0 0 chr1 106475147 106475188 -90720244 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1397 24 0 0 0 chr1 106475891 106475915 -90719517 + AT_rich Low_complexity Low_complexity 1 24 0 6 1397 514 279 6 75 chr1 106476363 106476537 -90718895 + RSINE1 SINE B4 4 165 0 6 1397 348 118 0 0 chr1 106476538 106476606 -90718826 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1397 750 330 151 66 chr1 106477022 106477506 -90717926 - MLT1F2 LTR MaLR 0 548 24 6 1397 2860 18 2 204 chr1 106477739 106478228 -90717204 - RLTR10 LTR ERVK 0 390 1 6 1397 16290 19 5 51 chr1 106478230 106480266 -90715166 - RLTR10-int LTR ERVK -3 1984 41 6 1397 2781 26 2 204 chr1 106480276 106480765 -90714667 - RLTR10 LTR ERVK 0 390 1 6 1397 243 0 0 0 chr1 106481267 106481294 -90714138 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1397 243 0 0 0 chr1 106482963 106482990 -90712442 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1397 420 20 0 0 chr1 106484150 106484199 -90711233 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1397 25 31 0 0 chr1 106484578 106484610 -90710822 + AT_rich Low_complexity Low_complexity 1 32 0 6 1397 281 217 28 28 chr1 106485167 106485238 -90710194 + ID4_ SINE ID 3 73 -10 6 1397 288 266 31 0 chr1 106485193 106485257 -90710175 + ID_B1 SINE B4 29 94 -130 6 1397 1276 253 54 3 chr1 106485262 106485575 -90709857 + Lx9 LINE L1 6978 7306 -338 6 1397 651 185 124 11 chr1 106485598 106485784 -90709648 + Lx9 LINE L1 7431 7637 -7 6 1397 270 193 0 0 chr1 106485883 106485940 -90709492 + GA-rich Low_complexity Low_complexity 1 57 0 6 1397 607 287 162 39 chr1 106486643 106487006 -90708426 + MLT1C LTR MaLR 60 467 0 6 1397 376 265 100 47 chr1 106487237 106487407 -90708025 - B2_Mm2 SINE B2 -9 186 8 6 1397 217 267 72 54 chr1 106487508 106487619 -90707813 - L2c LINE L2 -1 3386 3274 6 1397 1688 223 68 8 chr1 106487619 106488016 -90707416 - MTC LTR MaLR 0 421 1 6 1397 2954 223 62 74 chr1 106488729 106489556 -90705876 - RLTR40 LTR ERVK 0 817 1 6 1397 297 286 0 0 chr1 106490326 106490410 -90705022 - MER34 LTR ERV1 -74 468 385 6 1397 314 98 20 0 chr1 106490596 106490647 -90704785 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1397 443 336 84 60 chr1 106490656 106490906 -90704526 - B4A SINE B4 -11 281 26 6 1397 471 18 0 0 chr1 106491096 106491152 -90704280 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1397 306 314 0 40 chr1 106491915 106492041 -90703391 + GA-rich Low_complexity Low_complexity 3 123 0 6 1397 1320 241 58 69 chr1 106492442 106492626 -90702806 + ORR1D1 LTR MaLR 1 164 -210 6 1397 504 0 0 0 chr1 106492626 106492682 -90702750 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1397 1320 241 58 69 chr1 106492682 106492875 -90702557 + ORR1D1 LTR MaLR 165 374 0 6 1397 241 292 61 20 chr1 106493678 106493776 -90701656 + RMER12 LTR ERVK 749 850 -472 6 1397 502 290 8 8 chr1 106493874 106493999 -90701433 + PB1 SINE Alu 1 125 -2 6 1397 27 29 0 0 chr1 106494109 106494143 -90701289 + AT_rich Low_complexity Low_complexity 1 34 0 6 1397 217 233 36 65 chr1 106494186 106494324 -90701108 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 6 1397 1031 62 25 0 chr1 106494813 106494974 -90700458 + (TG)n Simple_repeat Simple_repeat 2 166 0 6 1397 292 302 64 100 chr1 106495026 106495166 -90700266 - B4A SINE B4 -156 136 2 6 1397 207 317 33 0 chr1 106495189 106495249 -90700183 - L2a LINE L2 -307 3119 3058 6 1397 524 358 86 34 chr1 106495802 106496184 -90699248 - MER77 LTR ERVL -4 603 202 6 1397 1618 209 23 109 chr1 106496594 106496987 -90698445 + ORR1B2 LTR MaLR 1 359 -8 6 1397 706 335 60 32 chr1 106497198 106497482 -90697950 + B4A SINE B4 1 292 0 6 1397 682 304 46 0 chr1 106497601 106497795 -90697637 - ID_B1 SINE B4 0 224 22 6 1397 1502 186 50 11 chr1 106497928 106498248 -90697184 + ORR1B2 LTR MaLR 7 367 0 6 1397 5071 195 81 12 chr1 106498250 106499480 -90695952 + ORR1B2-int LTR MaLR 4 1795 -168 6 1397 1799 195 8 59 chr1 106499480 106499867 -90695565 + ORR1B2 LTR MaLR 1 367 0 6 1397 516 220 241 22 chr1 106500050 106500270 -90695162 + L1M2 LINE L1 4696 4944 -1199 1 1397 615 60 0 0 chr1 106500270 106500354 -90695078 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1397 276 30 0 0 chr1 106500354 106500386 -90695046 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1397 516 220 241 22 chr1 106500386 106500484 -90694948 + L1M2 LINE L1 4945 5084 -1059 1 1397 183 129 0 0 chr1 106500563 106500594 -90694838 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1397 221 291 24 37 chr1 106501180 106501262 -90694170 + MER5A DNA MER1_type 47 127 -62 5 1397 283 289 36 0 chr1 106501371 106501454 -90693978 - B4A SINE B4 -205 87 2 6 1397 384 332 80 5 chr1 106501589 106501789 -90693643 + Charlie10a DNA MER1_type 61 275 -5 7 1397 216 0 0 0 chr1 106503355 106503379 -90692053 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1397 204 40 0 0 chr1 106503538 106503563 -90691869 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1397 24 0 0 0 chr1 106503608 106503632 -90691800 + AT_rich Low_complexity Low_complexity 1 24 0 1 1397 611 271 104 37 chr1 106503673 106504433 -90690999 + L1MB3 LINE L1 4965 5773 -410 1 1397 901 268 91 48 chr1 106504492 106504908 -90690524 - RLTR11B LTR ERVK -16 437 4 1 1397 440 295 88 21 chr1 106504955 106505194 -90690238 + L1MB3 LINE L1 5926 6180 -3 1 1397 5377 161 33 10 chr1 106506284 106507247 -90688185 + Lx2 LINE L1 6012 6996 -1 1 1397 1250 153 4 13 chr1 106507930 106508162 -90687270 - Lx2B LINE L1 0 7000 6771 1 1397 3735 142 70 10 chr1 106508165 106508869 -90686563 + Lx2B LINE L1 5962 6707 -293 1 1397 207 69 0 0 chr1 106509110 106509139 -90686293 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1397 4035 161 78 79 chr1 106509157 106510047 -90685385 + RMER19B LTR ERVK 1 889 -13 1 1397 279 252 272 16 chr1 106510844 106510969 -90684463 - RSINE1 SINE B4 -6 159 3 1 1397 24 0 0 0 chr1 106511601 106511625 -90683807 + AT_rich Low_complexity Low_complexity 1 24 0 1 1397 23 33 0 0 chr1 106511814 106511844 -90683588 + AT_rich Low_complexity Low_complexity 1 30 0 1 1397 22 35 0 0 chr1 106511993 106512022 -90683410 + AT_rich Low_complexity Low_complexity 1 29 0 2 1397 466 303 96 50 chr1 106512340 106512621 -90682811 - MLT1C LTR MaLR 0 467 174 2 1397 25 31 0 0 chr1 106514946 106514978 -90680454 + AT_rich Low_complexity Low_complexity 1 32 0 2 1397 375 338 85 10 chr1 106515423 106515623 -90679809 + MLT1D LTR MaLR 226 440 -65 2 1397 324 0 0 0 chr1 106517129 106517165 -90678267 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1397 210 143 0 0 chr1 106517169 106517204 -90678228 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 1397 1426 109 74 4 chr1 106517506 106517737 -90677695 - L1_Mus4 LINE L1 -3 6633 6387 2 1397 1654 215 157 72 chr1 106518407 106518867 -90676565 + RMER2 LTR ERV1 1 499 -68 2 1397 21 57 0 0 chr1 106519125 106519160 -90676272 + AT_rich Low_complexity Low_complexity 1 35 0 2 1397 1053 88 0 0 chr1 106520308 106520445 -90674987 - B1_Mus2 SINE Alu -10 137 1 2 1397 261 228 17 17 chr1 106521359 106521417 -90674015 + ORR1E LTR MaLR 4 61 -298 3 1397 225 274 91 40 chr1 106521542 106521641 -90673791 + MTEb LTR MaLR 276 379 0 3 1397 889 69 138 0 chr1 106521751 106521881 -90673551 - B1_Mus1 SINE Alu 0 148 1 3 1397 243 218 0 13 chr1 106522122 106522201 -90673231 + Lx6 LINE L1 7381 7458 -2 3 1397 218 257 28 14 chr1 106522285 106522356 -90673076 + GA-rich Low_complexity Low_complexity 1 72 0 3 1397 298 259 39 108 chr1 106522565 106522695 -90672737 + AmnSINE1 SINE SINE 289 409 -166 3 1397 516 179 0 0 chr1 106523012 106523134 -90672298 + CT-rich Low_complexity Low_complexity 13 134 0 3 1397 1365 61 0 0 chr1 106523134 106523314 -90672118 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1397 516 179 0 0 chr1 106523314 106523325 -90672107 + polypyrimidine Low_complexity Low_complexity 2 12 0 3 1397 22 70 0 0 chr1 106523970 106524013 -90671419 + AT_rich Low_complexity Low_complexity 1 43 0 3 1397 516 304 137 46 chr1 106524590 106524852 -90670580 + B4A SINE B4 5 290 -2 4 1397 432 0 0 0 chr1 106524926 106524974 -90670458 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1397 219 139 0 0 chr1 106525091 106525127 -90670305 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1397 3067 202 46 46 chr1 106525205 106525962 -90669470 + RLTR40 LTR ERVK 10 766 -51 4 1397 1020 276 124 11 chr1 106526179 106526542 -90668890 - MTD LTR MaLR -15 404 1 4 1397 2417 53 74 12 chr1 106526656 106526980 -90668452 + L1_Mus1 LINE L1 6223 6566 -1 4 1397 21 57 0 0 chr1 106528529 106528564 -90666868 + AT_rich Low_complexity Low_complexity 1 35 0 4 1397 255 122 0 0 chr1 106529335 106529384 -90666048 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1397 2054 126 39 0 chr1 106530749 106531058 -90664374 + ORR1A4 LTR MaLR 1 321 -8 4 1397 270 0 0 0 chr1 106533466 106533496 -90661936 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1397 7712 39 6 1 chr1 106534220 106535780 -90659652 - L1Md_F2 LINE L1 -2 6580 5014 5 1397 4524 48 0 0 chr1 106535775 106536360 -90659072 + L1Md_F2 LINE L1 4431 5015 -868 5 1397 736 238 124 0 chr1 106537024 106537209 -90658223 + B3 SINE B2 3 210 -6 5 1397 210 37 0 0 chr1 106538057 106538084 -90657348 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1397 181 359 50 58 chr1 106538364 106538503 -90656929 - L2b LINE L2 0 3375 3238 5 1397 522 279 7 7 chr1 106538635 106538776 -90656656 - Lx8 LINE L1 -960 6513 6373 5 1397 8096 48 0 0 chr1 106538943 106539923 -90655509 + L1Md_F2 LINE L1 5591 6570 -12 5 1397 181 385 46 0 chr1 106539944 106540053 -90655379 - L2b LINE L2 -775 2644 2531 5 1397 329 354 0 17 chr1 106542127 106542305 -90653127 + CT-rich Low_complexity Low_complexity 2 176 0 5 1397 348 24 0 0 chr1 106542983 106543024 -90652408 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1397 283 200 24 167 chr1 106543324 106543534 -90651898 - RMER17C LTR ERVK -138 272 93 5 1397 224 317 99 46 chr1 106544497 106544649 -90650783 - MIR SINE MIR -96 166 7 5 1397 1092 252 42 98 chr1 106545274 106545674 -90649758 - MTE2a LTR MaLR -1 378 1 6 1397 650 222 40 107 chr1 106545705 106545892 -90649540 - B3 SINE B2 0 216 31 6 1397 380 266 21 0 chr1 106546045 106546139 -90649293 - B3A SINE B2 -102 96 1 6 1397 385 228 98 68 chr1 106546195 106546327 -90649105 - B1_Mur3 SINE Alu -9 140 5 6 1397 331 299 82 12 chr1 106546366 106546610 -90648822 - L1_Mur3 LINE L1 -1540 4340 4080 6 1397 7828 44 0 4 chr1 106546610 106547644 -90647788 - L1Md_F2 LINE L1 0 6582 5553 6 1397 5229 139 30 15 chr1 106547644 106548520 -90646912 + Lx LINE L1 5766 6654 0 6 1397 1607 137 94 75 chr1 106548676 106549078 -90646354 + RMER17C LTR ERVK 1 410 0 6 1397 837 248 190 63 chr1 106550428 106550859 -90644573 + MER67D LTR ERV1 1 486 -28 6 1397 1602 178 50 42 chr1 106551262 106551714 -90643718 - RMER17C LTR ERVK -517 441 16 6 1397 2597 59 2 184 chr1 106551944 106552418 -90643014 - RLTR10 LTR ERVK -2 388 1 7 1397 7964 34 4 2 chr1 106552418 106553413 -90642019 - RLTR10-int LTR ERVK -1 1986 990 7 1397 454 318 25 13 chr1 106553495 106553800 -90641632 - MMERVK10C-int LTR ERVK -5987 1594 1316 7 1397 4681 53 173 116 chr1 106553942 106554844 -90640588 - RLTR10-int LTR ERVK -995 992 40 7 1397 2587 48 96 0 chr1 106554855 106555209 -90640223 - RLTR10 LTR ERVK -2 388 1 7 1397 568 316 124 58 chr1 106556011 106556438 -90638994 + L1MC4 LINE L1 7319 7773 -269 7 1397 33588 84 5 9 chr1 106556655 106561279 -90634153 - L1Md_F2 LINE L1 -12 6570 1978 7 1397 260 27 27 0 chr1 106561279 106561316 -90634116 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 174 33588 109 40 5 chr1 106561316 106562905 -90632527 - L1Md_F2 LINE L1 -3906 1977 321 7 1398 22 0 0 0 chr1 106563202 106563224 -90632208 + AT_rich Low_complexity Low_complexity 1 22 0 7 1398 458 210 8 0 chr1 106563941 106564065 -90631367 + GA-rich Low_complexity Low_complexity 3 127 0 7 1398 197 283 54 54 chr1 106564164 106564276 -90631156 + L3 LINE CR1 4269 4380 -109 7 1398 201 74 0 0 chr1 106564530 106564557 -90630875 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 8 1398 2969 55 3 3 chr1 106565100 106565480 -90629952 - L1_Mus3 LINE L1 -599 6039 5660 8 1398 4174 85 3 9 chr1 106565480 106566064 -90629368 + L1_Mus3 LINE L1 6046 6626 -12 8 1398 702 0 0 0 chr1 106566067 106566145 -90629287 + (GAA)n Simple_repeat Simple_repeat 2 79 0 8 1398 1041 247 123 16 chr1 106566326 106566495 -90628937 + RMER17C LTR ERVK 1 180 -230 8 1398 885 74 0 0 chr1 106566495 106566630 -90628802 + (TC)n Simple_repeat Simple_repeat 2 136 0 8 1398 369 0 0 0 chr1 106566630 106566670 -90628762 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1398 1041 247 123 16 chr1 106566670 106566865 -90628567 + RMER17C LTR ERVK 181 403 -7 8 1398 303 184 20 0 chr1 106566871 106566920 -90628512 + RMER17C-int LTR ERVK 1 50 -3188 8 1398 4395 216 119 86 chr1 106566915 106568826 -90626606 + RMER17C-int LTR ERVK 7 1979 -1259 8 1398 3486 128 19 17 chr1 106568826 106569400 -90626032 + ORR1A2-int LTR MaLR 1389 1963 0 8 1398 1860 153 6 9 chr1 106569404 106569728 -90625704 + ORR1A2 LTR MaLR 5 327 0 8 1398 923 287 92 17 chr1 106569737 106570081 -90625351 + Lx8 LINE L1 6222 6578 -895 8 1398 5095 158 101 25 chr1 106570230 106570578 -90624854 + RMER17C-int LTR ERVK 2107 2454 -784 8 1398 2957 60 5 0 chr1 106570578 106570963 -90624469 + L1Md_F2 LINE L1 6194 6580 -2 8 1398 5095 158 101 25 chr1 106570963 106571328 -90624104 + RMER17C-int LTR ERVK 2455 2865 -373 8 1398 657 97 0 0 chr1 106571328 106571431 -90624001 + (TG)n Simple_repeat Simple_repeat 2 104 0 8 1398 5095 158 101 25 chr1 106571431 106571768 -90623664 + RMER17C-int LTR ERVK 2866 3236 -2 8 1398 707 252 95 75 chr1 106571768 106572167 -90623265 + RMER17C LTR ERVK 1 407 -3 8 1398 1245 341 23 9 chr1 106572443 106573143 -90622289 + Lx5 LINE L1 17 686 -7042 9 1398 236 270 117 16 chr1 106573135 106573263 -90622169 + Lx5 LINE L1 859 999 -6729 9 1398 639 39 0 0 chr1 106573312 106573390 -90622042 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1398 375 243 29 0 chr1 106573584 106573724 -90621708 + Lx5 LINE L1 869 1012 -6716 9 1398 13639 198 25 46 chr1 106573714 106574452 -90620980 + Lx5 LINE L1 2286 3005 -2875 9 1398 489 97 0 0 chr1 106574452 106574524 -90620908 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 9 1398 13639 198 25 46 chr1 106574524 106575899 -90619533 + Lx5 LINE L1 3006 4298 -1582 9 1398 3034 187 110 9 chr1 106575899 106576553 -90618879 + RMER6D LTR ERVK 1 720 0 9 1398 13639 198 25 46 chr1 106576553 106576933 -90618499 + Lx5 LINE L1 4299 4687 -1193 9 1398 2916 100 0 10 chr1 106576933 106577337 -90618095 - MTB LTR MaLR 0 400 1 9 1398 13639 198 25 46 chr1 106577337 106578229 -90617203 + Lx5 LINE L1 4688 5601 -279 9 1398 1512 208 17 7 chr1 106578233 106578533 -90616899 - ORR1B1 LTR MaLR -8 386 84 9 1398 1650 232 7 44 chr1 106578560 106579016 -90616416 + Lx5 LINE L1 5597 6035 -1015 9 1398 19076 138 25 63 chr1 106579011 106583954 -90611478 + Lx4A LINE L1 2290 7058 0 9 1398 338 340 31 73 chr1 106584311 106584666 -90610766 + L1MC4 LINE L1 2034 2373 -3842 9 1398 1301 141 3 182 chr1 106584887 106585233 -90610199 + L1_Mur2 LINE L1 4590 4873 -1004 9 1398 1519 253 46 5 chr1 106585234 106585607 -90609825 + Lx5 LINE L1 6647 7034 -16 9 1398 841 281 121 32 chr1 106585625 106586155 -90609277 + L1MA4 LINE L1 5352 5928 -372 9 1398 7283 131 122 7 chr1 106586166 106587545 -90607887 - Lx2 LINE L1 0 6997 5467 1 1398 829 326 35 35 chr1 106587751 106588037 -90607395 + B4A SINE B4 7 292 0 1 1398 960 292 21 59 chr1 106588065 106588395 -90607037 + L1M2 LINE L1 4824 5146 -997 1 1398 834 320 84 20 chr1 106588395 106588456 -90606976 + MT2A LTR ERVL 1 66 -467 1 1398 837 115 131 0 chr1 106588456 106588586 -90606846 + B1_Mus1 SINE Alu 2 148 0 1 1398 834 320 84 20 chr1 106588586 106589022 -90606410 + MT2A LTR ERVL 67 529 -4 1 1398 960 292 21 59 chr1 106589022 106589164 -90606268 + L1M2 LINE L1 5147 5278 -865 1 1398 217 139 28 0 chr1 106590049 106590085 -90605347 + CT-rich Low_complexity Low_complexity 2 38 0 1 1398 201 108 0 0 chr1 106590807 106590844 -90604588 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1398 465 158 25 8 chr1 106590907 106591028 -90604404 - Lx9 LINE L1 -1 7643 7521 1 1398 405 0 0 0 chr1 106591083 106591128 -90604304 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1398 269 184 40 0 chr1 106591181 106591277 -90604155 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 1 1398 771 230 0 0 chr1 106592556 106592695 -90602737 + B1_Mur4 SINE Alu 1 139 -11 1 1398 306 0 0 0 chr1 106592695 106592729 -90602703 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1398 841 102 0 23 chr1 106592743 106592873 -90602559 + B2_Mm2 SINE B2 48 174 -21 1 1398 472 290 34 20 chr1 106592873 106593021 -90602411 + MER77 LTR ERVL 452 601 -6 1 1398 290 290 99 10 chr1 106593210 106593311 -90602121 + PB1D7 SINE Alu 11 120 0 1 1398 210 136 0 0 chr1 106593346 106593390 -90602042 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1398 342 200 31 0 chr1 106593560 106593625 -90601807 - RMER15 LTR ERVL 0 575 509 1 1398 1714 206 82 3 chr1 106593625 106594015 -90601417 + MTC LTR MaLR 1 421 0 1 1398 1489 189 109 36 chr1 106594021 106594378 -90601054 - RMER15 LTR ERVL -192 383 1 1 1398 687 278 0 0 chr1 106595108 106595252 -90600180 + ID_B1 SINE B4 79 222 -2 1 1398 782 99 43 0 chr1 106595432 106595594 -90599838 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 1 1398 529 374 37 13 chr1 106596719 106597017 -90598415 + MER77 LTR ERVL 278 582 -25 1 1398 258 176 0 0 chr1 106597100 106597151 -90598281 + GA-rich Low_complexity Low_complexity 1 51 0 1 1398 29 0 0 0 chr1 106597330 106597359 -90598073 + AT_rich Low_complexity Low_complexity 1 29 0 1 1398 1506 159 81 16 chr1 106598529 106598836 -90596596 + ORR1A4 LTR MaLR 1 327 -2 1 1398 8748 156 16 11 chr1 106599267 106601714 -90593718 + Lx2 LINE L1 4541 6997 0 1 1398 572 309 82 11 chr1 106602262 106602445 -90592987 + B3A SINE B2 1 196 -2 1 1398 806 180 37 58 chr1 106602445 106602634 -90592798 + B2_Mm2 SINE B2 1 185 -10 1 1398 522 338 53 29 chr1 106602634 106602657 -90592775 + B3 SINE B2 190 212 -4 1 1398 2612 48 15 6 chr1 106602739 106603072 -90592360 + L1Md_F2 LINE L1 6224 6559 -23 1 1398 294 29 0 0 chr1 106603073 106603108 -90592324 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 1 1398 4300 76 2 11 chr1 106603112 106603685 -90591747 + L1_Mus1 LINE L1 5998 6565 -2 1 1398 758 341 46 42 chr1 106604077 106604487 -90590945 + LTR52 LTR ERVL 10 421 0 1 1398 4549 210 72 70 chr1 106605185 106606880 -90588552 + Lx5 LINE L1 892 2579 -3298 1 1398 3508 61 9 0 chr1 106606890 106607335 -90588097 - L1_Mus2 LINE L1 -514 6052 5604 1 1398 2644 52 31 14 chr1 106607337 106607688 -90587744 + L1_Mus2 LINE L1 6209 6565 -1 1 1398 5779 205 12 157 chr1 106607719 106609851 -90585581 + Lx5 LINE L1 2610 4433 -1447 1 1398 19364 121 8 8 chr1 106609869 106614076 -90581356 - L1_Mus3 LINE L1 -10 6628 2410 1 1398 4177 112 2 8 chr1 106614071 106614543 -90580889 - L1VL1 LINE L1 -2265 1433 964 1 1398 965 134 7 0 chr1 106614543 106614685 -90580747 - B1_Mus1 SINE Alu -5 143 1 1 1398 4177 161 38 79 chr1 106614685 106615496 -90579936 - L1VL1 LINE L1 -5459 963 191 1 1398 5761 185 66 23 chr1 106615495 106616031 -90579401 + Lx5 LINE L1 4428 4995 -882 1 1398 2234 143 14 16 chr1 106616031 106616400 -90579032 - RLTR9A LTR ERVK 0 368 1 1 1398 5761 206 73 18 chr1 106616400 106617684 -90577748 + Lx5 LINE L1 4996 6363 -687 1 1398 1255 292 100 12 chr1 106617689 106618247 -90577185 + Lx5 LINE L1 6486 7460 0 1 1398 416 250 67 26 chr1 106619084 106619277 -90576155 + L1_Rod LINE L1 467 667 -6505 1 1398 538 310 31 41 chr1 106619399 106619816 -90575616 + L1_Rod LINE L1 3645 4057 -1790 1 1398 1832 252 61 57 chr1 106619795 106620762 -90574670 + L1_Rod LINE L1 4240 5210 -637 1 1398 24 0 0 0 chr1 106621063 106621087 -90574345 + AT_rich Low_complexity Low_complexity 1 24 0 1 1398 8648 84 10 7 chr1 106621088 106622362 -90573070 - L1Md_F2 LINE L1 -1 6581 5304 1 1398 1685 38 0 5 chr1 106622362 106622574 -90572858 - L1Md_F3 LINE L1 -2 6582 6372 1 1398 8648 68 0 10 chr1 106622574 106623178 -90572254 - L1Md_F2 LINE L1 -580 5303 4701 1 1398 23 0 0 0 chr1 106623284 106623307 -90572125 + AT_rich Low_complexity Low_complexity 1 23 0 1 1398 907 144 0 12 chr1 106623309 106623478 -90571954 - Lx2A1 LINE L1 0 7008 6842 1 1398 1753 220 27 25 chr1 106623504 106623951 -90571481 + L1_Rod LINE L1 5314 5761 -86 1 1398 3672 145 52 15 chr1 106623945 106624617 -90570815 + Lx3C LINE L1 6196 6892 -84 1 1398 21 0 0 0 chr1 106624623 106624644 -90570788 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 375 23 0 0 chr1 106625090 106625134 -90570298 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1398 259 260 0 0 chr1 106625144 106625240 -90570192 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 1 1398 451 309 29 8 chr1 106625246 106625582 -90569850 + Lx9 LINE L1 7090 7468 -176 1 1398 276 30 0 0 chr1 106625594 106625627 -90569805 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 1 1398 334 181 0 0 chr1 106625627 106625699 -90569733 + (CAGAGA)n Simple_repeat Simple_repeat 1 72 0 1 1398 33 0 0 0 chr1 106625834 106625867 -90569565 + AT_rich Low_complexity Low_complexity 1 33 0 1 1398 636 257 68 28 chr1 106626937 106627113 -90568319 + B3A SINE B2 9 191 -25 1 1398 521 151 23 11 chr1 106627122 106627209 -90568223 - MTC LTR MaLR 0 421 334 1 1398 29 47 0 0 chr1 106627270 106627313 -90568119 + AT_rich Low_complexity Low_complexity 1 43 0 1 1398 556 299 79 52 chr1 106628146 106628516 -90566916 + MLT1A LTR MaLR 2 408 0 1 1398 371 289 128 0 chr1 106629236 106629416 -90566016 + L1M5 LINE L1 5565 5767 -357 1 1398 255 322 46 0 chr1 106631380 106631467 -90563965 + PB1D7 SINE Alu 19 109 -11 1 1398 279 0 0 0 chr1 106632707 106632738 -90562694 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1398 288 306 61 61 chr1 106633175 106633290 -90562142 + B1F2 SINE Alu 1 115 -34 1 1398 2913 54 48 3 chr1 106633299 106633670 -90561762 + RLTR10 LTR ERVK 1 388 -2 1 1398 4130 46 2 0 chr1 106633682 106634559 -90560873 + RLTR10-int LTR ERVK 41 992 -995 1 1398 427 303 94 23 chr1 106634699 106635006 -90560426 + IAP-d-int LTR ERVK 822 1150 -5392 1 1398 7889 39 9 2 chr1 106635088 106636078 -90559354 + RLTR10-int LTR ERVK 990 1986 -1 1 1398 3113 44 8 5 chr1 106636078 106636465 -90558967 + RLTR10 LTR ERVK 1 388 -2 1 1398 2388 167 2 17 chr1 106636467 106636882 -90558550 + Lx4A LINE L1 6649 7057 -1 1 1398 215 175 0 17 chr1 106636970 106637028 -90558404 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1398 45 19 0 0 chr1 106637033 106637085 -90558347 + AT_rich Low_complexity Low_complexity 1 52 0 1 1398 293 315 56 0 chr1 106637091 106637199 -90558233 + PB1D10 SINE Alu 4 117 0 1 1398 219 345 58 29 chr1 106637744 106637917 -90557515 + MIRb SINE MIR 46 223 -45 1 1398 310 362 8 23 chr1 106637917 106638050 -90557382 + L1MB8 LINE L1 5822 5952 -226 1 1398 339 345 38 76 chr1 106638338 106638523 -90556909 - B4 SINE B4 -113 179 2 1 1398 369 0 0 0 chr1 106639218 106639259 -90556173 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1398 689 291 130 0 chr1 106639278 106639525 -90555907 - B4A SINE B4 -13 279 1 1 1398 463 148 281 50 chr1 106639548 106639669 -90555763 - B1_Mur4 SINE Alu -1 149 1 1 1398 226 271 71 0 chr1 106640104 106640174 -90555258 - RLTR13D4 LTR ERVK -718 315 241 1 1398 298 298 9 19 chr1 106640441 106640547 -90554885 + GA-rich Low_complexity Low_complexity 4 108 0 1 1398 392 241 11 0 chr1 106640733 106640820 -90554612 + PB1D10 SINE Alu 22 109 -8 1 1398 480 128 0 0 chr1 106640908 106640986 -90554446 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1398 741 12 0 0 chr1 106641010 106641096 -90554336 + (ATGTG)n Simple_repeat Simple_repeat 1 86 0 1 1398 240 374 12 35 chr1 106641101 106641187 -90554245 - RSINE1 SINE B4 -28 137 54 1 1398 243 103 0 0 chr1 106641243 106641282 -90554150 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1398 402 21 0 0 chr1 106641289 106641336 -90554096 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1398 604 254 132 42 chr1 106641427 106641616 -90553816 - B3A SINE B2 -1 215 10 1 1398 3692 34 0 5 chr1 106642443 106642890 -90552542 - L1Md_F3 LINE L1 -12 6572 6128 1 1398 288 0 0 0 chr1 106643073 106643105 -90552327 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1398 423 0 0 0 chr1 106645225 106645272 -90550160 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1398 362 331 32 32 chr1 106645286 106645411 -90550021 - RSINE1 SINE B4 -34 131 7 1 1398 1433 269 25 3 chr1 106646951 106647274 -90548158 + MTD LTR MaLR 58 387 -32 1 1398 822 254 235 59 chr1 106647274 106647785 -90547647 + MT2B LTR ERVL 1 601 0 1 1398 180 317 35 35 chr1 106649691 106649776 -90545656 - L2c LINE L2 -50 3337 3253 1 1398 384 77 0 0 chr1 106650657 106650709 -90544723 + (TTG)n Simple_repeat Simple_repeat 1 52 0 1 1398 938 311 114 23 chr1 106651046 106651520 -90543912 + MLT1F2 LTR MaLR 38 554 -6 1 1398 284 338 54 30 chr1 106651703 106651871 -90543561 + MIR SINE MIR 20 191 -71 1 1398 597 40 0 0 chr1 106652062 106652138 -90543294 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1398 289 312 73 48 chr1 106654578 106654743 -90540689 - MIR SINE MIR -81 181 13 1 1398 435 78 0 0 chr1 106655777 106655841 -90539591 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1398 309 262 24 0 chr1 106655991 106656075 -90539357 - MLT1D LTR MaLR -9 496 411 1 1398 403 196 55 73 chr1 106656090 106656200 -90539232 - MLT1D LTR MaLR -146 359 252 1 1398 423 0 0 0 chr1 106656376 106656423 -90539009 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1398 944 209 10 0 chr1 106656518 106656714 -90538718 + Lx6 LINE L1 7253 7450 -10 1 1398 22 35 0 0 chr1 106657164 106657193 -90538239 + AT_rich Low_complexity Low_complexity 1 29 0 1 1398 244 239 222 22 chr1 106657271 106657361 -90538071 - B4 SINE B4 -35 257 150 1 1398 273 89 0 0 chr1 106657641 106657686 -90537746 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1398 291 54 0 0 chr1 106657686 106657723 -90537709 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1398 7710 42 0 0 chr1 106658086 106659119 -90536313 - L1Md_T LINE L1 0 6582 5550 2 1398 297 0 0 0 chr1 106659118 106659153 -90536279 + L1_Mm LINE L1 2381 2415 -3468 2 1398 22 0 0 0 chr1 106659384 106659406 -90536026 + AT_rich Low_complexity Low_complexity 1 22 0 2 1398 188 333 80 45 chr1 106659461 106659549 -90535883 + MIRm SINE MIR 157 247 -29 2 1398 441 0 0 0 chr1 106660453 106660502 -90534930 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1398 504 45 0 0 chr1 106660502 106660568 -90534864 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1398 731 50 10 0 chr1 106662216 106662316 -90533116 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2 1398 639 287 36 21 chr1 106662328 106662550 -90532882 - MLT2B4 LTR ERVL -113 301 69 2 1398 351 358 73 59 chr1 106662871 106663212 -90532220 + ORR1D2 LTR MaLR 18 363 -7 2 1398 535 224 0 114 chr1 106664116 106664247 -90531185 - B4 SINE B4 -49 243 128 2 1398 213 252 82 22 chr1 106664271 106664405 -90531027 - BC1_Mm scRNA scRNA -4 148 7 2 1398 833 196 175 0 chr1 106667827 106668016 -90527416 + URR1B DNA MER1_type 1 222 -3 2 1398 450 268 45 0 chr1 106670298 106670410 -90525022 + RSINE1 SINE B4 11 127 -38 2 1398 441 0 0 0 chr1 106670465 106670514 -90524918 + (GTTTG)n Simple_repeat Simple_repeat 1 49 0 2 1398 750 295 93 38 chr1 106670805 106671850 -90523582 - L1MB1 LINE L1 -45 6267 5142 2 1398 229 68 22 22 chr1 106671934 106671979 -90523453 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1398 1052 102 0 0 chr1 106672072 106672219 -90523213 + B1_Mus2 SINE Alu 1 147 0 2 1398 28 0 0 0 chr1 106673078 106673106 -90522326 + AT_rich Low_complexity Low_complexity 1 28 0 2 1398 2920 284 38 21 chr1 106673470 106674491 -90520941 - Lx7 LINE L1 -287 7409 6372 2 1398 692 338 64 8 chr1 106674660 106674999 -90520433 - MLT1A0 LTR MaLR 0 408 2 2 1398 303 299 100 23 chr1 106676011 106676069 -90519363 - MER20 DNA MER1_type -78 141 75 2 1398 6827 77 6 1 chr1 106676069 106676958 -90518474 - RLTR13B1 LTR ERVK 0 893 1 2 1398 303 299 100 23 chr1 106676958 106677029 -90518403 - MER20 DNA MER1_type -145 74 2 2 1398 409 212 0 86 chr1 106677489 106677582 -90517850 - PB1D10 SINE Alu 0 117 33 2 1398 258 352 108 27 chr1 106677528 106677639 -90517793 - ID_B1 SINE B4 -57 167 48 2 1398 258 341 29 17 chr1 106677657 106677743 -90517689 - ID4_ SINE ID -70 82 1 2 1398 318 307 94 68 chr1 106678213 106678340 -90517092 + L3 LINE CR1 4066 4199 -290 2 1398 1197 58 0 0 chr1 106678340 106678494 -90516938 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 2 1398 318 307 94 68 chr1 106678494 106678600 -90516832 + L3 LINE CR1 4200 4305 -184 2 1398 305 342 143 69 chr1 106678961 106679178 -90516254 + B4A SINE B4 2 234 -58 2 1398 783 274 79 43 chr1 106680156 106680345 -90515087 + B4A SINE B4 3 206 -86 2 1398 1713 169 67 148 chr1 106680345 106680852 -90514580 + RMER4A LTR ERVK 1 466 0 2 1398 783 274 79 43 chr1 106680852 106680940 -90514492 + B4A SINE B4 207 290 -2 2 1398 258 32 0 0 chr1 106680997 106681028 -90514404 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1398 1549 230 144 37 chr1 106682943 106683511 -90511921 - Lx8 LINE L1 -5 7468 6840 2 1398 1190 216 111 43 chr1 106683531 106683662 -90511770 + ORR1D1 LTR MaLR 28 183 -191 2 1398 912 121 0 0 chr1 106683662 106683835 -90511597 + (TC)n Simple_repeat Simple_repeat 2 174 0 2 1398 279 0 0 0 chr1 106683835 106683865 -90511567 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1398 1190 216 111 43 chr1 106683865 106684057 -90511375 + ORR1D1 LTR MaLR 184 373 -1 2 1398 510 281 129 5 chr1 106684104 106684290 -90511142 - Lx8 LINE L1 -768 6705 6497 2 1398 7756 25 20 3 chr1 106685503 106686470 -90508962 - L1Md_F3 LINE L1 -15 6569 5587 2 1398 495 0 0 0 chr1 106686624 106686679 -90508753 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1398 297 0 0 0 chr1 106686679 106686711 -90508721 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1398 254 257 42 28 chr1 106686747 106686819 -90508613 - B4 SINE B4 -218 74 2 2 1398 2596 88 18 8 chr1 106687105 106687494 -90507938 + L1_Mus4 LINE L1 6240 6632 -4 2 1398 1884 201 153 73 chr1 106687930 106688439 -90506993 - RLTR20A2 LTR ERVK -1 550 1 2 1398 266 330 11 11 chr1 106688469 106688561 -90506871 - MLT1J1 LTR MaLR -316 128 37 2 1398 465 19 0 0 chr1 106689822 106689876 -90505556 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1398 674 267 218 13 chr1 106691679 106691918 -90503514 - B4A SINE B4 0 292 5 2 174 523 310 98 0 chr1 106692535 106692719 -90502713 + L2 LINE L2 2692 2893 -526 2 1399 294 317 80 16 chr1 106692823 106692948 -90502484 - MLT1J LTR MaLR -35 477 345 2 1399 248 271 0 0 chr1 106693556 106693615 -90501817 + CT-rich Low_complexity Low_complexity 2 60 0 2 1399 236 303 55 39 chr1 106693617 106693666 -90501766 - ID2 SINE ID -18 134 5 2 1399 234 299 38 25 chr1 106693666 106693745 -90501687 - ID SINE ID -140 84 5 2 1399 252 86 0 0 chr1 106696933 106696968 -90498464 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1399 439 258 150 19 chr1 106697066 106697279 -90498153 + MER5C DNA MER1_type 57 297 -16 2 1399 202 269 19 0 chr1 106697779 106697831 -90497601 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1399 187 31 30 30 chr1 106697843 106697876 -90497556 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2 1399 21 71 0 0 chr1 106699023 106699065 -90496367 + AT_rich Low_complexity Low_complexity 1 42 0 2 1399 548 312 47 60 chr1 106700454 106700754 -90494678 - MLT1D LTR MaLR -3 502 207 2 1399 198 321 81 45 chr1 106701046 106701157 -90494275 - MIRb SINE MIR -132 136 22 2 1399 1312 284 83 12 chr1 106701306 106701709 -90493723 + Lx8 LINE L1 6926 7333 -140 2 1399 242 38 37 37 chr1 106701709 106701763 -90493669 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1399 1312 284 83 12 chr1 106701763 106701862 -90493570 + Lx8 LINE L1 7334 7463 -10 2 1399 384 161 16 31 chr1 106702381 106702509 -90492923 + (TG)n Simple_repeat Simple_repeat 1 126 0 2 1399 274 206 0 31 chr1 106702552 106702617 -90492815 - L1MA9 LINE L1 -222 6090 6028 2 1399 529 261 106 0 chr1 106702949 106703091 -90492341 + B4A SINE B4 1 157 -135 2 1399 1400 161 20 4 chr1 106703053 106703297 -90492135 - ORR1B1 LTR MaLR -144 250 3 2 1399 282 137 39 0 chr1 106703299 106703350 -90492082 - ORR1B1-int LTR MaLR 0 1509 1457 2 1399 572 182 33 12 chr1 106703342 106703453 -90491979 - ORR1B1 LTR MaLR -42 352 230 2 1399 1545 176 162 9 chr1 106703453 106703768 -90491664 - ORR1B2 LTR MaLR -4 363 1 2 1399 523 296 93 42 chr1 106703768 106703892 -90491540 - ORR1B1 LTR MaLR -155 229 95 2 1399 213 94 0 0 chr1 106704808 106704840 -90490592 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1399 489 308 62 41 chr1 106705348 106705592 -90489840 + MER58B DNA MER1_type 87 335 -6 2 1399 29 70 0 0 chr1 106706901 106706958 -90488474 + AT_rich Low_complexity Low_complexity 1 57 0 2 1399 735 245 20 50 chr1 106707046 106707248 -90488184 - B3A SINE B2 0 198 3 2 1399 641 196 13 53 chr1 106707666 106707817 -90487615 - B1_Mm SINE Alu -2 145 1 2 1399 591 15 0 0 chr1 106708350 106708418 -90487014 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 2 1399 1105 68 0 45 chr1 106708465 106708619 -90486813 - B1_Mus1 SINE Alu 0 148 2 2 1399 331 73 18 18 chr1 106710176 106710232 -90485200 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1399 719 272 53 37 chr1 106711900 106712144 -90483288 - MLT2B4 LTR ERVL -308 248 1 2 1399 23 0 0 0 chr1 106714152 106714175 -90481257 + AT_rich Low_complexity Low_complexity 1 23 0 2 1399 193 324 82 36 chr1 106715554 106715703 -90479729 + MIRm SINE MIR 23 171 -91 2 1399 273 288 0 70 chr1 106715879 106715965 -90479467 - ID4_ SINE ID -2 81 2 2 1399 386 304 79 7 chr1 106715975 106716114 -90479318 - B1F1 SINE Alu 0 149 1 2 1399 228 333 0 12 chr1 106716052 106716134 -90479298 - B4A SINE B4 -146 146 66 2 1399 958 254 5 14 chr1 106716828 106717040 -90478392 - B3 SINE B2 -6 210 1 2 1399 273 309 50 30 chr1 106717520 106717620 -90477812 + B1F SINE Alu 24 125 -24 2 1399 242 246 72 0 chr1 106718149 106718218 -90477214 + MLT1A0 LTR MaLR 6 79 -329 2 1399 430 314 148 49 chr1 106718284 106718589 -90476843 - MTD LTR MaLR -67 352 18 2 1399 378 0 0 0 chr1 106718722 106718764 -90476668 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1399 331 259 59 0 chr1 106718768 106718853 -90476579 + MLT1A0 LTR MaLR 276 365 0 2 1399 1027 272 68 73 chr1 106719151 106719532 -90475900 + MTEb LTR MaLR 1 379 0 2 1399 231 280 24 85 chr1 106721836 106721918 -90473514 + RMER30 DNA MER1_type 2 78 -124 2 1399 521 258 17 72 chr1 106722001 106722084 -90473348 + ID SINE ID 6 78 -146 2 1399 277 259 42 67 chr1 106722084 106722204 -90473228 + PB1D10 SINE Alu 1 117 0 2 1399 210 261 45 30 chr1 106722372 106722439 -90472993 - MIRc SINE MIR -182 86 19 2 1399 870 252 9 0 chr1 106723057 106723267 -90472165 - B3 SINE B2 0 216 5 2 1399 184 262 61 15 chr1 106723380 106723446 -90471986 + L2a LINE L2 3354 3422 -4 2 1399 243 0 0 0 chr1 106724272 106724299 -90471133 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1399 26 88 0 0 chr1 106725556 106725624 -90469808 + AT_rich Low_complexity Low_complexity 1 68 0 2 1399 42 36 0 0 chr1 106726506 106726562 -90468870 + AT_rich Low_complexity Low_complexity 1 56 0 2 1399 498 257 57 23 chr1 106727409 106727584 -90467848 + MLT1B LTR MaLR 5 185 -205 2 1399 243 344 49 8 chr1 106727983 106728106 -90467326 + MIRb SINE MIR 31 158 -110 2 1399 261 370 42 5 chr1 106728168 106728380 -90467052 + L2 LINE L2 726 945 -2474 2 1399 950 0 9 0 chr1 106728597 106728707 -90466725 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1399 225 180 0 0 chr1 106729448 106729498 -90465934 + Lx8 LINE L1 7424 7473 0 2 1399 258 304 19 29 chr1 106729679 106729784 -90465648 - MamGyp-int LTR Gypsy -4802 260 157 2 1399 243 261 120 0 chr1 106729917 106730009 -90465423 - MamGypLTR2b LTR Gypsy 0 922 820 3 1399 8142 37 1 5 chr1 106730564 106731813 -90463619 - L1Md_F2 LINE L1 0 6582 5342 3 1399 548 196 175 7 chr1 106731895 106732049 -90463383 + MIR SINE MIR 18 197 -65 3 1399 282 0 0 0 chr1 106732052 106732089 -90463343 + RLTRETN_Mm LTR ERVK 1 37 -285 3 1399 2224 16 0 12 chr1 106732089 106732348 -90463084 - ETnERV-int LTR ERVK -3058 256 1 3 1399 1845 131 25 16 chr1 106732348 106732667 -90462765 - RLTRETN_Mm LTR ERVK 0 322 1 3 1399 507 267 42 0 chr1 106733614 106733731 -90461701 + B1F1 SINE Alu 10 131 -18 3 1399 1994 207 34 8 chr1 106733731 106734116 -90461316 + MTD LTR MaLR 1 395 -24 3 1399 186 43 0 0 chr1 106736455 106736478 -90458954 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1399 1146 43 0 7 chr1 106736485 106736627 -90458805 - B1_Mus2 SINE Alu -6 141 1 3 1399 801 123 0 0 chr1 106737405 106737543 -90457889 + (GA)n Simple_repeat Simple_repeat 2 139 0 3 1399 414 348 89 55 chr1 106737563 106737800 -90457632 + B4A SINE B4 37 281 -11 3 1399 303 121 0 0 chr1 106737803 106737861 -90457571 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1399 201 121 0 0 chr1 106737866 106737899 -90457533 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1399 599 184 8 8 chr1 106739016 106739142 -90456290 - Lx2B LINE L1 -306 6694 6569 3 1399 870 263 9 5 chr1 106739244 106739458 -90455974 + B3 SINE B2 2 216 0 3 1399 535 313 21 52 chr1 106739537 106739729 -90455703 + MER5A DNA MER1_type 3 188 -1 3 1399 216 317 85 54 chr1 106740237 106740367 -90455065 - L2a LINE L2 0 3426 3293 3 1399 209 217 0 0 chr1 106740372 106740418 -90455014 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1399 1121 238 205 18 chr1 106740643 106741242 -90454190 - MER67C LTR ERV1 0 711 1 3 1399 227 195 190 25 chr1 106741286 106741365 -90454067 - L2 LINE L2 -528 2891 2800 3 1399 800 280 130 19 chr1 106741369 106741791 -90453641 + L1MC4a LINE L1 7396 7864 -18 3 1399 459 270 123 40 chr1 106741857 106742053 -90453379 + L1MA5 LINE L1 5892 6095 -205 3 1399 423 0 0 0 chr1 106742053 106742100 -90453332 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1399 459 270 123 40 chr1 106742100 106742277 -90453155 + L1MA5 LINE L1 6096 6296 -4 3 1399 2576 320 60 20 chr1 106742352 106743294 -90452138 + Lx8 LINE L1 6211 7190 -283 3 1399 277 381 52 6 chr1 106743326 106743500 -90451932 + Lx8 LINE L1 7155 7336 -137 3 1399 25 90 0 0 chr1 106743678 106743745 -90451687 + AT_rich Low_complexity Low_complexity 1 67 0 3 1399 213 271 17 17 chr1 106744030 106744090 -90451342 + B4A SINE B4 31 90 -202 3 1399 251 284 0 29 chr1 106744087 106744156 -90451276 - B4A SINE B4 -195 97 31 3 1399 52 0 0 0 chr1 106746053 106746105 -90449327 + AT_rich Low_complexity Low_complexity 1 52 0 3 1399 547 230 1 1 chr1 106746105 106746258 -90449174 - L1MB3 LINE L1 -17 6157 6004 3 1399 398 176 138 14 chr1 106746488 106746626 -90448806 - Looper DNA PiggyBac -7 1551 1397 3 1399 280 288 226 4 chr1 106746613 106746847 -90448585 - Looper DNA PiggyBac -598 960 675 3 1399 437 261 13 38 chr1 106746862 106747021 -90448411 - L1M2 LINE L1 -2331 3812 3658 3 1399 1523 219 84 79 chr1 106747586 106747804 -90447628 - MTD LTR MaLR -1 418 201 3 1399 5209 145 42 2 chr1 106747804 106748654 -90446778 - Lx3B LINE L1 -4 6969 6086 3 1399 1523 219 84 79 chr1 106748654 106748851 -90446581 - MTD LTR MaLR -219 200 1 3 1399 346 349 49 24 chr1 106749365 106749612 -90445820 - L3 LINE CR1 -273 4216 3964 3 1399 386 326 69 14 chr1 106749784 106750002 -90445430 - L3 LINE CR1 -576 3913 3684 3 1399 7274 229 83 24 chr1 106750161 106750347 -90445085 - Lx6 LINE L1 0 7460 7267 3 1399 1110 125 0 0 chr1 106750347 106750523 -90444909 + (GAA)n Simple_repeat Simple_repeat 3 178 0 3 1399 15313 191 51 44 chr1 106750523 106752437 -90442995 - Lx6 LINE L1 -194 7266 5301 3 1399 625 108 0 19 chr1 106752437 106752541 -90442891 - B2_Mm2 SINE B2 -4 191 90 3 1399 15313 191 51 44 chr1 106752541 106755307 -90440125 - Lx6 LINE L1 -194 5300 2457 3 1399 1127 124 325 5 chr1 106755307 106755510 -90439922 + RMER13A LTR ERVK 1 268 -592 3 1399 2087 206 2 67 chr1 106755494 106755941 -90439491 + RMER13A LTR ERVK 432 849 -11 3 1399 4517 194 94 35 chr1 106755953 106756377 -90439055 - Lx6 LINE L1 -3419 2461 2058 3 1399 387 0 0 0 chr1 106756377 106756420 -90439012 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1399 4517 225 70 22 chr1 106756420 106758045 -90437387 - Lx6 LINE L1 -3823 2057 307 3 1399 9267 53 3 1 chr1 106759315 106761191 -90434241 - L1Md_F2 LINE L1 -11 6571 4691 3 1399 21 0 0 0 chr1 106761682 106761703 -90433729 + AT_rich Low_complexity Low_complexity 1 21 0 3 1399 23 0 0 0 chr1 106762422 106762445 -90432987 + AT_rich Low_complexity Low_complexity 1 23 0 3 1399 580 301 124 31 chr1 106762649 106762940 -90432492 - MER2 DNA MER2_type -3 342 25 3 1399 386 230 60 26 chr1 106763383 106763499 -90431933 + MIR SINE MIR 130 249 -13 3 1399 193 224 88 15 chr1 106764282 106764350 -90431082 + MIRc SINE MIR 83 155 -113 3 1399 295 351 84 0 chr1 106764435 106764566 -90430866 - MIR SINE MIR -119 143 2 3 1399 360 303 152 0 chr1 106764615 106764760 -90430672 - MER5C1 DNA MER1_type -83 180 14 3 1399 2231 214 36 5 chr1 106765202 106765647 -90429785 + RMER4A LTR ERVK 8 466 0 3 1399 940 105 71 55 chr1 106765932 106766114 -90429318 + B2_Mm2 SINE B2 3 187 -8 3 1399 250 313 0 98 chr1 106766858 106766950 -90428482 + ID4_ SINE ID 1 83 0 3 1399 607 90 0 26 chr1 106767404 106767518 -90427914 - L1Md_F2 LINE L1 0 6582 6472 3 1399 337 241 40 46 chr1 106768001 106768153 -90427279 + CT-rich Low_complexity Low_complexity 3 153 0 3 1399 1159 299 101 19 chr1 106768330 106768917 -90426515 - L1MC3 LINE L1 -508 7277 6643 3 1399 251 330 31 10 chr1 106769736 106769834 -90425598 + MIRb SINE MIR 66 165 -103 3 1399 23 0 0 0 chr1 106770025 106770048 -90425384 + AT_rich Low_complexity Low_complexity 1 23 0 3 1399 348 200 93 19 chr1 106770815 106770922 -90424510 + PB1D9 SINE Alu 1 115 -5 3 1399 501 17 0 0 chr1 106770927 106770985 -90424447 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 3 1399 866 309 86 50 chr1 106771718 106772239 -90423193 - L1MB8 LINE L1 -103 6075 5536 3 1399 235 234 125 0 chr1 106772649 106772713 -90422719 - RMER30 DNA MER1_type -8 194 123 3 1399 367 270 44 133 chr1 106772796 106773058 -90422374 + MTEb LTR MaLR 101 372 -7 3 1399 433 280 145 16 chr1 106773062 106773313 -90422119 + MER2 DNA MER2_type 31 314 -31 3 1399 248 111 19 0 chr1 106774426 106774480 -90420952 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1399 505 336 7 0 chr1 106775265 106775414 -90420018 + RSINE1 SINE B4 2 151 -14 3 1399 448 297 7 26 chr1 106776027 106776179 -90419253 + B1F SINE Alu 1 149 0 3 1399 3042 77 12 5 chr1 106776271 106776678 -90418754 - Lx3_Mus LINE L1 -153 6856 6447 3 1399 523 292 157 21 chr1 106776663 106776883 -90418549 - Lx8 LINE L1 -732 6741 6493 3 1399 230 0 0 32 chr1 106776922 106776953 -90418479 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1399 367 250 53 0 chr1 106777532 106777608 -90417824 - 5S rRNA rRNA -37 84 5 3 1399 5774 125 41 33 chr1 106778499 106779449 -90415983 - RMER17B LTR ERVK 0 958 1 3 1399 323 373 78 75 chr1 106779661 106779980 -90415452 - MER102b DNA MER1_type -15 326 7 3 1399 501 368 62 0 chr1 106779994 106780187 -90415245 - Charlie10a DNA MER1_type 0 280 76 3 1399 347 271 55 27 chr1 106780836 106780946 -90414486 + B4 SINE B4 8 120 -172 3 1399 1173 160 14 36 chr1 106780950 106781171 -90414261 - ORR1A4 LTR MaLR 0 329 114 3 1399 241 281 35 58 chr1 106781611 106781698 -90413734 - MLT1G3 LTR MaLR -275 320 236 3 1399 746 200 0 8 chr1 106781897 106782028 -90413404 + B1_Mur3 SINE Alu 19 148 -1 3 1399 6001 26 1 0 chr1 106782821 106783517 -90411915 - L1Md_T LINE L1 0 6582 5886 3 1399 3872 22 0 0 chr1 106783517 106783981 -90411451 + L1Md_T LINE L1 5393 5856 -27 3 1399 40 59 0 0 chr1 106785497 106785565 -90409867 + AT_rich Low_complexity Low_complexity 1 68 0 3 1399 2232 275 130 31 chr1 106785565 106786644 -90408788 - Lx8 LINE L1 -28 7445 6261 3 1399 591 328 66 11 chr1 106786667 106786938 -90408494 + MER63D DNA AcHobo 109 394 -667 3 1399 271 308 43 80 chr1 106787073 106787260 -90408172 + MER63D DNA AcHobo 862 1041 -20 3 1399 521 280 156 0 chr1 106787549 106787716 -90407716 + B3 SINE B2 16 208 -8 3 1399 642 241 69 75 chr1 106787716 106787904 -90407528 - B3 SINE B2 -29 187 1 3 1399 987 293 86 45 chr1 106788847 106789487 -90405945 - L1MD1 LINE L1 -5 6237 5572 3 1399 275 347 96 105 chr1 106789516 106789848 -90405584 + ORR1E LTR MaLR 27 355 -4 3 1399 3945 160 39 23 chr1 106789914 106790606 -90404826 + RLTR25B LTR ERVK 1 703 -325 3 1399 1057 46 0 0 chr1 106790606 106790737 -90404695 - L1_Mus1 LINE L1 -850 5717 5587 3 1399 1267 79 11 0 chr1 106790736 106790913 -90404519 + L1_Mus1 LINE L1 6255 6433 -134 3 1399 8857 55 10 6 chr1 106790949 106792817 -90402615 - L1Md_F2 LINE L1 0 6582 4708 3 1399 861 60 0 113 chr1 106792817 106792968 -90402464 + L1_Mus1 LINE L1 6428 6561 -6 3 1399 526 185 132 54 chr1 106792973 106793139 -90402293 + RLTR25B LTR ERVK 686 864 -164 3 1399 241 163 39 39 chr1 106793134 106793185 -90402247 + U7 snRNA snRNA 7 57 -6 3 1399 705 213 143 71 chr1 106793487 106793697 -90401735 + RLTR25B LTR ERVK 742 966 -62 3 1399 180 0 0 0 chr1 106793697 106793717 -90401715 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1399 705 213 143 71 chr1 106793717 106793744 -90401688 + RLTR25B LTR ERVK 967 995 -33 3 1399 379 183 61 70 chr1 106793827 106794034 -90401398 - L1MD1 LINE L1 -768 5378 5184 3 1399 489 342 44 6 chr1 106794126 106794285 -90401147 + RSINE1 SINE B4 1 165 0 3 1399 352 292 146 24 chr1 106795094 106795259 -90400173 + L1MC3 LINE L1 7447 7631 -154 3 1399 373 255 157 0 chr1 106795579 106795681 -90399751 + B1_Mur2 SINE Alu 2 119 -30 3 1399 333 0 0 0 chr1 106795693 106795730 -90399702 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1399 22 35 0 0 chr1 106795751 106795780 -90399652 + AT_rich Low_complexity Low_complexity 1 29 0 3 1399 398 325 191 17 chr1 106796126 106796367 -90399065 - B4A SINE B4 -8 284 2 3 1399 273 317 19 29 chr1 106796579 106796683 -90398749 + RMER5 LTR ERV1 100 202 -332 3 1399 240 317 85 0 chr1 106796696 106796778 -90398654 + MLT1A LTR MaLR 246 334 -40 3 1399 312 27 0 0 chr1 106796878 106796915 -90398517 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1399 189 0 0 0 chr1 106797114 106797135 -90398297 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1399 307 335 96 0 chr1 106797213 106797363 -90398069 - MLT1A0 LTR MaLR -14 360 185 4 1399 460 255 26 52 chr1 106797416 106797532 -90397900 - PB1D7 SINE Alu -7 113 1 4 1399 338 349 75 8 chr1 106797543 106797676 -90397756 - MLT1A0 LTR MaLR -220 145 4 4 1399 2209 186 40 25 chr1 106797828 106798347 -90397085 + RLTR11A2 LTR ERVK 1 527 0 4 1399 327 78 0 0 chr1 106799961 106800012 -90395420 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1399 638 299 34 49 chr1 106800117 106800384 -90395048 - ORR1E LTR MaLR 0 359 97 4 1399 343 237 48 48 chr1 106800596 106800720 -90394712 + MER5A1 DNA MER1_type 39 162 -4 4 1399 913 309 99 46 chr1 106801531 106801966 -90393466 - MER21B LTR ERV1 -126 737 280 4 1399 254 236 10 92 chr1 106802257 106802278 -90393154 + MT2B2 LTR ERVL 155 241 -340 4 1399 327 216 40 0 chr1 106802278 106802352 -90393080 + PB1D10 SINE Alu 7 83 -34 4 1399 355 224 0 29 chr1 106803270 106803339 -90392093 + ID4 SINE ID 8 74 -9 4 1399 748 243 68 40 chr1 106803379 106803555 -90391877 + B3A SINE B2 17 197 -1 4 1399 21 0 0 0 chr1 106803558 106803579 -90391853 + AT_rich Low_complexity Low_complexity 1 21 0 4 1399 266 316 0 0 chr1 106803742 106803821 -90391611 + MIR SINE MIR 183 261 -1 4 1399 22 0 0 0 chr1 106804196 106804218 -90391214 + AT_rich Low_complexity Low_complexity 1 22 0 4 1399 608 345 28 21 chr1 106804771 106805055 -90390377 - B4A SINE B4 -5 287 2 4 1399 616 322 13 7 chr1 106805355 106805508 -90389924 - B4A SINE B4 -136 156 3 4 1399 252 0 0 0 chr1 106805650 106805678 -90389754 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1399 458 61 15 0 chr1 106805957 106806023 -90389409 + (CATA)n Simple_repeat Simple_repeat 4 70 0 4 1399 269 232 42 28 chr1 106807758 106807829 -90387603 - MIR SINE MIR -111 151 80 4 1399 332 22 0 22 chr1 106808172 106808218 -90387214 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1399 478 239 77 0 chr1 106809557 106809687 -90385745 + B4A SINE B4 141 280 -12 4 1399 213 246 0 34 chr1 106810133 106810192 -90385240 - L2b LINE L2 -22 3353 3297 4 1399 564 15 0 0 chr1 106810519 106810584 -90384848 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1399 2718 60 3 6 chr1 106810890 106811241 -90384191 - L1_Mus2 LINE L1 0 6566 6217 4 1399 678 161 17 23 chr1 106811371 106811543 -90383889 + CT-rich Low_complexity Low_complexity 4 174 0 4 1399 3558 126 39 10 chr1 106811544 106812130 -90383302 - Lx3A LINE L1 -2 6979 6377 4 1399 2338 92 3 0 chr1 106812131 106812469 -90382963 - L1_Mur1 LINE L1 -9 5877 5539 4 1399 261 118 0 0 chr1 106814945 106814996 -90380436 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1399 183 200 0 0 chr1 106815784 106815814 -90379618 - L2c LINE L2 -82 3305 3276 4 1399 383 261 0 0 chr1 106816237 106816306 -90379126 + RSINE1 SINE B4 1 69 -96 4 1399 420 55 0 0 chr1 106816332 106816387 -90379045 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1399 387 0 0 0 chr1 106816387 106816430 -90379002 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1399 237 65 0 0 chr1 106816656 106816687 -90378745 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1399 677 279 128 12 chr1 106816750 106817090 -90378342 - MTEb LTR MaLR 0 379 1 4 1399 848 257 147 50 chr1 106817771 106818132 -90377300 - MTD LTR MaLR -15 404 9 4 1399 187 105 98 73 chr1 106818303 106818344 -90377088 + L3 LINE CR1 949 990 -3499 4 1399 300 335 164 33 chr1 106818430 106818856 -90376576 - L1M5 LINE L1 -339 5785 5304 4 1399 246 32 0 0 chr1 106819113 106819144 -90376288 + (TTG)n Simple_repeat Simple_repeat 1 31 0 4 1399 180 0 0 0 chr1 106819144 106819164 -90376268 + (ATG)n Simple_repeat Simple_repeat 2 21 0 4 1399 641 279 17 64 chr1 106819459 106819631 -90375801 + RSINE1 SINE B4 2 165 0 4 1399 247 358 54 81 chr1 106819460 106819682 -90375750 + B3 SINE B2 1 216 0 4 1399 280 194 125 0 chr1 106820244 106820316 -90375116 + ID2 SINE ID 3 83 0 4 1399 24 0 0 0 chr1 106820632 106820656 -90374776 + AT_rich Low_complexity Low_complexity 1 24 0 4 1399 24 0 0 0 chr1 106820915 106820939 -90374493 + AT_rich Low_complexity Low_complexity 1 24 0 4 1399 216 0 0 0 chr1 106820945 106820969 -90374463 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1399 333 0 0 0 chr1 106820969 106821005 -90374427 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1399 402 321 27 82 chr1 106821014 106821160 -90374272 - RSINE1 SINE B4 -3 162 25 4 1399 459 123 0 0 chr1 106821991 106822072 -90373360 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1399 870 286 58 8 chr1 106822081 106822321 -90373111 - B4A SINE B4 -20 272 21 4 1399 249 281 75 37 chr1 106823209 106823316 -90372116 + PB1D7 SINE Alu 9 119 -1 4 1399 665 300 91 36 chr1 106823386 106823638 -90371794 + MTD LTR MaLR 5 270 -149 4 1400 328 236 159 9 chr1 106823691 106823798 -90371634 + MTD LTR MaLR 266 388 -31 4 1400 426 198 11 32 chr1 106823923 106824017 -90371415 - B1F SINE Alu -54 95 4 4 1400 306 73 0 0 chr1 106824626 106824667 -90370765 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1400 1780 232 19 26 chr1 106825247 106825676 -90369756 + Lx6 LINE L1 7025 7450 -10 4 1400 476 158 11 0 chr1 106826332 106826427 -90369005 + GA-rich Low_complexity Low_complexity 2 97 0 4 1400 1472 226 70 46 chr1 106826427 106826858 -90368574 - RMER10A LTR ERVL -1 441 1 4 1400 316 222 100 137 chr1 106827182 106827346 -90368086 - RLTR19-int LTR ERVK -2125 4012 3879 4 1400 296 301 32 11 chr1 106829072 106829166 -90366266 - MIRc SINE MIR -49 219 124 4 1400 24 32 0 0 chr1 106830383 106830414 -90365018 + AT_rich Low_complexity Low_complexity 1 31 0 4 1400 261 0 0 0 chr1 106831251 106831280 -90364152 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1400 2103 196 71 58 chr1 106832917 106833438 -90361994 + RLTR12B LTR ERVK 1 528 0 4 1400 729 260 222 14 chr1 106834620 106834967 -90360465 - MTD LTR MaLR 0 419 1 4 1400 221 353 42 51 chr1 106836114 106836329 -90359103 - MIRb SINE MIR -13 255 43 4 1400 1084 207 14 5 chr1 106836617 106836831 -90358601 + B3 SINE B2 1 216 0 4 1400 786 194 7 7 chr1 106837070 106837210 -90358222 - B1_Mus1 SINE Alu 0 148 9 4 1400 253 62 42 0 chr1 106837262 106837310 -90358122 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 4 1400 372 59 0 0 chr1 106838143 106838194 -90357238 + (ATTAG)n Simple_repeat Simple_repeat 3 53 0 4 1400 1114 66 0 0 chr1 106838275 106838412 -90357020 + B1_Mus2 SINE Alu 1 137 -10 4 1400 495 0 0 0 chr1 106838412 106838467 -90356965 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 4 1400 180 305 11 68 chr1 106839138 106839226 -90356206 - MIR3 SINE MIR -6 202 120 4 1400 1741 253 70 2 chr1 106840462 106840536 -90354896 - Lx5 LINE L1 0 7050 6967 4 1400 869 19 9 0 chr1 106840536 106840643 -90354789 + (TCTCC)n Simple_repeat Simple_repeat 4 111 0 4 1400 1741 253 70 2 chr1 106840643 106841039 -90354393 - Lx5 LINE L1 -84 6966 6549 4 1400 315 0 0 0 chr1 106841131 106841166 -90354266 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1400 273 119 0 0 chr1 106842090 106842132 -90353300 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 4 1400 287 318 65 0 chr1 106842156 106842263 -90353169 - MER106B DNA MER1_type -905 154 41 4 1400 208 200 15 15 chr1 106842868 106842934 -90352498 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1400 248 154 19 0 chr1 106842961 106843013 -90352419 + GA-rich Low_complexity Low_complexity 2 54 0 4 1400 275 72 261 0 chr1 106843023 106843092 -90352340 - L1_Mus2 LINE L1 -1 6581 6494 4 1400 30 0 0 0 chr1 106844397 106844427 -90351005 + AT_rich Low_complexity Low_complexity 1 30 0 4 1400 26 50 0 0 chr1 106844483 106844523 -90350909 + AT_rich Low_complexity Low_complexity 1 40 0 4 1400 21 36 0 0 chr1 106844645 106844673 -90350759 + AT_rich Low_complexity Low_complexity 1 28 0 4 1400 435 92 0 0 chr1 106844833 106844898 -90350534 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1400 579 304 44 0 chr1 106844928 106845086 -90350346 - B4A SINE B4 -126 166 2 4 1400 7188 120 110 2 chr1 106845195 106846902 -90348530 + Lx LINE L1 4687 6651 -3 4 1400 274 330 75 0 chr1 106846935 106847029 -90348403 + B4A SINE B4 192 292 0 4 1400 26 30 0 0 chr1 106848038 106848071 -90347361 + AT_rich Low_complexity Low_complexity 1 33 0 4 1400 203 368 0 0 chr1 106848505 106848573 -90346859 - L3 LINE CR1 -1191 3298 3231 4 1400 230 228 35 0 chr1 106848930 106848987 -90346445 - Kanga1 DNA Tc2 -1390 355 297 4 1400 394 247 0 0 chr1 106849406 106849483 -90345949 - B3A SINE B2 -121 77 1 4 1400 292 303 78 47 chr1 106850963 106851091 -90344341 - MER20 DNA MER1_type -57 162 31 4 1400 1271 310 74 34 chr1 106851094 106852079 -90343353 - L1_Mur3 LINE L1 -200 5680 4656 4 1400 360 119 0 0 chr1 106852272 106852331 -90343101 + (TTGG)n Simple_repeat Simple_repeat 1 59 0 4 1400 248 237 17 0 chr1 106852362 106852421 -90343011 - RMER15 LTR ERVL -113 462 403 4 1400 918 315 62 0 chr1 106852421 106852789 -90342643 - Lx8 LINE L1 -207 7266 6876 4 1400 903 236 76 12 chr1 106852834 106853164 -90342268 - L1_Mur3 LINE L1 -1250 4630 4280 4 1400 390 245 153 0 chr1 106853288 106853386 -90342046 + B1F2 SINE Alu 22 134 -15 4 1400 180 0 0 0 chr1 106854592 106854612 -90340820 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1400 431 273 24 24 chr1 106855262 106855386 -90340046 + B3A SINE B2 1 124 -74 4 1400 33 94 0 0 chr1 106855471 106855567 -90339865 + AT_rich Low_complexity Low_complexity 1 96 0 4 1400 222 37 0 0 chr1 106855836 106855863 -90339569 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 4 1400 573 15 0 0 chr1 106855863 106855928 -90339504 + (GGAGA)n Simple_repeat Simple_repeat 5 70 0 5 1400 739 199 23 0 chr1 106855928 106856104 -90339328 + GA-rich Low_complexity Low_complexity 1 180 0 5 1400 414 347 101 18 chr1 106857022 106857239 -90338193 + MIR SINE MIR 14 248 -14 5 1400 311 291 138 35 chr1 106857432 106857635 -90337797 - MER112 DNA MER1_type -37 224 1 5 1400 476 259 5 60 chr1 106857676 106857846 -90337586 + B3A SINE B2 49 216 0 5 1400 1260 259 104 87 chr1 106858055 106858651 -90336781 - RLTR18 LTR ERVK -10 606 1 5 1400 314 250 66 33 chr1 106858651 106858742 -90336690 - L1M2 LINE L1 -1306 4840 4747 5 1400 668 249 91 0 chr1 106858953 106859162 -90336270 + L1M1 LINE L1 5539 5766 -534 5 1400 39504 8 0 1 chr1 106859192 106866184 -90329248 - L1Md_A LINE L1 0 6582 1 5 1400 847 203 34 5 chr1 106866200 106866448 -90328984 + L1MA8 LINE L1 5775 6019 -281 5 1400 460 346 72 54 chr1 106866481 106866942 -90328490 - LTR80A LTR ERVL -6 577 109 5 1400 258 56 0 0 chr1 106867882 106867918 -90327514 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 5 1400 544 286 146 38 chr1 106867928 106868433 -90326999 - L1M2 LINE L1 -3153 2993 2440 5 1400 600 230 28 21 chr1 106868433 106868575 -90326857 - B1_Mur1 SINE Alu -6 143 1 5 1400 544 306 111 38 chr1 106868575 106868784 -90326648 - L1M2 LINE L1 -3704 2439 2203 5 1400 5399 80 1 30 chr1 106869009 106869765 -90325667 + L1_Mus2 LINE L1 5832 6565 -1 5 1400 1381 74 21 0 chr1 106870193 106870383 -90325049 + B2_Mm2 SINE B2 1 194 -1 5 1400 412 277 81 32 chr1 106870493 106870616 -90324816 + RSINE1 SINE B4 4 132 -33 5 1400 210 286 21 57 chr1 106870707 106870848 -90324584 + A-rich Low_complexity Low_complexity 2 137 0 5 1400 1000 223 19 23 chr1 106870850 106871066 -90324366 + B3 SINE B2 2 216 0 5 1400 249 304 95 32 chr1 106871139 106871234 -90324198 + RSINE1 SINE B4 4 104 -61 5 1400 1609 247 68 13 chr1 106871745 106872142 -90323290 - MTD LTR MaLR 0 419 1 5 1400 245 42 21 0 chr1 106872244 106872292 -90323140 - L1Md_F2 LINE L1 0 6582 6534 5 1400 636 38 0 0 chr1 106873705 106873784 -90321648 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1400 276 30 0 0 chr1 106873784 106873816 -90321616 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1400 322 339 23 30 chr1 106874437 106874568 -90320864 - LTR16A LTR ERVL -214 237 108 5 1400 202 260 20 0 chr1 106875884 106875934 -90319498 - MIR SINE MIR -5 257 207 5 1400 1031 106 0 16 chr1 106876158 106876341 -90319091 + (CAG)n Simple_repeat Simple_repeat 1 180 0 5 1400 295 232 129 14 chr1 106876357 106876427 -90319005 - B3A SINE B2 -120 78 1 5 1400 620 333 45 20 chr1 106876429 106876674 -90318758 - B4A SINE B4 -40 252 2 5 1400 311 186 0 54 chr1 106877163 106877237 -90318195 - ID4 SINE ID -13 70 1 5 1400 376 279 65 115 chr1 106877243 106877315 -90318117 - B4 SINE B4 -49 243 155 5 1400 186 71 0 0 chr1 106877315 106877343 -90318089 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1400 376 259 16 136 chr1 106877343 106877428 -90318004 - B4 SINE B4 -138 154 81 5 1400 402 21 0 0 chr1 106877517 106877564 -90317868 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1400 270 136 0 0 chr1 106877713 106877757 -90317675 + (TTG)n Simple_repeat Simple_repeat 1 44 0 5 1400 23 0 0 0 chr1 106877855 106877878 -90317554 + AT_rich Low_complexity Low_complexity 1 23 0 5 1400 244 158 0 0 chr1 106878062 106878100 -90317332 - MTD LTR MaLR -8 411 374 5 1400 681 260 71 14 chr1 106878128 106878344 -90317088 - MTD LTR MaLR -182 225 1 5 1400 316 346 85 37 chr1 106878375 106878564 -90316868 + MIRb SINE MIR 11 208 -60 5 1400 198 0 0 0 chr1 106878592 106878614 -90316818 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 1400 287 24 71 0 chr1 106878636 106878678 -90316754 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 1400 204 40 0 0 chr1 106878768 106878793 -90316639 + (C)n Simple_repeat Simple_repeat 1 25 0 5 1400 243 371 16 79 chr1 106878865 106878991 -90316441 - MLT1I LTR MaLR -275 136 19 5 1400 458 175 217 0 chr1 106879123 106879243 -90316189 - B1F1 SINE Alu -3 146 1 5 1400 936 191 0 0 chr1 106879420 106879670 -90315762 + (TA)n Simple_repeat Simple_repeat 1 250 0 5 1400 232 260 0 14 chr1 106879801 106879875 -90315557 + L1MA5 LINE L1 6123 6195 -105 5 1400 887 257 28 53 chr1 106879875 106880158 -90315274 + B4A SINE B4 3 278 -14 5 1400 180 0 0 0 chr1 106880260 106880280 -90315152 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1400 949 217 29 19 chr1 106880375 106880582 -90314850 + B3 SINE B2 3 211 -5 5 1400 482 258 8 70 chr1 106882512 106882641 -90312791 + B1F SINE Alu 23 143 -6 5 1400 345 24 0 0 chr1 106883216 106883258 -90312174 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1400 952 155 93 68 chr1 106883762 106884073 -90311359 - Lx7 LINE L1 -1 7695 7377 5 1400 249 83 0 0 chr1 106884091 106884127 -90311305 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 5 1400 3472 244 32 14 chr1 106884188 106884452 -90310980 - Lx7 LINE L1 -337 7359 7098 5 1400 486 0 0 0 chr1 106884452 106884506 -90310926 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 5 1400 3472 244 32 14 chr1 106884506 106885142 -90310290 - Lx7 LINE L1 -599 7097 6444 5 1400 6140 176 43 21 chr1 106885141 106885528 -90309904 - L1_Mur3 LINE L1 -1285 4595 4207 5 1400 270 0 0 0 chr1 106885528 106885558 -90309874 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1400 6140 176 43 21 chr1 106885558 106886353 -90309079 - L1_Mur3 LINE L1 -1674 4206 3365 5 1400 1043 123 0 0 chr1 106886353 106886499 -90308933 + B1_Mus2 SINE Alu 2 147 0 5 1400 6140 176 43 21 chr1 106886499 106886675 -90308757 - L1_Mur3 LINE L1 -2516 3364 3207 5 1400 396 132 0 14 chr1 106886675 106886744 -90308688 - B2_Mm2 SINE B2 -126 69 2 5 1400 4894 176 73 15 chr1 106886746 106887281 -90308151 - L1_Mur3 LINE L1 -4227 1653 1090 5 1400 417 39 0 0 chr1 106887281 106887332 -90308100 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1400 4894 183 124 19 chr1 106887332 106888252 -90307180 - L1_Mur3 LINE L1 -6639 1089 57 5 1400 318 297 12 65 chr1 106888262 106888383 -90307049 - PB1 SINE Alu -7 120 3 5 1400 333 185 0 0 chr1 106889049 106889114 -90306318 + CT-rich Low_complexity Low_complexity 2 66 0 5 1400 218 186 0 0 chr1 106889117 106889160 -90306272 + (CCA)n Simple_repeat Simple_repeat 2 44 0 5 1400 309 109 0 0 chr1 106889617 106889663 -90305769 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1400 189 0 0 0 chr1 106889731 106889752 -90305680 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1400 423 307 99 7 chr1 106889753 106889904 -90305528 - Lx8 LINE L1 -155 7318 7154 5 1400 432 0 0 0 chr1 106891411 106891459 -90303973 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1400 198 0 79 26 chr1 106892091 106892129 -90303303 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1400 7490 62 9 7 chr1 106892206 106893157 -90302275 - L1_Mus1 LINE L1 -1 6566 5614 5 1400 25 31 0 0 chr1 106893516 106893548 -90301884 + AT_rich Low_complexity Low_complexity 1 32 0 5 1400 556 256 139 6 chr1 106893678 106893843 -90301589 - MER5A DNA MER1_type 0 189 3 5 1400 865 157 12 0 chr1 106893880 106894052 -90301380 + CT-rich Low_complexity Low_complexity 2 175 0 5 1400 376 254 87 9 chr1 106895527 106895642 -90299790 + B4A SINE B4 155 278 -14 5 1400 235 194 27 40 chr1 106895661 106895736 -90299696 + (CAGAGA)n Simple_repeat Simple_repeat 4 77 0 5 1400 354 364 39 25 chr1 106896207 106896410 -90299022 - MLT1G3 LTR MaLR -37 558 353 5 1400 2338 136 113 13 chr1 106896808 106897188 -90298244 + MTC LTR MaLR 2 419 -2 5 1400 1052 310 98 30 chr1 106897202 106898083 -90297349 - L1ME1 LINE L1 -15 6164 5227 5 1400 291 321 18 27 chr1 106898084 106898196 -90297236 + GA-rich Low_complexity Low_complexity 5 115 0 5 1400 486 316 79 29 chr1 106898398 106898639 -90296793 + MLT1C LTR MaLR 179 431 -36 5 1400 324 120 0 0 chr1 106899655 106899705 -90295727 + (ATG)n Simple_repeat Simple_repeat 2 51 0 5 1400 1333 236 67 32 chr1 106900021 106900393 -90295039 + MTD LTR MaLR 35 419 0 5 1400 4615 76 88 0 chr1 106901339 106901945 -90293487 - Lx3_Mus LINE L1 -1 7008 6350 5 1400 1975 236 58 10 chr1 106902119 106902620 -90292812 + RLTR11A2 LTR ERVK 1 525 -2 5 1400 493 299 78 23 chr1 106902982 106903133 -90292299 + MLT1A LTR MaLR 144 303 -71 5 1400 423 0 0 0 chr1 106903133 106903180 -90292252 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 5 1400 493 299 78 23 chr1 106903180 106903247 -90292185 + MLT1A LTR MaLR 304 374 0 5 1400 554 140 10 20 chr1 106903354 106903456 -90291976 + MT2C_Mm LTR ERVL 297 397 -78 5 1400 13337 85 65 20 chr1 106903462 106906148 -90289284 + L1VL4 LINE L1 201 3009 -550 5 1400 439 301 109 8 chr1 106906177 106906413 -90289019 - L1M3 LINE L1 -398 5782 5518 5 1400 287 344 0 0 chr1 106906569 106906662 -90288770 + MLT1I LTR MaLR 319 411 0 5 1400 643 204 128 8 chr1 106907786 106907919 -90287513 + B1_Mur2 SINE Alu 1 149 0 5 1400 228 262 132 28 chr1 106908513 106908619 -90286813 + L3 LINE CR1 2367 2483 -2006 5 1400 377 282 78 27 chr1 106908657 106908834 -90286598 - MIRc SINE MIR -43 225 45 5 1400 1960 153 41 51 chr1 106909676 106910090 -90285342 - RMER17C LTR ERVK 0 410 1 5 1400 38866 31 1 1 chr1 106910224 106917603 -90277829 - L1Md_T LINE L1 0 6585 1 5 1400 36875 73 1 14 chr1 106917602 106923959 -90271473 - L1Md_F2 LINE L1 -31 6551 284 5 1400 288 0 0 0 chr1 106924391 106924423 -90271009 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1400 21 0 0 0 chr1 106924755 106924776 -90270656 + AT_rich Low_complexity Low_complexity 1 21 0 5 1400 243 217 42 42 chr1 106924908 106924980 -90270452 + GA-rich Low_complexity Low_complexity 5 76 0 5 1400 231 61 0 0 chr1 106926512 106926545 -90268887 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1400 3936 58 0 0 chr1 106927282 106927766 -90267666 + L1Md_F3 LINE L1 5102 5585 -298 5 1400 8955 31 2 5 chr1 106927767 106928768 -90266664 + L1Md_F3 LINE L1 5587 6584 0 5 1400 231 246 57 14 chr1 106928988 106929058 -90266374 - RMER10B LTR ERVL -291 107 35 5 1400 592 115 19 0 chr1 106929227 106929331 -90266101 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 5 1400 212 263 69 17 chr1 106929362 106929420 -90266012 + ID4_ SINE ID 9 69 -14 5 1400 432 0 0 0 chr1 106929424 106929472 -90265960 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1400 815 316 100 14 chr1 106929479 106929838 -90265594 + MLT2C1 LTR ERVL 8 397 0 6 1400 196 132 0 70 chr1 106930129 106930186 -90265246 + CT-rich Low_complexity Low_complexity 2 54 0 6 1400 401 275 18 27 chr1 106930665 106930777 -90264655 - PB1 SINE Alu -14 113 3 6 1400 305 335 56 31 chr1 106930864 106931024 -90264408 + L1M LINE L1 5256 5419 -2463 6 1400 415 321 81 103 chr1 106931024 106931401 -90264031 + ORR1E LTR MaLR 1 366 -4 6 1400 756 281 139 43 chr1 106931615 106931961 -90263471 - MTEa LTR MaLR 0 379 1 6 1400 441 286 151 15 chr1 106932174 106932373 -90263059 - MLT1A0 LTR MaLR -35 330 105 6 1400 272 330 135 42 chr1 106933688 106933881 -90261551 - L2a LINE L2 -226 3200 2990 6 1400 1397 49 0 13 chr1 106934214 106934442 -90260990 + (GGAGA)n Simple_repeat Simple_repeat 1 225 0 6 1400 351 266 17 58 chr1 106935500 106935620 -90259812 + PB1D7 SINE Alu 5 119 -1 6 1400 553 253 81 20 chr1 106935631 106935780 -90259652 + RSINE1 SINE B4 8 165 0 6 1400 452 132 12 0 chr1 106936036 106936119 -90259313 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1400 21 0 0 0 chr1 106937506 106937527 -90257905 + AT_rich Low_complexity Low_complexity 1 21 0 6 1400 420 215 62 45 chr1 106937904 106938016 -90257416 + MLT1B LTR MaLR 8 121 -269 6 1400 1132 228 117 15 chr1 106938020 106938362 -90257070 + MTEb LTR MaLR 3 379 0 6 1400 262 360 50 10 chr1 106938367 106938468 -90256964 - MLT1J1 LTR MaLR -190 315 211 6 1400 1042 268 90 22 chr1 106938868 106939223 -90256209 - MTEa LTR MaLR 0 379 1 6 1400 418 337 18 35 chr1 106939242 106939411 -90256021 - MLT1J1 LTR MaLR -276 168 3 6 1400 36493 26 0 0 chr1 106939614 106944531 -90250901 - L1Md_T LINE L1 0 6582 1665 6 1400 1041 201 75 40 chr1 106944538 106944838 -90250594 + MT2B LTR ERVL 99 493 0 6 1400 632 292 31 49 chr1 106945299 106945522 -90249910 + ORR1E LTR MaLR 141 359 0 6 1400 272 315 51 61 chr1 106945800 106945898 -90249534 + ID_B1 SINE B4 80 176 -48 6 1400 266 390 10 20 chr1 106945808 106945910 -90249522 + PB1D10 SINE Alu 7 107 -10 6 1400 2131 143 86 6 chr1 106945974 106946333 -90249099 + ORR1B1 LTR MaLR 1 388 -6 6 1400 972 102 8 0 chr1 106946334 106946591 -90248841 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 6 1400 1100 302 28 37 chr1 106948174 106948500 -90246932 - MTE2a LTR MaLR 0 379 57 6 1400 691 290 37 49 chr1 106948543 106948669 -90246763 - MTEa LTR MaLR -107 272 157 6 1400 1155 264 147 11 chr1 106948669 106949036 -90246396 + MTD LTR MaLR 3 419 0 6 1400 691 290 37 49 chr1 106949036 106949152 -90246280 - MTEa LTR MaLR -223 156 33 6 1400 2330 209 80 40 chr1 106949267 106949378 -90246054 - RMER1B Other Other 0 1066 957 6 1400 183 80 0 0 chr1 106949378 106949403 -90246029 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 6 1400 2330 210 108 36 chr1 106949403 106950115 -90245317 - RMER1B Other Other -110 956 49 6 1400 759 22 0 0 chr1 106951114 106951203 -90244229 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 6 1400 1022 210 127 30 chr1 106951643 106951942 -90243490 + Lx7 LINE L1 7369 7696 0 6 1400 4052 182 25 6 chr1 106953260 106954138 -90241294 + L1_Mur2 LINE L1 1122 2032 -3845 6 21 16450 71 11 1 chr1 106954134 106956277 -90239155 + L1Md_F2 LINE L1 3422 5586 -297 6 1401 7898 71 8 2 chr1 106956278 106957251 -90238181 + L1Md_F2 LINE L1 5588 6566 -16 6 1401 204 86 0 54 chr1 106957313 106957350 -90238082 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1401 1158 259 37 22 chr1 106957384 106957739 -90237693 + Lx5 LINE L1 5806 6165 -885 6 1401 3545 230 46 11 chr1 106957754 106958500 -90236932 + Lx5 LINE L1 6276 7047 -3 6 1401 228 338 71 71 chr1 106959171 106959309 -90236123 - L2 LINE L2 -717 2702 2554 6 1401 243 0 0 0 chr1 106959309 106959336 -90236096 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1401 228 338 71 71 chr1 106959336 106959449 -90235983 - L2 LINE L2 -866 2553 2451 6 1401 2584 191 98 6 chr1 106959524 106960046 -90235386 + RMER1B Other Other 497 1066 0 6 1401 588 268 76 34 chr1 106960039 106960341 -90235091 + L1M4 LINE L1 5188 5500 -664 6 1401 230 352 79 11 chr1 106961479 106961568 -90233864 + B1_Mur3 SINE Alu 3 97 -52 6 1401 986 83 14 0 chr1 106961734 106961879 -90233553 + (GAAA)n Simple_repeat Simple_repeat 3 149 0 6 1401 268 296 128 0 chr1 106962135 106962260 -90233172 - L2a LINE L2 -4 3422 3282 6 1401 216 0 0 0 chr1 106962316 106962340 -90233092 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1401 711 198 361 19 chr1 106962351 106962567 -90232865 - B4A SINE B4 -1 291 2 6 1401 383 294 46 38 chr1 106963166 106963297 -90232135 - MIRb SINE MIR -129 139 8 6 1401 375 242 20 10 chr1 106965295 106965395 -90230037 + MER34A LTR ERV1 4 104 -467 6 1401 663 267 159 37 chr1 106965772 106966068 -90229364 + Lx8 LINE L1 6089 6420 -1053 6 1401 281 287 54 81 chr1 106966148 106966223 -90229209 + B4A SINE B4 1 78 -214 6 1401 488 81 0 13 chr1 106966223 106966298 -90229134 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1401 281 287 54 81 chr1 106966298 106966370 -90229062 + B4A SINE B4 79 144 -148 6 1401 1253 244 219 123 chr1 106966406 106967113 -90228319 + Lx8 LINE L1 6558 7332 -141 6 1401 1487 177 23 62 chr1 106967132 106967439 -90227993 - ORR1C1 LTR MaLR -26 352 58 6 1401 3654 175 16 8 chr1 106967440 106967576 -90227856 - RLTR25B LTR ERVK -191 837 799 6 1401 486 0 0 0 chr1 106967576 106967630 -90227802 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1401 3654 194 52 39 chr1 106967630 106968417 -90227015 - RLTR25B LTR ERVK -230 798 1 6 1401 321 180 16 0 chr1 106968417 106968471 -90226961 - ORR1C1 LTR MaLR -329 55 1 6 1401 342 261 0 32 chr1 106968496 106968591 -90226841 + GA-rich Low_complexity Low_complexity 3 94 0 6 1401 390 350 118 49 chr1 106968799 106969189 -90226243 - MT2A LTR ERVL -116 417 1 6 1401 585 28 0 0 chr1 106969434 106969505 -90225927 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 6 1401 892 182 24 6 chr1 106969671 106969837 -90225595 - MTC LTR MaLR 0 421 253 6 1401 2067 246 41 81 chr1 106969837 106970451 -90224981 - Lx5 LINE L1 -602 6858 6033 6 1401 1211 82 0 0 chr1 106970451 106970597 -90224835 - B1_Mm SINE Alu 0 147 2 6 1401 2067 243 37 11 chr1 106970597 106970772 -90224660 - Lx5 LINE L1 -1018 6032 5861 6 1401 2119 216 40 11 chr1 106970823 106971301 -90224131 - RLTR16 LTR ERVK -13 492 1 6 1401 3118 166 33 9 chr1 106971302 106971849 -90223583 - Lx5 LINE L1 -30 5847 5288 6 1401 668 201 42 0 chr1 106971849 106971993 -90223439 - MTC LTR MaLR -220 201 52 6 1401 536 192 0 37 chr1 106971971 106972079 -90223353 - B1_Mus2 SINE Alu -5 142 39 6 1401 1346 232 77 61 chr1 106972123 106972398 -90223034 + ORR1D2 LTR MaLR 1 281 -89 6 1401 2355 139 60 100 chr1 106972398 106972846 -90222586 + RLTR23 LTR ERV1 1 430 0 6 1401 1346 232 77 61 chr1 106972846 106972933 -90222499 + ORR1D2 LTR MaLR 282 369 -1 6 1401 485 125 11 0 chr1 106973904 106973992 -90221440 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 6 1401 646 307 83 30 chr1 106974041 106974306 -90221126 - B4A SINE B4 -12 280 2 6 1401 189 333 0 0 chr1 106974729 106974780 -90220652 - L2c LINE L2 -49 3338 3288 6 1401 405 0 0 0 chr1 106975169 106975214 -90220218 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1401 511 321 128 78 chr1 106975450 106975964 -90219468 + MER34A1 LTR ERV1 14 553 -34 6 1401 230 299 101 22 chr1 106977154 106977243 -90218189 + ID_B1 SINE B4 81 176 -48 6 1401 330 280 43 0 chr1 106977172 106977265 -90218167 + PB1D10 SINE Alu 21 117 0 6 1401 612 259 88 42 chr1 106977270 106977463 -90217969 + B3 SINE B2 1 202 -14 6 1401 1342 6 29 0 chr1 106977463 106977638 -90217794 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1401 296 296 25 0 chr1 106977667 106977748 -90217684 + GA-rich Low_complexity Low_complexity 3 85 0 6 1401 224 265 57 29 chr1 106978251 106978321 -90217111 - ID SINE ID -149 75 4 6 1401 309 312 125 43 chr1 106979273 106979324 -90216108 - RMER15 LTR ERVL -2 573 521 6 1401 498 75 0 0 chr1 106979324 106979391 -90216041 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1401 309 312 125 43 chr1 106979391 106979547 -90215885 - RMER15 LTR ERVL -55 520 349 6 1401 1832 221 50 97 chr1 106979635 106979744 -90215688 - RLTR20A LTR ERVK -30 511 442 6 1401 1353 88 50 6 chr1 106979744 106979926 -90215506 - B2_Mm2 SINE B2 -4 191 2 6 1401 1832 221 50 97 chr1 106979926 106980352 -90215080 - RLTR20A LTR ERVK -100 441 1 6 1401 225 0 0 0 chr1 106980643 106980668 -90214764 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1401 281 296 141 47 chr1 106980802 106981066 -90214366 + ORR1E LTR MaLR 1 298 -76 6 1401 267 241 25 25 chr1 106981709 106981790 -90213642 + MER34A1 LTR ERV1 433 513 -74 6 1401 309 275 97 21 chr1 106982277 106982370 -90213062 + ID_B1 SINE B4 1 100 -124 6 1401 184 194 29 101 chr1 106982399 106982468 -90212964 - L3 LINE CR1 -1597 2892 2829 6 1401 2092 113 6 70 chr1 106982567 106982910 -90212522 + ORR1A4 LTR MaLR 1 321 -8 6 1401 317 289 34 75 chr1 106982985 106983131 -90212301 + RLTR14 LTR ERV1 241 380 -2 6 1401 211 318 44 33 chr1 106983143 106983234 -90212198 + B1F SINE Alu 47 138 -11 6 1401 226 242 0 29 chr1 106983256 106983324 -90212108 + LTR37A LTR ERV1 139 204 -222 6 1401 1107 199 39 10 chr1 106983346 106983549 -90211883 - MTD LTR MaLR -15 404 196 6 1401 907 248 19 15 chr1 106983559 106983764 -90211668 - Lx5 LINE L1 0 7050 6845 6 1401 530 320 58 35 chr1 106983892 106984235 -90211197 + RLTR15 LTR ERVK 1 351 -8 6 1401 241 419 59 0 chr1 106984439 106984575 -90210857 + LTR16A LTR ERVL 308 451 0 6 1401 306 311 27 20 chr1 106986085 106986224 -90209208 + L1M3 LINE L1 5441 5579 -585 6 1401 360 0 0 0 chr1 106986644 106986684 -90208748 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1401 380 302 29 52 chr1 106986702 106986789 -90208643 - RMER12 LTR ERVK -471 851 768 6 1401 479 308 24 48 chr1 106986789 106986956 -90208476 - RSINE1 SINE B4 0 165 3 6 1401 380 302 29 52 chr1 106986956 106987004 -90208428 - RMER12 LTR ERVK -555 767 719 6 1401 707 336 48 23 chr1 106987198 106987597 -90207835 - L1MA5 LINE L1 -125 6175 5767 6 1401 551 309 102 8 chr1 106987608 106987853 -90207579 - MER57D LTR ERV1 -19 392 125 6 1401 387 192 0 0 chr1 106987853 106987931 -90207501 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1401 430 211 106 30 chr1 106988067 106988199 -90207233 + MER57C2 LTR ERV1 291 432 -2 6 1401 260 241 224 22 chr1 106988264 106988377 -90207055 + MIRc SINE MIR 12 147 -129 6 1401 339 258 140 29 chr1 106988511 106988647 -90206785 - MTEa LTR MaLR -18 361 211 6 1401 371 313 8 73 chr1 106988835 106988959 -90206473 - MTEa LTR MaLR -250 129 14 6 1401 588 121 0 0 chr1 106989974 106990065 -90205367 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 7 1401 186 43 0 0 chr1 106991999 106992022 -90203410 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1401 343 248 10 10 chr1 106992104 106992206 -90203226 + (CA)n Simple_repeat Simple_repeat 1 102 0 7 1401 686 263 21 15 chr1 106993280 106993585 -90201847 + MTE2b LTR MaLR 15 367 -12 7 1401 262 254 59 15 chr1 106994399 106994467 -90200965 - ID4_ SINE ID -11 72 2 7 1401 477 296 32 0 chr1 106994711 106994836 -90200596 + B4A SINE B4 15 143 -149 7 1401 427 320 58 26 chr1 106994863 106995017 -90200415 + B4 SINE B4 123 281 -11 7 1401 479 82 14 0 chr1 106995026 106995099 -90200333 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1401 231 280 154 39 chr1 106995202 106995306 -90200126 + PB1D9 SINE Alu 5 120 0 7 1401 586 279 74 32 chr1 106995448 106995637 -90199795 + B3 SINE B2 1 197 -19 7 1401 576 188 67 15 chr1 106996411 106996546 -90198886 + BC1_Mm scRNA scRNA 1 142 -10 7 1401 413 189 35 78 chr1 106996556 106996671 -90198761 + RMER1B Other Other 946 1055 -11 7 1401 583 314 53 0 chr1 106996677 106996846 -90198586 - MTE2b LTR MaLR -105 274 97 7 1401 2154 232 44 46 chr1 106997951 106998531 -90196901 - RLTR18 LTR ERVK 0 616 23 7 1401 519 17 0 0 chr1 106998553 106998613 -90196819 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 1401 198 0 0 0 chr1 106998613 106998634 -90196798 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1401 530 238 8 8 chr1 106999226 106999349 -90196083 - MER5A1 DNA MER1_type -4 162 40 7 1401 327 324 108 0 chr1 106999898 107000000 -90195432 + ID_B1 SINE B4 4 116 -108 7 1401 327 313 20 0 chr1 107000000 107000099 -90195333 + ID_B1 SINE B4 117 217 -7 1 1401 952 245 77 68 chr1 107000044 107000366 -90195066 + MTEa LTR MaLR 43 361 -18 2 1401 1234 254 72 15 chr1 107000517 107000920 -90194512 - LTR37A LTR ERV1 0 426 1 3 1401 418 305 50 43 chr1 107001400 107001561 -90193871 + B4A SINE B4 1 162 -130 4 1401 397 308 5 93 chr1 107001561 107001604 -90193828 + B3A SINE B2 1 186 -12 5 1401 607 96 9 19 chr1 107002768 107002874 -90192558 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 6 1401 189 354 89 11 chr1 107002995 107003175 -90192257 - MIR SINE MIR -40 222 29 7 1401 447 19 0 0 chr1 107003517 107003569 -90191863 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1401 613 315 0 0 chr1 107003725 107003871 -90191561 + RSINE1 SINE B4 3 148 -17 9 1401 203 200 0 22 chr1 107005086 107005132 -90190300 + CT-rich Low_complexity Low_complexity 2 46 0 1 1401 443 222 107 36 chr1 107005176 107005288 -90190144 - B1F SINE Alu -2 147 28 1 1401 652 256 36 0 chr1 107005636 107005773 -90189659 - B1_Mur1 SINE Alu -1 148 7 1 1401 499 267 73 49 chr1 107006059 107006097 -90189335 + B3 SINE B2 1 34 -182 1 1401 6825 67 4 4 chr1 107006097 107006917 -90188515 + L1_Mus1 LINE L1 5745 6564 -3 1 1401 2839 69 0 6 chr1 107006916 107007268 -90188164 + L1Md_F2 LINE L1 6232 6581 -1 1 1401 499 267 73 49 chr1 107007268 107007433 -90187999 + B3 SINE B2 35 209 -7 1 1401 22 35 0 0 chr1 107009281 107009310 -90186122 + AT_rich Low_complexity Low_complexity 1 29 0 1 1401 1060 199 5 5 chr1 107010070 107010267 -90185165 + URR1A DNA MER1_type 30 226 0 1 1401 208 237 33 17 chr1 107010480 107010540 -90184892 - MIRc SINE MIR -192 76 16 1 1401 243 61 0 0 chr1 107010963 107010996 -90184436 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 1 1401 482 248 121 84 chr1 107011055 107011377 -90184055 + MLT1B LTR MaLR 55 388 -2 2 1401 326 280 165 52 chr1 107011483 107011619 -90183813 + RMER17D2 LTR ERVK 91 249 -560 2 1401 427 215 244 12 chr1 107011619 107011779 -90183653 + B3A SINE B2 1 197 -1 2 1401 326 280 165 52 chr1 107011779 107011872 -90183560 + RMER17D2 LTR ERVK 250 346 -463 2 1401 528 81 0 0 chr1 107011985 107012059 -90183373 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1401 22 0 0 0 chr1 107012791 107012813 -90182619 + AT_rich Low_complexity Low_complexity 1 22 0 2 1401 550 225 99 15 chr1 107013236 107013367 -90182065 + B1_Mur3 SINE Alu 1 142 -7 2 1401 348 24 0 0 chr1 107013443 107013484 -90181948 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1401 2800 178 73 13 chr1 107015700 107015790 -90179642 - RLTR20A2 LTR ERVK 0 578 478 2 1401 396 0 0 0 chr1 107015790 107015834 -90179598 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1401 2800 178 73 13 chr1 107015834 107016288 -90179144 - RLTR20A2 LTR ERVK -101 477 1 2 1401 219 69 0 0 chr1 107018021 107018050 -90177382 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1401 927 189 173 0 chr1 107018434 107018625 -90176807 + URR1B DNA MER1_type 1 224 -1 3 1401 363 96 0 0 chr1 107018824 107018876 -90176556 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1401 427 271 183 39 chr1 107018916 107019173 -90176259 - MER44A DNA MER2_type -38 301 8 3 1401 275 211 39 13 chr1 107019227 107019304 -90176128 + CT-rich Low_complexity Low_complexity 1 79 0 3 1401 23 68 0 0 chr1 107019387 107019431 -90176001 + AT_rich Low_complexity Low_complexity 1 44 0 3 1401 435 38 0 0 chr1 107019792 107019845 -90175587 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1401 901 184 99 25 chr1 107019895 107020096 -90175336 + B3 SINE B2 1 216 0 3 1401 312 83 0 0 chr1 107020677 107020725 -90174707 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1401 261 0 0 0 chr1 107020856 107020885 -90174547 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1401 347 346 134 50 chr1 107021383 107021763 -90173669 - MLT1C LTR MaLR 0 467 56 3 1401 336 311 24 24 chr1 107021831 107021956 -90173476 + ID_B1 SINE B4 98 222 -2 4 1401 495 219 66 66 chr1 107022153 107022290 -90173142 + B1F1 SINE Alu 11 147 -2 4 1401 429 286 56 35 chr1 107022294 107022526 -90172906 - L1M5 LINE L1 -636 5528 5292 4 1401 184 365 35 9 chr1 107022678 107022794 -90172638 + MIR3 SINE MIR 41 159 -49 4 1401 186 43 0 0 chr1 107022879 107022902 -90172530 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1401 260 267 176 0 chr1 107024010 107024141 -90171291 - L1ME2z LINE L1 -3 6441 6288 4 1401 22 0 0 0 chr1 107025117 107025139 -90170293 + AT_rich Low_complexity Low_complexity 1 22 0 4 1401 195 42 0 0 chr1 107025254 107025278 -90170154 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1401 231 264 54 27 chr1 107026014 107026088 -90169344 - MER70B LTR ERVL -434 144 69 4 1401 1084 308 99 17 chr1 107026183 107026600 -90168832 - Lx6 LINE L1 -26 7434 6617 4 1401 1106 42 0 14 chr1 107026600 107026745 -90168687 + (TCC)n Simple_repeat Simple_repeat 2 144 0 5 1401 358 350 135 55 chr1 107026745 107026818 -90168614 - Lx6 LINE L1 -442 6616 6529 4 1401 4158 201 35 21 chr1 107026848 107028139 -90167293 - Lx6 LINE L1 -879 6581 5021 5 1401 240 303 52 15 chr1 107028179 107028313 -90167119 + HAL1 LINE L1 1464 1602 -905 5 1401 321 336 130 0 chr1 107028327 107028473 -90166959 - MER45A DNA Tip100 -10 168 4 5 1401 382 303 246 21 chr1 107028518 107028798 -90166634 + MTE2b LTR MaLR 1 343 -36 5 1401 26 0 0 0 chr1 107029546 107029572 -90165860 + AT_rich Low_complexity Low_complexity 1 26 0 5 1401 510 290 21 0 chr1 107029578 107029723 -90165709 - B1F2 SINE Alu 0 149 2 5 1401 23 0 0 0 chr1 107029723 107029746 -90165686 + AT_rich Low_complexity Low_complexity 1 23 0 5 1401 1509 201 88 6 chr1 107029808 107030149 -90165283 + ORR1D2 LTR MaLR 1 369 -1 5 1401 382 230 0 0 chr1 107030166 107030240 -90165192 - B3 SINE B2 -105 111 38 5 1401 633 234 36 7 chr1 107031203 107031341 -90164091 - RSINE1 SINE B4 -21 144 3 6 1401 378 266 6 22 chr1 107032119 107032163 -90163269 + (CTCA)n Simple_repeat Simple_repeat 1 42 0 6 1401 192 97 0 0 chr1 107032163 107032194 -90163238 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1401 409 274 3 0 chr1 107032194 107032548 -90162884 + (CA)n Simple_repeat Simple_repeat 1 355 0 6 1401 567 43 0 0 chr1 107032576 107032646 -90162786 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1401 240 200 9 9 chr1 107032646 107032763 -90162669 + (CA)n Simple_repeat Simple_repeat 1 117 0 6 1401 297 224 219 0 chr1 107032781 107032911 -90162521 - Lx8 LINE L1 -376 5936 5784 6 1401 231 276 98 75 chr1 107033105 107033238 -90162194 - RLTR25B LTR ERVK -449 579 444 6 1401 709 192 42 0 chr1 107033144 107033264 -90162168 - B1_Mur1 SINE Alu -8 141 17 6 1401 257 234 59 47 chr1 107033323 107033408 -90162024 - L1MD3 LINE L1 -13 7982 7897 6 1401 227 227 0 0 chr1 107033421 107033465 -90161967 - ID_B1 SINE B4 -6 218 175 6 1401 329 240 29 29 chr1 107033467 107033570 -90161862 - L1MD2 LINE L1 -408 5951 5849 7 1401 800 288 176 8 chr1 107033587 107033962 -90161470 - MLT1D LTR MaLR -3 502 65 7 1401 204 255 0 0 chr1 107034026 107034073 -90161359 + T-rich Low_complexity Low_complexity 1 47 0 7 1401 867 263 57 0 chr1 107034074 107034283 -90161149 - ID_B1 SINE B4 -1 223 3 7 1401 300 243 43 0 chr1 107034354 107034414 -90161018 - ID_B1 SINE B4 -5 219 157 7 1401 1782 162 24 99 chr1 107034414 107034797 -90160635 - ORR1B1 LTR MaLR 0 394 41 7 1401 2029 110 9 70 chr1 107034834 107035176 -90160256 + ORR1A4 LTR MaLR 9 329 0 7 1401 536 312 70 61 chr1 107035177 107035522 -90159910 - L1MD2 LINE L1 -518 5724 5377 7 1401 249 33 0 0 chr1 107035543 107035573 -90159859 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1401 505 240 0 10 chr1 107035573 107035674 -90159758 - B1_Mur2 SINE Alu -13 136 37 7 1401 735 273 36 18 chr1 107035680 107035904 -90159528 - L1MD2 LINE L1 -752 5394 5167 7 1401 183 156 0 0 chr1 107036046 107036078 -90159354 + T-rich Low_complexity Low_complexity 1 32 0 7 1401 457 224 22 129 chr1 107036245 107036470 -90158962 - L1MD2 LINE L1 -1320 4826 4626 7 1401 34950 66 8 8 chr1 107036484 107041640 -90153792 + L1Md_F3 LINE L1 446 5586 -297 8 1401 8788 36 4 2 chr1 107041640 107042634 -90152798 + L1Md_F3 LINE L1 5587 6582 -2 8 1401 497 247 249 41 chr1 107042665 107042834 -90152598 + B3 SINE B2 2 205 -11 8 1401 666 37 0 0 chr1 107043520 107043601 -90151831 + (GA)n Simple_repeat Simple_repeat 2 82 0 8 1401 271 295 25 13 chr1 107044815 107044894 -90150538 + ID4_ SINE ID 2 81 -2 8 1401 595 286 8 0 chr1 107045021 107045147 -90150285 - ID_B1 SINE B4 0 224 98 8 1401 478 245 50 7 chr1 107045174 107045314 -90150118 - B1F1 SINE Alu -1 148 3 8 1401 235 264 0 0 chr1 107045892 107045945 -90149487 - L1VL1 LINE L1 -5990 432 380 8 1401 274 254 22 81 chr1 107046113 107046240 -90149192 - ORR1E LTR MaLR -278 130 1 8 1401 447 293 60 24 chr1 107046296 107046464 -90148968 + MLT1A LTR MaLR 200 373 -1 8 1401 231 340 53 0 chr1 107046923 107047017 -90148415 + MIRb SINE MIR 134 232 -36 8 1401 22 56 0 0 chr1 107048061 107048097 -90147335 + AT_rich Low_complexity Low_complexity 1 36 0 9 1401 261 0 0 0 chr1 107048641 107048670 -90146762 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 1401 408 40 0 0 chr1 107048677 107048727 -90146705 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1401 812 213 130 5 chr1 107048732 107048916 -90146516 - ID_B1 SINE B4 -13 211 5 9 1401 396 252 200 0 chr1 107050541 107050656 -90144776 - ID_B1 SINE B4 -3 221 84 9 1401 777 306 34 22 chr1 107050801 107051068 -90144364 - MER21B LTR ERV1 -101 762 493 9 1401 479 312 58 13 chr1 107051170 107051326 -90144106 + RSINE1 SINE B4 3 165 0 9 1401 479 324 35 55 chr1 107051762 107051961 -90143471 - MER21B LTR ERV1 -415 448 254 9 1401 502 316 47 6 chr1 107052000 107052172 -90143260 + RMER5 LTR ERV1 3 181 -353 9 1401 979 241 97 27 chr1 107052774 107053072 -90142360 + RMER5 LTR ERV1 172 490 -44 9 1401 437 328 22 114 chr1 107053136 107053194 -90142238 + B4 SINE B4 37 160 -132 9 1401 453 271 0 113 chr1 107053194 107053327 -90142105 + B1_Mur1 SINE Alu 1 118 -31 9 1401 437 328 22 114 chr1 107053327 107053363 -90142069 + B4 SINE B4 161 242 -50 9 1401 230 208 0 0 chr1 107053342 107053390 -90142042 + B4A SINE B4 5 52 -240 1 1401 441 36 0 0 chr1 107053392 107053447 -90141985 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1401 665 299 10 35 chr1 107053538 107053739 -90141693 - MER21B LTR ERV1 -666 197 2 9 1401 21 0 0 0 chr1 107054614 107054635 -90140797 + AT_rich Low_complexity Low_complexity 1 21 0 1 1401 643 227 27 25 chr1 107054941 107055095 -90140337 - B3 SINE B2 -2 193 53 1 1401 387 92 0 0 chr1 107055097 107055162 -90140270 + (T)n Simple_repeat Simple_repeat 1 65 0 1 1401 217 191 95 0 chr1 107055169 107055211 -90140221 - B2_Mm2 SINE B2 -146 49 4 1 1401 1764 220 39 20 chr1 107055282 107055682 -90139750 - MTD LTR MaLR -14 405 13 1 1401 254 352 83 57 chr1 107055946 107056175 -90139257 + MLT1F2 LTR MaLR 245 479 -81 1 1401 404 253 33 175 chr1 107056963 107057174 -90138258 + MER2 DNA MER2_type 11 191 -154 1 1401 1656 184 119 3 chr1 107057446 107057790 -90137642 - ORR1C2 LTR MaLR 0 384 1 1 1401 2826 38 23 6 chr1 107058448 107058793 -90136639 - L1Md_F2 LINE L1 -1 6581 6231 1 1401 576 182 0 0 chr1 107059014 107059146 -90136286 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1401 409 258 68 74 chr1 107059146 107059309 -90136123 - RSINE1 SINE B4 0 165 4 1 1401 245 213 53 0 chr1 107060058 107060133 -90135299 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 1 1401 692 207 21 21 chr1 107060416 107060559 -90134873 - B1_Mur3 SINE Alu 0 149 7 1 1401 380 242 58 0 chr1 107060674 107060794 -90134638 - MLT2D LTR ERVL -225 189 63 1 1401 471 35 0 0 chr1 107061091 107061148 -90134284 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1401 595 278 32 38 chr1 107061896 107062053 -90133379 + RSINE1 SINE B4 4 159 -6 1 1401 255 224 92 0 chr1 107062141 107062217 -90133215 + L1MC4 LINE L1 6748 6830 -1131 1 1401 347 341 70 66 chr1 107062330 107062616 -90132816 + ORR1E LTR MaLR 64 350 -9 1 1401 234 285 74 27 chr1 107062659 107062807 -90132625 + L1MC4 LINE L1 6936 7090 -952 1 1401 25 0 0 0 chr1 107062809 107062834 -90132598 + AT_rich Low_complexity Low_complexity 1 25 0 1 1401 416 333 68 76 chr1 107062976 107063346 -90132086 + L1MC4 LINE L1 7296 7662 -380 1 1401 405 0 0 0 chr1 107063382 107063427 -90132005 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1401 243 245 2 0 chr1 107063786 107063844 -90131588 + B2_Mm2 SINE B2 1 59 -134 1 1401 294 242 211 20 chr1 107064396 107064548 -90130884 + RMER10A LTR ERVL 29 209 -233 1 1401 346 225 67 11 chr1 107064735 107064825 -90130607 + RMER10A LTR ERVL 323 417 -25 1 1401 786 216 8 86 chr1 107064879 107065122 -90130310 + RLTR19-int LTR ERVK 3507 3730 -2407 1 1401 247 206 58 14 chr1 107065581 107065650 -90129782 + MLT1C LTR MaLR 77 148 -319 1 1401 565 273 16 85 chr1 107065677 107065865 -90129567 - B3A SINE B2 -6 192 18 1 1401 1297 243 35 6 chr1 107067204 107067528 -90127904 - MT2A LTR ERVL 0 601 183 1 1401 1308 179 40 7 chr1 107067511 107067786 -90127646 - ORR1D1-int LTR MaLR -1086 284 1 1 1401 1820 177 29 55 chr1 107067786 107068169 -90127263 - ORR1D1 LTR MaLR 0 374 2 1 1401 569 237 8 0 chr1 107068495 107068613 -90126819 + PB1D9 SINE Alu 1 119 -1 1 1401 189 315 66 22 chr1 107069087 107069178 -90126254 - MIRb SINE MIR -131 137 43 1 1401 573 88 0 0 chr1 107069765 107069845 -90125587 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1401 279 0 0 0 chr1 107069845 107069876 -90125556 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1401 204 163 0 0 chr1 107069937 107069980 -90125452 + T-rich Low_complexity Low_complexity 3 45 0 1 1401 379 279 135 10 chr1 107069983 107070175 -90125257 + MER34A1 LTR ERV1 290 505 -82 1 1401 446 296 86 83 chr1 107070309 107070700 -90124732 - L1M5 LINE L1 -331 5833 5362 1 1401 1777 219 80 3 chr1 107070700 107071089 -90124343 - MTD LTR MaLR 0 419 1 1 1401 446 304 71 63 chr1 107071089 107071156 -90124276 - L1M5 LINE L1 -818 5361 5296 1 1401 453 90 0 0 chr1 107071447 107071514 -90123918 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1401 585 248 25 44 chr1 107071530 107071690 -90123742 - B3A SINE B2 -41 157 1 1 1401 314 229 29 0 chr1 107072162 107072232 -90123200 - ID4_ SINE ID -6 77 6 1 1401 436 322 21 0 chr1 107073406 107073549 -90121883 + LTR16E2 LTR ERVL 301 446 -122 1 1401 288 0 0 0 chr1 107073559 107073591 -90121841 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1401 306 0 0 0 chr1 107074749 107074783 -90120649 + (TGG)n Simple_repeat Simple_repeat 2 35 0 1 1401 17083 43 2 1 chr1 107077252 107080035 -90115397 - L1Md_F3 LINE L1 -3 6581 3795 1 1401 180 0 0 0 chr1 107080181 107080201 -90115231 + (ATG)n Simple_repeat Simple_repeat 3 22 0 1 1401 411 21 0 0 chr1 107080201 107080249 -90115183 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1401 272 272 0 47 chr1 107082373 107082458 -90112974 - PB1D10 SINE Alu -3 114 34 1 1401 365 333 16 0 chr1 107083298 107083424 -90112008 - MLT1A0 LTR MaLR -25 340 213 1 1401 353 248 135 30 chr1 107084156 107084289 -90111143 - MIRb SINE MIR -85 183 37 1 1401 286 314 39 0 chr1 107084604 107084706 -90110726 - L2a LINE L2 -10 3416 3311 1 1402 240 35 0 0 chr1 107085831 107085860 -90109572 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1402 414 0 0 0 chr1 107085932 107085978 -90109454 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1402 242 287 123 77 chr1 107086108 107086241 -90109191 + RSINE1 SINE B4 4 145 -20 1 1402 414 39 0 0 chr1 107086241 107086293 -90109139 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1402 242 287 123 77 chr1 107086293 107086314 -90109118 + RSINE1 SINE B4 146 165 0 1 1402 213 238 114 45 chr1 107087151 107087204 -90108228 + B4A SINE B4 30 88 -204 1 1402 390 181 76 26 chr1 107087204 107087331 -90108101 + B1_Mur1 SINE Alu 4 149 0 1 1402 1078 218 46 9 chr1 107087729 107088031 -90107401 - ORR1E LTR MaLR -38 341 1 1 1402 508 245 61 41 chr1 107088169 107088365 -90107067 + MER58B DNA MER1_type 110 309 -32 1 1402 195 42 0 0 chr1 107088452 107088476 -90106956 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1402 399 89 0 0 chr1 107088573 107088629 -90106803 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1402 1027 51 15 0 chr1 107088629 107088766 -90106666 - B1_Mus1 SINE Alu 0 148 10 1 1402 501 167 0 42 chr1 107089092 107089211 -90106221 - Lx LINE L1 -6 6648 6535 1 1402 25303 133 14 4 chr1 107089212 107090216 -90105216 - L1_Mus4 LINE L1 -635 6001 4917 1 1402 4879 72 0 12 chr1 107090216 107090865 -90104567 - L1Md_F2 LINE L1 -1 6581 5941 1 1402 25303 154 30 8 chr1 107090865 107095148 -90100284 - L1_Mus4 LINE L1 -967 4916 609 1 1402 246 246 102 78 chr1 107095514 107095642 -90099790 + MLT1A1 LTR MaLR 273 403 -5 1 1402 780 261 42 115 chr1 107096582 107096894 -90098538 + B4 SINE B4 4 292 0 1 1402 297 183 0 0 chr1 107096894 107096954 -90098478 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1402 268 318 0 15 chr1 107097200 107097267 -90098165 + RSINE1 SINE B4 6 71 -94 1 1402 360 0 0 0 chr1 107097299 107097339 -90098093 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1402 23 33 0 0 chr1 107097342 107097372 -90098060 + AT_rich Low_complexity Low_complexity 1 30 0 1 1402 1213 124 11 0 chr1 107097799 107097976 -90097456 + B2_Mm1t SINE B2 1 179 -14 1 1402 307 93 327 27 chr1 107098008 107098118 -90097314 + B2_Mm2 SINE B2 47 189 -6 1 1402 9276 52 0 17 chr1 107098119 107099283 -90096149 + L1Md_F2 LINE L1 4441 5584 -299 1 1402 8251 39 5 0 chr1 107099284 107100261 -90095171 + L1Md_F2 LINE L1 5587 6568 -14 1 1402 25 31 0 0 chr1 107100261 107100293 -90095139 + AT_rich Low_complexity Low_complexity 1 32 0 1 1402 23 33 0 0 chr1 107100745 107100775 -90094657 + AT_rich Low_complexity Low_complexity 1 30 0 1 1402 1359 200 119 9 chr1 107100980 107101308 -90094124 + ORR1D2 LTR MaLR 5 368 -2 1 1402 746 285 8 93 chr1 107101367 107101626 -90093806 - B4A SINE B4 0 292 56 1 1402 252 0 0 0 chr1 107101768 107101796 -90093636 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1402 1518 111 127 67 chr1 107102482 107102782 -90092650 + ORR1A3 LTR MaLR 1 318 -8 1 1402 383 233 12 0 chr1 107103412 107103498 -90091934 - Lx8 LINE L1 -358 7115 7029 1 1402 1437 194 138 28 chr1 107103509 107103561 -90091871 - ORR1B1 LTR MaLR 0 394 346 1 1402 983 105 23 28 chr1 107103561 107103738 -90091694 - L1Md_F2 LINE L1 0 6582 6407 1 1402 1437 194 138 28 chr1 107103738 107104040 -90091392 - ORR1B1 LTR MaLR -49 345 1 1 1402 2518 269 37 8 chr1 107104043 107104685 -90090747 - Lx8 LINE L1 -475 6998 6338 1 1402 500 323 48 44 chr1 107104762 107105034 -90090398 + MT2A LTR ERVL 101 373 -160 1 1402 288 0 0 0 chr1 107105120 107105152 -90090280 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1402 481 232 62 0 chr1 107105186 107105298 -90090134 - Lx8 LINE L1 -1145 6328 6210 1 1402 1053 109 0 0 chr1 107107946 107108093 -90087339 - B1_Mus1 SINE Alu 0 148 2 1 1402 244 349 147 0 chr1 107110617 107110746 -90084686 - B1F1 SINE Alu -1 148 1 1 1402 234 312 0 0 chr1 107111072 107111136 -90084296 + MER2 DNA MER2_type 4 67 -278 1 1402 1620 271 71 22 chr1 107111142 107111633 -90083799 + Lx8 LINE L1 6958 7472 -1 1 1402 413 295 70 35 chr1 107111640 107111812 -90083620 + MER2 DNA MER2_type 71 248 -97 1 1402 180 179 0 0 chr1 107111813 107111852 -90083580 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1402 1774 144 18 38 chr1 107112307 107112647 -90082785 + MTC-int LTR MaLR 924 1256 -2 1 1402 2361 161 29 15 chr1 107112653 107113064 -90082368 + MTC LTR MaLR 5 421 0 1 1402 531 329 87 27 chr1 107113128 107113347 -90082085 - B4A SINE B4 -5 287 56 1 1402 225 249 213 64 chr1 107113550 107113706 -90081726 + MIR3 SINE MIR 11 193 -83 1 1402 180 97 0 0 chr1 107113834 107113865 -90081567 + (CTAA)n Simple_repeat Simple_repeat 3 33 0 1 1402 268 337 103 7 chr1 107114214 107114363 -90081069 + MIRb SINE MIR 2 171 -97 1 1402 294 327 37 46 chr1 107114420 107114529 -90080903 + PB1D10 SINE Alu 10 117 0 1 1402 597 303 25 36 chr1 107115464 107115649 -90079783 + L1MB5 LINE L1 5587 5776 -398 1 1402 3494 28 136 0 chr1 107115649 107116083 -90079349 + MT2_Mm LTR ERVL 1 493 0 1 1402 597 303 25 36 chr1 107116083 107116171 -90079261 + L1MB5 LINE L1 5777 5857 -317 1 1402 336 298 58 35 chr1 107116176 107116350 -90079082 - RMER15 LTR ERVL -2 573 396 1 1402 2025 277 60 8 chr1 107116958 107117573 -90077859 + Lx8 LINE L1 6190 6836 -637 1 1402 1639 253 47 22 chr1 107117579 107117675 -90077757 - MTD LTR MaLR -8 411 318 1 1402 228 35 0 0 chr1 107117675 107117704 -90077728 + (TATTG)n Simple_repeat Simple_repeat 3 31 0 1 1402 1639 253 47 22 chr1 107117704 107118008 -90077424 - MTD LTR MaLR -102 317 2 1 1402 3539 224 34 84 chr1 107118013 107118954 -90076478 - MTD-int LTR MaLR -13 1245 352 1 1402 716 283 170 50 chr1 107118998 107119445 -90075987 + Lx8 LINE L1 6973 7472 -1 1 1402 450 266 31 31 chr1 107119561 107119724 -90075708 + L1MB5 LINE L1 6018 6180 0 1 1402 551 216 10 0 chr1 107121018 107121120 -90074312 + ID_B1 SINE B4 121 223 -1 2 1402 725 316 68 59 chr1 107121224 107121564 -90073868 + RMER5 LTR ERV1 1 343 -191 2 1402 255 183 27 27 chr1 107121571 107121644 -90073788 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 2 1402 626 261 18 24 chr1 107121720 107121889 -90073543 + RMER5 LTR ERV1 367 534 0 2 1402 21 0 0 0 chr1 107121995 107122016 -90073416 + AT_rich Low_complexity Low_complexity 1 21 0 2 1402 580 268 0 106 chr1 107122594 107122782 -90072650 - RMER30 DNA MER1_type -25 177 10 2 1402 2320 106 17 36 chr1 107122792 107123153 -90072279 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1402 629 267 14 0 chr1 107123157 107123303 -90072129 + B1_Mur4 SINE Alu 1 148 -2 2 1402 22737 54 0 0 chr1 107123304 107126304 -90069128 + L1Md_F2 LINE L1 2587 5586 -297 2 1402 8042 47 6 1 chr1 107126305 107127294 -90068138 + L1Md_F2 LINE L1 5588 6581 -1 2 1402 363 23 0 0 chr1 107127958 107128002 -90067430 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1402 871 263 61 71 chr1 107128017 107128312 -90067120 - B4A SINE B4 0 292 1 2 1402 287 326 114 32 chr1 107128852 107129131 -90066301 - L1ME2 LINE L1 -205 5959 5667 2 1402 234 62 0 0 chr1 107129131 107129163 -90066269 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1402 287 326 114 32 chr1 107129163 107129349 -90066083 - L1ME2 LINE L1 -498 5666 5456 2 1402 234 128 0 0 chr1 107129537 107129576 -90065856 + (GGA)n Simple_repeat Simple_repeat 2 40 0 2 1402 734 214 0 23 chr1 107129767 107129944 -90065488 + L1Md_F2 LINE L1 6410 6582 0 2 1402 418 347 70 62 chr1 107130007 107130394 -90065038 - L1MEd LINE L1 -5291 828 439 2 1402 357 293 33 41 chr1 107132372 107132493 -90062939 - PB1D7 SINE Alu 0 120 1 2 1402 232 402 0 0 chr1 107133081 107133163 -90062269 + MIR SINE MIR 38 119 -89 2 1402 728 204 203 6 chr1 107133387 107133564 -90061868 + B3 SINE B2 1 212 -4 2 1402 218 32 0 31 chr1 107133596 107133628 -90061804 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1402 2242 245 116 6 chr1 107134036 107134710 -90060722 - Lx8 LINE L1 -2 7471 6724 2 1402 916 240 68 0 chr1 107134765 107134957 -90060475 + B3 SINE B2 6 210 -6 2 1402 541 263 57 87 chr1 107136118 107136347 -90059085 + RLTR14 LTR ERV1 161 382 0 2 1402 432 295 229 33 chr1 107137274 107137610 -90057822 + MLT1C LTR MaLR 66 467 0 2 1402 917 257 192 9 chr1 107138053 107138371 -90057061 + MTEa LTR MaLR 1 376 -3 2 1402 804 291 24 29 chr1 107138465 107138714 -90056718 - ID_B1 SINE B4 -35 257 3 2 1402 387 0 0 0 chr1 107139455 107139498 -90055934 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1402 345 47 0 0 chr1 107141074 107141117 -90054315 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1402 1044 255 81 4 chr1 107141325 107141561 -90053871 - B4 SINE B4 -27 265 12 2 1402 850 219 79 16 chr1 107141717 107141907 -90053525 + B3 SINE B2 15 216 0 2 1402 348 24 0 0 chr1 107141923 107141964 -90053468 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 1402 327 351 122 49 chr1 107142270 107142615 -90052817 - MLT1H2 LTR MaLR -5 484 115 2 1402 331 257 0 39 chr1 107142619 107142696 -90052736 - ID4 SINE ID 0 83 10 2 1402 267 345 35 9 chr1 107143835 107143949 -90051483 + MIRc SINE MIR 7 123 -145 2 1402 760 257 85 50 chr1 107144203 107144264 -90051168 - B3 SINE B2 0 216 163 2 1402 696 12 0 0 chr1 107144264 107144345 -90051087 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1402 760 257 85 50 chr1 107144345 107144484 -90050948 - B3 SINE B2 -54 162 10 2 1402 194 421 14 14 chr1 107144648 107144795 -90050637 + L2a LINE L2 3280 3426 0 2 1402 232 174 22 0 chr1 107144795 107144841 -90050591 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2 1402 717 284 99 47 chr1 107144870 107145213 -90050219 - MLT1A0 LTR MaLR 0 365 5 2 1402 928 81 18 18 chr1 107145369 107145532 -90049900 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 2 1402 200 94 31 0 chr1 107145532 107145564 -90049868 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 1402 1530 232 132 19 chr1 107146264 107146346 -90049086 - RLTR20C LTR ERVK -11 523 434 2 1402 417 39 0 0 chr1 107146346 107146397 -90049035 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1402 1530 232 132 19 chr1 107146397 107146784 -90048648 - RLTR20C LTR ERVK -101 433 1 2 1402 234 269 162 15 chr1 107147520 107147588 -90047844 + ID_B1 SINE B4 22 99 -125 2 1402 432 288 75 70 chr1 107147818 107148046 -90047386 + RMER2 LTR ERV1 308 536 -31 2 1402 4659 165 60 28 chr1 107148240 107148914 -90046518 + RLTR25A LTR ERVK 1 683 -420 2 1402 288 0 0 0 chr1 107148914 107148946 -90046486 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1402 342 0 0 0 chr1 107148946 107148983 -90046449 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1402 4659 193 68 41 chr1 107148983 107149318 -90046114 + RLTR25A LTR ERVK 673 1027 -1 2 1402 1094 269 163 12 chr1 107149344 107149675 -90045757 - MTD LTR MaLR -38 381 1 2 1402 1779 285 117 101 chr1 107149677 107149903 -90045529 - MTD-int LTR MaLR -2 1256 1023 2 1402 4179 64 0 0 chr1 107149903 107150420 -90045012 + L1_Mus1 LINE L1 6050 6566 -1 2 1402 1779 285 117 101 chr1 107150420 107151273 -90044159 - MTD-int LTR MaLR -236 1022 163 2 1402 1160 82 0 0 chr1 107151273 107151419 -90044013 - B1_Mus1 SINE Alu -1 147 2 2 1402 1779 285 117 101 chr1 107151419 107151572 -90043860 - MTD-int LTR MaLR -1096 162 3 2 1402 1206 232 182 17 chr1 107151586 107151933 -90043499 - MTD LTR MaLR -15 404 1 2 1402 189 0 0 0 chr1 107152024 107152045 -90043387 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1402 444 240 113 38 chr1 107152603 107152789 -90042643 - L1MB4 LINE L1 -3 6177 5978 2 1402 286 303 18 27 chr1 107152816 107152928 -90042504 - PB1D10 SINE Alu -1 116 6 2 1402 294 73 0 0 chr1 107152986 107153027 -90042405 + (CATAT)n Simple_repeat Simple_repeat 4 44 0 2 1402 362 243 0 13 chr1 107153089 107153164 -90042268 + ID SINE ID 2 75 -149 2 1402 400 225 38 33 chr1 107153170 107153316 -90042116 - L1MB4 LINE L1 -221 5957 5808 2 1402 205 350 111 48 chr1 107154106 107154358 -90041074 - L2c LINE L2 -44 3343 3076 2 1402 1087 224 18 9 chr1 107154430 107154651 -90040781 + ID_B1 SINE B4 2 224 0 2 1402 1876 203 11 3 chr1 107154926 107155277 -90040155 + ORR1D1 LTR MaLR 1 354 -20 2 1402 2175 115 112 6 chr1 107155284 107155633 -90039799 - ORR1B1 LTR MaLR -8 386 1 2 1402 642 310 13 0 chr1 107157438 107157593 -90037839 - MTD LTR MaLR -240 179 23 2 1402 622 297 71 30 chr1 107157602 107157800 -90037632 - ID_B1 SINE B4 -18 206 1 2 1402 624 255 131 10 chr1 107158586 107158784 -90036648 - ID_B1 SINE B4 -1 223 2 2 1402 970 258 158 28 chr1 107158868 107159223 -90036209 + MTC LTR MaLR 6 406 -15 2 1402 1937 149 204 5 chr1 107159335 107159772 -90035660 + RLTR28 LTR ERVL 1 524 0 2 1402 369 0 0 0 chr1 107159788 107159829 -90035603 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1402 281 26 0 26 chr1 107160747 107160786 -90034646 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1402 373 331 52 0 chr1 107160788 107160924 -90034508 - RSINE1 SINE B4 -19 146 4 2 1402 581 241 88 61 chr1 107160971 107161188 -90034244 + ORR1E LTR MaLR 1 253 -141 2 1402 421 283 17 26 chr1 107161523 107161639 -90033793 - RMER4B LTR ERVK -127 458 344 2 1402 1376 198 123 17 chr1 107161639 107161988 -90033444 - RodERV21-int LTR ERV1 -166 4825 4440 2 1402 1777 227 109 109 chr1 107162196 107163022 -90032410 - RLTR19-int LTR ERVK -1756 4381 3556 2 1402 852 206 92 14 chr1 107163791 107163998 -90031434 - RLTR42-int LTR ERVK -4195 1327 1105 2 1402 207 0 0 0 chr1 107164179 107164202 -90031230 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2 1402 5717 211 45 37 chr1 107164371 107164625 -90030807 - RodERV21-int LTR ERV1 -2275 2716 2459 2 1402 2093 119 28 6 chr1 107164625 107164947 -90030485 - ORR1A4 LTR MaLR 0 329 1 2 1402 5717 211 45 37 chr1 107164947 107166033 -90029399 - RodERV21-int LTR ERV1 -2533 2458 1366 2 1402 347 273 13 31 chr1 107166034 107166177 -90029255 - PB1D10 SINE Alu -4 145 6 2 1402 1009 261 152 28 chr1 107166475 107166909 -90028523 + Charlie20a DNA Charlie 208 695 -112 2 1402 730 245 46 46 chr1 107167035 107167232 -90028200 + B3 SINE B2 3 199 -17 2 1402 584 254 160 53 chr1 107167241 107167336 -90028096 + B4 SINE B4 1 91 -201 2 1402 2020 187 62 114 chr1 107167336 107167952 -90027480 + RLTR31A_Mm LTR ERVK 1 584 0 2 1402 584 254 160 53 chr1 107167952 107168118 -90027314 + B4 SINE B4 92 290 -2 2 1402 732 281 81 36 chr1 107168419 107168751 -90026681 + MLT2D LTR ERVL 21 367 -47 2 1402 693 268 40 10 chr1 107169259 107169459 -90025973 - MLT1A0 LTR MaLR -4 361 156 2 1402 274 171 14 14 chr1 107169461 107169532 -90025900 + CT-rich Low_complexity Low_complexity 3 73 0 2 1402 256 319 181 55 chr1 107169536 107169735 -90025697 - MTEa LTR MaLR -73 306 83 2 1402 270 229 14 28 chr1 107169742 107169814 -90025618 - MLT1A0 LTR MaLR -211 154 84 2 1402 204 122 0 0 chr1 107170557 107170598 -90024834 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1402 226 338 0 0 chr1 107170607 107170678 -90024754 - ID4_ SINE ID -11 72 2 2 1402 241 271 23 34 chr1 107171047 107171135 -90024297 + (CATA)n Simple_repeat Simple_repeat 3 89 0 2 1402 193 198 31 20 chr1 107171140 107171238 -90024194 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 1402 276 128 28 57 chr1 107171751 107171892 -90023540 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 1402 368 185 15 61 chr1 107171906 107172038 -90023394 + (TG)n Simple_repeat Simple_repeat 1 126 0 2 1402 252 0 0 0 chr1 107172042 107172070 -90023362 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1402 353 22 0 21 chr1 107172070 107172116 -90023316 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1402 254 336 109 0 chr1 107172230 107172358 -90023074 + Lx8 LINE L1 7049 7190 -283 2 1402 743 140 0 8 chr1 107175298 107175428 -90020004 + (GGGA)n Simple_repeat Simple_repeat 2 130 0 2 1402 22 0 0 0 chr1 107175602 107175624 -90019808 + AT_rich Low_complexity Low_complexity 1 22 0 2 1402 285 29 0 0 chr1 107175692 107175726 -90019706 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1402 636 215 61 35 chr1 107177164 107177362 -90018070 - MER3 DNA MER1_type -6 203 1 2 1402 438 36 0 0 chr1 107178233 107178289 -90017143 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1402 480 156 0 0 chr1 107180260 107180350 -90015082 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1402 481 235 22 22 chr1 107181843 107181978 -90013454 - L1MA6 LINE L1 -2 6298 6164 2 1402 249 211 0 0 chr1 107181999 107182056 -90013376 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 2 1402 248 279 0 0 chr1 107182602 107182663 -90012769 - ID SINE ID -139 85 25 2 1402 239 288 24 24 chr1 107182604 107182686 -90012746 - ID4_ SINE ID -1 82 1 3 1402 550 303 53 43 chr1 107183534 107183741 -90011691 - B4 SINE B4 -2 290 82 3 1402 1636 217 94 45 chr1 107184534 107185025 -90010407 - RMER5 LTR ERV1 -2 532 18 3 1402 516 152 169 70 chr1 107185026 107185168 -90010264 - RMER1C Other Other -76 1266 1111 3 1402 264 182 0 0 chr1 107186507 107186562 -90008870 + MIRc SINE MIR 97 151 -117 3 1402 229 47 47 0 chr1 107188889 107188932 -90006500 + B1_Mur4 SINE Alu 106 150 0 3 1402 262 61 41 0 chr1 107188942 107188991 -90006441 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1402 255 299 75 71 chr1 107189540 107189781 -90005651 + MTEb LTR MaLR 83 379 0 3 1402 327 245 80 20 chr1 107190367 107190467 -90004965 - L2a LINE L2 -16 3410 3305 3 1402 267 253 67 22 chr1 107191069 107191158 -90004274 - PB1D10 SINE Alu -10 107 15 3 1402 365 219 85 9 chr1 107191746 107191902 -90003530 + MER34A LTR ERV1 405 587 0 3 1402 2289 121 16 3 chr1 107191985 107192308 -90003124 + ORR1A2 LTR MaLR 1 327 0 3 1402 475 300 80 36 chr1 107192597 107192822 -90002610 - Ricksha_c DNA MuDR -1218 830 596 3 1402 395 240 9 63 chr1 107193002 107193113 -90002319 - PB1D10 SINE Alu -12 105 1 3 1402 297 51 0 0 chr1 107193144 107193183 -90002249 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1402 848 93 121 0 chr1 107193185 107193325 -90002107 - B2_Mm2 SINE B2 -38 157 1 3 1402 253 224 0 33 chr1 107193325 107193377 -90002055 - MLT2B3 LTR ERVL -504 50 1 3 1402 239 355 0 0 chr1 107193906 107193982 -90001450 + (CATA)n Simple_repeat Simple_repeat 2 77 0 3 1402 505 0 15 15 chr1 107193996 107194062 -90001370 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1402 270 201 137 21 chr1 107194559 107194669 -90000763 - L1ME2 LINE L1 -284 6160 6036 3 1402 25 51 0 0 chr1 107194912 107194951 -90000481 + AT_rich Low_complexity Low_complexity 1 39 0 3 1402 579 338 0 53 chr1 107194966 107195135 -90000297 - RSINE1 SINE B4 -4 161 2 3 1402 198 0 0 0 chr1 107195299 107195321 -90000111 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1402 211 167 0 48 chr1 107196276 107196339 -89999093 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 3 1402 312 27 0 0 chr1 107196342 107196379 -89999053 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1402 405 0 0 0 chr1 107196379 107196423 -89999009 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1402 317 241 75 12 chr1 107196423 107196503 -89998929 - RSINE1 SINE B4 -72 93 9 3 1402 707 267 43 26 chr1 107197263 107197494 -89997938 + B4A SINE B4 9 243 -49 3 1402 573 289 49 35 chr1 107198965 107199191 -89996241 - MTEa LTR MaLR -82 297 69 3 1402 275 340 73 44 chr1 107199361 107199635 -89995797 - B4A SINE B4 -10 282 1 3 1402 566 275 42 55 chr1 107199635 107199876 -89995556 - B4 SINE B4 -64 228 2 3 1402 253 250 0 0 chr1 107201573 107201625 -89993807 - L1MC4 LINE L1 -232 7810 7759 3 1402 831 314 144 11 chr1 107201935 107202464 -89992968 - L1MC4 LINE L1 -730 7312 6714 3 1402 246 188 71 14 chr1 107202585 107202655 -89992777 + MLT1A0 LTR MaLR 77 150 -215 3 1402 327 25 0 0 chr1 107202792 107202832 -89992600 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1402 19179 85 30 3 chr1 107202947 107206225 -89989207 + L1VL4 LINE L1 183 3550 -9 3 1402 330 26 0 0 chr1 107206229 107206268 -89989164 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1402 410 294 0 0 chr1 107206389 107206491 -89988941 + B4 SINE B4 189 290 -2 3 1402 265 228 0 0 chr1 107206520 107206577 -89988855 + MLT1A0 LTR MaLR 304 360 -5 3 1402 783 208 35 12 chr1 107207984 107208147 -89987285 - MER58A DNA MER1_type -17 207 41 3 1402 821 306 47 0 chr1 107208147 107208402 -89987030 + B4 SINE B4 3 269 -23 3 1402 369 0 0 0 chr1 107208402 107208443 -89986989 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1402 756 126 0 0 chr1 107208444 107208595 -89986837 + (GA)n Simple_repeat Simple_repeat 1 151 0 3 1402 803 285 58 52 chr1 107209579 107210150 -89985282 + L1MB3 LINE L1 5560 6128 -43 3 1402 873 271 97 15 chr1 107210153 107210412 -89985020 + B4A SINE B4 1 280 -12 3 1402 773 140 7 0 chr1 107210523 107210659 -89984773 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1402 226 267 120 0 chr1 107211614 107211689 -89983743 + MLT1C LTR MaLR 1 84 -281 3 1402 240 316 101 16 chr1 107211737 107211893 -89983539 + MLT1C LTR MaLR 208 451 -16 3 1402 369 253 110 70 chr1 107212490 107212690 -89982742 + ID_B1 SINE B4 9 216 -8 3 1402 656 278 62 19 chr1 107212870 107213079 -89982353 + ID_B1 SINE B4 2 219 -5 3 1402 328 245 84 9 chr1 107213143 107213250 -89982182 + RSINE1 SINE B4 16 130 -35 3 1402 621 140 0 32 chr1 107213256 107213441 -89981991 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1402 306 0 0 0 chr1 107213441 107213475 -89981957 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1402 198 0 0 0 chr1 107213475 107213497 -89981935 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1402 414 39 0 0 chr1 107213789 107213841 -89981591 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1402 366 347 13 26 chr1 107214117 107214271 -89981161 + L2 LINE L2 2397 2548 -871 3 1402 235 379 0 0 chr1 107214304 107214370 -89981062 - ID4_ SINE ID -3 80 15 3 1402 1661 202 65 11 chr1 107214857 107215212 -89980220 + ORR1D1 LTR MaLR 1 374 0 3 1403 300 27 0 0 chr1 107219160 107219197 -89976235 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 1403 726 304 25 57 chr1 107219264 107219546 -89975886 - B4 SINE B4 -14 278 6 3 1403 297 247 49 0 chr1 107219869 107219950 -89975482 - MLT1D LTR MaLR -9 496 412 3 1403 386 284 47 17 chr1 107220043 107220215 -89975217 - MLT1D LTR MaLR -257 248 72 3 1403 888 273 50 52 chr1 107220319 107220705 -89974727 + MTE2a LTR MaLR 1 370 -9 3 1403 287 72 18 18 chr1 107221744 107221801 -89973631 + RLTR25A LTR ERVK 1047 1103 0 3 1403 250 250 54 11 chr1 107222579 107222685 -89972747 + B1F SINE Alu 1 142 -7 3 1403 702 276 29 124 chr1 107222703 107223121 -89972311 + MTE2a LTR MaLR 1 378 -1 3 1403 276 30 0 0 chr1 107223352 107223385 -89972047 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 1403 224 91 0 22 chr1 107224612 107224657 -89970775 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1403 394 342 43 12 chr1 107225352 107225515 -89969917 + MLT1C LTR MaLR 15 182 -285 3 1403 275 320 20 10 chr1 107226019 107226117 -89969315 + GA-rich Low_complexity Low_complexity 1 99 0 3 1403 810 47 0 9 chr1 107226275 107226383 -89969049 + B1_Mm SINE Alu 31 137 -10 3 1403 299 0 73 0 chr1 107226383 107226424 -89969008 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1403 916 311 143 7 chr1 107226544 107226949 -89968483 + Lx8 LINE L1 6835 7294 -179 3 1403 547 338 121 32 chr1 107227020 107227518 -89967914 - MER21B LTR ERV1 -200 663 122 3 1403 224 175 52 17 chr1 107230093 107230151 -89965281 + (TATG)n Simple_repeat Simple_repeat 1 60 0 3 1403 907 286 17 37 chr1 107230152 107230446 -89964986 - B4A SINE B4 0 292 5 3 1403 441 0 0 0 chr1 107231059 107231108 -89964324 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1403 608 250 119 0 chr1 107231112 107231280 -89964152 - B3 SINE B2 -28 188 1 3 1403 202 154 0 25 chr1 107231659 107231699 -89963733 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 1403 563 279 154 28 chr1 107232576 107232790 -89962642 - B4 SINE B4 0 292 52 3 1403 764 256 137 30 chr1 107233748 107233982 -89961450 - B4A SINE B4 0 292 34 3 1403 884 254 162 29 chr1 107234133 107234478 -89960954 + Lx8 LINE L1 6848 7238 -235 3 1403 640 266 10 26 chr1 107234559 107234752 -89960680 - Lx6 LINE L1 -27 7433 7244 3 1403 823 293 36 21 chr1 107235245 107235524 -89959908 - B4 SINE B4 -8 284 2 3 1403 441 0 0 0 chr1 107235643 107235692 -89959740 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1403 225 191 0 0 chr1 107236472 107236519 -89958913 + A-rich Low_complexity Low_complexity 1 47 0 3 1403 317 279 42 45 chr1 107237360 107237508 -89957924 + MIRc SINE MIR 75 225 -37 3 1403 362 325 94 40 chr1 107238502 107238704 -89956728 - MLT1J2 LTR MaLR -4 444 232 3 1403 258 327 235 6 chr1 107238839 107239005 -89956427 + MER20 DNA MER1_type 1 204 -15 3 1403 537 298 97 58 chr1 107239857 107240135 -89955297 + B4 SINE B4 4 292 0 3 1403 1120 73 0 0 chr1 107240560 107240696 -89954736 + B1_Mm SINE Alu 2 137 -10 3 1403 246 32 0 0 chr1 107240696 107240727 -89954705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1403 21 0 0 0 chr1 107242436 107242457 -89952975 + AT_rich Low_complexity Low_complexity 1 21 0 3 1403 673 247 66 22 chr1 107243254 107243283 -89952149 - B3A SINE B2 -6 192 166 3 1403 444 37 0 0 chr1 107243283 107243337 -89952095 + (TATG)n Simple_repeat Simple_repeat 1 54 0 3 1403 743 219 48 1 chr1 107243337 107243489 -89951943 - B3 SINE B2 -33 165 3 3 1403 285 290 99 43 chr1 107243970 107244132 -89951300 - MIRb SINE MIR -8 260 90 3 1403 467 324 36 0 chr1 107244802 107244941 -89950491 + ID_B1 SINE B4 81 224 0 3 1403 342 221 19 12 chr1 107244941 107245101 -89950331 + GA-rich Low_complexity Low_complexity 1 161 0 3 1403 200 191 43 0 chr1 107246197 107246244 -89949188 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 3 1403 746 279 34 60 chr1 107246519 107246817 -89948615 + B4 SINE B4 1 290 -2 3 1403 565 296 69 82 chr1 107248870 107249161 -89946271 - B4 SINE B4 0 292 6 3 1403 336 24 0 0 chr1 107252114 107252155 -89943277 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1403 1121 139 112 19 chr1 107254211 107254417 -89941015 - URR1B DNA MER1_type 0 225 1 3 1403 210 139 0 0 chr1 107254549 107254585 -89940847 + (G)n Simple_repeat Simple_repeat 1 36 0 3 1403 266 202 114 45 chr1 107254790 107254878 -89940554 + MT2B LTR ERVL 165 258 -343 4 1403 681 118 10 0 chr1 107254817 107254919 -89940513 + B1_Mur3 SINE Alu 45 147 -2 4 1403 25 0 0 0 chr1 107254919 107254944 -89940488 + AT_rich Low_complexity Low_complexity 1 25 0 4 1403 378 290 83 9 chr1 107254948 107255056 -89940376 - B1F SINE Alu -7 142 27 4 1403 251 349 40 40 chr1 107255091 107255243 -89940189 - RSINE1 SINE B4 -13 152 1 4 1403 768 309 7 60 chr1 107255957 107256257 -89939175 + B4 SINE B4 5 288 -4 4 1403 434 18 18 0 chr1 107256465 107256520 -89938912 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1403 217 303 0 0 chr1 107257350 107257416 -89938016 - ID4_ SINE ID -15 68 3 4 1403 554 103 0 11 chr1 107258202 107258290 -89937142 + (GAGAA)n Simple_repeat Simple_repeat 4 90 0 4 1403 201 74 0 0 chr1 107259836 107259863 -89935569 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1403 1430 188 53 94 chr1 107259890 107260284 -89935148 - ORR1C2 LTR MaLR 0 384 7 4 1403 276 313 23 46 chr1 107260293 107260380 -89935052 - B1F2 SINE Alu -64 85 1 4 1403 180 237 0 0 chr1 107260582 107260620 -89934812 - MIRc SINE MIR -117 151 114 4 1403 643 157 123 23 chr1 107260887 107261017 -89934415 - B1_Mur4 SINE Alu -6 144 2 4 1403 400 292 138 0 chr1 107261689 107261819 -89933613 - RSINE1 SINE B4 -14 151 4 4 1403 578 310 53 74 chr1 107261874 107262212 -89933220 + MLT1B LTR MaLR 57 387 -3 4 1403 264 310 32 7 chr1 107262425 107262575 -89932857 - MIRb SINE MIR -45 223 68 4 1403 792 339 30 3 chr1 107263178 107263539 -89931893 - L1MB3 LINE L1 -74 6109 5739 4 1403 987 224 34 148 chr1 107263549 107263927 -89931505 + ORR1D1 LTR MaLR 1 335 -39 4 1403 371 306 60 20 chr1 107263959 107264159 -89931273 - L1M4 LINE L1 -765 5381 5174 4 1403 508 268 130 10 chr1 107264180 107264372 -89931060 - B3 SINE B2 -1 215 1 4 1403 229 246 33 0 chr1 107264413 107264474 -89930958 + L4 LINE RTE 1422 1484 -545 4 1403 851 292 8 0 chr1 107264654 107264904 -89930528 + L1MA4 LINE L1 4778 5029 -1114 4 1403 951 288 81 11 chr1 107264907 107265276 -89930156 + L1MA4 LINE L1 5544 5938 -362 4 1403 423 325 138 23 chr1 107265297 107265377 -89930055 + B4 SINE B4 2 83 -209 4 1403 459 0 0 0 chr1 107265377 107265428 -89930004 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1403 423 325 138 23 chr1 107265428 107265608 -89929824 + B4 SINE B4 84 291 -1 4 1403 664 165 22 11 chr1 107265649 107265827 -89929605 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1403 201 175 0 0 chr1 107265820 107265860 -89929572 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1403 926 148 0 13 chr1 107266162 107266319 -89929113 + L1_Mur3 LINE L1 1837 1991 -3889 4 1403 1583 219 21 31 chr1 107266311 107266636 -89928796 + Lx6 LINE L1 6969 7290 -170 4 1403 797 243 316 36 chr1 107266644 107267093 -89928339 + Lx8 LINE L1 6860 7443 -30 4 1403 2588 110 23 18 chr1 107267093 107267492 -89927940 + L1_Mus4 LINE L1 6236 6636 0 4 1403 797 251 151 48 chr1 107267492 107267527 -89927905 + Lx8 LINE L1 7444 7473 0 4 1403 349 295 9 18 chr1 107267855 107267969 -89927463 + PB1D10 SINE Alu 4 116 -1 4 1403 290 295 104 9 chr1 107268089 107268195 -89927237 - MER45A DNA Tip100 -17 161 46 4 1403 435 106 0 0 chr1 107268589 107268655 -89926777 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1403 240 277 59 24 chr1 107268851 107268936 -89926496 + MLT1A1 LTR MaLR 2 89 -319 4 1403 2338 244 93 76 chr1 107269132 107270032 -89925400 + RMER17B LTR ERVK 1 916 -42 4 1403 2007 124 20 58 chr1 107270749 107271091 -89924341 + ORR1A4 LTR MaLR 1 329 0 4 1403 182 339 48 16 chr1 107271396 107271522 -89923910 - MER5B DNA MER1_type -37 141 12 4 1403 833 243 18 131 chr1 107271612 107271887 -89923545 + B4 SINE B4 1 244 -48 4 1403 2413 225 78 22 chr1 107272296 107273024 -89922408 + RCHARR1 DNA MER1_type 202 970 -4 4 1403 215 368 116 39 chr1 107274304 107274485 -89920947 + B4A SINE B4 65 259 -33 4 1403 3402 141 32 5 chr1 107274493 107275057 -89920375 + Lx2 LINE L1 6419 6997 0 4 1403 195 42 0 0 chr1 107275140 107275164 -89920268 + (GGA)n Simple_repeat Simple_repeat 2 25 0 4 1403 209 204 0 0 chr1 107275164 107275208 -89920224 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1403 27 0 0 0 chr1 107275367 107275394 -89920038 + AT_rich Low_complexity Low_complexity 1 27 0 4 1403 343 178 11 22 chr1 107275403 107275495 -89919937 + (CATA)n Simple_repeat Simple_repeat 3 93 0 4 1403 3970 250 92 12 chr1 107275495 107276642 -89918790 + Lx8 LINE L1 6208 7445 -28 4 1403 1111 213 9 9 chr1 107276776 107276989 -89918443 - B3 SINE B2 -3 213 1 4 1403 485 285 82 14 chr1 107277087 107277233 -89918199 + RSINE1 SINE B4 3 158 -7 4 1403 377 277 29 14 chr1 107279267 107279406 -89916026 + B1F1 SINE Alu 1 141 -8 4 1403 330 158 0 174 chr1 107279420 107279512 -89915920 + ID4_ SINE ID 2 77 -6 4 1403 911 100 0 14 chr1 107279517 107279659 -89915773 + (GGA)n Simple_repeat Simple_repeat 2 141 0 4 1403 1102 242 100 33 chr1 107279714 107280069 -89915363 - MTE2b LTR MaLR -2 357 1 4 1403 189 0 0 0 chr1 107280197 107280218 -89915214 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1403 753 128 0 63 chr1 107280327 107280518 -89914914 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1403 418 271 0 25 chr1 107281559 107281680 -89913752 - B4A SINE B4 0 292 175 4 1403 311 297 27 9 chr1 107282850 107282962 -89912470 - MER21B LTR ERV1 -130 733 620 4 1403 366 344 82 68 chr1 107282957 107283369 -89912063 - MER21B LTR ERV1 -420 443 26 4 1403 517 320 11 17 chr1 107283627 107283808 -89911624 + MTD LTR MaLR 10 189 -230 4 1403 631 173 0 30 chr1 107283942 107284073 -89911359 + MTD LTR MaLR 278 404 -15 4 1403 228 329 12 0 chr1 107284138 107284220 -89911212 + MamRep434 DNA TcMar 2 84 -342 4 1403 427 309 21 35 chr1 107284926 107285070 -89910362 - RSINE1 SINE B4 -15 150 9 4 1403 8150 52 0 9 chr1 107285174 107285354 -89910078 - L1Md_F2 LINE L1 -8 6574 6401 4 1403 3495 25 2 0 chr1 107285354 107285749 -89909683 + MTA_Mm LTR MaLR 1 396 0 4 1403 9384 29 4 1 chr1 107285749 107286844 -89908588 + MTA_Mm-int LTR MaLR 1 1098 0 4 1403 3495 25 2 0 chr1 107286844 107287239 -89908193 + MTA_Mm LTR MaLR 1 396 0 4 1403 24667 58 7 2 chr1 107287239 107290884 -89904548 - L1Md_F2 LINE L1 -182 6400 2731 4 1403 280 329 13 0 chr1 107290884 107290960 -89904472 + B4A SINE B4 6 82 -210 4 1403 290 314 0 34 chr1 107290980 107291069 -89904363 + B4 SINE B4 142 227 -65 4 1403 2738 257 137 31 chr1 107291069 107292034 -89903398 + Lx9 LINE L1 6359 7433 -211 4 1403 396 0 0 0 chr1 107292034 107292078 -89903354 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1403 2738 257 137 31 chr1 107292078 107292269 -89903163 + Lx9 LINE L1 7434 7636 -8 4 1403 259 242 34 22 chr1 107292922 107293055 -89902377 + MLT1A LTR MaLR 252 390 0 4 1403 266 246 0 0 chr1 107293350 107293407 -89902025 + B4 SINE B4 19 75 -217 4 1403 522 54 21 42 chr1 107293436 107293532 -89901900 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 4 1403 450 219 8 22 chr1 107294343 107294707 -89900725 + (TG)n Simple_repeat Simple_repeat 1 358 0 4 1403 503 278 0 32 chr1 107294746 107294932 -89900500 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1403 333 164 43 12 chr1 107294970 107295131 -89900301 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 1403 724 106 18 0 chr1 107295135 107295248 -89900184 + RLTR16 LTR ERVK 6 120 -385 4 1403 1192 166 27 18 chr1 107295337 107295558 -89899874 + RLTR16 LTR ERVK 283 505 0 4 1403 514 232 84 7 chr1 107296087 107296230 -89899202 - MER58B DNA MER1_type -17 324 171 4 1403 314 370 41 0 chr1 107296428 107296574 -89898858 - LTR16C LTR ERVL -109 380 229 4 1403 1229 234 78 54 chr1 107296976 107297349 -89898083 - MTD LTR MaLR -14 405 33 4 1403 936 98 11 23 chr1 107297398 107297575 -89897857 + (GGAA)n Simple_repeat Simple_repeat 1 175 0 4 1403 368 281 138 30 chr1 107298128 107298359 -89897073 + MLT1F LTR MaLR 237 492 -56 4 1403 1797 143 82 45 chr1 107298364 107298744 -89896688 - ORR1B1 LTR MaLR 0 394 1 4 1403 198 0 0 0 chr1 107298757 107298779 -89896653 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 4 1403 442 260 22 73 chr1 107298808 107298945 -89896487 - ID_B1 SINE B4 -23 201 72 4 1403 919 227 105 61 chr1 107299989 107300266 -89895166 + B4 SINE B4 4 292 0 4 1403 181 194 0 0 chr1 107300693 107300724 -89894708 + L2a LINE L2 3374 3404 -22 4 1403 635 288 73 0 chr1 107300954 107300993 -89894439 + ID SINE ID 5 48 -176 4 1403 1084 205 51 29 chr1 107300993 107301344 -89894088 - RLTR15 LTR ERVK 0 359 1 4 1403 635 288 73 0 chr1 107301344 107301509 -89893923 + ID_B1 SINE B4 49 223 -1 4 1403 533 215 93 29 chr1 107301682 107301821 -89893611 + B1_Mur1 SINE Alu 2 149 0 4 1403 379 299 81 34 chr1 107301823 107301972 -89893460 + B3A SINE B2 1 156 -42 4 1403 340 221 60 191 chr1 107301963 107302131 -89893301 + B3 SINE B2 71 216 0 4 1403 250 184 41 0 chr1 107302678 107302727 -89892705 - MLT1I LTR MaLR 0 411 361 4 1403 879 37 0 0 chr1 107302871 107302978 -89892454 + (TCC)n Simple_repeat Simple_repeat 3 109 0 4 1403 726 297 9 5 chr1 107302978 107303182 -89892250 - ID_B1 SINE B4 -13 211 6 4 1403 628 288 74 19 chr1 107303331 107303547 -89891885 - MT2A LTR ERVL -105 428 201 4 1403 348 336 47 23 chr1 107304012 107304140 -89891292 - RSINE1 SINE B4 -34 131 1 4 1403 315 247 0 0 chr1 107304166 107304255 -89891177 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1403 288 351 19 38 chr1 107304329 107304489 -89890943 - MER46C DNA MER2_type -2 336 180 4 1403 527 299 29 99 chr1 107304774 107305086 -89890346 + B4A SINE B4 3 292 0 4 1403 267 31 0 0 chr1 107305113 107305145 -89890287 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1403 558 248 60 0 chr1 107305743 107305876 -89889556 + RSINE1 SINE B4 4 144 -21 4 1403 1362 270 69 9 chr1 107306317 107306780 -89888652 + RLTR18B LTR ERVK 18 508 -4 4 1403 435 291 0 25 chr1 107306787 107306907 -89888525 - ID_B1 SINE B4 -29 195 79 4 1403 564 97 0 0 chr1 107306963 107307056 -89888376 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1403 306 0 0 0 chr1 107307058 107307092 -89888340 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1403 1049 37 81 15 chr1 107307142 107307278 -89888154 + B1_Mm SINE Alu 1 145 -2 4 1403 280 279 0 102 chr1 107307864 107307952 -89887480 + PB1D10 SINE Alu 13 91 -26 5 1403 2516 86 6 0 chr1 107308354 107308679 -89886753 + ORR1A2 LTR MaLR 1 327 0 5 1403 261 0 0 0 chr1 107309019 107309048 -89886384 + (TTTCC)n Simple_repeat Simple_repeat 2 30 0 5 1403 754 248 189 19 chr1 107309305 107309612 -89885820 - MTEa LTR MaLR -4 375 17 5 1403 5715 160 77 31 chr1 107309903 107310298 -89885134 + L1_Mur1 LINE L1 80 636 -6348 5 1403 360 0 0 0 chr1 107310298 107310338 -89885094 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1403 5715 84 109 16 chr1 107310338 107310748 -89884684 + L1_Mur1 LINE L1 637 1077 -5907 5 1403 1148 58 0 19 chr1 107310748 107310907 -89884525 + L1Md_F2 LINE L1 6427 6582 0 5 1403 24728 80 13 15 chr1 107310907 107314549 -89880883 + L1_Mur1 LINE L1 1078 4693 -1193 5 1403 1672 193 56 53 chr1 107314549 107315085 -89880347 - RMER17B LTR ERVK -389 517 1 5 1403 199 315 53 18 chr1 107316025 107316138 -89879294 + MER5B DNA MER1_type 60 176 -2 5 1403 486 0 0 0 chr1 107316377 107316431 -89879001 + (CATA)n Simple_repeat Simple_repeat 1 54 0 5 1403 423 0 0 0 chr1 107317530 107317577 -89877855 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1403 297 0 0 0 chr1 107317577 107317609 -89877823 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1403 1962 208 43 7 chr1 107317614 107318079 -89877353 + RLTR11A2 LTR ERVK 17 498 -29 5 1403 409 261 171 54 chr1 107318104 107318343 -89877089 - Lx8 LINE L1 -3 7470 7204 5 1403 636 70 0 0 chr1 107318363 107318449 -89876983 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 5 1403 501 296 7 40 chr1 107318456 107318604 -89876828 - Lx8 LINE L1 -365 7108 6966 5 1403 187 189 38 0 chr1 107318606 107318659 -89876773 + CT-rich Low_complexity Low_complexity 2 56 0 5 1403 296 245 62 141 chr1 107318679 107318807 -89876625 - PB1D10 SINE Alu -20 129 12 5 1403 897 237 5 40 chr1 107320582 107320784 -89874648 - B3A SINE B2 -2 196 2 5 1403 225 256 121 12 chr1 107321009 107321092 -89874340 + LTR78 LTR ERV1 859 950 -354 5 1403 696 264 38 147 chr1 107322107 107322427 -89873005 + B4A SINE B4 8 292 0 5 1403 205 310 6 13 chr1 107322428 107322538 -89872894 + GA-rich Low_complexity Low_complexity 1 109 0 5 1403 293 304 29 7 chr1 107323329 107323465 -89871967 + L1ME2 LINE L1 5852 5990 -174 5 1403 238 283 0 0 chr1 107323548 107323608 -89871824 + RSINE1 SINE B4 62 121 -44 5 1403 675 0 0 0 chr1 107323608 107323683 -89871749 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 1403 387 0 0 0 chr1 107323685 107323728 -89871704 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1403 1496 196 47 3 chr1 107324100 107324418 -89871014 - ORR1D1 LTR MaLR -2 372 41 5 1403 445 221 262 0 chr1 107325431 107325603 -89869829 + ID_B1 SINE B4 2 218 -6 5 1403 6378 122 20 3 chr1 107326244 107327182 -89868250 - RMER17B LTR ERVK -4 954 1 5 1403 320 289 92 10 chr1 107327968 107328066 -89867366 + ID_B1 SINE B4 95 200 -24 5 1403 22 70 0 0 chr1 107328191 107328234 -89867198 + AT_rich Low_complexity Low_complexity 1 43 0 5 1403 440 305 12 0 chr1 107328592 107328722 -89866710 + ID_B1 SINE B4 3 137 -155 5 1403 207 188 0 0 chr1 107328784 107328832 -89866600 + GA-rich Low_complexity Low_complexity 4 51 0 5 1403 273 89 0 0 chr1 107328834 107328879 -89866553 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 5 1403 211 139 23 0 chr1 107329393 107329436 -89865996 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1403 445 301 43 14 chr1 107329471 107329609 -89865823 - RSINE1 SINE B4 -22 143 2 5 1403 216 0 0 0 chr1 107329642 107329666 -89865766 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1403 747 108 0 0 chr1 107331156 107331267 -89864165 + (TCTCCC)n Simple_repeat Simple_repeat 3 113 0 5 1403 212 0 36 0 chr1 107331267 107331294 -89864138 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1403 219 383 0 17 chr1 107331929 107332046 -89863386 + GA-rich Low_complexity Low_complexity 4 118 0 5 1403 231 258 0 162 chr1 107332139 107332151 -89863281 - B4 SINE B4 -14 278 270 5 1403 399 21 0 0 chr1 107332151 107332199 -89863233 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1403 231 258 0 162 chr1 107332199 107332260 -89863172 - B4 SINE B4 -23 269 217 5 1403 234 164 0 0 chr1 107332284 107332339 -89863093 + T-rich Low_complexity Low_complexity 1 55 0 5 1403 1218 61 0 0 chr1 107332342 107332490 -89862942 - B1_Mus1 SINE Alu 0 148 1 5 1403 767 162 128 25 chr1 107332496 107332692 -89862740 - B4 SINE B4 -67 225 10 5 1403 461 289 194 81 chr1 107333533 107333842 -89861590 + ORR1E LTR MaLR 10 353 -6 5 1403 664 316 92 3 chr1 107333859 107334173 -89861259 + MLT1F LTR MaLR 207 548 0 5 1403 2798 135 66 24 chr1 107334345 107334845 -89860587 + RLTR28 LTR ERVL 1 521 -3 5 1403 201 147 0 0 chr1 107335674 107335708 -89859724 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1403 305 312 192 0 chr1 107335760 107335796 -89859636 + B1F SINE Alu 1 149 0 5 1403 460 180 34 0 chr1 107335796 107335885 -89859547 + ID_B1 SINE B4 133 224 0 5 1403 515 336 7 0 chr1 107337437 107337577 -89857855 + RSINE1 SINE B4 3 143 -22 5 1403 222 118 0 0 chr1 107337584 107337618 -89857814 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1403 629 261 76 23 chr1 107337618 107337881 -89857551 - L1MB5 LINE L1 -182 5992 5716 5 1403 259 297 136 14 chr1 107338329 107338469 -89856963 - L1MA6 LINE L1 0 6300 6144 5 1403 24 32 0 0 chr1 107338474 107338505 -89856927 + AT_rich Low_complexity Low_complexity 1 31 0 5 1403 602 118 10 0 chr1 107338505 107338607 -89856825 + (TA)n Simple_repeat Simple_repeat 2 104 0 5 1403 861 145 38 0 chr1 107338676 107338807 -89856625 + B1_Mur2 SINE Alu 1 136 -13 5 1403 245 333 0 0 chr1 107338903 107338978 -89856454 + RLTR24 LTR ERV1 1 75 -454 5 1403 189 0 0 0 chr1 107339376 107339397 -89856035 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1403 1313 30 0 0 chr1 107339397 107339565 -89855867 - B2_Mm1t SINE B2 -25 168 1 5 1403 241 250 73 0 chr1 107339603 107339671 -89855761 + RSINE1 SINE B4 89 161 -4 5 1403 316 315 10 42 chr1 107339706 107339802 -89855630 + PB1D10 SINE Alu 2 94 -23 5 1403 484 321 15 0 chr1 107339716 107339847 -89855585 + ID_B1 SINE B4 90 222 -2 5 1403 1058 107 15 46 chr1 107339888 107340084 -89855348 + B2_Mm2 SINE B2 1 190 -5 5 1403 399 304 112 39 chr1 107340395 107340706 -89854726 - MLT1A LTR MaLR -40 334 1 5 1403 389 243 19 37 chr1 107340706 107340805 -89854627 + MER5A DNA MER1_type 93 189 0 5 1403 497 261 149 59 chr1 107341599 107341874 -89853558 + Lx9 LINE L1 6764 7203 -441 5 1403 2343 226 58 9 chr1 107341914 107342468 -89852964 - Lx9 LINE L1 -155 7489 6909 5 1403 690 194 27 14 chr1 107342479 107342625 -89852807 - ID_B1 SINE B4 0 224 77 5 1403 310 350 64 0 chr1 107342634 107342791 -89852641 - L1M5 LINE L1 -3685 2461 2295 5 1403 724 241 144 37 chr1 107342804 107343075 -89852357 - Lx8 LINE L1 -2 7471 7172 5 1403 6286 201 67 45 chr1 107343157 107344952 -89850480 + Lx7 LINE L1 5376 7210 -486 5 1403 186 43 0 0 chr1 107345015 107345038 -89850394 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1403 344 198 72 32 chr1 107345038 107345155 -89850277 - MTC-int LTR MaLR -65 1193 1071 5 1403 337 217 490 0 chr1 107345156 107345299 -89850133 + B3 SINE B2 1 213 -3 5 1403 609 254 97 34 chr1 107345325 107345594 -89849838 - MTC-int LTR MaLR -117 1141 856 5 1403 519 270 8 0 chr1 107345653 107345779 -89849653 + Lx8 LINE L1 6391 6517 -956 5 1403 659 288 147 12 chr1 107345965 107346285 -89849147 - MLT1A0 LTR MaLR -2 363 1 5 1403 445 270 13 44 chr1 107346380 107346539 -89848893 - MamRep1161 DNA TcMar -803 154 1 5 175 3357 178 88 120 chr1 107347222 107348283 -89847149 - RLTR25B LTR ERVK 0 1028 2 5 1404 250 51 77 0 chr1 107348284 107348323 -89847109 + L1_Mur3 LINE L1 5309 5350 -530 5 1404 240 115 17 58 chr1 107348323 107348443 -89846989 + (TTTG)n Simple_repeat Simple_repeat 1 115 0 5 1404 769 59 0 0 chr1 107348444 107348545 -89846887 - B1_Mus2 SINE Alu -2 145 45 5 1404 2412 90 228 5 chr1 107348732 107349167 -89846265 - RLTR47_MM LTR ERV1 0 532 1 5 1404 604 310 67 13 chr1 107349167 107349518 -89845914 - MuRRS4-int LTR ERV1 -51 7727 7447 5 1404 848 295 57 37 chr1 107350051 107350553 -89844879 - MuRRS4-int LTR ERV1 -1048 4015 3819 5 1404 186 103 0 0 chr1 107352425 107352454 -89842978 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1404 695 291 118 74 chr1 107354150 107354707 -89840725 + RLTR18 LTR ERVK 31 612 -4 5 1404 189 0 0 0 chr1 107355089 107355110 -89840322 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1404 21 36 0 0 chr1 107356083 107356111 -89839321 + AT_rich Low_complexity Low_complexity 1 28 0 5 1404 1301 102 0 11 chr1 107356149 107356337 -89839095 - B2_Mm2 SINE B2 -8 187 2 5 1404 46 45 0 0 chr1 107356371 107356438 -89838994 + AT_rich Low_complexity Low_complexity 1 67 0 5 1404 574 287 32 75 chr1 107356589 107356634 -89838798 + ID SINE ID 3 46 -178 5 1404 4127 34 2 0 chr1 107356634 107357111 -89838321 + L1Md_F2 LINE L1 6089 6566 -16 5 1404 574 287 32 75 chr1 107357111 107357253 -89838179 + ID_B1 SINE B4 47 182 -42 5 1404 519 303 107 31 chr1 107357631 107357895 -89837537 - MTE2b LTR MaLR -112 267 20 5 1404 377 262 146 21 chr1 107357932 107358076 -89837356 + RSINE1 SINE B4 4 165 0 5 1404 189 226 0 0 chr1 107358103 107358156 -89837276 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 5 1404 264 343 50 28 chr1 107358297 107358438 -89836994 + MLT1H1 LTR MaLR 51 194 -361 5 1404 622 313 70 55 chr1 107358601 107358986 -89836446 - MLT1C LTR MaLR -24 443 53 5 1404 23 0 0 0 chr1 107359854 107359877 -89835555 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 1169 49 7 0 chr1 107359880 107360022 -89835410 + B1_Mus2 SINE Alu 1 143 -4 5 1404 252 0 0 0 chr1 107360022 107360050 -89835382 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 5 1404 227 377 16 0 chr1 107360895 107360996 -89834436 - MIR SINE MIR -161 107 4 5 1404 206 246 46 0 chr1 107361134 107361199 -89834233 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 6 1404 257 312 52 0 chr1 107361237 107361333 -89834099 + Charlie19a DNA Charlie 127 227 -159 6 1404 226 196 35 18 chr1 107361805 107361862 -89833570 + CT-rich Low_complexity Low_complexity 4 61 0 6 1404 237 224 0 0 chr1 107361861 107361910 -89833522 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1404 23034 122 15 22 chr1 107361929 107363552 -89831880 - L1_Mus4 LINE L1 -1 6635 5041 6 1404 336 240 21 10 chr1 107363552 107363649 -89831783 + MLT1B LTR MaLR 270 367 -23 6 1404 23034 122 15 22 chr1 107363649 107363815 -89831617 - L1_Mus4 LINE L1 -1 5040 4876 6 1404 1192 49 0 0 chr1 107363815 107363957 -89831475 - B1_Mus2 SINE Alu -5 142 1 6 1404 23034 151 13 48 chr1 107363957 107365916 -89829516 - L1_Mus4 LINE L1 -1008 4875 2930 6 1404 3659 129 45 106 chr1 107365916 107366716 -89828716 - RMER17A LTR ERVK 0 751 1 6 1404 23034 151 13 48 chr1 107366716 107367925 -89827507 - L1_Mus4 LINE L1 -2954 2929 1713 6 1404 37690 67 3 4 chr1 107367919 107374320 -89821112 - L1Md_F3 LINE L1 -14 6570 215 6 1404 3531 59 7 7 chr1 107374321 107374993 -89820439 - MusHAL1 LINE L1 -2197 1156 485 6 1404 1945 221 20 24 chr1 107374989 107375443 -89819989 + Lx7 LINE L1 122 573 -7155 6 1404 1277 237 48 50 chr1 107375463 107375907 -89819525 + RLTR11A LTR ERVK 20 495 -33 6 1404 766 219 19 33 chr1 107375946 107376158 -89819274 + Lx7 LINE L1 553 761 -6967 6 1404 500 148 0 0 chr1 107376157 107376238 -89819194 + Lx7 LINE L1 5142 5222 -658 6 1404 2801 214 11 61 chr1 107376239 107377142 -89818290 + Lx7 LINE L1 5526 6362 -1098 6 1404 1653 121 16 164 chr1 107377142 107377348 -89818084 - ORR1A4 LTR MaLR 0 329 143 6 1404 4599 70 7 28 chr1 107377348 107377962 -89817470 - L1_Mus1 LINE L1 0 6567 5967 6 1404 1653 121 16 164 chr1 107377962 107378140 -89817292 - ORR1A4 LTR MaLR -187 142 2 6 1404 10163 131 59 86 chr1 107378141 107378339 -89817093 - ORR1A4-int LTR MaLR 0 1963 1775 6 1404 396 0 0 0 chr1 107378339 107378383 -89817049 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 6 1404 803 83 217 0 chr1 107378385 107378505 -89816927 + B1_Mus1 SINE Alu 1 146 -2 6 1404 276 30 0 0 chr1 107378505 107378538 -89816894 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 1404 10163 131 59 86 chr1 107378538 107380353 -89815079 - ORR1A4-int LTR MaLR -189 1774 2 6 1404 1833 131 6 60 chr1 107380353 107380686 -89814746 - ORR1A4 LTR MaLR 0 329 15 6 1404 5329 213 54 59 chr1 107380691 107381918 -89813514 + Lx7 LINE L1 6369 7596 -100 6 1404 1354 99 11 0 chr1 107381918 107382109 -89813323 + B2_Mm1t SINE B2 1 193 0 6 1404 5329 213 54 59 chr1 107382109 107382216 -89813216 + Lx7 LINE L1 7597 7696 0 6 1404 1539 133 177 25 chr1 107382258 107382431 -89813001 - RMER17C LTR ERVK 0 410 188 6 1404 750 78 0 0 chr1 107382431 107382533 -89812899 + (GGGAA)n Simple_repeat Simple_repeat 5 106 0 6 1404 1201 79 11 6 chr1 107382534 107382713 -89812719 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1404 1539 133 177 25 chr1 107382713 107382893 -89812539 - RMER17C LTR ERVK -223 187 1 6 1404 508 277 138 22 chr1 107382925 107383017 -89812415 + B4 SINE B4 1 105 -187 6 1404 363 23 0 0 chr1 107383017 107383061 -89812371 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1404 508 284 131 26 chr1 107383061 107383240 -89812192 + B4 SINE B4 106 291 -1 6 1404 342 336 0 0 chr1 107383244 107383360 -89812072 + (CA)n Simple_repeat Simple_repeat 1 116 0 6 1404 389 307 35 105 chr1 107383722 107383951 -89811481 - MLT1H LTR MaLR -198 351 139 6 1404 818 118 273 7 chr1 107385943 107386097 -89809335 - B2_Mm2 SINE B2 0 195 1 6 1404 478 280 59 106 chr1 107386427 107386491 -89808941 - B4A SINE B4 -22 270 210 6 1404 935 264 97 54 chr1 107386491 107386840 -89808592 - ORR1D2 LTR MaLR -3 367 4 6 1404 478 280 59 106 chr1 107386840 107387011 -89808421 - B4A SINE B4 -83 209 46 6 1404 251 105 0 26 chr1 107387026 107387065 -89808367 + (CCCCCT)n Simple_repeat Simple_repeat 5 42 0 6 1404 595 215 17 11 chr1 107387065 107387244 -89808188 + CT-rich Low_complexity Low_complexity 1 180 0 6 1404 412 272 70 0 chr1 107387326 107387440 -89807992 + B1F2 SINE Alu 11 132 -17 6 1404 1279 113 38 0 chr1 107387440 107387626 -89807806 + B2_Mm2 SINE B2 2 194 -1 6 1404 435 68 0 0 chr1 107387653 107387712 -89807720 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 6 1404 4242 166 63 18 chr1 107387986 107388809 -89806623 - RLTR25B LTR ERVK -168 860 1 6 1404 525 32 0 0 chr1 107389143 107389206 -89806226 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1404 399 136 0 0 chr1 107389953 107390012 -89805420 - URR1B DNA MER1_type 0 225 167 6 1404 948 65 0 8 chr1 107390096 107390221 -89805211 - B2_Mm2 SINE B2 -70 125 2 6 1404 945 189 6 23 chr1 107390340 107390513 -89804919 - URR1B DNA MER1_type -56 169 1 6 1404 890 273 125 37 chr1 107390527 107390824 -89804608 + MTE2a LTR MaLR 57 379 0 6 1404 202 241 0 85 chr1 107390986 107391045 -89804387 - L2a LINE L2 -65 3361 3308 6 1404 1100 100 0 0 chr1 107391488 107391628 -89803804 + B1_Mus1 SINE Alu 3 142 -6 6 1404 471 35 0 0 chr1 107391630 107391687 -89803745 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 6 1404 261 118 99 0 chr1 107391876 107391962 -89803470 - L1MA8 LINE L1 -155 6157 6058 6 1404 436 241 43 14 chr1 107391990 107392129 -89803303 - L1MA9 LINE L1 -348 5964 5822 6 1404 1235 68 0 0 chr1 107392205 107392351 -89803081 - B1_Mus2 SINE Alu 0 147 2 6 1404 394 203 193 50 chr1 107392785 107392925 -89802507 - B3 SINE B2 0 216 57 6 1404 2576 242 26 21 chr1 107393544 107394114 -89801318 + Lx5 LINE L1 6478 7050 0 6 1404 181 91 68 0 chr1 107394142 107394186 -89801246 + A-rich Low_complexity Low_complexity 5 51 0 6 1404 1046 75 7 58 chr1 107394587 107394742 -89800690 + B1_Mus1 SINE Alu 2 148 0 6 1404 368 317 66 90 chr1 107394757 107395016 -89800416 + L1M5 LINE L1 5505 5757 -407 6 1404 1196 238 77 27 chr1 107395016 107395353 -89800079 + ORR1E LTR MaLR 4 357 -2 6 1404 368 317 66 90 chr1 107395353 107395381 -89800051 + L1M5 LINE L1 5758 5785 -379 6 1404 477 293 153 0 chr1 107396181 107396331 -89799101 - MLT1E1A LTR MaLR -39 641 469 6 1404 710 167 26 0 chr1 107396369 107396483 -89798949 + URR1B DNA MER1_type 7 123 -102 6 1404 1175 136 131 0 chr1 107396670 107396869 -89798563 - URR1A DNA MER1_type -1 225 1 6 1404 578 201 111 17 chr1 107396895 107397067 -89798365 - Tigger6a DNA MER2_type -49 1034 847 6 1404 571 328 79 22 chr1 107397068 107397473 -89797959 - L1MB7 LINE L1 -16 6168 5741 6 1404 1393 292 37 70 chr1 107397473 107397684 -89797748 - Tigger6a DNA MER2_type -505 578 392 6 1404 797 110 8 0 chr1 107397684 107397811 -89797621 + (TTTCC)n Simple_repeat Simple_repeat 4 131 0 6 1404 1393 292 37 70 chr1 107397811 107398196 -89797236 - Tigger6a DNA MER2_type -692 391 2 6 1404 649 230 14 21 chr1 107398607 107398749 -89796683 - B3A SINE B2 -57 141 1 6 1404 240 353 29 0 chr1 107399570 107399638 -89795794 - B4A SINE B4 -82 210 141 6 1404 645 14 0 0 chr1 107399647 107399721 -89795711 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 1404 540 215 18 18 chr1 107400230 107400339 -89795093 + ID_B1 SINE B4 4 112 -112 6 1404 1406 72 32 22 chr1 107400360 107400518 -89794914 + B2_Mm2 SINE B2 2 159 -36 6 1404 279 0 0 0 chr1 107400518 107400549 -89794883 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1404 1406 72 32 22 chr1 107400549 107400575 -89794857 + B2_Mm2 SINE B2 160 188 -7 6 1404 369 0 0 0 chr1 107400617 107400658 -89794774 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1404 258 105 0 0 chr1 107400749 107400787 -89794645 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1404 479 268 160 60 chr1 107400806 107401056 -89794376 - B4A SINE B4 -17 275 1 6 1404 992 240 62 0 chr1 107401082 107401290 -89794142 - ID_B1 SINE B4 0 224 4 6 1404 396 0 0 0 chr1 107402217 107402261 -89793171 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1404 210 143 0 0 chr1 107403051 107403086 -89792346 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1404 406 357 13 13 chr1 107403731 107403870 -89791562 - MLT1C LTR MaLR -8 459 321 6 1404 1607 206 133 110 chr1 107403870 107404388 -89791044 - RMER15 LTR ERVL -1 574 45 6 1404 1239 85 6 22 chr1 107404452 107404611 -89790821 + B2_Mm1t SINE B2 1 160 -33 6 1404 387 0 0 0 chr1 107404611 107404654 -89790778 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 1404 1239 85 6 22 chr1 107404654 107404674 -89790758 + B2_Mm1t SINE B2 161 177 -16 6 1404 22 0 0 0 chr1 107405103 107405125 -89790307 + AT_rich Low_complexity Low_complexity 1 22 0 6 1404 2316 216 29 18 chr1 107405333 107405785 -89789647 + Lx7 LINE L1 6904 7359 -337 6 1404 282 56 0 0 chr1 107405785 107405821 -89789611 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 1404 2316 216 29 18 chr1 107405821 107405882 -89789550 + Lx7 LINE L1 7360 7422 -274 6 1404 387 0 0 0 chr1 107405883 107405926 -89789506 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1404 1224 48 7 20 chr1 107405965 107406113 -89789319 + B1_Mus2 SINE Alu 2 147 0 6 1404 301 82 0 47 chr1 107406113 107406177 -89789255 + (CAAAAA)n Simple_repeat Simple_repeat 6 66 0 6 1404 522 46 0 0 chr1 107406187 107406252 -89789180 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 6 1404 329 209 121 0 chr1 107406253 107406344 -89789088 + Lx7 LINE L1 7595 7696 0 6 1404 1242 74 0 0 chr1 107406352 107406500 -89788932 + B1_Mus1 SINE Alu 1 148 0 6 1404 247 302 0 0 chr1 107406506 107406559 -89788873 + B4A SINE B4 236 288 -4 6 1404 271 300 120 0 chr1 107406874 107406974 -89788458 - PB1D10 SINE Alu -5 112 1 6 1404 534 315 48 6 chr1 107406974 107407055 -89788377 - ID SINE ID -136 88 1 6 1404 494 281 80 91 chr1 107407648 107407922 -89787510 + B4 SINE B4 4 274 -18 6 1404 602 231 269 0 chr1 107408586 107408621 -89786811 + RMER21B LTR ERV1 261 300 -542 6 1404 396 0 0 0 chr1 107408621 107408665 -89786767 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1404 602 231 269 0 chr1 107408665 107408871 -89786561 + RMER21B LTR ERV1 301 566 -276 6 1404 235 307 0 74 chr1 107408878 107408959 -89786473 + RMER21B LTR ERV1 761 835 -112 6 1404 794 222 244 0 chr1 107408966 107409146 -89786286 + RodERV21-int LTR ERV1 4 227 -4764 6 1404 999 142 6 31 chr1 107409173 107409366 -89786066 - ORR1B1 LTR MaLR -186 208 1 6 1404 4487 66 46 19 chr1 107409583 107410167 -89785265 - L1_Mus2 LINE L1 0 6566 5967 6 1404 3214 41 8 0 chr1 107410191 107410578 -89784854 + L1_Mus2 LINE L1 5587 5976 -590 6 1404 460 174 80 20 chr1 107410697 107410797 -89784635 + RLTR42-int LTR ERVK 1227 1332 -4190 6 1404 261 286 108 43 chr1 107411003 107411142 -89784290 + RLTR42-int LTR ERVK 1641 1788 -3734 6 1404 1401 223 32 26 chr1 107411168 107411509 -89783923 + RodERV21-int LTR ERV1 1003 1345 -3646 6 1404 1097 223 186 112 chr1 107411521 107412037 -89783395 - RMER2 LTR ERV1 -13 554 1 6 1404 1037 145 7 0 chr1 107412043 107412195 -89783237 + RodERV21-int LTR ERV1 1374 1526 -3465 6 1404 1414 206 0 4 chr1 107412247 107412491 -89782941 + RodERV21-int LTR ERV1 1818 2060 -2931 6 1404 490 161 46 0 chr1 107412499 107412586 -89782846 + RLTR23 LTR ERV1 10 100 -330 6 1404 2995 161 26 4 chr1 107412695 107413200 -89782232 + RLTR17 LTR ERVK 98 613 -79 6 1404 2921 121 65 2 chr1 107413200 107413696 -89781736 - L1_Mur2 LINE L1 -1562 4315 3789 6 1404 1120 234 131 46 chr1 107413705 107414072 -89781360 - L1MC3 LINE L1 -152 7633 7236 6 1404 844 261 159 10 chr1 107414613 107414922 -89780510 - Lx8 LINE L1 0 7473 7119 6 1404 343 295 9 87 chr1 107416130 107416245 -89779187 - PB1D10 SINE Alu -6 111 6 6 1404 460 230 116 23 chr1 107416433 107416562 -89778870 - ID_B1 SINE B4 -3 221 81 6 1404 770 268 6 30 chr1 107416947 107417116 -89778316 + B3A SINE B2 1 165 -33 6 1404 234 0 0 0 chr1 107417120 107417146 -89778286 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1404 811 237 20 7 chr1 107418343 107418496 -89776936 - RSINE1 SINE B4 -8 157 3 7 1404 537 259 148 0 chr1 107418863 107419025 -89776407 + B4A SINE B4 1 186 -106 7 1404 1513 180 200 21 chr1 107419035 107419410 -89776022 + RMER10A LTR ERVL 1 442 0 7 1404 2181 170 124 37 chr1 107419776 107420186 -89775246 - RLTR41 LTR ERV1 0 446 1 7 1404 1129 91 14 0 chr1 107421083 107421226 -89774206 - B1_Mus1 SINE Alu -1 147 3 7 1404 13261 103 55 25 chr1 107421353 107423533 -89771899 + L1_Mur1 LINE L1 3 2217 -3669 7 1404 1278 68 0 0 chr1 107423533 107423680 -89771752 + B1_Mus1 SINE Alu 1 147 -1 7 1404 13261 84 37 35 chr1 107423680 107424665 -89770767 + L1_Mur1 LINE L1 2218 3247 -2639 7 1404 699 254 20 26 chr1 107425546 107425807 -89769625 + L1MD1 LINE L1 5232 5497 -862 7 1404 235 245 245 0 chr1 107425820 107425914 -89769518 + L1MD1 LINE L1 5476 5592 -650 7 1404 4868 10 0 0 chr1 107425914 107426483 -89768949 - L1Md_T LINE L1 0 6582 6071 7 1404 677 229 169 27 chr1 107426574 107427060 -89768372 + L1MD1 LINE L1 5631 6223 -19 7 1404 269 355 47 5 chr1 107428940 107429155 -89766277 + L1MB8 LINE L1 5765 5988 -190 7 1404 38003 62 2 2 chr1 107430019 107436217 -89759215 - L1Md_F3 LINE L1 0 6584 446 7 1404 3534 134 43 27 chr1 107436298 107437137 -89758295 + RLTR13B4 LTR ERVK 1 883 -10 7 1404 296 218 149 45 chr1 107438250 107438404 -89757028 + L1MB2 LINE L1 5176 5345 -795 7 1404 391 291 65 16 chr1 107438398 107438583 -89756849 + L1MB2 LINE L1 5917 6110 -61 7 1404 759 200 13 65 chr1 107438657 107438812 -89756620 - B1_Mur3 SINE Alu -2 147 1 7 1404 273 378 48 29 chr1 107438993 107439203 -89756229 - RMER4B LTR ERVK -365 220 7 7 1404 801 270 114 15 chr1 107439297 107439929 -89755503 + L1M2 LINE L1 4920 5625 -672 7 1404 639 121 0 0 chr1 107440571 107440670 -89754762 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 7 1404 1258 61 0 0 chr1 107441049 107441197 -89754235 + B1_Mus1 SINE Alu 1 148 0 7 1404 573 297 60 157 chr1 107441512 107441835 -89753597 + RLTR22_Mur LTR ERVK 215 542 -1306 7 1404 1246 97 51 11 chr1 107441835 107442012 -89753420 + B2_Mm1t SINE B2 2 185 -8 7 1404 1045 83 68 0 chr1 107442013 107442146 -89753286 + B1_Mus1 SINE Alu 2 143 -5 7 1404 573 297 60 157 chr1 107442146 107442471 -89752961 + RLTR22_Mur LTR ERVK 543 802 -1046 7 1404 775 196 69 103 chr1 107442448 107442710 -89752722 + RMER12 LTR ERVK 913 1165 -157 7 1404 1214 55 14 7 chr1 107442901 107443048 -89752384 + B1_Mus1 SINE Alu 1 148 0 7 1404 249 177 32 0 chr1 107443050 107443112 -89752320 + A-rich Low_complexity Low_complexity 3 66 0 7 1404 215 171 24 0 chr1 107443711 107443752 -89751680 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 7 1404 2027 128 5 85 chr1 107443771 107444217 -89751215 - RMER17C LTR ERVK 0 410 1 7 1404 198 387 21 0 chr1 107444275 107444368 -89751064 - L2b LINE L2 -291 3084 2990 7 1404 906 284 212 11 chr1 107444660 107445113 -89750319 + MER77 LTR ERVL 57 600 -7 7 1404 962 137 14 0 chr1 107447292 107447438 -89747994 - B1_Mur3 SINE Alu -1 148 1 7 1404 240 111 0 0 chr1 107447564 107447600 -89747832 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1404 1091 49 0 14 chr1 107447600 107447744 -89747688 - B1_Mm SINE Alu 0 147 6 7 1404 282 266 16 0 chr1 107447642 107447766 -89747666 - ORR1B1-int LTR MaLR -755 754 629 7 1404 27 92 0 0 chr1 107448259 107448335 -89747097 + AT_rich Low_complexity Low_complexity 1 76 0 7 1404 26 50 0 0 chr1 107448424 107448464 -89746968 + AT_rich Low_complexity Low_complexity 1 40 0 7 1404 1188 274 31 34 chr1 107449761 107450116 -89745316 + ORR1E LTR MaLR 6 359 0 7 1404 269 200 0 0 chr1 107450926 107450971 -89744461 + B3A SINE B2 1 45 -153 7 1404 26 0 0 0 chr1 107450993 107451019 -89744413 + AT_rich Low_complexity Low_complexity 1 26 0 7 1404 356 319 41 41 chr1 107451730 107451851 -89743581 - RSINE1 SINE B4 -1 164 44 7 1404 1863 160 97 5 chr1 107451869 107452240 -89743192 - MTD LTR MaLR -14 405 1 7 1404 580 189 78 7 chr1 107453063 107453217 -89742215 + L1MA9 LINE L1 5987 6151 -161 7 1404 262 329 0 0 chr1 107453218 107453291 -89742141 + GA-rich Low_complexity Low_complexity 4 76 0 7 1404 22 0 0 0 chr1 107453387 107453409 -89742023 + AT_rich Low_complexity Low_complexity 1 22 0 7 1404 736 262 69 0 chr1 107454759 107454961 -89740471 + B3 SINE B2 1 216 0 7 1404 219 36 0 0 chr1 107455997 107456025 -89739407 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 7 1404 530 254 81 40 chr1 107456395 107456543 -89738889 + ID_B1 SINE B4 16 169 -55 7 1404 270 250 38 38 chr1 107456490 107456569 -89738863 + PB1D10 SINE Alu 38 116 -1 7 1404 661 266 64 15 chr1 107457250 107457452 -89737980 - B3 SINE B2 -4 212 1 7 1404 474 213 45 32 chr1 107457792 107457947 -89737485 + MamRep434 DNA TcMar 103 259 -167 7 1404 21 71 0 0 chr1 107458406 107458448 -89736984 + AT_rich Low_complexity Low_complexity 1 42 0 7 1404 267 133 0 0 chr1 107458469 107458514 -89736918 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1404 1135 82 0 0 chr1 107458516 107458663 -89736769 - B1_Mus1 SINE Alu -1 147 1 7 1404 25 51 0 0 chr1 107458708 107458747 -89736685 + AT_rich Low_complexity Low_complexity 1 39 0 7 1404 964 214 305 7 chr1 107458805 107459097 -89736335 + MTE2b LTR MaLR 1 379 0 7 1404 981 76 0 20 chr1 107459597 107459744 -89735688 + L1Md_F2 LINE L1 6422 6565 -17 7 1404 245 226 38 0 chr1 107460447 107460500 -89734932 + B1_Mus2 SINE Alu 15 69 -78 7 1404 270 285 104 82 chr1 107460521 107460655 -89734777 - B3A SINE B2 -10 188 52 7 1404 221 171 0 0 chr1 107460770 107460811 -89734621 + A-rich Low_complexity Low_complexity 6 46 0 7 1404 1284 162 36 14 chr1 107461099 107461318 -89734114 - URR1A DNA MER1_type -2 224 1 7 1404 22 94 0 0 chr1 107462531 107462595 -89732837 + AT_rich Low_complexity Low_complexity 1 64 0 7 1404 233 193 53 0 chr1 107462924 107462981 -89732451 - Charlie5 DNA MER1_type -851 1773 1714 7 1404 7112 114 53 1 chr1 107462983 107464609 -89730823 - Lx LINE L1 -25 6629 4924 7 1404 35703 48 2 3 chr1 107464554 107469983 -89725449 + L1Md_T LINE L1 71 5589 -297 7 1404 8444 33 0 0 chr1 107469983 107470979 -89724453 + L1Md_T LINE L1 5590 6585 0 7 1404 436 241 0 27 chr1 107470995 107471106 -89724326 - Lx LINE L1 -937 4946 4839 7 1404 2740 140 15 52 chr1 107471528 107472047 -89723385 - L1_Mur2 LINE L1 -1007 4870 4371 7 1404 588 29 0 0 chr1 107472944 107473014 -89722418 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1404 248 281 0 0 chr1 107473017 107473074 -89722358 - ID4 SINE ID -23 60 4 7 1404 21 0 0 0 chr1 107473199 107473220 -89722212 + AT_rich Low_complexity Low_complexity 1 21 0 7 1404 6465 81 105 0 chr1 107473397 107474561 -89720871 - L1_Mus3 LINE L1 -3 6635 5335 7 1404 4504 121 36 8 chr1 107474549 107475272 -89720160 + L1_Mus3 LINE L1 4590 5332 -551 7 1404 215 200 0 0 chr1 107475514 107475549 -89719883 + C-rich Low_complexity Low_complexity 1 35 0 7 1404 528 226 52 15 chr1 107475550 107475685 -89719747 - B1_Mur1 SINE Alu -7 142 3 7 1404 301 162 116 14 chr1 107475718 107475787 -89719645 - PB1D9 SINE Alu 0 120 45 7 1404 309 348 22 0 chr1 107475893 107475982 -89719450 - B3 SINE B2 -125 91 1 7 1404 307 283 0 110 chr1 107477382 107477509 -89717923 - MER104 DNA Tc2 -67 114 2 7 1404 1221 34 0 0 chr1 107477808 107477955 -89717477 - B1_Mus2 SINE Alu 0 147 1 7 1404 1439 88 0 5 chr1 107477956 107478150 -89717282 - B2_Mm2 SINE B2 -1 194 2 7 1404 716 282 51 29 chr1 107478348 107478634 -89716798 + Lx8 LINE L1 5464 5776 -521 7 1404 1033 230 92 0 chr1 107478658 107478897 -89716535 + Lx8 LINE L1 7063 7323 -150 7 175 629 240 10 18 chr1 107478899 107479118 -89716314 + Lx8 LINE L1 5713 5961 -1512 7 1405 1408 235 92 8 chr1 107479135 107479495 -89715937 + Lx8 LINE L1 6299 6688 -785 7 1405 377 233 16 41 chr1 107479529 107479650 -89715782 + Lx8 LINE L1 7082 7199 -274 7 1405 278 263 106 31 chr1 107479686 107479847 -89715585 + Lx8 LINE L1 7299 7471 -2 7 1405 25 41 0 20 chr1 107479959 107479989 -89715443 + AT_rich Low_complexity Low_complexity 1 30 0 7 1405 1358 64 40 0 chr1 107479989 107480162 -89715270 - B2_Mm2 SINE B2 -14 181 2 7 1405 25 41 0 20 chr1 107480162 107480181 -89715251 + AT_rich Low_complexity Low_complexity 1 19 0 7 1405 756 211 7 0 chr1 107480258 107480400 -89715032 + B1_Mur4 SINE Alu 1 143 -7 7 1405 4183 78 25 0 chr1 107480405 107480973 -89714459 + Lx3_Mus LINE L1 6428 7009 0 7 1405 434 215 44 53 chr1 107483423 107483536 -89711896 + PB1D10 SINE Alu 6 117 0 7 1405 264 217 0 0 chr1 107483592 107483652 -89711780 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1405 276 30 0 0 chr1 107483873 107483906 -89711526 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 7 1405 216 208 293 30 chr1 107484291 107484390 -89711042 + B2_Mm2 SINE B2 1 125 -70 7 1405 324 0 0 0 chr1 107484417 107484453 -89710979 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1405 231 61 0 0 chr1 107484458 107484491 -89710941 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 7 1405 783 254 128 110 chr1 107484773 107485140 -89710292 - MTE2b LTR MaLR 0 370 1 7 1405 25 31 0 0 chr1 107486132 107486164 -89709268 + AT_rich Low_complexity Low_complexity 1 32 0 7 1405 317 309 0 0 chr1 107486326 107486407 -89709025 - ID4_ SINE ID 0 83 3 7 1405 331 230 44 44 chr1 107486422 107486513 -89708919 - B1F SINE Alu -56 93 3 7 1405 27 0 0 0 chr1 107486917 107486944 -89708488 + AT_rich Low_complexity Low_complexity 1 27 0 7 1405 393 329 27 20 chr1 107488513 107488662 -89706770 - Tigger16a DNA Tigger -6 927 778 7 1405 456 323 92 18 chr1 107489248 107489412 -89706020 + MTD LTR MaLR 2 177 -242 7 1405 250 285 72 58 chr1 107489413 107489551 -89705881 + MIRb SINE MIR 129 268 0 7 1405 426 68 68 0 chr1 107489964 107490052 -89705380 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1405 1501 45 0 0 chr1 107490442 107490620 -89704812 + L1Md_F2 LINE L1 6212 6389 -193 7 1405 1833 23 0 0 chr1 107490753 107490970 -89704462 + L1Md_F2 LINE L1 6354 6570 -12 7 1405 25 31 0 0 chr1 107491139 107491171 -89704261 + AT_rich Low_complexity Low_complexity 1 32 0 7 1405 589 290 41 51 chr1 107491318 107491514 -89703918 + B3A SINE B2 4 197 -1 8 1405 927 80 0 39 chr1 107491530 107491660 -89703772 - L1_Mus2 LINE L1 -213 6353 6229 8 1405 1613 62 5 0 chr1 107491660 107491898 -89703534 + L1_Mus2 LINE L1 6351 6566 0 8 1405 182 414 112 11 chr1 107492242 107492430 -89703002 + MIRm SINE MIR 23 229 -47 8 1405 23 0 0 0 chr1 107492583 107492606 -89702826 + AT_rich Low_complexity Low_complexity 1 23 0 8 1405 728 204 25 176 chr1 107492824 107493068 -89702364 + URR1B DNA MER1_type 1 207 -18 8 1405 219 130 56 0 chr1 107493145 107493199 -89702233 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1405 727 216 0 14 chr1 107493497 107493638 -89701794 - B1_Mus2 SINE Alu 0 147 9 8 1405 21 0 0 0 chr1 107493654 107493675 -89701757 + AT_rich Low_complexity Low_complexity 1 21 0 8 1405 387 276 68 99 chr1 107493675 107493896 -89701536 - B3 SINE B2 -1 215 2 8 1405 369 194 0 0 chr1 107494898 107494960 -89700472 + ID4 SINE ID 2 63 -20 8 1405 221 271 0 20 chr1 107495066 107495115 -89700317 + B1F1 SINE Alu 1 48 -101 8 1405 21 0 0 0 chr1 107495181 107495202 -89700230 + AT_rich Low_complexity Low_complexity 1 21 0 8 1405 333 246 0 0 chr1 107495202 107495267 -89700165 + ID4_ SINE ID 2 66 -17 8 1405 204 97 0 0 chr1 107495434 107495465 -89699967 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1405 4501 71 5 2 chr1 107496824 107497420 -89698012 + L1_Mus3 LINE L1 6039 6636 -2 8 1405 374 219 198 0 chr1 107497436 107497532 -89697900 + B3A SINE B2 1 115 -83 8 1405 390 235 0 0 chr1 107498058 107498160 -89697272 + (CA)n Simple_repeat Simple_repeat 2 103 0 8 1405 369 281 88 0 chr1 107498439 107498553 -89696879 + B1F2 SINE Alu 1 124 -25 8 1405 255 314 175 21 chr1 107498823 107498855 -89696577 + MT2A LTR ERVL 21 52 -481 8 1405 1033 163 119 0 chr1 107498855 107499057 -89696375 + URR1A DNA MER1_type 1 226 0 8 1405 293 250 137 59 chr1 107499057 107499126 -89696306 + MTEa LTR MaLR 53 130 -249 8 1405 255 314 175 21 chr1 107499126 107499213 -89696219 + MT2A LTR ERVL 53 238 -295 8 1405 425 277 169 6 chr1 107499287 107499447 -89695985 + MER34 LTR ERV1 169 354 -188 8 1405 408 309 64 7 chr1 107499616 107499756 -89695676 + B1F2 SINE Alu 1 148 -1 8 1405 278 244 105 0 chr1 107499805 107499891 -89695541 + L1M5 LINE L1 5724 5818 -422 8 1405 257 0 0 29 chr1 107500444 107500478 -89694954 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 1 1405 379 243 111 9 chr1 107500496 107500604 -89694828 - PB1D9 SINE Alu 0 120 2 2 1405 387 239 63 35 chr1 107500892 107501035 -89694397 - B1F1 SINE Alu 0 149 3 3 1405 820 270 49 172 chr1 107501502 107501927 -89693505 + MTEa LTR MaLR 7 379 0 4 1405 1086 90 0 0 chr1 107502011 107502155 -89693277 + B1_Mus2 SINE Alu 2 145 -2 5 1405 312 200 0 0 chr1 107502156 107502221 -89693211 + A-rich Low_complexity Low_complexity 1 65 0 6 1405 213 360 40 13 chr1 107502382 107502458 -89692974 + ID_B1 SINE B4 98 175 -49 7 1405 211 392 41 10 chr1 107502458 107502480 -89692952 + PB1D10 SINE Alu 17 117 0 8 1405 306 354 0 9 chr1 107502481 107502595 -89692837 + GA-rich Low_complexity Low_complexity 5 117 0 9 1405 186 133 0 0 chr1 107502595 107502625 -89692807 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1 1405 16280 16 1 0 chr1 107502801 107504691 -89690741 - L1Md_T LINE L1 -744 5139 3249 1 1405 3490 22 10 2 chr1 107504689 107505105 -89690327 + L1Md_T LINE L1 5168 5586 -297 1 1405 8256 39 1 0 chr1 107505106 107506098 -89689334 + L1Md_T LINE L1 5588 6580 -2 1 1405 4065 15 47 0 chr1 107506372 107506843 -89688589 - MT2_Mm LTR ERVL 0 493 1 1 1405 314 0 0 0 chr1 107506843 107506881 -89688551 - MERVL-int LTR ERVL 0 5485 5448 1 1405 355 181 58 46 chr1 107506881 107506968 -89688464 - ORR1A3-int LTR MaLR -1323 640 553 1 1405 44319 15 4 0 chr1 107506968 107511942 -89683490 - MERVL-int LTR ERVL -125 5360 368 1 1405 3134 3 3 0 chr1 107511942 107512305 -89683127 - MT2_Mm LTR ERVL -129 364 1 1 1405 21 36 0 0 chr1 107512960 107512988 -89682444 + AT_rich Low_complexity Low_complexity 1 28 0 1 1405 257 286 16 0 chr1 107513666 107513729 -89681703 + ID4 SINE ID 1 64 -19 1 1405 934 230 45 5 chr1 107513788 107513989 -89681443 + B3 SINE B2 1 209 -7 1 1405 607 171 7 91 chr1 107514123 107514277 -89681155 - Lx7 LINE L1 -280 7416 7276 1 1405 575 231 24 109 chr1 107514356 107514521 -89680911 + B3A SINE B2 3 153 -45 1 1405 186 43 0 0 chr1 107514521 107514544 -89680888 + (CATATA)n Simple_repeat Simple_repeat 6 28 0 2 1405 1814 145 69 104 chr1 107514673 107515164 -89680268 + IAPLTR2_Mm LTR ERVK 1 474 -1 2 1405 447 290 0 34 chr1 107516256 107516384 -89679048 - PB1 SINE Alu -2 115 2 2 1405 850 223 53 19 chr1 107516715 107516921 -89678511 + B3 SINE B2 2 214 -2 2 1405 1334 86 37 5 chr1 107517491 107517679 -89677753 - B2_Mm2 SINE B2 -1 194 1 2 1405 1337 251 39 76 chr1 107518240 107518889 -89676543 + L1MA4A LINE L1 4180 4834 -1309 2 1405 1006 271 57 53 chr1 107519034 107519540 -89675892 + L1MA4A LINE L1 5423 5930 -373 2 1405 434 336 8 16 chr1 107519561 107519685 -89675747 + RSINE1 SINE B4 3 125 -40 2 1405 342 61 0 0 chr1 107519721 107519770 -89675662 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1405 727 294 18 13 chr1 107519792 107519988 -89675444 + B3A SINE B2 3 198 -18 2 1405 214 303 68 83 chr1 107520897 107521030 -89674402 + L2b LINE L2 3250 3419 -7 2 1405 282 296 30 10 chr1 107521107 107521206 -89674226 + MLT1C LTR MaLR 1 101 -366 3 1405 487 300 7 7 chr1 107521312 107521453 -89673979 + ID_B1 SINE B4 84 224 0 3 1405 293 233 81 11 chr1 107521638 107521725 -89673707 + MTEb LTR MaLR 287 379 0 3 1405 186 167 0 0 chr1 107521826 107521862 -89673570 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1405 279 377 83 13 chr1 107521881 107522037 -89673395 + MLT1C LTR MaLR 200 366 -101 3 1405 41 21 0 0 chr1 107522052 107522100 -89673332 + AT_rich Low_complexity Low_complexity 1 48 0 3 1405 1400 121 0 14 chr1 107522147 107522356 -89673076 + ORR1A1 LTR MaLR 141 346 0 3 1405 13462 65 9 5 chr1 107522356 107524140 -89671292 + ORR1A1-int LTR MaLR 1 1792 0 3 1405 2058 76 69 0 chr1 107524140 107524428 -89671004 + ORR1A1 LTR MaLR 1 308 -38 3 1405 491 264 27 31 chr1 107524529 107524686 -89670746 - MTE2b LTR MaLR -56 323 147 3 1405 1447 63 16 5 chr1 107525003 107525195 -89670237 + B2_Mm2 SINE B2 2 195 0 3 1405 192 40 0 0 chr1 107525257 107525282 -89670150 + (CAGGC)n Simple_repeat Simple_repeat 2 26 0 3 1405 391 195 60 2 chr1 107525398 107525484 -89669948 + B1_Mur2 SINE Alu 53 143 -6 3 1405 2279 212 65 20 chr1 107525807 107526360 -89669072 + RLTR20A2 LTR ERVK 1 578 0 4 1405 1307 47 24 0 chr1 107526521 107526690 -89668742 - B2_Mm1a SINE B2 -19 174 2 4 1405 261 272 112 37 chr1 107527098 107527205 -89668227 - PB1D10 SINE Alu 0 117 3 4 1405 1192 35 14 0 chr1 107527486 107527630 -89667802 + B1_Mm SINE Alu 2 147 0 4 1405 256 24 49 0 chr1 107527630 107527671 -89667761 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 4 1405 274 239 79 11 chr1 107527717 107527806 -89667626 + Looper DNA PiggyBac 237 331 -1227 4 1405 581 263 193 20 chr1 107527794 107528089 -89667343 + Looper DNA PiggyBac 707 1052 -506 4 1405 26 50 0 0 chr1 107528262 107528302 -89667130 + AT_rich Low_complexity Low_complexity 1 40 0 4 1405 247 310 186 33 chr1 107528775 107528985 -89666447 + MIR SINE MIR 10 251 -11 4 1405 608 309 128 52 chr1 107529129 107529378 -89666054 - B4 SINE B4 -22 270 3 4 1405 21 57 0 0 chr1 107529553 107529588 -89665844 + AT_rich Low_complexity Low_complexity 1 35 0 4 1405 22 0 0 0 chr1 107529918 107529940 -89665492 + AT_rich Low_complexity Low_complexity 1 22 0 5 1405 23 0 0 0 chr1 107529991 107530014 -89665418 + AT_rich Low_complexity Low_complexity 1 23 0 5 1405 283 277 10 19 chr1 107530344 107530447 -89664985 + Lx7 LINE L1 7566 7667 -29 5 1405 273 197 105 0 chr1 107530806 107530882 -89664550 - HAL1b LINE L1 -515 1494 1411 5 1405 882 54 0 0 chr1 107531312 107531424 -89664008 + (TG)n Simple_repeat Simple_repeat 1 112 0 5 1405 673 290 7 0 chr1 107531424 107531569 -89663863 - B3A SINE B2 -52 146 1 5 1405 3948 145 6 26 chr1 107531653 107532350 -89663082 + Lx3_Mus LINE L1 5224 5906 -1103 5 1405 3199 164 20 2 chr1 107532350 107532898 -89662534 + Lx LINE L1 6097 6654 0 5 1405 284 299 0 0 chr1 107533213 107533280 -89662152 + (CATA)n Simple_repeat Simple_repeat 2 68 0 5 1405 228 67 0 0 chr1 107533369 107533399 -89662033 + (ATG)n Simple_repeat Simple_repeat 3 32 0 5 1405 26 64 0 0 chr1 107534281 107534328 -89661104 + AT_rich Low_complexity Low_complexity 1 47 0 6 1405 398 277 9 38 chr1 107534908 107535013 -89660419 + PB1D10 SINE Alu 15 116 -1 6 1405 823 220 27 46 chr1 107535013 107535232 -89660200 + B3 SINE B2 2 216 0 6 1405 273 128 0 0 chr1 107535354 107535401 -89660031 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1405 204 248 32 49 chr1 107535402 107535525 -89659907 + A-rich Low_complexity Low_complexity 1 121 0 6 1405 323 328 79 117 chr1 107535543 107535912 -89659520 + ORR1E LTR MaLR 1 355 -4 6 1405 757 170 40 72 chr1 107536218 107536370 -89659062 - B1_Mur4 SINE Alu -3 147 1 6 1405 210 105 0 0 chr1 107536741 107536779 -89658653 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 6 1405 186 43 0 0 chr1 107536786 107536809 -89658623 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1405 910 174 37 21 chr1 107536867 107537055 -89658377 + B2_Mm2 SINE B2 1 191 -4 6 1405 22 88 0 0 chr1 107537386 107537443 -89657989 + AT_rich Low_complexity Low_complexity 1 57 0 7 1405 228 328 50 8 chr1 107538573 107538693 -89656739 + L2b LINE L2 3032 3156 -219 7 1405 42 48 0 0 chr1 107539085 107539148 -89656284 + AT_rich Low_complexity Low_complexity 1 63 0 7 1405 381 117 0 0 chr1 107539152 107539212 -89656220 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1405 813 224 0 0 chr1 107539493 107539640 -89655792 - B1_Mur4 SINE Alu -1 149 3 7 1405 2625 107 39 3 chr1 107539867 107540253 -89655179 + MTB LTR MaLR 1 400 0 7 1405 596 306 60 41 chr1 107540401 107540619 -89654813 - B4A SINE B4 -21 271 50 7 1405 441 257 56 21 chr1 107540737 107540880 -89654552 - RSINE1 SINE B4 -15 150 3 7 1405 1891 244 56 36 chr1 107541568 107542176 -89653256 - L1_Mur3 LINE L1 -293 5587 4968 7 1405 551 272 23 81 chr1 107542321 107542493 -89652939 + RMER30 DNA MER1_type 23 184 -18 7 1405 22 0 0 0 chr1 107542948 107542970 -89652462 + AT_rich Low_complexity Low_complexity 1 22 0 8 1405 890 276 23 77 chr1 107543487 107543797 -89651635 + Lx8 LINE L1 6714 7006 -467 8 1405 620 306 90 61 chr1 107543891 107544235 -89651197 + ORR1E LTR MaLR 6 359 0 8 1405 23 33 0 0 chr1 107544962 107544992 -89650440 + AT_rich Low_complexity Low_complexity 1 30 0 8 1405 26 0 0 0 chr1 107546010 107546036 -89649396 + AT_rich Low_complexity Low_complexity 1 26 0 8 1405 1208 85 28 28 chr1 107546049 107546230 -89649202 - B2_Mm2 SINE B2 -14 181 1 8 1405 4030 190 73 22 chr1 107547475 107548587 -89646845 + L1_Mur3 LINE L1 896 2063 -3814 8 1405 306 0 0 0 chr1 107548587 107548621 -89646811 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1405 4030 180 80 19 chr1 107548621 107548805 -89646627 + L1_Mur3 LINE L1 2064 2247 -3630 8 1405 1649 123 0 0 chr1 107548802 107549053 -89646379 + L1_Mur3 LINE L1 4519 4769 -1108 8 1405 283 265 0 14 chr1 107549053 107549122 -89646310 - B2_Mm2 SINE B2 -127 68 1 8 1405 272 294 45 27 chr1 107549557 107549669 -89645763 + PB1D10 SINE Alu 3 116 -1 8 1405 323 239 32 103 chr1 107549878 107550004 -89645428 - PB1D10 SINE Alu 0 117 1 9 1405 22 0 0 0 chr1 107550074 107550096 -89645336 + AT_rich Low_complexity Low_complexity 1 22 0 9 1405 271 302 135 0 chr1 107550357 107550453 -89644979 + PB1D10 SINE Alu 1 109 -8 9 1405 2285 165 40 25 chr1 107550939 107551344 -89644088 + MTC LTR MaLR 3 413 -8 9 1405 186 289 26 26 chr1 107551826 107551904 -89643528 - MIR SINE MIR -71 191 114 9 1405 566 244 9 0 chr1 107552116 107552231 -89643201 + RSINE1 SINE B4 5 120 -45 9 1405 570 263 7 22 chr1 107552207 107552343 -89643089 - B1_Mur2 SINE Alu -15 134 1 9 1405 235 343 43 0 chr1 107552384 107552454 -89642978 + ID2 SINE ID 9 81 -2 9 1405 765 255 5 53 chr1 107552909 107553116 -89642316 + B3 SINE B2 5 201 -15 9 1405 790 196 14 14 chr1 107553879 107554016 -89641416 + B1_Mur1 SINE Alu 2 140 -9 9 1405 252 0 0 0 chr1 107554016 107554044 -89641388 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1405 1357 81 16 11 chr1 107555206 107555394 -89640038 - B2_Mm2 SINE B2 -5 190 2 1 1405 1207 151 61 9 chr1 107555878 107556092 -89639340 + URR1B DNA MER1_type 1 225 0 1 1405 331 248 284 48 chr1 107556269 107556402 -89639030 - RSINE1 SINE B4 0 165 2 1 1405 23 0 0 0 chr1 107557264 107557287 -89638145 + AT_rich Low_complexity Low_complexity 1 23 0 1 1405 3162 56 2 8 chr1 107557845 107558243 -89637189 + MTA_Mm LTR MaLR 1 396 0 1 1405 996 59 0 49 chr1 107562363 107562505 -89632927 - B1_Mus1 SINE Alu -12 136 2 1 1405 23 0 0 0 chr1 107562679 107562702 -89632730 + AT_rich Low_complexity Low_complexity 1 23 0 1 1405 195 212 0 0 chr1 107562706 107562739 -89632693 - MIRb SINE MIR -185 83 51 1 1405 1224 254 159 28 chr1 107563142 107563645 -89631787 - Lx8 LINE L1 -35 7438 6870 1 1405 385 291 92 78 chr1 107564171 107564324 -89631108 + B4 SINE B4 69 223 -69 1 1405 736 182 61 0 chr1 107564193 107564325 -89631107 + B1_Mus2 SINE Alu 7 146 -1 1 1405 34 24 0 0 chr1 107564489 107564530 -89630902 + AT_rich Low_complexity Low_complexity 1 41 0 1 1405 396 291 115 41 chr1 107564539 107564661 -89630771 - RSINE1 SINE B4 -32 133 3 1 1405 433 289 49 23 chr1 107564736 107565089 -89630343 - Lx8 LINE L1 -1497 6147 5780 1 1405 258 32 0 0 chr1 107565119 107565150 -89630282 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1405 889 291 28 122 chr1 107565150 107565416 -89630016 - Lx8 LINE L1 -200 5680 5437 1 1405 819 261 14 19 chr1 107565416 107565623 -89629809 - B3 SINE B2 -9 207 2 1 1405 889 291 28 122 chr1 107565623 107565865 -89629567 - Lx8 LINE L1 -444 5436 5220 1 1405 1620 36 0 0 chr1 107566050 107566246 -89629186 - L1Md_T LINE L1 0 6582 6387 1 1405 288 0 0 0 chr1 107566354 107566386 -89629046 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1405 213 280 19 123 chr1 107566410 107566516 -89628916 - PB1 SINE Alu -9 118 24 1 1405 615 157 0 0 chr1 107566705 107566813 -89628619 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1405 21 36 0 0 chr1 107567130 107567158 -89628274 + AT_rich Low_complexity Low_complexity 1 28 0 1 1405 22 56 0 0 chr1 107567420 107567456 -89627976 + AT_rich Low_complexity Low_complexity 1 36 0 1 1405 4694 54 30 2 chr1 107568182 107568792 -89626640 - L1_Mus2 LINE L1 0 6566 5940 1 1405 243 280 63 99 chr1 107569081 107569192 -89626240 - PB1D10 SINE Alu -5 112 6 1 1405 219 333 28 28 chr1 107569294 107569365 -89626067 - FAM SINE Alu -77 234 164 1 1405 1215 35 0 0 chr1 107569405 107569550 -89625882 - B1_Mm SINE Alu 0 147 3 1 1405 619 203 71 14 chr1 107569768 107569908 -89625524 + B1_Mus1 SINE Alu 1 148 0 1 1405 818 246 49 25 chr1 107570111 107570315 -89625117 - B3 SINE B2 -6 210 2 1 1405 246 306 13 53 chr1 107570427 107570503 -89624929 + ID2 SINE ID 1 73 -10 1 1405 45 75 0 0 chr1 107570518 107570612 -89624820 + AT_rich Low_complexity Low_complexity 1 94 0 1 1405 5279 210 105 106 chr1 107570714 107572216 -89623216 - Lx7 LINE L1 -375 7321 5783 1 1405 882 148 0 51 chr1 107572216 107572373 -89623059 - B1_Mur3 SINE Alu 0 149 1 1 1405 5279 170 10 72 chr1 107572373 107572863 -89622569 - Lx7 LINE L1 -89 5791 5333 1 1405 254 217 35 24 chr1 107572878 107572963 -89622469 + L1MEf LINE L1 1254 1339 -4861 1 1405 246 227 9 110 chr1 107573043 107573152 -89622280 - L1_Mur1 LINE L1 -563 5323 5226 1 1405 260 238 106 15 chr1 107573210 107573342 -89622090 - L1MEa LINE L1 -4861 1339 1196 1 1405 304 260 42 118 chr1 107573657 107573801 -89621631 - L1MEa LINE L1 -5127 967 835 1 1405 1469 244 31 28 chr1 107573801 107574160 -89621272 - ORR1D2 LTR MaLR -9 361 2 1 1405 485 312 73 78 chr1 107574165 107574548 -89620884 - L1MEa LINE L1 -5296 798 418 1 1405 774 196 249 0 chr1 107575746 107575919 -89619513 + B3 SINE B2 1 216 0 1 1405 328 330 16 78 chr1 107576421 107576549 -89618883 + PB1D7 SINE Alu 1 120 0 1 1405 666 266 23 29 chr1 107576733 107576907 -89618525 - ID_B1 SINE B4 -1 223 51 1 1405 801 245 46 20 chr1 107577264 107577460 -89617972 + B3 SINE B2 1 201 -15 1 1405 617 69 0 11 chr1 107577909 107577997 -89617435 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1 1405 462 289 55 0 chr1 107577999 107578127 -89617305 - ID_B1 SINE B4 -5 219 85 1 1405 685 279 48 103 chr1 107579012 107579304 -89616128 + B4 SINE B4 3 278 -14 1 1405 258 32 0 0 chr1 107579834 107579865 -89615567 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1405 225 0 0 0 chr1 107579871 107579896 -89615536 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1405 821 184 0 7 chr1 107579896 107580033 -89615399 - B1_Mur2 SINE Alu -12 137 2 1 1405 220 200 20 40 chr1 107584367 107584466 -89610966 + T-rich Low_complexity Low_complexity 1 97 0 1 1405 883 169 13 7 chr1 107584472 107584621 -89610811 - B1_Mur4 SINE Alu 0 150 1 1 1405 498 96 0 0 chr1 107584637 107584710 -89610722 + (CATA)n Simple_repeat Simple_repeat 2 74 0 1 1405 331 315 110 44 chr1 107585739 107586174 -89609258 + L1MD LINE L1 4653 5116 -1030 1 1405 626 283 12 25 chr1 107586231 107586394 -89609038 + RSINE1 SINE B4 5 165 0 1 1405 301 232 289 0 chr1 107586412 107586554 -89608878 + B3A SINE B2 1 183 -15 1 1405 185 159 23 0 chr1 107586555 107586599 -89608833 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1405 334 268 68 40 chr1 107586680 107586867 -89608565 + L1MD LINE L1 5256 5446 -2339 1 1405 273 282 13 0 chr1 107587719 107587797 -89607635 - ID4 SINE ID -3 80 2 1 1405 21 0 0 0 chr1 107587815 107587836 -89607596 + AT_rich Low_complexity Low_complexity 1 21 0 1 1405 500 235 79 29 chr1 107587952 107588092 -89607340 - B1_Mur1 SINE Alu -1 148 2 1 1405 600 59 0 0 chr1 107588196 107588281 -89607151 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1405 524 320 0 15 chr1 107588288 107588418 -89607014 - RSINE1 SINE B4 -36 129 2 1 1405 366 377 63 41 chr1 107590716 107590984 -89604448 - L2b LINE L2 -34 3341 3068 1 1405 25 31 0 0 chr1 107591467 107591499 -89603933 + AT_rich Low_complexity Low_complexity 1 32 0 1 1405 23 0 0 0 chr1 107592495 107592518 -89602914 + AT_rich Low_complexity Low_complexity 1 23 0 1 1405 330 223 118 78 chr1 107592548 107592752 -89602680 - L1MA5 LINE L1 -13 6287 6076 1 1405 228 179 30 0 chr1 107593823 107593890 -89601542 - Lx9 LINE L1 -118 7526 7458 1 1405 300 148 0 0 chr1 107594486 107594547 -89600885 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1405 22 0 0 0 chr1 107594566 107594588 -89600844 + AT_rich Low_complexity Low_complexity 1 22 0 1 1405 278 278 0 0 chr1 107594797 107594851 -89600581 + tRNA-Ala-GCY_ tRNA tRNA 19 72 -3 1 1405 522 0 0 0 chr1 107595215 107595273 -89600159 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1 1405 1080 86 0 0 chr1 107595273 107595412 -89600020 - B1_Mus1 SINE Alu -9 139 1 1 1405 492 263 117 26 chr1 107595549 107595642 -89599790 - L1M3 LINE L1 -1233 4913 4825 1 1405 384 22 0 0 chr1 107595642 107595687 -89599745 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1405 492 263 117 26 chr1 107595687 107595866 -89599566 - L1M3 LINE L1 -1322 4824 4616 1 1405 405 285 71 21 chr1 107595879 107595902 -89599530 - B4 SINE B4 -74 218 131 1 1405 686 126 0 10 chr1 107595902 107596006 -89599426 - B1_Mus1 SINE Alu -45 103 1 1 1405 405 285 71 21 chr1 107596006 107596019 -89599413 - B4 SINE B4 -74 130 72 1 1405 763 313 80 34 chr1 107596036 107596837 -89598595 - L1M3 LINE L1 -1702 4438 3601 1 1405 569 222 50 16 chr1 107597064 107597201 -89598231 + B3A SINE B2 1 145 -71 1 1405 330 45 0 0 chr1 107597201 107597245 -89598187 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1405 536 247 74 20 chr1 107597245 107597256 -89598176 + B3 SINE B2 146 156 -60 1 1405 448 239 24 129 chr1 107597345 107597449 -89597983 + ID_B1 SINE B4 2 215 -9 1 1405 840 123 0 44 chr1 107597449 107597585 -89597847 + B1_Mus2 SINE Alu 9 138 -9 1 1405 260 227 184 21 chr1 107597705 107597802 -89597630 + RSINE1 SINE B4 89 275 -17 1 1405 222 62 0 0 chr1 107597855 107597887 -89597545 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1405 288 0 0 0 chr1 107597950 107597982 -89597450 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1405 180 0 0 0 chr1 107598352 107598372 -89597060 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1405 36 40 0 0 chr1 107599252 107599302 -89596130 + AT_rich Low_complexity Low_complexity 1 50 0 1 1405 208 139 0 0 chr1 107601432 107601468 -89593964 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1405 6351 38 0 0 chr1 107601924 107602679 -89592753 + L1Md_T LINE L1 5828 6582 0 1 1405 425 210 185 18 chr1 107602796 107602926 -89592506 + B1F2 SINE Alu 1 149 0 1 1405 22 35 0 0 chr1 107603341 107603370 -89592062 + AT_rich Low_complexity Low_complexity 1 29 0 1 1405 209 127 82 27 chr1 107603385 107603458 -89591974 + (TTTAA)n Simple_repeat Simple_repeat 4 80 0 1 1405 6794 150 37 21 chr1 107603473 107605580 -89589852 - Lx3C LINE L1 -56 6920 4782 1 1405 1108 156 68 50 chr1 107606597 107606819 -89588613 - URR1A DNA MER1_type 0 226 1 1 1405 30 59 0 0 chr1 107608062 107608113 -89587319 + AT_rich Low_complexity Low_complexity 1 51 0 1 1405 477 290 58 64 chr1 107608525 107608598 -89586834 - B4 SINE B4 -4 288 217 1 1405 288 291 0 12 chr1 107608598 107608678 -89586754 - ID4 SINE ID -3 80 2 1 1405 477 290 58 64 chr1 107608678 107608792 -89586640 - B4 SINE B4 -76 216 102 1 1405 468 186 51 10 chr1 107609130 107609225 -89586207 - B1_Mur1 SINE Alu -4 145 47 1 175 3359 183 96 41 chr1 107609225 107610145 -89585287 - RLTR25A LTR ERVK -1 1027 15 1 1406 228 211 58 0 chr1 107610142 107610194 -89585238 - B1_Mus1 SINE Alu -93 55 1 1 1406 306 0 0 0 chr1 107610225 107610259 -89585173 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1406 811 73 0 0 chr1 107610259 107610368 -89585064 - B1_Mm SINE Alu -37 110 2 1 1406 183 310 22 33 chr1 107610673 107610763 -89584669 - L2a LINE L2 0 3426 3338 1 1406 305 212 294 0 chr1 107611529 107611614 -89583818 + PB1D10 SINE Alu 1 110 -7 1 1406 441 278 17 25 chr1 107611639 107611757 -89583675 + B1F SINE Alu 3 119 -30 1 1406 667 263 118 8 chr1 107611920 107612003 -89583429 - L1M4 LINE L1 -1459 4687 4604 1 1406 277 75 0 36 chr1 107612003 107612058 -89583374 + (TTGG)n Simple_repeat Simple_repeat 1 53 0 1 1406 740 144 22 22 chr1 107612058 107612193 -89583239 - B1_Mus1 SINE Alu -13 135 1 2 1406 667 263 118 8 chr1 107612193 107612346 -89583086 - L1M4 LINE L1 -1543 4603 4425 1 1406 764 286 158 51 chr1 107613626 107614240 -89581192 + Charlie1a DNA MER1_type 5 681 -774 2 1406 539 229 25 17 chr1 107614444 107614564 -89580868 - ID_B1 SINE B4 -6 218 98 2 1406 447 338 52 0 chr1 107614564 107614580 -89580852 - B1F2 SINE Alu -6 143 1 2 1406 416 214 86 19 chr1 107614872 107614977 -89580455 - B3A SINE B2 -86 112 1 2 1406 390 284 74 34 chr1 107615045 107615220 -89580212 + B3A SINE B2 1 182 -16 2 1406 1533 21 32 11 chr1 107615616 107615805 -89579627 + B2_Mm1a SINE B2 1 193 0 2 1406 198 0 0 0 chr1 107616950 107616972 -89578460 + (TATATG)n Simple_repeat Simple_repeat 2 23 0 2 1406 567 0 0 0 chr1 107618241 107618304 -89577128 + (CTTG)n Simple_repeat Simple_repeat 1 63 0 2 1406 25 0 0 0 chr1 107618538 107618563 -89576869 + AT_rich Low_complexity Low_complexity 1 25 0 2 1406 317 294 33 0 chr1 107619071 107619163 -89576269 - MLT1B LTR MaLR 0 390 296 2 1406 2372 175 58 37 chr1 107619431 107619948 -89575484 - RLTR11A LTR ERVK 0 528 1 2 1406 220 313 0 15 chr1 107620033 107620045 -89575387 - B4A SINE B4 -143 149 86 2 1406 287 208 0 0 chr1 107620045 107620098 -89575334 - B1_Mus2 SINE Alu -94 53 1 2 1406 482 229 42 0 chr1 107620567 107620663 -89574769 - B1_Mus2 SINE Alu -43 104 5 2 1406 663 316 20 0 chr1 107621316 107621468 -89573964 + RSINE1 SINE B4 10 164 -1 2 1406 24 0 0 0 chr1 107621497 107621521 -89573911 + AT_rich Low_complexity Low_complexity 1 24 0 2 1406 2210 151 56 20 chr1 107625389 107625781 -89569651 - MTB_Mm LTR MaLR -1 406 1 2 1406 1539 138 11 84 chr1 107625935 107626282 -89569150 + RLTRETN_Mm LTR ERVK 1 322 0 2 1406 1395 75 21 0 chr1 107626659 107626847 -89568585 - B2_Mm1t SINE B2 0 193 2 2 1406 1273 102 11 0 chr1 107627202 107627379 -89568053 + B2_Mm1t SINE B2 1 179 -14 2 1406 425 82 307 0 chr1 107627391 107627501 -89567931 + B2_Mm2 SINE B2 46 194 -1 2 1406 25 0 0 0 chr1 107627751 107627776 -89567656 + AT_rich Low_complexity Low_complexity 1 25 0 2 1406 1483 72 0 15 chr1 107629056 107629254 -89566178 - B2_Mm2 SINE B2 0 195 1 2 1406 247 192 19 0 chr1 107629708 107629760 -89565672 + ID4_ SINE ID 1 53 -30 2 1406 1324 234 117 23 chr1 107629960 107630330 -89565102 - MTD LTR MaLR -14 405 16 2 1406 27 0 0 0 chr1 107630699 107630726 -89564706 + AT_rich Low_complexity Low_complexity 1 27 0 2 1406 305 184 125 11 chr1 107630828 107630916 -89564516 + MER3 DNA MER1_type 108 205 -4 2 1406 345 349 114 0 chr1 107631254 107631403 -89564029 + HAL1 LINE L1 1737 1902 -605 2 1406 235 339 0 0 chr1 107631845 107631904 -89563528 - tRNA-Ala-GCY_ tRNA tRNA -7 68 10 2 1406 277 296 35 43 chr1 107631919 107632060 -89563372 - B1F SINE Alu 0 149 10 2 1406 353 292 32 48 chr1 107633209 107633335 -89562097 + MIR SINE MIR 30 153 -109 2 1406 195 39 0 0 chr1 107633367 107633388 -89562044 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1406 1137 74 0 7 chr1 107633388 107633537 -89561895 - B1_Mus1 SINE Alu 0 148 1 2 1406 185 220 98 20 chr1 107633560 107633611 -89561821 + MIR SINE MIR 202 256 -6 2 1406 268 310 40 62 chr1 107633716 107633943 -89561489 - Lx7 LINE L1 -16 7680 7459 2 1406 561 219 0 31 chr1 107633985 107634112 -89561320 - Lx7 LINE L1 -418 7278 7156 2 1406 502 272 146 12 chr1 107634656 107634827 -89560605 + ID_B1 SINE B4 28 221 -3 2 1406 735 118 36 0 chr1 107635845 107635955 -89559477 - B2_Mm1t SINE B2 -78 115 2 2 1406 307 241 79 22 chr1 107636153 107636242 -89559190 - MIR SINE MIR -120 142 49 2 1406 205 86 29 0 chr1 107636531 107636566 -89558866 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1406 790 157 82 0 chr1 107636568 107636702 -89558730 + B1_Mur2 SINE Alu 1 145 -4 2 1406 637 288 0 0 chr1 107638202 107638341 -89557091 - B1_Mur1 SINE Alu -9 140 2 2 1406 933 184 119 16 chr1 107638634 107638798 -89556634 + B3 SINE B2 1 186 -30 2 1406 324 0 0 0 chr1 107638798 107638834 -89556598 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1406 285 98 0 0 chr1 107638834 107638875 -89556557 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2 1406 933 184 119 16 chr1 107638875 107638902 -89556530 + B3 SINE B2 187 212 -4 2 1406 1137 114 40 0 chr1 107639443 107639618 -89555814 + B2_Mm1t SINE B2 3 184 -9 2 1406 181 290 101 0 chr1 107640174 107640243 -89555189 + L2 LINE L2 737 812 -2607 2 1406 180 77 0 0 chr1 107641636 107641662 -89553770 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1406 814 261 38 16 chr1 107641662 107641845 -89553587 - B3 SINE B2 -29 187 1 2 1406 218 274 32 0 chr1 107641995 107642057 -89553375 - B1F SINE Alu -63 86 23 2 1406 25 31 0 0 chr1 107642114 107642146 -89553286 + AT_rich Low_complexity Low_complexity 1 32 0 2 1406 24 0 0 0 chr1 107642933 107642957 -89552475 + AT_rich Low_complexity Low_complexity 1 24 0 2 1406 281 336 118 31 chr1 107643830 107644119 -89551313 + L3 LINE CR1 2031 2344 -2145 2 1406 183 307 56 65 chr1 107644510 107644618 -89550814 + L3 LINE CR1 4043 4149 -340 2 1406 187 295 91 45 chr1 107644765 107644875 -89550557 + L3 LINE CR1 4260 4374 -115 2 1406 507 285 13 44 chr1 107645188 107645346 -89550086 - RSINE1 SINE B4 -12 153 1 2 1406 903 240 30 5 chr1 107645758 107645959 -89549473 + B3 SINE B2 3 208 -8 2 1406 307 297 243 27 chr1 107645995 107646297 -89549135 - Tigger13a DNA MER2_type -97 674 308 2 1406 351 289 212 18 chr1 107646298 107646526 -89548906 - B4 SINE B4 0 292 2 2 1406 21 57 0 0 chr1 107646599 107646634 -89548798 + AT_rich Low_complexity Low_complexity 1 35 0 2 1406 717 164 104 7 chr1 107647739 107647874 -89547558 + B1_Mur2 SINE Alu 1 148 -1 2 1406 508 345 21 7 chr1 107648070 107648210 -89547222 - RSINE1 SINE B4 -22 143 2 2 1406 280 301 86 0 chr1 107649233 107649326 -89546106 + MIR SINE MIR 106 206 -56 2 1406 213 108 0 0 chr1 107649434 107649471 -89545961 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1406 275 244 34 114 chr1 107649546 107649634 -89545798 + B4 SINE B4 166 246 -46 2 1406 259 184 435 0 chr1 107649934 107650028 -89545404 + RSINE1 SINE B4 3 137 -28 2 1406 21 0 0 0 chr1 107650455 107650476 -89544956 + AT_rich Low_complexity Low_complexity 1 21 0 2 1406 296 258 50 30 chr1 107652036 107652136 -89543296 - MER2 DNA MER2_type -118 227 126 2 1406 234 128 0 0 chr1 107652251 107652290 -89543142 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 1406 277 324 19 19 chr1 107652356 107652463 -89542969 - Lx8 LINE L1 -138 7335 7229 2 1406 1370 189 78 22 chr1 107653477 107653923 -89541509 + RMER4B LTR ERVK 1 466 0 2 1406 290 351 167 4 chr1 107654109 107654378 -89541054 - L2 LINE L2 -1810 1609 1297 2 1406 647 253 106 7 chr1 107655176 107655327 -89540105 + B3 SINE B2 1 166 -50 2 1406 2044 157 85 24 chr1 107655338 107655749 -89539683 - RMER10A LTR ERVL -6 436 1 2 1406 30 59 0 0 chr1 107655783 107655834 -89539598 + AT_rich Low_complexity Low_complexity 1 51 0 2 1406 406 272 157 49 chr1 107655853 107656158 -89539274 - HAL1 LINE L1 -1330 1177 840 2 1406 620 162 0 0 chr1 107656159 107656264 -89539168 + RMER1A Other Other 920 1024 -6 2 1406 479 296 85 10 chr1 107656309 107656571 -89538861 + LTR40a LTR ERVL 1 237 -282 2 1406 967 162 126 43 chr1 107656775 107656982 -89538450 - URR1B DNA MER1_type -1 224 1 2 1406 434 135 55 22 chr1 107657394 107657485 -89537947 + RLTR10D LTR ERVK 266 359 0 2 1406 421 179 36 74 chr1 107657527 107657694 -89537738 + IAP-d-int LTR ERVK 26 159 -6383 2 1406 938 236 21 21 chr1 107657730 107657972 -89537460 + IAP-d-int LTR ERVK 3187 3428 -3114 2 1406 2098 255 16 14 chr1 107657965 107658533 -89536899 + IAP-d-int LTR ERVK 4608 5176 -1366 2 1406 2384 216 12 24 chr1 107658521 107659114 -89536318 + IAP-d-int LTR ERVK 5474 6059 -483 2 1406 2129 151 16 14 chr1 107659168 107659531 -89535901 + IAP-d-int LTR ERVK 6179 6542 0 2 1406 1283 194 65 43 chr1 107659531 107659882 -89535550 + RLTR10D LTR ERVK 1 359 0 2 1406 1235 108 278 4 chr1 107659890 107660142 -89535290 + ORR1A4 LTR MaLR 1 321 -8 2 1406 360 250 14 0 chr1 107660151 107660223 -89535209 + B1_Mur1 SINE Alu 67 139 -10 2 1406 427 269 29 29 chr1 107660546 107660684 -89534748 + L1M5 LINE L1 2697 2834 -3312 2 1406 426 219 122 19 chr1 107660696 107660803 -89534629 + PB1D9 SINE Alu 2 119 -1 2 1406 186 43 0 0 chr1 107663166 107663189 -89532243 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1406 352 303 60 27 chr1 107663215 107663364 -89532068 + L1M5 LINE L1 2899 3052 -3094 2 1406 572 282 83 64 chr1 107663388 107663797 -89531635 + L1M5 LINE L1 3138 3554 -2592 2 1406 331 293 167 27 chr1 107663919 107664182 -89531250 + L1M5 LINE L1 3756 4055 -2091 2 1406 795 301 19 10 chr1 107664200 107664408 -89531024 + B4 SINE B4 3 212 -80 2 1406 491 190 50 0 chr1 107664518 107664618 -89530814 - B1_Mur4 SINE Alu -5 145 41 2 1406 288 176 0 0 chr1 107664623 107664691 -89530741 + CT-rich Low_complexity Low_complexity 2 69 0 2 1406 324 163 26 29 chr1 107664691 107664793 -89530639 - B1_Mur2 SINE Alu -20 100 1 2 1406 189 0 0 0 chr1 107664918 107664939 -89530493 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 2 1406 754 188 6 45 chr1 107665462 107665618 -89529814 + B1_Mur4 SINE Alu 1 150 0 2 1406 1489 39 16 6 chr1 107665717 107665900 -89529532 + B2_Mm2 SINE B2 2 186 -9 2 1406 23 0 0 0 chr1 107665942 107665965 -89529467 + AT_rich Low_complexity Low_complexity 1 23 0 2 1406 378 258 32 0 chr1 107666028 107666121 -89529311 - B1F1 SINE Alu -51 98 3 2 1406 257 284 142 0 chr1 107666288 107666422 -89529010 + L1M5 LINE L1 4600 4752 -1394 2 1406 2217 153 19 19 chr1 107666643 107667010 -89528422 - ORR1B2 LTR MaLR 0 367 1 2 1406 7251 166 67 14 chr1 107667013 107668443 -89526989 - ORR1B2-int LTR MaLR -3 1506 1 2 1406 1967 134 94 3 chr1 107668447 107668776 -89526656 - ORR1B2 LTR MaLR -8 359 1 2 1406 384 254 47 36 chr1 107668841 107669033 -89526399 + L1M5 LINE L1 5180 5373 -773 2 1406 319 323 85 45 chr1 107669072 107669273 -89526159 + L1MC LINE L1 5436 5644 -2141 2 1406 311 292 113 46 chr1 107669544 107669695 -89525737 + RSINE1 SINE B4 3 163 -2 2 1406 540 258 112 36 chr1 107669755 107670004 -89525428 + B4A SINE B4 3 270 -22 2 1406 184 72 47 23 chr1 107670531 107670574 -89524858 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1406 6162 136 15 4 chr1 107670589 107671523 -89523909 - Lx4A LINE L1 -445 6613 5670 2 1406 2895 123 9 2 chr1 107671523 107671946 -89523486 + Lx4A LINE L1 6633 7058 0 2 1406 827 247 0 7 chr1 107672424 107672579 -89522853 - B3A SINE B2 -42 156 3 2 1406 715 201 14 14 chr1 107672742 107672883 -89522549 + B1_Mur1 SINE Alu 2 142 -7 2 1406 30 59 0 0 chr1 107672939 107672990 -89522442 + AT_rich Low_complexity Low_complexity 1 51 0 2 1406 247 232 122 31 chr1 107673454 107673552 -89521880 + PB1D7 SINE Alu 1 107 -13 3 1406 252 287 56 98 chr1 107674119 107674262 -89521170 + MT2B LTR ERVL 103 239 -362 3 1406 507 317 14 0 chr1 107674183 107674325 -89521107 + B1F1 SINE Alu 5 148 -1 3 1406 665 274 3 39 chr1 107674331 107674550 -89520882 + B3A SINE B2 2 213 -3 3 1406 322 306 147 55 chr1 107674593 107674701 -89520731 + Tigger5 DNA MER2_type 1 118 -2288 3 1406 648 38 0 0 chr1 107674701 107674780 -89520652 + (TCC)n Simple_repeat Simple_repeat 3 81 0 3 1406 322 306 147 55 chr1 107674780 107674889 -89520543 + Tigger5 DNA MER2_type 119 238 -2168 3 1406 586 259 54 27 chr1 107675579 107675726 -89519706 + B4A SINE B4 132 282 -10 3 1406 351 44 0 0 chr1 107675729 107675774 -89519658 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1406 386 263 129 39 chr1 107676167 107676439 -89518993 + L1M5 LINE L1 2281 2574 -3572 3 1406 246 185 48 24 chr1 107677196 107677279 -89518153 + (CGGGG)n Simple_repeat Simple_repeat 3 87 0 3 1406 32 81 0 0 chr1 107677297 107677371 -89518061 + GC_rich Low_complexity Low_complexity 1 74 0 3 1406 282 29 0 0 chr1 107678912 107678947 -89516485 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1406 352 309 129 22 chr1 107679258 107679397 -89516035 - MER2 DNA MER2_type -191 154 1 3 1406 318 132 0 0 chr1 107679500 107679553 -89515879 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1406 1189 176 13 13 chr1 107679595 107679819 -89515613 + URR1A DNA MER1_type 3 226 0 3 1406 316 324 26 26 chr1 107679821 107679935 -89515497 - RSINE1 SINE B4 -44 121 8 3 1406 1236 54 0 0 chr1 107680366 107680513 -89514919 + B1_Mus2 SINE Alu 1 147 0 3 1406 225 0 0 0 chr1 107680513 107680538 -89514894 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 3 1406 431 0 134 0 chr1 107680649 107680768 -89514664 + (GGGA)n Simple_repeat Simple_repeat 3 137 0 3 1406 247 175 34 34 chr1 107682101 107682160 -89513272 + C-rich Low_complexity Low_complexity 1 59 0 3 1406 192 77 0 0 chr1 107683562 107683588 -89511844 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1406 453 263 108 52 chr1 107683969 107684238 -89511194 - B4A SINE B4 -8 284 1 3 1406 1334 193 205 15 chr1 107684867 107685209 -89510223 - MTD LTR MaLR -12 407 1 3 1406 252 342 0 0 chr1 107685687 107685766 -89509666 - MIR SINE MIR -128 134 56 3 1406 592 230 124 7 chr1 107685897 107686050 -89509382 + B4A SINE B4 49 219 -73 3 1406 619 327 26 30 chr1 107686060 107686331 -89509101 + B4A SINE B4 1 270 -22 3 1406 1116 75 0 26 chr1 107686447 107686598 -89508834 + B1_Mm SINE Alu 1 147 0 3 1406 360 43 0 0 chr1 107687065 107687111 -89508321 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1406 264 246 171 66 chr1 107687449 107687601 -89507831 + MTE2b LTR MaLR 206 373 -6 3 1406 7818 60 15 0 chr1 107688001 107689158 -89506274 - L1_Mus1 LINE L1 0 6567 5394 3 1406 217 218 0 0 chr1 107689769 107689815 -89505617 + MIRm SINE MIR 211 257 -19 3 1406 2086 109 50 37 chr1 107689857 107690180 -89505252 - ORR1A2 LTR MaLR 0 327 1 3 1406 1141 149 4 119 chr1 107690220 107690471 -89504961 + URR1A DNA MER1_type 5 226 0 3 1406 250 309 44 0 chr1 107691022 107691090 -89504342 + MER5A1 DNA MER1_type 59 129 -37 3 1406 1811 169 70 28 chr1 107691813 107692172 -89503260 - ORR1D1 LTR MaLR 0 374 1 3 1406 181 226 18 36 chr1 107692181 107692236 -89503196 + MIR SINE MIR 87 140 -122 3 1406 1461 232 185 8 chr1 107692728 107693220 -89502212 + MTD-int LTR MaLR 676 1254 -4 3 1406 963 234 201 50 chr1 107693224 107693588 -89501844 + MTD LTR MaLR 1 419 0 3 1406 548 292 184 34 chr1 107693588 107693996 -89501436 + L1MB5 LINE L1 5452 5920 -254 3 1406 316 283 53 5 chr1 107694011 107694185 -89501247 + L1MB5 LINE L1 5981 6156 -24 3 1406 213 190 0 33 chr1 107695355 107695415 -89500017 + A-rich Low_complexity Low_complexity 2 59 0 3 1406 282 237 13 38 chr1 107695841 107695920 -89499512 - ID4_ SINE ID -5 78 2 3 1406 443 219 9 54 chr1 107697399 107697465 -89497967 + B1_Mur4 SINE Alu 24 90 -60 3 1406 1557 157 126 74 chr1 107697465 107697885 -89497547 - RMER10A LTR ERVL 0 442 1 3 1406 443 219 9 54 chr1 107697885 107697929 -89497503 + B1_Mur4 SINE Alu 91 129 -21 3 1406 216 86 0 0 chr1 107698382 107698417 -89497015 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1406 185 0 40 0 chr1 107698794 107698819 -89496613 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1406 270 0 0 0 chr1 107698876 107698906 -89496526 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1406 464 219 95 0 chr1 107698919 107699024 -89496408 - RSINE1 SINE B4 -48 117 3 3 1406 494 103 0 13 chr1 107699157 107699236 -89496196 + (GAAAA)n Simple_repeat Simple_repeat 4 81 0 3 1406 581 271 8 0 chr1 107700356 107700489 -89494943 + B1_Mur3 SINE Alu 1 134 -15 3 1406 510 325 23 75 chr1 107701721 107701987 -89493445 - Lx8 LINE L1 0 7473 7222 3 1406 720 156 85 43 chr1 107701995 107702136 -89493296 + B1_Mur3 SINE Alu 3 149 0 3 1406 413 125 0 11 chr1 107702140 107702229 -89493203 + (CAAA)n Simple_repeat Simple_repeat 2 89 0 3 1406 1609 274 99 14 chr1 107702239 107702754 -89492678 - Lx8 LINE L1 -239 7234 6676 3 1406 386 248 233 35 chr1 107703065 107703323 -89492109 - MTEb LTR MaLR 0 379 70 3 1406 1248 238 149 43 chr1 107703626 107704142 -89491290 + RMER13A LTR ERVK 2 635 -273 3 1406 238 179 35 35 chr1 107704556 107704614 -89490818 - RSINE1 SINE B4 -31 134 77 3 1406 1311 58 58 0 chr1 107705204 107705375 -89490057 + B2_Mm1a SINE B2 5 185 -8 3 1406 369 43 0 0 chr1 107705375 107705422 -89490010 + (GGA)n Simple_repeat Simple_repeat 3 49 0 3 1406 206 301 148 8 chr1 107706258 107706372 -89489060 - MIRb SINE MIR -69 199 73 3 1406 580 271 7 0 chr1 107706490 107706630 -89488802 - B1F SINE Alu -8 141 1 3 1406 207 69 0 0 chr1 107706635 107706664 -89488768 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 1406 365 291 114 67 chr1 107706774 107706984 -89488448 - L1MC5 LINE L1 -533 7428 7209 3 1406 227 238 48 0 chr1 107707010 107707073 -89488359 - ID4 SINE ID -16 67 2 3 1406 257 268 33 43 chr1 107707071 107707190 -89488242 - B1F2 SINE Alu 0 117 1 3 1406 574 299 26 42 chr1 107708171 107708210 -89487222 - B3A SINE B2 -7 191 154 3 1406 207 0 0 0 chr1 107708210 107708233 -89487199 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1406 574 299 26 42 chr1 107708233 107708315 -89487117 - B3A SINE B2 -45 153 75 3 1406 2575 140 130 8 chr1 107708315 107708553 -89486879 - RLTR11A2 LTR ERVK -2 525 231 3 1406 1257 77 0 0 chr1 107708553 107708723 -89486709 + (TCTCC)n Simple_repeat Simple_repeat 5 174 0 3 1406 2575 140 130 8 chr1 107708723 107708952 -89486480 - RLTR11A2 LTR ERVK -297 230 2 3 1406 574 299 26 42 chr1 107708952 107709021 -89486411 - B3A SINE B2 -124 74 4 3 1406 726 268 168 58 chr1 107709072 107709436 -89485996 + MER82 DNA MER2_type 2 405 -248 3 1406 313 40 19 39 chr1 107709872 107709924 -89485508 + (GAAAA)n Simple_repeat Simple_repeat 5 55 0 3 1406 21 36 0 0 chr1 107710760 107710788 -89484644 + AT_rich Low_complexity Low_complexity 1 28 0 3 1406 769 296 81 36 chr1 107711263 107711596 -89483836 - Charlie2a DNA MER1_type -808 2053 1706 3 1406 1797 179 29 67 chr1 107711839 107712289 -89483143 - RMER10A LTR ERVL -9 433 1 3 1406 915 209 29 34 chr1 107712339 107712547 -89482885 + ID_B1 SINE B4 1 207 -17 3 1406 315 159 16 16 chr1 107712864 107712928 -89482504 - B3A SINE B2 -88 110 47 3 1406 270 313 143 12 chr1 107713427 107713511 -89481921 + MER58A DNA MER1_type 70 164 -60 3 1406 1110 186 160 52 chr1 107714369 107714551 -89480881 - RMER17C LTR ERVK -1 409 176 3 1406 486 0 0 0 chr1 107714551 107714605 -89480827 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1406 1110 186 160 52 chr1 107714605 107714791 -89480641 - RMER17C LTR ERVK -235 175 1 3 1406 1034 227 10 0 chr1 107716748 107716955 -89478477 - B3 SINE B2 -4 212 4 3 1406 536 197 33 7 chr1 107716969 107717122 -89478310 + CT-rich Low_complexity Low_complexity 4 160 0 3 1406 249 182 20 10 chr1 107717288 107717388 -89478044 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1406 690 216 25 20 chr1 107718293 107718466 -89476966 + B3 SINE B2 6 174 -21 3 1406 375 298 33 66 chr1 107718480 107718602 -89476830 - RSINE1 SINE B4 0 165 48 3 1406 22 0 0 0 chr1 107719086 107719108 -89476324 + AT_rich Low_complexity Low_complexity 1 22 0 3 1406 334 292 18 45 chr1 107719124 107719235 -89476197 - RSINE1 SINE B4 -4 161 54 3 1406 371 243 0 0 chr1 107719313 107719387 -89476045 + ID4 SINE ID 2 75 -8 3 1406 330 26 0 0 chr1 107719418 107719457 -89475975 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1406 529 321 5 71 chr1 107719668 107719879 -89475553 + B4A SINE B4 96 292 0 3 1406 248 137 20 0 chr1 107719922 107719973 -89475459 + (CATA)n Simple_repeat Simple_repeat 1 52 0 3 1406 1698 228 18 102 chr1 107720229 107720473 -89474959 - MTD LTR MaLR 0 419 211 3 1406 997 193 83 0 chr1 107720473 107720665 -89474767 - B3 SINE B2 -8 208 1 3 1406 1698 216 36 87 chr1 107720665 107720877 -89474555 - MTD LTR MaLR -209 210 1 3 1406 225 232 16 82 chr1 107720988 107721049 -89474383 - tRNA-Gly-GGG tRNA tRNA -10 64 8 3 1406 218 227 91 0 chr1 107721074 107721140 -89474292 - ID2 SINE ID -11 72 1 3 1406 334 299 41 14 chr1 107721223 107721369 -89474063 + L1MA9 LINE L1 5937 6086 -226 3 1406 27 0 0 0 chr1 107721503 107721530 -89473902 + AT_rich Low_complexity Low_complexity 1 27 0 3 1406 530 240 0 97 chr1 107722251 107722385 -89473047 + B3A SINE B2 3 123 -75 3 1406 324 0 0 0 chr1 107722400 107722436 -89472996 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1406 183 80 0 0 chr1 107722503 107722528 -89472904 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1406 773 252 50 0 chr1 107722549 107722751 -89472681 + ID_B1 SINE B4 5 216 -8 3 1406 1569 42 0 30 chr1 107722863 107723061 -89472371 - B2_Mm1a SINE B2 0 193 2 3 1406 237 284 36 24 chr1 107724429 107724512 -89470920 - PB1D10 SINE Alu -15 102 19 3 1406 402 264 37 86 chr1 107724440 107724602 -89470830 - ID_B1 SINE B4 -55 169 16 3 1406 279 190 0 0 chr1 107725373 107725431 -89470001 + GA-rich Low_complexity Low_complexity 4 61 0 4 1406 216 305 0 0 chr1 107725676 107725735 -89469697 + GA-rich Low_complexity Low_complexity 2 60 0 4 1406 474 295 50 7 chr1 107726266 107726406 -89469026 - RSINE1 SINE B4 -4 161 16 4 1406 709 182 175 6 chr1 107726667 107726833 -89468599 - ORR1D1 LTR MaLR 0 384 191 4 1406 330 26 0 0 chr1 107726833 107726872 -89468560 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1406 583 216 339 45 chr1 107726872 107727016 -89468416 - ORR1D1 LTR MaLR -219 175 1 4 1406 5162 213 77 29 chr1 107727016 107728321 -89467111 - ORR1D1-int LTR MaLR 0 1370 4 4 1406 1171 167 100 36 chr1 107728325 107728604 -89466828 - ORR1D1 LTR MaLR -1 373 77 4 1406 1455 90 0 5 chr1 107728841 107729031 -89466401 + B2_Mm2 SINE B2 2 190 -5 4 1406 322 226 60 0 chr1 107729070 107729154 -89466278 + B4A SINE B4 3 91 -201 4 1406 185 94 0 30 chr1 107729276 107729309 -89466123 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 4 1406 22 56 0 0 chr1 107729317 107729353 -89466079 + AT_rich Low_complexity Low_complexity 1 36 0 4 1406 38942 40 0 3 chr1 107729946 107736196 -89459236 - L1Md_T LINE L1 0 6585 256 4 1406 510 289 30 0 chr1 107736427 107736562 -89458870 + B4A SINE B4 1 139 -153 4 1406 191 36 36 0 chr1 107736562 107736590 -89458842 + (CAGC)n Simple_repeat Simple_repeat 3 31 0 4 1406 779 267 62 52 chr1 107736966 107737254 -89458178 + B4A SINE B4 1 291 -1 4 1406 348 24 0 0 chr1 107737309 107737350 -89458082 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1406 234 213 0 218 chr1 107737899 107737977 -89457455 + B1F2 SINE Alu 1 61 -88 4 1406 407 292 0 0 chr1 107737932 107738028 -89457404 + ID_B1 SINE B4 98 193 -31 4 1406 243 0 0 0 chr1 107738426 107738453 -89456979 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1406 260 111 22 0 chr1 107738566 107738611 -89456821 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1406 956 74 0 0 chr1 107738629 107738750 -89456682 - L1Md_F2 LINE L1 -364 6218 6098 4 1406 2457 25 11 0 chr1 107738751 107739032 -89456400 + L1Md_F2 LINE L1 5589 5872 -710 4 1406 206 233 0 16 chr1 107739779 107739840 -89455592 + G-rich Low_complexity Low_complexity 3 62 0 4 1406 292 250 0 77 chr1 107740712 107740829 -89454603 + CT-rich Low_complexity Low_complexity 1 108 0 4 1407 510 31 0 0 chr1 107741718 107741782 -89453650 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1407 351 0 0 0 chr1 107741782 107741820 -89453612 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1407 1044 113 0 4 chr1 107742285 107742506 -89452926 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 1407 274 291 12 12 chr1 107742563 107742643 -89452789 + B3A SINE B2 48 127 -71 4 1407 324 0 0 0 chr1 107742645 107742681 -89452751 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1407 3660 154 32 58 chr1 107742874 107743570 -89451862 - RLTR33 LTR ERVK 0 678 1 4 1407 729 188 0 69 chr1 107744599 107744759 -89450673 + B1_Mur2 SINE Alu 1 149 0 4 1407 699 238 53 37 chr1 107744890 107745078 -89450354 + B3A SINE B2 2 192 -6 4 1407 388 296 163 35 chr1 107745269 107745728 -89449704 - MLT1H LTR MaLR -16 533 16 4 1407 317 272 48 10 chr1 107746171 107746275 -89449157 - B4 SINE B4 -14 278 171 4 1407 308 270 36 11 chr1 107746300 107746394 -89449038 - B4 SINE B4 -194 98 2 4 1407 291 0 0 0 chr1 107746597 107746632 -89448800 + U2 snRNA snRNA 1 35 -153 4 1407 459 241 108 14 chr1 107747970 107748109 -89447323 + B4 SINE B4 26 177 -115 4 1407 319 241 139 0 chr1 107748276 107748384 -89447048 - Lx7 LINE L1 -811 6885 6763 4 1407 229 62 47 70 chr1 107748384 107748470 -89446962 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 4 1407 200 164 35 71 chr1 107748483 107748568 -89446864 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 4 1407 4423 232 63 40 chr1 107748575 107749482 -89445950 - Lx7 LINE L1 -948 6748 5796 4 1407 501 17 0 0 chr1 107749482 107749540 -89445892 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 4 1407 1171 68 0 0 chr1 107749540 107749686 -89445746 - B1_Mm SINE Alu -1 146 1 4 1407 4423 257 36 69 chr1 107749686 107750239 -89445193 - Lx7 LINE L1 -1901 5795 5271 4 1407 243 103 0 0 chr1 107750239 107750278 -89445154 + (TTG)n Simple_repeat Simple_repeat 1 39 0 4 1407 4100 204 20 18 chr1 107750278 107751214 -89444218 - Lx7 LINE L1 -616 5270 4408 4 1407 10015 158 95 15 chr1 107751215 107753304 -89442128 + Lx5 LINE L1 2871 5127 -750 4 1407 2729 136 54 11 chr1 107753372 107753468 -89441964 - RLTR20B2 LTR ERVK 0 560 467 4 1407 333 0 0 0 chr1 107753468 107753505 -89441927 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1407 2729 136 54 11 chr1 107753505 107753945 -89441487 - RLTR20B2 LTR ERVK -94 466 2 4 1407 910 169 215 27 chr1 107753945 107754164 -89441268 + Lx5 LINE L1 5183 5442 -438 4 1407 3425 222 64 94 chr1 107754161 107755152 -89440280 + Lx5 LINE L1 5667 6627 -423 4 1407 199 293 17 0 chr1 107755966 107756024 -89439408 + L2c LINE L2 3329 3387 0 4 1407 2113 110 6 0 chr1 107756167 107756484 -89438948 - ORR1A2 LTR MaLR -8 319 1 4 1407 8267 48 4 1 chr1 107756842 107757948 -89437484 - L1Md_F2 LINE L1 -4 6578 5468 4 1407 261 57 0 0 chr1 107758040 107758075 -89437357 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1407 438 147 53 0 chr1 107758406 107758481 -89436951 + MTC LTR MaLR 1 79 -342 4 1407 1667 57 0 0 chr1 107758481 107758693 -89436739 - L1Md_F2 LINE L1 -601 5983 5772 4 1407 5156 33 3 3 chr1 107758693 107759302 -89436130 + L1Md_F2 LINE L1 5974 6582 0 4 1407 1630 178 65 21 chr1 107759393 107759732 -89435700 + MTC LTR MaLR 68 421 0 4 1407 1177 75 0 0 chr1 107760081 107760228 -89435204 - B1_Mus2 SINE Alu 0 147 1 4 1407 865 164 14 14 chr1 107760568 107760716 -89434716 - B1_Mur1 SINE Alu -1 148 1 4 1407 486 311 129 12 chr1 107760785 107761127 -89434305 - L1ME1 LINE L1 0 6179 5798 4 1407 420 325 65 30 chr1 107762596 107762764 -89432668 + B4A SINE B4 1 174 -118 4 1407 217 356 83 8 chr1 107763051 107763184 -89432248 - MIRb SINE MIR -123 145 3 4 1407 903 288 36 14 chr1 107763637 107763915 -89431517 + B4A SINE B4 1 284 -8 4 1407 1368 58 0 0 chr1 107764073 107764419 -89431013 + (TG)n Simple_repeat Simple_repeat 1 346 0 4 1407 1129 279 56 31 chr1 107764708 107765153 -89430279 - MLT1D LTR MaLR -8 497 42 4 1407 501 252 10 0 chr1 107765201 107765304 -89430128 + RSINE1 SINE B4 4 107 -58 4 1407 186 43 0 0 chr1 107765318 107765341 -89430091 + (CATG)n Simple_repeat Simple_repeat 3 25 0 4 1407 1832 233 106 6 chr1 107766862 107767325 -89428107 - Lx6 LINE L1 -31 7429 6564 4 1407 739 179 27 14 chr1 107767367 107767514 -89427918 - B1_Mur3 SINE Alu 0 149 1 4 1407 331 338 90 0 chr1 107767655 107767788 -89427644 - B1F1 SINE Alu -1 148 4 4 1407 1258 134 5 5 chr1 107768297 107768492 -89426940 + B2_Mm2 SINE B2 1 195 0 4 1407 1448 211 56 53 chr1 107768576 107768952 -89426480 - MTEb LTR MaLR 0 379 3 4 1407 910 104 79 29 chr1 107769373 107769512 -89425920 + B1_Mus1 SINE Alu 3 148 0 4 1407 307 103 34 17 chr1 107769686 107769734 -89425698 + B1_Mur4 SINE Alu 91 140 -10 4 1407 233 0 62 0 chr1 107769734 107769766 -89425666 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1407 264 261 63 87 chr1 107770041 107770122 -89425310 - L1MC5 LINE L1 -833 7128 7050 4 1407 3272 41 5 10 chr1 107770122 107770520 -89424912 - MTA_Mm LTR MaLR 0 396 1 4 1407 8112 69 5 68 chr1 107770520 107771692 -89423740 - MTA_Mm-int LTR MaLR 0 1098 1 4 1407 3314 43 2 8 chr1 107771692 107772088 -89423344 - MTA_Mm LTR MaLR 0 396 3 4 1407 264 261 63 87 chr1 107772088 107772130 -89423302 - L1MC5 LINE L1 -912 7049 7008 4 1407 879 245 28 14 chr1 107772241 107772452 -89422980 - B3 SINE B2 0 216 3 4 1407 476 284 111 38 chr1 107772513 107772768 -89422664 - L1MC5 LINE L1 -1049 6946 6625 4 1407 307 297 232 17 chr1 107773321 107773554 -89421878 - L1MC5 LINE L1 -2190 5692 5410 4 1407 701 308 31 53 chr1 107774200 107774549 -89420883 + RLTR17 LTR ERVK 60 426 -266 4 1407 364 71 0 0 chr1 107774804 107774860 -89420572 + Lx LINE L1 6592 6647 -7 4 1407 387 309 80 37 chr1 107775377 107775676 -89419756 - L1MB8 LINE L1 -100 6084 5773 4 1407 209 83 28 0 chr1 107775804 107775840 -89419592 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1407 531 296 20 39 chr1 107775943 107776147 -89419285 - B3A SINE B2 -13 203 4 4 1407 360 310 118 11 chr1 107776147 107776332 -89419100 - B4A SINE B4 -64 228 24 4 1407 1989 124 39 51 chr1 107776470 107776885 -89418547 + RMER17C LTR ERVK 1 410 0 4 1407 1079 161 215 49 chr1 107776887 107777194 -89418238 + RMER17C-int LTR ERVK 2 359 -2879 4 1407 231 204 0 0 chr1 107777444 107777498 -89417934 + CT-rich Low_complexity Low_complexity 2 55 0 4 1407 1425 191 182 45 chr1 107778480 107778925 -89416507 + RMER17C-int LTR ERVK 1485 1990 -1248 4 1407 510 160 40 0 chr1 107778954 107779054 -89416378 + RMER17C-int LTR ERVK 2239 2342 -896 4 1407 1025 102 321 33 chr1 107779052 107779323 -89416109 + RMER17C-int LTR ERVK 2533 2881 -357 4 1407 1874 133 49 8 chr1 107779336 107779721 -89415711 - RMER17C LTR ERVK -9 401 1 4 1407 585 306 79 14 chr1 107781226 107781505 -89413927 + MER82 DNA MER2_type 49 345 -308 4 1407 393 39 0 0 chr1 107781741 107781792 -89413640 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1407 1884 206 27 12 chr1 107782437 107782850 -89412582 + MTC LTR MaLR 1 419 -2 4 1407 1248 248 75 58 chr1 107782929 107783764 -89411668 + RMER17A2 LTR ERVK 1 726 -182 4 1407 481 229 92 23 chr1 107783803 107783977 -89411455 + RMER17A2 LTR ERVK 716 901 -7 4 1407 213 239 0 21 chr1 107783996 107784043 -89411389 + B4 SINE B4 30 75 -217 4 1407 2903 71 46 2 chr1 107784483 107784877 -89410555 + RLTR10A LTR ERVK 1 411 0 4 1407 296 299 150 29 chr1 107785398 107785605 -89409827 + MIRb SINE MIR 32 263 -5 4 1407 762 264 34 14 chr1 107786010 107786218 -89409214 + B3A SINE B2 1 216 0 4 1407 217 246 16 16 chr1 107786870 107786932 -89408500 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1407 480 278 124 66 chr1 107786935 107787208 -89408224 - B4A SINE B4 -1 291 3 4 1407 539 173 9 0 chr1 107787542 107787652 -89407780 + CT-rich Low_complexity Low_complexity 2 112 0 4 1407 575 267 0 85 chr1 107789993 107790157 -89405275 + RSINE1 SINE B4 2 151 -14 4 1407 247 288 36 142 chr1 107790698 107791001 -89404431 + L1MEg LINE L1 1209 1479 -4605 4 1407 330 363 58 15 chr1 107792172 107792309 -89403123 - MIRm SINE MIR -123 153 11 4 1407 606 249 67 19 chr1 107792583 107792792 -89402640 - ID_B1 SINE B4 -2 222 4 4 1407 8548 26 2 7 chr1 107793295 107793370 -89402062 + L1Md_F3 LINE L1 5587 5661 -923 4 1407 1912 161 3 6 chr1 107793370 107793682 -89401750 - RLTR10E LTR ERVK 0 311 1 4 1407 8548 26 2 7 chr1 107793682 107794595 -89400837 + L1Md_F3 LINE L1 5662 6570 -14 4 1407 764 303 25 8 chr1 107795614 107795857 -89399575 - B4 SINE B4 -2 290 44 4 1407 280 286 127 68 chr1 107796498 107796734 -89398698 + MLT1C LTR MaLR 190 439 -28 4 1407 648 214 239 11 chr1 107797096 107797276 -89398156 + ID_B1 SINE B4 3 223 -1 4 1407 628 240 20 14 chr1 107798405 107798553 -89396879 - B1F1 SINE Alu 0 149 1 4 1407 218 266 0 15 chr1 107799765 107799830 -89395602 + CT-rich Low_complexity Low_complexity 3 66 0 4 1407 1338 118 118 31 chr1 107799993 107800247 -89395185 - Lx4B LINE L1 -4 7054 6779 5 1407 779 179 249 0 chr1 107800583 107800756 -89394676 + B3 SINE B2 1 216 0 5 1407 207 93 0 65 chr1 107800819 107800865 -89394567 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1407 586 263 15 56 chr1 107801381 107801578 -89393854 + B3A SINE B2 5 193 -5 5 1407 422 218 293 12 chr1 107801910 107802077 -89393355 - B3 SINE B2 -2 214 1 5 1407 263 302 0 0 chr1 107803312 107803398 -89392034 + L1MA6 LINE L1 6205 6290 -10 5 1407 888 64 21 0 chr1 107803407 107803548 -89391884 + (TG)n Simple_repeat Simple_repeat 2 145 0 5 1407 353 255 25 109 chr1 107803550 107803669 -89391763 - RSINE1 SINE B4 -33 132 24 5 1407 1174 167 179 11 chr1 107803865 107804216 -89391216 - RMER17C LTR ERVK 0 410 1 5 1407 372 94 0 0 chr1 107804452 107804505 -89390927 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1407 1774 153 58 61 chr1 107805921 107806126 -89389306 - RMER17C LTR ERVK 0 410 185 5 1407 759 43 0 67 chr1 107806126 107806276 -89389156 + (GGAGA)n Simple_repeat Simple_repeat 2 141 0 5 1407 1774 153 58 61 chr1 107806276 107806481 -89388951 - RMER17C LTR ERVK -226 184 1 5 1407 295 301 120 42 chr1 107806493 107806635 -89388797 + MLT1N2 LTR MaLR 305 457 -105 5 1407 332 272 0 24 chr1 107806667 107806750 -89388682 + RSINE1 SINE B4 2 82 -83 5 1407 219 69 0 0 chr1 107806994 107807023 -89388409 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 5 1407 224 333 32 24 chr1 107807644 107807767 -89387665 + B4A SINE B4 8 131 -161 5 1407 413 296 229 7 chr1 107807774 107808062 -89387370 + Lx9 LINE L1 7113 7464 -180 5 1407 1037 251 30 114 chr1 107808692 107809096 -89386336 + MTE2a LTR MaLR 8 377 -2 5 1407 3936 115 3 34 chr1 107809106 107809168 -89386264 + Lx4A LINE L1 5301 5362 -515 5 1407 1478 88 16 0 chr1 107809168 107809360 -89386072 + B2_Mm2 SINE B2 1 195 0 5 1407 8377 134 7 42 chr1 107809360 107810391 -89385041 + Lx4A LINE L1 5363 6386 -672 5 1407 1215 62 0 0 chr1 107810391 107810537 -89384895 + B1_Mus1 SINE Alu 2 147 -1 5 1407 8377 155 10 50 chr1 107810537 107811273 -89384159 + Lx4A LINE L1 6387 7058 0 5 1407 207 0 0 0 chr1 107811879 107811902 -89383530 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1407 303 295 61 79 chr1 107811945 107812059 -89383373 - RSINE1 SINE B4 -50 115 4 5 1407 287 287 46 0 chr1 107812060 107812147 -89383285 - PB1D10 SINE Alu -17 100 10 5 1407 230 353 0 0 chr1 107812093 107812161 -89383271 - B4A SINE B4 -144 148 81 5 1407 500 280 65 26 chr1 107812815 107812969 -89382463 - RSINE1 SINE B4 0 165 6 5 1407 600 264 16 27 chr1 107813255 107813442 -89381990 + MLT1C LTR MaLR 9 193 -274 5 1407 575 224 0 0 chr1 107813873 107813980 -89381452 + B1_Mur3 SINE Alu 1 107 -42 5 1407 366 107 0 0 chr1 107813995 107814051 -89381381 + (GGA)n Simple_repeat Simple_repeat 1 56 0 5 1407 833 126 28 11 chr1 107814083 107814260 -89381172 + GA-rich Low_complexity Low_complexity 1 180 0 5 1407 1201 323 75 20 chr1 107814403 107815145 -89380287 + L1MA4 LINE L1 2384 3166 -2977 5 1407 2234 301 61 114 chr1 107815422 107817641 -89377791 + L1MA4 LINE L1 3202 5302 -841 5 1407 875 290 44 18 chr1 107817692 107818075 -89377357 + L1MA4 LINE L1 5535 5927 -373 5 1407 471 60 0 0 chr1 107818086 107818153 -89377279 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1407 579 66 0 0 chr1 107818213 107818289 -89377143 + (GGA)n Simple_repeat Simple_repeat 3 78 0 5 1407 31 0 0 0 chr1 107818456 107818487 -89376945 + AT_rich Low_complexity Low_complexity 1 31 0 5 1407 244 330 50 30 chr1 107818605 107818705 -89376727 + MLT1C LTR MaLR 256 357 -33 5 1407 432 0 0 0 chr1 107818834 107818882 -89376550 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1407 474 243 76 0 chr1 107819984 107820128 -89375304 + Lx8 LINE L1 6974 7128 -345 5 1407 718 245 24 39 chr1 107820832 107820954 -89374478 + ID_B1 SINE B4 8 126 -166 5 1407 1390 230 94 40 chr1 107820954 107821433 -89373999 + RLTR16 LTR ERVK 1 505 0 5 1407 718 239 22 33 chr1 107821433 107821508 -89373924 + ID_B1 SINE B4 127 198 -26 5 1407 482 344 102 24 chr1 107821587 107821882 -89373550 + MT2A LTR ERVL 111 428 -105 5 1407 480 105 0 0 chr1 107821962 107822038 -89373394 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1407 420 258 58 43 chr1 107823130 107823268 -89372164 - B4A SINE B4 -142 150 11 5 1407 900 267 116 12 chr1 107823533 107823791 -89371641 + B4A SINE B4 2 286 -6 5 1407 435 52 0 0 chr1 107823791 107823849 -89371583 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1407 865 268 61 158 chr1 107823937 107824380 -89371052 + MTD LTR MaLR 6 405 -14 5 1407 260 271 17 0 chr1 107824403 107824462 -89370970 + B1F SINE Alu 18 77 -72 5 1407 248 333 11 0 chr1 107824986 107825073 -89370359 - Cheshire DNA MER1_type -2161 259 172 5 1407 480 254 44 37 chr1 107825075 107825210 -89370222 + B1_Mur1 SINE Alu 3 138 -11 5 1407 441 0 0 0 chr1 107825215 107825264 -89370168 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1407 390 21 0 0 chr1 107825264 107825310 -89370122 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1407 705 178 127 18 chr1 107825316 107825464 -89369968 + RMER17C LTR ERVK 227 393 -17 5 1407 183 80 0 0 chr1 107825464 107825489 -89369943 + (TTCTG)n Simple_repeat Simple_repeat 2 26 0 5 1407 705 178 127 18 chr1 107825489 107825506 -89369926 + RMER17C LTR ERVK 394 410 0 5 1407 377 229 35 95 chr1 107825507 107825623 -89369809 + RMER17C-int LTR ERVK 1 109 -3129 5 1407 993 208 125 29 chr1 107825634 107825906 -89369526 + RMER17C-int LTR ERVK 224 521 -2717 5 1407 484 199 13 128 chr1 107825972 107826128 -89369304 + RMER17C-int LTR ERVK 464 601 -2637 5 1407 222 62 0 0 chr1 107826393 107826425 -89369007 + (CTG)n Simple_repeat Simple_repeat 3 34 0 5 1407 1379 85 21 0 chr1 107826506 107826694 -89368738 - B2_Mm1t SINE B2 -1 192 1 5 1407 10045 151 52 92 chr1 107826905 107828250 -89367182 + RMER17C-int LTR ERVK 1100 2364 -874 5 1407 1038 120 0 0 chr1 107828250 107828392 -89367040 - B1_Mus1 SINE Alu -5 143 2 5 1407 10045 151 52 92 chr1 107828392 107828656 -89366776 + RMER17C-int LTR ERVK 2365 2616 -622 5 1407 268 196 0 0 chr1 107828656 107828702 -89366730 - LSU-rRNA_Hsa rRNA rRNA -788 4247 4202 5 1407 10045 151 52 92 chr1 107828702 107828967 -89366465 + RMER17C-int LTR ERVK 2617 2871 -367 5 1407 387 0 0 0 chr1 107828967 107829010 -89366422 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1407 10045 151 52 92 chr1 107829010 107829317 -89366115 + RMER17C-int LTR ERVK 2872 3237 -1 5 1407 553 222 96 61 chr1 107829322 107829609 -89365823 + RMER17C LTR ERVK 29 410 0 5 1407 232 270 133 13 chr1 107829644 107829719 -89365713 + MLT1A LTR MaLR 286 369 -5 5 1407 267 297 108 0 chr1 107829750 107829861 -89365571 - B1F SINE Alu -24 125 3 5 1407 645 269 18 24 chr1 107829861 107829943 -89365489 - ID SINE ID -139 85 5 5 1407 307 173 0 0 chr1 107830360 107830412 -89365020 + L1M3 LINE L1 2144 2195 -3945 5 1407 554 241 0 36 chr1 107830837 107830949 -89364483 - RSINE1 SINE B4 0 165 58 5 1407 1894 49 0 0 chr1 107830949 107831172 -89364260 - L1Md_F2 LINE L1 -249 6333 6111 5 1407 6404 25 0 0 chr1 107831172 107831981 -89363451 - MTA_Mm-int LTR MaLR -288 810 2 5 1407 3388 30 8 0 chr1 107831982 107832375 -89363057 - MTA_Mm LTR MaLR 0 396 1 5 1407 9725 67 21 2 chr1 107832377 107833250 -89362182 - L1_Mm LINE L1 -253 5630 4736 5 1407 273 29 0 0 chr1 107833250 107833284 -89362148 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1407 9725 67 21 2 chr1 107833284 107833675 -89361757 - L1_Mm LINE L1 -1148 4735 4343 5 1407 26858 95 35 39 chr1 107833676 107834731 -89360701 - RMER16-int LTR ERVK -1352 4054 3033 5 1407 2823 15 6 24 chr1 107834731 107835064 -89360368 + IAPLTR2b LTR ERVK 1 327 0 5 1407 26858 95 35 39 chr1 107835064 107836611 -89358821 - RMER16-int LTR ERVK -2374 3032 1534 5 1407 1153 75 0 0 chr1 107836611 107836758 -89358674 - B1_Mm SINE Alu 0 147 1 5 1407 26858 95 35 39 chr1 107836758 107838224 -89357208 - RMER16-int LTR ERVK -3873 1533 2 5 1407 2491 127 48 29 chr1 107838225 107838258 -89357174 - RMER16 LTR ERVK 0 533 501 5 1407 2898 59 3 13 chr1 107838258 107838635 -89356797 + L1_Mus2 LINE L1 6193 6565 -1 5 1407 2491 129 47 27 chr1 107838635 107839079 -89356353 - RMER16 LTR ERVK -33 500 2 5 1407 296 266 48 48 chr1 107839167 107839250 -89356182 + ID4_ SINE ID 1 83 0 5 1407 21 0 0 0 chr1 107839261 107839282 -89356150 + AT_rich Low_complexity Low_complexity 1 21 0 5 1407 30 45 0 0 chr1 107839422 107839466 -89355966 + AT_rich Low_complexity Low_complexity 1 44 0 5 1407 885 286 30 123 chr1 107839478 107839884 -89355548 - MTE2a LTR MaLR 0 379 12 5 1407 989 291 109 0 chr1 107840243 107840545 -89354887 - MTEa LTR MaLR -3 376 42 5 1407 351 304 71 8 chr1 107840586 107840712 -89354720 - MTE-int LTR MaLR -37 1543 1410 5 1407 588 326 49 25 chr1 107840983 107841307 -89354125 - MTE-int LTR MaLR -461 1119 788 5 1407 474 250 0 0 chr1 107842131 107842235 -89353197 + U6 snRNA snRNA 2 105 -2 5 1407 1737 5 0 0 chr1 107842380 107842575 -89352857 + L1Md_A LINE L1 6388 6582 0 5 1407 180 0 0 0 chr1 107842843 107842863 -89352569 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1407 1493 243 88 62 chr1 107842893 107842991 -89352441 + RLTR20A2 LTR ERVK 92 210 -367 5 1407 207 0 0 0 chr1 107842991 107843014 -89352418 + (GGA)n Simple_repeat Simple_repeat 3 25 0 5 1407 1493 221 71 25 chr1 107843014 107843298 -89352134 + RLTR20A2 LTR ERVK 192 491 -87 5 1407 384 22 0 0 chr1 107843298 107843343 -89352089 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1407 1493 221 71 25 chr1 107843343 107843434 -89351998 + RLTR20A2 LTR ERVK 492 578 0 5 1407 1869 227 37 98 chr1 107844636 107845886 -89349546 + RMER1A Other Other 1 1030 0 5 1407 189 312 38 25 chr1 107846144 107846223 -89349209 + L2a LINE L2 3347 3426 0 5 1407 440 296 34 23 chr1 107846917 107847093 -89348339 - MLT1B LTR MaLR -2 388 211 5 1407 343 293 58 36 chr1 107847220 107847358 -89348074 - B1F SINE Alu -8 141 1 5 1407 25 0 0 0 chr1 107847719 107847744 -89347688 + AT_rich Low_complexity Low_complexity 1 25 0 5 1407 880 129 7 41 chr1 107848284 107848430 -89347002 - B1_Mur4 SINE Alu -8 142 2 5 1407 222 105 0 0 chr1 107848811 107848849 -89346583 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1407 30 0 0 0 chr1 107848929 107848959 -89346473 + AT_rich Low_complexity Low_complexity 1 30 0 5 1407 342 0 0 0 chr1 107849182 107849220 -89346212 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1407 779 0 11 0 chr1 107849220 107849310 -89346122 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1407 489 138 0 0 chr1 107849446 107849526 -89345906 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 5 1407 544 38 25 0 chr1 107849576 107849655 -89345777 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 5 1407 598 301 15 0 chr1 107849688 107849824 -89345608 - RSINE1 SINE B4 -19 146 9 5 1407 353 198 25 8 chr1 107850022 107850144 -89345288 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 1407 225 263 0 17 chr1 107850320 107850378 -89345054 - Lx8 LINE L1 -403 7070 7014 5 1407 331 237 30 35 chr1 107850378 107850485 -89344947 - B4 SINE B4 -118 174 74 5 1407 500 225 33 8 chr1 107850485 107850606 -89344826 - RLTR25A LTR ERVK 0 1028 905 5 1407 505 180 10 10 chr1 107850624 107850725 -89344707 - RLTR25A LTR ERVK -303 725 625 5 1407 960 163 19 61 chr1 107850697 107850958 -89344474 - ORR1A3-int LTR MaLR -996 967 718 5 1407 1158 142 79 83 chr1 107850917 107851171 -89344261 - MT2B LTR ERVL -314 287 35 5 1407 2452 172 35 70 chr1 107851188 107851733 -89343699 - RLTR25A LTR ERVK -577 526 1 5 1407 360 0 0 0 chr1 107851911 107851951 -89343481 + (CTA)n Simple_repeat Simple_repeat 2 41 0 6 1407 1671 158 30 57 chr1 107851984 107852353 -89343079 + RLTR15 LTR ERVK 1 359 0 6 1407 189 0 0 0 chr1 107852558 107852579 -89342853 + (G)n Simple_repeat Simple_repeat 1 21 0 6 1407 382 229 48 0 chr1 107852909 107853014 -89342418 - MLT1B LTR MaLR -213 177 68 6 1407 327 301 136 15 chr1 107853022 107853346 -89342086 + Charlie1 DNA MER1_type 2025 2387 -394 6 1407 704 250 11 17 chr1 107853404 107853583 -89341849 - B3A SINE B2 -20 178 1 6 1407 571 321 31 20 chr1 107853589 107853843 -89341589 - MER2 DNA MER2_type -3 342 86 6 1407 720 253 67 39 chr1 107853936 107854220 -89341212 - B4A SINE B4 0 292 1 6 1407 1837 119 12 63 chr1 107854642 107854973 -89340459 - ORR1A4 LTR MaLR 0 329 16 6 1407 452 250 58 14 chr1 107855137 107855275 -89340157 + B1F SINE Alu 2 145 -4 6 1407 182 301 0 82 chr1 107855359 107855469 -89339963 - MIRm SINE MIR -15 193 90 6 1407 361 322 9 0 chr1 107855528 107855643 -89339789 - PB1D10 SINE Alu -1 116 1 6 1407 366 107 0 0 chr1 107855645 107855701 -89339731 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 6 1407 439 223 78 0 chr1 107855701 107855804 -89339628 - PB1D9 SINE Alu -7 113 3 6 1407 427 265 103 69 chr1 107855832 107856035 -89339397 + B3 SINE B2 1 210 -6 6 1407 229 333 24 73 chr1 107856229 107856352 -89339080 + PB1D9 SINE Alu 3 119 -1 6 1407 733 108 31 0 chr1 107856594 107856723 -89338709 + (TTTC)n Simple_repeat Simple_repeat 3 135 0 6 1407 807 108 0 0 chr1 107856724 107856844 -89338588 + (TTCCC)n Simple_repeat Simple_repeat 4 123 0 6 1407 324 265 127 15 chr1 107856846 107856980 -89338452 - B1F1 SINE Alu 0 149 1 6 1407 270 0 0 0 chr1 107857619 107857649 -89337783 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1407 378 0 0 0 chr1 107857649 107857690 -89337742 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1407 213 216 0 0 chr1 107857691 107857728 -89337704 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1407 328 277 115 14 chr1 107859450 107859589 -89335843 + RSINE1 SINE B4 2 154 -11 6 1407 301 232 68 39 chr1 107859747 107859850 -89335582 + MLT1A1 LTR MaLR 303 408 0 6 1407 325 198 23 0 chr1 107859981 107860067 -89335365 + CT-rich Low_complexity Low_complexity 1 88 0 6 1407 453 19 0 0 chr1 107860165 107860219 -89335213 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1407 592 250 36 6 chr1 107860279 107860444 -89334988 + MER115 DNA Tip100 516 685 -8 6 1407 21 57 0 0 chr1 107861047 107861082 -89334350 + AT_rich Low_complexity Low_complexity 1 35 0 6 1407 1047 258 116 0 chr1 107861143 107861461 -89333971 + ORR1E LTR MaLR 1 355 -4 6 1407 251 276 90 45 chr1 107862102 107862235 -89333197 + MLT1A1 LTR MaLR 270 408 0 6 1407 988 246 106 6 chr1 107862309 107862648 -89332784 + L1MB7 LINE L1 4790 5162 -984 6 1407 430 280 7 70 chr1 107862657 107862764 -89332668 + B1F2 SINE Alu 11 118 -31 6 1407 1512 142 109 52 chr1 107862764 107863150 -89332282 - RMER17C LTR ERVK 0 410 3 6 1407 430 280 7 70 chr1 107863150 107863184 -89332248 + B1F2 SINE Alu 119 143 -6 6 1407 417 243 63 107 chr1 107863188 107863475 -89331957 + L1MB7 LINE L1 5168 5446 -732 6 1407 6165 196 131 19 chr1 107863493 107864939 -89330493 + Lx9 LINE L1 5810 7417 -227 6 1407 558 266 97 75 chr1 107864974 107865416 -89330016 - RLTR12B LTR ERVK -30 498 47 6 1407 490 231 38 120 chr1 107865425 107865691 -89329741 + Lx9 LINE L1 7394 7637 -7 6 1407 850 274 94 9 chr1 107865705 107866033 -89329399 + L1MB7 LINE L1 5426 5781 -393 6 1407 231 167 0 0 chr1 107866123 107866165 -89329267 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1407 1113 253 19 15 chr1 107866165 107866434 -89328998 - B4A SINE B4 0 292 23 6 1407 333 370 20 0 chr1 107866460 107866606 -89328826 + Tigger5 DNA MER2_type 53 201 -2205 6 1407 243 305 75 9 chr1 107866643 107866749 -89328683 + Tigger5 DNA MER2_type 2291 2403 -3 6 1407 405 262 51 45 chr1 107866810 107866966 -89328466 + L1MB7 LINE L1 5844 6000 -184 6 1407 782 303 42 0 chr1 107866964 107867248 -89328184 - L1_Mur3 LINE L1 -1315 4565 4270 6 1407 1407 221 35 121 chr1 107867249 107867829 -89327603 + L1_Rod LINE L1 4758 5287 -560 6 1407 808 207 6 12 chr1 107867812 107867978 -89327454 + Lx6 LINE L1 6871 7035 -425 6 1407 1006 135 215 5 chr1 107867978 107868164 -89327268 - URR1B DNA MER1_type 0 225 1 6 1407 1360 111 230 69 chr1 107869093 107869324 -89326108 + Lx LINE L1 6251 6518 -136 6 1407 216 0 0 0 chr1 107869324 107869348 -89326084 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 6 1407 1360 111 230 69 chr1 107869348 107869464 -89325968 + Lx LINE L1 6519 6653 -1 6 1407 452 273 68 8 chr1 107869688 107869821 -89325611 - RSINE1 SINE B4 -17 148 8 6 1407 297 0 0 0 chr1 107870015 107870048 -89325384 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1407 352 301 108 13 chr1 107870694 107870852 -89324580 + B4A SINE B4 104 276 -16 6 1407 441 179 0 0 chr1 107870902 107871025 -89324407 + CT-rich Low_complexity Low_complexity 2 124 0 6 1407 297 0 0 0 chr1 107871025 107871058 -89324374 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1407 352 159 203 0 chr1 107871486 107871555 -89323877 + PB1D7 SINE Alu 29 111 -9 6 1408 258 280 66 33 chr1 107872838 107872960 -89322472 - RSINE1 SINE B4 0 165 40 6 1408 792 128 21 7 chr1 107872986 107873128 -89322304 - B2_Mm2 SINE B2 0 195 52 6 1408 1486 191 49 0 chr1 107873128 107873416 -89322016 + Lx9 LINE L1 6425 6726 -918 6 1408 707 293 29 14 chr1 107873422 107873630 -89321802 - B4 SINE B4 -71 221 11 6 1408 226 323 47 8 chr1 107873654 107873782 -89321650 + L1M4b LINE L1 409 541 -6363 6 1408 324 368 58 43 chr1 107874487 107874834 -89320598 + L1M4b LINE L1 1261 1612 -5722 6 1408 1081 265 63 18 chr1 107874904 107875235 -89320197 + Lx6 LINE L1 7084 7429 -31 6 1408 435 251 97 90 chr1 107875240 107875530 -89319902 + L1M4b LINE L1 4370 4655 -2351 6 1408 2166 78 23 78 chr1 107875530 107875878 -89319554 + ORR1A4 LTR MaLR 1 329 0 6 1408 435 251 97 90 chr1 107875878 107875999 -89319433 + L1M4b LINE L1 4656 4784 -2222 6 1408 738 235 33 42 chr1 107876041 107876254 -89319178 + B3 SINE B2 1 211 -5 6 1408 313 270 31 0 chr1 107876694 107876829 -89318603 + L1M4b LINE L1 5118 5267 -1739 6 1408 307 330 33 0 chr1 107876894 107876985 -89318447 + RSINE1 SINE B4 72 165 0 6 1408 254 273 0 0 chr1 107877106 107877172 -89318260 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 6 1408 275 277 83 9 chr1 107877344 107877466 -89317966 + MIRb SINE MIR 17 150 -118 6 1408 1642 140 0 7 chr1 107878633 107878907 -89316525 + ORR1A3 LTR MaLR 47 318 -8 6 1408 654 274 112 0 chr1 107878932 107879111 -89316321 - ID_B1 SINE B4 -14 210 12 6 1408 1197 204 29 24 chr1 107880233 107880720 -89314712 - RLTR20A LTR ERVK 0 541 1 6 1408 306 317 161 32 chr1 107881090 107881500 -89313932 - L1MC4 LINE L1 -1 8041 7579 6 1408 604 207 81 7 chr1 107881574 107881710 -89313722 + B1_Mus2 SINE Alu 2 147 0 6 1408 468 235 167 86 chr1 107881968 107882154 -89313278 - B3 SINE B2 -7 209 9 6 1408 253 279 0 0 chr1 107883469 107883530 -89311902 + PB1D9 SINE Alu 60 120 0 6 1408 509 110 12 0 chr1 107883532 107883614 -89311818 + (GGA)n Simple_repeat Simple_repeat 3 85 0 6 1408 279 0 0 0 chr1 107883614 107883645 -89311787 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1408 563 256 43 65 chr1 107883813 107883997 -89311435 - B3A SINE B2 -18 180 1 6 1408 496 298 109 17 chr1 107884302 107884476 -89310956 - MT2A LTR ERVL -2 531 342 6 1408 216 0 0 0 chr1 107885034 107885058 -89310374 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1408 378 0 0 0 chr1 107885881 107885923 -89309509 + (TAA)n Simple_repeat Simple_repeat 2 43 0 6 1408 28 79 0 0 chr1 107887200 107887263 -89308169 + GC_rich Low_complexity Low_complexity 1 63 0 6 1408 211 164 0 52 chr1 107887471 107887548 -89307884 + (CCG)n Simple_repeat Simple_repeat 2 74 0 6 1408 26 74 0 0 chr1 107887574 107887628 -89307804 + GC_rich Low_complexity Low_complexity 1 54 0 6 1408 1074 91 0 20 chr1 107893065 107893211 -89302221 - B1_Mus1 SINE Alu -2 146 4 6 1408 248 91 0 57 chr1 107893717 107893787 -89301645 + (TTTTTG)n Simple_repeat Simple_repeat 2 67 0 6 1408 837 96 8 0 chr1 107894310 107894435 -89300997 - B2_Mm1t SINE B2 -33 160 35 6 1408 947 265 14 0 chr1 107897722 107897933 -89297499 - ID_B1 SINE B4 -10 214 1 6 1408 325 221 67 34 chr1 107898962 107899051 -89296381 + B4A SINE B4 10 101 -191 6 1408 254 167 17 0 chr1 107899870 107899930 -89295502 + CT-rich Low_complexity Low_complexity 2 62 0 6 1408 523 168 46 18 chr1 107900155 107900264 -89295168 + B3 SINE B2 105 216 0 6 1408 185 195 50 25 chr1 107900850 107900971 -89294461 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 6 1408 2452 203 95 11 chr1 107903586 107904114 -89291318 - Lx6 LINE L1 -6 7454 6883 6 1408 21 36 0 0 chr1 107906342 107906370 -89289062 + AT_rich Low_complexity Low_complexity 1 28 0 6 1408 507 272 226 13 chr1 107906822 107907057 -89288375 + B4A SINE B4 5 289 -3 6 1408 324 0 0 0 chr1 107908684 107908720 -89286712 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 6 1408 340 248 95 0 chr1 107909083 107909188 -89286244 + PB1D10 SINE Alu 2 116 -1 6 1408 412 340 28 7 chr1 107910917 107911062 -89284370 - B1F2 SINE Alu -1 148 1 6 1408 350 340 31 56 chr1 107911062 107911079 -89284353 - ID_B1 SINE B4 -2 222 65 6 1408 271 229 57 0 chr1 107911892 107911962 -89283470 + B1F SINE Alu 74 147 -2 6 1408 294 336 83 32 chr1 107914925 107915143 -89280289 + L1M5 LINE L1 4809 5037 -1109 6 1408 403 257 55 9 chr1 107916171 107916281 -89279151 + PB1D10 SINE Alu 1 115 -2 6 1408 471 18 0 0 chr1 107916992 107917048 -89278384 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1408 302 284 159 37 chr1 107917557 107917802 -89277630 - L1MEg LINE L1 -4953 1131 857 6 1408 359 306 93 36 chr1 107919134 107919327 -89276105 - Tigger7 DNA MER2_type 0 2491 2288 6 1408 267 206 0 0 chr1 107919928 107919996 -89275436 - MER4B-int LTR ERV1 -5563 1195 1128 6 1408 1456 170 84 49 chr1 107920545 107920891 -89274541 - ORR1D1 LTR MaLR -12 362 5 6 1408 217 246 0 0 chr1 107921665 107921722 -89273710 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1408 462 255 65 53 chr1 107921944 107922114 -89273318 - B3 SINE B2 -8 187 16 7 1408 269 319 0 87 chr1 107922311 107922438 -89272994 + PB1D10 SINE Alu 2 117 0 7 1408 313 203 0 48 chr1 107922511 107922594 -89272838 + B3A SINE B2 1 79 -119 7 1408 224 341 58 52 chr1 107922594 107922684 -89272748 + B4A SINE B4 1 174 -118 7 1408 217 219 0 0 chr1 107922734 107922775 -89272657 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1408 261 0 0 0 chr1 107922926 107922955 -89272477 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1408 242 271 62 10 chr1 107924342 107924439 -89270993 - L1M4 LINE L1 -6332 210 109 7 1408 669 257 182 40 chr1 107931217 107931541 -89263891 - ORR1D2 LTR MaLR 0 370 1 7 1408 240 229 32 16 chr1 107933561 107933623 -89261809 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 7 1408 279 0 0 0 chr1 107933679 107933710 -89261722 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 1408 561 190 52 0 chr1 107934369 107934485 -89260947 + B1F2 SINE Alu 28 149 0 7 1408 3168 192 88 29 chr1 107934633 107935650 -89259782 - Lx4A LINE L1 -1 7057 5951 7 1408 266 239 28 14 chr1 107936442 107936514 -89258918 + PB1D10 SINE Alu 39 111 -6 7 1408 459 0 0 0 chr1 107937223 107937274 -89258158 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1408 351 0 0 0 chr1 107937274 107937312 -89258120 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1408 531 56 0 0 chr1 107937420 107937491 -89257941 + (CATA)n Simple_repeat Simple_repeat 2 72 0 7 1408 228 320 97 0 chr1 107938851 107938954 -89256478 - Tigger5 DNA MER2_type -2174 232 120 7 1408 629 292 70 30 chr1 107939076 107939376 -89256056 - L1MD LINE L1 -2414 5581 5270 7 1408 341 220 110 9 chr1 107939479 107939616 -89255816 - L1MC LINE L1 -809 5337 5188 7 1408 304 316 53 62 chr1 107939619 107939828 -89255604 - LTR84b LTR ERVL -60 701 495 7 1408 528 228 8 34 chr1 107940503 107940608 -89254824 + PB1D9 SINE Alu 6 111 -9 7 1408 558 55 33 0 chr1 107940608 107940699 -89254733 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 7 1408 528 228 8 34 chr1 107940699 107940711 -89254721 + PB1D9 SINE Alu 112 120 0 7 1408 1293 105 5 31 chr1 107940815 107941011 -89254421 + B2_Mm1a SINE B2 2 192 -1 7 1408 230 0 0 32 chr1 107941260 107941291 -89254141 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1408 277 310 20 0 chr1 107941630 107941730 -89253702 + L1MD LINE L1 5211 5312 -834 7 1408 314 240 80 0 chr1 107941730 107941805 -89253627 + B1F2 SINE Alu 3 83 -66 7 1408 286 218 22 33 chr1 107941836 107941926 -89253506 + GA-rich Low_complexity Low_complexity 4 92 0 7 1408 397 294 96 16 chr1 107942054 107942241 -89253191 + L1ME1 LINE L1 5685 5886 -293 7 1408 14484 72 73 3 chr1 107942300 107945052 -89250380 + L1VL2 LINE L1 64 2988 -627 7 1408 267 285 61 20 chr1 107945802 107945817 -89249615 - MT2A LTR ERVL -380 153 1 7 1408 354 280 38 0 chr1 107945817 107945949 -89249483 - MTEa LTR MaLR -242 137 1 7 1408 204 67 0 0 chr1 107946634 107946664 -89248768 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1408 24 32 0 0 chr1 107946696 107946727 -89248705 + AT_rich Low_complexity Low_complexity 1 31 0 7 1408 183 42 0 0 chr1 107946747 107946771 -89248661 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1408 28 0 0 0 chr1 107946803 107946831 -89248601 + AT_rich Low_complexity Low_complexity 1 28 0 7 1408 290 331 63 31 chr1 107946955 107947114 -89248318 - RSINE1 SINE B4 0 165 2 7 1408 617 229 182 0 chr1 107947143 107947313 -89248119 - B3 SINE B2 -15 201 1 7 1408 271 257 0 54 chr1 107947405 107947479 -89247953 - B4A SINE B4 -206 86 17 7 1408 321 26 0 0 chr1 107947494 107947532 -89247900 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1408 540 0 0 0 chr1 107947532 107947591 -89247841 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1408 1112 95 0 0 chr1 107947594 107947752 -89247680 - B2_Mm2 SINE B2 -37 158 1 7 1408 483 227 49 112 chr1 107947780 107947818 -89247614 + B3 SINE B2 2 29 -187 7 1408 438 229 57 0 chr1 107947818 107947923 -89247509 + PB1D9 SINE Alu 2 112 -8 7 1408 500 227 49 112 chr1 107947923 107948107 -89247325 + B3A SINE B2 30 210 -6 7 1408 252 0 0 0 chr1 107948515 107948543 -89246889 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1408 335 247 62 0 chr1 107948582 107948679 -89246753 - ID_B1 SINE B4 -90 134 32 7 1408 606 236 7 14 chr1 107949043 107949189 -89246243 - B1_Mur1 SINE Alu -1 148 4 7 1408 492 257 13 65 chr1 107949192 107949346 -89246086 - RSINE1 SINE B4 -18 147 2 7 1408 1014 298 87 48 chr1 107949367 107950012 -89245420 - L1MB2 LINE L1 -220 5951 5282 7 1408 8400 194 45 31 chr1 107950943 107954078 -89241354 - Lx6 LINE L1 0 7460 4292 7 1408 427 82 20 39 chr1 107954078 107954180 -89241252 + (TTTTG)n Simple_repeat Simple_repeat 2 101 0 7 1408 4473 145 7 249 chr1 107954182 107954891 -89240541 - Lx6 LINE L1 -1595 4285 3608 7 1408 1156 186 21 29 chr1 107954891 107955129 -89240303 - RLTR23 LTR ERV1 0 430 195 7 1408 4473 145 7 249 chr1 107955129 107955158 -89240274 - Lx6 LINE L1 -2273 3607 3581 7 1408 376 105 197 0 chr1 107955158 107955234 -89240198 - RLTR23 LTR ERV1 -330 100 10 7 1408 4473 145 7 249 chr1 107955234 107955684 -89239748 - Lx6 LINE L1 -1595 3580 3147 7 1408 426 232 22 82 chr1 107955714 107955897 -89239535 - Lx6 LINE L1 -7405 323 152 7 1408 820 238 22 0 chr1 107956555 107956740 -89238692 + B3A SINE B2 7 195 -3 7 1408 427 55 27 27 chr1 107956866 107956941 -89238491 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 7 1408 553 116 0 31 chr1 107956962 107957060 -89238372 - B1_Mus2 SINE Alu 0 147 53 7 1408 296 102 20 0 chr1 107957159 107957208 -89238224 + (GA)n Simple_repeat Simple_repeat 2 51 0 7 1408 318 218 0 0 chr1 107957380 107957435 -89237997 - B1_Mus2 SINE Alu -92 55 1 7 1408 475 271 186 0 chr1 107957438 107957615 -89237817 - ID_B1 SINE B4 -1 223 14 7 1408 465 342 64 58 chr1 107957823 107958165 -89237267 - MLT1D-int LTR MaLR -950 437 94 7 1408 256 301 152 43 chr1 107959518 107959702 -89235730 - ID_B1 SINE B4 -19 205 2 7 1408 937 69 131 0 chr1 107959752 107959882 -89235550 + B1_Mus1 SINE Alu 2 148 0 7 1408 431 196 39 0 chr1 107960156 107960258 -89235174 - MLT1C LTR MaLR -361 106 1 7 1408 227 309 36 0 chr1 107960320 107960404 -89235028 - MLT1D LTR MaLR -18 487 401 7 1408 351 65 0 0 chr1 107961931 107961977 -89233455 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1408 262 152 17 17 chr1 107962109 107962169 -89233263 + GA-rich Low_complexity Low_complexity 2 61 0 7 1408 671 210 208 67 chr1 107962830 107963085 -89232347 + B4A SINE B4 2 292 0 7 1408 579 243 0 0 chr1 107963141 107963314 -89232118 + (CA)n Simple_repeat Simple_repeat 2 174 0 7 1408 216 97 0 0 chr1 107963764 107963795 -89231637 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 7 1408 309 333 89 22 chr1 107963796 107963931 -89231501 - B1F SINE Alu -2 147 4 7 1408 4046 189 14 46 chr1 107963929 107964794 -89230638 - RMER13B LTR ERVK 0 908 5 7 1408 184 59 59 0 chr1 107965153 107965187 -89230245 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1408 369 264 246 0 chr1 107965290 107965400 -89230032 + RSINE1 SINE B4 3 139 -26 7 1408 1868 186 52 37 chr1 107965567 107965969 -89229463 - MTC LTR MaLR -8 413 6 7 1408 312 246 200 0 chr1 107967177 107967287 -89228145 - RSINE1 SINE B4 -32 133 2 7 1408 335 195 94 23 chr1 107967846 107967954 -89227478 + L1MB4 LINE L1 5859 5973 -201 7 1408 406 250 29 20 chr1 107968178 107968280 -89227152 + B3A SINE B2 2 104 -94 7 1408 219 275 434 45 chr1 107968493 107968629 -89226803 - MER5A DNA MER1_type 0 189 1 7 1408 273 365 8 0 chr1 107968857 107968983 -89226449 + MER5A DNA MER1_type 15 141 -48 7 1408 27 49 0 0 chr1 107969117 107969158 -89226274 + AT_rich Low_complexity Low_complexity 1 41 0 7 1408 686 155 134 18 chr1 107969313 107969453 -89225979 + B2_Mm2 SINE B2 7 161 -34 7 1408 198 71 0 0 chr1 107969453 107969481 -89225951 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7 1408 686 155 134 18 chr1 107969481 107969504 -89225928 + B2_Mm2 SINE B2 162 189 -6 7 1408 367 309 93 22 chr1 107969507 107969646 -89225786 + B1F2 SINE Alu 1 149 0 7 1408 188 146 0 35 chr1 107969654 107969711 -89225721 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 1408 217 89 22 22 chr1 107970245 107970291 -89225141 + (TTG)n Simple_repeat Simple_repeat 2 47 0 7 1408 661 79 0 0 chr1 107970329 107970418 -89225014 - B1_Mur2 SINE Alu -9 140 52 7 1408 284 361 59 72 chr1 107971064 107971109 -89224323 + B4 SINE B4 63 101 -191 7 1408 2455 152 198 35 chr1 107971109 107971701 -89223731 + RMER6C LTR ERVK 3 690 0 7 1408 411 344 54 9 chr1 107971701 107971876 -89223556 + B4A SINE B4 102 280 -12 7 1408 775 240 67 19 chr1 107972178 107972386 -89223046 - ID_B1 SINE B4 0 224 7 7 1408 466 252 65 69 chr1 107972429 107972681 -89222751 + RLTR12B LTR ERVK 10 231 -297 7 1408 624 209 215 0 chr1 107973084 107973256 -89222176 - ID_B1 SINE B4 -15 209 1 7 1408 294 355 112 24 chr1 107973741 107973992 -89221440 + L3b LINE CR1 58 330 -152 7 1408 306 0 0 0 chr1 107974502 107974536 -89220896 + (TTG)n Simple_repeat Simple_repeat 2 35 0 7 1408 3046 80 42 0 chr1 107974603 107975003 -89220429 - Lx4A LINE L1 -325 6733 6317 7 1408 1927 149 77 3 chr1 107975004 107975327 -89220105 + Lx4A LINE L1 6712 7058 0 7 1408 6557 57 1 4 chr1 107975906 107975921 -89219511 + L1Md_F2 LINE L1 5078 5091 -792 7 1408 4163 56 2 6 chr1 107975921 107976444 -89218988 - L1Md_F2 LINE L1 0 6582 6062 7 1408 6557 47 3 2 chr1 107976444 107977425 -89218007 + L1Md_F2 LINE L1 5092 6074 -508 7 1408 620 278 46 15 chr1 107978056 107978253 -89217179 - ID_B1 SINE B4 -19 205 3 7 1408 395 244 108 23 chr1 107978275 107978405 -89217027 + ID_B1 SINE B4 84 224 0 7 1408 285 293 53 0 chr1 107978649 107978799 -89216633 - L1M5 LINE L1 -721 5473 5316 7 1408 3480 240 68 44 chr1 107979427 107980549 -89214883 - Lx7 LINE L1 0 7696 6434 7 1408 8582 203 61 22 chr1 107980539 107982598 -89212834 - L1_Mur3 LINE L1 -1616 4264 2127 7 1408 5489 181 81 73 chr1 107982598 107982884 -89212548 + RLTR22_Mur LTR ERVK 1 281 -1567 7 1408 3574 33 19 0 chr1 107982884 107983308 -89212124 - L1Md_F3 LINE L1 0 6584 6153 7 1408 5489 181 81 73 chr1 107983308 107984204 -89211228 + RLTR22_Mur LTR ERVK 282 1174 -674 7 1408 4153 57 2 0 chr1 107984204 107984710 -89210722 - L1_Mus1 LINE L1 0 6567 6061 8 1408 5489 181 81 73 chr1 107984710 107984760 -89210672 + RLTR22_Mur LTR ERVK 1175 1210 -638 7 1408 3534 25 2 0 chr1 107984760 107985155 -89210277 + MTA_Mm LTR MaLR 1 396 0 8 1408 5489 181 81 73 chr1 107985155 107985521 -89209911 + RLTR22_Mur LTR ERVK 1211 1613 -235 7 1408 773 47 0 0 chr1 107985543 107985649 -89209783 - B1_Mm SINE Alu 0 147 42 8 1408 393 68 0 33 chr1 107985707 107985768 -89209664 - B1_Mus2 SINE Alu -88 59 1 8 1408 330 235 251 29 chr1 107985768 107985942 -89209490 + RLTR22_Mur LTR ERVK 1601 1813 -35 7 1408 2193 195 78 4 chr1 107985958 107986061 -89209371 - L1_Mur3 LINE L1 -3744 2136 2032 7 1408 243 0 0 0 chr1 107986061 107986088 -89209344 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 8 1408 2193 195 78 4 chr1 107986088 107986498 -89208934 - L1_Mur3 LINE L1 -3849 2031 1586 7 1408 1253 228 52 46 chr1 107987777 107988458 -89206974 - L1_Mur3 LINE L1 -4333 1547 855 7 1408 36 91 0 0 chr1 107988879 107988978 -89206454 + AT_rich Low_complexity Low_complexity 1 99 0 8 1408 655 287 115 33 chr1 107989022 107989292 -89206140 - B4A SINE B4 0 292 1 8 1408 2591 161 35 57 chr1 107989297 107989837 -89205595 + RLTR11A LTR ERVK 1 528 0 8 1408 426 232 35 18 chr1 107989873 107989987 -89205445 - ID_B1 SINE B4 -2 222 107 8 1408 251 308 0 7 chr1 107990119 107990232 -89205200 - ID4 SINE ID -36 116 6 8 1408 244 237 25 62 chr1 107990160 107990241 -89205191 - ID SINE ID -146 78 1 8 1408 949 188 0 6 chr1 107990414 107990575 -89204857 + Lx6 LINE L1 6918 7077 -383 8 1408 3457 196 53 15 chr1 107990586 107991024 -89204408 - Lx6 LINE L1 -30 7430 6962 8 1408 4098 109 14 5 chr1 107991024 107991603 -89203829 + MT2B2 LTR ERVL 1 584 0 8 1408 3457 196 53 15 chr1 107991603 107991818 -89203614 - Lx6 LINE L1 -499 6961 6752 8 1408 2331 223 45 4 chr1 107991816 107992064 -89203368 - Lx7 LINE L1 -1259 6437 6188 8 1408 315 0 0 0 chr1 107992064 107992099 -89203333 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1408 207 100 0 0 chr1 107992099 107992128 -89203304 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 1408 2331 223 45 4 chr1 107992128 107992432 -89203000 - Lx7 LINE L1 -1509 6187 5864 8 1408 542 255 55 12 chr1 107995149 107995312 -89200120 + B4 SINE B4 7 176 -116 8 1408 214 116 44 44 chr1 107995345 107995390 -89200042 + (CATG)n Simple_repeat Simple_repeat 3 47 0 8 1408 21 0 0 0 chr1 107995391 107995412 -89200020 + AT_rich Low_complexity Low_complexity 1 21 0 8 1408 939 281 16 19 chr1 107995449 107995707 -89199725 + MTEa LTR MaLR 1 257 -122 8 1408 339 347 6 23 chr1 107996313 107996490 -89198942 + (CA)n Simple_repeat Simple_repeat 2 175 0 8 1408 501 283 20 27 chr1 107998158 107998307 -89197125 + B1F SINE Alu 2 149 0 8 1408 27 0 0 0 chr1 107998328 107998355 -89197077 + AT_rich Low_complexity Low_complexity 1 27 0 8 1408 227 204 0 0 chr1 107998588 107998637 -89196795 + T-rich Low_complexity Low_complexity 5 53 0 8 1408 327 253 24 37 chr1 107998818 107998900 -89196532 + ID SINE ID 5 85 -139 8 1408 2531 265 72 35 chr1 107998904 107999761 -89195671 + Lx8 LINE L1 6575 7463 -10 8 1408 1356 77 14 14 chr1 107999790 108000000 -89195432 + Lx3_Mus LINE L1 5965 6174 -835 8 1408 6330 64 32 0 chr1 108000000 108000809 -89194623 + Lx3_Mus LINE L1 6175 7009 0 1 1408 552 231 82 0 chr1 108000814 108000948 -89194484 + ID_B1 SINE B4 80 224 0 2 1408 1385 109 16 0 chr1 108000974 108001166 -89194266 + B2_Mm2 SINE B2 1 195 0 3 1408 286 321 53 8 chr1 108001378 108001510 -89193922 + L1MEg LINE L1 166 303 -5939 4 1408 276 216 40 30 chr1 108001500 108001600 -89193832 + L1MEg LINE L1 2776 2876 -3270 4 1408 484 286 7 63 chr1 108001683 108001713 -89193719 + RSINE1 SINE B4 17 46 -119 5 1408 2695 53 0 9 chr1 108001713 108002055 -89193377 + L1Md_F2 LINE L1 6232 6570 -12 6 1408 484 286 7 63 chr1 108002055 108002166 -89193266 + RSINE1 SINE B4 47 150 -15 5 1408 29 47 0 0 chr1 108002175 108002218 -89193214 + AT_rich Low_complexity Low_complexity 1 43 0 7 1408 1270 112 21 16 chr1 108002221 108002411 -89193021 + B2_Mm2 SINE B2 2 192 -3 8 1408 268 221 12 94 chr1 108002851 108002936 -89192496 + PB1D10 SINE Alu 40 117 0 9 1408 725 237 48 48 chr1 108003070 108003278 -89192154 - B3 SINE B2 -8 208 1 1 1409 1462 79 26 0 chr1 108003369 108003558 -89191874 + B2_Mm2 SINE B2 1 194 -1 1 1409 401 292 133 0 chr1 108003558 108003671 -89191761 - B1F SINE Alu -21 128 1 1 1409 554 264 142 19 chr1 108003713 108003875 -89191557 - B3A SINE B2 -15 183 2 1 1409 263 248 45 53 chr1 108003875 108004007 -89191425 - L1MC LINE L1 -3110 3036 2906 1 1409 299 281 108 36 chr1 108004020 108004550 -89190882 + L1MEg LINE L1 5139 5713 -449 4 1409 279 0 0 0 chr1 108004683 108004714 -89190718 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1409 385 314 119 43 chr1 108005119 108005422 -89190010 + MLT1D LTR MaLR 21 346 -159 1 1409 336 48 0 0 chr1 108005488 108005530 -89189902 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1409 1895 253 38 23 chr1 108006448 108006484 -89188948 - MT2A LTR ERVL 0 533 497 1 1409 531 0 0 0 chr1 108006484 108006543 -89188889 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1409 1895 253 38 23 chr1 108006543 108007028 -89188404 - MT2A LTR ERVL -37 496 5 1 1409 353 290 75 0 chr1 108007410 108007517 -89187915 + PB1D10 SINE Alu 1 115 -2 2 1409 3619 162 26 42 chr1 108008560 108009563 -89185869 - Lx5 LINE L1 -775 6275 5283 2 1409 38965 45 1 5 chr1 108009561 108016242 -89179190 - L1Md_T LINE L1 0 6585 1 2 1409 381 114 152 0 chr1 108016238 108016317 -89179115 - Lx5 LINE L1 -576 5301 5211 2 1409 3607 232 46 1 chr1 108016317 108017060 -89178372 + Lx5 LINE L1 6275 7050 0 2 1409 509 309 0 16 chr1 108017141 108017269 -89178163 + ID_B1 SINE B4 79 204 -20 2 1409 612 306 59 21 chr1 108017285 108017502 -89177930 + B4A SINE B4 1 221 -71 2 1409 260 26 0 71 chr1 108017502 108017544 -89177888 + (ATAAG)n Simple_repeat Simple_repeat 2 40 0 2 1409 394 199 72 74 chr1 108017549 108017734 -89177698 + B3 SINE B2 2 216 0 2 1409 245 199 47 8 chr1 108017825 108017952 -89177480 + (CA)n Simple_repeat Simple_repeat 1 132 0 2 1409 201 114 43 43 chr1 108017952 108017998 -89177434 + (CATA)n Simple_repeat Simple_repeat 4 49 0 2 1409 471 173 39 10 chr1 108018015 108018332 -89177100 + (CA)n Simple_repeat Simple_repeat 1 326 0 3 1409 8587 52 1 7 chr1 108018507 108020258 -89175174 - L1Md_F2 LINE L1 -13 6569 4833 3 1409 24 0 0 0 chr1 108020672 108020696 -89174736 + AT_rich Low_complexity Low_complexity 1 24 0 3 1409 244 312 26 0 chr1 108020727 108020804 -89174628 - RSINE1 SINE B4 -4 161 83 3 1409 748 101 56 0 chr1 108020883 108021226 -89174206 + (TAGA)n Simple_repeat Simple_repeat 1 362 0 3 1409 381 103 0 0 chr1 108021226 108021294 -89174138 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1409 1148 24 42 0 chr1 108021298 108021466 -89173966 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 3 1409 392 194 74 46 chr1 108022207 108022315 -89173117 - Lx8 LINE L1 -444 7029 6919 3 1409 658 260 170 0 chr1 108022344 108022544 -89172888 + Lx8 LINE L1 7079 7312 -161 3 1409 547 243 96 14 chr1 108022544 108022690 -89172742 - ID_B1 SINE B4 -66 158 1 3 1409 474 263 156 0 chr1 108023504 108023683 -89171749 + B3 SINE B2 1 207 -9 4 1409 315 104 0 0 chr1 108023686 108023734 -89171698 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 1409 369 282 32 84 chr1 108023748 108023918 -89171514 + B1_Mur1 SINE Alu 1 142 -7 4 1409 257 209 0 0 chr1 108023922 108023971 -89171461 + ID4_ SINE ID 3 51 -101 4 1409 302 399 8 8 chr1 108024272 108024406 -89171026 + B4A SINE B4 5 138 -154 4 1409 529 243 181 23 chr1 108024711 108024888 -89170544 + ID_B1 SINE B4 2 206 -18 4 1409 1787 200 212 16 chr1 108025120 108025629 -89169803 - RMER20B LTR ERVK -14 613 5 4 1409 267 263 108 123 chr1 108025645 108025840 -89169592 - BLACKJACK DNA AcHobo -1270 1674 1483 4 1409 511 316 65 27 chr1 108026235 108026543 -89168889 - L1MB1 LINE L1 -22 6149 5831 4 1409 203 188 21 0 chr1 108026729 108026777 -89168655 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1409 451 269 0 86 chr1 108026893 108027056 -89168376 - RSINE1 SINE B4 -15 150 2 5 1409 238 278 68 17 chr1 108027105 108027222 -89168210 - L1M2 LINE L1 -913 5230 5108 5 1409 634 270 89 87 chr1 108027233 108027659 -89167773 - BLACKJACK DNA AcHobo -1431 1513 1087 4 1409 485 250 62 7 chr1 108027736 108027881 -89167551 + RLTR12B LTR ERVK 47 199 -329 5 1409 759 100 0 0 chr1 108027902 108028012 -89167420 + (GGAGA)n Simple_repeat Simple_repeat 2 111 0 5 1409 782 212 283 4 chr1 108028283 108028562 -89166870 - MTD LTR MaLR -14 405 49 5 1409 26 30 0 0 chr1 108029535 108029568 -89165864 + AT_rich Low_complexity Low_complexity 1 33 0 5 1409 1230 254 106 45 chr1 108029841 108030303 -89165129 - MLT1D LTR MaLR -11 494 5 5 1409 1292 157 42 0 chr1 108030333 108030549 -89164883 - URR1B DNA MER1_type 0 225 1 5 1409 298 232 37 0 chr1 108030869 108030951 -89164481 + ID SINE ID 3 87 -137 5 1409 237 83 0 0 chr1 108031013 108031049 -89164383 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 5 1409 640 281 140 0 chr1 108031463 108031691 -89163741 - Tigger7 DNA MER2_type -2227 264 5 6 1409 254 250 83 67 chr1 108032060 108032240 -89163192 + MYSERV-int LTR ERVK 4836 5018 -1532 6 1409 724 211 110 77 chr1 108032324 108032569 -89162863 + RMER10B LTR ERVL 21 273 -125 6 1409 743 158 66 115 chr1 108032569 108032763 -89162669 - RMER17C LTR ERVK 0 410 215 6 1409 645 14 0 0 chr1 108032763 108032837 -89162595 + (GGA)n Simple_repeat Simple_repeat 2 75 0 6 1409 743 212 25 84 chr1 108032837 108032964 -89162468 - RMER17C LTR ERVK -196 214 19 6 1409 703 149 0 0 chr1 108032959 108033073 -89162359 + RMER10B LTR ERVL 285 398 0 6 1409 345 178 72 56 chr1 108033073 108033198 -89162234 - Lx9 LINE L1 -15 7629 7503 6 1409 522 209 310 13 chr1 108033213 108033368 -89162064 - B3 SINE B2 -15 201 1 6 1409 462 326 98 29 chr1 108033385 108033764 -89161668 - L1MB7 LINE L1 -171 6013 5609 6 1409 443 268 192 45 chr1 108033861 108034260 -89161172 - L1M4c LINE L1 -2824 3552 3102 6 1409 584 228 9 0 chr1 108034260 108034374 -89161058 + PB1D7 SINE Alu 1 115 -5 6 1409 443 268 192 45 chr1 108034374 108034646 -89160786 - L1M4c LINE L1 -3275 3101 2782 6 1409 1265 118 21 0 chr1 108034648 108034834 -89160598 + B2_Mm2 SINE B2 1 190 -5 7 1409 286 260 26 0 chr1 108034858 108034935 -89160497 - L1MC2 LINE L1 -220 6124 6046 7 1409 311 282 111 98 chr1 108034956 108035200 -89160232 - MTEa LTR MaLR -28 351 88 7 1409 1073 201 138 50 chr1 108035261 108035601 -89159831 - ORR1D2 LTR MaLR 0 370 1 7 1409 326 250 53 18 chr1 108035703 108035874 -89159558 - L1M4c LINE L1 -4025 2359 2183 6 1409 353 306 14 63 chr1 108036007 108036150 -89159282 - ID_B1 SINE B4 -5 219 84 7 1409 2635 68 3 0 chr1 108036190 108036516 -89158916 + ORR1A2 LTR MaLR 1 327 0 7 1409 2963 26 0 11 chr1 108036676 108037025 -89158407 - L1Md_F3 LINE L1 -13 6571 6227 7 1409 266 227 162 5 chr1 108037069 108037149 -89158283 + ID_B1 SINE B4 77 165 -59 7 1409 3049 154 17 25 chr1 108037576 108038107 -89157325 - RLTR11A2 LTR ERVK 0 527 1 7 1409 262 232 17 35 chr1 108038601 108038659 -89156773 + MER20 DNA MER1_type 4 60 -159 7 1409 2969 32 29 0 chr1 108038969 108039313 -89156119 - IAPEY2_LTR LTR ERVK -3 354 1 8 1409 201 321 0 0 chr1 108039883 108039936 -89155496 + CT-rich Low_complexity Low_complexity 2 54 0 8 1409 370 275 209 36 chr1 108039968 108040217 -89155215 + B4A SINE B4 1 292 0 8 1409 385 321 18 24 chr1 108040250 108040419 -89155013 - MER5A DNA MER1_type 0 189 22 8 1409 606 204 53 0 chr1 108040675 108040788 -89154644 + MTE2b LTR MaLR 1 119 -260 8 1409 341 262 18 45 chr1 108041080 108041192 -89154240 + MTE2b LTR MaLR 1 109 -310 8 1409 763 242 0 6 chr1 108041186 108041348 -89154084 + MTE2b LTR MaLR 219 379 0 8 1409 415 333 124 86 chr1 108041569 108041940 -89153492 + MLT1E1A LTR MaLR 286 670 -10 8 1409 466 230 399 7 chr1 108042750 108043029 -89152403 - MLT1C LTR MaLR 0 467 4 8 1409 2187 100 52 0 chr1 108043170 108043480 -89151952 + ORR1A2 LTR MaLR 2 327 0 8 1409 475 324 98 27 chr1 108043484 108043709 -89151723 + B4 SINE B4 25 265 -27 8 1409 240 250 18 0 chr1 108043732 108043788 -89151644 + (CATA)n Simple_repeat Simple_repeat 3 59 0 9 1409 713 304 44 7 chr1 108043880 108044155 -89151277 + L1MB5 LINE L1 5783 6067 -107 9 1409 451 252 9 26 chr1 108044176 108044290 -89151142 + PB1D7 SINE Alu 1 112 -8 9 1409 653 303 82 22 chr1 108044302 108044569 -89150863 + Lx7 LINE L1 7097 7379 -317 9 1409 504 72 0 0 chr1 108044578 108044647 -89150785 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 1409 581 157 149 0 chr1 108044793 108044834 -89150598 - B3 SINE B2 -10 206 164 9 1409 288 0 0 0 chr1 108044834 108044866 -89150566 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1409 581 157 149 0 chr1 108044866 108044958 -89150474 - B3 SINE B2 -53 163 55 9 1409 226 222 78 16 chr1 108045981 108046045 -89149387 + B1F SINE Alu 65 132 -17 9 1409 306 0 0 0 chr1 108046046 108046080 -89149352 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1409 279 0 0 0 chr1 108046080 108046110 -89149322 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1409 317 310 0 22 chr1 108046326 108046415 -89149017 - RSINE1 SINE B4 -72 93 7 1 1409 232 246 18 0 chr1 108046702 108046759 -89148673 + B4 SINE B4 1 58 -234 1 1409 272 323 101 12 chr1 108046777 108046946 -89148486 + B4A SINE B4 107 290 -2 1 1409 200 59 29 0 chr1 108047649 108047683 -89147749 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1409 821 295 53 21 chr1 108047696 108047977 -89147455 - B4 SINE B4 -1 291 2 1 1409 237 182 46 115 chr1 108048008 108048095 -89147337 - ID4_ SINE ID 0 83 3 1 1409 306 0 0 0 chr1 108048712 108048746 -89146686 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1409 1249 97 17 0 chr1 108048837 108049012 -89146420 + B2_Mm1t SINE B2 2 179 -14 1 1409 372 122 327 27 chr1 108049064 108049174 -89146258 + B2_Mm2 SINE B2 47 189 -6 1 1409 570 29 0 0 chr1 108049251 108049319 -89146113 + (TTC)n Simple_repeat Simple_repeat 1 68 0 1 1409 1943 137 32 72 chr1 108049413 108049815 -89145617 + ORR1B1 LTR MaLR 1 386 -8 1 1409 391 277 19 102 chr1 108050026 108050183 -89145249 + ID_B1 SINE B4 81 224 0 1 1409 684 236 7 0 chr1 108050205 108050353 -89145079 + RSINE1 SINE B4 2 150 -15 1 1409 931 55 0 0 chr1 108050457 108050584 -89144848 - B1_Mm SINE Alu -20 127 1 1 1409 258 254 16 0 chr1 108050477 108050603 -89144829 - ORR1B1-int LTR MaLR -755 754 627 1 1409 269 252 71 18 chr1 108050834 108050947 -89144485 - MLT1D LTR MaLR -130 375 257 1 1409 234 0 0 0 chr1 108052663 108052689 -89142743 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1409 613 215 23 0 chr1 108052734 108052864 -89142568 + B1F SINE Alu 10 142 -7 1 1409 227 247 10 73 chr1 108053202 108053298 -89142134 - HAL1 LINE L1 -395 2112 2023 1 1409 1782 134 38 15 chr1 108053655 108054012 -89141420 - ORR1A4 LTR MaLR 0 394 1 1 1409 342 344 48 72 chr1 108054190 108054522 -89140910 - HAL1 LINE L1 -1045 1462 1139 1 1409 278 87 41 55 chr1 108054552 108054625 -89140807 + (TCTCTG)n Simple_repeat Simple_repeat 2 73 0 1 1409 345 75 0 0 chr1 108055439 108055492 -89139940 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 1 1409 448 213 100 119 chr1 108055505 108055665 -89139767 - RSINE1 SINE B4 0 165 9 1 1409 295 314 49 28 chr1 108055895 108055919 -89139513 - L1MA9 LINE L1 -7 6327 6305 1 1409 1620 186 95 23 chr1 108055919 108056265 -89139167 + ORR1D1 LTR MaLR 1 371 -3 1 1409 295 314 49 28 chr1 108056265 108056384 -89139048 - L1MA9 LINE L1 -30 6304 6181 1 1409 517 227 45 0 chr1 108056480 108056590 -89138842 + B3A SINE B2 36 150 -48 1 1409 455 245 231 59 chr1 108056626 108056912 -89138520 - L1MA9 LINE L1 -164 6148 5814 1 1409 652 73 10 0 chr1 108057216 108057312 -89138120 + B1_Mus1 SINE Alu 34 130 -18 1 1409 195 42 0 0 chr1 108057331 108057355 -89138077 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1409 506 331 109 16 chr1 108057355 108057665 -89137767 - MER67C LTR ERV1 -367 344 3 1 1409 23 0 0 0 chr1 108057943 108057966 -89137466 + AT_rich Low_complexity Low_complexity 1 23 0 1 1409 213 65 0 0 chr1 108058070 108058101 -89137331 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1409 333 0 0 0 chr1 108058118 108058155 -89137277 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1409 654 290 9 50 chr1 108058167 108058385 -89137047 - B4 SINE B4 0 292 84 1 1409 24 0 0 0 chr1 108058527 108058551 -89136881 + AT_rich Low_complexity Low_complexity 1 24 0 1 1409 294 184 0 0 chr1 108058804 108058880 -89136552 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1409 216 328 129 8 chr1 108058883 108059015 -89136417 + MIRb SINE MIR 54 201 -67 1 1409 292 242 0 0 chr1 108059047 108059113 -89136319 - MER53 DNA hAT -3 190 125 1 1409 560 249 45 30 chr1 108059148 108059341 -89136091 - B3A SINE B2 -4 212 14 1 1409 679 132 131 8 chr1 108059527 108059649 -89135783 + B1_Mus1 SINE Alu 1 137 -11 1 1409 301 55 0 52 chr1 108059682 108059740 -89135692 + (CAAAAA)n Simple_repeat Simple_repeat 6 60 0 1 1409 229 128 85 0 chr1 108060127 108060174 -89135258 - RMER15 LTR ERVL -154 421 371 1 1409 1842 144 51 11 chr1 108060749 108061100 -89134332 - ORR1C1 LTR MaLR -13 365 1 1 1409 572 277 42 69 chr1 108061206 108061234 -89134198 - MER47B DNA MER2_type -173 245 220 1 1409 781 162 216 0 chr1 108061234 108061419 -89134013 - URR1B DNA MER1_type 0 225 1 1 1409 572 277 42 69 chr1 108061419 108061607 -89133825 - MER47B DNA MER2_type -199 219 35 1 1409 378 0 0 0 chr1 108062799 108062841 -89132591 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1409 440 287 37 0 chr1 108062998 108063106 -89132326 + RSINE1 SINE B4 3 114 -51 1 1409 1635 31 0 9 chr1 108063828 108064055 -89131377 - MT-int LTR MaLR -78 1020 796 1 1409 268 327 0 80 chr1 108064151 108064264 -89131168 + MLT1C LTR MaLR 352 455 -12 1 1409 388 247 0 0 chr1 108065244 108065321 -89130111 + RSINE1 SINE B4 2 78 -87 1 1409 948 48 0 0 chr1 108065361 108065487 -89129945 + (CA)n Simple_repeat Simple_repeat 2 127 0 1 1409 225 259 0 0 chr1 108065531 108065585 -89129847 + ID4_ SINE ID 29 82 -1 1 1409 743 253 105 0 chr1 108066168 108066358 -89129074 - B3 SINE B2 -6 210 1 1 1409 542 277 12 42 chr1 108066409 108066575 -89128857 - MTEa LTR MaLR -5 374 214 1 1409 300 127 91 0 chr1 108066581 108066636 -89128796 - MTEa LTR MaLR -297 82 23 1 1409 439 229 38 0 chr1 108066693 108066798 -89128634 - PB1D9 SINE Alu 0 120 12 1 1409 419 306 0 0 chr1 108066928 108067026 -89128406 - B1F2 SINE Alu -23 126 29 1 1409 21 0 0 0 chr1 108067031 108067052 -89128380 + AT_rich Low_complexity Low_complexity 1 21 0 1 1409 240 173 0 37 chr1 108067131 108067185 -89128247 - B3 SINE B2 -160 56 5 1 1409 21 36 0 0 chr1 108068645 108068673 -89126759 + GC_rich Low_complexity Low_complexity 1 28 0 1 1409 50 102 0 0 chr1 108068692 108068868 -89126564 + GC_rich Low_complexity Low_complexity 1 176 0 1 1409 201 208 21 0 chr1 108068913 108068961 -89126471 + (TCG)n Simple_repeat Simple_repeat 1 49 0 1 1409 29 47 0 0 chr1 108069473 108069516 -89125916 + GC_rich Low_complexity Low_complexity 1 43 0 1 1409 486 0 0 0 chr1 108075195 108075249 -89120183 + (CAAAC)n Simple_repeat Simple_repeat 3 56 0 1 1409 268 300 9 35 chr1 108076793 108076907 -89118525 + MIR3 SINE MIR 91 201 -7 1 1409 390 121 0 0 chr1 108077319 108077385 -89118047 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1409 246 62 0 0 chr1 108077385 108077417 -89118015 + (TAGG)n Simple_repeat Simple_repeat 3 34 0 1 1409 582 248 7 21 chr1 108077418 108077558 -89117874 - B3A SINE B2 -59 139 2 1 1409 21 0 0 0 chr1 108078221 108078242 -89117190 + AT_rich Low_complexity Low_complexity 1 21 0 1 1409 1714 21 0 0 chr1 108078266 108078457 -89116975 + B2_Mm1a SINE B2 1 191 -2 1 1409 246 179 0 0 chr1 108078683 108078739 -89116693 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 1 1409 607 255 19 19 chr1 108079821 108079977 -89115455 - B3 SINE B2 -27 189 34 1 1409 189 0 0 0 chr1 108079978 108079999 -89115433 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1409 302 239 122 22 chr1 108079999 108080089 -89115343 - B1_Mus1 SINE Alu -14 134 36 1 1409 217 158 26 0 chr1 108080109 108080147 -89115285 - B3A SINE B2 -158 40 2 1 1409 350 222 0 0 chr1 108080147 108080210 -89115222 - RSINE1 SINE B4 -96 69 7 1 1409 183 162 0 0 chr1 108080723 108080760 -89114672 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1409 358 324 33 60 chr1 108081043 108081195 -89114237 - PB1D7 SINE Alu 0 148 3 1 1409 237 309 0 127 chr1 108081195 108081230 -89114202 - ID SINE ID -146 78 60 1 1409 438 264 282 15 chr1 108081360 108081691 -89113741 - MTD LTR MaLR 0 419 1 1 1409 270 293 61 0 chr1 108081859 108081958 -89113474 - MIR SINE MIR -38 224 120 1 1409 381 283 105 50 chr1 108082311 108082549 -89112883 + MIRc SINE MIR 18 268 0 1 1409 309 153 0 0 chr1 108083189 108083261 -89112171 + (CAT)n Simple_repeat Simple_repeat 1 72 0 1 1409 180 0 0 0 chr1 108083261 108083281 -89112151 + (TCC)n Simple_repeat Simple_repeat 3 22 0 1 1409 530 219 11 27 chr1 108083638 108083821 -89111611 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1409 362 240 65 24 chr1 108085042 108085166 -89110266 + MER5A1 DNA MER1_type 37 165 -1 1 1409 476 279 150 6 chr1 108086656 108086734 -89108698 + RMER30 DNA MER1_type 5 93 -109 1 1409 195 42 0 0 chr1 108086734 108086758 -89108674 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 1 1409 476 279 150 6 chr1 108086758 108086852 -89108580 + RMER30 DNA MER1_type 94 201 -1 1 1409 1506 194 144 0 chr1 108087263 108087618 -89107814 - MTD LTR MaLR 0 419 14 1 1409 636 245 53 34 chr1 108088137 108088344 -89107088 + B3A SINE B2 1 211 -5 1 1409 343 234 218 13 chr1 108089310 108089466 -89105966 - B4A SINE B4 0 292 105 1 1409 227 132 26 0 chr1 108089689 108089727 -89105705 - tRNA-Ser-TCY tRNA tRNA -46 39 1 1 1409 264 333 37 19 chr1 108090306 108090413 -89105019 + PB1D7 SINE Alu 1 109 -11 1 1409 993 136 0 7 chr1 108092106 108092254 -89103178 - B1_Mus2 SINE Alu 0 147 1 1 1409 669 38 256 8 chr1 108092360 108092489 -89102943 + B2_Mm2 SINE B2 1 161 -34 1 1409 261 0 0 0 chr1 108092489 108092518 -89102914 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1409 378 0 0 0 chr1 108092594 108092636 -89102796 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1409 807 199 138 0 chr1 108093485 108093666 -89101766 - ID_B1 SINE B4 -4 220 15 1 1409 1280 197 78 58 chr1 108093999 108094394 -89101038 + MT2B LTR ERVL 1 546 -55 1 1409 243 79 0 0 chr1 108094394 108094432 -89101000 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1409 360 0 0 0 chr1 108094432 108094472 -89100960 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1409 1280 196 50 56 chr1 108094472 108094505 -89100927 + MT2B LTR ERVL 547 591 -10 1 1409 289 275 24 36 chr1 108095692 108095775 -89099657 - RSINE1 SINE B4 -12 153 72 1 1409 21 36 0 0 chr1 108096009 108096037 -89099395 + AT_rich Low_complexity Low_complexity 1 28 0 1 1409 928 79 7 7 chr1 108097203 108097343 -89098089 + (TCCC)n Simple_repeat Simple_repeat 3 142 0 1 1409 808 216 88 0 chr1 108097711 108097905 -89097527 - B3 SINE B2 -5 211 1 2 1409 301 197 30 0 chr1 108097905 108097971 -89097461 - ORR1E LTR MaLR -6 364 297 2 1409 454 282 42 7 chr1 108098039 108098182 -89097250 - ORR1E LTR MaLR -192 167 20 2 1409 243 0 0 0 chr1 108098412 108098439 -89096993 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1409 286 347 93 15 chr1 108099789 108099994 -89095438 - MLT1L LTR MaLR -4 606 386 2 1409 189 74 0 0 chr1 108100837 108100864 -89094568 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1409 252 0 0 0 chr1 108101336 108101364 -89094068 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1409 215 103 26 0 chr1 108101980 108102019 -89093413 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2 1409 991 249 14 5 chr1 108102336 108102550 -89092882 - B3 SINE B2 0 216 1 2 1409 457 275 61 0 chr1 108102553 108102684 -89092748 - ID_B1 SINE B4 0 224 86 2 1409 276 53 0 0 chr1 108102705 108102743 -89092689 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1409 219 69 0 0 chr1 108103119 108103148 -89092284 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1409 3282 204 118 13 chr1 108103862 108104141 -89091291 - Lx6 LINE L1 -10 7450 7145 2 1409 180 0 0 0 chr1 108104141 108104161 -89091271 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1409 3282 204 118 13 chr1 108104161 108104587 -89090845 - Lx6 LINE L1 -316 7144 6672 2 1409 3471 212 44 10 chr1 108104585 108104822 -89090610 + Lx6 LINE L1 5925 6167 -1293 2 1409 267 31 0 0 chr1 108104822 108104854 -89090578 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1409 3471 212 44 10 chr1 108104854 108105341 -89090091 + Lx6 LINE L1 6168 6673 -787 2 1409 23 0 0 0 chr1 108105541 108105564 -89089868 + AT_rich Low_complexity Low_complexity 1 23 0 2 1409 491 286 20 76 chr1 108105801 108105998 -89089434 + B4 SINE B4 50 235 -57 2 1409 447 68 0 0 chr1 108106496 108106555 -89088877 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1409 766 162 21 29 chr1 108106556 108106696 -89088736 - B1_Mus1 SINE Alu -8 140 2 2 1409 598 200 9 0 chr1 108107253 108107368 -89088064 + B3 SINE B2 1 116 -100 2 1409 316 239 29 152 chr1 108107416 108107461 -89087971 - B3A SINE B2 -1 197 170 2 1409 207 0 0 0 chr1 108107461 108107484 -89087948 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1409 316 239 29 152 chr1 108107484 108107576 -89087856 - B3A SINE B2 -29 169 77 2 1409 441 0 0 0 chr1 108108174 108108223 -89087209 + (TTCTC)n Simple_repeat Simple_repeat 1 49 0 2 1409 746 103 17 0 chr1 108108226 108108343 -89087089 + (TTTC)n Simple_repeat Simple_repeat 4 122 0 2 1409 685 174 8 37 chr1 108108374 108108508 -89086924 - B1F2 SINE Alu 0 149 25 2 1409 1772 219 132 12 chr1 108108602 108109087 -89086345 - RMER15 LTR ERVL -5 570 28 2 1409 5946 186 60 72 chr1 108111069 108113188 -89082244 - Lx5 LINE L1 -3 7055 4774 2 1409 1316 73 21 16 chr1 108113188 108113382 -89082050 - B2_Mm2 SINE B2 0 195 1 2 1409 5946 186 60 72 chr1 108113382 108113417 -89082015 - Lx5 LINE L1 -3 4773 4735 2 1409 216 0 0 0 chr1 108113417 108113441 -89081991 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1409 5597 161 61 86 chr1 108113441 108114193 -89081239 - Lx5 LINE L1 -1152 4734 4218 2 1409 802 194 50 22 chr1 108114193 108114372 -89081060 - B2_Mm2 SINE B2 -10 185 2 2 1409 3542 121 47 21 chr1 108114372 108114801 -89080631 - Lx5 LINE L1 -4161 1716 1281 2 1409 1229 197 215 0 chr1 108114802 108114887 -89080545 - RLTR16 LTR ERVK -3 502 415 2 1409 459 0 0 0 chr1 108114887 108114938 -89080494 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1409 1229 192 176 0 chr1 108114938 108115238 -89080194 - RLTR16 LTR ERVK -91 414 7 2 1409 2678 208 116 29 chr1 108115243 108116039 -89079393 - Lx5 LINE L1 -5801 1285 421 2 1409 438 311 52 26 chr1 108117040 108117195 -89078237 - RSINE1 SINE B4 -2 163 5 2 1409 1047 160 89 5 chr1 108118099 108118313 -89077119 - ORR1C1 LTR MaLR -141 237 6 2 1409 201 347 74 45 chr1 108118701 108118903 -89076529 + L2 LINE L2 2810 3017 -402 2 1409 2124 202 109 27 chr1 108120169 108120657 -89074775 - RLTR12B LTR ERVK 0 528 1 2 1409 211 157 0 38 chr1 108120817 108120870 -89074562 + (CAAAC)n Simple_repeat Simple_repeat 4 54 0 2 1409 1035 296 27 7 chr1 108121058 108121470 -89073962 - L1MA6 LINE L1 -365 5935 5516 2 1409 724 181 34 14 chr1 108121499 108121645 -89073787 - B1_Mur4 SINE Alu -1 149 1 2 1409 1067 37 0 0 chr1 108122105 108122239 -89073193 + B1_Mus1 SINE Alu 15 148 0 2 1409 619 201 210 9 chr1 108122269 108122450 -89072982 + B3A SINE B2 2 198 0 2 1409 631 181 405 10 chr1 108122522 108122811 -89072621 + MTD LTR MaLR 1 405 -14 2 1409 384 312 109 5 chr1 108123913 108124106 -89071326 - MER2 DNA MER2_type -53 292 80 2 1409 28 48 0 0 chr1 108124602 108124644 -89070788 + AT_rich Low_complexity Low_complexity 1 42 0 2 1409 493 203 44 132 chr1 108124677 108124813 -89070619 - RSINE1 SINE B4 -31 134 11 2 1409 332 223 0 47 chr1 108125170 108125297 -89070135 + CT-rich Low_complexity Low_complexity 4 124 0 2 1409 578 248 8 8 chr1 108125321 108125439 -89069993 - B1F SINE Alu -23 126 9 2 1409 545 239 32 78 chr1 108125468 108125622 -89069810 - B1_Mur3 SINE Alu 0 149 3 2 1409 347 292 55 89 chr1 108125622 108125705 -89069727 - ID SINE ID -150 74 1 2 1409 396 271 180 11 chr1 108126114 108126297 -89069135 + MER20 DNA MER1_type 3 216 -3 2 1409 635 233 197 13 chr1 108126566 108126805 -89068627 - MTD LTR MaLR 0 419 137 2 1409 3796 117 81 3 chr1 108126806 108127400 -89068032 - RMER19A LTR ERVK 0 737 98 2 1409 2448 162 124 55 chr1 108127436 108127572 -89067860 - Lx7 LINE L1 -4 7692 7521 2 1409 225 0 0 0 chr1 108127572 108127597 -89067835 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1409 2448 162 124 55 chr1 108127597 108128138 -89067294 - Lx7 LINE L1 -176 7520 6969 2 1409 617 292 35 31 chr1 108129723 108130013 -89065419 - B4A SINE B4 0 292 2 2 1409 233 230 133 33 chr1 108130270 108130360 -89065072 + MIR SINE MIR 28 126 -136 2 1409 2833 39 24 0 chr1 108130514 108130852 -89064580 - ORR1A1 LTR MaLR 0 346 1 2 1409 372 319 122 30 chr1 108131816 108132142 -89063290 - MTEa LTR MaLR 0 379 3 2 1409 1255 320 96 51 chr1 108132142 108132655 -89062777 - MTEa-int LTR MaLR -51 1529 993 2 1409 420 111 0 0 chr1 108132711 108132774 -89062658 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1409 207 0 0 0 chr1 108132786 108132809 -89062623 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1409 879 219 118 0 chr1 108132824 108133002 -89062430 - B3 SINE B2 -17 199 1 2 1409 635 321 76 59 chr1 108133007 108133348 -89062084 - MTEa-int LTR MaLR -656 924 578 2 1409 198 0 0 0 chr1 108133430 108133452 -89061980 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1409 477 290 315 44 chr1 108133550 108133943 -89061489 - MTEa-int LTR MaLR -1081 499 1 2 1409 332 325 19 53 chr1 108133943 108134098 -89061334 - MTEa LTR MaLR -12 367 204 2 1410 22 0 0 0 chr1 108134598 108134620 -89060812 + AT_rich Low_complexity Low_complexity 1 22 0 2 1410 562 238 54 27 chr1 108134627 108134774 -89060658 + RSINE1 SINE B4 3 153 -12 2 1410 291 54 0 0 chr1 108134842 108134879 -89060553 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 2 1410 384 175 238 0 chr1 108134885 108134965 -89060467 - PB1D9 SINE Alu -5 115 17 2 1410 216 0 0 0 chr1 108135025 108135049 -89060383 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1410 875 219 216 28 chr1 108136705 108137024 -89058408 + MTEa LTR MaLR 1 379 0 2 1410 187 288 33 33 chr1 108139109 108139170 -89056262 + L4 LINE RTE 1078 1138 -891 2 1410 441 0 0 0 chr1 108139390 108139439 -89055993 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1410 396 0 0 0 chr1 108139439 108139482 -89055950 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1410 816 189 0 0 chr1 108139482 108139715 -89055717 + (CAG)n Simple_repeat Simple_repeat 1 233 0 2 1410 424 325 17 0 chr1 108139735 108139852 -89055580 - RSINE1 SINE B4 -43 122 4 2 1410 239 54 27 0 chr1 108139860 108139897 -89055535 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1410 198 319 43 0 chr1 108140373 108140442 -89054990 - MIRb SINE MIR -2 266 195 2 1410 252 233 32 32 chr1 108140470 108140532 -89054900 - MIR SINE MIR -193 69 8 2 1410 7173 83 16 8 chr1 108140784 108142587 -89052845 + L1VL2 LINE L1 9 1826 -1789 2 1410 278 240 0 51 chr1 108142725 108142804 -89052628 - PB1D10 SINE Alu 0 117 43 2 1410 1133 68 0 7 chr1 108143194 108143342 -89052090 - B1_Mm SINE Alu 0 147 1 2 1410 29904 114 9 14 chr1 108143803 108148359 -89047073 + L1_Mus1 LINE L1 535 5099 -784 2 1410 1002 73 80 0 chr1 108148359 108148496 -89046936 + B1_Mus1 SINE Alu 1 148 0 2 1410 29904 83 4 6 chr1 108148496 108150002 -89045430 + L1_Mus1 LINE L1 5100 6567 0 2 1410 21 0 0 0 chr1 108150045 108150066 -89045366 + AT_rich Low_complexity Low_complexity 1 21 0 2 1410 304 307 27 0 chr1 108150183 108150195 -89045237 - ID SINE ID -140 84 8 2 1410 350 254 0 0 chr1 108150195 108150258 -89045174 - ID4_ SINE ID -13 70 8 2 1410 480 228 13 9 chr1 108150742 108150852 -89044580 + B3 SINE B2 2 113 -80 2 1410 9337 84 17 16 chr1 108150987 108152392 -89043040 - Lx3_Mus LINE L1 -6 7003 5598 2 1410 898 77 41 14 chr1 108152378 108152466 -89042966 - Lx3_Mus LINE L1 -1058 4828 4741 2 1410 291 28 0 0 chr1 108152466 108152502 -89042930 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1410 898 77 41 14 chr1 108152502 108152558 -89042874 - Lx3_Mus LINE L1 -1146 4740 4680 2 1410 1570 259 30 27 chr1 108152855 108153256 -89042176 + MTD LTR MaLR 4 405 -14 2 1410 5959 142 19 11 chr1 108154331 108155368 -89040064 - Lx2B LINE L1 -32 5854 4809 2 1410 4577 179 57 8 chr1 108155366 108156355 -89039077 + Lx2B LINE L1 5841 6877 -123 2 1410 25 0 0 0 chr1 108156369 108156394 -89039038 + AT_rich Low_complexity Low_complexity 1 25 0 2 1410 501 281 150 59 chr1 108156766 108156831 -89038601 - L2a LINE L2 -25 3401 3338 2 1410 810 106 0 0 chr1 108156831 108156954 -89038478 + (TC)n Simple_repeat Simple_repeat 1 123 0 2 1410 501 281 150 59 chr1 108156954 108157175 -89038257 - L2a LINE L2 -89 3337 3089 2 1410 662 276 63 74 chr1 108157967 108158252 -89037180 + B4A SINE B4 1 282 -10 2 1410 3981 172 93 23 chr1 108158294 108159131 -89036301 + RMER19B LTR ERVK 1 896 -6 2 1410 272 302 55 114 chr1 108160417 108160619 -89034813 + YREP_Mm Unknown Unknown 123 312 -1500 2 1410 579 221 8 47 chr1 108160503 108160631 -89034801 - ID_B1 SINE B4 -26 198 76 2 1410 329 295 62 9 chr1 108160735 108160848 -89034584 - B4A SINE B4 -128 164 46 2 1410 1086 80 0 0 chr1 108161084 108161221 -89034211 + B1_Mus1 SINE Alu 2 138 -10 2 1410 187 122 41 0 chr1 108161667 108161716 -89033716 + T-rich Low_complexity Low_complexity 2 52 0 2 1410 276 229 72 39 chr1 108162293 108162422 -89033010 - MTEa LTR MaLR 0 379 253 2 1410 251 333 0 14 chr1 108162947 108163020 -89032412 - ID4_ SINE ID -11 72 1 2 1410 413 273 120 21 chr1 108163020 108163211 -89032221 - MLT1C LTR MaLR -235 232 23 3 1410 604 278 103 25 chr1 108164502 108164705 -89030727 + MLT1C LTR MaLR 220 438 -29 3 1410 549 319 87 36 chr1 108165079 108165388 -89030044 - MLT1J2 LTR MaLR -116 332 8 3 1410 639 259 15 0 chr1 108166983 108167114 -89028318 - ID_B1 SINE B4 -11 213 81 3 1410 406 289 123 27 chr1 108167339 108167485 -89027947 - RSINE1 SINE B4 0 165 6 3 1410 646 280 90 26 chr1 108168503 108168889 -89026543 + MTD LTR MaLR 1 419 -2 3 1410 204 125 0 0 chr1 108168918 108168950 -89026482 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1410 289 212 59 59 chr1 108169274 108169359 -89026073 + MER5A DNA MER1_type 97 181 -8 3 1410 750 300 138 38 chr1 108170361 108170832 -89024600 - MLT1F1 LTR MaLR -34 535 18 3 1410 369 0 0 0 chr1 108170835 108170876 -89024556 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1410 1099 103 7 0 chr1 108170970 108171115 -89024317 - B1_Mus1 SINE Alu 0 148 3 3 1410 432 279 10 0 chr1 108171116 108171220 -89024212 - B3A SINE B2 -93 105 1 3 1410 511 215 43 0 chr1 108171222 108171315 -89024117 + RSINE1 SINE B4 15 111 -54 3 1410 477 292 228 23 chr1 108171472 108171990 -89023442 + L1MEc LINE L1 359 982 -5418 3 1410 328 356 62 0 chr1 108172335 108172481 -89022951 + B4A SINE B4 1 155 -137 3 1410 519 251 173 19 chr1 108172555 108172892 -89022540 + L1MEc LINE L1 1531 1901 -4514 3 1410 267 54 0 0 chr1 108173118 108173155 -89022277 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1410 396 0 0 0 chr1 108173155 108173199 -89022233 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 3 1410 319 151 0 0 chr1 108173220 108173273 -89022159 - B3A SINE B2 -142 56 4 3 1410 324 175 0 0 chr1 108173733 108173796 -89021636 + CT-rich Low_complexity Low_complexity 2 64 0 3 1410 195 129 0 0 chr1 108174769 108174800 -89020632 + (CATG)n Simple_repeat Simple_repeat 2 32 0 3 1410 379 292 58 58 chr1 108174806 108174926 -89020506 - RSINE1 SINE B4 -41 124 5 3 1410 185 94 31 0 chr1 108175429 108175461 -89019971 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 3 1410 261 0 0 0 chr1 108175818 108175847 -89019585 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1410 1504 193 133 5 chr1 108176043 108176412 -89019020 + MTD LTR MaLR 4 419 0 3 1410 457 193 35 52 chr1 108176907 108177022 -89018410 - RSINE1 SINE B4 -10 155 43 3 1410 26 0 0 0 chr1 108177637 108177663 -89017769 + AT_rich Low_complexity Low_complexity 1 26 0 3 1410 589 231 131 39 chr1 108179190 108179343 -89016089 - ID_B1 SINE B4 -53 171 5 3 1410 710 253 32 0 chr1 108180338 108180496 -89014936 + RSINE1 SINE B4 3 165 0 3 1410 287 81 0 0 chr1 108180862 108180899 -89014533 - L1_Mus2 LINE L1 -235 6331 6295 3 1410 230 333 149 0 chr1 108181205 108181292 -89014140 - MLT1I LTR MaLR -20 391 292 3 1410 348 281 66 77 chr1 108181448 108181629 -89013803 - B4A SINE B4 0 292 114 3 1410 521 271 42 63 chr1 108182132 108182274 -89013158 - RSINE1 SINE B4 -11 154 16 3 1410 298 261 60 116 chr1 108182283 108182311 -89013121 - B2_Mm1a SINE B2 -5 188 164 3 1410 297 0 0 0 chr1 108182311 108182344 -89013088 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1410 724 248 55 11 chr1 108182344 108182514 -89012918 - B3A SINE B2 -27 171 1 3 1410 235 250 73 73 chr1 108182725 108182807 -89012625 + ID4 SINE ID 1 82 -1 3 1410 1104 102 0 33 chr1 108183068 108183084 -89012348 - B1_Mus1 SINE Alu 0 148 137 3 1410 225 0 0 0 chr1 108183084 108183109 -89012323 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 3 1410 1104 102 0 33 chr1 108183109 108183244 -89012188 - B1_Mus1 SINE Alu -12 136 2 3 1410 249 33 0 0 chr1 108183913 108183943 -89011489 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 3 1410 21 0 0 0 chr1 108183983 108184004 -89011428 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 233 264 150 90 chr1 108184004 108184088 -89011344 - Lx8 LINE L1 -51 7422 7329 3 1410 207 0 0 0 chr1 108184088 108184111 -89011321 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1410 543 16 0 0 chr1 108184111 108184174 -89011258 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1410 233 264 150 90 chr1 108184174 108184288 -89011144 - Lx8 LINE L1 -145 7328 7212 3 1410 1244 305 43 41 chr1 108184442 108184952 -89010480 + Lx9 LINE L1 6741 7251 -393 3 1410 734 184 38 1 chr1 108184981 108185116 -89010316 + B3 SINE B2 1 137 -79 3 1410 365 70 18 0 chr1 108185116 108185173 -89010259 + (AATAG)n Simple_repeat Simple_repeat 4 61 0 3 1410 419 266 57 40 chr1 108185173 108185213 -89010219 + B2_Mm1a SINE B2 130 178 -15 3 1410 293 276 117 25 chr1 108186476 108186665 -89008767 - L1MD3 LINE L1 -218 7777 7508 3 1410 525 274 88 14 chr1 108187067 108187215 -89008217 + B3 SINE B2 57 215 -1 3 1410 3895 95 16 0 chr1 108187262 108187769 -89007663 + L1_Mus3 LINE L1 6121 6635 -3 3 1410 191 267 87 29 chr1 108187833 108187937 -89007495 - L2a LINE L2 -284 3142 3033 3 1410 2379 154 11 102 chr1 108187950 108188383 -89007049 - ORR1B1 LTR MaLR 0 394 1 3 1410 221 273 121 75 chr1 108188520 108188694 -89006738 - L2a LINE L2 -673 2746 2565 3 1410 259 224 190 0 chr1 108188699 108188757 -89006675 + ID4_ SINE ID 9 77 -6 3 1410 322 202 61 41 chr1 108189272 108189370 -89006062 + B1F1 SINE Alu 9 108 -41 3 1410 24 53 0 0 chr1 108190181 108190219 -89005213 + AT_rich Low_complexity Low_complexity 1 38 0 3 1410 219 88 0 0 chr1 108190296 108190330 -89005102 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1410 42170 7 0 1 chr1 108190332 108197319 -88998113 - L1Md_A LINE L1 0 6582 1 3 1410 21 0 0 0 chr1 108197629 108197650 -88997782 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 426 151 0 0 chr1 108198040 108198113 -88997319 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1410 389 248 55 110 chr1 108198372 108198391 -88997041 - B1F SINE Alu -1 148 134 3 1410 387 0 0 0 chr1 108198391 108198434 -88996998 + (TGG)n Simple_repeat Simple_repeat 1 43 0 3 1410 389 248 55 110 chr1 108198434 108198559 -88996873 - B1F SINE Alu -16 133 12 3 1410 1288 48 0 0 chr1 108198846 108198992 -88996440 + B1_Mus1 SINE Alu 3 148 0 3 1410 541 225 49 15 chr1 108199023 108199187 -88996245 - B3A SINE B2 -11 205 2 3 1410 1217 75 0 0 chr1 108200425 108200572 -88994860 - B1_Mus1 SINE Alu 0 148 2 3 1410 1483 217 122 12 chr1 108200799 108201135 -88994297 - ORR1D1 LTR MaLR -1 373 1 3 1410 2784 181 116 41 chr1 108201190 108202370 -88993062 - ORR1D1-int LTR MaLR -93 1277 9 3 1410 1085 220 144 98 chr1 108202379 108202727 -88992705 - ORR1D1 LTR MaLR 0 374 11 3 1410 956 195 11 21 chr1 108203968 108204157 -88991275 + URR1A DNA MER1_type 40 226 0 3 1410 513 104 0 0 chr1 108205339 108205416 -88990016 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1410 698 211 35 14 chr1 108205436 108205580 -88989852 - B1_Mur1 SINE Alu -1 148 2 3 1410 1026 156 121 0 chr1 108206755 108206954 -88988478 - Lx2 LINE L1 0 6997 6775 3 1410 14591 140 57 3 chr1 108206949 108210300 -88985132 - Lx2 LINE L1 -349 6648 3092 3 1410 1192 161 113 4 chr1 108210288 108210519 -88984913 - L1VL4 LINE L1 -5840 462 207 3 1410 309 151 0 0 chr1 108210770 108210823 -88984609 + A-rich Low_complexity Low_complexity 1 53 0 3 1410 333 0 0 0 chr1 108211895 108211932 -88983500 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1410 463 290 31 46 chr1 108211948 108212078 -88983354 - B3A SINE B2 -69 129 2 3 1410 678 254 0 0 chr1 108212260 108212386 -88983046 + B3 SINE B2 1 126 -90 3 1410 291 247 0 45 chr1 108212474 108212563 -88982869 - MIRc SINE MIR -106 162 78 3 1410 279 0 0 0 chr1 108212761 108212792 -88982640 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 3 1410 225 0 0 0 chr1 108214702 108214727 -88980705 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1410 587 297 104 21 chr1 108216514 108216755 -88978677 - Lx8 LINE L1 -452 7021 6761 3 1410 342 0 0 0 chr1 108216774 108216812 -88978620 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1410 971 166 189 22 chr1 108218379 108218564 -88976868 - B3 SINE B2 0 216 1 3 1410 5374 48 43 21 chr1 108220208 108220874 -88974558 - L1Md_F2 LINE L1 0 6582 5902 3 1410 479 354 7 26 chr1 108222516 108222667 -88972765 - RSINE1 SINE B4 -17 148 1 3 1410 248 237 34 26 chr1 108224329 108224446 -88970986 + (TAAA)n Simple_repeat Simple_repeat 3 120 0 3 1410 246 219 9 17 chr1 108225366 108225421 -88970011 + ID4 SINE ID 5 57 -26 3 1410 2161 143 91 25 chr1 108226244 108226639 -88968793 - MTC LTR MaLR 0 421 1 3 1410 5768 78 23 6 chr1 108226639 108227430 -88968002 + L1Md_F2 LINE L1 5769 6572 -10 3 1410 180 0 0 0 chr1 108227470 108227490 -88967942 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 1410 863 148 7 7 chr1 108228475 108228611 -88966821 - B1_Mur3 SINE Alu 0 149 14 3 1410 430 228 50 99 chr1 108228480 108228641 -88966791 - B4A SINE B4 -70 222 70 3 1410 352 341 175 14 chr1 108228770 108228987 -88966445 - MLT1A0 LTR MaLR 0 365 114 3 1410 716 191 8 0 chr1 108229097 108229223 -88966209 - ORR1D1 LTR MaLR 0 374 248 3 1410 747 0 0 0 chr1 108229224 108229307 -88966125 + (CAGG)n Simple_repeat Simple_repeat 4 86 0 3 1410 3242 205 80 10 chr1 108229316 108229995 -88965437 + RMER19B LTR ERVK 164 889 -13 3 1410 374 226 55 36 chr1 108230017 108230127 -88965305 - ORR1D1 LTR MaLR -260 114 3 3 1410 25 75 0 0 chr1 108230223 108230276 -88965156 + AT_rich Low_complexity Low_complexity 1 53 0 3 1410 21 0 0 0 chr1 108230304 108230325 -88965107 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 298 322 126 44 chr1 108230514 108230696 -88964736 - B3A SINE B2 0 198 2 3 1410 423 0 0 0 chr1 108230729 108230776 -88964656 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1410 216 67 0 0 chr1 108231122 108231152 -88964280 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1410 286 186 17 0 chr1 108231211 108231270 -88964162 - MER33 DNA MER1_type -82 242 183 3 1410 256 359 39 0 chr1 108231496 108231599 -88963833 - MER33 DNA MER1_type -217 107 1 3 1410 647 193 65 71 chr1 108231682 108231866 -88963566 - URR1B DNA MER1_type -3 222 40 3 1410 258 286 108 8 chr1 108232399 108232519 -88962913 + MER53 DNA hAT 62 193 0 3 1410 318 359 64 37 chr1 108232717 108232905 -88962527 - Charlie1b DNA MER1_type -330 193 1 3 1410 7132 57 13 3 chr1 108233475 108234638 -88960794 - L1Md_F2 LINE L1 -12 6570 5389 4 1410 204 146 20 40 chr1 108236585 108236635 -88958797 + T-rich Low_complexity Low_complexity 5 53 0 4 1410 243 0 0 0 chr1 108236935 108236962 -88958470 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 4 1410 848 286 32 5 chr1 108236963 108237153 -88958279 - B3 SINE B2 -13 203 9 4 1410 261 191 0 14 chr1 108237192 108237261 -88958171 - Lx3C LINE L1 -3 6973 6906 4 1410 544 224 0 0 chr1 108237261 108237359 -88958073 - B1_Mur3 SINE Alu -51 98 1 4 1410 340 36 0 67 chr1 108242363 108242423 -88953009 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 1410 241 70 0 0 chr1 108243329 108243372 -88952060 + L1_Mus4 LINE L1 6592 6634 -2 4 1410 662 238 25 40 chr1 108243394 108243595 -88951837 + B3A SINE B2 1 198 0 4 1410 22 0 0 0 chr1 108243619 108243641 -88951791 + AT_rich Low_complexity Low_complexity 1 22 0 4 1410 903 320 45 8 chr1 108245057 108245325 -88950107 + B4A SINE B4 1 278 -14 4 1410 423 0 0 0 chr1 108245328 108245375 -88950057 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1410 808 262 14 9 chr1 108246741 108246953 -88948479 + B3 SINE B2 4 216 0 4 1410 1095 244 10 75 chr1 108247586 108247879 -88947553 - MTE2a LTR MaLR 0 379 106 4 1410 369 244 0 79 chr1 108247901 108247990 -88947442 - ID4_ SINE ID -1 82 1 4 1410 28 29 0 0 chr1 108249005 108249040 -88946392 + AT_rich Low_complexity Low_complexity 1 35 0 4 1410 1069 60 7 7 chr1 108249112 108249247 -88946185 + B1_Mus1 SINE Alu 2 136 -12 4 1410 672 13 0 0 chr1 108249247 108249324 -88946108 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 4 1410 778 246 26 37 chr1 108251358 108251548 -88943884 + B3A SINE B2 8 195 -3 4 1410 315 287 128 24 chr1 108251668 108251957 -88943475 + L1MC4 LINE L1 856 1174 -5041 4 1410 251 261 117 0 chr1 108252188 108252299 -88943133 + L1MC4 LINE L1 1502 1625 -4590 4 1410 963 271 28 31 chr1 108252565 108252854 -88942578 + B4A SINE B4 4 291 -1 4 1410 572 171 120 30 chr1 108253288 108253421 -88942011 - B2_Mm2 SINE B2 -8 187 43 4 1410 443 356 99 30 chr1 108253446 108253851 -88941581 + L1MC4 LINE L1 4128 4560 -1654 4 1410 305 304 112 12 chr1 108253929 108254089 -88941343 + L1MC4a LINE L1 6949 7124 -871 4 1410 462 286 23 16 chr1 108254143 108254271 -88941161 + RSINE1 SINE B4 3 131 -34 4 1410 360 303 73 0 chr1 108254454 108254619 -88940813 + L1MC4a LINE L1 7343 7519 -363 4 1410 1720 196 55 17 chr1 108254720 108255067 -88940365 - ORR1D1 LTR MaLR 0 374 15 4 1410 335 246 264 0 chr1 108255595 108255705 -88939727 + B1F SINE Alu 2 140 -9 4 1410 229 271 115 33 chr1 108256485 108256607 -88938825 + MIRm SINE MIR 21 152 -116 4 1410 21 0 0 0 chr1 108258109 108258130 -88937302 + AT_rich Low_complexity Low_complexity 1 21 0 4 1410 378 294 95 46 chr1 108258145 108258430 -88937002 - Lx8 LINE L1 -29 7444 7146 4 1410 244 409 0 6 chr1 108258434 108258611 -88936821 + C-rich Low_complexity Low_complexity 5 180 0 4 1410 265 399 0 0 chr1 108258651 108258809 -88936623 + C-rich Low_complexity Low_complexity 5 162 0 4 1410 664 305 21 18 chr1 108259089 108259373 -88936059 - Lx8 LINE L1 -302 7171 6887 4 1410 407 298 98 46 chr1 108259774 108260122 -88935310 - L1ME3A LINE L1 -15 6158 5793 4 1410 1586 27 16 0 chr1 108260284 108260471 -88934961 + B2_Mm1a SINE B2 2 191 -2 4 1410 5202 50 6 0 chr1 108261350 108262042 -88933390 + L1_Mus1 LINE L1 5926 6567 0 4 1410 609 182 7 14 chr1 108262043 108262188 -88933244 + GA-rich Low_complexity Low_complexity 4 147 0 4 1410 425 321 101 24 chr1 108262215 108262384 -88933048 + B3 SINE B2 29 210 -6 4 1410 819 221 0 0 chr1 108262536 108262685 -88932747 - B1_Mur4 SINE Alu 0 150 2 4 1410 452 278 54 23 chr1 108262737 108262866 -88932566 + B3A SINE B2 1 133 -65 4 1410 23 0 0 0 chr1 108262897 108262920 -88932512 + AT_rich Low_complexity Low_complexity 1 23 0 4 1410 489 345 60 20 chr1 108263161 108263362 -88932070 + B4A SINE B4 2 210 -82 4 1410 231 61 0 0 chr1 108263483 108263516 -88931916 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1410 372 256 0 0 chr1 108263525 108263615 -88931817 + ID4 SINE ID 10 99 -53 4 1411 360 308 143 33 chr1 108266039 108266375 -88929057 - MTEb LTR MaLR -4 375 3 4 1411 608 203 59 82 chr1 108266599 108266819 -88928613 - B3 SINE B2 0 216 2 4 1411 682 117 0 46 chr1 108267060 108267212 -88928220 + (TA)n Simple_repeat Simple_repeat 2 146 0 4 1411 223 241 12 24 chr1 108267323 108267408 -88928024 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1411 524 268 0 39 chr1 108267443 108267571 -88927861 - RSINE1 SINE B4 -38 127 5 4 1411 294 246 16 0 chr1 108267874 108267935 -88927497 - ID_B1 SINE B4 -2 222 161 4 1411 5875 234 67 18 chr1 108270311 108272380 -88923052 - Lx7 LINE L1 -274 7422 5249 4 1411 461 252 0 20 chr1 108274114 108274215 -88921217 + B1F SINE Alu 48 146 -3 4 1411 198 0 0 0 chr1 108274217 108274239 -88921193 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1411 213 274 0 0 chr1 108274578 108274629 -88920803 + B3A SINE B2 3 53 -145 4 1411 233 75 25 0 chr1 108274974 108275014 -88920418 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1411 363 243 108 0 chr1 108275111 108275222 -88920210 - Lx8 LINE L1 -169 7304 7182 4 1411 613 92 20 0 chr1 108275404 108275502 -88919930 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 4 1411 627 253 215 37 chr1 108276353 108276599 -88918833 - B4 SINE B4 -1 291 2 4 1411 426 262 49 21 chr1 108277793 108277937 -88917495 - B3A SINE B2 -47 151 4 4 1411 372 293 208 21 chr1 108277962 108278346 -88917086 - L1MEc LINE L1 -2323 3996 3541 4 1411 517 143 43 11 chr1 108278341 108278433 -88916999 - L1_Mur3 LINE L1 -287 5593 5499 4 1411 4905 176 77 28 chr1 108278436 108279367 -88916065 - L1_Mur3 LINE L1 -530 5350 4366 4 1411 417 20 0 0 chr1 108279367 108279417 -88916015 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1411 4905 176 77 28 chr1 108279417 108279638 -88915794 - L1_Mur3 LINE L1 -1515 4365 4142 4 1411 1773 203 74 11 chr1 108279627 108280061 -88915371 - L1_Mur3 LINE L1 -6425 1303 843 4 1411 248 257 91 29 chr1 108280526 108280734 -88914698 - L1MEc LINE L1 -3945 2455 2235 4 1411 728 185 13 46 chr1 108280735 108280888 -88914544 - B1_Mur3 SINE Alu -1 148 1 4 1411 267 133 0 0 chr1 108280917 108280962 -88914470 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1411 330 299 10 0 chr1 108281832 108281929 -88913503 - PB1D10 SINE Alu -19 98 1 4 1411 419 279 39 96 chr1 108282213 108282391 -88913041 + B3A SINE B2 1 168 -30 4 1411 485 168 89 0 chr1 108282450 108282551 -88912881 + B3A SINE B2 1 110 -88 4 1411 678 58 0 0 chr1 108282743 108282830 -88912602 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 4 1411 429 171 0 0 chr1 108283111 108283199 -88912233 + CT-rich Low_complexity Low_complexity 3 90 0 4 1411 234 0 0 0 chr1 108284412 108284438 -88910994 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1411 1014 60 53 7 chr1 108285024 108285174 -88910258 + B2_Mm2 SINE B2 1 157 -38 4 1411 597 94 0 0 chr1 108285174 108285259 -88910173 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 4 1411 928 237 0 0 chr1 108285338 108285532 -88909900 + Lx6 LINE L1 7266 7459 -1 4 1411 1283 57 0 28 chr1 108285646 108285828 -88909604 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 4 1411 260 338 79 0 chr1 108286947 108287086 -88908346 + MER20 DNA MER1_type 48 197 -22 4 1411 273 29 0 0 chr1 108289764 108289798 -88905634 + (CAG)n Simple_repeat Simple_repeat 1 34 0 4 1411 188 138 52 0 chr1 108289809 108289867 -88905565 + (CCCCAG)n Simple_repeat Simple_repeat 1 61 0 4 1411 1073 246 90 92 chr1 108294173 108294775 -88900657 - RLTR18B LTR ERVK -46 570 14 4 1411 271 96 0 37 chr1 108295316 108295370 -88900062 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1411 433 265 130 20 chr1 108296670 108296870 -88898562 - RMER15 LTR ERVL -1 574 353 4 1411 330 77 29 44 chr1 108298231 108298299 -88897133 + CT-rich Low_complexity Low_complexity 3 69 0 4 1411 416 264 193 36 chr1 108299019 108299325 -88896107 - ORR1E LTR MaLR -2 357 4 4 1411 900 296 75 16 chr1 108299610 108299981 -88895451 - MLT1C LTR MaLR -3 464 72 4 1411 2066 184 14 11 chr1 108300308 108300666 -88894766 - Lx3C LINE L1 -159 6817 6459 4 1411 1131 276 109 36 chr1 108300678 108301174 -88894258 + RodERV21-int LTR ERV1 450 981 -4010 4 1411 209 127 35 92 chr1 108301427 108301514 -88893918 + (CTG)n Simple_repeat Simple_repeat 1 82 0 4 1411 251 206 32 0 chr1 108301916 108301979 -88893453 + RLTR42-int LTR ERVK 911 975 -5162 4 1411 1256 41 0 0 chr1 108302035 108302182 -88893250 - B1_Mus1 SINE Alu -1 147 1 4 1411 202 189 0 0 chr1 108302204 108302241 -88893191 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1411 450 267 112 64 chr1 108302263 108302451 -88892981 + RLTR42-int LTR ERVK 1572 1768 -3754 4 1411 356 176 36 36 chr1 108302557 108302669 -88892763 + MYSERV-int LTR ERVK 5379 5490 -1060 4 1411 750 196 62 23 chr1 108302673 108302850 -88892582 - B2_Mm2 SINE B2 -10 185 2 4 1411 510 219 43 7 chr1 108303045 108303183 -88892249 + MYSERV-int LTR ERVK 6405 6547 -3 4 1411 673 204 37 28 chr1 108303187 108303404 -88892028 + RLTR15 LTR ERVK 1 219 -140 4 1411 352 77 30 15 chr1 108303427 108303493 -88891939 + RLTR15 LTR ERVK 276 342 -17 4 1411 396 242 81 64 chr1 108303590 108303762 -88891670 + MYSERV-int LTR ERVK 4962 5085 -1465 4 1411 436 62 0 45 chr1 108306612 108306679 -88888753 - ORR1C2 LTR MaLR -2 382 319 4 1411 830 146 17 6 chr1 108306693 108306865 -88888567 + GA-rich Low_complexity Low_complexity 3 176 0 4 1411 896 148 0 6 chr1 108306828 108306872 -88888560 + polypurine Low_complexity Low_complexity 3 45 0 4 1411 921 54 54 0 chr1 108306872 108307038 -88888394 + (GGGAGA)n Simple_repeat Simple_repeat 2 176 0 4 1411 896 148 0 6 chr1 108307038 108307156 -88888276 + polypurine Low_complexity Low_complexity 46 163 0 4 1411 1509 23 0 0 chr1 108307159 108307336 -88888096 + (GAGAA)n Simple_repeat Simple_repeat 3 179 0 4 1411 1385 211 30 54 chr1 108307350 108307685 -88887747 - ORR1C2 LTR MaLR -57 327 1 4 1411 233 248 100 39 chr1 108307897 108308027 -88887405 - L1MC5 LINE L1 -869 7092 6955 4 1411 985 112 0 0 chr1 108308037 108308180 -88887252 - B1_Mus1 SINE Alu 0 148 6 4 1411 2117 161 22 24 chr1 108308312 108308764 -88886668 - RLTR31A_Mm LTR ERVK 0 557 56 4 1411 191 140 20 0 chr1 108308766 108308816 -88886616 + CT-rich Low_complexity Low_complexity 2 52 0 4 1411 596 132 18 29 chr1 108308816 108308964 -88886468 - RLTR31A_Mm LTR ERVK -419 138 1 4 1411 357 0 18 36 chr1 108309542 108309597 -88885835 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1411 34811 48 3 1 chr1 108309997 108311932 -88883500 - L1Md_A LINE L1 -338 5545 3602 5 1411 3739 35 93 0 chr1 108311932 108312383 -88883049 + MT2_Mm LTR ERVL 1 493 0 5 1411 34811 68 7 8 chr1 108312383 108315568 -88879864 - L1Md_A LINE L1 -2282 3601 441 5 1411 10610 163 28 24 chr1 108315566 108316406 -88879026 - L1_Mur1 LINE L1 -607 3305 2453 5 1411 279 0 0 0 chr1 108316406 108316437 -88878995 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1411 10610 163 28 24 chr1 108316437 108316579 -88878853 - L1_Mur1 LINE L1 -1460 2452 2317 5 1411 2178 108 65 0 chr1 108316579 108316886 -88878546 + ORR1A2 LTR MaLR 1 327 0 5 1411 10610 163 28 24 chr1 108316886 108317133 -88878299 - L1_Mur1 LINE L1 -1596 2316 2062 5 1411 450 0 0 0 chr1 108317133 108317183 -88878249 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1411 10610 164 31 24 chr1 108317183 108318134 -88877298 - L1_Mur1 LINE L1 -1851 2061 1099 5 1411 396 0 0 0 chr1 108318134 108318178 -88877254 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1411 2453 176 64 28 chr1 108318178 108318481 -88876951 - L1_Mur1 LINE L1 -5884 1098 797 5 1411 766 284 5 11 chr1 108318599 108318784 -88876648 - B3A SINE B2 -13 185 2 5 1411 942 259 57 24 chr1 108319202 108319499 -88875933 - MTE2b LTR MaLR -65 314 8 5 1411 949 287 156 60 chr1 108319508 108319741 -88875691 - L1MC LINE L1 -1148 4998 4754 5 1411 333 0 0 0 chr1 108319741 108319778 -88875654 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1411 2826 38 12 3 chr1 108319778 108320117 -88875315 - ORR1A0 LTR MaLR -3 343 2 5 1411 486 0 0 0 chr1 108320120 108320174 -88875258 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1411 949 287 156 60 chr1 108320174 108320872 -88874560 - L1MC LINE L1 -1393 4753 3973 5 1411 213 39 0 0 chr1 108320875 108320901 -88874531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1411 1111 86 0 0 chr1 108320901 108321041 -88874391 - B1_Mus2 SINE Alu -7 140 1 5 1411 237 245 81 10 chr1 108321072 108321171 -88874261 - L1M5 LINE L1 -743 5403 5298 5 1411 271 298 15 15 chr1 108321197 108321330 -88874102 - L1M5 LINE L1 -908 5238 5106 5 1411 198 91 0 0 chr1 108321380 108321413 -88874019 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 1411 449 268 92 0 chr1 108321444 108321597 -88873835 - ID_B1 SINE B4 -54 170 4 5 1411 900 185 6 6 chr1 108321600 108321779 -88873653 - MTD LTR MaLR -7 412 234 5 1411 489 248 116 0 chr1 108322101 108322222 -88873210 - ID_B1 SINE B4 -6 218 84 5 1411 220 27 26 26 chr1 108323338 108323376 -88872056 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 5 1411 440 260 46 33 chr1 108323811 108323962 -88871470 + RSINE1 SINE B4 2 154 -11 5 1411 440 132 0 8 chr1 108324006 108324091 -88871341 + B1_Mur3 SINE Alu 67 147 0 5 1411 229 262 16 0 chr1 108324112 108324173 -88871259 + LTR16C LTR ERVL 178 239 -250 5 1411 423 299 102 4 chr1 108324860 108325085 -88870347 - LTR16C LTR ERVL -239 250 4 5 1411 285 159 0 0 chr1 108326185 108326248 -88869184 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 5 1411 7642 57 17 12 chr1 108326342 108327629 -88867803 - L1Md_F2 LINE L1 -6 6576 5283 5 1411 424 302 65 50 chr1 108328070 108328349 -88867083 - RLTR15 LTR ERVK -76 283 1 5 1411 5440 189 61 23 chr1 108328350 108328751 -88866681 - MYSERV-int LTR ERVK -1 6549 6115 5 1411 396 0 0 0 chr1 108328751 108328795 -88866637 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1411 5440 189 61 23 chr1 108328795 108329578 -88865854 - MYSERV-int LTR ERVK -436 6114 5321 5 1411 457 239 71 29 chr1 108329578 108329753 -88865679 - RMER4A LTR ERVK -28 557 271 5 1411 732 236 22 54 chr1 108329760 108329944 -88865488 - Lx5 LINE L1 -360 6690 6513 5 1411 489 270 46 6 chr1 108330349 108330524 -88864908 - MLT1B LTR MaLR -165 225 44 5 1411 741 241 53 5 chr1 108330787 108330975 -88864457 + ID_B1 SINE B4 1 197 -27 5 1411 296 235 0 36 chr1 108331161 108331245 -88864187 + CT-rich Low_complexity Low_complexity 5 85 0 5 1411 180 0 0 0 chr1 108331808 108331828 -88863604 + (TTA)n Simple_repeat Simple_repeat 1 20 0 5 1411 1439 106 14 9 chr1 108331837 108332057 -88863375 - Lx2 LINE L1 -2 6995 6775 5 1411 2616 81 3 11 chr1 108332057 108332408 -88863024 - Lx2 LINE L1 -354 6643 6296 5 1411 21 100 0 0 chr1 108332529 108332599 -88862833 + AT_rich Low_complexity Low_complexity 1 70 0 5 1411 23 0 0 0 chr1 108332958 108332981 -88862451 + AT_rich Low_complexity Low_complexity 1 23 0 5 1411 260 276 26 13 chr1 108332995 108333072 -88862360 + Lx8 LINE L1 7206 7283 -190 5 1411 800 263 75 10 chr1 108333212 108333412 -88862020 + B3 SINE B2 4 216 0 5 1411 911 235 101 95 chr1 108333485 108333950 -88861482 + MT2A LTR ERVL 1 601 0 5 1411 333 0 0 0 chr1 108334836 108334873 -88860559 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1411 52 85 0 0 chr1 108334985 108335114 -88860318 + AT_rich Low_complexity Low_complexity 1 129 0 5 1411 4241 189 63 14 chr1 108335116 108336089 -88859343 + L1_Mur3 LINE L1 3870 4889 -991 5 1411 457 197 76 17 chr1 108337255 108337374 -88858058 + L1_Mur3 LINE L1 4872 4997 -883 5 1411 12263 84 10 6 chr1 108337365 108339709 -88855723 - L1VL4 LINE L1 -983 2576 223 5 1411 408 328 106 50 chr1 108339743 108340260 -88855172 + L1MEd LINE L1 544 1089 -5047 5 1411 22 35 0 0 chr1 108340333 108340362 -88855070 + AT_rich Low_complexity Low_complexity 1 29 0 5 1411 244 284 88 0 chr1 108340500 108340602 -88854830 + L1MEd LINE L1 1460 1570 -4596 5 1411 7769 14 0 0 chr1 108340798 108341623 -88853809 - L1Md_A LINE L1 0 6582 5758 5 1411 530 302 128 5 chr1 108341627 108341823 -88853609 - Lx8 LINE L1 -163 7310 7091 5 1411 205 205 0 0 chr1 108341843 108341882 -88853550 + T-rich Low_complexity Low_complexity 1 39 0 5 1411 287 295 43 69 chr1 108341958 108342191 -88853241 + L1MEd LINE L1 2249 2475 -3691 5 1411 458 272 10 0 chr1 108342217 108342320 -88853112 + Lx8 LINE L1 6561 6664 -809 5 1411 1776 103 145 3 chr1 108342353 108342656 -88852776 + BGLII LTR ERVK 3 348 -73 5 1411 1540 176 164 6 chr1 108342656 108343016 -88852416 - Lx5 LINE L1 -741 6309 5893 5 1411 5475 60 0 11 chr1 108343023 108343679 -88851753 - L1_Mus2 LINE L1 0 6566 5918 5 1411 2383 36 0 0 chr1 108343679 108343958 -88851474 + L1_Mus2 LINE L1 5659 5937 -629 5 1411 3060 156 99 1 chr1 108343944 108344490 -88850942 - Lx5 LINE L1 -1145 5905 5301 5 1411 315 0 0 0 chr1 108344535 108344570 -88850862 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1411 249 298 19 19 chr1 108344570 108344676 -88850756 + GA-rich Low_complexity Low_complexity 6 111 0 5 1411 578 290 115 6 chr1 108344917 108345247 -88850185 + L1MEd LINE L1 2887 3252 -2894 5 1411 662 203 11 17 chr1 108345744 108345924 -88849508 + CT-rich Low_complexity Low_complexity 2 180 0 5 1411 332 257 40 0 chr1 108346764 108346838 -88848594 - B3 SINE B2 -139 77 1 5 1411 366 291 86 74 chr1 108348189 108348352 -88847080 - RSINE1 SINE B4 0 165 1 5 1411 220 300 43 0 chr1 108348917 108348987 -88846445 + ID SINE ID 13 85 -139 5 1411 1301 223 94 21 chr1 108349145 108349475 -88845957 + ORR1D2 LTR MaLR 6 359 -11 5 1411 468 284 71 0 chr1 108349915 108350042 -88845390 - B3 SINE B2 0 216 81 5 1411 294 331 29 71 chr1 108350116 108350137 -88845295 - ID_B1 SINE B4 -21 203 148 5 1411 381 294 0 11 chr1 108350137 108350230 -88845202 - PB1D10 SINE Alu -20 97 6 5 1411 294 331 29 71 chr1 108350230 108350256 -88845176 - ID_B1 SINE B4 -21 147 70 5 1411 1124 190 80 0 chr1 108350535 108350761 -88844671 + ORR1D1 LTR MaLR 131 374 0 5 1411 360 0 0 0 chr1 108351086 108351126 -88844306 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1411 4171 167 106 68 chr1 108351239 108352108 -88843324 + RMER19B LTR ERVK 1 902 0 5 1411 523 306 15 0 chr1 108352828 108352962 -88842470 + RSINE1 SINE B4 2 137 -28 5 1411 531 0 0 0 chr1 108352965 108353024 -88842408 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1411 405 129 0 0 chr1 108353024 108353093 -88842339 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1411 24 67 0 0 chr1 108353176 108353221 -88842211 + AT_rich Low_complexity Low_complexity 1 45 0 5 1411 505 218 19 19 chr1 108353232 108353335 -88842097 + PB1D7 SINE Alu 10 112 -8 5 1411 31 82 0 0 chr1 108353335 108353408 -88842024 + AT_rich Low_complexity Low_complexity 1 73 0 5 1411 660 264 30 61 chr1 108353425 108353590 -88841842 - RSINE1 SINE B4 0 165 6 5 1411 194 61 39 39 chr1 108353603 108353654 -88841778 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1411 217 312 51 20 chr1 108353693 108353791 -88841641 - PB1D7 SINE Alu 0 120 20 5 1411 1155 279 53 14 chr1 108354021 108354515 -88840917 - Charlie2a DNA MER1_type -59 2802 2290 5 1411 352 259 38 146 chr1 108354542 108354727 -88840705 - Charlie2a DNA MER1_type -914 1947 1783 5 1411 319 325 137 24 chr1 108354755 108354960 -88840472 + ORR1E LTR MaLR 18 245 -114 5 1411 1243 108 103 0 chr1 108354935 108355130 -88840302 - URR1A DNA MER1_type -10 216 2 5 1411 302 0 26 0 chr1 108355197 108355235 -88840197 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 5 1411 358 259 98 46 chr1 108355244 108355418 -88840014 + RLTR15 LTR ERVK 6 188 -171 5 1411 328 273 47 93 chr1 108355425 108355704 -88839728 + RLTR15 LTR ERVK 79 344 -15 5 1411 543 31 0 0 chr1 108355705 108355770 -88839662 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 5 1411 499 264 38 31 chr1 108355933 108356093 -88839339 - Charlie2a DNA MER1_type -1216 1645 1485 5 1411 330 307 0 0 chr1 108356817 108356905 -88838527 - ID_B1 SINE B4 -8 216 129 5 1411 238 277 31 0 chr1 108357076 108357141 -88838291 - B3A SINE B2 -128 70 4 5 1411 587 221 33 0 chr1 108358226 108358348 -88837084 + Lx8 LINE L1 6828 6953 -520 5 1411 2026 287 75 11 chr1 108359097 108359791 -88835641 + Lx8 LINE L1 6355 7121 -352 5 1411 189 0 0 0 chr1 108359791 108359812 -88835620 + (CAAG)n Simple_repeat Simple_repeat 1 21 0 5 1411 1482 311 138 21 chr1 108359812 108360046 -88835386 + Lx8 LINE L1 7110 7384 -89 5 1411 2856 81 46 15 chr1 108360057 108360332 -88835100 + Lx2 LINE L1 6596 6866 -131 5 1411 225 0 0 0 chr1 108360332 108360357 -88835075 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 1411 2856 81 46 15 chr1 108360357 108360471 -88834961 + Lx2 LINE L1 6867 6995 -2 5 1411 1487 100 96 74 chr1 108360791 108361062 -88834370 + ORR1A4 LTR MaLR 1 277 -52 5 1411 279 190 0 0 chr1 108363093 108363151 -88832281 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1411 459 281 133 77 chr1 108363218 108363675 -88831757 - RLTR16 LTR ERVK -150 542 1 5 1411 784 242 6 0 chr1 108363701 108363862 -88831570 - RSINE1 SINE B4 -2 163 2 5 1411 602 247 241 0 chr1 108363897 108364067 -88831365 - B3 SINE B2 -5 211 1 5 1411 322 328 15 59 chr1 108365058 108365194 -88830238 + RSINE1 SINE B4 21 150 -15 5 1411 435 38 0 0 chr1 108365196 108365249 -88830183 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1411 661 226 92 30 chr1 108365788 108365952 -88829480 - B4A SINE B4 0 292 119 5 1411 429 272 9 19 chr1 108366807 108366912 -88828520 - B4A SINE B4 -179 113 10 5 1411 945 239 45 5 chr1 108366948 108367150 -88828282 - B3 SINE B2 -5 211 2 5 1411 353 268 72 0 chr1 108367159 108367256 -88828176 - PB1D10 SINE Alu -8 109 6 6 1411 806 182 12 0 chr1 108368226 108368340 -88827092 + polypyrimidine Low_complexity Low_complexity 57 172 0 6 1411 1088 122 0 16 chr1 108368340 108368523 -88826909 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1411 806 182 12 0 chr1 108368523 108368578 -88826854 + polypyrimidine Low_complexity Low_complexity 2 56 0 6 1411 194 91 30 0 chr1 108368583 108368616 -88826816 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 6 1411 667 244 7 0 chr1 108369136 108369271 -88826161 + B3 SINE B2 75 210 -6 6 1411 279 287 28 22 chr1 108369552 108369775 -88825657 + (TCTTG)n Simple_repeat Simple_repeat 1 224 0 6 1411 295 282 28 22 chr1 108369797 108369975 -88825457 + (TCTTG)n Simple_repeat Simple_repeat 2 180 0 6 1411 276 309 0 22 chr1 108369988 108370170 -88825262 + CT-rich Low_complexity Low_complexity 2 179 0 6 1411 279 287 28 22 chr1 108370117 108370295 -88825137 + (TCTTG)n Simple_repeat Simple_repeat 2 180 0 6 1411 305 294 0 38 chr1 108370311 108370495 -88824937 + CT-rich Low_complexity Low_complexity 3 179 0 6 1411 420 134 10 20 chr1 108370718 108370817 -88824615 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1411 273 333 278 22 chr1 108370829 108371059 -88824373 - B4A SINE B4 0 292 4 6 1411 243 282 0 167 chr1 108371165 108371267 -88824165 + MLT1C LTR MaLR 59 143 -324 6 1411 1116 228 46 69 chr1 108371268 108371633 -88823799 - ORR1E LTR MaLR 0 370 1 6 1411 310 308 59 15 chr1 108371633 108371768 -88823664 + MLT1C LTR MaLR 141 281 -186 6 1411 356 299 16 137 chr1 108371922 108372104 -88823328 + B4A SINE B4 116 275 -17 6 1411 491 82 0 14 chr1 108372134 108372208 -88823224 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1411 815 293 96 36 chr1 108372212 108372711 -88822721 + L1ME1 LINE L1 5474 6002 -177 6 1411 303 146 0 0 chr1 108372829 108372884 -88822548 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1411 564 247 56 101 chr1 108372900 108373098 -88822334 - B3A SINE B2 -5 193 5 6 1411 315 0 0 0 chr1 108373924 108373959 -88821473 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1411 562 250 28 35 chr1 108374036 108374181 -88821251 - B1F SINE Alu -1 148 5 6 1411 189 316 13 13 chr1 108374302 108374379 -88821053 - MIRb SINE MIR -138 130 54 6 1411 759 271 161 21 chr1 108375075 108375361 -88820071 - MLT1A0 LTR MaLR -23 342 17 6 1411 1776 216 33 3 chr1 108375460 108375827 -88819605 - ORR1C1 LTR MaLR 0 378 1 6 1411 591 15 0 0 chr1 108376020 108376088 -88819344 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1411 592 220 38 30 chr1 108377018 108377149 -88818283 - B1_Mur1 SINE Alu -1 148 17 6 1411 225 0 0 0 chr1 108377277 108377302 -88818130 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1411 1669 194 66 42 chr1 108377403 108377796 -88817636 + MTD LTR MaLR 18 398 -21 6 1411 853 238 99 104 chr1 108377822 108378206 -88817226 + MTC LTR MaLR 1 382 -39 6 1411 1865 274 46 32 chr1 108378502 108379125 -88816307 + Lx9 LINE L1 6029 6809 -835 6 1411 802 256 82 0 chr1 108380046 108380241 -88815191 - ID_B1 SINE B4 -8 216 6 6 1411 278 278 62 23 chr1 108380360 108380489 -88814943 - L1M5 LINE L1 -1481 4665 4532 6 1411 4257 99 23 0 chr1 108380887 108381451 -88813981 - L1_Mus4 LINE L1 -10 6626 6050 6 1411 26052 142 18 21 chr1 108381451 108382273 -88813159 - L1VL4 LINE L1 -192 5691 4845 6 1411 380 19 39 0 chr1 108382273 108382325 -88813107 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1411 26052 142 18 21 chr1 108382325 108383882 -88811550 - L1VL4 LINE L1 -1039 4844 3300 6 1411 261 0 0 0 chr1 108383882 108383911 -88811521 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1411 26052 160 19 21 chr1 108383911 108386706 -88808726 - L1VL4 LINE L1 -2584 3299 536 6 1411 1229 293 30 59 chr1 108386731 108386909 -88808523 - Lx9 LINE L1 -156 7488 7321 6 1411 2944 75 0 0 chr1 108386909 108387255 -88808177 - ORR1A1 LTR MaLR 0 346 1 6 1411 1229 293 30 59 chr1 108387255 108387551 -88807881 - Lx9 LINE L1 -324 7320 7028 6 1411 329 281 24 5 chr1 108387567 108387775 -88807657 + CT-rich Low_complexity Low_complexity 1 212 0 6 1411 620 102 0 10 chr1 108387776 108387875 -88807557 + (TCC)n Simple_repeat Simple_repeat 2 99 0 6 1411 1143 265 27 3 chr1 108387876 108388171 -88807261 - Lx9 LINE L1 -636 7008 6707 6 1411 231 36 0 0 chr1 108391042 108391070 -88804362 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1411 1061 200 23 19 chr1 108391077 108391291 -88804141 + B3 SINE B2 2 216 0 6 1411 357 24 0 0 chr1 108391393 108391435 -88803997 + (TTG)n Simple_repeat Simple_repeat 1 42 0 6 1411 797 161 47 12 chr1 108391544 108391738 -88803694 - B2_Mm2 SINE B2 -4 212 3 6 1411 532 231 97 0 chr1 108391840 108391974 -88803458 - B1_Mur3 SINE Alu -1 148 2 6 1411 530 207 269 41 chr1 108391994 108392165 -88803267 - B3 SINE B2 -6 210 1 6 1411 233 198 0 0 chr1 108392819 108392869 -88802563 - L1MB8 LINE L1 -9 6175 6125 6 1411 228 298 0 0 chr1 108392922 108393036 -88802396 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1411 264 280 23 47 chr1 108393038 108393124 -88802308 - RSINE1 SINE B4 0 165 82 6 1411 373 300 9 35 chr1 108393182 108393296 -88802136 - B4A SINE B4 -173 119 9 6 1411 921 274 104 46 chr1 108393310 108393850 -88801582 - L1MB8 LINE L1 -47 6131 5561 6 1411 252 210 32 0 chr1 108393846 108393908 -88801524 + L1MB5 LINE L1 5870 5933 -241 6 1411 969 291 20 3 chr1 108394006 108394303 -88801129 - MTE2b LTR MaLR -20 359 58 6 1411 396 253 11 0 chr1 108394303 108394398 -88801034 - MTE2b LTR MaLR -281 98 3 6 1411 570 63 0 0 chr1 108395154 108395233 -88800199 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1411 1092 274 60 19 chr1 108395247 108395679 -88799753 - L1MA4A LINE L1 -373 5930 5481 6 1411 984 247 139 15 chr1 108396057 108396394 -88799038 + MTE2b LTR MaLR 1 379 0 6 1412 209 176 0 50 chr1 108396654 108396682 -88798750 + polypurine Low_complexity Low_complexity 4 29 0 6 1412 619 240 27 7 chr1 108396682 108396829 -88798603 + B1_Mur4 SINE Alu 1 150 0 6 1412 209 176 0 50 chr1 108396829 108396860 -88798572 + polypurine Low_complexity Low_complexity 30 60 0 6 1412 961 55 0 176 chr1 108397106 108397282 -88798150 - B1_Mm SINE Alu -2 145 1 6 1412 212 292 15 15 chr1 108397282 108397343 -88798089 - L3 LINE CR1 -459 4030 3969 6 1412 931 240 33 14 chr1 108397477 108397688 -88797744 + ID_B1 SINE B4 2 216 -8 6 1412 288 239 252 25 chr1 108397798 108397957 -88797475 - L3 LINE CR1 -858 3631 3437 6 1412 25 0 0 0 chr1 108398099 108398124 -88797308 + AT_rich Low_complexity Low_complexity 1 25 0 6 1412 462 193 105 0 chr1 108398898 108399012 -88796420 + B2_Mm2 SINE B2 4 129 -66 6 1412 1053 141 141 5 chr1 108399054 108399239 -88796193 + B3 SINE B2 1 210 -6 6 1412 1302 106 27 22 chr1 108399322 108399544 -88795888 + Lx LINE L1 6432 6654 0 6 1412 461 331 20 7 chr1 108400171 108400320 -88795112 + RSINE1 SINE B4 5 155 -10 6 1412 918 226 93 35 chr1 108401871 108402215 -88793217 - Lx9 LINE L1 -4 7640 7277 6 1412 342 0 0 0 chr1 108402766 108402804 -88792628 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1412 245 226 16 16 chr1 108402815 108402878 -88792554 + CT-rich Low_complexity Low_complexity 1 63 0 6 1412 258 56 0 0 chr1 108404010 108404046 -88791386 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1412 201 238 31 16 chr1 108404070 108404134 -88791298 + (GTATG)n Simple_repeat Simple_repeat 1 65 0 6 1412 250 161 40 48 chr1 108404240 108404364 -88791068 + (GTATG)n Simple_repeat Simple_repeat 1 123 0 6 1412 280 88 0 34 chr1 108404492 108404551 -88790881 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1412 324 388 62 17 chr1 108404778 108405019 -88790413 - MLT1C LTR MaLR -1 466 215 6 1412 283 279 75 19 chr1 108405133 108405239 -88790193 - B3A SINE B2 -33 165 54 6 1412 338 280 6 6 chr1 108405530 108405638 -88789794 - B3A SINE B2 -107 109 2 6 1412 273 57 0 0 chr1 108405653 108405688 -88789744 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1412 6541 69 12 25 chr1 108405849 108407286 -88788146 + L1VL4 LINE L1 348 1763 -1796 6 1412 3488 123 20 2 chr1 108407285 108408003 -88787429 + Lx2 LINE L1 5317 6042 -955 6 1412 281 254 14 14 chr1 108408924 108408996 -88786436 - ID4_ SINE ID -11 72 1 6 1412 961 68 0 169 chr1 108409019 108409197 -88786235 + B1_Mus1 SINE Alu 1 148 0 6 1412 293 287 55 18 chr1 108409220 108409236 -88786196 - ID_B1 SINE B4 -32 192 83 6 1412 310 281 11 11 chr1 108409236 108409326 -88786106 - PB1D10 SINE Alu -26 91 2 6 1412 261 0 0 0 chr1 108410733 108410762 -88784670 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1412 1642 240 66 5 chr1 108411350 108411743 -88783689 - MTD LTR MaLR -2 417 1 6 1412 255 269 136 37 chr1 108412054 108412135 -88783297 - 5S rRNA rRNA -32 89 1 6 1412 315 296 8 17 chr1 108412962 108413079 -88782353 + PB1D10 SINE Alu 2 117 0 6 1412 482 262 86 152 chr1 108413208 108413369 -88782063 + B3A SINE B2 2 160 -38 6 1412 366 23 0 0 chr1 108413369 108413412 -88782020 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1412 345 24 0 0 chr1 108413412 108413453 -88781979 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1412 287 262 86 152 chr1 108413453 108413488 -88781944 + B2_Mm2 SINE B2 159 185 -10 6 1412 335 233 14 0 chr1 108413557 108413630 -88781802 - ID4 SINE ID -9 74 1 6 1412 242 229 33 0 chr1 108414011 108414133 -88781299 + (TG)n Simple_repeat Simple_repeat 2 127 0 6 1412 1620 0 0 0 chr1 108416342 108416522 -88778910 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1412 451 260 98 59 chr1 108416770 108416974 -88778458 - MLT1A LTR MaLR -5 369 158 6 1412 185 65 32 0 chr1 108417011 108417042 -88778390 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 6 1412 296 299 14 95 chr1 108417137 108417285 -88778147 - ID_B1 SINE B4 -16 208 73 6 1412 564 248 14 57 chr1 108417306 108417426 -88778006 + RSINE1 SINE B4 1 115 -50 6 1412 357 24 0 0 chr1 108417426 108417468 -88777964 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1412 564 248 14 57 chr1 108417468 108417488 -88777944 + RSINE1 SINE B4 116 135 -30 6 1412 227 388 22 15 chr1 108417525 108417661 -88777771 - MLT1A LTR MaLR -226 139 3 6 1412 222 37 0 0 chr1 108418056 108418083 -88777349 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1412 213 137 59 0 chr1 108419152 108419203 -88776229 + A-rich Low_complexity Low_complexity 6 59 0 6 1412 198 167 0 0 chr1 108419792 108419828 -88775604 + CT-rich Low_complexity Low_complexity 1 36 0 7 1412 312 312 155 8 chr1 108420659 108420788 -88774644 + B4 SINE B4 1 148 -144 7 1412 393 39 0 0 chr1 108420805 108420856 -88774576 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 7 1412 270 0 0 0 chr1 108420975 108421005 -88774427 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1412 459 0 0 0 chr1 108421005 108421055 -88774377 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1412 237 319 72 29 chr1 108421493 108421632 -88773800 - MER3 DNA MER1_type -19 190 46 7 1412 180 0 0 0 chr1 108421935 108421955 -88773477 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1412 282 73 0 0 chr1 108422363 108422404 -88773028 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1412 405 0 0 0 chr1 108422404 108422448 -88772984 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1412 785 294 116 8 chr1 108422644 108422997 -88772435 + MLT1D LTR MaLR 1 391 -114 7 1412 945 327 58 29 chr1 108423686 108424206 -88771226 + MER89 LTR ERV1 25 559 0 7 1412 821 277 5 14 chr1 108427050 108427259 -88768173 - ID_B1 SINE B4 -17 207 1 7 1412 404 348 101 30 chr1 108427498 108427904 -88767528 + LTR40b LTR ERVL 1 435 -27 7 1412 489 188 0 47 chr1 108427928 108428034 -88767398 - B1_Mur2 SINE Alu 0 149 49 7 1412 318 237 0 0 chr1 108428372 108428490 -88766942 + (CA)n Simple_repeat Simple_repeat 1 118 0 7 1412 270 0 0 0 chr1 108428957 108428987 -88766445 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1412 1141 29 7 0 chr1 108428987 108429124 -88766308 - B1_Mm SINE Alu -9 138 1 7 1412 1661 67 54 4 chr1 108429138 108429378 -88766054 - L1_Mus3 LINE L1 -4 6634 6383 7 1412 2563 140 24 24 chr1 108429709 108430132 -88765300 + Lx2A1 LINE L1 6581 7003 -5 7 1412 504 252 9 9 chr1 108430549 108430665 -88764767 - PB1D10 SINE Alu -1 116 1 7 1412 541 274 0 8 chr1 108431059 108431177 -88764255 + RSINE1 SINE B4 8 124 -41 7 1412 432 0 0 0 chr1 108431178 108431226 -88764206 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1412 212 100 25 0 chr1 108431376 108431416 -88764016 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 7 1412 1235 61 0 0 chr1 108431416 108431563 -88763869 - B1_Mm SINE Alu 0 147 1 7 1412 928 197 65 10 chr1 108432113 108432313 -88763119 + B3 SINE B2 6 216 0 7 1412 316 316 96 22 chr1 108432466 108432602 -88762830 + RSINE1 SINE B4 9 154 -11 7 1412 22 0 0 0 chr1 108432624 108432646 -88762786 + AT_rich Low_complexity Low_complexity 1 22 0 7 1412 245 298 39 87 chr1 108432695 108432901 -88762531 - Charlie2b DNA MER1_type -129 2653 2458 7 1412 1048 214 48 93 chr1 108432905 108433368 -88762064 - RMER10A LTR ERVL 0 442 1 7 1412 1289 236 27 97 chr1 108434142 108434545 -88760887 + MTE2a LTR MaLR 3 377 -2 7 1412 225 0 0 0 chr1 108438294 108438319 -88757113 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1412 495 0 0 0 chr1 108439671 108439726 -88755706 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1412 296 339 36 0 chr1 108440351 108440463 -88754969 - MIRb SINE MIR -16 252 137 7 1412 211 65 0 0 chr1 108440640 108440671 -88754761 - MIRb SINE MIR -183 85 55 7 1412 437 325 16 0 chr1 108440703 108440829 -88754603 - B4A SINE B4 -163 129 2 7 1412 230 386 72 0 chr1 108441303 108441456 -88753976 + MER20 DNA MER1_type 50 213 -6 7 1412 1366 87 0 16 chr1 108442940 108443126 -88752306 - B2_Mm2 SINE B2 -11 184 2 7 1412 581 221 8 0 chr1 108443159 108443281 -88752151 + B3A SINE B2 1 123 -75 7 1412 571 270 236 17 chr1 108443920 108443934 -88751498 - B4A SINE B4 -3 289 276 7 1412 369 0 0 0 chr1 108443934 108443975 -88751457 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1412 571 270 236 17 chr1 108443975 108444197 -88751235 - B4A SINE B4 -17 275 1 7 1412 276 316 80 31 chr1 108444313 108444476 -88750956 - LTR16C LTR ERVL -47 442 272 7 1412 689 272 173 16 chr1 108447127 108447433 -88747999 - ORR1E LTR MaLR 0 359 6 7 1412 2093 298 67 15 chr1 108447659 108448507 -88746925 + L1MB7 LINE L1 5282 6173 -11 7 1412 410 250 58 41 chr1 108449113 108449234 -88746198 - PB1 SINE Alu -3 124 2 7 1412 398 202 38 0 chr1 108451999 108452078 -88743354 + ID4_ SINE ID 2 83 0 7 1412 699 244 0 0 chr1 108454004 108454266 -88741166 + (TG)n Simple_repeat Simple_repeat 1 262 0 7 1412 357 260 96 0 chr1 108454537 108454641 -88740791 - PB1D7 SINE Alu 0 120 7 7 1412 587 254 0 0 chr1 108455767 108455893 -88739539 - B1_Mur1 SINE Alu -13 136 11 7 1412 261 0 0 0 chr1 108457195 108457224 -88738208 + (TTA)n Simple_repeat Simple_repeat 2 30 0 7 1412 341 329 0 0 chr1 108457486 108457562 -88737870 + RSINE1 SINE B4 3 78 -87 7 1412 258 266 31 0 chr1 108459310 108459374 -88736058 + GA-rich Low_complexity Low_complexity 1 66 0 7 1412 381 253 31 21 chr1 108459538 108459635 -88735797 - B1F1 SINE Alu -51 98 1 7 1412 245 370 71 21 chr1 108461186 108461326 -88734106 - MER20 DNA MER1_type -18 201 55 7 1412 799 296 19 67 chr1 108461326 108461594 -88733838 + B4 SINE B4 2 256 -36 7 1412 549 44 0 0 chr1 108461604 108461672 -88733760 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1412 449 172 11 0 chr1 108464447 108464540 -88730892 + GA-rich Low_complexity Low_complexity 1 94 0 7 1412 828 85 14 28 chr1 108465230 108465375 -88730057 + (GGGA)n Simple_repeat Simple_repeat 2 144 0 7 1412 294 254 14 14 chr1 108466573 108466645 -88728787 - PB1D10 SINE Alu -41 76 5 7 1412 313 318 89 25 chr1 108468400 108468604 -88726828 - MIR SINE MIR -42 226 3 7 1412 201 312 53 35 chr1 108470449 108470562 -88724870 - L2c LINE L2 -1 3386 3272 7 1412 602 126 10 0 chr1 108471697 108471800 -88723632 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 7 1412 1073 93 0 0 chr1 108473675 108473814 -88721618 - B1_Mus1 SINE Alu -9 139 1 7 1412 582 226 82 26 chr1 108474512 108474707 -88720725 - RMER15 LTR ERVL -14 561 356 7 1412 209 281 30 21 chr1 108475980 108476085 -88719347 - MIRb SINE MIR -56 206 107 7 1412 748 275 6 0 chr1 108477203 108477370 -88718062 + B3 SINE B2 2 169 -47 7 1412 535 194 201 25 chr1 108479210 108479369 -88716063 + B3 SINE B2 2 188 -28 7 1412 450 53 0 0 chr1 108479369 108479426 -88716006 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1412 22 0 0 0 chr1 108480230 108480252 -88715180 + AT_rich Low_complexity Low_complexity 1 22 0 7 1412 441 0 0 0 chr1 108480755 108480804 -88714628 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1412 324 0 0 0 chr1 108482693 108482729 -88712703 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1412 405 144 0 0 chr1 108484285 108484375 -88711057 + (TC)n Simple_repeat Simple_repeat 1 90 0 7 1412 264 30 0 0 chr1 108484375 108484408 -88711024 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1412 373 324 148 21 chr1 108485015 108485340 -88710092 - MTEa LTR MaLR -13 366 1 7 1412 613 272 91 62 chr1 108486346 108486370 -88709062 - B4 SINE B4 -2 290 273 7 1412 189 121 0 0 chr1 108486370 108486403 -88709029 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1412 613 272 91 62 chr1 108486403 108486652 -88708780 - B4 SINE B4 -20 272 9 7 1412 801 131 31 0 chr1 108486716 108486876 -88708556 + CT-rich Low_complexity Low_complexity 1 165 0 7 1412 25 0 0 0 chr1 108488871 108488896 -88706536 + AT_rich Low_complexity Low_complexity 1 25 0 7 1412 307 338 87 78 chr1 108489331 108489589 -88705843 + B4A SINE B4 2 274 -18 7 1412 255 93 0 0 chr1 108489755 108489798 -88705634 + (CAAG)n Simple_repeat Simple_repeat 2 44 0 7 1412 523 203 0 22 chr1 108489800 108489887 -88705545 + polypurine Low_complexity Low_complexity 4 88 0 7 1412 7997 47 2 6 chr1 108489887 108490867 -88704565 + L1Md_F2 LINE L1 5607 6582 0 7 1412 523 203 0 22 chr1 108490867 108490915 -88704517 + polypurine Low_complexity Low_complexity 89 136 0 7 1412 801 0 0 0 chr1 108490914 108491003 -88704429 + (GAAAA)n Simple_repeat Simple_repeat 3 91 0 7 1412 619 289 59 80 chr1 108492642 108493029 -88702403 + MTEa LTR MaLR 1 379 0 7 1412 218 314 28 47 chr1 108493063 108493170 -88702262 + L2a LINE L2 3304 3408 -18 7 1412 427 319 54 20 chr1 108493173 108493320 -88702112 + RSINE1 SINE B4 14 165 0 7 1412 219 114 0 0 chr1 108493458 108493493 -88701939 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1412 519 270 61 0 chr1 108493509 108493657 -88701775 - B3A SINE B2 -41 157 1 7 1412 31 0 0 0 chr1 108495624 108495655 -88699777 + AT_rich Low_complexity Low_complexity 1 31 0 7 1412 368 135 14 0 chr1 108496915 108496989 -88698443 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1412 348 233 11 63 chr1 108497017 108497248 -88698184 + (CA)n Simple_repeat Simple_repeat 1 219 0 7 1412 333 50 16 32 chr1 108497341 108497403 -88698029 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1412 444 202 22 0 chr1 108498531 108498620 -88696812 + PB1D9 SINE Alu 2 92 -28 7 1412 320 332 84 68 chr1 108498649 108498959 -88696473 - ORR1E LTR MaLR -1 358 44 7 1412 291 295 22 11 chr1 108499106 108499195 -88696237 + MIR3 SINE MIR 110 199 -9 7 1412 796 291 60 32 chr1 108501072 108501356 -88694076 + B4A SINE B4 1 292 0 1 1412 216 170 0 0 chr1 108501359 108501412 -88694020 + CT-rich Low_complexity Low_complexity 2 54 0 2 1412 374 253 138 13 chr1 108501546 108501698 -88693734 + L1MC LINE L1 5604 5774 -2108 3 1412 223 279 0 0 chr1 108502543 108502604 -88692828 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1412 186 263 62 62 chr1 108503612 108503693 -88691739 - L3b LINE CR1 -133 349 269 5 1412 225 0 0 0 chr1 108505099 108505124 -88690308 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1412 222 196 65 0 chr1 108505173 108505219 -88690213 + G-rich Low_complexity Low_complexity 2 50 0 7 1412 314 214 14 0 chr1 108505549 108505619 -88689813 - ERVL-B4-int LTR ERVL -3699 2015 1945 8 1412 372 306 112 41 chr1 108506645 108506685 -88688747 + B4A SINE B4 1 41 -251 9 1412 1503 176 136 6 chr1 108506685 108507016 -88688416 - ORR1D1 LTR MaLR 0 374 1 1 1412 372 306 112 41 chr1 108507016 108507244 -88688188 + B4A SINE B4 42 288 -4 9 1412 342 0 0 0 chr1 108507274 108507312 -88688120 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1412 186 43 0 0 chr1 108508752 108508775 -88686657 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1412 450 49 0 0 chr1 108510787 108510848 -88684584 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1412 639 272 51 23 chr1 108511219 108511396 -88684036 - B3 SINE B2 -5 211 30 1 1412 807 183 0 16 chr1 108511465 108511648 -88683784 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1412 270 0 0 0 chr1 108511649 108511679 -88683753 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1412 677 286 38 1 chr1 108511742 108511962 -88683470 - B4A SINE B4 -47 245 5 1 1412 442 178 83 9 chr1 108513843 108513951 -88681481 + RSINE1 SINE B4 10 125 -40 1 1412 468 0 0 0 chr1 108513952 108514004 -88681428 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1412 554 242 8 0 chr1 108515562 108515686 -88679746 + MER94 DNA AcHobo 1 125 -9 2 1412 315 161 0 0 chr1 108516066 108516122 -88679310 + GA-rich Low_complexity Low_complexity 5 60 0 2 1412 481 304 31 66 chr1 108516150 108516407 -88679025 + B4A SINE B4 1 248 -44 2 1412 270 132 0 0 chr1 108516493 108516546 -88678886 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1412 707 178 6 0 chr1 108516561 108516735 -88678697 + (CA)n Simple_repeat Simple_repeat 1 175 0 2 1412 182 118 29 0 chr1 108517101 108517135 -88678297 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 1412 625 302 89 54 chr1 108517137 108517417 -88678015 - B4A SINE B4 0 292 3 2 1412 1995 199 42 24 chr1 108517959 108518417 -88677015 + RMER4A LTR ERVK 1 466 0 2 1412 212 331 192 8 chr1 108518628 108518753 -88676679 + B1F1 SINE Alu 1 148 -1 2 1412 234 0 0 0 chr1 108518856 108518882 -88676550 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1412 301 224 10 20 chr1 108518882 108518982 -88676450 + (CATA)n Simple_repeat Simple_repeat 4 102 0 2 1412 711 287 10 49 chr1 108519446 108519651 -88675781 + RMER30 DNA MER1_type 5 201 -1 3 1412 384 338 29 5 chr1 108520146 108520351 -88675081 + HAL1 LINE L1 709 918 -1589 3 1412 468 0 0 0 chr1 108520364 108520416 -88675016 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1412 272 290 117 15 chr1 108520435 108520631 -88674801 + HAL1 LINE L1 1002 1217 -1290 3 1412 236 332 113 42 chr1 108521241 108521861 -88673571 + L1M5 LINE L1 4138 4801 -1345 3 1412 312 120 0 0 chr1 108521884 108521934 -88673498 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1412 283 243 43 0 chr1 108522782 108522852 -88672580 - MLT1A LTR MaLR -54 311 239 3 1412 313 227 27 0 chr1 108522945 108523020 -88672412 - MLT1A LTR MaLR -297 77 1 3 1412 367 246 101 42 chr1 108523318 108523437 -88671995 + B1F SINE Alu 6 131 -18 3 1412 492 59 0 0 chr1 108523442 108523510 -88671922 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1412 324 329 163 12 chr1 108524257 108524429 -88671003 - B3 SINE B2 -3 213 16 3 1412 441 0 0 0 chr1 108524443 108524492 -88670940 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1412 494 244 0 0 chr1 108524495 108524585 -88670847 - ID_B1 SINE B4 -35 189 100 4 1412 360 293 30 20 chr1 108524585 108524596 -88670836 - B1F SINE Alu -38 111 10 4 1412 432 0 0 0 chr1 108524748 108524796 -88670636 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1412 1112 244 179 5 chr1 108524882 108525311 -88670121 + RCHARR1 DNA MER1_type 26 529 -445 4 1412 534 70 0 0 chr1 108525318 108525389 -88670043 + (GGA)n Simple_repeat Simple_repeat 2 72 0 4 1412 417 335 30 6 chr1 108525919 108526087 -88669345 + L3b LINE CR1 254 425 -57 4 1413 868 222 52 19 chr1 108527952 108528163 -88667269 + ID_B1 SINE B4 1 218 -6 4 1413 182 324 105 31 chr1 108528848 108529039 -88666393 + L2c LINE L2 3183 3387 0 4 1413 492 237 130 13 chr1 108529062 108529216 -88666216 - MER58A DNA MER1_type -16 208 37 4 1413 1831 299 80 38 chr1 108529228 108529454 -88665978 + Lx8 LINE L1 6555 6796 -677 4 1413 1039 111 256 0 chr1 108529454 108529634 -88665798 + URR1A DNA MER1_type 1 226 0 5 1413 1831 299 80 38 chr1 108529634 108530179 -88665253 + Lx8 LINE L1 6797 7359 -114 4 1413 216 0 0 0 chr1 108531011 108531035 -88664397 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1413 228 288 0 63 chr1 108531366 108531429 -88664003 + B1F2 SINE Alu 2 60 -89 5 1413 185 279 13 0 chr1 108531445 108531524 -88663908 + GA-rich Low_complexity Low_complexity 3 82 0 5 1413 381 294 132 37 chr1 108532592 108532862 -88662570 - B4 SINE B4 -4 288 9 5 1413 261 253 0 0 chr1 108533126 108533213 -88662219 + GA-rich Low_complexity Low_complexity 1 87 0 5 1413 867 124 11 6 chr1 108533214 108533392 -88662040 + (GA)n Simple_repeat Simple_repeat 1 179 0 5 1413 632 275 40 12 chr1 108533974 108534147 -88661285 - B4 SINE B4 0 292 115 5 1413 192 231 0 0 chr1 108534508 108534560 -88660872 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1413 330 236 42 10 chr1 108534618 108534722 -88660710 + L1MD3 LINE L1 7886 7981 -14 5 1413 651 251 26 68 chr1 108534841 108534879 -88660553 - B3A SINE B2 0 198 172 6 1413 273 119 0 0 chr1 108534879 108534921 -88660511 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1413 651 251 26 68 chr1 108534921 108535074 -88660358 - B3A SINE B2 -27 171 15 6 1413 1795 33 0 0 chr1 108538541 108538755 -88656677 + L1Md_A LINE L1 6369 6582 0 6 1413 382 256 108 43 chr1 108539264 108539403 -88656029 + B1_Mur3 SINE Alu 1 148 -1 6 1413 185 65 32 0 chr1 108539405 108539436 -88655996 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1413 7923 119 14 3 chr1 108541681 108543751 -88651681 + Lx LINE L1 4555 6650 -4 6 1413 21 57 0 0 chr1 108544640 108544675 -88650757 + AT_rich Low_complexity Low_complexity 1 35 0 6 1413 897 231 132 8 chr1 108545587 108545844 -88649588 + B4A SINE B4 2 290 -2 6 1413 244 282 99 52 chr1 108545937 108546128 -88649304 + MLT1C LTR MaLR 253 452 -15 6 1413 216 143 0 0 chr1 108547953 108547995 -88647437 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1413 375 108 0 44 chr1 108548337 108548405 -88647027 + B1_Mus2 SINE Alu 83 147 0 7 1413 21 0 0 0 chr1 108548486 108548507 -88646925 + AT_rich Low_complexity Low_complexity 1 21 0 7 1413 234 173 0 37 chr1 108549264 108549318 -88646114 + (TTATA)n Simple_repeat Simple_repeat 3 54 0 7 1413 369 104 340 9 chr1 108551164 108551270 -88644162 - B2_Mm2 SINE B2 -8 187 47 7 1413 1045 97 9 170 chr1 108551336 108551548 -88643884 - B2_Mm1t SINE B2 -14 179 2 7 1413 1464 284 109 26 chr1 108551568 108552139 -88643293 - Lx8 LINE L1 -2 7471 6854 7 1413 443 122 20 0 chr1 108552387 108552485 -88642947 + (CAGAGA)n Simple_repeat Simple_repeat 3 102 0 7 1413 438 335 104 30 chr1 108553725 108554301 -88641131 + L1MC4a LINE L1 5256 5874 -2008 7 1413 279 203 0 0 chr1 108554512 108554576 -88640856 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 7 1413 538 348 30 30 chr1 108556298 108556565 -88638867 + B4A SINE B4 1 267 -25 7 1413 22 0 0 0 chr1 108556846 108556868 -88638564 + AT_rich Low_complexity Low_complexity 1 22 0 8 1413 274 320 113 30 chr1 108557234 108557437 -88637995 + L1MC LINE L1 5533 5752 -2130 8 1413 231 114 0 0 chr1 108557618 108557653 -88637779 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 8 1413 233 329 41 0 chr1 108557856 108557929 -88637503 - PB1D7 SINE Alu -44 76 1 8 1413 939 161 128 5 chr1 108558174 108558362 -88637070 + B3 SINE B2 1 211 -5 8 1413 583 261 118 0 chr1 108558382 108558543 -88636889 + B3A SINE B2 3 182 -16 8 1413 818 214 122 25 chr1 108558579 108558776 -88636656 + B3 SINE B2 1 216 0 8 1413 1054 272 126 14 chr1 108561007 108561512 -88633920 + L1M3 LINE L1 5216 5793 -507 8 1413 222 91 0 0 chr1 108561518 108561551 -88633881 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1413 859 180 36 30 chr1 108561804 108561970 -88633462 - B3 SINE B2 -15 201 35 8 1413 214 284 27 13 chr1 108561995 108562070 -88633362 - MIR3 SINE MIR -21 187 112 9 1413 539 324 87 74 chr1 108563964 108564095 -88631337 + L1ME3B LINE L1 4585 4719 -1427 9 1413 546 295 108 83 chr1 108564095 108564550 -88630882 + MER31B LTR ERV1 1 466 0 9 1413 593 303 128 53 chr1 108564550 108565481 -88629951 + L1ME3B LINE L1 4720 5709 -464 9 1413 263 362 52 31 chr1 108565580 108565871 -88629561 + L1ME3B LINE L1 5858 6154 -86 9 1413 1163 266 178 6 chr1 108565899 108566365 -88629067 + Lx8 LINE L1 6922 7467 -6 9 1413 202 313 209 0 chr1 108566494 108566628 -88628804 + MIRb SINE MIR 27 188 -80 9 1413 315 242 76 112 chr1 108566689 108566928 -88628504 + L1MB3 LINE L1 5220 5463 -834 9 1413 218 178 0 0 chr1 108566934 108566963 -88628469 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 1413 309 118 0 0 chr1 108566963 108567014 -88628418 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1413 218 178 0 0 chr1 108567014 108567029 -88628403 + (TA)n Simple_repeat Simple_repeat 2 16 0 9 1413 446 191 148 0 chr1 108567031 108567146 -88628286 + RCHARR1 DNA MER1_type 622 753 -221 9 1413 427 157 11 0 chr1 108567152 108567228 -88628204 + Lx3C LINE L1 691 753 -6231 1 1413 3018 167 25 16 chr1 108567331 108568132 -88627300 + Lx3C LINE L1 752 1560 -4326 1 1413 7715 126 26 9 chr1 108568129 108569388 -88626044 + Lx3C LINE L1 3518 4797 -1089 1 1413 14360 54 1 0 chr1 108569388 108571157 -88624275 + L1Md_F2 LINE L1 3816 5586 -297 1 1413 8072 52 1 15 chr1 108571158 108572163 -88623269 + L1Md_F2 LINE L1 5588 6578 -4 1 1413 23 0 0 0 chr1 108572183 108572206 -88623226 + AT_rich Low_complexity Low_complexity 1 23 0 1 1413 8990 127 27 10 chr1 108572221 108574374 -88621058 + Lx3C LINE L1 4781 6974 -2 1 1413 286 172 160 11 chr1 108574391 108574485 -88620947 + RCHARR1 DNA MER1_type 759 866 -108 9 1413 1160 254 166 12 chr1 108574518 108575134 -88620298 + L1MB3 LINE L1 5475 6170 -1 9 1413 1347 202 160 0 chr1 108577132 108577469 -88617963 - MTD LTR MaLR -28 391 1 1 1413 204 97 0 0 chr1 108577828 108577859 -88617573 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 1 1413 1186 55 7 0 chr1 108578349 108578495 -88616937 + B1_Mus1 SINE Alu 2 148 0 1 1413 357 217 0 0 chr1 108578505 108578588 -88616844 + A-rich Low_complexity Low_complexity 1 83 0 1 1413 649 281 41 18 chr1 108578597 108578767 -88616665 + B4A SINE B4 35 208 -84 1 1413 180 0 0 0 chr1 108578829 108578849 -88616583 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1413 378 0 0 0 chr1 108578850 108578892 -88616540 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1413 282 29 0 0 chr1 108578892 108578926 -88616506 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1413 758 245 161 5 chr1 108580337 108580530 -88614902 + ID_B1 SINE B4 1 223 -1 1 1413 423 38 0 0 chr1 108582267 108582320 -88613112 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 1 1413 1040 84 0 7 chr1 108582769 108582907 -88612525 - L1Md_F2 LINE L1 -603 5979 5842 1 1413 4585 67 17 5 chr1 108582907 108583507 -88611925 + L1Md_F2 LINE L1 5964 6570 -12 1 1413 303 336 27 47 chr1 108584140 108584290 -88611142 + RSINE1 SINE B4 2 148 -17 1 1413 561 226 96 56 chr1 108585777 108585955 -88609477 + B3A SINE B2 7 191 -7 1 1413 387 0 0 0 chr1 108588761 108588804 -88606628 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1413 2744 7 0 0 chr1 108588926 108589228 -88606204 - L1Md_A LINE L1 0 6582 6281 1 1413 267 236 169 0 chr1 108592059 108592148 -88603284 - Tigger15a DNA TcMar -31 684 581 1 1413 984 228 33 80 chr1 108593134 108593555 -88601877 + ORR1C2 LTR MaLR 2 381 -3 1 1413 237 299 12 98 chr1 108593623 108593786 -88601646 + B1_Mur1 SINE Alu 1 149 0 1 1413 685 225 21 7 chr1 108594652 108594795 -88600637 + B1_Mur1 SINE Alu 2 146 -3 1 1413 191 36 36 0 chr1 108595544 108595572 -88599860 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 1 1413 324 243 128 55 chr1 108596284 108596393 -88599039 - B1_Mur2 SINE Alu -23 126 10 1 1413 345 256 35 11 chr1 108596390 108596477 -88598955 - B1F SINE Alu -59 90 2 1 1413 324 0 0 0 chr1 108596789 108596825 -88598607 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1413 504 86 0 0 chr1 108596966 108597036 -88598396 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1413 1218 138 47 5 chr1 108597200 108597411 -88598021 - URR1B DNA MER1_type 0 225 6 1 1413 1037 225 9 5 chr1 108598388 108598602 -88596830 - B3 SINE B2 0 216 2 1 1413 29 90 0 0 chr1 108600418 108600496 -88594936 + AT_rich Low_complexity Low_complexity 1 78 0 1 1413 21 0 0 0 chr1 108600549 108600570 -88594862 + AT_rich Low_complexity Low_complexity 1 21 0 1 1413 2517 127 314 2 chr1 108601318 108601776 -88593656 + MT2B LTR ERVL 1 601 0 1 1413 22 35 0 0 chr1 108602096 108602125 -88593307 + AT_rich Low_complexity Low_complexity 1 29 0 1 1413 359 89 18 0 chr1 108607692 108607748 -88587684 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1413 300 27 0 0 chr1 108607748 108607784 -88587648 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1413 261 0 0 0 chr1 108608327 108608356 -88587076 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1413 227 215 24 37 chr1 108610838 108610920 -88584512 + G-rich Low_complexity Low_complexity 5 85 0 1 1413 230 143 40 20 chr1 108610867 108610917 -88584515 + (CGGGG)n Simple_repeat Simple_repeat 1 51 0 1 1413 38 45 0 54 chr1 108611015 108611108 -88584324 + GC_rich Low_complexity Low_complexity 1 88 0 1 1413 1324 91 0 6 chr1 108612591 108612767 -88582665 + B2_Mm2 SINE B2 3 177 -18 1 1413 898 276 56 5 chr1 108612981 108613217 -88582215 - ID_B1 SINE B4 -31 261 12 1 1413 351 150 0 0 chr1 108613240 108613300 -88582132 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1413 222 245 126 14 chr1 108615954 108616057 -88579375 - ID4 SINE ID -32 120 9 1 1413 376 35 35 17 chr1 108616257 108616315 -88579117 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 1413 319 312 59 54 chr1 108616328 108616514 -88578918 + MIR SINE MIR 46 232 -30 1 1413 341 256 70 45 chr1 108617121 108617321 -88578111 + L1MD LINE L1 3884 4088 -2058 1 1413 319 200 15 0 chr1 108618433 108618498 -88576934 - ID4 SINE ID -16 67 2 1 1413 222 150 0 0 chr1 108619776 108619816 -88575616 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1413 273 75 0 0 chr1 108619874 108619914 -88575518 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1413 1144 61 0 20 chr1 108619917 108620067 -88575365 - B1_Mus2 SINE Alu 0 147 1 1 1413 21 0 0 0 chr1 108620484 108620505 -88574927 + AT_rich Low_complexity Low_complexity 1 21 0 1 1413 339 221 94 145 chr1 108620967 108621126 -88574306 + L1MEg LINE L1 1905 2063 -4137 1 1413 475 243 9 18 chr1 108622033 108622142 -88573290 - PB1 SINE Alu -3 124 17 1 1413 188 375 85 35 chr1 108623084 108623225 -88572207 - L2b LINE L2 -51 3324 3177 1 1413 810 234 46 10 chr1 108623451 108623645 -88571787 + B3 SINE B2 3 203 -13 1 1413 275 336 112 0 chr1 108623655 108623780 -88571652 - B4A SINE B4 -104 188 50 1 1413 402 242 110 29 chr1 108624468 108624604 -88570828 + Charlie1a DNA MER1_type 4 150 -1305 1 1413 216 0 0 0 chr1 108624677 108624701 -88570731 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1413 821 237 101 0 chr1 108624893 108625091 -88570341 - ID_B1 SINE B4 -3 221 4 1 1413 1391 286 46 35 chr1 108625516 108625995 -88569437 + Charlie1a DNA MER1_type 791 1274 -181 1 1413 264 235 125 34 chr1 108625983 108626071 -88569361 + ID_B1 SINE B4 106 201 -23 1 1413 227 197 113 16 chr1 108626117 108626179 -88569253 + RSINE1 SINE B4 54 121 -44 1 1413 324 0 0 0 chr1 108626184 108626220 -88569212 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1413 246 32 0 0 chr1 108626414 108626445 -88568987 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1413 336 259 47 12 chr1 108626490 108626576 -88568856 - B2_Mm2 SINE B2 -106 89 1 1 1413 270 0 0 0 chr1 108626695 108626725 -88568707 + (CAG)n Simple_repeat Simple_repeat 3 32 0 1 1413 738 283 49 40 chr1 108626825 108627072 -88568360 - B4A SINE B4 0 292 44 1 1413 278 269 12 49 chr1 108627098 108627180 -88568252 - B3 SINE B2 -14 202 124 1 1413 3160 13 2 145 chr1 108627287 108627742 -88567690 + RLTR10 LTR ERVK 1 390 0 1 1413 14036 22 8 0 chr1 108627753 108629754 -88565678 + RLTR10-int LTR ERVK 41 1984 -3 1 1413 3352 21 2 42 chr1 108629756 108630162 -88565270 + RLTR10 LTR ERVK 1 390 0 1 1413 669 277 40 0 chr1 108630166 108630314 -88565118 - RSINE1 SINE B4 -6 159 6 1 1413 361 233 56 0 chr1 108630735 108630825 -88564607 + RSINE1 SINE B4 16 110 -55 1 1413 188 182 0 22 chr1 108631889 108631934 -88563498 + CT-rich Low_complexity Low_complexity 5 48 0 1 1413 264 172 0 22 chr1 108632166 108632227 -88563205 - B1F SINE Alu -1 148 70 1 1413 1146 187 33 81 chr1 108633239 108633512 -88561920 + ORR1C2 LTR MaLR 125 384 0 1 1413 328 321 74 74 chr1 108634121 108634404 -88561028 + HAL1 LINE L1 1516 1798 -709 1 1413 254 139 12 60 chr1 108634721 108634805 -88560627 + (TATG)n Simple_repeat Simple_repeat 1 80 0 1 1413 503 253 184 0 chr1 108635154 108635312 -88560120 + B4 SINE B4 101 287 -5 1 1413 241 229 15 22 chr1 108635318 108635452 -88559980 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1413 245 175 31 31 chr1 108635464 108635529 -88559903 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1413 556 129 69 0 chr1 108635598 108635699 -88559733 - URR1B DNA MER1_type -36 189 82 1 1413 436 59 23 34 chr1 108635774 108635862 -88559570 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1413 917 139 209 0 chr1 108636080 108636267 -88559165 + URR1A DNA MER1_type 1 226 0 1 1413 363 243 57 11 chr1 108636835 108636941 -88558491 - PB1D7 SINE Alu -5 112 1 1 1413 252 302 25 109 chr1 108636941 108636972 -88558460 - MT2B LTR ERVL -442 159 139 1 1413 23 54 0 0 chr1 108638669 108638706 -88556726 + AT_rich Low_complexity Low_complexity 1 37 0 1 1413 212 328 82 49 chr1 108639408 108639530 -88555902 + MIRc SINE MIR 22 147 -121 1 1413 1306 155 44 199 chr1 108640557 108640954 -88554478 + ORR1C2 LTR MaLR 33 380 -4 1 1413 565 282 42 83 chr1 108641137 108641330 -88554102 + B4A SINE B4 2 186 -106 1 1413 279 0 0 0 chr1 108641331 108641362 -88554070 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1413 852 226 91 0 chr1 108641485 108641671 -88553761 - B3 SINE B2 -8 208 6 1 1413 226 282 43 64 chr1 108641836 108641976 -88553456 + MIRb SINE MIR 114 250 -18 1 1413 658 209 220 0 chr1 108642496 108642673 -88552759 - B3 SINE B2 0 216 1 1 1413 607 248 7 7 chr1 108642797 108642939 -88552493 - B1F SINE Alu -7 142 1 1 1413 536 246 80 28 chr1 108643335 108643511 -88551921 + L1MB5 LINE L1 5947 6131 -43 1 1413 231 356 99 0 chr1 108643598 108643699 -88551733 + PB1D10 SINE Alu 3 113 -4 1 1413 285 243 57 0 chr1 108644487 108644557 -88550875 + RSINE1 SINE B4 68 141 -24 1 1413 277 274 34 143 chr1 108644527 108644646 -88550786 - PB1D7 SINE Alu -58 253 25 1 1413 2079 118 88 52 chr1 108644748 108645132 -88550300 + RMER10B LTR ERVL 1 398 0 1 1413 252 0 0 0 chr1 108645668 108645696 -88549736 + (CAG)n Simple_repeat Simple_repeat 2 29 0 1 1413 180 125 0 59 chr1 108645749 108645783 -88549649 - L3b LINE CR1 -284 198 167 1 1413 2150 204 98 47 chr1 108645830 108646421 -88549011 + RLTR19-int LTR ERVK 2387 3007 -3130 1 1413 300 287 0 72 chr1 108646434 108646573 -88548859 + RLTR19-int LTR ERVK 3202 3330 -2807 1 1413 492 166 170 119 chr1 108646573 108646826 -88548606 + RMER17C-int LTR ERVK 2609 2874 -364 1 1413 287 292 100 0 chr1 108646932 108647052 -88548380 + RMER17C-int LTR ERVK 3024 3155 -83 1 1413 1421 156 294 22 chr1 108647105 108647418 -88548014 + RMER10B LTR ERVL 1 398 0 2 1413 2842 153 32 29 chr1 108647973 108648496 -88546936 + RLTR11A LTR ERVK 4 528 0 2 1413 207 0 0 0 chr1 108648552 108648575 -88546857 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1413 389 207 47 47 chr1 108648701 108648828 -88546604 + L1MB8 LINE L1 5968 6094 -84 2 1413 243 125 0 0 chr1 108648935 108648975 -88546457 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1413 214 211 123 0 chr1 108648988 108649045 -88546387 + B4A SINE B4 11 74 -218 2 1413 21 0 0 0 chr1 108649074 108649095 -88546337 + AT_rich Low_complexity Low_complexity 1 21 0 2 1413 22 35 0 0 chr1 108650419 108650448 -88544984 + AT_rich Low_complexity Low_complexity 1 29 0 2 1413 273 217 67 0 chr1 108650548 108650608 -88544824 + ID_B1 SINE B4 150 213 -11 2 1413 431 185 11 0 chr1 108650999 108651091 -88544341 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 1413 1246 41 0 7 chr1 108651096 108651244 -88544188 - B1_Mm SINE Alu 0 147 1 2 1413 464 259 128 11 chr1 108651451 108651638 -88543794 - ID_B1 SINE B4 -15 209 1 2 1413 447 333 56 56 chr1 108652206 108652422 -88543010 + ID_B1 SINE B4 6 221 -3 2 1413 207 0 0 0 chr1 108652523 108652546 -88542886 + (C)n Simple_repeat Simple_repeat 1 23 0 2 1413 604 226 29 21 chr1 108652806 108652946 -88542486 + B1_Mur1 SINE Alu 9 149 0 2 1413 466 123 49 0 chr1 108654451 108654532 -88540900 + RMER1C Other Other 1257 1341 -1 2 1413 881 254 90 15 chr1 108654713 108654981 -88540451 - B4A SINE B4 -2 290 3 2 1413 183 343 0 14 chr1 108655754 108655825 -88539607 + MIRc SINE MIR 50 119 -149 2 1413 972 56 0 0 chr1 108656842 108656968 -88538464 - B1_Mm SINE Alu -21 126 1 2 1413 259 262 16 0 chr1 108656861 108656983 -88538449 - ORR1B1-int LTR MaLR -755 754 631 2 1413 483 223 159 6 chr1 108657008 108657184 -88538248 - L1MB8 LINE L1 -222 5956 5754 2 1413 21 0 0 0 chr1 108657891 108657912 -88537520 + AT_rich Low_complexity Low_complexity 1 21 0 2 1413 478 280 70 21 chr1 108658039 108658225 -88537207 - MER77 LTR ERVL -8 599 405 2 1413 180 111 0 0 chr1 108658385 108658412 -88537020 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1413 238 381 41 0 chr1 108658461 108658558 -88536874 - MER77 LTR ERVL -232 375 275 2 1414 549 262 25 0 chr1 108658899 108659021 -88536411 + ID_B1 SINE B4 93 217 -7 2 1414 800 254 193 80 chr1 108659242 108659756 -88535676 - Lx9 LINE L1 -31 7613 7042 2 1414 530 297 56 9 chr1 108660403 108660634 -88534798 + L1MB4 LINE L1 5464 5705 -475 2 1414 593 238 131 19 chr1 108660683 108660897 -88534535 + L1MB4 LINE L1 5940 6177 -3 2 1414 318 215 62 12 chr1 108661683 108661763 -88533669 - PB1D9 SINE Alu -30 90 7 2 1414 499 291 113 65 chr1 108663154 108663450 -88531982 + MLT1G LTR MaLR 34 324 -255 2 1414 377 271 31 10 chr1 108663962 108664141 -88531291 - B3A SINE B2 -3 192 2 2 1414 669 186 0 25 chr1 108664560 108664681 -88530751 - B1_Mus2 SINE Alu -21 126 9 2 1414 285 264 171 45 chr1 108665816 108665927 -88529505 + RSINE1 SINE B4 3 127 -38 2 1414 543 204 118 22 chr1 108666196 108666331 -88529101 + B1_Mur1 SINE Alu 2 149 0 2 1414 24 0 0 0 chr1 108666451 108666475 -88528957 + AT_rich Low_complexity Low_complexity 1 24 0 2 1414 2014 155 49 0 chr1 108666533 108666880 -88528552 + ORR1C1 LTR MaLR 8 371 -7 2 1414 2339 188 48 33 chr1 108666880 108667396 -88528036 + RLTR20B3 LTR ERVK 1 524 -53 2 1414 22 35 0 0 chr1 108667628 108667657 -88527775 + AT_rich Low_complexity Low_complexity 1 29 0 2 1414 21 36 0 0 chr1 108667697 108667725 -88527707 + AT_rich Low_complexity Low_complexity 1 28 0 2 1414 21 36 0 0 chr1 108668181 108668209 -88527223 + AT_rich Low_complexity Low_complexity 1 28 0 2 1414 594 85 0 0 chr1 108670807 108670889 -88524543 + RLTR13C2 LTR ERVK 1 82 -726 2 1414 2386 101 17 17 chr1 108670880 108671242 -88524190 + RLTR13C2 LTR ERVK 447 808 0 2 1414 1790 199 40 35 chr1 108671545 108671915 -88523517 + ORR1D1 LTR MaLR 1 372 -2 2 1414 1403 240 128 11 chr1 108671929 108672304 -88523128 + MTD LTR MaLR 1 419 0 2 1414 521 295 31 0 chr1 108674919 108675048 -88520384 - ID_B1 SINE B4 -6 218 86 2 1414 311 277 0 12 chr1 108675108 108675192 -88520240 + B1F SINE Alu 15 97 -52 2 1414 422 259 7 17 chr1 108675872 108676000 -88519432 - L1MA4A LINE L1 -378 5925 5772 2 1414 279 0 0 0 chr1 108676013 108676044 -88519388 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1414 474 211 156 0 chr1 108676307 108676435 -88518997 + B1_Mur1 SINE Alu 2 149 0 2 1414 800 268 81 64 chr1 108680097 108680380 -88515052 + B4A SINE B4 4 291 -1 2 1414 889 248 118 16 chr1 108680596 108680850 -88514582 - B4 SINE B4 -8 284 5 2 1414 401 260 26 80 chr1 108680908 108681021 -88514411 + PB1D9 SINE Alu 1 107 -13 2 1414 285 29 0 0 chr1 108681027 108681061 -88514371 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 2 1414 699 256 34 77 chr1 108681512 108681719 -88513713 + B3A SINE B2 1 198 0 2 1414 189 74 0 0 chr1 108681877 108681904 -88513528 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1414 243 236 0 0 chr1 108681945 108682017 -88513415 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1414 312 137 0 19 chr1 108682125 108682177 -88513255 + HAL1-3A_ME LINE L1 1977 2027 -831 2 1414 244 306 143 16 chr1 108682444 108682570 -88512862 - MIRb SINE MIR -114 154 13 2 1414 979 126 66 49 chr1 108682853 108683036 -88512396 - B2_Mm2 SINE B2 -8 187 2 2 1414 22 0 0 0 chr1 108683059 108683081 -88512351 + AT_rich Low_complexity Low_complexity 1 22 0 2 1414 1217 239 108 26 chr1 108683832 108684219 -88511213 + MTD LTR MaLR 1 419 0 2 1414 237 271 51 0 chr1 108686059 108686118 -88509314 - MER58A DNA MER1_type -52 172 111 2 1414 1220 62 0 20 chr1 108686119 108686268 -88509164 + B1_Mm SINE Alu 2 147 0 2 1414 183 114 0 0 chr1 108686276 108686311 -88509121 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1414 300 356 19 0 chr1 108686324 108686428 -88509004 - MER58A DNA MER1_type -118 106 1 2 1414 1175 229 58 89 chr1 108686698 108687057 -88508375 + ORR1E LTR MaLR 1 348 -11 2 1414 943 232 5 63 chr1 108688524 108688745 -88506687 + B3 SINE B2 3 210 -6 2 1414 22 0 0 0 chr1 108688919 108688941 -88506491 + AT_rich Low_complexity Low_complexity 1 22 0 2 1414 705 241 148 49 chr1 108689055 108689487 -88505945 + L1MD2 LINE L1 4821 5295 -851 2 1414 385 263 117 17 chr1 108689506 108689626 -88505806 + RSINE1 SINE B4 3 134 -31 2 1414 269 273 190 30 chr1 108689694 108689894 -88505538 + L1MD2 LINE L1 5422 5653 -589 2 1414 279 0 0 0 chr1 108689966 108689997 -88505435 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1414 463 234 196 0 chr1 108689999 108690157 -88505275 + L1MD2 LINE L1 6154 6342 -17 2 1414 336 143 41 41 chr1 108690158 108690231 -88505201 - PB1D9 SINE Alu -7 113 41 2 1414 1169 205 29 0 chr1 108690263 108690473 -88504959 + B3 SINE B2 1 216 0 2 1414 23 33 0 0 chr1 108690476 108690506 -88504926 + AT_rich Low_complexity Low_complexity 1 30 0 2 1414 616 267 30 0 chr1 108690687 108690822 -88504610 + RSINE1 SINE B4 21 159 -6 2 1414 186 167 0 0 chr1 108690823 108690859 -88504573 + (CGGA)n Simple_repeat Simple_repeat 2 37 0 2 1414 329 312 71 36 chr1 108691008 108691204 -88504228 + MIRb SINE MIR 17 219 -49 2 1414 203 55 0 53 chr1 108692645 108692683 -88502749 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1414 357 330 45 18 chr1 108693367 108693589 -88501843 + L1MD3 LINE L1 7730 7957 -38 2 1414 2374 232 91 55 chr1 108693687 108694725 -88500707 + Lx7 LINE L1 6439 7460 0 2 1414 192 387 86 14 chr1 108695042 108695181 -88500251 - L2b LINE L2 -302 3073 2925 2 1414 982 198 42 33 chr1 108696325 108696539 -88498893 - B3 SINE B2 0 216 1 2 1414 717 253 43 38 chr1 108696636 108696821 -88498611 - B3A SINE B2 -11 187 2 2 1414 377 179 167 0 chr1 108696867 108696951 -88498481 + RLTR20A2 LTR ERVK 1 98 -436 2 1414 12244 80 49 4 chr1 108696951 108699069 -88496363 - L1_Mus2 LINE L1 -1 6565 4304 2 1414 3213 45 0 0 chr1 108699069 108699426 -88496006 + IAPEY2_LTR LTR ERVK 1 357 0 2 1414 756 168 44 19 chr1 108699426 108699584 -88495848 + IAPEY3-int LTR ERVK 1 162 -7518 2 1414 9371 128 11 37 chr1 108699584 108701081 -88494351 + IAPEY3-int LTR ERVK 524 1982 -5698 2 1414 3606 69 9 0 chr1 108701058 108701506 -88493926 + IAPEY3-int LTR ERVK 2238 2689 -4991 2 1414 476 68 0 0 chr1 108701499 108701558 -88493874 + IAPEY3-int LTR ERVK 4852 4910 -2770 2 1414 3437 124 14 27 chr1 108701558 108702289 -88493143 + IAPEY3-int LTR ERVK 6907 7581 0 2 1414 2977 47 38 0 chr1 108702289 108702630 -88492802 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1414 22608 75 7 3 chr1 108702636 108706354 -88489078 - L1Md_F LINE L1 -1575 4308 575 2 1414 667 188 123 82 chr1 108706355 108706575 -88488857 + RLTR20A2 LTR ERVK 84 312 -222 2 1414 689 224 0 40 chr1 108706574 108706723 -88488709 + RLTR20A2 LTR ERVK 424 566 -12 2 1414 1208 44 0 0 chr1 108706762 108706920 -88488512 - L1Md_F LINE L1 -5583 936 779 2 1414 389 20 0 20 chr1 108706921 108706972 -88488460 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1414 1363 233 74 36 chr1 108707267 108707632 -88487800 + MTE2a LTR MaLR 1 379 0 2 1414 447 68 0 0 chr1 108708175 108708234 -88487198 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 2 1414 584 310 64 0 chr1 108708285 108708456 -88486976 - B3A SINE B2 -15 183 2 2 1414 834 230 35 55 chr1 108708737 108708939 -88486493 + B3A SINE B2 1 198 0 2 1414 21 0 0 0 chr1 108709132 108709153 -88486279 + AT_rich Low_complexity Low_complexity 1 21 0 2 1414 276 231 98 115 chr1 108709173 108709295 -88486137 - RSINE1 SINE B4 0 165 46 2 1414 26 0 0 0 chr1 108709859 108709885 -88485547 + AT_rich Low_complexity Low_complexity 1 26 0 2 1414 722 286 186 0 chr1 108710263 108710494 -88484938 + B4A SINE B4 1 274 -18 2 1414 1095 87 0 0 chr1 108710527 108710748 -88484684 + (CA)n Simple_repeat Simple_repeat 1 221 0 2 1414 3663 13 8 0 chr1 108712279 108712672 -88482760 - MTA_Mm LTR MaLR 0 396 1 2 1414 977 176 116 0 chr1 108712774 108712973 -88482459 + URR1A DNA MER1_type 5 226 0 2 1414 883 214 47 28 chr1 108713988 108714200 -88481232 - B3 SINE B2 0 216 1 2 1414 339 25 0 0 chr1 108714209 108714249 -88481183 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 2 1414 22 56 0 0 chr1 108714856 108714892 -88480540 + AT_rich Low_complexity Low_complexity 1 36 0 2 1414 1466 79 11 5 chr1 108715194 108715384 -88480048 - B2_Mm1t SINE B2 -2 191 1 3 1414 265 298 31 109 chr1 108715408 108715425 -88480007 + MT2B LTR ERVL 146 152 -449 3 1414 717 260 0 7 chr1 108715425 108715572 -88479860 + B1_Mus2 SINE Alu 2 147 0 3 1414 28 0 0 0 chr1 108715756 108715784 -88479648 + AT_rich Low_complexity Low_complexity 1 28 0 3 1414 1270 55 0 0 chr1 108715784 108715929 -88479503 - B1_Mm SINE Alu 0 147 3 3 1414 320 260 13 0 chr1 108715964 108716041 -88479391 + ID4 SINE ID 4 81 -2 3 1414 348 244 44 0 chr1 108716175 108716265 -88479167 - MER33 DNA MER1_type -230 94 1 3 1414 237 324 0 0 chr1 108716510 108716584 -88478848 - ID4 SINE ID -2 81 8 3 1414 334 250 83 0 chr1 108717197 108717269 -88478163 - B3A SINE B2 -118 80 3 3 1414 1016 99 13 0 chr1 108717509 108717661 -88477771 + URR1A DNA MER1_type 73 226 0 3 1414 22 0 0 0 chr1 108718045 108718067 -88477365 + AT_rich Low_complexity Low_complexity 1 22 0 3 1414 754 255 5 48 chr1 108719484 108719690 -88475742 - B3A SINE B2 0 198 2 3 1414 1908 103 111 17 chr1 108719763 108720060 -88475372 + ORR1A4 LTR MaLR 5 329 0 3 1414 1282 103 51 0 chr1 108720114 108720289 -88475143 + B2_Mm2 SINE B2 4 187 -8 3 1414 3441 36 0 3 chr1 108720628 108721020 -88474412 - L1Md_F2 LINE L1 0 6582 6192 3 1414 328 253 30 40 chr1 108721214 108721313 -88474119 - L1MC3 LINE L1 -1080 6705 6608 3 1414 841 234 32 11 chr1 108722337 108722527 -88472905 + B3A SINE B2 3 196 -2 3 1414 1075 311 80 43 chr1 108722530 108722605 -88472827 + L1M3 LINE L1 4647 4712 -1428 3 1414 3251 142 60 12 chr1 108722605 108723120 -88472312 - Lx LINE L1 -1 6653 6114 3 1414 3587 158 68 13 chr1 108723120 108723808 -88471624 + L1_Mur2 LINE L1 4684 5409 -468 3 1414 188 34 0 33 chr1 108723882 108723912 -88471520 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 3 1414 228 236 36 0 chr1 108724575 108724630 -88470802 - BC1_Mm scRNA scRNA -91 61 5 3 1414 3281 141 99 16 chr1 108724745 108725381 -88470051 + Lx4B LINE L1 6350 7038 -20 3 1414 294 29 0 0 chr1 108725382 108725417 -88470015 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1414 267 309 79 29 chr1 108725989 108726129 -88469303 - MER5A DNA MER1_type -7 182 36 3 1414 258 281 81 59 chr1 108726013 108726149 -88469283 + MER5A DNA MER1_type 43 181 -8 3 1414 381 302 58 32 chr1 108726173 108726327 -88469105 - MER5B DNA MER1_type -6 172 15 3 1414 1327 272 101 32 chr1 108727663 108728473 -88466959 - L1MB4 LINE L1 -359 6000 5143 3 1414 347 309 21 28 chr1 108728486 108728629 -88466803 - L1MB4 LINE L1 -1051 5095 4954 3 1414 258 278 70 77 chr1 108728913 108729069 -88466363 - MLT1-int LTR MaLR -709 662 508 3 1414 593 115 10 0 chr1 108729071 108729167 -88466265 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 1414 735 333 22 4 chr1 108729167 108729444 -88465988 - MLT-int LTR MaLR -1214 521 240 3 1414 301 312 9 60 chr1 108729436 108729552 -88465880 - MLT-int LTR MaLR -1620 115 6 3 1414 653 307 108 69 chr1 108729570 108729959 -88465473 - MLT2B1 LTR ERVL -14 506 98 3 1414 1368 244 65 86 chr1 108730337 108731192 -88464240 + RMER12 LTR ERVK 1 804 -1044 3 1414 584 248 58 128 chr1 108731161 108731261 -88464171 + RMER12 LTR ERVK 915 1003 -319 3 1414 720 0 0 0 chr1 108731261 108731341 -88464091 + (TTCCC)n Simple_repeat Simple_repeat 1 80 0 3 1414 584 248 58 128 chr1 108731341 108731568 -88463864 + RMER12 LTR ERVK 1004 1219 -103 3 1414 281 153 264 0 chr1 108732081 108732153 -88463279 - B4A SINE B4 -200 92 2 3 1414 231 114 0 0 chr1 108732307 108732342 -88463090 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1414 21 0 0 0 chr1 108732702 108732723 -88462709 + AT_rich Low_complexity Low_complexity 1 21 0 3 1414 245 220 41 62 chr1 108732736 108732833 -88462599 - L1MC4 LINE L1 -28 8014 7920 3 1414 350 217 0 43 chr1 108733377 108733565 -88461867 + CT-rich Low_complexity Low_complexity 1 180 0 3 1414 359 307 59 0 chr1 108733588 108733689 -88461743 - PB1D10 SINE Alu -5 112 6 3 1414 1174 271 100 13 chr1 108733691 108734080 -88461352 - L1M5 LINE L1 -367 5812 5390 3 1414 275 361 95 0 chr1 108734134 108734303 -88461129 - MIR SINE MIR -34 228 44 3 1414 1193 196 18 4 chr1 108734521 108734797 -88460635 + Lx2 LINE L1 5959 6238 -759 3 1414 294 167 113 29 chr1 108735075 108735155 -88460277 - ID4_ SINE ID -59 93 10 3 1414 366 283 98 66 chr1 108735364 108735712 -88459720 - L1MC5 LINE L1 -424 7537 7179 3 1414 222 216 12 98 chr1 108736102 108736184 -88459248 - MIRb SINE MIR -99 169 95 3 1414 291 114 0 0 chr1 108737175 108737219 -88458213 + (TCC)n Simple_repeat Simple_repeat 3 46 0 3 1414 936 254 70 102 chr1 108737495 108738051 -88457381 + Lx8 LINE L1 6729 7266 -207 3 1414 283 279 0 0 chr1 108738051 108738119 -88457313 + RMER15 LTR ERVL 403 470 -105 3 1414 198 143 0 0 chr1 108738119 108738154 -88457278 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 3 1414 510 231 28 0 chr1 108738877 108738985 -88456447 - B1_Mus2 SINE Alu 0 147 37 3 1414 187 279 73 31 chr1 108739212 108739308 -88456124 + MIRb SINE MIR 106 205 -63 3 1414 189 0 0 0 chr1 108739592 108739613 -88455819 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1414 230 293 176 13 chr1 108739758 108739917 -88455515 - MIR SINE MIR -46 216 32 3 1414 595 274 151 49 chr1 108740263 108740528 -88454904 + B4A SINE B4 1 292 0 3 1414 2190 170 88 12 chr1 108741029 108741440 -88453992 + RMER10A LTR ERVL 1 442 0 3 1414 410 190 38 0 chr1 108741531 108741610 -88453822 + Lx5 LINE L1 6479 6560 -490 3 1414 292 270 27 0 chr1 108741610 108741684 -88453748 - RLTR28 LTR ERVL -448 76 1 3 1414 1293 281 16 16 chr1 108741713 108742079 -88453353 - Lx6 LINE L1 -26 7434 7069 3 1414 22 35 0 0 chr1 108742089 108742118 -88453314 + AT_rich Low_complexity Low_complexity 1 29 0 3 1414 1952 294 90 103 chr1 108742346 108743506 -88451926 + Lx5 LINE L1 5873 7017 -33 3 1414 1079 91 17 6 chr1 108743511 108743687 -88451745 + (GAA)n Simple_repeat Simple_repeat 1 178 0 3 1414 375 23 0 0 chr1 108743687 108743731 -88451701 + (GGA)n Simple_repeat Simple_repeat 2 45 0 3 1414 1037 266 7 50 chr1 108743901 108744178 -88451254 + RMER1C Other Other 28 292 -1050 3 1414 426 313 15 156 chr1 108744444 108744651 -88450781 - Lx8 LINE L1 -1101 6372 6182 3 1414 186 26 0 95 chr1 108744651 108744693 -88450739 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 3 1414 426 313 15 156 chr1 108744693 108744818 -88450614 - Lx8 LINE L1 -1292 6181 6087 3 1414 413 270 10 10 chr1 108744868 108744969 -88450463 - B1F SINE Alu -1 148 48 3 1414 859 195 110 50 chr1 108744983 108745183 -88450249 - B3 SINE B2 -3 213 2 3 1414 300 186 44 9 chr1 108745276 108745390 -88450042 + GA-rich Low_complexity Low_complexity 3 120 0 3 1414 26 0 0 0 chr1 108745416 108745442 -88449990 + AT_rich Low_complexity Low_complexity 1 26 0 3 1414 38852 29 0 0 chr1 108745442 108752075 -88443357 - L1Md_T LINE L1 0 6585 1 3 1414 31 26 0 0 chr1 108752943 108752981 -88442451 + AT_rich Low_complexity Low_complexity 1 38 0 3 1414 645 189 142 0 chr1 108752984 108753111 -88442321 + B1_Mur3 SINE Alu 5 149 0 3 1414 409 284 56 14 chr1 108753609 108753627 -88441805 + B1F2 SINE Alu 1 149 0 3 1414 501 252 16 16 chr1 108753627 108753752 -88441680 + ID_B1 SINE B4 100 224 0 3 1414 918 28 0 0 chr1 108753970 108754079 -88441353 + (GGGAGA)n Simple_repeat Simple_repeat 4 112 0 3 1414 21 0 0 0 chr1 108756116 108756137 -88439295 + AT_rich Low_complexity Low_complexity 1 21 0 3 1414 270 391 39 8 chr1 108756546 108756675 -88438757 - MIRb SINE MIR -119 149 17 3 1414 261 0 0 0 chr1 108756777 108756806 -88438626 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1414 300 53 0 0 chr1 108757093 108757131 -88438301 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1414 216 0 0 0 chr1 108757131 108757155 -88438277 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1414 203 152 22 0 chr1 108758440 108758486 -88436946 + (TAA)n Simple_repeat Simple_repeat 1 47 0 3 1414 209 98 24 0 chr1 108758526 108758567 -88436865 + (TTTAA)n Simple_repeat Simple_repeat 5 46 0 3 1414 389 231 0 148 chr1 108759211 108759333 -88436099 + PB1 SINE Alu 5 108 -19 3 1414 360 0 0 0 chr1 108759441 108759481 -88435951 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3 1414 431 261 62 97 chr1 108759576 108759720 -88435712 - B1F SINE Alu -9 140 2 3 1414 2865 40 0 0 chr1 108759729 108760053 -88435379 - L1Md_T LINE L1 -1 6581 6258 3 1414 303 268 28 0 chr1 108760153 108760224 -88435208 - BLACKJACK DNA AcHobo -2870 74 2 3 1414 824 246 103 131 chr1 108760368 108760494 -88434938 - Lx9 LINE L1 -24 7620 7517 3 1414 405 0 0 0 chr1 108760494 108760539 -88434893 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1414 387 0 0 0 chr1 108760539 108760581 -88434851 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1414 824 246 103 131 chr1 108760581 108761123 -88434309 - Lx9 LINE L1 -128 7516 6971 3 1414 513 0 0 0 chr1 108761278 108761335 -88434097 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 3 1414 1326 141 25 13 chr1 108761386 108761623 -88433809 + RLTR15 LTR ERVK 120 359 0 3 1414 1390 269 14 19 chr1 108761631 108761991 -88433441 + Lx9 LINE L1 6626 6983 -661 3 1414 1269 177 59 0 chr1 108762211 108762414 -88433018 - B3 SINE B2 0 216 2 3 1414 402 283 41 70 chr1 108762754 108762925 -88432507 + MIR3 SINE MIR 22 187 -21 3 1414 659 241 118 4 chr1 108763015 108763252 -88432180 - Lx9 LINE L1 -15 7629 7366 3 1414 387 0 0 0 chr1 108763816 108763859 -88431573 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 3 1414 684 113 51 17 chr1 108763859 108763967 -88431465 - B2_Mm2 SINE B2 -34 161 48 3 1414 774 299 4 26 chr1 108763971 108764201 -88431231 - MTEb LTR MaLR -10 369 145 3 1414 1410 89 10 21 chr1 108764868 108765062 -88430370 + B2_Mm1t SINE B2 1 192 -1 3 1414 968 241 75 36 chr1 108765077 108765173 -88430259 - RLTR20B2 LTR ERVK 0 577 483 4 1414 261 0 0 0 chr1 108765173 108765202 -88430230 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1414 1026 213 63 37 chr1 108765202 108765615 -88429817 - RLTR20B2 LTR ERVK -95 482 1 4 1414 604 286 33 35 chr1 108766176 108766427 -88429005 - MLT1C LTR MaLR -138 252 13 4 1414 23 33 0 0 chr1 108766433 108766463 -88428969 + AT_rich Low_complexity Low_complexity 1 30 0 4 1414 24 32 0 0 chr1 108766483 108766514 -88428918 + AT_rich Low_complexity Low_complexity 1 31 0 4 1414 640 303 54 22 chr1 108768127 108768350 -88427082 - Lx8 LINE L1 0 7473 7244 4 1414 933 252 138 47 chr1 108768352 108768693 -88426739 + Lx8 LINE L1 6825 7196 -277 4 1414 226 136 0 137 chr1 108768703 108768754 -88426678 - B4 SINE B4 -220 72 29 4 1414 321 26 0 0 chr1 108769087 108769125 -88426307 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1414 211 194 0 27 chr1 108769876 108769913 -88425519 - MER5B DNA MER1_type -110 68 33 4 1414 279 231 43 18 chr1 108770226 108770389 -88425043 + CT-rich Low_complexity Low_complexity 2 168 0 4 1414 415 286 75 0 chr1 108770632 108770779 -88424653 - MER5A1 DNA MER1_type -7 159 2 4 1414 525 32 0 0 chr1 108770848 108770911 -88424521 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1414 730 306 41 65 chr1 108770912 108771279 -88424153 - ORR1E LTR MaLR 0 359 2 4 1414 220 209 47 0 chr1 108771279 108771365 -88424067 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 1414 360 361 44 31 chr1 108773313 108773473 -88421959 + RSINE1 SINE B4 3 164 -1 4 1414 2273 270 5 19 chr1 108773845 108774461 -88420971 - Lx7 LINE L1 -396 7300 6694 4 1414 283 336 59 0 chr1 108774601 108774720 -88420712 + L2c LINE L2 3260 3385 -2 4 1414 762 302 16 0 chr1 108774756 108774938 -88420494 - ID_B1 SINE B4 -38 186 2 4 1414 405 0 0 0 chr1 108776109 108776154 -88419278 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1414 450 268 24 8 chr1 108776220 108776344 -88419088 - B1F SINE Alu -2 147 22 4 1414 22 56 0 0 chr1 108776413 108776449 -88418983 + AT_rich Low_complexity Low_complexity 1 36 0 4 1414 198 171 0 0 chr1 108776652 108776693 -88418739 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 4 1414 182 341 102 86 chr1 108777123 108777309 -88418123 - MIR SINE MIR -73 189 1 4 1414 517 335 83 6 chr1 108779036 108779348 -88416084 - MER46C DNA MER2_type -1 337 2 4 1414 963 115 0 0 chr1 108783086 108783234 -88412198 + (TTCC)n Simple_repeat Simple_repeat 2 149 0 4 1414 200 228 0 17 chr1 108783234 108783292 -88412140 + CT-rich Low_complexity Low_complexity 2 58 0 4 1414 450 0 0 0 chr1 108784484 108784534 -88410898 + (GGA)n Simple_repeat Simple_repeat 3 52 0 4 1414 1099 197 126 9 chr1 108786793 108787023 -88408409 - ORR1C1 LTR MaLR -38 340 84 4 1414 216 0 0 0 chr1 108787024 108787048 -88408384 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 4 1414 240 258 0 31 chr1 108787100 108787164 -88408268 + (CATA)n Simple_repeat Simple_repeat 1 62 0 4 1414 317 75 0 9 chr1 108787223 108787272 -88408160 + L1_Mm LINE L1 3781 3830 -2056 4 1414 293 266 15 15 chr1 108787382 108787447 -88407985 + ID4_ SINE ID 16 80 -3 4 1414 229 219 16 0 chr1 108787602 108787666 -88407766 + (CAAA)n Simple_repeat Simple_repeat 1 65 0 4 1414 307 242 271 29 chr1 108787670 108787947 -88407485 + BLACKJACK DNA AcHobo 1069 1412 -1532 4 1414 999 242 86 89 chr1 108787967 108788326 -88407106 + RMER1B Other Other 3 360 -706 4 1414 1224 250 41 169 chr1 108788326 108788889 -88406543 + RMER1B Other Other 176 666 -400 4 176 14383 155 36 12 chr1 108788901 108790744 -88404688 + L1_Mur2 LINE L1 1580 3470 -2407 4 1415 512 77 13 0 chr1 108790744 108790822 -88404610 + (CCAA)n Simple_repeat Simple_repeat 1 79 0 4 1415 14383 155 36 12 chr1 108790822 108791629 -88403803 + L1_Mur2 LINE L1 3471 4293 -1584 4 1415 6217 126 77 1 chr1 108791631 108792598 -88402834 + L1_Mus4 LINE L1 5597 6636 0 4 1415 898 125 0 0 chr1 108792603 108792739 -88402693 + L1_Mur2 LINE L1 4279 4414 -1463 4 1415 1567 205 95 29 chr1 108792736 108793157 -88402275 + Lx2B LINE L1 6551 6999 -1 4 1415 15719 162 109 9 chr1 108793244 108797375 -88398057 - Lx LINE L1 0 6654 2074 4 1415 1067 154 44 0 chr1 108797362 108797544 -88397888 - L1VL4 LINE L1 -5916 386 197 4 1415 244 358 40 45 chr1 108798459 108798658 -88396774 - L1MB1 LINE L1 0 6168 5971 4 1415 510 237 4 0 chr1 108798949 108799062 -88396370 - B1_Mur3 SINE Alu 0 120 5 4 1415 1535 290 106 47 chr1 108799074 108799822 -88395610 - Lx8 LINE L1 -29 7444 6653 4 1415 1312 237 58 13 chr1 108799945 108800338 -88395094 - L1MB1 LINE L1 -504 5664 5254 4 1415 240 111 0 0 chr1 108800693 108800729 -88394703 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1415 427 266 131 17 chr1 108800729 108800905 -88394527 - B4A SINE B4 -44 248 53 4 1415 822 56 0 0 chr1 108801094 108801202 -88394230 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 1415 355 341 22 15 chr1 108801259 108801396 -88394036 + L2b LINE L2 3238 3375 0 4 1415 223 325 0 12 chr1 108801887 108801971 -88393461 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 4 1415 1082 311 18 0 chr1 108801971 108802257 -88393175 - B4A SINE B4 0 292 2 4 1415 3099 72 0 0 chr1 108802874 108803262 -88392170 - L1_Mus1 LINE L1 -124 5759 5372 4 1415 961 76 0 30 chr1 108803259 108803380 -88392052 + L1_Mus1 LINE L1 5827 5947 -620 4 1415 4429 64 4 4 chr1 108803380 108803913 -88391519 + L1_Mus1 LINE L1 6035 6567 0 4 1415 961 76 0 30 chr1 108803913 108803926 -88391506 + L1_Mus1 LINE L1 5948 5957 -610 4 1415 28 0 0 0 chr1 108803930 108803958 -88391474 + AT_rich Low_complexity Low_complexity 1 28 0 4 1415 465 229 165 25 chr1 108803977 108804098 -88391334 + B3A SINE B2 53 190 -8 4 1415 198 118 0 0 chr1 108805274 108805308 -88390124 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1415 588 136 0 0 chr1 108805987 108806112 -88389320 + (TC)n Simple_repeat Simple_repeat 2 126 0 4 1415 279 196 17 35 chr1 108806124 108806182 -88389250 - ID_B1 SINE B4 -12 212 156 4 1415 213 293 116 95 chr1 108807248 108807395 -88388037 + MIRb SINE MIR 19 168 -100 4 1415 197 200 25 0 chr1 108808697 108808737 -88386695 + L2b LINE L2 3331 3371 -4 4 1415 233 314 35 0 chr1 108808878 108808964 -88386468 - MIR3 SINE MIR 0 208 120 4 1415 4320 51 2 6 chr1 108810420 108810930 -88384502 - L1Md_F2 LINE L1 -1 6581 6074 4 1415 876 231 76 32 chr1 108810964 108811215 -88384217 + Lx6 LINE L1 7173 7434 -26 4 1415 419 307 67 22 chr1 108811363 108811586 -88383846 + L1MC4 LINE L1 7436 7668 -374 4 1415 329 302 30 63 chr1 108811627 108811864 -88383568 + L1MC4 LINE L1 7783 8011 -31 4 1415 332 311 78 0 chr1 108812509 108812612 -88382820 - B1F SINE Alu -6 143 33 4 1415 1173 65 0 0 chr1 108813366 108813504 -88381928 + B1_Mus2 SINE Alu 1 138 -9 4 1415 300 53 0 0 chr1 108813514 108813552 -88381880 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 4 1415 201 333 13 13 chr1 108813922 108813998 -88381434 + L3 LINE CR1 2084 2159 -2330 4 1415 831 290 77 61 chr1 108814009 108814603 -88380829 - L1MB8 LINE L1 -13 6165 5562 4 1415 427 195 0 33 chr1 108815085 108815175 -88380257 - RLTR23 LTR ERV1 -336 94 8 4 1415 310 303 80 124 chr1 108815243 108815382 -88380050 - L1MB8 LINE L1 -668 5516 5386 4 1415 2170 51 4 0 chr1 108815382 108815635 -88379797 + L1Md_T LINE L1 6328 6581 -1 4 1415 425 293 96 37 chr1 108815635 108815892 -88379540 - L1MB8 LINE L1 -799 5385 5133 4 1415 482 335 20 7 chr1 108816003 108816153 -88379279 + RSINE1 SINE B4 12 163 -2 4 1415 28 29 0 0 chr1 108816158 108816193 -88379239 + AT_rich Low_complexity Low_complexity 1 35 0 4 1415 233 303 11 0 chr1 108816193 108816282 -88379150 - L1MB8 LINE L1 -1122 5024 4935 4 1415 335 286 122 7 chr1 108816281 108816429 -88379003 + L1MB8 LINE L1 4756 4920 -1226 4 1415 7348 104 10 32 chr1 108816446 108816980 -88378452 + Lx3A LINE L1 5955 6486 -495 4 1415 2165 136 0 7 chr1 108816980 108817290 -88378142 + RLTR10E LTR ERVK 1 308 -3 4 1415 7348 104 10 32 chr1 108817290 108817801 -88377631 + Lx3A LINE L1 6487 6976 -5 4 1415 2703 128 10 2 chr1 108817808 108818215 -88377217 + L1_Mm LINE L1 5460 5869 -14 4 1415 3097 36 2 140 chr1 108818219 108818669 -88376763 - RLTR10 LTR ERVK -2 388 1 4 1415 17263 25 1 0 chr1 108818671 108820624 -88374808 - RLTR10-int LTR ERVK -3 1984 1 4 1415 3038 36 2 140 chr1 108820626 108821076 -88374356 - RLTR10 LTR ERVK -2 388 1 4 1415 5710 115 9 3 chr1 108821076 108821852 -88373580 + Lx LINE L1 5866 6646 -8 4 1415 1195 70 7 0 chr1 108821876 108822019 -88373413 + B1_Mus2 SINE Alu 4 147 0 4 1415 197 197 0 15 chr1 108822019 108822086 -88373346 + A-rich Low_complexity Low_complexity 5 70 0 4 1415 201 108 0 0 chr1 108822153 108822190 -88373242 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1415 11899 161 26 29 chr1 108822198 108824849 -88370583 + Lx4B LINE L1 3717 6382 -676 4 1415 2397 100 47 18 chr1 108824849 108825236 -88370196 - RLTR13D1 LTR ERVK 0 806 409 4 1415 4049 156 43 37 chr1 108825236 108825995 -88369437 - L1_Mus2 LINE L1 -4 6562 5799 4 1415 21 57 0 0 chr1 108825997 108826032 -88369400 + AT_rich Low_complexity Low_complexity 1 35 0 4 1415 218 258 0 46 chr1 108826057 108826122 -88369310 + L3 LINE CR1 2198 2259 -2230 4 1415 396 59 0 0 chr1 108826739 108826790 -88368642 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1415 302 250 56 0 chr1 108826793 108826865 -88368567 - RSINE1 SINE B4 -25 140 65 4 1415 3221 52 36 8 chr1 108826962 108827347 -88368085 - MTA_Mm LTR MaLR 0 396 1 4 1415 1189 171 93 4 chr1 108828093 108828339 -88367093 + Lx9 LINE L1 7198 7465 -179 4 1415 360 0 0 0 chr1 108828341 108828381 -88367051 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1415 466 124 11 11 chr1 108828382 108828472 -88366960 + Lx9 LINE L1 7521 7610 -34 4 1415 23 0 0 0 chr1 108828593 108828616 -88366816 + AT_rich Low_complexity Low_complexity 1 23 0 4 1415 897 186 14 0 chr1 108831402 108831547 -88363885 - B1_Mur4 SINE Alu -3 147 1 4 1415 186 398 0 12 chr1 108831637 108831721 -88363711 + L2c LINE L2 3305 3387 0 4 1415 231 103 0 0 chr1 108831836 108831875 -88363557 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1415 492 275 130 0 chr1 108831894 108832032 -88363400 - B3A SINE B2 -41 157 2 4 1415 266 267 70 0 chr1 108832167 108832253 -88363179 - MER58B DNA MER1_type 0 341 250 4 1415 321 26 0 0 chr1 108832680 108832718 -88362714 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1415 467 232 0 44 chr1 108832733 108832823 -88362609 - PB1D9 SINE Alu -33 87 2 4 1415 300 282 8 127 chr1 108832823 108832848 -88362584 - B4 SINE B4 -119 170 70 4 1415 270 0 0 0 chr1 108832848 108832878 -88362554 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1415 1226 68 0 0 chr1 108832878 108833025 -88362407 - B1_Mus2 SINE Alu 0 147 1 5 1415 284 181 72 92 chr1 108834462 108834614 -88360818 - RMER17A2 LTR ERVK -517 389 241 5 1415 509 296 63 38 chr1 108836249 108836407 -88359025 - RSINE1 SINE B4 0 165 4 5 1415 213 314 157 0 chr1 108836983 108837053 -88358379 + ID4 SINE ID 2 82 -1 5 1415 339 25 0 0 chr1 108837192 108837232 -88358200 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 5 1415 181 163 41 0 chr1 108837271 108837320 -88358112 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1415 363 23 0 0 chr1 108837516 108837560 -88357872 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1415 559 283 14 14 chr1 108837567 108837714 -88357718 - RSINE1 SINE B4 -17 148 2 5 1415 311 315 98 27 chr1 108837815 108837998 -88357434 + L1M5 LINE L1 5603 5798 -326 5 1415 236 244 8 47 chr1 108838093 108838222 -88357210 + (CATA)n Simple_repeat Simple_repeat 4 127 0 5 1415 290 380 36 0 chr1 108839633 108839770 -88355662 + MER63A DNA AcHobo 5 146 -64 5 1415 231 236 0 0 chr1 108840043 108840115 -88355317 + (CCAA)n Simple_repeat Simple_repeat 2 73 0 5 1415 887 297 65 66 chr1 108842030 108842431 -88353001 + MLT1C LTR MaLR 44 420 -47 5 1415 790 175 5 14 chr1 108842539 108842762 -88352670 + CT-rich Low_complexity Low_complexity 1 220 0 5 1415 1113 75 106 6 chr1 108842821 108842981 -88352451 + B2_Mm2 SINE B2 1 176 -19 5 1415 321 339 184 2 chr1 108843668 108844070 -88351362 + L2 LINE L2 2608 3082 -337 5 1415 1257 227 99 9 chr1 108844073 108844415 -88351017 - ORR1D1 LTR MaLR -1 373 1 5 1415 567 261 109 4 chr1 108845072 108845311 -88350121 - MER33 DNA MER1_type 0 324 61 5 1415 242 193 158 0 chr1 108845514 108845571 -88349861 - ID SINE ID -156 68 3 5 1415 24 53 0 0 chr1 108846985 108847023 -88348409 + AT_rich Low_complexity Low_complexity 1 38 0 5 1415 538 253 31 19 chr1 108847663 108847824 -88347608 - RSINE1 SINE B4 0 165 3 5 1415 2151 145 123 19 chr1 108848258 108848728 -88346704 - Lx4B LINE L1 -715 6343 5825 5 1415 339 44 0 0 chr1 108849327 108849372 -88346060 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1415 2868 76 10 46 chr1 108849542 108849957 -88345475 + MTB LTR MaLR 1 400 0 5 1415 387 284 0 73 chr1 108850668 108850778 -88344654 + PB1D10 SINE Alu 7 108 -9 5 1415 202 304 0 0 chr1 108850780 108850849 -88344583 + (CAGAA)n Simple_repeat Simple_repeat 2 70 0 5 1415 236 130 22 0 chr1 108852477 108852523 -88342909 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 5 1415 192 379 105 0 chr1 108852591 108852715 -88342717 - MIRb SINE MIR -46 222 86 5 1415 612 291 21 26 chr1 108854750 108854919 -88340513 - B3 SINE B2 0 198 35 5 1415 216 338 99 62 chr1 108855671 108855832 -88339600 + B4A SINE B4 3 169 -123 5 1415 240 143 0 0 chr1 108855935 108855977 -88339455 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1415 324 254 220 0 chr1 108855977 108856095 -88339337 + HAL1-3A_ME LINE L1 1975 2118 -740 5 1415 244 203 15 30 chr1 108856102 108856168 -88339264 + (CAGAGA)n Simple_repeat Simple_repeat 6 70 0 5 1415 248 154 0 30 chr1 108856207 108856274 -88339158 + (CAGAGA)n Simple_repeat Simple_repeat 6 70 0 5 1415 471 307 0 0 chr1 108857246 108857360 -88338072 + PB1D7 SINE Alu 1 114 -6 5 1415 604 250 29 0 chr1 108857738 108857874 -88337558 + B3 SINE B2 70 209 -7 5 1415 226 195 0 0 chr1 108858590 108858631 -88336801 - MLT2C1 LTR ERVL 0 563 523 5 1415 26006 142 11 11 chr1 108858705 108864620 -88330812 + L1_Mus3 LINE L1 499 6419 -219 5 1415 370 262 56 46 chr1 108864667 108864775 -88330657 + ID_B1 SINE B4 1 109 -115 5 1415 459 0 0 0 chr1 108864775 108864826 -88330606 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1415 298 246 18 0 chr1 108864929 108865043 -88330389 + CT-rich Low_complexity Low_complexity 4 119 0 5 1415 238 284 90 27 chr1 108865104 108865292 -88330140 - L1MC4 LINE L1 -4835 1380 1181 5 1415 28 29 0 0 chr1 108865692 108865727 -88329705 + AT_rich Low_complexity Low_complexity 1 35 0 5 1415 226 47 45 23 chr1 108865816 108865860 -88329572 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 1415 210 167 0 0 chr1 108866046 108866082 -88329350 + T-rich Low_complexity Low_complexity 1 36 0 5 1415 3535 34 13 9 chr1 108866103 108866589 -88328843 - L1Md_F2 LINE L1 0 6582 6107 5 1415 270 0 0 0 chr1 108867350 108867380 -88328052 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1415 315 0 0 0 chr1 108867413 108867448 -88327984 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1415 414 0 0 0 chr1 108867448 108867493 -88327939 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1415 1228 218 83 60 chr1 108867496 108867798 -88327634 - ORR1C1 LTR MaLR -69 309 1 5 1415 311 328 168 12 chr1 108868208 108868625 -88326807 - L1M5 LINE L1 -1144 5002 4521 5 1415 204 97 0 0 chr1 108868983 108869014 -88326418 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 5 1415 22362 101 12 11 chr1 108869495 108873941 -88321491 + L1Md_F2 LINE L1 7 4469 -1414 5 1415 3867 86 4 36 chr1 108873941 108874499 -88320933 + L1Md_F2 LINE L1 6033 6572 -10 5 1415 230 271 27 54 chr1 108876505 108876579 -88318853 + L2a LINE L2 3351 3422 -4 5 1415 243 314 76 32 chr1 108876875 108877033 -88318399 - MER5B DNA MER1_type -1 177 13 5 1415 441 0 0 0 chr1 108877339 108877388 -88318044 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1415 233 263 56 75 chr1 108879588 108879695 -88315737 - MLT1A1 LTR MaLR 0 408 304 5 1415 267 315 60 51 chr1 108880062 108880179 -88315253 + MIRb SINE MIR 14 131 -137 5 1415 495 0 0 0 chr1 108881261 108881316 -88314116 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1415 373 277 0 0 chr1 108881442 108881525 -88313907 + MER33 DNA MER1_type 44 126 -198 5 1415 1135 58 0 0 chr1 108881549 108881688 -88313744 + B1_Mm SINE Alu 1 139 -8 5 1415 261 0 0 0 chr1 108881688 108881717 -88313715 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1415 22 35 0 0 chr1 108881788 108881817 -88313615 + AT_rich Low_complexity Low_complexity 1 29 0 5 1415 344 279 48 12 chr1 108881892 108882059 -88313373 - L1MB7 LINE L1 -10 6174 6002 5 1415 667 292 49 42 chr1 108882330 108882637 -88312795 - L1MA6 LINE L1 -238 6062 5754 5 1415 1223 273 118 22 chr1 108883193 108883703 -88311729 - Lx8 LINE L1 -24 7449 6891 5 1415 595 279 45 54 chr1 108883772 108884106 -88311326 - RLTR15 LTR ERVK -15 344 14 5 1415 8513 127 24 6 chr1 108884531 108886283 -88309149 - Lx2 LINE L1 -2 6995 5204 5 1415 288 313 66 82 chr1 108886282 108886585 -88308847 - L1M4c LINE L1 -4727 1657 1360 5 1415 351 0 0 0 chr1 108887086 108887125 -88308307 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1415 555 43 0 0 chr1 108887386 108887456 -88307976 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1415 376 329 40 102 chr1 108887584 108887909 -88307523 - L1M4c LINE L1 -5280 1104 800 5 1415 1298 215 21 21 chr1 108888115 108888400 -88307032 - Lx6 LINE L1 -435 7025 6741 5 1415 903 117 142 28 chr1 108888437 108888613 -88306819 - RMER1A Other Other 0 1030 835 5 1415 655 154 0 19 chr1 108888613 108888719 -88306713 + RLTR20B2 LTR ERVK 1 104 -456 5 1415 679 76 0 0 chr1 108888799 108888891 -88306541 - MusHAL1 LINE L1 -661 2051 1960 5 1415 5169 200 21 20 chr1 108888902 108890774 -88304658 - Lx6 LINE L1 -726 6734 4856 5 1415 258 305 62 21 chr1 108891121 108891218 -88304214 - L1M4c LINE L1 -5538 834 734 5 1415 212 125 42 0 chr1 108891839 108891887 -88303545 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 5 1415 5063 70 3 3 chr1 108893516 108894170 -88301262 + L1Md_F2 LINE L1 5915 6568 -14 5 1415 207 213 79 32 chr1 108894263 108894326 -88301106 + L2 LINE L2 1467 1532 -1887 5 1415 470 332 87 32 chr1 108894451 108894669 -88300763 + B4A SINE B4 57 286 -6 5 1415 258 32 0 0 chr1 108894708 108894739 -88300693 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 5 1415 454 276 118 49 chr1 108894788 108895046 -88300386 - MIR SINE MIR -3 259 7 5 1415 516 32 0 0 chr1 108896340 108896402 -88299030 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1415 284 64 0 21 chr1 108897629 108897677 -88297755 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1415 1191 190 157 0 chr1 108898148 108898480 -88296952 - Lx9 LINE L1 -2 7642 7259 5 1415 571 306 124 12 chr1 108898654 108899074 -88296358 - L1MB7 LINE L1 -131 6053 5587 5 1415 325 213 112 35 chr1 108899125 108899245 -88296187 + B1_Mur3 SINE Alu 3 128 -19 5 1415 28 0 0 0 chr1 108899281 108899309 -88296123 + AT_rich Low_complexity Low_complexity 1 28 0 5 1415 221 171 0 24 chr1 108899351 108899393 -88296039 + CT-rich Low_complexity Low_complexity 4 44 0 5 1415 561 105 0 0 chr1 108899398 108899484 -88295948 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 5 1415 239 233 291 0 chr1 108899493 108899579 -88295853 - PB1D9 SINE Alu -8 112 2 5 1415 263 282 48 55 chr1 108899626 108899791 -88295641 - L1MB7 LINE L1 -1024 5122 4959 5 1415 2962 65 3 0 chr1 108900375 108900761 -88294671 - L1Md_T LINE L1 -3 6579 6193 5 1415 6033 24 1 0 chr1 108900771 108901472 -88293960 - L1Md_F3 LINE L1 0 6584 5883 5 1415 707 75 0 0 chr1 108901472 108901565 -88293867 - 4.5SRNA scRNA scRNA -1 93 1 5 1415 477 114 3 30 chr1 108902611 108902711 -88292721 + L1_Mus1 LINE L1 6479 6580 -2 5 1415 820 293 161 13 chr1 108903922 108904233 -88291199 + ORR1E LTR MaLR 3 359 0 5 1415 635 290 22 76 chr1 108904581 108904872 -88290560 + MLT1E3 LTR MaLR 1 325 -355 5 1415 410 161 26 59 chr1 108904887 108905011 -88290421 + L1M2 LINE L1 5687 5807 -493 5 1415 23631 164 22 3 chr1 108905060 108908611 -88286821 - Lx LINE L1 -6 6648 3018 5 1415 333 0 0 0 chr1 108908611 108908648 -88286784 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1415 23631 153 25 5 chr1 108908648 108910806 -88284626 - Lx LINE L1 -2866 3017 823 5 1415 427 323 97 34 chr1 108911109 108911378 -88284054 - LTR52 LTR ERVL -122 299 14 5 1415 720 232 33 6 chr1 108911379 108911561 -88283871 - Lx6 LINE L1 -592 6868 6682 6 1415 1609 86 108 36 chr1 108911561 108911839 -88283593 - RMER17C-int LTR ERVK -577 2661 2364 6 1415 4305 198 68 28 chr1 108911839 108911916 -88283516 + L1Md_F LINE L1 163 230 -6386 6 1415 198 0 0 0 chr1 108911916 108911938 -88283494 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1415 4305 159 40 57 chr1 108911938 108913479 -88281953 + L1Md_F LINE L1 231 1760 -4123 6 1415 28 48 0 0 chr1 108916255 108916297 -88279135 + AT_rich Low_complexity Low_complexity 1 42 0 6 1416 32 43 0 0 chr1 108922040 108922086 -88273346 + AT_rich Low_complexity Low_complexity 1 46 0 6 1416 510 17 0 0 chr1 108923084 108923143 -88272289 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 6 1416 27112 154 24 16 chr1 108923443 108930315 -88265117 + Lx3B LINE L1 28 6959 -14 6 1416 5748 123 15 6 chr1 108930319 108930627 -88264805 + L1_Mm LINE L1 4928 5234 -649 6 1416 189 0 0 0 chr1 108930627 108930648 -88264784 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1416 5748 123 15 6 chr1 108930648 108931220 -88264212 + L1_Mm LINE L1 5235 5814 -69 6 1416 4287 82 0 19 chr1 108931220 108931816 -88263616 + L1Md_F2 LINE L1 5998 6582 0 6 1416 22574 97 2 107 chr1 108931897 108937965 -88257467 + L1Md_T LINE L1 679 5586 -297 6 1416 8253 39 2 0 chr1 108937965 108939006 -88256426 + L1Md_T LINE L1 5587 6582 0 6 1416 253 119 16 33 chr1 108939178 108939239 -88256193 + GA-rich Low_complexity Low_complexity 2 61 0 6 1416 732 193 0 0 chr1 108939250 108939385 -88256047 - L1_Mur3 LINE L1 -395 5485 5351 6 1416 277 160 29 78 chr1 108939421 108939523 -88255909 - Lx LINE L1 -3 6651 6555 6 1416 4155 167 53 3 chr1 108939527 108940398 -88255034 + Lx2B LINE L1 4937 5845 -722 6 1416 752 33 0 0 chr1 108940359 108940451 -88254981 - L1_Mus1 LINE L1 -616 5951 5860 6 1416 5765 80 30 0 chr1 108940442 108941201 -88254231 - L1Md_F2 LINE L1 -122 6460 5679 6 1416 945 175 6 6 chr1 108941201 108941379 -88254053 + Lx2B LINE L1 6820 6997 0 6 1416 235 368 0 0 chr1 108941919 108941995 -88253437 + ID4 SINE ID 2 77 -6 6 1416 321 89 0 0 chr1 108946393 108946438 -88248994 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1416 553 80 0 22 chr1 108946438 108946528 -88248904 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1416 1673 58 22 0 chr1 108946849 108947074 -88248358 - L1Md_F2 LINE L1 0 6582 6353 6 1416 4044 158 50 0 chr1 108949406 108950149 -88245283 + Lx2 LINE L1 2253 3032 -2854 6 1416 13342 141 26 4 chr1 108950147 108953546 -88241886 + Lx2 LINE L1 3523 6995 -2 6 1416 453 19 0 0 chr1 108953634 108953688 -88241744 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1416 567 294 113 18 chr1 108953713 108954039 -88241393 + L1M2 LINE L1 5415 5771 -520 6 1416 1447 197 82 0 chr1 108954093 108954372 -88241060 - RMER1B Other Other -323 743 442 6 1416 1163 207 220 0 chr1 108954417 108954712 -88240720 - RMER1B Other Other -703 363 4 6 1416 8033 47 5 2 chr1 108954933 108956147 -88239285 - L1Md_F2 LINE L1 -1 6581 5367 6 1416 1588 62 5 0 chr1 108956720 108956931 -88238501 + L1Md_F2 LINE L1 6365 6576 -6 6 1416 879 214 11 0 chr1 108957608 108957790 -88237642 - L1_Mur3 LINE L1 -140 5740 5557 6 1416 713 297 57 0 chr1 108957777 108957986 -88237446 + Lx6 LINE L1 7213 7433 -27 6 1416 2596 155 17 61 chr1 108958218 108958687 -88236745 - RLTR28 LTR ERVL -13 511 62 6 1416 3761 56 19 0 chr1 108958687 108959153 -88236279 - MT2C_Mm LTR ERVL 0 475 1 6 1416 2596 155 17 61 chr1 108959153 108959206 -88236226 - RLTR28 LTR ERVL -463 61 12 6 1416 4269 211 68 58 chr1 108959270 108960523 -88234909 - RMER3D-int LTR ERVK -5 2837 1564 6 1416 3244 41 8 0 chr1 108960523 108960916 -88234516 - MTA_Mm LTR MaLR 0 396 1 6 1416 7143 70 98 3 chr1 108960916 108961917 -88233515 - MTA_Mm-int LTR MaLR 0 1098 3 6 1416 3309 23 13 0 chr1 108961919 108962310 -88233122 - MTA_Mm LTR MaLR 0 396 1 6 1416 4269 226 124 55 chr1 108962310 108962729 -88232703 - RMER3D-int LTR ERVK -1279 1563 1382 6 1416 1642 181 5 46 chr1 108962729 108963117 -88232315 - RMER3D-int LTR ERVK -1456 1386 1015 6 1416 313 253 36 0 chr1 108963212 108963295 -88232137 - RMER3D-int LTR ERVK -2151 691 606 6 1416 432 262 66 113 chr1 108963305 108963606 -88231826 - RMER3D-int LTR ERVK -2546 296 10 6 1416 1602 144 29 22 chr1 108963917 108964229 -88231203 - BGLII_B LTR ERVK -6 435 122 6 1416 553 98 204 10 chr1 108964314 108964417 -88231015 - BGLII_B LTR ERVK -318 123 1 6 1416 240 347 2 13 chr1 108964704 108964791 -88230641 - MTEb LTR MaLR -13 366 280 6 1416 396 0 0 0 chr1 108965011 108965055 -88230377 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1416 37 52 0 0 chr1 108967772 108967830 -88227602 + AT_rich Low_complexity Low_complexity 1 58 0 6 1416 236 270 48 0 chr1 108967894 108967957 -88227475 + ID4 SINE ID 2 67 -16 6 1416 3902 181 21 52 chr1 108968017 108968889 -88226543 + L1Md_F2 LINE L1 422 1266 -5458 6 1416 1208 82 0 11 chr1 108968889 108969073 -88226359 + L1Md_F3 LINE L1 6403 6584 0 6 1416 33698 76 2 5 chr1 108969096 108973980 -88221452 + L1Md_F2 LINE L1 1236 6111 -471 6 1416 1329 77 10 10 chr1 108973980 108974178 -88221254 + L1Md_F2 LINE L1 6382 6579 -3 6 1416 25 0 0 0 chr1 108975287 108975312 -88220120 + AT_rich Low_complexity Low_complexity 1 25 0 6 1416 561 30 0 0 chr1 108978041 108978108 -88217324 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 1416 357 24 0 0 chr1 108978624 108978666 -88216766 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1416 23 33 0 0 chr1 108980195 108980225 -88215207 + AT_rich Low_complexity Low_complexity 1 30 0 6 1416 486 348 0 4 chr1 108981618 108981886 -88213546 - L1M2 LINE L1 -3075 3068 2802 6 1416 245 146 0 24 chr1 108981910 108981952 -88213480 + L1VL4 LINE L1 197 237 -6065 6 1416 2758 121 5 0 chr1 108981963 108982491 -88212941 + L1VL4 LINE L1 556 1085 -2474 6 1416 3263 63 25 9 chr1 108982490 108982925 -88212507 - L1_Mm LINE L1 -881 5002 4561 6 1416 191 61 30 0 chr1 108983006 108983039 -88212393 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1416 241 157 0 0 chr1 108983041 108983092 -88212340 - L1Md_T LINE L1 -3 6579 6529 6 1416 4247 123 2 3 chr1 108983092 108983737 -88211695 + L1_Mus1 LINE L1 5923 6566 -1 6 1416 240 203 0 0 chr1 108983759 108983818 -88211614 + Lx4A LINE L1 6999 7057 -1 6 1416 778 251 82 5 chr1 108983855 108984051 -88211381 - MTC LTR MaLR -10 411 201 6 1416 1914 221 54 59 chr1 108984028 108984623 -88210809 - MTC-int LTR MaLR -436 822 142 6 1416 8237 97 7 3 chr1 108984633 108985967 -88209465 - L1_Mus1 LINE L1 -4 6563 5226 6 1416 3437 20 5 0 chr1 108985967 108986361 -88209071 + MTA_Mm LTR MaLR 1 396 0 6 1416 8237 145 8 12 chr1 108986361 108987088 -88208344 - L1_Mus1 LINE L1 -658 5225 4504 6 1416 15257 169 31 30 chr1 108987086 108990610 -88204822 - L1_Mus1 LINE L1 -2140 3743 218 6 1416 450 36 0 0 chr1 108990704 108990760 -88204672 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1416 833 229 0 0 chr1 108990936 108991089 -88204343 + B3 SINE B2 1 153 -63 6 1416 317 268 46 0 chr1 108991159 108991312 -88204120 + L1MA4 LINE L1 5149 5308 -835 6 1416 380 266 123 48 chr1 108991315 108991461 -88203971 + MTC-int LTR MaLR 71 227 -1031 6 1416 725 283 115 38 chr1 108991512 108991857 -88203575 + L1MA4 LINE L1 5409 5787 -513 6 1416 411 21 0 0 chr1 108991857 108991905 -88203527 + (CATA)n Simple_repeat Simple_repeat 4 51 0 6 1416 725 283 115 38 chr1 108991905 108992003 -88203429 + L1MA4 LINE L1 5788 5886 -414 6 1416 477 0 0 0 chr1 108992019 108992072 -88203360 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1416 22 0 0 0 chr1 108992121 108992143 -88203289 + AT_rich Low_complexity Low_complexity 1 22 0 6 1416 24 0 0 0 chr1 108992962 108992986 -88202446 + AT_rich Low_complexity Low_complexity 1 24 0 6 1416 472 321 154 13 chr1 108993528 108993755 -88201677 + RMER15 LTR ERVL 299 557 -18 6 1416 274 306 149 0 chr1 108994087 108994309 -88201123 + L1MA6 LINE L1 2622 2876 -3264 6 1416 412 261 61 0 chr1 108994299 108994479 -88200953 + L1MA6 LINE L1 4732 4922 -1221 6 1416 292 318 3 81 chr1 108994522 108994790 -88200642 + G-rich Low_complexity Low_complexity 1 246 0 6 1416 409 287 84 30 chr1 108994884 108995146 -88200286 + L1MA6 LINE L1 4977 5252 -891 6 1416 1400 265 56 37 chr1 108995345 108995967 -88199465 + L1MA6 LINE L1 5518 6151 -149 6 1416 3487 181 53 11 chr1 108995992 108996656 -88198776 - RLTR17 LTR ERVK 0 692 1 6 1416 305 299 108 42 chr1 108996850 108997091 -88198341 + L1M3 LINE L1 5444 5700 -483 6 1416 7639 68 7 1 chr1 108997223 108998657 -88196775 - L1Md_F2 LINE L1 -12 6570 5126 6 1416 8067 72 30 38 chr1 108998663 108999316 -88196116 - L1Md_F2 LINE L1 -1494 4389 3727 6 1416 1027 116 0 0 chr1 108999316 108999463 -88195969 - B1_Mus2 SINE Alu 0 147 1 6 1416 8067 72 30 38 chr1 108999463 109000000 -88195432 - L1Md_F2 LINE L1 -2157 3726 3208 6 1416 12156 99 10 1 chr1 109000000 109002963 -88192469 - L1VL1 LINE L1 -2676 3207 217 1 1416 372 337 60 6 chr1 109003056 109003387 -88192045 - L1MB7 LINE L1 -131 6053 5705 2 1416 377 248 83 25 chr1 109003526 109003646 -88191786 + B1_Mur3 SINE Alu 3 129 -20 3 1416 21 36 0 0 chr1 109003682 109003710 -88191722 + AT_rich Low_complexity Low_complexity 1 28 0 4 1416 728 112 0 0 chr1 109003719 109003817 -88191615 - IAPEY_LTR LTR ERVK 0 385 288 5 1416 5097 91 34 4 chr1 109003819 109004551 -88190881 + RLTR13B1 LTR ERVK 140 893 0 6 1416 529 292 23 23 chr1 109004559 109004731 -88190701 + MTEb LTR MaLR 208 379 0 7 1416 603 286 105 62 chr1 109005078 109005354 -88190078 + MLT1E3 LTR MaLR 1 288 -336 8 1416 333 226 25 34 chr1 109005380 109005499 -88189933 + L1M1 LINE L1 5684 5801 -502 9 1416 7663 165 25 14 chr1 109005558 109007940 -88187492 - Lx LINE L1 -6 6648 4258 1 1416 749 162 32 2 chr1 109007952 109008132 -88187300 - Lx LINE L1 -2219 3667 3486 1 1416 31266 77 15 6 chr1 109008125 109010064 -88185368 - L1Md_F2 LINE L1 -11 6571 4631 1 1416 185 0 40 0 chr1 109010064 109010089 -88185343 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1416 31266 90 23 18 chr1 109010089 109014174 -88181258 - L1Md_F2 LINE L1 -1253 4630 511 1 1416 14973 76 2 20 chr1 109014175 109017206 -88178226 - L1Md_A LINE L1 -2603 3280 306 1 1416 1392 131 12 17 chr1 109017234 109017475 -88177957 - L1VL2 LINE L1 -5572 763 524 1 1416 37103 50 4 5 chr1 109017544 109023790 -88171642 - L1Md_T LINE L1 0 6582 342 1 1416 359 331 136 49 chr1 109024010 109024318 -88171114 - LTR52 LTR ERVL -73 348 14 1 1416 538 257 99 0 chr1 109024318 109024489 -88170943 - Lx6 LINE L1 -591 6869 6682 1 1416 1437 123 103 27 chr1 109024489 109024790 -88170642 - RMER17C-int LTR ERVK -577 2661 2338 1 1416 2931 111 4 2 chr1 109024811 109025281 -88170151 - L1_Mm LINE L1 -1822 4061 3591 1 1416 8236 182 85 69 chr1 109025282 109026868 -88168564 - RMER17C-int LTR ERVK -835 2403 871 1 1416 855 115 0 0 chr1 109026868 109026998 -88168434 + (GA)n Simple_repeat Simple_repeat 1 130 0 2 1416 8236 182 85 69 chr1 109026998 109027776 -88167656 - RMER17C-int LTR ERVK -2368 870 2 1 1416 605 209 90 65 chr1 109027800 109027964 -88167468 - RMER17C LTR ERVK 0 410 245 1 1416 252 0 0 0 chr1 109027964 109027992 -88167440 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2 1416 605 209 90 65 chr1 109027992 109028019 -88167413 - RMER17C LTR ERVK -166 244 214 1 1416 10499 140 38 7 chr1 109028019 109028507 -88166925 - RLTR22_Mur LTR ERVK -3 1845 1349 2 1416 378 57 0 0 chr1 109028507 109028560 -88166872 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1416 10499 140 38 7 chr1 109028560 109029861 -88165571 - RLTR22_Mur LTR ERVK -500 1348 3 2 1416 462 250 15 64 chr1 109029888 109030153 -88165279 - RMER17C LTR ERVK -158 252 1 1 1416 685 339 12 0 chr1 109030158 109030403 -88165029 - Lx5 LINE L1 -686 6364 6117 2 1416 1544 189 125 3 chr1 109030603 109030938 -88164494 + RLTR1 LTR ERV1 249 624 0 2 1416 920 228 17 21 chr1 109030949 109031182 -88164250 - Lx6 LINE L1 -1430 6030 5799 1 1416 3672 227 112 6 chr1 109031188 109032099 -88163333 - RMER1B Other Other -15 1051 44 2 1416 4217 43 0 8 chr1 109032631 109033143 -88162289 - L1Md_F2 LINE L1 -6 6576 6069 2 1416 1671 224 65 7 chr1 109033954 109034386 -88161046 - Lx6 LINE L1 -140 5740 5284 1 1416 646 185 96 0 chr1 109035188 109035366 -88160066 - Lx6 LINE L1 -582 5298 5104 1 1416 950 211 55 74 chr1 109035373 109035629 -88159803 + RMER10B LTR ERVL 148 398 0 2 1416 324 0 0 0 chr1 109036258 109036294 -88159138 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1416 9269 76 1 6 chr1 109037634 109039620 -88155812 - L1Md_F2 LINE L1 -3 6579 4604 3 1416 26805 135 14 6 chr1 109039613 109044925 -88150507 - L1_Mus1 LINE L1 -556 6011 725 3 1416 368 285 8 0 chr1 109044931 109045061 -88150371 - L1_Mus1 LINE L1 -5811 805 675 3 1416 689 243 17 151 chr1 109045146 109045504 -88149928 - L1VL1 LINE L1 -6069 353 44 3 1416 5398 168 55 4 chr1 109045540 109046702 -88148730 - Lx6 LINE L1 -1369 4508 3288 1 1416 8773 185 46 14 chr1 109046713 109048763 -88146669 + Lx2 LINE L1 3765 5876 -1121 3 1416 189 0 0 0 chr1 109048763 109048784 -88146648 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1416 5696 141 44 5 chr1 109048784 109049518 -88145914 + Lx2 LINE L1 5877 6643 -354 3 1416 1117 171 14 9 chr1 109049520 109049739 -88145693 + Lx2 LINE L1 6778 6997 0 3 1416 248 329 0 13 chr1 109050272 109050349 -88145083 + ID4 SINE ID 3 78 -5 3 1417 470 17 17 0 chr1 109054723 109054782 -88140650 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1417 22 56 0 0 chr1 109056759 109056795 -88138637 + AT_rich Low_complexity Low_complexity 1 36 0 3 1417 5213 83 3 7 chr1 109056795 109057507 -88137925 + L1Md_F2 LINE L1 5861 6569 -13 3 1417 7681 154 24 3 chr1 109058193 109059676 -88135756 + L1_Mur1 LINE L1 2253 3767 -2119 3 1417 29311 100 12 1 chr1 109059668 109064867 -88130565 + Lx2 LINE L1 343 5600 -283 4 1417 19761 116 8 5 chr1 109064867 109070424 -88125008 + L1_Mus1 LINE L1 2390 6504 -63 4 1417 7282 129 48 6 chr1 109070429 109071710 -88123722 + Lx2 LINE L1 5662 6995 -2 4 1417 33779 73 5 2 chr1 109071705 109077889 -88117543 - L1Md_F3 LINE L1 -7 6577 412 4 1417 351 44 0 0 chr1 109077975 109078020 -88117412 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1417 340 307 114 32 chr1 109078042 109078385 -88117047 + L1M2 LINE L1 5409 5779 -521 4 1417 543 98 0 0 chr1 109078417 109078509 -88116923 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 1417 266 50 25 0 chr1 109078509 109078549 -88116883 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1417 2152 224 167 7 chr1 109078564 109079181 -88116251 - RMER1B Other Other -307 759 44 4 1417 790 222 0 0 chr1 109080524 109080695 -88114737 - L1_Mur3 LINE L1 -140 5740 5570 4 1417 655 272 62 0 chr1 109080706 109080901 -88114531 + Lx6 LINE L1 7227 7433 -27 4 1417 2538 176 17 60 chr1 109081138 109081671 -88113761 - RLTR28 LTR ERVL -14 510 1 5 1417 3740 221 65 49 chr1 109081722 109083003 -88112429 - RMER3D-int LTR ERVK -1 2841 1541 5 1417 378 200 0 13 chr1 109083119 109083195 -88112237 - RMER3D-int LTR ERVK -1354 1488 1414 5 1417 850 67 0 0 chr1 109083195 109083314 -88112118 + L1_Mus2 LINE L1 6446 6564 -2 5 1417 227 157 20 0 chr1 109083317 109083368 -88112064 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 5 1417 513 222 21 88 chr1 109083374 109083567 -88111865 - RMER3D-int LTR ERVK -1870 456 277 5 1417 1271 211 5 46 chr1 109083567 109083940 -88111492 - RMER3D-int LTR ERVK -1456 1386 1029 5 1417 379 264 60 75 chr1 109084160 109084361 -88111071 - RMER3D-int LTR ERVK -2544 298 101 5 1417 2443 121 50 21 chr1 109084780 109085203 -88110229 - BGLII_B LTR ERVK -6 435 1 5 1417 486 0 0 0 chr1 109085809 109085863 -88109569 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1417 360 0 0 0 chr1 109086395 109086435 -88108997 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1417 180 338 0 15 chr1 109087172 109087238 -88108194 - L2 LINE L2 -3271 148 84 5 1417 32 43 0 0 chr1 109087242 109087288 -88108144 + AT_rich Low_complexity Low_complexity 1 46 0 5 1417 269 210 65 0 chr1 109087349 109087411 -88108021 + ID4 SINE ID 2 67 -16 6 1417 1058 30 8 0 chr1 109089832 109089966 -88105466 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 6 1417 184 273 55 0 chr1 109090611 109090666 -88104766 - MIRb SINE MIR -193 75 18 6 1417 1416 104 45 5 chr1 109090747 109090969 -88104463 - L1_Mus1 LINE L1 0 6567 6337 6 1417 355 278 49 22 chr1 109092039 109092223 -88103209 - L1MB7 LINE L1 -207 5977 5789 6 1417 294 256 23 0 chr1 109092714 109092800 -88102632 - L1MB7 LINE L1 -386 5798 5711 6 1417 521 321 76 5 chr1 109092888 109093085 -88102347 + B4 SINE B4 13 223 -69 6 1417 243 157 119 12 chr1 109093240 109093324 -88102108 - Lx9 LINE L1 -8 7636 7544 6 1417 504 0 0 0 chr1 109093327 109093383 -88102049 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1417 229 180 0 74 chr1 109093384 109093438 -88101994 + Kanga11a DNA Tc2 126 175 -795 6 1417 227 287 0 0 chr1 109093450 109093537 -88101895 + (TTAGGC)n Simple_repeat Simple_repeat 3 89 0 6 1417 470 211 189 0 chr1 109093537 109093712 -88101720 - Lx9 LINE L1 -153 7491 7284 6 1417 345 226 16 16 chr1 109093894 109094020 -88101412 + GA-rich Low_complexity Low_complexity 2 127 0 7 1417 270 0 0 0 chr1 109094149 109094179 -88101253 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1417 23 0 0 0 chr1 109095061 109095084 -88100348 + AT_rich Low_complexity Low_complexity 1 23 0 7 1417 269 310 29 73 chr1 109095390 109095526 -88099906 + RMER15 LTR ERVL 1 130 -445 7 1417 469 301 117 75 chr1 109095558 109095824 -88099608 + RMER15 LTR ERVL 275 551 -24 7 1417 442 301 162 5 chr1 109096160 109096370 -88099062 + L1M4 LINE L1 2622 2864 -3282 7 1417 379 261 61 6 chr1 109096372 109096553 -88098879 + L1M2 LINE L1 4732 4922 -1221 7 1417 289 354 3 57 chr1 109096592 109096874 -88098558 + G-rich Low_complexity Low_complexity 1 266 0 7 1417 286 259 116 0 chr1 109096959 109097096 -88098336 + L1M2 LINE L1 4962 5115 -1031 7 1417 10020 70 370 25 chr1 109097100 109098394 -88097038 - L1VL1 LINE L1 -150 5733 3721 7 1417 1115 95 0 0 chr1 109098394 109098541 -88096891 - B1_Mus2 SINE Alu 0 147 1 7 1417 10020 70 370 25 chr1 109098541 109099282 -88096150 - L1VL1 LINE L1 -2163 3720 2996 7 1417 36234 31 1 0 chr1 109099295 109106137 -88089295 - L1Md_T LINE L1 0 6585 1 7 1417 10475 102 14 4 chr1 109106137 109108904 -88086528 - L1VL1 LINE L1 -2869 3014 217 7 1417 349 338 60 6 chr1 109109010 109109329 -88086103 - L1MB7 LINE L1 -144 6040 5705 8 1417 325 279 75 37 chr1 109109468 109109602 -88085830 + B1_Mur3 SINE Alu 3 141 -8 8 1417 21 36 0 0 chr1 109109628 109109656 -88085776 + AT_rich Low_complexity Low_complexity 1 28 0 8 1417 2427 101 12 0 chr1 109109665 109109993 -88085439 - IAPEY_LTR LTR ERVK 0 385 54 8 1417 486 136 0 0 chr1 109110067 109110148 -88085284 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 8 1417 227 244 291 0 chr1 109110157 109110243 -88085189 - PB1D9 SINE Alu -8 112 2 8 1417 425 306 71 98 chr1 109110290 109110627 -88084805 - L1MB7 LINE L1 -1024 5122 4795 8 1417 432 243 0 0 chr1 109111024 109111135 -88084297 + CT-rich Low_complexity Low_complexity 2 112 0 8 1417 396 0 0 0 chr1 109113183 109113227 -88082205 + (TA)n Simple_repeat Simple_repeat 1 44 0 8 1417 679 301 135 66 chr1 109113400 109113555 -88081877 + ORR1E LTR MaLR 3 145 -214 8 1417 6101 98 31 2 chr1 109113555 109114423 -88081009 + RLTR13B1 LTR ERVK 1 893 0 8 1417 679 301 135 66 chr1 109114423 109114601 -88080831 + ORR1E LTR MaLR 146 359 0 8 1417 627 289 101 61 chr1 109114953 109115230 -88080202 + MLT1E3 LTR MaLR 1 288 -336 9 1417 333 226 25 34 chr1 109115256 109115375 -88080057 + L1M1 LINE L1 5684 5801 -502 9 1417 11236 170 24 9 chr1 109115434 109118567 -88076865 - Lx LINE L1 -6 6648 3477 9 1417 7314 75 5 0 chr1 109118560 109119886 -88075546 - L1Md_F2 LINE L1 -11 6571 5244 9 1417 477 0 0 0 chr1 109119886 109119939 -88075493 + (TA)n Simple_repeat Simple_repeat 2 54 0 9 1417 4852 86 14 0 chr1 109119939 109120002 -88075430 - L1Md_F2 LINE L1 -640 5243 5173 9 1417 226 61 0 0 chr1 109120006 109120039 -88075393 + L1Md_F2 LINE L1 2721 2753 -3130 9 1417 2579 52 0 0 chr1 109120042 109120372 -88075060 + L1Md_F2 LINE L1 5257 5586 -297 9 1417 7578 63 11 6 chr1 109120372 109121358 -88074074 + L1Md_F2 LINE L1 5587 6577 -5 9 1417 9743 116 4 45 chr1 109121365 109122133 -88073299 + L1VL4 LINE L1 696 1463 -2096 9 1417 3419 35 0 0 chr1 109122133 109122529 -88072903 + MTA_Mm LTR MaLR 1 396 0 9 1417 9743 114 4 56 chr1 109122529 109123047 -88072385 + L1VL4 LINE L1 1464 1937 -1622 9 1417 4703 85 30 13 chr1 109123047 109123718 -88071714 - L1Md_F2 LINE L1 0 6582 5901 9 1417 9743 114 4 56 chr1 109123718 109124452 -88070980 + L1VL4 LINE L1 1938 2622 -937 9 1417 1043 116 0 0 chr1 109124452 109124598 -88070834 + B1_Mus2 SINE Alu 1 146 -1 9 1417 8773 191 8 77 chr1 109124598 109125194 -88070238 + L1_Mm LINE L1 2970 3500 -2383 1 1417 8129 115 5 23 chr1 109125194 109127215 -88068217 + L1Md_A LINE L1 217 2421 -3462 1 1417 15018 83 2 10 chr1 109127221 109130230 -88065202 - L1Md_F LINE L1 -2577 3306 324 1 1417 257 239 39 98 chr1 109130230 109130332 -88065100 + LTR90A LTR LTR 832 927 -49 1 1417 33333 72 4 16 chr1 109130337 109136469 -88058963 - L1Md_F2 LINE L1 -15 6567 511 1 1417 13287 110 18 22 chr1 109136462 109139251 -88056181 - L1Md_A LINE L1 -2598 3285 306 1 1417 1423 123 12 17 chr1 109139280 109139520 -88055912 - L1VL2 LINE L1 -5573 762 524 1 1417 243 335 140 50 chr1 109139768 109140089 -88055343 - LTR52 LTR ERVL -58 363 14 1 1417 592 240 99 0 chr1 109140089 109140260 -88055172 - Lx6 LINE L1 -591 6869 6682 1 1417 1470 110 106 30 chr1 109140260 109140561 -88054871 - RMER17C-int LTR ERVK -577 2661 2338 1 1417 2932 111 9 0 chr1 109140582 109141049 -88054383 - L1_Mm LINE L1 -1822 4061 3591 1 1417 7531 196 88 65 chr1 109141050 109142642 -88052790 - RMER17C-int LTR ERVK -835 2403 757 1 1417 789 11 0 0 chr1 109142642 109142732 -88052700 + (GGGAGA)n Simple_repeat Simple_repeat 5 94 0 1 1417 7531 196 88 65 chr1 109142732 109143488 -88051944 - RMER17C-int LTR ERVK -2482 756 1 1 1417 733 215 33 52 chr1 109143488 109143661 -88051771 - RMER17C LTR ERVK 0 410 245 1 1417 216 0 0 0 chr1 109143661 109143685 -88051747 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1 1417 733 215 33 52 chr1 109143685 109143722 -88051710 - RMER17C LTR ERVK -166 244 204 1 1417 10603 137 31 7 chr1 109143726 109144201 -88051231 - RLTR22_Mur LTR ERVK -21 1827 1341 1 1417 279 0 0 0 chr1 109144201 109144232 -88051200 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1417 369 0 0 0 chr1 109144232 109144272 -88051160 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1417 10603 137 31 7 chr1 109144272 109145580 -88049852 - RLTR22_Mur LTR ERVK -508 1340 4 1 1417 201 161 0 0 chr1 109145581 109145612 -88049820 + polypurine Low_complexity Low_complexity 1 31 0 1 1417 526 240 27 50 chr1 109145612 109145871 -88049561 - RMER17C LTR ERVK -157 253 1 1 1417 660 339 13 0 chr1 109145876 109146115 -88049317 - Lx5 LINE L1 -686 6364 6123 1 1417 1537 179 112 3 chr1 109146342 109146656 -88048776 + RLTR1 LTR ERV1 277 624 0 1 1417 924 227 13 30 chr1 109146667 109146903 -88048529 - Lx6 LINE L1 -1430 6030 5799 1 1417 3823 224 109 1 chr1 109146909 109147820 -88047612 - RMER1B Other Other -14 1052 44 1 1417 4024 59 12 4 chr1 109148346 109148854 -88046578 - L1Md_F2 LINE L1 -2 6580 6069 1 1417 1672 217 67 7 chr1 109149663 109150094 -88045338 - Lx6 LINE L1 -140 5740 5284 1 1417 568 188 99 6 chr1 109150914 109151085 -88044347 - Lx6 LINE L1 -589 5291 5105 1 1417 907 219 55 74 chr1 109151093 109151349 -88044083 + RMER10B LTR ERVL 148 398 0 1 1417 378 0 0 0 chr1 109151985 109152027 -88043405 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1417 22 0 0 0 chr1 109153347 109153369 -88042063 + AT_rich Low_complexity Low_complexity 1 22 0 1 1417 3982 108 0 9 chr1 109153375 109153946 -88041486 - L1_Mus2 LINE L1 -3 6563 5998 1 1417 8596 75 9 10 chr1 109153957 109155928 -88039504 - L1Md_F2 LINE L1 -13 6569 4605 1 1417 13901 104 3 0 chr1 109155922 109158215 -88037217 - L1_Mus2 LINE L1 -556 6011 3713 1 1417 7695 61 1 3 chr1 109158226 109159832 -88035600 - L1Md_F3 LINE L1 -11 6573 4972 1 1417 8839 196 109 1 chr1 109159829 109162601 -88032831 - L1_Mus2 LINE L1 -2153 3733 725 1 1417 292 315 8 0 chr1 109162607 109162737 -88032695 - L1_Mus2 LINE L1 -5811 805 675 1 1417 651 256 6 157 chr1 109162856 109163180 -88032252 - L1VL1 LINE L1 -6104 318 44 1 1417 3917 166 29 5 chr1 109163216 109164037 -88031395 - Lx6 LINE L1 -1369 4508 3668 1 1417 6833 196 21 14 chr1 109164029 109164865 -88030567 + Lx2 LINE L1 4334 5157 -726 1 1417 4364 12 0 0 chr1 109164865 109165347 -88030085 + LTRIS_Mm LTR ERV1 1 482 0 1 1417 6833 157 30 7 chr1 109165347 109166789 -88028643 + Lx2 LINE L1 5158 6644 -353 1 1417 1157 157 14 9 chr1 109166791 109167010 -88028422 + Lx2 LINE L1 6778 6997 0 1 1417 21 36 0 0 chr1 109167455 109167483 -88027949 + AT_rich Low_complexity Low_complexity 1 28 0 1 1417 24 32 0 0 chr1 109167516 109167547 -88027885 + AT_rich Low_complexity Low_complexity 1 31 0 1 1417 227 342 0 13 chr1 109167547 109167624 -88027808 + ID4 SINE ID 3 78 -5 1 1417 219 186 0 0 chr1 109171982 109172025 -88023407 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1 1417 5094 95 1 8 chr1 109174037 109174751 -88020681 + L1Md_F2 LINE L1 5861 6569 -13 1 1417 2821 143 8 0 chr1 109175440 109175943 -88019489 + L1_Mur1 LINE L1 2253 2759 -3127 1 1417 4704 133 61 11 chr1 109175957 109176765 -88018667 + Lx2 LINE L1 6149 6996 -1 1 1417 369 0 0 0 chr1 109176857 109176898 -88018534 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1417 343 300 114 30 chr1 109176928 109177261 -88018171 + L1M2 LINE L1 5415 5775 -525 1 1417 1085 98 0 12 chr1 109177286 109177452 -88017980 + (TCTCCC)n Simple_repeat Simple_repeat 3 166 0 1 1417 1934 226 162 18 chr1 109177472 109178090 -88017342 - RMER1B Other Other -307 759 53 1 1417 791 204 16 6 chr1 109179450 109179632 -88015800 - L1_Mur3 LINE L1 -140 5740 5557 1 1417 622 301 57 0 chr1 109179619 109179828 -88015604 + Lx6 LINE L1 7213 7433 -27 1 1417 2477 177 27 55 chr1 109180067 109180592 -88014840 - RLTR28 LTR ERVL -14 510 1 1 1417 3770 224 61 85 chr1 109180644 109182107 -88013325 - RMER3D-int LTR ERVK -1 2841 1414 1 1417 876 59 0 0 chr1 109182107 109182226 -88013206 + L1_Mus2 LINE L1 6446 6564 -2 1 1417 240 143 0 0 chr1 109182235 109182277 -88013155 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1417 497 221 26 45 chr1 109182319 109182475 -88012957 - RMER3D-int LTR ERVK -1897 429 277 1 1417 1083 203 48 48 chr1 109182475 109182847 -88012585 - RMER3D-int LTR ERVK -1456 1386 1015 1 1418 392 245 70 85 chr1 109183052 109183253 -88012179 - RMER3D-int LTR ERVK -2544 298 101 1 1418 2377 128 49 26 chr1 109183669 109184094 -88011338 - BGLII_B LTR ERVK -6 435 1 1 1418 225 344 107 31 chr1 109184394 109184553 -88010879 - MTD LTR MaLR -15 404 234 1 1418 363 23 0 0 chr1 109184700 109184744 -88010688 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1418 181 338 0 15 chr1 109186031 109186097 -88009335 - L2 LINE L2 -3271 148 84 1 1418 34 55 0 0 chr1 109186097 109186152 -88009280 + AT_rich Low_complexity Low_complexity 1 55 0 1 1418 235 264 68 14 chr1 109186215 109186288 -88009144 + ID4 SINE ID 2 78 -5 1 1418 24 0 0 0 chr1 109187434 109187458 -88007974 + AT_rich Low_complexity Low_complexity 1 24 0 1 1418 423 0 0 0 chr1 109188697 109188744 -88006688 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1418 915 79 93 0 chr1 109189205 109189344 -88006088 - L1Md_F2 LINE L1 -732 5850 5699 1 1418 26537 90 19 86 chr1 109189649 109196310 -87999122 - L1Md_F2 LINE L1 -6 6576 393 1 1418 4682 138 13 13 chr1 109196313 109197714 -87997718 - L1Md_F LINE L1 -4118 1765 365 1 1418 200 34 0 33 chr1 109198311 109198341 -87997091 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1418 27 0 0 0 chr1 109199069 109199096 -87996336 + AT_rich Low_complexity Low_complexity 1 27 0 1 1418 331 346 30 11 chr1 109200477 109200746 -87994686 - L1M2 LINE L1 -3068 3075 2802 1 1418 245 122 0 24 chr1 109200770 109200812 -87994620 + Lx2 LINE L1 359 399 -6258 1 1418 18084 175 71 7 chr1 109200823 109202688 -87992744 + Lx2 LINE L1 911 2796 -3090 1 1418 298 39 19 38 chr1 109202688 109202741 -87992691 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 1 1418 18084 181 65 6 chr1 109202741 109206581 -87988851 + Lx2 LINE L1 2797 6996 -1 1 1418 488 286 44 18 chr1 109206740 109206968 -87988464 + L1_Rod LINE L1 3109 3342 -2505 1 1418 825 236 5 35 chr1 109206974 109207172 -87988260 - MTC LTR MaLR -8 413 222 1 1418 1877 226 65 59 chr1 109207151 109207795 -87987637 - MTC-int LTR MaLR -422 836 104 1 1418 275 295 5 117 chr1 109207799 109207995 -87987437 + L1M2 LINE L1 3365 3538 -2605 1 1418 738 274 0 0 chr1 109208065 109208218 -87987214 + B3 SINE B2 1 153 -63 1 1418 271 262 31 39 chr1 109208292 109208419 -87987013 + L1_Rod LINE L1 5092 5217 -630 1 1418 285 234 191 0 chr1 109208461 109208555 -87986877 + MT-int LTR MaLR 80 191 -907 1 1418 351 0 0 0 chr1 109208569 109208608 -87986824 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1418 498 278 151 40 chr1 109208620 109208951 -87986481 + L1MA4 LINE L1 5409 5774 -526 1 1418 404 19 19 0 chr1 109208951 109209004 -87986428 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1 1418 498 278 151 40 chr1 109209004 109209102 -87986330 + L1MA4 LINE L1 5775 5886 -414 1 1418 357 310 27 11 chr1 109210298 109210484 -87984948 - L1MB7 LINE L1 -207 5977 5789 1 1418 251 275 33 0 chr1 109211065 109211156 -87984276 - L1MB7 LINE L1 -386 5798 5705 1 1418 555 344 70 0 chr1 109211231 109211446 -87983986 + B4A SINE B4 5 234 -58 1 1418 23 0 0 0 chr1 109211515 109211538 -87983894 + AT_rich Low_complexity Low_complexity 1 23 0 1 1418 303 155 106 12 chr1 109211591 109211676 -87983756 - Lx9 LINE L1 -10 7634 7542 1 1418 456 19 0 0 chr1 109211676 109211729 -87983703 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1418 225 0 0 0 chr1 109211729 109211753 -87983679 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1418 458 221 188 0 chr1 109211913 109212094 -87983338 - Lx9 LINE L1 -153 7491 7277 1 1418 303 212 0 42 chr1 109212274 109212392 -87983040 + GA-rich Low_complexity Low_complexity 3 115 0 1 1418 639 0 0 0 chr1 109212513 109212584 -87982848 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1418 23 0 0 0 chr1 109212618 109212641 -87982791 + AT_rich Low_complexity Low_complexity 1 23 0 1 1418 240 331 22 73 chr1 109213794 109213931 -87981501 + RMER15 LTR ERVL 1 130 -445 1 1418 528 307 154 9 chr1 109214002 109214229 -87981203 + RMER15 LTR ERVL 299 558 -17 1 1418 390 293 185 0 chr1 109214551 109214756 -87980676 + L1M4 LINE L1 2622 2864 -3282 1 1418 375 253 73 0 chr1 109214758 109214936 -87980496 + L1MA6 LINE L1 4732 4922 -1221 1 1418 283 370 3 30 chr1 109215037 109215364 -87980068 + GA-rich Low_complexity Low_complexity 1 318 0 1 1418 366 279 82 0 chr1 109215483 109215630 -87979802 + L1MA6 LINE L1 4962 5120 -1023 1 1418 3382 132 16 16 chr1 109215882 109216435 -87978997 - RLTR1D LTR ERV1 -16 589 37 1 1418 1197 259 65 30 chr1 109216621 109217221 -87978211 + L1MA6 LINE L1 5530 6150 -150 1 1418 3681 161 64 11 chr1 109217247 109217904 -87977528 - RLTR17 LTR ERVK 0 692 1 1 1418 232 279 123 0 chr1 109218159 109218281 -87977151 + L1MB4 LINE L1 5505 5641 -542 1 1418 3449 90 106 0 chr1 109218438 109218936 -87976496 - L1_Mus1 LINE L1 -1 6566 6016 1 1418 3911 94 34 0 chr1 109218970 109219565 -87975867 + L1_Mm LINE L1 3812 4426 -1457 1 1418 282 259 66 48 chr1 109219559 109219601 -87975831 + L1MB4 LINE L1 5799 5836 -344 1 1418 3129 34 0 0 chr1 109219601 109219958 -87975474 - IAPEY2_LTR LTR ERVK 0 357 1 1 1418 282 259 66 48 chr1 109219958 109220081 -87975351 + L1MB4 LINE L1 5837 5967 -213 1 1418 778 87 0 19 chr1 109220576 109220682 -87974750 - B2_Mm2 SINE B2 -80 115 12 1 1418 899 85 0 8 chr1 109220722 109220853 -87974579 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 1 1418 291 200 0 0 chr1 109220866 109220921 -87974511 - MTD LTR MaLR -2 417 363 1 1418 1123 211 22 4 chr1 109220918 109221146 -87974286 - MTD LTR MaLR -187 232 1 1 1418 1851 276 37 73 chr1 109221146 109221845 -87973587 - MTD-int LTR MaLR 0 1258 585 1 1418 4378 162 8 38 chr1 109222258 109223158 -87972274 + L1Md_A LINE L1 439 1311 -5413 1 1418 28653 100 5 8 chr1 109223147 109228169 -87967263 + L1Md_F2 LINE L1 584 5586 -297 1 1418 6981 94 3 5 chr1 109228170 109229155 -87966277 + L1Md_F2 LINE L1 5588 6570 -12 1 1418 370 267 146 9 chr1 109229161 109229373 -87966059 + L1_Rod LINE L1 1051 1291 -6317 1 1418 239 259 32 86 chr1 109229376 109229420 -87966012 + LTR48 LTR ERV1 37 75 -712 1 1418 673 259 57 58 chr1 109229420 109229811 -87965621 + RLTR16 LTR ERVK 1 509 -25 1 1418 1247 205 10 49 chr1 109229982 109230387 -87965045 + L1_Rod LINE L1 1337 1725 -4122 1 1418 5256 115 29 14 chr1 109230389 109231986 -87963446 + L1VL4 LINE L1 64 1689 -1870 2 1418 6753 112 35 3 chr1 109231985 109233156 -87962276 + L1_Mus4 LINE L1 5393 6636 0 2 1418 225 0 0 0 chr1 109233173 109233198 -87962234 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 1418 716 189 69 0 chr1 109233198 109233373 -87962059 + L1_Rod LINE L1 1715 1901 -3946 1 1418 239 195 8 56 chr1 109233377 109233502 -87961930 + (CACCAT)n Simple_repeat Simple_repeat 2 120 0 2 1418 428 287 44 44 chr1 109233503 109233685 -87961747 + HAL1-2a_MD LINE L1 2326 2507 -517 2 1418 462 240 148 74 chr1 109233754 109233823 -87961609 + L1_Rod LINE L1 2012 2075 -3772 1 1418 1149 62 7 0 chr1 109233823 109233969 -87961463 + B1_Mm SINE Alu 1 147 0 2 1418 462 240 148 74 chr1 109233969 109234210 -87961222 + L1_Rod LINE L1 2076 2345 -3502 1 1418 1967 240 65 46 chr1 109234209 109234309 -87961123 + L1_Rod LINE L1 2716 2816 -3031 1 1418 207 0 0 0 chr1 109234309 109234332 -87961100 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1418 1967 240 65 46 chr1 109234332 109235105 -87960327 + L1_Rod LINE L1 2817 3605 -2242 1 1418 216 0 0 65 chr1 109235105 109235121 -87960311 + (GGAAA)n Simple_repeat Simple_repeat 5 20 0 2 1418 1380 62 0 0 chr1 109235121 109235300 -87960132 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 2 1418 216 0 0 65 chr1 109235300 109235314 -87960118 + (GGAAA)n Simple_repeat Simple_repeat 1 13 0 2 1418 506 150 20 0 chr1 109235314 109235414 -87960018 + GA-rich Low_complexity Low_complexity 2 103 0 2 1418 1132 271 38 16 chr1 109235452 109236033 -87959399 + L1M3 LINE L1 3942 4575 -1565 2 1418 944 231 10 29 chr1 109236033 109236238 -87959194 + RLTR30 LTR ERV1 17 217 -162 2 1418 739 184 125 11 chr1 109236260 109236436 -87958996 + RLTR30 LTR ERV1 184 379 0 2 1418 1266 261 42 26 chr1 109236437 109236509 -87958923 + L1_Rod LINE L1 4521 4594 -1253 1 1418 1773 169 21 59 chr1 109236509 109236849 -87958583 + ORR1A2 LTR MaLR 1 327 0 2 1418 1266 261 42 26 chr1 109236849 109237280 -87958152 + L1_Rod LINE L1 4595 5032 -815 1 1418 315 336 82 24 chr1 109237346 109237429 -87958003 + Lx9 LINE L1 6103 6189 -1284 2 1418 306 0 0 0 chr1 109237429 109237463 -87957969 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1418 637 297 45 7 chr1 109237463 109237708 -87957724 + Lx9 LINE L1 6190 6593 -1051 2 1418 315 346 145 5 chr1 109238389 109238575 -87956857 + Charlie1a DNA MER1_type 29 240 -1215 2 1418 1928 222 50 5 chr1 109238669 109239068 -87956364 + MTD LTR MaLR 3 419 0 2 1418 183 274 30 61 chr1 109239360 109239426 -87956006 - L2 LINE L2 -1044 2375 2312 2 1418 365 264 113 0 chr1 109240299 109240405 -87955027 - B1F SINE Alu -8 141 24 2 1418 354 344 55 0 chr1 109240405 109240427 -87955005 - ID_B1 SINE B4 -8 216 82 2 1418 609 310 31 8 chr1 109240466 109240726 -87954706 - Charlie1a DNA MER1_type -177 1278 1013 2 1418 423 317 12 23 chr1 109240848 109241019 -87954413 + CT-rich Low_complexity Low_complexity 4 172 0 2 1418 2870 87 8 5 chr1 109241019 109241414 -87954018 + MTA_Mm LTR MaLR 1 396 0 2 1418 382 326 0 43 chr1 109241414 109241593 -87953839 + polypyrimidine Low_complexity Low_complexity 1 171 0 2 1418 1622 212 32 27 chr1 109241600 109242008 -87953424 + RMER17C LTR ERVK 1 410 0 2 1418 4829 176 65 27 chr1 109242008 109243103 -87952329 + RMER17C-int LTR ERVK 1 1136 -2102 2 1418 9902 123 62 26 chr1 109243103 109244574 -87950858 + RMER17C-int LTR ERVK 1349 2875 -363 2 1418 333 0 0 0 chr1 109244574 109244611 -87950821 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1418 9902 123 62 26 chr1 109244611 109244962 -87950470 + RMER17C-int LTR ERVK 2876 3237 -1 2 1418 1453 207 47 25 chr1 109244962 109245160 -87950272 + RMER17C LTR ERVK 1 214 -196 2 1418 297 0 0 0 chr1 109245160 109245193 -87950239 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1418 1453 207 47 25 chr1 109245193 109245395 -87950037 + RMER17C LTR ERVK 215 409 -1 2 1418 283 321 0 28 chr1 109245411 109245520 -87949912 + CT-rich Low_complexity Low_complexity 4 109 0 2 1418 396 201 32 109 chr1 109246135 109246251 -87949181 + Lx6 LINE L1 7317 7435 -25 2 1418 576 0 0 0 chr1 109246251 109246315 -87949117 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1418 396 201 32 109 chr1 109246315 109246354 -87949078 + Lx6 LINE L1 7436 7460 0 2 1418 1543 229 88 23 chr1 109246694 109247079 -87948353 + MTD LTR MaLR 1 410 -9 2 1418 597 40 0 0 chr1 109248267 109248343 -87947089 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1418 203 296 0 0 chr1 109249158 109249212 -87946220 + CT-rich Low_complexity Low_complexity 6 59 0 2 1418 303 278 110 9 chr1 109249285 109249394 -87946038 - MLT1G LTR MaLR -16 575 456 2 1418 856 283 124 21 chr1 109249725 109250202 -87945230 - L1MC2 LINE L1 -26 6318 5793 2 1418 243 335 111 12 chr1 109250202 109250625 -87944807 - L1MC LINE L1 -504 5840 5376 2 1418 334 288 66 6 chr1 109250639 109250823 -87944609 - L1_Mur2 LINE L1 -1756 4124 3930 2 1418 288 70 0 0 chr1 109252686 109252729 -87942703 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1418 2483 53 0 12 chr1 109252739 109253063 -87942369 - L1Md_F2 LINE L1 -5 6577 6258 2 1418 703 284 23 46 chr1 109253364 109253582 -87941850 - ID_B1 SINE B4 -8 216 4 2 1418 231 232 0 0 chr1 109253653 109253709 -87941723 - L1MC LINE L1 -1035 5409 5354 2 1418 24 0 0 0 chr1 109253729 109253753 -87941679 + AT_rich Low_complexity Low_complexity 1 24 0 2 1418 633 271 69 15 chr1 109253756 109253958 -87941474 - B3 SINE B2 0 216 4 2 1418 5784 82 6 16 chr1 109256079 109256877 -87938555 + L1_Mus2 LINE L1 5776 6565 -1 2 1418 600 14 0 0 chr1 109256886 109256955 -87938477 + (GAA)n Simple_repeat Simple_repeat 2 70 0 2 1418 324 0 0 0 chr1 109257315 109257351 -87938081 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1418 265 333 62 0 chr1 109257419 109257515 -87937917 + LTR16E2 LTR ERVL 465 566 -2 2 1418 267 219 0 0 chr1 109259275 109259371 -87936061 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 1418 253 294 0 0 chr1 109259387 109259479 -87935953 + CT-rich Low_complexity Low_complexity 2 93 0 2 1418 1054 101 0 33 chr1 109260359 109260512 -87934920 + B1_Mus1 SINE Alu 1 148 0 2 1418 208 98 49 0 chr1 109260515 109260556 -87934876 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1418 399 341 11 42 chr1 109262599 109262789 -87932643 - MLT1L LTR MaLR -12 598 415 2 1418 574 345 107 29 chr1 109263849 109264512 -87930920 - L2 LINE L2 -337 3082 2368 2 1418 468 146 0 0 chr1 109264680 109264769 -87930663 + (GGGAGA)n Simple_repeat Simple_repeat 2 90 0 2 1418 448 296 35 58 chr1 109264795 109264967 -87930465 - ORR1E LTR MaLR -182 177 10 2 1418 1236 156 4 4 chr1 109265272 109265497 -87929935 - Lx LINE L1 0 6654 6430 2 1418 1493 237 15 0 chr1 109266351 109266693 -87928739 - Lx5 LINE L1 -1 7049 6703 2 1418 188 281 105 0 chr1 109266833 109266890 -87928542 - MIRc SINE MIR -78 190 128 2 1418 265 338 83 30 chr1 109267080 109267248 -87928184 + MIRb SINE MIR 63 239 -29 2 1418 228 301 0 0 chr1 109267883 109267956 -87927476 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 2 1418 399 303 32 24 chr1 109268179 109268304 -87927128 + B1F2 SINE Alu 5 130 -19 2 1418 192 122 171 0 chr1 109269210 109269251 -87926181 + MIRc SINE MIR 71 118 -150 2 1418 207 100 0 0 chr1 109270125 109270155 -87925277 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1418 279 0 0 0 chr1 109270270 109270301 -87925131 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1418 440 316 88 62 chr1 109270329 109270602 -87924830 - B4 SINE B4 -12 280 1 2 1418 423 0 0 0 chr1 109270780 109270827 -87924605 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1418 1976 151 28 0 chr1 109270922 109271240 -87924192 - ORR1A2 LTR MaLR 0 327 1 2 1418 311 188 14 8 chr1 109271911 109272009 -87923423 + B1_Mur2 SINE Alu 64 131 -18 2 1418 290 218 0 0 chr1 109272021 109272076 -87923356 + B1_Mus2 SINE Alu 64 118 -29 2 1418 848 319 29 18 chr1 109272325 109272603 -87922829 + B4A SINE B4 8 288 -4 2 1418 333 0 0 0 chr1 109272625 109272662 -87922770 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1418 387 0 0 0 chr1 109272689 109272732 -87922700 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1418 222 316 114 0 chr1 109272735 109272814 -87922618 - RSINE1 SINE B4 -18 147 60 2 1418 705 188 125 53 chr1 109272851 109273059 -87922373 - URR1A DNA MER1_type 0 226 4 2 1418 918 320 53 8 chr1 109277274 109277633 -87917799 - Lx8 LINE L1 -178 7295 6921 2 1418 683 287 87 15 chr1 109277897 109278162 -87917270 - RMER15 LTR ERVL 0 575 292 2 1418 838 249 41 33 chr1 109278146 109278473 -87916959 - MLT2D LTR ERVL -118 346 12 2 1418 422 220 0 21 chr1 109278486 109278579 -87916853 + B2_Mm2 SINE B2 1 91 -104 2 1418 2227 290 99 26 chr1 109278581 109280164 -87915268 + Lx9 LINE L1 5148 7000 -644 2 1418 2495 74 0 0 chr1 109280310 109280636 -87914796 - L1_Mus1 LINE L1 -1 6566 6241 2 1418 546 340 67 59 chr1 109280645 109281070 -87914362 + Lx9 LINE L1 6879 7441 -203 2 1418 396 0 0 0 chr1 109281382 109281426 -87914006 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1418 342 325 48 24 chr1 109282107 109282274 -87913158 - LTR78 LTR ERV1 -23 1281 1111 2 1418 2383 249 48 6 chr1 109282404 109282950 -87912482 + Lx6 LINE L1 6892 7460 0 2 1418 293 301 105 0 chr1 109283083 109283236 -87912196 + L1M5 LINE L1 4664 4832 -1314 2 1418 386 305 77 32 chr1 109286325 109286565 -87908867 - MIR SINE MIR 0 262 22 2 1418 1835 193 94 22 chr1 109286884 109287255 -87908177 - Lx5 LINE L1 -185 6865 6468 2 1418 21 0 0 0 chr1 109287401 109287422 -87908010 + AT_rich Low_complexity Low_complexity 1 21 0 2 1418 401 243 18 27 chr1 109287451 109287561 -87907871 + B2_Mm2 SINE B2 70 178 -17 2 1418 36153 33 2 7 chr1 109287916 109292925 -87902507 + L1Md_T LINE L1 614 5586 -297 2 1418 8291 38 0 0 chr1 109292925 109293919 -87901513 + L1Md_T LINE L1 5587 6580 -2 2 1418 442 236 0 54 chr1 109293973 109294121 -87901311 + Lx9 LINE L1 7471 7610 -34 2 1418 476 240 98 76 chr1 109294601 109294826 -87900606 - L1MA6 LINE L1 -33 6267 6038 2 1418 342 244 0 37 chr1 109294978 109295059 -87900373 + B3A SINE B2 2 79 -119 2 1418 342 0 0 0 chr1 109295083 109295121 -87900311 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1418 237 370 138 9 chr1 109295306 109295524 -87899908 - MIR SINE MIR -2 260 15 2 1418 660 271 104 31 chr1 109298428 109298687 -87896745 + MER2 DNA MER2_type 2 279 -66 2 1418 276 365 40 27 chr1 109299648 109299797 -87895635 + MER58A DNA MER1_type 9 159 -65 2 1418 191 146 24 0 chr1 109300533 109300574 -87894858 + (CATCC)n Simple_repeat Simple_repeat 2 43 0 2 1418 882 135 5 33 chr1 109300585 109300769 -87894663 + (CATCC)n Simple_repeat Simple_repeat 1 179 0 2 1418 198 150 0 0 chr1 109301099 109301139 -87894293 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2 1418 232 216 40 13 chr1 109301213 109301288 -87894144 - Lx7 LINE L1 0 7696 7620 2 1418 234 338 0 14 chr1 109301606 109301675 -87893757 - ID4 SINE ID 0 83 16 3 1418 231 61 0 0 chr1 109301972 109302005 -87893427 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1418 324 232 0 0 chr1 109302171 109302296 -87893136 + CT-rich Low_complexity Low_complexity 2 126 0 3 1418 611 156 28 0 chr1 109302767 109302908 -87892524 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 1418 1521 57 0 20 chr1 109303281 109303477 -87891955 + B2_Mm1t SINE B2 2 193 0 3 1418 204 67 0 0 chr1 109303773 109303803 -87891629 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 3 1418 29 28 0 0 chr1 109303810 109303846 -87891586 + AT_rich Low_complexity Low_complexity 1 36 0 3 1418 371 268 63 31 chr1 109304302 109304429 -87891003 - RSINE1 SINE B4 -22 143 13 3 1418 672 206 33 0 chr1 109305130 109305310 -87890122 + Lx9 LINE L1 7457 7642 -2 3 1418 324 0 0 0 chr1 109305687 109305723 -87889709 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1418 1039 267 70 3 chr1 109306782 109307068 -87888364 - MTE2a LTR MaLR 0 379 75 3 1418 1078 171 89 27 chr1 109307069 109307328 -87888104 + Lx9 LINE L1 7370 7644 0 3 1418 1028 86 0 21 chr1 109307335 109307478 -87887954 + B1_Mm SINE Alu 4 143 -4 3 1418 365 0 0 22 chr1 109307480 109307526 -87887906 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 3 1418 369 0 0 0 chr1 109307538 109307579 -87887853 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1418 337 222 125 0 chr1 109307584 109307656 -87887776 - MTE2a LTR MaLR -298 81 1 3 1418 304 253 0 0 chr1 109307989 109308068 -87887364 - L1MC4a LINE L1 -1905 5977 5899 3 1418 12156 119 14 25 chr1 109308092 109310032 -87885400 - RMER16-int LTR ERVK -818 4588 2670 3 1418 4895 178 31 46 chr1 109310027 109310386 -87885046 - RMER16-int LTR ERVK -4395 1011 668 3 1418 216 0 0 0 chr1 109310386 109310410 -87885022 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1418 4895 178 31 46 chr1 109310410 109311076 -87884356 - RMER16-int LTR ERVK -4739 667 1 3 1418 1437 190 72 68 chr1 109311076 109311479 -87883953 - RMER16 LTR ERVK 0 533 1 3 1418 1159 139 5 40 chr1 109311923 109312125 -87883307 + B2_Mm2 SINE B2 1 195 0 3 1418 201 237 0 0 chr1 109312957 109313016 -87882416 + CT-rich Low_complexity Low_complexity 3 61 0 3 1418 298 106 0 0 chr1 109313105 109313152 -87882280 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 3 1418 776 191 0 6 chr1 109313153 109313327 -87882105 + CT-rich Low_complexity Low_complexity 3 175 0 3 1418 1078 95 0 0 chr1 109313359 109313506 -87881926 - B1_Mus1 SINE Alu 0 148 2 3 1419 318 358 40 93 chr1 109314535 109314760 -87880672 + LTR88a LTR Gypsy 604 816 0 3 1419 344 192 22 37 chr1 109317732 109317867 -87877565 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 3 1419 203 268 109 40 chr1 109318018 109318119 -87877313 - MIR SINE MIR -112 150 43 3 1419 25 65 0 0 chr1 109319025 109319071 -87876361 + AT_rich Low_complexity Low_complexity 1 46 0 3 1419 211 50 0 70 chr1 109320402 109320445 -87874987 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 3 1419 614 266 0 7 chr1 109322026 109322166 -87873266 - B1_Mur1 SINE Alu -10 139 1 3 1419 7375 109 18 0 chr1 109322238 109323497 -87871935 - Lx LINE L1 0 6654 5367 3 1419 233 75 25 0 chr1 109324156 109324196 -87871236 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1419 198 0 0 0 chr1 109325347 109325369 -87870063 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1419 21 36 0 0 chr1 109325947 109325975 -87869457 + AT_rich Low_complexity Low_complexity 1 28 0 3 1419 504 363 63 62 chr1 109326574 109326881 -87868551 - B4 SINE B4 -11 281 2 3 1419 460 211 0 66 chr1 109329227 109329349 -87866083 - L1MA7 LINE L1 -6 6285 6172 3 1419 273 224 68 34 chr1 109330719 109330807 -87864625 - ORR1E LTR MaLR 0 359 269 3 1419 27 49 0 0 chr1 109331517 109331558 -87863874 + AT_rich Low_complexity Low_complexity 1 41 0 3 1419 21 0 0 0 chr1 109332117 109332138 -87863294 + AT_rich Low_complexity Low_complexity 1 21 0 3 1419 333 0 0 0 chr1 109333395 109333432 -87862000 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1419 2046 320 92 17 chr1 109333516 109334674 -87860758 - Lx9 LINE L1 -205 7439 6195 3 1419 1947 239 93 97 chr1 109334708 109335831 -87859601 - RMER1B Other Other -3 1063 1 3 1419 1249 250 77 9 chr1 109335891 109336299 -87859133 - RMER1B Other Other -651 415 43 3 1419 677 295 96 21 chr1 109336818 109337299 -87858133 + L1M3 LINE L1 3397 3913 -2227 3 1419 2688 86 11 3 chr1 109337327 109337699 -87857733 - L1_Mus3 LINE L1 -7 6631 6257 3 1419 4084 75 43 0 chr1 109337699 109338283 -87857149 + L1_Mus3 LINE L1 5641 6249 -387 3 1419 616 91 121 0 chr1 109338482 109338581 -87856851 + BC1_Mm scRNA scRNA 3 113 -39 3 1419 755 39 10 0 chr1 109338650 109338753 -87856679 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 3 1419 272 273 74 17 chr1 109338807 109338982 -87856450 + L1M3 LINE L1 4233 4417 -1723 3 1419 1573 199 25 89 chr1 109338997 109339400 -87856032 - ORR1C1 LTR MaLR 0 378 2 3 1419 4037 254 96 30 chr1 109339401 109340687 -87854745 - ORR1C1-int LTR MaLR 0 1370 1 3 1419 857 204 0 80 chr1 109340687 109340874 -87854558 - ORR1C1 LTR MaLR 0 384 213 3 1419 214 244 0 0 chr1 109341437 109341482 -87853950 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 3 1419 32 0 0 0 chr1 109342777 109342809 -87852623 + AT_rich Low_complexity Low_complexity 1 32 0 3 1419 24 0 0 0 chr1 109343752 109343776 -87851656 + AT_rich Low_complexity Low_complexity 1 24 0 3 1419 221 208 28 0 chr1 109346321 109346393 -87849039 + (TTTA)n Simple_repeat Simple_repeat 4 77 0 3 1419 183 359 39 93 chr1 109346447 109346576 -87848856 - MIR SINE MIR -62 200 79 3 1419 315 0 0 0 chr1 109346964 109346999 -87848433 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1419 674 226 62 0 chr1 109347414 109347560 -87847872 - B3 SINE B2 -3 213 59 3 1419 22 35 0 0 chr1 109347773 109347802 -87847630 + AT_rich Low_complexity Low_complexity 1 29 0 3 1419 316 184 22 22 chr1 109347812 109347901 -87847531 - Lx9 LINE L1 0 7644 7556 3 1419 317 43 0 42 chr1 109349572 109349620 -87845812 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 3 1419 2388 54 102 0 chr1 109350249 109350563 -87844869 - ORR1A0 LTR MaLR 0 346 1 3 1419 13303 52 13 14 chr1 109350563 109351482 -87843950 - ORR1A0-int LTR MaLR 0 1792 873 3 1419 3321 38 8 5 chr1 109351482 109351884 -87843548 - L1Md_F3 LINE L1 -11 6573 6171 3 1419 13303 52 13 14 chr1 109351884 109352758 -87842674 - ORR1A0-int LTR MaLR -920 872 1 3 1419 2847 52 9 0 chr1 109352758 109353101 -87842331 - ORR1A0 LTR MaLR 0 346 1 3 1419 2090 228 55 37 chr1 109353266 109353944 -87841488 + L1_Rod LINE L1 4518 5207 -640 3 1419 314 80 0 0 chr1 109354193 109354243 -87841189 - Lx9 LINE L1 -696 6948 6899 3 1419 213 247 20 49 chr1 109354367 109354469 -87840963 + A-rich Low_complexity Low_complexity 4 102 0 3 1419 452 157 11 0 chr1 109354886 109354985 -87840447 + Lx5 LINE L1 930 1029 -5628 3 1419 6685 166 63 40 chr1 109354980 109356769 -87838663 + Lx5 LINE L1 5194 7050 0 3 1419 297 323 78 0 chr1 109356931 109357102 -87838330 + Lx9 LINE L1 7142 7452 -192 3 1419 3676 158 24 31 chr1 109357273 109357912 -87837520 + RLTR17 LTR ERVK 1 634 -58 3 1419 7655 46 5 3 chr1 109358193 109359138 -87836294 + L1Md_F2 LINE L1 5636 6582 0 3 1419 225 0 0 0 chr1 109359806 109359831 -87835601 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1419 2823 185 18 9 chr1 109359930 109360475 -87834957 - Lx LINE L1 -6 6648 6099 3 1419 9957 173 9 21 chr1 109360503 109360600 -87834832 - L1_Mm LINE L1 -2 5881 5794 3 1419 4011 38 0 0 chr1 109360600 109361078 -87834354 - L1Md_A LINE L1 0 6582 6105 3 1419 9957 173 9 21 chr1 109361078 109361183 -87834249 - L1_Mm LINE L1 -90 5793 5708 3 1419 2044 130 55 35 chr1 109361183 109361581 -87833851 - Lx LINE L1 -5 6649 6244 3 1419 9957 173 9 21 chr1 109361581 109363367 -87832065 - L1_Mm LINE L1 -176 5707 3914 3 1419 990 96 20 0 chr1 109363489 109363635 -87831797 - L1_Mus2 LINE L1 -1 6565 6417 3 1419 1811 43 4 4 chr1 109363635 109363868 -87831564 + L1_Mus2 LINE L1 6127 6359 -207 3 1419 435 19 0 0 chr1 109363888 109363940 -87831492 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1419 304 318 53 94 chr1 109364904 109365074 -87830358 - RSINE1 SINE B4 0 165 3 3 1419 185 0 0 39 chr1 109365505 109365531 -87829901 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3 1419 3705 197 44 43 chr1 109365537 109366479 -87828953 - RMER13B LTR ERVK -11 897 1 3 1419 193 250 0 59 chr1 109366771 109366839 -87828593 + L3 LINE CR1 3811 3874 -615 3 1419 694 249 0 82 chr1 109367312 109367518 -87827914 + Lx6 LINE L1 6691 6879 -581 3 1419 845 250 64 16 chr1 109367560 109367747 -87827685 + RMER13A LTR ERVK 665 860 0 3 1419 315 49 0 0 chr1 109368153 109368194 -87827238 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 3 1419 23 54 0 0 chr1 109369890 109369927 -87825505 + AT_rich Low_complexity Low_complexity 1 37 0 3 1419 698 265 42 36 chr1 109370099 109370291 -87825141 - B3A SINE B2 0 198 6 3 1419 302 240 228 10 chr1 109370346 109370447 -87824985 + PB1D10 SINE Alu 3 125 -2 3 1419 234 216 50 30 chr1 109370450 109370504 -87824928 + (CAAAC)n Simple_repeat Simple_repeat 3 56 0 3 1419 183 80 0 0 chr1 109370504 109370529 -87824903 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1419 234 216 50 30 chr1 109370529 109370574 -87824858 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 3 1419 198 0 0 0 chr1 109371394 109371416 -87824016 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 1419 837 176 51 79 chr1 109371444 109371660 -87823772 - Lx2B LINE L1 -710 6290 6081 3 1419 451 313 122 11 chr1 109371689 109371967 -87823465 - L1MC4 LINE L1 -4984 1231 923 3 1419 1010 82 7 0 chr1 109371977 109372112 -87823320 - B1_Mus1 SINE Alu 0 148 13 3 1419 2209 205 112 9 chr1 109372175 109372852 -87822580 + Lx9 LINE L1 6891 7637 -7 3 1419 266 250 0 18 chr1 109373167 109373277 -87822155 + (CATA)n Simple_repeat Simple_repeat 4 111 0 3 1419 286 234 137 11 chr1 109373360 109373455 -87821977 - Charlie22a DNA MER1_type -1 490 384 3 1419 1714 259 32 8 chr1 109373506 109373974 -87821458 + RLTR16 LTR ERVK 1 479 -26 3 1419 261 0 0 0 chr1 109374710 109374739 -87820693 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1419 486 0 0 0 chr1 109374739 109374792 -87820640 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1419 248 288 62 12 chr1 109375716 109375797 -87819635 - PB1D10 SINE Alu -7 110 26 3 1419 244 314 96 19 chr1 109377433 109377537 -87817895 - PB1D10 SINE Alu -5 112 1 3 1419 333 100 0 0 chr1 109378130 109378180 -87817252 + (CACG)n Simple_repeat Simple_repeat 1 50 0 3 1419 749 316 76 4 chr1 109378582 109378815 -87816617 - B4A SINE B4 0 292 64 3 1419 321 265 45 6 chr1 109378847 109379003 -87816429 - L1ME2 LINE L1 -269 5895 5733 4 1419 234 0 0 0 chr1 109379115 109379141 -87816291 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1419 1493 330 67 11 chr1 109379207 109380099 -87815333 - Lx8 LINE L1 -153 7320 6379 4 1419 366 222 12 12 chr1 109380118 109380200 -87815232 - RMER15 LTR ERVL -60 515 434 4 1419 5292 144 42 21 chr1 109380243 109380807 -87814625 + Lx4B LINE L1 4839 5440 -437 4 1419 1073 92 0 0 chr1 109380807 109380948 -87814484 + B1_Mus1 SINE Alu 1 141 -7 4 1419 365 0 22 0 chr1 109380950 109380995 -87814437 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 4 1419 5292 171 72 24 chr1 109380995 109381653 -87813779 + Lx4B LINE L1 5441 6087 -971 4 1419 360 0 0 0 chr1 109381653 109381693 -87813739 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1419 4002 231 135 30 chr1 109381693 109382263 -87813169 + Lx4B LINE L1 6088 6798 -260 4 1419 2528 169 34 34 chr1 109382263 109382791 -87812641 + RLTR11A LTR ERVK 1 528 0 4 1419 4002 231 135 30 chr1 109382791 109383012 -87812420 + Lx4B LINE L1 6799 7023 -35 4 1419 1634 215 118 57 chr1 109383036 109383529 -87811903 + RLTR11A LTR ERVK 1 523 -5 4 1419 520 225 18 0 chr1 109383590 109383701 -87811731 + Lx7 LINE L1 6761 6873 -823 4 1419 213 39 0 0 chr1 109383711 109383737 -87811695 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1419 785 237 204 18 chr1 109383738 109384013 -87811419 + Lx6 LINE L1 7131 7456 -4 4 1419 261 311 23 83 chr1 109384425 109384558 -87810874 + MT2B LTR ERVL 154 278 -323 4 1419 714 213 15 0 chr1 109384442 109384578 -87810854 + B1_Mur1 SINE Alu 7 144 -5 4 1419 518 284 118 86 chr1 109384977 109385458 -87809974 + RMER13A LTR ERVK 26 575 -52 4 1419 1099 262 78 39 chr1 109386189 109386571 -87808861 + MTD LTR MaLR 6 402 -17 4 1419 468 307 70 4 chr1 109386638 109386708 -87808724 + L1_Mur3 LINE L1 5193 5266 -614 4 1419 270 0 0 0 chr1 109386708 109386738 -87808694 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1419 468 307 70 4 chr1 109386738 109386909 -87808523 + L1_Mur3 LINE L1 5267 5449 -431 4 1419 225 65 0 0 chr1 109386912 109386943 -87808489 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1419 240 35 0 0 chr1 109386943 109386971 -87808461 + (CATA)n Simple_repeat Simple_repeat 3 31 0 4 1419 221 264 19 0 chr1 109386974 109387027 -87808405 + B3 SINE B2 2 55 -161 4 1419 620 231 0 11 chr1 109387297 109387472 -87807960 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 4 1419 1464 279 125 36 chr1 109387608 109388341 -87807091 + RMER1C Other Other 529 1315 -27 4 1419 326 289 64 42 chr1 109388411 109388635 -87806797 + Lx9 LINE L1 5818 6044 -1600 4 1419 180 0 0 0 chr1 109388777 109388797 -87806635 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1419 256 188 27 55 chr1 109388885 109388958 -87806474 - U2 snRNA snRNA -117 71 1 4 1419 703 273 136 42 chr1 109389141 109389428 -87806004 - MTE2b LTR MaLR -9 370 57 4 1419 2123 232 133 10 chr1 109389428 109390264 -87805168 + Lx9 LINE L1 6579 7480 -164 4 1419 411 21 0 0 chr1 109390264 109390312 -87805120 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 4 1419 2123 232 116 11 chr1 109390312 109390393 -87805039 + Lx9 LINE L1 7481 7608 -36 4 1419 21 0 0 0 chr1 109390407 109390428 -87805004 + AT_rich Low_complexity Low_complexity 1 21 0 4 1419 725 297 41 10 chr1 109390806 109391003 -87804429 - B3 SINE B2 -5 211 9 4 1419 625 193 7 7 chr1 109391441 109391587 -87803845 + GA-rich Low_complexity Low_complexity 3 148 0 4 1419 1029 123 0 16 chr1 109391602 109391784 -87803648 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 1419 21 57 0 0 chr1 109393355 109393390 -87802042 + AT_rich Low_complexity Low_complexity 1 35 0 4 1419 990 324 106 6 chr1 109394687 109395047 -87800385 - MTD LTR MaLR -16 403 8 4 1419 288 234 143 0 chr1 109395054 109395131 -87800301 + MER5A1 DNA MER1_type 43 130 -36 4 1419 466 286 9 0 chr1 109395127 109395239 -87800193 + ID_B1 SINE B4 112 224 0 4 1419 309 327 52 23 chr1 109396196 109396368 -87799064 + MER90 LTR ERV1 7 183 -392 4 1419 1663 243 119 50 chr1 109396912 109397449 -87797983 + RMER15 LTR ERVL 2 575 0 4 1419 288 257 27 13 chr1 109397458 109397533 -87797899 - B4 SINE B4 -20 272 197 4 1419 744 256 143 37 chr1 109397760 109398137 -87797295 + MTD LTR MaLR 1 417 -2 4 1419 318 154 0 0 chr1 109398430 109398482 -87796950 + HAL1-3A_ME LINE L1 1969 2020 -838 4 1419 183 100 0 0 chr1 109398484 109398514 -87796918 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1419 330 26 0 0 chr1 109398523 109398562 -87796870 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1419 369 0 0 0 chr1 109398562 109398602 -87796830 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1419 291 236 14 0 chr1 109398603 109398675 -87796757 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 4 1419 216 0 0 0 chr1 109398943 109398967 -87796465 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1419 360 0 0 0 chr1 109399671 109399711 -87795721 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1419 1947 324 73 36 chr1 109399801 109400822 -87794610 - Lx8 LINE L1 -5 7468 6410 4 1419 197 346 46 8 chr1 109401803 109401934 -87793498 - L2 LINE L2 -958 2461 2326 4 1419 25 31 0 0 chr1 109402333 109402365 -87793067 + AT_rich Low_complexity Low_complexity 1 32 0 4 1419 22 0 0 0 chr1 109403242 109403264 -87792168 + AT_rich Low_complexity Low_complexity 1 22 0 4 1419 2305 132 6 3 chr1 109403279 109403637 -87791795 - RLTR15 LTR ERVK 0 359 1 4 1419 253 368 0 0 chr1 109404216 109404284 -87791148 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 4 1419 3545 28 12 5 chr1 109405059 109405488 -87789944 - L1Md_F2 LINE L1 0 6582 6151 4 1419 253 251 103 92 chr1 109405678 109405862 -87789570 + RLTR21 LTR ERVK 1070 1255 -317 4 1419 204 339 56 40 chr1 109406326 109406452 -87788980 - MIRc SINE MIR -137 131 4 4 1419 21 0 0 0 chr1 109407540 109407561 -87787871 + AT_rich Low_complexity Low_complexity 1 21 0 4 1419 29 98 0 0 chr1 109408417 109408509 -87786923 + AT_rich Low_complexity Low_complexity 1 92 0 4 1419 720 307 5 0 chr1 109409466 109409655 -87785777 + ID_B1 SINE B4 1 190 -34 4 1419 424 267 16 41 chr1 109410511 109410632 -87784800 + RSINE1 SINE B4 43 160 -5 4 1419 213 222 37 0 chr1 109411394 109411448 -87783984 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1419 288 311 33 0 chr1 109411771 109411861 -87783571 - MER45A DNA Tip100 0 178 86 4 1419 3182 50 0 2 chr1 109415035 109415432 -87780000 - L1Md_F3 LINE L1 -251 6333 5938 4 1419 1946 41 0 16 chr1 109415432 109415682 -87779750 + L1Md_F3 LINE L1 6324 6569 -15 4 1419 989 184 77 5 chr1 109415938 109416145 -87779287 - URR1B DNA MER1_type -2 223 2 4 1419 456 165 8 8 chr1 109416597 109416730 -87778702 + (TA)n Simple_repeat Simple_repeat 1 133 0 4 1419 330 229 58 29 chr1 109416885 109417056 -87778376 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 4 1419 797 113 27 0 chr1 109417093 109417243 -87778189 + (TCTA)n Simple_repeat Simple_repeat 1 154 0 4 1419 264 247 92 60 chr1 109417824 109418009 -87777423 - L1MA9 LINE L1 -81 6231 6041 4 1419 220 64 35 93 chr1 109418361 109418447 -87776985 + T-rich Low_complexity Low_complexity 2 82 0 4 1419 253 261 101 11 chr1 109418471 109418560 -87776872 - B1_Mus1 SINE Alu -44 104 8 4 1419 200 250 0 0 chr1 109420069 109420113 -87775319 + MIRb SINE MIR 155 198 -70 4 1419 428 165 69 23 chr1 109420763 109420893 -87774539 - Lx9 LINE L1 0 7644 7509 4 1419 207 0 0 0 chr1 109420893 109420916 -87774516 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1419 400 72 14 14 chr1 109420916 109420985 -87774447 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1419 1151 237 102 0 chr1 109422294 109422568 -87772864 + MTD LTR MaLR 118 419 0 4 1419 1464 172 137 15 chr1 109422573 109422915 -87772517 - ORR1C2 LTR MaLR 0 384 1 4 1419 2780 48 78 0 chr1 109423286 109423643 -87771789 + IAPEY_LTR LTR ERVK 1 385 0 4 1419 470 185 0 16 chr1 109423942 109424063 -87771369 + CT-rich Low_complexity Low_complexity 3 121 0 4 1419 327 286 0 0 chr1 109424096 109424173 -87771259 - ID4_ SINE ID -4 79 3 4 1419 406 327 0 9 chr1 109424175 109424286 -87771146 - PB1D10 SINE Alu -3 114 5 4 1419 262 333 57 21 chr1 109426548 109426689 -87768743 + MIR3 SINE MIR 38 183 -25 4 1419 1069 296 17 3 chr1 109426860 109427148 -87768284 + B4 SINE B4 1 292 0 4 1419 213 39 0 0 chr1 109427172 109427198 -87768234 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1419 183 146 0 0 chr1 109428723 109428764 -87766668 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1419 362 200 134 24 chr1 109429298 109429380 -87766052 + B1_Mur2 SINE Alu 54 144 -5 4 1419 339 336 48 0 chr1 109429581 109429685 -87765747 + B1F1 SINE Alu 1 109 -40 4 1419 1099 89 0 20 chr1 109429824 109429973 -87765459 + B1_Mus1 SINE Alu 3 148 0 4 1419 213 146 0 0 chr1 109429974 109430022 -87765410 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1419 587 14 14 0 chr1 109430106 109430178 -87765254 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1419 360 0 0 0 chr1 109430178 109430217 -87765215 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1419 994 310 110 22 chr1 109430641 109431050 -87764382 - MER21B LTR ERV1 -134 729 285 4 1419 441 0 0 0 chr1 109432470 109432519 -87762913 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1419 2919 70 57 2 chr1 109433132 109433533 -87761899 + L1_Mus1 LINE L1 6145 6567 0 4 1419 191 61 30 0 chr1 109434441 109434474 -87760958 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1419 758 205 36 0 chr1 109434474 109434669 -87760763 + Lx9 LINE L1 7416 7617 -27 4 1419 378 0 0 0 chr1 109434669 109434711 -87760721 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1419 315 0 0 0 chr1 109434711 109434745 -87760687 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1419 1004 157 353 34 chr1 109435334 109435624 -87759808 - RLTR23 LTR ERV1 -47 383 1 4 1419 529 281 65 30 chr1 109435625 109435794 -87759638 - MLT1C LTR MaLR -271 196 22 4 1419 472 284 22 49 chr1 109435810 109436036 -87759396 + L1MC4 LINE L1 7452 7671 -371 4 1419 1386 185 98 41 chr1 109436744 109437114 -87758318 + RLTR20B1 LTR ERVK 1 469 -94 5 1419 477 0 0 0 chr1 109437114 109437167 -87758265 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1419 351 0 0 0 chr1 109437167 109437205 -87758227 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1419 532 232 48 85 chr1 109437205 109437298 -87758134 + RLTR20B1 LTR ERVK 470 562 -1 5 1419 322 311 14 0 chr1 109438262 109438336 -87757096 + B3A SINE B2 88 162 -36 5 1419 3296 38 5 0 chr1 109439152 109439546 -87755886 - MTA_Mm LTR MaLR 0 396 1 5 1419 6832 80 7 77 chr1 109439546 109440651 -87754781 - MTA_Mm-int LTR MaLR 0 1098 99 5 1419 283 296 122 17 chr1 109440717 109440889 -87754543 + L3 LINE CR1 4105 4294 -195 5 1419 331 65 48 0 chr1 109441068 109441130 -87754302 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 5 1419 6680 112 28 48 chr1 109441130 109442207 -87753225 - Lx LINE L1 -8 6646 5592 5 1419 21 36 0 0 chr1 109442430 109442458 -87752974 + AT_rich Low_complexity Low_complexity 1 28 0 5 1419 186 167 0 0 chr1 109443830 109443866 -87751566 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 5 1419 186 43 0 0 chr1 109444391 109444414 -87751018 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1419 22 80 0 0 chr1 109444654 109444704 -87750728 + AT_rich Low_complexity Low_complexity 1 50 0 5 1420 1839 249 83 23 chr1 109446955 109447362 -87748070 + RLTR20A LTR ERVK 1 438 -103 5 1420 816 11 0 0 chr1 109447362 109447455 -87747977 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 1420 1839 249 83 23 chr1 109447455 109447531 -87747901 + RLTR20A LTR ERVK 439 512 -29 5 1420 6858 162 16 0 chr1 109447532 109448814 -87746618 - L1_Mur2 LINE L1 -307 5570 4268 5 1420 854 205 42 15 chr1 109448851 109449146 -87746286 - L1_Mur2 LINE L1 -5433 1224 900 5 1420 962 271 84 87 chr1 109449580 109450109 -87745323 + RMER13A LTR ERVK 1 546 -81 5 1420 300 0 25 0 chr1 109450109 109450149 -87745283 - L1Md_F2 LINE L1 -638 5944 5904 5 1420 4990 52 0 2 chr1 109450149 109450764 -87744668 + L1Md_F2 LINE L1 5969 6582 0 5 1420 3140 296 66 19 chr1 109451405 109452660 -87742772 - RMER1A Other Other -10 1020 1 5 1420 1045 244 109 10 chr1 109452638 109452949 -87742483 - RMER1B Other Other -680 386 45 5 1420 30 27 0 0 chr1 109453867 109453904 -87741528 + AT_rich Low_complexity Low_complexity 1 37 0 5 1420 276 243 0 0 chr1 109454134 109454208 -87741224 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1420 323 309 0 0 chr1 109454358 109454439 -87740993 - ID4_ SINE ID -1 82 2 5 1420 852 148 33 7 chr1 109455107 109455257 -87740175 - URR1A DNA MER1_type 0 226 73 5 1420 195 42 0 0 chr1 109456567 109456591 -87738841 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1420 185 86 57 0 chr1 109457096 109457131 -87738301 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 5 1420 1660 16 0 5 chr1 109457274 109457463 -87737969 + B2_Mm1t SINE B2 1 188 -5 5 1420 243 215 0 0 chr1 109457626 109457691 -87737741 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1420 217 163 43 11 chr1 109457741 109457834 -87737598 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 5 1420 450 214 50 10 chr1 109458200 109458299 -87737133 - URR1A DNA MER1_type -119 107 5 5 1420 284 0 28 0 chr1 109458307 109458343 -87737089 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1420 1416 279 40 38 chr1 109458358 109458832 -87736600 - Lx6 LINE L1 -26 7434 6960 5 1420 2396 260 118 36 chr1 109459049 109459827 -87735605 - RMER13A LTR ERVK -18 842 1 5 1420 2693 221 102 9 chr1 109460117 109460164 -87735268 + Lx9 LINE L1 6805 6853 -791 5 1420 1428 157 171 28 chr1 109460164 109460485 -87734947 + ORR1B2 LTR MaLR 1 367 0 5 1420 2693 221 102 9 chr1 109460485 109461205 -87734227 + Lx9 LINE L1 6854 7643 -1 5 1420 298 232 0 5 chr1 109461296 109461405 -87734027 + L1M2 LINE L1 2765 2872 -3973 5 1420 2494 142 27 20 chr1 109461405 109461843 -87733589 + BGLII_B LTR ERVK 1 441 0 5 1420 450 0 0 0 chr1 109462480 109462530 -87732902 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1420 11935 256 48 39 chr1 109463308 109465246 -87730186 + MYSERV6-int LTR ERVK 470 2422 -6537 5 1420 5345 111 55 38 chr1 109465246 109465343 -87730089 - RLTR13D6 LTR ERVK 0 902 805 5 1420 1034 75 0 22 chr1 109465343 109465479 -87729953 + B1_Mus1 SINE Alu 5 137 -11 5 1420 273 29 0 0 chr1 109465479 109465513 -87729919 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1420 5345 111 55 38 chr1 109465513 109466301 -87729131 - RLTR13D6 LTR ERVK -98 804 2 5 1420 11935 256 48 39 chr1 109466301 109466562 -87728870 + MYSERV6-int LTR ERVK 2423 2681 -6278 5 1420 279 0 0 0 chr1 109466562 109466593 -87728839 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1420 11935 262 53 41 chr1 109466593 109468758 -87726674 + MYSERV6-int LTR ERVK 2682 4587 -4372 5 1420 1122 161 31 0 chr1 109468794 109469018 -87726414 - Lx LINE L1 -4 6650 6420 5 1420 926 238 75 78 chr1 109469093 109469504 -87725928 + MYSERV6-int LTR ERVK 493 902 -1424 5 1420 235 279 69 11 chr1 109469508 109469595 -87725837 + RMER4A LTR ERVK 291 382 -84 5 1420 2101 144 44 21 chr1 109469596 109470030 -87725402 + MYSERV6-int LTR ERVK 1000 1443 -883 5 1420 221 0 0 33 chr1 109470034 109470064 -87725368 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1420 1143 58 0 0 chr1 109470064 109470201 -87725231 - B1_Mm SINE Alu -10 137 1 5 1420 307 340 0 0 chr1 109470235 109470341 -87725091 + Lx7 LINE L1 7207 7312 -384 5 1420 281 296 16 23 chr1 109470344 109470472 -87724960 + GA-rich Low_complexity Low_complexity 2 128 0 5 1420 467 17 17 0 chr1 109471425 109471485 -87723947 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1420 270 256 0 13 chr1 109471588 109471667 -87723765 + HAL1 LINE L1 1379 1456 -1051 5 1420 347 324 46 26 chr1 109472074 109472226 -87723206 - MLT1C LTR MaLR -5 462 308 5 1420 7047 188 103 19 chr1 109472361 109474095 -87721337 + ORR1B1-int LTR MaLR 39 1771 -192 5 1420 272 105 0 0 chr1 109474137 109474174 -87721258 + ORR1B1 LTR MaLR 286 322 -7 5 1420 3957 182 54 55 chr1 109474174 109474780 -87720652 + RLTR25A LTR ERVK 1 577 -526 5 1420 3029 83 13 0 chr1 109474780 109475175 -87720257 - MTB LTR MaLR 0 400 1 5 1420 3957 207 78 62 chr1 109475175 109475552 -87719880 + RLTR25A LTR ERVK 578 1028 0 5 1420 422 305 75 22 chr1 109475972 109476160 -87719272 + B4 SINE B4 5 204 -20 5 1420 421 174 0 0 chr1 109476160 109476246 -87719186 + MYSERV16_I-int LTR ERVK 249 334 -1992 5 1420 3025 145 109 20 chr1 109476236 109476934 -87718498 + MYSERV16_I-int LTR ERVK 1067 2319 -523 5 1420 1388 139 21 12 chr1 109476941 109477182 -87718250 - RLTR31A_Mm LTR ERVK -341 243 1 5 1420 1126 199 62 12 chr1 109477182 109477502 -87717930 + MYSERV16_I-int LTR ERVK 1974 2309 -17 5 1420 881 208 267 124 chr1 109477545 109477995 -87717437 + RLTR20C LTR ERVK 1 514 -20 5 1420 248 317 155 41 chr1 109479563 109479757 -87715675 - MLT1C LTR MaLR -275 320 105 5 1420 1422 234 40 38 chr1 109479786 109480132 -87715300 - MTD LTR MaLR 0 419 73 5 1420 483 326 90 34 chr1 109481094 109481538 -87713894 - Lx8 LINE L1 -31 7442 6974 5 1420 27 0 0 0 chr1 109481861 109481888 -87713544 + AT_rich Low_complexity Low_complexity 1 27 0 5 1420 26 0 0 0 chr1 109482022 109482048 -87713384 + AT_rich Low_complexity Low_complexity 1 26 0 5 1420 2362 127 24 3 chr1 109482142 109482522 -87712910 - Lx LINE L1 0 6654 6267 5 1420 318 235 104 116 chr1 109482573 109482746 -87712686 - RLTR13D3 LTR ERVK 0 1114 944 5 1420 292 143 0 0 chr1 109482990 109483032 -87712400 - B2_Mm2 SINE B2 -153 42 1 5 1420 446 172 46 0 chr1 109483391 109483478 -87711954 - MTC LTR MaLR -329 92 2 5 1420 489 299 40 20 chr1 109483478 109483625 -87711807 + RMER15 LTR ERVL 426 575 0 5 1420 816 243 13 71 chr1 109484106 109484332 -87711100 + ID_B1 SINE B4 8 220 -4 5 1420 253 172 15 15 chr1 109484377 109484442 -87710990 + GA-rich Low_complexity Low_complexity 5 69 0 5 1420 798 109 0 0 chr1 109484662 109484781 -87710651 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 1420 1107 202 131 14 chr1 109485195 109485562 -87709870 - Lx9 LINE L1 0 7644 7235 5 1420 260 302 92 14 chr1 109485577 109485718 -87709714 + Charlie7 DNA MER1_type 1643 1794 -818 5 1420 414 108 0 0 chr1 109486075 109486140 -87709292 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1420 2447 194 57 26 chr1 109488479 109488987 -87706445 - RLTR28 LTR ERVL 0 524 1 5 1420 198 225 0 0 chr1 109489823 109489903 -87705529 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1420 22 56 0 0 chr1 109490919 109490955 -87704477 + AT_rich Low_complexity Low_complexity 1 36 0 5 1420 414 0 0 0 chr1 109491189 109491235 -87704197 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1420 476 277 7 62 chr1 109491262 109491293 -87704139 - B1F1 SINE Alu -9 140 36 5 1420 244 257 124 130 chr1 109491293 109491374 -87704058 - MT2B LTR ERVL -338 263 199 5 1420 1924 219 32 28 chr1 109491374 109491877 -87703555 + RLTR16 LTR ERVK 1 505 0 5 1420 476 277 7 62 chr1 109491877 109491910 -87703522 - B1F1 SINE Alu -114 35 3 5 1420 244 257 124 130 chr1 109491910 109491956 -87703476 - MT2B LTR ERVL -403 198 104 5 1420 329 258 94 73 chr1 109492012 109492207 -87703225 - MER67C LTR ERV1 -515 196 5 5 1420 588 62 0 0 chr1 109492244 109492325 -87703107 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1420 216 97 0 0 chr1 109492579 109492610 -87702822 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1420 426 20 0 0 chr1 109492610 109492660 -87702772 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1420 489 17 0 0 chr1 109492703 109492761 -87702671 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1420 490 332 173 39 chr1 109493539 109493949 -87701483 - MLT1D LTR MaLR -34 471 7 5 1420 347 285 85 28 chr1 109495159 109495300 -87700132 + MER20 DNA MER1_type 1 149 -70 5 1420 2431 187 68 4 chr1 109495623 109496112 -87699320 - RLTR28 LTR ERVL -4 520 1 5 1420 796 197 170 0 chr1 109497743 109497931 -87697501 - URR1B DNA MER1_type -3 222 3 5 1420 7190 22 1 0 chr1 109498283 109499199 -87696233 - L1Md_F3 LINE L1 0 6584 5696 5 1420 679 36 0 0 chr1 109499199 109499283 -87696149 + L1Md_F3 LINE L1 5543 5626 -257 5 1420 182 246 197 0 chr1 109500416 109500477 -87694955 - MIR3 SINE MIR -15 193 121 1 1420 279 113 0 0 chr1 109501109 109501162 -87694270 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1420 419 321 44 13 chr1 109502833 109502991 -87692441 - MER5A1 DNA MER1_type -3 163 1 3 1420 360 0 0 0 chr1 109503006 109503046 -87692386 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1420 833 90 0 8 chr1 109504877 109505011 -87690421 + (TG)n Simple_repeat Simple_repeat 2 134 0 5 1420 28 0 0 0 chr1 109505116 109505144 -87690288 + AT_rich Low_complexity Low_complexity 1 28 0 6 1420 33 0 0 0 chr1 109506091 109506124 -87689308 + AT_rich Low_complexity Low_complexity 1 33 0 7 1420 674 288 36 49 chr1 109506197 109506588 -87688844 - Lx9 LINE L1 -155 7489 7104 8 1420 369 186 29 15 chr1 109506755 109506891 -87688541 + (TA)n Simple_repeat Simple_repeat 1 138 0 9 1420 302 338 49 11 chr1 109506900 109507166 -87688266 - L1M5 LINE L1 -331 5848 5573 1 1420 524 274 0 42 chr1 109507171 109507289 -87688143 + B1F2 SINE Alu 26 138 -11 1 1420 435 112 0 0 chr1 109507310 109507390 -87688042 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1420 262 267 10 29 chr1 109507504 109507608 -87687824 - L1M5 LINE L1 -736 5443 5342 1 1420 34 24 0 0 chr1 109507622 109507663 -87687769 + AT_rich Low_complexity Low_complexity 1 41 0 1 1420 444 311 80 26 chr1 109507676 109507940 -87687492 - L1M5 LINE L1 -897 5249 4972 1 1420 519 301 122 29 chr1 109507962 109508467 -87686965 - L1M5 LINE L1 -1268 4878 4329 1 1420 792 272 106 42 chr1 109508489 109509016 -87686416 + RMER13A LTR ERVK 255 860 0 1 1420 878 258 18 11 chr1 109509201 109509475 -87685957 + Lx9 LINE L1 7242 7517 -127 1 1420 293 242 15 15 chr1 109509486 109509616 -87685816 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1420 491 207 20 20 chr1 109509619 109509767 -87685665 + Lx9 LINE L1 7477 7624 -20 1 1420 14488 213 99 44 chr1 109509855 109513831 -87681601 - Lx6 LINE L1 -176 7284 3134 1 1420 1174 48 0 27 chr1 109513831 109513981 -87681451 - B1_Mm SINE Alu 0 147 2 1 1420 14488 206 99 33 chr1 109513981 109515957 -87679475 - Lx6 LINE L1 -2747 3133 980 1 1420 642 248 112 22 chr1 109515958 109516280 -87679152 + Lx9 LINE L1 7294 7644 0 2 1420 360 0 0 0 chr1 109517182 109517222 -87678210 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 2 1420 2190 216 65 21 chr1 109517338 109517850 -87677582 - RMER5 LTR ERV1 0 534 1 2 1420 373 320 45 34 chr1 109518208 109518386 -87677046 + MIR3 SINE MIR 18 197 -11 2 1420 249 203 102 0 chr1 109519374 109519433 -87675999 + RMER5 LTR ERV1 1 65 -469 2 1420 234 0 0 0 chr1 109519434 109519460 -87675972 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1420 208 213 33 0 chr1 109519460 109519521 -87675911 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1420 1937 201 56 27 chr1 109519521 109519965 -87675467 + RMER5 LTR ERV1 78 534 0 2 1420 1733 156 58 86 chr1 109520256 109520615 -87674817 - ORR1B1 LTR MaLR 0 394 46 2 1420 219 36 0 0 chr1 109521609 109521637 -87673795 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1420 2162 183 58 0 chr1 109521953 109522351 -87673081 + MTC LTR MaLR 1 421 0 2 1420 5223 76 101 1 chr1 109522489 109523225 -87672207 - L1_Mus3 LINE L1 -17 6621 5813 3 1420 1677 221 111 113 chr1 109523335 109523947 -87671485 - RMER19C LTR ERVK 0 611 1 3 1420 4328 134 16 18 chr1 109523947 109524835 -87670597 - MurERV4_19-int LTR ERVK 0 5780 4821 3 1420 26586 31 0 0 chr1 109524837 109528179 -87667253 + L1Md_T LINE L1 2243 5585 -298 3 1420 9014 6 0 0 chr1 109528180 109529176 -87666256 + L1Md_T LINE L1 5587 6582 0 3 1420 1173 114 49 14 chr1 109529178 109529401 -87666031 - MurERV4_19-int LTR ERVK -952 4828 4598 3 1420 354 23 0 0 chr1 109529403 109529446 -87665986 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1420 3292 41 5 0 chr1 109529569 109529963 -87665469 + MTA_Mm LTR MaLR 1 396 0 3 1420 246 333 20 59 chr1 109530029 109530131 -87665301 + Charlie4z DNA MER1_type 6 103 -64 3 1420 1205 220 38 0 chr1 109530189 109530453 -87664979 + Lx5 LINE L1 6773 7046 -4 3 1420 2822 229 75 20 chr1 109530807 109531911 -87663521 - Lx9 LINE L1 -152 7492 6328 3 1420 1653 141 107 3 chr1 109532074 109532372 -87663060 + ORR1A4 LTR MaLR 1 329 0 3 1420 21 36 0 0 chr1 109532888 109532916 -87662516 + AT_rich Low_complexity Low_complexity 1 28 0 3 1420 287 229 212 30 chr1 109534000 109534099 -87661333 - PB1D7 SINE Alu -3 117 1 4 1420 1304 226 40 9 chr1 109535507 109535833 -87659599 - RCHARR1 DNA MER1_type -3 971 636 4 1420 2186 178 45 25 chr1 109535849 109536252 -87659180 + MTC LTR MaLR 3 413 -8 4 1420 507 233 40 27 chr1 109536257 109536407 -87659025 - RCHARR1 DNA MER1_type -346 628 477 4 1420 916 340 25 11 chr1 109536417 109536699 -87658733 - B4A SINE B4 0 292 7 4 1420 1671 266 48 19 chr1 109536703 109537182 -87658250 - RCHARR1 DNA MER1_type -476 498 6 4 1420 306 356 45 8 chr1 109537398 109537531 -87657901 - B1F1 SINE Alu -8 141 4 4 1420 450 279 95 65 chr1 109537979 109538148 -87657284 + B4A SINE B4 2 175 -117 4 1420 643 221 20 20 chr1 109538153 109538301 -87657131 + B1_Mur2 SINE Alu 2 149 0 4 1420 378 0 0 0 chr1 109538709 109538751 -87656681 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1420 305 62 21 0 chr1 109539741 109539789 -87655643 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1420 296 275 57 24 chr1 109540802 109540925 -87654507 - L1MA6 LINE L1 -121 6179 6053 4 1420 564 15 0 0 chr1 109541539 109541604 -87653828 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1420 545 173 0 11 chr1 109541605 109541786 -87653646 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1420 371 287 281 9 chr1 109542875 109543092 -87652340 + B4A SINE B4 2 278 -14 5 1420 460 81 0 26 chr1 109543172 109543248 -87652184 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1420 342 0 0 0 chr1 109544142 109544180 -87651252 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1420 323 286 105 61 chr1 109544187 109544339 -87651093 - B3 SINE B2 -36 162 1 5 1420 726 12 0 0 chr1 109544603 109544686 -87650746 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1420 267 103 0 0 chr1 109544686 109544724 -87650708 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1420 5008 107 67 21 chr1 109545694 109546051 -87649381 + RMER17D LTR ERVK 1 370 -519 5 1420 1452 44 0 0 chr1 109546051 109546231 -87649201 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1420 5008 107 67 21 chr1 109546231 109546723 -87648709 + RMER17D LTR ERVK 371 889 0 5 1420 303 28 0 0 chr1 109546939 109546975 -87648457 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1420 620 26 13 0 chr1 109547522 109547600 -87647832 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1420 819 305 31 18 chr1 109547605 109547932 -87647500 - Lx9 LINE L1 -247 7397 7067 6 1420 1598 258 66 0 chr1 109547957 109548383 -87647049 + Lx9 LINE L1 6597 7050 -594 6 1420 471 35 0 0 chr1 109548549 109548606 -87646826 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1420 1087 209 117 46 chr1 109550349 109550675 -87644757 + Lx5 LINE L1 6702 7050 0 6 1420 180 0 0 0 chr1 109550757 109550777 -87644655 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1420 427 336 189 38 chr1 109550820 109551058 -87644374 - B4A SINE B4 0 292 19 6 1420 248 302 16 0 chr1 109551785 109551848 -87643584 - BC1_Mm scRNA scRNA -78 74 11 6 1420 230 309 119 0 chr1 109551847 109551931 -87643501 - PB1 SINE Alu -2 125 32 6 1420 375 313 87 0 chr1 109551987 109552102 -87643330 - PB1 SINE Alu -2 125 1 7 1420 284 325 114 0 chr1 109552337 109552460 -87642972 + L3 LINE CR1 4224 4360 -129 7 1420 180 386 107 25 chr1 109552628 109552750 -87642682 - L2b LINE L2 -18 3357 3226 7 1420 262 273 71 18 chr1 109552867 109552979 -87642453 + ID4_ SINE ID 1 118 -34 7 1420 1454 231 63 77 chr1 109553115 109553556 -87641876 - RMER10A LTR ERVL -7 435 1 7 1420 234 307 37 73 chr1 109554251 109554360 -87641072 + L2c LINE L2 3278 3382 -5 7 1420 1979 222 26 3 chr1 109554585 109554968 -87640464 - ORR1B1 LTR MaLR -2 392 1 7 1420 8685 124 20 1 chr1 109555230 109556671 -87638761 - Lx2A1 LINE L1 -89 6919 5516 7 1420 1756 153 0 0 chr1 109556667 109556948 -87638484 + L1_Mur2 LINE L1 3952 4232 -1645 7 1420 5365 36 0 3 chr1 109556972 109557611 -87637821 + L1Md_F2 LINE L1 5944 6580 -2 7 1420 618 14 0 0 chr1 109557666 109557737 -87637695 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 8 1420 228 325 0 24 chr1 109557867 109557949 -87637483 + L2 LINE L2 2805 2884 -535 8 1420 403 287 19 0 chr1 109558366 109558474 -87636958 - PB1D10 SINE Alu -7 110 1 8 1420 2423 155 109 8 chr1 109558907 109559383 -87636049 - RLTR28 LTR ERVL 0 524 1 8 1420 492 286 52 7 chr1 109562074 109562229 -87633203 + RMER5 LTR ERV1 14 175 -359 8 1420 719 272 63 31 chr1 109562274 109562364 -87633068 + RMER5 LTR ERV1 271 367 -167 8 1420 189 121 0 0 chr1 109562364 109562397 -87633035 + (TAG)n Simple_repeat Simple_repeat 3 35 0 8 1420 719 272 63 31 chr1 109562397 109562560 -87632872 + RMER5 LTR ERV1 368 531 -3 8 1420 314 123 31 0 chr1 109564486 109564551 -87630881 + (TATG)n Simple_repeat Simple_repeat 4 70 0 8 1420 327 25 0 0 chr1 109564917 109564957 -87630475 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1420 22 56 0 0 chr1 109565192 109565228 -87630204 + AT_rich Low_complexity Low_complexity 1 36 0 8 1420 22 0 0 0 chr1 109565371 109565393 -87630039 + AT_rich Low_complexity Low_complexity 1 22 0 8 1420 1669 351 119 44 chr1 109566311 109567730 -87627702 + MTE-int LTR MaLR 1 1527 -53 9 1420 418 312 93 15 chr1 109567730 109567902 -87627530 + ORR1E LTR MaLR 1 181 -189 9 1420 457 150 10 10 chr1 109567902 109568003 -87627429 + CT-rich Low_complexity Low_complexity 2 102 0 9 1420 263 301 14 0 chr1 109568004 109568077 -87627355 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 9 1420 894 304 127 17 chr1 109568187 109568549 -87626883 + MTD LTR MaLR 5 403 -18 9 1420 247 280 48 42 chr1 109569177 109569345 -87626087 - L1M5 LINE L1 -2138 4008 3840 9 1420 279 0 0 0 chr1 109569369 109569400 -87626032 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1420 550 206 190 33 chr1 109569417 109569633 -87625799 - MER67D LTR ERV1 -258 403 28 9 1420 493 253 76 0 chr1 109570739 109570897 -87624535 - Lx9 LINE L1 -1695 5949 5780 9 1420 396 59 0 0 chr1 109570967 109571018 -87624414 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 1420 7902 44 18 1 chr1 109571447 109572425 -87623007 + L1Md_F3 LINE L1 5587 6581 -3 1 1420 315 279 25 0 chr1 109572489 109572568 -87622864 - ID4 SINE ID -1 82 2 1 1420 24 53 0 0 chr1 109572734 109572772 -87622660 + AT_rich Low_complexity Low_complexity 1 38 0 1 1420 24 0 0 0 chr1 109572927 109572951 -87622481 + AT_rich Low_complexity Low_complexity 1 24 0 1 1420 190 273 0 64 chr1 109574344 109574391 -87621041 - L2b LINE L2 -12 3363 3320 1 1420 404 286 151 22 chr1 109574752 109574931 -87620501 + ORR1E LTR MaLR 110 311 -48 1 1420 498 17 0 0 chr1 109575511 109575570 -87619862 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1420 636 207 118 18 chr1 109575570 109575791 -87619641 - Lx9 LINE L1 -2 7642 7400 1 1421 180 0 0 0 chr1 109576256 109576276 -87619156 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1421 23 54 0 0 chr1 109576290 109576327 -87619105 + AT_rich Low_complexity Low_complexity 1 37 0 1 1421 261 306 121 61 chr1 109576541 109576673 -87618759 - B4A SINE B4 -152 140 1 1 1421 881 284 57 14 chr1 109577192 109577471 -87617961 + B4A SINE B4 2 292 0 1 1421 38 0 0 0 chr1 109578095 109578133 -87617299 + AT_rich Low_complexity Low_complexity 1 38 0 1 1421 661 329 114 16 chr1 109579027 109579586 -87615846 - L1ME5 LINE L1 -199 5995 5382 1 1421 2612 174 238 21 chr1 109580003 109580609 -87614823 - RMER19A LTR ERVK 0 737 1 1 1421 470 305 97 53 chr1 109580903 109581253 -87614179 - MLT1D LTR MaLR 0 505 112 1 1421 1641 109 85 19 chr1 109581320 109581591 -87613841 - MTB LTR MaLR 0 400 112 1 1421 2585 63 2 125 chr1 109583308 109583724 -87611708 + RLTR10B2 LTR ERVK 1 365 0 1 1421 1319 73 6 6 chr1 109583724 109583902 -87611530 + RLTR10-int LTR ERVK 1 178 -7403 1 1421 347 231 37 23 chr1 109584022 109584241 -87611191 + G-rich Low_complexity Low_complexity 1 222 0 1 1421 496 125 0 59 chr1 109584241 109584377 -87611055 + GA-rich Low_complexity Low_complexity 1 128 0 1 1421 355 67 0 0 chr1 109584377 109584422 -87611010 + RLTR10-int LTR ERVK 93 137 -6405 1 1421 2895 44 0 0 chr1 109584425 109584766 -87610666 + RLTR10-int LTR ERVK 652 992 -995 1 1421 443 327 27 23 chr1 109584929 109585186 -87610246 + RLTR10-int LTR ERVK 1309 1566 -6015 1 1421 996 113 191 0 chr1 109585198 109585366 -87610066 + IAP-d-int LTR ERVK 5004 5203 -1339 1 1421 2048 125 48 0 chr1 109590144 109590457 -87604975 - MTB LTR MaLR -72 328 1 1 1421 235 365 53 53 chr1 109591200 109591313 -87604119 + Lx8 LINE L1 7124 7236 -237 1 1421 22 0 0 0 chr1 109591455 109591477 -87603955 + AT_rich Low_complexity Low_complexity 1 22 0 1 1421 573 289 6 59 chr1 109591572 109591741 -87603691 + MER58A DNA MER1_type 45 204 -20 1 1421 196 371 54 48 chr1 109593017 109593164 -87602268 + MER5B DNA MER1_type 7 154 -24 1 1421 397 304 198 50 chr1 109593231 109593595 -87601837 - MER77 LTR ERVL -75 532 115 1 1421 306 288 50 0 chr1 109593919 109593999 -87601433 - MIRb SINE MIR -171 97 14 1 1421 405 81 0 0 chr1 109594720 109594782 -87600650 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1421 834 279 64 57 chr1 109596045 109596452 -87598980 + LTR37A LTR ERV1 14 423 -3 1 1421 505 259 34 50 chr1 109597215 109597376 -87598056 + B3A SINE B2 42 189 -27 1 1421 474 18 0 0 chr1 109597428 109597483 -87597949 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1421 21 0 0 0 chr1 109599071 109599092 -87596340 + AT_rich Low_complexity Low_complexity 1 21 0 1 1421 653 287 139 30 chr1 109599926 109600192 -87595240 + MTEa LTR MaLR 85 379 0 1 1421 635 272 6 0 chr1 109600242 109600400 -87595032 - RSINE1 SINE B4 -4 161 3 1 1421 565 296 81 24 chr1 109601994 109602240 -87593192 + MTD LTR MaLR 11 270 -149 1 1421 384 284 12 0 chr1 109602301 109602382 -87593050 + MTD LTR MaLR 270 351 -68 1 1421 1405 242 27 29 chr1 109603795 109603964 -87591468 + ORR1D1 LTR MaLR 1 168 -206 1 1421 392 87 0 28 chr1 109603964 109604035 -87591397 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 1 1421 1405 242 27 29 chr1 109604035 109604240 -87591192 + ORR1D1 LTR MaLR 169 374 0 1 1421 1585 169 133 56 chr1 109604677 109605015 -87590417 + ORR1C1 LTR MaLR 15 378 0 1 1421 550 363 51 29 chr1 109605258 109605570 -87589862 - Lx8 LINE L1 -75 7398 7080 1 1421 1100 262 60 7 chr1 109607679 109607796 -87587636 + MTD LTR MaLR 3 119 -300 1 1421 284 0 28 0 chr1 109607796 109607832 -87587600 + (ATTG)n Simple_repeat Simple_repeat 3 39 0 1 1421 1100 273 86 18 chr1 109607832 109608080 -87587352 + MTD LTR MaLR 120 403 -4 1 1421 927 155 0 138 chr1 109609095 109609320 -87586112 + B2_Mm2 SINE B2 1 194 -1 1 1421 28 0 0 0 chr1 109609626 109609654 -87585778 + AT_rich Low_complexity Low_complexity 1 28 0 1 1421 25 51 0 0 chr1 109610121 109610160 -87585272 + AT_rich Low_complexity Low_complexity 1 39 0 1 1421 261 0 0 0 chr1 109611607 109611636 -87583796 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1421 333 0 0 0 chr1 109612767 109612804 -87582628 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1421 309 222 43 0 chr1 109613675 109613792 -87581640 + GA-rich Low_complexity Low_complexity 3 124 0 1 1421 372 43 0 0 chr1 109614223 109614269 -87581163 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1421 460 296 111 14 chr1 109614303 109614447 -87580985 + RSINE1 SINE B4 3 160 -5 1 1421 741 261 196 11 chr1 109616749 109617070 -87578362 - MTC LTR MaLR 0 419 44 1 1421 238 267 146 45 chr1 109618091 109618201 -87577231 + LTR81A LTR ERV1? 53 173 -1177 1 1421 443 281 133 16 chr1 109618932 109619120 -87576312 + B4A SINE B4 9 218 -74 1 1421 185 264 37 19 chr1 109621494 109621548 -87573884 - MER5A DNA MER1_type -125 64 10 1 1421 393 22 0 0 chr1 109621737 109621783 -87573649 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1421 235 344 62 10 chr1 109623962 109624059 -87571373 + L2b LINE L2 3274 3411 -15 1 1421 614 85 0 11 chr1 109624104 109624199 -87571233 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 1 1421 249 33 0 0 chr1 109624225 109624255 -87571177 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1421 613 347 19 0 chr1 109624380 109624596 -87570836 + B4A SINE B4 1 220 -72 1 1421 459 35 0 0 chr1 109624650 109624707 -87570725 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1421 180 264 0 70 chr1 109625072 109625129 -87570303 - L2 LINE L2 -829 2590 2538 1 1421 3520 100 13 2 chr1 109625452 109626002 -87569430 - L1_Mus1 LINE L1 -1403 4480 3925 1 1421 9348 88 8 1 chr1 109626000 109627859 -87567573 + L1_Mus1 LINE L1 4466 6332 -235 1 1421 604 284 117 4 chr1 109627878 109628108 -87567324 + MER67C LTR ERV1 147 402 -309 1 1421 382 266 224 8 chr1 109628112 109628289 -87567143 + B3A SINE B2 1 208 -8 1 1421 221 153 27 27 chr1 109628475 109628549 -87566883 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1421 368 265 34 13 chr1 109628555 109628704 -87566728 + (TATG)n Simple_repeat Simple_repeat 3 154 0 1 1421 552 152 5 68 chr1 109628711 109628902 -87566530 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1421 22 80 0 0 chr1 109629256 109629306 -87566126 + AT_rich Low_complexity Low_complexity 1 50 0 1 1421 359 353 77 21 chr1 109631902 109632096 -87563336 + MER92B LTR ERV1 1 205 -431 1 1421 628 336 78 0 chr1 109632403 109632671 -87562761 - B4 SINE B4 -2 290 2 1 1421 26 0 0 0 chr1 109633158 109633184 -87562248 + AT_rich Low_complexity Low_complexity 1 26 0 1 1421 27 29 0 0 chr1 109635610 109635644 -87559788 + AT_rich Low_complexity Low_complexity 1 34 0 1 1421 466 293 141 17 chr1 109635656 109635833 -87559599 - B3 SINE B2 -17 199 1 1 1421 1101 75 14 0 chr1 109636549 109636695 -87558737 - B1_Mus1 SINE Alu 0 148 1 1 1421 483 205 55 104 chr1 109636552 109636715 -87558717 - B4A SINE B4 -68 224 70 1 1421 657 0 0 0 chr1 109636717 109636790 -87558642 + (TTC)n Simple_repeat Simple_repeat 3 75 0 1 1421 749 147 0 6 chr1 109636790 109636897 -87558535 + (CTG)n Simple_repeat Simple_repeat 3 109 0 1 1421 1242 78 0 0 chr1 109636897 109637077 -87558355 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1421 749 147 0 6 chr1 109637077 109637140 -87558292 + (CTG)n Simple_repeat Simple_repeat 3 65 0 1 1421 271 219 12 24 chr1 109637142 109637202 -87558230 + CT-rich Low_complexity Low_complexity 27 85 0 1 1421 978 148 0 0 chr1 109637202 109637378 -87558054 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1 1421 271 219 12 24 chr1 109637378 109637401 -87558031 + polypyrimidine Low_complexity Low_complexity 3 26 0 1 1421 256 325 77 5 chr1 109637620 109637815 -87557617 - Lx9 LINE L1 -130 7514 7306 1 1421 192 97 0 0 chr1 109638183 109638214 -87557218 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1421 1144 65 0 0 chr1 109638224 109638363 -87557069 - B1_Mm SINE Alu -7 140 2 1 1421 207 339 39 23 chr1 109639059 109639189 -87556243 - MIRb SINE MIR -75 193 62 1 1421 268 75 0 0 chr1 109639423 109639463 -87555969 + RMER4B LTR ERVK 3 42 -543 1 1421 7792 106 7 33 chr1 109639465 109640380 -87555052 + Lx3A LINE L1 4906 5816 -70 1 1421 2696 116 5 2 chr1 109640380 109640777 -87554655 + MTB LTR MaLR 3 400 0 1 1421 7792 103 28 92 chr1 109640777 109640879 -87554553 + Lx3A LINE L1 5814 5907 -1074 1 1421 360 0 0 0 chr1 109640879 109640919 -87554513 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1421 7792 103 28 92 chr1 109640919 109641230 -87554202 + Lx3A LINE L1 5908 6160 -821 1 1421 595 0 129 0 chr1 109641230 109641455 -87553977 + (TAGG)n Simple_repeat Simple_repeat 1 254 0 1 1421 7792 103 28 92 chr1 109641455 109642295 -87553137 + Lx3A LINE L1 6161 6974 -7 1 1421 232 146 0 0 chr1 109642336 109642377 -87553055 - RLTR40 LTR ERVK -39 778 738 1 1421 3139 172 7 9 chr1 109642390 109642941 -87552491 + RMER4B LTR ERVK 36 585 0 1 1421 255 349 12 24 chr1 109643168 109643253 -87552179 - B1F SINE Alu -63 86 3 1 1421 515 237 256 25 chr1 109643384 109643544 -87551888 - MTD LTR MaLR -117 302 106 1 1421 340 291 148 113 chr1 109644519 109644775 -87550657 + B4 SINE B4 4 268 -24 1 1421 226 229 0 0 chr1 109644791 109644839 -87550593 + (TCTCTG)n Simple_repeat Simple_repeat 6 53 0 1 1421 720 137 0 0 chr1 109644840 109644993 -87550439 + (TC)n Simple_repeat Simple_repeat 2 154 0 1 1421 306 50 0 0 chr1 109644993 109645033 -87550399 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1421 300 388 46 31 chr1 109645897 109646091 -87549341 - MamRep38 DNA hAT -31 264 68 1 1421 301 297 32 45 chr1 109647180 109647300 -87548132 + B1F SINE Alu 33 149 0 1 1421 2967 200 59 27 chr1 109647646 109648344 -87547088 - Lx5 LINE L1 0 7050 6331 2 1421 32461 36 0 0 chr1 109648344 109653178 -87542254 - L1Md_T LINE L1 0 6582 1749 2 1421 978 9 0 0 chr1 109653178 109653285 -87542147 - U6 snRNA snRNA 0 107 1 2 1421 510 115 13 0 chr1 109653285 109653363 -87542069 - Lx5 LINE L1 -712 6338 6260 2 1421 491 220 12 12 chr1 109653364 109653525 -87541907 - ORR1A2-int LTR MaLR -1091 872 712 2 1421 1261 174 62 62 chr1 109653473 109653731 -87541701 - MT2B LTR ERVL -309 292 35 2 1421 3838 167 35 18 chr1 109653594 109654332 -87541100 - ORR1A2-int LTR MaLR -1212 751 1 2 1421 1780 165 32 16 chr1 109654336 109654650 -87540782 - ORR1A2 LTR MaLR -8 319 1 2 1421 5051 181 55 39 chr1 109654650 109656211 -87539221 - L1_Mur2 LINE L1 -3439 2438 830 2 1421 27 62 0 0 chr1 109656558 109656606 -87538826 + AT_rich Low_complexity Low_complexity 1 48 0 2 1421 238 50 0 48 chr1 109658591 109658633 -87536799 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 2 1421 249 211 52 62 chr1 109659085 109659181 -87536251 + RMER15 LTR ERVL 11 105 -470 2 1421 914 300 45 23 chr1 109659247 109659557 -87535875 + RMER15 LTR ERVL 259 575 0 2 1421 1013 100 18 6 chr1 109659933 109660104 -87535328 + (TTCC)n Simple_repeat Simple_repeat 4 176 0 2 1421 258 304 40 73 chr1 109661132 109661256 -87534176 - ID_B1 SINE B4 0 224 105 2 1421 1770 128 100 3 chr1 109661989 109662279 -87533153 + ORR1A3 LTR MaLR 1 318 -8 2 1421 418 341 89 53 chr1 109663004 109663286 -87532146 + MLT1C LTR MaLR 108 399 -68 2 1421 324 103 0 0 chr1 109664677 109664735 -87530697 + (T)n Simple_repeat Simple_repeat 1 58 0 2 1421 639 78 0 0 chr1 109665574 109665664 -87529768 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1421 338 192 0 67 chr1 109665667 109665801 -87529631 + (TATATG)n Simple_repeat Simple_repeat 6 130 0 2 1421 409 358 46 69 chr1 109665853 109666093 -87529339 - B4A SINE B4 -38 254 2 2 1421 220 315 45 0 chr1 109666142 109666231 -87529201 + L2 LINE L2 2802 2894 -525 2 1421 7757 143 29 30 chr1 109666255 109668310 -87527122 - Lx4A LINE L1 0 7058 4974 2 1421 9001 134 20 50 chr1 109668310 109669906 -87525526 - RLTR22_Mur LTR ERVK 0 1848 301 2 1421 248 401 58 27 chr1 109669918 109670136 -87525296 + MLT1E2 LTR MaLR 312 540 -87 2 1421 441 0 0 0 chr1 109670136 109670185 -87525247 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1421 248 401 58 27 chr1 109670185 109670225 -87525207 + MLT1E2 LTR MaLR 541 578 -49 2 1421 1119 81 0 0 chr1 109671065 109671238 -87524194 + (TC)n Simple_repeat Simple_repeat 2 174 0 2 1421 318 26 0 0 chr1 109671238 109671276 -87524156 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1421 617 313 5 27 chr1 109672372 109672592 -87522840 - B3 SINE B2 0 216 2 2 1421 456 208 0 0 chr1 109673253 109673354 -87522078 + GA-rich Low_complexity Low_complexity 4 104 0 2 1421 6556 107 38 16 chr1 109674366 109674389 -87521043 - Lx3_Mus LINE L1 -6 7003 6987 2 1421 234 0 0 0 chr1 109674389 109674415 -87521017 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 1421 6556 107 38 16 chr1 109674415 109675428 -87520004 - Lx3_Mus LINE L1 -23 6986 5945 2 1421 207 0 0 0 chr1 109676106 109676129 -87519303 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1421 887 326 49 65 chr1 109677160 109677590 -87517842 + MT2A LTR ERVL 3 425 -108 2 1421 416 62 16 0 chr1 109677697 109677761 -87517671 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1421 248 371 63 38 chr1 109678077 109678315 -87517117 - LTR81A LTR ERV1? -906 444 201 2 1421 390 275 66 66 chr1 109680106 109680410 -87515022 - L1MCa LINE L1 -5449 1059 756 2 1421 360 111 0 0 chr1 109680714 109680768 -87514664 + (CTTA)n Simple_repeat Simple_repeat 2 55 0 2 1421 1146 62 0 0 chr1 109680768 109680912 -87514520 - B1_Mm SINE Alu -3 144 1 2 1421 4029 172 69 1 chr1 109681008 109681041 -87514391 + L1_Mur1 LINE L1 4928 4962 -924 2 1421 7172 127 33 7 chr1 109681041 109682170 -87513262 - Lx2 LINE L1 -1 6996 5839 2 1421 4029 172 69 1 chr1 109682170 109682991 -87512441 + Lx2 LINE L1 4963 5839 -47 2 1421 14604 77 4 3 chr1 109683748 109686529 -87508903 - L1Md_F2 LINE L1 -13 6569 3811 2 1421 205 357 108 33 chr1 109686819 109687181 -87508251 + L2 LINE L2 2376 2764 -655 2 1421 7778 6 3 0 chr1 109687585 109688494 -87506938 - L1Md_T LINE L1 0 6582 5671 2 1421 3654 211 44 12 chr1 109689234 109690433 -87504999 + Lx7 LINE L1 352 1593 -4287 2 1421 4336 18 0 12 chr1 109690435 109690934 -87504498 + MT2_Mm LTR ERVL 1 493 0 2 1421 45821 16 0 0 chr1 109690934 109696304 -87499128 + MERVL-int LTR ERVL 1 5371 -114 2 1421 371 111 26 53 chr1 109696304 109696380 -87499052 + ORR1A3-int LTR MaLR 567 640 -1323 2 1421 302 0 0 0 chr1 109696380 109696418 -87499014 + MERVL-int LTR ERVL 5448 5485 0 2 1421 4330 18 0 12 chr1 109696418 109696917 -87498515 + MT2_Mm LTR ERVL 1 493 0 2 1421 1730 170 103 12 chr1 109696917 109697345 -87498087 + Lx7 LINE L1 1591 2057 -3823 2 1421 7285 53 6 2 chr1 109697345 109698294 -87497138 + L1_Mus1 LINE L1 5615 6567 0 2 1421 192 158 0 0 chr1 109698351 109698389 -87497043 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 1421 5336 203 38 5 chr1 109698389 109699699 -87495733 + Lx7 LINE L1 2065 3417 -2463 2 1421 891 174 142 0 chr1 109699701 109699913 -87495519 + Lx7 LINE L1 3907 4148 -1732 2 1421 3430 199 39 15 chr1 109699979 109700772 -87494660 + Lx7 LINE L1 4986 5773 -107 2 1421 876 99 13 7 chr1 109700772 109700924 -87494508 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 2 1421 624 263 101 169 chr1 109700924 109701345 -87494087 + Lx7 LINE L1 5773 6169 -1527 2 1421 240 200 50 0 chr1 109701358 109701478 -87493954 + (TA)n Simple_repeat Simple_repeat 1 126 0 2 1421 6555 38 4 4 chr1 109701598 109702401 -87493031 + L1Md_F3 LINE L1 5782 6584 0 2 1421 837 88 0 0 chr1 109702798 109702935 -87492497 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 1421 267 31 0 0 chr1 109702935 109702966 -87492466 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1421 219 250 0 0 chr1 109703200 109703260 -87492172 + A-rich Low_complexity Low_complexity 1 60 0 2 1421 38 0 0 0 chr1 109703438 109703476 -87491956 + AT_rich Low_complexity Low_complexity 1 38 0 2 1421 1044 136 0 0 chr1 109703987 109704163 -87491269 + (TC)n Simple_repeat Simple_repeat 1 176 0 2 1421 336 191 0 0 chr1 109704166 109704250 -87491182 + CT-rich Low_complexity Low_complexity 2 85 0 2 1421 220 238 0 67 chr1 109704324 109704369 -87491063 - B1F2 SINE Alu -102 47 6 2 1421 432 314 121 26 chr1 109704405 109704595 -87490837 - B3 SINE B2 -3 213 6 2 1421 29 47 0 0 chr1 109704618 109704661 -87490771 + AT_rich Low_complexity Low_complexity 1 43 0 2 1421 6997 50 13 1 chr1 109704671 109705577 -87489855 - L1Md_F2 LINE L1 -2 6580 5664 2 1421 201 39 0 0 chr1 109705765 109705791 -87489641 + (GTTTG)n Simple_repeat Simple_repeat 4 29 0 2 1421 501 17 0 0 chr1 109706479 109706537 -87488895 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 2 1421 246 333 38 0 chr1 109706540 109706645 -87488787 - PB1D7 SINE Alu -10 110 2 2 1421 337 158 0 34 chr1 109707061 109707120 -87488312 + ORR1A4 LTR MaLR 1 57 -272 2 1421 580 118 11 0 chr1 109707113 109707206 -87488226 - ORR1A3-int LTR MaLR -1659 304 211 2 1421 260 57 0 0 chr1 109707214 109707249 -87488183 + MERVL_2A-int LTR ERVL 5717 5751 -10 2 1422 1797 199 135 23 chr1 109707292 109707766 -87487666 + ORR1A4-int LTR MaLR 646 1172 -791 2 1422 1477 208 81 65 chr1 109707767 109708198 -87487234 + RMER17B LTR ERVK 1 438 -520 2 1422 1323 224 83 26 chr1 109708218 109708742 -87486690 + RMER13B LTR ERVK 272 899 -9 2 1422 3458 171 52 98 chr1 109708753 109709588 -87485844 + ORR1A4-int LTR MaLR 1168 1963 0 2 1422 1605 166 26 64 chr1 109709588 109709831 -87485601 + ORR1A4 LTR MaLR 1 229 -100 2 1422 6619 32 3 0 chr1 109709831 109710602 -87484830 - L1Md_F2 LINE L1 -2 6580 5808 2 1422 1605 166 26 64 chr1 109710602 109710700 -87484732 + ORR1A4 LTR MaLR 230 329 0 2 1422 4811 151 25 8 chr1 109712249 109713052 -87482380 + Lx LINE L1 5838 6654 0 2 1422 646 229 48 0 chr1 109713117 109713355 -87482077 + L1MA6 LINE L1 6041 6300 0 2 1422 22 56 0 0 chr1 109713612 109713648 -87481784 + AT_rich Low_complexity Low_complexity 1 36 0 2 1422 1170 190 4 21 chr1 109715896 109716132 -87479300 + ORR1B2 LTR MaLR 9 240 -127 2 1422 219 348 0 0 chr1 109716348 109716417 -87479015 + ID_B1 SINE B4 79 147 -77 2 1422 26 0 0 0 chr1 109716613 109716639 -87478793 + AT_rich Low_complexity Low_complexity 1 26 0 2 1422 6615 124 14 6 chr1 109716786 109718349 -87477083 + Lx LINE L1 5077 6651 -3 2 1422 665 268 221 37 chr1 109718494 109718792 -87476640 + ORR1E LTR MaLR 5 357 -2 2 1422 33666 41 1 0 chr1 109719363 109725494 -87469938 + L1Md_T LINE L1 1 5589 -297 2 1422 8990 5 0 0 chr1 109725494 109726490 -87468942 + L1Md_T LINE L1 5590 6585 0 2 1422 32 43 0 0 chr1 109726490 109726536 -87468896 + AT_rich Low_complexity Low_complexity 1 46 0 2 1422 252 100 0 0 chr1 109726536 109726576 -87468856 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1422 31160 91 17 7 chr1 109726996 109732003 -87463429 + L1Md_F2 LINE L1 526 5585 -298 2 1422 7286 62 21 40 chr1 109732004 109733017 -87462415 + L1Md_F2 LINE L1 5587 6580 -2 2 1422 701 178 159 108 chr1 109733657 109733871 -87461561 + URR1B DNA MER1_type 1 225 0 2 1422 7606 65 6 1 chr1 109735865 109736839 -87458593 - L1_Mus2 LINE L1 0 6566 5588 2 1422 218 292 35 68 chr1 109738025 109738143 -87457289 + MIRb SINE MIR 149 268 0 2 1422 21 36 0 0 chr1 109738644 109738672 -87456760 + AT_rich Low_complexity Low_complexity 1 28 0 2 1422 387 0 0 0 chr1 109738932 109738975 -87456457 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1422 414 0 0 0 chr1 109738975 109739020 -87456412 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1422 489 305 0 62 chr1 109739024 109739193 -87456239 - B3 SINE B2 -35 163 5 2 1422 387 0 0 0 chr1 109739401 109739444 -87455988 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1422 552 319 59 56 chr1 109739526 109739866 -87455566 - MLT2B1 LTR ERVL -131 425 4 2 1422 682 93 19 0 chr1 109740566 109740674 -87454758 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 1422 582 291 30 37 chr1 109740677 109740841 -87454591 - B3A SINE B2 -34 164 2 2 1422 185 314 65 75 chr1 109741240 109741440 -87453992 - L2a LINE L2 -7 3419 3222 2 1422 595 321 139 30 chr1 109741494 109741831 -87453601 - ORR1D2 LTR MaLR 0 374 1 2 1422 920 234 90 55 chr1 109741831 109741978 -87453454 - ORR1D2-int LTR MaLR 0 1370 1205 2 1422 829 181 14 0 chr1 109741978 109742116 -87453316 - B1_Mus1 SINE Alu -8 140 1 2 1422 920 234 90 55 chr1 109742116 109742258 -87453174 - ORR1D2-int LTR MaLR -166 1204 1071 2 1422 1513 227 26 54 chr1 109742262 109742649 -87452783 + ORR1C1 LTR MaLR 3 378 0 2 1422 1790 286 30 34 chr1 109742649 109743145 -87452287 - ORR1D2-int LTR MaLR -297 1073 580 2 1422 977 239 94 12 chr1 109743154 109743408 -87452024 - ORR1D2-int LTR MaLR -996 374 100 2 1422 991 297 50 4 chr1 109743437 109743697 -87451735 - ORR1D2 LTR MaLR -98 272 1 2 1422 951 18 0 0 chr1 109744784 109744897 -87450535 + (CA)n Simple_repeat Simple_repeat 1 113 0 2 1422 357 24 0 0 chr1 109745473 109745515 -87449917 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1422 294 292 65 40 chr1 109745966 109746166 -87449266 - L1ME2 LINE L1 -72 6092 5888 2 1422 666 0 0 0 chr1 109746298 109746372 -87449060 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 2 1422 189 121 0 0 chr1 109747709 109747742 -87447690 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2 1422 29 47 0 0 chr1 109748703 109748746 -87446686 + AT_rich Low_complexity Low_complexity 1 43 0 2 1422 1211 299 83 34 chr1 109749247 109749534 -87445898 - MER67D LTR ERV1 -5 509 198 2 1422 186 43 0 0 chr1 109749534 109749557 -87445875 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 1422 1211 299 83 34 chr1 109749557 109749716 -87445716 - MER67D LTR ERV1 -317 197 41 2 1422 603 337 93 9 chr1 109750953 109751285 -87444147 - MLT1A LTR MaLR -12 362 3 3 1422 180 0 0 0 chr1 109751503 109751523 -87443909 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1422 1211 239 44 19 chr1 109752138 109752500 -87442932 - ORR1D1 LTR MaLR 0 374 4 3 1422 4671 239 110 8 chr1 109752503 109753706 -87441726 - ORR1D1-int LTR MaLR -6 1364 63 3 1422 207 338 0 14 chr1 109753831 109753900 -87441532 - MER5B DNA MER1_type -110 68 1 3 1422 423 306 24 30 chr1 109754140 109754305 -87441127 + RMER5 LTR ERV1 112 275 -259 3 1422 748 361 118 13 chr1 109754714 109755171 -87440261 - LTR53 LTR ERVL 0 519 15 3 1422 272 237 28 49 chr1 109755228 109755370 -87440062 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 3 1422 256 60 0 57 chr1 109755991 109756044 -87439388 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 1422 249 284 125 0 chr1 109759708 109759796 -87435636 - Tigger7 DNA MER2_type -3 2488 2390 3 1422 968 301 81 109 chr1 109759812 109760123 -87435309 - Tigger7 DNA MER2_type -1976 515 224 3 1422 360 0 0 0 chr1 109760123 109760163 -87435269 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1422 968 301 81 109 chr1 109760163 109760381 -87435051 - Tigger7 DNA MER2_type -2268 223 1 3 1422 254 250 0 0 chr1 109761158 109761210 -87434222 + (TATG)n Simple_repeat Simple_repeat 3 54 0 3 1422 243 0 0 0 chr1 109761375 109761402 -87434030 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1422 4689 78 11 5 chr1 109761413 109762040 -87433392 - L1_Mus1 LINE L1 -1 6566 5936 3 1422 295 0 43 43 chr1 109762103 109762150 -87433282 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 1422 31 44 0 0 chr1 109762991 109763036 -87432396 + AT_rich Low_complexity Low_complexity 1 45 0 3 1422 7091 173 3 136 chr1 109763969 109765164 -87430268 + L1_Mus2 LINE L1 4329 5296 -581 3 1422 3046 59 3 5 chr1 109765164 109765555 -87429877 + L1_Mus1 LINE L1 6177 6566 -1 3 1422 7317 100 9 32 chr1 109765555 109766813 -87428619 + L1_Mus2 LINE L1 5297 6562 -4 3 1422 227 133 0 22 chr1 109766817 109766863 -87428569 + CT-rich Low_complexity Low_complexity 4 48 0 3 1422 217 269 0 15 chr1 109766885 109766953 -87428479 + (TTTA)n Simple_repeat Simple_repeat 1 67 0 3 1422 483 48 0 0 chr1 109767069 109767131 -87428301 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1422 1037 335 81 28 chr1 109767133 109767738 -87427694 - Lx8 LINE L1 -143 7330 6694 3 1422 243 0 0 0 chr1 109767799 109767826 -87427606 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1422 3214 48 5 0 chr1 109769263 109769657 -87425775 + MTA_Mm LTR MaLR 1 396 0 3 1422 8484 61 10 1 chr1 109769657 109770745 -87424687 + MTA_Mm-int LTR MaLR 1 1098 0 3 1422 3234 36 18 0 chr1 109770745 109771134 -87424298 + MTA_Mm LTR MaLR 1 396 0 3 1422 726 352 59 24 chr1 109771162 109771502 -87423930 - ORR1D2 LTR MaLR -2 368 17 3 1422 1118 75 7 0 chr1 109771510 109771656 -87423776 - B1_Mm SINE Alu 0 147 1 3 1422 23 0 0 0 chr1 109772580 109772603 -87422829 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 23 33 0 0 chr1 109772647 109772677 -87422755 + AT_rich Low_complexity Low_complexity 1 30 0 3 1422 194 347 85 40 chr1 109773166 109773343 -87422089 + L2 LINE L2 1932 2116 -1303 3 1422 212 0 0 35 chr1 109774973 109775002 -87420430 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 1422 2684 248 137 33 chr1 109775003 109775784 -87419648 - Lx6 LINE L1 -32 7428 6557 3 1422 1930 216 15 186 chr1 109775784 109776516 -87418916 - RMER19C LTR ERVK 0 611 5 3 1422 2684 248 137 33 chr1 109776516 109776559 -87418873 - Lx6 LINE L1 -904 6556 6518 3 1422 2337 235 40 43 chr1 109776559 109777183 -87418249 - Lx6 LINE L1 -1187 6273 5652 3 1422 2584 185 35 25 chr1 109777181 109777812 -87417620 - Lx6 LINE L1 -1028 4852 4216 3 1422 26087 20 0 168 chr1 109777904 109780598 -87414834 + L1Md_A LINE L1 7 2633 -3250 3 1422 7477 1 0 0 chr1 109780598 109781418 -87414014 - L1Md_A LINE L1 0 6582 5763 3 1422 26087 9 0 284 chr1 109781418 109786085 -87409347 + L1Md_A LINE L1 2634 5586 -297 3 1422 8879 13 0 0 chr1 109786085 109787080 -87408352 + L1Md_A LINE L1 5587 6581 -1 3 1422 320 118 0 0 chr1 109787201 109787252 -87408180 - Lx2B LINE L1 -594 6406 6356 3 1422 6484 159 65 5 chr1 109787251 109788781 -87406651 - Lx2B LINE L1 -934 6066 4462 3 1422 591 280 99 40 chr1 109789236 109789437 -87405995 - ID_B1 SINE B4 -8 216 4 3 1422 21 36 0 0 chr1 109789448 109789476 -87405956 + AT_rich Low_complexity Low_complexity 1 28 0 3 1422 2092 253 153 69 chr1 109789960 109791269 -87404163 + RMER1A Other Other 1 1016 -14 3 1422 427 102 11 11 chr1 109791270 109791359 -87404073 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 3 1422 319 316 14 42 chr1 109791731 109791873 -87403559 + MIRb SINE MIR 128 265 -3 3 1422 2434 142 20 69 chr1 109792047 109792499 -87402933 - RLTR23 LTR ERV1 0 430 1 3 1422 315 273 186 7 chr1 109793057 109793197 -87402235 + MLT1D LTR MaLR 333 497 -8 3 1422 228 67 0 0 chr1 109793286 109793316 -87402116 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1422 765 225 43 11 chr1 109793318 109793502 -87401930 - B2_Mm2 SINE B2 -4 191 2 3 1422 226 330 26 68 chr1 109793502 109793547 -87401885 + LTR48 LTR ERV1 115 154 -633 3 1422 692 141 0 8 chr1 109793548 109793670 -87401762 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 3 1422 192 149 0 0 chr1 109793671 109793718 -87401714 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 1422 279 0 0 0 chr1 109793752 109793783 -87401649 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1422 612 81 0 0 chr1 109793783 109793870 -87401562 - B1_Mus2 SINE Alu 0 147 61 3 1422 574 193 18 0 chr1 109793873 109793982 -87401450 - PB1D9 SINE Alu 0 120 10 3 1422 335 221 21 85 chr1 109793911 109794005 -87401427 - MT2B LTR ERVL -364 237 150 3 1422 187 261 75 75 chr1 109794076 109794196 -87401236 + MIRb SINE MIR 27 146 -122 3 1422 192 40 0 0 chr1 109794947 109794972 -87400460 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1422 679 284 38 9 chr1 109796539 109796749 -87398683 + B3 SINE B2 1 216 0 3 1422 692 240 137 30 chr1 109797579 109797850 -87397582 - Lx7 LINE L1 -505 7191 6892 3 1422 199 269 0 18 chr1 109797890 109798060 -87397372 + (CATA)n Simple_repeat Simple_repeat 4 170 0 3 1422 450 75 38 0 chr1 109798091 109798171 -87397261 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1422 2136 182 91 23 chr1 109803230 109803703 -87391729 - RLTR16 LTR ERVK 0 505 1 3 1422 372 43 0 0 chr1 109804800 109804846 -87390586 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1422 993 199 75 91 chr1 109805772 109806037 -87389395 - ORR1A4 LTR MaLR -66 263 3 3 1422 310 370 0 16 chr1 109806195 109806316 -87389116 - L1ME3A LINE L1 -91 6082 5964 3 1422 1190 191 51 44 chr1 109806407 109806703 -87388729 - Lx7 LINE L1 -702 6994 6697 3 1422 183 80 0 0 chr1 109807289 109807314 -87388118 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1422 373 318 53 136 chr1 109807378 109807753 -87387679 - L1M5 LINE L1 -2007 4139 3796 3 1422 275 134 30 0 chr1 109807905 109807972 -87387460 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 3 1422 248 398 34 11 chr1 109807976 109808065 -87387367 - MLT1J1 LTR MaLR -111 333 243 3 1422 461 202 27 18 chr1 109809366 109809477 -87385955 - Lx2B LINE L1 -611 6389 6278 3 1422 436 220 168 35 chr1 109809473 109809618 -87385814 - Lx3C LINE L1 -751 6225 6061 3 1422 194 0 0 37 chr1 109809618 109809645 -87385787 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 3 1422 436 220 168 35 chr1 109809645 109809725 -87385707 - Lx3C LINE L1 -916 6060 5970 3 1422 1534 246 78 19 chr1 109809723 109810207 -87385225 + Lx2B LINE L1 6169 6914 -86 3 1422 182 200 0 28 chr1 109812517 109812553 -87382879 - L4 LINE RTE -531 1498 1464 3 1422 886 122 0 11 chr1 109812679 109812861 -87382571 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1422 363 23 0 0 chr1 109812861 109812905 -87382527 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1422 1980 215 51 43 chr1 109813389 109814042 -87381390 - Lx9 LINE L1 -1657 5987 5298 3 1422 324 301 42 50 chr1 109814124 109814243 -87381189 + MTE2b LTR MaLR 200 335 -44 3 1422 465 115 0 0 chr1 109814958 109815045 -87380387 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1422 198 0 0 0 chr1 109815043 109815065 -87380367 + (TTCC)n Simple_repeat Simple_repeat 2 23 0 3 1422 284 318 27 45 chr1 109815387 109815499 -87379933 + MIRc SINE MIR 90 199 -69 3 1422 261 0 0 0 chr1 109816538 109816567 -87378865 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1422 36367 31 0 0 chr1 109816572 109823035 -87372397 - L1Md_T LINE L1 0 6585 50 3 1422 1863 222 24 7 chr1 109824754 109825166 -87370266 + MTD LTR MaLR 1 419 0 3 1422 555 234 45 20 chr1 109826896 109826934 -87368498 + Lx9 LINE L1 7430 7467 -177 3 1422 663 48 0 0 chr1 109826934 109827017 -87368415 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3 1422 555 234 45 20 chr1 109827017 109827179 -87368253 + Lx9 LINE L1 7468 7635 -9 3 1422 360 0 0 0 chr1 109827385 109827425 -87368007 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1422 550 216 114 92 chr1 109829143 109829260 -87366172 + L1_Mur2 LINE L1 888 988 -6724 3 1422 213 39 0 0 chr1 109829260 109829286 -87366146 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1422 730 145 177 17 chr1 109829286 109829484 -87365948 + L1_Mur2 LINE L1 929 1209 -6503 3 1422 4598 234 22 51 chr1 109829492 109830755 -87364677 + Lx5 LINE L1 5802 7029 -21 3 1422 252 0 0 0 chr1 109830755 109830783 -87364649 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 1422 4598 234 22 51 chr1 109830783 109830795 -87364637 + Lx5 LINE L1 7030 7040 -10 3 1422 337 321 78 35 chr1 109831397 109831513 -87363919 + B3A SINE B2 92 212 -4 3 1422 1632 261 36 90 chr1 109831537 109832003 -87363429 + Lx7 LINE L1 6518 6975 -721 3 1422 1248 48 6 0 chr1 109832003 109832168 -87363264 + L1_Mus1 LINE L1 6402 6567 0 3 1422 1632 247 287 51 chr1 109832168 109832534 -87362898 + Lx7 LINE L1 6976 7411 -285 3 1422 241 261 71 9 chr1 109832602 109832714 -87362718 + Lx7 LINE L1 7578 7696 0 3 1422 402 297 48 42 chr1 109834296 109834461 -87360971 - MTE2b LTR MaLR 0 379 214 3 1422 663 299 62 26 chr1 109834575 109834802 -87360630 - MTE2b LTR MaLR -144 235 1 3 1422 311 268 58 78 chr1 109834863 109835046 -87360386 - MTEa LTR MaLR -2 377 201 3 1422 1265 101 11 5 chr1 109835247 109835436 -87359996 - B2_Mm2 SINE B2 -5 190 1 3 1422 25 0 0 0 chr1 109835625 109835650 -87359782 + AT_rich Low_complexity Low_complexity 1 25 0 3 1422 276 53 0 0 chr1 109837128 109837166 -87358266 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1422 234 0 0 0 chr1 109837586 109837612 -87357820 + (CAA)n Simple_repeat Simple_repeat 1 26 0 3 1422 428 299 6 138 chr1 109837652 109837811 -87357621 + RSINE1 SINE B4 28 165 0 3 1422 549 191 0 0 chr1 109837832 109837942 -87357490 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 1423 728 265 177 17 chr1 109839581 109839880 -87355552 - RLTR28B LTR ERVL -134 347 1 3 1423 353 75 19 0 chr1 109839961 109840014 -87355418 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 3 1423 306 0 0 0 chr1 109840020 109840054 -87355378 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1423 213 39 0 0 chr1 109840054 109840079 -87355353 + (CG)n Simple_repeat Simple_repeat 2 27 0 4 1423 2233 243 25 29 chr1 109840900 109841455 -87353977 + Lx6 LINE L1 6907 7459 -1 4 1423 351 0 0 0 chr1 109841580 109841619 -87353813 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 1423 2879 335 52 21 chr1 109843079 109844669 -87350763 + RMER15-int LTR ERVL 224 1862 -3137 4 1423 282 87 0 0 chr1 109845360 109845406 -87350026 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1423 1031 274 64 44 chr1 109845423 109845832 -87349600 + RMER15-int LTR ERVL 4440 4856 -143 4 1423 989 181 119 13 chr1 109847558 109847746 -87347686 - Lx9 LINE L1 -2 7642 7433 4 1423 480 35 0 0 chr1 109847746 109847804 -87347628 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 1423 989 181 119 13 chr1 109847804 109847917 -87347515 - Lx9 LINE L1 -212 7432 7311 4 1423 233 75 0 24 chr1 109847918 109847959 -87347473 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1423 670 179 0 0 chr1 109847980 109848120 -87347312 + Lx9 LINE L1 7504 7643 -1 4 1423 1939 240 77 50 chr1 109848129 109849402 -87346030 + Lx5 LINE L1 286 1588 -4292 4 1423 2671 197 31 23 chr1 109850015 109850587 -87344845 + Lx5 LINE L1 6473 7049 -1 4 1423 2171 157 67 5 chr1 109850650 109851021 -87344411 + ORR1B1 LTR MaLR 1 394 0 4 1423 5554 189 14 36 chr1 109851021 109851490 -87343942 + Lx5 LINE L1 1584 2043 -3837 4 1423 459 35 0 0 chr1 109851490 109851547 -87343885 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1423 5554 189 14 36 chr1 109851547 109852124 -87343308 + Lx5 LINE L1 2044 2612 -3268 4 1423 3281 43 5 0 chr1 109852124 109852518 -87342914 - MTA_Mm LTR MaLR 0 396 1 4 1423 5554 189 14 36 chr1 109852518 109852801 -87342631 + Lx5 LINE L1 2613 2884 -2996 4 1423 985 167 45 5 chr1 109852821 109853022 -87342410 + L1_Mm LINE L1 5464 5657 -523 4 1423 6263 119 16 16 chr1 109853024 109854293 -87341139 + Lx LINE L1 5383 6650 -4 4 1423 5462 183 34 55 chr1 109854289 109854778 -87340654 + Lx5 LINE L1 3403 3855 -2025 4 1423 207 0 0 0 chr1 109854778 109854801 -87340631 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1423 5462 183 34 55 chr1 109854801 109855752 -87339680 + Lx5 LINE L1 3856 4813 -1067 4 1423 2139 198 2 110 chr1 109855748 109855963 -87339469 + Lx5 LINE L1 5180 5394 -486 4 1423 1040 84 0 0 chr1 109855963 109856094 -87339338 + B1_Mus1 SINE Alu 3 133 -15 4 1423 2139 198 2 110 chr1 109856094 109856450 -87338982 + Lx5 LINE L1 5395 5689 -191 4 1423 1629 161 91 91 chr1 109856450 109856812 -87338620 - ORR1B2 LTR MaLR 0 367 6 4 1423 6483 199 32 22 chr1 109856812 109858304 -87337128 - ORR1B2-int LTR MaLR -2 1507 1 4 1423 249 81 54 0 chr1 109858307 109858344 -87337088 - ORR1B2 LTR MaLR -7 377 339 4 1423 2356 259 20 33 chr1 109858441 109859077 -87336355 - Lx5 LINE L1 -22 7028 6401 4 1423 556 172 0 0 chr1 109859078 109859177 -87336255 + L1_Mur2 LINE L1 4887 4985 -892 4 1423 473 128 0 0 chr1 109859180 109859258 -87336174 + L1_Mur2 LINE L1 5286 5363 -514 4 1423 2452 179 93 2 chr1 109859261 109859710 -87335722 + RLTR17 LTR ERVK 203 692 0 4 1423 1618 200 38 5 chr1 109860079 109860513 -87334919 + RLTR31_Mm LTR ERVK 1 436 -5 4 1423 7115 114 52 8 chr1 109860539 109862508 -87332924 - L1_Mus3 LINE L1 -1 6637 4567 4 1423 531 243 225 39 chr1 109862512 109862830 -87332602 + Lx5 LINE L1 5951 6327 -723 4 1423 1486 209 65 3 chr1 109862833 109863141 -87332291 - ORR1B2 LTR MaLR -40 327 1 4 1423 4754 217 95 74 chr1 109863141 109863383 -87332049 + Lx6 LINE L1 5688 5928 -1532 4 1423 213 39 0 0 chr1 109863383 109863409 -87332023 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1423 189 0 0 0 chr1 109863418 109863439 -87331993 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1423 4754 217 95 74 chr1 109863439 109864007 -87331425 + Lx6 LINE L1 5937 6464 -996 4 1423 3253 29 29 0 chr1 109864007 109864392 -87331040 + MTA_Mm LTR MaLR 1 396 0 4 1423 4754 217 95 74 chr1 109864392 109865102 -87330330 + Lx6 LINE L1 6465 7249 -211 4 1423 25 0 0 0 chr1 109865161 109865186 -87330246 + AT_rich Low_complexity Low_complexity 1 25 0 4 1423 289 360 43 17 chr1 109865206 109865322 -87330110 - PB1D9 SINE Alu -1 119 1 4 1423 40 37 0 0 chr1 109865398 109865452 -87329980 + AT_rich Low_complexity Low_complexity 1 54 0 4 1423 240 143 0 0 chr1 109865526 109865582 -87329850 + (A)n Simple_repeat Simple_repeat 1 56 0 4 1423 3083 129 40 24 chr1 109866170 109866743 -87328689 - RMER17D2 LTR ERVK -227 582 1 4 1423 430 194 50 20 chr1 109866743 109866839 -87328593 + B1_Mur4 SINE Alu 51 149 -1 4 1423 249 139 0 0 chr1 109868079 109868122 -87327310 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1423 794 200 19 0 chr1 109868334 109868494 -87326938 - URR1A DNA MER1_type -2 224 62 4 1423 319 296 64 60 chr1 109868847 109869128 -87326304 + RLTR15 LTR ERVK 58 339 -20 4 1423 1196 163 0 5 chr1 109869291 109869479 -87325953 - URR1B DNA MER1_type 0 225 39 4 1423 2643 190 10 63 chr1 109869479 109869859 -87325573 - RLTR31_Mur LTR ERVK 0 553 206 4 1423 5466 38 0 3 chr1 109869859 109870515 -87324917 - L1Md_T LINE L1 0 6582 5929 4 1423 2643 190 10 63 chr1 109870515 109870718 -87324714 - RLTR31_Mur LTR ERVK -348 205 1 4 1423 291 136 0 0 chr1 109871075 109871134 -87324298 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1423 1855 173 16 46 chr1 109871430 109871718 -87323714 + RLTR15 LTR ERVK 1 281 -78 4 1423 3057 47 3 3 chr1 109871718 109872103 -87323329 - L1Md_F3 LINE L1 -2 6582 6198 4 1423 1855 173 16 46 chr1 109872103 109872184 -87323248 + RLTR15 LTR ERVK 282 359 0 4 1423 192 279 87 87 chr1 109872243 109872392 -87323040 + L2b LINE L2 3226 3374 -1 4 1423 559 288 25 25 chr1 109874101 109874261 -87321171 + RLTR42 LTR ERVK 55 214 -25 4 1423 240 200 0 0 chr1 109874692 109874742 -87320690 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 4 1423 405 58 0 0 chr1 109875301 109875353 -87320079 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1423 491 281 115 36 chr1 109876556 109876772 -87318660 + MTEb LTR MaLR 52 279 -100 4 1423 251 254 68 26 chr1 109877112 109877229 -87318203 + Lx9 LINE L1 7520 7641 -3 4 1423 1734 207 59 12 chr1 109877544 109877950 -87317482 - Lx5 LINE L1 -5 7045 6621 4 1423 478 264 112 0 chr1 109878209 109878334 -87317098 - MTE2a LTR MaLR 0 379 241 4 1423 283 333 66 26 chr1 109878359 109878510 -87316922 - MTE2a LTR MaLR -254 165 9 4 1423 314 256 54 0 chr1 109878623 109878752 -87316680 - L1M4 LINE L1 -1946 4200 4065 4 1423 561 308 109 10 chr1 109878931 109879452 -87315980 - L1M4 LINE L1 -2287 3859 3287 4 1423 830 268 81 38 chr1 109880129 109880501 -87314931 - L1MA7 LINE L1 -12 6279 5892 4 1423 25 0 0 0 chr1 109880696 109880721 -87314711 + AT_rich Low_complexity Low_complexity 1 25 0 4 1423 3384 76 2 0 chr1 109881140 109881727 -87313705 - L1_Mus2 LINE L1 -514 6052 5465 4 1423 3723 95 4 4 chr1 109881727 109882245 -87313187 + L1_Mus2 LINE L1 6049 6566 0 4 1423 21 0 0 0 chr1 109882252 109882273 -87313159 + AT_rich Low_complexity Low_complexity 1 21 0 4 1423 320 390 32 11 chr1 109884052 109884241 -87311191 - MIRb SINE MIR -4 264 72 4 1423 292 294 55 31 chr1 109884709 109884939 -87310493 - MLT1H2 LTR MaLR 0 569 328 4 1423 291 85 0 0 chr1 109885009 109885056 -87310376 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1423 449 212 11 45 chr1 109885286 109885375 -87310057 + PB1D9 SINE Alu 12 97 -23 4 1423 264 418 43 0 chr1 109885761 109885902 -87309530 - B1_Mur2 SINE Alu -1 148 2 4 1423 231 191 0 0 chr1 109886226 109886268 -87309164 - RSINE1 SINE B4 -123 42 1 4 1423 1761 69 0 25 chr1 109886396 109886635 -87308797 + L1_Mus2 LINE L1 6330 6562 -4 4 1423 7610 217 57 19 chr1 109886645 109888868 -87306564 - Lx7 LINE L1 -3 7693 5386 4 1423 225 208 0 20 chr1 109888868 109888917 -87306515 + MTC LTR MaLR 3 50 -371 4 1423 1425 138 41 154 chr1 109888936 109889398 -87306034 + RMER17C LTR ERVK 1 410 0 4 1423 2008 196 17 29 chr1 109889895 109890309 -87305123 + MTC LTR MaLR 13 421 0 4 1423 727 123 24 94 chr1 109890310 109890480 -87304952 - Lx7 LINE L1 -507 5373 5216 4 1423 2539 186 3 99 chr1 109890480 109891108 -87304324 - Lx7 LINE L1 -854 5026 4459 4 1423 614 225 74 107 chr1 109891194 109891503 -87303929 - RLTR12B LTR ERVK -42 486 188 4 1423 350 159 14 0 chr1 109891529 109891598 -87303834 - RLTR12B LTR ERVK -458 70 1 4 1423 4801 179 87 10 chr1 109891598 109892522 -87302910 - Lx7 LINE L1 -1445 4435 3443 4 1423 3460 15 2 2 chr1 109892522 109892918 -87302514 + MTA_Mm LTR MaLR 1 396 0 4 1423 4801 179 87 10 chr1 109892918 109893089 -87302343 - Lx7 LINE L1 -2438 3442 3256 4 1423 1716 279 64 18 chr1 109893085 109893860 -87301572 - Lx7 LINE L1 -1603 6093 5285 4 1423 17741 69 6 5 chr1 109893882 109896912 -87298520 - L1Md_F2 LINE L1 -13 6569 3535 4 1423 6497 72 16 3 chr1 109896906 109898330 -87297102 - L1Md_F2 LINE L1 -4086 1797 355 4 1423 1065 181 75 29 chr1 109898333 109898611 -87296821 - Lx7 LINE L1 -588 5292 5002 4 1423 27 0 0 0 chr1 109898611 109898638 -87296794 + AT_rich Low_complexity Low_complexity 1 27 0 4 1423 1168 55 0 20 chr1 109899638 109899787 -87295645 - B1_Mus2 SINE Alu 0 147 2 4 1423 705 24 0 0 chr1 109899949 109900032 -87295400 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1423 575 363 46 48 chr1 109901125 109901562 -87293870 + L2 LINE L2 2418 2853 -566 4 1423 235 298 0 50 chr1 109902397 109902421 -87293011 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1423 381 43 0 0 chr1 109902421 109902468 -87292964 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1423 235 298 0 50 chr1 109902468 109902506 -87292926 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1423 399 21 0 0 chr1 109902506 109902554 -87292878 + (TATG)n Simple_repeat Simple_repeat 2 49 0 4 1423 267 79 0 0 chr1 109902554 109902591 -87292841 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 4 1423 235 298 0 50 chr1 109902591 109902625 -87292807 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 1423 2872 114 79 37 chr1 109902731 109903240 -87292192 - RMER16 LTR ERVK 0 533 4 4 1423 259 372 26 17 chr1 109903491 109903606 -87291826 - LTR82B Low_complexity ERVL -51 779 664 4 1423 330 26 0 0 chr1 109905383 109905422 -87290010 + (TCC)n Simple_repeat Simple_repeat 2 40 0 4 1423 3901 133 3 8 chr1 109905430 109906023 -87289409 - Lx2 LINE L1 0 6997 6408 4 1423 425 282 90 0 chr1 109908434 109908590 -87286842 - HAL1-2a_MD LINE L1 -510 2514 2345 4 1423 631 266 129 29 chr1 109909867 109909929 -87285503 - L1M3 LINE L1 -960 5180 5118 4 1423 216 0 0 0 chr1 109909929 109909953 -87285479 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1423 631 266 129 29 chr1 109909953 109910157 -87285275 - L1M3 LINE L1 -1023 5117 4885 4 1423 216 0 0 0 chr1 109910157 109910181 -87285251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1423 631 266 129 29 chr1 109910181 109910362 -87285070 - L1M3 LINE L1 -1256 4884 4689 4 1423 331 216 62 31 chr1 109910384 109910513 -87284919 + L1MB1 LINE L1 5173 5305 -835 4 1423 743 311 96 25 chr1 109910730 109911249 -87284183 + L1MB1 LINE L1 5493 6052 -116 4 1423 7632 93 11 6 chr1 109911341 109912763 -87282669 - L1_Mus3 LINE L1 -2 6636 5207 4 1423 10951 138 60 14 chr1 109912763 109915567 -87279865 - L1VL2 LINE L1 -655 2960 32 4 1423 21 0 0 0 chr1 109915621 109915642 -87279790 + AT_rich Low_complexity Low_complexity 1 21 0 4 1423 261 262 47 0 chr1 109915720 109915827 -87279605 - LTR37A LTR ERV1 -3 423 312 4 1423 287 293 208 26 chr1 109915828 109916059 -87279373 + B4A SINE B4 2 274 -18 4 1423 441 0 0 0 chr1 109916085 109916134 -87279298 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1423 534 16 0 0 chr1 109916135 109916198 -87279234 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1423 216 0 0 0 chr1 109916948 109916972 -87278460 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1423 404 37 19 0 chr1 109916972 109917026 -87278406 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1423 1332 306 91 20 chr1 109918286 109918845 -87276587 + Lx7 LINE L1 6711 7309 -387 5 1423 4507 132 49 6 chr1 109918854 109919630 -87275802 - RMER17D2 LTR ERVK 0 809 1 5 1423 34 0 0 0 chr1 109919831 109919865 -87275567 + AT_rich Low_complexity Low_complexity 1 34 0 5 1423 576 245 46 39 chr1 109919865 109920018 -87275414 - RSINE1 SINE B4 0 165 12 5 1423 539 196 72 7 chr1 109920337 109920352 -87275080 - B1_Mur2 SINE Alu 0 149 135 5 1423 222 37 0 0 chr1 109920352 109920379 -87275053 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1423 570 191 12 8 chr1 109920379 109920502 -87274930 - B1_Mus2 SINE Alu -15 134 2 5 1423 710 314 41 15 chr1 109920537 109920805 -87274627 - Lx8 LINE L1 -353 7120 6846 5 1423 22 56 0 0 chr1 109921073 109921109 -87274323 + AT_rich Low_complexity Low_complexity 1 36 0 5 1423 962 146 6 0 chr1 109921577 109921748 -87273684 + CT-rich Low_complexity Low_complexity 3 174 0 5 1423 472 351 82 41 chr1 109922026 109922296 -87273136 + MLT1A0 LTR MaLR 58 338 -27 5 1423 3025 25 3 0 chr1 109922500 109922860 -87272572 - L1Md_F3 LINE L1 -4 6580 6220 5 1423 435 118 0 0 chr1 109922958 109923034 -87272398 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1423 565 313 11 0 chr1 109924560 109924739 -87270693 + B3A SINE B2 3 183 -15 5 1423 348 24 0 0 chr1 109924743 109924784 -87270648 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1423 426 39 0 0 chr1 109924788 109924840 -87270592 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 5 1423 832 211 9 178 chr1 109924990 109925215 -87270217 + ORR1D1 LTR MaLR 1 187 -187 5 1423 772 219 35 17 chr1 109925568 109925776 -87269656 - ORR1D1 LTR MaLR -1 373 123 5 1423 603 205 26 9 chr1 109925861 109925974 -87269458 + B3A SINE B2 11 125 -73 5 1423 463 322 122 6 chr1 109927243 109927580 -87267852 - L1MC1 LINE L1 -285 6223 5848 5 1423 315 236 45 45 chr1 109927761 109927872 -87267560 - L1MC1 LINE L1 -1676 4645 4535 5 1423 876 300 67 9 chr1 109927964 109928310 -87267122 + ORR1D2 LTR MaLR 2 367 -3 5 1423 225 284 8 135 chr1 109928703 109928829 -87266603 - L1MC1 LINE L1 -1834 4487 4378 5 1423 1122 192 64 57 chr1 109928824 109928869 -87266563 + Lx7 LINE L1 4267 4326 -1554 5 1423 1585 197 48 46 chr1 109928869 109929242 -87266190 - ORR1C1 LTR MaLR 0 378 5 5 1423 1122 192 64 57 chr1 109929242 109929321 -87266111 + Lx7 LINE L1 4327 4410 -1470 5 1423 315 0 0 0 chr1 109929321 109929356 -87266076 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1423 1122 192 64 57 chr1 109929356 109929544 -87265888 + Lx7 LINE L1 4411 4581 -1299 5 1423 963 217 44 0 chr1 109929544 109929724 -87265708 - ORR1C2 LTR MaLR 0 384 197 5 1423 891 122 0 0 chr1 109929724 109929896 -87265536 + (GA)n Simple_repeat Simple_repeat 2 173 0 5 1423 521 200 0 29 chr1 109929896 109929986 -87265446 - ORR1C2 LTR MaLR -295 89 2 5 1423 4542 221 57 23 chr1 109930161 109931400 -87264032 + Lx7 LINE L1 4624 5909 -1787 5 1423 1464 241 77 41 chr1 109931405 109931898 -87263534 + Lx7 LINE L1 7006 7516 -180 5 1423 250 256 35 0 chr1 109931935 109932021 -87263411 + Lx7 LINE L1 7607 7695 -1 5 1423 300 331 87 33 chr1 109932184 109932484 -87262948 - L1MC1 LINE L1 -6188 320 5 5 1423 799 149 0 13 chr1 109932658 109932814 -87262618 + CT-rich Low_complexity Low_complexity 1 154 0 5 1423 321 318 0 35 chr1 109933284 109933398 -87262034 - PB1D7 SINE Alu -1 119 7 5 1423 219 323 55 24 chr1 109935060 109935187 -87260245 + MIRb SINE MIR 112 242 -26 5 1423 3049 11 43 0 chr1 109935379 109935731 -87259701 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1423 10359 25 2 5 chr1 109935731 109936927 -87258505 - IAPEz-int LTR ERVK 0 6481 5290 5 1423 1484 21 137 0 chr1 109936925 109937115 -87258317 - IAPEz-int LTR ERVK -6258 223 8 5 1423 3049 11 43 0 chr1 109937115 109937467 -87257965 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1423 441 0 0 0 chr1 109937473 109937522 -87257910 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1423 357 24 0 0 chr1 109937784 109937826 -87257606 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1423 297 0 0 0 chr1 109937826 109937858 -87257574 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1423 22 35 0 0 chr1 109939293 109939322 -87256110 + AT_rich Low_complexity Low_complexity 1 29 0 5 1423 228 284 245 27 chr1 109940171 109940359 -87255073 - MLT1C LTR MaLR -221 246 18 5 1423 2166 155 68 119 chr1 109941260 109941730 -87253702 - RLTR41 LTR ERV1 0 446 1 5 1423 246 62 0 0 chr1 109942142 109942174 -87253258 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 5 1423 1208 35 0 0 chr1 109942174 109942319 -87253113 - B1_Mus2 SINE Alu -2 145 1 5 1423 373 350 88 50 chr1 109942859 109943223 -87252209 + LTR16C LTR ERVL 61 438 -51 5 1423 776 285 153 58 chr1 109944739 109945085 -87250347 + MTEa LTR MaLR 1 379 0 5 1423 21 0 0 0 chr1 109946650 109946671 -87248761 + AT_rich Low_complexity Low_complexity 1 21 0 5 1423 276 235 12 0 chr1 109948293 109948378 -87247054 - L1MA7 LINE L1 -2 6289 6204 5 1423 27 49 0 0 chr1 109948445 109948486 -87246946 + AT_rich Low_complexity Low_complexity 1 41 0 5 1423 398 351 29 33 chr1 109948488 109948762 -87246670 + B4A SINE B4 2 274 -18 5 1423 1867 224 14 0 chr1 109948766 109949137 -87246295 - RLTR14 LTR ERV1 0 382 7 5 1423 188 163 23 0 chr1 109949422 109949465 -87245967 + CT-rich Low_complexity Low_complexity 2 45 0 5 1423 636 60 0 0 chr1 109949638 109949722 -87245710 + L1Md_F2 LINE L1 4788 4871 -1012 5 1423 2600 38 0 3 chr1 109949722 109950040 -87245392 - L1Md_F2 LINE L1 -3 6579 6263 5 1423 7162 70 1 12 chr1 109950040 109950985 -87244447 + L1Md_F2 LINE L1 5636 6570 -12 5 1423 1165 300 21 45 chr1 109950986 109951408 -87244024 - RLTR14-int LTR ERV1 -4904 413 2 5 1423 2066 178 14 3 chr1 109951409 109951780 -87243652 - RLTR14 LTR ERV1 0 382 8 5 1423 303 19 93 0 chr1 109952455 109952509 -87242923 + (CAAAA)n Simple_repeat Simple_repeat 1 59 0 5 1423 228 309 61 0 chr1 109952529 109952694 -87242738 - L1M2 LINE L1 -383 5929 5755 5 1423 258 81 0 0 chr1 109952899 109952936 -87242496 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1423 273 57 0 0 chr1 109953314 109953349 -87242083 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 1423 357 131 0 0 chr1 109953443 109953504 -87241928 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1423 26 30 0 0 chr1 109953861 109953894 -87241538 + AT_rich Low_complexity Low_complexity 1 33 0 5 1423 1714 16 0 0 chr1 109954341 109954534 -87240898 + B2_Mm1a SINE B2 1 193 0 5 1423 339 78 0 0 chr1 109954958 109955009 -87240423 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1423 729 239 5 94 chr1 109955422 109955625 -87239807 + ORR1C2 LTR MaLR 7 191 -193 5 1423 1006 214 184 0 chr1 109955634 109955900 -87239532 - Lx6 LINE L1 -73 5804 5490 5 1423 1406 279 72 11 chr1 109955900 109956554 -87238878 + Lx6 LINE L1 5794 6729 -731 5 1423 961 106 6 18 chr1 109956563 109956726 -87238706 + (GGAGAA)n Simple_repeat Simple_repeat 4 164 0 5 1423 1490 17 6 0 chr1 109956726 109956903 -87238529 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1423 1653 273 53 18 chr1 109956903 109957490 -87237942 + Lx6 LINE L1 6450 7434 -26 5 1423 4881 57 1 1 chr1 109957514 109958334 -87237098 + L1Md_F2 LINE L1 5267 6086 -496 5 1423 483 245 165 19 chr1 109958337 109958495 -87236937 + ORR1C2 LTR MaLR 196 376 -2 5 1423 26 64 0 0 chr1 109959475 109959522 -87235910 + AT_rich Low_complexity Low_complexity 1 47 0 5 1423 3922 74 0 0 chr1 109959903 109960414 -87235018 - L1Md_T LINE L1 0 6582 6072 5 1423 4026 32 0 4 chr1 109961288 109961763 -87233669 + L1Md_F2 LINE L1 6091 6563 -19 5 1423 238 0 53 26 chr1 109961768 109961806 -87233626 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1423 2405 232 30 8 chr1 109961846 109962376 -87233056 + Lx5 LINE L1 6509 7050 0 5 1423 406 56 55 22 chr1 109962600 109962691 -87232741 + (CAAAA)n Simple_repeat Simple_repeat 2 95 0 5 1423 260 362 72 72 chr1 109962834 109963197 -87232235 - MLT1B LTR MaLR -25 365 3 5 1423 3872 73 2 0 chr1 109963307 109963811 -87231621 - L1_Mus1 LINE L1 0 6567 6063 5 1423 568 205 316 0 chr1 109966275 109966446 -87228986 - URR1A DNA MER1_type -1 225 1 5 1423 250 361 49 70 chr1 109966613 109966756 -87228676 - Zaphod DNA Tip100 -1 4030 3891 5 1423 195 189 0 0 chr1 109966787 109966840 -87228592 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 5 1423 294 50 0 0 chr1 109966844 109966884 -87228548 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1423 2709 181 57 19 chr1 109967126 109967705 -87227727 - L1_Mur2 LINE L1 -625 5252 4652 5 1423 2886 141 2 2 chr1 109967699 109968154 -87227278 + Lx LINE L1 5254 5708 -175 5 1423 327 0 0 0 chr1 109968172 109968218 -87227214 - L1Md_T LINE L1 0 6582 6537 5 177 8120 44 5 0 chr1 109968218 109969590 -87225842 - L1Md_F2 LINE L1 -1 6581 5203 5 1424 5514 120 19 6 chr1 109969590 109970435 -87224997 + Lx LINE L1 5792 6647 -7 5 1424 470 356 90 16 chr1 109970725 109971104 -87224328 - Lx7 LINE L1 -527 7169 6763 5 1424 236 319 0 0 chr1 109971173 109971242 -87224190 - Lx9 LINE L1 -1934 5710 5642 5 1424 1297 287 29 42 chr1 109971242 109971791 -87223641 + L1_Mur3 LINE L1 4631 5172 -708 5 1424 724 107 232 32 chr1 109972040 109972195 -87223237 + B2_Mm2 SINE B2 2 187 -8 5 1424 25 0 0 0 chr1 109972436 109972461 -87222971 + AT_rich Low_complexity Low_complexity 1 25 0 5 1424 1859 154 28 0 chr1 109972729 109973047 -87222385 - ORR1A2 LTR MaLR 0 327 1 5 1424 1850 274 63 104 chr1 109973806 109973931 -87221501 + L1_Rod LINE L1 4383 4515 -1332 5 1424 180 0 0 0 chr1 109973931 109973951 -87221481 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1424 1850 274 63 104 chr1 109973951 109974176 -87221256 + L1_Rod LINE L1 4516 4742 -1105 5 1424 207 0 0 0 chr1 109974176 109974199 -87221233 + (AAATG)n Simple_repeat Simple_repeat 3 25 0 5 1424 1850 274 63 104 chr1 109974199 109974584 -87220848 + L1_Rod LINE L1 4743 5154 -693 5 1424 225 50 82 16 chr1 109974584 109974645 -87220787 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1424 1850 274 63 104 chr1 109974645 109975026 -87220406 + L1_Rod LINE L1 5155 5454 -393 5 1424 261 254 25 0 chr1 109975026 109975038 -87220394 + ORR1B1-int LTR MaLR 634 648 -861 5 1424 899 73 8 0 chr1 109975038 109975162 -87220270 + B1_Mm SINE Alu 2 126 -21 5 1424 594 257 11 39 chr1 109975171 109975353 -87220079 + L1_Rod LINE L1 5455 5631 -216 5 1424 560 215 48 20 chr1 109975362 109975463 -87219969 + L1_Rod LINE L1 2479 2579 -3268 5 1424 408 20 0 0 chr1 109975463 109975512 -87219920 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1424 560 215 48 20 chr1 109975512 109975557 -87219875 + L1_Rod LINE L1 2580 2628 -3219 5 1424 5886 60 0 7 chr1 109975593 109976345 -87219087 + L1Md_F2 LINE L1 5833 6579 -3 5 1424 4373 73 2 18 chr1 109976354 109976963 -87218469 + L1Md_F2 LINE L1 5981 6579 -3 5 1424 322 284 0 56 chr1 109978102 109978210 -87217222 + MLT1A0 LTR MaLR 263 364 -1 5 1424 325 130 53 84 chr1 109978287 109978377 -87217055 + MTC LTR MaLR 301 400 -21 5 1424 1395 22 0 16 chr1 109979273 109979455 -87215977 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 1424 654 329 68 39 chr1 109981361 109981595 -87213837 - B4A SINE B4 -8 284 44 5 1424 501 354 119 0 chr1 109981817 109982128 -87213304 - MLT1A LTR MaLR -8 366 19 5 1424 696 45 0 0 chr1 109982194 109982282 -87213150 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1424 1261 144 18 9 chr1 109982491 109982715 -87212717 - Lx2A LINE L1 -2 7006 6781 5 1424 1068 192 5 5 chr1 109982715 109982924 -87212508 - L1_Mur2 LINE L1 -601 5276 5068 5 1424 6110 162 14 28 chr1 109982927 109984131 -87211301 + L1_Mur2 LINE L1 3888 5074 -812 5 1424 1916 72 4 4 chr1 109986351 109986615 -87208817 + L1_Mus2 LINE L1 6303 6566 0 6 1424 28 0 0 0 chr1 109986666 109986694 -87208738 + AT_rich Low_complexity Low_complexity 1 28 0 6 1424 837 244 88 152 chr1 109986961 109987348 -87208084 + ORR1C2 LTR MaLR 9 370 -14 6 1424 1214 33 0 7 chr1 109987548 109987700 -87207732 + (TTTTC)n Simple_repeat Simple_repeat 5 155 0 6 1424 3073 133 30 4 chr1 109987706 109988179 -87207253 - Lx3A LINE L1 -6 6975 6493 6 1424 218 32 0 31 chr1 109988179 109988211 -87207221 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 1424 3073 133 30 4 chr1 109988211 109988229 -87207203 - Lx3A LINE L1 -489 6492 6473 6 1424 16630 115 23 23 chr1 109988232 109988326 -87207106 - L1_Mur1 LINE L1 -1475 4411 4319 6 1424 1422 54 14 33 chr1 109988326 109988538 -87206894 + L1Md_F3 LINE L1 6376 6583 -1 6 1424 16630 115 23 23 chr1 109988538 109989754 -87205678 - L1_Mur1 LINE L1 -1568 4318 3145 6 1424 186 103 0 0 chr1 109989754 109989783 -87205649 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1424 16630 115 23 23 chr1 109989783 109991274 -87204158 - L1_Mur1 LINE L1 -2742 3144 1610 6 1424 1244 206 69 99 chr1 109991274 109991679 -87203753 + RLTR9C LTR ERVK 1 393 0 6 1424 5379 138 75 6 chr1 109991679 109992974 -87202458 - L1_Mur1 LINE L1 -4271 1615 216 6 1424 273 29 0 0 chr1 109992999 109993033 -87202399 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 6 1424 753 12 0 0 chr1 109993089 109993175 -87202257 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 6 1424 209 179 45 0 chr1 109993279 109993346 -87202086 + A-rich Low_complexity Low_complexity 3 72 0 6 1424 1045 314 90 38 chr1 109993348 109994045 -87201387 - Lx7 LINE L1 -376 7320 6546 6 1424 266 117 33 0 chr1 109994613 109994673 -87200759 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 6 1424 6002 61 16 1 chr1 109995491 109996259 -87199173 - L1Md_F2 LINE L1 0 6582 5804 6 1424 411 56 0 0 chr1 109996456 109996510 -87198922 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1424 846 135 0 0 chr1 109996537 109996715 -87198717 + (TC)n Simple_repeat Simple_repeat 1 178 0 6 1424 387 0 0 0 chr1 109996715 109996758 -87198674 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1424 444 104 0 0 chr1 109997546 109997613 -87197819 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1424 4071 81 2 9 chr1 110001099 110001659 -87193773 - L1Md_F2 LINE L1 -9 6573 6018 1 1424 22045 76 1 1 chr1 110001659 110004770 -87190662 + L1Md_F2 LINE L1 2909 6020 -562 1 1424 215 105 53 0 chr1 110005202 110005240 -87190192 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 1424 305 333 52 17 chr1 110005245 110005361 -87190071 - ID_B1 SINE B4 -24 200 81 3 1424 21 57 0 0 chr1 110005388 110005423 -87190009 + AT_rich Low_complexity Low_complexity 1 35 0 4 1424 980 228 32 130 chr1 110005530 110005611 -87189821 - Lx9 LINE L1 0 7644 7562 5 1424 1651 31 0 0 chr1 110005611 110005803 -87189629 - B2_Mm1t SINE B2 0 193 2 6 1424 980 228 32 130 chr1 110005803 110006159 -87189273 - Lx9 LINE L1 -83 7561 7250 5 1424 23 54 0 0 chr1 110006431 110006468 -87188964 + AT_rich Low_complexity Low_complexity 1 37 0 7 1424 962 262 111 22 chr1 110006473 110006844 -87188588 + MTD LTR MaLR 14 417 -2 8 1424 3804 32 19 4 chr1 110007054 110007527 -87187905 + L1Md_F2 LINE L1 6103 6582 0 9 1424 2750 269 101 22 chr1 110008889 110009808 -87185624 + L1_Mur3 LINE L1 42 1033 -6679 1 1424 1559 176 27 158 chr1 110009862 110010267 -87185165 + ORR1B1 LTR MaLR 41 392 -2 1 1424 4803 189 46 15 chr1 110010269 110011546 -87183886 + ORR1B1-int LTR MaLR 1 1772 -191 1 1424 340 276 16 8 chr1 110012027 110012151 -87183281 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 1 1424 1237 226 39 0 chr1 110012181 110012460 -87182972 + Lx9 LINE L1 6681 6970 -674 1 1424 765 90 0 0 chr1 110012518 110012629 -87182803 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 1424 27 0 0 0 chr1 110013270 110013297 -87182135 + AT_rich Low_complexity Low_complexity 1 27 0 1 1424 1290 270 47 36 chr1 110013345 110013814 -87181618 - Lx9 LINE L1 -203 7441 6968 1 1424 1624 117 0 0 chr1 110013811 110014041 -87181391 + L1_Mm LINE L1 5342 5571 -312 1 1424 321 312 90 10 chr1 110014042 110014243 -87181189 - L1_Rod LINE L1 -3187 2660 2444 1 1424 243 0 0 0 chr1 110014243 110014270 -87181162 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1424 347 278 65 0 chr1 110014303 110014411 -87181021 + ORR1D1 LTR MaLR 78 192 -182 2 1424 313 258 164 31 chr1 110014407 110014535 -87180897 + ORR1D1-int LTR MaLR 300 444 -926 2 1424 4904 173 0 86 chr1 110014703 110015764 -87179668 - L1_Mm LINE L1 -311 5572 4603 2 1424 7243 108 21 0 chr1 110015787 110016828 -87178604 + Lx LINE L1 5587 6649 -5 2 1424 182 128 0 25 chr1 110016945 110016985 -87178447 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1424 251 306 14 27 chr1 110017934 110018008 -87177424 - ID4_ SINE ID -5 78 6 2 1424 1063 115 0 7 chr1 110018684 110018822 -87176610 + B1_Mus1 SINE Alu 1 138 -10 2 1424 315 0 0 0 chr1 110018822 110018857 -87176575 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1424 5030 103 55 5 chr1 110019855 110021225 -87174207 + L1VL4 LINE L1 233 1679 -1880 2 1424 8589 144 54 5 chr1 110021220 110023555 -87171877 + L1_Mus2 LINE L1 4111 6566 0 2 1424 4672 178 11 5 chr1 110023567 110024421 -87171011 + Lx LINE L1 5783 6641 -13 2 1424 844 9 19 0 chr1 110024421 110024526 -87170906 + (GAA)n Simple_repeat Simple_repeat 2 108 0 3 1424 273 305 63 25 chr1 110024580 110024738 -87170694 + L1M4 LINE L1 5456 5619 -565 3 1424 1660 273 43 11 chr1 110026596 110027040 -87168392 - Lx6 LINE L1 -26 7434 6977 3 1424 614 330 20 10 chr1 110027198 110027397 -87168035 + MTD LTR MaLR 12 212 -207 3 1424 299 150 17 0 chr1 110027399 110027459 -87167973 + GA-rich Low_complexity Low_complexity 1 61 0 3 1424 1579 251 68 16 chr1 110027750 110028135 -87167297 + MTD LTR MaLR 15 419 0 3 1424 301 58 19 19 chr1 110028160 110028213 -87167219 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 3 1424 316 289 11 0 chr1 110028701 110028791 -87166641 + ORR1D2-int LTR MaLR 1277 1367 -3 3 1424 766 289 86 37 chr1 110028796 110029145 -87166287 + ORR1D2 LTR MaLR 3 368 -2 3 1424 3056 212 85 81 chr1 110029415 110030271 -87165161 - RMER13A LTR ERVK 0 860 1 3 1424 183 100 0 0 chr1 110030537 110030567 -87164865 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1424 284 300 55 55 chr1 110030860 110030987 -87164445 - MLT1J LTR MaLR -157 355 229 4 1424 22 0 0 0 chr1 110031089 110031111 -87164321 + AT_rich Low_complexity Low_complexity 1 22 0 4 1424 432 0 0 0 chr1 110031531 110031579 -87163853 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1424 207 0 0 0 chr1 110031579 110031601 -87163831 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1424 392 329 6 108 chr1 110031779 110031936 -87163496 + RSINE1 SINE B4 25 165 0 4 1424 2113 160 72 23 chr1 110031975 110032417 -87163015 - RLTR45 LTR ERVK 0 482 19 4 1424 374 261 68 34 chr1 110032387 110032534 -87162898 - Tigger5 DNA MER2_type -128 2278 2127 4 1424 449 317 93 22 chr1 110032582 110032808 -87162624 + L1M4 LINE L1 2899 3140 -3006 4 1424 693 260 15 30 chr1 110033104 110033302 -87162130 + URR1B DNA MER1_type 2 196 -29 4 1424 2524 88 65 3 chr1 110033772 110034159 -87161273 + IAPLTR2a LTR ERVK 1 411 0 4 1424 3526 68 60 90 chr1 110034160 110034913 -87160519 + IAPEz-int LTR ERVK 9 662 -5819 4 1424 2663 67 0 3 chr1 110034913 110035256 -87160176 + IAPEz-int LTR ERVK 1359 1700 -4781 4 1424 6894 33 4 11 chr1 110035249 110036082 -87159350 + IAPEz-int LTR ERVK 5651 6477 -4 4 1424 2534 86 65 3 chr1 110036086 110036473 -87158959 + IAPLTR2a LTR ERVK 1 411 0 4 1424 2894 97 17 0 chr1 110036623 110037037 -87158395 - BGLII LTR ERVK 0 421 1 5 1424 5811 313 75 42 chr1 110038282 110038688 -87156744 + RMER15-int LTR ERVL 2059 2481 -2518 5 1424 1939 159 25 117 chr1 110038688 110039159 -87156273 + RLTR23 LTR ERV1 1 428 -2 5 1424 5811 313 75 42 chr1 110039159 110039926 -87155506 + RMER15-int LTR ERVL 2482 3287 -1712 5 1424 189 107 0 0 chr1 110039926 110039954 -87155478 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1424 5811 313 75 42 chr1 110039954 110041624 -87153808 + RMER15-int LTR ERVL 3288 4996 -3 5 1424 324 374 71 28 chr1 110041713 110041925 -87153507 + RMER15 LTR ERVL 189 409 -166 5 1424 322 175 8 34 chr1 110042035 110042153 -87153279 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 1424 793 268 84 50 chr1 110042190 110042512 -87152920 - Lx8 LINE L1 -854 6619 6287 5 1424 261 232 0 0 chr1 110042513 110042569 -87152863 + L1_Mur1 LINE L1 5391 5446 -440 5 1424 380 321 55 35 chr1 110042571 110042716 -87152716 + B4 SINE B4 70 217 -75 5 1424 560 238 15 37 chr1 110042589 110042724 -87152708 + B1_Mur4 SINE Alu 7 138 -12 5 1424 612 294 101 36 chr1 110042838 110043219 -87152213 + Lx7 LINE L1 5509 5915 -1781 5 1424 1985 173 46 14 chr1 110043437 110043853 -87151579 - Lx4B LINE L1 -949 6109 5681 6 1424 2056 117 18 15 chr1 110043882 110044220 -87151212 - Lx LINE L1 0 6654 6316 6 1424 3291 116 6 4 chr1 110044220 110044860 -87150572 + Lx LINE L1 5423 6060 -594 6 1424 309 306 101 30 chr1 110044879 110045078 -87150354 + Lx4B LINE L1 6825 7037 -21 6 1424 252 0 0 0 chr1 110045078 110045106 -87150326 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 1424 293 93 0 18 chr1 110045878 110045933 -87149499 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1424 233 282 155 0 chr1 110046071 110046142 -87149290 - L2b LINE L2 0 3375 3294 6 1424 905 211 87 0 chr1 110047495 110047680 -87147752 - ORR1C1 LTR MaLR -7 371 171 6 1424 594 191 130 0 chr1 110047680 110047798 -87147634 + RLTR16 LTR ERVK 1 135 -370 6 1424 1017 93 0 0 chr1 110047798 110047937 -87147495 + B2_Mm2 SINE B2 1 139 -56 6 1424 1487 269 26 21 chr1 110047948 110048331 -87147101 + RLTR16 LTR ERVK 119 503 -2 6 1424 955 231 68 41 chr1 110048331 110048521 -87146911 - ORR1C1 LTR MaLR -180 198 2 7 1424 194 290 0 151 chr1 110048536 110048662 -87146770 + L2c LINE L2 3277 3383 -4 7 1424 1697 207 30 12 chr1 110049103 110049440 -87145992 + ORR1B1 LTR MaLR 52 394 0 7 1424 1745 139 0 4 chr1 110049542 110049809 -87145623 - L1_Mus4 LINE L1 -8 6646 6381 7 1424 18513 179 96 15 chr1 110049809 110054926 -87140506 - L1_Mus4 LINE L1 -534 6102 546 7 1424 21 71 0 0 chr1 110055163 110055205 -87140227 + AT_rich Low_complexity Low_complexity 1 42 0 7 1424 4608 103 5 9 chr1 110057479 110058153 -87137279 - L1Md_F2 LINE L1 -1 6581 5911 7 1424 210 37 0 0 chr1 110058492 110058519 -87136913 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1424 836 140 0 0 chr1 110058519 110058655 -87136777 - Lx3A LINE L1 -11 6970 6835 7 1424 244 288 91 0 chr1 110058762 110058828 -87136604 + B1F1 SINE Alu 29 100 -49 7 1424 2295 253 40 18 chr1 110059601 110059725 -87135707 - Lx5 LINE L1 -3 7047 6903 7 1424 432 37 0 0 chr1 110059725 110059779 -87135653 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1424 2295 253 40 18 chr1 110059779 110060210 -87135222 - Lx5 LINE L1 -148 6902 6480 7 1424 962 273 9 0 chr1 110060211 110060427 -87135005 + URR1B DNA MER1_type 8 225 0 8 1424 2241 273 42 17 chr1 110060664 110061238 -87134194 - Lx5 LINE L1 -3 7047 6460 8 1424 283 264 10 52 chr1 110063142 110063238 -87132194 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 8 1424 312 48 0 0 chr1 110063953 110063995 -87131437 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1424 233 98 0 24 chr1 110064844 110064886 -87130546 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 8 1424 252 0 0 0 chr1 110065232 110065260 -87130172 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1424 829 222 117 63 chr1 110065393 110065701 -87129731 - RLTR25B LTR ERVK -107 996 589 8 1424 389 300 60 0 chr1 110065701 110065851 -87129581 - Lx6 LINE L1 -38 7422 7264 8 1424 7328 77 5 15 chr1 110065864 110066952 -87128480 + L1_Mus1 LINE L1 5490 6566 -1 8 1424 2404 184 76 26 chr1 110067055 110067593 -87127839 - RLTR25B LTR ERVK -427 676 47 9 1424 1199 235 92 14 chr1 110067607 110067900 -87127532 + Lx6 LINE L1 7133 7448 -12 9 1424 308 333 30 1 chr1 110068261 110068377 -87127055 + B1F SINE Alu 10 127 -20 9 1424 1618 281 41 30 chr1 110068507 110069072 -87126360 - RLTR20A2 LTR ERVK -7 571 1 9 1424 3463 181 28 5 chr1 110069300 110069972 -87125460 - L1_Mm LINE L1 -601 5282 4595 9 1424 241 0 0 93 chr1 110070022 110070065 -87125367 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 9 1424 25 0 0 0 chr1 110070180 110070205 -87125227 + AT_rich Low_complexity Low_complexity 1 25 0 9 1424 276 77 0 0 chr1 110070243 110070282 -87125150 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1424 293 299 94 0 chr1 110070427 110070544 -87124888 - Lx9 LINE L1 -351 7293 7166 9 1424 435 278 0 10 chr1 110070556 110070654 -87124778 - Lx8 LINE L1 -1070 6403 6307 9 1424 2964 132 11 8 chr1 110070655 110071130 -87124302 - L1_Mm LINE L1 -52 5831 5356 1 1424 1615 105 8 0 chr1 110071131 110071379 -87124053 + L1_Mus3 LINE L1 6386 6635 -3 1 1424 223 181 47 24 chr1 110072096 110072181 -87123251 + T-rich Low_complexity Low_complexity 4 90 0 1 1424 8267 39 2 1 chr1 110072184 110073228 -87122204 - L1Md_F2 LINE L1 -2 6580 5536 1 1424 1634 274 39 34 chr1 110073230 110073822 -87121610 - Lx7 LINE L1 -8 7688 7094 1 1424 533 15 15 0 chr1 110073869 110073935 -87121497 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1 1424 212 284 80 13 chr1 110074874 110074949 -87120483 + MIRb SINE MIR 168 247 -21 1 1424 236 407 14 7 chr1 110075091 110075237 -87120195 + L3 LINE CR1 4341 4487 -2 1 1424 414 0 0 0 chr1 110075568 110075614 -87119818 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1 1424 1053 256 46 143 chr1 110075723 110076184 -87119248 + RMER20B LTR ERVK 190 605 -22 1 1424 392 294 61 5 chr1 110076186 110076398 -87119034 - L1MB2 LINE L1 -75 6096 5873 1 1424 2172 178 51 2 chr1 110077312 110077706 -87117726 + MTC LTR MaLR 1 413 -8 1 1424 467 275 24 48 chr1 110080000 110080126 -87115306 - RSINE1 SINE B4 -37 128 6 1 1424 32491 74 14 10 chr1 110080264 110081592 -87113840 - L1Md_F2 LINE L1 -2 6580 5227 1 1424 318 50 0 0 chr1 110081592 110081632 -87113800 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1424 32491 107 24 22 chr1 110081632 110086658 -87108774 - L1Md_F2 LINE L1 -657 5226 208 1 1424 1572 179 108 108 chr1 110086690 110087134 -87108298 + RLTR41 LTR ERV1 1 444 -2 1 1424 766 279 49 68 chr1 110087200 110087566 -87107866 - ORR1E LTR MaLR 0 359 1 1 1424 1107 112 0 0 chr1 110087828 110088178 -87107254 + (TCTCC)n Simple_repeat Simple_repeat 1 350 0 1 1424 537 90 0 0 chr1 110088184 110088273 -87107159 + (CTCTG)n Simple_repeat Simple_repeat 2 90 0 1 1424 35 24 0 0 chr1 110089670 110089712 -87105720 + AT_rich Low_complexity Low_complexity 1 42 0 1 1424 396 0 0 0 chr1 110089744 110089788 -87105644 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1424 2590 186 30 38 chr1 110089927 110090459 -87104973 - RLTR20A LTR ERVK -10 531 4 1 1424 23 33 0 0 chr1 110091184 110091214 -87104218 + AT_rich Low_complexity Low_complexity 1 30 0 1 1424 1065 95 7 0 chr1 110091899 110092046 -87103386 + B1_Mus1 SINE Alu 1 148 0 1 1424 408 268 47 62 chr1 110092600 110092811 -87102621 - L1ME2 LINE L1 -247 5917 5710 1 1424 483 325 99 63 chr1 110092847 110093179 -87102253 - MTE2a LTR MaLR -21 358 15 1 1424 220 53 0 50 chr1 110093659 110093699 -87101733 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 1 1424 21 36 0 0 chr1 110094043 110094071 -87101361 + AT_rich Low_complexity Low_complexity 1 28 0 1 1424 405 95 0 0 chr1 110094661 110094724 -87100708 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 1 1424 210 91 0 0 chr1 110095395 110095428 -87100004 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1424 320 392 55 13 chr1 110097100 110097335 -87098097 - MIRb SINE MIR -16 252 8 1 1424 357 173 61 43 chr1 110097365 110097480 -87097952 + Lx9 LINE L1 7483 7599 -45 1 1424 241 291 0 34 chr1 110097505 110097594 -87097838 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1424 394 329 31 12 chr1 110097599 110097759 -87097673 - RSINE1 SINE B4 -1 164 2 1 1424 2741 293 76 17 chr1 110098563 110099577 -87095855 - Lx7 LINE L1 -334 7362 6289 1 1424 213 141 42 0 chr1 110099625 110099696 -87095736 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1424 21 0 0 0 chr1 110100121 110100142 -87095290 + AT_rich Low_complexity Low_complexity 1 21 0 1 1425 268 270 39 15 chr1 110101585 110101736 -87093696 - MIRc SINE MIR -27 181 37 1 1425 496 272 51 28 chr1 110101973 110102151 -87093281 - Lx9 LINE L1 -201 7443 7262 1 1425 668 205 107 5 chr1 110102155 110102361 -87093071 + Lx9 LINE L1 7408 7634 -10 1 1425 459 350 19 0 chr1 110102469 110102629 -87092803 + RSINE1 SINE B4 3 165 0 1 1425 210 71 0 0 chr1 110102633 110102661 -87092771 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 1425 524 51 25 0 chr1 110103254 110103333 -87092099 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 1 1425 432 37 0 0 chr1 110103503 110103557 -87091875 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1425 243 114 0 0 chr1 110103571 110103615 -87091817 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 1 1425 1093 101 12 6 chr1 110103806 110103975 -87091457 - L1_Mus1 LINE L1 0 6567 6398 1 1425 180 77 0 0 chr1 110105636 110105662 -87089770 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1425 8295 32 8 1 chr1 110106121 110107290 -87088142 - L1Md_F2 LINE L1 -1 6581 5404 1 1425 390 42 0 0 chr1 110107594 110107642 -87087790 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1425 1055 103 0 0 chr1 110107810 110107955 -87087477 - B1_Mus1 SINE Alu -3 145 1 1 1425 345 234 73 27 chr1 110108141 110108251 -87087181 + B3A SINE B2 19 133 -65 1 1425 2271 72 3 3 chr1 110108609 110108914 -87086518 + L1_Mus2 LINE L1 6262 6566 0 1 1425 27 0 0 0 chr1 110108977 110109004 -87086428 + AT_rich Low_complexity Low_complexity 1 27 0 1 1425 322 320 485 5 chr1 110109784 110109980 -87085452 - Lx9 LINE L1 -269 7375 7086 1 1425 255 31 0 0 chr1 110110151 110110183 -87085249 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1425 290 350 134 35 chr1 110110395 110110679 -87084753 - MLT1A LTR MaLR -33 341 30 1 1425 920 231 16 1 chr1 110110679 110110890 -87084542 - Lx7 LINE L1 -1410 6286 6063 1 1425 23 0 0 0 chr1 110110909 110110932 -87084500 + AT_rich Low_complexity Low_complexity 1 23 0 1 1425 26 0 0 0 chr1 110112313 110112339 -87083093 + AT_rich Low_complexity Low_complexity 1 26 0 1 1425 391 372 14 14 chr1 110112351 110112498 -87082934 - RMER15 LTR ERVL -140 435 289 1 1425 443 293 39 20 chr1 110112515 110112668 -87082764 - RMER15 LTR ERVL -419 156 1 1 1425 514 350 125 14 chr1 110112967 110113399 -87082033 - L2a LINE L2 -3 3423 2944 1 1425 241 302 29 93 chr1 110113467 110113606 -87081826 - L1MC1 LINE L1 -15 6318 6189 1 1425 23 54 0 0 chr1 110114070 110114107 -87081325 + AT_rich Low_complexity Low_complexity 1 37 0 1 1425 24 0 0 0 chr1 110115349 110115373 -87080059 + AT_rich Low_complexity Low_complexity 1 24 0 1 1425 845 204 17 0 chr1 110115406 110115582 -87079850 - RLTR11A LTR ERVK -96 432 254 1 1425 261 154 88 0 chr1 110115751 110115842 -87079590 + (TA)n Simple_repeat Simple_repeat 2 100 0 1 1425 723 295 77 30 chr1 110116473 110116835 -87078597 + MTD LTR MaLR 12 419 0 1 1425 1646 16 0 10 chr1 110116868 110117061 -87078371 - L1Md_F2 LINE L1 -107 6475 6285 1 1425 429 205 278 16 chr1 110117061 110117246 -87078186 - BGLII_B LTR ERVK -238 203 1 1 1425 442 57 29 0 chr1 110118775 110118845 -87076587 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1425 285 89 0 0 chr1 110118846 110118891 -87076541 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 1 1425 254 65 0 0 chr1 110119111 110119142 -87076290 + Lx4A LINE L1 6256 6286 -772 1 1425 5230 176 17 13 chr1 110119166 110120121 -87075311 + Lx4A LINE L1 6100 7058 0 1 1425 234 0 0 0 chr1 110120621 110120647 -87074785 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1425 16813 169 48 10 chr1 110121866 110126370 -87069062 + L1_Mus3 LINE L1 1962 6638 0 1 1425 605 14 14 0 chr1 110126395 110126469 -87068963 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1 1425 531 306 105 9 chr1 110126564 110127095 -87068337 + Lx8 LINE L1 5255 5888 -1585 1 1425 41 58 0 0 chr1 110127427 110127496 -87067936 + AT_rich Low_complexity Low_complexity 1 69 0 1 1425 22 35 0 0 chr1 110127520 110127549 -87067883 + AT_rich Low_complexity Low_complexity 1 29 0 1 1425 24 21 0 60 chr1 110129169 110129219 -87066213 + AT_rich Low_complexity Low_complexity 1 47 0 1 1425 354 312 119 0 chr1 110129250 110129359 -87066073 + ORR1E LTR MaLR 1 122 -237 1 1425 351 0 0 0 chr1 110129694 110129733 -87065699 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1425 22 56 0 0 chr1 110129887 110129923 -87065509 + AT_rich Low_complexity Low_complexity 1 36 0 1 1425 22 35 0 0 chr1 110130025 110130054 -87065378 + AT_rich Low_complexity Low_complexity 1 29 0 1 1425 2061 221 22 125 chr1 110130865 110131544 -87063888 + RMER19C LTR ERVK 1 609 -2 1 1425 17358 183 40 4 chr1 110131558 110134795 -87060637 + MurERV4_19-int LTR ERVK 11 3366 -2414 1 1425 1076 210 121 4 chr1 110134814 110135053 -87060379 - RLTR17 LTR ERVK -10 682 416 1 1425 2564 137 36 0 chr1 110135053 110135497 -87059935 + MurERV4_19-int LTR ERVK 3704 4163 -1617 1 1425 314 133 0 0 chr1 110135495 110135555 -87059877 + MurERV4_19-int LTR ERVK 5678 5737 -43 1 1425 7778 148 48 23 chr1 110135555 110137255 -87058177 - Lx2 LINE L1 0 6997 5238 1 1425 4186 117 23 64 chr1 110137256 110137590 -87057842 - RMER17A LTR ERVK 0 751 417 1 1425 1745 72 0 17 chr1 110137590 110137831 -87057601 + L1Md_F2 LINE L1 6334 6570 -12 1 1425 4186 117 23 64 chr1 110137831 110138279 -87057153 - RMER17A LTR ERVK -335 416 1 1 1425 4397 172 109 67 chr1 110138279 110139370 -87056062 - Lx2 LINE L1 -641 5236 4100 1 1425 4111 143 19 24 chr1 110139365 110140649 -87054783 - L1VL4 LINE L1 -2072 1487 216 1 1425 920 278 43 83 chr1 110140719 110141122 -87054310 + RMER19C LTR ERVK 5 322 -289 1 1425 401 250 129 43 chr1 110141134 110141389 -87054043 - MTC-int LTR MaLR 0 1258 982 1 1425 1326 344 31 15 chr1 110141476 110142024 -87053408 + Lx7 LINE L1 6199 6755 -941 1 1425 924 211 6 0 chr1 110142040 110142215 -87053217 - URR1A DNA MER1_type -32 194 19 1 1425 828 243 29 29 chr1 110142220 110142428 -87053004 + Lx7 LINE L1 6751 6958 -738 1 1425 540 116 0 0 chr1 110142433 110142519 -87052913 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1425 936 132 0 0 chr1 110142767 110142919 -87052513 + (GGAGAA)n Simple_repeat Simple_repeat 4 155 0 1 1425 1568 307 57 28 chr1 110143302 110143866 -87051566 - MTC-int LTR MaLR -205 1053 474 1 1425 443 196 93 0 chr1 110143841 110143938 -87051494 - MTD LTR MaLR -313 106 1 1 1425 449 298 74 38 chr1 110145350 110145556 -87049876 - B3A SINE B2 -6 210 1 1 1425 360 359 0 74 chr1 110146433 110146677 -87048755 + L1MC3 LINE L1 6689 6914 -871 1 1425 466 276 92 0 chr1 110147600 110147850 -87047582 - L1MA8 LINE L1 0 6291 6019 1 1425 22 0 0 0 chr1 110148126 110148148 -87047284 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 222 155 16 49 chr1 110148245 110148306 -87047126 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1425 199 410 66 15 chr1 110149387 110149523 -87045909 - MIRb SINE MIR -104 164 22 2 1425 74 23 0 0 chr1 110150771 110150859 -87044573 + AT_rich Low_complexity Low_complexity 1 88 0 2 1425 652 281 28 3 chr1 110150859 110151035 -87044397 + B3A SINE B2 6 188 -28 2 1425 423 0 0 0 chr1 110151038 110151085 -87044347 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1425 375 359 53 10 chr1 110151308 110151516 -87043916 - MLT2C1 LTR ERVL -180 217 1 2 1425 31 99 0 0 chr1 110151565 110151666 -87043766 + AT_rich Low_complexity Low_complexity 1 101 0 2 1425 4770 41 0 3 chr1 110153548 110154130 -87041302 + L1Md_F3 LINE L1 6005 6584 0 2 1425 4725 168 124 10 chr1 110154266 110155063 -87040369 + RLTR25A LTR ERVK 3 896 -207 2 1425 525 92 20 10 chr1 110155063 110155162 -87040270 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1425 4725 168 124 10 chr1 110155162 110155352 -87040080 + RLTR25A LTR ERVK 897 1103 0 2 1425 40 0 0 0 chr1 110155537 110155577 -87039855 + AT_rich Low_complexity Low_complexity 1 40 0 2 1425 289 250 140 0 chr1 110156402 110156502 -87038930 + MLT1B LTR MaLR 70 183 -207 2 1425 936 85 0 0 chr1 110156599 110156728 -87038704 + B1_Mus1 SINE Alu 9 137 -11 2 1425 261 0 0 0 chr1 110156728 110156757 -87038675 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1425 1162 229 121 17 chr1 110156807 110157153 -87038279 - RLTR14 LTR ERV1 0 382 1 2 1425 567 0 0 0 chr1 110157521 110157584 -87037848 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 2 1425 368 208 69 0 chr1 110158537 110158609 -87036823 + MT2B LTR ERVL 413 489 -112 2 1425 219 105 35 17 chr1 110158616 110158674 -87036758 + GA-rich Low_complexity Low_complexity 2 60 0 2 1425 375 284 76 85 chr1 110158687 110158910 -87036522 - RMER2 LTR ERV1 0 567 347 2 1425 225 0 0 0 chr1 110159466 110159491 -87035941 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 1425 2451 82 3 0 chr1 110159738 110160069 -87035363 - L1_Mus2 LINE L1 0 6566 6235 2 1425 362 21 21 0 chr1 110160116 110160163 -87035269 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 1425 954 251 95 84 chr1 110160370 110160835 -87034597 - RLTR14-int LTR ERV1 -4401 916 447 2 1425 1125 310 28 23 chr1 110161083 110161476 -87033956 - RLTR14-int LTR ERV1 -4915 402 8 2 1425 4214 66 2 0 chr1 110161478 110162020 -87033412 + L1Md_F2 LINE L1 5043 5585 -298 2 1425 7731 59 5 3 chr1 110162021 110163013 -87032419 + L1Md_F2 LINE L1 5587 6580 -2 2 1425 21 0 0 0 chr1 110163021 110163042 -87032390 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 1510 206 7 142 chr1 110163064 110163271 -87032161 - RLTR14 LTR ERV1 0 382 189 2 1425 1193 101 6 0 chr1 110163271 110163450 -87031982 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1425 1510 206 7 142 chr1 110163450 110163484 -87031948 - RLTR14 LTR ERV1 -194 188 174 2 1425 588 29 0 0 chr1 110163484 110163554 -87031878 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 2 1425 1510 206 7 142 chr1 110163554 110163753 -87031679 - RLTR14 LTR ERV1 -209 173 1 2 1425 26 0 0 0 chr1 110163849 110163875 -87031557 + AT_rich Low_complexity Low_complexity 1 26 0 2 1425 381 102 0 0 chr1 110163991 110164050 -87031382 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1425 716 230 0 36 chr1 110164134 110164301 -87031131 + Lx9 LINE L1 7236 7396 -248 2 1425 1209 98 0 0 chr1 110164989 110165163 -87030269 + (GGAAA)n Simple_repeat Simple_repeat 3 176 0 2 1425 261 125 20 20 chr1 110165182 110165231 -87030201 - U2 snRNA snRNA -139 49 1 2 1425 1785 183 69 14 chr1 110165254 110165614 -87029818 + MTB_Mm LTR MaLR 1 380 -27 2 1425 342 45 0 0 chr1 110165615 110165659 -87029773 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 1425 441 0 0 0 chr1 110166294 110166343 -87029089 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1425 400 317 27 14 chr1 110166533 110166680 -87028752 + MLT1A1 LTR MaLR 255 403 -5 2 1425 1326 215 40 8 chr1 110167388 110167685 -87027747 - RMER12 LTR ERVK -1540 308 6 2 1425 258 95 0 0 chr1 110168443 110168485 -87026947 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1425 427 344 82 22 chr1 110168703 110169105 -87026327 + L1M2 LINE L1 4615 5040 -1103 2 1425 553 291 51 204 chr1 110169340 110169790 -87025642 - RMER20B LTR ERVK -28 599 219 2 1425 27 49 0 0 chr1 110170746 110170787 -87024645 + AT_rich Low_complexity Low_complexity 1 41 0 2 1425 4192 61 0 0 chr1 110171356 110171881 -87023551 + L1Md_F2 LINE L1 6058 6582 0 2 1425 1811 234 113 34 chr1 110172009 110172606 -87022826 + RMER6C LTR ERVK 1 690 0 2 1425 253 60 39 39 chr1 110173368 110173420 -87022012 + (TTTTTG)n Simple_repeat Simple_repeat 6 57 0 2 1425 311 396 25 5 chr1 110173532 110173735 -87021697 - MLT1B LTR MaLR -167 223 17 2 1425 489 226 89 30 chr1 110174004 110174173 -87021259 - MTD LTR MaLR -14 405 227 2 1425 1348 222 101 17 chr1 110174187 110174602 -87020830 - RLTR12B LTR ERVK -19 509 1 2 1425 423 0 0 0 chr1 110174880 110174927 -87020505 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1425 855 320 57 15 chr1 110175001 110175334 -87020098 - MT2A LTR ERVL -74 459 113 2 1425 294 350 29 0 chr1 110175397 110175534 -87019898 + MLT1E2 LTR MaLR 47 187 -440 2 1425 816 187 141 5 chr1 110175552 110175751 -87019681 - URR1A DNA MER1_type 0 226 1 2 1425 656 275 73 104 chr1 110175823 110176234 -87019198 - RMER2 LTR ERV1 -28 539 1 2 1425 6313 44 4 0 chr1 110176318 110177087 -87018345 - L1Md_F3 LINE L1 0 6584 5813 2 1425 1467 175 78 24 chr1 110177201 110177494 -87017938 - RLTR27 LTR ERVK 0 309 1 2 1425 437 285 156 0 chr1 110177494 110177673 -87017759 - MTC-int LTR MaLR -308 950 744 2 1425 1027 265 8 19 chr1 110177680 110177942 -87017490 - MTC-int LTR MaLR -715 543 285 2 1425 2394 238 13 24 chr1 110178558 110179093 -87016339 + RMER15 LTR ERVL 11 539 -36 2 1425 23 33 0 0 chr1 110179602 110179632 -87015800 + AT_rich Low_complexity Low_complexity 1 30 0 2 1425 614 210 19 29 chr1 110180077 110180234 -87015198 + RMER20B LTR ERVK 7 161 -355 2 1425 260 304 38 0 chr1 110180423 110180502 -87014930 + RMER20A LTR ERVK 435 516 0 2 1425 521 341 47 18 chr1 110181297 110181467 -87013965 - B3A SINE B2 -15 183 9 2 1425 259 365 9 18 chr1 110182729 110182838 -87012594 - Lx8 LINE L1 -276 7197 7090 2 1425 685 186 81 31 chr1 110182857 110183018 -87012414 + RMER17C LTR ERVK 242 410 0 2 1425 1657 230 35 101 chr1 110183097 110183720 -87011712 + RMER17C-int LTR ERVK 214 795 -2443 2 1425 39339 31 0 6 chr1 110184011 110190197 -87005235 - L1Md_T LINE L1 0 6582 439 2 1425 352 176 15 0 chr1 110190281 110190349 -87005083 + RMER17C-int LTR ERVK 1162 1230 -2008 2 1425 3057 160 84 42 chr1 110190364 110191003 -87004429 + RMER17C-int LTR ERVK 1119 1784 -1454 2 1425 586 208 84 32 chr1 110191015 110191169 -87004263 + RMER17C LTR ERVK 249 410 0 2 1425 1662 206 215 0 chr1 110192196 110192629 -87002803 + RLTR11A LTR ERVK 1 526 -2 2 1425 2209 139 62 10 chr1 110192790 110192989 -87002443 + BGLII LTR ERVK 1 219 -202 2 1425 1154 20 26 0 chr1 110192989 110193142 -87002290 + (GA)n Simple_repeat Simple_repeat 1 157 0 2 1425 2209 139 62 10 chr1 110193142 110193342 -87002090 + BGLII LTR ERVK 220 420 -1 2 1425 29030 111 8 4 chr1 110194102 110197605 -86997827 - L1_Mus2 LINE L1 -1 6565 3039 2 1425 3337 35 5 0 chr1 110197605 110197999 -86997433 - MTA_Mm LTR MaLR 0 396 1 2 1425 29030 125 8 17 chr1 110197999 110200665 -86994767 - L1_Mus2 LINE L1 -2845 3038 411 2 1425 189 0 0 0 chr1 110200683 110200704 -86994728 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 1425 631 47 0 36 chr1 110202329 110202439 -86992993 - L1Md_F2 LINE L1 -5 6577 6472 2 1425 25 51 0 0 chr1 110202497 110202536 -86992896 + AT_rich Low_complexity Low_complexity 1 39 0 2 1425 509 191 9 0 chr1 110203127 110203242 -86992190 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 1425 3332 139 39 6 chr1 110203299 110203525 -86991907 + Lx4A LINE L1 5317 5542 -335 2 1425 1840 75 63 4 chr1 110203525 110203779 -86991653 + L1Md_F2 LINE L1 6298 6566 -16 2 1425 420 55 0 0 chr1 110203779 110203834 -86991598 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 1425 5719 196 49 29 chr1 110203834 110205365 -86990067 + Lx4A LINE L1 5543 7058 0 2 1425 379 112 44 11 chr1 110205366 110205456 -86989976 + GA-rich Low_complexity Low_complexity 4 96 0 2 1425 250 183 17 0 chr1 110205510 110205570 -86989862 + Lx9 LINE L1 7582 7642 -2 2 1425 631 276 60 0 chr1 110205613 110205812 -86989620 + B3 SINE B2 4 214 -2 2 1425 387 258 10 40 chr1 110207786 110207887 -86987545 - Lx9 LINE L1 -943 6701 6604 2 1425 12299 79 4 8 chr1 110207892 110209573 -86985859 + L1Md_F2 LINE L1 3912 5584 -299 2 1425 7170 67 40 0 chr1 110209576 110210521 -86984911 + L1Md_F2 LINE L1 5588 6570 -12 2 1425 21 0 0 0 chr1 110210696 110210717 -86984715 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 27 29 0 0 chr1 110210752 110210786 -86984646 + AT_rich Low_complexity Low_complexity 1 34 0 2 1425 472 366 78 51 chr1 110210995 110211366 -86984066 + MLT1B LTR MaLR 5 385 -5 2 1425 180 111 0 0 chr1 110213645 110213672 -86981760 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1425 22 0 0 0 chr1 110214843 110214865 -86980567 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 450 0 0 0 chr1 110215081 110215131 -86980301 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1425 229 308 83 7 chr1 110215131 110215275 -86980157 + L1M5 LINE L1 5632 5786 -378 2 1425 906 230 178 21 chr1 110216814 110217125 -86978307 + ORR1E LTR MaLR 3 376 -3 2 1425 333 0 0 0 chr1 110217307 110217344 -86978088 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1425 180 0 0 0 chr1 110217344 110217363 -86978069 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1425 216 0 0 0 chr1 110217379 110217403 -86978029 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1425 303 113 0 0 chr1 110217403 110217456 -86977976 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1425 282 78 19 56 chr1 110217992 110218046 -86977386 - RMER16 LTR ERVK -101 432 381 2 1425 37321 30 1 0 chr1 110218046 110225126 -86970306 - L1Md_T LINE L1 -4 6581 1 2 1425 904 195 0 0 chr1 110226443 110226602 -86968830 + B2_Mm2 SINE B2 4 162 -33 2 1425 206 159 23 0 chr1 110226602 110226646 -86968786 + T-rich Low_complexity Low_complexity 1 45 0 2 1425 1143 68 0 0 chr1 110226648 110226795 -86968637 - B1_Mm SINE Alu 0 147 1 2 1425 449 17 17 0 chr1 110226890 110226948 -86968484 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 2 1425 2274 104 3 3 chr1 110227082 110227401 -86968031 - ORR1A2 LTR MaLR -8 319 1 3 1425 817 262 56 11 chr1 110227430 110227758 -86967674 - L1MA6 LINE L1 -312 5979 5623 3 1425 32 26 0 0 chr1 110228007 110228046 -86967386 + AT_rich Low_complexity Low_complexity 1 39 0 3 1425 203 133 0 0 chr1 110228217 110228247 -86967185 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1425 253 370 120 0 chr1 110228248 110228356 -86967076 - RSINE1 SINE B4 0 165 45 3 1425 402 220 140 0 chr1 110228483 110228583 -86966849 + Lx9 LINE L1 7142 7255 -389 3 1425 1250 287 81 25 chr1 110228650 110229037 -86966395 + MTD LTR MaLR 6 419 0 3 1425 511 266 174 76 chr1 110229038 110229232 -86966200 + MTEb LTR MaLR 82 289 -90 3 1425 3223 37 25 0 chr1 110229232 110229633 -86965799 - RLTR10A LTR ERVK 0 411 1 3 1425 511 266 174 76 chr1 110229633 110229702 -86965730 + MTEb LTR MaLR 290 371 -8 3 1425 253 297 83 12 chr1 110229706 110229794 -86965638 - ORR1E LTR MaLR -264 106 13 3 1425 23 33 0 0 chr1 110229841 110229871 -86965561 + AT_rich Low_complexity Low_complexity 1 30 0 3 1425 2749 211 55 12 chr1 110230680 110231357 -86964075 + L1_Mur2 LINE L1 1698 2403 -3483 3 178 5420 142 18 10 chr1 110231353 110232313 -86963119 + L1_Mur2 LINE L1 4372 5338 -539 3 1426 3609 234 82 15 chr1 110232307 110233313 -86962119 + Lx2B LINE L1 5926 6998 -2 3 1426 22 0 0 0 chr1 110233314 110233336 -86962096 + AT_rich Low_complexity Low_complexity 1 22 0 3 1426 931 177 0 0 chr1 110233523 110233670 -86961762 + Lx3C LINE L1 6697 6843 -133 3 1426 3816 213 60 18 chr1 110233742 110235035 -86960397 + L1_Mur3 LINE L1 259 1611 -4269 3 1426 3328 253 92 54 chr1 110235041 110235462 -86959970 + Lx7 LINE L1 5749 6209 -1487 3 1426 414 57 0 0 chr1 110235462 110235515 -86959917 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1426 3328 253 92 54 chr1 110235515 110236247 -86959185 + Lx7 LINE L1 6210 6945 -751 3 1426 219 114 0 0 chr1 110236294 110236329 -86959103 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1426 1544 175 98 31 chr1 110236368 110236820 -86958612 - RLTR20D LTR ERVK -25 543 1 3 1426 1111 239 25 37 chr1 110236837 110236933 -86958499 + Lx7 LINE L1 7364 7461 -235 3 1426 342 0 0 0 chr1 110236933 110236971 -86958461 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1426 216 0 0 0 chr1 110236971 110236994 -86958438 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1426 1111 239 25 37 chr1 110236994 110237217 -86958215 + Lx7 LINE L1 7462 7679 -17 3 1426 540 262 79 8 chr1 110237220 110237474 -86957958 + L1M2 LINE L1 5095 5366 -777 3 1426 1929 158 73 8 chr1 110237936 110238294 -86957138 + Lx2 LINE L1 6614 6994 -3 3 1426 183 162 0 0 chr1 110238410 110238447 -86956985 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1426 1582 198 31 143 chr1 110238793 110239277 -86956155 + RLTR23 LTR ERV1 1 430 0 3 1426 231 0 50 25 chr1 110239278 110239318 -86956114 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1426 25 0 0 0 chr1 110241788 110241813 -86953619 + AT_rich Low_complexity Low_complexity 1 25 0 3 1426 381 75 0 0 chr1 110241978 110242031 -86953401 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 1426 258 136 0 0 chr1 110242766 110242810 -86952622 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1426 324 102 0 0 chr1 110242966 110243015 -86952417 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1426 2320 185 84 82 chr1 110244224 110244911 -86950521 + RMER6C LTR ERVK 1 689 -1 3 1426 367 354 8 0 chr1 110245061 110245188 -86950244 - Lx9 LINE L1 -1030 6614 6487 3 1426 1537 342 106 30 chr1 110245574 110246723 -86948709 - Lx8 LINE L1 -41 7432 6197 3 1426 492 18 0 0 chr1 110246789 110246846 -86948586 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1426 997 320 51 28 chr1 110246985 110247339 -86948093 + ORR1D2 LTR MaLR 5 366 -4 3 1426 852 242 57 45 chr1 110247348 110247612 -86947820 + ORR1D2-int LTR MaLR 6 272 -1098 3 1426 38460 5 0 0 chr1 110247613 110252747 -86942685 + L1Md_A LINE L1 452 5586 -297 3 1426 8994 2 1 0 chr1 110252747 110253742 -86941690 + L1Md_A LINE L1 5587 6582 0 3 1426 510 17 0 0 chr1 110254652 110254711 -86940721 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1426 357 136 0 0 chr1 110254711 110254777 -86940655 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1426 255 211 53 0 chr1 110254906 110254963 -86940469 - ORR1D1 LTR MaLR 0 419 360 3 1426 1098 258 40 100 chr1 110254977 110255348 -86940084 - ORR1D1 LTR MaLR -25 349 1 3 1426 418 292 171 38 chr1 110255348 110255616 -86939816 - MTD LTR MaLR -60 359 35 3 1426 978 186 0 0 chr1 110255616 110255793 -86939639 - URR1A DNA MER1_type 0 226 50 3 1426 961 236 54 42 chr1 110256594 110256855 -86938577 - ORR1C1 LTR MaLR 0 378 115 3 1426 263 366 30 22 chr1 110256909 110257043 -86938389 + B3 SINE B2 57 191 -25 3 1426 25 65 0 0 chr1 110257101 110257147 -86938285 + AT_rich Low_complexity Low_complexity 1 46 0 3 1426 1182 296 110 56 chr1 110257167 110257941 -86937491 - Lx9 LINE L1 -37 7607 6792 3 1426 784 291 127 52 chr1 110260474 110261000 -86934432 - RMER13A LTR ERVK -212 696 98 3 1426 24 0 0 0 chr1 110261668 110261692 -86933740 + AT_rich Low_complexity Low_complexity 1 24 0 3 1426 805 346 71 0 chr1 110261875 110262129 -86933303 - B4 SINE B4 -4 288 17 3 1426 517 207 62 75 chr1 110262251 110262397 -86933035 + MT2A LTR ERVL 1 144 -389 3 1426 548 325 76 34 chr1 110262392 110262674 -86932758 + MT2A LTR ERVL 317 593 -8 3 1426 22 70 0 0 chr1 110262939 110262982 -86932450 + AT_rich Low_complexity Low_complexity 1 43 0 3 1426 873 286 74 43 chr1 110263149 110263569 -86931863 + Lx7 LINE L1 6914 7346 -350 3 1426 205 196 22 0 chr1 110263599 110263645 -86931787 + T-rich Low_complexity Low_complexity 4 50 0 3 1426 254 26 53 0 chr1 110263646 110263684 -86931748 + (TCTCTG)n Simple_repeat Simple_repeat 6 45 0 3 1426 231 36 0 0 chr1 110263706 110263734 -86931698 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1426 186 43 0 0 chr1 110263904 110263927 -86931505 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 3 1426 318 325 47 0 chr1 110264418 110264609 -86930823 + L1MD LINE L1 5318 5517 -842 3 1426 459 35 0 0 chr1 110264786 110264843 -86930589 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1426 1275 308 12 7 chr1 110264952 110265384 -86930048 - HERVL40-int LTR ERVL -2096 3434 3001 3 1426 518 344 25 90 chr1 110266976 110267375 -86928057 - HERVL40-int LTR ERVL -4743 787 415 3 1426 2919 219 18 8 chr1 110267813 110268498 -86926934 - Lx2B LINE L1 -13 6984 6254 3 1426 3478 155 37 11 chr1 110268522 110269174 -86926258 + L1_Mur2 LINE L1 4656 5324 -553 3 1426 728 379 63 2 chr1 110269580 110270038 -86925394 - Lx8 LINE L1 -263 7210 6725 3 1426 28 48 0 0 chr1 110270091 110270133 -86925299 + AT_rich Low_complexity Low_complexity 1 42 0 3 1426 26 50 0 0 chr1 110273229 110273269 -86922163 + AT_rich Low_complexity Low_complexity 1 40 0 3 1426 3356 38 2 0 chr1 110276662 110277057 -86918375 - MTA_Mm LTR MaLR 0 396 1 3 1426 635 296 84 30 chr1 110277613 110277850 -86917582 - ORR1D2 LTR MaLR 0 370 121 3 1426 299 307 32 73 chr1 110277957 110278080 -86917352 - ORR1D2 LTR MaLR -248 122 5 3 1426 3414 186 19 11 chr1 110278253 110278882 -86916550 - Lx4A LINE L1 -1 7057 6424 3 1426 1052 109 49 0 chr1 110278883 110279066 -86916366 + L1_Mur2 LINE L1 4795 4986 -891 3 1426 22 0 0 0 chr1 110279321 110279343 -86916089 + AT_rich Low_complexity Low_complexity 1 22 0 3 1426 261 0 0 0 chr1 110279590 110279619 -86915813 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1426 517 361 16 22 chr1 110279718 110279902 -86915530 + B3A SINE B2 1 183 -15 3 1426 795 273 29 35 chr1 110279983 110280325 -86915107 + L1_Mur3 LINE L1 2532 2871 -3009 3 1426 381 306 48 5 chr1 110280779 110280966 -86914466 - Lx9 LINE L1 -161 7483 7289 3 1426 1275 218 63 3 chr1 110281402 110281687 -86913745 - ORR1C2 LTR MaLR -73 311 10 3 1426 1538 214 96 3 chr1 110282557 110282889 -86912543 - ORR1B2 LTR MaLR -2 365 3 3 1426 1426 219 49 73 chr1 110284253 110284622 -86910810 + RLTR23 LTR ERV1 1 360 -70 3 1426 1306 278 81 6 chr1 110284648 110284995 -86910437 - MTD LTR MaLR -14 405 33 3 1426 534 286 34 62 chr1 110285017 110285465 -86909967 - MTD-int LTR MaLR 0 1258 755 3 1426 387 0 0 0 chr1 110285488 110285531 -86909901 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1426 665 278 77 37 chr1 110286653 110286926 -86908506 - MER58B DNA MER1_type -10 331 48 3 1426 930 244 114 0 chr1 110286966 110287274 -86908158 + Zaphod DNA Tip100 3614 3956 -75 3 1426 279 79 0 0 chr1 110288875 110288913 -86906519 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1426 306 246 49 101 chr1 110288925 110289192 -86906240 + RMER17C LTR ERVK 1 253 -157 3 1426 1660 277 88 32 chr1 110289539 110290258 -86905174 - Lx9 LINE L1 -451 7193 6435 3 1426 192 40 0 0 chr1 110290279 110290304 -86905128 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1426 1109 286 40 14 chr1 110290361 110290904 -86904528 + Lx9 LINE L1 5385 5974 -1670 3 1426 813 244 58 43 chr1 110291010 110291336 -86904096 - Lx9 LINE L1 -262 7382 7052 3 1426 22 70 0 0 chr1 110291408 110291451 -86903981 + AT_rich Low_complexity Low_complexity 1 43 0 3 1426 4198 130 21 20 chr1 110291629 110292330 -86903102 - L1_Mus3 LINE L1 -2 6636 5935 3 1426 3240 61 28 0 chr1 110292344 110292930 -86902502 + L1_Mus2 LINE L1 5439 6037 -529 3 1426 425 76 15 0 chr1 110293245 110293311 -86902121 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 3 1426 30493 50 82 6 chr1 110293314 110299055 -86896377 - L1Md_F2 LINE L1 0 6582 440 3 1426 4012 193 15 5 chr1 110299152 110299939 -86895493 - Lx2 LINE L1 -2 6995 6201 3 1426 2549 129 1 25 chr1 110299947 110300547 -86894885 + Lx2 LINE L1 5426 6012 -985 3 1426 1104 90 7 0 chr1 110300547 110300692 -86894740 + B1_Mm SINE Alu 1 146 -1 3 1426 582 210 11 6 chr1 110300741 110300918 -86894514 + Lx2 LINE L1 5999 6176 -821 3 1426 462 79 0 0 chr1 110300931 110300994 -86894438 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 3 1426 2804 204 65 13 chr1 110300996 110301626 -86893806 - Lx5 LINE L1 -478 6572 5910 3 1426 2866 0 0 0 chr1 110301630 110301947 -86893485 - L1Md_T LINE L1 0 6582 6266 3 1426 23229 48 0 0 chr1 110301947 110305041 -86890391 - L1Md_Gf LINE L1 -1587 4299 1206 3 1426 3533 0 0 0 chr1 110305007 110305431 -86890001 - L1Md_Gf LINE L1 -5380 1142 719 3 1426 2271 90 28 19 chr1 110305431 110305795 -86889637 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1426 52382 30 8 6 chr1 110305799 110312251 -86883181 - IAPEz-int LTR ERVK -3 6478 8 3 1426 2271 90 28 19 chr1 110312251 110312615 -86882817 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1426 5791 20 15 0 chr1 110312615 110313453 -86881979 - L1Md_Gf LINE L1 -5798 724 1 3 1426 1358 144 151 3 chr1 110313456 110313748 -86881684 - Lx5 LINE L1 -1129 5921 5587 3 1426 270 246 0 66 chr1 110313772 110313833 -86881599 - B3 SINE B2 -154 62 6 4 1426 21 57 0 0 chr1 110314677 110314712 -86880720 + AT_rich Low_complexity Low_complexity 1 35 0 4 1426 21 0 0 0 chr1 110315088 110315109 -86880323 + AT_rich Low_complexity Low_complexity 1 21 0 4 1426 23 33 0 0 chr1 110315244 110315274 -86880158 + AT_rich Low_complexity Low_complexity 1 30 0 4 1426 612 339 107 18 chr1 110315503 110315831 -86879601 + MTD LTR MaLR 43 399 -20 4 1426 255 357 90 30 chr1 110316520 110316653 -86878779 + B1F SINE Alu 8 148 -1 4 1426 265 314 42 50 chr1 110317017 110317538 -86877894 + L1VL4 LINE L1 193 568 -5790 4 1426 2465 165 13 9 chr1 110317555 110318369 -86877063 + L1VL4 LINE L1 500 1317 -2298 4 1426 23 54 0 0 chr1 110318971 110319008 -86876424 + AT_rich Low_complexity Low_complexity 1 37 0 4 1426 237 33 0 0 chr1 110319480 110319510 -86875922 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1426 22 56 0 0 chr1 110319614 110319650 -86875782 + AT_rich Low_complexity Low_complexity 1 36 0 4 1426 23 92 0 0 chr1 110320247 110320312 -86875120 + AT_rich Low_complexity Low_complexity 1 65 0 4 1426 574 224 62 22 chr1 110320655 110320833 -86874599 - Lx9 LINE L1 -388 7256 7072 4 1426 24 32 0 0 chr1 110320942 110320973 -86874459 + AT_rich Low_complexity Low_complexity 1 31 0 4 1426 359 233 38 19 chr1 110321214 110321319 -86874113 + L1_Mur1 LINE L1 44 150 -6832 4 1426 3814 94 60 2 chr1 110321319 110321937 -86873495 + MusHAL1 LINE L1 973 1626 -1086 4 1426 2064 151 41 0 chr1 110321937 110322275 -86873157 + Lx3A LINE L1 6626 6977 -4 4 1426 24 0 0 0 chr1 110322275 110322299 -86873133 + AT_rich Low_complexity Low_complexity 1 24 0 4 1426 333 0 0 0 chr1 110323069 110323106 -86872326 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1426 1960 281 46 24 chr1 110323120 110323888 -86871544 + Lx7 LINE L1 5039 5825 -55 4 1426 207 0 0 0 chr1 110323888 110323911 -86871521 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1426 1960 284 63 16 chr1 110323911 110324255 -86871177 + Lx7 LINE L1 5826 6184 -1512 4 1426 24646 82 6 6 chr1 110324254 110327520 -86867912 + L1Md_F2 LINE L1 1976 5234 -649 4 1426 207 0 0 0 chr1 110327520 110327543 -86867889 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1426 24646 82 6 6 chr1 110327543 110327886 -86867546 + L1Md_F2 LINE L1 5235 5584 -299 4 1426 7924 49 11 0 chr1 110327886 110328868 -86866564 + L1Md_F2 LINE L1 5587 6579 -3 4 1426 1166 309 52 5 chr1 110328920 110329359 -86866073 + Lx7 LINE L1 6254 6713 -983 4 1426 2139 110 146 3 chr1 110329940 110330296 -86865136 + MTB_Mm LTR MaLR 1 407 0 4 1426 22 0 0 0 chr1 110330631 110330653 -86864779 + AT_rich Low_complexity Low_complexity 1 22 0 4 1426 2013 282 98 64 chr1 110330950 110332262 -86863170 + Lx6 LINE L1 5792 7434 -26 4 1426 253 125 0 0 chr1 110332280 110332320 -86863112 + L1_Mur3 LINE L1 4515 4554 -1326 4 1426 3093 66 2 2 chr1 110332337 110332733 -86862699 + MTA_Mm LTR MaLR 1 396 0 4 1426 1457 229 136 79 chr1 110333444 110333686 -86861746 - MT2B LTR ERVL 0 601 385 4 1426 2207 219 64 81 chr1 110333686 110334386 -86861046 - RMER6C LTR ERVK 0 690 3 4 1426 1457 229 136 79 chr1 110334386 110334711 -86860721 - MT2B LTR ERVL -217 384 2 4 1426 364 332 108 49 chr1 110335981 110336269 -86859163 + L4 LINE RTE 1509 1813 -216 4 1426 270 0 0 0 chr1 110336554 110336584 -86858848 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1426 29 0 0 0 chr1 110336831 110336860 -86858572 + AT_rich Low_complexity Low_complexity 1 29 0 4 1426 207 100 0 0 chr1 110336883 110336913 -86858519 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1426 279 114 0 0 chr1 110338432 110338476 -86856956 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1426 397 177 21 0 chr1 110338561 110338645 -86856787 + CT-rich Low_complexity Low_complexity 15 100 0 4 1426 899 124 0 0 chr1 110338645 110338782 -86856650 - B1_Mus1 SINE Alu -7 141 5 4 1426 397 177 21 0 chr1 110338782 110338793 -86856639 + polypyrimidine Low_complexity Low_complexity 4 14 0 4 1426 357 249 136 88 chr1 110338852 110339191 -86856241 - Lx9 LINE L1 -2 7642 7288 4 1426 211 118 57 38 chr1 110341612 110341665 -86853767 + T-rich Low_complexity Low_complexity 1 54 0 4 1426 542 278 11 49 chr1 110342061 110342246 -86853186 - Lx6 LINE L1 -27 7433 7256 4 1426 11702 221 55 25 chr1 110342276 110343255 -86852177 - Lx5 LINE L1 -677 6373 5350 4 1426 2782 72 0 0 chr1 110343255 110343614 -86851818 - L1_Mus1 LINE L1 -1 6566 6208 4 1426 11702 232 99 51 chr1 110343614 110343782 -86851650 - Lx5 LINE L1 -531 5349 5219 4 1426 1965 125 16 16 chr1 110343782 110344091 -86851341 - RLTR27 LTR ERVK 0 309 1 4 1426 11702 232 99 51 chr1 110344091 110345108 -86850324 - Lx5 LINE L1 -662 5218 4116 4 1426 995 103 0 14 chr1 110345108 110345255 -86850177 - B1_Mus2 SINE Alu -2 145 1 4 1426 11702 232 99 51 chr1 110345255 110345449 -86849983 - Lx5 LINE L1 -1765 4115 3848 4 1426 201 39 0 0 chr1 110345449 110345475 -86849957 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1426 11702 232 99 51 chr1 110345475 110346130 -86849302 - Lx5 LINE L1 -2033 3847 3205 4 1426 1011 128 0 0 chr1 110346130 110346294 -86849138 + (TTTC)n Simple_repeat Simple_repeat 3 166 0 4 1426 11702 232 99 51 chr1 110346294 110347543 -86847889 - Lx5 LINE L1 -2676 3204 1918 4 1426 795 50 0 0 chr1 110347543 110347643 -86847789 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 1426 11702 209 140 35 chr1 110347643 110348513 -86846919 - Lx5 LINE L1 -3963 1917 940 4 1426 429 331 46 0 chr1 110350080 110350231 -86845201 + L3 LINE CR1 4113 4270 -219 4 1426 2540 84 0 0 chr1 110350257 110350590 -86844842 - L1_Mus2 LINE L1 -129 5754 5422 4 1426 6152 78 7 1 chr1 110350591 110351414 -86844018 + L1_Mus2 LINE L1 5738 6565 -1 4 1426 820 365 35 26 chr1 110352585 110353010 -86842422 - Lx8 LINE L1 -154 7319 6891 4 1426 1433 170 48 69 chr1 110353010 110353301 -86842131 + ORR1A4 LTR MaLR 1 285 -44 4 1426 1194 34 7 0 chr1 110353301 110353448 -86841984 + B1_Mus1 SINE Alu 1 148 0 4 1426 279 0 0 0 chr1 110353454 110353485 -86841947 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1426 517 296 44 16 chr1 110353533 110353715 -86841717 + Lx8 LINE L1 6829 7015 -458 4 1426 585 76 0 0 chr1 110353810 110353889 -86841543 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 1426 4344 172 31 20 chr1 110354469 110355335 -86840097 - Lx2 LINE L1 0 6997 6122 4 1426 224 333 27 0 chr1 110355370 110355445 -86839987 - PB1D10 SINE Alu -33 84 8 4 1426 306 0 0 0 chr1 110356162 110356196 -86839236 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4 1426 6659 52 1 0 chr1 110357400 110358231 -86837201 - L1Md_F2 LINE L1 0 6582 5751 4 1426 503 195 0 74 chr1 110358433 110358555 -86836877 + RMER10A LTR ERVL 313 425 -17 4 1426 271 146 127 0 chr1 110358879 110358934 -86836498 - RLTR11A2 LTR ERVK 0 527 466 4 1426 282 190 52 0 chr1 110359384 110359442 -86835990 + RLTR42-int LTR ERVK 1547 1607 -3915 4 1426 1072 275 48 60 chr1 110359591 110359990 -86835442 + RMER10A LTR ERVL 1 394 -48 4 1426 234 188 0 0 chr1 110359994 110360042 -86835390 + A-rich Low_complexity Low_complexity 4 51 0 4 1426 635 276 97 13 chr1 110360050 110360278 -86835154 + Lx9 LINE L1 7086 7332 -312 4 1426 1593 228 26 67 chr1 110360302 110360871 -86834561 - MYSERV16_I-int LTR ERVK -709 1617 1072 4 1426 263 246 132 58 chr1 110360871 110360992 -86834440 - RMER4B LTR ERVK -20 565 436 4 1426 483 317 149 46 chr1 110361387 110361750 -86833682 - RMER13A LTR ERVK -481 427 2 4 1426 2982 246 40 100 chr1 110362145 110362381 -86833051 - Lx5 LINE L1 -3 7047 6790 4 178 2775 49 0 3 chr1 110362381 110362728 -86832704 - ORR1A0 LTR MaLR 0 346 1 4 1427 2982 246 40 100 chr1 110362728 110363407 -86832025 - Lx5 LINE L1 -261 6789 6187 4 1427 344 317 19 47 chr1 110363679 110363785 -86831647 + RSINE1 SINE B4 2 104 -61 4 1427 342 0 0 0 chr1 110363791 110363829 -86831603 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 1427 1131 160 28 133 chr1 110363900 110364260 -86831172 - RLTRETN_Mm LTR ERVK 0 322 1 4 1427 3470 199 10 12 chr1 110364260 110364930 -86830502 - Lx2B LINE L1 -104 6896 6228 4 1427 244 200 0 0 chr1 110364932 110364977 -86830455 + Lx4B LINE L1 6187 6231 -827 4 1427 2764 207 50 19 chr1 110364998 110365579 -86829853 - Lx2B LINE L1 -4 6996 6398 4 1427 231 175 0 24 chr1 110365579 110365620 -86829812 + RSINE1 SINE B4 89 128 -37 4 1427 468 35 0 0 chr1 110365646 110365704 -86829728 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1427 22 0 0 0 chr1 110366670 110366692 -86828740 + AT_rich Low_complexity Low_complexity 1 22 0 4 1427 23 0 0 0 chr1 110366746 110366769 -86828663 + AT_rich Low_complexity Low_complexity 1 23 0 4 1427 26 0 0 0 chr1 110369986 110370012 -86825420 + AT_rich Low_complexity Low_complexity 1 26 0 4 1427 288 299 46 0 chr1 110370092 110370179 -86825253 - RSINE1 SINE B4 -38 127 37 4 1427 21 0 0 0 chr1 110370384 110370405 -86825027 + AT_rich Low_complexity Low_complexity 1 21 0 4 1427 29 0 0 0 chr1 110370688 110370717 -86824715 + AT_rich Low_complexity Low_complexity 1 29 0 4 1427 275 194 29 114 chr1 110370822 110370927 -86824505 - Lx9 LINE L1 -47 7597 7502 4 1427 219 36 0 0 chr1 110371785 110371813 -86823619 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1427 35 41 0 0 chr1 110372047 110372096 -86823336 + AT_rich Low_complexity Low_complexity 1 49 0 4 1427 441 0 0 0 chr1 110372154 110372203 -86823229 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1427 279 0 0 0 chr1 110372203 110372233 -86823199 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1427 626 247 6 19 chr1 110372234 110372395 -86823037 + Lx2B LINE L1 6348 6506 -494 4 1427 278 321 130 55 chr1 110372392 110372685 -86822747 - Lx8 LINE L1 -787 6686 6372 4 1427 357 176 0 0 chr1 110372695 110372769 -86822663 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1427 821 318 84 19 chr1 110372771 110373082 -86822350 - MTD LTR MaLR -24 395 65 4 1427 331 346 48 0 chr1 110373136 110373324 -86822108 - Lx7 LINE L1 -24 7672 7476 4 1427 248 266 8 39 chr1 110373415 110373544 -86821888 + A-rich Low_complexity Low_complexity 2 126 0 4 1427 245 276 69 0 chr1 110373553 110373640 -86821792 - Lx7 LINE L1 -330 7366 7274 4 1427 1798 153 33 27 chr1 110373675 110374010 -86821422 - RLTR22_Mur LTR ERVK -1511 337 1 4 1427 447 311 95 12 chr1 110374010 110374179 -86821253 - Lx7 LINE L1 -522 7174 6992 4 1427 718 271 0 0 chr1 110374392 110374558 -86820874 - Lx7 LINE L1 -728 6968 6803 4 1427 1819 189 230 56 chr1 110374715 110375303 -86820129 - RMER6C LTR ERVK 0 690 1 4 1427 376 234 164 0 chr1 110375355 110375483 -86819949 + Lx8 LINE L1 5601 5749 -1947 4 1427 292 113 42 0 chr1 110375896 110375967 -86819465 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 1427 416 270 75 70 chr1 110376012 110376261 -86819171 + Lx8 LINE L1 6862 7100 -596 4 1427 1137 270 8 141 chr1 110377370 110377815 -86817617 - RLTR23 LTR ERV1 -2 428 47 4 1427 369 151 0 27 chr1 110377815 110377890 -86817542 - L1Md_F2 LINE L1 -12 6570 6498 5 1427 1137 270 8 141 chr1 110377890 110377932 -86817500 - RLTR23 LTR ERV1 -384 46 6 4 1427 1333 309 66 96 chr1 110379420 110380296 -86815136 - Lx9 LINE L1 -290 7354 6505 5 1427 537 126 0 0 chr1 110380658 110380769 -86814663 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 1427 257 260 13 0 chr1 110380839 110380916 -86814516 - L1_Rod LINE L1 -1197 4650 4573 5 1427 1594 52 0 0 chr1 110380918 110381114 -86814318 + L1_Mm LINE L1 5391 5615 -553 5 1427 8246 37 0 1 chr1 110381114 110382103 -86813329 + L1Md_F2 LINE L1 5587 6574 -8 5 1427 789 241 62 12 chr1 110382103 110382146 -86813286 + L1_Mm LINE L1 5616 5671 -497 5 1427 1033 256 30 98 chr1 110382138 110382670 -86812762 - L1_Rod LINE L1 -1309 4538 4043 5 1427 897 284 14 0 chr1 110382663 110382948 -86812484 - L1_Rod LINE L1 -6511 661 373 5 1427 23 0 0 0 chr1 110383182 110383205 -86812227 + AT_rich Low_complexity Low_complexity 1 23 0 5 1427 450 0 0 0 chr1 110383955 110384005 -86811427 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1427 284 370 56 34 chr1 110384011 110384190 -86811242 - B4A SINE B4 -4 288 106 5 1427 297 89 0 0 chr1 110384502 110384547 -86810885 + (TATG)n Simple_repeat Simple_repeat 3 47 0 5 1427 468 35 0 0 chr1 110384552 110384610 -86810822 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 5 1427 1035 52 0 0 chr1 110384702 110384836 -86810596 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 5 1427 230 259 17 0 chr1 110385274 110385332 -86810100 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 1427 513 0 0 0 chr1 110385358 110385415 -86810017 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 1427 257 286 9 37 chr1 110385430 110385539 -86809893 + GA-rich Low_complexity Low_complexity 2 107 0 5 1427 3543 123 5 21 chr1 110386625 110387205 -86808227 - L1_Mus3 LINE L1 -1 6637 6067 5 1427 285 114 0 64 chr1 110387205 110387240 -86808192 + MTA_Mm LTR MaLR 13 47 -349 5 1427 1611 34 29 0 chr1 110387240 110387448 -86807984 + L1Md_F3 LINE L1 6370 6583 -1 5 1427 285 124 9 102 chr1 110387448 110387473 -86807959 + MTA_Mm LTR MaLR 48 68 -339 5 1427 2762 43 6 0 chr1 110387497 110387845 -86807587 + MTA_Mm LTR MaLR 47 396 0 5 1427 3027 129 20 25 chr1 110387845 110388609 -86806823 - L1_Mus3 LINE L1 -555 6083 5332 5 1427 22 56 0 0 chr1 110388827 110388863 -86806569 + AT_rich Low_complexity Low_complexity 1 36 0 5 1427 696 400 18 8 chr1 110389084 110389576 -86805856 - Lx8 LINE L1 -5 7468 6972 5 1427 243 254 0 0 chr1 110389612 110389675 -86805757 - L1M3 LINE L1 -564 5604 5542 5 1427 2937 264 107 73 chr1 110389950 110390646 -86804786 + RLTR22_Mur LTR ERVK 4 1101 -747 5 1427 4249 39 22 0 chr1 110390646 110391187 -86804245 + MT-int LTR MaLR 473 1025 -73 5 1427 2937 264 107 73 chr1 110391187 110391658 -86803774 + RLTR22_Mur LTR ERVK 1102 1848 0 5 1427 207 0 0 0 chr1 110391799 110391822 -86803610 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1427 450 0 0 0 chr1 110391823 110391873 -86803559 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1427 238 80 40 0 chr1 110391990 110392040 -86803392 + (TTTTTG)n Simple_repeat Simple_repeat 5 56 0 5 1427 1308 243 43 3 chr1 110392044 110392349 -86803083 + Lx6 LINE L1 7143 7459 -1 5 1427 387 0 0 0 chr1 110392475 110392518 -86802914 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1427 378 0 0 0 chr1 110392518 110392559 -86802873 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1427 1361 301 96 60 chr1 110392573 110393519 -86801913 + RMER13B LTR ERVK 30 899 -9 5 1427 1651 231 42 90 chr1 110393598 110394098 -86801334 + RLTR20C LTR ERVK 3 478 -56 5 1427 1172 356 43 4 chr1 110394352 110394882 -86800550 - Lx9 LINE L1 -651 6993 6443 5 1427 21 36 0 0 chr1 110395887 110395915 -86799517 + AT_rich Low_complexity Low_complexity 1 28 0 5 1427 21 57 0 0 chr1 110395978 110396013 -86799419 + AT_rich Low_complexity Low_complexity 1 35 0 5 1427 43 71 0 0 chr1 110396811 110396896 -86798536 + AT_rich Low_complexity Low_complexity 1 85 0 5 1427 23 54 0 0 chr1 110396943 110396980 -86798452 + AT_rich Low_complexity Low_complexity 1 37 0 5 1427 299 380 113 6 chr1 110397025 110397184 -86798248 + B4A SINE B4 39 214 -78 5 1427 1709 191 12 3 chr1 110397210 110397531 -86797901 + Lx4A LINE L1 6153 6476 -582 5 1427 2651 217 20 14 chr1 110397527 110398120 -86797312 + Lx3C LINE L1 5654 6250 -726 5 1427 198 71 0 0 chr1 110398699 110398727 -86796705 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1427 1215 269 70 24 chr1 110398861 110399231 -86796201 - Lx7 LINE L1 -281 7415 7029 5 1427 37 23 0 0 chr1 110399255 110399299 -86796133 + AT_rich Low_complexity Low_complexity 1 44 0 5 1427 711 241 0 29 chr1 110399412 110399549 -86795883 - B3 SINE B2 -81 135 3 5 1427 379 387 0 0 chr1 110399556 110399675 -86795757 - B4A SINE B4 -72 220 102 5 1427 208 260 27 0 chr1 110399725 110399798 -86795634 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 5 1427 1813 179 3 3 chr1 110400297 110400623 -86794809 - ORR1A2 LTR MaLR -1 326 1 5 1427 5081 142 18 4 chr1 110400623 110401471 -86793961 - ORR1A2-int LTR MaLR 0 1963 554 5 1427 3778 58 2 0 chr1 110401473 110401957 -86793475 - L1Md_F3 LINE L1 -893 4990 4506 5 1427 4293 60 0 0 chr1 110401956 110402493 -86792939 + L1Md_F3 LINE L1 5049 5585 -298 5 1427 8049 45 1 2 chr1 110402494 110403483 -86791949 + L1Md_F3 LINE L1 5587 6574 -10 5 1427 314 23 23 0 chr1 110403487 110403530 -86791902 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1427 4040 196 25 111 chr1 110403530 110404629 -86790803 - ORR1A3-int LTR MaLR -786 1006 2 5 1427 1729 189 0 25 chr1 110404634 110404960 -86790472 - ORR1A3 LTR MaLR -8 318 1 5 1427 1590 235 58 80 chr1 110405063 110405600 -86789832 + RLTR11A2 LTR ERVK 3 527 0 5 1427 473 270 23 86 chr1 110407023 110407197 -86788235 - RNLTR23 LTR ERVK 0 642 480 5 1427 630 0 0 0 chr1 110408033 110408103 -86787329 + (TTTTC)n Simple_repeat Simple_repeat 2 71 0 5 1427 264 59 0 0 chr1 110408466 110408500 -86786932 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1427 408 372 152 8 chr1 110408545 110408789 -86786643 - B4A SINE B4 -6 286 8 5 1427 12052 187 18 23 chr1 110408918 110412075 -86783357 - Lx2B LINE L1 -17 6983 3837 5 1427 450 0 0 0 chr1 110412075 110412125 -86783307 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1427 12052 202 7 21 chr1 110412125 110412657 -86782775 - Lx2B LINE L1 -2041 3836 3308 5 1427 318 26 0 0 chr1 110412661 110412700 -86782732 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1427 3861 176 25 1 chr1 110412707 110412870 -86782562 - L1VL4 LINE L1 -1915 1700 1531 5 1427 285 29 0 0 chr1 110412870 110412904 -86782528 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1427 3861 191 23 7 chr1 110412904 110413978 -86781454 - L1VL4 LINE L1 -2085 1530 443 5 1427 37810 31 0 0 chr1 110414523 110420711 -86774721 - L1Md_T LINE L1 0 6585 298 5 1427 902 149 0 7 chr1 110420825 110420967 -86774465 - B1_Mus1 SINE Alu -3 145 5 5 1427 198 0 0 0 chr1 110421527 110421549 -86773883 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1427 441 95 0 0 chr1 110422000 110422063 -86773369 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 5 1427 301 330 126 16 chr1 110422165 110422347 -86773085 + Lx9 LINE L1 6545 6746 -898 5 1427 1016 308 39 12 chr1 110422352 110422763 -86772669 + Lx9 LINE L1 6949 7370 -274 5 1427 21 36 0 0 chr1 110423033 110423061 -86772371 + AT_rich Low_complexity Low_complexity 1 28 0 5 1427 21 0 0 0 chr1 110423935 110423956 -86771476 + AT_rich Low_complexity Low_complexity 1 21 0 5 1427 296 127 18 0 chr1 110424656 110424711 -86770721 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1427 25 0 0 0 chr1 110425389 110425414 -86770018 + AT_rich Low_complexity Low_complexity 1 25 0 5 1427 2373 295 59 81 chr1 110425465 110426070 -86769362 - Lx5 LINE L1 0 7050 6453 5 1427 874 78 13 25 chr1 110426070 110426227 -86769205 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 5 1427 2373 295 63 75 chr1 110426227 110426675 -86768757 - Lx5 LINE L1 -598 6452 5983 5 1427 1478 218 32 11 chr1 110426667 110427015 -86768417 - Lx5 LINE L1 -162 5715 5361 5 1427 329 269 34 85 chr1 110427020 110427109 -86768323 + RMER20A LTR ERVK 6 98 -418 5 1427 540 0 0 0 chr1 110427109 110427169 -86768263 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1427 329 269 34 85 chr1 110427169 110427197 -86768235 + RMER20A LTR ERVK 99 117 -399 5 1427 1693 175 25 6 chr1 110427172 110427488 -86767944 - RMER6D LTR ERVK -398 322 1 5 1427 8405 246 96 26 chr1 110427488 110430836 -86764596 - Lx5 LINE L1 -1068 4812 1228 5 1427 372 97 0 0 chr1 110430836 110430898 -86764534 + (TATG)n Simple_repeat Simple_repeat 1 62 0 5 1427 616 219 21 90 chr1 110430898 110431097 -86764335 - Lx5 LINE L1 -6501 1227 1036 5 1427 24 32 0 0 chr1 110431401 110431432 -86764000 + AT_rich Low_complexity Low_complexity 1 31 0 5 1427 420 20 0 0 chr1 110433084 110433133 -86762299 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1427 507 107 0 0 chr1 110433133 110433217 -86762215 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1427 3715 141 29 8 chr1 110433632 110434252 -86761180 + Lx2 LINE L1 6361 6993 -4 5 1427 23 0 0 0 chr1 110434606 110434629 -86760803 + AT_rich Low_complexity Low_complexity 1 23 0 5 1427 399 41 0 0 chr1 110435120 110435169 -86760263 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1427 267 103 0 0 chr1 110435435 110435474 -86759958 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1427 423 0 0 0 chr1 110435808 110435855 -86759577 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1427 484 338 45 0 chr1 110435882 110436015 -86759417 + RSINE1 SINE B4 4 142 -23 5 1427 240 35 0 0 chr1 110436025 110436054 -86759378 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1427 23 33 0 0 chr1 110436061 110436091 -86759341 + AT_rich Low_complexity Low_complexity 1 30 0 5 1427 186 284 116 74 chr1 110436664 110436759 -86758673 - L3 LINE CR1 -4334 155 57 5 1427 14289 203 140 33 chr1 110438079 110443033 -86752399 + Lx2B LINE L1 817 6291 -709 5 1427 1555 149 51 4 chr1 110443042 110443318 -86752114 - RMER16 LTR ERVK -12 521 233 5 1427 4176 65 2 28 chr1 110443287 110443861 -86751571 + LTRIS2 LTR ERV1 6 564 0 5 1427 1664 126 38 0 chr1 110443861 110444123 -86751309 - RMER16 LTR ERVK -261 272 1 5 1427 2758 251 21 30 chr1 110444132 110444809 -86750623 + Lx2B LINE L1 6294 6964 -36 5 1427 189 0 0 0 chr1 110444813 110444834 -86750598 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5 1427 1847 250 89 58 chr1 110444878 110445073 -86750359 - Lx9 LINE L1 -636 7008 6810 5 1427 6040 100 11 36 chr1 110445073 110445998 -86749434 + RLTR13D6 LTR ERVK 1 902 0 5 1427 1847 250 89 58 chr1 110445998 110446439 -86748993 - Lx9 LINE L1 -835 6809 6352 5 1427 791 237 67 48 chr1 110446540 110446748 -86748684 + RMER19C LTR ERVK 347 558 -344 5 1427 831 231 46 26 chr1 110446728 110446923 -86748509 + RMER19C LTR ERVK 395 593 -18 5 1427 383 196 29 0 chr1 110446950 110447052 -86748380 + Lx4A LINE L1 6954 7058 0 5 1427 180 0 0 0 chr1 110447115 110447135 -86748297 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1427 569 225 14 61 chr1 110447143 110447290 -86748142 - B1_Mur3 SINE Alu 0 149 10 5 1427 180 77 0 0 chr1 110447643 110447669 -86747763 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1427 31009 58 11 62 chr1 110447684 110448653 -86746779 - L1Md_F3 LINE L1 -15 6569 5595 5 1427 2107 80 112 6 chr1 110448653 110448991 -86746441 - RLTR10 LTR ERVK -16 374 1 6 1427 31009 58 11 62 chr1 110448991 110453033 -86742399 - L1Md_F3 LINE L1 -15 5594 1525 5 1427 420 20 0 0 chr1 110453127 110453176 -86742256 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1427 24 96 0 0 chr1 110454510 110454583 -86740849 + AT_rich Low_complexity Low_complexity 1 73 0 6 1427 1041 313 166 42 chr1 110454718 110455212 -86740220 + MLT2B2 LTR ERVL 2 556 0 6 1427 291 141 0 0 chr1 110455802 110455866 -86739566 + (A)n Simple_repeat Simple_repeat 1 64 0 6 1427 197 33 0 32 chr1 110456978 110457009 -86738423 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 6 1427 194 399 20 34 chr1 110457044 110457192 -86738240 - MIR SINE MIR -71 191 46 6 1427 3108 195 26 5 chr1 110457258 110457315 -86738117 + Lx4B LINE L1 5230 5286 -600 6 1427 3965 140 0 17 chr1 110457315 110457946 -86737486 + Lx2A1 LINE L1 6389 7008 0 6 1427 4671 221 76 12 chr1 110457946 110459509 -86735923 + Lx4B LINE L1 5287 6971 -26 6 1427 2661 108 27 8 chr1 110459532 110459933 -86735499 - RLTR9E LTR ERVK 0 409 1 6 1427 866 171 11 0 chr1 110460050 110460225 -86735207 + CT-rich Low_complexity Low_complexity 3 179 0 6 1427 267 31 0 0 chr1 110460359 110460391 -86735041 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1427 216 97 0 0 chr1 110460835 110460866 -86734566 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1427 353 343 33 53 chr1 110461697 110461848 -86733584 - B1F SINE Alu 0 149 2 6 1427 306 0 0 0 chr1 110462014 110462048 -86733384 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1427 369 0 0 0 chr1 110462913 110462954 -86732478 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1427 1054 62 7 33 chr1 110463444 110463594 -86731838 + B1_Mm SINE Alu 1 146 -1 6 1427 1446 212 189 11 chr1 110463812 110464428 -86731004 + Lx3C LINE L1 6249 6974 -2 6 1427 1125 81 0 0 chr1 110464446 110464594 -86730838 + B1_Mus1 SINE Alu 1 148 0 6 1427 3750 109 13 4 chr1 110464643 110465192 -86730240 - L1_Mus1 LINE L1 -75 5808 5255 6 1427 5950 63 3 4 chr1 110465192 110465959 -86729473 + L1_Mus1 LINE L1 5801 6566 -1 6 1427 972 318 87 29 chr1 110466133 110466729 -86728703 - Lx7 LINE L1 -275 7421 6791 6 1427 1167 315 44 15 chr1 110466722 110467177 -86728255 - Lx7 LINE L1 -1039 6657 6190 6 1427 378 0 0 0 chr1 110467177 110467219 -86728213 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1427 22 80 0 0 chr1 110467290 110467340 -86728092 + AT_rich Low_complexity Low_complexity 1 50 0 6 1427 552 288 61 0 chr1 110468168 110468300 -86727132 + RSINE1 SINE B4 5 144 -21 6 1427 1907 216 200 70 chr1 110468375 110469164 -86726268 + RMER19B LTR ERVK 1 891 -11 6 1427 293 340 134 10 chr1 110469786 110469988 -86725444 - Lx8 LINE L1 -41 7432 7206 6 1427 243 88 0 0 chr1 110470297 110470331 -86725101 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1427 23 54 0 0 chr1 110471143 110471180 -86724252 + AT_rich Low_complexity Low_complexity 1 37 0 6 1427 480 264 152 0 chr1 110471195 110471320 -86724112 - B1_Mur4 SINE Alu 0 150 7 6 1427 436 362 7 0 chr1 110471422 110471563 -86723869 + RSINE1 SINE B4 3 144 -21 6 1427 1599 189 121 6 chr1 110472167 110472497 -86722935 + RLTR14 LTR ERV1 15 382 0 6 1427 22 35 0 0 chr1 110472718 110472747 -86722685 + AT_rich Low_complexity Low_complexity 1 29 0 6 1427 1356 250 94 11 chr1 110476206 110476566 -86718866 + MTC LTR MaLR 32 421 0 6 1427 440 338 34 48 chr1 110476566 110476923 -86718509 - Lx9 LINE L1 -412 7232 6881 6 1427 24 0 0 0 chr1 110477419 110477443 -86717989 + AT_rich Low_complexity Low_complexity 1 24 0 6 1427 446 277 5 60 chr1 110477878 110478104 -86717328 + Lx4B LINE L1 802 1003 -5981 6 1427 5344 106 18 28 chr1 110478104 110478920 -86716512 + RLTR13C2 LTR ERVK 1 808 0 6 1427 1287 235 18 8 chr1 110478920 110479479 -86715953 + Lx4B LINE L1 998 1564 -2350 6 1427 14077 169 52 10 chr1 110479482 110479657 -86715775 + Lx4B LINE L1 1876 2047 -3830 6 1427 315 0 0 0 chr1 110479657 110479692 -86715740 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1427 14077 169 52 10 chr1 110479692 110482506 -86712926 + Lx4B LINE L1 2048 4991 -886 6 1427 3979 81 0 0 chr1 110482505 110483024 -86712408 - L1Md_F2 LINE L1 -444 6138 5620 6 1427 2615 75 3 14 chr1 110483024 110483388 -86712044 + L1Md_F2 LINE L1 6223 6582 0 6 1427 4118 201 14 44 chr1 110483392 110484631 -86710801 + Lx4B LINE L1 4976 6183 -875 6 1427 2196 218 64 8 chr1 110484632 110485235 -86710197 + Lx4B LINE L1 6325 6974 -2 6 1427 180 0 0 0 chr1 110485754 110485774 -86709658 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1427 30 45 0 0 chr1 110486162 110486206 -86709226 + AT_rich Low_complexity Low_complexity 1 44 0 6 1427 602 307 84 51 chr1 110487123 110487412 -86708020 - MTE2a LTR MaLR -2 377 86 6 1427 234 0 0 0 chr1 110487637 110487663 -86707769 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1427 2099 62 0 0 chr1 110487666 110487926 -86707506 - L1Md_F3 LINE L1 -22 6562 6303 6 1427 23 0 0 0 chr1 110488159 110488182 -86707250 + AT_rich Low_complexity Low_complexity 1 23 0 6 1427 2004 119 234 33 chr1 110489237 110489863 -86705569 - RLTR22_Mur LTR ERVK -1295 553 1 6 1427 23 54 0 0 chr1 110490577 110490614 -86704818 + AT_rich Low_complexity Low_complexity 1 37 0 6 1427 224 163 20 0 chr1 110490930 110490979 -86704453 + A-rich Low_complexity Low_complexity 1 50 0 6 1427 873 149 243 9 chr1 110491081 110491291 -86704141 - RMER6D LTR ERVK -461 259 1 6 1427 2841 181 67 21 chr1 110491297 110491863 -86703569 - RMER6-int LTR ERVK -7 3170 2579 6 1427 275 279 0 0 chr1 110491863 110491924 -86703508 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 6 1427 281 125 0 20 chr1 110491924 110491973 -86703459 - RMER6-int LTR ERVK -660 2517 2470 6 1427 6992 194 19 9 chr1 110491971 110493415 -86702017 - RMER6-int LTR ERVK -1435 1742 284 6 178 360 266 102 70 chr1 110493561 110493747 -86701685 - Lx9 LINE L1 -306 7338 7147 6 1428 32077 110 31 27 chr1 110493734 110497845 -86697587 + L1Md_F2 LINE L1 217 4205 -1678 6 1428 2343 116 29 13 chr1 110497845 110498231 -86697201 + L1Md_F2 LINE L1 6189 6580 -2 6 1428 32077 83 11 7 chr1 110498231 110500000 -86695432 + L1Md_F2 LINE L1 4206 5999 -583 6 1428 3745 86 47 13 chr1 110500000 110500552 -86694880 + L1Md_F2 LINE L1 6000 6570 -12 1 1428 1131 253 29 9 chr1 110500552 110500867 -86694565 - Lx9 LINE L1 -461 7183 6863 2 1428 2075 308 61 43 chr1 110500862 110502463 -86692969 + L1_Rod LINE L1 1552 3180 -2667 3 1428 290 125 21 0 chr1 110502488 110502536 -86692896 + L1Md_A LINE L1 6274 6322 -260 4 1428 485 73 0 103 chr1 110502542 110502649 -86692783 + L1Md_A LINE L1 6475 6570 -12 4 1428 27 0 0 0 chr1 110503052 110503079 -86692353 + AT_rich Low_complexity Low_complexity 1 27 0 5 1428 25 31 0 0 chr1 110503746 110503778 -86691654 + AT_rich Low_complexity Low_complexity 1 32 0 6 1428 200 240 0 51 chr1 110503849 110503928 -86691504 + CT-rich Low_complexity Low_complexity 2 76 0 7 1428 558 54 0 0 chr1 110503939 110504013 -86691419 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 8 1428 735 307 34 8 chr1 110504110 110504376 -86691056 - Lx9 LINE L1 -267 7377 7105 9 1428 27 87 0 0 chr1 110504890 110504959 -86690473 + AT_rich Low_complexity Low_complexity 1 69 0 1 1428 548 272 22 0 chr1 110505393 110505529 -86689903 + B3 SINE B2 2 140 -76 1 1428 28 61 0 0 chr1 110505637 110505686 -86689746 + AT_rich Low_complexity Low_complexity 1 49 0 1 1428 384 304 37 67 chr1 110505740 110505874 -86689558 + RSINE1 SINE B4 4 133 -32 1 1428 249 146 0 0 chr1 110505879 110505927 -86689505 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1428 396 153 14 0 chr1 110506173 110506245 -86689187 - L1_Mm LINE L1 -412 5471 5399 1 1428 2500 190 30 30 chr1 110506423 110506954 -86688478 - L1_Mur2 LINE L1 -620 5257 4727 1 1428 987 17 0 0 chr1 110506954 110507071 -86688361 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 1 1428 1031 80 0 0 chr1 110507071 110507208 -86688224 - B1_Mus1 SINE Alu -2 146 10 1 1428 490 194 43 117 chr1 110507076 110507239 -86688193 - B4A SINE B4 -72 220 70 1 1428 409 255 26 96 chr1 110507104 110507260 -86688172 - MT2B LTR ERVL -337 264 120 2 1428 331 226 11 0 chr1 110507260 110507353 -86688079 - L1_Mur2 LINE L1 -1188 4689 4596 1 1428 576 0 0 0 chr1 110507988 110508052 -86687380 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1428 297 75 0 0 chr1 110508053 110508093 -86687339 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1428 873 312 91 7 chr1 110508113 110508465 -86686967 - MTD LTR MaLR -23 396 1 2 1428 231 36 0 0 chr1 110508732 110508760 -86686672 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1428 237 357 61 0 chr1 110510544 110510642 -86684790 + RSINE1 SINE B4 24 127 -38 2 1428 180 111 0 0 chr1 110510655 110510682 -86684750 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1428 376 293 51 17 chr1 110510901 110511019 -86684413 - MTEa LTR MaLR 0 379 258 2 1428 2520 195 6 46 chr1 110512249 110512753 -86682679 - Lx2B LINE L1 -8 6992 6509 2 1428 611 142 0 36 chr1 110512756 110512866 -86682566 + Lx2B LINE L1 6286 6391 -609 2 1428 230 39 57 38 chr1 110512866 110512919 -86682513 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 3 1428 382 291 35 38 chr1 110513350 110513639 -86681793 + L1_Mur3 LINE L1 889 1176 -6552 3 1428 29 78 0 0 chr1 110513685 110513749 -86681683 + AT_rich Low_complexity Low_complexity 1 64 0 3 1428 1606 43 0 24 chr1 110513749 110513962 -86681470 - L1Md_F2 LINE L1 -10 6572 6365 3 1428 2247 269 53 26 chr1 110513967 110514223 -86681209 + L1_Mur3 LINE L1 1278 1540 -4340 3 1428 411 21 0 0 chr1 110514223 110514271 -86681161 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1428 2247 269 53 26 chr1 110514271 110514901 -86680531 + L1_Mur3 LINE L1 1541 2188 -3692 3 1428 3105 169 32 9 chr1 110514892 110515039 -86680393 + Lx2 LINE L1 5302 5447 -436 3 1428 5584 40 0 3 chr1 110515039 110515715 -86679717 + L1Md_T LINE L1 5909 6582 0 3 1428 5854 159 59 2 chr1 110515715 110516844 -86678588 + Lx2 LINE L1 5448 6653 -344 3 1428 11471 91 25 25 chr1 110516844 110517363 -86678069 + Lx3_Mus LINE L1 4159 4680 -1206 3 1428 990 118 0 0 chr1 110517363 110517498 -86677934 + B1_Mus1 SINE Alu 1 135 -13 3 1428 689 61 10 0 chr1 110517501 110517600 -86677832 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 3 1428 11471 95 32 15 chr1 110517600 110519780 -86675652 + Lx3_Mus LINE L1 4681 6903 -106 3 1428 414 176 54 11 chr1 110519810 110519902 -86675530 - Lx7 LINE L1 -1439 6257 6162 4 1428 1898 258 7 34 chr1 110519903 110520393 -86675039 + L1_Mur3 LINE L1 5129 5607 -273 4 1428 1734 186 323 30 chr1 110520393 110520926 -86674506 - RMER6C LTR ERVK -1 689 1 4 1428 1898 258 7 34 chr1 110520926 110521020 -86674412 + L1_Mur3 LINE L1 5608 5697 -183 4 1428 35696 53 1 16 chr1 110521166 110526464 -86668968 + L1Md_A LINE L1 368 5586 -297 4 1428 8258 37 2 2 chr1 110526464 110527460 -86667972 + L1Md_A LINE L1 5587 6582 0 4 1428 21 57 0 0 chr1 110527822 110527857 -86667575 + AT_rich Low_complexity Low_complexity 1 35 0 4 1428 34 24 0 0 chr1 110528347 110528388 -86667044 + AT_rich Low_complexity Low_complexity 1 41 0 4 1428 284 282 176 0 chr1 110528447 110528532 -86666900 - B3A SINE B2 -98 100 1 4 1428 23 54 0 0 chr1 110528784 110528821 -86666611 + AT_rich Low_complexity Low_complexity 1 37 0 4 1428 962 151 220 8 chr1 110529194 110529435 -86665997 + Lx4B LINE L1 4475 4766 -1114 4 1428 1892 160 40 3 chr1 110529430 110529805 -86665627 + Lx4B LINE L1 4974 5362 -515 4 1428 6066 212 57 10 chr1 110529806 110531168 -86664264 + Lx4B LINE L1 5633 7058 0 4 1428 3342 260 87 10 chr1 110531165 110532577 -86662855 + Lx6 LINE L1 4755 6266 -1194 4 1428 1072 301 50 27 chr1 110532581 110533221 -86662211 + Lx6 LINE L1 6455 6886 -574 4 1428 536 64 10 31 chr1 110533231 110533328 -86662104 - L1Md_F2 LINE L1 0 6582 6488 5 1428 13531 123 14 21 chr1 110533328 110536215 -86659217 - L1Md_F LINE L1 -2802 3081 208 5 1428 248 286 26 43 chr1 110536233 110536350 -86659082 + L1MD1 LINE L1 6114 6228 -14 5 1428 21 0 0 0 chr1 110536386 110536407 -86659025 + AT_rich Low_complexity Low_complexity 1 21 0 5 1428 2616 227 64 40 chr1 110536539 110537388 -86658044 + MYSERV6-int LTR ERVK 7977 8845 -114 5 1428 2982 217 43 8 chr1 110537544 110538172 -86657260 - Lx LINE L1 0 6654 6005 5 1428 2058 94 3 13 chr1 110538191 110538494 -86656938 - L1Md_F2 LINE L1 0 6582 6283 5 1428 1405 175 33 4 chr1 110538495 110538765 -86656667 - L1_Mur2 LINE L1 -648 5229 4952 5 1428 534 143 22 0 chr1 110538766 110538857 -86656575 + L1_Mm LINE L1 4296 4388 -1495 5 1428 634 163 101 0 chr1 110538864 110538966 -86656466 - L1_Mur2 LINE L1 -1137 4740 4638 5 1428 281 47 23 0 chr1 110538966 110539009 -86656423 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 5 1428 634 163 101 0 chr1 110539009 110539035 -86656397 - L1_Mur2 LINE L1 -1240 4637 4600 5 1428 1077 126 23 0 chr1 110539039 110539213 -86656219 + L1_Mm LINE L1 4407 4584 -1299 6 1428 1539 217 90 97 chr1 110539232 110539686 -86655746 + RMER6B LTR ERVK 1 451 -10 6 1428 273 98 0 0 chr1 110539695 110539736 -86655696 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1428 1910 242 36 20 chr1 110539745 110540208 -86655224 - MT2A LTR ERVL -49 552 2 6 1428 263 28 28 0 chr1 110540273 110540309 -86655123 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 6 1428 310 266 116 48 chr1 110540454 110540600 -86654832 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1428 1284 89 0 0 chr1 110540606 110540786 -86654646 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1428 207 0 0 0 chr1 110540902 110540925 -86654507 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 1428 36 40 0 0 chr1 110541017 110541067 -86654365 + AT_rich Low_complexity Low_complexity 1 50 0 6 1428 476 296 102 21 chr1 110541139 110541374 -86654058 + Lx8 LINE L1 6891 7144 -329 6 1428 300 312 0 0 chr1 110541380 110541460 -86653972 + B3A SINE B2 2 81 -117 7 1428 270 0 0 0 chr1 110541540 110541570 -86653862 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1428 632 115 0 8 chr1 110541592 110541715 -86653717 + (TCTA)n Simple_repeat Simple_repeat 1 122 0 7 1428 285 29 0 0 chr1 110542015 110542049 -86653383 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1428 564 29 0 0 chr1 110542201 110542271 -86653161 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1428 4799 126 6 17 chr1 110542271 110543737 -86651695 - L1Md_A LINE L1 -4008 1875 442 7 1428 3711 236 207 20 chr1 110543738 110543807 -86651625 - L1_Mur1 LINE L1 -2148 3735 3667 7 1428 560 40 13 0 chr1 110543807 110543882 -86651550 + (TTTA)n Simple_repeat Simple_repeat 3 78 0 7 1428 5785 167 89 21 chr1 110543882 110544844 -86650588 - L1_Mur1 LINE L1 -2217 3666 2470 7 1428 1108 82 7 0 chr1 110544844 110544990 -86650442 + B1_Mus2 SINE Alu 1 147 0 7 1428 5785 147 55 21 chr1 110544990 110545358 -86650074 - L1_Mur1 LINE L1 -3414 2472 2081 7 1428 537 58 0 0 chr1 110545358 110545427 -86650005 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 7 1428 375 169 0 40 chr1 110545428 110545502 -86649930 - L1_Mur1 LINE L1 -3889 1997 1927 7 1428 4717 164 162 2 chr1 110545532 110546511 -86648921 - L1_Mur1 LINE L1 -5640 1344 209 7 1428 441 0 0 0 chr1 110547284 110547333 -86648099 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1428 1154 297 77 63 chr1 110547840 110548567 -86646865 - Lx9 LINE L1 0 7644 6908 8 1428 1480 231 93 6 chr1 110548575 110548928 -86646504 - ORR1C2 LTR MaLR 0 384 1 8 1428 1593 298 28 26 chr1 110548960 110549467 -86645965 - Lx9 LINE L1 -796 6848 6341 8 1428 738 284 111 59 chr1 110549701 110550241 -86645191 - Lx9 LINE L1 -1670 5974 5381 8 1428 1875 259 44 106 chr1 110550232 110551191 -86644241 + L1_Rod LINE L1 4151 5044 -803 8 1428 1338 94 5 15 chr1 110551191 110551386 -86644046 + B2_Mm1a SINE B2 1 193 0 8 1428 1875 265 44 97 chr1 110551386 110551600 -86643832 + L1_Rod LINE L1 5045 5327 -819 8 1428 1547 266 14 44 chr1 110553429 110553858 -86641574 + Lx7 LINE L1 6943 7358 -338 8 1428 25 0 0 0 chr1 110553901 110553926 -86641506 + AT_rich Low_complexity Low_complexity 1 25 0 8 1428 2247 102 12 9 chr1 110553936 110554274 -86641158 - Lx3_Mus LINE L1 -1084 5925 5587 8 1428 3788 226 34 44 chr1 110554412 110555323 -86640109 + RMER13B LTR ERVK 1 902 -6 8 1428 984 308 50 75 chr1 110555439 110555854 -86639578 + Lx7 LINE L1 6729 7133 -563 8 1428 1803 226 33 150 chr1 110555854 110556546 -86638886 - RMER19C LTR ERVK 0 611 1 9 1428 1007 308 50 75 chr1 110556546 110556652 -86638780 + Lx7 LINE L1 7134 7237 -459 8 1428 233 208 0 0 chr1 110556667 110556720 -86638712 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 9 1428 641 272 65 4 chr1 110557672 110557919 -86637513 - Lx9 LINE L1 -8 7636 7375 9 1428 259 227 22 22 chr1 110558197 110558287 -86637145 + Lx9 LINE L1 7548 7637 -7 9 1428 975 279 37 26 chr1 110558298 110558570 -86636862 - Lx6 LINE L1 -169 7291 7017 9 1428 1531 363 59 40 chr1 110558824 110559099 -86636333 - Lx8 LINE L1 -450 7023 6755 9 1428 3118 55 3 0 chr1 110559099 110559483 -86635949 - IAPEY_LTR LTR ERVK 0 385 1 9 1428 1531 363 59 40 chr1 110559483 110560328 -86635104 - Lx8 LINE L1 -719 6754 5882 9 1428 328 125 31 0 chr1 110560329 110560393 -86635039 + GA-rich Low_complexity Low_complexity 2 67 0 9 1428 560 376 60 4 chr1 110561040 110561288 -86634144 + B4A SINE B4 25 286 -6 9 1428 1103 75 7 0 chr1 110562129 110562275 -86633157 - B1_Mus1 SINE Alu 0 148 2 9 1428 474 103 0 0 chr1 110562442 110562510 -86632922 - Lx4B LINE L1 -342 6716 6649 1 1428 1680 169 18 30 chr1 110562511 110562846 -86632586 + Lx4A LINE L1 6728 7058 0 1 1428 1459 340 74 28 chr1 110563239 110564169 -86631263 + Lx8 LINE L1 6134 7106 -367 1 1428 905 319 74 35 chr1 110564173 110564550 -86630882 - MTD LTR MaLR 0 419 28 1 1428 249 434 5 11 chr1 110564564 110564748 -86630684 + Lx8 LINE L1 7105 7287 -186 1 1428 527 285 12 31 chr1 110564973 110565136 -86630296 - Lx6 LINE L1 -92 7368 7209 1 1428 386 284 63 0 chr1 110565170 110565297 -86630135 - Lx6 LINE L1 -658 6802 6668 1 1428 3051 305 77 8 chr1 110565334 110566340 -86629092 - Lx6 LINE L1 -291 7169 6095 1 1428 229 322 0 0 chr1 110568210 110568269 -86627163 + B4A SINE B4 4 62 -230 1 1428 3889 223 40 35 chr1 110568785 110569886 -86625546 + Lx5 LINE L1 3921 5026 -854 1 1428 2192 274 171 33 chr1 110569885 110571236 -86624196 + Lx5 LINE L1 5536 7050 0 1 1428 426 223 11 67 chr1 110571257 110571435 -86623997 - Lx9 LINE L1 0 7644 7477 1 1428 445 257 14 27 chr1 110571446 110571594 -86623838 - Lx9 LINE L1 -127 7517 7372 1 1428 230 286 0 31 chr1 110571612 110571677 -86623755 - Lx9 LINE L1 -324 7320 7258 1 1428 412 303 185 18 chr1 110572741 110573022 -86622410 - L1_Mur3 LINE L1 -6557 1155 828 1 1428 936 0 0 0 chr1 110573219 110573323 -86622109 + (GAGAA)n Simple_repeat Simple_repeat 4 107 0 1 1428 260 312 80 59 chr1 110573449 110573687 -86621745 - L1_Mur3 LINE L1 -6912 800 558 1 1428 201 139 47 0 chr1 110573919 110573962 -86621470 + (TTTAA)n Simple_repeat Simple_repeat 4 48 0 1 1428 448 300 50 11 chr1 110574547 110574729 -86620703 + Lx7 LINE L1 6070 6258 -1438 1 1428 1086 350 70 26 chr1 110574763 110575561 -86619871 + Lx7 LINE L1 6476 7308 -388 1 1428 495 48 0 0 chr1 110575569 110575631 -86619801 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 1428 3452 84 40 2 chr1 110575796 110576294 -86619138 - L1_Mus3 LINE L1 -4 6634 6118 1 1428 2949 88 17 0 chr1 110576294 110576701 -86618731 + L1_Mus3 LINE L1 5696 6109 -529 1 1428 401 230 11 0 chr1 110576803 110576890 -86618542 + Lx3B LINE L1 674 761 -6223 1 1428 5401 141 14 4 chr1 110576932 110577820 -86617612 + Lx3B LINE L1 5645 6537 -436 1 1428 34 24 0 0 chr1 110577843 110577884 -86617548 + AT_rich Low_complexity Low_complexity 1 41 0 1 1428 275 354 70 4 chr1 110578347 110578574 -86616858 - L1MC1 LINE L1 -141 6192 5951 1 1428 315 0 0 0 chr1 110578926 110578961 -86616471 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1428 333 323 44 49 chr1 110578989 110579437 -86615995 - L1MA4 LINE L1 -424 5879 5438 1 1428 441 0 0 0 chr1 110579446 110579495 -86615937 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1428 515 333 35 54 chr1 110579523 110579726 -86615706 - ID_B1 SINE B4 0 224 26 1 1428 270 0 0 0 chr1 110580895 110580925 -86614507 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1428 459 0 0 0 chr1 110582872 110582923 -86612509 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1428 630 0 0 0 chr1 110582923 110582992 -86612440 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1428 21 57 0 0 chr1 110583600 110583635 -86611797 + AT_rich Low_complexity Low_complexity 1 35 0 1 1428 21 0 0 0 chr1 110584527 110584548 -86610884 + AT_rich Low_complexity Low_complexity 1 21 0 1 1428 489 185 24 32 chr1 110584829 110584952 -86610480 + RMER3D-int LTR ERVK 1032 1153 -1689 1 1428 255 200 13 39 chr1 110584956 110585034 -86610398 + T-rich Low_complexity Low_complexity 3 78 0 1 1428 8204 30 1 0 chr1 110585089 110586432 -86609000 - L1Md_T LINE L1 0 6582 5253 1 1428 7844 49 1 0 chr1 110586433 110587530 -86607902 - L1Md_F2 LINE L1 -25 6557 5459 1 1428 867 171 44 0 chr1 110587572 110587730 -86607702 + RMER3D-int LTR ERVK 1219 1383 -1459 1 1428 4912 188 63 44 chr1 110587742 110589017 -86606415 + RMER3D-int LTR ERVK 1543 2842 0 1 1428 2954 189 51 7 chr1 110589040 110589610 -86605822 + RLTR17 LTR ERVK 98 692 0 1 1428 3388 264 128 43 chr1 110589661 110590716 -86604716 + L1_Rod LINE L1 2563 3661 -2186 1 1428 410 0 20 0 chr1 110590716 110590766 -86604666 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1428 3388 264 128 43 chr1 110590766 110591766 -86603666 + L1_Rod LINE L1 3662 4792 -1055 1 1428 4378 69 2 23 chr1 110591768 110592574 -86602858 + L1Md_F LINE L1 553 1388 -4498 1 1428 260 208 0 0 chr1 110592686 110592739 -86602693 + Lx9 LINE L1 7132 7184 -460 1 1428 17385 153 15 16 chr1 110592733 110595255 -86600177 + L1_Mus4 LINE L1 2746 5275 -608 1 1428 2631 73 16 8 chr1 110595255 110595628 -86599804 + L1Md_F2 LINE L1 6207 6582 0 1 1428 17385 141 23 12 chr1 110595628 110596848 -86598584 + L1_Mus4 LINE L1 5276 6566 -1 1 1428 1005 157 124 0 chr1 110596870 110597121 -86598311 + L1_Mus3 LINE L1 6317 6475 -163 1 1428 900 212 59 0 chr1 110599330 110599552 -86595880 - L1_Mur2 LINE L1 -5962 750 516 1 1428 21 36 0 0 chr1 110601138 110601166 -86594266 + AT_rich Low_complexity Low_complexity 1 28 0 1 1428 329 275 8 0 chr1 110601181 110601301 -86594131 - Lx9 LINE L1 -22 7622 7502 1 1428 423 0 0 0 chr1 110601605 110601652 -86593780 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1428 662 339 57 31 chr1 110601869 110602219 -86593213 + MTE2b LTR MaLR 3 361 -18 1 1428 718 86 224 0 chr1 110602801 110602917 -86592515 + B1_Mus2 SINE Alu 1 142 -5 1 1428 380 55 0 18 chr1 110602917 110602973 -86592459 + (CAAAA)n Simple_repeat Simple_repeat 4 58 0 1 1428 491 349 34 39 chr1 110603891 110604097 -86591335 - ID_B1 SINE B4 -3 221 17 1 1428 771 331 53 68 chr1 110604280 110604841 -86590591 - Lx8 LINE L1 -362 7111 6559 1 1428 240 324 80 44 chr1 110604905 110605154 -86590278 + Lx8 LINE L1 7204 7461 -12 1 1428 580 124 292 0 chr1 110605165 110605278 -86590154 - B1_Mus1 SINE Alu 0 148 3 1 1428 29 0 0 0 chr1 110605288 110605317 -86590115 + AT_rich Low_complexity Low_complexity 1 29 0 1 1428 2537 145 43 2 chr1 110605325 110605768 -86589664 - Lx3A LINE L1 -1 6980 6520 1 1428 234 0 0 0 chr1 110606665 110606691 -86588741 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1428 542 292 105 34 chr1 110607317 110607553 -86587879 + MTD LTR MaLR 1 251 -168 1 1428 200 152 12 48 chr1 110607693 110607776 -86587656 + A-rich Low_complexity Low_complexity 3 82 0 1 1428 799 104 64 0 chr1 110607798 110607923 -86587509 + B1_Mus1 SINE Alu 5 137 -11 1 1428 479 0 49 0 chr1 110607923 110607984 -86587448 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1428 833 179 0 32 chr1 110608463 110608648 -86586784 - Lx3A LINE L1 0 6981 6803 1 1428 7435 112 11 132 chr1 110608658 110609519 -86585913 - L1_Mur1 LINE L1 -226 5660 4930 1 1428 832 125 81 0 chr1 110609519 110609655 -86585777 - B1_Mm SINE Alu 0 147 1 1 1428 7435 112 11 132 chr1 110609655 110610305 -86585127 - L1_Mur1 LINE L1 -957 4929 4332 1 1428 2606 88 21 13 chr1 110610311 110610691 -86584741 - IAPEY_LTR LTR ERVK -2 383 1 1 1428 907 58 17 0 chr1 110610691 110610811 -86584621 - IAPEY3-int LTR ERVK 0 7680 7559 1 1428 1065 131 6 0 chr1 110610811 110610987 -86584445 - L1_Mur1 LINE L1 -2698 3188 3012 1 1428 3729 142 14 3 chr1 110610988 110611636 -86583796 + L1_Mur1 LINE L1 1303 1957 -3929 1 1428 252 0 0 0 chr1 110612035 110612063 -86583369 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1428 26 0 0 0 chr1 110612144 110612170 -86583262 + AT_rich Low_complexity Low_complexity 1 26 0 1 1428 850 235 157 54 chr1 110612905 110613274 -86582158 + RMER4B LTR ERVK 1 407 -178 1 1428 2673 221 62 2 chr1 110613678 110614240 -86581192 - RMER19C LTR ERVK -15 596 1 1 1428 339 198 23 133 chr1 110614240 110614367 -86581065 + RLTR12B LTR ERVK 181 293 -235 1 1428 251 333 60 44 chr1 110614403 110614585 -86580847 + RLTR12B LTR ERVK 302 486 -42 1 1428 315 219 0 88 chr1 110614652 110614732 -86580700 + RMER4B LTR ERVK 465 537 -48 1 1428 288 331 77 28 chr1 110615020 110615163 -86580269 - RMER15 LTR ERVL -4 571 422 1 1428 971 311 31 82 chr1 110615214 110615628 -86579804 + MTD LTR MaLR 27 419 0 1 1428 21 36 0 0 chr1 110616094 110616122 -86579310 + AT_rich Low_complexity Low_complexity 1 28 0 1 1428 6387 73 16 8 chr1 110616492 110617352 -86578080 + L1Md_F2 LINE L1 5713 6579 -3 1 1428 246 348 30 24 chr1 110617439 110617607 -86577825 - L1M2 LINE L1 -1280 4863 4695 1 1428 314 302 8 49 chr1 110617679 110617801 -86577631 - MLT1A1 LTR MaLR -6 402 286 1 1428 2387 100 3 22 chr1 110617952 110618319 -86577113 - L1Md_F2 LINE L1 0 6582 6223 1 1428 628 334 79 74 chr1 110618764 110619158 -86576274 - MTC LTR MaLR 0 421 26 1 1428 7055 138 14 1 chr1 110619196 110620729 -86574703 - Lx LINE L1 -7 6647 5099 1 1428 676 293 39 6 chr1 110620743 110620925 -86574507 - MTEa LTR MaLR -185 194 7 1 1428 560 277 130 10 chr1 110620922 110621130 -86574302 - MTEa-int LTR MaLR -5 1575 1343 1 1428 273 261 145 0 chr1 110621178 110621247 -86574185 + B3 SINE B2 1 79 -137 1 1428 550 178 10 0 chr1 110621247 110621348 -86574084 + L1_Mur1 LINE L1 5015 5116 -770 1 1428 3188 188 20 30 chr1 110621376 110622088 -86573344 - Lx LINE L1 -770 5113 4409 1 1428 475 175 0 0 chr1 110622224 110622304 -86573128 - BGLII_A LTR ERVK 0 445 366 1 1428 244 238 63 0 chr1 110622313 110622376 -86573056 - Lx8 LINE L1 -612 6861 6795 1 1428 261 307 36 78 chr1 110622547 110622817 -86572615 + L1M2 LINE L1 5283 5544 -747 1 1428 241 326 86 39 chr1 110622925 110623158 -86572274 + L1MB1 LINE L1 5684 5927 -262 1 1428 339 25 0 0 chr1 110624220 110624260 -86571172 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1428 399 21 0 0 chr1 110624260 110624307 -86571125 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 178 12394 179 56 15 chr1 110624544 110628035 -86567397 + L1_Mur1 LINE L1 80 3723 -2163 1 1429 328 202 24 142 chr1 110628035 110628162 -86567270 + MT2B LTR ERVL 153 264 -337 1 1429 918 135 0 28 chr1 110628051 110628196 -86567236 + B1_Mus1 SINE Alu 7 147 -1 1 1429 285 119 43 21 chr1 110628196 110628290 -86567142 + (CAAA)n Simple_repeat Simple_repeat 1 96 0 1 1429 1980 159 3 3 chr1 110628295 110628649 -86566783 + L1_Mur1 LINE L1 3720 4073 -1813 1 1429 36366 50 12 4 chr1 110629827 110635250 -86560182 + L1Md_T LINE L1 154 5586 -297 1 1429 7952 59 0 0 chr1 110635250 110636277 -86559155 + L1Md_T LINE L1 5587 6582 0 1 1429 33 43 0 0 chr1 110636320 110636367 -86559065 + AT_rich Low_complexity Low_complexity 1 47 0 1 1429 1822 140 9 36 chr1 110636919 110637253 -86558179 - L1_Mur2 LINE L1 -1956 3921 3597 1 1429 613 308 0 11 chr1 110637365 110637539 -86557893 - Lx6 LINE L1 -27 7433 7262 1 1429 550 297 22 6 chr1 110637617 110637855 -86557577 - Lx6 LINE L1 -560 6900 6455 1 1429 359 342 103 21 chr1 110638635 110638829 -86556603 + B4A SINE B4 11 220 -72 1 1429 248 324 15 0 chr1 110640667 110640735 -86554697 + B3A SINE B2 5 73 -125 1 1429 2375 70 0 0 chr1 110640831 110641146 -86554286 - L1Md_F2 LINE L1 -2 6580 6266 1 1429 187 308 17 108 chr1 110641461 110641581 -86553851 + MIRb SINE MIR 15 123 -145 1 1429 215 127 55 0 chr1 110643690 110643745 -86551687 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 1 1429 1107 69 7 0 chr1 110643745 110643890 -86551542 - B1_Mus1 SINE Alu 0 148 3 1 1429 279 0 0 0 chr1 110644019 110644050 -86551382 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1429 613 31 0 0 chr1 110644050 110644132 -86551300 - B1_Mm SINE Alu -9 140 59 2 1429 693 326 87 8 chr1 110644278 110644671 -86550761 - Lx8 LINE L1 -451 7022 6599 2 1429 1693 62 4 4 chr1 110644961 110645188 -86550244 - L1Md_F2 LINE L1 0 6582 6356 2 1429 501 308 0 0 chr1 110645964 110646110 -86549322 - Lx9 LINE L1 -254 7390 7245 2 1429 305 203 27 0 chr1 110646108 110646182 -86549250 + Lx9 LINE L1 7400 7475 -169 2 1429 396 0 0 0 chr1 110646182 110646226 -86549206 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1429 213 39 0 0 chr1 110646347 110646373 -86549059 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 2 1429 21 0 0 0 chr1 110646530 110646551 -86548881 + AT_rich Low_complexity Low_complexity 1 21 0 2 1429 4817 139 36 0 chr1 110646603 110647379 -86548053 + Lx3B LINE L1 6164 6967 -6 2 1429 23 0 0 0 chr1 110647388 110647411 -86548021 + AT_rich Low_complexity Low_complexity 1 23 0 2 1429 21 57 0 0 chr1 110647443 110647478 -86547954 + AT_rich Low_complexity Low_complexity 1 35 0 2 1429 229 200 51 39 chr1 110648767 110648845 -86546587 - L1MA9 LINE L1 -238 6074 5996 2 1429 182 389 30 41 chr1 110649169 110649338 -86546094 + MIRb SINE MIR 88 254 -14 2 1429 1034 289 76 35 chr1 110650552 110650881 -86544551 + Lx8 LINE L1 6359 6707 -766 2 1429 222 37 0 0 chr1 110650881 110650908 -86544524 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1429 1034 289 76 35 chr1 110650908 110651041 -86544391 + Lx8 LINE L1 6708 6839 -634 2 1429 584 228 17 89 chr1 110651029 110651230 -86544202 + Lx3C LINE L1 6358 6545 -431 2 1429 375 132 0 0 chr1 110651230 110651298 -86544134 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 2 1429 23 0 0 0 chr1 110651959 110651982 -86543450 + AT_rich Low_complexity Low_complexity 1 23 0 2 1429 366 107 0 0 chr1 110653201 110653257 -86542175 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1429 25 0 0 0 chr1 110653567 110653592 -86541840 + AT_rich Low_complexity Low_complexity 1 25 0 2 1429 28 29 0 0 chr1 110653681 110653716 -86541716 + AT_rich Low_complexity Low_complexity 1 35 0 2 1429 406 237 16 60 chr1 110653716 110653900 -86541532 - RMER17C LTR ERVK -138 272 97 2 1429 853 313 55 104 chr1 110654727 110655237 -86540195 + RMER15 LTR ERVL 91 575 0 2 1429 2158 99 6 30 chr1 110655466 110655800 -86539632 - L1_Mus3 LINE L1 0 6638 6313 2 1429 11560 198 26 21 chr1 110655803 110658523 -86536909 - Lx2B LINE L1 -3 6997 4294 2 1429 228 35 0 0 chr1 110658523 110658552 -86536880 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1429 11560 194 27 14 chr1 110658552 110659462 -86535970 - Lx2B LINE L1 -1584 4293 3354 2 1429 25 75 0 0 chr1 110660455 110660508 -86534924 + AT_rich Low_complexity Low_complexity 1 53 0 2 1429 26 30 0 0 chr1 110661043 110661076 -86534356 + AT_rich Low_complexity Low_complexity 1 33 0 2 1429 213 278 17 25 chr1 110661114 110661232 -86534200 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 1429 198 0 0 0 chr1 110661870 110661892 -86533540 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1429 649 88 0 19 chr1 110661892 110661996 -86533436 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1429 1834 286 75 19 chr1 110662666 110663417 -86532015 - Lx7 LINE L1 -1261 6435 5643 2 1429 6547 169 90 10 chr1 110663417 110664951 -86530481 + Lx2 LINE L1 5363 6997 0 2 1429 1201 217 90 45 chr1 110664978 110665592 -86529840 + Lx LINE L1 6024 6650 -4 2 1429 957 289 0 28 chr1 110665609 110665929 -86529503 - Lx7 LINE L1 -245 5635 5325 2 1429 1260 86 0 0 chr1 110666328 110666503 -86528929 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 1429 234 244 33 42 chr1 110666564 110666684 -86528748 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 2 1429 24 0 0 0 chr1 110666684 110666708 -86528724 + AT_rich Low_complexity Low_complexity 1 24 0 2 1429 24 0 0 0 chr1 110669470 110669494 -86525938 + AT_rich Low_complexity Low_complexity 1 24 0 2 1429 240 152 61 37 chr1 110670797 110670879 -86524553 + (TTAAA)n Simple_repeat Simple_repeat 5 88 0 2 1429 243 0 0 0 chr1 110671443 110671470 -86523962 + (TAAG)n Simple_repeat Simple_repeat 4 30 0 2 1429 261 0 0 0 chr1 110671470 110671498 -86523934 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 1429 2443 141 2 24 chr1 110671864 110672277 -86523155 - L1_Mur1 LINE L1 -200 5686 5283 2 1429 8531 144 8 9 chr1 110672264 110673668 -86521764 - Lx2 LINE L1 0 6997 5596 2 1429 4201 132 18 4 chr1 110673695 110674373 -86521059 + Lx3A LINE L1 6290 6976 -5 2 1429 1220 74 6 3 chr1 110674426 110674737 -86520695 + (GAA)n Simple_repeat Simple_repeat 1 311 0 2 1429 1614 22 0 0 chr1 110674775 110674958 -86520474 + B2_Mm1a SINE B2 2 184 -9 2 1429 23 0 0 0 chr1 110674958 110674981 -86520451 + AT_rich Low_complexity Low_complexity 1 23 0 2 1429 222 105 0 0 chr1 110675208 110675246 -86520186 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1429 344 152 15 0 chr1 110676188 110676254 -86519178 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1429 26 74 0 0 chr1 110676874 110676928 -86518504 + AT_rich Low_complexity Low_complexity 1 54 0 2 1429 756 155 231 68 chr1 110676928 110677149 -86518283 - RMER6C LTR ERVK -433 257 1 2 1429 3832 32 0 0 chr1 110677236 110677698 -86517734 - L1_Mm LINE L1 -3262 2621 2160 2 1429 25355 23 1 0 chr1 110677696 110680673 -86514759 + L1_Mm LINE L1 2610 5586 -297 2 1429 8288 36 1 0 chr1 110680673 110681668 -86513764 + L1Md_T LINE L1 5587 6582 0 2 1429 1035 291 8 0 chr1 110681671 110681782 -86513650 - Lx5 LINE L1 -249 6801 6691 2 1429 264 30 0 0 chr1 110681782 110681815 -86513617 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1429 1035 291 8 0 chr1 110681815 110681954 -86513478 - Lx5 LINE L1 -360 6690 6550 2 1429 223 346 48 55 chr1 110681975 110682140 -86513292 - B3 SINE B2 0 216 53 2 1429 3684 74 30 0 chr1 110682140 110682643 -86512789 - L1Md_F2 LINE L1 -300 5583 5066 2 1429 7498 65 7 2 chr1 110682647 110683625 -86511807 + L1Md_F2 LINE L1 5588 6570 -12 2 1429 288 222 45 45 chr1 110683757 110683823 -86511609 - B2_Mm2 SINE B2 -127 68 3 2 1429 971 222 155 22 chr1 110684508 110684538 -86510894 - RMER6C LTR ERVK 0 690 661 2 1429 3154 37 3 0 chr1 110684538 110684920 -86510512 - L1Md_A LINE L1 -3 6579 6197 2 1429 3582 74 0 11 chr1 110684925 110685391 -86510041 - L1_Mus1 LINE L1 -1 6566 6106 2 1429 971 222 155 22 chr1 110685391 110685635 -86509797 - RMER6C LTR ERVK -33 657 378 2 1429 297 0 0 0 chr1 110685635 110685668 -86509764 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1429 468 0 0 0 chr1 110685668 110685719 -86509713 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1429 971 222 155 22 chr1 110685719 110685758 -86509674 - RMER6C LTR ERVK -313 377 327 2 1429 402 20 0 0 chr1 110686498 110686516 -86508916 + (T)n Simple_repeat Simple_repeat 1 18 0 2 1429 1047 70 42 0 chr1 110686516 110686658 -86508774 - B1_Mus1 SINE Alu 0 148 1 2 1429 402 20 0 0 chr1 110686658 110686688 -86508744 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1429 24 32 0 0 chr1 110686754 110686785 -86508647 + AT_rich Low_complexity Low_complexity 1 31 0 2 1429 684 316 20 5 chr1 110688382 110688579 -86506853 - B4 SINE B4 -87 205 6 2 1429 3635 39 0 0 chr1 110689610 110690046 -86505386 - L1Md_T LINE L1 0 6582 6147 2 1429 398 252 0 0 chr1 110691000 110691099 -86504333 - L1_Mur3 LINE L1 -377 5503 5405 2 1429 247 42 0 78 chr1 110691145 110691196 -86504236 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 2 1429 804 158 22 0 chr1 110691196 110691335 -86504097 - B1_Mus1 SINE Alu 0 148 7 2 1429 662 93 140 0 chr1 110691320 110691427 -86504005 + B1_Mus1 SINE Alu 18 139 -9 2 1429 180 0 0 0 chr1 110691427 110691447 -86503985 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1429 2297 210 82 37 chr1 110691450 110692157 -86503275 - L1_Mur3 LINE L1 -480 5400 4662 2 1429 1125 118 0 0 chr1 110692163 110692341 -86503091 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 1429 766 78 0 96 chr1 110692343 110692542 -86502890 + CT-rich Low_complexity Low_complexity 1 180 0 2 1429 747 108 0 0 chr1 110692542 110692653 -86502779 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 2 1429 489 133 0 28 chr1 110692653 110692749 -86502683 + CT-rich Low_complexity Low_complexity 4 96 0 2 1429 377 0 42 0 chr1 110692758 110692806 -86502626 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 2 1429 775 214 93 5 chr1 110692824 110693017 -86502415 - L1_Mur3 LINE L1 -1251 4629 4420 2 1429 1038 58 0 7 chr1 110693047 110693186 -86502246 - B1_Mus1 SINE Alu -3 145 8 2 1429 391 214 43 106 chr1 110693071 110693212 -86502220 - MT2B LTR ERVL -323 278 147 2 1429 2254 213 40 33 chr1 110693215 110693845 -86501587 - L1_Mur3 LINE L1 -1469 4411 3778 2 1429 584 186 34 0 chr1 110693843 110693961 -86501471 - L1_Mur3 LINE L1 -2254 3626 3505 2 1429 1092 283 7 35 chr1 110693964 110694246 -86501186 - Lx5 LINE L1 -8 7042 6769 2 1429 747 167 13 6 chr1 110694258 110694415 -86501017 - L1_Mur3 LINE L1 -2415 3465 3308 2 1429 2835 273 56 19 chr1 110694397 110695419 -86500013 - L1_Mur3 LINE L1 -6607 1121 62 2 1429 24 0 0 0 chr1 110695699 110695723 -86499709 + AT_rich Low_complexity Low_complexity 1 24 0 2 1429 1493 198 136 3 chr1 110698132 110698471 -86496961 + ORR1B1 LTR MaLR 3 386 -8 2 1429 555 178 49 33 chr1 110698476 110698598 -86496834 + ORR1B1-int LTR MaLR 2 125 -1838 2 1429 528 53 13 38 chr1 110698622 110698701 -86496731 + B1_Mm SINE Alu 71 147 0 2 1429 513 57 37 28 chr1 110698701 110698810 -86496622 + (CAAAA)n Simple_repeat Simple_repeat 1 110 0 2 1429 1201 234 7 11 chr1 110698811 110699088 -86496344 + ORR1B1-int LTR MaLR 336 611 -1352 2 1429 1246 271 35 8 chr1 110699093 110699585 -86495847 - RMER13A LTR ERVK 0 860 327 2 1429 259 119 24 0 chr1 110699677 110699719 -86495713 + MT2B LTR ERVL 1 43 -558 2 1429 1748 204 5 25 chr1 110699726 110700093 -86495339 - Lx4A LINE L1 -2 7056 6697 2 1429 264 156 0 0 chr1 110700095 110700140 -86495292 + ORR1B1-int LTR MaLR 1329 1373 -136 2 1429 6540 167 162 138 chr1 110701936 110702430 -86493002 + L1_Mur2 LINE L1 1536 2050 -3827 2 1429 369 0 0 0 chr1 110702430 110702471 -86492961 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1429 6540 167 162 138 chr1 110702471 110703281 -86492151 + L1_Mur2 LINE L1 2051 2892 -2985 2 1429 405 0 0 0 chr1 110703281 110703326 -86492106 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1429 6540 167 162 138 chr1 110703326 110703375 -86492057 + L1_Mur2 LINE L1 2893 2913 -2960 2 1429 995 234 11 82 chr1 110703375 110703655 -86491777 + RLTR9A LTR ERVK 104 363 -5 2 1429 4213 66 31 2 chr1 110703659 110704207 -86491225 + LTRIS2 LTR ERV1 1 564 0 2 1429 6540 167 162 138 chr1 110704207 110705010 -86490422 + L1_Mur2 LINE L1 2918 4037 -1840 2 1429 5908 187 51 45 chr1 110705011 110706375 -86489057 + L1_Mur2 LINE L1 4390 5760 -117 2 1429 1650 221 6 3 chr1 110706374 110706706 -86488726 + Lx4B LINE L1 6320 6652 -406 2 1429 225 182 284 15 chr1 110706949 110707016 -86488416 + RLTR41 LTR ERV1 62 146 -300 2 1429 396 269 87 33 chr1 110707071 110707221 -86488211 + RLTR41 LTR ERV1 263 420 -26 2 1429 1681 203 83 18 chr1 110707226 110707613 -86487819 + Lx4B LINE L1 6647 7058 0 2 1429 836 131 64 21 chr1 110707977 110708106 -86487326 + B1_Mus1 SINE Alu 2 139 -9 2 1429 339 25 0 0 chr1 110708106 110708146 -86487286 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1429 836 131 64 21 chr1 110708146 110708157 -86487275 + B1_Mus1 SINE Alu 140 148 0 2 1429 206 62 31 0 chr1 110708167 110708199 -86487233 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1429 32401 83 2 15 chr1 110708300 110713564 -86481868 + L1Md_F2 LINE L1 392 5585 -298 2 1429 7707 63 8 1 chr1 110713565 110714552 -86480880 + L1Md_F2 LINE L1 5587 6580 -2 2 1429 443 262 60 50 chr1 110714555 110714778 -86480654 - Lx9 LINE L1 -1755 5889 5630 3 1429 303 157 29 0 chr1 110714805 110714875 -86480557 + Lx9 LINE L1 7570 7641 -3 3 1429 22 56 0 0 chr1 110715451 110715487 -86479945 + AT_rich Low_complexity Low_complexity 1 36 0 3 1429 390 206 54 3 chr1 110715803 110716120 -86479312 + (TCTA)n Simple_repeat Simple_repeat 1 332 0 3 1429 214 250 0 16 chr1 110716083 110716144 -86479288 + CT-rich Low_complexity Low_complexity 2 61 0 3 1429 1145 74 32 8 chr1 110716190 110716446 -86478986 + (TCTA)n Simple_repeat Simple_repeat 1 262 0 3 1429 2635 83 44 5 chr1 110716482 110716870 -86478562 + RLTR9D LTR ERVK 1 403 0 3 1429 295 271 69 69 chr1 110717057 110717188 -86478244 - Lx9 LINE L1 -414 7230 7100 3 1429 562 360 23 58 chr1 110717344 110717692 -86477740 + Lx9 LINE L1 6373 6708 -936 3 1429 310 264 0 0 chr1 110717933 110718024 -86477408 + Lx6 LINE L1 7362 7452 -8 3 1429 305 45 43 43 chr1 110718605 110718674 -86476758 + (TTTTTG)n Simple_repeat Simple_repeat 4 72 0 3 1429 760 68 246 0 chr1 110718674 110718792 -86476640 - B1_Mus1 SINE Alu 0 148 2 3 1429 204 209 0 0 chr1 110720164 110720207 -86475225 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1429 486 0 0 0 chr1 110720674 110720728 -86474704 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3 1429 390 246 175 18 chr1 110720801 110721086 -86474346 + Lx9 LINE L1 7315 7644 0 3 1429 688 335 16 20 chr1 110721219 110721469 -86473963 - Lx5 LINE L1 -8 7042 6794 3 1429 1324 260 91 44 chr1 110721479 110722019 -86473413 - RMER2 LTR ERV1 -2 565 1 3 1429 1097 282 51 30 chr1 110722134 110722566 -86472866 - MuLV-int LTR ERV1 -112 7494 7054 3 1429 258 207 17 17 chr1 110723412 110723471 -86471961 - MuLV-int LTR ERV1 -1530 6076 6018 3 1429 362 322 16 8 chr1 110723903 110724065 -86471367 - MuLV-int LTR ERV1 -2000 5606 5515 3 1429 502 274 27 2 chr1 110724257 110724390 -86471042 - MuLV-int LTR ERV1 -1109 3954 3835 3 1429 353 236 52 43 chr1 110724384 110724499 -86470933 - MMERGLN-int LTR ERV1 -2685 4871 4756 3 1429 2267 57 194 12 chr1 110724957 110725292 -86470140 + MTA_Mm LTR MaLR 1 396 0 3 1429 296 280 0 0 chr1 110725338 110725429 -86470003 - MMERGLN-int LTR ERV1 -3373 4405 4333 3 1429 311 344 148 17 chr1 110725434 110725669 -86469763 + MTEb LTR MaLR 1 266 -113 3 1429 264 325 8 38 chr1 110726064 110726195 -86469237 + MTEb LTR MaLR 250 376 -3 3 1429 545 305 250 27 chr1 110726198 110726583 -86468849 + MTEb-int LTR MaLR 1 471 -1109 3 1429 270 0 0 0 chr1 110727735 110727765 -86467667 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 3 1429 949 266 80 95 chr1 110728383 110728974 -86466458 - Lx7 LINE L1 -46 7650 7069 3 1429 3848 81 0 17 chr1 110728969 110729497 -86465935 + L1_Mm LINE L1 4544 5062 -821 3 1429 1213 319 131 55 chr1 110729535 110730128 -86465304 + Lx9 LINE L1 6370 6991 -653 3 1429 276 53 0 0 chr1 110730128 110730166 -86465266 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1429 1213 319 131 55 chr1 110730166 110730540 -86464892 + Lx9 LINE L1 6992 7411 -233 3 1429 23 54 0 0 chr1 110730713 110730750 -86464682 + AT_rich Low_complexity Low_complexity 1 37 0 3 1429 189 0 0 0 chr1 110730902 110730923 -86464509 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1429 550 315 30 81 chr1 110731630 110731827 -86463605 + B3A SINE B2 2 188 -10 3 1429 1673 224 12 74 chr1 110732209 110732614 -86462818 + MTB_Mm LTR MaLR 27 406 -1 3 1429 387 0 0 0 chr1 110733310 110733353 -86462079 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1429 21 57 0 0 chr1 110733842 110733877 -86461555 + AT_rich Low_complexity Low_complexity 1 35 0 3 1429 240 35 0 0 chr1 110734343 110734372 -86461060 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1429 7412 173 41 15 chr1 110735026 110736711 -86458721 - Lx4A LINE L1 -6 7052 5307 3 1429 8946 119 27 28 chr1 110736709 110739112 -86456320 + Lx3A LINE L1 4470 6863 -118 3 1429 441 54 0 0 chr1 110739112 110739168 -86456264 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1429 8220 131 33 21 chr1 110739168 110739276 -86456156 + Lx3A LINE L1 6864 6980 -1 3 1429 1044 134 27 67 chr1 110739292 110739516 -86455916 - Lx4A LINE L1 -563 5314 5100 3 1429 5845 171 78 12 chr1 110739507 110740866 -86454566 - Lx4A LINE L1 -1380 4497 3049 3 1429 6884 114 25 20 chr1 110740860 110741108 -86454324 - L1_Mus4 LINE L1 0 6636 6390 3 1429 2835 103 5 7 chr1 110741108 110741530 -86453902 - BGLII LTR ERVK 0 421 1 3 1429 6884 114 25 20 chr1 110741530 110742326 -86453106 - L1_Mus4 LINE L1 -247 6389 5587 3 1429 23 68 0 0 chr1 110742379 110742423 -86453009 + AT_rich Low_complexity Low_complexity 1 44 0 3 1429 8790 11 0 0 chr1 110742423 110743585 -86451847 - L1Md_A LINE L1 -3 6579 5418 3 1429 9221 164 25 15 chr1 110743589 110744650 -86450782 - Lx4A LINE L1 -2752 3125 2063 3 1429 270 0 0 0 chr1 110744650 110744680 -86450752 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1429 9221 164 26 15 chr1 110744680 110745584 -86449848 - Lx4A LINE L1 -3815 2062 1146 3 1429 4768 55 3 0 chr1 110745584 110746169 -86449263 - LTRIS_Mus LTR ERV1 0 587 1 3 1429 2853 166 52 17 chr1 110746169 110746544 -86448888 - Lx4A LINE L1 -5941 1145 747 3 1429 892 188 9 47 chr1 110746583 110746795 -86448637 - RLTR22_Mur LTR ERVK -36 1812 1609 3 1429 3552 191 31 35 chr1 110746901 110747748 -86447684 - RLTR22_Mur LTR ERVK -990 858 16 3 1429 599 272 13 6 chr1 110747756 110747915 -86447517 - Lx4A LINE L1 -6375 711 552 3 1429 210 227 0 0 chr1 110747954 110747998 -86447434 + CT-rich Low_complexity Low_complexity 3 46 0 3 1429 407 305 7 99 chr1 110748061 110748203 -86447229 - B1_Mur1 SINE Alu -20 129 1 3 1429 1612 184 63 81 chr1 110748268 110748665 -86446767 - ORR1B1 LTR MaLR 0 394 5 3 1429 1067 218 47 8 chr1 110748862 110749116 -86446316 - RLTR46 LTR ERVK -5 315 52 3 1429 699 120 0 0 chr1 110749116 110749224 -86446208 - IAPEY3-int LTR ERVK 0 7581 7474 3 1429 2562 64 0 0 chr1 110749249 110749561 -86445871 - RLTR10-int LTR ERVK -190 1797 1486 3 1429 2560 152 39 30 chr1 110749563 110750172 -86445260 - IAPEY3-int LTR ERVK -151 7529 6889 3 1429 2930 57 3 0 chr1 110750176 110750529 -86444903 - IAPEY2_LTR LTR ERVK -3 354 1 3 1429 291 28 0 0 chr1 110750535 110750571 -86444861 - U2 snRNA snRNA -152 36 1 3 1429 291 128 0 0 chr1 110750577 110750624 -86444808 - IAPEY3-int LTR ERVK -686 6895 6849 3 1429 1897 126 11 4 chr1 110750643 110750940 -86444492 - IAPEY3-int LTR ERVK -1882 5699 5420 3 1429 293 182 36 0 chr1 110750940 110750995 -86444437 - IAPEY3-int LTR ERVK -6039 503 447 3 1429 3330 256 52 30 chr1 110751017 110751965 -86443467 - IAPEY3-int LTR ERVK -6177 1503 535 3 1429 270 0 0 0 chr1 110751987 110752017 -86443415 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1429 952 224 27 18 chr1 110752070 110752314 -86443118 - RLTR46 LTR ERVK -79 266 31 3 1429 542 307 13 54 chr1 110753338 110753562 -86441870 - Lx9 LINE L1 -451 7193 6979 3 1429 2002 233 50 8 chr1 110754677 110755158 -86440274 + RLTR16 LTR ERVK 1 501 -4 3 178 870 352 37 7 chr1 110755622 110756054 -86439378 - Lx8 LINE L1 -465 7008 6564 3 1430 1323 219 62 37 chr1 110756139 110756462 -86438970 + ORR1B2 LTR MaLR 29 359 -8 3 1430 690 174 155 0 chr1 110756517 110756672 -86438760 - RMER6C LTR ERVK -4 686 508 3 1430 9107 191 26 6 chr1 110756687 110758558 -86436874 - Lx2A1 LINE L1 -53 5824 3917 3 1430 1754 168 3 9 chr1 110758558 110758883 -86436549 + Lx2A1 LINE L1 5843 6165 -843 3 1430 469 257 59 73 chr1 110758853 110759126 -86436306 - Lx9 LINE L1 -1708 5936 5630 3 1430 4282 176 53 0 chr1 110759686 110760480 -86434952 + Lx2A1 LINE L1 6171 7006 -2 3 1430 244 186 43 0 chr1 110760503 110760573 -86434859 + (AACTG)n Simple_repeat Simple_repeat 3 75 0 3 1430 1328 192 141 21 chr1 110760573 110760955 -86434477 - RMER6C LTR ERVK -262 428 1 3 1430 984 317 109 20 chr1 110760955 110761894 -86433538 - L1_Mur3 LINE L1 -3212 2668 1647 3 1430 185 94 31 0 chr1 110762072 110762104 -86433328 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 1430 259 327 23 74 chr1 110762109 110762284 -86433148 - RMER4B LTR ERVK -408 177 12 3 1430 29 0 0 0 chr1 110762326 110762355 -86433077 + AT_rich Low_complexity Low_complexity 1 29 0 3 1430 836 217 23 0 chr1 110762673 110762848 -86432584 + URR1A DNA MER1_type 48 226 0 3 1430 640 288 76 72 chr1 110764135 110764535 -86430897 - RLTR11A2 LTR ERVK -41 400 1 3 1430 21 0 0 0 chr1 110765371 110765392 -86430040 + AT_rich Low_complexity Low_complexity 1 21 0 3 1430 317 149 15 0 chr1 110765935 110766002 -86429430 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1430 2193 335 49 28 chr1 110766066 110767164 -86428268 - Lx9 LINE L1 -206 7438 6318 3 1430 259 246 30 15 chr1 110767433 110767499 -86427933 - Lx9 LINE L1 -1752 5892 5826 3 1430 753 69 0 0 chr1 110767557 110767658 -86427774 - B1_Mm SINE Alu -5 142 42 3 1430 284 0 0 160 chr1 110767661 110767805 -86427627 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 3 1430 355 86 0 79 chr1 110767806 110767869 -86427563 - PB1D9 SINE Alu -61 59 2 3 1430 291 54 0 0 chr1 110768776 110768813 -86426619 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1430 186 71 0 0 chr1 110769120 110769148 -86426284 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 1430 34 65 0 0 chr1 110769879 110769941 -86425491 + AT_rich Low_complexity Low_complexity 1 62 0 3 1430 244 189 0 26 chr1 110771137 110771213 -86424219 + (TTA)n Simple_repeat Simple_repeat 1 74 0 3 1430 283 73 36 0 chr1 110771811 110771866 -86423566 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 3 1430 940 174 13 62 chr1 110772408 110772635 -86422797 - Lx2 LINE L1 0 6997 6782 3 1430 8615 167 27 2 chr1 110772635 110774278 -86421154 + L1_Mur2 LINE L1 2940 4623 -1254 3 1430 335 285 94 63 chr1 110774278 110774469 -86420963 - B3A SINE B2 0 198 2 3 1430 231 330 51 67 chr1 110774477 110774730 -86420702 + MER67C LTR ERV1 154 402 -309 3 1430 26 82 0 0 chr1 110774968 110775029 -86420403 + AT_rich Low_complexity Low_complexity 1 61 0 3 1430 384 296 76 62 chr1 110775119 110775263 -86420169 + B1F2 SINE Alu 2 147 -2 3 1430 255 86 0 0 chr1 110775416 110775451 -86419981 - RLTR45 LTR ERVK 0 482 448 3 1430 609 14 0 0 chr1 110775578 110775648 -86419784 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 3 1430 264 100 0 0 chr1 110775734 110775774 -86419658 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1430 22 0 0 0 chr1 110776102 110776124 -86419308 + AT_rich Low_complexity Low_complexity 1 22 0 3 1430 210 150 0 0 chr1 110776612 110776652 -86418780 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1430 767 155 11 11 chr1 110776805 110776981 -86418451 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 3 1430 690 228 50 8 chr1 110777446 110777624 -86417808 - Lx9 LINE L1 -3 7641 7437 3 1430 723 12 0 0 chr1 110777624 110777708 -86417724 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 1430 701 210 76 10 chr1 110777708 110777845 -86417587 - Lx9 LINE L1 -208 7436 7286 3 1430 1142 293 98 2 chr1 110777848 110778245 -86417187 + Lx9 LINE L1 6714 7148 -496 3 1430 2228 239 58 52 chr1 110778543 110779028 -86416404 - RMER6C LTR ERVK -33 723 322 3 1430 834 110 0 0 chr1 110779028 110779174 -86416258 + (TC)n Simple_repeat Simple_repeat 1 146 0 3 1430 2228 231 58 35 chr1 110779174 110779512 -86415920 - RMER6C LTR ERVK -354 336 1 3 1430 28 0 0 0 chr1 110779752 110779780 -86415652 + AT_rich Low_complexity Low_complexity 1 28 0 3 1430 518 314 54 17 chr1 110780948 110781188 -86414244 - L1MEg1 LINE L1 -5885 350 102 3 1430 438 195 0 0 chr1 110781371 110781453 -86413979 - Lx3B LINE L1 -800 6173 6092 3 1430 3679 131 84 2 chr1 110781452 110782050 -86413382 + Lx3A LINE L1 6188 6834 -147 4 1430 432 0 0 0 chr1 110782101 110782149 -86413283 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1430 785 58 131 8 chr1 110782891 110783013 -86412419 + L1_Mus1 LINE L1 6430 6566 -1 4 1430 999 126 0 0 chr1 110784214 110784373 -86411059 + (CA)n Simple_repeat Simple_repeat 1 159 0 4 1430 315 0 0 0 chr1 110784573 110784608 -86410824 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1430 1088 44 0 0 chr1 110784608 110784743 -86410689 - B1_Mm SINE Alu -12 135 1 4 1430 408 67 0 0 chr1 110785443 110785503 -86409929 + (TAG)n Simple_repeat Simple_repeat 2 61 0 4 1430 302 258 8 0 chr1 110785517 110785530 -86409902 + polypyrimidine Low_complexity Low_complexity 114 126 0 4 1430 1364 40 0 6 chr1 110785530 110785706 -86409726 + (TTC)n Simple_repeat Simple_repeat 3 177 0 4 1430 302 258 8 0 chr1 110785706 110785816 -86409616 + CT-rich Low_complexity Low_complexity 3 113 0 4 1430 405 301 73 25 chr1 110785870 110786074 -86409358 - MTD LTR MaLR -205 214 1 4 1430 1143 62 14 0 chr1 110786296 110786441 -86408991 + B1_Mm SINE Alu 1 147 0 4 1430 264 91 0 0 chr1 110786455 110786499 -86408933 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 4 1430 300 27 0 0 chr1 110786505 110786542 -86408890 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1430 483 118 0 0 chr1 110786816 110786901 -86408531 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1430 197 33 33 0 chr1 110788847 110788877 -86406555 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1430 193 75 0 48 chr1 110788898 110788940 -86406492 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1430 1117 340 26 26 chr1 110788962 110789424 -86406008 - Lx8 LINE L1 -458 7015 6554 4 1430 34 42 0 0 chr1 110789605 110789653 -86405779 + AT_rich Low_complexity Low_complexity 1 48 0 4 1430 575 349 63 0 chr1 110790168 110790357 -86405075 + B3 SINE B2 16 216 0 4 1430 1344 107 96 26 chr1 110791748 110791978 -86403454 - L1Md_F2 LINE L1 -13 6569 6324 4 1430 24 32 0 0 chr1 110793015 110793046 -86402386 + AT_rich Low_complexity Low_complexity 1 31 0 4 1430 3546 151 71 3 chr1 110793538 110794170 -86401262 - Lx LINE L1 0 6654 5980 4 1430 375 23 0 0 chr1 110794577 110794621 -86400811 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1430 465 364 10 66 chr1 110795235 110795432 -86400000 - B3A SINE B2 0 198 13 4 1430 243 140 95 95 chr1 110798106 110798169 -86397263 + Lx7 LINE L1 7628 7690 -6 4 1430 4402 83 29 23 chr1 110798549 110799229 -86396203 - L1Md_F2 LINE L1 0 6582 5927 4 1430 221 97 29 88 chr1 110799229 110799266 -86396166 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1430 30 0 0 0 chr1 110801234 110801264 -86394168 + AT_rich Low_complexity Low_complexity 1 30 0 4 1430 1456 209 116 3 chr1 110802049 110802395 -86393037 + RLTR28 LTR ERVL 27 411 -113 4 1430 3825 107 9 70 chr1 110802662 110803345 -86392087 - Lx3_Mus LINE L1 -565 6444 5804 4 1430 1759 125 48 13 chr1 110803345 110803654 -86391778 + Lx3_Mus LINE L1 6679 6998 -11 4 1430 200 283 0 16 chr1 110803884 110803945 -86391487 + CT-rich Low_complexity Low_complexity 1 60 0 4 1430 3280 96 21 0 chr1 110803954 110804422 -86391010 - L1_Mus2 LINE L1 -2 6564 6087 4 1430 288 0 0 0 chr1 110804632 110804664 -86390768 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1430 954 112 0 0 chr1 110807072 110807241 -86388191 + (TG)n Simple_repeat Simple_repeat 2 170 0 4 1430 776 293 89 0 chr1 110807687 110808001 -86387431 - L1_Mur3 LINE L1 -306 5574 5233 4 1430 865 249 46 4 chr1 110807999 110808237 -86387195 + L1_Mur3 LINE L1 3778 4025 -1855 4 1430 2595 41 3 39 chr1 110808241 110808597 -86386835 - IAPEY_LTR LTR ERVK 0 385 43 4 1430 2924 259 76 21 chr1 110808609 110809128 -86386304 + L1_Mur3 LINE L1 4028 4600 -1280 4 1430 1513 217 47 11 chr1 110809128 110809491 -86385941 - ORR1C1 LTR MaLR 0 378 3 4 1430 2924 259 76 21 chr1 110809491 110810133 -86385299 + L1_Mur3 LINE L1 4601 5252 -628 4 1430 28 0 0 0 chr1 110811250 110811278 -86384154 + AT_rich Low_complexity Low_complexity 1 28 0 4 1430 5955 173 43 3 chr1 110811282 110812298 -86383134 - Lx3B LINE L1 -5 6968 5922 4 1430 857 87 0 16 chr1 110812298 110812427 -86383005 + (TTTTC)n Simple_repeat Simple_repeat 2 128 0 4 1430 5955 173 43 3 chr1 110812427 110812550 -86382882 - Lx3B LINE L1 -1052 5921 5785 4 1430 8576 124 58 17 chr1 110812550 110814951 -86380481 + Lx3A LINE L1 4505 6974 -7 4 1430 276 328 48 16 chr1 110815255 110815379 -86380053 + Lx8 LINE L1 7209 7336 -137 4 1430 29 60 0 0 chr1 110815674 110815724 -86379708 + AT_rich Low_complexity Low_complexity 1 50 0 4 1430 598 167 4 2 chr1 110815782 110815896 -86379536 + Lx4B LINE L1 6806 6898 -160 4 1430 1123 41 7 7 chr1 110815964 110816110 -86379322 - B1_Mus2 SINE Alu 0 147 2 4 1430 1612 248 35 10 chr1 110817049 110817448 -86377984 + MTC LTR MaLR 5 413 -8 4 1430 621 0 0 0 chr1 110817560 110817629 -86377803 + (TTC)n Simple_repeat Simple_repeat 2 70 0 4 1430 258 32 0 0 chr1 110817629 110817660 -86377772 + (TTA)n Simple_repeat Simple_repeat 1 31 0 4 1430 2595 69 6 3 chr1 110817660 110818009 -86377423 - L1_Mus2 LINE L1 -4 6562 6213 4 1430 338 0 24 0 chr1 110818821 110818863 -86376569 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1430 4497 184 36 9 chr1 110818864 110819735 -86375697 - Lx4A LINE L1 -2 7056 6163 4 1430 1042 182 59 55 chr1 110819736 110819991 -86375441 - Lx4A LINE L1 -1013 6045 5790 4 1430 978 198 63 3 chr1 110819988 110820224 -86375208 + Lx3_Mus LINE L1 5552 5804 -82 4 1430 24 67 0 0 chr1 110821850 110821895 -86373537 + AT_rich Low_complexity Low_complexity 1 45 0 4 1430 324 120 0 0 chr1 110821981 110822031 -86373401 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1430 26 0 0 0 chr1 110822033 110822059 -86373373 + AT_rich Low_complexity Low_complexity 1 26 0 4 1430 23 0 0 0 chr1 110822742 110822765 -86372667 + AT_rich Low_complexity Low_complexity 1 23 0 4 1430 4448 135 31 12 chr1 110822770 110823520 -86371912 - Lx3_Mus LINE L1 -5 7004 6241 4 1430 2653 83 2 89 chr1 110823520 110823971 -86371461 + Lx3_Mus LINE L1 5796 6207 -802 4 1430 1125 69 0 0 chr1 110824092 110824237 -86371195 - B1_Mm SINE Alu -2 145 1 4 1430 1213 274 7 140 chr1 110824446 110825031 -86370401 + RLTR18B LTR ERVK 4 510 -2 4 1430 22 80 0 0 chr1 110825246 110825296 -86370136 + AT_rich Low_complexity Low_complexity 1 50 0 4 1430 218 292 0 0 chr1 110826268 110826333 -86369099 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1430 2888 124 40 2 chr1 110827335 110827805 -86367627 - Lx3_Mus LINE L1 -8 7001 6514 4 1430 267 54 0 0 chr1 110827893 110827930 -86367502 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1430 432 333 50 0 chr1 110828090 110828210 -86367222 + RSINE1 SINE B4 4 129 -36 4 1430 447 19 0 0 chr1 110828250 110828302 -86367130 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1430 275 293 0 71 chr1 110828342 110828441 -86366991 + U6 snRNA snRNA 14 105 -2 4 1430 1304 335 65 43 chr1 110828780 110829653 -86365779 + Lx8 LINE L1 6576 7467 -6 4 1430 1132 170 5 20 chr1 110831783 110831981 -86363451 - Lx LINE L1 -462 6192 5998 4 1430 7312 156 22 3 chr1 110831982 110833401 -86362031 + Lx LINE L1 4573 6015 -639 4 1430 4867 186 67 17 chr1 110833564 110834026 -86361406 - Lx2B LINE L1 -3 6997 6499 4 1430 3800 54 4 2 chr1 110834026 110834508 -86360924 - L1Md_F2 LINE L1 0 6582 6100 4 1430 4867 187 65 20 chr1 110834508 110835108 -86360324 - Lx2B LINE L1 -502 6498 5885 4 1430 4829 186 39 19 chr1 110835112 110836259 -86359173 + Lx2B LINE L1 4722 5916 -650 4 1430 408 359 0 12 chr1 110837054 110837226 -86358206 + Lx6 LINE L1 7291 7460 0 4 1430 1026 295 75 13 chr1 110837246 110837713 -86357719 - Lx9 LINE L1 0 7644 7149 4 1430 1585 161 66 36 chr1 110837720 110838022 -86357410 + ORR1B1 LTR MaLR 41 351 -43 4 1430 401 107 0 0 chr1 110838122 110838178 -86357254 + ORR1A4 LTR MaLR 274 329 0 4 1430 1085 303 31 55 chr1 110838178 110838632 -86356800 - Lx9 LINE L1 -622 7022 6580 4 1430 516 276 131 35 chr1 110838608 110838920 -86356512 - L1M3 LINE L1 -1131 5009 4668 4 1430 185 59 59 0 chr1 110839224 110839258 -86356174 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 4 1430 416 253 117 60 chr1 110839266 110839514 -86355918 - L1M3 LINE L1 -1917 4223 3962 4 1430 281 352 8 115 chr1 110839573 110839695 -86355737 - B3A SINE B2 -27 171 63 4 1430 261 0 0 0 chr1 110839732 110839761 -86355671 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1430 243 0 0 0 chr1 110839795 110839822 -86355610 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 4 1430 229 186 0 0 chr1 110840135 110840178 -86355254 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1430 3361 42 53 45 chr1 110841715 110842186 -86353246 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1430 13552 67 21 8 chr1 110842188 110843966 -86351466 - IAPEz-int LTR ERVK -2 6479 4678 4 1430 1865 95 8 0 chr1 110843984 110844236 -86351196 - IAPEz-int LTR ERVK -5183 2497 2244 4 1430 919 43 26 0 chr1 110844231 110844347 -86351085 - IAPEz-int LTR ERVK -5004 1477 1359 4 1430 3577 57 1 16 chr1 110844347 110844925 -86350507 - IAPEz-int LTR ERVK -5819 662 168 4 1430 237 327 0 0 chr1 110844925 110844980 -86350452 - RLTR27 LTR ERVK -34 275 221 4 1430 776 94 0 9 chr1 110844980 110845087 -86350345 - IAPEz-int LTR ERVK -7331 250 145 4 1430 227 267 0 0 chr1 110845087 110845132 -86350300 - RLTR27 LTR ERVK -34 275 231 4 1430 584 106 15 144 chr1 110845132 110845264 -86350168 - IAPEz-int LTR ERVK -6358 123 9 4 1430 3207 40 15 17 chr1 110845265 110845677 -86349755 - IAPLTR2a LTR ERVK 0 411 1 4 1430 272 339 93 16 chr1 110845726 110845855 -86349577 + MTEa LTR MaLR 3 141 -238 4 1430 325 284 42 17 chr1 110846094 110846212 -86349220 + MTEa LTR MaLR 259 379 0 4 1430 4220 137 66 3 chr1 110848109 110848803 -86346629 + Lx3A LINE L1 6235 6972 -9 4 1430 542 366 49 16 chr1 110849849 110850218 -86345214 - Lx8 LINE L1 -188 7285 6905 4 1430 22 0 0 0 chr1 110850309 110850331 -86345101 + AT_rich Low_complexity Low_complexity 1 22 0 4 1430 401 335 11 22 chr1 110850433 110850616 -86344816 + L1_Mur3 LINE L1 5080 5260 -620 4 1430 390 184 46 0 chr1 110850620 110850707 -86344725 + Lx9 LINE L1 7363 7453 -191 4 1430 324 64 0 0 chr1 110850717 110850764 -86344668 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1430 368 160 111 19 chr1 110850764 110850872 -86344560 + Lx9 LINE L1 7525 7642 -2 4 1430 1024 269 52 35 chr1 110850855 110851374 -86344058 + L1_Mur3 LINE L1 5257 5784 -96 4 1430 977 244 9 5 chr1 110851503 110851717 -86343715 - B3 SINE B2 0 216 2 4 1430 31 76 0 0 chr1 110851758 110851824 -86343608 + AT_rich Low_complexity Low_complexity 1 66 0 4 1430 343 239 0 0 chr1 110851874 110851941 -86343491 - B3A SINE B2 -124 74 8 4 1430 210 37 0 0 chr1 110851961 110851988 -86343444 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 4 1430 3181 202 27 41 chr1 110851993 110852694 -86342738 - Lx4A LINE L1 -2 7056 6366 4 1430 668 125 158 0 chr1 110852694 110852814 -86342618 + BGLII LTR ERVK 1 139 -282 4 1430 207 0 0 0 chr1 110852814 110852837 -86342595 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1430 2549 186 72 42 chr1 110852846 110853390 -86342042 + L1VL1 LINE L1 1 560 -5862 5 1430 3286 22 25 0 chr1 110853390 110853791 -86341641 + IAPLTR2a LTR ERVK 1 411 0 5 1430 1018 115 25 85 chr1 110853792 110853991 -86341441 + IAPEz-int LTR ERVK 9 195 -6286 5 1430 236 302 0 0 chr1 110853991 110854044 -86341388 + RLTR27 LTR ERVK 223 275 -34 5 1430 3524 67 33 18 chr1 110854044 110854532 -86340900 + IAPEz-int LTR ERVK 168 662 -5819 5 1430 978 50 0 0 chr1 110854532 110854651 -86340781 + IAPEz-int LTR ERVK 1359 1477 -5004 5 1430 1862 92 12 0 chr1 110854646 110854897 -86340535 + IAPEz-int LTR ERVK 2244 2497 -5183 5 1430 13947 66 11 5 chr1 110854915 110856707 -86338725 + IAPEz-int LTR ERVK 4678 6479 -2 5 1430 3759 29 49 0 chr1 110856709 110857162 -86338270 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1430 4663 108 6 19 chr1 110857162 110858402 -86337030 + L1VL1 LINE L1 555 1779 -1919 5 1430 10666 99 8 14 chr1 110858401 110859992 -86335440 - L1_Mm LINE L1 -2175 3708 2128 5 1430 3051 231 49 87 chr1 110860323 110861200 -86334232 - RMER13B LTR ERVK -63 845 2 5 1430 443 258 30 42 chr1 110861339 110861505 -86333927 - RNLTR23 LTR ERVK 0 642 479 5 1430 414 57 0 0 chr1 110862073 110862126 -86333306 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1430 21 36 0 0 chr1 110862398 110862426 -86333006 + AT_rich Low_complexity Low_complexity 1 28 0 5 1430 834 147 0 24 chr1 110864218 110864385 -86331047 - L1_Mus4 LINE L1 0 6636 6474 5 1430 1764 224 37 0 chr1 110864386 110864788 -86330644 + Lx3A LINE L1 6552 6968 -13 5 1430 23 0 0 0 chr1 110864806 110864829 -86330603 + AT_rich Low_complexity Low_complexity 1 23 0 5 1430 501 127 0 0 chr1 110865144 110865223 -86330209 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1430 280 291 25 25 chr1 110865368 110865488 -86329944 + Lx6 LINE L1 7330 7449 -11 5 1430 1233 236 77 7 chr1 110865629 110865927 -86329505 + Lx7 LINE L1 6914 7232 -464 5 1430 2784 245 60 19 chr1 110865957 110866256 -86329176 - Lx4B LINE L1 0 7058 6762 5 1430 426 20 0 0 chr1 110866256 110866307 -86329125 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1430 2784 245 60 19 chr1 110866307 110866728 -86328704 - Lx4B LINE L1 -297 6761 6309 5 1430 286 323 0 0 chr1 110866724 110866820 -86328612 + Lx7 LINE L1 7253 7348 -348 5 1430 240 185 0 0 chr1 110866833 110866887 -86328545 + T-rich Low_complexity Low_complexity 1 54 0 5 1430 881 268 26 44 chr1 110866905 110867248 -86328184 + Lx7 LINE L1 7355 7691 -5 5 1430 21 0 0 0 chr1 110867342 110867363 -86328069 + AT_rich Low_complexity Low_complexity 1 21 0 5 1430 212 221 25 50 chr1 110867563 110867682 -86327750 + (TTTA)n Simple_repeat Simple_repeat 4 119 0 5 1430 3637 183 16 96 chr1 110868219 110868240 -86327192 - Lx2B LINE L1 -609 6391 6371 5 1430 2127 171 15 12 chr1 110868240 110868643 -86326789 - Lx2 LINE L1 -2 6995 6592 5 1430 4019 183 16 96 chr1 110868643 110869281 -86326151 - Lx2B LINE L1 -630 6370 5790 5 1430 1117 75 0 0 chr1 110869281 110869427 -86326005 - B1_Mm SINE Alu 0 147 2 5 1430 4938 171 1 5 chr1 110869427 110870292 -86325140 - L1_Mm LINE L1 -86 5797 4936 5 1430 408 305 29 58 chr1 110870285 110870459 -86324973 + Lx7 LINE L1 6831 6999 -697 5 1430 22 0 0 0 chr1 110871027 110871049 -86324383 + AT_rich Low_complexity Low_complexity 1 22 0 5 1430 27 0 0 0 chr1 110872480 110872507 -86322925 + AT_rich Low_complexity Low_complexity 1 27 0 5 1430 233 330 0 88 chr1 110872872 110872985 -86322447 + MTE2b LTR MaLR 1 103 -276 5 1430 964 307 137 8 chr1 110872926 110873277 -86322155 + MT2A LTR ERVL 45 440 -93 5 1430 200 94 31 0 chr1 110873293 110873325 -86322107 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 5 1430 3595 167 12 11 chr1 110873459 110874124 -86321308 + Lx LINE L1 5988 6653 -1 5 1430 446 330 48 75 chr1 110874138 110874325 -86321107 + MTE2b LTR MaLR 195 376 -3 5 1430 2983 191 25 14 chr1 110874420 110874977 -86320455 + RLTR20D LTR ERVK 1 563 -5 5 1430 504 0 0 0 chr1 110874977 110875033 -86320399 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 5 1430 28 71 0 0 chr1 110875210 110875266 -86320166 + AT_rich Low_complexity Low_complexity 1 56 0 5 1430 401 350 70 37 chr1 110875268 110875538 -86319894 + B4A SINE B4 1 279 -13 5 1430 228 35 0 0 chr1 110875542 110875571 -86319861 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1430 250 271 21 10 chr1 110875652 110875749 -86319683 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 5 1430 373 326 80 59 chr1 110875932 110876255 -86319177 - ORR1E LTR MaLR -1 378 1 5 1430 466 236 42 54 chr1 110876942 110877108 -86318324 + RNLTR23 LTR ERVK 479 642 0 5 1430 914 144 0 0 chr1 110877314 110877446 -86317986 + B1_Mus1 SINE Alu 5 136 -12 5 1430 258 0 0 67 chr1 110877446 110877491 -86317941 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 1430 330 26 0 0 chr1 110877635 110877674 -86317758 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1430 369 58 0 0 chr1 110877674 110877726 -86317706 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1430 279 0 0 0 chr1 110878121 110878152 -86317280 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1430 369 0 0 0 chr1 110878152 110878192 -86317240 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1430 654 212 30 0 chr1 110878837 110879002 -86316430 + Lx4A LINE L1 2416 2585 -3292 5 1430 8845 182 58 31 chr1 110879002 110881986 -86313446 + Lx4A LINE L1 2979 6371 -687 5 1430 1598 125 21 28 chr1 110881986 110882274 -86313158 - BGLII LTR ERVK 0 421 136 5 1430 5147 122 18 4 chr1 110882274 110883095 -86312337 - L1_Mus3 LINE L1 -1 6637 5805 5 1430 2989 29 2 113 chr1 110883100 110883535 -86311897 - RLTR10 LTR ERVK -3 387 1 5 1430 16518 25 14 5 chr1 110883537 110885461 -86309971 - RLTR10-int LTR ERVK -3 1984 44 5 1430 489 298 0 6 chr1 110885461 110885480 -86309952 - Lx8 LINE L1 -1646 5827 5809 5 1430 2968 34 2 113 chr1 110885480 110885915 -86309517 - RLTR10 LTR ERVK -3 387 1 5 1430 1062 85 0 0 chr1 110885915 110886056 -86309376 - L1_Mus3 LINE L1 -828 5810 5670 5 178 5294 117 21 7 chr1 110886052 110887615 -86307817 + L1Md_F LINE L1 447 2031 -3852 5 1431 432 296 22 27 chr1 110887747 110887931 -86307501 - L1M1 LINE L1 -487 5813 5631 5 1431 353 22 22 0 chr1 110887932 110887978 -86307454 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 1431 22 0 0 0 chr1 110890186 110890208 -86305224 + AT_rich Low_complexity Low_complexity 1 22 0 5 1431 36 23 0 0 chr1 110890236 110890279 -86305153 + AT_rich Low_complexity Low_complexity 1 43 0 5 1431 619 275 60 27 chr1 110890980 110891163 -86304269 - RMER20B LTR ERVK -11 616 428 5 1431 2439 87 35 19 chr1 110891278 110891653 -86303779 + RLTR9E LTR ERVK 1 381 -28 5 1431 1564 221 74 70 chr1 110891660 110892063 -86303369 + L1_Mur3 LINE L1 2598 3016 -2864 5 1431 662 65 0 11 chr1 110892063 110892156 -86303276 + (GGGAGA)n Simple_repeat Simple_repeat 4 95 0 5 1431 1564 221 74 70 chr1 110892156 110892478 -86302954 + L1_Mur3 LINE L1 3017 3326 -2554 5 1431 2905 104 7 1 chr1 110892461 110892889 -86302543 + L1_Mus3 LINE L1 5789 6223 -415 5 1431 302 341 22 73 chr1 110892889 110893025 -86302407 + RMER2 LTR ERV1 333 461 -106 5 1431 567 0 0 0 chr1 110894080 110894143 -86301289 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1431 30 77 0 0 chr1 110895446 110895511 -86299921 + AT_rich Low_complexity Low_complexity 1 65 0 5 1431 9576 93 21 47 chr1 110895579 110896339 -86299093 - L1VL4 LINE L1 -6 3908 3128 5 1431 3811 124 165 14 chr1 110896339 110896667 -86298765 + RMER17D2 LTR ERVK 1 413 -396 5 1431 660 26 0 0 chr1 110896667 110896745 -86298687 + (TCTCC)n Simple_repeat Simple_repeat 1 78 0 5 1431 3811 124 165 14 chr1 110896745 110897119 -86298313 + RMER17D2 LTR ERVK 414 809 0 5 1431 9576 93 21 47 chr1 110897119 110897356 -86298076 - L1VL4 LINE L1 -787 3127 2888 5 1431 1056 108 0 0 chr1 110897356 110897513 -86297919 + (TTTC)n Simple_repeat Simple_repeat 4 160 0 5 1431 9576 135 59 40 chr1 110897513 110898578 -86296854 - L1VL4 LINE L1 -2994 2892 1712 5 1431 231 36 0 0 chr1 110898578 110898606 -86296826 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 5 1431 9324 155 52 11 chr1 110898606 110899724 -86295708 - L1VL4 LINE L1 -4175 1711 543 5 1431 428 354 15 27 chr1 110899936 110900197 -86295235 + MuRRS4-int LTR ERV1 1180 1437 -3626 5 1431 280 241 25 25 chr1 110900726 110900807 -86294625 + RLTR4_MM-int LTR ERV1 3518 3598 -3854 5 1431 581 328 61 26 chr1 110901033 110901415 -86294017 + RLTR4_MM-int LTR ERV1 4024 4438 -3168 5 1431 1139 350 13 4 chr1 110901737 110902193 -86293239 + MuRRS4-int LTR ERV1 3555 4014 -1049 5 1431 697 181 149 6 chr1 110902488 110902649 -86292783 - MusHAL1 LINE L1 -1115 1597 1414 5 1431 277 190 17 33 chr1 110902649 110902709 -86292723 + RMER2 LTR ERV1 12 70 -497 5 1431 3167 213 24 13 chr1 110902739 110903795 -86291637 - L1_Mur1 LINE L1 -3875 2011 940 5 1431 4752 50 2 0 chr1 110903806 110904385 -86291047 - L1Md_F2 LINE L1 -15 6567 5988 5 1431 7645 71 7 1 chr1 110904386 110905393 -86290039 - L1_Mm LINE L1 -225 5658 4646 5 1431 216 0 0 0 chr1 110905419 110905443 -86289989 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1431 4529 186 77 5 chr1 110905517 110906410 -86289022 + RMER17B LTR ERVK 1 958 0 5 1431 7769 202 115 65 chr1 110906876 110909272 -86286160 - L1_Mur2 LINE L1 -601 5276 2763 5 1431 265 163 0 0 chr1 110909272 110909315 -86286117 + RMER19C LTR ERVK 1 43 -568 5 1431 3912 23 0 0 chr1 110909314 110909784 -86285648 - MTA_Mm-int LTR MaLR -628 470 1 5 1431 1523 33 0 0 chr1 110909784 110909968 -86285464 - MTA_Mm LTR MaLR 0 396 213 5 1431 808 292 33 82 chr1 110909969 110910414 -86285018 + RMER19C LTR ERVK 136 508 -103 5 1431 2523 205 16 4 chr1 110910437 110911200 -86284232 - L1_Mur2 LINE L1 -4104 1773 997 5 1431 24 0 0 0 chr1 110912557 110912581 -86282851 + AT_rich Low_complexity Low_complexity 1 24 0 5 1431 6750 16 0 0 chr1 110912581 110913348 -86282084 - L1Md_A LINE L1 -1 6581 5815 5 1431 721 32 0 0 chr1 110913348 110913441 -86281991 + L1_Mm LINE L1 1881 1973 -3910 5 1431 563 248 7 0 chr1 110915811 110915960 -86279472 - L1_Mur3 LINE L1 -3522 2358 2209 5 1431 1831 214 16 13 chr1 110916101 110916480 -86278952 + ORR1B1 LTR MaLR 1 380 -14 5 1431 183 80 0 0 chr1 110916559 110916584 -86278848 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 5 1431 261 268 0 14 chr1 110916600 110916672 -86278760 - L1_Mur3 LINE L1 -3999 1881 1811 5 1431 2068 316 118 52 chr1 110916670 110918050 -86277382 + Lx8 LINE L1 5587 7057 -416 5 1431 979 104 8 0 chr1 110918541 110918675 -86276757 + B1_Mus1 SINE Alu 2 136 -12 5 1431 42 20 0 0 chr1 110920240 110920289 -86275143 + AT_rich Low_complexity Low_complexity 1 49 0 5 1431 24 103 0 0 chr1 110920566 110920653 -86274779 + AT_rich Low_complexity Low_complexity 1 87 0 5 1431 1638 158 3 11 chr1 110920946 110921233 -86274199 - Lx LINE L1 -4 6650 6366 5 1431 797 39 19 0 chr1 110921576 110921680 -86273752 + (GGGAGA)n Simple_repeat Simple_repeat 2 107 0 5 1431 4219 206 71 43 chr1 110921825 110923205 -86272227 + Lx6 LINE L1 4736 6171 -1289 5 1431 1159 279 68 43 chr1 110923217 110923685 -86271747 + RLTR11A2 LTR ERVK 4 483 -44 5 1431 610 224 49 0 chr1 110923761 110923897 -86271535 + Lx6 LINE L1 6239 6357 -693 5 1431 272 316 40 93 chr1 110923892 110924042 -86271390 + Lx6 LINE L1 7289 7430 -30 5 1431 294 29 0 0 chr1 110924278 110924313 -86271119 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 5 1431 2630 134 5 2 chr1 110924313 110924723 -86270709 - Lx3A LINE L1 -11 6970 6560 5 1431 487 143 71 12 chr1 110924738 110924823 -86270609 - Lx3A LINE L1 -673 6308 6219 5 1431 839 151 83 6 chr1 110924825 110925005 -86270427 - Lx3_Mus LINE L1 -853 6156 5963 6 1431 2679 124 47 6 chr1 110925002 110925488 -86269944 - L1_Mur1 LINE L1 -1388 4498 3993 6 1431 2731 59 11 0 chr1 110925496 110925854 -86269578 - L1Md_F2 LINE L1 0 6582 6221 6 1431 5541 55 1 4 chr1 110925854 110926548 -86268884 + L1_Mm LINE L1 4939 5630 -253 6 1431 6509 109 10 70 chr1 110926547 110927333 -86268099 - L1_Mur1 LINE L1 -1901 3985 3271 6 1431 1157 88 0 0 chr1 110927333 110927481 -86267951 - B1_Mus1 SINE Alu 0 148 1 6 1431 6509 109 10 70 chr1 110927481 110927875 -86267557 - L1_Mur1 LINE L1 -2616 3270 2876 6 1431 4892 141 75 64 chr1 110927896 110929208 -86266224 - L1_Mur1 LINE L1 -4335 1551 223 6 1431 2496 186 79 66 chr1 110929931 110930524 -86264908 - MT2B LTR ERVL 0 601 1 6 1431 24 77 0 0 chr1 110930775 110930827 -86264605 + AT_rich Low_complexity Low_complexity 1 52 0 6 1431 2429 92 24 3 chr1 110930885 110931225 -86264207 + L1_Mus3 LINE L1 6268 6614 -24 6 1431 35260 36 1 0 chr1 110931225 110937083 -86258349 + L1Md_T LINE L1 1 5589 -297 6 1431 8937 7 0 0 chr1 110937083 110938079 -86257353 + L1Md_T LINE L1 5590 6585 0 6 1431 260 53 26 0 chr1 110938110 110938148 -86257284 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 6 1431 384 22 0 0 chr1 110938573 110938618 -86256814 + (TTA)n Simple_repeat Simple_repeat 2 46 0 6 1431 207 205 0 0 chr1 110938619 110938658 -86256774 + (TAG)n Simple_repeat Simple_repeat 3 41 0 6 1431 4762 259 82 62 chr1 110938804 110940684 -86254748 - Lx7 LINE L1 0 7696 5785 6 1431 1289 173 28 0 chr1 110940686 110940940 -86254492 - Lx2A1 LINE L1 0 7008 6748 6 1431 2461 211 41 4 chr1 110940951 110941488 -86253944 - Lx7 LINE L1 -255 5622 5066 6 1431 1048 228 138 15 chr1 110941469 110941803 -86253629 - L1_Mur3 LINE L1 -227 5653 5279 6 1431 1620 102 152 7 chr1 110941825 110942102 -86253330 - L1Md_F2 LINE L1 -2 6580 6264 6 1431 2525 227 63 36 chr1 110942105 110942700 -86252732 - L1_Mur3 LINE L1 -614 5266 4672 6 1431 475 53 0 26 chr1 110942700 110942777 -86252655 + (TTA)n Simple_repeat Simple_repeat 2 76 0 6 1431 2525 227 63 36 chr1 110942777 110943004 -86252428 - L1_Mur3 LINE L1 -1209 4671 4422 6 1431 12231 186 42 148 chr1 110943100 110947909 -86247523 - Lx4A LINE L1 -1 7057 2747 6 1431 8314 38 0 0 chr1 110947909 110948903 -86246529 + L1Md_T LINE L1 5587 6580 -2 6 1431 12231 182 45 192 chr1 110948903 110949923 -86245509 - Lx4A LINE L1 -3131 2746 2061 6 1431 234 0 0 0 chr1 110949923 110949949 -86245483 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1431 12231 182 45 192 chr1 110949949 110950657 -86244775 - Lx4A LINE L1 -3817 2060 1282 6 1431 21 36 0 0 chr1 110951112 110951140 -86244292 + AT_rich Low_complexity Low_complexity 1 28 0 6 1431 22 0 0 0 chr1 110951267 110951289 -86244143 + AT_rich Low_complexity Low_complexity 1 22 0 6 1431 3157 188 46 22 chr1 110951851 110952566 -86242866 + MYSERV16_I-int LTR ERVK 1 1351 -1491 6 1431 967 70 16 0 chr1 110952674 110952802 -86242630 - B1_Mus2 SINE Alu -10 137 8 6 1431 420 235 15 118 chr1 110952689 110952824 -86242608 - MT2B LTR ERVL -325 276 156 6 1431 789 169 152 0 chr1 110952828 110953005 -86242427 - MYSERV16_I-int LTR ERVK -212 2114 1911 6 1431 542 268 82 21 chr1 110953014 110953208 -86242224 + RLTR20B1 LTR ERVK 217 422 -141 6 1431 723 208 153 5 chr1 110953234 110953437 -86241995 - L1_Mur3 LINE L1 -1451 4429 4197 6 1431 3190 224 82 29 chr1 110953448 110954160 -86241272 - L1_Mur3 LINE L1 -2142 3738 2992 6 1431 777 22 0 0 chr1 110954160 110954251 -86241181 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1431 3190 224 82 29 chr1 110954251 110954752 -86240680 - L1_Mur3 LINE L1 -2889 2991 2462 6 1431 182 62 0 30 chr1 110954753 110954786 -86240646 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1431 984 289 53 22 chr1 110954821 110955362 -86240070 + Lx6 LINE L1 5872 6675 -785 6 1431 1170 250 152 6 chr1 110955382 110955736 -86239696 - MTC-int LTR MaLR -851 407 2 6 1431 1651 244 37 5 chr1 110955788 110956167 -86239265 - MTC LTR MaLR -30 391 1 6 1431 878 260 99 31 chr1 110956168 110956593 -86238839 + Lx9 LINE L1 7190 7643 -1 6 1431 333 307 28 7 chr1 110956607 110956748 -86238684 + L1_Rod LINE L1 3607 3750 -2390 6 1431 919 295 93 11 chr1 110956750 110957241 -86238191 + Lx5 LINE L1 6096 6896 -800 6 1431 411 301 97 34 chr1 110957290 110957527 -86237905 + Lx5 LINE L1 7124 7375 -85 6 1431 568 318 80 36 chr1 110957632 110958267 -86237165 + L1_Rod LINE L1 3779 4477 -1666 6 1431 319 262 108 23 chr1 110958241 110958370 -86237062 + Lx8 LINE L1 5776 5915 -1558 6 1431 593 342 17 12 chr1 110958397 110958637 -86236795 - RMER15 LTR ERVL -96 479 239 6 1431 922 301 24 0 chr1 110958753 110958999 -86236433 - Lx9 LINE L1 -801 6843 6592 6 1431 2350 251 72 18 chr1 110959066 110959430 -86236002 + Lx9 LINE L1 6881 7246 -398 6 1431 234 0 0 0 chr1 110959430 110959456 -86235976 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1431 2350 251 72 18 chr1 110959456 110959814 -86235618 + Lx9 LINE L1 7247 7641 -3 6 1431 339 36 0 0 chr1 110959961 110960017 -86235415 - Lx LINE L1 0 6654 6599 6 1431 371 361 0 27 chr1 110960282 110960430 -86235002 + B1_Mur3 SINE Alu 1 144 -5 6 1431 250 286 11 0 chr1 110960430 110960521 -86234911 + GA-rich Low_complexity Low_complexity 3 94 0 6 1431 5588 45 16 0 chr1 110961481 110962170 -86233262 + L1Md_T LINE L1 5883 6582 0 6 1431 1186 261 61 19 chr1 110962387 110962702 -86232730 - Lx9 LINE L1 -380 7264 6929 6 1431 1046 278 49 22 chr1 110962702 110963070 -86232362 - ORR1C1 LTR MaLR 0 378 1 6 1431 1186 261 61 19 chr1 110963070 110963129 -86232303 - Lx9 LINE L1 -716 6928 6874 6 1431 37646 18 1 7 chr1 110963214 110968603 -86226829 + L1Md_A LINE L1 232 5586 -297 6 1431 8661 20 0 0 chr1 110968603 110969599 -86225833 + L1Md_A LINE L1 5587 6582 0 6 1431 913 193 11 136 chr1 110969600 110969953 -86225479 + Lx9 LINE L1 7336 7644 0 6 1431 315 244 103 9 chr1 110971079 110971195 -86224237 - Lx5 LINE L1 0 7050 6924 6 1431 560 84 12 0 chr1 110971938 110972021 -86223411 + (TC)n Simple_repeat Simple_repeat 2 85 0 6 1431 221 210 16 16 chr1 110972021 110972084 -86223348 + CT-rich Low_complexity Low_complexity 2 64 0 6 1431 243 88 0 0 chr1 110973024 110973058 -86222374 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1431 632 331 18 0 chr1 110973066 110973235 -86222197 - B3A SINE B2 -25 173 2 6 1431 360 305 75 43 chr1 110973265 110973426 -86222006 + Lx5 LINE L1 6104 6269 -781 6 1431 230 355 9 9 chr1 110973412 110973520 -86221912 + Lx7 LINE L1 6298 6405 -1291 6 1431 1224 330 79 51 chr1 110973645 110974824 -86220608 + Lx7 LINE L1 6249 7471 -2 6 1431 26 64 0 0 chr1 110974832 110974879 -86220553 + AT_rich Low_complexity Low_complexity 1 47 0 6 1431 24 67 0 0 chr1 110975092 110975137 -86220295 + AT_rich Low_complexity Low_complexity 1 45 0 6 1431 23 0 0 0 chr1 110975421 110975444 -86219988 + AT_rich Low_complexity Low_complexity 1 23 0 6 1431 259 361 19 0 chr1 110976410 110976565 -86218867 + CT-rich Low_complexity Low_complexity 5 162 0 6 1431 935 287 113 34 chr1 110976675 110977170 -86218262 - RMER5 LTR ERV1 0 534 1 6 1431 365 122 0 13 chr1 110977479 110977554 -86217878 + (CAA)n Simple_repeat Simple_repeat 2 75 0 6 1431 21 0 0 0 chr1 110977916 110977937 -86217495 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 233 232 0 18 chr1 110978541 110978598 -86216834 + (TATG)n Simple_repeat Simple_repeat 4 59 0 6 1431 469 44 0 29 chr1 110978610 110978680 -86216752 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1431 215 245 0 0 chr1 110979041 110979094 -86216338 + T-rich Low_complexity Low_complexity 1 53 0 6 1431 962 327 65 7 chr1 110979096 110979545 -86215887 + Lx9 LINE L1 6491 6965 -679 6 1431 482 348 22 0 chr1 110979578 110979759 -86215673 + Lx9 LINE L1 6490 6674 -970 6 1431 382 314 105 48 chr1 110979852 110980100 -86215332 + Lx9 LINE L1 6992 7253 -391 6 1431 42 65 0 0 chr1 110980388 110980465 -86214967 + AT_rich Low_complexity Low_complexity 1 77 0 6 1431 23 33 0 0 chr1 110980571 110980601 -86214831 + AT_rich Low_complexity Low_complexity 1 30 0 6 1431 232 262 49 0 chr1 110980630 110980691 -86214741 + MTEa LTR MaLR 1 64 -315 6 1431 7100 75 30 0 chr1 110980696 110981736 -86213696 + L1_Mus1 LINE L1 5497 6565 -2 6 1431 619 329 62 55 chr1 110981751 110982060 -86213372 + MTEa LTR MaLR 69 379 0 6 1431 730 345 32 47 chr1 110982117 110982460 -86212972 + MTE-int LTR MaLR 62 399 -1181 6 1431 756 89 0 0 chr1 110983101 110983224 -86212208 + (TC)n Simple_repeat Simple_repeat 1 123 0 6 1431 1746 253 38 40 chr1 110983551 110984077 -86211355 - RLTR17 LTR ERVK -57 635 111 6 1431 34 84 0 0 chr1 110985121 110985204 -86210228 + AT_rich Low_complexity Low_complexity 1 83 0 6 1431 3715 116 0 26 chr1 110985206 110985792 -86209640 - L1Md_F2 LINE L1 0 6582 6012 6 1431 1054 89 0 0 chr1 110986063 110986198 -86209234 + B1_Mus2 SINE Alu 1 135 -12 6 1431 720 0 0 0 chr1 110986198 110986278 -86209154 + (CAAAA)n Simple_repeat Simple_repeat 3 82 0 6 1431 611 25 0 24 chr1 110986885 110986967 -86208465 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 6 1431 35 107 0 0 chr1 110988450 110988590 -86206842 + AT_rich Low_complexity Low_complexity 1 140 0 6 1431 1225 290 65 29 chr1 110988590 110989269 -86206163 - Lx6 LINE L1 -26 7434 6455 6 1431 2730 251 74 17 chr1 110989271 110990458 -86204974 + Lx6 LINE L1 5183 6436 -614 6 1431 300 196 0 164 chr1 110991243 110991359 -86204073 + Lx9 LINE L1 7378 7474 -170 6 1431 357 62 0 0 chr1 110991361 110991409 -86204023 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1431 252 100 0 0 chr1 110991411 110991451 -86203981 + (CCA)n Simple_repeat Simple_repeat 3 42 0 6 1431 22 0 0 0 chr1 110991591 110991613 -86203819 + AT_rich Low_complexity Low_complexity 1 22 0 6 1431 11728 142 54 9 chr1 110991804 110993100 -86202332 - Lx LINE L1 -12 6642 5299 6 1431 5828 139 30 2 chr1 110993100 110994098 -86201334 - Lx3_Mus LINE L1 -8 7001 5976 6 1431 11728 171 10 35 chr1 110994098 110995819 -86199613 - Lx LINE L1 -585 5298 3630 6 1431 1728 142 41 0 chr1 110995826 110996121 -86199311 + MusHAL1 LINE L1 360 666 -2046 6 1431 333 47 0 0 chr1 110996301 110996344 -86199088 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1431 315 262 9 9 chr1 110996369 110996477 -86198955 + Lx9 LINE L1 7533 7640 -4 6 1431 1355 275 63 13 chr1 110996695 110997162 -86198270 - Lx7 LINE L1 -1800 5896 5375 6 1431 2414 192 38 38 chr1 110997227 110997725 -86197707 - Lx2B LINE L1 -65 6935 6438 6 1431 254 169 78 0 chr1 110997731 110997808 -86197624 - Lx7 LINE L1 -545 5302 5220 6 1431 1991 180 11 3 chr1 110998455 110998812 -86196620 - Lx2B LINE L1 -173 6827 6468 6 1431 2770 171 47 33 chr1 110998847 110999100 -86196332 - Lx2 LINE L1 -1 6996 6733 6 1431 489 34 0 0 chr1 110999100 110999159 -86196273 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1431 2770 171 47 33 chr1 110999159 110999480 -86195952 - Lx2 LINE L1 -265 6732 6414 6 1431 243 0 0 0 chr1 111000317 111000344 -86195088 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1431 450 53 0 0 chr1 111000344 111000400 -86195032 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1431 32 26 0 0 chr1 111000766 111000805 -86194627 + AT_rich Low_complexity Low_complexity 1 39 0 3 1431 1535 231 53 5 chr1 111002691 111003104 -86192328 - Lx9 LINE L1 -16 7628 7196 4 1431 22 0 0 0 chr1 111003322 111003344 -86192088 + AT_rich Low_complexity Low_complexity 1 22 0 5 1431 35 41 0 0 chr1 111005410 111005459 -86189973 + AT_rich Low_complexity Low_complexity 1 49 0 6 1431 2174 84 0 0 chr1 111006050 111006360 -86189072 + L1Md_F3 LINE L1 1213 1522 -4361 7 1431 2814 44 3 0 chr1 111006353 111006694 -86188738 - L1Md_F2 LINE L1 -417 6165 5824 8 1431 398 22 0 0 chr1 111006693 111006739 -86188693 + L1Md_F2 LINE L1 6130 6175 -407 8 1431 18418 66 21 5 chr1 111006734 111008094 -86187338 + L1Md_F3 LINE L1 3370 4725 -1158 7 1431 4039 58 9 15 chr1 111008094 111008624 -86186808 + L1Md_F2 LINE L1 6056 6582 0 9 1431 18418 54 11 9 chr1 111008624 111010304 -86185128 + L1Md_F3 LINE L1 4726 6441 -143 7 1431 208 143 0 0 chr1 111010322 111010357 -86185075 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1431 2360 259 51 65 chr1 111011401 111012277 -86183155 - Lx9 LINE L1 0 7644 6781 1 1431 7205 83 14 0 chr1 111013172 111014546 -86180886 - L1_Mus2 LINE L1 0 6566 5174 1 1431 1100 161 25 0 chr1 111017047 111017246 -86178186 - Lx3A LINE L1 0 6981 6778 1 1431 25 31 0 0 chr1 111017351 111017383 -86178049 + AT_rich Low_complexity Low_complexity 1 32 0 1 1431 597 303 11 16 chr1 111017426 111017614 -86177818 + B3A SINE B2 3 189 -9 1 1432 4748 210 27 22 chr1 111018002 111019067 -86176365 - Lx4B LINE L1 0 7058 5988 1 1432 7873 181 32 4 chr1 111019069 111019849 -86175583 - L1_Mur2 LINE L1 -270 5607 4807 1 1432 311 0 26 0 chr1 111019849 111019888 -86175544 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1432 7873 181 32 4 chr1 111019888 111020703 -86174729 - L1_Mur2 LINE L1 -1071 4806 3969 1 1432 2547 149 81 24 chr1 111020724 111021081 -86174351 - L1_Mur2 LINE L1 -4064 1813 1464 1 1432 3353 177 0 35 chr1 111021081 111021702 -86173730 - MT2B LTR ERVL -2 599 1 1 1432 2547 177 75 65 chr1 111021702 111022018 -86173414 - L1_Mur2 LINE L1 -4414 1463 1123 1 1432 3726 160 45 2 chr1 111022018 111022657 -86172775 - Lx LINE L1 -10 6644 5978 2 1432 2191 241 59 158 chr1 111022657 111022740 -86172692 - L1_Mur2 LINE L1 -5964 1122 1063 1 1432 1694 129 48 10 chr1 111022740 111023029 -86172403 - Lx2A LINE L1 0 7008 6709 2 1432 2191 241 59 158 chr1 111023029 111023741 -86171691 - L1_Mur2 LINE L1 -6024 1062 429 1 1432 23 33 0 0 chr1 111024266 111024296 -86171136 + AT_rich Low_complexity Low_complexity 1 30 0 2 1432 341 323 40 16 chr1 111024601 111024727 -86170705 + RSINE1 SINE B4 4 132 -33 2 1432 2420 47 0 0 chr1 111024952 111025252 -86170180 + IAPEz-int LTR ERVK 300 599 -5882 2 1432 2921 11 48 6 chr1 111025252 111025604 -86169828 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1432 27826 22 20 2 chr1 111025604 111028821 -86166611 - IAPEz-int LTR ERVK 0 6481 3210 2 1432 7525 76 107 12 chr1 111028820 111030009 -86165423 - IAPEz-int LTR ERVK -5168 1313 67 2 1432 1017 119 74 0 chr1 111029980 111030156 -86165276 - IAPEz-int LTR ERVK -6285 196 8 2 1432 2893 14 48 6 chr1 111030156 111030508 -86164924 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1432 438 116 0 115 chr1 111030508 111030586 -86164846 + IAPEz-int LTR ERVK 594 662 -5819 2 1432 2623 76 0 3 chr1 111030586 111030929 -86164503 + IAPEz-int LTR ERVK 1359 1700 -4781 2 1432 6874 35 2 17 chr1 111030922 111031763 -86163669 + IAPEz-int LTR ERVK 5651 6479 -2 2 1432 2266 114 79 70 chr1 111031765 111032236 -86163196 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1432 2844 73 5 9 chr1 111032251 111032794 -86162638 - IAPEz-int LTR ERVK -5923 558 94 2 1432 234 321 0 0 chr1 111032797 111032850 -86162582 - RLTR27 LTR ERVK -34 275 223 2 1432 1145 91 0 134 chr1 111032850 111033066 -86162366 - IAPEz-int LTR ERVK -6286 195 9 2 1432 2078 107 68 141 chr1 111033067 111033579 -86161853 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1432 2056 128 46 6 chr1 111033718 111034065 -86161367 + Lx3A LINE L1 6619 6979 -2 2 1432 3061 119 71 14 chr1 111034206 111034716 -86160716 + L1_Mus4 LINE L1 6095 6633 -3 2 1432 389 171 24 0 chr1 111034722 111034804 -86160628 + GA-rich Low_complexity Low_complexity 2 85 0 3 1432 740 256 6 6 chr1 111034804 111034977 -86160455 + MTC LTR MaLR 197 369 -52 3 1432 273 188 0 0 chr1 111034977 111035057 -86160375 + A-rich Low_complexity Low_complexity 1 80 0 3 1432 481 340 107 35 chr1 111035346 111035663 -86159769 + RMER5 LTR ERV1 49 388 -146 3 1432 314 370 89 0 chr1 111035672 111035807 -86159625 + RSINE1 SINE B4 2 148 -17 3 1432 225 186 0 0 chr1 111037034 111037104 -86158328 + GA-rich Low_complexity Low_complexity 1 70 0 3 1432 21 36 0 0 chr1 111037377 111037405 -86158027 + AT_rich Low_complexity Low_complexity 1 28 0 3 1432 463 252 62 0 chr1 111037888 111038099 -86157333 + Lx8 LINE L1 5732 5958 -1686 3 1432 1222 352 85 50 chr1 111038144 111039002 -86156430 + Lx8 LINE L1 6465 7352 -121 3 1432 277 288 106 54 chr1 111039186 111039358 -86156074 + B3A SINE B2 33 213 -3 3 1432 551 289 14 66 chr1 111039376 111039587 -86155845 + B3 SINE B2 1 200 -16 3 1432 201 39 0 0 chr1 111039587 111039613 -86155819 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 4 1432 711 363 13 13 chr1 111039745 111040049 -86155383 - Lx7 LINE L1 -462 7234 6931 4 1432 639 273 27 21 chr1 111040182 111040369 -86155063 + MTE2a LTR MaLR 192 379 0 4 1432 4562 25 0 0 chr1 111040535 111041062 -86154370 + L1Md_A LINE L1 6054 6580 -2 4 1432 2257 227 66 34 chr1 111041099 111041691 -86153741 - RMER19C LTR ERVK 0 611 1 4 1432 4556 130 8 12 chr1 111041783 111042522 -86152910 - L1_Mus3 LINE L1 0 6638 5903 4 1432 457 208 207 8 chr1 111044990 111045111 -86150321 + B2_Mm2 SINE B2 1 145 -50 4 1432 819 61 0 0 chr1 111045111 111045225 -86150207 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 1432 14066 120 33 38 chr1 111045608 111046565 -86148867 + Lx3A LINE L1 3396 4385 -1501 4 1432 306 85 51 0 chr1 111046565 111046624 -86148808 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1432 14066 120 33 38 chr1 111046624 111046883 -86148549 + Lx3A LINE L1 4386 4644 -1242 4 1432 237 65 0 0 chr1 111046883 111046914 -86148518 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1432 14066 120 33 38 chr1 111046914 111048075 -86147357 + Lx3A LINE L1 4645 5790 -96 4 1432 902 80 80 0 chr1 111048075 111048200 -86147232 + B1_Mus1 SINE Alu 2 136 -12 5 1432 194 0 39 0 chr1 111048202 111048228 -86147204 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1432 14066 124 34 63 chr1 111048228 111048449 -86146983 + Lx3A LINE L1 5788 5987 -994 4 1432 312 94 0 0 chr1 111048466 111048519 -86146913 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1432 959 112 14 7 chr1 111048520 111048664 -86146768 - B1_Mus2 SINE Alu 0 147 3 5 1432 5411 151 42 8 chr1 111048665 111049634 -86145798 + Lx3A LINE L1 5976 6977 -4 4 1432 2226 203 51 0 chr1 111049694 111050207 -86145225 - L1_Mur1 LINE L1 -1841 4036 3498 5 1432 899 234 55 63 chr1 111050207 111050672 -86144760 + RMER2 LTR ERV1 1 567 0 5 1432 6510 50 0 2 chr1 111050715 111051520 -86143912 - L1Md_F2 LINE L1 -12 6570 5768 5 1432 284 29 0 0 chr1 111051520 111051555 -86143877 + Lx LINE L1 5731 5765 -889 5 1432 4008 193 46 92 chr1 111051552 111052911 -86142521 - L1_Mur1 LINE L1 -2384 3493 2197 5 1432 987 242 14 58 chr1 111052911 111053257 -86142175 - L1_Mur1 LINE L1 -5821 1163 833 5 1432 384 22 0 0 chr1 111053420 111053465 -86141967 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1432 499 63 12 25 chr1 111053683 111053764 -86141668 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 6 1432 1027 102 0 6 chr1 111053975 111054142 -86141290 + L1_Mus4 LINE L1 6471 6636 0 6 1432 6354 64 0 0 chr1 111054431 111055238 -86140194 + L1Md_T LINE L1 5776 6582 0 6 1432 23 68 0 0 chr1 111055430 111055474 -86139958 + AT_rich Low_complexity Low_complexity 1 44 0 6 1432 6406 143 29 43 chr1 111057710 111057727 -86137705 - Lx3A LINE L1 0 6981 6966 6 1432 372 22 0 0 chr1 111057727 111057772 -86137660 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6 1432 6406 143 29 43 chr1 111057772 111058971 -86136461 - Lx3A LINE L1 -16 6965 5783 6 1432 10965 114 24 10 chr1 111058972 111060744 -86134688 - Lx3A LINE L1 -619 5267 3471 6 1432 4372 136 35 8 chr1 111060740 111061509 -86133923 + Lx3A LINE L1 2682 3471 -2415 6 1432 489 189 0 47 chr1 111061859 111061987 -86133445 - Lx LINE L1 0 6654 6533 6 1432 1657 111 12 0 chr1 111061987 111062231 -86133201 + Lx2 LINE L1 6589 6835 -162 6 1432 24 0 0 0 chr1 111062799 111062823 -86132609 + AT_rich Low_complexity Low_complexity 1 24 0 6 1432 231 254 16 16 chr1 111063166 111063230 -86132202 + Charlie5 DNA MER1_type 2561 2624 0 6 1432 506 91 0 13 chr1 111063727 111063805 -86131627 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1432 3373 41 7 0 chr1 111063869 111064285 -86131147 + L1Md_T LINE L1 6164 6582 0 7 1432 262 358 28 9 chr1 111064470 111064577 -86130855 - B4A SINE B4 -178 114 6 7 1432 198 0 0 0 chr1 111064740 111064762 -86130670 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1432 231 383 72 53 chr1 111065115 111065377 -86130055 + MLT1D LTR MaLR 237 503 -2 7 1432 1015 93 7 0 chr1 111065679 111065819 -86129613 + B1_Mm SINE Alu 1 141 -6 7 1432 450 15 29 15 chr1 111065823 111065891 -86129541 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 7 1432 711 90 0 0 chr1 111066578 111066678 -86128754 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 1432 288 0 0 0 chr1 111066678 111066709 -86128723 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1432 232 316 0 0 chr1 111067067 111067146 -86128286 - Lx9 LINE L1 -611 7033 6955 7 1432 214 205 12 12 chr1 111067175 111067259 -86128173 + (TA)n Simple_repeat Simple_repeat 2 85 0 8 1432 463 215 215 0 chr1 111067909 111068044 -86127388 + URR1B DNA MER1_type 59 222 -3 8 1432 370 321 114 13 chr1 111068341 111068568 -86126864 - L1MD3 LINE L1 -31 7964 7715 8 1432 24 32 0 0 chr1 111068691 111068722 -86126710 + AT_rich Low_complexity Low_complexity 1 31 0 8 1432 566 392 60 8 chr1 111068893 111069274 -86126158 - Lx8 LINE L1 -159 7314 6914 8 1432 514 339 5 21 chr1 111069587 111069777 -86125655 - Lx9 LINE L1 -1059 6585 6399 7 1432 570 86 0 0 chr1 111069831 111069912 -86125520 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1432 600 126 0 0 chr1 111070603 111070722 -86124710 + (GA)n Simple_repeat Simple_repeat 2 120 0 8 1432 380 340 27 9 chr1 111070735 111070845 -86124587 - RSINE1 SINE B4 -19 146 35 8 1432 544 294 9 11 chr1 111070916 111071080 -86124352 - ORR1B1 LTR MaLR 0 394 200 8 1432 967 215 14 0 chr1 111071081 111071290 -86124142 - L1_Mm LINE L1 -495 5388 5177 8 1432 376 61 0 0 chr1 111071289 111071338 -86124094 + MusHAL1 LINE L1 1195 1243 -1469 9 1432 3019 284 58 62 chr1 111071337 111073094 -86122338 + Lx6 LINE L1 5314 7452 -8 9 1432 281 338 18 18 chr1 111073828 111073991 -86121441 - Lx7 LINE L1 -345 7351 7189 9 1432 634 315 10 93 chr1 111074046 111074347 -86121085 - Lx6 LINE L1 -177 7283 7008 9 1432 242 280 13 13 chr1 111074340 111074416 -86121016 + Lx6 LINE L1 6274 6349 -1111 9 1432 1157 295 74 12 chr1 111074414 111074833 -86120599 + Lx6 LINE L1 6477 6921 -539 9 1432 987 203 82 16 chr1 111074849 111075094 -86120338 - RLTR22_Mur LTR ERVK 0 1848 1588 9 1432 4095 163 38 23 chr1 111075365 111076163 -86119269 - RLTR22_Mur LTR ERVK -1035 813 4 9 1432 233 274 0 0 chr1 111076172 111076223 -86119209 + Lx6 LINE L1 6938 6988 -472 9 1432 312 91 0 0 chr1 111077049 111077093 -86118339 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1432 845 232 16 5 chr1 111077378 111077569 -86117863 - RMER19B LTR ERVK 0 611 419 9 1432 894 253 164 43 chr1 111077540 111077900 -86117532 - RMER19B LTR ERVK -229 673 59 9 1432 463 330 28 17 chr1 111078055 111078231 -86117201 - RMER19C LTR ERVK -14 597 420 9 1432 310 292 63 45 chr1 111078294 111078405 -86117027 - B4 SINE B4 -177 115 3 9 1432 2770 179 6 13 chr1 111078417 111078949 -86116483 - Lx LINE L1 0 6654 6127 1 1432 255 61 0 0 chr1 111078954 111078987 -86116445 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1432 1561 346 64 25 chr1 111079580 111080498 -86114934 + Lx9 LINE L1 6445 7398 -246 1 1432 4004 93 2 2 chr1 111080507 111081065 -86114367 - L1_Mm LINE L1 -849 5034 4477 1 1432 3274 68 27 2 chr1 111081065 111081508 -86113924 + L1_Mus1 LINE L1 6114 6567 0 1 1432 438 20 0 0 chr1 111081597 111081648 -86113784 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1432 1677 16 0 0 chr1 111082301 111082492 -86112940 + B2_Mm1a SINE B2 1 191 -2 1 1432 23 33 0 0 chr1 111082541 111082571 -86112861 + AT_rich Low_complexity Low_complexity 1 30 0 1 1432 557 257 111 11 chr1 111083685 111083866 -86111566 + Lx7 LINE L1 6940 7138 -558 1 1432 353 314 9 37 chr1 111083902 111084011 -86111421 + B3A SINE B2 6 111 -87 1 1432 285 317 48 32 chr1 111084028 111084152 -86111280 + B3 SINE B2 13 138 -55 1 1432 704 0 42 0 chr1 111084164 111084260 -86111172 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 1 1432 34 72 0 0 chr1 111084623 111084692 -86110740 + AT_rich Low_complexity Low_complexity 1 69 0 1 1432 26 30 0 0 chr1 111084824 111084857 -86110575 + AT_rich Low_complexity Low_complexity 1 33 0 1 1432 705 256 65 5 chr1 111084865 111085065 -86110367 - B3 SINE B2 0 216 5 1 1432 26 30 0 0 chr1 111085072 111085105 -86110327 + AT_rich Low_complexity Low_complexity 1 33 0 1 1432 39 74 0 0 chr1 111085154 111085235 -86110197 + AT_rich Low_complexity Low_complexity 1 81 0 1 1432 384 341 48 0 chr1 111085367 111085493 -86109939 + B4A SINE B4 138 269 -23 1 1432 207 0 0 0 chr1 111085738 111085761 -86109671 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1432 454 304 146 24 chr1 111085988 111086200 -86109232 - RMER13A LTR ERVK -396 464 227 1 1432 6782 122 4 21 chr1 111087837 111089134 -86106298 - L1_Mus3 LINE L1 0 6638 5365 1 1432 1865 125 17 0 chr1 111089138 111089433 -86105999 + L1_Mm LINE L1 4465 4764 -1119 1 1432 2561 184 9 22 chr1 111089436 111089971 -86105461 - L1_Mur2 LINE L1 -531 5346 4819 1 1432 5945 134 9 31 chr1 111089968 111090902 -86104530 + L1_Mm LINE L1 3827 4730 -1153 1 1432 230 0 33 0 chr1 111090902 111090932 -86104500 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1432 5945 134 9 31 chr1 111090932 111091024 -86104408 + L1_Mm LINE L1 4731 4829 -1054 1 1432 378 313 133 11 chr1 111091030 111091211 -86104221 - B3 SINE B2 -11 205 3 1 1432 285 392 34 34 chr1 111091416 111091593 -86103839 - B4A SINE B4 -14 278 102 1 1432 1847 228 24 3 chr1 111091594 111091972 -86103460 - ORR1B1 LTR MaLR -8 386 1 1 1432 1014 220 13 8 chr1 111091972 111092210 -86103222 - ORR1B1-int LTR MaLR 0 1509 1271 1 1432 5002 138 86 1 chr1 111092249 111092329 -86103103 - Lx LINE L1 -8 6646 6567 1 1432 432 0 0 0 chr1 111092329 111092377 -86103055 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 1 1432 5002 138 86 1 chr1 111092377 111093166 -86102266 - Lx LINE L1 -88 6566 5705 1 1432 191 321 74 74 chr1 111093432 111093580 -86101852 - MIR SINE MIR -28 234 87 1 1432 369 0 0 0 chr1 111093730 111093771 -86101661 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1432 1435 271 17 14 chr1 111094711 111095131 -86100301 - MTC LTR MaLR 0 421 1 1 1432 35502 53 22 5 chr1 111096528 111101712 -86093720 + L1Md_F LINE L1 331 5586 -297 1 1432 7881 55 2 0 chr1 111101712 111102705 -86092727 + L1Md_T LINE L1 5587 6581 -1 1 1432 35502 38 1 3 chr1 111102705 111102723 -86092709 + L1Md_F LINE L1 5587 5603 -280 1 1432 261 168 180 25 chr1 111102832 111102954 -86092478 - Lx9 LINE L1 0 7644 7504 1 1432 403 273 73 24 chr1 111103030 111103154 -86092278 + Lx9 LINE L1 7073 7202 -442 1 1432 507 349 36 5 chr1 111103409 111103602 -86091830 - B4A SINE B4 -51 241 43 1 1432 4155 191 20 10 chr1 111103604 111104435 -86090997 - Lx2 LINE L1 -78 5799 4960 1 1432 6343 162 34 1 chr1 111104435 111105558 -86089874 + Lx2 LINE L1 5838 6997 0 1 1432 267 265 0 17 chr1 111105569 111105635 -86089797 - B4A SINE B4 -227 65 1 1 1432 1915 193 22 17 chr1 111106041 111106452 -86088980 - Lx4A LINE L1 -6 7052 6640 1 1432 189 0 0 0 chr1 111106472 111106493 -86088939 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 1 1432 1273 67 0 6 chr1 111106493 111106666 -86088766 - L1_Mus2 LINE L1 -7 6559 6387 1 1432 522 54 3 0 chr1 111106666 111106741 -86088691 + L1_Mus2 LINE L1 6280 6356 -280 1 1432 589 233 44 29 chr1 111106752 111106889 -86088543 - Lx4A LINE L1 -429 6629 6491 1 1432 387 0 0 0 chr1 111107692 111107735 -86087697 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1432 23 33 0 0 chr1 111108389 111108419 -86087013 + AT_rich Low_complexity Low_complexity 1 30 0 1 1432 910 80 7 7 chr1 111110843 111110994 -86084438 + (TG)n Simple_repeat Simple_repeat 2 152 0 1 1432 261 0 0 0 chr1 111111024 111111053 -86084379 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1432 216 0 0 0 chr1 111111053 111111076 -86084356 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1432 728 186 16 70 chr1 111111076 111111261 -86084171 + Lx9 LINE L1 7330 7504 -140 1 1432 299 282 7 0 chr1 111111269 111111418 -86084014 + (TA)n Simple_repeat Simple_repeat 2 151 0 1 1432 607 239 21 43 chr1 111111458 111111646 -86083786 - Lx9 LINE L1 -128 7516 7333 1 1432 7345 101 0 1 chr1 111111688 111113017 -86082415 - L1_Mus2 LINE L1 -1 6565 5237 1 1432 423 146 73 0 chr1 111113017 111113099 -86082333 - Lx9 LINE L1 -296 7348 7261 1 1432 21 82 0 0 chr1 111113316 111113365 -86082067 + AT_rich Low_complexity Low_complexity 1 49 0 1 1432 1390 275 56 25 chr1 111113385 111113903 -86081529 + Lx9 LINE L1 7076 7609 -35 1 1432 31 44 0 0 chr1 111114303 111114348 -86081084 + AT_rich Low_complexity Low_complexity 1 45 0 1 1432 1004 217 15 10 chr1 111114521 111114726 -86080706 + URR1B DNA MER1_type 19 224 -1 1 1432 2270 166 14 36 chr1 111115139 111115577 -86079855 + Lx3B LINE L1 6013 6440 -533 1 1432 2066 155 23 10 chr1 111115583 111115980 -86079452 + Lx3B LINE L1 6565 6966 -7 1 1432 22 56 0 0 chr1 111116006 111116042 -86079390 + AT_rich Low_complexity Low_complexity 1 36 0 1 1432 1147 40 20 0 chr1 111116284 111116436 -86078996 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1 1432 207 0 0 0 chr1 111116860 111116883 -86078549 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1432 222 37 0 0 chr1 111119562 111119589 -86075843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1432 678 13 0 0 chr1 111120148 111120227 -86075205 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 1 1432 531 0 0 0 chr1 111121872 111121931 -86073501 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1432 480 48 0 0 chr1 111121931 111121993 -86073439 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1432 6642 213 12 12 chr1 111122115 111123480 -86071952 + Lx4B LINE L1 5587 6951 -107 1 1432 295 125 54 0 chr1 111123494 111123550 -86071882 + RMER19C LTR ERVK 1 59 -552 1 1432 1053 230 30 131 chr1 111123538 111123843 -86071589 + RMER19C LTR ERVK 224 497 -114 1 1432 885 338 62 54 chr1 111124243 111124931 -86070501 - Lx8 LINE L1 -29 7444 6751 1 1432 357 127 50 12 chr1 111125660 111125740 -86069692 + L1Md_F3 LINE L1 6498 6580 -4 1 1432 22 0 0 0 chr1 111125740 111125762 -86069670 + AT_rich Low_complexity Low_complexity 1 22 0 1 1432 672 201 72 0 chr1 111125943 111126082 -86069350 + RodERV21-int LTR ERV1 1951 2099 -2892 1 1432 4832 87 99 1 chr1 111126559 111127309 -86068123 - RLTR22_Mus LTR ERVK -985 823 1 1 1432 1299 263 9 49 chr1 111127312 111127656 -86067776 + RodERV21-int LTR ERV1 2118 2447 -2544 1 1432 234 0 0 0 chr1 111127703 111127729 -86067703 + (TCC)n Simple_repeat Simple_repeat 1 26 0 1 1432 507 376 31 4 chr1 111127981 111128240 -86067192 + Lx8 LINE L1 6991 7256 -217 1 1432 412 156 11 11 chr1 111128438 111128529 -86066903 + CT-rich Low_complexity Low_complexity 3 93 0 1 1432 5700 159 26 24 chr1 111128530 111129597 -86065835 - Lx2 LINE L1 -4 6993 5925 1 1432 1166 361 90 24 chr1 111129902 111130940 -86064492 + Lx8 LINE L1 6300 7405 -68 1 1432 212 305 10 50 chr1 111133221 111133321 -86062111 + GA-rich Low_complexity Low_complexity 4 99 0 1 1432 237 119 0 0 chr1 111134287 111134329 -86061103 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1432 561 30 0 0 chr1 111134380 111134447 -86060985 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1432 30 45 0 0 chr1 111134533 111134577 -86060855 + AT_rich Low_complexity Low_complexity 1 44 0 1 1432 849 176 79 6 chr1 111135511 111135688 -86059744 - Lx LINE L1 -1 6653 6464 1 1432 1089 63 7 0 chr1 111136402 111136544 -86058888 + B1_Mus2 SINE Alu 5 147 0 1 1432 24 53 0 0 chr1 111136572 111136610 -86058822 + AT_rich Low_complexity Low_complexity 1 38 0 1 1432 391 341 173 19 chr1 111136729 111136995 -86058437 + MTE-int LTR MaLR 552 858 -722 1 1432 287 91 38 25 chr1 111137001 111137080 -86058352 + A-rich Low_complexity Low_complexity 3 82 0 1 1432 468 343 152 7 chr1 111137178 111137448 -86057984 + ORR1E LTR MaLR 3 311 -48 1 1432 1095 88 7 0 chr1 111138294 111138441 -86056991 + B1_Mus1 SINE Alu 1 148 0 1 1432 777 203 7 14 chr1 111138812 111138957 -86056475 + B1_Mur3 SINE Alu 3 146 -3 1 1432 596 14 14 0 chr1 111138962 111139035 -86056397 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1 1432 449 317 76 14 chr1 111139091 111139302 -86056130 + Lx8 LINE L1 7245 7468 -5 1 1432 523 333 14 0 chr1 111139898 111140042 -86055390 - B3A SINE B2 -51 147 2 1 1432 585 281 137 14 chr1 111141040 111141332 -86054100 - Lx6 LINE L1 0 7460 7133 1 1432 294 173 0 0 chr1 111141345 111141420 -86054012 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 1 1432 1110 76 7 0 chr1 111141431 111141576 -86053856 - B1_Mus1 SINE Alu -2 146 1 1 1432 5359 233 30 29 chr1 111141576 111143080 -86052352 - L1_Mur3 LINE L1 -82 5798 4291 1 1432 5380 156 29 0 chr1 111143105 111144033 -86051399 - Lx2 LINE L1 -6 6991 6037 1 1432 281 241 25 0 chr1 111144138 111144217 -86051215 + Lx9 LINE L1 7533 7613 -31 1 1432 1887 259 34 5 chr1 111144217 111144629 -86050803 - Lx9 LINE L1 -139 7505 7080 1 1432 423 0 0 0 chr1 111144629 111144676 -86050756 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 1 1432 1887 259 34 5 chr1 111144676 111144825 -86050607 - Lx9 LINE L1 -565 7079 6929 1 1432 398 191 0 0 chr1 111144841 111144909 -86050523 - Lx9 LINE L1 -773 6871 6804 1 1432 216 64 0 60 chr1 111145641 111145691 -86049741 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1432 29 0 0 0 chr1 111145817 111145846 -86049586 + AT_rich Low_complexity Low_complexity 1 29 0 1 1432 398 304 31 47 chr1 111145858 111146051 -86049381 - B3A SINE B2 -6 192 3 2 1432 346 277 34 59 chr1 111146269 111146388 -86049044 + RSINE1 SINE B4 14 129 -36 2 1432 284 184 0 22 chr1 111146413 111146502 -86048930 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 2 1432 9153 84 1 1 chr1 111146533 111147803 -86047629 + L1Md_T LINE L1 3370 4639 -1244 2 1432 721 84 0 0 chr1 111147802 111147897 -86047535 + L1Md_T LINE L1 4906 5000 -883 2 22 35792 35 4 8 chr1 111147896 111153060 -86042372 + L1Md_T LINE L1 449 5586 -297 2 1433 8212 41 1 1 chr1 111153060 111154056 -86041376 + L1Md_T LINE L1 5587 6582 0 2 1433 4512 64 3 3 chr1 111154056 111154651 -86040781 + L1Md_T LINE L1 4992 5586 -297 2 1433 8329 36 1 1 chr1 111154651 111155647 -86039785 + L1Md_T LINE L1 5587 6582 0 2 1433 4815 80 36 0 chr1 111155648 111156307 -86039125 + L1Md_F2 LINE L1 4992 5674 -209 2 1433 4714 94 82 14 chr1 111156307 111157018 -86038414 + L1Md_F2 LINE L1 5805 6563 -19 2 1433 1071 117 0 0 chr1 111158524 111158669 -86036763 - B1_Mus1 SINE Alu -1 147 3 2 1433 5481 171 35 2 chr1 111158675 111159667 -86035765 - Lx2 LINE L1 -1 6996 5972 2 1433 1727 209 26 29 chr1 111159670 111160089 -86035343 - L1VL4 LINE L1 -640 5246 4829 2 1433 2699 182 28 5 chr1 111160085 111160654 -86034778 - L1VL4 LINE L1 -1464 4413 3832 2 1433 315 49 16 47 chr1 111160654 111160718 -86034714 + (TTTTTG)n Simple_repeat Simple_repeat 2 63 0 2 1433 38489 35 3 7 chr1 111160783 111166978 -86028454 - L1Md_T LINE L1 -1 6581 416 2 1433 13094 150 18 9 chr1 111166979 111168790 -86026642 - L1VL4 LINE L1 -2036 3850 2021 2 1433 216 0 0 0 chr1 111168790 111168814 -86026618 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1433 13094 147 19 88 chr1 111168814 111169634 -86025798 - L1VL4 LINE L1 -1894 2020 1204 2 1433 838 69 2 11 chr1 111169634 111169764 -86025668 - B1_Mm SINE Alu -20 129 1 2 1433 13094 147 19 88 chr1 111169764 111170281 -86025151 - L1VL4 LINE L1 -1894 1203 687 2 1433 523 219 16 149 chr1 111170273 111170461 -86024971 - L1VL4 LINE L1 -5868 789 627 2 1433 202 253 12 12 chr1 111170532 111170616 -86024816 + CT-rich Low_complexity Low_complexity 3 86 0 2 1433 644 292 72 18 chr1 111171211 111171434 -86023998 - MT2A LTR ERVL -203 330 96 2 1433 1622 127 43 25 chr1 111172287 111172569 -86022863 - L1_Mus4 LINE L1 -1 6635 6349 2 1433 220 389 71 44 chr1 111173322 111173435 -86021997 + RSINE1 SINE B4 17 132 -33 2 1433 23 78 0 0 chr1 111173696 111173747 -86021685 + AT_rich Low_complexity Low_complexity 1 51 0 2 1433 228 86 0 0 chr1 111173903 111173938 -86021494 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1433 253 374 40 10 chr1 111173992 111174092 -86021340 + PB1D10 SINE Alu 1 103 -46 2 1433 278 221 73 40 chr1 111174092 111174243 -86021189 + Lx9 LINE L1 7488 7643 -1 2 1433 271 157 58 35 chr1 111174938 111175024 -86020408 + T-rich Low_complexity Low_complexity 4 91 0 2 1433 486 0 0 0 chr1 111175922 111175976 -86019456 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1433 265 388 15 8 chr1 111176942 111177072 -86018360 + RSINE1 SINE B4 4 134 -31 2 1433 8311 30 1 0 chr1 111177195 111178249 -86017183 - L1Md_T LINE L1 -1 6581 5527 2 1433 2714 162 58 8 chr1 111178249 111178748 -86016684 + Lx3B LINE L1 6448 6971 -2 2 1433 307 244 24 24 chr1 111180340 111180424 -86015008 + RMER15 LTR ERVL 492 575 0 2 1433 354 349 35 62 chr1 111180459 111180685 -86014747 - MT2A LTR ERVL -187 346 127 2 1433 252 0 0 0 chr1 111181968 111181996 -86013436 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1433 1366 228 31 24 chr1 111181996 111182288 -86013144 + RMER19B LTR ERVK 357 650 -252 2 1433 22 35 0 0 chr1 111183102 111183131 -86012301 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 333 0 0 0 chr1 111184212 111184249 -86011183 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1433 216 237 0 0 chr1 111184291 111184329 -86011103 - B3A SINE B2 -121 77 40 2 1433 30 45 0 0 chr1 111184339 111184383 -86011049 + AT_rich Low_complexity Low_complexity 1 44 0 2 1433 29 0 0 0 chr1 111184436 111184465 -86010967 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 300 172 0 0 chr1 111185750 111185808 -86009624 + (CAT)n Simple_repeat Simple_repeat 3 60 0 2 1433 210 275 141 11 chr1 111185834 111185926 -86009506 + PB1 SINE Alu 22 125 -2 2 1433 2550 173 58 10 chr1 111186009 111186493 -86008939 - Lx LINE L1 -5 6649 6143 2 1433 7174 158 8 2 chr1 111186496 111188084 -86007348 + Lx LINE L1 4559 6154 -500 2 1433 6490 129 54 9 chr1 111188541 111189586 -86005846 - Lx3_Mus LINE L1 -8 7001 5908 2 1433 294 29 0 0 chr1 111189586 111189621 -86005811 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2 1433 6490 129 54 9 chr1 111189621 111189656 -86005776 - Lx3_Mus LINE L1 -1102 5907 5873 2 1433 753 88 0 66 chr1 111189656 111189778 -86005654 + L1_Mur1 LINE L1 5117 5230 -656 2 1433 1933 193 19 38 chr1 111189776 111190201 -86005231 + L1_Mm LINE L1 4518 4934 -949 2 1433 216 0 0 0 chr1 111190208 111190232 -86005200 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 1433 393 212 0 0 chr1 111190243 111190323 -86005109 - L1_Mur2 LINE L1 -716 5161 5082 2 1433 1272 140 57 0 chr1 111190326 111190554 -86004878 - L1_Mur1 LINE L1 -6068 914 674 2 1433 1012 241 78 72 chr1 111190578 111190913 -86004519 - L1_Mur1 LINE L1 -6617 365 29 2 1433 3793 166 42 12 chr1 111191014 111191759 -86003673 - Lx LINE L1 -7 6647 5881 2 1433 1528 171 0 4 chr1 111191776 111192046 -86003386 + L1_Mur1 LINE L1 4933 5201 -685 2 1433 252 0 0 0 chr1 111192805 111192833 -86002599 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 1433 669 314 44 84 chr1 111193004 111193412 -86002020 + MTE2a LTR MaLR 3 362 -17 2 1433 21 0 0 0 chr1 111193501 111193522 -86001910 + AT_rich Low_complexity Low_complexity 1 21 0 2 1433 30 69 0 0 chr1 111193788 111193846 -86001586 + AT_rich Low_complexity Low_complexity 1 58 0 2 1433 575 351 52 0 chr1 111193954 111194145 -86001287 + ID_B1 SINE B4 3 203 -21 2 1433 789 277 78 36 chr1 111195521 111195880 -85999552 + ORR1D1 LTR MaLR 1 374 0 2 1433 310 225 9 9 chr1 111195932 111196044 -85999388 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 1433 249 159 0 0 chr1 111197019 111197082 -85998350 + A-rich Low_complexity Low_complexity 1 63 0 2 1433 249 33 0 0 chr1 111197423 111197453 -85997979 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1433 500 268 62 62 chr1 111198222 111198433 -85996999 - B3 SINE B2 -2 214 4 2 1433 28 0 0 0 chr1 111198618 111198646 -85996786 + AT_rich Low_complexity Low_complexity 1 28 0 2 1433 377 20 0 20 chr1 111198981 111199032 -85996400 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 1433 1397 241 71 29 chr1 111199053 111199433 -85995999 + MTD LTR MaLR 11 406 -13 2 1433 599 331 37 11 chr1 111199658 111199847 -85995585 - ID_B1 SINE B4 -25 199 6 2 1433 927 51 0 0 chr1 111200322 111200439 -85994993 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 2 1433 282 56 0 0 chr1 111201077 111201113 -85994319 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1433 1611 267 22 15 chr1 111201114 111201609 -85993823 + L1_Mur3 LINE L1 904 1406 -4471 2 1433 4267 150 11 7 chr1 111201609 111202314 -85993118 + Lx LINE L1 5945 6652 -2 2 1433 1611 219 18 31 chr1 111202314 111202566 -85992866 + L1_Mur3 LINE L1 1407 1654 -4223 2 1433 3487 143 25 2 chr1 111202587 111203139 -85992293 + Lx3B LINE L1 6048 6612 -361 2 1433 844 172 64 0 chr1 111203138 111203295 -85992137 + Lx3B LINE L1 6807 6973 0 2 1433 6971 219 47 52 chr1 111203332 111203357 -85992075 + L1_Mur3 LINE L1 3532 3556 -2321 2 1433 342 0 0 0 chr1 111203357 111203395 -85992037 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1433 6971 219 47 52 chr1 111203395 111204772 -85990660 + L1_Mur3 LINE L1 3557 4892 -985 2 1433 450 0 0 0 chr1 111204772 111204822 -85990610 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1433 6971 219 47 52 chr1 111204822 111205362 -85990070 + L1_Mur3 LINE L1 4893 5464 -413 2 1433 728 314 34 52 chr1 111205405 111205731 -85989701 + Lx6 LINE L1 7112 7431 -29 2 1433 25 0 0 0 chr1 111205731 111205756 -85989676 + AT_rich Low_complexity Low_complexity 1 25 0 2 1433 476 32 16 0 chr1 111205806 111205868 -85989564 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1433 258 247 57 34 chr1 111206259 111206347 -85989085 - Lx8 LINE L1 -540 6933 6844 2 1433 278 265 65 22 chr1 111206362 111206501 -85988931 + Lx9 LINE L1 7352 7496 -148 2 1433 229 325 12 48 chr1 111206583 111206667 -85988765 - Lx8 LINE L1 -1131 6342 6262 2 1433 3800 88 6 0 chr1 111207052 111207572 -85987860 + L1_Mus2 LINE L1 6041 6563 -3 2 1433 303 28 0 0 chr1 111207762 111207798 -85987634 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1433 686 55 0 22 chr1 111208079 111208171 -85987261 - ORR1A1 LTR MaLR 0 346 257 2 1433 840 9 0 9 chr1 111208164 111208279 -85987153 - ORR1A1 LTR MaLR -232 114 1 2 1433 13494 67 6 1 chr1 111208279 111210062 -85985370 - ORR1A1-int LTR MaLR 0 1792 1 2 1433 2724 69 0 0 chr1 111210062 111210408 -85985024 - ORR1A1 LTR MaLR 0 346 1 2 1433 23 54 0 0 chr1 111210547 111210584 -85984848 + AT_rich Low_complexity Low_complexity 1 37 0 2 1433 1331 342 52 29 chr1 111210721 111211473 -85983959 - Lx8 LINE L1 -359 7114 6346 2 1433 4523 96 8 1 chr1 111211538 111212185 -85983247 - L1_Mus3 LINE L1 -5 6633 5983 2 1433 238 163 23 0 chr1 111212228 111212271 -85983161 + L1VL4 LINE L1 756 799 -3116 2 1433 2611 159 44 32 chr1 111212239 111212971 -85982461 + L1VL4 LINE L1 685 1426 -2488 2 1433 3259 104 103 25 chr1 111212969 111213245 -85982187 - Lx3A LINE L1 -790 6191 5909 2 1433 720 35 0 0 chr1 111213245 111213332 -85982100 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1433 3259 104 103 25 chr1 111213332 111213379 -85982053 - Lx3A LINE L1 -1073 5908 5868 2 1433 2961 47 8 38 chr1 111213379 111213779 -85981653 + RLTR10 LTR ERVK 1 388 -2 2 1433 3259 109 76 18 chr1 111213779 111214101 -85981331 - Lx3A LINE L1 -1114 5867 5504 2 1433 3736 171 52 26 chr1 111214101 111214538 -85980894 + Lx3A LINE L1 6228 6693 -288 2 1433 244 0 27 27 chr1 111214544 111214581 -85980851 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1433 1038 87 0 14 chr1 111214581 111214714 -85980718 - B1_Mus2 SINE Alu -10 137 5 2 1433 3736 171 52 26 chr1 111214714 111215008 -85980424 + Lx3A LINE L1 6694 6978 -3 2 1433 10017 150 15 68 chr1 111215037 111217232 -85978200 + L1VL4 LINE L1 1401 3479 -435 2 1433 1070 96 0 27 chr1 111217232 111217369 -85978063 + B1_Mm SINE Alu 1 135 -12 2 1433 314 0 49 0 chr1 111217369 111217410 -85978022 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1433 1070 96 0 27 chr1 111217410 111217422 -85978010 + B1_Mm SINE Alu 136 146 -1 2 1433 10017 164 17 105 chr1 111217422 111217460 -85977972 + L1VL4 LINE L1 3475 3507 -407 2 1433 1145 99 0 0 chr1 111217460 111217631 -85977801 - L1_Mus2 LINE L1 0 6566 6396 2 1433 7230 200 22 196 chr1 111217631 111218137 -85977295 + L1VL4 LINE L1 3492 3558 -2319 2 1433 345 47 0 0 chr1 111218137 111218180 -85977252 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1433 7230 200 22 196 chr1 111218180 111218450 -85976982 + L1VL4 LINE L1 3559 3824 -2053 2 1433 833 68 8 0 chr1 111218450 111218567 -85976865 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 1433 7230 200 22 196 chr1 111218567 111218837 -85976595 + L1VL4 LINE L1 3825 4117 -1760 2 1433 6204 153 49 3 chr1 111218834 111219894 -85975538 + Lx2 LINE L1 5622 6730 -267 2 1433 935 166 6 6 chr1 111219896 111220066 -85975366 + Lx LINE L1 6479 6648 -6 2 1433 593 180 8 0 chr1 111220324 111220452 -85974980 + (TA)n Simple_repeat Simple_repeat 2 130 0 2 1433 444 37 0 0 chr1 111220678 111220732 -85974700 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2 1433 429 179 9 112 chr1 111221105 111221212 -85974220 + MT2B LTR ERVL 169 264 -337 2 1433 967 64 0 0 chr1 111221116 111221241 -85974191 + B1_Mm SINE Alu 17 141 -6 2 1433 27 0 0 0 chr1 111221244 111221271 -85974161 + AT_rich Low_complexity Low_complexity 1 27 0 2 1433 230 247 32 96 chr1 111222014 111222108 -85973324 + MURVY-LTR LTR ERV1 351 438 -81 2 1433 250 315 101 9 chr1 111222423 111222532 -85972900 + MLT1A1 LTR MaLR 249 367 -41 2 1433 2767 85 16 3 chr1 111222932 111223320 -85972112 + L1_Mus3 LINE L1 6242 6634 -4 3 1433 250 408 107 0 chr1 111223803 111223972 -85971460 - MER21B LTR ERV1 -58 805 619 3 1433 2092 145 77 33 chr1 111223979 111224371 -85971061 - RLTR9E LTR ERVK 0 409 1 3 1433 459 82 27 27 chr1 111224371 111224446 -85970986 - MMETn-int LTR ERVK -1 7405 7331 3 1433 1792 188 14 35 chr1 111224641 111225266 -85970166 - MMETn-int LTR ERVK -1703 3141 2873 3 1433 4175 82 9 12 chr1 111225266 111225832 -85969600 - LTRIS2 LTR ERV1 0 564 1 3 1433 1792 223 24 60 chr1 111225832 111226098 -85969334 - MMETn-int LTR ERVK -1972 2872 2696 3 1433 186 143 0 0 chr1 111226354 111226389 -85969043 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 1433 186 103 0 0 chr1 111226386 111226415 -85969017 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1433 301 257 90 7 chr1 111226627 111226772 -85968660 + L1_Mur3 LINE L1 5284 5440 -440 3 1433 432 0 0 0 chr1 111226772 111226820 -85968612 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 3 1433 1264 224 99 48 chr1 111226820 111227232 -85968200 + Lx9 LINE L1 6916 7348 -296 3 1433 330 318 7 52 chr1 111227257 111227393 -85968039 + Lx8 LINE L1 6412 6541 -932 3 1433 366 232 145 25 chr1 111227415 111227574 -85967858 + Lx2B LINE L1 6813 6990 -10 3 1433 198 103 0 0 chr1 111227616 111227645 -85967787 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1433 274 312 101 0 chr1 111227647 111227756 -85967676 + Lx7 LINE L1 6550 6669 -1027 3 1433 21 57 0 0 chr1 111228106 111228141 -85967291 + AT_rich Low_complexity Low_complexity 1 35 0 3 1433 1014 77 14 7 chr1 111228803 111228947 -85966485 - B1_Mus2 SINE Alu -1 146 2 3 1433 370 304 17 0 chr1 111229235 111229350 -85966082 - B3 SINE B2 0 216 100 3 1433 2330 197 57 6 chr1 111229354 111229844 -85965588 + Lx2B LINE L1 5616 6130 -870 3 1433 7017 129 27 19 chr1 111229837 111231026 -85964406 + L1_Mur1 LINE L1 4505 5702 -184 3 1433 10150 29 2 1 chr1 111231025 111232229 -85963203 + L1Md_T LINE L1 4382 5586 -297 3 1433 8376 33 1 0 chr1 111232229 111233224 -85962208 + L1Md_T LINE L1 5587 6582 0 3 1433 294 95 0 0 chr1 111233273 111233315 -85962117 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1433 4435 72 8 3 chr1 111233371 111233974 -85961458 + L1Md_F3 LINE L1 5963 6568 -16 3 1433 7841 144 19 1 chr1 111233979 111234628 -85960804 + L1_Mus3 LINE L1 4575 5227 -656 3 1433 737 81 32 0 chr1 111234628 111234751 -85960681 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 1433 7841 122 10 2 chr1 111234751 111236132 -85959300 + L1_Mus3 LINE L1 5228 6631 -7 3 1433 21 0 0 0 chr1 111236132 111236153 -85959279 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 950 167 0 6 chr1 111236221 111236402 -85959030 + GA-rich Low_complexity Low_complexity 1 180 0 3 1433 28 48 0 0 chr1 111237334 111237376 -85958056 + AT_rich Low_complexity Low_complexity 1 42 0 3 1433 25 31 0 0 chr1 111238114 111238146 -85957286 + AT_rich Low_complexity Low_complexity 1 32 0 3 1433 3685 135 13 18 chr1 111238153 111238764 -85956668 - Lx3A LINE L1 0 6981 6374 3 1433 2274 121 52 24 chr1 111238758 111239140 -85956292 - L1_Mus3 LINE L1 0 6638 6246 3 1433 2794 139 36 2 chr1 111239140 111239617 -85955815 - Lx3A LINE L1 -611 6370 5878 3 1433 23 68 0 0 chr1 111239658 111239702 -85955730 + AT_rich Low_complexity Low_complexity 1 44 0 3 1433 26 88 0 0 chr1 111239958 111240026 -85955406 + AT_rich Low_complexity Low_complexity 1 68 0 3 1433 37667 46 0 3 chr1 111240046 111246476 -85948956 - L1Md_T LINE L1 0 6585 77 3 1433 1889 247 18 13 chr1 111246556 111246949 -85948483 - Lx5 LINE L1 -3 7047 6653 3 1433 424 258 0 0 chr1 111246951 111247044 -85948388 + Lx5 LINE L1 6276 6368 -682 3 1433 467 342 26 41 chr1 111247231 111247426 -85948006 + B3A SINE B2 6 197 -1 3 1433 468 51 0 0 chr1 111247755 111247814 -85947618 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1433 387 119 0 0 chr1 111247817 111247884 -85947548 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1433 239 365 14 9 chr1 111247939 111248149 -85947283 + L1M2 LINE L1 5377 5587 -725 3 1433 1322 332 37 61 chr1 111248170 111248927 -85946505 + Lx7 LINE L1 6674 7412 -284 3 1433 27 29 0 0 chr1 111249039 111249073 -85946359 + AT_rich Low_complexity Low_complexity 1 34 0 3 1433 494 136 136 0 chr1 111249551 111249661 -85945771 - L1_Mur2 LINE L1 -972 4905 4781 3 1433 1937 230 119 4 chr1 111249664 111250170 -85945262 + Lx4B LINE L1 6219 6782 -276 3 1433 41 36 0 0 chr1 111250269 111250324 -85945108 + AT_rich Low_complexity Low_complexity 1 55 0 3 1433 294 29 0 0 chr1 111250815 111250850 -85944582 + (CAG)n Simple_repeat Simple_repeat 2 36 0 3 1433 312 320 67 57 chr1 111251020 111251229 -85944203 + L1MCb LINE L1 900 1110 -4935 3 1433 1071 152 22 5 chr1 111251377 111251562 -85943870 + B2_Mm1t SINE B2 2 189 -4 3 1433 256 270 0 0 chr1 111251779 111251842 -85943590 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 1433 216 220 10 81 chr1 111251872 111251971 -85943461 + A-rich Low_complexity Low_complexity 3 94 0 3 1433 324 70 0 0 chr1 111252121 111252164 -85943268 + (ATG)n Simple_repeat Simple_repeat 3 45 0 3 1433 396 351 52 20 chr1 111252326 111252576 -85942856 + Lx8 LINE L1 6460 6717 -756 3 1433 674 306 75 26 chr1 111252670 111253014 -85942418 - RLTR40 LTR ERVK -6 811 502 3 1433 1014 243 77 7 chr1 111253035 111253333 -85942099 - RLTR40 LTR ERVK -466 351 33 3 1433 625 299 22 5 chr1 111253456 111253641 -85941791 + Lx8 LINE L1 7153 7340 -133 3 1433 306 0 0 0 chr1 111253722 111253756 -85941676 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1433 1376 164 74 27 chr1 111253767 111253872 -85941560 - ORR1A2 LTR MaLR -58 269 156 3 1433 2848 113 42 35 chr1 111253872 111254351 -85941081 + RLTR45 LTR ERVK 1 482 0 3 1433 1376 164 74 27 chr1 111254351 111254502 -85940930 - ORR1A2 LTR MaLR -172 155 1 3 1433 221 119 0 23 chr1 111254814 111254857 -85940575 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1433 1035 53 40 0 chr1 111254916 111255068 -85940364 + (GAAAA)n Simple_repeat Simple_repeat 3 160 0 3 1433 624 323 30 11 chr1 111255086 111255352 -85940080 + Lx6 LINE L1 5976 6246 -1214 3 1433 1718 217 21 18 chr1 111255367 111255747 -85939685 - RLTR16 LTR ERVK 0 505 125 3 1433 2105 241 132 8 chr1 111255753 111256351 -85939081 + Lx6 LINE L1 6282 6953 -507 3 1433 1333 238 78 14 chr1 111256344 111256398 -85939034 + Lx6 LINE L1 7056 7109 -351 3 1433 582 75 0 0 chr1 111256398 111256478 -85938954 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 3 1433 1333 238 78 14 chr1 111256478 111256794 -85938638 + Lx6 LINE L1 7110 7449 -11 3 1433 216 0 0 0 chr1 111257187 111257211 -85938221 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1433 766 260 73 32 chr1 111257481 111257795 -85937637 + Lx9 LINE L1 7317 7643 -1 3 1433 21 0 0 0 chr1 111258539 111258560 -85936872 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 22 35 0 0 chr1 111258593 111258622 -85936810 + AT_rich Low_complexity Low_complexity 1 29 0 3 1433 512 99 0 52 chr1 111259348 111259444 -85935988 - L1_Mus2 LINE L1 -1 6565 6475 3 1433 211 341 79 31 chr1 111259820 111259947 -85935485 - B1F1 SINE Alu 0 149 17 3 1433 437 301 40 8 chr1 111260357 111260481 -85934951 + B3 SINE B2 77 204 -12 3 1433 189 0 0 0 chr1 111260481 111260502 -85934930 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3 1433 25 0 0 0 chr1 111260512 111260537 -85934895 + AT_rich Low_complexity Low_complexity 1 25 0 3 1433 1814 312 56 26 chr1 111260541 111261410 -85934022 - Lx9 LINE L1 -20 7624 6730 3 1433 225 179 54 0 chr1 111261819 111261875 -85933557 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 3 1433 389 179 13 0 chr1 111262017 111262095 -85933337 - ORR1C2 LTR MaLR 0 384 306 3 1433 1721 166 85 62 chr1 111262095 111262532 -85932900 - LTRIS5 LTR ERV1 0 447 1 3 1433 1275 194 62 62 chr1 111262532 111262840 -85932592 - ORR1C2 LTR MaLR -76 308 1 3 1433 2159 241 36 11 chr1 111262844 111263393 -85932039 - ORR1C2-int LTR MaLR -4 1505 943 3 1433 689 295 30 73 chr1 111263417 111263717 -85931715 - ORR1C2-int LTR MaLR -622 748 462 3 1433 3150 121 14 31 chr1 111263717 111264228 -85931204 - Lx3_Mus LINE L1 -5 7004 6503 3 1433 21 57 0 0 chr1 111264795 111264830 -85930602 + AT_rich Low_complexity Low_complexity 1 35 0 3 1433 560 289 91 40 chr1 111264892 111264942 -85930490 + B3 SINE B2 9 68 -148 3 1433 4353 52 0 11 chr1 111264942 111265492 -85929940 - L1Md_F3 LINE L1 0 6584 6041 3 1433 560 289 91 40 chr1 111265492 111265639 -85929793 + B3 SINE B2 69 216 0 3 1433 2749 67 0 0 chr1 111267415 111267773 -85927659 - L1Md_T LINE L1 0 6582 6225 3 1433 183 80 0 0 chr1 111267926 111267951 -85927481 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1433 1243 335 106 21 chr1 111268043 111268937 -85926495 + Lx8 LINE L1 6258 7227 -246 3 1433 444 254 26 26 chr1 111269160 111269277 -85926155 - ORR1E LTR MaLR -242 117 1 3 1433 2856 74 50 0 chr1 111269992 111270371 -85925061 - MTB LTR MaLR -2 398 1 3 1433 1178 156 33 8 chr1 111270371 111270616 -85924816 - MTB-int LTR MaLR 0 1098 848 3 1433 307 350 67 0 chr1 111270717 111270837 -85924595 - B1F SINE Alu -17 132 5 3 1433 6475 117 41 5 chr1 111270889 111271000 -85924432 - Lx LINE L1 -7 6647 6538 3 1433 384 22 0 0 chr1 111271000 111271045 -85924387 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1433 6475 117 41 5 chr1 111271045 111271938 -85923494 - Lx LINE L1 -117 6537 5609 3 1433 3675 172 3 0 chr1 111271937 111272583 -85922849 + Lx LINE L1 4958 5605 -278 3 1433 22 56 0 0 chr1 111272763 111272799 -85922633 + AT_rich Low_complexity Low_complexity 1 36 0 3 1433 227 204 0 0 chr1 111273148 111273197 -85922235 - L1M5 LINE L1 -634 5810 5762 3 1433 231 415 50 32 chr1 111273282 111273501 -85921931 + MLT1H1 LTR MaLR 73 295 -260 3 1433 279 0 0 0 chr1 111273716 111273747 -85921685 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1433 26046 96 5 2 chr1 111274015 111279212 -85916220 + L1Md_F LINE L1 374 5623 -619 3 179 7205 83 1 18 chr1 111279212 111280213 -85915219 + L1Md_F2 LINE L1 5587 6570 -12 3 1434 1046 267 40 15 chr1 111280213 111280256 -85915176 + L1Md_F LINE L1 5624 5666 -576 3 1434 22 0 0 0 chr1 111280260 111280282 -85915150 + AT_rich Low_complexity Low_complexity 1 22 0 3 1434 302 366 59 10 chr1 111280331 111280535 -85914897 + MLT1F-int LTR MaLR 576 789 -700 3 1434 272 133 51 39 chr1 111280538 111280616 -85914816 - L1_Mur2 LINE L1 -5947 765 687 3 1434 5895 206 58 55 chr1 111280603 111281877 -85913555 + Lx5 LINE L1 1896 3165 -2712 3 1434 198 0 0 0 chr1 111281877 111281899 -85913533 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1434 5895 206 58 55 chr1 111281899 111282209 -85913223 + Lx5 LINE L1 3166 3460 -2417 3 1434 198 0 0 0 chr1 111282209 111282231 -85913201 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 3 1434 5895 206 58 55 chr1 111282231 111282277 -85913155 + Lx5 LINE L1 3461 3538 -2339 3 1434 234 0 0 0 chr1 111282277 111282303 -85913129 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1434 5895 206 58 55 chr1 111282303 111282350 -85913082 + Lx5 LINE L1 3539 3582 -2295 3 1434 2318 149 50 33 chr1 111282350 111282773 -85912659 + RLTR23 LTR ERV1 1 430 0 3 1434 5895 206 58 55 chr1 111282773 111283029 -85912403 + Lx5 LINE L1 3583 3837 -2040 3 1434 650 68 0 0 chr1 111283063 111283151 -85912281 + B1_Mm SINE Alu 54 141 -6 3 1434 613 36 24 0 chr1 111283153 111283237 -85912195 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3 1434 22 35 0 0 chr1 111283243 111283272 -85912160 + AT_rich Low_complexity Low_complexity 1 29 0 4 1434 2347 201 43 0 chr1 111283287 111283754 -85911678 - RLTR11A2 LTR ERVK -39 488 2 4 1434 1759 201 37 3 chr1 111283757 111284140 -85911292 + Lx5 LINE L1 3835 4230 -1647 3 1434 270 0 0 0 chr1 111284140 111284170 -85911262 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1434 25862 83 4 4 chr1 111284297 111288631 -85906801 - L1Md_F2 LINE L1 -1 6581 2249 4 1434 6334 222 47 15 chr1 111288628 111289832 -85905600 + Lx5 LINE L1 4214 5437 -440 3 1434 405 0 0 0 chr1 111289832 111289877 -85905555 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1434 6334 239 70 9 chr1 111289877 111291203 -85904229 + Lx5 LINE L1 5438 6890 -160 3 1434 732 293 20 12 chr1 111291475 111291727 -85903705 - Lx7 LINE L1 -501 7195 6942 4 1434 1865 242 25 40 chr1 111291717 111292165 -85903267 + Lx5 LINE L1 6607 7047 -3 4 1434 667 263 13 114 chr1 111292322 111292558 -85902874 - B3 SINE B2 -4 212 1 4 1434 267 237 0 0 chr1 111292558 111292634 -85902798 + T-rich Low_complexity Low_complexity 2 77 0 4 1434 336 98 12 47 chr1 111292782 111292868 -85902564 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 4 1434 293 0 27 0 chr1 111293692 111293729 -85901703 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 1434 1039 92 0 7 chr1 111293729 111293872 -85901560 - B1_Mm SINE Alu -4 143 2 4 1434 284 208 0 38 chr1 111294001 111294081 -85901351 - Lx3B LINE L1 -1 6972 6896 4 1434 516 32 0 0 chr1 111294094 111294156 -85901276 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1434 1526 299 41 8 chr1 111294335 111294868 -85900564 - Lx9 LINE L1 -176 7468 6918 4 1434 21 0 0 0 chr1 111295961 111295982 -85899450 + AT_rich Low_complexity Low_complexity 1 21 0 4 1434 401 164 0 0 chr1 111297122 111297195 -85898237 + L1_Mm LINE L1 5226 5298 -585 4 1434 2562 35 23 0 chr1 111297195 111297505 -85897927 - L1Md_F2 LINE L1 -441 6141 5825 4 1434 3615 58 0 0 chr1 111297505 111297956 -85897476 + L1Md_F2 LINE L1 6130 6580 -2 4 1434 3778 116 42 2 chr1 111297956 111298559 -85896873 + Lx3_Mus LINE L1 5297 5913 -1096 4 1434 1113 123 0 0 chr1 111298559 111298738 -85896694 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1434 192 77 0 0 chr1 111298745 111298771 -85896661 + (GGGGA)n Simple_repeat Simple_repeat 1 26 0 4 1434 387 56 0 0 chr1 111298769 111298823 -85896609 + (GAAAA)n Simple_repeat Simple_repeat 5 58 0 4 1434 1400 97 4 36 chr1 111298823 111299070 -85896362 + Lx3_Mus LINE L1 5908 6146 -863 4 1434 1243 104 0 25 chr1 111299070 111299268 -85896164 + L1_Mus1 LINE L1 6374 6566 -1 4 1434 5691 108 34 0 chr1 111299297 111300125 -85895307 + Lx3_Mus LINE L1 6153 7008 -1 4 1434 450 0 0 0 chr1 111301286 111301336 -85894096 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1434 38571 34 6 7 chr1 111301823 111308080 -85887352 - L1Md_A LINE L1 0 6582 336 4 1434 32 43 0 0 chr1 111308793 111308839 -85886593 + AT_rich Low_complexity Low_complexity 1 46 0 4 1434 8926 84 14 3 chr1 111309432 111311368 -85884064 - L1Md_F2 LINE L1 -2 6580 4623 4 1434 19293 91 25 11 chr1 111311367 111314821 -85880611 - L1Md_F2 LINE L1 -1871 4012 506 4 1434 259 335 76 76 chr1 111315099 111315270 -85880162 - MTEb LTR MaLR -191 188 18 4 1434 22 0 0 0 chr1 111317643 111317665 -85877767 + AT_rich Low_complexity Low_complexity 1 22 0 4 1434 25 51 0 0 chr1 111317786 111317825 -85877607 + AT_rich Low_complexity Low_complexity 1 39 0 4 1434 185 189 0 26 chr1 111318842 111318880 -85876552 - L3 LINE CR1 -588 3901 3865 4 1434 415 31 47 0 chr1 111319156 111319220 -85876212 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 1434 551 260 8 0 chr1 111319220 111319347 -85876085 - RLTR25B LTR ERVK -900 128 1 4 1434 638 362 70 19 chr1 111320104 111320473 -85874959 + Lx8 LINE L1 6905 7292 -181 4 1434 212 254 16 0 chr1 111320495 111320558 -85874874 + GA-rich Low_complexity Low_complexity 3 66 0 4 1434 1231 28 0 0 chr1 111320667 111320812 -85874620 + B1_Mus2 SINE Alu 3 147 0 4 1434 225 0 0 0 chr1 111320812 111320837 -85874595 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1434 22 0 0 0 chr1 111321097 111321119 -85874313 + AT_rich Low_complexity Low_complexity 1 22 0 4 1434 2348 86 15 3 chr1 111321126 111321464 -85873968 - L1_Mus3 LINE L1 0 6638 6297 4 1434 264 377 20 7 chr1 111321678 111321825 -85873607 - MLT1B LTR MaLR -2 388 240 4 1434 594 0 0 0 chr1 111321843 111321909 -85873523 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 4 1434 226 54 27 0 chr1 111321910 111321947 -85873485 - B1_Mus2 SINE Alu 0 147 110 4 1434 229 88 0 0 chr1 111322389 111322423 -85873009 - RLTR45 LTR ERVK 0 482 449 4 1434 857 87 70 16 chr1 111322423 111322552 -85872880 - B1_Mus1 SINE Alu -10 138 3 4 1434 367 295 95 18 chr1 111322565 111322734 -85872698 - MLT1B LTR MaLR -203 187 6 4 1434 234 381 84 42 chr1 111322909 111323268 -85872164 - LTR40a LTR ERVL -77 385 12 4 1434 21 57 0 0 chr1 111323335 111323370 -85872062 + AT_rich Low_complexity Low_complexity 1 35 0 4 1434 318 67 0 0 chr1 111323405 111323450 -85871982 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1434 1767 5 0 0 chr1 111323473 111323676 -85871756 + L1Md_A LINE L1 6380 6582 0 4 1434 23 78 0 0 chr1 111323780 111323831 -85871601 + AT_rich Low_complexity Low_complexity 1 51 0 4 1434 1288 314 102 107 chr1 111325391 111325946 -85869486 - Lx6 LINE L1 -136 7324 6749 4 1434 294 106 0 0 chr1 111325946 111325993 -85869439 + (TAG)n Simple_repeat Simple_repeat 1 47 0 4 1434 1288 314 102 107 chr1 111325993 111326029 -85869403 - Lx6 LINE L1 -712 6748 6728 4 1434 269 89 0 22 chr1 111326029 111326075 -85869357 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 1434 1288 337 44 42 chr1 111326075 111326599 -85868833 - Lx6 LINE L1 -733 6727 5973 4 1434 5925 90 2 0 chr1 111326607 111327415 -85868017 - L1_Mm LINE L1 -33 5850 5041 4 1434 339 324 81 0 chr1 111327662 111327773 -85867659 - RSINE1 SINE B4 -37 128 9 4 1434 1886 299 120 62 chr1 111328026 111329197 -85866235 + MTD-int LTR MaLR 1 1240 -18 4 1434 1063 295 68 30 chr1 111329212 111329582 -85865850 + MTD LTR MaLR 1 384 -35 4 1434 789 148 96 0 chr1 111329727 111329862 -85865570 - B1_Mus1 SINE Alu 0 148 1 4 1434 26 30 0 0 chr1 111330208 111330241 -85865191 + AT_rich Low_complexity Low_complexity 1 33 0 4 1434 1739 279 17 10 chr1 111330276 111330689 -85864743 - Lx5 LINE L1 -96 6954 6539 4 1434 1149 183 44 9 chr1 111330680 111330906 -85864526 + Lx5 LINE L1 6337 6570 -480 4 1434 279 0 0 0 chr1 111331964 111331995 -85863437 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1434 370 94 94 0 chr1 111331995 111332059 -85863373 - Lx2A LINE L1 -9 6999 6930 4 1434 997 192 30 0 chr1 111332065 111332268 -85863164 - Lx2A LINE L1 -40 6968 6760 4 1434 770 139 58 0 chr1 111332268 111332405 -85863027 - L1_Mur1 LINE L1 -5969 1013 869 4 1434 783 211 6 0 chr1 111332399 111332555 -85862877 + Lx3A LINE L1 733 889 -6095 4 1434 18850 129 39 36 chr1 111332546 111336848 -85858584 + Lx3A LINE L1 2572 7001 -8 4 1434 2284 137 12 17 chr1 111336867 111337282 -85858150 + L1_Mur1 LINE L1 3813 4225 -1661 4 1434 8365 29 1 0 chr1 111337300 111338477 -85856955 - L1Md_T LINE L1 -2 6580 5403 4 1434 20416 25 2 0 chr1 111338476 111340888 -85854544 + L1_Mm LINE L1 3359 5775 -108 4 1434 4179 161 2 60 chr1 111340870 111341707 -85853725 + L1_Mur1 LINE L1 4212 5000 -886 4 1434 338 0 0 23 chr1 111342616 111342659 -85852773 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 4 1434 28 48 0 0 chr1 111342697 111342739 -85852693 + AT_rich Low_complexity Low_complexity 1 42 0 4 1434 24 32 0 0 chr1 111342870 111342901 -85852531 + AT_rich Low_complexity Low_complexity 1 31 0 4 1434 309 384 30 18 chr1 111343849 111344016 -85851416 + ID_B1 SINE B4 34 202 -22 4 1434 682 273 59 8 chr1 111344207 111344409 -85851023 - B3A SINE B2 -4 212 4 4 1434 2183 89 164 26 chr1 111344506 111345079 -85850353 - L1_Mus3 LINE L1 -318 6320 5669 4 1434 21 57 0 0 chr1 111345567 111345602 -85849830 + AT_rich Low_complexity Low_complexity 1 35 0 4 1434 1612 302 39 46 chr1 111345691 111346254 -85849178 - MTD-int LTR MaLR -404 854 296 4 1434 23 68 0 0 chr1 111346565 111346609 -85848823 + AT_rich Low_complexity Low_complexity 1 44 0 4 1434 477 99 0 0 chr1 111346743 111346824 -85848608 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1434 223 366 0 66 chr1 111346908 111346984 -85848448 + B4A SINE B4 85 155 -137 4 1434 256 377 0 0 chr1 111346916 111346985 -85848447 + PB1D10 SINE Alu 8 76 -41 4 1434 1661 225 26 13 chr1 111346998 111347385 -85848047 + ORR1B1 LTR MaLR 3 394 0 4 1434 519 216 0 0 chr1 111347566 111347682 -85847750 + CT-rich Low_complexity Low_complexity 2 117 0 4 1434 315 87 0 21 chr1 111347683 111347730 -85847702 - RLTR22_Mur LTR ERVK -1639 209 164 4 1434 7040 63 0 6 chr1 111347741 111348644 -85846788 - L1Md_F2 LINE L1 0 6582 5685 4 1434 288 267 98 10 chr1 111348675 111348777 -85846655 - MTD-int LTR MaLR -1147 111 1 4 1434 861 285 146 13 chr1 111348781 111349090 -85846342 - MTD LTR MaLR -8 411 62 4 1434 346 89 0 0 chr1 111349178 111349234 -85846198 - L1_Mus3 LINE L1 -4 6634 6579 4 1434 21 36 0 0 chr1 111349235 111349263 -85846169 + AT_rich Low_complexity Low_complexity 1 28 0 4 1434 24 77 0 0 chr1 111349336 111349388 -85846044 + AT_rich Low_complexity Low_complexity 1 52 0 4 1434 1196 359 100 35 chr1 111349480 111349613 -85845819 - Lx8 LINE L1 -163 7310 7184 4 1434 321 68 0 0 chr1 111349613 111349657 -85845775 + (TTAG)n Simple_repeat Simple_repeat 1 44 0 4 1434 1196 359 100 35 chr1 111349657 111350572 -85844860 - Lx8 LINE L1 -290 7183 6175 4 1434 393 22 0 0 chr1 111350572 111350618 -85844814 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1434 1196 359 100 35 chr1 111350618 111351122 -85844310 - Lx8 LINE L1 -1299 6174 5658 4 1434 790 168 103 0 chr1 111351226 111351381 -85844051 - RLTR16 LTR ERVK -334 171 1 4 1434 997 211 68 37 chr1 111351381 111351706 -85843726 - MYSERV16_I-int LTR ERVK 0 2326 1992 4 1434 3204 111 12 2 chr1 111351709 111352196 -85843236 - L1_Mus4 LINE L1 -4 6632 6141 4 1434 3390 105 2 8 chr1 111352199 111352688 -85842744 + L1_Mus4 LINE L1 5616 6101 -535 4 1434 488 210 35 21 chr1 111352689 111352830 -85842602 - MYSERV16_I-int LTR ERVK -328 1998 1856 4 1434 1568 162 91 31 chr1 111352834 111353217 -85842215 - MYSERV16_I-int LTR ERVK -640 1686 1281 4 1434 297 118 0 0 chr1 111353222 111353273 -85842159 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1434 408 193 80 0 chr1 111353273 111353361 -85842071 + RLTR16 LTR ERVK 409 503 -2 4 1434 382 387 15 0 chr1 111353369 111353630 -85841802 - Lx8 LINE L1 -681 5199 4935 4 1434 4693 132 35 4 chr1 111353903 111354677 -85840755 + Lx LINE L1 5850 6647 -7 4 1434 384 384 15 0 chr1 111354797 111354930 -85840502 + RSINE1 SINE B4 3 137 -28 4 1434 7378 90 9 0 chr1 111354956 111356616 -85838816 + L1_Mus1 LINE L1 4894 6565 -2 4 1434 3988 84 5 7 chr1 111356616 111357176 -85838256 + L1_Mus1 LINE L1 6007 6565 -2 4 1434 25 31 0 0 chr1 111357704 111357736 -85837696 + AT_rich Low_complexity Low_complexity 1 32 0 4 1434 336 184 22 39 chr1 111358093 111358274 -85837158 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 4 1434 492 343 22 0 chr1 111358525 111358662 -85836770 + RSINE1 SINE B4 7 146 -19 4 1434 647 65 22 0 chr1 111359056 111359148 -85836284 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 5 1434 7758 248 50 91 chr1 111359423 111360515 -85834917 + Lx5 LINE L1 932 2028 -3849 5 1434 2906 47 11 0 chr1 111360515 111360878 -85834554 + L1Md_F3 LINE L1 6202 6568 -16 5 1434 7758 233 62 118 chr1 111360878 111360915 -85834517 + Lx5 LINE L1 2029 2029 -3848 5 1434 453 90 0 0 chr1 111360915 111360982 -85834450 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1434 7758 233 62 118 chr1 111360982 111362431 -85833001 + Lx5 LINE L1 2029 3289 -2588 5 1434 1141 88 0 0 chr1 111362431 111362579 -85832853 + B1_Mus1 SINE Alu 1 148 0 5 1434 1158 74 0 0 chr1 111362585 111362733 -85832699 + B1_Mus1 SINE Alu 1 148 0 5 1434 7758 233 62 118 chr1 111362733 111363129 -85832303 + Lx5 LINE L1 3295 3676 -2201 5 1434 221 0 35 0 chr1 111363129 111363158 -85832274 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1434 7758 233 62 118 chr1 111363158 111364444 -85830988 + Lx5 LINE L1 3677 4980 -897 5 1434 753 289 104 59 chr1 111364721 111365158 -85830274 - RLTR26 LTR ERVK -94 533 5 5 1434 5089 242 36 24 chr1 111365169 111367204 -85828228 + Lx5 LINE L1 4976 7047 -3 5 1434 210 162 0 0 chr1 111368699 111368736 -85826696 + T-rich Low_complexity Low_complexity 1 37 0 5 1434 1065 274 133 5 chr1 111369208 111369575 -85825857 - MTD LTR MaLR 0 419 6 5 1434 220 400 0 37 chr1 111369785 111369894 -85825538 + RSINE1 SINE B4 48 152 -13 5 1434 2566 196 9 74 chr1 111370341 111370880 -85824552 - RMER19C LTR ERVK 0 611 108 5 1434 2796 72 18 8 chr1 111370909 111371289 -85824143 - L1Md_F2 LINE L1 -15 6567 6184 5 1434 665 43 0 11 chr1 111371686 111371780 -85823652 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 5 1434 377 264 113 30 chr1 111372089 111372355 -85823077 + Lx9 LINE L1 7342 7629 -15 5 1434 1083 90 0 0 chr1 111372681 111372825 -85822607 + B1_Mus1 SINE Alu 5 148 0 5 1434 516 319 187 32 chr1 111373453 111374170 -85821262 + L1MC LINE L1 4569 5396 -750 5 1434 412 259 19 24 chr1 111375081 111375237 -85820195 - L1_Rod LINE L1 -849 5294 5106 5 1434 21 0 0 0 chr1 111375258 111375279 -85820153 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 1467 178 46 4 chr1 111375418 111375678 -85819754 - Lx LINE L1 -44 6610 6340 5 1434 2920 145 2 2 chr1 111375671 111376133 -85819299 + Lx2 LINE L1 6393 6854 -143 5 1434 267 222 0 113 chr1 111376134 111376205 -85819227 - MTC LTR MaLR -358 63 1 5 1434 5100 103 19 47 chr1 111376282 111377496 -85817936 - L1Md_F2 LINE L1 -4 6634 5519 5 1434 679 219 4 93 chr1 111377496 111377722 -85817710 - MTC-int LTR MaLR -32 1226 1021 5 1434 1360 206 14 44 chr1 111377731 111378026 -85817406 - MTC-int LTR MaLR -783 475 190 5 1434 316 269 158 72 chr1 111378461 111378613 -85816819 - RLTR16 LTR ERVK -344 224 32 5 1434 3664 231 87 86 chr1 111378631 111380392 -85815040 - MYSERV16_I-int LTR ERVK 0 2326 639 5 1434 1510 212 7 29 chr1 111380540 111380932 -85814500 - MYSERV16_I-int LTR ERVK -1464 1378 1014 5 1434 316 200 0 16 chr1 111381013 111381074 -85814358 - RMER3D-int LTR ERVK -1761 1081 1022 5 1434 1030 89 7 0 chr1 111381189 111381335 -85814097 - B1_Mm SINE Alu 0 147 1 5 1434 619 232 99 75 chr1 111381428 111381680 -85813752 - RMER3D-int LTR ERVK -2484 358 101 5 1434 371 248 10 36 chr1 111382052 111382156 -85813276 - RLTR16 LTR ERVK -372 162 25 5 1434 647 253 30 18 chr1 111382155 111382316 -85813116 - MTC-int LTR MaLR -1055 203 41 5 1434 665 211 0 15 chr1 111382316 111382446 -85812986 - MTC LTR MaLR -1 420 293 5 1434 2570 214 52 50 chr1 111382451 111383092 -85812340 + RLTR26 LTR ERVK 1 642 0 5 1434 1366 196 69 15 chr1 111383096 111383370 -85812062 - MTC LTR MaLR -132 289 1 5 1434 1060 317 57 43 chr1 111383597 111384137 -85811295 - RMER15 LTR ERVL -1 574 27 5 1434 32 81 0 0 chr1 111385713 111385787 -85809645 + AT_rich Low_complexity Low_complexity 1 74 0 5 1434 327 130 0 0 chr1 111386191 111386245 -85809187 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1434 23 33 0 0 chr1 111386378 111386408 -85809024 + AT_rich Low_complexity Low_complexity 1 30 0 5 1434 311 151 43 0 chr1 111386437 111386530 -85808902 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 1434 25 65 0 0 chr1 111387137 111387183 -85808249 + AT_rich Low_complexity Low_complexity 1 46 0 5 1434 360 312 71 127 chr1 111387661 111387914 -85807518 - MTE2a LTR MaLR -140 239 1 5 1434 7965 152 27 19 chr1 111388050 111389514 -85805918 - Lx3B LINE L1 -4 6969 5516 5 1434 2414 107 31 0 chr1 111389514 111389870 -85805562 + L1_Mur1 LINE L1 4941 5307 -579 5 1434 790 160 120 0 chr1 111389870 111390020 -85805412 + B2_Mm2 SINE B2 1 168 -27 5 1434 429 20 0 0 chr1 111390032 111390082 -85805350 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1434 1516 120 4 13 chr1 111390087 111390324 -85805108 + L1_Mur1 LINE L1 5293 5527 -359 5 1434 22 70 0 0 chr1 111390722 111390765 -85804667 + AT_rich Low_complexity Low_complexity 1 43 0 5 1434 255 311 76 22 chr1 111390858 111390950 -85804482 + PB1D7 SINE Alu 18 114 -6 5 1434 225 385 87 35 chr1 111391439 111391751 -85803681 - MLT1A LTR MaLR -24 350 23 5 1434 28 61 0 0 chr1 111392023 111392072 -85803360 + AT_rich Low_complexity Low_complexity 1 49 0 5 1434 433 325 26 17 chr1 111392407 111392523 -85802909 + ID_B1 SINE B4 14 130 -94 5 1434 1788 240 17 17 chr1 111392526 111392945 -85802487 - MTC LTR MaLR 0 421 3 5 1434 786 214 42 53 chr1 111392947 111393209 -85802223 - MTC-int LTR MaLR 0 1258 1000 5 1434 2973 250 139 18 chr1 111393537 111394429 -85801003 - MTC-int LTR MaLR -258 1000 1 5 1434 1374 221 74 117 chr1 111394444 111394504 -85800928 - MTC LTR MaLR -19 402 363 5 1434 1093 95 0 0 chr1 111394504 111394652 -85800780 - B1_Mus1 SINE Alu 0 148 1 5 1434 1374 221 74 117 chr1 111394652 111395011 -85800421 - MTC LTR MaLR -59 362 1 5 1434 276 312 21 31 chr1 111395011 111395107 -85800325 + ID_B1 SINE B4 129 223 -1 5 1434 24 0 0 0 chr1 111395109 111395133 -85800299 + AT_rich Low_complexity Low_complexity 1 24 0 5 1434 741 53 0 0 chr1 111396006 111396100 -85799332 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1434 302 115 19 0 chr1 111396101 111396153 -85799279 + (TCC)n Simple_repeat Simple_repeat 1 53 0 5 1434 369 0 0 0 chr1 111396559 111396600 -85798832 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1434 23 0 0 0 chr1 111396687 111396710 -85798722 + AT_rich Low_complexity Low_complexity 1 23 0 5 1434 1418 315 60 63 chr1 111396990 111397736 -85797696 - Lx7 LINE L1 -383 7313 6570 5 1434 449 338 18 18 chr1 111397738 111397961 -85797471 + L1MB5 LINE L1 5860 6082 -92 5 1434 225 242 0 31 chr1 111398523 111398587 -85796845 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 5 1434 6633 71 2 19 chr1 111398635 111399904 -85795528 + L1Md_Gf LINE L1 289 1641 -4245 5 1434 4192 26 0 2 chr1 111399875 111400380 -85795052 + L1Md_Gf LINE L1 4033 4536 -1350 5 1434 288 0 0 0 chr1 111400400 111400432 -85795000 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1434 342 0 0 0 chr1 111400432 111400469 -85794963 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1434 260 338 0 13 chr1 111400625 111400700 -85794732 + MER74A LTR ERVL 31 104 -454 5 1434 8978 30 0 1 chr1 111401281 111402350 -85793082 + L1Md_T LINE L1 4519 5586 -297 5 1434 8063 43 7 0 chr1 111402351 111403334 -85792098 + L1Md_T LINE L1 5588 6577 -5 5 1434 297 0 0 0 chr1 111403382 111403415 -85792017 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1434 1224 350 62 46 chr1 111403652 111404583 -85790849 - Lx8 LINE L1 -733 6740 5795 5 1434 1304 96 5 0 chr1 111404612 111404799 -85790633 + B2_Mm1a SINE B2 1 188 -5 5 1434 2948 103 2 33 chr1 111404802 111405172 -85790260 - L1_Mm LINE L1 -1038 4845 4476 5 1434 1287 47 116 0 chr1 111405172 111405344 -85790088 - B2_Mm2 SINE B2 -2 193 2 5 1434 2948 103 2 33 chr1 111405344 111405423 -85790009 - L1_Mm LINE L1 -1408 4475 4410 5 1434 2690 111 5 0 chr1 111405423 111405811 -85789621 + L1_Mus1 LINE L1 6177 6566 -1 5 1434 1392 291 94 41 chr1 111405829 111406259 -85789173 - Lx8 LINE L1 -124 5756 5287 5 1434 3021 118 9 9 chr1 111406259 111406721 -85788711 - Lx3_Mus LINE L1 -11 6998 6537 5 1434 1392 291 94 41 chr1 111406721 111407148 -85788284 - Lx8 LINE L1 -594 5286 4853 5 1434 22 35 0 0 chr1 111407219 111407248 -85788184 + AT_rich Low_complexity Low_complexity 1 29 0 5 1434 257 135 0 19 chr1 111407664 111407717 -85787715 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 5 1434 1185 61 0 0 chr1 111407837 111407984 -85787448 - B1_Mus2 SINE Alu 0 147 1 5 1434 491 101 13 0 chr1 111410850 111410929 -85784503 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1435 37 90 0 0 chr1 111411981 111412081 -85783351 + AT_rich Low_complexity Low_complexity 1 100 0 5 1435 25 31 0 0 chr1 111412325 111412357 -85783075 + AT_rich Low_complexity Low_complexity 1 32 0 5 1435 23 0 0 0 chr1 111413205 111413228 -85782204 + AT_rich Low_complexity Low_complexity 1 23 0 5 1435 394 295 146 28 chr1 111414247 111414425 -85781007 - MER57C2 LTR ERV1 -221 213 15 5 1435 483 324 49 16 chr1 111414750 111414935 -85780497 + ORR1E LTR MaLR 4 194 -165 5 1435 253 357 9 0 chr1 111415387 111415499 -85779933 + CT-rich Low_complexity Low_complexity 3 115 0 5 1435 23 0 0 0 chr1 111416251 111416274 -85779158 + AT_rich Low_complexity Low_complexity 1 23 0 5 1435 882 174 0 0 chr1 111416703 111416870 -85778562 + (TA)n Simple_repeat Simple_repeat 1 167 0 5 1435 30 27 0 0 chr1 111418313 111418350 -85777082 + AT_rich Low_complexity Low_complexity 1 37 0 5 1435 274 270 137 38 chr1 111418604 111418720 -85776712 + B3A SINE B2 71 199 -17 5 1435 180 0 0 0 chr1 111418720 111418740 -85776692 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1435 221 270 137 38 chr1 111418740 111418754 -85776678 + B3 SINE B2 200 213 -3 5 1435 387 0 0 0 chr1 111418842 111418885 -85776547 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1435 274 156 15 15 chr1 111419959 111420024 -85775408 + (CATA)n Simple_repeat Simple_repeat 4 68 0 5 1435 433 115 23 0 chr1 111420316 111420403 -85775029 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 5 1435 279 0 0 0 chr1 111420572 111420603 -85774829 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1435 320 279 58 0 chr1 111420648 111420734 -85774698 - ID_B1 SINE B4 -4 220 130 5 1435 29 47 0 0 chr1 111420781 111420824 -85774608 + AT_rich Low_complexity Low_complexity 1 43 0 5 1435 232 183 0 32 chr1 111420943 111421005 -85774427 + Lx9 LINE L1 6168 6227 -1417 5 1435 517 260 98 0 chr1 111421084 111421288 -85774144 - Lx9 LINE L1 0 7644 7421 5 1435 2273 306 57 31 chr1 111421322 111422161 -85773271 + Lx9 LINE L1 6342 7202 -442 5 1435 2778 255 96 21 chr1 111422159 111422978 -85772454 + RMER1A Other Other 130 875 -155 5 1435 395 19 0 19 chr1 111422978 111423031 -85772401 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1435 2778 241 107 24 chr1 111423031 111423160 -85772272 + RMER1A Other Other 876 1017 -13 5 1435 242 317 19 19 chr1 111423168 111423271 -85772161 + Lx9 LINE L1 7187 7289 -355 5 1435 2142 180 0 5 chr1 111423398 111423788 -85771644 - L1_Mur2 LINE L1 -639 5238 4851 5 1435 5700 108 16 6 chr1 111423789 111424644 -85770788 + L1_Mus4 LINE L1 5770 6633 -3 5 1435 283 360 62 18 chr1 111424672 111425124 -85770308 - L1_Rod LINE L1 -3709 2138 1667 5 1435 294 128 0 41 chr1 111425130 111425179 -85770253 - MT2_Mm LTR ERVL -1 492 446 5 1435 318 129 0 0 chr1 111425196 111425258 -85770174 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1435 183 80 0 0 chr1 111425255 111425280 -85770152 + (CAGCT)n Simple_repeat Simple_repeat 4 28 0 5 1435 6744 143 9 9 chr1 111425436 111426680 -85768752 - Lx LINE L1 -9 6645 5399 5 1435 183 42 0 0 chr1 111426683 111426707 -85768725 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1435 1547 121 168 0 chr1 111426721 111427001 -85768431 - IAPEY3_LTR LTR ERVK -5 327 1 6 1435 1789 165 10 62 chr1 111427006 111427393 -85768039 - L1_Mur2 LINE L1 -494 5383 5017 6 1435 797 237 19 43 chr1 111427393 111427600 -85767832 - MT2B LTR ERVL -39 562 361 6 1435 965 219 4 16 chr1 111427601 111427847 -85767585 + L1_Mur2 LINE L1 4508 4750 -1127 6 1435 279 133 0 0 chr1 111429255 111429300 -85766132 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1435 32 0 0 0 chr1 111429355 111429387 -85766045 + AT_rich Low_complexity Low_complexity 1 32 0 6 1435 418 318 141 16 chr1 111429639 111429831 -85765601 - B3 SINE B2 0 216 1 6 1435 390 197 284 15 chr1 111429905 111430039 -85765393 + Lx6 LINE L1 6712 6881 -579 6 1435 1106 66 7 0 chr1 111430062 111430199 -85765233 + B1_Mm SINE Alu 1 138 -9 6 1435 248 70 0 23 chr1 111430199 111430243 -85765189 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1435 510 284 147 15 chr1 111430269 111430466 -85764966 + Lx6 LINE L1 6953 7175 -285 6 1435 652 205 0 32 chr1 111430470 111430596 -85764836 + ORR1B2 LTR MaLR 1 122 -245 6 1435 205 178 0 0 chr1 111430598 111430643 -85764789 + T-rich Low_complexity Low_complexity 1 45 0 6 1435 272 70 23 0 chr1 111430653 111430696 -85764736 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1435 318 172 0 15 chr1 111430696 111430751 -85764681 + ORR1B2 LTR MaLR 309 363 -4 6 1435 5619 225 53 10 chr1 111430751 111432195 -85763237 + ORR1B2-int LTR MaLR 2 1508 -1 6 1435 1632 190 120 0 chr1 111432196 111432462 -85762970 + ORR1B2 LTR MaLR 1 293 -74 6 1435 213 39 0 0 chr1 111432462 111432488 -85762944 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1435 1632 190 120 0 chr1 111432488 111432547 -85762885 + ORR1B2 LTR MaLR 294 363 -4 6 1435 645 230 187 5 chr1 111432554 111432768 -85762664 + Lx6 LINE L1 7182 7434 -26 6 1435 950 120 28 7 chr1 111432847 111432990 -85762442 + B1_Mus1 SINE Alu 2 147 -1 6 1435 278 363 56 87 chr1 111433215 111433411 -85762021 + MLT1F2 LTR MaLR 155 344 -216 6 1435 279 396 7 0 chr1 111435148 111435287 -85760145 + ID_B1 SINE B4 2 141 -83 6 1435 2709 290 58 28 chr1 111435480 111435620 -85759812 - Lx6 LINE L1 -59 7401 7266 6 1435 1089 97 108 6 chr1 111435620 111435796 -85759636 + B2_Mm2 SINE B2 2 195 0 6 1435 3045 268 115 21 chr1 111435796 111438083 -85757349 - Lx6 LINE L1 -195 7265 4736 6 1435 433 212 25 0 chr1 111438150 111438268 -85757164 - L1_Mm LINE L1 -1360 4526 4393 6 1435 3364 38 2 0 chr1 111438268 111438663 -85756769 - MTA_Mm LTR MaLR 0 396 1 6 1435 7884 72 7 11 chr1 111438663 111439409 -85756023 - MTA_Mm-int LTR MaLR 0 1098 357 6 1435 3847 44 8 2 chr1 111439409 111439890 -85755542 - L1Md_F2 LINE L1 -4 6578 6095 6 1435 7884 72 7 11 chr1 111439890 111440245 -85755187 - MTA_Mm-int LTR MaLR -742 356 1 6 1435 3249 34 26 0 chr1 111440245 111440631 -85754801 - MTA_Mm LTR MaLR 0 396 1 6 1435 923 239 23 5 chr1 111440670 111440889 -85754543 - Lx6 LINE L1 -1618 4262 4040 6 1435 1316 183 4 0 chr1 111440944 111441179 -85754253 + Lx2 LINE L1 6759 6994 -3 6 1435 34 0 0 0 chr1 111441415 111441449 -85753983 + AT_rich Low_complexity Low_complexity 1 34 0 6 1435 926 279 47 4 chr1 111441457 111441691 -85753741 - MTC LTR MaLR -4 417 174 6 1435 32 0 0 0 chr1 111441732 111441764 -85753668 + AT_rich Low_complexity Low_complexity 1 32 0 6 1435 1005 114 0 0 chr1 111442470 111442610 -85752822 - B1_Mus1 SINE Alu -6 142 3 6 1435 375 237 40 20 chr1 111442808 111442907 -85752525 - RLTR25B LTR ERVK 0 1028 928 6 1435 1878 211 47 104 chr1 111442908 111443457 -85751975 - RLTR25B LTR ERVK -506 522 5 6 1435 297 252 17 67 chr1 111444209 111444328 -85751104 + L1M3 LINE L1 3898 4010 -2130 6 1435 20692 192 28 18 chr1 111444365 111449500 -85745932 + Lx2 LINE L1 1219 6401 -596 6 1435 389 73 56 56 chr1 111449500 111449572 -85745860 + B1_Mus2 SINE Alu 76 147 0 6 1435 189 0 0 0 chr1 111449578 111449599 -85745833 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1435 472 171 25 0 chr1 111449599 111449695 -85745737 + Lx2 LINE L1 6387 6464 -533 6 1435 870 170 12 6 chr1 111449695 111449867 -85745565 + Lx2 LINE L1 6819 6991 -6 6 1435 10837 194 18 95 chr1 111449878 111450494 -85744938 + Lx2 LINE L1 2998 3484 -2402 6 1435 1434 204 3 0 chr1 111450494 111450788 -85744644 + Lx2 LINE L1 6697 6991 -6 6 1435 10837 194 18 95 chr1 111450788 111451247 -85744185 + Lx2 LINE L1 3485 3882 -2004 6 1435 1051 90 7 0 chr1 111451247 111451391 -85744041 + B1_Mm SINE Alu 1 145 -2 6 1435 10837 192 17 82 chr1 111451391 111454629 -85740803 + Lx2 LINE L1 3881 6995 -2 6 1435 898 266 82 19 chr1 111454643 111454961 -85740471 + Lx4B LINE L1 6719 7056 -2 6 1435 1009 334 94 52 chr1 111455136 111456745 -85738687 + Lx9 LINE L1 5350 7186 -458 6 1435 328 280 21 0 chr1 111456853 111456946 -85738486 + Lx9 LINE L1 7344 7438 -206 6 1435 207 256 0 0 chr1 111456955 111456998 -85738434 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1435 23 68 0 0 chr1 111457504 111457548 -85737884 + AT_rich Low_complexity Low_complexity 1 44 0 6 1435 708 288 48 84 chr1 111457570 111457904 -85737528 - MTE2a LTR MaLR -57 322 1 6 1435 1559 226 41 16 chr1 111458170 111458557 -85736875 - Lx4B LINE L1 -4 7054 6658 6 1435 1156 198 25 16 chr1 111458548 111458790 -85736642 - Lx5 LINE L1 -1218 5832 5589 6 1435 28310 68 22 8 chr1 111458788 111460109 -85735323 - L1Md_F2 LINE L1 -3 6579 5236 6 1435 612 0 0 0 chr1 111460109 111460177 -85735255 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1435 28310 93 69 13 chr1 111460177 111464829 -85730603 - L1Md_F2 LINE L1 -648 5235 307 6 1435 785 221 0 0 chr1 111464846 111464995 -85730437 - Lx5 LINE L1 -282 5595 5447 6 1435 1134 110 0 0 chr1 111464996 111465169 -85730263 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 6 1435 459 0 0 0 chr1 111465169 111465220 -85730212 + (TTC)n Simple_repeat Simple_repeat 2 52 0 6 1435 5548 221 19 13 chr1 111465220 111466246 -85729186 - Lx5 LINE L1 -3233 2644 1606 6 1435 378 0 0 0 chr1 111466246 111466288 -85729144 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1435 5548 221 19 13 chr1 111466288 111466692 -85728740 - Lx5 LINE L1 -4272 1605 1206 6 1435 799 243 22 22 chr1 111466695 111466922 -85728510 - L1VL4 LINE L1 -5521 781 555 6 1435 192 77 0 0 chr1 111466978 111467004 -85728428 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1435 798 292 146 38 chr1 111467551 111467724 -85727708 + RMER17C LTR ERVK 3 178 -232 6 1435 593 58 12 0 chr1 111467724 111467810 -85727622 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1435 798 292 146 38 chr1 111467810 111467978 -85727454 + RMER17C LTR ERVK 179 381 -29 6 1435 21 0 0 0 chr1 111468289 111468310 -85727122 + AT_rich Low_complexity Low_complexity 1 21 0 6 1435 29 47 0 0 chr1 111468974 111469017 -85726415 + AT_rich Low_complexity Low_complexity 1 43 0 6 1435 21 0 0 0 chr1 111469528 111469549 -85725883 + AT_rich Low_complexity Low_complexity 1 21 0 6 1435 1466 23 0 0 chr1 111469788 111469959 -85725473 - L1Md_F2 LINE L1 -662 5920 5750 6 1435 4916 70 21 6 chr1 111469959 111470625 -85724807 + L1Md_F2 LINE L1 5906 6581 -1 6 1435 1100 253 188 52 chr1 111471785 111472281 -85723151 + RMER2 LTR ERV1 1 563 -4 6 1435 1006 183 16 12 chr1 111472408 111472637 -85722795 - ORR1A2 LTR MaLR 0 326 1 6 1435 635 37 12 0 chr1 111472646 111472728 -85722704 + (TTCTC)n Simple_repeat Simple_repeat 1 83 0 6 1435 1245 62 0 17 chr1 111472729 111473020 -85722412 + (TTTC)n Simple_repeat Simple_repeat 1 286 0 6 1435 180 0 0 0 chr1 111473025 111473045 -85722387 + (TGG)n Simple_repeat Simple_repeat 2 21 0 6 1435 360 0 0 0 chr1 111473045 111473085 -85722347 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1435 941 120 0 0 chr1 111473088 111473221 -85722211 - B1_Mus1 SINE Alu -14 134 2 6 1435 233 216 40 13 chr1 111473477 111473627 -85721805 + (TCTA)n Simple_repeat Simple_repeat 3 156 0 6 1435 261 83 0 0 chr1 111473627 111473663 -85721769 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1435 354 23 0 0 chr1 111473678 111473721 -85721711 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1435 195 167 0 0 chr1 111473741 111473783 -85721649 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 6 1435 228 273 184 42 chr1 111473924 111474092 -85721340 - MIR SINE MIR -38 224 33 6 1435 768 342 57 36 chr1 111474779 111475113 -85720319 + MTE2b LTR MaLR 1 341 -38 6 1435 324 0 0 0 chr1 111475202 111475238 -85720194 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 6 1435 23 54 0 0 chr1 111476301 111476338 -85719094 + AT_rich Low_complexity Low_complexity 1 37 0 6 1435 653 371 4 4 chr1 111476486 111476724 -85718708 + MIRb SINE MIR 4 241 -27 6 1435 5962 232 49 18 chr1 111477879 111478951 -85716481 - Lx5 LINE L1 0 7050 5954 6 1435 474 75 0 0 chr1 111478951 111479018 -85716414 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1435 5962 191 25 18 chr1 111479018 111479647 -85715785 - Lx5 LINE L1 -1097 5953 5298 6 1435 1337 304 50 28 chr1 111480581 111481220 -85714212 - Lx9 LINE L1 -28 7616 6964 6 1435 341 245 105 29 chr1 111481301 111481406 -85714026 + B1_Mur2 SINE Alu 37 149 0 6 1435 245 409 25 6 chr1 111481679 111481839 -85713593 - MLT1J LTR MaLR -322 190 28 6 1435 2052 218 103 43 chr1 111482269 111482920 -85712512 + RMER6C LTR ERVK 1 690 0 6 1435 9576 68 32 0 chr1 111483464 111484769 -85710663 - L1_Mm LINE L1 -635 5248 3902 6 1435 180 97 0 0 chr1 111484790 111484821 -85710611 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 1435 1107 83 0 0 chr1 111484821 111484965 -85710467 - B1_Mus1 SINE Alu -4 144 1 6 1435 1204 261 60 28 chr1 111485042 111485531 -85709901 - Lx6 LINE L1 -1170 6290 5779 6 1435 800 144 0 32 chr1 111485544 111485673 -85709759 + polypyrimidine Low_complexity Low_complexity 57 180 0 6 1435 1049 92 0 0 chr1 111485673 111485814 -85709618 - B1_Mus1 SINE Alu -7 141 1 6 1435 800 144 0 32 chr1 111485814 111485870 -85709562 + polypyrimidine Low_complexity Low_complexity 1 56 0 6 1435 3393 242 30 2 chr1 111485871 111486776 -85708656 - L1ME3B LINE L1 -414 5826 4856 6 1435 21 71 0 0 chr1 111486789 111486831 -85708601 + AT_rich Low_complexity Low_complexity 1 42 0 6 1435 621 227 13 7 chr1 111486847 111486998 -85708434 + L1_Mur3 LINE L1 4303 4454 -1426 6 1435 629 216 67 22 chr1 111487004 111487184 -85708248 - L1ME3B LINE L1 -1040 4840 4653 6 1435 1075 122 28 6 chr1 111487186 111487367 -85708065 - B2_Mm2 SINE B2 -9 186 2 6 1435 404 224 0 0 chr1 111487369 111487467 -85707965 - L1ME3B LINE L1 -1220 4660 4563 6 1435 274 80 120 0 chr1 111487469 111487519 -85707913 - ORR1B1 LTR MaLR 0 394 312 6 1435 809 155 0 7 chr1 111487519 111487668 -85707764 + CT-rich Low_complexity Low_complexity 2 149 0 6 1435 5232 109 23 0 chr1 111487668 111488441 -85706991 - L1_Mus3 LINE L1 0 6638 5848 6 1435 2144 246 99 78 chr1 111488449 111489345 -85706087 - RMER17B LTR ERVK -131 827 1 6 1435 736 263 206 15 chr1 111489346 111489758 -85705674 - ORR1B1-int LTR MaLR -524 1439 978 6 1435 198 80 19 39 chr1 111490005 111490057 -85705375 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1435 195 42 0 0 chr1 111490610 111490634 -85704798 + (TTA)n Simple_repeat Simple_repeat 2 25 0 6 1435 298 163 204 11 chr1 111490637 111490730 -85704702 - Lx3B LINE L1 -5 6976 6866 6 1435 5217 95 24 27 chr1 111490745 111491532 -85703900 - RLTR13C2 LTR ERVK -23 785 1 6 1435 5361 151 39 11 chr1 111491532 111492454 -85702978 - Lx3B LINE L1 -98 6875 5928 6 1435 3087 188 56 5 chr1 111492455 111493076 -85702356 + L1_Mur2 LINE L1 4951 5603 -274 6 1435 3133 93 115 33 chr1 111493218 111493739 -85701693 - LTRIS2 LTR ERV1 0 564 1 6 1435 261 291 34 17 chr1 111494515 111494634 -85700798 - L1MEf LINE L1 -4682 1518 1398 6 1435 36 23 0 0 chr1 111494789 111494832 -85700600 + AT_rich Low_complexity Low_complexity 1 43 0 7 1435 619 219 8 0 chr1 111494856 111494984 -85700448 + Lx9 LINE L1 7294 7422 -222 7 1435 228 186 107 67 chr1 111494985 111495060 -85700372 - Charlie6 DNA MER1_type -68 3432 3355 7 1435 200 176 20 0 chr1 111495254 111495289 -85700143 + T-rich Low_complexity Low_complexity 20 55 0 7 1435 1161 68 0 0 chr1 111495289 111495436 -85699996 - B1_Mm SINE Alu 0 147 1 7 1435 200 176 20 0 chr1 111495436 111495451 -85699981 + T-rich Low_complexity Low_complexity 5 19 0 7 1435 504 271 8 17 chr1 111495823 111495943 -85699489 + B1_Mur3 SINE Alu 7 125 -24 7 1435 495 33 0 0 chr1 111496099 111496160 -85699272 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1435 738 0 0 0 chr1 111496220 111496302 -85699130 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 7 1435 1216 161 13 18 chr1 111496307 111496534 -85698898 - Lx3A LINE L1 -16 6965 6740 7 1435 22 35 0 0 chr1 111497130 111497159 -85698273 + AT_rich Low_complexity Low_complexity 1 29 0 7 1435 268 346 30 23 chr1 111497340 111497473 -85697959 - RMER5 LTR ERV1 -255 279 146 7 1435 440 293 107 62 chr1 111497477 111497655 -85697777 + B3 SINE B2 25 210 -6 7 1435 352 175 12 70 chr1 111499913 111499999 -85695433 + ID_B1 SINE B4 77 157 -67 7 1435 586 53 0 0 chr1 111499925 111500000 -85695432 + B1_Mus1 SINE Alu 5 79 -69 7 1435 431 71 0 0 chr1 111500000 111500056 -85695376 + B1_Mus2 SINE Alu 79 134 -13 1 1435 303 71 0 0 chr1 111500056 111500098 -85695334 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 2 1435 725 305 87 63 chr1 111501082 111501172 -85694260 + ORR1E LTR MaLR 5 91 -268 3 1435 3066 35 176 12 chr1 111501172 111501580 -85693852 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1435 725 305 87 63 chr1 111501580 111501676 -85693756 + ORR1E LTR MaLR 92 180 -179 3 1435 243 0 0 0 chr1 111501676 111501703 -85693729 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1435 725 305 87 63 chr1 111501703 111501862 -85693570 + ORR1E LTR MaLR 181 359 0 3 1435 34 65 0 0 chr1 111502012 111502074 -85693358 + AT_rich Low_complexity Low_complexity 1 62 0 6 1435 22 56 0 0 chr1 111502410 111502446 -85692986 + AT_rich Low_complexity Low_complexity 1 36 0 7 1435 5758 220 73 62 chr1 111502470 111504606 -85690826 - Lx5 LINE L1 -1 7049 4918 8 1435 2231 250 57 10 chr1 111504606 111505189 -85690243 - RMER20B LTR ERVK -7 620 11 9 1435 384 250 0 0 chr1 111505206 111505310 -85690122 - Lx5 LINE L1 -990 4887 4784 8 1435 2602 206 39 79 chr1 111505330 111505590 -85689842 - Lx5 LINE L1 -3388 2489 2228 8 1435 279 0 0 0 chr1 111505590 111505621 -85689811 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1435 2602 206 39 79 chr1 111505621 111505835 -85689597 - Lx5 LINE L1 -3650 2227 2068 8 1435 429 36 0 0 chr1 111505835 111505890 -85689542 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1435 2602 206 39 79 chr1 111505890 111506188 -85689244 - Lx5 LINE L1 -3810 2067 1748 8 1435 2297 154 73 23 chr1 111506178 111506616 -85688816 - Lx2 LINE L1 -654 6343 5884 1 1435 3679 147 5 28 chr1 111506618 111506829 -85688603 + Lx2 LINE L1 6359 6563 -434 1 1435 3880 202 60 39 chr1 111506829 111507719 -85687713 - RMER13B LTR ERVK 0 908 1 1 1435 3679 147 5 28 chr1 111507719 111508156 -85687276 + Lx2 LINE L1 6564 6991 -6 1 1435 1519 193 7 127 chr1 111508170 111508715 -85686717 - Lx5 LINE L1 -4107 1770 1291 8 1435 301 322 83 17 chr1 111508715 111508835 -85686597 - RMER12 LTR ERVK 0 1322 1195 1 1435 641 264 6 18 chr1 111508917 111509083 -85686349 - RMER12 LTR ERVK -1150 172 9 1 1435 400 239 13 19 chr1 111509092 111509250 -85686182 - Lx5 LINE L1 -5791 1295 1139 8 1435 27 0 0 0 chr1 111509721 111509748 -85685684 + AT_rich Low_complexity Low_complexity 1 27 0 1 1435 3201 5 0 39 chr1 111509969 111510351 -85685081 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1435 55778 20 17 2 chr1 111510351 111516727 -85678705 + IAPEz-int LTR ERVK 8 6481 0 1 1435 3201 5 0 39 chr1 111516727 111517109 -85678323 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1435 24 53 0 0 chr1 111517611 111517649 -85677783 + AT_rich Low_complexity Low_complexity 1 38 0 1 1435 1667 264 63 84 chr1 111518111 111518716 -85676716 - RMER1B Other Other -13 1053 462 1 1435 971 277 104 29 chr1 111518899 111519245 -85676187 - RMER1B Other Other -651 415 44 1 1435 324 58 0 0 chr1 111520058 111520110 -85675322 - L1_Mus4 LINE L1 -2 6634 6583 1 1435 253 170 0 0 chr1 111520110 111520163 -85675269 + L1_Mus3 LINE L1 6540 6592 -46 2 1435 25 0 0 0 chr1 111520170 111520195 -85675237 + AT_rich Low_complexity Low_complexity 1 25 0 2 1435 335 326 51 22 chr1 111520483 111520621 -85674811 + B3 SINE B2 75 216 0 2 1435 1103 82 14 0 chr1 111520794 111520940 -85674492 - B1_Mur4 SINE Alu 0 150 3 2 1435 208 154 0 37 chr1 111521038 111521092 -85674340 + CT-rich Low_complexity Low_complexity 2 53 0 2 1435 21 0 0 0 chr1 111521146 111521167 -85674265 + AT_rich Low_complexity Low_complexity 1 21 0 2 1435 193 292 102 19 chr1 111521314 111521422 -85674010 - MIR SINE MIR -69 193 77 2 1435 309 335 124 34 chr1 111524875 111525230 -85670202 + L1M5 LINE L1 2499 2885 -3261 2 1435 363 23 0 0 chr1 111525318 111525362 -85670070 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1435 228 326 109 0 chr1 111526234 111526326 -85669106 + MTE2a LTR MaLR 38 139 -240 2 1435 461 198 0 9 chr1 111526343 111526450 -85668982 + GA-rich Low_complexity Low_complexity 3 108 0 3 1435 296 313 103 32 chr1 111526555 111526710 -85668722 + MT2A LTR ERVL 270 435 -98 3 1435 207 0 0 0 chr1 111526778 111526801 -85668631 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1435 3660 72 4 0 chr1 111526886 111527355 -85668077 - L1_Mus1 LINE L1 0 6567 6097 3 1435 2019 50 15 0 chr1 111527355 111527616 -85667816 + L1_Mus1 LINE L1 5723 5987 -580 3 1435 263 181 75 33 chr1 111528419 111528539 -85666893 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 3 1435 333 0 0 0 chr1 111528582 111528619 -85666813 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 3 1435 1397 218 0 11 chr1 111529217 111529482 -85665950 - RMER19C LTR ERVK 0 611 350 3 1435 2423 302 90 54 chr1 111529506 111530974 -85664458 + Lx5 LINE L1 5589 7434 -26 3 1435 2575 224 50 14 chr1 111531062 111531842 -85663590 + Lx5 LINE L1 5501 6327 -723 3 1435 303 327 61 87 chr1 111532000 111532231 -85663201 + RLTR26 LTR ERVK 176 400 -242 3 1435 210 71 0 0 chr1 111532231 111532259 -85663173 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1435 309 349 55 20 chr1 111532499 111532698 -85662734 + Lx5 LINE L1 6546 6751 -709 3 1435 529 144 9 9 chr1 111532702 111532807 -85662625 + GA-rich Low_complexity Low_complexity 3 107 0 4 1435 1007 117 6 0 chr1 111532807 111532969 -85662463 + (GA)n Simple_repeat Simple_repeat 2 164 0 4 1435 419 307 27 48 chr1 111533582 111533729 -85661703 - B1_Mur1 SINE Alu 0 149 6 4 1435 1653 46 23 14 chr1 111533773 111533993 -85661439 + L1Md_F3 LINE L1 6349 6570 -14 4 1435 261 0 0 0 chr1 111534181 111534210 -85661222 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1435 459 0 0 0 chr1 111536818 111536869 -85658563 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1435 364 349 70 4 chr1 111536970 111537212 -85658220 + Lx8 LINE L1 6271 6528 -945 4 1435 1055 279 17 28 chr1 111537228 111537582 -85657850 - L1_Mur3 LINE L1 -13 5867 5518 4 1435 1020 241 60 85 chr1 111537597 111537915 -85657517 - RMER19C LTR ERVK -4 607 298 4 1435 8927 126 51 14 chr1 111537915 111538283 -85657149 - MusHAL1 LINE L1 -397 2315 1949 5 1435 492 32 0 0 chr1 111538283 111538345 -85657087 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 5 1435 8927 126 51 14 chr1 111538345 111538668 -85656764 - MusHAL1 LINE L1 -764 1948 1616 5 1435 216 67 0 0 chr1 111538668 111538698 -85656734 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1435 8927 126 51 14 chr1 111538698 111539586 -85655846 - MusHAL1 LINE L1 -1097 1615 679 5 1435 4993 172 7 3 chr1 111539573 111540427 -85655005 - L1VL4 LINE L1 -5445 857 1 5 1435 882 291 87 23 chr1 111540441 111540740 -85654692 - MTC LTR MaLR -5 416 99 5 1435 363 233 26 76 chr1 111540724 111540794 -85654638 + MT2B LTR ERVL 153 212 -389 5 1435 308 282 39 0 chr1 111540794 111540872 -85654560 + PB1D9 SINE Alu 4 84 -36 5 1435 1179 229 34 31 chr1 111540989 111541093 -85654339 + RMER6C LTR ERVK 370 470 -220 5 1435 284 48 0 23 chr1 111541093 111541136 -85654296 + (TAA)n Simple_repeat Simple_repeat 2 43 0 5 1435 1179 229 34 31 chr1 111541136 111541351 -85654081 + RMER6C LTR ERVK 471 690 0 5 1435 285 312 130 0 chr1 111541363 111541571 -85653861 + L1_Mur3 LINE L1 4371 4605 -1275 5 1436 671 259 26 0 chr1 111542493 111542682 -85652750 + L1_Mur1 LINE L1 770 963 -6019 6 1436 5725 232 131 30 chr1 111542654 111543385 -85652047 + Lx3C LINE L1 1230 2098 -3785 6 1436 429 36 0 0 chr1 111543385 111543440 -85651992 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1436 6350 176 63 32 chr1 111543440 111544739 -85650693 + Lx3C LINE L1 2099 3489 -2397 6 1436 216 0 0 0 chr1 111544739 111544763 -85650669 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1436 6350 173 60 32 chr1 111544763 111544992 -85650440 + Lx3C LINE L1 3490 3720 -2166 6 1436 1276 169 7 82 chr1 111545007 111545277 -85650155 - RMER13B LTR ERVK -658 250 1 6 1436 5557 186 63 25 chr1 111545277 111547340 -85648092 + Lx3C LINE L1 4815 6972 -4 6 1436 244 398 41 6 chr1 111548261 111548433 -85646999 + LTR82A LTR ERVL 129 306 -566 6 1436 3665 78 18 4 chr1 111549247 111549750 -85645682 - L1_Mus1 LINE L1 -1 6566 6057 6 1436 5008 86 5 0 chr1 111549752 111550633 -85644799 + L1_Mus1 LINE L1 5167 6053 -514 6 1436 24 32 0 0 chr1 111550685 111550716 -85644716 + AT_rich Low_complexity Low_complexity 1 31 0 6 1436 958 238 40 19 chr1 111551417 111551738 -85643694 + L1_Mur3 LINE L1 895 1222 -6506 6 1436 623 190 0 7 chr1 111551742 111551885 -85643547 + GA-rich Low_complexity Low_complexity 2 143 0 6 1436 8459 232 104 45 chr1 111551892 111552748 -85642684 + L1_Mur3 LINE L1 1207 2060 -3817 6 1436 567 74 0 0 chr1 111552748 111552829 -85642603 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1436 8459 232 104 45 chr1 111552829 111555008 -85640424 + L1_Mur3 LINE L1 2061 4420 -1457 6 1436 2434 177 11 2 chr1 111555008 111555443 -85639989 + Lx2 LINE L1 6559 6997 0 7 1436 906 243 53 44 chr1 111555445 111555764 -85639668 + Lx6 LINE L1 5782 6103 -1357 7 1436 348 326 31 41 chr1 111555776 111555971 -85639461 + Lx6 LINE L1 6557 6749 -711 7 1436 546 16 0 0 chr1 111556051 111556114 -85639318 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1436 519 17 0 0 chr1 111556114 111556173 -85639259 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1436 250 250 96 6 chr1 111556267 111556444 -85638988 + Lx9 LINE L1 7451 7643 -1 7 1436 503 308 114 21 chr1 111556756 111557134 -85638298 + L1M4 LINE L1 2769 3181 -2965 7 1436 268 191 42 11 chr1 111557135 111557230 -85638202 + GA-rich Low_complexity Low_complexity 1 98 0 7 1436 237 333 0 0 chr1 111557543 111557606 -85637826 - L2b LINE L2 0 3375 3313 7 1436 200 59 29 0 chr1 111557892 111557926 -85637506 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 7 1436 1931 194 3 3 chr1 111557926 111558283 -85637149 - Lx2B LINE L1 -31 6969 6613 8 1436 6366 187 32 6 chr1 111558284 111560036 -85635396 - L1VL4 LINE L1 -1256 2303 510 8 1436 23 0 0 0 chr1 111560949 111560972 -85634460 + AT_rich Low_complexity Low_complexity 1 23 0 8 1436 1863 222 27 11 chr1 111561667 111562036 -85633396 - MTC LTR MaLR 0 421 47 8 1436 291 175 0 0 chr1 111562039 111562096 -85633336 + CT-rich Low_complexity Low_complexity 4 60 0 8 1436 1785 293 72 19 chr1 111562096 111562677 -85632755 - Lx6 LINE L1 0 7460 6849 8 1436 331 239 0 86 chr1 111562679 111562784 -85632648 - MTC LTR MaLR -321 100 5 8 1436 1390 222 92 53 chr1 111562784 111563221 -85632211 - MTC-int LTR MaLR -2 1256 803 8 1436 1138 318 30 80 chr1 111563242 111563371 -85632061 + Lx5 LINE L1 6506 6632 -418 8 1436 261 0 0 0 chr1 111563371 111563400 -85632032 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 8 1436 1138 318 30 80 chr1 111563400 111563844 -85631588 + Lx5 LINE L1 6633 7050 0 8 1436 228 67 0 0 chr1 111563858 111563888 -85631544 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 8 1436 661 304 18 6 chr1 111563910 111564079 -85631353 + Lx9 LINE L1 6450 6620 -1024 9 1436 21 71 0 0 chr1 111564242 111564284 -85631148 + AT_rich Low_complexity Low_complexity 1 42 0 9 1436 281 299 0 0 chr1 111564284 111564371 -85631061 - L1MA9 LINE L1 -64 6248 6162 9 1436 923 211 22 0 chr1 111564829 111565061 -85630371 - L1_Mur2 LINE L1 -4293 1584 1348 9 1436 27 49 0 0 chr1 111565969 111566010 -85629422 + AT_rich Low_complexity Low_complexity 1 41 0 9 1436 3844 194 24 114 chr1 111566010 111567240 -85628192 + Lx3C LINE L1 3037 4156 -1721 9 1436 9099 111 18 31 chr1 111567763 111569193 -85626239 - Lx3_Mus LINE L1 -12 6997 5587 9 1436 7143 86 6 2 chr1 111569197 111570224 -85625208 + Lx3C LINE L1 4357 5413 -920 9 1436 2481 244 54 29 chr1 111570224 111571179 -85624253 - MYSERV6-int LTR ERVK -246 8713 7816 9 1436 241 291 53 85 chr1 111571197 111571291 -85624141 - RMER4B LTR ERVK -47 538 448 9 1436 1055 266 71 77 chr1 111571335 111571609 -85623823 - MYSERV6-int LTR ERVK -1703 623 341 9 1436 2947 100 65 2 chr1 111571609 111572041 -85623391 - L1_Mus2 LINE L1 0 6566 6108 9 1436 1055 266 71 77 chr1 111572041 111572340 -85623092 - MYSERV6-int LTR ERVK -1986 340 55 9 1436 183 162 0 0 chr1 111572354 111572391 -85623041 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1436 843 226 66 16 chr1 111572686 111572929 -85622503 - MYSERV6-int LTR ERVK -7504 1455 1201 1 1436 4915 185 16 14 chr1 111572957 111573893 -85621539 + Lx3C LINE L1 5868 6805 -171 9 1436 1210 272 42 3 chr1 111573890 111574226 -85621206 + Lx5 LINE L1 6702 7050 0 1 1436 1450 321 148 26 chr1 111574468 111575385 -85620047 + Lx8 LINE L1 6445 7473 0 1 1436 22 80 0 0 chr1 111575476 111575526 -85619906 + AT_rich Low_complexity Low_complexity 1 50 0 1 1436 245 98 0 24 chr1 111575582 111575624 -85619808 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1436 528 16 0 0 chr1 111575718 111575779 -85619653 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1436 4945 239 19 10 chr1 111576155 111577336 -85618096 - Lx3C LINE L1 -3 6973 5783 1 1436 8823 57 3 2 chr1 111577343 111579181 -85616251 - L1Md_F3 LINE L1 -14 6570 4732 1 1436 5288 63 1 1 chr1 111579190 111579871 -85615561 - L1Md_F2 LINE L1 0 6582 5902 1 1436 9497 64 1 2 chr1 111579873 111581087 -85614345 + L1Md_F2 LINE L1 4657 5869 -14 1 1436 18153 63 76 34 chr1 111581085 111583460 -85611972 - L1Md_F3 LINE L1 -1138 4745 2209 1 1436 237 299 15 15 chr1 111583460 111583528 -85611904 + LTR68 LTR ERV1 251 318 -422 1 1436 18153 63 76 34 chr1 111583528 111583804 -85611628 - L1Md_F3 LINE L1 -1138 2208 1912 1 1436 15409 218 57 14 chr1 111583797 111588513 -85606919 - L1VL2 LINE L1 -597 5289 365 1 1436 8058 185 32 1 chr1 111588514 111590165 -85605267 - L1VL4 LINE L1 -88 5789 4088 1 1436 1244 184 0 0 chr1 111590155 111590411 -85605021 - MusHAL1 LINE L1 -1148 1564 1309 1 1436 2128 220 103 56 chr1 111590411 111591002 -85604430 - RMER13B LTR ERVK 0 908 290 1 1436 537 248 9 0 chr1 111590993 111591106 -85604326 - RMER13B LTR ERVK -794 114 1 1 1436 4963 196 45 64 chr1 111591106 111592785 -85602647 - L1VL4 LINE L1 -3365 2521 864 1 1436 22 94 0 0 chr1 111593428 111593492 -85601940 + AT_rich Low_complexity Low_complexity 1 64 0 1 1436 21 36 0 0 chr1 111593756 111593784 -85601648 + AT_rich Low_complexity Low_complexity 1 28 0 1 1436 207 0 0 0 chr1 111594318 111594341 -85601091 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1436 2249 110 4 1 chr1 111595936 111596282 -85599150 - Lx LINE L1 -561 6093 5742 1 1436 3363 189 9 2 chr1 111596310 111596952 -85598480 - Lx LINE L1 -565 5312 4666 1 1436 1593 206 19 56 chr1 111596957 111597316 -85598116 - ORR1A1 LTR MaLR 0 346 1 1 1436 315 0 0 0 chr1 111599233 111599268 -85596164 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1436 967 222 141 59 chr1 111599275 111599615 -85595817 - RLTR9A LTR ERVK 0 368 1 1 1436 232 203 97 42 chr1 111599593 111599665 -85595767 - LTR82B Low_complexity ERVL -479 351 276 1 1436 209 197 16 0 chr1 111600567 111600628 -85594804 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1436 1474 263 52 58 chr1 111600995 111601591 -85593841 + RLTR20B1 LTR ERVK 1 545 -18 1 1436 364 347 35 7 chr1 111601857 111602002 -85593430 + ID_B1 SINE B4 76 224 0 1 1436 243 0 0 0 chr1 111603374 111603401 -85592031 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1436 707 231 174 26 chr1 111603775 111604114 -85591318 - MTB_Mm LTR MaLR 0 419 2 1 1436 3954 266 93 27 chr1 111604739 111605438 -85589994 - Lx9 LINE L1 0 7644 6882 1 1436 1711 202 32 62 chr1 111605438 111605844 -85589588 + ORR1B1 LTR MaLR 1 394 0 1 1436 3954 266 93 27 chr1 111605844 111606557 -85588875 - Lx9 LINE L1 -763 6881 6138 1 1436 26 50 0 0 chr1 111606855 111606895 -85588537 + AT_rich Low_complexity Low_complexity 1 40 0 1 1436 2346 125 17 27 chr1 111606983 111607385 -85588047 + L1_Mus3 LINE L1 6239 6636 -2 1 1436 5084 89 14 14 chr1 111608064 111608784 -85586648 - L1Md_F2 LINE L1 -12 6570 5851 1 1436 1901 84 0 0 chr1 111608784 111609035 -85586397 + L1_Mm LINE L1 4824 5074 -809 1 1436 22 56 0 0 chr1 111609035 111609071 -85586361 + AT_rich Low_complexity Low_complexity 1 36 0 1 1436 55 0 0 0 chr1 111610134 111610189 -85585243 + AT_rich Low_complexity Low_complexity 1 55 0 1 1436 389 54 18 0 chr1 111610516 111610572 -85584860 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1436 2587 46 3 62 chr1 111610573 111610941 -85584491 - L1Md_F3 LINE L1 -23 6561 6216 1 1436 3784 41 2 0 chr1 111610941 111611403 -85584029 + L1Md_F3 LINE L1 5759 6221 -361 1 1436 334 335 71 27 chr1 111611543 111611727 -85583705 - ORR1E LTR MaLR -167 192 1 1 1436 29 60 0 0 chr1 111611894 111611944 -85583488 + AT_rich Low_complexity Low_complexity 1 50 0 1 1436 944 296 119 28 chr1 111611988 111612094 -85583338 - L1_Mur3 LINE L1 -485 5395 5290 1 1436 357 43 0 0 chr1 111612094 111612141 -85583291 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1436 944 296 119 28 chr1 111612141 111612923 -85582509 - L1_Mur3 LINE L1 -591 5289 4427 1 1436 251 292 15 0 chr1 111612915 111612980 -85582452 + Lx7 LINE L1 6660 6725 -971 1 1436 618 310 95 5 chr1 111612980 111613359 -85582073 - L1_Mur3 LINE L1 -1604 4276 3864 1 1436 384 308 87 70 chr1 111613354 111613792 -85581640 + Lx8 LINE L1 5405 5868 -12 1 1436 324 0 0 0 chr1 111613872 111613908 -85581524 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1436 612 56 56 0 chr1 111613910 111614017 -85581415 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 1 1436 436 253 57 34 chr1 111614212 111614388 -85581044 + Lx8 LINE L1 6272 6451 -1022 1 1436 195 69 0 0 chr1 111614395 111614424 -85581008 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1436 412 307 64 43 chr1 111614424 111614454 -85580978 + CYRA11_Mm Unknown Y-chromosome 144 178 -439 1 1436 957 213 87 0 chr1 111614454 111614661 -85580771 - URR1A DNA MER1_type 0 226 2 1 1436 572 323 191 30 chr1 111614664 111615066 -85580366 + Lx8 LINE L1 6492 6958 -515 1 1436 1177 43 0 0 chr1 111617048 111617188 -85578244 + B1_Mus2 SINE Alu 1 140 -7 1 1436 489 144 0 0 chr1 111617188 111617292 -85578140 + (TAAA)n Simple_repeat Simple_repeat 1 104 0 1 1436 207 0 0 0 chr1 111617460 111617483 -85577949 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1436 376 62 0 30 chr1 111617639 111617705 -85577727 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 1 1436 233 278 83 45 chr1 111617731 111617863 -85577569 - B2_Mm2 SINE B2 -31 164 28 1 1436 195 310 45 22 chr1 111617865 111617954 -85577478 - MIR SINE MIR -8 254 164 1 1436 377 68 0 48 chr1 111618637 111618699 -85576733 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1436 29 78 0 0 chr1 111619722 111619786 -85575646 + AT_rich Low_complexity Low_complexity 1 64 0 1 1436 263 352 65 70 chr1 111619795 111620024 -85575408 + MTD LTR MaLR 1 228 -191 1 1436 37257 50 4 4 chr1 111620659 111627029 -85568403 - L1Md_T LINE L1 0 6585 117 1 1436 299 249 122 38 chr1 111627016 111627229 -85568203 + L1MEc LINE L1 661 891 -5509 1 1436 6478 170 19 16 chr1 111627985 111630034 -85565398 - Lx LINE L1 -8 6646 4602 1 1436 1151 170 27 0 chr1 111630037 111630260 -85565172 + L1_Mur3 LINE L1 3583 3811 -2069 1 1436 1394 226 8 0 chr1 111630275 111630527 -85564905 - Lx5 LINE L1 -104 6946 6693 1 1436 839 107 20 7 chr1 111630547 111630698 -85564734 - L1_Mus3 LINE L1 -8 6630 6478 1 1436 3332 186 6 13 chr1 111630703 111631374 -85564058 - L1_Mur2 LINE L1 -1278 4599 3934 1 1436 276 180 0 0 chr1 111631374 111631424 -85564008 + MYSERV16_I-int LTR ERVK 59 108 -2218 1 1436 2391 225 47 44 chr1 111631457 111632112 -85563320 + MYSERV16_I-int LTR ERVK 277 933 -1393 1 1436 5182 150 95 24 chr1 111632117 111633293 -85562139 + MYSERV16_I-int LTR ERVK 1067 2326 0 1 1436 607 140 16 0 chr1 111633297 111633402 -85562030 + RLTR20D LTR ERVK 5 92 -476 1 1436 291 20 78 0 chr1 111633595 111633646 -85561786 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1 1436 1535 224 63 14 chr1 111633646 111634012 -85561420 + RLTR20D LTR ERVK 85 468 -100 1 1436 16353 205 40 57 chr1 111634012 111635775 -85559657 - Lx5 LINE L1 -1109 5941 4282 1 1436 985 131 0 18 chr1 111635775 111635946 -85559486 - L1_Mus2 LINE L1 0 6566 6399 1 1436 16353 205 39 60 chr1 111635946 111639420 -85556012 - Lx5 LINE L1 -1596 4281 822 1 1436 284 25 50 0 chr1 111640211 111640251 -85555181 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 1 1436 3273 88 8 11 chr1 111640508 111640976 -85554456 - L1Md_F2 LINE L1 -12 6570 6104 1 1436 204 97 0 0 chr1 111642221 111642252 -85553180 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 1 1436 236 313 17 22 chr1 111642279 111642417 -85553015 - L1M3 LINE L1 -1188 4698 4565 1 1436 501 17 0 0 chr1 111642417 111642475 -85552957 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1436 186 43 0 0 chr1 111642664 111642687 -85552745 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1 1436 22 35 0 0 chr1 111642744 111642773 -85552659 + AT_rich Low_complexity Low_complexity 1 29 0 1 1436 279 0 0 0 chr1 111642790 111642821 -85552611 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 1 1436 1000 102 0 0 chr1 111642821 111642958 -85552474 - B1_Mus1 SINE Alu -9 139 3 1 1436 23 33 0 0 chr1 111643518 111643548 -85551884 + AT_rich Low_complexity Low_complexity 1 30 0 1 1436 21 0 0 0 chr1 111644747 111644768 -85550664 + AT_rich Low_complexity Low_complexity 1 21 0 1 1436 294 297 79 26 chr1 111645706 111645820 -85549612 + RSINE1 SINE B4 1 120 -45 1 1436 3048 52 12 65 chr1 111646184 111646616 -85548816 + L1_Mm LINE L1 5253 5661 -222 1 1436 3158 100 7 2 chr1 111646616 111647057 -85548375 - RLTR13B1 LTR ERVK 0 893 451 1 1436 2524 46 0 0 chr1 111647049 111647356 -85548076 - RLTR13B1 LTR ERVK -308 495 189 1 1436 16032 15 1 0 chr1 111647357 111649882 -85545550 - L1Md_A LINE L1 0 6582 4056 1 1436 1578 65 0 0 chr1 111649904 111650104 -85545328 - RLTR13B1 LTR ERVK -603 200 1 1 1436 6626 66 37 6 chr1 111650104 111651001 -85544431 + L1Md_F2 LINE L1 5656 6580 -2 1 1436 241 310 0 29 chr1 111651297 111651400 -85544032 - L1MB4 LINE L1 -212 5968 5869 1 1436 4540 187 50 27 chr1 111652601 111653479 -85541953 + RMER19B LTR ERVK 1 898 -4 1 1436 2583 116 37 5 chr1 111653635 111654041 -85541391 + BGLII LTR ERVK 1 419 -2 1 1436 429 20 0 0 chr1 111654403 111654453 -85540979 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1436 291 122 0 0 chr1 111654453 111654502 -85540930 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1436 288 77 0 0 chr1 111654555 111654594 -85540838 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 1 1436 369 333 15 52 chr1 111654664 111654800 -85540632 - B4A SINE B4 -148 144 14 1 1436 197 151 19 0 chr1 111655698 111655751 -85539681 + (CAA)n Simple_repeat Simple_repeat 1 54 0 1 1436 22 56 0 0 chr1 111656652 111656688 -85538744 + AT_rich Low_complexity Low_complexity 1 36 0 1 1436 245 373 51 34 chr1 111657097 111657333 -85538099 - Lx8 LINE L1 -61 7412 7173 1 1436 712 318 88 38 chr1 111657807 111658024 -85537408 - Lx8 LINE L1 -325 7148 6909 1 1436 4299 154 28 87 chr1 111658024 111658986 -85536446 + RMER17A2 LTR ERVK 1 905 -1 1 1436 712 318 88 38 chr1 111658986 111659111 -85536321 - Lx8 LINE L1 -565 6908 6789 1 1436 1442 191 6 94 chr1 111659142 111659494 -85535938 - ORR1A4 LTR MaLR -8 321 1 1 1436 7115 211 31 139 chr1 111659494 111661657 -85533775 - ORR1A4-int LTR MaLR 0 1963 34 1 1436 696 292 23 10 chr1 111662891 111663164 -85532268 - RLTR4_MM-int LTR ERV1 -2404 5197 4910 1 1436 305 248 75 18 chr1 111663270 111663416 -85532016 - RLTR4_MM-int LTR ERV1 -6177 1379 1311 1 1436 495 0 0 0 chr1 111663846 111663901 -85531531 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1436 767 218 27 28 chr1 111664487 111664677 -85530755 - ORR1A4 LTR MaLR -164 214 1 1 1436 232 323 0 0 chr1 111664677 111664739 -85530693 - Lx8 LINE L1 -737 6736 6675 1 1436 1513 276 37 13 chr1 111664752 111665215 -85530217 + Lx5 LINE L1 6131 6604 -446 1 1436 6643 87 32 34 chr1 111665251 111665823 -85529609 - L1_Mus2 LINE L1 -2 6564 6004 2 1436 1762 155 12 28 chr1 111665823 111666148 -85529284 - RLTR46 LTR ERVK 0 320 1 2 1436 24255 128 44 19 chr1 111666148 111670466 -85524966 - L1_Mus2 LINE L1 -563 6003 1566 2 1436 486 0 0 0 chr1 111670468 111670522 -85524910 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1436 929 203 25 0 chr1 111670608 111670810 -85524622 - Lx2 LINE L1 -27 6970 6764 2 1436 378 167 14 0 chr1 111670814 111670886 -85524546 - L1_Mur1 LINE L1 -442 5444 5372 2 179 11728 212 44 115 chr1 111670868 111677265 -85518167 - Lx2 LINE L1 -488 6509 300 2 1437 7983 165 21 12 chr1 111677275 111678871 -85516561 + Lx2 LINE L1 5372 6997 0 2 1437 3087 234 121 21 chr1 111678881 111679308 -85516124 + Lx5 LINE L1 1551 2065 -3815 2 1437 213 39 0 0 chr1 111679308 111679334 -85516098 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2 1437 3087 234 121 21 chr1 111679334 111680038 -85515394 + Lx5 LINE L1 2066 2795 -3085 2 1437 362 146 0 18 chr1 111680038 111680094 -85515338 + B1_Mus1 SINE Alu 1 55 -93 2 1437 6958 216 44 106 chr1 111680105 111680254 -85515178 + Lx5 LINE L1 3501 3650 -2230 2 1437 438 20 0 0 chr1 111680254 111680305 -85515127 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1437 6958 216 44 106 chr1 111680305 111680834 -85514598 + Lx5 LINE L1 3651 4178 -1702 2 1437 360 0 0 0 chr1 111680834 111680874 -85514558 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 2 1437 6958 216 44 106 chr1 111680874 111681374 -85514058 + Lx5 LINE L1 4179 4659 -1221 2 1437 213 39 0 0 chr1 111681374 111681400 -85514032 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1437 6958 262 46 99 chr1 111681400 111683893 -85511539 + Lx5 LINE L1 4660 6976 -74 2 1437 3144 110 2 35 chr1 111683895 111684386 -85511046 + MT2C_Mm LTR ERVL 1 475 0 2 1437 659 144 0 51 chr1 111684391 111684508 -85510924 + MERVL-int LTR ERVL 18 128 -5357 2 1437 264 145 46 46 chr1 111684509 111684574 -85510858 + Lx6 LINE L1 7370 7434 -26 2 1437 508 375 55 0 chr1 111684762 111685037 -85510395 - B4A SINE B4 -1 291 2 2 1437 360 346 15 23 chr1 111686084 111686214 -85509218 + ID_B1 SINE B4 95 223 -1 2 1437 319 336 77 77 chr1 111686457 111686612 -85508820 + B3A SINE B2 42 196 -2 2 1437 30 27 0 0 chr1 111686728 111686765 -85508667 + AT_rich Low_complexity Low_complexity 1 37 0 2 1437 379 316 37 55 chr1 111686798 111686962 -85508470 - B3A SINE B2 -37 161 1 2 1437 288 155 0 0 chr1 111687000 111687071 -85508361 + GA-rich Low_complexity Low_complexity 2 72 0 2 1437 207 23 0 155 chr1 111687073 111687176 -85508256 + (CAGGA)n Simple_repeat Simple_repeat 3 89 0 2 1437 543 133 0 35 chr1 111687179 111687350 -85508082 + GA-rich Low_complexity Low_complexity 2 166 0 2 1437 21 0 0 0 chr1 111688223 111688244 -85507188 + AT_rich Low_complexity Low_complexity 1 21 0 2 1437 186 43 0 0 chr1 111688666 111688689 -85506743 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1437 24 0 0 0 chr1 111688906 111688930 -85506502 + AT_rich Low_complexity Low_complexity 1 24 0 2 1437 213 228 17 17 chr1 111689271 111689329 -85506103 + GA-rich Low_complexity Low_complexity 1 58 0 2 1437 2839 133 65 4 chr1 111689391 111689508 -85505924 - Lx LINE L1 -4 6650 6536 2 1437 189 0 0 0 chr1 111689508 111689529 -85505903 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 2 1437 2839 133 65 4 chr1 111689529 111689886 -85505546 - Lx LINE L1 -119 6535 6148 2 1437 2688 248 55 20 chr1 111689944 111690649 -85504783 - Lx5 LINE L1 -8 7042 6313 2 1437 185 325 144 8 chr1 111690671 111690789 -85504643 - L2 LINE L2 -908 2511 2378 2 1437 537 343 116 0 chr1 111690805 111691047 -85504385 + MTEb LTR MaLR 59 328 -51 2 1437 23 0 0 0 chr1 111691458 111691481 -85503951 + AT_rich Low_complexity Low_complexity 1 23 0 2 1437 316 403 15 22 chr1 111691481 111691608 -85503824 - RSINE1 SINE B4 -18 147 22 2 1437 2460 65 47 0 chr1 111691608 111691946 -85503486 + MTA_Mm LTR MaLR 1 354 -42 2 1437 16339 79 8 2 chr1 111691946 111694816 -85500616 - L1Md_F2 LINE L1 -12 6570 3678 2 1437 10817 101 4 8 chr1 111694816 111696407 -85499025 + L1Md_F2 LINE L1 2064 3648 -2235 2 1437 473 52 0 0 chr1 111696407 111696465 -85498967 + MTA_Mm LTR MaLR 343 400 0 2 1437 263 242 15 15 chr1 111696498 111696565 -85498867 - 4.5SRNA scRNA scRNA -11 83 17 2 1437 308 317 70 22 chr1 111697481 111697605 -85497827 + L1M4 LINE L1 4449 4579 -1567 2 1437 288 70 0 0 chr1 111697605 111697648 -85497784 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1437 308 317 70 22 chr1 111697648 111697752 -85497680 + L1M4 LINE L1 4580 4687 -1459 2 1437 527 245 68 0 chr1 111698222 111698369 -85497063 + MER67C LTR ERV1 328 484 -227 2 1437 471 73 0 0 chr1 111698380 111698448 -85496984 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 2 1437 5320 150 19 10 chr1 111698718 111699614 -85495818 - Lx LINE L1 -8 6646 5743 2 1437 5151 180 13 21 chr1 111699617 111700668 -85494764 - L1_Mur2 LINE L1 -525 5352 4310 2 1437 1250 124 70 0 chr1 111700667 111700868 -85494564 + L1_Mur2 LINE L1 4088 4302 -1575 2 1437 338 352 51 42 chr1 111701007 111701244 -85494188 - RMER15 LTR ERVL 0 575 337 2 1437 1152 194 57 13 chr1 111701336 111701566 -85493866 + 7SK RNA RNA 4 243 -88 2 1437 758 220 30 0 chr1 111701554 111701722 -85493710 - URR1A DNA MER1_type -6 220 48 2 1437 28 71 0 0 chr1 111702060 111702116 -85493316 + AT_rich Low_complexity Low_complexity 1 56 0 2 1437 1982 5 0 0 chr1 111702117 111702341 -85493091 - L1Md_A LINE L1 -1 6581 6358 2 1437 502 0 0 0 chr1 111702340 111702403 -85493029 + L1Md_T LINE L1 6520 6582 0 2 1437 244 227 12 85 chr1 111702438 111702520 -85492912 - MTE-int LTR MaLR -1163 417 342 2 1437 26 64 0 0 chr1 111702876 111702923 -85492509 + AT_rich Low_complexity Low_complexity 1 47 0 2 1437 2393 115 13 16 chr1 111703555 111703936 -85491496 - Lx LINE L1 -6 6648 6269 2 1437 6529 208 38 11 chr1 111703963 111705137 -85490295 - Lx2B LINE L1 -3 6997 5790 2 1437 4711 58 3 7 chr1 111705137 111705743 -85489689 - L1Md_F2 LINE L1 -12 6570 5967 2 1437 6529 200 14 14 chr1 111705743 111706233 -85489199 - Lx2B LINE L1 -94 5792 5297 2 1437 8100 53 5 1 chr1 111706246 111707949 -85487483 - L1Md_F2 LINE L1 -1 6581 4872 2 1437 254 103 26 0 chr1 111707934 111707973 -85487459 + L1Md_F2 LINE L1 4847 4886 -997 2 1437 217 333 14 0 chr1 111708505 111708577 -85486855 + ID SINE ID 6 78 -146 2 1437 21 71 0 0 chr1 111708762 111708804 -85486628 + AT_rich Low_complexity Low_complexity 1 42 0 2 1437 734 313 101 65 chr1 111709019 111709357 -85486075 - ORR1E LTR MaLR -6 353 4 2 1437 1108 76 0 7 chr1 111710184 111710329 -85485103 + B1_Mm SINE Alu 2 145 -2 2 1437 228 140 39 20 chr1 111710333 111710384 -85485048 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 2 1437 303 93 0 0 chr1 111710588 111710631 -85484801 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 2 1437 513 316 104 0 chr1 111711266 111711459 -85483973 - B3 SINE B2 -2 214 2 2 1437 2005 104 6 19 chr1 111711842 111712157 -85483275 + L1Md_F2 LINE L1 6271 6581 -1 2 1437 282 56 0 0 chr1 111712162 111712198 -85483234 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1437 4455 150 28 23 chr1 111712217 111712607 -85482825 + RMER17B LTR ERVK 139 524 -434 2 1437 1876 27 0 4 chr1 111712607 111712833 -85482599 + L1_Mus1 LINE L1 6343 6567 0 2 1437 450 0 0 0 chr1 111712837 111712887 -85482545 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1437 4455 150 28 23 chr1 111712887 111713283 -85482149 + RMER17B LTR ERVK 525 934 -24 2 1437 1003 323 62 43 chr1 111713333 111713416 -85482016 + Lx8 LINE L1 6729 6818 -655 2 1437 2588 136 5 7 chr1 111713416 111713824 -85481608 + MTB_Mm LTR MaLR 1 407 0 2 1437 1003 323 62 43 chr1 111713824 111714228 -85481204 + Lx8 LINE L1 6819 7225 -248 2 1437 489 369 0 23 chr1 111714600 111714772 -85480660 + B3A SINE B2 3 170 -28 2 1437 23 33 0 0 chr1 111714799 111714829 -85480603 + AT_rich Low_complexity Low_complexity 1 30 0 2 1437 438 20 0 0 chr1 111715486 111715537 -85479895 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 2 1437 22 70 0 0 chr1 111716066 111716109 -85479323 + AT_rich Low_complexity Low_complexity 1 43 0 2 1437 182 98 0 47 chr1 111716189 111716232 -85479200 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1437 339 339 124 27 chr1 111716325 111716583 -85478849 + MER67C LTR ERV1 132 414 -297 2 1437 346 65 32 0 chr1 111716819 111716881 -85478551 + (CAAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1437 267 31 0 0 chr1 111717169 111717201 -85478231 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1437 7505 64 6 9 chr1 111718449 111719546 -85475886 - L1Md_F2 LINE L1 -12 6570 5474 2 1437 372 59 0 0 chr1 111719546 111719597 -85475835 + L1_Mm LINE L1 4333 4383 -1500 2 1437 341 266 7 0 chr1 111719743 111719886 -85475546 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 2 1437 405 0 0 0 chr1 111719929 111719974 -85475458 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1437 771 305 89 23 chr1 111720196 111720589 -85474843 + RMER5 LTR ERV1 59 477 -57 2 1437 758 173 218 16 chr1 111720769 111720957 -85474475 + URR1A DNA MER1_type 1 226 0 2 1437 306 0 0 0 chr1 111721562 111721596 -85473836 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1437 255 261 15 0 chr1 111721623 111721688 -85473744 + GA-rich Low_complexity Low_complexity 4 69 0 2 1437 291 299 75 0 chr1 111721784 111721891 -85473541 - Lx9 LINE L1 -906 6738 6624 2 1437 1287 233 64 11 chr1 111721889 111722249 -85473183 + Lx9 LINE L1 6893 7271 -373 2 1437 281 50 50 0 chr1 111722255 111722295 -85473137 - L1_Mm LINE L1 -271 5612 5571 2 1437 5573 39 20 1 chr1 111722296 111722986 -85472446 + L1Md_F3 LINE L1 5882 6584 0 2 1437 511 281 57 5 chr1 111723103 111723296 -85472136 + Lx9 LINE L1 7289 7491 -153 2 1437 859 350 22 20 chr1 111723311 111723757 -85471675 + Lx8 LINE L1 6482 6928 -545 2 1437 231 423 27 0 chr1 111724270 111724419 -85471013 - ID_B1 SINE B4 -2 222 70 2 1437 1761 167 48 0 chr1 111724824 111725136 -85470296 - ORR1A2 LTR MaLR 0 327 1 2 1437 208 146 20 40 chr1 111725139 111725189 -85470243 + T-rich Low_complexity Low_complexity 2 50 0 2 1437 1153 267 63 17 chr1 111725344 111725695 -85469737 + ORR1C2 LTR MaLR 4 370 -14 2 1437 21 57 0 0 chr1 111726237 111726272 -85469160 + AT_rich Low_complexity Low_complexity 1 35 0 2 1437 1110 163 37 14 chr1 111727101 111727319 -85468113 - Lx2 LINE L1 0 6997 6775 2 1437 1692 136 4 0 chr1 111727317 111727574 -85467858 - Lx2 LINE L1 -352 6645 6388 2 1437 181 391 25 25 chr1 111727855 111727973 -85467459 - L2a LINE L2 0 3426 3309 2 1437 30 0 0 0 chr1 111728010 111728040 -85467392 + AT_rich Low_complexity Low_complexity 1 30 0 2 1437 243 0 0 0 chr1 111728040 111728067 -85467365 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1437 245 189 33 11 chr1 111728283 111728374 -85467058 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1437 207 0 0 0 chr1 111730048 111730071 -85465361 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1437 23 86 0 0 chr1 111732687 111732745 -85462687 + AT_rich Low_complexity Low_complexity 1 58 0 3 1437 1013 92 0 0 chr1 111733177 111733308 -85462124 + B1_Mm SINE Alu 1 131 -16 3 1437 263 28 28 0 chr1 111733308 111733344 -85462088 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1437 38 39 0 0 chr1 111733491 111733543 -85461889 + AT_rich Low_complexity Low_complexity 1 52 0 3 1437 685 261 62 8 chr1 111734553 111734742 -85460690 - ORR1D2 LTR MaLR -14 405 196 3 1437 604 283 7 13 chr1 111734804 111734816 -85460616 - B3 SINE B2 -9 207 196 3 1437 510 17 0 0 chr1 111734816 111734875 -85460557 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 1437 604 283 7 13 chr1 111734875 111735016 -85460416 - B3 SINE B2 -21 195 56 3 1437 18042 110 34 57 chr1 111735018 111735841 -85459591 + Lx3_Mus LINE L1 2806 3657 -2229 3 1437 263 49 0 24 chr1 111735841 111735883 -85459549 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 1437 18042 110 34 57 chr1 111735883 111737785 -85457647 + Lx3_Mus LINE L1 3658 5457 -429 3 1437 257 51 26 0 chr1 111737785 111737824 -85457608 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 1437 18042 112 34 54 chr1 111737824 111738273 -85457159 + Lx3_Mus LINE L1 5458 5906 -1103 3 1437 225 0 0 0 chr1 111738273 111738298 -85457134 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 1437 7876 147 38 9 chr1 111738298 111739363 -85456069 + Lx3_Mus LINE L1 5907 7008 -1 3 1437 2875 166 128 16 chr1 111739373 111740023 -85455409 + L1_Mur2 LINE L1 1087 1822 -4055 3 1437 321 26 0 0 chr1 111740023 111740061 -85455371 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1437 2875 154 63 20 chr1 111740061 111740151 -85455281 + L1_Mur2 LINE L1 1823 1904 -3973 3 1437 9501 20 1 0 chr1 111740173 111741957 -85453475 - L1Md_T LINE L1 0 6582 4796 3 1437 977 101 15 24 chr1 111741949 111742138 -85453294 + L1_Mur2 LINE L1 1897 2086 -3800 3 1437 1406 87 18 206 chr1 111742159 111742552 -85452880 + MusHAL1 LINE L1 1826 2144 -568 3 1437 2130 184 93 2 chr1 111742543 111743101 -85452331 + L1_Mur2 LINE L1 2081 2773 -3107 3 1437 3544 254 14 153 chr1 111743103 111743731 -85451701 + Lx4A LINE L1 4362 4946 -937 3 1437 4916 52 8 0 chr1 111743731 111744351 -85451081 - L1Md_F2 LINE L1 0 6582 5958 3 1437 5836 189 35 24 chr1 111744351 111746348 -85449084 + Lx4A LINE L1 4945 6787 -271 3 1437 397 262 48 80 chr1 111746353 111746540 -85448892 - RLTR23 LTR ERV1 -6 424 244 3 1437 2646 170 59 23 chr1 111746615 111747045 -85448387 + RLTR20C LTR ERVK 1 432 -102 3 1437 459 0 0 0 chr1 111747045 111747096 -85448336 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1437 2646 170 59 23 chr1 111747096 111747177 -85448255 + RLTR20C LTR ERVK 433 529 -5 3 1437 3253 212 30 40 chr1 111747611 111748341 -85447091 + RLTR25B LTR ERVK 1 723 -305 3 1437 1932 133 9 61 chr1 111748341 111748686 -85446746 + ORR1A2 LTR MaLR 1 327 0 3 1437 8376 178 52 20 chr1 111748686 111750420 -85445012 + ORR1A2-int LTR MaLR 1 1789 -3 3 1437 1019 150 8 84 chr1 111750418 111750666 -85444766 + ORR1A2 LTR MaLR 1 341 -5 3 1437 271 218 161 107 chr1 111750650 111750799 -85444633 + RLTR25B LTR ERVK 702 858 -170 3 1437 753 264 82 67 chr1 111750902 111751018 -85444414 + RLTR25B LTR ERVK 832 957 -146 3 1437 255 31 0 0 chr1 111751018 111751050 -85444382 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1437 567 0 0 0 chr1 111751054 111751117 -85444315 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 1437 753 264 82 67 chr1 111751117 111751263 -85444169 + RLTR25B LTR ERVK 958 1100 -3 3 1437 1205 242 8 12 chr1 111751263 111751522 -85443910 + Lx4A LINE L1 6783 7040 -18 3 1437 207 0 0 0 chr1 111751525 111751548 -85443884 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1437 21 0 0 0 chr1 111751749 111751770 -85443662 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 6928 180 23 15 chr1 111751853 111753202 -85442230 - Lx LINE L1 -4 6650 5293 3 1437 3080 76 12 0 chr1 111753202 111753621 -85441811 - L1_Mus2 LINE L1 -2 6564 6141 3 1437 6928 188 22 28 chr1 111753621 111754515 -85440917 - Lx LINE L1 -591 5292 4415 3 1437 3021 115 6 29 chr1 111754516 111755028 -85440404 - MusHAL1 LINE L1 -1212 1500 1001 3 1437 472 160 0 0 chr1 111755006 111755081 -85440351 - L1VL4 LINE L1 -6165 137 63 3 1437 399 408 18 48 chr1 111755145 111755418 -85440014 + B4 SINE B4 8 272 -20 3 1437 211 75 53 70 chr1 111756189 111756246 -85439186 + A-rich Low_complexity Low_complexity 2 57 0 3 1437 550 16 0 0 chr1 111756602 111756663 -85438769 + L1Md_F2 LINE L1 5526 5586 -297 3 1437 7967 55 0 1 chr1 111756663 111757656 -85437776 + L1Md_F2 LINE L1 5587 6578 -4 3 1437 1719 214 58 37 chr1 111758169 111758639 -85436793 - RLTR11A2 LTR ERVK -2 525 4 3 1437 1030 109 0 0 chr1 111758888 111759026 -85436406 + B1_Mus1 SINE Alu 1 138 -10 3 1437 310 42 42 0 chr1 111759026 111759074 -85436358 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1437 314 300 55 0 chr1 111759364 111759474 -85435958 + MLT2B2 LTR ERVL 3 118 -397 3 1437 210 312 11 111 chr1 111759769 111759859 -85435573 + ID4 SINE ID 1 81 -2 3 1437 398 347 8 0 chr1 111760031 111760152 -85435280 + B3 SINE B2 91 212 -4 3 1437 306 266 116 11 chr1 111760280 111760375 -85435057 - ID_B1 SINE B4 -3 221 117 3 1437 321 331 41 0 chr1 111760375 111760520 -85434912 - MIR SINE MIR -102 160 10 3 1437 24 32 0 0 chr1 111761328 111761359 -85434073 + AT_rich Low_complexity Low_complexity 1 31 0 3 1437 25 31 0 0 chr1 111761743 111761775 -85433657 + AT_rich Low_complexity Low_complexity 1 32 0 3 1437 2444 121 91 7 chr1 111762003 111762419 -85433013 - Lx3_Mus LINE L1 -8 7001 6551 3 1437 446 0 19 0 chr1 111762700 111762754 -85432678 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 3 1437 23 0 0 0 chr1 111763063 111763086 -85432346 + AT_rich Low_complexity Low_complexity 1 23 0 3 1437 581 278 86 11 chr1 111763415 111763695 -85431737 - Arthur1 DNA Tip100 -630 3317 3017 3 1437 198 0 0 0 chr1 111764339 111764361 -85431071 + (ATG)n Simple_repeat Simple_repeat 1 22 0 3 1437 17324 98 1 25 chr1 111764753 111768117 -85427315 + L1Md_F2 LINE L1 307 3588 -2295 3 1437 35392 35 0 0 chr1 111768117 111773736 -85421696 + L1Md_T LINE L1 1 5589 -297 3 1437 8863 9 0 3 chr1 111773736 111774735 -85420697 + L1Md_T LINE L1 5590 6585 0 3 1437 17755 66 2 1 chr1 111774736 111777730 -85417702 + L1Md_F2 LINE L1 3572 6566 -16 3 1437 585 0 0 0 chr1 111777730 111777795 -85417637 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1437 315 189 108 0 chr1 111777961 111778035 -85417397 + L1_Rod LINE L1 5700 5781 -66 3 1437 521 314 39 34 chr1 111778024 111778232 -85417200 + Lx8 LINE L1 6813 7021 -452 3 1437 27 0 0 0 chr1 111778484 111778511 -85416921 + AT_rich Low_complexity Low_complexity 1 27 0 3 1437 10620 158 18 8 chr1 111778762 111781593 -85413839 - Lx LINE L1 -6 6648 3794 3 1437 1123 92 14 75 chr1 111781593 111781650 -85413782 - L1_Mur1 LINE L1 -723 3191 3138 3 1437 201 74 0 0 chr1 111781650 111781677 -85413755 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1437 1123 125 13 142 chr1 111781677 111781976 -85413456 - L1_Mur1 LINE L1 -2744 3142 2912 3 1437 617 144 53 0 chr1 111781951 111782083 -85413349 - L1VL4 LINE L1 -5388 914 776 3 1437 3570 196 71 4 chr1 111782560 111783292 -85412140 - L1VL2 LINE L1 -5495 840 60 3 1437 4721 68 16 2 chr1 111783554 111784444 -85410988 - L1Md_F2 LINE L1 -417 6165 5263 3 1437 2428 93 37 11 chr1 111784444 111784793 -85410639 + L1Md_F2 LINE L1 6152 6509 -73 3 1437 318 80 0 0 chr1 111785385 111785435 -85409997 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1437 3571 158 53 19 chr1 111786059 111786788 -85408644 - RMER6A LTR ERVK 0 756 3 3 1437 2931 86 5 21 chr1 111787090 111787518 -85407914 + BGLII LTR ERVK 1 421 0 3 1437 300 316 13 0 chr1 111788250 111788326 -85407106 + MER5B DNA MER1_type 55 131 -47 3 1437 272 222 0 27 chr1 111788326 111788400 -85407032 + T-rich Low_complexity Low_complexity 1 72 0 3 1437 2852 92 0 30 chr1 111789337 111789515 -85405917 + L1_Mus1 LINE L1 6046 6223 -344 3 1437 2361 32 0 0 chr1 111789515 111789794 -85405638 - L1Md_A LINE L1 0 6582 6304 3 1437 2852 92 0 30 chr1 111789794 111790019 -85405413 + L1_Mus1 LINE L1 6224 6437 -130 3 1437 270 0 0 0 chr1 111791184 111791214 -85404218 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1437 1073 103 0 0 chr1 111791402 111791548 -85403884 + B1_Mus2 SINE Alu 2 147 0 3 1437 206 62 31 0 chr1 111791548 111791580 -85403852 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 3 1437 23 33 0 0 chr1 111791615 111791645 -85403787 + AT_rich Low_complexity Low_complexity 1 30 0 3 1437 2260 242 78 12 chr1 111792806 111793465 -85401967 + Lx3C LINE L1 6284 6996 -4 3 1437 396 0 0 0 chr1 111793543 111793587 -85401845 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 3 1437 1115 50 0 35 chr1 111793929 111794074 -85401358 + B1_Mus1 SINE Alu 2 141 -7 3 1437 297 0 0 0 chr1 111794078 111794111 -85401321 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1437 571 356 32 8 chr1 111794331 111794580 -85400852 - B4A SINE B4 -35 257 3 3 1437 216 0 0 0 chr1 111794679 111794703 -85400729 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1437 24 53 0 0 chr1 111795002 111795040 -85400392 + AT_rich Low_complexity Low_complexity 1 38 0 3 1437 23 68 0 0 chr1 111795625 111795669 -85399763 + AT_rich Low_complexity Low_complexity 1 44 0 3 1437 218 304 0 0 chr1 111796591 111796637 -85398795 + PB1D10 SINE Alu 46 91 -26 3 1437 204 250 0 0 chr1 111796675 111796755 -85398677 + (CAGAGA)n Simple_repeat Simple_repeat 1 80 0 3 1437 214 133 44 0 chr1 111797202 111797247 -85398185 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1437 27 29 0 0 chr1 111797722 111797756 -85397676 + AT_rich Low_complexity Low_complexity 1 34 0 3 1437 257 361 74 25 chr1 111799663 111799825 -85395607 + MT2A LTR ERVL 295 464 -69 3 1437 4395 194 70 0 chr1 111800357 111801196 -85394236 - RMER13B LTR ERVK -10 898 1 3 1437 1602 263 137 72 chr1 111801223 111801922 -85393510 - Lx5 LINE L1 -627 6423 5679 3 1437 1518 284 3 13 chr1 111801942 111802136 -85393296 + Lx5 LINE L1 6455 6631 -419 3 1437 258 32 0 0 chr1 111802136 111802167 -85393265 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1437 1518 336 10 39 chr1 111802167 111802601 -85392831 + Lx5 LINE L1 6632 7050 0 3 1437 21 0 0 0 chr1 111802725 111802746 -85392686 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 271 356 58 47 chr1 111802870 111802957 -85392475 - ORR1E LTR MaLR -186 173 87 3 1437 1178 110 70 5 chr1 111802957 111803158 -85392274 - L1Md_F2 LINE L1 0 6582 6369 3 1437 271 356 58 47 chr1 111803158 111803241 -85392191 - ORR1E LTR MaLR -273 86 1 3 1437 21 0 0 0 chr1 111803651 111803672 -85391760 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 597 132 0 143 chr1 111803808 111803845 -85391587 - Lx5 LINE L1 -1245 5805 5785 3 1437 3536 83 14 4 chr1 111803845 111804338 -85391094 - L1_Mus3 LINE L1 -9 6629 6132 3 179 727 84 0 0 chr1 111804338 111804433 -85390999 - Lx3C LINE L1 -1190 5786 5692 3 1438 6438 163 27 11 chr1 111804434 111805605 -85389827 + Lx3C LINE L1 5778 6967 -9 3 1438 23 54 0 0 chr1 111805619 111805656 -85389776 + AT_rich Low_complexity Low_complexity 1 37 0 3 1438 612 186 0 0 chr1 111805981 111806094 -85389338 - RMER6C LTR ERVK -3 687 575 3 1438 353 287 15 23 chr1 111806891 111807023 -85388409 + CT-rich Low_complexity Low_complexity 2 132 0 3 1438 25 51 0 0 chr1 111807597 111807636 -85387796 + AT_rich Low_complexity Low_complexity 1 39 0 3 1438 24 0 0 0 chr1 111808035 111808059 -85387373 + AT_rich Low_complexity Low_complexity 1 24 0 3 1438 204 67 0 0 chr1 111808081 111808111 -85387321 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1438 210 321 111 67 chr1 111809454 111809544 -85385888 + B4 SINE B4 1 94 -198 4 1438 315 0 0 0 chr1 111810584 111810619 -85384813 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 4 1438 218 222 15 31 chr1 111810877 111810942 -85384490 + A-rich Low_complexity Low_complexity 3 66 0 4 1438 307 371 204 0 chr1 111811614 111811781 -85383651 - MTE2b LTR MaLR -111 268 68 4 1438 10396 69 8 32 chr1 111812078 111813748 -85381684 - L1VL4 LINE L1 -3215 2668 1038 4 1438 302 338 65 22 chr1 111814137 111814276 -85381156 - MTE2b LTR MaLR -38 341 197 4 1438 627 206 0 0 chr1 111814321 111814481 -85380951 + GA-rich Low_complexity Low_complexity 1 160 0 4 1438 592 269 20 33 chr1 111814508 111814658 -85380774 + B3A SINE B2 5 152 -46 4 1438 295 244 210 40 chr1 111815238 111815362 -85380070 - MTD LTR MaLR -54 365 221 4 1438 459 225 68 69 chr1 111815848 111816029 -85379403 + RMER19B LTR ERVK 342 475 -427 4 1438 405 0 0 0 chr1 111816030 111816075 -85379357 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1438 4213 132 56 0 chr1 111816187 111816852 -85378580 + Lx3A LINE L1 6274 6975 -6 4 1438 47 73 0 0 chr1 111816854 111816950 -85378482 + AT_rich Low_complexity Low_complexity 1 96 0 4 1438 1517 147 11 4 chr1 111817003 111817277 -85378155 - Lx2 LINE L1 0 6997 6722 4 1438 1210 261 17 43 chr1 111817277 111817625 -85377807 + RMER19C LTR ERVK 273 611 0 4 1438 23 0 0 0 chr1 111817770 111817793 -85377639 + AT_rich Low_complexity Low_complexity 1 23 0 4 1438 216 0 0 0 chr1 111817836 111817860 -85377572 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1438 335 252 41 17 chr1 111818013 111818146 -85377286 - L1M2 LINE L1 -739 5620 5488 4 1438 616 132 16 0 chr1 111818749 111818878 -85376554 + (GTTTG)n Simple_repeat Simple_repeat 5 135 0 4 1438 867 148 28 0 chr1 111818878 111819020 -85376412 - B1_Mus1 SINE Alu -1 147 2 4 1438 3268 146 7 4 chr1 111819040 111819577 -85375855 - L1_Mus4 LINE L1 -2 6634 6096 4 1438 15732 169 42 70 chr1 111819577 111820331 -85375101 - L1_Mus4 LINE L1 -731 5905 5325 4 1438 8464 26 0 0 chr1 111820331 111821315 -85374117 + L1Md_T LINE L1 5587 6570 -12 4 1438 15732 201 22 103 chr1 111821315 111826401 -85369031 - L1_Mus4 LINE L1 -559 5324 545 4 1438 242 350 36 23 chr1 111827095 111827314 -85368118 - L1M2 LINE L1 -1158 4985 4764 4 1438 352 312 70 38 chr1 111827627 111827840 -85367592 + MER2 DNA MER2_type 73 292 -53 4 1438 22 0 0 0 chr1 111828111 111828133 -85367299 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 207 139 0 0 chr1 111828205 111828241 -85367191 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1438 21 0 0 0 chr1 111829213 111829234 -85366198 + AT_rich Low_complexity Low_complexity 1 21 0 4 1438 1059 97 0 0 chr1 111829708 111829853 -85365579 + B1_Mm SINE Alu 1 145 -2 4 1438 441 0 0 0 chr1 111829857 111829906 -85365526 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1438 234 0 0 0 chr1 111830317 111830343 -85365089 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1438 211 54 0 51 chr1 111830600 111830639 -85364793 + (TTTTTA)n Simple_repeat Simple_repeat 6 42 0 4 1438 1096 298 49 32 chr1 111831278 111831625 -85363807 - MTE2a LTR MaLR -9 370 18 4 1438 33 0 0 0 chr1 111831918 111831951 -85363481 + AT_rich Low_complexity Low_complexity 1 33 0 4 1438 23 33 0 0 chr1 111832285 111832315 -85363117 + AT_rich Low_complexity Low_complexity 1 30 0 4 1438 959 118 20 0 chr1 111832323 111832476 -85362956 + B2_Mm1t SINE B2 2 157 -36 4 1438 303 28 0 0 chr1 111832481 111832517 -85362915 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 4 1438 456 106 300 58 chr1 111832560 111832680 -85362752 + B2_Mm2 SINE B2 47 195 0 4 1438 250 222 0 36 chr1 111833042 111833126 -85362306 + GA-rich Low_complexity Low_complexity 4 84 0 4 1438 555 318 17 6 chr1 111833183 111833360 -85362072 + B3A SINE B2 2 180 -18 4 1438 29 47 0 0 chr1 111833525 111833568 -85361864 + AT_rich Low_complexity Low_complexity 1 43 0 4 1438 282 227 0 0 chr1 111833734 111833809 -85361623 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1438 314 362 8 8 chr1 111834542 111834670 -85360762 - Lx8 LINE L1 -349 7124 6997 4 1438 917 328 63 18 chr1 111834715 111835162 -85360270 - Lx8 LINE L1 -774 6699 6233 4 1438 5390 107 178 7 chr1 111835275 111836157 -85359275 + RLTR13D4 LTR ERVK 1 1033 0 4 1438 364 394 14 33 chr1 111836165 111836375 -85359057 + B3 SINE B2 5 210 -6 4 1438 1356 240 83 67 chr1 111837868 111838167 -85357265 - ORR1B2 LTR MaLR 0 367 50 4 1438 1067 97 0 0 chr1 111838167 111838321 -85357111 + L1_Mus2 LINE L1 6413 6566 0 4 1438 1356 240 83 67 chr1 111838321 111838382 -85357050 - ORR1B2 LTR MaLR -318 49 1 4 1438 1587 241 59 3 chr1 111838685 111839076 -85356356 - MTC LTR MaLR -8 413 1 4 1438 2989 71 2 10 chr1 111839563 111839962 -85355470 - MTA_Mm LTR MaLR 0 396 1 4 1438 703 303 0 24 chr1 111840769 111840982 -85354450 + B3 SINE B2 1 208 -8 4 1438 1049 294 49 16 chr1 111841148 111841701 -85353731 + L1M4 LINE L1 2146 2716 -3430 4 1438 390 370 86 15 chr1 111841845 111842114 -85353318 - Tigger7 DNA MER2_type -2179 312 25 4 1438 334 333 11 27 chr1 111842177 111842365 -85353067 + L1M4 LINE L1 4642 4826 -1314 4 1438 458 119 12 0 chr1 111842380 111842464 -85352968 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 4 1438 269 278 33 0 chr1 111842500 111842590 -85352842 + L1M4 LINE L1 5018 5110 -1036 4 1438 222 37 0 0 chr1 111842685 111842712 -85352720 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4 1438 543 296 0 0 chr1 111842713 111842848 -85352584 - B1_Mur1 SINE Alu -12 137 3 4 1438 232 296 10 48 chr1 111843475 111843578 -85351854 + CT-rich Low_complexity Low_complexity 2 100 0 4 1438 312 262 229 19 chr1 111843606 111843711 -85351721 - ID_B1 SINE B4 -8 216 90 4 1438 2624 60 3 22 chr1 111844017 111844374 -85351058 - L1_Mus2 LINE L1 -1 6565 6216 4 1438 1828 94 0 0 chr1 111844374 111844628 -85350804 + L1_Mus2 LINE L1 5957 6210 -356 4 1438 576 29 0 0 chr1 111844661 111844731 -85350701 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1438 432 0 0 0 chr1 111845113 111845161 -85350271 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1438 21 0 0 0 chr1 111846166 111846187 -85349245 + AT_rich Low_complexity Low_complexity 1 21 0 4 1438 248 135 0 37 chr1 111846187 111846241 -85349191 - Lx3A LINE L1 -7 6974 6923 4 1438 1505 48 0 11 chr1 111846241 111846430 -85349002 + Lx3A LINE L1 6642 6828 -153 4 1438 1990 150 3 9 chr1 111846687 111847031 -85348401 - Lx3A LINE L1 -7 6974 6633 4 1438 1171 273 114 12 chr1 111848000 111848344 -85347088 + ORR1D2 LTR MaLR 1 394 0 4 1438 1698 130 25 0 chr1 111848399 111848676 -85346756 + RLTR31A_Mm LTR ERVK 45 328 -256 4 1438 687 334 75 122 chr1 111849305 111849690 -85345742 + MTE2a LTR MaLR 9 375 -4 4 1438 2216 166 121 48 chr1 111849691 111850207 -85345225 - RMER4B LTR ERVK 0 585 43 4 1438 279 54 0 0 chr1 111850207 111850244 -85345188 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1438 2216 166 121 48 chr1 111850244 111850272 -85345160 - RMER4B LTR ERVK -543 42 1 4 1438 5231 61 3 41 chr1 111851404 111852119 -85343313 - L1Md_F2 LINE L1 -12 6570 5883 4 1438 28 61 0 0 chr1 111852334 111852383 -85343049 + AT_rich Low_complexity Low_complexity 1 49 0 4 1438 21 57 0 0 chr1 111852430 111852465 -85342967 + AT_rich Low_complexity Low_complexity 1 35 0 4 1438 511 319 101 5 chr1 111854050 111854433 -85340999 + MamRep605 Unknown Unknown 402 848 -28 4 1438 25 0 0 0 chr1 111854988 111855013 -85340419 + AT_rich Low_complexity Low_complexity 1 25 0 4 1438 21 0 0 0 chr1 111855086 111855107 -85340325 + AT_rich Low_complexity Low_complexity 1 21 0 4 1438 22 0 0 0 chr1 111855138 111855160 -85340272 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 417 318 19 0 chr1 111855475 111855582 -85339850 - ID_B1 SINE B4 -11 213 105 4 1438 339 25 0 0 chr1 111855777 111855817 -85339615 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 1438 3842 158 72 8 chr1 111856078 111856388 -85339044 + Lx LINE L1 582 925 -5709 4 1438 3303 35 5 2 chr1 111856388 111856783 -85338649 + MTA_Mm LTR MaLR 1 396 0 4 1438 3842 158 72 8 chr1 111856783 111856797 -85338635 + Lx LINE L1 926 938 -5696 4 1438 3840 49 2 30 chr1 111856797 111857320 -85338112 + L1Md_F2 LINE L1 6081 6582 0 4 1438 16899 161 77 11 chr1 111857330 111857764 -85337668 + Lx LINE L1 939 1393 -4490 4 1438 279 0 0 0 chr1 111857764 111857795 -85337637 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1438 16899 190 120 32 chr1 111857795 111859203 -85336229 + Lx LINE L1 1394 2794 -3089 4 1438 342 0 0 0 chr1 111859203 111859241 -85336191 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 1438 16899 172 84 24 chr1 111859241 111862726 -85332706 + Lx LINE L1 2795 6653 -1 4 1438 33 0 0 0 chr1 111863237 111863270 -85332162 + AT_rich Low_complexity Low_complexity 1 33 0 4 1438 182 136 0 22 chr1 111864293 111864338 -85331094 + T-rich Low_complexity Low_complexity 2 45 0 4 1438 297 262 20 66 chr1 111864338 111864489 -85330943 - Lx6 LINE L1 -1349 6111 5968 4 1438 905 220 32 9 chr1 111864926 111865146 -85330286 - URR1B DNA MER1_type 0 225 1 4 1438 391 240 109 73 chr1 111865573 111865723 -85329709 - Lx7 LINE L1 0 7696 7555 4 1438 194 0 0 37 chr1 111865723 111865750 -85329682 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1438 909 50 0 0 chr1 111865750 111865869 -85329563 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 4 1438 391 240 109 73 chr1 111865869 111865964 -85329468 - Lx7 LINE L1 -142 7554 7442 4 1438 461 164 0 28 chr1 111866045 111866152 -85329280 + G-rich Low_complexity Low_complexity 1 104 0 4 1438 1729 253 93 4 chr1 111866216 111866700 -85328732 - Lx7 LINE L1 -453 7243 6717 4 1438 678 210 12 18 chr1 111866678 111866843 -85328589 - Lx6 LINE L1 -623 5257 5094 4 1438 7631 60 13 1 chr1 111867042 111868161 -85327271 - L1Md_F2 LINE L1 -18 6564 5434 4 1438 183 100 0 0 chr1 111869642 111869672 -85325760 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1438 237 197 0 0 chr1 111869704 111869770 -85325662 + GA-rich Low_complexity Low_complexity 2 67 0 4 1438 25 31 0 0 chr1 111869915 111869947 -85325485 + AT_rich Low_complexity Low_complexity 1 32 0 4 1438 285 29 0 0 chr1 111870339 111870373 -85325059 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1438 370 311 34 0 chr1 111870735 111870854 -85324578 + ID_B1 SINE B4 69 191 -33 4 1438 34 42 0 0 chr1 111871889 111871937 -85323495 + AT_rich Low_complexity Low_complexity 1 48 0 4 1438 297 0 0 0 chr1 111875172 111875205 -85320227 + (CATG)n Simple_repeat Simple_repeat 1 33 0 4 1438 490 294 19 12 chr1 111875254 111875416 -85320016 - RSINE1 SINE B4 0 165 3 4 1438 249 33 0 0 chr1 111875742 111875772 -85319660 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1438 266 225 105 70 chr1 111876289 111876375 -85319057 + MTEa LTR MaLR 9 97 -282 5 1438 504 0 0 0 chr1 111876807 111876863 -85318569 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 5 1438 716 158 0 8 chr1 111876867 111877001 -85318431 + CT-rich Low_complexity Low_complexity 3 135 0 5 1438 366 241 12 12 chr1 111877972 111878056 -85317376 - PB1D10 SINE Alu 0 117 34 5 1438 362 0 62 0 chr1 111878338 111878386 -85317046 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 5 1438 870 60 0 0 chr1 111878891 111879008 -85316424 + (TG)n Simple_repeat Simple_repeat 2 118 0 5 1438 182 37 0 36 chr1 111879293 111879321 -85316111 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 5 1438 303 93 0 0 chr1 111881749 111881792 -85313640 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1438 180 179 0 0 chr1 111883006 111883045 -85312387 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 5 1438 297 250 107 0 chr1 111885148 111885232 -85310200 - PB1D10 SINE Alu -1 116 24 5 1438 22 70 0 0 chr1 111885570 111885613 -85309819 + AT_rich Low_complexity Low_complexity 1 43 0 5 1438 25 0 0 0 chr1 111885864 111885889 -85309543 + AT_rich Low_complexity Low_complexity 1 25 0 5 1438 372 22 0 0 chr1 111886659 111886704 -85308728 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1438 513 32 0 0 chr1 111888245 111888308 -85307124 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1438 27 49 0 0 chr1 111890240 111890281 -85305151 + AT_rich Low_complexity Low_complexity 1 41 0 5 1438 242 224 0 0 chr1 111891777 111891835 -85303597 + T-rich Low_complexity Low_complexity 1 58 0 5 1438 26 50 0 0 chr1 111892364 111892404 -85303028 + AT_rich Low_complexity Low_complexity 1 40 0 5 1438 29 28 0 0 chr1 111892502 111892538 -85302894 + AT_rich Low_complexity Low_complexity 1 36 0 5 1438 420 286 40 40 chr1 111892637 111892761 -85302671 + RSINE1 SINE B4 25 148 -17 5 1438 224 319 42 52 chr1 111893202 111893232 -85302200 + ID SINE ID 59 87 -137 5 1438 230 324 108 0 chr1 111893232 111893334 -85302098 + PB1D9 SINE Alu 3 115 -5 5 1438 189 0 0 0 chr1 111893604 111893625 -85301807 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1438 249 33 0 0 chr1 111893746 111893776 -85301656 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1438 23 33 0 0 chr1 111894433 111894463 -85300969 + AT_rich Low_complexity Low_complexity 1 30 0 5 1438 221 186 47 0 chr1 111894845 111894888 -85300544 - B4 SINE B4 -223 69 25 5 1438 21 36 0 0 chr1 111894998 111895026 -85300406 + AT_rich Low_complexity Low_complexity 1 28 0 5 1438 186 167 0 0 chr1 111895081 111895117 -85300315 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1438 246 192 0 0 chr1 111897684 111897736 -85297696 + (TAG)n Simple_repeat Simple_repeat 3 54 0 5 1438 611 354 24 32 chr1 111897757 111898008 -85297424 - B4A SINE B4 -42 250 2 5 1438 696 277 98 93 chr1 111898046 111898584 -85296848 - Lx7 LINE L1 -18 7678 7138 5 1438 4057 110 32 10 chr1 111899136 111899760 -85295672 - Lx3A LINE L1 0 6981 6344 5 1438 344 335 34 68 chr1 111900315 111900491 -85294941 - MLT1A LTR MaLR -20 354 185 5 1438 391 293 108 0 chr1 111900839 111901006 -85294426 + MER2 DNA MER2_type 127 311 -34 5 1438 23 54 0 0 chr1 111901014 111901051 -85294381 + AT_rich Low_complexity Low_complexity 1 37 0 5 1438 220 53 26 26 chr1 111902627 111902666 -85292766 + (TTA)n Simple_repeat Simple_repeat 2 40 0 5 1438 270 0 0 0 chr1 111903122 111903152 -85292280 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1438 6202 145 33 20 chr1 111903155 111903883 -85291549 - Lx LINE L1 -13 6641 5894 5 1438 1568 37 0 11 chr1 111903883 111904074 -85291358 + B2_Mm1a SINE B2 1 189 -4 5 1438 6202 158 12 7 chr1 111904074 111904947 -85290485 - Lx LINE L1 -761 5893 5027 5 1438 1296 236 16 32 chr1 111906047 111906420 -85289012 - Lx6 LINE L1 -1371 6089 5723 5 1438 207 0 0 0 chr1 111906423 111906446 -85288986 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 1438 916 102 65 7 chr1 111906447 111906585 -85288847 - B1_Mus2 SINE Alu 0 147 2 5 1438 320 24 24 0 chr1 111906585 111906626 -85288806 - Lx5 LINE L1 -1300 5750 5709 5 1438 348 226 129 0 chr1 111906626 111906719 -85288713 + Lx6 LINE L1 5608 5712 -1748 5 1438 219 69 0 0 chr1 111907303 111907332 -85288100 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 5 1438 244 273 70 0 chr1 111907682 111907810 -85287622 + Lx9 LINE L1 7503 7639 -5 5 1438 955 262 140 20 chr1 111908586 111908944 -85286488 - MTD LTR MaLR -1 418 18 5 1438 274 258 209 74 chr1 111909541 111909704 -85285728 - MTD LTR MaLR -41 378 194 5 1438 751 201 111 19 chr1 111909731 111909939 -85285493 - Lx LINE L1 0 7050 6824 5 1438 2116 174 39 12 chr1 111909921 111910335 -85285097 + L1_Mur2 LINE L1 5176 5600 -277 5 1438 6561 149 30 11 chr1 111910344 111912161 -85283271 - Lx LINE L1 -3 6651 4797 5 1438 555 331 11 39 chr1 111912177 111912359 -85283073 - B3A SINE B2 -16 182 6 5 1438 505 266 16 24 chr1 111913069 111913196 -85282236 - RSINE1 SINE B4 -22 143 18 5 1438 547 296 156 41 chr1 111914252 111914314 -85281118 + MTEa LTR MaLR 1 62 -317 5 1438 459 0 0 0 chr1 111914314 111914365 -85281067 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1438 547 296 156 41 chr1 111914365 111914622 -85280810 + MTEa LTR MaLR 63 357 -22 5 1438 222 0 25 50 chr1 111914632 111914672 -85280760 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1438 328 231 0 87 chr1 111915209 111915313 -85280119 - Lx4B LINE L1 -7 7051 6957 5 1438 7824 55 7 1 chr1 111915882 111917216 -85278216 - L1Md_F2 LINE L1 -1 6581 5239 5 1438 27 49 0 0 chr1 111917599 111917640 -85277792 + AT_rich Low_complexity Low_complexity 1 41 0 5 1438 2250 128 71 8 chr1 111917887 111918265 -85277167 + Lx LINE L1 6253 6654 0 5 1438 450 53 0 0 chr1 111918267 111918324 -85277108 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1438 576 42 0 0 chr1 111918322 111918393 -85277039 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 5 1438 470 298 56 39 chr1 111919753 111919931 -85275501 - RMER30 DNA MER1_type -1 201 21 5 1438 25 83 0 0 chr1 111920416 111920476 -85274956 + AT_rich Low_complexity Low_complexity 1 60 0 5 1438 476 58 24 4 chr1 111921416 111921490 -85273942 - B1_Mus2 SINE Alu 0 147 49 5 1438 1797 118 3 11 chr1 111922254 111922536 -85272896 - Lx3_Mus LINE L1 0 7009 6730 5 1438 324 0 0 0 chr1 111923333 111923369 -85272063 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1438 1200 273 96 3 chr1 111924498 111924832 -85270600 + ORR1D2 LTR MaLR 6 370 0 5 1438 243 0 0 0 chr1 111926637 111926664 -85268768 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1438 1055 80 0 0 chr1 111926664 111926801 -85268631 - B1_Mus2 SINE Alu -10 137 1 5 1438 22 0 0 0 chr1 111929851 111929873 -85265559 + AT_rich Low_complexity Low_complexity 1 22 0 5 1438 183 80 0 0 chr1 111930088 111930113 -85265319 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1438 27 62 0 0 chr1 111930269 111930317 -85265115 + AT_rich Low_complexity Low_complexity 1 48 0 5 1438 1702 89 8 12 chr1 111930376 111930653 -85264779 - L1_Mus3 LINE L1 0 6638 6384 5 1438 606 140 0 0 chr1 111930655 111930755 -85264677 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 1438 2297 168 20 0 chr1 111931076 111931476 -85263956 - Lx LINE L1 -4 6650 6243 5 1438 1542 138 0 24 chr1 111931474 111931599 -85263833 - Lx LINE L1 -530 6124 6005 5 1438 3115 61 5 10 chr1 111931599 111931997 -85263435 + MTA_Mm LTR MaLR 1 396 0 5 1438 1542 138 0 24 chr1 111931997 111932117 -85263315 - Lx LINE L1 -650 6004 5885 5 1438 3770 173 14 6 chr1 111932120 111932853 -85262579 - L1_Mur2 LINE L1 -1344 4533 3795 5 1438 429 165 10 150 chr1 111932856 111932956 -85262476 - RMER13B LTR ERVK -822 86 1 5 1438 5964 110 11 2 chr1 111932956 111933888 -85261544 - L1VL2 LINE L1 -526 3089 2150 5 1438 3229 44 0 0 chr1 111933891 111934275 -85261157 - L1Md_F2 LINE L1 -99 6483 6100 5 1438 3145 55 5 0 chr1 111934275 111934658 -85260774 - IAPEY_LTR LTR ERVK 0 385 1 5 179 21463 52 3 6 chr1 111934658 111937375 -85258057 - IAPEy-int LTR ERVK 0 7513 4804 5 1439 1386 194 0 0 chr1 111937380 111937622 -85257810 - IAPLTR4_I LTR ERVK -413 1057 816 5 1439 6377 67 6 5 chr1 111937624 111938704 -85256728 - L1Md_F3 LINE L1 -489 6095 5014 5 1439 7326 76 3 21 chr1 111938688 111939699 -85255733 + L1Md_F3 LINE L1 4059 5051 -832 5 1439 5223 142 16 42 chr1 111939697 111941542 -85253890 - L1VL2 LINE L1 -1756 1859 66 5 1439 232 268 48 67 chr1 111942184 111942288 -85253144 - Lx8 LINE L1 -84 7389 7288 5 1439 26 30 0 0 chr1 111942304 111942337 -85253095 + AT_rich Low_complexity Low_complexity 1 33 0 5 1439 219 36 0 0 chr1 111942391 111942419 -85253013 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1439 204 184 0 0 chr1 111942633 111942682 -85252750 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1439 21 0 0 0 chr1 111942682 111942703 -85252729 + AT_rich Low_complexity Low_complexity 1 21 0 5 1439 2411 198 71 13 chr1 111942806 111943339 -85252093 + RLTR25B LTR ERVK 203 766 -262 5 1439 205 197 16 47 chr1 111944053 111944117 -85251315 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 5 1439 378 0 0 0 chr1 111944994 111945036 -85250396 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1439 21 0 0 0 chr1 111946451 111946472 -85248960 + AT_rich Low_complexity Low_complexity 1 21 0 5 1439 589 279 137 31 chr1 111946577 111946832 -85248600 - Lx6 LINE L1 -89 7371 7090 5 1439 216 158 0 0 chr1 111947567 111947605 -85247827 + A-rich Low_complexity Low_complexity 1 38 0 5 1439 818 327 43 29 chr1 111947605 111947885 -85247547 + B4 SINE B4 9 292 0 5 1439 290 249 37 60 chr1 111948481 111948621 -85246811 - Lx7 LINE L1 -55 7641 7566 5 1439 365 318 60 7 chr1 111948621 111948770 -85246662 + Lx6 LINE L1 7193 7349 -111 5 1439 326 89 0 0 chr1 111951230 111951275 -85244157 - Lx2B LINE L1 -620 6380 6336 5 1439 3628 152 28 7 chr1 111951275 111951876 -85243556 + Lx2B LINE L1 6380 6993 -7 5 1439 250 262 0 16 chr1 111952455 111952517 -85242915 - ORR1E LTR MaLR -290 69 9 5 1439 369 62 0 0 chr1 111955167 111955215 -85240217 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1439 448 330 57 64 chr1 111955258 111955540 -85239892 - B4A SINE B4 -3 289 10 5 1439 21 71 0 0 chr1 111955760 111955802 -85239630 + AT_rich Low_complexity Low_complexity 1 42 0 6 1439 387 60 0 0 chr1 111956570 111956620 -85238812 + (TTG)n Simple_repeat Simple_repeat 3 52 0 6 1439 525 104 0 0 chr1 111956620 111956697 -85238735 + (TGG)n Simple_repeat Simple_repeat 1 77 0 6 1439 576 345 96 18 chr1 111956906 111957301 -85238131 - LTR73 LTR ERV1 -146 426 1 6 1439 30 59 0 0 chr1 111958003 111958054 -85237378 + AT_rich Low_complexity Low_complexity 1 51 0 6 1439 222 37 0 0 chr1 111958281 111958308 -85237124 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1439 803 61 0 9 chr1 111958395 111958510 -85236922 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 6 1439 183 80 0 0 chr1 111958926 111958951 -85236481 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1439 6730 159 30 0 chr1 111959811 111961036 -85234396 + L1_Mur2 LINE L1 3175 4436 -1441 6 1439 442 154 0 0 chr1 111961036 111961114 -85234318 + Lx2A1 LINE L1 6928 7005 -3 6 1439 1658 219 15 109 chr1 111961114 111961284 -85234148 + L1_Mur2 LINE L1 1873 2045 -3832 6 1439 273 29 0 0 chr1 111961284 111961318 -85234114 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 6 1439 1658 219 15 109 chr1 111961318 111961746 -85233686 + L1_Mur2 LINE L1 2046 2414 -3463 6 1439 24 53 0 0 chr1 111963626 111963664 -85231768 + AT_rich Low_complexity Low_complexity 1 38 0 6 1439 3183 112 50 30 chr1 111963665 111964201 -85231231 - Lx2 LINE L1 -1 6996 6450 6 1439 37 39 0 0 chr1 111964393 111964444 -85230988 + AT_rich Low_complexity Low_complexity 1 51 0 6 1439 1099 330 38 103 chr1 111965002 111965344 -85230088 - MTE-int LTR MaLR -826 754 463 6 1439 189 107 0 0 chr1 111965344 111965372 -85230060 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 1439 1099 330 38 103 chr1 111965372 111965738 -85229694 - MTE-int LTR MaLR -1118 462 92 6 1439 23 54 0 0 chr1 111965922 111965959 -85229473 + AT_rich Low_complexity Low_complexity 1 37 0 6 1439 21 0 0 0 chr1 111966000 111966021 -85229411 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 463 95 0 0 chr1 111967480 111967554 -85227878 + L1_Mus2 LINE L1 6493 6566 0 6 1439 21 0 0 0 chr1 111967561 111967582 -85227850 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 591 91 20 0 chr1 111967745 111967844 -85227588 - L1Md_F2 LINE L1 -14 6568 6468 6 1439 222 62 0 0 chr1 111968181 111968213 -85227219 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1439 5031 127 13 0 chr1 111968216 111968991 -85226441 - L1_Mus4 LINE L1 -7 6629 5845 6 1439 275 85 21 0 chr1 111969263 111969310 -85226122 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1439 2518 81 73 8 chr1 111969666 111970038 -85225394 + MTA_Mm LTR MaLR 1 396 0 6 1439 243 61 0 0 chr1 111970056 111970089 -85225343 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1439 208 98 0 73 chr1 111970091 111970146 -85225286 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 6 1439 272 278 44 0 chr1 111971206 111971296 -85224136 + MTEb LTR MaLR 286 379 0 6 1439 633 27 0 0 chr1 111971815 111971890 -85223542 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1439 2950 236 57 38 chr1 111971927 111972710 -85222722 - RMER13A LTR ERVK -15 845 1 6 1439 257 264 52 44 chr1 111972731 111972866 -85222566 - RMER17A-int LTR ERVK -47 1681 1546 6 1439 423 0 0 0 chr1 111973015 111973062 -85222370 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1439 405 0 0 0 chr1 111973062 111973106 -85222326 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1439 817 224 97 118 chr1 111973145 111973525 -85221907 - RMER17A-int LTR ERVK -369 1359 988 6 1439 619 163 68 3 chr1 111973582 111973695 -85221737 + Lx LINE L1 6159 6275 -291 6 1439 276 30 0 0 chr1 111973723 111973756 -85221676 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1439 662 205 31 56 chr1 111973757 111973917 -85221515 - ORR1D1 LTR MaLR -218 156 1 6 1439 40 21 0 0 chr1 111974107 111974154 -85221278 + AT_rich Low_complexity Low_complexity 1 47 0 6 1439 35 0 0 0 chr1 111974349 111974384 -85221048 + AT_rich Low_complexity Low_complexity 1 35 0 6 1439 315 0 0 0 chr1 111974660 111974695 -85220737 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1439 494 270 117 34 chr1 111974904 111975226 -85220206 - MER67D LTR ERV1 -352 359 1 6 1439 342 294 107 27 chr1 111975606 111975718 -85219714 - B3A SINE B2 -6 192 72 6 1439 314 348 82 41 chr1 111975912 111976155 -85219277 - MLT1A LTR MaLR -18 356 104 6 1439 387 0 0 0 chr1 111976271 111976314 -85219118 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1439 229 163 20 0 chr1 111976314 111976363 -85219069 - Lx3C LINE L1 -13 6963 6914 6 1439 366 339 94 17 chr1 111976377 111976557 -85218875 + B3 SINE B2 11 204 -12 6 1439 3986 113 19 11 chr1 111976669 111977281 -85218151 + Lx LINE L1 5903 6524 -130 6 1439 276 167 13 40 chr1 111977248 111977323 -85218109 + Lx2 LINE L1 6925 6997 0 6 1439 226 293 80 0 chr1 111977703 111977778 -85217654 + MER58C DNA MER1_type 132 212 -3 6 1439 39 60 0 0 chr1 111978459 111978526 -85216906 + AT_rich Low_complexity Low_complexity 1 67 0 6 1439 216 351 13 13 chr1 111979107 111979185 -85216247 + RSINE1 SINE B4 82 159 -6 6 1439 2716 41 20 3 chr1 111979599 111979945 -85215487 + L1Md_F3 LINE L1 6207 6558 -26 6 1439 369 0 0 0 chr1 111979945 111979986 -85215446 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 1439 465 50 0 0 chr1 111980151 111980211 -85215221 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1439 261 0 0 0 chr1 111980719 111980748 -85214684 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1439 24 53 0 0 chr1 111981941 111981979 -85213453 + AT_rich Low_complexity Low_complexity 1 38 0 6 1439 350 226 56 47 chr1 111982313 111982333 -85213099 - MTE2a LTR MaLR -5 414 392 6 1439 198 71 0 0 chr1 111982333 111982361 -85213071 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 6 1439 430 239 84 39 chr1 111982361 111982505 -85212927 - MTE2a LTR MaLR -28 391 194 6 1439 365 340 27 16 chr1 111982508 111982696 -85212736 - Lx9 LINE L1 -171 7473 7284 6 1439 21 0 0 0 chr1 111982830 111982851 -85212581 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 358 355 30 91 chr1 111983878 111984076 -85211356 - B3 SINE B2 -28 188 1 6 1439 211 325 12 0 chr1 111984370 111984453 -85210979 + (TATG)n Simple_repeat Simple_repeat 4 87 0 6 1439 194 306 0 0 chr1 111985392 111985454 -85209978 - MIRm SINE MIR 0 276 215 6 1439 222 220 34 0 chr1 111985400 111985459 -85209973 - L2c LINE L2 -10 3377 3317 6 1439 1022 297 93 21 chr1 111987310 111987698 -85207734 - MTD LTR MaLR -3 416 1 6 1439 241 155 17 17 chr1 111987798 111987857 -85207575 + (TAA)n Simple_repeat Simple_repeat 2 60 0 6 1439 253 326 43 21 chr1 111988868 111989009 -85206423 - Lx9 LINE L1 -247 7397 7254 6 1439 24 32 0 0 chr1 111989189 111989220 -85206212 + AT_rich Low_complexity Low_complexity 1 31 0 6 1439 192 254 247 27 chr1 111989625 111989698 -85205734 - L3 LINE CR1 -2292 2197 2109 6 1439 5954 120 16 20 chr1 111989848 111991393 -85204039 + L1VL4 LINE L1 50 1595 -1964 6 1439 273 344 0 0 chr1 111991569 111991662 -85203770 + ORR1D1 LTR MaLR 49 141 -233 6 1439 312 198 86 21 chr1 111991706 111991799 -85203633 + ORR1D1 LTR MaLR 267 365 -9 6 1439 349 316 126 46 chr1 111991854 111992202 -85203230 - MTEa LTR MaLR -1 378 3 6 1439 314 316 21 0 chr1 111992207 111992302 -85203130 - MTEa-int LTR MaLR -23 1557 1461 6 1439 769 339 64 18 chr1 111992517 111992799 -85202633 - MTEa-int LTR MaLR -231 1349 1055 6 1439 354 293 152 28 chr1 111992812 111993023 -85202409 - MTEa-int LTR MaLR -792 788 552 6 1439 236 350 49 28 chr1 111993191 111993335 -85202097 + MLT1F LTR MaLR 360 506 -42 6 1439 2098 55 4 0 chr1 111993765 111994038 -85201394 - L1Md_F2 LINE L1 -12 6570 6297 6 1439 239 303 16 8 chr1 111995496 111995619 -85199813 + (TA)n Simple_repeat Simple_repeat 1 124 0 6 1439 969 96 15 0 chr1 111997070 111997206 -85198226 - B1_Mus1 SINE Alu -8 140 3 6 1439 311 113 0 19 chr1 111997304 111997358 -85198074 + (ATG)n Simple_repeat Simple_repeat 2 54 0 6 1439 567 220 150 0 chr1 111998485 111998685 -85196747 - RLTR42-int LTR ERVK -1659 3863 3634 6 1439 2216 149 40 8 chr1 111998693 111999091 -85196341 - Lx LINE L1 0 6654 6244 6 1439 4288 159 12 55 chr1 111999103 111999999 -85195433 - L1_Mur2 LINE L1 -1033 4844 3987 6 1439 13673 171 27 19 chr1 112000013 112000510 -85194922 - L1VL2 LINE L1 -1905 3981 3483 1 1439 320 111 0 18 chr1 112000510 112000565 -85194867 + (CTTG)n Simple_repeat Simple_repeat 2 55 0 2 1439 13673 122 33 22 chr1 112000565 112001788 -85193644 - L1VL2 LINE L1 -432 3482 2264 1 1439 223 26 0 71 chr1 112001788 112001830 -85193602 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1439 13673 122 33 22 chr1 112001830 112002398 -85193034 - L1VL2 LINE L1 -1651 2263 1689 1 1439 230 0 33 0 chr1 112002398 112002428 -85193004 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1439 13673 171 58 13 chr1 112002428 112003669 -85191763 - L1VL2 LINE L1 -2226 1688 371 1 1439 200 265 0 0 chr1 112003740 112003789 -85191643 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1439 23 33 0 0 chr1 112003989 112004019 -85191413 + AT_rich Low_complexity Low_complexity 1 30 0 6 1439 186 103 0 0 chr1 112005130 112005159 -85190273 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1439 927 73 7 7 chr1 112005825 112005962 -85189470 + L1_Mus1 LINE L1 6431 6567 0 8 1439 18602 166 29 10 chr1 112006016 112008750 -85186682 - Lx LINE L1 -6 6648 3859 9 1439 186 43 0 0 chr1 112008750 112008773 -85186659 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1439 18602 185 26 12 chr1 112008773 112009939 -85185493 - Lx LINE L1 -2025 3858 2656 9 1439 348 24 0 0 chr1 112009939 112009980 -85185452 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 1 1439 18602 185 26 12 chr1 112009980 112010659 -85184773 - Lx LINE L1 -3228 2655 1992 9 1439 1027 42 56 0 chr1 112011401 112011543 -85183889 + L1Md_F3 LINE L1 6421 6570 -14 1 1439 591 15 0 0 chr1 112012307 112012375 -85183057 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1439 371 260 34 23 chr1 112012452 112012629 -85182803 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1439 217 200 45 15 chr1 112012660 112012726 -85182706 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1439 275 193 0 0 chr1 112013471 112013528 -85181904 - L1_Mur3 LINE L1 -828 5052 4996 1 1439 570 275 87 0 chr1 112013575 112013724 -85181708 - B3 SINE B2 0 216 55 1 1439 748 53 0 17 chr1 112013845 112013961 -85181471 + (TTTTG)n Simple_repeat Simple_repeat 2 115 0 1 1439 960 132 7 0 chr1 112013961 112014097 -85181335 - B1_Mm SINE Alu -10 137 1 1 1439 849 246 47 5 chr1 112014148 112014360 -85181072 + ID_B1 SINE B4 1 221 -3 1 1439 21 0 0 0 chr1 112016441 112016462 -85178970 + AT_rich Low_complexity Low_complexity 1 21 0 2 1439 21 0 0 0 chr1 112016712 112016733 -85178699 + AT_rich Low_complexity Low_complexity 1 21 0 2 1439 414 57 0 0 chr1 112017838 112017891 -85177541 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1439 5338 222 74 11 chr1 112019140 112020651 -85174781 - Lx5 LINE L1 -1 7049 5434 2 1439 22 88 0 0 chr1 112021560 112021617 -85173815 + AT_rich Low_complexity Low_complexity 1 57 0 2 1439 25 83 0 0 chr1 112021755 112021815 -85173617 + AT_rich Low_complexity Low_complexity 1 60 0 2 1439 16054 200 30 28 chr1 112021839 112024930 -85170502 - Lx5 LINE L1 -854 5023 1963 2 1439 4816 76 1 37 chr1 112024930 112025627 -85169805 - L1Md_F2 LINE L1 0 6582 5911 2 1439 16054 200 30 28 chr1 112025627 112026023 -85169409 - Lx5 LINE L1 -3915 1962 1566 2 1439 5303 52 3 3 chr1 112026023 112026693 -85168739 - L1Md_F2 LINE L1 -1 6581 5912 2 1439 16054 203 47 22 chr1 112026693 112027311 -85168121 - Lx5 LINE L1 -4312 1565 892 2 1439 183 80 0 0 chr1 112027532 112027557 -85167875 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1439 213 121 0 0 chr1 112027964 112027997 -85167435 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1439 525 313 74 65 chr1 112028537 112028981 -85166451 - Lx9 LINE L1 -157 7487 7040 3 1439 785 296 0 27 chr1 112029146 112029330 -85166102 + B3 SINE B2 2 180 -36 3 1439 578 74 39 8 chr1 112029333 112029443 -85165989 + L1_Mus2 LINE L1 6470 6581 -3 3 1439 5226 131 21 21 chr1 112029554 112030452 -85164980 - Lx LINE L1 -1 6653 5756 3 1439 4877 156 14 8 chr1 112030464 112031290 -85164142 - Lx3C LINE L1 -30 6946 6116 3 1439 11326 162 44 9 chr1 112031301 112031484 -85163948 - L1_Mur1 LINE L1 -957 4929 4737 3 1439 207 88 0 0 chr1 112031484 112031518 -85163914 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1439 11326 162 44 9 chr1 112031518 112032544 -85162888 - L1_Mur1 LINE L1 -1150 4736 3660 3 1439 222 62 0 0 chr1 112032544 112032576 -85162856 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 3 1439 11326 162 44 9 chr1 112032576 112033586 -85161846 - L1_Mur1 LINE L1 -2227 3659 2634 3 1439 24 32 0 0 chr1 112035492 112035523 -85159909 + AT_rich Low_complexity Low_complexity 1 31 0 3 1439 405 0 0 0 chr1 112035975 112036020 -85159412 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1439 387 0 0 0 chr1 112037049 112037092 -85158340 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1439 266 379 8 8 chr1 112037751 112037868 -85157564 - PB1D7 SINE Alu -2 118 2 4 1439 633 14 0 0 chr1 112038322 112038396 -85157036 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1439 1816 162 5 57 chr1 112039865 112040250 -85155182 + L1_Mur2 LINE L1 5042 5406 -471 4 1439 321 266 27 9 chr1 112040601 112040711 -85154721 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 1439 192 77 0 0 chr1 112040729 112040755 -85154677 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1439 28 61 0 0 chr1 112040867 112040916 -85154516 + AT_rich Low_complexity Low_complexity 1 49 0 4 1439 21 0 0 0 chr1 112041818 112041839 -85153593 + AT_rich Low_complexity Low_complexity 1 21 0 4 1439 630 71 0 0 chr1 112042373 112042457 -85152975 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1439 341 171 0 47 chr1 112042727 112042813 -85152619 - L1Md_F3 LINE L1 -2 6582 6501 4 1439 310 203 0 0 chr1 112043940 112043999 -85151433 + Lx9 LINE L1 7181 7239 -405 5 1439 359 362 89 32 chr1 112044032 112044280 -85151152 + MER90a LTR ERV1 351 612 -2 5 1439 203 167 28 0 chr1 112044503 112044539 -85150893 + GA-rich Low_complexity Low_complexity 3 39 0 5 1439 2850 187 122 3 chr1 112045304 112045910 -85149522 - RLTR33 LTR ERVK 0 678 1 5 1439 421 310 95 14 chr1 112046625 112046772 -85148660 + ID_B1 SINE B4 10 168 -56 5 1439 24 85 0 0 chr1 112047200 112047259 -85148173 + AT_rich Low_complexity Low_complexity 1 59 0 5 1439 879 349 35 55 chr1 112047357 112047869 -85147563 - MT2A LTR ERVL 0 533 32 5 1439 2359 126 3 8 chr1 112047936 112048319 -85147113 + Lx LINE L1 6274 6654 0 5 1439 270 268 54 54 chr1 112048422 112048627 -85146805 - L1M5 LINE L1 -322 5857 5653 5 1439 288 0 0 0 chr1 112049362 112049394 -85146038 + (TAA)n Simple_repeat Simple_repeat 1 32 0 5 1439 1010 143 6 0 chr1 112049399 112049574 -85145858 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 1439 198 71 0 0 chr1 112049876 112049904 -85145528 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1439 344 20 0 39 chr1 112050092 112050143 -85145289 + L1Md_F2 LINE L1 6522 6570 -12 6 1439 21 36 0 0 chr1 112050972 112051000 -85144432 + AT_rich Low_complexity Low_complexity 1 28 0 6 1439 21 0 0 0 chr1 112051305 112051326 -85144106 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 528 59 0 0 chr1 112051797 112051865 -85143567 + (A)n Simple_repeat Simple_repeat 1 68 0 6 1439 3587 157 128 53 chr1 112052477 112053264 -85142168 - RLTR13D2 LTR ERVK -10 1013 168 6 1439 1974 137 28 15 chr1 112053263 112053478 -85141954 + ORR1A1 LTR MaLR 16 238 -108 6 1439 4009 28 21 0 chr1 112053478 112053950 -85141482 - LTRIS_Mm LTR ERV1 0 482 1 6 1439 1974 137 28 15 chr1 112053950 112054061 -85141371 + ORR1A1 LTR MaLR 239 346 0 6 1439 8989 178 50 52 chr1 112054061 112054696 -85140736 + ORR1A1-int LTR MaLR 1 718 -1245 6 1439 375 23 0 0 chr1 112054696 112054740 -85140692 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 1439 8989 178 50 52 chr1 112054740 112055584 -85139848 + ORR1A1-int LTR MaLR 719 1556 -407 6 1439 886 136 29 0 chr1 112055584 112055724 -85139708 + B1_Mm SINE Alu 2 145 -2 7 1439 8989 178 50 52 chr1 112055724 112056089 -85139343 + ORR1A1-int LTR MaLR 1557 1835 -128 6 1439 3807 66 28 8 chr1 112056089 112056596 -85138836 - L1Md_F2 LINE L1 -19 6563 6047 7 1439 2342 172 16 25 chr1 112056596 112056715 -85138717 + ORR1A1-int LTR MaLR 1836 1961 -2 6 1439 1998 177 3 3 chr1 112056717 112057063 -85138369 + ORR1A1 LTR MaLR 1 346 0 6 1439 1401 220 22 22 chr1 112057219 112057539 -85137893 - RMER6C LTR ERVK 0 690 371 7 1439 472 179 16 131 chr1 112057624 112057746 -85137686 - MT2B LTR ERVL -313 288 181 7 1439 2133 125 6 14 chr1 112058392 112058748 -85136684 - Lx LINE L1 0 6654 6302 7 1439 207 269 110 49 chr1 112060522 112060604 -85134828 + MER5A DNA MER1_type 101 187 -2 7 1439 228 35 0 0 chr1 112061717 112061746 -85133686 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1439 196 53 26 26 chr1 112061873 112061912 -85133520 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1439 27 0 0 0 chr1 112063043 112063070 -85132362 + AT_rich Low_complexity Low_complexity 1 27 0 7 1439 573 104 4 5 chr1 112063084 112063183 -85132249 - L1_Mus2 LINE L1 -17 6567 6470 7 179 22040 108 19 5 chr1 112063184 112067248 -85128184 - L1_Mus1 LINE L1 0 6567 2446 8 1440 8496 20 1 0 chr1 112067248 112068205 -85127227 + RLTR13A2 LTR ERVK 1 958 0 8 1440 49220 18 6 4 chr1 112068205 112072188 -85123244 + ETnERV3-int LTR ERVK 1 3978 -1830 8 1440 243 0 0 0 chr1 112072188 112072215 -85123217 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 8 1440 49220 18 6 4 chr1 112072215 112074023 -85121409 + ETnERV3-int LTR ERVK 3979 5807 -1 8 1440 8496 20 1 0 chr1 112074028 112074985 -85120447 + RLTR13A2 LTR ERVK 1 958 0 8 1440 7089 171 43 112 chr1 112074985 112077315 -85118117 - L1_Mus1 LINE L1 -3432 2451 261 8 1440 7258 168 56 3 chr1 112077323 112078663 -85116769 - Lx2B LINE L1 -3 6997 5587 8 1440 392 382 42 25 chr1 112078683 112078922 -85116510 + B4A SINE B4 22 264 -28 8 1440 483 18 0 0 chr1 112079194 112079250 -85116182 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 1440 384 40 0 0 chr1 112079516 112079566 -85115866 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 8 1440 813 217 10 10 chr1 112080154 112080359 -85115073 - L1_Mur2 LINE L1 -1724 4153 3949 8 1440 963 184 91 14 chr1 112080353 112080574 -85114858 - L1_Mur2 LINE L1 -1859 4018 3781 8 1440 398 203 0 0 chr1 112080574 112080648 -85114784 - L1_Mur2 LINE L1 -2224 3653 3580 8 1440 234 191 0 0 chr1 112080648 112080690 -85114742 + RLTR17 LTR ERVK 555 596 -96 8 1440 1489 173 79 40 chr1 112080747 112081008 -85114424 + MYSERV16_I-int LTR ERVK 1230 1508 -818 8 1440 339 25 0 0 chr1 112081008 112081048 -85114384 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1440 321 68 0 0 chr1 112081048 112081091 -85114341 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1440 1489 173 79 40 chr1 112081091 112081208 -85114224 + MYSERV16_I-int LTR ERVK 1509 1623 -703 8 1440 299 285 43 74 chr1 112081410 112081573 -85113859 + RNLTR23 LTR ERVK 479 636 -6 9 1440 1512 17 0 0 chr1 112081624 112081804 -85113628 - MTA_Mm LTR MaLR 0 396 217 9 1440 3625 12 7 0 chr1 112081807 112082222 -85113210 - L1Md_A LINE L1 0 6582 6165 9 1440 9036 9 0 0 chr1 112082222 112083516 -85111916 + L1Md_A LINE L1 4866 6159 -423 9 1440 1990 4 0 0 chr1 112083516 112083748 -85111684 - MTA_Mm LTR MaLR -164 232 1 9 1440 9176 25 18 1 chr1 112083748 112084828 -85110604 - MTA_Mm-int LTR MaLR 0 1098 1 9 1440 3453 30 0 0 chr1 112084828 112085224 -85110208 - MTA_Mm LTR MaLR 0 396 1 9 1440 322 194 0 0 chr1 112085251 112085313 -85110119 + L1Md_F LINE L1 267 328 -6191 9 1440 1575 96 0 0 chr1 112085313 112085531 -85109901 + L1Md_F LINE L1 809 1026 -5493 9 1440 20899 89 35 13 chr1 112085530 112089385 -85106047 + L1Md_F2 LINE L1 331 4269 -1614 9 1440 3545 83 2 0 chr1 112089385 112089857 -85105575 + L1Md_F2 LINE L1 5114 5586 -297 9 1440 7706 60 4 1 chr1 112089858 112090875 -85104557 + L1Md_F2 LINE L1 5588 6582 0 9 1440 534 103 0 0 chr1 112091109 112091187 -85104245 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 9 1440 8851 126 16 6 chr1 112091187 112092248 -85103184 - Lx3_Mus LINE L1 -25 6984 5905 9 1440 189 0 0 0 chr1 112092248 112092269 -85103163 + (TGG)n Simple_repeat Simple_repeat 1 21 0 9 1440 30525 105 11 12 chr1 112092269 112093530 -85101902 - Lx3_Mus LINE L1 -1105 5904 4667 9 1440 1394 92 77 5 chr1 112093530 112093738 -85101694 + L1_Mus1 LINE L1 6345 6567 0 1 1440 30525 121 35 20 chr1 112093738 112098027 -85097405 - Lx3_Mus LINE L1 -1220 4666 13 9 1440 386 245 39 65 chr1 112098028 112098181 -85097251 - Lx6 LINE L1 -4 7456 7308 1 1440 25 0 0 0 chr1 112098201 112098226 -85097206 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 250 239 70 0 chr1 112099669 112099740 -85095692 - MTE2a LTR MaLR -65 354 279 1 1440 371 328 53 32 chr1 112099756 112099945 -85095487 - MTE2a LTR MaLR -177 202 10 1 1440 250 329 40 85 chr1 112099952 112100128 -85095304 - MER2 DNA MER2_type -177 168 1 1 1440 477 0 0 0 chr1 112100384 112100437 -85094995 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1440 530 295 46 70 chr1 112100539 112100841 -85094591 + RLTR15 LTR ERVK 1 295 -64 1 1440 305 343 23 34 chr1 112100897 112101072 -85094360 + Lx8 LINE L1 7034 7206 -267 1 1440 2568 209 8 156 chr1 112101084 112101950 -85093482 - L1_Mur1 LINE L1 -2371 5414 4655 1 1440 7174 119 9 2 chr1 112101949 112103519 -85091913 + L1_Mus3 LINE L1 5060 6638 0 1 1440 4376 164 10 2 chr1 112103523 112104308 -85091124 - L1_Mur2 LINE L1 -949 4928 4138 1 1440 5703 173 34 8 chr1 112104307 112105410 -85090022 + Lx2 LINE L1 5372 6490 -507 1 1440 245 29 29 0 chr1 112105410 112105444 -85089988 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1440 5703 170 34 10 chr1 112105444 112105580 -85089852 + Lx2 LINE L1 6491 6644 -353 1 1440 274 182 18 0 chr1 112105567 112105622 -85089810 + Lx2 LINE L1 6763 6818 -179 1 1440 637 132 53 3 chr1 112105623 112105735 -85089697 + B2_Mm2 SINE B2 57 174 -21 1 1440 291 136 0 17 chr1 112105794 112105854 -85089578 + B2_Mm2 SINE B2 127 185 -10 1 1440 5235 212 23 14 chr1 112106322 112107470 -85087962 - Lx2B LINE L1 -9 7049 5796 1 1440 3735 210 47 48 chr1 112107485 112108384 -85087048 - RMER13B LTR ERVK -10 898 1 1 1440 1406 183 14 14 chr1 112108384 112108667 -85086765 - L1_Mur2 LINE L1 -83 5794 5512 1 1440 237 196 0 0 chr1 112109257 112109308 -85086124 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1440 180 152 0 0 chr1 112109409 112109442 -85085990 + T-rich Low_complexity Low_complexity 1 33 0 1 1440 1127 301 66 9 chr1 112110501 112110850 -85084582 + MTD LTR MaLR 1 369 -50 1 1440 268 322 65 92 chr1 112111144 112111404 -85084028 + MLT1E2 LTR MaLR 277 529 -125 1 1440 1356 213 101 35 chr1 112111648 112112023 -85083409 - RLTR41 LTR ERV1 0 446 1 1 1440 1100 49 7 0 chr1 112112227 112112370 -85083062 + (TCCC)n Simple_repeat Simple_repeat 3 146 0 1 1440 534 16 0 0 chr1 112112620 112112683 -85082749 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1440 25 0 0 0 chr1 112113048 112113073 -85082359 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 1136 197 29 25 chr1 112113079 112113355 -85082077 - Lx3A LINE L1 -1 6980 6704 1 1440 319 258 100 15 chr1 112114567 112114697 -85080735 + Charlie4a DNA MER1_type 109 249 -259 1 1440 1067 89 7 0 chr1 112114849 112114995 -85080437 + B1_Mm SINE Alu 1 147 0 1 1440 501 17 0 0 chr1 112115365 112115423 -85080009 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1440 228 382 26 0 chr1 112115430 112115506 -85079926 - B3A SINE B2 -48 150 73 1 1440 243 411 21 0 chr1 112115561 112115678 -85079754 + B1_Mus1 SINE Alu 13 138 -11 1 1440 495 33 0 0 chr1 112115699 112115760 -85079672 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1440 647 256 126 0 chr1 112116230 112116421 -85079011 + B3 SINE B2 1 215 -1 1 1440 1747 65 4 0 chr1 112116514 112116743 -85078689 - L1_Mus2 LINE L1 -1 6565 6336 1 1440 1008 326 123 38 chr1 112116800 112117432 -85078000 - Lx8 LINE L1 -143 7330 6645 1 1440 362 303 148 0 chr1 112118155 112118277 -85077155 - MTEb-int LTR MaLR -496 1084 945 1 1440 694 336 33 33 chr1 112118268 112118603 -85076829 - MTEb-int LTR MaLR -1229 351 17 1 1440 817 281 139 55 chr1 112118630 112118976 -85076456 - MTEb LTR MaLR -2 377 3 1 1440 380 319 178 63 chr1 112120049 112120464 -85074968 - Lx8 LINE L1 0 7473 7011 1 1440 238 311 54 0 chr1 112120531 112120605 -85074827 - Lx8 LINE L1 -553 6920 6843 1 1440 1551 266 63 39 chr1 112120609 112121129 -85074303 - RMER19C LTR ERVK 0 611 79 1 1440 1744 282 27 23 chr1 112121156 112121635 -85073797 + Lx6 LINE L1 6980 7460 0 1 1440 243 0 0 0 chr1 112121664 112121691 -85073741 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1440 1101 58 0 0 chr1 112121691 112121829 -85073603 - B1_Mm SINE Alu -9 138 1 1 1440 331 279 83 103 chr1 112122014 112122266 -85073166 - L1ME3A LINE L1 -277 5896 5650 1 1440 192 158 0 0 chr1 112122962 112123000 -85072432 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1440 261 0 0 0 chr1 112123236 112123265 -85072167 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1440 694 211 151 84 chr1 112123283 112123521 -85071911 - Lx3C LINE L1 -7 6969 6716 1 1440 2378 124 13 41 chr1 112123500 112124153 -85071279 - L1VL4 LINE L1 -2299 1260 634 1 1440 6141 128 48 4 chr1 112124168 112125522 -85069910 - L1_Mus4 LINE L1 0 6636 5222 1 1440 9294 165 3 6 chr1 112125521 112126590 -85068842 + L1_Mur2 LINE L1 3536 4604 -1273 1 1440 2455 88 12 6 chr1 112126590 112126934 -85068498 + ORR1A1 LTR MaLR 1 346 0 1 1440 9294 165 3 6 chr1 112126934 112127514 -85067918 + L1_Mur2 LINE L1 4605 5180 -697 1 1440 992 207 42 75 chr1 112127510 112127750 -85067682 - L1VL4 LINE L1 -5671 631 400 1 1440 492 235 141 0 chr1 112127749 112127777 -85067655 - L1_Mur2 LINE L1 -2960 2917 2869 1 1440 1548 11 0 0 chr1 112127777 112127955 -85067477 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1440 698 158 0 0 chr1 112127955 112128075 -85067357 - MusHAL1 LINE L1 -1043 1669 1550 1 1440 324 354 75 24 chr1 112128075 112128327 -85067105 - RLTR9A LTR ERVK 0 368 104 1 1440 2059 176 88 81 chr1 112128948 112129651 -85065781 - RLTR45-int LTR ERVK -4508 2736 2083 1 1440 333 102 0 0 chr1 112129792 112129851 -85065581 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1440 568 281 156 52 chr1 112130154 112130481 -85064951 - RLTR9A LTR ERVK -1 367 7 1 1440 10525 58 3 0 chr1 112130481 112131818 -85063614 - L1_Mm LINE L1 -359 5524 4184 1 1440 4613 64 2 8 chr1 112131818 112132420 -85063012 + L1Md_F2 LINE L1 5985 6582 0 1 1440 6947 168 69 23 chr1 112132441 112132696 -85062736 - L1_Mur1 LINE L1 -3123 2763 2458 1 1440 188 34 0 33 chr1 112132696 112132726 -85062706 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1440 6947 173 71 18 chr1 112132726 112134443 -85060989 - L1_Mur1 LINE L1 -3429 2457 243 1 1440 4144 108 38 77 chr1 112134443 112135224 -85060208 - RMER17A LTR ERVK 0 751 1 1 1440 372 295 74 27 chr1 112135224 112135455 -85059977 - L1_Mur1 LINE L1 -6246 738 679 1 1440 1981 133 12 60 chr1 112135770 112136105 -85059327 + ORR1A2 LTR MaLR 9 327 0 1 1440 1229 260 4 18 chr1 112136452 112136730 -85058702 + RMER13A LTR ERVK 587 860 0 1 1440 1800 159 29 6 chr1 112137048 112137395 -85058037 + RLTR15 LTR ERVK 1 355 -4 1 1440 275 250 69 0 chr1 112137967 112138039 -85057393 - ORR1B1 LTR MaLR -287 107 31 1 1440 607 120 9 9 chr1 112138143 112138252 -85057180 + L1_Mus2 LINE L1 6456 6564 -2 1 1440 1044 234 14 0 chr1 112138285 112138507 -85056925 + URR1B DNA MER1_type 1 225 0 1 1440 195 42 0 0 chr1 112138833 112138857 -85056575 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1440 345 125 0 0 chr1 112138857 112138912 -85056520 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1440 207 0 0 0 chr1 112140985 112141008 -85054424 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1440 272 262 45 53 chr1 112141024 112141157 -85054275 - Lx7 LINE L1 0 7696 7565 1 1440 242 273 102 0 chr1 112141612 112141700 -85053732 - MIRb SINE MIR -87 181 85 1 1440 3174 129 51 0 chr1 112141810 112142297 -85053135 + Lx LINE L1 6024 6535 -119 1 1440 252 392 21 0 chr1 112144320 112144430 -85051002 + L2c LINE L2 3226 3345 -30 1 1440 288 0 0 0 chr1 112144972 112145004 -85050428 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1440 240 35 0 0 chr1 112145338 112145367 -85050065 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1440 23 33 0 0 chr1 112145424 112145454 -85049978 + AT_rich Low_complexity Low_complexity 1 30 0 1 1440 252 0 0 0 chr1 112145753 112145781 -85049651 + (TGG)n Simple_repeat Simple_repeat 1 28 0 1 1440 288 0 0 0 chr1 112145782 112145814 -85049618 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1440 5685 169 21 5 chr1 112145817 112146868 -85048564 - Lx3C LINE L1 -2 6974 5907 1 1440 1699 155 13 0 chr1 112146868 112147174 -85048258 - L1_Mur1 LINE L1 -934 4952 4631 1 1440 298 0 48 0 chr1 112147174 112147216 -85048216 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1440 1271 236 24 9 chr1 112147216 112147247 -85048185 - L1_Mur1 LINE L1 -1250 4630 4603 1 1440 402 208 0 111 chr1 112147248 112147356 -85048076 + L1VL1 LINE L1 4 99 -6323 1 1440 15519 206 45 76 chr1 112147333 112149219 -85046213 + L1Md_F LINE L1 270 2255 -3622 1 1440 4682 73 0 3 chr1 112149219 112149836 -85045596 - L1Md_F2 LINE L1 0 6582 5968 1 1440 17657 136 8 36 chr1 112149836 112153203 -85042229 + L1Md_F LINE L1 2256 5151 -732 1 1440 1816 99 55 10 chr1 112153201 112153508 -85041924 - L1_Mur1 LINE L1 -1812 4074 3754 1 1440 252 307 45 89 chr1 112153905 112153919 -85041513 - B2_Mm2 SINE B2 -24 171 160 1 1440 749 84 0 8 chr1 112153919 112154039 -85041393 + (TC)n Simple_repeat Simple_repeat 1 119 0 1 1440 252 307 45 89 chr1 112154039 112154203 -85041229 - B2_Mm2 SINE B2 -36 159 1 1 1440 230 187 29 29 chr1 112154422 112154560 -85040872 + T-rich Low_complexity Low_complexity 3 140 0 1 1440 583 309 45 71 chr1 112155052 112155201 -85040231 + MTD LTR MaLR 1 137 -282 1 1440 2897 103 9 12 chr1 112155201 112155623 -85039809 - BGLII LTR ERVK 0 421 1 1 1440 583 309 45 71 chr1 112155623 112155783 -85039649 + MTD LTR MaLR 138 302 -117 1 1440 318 151 0 0 chr1 112155786 112155839 -85039593 + HAL1-3A_ME LINE L1 1975 2027 -831 1 1440 580 141 29 7 chr1 112155839 112155975 -85039457 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1440 22 94 0 0 chr1 112156157 112156221 -85039211 + AT_rich Low_complexity Low_complexity 1 64 0 1 1440 24 0 0 0 chr1 112157160 112157184 -85038248 + AT_rich Low_complexity Low_complexity 1 24 0 1 1440 2035 206 52 2 chr1 112157476 112157899 -85037533 + RMER6A LTR ERVK 1 444 -312 1 1440 328 230 31 40 chr1 112157965 112158191 -85037241 + RMER17D LTR ERVK 277 500 -389 1 1440 246 265 44 0 chr1 112158165 112158233 -85037199 + RMER6A LTR ERVK 416 486 -234 1 1440 214 235 0 29 chr1 112158299 112158369 -85037063 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1440 705 322 14 0 chr1 112158552 112158763 -85036669 - B3 SINE B2 -2 214 1 1 1440 251 266 89 25 chr1 112159226 112159384 -85036048 - L1MA6 LINE L1 -105 6195 6028 2 1440 29 28 0 0 chr1 112159526 112159562 -85035870 + AT_rich Low_complexity Low_complexity 1 36 0 2 1440 278 262 213 0 chr1 112159788 112159952 -85035480 - L1MA6 LINE L1 -833 5458 5260 2 1440 36 23 0 0 chr1 112160106 112160149 -85035283 + AT_rich Low_complexity Low_complexity 1 43 0 2 1440 2079 230 28 4 chr1 112160390 112160848 -85034584 - Lx4A LINE L1 0 7058 6590 2 1440 2553 149 4 26 chr1 112160844 112161299 -85034133 - L1_Mm LINE L1 -340 5543 5099 2 1440 4557 76 0 0 chr1 112161299 112161894 -85033538 - L1Md_T LINE L1 0 6582 5988 2 1440 3333 18 0 0 chr1 112161894 112162338 -85033094 + L1Md_T LINE L1 5532 5975 -607 2 1440 1642 170 0 0 chr1 112162340 112162622 -85032810 - L1_Mm LINE L1 -772 5111 4830 2 1440 7466 94 14 4 chr1 112162621 112163719 -85031713 + L1_Mus3 LINE L1 5530 6638 0 2 1440 840 175 0 0 chr1 112163719 112163879 -85031553 + GA-rich Low_complexity Low_complexity 1 160 0 2 1440 4809 170 60 7 chr1 112163909 112165144 -85030288 - Lx4A LINE L1 -492 6566 5257 2 1440 428 271 23 113 chr1 112165160 112165293 -85030139 - B1_Mus1 SINE Alu 0 148 28 2 1440 919 338 68 35 chr1 112168747 112169548 -85025884 + Lx7 LINE L1 6651 7472 -1 2 1440 239 179 90 0 chr1 112169743 112169821 -85025611 + (CATTT)n Simple_repeat Simple_repeat 2 86 0 2 1440 648 368 32 39 chr1 112170063 112170346 -85025086 + B4A SINE B4 1 281 -11 2 1440 191 36 36 0 chr1 112170406 112170434 -85024998 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1440 396 59 0 0 chr1 112171803 112171854 -85023578 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1440 188 313 113 0 chr1 112172510 112172625 -85022807 + L2a LINE L2 3243 3370 -56 2 1440 1318 247 39 18 chr1 112172798 112173136 -85022296 + ORR1D1 LTR MaLR 30 374 0 2 1440 411 92 0 0 chr1 112173285 112173350 -85022082 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1440 333 349 112 16 chr1 112173702 112174188 -85021244 + L1MCb LINE L1 844 1466 -5285 2 1440 226 292 137 14 chr1 112174278 112174497 -85020935 + L1MCb LINE L1 1571 1816 -4935 2 1440 202 263 0 17 chr1 112174745 112174803 -85020629 + T-rich Low_complexity Low_complexity 2 58 0 2 1440 438 172 51 6 chr1 112175110 112175268 -85020164 + (TA)n Simple_repeat Simple_repeat 1 165 0 2 1440 23 0 0 0 chr1 112175304 112175327 -85020105 + AT_rich Low_complexity Low_complexity 1 23 0 2 1440 844 157 13 42 chr1 112175338 112175530 -85019902 - B1_Mus1 SINE Alu 0 311 1 2 1440 1386 304 64 12 chr1 112175530 112176029 -85019403 - Lx6 LINE L1 -24 7436 6912 2 1440 405 207 98 0 chr1 112176058 112176140 -85019292 - Lx6 LINE L1 -615 6845 6756 2 1440 584 254 0 28 chr1 112176293 112176435 -85018997 + B1_Mur3 SINE Alu 5 142 -7 2 1440 413 361 62 12 chr1 112176709 112176953 -85018479 + MER92C LTR ERV1 297 552 -2 2 1440 200 200 0 0 chr1 112177187 112177222 -85018210 + (TATG)n Simple_repeat Simple_repeat 4 38 0 2 1440 312 340 85 27 chr1 112177222 112177446 -85017986 + Tigger6b DNA MER2_type 1348 1584 -13 2 1440 256 164 30 0 chr1 112177863 112177930 -85017502 + (TTA)n Simple_repeat Simple_repeat 1 69 0 2 1440 200 97 0 31 chr1 112177931 112177963 -85017469 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1440 350 287 91 18 chr1 112177993 112178103 -85017329 - B4A SINE B4 -10 282 165 2 1440 1614 215 59 8 chr1 112178103 112178478 -85016954 + ORR1B1 LTR MaLR 1 394 0 2 1440 4699 231 89 70 chr1 112178478 112179396 -85016036 + ORR1B1-int LTR MaLR 1 996 -513 2 1440 528 147 9 9 chr1 112179396 112179506 -85015926 - Lx LINE L1 -2 6652 6543 2 1440 4699 231 89 70 chr1 112179506 112179900 -85015532 + ORR1B1-int LTR MaLR 997 1343 -166 2 1440 336 48 0 0 chr1 112179900 112179942 -85015490 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1440 4699 231 89 70 chr1 112179942 112180107 -85015325 + ORR1B1-int LTR MaLR 1344 1508 -1 2 1440 434 232 32 0 chr1 112180113 112180208 -85015224 + ORR1B1 LTR MaLR 6 103 -264 2 1440 1093 252 81 7 chr1 112180413 112180685 -85014747 + ORR1B1 LTR MaLR 95 386 -8 2 1440 2349 199 13 17 chr1 112181103 112181564 -85013868 - Lx4A LINE L1 -3 7055 6597 2 1440 2334 100 21 0 chr1 112181560 112181899 -85013533 + L1_Mus1 LINE L1 6222 6567 0 2 1440 325 136 0 0 chr1 112181912 112181956 -85013476 - Lx4A LINE L1 -451 6607 6564 2 1440 22 56 0 0 chr1 112182084 112182120 -85013312 + AT_rich Low_complexity Low_complexity 1 36 0 2 1440 3360 108 4 6 chr1 112182140 112182623 -85012809 + Lx3_Mus LINE L1 6445 6926 -83 2 1440 7518 171 22 38 chr1 112182625 112184288 -85011144 - MusHAL1 LINE L1 -985 1727 91 2 1440 438 238 0 0 chr1 112184285 112184386 -85011046 - L1VL4 LINE L1 -5560 742 642 2 1440 230 208 19 0 chr1 112184373 112184426 -85011006 - L1VL2 LINE L1 -5838 497 444 2 1440 35190 82 1 9 chr1 112185031 112191428 -85004004 - L1Md_F2 LINE L1 -1 6581 247 2 1440 30 0 0 0 chr1 112191476 112191506 -85003926 + AT_rich Low_complexity Low_complexity 1 30 0 2 1440 260 102 0 20 chr1 112191789 112191839 -85003593 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1440 446 33 17 0 chr1 112191840 112191900 -85003532 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1440 204 245 0 0 chr1 112193666 112193715 -85001717 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 1440 489 47 0 0 chr1 112193725 112193789 -85001643 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1440 217 176 20 0 chr1 112194137 112194188 -85001244 + A-rich Low_complexity Low_complexity 5 56 0 2 1440 217 68 45 0 chr1 112194588 112194632 -85000800 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1440 393 327 9 6 chr1 112194647 112194852 -85000580 - Lx7 LINE L1 -258 7215 6998 2 1440 5818 148 92 46 chr1 112194907 112195356 -85000076 + L1_Mur1 LINE L1 2401 2813 -3073 2 1440 243 0 0 0 chr1 112195356 112195383 -85000049 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1440 5818 148 92 46 chr1 112195383 112196072 -84999360 + L1_Mur1 LINE L1 2814 3599 -2287 2 1440 2120 55 277 0 chr1 112196072 112196382 -84999050 - MTA_Mm LTR MaLR 0 396 1 2 1440 5818 148 92 46 chr1 112196382 112196492 -84998940 + L1_Mur1 LINE L1 3600 3708 -2178 2 1440 329 241 38 0 chr1 112196492 112196571 -84998861 - RLTR17 LTR ERVK -610 82 1 2 22 4549 179 99 5 chr1 112196572 112197647 -84997785 - MYSERV16_I-int LTR ERVK -1 2325 1149 2 1441 250 274 79 34 chr1 112197676 112197810 -84997622 - RMER4A LTR ERVK -8 577 322 2 1441 814 269 56 81 chr1 112197829 112198274 -84997158 - MYSERV16_I-int LTR ERVK -1417 909 476 2 1441 586 129 0 25 chr1 112198284 112198403 -84997029 + (TAAA)n Simple_repeat Simple_repeat 3 118 0 2 1441 7390 279 50 53 chr1 112198492 112200136 -84995296 - MYSERV-int LTR ERVK -1915 4635 2962 2 1441 369 23 0 0 chr1 112200136 112200180 -84995252 - L1_Mm LINE L1 -1339 4544 4501 2 1441 3280 60 9 7 chr1 112200180 112200615 -84994817 + L1Md_F3 LINE L1 6135 6570 -14 2 1441 7390 279 50 53 chr1 112200615 112201681 -84993751 - MYSERV-int LTR ERVK -3589 2961 1889 2 1441 188 35 35 0 chr1 112201684 112201713 -84993719 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 1441 1348 305 27 39 chr1 112201724 112202317 -84993115 - MYSERV-int LTR ERVK -4661 1889 1304 2 1441 376 337 132 94 chr1 112202472 112202662 -84992770 + MTC LTR MaLR 1 203 -218 2 1441 553 266 14 77 chr1 112202662 112202882 -84992550 + B3 SINE B2 1 206 -10 2 1441 376 337 132 94 chr1 112202882 112203094 -84992338 + MTC LTR MaLR 204 418 -3 2 1441 994 215 65 4 chr1 112203101 112203377 -84992055 - Lx3C LINE L1 -744 6232 5940 2 1441 243 0 0 0 chr1 112203464 112203491 -84991941 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1441 396 0 0 0 chr1 112203494 112203538 -84991894 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1441 1861 142 6 77 chr1 112204053 112204405 -84991027 - ORR1A2 LTR MaLR 0 327 1 2 1441 826 269 100 33 chr1 112204488 112204819 -84990613 - RLTR11A2 LTR ERVK -24 503 151 2 1441 207 125 0 0 chr1 112204825 112204865 -84990567 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1441 20761 155 10 6 chr1 112204876 112207933 -84987499 - L1_Mus3 LINE L1 -7 6631 3569 2 1441 5502 75 0 1 chr1 112207933 112208657 -84986775 - L1Md_F2 LINE L1 -1 6581 5859 2 1441 20761 169 12 9 chr1 112208657 112210193 -84985239 - L1_Mus3 LINE L1 -2315 3568 2020 2 1441 9538 91 2 7 chr1 112210203 112212192 -84983240 + L1Md_F2 LINE L1 549 2484 -3399 2 1441 7082 80 3 0 chr1 112212184 112213131 -84982301 + L1Md_F2 LINE L1 4636 5585 -298 2 1441 7223 71 17 16 chr1 112213132 112214115 -84981317 + L1Md_F2 LINE L1 5587 6570 -12 2 1441 3816 112 12 21 chr1 112214118 112214692 -84980740 + L1_Mus1 LINE L1 5998 6566 -1 2 1441 5072 150 16 20 chr1 112214717 112216193 -84979239 - L1VL4 LINE L1 -1886 1673 204 2 1441 452 206 63 113 chr1 112216199 112216358 -84979074 - RLTR11A2 LTR ERVK -302 151 1 2 1441 1840 195 38 2 chr1 112216445 112216840 -84978592 + L1_Mm LINE L1 3653 4061 -1822 2 1441 12606 171 68 19 chr1 112216834 112220985 -84974447 + L1VL2 LINE L1 1076 5589 -297 2 1441 7863 55 5 5 chr1 112220985 112221470 -84973962 + L1Md_F2 LINE L1 5587 6072 -510 2 1441 4326 12 0 0 chr1 112221470 112221952 -84973480 + LTRIS_Mm LTR ERV1 1 482 0 2 1441 7863 55 5 5 chr1 112221952 112222531 -84972901 + L1Md_F2 LINE L1 6073 6582 0 2 1441 194 0 0 37 chr1 112223158 112223185 -84972247 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1441 987 249 48 8 chr1 112223185 112223436 -84971996 - Lx6 LINE L1 -25 7435 7175 2 1441 1073 82 7 0 chr1 112223853 112224000 -84971432 + B1_Mus1 SINE Alu 1 148 0 2 1441 370 92 0 38 chr1 112224000 112224079 -84971353 + (CAAAAA)n Simple_repeat Simple_repeat 3 78 0 2 1441 1771 176 12 67 chr1 112224441 112224873 -84970559 + RMER17C LTR ERVK 3 410 0 2 1441 404 67 17 0 chr1 112225424 112225484 -84969948 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1441 2688 18 95 6 chr1 112225692 112226029 -84969403 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1441 6229 108 135 48 chr1 112226029 112227231 -84968201 + IAPEz-int LTR ERVK 8 1313 -5168 2 1441 28914 20 1 1 chr1 112227230 112230500 -84964932 + IAPEz-int LTR ERVK 3210 6481 0 2 1441 2688 18 95 6 chr1 112230500 112230837 -84964595 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1441 2160 278 45 35 chr1 112230845 112231628 -84963804 - Lx9 LINE L1 -305 7339 6549 2 1441 40 73 0 0 chr1 112231819 112231901 -84963531 + AT_rich Low_complexity Low_complexity 1 82 0 2 1441 24 53 0 0 chr1 112232234 112232272 -84963160 + AT_rich Low_complexity Low_complexity 1 38 0 2 1441 36 77 0 0 chr1 112232452 112232530 -84962902 + AT_rich Low_complexity Low_complexity 1 78 0 2 1441 360 0 0 0 chr1 112232733 112232773 -84962659 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1441 1023 87 0 0 chr1 112232787 112232925 -84962507 - B1_Mus1 SINE Alu 0 148 11 2 1441 22 35 0 0 chr1 112232929 112232958 -84962474 + AT_rich Low_complexity Low_complexity 1 29 0 2 1441 729 254 28 56 chr1 112232985 112233351 -84962081 + RLTR10D LTR ERVK 1 411 0 2 1441 27 73 0 0 chr1 112233410 112233465 -84961967 + AT_rich Low_complexity Low_complexity 1 55 0 2 1441 355 330 0 11 chr1 112233774 112233869 -84961563 + Lx8 LINE L1 7237 7330 -143 2 1441 6780 177 22 34 chr1 112234030 112235727 -84959705 + L1VL2 LINE L1 278 1965 -1650 2 1441 5989 46 4 1 chr1 112235727 112236465 -84958967 + L1Md_F3 LINE L1 5832 6571 -13 2 1441 6780 159 11 42 chr1 112236465 112236843 -84958589 + L1VL2 LINE L1 1966 2324 -1291 2 1441 6592 214 8 84 chr1 112236847 112237099 -84958333 - L1_Mur1 LINE L1 -983 4900 4664 2 1441 1018 92 42 0 chr1 112237099 112237241 -84958191 + B1_Mus1 SINE Alu 1 148 0 2 1441 8980 130 7 33 chr1 112237241 112238987 -84956445 - L1_Mur1 LINE L1 -1220 4663 3054 2 1441 4610 200 23 53 chr1 112238979 112240780 -84954652 - L1_Mur1 LINE L1 -4106 1780 35 2 1441 346 199 24 10 chr1 112240803 112240894 -84954538 - ORR1B1-int LTR MaLR -882 627 499 2 1441 36341 32 3 4 chr1 112240894 112246048 -84949384 - L1Md_T LINE L1 -3 6579 1432 2 1441 2157 233 25 29 chr1 112246048 112246569 -84948863 - ORR1B1-int LTR MaLR -1444 519 1 2 1441 901 255 28 32 chr1 112246566 112246846 -84948586 - ORR1B1 LTR MaLR -1 393 53 2 1441 261 0 0 0 chr1 112246895 112246924 -84948508 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1441 1381 276 127 52 chr1 112246932 112247564 -84947868 + Lx6 LINE L1 6756 7434 -26 3 1441 22 35 0 0 chr1 112247571 112247600 -84947832 + AT_rich Low_complexity Low_complexity 1 29 0 3 1441 1147 325 110 26 chr1 112247968 112249094 -84946338 + L1MC3 LINE L1 5601 6821 -964 3 1441 964 136 0 0 chr1 112249564 112249711 -84945721 + B1_Mus1 SINE Alu 2 148 0 3 1441 264 91 0 0 chr1 112249713 112249757 -84945675 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1441 23 33 0 0 chr1 112250049 112250079 -84945353 + AT_rich Low_complexity Low_complexity 1 30 0 3 1441 777 319 113 15 chr1 112250100 112250428 -84945004 + ORR1D2 LTR MaLR 7 366 -4 3 1441 24 32 0 0 chr1 112250446 112250477 -84944955 + AT_rich Low_complexity Low_complexity 1 31 0 3 1441 1161 88 0 0 chr1 112251239 112251387 -84944045 + B1_Mus1 SINE Alu 1 148 0 3 1441 208 111 0 43 chr1 112251387 112251434 -84943998 + A-rich Low_complexity Low_complexity 1 45 0 3 1441 298 372 8 0 chr1 112251510 112251631 -84943801 + Lx8 LINE L1 7129 7250 -223 3 1441 22 35 0 0 chr1 112251803 112251832 -84943600 + AT_rich Low_complexity Low_complexity 1 29 0 3 1441 369 0 0 0 chr1 112251895 112251936 -84943496 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1441 381 58 0 0 chr1 112251945 112251997 -84943435 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1441 520 375 53 60 chr1 112252248 112252529 -84942903 + B4A SINE B4 13 291 -1 3 1441 213 231 0 0 chr1 112252531 112252570 -84942862 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 3 1441 26 30 0 0 chr1 112253014 112253047 -84942385 + AT_rich Low_complexity Low_complexity 1 33 0 3 1441 354 239 70 6 chr1 112253263 112253419 -84942013 - Lx9 LINE L1 -2 7642 7477 3 1441 225 108 0 0 chr1 112253493 112253530 -84941902 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1441 246 338 6 79 chr1 112253544 112253680 -84941752 + RMER15 LTR ERVL 315 444 -131 3 1441 902 244 208 16 chr1 112253680 112253988 -84941444 + ORR1B2 LTR MaLR 1 367 0 3 1441 246 338 6 79 chr1 112253988 112254015 -84941417 + RMER15 LTR ERVL 445 466 -109 3 1441 249 147 9 44 chr1 112254899 112255013 -84940419 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 3 1441 1038 89 7 14 chr1 112256368 112256516 -84938916 + B1_Mus2 SINE Alu 1 147 0 3 1441 498 108 0 0 chr1 112256538 112256612 -84938820 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 3 1441 6443 143 21 20 chr1 112256619 112257360 -84938072 + Lx LINE L1 5439 6184 -470 3 1441 1941 77 123 0 chr1 112257360 112257645 -84937787 - RLTR46 LTR ERVK 0 320 1 3 1441 6443 140 20 24 chr1 112257645 112258112 -84937320 + Lx LINE L1 6185 6653 -1 3 1441 231 347 61 27 chr1 112258210 112258358 -84937074 - MLT1B LTR MaLR 0 390 238 3 1441 1277 111 17 0 chr1 112259042 112259223 -84936209 + B2_Mm2 SINE B2 1 184 -11 3 1441 445 327 46 8 chr1 112259266 112259528 -84935904 + Lx9 LINE L1 7247 7518 -126 3 1441 21 36 0 0 chr1 112259994 112260022 -84935410 + AT_rich Low_complexity Low_complexity 1 28 0 3 1441 216 158 0 0 chr1 112260365 112260403 -84935029 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1441 1886 211 28 1 chr1 112261112 112261824 -84933608 + L1VL4 LINE L1 510 1241 -2318 3 1441 1367 145 42 17 chr1 112262752 112262990 -84932442 - Lx2 LINE L1 -1 6996 6753 3 1441 22 0 0 0 chr1 112263615 112263637 -84931795 + AT_rich Low_complexity Low_complexity 1 22 0 3 1441 22 56 0 0 chr1 112263944 112263980 -84931452 + AT_rich Low_complexity Low_complexity 1 36 0 3 1441 410 143 16 0 chr1 112263990 112264053 -84931379 + B2_Mm2 SINE B2 2 65 -130 3 1441 1065 110 0 0 chr1 112264066 112264212 -84931220 + B1_Mus2 SINE Alu 2 147 0 3 1441 1298 219 14 43 chr1 112264250 112264531 -84930901 - ORR1B2 LTR MaLR -94 273 1 3 1441 1247 100 0 107 chr1 112264567 112264791 -84930641 + Lx3B LINE L1 5782 5981 -992 3 1441 303 308 114 29 chr1 112265750 112266031 -84929401 - MTD LTR MaLR -14 405 66 3 1441 235 346 85 107 chr1 112266473 112266745 -84928687 - B4A SINE B4 -23 269 4 3 1441 489 62 0 0 chr1 112266761 112266826 -84928606 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1441 401 38 0 0 chr1 112266843 112266896 -84928536 + L1_Mus1 LINE L1 6513 6565 -2 3 1441 565 219 266 0 chr1 112266896 112267065 -84928367 - B3 SINE B2 -1 215 2 3 1441 216 324 0 13 chr1 112267612 112267687 -84927745 - B1_Mur1 SINE Alu -26 123 50 3 1441 528 237 39 13 chr1 112267939 112267953 -84927479 - Lx9 LINE L1 -153 7491 7479 3 1441 309 51 0 0 chr1 112267953 112267992 -84927440 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1441 528 237 39 13 chr1 112267992 112268131 -84927301 - Lx9 LINE L1 -166 7478 7334 3 1441 427 375 40 62 chr1 112268149 112268422 -84927010 + B4 SINE B4 18 284 -8 3 1441 228 200 0 0 chr1 112268432 112268482 -84926950 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1441 26 74 0 0 chr1 112268536 112268590 -84926842 + AT_rich Low_complexity Low_complexity 1 54 0 3 1441 21 36 0 0 chr1 112269407 112269435 -84925997 + AT_rich Low_complexity Low_complexity 1 28 0 3 1441 343 262 54 54 chr1 112270454 112270603 -84924829 + MER67D LTR ERV1 3 151 -363 3 1441 225 0 0 0 chr1 112270771 112270796 -84924636 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1441 387 0 0 0 chr1 112270796 112270838 -84924594 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1441 21 36 0 0 chr1 112270943 112270971 -84924461 + AT_rich Low_complexity Low_complexity 1 28 0 3 1441 917 150 0 33 chr1 112271003 112271155 -84924277 + B1_Mus1 SINE Alu 2 148 0 3 1441 614 77 0 11 chr1 112271164 112271203 -84924229 + (GAA)n Simple_repeat Simple_repeat 3 41 0 3 1441 1434 45 0 0 chr1 112271203 112271381 -84924051 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1441 614 77 0 11 chr1 112271381 112271433 -84923999 + (GAA)n Simple_repeat Simple_repeat 3 53 0 3 1441 31 0 0 0 chr1 112271787 112271818 -84923614 + AT_rich Low_complexity Low_complexity 1 31 0 3 1441 8135 73 2 4 chr1 112272475 112273520 -84921912 - MERVL-int LTR ERVL -736 4749 3707 3 1441 589 265 16 96 chr1 112273526 112273714 -84921718 - RMER13B LTR ERVK -735 173 1 3 1441 12082 130 18 16 chr1 112273715 112275841 -84919591 - MusHAL1 LINE L1 -527 2185 54 3 1441 24 0 0 0 chr1 112275926 112275950 -84919482 + AT_rich Low_complexity Low_complexity 1 24 0 3 1441 304 288 94 70 chr1 112275976 112276263 -84919169 - L1MD LINE L1 -2276 5719 5426 3 1441 555 353 68 5 chr1 112276405 112276627 -84918805 - B4 SINE B4 -47 245 10 3 1441 336 83 0 0 chr1 112277141 112277189 -84918243 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1441 204 40 0 0 chr1 112277879 112277904 -84917528 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3 1441 596 146 0 54 chr1 112278667 112278797 -84916635 - Lx LINE L1 -8 6646 6524 3 1441 1746 93 6 154 chr1 112278797 112279014 -84916418 + L1_Mus4 LINE L1 5624 5840 -796 3 1441 1099 102 0 0 chr1 112279014 112279161 -84916271 + B1_Mus2 SINE Alu 1 147 0 3 1441 1746 93 6 154 chr1 112279161 112279287 -84916145 + L1_Mus4 LINE L1 5841 5916 -720 3 1441 811 315 44 14 chr1 112279371 112279667 -84915765 + MTD LTR MaLR 115 419 0 3 1441 22 0 0 0 chr1 112279930 112279952 -84915480 + AT_rich Low_complexity Low_complexity 1 22 0 3 1441 484 296 34 56 chr1 112280628 112280807 -84914625 - B3 SINE B2 -17 199 25 3 1441 399 221 0 0 chr1 112281246 112281323 -84914109 - Lx5 LINE L1 -130 6920 6844 3 1441 4469 165 20 33 chr1 112281325 112282527 -84912905 - Lx LINE L1 -893 6104 4906 3 1441 219 313 29 123 chr1 112282849 112283020 -84912412 + RSINE1 SINE B4 11 165 0 3 1441 189 74 0 0 chr1 112283188 112283215 -84912217 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1441 528 215 72 29 chr1 112283685 112283824 -84911608 + B1_Mur4 SINE Alu 5 149 -1 3 1441 261 109 0 0 chr1 112283857 112283903 -84911529 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1441 28 48 0 0 chr1 112283955 112283997 -84911435 + AT_rich Low_complexity Low_complexity 1 42 0 3 1441 319 352 23 53 chr1 112284449 112284534 -84910898 + RSINE1 SINE B4 4 88 -77 3 1441 6301 59 30 19 chr1 112284534 112285380 -84910052 - RLTR13A LTR ERVK 0 855 1 3 1441 319 352 23 53 chr1 112285380 112285426 -84910006 + RSINE1 SINE B4 89 131 -34 3 1441 273 98 0 0 chr1 112285429 112285470 -84909962 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1441 189 0 0 0 chr1 112285470 112285490 -84909942 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1441 204 40 0 0 chr1 112285491 112285516 -84909916 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1441 257 353 56 28 chr1 112286653 112286831 -84908601 - RMER15 LTR ERVL -91 484 302 3 1441 246 264 33 33 chr1 112287248 112287338 -84908094 + Lx9 LINE L1 7380 7469 -175 3 1441 206 227 0 51 chr1 112287590 112287669 -84907763 + A-rich Low_complexity Low_complexity 1 75 0 3 1441 328 338 23 23 chr1 112288971 112289104 -84906328 + Lx8 LINE L1 7185 7317 -156 3 1441 29 0 0 0 chr1 112289229 112289258 -84906174 + AT_rich Low_complexity Low_complexity 1 29 0 3 1441 691 117 199 13 chr1 112290623 112290779 -84904653 - Lx3_Mus LINE L1 -869 6140 5956 3 1441 3375 126 8 6 chr1 112290780 112291314 -84904118 + Lx3A LINE L1 6438 6972 -9 3 1441 30 59 0 0 chr1 112292933 112292984 -84902448 + AT_rich Low_complexity Low_complexity 1 51 0 3 1441 3693 40 2 5 chr1 112293381 112293830 -84901602 + L1Md_F2 LINE L1 6123 6570 -12 3 1441 417 20 0 0 chr1 112293956 112294006 -84901426 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1441 390 129 0 0 chr1 112294161 112294223 -84901209 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1441 713 332 14 28 chr1 112294295 112294577 -84900855 - B4 SINE B4 -13 279 2 3 1441 3517 124 61 17 chr1 112294940 112295516 -84899916 + MT2B LTR ERVL 1 601 0 3 1441 1892 266 95 37 chr1 112296481 112297365 -84898067 - L1_Rod LINE L1 -66 5814 4998 3 1441 4330 148 23 4 chr1 112297365 112298099 -84897333 - Lx3A LINE L1 -3 6978 6231 4 1441 1758 317 66 81 chr1 112298099 112299118 -84896314 - L1_Rod LINE L1 -883 4997 3959 3 1441 430 368 33 11 chr1 112299475 112299747 -84895685 + Lx9 LINE L1 6894 7171 -473 4 1441 6930 120 14 4 chr1 112299814 112301059 -84894373 - L1_Mus4 LINE L1 -6 6630 5375 4 1441 3331 169 30 2 chr1 112301057 112301937 -84893495 + Lx2 LINE L1 5239 6154 -843 4 1441 1152 159 115 8 chr1 112301951 112302186 -84893246 + Lx2 LINE L1 6720 6979 -18 4 1441 4245 189 15 31 chr1 112302203 112303064 -84892368 + Lx2 LINE L1 6148 6994 -3 4 1441 592 256 92 5 chr1 112303102 112303287 -84892145 - Lx9 LINE L1 -418 7226 7026 4 1441 605 244 89 0 chr1 112303346 112303571 -84891861 + Lx9 LINE L1 7324 7568 -76 4 1441 265 130 19 0 chr1 112303760 112303814 -84891618 + Lx9 LINE L1 7583 7637 -7 4 1441 4656 124 11 4 chr1 112303965 112305224 -84890208 + MusHAL1 LINE L1 1 1259 -2094 4 1441 915 113 0 0 chr1 112305222 112305355 -84890077 + MusHAL1 LINE L1 1616 1748 -1605 4 1441 22 35 0 0 chr1 112305382 112305411 -84890021 + AT_rich Low_complexity Low_complexity 1 29 0 4 1441 1509 259 18 15 chr1 112306919 112307260 -84888172 + MTC LTR MaLR 10 351 -70 4 1441 236 362 31 80 chr1 112308044 112308206 -84887226 - RSINE1 SINE B4 0 165 12 4 1441 1098 65 0 0 chr1 112309571 112309710 -84885722 + B1_Mus1 SINE Alu 1 139 -9 4 1441 368 20 59 0 chr1 112309710 112309761 -84885671 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1441 2352 128 38 15 chr1 112310015 112310411 -84885021 + MTB_Mm LTR MaLR 1 405 -2 4 1441 1812 216 40 144 chr1 112312239 112313147 -84882285 + L1VL4 LINE L1 253 1045 -5290 4 1441 8443 94 22 4 chr1 112313151 112313991 -84881441 + Lx3_Mus LINE L1 5053 5917 -1092 4 1441 597 28 0 0 chr1 112313991 112314062 -84881370 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 4 1441 8443 132 30 26 chr1 112314062 112315162 -84880270 + Lx3_Mus LINE L1 5918 7008 -1 4 1441 9525 156 10 8 chr1 112315173 112316964 -84878468 + MusHAL1 LINE L1 134 1928 -784 4 1441 3071 179 32 49 chr1 112316972 112317403 -84878029 + RMER17B LTR ERVK 5 431 -527 4 1441 564 15 0 0 chr1 112317403 112317468 -84877964 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1441 3071 179 32 49 chr1 112317468 112317695 -84877737 + RMER17B LTR ERVK 432 652 -306 4 1441 4421 204 18 57 chr1 112317695 112317839 -84877593 + L1_Mur2 LINE L1 4482 4625 -1252 4 1441 198 103 0 0 chr1 112317839 112317868 -84877564 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1441 4421 204 18 57 chr1 112317868 112318809 -84876623 + L1_Mur2 LINE L1 4626 5523 -354 4 1441 4098 171 4 28 chr1 112318809 112319553 -84875879 + Lx2A1 LINE L1 6277 7002 -6 4 1441 349 371 25 20 chr1 112319725 112319926 -84875506 - Lx8 LINE L1 -221 7252 7051 4 1441 2124 123 9 3 chr1 112319932 112320257 -84875175 - ORR1A2 LTR MaLR 0 327 1 4 1441 8621 168 68 19 chr1 112320257 112322007 -84873425 - ORR1A2-int LTR MaLR 0 1963 128 4 1441 370 167 27 14 chr1 112322019 112322092 -84873340 - RLTR20A LTR ERVK -467 74 1 4 1441 288 309 0 0 chr1 112322126 112322207 -84873225 + RMER15-int LTR ERVL 4563 4643 -356 4 1441 1287 231 91 14 chr1 112322295 112322647 -84872785 + RLTR20A LTR ERVK 58 436 -105 4 1441 13828 86 7 2 chr1 112322647 112324573 -84870859 + L1Md_F2 LINE L1 3774 5709 -174 4 1441 1543 67 0 0 chr1 112324571 112324765 -84870667 + L1Md_F2 LINE L1 5997 6190 -392 4 1441 6901 55 1 0 chr1 112324775 112325636 -84869796 + L1Md_F2 LINE L1 5721 6582 0 4 1441 6757 132 20 0 chr1 112325782 112326839 -84868593 + L1Md_F2 LINE L1 128 1205 -5411 4 180 32132 77 3 1 chr1 112326807 112331276 -84864156 + L1Md_F2 LINE L1 1108 5586 -297 4 1442 8077 45 5 0 chr1 112331276 112332267 -84863165 + L1Md_F2 LINE L1 5587 6582 0 4 1442 62 0 0 0 chr1 112332267 112332329 -84863103 + AT_rich Low_complexity Low_complexity 1 62 0 4 1442 263 309 73 49 chr1 112332343 112332440 -84862992 - Lx8 LINE L1 -1181 6292 6191 4 1442 981 124 0 0 chr1 112332440 112332659 -84862773 + (CA)n Simple_repeat Simple_repeat 1 219 0 4 1442 263 309 73 49 chr1 112332659 112332763 -84862669 - Lx8 LINE L1 -1283 6190 6084 4 1442 233 146 0 20 chr1 112333418 112333467 -84861965 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1442 1334 319 56 59 chr1 112333680 112333838 -84861594 - Lx9 LINE L1 -485 7159 7021 4 1442 275 45 0 43 chr1 112333838 112333884 -84861548 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 1442 1334 319 56 59 chr1 112333884 112334441 -84860991 - Lx9 LINE L1 -624 7020 6446 4 1442 234 0 0 0 chr1 112334600 112334626 -84860806 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1442 1627 172 18 62 chr1 112334816 112335156 -84860276 + ORR1A2 LTR MaLR 3 327 0 4 1442 439 309 17 57 chr1 112335235 112335524 -84859908 - Lx8 LINE L1 -411 5768 5489 4 1442 407 373 39 42 chr1 112336178 112336508 -84858924 + Lx8 LINE L1 6955 7283 -190 4 1442 365 358 40 62 chr1 112336764 112336940 -84858492 + B4A SINE B4 5 176 -116 4 1442 432 0 0 0 chr1 112337668 112337716 -84857716 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1442 245 244 12 25 chr1 112338419 112338499 -84856933 + GA-rich Low_complexity Low_complexity 4 82 0 4 1442 831 78 0 0 chr1 112340952 112341068 -84854364 + (TTCC)n Simple_repeat Simple_repeat 2 117 0 4 1442 502 339 13 13 chr1 112341233 112341463 -84853969 - Lx7 LINE L1 -470 7226 6997 4 1442 958 225 64 17 chr1 112342240 112342538 -84852894 - Lx9 LINE L1 -95 7549 7238 4 1442 33 25 0 0 chr1 112342599 112342639 -84852793 + AT_rich Low_complexity Low_complexity 1 40 0 4 1442 525 341 63 56 chr1 112342984 112343270 -84852162 - B4A SINE B4 -4 288 1 4 1442 189 0 0 0 chr1 112343994 112344015 -84851417 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 4 1442 480 261 110 12 chr1 112345379 112345542 -84849890 + L1_Mur3 LINE L1 4215 4393 -1487 4 1442 356 0 0 22 chr1 112345542 112345587 -84849845 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 4 1442 383 229 38 0 chr1 112345589 112345694 -84849738 + L1_Mur3 LINE L1 4618 4726 -1154 4 1442 823 101 5 2 chr1 112345694 112345830 -84849602 + B1_Mus1 SINE Alu 1 139 -11 4 1442 1079 278 42 31 chr1 112345830 112346213 -84849219 + Lx7 LINE L1 6252 6638 -1058 4 1442 782 268 77 84 chr1 112346635 112346843 -84848589 - RMER20B LTR ERVK -88 539 343 4 1442 234 62 0 0 chr1 112346843 112346875 -84848557 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1442 782 242 218 37 chr1 112346875 112347148 -84848284 - RMER20B LTR ERVK -285 342 11 4 1442 393 270 8 80 chr1 112347539 112347664 -84847768 - RMER17A-int LTR ERVK -342 1386 1271 4 1442 786 295 80 25 chr1 112348290 112348463 -84846969 + Lx7 LINE L1 5973 6169 -1527 4 1442 315 0 0 0 chr1 112348463 112348498 -84846934 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 4 1442 786 295 80 25 chr1 112348498 112348724 -84846708 + Lx7 LINE L1 6170 6393 -1303 4 1442 997 356 37 21 chr1 112348705 112349278 -84846154 + Lx8 LINE L1 6675 7256 -217 4 1442 354 237 0 0 chr1 112349860 112349936 -84845496 + URR1A DNA MER1_type 61 136 -90 4 1442 1644 204 43 76 chr1 112349940 112350386 -84845046 - RLTR11B LTR ERVK -10 443 13 4 1442 437 221 0 37 chr1 112350350 112350458 -84844974 + URR1A DNA MER1_type 112 215 -11 4 1442 435 250 104 55 chr1 112351177 112351488 -84843944 - Lx7 LINE L1 0 7696 7382 4 1442 608 143 9 0 chr1 112351488 112351600 -84843832 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1442 1306 188 0 56 chr1 112351607 112351894 -84843538 + Lx LINE L1 6381 6651 -3 4 1442 186 189 0 0 chr1 112351929 112351966 -84843466 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 4 1442 785 271 22 62 chr1 112351966 112352289 -84843143 + L1_Mur3 LINE L1 3376 3685 -2195 4 1442 737 305 14 41 chr1 112352296 112352590 -84842842 + Lx7 LINE L1 6987 7272 -424 4 1442 4914 119 95 18 chr1 112352634 112353234 -84842198 - L1_Mus4 LINE L1 -6 6630 5972 4 1442 1188 134 32 0 chr1 112353234 112353420 -84842012 - B2_Mm1t SINE B2 -1 192 1 4 1442 4914 119 95 18 chr1 112353420 112353434 -84841998 - L1_Mus4 LINE L1 -665 5971 5959 4 1442 7118 88 22 4 chr1 112353434 112354435 -84840997 - RLTR13D5 LTR ERVK -4 1019 1 4 1442 4914 119 95 18 chr1 112354435 112354673 -84840759 - L1_Mus4 LINE L1 -678 5958 5713 4 1442 1139 127 5 21 chr1 112354667 112354860 -84840572 - Lx LINE L1 -819 5835 5646 4 1442 7159 176 35 12 chr1 112354848 112355301 -84840131 - L1_Mur2 LINE L1 -803 5074 4623 4 1442 396 0 0 0 chr1 112355301 112355345 -84840087 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 1442 7159 176 35 12 chr1 112355345 112356339 -84839093 - L1_Mur2 LINE L1 -1255 4622 3595 4 1442 290 267 83 13 chr1 112356382 112356610 -84838822 - L1_Mur2 LINE L1 -2576 3304 3061 4 1442 271 236 56 0 chr1 112356615 112356687 -84838745 - L1_Mur2 LINE L1 -3110 2770 2695 4 1442 343 252 21 176 chr1 112356726 112357015 -84838417 - L1_Mur2 LINE L1 -3295 2585 2342 4 1442 8493 168 33 21 chr1 112357038 112359013 -84836419 - Lx3A LINE L1 -3 6978 5256 4 1442 1192 114 11 0 chr1 112359016 112359191 -84836241 + B2_Mm1t SINE B2 1 177 -16 4 1442 375 135 9 5 chr1 112359206 112359270 -84836162 + B2_Mm2 SINE B2 47 114 -102 4 1442 180 0 0 0 chr1 112359286 112359306 -84836126 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1442 312 291 59 27 chr1 112359379 112359566 -84835866 - RMER17C LTR ERVK -150 260 68 4 1442 723 247 76 18 chr1 112359567 112359592 -84835840 - Lx3A LINE L1 -4241 1639 1615 4 1442 185 0 40 0 chr1 112359592 112359617 -84835815 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1442 1190 262 80 14 chr1 112359617 112360269 -84835163 - Lx3A LINE L1 -4266 1614 905 4 1442 181 0 0 65 chr1 112360269 112360300 -84835132 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1442 1190 280 85 8 chr1 112360300 112360405 -84835027 - Lx3A LINE L1 -6824 904 799 4 1442 389 339 63 6 chr1 112360413 112360588 -84834844 - Lx3A LINE L1 -7049 679 495 4 1442 24 32 0 0 chr1 112360711 112360742 -84834690 + AT_rich Low_complexity Low_complexity 1 31 0 4 1442 465 299 17 6 chr1 112362191 112362355 -84833077 + Lx6 LINE L1 6972 7115 -345 4 1442 761 285 45 45 chr1 112362465 112362755 -84832677 + Lx6 LINE L1 7145 7434 -26 4 1442 629 210 22 0 chr1 112362834 112362972 -84832460 - URR1A DNA MER1_type -27 199 59 4 1442 233 287 133 51 chr1 112362850 112363008 -84832424 + CYRA11_Mm Unknown Y-chromosome 218 388 -229 4 1442 532 133 23 0 chr1 112363496 112363624 -84831808 + (TATG)n Simple_repeat Simple_repeat 2 132 0 4 1442 23 0 0 0 chr1 112363830 112363853 -84831579 + AT_rich Low_complexity Low_complexity 1 23 0 4 1442 34 42 0 0 chr1 112363984 112364032 -84831400 + AT_rich Low_complexity Low_complexity 1 48 0 4 1442 262 278 214 10 chr1 112364750 112364946 -84830486 - Lx8 LINE L1 -10 7463 7228 4 1442 30 45 0 0 chr1 112365075 112365119 -84830313 + AT_rich Low_complexity Low_complexity 1 44 0 4 1442 228 354 46 96 chr1 112365280 112365499 -84829933 + ORR1E LTR MaLR 43 250 -109 4 1442 1458 199 118 16 chr1 112366160 112366481 -84828951 + ORR1B1 LTR MaLR 41 394 0 4 1442 6658 211 48 64 chr1 112366480 112368160 -84827272 + ORR1B1-int LTR MaLR 3 1655 -308 4 1442 300 181 24 12 chr1 112368160 112368244 -84827188 + (CCCTAA)n Simple_repeat Simple_repeat 1 85 0 4 1442 995 163 29 13 chr1 112368296 112368524 -84826908 - ORR1A3-int LTR MaLR -16 1947 1751 4 1442 3578 199 184 17 chr1 112368524 112368961 -84826471 + L1_Mur1 LINE L1 72 658 -6329 4 1442 2540 137 12 5 chr1 112368961 112369380 -84826052 + BGLII_Mus LTR ERVK 1 422 0 4 1442 3578 199 183 17 chr1 112369380 112369882 -84825550 + L1_Mur1 LINE L1 659 1164 -5823 4 1442 1083 102 0 0 chr1 112369882 112370029 -84825403 + B1_Mus2 SINE Alu 1 147 0 4 1442 468 313 40 10 chr1 112370029 112370063 -84825369 + L1_Mur1 LINE L1 1058 1097 -5425 4 1442 1368 44 0 0 chr1 112370066 112370246 -84825186 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1442 819 144 0 0 chr1 112370252 112370391 -84825041 + (GGAGAA)n Simple_repeat Simple_repeat 1 139 0 4 1442 3956 129 10 4 chr1 112370391 112371136 -84824296 + L1_Mur1 LINE L1 1136 1885 -4004 4 1442 24 77 0 0 chr1 112371226 112371278 -84824154 + AT_rich Low_complexity Low_complexity 1 52 0 4 1442 2106 240 45 26 chr1 112374530 112375113 -84820319 - Lx6 LINE L1 -1313 6147 5586 4 1442 560 268 21 14 chr1 112375116 112375260 -84820172 - RMER20B LTR ERVK 0 627 483 4 1442 462 36 0 0 chr1 112376798 112376854 -84818578 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1442 520 354 21 49 chr1 112376895 112377180 -84818252 - B4A SINE B4 -10 282 6 4 1442 276 30 0 0 chr1 112377705 112377738 -84817694 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1442 1433 238 80 23 chr1 112377909 112378296 -84817136 + MTD LTR MaLR 11 419 0 5 1442 809 220 6 28 chr1 112378452 112378630 -84816802 + URR1A DNA MER1_type 50 223 -3 5 1442 231 255 0 19 chr1 112379261 112379313 -84816119 + B1_Mm SINE Alu 6 56 -91 5 1442 633 185 9 0 chr1 112379311 112379419 -84816013 + B1_Mus1 SINE Alu 35 143 -5 5 1442 498 287 81 15 chr1 112380101 112380330 -84815102 + ERVL-E-int LTR ERVL 3880 4156 -1329 5 1442 416 51 17 0 chr1 112381172 112381231 -84814201 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1442 315 0 0 0 chr1 112381473 112381508 -84813924 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1442 320 148 0 16 chr1 112381978 112382040 -84813392 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1442 259 171 45 62 chr1 112382047 112382159 -84813273 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 5 1442 21 71 0 0 chr1 112383151 112383193 -84812239 + AT_rich Low_complexity Low_complexity 1 42 0 5 1442 181 214 48 0 chr1 112383535 112383577 -84811855 + L4 LINE RTE 1002 1045 -984 5 1442 465 19 0 0 chr1 112384080 112384134 -84811298 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1442 21 36 0 0 chr1 112384981 112385009 -84810423 + AT_rich Low_complexity Low_complexity 1 28 0 5 1442 627 296 183 10 chr1 112385277 112385577 -84809855 + Lx9 LINE L1 7286 7637 -7 5 1442 34 65 0 0 chr1 112385578 112385640 -84809792 + AT_rich Low_complexity Low_complexity 1 62 0 5 1442 204 184 41 0 chr1 112385640 112385689 -84809743 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 5 1442 21 0 0 0 chr1 112386576 112386597 -84808835 + AT_rich Low_complexity Low_complexity 1 21 0 5 1442 1790 106 34 28 chr1 112386652 112386972 -84808460 - RLTRETN_Mm LTR ERVK 0 322 1 5 1442 21 71 0 0 chr1 112387053 112387095 -84808337 + AT_rich Low_complexity Low_complexity 1 42 0 5 1442 296 290 18 0 chr1 112387343 112387427 -84808005 + PB1D10 SINE Alu 12 99 -21 5 1442 5994 96 17 7 chr1 112387430 112388308 -84807124 - L1_Mus3 LINE L1 -5 6633 5747 5 1442 256 328 73 8 chr1 112388831 112388954 -84806478 + B1F1 SINE Alu 18 148 -1 5 1442 30 27 0 0 chr1 112389876 112389913 -84805519 + AT_rich Low_complexity Low_complexity 1 37 0 5 1442 22 56 0 0 chr1 112389968 112390004 -84805428 + AT_rich Low_complexity Low_complexity 1 36 0 5 1442 21 0 0 0 chr1 112390289 112390310 -84805122 + AT_rich Low_complexity Low_complexity 1 21 0 5 1442 343 105 0 0 chr1 112390626 112390683 -84804749 - L1_Mus2 LINE L1 0 6566 6510 5 1442 5642 97 7 1 chr1 112390686 112391590 -84803842 - L1_Mus2 LINE L1 -628 5938 5028 5 1442 4696 133 14 15 chr1 112391588 112392396 -84803036 - L1_Mus2 LINE L1 -2061 3822 3016 5 1442 2983 170 17 4 chr1 112392396 112392928 -84802504 + Lx4A LINE L1 6520 7058 0 5 1442 24 85 0 0 chr1 112393526 112393585 -84801847 + AT_rich Low_complexity Low_complexity 1 59 0 5 1442 22 0 0 0 chr1 112393634 112393656 -84801776 + AT_rich Low_complexity Low_complexity 1 22 0 5 1442 1266 185 123 0 chr1 112393996 112394292 -84801140 - Lx6 LINE L1 -1553 5907 5547 5 1442 659 317 80 63 chr1 112394299 112394851 -84800581 - Lx9 LINE L1 -500 7144 6584 5 1442 1512 272 14 51 chr1 112394848 112395069 -84800363 - L1_Rod LINE L1 -209 5638 5418 5 1442 222 62 0 0 chr1 112395069 112395101 -84800331 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1442 1512 272 14 51 chr1 112395101 112395287 -84800145 - L1_Rod LINE L1 -430 5417 5243 5 1442 471 18 0 0 chr1 112395287 112395343 -84800089 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1442 1512 272 14 51 chr1 112395343 112395562 -84799870 - L1_Rod LINE L1 -605 5242 5035 5 1442 310 320 17 22 chr1 112395675 112395905 -84799527 - L1_Rod LINE L1 -2508 3339 3111 5 1442 1916 178 50 25 chr1 112396042 112396439 -84798993 - Lx2 LINE L1 -1 6996 6590 5 1442 1888 115 28 22 chr1 112396457 112396777 -84798655 - RLTRETN_Mm LTR ERVK 0 322 1 5 1442 24 77 0 0 chr1 112396786 112396838 -84798594 + AT_rich Low_complexity Low_complexity 1 52 0 5 1442 3392 158 15 5 chr1 112397686 112398271 -84797161 - Lx2A1 LINE L1 -3 7005 6415 5 1442 628 339 54 64 chr1 112398461 112398849 -84796583 + MTB LTR MaLR 5 388 -12 5 1442 25 51 0 0 chr1 112399351 112399390 -84796042 + AT_rich Low_complexity Low_complexity 1 39 0 5 1442 355 410 6 0 chr1 112400259 112400432 -84795000 - MLT1A0 LTR MaLR -117 248 75 5 1442 387 0 0 0 chr1 112400761 112400804 -84794628 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1442 18227 181 103 17 chr1 112400913 112405972 -84789460 + L1_Mus2 LINE L1 409 5960 -606 5 1442 3006 108 77 17 chr1 112405972 112406452 -84788980 + L1_Mus2 LINE L1 6058 6566 0 5 1442 26 74 0 0 chr1 112406521 112406575 -84788857 + AT_rich Low_complexity Low_complexity 1 54 0 5 1442 38 68 0 0 chr1 112406902 112406975 -84788457 + AT_rich Low_complexity Low_complexity 1 73 0 5 1442 389 188 0 0 chr1 112407129 112407198 -84788234 + L1Md_F2 LINE L1 269 337 -6282 5 1442 31912 82 6 1 chr1 112407191 112412098 -84783334 + L1Md_F2 LINE L1 563 5588 -298 5 1442 7985 53 2 1 chr1 112412099 112413094 -84782338 + L1Md_F2 LINE L1 5590 6585 0 5 1442 377 320 79 25 chr1 112413256 112413624 -84781808 + L1MA4 LINE L1 5606 5993 -307 5 1442 2217 103 38 3 chr1 112414334 112414673 -84780759 - Lx3_Mus LINE L1 -8 7001 6651 5 1442 886 174 13 0 chr1 112414673 112414822 -84780610 + B2_Mm1t SINE B2 15 165 -28 5 1442 252 390 18 24 chr1 112414924 112415092 -84780340 + Lx8 LINE L1 7114 7280 -193 5 1442 23 0 0 0 chr1 112415124 112415147 -84780285 + AT_rich Low_complexity Low_complexity 1 23 0 5 1442 2700 87 10 35 chr1 112415476 112415880 -84779552 - MTA_Mm LTR MaLR -2 394 1 5 1442 27 49 0 0 chr1 112417397 112417438 -84777994 + AT_rich Low_complexity Low_complexity 1 41 0 5 1442 9861 104 16 7 chr1 112417809 112418233 -84777199 - L1_Mur1 LINE L1 -187 5699 5276 5 1442 321 26 0 0 chr1 112418233 112418271 -84777161 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1442 9861 104 16 7 chr1 112418271 112418892 -84776540 - L1_Mur1 LINE L1 -611 5275 4645 5 1442 591 15 0 0 chr1 112418892 112418960 -84776472 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 5 1442 9861 104 16 7 chr1 112418960 112419395 -84776037 - L1_Mur1 LINE L1 -1242 4644 4209 5 1442 423 0 0 0 chr1 112419447 112419494 -84775938 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1442 417 39 0 0 chr1 112419494 112419544 -84775888 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1442 207 0 0 0 chr1 112420594 112420617 -84774815 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1442 15056 84 5 5 chr1 112420765 112423532 -84771900 - L1Md_F2 LINE L1 -8 6574 3814 5 1442 5096 105 40 1 chr1 112423527 112424848 -84770584 - L1Md_F2 LINE L1 -3939 1944 570 5 1442 1251 85 17 0 chr1 112424896 112425073 -84770359 + L1_Mus1 LINE L1 6387 6566 -1 5 1442 503 324 63 22 chr1 112426486 112426814 -84768618 - RLTR6-int LTR ERV1 -117 7661 7134 5 1442 1049 316 76 30 chr1 112428250 112429002 -84766430 - RLTR6-int LTR ERV1 -2000 5606 4911 5 1442 7010 41 7 1 chr1 112429033 112429893 -84765539 - L1Md_F2 LINE L1 -2 6580 5716 5 1442 303 324 29 29 chr1 112430132 112430272 -84765160 + MURVY-int LTR ERV1 4149 4288 -3164 5 1442 1066 84 21 0 chr1 112430435 112430578 -84764854 + B1_Mus1 SINE Alu 1 146 -2 5 1442 212 0 0 35 chr1 112430580 112430609 -84764823 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1442 3126 242 84 21 chr1 112430609 112431606 -84763826 + Lx2B LINE L1 5937 6995 -5 5 1442 21 0 0 0 chr1 112431654 112431675 -84763757 + AT_rich Low_complexity Low_complexity 1 21 0 5 1442 1513 302 40 16 chr1 112431696 112432144 -84763288 - Lx5 LINE L1 -5 7045 6587 5 1442 24 32 0 0 chr1 112432195 112432226 -84763206 + AT_rich Low_complexity Low_complexity 1 31 0 5 1442 37 23 0 0 chr1 112432755 112432799 -84762633 + AT_rich Low_complexity Low_complexity 1 44 0 5 1442 908 114 17 28 chr1 112432979 112433160 -84762272 + GA-rich Low_complexity Low_complexity 2 180 0 5 1442 7510 69 12 8 chr1 112433712 112434931 -84760501 - L1Md_F2 LINE L1 -3 6579 5356 5 1442 26 0 0 0 chr1 112435172 112435198 -84760234 + AT_rich Low_complexity Low_complexity 1 26 0 5 1442 37211 46 0 4 chr1 112438437 112444641 -84750791 - L1Md_T LINE L1 -12 6573 299 5 1442 614 325 96 82 chr1 112445607 112445964 -84749468 + MTE2a LTR MaLR 49 405 -14 5 1442 430 305 116 77 chr1 112445966 112446293 -84749139 + MTE2a-int LTR MaLR 1 340 -918 5 1442 4273 157 26 46 chr1 112446432 112447363 -84748069 - L1_Mus4 LINE L1 -2 6998 5795 5 1442 4340 161 13 12 chr1 112447361 112448128 -84747304 + L1_Mus4 LINE L1 5027 5794 -89 5 1442 3104 188 67 37 chr1 112448426 112449154 -84746278 - RMER6A LTR ERVK -6 750 1 5 1442 438 53 0 0 chr1 112449262 112449319 -84746113 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1442 408 349 0 0 chr1 112449321 112449447 -84745985 - ORR1D-int LTR MaLR -549 821 696 5 1442 385 234 28 127 chr1 112449471 112449613 -84745819 + MTE2a-int LTR MaLR 457 584 -925 5 1442 668 286 53 19 chr1 112449591 112449858 -84745574 - ORR1B1-int LTR MaLR -528 981 562 5 1442 597 271 94 73 chr1 112449836 112450111 -84745321 - ORR1B1 LTR MaLR -12 382 102 5 1442 9749 206 151 40 chr1 112450114 112451966 -84743466 + L1VL4 LINE L1 664 2555 -3325 5 1442 1185 68 0 0 chr1 112451966 112452112 -84743320 - B1_Mus2 SINE Alu -1 146 1 5 1442 9749 227 203 40 chr1 112452112 112452705 -84742727 + L1VL4 LINE L1 2556 3651 -2229 5 1442 297 0 0 0 chr1 112452705 112452738 -84742694 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1442 9749 227 203 40 chr1 112452738 112454256 -84741176 + L1VL4 LINE L1 3652 5316 -564 5 1442 3243 100 2 0 chr1 112454256 112454706 -84740726 + L1_Mus1 LINE L1 6117 6567 0 5 1442 9749 227 203 40 chr1 112454706 112455169 -84740263 + L1VL4 LINE L1 5317 5757 -123 5 1442 5242 147 25 5 chr1 112455170 112456038 -84739394 + Lx2 LINE L1 6101 6986 -11 5 1442 519 154 18 212 chr1 112456123 112456200 -84739232 - ORR1B1-int LTR MaLR 0 1370 1305 5 1442 1036 77 28 7 chr1 112456200 112456344 -84739088 + B1_Mm SINE Alu 1 147 0 5 1442 519 154 18 212 chr1 112456344 112456359 -84739073 - ORR1D-int LTR MaLR -66 1304 1304 5 1442 405 0 0 0 chr1 112456359 112456404 -84739028 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 1442 519 154 18 212 chr1 112456404 112456475 -84738957 - ORR1B1-int LTR MaLR -66 1304 1238 5 1442 2388 141 17 28 chr1 112456475 112456646 -84738786 - L1_Mur2 LINE L1 -2009 3868 3707 5 1442 306 0 0 0 chr1 112456646 112456680 -84738752 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 1442 2388 141 17 28 chr1 112456680 112456930 -84738502 - L1_Mur2 LINE L1 -2171 3706 3452 5 1442 4258 150 11 8 chr1 112456930 112457664 -84737768 + Lx LINE L1 5914 6649 -5 5 1442 368 198 98 9 chr1 112457666 112457778 -84737654 - ORR1B2-int LTR MaLR -116 1393 1272 5 1442 2116 296 111 44 chr1 112457770 112458774 -84736658 - ORR1B2-int LTR MaLR -298 1072 2 5 1442 395 299 103 6 chr1 112458775 112458940 -84736492 - ORR1B2 LTR MaLR 0 367 199 5 1442 3078 206 131 3 chr1 112458977 112459640 -84735792 + RMER19B LTR ERVK 143 890 -12 5 180 2440 161 12 15 chr1 112459656 112460239 -84735193 - Lx5 LINE L1 -947 6061 5459 5 1443 369 0 0 0 chr1 112460730 112460771 -84734661 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1443 852 29 0 0 chr1 112460773 112460876 -84734556 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1443 968 292 132 81 chr1 112461539 112462098 -84733334 + RMER19A LTR ERVK 150 737 0 5 1443 207 0 0 0 chr1 112463013 112463036 -84732396 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1443 1655 236 70 5 chr1 112463241 112463629 -84731803 + MTC LTR MaLR 1 413 -8 6 1443 453 36 0 0 chr1 112464070 112464125 -84731307 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6 1443 9211 143 38 16 chr1 112464732 112468061 -84727371 + L1_Mus3 LINE L1 452 5288 -595 6 1443 5096 108 103 7 chr1 112468061 112468874 -84726558 + L1_Mus3 LINE L1 5741 6631 -7 6 1443 369 374 56 46 chr1 112468924 112469120 -84726312 - B3A SINE B2 0 198 1 6 1443 255 154 0 0 chr1 112470277 112470342 -84725090 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1443 309 115 19 0 chr1 112470342 112470394 -84725038 - HAL1-3A_ME LINE L1 -830 2028 1976 6 1443 183 114 0 0 chr1 112470394 112470429 -84725003 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 6 1443 295 384 14 7 chr1 112470429 112470568 -84724864 - RSINE1 SINE B4 0 165 26 6 1443 25 0 0 0 chr1 112470574 112470599 -84724833 + AT_rich Low_complexity Low_complexity 1 25 0 6 1443 846 139 8 0 chr1 112470698 112470827 -84724605 - Lx LINE L1 -338 6316 6187 6 1443 1594 152 54 35 chr1 112470827 112471141 -84724291 + Lx LINE L1 6335 6654 0 6 1443 351 213 77 118 chr1 112471271 112471339 -84724093 - Lx8 LINE L1 -185 7288 7217 6 1443 1441 232 11 63 chr1 112471339 112471720 -84723712 + ORR1B2 LTR MaLR 5 365 -2 6 1443 351 213 77 118 chr1 112471720 112471821 -84723611 - Lx8 LINE L1 -257 7216 7126 6 1443 1197 47 0 0 chr1 112471852 112472000 -84723432 - L1Md_T LINE L1 -495 6087 5940 6 1443 3839 79 0 0 chr1 112472000 112472506 -84722926 + L1Md_T LINE L1 6077 6582 0 6 1443 794 181 14 14 chr1 112472634 112472780 -84722652 + B1_Mur4 SINE Alu 5 150 0 6 1443 329 184 0 13 chr1 112472832 112472909 -84722523 + L1_Mur2 LINE L1 4795 4870 -1007 6 1443 439 173 0 0 chr1 112472913 112472988 -84722444 - Lx4A LINE L1 -693 6365 6291 6 1443 249 172 0 33 chr1 112472990 112473050 -84722382 + L1_Mur2 LINE L1 4891 4948 -929 6 1443 2736 186 8 0 chr1 112473021 112473515 -84721917 + Lx4A LINE L1 6349 6846 -212 6 1443 270 0 0 0 chr1 112473515 112473545 -84721887 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1443 409 146 48 10 chr1 112473724 112473828 -84721604 - Lx2B LINE L1 -13 6987 6880 6 1443 749 229 67 0 chr1 112473828 112474007 -84721425 + Lx4A LINE L1 6857 7047 -11 6 1443 32 0 0 0 chr1 112474127 112474159 -84721273 + AT_rich Low_complexity Low_complexity 1 32 0 6 1443 6079 156 29 12 chr1 112474293 112475824 -84719608 - Lx LINE L1 0 6654 5098 6 1443 3536 171 8 6 chr1 112475820 112476483 -84718949 + Lx LINE L1 4439 5102 -781 6 1443 743 384 45 28 chr1 112476506 112477264 -84718168 - Lx8 LINE L1 -572 6901 6131 6 1443 4368 199 31 17 chr1 112477306 112478201 -84717231 + RMER13B LTR ERVK 1 908 0 6 1443 25 0 0 0 chr1 112478539 112478564 -84716868 + AT_rich Low_complexity Low_complexity 1 25 0 6 1443 1734 186 47 30 chr1 112478583 112478948 -84716484 + Lx2B LINE L1 6630 7000 0 6 1443 21 71 0 0 chr1 112479969 112480011 -84715421 + AT_rich Low_complexity Low_complexity 1 42 0 6 1443 22 70 0 0 chr1 112480262 112480305 -84715127 + AT_rich Low_complexity Low_complexity 1 43 0 6 1443 537 310 32 0 chr1 112480353 112480511 -84714921 + Lx8 LINE L1 7127 7289 -184 6 1443 423 175 25 12 chr1 112480671 112480752 -84714680 - MTC LTR MaLR -337 84 3 6 1443 7015 162 13 2 chr1 112480924 112482161 -84713271 + L1_Mm LINE L1 4302 5552 -331 6 1443 8378 210 37 48 chr1 112482146 112482370 -84713062 + L1_Mur2 LINE L1 1857 2051 -3826 6 1443 252 0 0 0 chr1 112482370 112482398 -84713034 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1443 8378 210 37 48 chr1 112482398 112484553 -84710879 + L1_Mur2 LINE L1 2052 4210 -1667 6 1443 3304 274 30 6 chr1 112484551 112485553 -84709879 + Lx5 LINE L1 5737 6808 -242 6 1443 1297 259 79 85 chr1 112485598 112485927 -84709505 + L1_Rod LINE L1 4617 4985 -862 6 1443 308 64 0 21 chr1 112485927 112485975 -84709457 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1443 1297 259 79 85 chr1 112485975 112486401 -84709031 + L1_Rod LINE L1 4986 5367 -480 6 1443 226 170 0 60 chr1 112486420 112486470 -84708962 + L1M3 LINE L1 5389 5435 -745 6 1443 226 170 0 60 chr1 112486451 112486501 -84708931 + L1M3 LINE L1 5389 5435 -745 6 1443 226 170 0 60 chr1 112486544 112486594 -84708838 + L1M3 LINE L1 5389 5435 -745 6 1443 226 125 0 70 chr1 112486575 112486618 -84708814 + L1M3 LINE L1 5389 5428 -752 6 1443 1377 272 5 20 chr1 112486646 112487040 -84708392 + L1_Rod LINE L1 5335 5722 -125 6 1443 2480 196 151 57 chr1 112487040 112487847 -84707585 + RMER19B LTR ERVK 1 883 -19 6 1443 1508 190 34 3 chr1 112487850 112488145 -84707287 - L1_Mm LINE L1 -147 5736 5433 6 1443 817 251 63 0 chr1 112488135 112488326 -84707106 - Lx5 LINE L1 -438 6612 6410 6 1443 615 289 82 50 chr1 112488324 112488640 -84706792 - L1_Rod LINE L1 -2256 3591 3240 6 1443 381 102 0 0 chr1 112488640 112488699 -84706733 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 6 1443 615 289 82 50 chr1 112488699 112488968 -84706464 - L1_Rod LINE L1 -2608 3239 2987 6 1443 5800 94 6 25 chr1 112489051 112489888 -84705544 - L1_Mus2 LINE L1 0 6566 5746 6 1443 2524 148 85 81 chr1 112489933 112490224 -84705208 - RMER16 LTR ERVK 0 533 228 6 1443 2671 67 19 14 chr1 112490224 112490587 -84704845 - L1_Mus1 LINE L1 -2 6565 6201 6 1443 2524 148 85 81 chr1 112490587 112490826 -84704606 - RMER16 LTR ERVK -306 227 1 6 1443 784 263 55 39 chr1 112490828 112491192 -84704240 - L1_Rod LINE L1 -2940 2907 2538 6 1443 648 115 0 19 chr1 112491283 112491389 -84704043 - L1_Mus1 LINE L1 -62 6505 6402 6 1443 981 50 0 0 chr1 112491385 112491504 -84703928 + L1_Mus1 LINE L1 6197 6315 -252 6 1443 321 277 10 10 chr1 112491528 112491630 -84703802 - L1_Rod LINE L1 -3322 2525 2424 6 1443 1206 314 27 81 chr1 112491678 112492355 -84703077 + Lx9 LINE L1 6598 7237 -407 6 1443 2193 175 120 47 chr1 112492744 112492757 -84702675 - RMER16 LTR ERVK -6 527 519 6 1443 3331 75 11 0 chr1 112492757 112493199 -84702233 - LTRIS5 LTR ERV1 0 447 1 6 1443 2193 175 120 47 chr1 112493199 112493676 -84701756 - RMER16 LTR ERVK -15 518 1 6 1443 386 39 19 0 chr1 112493899 112493951 -84701481 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1443 2411 129 8 3 chr1 112494261 112494634 -84700798 + L1_Mus3 LINE L1 6262 6636 -2 6 1443 24 77 0 0 chr1 112495286 112495338 -84700094 + AT_rich Low_complexity Low_complexity 1 52 0 6 1443 24 0 0 0 chr1 112495635 112495659 -84699773 + AT_rich Low_complexity Low_complexity 1 24 0 6 1443 1053 303 85 59 chr1 112495979 112496568 -84698864 - RLTR40 LTR ERVK -213 604 1 6 1443 373 213 45 134 chr1 112500689 112500846 -84694586 + RLTR8 LTR ERVK 229 375 0 1 1443 302 131 33 0 chr1 112500943 112501004 -84694428 + GA-rich Low_complexity Low_complexity 2 64 0 2 1443 488 326 79 0 chr1 112501397 112501624 -84693808 - Lx9 LINE L1 -420 7224 6980 3 1443 452 247 19 52 chr1 112501623 112501777 -84693655 + Lx9 LINE L1 7295 7443 -201 4 1443 515 155 0 0 chr1 112503785 112503888 -84691544 - L1_Mur2 LINE L1 -999 4878 4776 5 1443 6953 205 109 28 chr1 112503888 112504795 -84690637 - L1_Mur2 LINE L1 -2246 3631 2650 5 1443 306 0 0 0 chr1 112504795 112504829 -84690603 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1443 209 33 33 0 chr1 112504829 112504858 -84690574 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1443 6953 205 109 28 chr1 112504858 112505399 -84690033 - L1_Mur2 LINE L1 -3228 2649 2087 5 1443 387 41 0 0 chr1 112505399 112505448 -84689984 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1443 468 0 0 0 chr1 112505448 112505499 -84689933 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1443 6953 205 109 28 chr1 112505499 112505990 -84689442 - L1_Mur2 LINE L1 -3791 2086 1511 5 1443 1214 46 23 0 chr1 112505990 112506164 -84689268 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 1443 6953 205 109 28 chr1 112506164 112506394 -84689038 - L1_Mur2 LINE L1 -4367 1510 1285 5 1443 23 33 0 0 chr1 112508759 112508789 -84686643 + AT_rich Low_complexity Low_complexity 1 30 0 1 1443 180 0 0 0 chr1 112509396 112509416 -84686016 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1443 24 85 0 0 chr1 112509456 112509515 -84685917 + AT_rich Low_complexity Low_complexity 1 59 0 1 1443 2532 109 74 37 chr1 112509571 112510029 -84685403 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1443 396 125 0 0 chr1 112510171 112510243 -84685189 - L1_Mus2 LINE L1 0 6566 6495 1 1443 570 29 0 0 chr1 112510625 112510693 -84684739 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1443 1043 75 0 0 chr1 112510695 112510828 -84684604 + B1_Mus1 SINE Alu 1 133 -15 1 1443 259 250 234 0 chr1 112511174 112511298 -84684134 - Lx8 LINE L1 -557 6916 6764 1 1443 1231 231 59 15 chr1 112511296 112511635 -84683797 - Lx5 LINE L1 -898 6152 5799 1 1443 21 36 0 0 chr1 112511673 112511701 -84683731 + AT_rich Low_complexity Low_complexity 1 28 0 2 1443 2410 142 17 15 chr1 112511819 112512225 -84683207 + Lx3A LINE L1 6574 6980 -1 2 1443 7972 196 58 16 chr1 112512372 112514282 -84681150 + L1_Mur2 LINE L1 2667 4657 -1220 2 1443 1674 256 7 25 chr1 112514282 112514731 -84680701 - Lx5 LINE L1 -38 5842 5402 1 1443 901 69 8 8 chr1 112514759 112514890 -84680542 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 2 1443 3569 178 47 15 chr1 112514890 112515570 -84679862 - Lx2 LINE L1 -1 6996 6295 2 1443 37340 48 1 3 chr1 112515683 112521523 -84673909 + L1Md_T LINE L1 243 6168 -417 2 1443 398 326 59 86 chr1 112521525 112521780 -84673652 + Lx6 LINE L1 7182 7429 -31 2 1443 861 26 26 0 chr1 112521780 112521896 -84673536 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 2 1443 353 279 130 27 chr1 112521916 112522100 -84673332 + B3 SINE B2 1 203 -13 2 1443 848 87 16 0 chr1 112522601 112522727 -84672705 + (GAAAA)n Simple_repeat Simple_repeat 2 129 0 2 1443 1043 241 37 196 chr1 112524136 112524447 -84670985 + ORR1B2 LTR MaLR 3 276 -91 3 1443 420 55 0 0 chr1 112524447 112524502 -84670930 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1443 1043 241 37 196 chr1 112524502 112524623 -84670809 + ORR1B2 LTR MaLR 277 366 -1 3 1443 12788 168 28 4 chr1 112524889 112527362 -84668070 - L1_Mur1 LINE L1 -773 5113 2582 3 1443 2184 191 160 0 chr1 112527372 112527879 -84667553 + L1_Mm LINE L1 5113 5700 -183 3 1443 291 189 0 0 chr1 112527876 112527929 -84667503 - L1_Mur2 LINE L1 -1934 3943 3891 3 1443 272 48 24 0 chr1 112527929 112527971 -84667461 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 3 1443 1258 173 88 46 chr1 112527999 112528283 -84667149 + Lx LINE L1 6359 6654 0 3 1443 272 255 194 39 chr1 112528362 112528517 -84666915 + ORR1D1 LTR MaLR 3 181 -193 3 1443 180 179 0 0 chr1 112528535 112528574 -84666858 + CT-rich Low_complexity Low_complexity 1 39 0 3 1443 412 218 11 11 chr1 112528587 112528675 -84666757 + ORR1D1 LTR MaLR 174 261 -113 3 1443 1059 116 0 0 chr1 112528817 112528964 -84666468 + B1_Mm SINE Alu 1 147 0 3 1443 1409 222 73 15 chr1 112530673 112531016 -84664416 - ORR1B2 LTR MaLR -2 365 3 4 1443 1200 226 82 38 chr1 112531427 112531744 -84663688 + ORR1B1 LTR MaLR 41 371 -23 4 1443 3290 274 53 12 chr1 112532059 112533688 -84661744 + Lx6 LINE L1 4823 6738 -722 4 1443 494 147 21 0 chr1 112533692 112533787 -84661645 + GA-rich Low_complexity Low_complexity 3 99 0 4 1443 261 0 0 0 chr1 112533796 112533825 -84661607 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 1443 369 301 26 48 chr1 112533869 112534082 -84661350 + Lx5 LINE L1 6507 6690 -360 4 1443 680 151 26 19 chr1 112534085 112534240 -84661192 + GA-rich Low_complexity Low_complexity 4 159 0 4 1443 347 268 36 12 chr1 112534284 112534367 -84661065 + Lx5 LINE L1 7086 7170 -290 4 1443 3399 178 40 11 chr1 112534648 112535380 -84660052 - L1_Mur2 LINE L1 -1476 4401 3649 4 1443 6482 124 66 18 chr1 112535461 112535804 -84659628 + RMER16-int LTR ERVK 2031 2402 -3004 4 1443 261 83 0 0 chr1 112535804 112535840 -84659592 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 4 1443 6482 124 66 18 chr1 112535840 112536605 -84658827 + RMER16-int LTR ERVK 2403 3191 -2215 4 1443 12246 149 29 11 chr1 112536623 112538111 -84657321 + RMER16-int LTR ERVK 3254 4770 -636 4 1443 5007 40 2 0 chr1 112538111 112538710 -84656722 + L1Md_F2 LINE L1 5969 6568 -14 5 1443 12246 149 29 11 chr1 112538710 112539333 -84656099 + RMER16-int LTR ERVK 4771 5404 -2 4 1443 512 134 6 31 chr1 112539344 112539453 -84655979 - B1_Mus2 SINE Alu -43 106 1 5 1443 463 74 0 14 chr1 112539455 112539524 -84655908 - B1_Mur4 SINE Alu 0 150 83 5 1443 562 196 9 0 chr1 112540141 112540253 -84655179 + RMER16 LTR ERVK 421 533 0 4 1443 1337 165 63 4 chr1 112540253 112540475 -84654957 - ORR1A2 LTR MaLR -91 236 1 5 1443 9248 176 58 16 chr1 112540480 112542357 -84653075 - ORR1A2-int LTR MaLR -7 1956 1 5 1443 1922 152 9 9 chr1 112542359 112542684 -84652748 - ORR1A2 LTR MaLR -2 325 1 5 1443 1969 178 5 5 chr1 112542691 112543059 -84652373 - Lx2B LINE L1 -389 5494 5127 5 1443 6406 195 29 16 chr1 112543047 112543816 -84651616 + Lx2B LINE L1 5535 6304 -696 5 1443 3276 43 2 2 chr1 112543816 112544212 -84651220 + MTA_Mm LTR MaLR 1 396 0 5 1443 6541 97 45 71 chr1 112544212 112545339 -84650093 + MTA_Mm-int LTR MaLR 1 1098 0 5 1443 3378 30 2 2 chr1 112545339 112545735 -84649697 + MTA_Mm LTR MaLR 1 396 0 5 1443 6406 195 30 16 chr1 112545735 112546303 -84649129 + Lx2B LINE L1 6305 6888 -112 5 1443 2606 114 8 2 chr1 112546308 112546705 -84648727 - RLTR22_Mur LTR ERVK -1275 573 175 5 1443 477 0 0 0 chr1 112546706 112546759 -84648673 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1443 2694 281 38 73 chr1 112546776 112547876 -84647556 + Lx2B LINE L1 5916 6977 -23 5 1443 492 18 0 0 chr1 112548427 112548484 -84646948 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1443 298 143 16 16 chr1 112548894 112548958 -84646474 + GA-rich Low_complexity Low_complexity 3 66 0 6 1443 351 311 69 80 chr1 112549618 112549793 -84645639 + MTEa LTR MaLR 207 379 0 6 1443 4714 63 0 2 chr1 112551194 112551786 -84643646 - L1Md_F2 LINE L1 -351 6231 5641 6 1443 286 345 61 40 chr1 112552071 112552219 -84643213 - Tigger5 DNA MER2_type -2193 213 63 6 1443 204 111 0 0 chr1 112553048 112553084 -84642348 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1443 24 0 0 0 chr1 112553160 112553184 -84642248 + AT_rich Low_complexity Low_complexity 1 24 0 6 1443 1318 210 128 11 chr1 112553393 112553769 -84641663 + BGLII_Mus LTR ERVK 1 420 -2 6 1443 180 97 0 0 chr1 112553795 112553826 -84641606 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 6 1443 24 0 0 0 chr1 112553854 112553878 -84641554 + AT_rich Low_complexity Low_complexity 1 24 0 6 1443 1376 72 16 0 chr1 112553913 112554107 -84641325 - L1_Mus2 LINE L1 0 6566 6370 6 1443 3968 180 30 47 chr1 112554135 112556175 -84639257 + MMETn-int LTR ERVK 2356 6421 -985 7 1443 402 129 57 0 chr1 112556392 112556462 -84638970 + MMETn-int LTR ERVK 7331 7404 -2 7 1443 1784 162 54 88 chr1 112556462 112556869 -84638563 + RLTR9C LTR ERVK 1 393 0 7 1443 1090 70 7 7 chr1 112556869 112557014 -84638418 - L1_Mus2 LINE L1 -196 6370 6226 7 1443 495 317 93 93 chr1 112557147 112557523 -84637909 - MT2A LTR ERVL -157 376 1 7 1443 21 0 0 0 chr1 112557592 112557613 -84637819 + AT_rich Low_complexity Low_complexity 1 21 0 7 1443 423 0 0 0 chr1 112557663 112557710 -84637722 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1443 443 292 70 42 chr1 112557866 112558037 -84637395 + L1PB4 LINE L1 5618 5795 -505 7 1443 180 0 0 0 chr1 112558037 112558057 -84637375 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1443 443 292 70 42 chr1 112558057 112558171 -84637261 + L1PB4 LINE L1 5795 5911 -389 7 1443 1062 268 98 50 chr1 112558363 112558721 -84636711 + ORR1C1 LTR MaLR 9 383 -1 7 1443 741 270 12 27 chr1 112558722 112559019 -84636413 + ORR1C1-int LTR MaLR 1 424 -1085 7 1443 2144 247 60 19 chr1 112559008 112559603 -84635829 + ORR1C1-int LTR MaLR 890 1509 0 7 1443 1285 260 6 62 chr1 112559618 112559938 -84635494 + ORR1C1 LTR MaLR 12 313 -65 7 1443 6460 84 48 5 chr1 112559938 112561416 -84634016 - L1Md_F2 LINE L1 0 6582 5064 7 1443 17661 105 11 6 chr1 112561414 112564816 -84630616 - L1Md_F2 LINE L1 -2059 3824 404 7 1443 183 130 36 18 chr1 112564867 112564922 -84630510 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 7 1443 2693 123 5 7 chr1 112565000 112565417 -84630015 - L1_Mus3 LINE L1 -1 6637 6222 8 1443 1348 130 0 0 chr1 112565418 112565626 -84629806 + L1_Mm LINE L1 5016 5223 -660 8 1443 372 317 34 78 chr1 112565885 112566512 -84628920 + L1M2 LINE L1 4758 5356 -787 8 1443 3046 68 2 8 chr1 112567043 112567441 -84627991 - MTA_Mm LTR MaLR 0 396 1 8 1443 7061 97 9 69 chr1 112567441 112568607 -84626825 - MTA_Mm-int LTR MaLR 0 1098 2 8 1443 2941 77 8 8 chr1 112568609 112569004 -84626428 - MTA_Mm LTR MaLR -1 395 1 8 1443 633 263 31 82 chr1 112569004 112569356 -84626076 + L1_Mur2 LINE L1 960 1293 -5793 8 1443 1919 203 124 13 chr1 112569360 112569718 -84625714 + RLTR16 LTR ERVK 6 401 -104 8 1443 774 22 0 0 chr1 112569718 112569810 -84625622 + (TG)n Simple_repeat Simple_repeat 2 93 0 8 1443 1919 203 124 13 chr1 112569810 112569901 -84625531 + RLTR16 LTR ERVK 402 504 -1 8 1443 12881 201 30 25 chr1 112569902 112573034 -84622398 + L1_Mur2 LINE L1 1289 4437 -1440 8 1443 1680 77 8 21 chr1 112573034 112573274 -84622158 + L1_Mus1 LINE L1 6331 6567 0 8 1443 12881 201 30 25 chr1 112573274 112573287 -84622145 + L1_Mur2 LINE L1 4438 4448 -1429 8 1443 2407 231 28 88 chr1 112573356 112574063 -84621369 + Lx5 LINE L1 6370 7058 0 8 1443 478 290 49 16 chr1 112574067 112574315 -84621117 + L1_Rod LINE L1 5289 5609 -682 8 1443 34738 77 3 13 chr1 112574632 112580733 -84614699 - L1Md_F2 LINE L1 -13 6569 538 9 1443 478 200 11 0 chr1 112581533 112581628 -84613804 + MLT1E3 LTR MaLR 529 624 0 9 1443 36082 39 19 11 chr1 112585069 112586717 -84608715 - L1Md_T LINE L1 -1 6581 4878 9 1443 231 183 46 77 chr1 112586717 112586782 -84608650 + RMER20A LTR ERVK 186 248 -268 9 1443 36082 39 19 11 chr1 112586782 112588082 -84607350 - L1Md_T LINE L1 -1 4877 3532 9 1443 3985 71 4 0 chr1 112588082 112588604 -84606828 + L1Md_F2 LINE L1 6047 6570 -12 9 180 36082 45 19 12 chr1 112588604 112591686 -84603746 - L1Md_T LINE L1 -2352 3531 441 9 1444 234 269 0 0 chr1 112592101 112592153 -84603279 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 9 1444 27 0 0 0 chr1 112592245 112592272 -84603160 + AT_rich Low_complexity Low_complexity 1 27 0 9 1444 332 282 38 27 chr1 112592331 112592517 -84602915 + L1ME2 LINE L1 5650 5837 -327 9 1444 22 56 0 0 chr1 112594732 112594768 -84600664 + AT_rich Low_complexity Low_complexity 1 36 0 9 1444 4227 146 24 30 chr1 112594857 112595599 -84599833 + Lx LINE L1 5892 6629 -25 9 1444 1976 141 0 0 chr1 112595595 112595894 -84599538 - L1_Mm LINE L1 -126 5757 5459 1 1444 676 102 15 30 chr1 112595905 112596036 -84599396 + L1_Mus3 LINE L1 6510 6638 0 1 1444 4931 157 21 6 chr1 112596040 112596897 -84598535 + Lx LINE L1 5784 6653 -1 1 1444 27 62 0 0 chr1 112596935 112596983 -84598449 + AT_rich Low_complexity Low_complexity 1 48 0 1 1444 216 0 0 0 chr1 112597046 112597070 -84598362 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1444 23 0 0 0 chr1 112597564 112597587 -84597845 + AT_rich Low_complexity Low_complexity 1 23 0 1 1444 24 53 0 0 chr1 112597679 112597717 -84597715 + AT_rich Low_complexity Low_complexity 1 38 0 1 1444 3082 66 2 8 chr1 112597746 112598143 -84597289 + MTA_Mm LTR MaLR 2 396 0 1 1444 222 254 16 0 chr1 112598287 112598350 -84597082 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1444 3500 49 0 7 chr1 112598406 112598841 -84596591 - L1Md_F2 LINE L1 -14 6568 6137 1 1444 1508 233 65 53 chr1 112600329 112600741 -84594691 + MTC LTR MaLR 3 419 -2 1 1444 23 33 0 0 chr1 112601288 112601318 -84594114 + AT_rich Low_complexity Low_complexity 1 30 0 1 1444 28 29 0 0 chr1 112601943 112601978 -84593454 + AT_rich Low_complexity Low_complexity 1 35 0 1 1444 843 112 0 0 chr1 112602187 112602330 -84593102 + (TG)n Simple_repeat Simple_repeat 2 144 0 1 1444 496 365 19 0 chr1 112602331 112602490 -84592942 - B3 SINE B2 -54 162 1 1 1444 30 45 0 0 chr1 112603207 112603251 -84592181 + AT_rich Low_complexity Low_complexity 1 44 0 1 1444 27 0 0 0 chr1 112603333 112603360 -84592072 + AT_rich Low_complexity Low_complexity 1 27 0 1 1444 226 0 0 56 chr1 112603395 112603431 -84592001 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1444 306 309 35 35 chr1 112603475 112603589 -84591843 - Lx7 LINE L1 -216 7257 7143 1 1444 564 319 85 4 chr1 112603609 112603845 -84591587 - RLTR11A2 LTR ERVK -24 503 249 1 1444 2025 318 30 19 chr1 112603945 112604722 -84590710 - Lx7 LINE L1 -584 7112 6328 1 1444 265 272 50 42 chr1 112604745 112604864 -84590568 - MTC LTR MaLR -16 403 284 1 1444 980 53 0 22 chr1 112604869 112605004 -84590428 + B1_Mm SINE Alu 14 145 -2 1 1444 442 319 59 0 chr1 112605015 112605165 -84590267 - MTC LTR MaLR -167 252 95 1 1444 1069 310 73 30 chr1 112605191 112605820 -84589612 - Lx7 LINE L1 -1424 6272 5617 1 1444 31 0 0 0 chr1 112605850 112605881 -84589551 + AT_rich Low_complexity Low_complexity 1 31 0 1 1444 22 0 0 0 chr1 112606022 112606044 -84589388 + AT_rich Low_complexity Low_complexity 1 22 0 1 1444 243 88 0 0 chr1 112606200 112606234 -84589198 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1444 592 349 12 58 chr1 112606349 112606778 -84588654 - Lx9 LINE L1 -472 7172 6764 1 1444 654 271 16 65 chr1 112606896 112607282 -84588150 + L1_Mur3 LINE L1 1472 1838 -4042 1 1444 631 168 42 8 chr1 112607342 112607462 -84587970 + RLTR22_Mur LTR ERVK 1725 1848 0 1 1444 321 82 0 0 chr1 112607586 112607635 -84587797 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 1 1444 25 51 0 0 chr1 112607882 112607921 -84587511 + AT_rich Low_complexity Low_complexity 1 39 0 1 1444 21 36 0 0 chr1 112608828 112608856 -84586576 + AT_rich Low_complexity Low_complexity 1 28 0 1 1444 25 0 0 0 chr1 112608912 112608937 -84586495 + AT_rich Low_complexity Low_complexity 1 25 0 1 1444 320 215 0 0 chr1 112608962 112609041 -84586391 - Lx6 LINE L1 -1 7459 7381 1 1444 351 44 0 0 chr1 112609046 112609091 -84586341 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1444 218 197 0 78 chr1 112609094 112609171 -84586261 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1444 267 219 0 0 chr1 112609183 112609279 -84586153 + CT-rich Low_complexity Low_complexity 1 96 0 1 1444 1955 220 76 50 chr1 112609279 112609790 -84585642 - Lx6 LINE L1 -674 7022 6467 1 1444 437 0 19 0 chr1 112609790 112609843 -84585589 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1 1444 1955 209 67 51 chr1 112609843 112609944 -84585488 - Lx6 LINE L1 -994 6466 6364 1 1444 502 315 82 14 chr1 112609940 112610233 -84585199 - Lx7 LINE L1 -1457 6239 5927 1 1444 21 0 0 0 chr1 112610635 112610656 -84584776 + AT_rich Low_complexity Low_complexity 1 21 0 1 1444 21 82 0 0 chr1 112610870 112610919 -84584513 + AT_rich Low_complexity Low_complexity 1 49 0 1 1444 4947 52 19 0 chr1 112612297 112612928 -84582504 - L1Md_F2 LINE L1 0 6582 5940 1 1444 432 158 0 0 chr1 112612954 112613030 -84582402 + (TAG)n Simple_repeat Simple_repeat 1 76 0 1 1444 302 275 12 0 chr1 112613247 112613327 -84582105 - Tigger5 DNA MER2_type -3 2403 2323 1 1444 932 329 50 16 chr1 112613401 112613761 -84581671 - MTE2a LTR MaLR -28 351 1 1 1444 14263 112 19 13 chr1 112614187 112616902 -84578530 - L1VL4 LINE L1 -366 3193 472 1 1444 1013 222 13 9 chr1 112616929 112617156 -84578276 + Lx5 LINE L1 397 624 -6462 1 1444 4103 163 14 26 chr1 112617146 112618039 -84577393 + Lx5 LINE L1 1176 2063 -3814 1 1444 378 0 0 0 chr1 112618039 112618081 -84577351 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1444 4103 168 18 32 chr1 112618081 112618113 -84577319 + Lx5 LINE L1 2064 2088 -3789 1 1444 8439 210 19 16 chr1 112618108 112619698 -84575734 + Lx5 LINE L1 3812 5399 -478 1 1444 213 39 0 0 chr1 112619698 112619724 -84575708 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1444 8439 233 64 13 chr1 112619724 112621256 -84574176 + Lx5 LINE L1 5400 7047 -3 1 1444 225 0 0 0 chr1 112622056 112622081 -84573351 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1444 1213 249 51 6 chr1 112622106 112622421 -84573011 - ORR1A4 LTR MaLR 0 329 1 1 1444 333 198 0 0 chr1 112622421 112622502 -84572930 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1444 23 0 0 0 chr1 112622813 112622836 -84572596 + AT_rich Low_complexity Low_complexity 1 23 0 1 1444 754 302 112 24 chr1 112623243 112623582 -84571850 + ORR1D2 LTR MaLR 1 369 -1 1 1444 228 122 0 0 chr1 112623708 112623749 -84571683 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1444 28 0 0 0 chr1 112624316 112624344 -84571088 + AT_rich Low_complexity Low_complexity 1 28 0 1 1444 835 168 142 0 chr1 112624857 112625047 -84570385 - L1_Mur1 LINE L1 -378 5499 5283 1 1444 1074 120 0 0 chr1 112625056 112625273 -84570159 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 1 1444 868 121 92 0 chr1 112625273 112625414 -84570018 - B2_Mm2 SINE B2 -40 155 2 1 1444 7003 168 17 18 chr1 112625414 112626826 -84568606 - L1_Mur1 LINE L1 -581 5296 3887 1 1444 975 149 148 66 chr1 112626835 112627117 -84568315 + L1_Mus4 LINE L1 6362 6636 0 1 1444 3247 221 58 129 chr1 112627118 112628590 -84566842 - L1_Mur1 LINE L1 -1989 3888 2589 1 1444 5029 176 28 24 chr1 112628590 112629614 -84565818 - Lx2 LINE L1 -1 6996 5969 1 1444 3247 221 58 129 chr1 112629614 112630137 -84565295 - L1_Mur1 LINE L1 -3289 2588 2035 1 1444 2548 199 37 4 chr1 112630174 112630659 -84564773 - RLTR17 LTR ERVK -80 612 112 1 1444 292 257 205 1 chr1 112630726 112630861 -84564571 - L1_Mur1 LINE L1 -6157 827 690 1 1444 241 228 0 52 chr1 112630988 112631085 -84564347 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 1 1444 480 228 0 0 chr1 112631117 112631231 -84564201 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 1 1444 1189 262 66 71 chr1 112631300 112631829 -84563603 + RMER20A LTR ERVK 1 496 -131 1 1444 966 232 28 104 chr1 112632174 112632702 -84562730 - L1_Rod LINE L1 -1133 4714 4227 1 1444 198 91 0 0 chr1 112632703 112632736 -84562696 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1444 8014 58 0 0 chr1 112632762 112634326 -84561106 - L1Md_T LINE L1 -1 6581 5018 1 1444 1108 36 0 14 chr1 112634343 112634484 -84560948 - B1_Mus1 SINE Alu -1 147 9 1 1444 1925 281 69 71 chr1 112634486 112635787 -84559645 - L1_Rod LINE L1 -1658 4189 2891 1 1444 1524 19 0 0 chr1 112636025 112636232 -84559200 + (TTC)n Simple_repeat Simple_repeat 1 207 0 1 1444 1256 146 5 5 chr1 112636259 112636472 -84558960 - L1_Mus4 LINE L1 -26 6610 6398 1 1444 1850 212 78 16 chr1 112636873 112637589 -84557843 + L1_Mur2 LINE L1 885 1679 -4198 1 1444 1488 194 83 52 chr1 112637589 112637915 -84557517 + MT2B LTR ERVL 1 336 -265 1 1444 638 214 20 2 chr1 112637915 112638127 -84557305 + L1_Mur2 LINE L1 1849 2074 -3806 1 1444 240 86 0 0 chr1 112638127 112638162 -84557270 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1444 456 194 74 16 chr1 112638189 112638324 -84557108 + L1_Mur2 LINE L1 2352 2485 -3392 1 1444 896 219 41 111 chr1 112638381 112638471 -84556961 + L1_Mur2 LINE L1 2907 3000 -2877 1 1444 324 0 0 0 chr1 112638471 112638507 -84556925 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1444 896 219 41 111 chr1 112638507 112638527 -84556905 + L1_Mur2 LINE L1 3001 3014 -2863 1 1444 471 184 0 27 chr1 112638527 112638639 -84556793 + Lx2 LINE L1 6888 6996 -1 1 1444 896 219 41 111 chr1 112638639 112638988 -84556444 + L1_Mur2 LINE L1 3015 3334 -2543 1 1444 1968 99 4 0 chr1 112638984 112639256 -84556176 - L1_Mm LINE L1 -309 5574 5302 1 1444 6887 104 11 3 chr1 112639278 112640250 -84555182 + L1_Mus2 LINE L1 5587 6566 0 1 1444 6255 179 123 5 chr1 112640250 112640913 -84554519 + L1_Mur2 LINE L1 3320 4076 -1801 1 1444 633 33 33 0 chr1 112640913 112641005 -84554427 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 1444 6255 179 123 5 chr1 112641005 112641827 -84553605 + L1_Mur2 LINE L1 4077 4980 -897 1 1444 627 250 7 0 chr1 112641844 112641988 -84553444 - Lx5 LINE L1 -707 6343 6199 1 1444 284 324 108 0 chr1 112642639 112642741 -84552691 + B1_Mus2 SINE Alu 2 114 -33 1 1444 1832 156 33 12 chr1 112642859 112643190 -84552242 + RLTR19C LTR ERVK 1 338 -168 1 1444 475 51 0 37 chr1 112643190 112643271 -84552161 + (TTTTG)n Simple_repeat Simple_repeat 3 80 0 1 1444 4975 73 7 7 chr1 112643357 112644099 -84551333 - L1_Mus1 LINE L1 -327 6240 5499 1 1444 390 321 67 31 chr1 112644129 112644322 -84551110 + Lx8 LINE L1 7126 7325 -148 1 1444 1884 197 161 115 chr1 112644329 112644913 -84550519 + RMER19C LTR ERVK 1 611 0 1 1444 207 114 0 0 chr1 112645061 112645096 -84550336 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1444 519 256 49 16 chr1 112645832 112645955 -84549477 - ETnERV2-int LTR ERVK -210 7196 7070 1 1444 2448 256 32 21 chr1 112646041 112646252 -84549180 - Lx2B LINE L1 -5 6995 6774 1 1444 1488 161 88 71 chr1 112646252 112646660 -84548772 + RLTR9F LTR ERVK 1 415 0 1 1444 2448 256 32 21 chr1 112646660 112647100 -84548332 - Lx2B LINE L1 -227 6773 6337 1 1444 782 239 66 4 chr1 112647133 112647389 -84548043 - Lx2B LINE L1 -826 6174 5903 1 1444 21 57 0 0 chr1 112648724 112648759 -84546673 + AT_rich Low_complexity Low_complexity 1 35 0 1 1444 21 0 0 0 chr1 112648995 112649016 -84546416 + AT_rich Low_complexity Low_complexity 1 21 0 1 1444 1503 282 67 60 chr1 112649382 112649903 -84545529 - RMER2 LTR ERV1 0 567 43 1 1444 3403 76 0 0 chr1 112650177 112650613 -84544819 - L1_Mus1 LINE L1 0 6567 6132 1 1444 4119 58 9 2 chr1 112650613 112651144 -84544288 + L1_Mus1 LINE L1 5607 6141 -426 1 1444 238 286 114 0 chr1 112651157 112651227 -84544205 - ID_B1 SINE B4 -53 171 94 1 1444 251 130 19 0 chr1 112651228 112651282 -84544150 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 1 1444 2062 213 57 4 chr1 112651287 112651792 -84543640 - RMER6C LTR ERVK 0 690 159 1 1444 423 68 0 0 chr1 112651982 112652041 -84543391 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1444 42 20 0 0 chr1 112652347 112652396 -84543036 + AT_rich Low_complexity Low_complexity 1 49 0 1 1444 888 238 0 0 chr1 112652500 112652686 -84542746 - ORR1B1 LTR MaLR 0 394 186 1 1444 1012 87 65 0 chr1 112652686 112652824 -84542608 + B1_Mus1 SINE Alu 1 147 -1 1 1444 837 273 33 5 chr1 112652824 112652847 -84542585 - ORR1B1 LTR MaLR -193 185 163 1 1444 192 111 0 0 chr1 112652852 112652888 -84542544 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1444 1072 144 84 0 chr1 112652888 112653090 -84542342 - ORR1B1 LTR MaLR -175 219 1 2 1444 200 254 0 33 chr1 112653832 112653893 -84541539 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 1444 251 318 43 43 chr1 112654087 112654202 -84541230 - B4A SINE B4 -175 117 3 2 1444 324 102 0 0 chr1 112654392 112654441 -84540991 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1444 405 333 0 18 chr1 112654482 112654592 -84540840 - RSINE1 SINE B4 -31 134 27 2 1444 2935 206 127 78 chr1 112654973 112655192 -84540240 - RLTR25A LTR ERVK -43 1060 881 2 1444 534 79 0 0 chr1 112655192 112655268 -84540164 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1444 2935 206 164 71 chr1 112655268 112656025 -84539407 - RLTR25A LTR ERVK -223 880 3 2 1444 3034 86 31 0 chr1 112656151 112656569 -84538863 - L1_Mus1 LINE L1 -5 6562 6132 2 1444 19328 112 10 0 chr1 112657038 112660110 -84535322 + L1_Mus1 LINE L1 2888 5992 -575 2 1444 185 0 40 0 chr1 112660503 112660528 -84534904 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1444 528 59 0 0 chr1 112660557 112660625 -84534807 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1444 1426 231 19 22 chr1 112660990 112661308 -84534124 + Lx4A LINE L1 6742 7058 0 2 1444 240 200 36 0 chr1 112661555 112661610 -84533822 - MTD LTR MaLR -2 417 361 2 1444 236 175 0 0 chr1 112661610 112661673 -84533759 - MT2A LTR ERVL 0 533 471 2 1444 403 248 17 8 chr1 112661694 112661812 -84533620 - MT2A LTR ERVL -44 489 371 2 1444 675 247 89 124 chr1 112661825 112662107 -84533325 - MT2A LTR ERVL -261 272 1 2 1444 988 321 55 10 chr1 112662153 112662464 -84532968 - MTD LTR MaLR -94 325 1 2 1444 673 100 36 0 chr1 112662571 112662681 -84532751 + L1_Mus1 LINE L1 6453 6566 -1 2 1444 444 181 16 8 chr1 112662751 112662879 -84532553 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 1444 24 53 0 0 chr1 112663129 112663167 -84532265 + AT_rich Low_complexity Low_complexity 1 38 0 2 1444 2441 165 12 7 chr1 112663574 112663996 -84531436 + Lx3B LINE L1 6470 6893 -80 2 1444 23 33 0 0 chr1 112664018 112664048 -84531384 + AT_rich Low_complexity Low_complexity 1 30 0 2 1444 321 328 372 14 chr1 112664064 112664418 -84531014 - Lx8 LINE L1 -780 6693 6213 2 1444 692 329 30 18 chr1 112664743 112665077 -84530355 - Lx8 LINE L1 -7 5840 5503 2 1444 22 0 0 0 chr1 112665344 112665366 -84530066 + AT_rich Low_complexity Low_complexity 1 22 0 2 1444 23 33 0 0 chr1 112665413 112665443 -84529989 + AT_rich Low_complexity Low_complexity 1 30 0 2 1444 3522 199 72 8 chr1 112665560 112666296 -84529136 + RMER13B LTR ERVK 1 783 -125 2 1444 1470 214 49 16 chr1 112666586 112666936 -84528496 + ORR1C1 LTR MaLR 5 378 0 2 1444 627 270 158 14 chr1 112667867 112668310 -84527122 + L1_Mur3 LINE L1 4616 5122 -758 2 1444 2672 254 47 98 chr1 112670598 112671550 -84523882 - Lx5 LINE L1 -3 7047 6144 2 1444 2100 116 47 20 chr1 112671550 112671893 -84523539 + RLTR9E LTR ERVK 1 352 -57 2 1444 817 188 108 0 chr1 112671895 112672071 -84523361 - L1_Mur2 LINE L1 -727 5153 4959 2 1444 3832 158 88 191 chr1 112672083 112672414 -84523018 - L1_Mur2 LINE L1 -2031 3846 3533 2 1444 233 224 0 105 chr1 112672414 112672509 -84522923 + LTR89 LTR ERVL? 168 252 -627 2 1444 3832 158 88 191 chr1 112672509 112673010 -84522422 - L1_Mur2 LINE L1 -2031 3532 3055 2 1444 1263 94 0 0 chr1 112673010 112673190 -84522242 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1444 3832 158 88 191 chr1 112673190 112673710 -84521722 - L1_Mur2 LINE L1 -2823 3054 2549 2 1444 1425 210 94 13 chr1 112673684 112674196 -84521236 - L1_Mur2 LINE L1 -4434 1443 889 2 1444 24 32 0 0 chr1 112675181 112675212 -84520220 + AT_rich Low_complexity Low_complexity 1 31 0 2 1444 415 45 30 0 chr1 112675696 112675762 -84519670 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 2 1444 450 0 0 0 chr1 112675770 112675820 -84519612 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 1444 1070 80 0 7 chr1 112675820 112675959 -84519473 - B1_Mus2 SINE Alu -9 138 1 2 1444 392 143 0 43 chr1 112676395 112676512 -84518920 + T-rich Low_complexity Low_complexity 1 112 0 2 1444 382 302 25 25 chr1 112676561 112676724 -84518708 + MER57F LTR ERV1 272 434 -2 2 1444 25 31 0 0 chr1 112677100 112677132 -84518300 + AT_rich Low_complexity Low_complexity 1 32 0 2 1444 22 56 0 0 chr1 112677219 112677255 -84518177 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 23 0 0 0 chr1 112677551 112677574 -84517858 + AT_rich Low_complexity Low_complexity 1 23 0 2 1444 53 33 0 32 chr1 112677972 112678065 -84517367 + AT_rich Low_complexity Low_complexity 1 90 0 2 1444 236 222 15 31 chr1 112678070 112678135 -84517297 + ORR1D2 LTR MaLR 1 64 -306 2 1444 235 389 18 9 chr1 112678229 112678343 -84517089 - RMER20B LTR ERVK -31 596 482 2 1444 935 293 19 4 chr1 112678845 112679102 -84516330 + ORR1D2 LTR MaLR 49 309 -61 2 1444 22 0 0 0 chr1 112679166 112679188 -84516244 + AT_rich Low_complexity Low_complexity 1 22 0 2 1444 21 0 0 0 chr1 112679269 112679290 -84516142 + AT_rich Low_complexity Low_complexity 1 21 0 2 1444 1237 161 10 143 chr1 112679331 112679736 -84515696 - RMER17C LTR ERVK 0 410 60 2 1444 252 363 31 46 chr1 112680027 112680157 -84515275 + RSINE1 SINE B4 2 129 -36 2 1444 515 316 95 37 chr1 112680437 112680815 -84514617 + Lx9 LINE L1 7067 7466 -178 2 1444 405 0 0 0 chr1 112680816 112680861 -84514571 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1444 221 96 57 19 chr1 112680972 112681025 -84514407 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1444 21 36 0 0 chr1 112681132 112681160 -84514272 + AT_rich Low_complexity Low_complexity 1 28 0 2 1444 17219 108 18 6 chr1 112681181 112684462 -84510970 + L1VL4 LINE L1 242 3559 0 2 1444 244 329 95 37 chr1 112685174 112685499 -84509933 + L1MA4 LINE L1 5587 5930 -370 2 1444 239 54 0 26 chr1 112685817 112685855 -84509577 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2 1444 21 36 0 0 chr1 112686764 112686792 -84508640 + AT_rich Low_complexity Low_complexity 1 28 0 2 1444 558 273 91 78 chr1 112687249 112687610 -84507822 + RLTR9A LTR ERVK 2 367 -1 2 1444 23 0 0 29 chr1 112689202 112689216 -84506216 + AT_rich Low_complexity Low_complexity 1 14 0 2 1444 788 254 4 78 chr1 112689216 112689447 -84505985 - B3 SINE B2 0 216 3 2 1444 23 0 0 29 chr1 112689447 112689466 -84505966 + AT_rich Low_complexity Low_complexity 1 19 0 2 1444 3152 175 16 9 chr1 112689729 112690121 -84505311 - RLTR33 LTR ERVK 0 678 286 2 1444 2411 124 92 74 chr1 112690121 112690624 -84504808 + RLTR1B LTR ERV1 1 512 0 2 1444 3152 175 16 9 chr1 112690624 112690784 -84504648 - RLTR33 LTR ERVK -393 285 122 2 1444 5737 132 5 3 chr1 112690784 112691676 -84503756 - L1VL2 LINE L1 -5366 969 77 2 1444 205 98 24 24 chr1 112691936 112691978 -84503454 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1444 1550 217 60 8 chr1 112692464 112692528 -84502904 - MTC LTR MaLR 0 421 351 2 1444 309 15 41 68 chr1 112692528 112692601 -84502831 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 1444 1550 217 60 8 chr1 112692601 112692936 -84502496 - MTC LTR MaLR -71 350 2 2 1444 1943 160 79 19 chr1 112693077 112693446 -84501986 + RMER10B LTR ERVL 8 398 0 2 1444 648 276 153 68 chr1 112693463 112693696 -84501736 - MTD LTR MaLR -20 399 139 2 1444 2185 224 55 55 chr1 112693696 112694310 -84501122 - RLTR18 LTR ERVK -2 614 1 2 1444 648 276 153 68 chr1 112694310 112694402 -84501030 - MTD LTR MaLR -281 138 46 2 1444 926 127 28 0 chr1 112694497 112694639 -84500793 + B1_Mus1 SINE Alu 3 148 0 2 1444 339 270 55 78 chr1 112695375 112695632 -84499800 + RMER17C LTR ERVK 3 253 -157 2 1444 281 224 0 0 chr1 112696374 112696423 -84499009 - LSU-rRNA_Hsa rRNA rRNA -1429 3606 3558 2 1444 855 212 15 141 chr1 112696718 112696878 -84498554 + RLTR19-int LTR ERVK 1128 1262 -1976 2 1444 285 29 0 0 chr1 112696878 112696912 -84498520 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1444 855 212 15 141 chr1 112696912 112697091 -84498341 + RLTR19-int LTR ERVK 1263 1424 -1814 2 1444 1836 238 35 5 chr1 112697317 112697751 -84497681 + RLTR19-int LTR ERVK 2331 2777 -3360 2 1444 1241 244 0 41 chr1 112697749 112698065 -84497367 + RMER17C-int LTR ERVK 1923 2225 -1013 2 1444 3539 210 50 42 chr1 112698341 112699311 -84496121 + RMER17C-int LTR ERVK 2262 3238 0 2 1444 244 246 0 32 chr1 112699314 112699377 -84496055 + RMER17C LTR ERVK 4 64 -346 2 1444 791 86 8 0 chr1 112699409 112699526 -84495906 + (TC)n Simple_repeat Simple_repeat 1 118 0 2 1444 251 248 35 35 chr1 112700345 112700487 -84494945 - L1M5 LINE L1 -800 5440 5299 2 1444 468 0 0 0 chr1 112700537 112700589 -84494843 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1444 771 167 96 42 chr1 112701175 112701414 -84494018 + RMER6D LTR ERVK 3 303 -417 2 1444 923 266 150 65 chr1 112701429 112701965 -84493467 - RLTR17 LTR ERVK 0 692 60 2 1444 4072 159 22 22 chr1 112701980 112702715 -84492717 - Lx LINE L1 -4 6650 5916 2 1444 7146 165 20 2 chr1 112702715 112704071 -84491361 + Lx2 LINE L1 4553 5925 -1072 2 1444 30033 75 55 4 chr1 112704195 112709964 -84485468 - L1Md_F2 LINE L1 -3 6582 399 2 1444 432 211 55 31 chr1 112709984 112710111 -84485321 + RMER6D LTR ERVK 379 508 -182 2 1444 785 263 88 31 chr1 112710155 112710503 -84484929 - RMER2 LTR ERV1 -147 420 3 2 1444 264 211 0 0 chr1 112711160 112711236 -84484196 + CT-rich Low_complexity Low_complexity 2 77 0 2 1444 231 204 0 0 chr1 112711237 112711281 -84484151 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2 1444 313 356 0 29 chr1 112711915 112712051 -84483381 - ID_B1 SINE B4 -5 219 88 2 1444 19874 86 107 2 chr1 112713162 112716972 -84478460 - L1Md_F2 LINE L1 0 6582 2341 2 1444 23 0 0 0 chr1 112717124 112717147 -84478285 + AT_rich Low_complexity Low_complexity 1 23 0 2 1444 23 0 0 0 chr1 112717405 112717428 -84478004 + AT_rich Low_complexity Low_complexity 1 23 0 2 1444 1330 224 69 17 chr1 112717827 112718019 -84477413 - RMER17C LTR ERVK 0 410 222 2 1444 261 0 0 0 chr1 112718019 112718048 -84477384 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 2 1444 1330 224 69 17 chr1 112718048 112718201 -84477231 - RMER17C LTR ERVK -189 221 47 2 1444 1425 305 63 15 chr1 112719199 112720305 -84475127 + L1_Rod LINE L1 903 2062 -3785 2 1444 29 0 0 0 chr1 112720362 112720391 -84475041 + AT_rich Low_complexity Low_complexity 1 29 0 2 1444 245 351 24 23 chr1 112720459 112720560 -84474872 + B1_Mur2 SINE Alu 21 117 -32 2 1444 255 103 0 0 chr1 112720607 112720646 -84474786 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1444 946 116 6 50 chr1 112721168 112721349 -84474083 + Lx LINE L1 6482 6654 0 2 180 7491 181 33 46 chr1 112721346 112723055 -84472377 + L1_Mur1 LINE L1 2149 3835 -2051 2 1445 2133 264 66 7 chr1 112723055 112723600 -84471832 + RLTR20B3 LTR ERVK 1 577 0 2 1445 258 93 0 0 chr1 112723600 112723643 -84471789 + L1_Mur1 LINE L1 3830 3872 -2014 2 1445 3333 198 27 11 chr1 112723637 112724366 -84471066 + Lx2B LINE L1 4762 5502 -375 2 1445 2356 207 28 24 chr1 112724358 112724897 -84470535 + Lx2B LINE L1 5794 6334 -666 2 1445 700 219 51 118 chr1 112725324 112725578 -84469854 - Lx9 LINE L1 -581 7063 6827 2 1445 180 0 0 0 chr1 112726227 112726247 -84469185 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1445 244 318 0 0 chr1 112727178 112727241 -84468191 + GA-rich Low_complexity Low_complexity 3 65 0 3 1445 23 54 0 0 chr1 112727400 112727437 -84467995 + AT_rich Low_complexity Low_complexity 1 37 0 3 1445 238 295 125 84 chr1 112728055 112728351 -84467081 + LTR52 LTR ERVL 1 308 -113 3 1445 22 0 0 0 chr1 112728384 112728406 -84467026 + AT_rich Low_complexity Low_complexity 1 22 0 3 1445 791 283 13 4 chr1 112728793 112729020 -84466412 - Lx6 LINE L1 -1 7459 7231 3 1445 1646 261 98 24 chr1 112729017 112729476 -84465956 + Lx6 LINE L1 6633 7125 -335 3 1445 753 176 0 0 chr1 112729479 112729621 -84465811 + (TATATG)n Simple_repeat Simple_repeat 3 144 0 3 1445 381 274 39 10 chr1 112729621 112729724 -84465708 + Lx6 LINE L1 7115 7220 -240 3 1445 21 0 0 0 chr1 112729866 112729887 -84465545 + AT_rich Low_complexity Low_complexity 1 21 0 3 1445 549 0 0 0 chr1 112730203 112730264 -84465168 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1445 293 344 20 20 chr1 112730624 112730722 -84464710 + B3 SINE B2 72 169 -47 3 1445 198 185 61 8 chr1 112730907 112731038 -84464394 + (TA)n Simple_repeat Simple_repeat 1 138 0 3 1445 254 333 12 0 chr1 112731164 112731245 -84464187 - B4A SINE B4 -22 270 189 3 1445 23 0 0 0 chr1 112732344 112732367 -84463065 + AT_rich Low_complexity Low_complexity 1 23 0 3 1445 2985 130 6 8 chr1 112733011 112733493 -84461939 + Lx3A LINE L1 6491 6971 -10 3 1445 371 21 21 0 chr1 112733494 112733542 -84461890 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 3 1445 25 0 0 0 chr1 112734044 112734069 -84461363 + AT_rich Low_complexity Low_complexity 1 25 0 3 1445 329 340 82 14 chr1 112734103 112734249 -84461183 - RSINE1 SINE B4 0 165 10 3 1445 354 329 66 20 chr1 112734676 112734828 -84460604 - Lx7 LINE L1 -943 6753 6595 3 1445 211 306 0 0 chr1 112735186 112735248 -84460184 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1445 247 289 132 0 chr1 112735329 112735495 -84459937 + MER2 DNA MER2_type 86 273 -72 3 1445 932 70 8 0 chr1 112735588 112735717 -84459715 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 3 1445 498 33 0 0 chr1 112735933 112735993 -84459439 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1445 589 299 65 113 chr1 112736345 112736963 -84458469 - L1MB3 LINE L1 -213 5970 5383 3 1445 519 96 0 0 chr1 112736989 112737062 -84458370 - L1Md_F2 LINE L1 -605 5278 5206 3 1445 2814 47 0 0 chr1 112737059 112737400 -84458032 + L1Md_F2 LINE L1 5245 5585 -298 3 1445 7983 46 2 3 chr1 112737401 112738386 -84457046 + L1Md_F2 LINE L1 5587 6570 -12 3 1445 305 319 115 37 chr1 112738406 112738676 -84456756 - L1M2 LINE L1 -804 5339 5049 3 1445 610 129 0 19 chr1 112739419 112739522 -84455910 - Lx2B LINE L1 -540 6460 6360 3 1445 2350 168 118 4 chr1 112739524 112739991 -84455441 + Lx2B LINE L1 6463 6982 -18 3 1445 25 0 0 0 chr1 112740518 112740543 -84454889 + AT_rich Low_complexity Low_complexity 1 25 0 3 1445 8221 137 16 6 chr1 112740996 112743203 -84452229 + Lx3A LINE L1 4741 6972 -9 3 1445 4909 135 11 45 chr1 112743470 112744362 -84451070 - RLTR22_Mur LTR ERVK -973 875 14 3 1445 12238 66 3 2 chr1 112744373 112746667 -84448765 - L1Md_F2 LINE L1 -23 6559 4263 3 1445 7591 86 1 5 chr1 112746661 112747731 -84447701 + L1Md_F2 LINE L1 3190 4255 -1628 3 1445 1068 165 34 0 chr1 112748023 112748199 -84447233 - ORR1A2 LTR MaLR -51 276 95 3 1445 4463 87 17 20 chr1 112748199 112748856 -84446576 - L1Md_F2 LINE L1 -1 6581 5927 3 1445 3119 53 2 10 chr1 112750933 112751332 -84444100 - L1_Mm LINE L1 -310 5573 5178 3 1445 2715 40 8 31 chr1 112751332 112751690 -84443742 + L1Md_F3 LINE L1 6221 6570 -14 3 1445 22 0 0 0 chr1 112752057 112752079 -84443353 + AT_rich Low_complexity Low_complexity 1 22 0 3 1445 26 30 0 0 chr1 112752100 112752133 -84443299 + AT_rich Low_complexity Low_complexity 1 33 0 3 1445 880 164 6 6 chr1 112752300 112752478 -84442954 + GA-rich Low_complexity Low_complexity 3 180 0 3 1445 2959 324 50 62 chr1 112752790 112754506 -84440926 + MYSERV6-int LTR ERVK 548 2282 -6677 3 1445 991 110 7 0 chr1 112754506 112754652 -84440780 + B1_Mus1 SINE Alu 2 148 0 3 1445 2959 324 50 62 chr1 112754652 112755192 -84440240 + MYSERV6-int LTR ERVK 2283 2776 -6183 3 1445 318 292 25 55 chr1 112755192 112755355 -84440077 + RLTR15 LTR ERVK 135 292 -67 3 1445 468 233 32 24 chr1 112755491 112755614 -84439818 - L1_Mur3 LINE L1 -138 5742 5619 3 1445 531 286 57 19 chr1 112755918 112756128 -84439304 + RLTR45 LTR ERVK 265 482 0 3 1445 4762 236 43 10 chr1 112756135 112757471 -84437961 - L1_Mur3 LINE L1 -266 5614 4235 3 1445 1172 267 81 32 chr1 112757673 112757764 -84437668 - Lx6 LINE L1 -473 6987 6877 3 1445 1125 78 0 0 chr1 112757764 112757917 -84437515 + (TC)n Simple_repeat Simple_repeat 2 154 0 3 1445 1172 267 81 32 chr1 112757917 112758231 -84437201 - Lx6 LINE L1 -584 6876 6562 3 1445 996 361 84 43 chr1 112758277 112759206 -84436226 - Lx8 LINE L1 -232 7241 6275 3 1445 245 211 17 17 chr1 112759488 112759546 -84435886 - MTE-int LTR MaLR -859 721 664 3 1445 1063 207 43 17 chr1 112759640 112759871 -84435561 - Lx LINE L1 -1 6653 6417 3 1445 2787 138 31 13 chr1 112759861 112760315 -84435117 - Lx2 LINE L1 -353 6644 6183 3 1445 7908 52 6 2 chr1 112760339 112761845 -84433587 - L1Md_F2 LINE L1 -3 6579 5068 3 1445 5694 184 47 12 chr1 112761838 112763291 -84432141 - Lx2 LINE L1 -809 6188 4688 3 1445 503 133 0 0 chr1 112763302 112763377 -84432055 - L1VL4 LINE L1 -6023 279 205 3 1445 1446 189 88 10 chr1 112764979 112765284 -84430148 + ORR1A4 LTR MaLR 1 329 0 3 1445 3027 143 14 2 chr1 112765323 112765820 -84429612 - Lx LINE L1 -7 6647 6145 3 1445 1824 224 86 16 chr1 112766135 112766626 -84428806 - RMER6A LTR ERVK -231 525 1 3 1445 600 40 0 0 chr1 112766789 112766864 -84428568 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1445 23 0 0 0 chr1 112767116 112767139 -84428293 + AT_rich Low_complexity Low_complexity 1 23 0 3 1445 243 0 0 0 chr1 112767270 112767297 -84428135 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1445 333 0 0 0 chr1 112767590 112767627 -84427805 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1445 339 25 0 0 chr1 112767627 112767666 -84427766 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1445 420 345 7 0 chr1 112768336 112768484 -84426948 + RMER1A Other Other 300 448 -582 3 1445 2236 243 26 42 chr1 112768508 112769123 -84426309 + RMER1B Other Other 437 1041 -25 3 1445 669 287 93 55 chr1 112769220 112769568 -84425864 + MTD LTR MaLR 11 411 -8 3 1445 380 359 2 2 chr1 112771586 112771712 -84423720 + B1_Mur2 SINE Alu 1 126 -21 3 1445 24 0 0 0 chr1 112772025 112772049 -84423383 + AT_rich Low_complexity Low_complexity 1 24 0 3 1445 279 79 0 0 chr1 112773042 112773080 -84422352 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1445 324 0 0 0 chr1 112773080 112773115 -84422317 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1445 183 42 0 0 chr1 112773216 112773240 -84422192 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1445 3295 222 28 24 chr1 112773240 112774155 -84421277 - L1_Mur3 LINE L1 -2881 2999 2081 3 1445 221 174 0 21 chr1 112774183 112774230 -84421202 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1445 1115 241 210 66 chr1 112774261 112774737 -84420695 + RMER6C LTR ERVK 1 449 -271 3 1445 756 67 0 0 chr1 112774737 112774842 -84420590 + B1_Mm SINE Alu 43 147 0 3 1445 1115 241 210 66 chr1 112774842 112775127 -84420305 + RMER6C LTR ERVK 450 720 0 3 1445 2411 221 70 19 chr1 112775129 112776004 -84419428 - L1_Mur3 LINE L1 -3850 2030 1104 3 1445 483 73 0 0 chr1 112776146 112776214 -84419218 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1445 22 0 0 0 chr1 112776379 112776401 -84419031 + AT_rich Low_complexity Low_complexity 1 22 0 3 1445 4370 142 68 8 chr1 112776594 112777379 -84418053 - RMER17B LTR ERVK -126 832 1 3 1445 1184 101 33 27 chr1 112777778 112777962 -84417470 + B2_Mm2 SINE B2 4 188 -7 3 1445 259 161 48 0 chr1 112778427 112778489 -84416943 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 3 1445 186 421 0 0 chr1 112778689 112778765 -84416667 + MIR SINE MIR 4 79 -183 3 1445 306 187 22 11 chr1 112779179 112779271 -84416161 + CT-rich Low_complexity Low_complexity 2 94 0 3 1445 432 0 0 0 chr1 112779296 112779344 -84416088 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1445 527 0 16 0 chr1 112779346 112779409 -84416023 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1445 439 373 52 5 chr1 112779509 112779703 -84415729 + ID_B1 SINE B4 15 217 -7 3 1445 213 121 0 0 chr1 112780559 112780592 -84414840 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3 1445 255 317 103 28 chr1 112781111 112781218 -84414214 - MIR SINE MIR -68 194 80 3 1445 1602 36 0 0 chr1 112782956 112783152 -84412280 + L1Md_T LINE L1 6387 6582 0 3 1445 181 277 61 15 chr1 112783798 112783864 -84411568 - MIRc SINE MIR -124 144 76 3 1445 37 0 0 0 chr1 112787163 112787200 -84408232 + AT_rich Low_complexity Low_complexity 1 37 0 3 1445 326 299 74 48 chr1 112787684 112787993 -84407439 + L1M2 LINE L1 3253 3569 -2574 3 1445 469 296 70 60 chr1 112788097 112788298 -84407134 - B3 SINE B2 -12 204 2 3 1445 563 40 14 0 chr1 112788401 112788475 -84406957 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1445 512 285 91 69 chr1 112788682 112789046 -84406386 + RLTR18 LTR ERVK 111 616 0 3 1445 251 282 14 0 chr1 112789116 112789187 -84406245 + L1MA6 LINE L1 6041 6112 -188 3 1445 540 161 32 0 chr1 112789425 112789518 -84405914 + B2_Mm2 SINE B2 1 96 -99 3 1445 439 377 62 39 chr1 112790795 112791057 -84404375 + MTD LTR MaLR 6 287 -132 3 1445 23 33 0 0 chr1 112791246 112791276 -84404156 + AT_rich Low_complexity Low_complexity 1 30 0 3 1445 7189 40 14 0 chr1 112793261 112794156 -84401276 + L1Md_F3 LINE L1 5663 6570 -14 3 1445 690 106 28 14 chr1 112794429 112794572 -84400860 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 1445 206 227 58 8 chr1 112795248 112795368 -84400064 + (TA)n Simple_repeat Simple_repeat 2 127 0 3 1445 669 151 0 0 chr1 112796349 112796468 -84398964 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 1445 1316 256 40 63 chr1 112797089 112797468 -84397964 + ORR1C2 LTR MaLR 15 384 0 3 1445 929 71 34 54 chr1 112798015 112798154 -84397278 + B1_Mus1 SINE Alu 2 138 -10 3 1445 298 0 48 0 chr1 112798154 112798196 -84397236 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1445 437 0 0 19 chr1 112798984 112799038 -84396394 + (TTA)n Simple_repeat Simple_repeat 3 55 0 4 1445 241 265 11 46 chr1 112799245 112799332 -84396100 + MER67B LTR ERV1 308 391 -270 4 1445 30 0 0 0 chr1 112799512 112799542 -84395890 + AT_rich Low_complexity Low_complexity 1 30 0 4 1445 1021 262 105 14 chr1 112799550 112799921 -84395511 - Lx9 LINE L1 -26 7618 7214 4 1445 226 320 76 23 chr1 112800197 112800328 -84395104 + L2 LINE L2 2017 2154 -1265 4 1445 25 0 0 0 chr1 112800456 112800481 -84394951 + AT_rich Low_complexity Low_complexity 1 25 0 4 1445 1938 165 40 30 chr1 112800912 112801317 -84394115 + RLTR9E LTR ERVK 1 409 0 4 1445 529 132 0 0 chr1 112801320 112801396 -84394036 - tRNA-Lys-AAG tRNA tRNA 0 76 1 4 1445 1613 139 44 7 chr1 112801396 112801692 -84393740 - ETnERV2-int LTR ERVK -4045 3361 3055 4 1445 583 260 61 14 chr1 112801692 112801840 -84393592 - ETnERV2-int LTR ERVK -4798 2608 2454 4 1445 540 208 28 0 chr1 112801853 112801959 -84393473 - RLTR19-int LTR ERVK -5077 1060 952 4 1445 290 240 52 26 chr1 112801960 112802037 -84393395 - RLTR19-int LTR ERVK -4587 819 741 4 1445 258 125 0 0 chr1 112802030 112802078 -84393354 - RLTR19-int LTR ERVK -5218 188 141 4 1445 383 143 0 16 chr1 112802522 112802586 -84392846 - ETnERV2-int LTR ERVK -5091 2153 2091 4 1445 737 239 22 70 chr1 112802567 112802906 -84392526 - MMETn-int LTR ERVK -2930 384 1 4 1445 21 0 0 0 chr1 112803370 112803391 -84392041 + AT_rich Low_complexity Low_complexity 1 21 0 4 1445 210 67 21 43 chr1 112804031 112804078 -84391354 + (TTATA)n Simple_repeat Simple_repeat 5 50 0 4 1445 25 0 0 0 chr1 112804443 112804468 -84390964 + AT_rich Low_complexity Low_complexity 1 25 0 4 1445 36 0 0 0 chr1 112804549 112804585 -84390847 + AT_rich Low_complexity Low_complexity 1 36 0 4 1445 30 59 0 0 chr1 112805269 112805320 -84390112 + AT_rich Low_complexity Low_complexity 1 51 0 4 1445 1024 286 93 17 chr1 112805391 112805736 -84389696 - MTC LTR MaLR -50 371 1 4 1445 1568 190 9 77 chr1 112806085 112806525 -84388907 - RMER17C LTR ERVK 0 410 1 4 1445 222 37 0 0 chr1 112807110 112807137 -84388295 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1445 207 114 0 0 chr1 112807885 112807920 -84387512 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 4 1445 1127 290 61 33 chr1 112807924 112808352 -84387080 + Lx6 LINE L1 6844 7283 -177 4 1445 2020 217 26 13 chr1 112808571 112809025 -84386407 + RLTR16 LTR ERVK 1 460 -45 4 1445 854 340 40 40 chr1 112809045 112809495 -84385937 - Lx7 LINE L1 -399 7297 6848 4 1445 4501 221 22 29 chr1 112809654 112811005 -84384427 + ORR1A4-int LTR MaLR 723 1963 0 4 1445 1259 188 10 167 chr1 112811005 112811395 -84384037 + ORR1A4 LTR MaLR 1 329 0 4 1445 708 283 29 0 chr1 112813109 112813314 -84382118 - B3 SINE B2 -5 211 1 4 1445 487 411 0 0 chr1 112814015 112814178 -84381254 + RSINE1 SINE B4 3 165 0 4 1445 22 35 0 0 chr1 112814660 112814689 -84380743 + AT_rich Low_complexity Low_complexity 1 29 0 4 1445 394 252 32 11 chr1 112815422 112815566 -84379866 + B1_Mur2 SINE Alu 3 150 0 4 1445 226 186 50 17 chr1 112815567 112815627 -84379805 + A-rich Low_complexity Low_complexity 4 65 0 4 1445 22 35 0 0 chr1 112815818 112815847 -84379585 + AT_rich Low_complexity Low_complexity 1 29 0 4 1445 415 236 15 23 chr1 112816438 112816568 -84378864 + Lx9 LINE L1 7513 7641 -3 4 1445 649 48 0 0 chr1 112817652 112817735 -84377697 + BC1_Mm scRNA scRNA 2 84 -68 4 1445 873 221 36 36 chr1 112818331 112818556 -84376876 - Lx9 LINE L1 -716 6928 6704 4 1445 1462 252 37 71 chr1 112818546 112819054 -84376378 + Lx9 LINE L1 6942 7432 -212 4 1445 251 292 88 44 chr1 112819054 112819190 -84376242 - L1MC4a LINE L1 -427 7455 7314 4 1445 234 0 0 0 chr1 112819210 112819236 -84376196 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1445 381 22 0 0 chr1 112819478 112819524 -84375908 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1445 230 310 77 65 chr1 112819590 112819745 -84375687 - MLT1C LTR MaLR -113 354 198 4 1445 2348 112 0 16 chr1 112820493 112820866 -84374566 - L1Md_F2 LINE L1 -19 6563 6197 4 1445 24 0 0 0 chr1 112820871 112820895 -84374537 + AT_rich Low_complexity Low_complexity 1 24 0 4 1445 26 30 0 0 chr1 112820981 112821014 -84374418 + AT_rich Low_complexity Low_complexity 1 33 0 4 1445 344 349 7 20 chr1 112821112 112821264 -84374168 + RSINE1 SINE B4 2 151 -14 4 1445 396 88 0 0 chr1 112821269 112821326 -84374106 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1445 450 316 87 48 chr1 112823037 112823243 -84372189 + B3 SINE B2 1 214 -2 4 1445 323 182 0 0 chr1 112824089 112824144 -84371288 - HAL1-3A_ME LINE L1 -830 2028 1974 4 1445 274 186 23 0 chr1 112824148 112824234 -84371198 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1445 1404 53 5 0 chr1 112824887 112825077 -84370355 + L1Md_A LINE L1 6392 6582 0 4 1445 23 0 0 0 chr1 112825077 112825100 -84370332 + AT_rich Low_complexity Low_complexity 1 23 0 4 1445 277 326 29 23 chr1 112825285 112825394 -84370038 + PB1D7 SINE Alu 3 113 -7 4 1445 251 345 16 96 chr1 112825762 112825934 -84369498 + MLT1D LTR MaLR 10 169 -458 4 1445 27 0 0 0 chr1 112827218 112827245 -84368187 + AT_rich Low_complexity Low_complexity 1 27 0 4 1445 3564 75 16 21 chr1 112827276 112827791 -84367641 + L1Md_F2 LINE L1 6069 6580 -2 4 1445 399 246 92 17 chr1 112827807 112827927 -84367505 + L1_Mur3 LINE L1 5496 5624 -256 4 1445 368 61 0 0 chr1 112827935 112827984 -84367448 + Lx2 LINE L1 6724 6772 -225 4 1445 725 149 14 14 chr1 112827989 112828132 -84367300 + Lx LINE L1 6510 6652 -2 4 1445 417 324 103 33 chr1 112830629 112830843 -84364589 - B4A SINE B4 -59 233 5 4 1445 534 330 66 26 chr1 112831525 112831902 -84363530 + Lx9 LINE L1 7098 7489 -155 4 1445 1035 193 36 5 chr1 112832015 112832239 -84363193 + Lx2A1 LINE L1 6773 7003 -5 4 1445 240 136 37 46 chr1 112832343 112832451 -84362981 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 4 1445 21 57 0 0 chr1 112832451 112832486 -84362946 + AT_rich Low_complexity Low_complexity 1 35 0 4 1445 252 0 0 0 chr1 112832499 112832527 -84362905 + (TATG)n Simple_repeat Simple_repeat 1 28 0 4 1445 246 128 0 0 chr1 112832755 112832794 -84362638 + (CCTG)n Simple_repeat Simple_repeat 1 39 0 4 1445 2912 20 42 3 chr1 112834185 112834538 -84360894 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1445 26083 17 1 2 chr1 112834538 112837497 -84357935 - IAPEz-int LTR ERVK 0 6481 3525 4 1445 913 88 24 0 chr1 112837497 112837622 -84357810 - IAPEz-int LTR ERVK -2770 4910 4783 4 1445 1759 123 4 15 chr1 112837617 112837882 -84357550 - IAPEz-int LTR ERVK -5183 2497 2236 4 1445 434 66 0 32 chr1 112837871 112837934 -84357498 - IAPEz-int LTR ERVK -5062 1419 1359 4 1445 3413 78 13 14 chr1 112837934 112838663 -84356769 - IAPEz-int LTR ERVK -5819 662 8 4 1445 2912 20 42 3 chr1 112838663 112839016 -84356416 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1445 250 342 51 0 chr1 112839041 112839163 -84356269 - B1_Mur1 SINE Alu -9 140 11 4 1445 17484 85 2 1 chr1 112839558 112842564 -84352868 - L1Md_F2 LINE L1 -12 6570 3564 4 1445 515 355 9 65 chr1 112842585 112842802 -84352630 - B3 SINE B2 -10 206 2 4 1445 252 0 0 0 chr1 112843233 112843261 -84352171 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1445 198 0 0 0 chr1 112843261 112843282 -84352150 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1445 27 73 0 0 chr1 112843778 112843833 -84351599 + AT_rich Low_complexity Low_complexity 1 55 0 4 1445 319 181 10 69 chr1 112844091 112844192 -84351240 - Lx3C LINE L1 -2 6974 6880 4 1445 5102 133 24 27 chr1 112844207 112845131 -84350301 - L1_Mur1 LINE L1 -724 5162 4242 4 1445 24 0 0 0 chr1 112845221 112845245 -84350187 + AT_rich Low_complexity Low_complexity 1 24 0 4 1445 34 55 0 0 chr1 112845538 112845593 -84349839 + AT_rich Low_complexity Low_complexity 1 55 0 4 1445 656 191 96 0 chr1 112846102 112846238 -84349194 - B1_Mur4 SINE Alu -1 149 1 4 1445 21 36 0 0 chr1 112846341 112846369 -84349063 + AT_rich Low_complexity Low_complexity 1 28 0 4 1445 22 0 0 0 chr1 112846426 112846448 -84348984 + AT_rich Low_complexity Low_complexity 1 22 0 4 1445 230 324 146 80 chr1 112846571 112846722 -84348710 - RSINE1 SINE B4 0 165 5 4 1445 369 321 65 14 chr1 112846888 112847027 -84348405 + ID_B1 SINE B4 28 173 -51 4 1445 186 220 0 0 chr1 112847080 112847139 -84348293 + GA-rich Low_complexity Low_complexity 2 60 0 4 1445 22 80 0 0 chr1 112847611 112847661 -84347771 + AT_rich Low_complexity Low_complexity 1 50 0 4 1445 2898 170 14 30 chr1 112848187 112848757 -84346675 + RLTR31_Mm LTR ERVK 1 561 0 4 1445 24 32 0 0 chr1 112848876 112848907 -84346525 + AT_rich Low_complexity Low_complexity 1 31 0 4 1445 476 378 43 5 chr1 112848909 112849095 -84346337 + B3 SINE B2 5 197 -19 4 1445 6758 121 37 19 chr1 112849293 112850437 -84344995 + Lx3A LINE L1 5816 6979 -2 4 1445 25 31 0 0 chr1 112851886 112851918 -84343514 + AT_rich Low_complexity Low_complexity 1 32 0 4 1445 26 30 0 0 chr1 112851934 112851967 -84343465 + AT_rich Low_complexity Low_complexity 1 33 0 4 1445 3998 81 0 9 chr1 112852031 112852576 -84342856 + L1Md_F2 LINE L1 6040 6579 -3 4 1445 405 0 0 0 chr1 112852921 112852966 -84342466 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1446 32 57 0 0 chr1 112853112 112853165 -84342267 + AT_rich Low_complexity Low_complexity 1 53 0 4 1446 1971 185 182 15 chr1 112853517 112853994 -84341438 + RLTR31B_Mm LTR ERVK 1 557 0 4 1446 21 82 0 0 chr1 112854924 112854973 -84340459 + AT_rich Low_complexity Low_complexity 1 49 0 4 1446 1505 129 28 8 chr1 112855340 112855589 -84339843 + Lx LINE L1 6399 6652 -2 4 1446 299 313 84 123 chr1 112856323 112856607 -84338825 - MLT1D LTR MaLR -52 453 181 4 1446 359 302 62 40 chr1 112856688 112856912 -84338520 + L1M4 LINE L1 5131 5359 -787 4 1446 805 213 162 42 chr1 112856944 112857160 -84338272 + Lx4B LINE L1 6810 7051 -7 4 1446 551 290 0 0 chr1 112857405 112857550 -84337882 - B1_Mur2 SINE Alu -1 148 4 4 1446 636 111 0 0 chr1 112857652 112857769 -84337663 + (GA)n Simple_repeat Simple_repeat 1 117 0 4 1446 1903 277 90 103 chr1 112857858 112858821 -84336611 - Lx6 LINE L1 -6 7454 6504 4 1446 22 35 0 0 chr1 112859385 112859414 -84336018 + AT_rich Low_complexity Low_complexity 1 29 0 4 1446 279 340 0 0 chr1 112859736 112859833 -84335599 + PB1D10 SINE Alu 2 98 -19 4 1446 477 0 0 0 chr1 112860016 112860069 -84335363 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1446 554 157 0 7 chr1 112860513 112860654 -84334778 + GA-rich Low_complexity Low_complexity 2 141 0 5 1446 217 0 61 0 chr1 112861215 112861248 -84334184 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1446 21 71 0 0 chr1 112862035 112862077 -84333355 + AT_rich Low_complexity Low_complexity 1 42 0 5 1446 21 36 0 0 chr1 112862108 112862136 -84333296 + AT_rich Low_complexity Low_complexity 1 28 0 5 1446 280 119 34 0 chr1 112862350 112862409 -84333023 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1446 286 217 42 32 chr1 112862422 112862517 -84332915 + Lx8 LINE L1 7371 7466 -7 5 1446 234 62 0 0 chr1 112862580 112862612 -84332820 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1446 369 0 0 0 chr1 112862949 112862990 -84332442 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1446 368 246 43 17 chr1 112863584 112863700 -84331732 - Lx2B LINE L1 -5 6995 6877 5 1446 4010 125 52 2 chr1 112863914 112864549 -84330883 + Lx LINE L1 5988 6654 0 5 1446 307 406 69 17 chr1 112864574 112864807 -84330625 + B4A SINE B4 46 290 -2 5 1446 280 252 93 47 chr1 112864912 112864952 -84330480 + Lx7 LINE L1 6704 6741 -955 5 1446 534 31 0 0 chr1 112864952 112865016 -84330416 + (CTA)n Simple_repeat Simple_repeat 1 64 0 5 1446 280 252 93 47 chr1 112865016 112865104 -84330328 + Lx7 LINE L1 6742 6838 -858 5 1446 765 337 34 43 chr1 112865134 112865574 -84329858 + Lx8 LINE L1 6849 7284 -189 5 1446 4479 178 81 34 chr1 112865808 112866433 -84328999 + RLTR25A LTR ERVK 12 696 -407 5 1446 293 0 27 0 chr1 112866433 112866470 -84328962 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1446 4479 178 81 34 chr1 112866470 112866519 -84328913 + RLTR25A LTR ERVK 697 746 -357 5 1446 1551 53 0 14 chr1 112866519 112866728 -84328704 - L1Md_F2 LINE L1 -13 6569 6364 5 1446 4479 178 81 34 chr1 112866728 112866866 -84328566 + RLTR25A LTR ERVK 747 884 -219 5 1446 897 44 0 0 chr1 112866866 112866980 -84328452 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 1446 4479 178 81 34 chr1 112866980 112867200 -84328232 + RLTR25A LTR ERVK 885 1094 -9 5 1446 1025 274 13 94 chr1 112867316 112867710 -84327722 - Lx6 LINE L1 -4 7456 7095 5 1446 1143 219 53 56 chr1 112867978 112868317 -84327115 + Lx4B LINE L1 5993 6330 -728 5 1446 311 250 76 9 chr1 112868317 112868362 -84327070 - RLTR20B3 LTR ERVK -420 157 106 5 1446 822 265 28 39 chr1 112868362 112868617 -84326815 - MTD LTR MaLR -3 416 165 5 1446 2290 254 45 55 chr1 112868737 112869445 -84325987 - Lx6 LINE L1 -138 7558 6600 5 1446 620 256 21 43 chr1 112869443 112869631 -84325801 - Lx9 LINE L1 -187 7457 7274 5 1446 368 290 61 0 chr1 112869650 112869781 -84325651 + Lx7 LINE L1 6637 6775 -921 5 1446 606 306 116 12 chr1 112869766 112870017 -84325415 + Lx7 LINE L1 7044 7320 -376 5 1446 210 37 0 0 chr1 112870097 112870124 -84325308 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1446 432 0 0 0 chr1 112870174 112870222 -84325210 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1446 1142 69 0 0 chr1 112870222 112870366 -84325066 - B1_Mus2 SINE Alu -2 145 2 5 1446 465 19 0 0 chr1 112870538 112870592 -84324840 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 5 1446 461 291 0 0 chr1 112870653 112870770 -84324662 - Lx7 LINE L1 -376 7320 7204 5 1446 234 0 0 0 chr1 112870882 112870908 -84324524 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1446 368 271 98 34 chr1 112871706 112871965 -84323467 + RLTR16 LTR ERVK 24 298 -207 5 1446 257 37 54 36 chr1 112872194 112872250 -84323182 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 5 1446 328 338 156 24 chr1 112872292 112872838 -84322594 + L1M2 LINE L1 4769 5386 -757 5 1446 837 41 24 8 chr1 112873654 112873777 -84321655 - L1Md_F3 LINE L1 -3 6581 6457 5 1446 960 62 0 0 chr1 112874129 112874257 -84321175 + (TC)n Simple_repeat Simple_repeat 2 129 0 5 1446 36 62 0 0 chr1 112874572 112874636 -84320796 + AT_rich Low_complexity Low_complexity 1 64 0 5 1446 28 29 0 0 chr1 112874947 112874982 -84320450 + AT_rich Low_complexity Low_complexity 1 35 0 5 1446 23 0 0 0 chr1 112875055 112875078 -84320354 + AT_rich Low_complexity Low_complexity 1 23 0 5 1446 261 0 0 0 chr1 112875437 112875466 -84319966 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5 1446 258 32 0 0 chr1 112876740 112876771 -84318661 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1446 24 53 0 0 chr1 112876943 112876981 -84318451 + AT_rich Low_complexity Low_complexity 1 38 0 5 1446 332 189 124 21 chr1 112876993 112877090 -84318342 - RLTR23 LTR ERV1 0 430 324 5 1446 366 74 0 0 chr1 112877976 112878030 -84317402 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1446 539 342 47 22 chr1 112878477 112879027 -84316405 - L1_Mur3 LINE L1 -449 5431 4868 5 1446 427 343 67 29 chr1 112879081 112879291 -84316141 + B4 SINE B4 1 218 -74 5 1446 219 36 0 0 chr1 112879362 112879390 -84316042 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1446 417 310 78 42 chr1 112879475 112879791 -84315641 - L1M2 LINE L1 -1347 4796 4466 5 1446 1155 159 5 0 chr1 112879791 112879980 -84315452 + B2_Mm1t SINE B2 2 191 -2 5 1446 417 310 78 42 chr1 112879980 112880023 -84315409 - L1M2 LINE L1 -1678 4465 4424 5 1446 1438 160 42 21 chr1 112880702 112880989 -84314443 + Lx3A LINE L1 6674 6966 -15 5 1446 471 35 0 0 chr1 112880990 112881047 -84314385 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1446 22 0 0 0 chr1 112881351 112881373 -84314059 + AT_rich Low_complexity Low_complexity 1 22 0 5 1446 4937 56 0 3 chr1 112881715 112882344 -84313088 + L1Md_F2 LINE L1 5954 6580 -2 5 1446 1049 320 91 24 chr1 112883239 112883700 -84311732 - Lx8 LINE L1 -217 7256 6765 5 1446 628 295 5 40 chr1 112883739 112883937 -84311495 - B3A SINE B2 -6 192 2 5 1446 533 292 20 14 chr1 112883941 112884087 -84311345 - ID_B1 SINE B4 -72 152 6 5 1446 44 56 0 0 chr1 112884251 112884323 -84311109 + AT_rich Low_complexity Low_complexity 1 72 0 5 1446 762 325 66 13 chr1 112884503 112884821 -84310611 - Lx8 LINE L1 -159 7314 6980 5 1446 2540 206 37 36 chr1 112884829 112885574 -84309858 - MYSERV16_I-int LTR ERVK -1538 788 1 5 1446 291 330 39 10 chr1 112886775 112886879 -84308553 - RLTR20B3 LTR ERVK 0 563 457 5 1446 1222 278 41 30 chr1 112886888 112887364 -84308068 - RLTR20B3 LTR ERVK -43 498 54 5 1446 244 344 85 79 chr1 112887448 112887612 -84307820 + RMER20B LTR ERVK 428 592 -35 5 1446 200 163 41 0 chr1 112887613 112887662 -84307770 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 5 1446 333 91 53 35 chr1 112887695 112887809 -84307623 + A-rich Low_complexity Low_complexity 2 117 0 5 1446 242 29 0 28 chr1 112888040 112888076 -84307356 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1446 398 146 48 12 chr1 112888163 112888246 -84307186 + RLTR42-int LTR ERVK 2040 2125 -3397 5 1446 273 57 0 0 chr1 112888339 112888374 -84307058 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1446 656 171 84 11 chr1 112888427 112888575 -84306857 + RLTR18 LTR ERVK 318 568 -48 5 1446 266 355 7 35 chr1 112888819 112888962 -84306470 - Lx7 LINE L1 -639 7057 6919 5 1446 35 63 0 0 chr1 112889867 112889930 -84305502 + AT_rich Low_complexity Low_complexity 1 63 0 5 1446 35739 71 1 13 chr1 112890268 112896411 -84299021 - L1Md_F2 LINE L1 -8 6574 511 5 1446 3408 72 101 52 chr1 112897380 112897937 -84297495 - RLTR6_Mm LTR ERV1 -70 584 1 5 1446 1522 280 29 35 chr1 112898355 112898847 -84296585 + Lx6 LINE L1 6968 7456 -4 5 1446 433 351 56 22 chr1 112899000 112899178 -84296254 + ID_B1 SINE B4 12 195 -29 5 1446 915 152 11 6 chr1 112899257 112899436 -84295996 + GA-rich Low_complexity Low_complexity 1 180 0 5 1446 216 0 0 0 chr1 112899438 112899462 -84295970 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 5 1446 2155 314 54 93 chr1 112899489 112900098 -84295334 + Lx5 LINE L1 5931 6460 -590 5 1446 4182 60 25 7 chr1 112900098 112900654 -84294778 - L1Md_F2 LINE L1 -3 6579 6014 5 1446 2155 314 54 93 chr1 112900654 112901191 -84294241 + Lx5 LINE L1 6461 7032 -18 5 1446 3882 198 47 43 chr1 112901304 112902171 -84293261 - RMER13B LTR ERVK -37 871 1 5 1446 266 345 53 0 chr1 112902942 112903055 -84292377 + RMER12 LTR ERVK 734 852 -470 5 1446 35 24 0 0 chr1 112903697 112903739 -84291693 + AT_rich Low_complexity Low_complexity 1 42 0 5 1446 1105 148 22 6 chr1 112904855 112905038 -84290394 - B2_Mm2 SINE B2 -4 191 6 5 1446 221 179 0 0 chr1 112905037 112905076 -84290356 - B3 SINE B2 -174 42 4 5 1446 240 35 0 0 chr1 112906429 112906458 -84288974 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1446 4020 180 40 42 chr1 112906689 112907638 -84287794 - L1_Mur2 LINE L1 -1173 4704 3758 5 1446 714 214 24 38 chr1 112907614 112907823 -84287609 - L1VL4 LINE L1 -482 3077 2872 5 1446 2312 207 7 12 chr1 112907802 112908592 -84286840 - L1VL4 LINE L1 -2155 1404 615 5 1446 479 355 126 29 chr1 112909502 112910094 -84285338 + MLT2B5 LTR ERVL 9 532 -22 5 1446 22 0 0 0 chr1 112910184 112910206 -84285226 + AT_rich Low_complexity Low_complexity 1 22 0 5 1446 423 270 75 71 chr1 112910283 112910578 -84284854 + Lx9 LINE L1 7349 7644 0 5 1446 263 369 0 0 chr1 112911236 112911301 -84284131 - RSINE1 SINE B4 -14 151 87 5 1446 299 325 49 24 chr1 112911484 112911607 -84283825 - RMER15 LTR ERVL -154 421 296 5 1446 219 205 60 0 chr1 112913711 112913794 -84281638 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1446 471 326 34 58 chr1 112913986 112914194 -84281238 - B3A SINE B2 0 216 14 5 1446 1796 174 45 3 chr1 112915097 112915431 -84280001 + ORR1B1 LTR MaLR 47 394 0 5 1446 392 360 6 12 chr1 112915537 112915700 -84279732 - Lx8 LINE L1 -224 7249 7088 5 1446 243 200 82 41 chr1 112915700 112915773 -84279659 - ORR1E LTR MaLR -7 352 277 5 1446 239 0 32 0 chr1 112916039 112916070 -84279362 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1446 318 340 148 17 chr1 112916137 112916373 -84279059 - MTD LTR MaLR -85 334 68 5 1446 357 24 0 0 chr1 112916755 112916797 -84278635 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1446 185 0 40 0 chr1 112917878 112917903 -84277529 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 5 1446 1560 242 62 55 chr1 112917916 112918518 -84276914 - Lx7 LINE L1 -3 7693 7088 6 1446 14556 124 27 12 chr1 112918510 112920807 -84274625 - L1VL4 LINE L1 -2308 3835 1496 6 1446 432 0 0 0 chr1 112920807 112920855 -84274577 + (TTA)n Simple_repeat Simple_repeat 1 48 0 6 1446 14556 117 14 5 chr1 112920855 112921421 -84274011 - L1VL4 LINE L1 -2419 1495 915 6 1446 732 79 8 38 chr1 112921421 112921553 -84273879 - L1Md_F2 LINE L1 -1 6581 6454 6 1446 2781 61 8 0 chr1 112921553 112921912 -84273520 + L1Md_F2 LINE L1 5721 6082 -500 6 1446 2834 171 55 18 chr1 112921904 112922447 -84272985 - L1VL2 LINE L1 -5709 626 64 6 1446 14069 69 1 1 chr1 112922472 112925059 -84270373 - L1Md_F2 LINE L1 -1 6581 3995 6 1446 1082 182 88 13 chr1 112925050 112925278 -84270154 - L1Md_F LINE L1 -5898 621 377 6 1446 1595 147 4 8 chr1 112925269 112925536 -84269896 - L1VL1 LINE L1 -6156 266 1 6 1446 321 164 0 0 chr1 112925568 112925623 -84269809 + L1_Mur3 LINE L1 4571 4625 -1255 6 1446 804 65 0 0 chr1 112925635 112925742 -84269690 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 6 1446 451 254 104 0 chr1 112925795 112925929 -84269503 - B1_Mur2 SINE Alu -1 148 1 6 1446 929 251 44 4 chr1 112925934 112926206 -84269226 + L1_Mur3 LINE L1 4637 4919 -961 6 1446 21 0 0 0 chr1 112926762 112926783 -84268649 + AT_rich Low_complexity Low_complexity 1 21 0 6 1446 400 340 36 31 chr1 112927322 112927516 -84267916 + Lx9 LINE L1 7126 7320 -324 6 1446 1203 119 0 6 chr1 112927522 112927700 -84267732 + B2_Mm2 SINE B2 19 195 0 6 1446 51 31 0 0 chr1 112927764 112927829 -84267603 + AT_rich Low_complexity Low_complexity 1 65 0 6 1446 6650 196 29 50 chr1 112928433 112930022 -84265410 + L1VL4 LINE L1 548 2089 -3797 6 1446 246 32 0 0 chr1 112930022 112930053 -84265379 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1446 6650 169 39 49 chr1 112930053 112930682 -84264750 + L1VL4 LINE L1 2090 2719 -3167 6 1446 1165 208 17 0 chr1 112930674 112930915 -84264517 + L1VL4 LINE L1 4109 4353 -1524 6 1446 968 319 48 52 chr1 112930917 112931098 -84264334 - Lx7 LINE L1 -1037 6659 6493 6 1446 4750 73 23 3 chr1 112931098 112931754 -84263678 + L1_Mus2 LINE L1 5898 6566 0 6 1446 968 319 48 52 chr1 112931754 112932052 -84263380 - Lx7 LINE L1 -1204 6492 6182 6 1446 1067 274 96 36 chr1 112932058 112932558 -84262874 + Lx7 LINE L1 5640 6169 -1527 6 1446 255 61 0 0 chr1 112932640 112932673 -84262759 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6 1446 25 0 0 0 chr1 112933204 112933229 -84262203 + AT_rich Low_complexity Low_complexity 1 25 0 6 1446 31 26 0 0 chr1 112933345 112933383 -84262049 + AT_rich Low_complexity Low_complexity 1 38 0 6 1446 1539 17 0 0 chr1 112933569 112933747 -84261685 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 6 1446 782 92 0 16 chr1 112933748 112933870 -84261562 + (CCCCCT)n Simple_repeat Simple_repeat 1 120 0 6 1446 1622 246 134 2 chr1 112933870 112934399 -84261033 - Lx9 LINE L1 -50 7594 6996 6 1446 22 0 0 0 chr1 112934399 112934421 -84261011 + AT_rich Low_complexity Low_complexity 1 22 0 6 1446 489 34 0 0 chr1 112936413 112936472 -84258960 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1446 432 77 38 19 chr1 112937393 112937499 -84257933 + (CAAAA)n Simple_repeat Simple_repeat 5 112 0 6 1446 5407 101 4 5 chr1 112937797 112938573 -84256859 + L1_Mus3 LINE L1 5864 6638 0 6 1446 214 186 0 0 chr1 112938605 112938648 -84256784 + A-rich Low_complexity Low_complexity 1 43 0 6 1446 245 163 32 11 chr1 112938952 112939045 -84256387 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 6 1446 1577 196 13 86 chr1 112939088 112939473 -84255959 + ORR1B1 LTR MaLR 30 386 -8 6 1446 3120 68 19 2 chr1 112939516 112939977 -84255455 - L1_Mus1 LINE L1 0 6567 6143 6 1446 261 0 0 0 chr1 112940060 112940089 -84255343 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1446 1322 90 0 0 chr1 112940259 112940447 -84254985 - L1_Mus2 LINE L1 -1 6565 6378 6 1446 258 330 0 25 chr1 112940560 112940678 -84254754 + CT-rich Low_complexity Low_complexity 2 116 0 6 1446 260 158 0 0 chr1 112941502 112941540 -84253892 - PB1D9 SINE Alu -82 38 1 6 1446 2349 132 4 88 chr1 112941543 112942000 -84253432 - Lx2A LINE L1 -2 7006 6588 6 1446 10373 121 24 8 chr1 112942006 112944515 -84250917 - L1_Mur1 LINE L1 -3111 2775 218 6 1446 211 85 21 21 chr1 112944570 112944618 -84250814 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1446 6448 129 3 78 chr1 112944619 112944702 -84250730 + L1VL2 LINE L1 3 81 -6254 6 1446 5089 156 135 15 chr1 112944702 112945697 -84249735 + RLTR13D3 LTR ERVK 1 1114 0 6 1446 13129 108 12 30 chr1 112945697 112948672 -84246760 + L1VL2 LINE L1 82 2989 -626 6 1446 21 57 0 0 chr1 112948814 112948849 -84246583 + AT_rich Low_complexity Low_complexity 1 35 0 6 1446 5181 180 32 22 chr1 112949270 112950415 -84245017 + L1_Mur2 LINE L1 3090 4246 -1631 6 1446 841 206 6 0 chr1 112950412 112950572 -84244860 + Lx5 LINE L1 6246 6406 -644 6 1446 2561 222 65 78 chr1 112950575 112951263 -84244169 - RMER19B LTR ERVK -223 679 1 6 1446 1441 213 146 49 chr1 112951271 112951839 -84243593 - L1_Rod LINE L1 -3737 2110 1488 6 1446 2464 245 12 14 chr1 112951856 112952414 -84243018 + Lx5 LINE L1 6432 6988 -62 6 1446 774 206 0 0 chr1 112952565 112952691 -84242741 + B3 SINE B2 4 129 -87 6 1446 32 0 0 0 chr1 112953288 112953320 -84242112 + AT_rich Low_complexity Low_complexity 1 32 0 6 1446 3179 71 5 0 chr1 112953320 112953741 -84241691 - L1_Mus1 LINE L1 -518 6049 5627 6 1446 3725 88 23 4 chr1 112953741 112954255 -84241177 + L1_Mus1 LINE L1 6044 6567 0 6 1446 21 0 0 0 chr1 112954255 112954276 -84241156 + AT_rich Low_complexity Low_complexity 1 21 0 6 1446 483 141 0 0 chr1 112956491 112956583 -84238849 + (T)n Simple_repeat Simple_repeat 1 92 0 6 1446 1158 68 0 0 chr1 112956583 112956730 -84238702 - B1_Mus2 SINE Alu 0 147 1 6 1446 425 321 80 68 chr1 112956848 112957159 -84238273 + MLT1A0 LTR MaLR 22 336 -29 6 1446 271 329 29 6 chr1 112957635 112957806 -84237626 + (TA)n Simple_repeat Simple_repeat 2 176 0 6 1446 25 0 0 0 chr1 112958417 112958442 -84236990 + AT_rich Low_complexity Low_complexity 1 25 0 6 1446 35 41 0 0 chr1 112959099 112959148 -84236284 + AT_rich Low_complexity Low_complexity 1 49 0 6 1446 1010 304 16 0 chr1 112959151 112959463 -84235969 + MuRRS4-int LTR ERV1 3698 4014 -1049 6 1446 228 243 7 56 chr1 112960198 112960342 -84235090 + T-rich Low_complexity Low_complexity 2 138 0 6 1446 3999 112 27 10 chr1 112961017 112962173 -84233259 - Lx3_Mus LINE L1 -275 6734 6152 6 1446 2328 278 58 33 chr1 112962162 112962712 -84232720 - Lx6 LINE L1 -1022 6438 5874 6 1446 2301 190 56 2 chr1 112962712 112963191 -84232241 + RLTR19C LTR ERVK 2 506 0 6 1446 2328 278 58 33 chr1 112963191 112963276 -84232156 - Lx6 LINE L1 -1587 5873 5791 6 1446 396 0 0 0 chr1 112963276 112963320 -84232112 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1446 2328 263 37 7 chr1 112963320 112963689 -84231743 - Lx6 LINE L1 -89 5791 5409 6 1446 564 125 29 0 chr1 112963691 112963795 -84231637 - L1Md_F3 LINE L1 -1 6583 6477 6 1446 3962 70 28 16 chr1 112963795 112964359 -84231073 - L1_Mm LINE L1 -1065 4818 4248 6 1446 1872 195 30 42 chr1 112964357 112964856 -84230576 - Lx6 LINE L1 -479 5401 4909 6 1446 25 0 0 0 chr1 112965275 112965300 -84230132 + AT_rich Low_complexity Low_complexity 1 25 0 6 1446 397 336 72 0 chr1 112965446 112965571 -84229861 + B1F SINE Alu 1 134 -15 6 1446 266 0 29 0 chr1 112965582 112965616 -84229816 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1446 21 0 0 0 chr1 112966539 112966560 -84228872 + AT_rich Low_complexity Low_complexity 1 21 0 6 1446 1513 179 70 38 chr1 112967692 112968035 -84227397 - RMER2 LTR ERV1 -213 354 1 6 1446 364 301 48 27 chr1 112968716 112968863 -84226569 - MuRRS4-int LTR ERV1 -1037 4026 3877 6 1446 268 388 101 0 chr1 112969044 112969302 -84226130 - RLTR4_MM-int LTR ERV1 -3228 4373 4090 6 1446 309 51 0 0 chr1 112970207 112970246 -84225186 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1446 559 104 10 20 chr1 112970336 112970434 -84224998 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 6 1446 253 182 0 0 chr1 112970747 112970791 -84224641 - MuLV-int LTR ERV1 -6296 1310 1267 6 1446 272 313 12 0 chr1 112971683 112971785 -84223647 + CT-rich Low_complexity Low_complexity 1 103 0 6 1446 473 336 21 0 chr1 112971790 112971930 -84223502 - B1F SINE Alu -6 143 1 6 1446 1513 196 15 18 chr1 112972040 112972217 -84223215 + RMER6D LTR ERVK 1 177 -543 6 1446 506 29 15 0 chr1 112972217 112972285 -84223147 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1446 1513 196 15 18 chr1 112972285 112972444 -84222988 + RMER6D LTR ERVK 178 336 -384 6 1446 279 0 0 0 chr1 112972444 112972475 -84222957 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1446 969 34 0 0 chr1 112972475 112972591 -84222841 + (GA)n Simple_repeat Simple_repeat 2 118 0 6 1446 1456 254 46 25 chr1 112972591 112972986 -84222446 + MTD LTR MaLR 17 419 0 6 1446 1021 268 22 22 chr1 112973093 112973168 -84222264 + ORR1D1 LTR MaLR 5 81 -293 6 1446 776 19 0 0 chr1 112973168 112973274 -84222158 + L1Md_T LINE L1 6475 6580 -2 6 1446 1021 268 22 22 chr1 112973274 112973469 -84221963 + ORR1D1 LTR MaLR 82 275 -99 6 1446 324 0 0 0 chr1 112973474 112973510 -84221922 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1446 1099 89 0 0 chr1 112973510 112973656 -84221776 - B1_Mm SINE Alu 0 147 2 6 1446 3708 169 13 16 chr1 112973991 112974671 -84220761 - RLTR33 LTR ERVK 0 678 1 6 1446 488 343 10 0 chr1 112975109 112975313 -84220119 - B3 SINE B2 -10 206 1 6 1446 25 75 0 0 chr1 112975369 112975422 -84220010 + AT_rich Low_complexity Low_complexity 1 53 0 6 1446 22 35 0 0 chr1 112975642 112975671 -84219761 + AT_rich Low_complexity Low_complexity 1 29 0 6 1446 677 320 65 78 chr1 112975706 112976089 -84219343 - MTE2a LTR MaLR 0 379 2 6 1446 252 0 0 0 chr1 112976099 112976127 -84219305 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1446 332 350 8 48 chr1 112976150 112976276 -84219156 - RSINE1 SINE B4 -37 128 8 6 1446 264 289 135 43 chr1 112976855 112976958 -84218474 + RSINE1 SINE B4 12 120 -45 6 1446 333 0 0 0 chr1 112976958 112976995 -84218437 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1446 264 289 135 43 chr1 112976995 112977032 -84218400 + RSINE1 SINE B4 121 165 0 6 1446 258 250 0 0 chr1 112977035 112977171 -84218261 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 1446 34 0 0 0 chr1 112977188 112977222 -84218210 + AT_rich Low_complexity Low_complexity 1 34 0 6 1446 180 0 0 0 chr1 112978454 112978474 -84216958 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1446 5452 138 10 5 chr1 112978546 112979417 -84216015 - Lx2 LINE L1 -326 6671 5796 6 1446 1833 155 10 3 chr1 112979417 112979728 -84215704 + Lx2 LINE L1 6685 6997 0 6 1446 37 0 0 0 chr1 112980271 112980308 -84215124 + AT_rich Low_complexity Low_complexity 1 37 0 7 1446 24 53 0 0 chr1 112980552 112980590 -84214842 + AT_rich Low_complexity Low_complexity 1 38 0 7 1446 421 350 14 7 chr1 112980819 112980960 -84214472 - ID_B1 SINE B4 -1 223 82 7 1446 274 300 57 57 chr1 112980960 112980976 -84214456 + YREP_Mm Unknown Unknown 182 338 -1474 7 1446 344 205 0 137 chr1 112981766 112981868 -84213564 + B1_Mur1 SINE Alu 62 149 0 7 1446 835 211 58 45 chr1 112982051 112982294 -84213138 - RMER1A Other Other -7 1023 778 7 1446 2292 263 40 23 chr1 112982572 112983476 -84211956 + Lx9 LINE L1 5080 6031 -1613 7 1446 3849 263 69 25 chr1 112983472 112983631 -84211801 + Lx9 LINE L1 6342 6500 -1144 7 1446 916 53 76 0 chr1 112983631 112983763 -84211669 - L1Md_F2 LINE L1 -2 6580 6439 7 1446 3849 263 69 25 chr1 112983763 112983932 -84211500 + Lx9 LINE L1 6501 6668 -976 7 180 1931 139 12 44 chr1 112983932 112984270 -84211162 + ORR1A2 LTR MaLR 1 327 0 7 1447 3849 263 69 25 chr1 112984270 112984531 -84210901 + Lx9 LINE L1 6669 6925 -719 7 1447 2232 41 113 0 chr1 112984531 112984823 -84210609 - IAPLTR2b LTR ERVK -2 325 1 7 1447 3849 263 69 25 chr1 112984823 112985194 -84210238 + Lx9 LINE L1 6926 7310 -334 7 1447 279 0 0 0 chr1 112985194 112985225 -84210207 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1447 3849 263 69 25 chr1 112985225 112985509 -84209923 + Lx9 LINE L1 7311 7644 0 7 1447 551 313 33 6 chr1 112985639 112985822 -84209610 + B3 SINE B2 12 199 -17 7 1447 2157 260 61 12 chr1 112985827 112986403 -84209029 - RMER1B Other Other -14 1052 449 7 1447 401 0 20 0 chr1 112986411 112986460 -84208972 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1447 27 29 0 0 chr1 112986478 112986512 -84208920 + AT_rich Low_complexity Low_complexity 1 34 0 7 1447 40 49 0 0 chr1 112986872 112986933 -84208499 + AT_rich Low_complexity Low_complexity 1 61 0 7 1447 583 267 93 7 chr1 112987117 112987396 -84208036 - Lx9 LINE L1 0 7644 7342 7 1447 1010 183 15 107 chr1 112987411 112987674 -84207758 + RMER19C LTR ERVK 3 241 -370 7 1447 5651 124 20 1 chr1 112987676 112988586 -84206846 - L1_Mur1 LINE L1 -559 5327 4401 7 1447 8273 136 21 14 chr1 112988584 112990635 -84204797 - L1_Mur1 LINE L1 -3229 2657 592 7 1447 551 276 95 60 chr1 112990638 112990985 -84204447 - RLTR10D LTR ERVK 0 359 1 7 1447 1613 161 3 18 chr1 112990985 112991269 -84204163 - IAP-d-int LTR ERVK 0 6542 6263 7 1447 8143 290 23 18 chr1 112991337 112994236 -84201196 - IAP-d-int LTR ERVK -459 6083 3170 7 1447 425 221 90 0 chr1 112994249 112994371 -84201061 - IAP-d-int LTR ERVK -6388 154 22 7 1447 753 283 54 49 chr1 112994396 112994416 -84201016 - L1_Mur1 LINE L1 -6369 615 596 7 1447 564 291 53 42 chr1 112994416 112994771 -84200661 - RLTR10D LTR ERVK 0 359 1 7 1447 755 283 54 49 chr1 112994771 112995155 -84200277 - L1_Mur1 LINE L1 -6389 595 4 7 1447 493 321 8 0 chr1 112995201 112995332 -84200100 + RLTR18B LTR ERVK 367 498 -14 7 1447 442 344 57 46 chr1 112995725 112996008 -84199424 - B4A SINE B4 0 292 7 7 1447 25 51 0 0 chr1 112996185 112996224 -84199208 + AT_rich Low_complexity Low_complexity 1 39 0 7 1447 755 88 9 0 chr1 112996527 112996640 -84198792 + (TTTTC)n Simple_repeat Simple_repeat 2 115 0 7 1447 462 82 0 0 chr1 112996762 112996823 -84198609 + B1_Mus2 SINE Alu 6 66 -81 7 1447 225 0 0 0 chr1 112997325 112997350 -84198082 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1447 19940 65 3 2 chr1 112997350 113000000 -84195432 + L1_Mm LINE L1 2351 5003 -880 7 1447 4793 43 0 0 chr1 113000000 113000582 -84194850 + L1Md_F2 LINE L1 5004 5585 -298 1 1447 7865 53 3 6 chr1 113000583 113001578 -84193854 + L1Md_F2 LINE L1 5587 6578 -4 1 1447 266 96 13 40 chr1 113001582 113001658 -84193774 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 2 1447 6974 174 63 22 chr1 113001659 113003190 -84192242 + L1_Mur1 LINE L1 3485 5079 -807 3 1447 3433 190 64 26 chr1 113003184 113003888 -84191544 + Lx2B LINE L1 6267 6997 -3 4 1447 13364 30 1 0 chr1 113004095 113005683 -84189749 + L1_Mm LINE L1 4159 5747 -136 5 1447 2054 214 43 5 chr1 113006218 113006663 -84188769 - RLTR11A2 LTR ERVK -10 517 56 6 1447 253 210 24 12 chr1 113006735 113006817 -84188615 + A-rich Low_complexity Low_complexity 2 84 0 7 1447 5621 94 16 26 chr1 113008604 113009425 -84186007 + L1_Mus2 LINE L1 5751 6563 -3 8 1447 595 214 247 6 chr1 113009458 113009632 -84185800 - B3 SINE B2 0 216 1 9 1447 200 256 35 0 chr1 113009961 113010047 -84185385 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1447 33 80 0 0 chr1 113010179 113010254 -84185178 + AT_rich Low_complexity Low_complexity 1 75 0 1 1447 245 75 0 24 chr1 113010741 113010782 -84184650 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1447 303 230 65 13 chr1 113011539 113011693 -84183739 + (TAGA)n Simple_repeat Simple_repeat 2 163 0 1 1447 3092 138 85 58 chr1 113012231 113012858 -84182574 + Lx LINE L1 6024 6644 -10 1 1447 268 171 40 67 chr1 113013333 113013483 -84181949 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 1 1447 7251 191 27 21 chr1 113013582 113014538 -84180894 - L1VL4 LINE L1 -986 2573 1600 1 1447 411 21 0 0 chr1 113014538 113014586 -84180846 + (CAT)n Simple_repeat Simple_repeat 2 49 0 1 1447 7251 191 25 20 chr1 113014586 113015414 -84180018 - L1VL4 LINE L1 -1960 1599 780 1 1447 1206 40 0 0 chr1 113015414 113015566 -84179866 + (TG)n Simple_repeat Simple_repeat 2 153 0 1 1447 9211 251 131 55 chr1 113016096 113017882 -84177550 + Lx6 LINE L1 888 2834 -3043 1 1447 363 23 0 0 chr1 113017882 113017926 -84177506 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1447 9211 249 131 63 chr1 113017926 113020496 -84174936 + Lx6 LINE L1 2835 5579 -298 1 1447 1086 140 0 0 chr1 113020496 113020675 -84174757 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1447 9211 290 84 38 chr1 113020675 113021700 -84173732 + Lx6 LINE L1 5580 6879 -581 1 1447 1270 290 22 72 chr1 113021711 113022172 -84173260 + Lx6 LINE L1 6955 7392 -68 1 1447 288 0 0 0 chr1 113022202 113022234 -84173198 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1447 21 36 0 0 chr1 113022429 113022457 -84172975 + AT_rich Low_complexity Low_complexity 1 28 0 2 1447 22 0 0 0 chr1 113022578 113022600 -84172832 + AT_rich Low_complexity Low_complexity 1 22 0 2 1447 1471 235 43 176 chr1 113022719 113023420 -84172012 - RMER19C LTR ERVK 0 611 4 2 1447 2040 254 102 23 chr1 113023420 113024147 -84171285 + Lx7 LINE L1 6913 7696 0 2 1447 28 29 0 0 chr1 113024176 113024211 -84171221 + AT_rich Low_complexity Low_complexity 1 35 0 2 1447 234 0 0 0 chr1 113024688 113024714 -84170718 + (TA)n Simple_repeat Simple_repeat 1 26 0 2 1447 23 78 0 0 chr1 113025015 113025066 -84170366 + AT_rich Low_complexity Low_complexity 1 51 0 2 1447 26 50 0 0 chr1 113025244 113025284 -84170148 + AT_rich Low_complexity Low_complexity 1 40 0 3 1447 342 0 0 0 chr1 113025321 113025359 -84170073 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1447 1492 212 33 0 chr1 113026415 113026721 -84168711 + ORR1A3 LTR MaLR 4 319 -8 3 1447 7631 194 20 55 chr1 113026725 113028583 -84166849 + ORR1A3-int LTR MaLR 1 1792 0 3 1447 1840 176 9 24 chr1 113028583 113028914 -84166518 + ORR1A3 LTR MaLR 1 326 0 3 1447 22 0 0 0 chr1 113029762 113029784 -84165648 + AT_rich Low_complexity Low_complexity 1 22 0 3 1447 841 212 63 15 chr1 113029790 113029996 -84165436 - MTC-int LTR MaLR -1041 217 2 3 1447 884 284 30 49 chr1 113029995 113030299 -84165133 - MTC LTR MaLR 0 421 124 3 1447 1310 253 81 106 chr1 113030245 113030802 -84164630 - RLTR20B2 LTR ERVK -14 546 4 3 1447 391 307 38 45 chr1 113030954 113031111 -84164321 + ORR1E LTR MaLR 204 359 0 3 1447 541 227 9 9 chr1 113031151 113031262 -84164170 - RLTR20B3 LTR ERVK -466 111 1 3 1447 3829 197 44 5 chr1 113031328 113032188 -84163244 - MYSERV16_I-int LTR ERVK -113 2213 1320 3 1447 6594 131 22 1 chr1 113032188 113033358 -84162074 + L1_Mus4 LINE L1 5429 6632 -4 3 1447 5021 146 8 5 chr1 113033358 113034182 -84161250 + Lx LINE L1 5827 6653 -1 4 1447 1935 156 29 8 chr1 113034187 113034562 -84160870 - MYSERV16_I-int LTR ERVK -996 1330 948 3 1447 2677 132 41 84 chr1 113034580 113035092 -84160340 - RLTR1C LTR ERV1 -13 490 1 4 1447 573 77 0 0 chr1 113035092 113035170 -84160262 - RLTR1B-int LTR ERV1 0 3299 3222 4 1447 5196 117 14 9 chr1 113035224 113036044 -84159388 - MMVL30-int LTR ERV1 -67 3631 2878 4 1447 502 250 6 32 chr1 113036244 113036401 -84159031 - MMVL30-int LTR ERV1 -3200 4252 4100 4 1447 5178 140 32 9 chr1 113036445 113037392 -84158040 - MMVL30-int LTR ERV1 -1467 2231 1513 4 1447 322 105 0 0 chr1 113037468 113037525 -84157907 - MMVL30-int LTR ERV1 -2187 1511 1455 4 1447 1192 234 48 95 chr1 113037596 113037875 -84157557 + RLTR20B3 LTR ERVK 218 482 -95 4 1447 495 33 0 0 chr1 113037875 113037936 -84157496 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1447 1192 234 48 95 chr1 113037936 113038034 -84157398 + RLTR20B3 LTR ERVK 483 577 0 4 1447 3391 201 61 20 chr1 113038946 113039780 -84155652 + MYSERV16_I-int LTR ERVK 1 792 -1534 4 1447 510 86 0 0 chr1 113039784 113039865 -84155567 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1447 1517 176 130 23 chr1 113039963 113040509 -84154923 + RLTR1C LTR ERV1 1 605 0 4 1447 1479 220 101 61 chr1 113040511 113041125 -84154307 + MMVL30-int LTR ERV1 2 623 -6933 4 1447 892 168 66 66 chr1 113041312 113041523 -84153909 + MMVL30-int LTR ERV1 572 782 -2517 4 1447 1582 105 147 4 chr1 113041580 113041839 -84153593 + MMVL30-int LTR ERV1 1158 1453 -2245 4 1447 260 181 214 41 chr1 113041926 113042024 -84153408 + RLTR1B-int LTR ERV1 960 1074 -2225 4 1447 509 175 16 78 chr1 113042016 113042208 -84153224 + RLTR1B-int LTR ERV1 1020 1199 -2100 4 1447 745 187 192 6 chr1 113042219 113042396 -84153036 - RLTR20B3 LTR ERVK -367 210 1 4 1447 789 208 70 65 chr1 113042397 113042582 -84152850 - MTC LTR MaLR -235 186 1 5 1447 29 28 0 0 chr1 113042652 113042688 -84152744 + AT_rich Low_complexity Low_complexity 1 36 0 5 1447 1015 361 77 22 chr1 113042873 113043655 -84151777 + Lx8 LINE L1 6454 7278 -195 5 1447 258 289 21 53 chr1 113043590 113043685 -84151747 + RMER1C Other Other 1103 1194 -148 5 1447 24 32 0 0 chr1 113044201 113044232 -84151200 + AT_rich Low_complexity Low_complexity 1 31 0 5 1447 21 0 0 0 chr1 113044517 113044538 -84150894 + AT_rich Low_complexity Low_complexity 1 21 0 5 1447 25 0 0 0 chr1 113045100 113045125 -84150307 + AT_rich Low_complexity Low_complexity 1 25 0 5 1447 330 318 18 0 chr1 113045161 113045271 -84150161 - Lx8 LINE L1 -322 7151 7040 5 1447 369 322 88 7 chr1 113045595 113045742 -84149690 - B4 SINE B4 -76 216 58 5 1447 21 0 0 0 chr1 113045932 113045953 -84149479 + AT_rich Low_complexity Low_complexity 1 21 0 5 1447 279 279 23 0 chr1 113046269 113046355 -84149077 + PB1D10 SINE Alu 22 109 -8 6 1447 4275 261 64 16 chr1 113047512 113049013 -84146419 + Lx7 LINE L1 5538 7117 -579 6 1447 228 156 0 22 chr1 113049005 113049051 -84146381 + Lx7 LINE L1 7361 7405 -291 6 1447 431 310 26 9 chr1 113049123 113049185 -84146247 + Lx7 LINE L1 7439 7504 -192 6 1447 1156 68 0 0 chr1 113049185 113049332 -84146100 - B1_Mus1 SINE Alu 0 148 2 6 1447 431 310 26 9 chr1 113049332 113049497 -84145935 + Lx7 LINE L1 7505 7669 -27 6 1447 223 376 20 10 chr1 113049497 113049599 -84145833 - B1_Mur1 SINE Alu -41 108 6 6 1447 413 19 0 18 chr1 113049716 113049771 -84145661 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 6 1447 276 305 73 48 chr1 113049957 113050081 -84145351 - ORR1E LTR MaLR -168 191 65 6 1447 1210 260 141 29 chr1 113050263 113050711 -84144721 - Lx2B LINE L1 0 7000 6503 6 1447 4063 134 10 21 chr1 113050768 113051446 -84143986 - Lx3_Mus LINE L1 -349 6660 5990 6 1447 3015 123 107 32 chr1 113051450 113052005 -84143427 + Lx3_Mus LINE L1 5343 5922 -1087 6 1447 220 102 12 71 chr1 113052010 113052094 -84143338 + A-rich Low_complexity Low_complexity 2 80 0 6 1447 709 262 28 36 chr1 113052197 113052450 -84142982 - L1_Rod LINE L1 -116 5731 5481 6 1447 279 113 0 0 chr1 113052514 113052567 -84142865 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 7 1447 480 360 79 49 chr1 113052937 113053137 -84142295 - MTD LTR MaLR -96 323 121 7 1447 440 77 0 15 chr1 113053137 113053203 -84142229 + (CAA)n Simple_repeat Simple_repeat 2 66 0 7 1447 480 360 79 49 chr1 113053203 113053268 -84142164 - MTD LTR MaLR -299 120 52 7 1447 238 264 14 14 chr1 113053717 113053790 -84141642 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1447 329 287 28 0 chr1 113054552 113054695 -84140737 + (TA)n Simple_repeat Simple_repeat 2 148 0 7 1447 245 259 3 0 chr1 113055035 113055109 -84140323 + MLT1E3 LTR MaLR 568 622 -2 7 1447 4460 169 9 36 chr1 113055234 113056131 -84139301 - Lx3B LINE L1 0 6973 6101 7 1447 292 387 74 40 chr1 113056504 113056679 -84138753 + B4A SINE B4 108 288 -4 7 1447 1558 174 20 72 chr1 113056948 113057295 -84138137 + ORR1A4 LTR MaLR 1 329 0 7 1447 7946 186 12 6 chr1 113058045 113059851 -84135581 - Lx2B LINE L1 -7 6993 5177 7 1447 9699 204 65 28 chr1 113059845 113062563 -84132869 - Lx2B LINE L1 -2037 3849 1020 7 1447 2960 62 21 5 chr1 113062563 113062952 -84132480 + MTA_Mm LTR MaLR 1 395 -1 8 1447 1993 190 59 19 chr1 113062952 113063014 -84132418 - Lx2B LINE L1 -5638 1019 953 7 1447 180 0 0 0 chr1 113063014 113063034 -84132398 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1447 1993 190 59 19 chr1 113063034 113063131 -84132301 - Lx2B LINE L1 -5705 952 856 7 1447 25 75 0 0 chr1 113063481 113063534 -84131898 + AT_rich Low_complexity Low_complexity 1 53 0 8 1447 366 258 250 29 chr1 113063917 113064089 -84131343 + B3 SINE B2 1 210 -6 8 1447 23 0 0 0 chr1 113064355 113064378 -84131054 + AT_rich Low_complexity Low_complexity 1 23 0 8 1447 596 219 60 72 chr1 113064555 113064663 -84130769 - RMER1A Other Other -1 1029 912 8 1447 324 0 0 0 chr1 113064663 113064699 -84130733 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1447 596 219 60 72 chr1 113064699 113064744 -84130688 - RMER1A Other Other -119 911 875 8 1447 209 83 0 27 chr1 113064744 113064781 -84130651 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8 1447 596 219 60 72 chr1 113064781 113064891 -84130541 - RMER1A Other Other -156 874 769 8 1447 27 0 0 0 chr1 113065013 113065040 -84130392 + AT_rich Low_complexity Low_complexity 1 27 0 8 1447 24 0 0 0 chr1 113065141 113065165 -84130267 + AT_rich Low_complexity Low_complexity 1 24 0 8 1447 297 128 0 0 chr1 113065214 113065261 -84130171 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1447 222 250 0 24 chr1 113065284 113065366 -84130066 + T-rich Low_complexity Low_complexity 3 82 0 9 1447 7375 36 7 0 chr1 113065389 113066281 -84129151 - L1Md_T LINE L1 -1 6581 5684 9 1447 306 306 172 29 chr1 113066286 113066559 -84128873 - L1MC LINE L1 -2915 3231 2920 9 1447 30 27 0 0 chr1 113066622 113066659 -84128773 + AT_rich Low_complexity Low_complexity 1 37 0 9 1447 297 100 0 0 chr1 113066973 113067023 -84128409 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 9 1447 189 0 0 0 chr1 113067124 113067145 -84128287 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 9 1447 4238 97 8 2 chr1 113067148 113067756 -84127676 - L1_Mus2 LINE L1 0 6566 5955 9 1447 1127 219 15 187 chr1 113068238 113068693 -84126739 + RLTR14 LTR ERV1 3 379 -3 9 1447 474 33 0 0 chr1 113069085 113069145 -84126287 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1447 354 91 0 0 chr1 113069559 113069614 -84125818 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1 1447 351 167 13 77 chr1 113069773 113069851 -84125581 - RLTR22_Mur LTR ERVK -184 1664 1592 1 1447 1776 185 143 24 chr1 113070007 113070467 -84124965 - RLTR22_Mur LTR ERVK -871 977 463 1 1447 315 0 0 0 chr1 113070467 113070502 -84124930 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1447 655 199 14 28 chr1 113070502 113070647 -84124785 - RLTR22_Mur LTR ERVK -1705 143 1 1 1447 776 297 98 50 chr1 113071789 113072126 -84123306 - ORR1E LTR MaLR -6 353 1 1 1447 23 54 0 0 chr1 113073432 113073469 -84121963 + AT_rich Low_complexity Low_complexity 1 37 0 1 1447 21 0 0 0 chr1 113074006 113074027 -84121405 + AT_rich Low_complexity Low_complexity 1 21 0 1 1447 267 31 0 0 chr1 113074115 113074147 -84121285 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1447 1882 244 50 13 chr1 113074924 113075853 -84119579 + Lx6 LINE L1 892 1809 -4071 1 1447 446 223 29 87 chr1 113075852 113076024 -84119408 + Lx6 LINE L1 3816 3977 -1903 1 1447 2408 111 13 0 chr1 113076021 113076399 -84119033 - MusHAL1 LINE L1 -638 2074 1692 1 1447 5887 159 76 11 chr1 113076400 113078132 -84117300 + Lx LINE L1 4810 6653 -1 1 1447 360 145 0 50 chr1 113078136 113078216 -84117216 + Lx6 LINE L1 3974 4049 -1831 1 1447 546 188 37 8 chr1 113078196 113078330 -84117102 + L1_Mur3 LINE L1 1676 1813 -4067 1 1447 1407 244 28 91 chr1 113078351 113078956 -84116476 - L1_Mur3 LINE L1 -3476 2404 1838 1 1447 6231 244 52 5 chr1 113078955 113079547 -84115885 + Lx6 LINE L1 4030 4658 -1222 1 1447 441 50 0 0 chr1 113079547 113079607 -84115825 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1 1447 6231 244 52 5 chr1 113079607 113080148 -84115284 + Lx6 LINE L1 4659 5215 -665 1 1447 299 108 31 0 chr1 113080148 113080213 -84115219 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1 1447 6231 243 28 8 chr1 113080213 113080975 -84114457 + Lx6 LINE L1 5216 6011 -1449 1 1447 1036 255 62 15 chr1 113082204 113082736 -84112696 + L1_Mur2 LINE L1 888 1389 -4488 1 1447 34246 67 3 2 chr1 113082732 113087918 -84107514 + L1Md_F3 LINE L1 438 5585 -298 1 1447 7751 47 10 2 chr1 113087919 113088897 -84106535 + L1Md_F3 LINE L1 5587 6572 -12 1 1447 369 0 0 0 chr1 113089131 113089172 -84106260 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1447 26 30 0 0 chr1 113090345 113090378 -84105054 + AT_rich Low_complexity Low_complexity 1 33 0 1 1447 238 268 186 65 chr1 113091482 113091615 -84103817 - Lx9 LINE L1 -18 7626 7460 1 1447 354 98 0 0 chr1 113091615 113091666 -84103766 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1447 238 268 186 65 chr1 113091666 113091811 -84103621 - Lx9 LINE L1 -185 7459 7314 1 1447 1423 271 48 20 chr1 113091853 113092350 -84103082 + Lx9 LINE L1 6713 7223 -421 1 1447 255 103 0 0 chr1 113092477 113092516 -84102916 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1447 384 22 0 0 chr1 113092613 113092658 -84102774 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1447 471 33 0 0 chr1 113092659 113092719 -84102713 - B1_Mm SINE Alu -12 135 76 1 1447 230 222 26 77 chr1 113092719 113092736 -84102696 - ID_B1 SINE B4 -11 212 140 1 1447 1376 232 67 63 chr1 113093159 113093684 -84101748 - RLTR11A2 LTR ERVK 0 527 1 1 1447 2660 250 64 35 chr1 113093688 113094387 -84101045 - MYSERV6-int LTR ERVK -88 8871 8257 1 1447 279 0 0 0 chr1 113094387 113094418 -84101014 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 1447 2660 254 77 23 chr1 113094418 113094856 -84100576 - MYSERV6-int LTR ERVK -703 8256 7825 1 1447 738 23 0 0 chr1 113095131 113095219 -84100213 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 1 1447 378 0 0 0 chr1 113095710 113095752 -84099680 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1447 351 0 0 0 chr1 113095752 113095790 -84099642 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1447 468 352 28 57 chr1 113096050 113096261 -84099171 + B4A SINE B4 20 224 -68 1 1447 221 258 16 0 chr1 113096261 113096323 -84099109 + (CAA)n Simple_repeat Simple_repeat 1 63 0 1 1447 395 389 100 9 chr1 113097364 113097595 -84097837 + B4A SINE B4 41 292 0 1 1447 4782 46 0 0 chr1 113097851 113098459 -84096973 - L1_Mm LINE L1 -2497 3386 2779 1 1447 4223 56 2 2 chr1 113098460 113098997 -84096435 + L1Md_F2 LINE L1 6045 6581 -1 1 1447 275 283 177 21 chr1 113099556 113099697 -84095735 - Lx8 LINE L1 -130 7343 7181 1 1447 976 51 0 48 chr1 113099810 113099955 -84095477 - L1_Mus1 LINE L1 -3 6564 6427 1 1447 347 343 155 50 chr1 113101362 113101620 -84093812 - B4A SINE B4 0 292 8 1 1447 234 0 0 0 chr1 113104510 113104536 -84090896 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1447 396 323 0 0 chr1 113104581 113104680 -84090752 + B3A SINE B2 49 147 -51 1 1447 387 0 0 0 chr1 113104681 113104724 -84090708 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1447 6763 91 80 1 chr1 113104876 113105926 -84089506 - L1_Mus3 LINE L1 0 6638 5506 1 1447 280 299 109 55 chr1 113106474 113106675 -84088757 + L1M2 LINE L1 4607 4822 -1321 1 1447 1091 97 0 0 chr1 113106675 113106820 -84088612 - B1_Mus2 SINE Alu 0 147 3 1 1447 280 299 109 55 chr1 113106820 113106929 -84088503 + L1M2 LINE L1 4823 4934 -1209 1 1447 221 304 0 51 chr1 113106945 113107004 -84088428 + B1_Mus1 SINE Alu 1 56 -92 1 1447 380 236 36 54 chr1 113107021 113107133 -84088299 + B1_Mur3 SINE Alu 40 149 0 1 1447 192 77 0 0 chr1 113107133 113107159 -84088273 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1447 24 0 0 0 chr1 113107316 113107340 -84088092 + AT_rich Low_complexity Low_complexity 1 24 0 1 1447 22 0 0 0 chr1 113107752 113107774 -84087658 + AT_rich Low_complexity Low_complexity 1 22 0 1 1447 251 260 0 64 chr1 113107861 113108017 -84087415 + A-rich Low_complexity Low_complexity 6 151 0 1 1447 743 107 0 0 chr1 113108397 113108519 -84086913 - L1Md_A LINE L1 0 6582 6461 1 1447 2389 202 38 24 chr1 113108709 113109262 -84086170 - Lx LINE L1 0 6654 6094 1 1447 296 115 20 49 chr1 113109256 113109325 -84086107 - Lx2 LINE L1 -1149 5909 5841 1 1447 485 303 116 9 chr1 113109652 113109885 -84085547 - Lx8 LINE L1 -1564 5909 5652 1 1447 2446 220 16 6 chr1 113109893 113110396 -84085036 - RLTR11A LTR ERVK -2 526 19 1 1447 1101 301 77 25 chr1 113110672 113111296 -84084136 - Lx5 LINE L1 -26 7434 6460 1 1447 274 314 12 0 chr1 113111352 113111438 -84083994 - Lx5 LINE L1 -854 6606 6520 1 1447 6697 212 20 20 chr1 113111466 113112722 -84082710 - Lx4B LINE L1 -2 7056 5798 1 1447 4360 80 3 2 chr1 113112722 113113301 -84082131 - L1_Mus2 LINE L1 -1 6565 5986 1 1447 889 133 0 0 chr1 113113301 113113436 -84081996 - B1_Mus1 SINE Alu -13 135 1 1 180 17038 183 95 36 chr1 113113436 113115504 -84079928 - L1_Mur2 LINE L1 -86 5791 3646 1 1448 228 67 0 0 chr1 113115504 113115534 -84079898 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 1448 17038 183 95 36 chr1 113115534 113116214 -84079218 - L1_Mur2 LINE L1 -2232 3645 2994 1 1448 5295 66 4 1 chr1 113116214 113116900 -84078532 - L1_Mus1 LINE L1 0 6567 5880 1 1448 17038 183 95 36 chr1 113116900 113117259 -84078173 - L1_Mur2 LINE L1 -2884 2993 2638 1 1448 618 51 0 0 chr1 113117259 113117337 -84078095 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1448 17038 183 95 36 chr1 113117337 113117761 -84077671 - L1_Mur2 LINE L1 -3240 2637 2064 1 1448 228 111 0 0 chr1 113117761 113117797 -84077635 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1448 17038 183 95 36 chr1 113117797 113118565 -84076867 - L1_Mur2 LINE L1 -3814 2063 1238 1 1448 2108 265 50 27 chr1 113118532 113119199 -84076233 - L1_Mur2 LINE L1 -5968 1118 437 1 1448 9390 118 8 32 chr1 113119242 113120698 -84074734 - Lx3_Mus LINE L1 -3 7006 5587 1 1448 1576 261 35 2 chr1 113120725 113121182 -84074250 - L1_Mur3 LINE L1 -150 5730 5259 1 1448 2090 250 39 19 chr1 113121269 113122111 -84073321 - Lx5 LINE L1 -833 6217 5354 1 1448 345 289 43 17 chr1 113122112 113122228 -84073204 - URR1A DNA MER1_type -106 120 2 1 1448 772 276 128 5 chr1 113122231 113122384 -84073048 + L1_Mur3 LINE L1 4239 4420 -1460 1 1448 378 0 0 0 chr1 113122384 113122426 -84073006 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1448 772 276 128 5 chr1 113122426 113122716 -84072716 + L1_Mur3 LINE L1 4421 4736 -1144 1 1448 270 213 104 26 chr1 113123003 113123080 -84072352 + MTEa LTR MaLR 160 242 -137 1 1448 942 287 65 20 chr1 113123411 113123763 -84071669 - ORR1D2 LTR MaLR 0 370 3 1 1448 394 267 77 9 chr1 113123782 113123914 -84071518 - ORR1D2-int LTR MaLR -35 1335 1212 1 1448 7925 56 2 1 chr1 113123928 113125566 -84069866 - L1Md_F2 LINE L1 -12 6570 4931 1 1448 13141 58 5 0 chr1 113125564 113127263 -84068169 + L1Md_F2 LINE L1 3227 4934 -949 1 1448 355 256 0 0 chr1 113127333 113127415 -84068017 - ORR1D2-int LTR MaLR -303 1067 986 1 1448 1158 75 0 0 chr1 113127767 113127913 -84067519 + B1_Mus1 SINE Alu 3 148 0 1 1448 204 40 0 0 chr1 113128011 113128036 -84067396 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1448 670 365 36 36 chr1 113128242 113128518 -84066914 - B4A SINE B4 -4 288 13 1 1448 1096 68 7 0 chr1 113130050 113130196 -84065236 - B1_Mus1 SINE Alu -1 147 1 1 1448 492 250 45 19 chr1 113130216 113130371 -84065061 + Lx7 LINE L1 7537 7695 -1 1 1448 308 330 0 0 chr1 113130559 113130677 -84064755 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1448 2724 88 29 17 chr1 113130883 113131298 -84064134 - BGLII LTR ERVK -1 420 1 1 1448 3179 207 58 47 chr1 113131303 113132240 -84063192 - RMER3D-int LTR ERVK -5 2837 1891 1 1448 663 166 59 46 chr1 113132209 113132361 -84063071 - RMER3D-int LTR ERVK -1148 1694 1541 1 1448 1330 180 175 18 chr1 113132402 113132849 -84062583 - RMER3D-int LTR ERVK -1310 1532 1016 1 1448 242 27 81 0 chr1 113132917 113132954 -84062478 + (TTTCC)n Simple_repeat Simple_repeat 3 42 0 1 1448 2274 299 43 15 chr1 113133084 113134028 -84061404 - MYSERV6-int LTR ERVK -7656 1303 200 1 1448 2811 96 32 7 chr1 113135548 113135959 -84059473 - BGLII LTR ERVK 0 421 1 1 1448 12945 109 12 6 chr1 113136006 113139031 -84056401 - Lx3_Mus LINE L1 0 7009 3973 1 1448 186 208 0 0 chr1 113139515 113139563 -84055869 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1448 414 39 0 0 chr1 113140143 113140195 -84055237 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1448 232 255 0 0 chr1 113140196 113140247 -84055185 + GA-rich Low_complexity Low_complexity 2 52 0 1 1448 1751 264 87 41 chr1 113140483 113141068 -84054364 + RMER13A LTR ERVK 5 616 -244 1 1448 441 313 52 52 chr1 113141109 113141281 -84054151 + RMER13A LTR ERVK 737 908 0 1 1448 25 51 0 0 chr1 113141282 113141321 -84054111 + AT_rich Low_complexity Low_complexity 1 39 0 1 1448 21 0 0 0 chr1 113141638 113141659 -84053773 + AT_rich Low_complexity Low_complexity 1 21 0 1 1448 332 400 17 109 chr1 113141893 113142123 -84053309 + B3A SINE B2 2 210 -6 1 1448 265 244 50 42 chr1 113142374 113142494 -84052938 - L1M2 LINE L1 -693 5598 5478 1 1448 463 261 11 92 chr1 113142511 113142773 -84052659 - L1_Rod LINE L1 -1355 4492 4252 1 1448 705 162 40 86 chr1 113142791 113142966 -84052466 + RMER19C LTR ERVK 1 167 -444 1 1448 7893 213 26 16 chr1 113143577 113145493 -84049939 + L1_Mur2 LINE L1 2264 4198 -1679 1 1448 300 27 0 0 chr1 113145499 113145536 -84049896 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1448 1001 251 90 74 chr1 113145536 113145914 -84049518 + RLTR20B3 LTR ERVK 20 403 -174 1 1448 3066 194 61 7 chr1 113145919 113146629 -84048803 + L1_Mur2 LINE L1 4801 5548 -329 1 1448 24 0 0 0 chr1 113147959 113147983 -84047449 + AT_rich Low_complexity Low_complexity 1 24 0 1 1448 237 83 0 0 chr1 113148837 113148873 -84046559 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1 1448 467 165 24 0 chr1 113149912 113149997 -84045435 - Lx2B LINE L1 -1080 5920 5834 1 1448 904 170 48 0 chr1 113149995 113150196 -84045236 - L1_Mur1 LINE L1 -2625 3261 3051 1 1448 2083 122 41 41 chr1 113150196 113150563 -84044869 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1448 54682 18 28 11 chr1 113150567 113156929 -84038503 - IAPEz-int LTR ERVK -4 6477 8 2 1448 2083 122 41 41 chr1 113156929 113157296 -84038136 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1448 326 125 0 0 chr1 113157296 113157344 -84038088 - L1_Mur1 LINE L1 -2830 3056 3009 1 1448 2805 46 6 0 chr1 113157344 113157695 -84037737 - L1Md_F2 LINE L1 -5 6577 6225 2 1448 324 149 162 15 chr1 113157695 113157714 -84037718 - L1_Mur3 LINE L1 -2880 3000 2971 2 1448 5450 126 20 24 chr1 113157742 113157776 -84037656 - L1_Mm LINE L1 -1068 4815 4791 2 1448 2676 107 42 0 chr1 113157776 113158186 -84037246 - L1_Mus3 LINE L1 -2 6636 6210 2 1448 5450 126 20 24 chr1 113158186 113159079 -84036353 - L1_Mm LINE L1 -1093 4790 3891 2 1448 449 75 0 0 chr1 113159076 113159143 -84036289 - L1_Mur1 LINE L1 -2117 3769 3703 2 1448 1660 50 0 18 chr1 113159536 113159758 -84035674 - L1Md_F2 LINE L1 -15 6567 6350 2 1448 3767 48 32 0 chr1 113159758 113160232 -84035200 + L1Md_F2 LINE L1 5856 6344 -238 2 1448 208 259 0 0 chr1 113160318 113160372 -84035060 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1448 249 380 8 40 chr1 113160497 113160623 -84034809 - RSINE1 SINE B4 -41 124 3 2 1448 450 0 0 0 chr1 113162026 113162076 -84033356 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2 1448 489 250 0 10 chr1 113162099 113162216 -84033216 - B1F1 SINE Alu -27 122 7 2 1448 29 90 0 0 chr1 113162589 113162667 -84032765 + AT_rich Low_complexity Low_complexity 1 78 0 2 1448 544 338 0 0 chr1 113162865 113163004 -84032428 + B1_Mur1 SINE Alu 7 145 -4 2 1448 293 125 0 18 chr1 113163005 113163062 -84032370 + (CAT)n Simple_repeat Simple_repeat 2 57 0 2 1448 684 24 0 0 chr1 113163063 113163145 -84032287 + (GAA)n Simple_repeat Simple_repeat 3 84 0 2 1448 189 0 0 0 chr1 113163385 113163406 -84032026 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1448 552 77 0 0 chr1 113163406 113163483 -84031949 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1448 230 236 76 114 chr1 113164803 113164820 -84030612 + MT2B2 LTR ERVL 151 247 -333 2 1448 430 250 12 0 chr1 113164820 113164904 -84030528 + B1_Mur3 SINE Alu 1 85 -64 2 1448 929 205 173 4 chr1 113165735 113165960 -84029472 - Lx3B LINE L1 -8 6968 6706 2 1448 1721 124 6 95 chr1 113165941 113166288 -84029144 - Lx3B LINE L1 -742 6231 5916 2 1448 435 68 0 0 chr1 113166297 113166356 -84029076 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1448 8024 43 2 1 chr1 113166356 113167584 -84027848 - L1Md_F3 LINE L1 -31 6553 5324 2 1448 22 88 0 0 chr1 113167638 113167695 -84027737 + AT_rich Low_complexity Low_complexity 1 57 0 2 1448 1178 88 23 17 chr1 113168264 113168402 -84027030 + B2_Mm1a SINE B2 2 139 -54 2 1448 261 0 0 0 chr1 113168402 113168431 -84027001 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1448 1178 88 23 17 chr1 113168431 113168465 -84026967 + B2_Mm1a SINE B2 140 175 -18 2 1448 364 378 44 19 chr1 113168758 113168917 -84026515 + B3A SINE B2 42 204 -12 2 1448 392 118 15 0 chr1 113168974 113169042 -84026390 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1448 37169 48 1 3 chr1 113169178 113175569 -84019863 - L1Md_T LINE L1 0 6585 114 2 1448 678 344 13 46 chr1 113176218 113176520 -84018912 + RLTR18 LTR ERVK 13 304 -312 2 1448 882 334 31 9 chr1 113176572 113176889 -84018543 + RLTR18B LTR ERVK 186 509 -3 2 1448 331 337 80 38 chr1 113177234 113177447 -84017985 - MLT1D LTR MaLR -281 224 3 2 1448 24 0 0 0 chr1 113177765 113177789 -84017643 + AT_rich Low_complexity Low_complexity 1 24 0 2 1448 1175 228 48 16 chr1 113178501 113178751 -84016681 - RMER20A LTR ERVK -258 258 1 2 1448 707 226 14 0 chr1 113178754 113178900 -84016532 - MERVK26-int LTR ERVK -1 6918 6771 2 1448 354 339 26 40 chr1 113179027 113179254 -84016178 - MERVK26-int LTR ERVK -238 1490 1267 2 1448 492 86 0 0 chr1 113179307 113179377 -84016055 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 1448 655 149 117 28 chr1 113179400 113179545 -84015887 - Lx LINE L1 -8 6646 6489 2 1448 2629 115 141 0 chr1 113179544 113179962 -84015470 + Lx LINE L1 5906 6382 -272 2 1448 6765 128 28 3 chr1 113180659 113182263 -84013169 - L1_Mus3 LINE L1 -7 6631 4983 2 1448 438 322 66 55 chr1 113183094 113183350 -84012082 - MERVK26-int LTR ERVK -6571 348 90 2 1448 271 146 127 0 chr1 113183518 113183573 -84011859 - RMER20A LTR ERVK -454 62 1 2 1448 408 282 182 11 chr1 113183610 113183786 -84011646 - ORR1C2 LTR MaLR -75 309 104 2 1448 560 14 14 0 chr1 113183786 113183855 -84011577 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2 1448 22 0 0 0 chr1 113183871 113183893 -84011539 + AT_rich Low_complexity Low_complexity 1 22 0 2 1448 477 34 0 0 chr1 113183894 113183953 -84011479 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1448 387 358 35 9 chr1 113183954 113184185 -84011247 - Lx7 LINE L1 -382 7314 7078 2 1448 228 67 0 0 chr1 113184419 113184449 -84010983 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1448 24 85 0 0 chr1 113185601 113185660 -84009772 + AT_rich Low_complexity Low_complexity 1 59 0 2 1448 10398 158 48 8 chr1 113185690 113187702 -84007730 - L1_Mur2 LINE L1 -1433 4444 2352 2 1448 2580 163 25 25 chr1 113187685 113188201 -84007231 + L1_Mur2 LINE L1 4423 4938 -939 2 1448 2417 128 3 0 chr1 113188207 113188560 -84006872 + MTB LTR MaLR 5 358 -42 2 1448 752 246 0 0 chr1 113188560 113188727 -84006705 - MERVL-int LTR ERVL -5305 180 14 2 1448 6062 156 19 20 chr1 113188727 113189096 -84006336 + Lx4A LINE L1 4747 5128 -749 2 1448 1598 52 0 0 chr1 113189096 113189287 -84006145 - B2_Mm1t SINE B2 -2 191 1 2 1448 6062 157 17 20 chr1 113189287 113190198 -84005234 + Lx4A LINE L1 5129 6028 -1030 2 1448 3986 224 41 2 chr1 113190211 113191067 -84004365 + Lx4A LINE L1 6170 7058 0 2 1448 40 0 0 0 chr1 113191131 113191171 -84004261 + AT_rich Low_complexity Low_complexity 1 40 0 2 1448 4061 102 22 0 chr1 113192786 113193374 -84002058 + L1_Mus2 LINE L1 5966 6566 0 2 1448 351 44 0 0 chr1 113193395 113193440 -84001992 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1448 1056 140 0 0 chr1 113193600 113193757 -84001675 + B2_Mm2 SINE B2 2 158 -37 2 1448 558 246 0 9 chr1 113193790 113193905 -84001527 + B3 SINE B2 17 130 -86 2 1448 2033 253 48 6 chr1 113195207 113195413 -84000019 - L1_Mur2 LINE L1 -697 5486 5224 2 1448 285 98 0 0 chr1 113195413 113195454 -83999978 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1448 2033 237 51 5 chr1 113195454 113195882 -83999550 - L1_Mur2 LINE L1 -654 5223 4788 2 1448 992 243 9 9 chr1 113195958 113196182 -83999250 + RMER20B LTR ERVK 6 229 -398 2 1448 1660 197 13 3 chr1 113196183 113196489 -83998943 + RLTR27 LTR ERVK 1 309 0 2 1448 348 57 38 0 chr1 113196513 113196566 -83998866 + RLTR10-int LTR ERVK 163 267 -7314 2 1448 679 228 45 64 chr1 113196598 113196800 -83998632 + RLTR10-int LTR ERVK 655 852 -1135 2 1448 22 0 0 0 chr1 113197211 113197233 -83998199 + AT_rich Low_complexity Low_complexity 1 22 0 2 1448 6488 38 16 5 chr1 113197233 113198035 -83997397 - L1Md_F3 LINE L1 -1 6583 5773 2 1448 306 198 54 54 chr1 113198035 113198147 -83997285 + RLTR10-int LTR ERVK 1296 1407 -5414 2 1448 335 313 35 29 chr1 113198393 113198564 -83996868 + MMERVK10C-int LTR ERVK 6898 7069 -512 2 1448 1420 147 35 35 chr1 113198698 113198959 -83996473 + MMERVK10C-int LTR ERVK 7321 7581 0 2 1448 1712 193 13 3 chr1 113198959 113199265 -83996167 + RLTR27 LTR ERVK 1 309 0 2 1448 1510 229 37 73 chr1 113199273 113199683 -83995749 + RMER20B LTR ERVK 233 627 0 2 1448 938 313 36 6 chr1 113199695 113200104 -83995328 + Lx5 LINE L1 6190 6830 -630 2 1448 1226 271 77 11 chr1 113200104 113200466 -83994966 + ORR1B1 LTR MaLR 1 386 -8 2 1448 1514 262 22 20 chr1 113200470 113200874 -83994558 + ORR1B1-int LTR MaLR 1 405 -1104 2 1448 3142 198 180 14 chr1 113200874 113201952 -83993480 + RLTR21 LTR ERVK 1 1253 -319 2 1448 452 73 0 29 chr1 113201952 113202022 -83993410 + (TATG)n Simple_repeat Simple_repeat 1 68 0 2 1448 3142 189 208 11 chr1 113202022 113202282 -83993150 + RLTR21 LTR ERVK 1254 1568 -4 2 1448 316 150 0 32 chr1 113202285 113202347 -83993085 + ORR1B1-int LTR MaLR 401 460 -1049 2 1448 2734 250 63 8 chr1 113202349 113202737 -83992695 + ORR1B1-int LTR MaLR 742 1142 -367 2 1448 180 0 0 0 chr1 113202737 113202757 -83992675 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1448 2734 250 63 8 chr1 113202757 113203095 -83992337 + ORR1B1-int LTR MaLR 1143 1507 -2 2 1448 1445 240 76 11 chr1 113203095 113203465 -83991967 + ORR1B1 LTR MaLR 1 394 0 2 1448 606 337 41 25 chr1 113203465 113203833 -83991599 + Lx6 LINE L1 6979 7253 -207 2 1448 8302 43 2 0 chr1 113203840 113205190 -83990242 - L1Md_F2 LINE L1 -3 6579 5228 2 1448 24 32 0 0 chr1 113205412 113205443 -83989989 + AT_rich Low_complexity Low_complexity 1 31 0 2 1448 293 212 98 8 chr1 113205443 113205576 -83989856 - Lx9 LINE L1 -13 7631 7487 2 1448 665 261 12 43 chr1 113205583 113205839 -83989593 - Lx9 LINE L1 -106 7538 7291 2 1448 1212 244 94 41 chr1 113205917 113206280 -83989152 - RLTR20B3 LTR ERVK -56 521 140 2 1448 412 242 76 3 chr1 113206264 113206387 -83989045 + RLTR20B3 LTR ERVK 391 533 -1 2 1448 5920 198 94 103 chr1 113207482 113209509 -83985923 + MYSERV16_I-int LTR ERVK 5 1984 -342 2 1448 6149 62 0 0 chr1 113209517 113210298 -83985134 - L1Md_F2 LINE L1 -2 6580 5800 2 1448 2452 45 0 0 chr1 113210298 113210589 -83984843 - L1Md_F2 LINE L1 -183 5700 5410 2 1448 23489 85 4 0 chr1 113210589 113214656 -83980776 - L1Md_F2 LINE L1 -1401 4482 400 2 1448 1195 160 42 19 chr1 113214663 113214924 -83980508 + MYSERV16_I-int LTR ERVK 1979 2245 -81 2 1448 354 264 67 67 chr1 113214985 113215119 -83980313 + RLTR20B2 LTR ERVK 20 153 -407 2 1448 21 0 0 0 chr1 113215142 113215163 -83980269 + AT_rich Low_complexity Low_complexity 1 21 0 2 1448 42 20 0 0 chr1 113215457 113215506 -83979926 + AT_rich Low_complexity Low_complexity 1 49 0 2 1448 180 97 0 0 chr1 113215753 113215784 -83979648 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 2 1448 10009 136 39 5 chr1 113215960 113219153 -83976279 - L1VL4 LINE L1 -1 3913 556 2 1448 26 50 0 0 chr1 113220722 113220762 -83974670 + AT_rich Low_complexity Low_complexity 1 40 0 2 1448 431 291 137 49 chr1 113221533 113221818 -83973614 + RLTR40 LTR ERVK 461 770 -47 2 1448 498 57 0 0 chr1 113221902 113221972 -83973460 + (A)n Simple_repeat Simple_repeat 1 70 0 2 1448 4108 225 46 23 chr1 113222978 113223073 -83972359 + L1_Mur2 LINE L1 1168 1262 -5824 2 1448 441 0 0 0 chr1 113223073 113223122 -83972310 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1448 4108 236 47 88 chr1 113223122 113224670 -83970762 + L1_Mur2 LINE L1 1263 2744 -3133 2 1448 16742 155 48 52 chr1 113224661 113225294 -83970138 + Lx3B LINE L1 2208 2800 -3086 2 1448 222 91 0 0 chr1 113225294 113225327 -83970105 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 1448 16742 155 48 52 chr1 113225327 113226020 -83969412 + Lx3B LINE L1 2801 3438 -2448 2 1448 228 35 0 0 chr1 113226020 113226049 -83969383 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 1448 16742 155 48 52 chr1 113226049 113226060 -83969372 + Lx3B LINE L1 3439 3455 -2431 2 1448 1159 81 12 6 chr1 113226060 113226233 -83969199 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 2 1448 16742 155 48 52 chr1 113226233 113228255 -83967177 + Lx3B LINE L1 3456 5566 -320 2 1448 3064 50 10 0 chr1 113228255 113228639 -83966793 + RLTR10 LTR ERVK 1 388 -2 2 1448 16742 157 29 20 chr1 113228639 113230039 -83965393 + Lx3B LINE L1 5567 6973 0 2 1448 288 0 0 0 chr1 113230061 113230093 -83965339 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1448 9883 212 34 25 chr1 113230094 113232687 -83962745 + L1_Mur2 LINE L1 2603 5217 -660 2 1448 727 195 107 73 chr1 113233980 113234174 -83961258 + RMER20A LTR ERVK 13 213 -303 2 1448 1967 99 35 71 chr1 113234174 113234512 -83960920 - RLTR22_Mus LTR ERVK -1 1807 1482 2 1448 739 128 8 16 chr1 113234512 113234639 -83960793 - RMER17D2 LTR ERVK 0 809 684 2 1448 1728 158 68 3 chr1 113234648 113234971 -83960461 - RMER17D2 LTR ERVK -465 344 1 2 1448 10022 87 19 25 chr1 113234973 113235173 -83960259 - RLTR22_Mus LTR ERVK -323 1485 1299 2 1448 609 40 0 0 chr1 113235173 113235249 -83960183 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1448 10022 87 19 25 chr1 113235249 113235268 -83960164 - RLTR22_Mus LTR ERVK -510 1298 1298 2 1448 2406 71 61 9 chr1 113235268 113235596 -83959836 - ORR1A1 LTR MaLR -1 345 1 2 1448 10022 87 19 25 chr1 113235596 113235785 -83959647 - RLTR22_Mus LTR ERVK -510 1298 1110 2 1448 5114 52 0 2 chr1 113235785 113236422 -83959010 - L1Md_F3 LINE L1 0 6584 5949 3 1448 10022 87 19 25 chr1 113236422 113237505 -83957927 - RLTR22_Mus LTR ERVK -699 1109 2 2 1448 1281 248 19 25 chr1 113237505 113237814 -83957618 + RMER20A LTR ERVK 210 516 0 2 1448 1361 277 64 38 chr1 113237898 113238401 -83957031 - Lx9 LINE L1 -806 6838 6323 3 1448 552 126 0 0 chr1 113238650 113238737 -83956695 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 3 1448 447 87 0 0 chr1 113239213 113239282 -83956150 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1448 31 76 0 0 chr1 113239634 113239700 -83955732 + AT_rich Low_complexity Low_complexity 1 66 0 3 1448 24 0 0 0 chr1 113239740 113239764 -83955668 + AT_rich Low_complexity Low_complexity 1 24 0 3 1448 1722 176 3 0 chr1 113240422 113240728 -83954704 + Lx2B LINE L1 4927 5233 -653 3 1448 2200 172 13 0 chr1 113240732 113241173 -83954259 + Lx2B LINE L1 5497 5942 -1058 3 1448 480 41 0 14 chr1 113241187 113241261 -83954171 + L1Md_F2 LINE L1 6510 6582 0 3 1448 1783 232 20 26 chr1 113241650 113242110 -83953322 + Lx2B LINE L1 6006 6462 -514 3 1448 1081 211 84 37 chr1 113242094 113242390 -83953042 + Lx2B LINE L1 6653 6962 -14 3 1448 240 35 0 0 chr1 113242390 113242419 -83953013 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 3 1448 192 200 0 0 chr1 113242849 113242894 -83952538 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1448 584 244 36 103 chr1 113245155 113245457 -83949975 - Lx7 LINE L1 -2 7694 7413 3 1448 348 267 0 2 chr1 113245479 113245581 -83949851 - Lx7 LINE L1 -1130 6566 6457 3 22 1875 176 63 6 chr1 113246139 113246505 -83948927 - Lx3C LINE L1 -1 6975 6589 3 1449 3281 209 23 21 chr1 113247110 113247857 -83947575 - Lx2B LINE L1 -574 6426 5679 3 1449 777 229 48 0 chr1 113247869 113248057 -83947375 + L1_Mur1 LINE L1 5106 5302 -584 3 1449 3063 115 0 2 chr1 113248058 113248519 -83946913 - L1_Mus1 LINE L1 -1144 4739 4280 3 1449 7563 126 25 4 chr1 113248521 113250681 -83944751 + L1_Mus1 LINE L1 4745 6567 0 3 1449 305 358 18 30 chr1 113251016 113251183 -83944249 - MLT1B LTR MaLR 0 390 226 3 1449 2109 145 54 14 chr1 113251351 113251721 -83943711 - L1_Mus3 LINE L1 -35 6603 6219 3 1449 1787 144 7 0 chr1 113251719 113251996 -83943436 + L1_Mm LINE L1 5479 5757 -126 3 1449 1365 289 56 13 chr1 113252038 113252504 -83942928 - RLTR16 LTR ERVK -17 488 3 3 1449 423 0 0 0 chr1 113252910 113252957 -83942475 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1449 21 36 0 0 chr1 113254056 113254084 -83941348 + AT_rich Low_complexity Low_complexity 1 28 0 3 1449 266 108 62 0 chr1 113254147 113254212 -83941220 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1449 358 238 39 19 chr1 113254436 113254539 -83940893 - Lx7 LINE L1 -742 6954 6850 3 1449 369 253 68 40 chr1 113254568 113254745 -83940687 - Lx7 LINE L1 -793 6903 6722 3 1449 2947 35 3 0 chr1 113254923 113255268 -83940164 - ORR1A0 LTR MaLR 0 346 1 3 1449 248 168 94 35 chr1 113255392 113255504 -83939928 + Lx2B LINE L1 6884 7002 -6 3 1449 183 129 0 0 chr1 113255586 113255617 -83939815 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1449 22 0 0 0 chr1 113256120 113256142 -83939290 + AT_rich Low_complexity Low_complexity 1 22 0 3 1449 2373 163 40 72 chr1 113256187 113256787 -83938645 + RLTR19-int LTR ERVK 1059 1639 -4498 3 1449 562 189 36 129 chr1 113256798 113257023 -83938409 + RLTR19-int LTR ERVK 1864 2067 -4070 3 1449 6295 193 27 49 chr1 113257087 113258450 -83936982 - Lx4A LINE L1 -1 7057 5725 3 1449 1758 164 28 42 chr1 113258449 113258849 -83936583 + L1_Mur2 LINE L1 4515 4908 -969 3 1449 288 164 13 27 chr1 113258861 113258936 -83936496 - RLTR19-int LTR ERVK -2651 3486 3413 3 1449 29210 127 13 7 chr1 113258963 113265112 -83930320 - L1_Mus1 LINE L1 0 6567 380 3 1449 14393 194 40 47 chr1 113265177 113270074 -83925358 + Lx2B LINE L1 2153 7000 0 3 1449 296 48 0 23 chr1 113270075 113270118 -83925314 + (GGA)n Simple_repeat Simple_repeat 1 42 0 3 1449 1053 150 0 0 chr1 113270118 113270298 -83925134 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1449 888 164 0 0 chr1 113270333 113270498 -83924934 - Lx2 LINE L1 -1019 5978 5814 3 1449 1513 43 0 0 chr1 113270498 113270684 -83924748 + MERVL-int LTR ERVL 5186 5371 -114 3 1449 332 153 26 53 chr1 113270684 113270760 -83924672 + ORR1A3-int LTR MaLR 567 640 -1323 3 1449 292 26 0 0 chr1 113270760 113270798 -83924634 + MERVL-int LTR ERVL 5448 5485 0 3 1449 1503 43 0 0 chr1 113270798 113270986 -83924446 + MT2_Mm LTR ERVL 1 188 -305 3 1449 1262 57 8 2 chr1 113270977 113271153 -83924279 - MT-int LTR MaLR -151 947 796 3 1449 2391 180 64 22 chr1 113271154 113271653 -83923779 + Lx2 LINE L1 6437 6956 -41 3 1449 7230 84 7 24 chr1 113271685 113272839 -83922593 - L1_Mus2 LINE L1 -1 6565 5430 3 1449 2285 187 42 32 chr1 113272985 113273482 -83921950 + RLTR19-int LTR ERVK 4548 5049 -1088 3 1449 514 222 111 0 chr1 113273482 113273599 -83921833 + RLTR19-int LTR ERVK 5485 5614 -523 3 1449 713 250 0 18 chr1 113273767 113273938 -83921494 + RLTR19-int LTR ERVK 5859 6026 -111 3 1449 259 321 9 9 chr1 113274042 113274155 -83921277 + RLTR14-int LTR ERV1 4924 5036 -281 3 1449 343 167 19 126 chr1 113274203 113274306 -83921126 + RLTR19-int LTR ERVK 6045 6136 -1 3 1449 970 100 27 0 chr1 113274319 113274469 -83920963 - L1_Mus2 LINE L1 -1 6565 6412 3 1449 1351 152 0 20 chr1 113274501 113274749 -83920683 + RLTR19 LTR ERVK 10 252 -247 3 1449 1349 170 39 20 chr1 113276402 113276767 -83918665 - L1_Mus3 LINE L1 -44 6594 6352 3 1449 618 95 0 0 chr1 113276768 113276863 -83918569 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 3 1449 372 86 0 33 chr1 113276864 113276924 -83918508 - L1_Mus3 LINE L1 -256 6382 6325 3 1449 309 310 52 75 chr1 113277741 113277953 -83917479 - L1MC3 LINE L1 0 7785 7574 3 1449 761 211 0 26 chr1 113277953 113278104 -83917328 - B1_Mur4 SINE Alu -1 149 3 3 1449 309 313 57 67 chr1 113278104 113278326 -83917106 - L1MC3 LINE L1 -218 7777 7411 3 1449 758 76 49 0 chr1 113278326 113278470 -83916962 + RMER17B LTR ERVK 310 460 -498 3 1449 218 32 0 31 chr1 113278472 113278504 -83916928 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1449 25 31 0 0 chr1 113279050 113279082 -83916350 + AT_rich Low_complexity Low_complexity 1 32 0 3 1449 6029 31 5 7 chr1 113279165 113279899 -83915533 + L1Md_F3 LINE L1 5836 6568 -16 3 1449 777 157 6 42 chr1 113280142 113280308 -83915124 + Lx2 LINE L1 6837 6996 -1 3 1449 22 0 0 0 chr1 113281259 113281281 -83914151 + AT_rich Low_complexity Low_complexity 1 22 0 3 1449 213 222 0 0 chr1 113281546 113281600 -83913832 + T-rich Low_complexity Low_complexity 1 54 0 3 1449 28 0 0 0 chr1 113281717 113281745 -83913687 + AT_rich Low_complexity Low_complexity 1 28 0 3 1449 27 0 0 0 chr1 113282284 113282311 -83913121 + AT_rich Low_complexity Low_complexity 1 27 0 3 1449 867 109 20 0 chr1 113283578 113283725 -83911707 + (GA)n Simple_repeat Simple_repeat 2 151 0 3 1449 25 51 0 0 chr1 113284770 113284809 -83910623 + AT_rich Low_complexity Low_complexity 1 39 0 3 1449 226 231 0 0 chr1 113284820 113284872 -83910560 + GA-rich Low_complexity Low_complexity 1 52 0 3 1449 3124 202 123 16 chr1 113285617 113286618 -83908814 - Lx2B LINE L1 -3 6997 5893 3 1449 1002 68 0 0 chr1 113287118 113287266 -83908166 + (TCTA)n Simple_repeat Simple_repeat 3 150 0 3 1449 7838 117 12 71 chr1 113287885 113289158 -83906274 - Lx3_Mus LINE L1 -8 7001 5805 3 1449 1027 96 0 0 chr1 113289158 113289294 -83906138 + B1_Mm SINE Alu 2 137 -10 3 1449 505 0 31 0 chr1 113289294 113289359 -83906073 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1449 7838 117 12 71 chr1 113289359 113289454 -83905978 - Lx3_Mus LINE L1 -1205 5804 5714 3 1449 333 83 0 0 chr1 113289453 113289501 -83905931 + L1_Mur1 LINE L1 4282 4329 -1557 3 1449 1023 125 0 137 chr1 113289508 113289749 -83905683 - L1_Mur1 LINE L1 -1696 4190 3983 3 1449 541 332 5 10 chr1 113289863 113290061 -83905371 - Lx8 LINE L1 -274 7199 7003 3 1449 222 179 0 67 chr1 113290350 113290410 -83905022 + T-rich Low_complexity Low_complexity 2 57 0 3 1449 335 302 101 13 chr1 113290592 113290820 -83904612 + L1M3 LINE L1 5066 5313 -827 3 1449 276 284 86 0 chr1 113290925 113291006 -83904426 + ID_B1 SINE B4 117 204 -20 3 1449 209 226 16 0 chr1 113291912 113291974 -83903458 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1449 281 219 101 79 chr1 113292070 113292209 -83903223 - Charlie12 DNA MER1_type -2694 179 38 3 1449 677 203 8 0 chr1 113292514 113292637 -83902795 + B1_Mur4 SINE Alu 26 149 -1 3 1449 23 0 0 0 chr1 113292656 113292679 -83902753 + AT_rich Low_complexity Low_complexity 1 23 0 3 1449 625 213 29 34 chr1 113295414 113295589 -83899843 - Lx2B LINE L1 -14 6986 6813 3 1449 1788 218 11 103 chr1 113295582 113296145 -83899287 - L1_Mur1 LINE L1 -340 5546 5036 3 1449 8366 173 92 5 chr1 113296139 113297764 -83897668 + L1_Mur1 LINE L1 2901 4672 -1214 3 1449 3150 72 2 5 chr1 113297764 113298185 -83897247 + L1Md_F2 LINE L1 6163 6582 0 3 1449 8366 173 92 5 chr1 113298185 113298397 -83897035 + L1_Mur1 LINE L1 4673 4896 -990 3 1449 273 220 0 0 chr1 113298827 113298886 -83896546 + MERVK26-int LTR ERVK 4802 4860 -2059 3 1449 267 54 0 0 chr1 113299237 113299274 -83896158 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1449 45 34 0 0 chr1 113300814 113300873 -83894559 + AT_rich Low_complexity Low_complexity 1 59 0 3 1449 619 320 67 36 chr1 113300985 113301316 -83894116 - Lx9 LINE L1 -452 7192 6852 3 1449 253 343 126 11 chr1 113301293 113301563 -83893869 - Lx9 LINE L1 -924 6720 6403 3 1449 303 370 8 0 chr1 113302117 113302244 -83893188 - RSINE1 SINE B4 -35 130 3 3 1449 22 103 0 0 chr1 113302798 113302876 -83892556 + AT_rich Low_complexity Low_complexity 1 78 0 3 1449 420 253 103 39 chr1 113303738 113303894 -83891538 - Lx4B LINE L1 -3 7055 6890 3 1449 200 130 22 0 chr1 113304227 113304273 -83891159 + T-rich Low_complexity Low_complexity 4 50 0 3 1449 371 204 61 10 chr1 113304518 113304617 -83890815 + RLTR20C LTR ERVK 159 262 -272 3 1449 508 158 116 0 chr1 113304619 113304714 -83890718 + MT2B2 LTR ERVL 377 482 -102 3 1449 11673 122 15 5 chr1 113304716 113307325 -83888107 + L1VL4 LINE L1 153 2791 -768 3 1449 12117 108 16 29 chr1 113307343 113309758 -83885674 + L1Md_F2 LINE L1 446 2824 -3059 3 1449 6939 59 9 1 chr1 113309741 113310639 -83884793 + L1Md_F2 LINE L1 4681 5585 -298 3 1449 7751 56 3 2 chr1 113310640 113311656 -83883776 + L1Md_F2 LINE L1 5587 6582 0 3 1449 1871 174 36 129 chr1 113311747 113311894 -83883538 + L1_Mur1 LINE L1 3129 3276 -2610 3 1449 988 97 14 20 chr1 113311894 113312041 -83883391 + B1_Mus2 SINE Alu 2 147 0 3 1449 3798 125 31 16 chr1 113312041 113312333 -83883099 + L1_Mur1 LINE L1 3243 3516 -2370 3 1449 453 62 0 0 chr1 113312333 113312398 -83883034 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1449 3798 119 31 1 chr1 113312398 113312787 -83882645 + L1_Mur1 LINE L1 3514 3910 -4 3 1449 1032 325 100 26 chr1 113312900 113314133 -83881299 - Lx8 LINE L1 -1512 5961 4642 3 1449 342 0 0 0 chr1 113314133 113314171 -83881261 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1449 1032 330 109 21 chr1 113314171 113314452 -83880980 - Lx8 LINE L1 -1239 4641 4322 3 1449 201 132 0 0 chr1 113314457 113314495 -83880937 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1449 7565 150 23 31 chr1 113315151 113316969 -83878463 + Lx3_Mus LINE L1 5220 7009 0 3 1449 982 201 21 32 chr1 113317199 113317481 -83877951 + RMER17C LTR ERVK 1 279 -131 3 1449 963 189 121 96 chr1 113317526 113317889 -83877543 - RMER17C LTR ERVK -8 402 31 3 1449 410 0 20 0 chr1 113318431 113318481 -83876951 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1449 454 160 0 0 chr1 113318506 113318581 -83876851 + RMER6D LTR ERVK 1 75 -615 4 1449 635 170 59 0 chr1 113318572 113318707 -83876725 + RMER6D LTR ERVK 194 336 -384 4 1449 387 0 0 0 chr1 113318707 113318750 -83876682 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1449 306 0 0 0 chr1 113318751 113318785 -83876647 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1449 1350 183 0 0 chr1 113318795 113319036 -83876396 - L1_Mur1 LINE L1 -1297 4589 4349 4 1449 2505 145 21 11 chr1 113319036 113319503 -83875929 + L1_Mur1 LINE L1 4582 5053 -833 4 1449 378 213 27 0 chr1 113319499 113319574 -83875858 + L1_Mur1 LINE L1 5467 5543 -343 4 1449 1990 232 37 20 chr1 113319578 113320181 -83875251 - Lx2B LINE L1 -4 7004 6365 4 1449 32 26 0 0 chr1 113320490 113320529 -83874903 + AT_rich Low_complexity Low_complexity 1 39 0 4 1449 528 16 0 0 chr1 113320725 113320786 -83874646 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1449 282 179 0 0 chr1 113320786 113320842 -83874590 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1449 315 0 0 0 chr1 113321081 113321116 -83874316 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 4 1449 24 53 0 0 chr1 113322042 113322080 -83873352 + AT_rich Low_complexity Low_complexity 1 38 0 4 1449 239 111 0 0 chr1 113322645 113322681 -83872751 + U2 snRNA snRNA 1 36 -152 4 1449 1034 58 14 7 chr1 113324437 113324575 -83870857 + L1_Mm LINE L1 4884 5022 -861 4 1449 381 328 61 32 chr1 113324575 113324887 -83870545 + RLTR6-int LTR ERV1 3223 3543 -4058 4 1449 9741 69 2 0 chr1 113324901 113326167 -83869265 - L1_Mm LINE L1 -213 5670 4403 4 1449 38189 41 2 6 chr1 113326397 113332595 -83862837 - L1Md_T LINE L1 0 6582 416 4 1449 9505 59 1 0 chr1 113332594 113333831 -83861601 - L1_Mm LINE L1 -1470 4413 3176 4 1449 615 406 54 31 chr1 113333831 113334668 -83860764 + RLTR6-int LTR ERV1 3604 4459 -3147 4 1449 1108 331 29 27 chr1 113334949 113335508 -83859924 + RLTR6-int LTR ERV1 4836 5395 -2383 4 1449 404 312 15 12 chr1 113336193 113336396 -83859036 + MuRRS4-int LTR ERV1 4569 4736 -327 4 1449 7877 184 26 7 chr1 113336504 113338918 -83856514 - Lx2 LINE L1 -1 6996 4533 4 1449 1300 90 10 0 chr1 113338937 113339138 -83856294 - MusHAL1 LINE L1 -2286 426 224 4 1449 3960 102 4 2 chr1 113339150 113339701 -83855731 - L1_Mus1 LINE L1 -4 6563 6012 4 1449 15414 108 4 4 chr1 113339701 113342740 -83852692 + L1_Mus1 LINE L1 3548 6567 0 4 1449 27 62 0 0 chr1 113343496 113343544 -83851888 + AT_rich Low_complexity Low_complexity 1 48 0 4 1449 466 372 37 27 chr1 113343703 113344079 -83851353 - Lx8 LINE L1 -197 7276 6897 4 1449 4350 71 7 2 chr1 113344185 113344748 -83850684 - L1_Mm LINE L1 -92 5791 5226 4 1449 370 232 55 67 chr1 113344762 113344852 -83850580 - Lx8 LINE L1 -700 6773 6674 4 1449 405 0 0 0 chr1 113344945 113344990 -83850442 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1449 24 32 0 0 chr1 113345368 113345399 -83850033 + AT_rich Low_complexity Low_complexity 1 31 0 4 1449 412 102 0 43 chr1 113346206 113346298 -83849134 + L1_Mus4 LINE L1 6549 6636 0 4 1449 272 27 27 0 chr1 113346898 113346935 -83848497 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 4 1449 1008 97 8 0 chr1 113346935 113347069 -83848363 - B1_Mus2 SINE Alu -12 135 1 4 1449 486 240 16 16 chr1 113347341 113347464 -83847968 - RMER1C Other Other -361 981 859 4 1449 387 0 0 0 chr1 113347487 113347530 -83847902 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1449 243 0 0 0 chr1 113347724 113347751 -83847681 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 1449 759 78 0 0 chr1 113348007 113348110 -83847322 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1449 329 281 8 0 chr1 113349254 113349375 -83846057 + L1_Mur1 LINE L1 5239 5360 -526 4 1449 2880 94 2 5 chr1 113349534 113349929 -83845503 + L1_Mus2 LINE L1 6173 6566 0 4 1449 510 169 0 0 chr1 113349932 113350015 -83845417 - RMER16-int LTR ERVK -2589 2817 2735 4 1449 10594 188 28 31 chr1 113350021 113350180 -83845252 + Lx2 LINE L1 1999 2159 -3727 4 1449 990 43 0 21 chr1 113350180 113350322 -83845110 + L1Md_F2 LINE L1 6432 6570 -12 4 1449 10594 188 28 31 chr1 113350322 113352590 -83842842 + Lx2 LINE L1 2160 4417 -1469 4 1449 4598 209 27 27 chr1 113352588 113354318 -83841114 + Lx2 LINE L1 5275 6916 -134 4 1449 1840 217 60 2 chr1 113354435 113354851 -83840581 - L1_Mur3 LINE L1 -65 5815 5376 4 1449 355 92 22 33 chr1 113355196 113355286 -83840146 + (CAAAAA)n Simple_repeat Simple_repeat 2 90 0 4 1449 658 284 8 107 chr1 113355362 113355614 -83839818 - ORR1D1 LTR MaLR -139 235 9 4 1449 717 108 200 0 chr1 113355658 113355778 -83839654 + B1_Mm SINE Alu 1 144 -3 4 1449 5240 133 23 17 chr1 113355905 113357279 -83838153 + L1VL4 LINE L1 431 1805 -1754 4 1449 35418 53 12 10 chr1 113357289 113362556 -83832876 + L1Md_A LINE L1 307 5586 -297 4 1449 8125 40 3 0 chr1 113362556 113363578 -83831854 + L1Md_A LINE L1 5587 6582 0 4 1449 938 113 21 0 chr1 113363588 113363730 -83831702 + B1_Mus2 SINE Alu 3 147 0 4 1449 8022 140 25 12 chr1 113363738 113365208 -83830224 + L1VL4 LINE L1 1789 3277 -282 4 1449 2292 133 10 8 chr1 113365213 113365600 -83829832 + L1_Mus4 LINE L1 6242 6629 -7 4 1449 4019 181 1 118 chr1 113365606 113365966 -83829466 + Lx2 LINE L1 4999 5310 -573 4 1449 1829 180 53 0 chr1 113365966 113366321 -83829111 + Lx2 LINE L1 6623 6996 -1 4 1449 8193 163 16 32 chr1 113366321 113368064 -83827368 + Lx2 LINE L1 5311 6997 0 4 1449 12092 58 7 1 chr1 113368135 113370367 -83825065 - L1Md_F2 LINE L1 -4 6578 4334 4 1449 4500 256 65 14 chr1 113370963 113372278 -83823154 - Lx2B LINE L1 -5 6995 5614 4 1449 5938 211 36 26 chr1 113372283 113373769 -83821663 - Lx2B LINE L1 -638 5239 3738 4 1449 30 0 0 0 chr1 113373781 113373811 -83821621 + AT_rich Low_complexity Low_complexity 1 30 0 4 1449 903 304 23 23 chr1 113373820 113374083 -83821349 - B4 SINE B4 -4 288 26 4 1449 6399 169 16 8 chr1 113374372 113375516 -83819916 + Lx3B LINE L1 5746 6898 -75 4 1449 2341 155 7 31 chr1 113375682 113376101 -83819331 + RLTR9E LTR ERVK 1 409 0 4 1449 404 345 80 38 chr1 113376101 113376501 -83818931 - Lx8 LINE L1 -297 7176 6760 4 1449 525 324 7 7 chr1 113376705 113376854 -83818578 + MTEb LTR MaLR 1 149 -230 4 1450 21 57 0 0 chr1 113377535 113377570 -83817862 + AT_rich Low_complexity Low_complexity 1 35 0 4 1450 219 292 0 15 chr1 113377801 113377867 -83817565 + (CAT)n Simple_repeat Simple_repeat 2 66 0 4 1450 1891 135 13 6 chr1 113378265 113378579 -83816853 + L1_Mus3 LINE L1 6317 6632 -6 4 1450 245 226 38 0 chr1 113378639 113378692 -83816740 + B4A SINE B4 26 80 -212 4 1450 387 0 0 0 chr1 113378912 113378955 -83816477 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1450 265 24 23 23 chr1 113378992 113379035 -83816397 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 1450 207 0 0 0 chr1 113379162 113379185 -83816247 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1450 772 360 54 42 chr1 113379440 113380109 -83815323 + Lx8 LINE L1 6710 7386 -87 4 1450 248 154 0 19 chr1 113381014 113381067 -83814365 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1450 38 22 0 0 chr1 113381869 113381914 -83813518 + AT_rich Low_complexity Low_complexity 1 45 0 4 1450 402 21 0 0 chr1 113383293 113383340 -83812092 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1450 405 0 0 0 chr1 113383340 113383384 -83812048 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1450 297 0 0 0 chr1 113383384 113383416 -83812016 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1450 711 189 87 12 chr1 113385470 113385631 -83809801 + B2_Mm2 SINE B2 2 174 -21 4 1450 21 0 0 0 chr1 113385637 113385658 -83809774 + AT_rich Low_complexity Low_complexity 1 21 0 4 1450 25 0 0 0 chr1 113386502 113386527 -83808905 + AT_rich Low_complexity Low_complexity 1 25 0 4 1450 314 248 75 9 chr1 113386881 113386987 -83808445 - Lx7 LINE L1 -338 7358 7246 4 1450 213 48 67 67 chr1 113387002 113387021 -83808411 + A-rich Low_complexity Low_complexity 2 20 0 4 1450 186 71 0 0 chr1 113387021 113387049 -83808383 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 4 1450 213 48 67 67 chr1 113387049 113387074 -83808358 + A-rich Low_complexity Low_complexity 21 45 0 4 1450 3073 74 5 0 chr1 113387356 113387750 -83807682 + MTA_Mm LTR MaLR 1 396 0 4 1450 8624 56 5 0 chr1 113387750 113388843 -83806589 + MTA_Mm-int LTR MaLR 1 1098 0 4 1450 3093 71 3 0 chr1 113388843 113389235 -83806197 + MTA_Mm LTR MaLR 1 393 -3 4 1450 423 0 0 0 chr1 113389295 113389342 -83806090 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1450 311 331 15 37 chr1 113389349 113389484 -83805948 - B3A SINE B2 -66 132 1 4 1450 289 279 4 9 chr1 113390348 113390583 -83804849 + (CA)n Simple_repeat Simple_repeat 1 233 0 4 1450 192 261 0 0 chr1 113390658 113390723 -83804709 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1450 258 284 9 35 chr1 113390741 113390854 -83804578 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 4 1450 333 0 0 0 chr1 113390871 113390908 -83804524 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1450 477 50 0 0 chr1 113390908 113390967 -83804465 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1450 402 212 0 0 chr1 113391087 113391167 -83804265 + Lx7 LINE L1 5698 5777 -1919 4 1450 1165 348 62 27 chr1 113391404 113392190 -83803242 + Lx8 LINE L1 6418 7231 -242 4 1450 309 82 0 0 chr1 113392191 113392240 -83803192 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1450 319 321 82 37 chr1 113392942 113393200 -83802232 + Lx7 LINE L1 6772 7031 -665 4 1450 2063 190 22 0 chr1 113393205 113393590 -83801842 + L1_Mm LINE L1 5290 5683 -200 4 1450 3800 124 35 16 chr1 113393590 113394213 -83801219 + Lx LINE L1 6013 6647 -7 4 1450 2063 190 22 0 chr1 113394213 113394232 -83801200 + L1_Mm LINE L1 5684 5702 -181 4 1450 1069 170 0 10 chr1 113394294 113394496 -83800936 - L1_Mus4 LINE L1 -9 6627 6428 4 1450 21 36 0 0 chr1 113394848 113394876 -83800556 + AT_rich Low_complexity Low_complexity 1 28 0 4 1450 459 296 8 31 chr1 113395071 113395200 -83800232 - B1_Mur2 SINE Alu 0 149 24 4 1450 448 124 0 43 chr1 113396404 113396497 -83798935 + GA-rich Low_complexity Low_complexity 3 91 0 4 1450 504 0 0 0 chr1 113396797 113396853 -83798579 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 4 1450 3292 134 54 0 chr1 113396855 113397409 -83798023 - L1_Mm LINE L1 -1026 4857 4274 4 1450 9055 25 0 0 chr1 113397405 113399138 -83796294 - L1Md_T LINE L1 -2 6580 4848 4 1450 239 114 0 0 chr1 113399137 113399172 -83796260 - L1_Mm LINE L1 -1599 4284 4250 4 1450 3406 57 6 80 chr1 113399173 113399685 -83795747 + L1_Mus2 LINE L1 6093 6566 0 4 1450 3038 76 2 5 chr1 113399805 113400202 -83795230 - MTA_Mm LTR MaLR 0 396 1 4 1450 204 135 0 0 chr1 113400998 113401035 -83794397 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1450 276 172 0 0 chr1 113401247 113401305 -83794127 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 1450 4467 43 0 0 chr1 113402059 113402597 -83792835 + L1Md_T LINE L1 6045 6582 0 4 1450 21 0 0 0 chr1 113403205 113403226 -83792206 + AT_rich Low_complexity Low_complexity 1 21 0 5 1450 2213 182 28 7 chr1 113404152 113404577 -83790855 - L1_Mur2 LINE L1 -134 5743 5310 5 1450 2740 237 20 24 chr1 113404585 113405349 -83790083 + L1_Mur2 LINE L1 4498 5258 -619 5 1450 360 299 6 13 chr1 113405728 113405887 -83789545 - L1_Mur3 LINE L1 -2027 3853 3696 5 1450 228 111 0 0 chr1 113406053 113406089 -83789343 + (TAA)n Simple_repeat Simple_repeat 3 38 0 5 1450 7710 208 35 63 chr1 113406792 113409449 -83785983 + Lx4B LINE L1 889 3464 -2413 5 1450 6498 141 37 1 chr1 113409445 113410780 -83784652 + Lx LINE L1 5253 6648 -6 5 1450 2267 200 6 4 chr1 113410907 113411378 -83784054 + Lx4B LINE L1 3461 3932 -1945 5 1450 1666 164 132 0 chr1 113411370 113411711 -83783721 - L1_Mur2 LINE L1 -44 5833 5448 5 1450 2509 208 42 23 chr1 113411710 113412228 -83783204 + Lx4A LINE L1 6520 7047 -11 5 1450 26 0 0 0 chr1 113412228 113412254 -83783178 + AT_rich Low_complexity Low_complexity 1 26 0 5 1450 3724 182 9 44 chr1 113412267 113413010 -83782422 + Lx4B LINE L1 3916 4634 -1243 5 1450 210 37 0 0 chr1 113413010 113413037 -83782395 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1450 3724 182 9 44 chr1 113413037 113413142 -83782290 + Lx4B LINE L1 4635 4735 -1142 5 1450 5836 123 23 5 chr1 113413141 113414116 -83781316 + L1_Mur1 LINE L1 2176 3167 -2719 5 1450 3378 239 101 28 chr1 113414090 113415927 -83779505 + Lx4B LINE L1 4983 7054 -4 5 1450 321 271 48 7 chr1 113415934 113416079 -83779353 - L1_Rod LINE L1 -2441 3406 3256 5 1450 276 30 0 0 chr1 113416079 113416112 -83779320 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1450 224 152 61 0 chr1 113416146 113416212 -83779220 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 1450 35 78 0 0 chr1 113416216 113416293 -83779139 + AT_rich Low_complexity Low_complexity 1 77 0 5 1450 319 347 114 21 chr1 113416339 113416619 -83778813 + L1MB5 LINE L1 5860 6165 -9 5 1450 21 71 0 0 chr1 113416639 113416681 -83778751 + AT_rich Low_complexity Low_complexity 1 42 0 5 1450 860 309 4 0 chr1 113416982 113417215 -83778217 + Lx6 LINE L1 7204 7437 -23 5 1450 567 0 0 0 chr1 113417224 113417287 -83778145 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 1450 195 254 0 0 chr1 113417316 113417379 -83778053 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1450 396 0 0 0 chr1 113417380 113417424 -83778008 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 5 1450 24 53 0 0 chr1 113417732 113417770 -83777662 + AT_rich Low_complexity Low_complexity 1 38 0 5 1450 209 195 0 0 chr1 113417902 113417943 -83777489 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 1450 2463 239 4 24 chr1 113417946 113418482 -83776950 - Lx2B LINE L1 -5 6995 6471 5 1450 6967 108 75 6 chr1 113419903 113421593 -83773839 - L1_Mus1 LINE L1 0 6567 4736 5 1450 2645 124 12 0 chr1 113421578 113421988 -83773444 + L1_Mus1 LINE L1 4249 4663 -1220 5 1450 216 0 0 0 chr1 113421997 113422021 -83773411 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 5 1450 1422 244 12 14 chr1 113422035 113422442 -83772990 - Lx2B LINE L1 -47 6929 6504 5 1450 24 0 0 0 chr1 113422484 113422508 -83772924 + AT_rich Low_complexity Low_complexity 1 24 0 5 1450 23 33 0 0 chr1 113423180 113423210 -83772222 + AT_rich Low_complexity Low_complexity 1 30 0 5 1450 4923 160 25 5 chr1 113423210 113424065 -83771367 - Lx3A LINE L1 -2 6979 6108 5 1450 1409 195 0 4 chr1 113424115 113424377 -83771055 + L1Md_F LINE L1 272 532 -5987 5 1450 32497 125 36 3 chr1 113424376 113425982 -83769450 + L1Md_F2 LINE L1 301 1968 -3915 5 1450 582 15 0 0 chr1 113425982 113426049 -83769383 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 5 1450 32497 91 8 6 chr1 113426049 113430647 -83764785 + L1Md_F2 LINE L1 1969 6559 -23 5 1450 252 0 0 0 chr1 113430647 113430675 -83764757 + (TAA)n Simple_repeat Simple_repeat 1 28 0 5 1450 204 97 0 0 chr1 113430730 113430761 -83764671 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 5 1450 800 154 40 7 chr1 113430761 113430911 -83764521 - Lx3A LINE L1 -12 6969 6815 5 1450 23685 128 16 85 chr1 113430923 113432163 -83763269 - Lx3A LINE L1 -910 6099 4856 5 1450 192 40 0 0 chr1 113432163 113432188 -83763244 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 5 1450 23685 126 17 99 chr1 113432188 113434113 -83761319 - Lx3A LINE L1 -1031 4855 3008 5 1450 201 39 0 0 chr1 113434113 113434139 -83761293 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1450 23685 126 17 99 chr1 113434139 113434873 -83760559 - Lx3A LINE L1 -2879 3007 2318 5 1450 1905 162 140 19 chr1 113434873 113435245 -83760187 - RLTR9B2 LTR ERVK -3 417 1 5 1450 23685 126 17 99 chr1 113435245 113435776 -83759656 - Lx3A LINE L1 -3569 2317 1816 5 1450 647 232 183 50 chr1 113435776 113436016 -83759416 + RLTR10A LTR ERVK 140 411 0 5 1450 23685 126 17 99 chr1 113436016 113436445 -83758987 - Lx3A LINE L1 -3569 1815 1409 5 1450 3660 204 22 2 chr1 113436430 113437238 -83758194 - L1_Mur2 LINE L1 -513 5364 4541 5 1450 2141 174 88 2 chr1 113437216 113437671 -83757761 - L1_Mur2 LINE L1 -1922 3964 3471 5 1450 3425 200 29 14 chr1 113437683 113438398 -83757034 + Lx2B LINE L1 6262 6987 -13 5 1450 21 0 0 0 chr1 113438899 113438920 -83756512 + AT_rich Low_complexity Low_complexity 1 21 0 5 1450 273 70 35 17 chr1 113439256 113439314 -83756118 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 5 1450 1083 76 7 0 chr1 113439314 113439459 -83755973 - B1_Mus2 SINE Alu -1 146 1 5 1450 185 0 0 39 chr1 113439775 113439801 -83755631 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 5 1450 2811 26 17 0 chr1 113440321 113440666 -83754766 - L1Md_F3 LINE L1 -506 6078 5728 5 1450 4046 39 6 8 chr1 113440666 113441161 -83754271 + L1Md_F3 LINE L1 6077 6570 -14 5 1450 225 0 0 0 chr1 113441267 113441292 -83754140 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1450 459 165 9 35 chr1 113441490 113441603 -83753829 - L1Md_F2 LINE L1 0 6582 6473 5 1450 192 158 0 0 chr1 113442047 113442085 -83753347 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1450 2107 145 24 0 chr1 113442162 113442493 -83752939 - ORR1A1 LTR MaLR 0 346 8 5 1450 461 391 71 26 chr1 113444006 113444274 -83751158 - RMER15 LTR ERVL 0 575 296 5 1450 556 347 106 3 chr1 113444501 113444793 -83750639 - Tigger7 DNA MER2_type -2089 402 81 5 1450 2125 230 22 23 chr1 113444882 113445464 -83749968 + Lx2B LINE L1 6471 7000 0 5 1450 25 0 0 0 chr1 113445616 113445641 -83749791 + AT_rich Low_complexity Low_complexity 1 25 0 5 1450 1481 27 48 16 chr1 113447064 113447251 -83748181 + B2_Mm1t SINE B2 1 193 0 5 1450 29 0 0 0 chr1 113447524 113447553 -83747879 + AT_rich Low_complexity Low_complexity 1 29 0 5 1450 245 353 135 5 chr1 113447825 113448033 -83747399 - MER96B DNA hAT -182 235 1 5 1450 332 179 40 7 chr1 113448596 113448748 -83746684 + (TA)n Simple_repeat Simple_repeat 1 157 0 5 1450 317 347 0 0 chr1 113448783 113448878 -83746554 - Lx8 LINE L1 -258 7215 7121 5 1450 856 327 77 2 chr1 113449008 113449425 -83746007 - Lx8 LINE L1 -530 6943 6496 5 1450 1318 224 122 6 chr1 113449523 113449860 -83745572 + ORR1C1 LTR MaLR 1 376 -2 5 1450 233 208 0 0 chr1 113450205 113450253 -83745179 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 1450 1206 233 78 70 chr1 113450294 113450691 -83744741 + RMER17C LTR ERVK 1 400 -10 5 1450 452 158 12 0 chr1 113450674 113450756 -83744676 - RMER17C LTR ERVK -327 83 1 5 1450 26 0 0 0 chr1 113451111 113451137 -83744295 + AT_rich Low_complexity Low_complexity 1 26 0 5 1450 263 330 9 57 chr1 113452194 113452205 -83743227 + Lx9 LINE L1 6943 6952 -521 5 1450 260 351 30 30 chr1 113452205 113452340 -83743092 + B1_Mur2 SINE Alu 2 136 -13 5 1450 743 286 20 14 chr1 113452340 113452596 -83742836 + Lx9 LINE L1 6953 7337 -307 5 1450 398 48 48 0 chr1 113452613 113452676 -83742756 - L1Md_F2 LINE L1 0 6582 6517 5 1450 5172 34 0 1 chr1 113452676 113453320 -83742112 - L1Md_F2 LINE L1 -392 6190 5547 5 1450 408 259 64 64 chr1 113453301 113453614 -83741818 + Lx9 LINE L1 7331 7643 -1 5 1450 2237 232 85 21 chr1 113455188 113455751 -83739681 + RMER19C LTR ERVK 1 599 -12 5 1450 26 74 0 0 chr1 113455911 113455965 -83739467 + AT_rich Low_complexity Low_complexity 1 54 0 5 1450 336 333 152 15 chr1 113456439 113456637 -83738795 + ORR1D1 LTR MaLR 35 259 -115 5 1450 27 29 0 0 chr1 113456651 113456685 -83738747 + AT_rich Low_complexity Low_complexity 1 34 0 5 1450 1176 219 40 6 chr1 113456839 113457165 -83738267 - L1_Mur2 LINE L1 -5824 888 552 5 1450 678 169 64 1 chr1 113457232 113457409 -83738023 + L1_Mur3 LINE L1 1293 1488 -4392 5 1450 4828 152 44 4 chr1 113457405 113458225 -83737207 - Lx2 LINE L1 -336 6661 5809 5 1450 1665 163 6 22 chr1 113458226 113458539 -83736893 + Lx2 LINE L1 6683 6990 -7 5 1450 295 144 0 108 chr1 113458547 113458640 -83736792 + A-rich Low_complexity Low_complexity 1 83 0 5 1450 232 200 189 0 chr1 113458640 113458735 -83736697 + L1_Mur3 LINE L1 1470 1582 -4295 5 1450 32869 75 4 5 chr1 113458800 113464007 -83731425 + L1Md_F2 LINE L1 423 5585 -298 5 1450 7808 53 1 4 chr1 113464008 113464992 -83730440 + L1Md_F2 LINE L1 5587 6567 -15 5 1450 180 0 0 0 chr1 113464992 113465012 -83730420 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 5 1450 15808 186 26 13 chr1 113465034 113467012 -83728420 - L1_Mur1 LINE L1 -483 5403 3427 5 1450 488 30 0 15 chr1 113467012 113467079 -83728353 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 5 1450 15808 186 26 13 chr1 113467079 113467363 -83728069 - L1_Mur1 LINE L1 -2460 3426 3139 5 1450 183 42 0 0 chr1 113467363 113467387 -83728045 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1450 15808 186 26 13 chr1 113467387 113467450 -83727982 - L1_Mur1 LINE L1 -2748 3138 3061 5 1450 456 19 0 0 chr1 113467450 113467503 -83727929 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 1450 15808 186 26 13 chr1 113467503 113467666 -83727766 - L1_Mur1 LINE L1 -2826 3060 2885 5 1450 519 60 0 0 chr1 113467666 113467733 -83727699 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1450 15808 186 26 13 chr1 113467733 113468649 -83726783 - L1_Mur1 LINE L1 -3002 2884 1957 5 1450 1754 113 0 3 chr1 113468666 113468950 -83726482 - MusHAL1 LINE L1 -2119 593 311 5 1450 254 128 41 41 chr1 113468944 113468993 -83726439 - L1VL4 LINE L1 -6253 49 1 5 1450 2789 186 67 0 chr1 113469006 113469570 -83725862 - L1_Mur2 LINE L1 -152 5725 5124 5 1450 287 326 73 36 chr1 113469592 113469729 -83725703 - Tigger5 DNA MER2_type -2264 142 1 5 1450 722 269 18 0 chr1 113470256 113470427 -83725005 - MTEa LTR MaLR -199 180 7 5 1450 1416 54 11 5 chr1 113470444 113470629 -83724803 + B2_Mm2 SINE B2 2 187 -8 5 1450 38846 35 0 0 chr1 113471319 113476733 -83718699 - L1Md_T LINE L1 0 6582 1170 5 1450 5621 169 21 27 chr1 113476739 113478052 -83717380 - L1Md_T LINE L1 -5411 1205 99 5 1450 452 72 14 0 chr1 113478707 113478776 -83716656 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1450 21 36 0 0 chr1 113479175 113479203 -83716229 + AT_rich Low_complexity Low_complexity 1 28 0 5 1450 4908 142 5 39 chr1 113479313 113480303 -83715129 + L1VL4 LINE L1 157 1127 -2432 5 1450 10057 195 161 9 chr1 113480287 113480842 -83714590 + Lx9 LINE L1 2923 3493 -2390 5 1450 313 0 0 78 chr1 113480842 113480893 -83714539 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1450 10057 195 161 9 chr1 113480893 113481357 -83714075 + Lx9 LINE L1 3494 4059 -1824 5 1450 333 0 0 0 chr1 113481357 113481394 -83714038 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1450 10057 197 159 9 chr1 113481394 113482921 -83712511 + Lx9 LINE L1 4060 5861 -1783 5 1450 1081 82 0 0 chr1 113483381 113483527 -83711905 + L1_Mus2 LINE L1 5818 5963 -603 5 1450 5618 178 16 9 chr1 113483539 113484728 -83710704 + Lx LINE L1 5450 6642 -12 5 1450 696 24 0 0 chr1 113485331 113485413 -83710019 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1450 1721 75 0 4 chr1 113485420 113485649 -83709783 - L1_Mus1 LINE L1 -1 6566 6339 6 1450 225 191 42 21 chr1 113485685 113485733 -83709699 + B4A SINE B4 2 50 -242 6 1450 1776 124 63 63 chr1 113485906 113486225 -83709207 + ORR1A2 LTR MaLR 1 319 -8 6 1450 471 195 0 0 chr1 113486265 113486378 -83709054 + CT-rich Low_complexity Low_complexity 1 113 0 6 1450 33 97 0 0 chr1 113487181 113487284 -83708148 + AT_rich Low_complexity Low_complexity 1 103 0 6 1450 367 317 71 20 chr1 113488704 113489000 -83706432 - Lx9 LINE L1 -46 7598 7288 6 1450 3374 183 28 28 chr1 113489125 113490402 -83705030 + Lx4A LINE L1 530 1800 -4077 6 1450 6952 186 44 9 chr1 113490401 113492740 -83702692 + Lx4A LINE L1 4615 7049 -9 6 1450 2658 161 26 2 chr1 113492896 113493357 -83702075 - Lx3C LINE L1 -2 6974 6503 6 1450 490 316 12 26 chr1 113493370 113493655 -83701777 - RLTR6-int LTR ERV1 -2672 5106 4934 6 1450 658 360 55 50 chr1 113493906 113494666 -83700766 - MuLV-int LTR ERV1 -3158 4448 3685 6 1450 2423 121 3 11 chr1 113494667 113495035 -83700397 + L1_Mm LINE L1 5461 5825 -58 6 1450 1481 139 4 79 chr1 113495036 113495302 -83700130 - RLTR22_Mus LTR ERVK -20 1788 1543 6 1450 5893 78 2 7 chr1 113495548 113496363 -83699069 - RLTR22_Mus LTR ERVK -997 811 1 6 1450 21 0 0 0 chr1 113496592 113496613 -83698819 + AT_rich Low_complexity Low_complexity 1 21 0 6 1450 1019 268 54 113 chr1 113496931 113497542 -83697890 + RMER17A-int LTR ERVK 1108 1682 -46 6 1450 1481 192 102 9 chr1 113497571 113497886 -83697546 + RMER13A LTR ERVK 3 346 -514 6 1450 219 36 0 0 chr1 113498797 113498825 -83696607 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 1450 1141 69 0 7 chr1 113498829 113498975 -83696457 - B1_Mm SINE Alu 0 147 3 6 1450 608 221 99 26 chr1 113499710 113499942 -83695490 - Lx7 LINE L1 -1 7695 7447 6 1450 322 264 67 22 chr1 113500239 113500328 -83695104 + B1F1 SINE Alu 49 141 -8 1 1450 485 32 16 0 chr1 113500338 113500401 -83695031 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1450 261 285 13 46 chr1 113500592 113500743 -83694689 + L1MC LINE L1 3688 3833 -2313 3 1450 618 51 0 0 chr1 113500817 113500895 -83694537 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 4 1450 263 224 0 0 chr1 113500896 113500963 -83694469 - Lx6 LINE L1 -20 7440 7374 5 1450 30 0 0 0 chr1 113500970 113501000 -83694432 + AT_rich Low_complexity Low_complexity 1 30 0 6 1450 455 11 76 33 chr1 113501264 113501356 -83694076 + (CAAAAA)n Simple_repeat Simple_repeat 6 101 0 7 1450 1920 107 58 61 chr1 113501550 113501878 -83693554 + ORR1A2 LTR MaLR 1 327 0 8 1450 879 69 6 132 chr1 113501886 113502052 -83693380 + B1_Mm SINE Alu 2 146 -1 9 1450 2136 196 5 22 chr1 113502065 113502472 -83692960 + ORR1A2-int LTR MaLR 2 401 -1562 8 1450 514 230 43 7 chr1 113502488 113502628 -83692804 - Lx2B LINE L1 0 7000 6856 1 1450 3688 147 8 5 chr1 113502633 113503228 -83692204 + ORR1A2-int LTR MaLR 1365 1961 -2 8 1450 1389 169 4 0 chr1 113503230 113503455 -83691977 + ORR1A2 LTR MaLR 1 226 -101 8 1450 945 306 95 67 chr1 113503465 113504036 -83691396 - Lx9 LINE L1 -624 7020 6434 1 1450 237 280 72 44 chr1 113504150 113504374 -83691058 - L1MB7 LINE L1 -188 5996 5765 1 1450 27 73 0 0 chr1 113504612 113504667 -83690765 + AT_rich Low_complexity Low_complexity 1 55 0 1 1450 256 103 0 33 chr1 113505199 113505259 -83690173 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1450 1063 144 46 6 chr1 113505992 113506167 -83689265 + B2_Mm2 SINE B2 1 182 -13 1 1450 2286 60 0 0 chr1 113506184 113506468 -83688964 - L1_Mus1 LINE L1 0 6567 6284 1 1450 666 36 0 0 chr1 113506468 113506552 -83688880 + L1_Mus1 LINE L1 6202 6285 -282 1 1450 829 246 16 0 chr1 113507343 113507526 -83687906 - L1_Mur3 LINE L1 -240 5640 5455 1 1450 1238 60 12 0 chr1 113507526 113507694 -83687738 - BGLII LTR ERVK -251 170 1 1 1450 586 278 0 41 chr1 113507694 113507854 -83687578 - RMER19B LTR ERVK -577 325 173 1 1450 233 318 11 23 chr1 113507868 113507955 -83687477 - RMER19C LTR ERVK -332 279 194 2 1450 419 225 116 9 chr1 113507973 113508085 -83687347 - Lx7 LINE L1 -884 6812 6689 2 1450 451 107 0 35 chr1 113508133 113508220 -83687212 - MurERV4_19-int LTR ERVK 0 5780 5697 2 181 592 239 24 55 chr1 113508297 113508461 -83686971 + MurERV4_19-int LTR ERVK 5187 5345 -435 2 1451 7560 160 36 41 chr1 113508445 113508536 -83686896 - MurERV4_19-int LTR ERVK -609 5171 5085 2 1451 1404 78 5 10 chr1 113508536 113508730 -83686702 - B2_Mm1t SINE B2 0 193 1 2 1451 7560 160 36 41 chr1 113508730 113509470 -83685962 - MurERV4_19-int LTR ERVK -696 5084 4359 2 1451 501 62 0 0 chr1 113509470 113509535 -83685897 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1451 7560 160 36 41 chr1 113509535 113510021 -83685411 - MurERV4_19-int LTR ERVK -1422 4358 3871 2 1451 4390 27 2 0 chr1 113510021 113510532 -83684900 + L1Md_T LINE L1 6071 6582 0 2 1451 7560 160 36 41 chr1 113510532 113510805 -83684627 - MurERV4_19-int LTR ERVK -1910 3870 3588 2 1451 205 102 20 39 chr1 113510811 113510862 -83684570 + T-rich Low_complexity Low_complexity 5 54 0 2 1451 4044 58 0 0 chr1 113510882 113511379 -83684053 - L1_Mus1 LINE L1 -1 6566 6070 2 1451 1254 119 0 31 chr1 113511405 113511440 -83683992 - MurERV4_19-int LTR ERVK -2194 3586 3553 2 1451 1296 162 81 76 chr1 113511440 113511633 -83683799 - RMER17C LTR ERVK 0 410 190 2 1451 1064 36 18 24 chr1 113511633 113511803 -83683629 + (GAGAA)n Simple_repeat Simple_repeat 5 173 0 3 1451 1296 162 81 76 chr1 113511803 113512017 -83683415 - RMER17C LTR ERVK -221 189 1 2 1451 1254 119 0 31 chr1 113512017 113512172 -83683260 - MurERV4_19-int LTR ERVK -2228 3552 3402 2 1451 229 250 19 0 chr1 113512172 113512224 -83683208 - RLTR25A LTR ERVK -36 1067 1015 3 1451 6464 173 50 3 chr1 113512224 113513423 -83682009 - MurERV4_19-int LTR ERVK -2930 2850 1596 2 1451 1251 170 159 4 chr1 113513423 113513700 -83681732 + RMER6C LTR ERVK 371 690 0 3 1451 296 344 84 23 chr1 113515336 113515467 -83679965 - B1F1 SINE Alu -1 148 10 3 1451 21 0 0 0 chr1 113515467 113515488 -83679944 + AT_rich Low_complexity Low_complexity 1 21 0 3 1451 217 151 0 54 chr1 113515707 113515763 -83679669 + A-rich Low_complexity Low_complexity 1 53 0 3 1451 287 256 0 99 chr1 113516119 113516210 -83679222 - PB1D10 SINE Alu -8 109 28 3 1451 22 56 0 0 chr1 113516226 113516262 -83679170 + AT_rich Low_complexity Low_complexity 1 36 0 3 1451 12739 145 35 48 chr1 113516999 113520376 -83675056 + L1VL4 LINE L1 512 3859 -2027 3 1451 243 0 0 0 chr1 113520376 113520403 -83675029 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1451 12474 197 35 39 chr1 113520403 113520772 -83674660 + L1VL4 LINE L1 3860 4233 -1653 3 1451 810 21 0 0 chr1 113520769 113520865 -83674567 + L1Md_F2 LINE L1 5841 5936 -646 4 1451 961 137 0 0 chr1 113521718 113521864 -83673568 - B1_Mus1 SINE Alu 0 148 3 4 1451 22 0 0 0 chr1 113522013 113522035 -83673397 + AT_rich Low_complexity Low_complexity 1 22 0 4 1451 210 390 0 0 chr1 113522384 113522443 -83672989 - B1F2 SINE Alu -88 61 3 4 1451 23 0 0 0 chr1 113522840 113522863 -83672569 + AT_rich Low_complexity Low_complexity 1 23 0 4 1451 36363 51 12 4 chr1 113522921 113528366 -83667066 + L1Md_T LINE L1 128 5586 -297 4 1451 7947 57 0 0 chr1 113528366 113529362 -83666070 + L1Md_T LINE L1 5587 6582 0 4 1451 33 43 0 0 chr1 113529430 113529477 -83665955 + AT_rich Low_complexity Low_complexity 1 47 0 4 1451 860 332 97 25 chr1 113529506 113530034 -83665398 + Lx9 LINE L1 6451 7016 -628 4 1451 222 37 0 0 chr1 113530044 113530071 -83665361 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1451 28 91 0 0 chr1 113530357 113530434 -83664998 + AT_rich Low_complexity Low_complexity 1 77 0 4 1451 524 200 6 0 chr1 113531297 113531457 -83663975 + GA-rich Low_complexity Low_complexity 2 162 0 5 1451 622 367 92 26 chr1 113531481 113531619 -83663813 - Lx8 LINE L1 -169 7304 7157 5 1451 414 0 0 0 chr1 113531619 113531665 -83663767 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1451 622 367 92 26 chr1 113531665 113532094 -83663338 - Lx8 LINE L1 -317 7156 6701 5 1451 21 0 0 0 chr1 113532161 113532182 -83663250 + AT_rich Low_complexity Low_complexity 1 21 0 5 1451 489 315 80 24 chr1 113532921 113533127 -83662305 - MTD LTR MaLR -14 405 207 5 1451 3341 126 76 0 chr1 113533145 113533700 -83661732 - L1_Mus3 LINE L1 -6 6632 6036 5 1451 4590 119 3 0 chr1 113533700 113534575 -83660857 + L1_Mus3 LINE L1 5159 6037 -601 5 1451 289 333 109 49 chr1 113534576 113534759 -83660673 - MTC-int LTR MaLR -257 1001 808 5 1451 823 296 139 64 chr1 113534746 113534943 -83660489 - MTC-int LTR MaLR -685 573 489 5 1451 951 208 46 14 chr1 113534943 113535162 -83660270 - URR1A DNA MER1_type 0 226 1 5 1451 823 292 19 114 chr1 113535162 113535436 -83659996 - MTC-int LTR MaLR -770 488 155 5 1451 791 143 40 60 chr1 113535474 113535506 -83659926 - B1_Mus1 SINE Alu 0 148 116 5 1451 3418 62 0 7 chr1 113535506 113535943 -83659489 - L1_Mus1 LINE L1 -1 6566 6133 5 1451 791 143 40 60 chr1 113535943 113536059 -83659373 - B1_Mus1 SINE Alu -33 115 3 5 1451 248 259 86 7 chr1 113536059 113536085 -83659347 - ORR1B1-int LTR MaLR -856 653 617 6 1451 691 154 7 7 chr1 113536785 113536922 -83658510 + (TA)n Simple_repeat Simple_repeat 1 137 0 6 1451 21 0 0 0 chr1 113537242 113537263 -83658169 + AT_rich Low_complexity Low_complexity 1 21 0 6 1451 22 80 0 0 chr1 113537462 113537512 -83657920 + AT_rich Low_complexity Low_complexity 1 50 0 6 1451 7183 182 40 9 chr1 113538181 113539628 -83655804 - Lx LINE L1 -126 5757 4266 6 1451 6051 128 16 1 chr1 113539625 113540542 -83654890 + Lx LINE L1 5724 6654 0 6 1451 28 29 0 0 chr1 113540639 113540674 -83654758 + AT_rich Low_complexity Low_complexity 1 35 0 6 1451 273 29 0 0 chr1 113541191 113541225 -83654207 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6 1451 1288 97 21 5 chr1 113541225 113541402 -83654030 - B2_Mm2 SINE B2 -14 181 1 6 1451 437 0 19 0 chr1 113541466 113541519 -83653913 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 6 1451 25 65 0 0 chr1 113541625 113541671 -83653761 + AT_rich Low_complexity Low_complexity 1 46 0 6 1451 222 37 0 0 chr1 113541692 113541719 -83653713 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1451 24 32 0 0 chr1 113541772 113541803 -83653629 + AT_rich Low_complexity Low_complexity 1 31 0 7 1451 272 349 121 23 chr1 113541947 113542211 -83653221 + L1VL2 LINE L1 110 399 -5936 7 1451 2112 109 13 0 chr1 113542218 113542531 -83652901 - ORR1A2 LTR MaLR -10 317 1 7 1451 3255 203 75 16 chr1 113542531 113543651 -83651781 - ORR1A2-int LTR MaLR 0 1963 1 7 1451 824 166 7 0 chr1 113543658 113543803 -83651629 - ORR1A2 LTR MaLR -13 314 169 7 1451 6712 157 31 51 chr1 113543808 113546065 -83649367 + Lx LINE L1 4465 6652 -2 7 1451 6847 158 45 45 chr1 113546044 113547729 -83647703 + L1VL4 LINE L1 740 2430 -1129 7 1451 461 96 132 0 chr1 113547729 113547960 -83647472 - L1Md_F2 LINE L1 0 6582 6467 7 1451 5644 70 70 0 chr1 113547960 113548737 -83646695 - L1_Mm LINE L1 -476 5407 4577 7 1451 7758 187 42 21 chr1 113548730 113548948 -83646484 + L1_Mur1 LINE L1 2783 3005 -2881 7 1451 353 22 22 0 chr1 113548948 113548994 -83646438 + (CAA)n Simple_repeat Simple_repeat 2 48 0 7 1451 7758 187 42 21 chr1 113548994 113550347 -83645085 + L1_Mur1 LINE L1 3006 4393 -1493 7 1451 3182 30 2 86 chr1 113550347 113550587 -83644845 - MTA_Mm LTR MaLR 0 396 182 8 1451 1144 68 0 0 chr1 113550587 113550734 -83644698 - B1_Mus2 SINE Alu 0 147 1 8 1451 3182 30 2 86 chr1 113550734 113550925 -83644507 - MTA_Mm LTR MaLR -215 181 1 8 1451 7758 187 42 21 chr1 113550925 113551149 -83644283 + L1_Mur1 LINE L1 4394 4616 -1270 7 1451 5916 166 25 3 chr1 113551149 113552189 -83643243 + Lx2B LINE L1 5932 6994 -6 8 1451 447 70 0 14 chr1 113552194 113552266 -83643166 + L1Md_F2 LINE L1 6500 6570 -12 8 1451 225 0 0 0 chr1 113552320 113552345 -83643087 + (TAA)n Simple_repeat Simple_repeat 2 26 0 8 1451 369 293 57 62 chr1 113552526 113552737 -83642695 + B3 SINE B2 1 210 -6 8 1451 727 46 9 0 chr1 113553135 113553244 -83642188 - L1Md_F2 LINE L1 -3 6581 6472 8 1451 2296 55 0 10 chr1 113553246 113553541 -83641891 + L1Md_F2 LINE L1 5940 6231 -351 8 1451 960 0 0 0 chr1 113553540 113553650 -83641782 - L1Md_F2 LINE L1 -600 5982 5873 8 1451 4506 47 2 7 chr1 113553651 113554214 -83641218 + L1Md_F2 LINE L1 6011 6570 -12 8 1451 2636 74 3 8 chr1 113554231 113554599 -83640833 + L1Md_F2 LINE L1 6212 6577 -5 8 1451 22 0 0 0 chr1 113554599 113554621 -83640811 + AT_rich Low_complexity Low_complexity 1 22 0 8 1451 3188 26 42 0 chr1 113554746 113555126 -83640306 - MTA_Mm LTR MaLR 0 396 1 9 1451 348 312 155 59 chr1 113555321 113555947 -83639485 - Charlie6 DNA MER1_type -2043 1457 772 9 1451 280 233 105 70 chr1 113556422 113556593 -83638839 + L1M2 LINE L1 5553 5729 -571 9 1451 208 72 23 45 chr1 113557122 113557166 -83638266 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 9 1451 1649 128 0 36 chr1 113557596 113557872 -83637560 + Lx3A LINE L1 6701 6966 -15 9 1451 384 59 0 0 chr1 113557873 113557924 -83637508 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 9 1451 1144 82 0 0 chr1 113557935 113558082 -83637350 + B1_Mus2 SINE Alu 1 147 0 9 1451 29 60 0 0 chr1 113558370 113558420 -83637012 + AT_rich Low_complexity Low_complexity 1 50 0 9 1451 320 346 105 31 chr1 113558600 113558791 -83636641 + ID_B1 SINE B4 12 216 -8 9 1451 21 0 0 0 chr1 113558794 113558815 -83636617 + AT_rich Low_complexity Low_complexity 1 21 0 9 1451 436 313 122 85 chr1 113559166 113559594 -83635838 + MLT1B LTR MaLR 3 445 -22 1 1451 2504 62 43 3 chr1 113560078 113560403 -83635029 - ORR1A1 LTR MaLR -4 342 5 1 1451 447 92 0 0 chr1 113560412 113560477 -83634955 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1451 25 0 0 0 chr1 113560885 113560910 -83634522 + AT_rich Low_complexity Low_complexity 1 25 0 1 1451 266 311 85 0 chr1 113561002 113561108 -83634324 + ID_B1 SINE B4 78 192 -32 1 1451 221 366 12 12 chr1 113561153 113561236 -83634196 - ID4 SINE ID 0 83 1 1 1451 389 337 39 33 chr1 113561262 113561443 -83633989 - B3 SINE B2 -14 202 21 1 1451 3087 76 0 2 chr1 113561590 113561987 -83633445 - MTA_Mm LTR MaLR 0 396 1 1 1451 3203 127 78 11 chr1 113561987 113562606 -83632826 - MTA_Mm-int LTR MaLR 0 1258 528 1 1451 1351 53 0 0 chr1 113562568 113562739 -83632693 + MTA_Mm LTR MaLR 226 396 0 1 1451 5079 104 19 4 chr1 113562739 113563728 -83631704 + MTA_Mm-int LTR MaLR 1 1094 -4 1 1451 2983 77 13 3 chr1 113563733 113564123 -83631309 + MTA_Mm LTR MaLR 3 396 0 1 1451 5895 132 9 15 chr1 113564200 113565208 -83630224 - Lx LINE L1 0 6654 5653 1 1451 22578 175 60 66 chr1 113565337 113566545 -83628887 + L1_Mus3 LINE L1 218 1403 -4480 1 1451 2359 134 12 29 chr1 113566545 113566959 -83628473 - RLTR9E LTR ERVK 0 409 3 1 1451 22578 150 29 52 chr1 113566959 113569090 -83626342 + L1_Mus3 LINE L1 1404 3319 -2564 1 1451 4350 14 0 0 chr1 113569090 113569572 -83625860 + LTRIS_Mm LTR ERV1 1 482 0 1 1451 22578 141 35 40 chr1 113569572 113572790 -83622642 + L1_Mus3 LINE L1 3320 6638 0 1 1451 999 181 28 0 chr1 113573207 113573389 -83622043 - B2_Mm2 SINE B2 -7 188 2 1 1451 1518 244 87 30 chr1 113573390 113573860 -83621572 + Lx7 LINE L1 6870 7366 -330 1 1451 193 244 146 62 chr1 113574203 113574299 -83621133 + L3 LINE CR1 2032 2135 -2354 1 1451 459 0 0 0 chr1 113574961 113575012 -83620420 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1451 683 200 0 0 chr1 113575086 113575226 -83620206 + Lx2 LINE L1 2434 2573 -3313 1 1451 417 245 0 0 chr1 113575325 113575419 -83620013 + L1Md_F3 LINE L1 536 629 -5987 1 1451 34083 58 2 9 chr1 113575421 113580462 -83614970 + L1Md_F3 LINE L1 942 5928 -654 1 1451 3660 46 31 19 chr1 113580462 113580949 -83614483 + L1Md_F3 LINE L1 6092 6584 0 1 1451 9137 189 31 7 chr1 113580949 113582223 -83613209 + Lx2 LINE L1 2563 3841 -2045 1 1451 234 0 0 0 chr1 113582223 113582249 -83613183 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1451 9137 189 31 7 chr1 113582249 113582685 -83612747 + Lx2 LINE L1 3842 4313 -1573 1 1451 3141 43 2 39 chr1 113582685 113583094 -83612338 - MTA_Mm LTR MaLR 0 396 3 1 1451 9137 189 31 7 chr1 113583094 113583412 -83612020 + Lx2 LINE L1 4314 4640 -1246 1 1451 6632 169 57 10 chr1 113583410 113585029 -83610403 + Lx2 LINE L1 5309 6997 0 1 1451 212 114 0 43 chr1 113585695 113585741 -83609691 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1 1451 249 337 36 98 chr1 113585742 113585854 -83609578 - RSINE1 SINE B4 -4 161 57 1 1451 1119 55 7 40 chr1 113586825 113586977 -83608455 + B1_Mus2 SINE Alu 1 147 0 1 1451 1403 222 98 14 chr1 113586996 113587158 -83608274 - RMER17C LTR ERVK -13 397 234 1 1451 345 47 0 0 chr1 113587158 113587201 -83608231 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1451 1403 222 98 14 chr1 113587201 113587404 -83608028 - RMER17C LTR ERVK -177 233 2 1 1451 1586 124 63 17 chr1 113587407 113587694 -83607738 - RMER17C-int LTR ERVK -2 3236 2937 1 1451 2835 12 3 0 chr1 113587817 113588138 -83607294 + RLTRETN_Mm LTR ERVK 1 322 0 1 1451 39706 20 6 6 chr1 113588138 113592982 -83602450 + MMETn-int LTR ERVK 1 4844 0 1 1451 2847 9 3 0 chr1 113592982 113593303 -83602129 + RLTRETN_Mm LTR ERVK 1 322 0 1 1451 182 225 0 0 chr1 113593640 113593680 -83601752 + L3 LINE CR1 3552 3591 -898 1 1451 585 40 0 0 chr1 113593836 113593912 -83601520 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1451 23 33 0 0 chr1 113594152 113594182 -83601250 + AT_rich Low_complexity Low_complexity 1 30 0 1 1451 582 28 0 0 chr1 113596320 113596392 -83599040 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1451 185 0 40 0 chr1 113596656 113596681 -83598751 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1451 22 0 0 0 chr1 113597523 113597545 -83597887 + AT_rich Low_complexity Low_complexity 1 22 0 1 1451 450 137 0 0 chr1 113597642 113597737 -83597695 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1451 21 57 0 0 chr1 113597898 113597933 -83597499 + AT_rich Low_complexity Low_complexity 1 35 0 1 1451 21 36 0 0 chr1 113598011 113598039 -83597393 + AT_rich Low_complexity Low_complexity 1 28 0 1 1451 493 66 0 95 chr1 113598180 113598264 -83597168 - MTB LTR MaLR -129 271 196 1 1451 1149 69 0 0 chr1 113598226 113598371 -83597061 + MTB LTR MaLR 256 400 0 1 1451 6493 112 21 78 chr1 113598373 113599536 -83595896 + MTB-int LTR MaLR 3 1098 0 1 1451 2404 93 24 0 chr1 113599538 113599872 -83595560 + MTB LTR MaLR 3 344 -56 1 1451 2084 98 3 69 chr1 113599872 113600221 -83595211 + IAPLTR1a_Mm LTR ERVK 1 326 -11 1 1451 55428 11 4 2 chr1 113600222 113606691 -83588741 + IAPEz-int LTR ERVK 1 6481 0 1 1451 2128 97 3 68 chr1 113606691 113607046 -83588386 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 1451 488 48 0 0 chr1 113607048 113607110 -83588322 + MTB LTR MaLR 339 400 0 1 1451 22 35 0 0 chr1 113607835 113607864 -83587568 + AT_rich Low_complexity Low_complexity 1 29 0 1 1451 1656 307 19 92 chr1 113607882 113608839 -83586593 + Lx9 LINE L1 6320 7206 -438 1 1451 202 297 0 0 chr1 113608928 113608992 -83586440 + CT-rich Low_complexity Low_complexity 1 64 0 1 1451 483 18 0 0 chr1 113609112 113609168 -83586264 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1 1451 570 316 47 0 chr1 113609795 113609966 -83585466 - ORR1D2 LTR MaLR -190 180 2 1 1451 271 175 70 0 chr1 113610381 113610438 -83584994 + ORR1E LTR MaLR 1 61 -298 1 1451 183 42 0 0 chr1 113610464 113610488 -83584944 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1451 551 390 32 21 chr1 113610540 113610823 -83584609 - B4A SINE B4 0 292 7 1 1451 14654 69 4 0 chr1 113610884 113613533 -83581899 - L1Md_F2 LINE L1 -1 6581 3922 1 1451 26278 86 10 0 chr1 113613531 113615081 -83580351 + L1Md_F2 LINE L1 1900 3454 -2429 1 1451 3002 61 0 20 chr1 113615081 113615481 -83579951 + L1Md_F2 LINE L1 6191 6582 0 1 1451 297 0 0 0 chr1 113615491 113615524 -83579908 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 1451 26278 86 10 0 chr1 113615524 113617613 -83577819 + L1Md_F2 LINE L1 3476 5583 -300 1 1451 7862 52 4 3 chr1 113617614 113618607 -83576825 + L1Md_F2 LINE L1 5587 6580 -2 1 1451 204 97 0 0 chr1 113618643 113618674 -83576758 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1451 292 54 0 0 chr1 113618674 113618711 -83576721 + ORR1A3 LTR MaLR 290 326 0 1 1451 1852 218 11 5 chr1 113618938 113619588 -83575844 + Lx5 LINE L1 989 1641 -4236 1 1451 5170 140 18 27 chr1 113619588 113620468 -83574964 + Lx3A LINE L1 6094 6966 -15 1 1451 405 0 0 0 chr1 113620468 113620513 -83574919 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 1451 1799 245 237 16 chr1 113620521 113620756 -83574676 + Lx5 LINE L1 1645 2060 -3820 1 1451 243 0 0 0 chr1 113620756 113620783 -83574649 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1451 1799 186 86 13 chr1 113620783 113621216 -83574216 + Lx5 LINE L1 2061 2188 -3692 1 1451 1777 165 6 13 chr1 113621465 113621778 -83573654 - RLTR10E LTR ERVK 0 311 1 1 1451 5846 215 60 4 chr1 113622015 113623821 -83571611 + Lx5 LINE L1 5146 7047 -3 1 1451 300 106 76 0 chr1 113623974 113624040 -83571392 + Lx3A LINE L1 6910 6980 -1 1 1451 260 49 49 0 chr1 113625077 113625118 -83570314 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1451 869 154 0 0 chr1 113625120 113625256 -83570176 - B1_Mus1 SINE Alu -12 136 1 1 1451 1188 68 0 0 chr1 113625385 113625531 -83569901 + B1_Mm SINE Alu 1 146 -1 1 1451 277 123 31 0 chr1 113625531 113625596 -83569836 + (CAAA)n Simple_repeat Simple_repeat 1 67 0 1 1451 23 0 0 0 chr1 113625837 113625860 -83569572 + AT_rich Low_complexity Low_complexity 1 23 0 1 1451 603 40 0 0 chr1 113626505 113626579 -83568853 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1451 511 163 0 0 chr1 113626591 113626683 -83568749 + Lx2B LINE L1 4308 4399 -1478 1 1451 2292 80 171 3 chr1 113626683 113627022 -83568410 + MTA_Mm LTR MaLR 1 396 0 1 1451 5969 158 67 32 chr1 113627022 113628111 -83567321 + MTA_Mm-int LTR MaLR 3 1155 -103 1 1451 413 145 0 0 chr1 113628111 113628187 -83567245 - L1Md_F2 LINE L1 -5 6577 6502 1 1451 5969 158 67 32 chr1 113628187 113628311 -83567121 + MTA_Mm-int LTR MaLR 1156 1258 0 1 1451 2407 78 147 9 chr1 113628311 113628659 -83566773 + MTA_Mm LTR MaLR 1 396 0 1 1451 5810 167 116 35 chr1 113628659 113630383 -83565049 + Lx2B LINE L1 4395 6263 -737 1 1451 515 43 0 14 chr1 113630426 113630497 -83564935 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1451 25 65 0 0 chr1 113630703 113630749 -83564683 + AT_rich Low_complexity Low_complexity 1 46 0 1 1451 3053 162 27 22 chr1 113630749 113631304 -83564128 - Lx3B LINE L1 -1 6972 6415 1 1451 1536 250 148 39 chr1 113631305 113631825 -83563607 - RMER19B LTR ERVK -18 884 308 1 1451 294 152 15 15 chr1 113631845 113631912 -83563520 + Lx5 LINE L1 6984 7050 0 1 1451 810 68 0 0 chr1 113631958 113632076 -83563356 + (TG)n Simple_repeat Simple_repeat 2 119 0 1 1451 294 331 118 0 chr1 113632078 113632205 -83563227 - RSINE1 SINE B4 -19 146 5 1 1451 1878 114 0 25 chr1 113634737 113635053 -83560379 - Lx3C LINE L1 -730 6246 5939 1 1451 3127 149 50 7 chr1 113635053 113635399 -83560033 + Lx3C LINE L1 6411 6766 -210 1 1451 624 91 0 0 chr1 113635399 113635487 -83559945 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1451 3127 149 50 7 chr1 113635487 113635681 -83559751 + Lx3C LINE L1 6767 6974 -2 1 1451 228 291 12 0 chr1 113635880 113635966 -83559466 - L1_Rod LINE L1 -24 5823 5737 1 1451 399 41 0 0 chr1 113636171 113636220 -83559212 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1451 200 306 0 0 chr1 113636241 113636303 -83559129 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1451 261 83 0 0 chr1 113637293 113637329 -83558103 + (ATG)n Simple_repeat Simple_repeat 1 36 0 1 1451 258 32 0 0 chr1 113637593 113637624 -83557808 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1451 3911 130 56 3 chr1 113637629 113638270 -83557162 - Lx3A LINE L1 0 6981 6307 1 1451 395 371 54 5 chr1 113638270 113638473 -83556959 - B4A SINE B4 -60 232 20 1 1451 211 254 14 27 chr1 113638711 113638784 -83556648 + T-rich Low_complexity Low_complexity 4 75 0 1 1451 416 345 50 5 chr1 113638785 113638983 -83556449 - ID_B1 SINE B4 -17 207 1 1 181 336 329 75 67 chr1 113639103 113639448 -83555984 - ORR1E LTR MaLR -11 348 1 1 1452 590 279 28 28 chr1 113640338 113640589 -83554843 + L1_Mur3 LINE L1 3629 3881 -2265 1 1452 335 291 69 21 chr1 113641187 113641331 -83554101 - RSINE1 SINE B4 -10 155 5 1 1452 2797 217 34 56 chr1 113641554 113642266 -83553166 + RLTR40 LTR ERVK 122 817 0 1 1452 267 318 113 64 chr1 113642598 113642739 -83552693 + B1F SINE Alu 1 148 -1 1 1452 279 0 0 0 chr1 113643785 113643816 -83551616 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1452 4829 75 0 0 chr1 113644562 113645193 -83550239 + L1Md_T LINE L1 5952 6582 0 1 1452 4047 179 129 80 chr1 113645238 113645479 -83549953 - RLTR25A LTR ERVK 0 1103 883 1 1452 333 0 0 0 chr1 113645479 113645516 -83549916 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1452 4047 179 129 80 chr1 113645516 113645631 -83549801 - RLTR25A LTR ERVK -221 882 771 1 1452 6024 61 3 6 chr1 113645631 113646411 -83549021 - L1Md_F2 LINE L1 0 6582 5806 1 1452 4047 179 129 80 chr1 113646411 113647104 -83548328 - RLTR25A LTR ERVK -333 770 1 1 1452 3625 74 23 35 chr1 113647878 113648396 -83547036 - RLTR1B LTR ERV1 0 512 1 1 1452 4351 67 36 39 chr1 113648396 113649006 -83546426 - RLTR1B-int LTR ERV1 0 3299 2692 1 1452 10944 76 14 31 chr1 113649004 113650864 -83544568 - RLTR1B-int LTR ERV1 -2032 3031 783 1 1452 222 196 0 0 chr1 113650875 113650921 -83544511 + G-rich Low_complexity Low_complexity 1 46 0 1 1452 2029 147 46 146 chr1 113650997 113651964 -83543468 - RLTR1B-int LTR ERV1 -2518 781 1 1 1452 3161 91 54 64 chr1 113651964 113652154 -83543278 - RLTR1B LTR ERV1 0 512 322 1 1452 186 43 0 0 chr1 113652154 113652177 -83543255 + (CTGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1452 3161 91 54 64 chr1 113652177 113652326 -83543106 - RLTR1B LTR ERV1 -191 321 168 1 1452 4552 32 55 0 chr1 113652326 113652886 -83542546 - L1Md_F3 LINE L1 -14 6570 5980 1 1452 3161 91 54 64 chr1 113652886 113653062 -83542370 - RLTR1B LTR ERV1 -345 167 3 1 1452 4633 73 0 13 chr1 113653071 113653666 -83541766 - LTRIS_Mus LTR ERV1 0 587 1 2 1452 946 248 30 34 chr1 113653666 113653908 -83541524 - MTD LTR MaLR -110 309 66 2 1452 294 272 43 21 chr1 113653908 113654002 -83541430 - RLTR23 LTR ERV1 0 430 335 2 1452 321 330 17 17 chr1 113654526 113654613 -83540819 + RMER17C LTR ERVK 1 86 -324 2 1452 642 82 0 0 chr1 113654613 113654711 -83540721 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1452 364 232 20 29 chr1 113654711 113654813 -83540619 + RMER17C LTR ERVK 216 316 -94 2 1452 243 0 0 0 chr1 113654985 113655012 -83540420 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1452 844 330 22 40 chr1 113655747 113656117 -83539315 - MuRRS4-int LTR ERV1 -1033 4030 3668 2 1452 300 356 0 0 chr1 113656263 113656378 -83539054 - RLTR4_MM-int LTR ERV1 -3296 4305 4191 2 1452 359 353 12 6 chr1 113656699 113656870 -83538562 - MuRRS4-int LTR ERV1 -2508 2555 2384 2 1452 388 283 49 28 chr1 113657100 113657242 -83538190 - RLTR23 LTR ERV1 0 430 286 2 1452 262 197 29 29 chr1 113657619 113657687 -83537745 - MTD LTR MaLR -347 72 5 2 1452 1131 237 70 108 chr1 113658336 113658734 -83536698 - ORR1C2 LTR MaLR 0 384 2 2 1452 373 294 136 12 chr1 113659531 113659693 -83535739 - B3A SINE B2 -16 182 1 2 1452 827 254 5 5 chr1 113659760 113659950 -83535482 + RMER15 LTR ERVL 1 190 -385 2 1452 556 93 0 0 chr1 113659957 113660032 -83535400 + Lx4B LINE L1 5802 5876 -1182 2 1452 1271 133 5 42 chr1 113660031 113660243 -83535189 + Lx4B LINE L1 6503 6706 -352 2 1452 3896 183 84 4 chr1 113660535 113661293 -83534139 - Lx4A LINE L1 0 7058 6240 2 1452 406 254 44 112 chr1 113661619 113661779 -83533653 - B1F1 SINE Alu 0 149 1 2 1452 839 116 13 0 chr1 113662102 113662257 -83533175 - Lx3_Mus LINE L1 0 7009 6853 2 1452 270 275 37 0 chr1 113664559 113664668 -83530764 - L1_Mur3 LINE L1 -3453 2427 2315 2 1452 446 128 11 0 chr1 113664768 113664862 -83530570 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 1452 183 129 0 0 chr1 113664864 113664895 -83530537 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1452 11356 147 12 43 chr1 113665601 113667314 -83528118 + L1VL4 LINE L1 565 2157 -3726 2 1452 905 127 0 0 chr1 113667314 113667448 -83527984 + B1_Mus1 SINE Alu 1 134 -14 2 1452 450 0 0 0 chr1 113667451 113667501 -83527931 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1452 11356 112 18 35 chr1 113667501 113668996 -83526436 + L1VL4 LINE L1 2156 3632 -282 2 1452 642 223 6 19 chr1 113669015 113669175 -83526257 + MurERV4-int LTR ERVK 4822 4979 -281 2 1452 723 81 0 0 chr1 113669178 113669277 -83526155 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1452 23326 65 1 1 chr1 113669311 113673062 -83522370 - L1Md_F2 LINE L1 -12 6570 2821 2 1452 2988 57 23 5 chr1 113673068 113673455 -83521977 - MTA_Mm LTR MaLR 0 396 3 2 1452 7236 108 9 6 chr1 113673457 113674551 -83520881 - MTA_Mm-int LTR MaLR 0 1098 2 2 1452 2967 89 2 2 chr1 113674552 113674946 -83520486 - MTA_Mm LTR MaLR 0 396 3 2 1452 339 25 0 0 chr1 113674950 113674990 -83520442 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1452 186 143 0 0 chr1 113675054 113675089 -83520343 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 2 1452 4939 168 30 7 chr1 113675353 113676247 -83519185 - Lx2 LINE L1 -2 6995 6081 2 1452 1487 286 33 44 chr1 113676253 113676867 -83518565 + Lx9 LINE L1 6867 7473 -171 2 1452 28 0 0 0 chr1 113676976 113677004 -83518428 + AT_rich Low_complexity Low_complexity 1 28 0 2 1452 447 110 36 9 chr1 113677064 113677174 -83518258 + T-rich Low_complexity Low_complexity 3 115 0 2 1452 203 0 0 36 chr1 113677172 113677200 -83518232 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1452 1002 61 75 8 chr1 113677200 113677333 -83518099 - B1_Mus1 SINE Alu -2 146 5 2 1452 392 0 0 20 chr1 113677762 113677811 -83517621 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1452 364 382 18 0 chr1 113677841 113677951 -83517481 - B3A SINE B2 -52 146 35 2 1452 36 0 0 0 chr1 113677956 113677992 -83517440 + AT_rich Low_complexity Low_complexity 1 36 0 2 1452 1556 199 6 0 chr1 113677992 113678303 -83517129 - Lx LINE L1 0 6654 6342 2 1452 5040 96 35 12 chr1 113679423 113680173 -83515259 + L1_Mus3 LINE L1 5872 6638 0 2 1452 23 33 0 0 chr1 113680259 113680289 -83515143 + AT_rich Low_complexity Low_complexity 1 30 0 2 1452 1329 211 11 8 chr1 113680406 113680673 -83514759 + RMER6C LTR ERVK 423 690 0 2 1452 2438 224 67 16 chr1 113680673 113681373 -83514059 + L1_Mur2 LINE L1 2358 3093 -2784 2 1452 2155 232 35 14 chr1 113681381 113681396 -83514036 - Lx5 LINE L1 0 7050 7038 2 1452 252 0 0 0 chr1 113681396 113681424 -83514008 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 2 1452 2155 232 35 14 chr1 113681424 113681915 -83513517 - Lx5 LINE L1 -13 7037 6533 2 1452 22 0 0 0 chr1 113682389 113682411 -83513021 + AT_rich Low_complexity Low_complexity 1 22 0 2 1452 692 198 120 108 chr1 113682440 113682887 -83512545 + RLTR6_Mm LTR ERV1 9 584 -70 2 1452 549 395 52 36 chr1 113683039 113683401 -83512031 - MTE-int LTR MaLR -217 1363 996 2 1452 27 0 0 0 chr1 113683677 113683704 -83511728 + AT_rich Low_complexity Low_complexity 1 27 0 2 1452 619 270 106 30 chr1 113683764 113684028 -83511404 + Lx8 LINE L1 7189 7472 -1 2 1452 180 152 0 0 chr1 113684376 113684409 -83511023 + T-rich Low_complexity Low_complexity 5 37 0 2 1452 25 31 0 0 chr1 113685050 113685082 -83510350 + AT_rich Low_complexity Low_complexity 1 32 0 2 1452 329 316 167 93 chr1 113685429 113685509 -83509923 - B4A SINE B4 -13 279 208 2 1452 2255 174 120 27 chr1 113685509 113685992 -83509440 - RLTR11A LTR ERVK 0 528 1 2 1452 329 316 167 93 chr1 113685992 113686169 -83509263 - B4A SINE B4 -85 207 3 2 1452 1039 119 11 0 chr1 113686940 113687116 -83508316 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 1452 198 0 0 0 chr1 113687116 113687138 -83508294 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1452 342 45 0 0 chr1 113687138 113687182 -83508250 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1452 1104 167 25 0 chr1 113687662 113687860 -83507572 + Lx LINE L1 6444 6646 -8 2 1452 29 47 0 0 chr1 113687860 113687903 -83507529 + AT_rich Low_complexity Low_complexity 1 43 0 2 1452 3097 73 2 5 chr1 113687926 113688327 -83507105 + MTB LTR MaLR 1 400 0 2 1452 272 336 39 95 chr1 113688422 113688705 -83506727 + Lx8 LINE L1 6737 7003 -470 2 1452 422 277 40 6 chr1 113688734 113688894 -83506538 + MT2A LTR ERVL 196 481 -120 2 1452 232 312 10 0 chr1 113688896 113688992 -83506440 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1452 1281 321 22 39 chr1 113689067 113689602 -83505830 - Lx9 LINE L1 -616 7028 6503 2 1452 495 107 0 0 chr1 113689704 113689779 -83505653 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1452 3250 227 24 55 chr1 113689799 113690662 -83504770 - RMER13B LTR ERVK -66 842 6 2 1452 252 0 0 0 chr1 113690663 113690691 -83504741 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1452 41 21 0 0 chr1 113691126 113691174 -83504258 + AT_rich Low_complexity Low_complexity 1 48 0 2 1452 617 314 31 16 chr1 113691444 113691635 -83503797 - B3A SINE B2 -4 194 1 2 1452 753 340 5 5 chr1 113691751 113691946 -83503486 + ORR1D2 LTR MaLR 3 197 -173 2 1452 308 263 66 25 chr1 113693393 113693514 -83501918 - L1MC3 LINE L1 -738 7047 6922 2 1452 3668 134 23 10 chr1 113693791 113694407 -83501025 - Lx3C LINE L1 -755 6221 5598 2 1452 1737 145 11 3 chr1 113694405 113694688 -83500744 + Lx3C LINE L1 6222 6506 -470 2 1452 1741 107 4 0 chr1 113694660 113694903 -83500529 - Lx3A LINE L1 -297 6684 6441 2 1452 1261 109 0 120 chr1 113694914 113695164 -83500268 - L1_Mur1 LINE L1 -1460 4426 4207 2 1452 379 205 39 0 chr1 113696036 113696114 -83499318 - RLTR23 LTR ERV1 -337 93 13 2 1452 1468 200 7 20 chr1 113696931 113697227 -83498205 + Lx2B LINE L1 6095 6386 -614 2 1452 3656 87 0 4 chr1 113697227 113697744 -83497688 + L1Md_F2 LINE L1 6070 6582 0 2 1452 791 116 16 0 chr1 113697851 113697980 -83497452 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 2 1452 849 179 12 6 chr1 113697982 113698145 -83497287 + Lx3C LINE L1 6373 6536 -440 2 1452 797 90 0 69 chr1 113698140 113698207 -83497225 + Lx3B LINE L1 5725 5787 -1186 2 1452 4847 69 13 2 chr1 113698207 113698843 -83496589 + L1Md_F2 LINE L1 5939 6581 -1 2 1452 797 90 0 69 chr1 113698843 113698906 -83496526 + Lx3B LINE L1 5788 5846 -1127 2 1452 242 263 0 0 chr1 113698904 113698961 -83496471 - Lx7 LINE L1 -834 6862 6806 2 1452 1536 181 0 0 chr1 113699024 113699290 -83496142 - L1_Mm LINE L1 -330 5553 5288 2 1452 849 255 5 31 chr1 113699697 113699731 -83495701 - Lx7 LINE L1 -1891 5805 5778 2 1452 4150 186 27 3 chr1 113699731 113700503 -83494929 - Lx LINE L1 0 6654 5864 2 1452 3542 180 30 1 chr1 113700503 113701165 -83494267 - Lx LINE L1 -104 5779 5099 2 1452 29 0 0 0 chr1 113701165 113701194 -83494238 + AT_rich Low_complexity Low_complexity 1 29 0 2 1452 906 102 58 0 chr1 113701194 113701331 -83494101 - B1_Mus1 SINE Alu 0 148 4 2 1452 387 244 54 94 chr1 113701197 113701346 -83494086 - B4 SINE B4 -69 223 81 2 1452 21 0 0 0 chr1 113701378 113701399 -83494033 + AT_rich Low_complexity Low_complexity 1 21 0 2 1452 4648 46 0 2 chr1 113702454 113703020 -83492412 + L1Md_F2 LINE L1 6004 6568 -14 2 1452 1697 101 97 10 chr1 113703840 113704130 -83491302 - L1Md_T LINE L1 0 6582 6268 2 1452 3390 198 291 2 chr1 113704395 113705520 -83489912 - L1_Mur2 LINE L1 -767 5110 3661 2 1452 468 0 0 0 chr1 113705521 113705573 -83489859 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1452 3215 179 35 3 chr1 113705583 113706179 -83489253 + L1_Mur1 LINE L1 5189 5803 -83 2 1452 1595 136 51 4 chr1 113706169 113706200 -83489232 - Lx3_Mus LINE L1 -685 6324 6294 2 1452 573 15 0 0 chr1 113706200 113706266 -83489166 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1452 1595 136 51 4 chr1 113706266 113706508 -83488924 - Lx3_Mus LINE L1 -716 6293 6039 2 1452 2750 131 0 0 chr1 113706508 113706904 -83488528 + Lx3_Mus LINE L1 6318 6713 -296 2 1452 357 43 0 0 chr1 113707063 113707110 -83488322 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1452 1710 258 67 5 chr1 113707199 113707619 -83487813 - MT2A LTR ERVL -80 453 8 2 1452 3920 175 47 39 chr1 113708273 113709069 -83486363 - RLTR13D1 LTR ERVK 0 806 5 2 1452 357 43 0 0 chr1 113709948 113709995 -83485437 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1452 305 351 53 0 chr1 113710002 113710116 -83485316 - RSINE1 SINE B4 -44 121 2 2 1452 4168 168 7 8 chr1 113710299 113711020 -83484412 - Lx2 LINE L1 -1 6996 6277 3 1452 16525 181 33 10 chr1 113711704 113715471 -83479961 - Lx2 LINE L1 -716 6281 2428 3 1452 427 200 56 0 chr1 113715504 113715594 -83479838 + PB1D9 SINE Alu 26 120 0 3 1452 446 266 14 72 chr1 113716049 113716187 -83479245 + RLTR23 LTR ERV1 13 142 -288 3 1452 9804 183 43 22 chr1 113716342 113718118 -83477314 - L1_Mur2 LINE L1 -734 5143 3323 3 1452 279 0 0 0 chr1 113718118 113718149 -83477283 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1452 9804 183 43 22 chr1 113718149 113718594 -83476838 - L1_Mur2 LINE L1 -2555 3322 2876 3 1452 2414 173 19 3 chr1 113719137 113719653 -83475779 + Lx5 LINE L1 5539 6071 -979 3 1452 1416 268 51 29 chr1 113719641 113720053 -83475379 + Lx5 LINE L1 6587 7007 -43 3 1452 519 17 0 0 chr1 113720053 113720113 -83475319 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1452 396 0 0 0 chr1 113720113 113720156 -83475276 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1452 1707 67 0 0 chr1 113720309 113720533 -83474899 + L1Md_F3 LINE L1 5757 5980 -604 3 1452 3844 183 32 45 chr1 113720533 113722283 -83473149 - MMETn-int LTR ERVK -3321 4085 2356 3 1452 207 0 0 0 chr1 113722283 113722306 -83473126 + (CATG)n Simple_repeat Simple_repeat 2 24 0 3 1452 3762 134 44 3 chr1 113722306 113722587 -83472845 - MMETn-int LTR ERVK -3664 3742 3444 3 1452 935 128 6 24 chr1 113722946 113723114 -83472318 - RLTR13D1 LTR ERVK -156 650 486 3 1452 2647 164 30 14 chr1 113723114 113723608 -83471824 - MMETn-int LTR ERVK -4409 2997 2496 3 1452 4001 193 47 77 chr1 113723635 113724730 -83470702 - MMETn-int LTR ERVK -3675 1169 108 3 1452 310 255 19 47 chr1 113724765 113724872 -83470560 - MMETn-int LTR ERVK -4740 104 1 3 1452 423 174 84 32 chr1 113724873 113724968 -83470464 - RLTR9C LTR ERVK 0 393 294 3 1452 5770 66 4 3 chr1 113724968 113725715 -83469717 - L1Md_F2 LINE L1 0 5883 5136 3 1452 5290 68 13 3 chr1 113725715 113726418 -83469014 + L1Md_F2 LINE L1 5870 6579 -3 3 1452 1161 220 41 72 chr1 113726431 113726749 -83468683 - RLTR9C LTR ERVK -85 308 1 3 1452 791 308 148 7 chr1 113726753 113727044 -83468388 + MTD LTR MaLR 74 405 -14 3 1452 276 283 84 94 chr1 113727167 113727358 -83468074 + MLT1D LTR MaLR 317 505 0 3 1452 462 290 209 29 chr1 113729041 113729634 -83465798 + Charlie10 DNA MER1_type 1922 2621 -201 3 1452 593 223 0 0 chr1 113729648 113729751 -83465681 - B3 SINE B2 -97 119 17 3 1452 538 298 18 24 chr1 113729929 113730094 -83465338 + RSINE1 SINE B4 2 165 0 3 1452 557 209 0 35 chr1 113730217 113730361 -83465071 - Lx4B LINE L1 -5 7053 6915 3 1452 341 339 35 24 chr1 113730468 113730637 -83464795 + L3 LINE CR1 3533 3703 -786 3 1452 23 0 0 0 chr1 113730732 113730755 -83464677 + AT_rich Low_complexity Low_complexity 1 23 0 3 1452 6751 142 16 5 chr1 113731126 113732733 -83462699 + Lx LINE L1 5030 6653 -1 3 1452 287 253 50 50 chr1 113732738 113732838 -83462594 - ORR1C2 LTR MaLR -176 208 109 3 1452 22 0 0 0 chr1 113732860 113732882 -83462550 + AT_rich Low_complexity Low_complexity 1 22 0 3 1452 1050 116 0 26 chr1 113732958 113733109 -83462323 - B1_Mus2 SINE Alu 0 147 1 3 1452 216 0 0 0 chr1 113733226 113733250 -83462182 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1452 239 338 25 0 chr1 113733293 113733373 -83462059 + B4A SINE B4 197 278 -14 3 1452 22 0 0 0 chr1 113733784 113733806 -83461626 + AT_rich Low_complexity Low_complexity 1 22 0 3 1452 387 0 0 0 chr1 113733960 113734003 -83461429 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1452 207 0 0 0 chr1 113734163 113734186 -83461246 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1452 894 45 0 0 chr1 113734357 113734468 -83460964 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 1452 22 0 0 0 chr1 113734542 113734564 -83460868 + AT_rich Low_complexity Low_complexity 1 22 0 3 1452 449 146 54 6 chr1 113734678 113734844 -83460588 + (TA)n Simple_repeat Simple_repeat 1 174 0 3 1452 358 371 35 14 chr1 113736105 113736250 -83459182 + B3 SINE B2 2 149 -67 3 1452 198 0 0 0 chr1 113736272 113736294 -83459138 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1452 24 0 0 0 chr1 113736443 113736467 -83458965 + AT_rich Low_complexity Low_complexity 1 24 0 3 1452 2232 129 16 11 chr1 113736560 113736928 -83458504 - Lx2 LINE L1 -1 6996 6627 3 1452 23 92 0 0 chr1 113739277 113739342 -83456090 + AT_rich Low_complexity Low_complexity 1 65 0 3 1452 1274 75 17 0 chr1 113739390 113739563 -83455869 + B2_Mm2 SINE B2 4 179 -16 3 1452 710 110 195 0 chr1 113739565 113739683 -83455749 + B1_Mus1 SINE Alu 2 142 -6 3 1452 3210 93 0 47 chr1 113740222 113740694 -83454738 - L1_Mus2 LINE L1 0 6566 6117 3 1452 7318 95 10 1 chr1 113740694 113741901 -83453531 + L1_Mus2 LINE L1 4743 5965 -601 3 1452 5558 95 21 9 chr1 113742119 113742914 -83452518 - Lx3_Mus LINE L1 0 7009 6205 3 1452 15552 106 19 38 chr1 113742915 113745514 -83449918 + L1MA9 LINE L1 3420 6012 -300 3 1452 954 132 4 26 chr1 113745718 113745910 -83449522 + L1MA9 LINE L1 6001 6211 -798 3 1452 29 78 0 0 chr1 113746287 113746351 -83449081 + AT_rich Low_complexity Low_complexity 1 64 0 3 1452 353 312 39 0 chr1 113746967 113747096 -83448336 - B1F2 SINE Alu -5 142 11 3 1452 302 0 0 0 chr1 113747229 113747264 -83448168 - U2 snRNA snRNA -153 35 1 3 1452 24 53 0 0 chr1 113747775 113747813 -83447619 + AT_rich Low_complexity Low_complexity 1 38 0 3 1452 1035 94 0 0 chr1 113748016 113748165 -83447267 + (TA)n Simple_repeat Simple_repeat 1 149 0 3 1452 4105 127 17 0 chr1 113748426 113749058 -83446374 + Lx4A LINE L1 5587 6229 -829 3 1452 1056 174 170 22 chr1 113749056 113749326 -83446106 + Lx4A LINE L1 6748 7057 -1 3 1452 26 77 0 32 chr1 113749728 113749822 -83445610 + AT_rich Low_complexity Low_complexity 1 91 0 3 1452 25 31 0 0 chr1 113750397 113750429 -83445003 + AT_rich Low_complexity Low_complexity 1 32 0 3 1452 225 132 0 0 chr1 113755133 113755171 -83440261 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1452 24 32 0 0 chr1 113761577 113761608 -83433824 + GC_rich Low_complexity Low_complexity 1 31 0 3 1452 404 335 0 23 chr1 113764050 113764221 -83431211 + CT-rich Low_complexity Low_complexity 3 169 0 3 1452 353 295 131 16 chr1 113764429 113764599 -83430833 + B3A SINE B2 8 182 -16 3 1452 6104 113 23 5 chr1 113764747 113764770 -83430662 - Lx3_Mus LINE L1 -1 7008 6987 3 1452 297 0 0 0 chr1 113764770 113764803 -83430629 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1452 6104 113 23 5 chr1 113764803 113765724 -83429708 - Lx3_Mus LINE L1 -23 6986 6047 3 1452 711 321 29 92 chr1 113765843 113766267 -83429165 - MTE2a LTR MaLR -2 417 1 3 1452 1015 281 26 58 chr1 113766549 113766931 -83428501 - ORR1D2 LTR MaLR 0 370 1 3 1452 286 323 31 0 chr1 113768199 113768295 -83427137 - PB1D7 SINE Alu -19 101 3 3 1452 434 247 81 23 chr1 113768437 113768611 -83426821 - L1MA4 LINE L1 -432 5868 5685 3 1452 228 278 0 0 chr1 113768627 113768699 -83426733 + L1MA8 LINE L1 6156 6227 -64 3 1452 229 308 95 71 chr1 113769116 113769284 -83426148 - MER102b DNA MER1_type -139 202 31 3 1452 22 35 0 0 chr1 113769551 113769580 -83425852 + AT_rich Low_complexity Low_complexity 1 29 0 3 1452 399 153 31 0 chr1 113770067 113770165 -83425267 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 3 1452 582 15 0 0 chr1 113770279 113770346 -83425086 - L1Md_F2 LINE L1 -247 6335 6269 3 1452 351 40 0 0 chr1 113770346 113770396 -83425036 + L1Md_T LINE L1 6533 6582 0 3 1453 23 0 0 0 chr1 113772094 113772117 -83423315 + AT_rich Low_complexity Low_complexity 1 23 0 3 1453 1561 217 99 76 chr1 113773054 113773567 -83421865 - RLTR20B3 LTR ERVK -32 545 21 3 1453 21 36 0 0 chr1 113774414 113774442 -83420990 + AT_rich Low_complexity Low_complexity 1 28 0 3 1453 262 284 0 13 chr1 113774930 113775005 -83420427 - Lx6 LINE L1 -301 7159 7086 3 1453 387 0 0 0 chr1 113775686 113775729 -83419703 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 1453 228 299 11 22 chr1 113776543 113776632 -83418800 - Lx7 LINE L1 -26 7670 7583 3 1453 545 250 0 0 chr1 113776672 113776784 -83418648 + RMER6D LTR ERVK 606 717 -3 3 1453 26 0 0 0 chr1 113776787 113776813 -83418619 + AT_rich Low_complexity Low_complexity 1 26 0 3 1453 306 167 0 0 chr1 113777112 113777172 -83418260 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1453 24 32 0 0 chr1 113777199 113777230 -83418202 + AT_rich Low_complexity Low_complexity 1 31 0 3 1453 21 0 0 0 chr1 113778226 113778247 -83417185 + AT_rich Low_complexity Low_complexity 1 21 0 3 1453 35 78 0 0 chr1 113778302 113778379 -83417053 + AT_rich Low_complexity Low_complexity 1 77 0 3 1453 3663 150 38 0 chr1 113778406 113779014 -83416418 + Lx3B LINE L1 6248 6878 -95 3 1453 328 206 72 10 chr1 113779168 113779269 -83416163 + Lx3B LINE L1 6883 7009 0 3 1453 24 32 0 0 chr1 113779279 113779310 -83416122 + AT_rich Low_complexity Low_complexity 1 31 0 3 1453 1429 282 118 55 chr1 113779801 113780652 -83414780 - RMER13B LTR ERVK -4 904 1 3 1453 2853 57 22 42 chr1 113780995 113781397 -83414035 + MTA_Mm LTR MaLR 1 394 -2 3 1453 2684 88 9 12 chr1 113781399 113781805 -83413627 + MTA_Mm-int LTR MaLR 1 373 -725 3 1453 33534 75 1 16 chr1 113781805 113787087 -83408345 + L1Md_F2 LINE L1 384 5586 -297 3 1453 7879 57 2 0 chr1 113787088 113788077 -83407355 + L1Md_F2 LINE L1 5588 6578 -4 3 1453 4240 104 38 99 chr1 113788092 113788880 -83406552 + MTA_Mm-int LTR MaLR 359 1098 0 3 1453 3116 68 0 5 chr1 113788882 113789278 -83406154 + MTA_Mm LTR MaLR 3 396 0 3 1453 1199 274 93 73 chr1 113790256 113790665 -83404767 - MTD LTR MaLR -2 417 1 3 1453 2695 32 70 0 chr1 113791528 113791871 -83403561 + L1Md_F3 LINE L1 6207 6573 -11 3 1453 21 57 0 0 chr1 113792720 113792755 -83402677 + AT_rich Low_complexity Low_complexity 1 35 0 3 1453 2162 239 84 45 chr1 113792760 113793329 -83402103 - RLTR40 LTR ERVK -9 808 200 3 1453 1588 36 0 10 chr1 113793329 113793524 -83401908 + B2_Mm1t SINE B2 1 193 0 3 1453 2162 244 73 40 chr1 113793524 113793685 -83401747 - RLTR40 LTR ERVK -618 199 1 3 1453 6892 143 12 3 chr1 113794159 113795650 -83399782 + Lx LINE L1 5150 6654 0 3 1453 478 321 26 16 chr1 113796025 113796218 -83399214 - ORR1D2 LTR MaLR -7 363 169 3 1453 857 107 7 0 chr1 113796229 113796378 -83399054 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 3 1453 331 295 0 69 chr1 113796401 113796532 -83398900 - ORR1D2 LTR MaLR -210 164 43 3 1453 882 204 39 0 chr1 113796563 113796744 -83398688 - ORR1D2-int LTR MaLR -2 1368 1181 3 1453 1431 289 73 17 chr1 113798208 113798733 -83396699 + MYSERV6-int LTR ERVK 391 943 -8016 3 1453 477 0 0 0 chr1 113798733 113798786 -83396646 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 1453 1431 289 73 17 chr1 113798786 113798894 -83396538 + MYSERV6-int LTR ERVK 944 1058 -7901 3 1453 11286 251 48 41 chr1 113798913 113803857 -83391575 + MYSERV6-int LTR ERVK 1314 6331 -219 3 1453 4056 78 0 16 chr1 113803857 113804415 -83391017 + L1Md_F2 LINE L1 6034 6582 0 3 1453 3634 214 49 57 chr1 113804415 113804558 -83390874 + MYSERV6-int LTR ERVK 2696 2832 -10 3 1453 1103 299 42 17 chr1 113804559 113804916 -83390516 + Lx6 LINE L1 6951 7316 -144 3 1453 287 17 62 62 chr1 113804921 113804985 -83390447 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1453 248 268 40 20 chr1 113804998 113805097 -83390335 + Lx6 LINE L1 7360 7460 0 3 1453 1625 294 97 76 chr1 113805101 113805268 -83390164 - ORR1D2-int LTR MaLR -569 801 653 3 1453 1074 51 0 0 chr1 113805268 113805406 -83390026 - L1Md_F2 LINE L1 -11 6571 6434 3 1453 1625 294 97 76 chr1 113805406 113806023 -83389409 - ORR1D2-int LTR MaLR -718 652 1 3 1453 1415 268 2 109 chr1 113806023 113806437 -83388995 - ORR1D2 LTR MaLR 0 370 1 3 1453 25 65 0 0 chr1 113807539 113807585 -83387847 + AT_rich Low_complexity Low_complexity 1 46 0 4 1453 212 333 0 0 chr1 113807648 113807723 -83387709 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1453 792 300 116 50 chr1 113807729 113808150 -83387282 - Lx9 LINE L1 -206 7438 6990 4 1453 458 246 0 30 chr1 113808176 113808293 -83387139 - RMER1A Other Other -7 1023 908 4 1453 456 19 0 0 chr1 113808293 113808346 -83387086 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1453 458 246 0 30 chr1 113808346 113808362 -83387070 - RMER1A Other Other -123 907 894 4 1453 1382 118 15 0 chr1 113808369 113808573 -83386859 - BGLII_Mus LTR ERVK -215 207 1 4 1453 1319 319 22 76 chr1 113808711 113809003 -83386429 - Lx9 LINE L1 -647 6997 6732 4 1453 1122 88 0 13 chr1 113809003 113809153 -83386279 - B1_Mus1 SINE Alu 0 148 1 4 1453 1319 319 22 76 chr1 113809153 113809491 -83385941 - Lx9 LINE L1 -913 6731 6401 4 1453 307 55 18 18 chr1 113809500 113809555 -83385877 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 1453 1433 160 42 0 chr1 113809700 113809962 -83385470 - Lx2 LINE L1 -2 6995 6723 4 1453 3974 174 73 16 chr1 113809962 113810689 -83384743 + Lx2 LINE L1 5955 6722 -275 4 1453 2625 94 42 3 chr1 113810819 113811204 -83384228 - MTB LTR MaLR 0 400 1 4 1453 384 304 282 6 chr1 113811870 113812217 -83383215 - Lx7 LINE L1 -1397 6299 5858 4 1453 360 0 0 0 chr1 113813834 113813874 -83381558 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1453 363 328 34 29 chr1 113814700 113814907 -83380525 - B3 SINE B2 -7 209 2 4 1453 493 285 35 44 chr1 113814970 113815246 -83380186 - Lx9 LINE L1 -1115 6529 6312 4 1453 34985 75 14 0 chr1 113815417 113821746 -83373686 - L1Md_F2 LINE L1 -2 6580 163 4 1453 3801 255 60 81 chr1 113821754 113821980 -83373452 - Lx9 LINE L1 -1616 6028 5784 4 1453 731 93 169 0 chr1 113821980 113822098 -83373334 - B1_Mus1 SINE Alu -10 138 1 4 1453 3801 260 61 103 chr1 113822098 113824180 -83371252 - Lx9 LINE L1 -64 5783 3776 4 1453 637 330 4 53 chr1 113824670 113824897 -83370535 - B3 SINE B2 0 216 1 4 1453 447 289 26 19 chr1 113824939 113825094 -83370338 - Lx8 LINE L1 -1120 6353 6198 4 1453 228 67 0 0 chr1 113825278 113825308 -83370124 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 1453 5575 167 32 16 chr1 113825707 113826355 -83369077 - L1_Mur2 LINE L1 -576 5301 4634 4 1453 6485 40 5 2 chr1 113826355 113827155 -83368277 - L1Md_F3 LINE L1 -14 6570 5769 4 1453 5575 167 32 16 chr1 113827155 113827578 -83367854 - L1_Mur2 LINE L1 -1244 4633 4213 4 1453 5516 167 67 7 chr1 113827591 113828848 -83366584 + Lx LINE L1 5314 6654 0 4 1453 644 172 6 0 chr1 113829363 113829532 -83365900 + CT-rich Low_complexity Low_complexity 2 171 0 4 1453 23 68 0 0 chr1 113829977 113830021 -83365411 + AT_rich Low_complexity Low_complexity 1 44 0 4 1453 351 0 0 0 chr1 113831488 113831527 -83363905 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1453 292 391 25 54 chr1 113832008 113832211 -83363221 + B3A SINE B2 2 198 0 4 1453 24 32 0 0 chr1 113832370 113832401 -83363031 + AT_rich Low_complexity Low_complexity 1 31 0 4 1453 308 301 245 0 chr1 113832436 113832579 -83362853 - B3A SINE B2 -19 179 2 4 1453 7122 58 21 3 chr1 113832664 113833986 -83361446 - L1Md_F2 LINE L1 -12 6570 5215 4 1453 430 384 41 18 chr1 113834600 113834820 -83360612 + LTR53 LTR ERVL 228 452 -67 4 1453 345 365 40 33 chr1 113835778 113835928 -83359504 - RSINE1 SINE B4 0 165 15 4 1453 1508 216 228 28 chr1 113837047 113837542 -83357890 + RMER19B LTR ERVK 305 898 -4 4 1453 310 0 0 0 chr1 113837588 113837624 -83357808 - U2 snRNA snRNA -152 36 1 4 1453 2425 150 68 15 chr1 113837630 113838097 -83357335 - L1_Mur2 LINE L1 -728 5149 4658 4 1453 8148 40 2 3 chr1 113838093 113839147 -83356285 - L1Md_F3 LINE L1 0 6584 5532 4 1453 3215 144 45 2 chr1 113839134 113839713 -83355719 - L1_Mur2 LINE L1 -1218 4659 4056 4 1453 522 180 0 18 chr1 113839718 113839831 -83355601 + Lx4A LINE L1 6946 7056 -2 4 1453 23 0 0 0 chr1 113839831 113839854 -83355578 + AT_rich Low_complexity Low_complexity 1 23 0 4 1453 1319 207 24 8 chr1 113842007 113842345 -83353087 + Lx5 LINE L1 898 1227 -5430 4 1453 5762 190 0 5 chr1 113842345 113842960 -83352472 + Lx5 LINE L1 5256 5866 -11 4 1453 1148 76 0 0 chr1 113842960 113843104 -83352328 + B1_Mm SINE Alu 2 145 -2 4 1453 5762 223 36 50 chr1 113843104 113844302 -83351130 + Lx5 LINE L1 5866 7050 0 4 1453 279 286 0 0 chr1 113844329 113844392 -83351040 - MTE2a LTR MaLR -316 63 1 4 1453 197 303 0 57 chr1 113844656 113844726 -83350706 + MIRc SINE MIR 164 229 -39 4 1453 242 318 131 0 chr1 113844999 113845106 -83350326 + MER5A DNA MER1_type 53 173 -16 4 1453 477 272 313 35 chr1 113845608 113845889 -83349543 + Lx4B LINE L1 6682 7040 -18 4 1453 30 0 0 0 chr1 113845889 113845919 -83349513 + AT_rich Low_complexity Low_complexity 1 30 0 4 1453 336 318 60 74 chr1 113846049 113846266 -83349166 + MER21B LTR ERV1 93 306 -557 4 1453 20221 113 33 9 chr1 113846495 113850102 -83345330 - Lx2B LINE L1 -7 6993 2922 4 1453 1209 76 387 0 chr1 113850074 113850312 -83345120 - Lx2B LINE L1 -3954 1929 1600 4 1453 5676 85 9 8 chr1 113850313 113851088 -83344344 + L1Md_F2 LINE L1 5804 6579 -3 4 1453 50 18 0 0 chr1 113851298 113851355 -83344077 + AT_rich Low_complexity Low_complexity 1 57 0 4 1453 217 128 73 146 chr1 113851443 113851498 -83343934 - PB1D9 SINE Alu -46 74 24 4 1453 396 40 0 0 chr1 113851662 113851712 -83343720 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1453 362 318 46 31 chr1 113852633 113852828 -83342604 + B3A SINE B2 1 198 0 4 1453 584 286 33 28 chr1 113852830 113853042 -83342390 - B3 SINE B2 0 216 4 4 1453 408 261 77 17 chr1 113853375 113853492 -83341940 + RSINE1 SINE B4 2 125 -40 4 1453 250 237 21 14 chr1 113853708 113853849 -83341583 + (TA)n Simple_repeat Simple_repeat 2 143 0 4 1453 406 145 0 0 chr1 113853921 113853983 -83341449 - ORR1C2 LTR MaLR -297 87 26 4 1453 37525 17 3 7 chr1 113853984 113859174 -83336258 + L1Md_A LINE L1 423 5586 -297 4 1453 8629 21 0 1 chr1 113859174 113860171 -83335261 + L1Md_A LINE L1 5587 6582 0 4 1453 840 99 0 0 chr1 113860413 113860555 -83334877 + (TC)n Simple_repeat Simple_repeat 1 142 0 4 1453 839 338 60 62 chr1 113860839 113861170 -83334262 - Lx5 LINE L1 -106 6944 6696 4 1453 3313 112 15 28 chr1 113861170 113861701 -83333731 - Lx3_Mus LINE L1 0 7009 6486 4 1453 839 334 74 59 chr1 113861701 113861839 -83333593 - Lx5 LINE L1 -355 6695 6535 4 1453 360 0 0 0 chr1 113862012 113862052 -83333380 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 1453 786 179 121 32 chr1 113863343 113863533 -83331899 + Lx4A LINE L1 6849 7055 -3 4 1453 21 57 0 0 chr1 113863549 113863584 -83331848 + AT_rich Low_complexity Low_complexity 1 35 0 4 1453 21 0 0 0 chr1 113864404 113864425 -83331007 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 517 329 108 9 chr1 113865374 113865586 -83329846 - Lx8 LINE L1 -783 6690 6458 4 1453 2917 97 0 30 chr1 113865735 113866169 -83329263 - BGLII LTR ERVK 0 421 1 4 1453 9254 160 14 4 chr1 113866919 113869472 -83325960 + Lx LINE L1 4070 6654 0 4 1453 686 170 376 6 chr1 113869474 113869647 -83325785 + RLTR25A LTR ERVK 589 825 -278 4 1453 717 45 0 0 chr1 113869647 113869736 -83325696 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 4 1453 554 266 253 28 chr1 113869797 113870131 -83325301 + Lx7 LINE L1 5787 6195 -1501 4 1453 681 277 0 6 chr1 113870496 113870656 -83324776 - Lx5 LINE L1 -412 6638 6480 4 1453 1288 265 71 17 chr1 113870653 113871060 -83324372 - Lx5 LINE L1 -686 6364 5936 4 1453 1894 183 40 5 chr1 113871057 113871506 -83323926 - L1_Mur2 LINE L1 -1354 4523 4059 4 1453 4917 35 0 37 chr1 113871508 113872131 -83323301 + L1Md_F2 LINE L1 5658 6257 -325 4 1453 1420 44 0 0 chr1 113872131 113872312 -83323120 + L1Md_F2 LINE L1 6388 6568 -14 4 1453 2206 195 63 6 chr1 113872334 113872824 -83322608 - L1_Mur2 LINE L1 -1811 4066 3549 4 1453 456 305 48 11 chr1 113872892 113873302 -83322130 - L1MA4 LINE L1 -418 5882 5457 4 1453 2018 64 4 7 chr1 113873477 113873746 -83321686 + L1_Mus2 LINE L1 6298 6565 -1 4 1453 22 0 0 0 chr1 113873749 113873771 -83321661 + AT_rich Low_complexity Low_complexity 1 22 0 4 1453 554 0 15 0 chr1 113874577 113874643 -83320789 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1453 522 46 0 0 chr1 113875525 113875590 -83319842 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1453 443 369 31 5 chr1 113876395 113876591 -83318841 + Lx8 LINE L1 7082 7282 -191 4 1453 22 35 0 0 chr1 113877024 113877053 -83318379 + AT_rich Low_complexity Low_complexity 1 29 0 4 1453 27 0 0 0 chr1 113877538 113877565 -83317867 + AT_rich Low_complexity Low_complexity 1 27 0 4 1453 21 0 0 0 chr1 113878447 113878468 -83316964 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 339 25 0 0 chr1 113879528 113879568 -83315864 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1453 351 44 0 0 chr1 113879568 113879612 -83315820 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1453 21 0 0 0 chr1 113879738 113879759 -83315673 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 30 69 0 0 chr1 113880789 113880847 -83314585 + AT_rich Low_complexity Low_complexity 1 58 0 4 1453 21 0 0 0 chr1 113880963 113880984 -83314448 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 24 0 0 0 chr1 113881521 113881545 -83313887 + AT_rich Low_complexity Low_complexity 1 24 0 4 1453 374 330 187 0 chr1 113882106 113882288 -83313144 + B3 SINE B2 1 216 0 4 1453 22 35 0 0 chr1 113882940 113882969 -83312463 + AT_rich Low_complexity Low_complexity 1 29 0 4 1453 21 0 0 0 chr1 113883011 113883032 -83312400 + AT_rich Low_complexity Low_complexity 1 21 0 4 1453 339 211 27 69 chr1 113883429 113883617 -83311815 - RMER17C LTR ERVK -136 274 95 4 1453 29 60 0 0 chr1 113883635 113883685 -83311747 + AT_rich Low_complexity Low_complexity 1 50 0 4 1453 5838 124 30 15 chr1 113884052 113884996 -83310436 + RMER17B LTR ERVK 1 958 0 4 1453 706 143 13 25 chr1 113885245 113885403 -83310029 + L1_Mus4 LINE L1 6449 6604 -32 4 1453 1699 232 111 13 chr1 113886306 113886764 -83308668 - Lx2B LINE L1 -4 6996 6494 4 1453 199 106 29 43 chr1 113886814 113886883 -83308549 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1453 1192 61 0 7 chr1 113887938 113888087 -83307345 + B1_Mus1 SINE Alu 1 148 0 4 1453 216 103 0 25 chr1 113888087 113888127 -83307305 + (CAAAAA)n Simple_repeat Simple_repeat 5 43 0 4 1453 324 0 0 0 chr1 113888281 113888317 -83307115 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1453 24 32 0 0 chr1 113888709 113888740 -83306692 + AT_rich Low_complexity Low_complexity 1 31 0 4 1453 674 125 101 8 chr1 113888752 113888881 -83306551 - Lx2 LINE L1 -1 6996 6856 5 1453 228 143 0 0 chr1 113889616 113889658 -83305774 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1453 433 350 24 48 chr1 113890519 113890684 -83304748 + RSINE1 SINE B4 3 163 -2 5 1453 40 49 0 0 chr1 113890686 113890747 -83304685 + AT_rich Low_complexity Low_complexity 1 61 0 5 1453 243 121 182 0 chr1 113891586 113891652 -83303780 + RLTR10 LTR ERVK 1 78 -312 5 1453 3528 53 2 38 chr1 113891652 113892123 -83303309 - RLTR10-int LTR ERVK -1531 456 3 5 1453 2668 39 2 176 chr1 113892131 113892598 -83302834 - RLTR10 LTR ERVK -4 386 1 5 1453 310 319 102 55 chr1 113893288 113893543 -83301889 - B4 SINE B4 -23 269 3 5 1453 994 252 0 5 chr1 113894307 113894522 -83300910 - B3 SINE B2 -1 215 2 5 1453 4930 40 5 5 chr1 113894534 113895136 -83300296 - L1Md_F3 LINE L1 -1 6583 5982 5 1453 636 14 0 0 chr1 113895947 113896020 -83299412 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1453 559 327 26 0 chr1 113896834 113896987 -83298445 - B3A SINE B2 -41 157 1 5 1453 331 176 15 0 chr1 113897210 113897278 -83298154 - RMER1A Other Other -10 1020 952 5 1453 3506 72 2 0 chr1 113897278 113897737 -83297695 - MT2C_Mm LTR ERVL 0 475 16 5 1453 1523 222 51 22 chr1 113897743 113898098 -83297334 - RMER1A Other Other -75 955 591 5 1453 1063 101 0 26 chr1 113898121 113898273 -83297159 - B1_Mus1 SINE Alu 0 148 1 5 1453 1168 84 12 0 chr1 113898301 113898467 -83296965 - B2_Mm1t SINE B2 0 193 26 5 1453 2114 286 31 26 chr1 113898483 113899061 -83296371 - RMER1A Other Other -424 606 26 5 1453 695 295 57 10 chr1 113899060 113899269 -83296163 - RMER1B Other Other -823 243 25 5 1453 225 0 0 0 chr1 113899415 113899440 -83295992 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 5 1453 6305 119 62 3 chr1 113899471 113901091 -83294341 - L1_Mus3 LINE L1 -4 6634 4923 5 1453 2583 125 106 0 chr1 113901090 113901505 -83293927 - L1Md_F LINE L1 -5766 753 295 5 181 2478 89 42 6 chr1 113901506 113901867 -83293565 + L1Md_F2 LINE L1 6197 6570 -12 5 1454 17863 159 72 13 chr1 113901900 113902201 -83293231 - L1_Mus3 LINE L1 -937 4946 4650 5 1454 2791 49 0 23 chr1 113902201 113902555 -83292877 - ORR1A1 LTR MaLR 0 346 1 5 1454 17863 161 70 15 chr1 113902555 113906386 -83289046 - L1_Mus3 LINE L1 -1234 4649 578 5 1454 3047 155 64 0 chr1 113907292 113907853 -83287579 - L1_Mm LINE L1 -477 5406 4810 5 1454 7741 130 20 3 chr1 113907853 113909101 -83286331 + L1_Mm LINE L1 3324 4592 -1291 5 1454 1163 221 107 10 chr1 113909107 113909417 -83286015 - Lx3C LINE L1 -413 6563 6224 5 1454 315 0 0 0 chr1 113909680 113909715 -83285717 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1454 297 0 0 0 chr1 113909715 113909747 -83285685 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1454 537 16 0 0 chr1 113909840 113909902 -83285530 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 5 1454 1003 114 0 0 chr1 113909913 113910053 -83285379 - B1_Mus1 SINE Alu -8 140 1 5 1454 335 249 464 7 chr1 113910291 113910457 -83284975 - ORR1D1 LTR MaLR 0 374 133 5 1454 186 43 0 0 chr1 113910774 113910797 -83284635 + (TTA)n Simple_repeat Simple_repeat 3 25 0 5 1454 735 299 16 11 chr1 113910807 113910993 -83284439 - B3 SINE B2 -24 192 6 5 1454 234 105 0 0 chr1 113911078 113911116 -83284316 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1454 2803 172 73 6 chr1 113911116 113911131 -83284301 - Lx LINE L1 0 6654 6640 5 1454 1085 96 0 0 chr1 113911131 113911277 -83284155 - B1_Mus2 SINE Alu 0 147 2 5 1454 2803 172 73 6 chr1 113911277 113911383 -83284049 - Lx LINE L1 -15 6639 6535 5 1454 282 56 0 0 chr1 113911383 113911419 -83284013 + (CCCA)n Simple_repeat Simple_repeat 2 37 0 5 1454 2803 172 73 6 chr1 113911419 113911840 -83283592 - Lx LINE L1 -120 6534 6076 5 1454 26 0 0 0 chr1 113913047 113913073 -83282359 + AT_rich Low_complexity Low_complexity 1 26 0 5 1454 7048 175 38 9 chr1 113913769 113914240 -83281192 - Lx3C LINE L1 -11 6965 6476 5 1454 2397 212 50 34 chr1 113914240 113914835 -83280597 - RLTR1D LTR ERV1 0 605 1 5 1454 16842 171 32 12 chr1 113914835 113915759 -83279673 - Lx3C LINE L1 -501 6475 5538 5 1454 2860 55 141 139 chr1 113915759 113916270 -83279162 - RLTR1B LTR ERV1 0 512 1 5 1454 16842 165 22 16 chr1 113916270 113918334 -83277098 - Lx3C LINE L1 -349 5537 3481 5 1454 231 36 0 0 chr1 113918334 113918362 -83277070 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1454 16842 165 22 16 chr1 113918362 113919286 -83276146 - Lx3C LINE L1 -2406 3480 2533 5 1454 9442 59 2 15 chr1 113919285 113920515 -83274917 + L1Md_F3 LINE L1 4374 5586 -297 5 1454 8146 35 5 1 chr1 113920516 113921495 -83273937 + L1Md_F3 LINE L1 5588 6570 -14 5 1454 6498 180 30 3 chr1 113921497 113923220 -83272212 - Lx3C LINE L1 -3365 2521 744 5 1454 213 39 0 0 chr1 113923661 113923687 -83271745 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1454 939 128 30 55 chr1 113923875 113924137 -83271295 - L1Md_F2 LINE L1 0 6582 6389 5 1454 1976 50 0 0 chr1 113924137 113924378 -83271054 + L1Md_F2 LINE L1 6202 6442 -140 5 1454 447 122 0 0 chr1 113924903 113924993 -83270439 + (A)n Simple_repeat Simple_repeat 1 90 0 5 1454 180 0 0 0 chr1 113925200 113925220 -83270212 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1454 575 136 9 0 chr1 113926102 113926212 -83269220 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1454 378 0 0 0 chr1 113926212 113926254 -83269178 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1454 23 86 0 0 chr1 113926282 113926340 -83269092 + AT_rich Low_complexity Low_complexity 1 58 0 5 1454 374 325 109 65 chr1 113927124 113927308 -83268124 - B3A SINE B2 -5 193 2 5 1454 373 275 101 0 chr1 113927758 113927867 -83267565 + MTC LTR MaLR 1 120 -299 5 1454 652 90 8 39 chr1 113927869 113927996 -83267436 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 5 1454 826 197 7 0 chr1 113927997 113928139 -83267293 - B1_Mur4 SINE Alu 0 150 8 5 1454 1082 302 7 16 chr1 113928160 113928466 -83266966 + MTC LTR MaLR 113 415 -6 5 1454 474 65 0 0 chr1 113928873 113928935 -83266497 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1454 717 290 32 130 chr1 113928939 113929371 -83266061 - RLTR18B LTR ERVK 0 512 123 5 1454 879 258 36 66 chr1 113929355 113929629 -83265803 - RLTR18B LTR ERVK -221 291 26 5 1454 557 257 0 71 chr1 113929962 113930117 -83265315 - Lx9 LINE L1 -478 7166 7023 5 1454 300 266 77 22 chr1 113930144 113930325 -83265107 + Lx9 LINE L1 7308 7498 -146 5 1454 21 36 0 0 chr1 113930422 113930450 -83264982 + AT_rich Low_complexity Low_complexity 1 28 0 5 1454 187 271 51 0 chr1 113931227 113931286 -83264146 - L3 LINE CR1 -3470 1019 958 5 1454 506 122 0 0 chr1 113931297 113931379 -83264053 - L1_Mur1 LINE L1 -1233 4653 4572 5 1454 5182 141 2 8 chr1 113931374 113932231 -83263201 + L1_Mur1 LINE L1 4750 5601 -285 5 1454 5935 164 112 40 chr1 113932353 113933540 -83261892 + L1_Mur1 LINE L1 148 1431 -4455 5 1454 243 0 0 0 chr1 113933540 113933567 -83261865 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1454 5935 126 5 31 chr1 113933567 113934378 -83261054 + L1_Mur1 LINE L1 1432 2243 -3643 5 1454 2885 98 0 0 chr1 113934378 113934778 -83260654 - MTB LTR MaLR 0 400 1 5 1454 5820 141 16 88 chr1 113934778 113934867 -83260565 - MTB-int LTR MaLR 0 1098 1028 5 1454 4111 66 15 2 chr1 113934867 113935410 -83260022 - L1_Mus1 LINE L1 0 6567 6018 5 1454 5820 141 16 88 chr1 113935410 113936503 -83258929 - MTB-int LTR MaLR -71 1027 1 5 1454 2092 118 139 8 chr1 113936505 113936857 -83258575 - MTB LTR MaLR -2 398 1 5 1454 9719 130 11 33 chr1 113936857 113938019 -83257413 + L1_Mur1 LINE L1 2239 3408 -2478 5 1454 6062 43 18 17 chr1 113938019 113938793 -83256639 + L1Md_F2 LINE L1 5807 6581 -1 5 1454 9719 130 11 33 chr1 113938793 113939388 -83256044 + L1_Mur1 LINE L1 3409 3958 -1928 5 1454 204 111 0 0 chr1 113940286 113940322 -83255110 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1454 341 250 11 21 chr1 113941008 113941102 -83254330 - MURVY-int LTR ERV1 -1964 5488 5396 5 1454 1091 317 34 19 chr1 113941290 113941756 -83253676 - MuRRS4-int LTR ERV1 -1033 4030 3558 5 1454 369 0 0 0 chr1 113942017 113942058 -83253374 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1454 1016 349 37 23 chr1 113942210 113942861 -83252571 - MuRRS4-int LTR ERV1 -3371 4230 3641 5 1454 185 35 69 0 chr1 113942861 113942890 -83252542 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1454 1016 357 30 21 chr1 113942890 113942961 -83252471 - MuRRS4-int LTR ERV1 -3961 3640 3562 5 1454 287 323 88 71 chr1 113943137 113943420 -83252012 - MuRRS4-int LTR ERV1 -3458 1605 1318 5 1454 214 158 0 0 chr1 113943484 113943522 -83251910 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1454 270 160 20 0 chr1 113943725 113943775 -83251657 + MMVL30-int LTR ERV1 1294 1344 -2354 5 1454 486 70 27 14 chr1 113943997 113944070 -83251362 - B2_Mm2 SINE B2 -119 76 3 5 1454 246 23 0 65 chr1 113944627 113944673 -83250759 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1454 251 247 51 25 chr1 113944811 113944890 -83250542 - RMER2 LTR ERV1 -24 543 463 5 1454 4665 125 18 0 chr1 113945024 113945762 -83249670 + L1_Mur1 LINE L1 3908 4658 -1228 5 1454 4112 29 4 0 chr1 113950772 113951252 -83244180 - LTRIS_Mm LTR ERV1 0 482 1 5 1454 3209 108 26 2 chr1 113952765 113953229 -83242203 + MT2C_Mm LTR ERVL 1 475 0 5 1454 6833 97 139 1 chr1 113954551 113954694 -83240738 + Lx3_Mus LINE L1 4653 4801 -1085 5 1454 378 0 0 0 chr1 113954694 113954736 -83240696 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1454 6833 97 139 1 chr1 113954736 113955189 -83240243 + Lx3_Mus LINE L1 4802 5267 -619 5 1454 210 37 0 0 chr1 113955189 113955216 -83240216 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1454 7967 99 135 2 chr1 113955216 113955726 -83239706 + Lx3_Mus LINE L1 5268 5907 -1102 5 1454 497 16 16 0 chr1 113955726 113955788 -83239644 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1454 7967 133 53 25 chr1 113955788 113956851 -83238581 + Lx3_Mus LINE L1 5908 7008 -1 5 1454 4410 186 42 4 chr1 113956855 113958078 -83237354 + Lx3C LINE L1 5592 6965 -11 5 1454 205 256 35 0 chr1 113958429 113958515 -83236917 + CT-rich Low_complexity Low_complexity 2 90 0 5 1454 279 21 0 59 chr1 113958537 113958550 -83236882 + (TTCTC)n Simple_repeat Simple_repeat 5 17 0 5 1454 1287 84 0 0 chr1 113958550 113958728 -83236704 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1454 279 21 0 59 chr1 113958728 113958765 -83236667 + (TTCTC)n Simple_repeat Simple_repeat 5 39 0 5 1454 684 315 42 18 chr1 113958789 113959006 -83236426 - B4 SINE B4 0 292 71 5 1454 2125 167 46 22 chr1 113959154 113959565 -83235867 - MTC LTR MaLR 0 421 1 5 1454 21 0 0 0 chr1 113959593 113959614 -83235818 + AT_rich Low_complexity Low_complexity 1 21 0 5 1454 249 139 0 0 chr1 113959892 113959935 -83235497 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 5 1454 300 119 0 0 chr1 113960602 113960661 -83234771 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1454 375 154 0 0 chr1 113960669 113960734 -83234698 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1454 423 0 0 0 chr1 113960734 113960781 -83234651 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1454 3081 191 23 29 chr1 113962308 113962957 -83232475 + Lx LINE L1 6010 6654 0 5 1454 420 111 0 0 chr1 113963004 113963067 -83232365 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 5 1454 1125 88 0 0 chr1 113963069 113963216 -83232216 - B1_Mm SINE Alu 0 147 1 5 1454 195 306 124 62 chr1 113963435 113963564 -83231868 + L2c LINE L2 3249 3385 -2 5 1454 1047 122 12 6 chr1 113963833 113964006 -83231426 + Lx2 LINE L1 6087 6260 -737 5 1454 988 113 7 0 chr1 113964017 113964159 -83231273 + Lx3A LINE L1 6455 6597 -384 6 1454 389 113 0 0 chr1 113964159 113964230 -83231202 + Lx3_Mus LINE L1 6939 7009 0 6 1454 4021 138 70 1 chr1 113964270 113964851 -83230581 + Lx2 LINE L1 6277 6896 -101 5 1454 1299 120 0 0 chr1 113964851 113965042 -83230390 + B2_Mm2 SINE B2 5 195 0 6 1454 4021 138 70 1 chr1 113965042 113965129 -83230303 + Lx2 LINE L1 6897 6991 -6 5 1454 690 194 70 6 chr1 113965195 113965366 -83230066 + URR1A DNA MER1_type 44 225 -1 6 1454 1854 123 38 28 chr1 113965401 113965417 -83230015 - Lx3A LINE L1 -3 6978 6967 6 1454 216 0 0 0 chr1 113965417 113965441 -83229991 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1454 1854 123 38 28 chr1 113965441 113965742 -83229690 - Lx3A LINE L1 -15 6966 6658 6 1454 452 286 21 0 chr1 113966515 113966655 -83228777 + Lx8 LINE L1 6645 6787 -686 6 1454 273 29 0 0 chr1 113966863 113966897 -83228535 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1454 606 293 81 15 chr1 113966914 113967174 -83228258 + MER57D LTR ERV1 135 411 0 6 1454 814 305 42 35 chr1 113967179 113967492 -83227940 + MER82 DNA MER2_type 50 364 -289 6 1454 1571 241 74 5 chr1 113967519 113967899 -83227533 + MTD LTR MaLR 1 406 -13 6 1454 1309 260 79 35 chr1 113967930 113968388 -83227044 + RLTR26 LTR ERVK 5 524 -118 6 1454 204 40 0 0 chr1 113968388 113968413 -83227019 + (CAG)n Simple_repeat Simple_repeat 3 27 0 6 1454 1309 262 113 39 chr1 113968413 113968518 -83226914 + RLTR26 LTR ERVK 525 637 -5 6 1454 530 313 67 0 chr1 113968519 113968714 -83226718 - ID_B1 SINE B4 -14 210 3 6 1454 259 386 84 5 chr1 113968721 113968911 -83226521 + MER82 DNA MER2_type 355 559 -94 6 1454 413 83 0 0 chr1 113968948 113969008 -83226424 + Lx3A LINE L1 6909 6968 -13 6 1454 213 39 0 0 chr1 113969008 113969034 -83226398 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1454 525 259 107 6 chr1 113969075 113969234 -83226198 + RMER15 LTR ERVL 401 575 0 6 1454 234 191 0 0 chr1 113969632 113969679 -83225753 + L1MD3 LINE L1 6980 7026 -969 6 1454 241 357 0 39 chr1 113970446 113970548 -83224884 - L2a LINE L2 -68 3358 3261 6 1454 34 0 0 0 chr1 113970621 113970655 -83224777 + AT_rich Low_complexity Low_complexity 1 34 0 6 1454 203 424 61 12 chr1 113970733 113970979 -83224453 - L2a LINE L2 -414 3005 2748 6 1454 1856 192 66 44 chr1 113970979 113971388 -83224044 - MTC LTR MaLR 0 421 4 6 1454 434 379 0 6 chr1 113971584 113971746 -83223686 - RSINE1 SINE B4 0 165 5 6 1454 21 82 0 0 chr1 113972121 113972170 -83223262 + AT_rich Low_complexity Low_complexity 1 49 0 6 1454 20120 167 20 7 chr1 113972575 113976941 -83218491 + L1VL4 LINE L1 690 5103 -780 6 1454 21 0 0 0 chr1 113977103 113977124 -83218308 + AT_rich Low_complexity Low_complexity 1 21 0 6 1454 445 298 60 12 chr1 113977150 113977401 -83218031 + RCHARR1 DNA MER1_type 651 913 -61 6 1454 554 329 34 38 chr1 113977423 113977688 -83217744 + B4A SINE B4 6 269 -23 6 1454 309 51 0 0 chr1 113977690 113977729 -83217703 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1454 1085 182 9 0 chr1 113977833 113978047 -83217385 - L1_Mur2 LINE L1 -528 5349 5134 6 1454 240 35 0 0 chr1 113978575 113978604 -83216828 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 6 1454 335 327 145 0 chr1 113979062 113979221 -83216211 - RMER20B LTR ERVK -292 335 154 6 1454 230 324 27 0 chr1 113980975 113981049 -83214383 - B4A SINE B4 -216 76 1 6 1454 2359 260 72 31 chr1 113981080 113981877 -83213555 + Lx5 LINE L1 6174 7051 -7 6 1454 201 158 0 0 chr1 113982025 113982063 -83213369 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1454 1627 223 21 5 chr1 113984166 113984554 -83210878 + ORR1B1 LTR MaLR 1 394 0 6 1454 493 315 35 15 chr1 113984756 113984959 -83210473 + B3 SINE B2 4 210 -6 6 1454 2067 224 23 31 chr1 113985093 113985729 -83209703 + Lx6 LINE L1 5484 6117 -1343 6 1454 12066 190 23 40 chr1 113985842 113986272 -83209160 + L1_Mur2 LINE L1 1657 2057 -3820 6 1454 423 0 0 0 chr1 113986272 113986319 -83209113 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1454 12066 190 23 40 chr1 113986319 113988799 -83206633 + L1_Mur2 LINE L1 2058 4518 -1359 6 1454 3467 28 0 0 chr1 113988892 113989288 -83206144 + MTA_Mm LTR MaLR 1 396 0 6 1454 783 0 0 0 chr1 113989502 113989589 -83205843 + (TTC)n Simple_repeat Simple_repeat 1 87 0 6 1454 2192 142 95 23 chr1 113989590 113990021 -83205411 - Lx LINE L1 -12 6642 6181 6 1454 5079 104 4 8 chr1 113990488 113991260 -83204172 + L1_Mm LINE L1 4627 5395 -488 6 1454 24 32 0 0 chr1 113992013 113992044 -83203388 + AT_rich Low_complexity Low_complexity 1 31 0 6 1454 26 64 0 0 chr1 113992314 113992361 -83203071 + AT_rich Low_complexity Low_complexity 1 47 0 6 1454 266 303 46 0 chr1 113992450 113992559 -83202873 + L1MC1 LINE L1 6062 6175 -158 6 1454 504 317 43 6 chr1 113992743 113992905 -83202527 + B3 SINE B2 44 211 -5 6 1454 429 146 0 0 chr1 113992952 113993034 -83202398 - Lx2B LINE L1 -3 6997 6916 6 1454 23 33 0 0 chr1 113993870 113993900 -83201532 + AT_rich Low_complexity Low_complexity 1 30 0 6 1454 546 43 0 0 chr1 113994369 113994438 -83200994 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1454 308 345 14 0 chr1 113994671 113994816 -83200616 + L1MC1 LINE L1 6062 6208 -125 6 1454 183 146 0 0 chr1 113994876 113994917 -83200515 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 6 1454 513 299 43 29 chr1 113995367 113995577 -83199855 + Lx8 LINE L1 6329 6541 -932 6 1454 1393 321 103 22 chr1 113995676 113996532 -83198900 + Lx8 LINE L1 6549 7473 0 6 1454 212 139 0 27 chr1 113998129 113998166 -83197266 + ID4_ SINE ID 47 82 -1 6 1454 707 185 5 1 chr1 113998351 113998488 -83196944 + Lx2B LINE L1 5911 6051 -515 6 1454 4136 204 15 17 chr1 113998473 113999283 -83196149 + Lx2B LINE L1 6163 6970 -30 6 1454 194 0 0 37 chr1 113999283 113999310 -83196122 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 6 1454 310 247 0 12 chr1 113999490 113999572 -83195860 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 6 1454 1420 232 37 47 chr1 114000046 114000626 -83194806 + RMER17C LTR ERVK 14 439 -519 1 1454 248 240 0 0 chr1 114000939 114000989 -83194443 + Lx7 LINE L1 6863 6912 -784 2 1454 458 256 23 91 chr1 114000990 114001054 -83194378 + MT2B LTR ERVL 101 152 -449 3 1454 903 103 0 0 chr1 114001054 114001180 -83194252 + B1_Mus1 SINE Alu 2 127 -21 4 1454 617 96 11 0 chr1 114001198 114001292 -83194140 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 5 1454 729 295 8 25 chr1 114001315 114001558 -83193874 + Lx7 LINE L1 6975 7213 -483 2 1454 390 294 0 53 chr1 114001593 114001744 -83193688 + Lx7 LINE L1 7219 7361 -335 2 1454 240 143 0 0 chr1 114001756 114001798 -83193634 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1454 227 208 0 0 chr1 114001852 114001900 -83193532 + T-rich Low_complexity Low_complexity 1 48 0 7 1454 444 19 0 0 chr1 114003217 114003270 -83192162 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1454 359 130 34 25 chr1 114003290 114003408 -83192024 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 9 1454 31 44 0 0 chr1 114003462 114003507 -83191925 + AT_rich Low_complexity Low_complexity 1 45 0 1 1454 455 188 0 0 chr1 114004027 114004107 -83191325 + RLTR20B3 LTR ERVK 1 80 -497 1 1454 2560 111 95 8 chr1 114004109 114004559 -83190873 + RMER16 LTR ERVK 1 533 0 1 1454 2110 206 65 25 chr1 114004559 114005028 -83190404 + RLTR20B3 LTR ERVK 77 564 -13 1 1454 248 133 17 0 chr1 114005171 114005231 -83190201 + (TTTTTG)n Simple_repeat Simple_repeat 1 61 0 1 1454 417 39 0 0 chr1 114005453 114005504 -83189928 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1 1454 1888 229 96 9 chr1 114005526 114005966 -83189466 + RMER13B LTR ERVK 431 908 0 1 1454 7298 183 50 23 chr1 114006014 114007648 -83187784 + MYSERV16_I-int LTR ERVK 650 2326 0 1 1454 2787 177 31 17 chr1 114007648 114008166 -83187266 + RLTR20B3 LTR ERVK 1 525 -52 1 1454 549 115 0 0 chr1 114008316 114008403 -83187029 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1454 312 231 67 0 chr1 114008415 114008519 -83186913 + Lx9 LINE L1 7534 7644 0 1 1454 899 60 0 0 chr1 114008708 114008825 -83186607 + B1_Mus1 SINE Alu 25 141 -7 1 1454 219 69 0 0 chr1 114008873 114008902 -83186530 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1454 332 274 101 45 chr1 114009089 114009288 -83186144 + RLTR12B LTR ERVK 256 465 -63 2 1454 541 305 16 0 chr1 114009364 114009492 -83185940 - B3 SINE B2 -86 130 1 2 1454 853 306 104 35 chr1 114009582 114010045 -83185387 - MER67D LTR ERV1 -2 512 18 2 1454 237 65 0 0 chr1 114011155 114011186 -83184246 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1454 971 206 19 9 chr1 114011423 114011629 -83183803 - Lx9 LINE L1 -393 7251 7044 2 1454 285 29 0 0 chr1 114011629 114011663 -83183769 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 2 1454 8539 139 25 7 chr1 114011670 114011783 -83183649 - Lx2 LINE L1 -2 6995 6882 2 1454 222 37 0 0 chr1 114011783 114011810 -83183622 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 2 1454 8539 148 19 5 chr1 114011810 114013517 -83181915 - Lx2 LINE L1 -116 6881 5150 2 1454 2616 155 119 0 chr1 114013517 114014021 -83181411 + L1_Mur2 LINE L1 4198 4761 -1116 2 1454 1314 329 46 55 chr1 114014104 114014799 -83180633 + Lx8 LINE L1 6619 7307 -166 3 1454 1679 241 68 38 chr1 114014960 114015589 -83179843 + L1_Mur1 LINE L1 1 619 -6363 3 1454 2154 109 25 3 chr1 114015570 114015884 -83179548 + Lx3A LINE L1 6380 6700 -281 3 1454 1157 118 10 10 chr1 114015884 114016090 -83179342 + Lx LINE L1 6449 6654 0 3 1454 245 212 60 15 chr1 114016221 114016288 -83179144 - Lx7 LINE L1 0 7696 7627 3 1454 320 266 9 0 chr1 114016293 114016402 -83179030 + Lx9 LINE L1 7527 7636 -8 3 1454 386 362 44 20 chr1 114016436 114016626 -83178806 + B3A SINE B2 19 212 -4 3 1454 31 0 0 0 chr1 114016672 114016703 -83178729 + AT_rich Low_complexity Low_complexity 1 31 0 3 1454 228 35 0 0 chr1 114017001 114017030 -83178402 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1454 378 17 16 33 chr1 114017121 114017182 -83178250 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 3 1454 227 176 0 105 chr1 114018565 114018622 -83176810 - MLT2B4 LTR ERVL -68 488 438 4 1454 4371 38 4 2 chr1 114020008 114020539 -83174893 - L1Md_F3 LINE L1 -1 6583 6052 4 1454 784 252 110 24 chr1 114020740 114021059 -83174373 - Lx6 LINE L1 -623 6837 6381 4 1454 34 42 0 0 chr1 114021524 114021572 -83173860 + AT_rich Low_complexity Low_complexity 1 48 0 4 1454 841 238 5 0 chr1 114021874 114022076 -83173356 - L1_Mur3 LINE L1 -898 4982 4780 4 1454 6072 229 99 16 chr1 114023635 114024252 -83171180 + L1_Mur2 LINE L1 1050 1696 -4184 4 1454 180 0 0 0 chr1 114024252 114024272 -83171160 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1454 6072 226 107 14 chr1 114024272 114024491 -83170941 + L1_Mur2 LINE L1 1697 1989 -3891 4 1454 288 0 0 0 chr1 114024491 114024523 -83170909 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1454 6072 226 107 14 chr1 114024523 114025766 -83169666 + L1_Mur2 LINE L1 1990 3324 -2556 4 1454 702 308 22 5 chr1 114027275 114027497 -83167935 + Lx6 LINE L1 7119 7344 -116 4 1454 24 0 0 0 chr1 114027573 114027597 -83167835 + AT_rich Low_complexity Low_complexity 1 24 0 4 1454 1205 256 86 70 chr1 114027950 114028023 -83167409 - RLTR11A LTR ERVK -2 525 458 5 1454 510 17 0 0 chr1 114028023 114028082 -83167350 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1454 1369 228 68 59 chr1 114028082 114028507 -83166925 - RLTR11A LTR ERVK -70 457 19 5 1454 378 0 0 0 chr1 114028569 114028611 -83166821 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1454 207 0 0 0 chr1 114028611 114028633 -83166799 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1454 1350 186 11 4 chr1 114029390 114029660 -83165772 - L1_Mur2 LINE L1 -1473 4404 4133 5 1454 2780 192 37 31 chr1 114029656 114030230 -83165202 + Lx LINE L1 6071 6647 -7 5 1454 636 274 11 22 chr1 114030230 114030409 -83165023 + MTD LTR MaLR 235 411 -8 5 1454 1004 90 0 0 chr1 114031127 114031261 -83164171 + B1_Mus1 SINE Alu 7 140 -8 5 1454 303 113 28 14 chr1 114031261 114031333 -83164099 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1454 22 35 0 0 chr1 114031635 114031664 -83163768 + AT_rich Low_complexity Low_complexity 1 29 0 5 1455 219 319 22 0 chr1 114033017 114033108 -83162324 + GA-rich Low_complexity Low_complexity 3 95 0 6 1455 21 36 0 0 chr1 114033696 114033724 -83161708 + AT_rich Low_complexity Low_complexity 1 28 0 6 1455 2798 31 2 195 chr1 114033841 114034324 -83161108 + RLTR10 LTR ERVK 1 390 0 6 1455 180 125 0 0 chr1 114034528 114034560 -83160872 + (ATG)n Simple_repeat Simple_repeat 3 34 0 6 1455 26 30 0 0 chr1 114036710 114036743 -83158689 + AT_rich Low_complexity Low_complexity 1 33 0 6 1455 232 135 0 71 chr1 114036803 114036859 -83158573 + A-rich Low_complexity Low_complexity 2 53 0 6 1455 213 132 0 0 chr1 114036961 114036999 -83158433 + (TAGG)n Simple_repeat Simple_repeat 4 41 0 6 1455 3407 176 40 14 chr1 114038172 114038898 -83156534 + L1Md_A LINE L1 446 1190 -5534 6 1455 544 85 0 47 chr1 114038885 114038971 -83156461 + L1_Mm LINE L1 5386 5467 -416 6 1455 338 51 0 17 chr1 114038971 114039031 -83156401 + L1Md_F2 LINE L1 6524 6582 0 6 1455 922 181 0 0 chr1 114039807 114039956 -83155476 - B2_Mm2 SINE B2 -46 149 1 7 1455 729 34 0 0 chr1 114040361 114040449 -83154983 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 1455 189 0 0 0 chr1 114040771 114040792 -83154640 + (TTG)n Simple_repeat Simple_repeat 1 21 0 7 1455 244 228 37 25 chr1 114041346 114041427 -83154005 - Charlie21a DNA MER1_type -337 876 795 7 1455 2587 69 12 0 chr1 114041720 114042066 -83153366 + L1Md_F3 LINE L1 5237 5586 -297 7 1455 8093 43 3 3 chr1 114042066 114043059 -83152373 + L1Md_F3 LINE L1 5587 6579 -5 7 1455 11142 114 45 55 chr1 114043098 114044275 -83151157 + MusHAL1 LINE L1 33 1266 -1446 7 1455 829 94 17 0 chr1 114044275 114044392 -83151040 + PB1D9 SINE Alu 2 120 0 7 1455 11142 114 45 55 chr1 114044392 114045289 -83150143 + MusHAL1 LINE L1 1267 2086 -626 7 1455 8141 99 34 8 chr1 114045386 114046452 -83148980 - Lx3_Mus LINE L1 0 7009 5923 7 1455 210 37 0 0 chr1 114046452 114046479 -83148953 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1455 8141 99 34 8 chr1 114046479 114046628 -83148804 - Lx3_Mus LINE L1 -1087 5922 5764 7 1455 30 27 0 0 chr1 114046719 114046756 -83148676 + AT_rich Low_complexity Low_complexity 1 37 0 7 1455 461 334 80 44 chr1 114046982 114047280 -83148152 + ORR1D2 LTR MaLR 28 355 -4 8 1455 1076 66 15 0 chr1 114048593 114048729 -83146703 + B1_Mm SINE Alu 1 138 -9 8 1455 185 0 40 0 chr1 114048850 114048875 -83146557 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1455 1593 226 13 44 chr1 114049132 114049521 -83145911 - ORR1C1 LTR MaLR 0 378 2 8 1455 203 103 26 0 chr1 114049691 114049730 -83145702 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 8 1455 735 103 14 14 chr1 114050717 114050855 -83144577 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 8 1455 4783 211 60 20 chr1 114051494 114052585 -83142847 - Lx4A LINE L1 0 7058 5925 8 1455 2440 182 39 20 chr1 114052588 114053077 -83142355 - RLTR16 LTR ERVK -1 504 7 8 1455 3570 173 70 3 chr1 114053085 114053893 -83141539 - Lx4A LINE L1 -1132 5926 5070 8 1455 517 165 0 0 chr1 114054368 114054453 -83140979 - RLTR11A2 LTR ERVK -442 85 1 8 1455 5224 170 144 71 chr1 114054453 114054940 -83140492 - Lx4A LINE L1 -854 5023 4622 8 1455 195 42 0 0 chr1 114054940 114054964 -83140468 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1455 5224 171 142 70 chr1 114054964 114055927 -83139505 - Lx4A LINE L1 -1256 4621 3482 8 1455 424 284 61 71 chr1 114055917 114056129 -83139303 - Lx2B LINE L1 0 7000 6791 9 1455 1146 247 19 0 chr1 114056134 114056393 -83139039 - Lx2B LINE L1 -317 6683 6420 9 1455 10578 170 25 25 chr1 114056402 114056828 -83138604 - Lx4A LINE L1 -2438 3439 3022 8 1455 783 123 0 161 chr1 114056828 114057002 -83138430 + B1_Mus1 SINE Alu 2 147 -1 9 1455 603 0 0 0 chr1 114057002 114057069 -83138363 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 9 1455 10578 170 25 25 chr1 114057069 114057525 -83137907 - Lx4A LINE L1 -2856 3021 2555 8 1455 198 0 0 0 chr1 114057525 114057547 -83137885 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 9 1455 10578 198 68 19 chr1 114057547 114059501 -83135931 - Lx4A LINE L1 -3323 2554 507 8 1455 21 82 0 0 chr1 114059641 114059690 -83135742 + AT_rich Low_complexity Low_complexity 1 49 0 9 1455 1008 180 50 36 chr1 114060963 114061111 -83134321 + RLTR11A LTR ERVK 307 456 -72 9 1455 459 0 0 0 chr1 114061111 114061162 -83134270 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1455 1008 180 50 36 chr1 114061162 114061232 -83134200 + RLTR11A LTR ERVK 457 528 0 9 1455 4954 263 71 50 chr1 114061232 114063073 -83132359 + Lx7 LINE L1 5493 7390 -306 9 1455 192 40 0 0 chr1 114063073 114063098 -83132334 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1455 4954 271 72 60 chr1 114063098 114063334 -83132098 + Lx7 LINE L1 7391 7595 -101 9 1455 22 0 0 0 chr1 114063385 114063407 -83132025 + AT_rich Low_complexity Low_complexity 1 22 0 9 1455 706 243 91 136 chr1 114063579 114063735 -83131697 + L1_Mur3 LINE L1 4009 4162 -1718 1 1455 1081 89 0 27 chr1 114063735 114063885 -83131547 + B1_Mus2 SINE Alu 2 147 0 1 1455 706 243 91 136 chr1 114063885 114064170 -83131262 + L1_Mur3 LINE L1 4163 4430 -1450 1 1455 1069 196 0 5 chr1 114064168 114064378 -83131054 - L1_Mm LINE L1 -888 4995 4787 1 1455 9041 2 0 0 chr1 114064385 114066074 -83129358 - L1Md_A LINE L1 0 6582 4894 1 1455 770 190 42 30 chr1 114066079 114066247 -83129185 + ORR1B1 LTR MaLR 67 236 -158 1 1455 304 315 40 94 chr1 114066265 114066489 -83128943 - MER63D DNA AcHobo -748 313 102 1 1455 3232 136 8 4 chr1 114066490 114067022 -83128410 - L1_Mus4 LINE L1 -7 6629 6096 1 1455 2047 99 0 0 chr1 114067022 114067315 -83128117 - Lx LINE L1 -748 5906 5614 1 1455 551 232 127 29 chr1 114067352 114067627 -83127805 - L1_Mur3 LINE L1 -6538 1174 873 1 1455 1306 244 65 56 chr1 114067878 114068234 -83127198 + ORR1B2 LTR MaLR 1 359 -8 1 1455 413 323 26 31 chr1 114068239 114068431 -83127001 + Lx8 LINE L1 6790 6980 -493 1 1455 1306 244 65 56 chr1 114068522 114068878 -83126554 - ORR1B2 LTR MaLR -8 359 1 1 1455 551 232 127 29 chr1 114069129 114069404 -83126028 + L1_Mur3 LINE L1 873 1174 -6538 1 1455 2047 99 0 0 chr1 114069441 114069734 -83125698 + Lx LINE L1 5614 5906 -748 1 1455 3232 136 8 4 chr1 114069734 114070266 -83125166 + L1_Mus4 LINE L1 6096 6629 -7 1 1455 304 315 40 94 chr1 114070267 114070491 -83124941 + MER63D DNA AcHobo 102 313 -748 1 1455 770 190 42 30 chr1 114070509 114070677 -83124755 - ORR1B1 LTR MaLR -158 236 67 1 1455 6170 6 0 0 chr1 114070682 114071375 -83124057 + L1Md_A LINE L1 4894 5586 -297 1 1455 9029 2 0 0 chr1 114071375 114072371 -83123061 + L1Md_A LINE L1 5587 6582 0 1 1455 26 30 0 0 chr1 114072811 114072844 -83122588 + AT_rich Low_complexity Low_complexity 1 33 0 1 1455 410 314 8 0 chr1 114072866 114072984 -83122448 + B1F SINE Alu 31 149 0 1 1455 2929 34 6 0 chr1 114073003 114073358 -83122074 + L1Md_F2 LINE L1 6211 6567 -15 1 1455 264 331 55 48 chr1 114073432 114073578 -83121854 - ID_B1 SINE B4 0 224 78 1 1455 495 33 0 0 chr1 114073722 114073783 -83121649 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1455 22 0 0 0 chr1 114073991 114074013 -83121419 + AT_rich Low_complexity Low_complexity 1 22 0 1 1455 2548 199 18 0 chr1 114074222 114074710 -83120722 + Lx3C LINE L1 6334 6830 -146 1 1455 346 185 438 0 chr1 114074993 114075138 -83120294 + Lx9 LINE L1 7425 7632 -12 1 1455 300 311 81 40 chr1 114075157 114075281 -83120151 - B4A SINE B4 -156 136 8 1 1455 2805 226 18 33 chr1 114075907 114076511 -83118921 + RLTR17 LTR ERVK 98 692 0 1 1455 1140 252 89 67 chr1 114076511 114076974 -83118458 + RMER3D-int LTR ERVK 1 473 -2369 1 1455 265 273 25 25 chr1 114076987 114077066 -83118366 + RMER3D-int LTR ERVK 196 274 -2568 1 1455 441 153 94 0 chr1 114077097 114077182 -83118250 + RMER3D-int LTR ERVK 476 568 -2274 1 1455 6091 194 60 56 chr1 114077194 114078854 -83116578 + RMER3D-int LTR ERVK 1170 2835 -7 1 1455 2940 170 26 19 chr1 114078885 114079418 -83116014 + RLTR17 LTR ERVK 99 635 -57 1 1455 249 108 0 0 chr1 114079440 114079477 -83115955 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1455 704 298 93 36 chr1 114079967 114080332 -83115100 - Lx8 LINE L1 -5 7468 7083 1 1455 361 308 34 7 chr1 114080379 114080526 -83114906 + Lx8 LINE L1 6737 6887 -586 1 1455 22 35 0 0 chr1 114080673 114080702 -83114730 + AT_rich Low_complexity Low_complexity 1 29 0 1 1455 879 43 0 0 chr1 114080833 114080949 -83114483 + (GA)n Simple_repeat Simple_repeat 1 116 0 1 1455 1689 57 18 4 chr1 114081227 114081456 -83113976 - L1_Mus3 LINE L1 -6 6632 6401 1 1455 1095 108 0 0 chr1 114083020 114083168 -83112264 - B1_Mus1 SINE Alu 0 148 1 1 1455 258 298 73 34 chr1 114083169 114083346 -83112086 - L1M2 LINE L1 -782 5518 5335 1 1455 3361 107 0 22 chr1 114084117 114084625 -83110807 - L1Md_F2 LINE L1 0 6582 6086 1 1455 22 35 0 0 chr1 114085011 114085040 -83110392 + AT_rich Low_complexity Low_complexity 1 29 0 1 1455 275 111 0 69 chr1 114085089 114085147 -83110285 - Lx6 LINE L1 -4 7456 7403 1 1455 26 50 0 0 chr1 114085787 114085827 -83109605 + AT_rich Low_complexity Low_complexity 1 40 0 1 1455 245 162 0 0 chr1 114086037 114086074 -83109358 - tRNA-Ser-AGY tRNA tRNA -46 39 3 1 1455 6063 169 31 46 chr1 114086081 114087815 -83107617 + Lx2A LINE L1 4685 6383 -625 1 1455 248 0 0 30 chr1 114087815 114087848 -83107584 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1455 6063 150 19 16 chr1 114087848 114088113 -83107319 + Lx2A LINE L1 6384 6662 -346 1 1455 269 172 16 0 chr1 114088366 114088430 -83107002 + GA-rich Low_complexity Low_complexity 2 66 0 1 1455 222 193 0 0 chr1 114088471 114088528 -83106904 + GA-rich Low_complexity Low_complexity 2 58 0 1 1455 742 89 27 14 chr1 114088554 114088702 -83106730 + (TAGA)n Simple_repeat Simple_repeat 3 152 0 1 1455 3540 268 49 96 chr1 114088739 114089838 -83105594 + L1_Mur3 LINE L1 58 1111 -6617 1 1455 261 0 0 0 chr1 114089838 114089867 -83105565 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1455 3540 268 49 96 chr1 114089867 114089915 -83105517 + L1_Mur3 LINE L1 1112 1139 -6589 1 1455 2943 33 8 0 chr1 114089915 114090276 -83105156 + L1Md_F2 LINE L1 6218 6581 -1 1 1455 3540 268 49 96 chr1 114090276 114090394 -83105038 + L1_Mur3 LINE L1 1140 1245 -6483 1 1455 718 65 18 9 chr1 114090394 114090503 -83104929 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 1 1455 3540 221 34 15 chr1 114090503 114090981 -83104451 + L1_Mur3 LINE L1 1246 1746 -4134 1 1455 5267 188 16 16 chr1 114090960 114091584 -83103848 + L1_Mm LINE L1 4363 4984 -899 1 1455 270 0 0 0 chr1 114091584 114091614 -83103818 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1455 5267 188 16 16 chr1 114091614 114092080 -83103352 + L1_Mm LINE L1 4985 5454 -429 1 1455 3807 222 47 96 chr1 114092558 114094062 -83101370 - ORR1B1-int LTR MaLR -2 1961 1 1 1455 456 279 32 16 chr1 114094140 114094264 -83101168 - MT2B LTR ERVL -342 259 134 1 1455 7085 90 6 4 chr1 114094275 114095256 -83100176 - L1Md_F2 LINE L1 -156 5727 4745 1 1455 6186 81 20 7 chr1 114095258 114096119 -83099313 + L1Md_F2 LINE L1 5711 6582 0 1 1455 477 368 18 5 chr1 114096122 114096343 -83099089 + Lx8 LINE L1 6528 6751 -722 1 1455 10741 96 27 10 chr1 114096381 114098700 -83096732 - L1Md_F LINE L1 -3143 2740 380 1 1455 251 282 47 12 chr1 114098729 114098815 -83096617 - Lx8 LINE L1 -957 6516 6428 1 1455 3427 221 51 87 chr1 114098855 114099790 -83095642 - RMER19B LTR ERVK 0 902 1 1 1455 644 281 39 15 chr1 114099790 114099996 -83095436 - Lx9 LINE L1 -629 7015 6805 1 1455 234 0 0 0 chr1 114100080 114100106 -83095326 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1455 204 67 0 0 chr1 114101771 114101801 -83093631 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1455 257 151 19 0 chr1 114101810 114101863 -83093569 + G-rich Low_complexity Low_complexity 3 56 0 1 1455 24 32 0 0 chr1 114103228 114103259 -83092173 + AT_rich Low_complexity Low_complexity 1 31 0 1 1455 643 338 54 17 chr1 114103516 114103935 -83091497 - Lx8 LINE L1 -46 7427 6978 1 1455 18038 162 58 23 chr1 114103943 114105512 -83089920 - Lx3C LINE L1 -2 6974 5260 1 1455 273 57 0 0 chr1 114105512 114105547 -83089885 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1455 18038 165 40 48 chr1 114105547 114107329 -83088103 - Lx3C LINE L1 -627 5259 3490 1 1455 450 49 0 0 chr1 114107329 114107390 -83088042 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 1 1455 18038 165 40 48 chr1 114107390 114108762 -83086670 - Lx3C LINE L1 -2397 3489 2225 1 1455 1057 88 7 0 chr1 114108762 114108899 -83086533 - B1_Mus2 SINE Alu -7 140 3 1 1455 18038 165 40 48 chr1 114108899 114109081 -83086351 - Lx3C LINE L1 -3662 2224 2043 1 1455 616 262 33 26 chr1 114109084 114109237 -83086195 - MTC LTR MaLR -267 154 1 1 1455 750 210 119 4 chr1 114110234 114110478 -83084954 + L1_Mur3 LINE L1 3552 3823 -2057 1 1455 37833 30 0 0 chr1 114110679 114117314 -83078118 - L1Md_T LINE L1 0 6585 2 1 1455 2705 178 36 16 chr1 114117525 114118163 -83077269 + L1_Mur3 LINE L1 3826 4476 -1404 1 1455 5275 121 64 50 chr1 114119532 114120835 -83074597 - L1_Mus2 LINE L1 0 6566 5240 1 1455 734 82 0 30 chr1 114120836 114120936 -83074496 - RLTR1B-int LTR ERV1 -534 2765 2669 1 1455 2497 96 12 11 chr1 114120923 114121483 -83073949 - RLTR1B-int LTR ERV1 -916 2782 2219 1 1455 274 75 25 0 chr1 114121473 114121513 -83073919 - MuRRS4-int LTR ERV1 -2349 2714 2674 1 1455 745 323 21 28 chr1 114121512 114121837 -83073595 + MuRRS4-int LTR ERV1 3824 4146 -917 1 1455 889 221 40 13 chr1 114121929 114122154 -83073278 + MuRRS4-int LTR ERV1 4791 5021 -42 1 1455 3212 79 49 17 chr1 114122157 114122623 -83072809 + LTRIS2 LTR ERV1 5 485 -79 1 1455 217 0 0 57 chr1 114122631 114122666 -83072766 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1455 251 277 118 24 chr1 114122802 114122887 -83072545 + PB1 SINE Alu 27 119 -8 1 1455 216 64 0 60 chr1 114123669 114123719 -83071713 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 1 1455 4650 145 23 0 chr1 114123724 114124476 -83070956 - Lx2 LINE L1 -2 6995 6227 1 1455 2388 197 183 21 chr1 114124480 114125096 -83070336 - L1VL4 LINE L1 -5394 908 193 1 1455 921 54 139 0 chr1 114125417 114125546 -83069886 + B1_Mm SINE Alu 1 147 0 1 1455 220 264 11 22 chr1 114125558 114125647 -83069785 + (TAAA)n Simple_repeat Simple_repeat 2 89 0 1 1455 423 38 0 0 chr1 114125905 114125958 -83069474 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1455 3449 20 2 0 chr1 114126180 114126575 -83068857 - MTA_Mm LTR MaLR 0 396 1 1 1455 30 27 0 0 chr1 114127094 114127131 -83068301 + AT_rich Low_complexity Low_complexity 1 37 0 1 1455 252 0 0 0 chr1 114127221 114127249 -83068183 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1 1455 22 70 0 0 chr1 114127337 114127380 -83068052 + AT_rich Low_complexity Low_complexity 1 43 0 1 1455 996 99 0 13 chr1 114127561 114127714 -83067718 - L1Md_F2 LINE L1 -10 6572 6422 1 1455 192 325 123 12 chr1 114127738 114127819 -83067613 - L2b LINE L2 -96 3279 3190 1 1455 720 225 63 6 chr1 114127985 114128159 -83067273 + ORR1B1 LTR MaLR 209 392 -2 1 1455 4892 200 57 137 chr1 114128161 114129670 -83065762 + ORR1B1-int LTR MaLR 1 1402 -561 1 1455 3039 26 0 0 chr1 114129670 114130016 -83065416 - ORR1A0 LTR MaLR 0 346 1 1 1455 13731 58 12 1 chr1 114130018 114131788 -83063644 - ORR1A0-int LTR MaLR -2 1790 1 1 1455 3065 20 0 0 chr1 114131788 114132134 -83063298 - ORR1A0 LTR MaLR 0 346 1 1 1455 13731 58 12 1 chr1 114132136 114133906 -83061526 - ORR1A0-int LTR MaLR -2 1790 1 1 1455 3065 20 0 0 chr1 114133906 114134252 -83061180 - ORR1A0 LTR MaLR 0 346 1 1 1455 13731 58 12 1 chr1 114134254 114136024 -83059408 - ORR1A0-int LTR MaLR -2 1790 1 1 1455 3065 20 0 0 chr1 114136024 114136370 -83059062 - ORR1A0 LTR MaLR 0 346 1 1 1455 4892 200 57 137 chr1 114136370 114136422 -83059010 + ORR1B1-int LTR MaLR 1403 1445 -518 1 1455 282 148 0 0 chr1 114137948 114138002 -83057430 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 1455 3793 117 12 27 chr1 114138383 114138820 -83056612 - MT2B2 LTR ERVL 0 584 156 1 1455 1777 78 0 0 chr1 114138820 114139051 -83056381 - L1_Mus1 LINE L1 0 6567 6337 1 1455 3793 117 12 27 chr1 114139051 114139201 -83056231 - MT2B2 LTR ERVL -429 155 6 1 1455 1597 182 75 78 chr1 114139210 114139503 -83055929 - RLTR23 LTR ERV1 -33 397 91 1 1455 274 17 67 33 chr1 114139503 114139563 -83055869 + (TTTG)n Simple_repeat Simple_repeat 4 65 0 1 1455 1597 182 75 78 chr1 114139563 114139667 -83055765 - RLTR23 LTR ERV1 -340 90 1 1 1455 72 32 0 0 chr1 114139707 114139800 -83055632 + AT_rich Low_complexity Low_complexity 1 93 0 1 1455 230 312 78 28 chr1 114139809 114139951 -83055481 - RLTR15 LTR ERVK -73 286 138 2 1455 338 366 55 0 chr1 114140113 114140296 -83055136 - Lx9 LINE L1 -193 7451 7259 2 1455 315 175 0 0 chr1 114140405 114140462 -83054970 + URR1B DNA MER1_type 109 165 -60 2 1455 480 170 0 0 chr1 114141426 114141561 -83053871 + GA-rich Low_complexity Low_complexity 2 136 0 2 1455 2463 205 42 128 chr1 114142678 114143160 -83052272 + RMER6A LTR ERVK 57 455 -301 2 1455 1214 79 34 11 chr1 114143160 114143339 -83052093 + B2_Mm2 SINE B2 4 186 -9 2 1455 2463 205 42 128 chr1 114143339 114143622 -83051810 + RMER6A LTR ERVK 456 756 0 2 1455 1580 274 90 5 chr1 114144100 114144853 -83050579 - Lx9 LINE L1 -495 7149 6333 2 1455 415 186 54 29 chr1 114145037 114145169 -83050263 - MTE-int LTR MaLR -75 1434 1183 2 1455 353 322 32 40 chr1 114145187 114145313 -83050119 + B3A SINE B2 2 126 -72 2 1455 552 404 37 6 chr1 114145518 114145844 -83049588 - MTE-int LTR MaLR -255 1325 990 2 1455 745 325 52 73 chr1 114145907 114146236 -83049196 - ORR1D1 LTR MaLR -13 361 40 2 1455 1697 344 88 24 chr1 114146244 114147149 -83048283 - MTE-int LTR MaLR -617 963 1 2 1455 791 368 47 3 chr1 114147215 114147512 -83047920 - MTE2b LTR MaLR -69 310 1 2 1455 23 0 0 0 chr1 114148019 114148042 -83047390 + AT_rich Low_complexity Low_complexity 1 23 0 2 1455 283 202 178 75 chr1 114149699 114149806 -83045626 + PB1D9 SINE Alu 2 119 -1 2 1455 1494 33 0 0 chr1 114149901 114150081 -83045351 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1455 32 26 0 0 chr1 114150421 114150460 -83044972 + AT_rich Low_complexity Low_complexity 1 39 0 2 1455 402 125 0 0 chr1 114150484 114150564 -83044868 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1455 243 0 0 0 chr1 114150564 114150591 -83044841 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1455 450 53 0 0 chr1 114150701 114150758 -83044674 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1455 273 98 0 0 chr1 114150758 114150798 -83044634 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1455 912 321 31 15 chr1 114151058 114151384 -83044048 - Lx6 LINE L1 -180 7280 6950 2 1455 248 111 0 22 chr1 114151394 114151440 -83043992 + (TCTCCC)n Simple_repeat Simple_repeat 2 46 0 2 1455 36 70 0 0 chr1 114152059 114152130 -83043302 + AT_rich Low_complexity Low_complexity 1 71 0 2 1455 3714 178 50 45 chr1 114152154 114152693 -83042739 - L1_Mur1 LINE L1 -3765 2121 1577 2 1455 243 0 0 0 chr1 114152693 114152720 -83042712 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1455 3714 182 47 33 chr1 114152720 114153436 -83041996 - L1_Mur1 LINE L1 -4310 1576 864 2 1455 2813 31 0 3 chr1 114153436 114153764 -83041668 - IAPLTR2b LTR ERVK 0 327 1 2 1455 2478 188 43 21 chr1 114153764 114153867 -83041565 - L1_Mur1 LINE L1 -6121 863 742 2 1455 258 304 11 0 chr1 114153974 114154066 -83041366 - L1_Mur1 LINE L1 -6228 756 664 2 1455 1305 335 30 64 chr1 114154337 114155356 -83040076 + Lx9 LINE L1 6307 7291 -353 2 1455 202 306 0 0 chr1 114155561 114155633 -83039799 + (TCTG)n Simple_repeat Simple_repeat 1 72 0 2 1455 183 80 0 0 chr1 114155635 114155660 -83039772 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1455 21 0 0 0 chr1 114155840 114155861 -83039571 + AT_rich Low_complexity Low_complexity 1 21 0 2 1455 275 216 0 26 chr1 114156030 114156106 -83039326 + Lx8 LINE L1 7398 7471 -2 2 1455 394 374 50 42 chr1 114156338 114156598 -83038834 - B4A SINE B4 -28 264 3 2 1455 235 307 53 139 chr1 114156931 114157139 -83038293 - MTE2b LTR MaLR -21 358 169 2 1455 875 181 55 114 chr1 114157343 114157580 -83037852 - MT2A LTR ERVL -310 223 1 2 1455 256 305 15 10 chr1 114157596 114157693 -83037739 + MT2B2 LTR ERVL 382 481 -120 2 1455 596 264 0 7 chr1 114158533 114158678 -83036754 + RMER12 LTR ERVK 783 926 -396 2 1455 334 240 144 0 chr1 114158717 114158821 -83036611 + RMER12 LTR ERVK 1071 1189 -133 2 1455 1154 75 0 0 chr1 114159101 114159247 -83036185 + B1_Mus1 SINE Alu 3 148 0 2 1455 251 160 20 0 chr1 114159682 114159732 -83035700 + RMER16-int LTR ERVK 299 349 -5057 2 1455 1271 145 0 14 chr1 114159868 114160085 -83035347 + RLTR19-int LTR ERVK 3490 3703 -2434 2 1455 2352 204 42 22 chr1 114160110 114160652 -83034780 + RLTR19-int LTR ERVK 3799 4351 -1786 2 1455 2342 74 9 33 chr1 114160949 114161284 -83034148 - IAPLTR2b LTR ERVK 0 327 1 2 181 53731 28 13 21 chr1 114161286 114167900 -83027532 - IAPEz-int LTR ERVK -2 6479 9 2 1456 2348 74 9 33 chr1 114167901 114168236 -83027196 - IAPLTR2b LTR ERVK 0 327 1 2 1456 342 0 0 0 chr1 114169931 114169969 -83025463 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1456 2664 165 19 58 chr1 114170249 114170833 -83024599 - RLTR31_Mm LTR ERVK 0 561 1 2 1456 21249 138 38 8 chr1 114172055 114175884 -83019548 + MusHAL1 LINE L1 1151 5104 -779 2 1456 35685 41 3 7 chr1 114175873 114181056 -83014376 + L1Md_A LINE L1 433 5585 -298 2 1456 25449 95 4 46 chr1 114181054 114184205 -83011227 - L1Md_F LINE L1 -797 5086 2065 2 1456 1509 48 27 0 chr1 114184205 114184391 -83011041 - B2_Mm1t SINE B2 -1 192 2 2 1456 25449 112 21 32 chr1 114184391 114186084 -83009348 - L1Md_F LINE L1 -3819 2064 392 2 1456 305 328 51 44 chr1 114186114 114186251 -83009181 - B1F SINE Alu -1 148 11 2 1456 229 295 73 7 chr1 114186379 114186529 -83008903 - L1M2 LINE L1 -816 5484 5325 2 1456 210 217 0 0 chr1 114186759 114186828 -83008604 + (TATG)n Simple_repeat Simple_repeat 4 72 0 2 1456 5358 251 60 31 chr1 114186989 114188615 -83006817 - MYSERV6-int LTR ERVK -5674 3285 1611 2 1456 234 0 0 0 chr1 114188615 114188641 -83006791 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 2 1456 5358 251 60 31 chr1 114188641 114188826 -83006606 - MYSERV6-int LTR ERVK -7349 1610 1423 2 1456 192 40 0 0 chr1 114188871 114188896 -83006536 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2 1456 1389 305 23 32 chr1 114188950 114189567 -83005865 - MYSERV6-int LTR ERVK -7674 1285 675 2 1456 3135 165 47 12 chr1 114189568 114190163 -83005269 + Lx2 LINE L1 5852 6467 -530 2 1456 1884 188 22 56 chr1 114190182 114191050 -83004382 + MMETn-int LTR ERVK 1989 3141 -1703 2 1456 424 111 0 53 chr1 114191253 114191329 -83004103 + MMETn-int LTR ERVK 7331 7402 -4 2 1456 1771 154 52 89 chr1 114191334 114191740 -83003692 + RLTR9C LTR ERVK 1 391 -2 2 1456 2964 146 47 2 chr1 114191748 114192255 -83003177 + Lx LINE L1 6124 6653 -1 2 1456 338 100 0 16 chr1 114192695 114192756 -83002676 + (TTTTG)n Simple_repeat Simple_repeat 3 62 0 2 1456 2628 194 19 21 chr1 114193767 114194330 -83001102 - RLTR12A LTR ERVK -4 564 3 2 1456 685 113 0 0 chr1 114194796 114194893 -83000539 - Lx3B LINE L1 -169 6804 6708 2 1456 269 143 75 38 chr1 114194880 114194960 -83000472 + Lx3C LINE L1 6846 6928 -48 2 1456 1542 266 51 21 chr1 114195408 114195950 -82999482 - RMER13A LTR ERVK 0 860 303 2 1456 219 103 0 0 chr1 114197345 114197384 -82998048 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 2 1456 22 35 0 0 chr1 114197940 114197969 -82997463 + AT_rich Low_complexity Low_complexity 1 29 0 2 1456 814 257 6 11 chr1 114198835 114199016 -82996416 - MTC LTR MaLR 0 421 242 2 1456 1176 237 36 21 chr1 114199001 114199281 -82996151 + RLTR20B1 LTR ERVK 188 471 -92 2 1456 3790 160 73 28 chr1 114199285 114200115 -82995317 + Lx2B LINE L1 3365 4232 -1654 2 1456 29423 123 19 3 chr1 114200122 114206097 -82989335 + L1_Mus1 LINE L1 425 6507 -60 2 1456 6930 193 26 5 chr1 114206102 114208059 -82987373 + Lx2B LINE L1 5011 6996 -4 2 1456 880 162 6 16 chr1 114208062 114208244 -82987188 + GA-rich Low_complexity Low_complexity 1 180 0 2 1456 24 77 0 0 chr1 114208326 114208378 -82987054 + AT_rich Low_complexity Low_complexity 1 52 0 2 1456 209 109 0 83 chr1 114208563 114208623 -82986809 + A-rich Low_complexity Low_complexity 1 55 0 2 1456 4405 146 19 22 chr1 114208849 114208867 -82986565 - Lx2 LINE L1 -501 6496 6483 2 1456 893 127 50 13 chr1 114208867 114209026 -82986406 - Lx2 LINE L1 -7 6990 6826 2 1456 4405 146 19 22 chr1 114209026 114209764 -82985668 - Lx2 LINE L1 -515 6482 5743 2 1456 270 0 0 0 chr1 114209993 114210023 -82985409 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1456 234 0 0 0 chr1 114210023 114210049 -82985383 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1456 300 111 0 0 chr1 114210049 114210094 -82985338 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1456 26 0 0 0 chr1 114210590 114210616 -82984816 + AT_rich Low_complexity Low_complexity 1 26 0 2 1456 369 0 0 0 chr1 114210707 114210748 -82984684 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1456 996 224 217 45 chr1 114210938 114211251 -82984181 - ORR1B2 LTR MaLR 0 367 1 2 1456 542 66 13 0 chr1 114211846 114211922 -82983510 - B1_Mus2 SINE Alu 0 147 71 2 1456 585 62 0 0 chr1 114211924 114212005 -82983427 + L1_Mus1 LINE L1 6486 6566 -1 2 1456 948 190 0 7 chr1 114212008 114212289 -82983143 + GA-rich Low_complexity Low_complexity 1 279 0 2 1456 441 63 16 0 chr1 114212290 114212353 -82983079 - B1_Mus1 SINE Alu -83 65 2 2 1456 1167 242 106 113 chr1 114213543 114214074 -82981358 - RLTR24 LTR ERV1 -2 527 1 2 1456 210 175 0 24 chr1 114214245 114214286 -82981146 + GA-rich Low_complexity Low_complexity 3 42 0 2 1456 23 33 0 0 chr1 114214478 114214508 -82980924 + AT_rich Low_complexity Low_complexity 1 30 0 2 1456 186 191 0 0 chr1 114214608 114214655 -82980777 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1456 33 0 0 0 chr1 114215639 114215672 -82979760 + AT_rich Low_complexity Low_complexity 1 33 0 2 1456 258 374 72 31 chr1 114215751 114215944 -82979488 - B3 SINE B2 -4 212 12 2 1456 333 0 0 0 chr1 114216675 114216712 -82978720 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1456 447 19 0 0 chr1 114216715 114216767 -82978665 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1456 285 77 30 30 chr1 114217288 114217355 -82978077 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 1456 1115 82 0 0 chr1 114217382 114217528 -82977904 - B1_Mus1 SINE Alu -2 146 1 2 1456 233 263 18 0 chr1 114217920 114217977 -82977455 - MER103 DNA DNA -71 95 38 2 1456 23 0 0 0 chr1 114219003 114219026 -82976406 + AT_rich Low_complexity Low_complexity 1 23 0 2 1456 8744 103 11 0 chr1 114219167 114220521 -82974911 + L1_Mur1 LINE L1 3298 4666 -1220 2 1456 443 240 62 0 chr1 114220541 114220558 -82974874 - L1_Mur3 LINE L1 -1704 4182 4163 2 1456 2327 130 0 0 chr1 114220558 114220911 -82974521 - L1_Mus4 LINE L1 -1 6635 6283 2 1456 619 155 37 0 chr1 114220911 114221022 -82974410 - L1_Mur3 LINE L1 -1724 4162 4038 2 1456 2167 285 51 26 chr1 114221028 114222275 -82973157 + RMER1B Other Other 1 1055 -11 2 1456 25 0 0 0 chr1 114222296 114222321 -82973111 + AT_rich Low_complexity Low_complexity 1 25 0 2 1456 256 200 44 66 chr1 114222366 114222457 -82972975 + MTE2a LTR MaLR 291 379 0 2 1456 351 44 0 0 chr1 114222485 114222530 -82972902 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1456 255 341 28 42 chr1 114222733 114222877 -82972555 - Lx6 LINE L1 -48 7412 7271 2 1456 903 284 20 20 chr1 114223442 114223690 -82971742 - RMER15 LTR ERVL -2 573 326 3 1456 1022 358 44 0 chr1 114223707 114224045 -82971387 + MTE2a LTR MaLR 9 361 -18 3 1456 315 0 0 0 chr1 114224053 114224088 -82971344 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 1456 200 128 0 25 chr1 114224970 114225010 -82970422 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3 1456 919 118 100 0 chr1 114225181 114225351 -82970081 - B2_Mm2 SINE B2 -6 189 3 3 1456 32 0 0 0 chr1 114225554 114225586 -82969846 + AT_rich Low_complexity Low_complexity 1 32 0 3 1456 9041 1 0 0 chr1 114226171 114227690 -82967742 - L1Md_A LINE L1 0 6582 5064 3 1456 386 307 174 9 chr1 114228110 114228304 -82967128 + RMER1A Other Other 115 461 -569 3 1456 2397 35 31 6 chr1 114228638 114228955 -82966477 - IAPEY2_LTR LTR ERVK 0 357 33 3 1456 419 155 0 12 chr1 114229178 114229263 -82966169 + GA-rich Low_complexity Low_complexity 1 84 0 3 1456 2195 168 8 8 chr1 114229485 114229851 -82965581 + Lx4A LINE L1 6686 7051 -7 3 1456 31 68 0 0 chr1 114229851 114229910 -82965522 + AT_rich Low_complexity Low_complexity 1 59 0 3 1456 227 164 16 0 chr1 114230007 114230068 -82965364 + GA-rich Low_complexity Low_complexity 2 63 0 3 1456 6816 89 4 4 chr1 114230087 114231033 -82964399 + L1_Mus3 LINE L1 5686 6631 -7 3 1456 2855 65 2 65 chr1 114231510 114231924 -82963508 + RLTR10 LTR ERVK 1 388 -2 3 1456 64 26 0 0 chr1 114232082 114232160 -82963272 + AT_rich Low_complexity Low_complexity 1 78 0 3 1456 11197 124 18 40 chr1 114232795 114234683 -82960749 + RLTR22_Mur LTR ERVK 3 1848 0 3 1456 559 71 24 0 chr1 114234752 114234837 -82960595 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 1456 5256 152 40 13 chr1 114234837 114236393 -82959039 - Lx LINE L1 -255 6399 4806 3 1456 1666 106 48 8 chr1 114236466 114236714 -82958718 - L1Md_F2 LINE L1 -12 6570 6313 3 1456 24 0 0 0 chr1 114236837 114236861 -82958571 + AT_rich Low_complexity Low_complexity 1 24 0 3 1456 342 0 0 0 chr1 114236899 114236937 -82958495 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 1456 1011 119 7 0 chr1 114236937 114237080 -82958352 - B1_Mus1 SINE Alu -2 146 3 3 1456 1289 207 82 45 chr1 114237312 114237705 -82957727 - RMER16 LTR ERVK 0 533 1 3 1456 3575 165 59 5 chr1 114237705 114238352 -82957080 - RMER16-int LTR ERVK 0 5406 4725 3 1456 9011 147 51 17 chr1 114238343 114240004 -82955428 - RMER16-int LTR ERVK -1150 4256 2539 3 1456 28 0 0 0 chr1 114240095 114240123 -82955309 + AT_rich Low_complexity Low_complexity 1 28 0 3 1456 24 0 0 0 chr1 114240226 114240250 -82955182 + AT_rich Low_complexity Low_complexity 1 24 0 3 1456 2606 208 33 57 chr1 114240627 114241260 -82954172 + Lx2 LINE L1 6380 6997 0 3 1456 29 47 0 0 chr1 114241402 114241445 -82953987 + AT_rich Low_complexity Low_complexity 1 43 0 3 1456 62 64 0 21 chr1 114241561 114241705 -82953727 + AT_rich Low_complexity Low_complexity 1 141 0 3 1456 334 158 46 18 chr1 114241723 114242010 -82953422 + (TA)n Simple_repeat Simple_repeat 1 295 0 3 1456 6908 161 69 23 chr1 114242072 114243801 -82951631 + Lx3B LINE L1 5206 6969 -4 3 1456 399 266 34 48 chr1 114245143 114245289 -82950143 - B1_Mur2 SINE Alu -1 148 5 3 1456 1196 48 0 0 chr1 114245446 114245593 -82949839 + B1_Mm SINE Alu 1 147 0 3 1456 192 77 0 0 chr1 114245797 114245823 -82949609 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1456 725 73 0 0 chr1 114245960 114246056 -82949376 + B2_Mm2 SINE B2 2 97 -98 3 1456 2838 37 48 0 chr1 114246058 114246412 -82949020 + L1Md_F2 LINE L1 6200 6570 -12 3 1456 5581 156 38 15 chr1 114246426 114247403 -82948029 + Lx LINE L1 5653 6651 -3 3 1456 2659 101 28 3 chr1 114249918 114250307 -82945125 - MT2C_Mm LTR ERVL -76 399 1 3 1456 587 147 0 10 chr1 114250664 114250767 -82944665 - L1_Mus4 LINE L1 -62 6574 6473 3 1456 669 25 0 0 chr1 114250917 114250996 -82944436 + (CATA)n Simple_repeat Simple_repeat 4 82 0 3 1456 2706 108 2 1 chr1 114251424 114251823 -82943609 - L1_Mus4 LINE L1 -683 5953 5585 3 1456 2951 89 96 21 chr1 114251823 114252294 -82943138 + L1_Mus4 LINE L1 6129 6634 -2 3 1456 21 0 0 0 chr1 114252711 114252732 -82942700 + AT_rich Low_complexity Low_complexity 1 21 0 3 1456 482 275 35 0 chr1 114252989 114253131 -82942301 + B1_Mur1 SINE Alu 3 149 0 3 1456 248 82 32 32 chr1 114253590 114253653 -82941779 + (CAAAA)n Simple_repeat Simple_repeat 4 66 0 3 1456 256 148 16 47 chr1 114254304 114254368 -82941064 - Lx9 LINE L1 -7 7637 7576 3 1456 243 0 0 0 chr1 114254630 114254657 -82940775 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1456 183 114 0 0 chr1 114255195 114255230 -82940202 + (TTTAA)n Simple_repeat Simple_repeat 5 39 0 3 1456 21 0 0 0 chr1 114255551 114255572 -82939860 + AT_rich Low_complexity Low_complexity 1 21 0 3 1456 1032 103 7 0 chr1 114256635 114256781 -82938651 - B1_Mus1 SINE Alu 0 148 2 3 1456 22 0 0 0 chr1 114256967 114256989 -82938443 + AT_rich Low_complexity Low_complexity 1 22 0 3 1456 21 0 0 0 chr1 114257879 114257900 -82937532 + AT_rich Low_complexity Low_complexity 1 21 0 3 1456 339 105 0 0 chr1 114258642 114258699 -82936733 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1456 767 128 8 0 chr1 114258793 114258910 -82936522 + IAPEz-int LTR ERVK 6362 6479 -2 3 1456 2345 71 15 21 chr1 114258912 114259241 -82936191 + IAPLTR2b LTR ERVK 1 327 0 3 1456 17631 157 19 8 chr1 114260234 114264118 -82931314 + Lx LINE L1 613 4541 -1342 3 1456 31141 86 22 2 chr1 114264115 114268827 -82926605 + L1Md_F2 LINE L1 769 5585 -298 3 1456 6957 103 1 9 chr1 114268828 114269815 -82925617 + L1Md_F2 LINE L1 5587 6565 -17 3 1456 6349 142 76 12 chr1 114269834 114271779 -82923653 + Lx LINE L1 4628 6649 -5 3 1456 2022 123 13 3 chr1 114271907 114272209 -82923223 + RLTR27 LTR ERVK 1 305 -4 3 1456 371 98 16 0 chr1 114272620 114272681 -82922751 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 3 1456 275 288 90 0 chr1 114273427 114273538 -82921894 + B1F2 SINE Alu 3 123 -26 3 1456 237 133 44 0 chr1 114274025 114274070 -82921362 + L1M5 LINE L1 5858 5904 -275 3 1456 184 200 43 22 chr1 114274782 114274828 -82920604 + L4 LINE RTE 103 149 -1880 3 1456 261 0 0 0 chr1 114278255 114278284 -82917148 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1456 369 165 0 0 chr1 114279062 114279159 -82916273 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1456 189 107 0 0 chr1 114279237 114279265 -82916167 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1456 334 309 14 0 chr1 114279410 114279549 -82915883 + (TG)n Simple_repeat Simple_repeat 2 142 0 3 1456 378 272 121 26 chr1 114280209 114280473 -82914959 + L1M4 LINE L1 5513 5801 -377 3 1456 253 226 94 38 chr1 114280540 114280646 -82914786 - MTEb LTR MaLR -31 348 237 3 1456 202 284 15 0 chr1 114280992 114281059 -82914373 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1456 294 29 0 0 chr1 114281059 114281094 -82914338 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1456 2273 180 38 106 chr1 114281580 114282181 -82913251 + RLTR21 LTR ERVK 812 1306 -266 3 1456 408 97 0 0 chr1 114282181 114282243 -82913189 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1456 2273 174 26 132 chr1 114282243 114282526 -82912906 + RLTR21 LTR ERVK 1296 1571 -1 3 1456 203 143 48 0 chr1 114284152 114284194 -82911238 + (TTATA)n Simple_repeat Simple_repeat 1 44 0 3 1456 368 270 62 9 chr1 114284923 114285035 -82910397 + B1F2 SINE Alu 3 120 -29 3 1456 452 288 140 11 chr1 114285480 114285666 -82909766 - B3 SINE B2 -6 210 1 3 1456 497 261 42 0 chr1 114285953 114286072 -82909360 + RSINE1 SINE B4 4 127 -38 3 1456 180 0 0 0 chr1 114286072 114286092 -82909340 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1456 232 319 86 26 chr1 114286736 114286774 -82908658 + B4 SINE B4 46 90 -202 3 1456 317 295 75 0 chr1 114286774 114286868 -82908564 + PB1D9 SINE Alu 1 106 -43 3 1456 240 312 56 28 chr1 114287153 114287295 -82908137 + RSINE1 SINE B4 3 148 -17 3 1456 356 276 32 65 chr1 114287367 114287491 -82907941 - B3 SINE B2 -1 215 96 3 1456 360 276 83 33 chr1 114287501 114287609 -82907823 + B1F1 SINE Alu 18 132 -17 3 1456 2157 169 17 43 chr1 114287609 114288072 -82907360 + RLTR11B LTR ERVK 3 453 0 3 1456 360 276 83 33 chr1 114288072 114288083 -82907349 + B1F1 SINE Alu 133 143 -6 3 1456 2258 204 17 33 chr1 114288212 114288729 -82906703 - Lx5 LINE L1 -3 7047 6539 3 1456 1704 109 16 94 chr1 114289010 114289131 -82906301 + L1VL4 LINE L1 645 769 -5533 3 1456 526 100 521 8 chr1 114289131 114289252 -82906180 + B2_Mm2 SINE B2 3 185 -10 3 1456 1171 85 11 6 chr1 114289252 114289430 -82906002 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1456 1704 109 16 94 chr1 114289430 114289681 -82905751 + L1VL4 LINE L1 770 988 -5314 3 1456 499 42 31 31 chr1 114290091 114290188 -82905244 + (TGAG)n Simple_repeat Simple_repeat 4 100 0 3 1456 283 234 16 0 chr1 114290824 114290888 -82904544 + L1_Mur3 LINE L1 524 588 -7124 3 1456 952 138 6 111 chr1 114291208 114291388 -82904044 + ORR1A2 LTR MaLR 1 161 -166 3 1456 230 234 62 0 chr1 114291385 114291449 -82903983 + B3 SINE B2 128 195 -21 3 1456 26 30 0 0 chr1 114291479 114291512 -82903920 + AT_rich Low_complexity Low_complexity 1 33 0 3 1457 231 297 11 0 chr1 114294961 114295052 -82900380 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1457 484 42 14 14 chr1 114295073 114295145 -82900287 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1457 1244 170 13 17 chr1 114295499 114295732 -82899700 - RLTR15 LTR ERVK -127 232 1 3 1457 222 37 0 0 chr1 114296158 114296185 -82899247 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1457 331 209 61 118 chr1 114296185 114296290 -82899142 - B1F2 SINE Alu -8 112 1 3 1457 243 0 0 0 chr1 114297023 114297050 -82898382 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1457 387 0 0 0 chr1 114297416 114297459 -82897973 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1457 30 77 0 0 chr1 114298316 114298381 -82897051 + AT_rich Low_complexity Low_complexity 1 65 0 3 1457 7006 47 2 3 chr1 114298628 114299535 -82895897 - L1Md_F2 LINE L1 0 6582 5677 3 1457 213 300 0 0 chr1 114299730 114299780 -82895652 - ID4 SINE ID 0 83 34 3 1457 203 189 0 0 chr1 114301593 114301630 -82893802 + T-rich Low_complexity Low_complexity 1 37 0 3 1457 213 65 0 0 chr1 114301672 114301703 -82893729 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1457 513 234 38 66 chr1 114301708 114301919 -82893513 - RMER17C LTR ERVK -139 271 67 4 1457 312 110 0 0 chr1 114302163 114302220 -82893212 + B1_Mur4 SINE Alu 64 150 0 4 1457 231 36 0 0 chr1 114303098 114303126 -82892306 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1457 1104 115 17 0 chr1 114303187 114303361 -82892071 - ORR1B1 LTR MaLR 0 394 218 4 1457 1067 275 23 8 chr1 114305192 114305456 -82889976 + ORR1D2 LTR MaLR 1 268 -102 4 1457 403 359 21 7 chr1 114305698 114305841 -82889591 + ID_B1 SINE B4 80 224 0 4 1457 417 275 63 48 chr1 114306749 114306875 -82888557 + B1F1 SINE Alu 10 137 -12 4 1457 1781 214 49 12 chr1 114307076 114307482 -82887950 - MTC LTR MaLR 0 421 1 4 1457 280 143 17 51 chr1 114307599 114307658 -82887774 + B1_Mur1 SINE Alu 93 149 0 4 1457 594 287 35 0 chr1 114307722 114307896 -82887536 + B3A SINE B2 2 181 -17 4 1457 183 309 122 61 chr1 114308879 114309010 -82886422 + MIRc SINE MIR 17 155 -113 4 1457 363 207 92 0 chr1 114309673 114309760 -82885672 - PB1D7 SINE Alu 0 120 26 4 1457 424 225 75 32 chr1 114310389 114310577 -82884855 + L1M4 LINE L1 4899 5094 -1052 4 1457 198 0 0 0 chr1 114310577 114310599 -82884833 + (ATATG)n Simple_repeat Simple_repeat 5 26 0 4 1457 469 226 56 35 chr1 114311555 114311697 -82883735 + B1_Mur4 SINE Alu 1 145 -5 4 1457 905 134 0 13 chr1 114311698 114311857 -82883575 + (GAA)n Simple_repeat Simple_repeat 1 157 0 4 1457 279 181 0 0 chr1 114311856 114311928 -82883504 + (ATGGTG)n Simple_repeat Simple_repeat 5 76 0 4 1457 594 267 213 43 chr1 114311957 114312192 -82883240 + B4A SINE B4 2 276 -16 4 1457 369 289 94 0 chr1 114312220 114312348 -82883084 - MIR SINE MIR -56 206 67 4 1457 228 328 0 0 chr1 114312398 114312462 -82882970 - L2a LINE L2 -20 3406 3343 4 1457 510 104 20 40 chr1 114312897 114312997 -82882435 - L1Md_F2 LINE L1 0 6582 6485 4 1457 276 77 0 0 chr1 114313744 114313783 -82881649 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1457 3431 80 2 4 chr1 114313787 114314241 -82881191 - L1_Mus4 LINE L1 -13 6623 6171 4 1457 351 179 0 0 chr1 114314632 114314699 -82880733 + GA-rich Low_complexity Low_complexity 2 68 0 4 1457 1242 100 0 0 chr1 114314699 114314879 -82880553 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1457 545 290 104 9 chr1 114314928 114315140 -82880292 + ORR1D2 LTR MaLR 137 368 -2 4 1457 2771 235 54 40 chr1 114315507 114315787 -82879645 + RLTR40 LTR ERVK 1 289 -528 4 1457 627 67 0 0 chr1 114315787 114315876 -82879556 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 1457 2771 235 54 40 chr1 114315876 114316392 -82879040 + RLTR40 LTR ERVK 290 807 -10 4 1457 216 0 0 0 chr1 114317657 114317681 -82877751 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1457 371 289 40 35 chr1 114318093 114318152 -82877280 + Lx8 LINE L1 6110 6168 -1305 4 1457 423 0 0 0 chr1 114318152 114318199 -82877233 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1457 371 289 40 35 chr1 114318199 114318340 -82877092 + Lx8 LINE L1 6169 6310 -1163 4 1457 525 202 68 23 chr1 114318711 114318843 -82876589 + B1_Mur4 SINE Alu 1 138 -12 4 1457 209 183 17 0 chr1 114318862 114318922 -82876510 + GA-rich Low_complexity Low_complexity 1 61 0 4 1457 332 308 83 14 chr1 114318927 114319072 -82876360 + HAL1-3A_ME LINE L1 2284 2438 -420 4 1457 540 111 0 0 chr1 114319072 114319153 -82876279 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 4 1457 646 278 104 42 chr1 114319202 114319461 -82875971 + B4A SINE B4 2 276 -16 4 1457 449 289 40 7 chr1 114319489 114319639 -82875793 - MIR SINE MIR -56 206 52 4 1457 238 246 0 109 chr1 114319643 114319707 -82875725 - ORR1E LTR MaLR -300 59 3 4 1457 243 194 0 0 chr1 114319778 114319814 -82875618 + URR1B DNA MER1_type 1 36 -189 4 1457 1945 76 0 0 chr1 114319998 114320249 -82875183 + MTA_Mm LTR MaLR 146 396 0 4 1457 877 274 104 12 chr1 114320668 114320919 -82874513 + MTEb LTR MaLR 3 276 -103 4 1457 2227 201 2 2 chr1 114320928 114321337 -82874095 + RMER15 LTR ERVL 6 414 -161 4 1457 567 331 100 28 chr1 114321352 114321601 -82873831 - MER45B DNA Tip100 -694 346 80 4 1457 1695 156 25 13 chr1 114322088 114322406 -82873026 + RLTR11A2 LTR ERVK 206 527 0 4 1457 183 184 0 0 chr1 114322503 114322541 -82872891 + CT-rich Low_complexity Low_complexity 4 41 0 4 1457 200 34 0 33 chr1 114323012 114323042 -82872390 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1457 376 217 14 42 chr1 114325691 114325763 -82869669 - RSINE1 SINE B4 -91 74 5 4 1457 466 243 46 29 chr1 114325817 114325991 -82869441 - RLTR15 LTR ERVK -18 341 165 4 1457 378 263 31 95 chr1 114326084 114326396 -82869036 - RLTR15 LTR ERVK -132 227 33 4 1457 378 0 0 0 chr1 114326656 114326698 -82868734 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1457 419 309 91 0 chr1 114326700 114326810 -82868622 - B1_Mur1 SINE Alu -13 136 17 4 1457 201 39 0 0 chr1 114326810 114326836 -82868596 + (CCAA)n Simple_repeat Simple_repeat 3 28 0 4 1457 414 85 0 0 chr1 114326907 114326966 -82868466 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1457 21 57 0 0 chr1 114327049 114327084 -82868348 + AT_rich Low_complexity Low_complexity 1 35 0 4 1457 380 343 27 74 chr1 114327318 114327466 -82867966 + B3A SINE B2 2 142 -56 4 1457 414 53 0 0 chr1 114327470 114327527 -82867905 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1457 399 284 151 5 chr1 114327883 114328102 -82867330 + L1MC4 LINE L1 7252 7502 -380 4 1457 794 285 65 38 chr1 114328310 114328573 -82866859 - MER88 LTR ERVL -193 271 2 4 1457 591 51 0 0 chr1 114328748 114328827 -82866605 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1457 1192 114 23 0 chr1 114328965 114329141 -82866291 + B2_Mm2 SINE B2 2 181 -14 4 1457 365 227 56 21 chr1 114329154 114329298 -82866134 + B2_Mm2 SINE B2 47 195 0 4 1457 22 0 0 0 chr1 114329525 114329547 -82865885 + AT_rich Low_complexity Low_complexity 1 22 0 4 1457 1681 240 127 19 chr1 114329972 114330319 -82865113 + RMER15 LTR ERVL 1 393 -182 4 1457 186 43 0 0 chr1 114330319 114330342 -82865090 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1457 1681 240 127 19 chr1 114330342 114330512 -82864920 + RMER15 LTR ERVL 394 574 -1 4 1457 190 29 28 56 chr1 114330805 114330841 -82864591 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1457 364 315 45 15 chr1 114331328 114331460 -82863972 + Lx7 LINE L1 6371 6506 -1190 4 1457 267 227 127 0 chr1 114331505 114331615 -82863817 - Lx9 LINE L1 -6 7638 7515 4 1457 272 203 14 0 chr1 114331650 114331719 -82863713 - L1MC4a LINE L1 -1207 6675 6606 4 1457 253 173 247 37 chr1 114331703 114331865 -82863567 - Lx9 LINE L1 -135 7509 7314 4 1457 331 79 31 16 chr1 114331868 114331932 -82863500 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 4 1457 915 158 14 0 chr1 114331932 114332078 -82863354 - B1_Mus1 SINE Alu 0 148 1 4 1457 2361 253 122 5 chr1 114332083 114332824 -82862608 - Lx9 LINE L1 -321 7323 6492 4 1457 2897 110 7 33 chr1 114332824 114333277 -82862155 - BGLII_B LTR ERVK 0 441 1 4 1457 2361 253 122 5 chr1 114333277 114333314 -82862118 - Lx9 LINE L1 -1153 6491 6454 4 1457 764 218 152 16 chr1 114333389 114333697 -82861735 + RLTR11A2 LTR ERVK 1 350 -177 4 1457 323 341 56 0 chr1 114333804 114333930 -82861502 - BGLII_B LTR ERVK -10 431 299 4 1457 3737 189 89 74 chr1 114333944 114334821 -82860611 + RMER19B LTR ERVK 1 890 -12 4 1457 514 280 45 60 chr1 114334829 114335095 -82860337 - BGLII_B LTR ERVK -179 262 1 4 1457 202 247 149 23 chr1 114335480 114335567 -82859865 - L4 LINE RTE -286 1743 1646 4 1457 1976 185 8 18 chr1 114335821 114336174 -82859258 + RLTR28 LTR ERVL 5 353 -171 4 1457 3596 101 26 6 chr1 114336174 114336712 -82858720 - RLTR13D1 LTR ERVK 0 806 258 4 1457 3305 39 3 0 chr1 114336712 114337096 -82858336 - IAPEY_LTR LTR ERVK 0 385 1 4 1457 20759 45 4 4 chr1 114337096 114339806 -82855626 - IAPEy-int LTR ERVK 0 7513 4804 4 1457 6772 106 7 10 chr1 114339806 114340868 -82854564 - IAPEy-int LTR ERVK -6455 1058 1 4 1457 3274 44 3 0 chr1 114340868 114341252 -82854180 - IAPEY_LTR LTR ERVK 0 385 1 4 1457 3192 133 33 6 chr1 114341252 114341792 -82853640 - RLTR13D1 LTR ERVK -359 543 1 4 1457 1637 224 95 40 chr1 114342025 114342448 -82852984 - RLTR41 LTR ERV1 0 446 1 4 1457 650 240 0 0 chr1 114343064 114343193 -82852239 + B1_Mus2 SINE Alu 3 131 -16 4 1457 288 0 0 0 chr1 114343374 114343406 -82852026 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1457 702 313 4 4 chr1 114343426 114343657 -82851775 + L1_Mur3 LINE L1 56 286 -7442 4 1457 1067 211 20 24 chr1 114343657 114343925 -82851507 - BGLII_B LTR ERVK 0 441 125 4 1457 474 18 0 0 chr1 114343927 114343982 -82851450 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1457 306 0 0 0 chr1 114343982 114344015 -82851417 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1457 5648 135 55 11 chr1 114344025 114345126 -82850306 - MYSERV16_I-int LTR ERVK -143 2183 1034 4 1457 262 255 143 29 chr1 114345127 114345232 -82850200 - RMER4A LTR ERVK -42 424 308 4 1457 311 190 13 0 chr1 114345240 114345319 -82850113 - MYSERV16_I-int LTR ERVK -1423 903 824 4 1457 1130 229 30 46 chr1 114345328 114345630 -82849802 + RLTR11A LTR ERVK 14 310 -218 4 1457 1146 182 0 39 chr1 114345610 114345839 -82849593 - RMER4B LTR ERVK -365 220 1 4 1457 2223 183 76 2 chr1 114345839 114346360 -82849072 + L1_Mur3 LINE L1 2572 3124 -2756 4 1457 201 39 0 0 chr1 114346360 114346386 -82849046 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 4 1457 2223 183 76 2 chr1 114346386 114346418 -82849014 + L1_Mur3 LINE L1 3125 3165 -2715 4 1457 207 0 0 0 chr1 114346498 114346521 -82848911 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1457 1365 89 0 0 chr1 114346856 114347046 -82848386 - RMER19A LTR ERVK -12 725 536 4 1457 342 0 0 0 chr1 114347433 114347471 -82847961 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1457 311 290 164 64 chr1 114347704 114347844 -82847588 - RSINE1 SINE B4 -5 160 7 4 1457 1111 77 0 7 chr1 114347986 114348129 -82847303 - B1_Mm SINE Alu -4 143 2 4 1457 630 220 82 33 chr1 114349064 114349216 -82846216 + B2_Mm2 SINE B2 2 161 -34 4 1457 3502 101 49 25 chr1 114349216 114349764 -82845668 + LTRIS2 LTR ERV1 4 564 0 4 1457 630 220 82 33 chr1 114349764 114349794 -82845638 + B2_Mm2 SINE B2 162 192 -3 4 1457 230 0 33 0 chr1 114350074 114350104 -82845328 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1457 1199 115 50 0 chr1 114350122 114350304 -82845128 + B2_Mm2 SINE B2 1 191 -4 4 1457 220 366 0 96 chr1 114350305 114350441 -82844991 - ID_B1 SINE B4 -16 208 86 4 1457 375 98 0 0 chr1 114350671 114350732 -82844700 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1457 1207 48 7 0 chr1 114350912 114351058 -82844374 + B1_Mm SINE Alu 1 147 0 5 1457 205 184 0 0 chr1 114351067 114351105 -82844327 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 1457 205 152 0 0 chr1 114351395 114351428 -82844004 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1457 399 289 14 36 chr1 114351541 114351681 -82843751 + B1_Mur2 SINE Alu 1 137 -12 5 1457 24 53 0 0 chr1 114351685 114351723 -82843709 + AT_rich Low_complexity Low_complexity 1 38 0 5 1457 280 339 90 8 chr1 114352441 114352563 -82842869 - LTR78 LTR ERV1 -345 959 828 5 1457 195 42 0 0 chr1 114353445 114353469 -82841963 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1457 450 0 0 0 chr1 114353576 114353626 -82841806 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1457 254 50 25 0 chr1 114354050 114354090 -82841342 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1457 1098 179 5 10 chr1 114354225 114354422 -82841010 - BGLII_B LTR ERVK -245 196 1 5 1457 300 27 0 0 chr1 114354592 114354629 -82840803 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1457 521 30 15 0 chr1 114354629 114354695 -82840737 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1457 362 221 147 0 chr1 114355468 114355512 -82839920 - MT2B LTR ERVL 0 601 544 5 1457 1046 102 17 6 chr1 114355512 114355689 -82839743 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1457 362 221 147 0 chr1 114355689 114355739 -82839693 - MT2B LTR ERVL -58 543 494 5 1457 519 207 36 0 chr1 114356200 114356311 -82839121 + MT2B LTR ERVL 404 518 -83 5 1457 264 308 0 0 chr1 114356425 114356503 -82838929 - L1M4c LINE L1 -6217 167 90 5 1457 180 0 0 0 chr1 114356706 114356726 -82838706 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1457 240 163 0 0 chr1 114356937 114356980 -82838452 + T-rich Low_complexity Low_complexity 1 43 0 5 1457 341 151 12 0 chr1 114357263 114357349 -82838083 + CT-rich Low_complexity Low_complexity 2 88 0 5 1457 216 0 0 0 chr1 114357350 114357374 -82838058 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1457 306 218 161 0 chr1 114357381 114357468 -82837964 - B4 SINE B4 -14 278 178 5 1457 2324 223 89 7 chr1 114358501 114358866 -82836566 + Lx5 LINE L1 6333 6746 -304 5 1457 462 18 0 0 chr1 114358866 114358921 -82836511 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1457 2324 223 89 7 chr1 114358921 114359129 -82836303 + Lx5 LINE L1 6747 6952 -98 5 1457 7439 49 4 1 chr1 114359200 114360376 -82835056 - L1Md_F2 LINE L1 0 6582 5402 5 1457 2390 188 53 16 chr1 114360413 114360977 -82834455 - Lx5 LINE L1 -1042 6008 5441 5 1457 839 37 0 9 chr1 114360977 114361085 -82834347 + (TTCTC)n Simple_repeat Simple_repeat 4 110 0 5 1457 561 30 0 0 chr1 114361087 114361154 -82834278 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1457 2390 212 78 55 chr1 114361154 114361515 -82833917 - Lx5 LINE L1 -437 5440 5047 5 1457 1131 266 112 0 chr1 114361515 114361846 -82833586 - RMER6C LTR ERVK 0 690 323 5 1457 180 0 0 0 chr1 114361865 114361885 -82833547 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1457 7722 120 21 13 chr1 114361885 114363976 -82831456 - Lx3A LINE L1 -12 6969 4865 5 1457 1868 207 21 35 chr1 114363983 114364476 -82830956 - RMER6-int LTR ERVK -37 3140 2674 5 1457 519 213 44 0 chr1 114364642 114364778 -82830654 - RMER6-int LTR ERVK -514 2663 2522 5 1457 2254 234 34 8 chr1 114364779 114365366 -82830066 - RMER6-int LTR ERVK -2543 634 33 5 1457 3950 181 70 11 chr1 114365366 114366284 -82829148 - Lx5 LINE L1 -959 4918 3947 5 1457 274 273 15 15 chr1 114366489 114366556 -82828876 + ID4_ SINE ID 6 72 -11 5 1457 240 35 0 0 chr1 114366595 114366624 -82828808 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1457 263 295 34 11 chr1 114367228 114367317 -82828115 + B4 SINE B4 3 93 -199 5 1457 2251 235 14 35 chr1 114367362 114367874 -82827558 + RLTR11A2 LTR ERVK 27 527 0 5 1457 238 383 17 25 chr1 114367879 114367997 -82827435 + B4A SINE B4 102 218 -74 5 1457 244 138 0 71 chr1 114368283 114368353 -82827079 + A-rich Low_complexity Low_complexity 3 67 0 5 1457 213 350 0 0 chr1 114368504 114368584 -82826848 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1457 415 351 30 0 chr1 114368587 114368718 -82826714 - RSINE1 SINE B4 -2 163 29 5 1457 1238 259 144 20 chr1 114368896 114369001 -82826431 + RLTR11A2 LTR ERVK 1 112 -415 5 1457 198 0 0 0 chr1 114369001 114369023 -82826409 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1457 1238 259 144 20 chr1 114369023 114369362 -82826070 + RLTR11A2 LTR ERVK 113 500 -27 5 1457 549 44 0 0 chr1 114369938 114370006 -82825426 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1457 444 37 0 0 chr1 114370010 114370064 -82825368 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1457 418 314 90 60 chr1 114370109 114370309 -82825123 + B3 SINE B2 5 210 -6 5 1457 444 325 18 74 chr1 114370408 114370571 -82824861 + RSINE1 SINE B4 4 157 -8 5 1457 22 0 0 0 chr1 114370592 114370614 -82824818 + AT_rich Low_complexity Low_complexity 1 22 0 5 1457 301 268 0 14 chr1 114370823 114370895 -82824537 + B4 SINE B4 3 73 -219 5 1457 297 89 0 0 chr1 114371029 114371074 -82824358 + (TCTCTG)n Simple_repeat Simple_repeat 6 50 0 5 1457 399 333 28 11 chr1 114371254 114371433 -82823999 + B3A SINE B2 1 182 -16 5 1457 22 35 0 0 chr1 114372025 114372054 -82823378 + AT_rich Low_complexity Low_complexity 1 29 0 5 1457 5103 123 6 64 chr1 114372432 114372807 -82822625 - L1_Mus4 LINE L1 -6 6630 6307 5 1457 1103 75 0 14 chr1 114372807 114372955 -82822477 - B1_Mus2 SINE Alu 0 147 2 5 1457 5103 123 6 64 chr1 114372955 114373457 -82821975 - L1_Mus4 LINE L1 -330 6306 5804 5 1457 6594 51 2 0 chr1 114373456 114374266 -82821166 + L1Md_F2 LINE L1 5759 6570 -12 5 1457 961 88 0 0 chr1 114374268 114374405 -82821027 - L1_Mus4 LINE L1 -828 5808 5672 5 1457 6703 128 5 35 chr1 114374401 114374798 -82820634 + L1_Mus2 LINE L1 4737 5113 -770 5 1457 665 109 23 8 chr1 114374798 114374927 -82820505 + L1_Mus3 LINE L1 6508 6638 0 5 1457 6703 112 7 19 chr1 114374927 114376408 -82819024 + L1_Mus2 LINE L1 5114 6653 -1 5 1457 369 131 0 0 chr1 114377413 114377474 -82817958 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1457 31 26 0 0 chr1 114377521 114377559 -82817873 + AT_rich Low_complexity Low_complexity 1 38 0 5 1457 285 29 0 0 chr1 114377685 114377719 -82817713 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1457 377 340 39 26 chr1 114377817 114377971 -82817461 + RSINE1 SINE B4 4 159 -6 5 1457 186 143 0 0 chr1 114378075 114378110 -82817322 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1457 370 306 75 14 chr1 114378124 114378336 -82817096 + L1M4 LINE L1 4326 4550 -1596 5 1457 4894 70 0 2 chr1 114378794 114379424 -82816008 - L1_Mus1 LINE L1 -12 6555 5927 5 1457 222 303 212 0 chr1 114380237 114380336 -82815096 + B4A SINE B4 8 127 -165 5 1457 21 71 0 0 chr1 114380692 114380734 -82814698 + AT_rich Low_complexity Low_complexity 1 42 0 5 1457 613 351 12 27 chr1 114380750 114381008 -82814424 + MTEb LTR MaLR 23 276 -103 5 1457 590 172 0 8 chr1 114381064 114381193 -82814239 + (TA)n Simple_repeat Simple_repeat 1 128 0 5 1457 672 312 86 5 chr1 114381444 114381631 -82813801 + B3 SINE B2 8 209 -7 5 1457 24 0 0 0 chr1 114382182 114382206 -82813226 + AT_rich Low_complexity Low_complexity 1 24 0 5 1457 510 225 191 13 chr1 114382751 114382976 -82812456 + RLTR10A LTR ERVK 147 411 0 5 1457 296 77 0 0 chr1 114382978 114383017 -82812415 - tRNA-Phe-TTY tRNA tRNA 0 76 38 5 1457 194 0 39 0 chr1 114383168 114383194 -82812238 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5 1457 202 115 39 0 chr1 114383204 114383256 -82812176 + T-rich Low_complexity Low_complexity 2 55 0 5 1457 3391 209 79 50 chr1 114383258 114384085 -82811347 - RMER13B LTR ERVK -57 851 1 5 1457 326 374 79 12 chr1 114384087 114384252 -82811180 + MTEb LTR MaLR 8 183 -196 5 1457 525 105 0 0 chr1 114385048 114385134 -82810298 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 5 1457 306 0 0 0 chr1 114385134 114385168 -82810264 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1457 739 289 50 5 chr1 114385168 114385366 -82810066 - ID_B1 SINE B4 -11 213 7 5 1457 205 213 0 21 chr1 114385483 114385531 -82809901 + (TATG)n Simple_repeat Simple_repeat 3 49 0 5 1457 448 370 30 70 chr1 114385793 114386095 -82809337 + MT2A LTR ERVL 164 453 -80 5 1457 341 293 43 36 chr1 114386496 114386634 -82808798 - RMER20B LTR ERVK -486 141 3 5 1457 279 0 0 0 chr1 114387527 114387558 -82807874 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1457 201 108 0 0 chr1 114387558 114387594 -82807838 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1457 287 395 19 0 chr1 114387749 114387954 -82807478 + B3 SINE B2 1 209 -7 5 1457 506 374 43 16 chr1 114388137 114388395 -82807037 - B4A SINE B4 -19 273 9 5 1457 470 197 0 8 chr1 114388437 114388555 -82806877 + (TA)n Simple_repeat Simple_repeat 2 118 0 5 1457 1012 325 17 39 chr1 114389558 114389914 -82805518 + ORR1E LTR MaLR 1 348 -11 5 1457 249 300 0 0 chr1 114389967 114390037 -82805395 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1457 1457 195 15 10 chr1 114390039 114390363 -82805069 + RLTR19B LTR ERVK 81 597 -118 5 1457 504 238 0 0 chr1 114390366 114390492 -82804940 + CT-rich Low_complexity Low_complexity 3 128 0 5 1457 566 194 4 11 chr1 114390492 114390606 -82804826 + RLTR19 LTR ERVK 391 506 0 5 1457 994 131 0 0 chr1 114390861 114391006 -82804426 - B1_Mus2 SINE Alu -2 145 1 5 1457 1638 188 13 73 chr1 114391057 114391429 -82804003 + RLTR19-int LTR ERVK 289 638 -5499 5 1457 23 0 0 0 chr1 114391429 114391452 -82803980 + AT_rich Low_complexity Low_complexity 1 23 0 5 1457 3293 99 6 2 chr1 114391461 114391927 -82803505 - L1_Mus3 LINE L1 -10 6628 6161 5 1457 4204 171 63 37 chr1 114391927 114391978 -82803454 + L1_Mur2 LINE L1 2813 2864 -3013 5 1457 204 40 0 0 chr1 114391978 114392003 -82803429 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 5 1457 4204 171 63 37 chr1 114392003 114392151 -82803281 + L1_Mur2 LINE L1 2865 3028 -2849 5 1457 1119 64 0 0 chr1 114392151 114392291 -82803141 + B1_Mus1 SINE Alu 1 140 -8 5 1457 212 0 36 0 chr1 114392291 114392319 -82803113 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1457 4204 171 63 37 chr1 114392319 114393160 -82802272 + L1_Mur2 LINE L1 3029 3880 -1997 5 1457 2628 98 320 10 chr1 114393180 114393673 -82801759 + L1_Mm LINE L1 4466 5111 -772 5 1457 479 232 20 10 chr1 114393683 114393783 -82801649 - ORR1E LTR MaLR -254 105 5 5 1457 23 0 0 0 chr1 114393904 114393927 -82801505 + AT_rich Low_complexity Low_complexity 1 23 0 5 1457 779 218 0 6 chr1 114394040 114394211 -82801221 + L1_Mur2 LINE L1 5060 5229 -648 5 1457 628 189 0 8 chr1 114394240 114394368 -82801064 - Lx5 LINE L1 -446 6604 6478 5 1457 291 286 125 42 chr1 114394391 114394559 -82800873 + Lx4B LINE L1 6873 7054 -4 6 1457 189 74 0 0 chr1 114394728 114394755 -82800677 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 1457 249 254 32 0 chr1 114394923 114394986 -82800446 - MTC LTR MaLR -356 65 1 6 1457 360 43 0 0 chr1 114395199 114395245 -82800187 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1457 461 80 13 0 chr1 114395246 114395321 -82800111 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 6 1457 681 304 98 15 chr1 114395772 114396036 -82799396 + B4 SINE B4 4 289 -3 6 1457 22 0 0 0 chr1 114396673 114396695 -82798737 + AT_rich Low_complexity Low_complexity 1 22 0 6 1457 852 77 0 0 chr1 114397422 114397539 -82797893 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 6 1457 267 340 36 36 chr1 114397552 114397662 -82797770 - RMER1C Other Other -165 1177 1068 6 1457 822 340 24 24 chr1 114397935 114398224 -82797208 - B4 SINE B4 0 292 4 6 1457 255 299 99 90 chr1 114398292 114398726 -82796706 - L1MC3 LINE L1 -95 7690 7253 6 1457 348 331 57 11 chr1 114398916 114398953 -82796479 - B3A SINE B2 -11 187 153 6 1457 581 0 0 14 chr1 114398953 114399023 -82796409 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1457 348 331 57 11 chr1 114399023 114399162 -82796270 - B3A SINE B2 -46 152 4 6 1457 407 377 101 8 chr1 114399460 114399727 -82795705 + B4 SINE B4 1 292 0 6 1457 664 332 39 27 chr1 114399943 114400453 -82794979 + L1MC3 LINE L1 7217 7964 -31 6 1457 215 374 35 41 chr1 114400674 114400819 -82794613 + RSINE1 SINE B4 14 157 -8 6 1457 213 222 0 0 chr1 114400907 114400970 -82794462 + (TAG)n Simple_repeat Simple_repeat 3 65 0 6 1457 3161 106 21 8 chr1 114401065 114401542 -82793890 + L1_Mus3 LINE L1 6156 6638 0 6 1457 558 355 0 0 chr1 114401558 114401710 -82793722 + RSINE1 SINE B4 7 158 -7 6 1457 367 335 69 32 chr1 114401821 114402009 -82793423 + B3 SINE B2 20 214 -2 6 1457 5005 184 34 12 chr1 114402031 114403138 -82792294 + L1_Mur1 LINE L1 3165 4296 -1590 6 1457 849 151 0 0 chr1 114403138 114403290 -82792142 + CT-rich Low_complexity Low_complexity 1 152 0 6 1457 190 167 18 36 chr1 114403301 114403357 -82792075 + C-rich Low_complexity Low_complexity 5 59 0 6 1457 263 315 0 42 chr1 114403389 114403485 -82791947 + CT-rich Low_complexity Low_complexity 6 97 0 6 1457 4631 188 14 24 chr1 114403510 114403968 -82791464 + L1_Mur1 LINE L1 4277 4732 -1154 6 1457 459 0 0 0 chr1 114403968 114404019 -82791413 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1457 4631 188 14 24 chr1 114404019 114404554 -82790878 + L1_Mur1 LINE L1 4733 5259 -627 6 1457 582 321 53 35 chr1 114404556 114404798 -82790634 - MTE2a LTR MaLR -37 342 98 6 1457 232 185 30 30 chr1 114404813 114404880 -82790552 + (TAATG)n Simple_repeat Simple_repeat 4 70 0 6 1457 229 156 177 62 chr1 114404918 114405014 -82790418 - Charlie2b DNA MER1_type -552 2230 2124 6 1457 23 54 0 0 chr1 114405311 114405348 -82790084 + AT_rich Low_complexity Low_complexity 1 37 0 6 1457 248 243 137 177 chr1 114405433 114405608 -82789824 - B3A SINE B2 -16 182 15 6 1457 4055 91 32 3 chr1 114406140 114406725 -82788707 + Lx3_Mus LINE L1 6392 6993 -16 6 1457 227 291 0 0 chr1 114406880 114406935 -82788497 - RSINE1 SINE B4 0 165 111 6 1457 237 386 24 78 chr1 114407004 114407170 -82788262 - ID_B1 SINE B4 -66 158 2 6 1457 329 247 0 43 chr1 114407300 114407393 -82788039 - MTE2b LTR MaLR -13 366 278 6 1457 6795 127 13 5 chr1 114407393 114408621 -82786811 + L1_Mus4 LINE L1 5396 6632 -4 6 1457 3603 47 19 33 chr1 114408680 114409162 -82786270 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1457 305 412 77 7 chr1 114409477 114409751 -82785681 - L1M4 LINE L1 -5650 892 600 6 1457 245 263 0 0 chr1 114409833 114409890 -82785542 - BGLII_B LTR ERVK -18 423 367 6 1457 1108 283 24 39 chr1 114410006 114410293 -82785139 - MTD-int LTR MaLR -720 538 257 6 1457 712 141 56 0 chr1 114410293 114410435 -82784997 - L1_Mus3 LINE L1 -6 6632 6483 6 1457 1108 283 24 39 chr1 114410435 114410485 -82784947 - MTD-int LTR MaLR -1002 256 206 6 1457 357 107 26 13 chr1 114410499 114410575 -82784857 - L1_Mus3 LINE L1 -78 6560 6484 6 1457 617 301 34 86 chr1 114410575 114410844 -82784588 - MTD-int LTR MaLR -1001 257 3 6 1457 1093 255 155 3 chr1 114410849 114411172 -82784260 - MTD LTR MaLR 0 419 48 6 1457 631 197 13 87 chr1 114412935 114413085 -82782347 + B1_Mus2 SINE Alu 9 147 0 6 1457 231 125 0 0 chr1 114413087 114413127 -82782305 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 6 1457 776 285 132 24 chr1 114413201 114413535 -82781897 + ORR1D2 LTR MaLR 1 370 0 6 1457 275 244 121 11 chr1 114413568 114413659 -82781773 + MER110 LTR ERV1 357 457 -34 6 1457 2270 174 82 77 chr1 114413702 114414357 -82781075 - RLTR25B LTR ERVK 0 1028 277 6 1457 2915 181 30 11 chr1 114414357 114414900 -82780532 + RLTR20B2 LTR ERVK 1 553 -7 6 1457 420 303 38 0 chr1 114414855 114414987 -82780445 - RLTR25B LTR ERVK -712 316 180 6 1457 417 129 0 0 chr1 114414987 114415057 -82780375 + Lx LINE L1 6578 6647 -7 6 1457 183 100 0 0 chr1 114415071 114415101 -82780331 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 6 1457 441 0 0 0 chr1 114415983 114416032 -82779400 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1457 378 312 117 106 chr1 114416172 114416455 -82778977 - B4 SINE B4 -1 291 6 6 1457 732 291 172 32 chr1 114416593 114416966 -82778466 + RMER5 LTR ERV1 44 468 -66 6 1457 1559 230 105 72 chr1 114417364 114417918 -82777514 + RMER6C LTR ERVK 118 689 -1 6 1457 1332 99 0 10 chr1 114417922 114418116 -82777316 - MTB LTR MaLR 0 400 209 6 1457 1054 91 0 0 chr1 114418101 114418244 -82777188 + MTB LTR MaLR 258 400 0 6 1457 319 140 40 0 chr1 114418244 114418288 -82777144 + tRNA-Leu-TTA tRNA tRNA 41 86 0 6 1457 3000 133 2 35 chr1 114418293 114418784 -82776648 - MT2C_Mm LTR ERVL 0 475 1 6 1457 4371 140 17 6 chr1 114418954 114420206 -82775226 + L1VL4 LINE L1 255 1511 -2048 6 1457 9515 183 11 5 chr1 114420206 114422068 -82773364 + L1_Mur2 LINE L1 3233 5104 -773 6 1457 8139 135 7 1 chr1 114422072 114423366 -82772066 - L1_Mm LINE L1 -38 5845 4544 6 1457 531 343 38 14 chr1 114423410 114423620 -82771812 + B3 SINE B2 2 216 0 6 1457 2360 106 35 0 chr1 114423890 114424231 -82771201 + L1_Mus2 LINE L1 6211 6563 -3 6 1457 242 277 9 35 chr1 114424612 114424728 -82770704 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 6 1457 301 330 174 9 chr1 114424844 114425062 -82770370 + B4 SINE B4 25 278 -14 6 182 581 262 128 25 chr1 114425854 114426050 -82769382 + B3 SINE B2 1 216 0 6 1458 24 0 0 0 chr1 114426050 114426074 -82769358 + AT_rich Low_complexity Low_complexity 1 24 0 6 1458 429 54 0 0 chr1 114426234 114426290 -82769142 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1458 716 284 130 34 chr1 114426393 114426743 -82768689 + MTE2a LTR MaLR 26 417 -2 6 1458 401 339 101 45 chr1 114426756 114426935 -82768497 - B4A SINE B4 -75 217 29 6 1458 388 337 81 58 chr1 114427246 114427507 -82767925 + B4A SINE B4 1 267 -25 6 1458 384 22 0 0 chr1 114427545 114427590 -82767842 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1458 342 380 37 81 chr1 114428062 114428360 -82767072 + B4 SINE B4 8 292 0 6 1458 27570 34 146 9 chr1 114428418 114432969 -82762463 + L1Md_T LINE L1 416 5585 -298 6 1458 8426 33 1 0 chr1 114432970 114433963 -82761469 + L1Md_T LINE L1 5587 6580 -2 6 1458 299 338 46 33 chr1 114434802 114434955 -82760477 - RMER15 LTR ERVL -15 560 406 6 1458 212 211 13 0 chr1 114435711 114435787 -82759645 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1458 3793 186 4 11 chr1 114436795 114437503 -82757929 - Lx LINE L1 -7 6647 5945 6 1458 6103 169 23 8 chr1 114437504 114438632 -82756800 + Lx2 LINE L1 4643 5787 -96 6 1458 5882 105 8 21 chr1 114438641 114440080 -82755352 - Lx3_Mus LINE L1 -546 6463 5047 6 1458 1364 113 51 18 chr1 114440077 114440294 -82755138 + Lx3_Mus LINE L1 6465 6688 -321 6 1458 244 139 47 0 chr1 114440292 114440335 -82755097 + Lx2 LINE L1 5886 5930 -1067 6 1458 267 258 105 13 chr1 114440821 114440974 -82754458 - L1MC4a LINE L1 -819 7142 6976 6 1458 432 302 150 39 chr1 114441949 114442256 -82753176 - L1MC4a LINE L1 -1968 5914 5574 6 1458 305 24 24 0 chr1 114442389 114442431 -82753001 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1458 1067 64 21 0 chr1 114442431 114442572 -82752860 - B1_Mus1 SINE Alu -3 145 2 6 1458 2404 136 38 8 chr1 114442689 114443237 -82752195 - Lx2 LINE L1 -1028 5969 5405 6 1458 3734 177 69 27 chr1 114443229 114444013 -82751419 + Lx2 LINE L1 5975 6791 -206 6 1458 25 0 0 0 chr1 114444226 114444251 -82751181 + AT_rich Low_complexity Low_complexity 1 25 0 6 1458 585 332 31 22 chr1 114444742 114444967 -82750465 + B4 SINE B4 1 227 -65 6 1458 21 82 0 0 chr1 114445064 114445113 -82750319 + AT_rich Low_complexity Low_complexity 1 49 0 6 1458 6045 119 1 10 chr1 114445113 114446013 -82749419 - Lx3_Mus LINE L1 -2 7007 6116 6 1458 281 172 69 0 chr1 114446028 114446086 -82749346 - RLTR11A LTR ERVK -466 62 1 6 1458 3846 195 53 8 chr1 114446087 114447068 -82748364 - MYSERV16_I-int LTR ERVK -1 2325 1301 6 1458 38901 15 1 7 chr1 114447071 114453690 -82741742 - L1Md_A LINE L1 0 6582 7 6 1458 3286 223 78 34 chr1 114453690 114454951 -82740481 - MYSERV16_I-int LTR ERVK -1009 1317 2 6 1458 23 68 0 0 chr1 114455094 114455138 -82740294 + AT_rich Low_complexity Low_complexity 1 44 0 6 1458 24 32 0 0 chr1 114455415 114455446 -82739986 + AT_rich Low_complexity Low_complexity 1 31 0 6 1458 973 194 64 34 chr1 114456130 114456389 -82739043 + RMER6D LTR ERVK 1 337 -383 6 1458 25 31 0 0 chr1 114457321 114457353 -82738079 + AT_rich Low_complexity Low_complexity 1 32 0 6 1458 1177 275 47 37 chr1 114457372 114457753 -82737679 + MTC LTR MaLR 36 420 -1 6 1458 685 296 25 35 chr1 114457877 114458265 -82737167 - RSINE1 SINE B4 -14 278 1 6 1458 450 366 7 7 chr1 114458469 114458481 -82736951 - RSINE1 SINE B4 -6 159 148 6 1458 201 94 0 0 chr1 114458481 114458513 -82736919 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1458 450 366 7 7 chr1 114458513 114458643 -82736789 - RSINE1 SINE B4 -18 147 17 6 1458 357 320 39 5 chr1 114458736 114458940 -82736492 + L1MA4 LINE L1 5708 5918 -382 6 1458 2384 113 0 3 chr1 114459857 114460228 -82735204 - MusHAL1 LINE L1 -1452 1260 891 6 1458 269 349 35 29 chr1 114460269 114460443 -82734989 + Lx6 LINE L1 7260 7434 -26 6 1458 2719 114 42 40 chr1 114460766 114461240 -82734192 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1458 8295 37 9 0 chr1 114461240 114462267 -82733165 - IAPEz-int LTR ERVK 0 6481 5446 6 1458 1626 0 0 40 chr1 114462266 114462358 -82733074 - IAPEz-int LTR ERVK -2764 3717 3631 6 1458 3486 15 5 0 chr1 114462358 114462752 -82732680 + MTA_Mm LTR MaLR 1 396 0 6 1458 9105 35 4 1 chr1 114462752 114463847 -82731585 + MTA_Mm-int LTR MaLR 1 1098 0 6 1458 3486 15 5 0 chr1 114463847 114464241 -82731191 + MTA_Mm LTR MaLR 1 396 0 6 1458 1626 0 0 40 chr1 114464241 114464347 -82731085 - IAPEz-int LTR ERVK -2851 3630 3527 6 1458 858 89 24 0 chr1 114464347 114464470 -82730962 - IAPEz-int LTR ERVK -2770 4910 4785 7 1458 1718 119 4 4 chr1 114464467 114464729 -82730703 - IAPEz-int LTR ERVK -5183 2497 2236 7 1458 424 38 0 0 chr1 114464728 114464781 -82730651 - IAPEz-int LTR ERVK -5070 1411 1359 7 1458 3240 69 7 29 chr1 114464781 114465520 -82729912 - IAPEz-int LTR ERVK -5819 662 17 7 1458 379 104 60 0 chr1 114465504 114465571 -82729861 - IAPEz-int LTR ERVK -1914 73 3 7 1458 2732 112 42 40 chr1 114465573 114466047 -82729385 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1458 269 284 37 0 chr1 114468518 114468599 -82726833 + B4 SINE B4 92 175 -117 7 1458 505 354 84 30 chr1 114468621 114469095 -82726337 + L1M5 LINE L1 3565 4064 -2082 7 1458 298 310 0 33 chr1 114470053 114470143 -82725289 + B4 SINE B4 188 274 -18 7 1458 671 283 187 19 chr1 114470749 114471012 -82724420 - MTE2a LTR MaLR -8 371 65 7 1458 669 197 0 0 chr1 114471804 114471926 -82723506 - Lx4B LINE L1 -246 6812 6691 7 1458 336 414 23 11 chr1 114471973 114472149 -82723283 + B4A SINE B4 1 178 -114 7 1458 603 0 0 0 chr1 114472187 114472254 -82723178 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1458 244 409 40 35 chr1 114472329 114472529 -82722903 + MLT2B1 LTR ERVL 189 389 -131 7 1458 1348 77 11 0 chr1 114472657 114472839 -82722593 - B2_Mm1t SINE B2 -8 185 2 7 1458 25 0 0 0 chr1 114472938 114472963 -82722469 + AT_rich Low_complexity Low_complexity 1 25 0 7 1458 4377 177 49 25 chr1 114473385 114474184 -82721248 + L1VL2 LINE L1 68 888 -5447 7 1458 387 0 0 0 chr1 114474184 114474227 -82721205 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1458 4377 129 6 1 chr1 114474227 114474894 -82720538 + L1VL2 LINE L1 889 1558 -2057 7 1458 3679 18 0 0 chr1 114474926 114475363 -82720069 - L1_Mm LINE L1 0 5883 5447 7 1458 20431 19 1 0 chr1 114475385 114478581 -82716851 - L1Md_A LINE L1 0 6582 3386 7 1458 5958 41 0 0 chr1 114478581 114479293 -82716139 + L1Md_T LINE L1 5871 6582 0 7 1458 366 42 0 0 chr1 114479575 114479623 -82715809 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1458 1456 209 32 13 chr1 114479719 114480030 -82715402 - Lx LINE L1 0 7050 6734 7 1458 25 0 0 0 chr1 114480030 114480055 -82715377 + AT_rich Low_complexity Low_complexity 1 25 0 7 1458 15968 206 29 11 chr1 114480071 114483927 -82711505 + Lx LINE L1 1864 5789 -94 7 1458 1574 156 0 14 chr1 114483923 114484203 -82711229 + Lx LINE L1 5998 6273 -381 7 1458 10969 128 44 8 chr1 114484196 114486646 -82708786 - L1Md_F LINE L1 -2671 3212 675 7 1458 1846 211 0 3 chr1 114486659 114487049 -82708383 - Lx LINE L1 -154 6500 6112 7 1458 851 65 8 0 chr1 114487049 114487172 -82708260 + MusHAL1 LINE L1 624 747 -1965 7 1458 5080 113 29 5 chr1 114487161 114488034 -82707398 + MusHAL1 LINE L1 1538 2431 -281 7 1458 774 41 0 0 chr1 114488168 114488266 -82707166 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 1458 192 40 0 0 chr1 114488266 114488290 -82707142 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1458 359 386 0 0 chr1 114488561 114488714 -82706718 + Lx8 LINE L1 7056 7208 -265 7 1458 1517 135 288 54 chr1 114488922 114489314 -82706118 - RLTR6_Mm LTR ERV1 -134 520 37 7 1458 61447 36 12 1 chr1 114489427 114497116 -82698316 - RLTR6-int LTR ERV1 0 7778 1 7 1458 1867 141 259 47 chr1 114497117 114497585 -82697847 - RLTR6_Mm LTR ERV1 -51 603 37 7 1458 4067 105 0 2 chr1 114497818 114498390 -82697042 - L1_Mus1 LINE L1 -4 6563 5993 7 1458 180 0 0 0 chr1 114498428 114498448 -82696984 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 7 1458 456 322 54 45 chr1 114498451 114498675 -82696757 + Lx8 LINE L1 6992 7217 -256 7 1458 387 92 0 0 chr1 114498779 114498844 -82696588 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1458 375 23 0 0 chr1 114498844 114498888 -82696544 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1458 700 315 25 5 chr1 114499416 114499614 -82695818 - MTE2b LTR MaLR -145 234 33 7 1458 306 313 12 0 chr1 114499810 114499893 -82695539 + PB1D10 SINE Alu 25 108 -9 7 1458 2775 52 0 6 chr1 114500635 114500984 -82694448 + L1Md_F2 LINE L1 6235 6581 -1 1 1458 7541 156 24 11 chr1 114502187 114503769 -82691663 - Lx2 LINE L1 -3 6994 5390 2 1458 420 111 0 0 chr1 114503957 114504020 -82691412 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1458 269 316 178 19 chr1 114505435 114505620 -82689812 + B4A SINE B4 54 253 -39 4 1458 1700 160 36 60 chr1 114505638 114505970 -82689462 - ORR1A2 LTR MaLR -3 324 1 5 1458 351 0 0 0 chr1 114505995 114506034 -82689398 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1458 360 0 0 0 chr1 114506181 114506221 -82689211 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1458 6905 56 2 7 chr1 114506221 114507105 -82688327 + L1Md_F2 LINE L1 5691 6570 -12 8 1458 492 352 69 23 chr1 114507674 114507936 -82687496 - B4A SINE B4 -18 274 1 9 1458 1602 257 36 119 chr1 114508208 114508871 -82686561 - RMER19C LTR ERVK 0 611 4 1 1458 189 74 0 0 chr1 114508889 114508916 -82686516 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1458 254 223 8 16 chr1 114509162 114509293 -82686139 + CT-rich Low_complexity Low_complexity 1 129 0 1 1458 470 209 28 136 chr1 114509400 114509577 -82685855 - RMER6D LTR ERVK -278 442 285 1 1458 2176 198 47 20 chr1 114509564 114510059 -82685373 + RLTR31_Mm LTR ERVK 54 561 0 1 1458 586 361 38 45 chr1 114510018 114510305 -82685127 + B4 SINE B4 4 288 -4 1 1458 461 332 119 21 chr1 114511267 114511510 -82683922 - B4A SINE B4 -23 269 3 1 1458 21 0 0 0 chr1 114511517 114511538 -82683894 + AT_rich Low_complexity Low_complexity 1 21 0 1 1458 204 40 0 0 chr1 114511870 114511895 -82683537 + (CTAAA)n Simple_repeat Simple_repeat 5 29 0 1 1458 626 305 46 32 chr1 114512408 114512625 -82682807 + B4A SINE B4 1 220 -72 1 1458 507 33 0 0 chr1 114512703 114512764 -82682668 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1458 420 156 0 0 chr1 114512969 114513059 -82682373 + T-rich Low_complexity Low_complexity 1 90 0 2 1458 977 120 0 0 chr1 114513059 114513201 -82682231 - B1_Mus1 SINE Alu 0 148 7 2 1458 386 325 147 0 chr1 114513725 114513916 -82681516 + ID_B1 SINE B4 2 220 -4 2 1458 246 32 0 0 chr1 114513920 114513951 -82681481 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1458 244 325 43 0 chr1 114514188 114514274 -82681158 + B1F2 SINE Alu 24 113 -7 2 1458 189 0 0 0 chr1 114514278 114514299 -82681133 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2 1458 3239 56 2 2 chr1 114514499 114514895 -82680537 + MTA_Mm LTR MaLR 1 396 0 2 1458 6936 83 20 108 chr1 114514895 114515152 -82680280 + MTA_Mm-int LTR MaLR 1 259 -839 2 1458 2739 54 62 0 chr1 114515152 114515488 -82679944 + IAPEY2_LTR LTR ERVK 1 357 0 2 1458 6936 83 20 108 chr1 114515488 114516434 -82678998 + MTA_Mm-int LTR MaLR 260 1098 0 2 1458 3547 18 0 0 chr1 114516434 114516830 -82678602 + MTA_Mm LTR MaLR 1 396 0 2 1458 297 285 43 74 chr1 114516881 114517044 -82678388 - RNLTR23 LTR ERVK -6 636 479 2 1458 7498 111 22 8 chr1 114517237 114518458 -82676974 - Lx3_Mus LINE L1 -146 6863 5626 3 1458 878 92 0 0 chr1 114518454 114518585 -82676847 + L1_Mur1 LINE L1 1363 1493 -4393 3 1458 21 36 0 0 chr1 114518601 114518629 -82676803 + AT_rich Low_complexity Low_complexity 1 28 0 3 1458 244 289 44 0 chr1 114518746 114518836 -82676596 - L1MDb LINE L1 -4755 1878 1785 3 1458 400 344 27 16 chr1 114518854 114519040 -82676392 - L1MDb LINE L1 -5335 1205 1018 3 1458 22 94 0 0 chr1 114519076 114519140 -82676292 + AT_rich Low_complexity Low_complexity 1 64 0 3 1458 1956 224 98 66 chr1 114519509 114520102 -82675330 - RLTR18 LTR ERVK -2 614 3 3 1458 487 340 143 8 chr1 114520572 114520824 -82674608 + B4A SINE B4 3 288 -4 3 1458 472 340 0 7 chr1 114521418 114521563 -82673869 + MLT1A0 LTR MaLR 14 157 -208 3 1458 503 352 67 22 chr1 114521563 114521830 -82673602 + B4 SINE B4 1 279 -13 3 1458 2688 36 6 175 chr1 114521833 114522302 -82673130 + RLTR10 LTR ERVK 1 390 0 3 1458 2075 31 4 0 chr1 114522312 114522572 -82672860 + RLTR10-int LTR ERVK 41 301 -1686 3 1458 26 50 0 0 chr1 114523158 114523198 -82672234 + AT_rich Low_complexity Low_complexity 1 40 0 4 1458 1056 320 35 16 chr1 114523381 114523753 -82671679 - MTE2b LTR MaLR 0 379 1 4 1458 410 378 38 5 chr1 114524452 114524638 -82670794 + MT2A LTR ERVL 13 204 -329 4 1458 233 184 0 0 chr1 114524921 114524970 -82670462 - L1MC4a LINE L1 -815 7067 7019 4 1458 246 128 0 0 chr1 114525347 114525386 -82670046 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1458 3346 78 21 19 chr1 114525386 114525855 -82669577 + L1Md_F2 LINE L1 6101 6570 -12 4 1458 398 361 35 61 chr1 114525876 114526106 -82669326 + MT2A LTR ERVL 189 412 -121 4 1458 547 229 0 0 chr1 114526128 114526237 -82669195 - URR1B DNA MER1_type -2 223 115 4 1458 1156 55 7 0 chr1 114526237 114526382 -82669050 + B1_Mm SINE Alu 2 147 0 4 1458 228 111 0 45 chr1 114526382 114526448 -82668984 + A-rich Low_complexity Low_complexity 3 65 0 4 1458 454 305 51 0 chr1 114526450 114526568 -82668864 - URR1B DNA MER1_type -101 124 1 4 1458 249 208 0 61 chr1 114526610 114526692 -82668740 + T-rich Low_complexity Low_complexity 1 77 0 4 1458 1025 270 256 16 chr1 114527706 114528147 -82667285 + RMER15 LTR ERVL 27 573 -2 5 1458 566 149 27 0 chr1 114528293 114528441 -82666991 + GA-rich Low_complexity Low_complexity 1 152 0 5 1458 1029 82 0 7 chr1 114528724 114528859 -82666573 + B1_Mus2 SINE Alu 2 135 -12 5 1458 225 0 0 0 chr1 114528859 114528884 -82666548 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1458 984 69 0 8 chr1 114528884 114529015 -82666417 + B1_Mus2 SINE Alu 6 135 -12 5 1458 313 32 79 0 chr1 114529016 114529079 -82666353 + (CAA)n Simple_repeat Simple_repeat 2 69 0 5 1458 778 70 0 9 chr1 114529210 114529326 -82666106 + L1_Mus2 LINE L1 6452 6566 0 5 1458 477 324 0 81 chr1 114529639 114529800 -82665632 + B3A SINE B2 40 187 -11 5 1458 1101 289 50 50 chr1 114529986 114530261 -82665171 + MTE2b LTR MaLR 19 295 -84 5 1458 390 42 0 0 chr1 114530261 114530309 -82665123 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 5 1458 1101 289 50 50 chr1 114530309 114530393 -82665039 + MTE2b LTR MaLR 296 378 -1 5 1458 496 211 20 17 chr1 114530710 114531017 -82664415 + GA-rich Low_complexity Low_complexity 1 308 0 6 1458 1161 236 106 22 chr1 114532154 114532466 -82662966 - ORR1C1 LTR MaLR -40 338 1 6 1458 458 216 0 0 chr1 114532672 114532760 -82662672 - RLTR26 LTR ERVK 0 642 555 6 1458 358 297 34 62 chr1 114533072 114533248 -82662184 - RLTR43A LTR ERVK 0 364 194 6 1458 189 94 0 0 chr1 114533571 114533603 -82661829 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1458 776 369 4 7 chr1 114533797 114534078 -82661354 - B4A SINE B4 0 292 13 6 1458 2261 168 30 30 chr1 114534101 114534531 -82660901 - RLTR23 LTR ERV1 0 430 1 6 1458 2987 213 21 56 chr1 114535007 114535672 -82659760 - RLTR26 LTR ERVK 0 642 1 6 1458 672 317 10 24 chr1 114535727 114535934 -82659498 + B3 SINE B2 1 204 -12 6 1458 21 36 0 0 chr1 114535950 114535978 -82659454 + AT_rich Low_complexity Low_complexity 1 28 0 6 1458 224 275 0 0 chr1 114536415 114536495 -82658937 + T-rich Low_complexity Low_complexity 1 80 0 7 1458 621 259 64 49 chr1 114536498 114536850 -82658582 - MT2A LTR ERVL -13 588 95 7 1458 535 316 50 87 chr1 114536972 114537353 -82658079 - RLTR11B LTR ERVK -82 371 5 7 1458 236 241 59 24 chr1 114537391 114537476 -82657956 - MT2A LTR ERVL -513 88 1 7 1458 425 306 98 17 chr1 114537512 114537685 -82657747 + B3A SINE B2 8 194 -4 7 1458 475 381 75 55 chr1 114538582 114538654 -82656778 + B4A SINE B4 32 101 -191 7 1458 1630 177 20 58 chr1 114538654 114538996 -82656436 - ORR1A4 LTR MaLR 0 329 1 7 1458 475 381 75 55 chr1 114538996 114539176 -82656256 + B4A SINE B4 102 289 -3 7 1458 218 313 0 20 chr1 114539217 114539318 -82656114 + A-rich Low_complexity Low_complexity 3 101 0 7 1458 21 0 0 0 chr1 114539500 114539521 -82655911 + AT_rich Low_complexity Low_complexity 1 21 0 7 1458 259 333 30 50 chr1 114539916 114540017 -82655415 + B4A SINE B4 3 101 -191 7 1458 939 233 82 42 chr1 114540032 114540386 -82655046 + RLTR9A LTR ERVK 1 368 0 7 1458 312 151 0 0 chr1 114540492 114540545 -82654887 + ETnERV2-int LTR ERVK 1450 1502 -5904 8 1458 270 73 0 0 chr1 114540789 114540830 -82654602 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 8 1458 489 34 0 0 chr1 114540833 114540892 -82654540 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1458 720 71 0 0 chr1 114541008 114541107 -82654325 + (GA)n Simple_repeat Simple_repeat 2 100 0 8 1458 3839 170 91 65 chr1 114541125 114542292 -82653140 + RMER16-int LTR ERVK 299 2175 -5231 8 1458 6513 168 68 48 chr1 114542509 114544636 -82650796 + RMER16-int LTR ERVK 1673 3602 -1804 8 1458 227 0 91 0 chr1 114544636 114544669 -82650763 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 8 1458 1409 179 40 44 chr1 114544701 114545139 -82650293 + RMER16-int LTR ERVK 3589 3866 -1540 8 1458 785 250 99 85 chr1 114545651 114546014 -82649418 + RLTR9A LTR ERVK 1 368 0 8 1458 473 331 33 0 chr1 114546014 114546165 -82649267 + B4A SINE B4 111 266 -26 8 1458 342 0 0 0 chr1 114546174 114546212 -82649220 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1458 1619 188 30 180 chr1 114546564 114547070 -82648362 - RLTR23 LTR ERV1 0 430 1 8 1458 315 0 0 0 chr1 114547882 114547917 -82647515 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1458 424 258 24 66 chr1 114548545 114548711 -82646721 + RLTR9A LTR ERVK 210 368 0 9 1458 4326 147 28 35 chr1 114548756 114549670 -82645762 + L1Md_T LINE L1 298 1205 -5411 9 1458 34372 36 0 0 chr1 114549676 114554093 -82641339 + L1Md_T LINE L1 1170 5586 -297 9 1458 7935 57 2 0 chr1 114554093 114555087 -82640345 + L1Md_T LINE L1 5587 6582 0 9 1458 217 118 39 0 chr1 114556843 114556894 -82638538 + CT-rich Low_complexity Low_complexity 3 55 0 9 182 725 104 7 0 chr1 114556906 114557041 -82638391 + (CCAA)n Simple_repeat Simple_repeat 2 137 0 9 1459 263 258 0 15 chr1 114557840 114557907 -82637525 + RMER5 LTR ERV1 408 473 -61 9 1459 27 73 0 0 chr1 114558161 114558216 -82637216 + AT_rich Low_complexity Low_complexity 1 55 0 9 1459 303 233 150 46 chr1 114558333 114558486 -82636946 + RMER5 LTR ERV1 218 386 -148 9 1459 288 0 0 0 chr1 114558545 114558577 -82636855 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1459 751 218 22 27 chr1 114558677 114558861 -82636571 - ORR1C2-int LTR MaLR -116 1393 1211 9 1459 26 0 0 0 chr1 114558918 114558944 -82636488 + AT_rich Low_complexity Low_complexity 1 26 0 1 1459 306 50 0 0 chr1 114559325 114559365 -82636067 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1459 1915 288 70 31 chr1 114560364 114561064 -82634368 - ORR1C2-int LTR MaLR -282 1088 362 9 1459 6037 115 53 3 chr1 114561065 114561884 -82633548 + Lx LINE L1 5671 6518 -136 1 1459 186 43 0 0 chr1 114561884 114561907 -82633525 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 1 1459 6037 115 53 3 chr1 114561907 114562018 -82633414 + Lx LINE L1 6519 6645 -9 1 1459 217 93 47 0 chr1 114562041 114562084 -82633348 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 1 1459 1335 276 29 3 chr1 114562087 114562432 -82633000 - ORR1C2-int LTR MaLR -1016 354 1 9 1459 1051 247 106 28 chr1 114562434 114562778 -82632654 - ORR1C2 LTR MaLR 0 384 1 9 1459 287 379 82 20 chr1 114563944 114564189 -82631243 - RMER15 LTR ERVL -12 563 304 1 1459 685 378 42 11 chr1 114564686 114564744 -82630688 + MTEa LTR MaLR 1 58 -321 1 1459 2852 94 2 5 chr1 114564744 114565141 -82630291 - MTA_Mm LTR MaLR 0 396 1 1 1459 685 378 42 11 chr1 114565141 114565443 -82629989 + MTEa LTR MaLR 59 371 -8 1 1459 563 372 57 28 chr1 114565466 114565820 -82629612 - MLT1A0 LTR MaLR 0 365 2 1 1459 929 149 37 6 chr1 114565944 114566106 -82629326 + L1VL1 LINE L1 23 189 -6233 1 1459 15447 80 2 5 chr1 114566102 114568259 -82627173 + L1Md_F2 LINE L1 1657 3807 -2076 1 1459 7175 83 0 0 chr1 114568256 114569221 -82626211 + L1Md_F2 LINE L1 4621 5585 -298 1 1459 6440 117 16 7 chr1 114569222 114570206 -82625226 + L1Md_F2 LINE L1 5587 6579 -3 1 1459 1468 220 15 12 chr1 114570207 114570534 -82624898 + ORR1B1 LTR MaLR 47 374 -20 1 1459 850 142 12 47 chr1 114570559 114570729 -82624703 - Lx2A LINE L1 -726 6282 6119 1 1459 2621 162 20 6 chr1 114570733 114571223 -82624209 + L1_Mur1 LINE L1 4170 4666 -1220 1 1459 1065 47 7 33 chr1 114572272 114572425 -82623007 - L1Md_F3 LINE L1 -15 6569 6421 1 1459 1981 134 41 15 chr1 114573217 114573558 -82621874 + L1_Mus4 LINE L1 6283 6632 -4 1 1459 183 382 0 0 chr1 114573814 114573882 -82621550 + L2a LINE L2 3359 3426 0 1 1459 979 296 92 28 chr1 114574007 114574400 -82621032 + MTD LTR MaLR 2 419 0 1 1459 289 345 106 12 chr1 114574578 114574748 -82620684 - RMER15 LTR ERVL -18 557 372 1 1459 381 367 28 6 chr1 114574886 114575067 -82620365 - Lx8 LINE L1 -255 7218 7034 1 1459 278 329 0 0 chr1 114575140 114575213 -82620219 - RSINE1 SINE B4 -56 109 37 1 1459 470 265 26 36 chr1 114575283 114575475 -82619957 - L1M2 LINE L1 -2357 3786 3597 1 1459 410 200 10 0 chr1 114575476 114575527 -82619905 + polypyrimidine Low_complexity Low_complexity 53 103 0 1 1459 1319 67 6 0 chr1 114575527 114575706 -82619726 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1459 410 200 10 0 chr1 114575706 114575754 -82619678 + polypyrimidine Low_complexity Low_complexity 4 52 0 1 1459 1212 301 77 0 chr1 114575774 114576139 -82619293 - Lx5 LINE L1 0 7050 6658 1 1459 6723 94 80 1 chr1 114576159 114577216 -82618216 - L1_Mus3 LINE L1 -7 6631 5492 1 1459 3221 123 8 2 chr1 114577209 114577721 -82617711 + L1_Mus3 LINE L1 4976 5490 -393 1 1459 370 36 36 0 chr1 114577723 114577779 -82617653 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 1 1459 16063 216 49 26 chr1 114577783 114579757 -82615675 - Lx5 LINE L1 -395 6655 4626 1 1459 243 0 0 0 chr1 114579757 114579784 -82615648 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1459 16063 218 47 45 chr1 114579784 114582352 -82613080 - Lx5 LINE L1 -1252 4625 2062 1 1459 921 122 0 0 chr1 114582352 114582499 -82612933 + (TGG)n Simple_repeat Simple_repeat 3 149 0 1 1459 16063 215 43 39 chr1 114582499 114583395 -82612037 - Lx5 LINE L1 -3816 2061 1174 1 1459 379 184 46 0 chr1 114583389 114583476 -82611956 - Lx2B LINE L1 0 7000 6910 1 1459 1316 133 13 4 chr1 114583476 114583703 -82611729 + L1_Mus4 LINE L1 6401 6629 -7 1 1459 326 235 49 0 chr1 114583711 114583792 -82611640 - L1_Rod LINE L1 -3046 2801 2717 1 1459 574 260 36 85 chr1 114583821 114584044 -82611388 - L1_Rod LINE L1 -3264 2583 2372 1 1459 2045 99 6 28 chr1 114584046 114584369 -82611063 + IAPLTR2b LTR ERVK 1 316 -11 1 1459 1581 250 79 23 chr1 114584378 114584600 -82610832 - L1_Rod LINE L1 -3467 2380 2167 1 1459 198 0 0 0 chr1 114584600 114584622 -82610810 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1459 1581 250 79 23 chr1 114584622 114584968 -82610464 - L1_Rod LINE L1 -3681 2166 1780 1 1459 413 223 103 46 chr1 114585125 114585299 -82610133 - L1_Rod LINE L1 -6301 1307 1124 1 1459 332 271 188 59 chr1 114585306 114585663 -82609769 - L1_Rod LINE L1 -6615 993 591 1 1459 524 386 8 12 chr1 114585752 114585993 -82609439 + B4 SINE B4 2 241 -51 1 1459 324 70 0 0 chr1 114586014 114586057 -82609375 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1459 1221 315 32 22 chr1 114586389 114586795 -82608637 - MTD LTR MaLR -5 414 5 1 1459 1345 268 88 88 chr1 114586799 114587783 -82607649 - MTD-int LTR MaLR 0 1098 22 1 1459 336 395 24 0 chr1 114588038 114588162 -82607270 + RSINE1 SINE B4 8 134 -31 1 1459 384 284 67 55 chr1 114588295 114588548 -82606884 - L1M4c LINE L1 -4039 2345 2090 1 1459 22 70 0 0 chr1 114588561 114588604 -82606828 + AT_rich Low_complexity Low_complexity 1 43 0 1 1459 306 0 0 0 chr1 114589040 114589074 -82606358 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1459 288 0 0 0 chr1 114589074 114589106 -82606326 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1459 8086 68 1 1 chr1 114590297 114592061 -82603371 - L1Md_F2 LINE L1 -2 6580 4817 1 1459 2115 43 0 0 chr1 114592058 114592311 -82603121 + L1Md_F2 LINE L1 5334 5586 -297 1 1459 7897 51 2 2 chr1 114592311 114593294 -82602138 + L1Md_F2 LINE L1 5587 6569 -13 1 1459 4722 69 0 13 chr1 114593319 114593949 -82601483 + L1_Mm LINE L1 4329 4950 -933 1 1459 22 88 0 0 chr1 114594256 114594313 -82601119 + AT_rich Low_complexity Low_complexity 1 57 0 1 1459 241 320 24 24 chr1 114595305 114595430 -82600002 - L1M5 LINE L1 -510 5669 5545 1 1459 8054 50 2 0 chr1 114595714 114597068 -82598364 - L1Md_F2 LINE L1 -1 6581 5224 1 1459 2518 92 3 3 chr1 114597066 114597415 -82598017 + L1Md_F2 LINE L1 4903 5251 -632 1 1459 1080 101 0 0 chr1 114597651 114597820 -82597612 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 1459 828 241 16 12 chr1 114598246 114598490 -82596942 + Lx3C LINE L1 881 1125 -5961 1 1459 1103 230 35 9 chr1 114598504 114598850 -82596582 + Lx3C LINE L1 1206 1560 -4317 1 1459 1055 159 122 25 chr1 114598849 114599112 -82596320 + Lx LINE L1 6329 6654 0 1 1459 6865 228 36 31 chr1 114599089 114599652 -82595780 + Lx3C LINE L1 1536 2060 -3817 1 1459 456 51 0 0 chr1 114599652 114599711 -82595721 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1459 6865 228 36 31 chr1 114599711 114601150 -82594282 + Lx3C LINE L1 2061 3549 -2328 1 1459 4062 205 32 80 chr1 114601153 114602087 -82593345 + RMER19B LTR ERVK 1 889 -13 1 1459 442 214 34 8 chr1 114602098 114602216 -82593216 + Lx3C LINE L1 3547 3667 -2210 1 1459 3887 183 23 34 chr1 114602219 114603036 -82592396 - L1_Mur2 LINE L1 -623 5254 4447 1 1459 462 18 0 0 chr1 114603036 114603091 -82592341 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1459 987 186 10 127 chr1 114603093 114603532 -82591900 + Lx3C LINE L1 5256 5623 -2259 1 1459 2330 234 70 87 chr1 114603565 114604324 -82591108 - RMER13B LTR ERVK -158 750 5 1 1459 6222 148 19 4 chr1 114604346 114605363 -82590069 + Lx3C LINE L1 5587 6618 -358 1 1459 399 41 0 0 chr1 114605364 114605413 -82590019 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1459 465 331 33 20 chr1 114607161 114607312 -82588120 + RSINE1 SINE B4 13 165 0 1 1459 1216 264 80 0 chr1 114607470 114607819 -82587613 + ORR1C1 LTR MaLR 1 377 -1 1 1459 464 300 7 79 chr1 114607820 114607972 -82587460 + ID_B1 SINE B4 84 224 0 1 1459 246 62 0 0 chr1 114608022 114608054 -82587378 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1459 242 331 31 25 chr1 114608811 114608972 -82586460 - L1MC3 LINE L1 -9 7776 7615 1 1459 363 292 27 38 chr1 114609041 114609226 -82586206 - L1MC3 LINE L1 -1369 6416 6234 1 1459 252 59 0 0 chr1 114609568 114609602 -82585830 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1459 28 0 0 0 chr1 114609802 114609830 -82585602 + AT_rich Low_complexity Low_complexity 1 28 0 1 1459 339 365 88 26 chr1 114609864 114610137 -82585295 + B4A SINE B4 1 290 -2 1 1459 297 51 0 0 chr1 114610359 114610398 -82585034 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 1 1459 350 337 8 12 chr1 114610486 114610679 -82584753 - L1MC3 LINE L1 -380 5862 5669 1 1459 258 160 0 0 chr1 114611384 114611434 -82583998 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1459 1453 243 48 11 chr1 114611614 114611972 -82583460 + MTD LTR MaLR 8 378 -41 1 1459 254 316 28 75 chr1 114611983 114612089 -82583343 + RLTR25A LTR ERVK 1 101 -1002 1 1459 4948 124 44 22 chr1 114612802 114613668 -82581764 + RMER17D LTR ERVK 1 885 -4 1 1459 2574 123 19 14 chr1 114614572 114614991 -82580441 - BGLII LTR ERVK 0 421 1 1 1459 369 355 122 41 chr1 114615309 114615456 -82579976 + B3 SINE B2 1 159 -57 1 1459 27 29 0 0 chr1 114615465 114615499 -82579933 + AT_rich Low_complexity Low_complexity 1 34 0 1 1459 543 335 35 30 chr1 114615573 114615770 -82579662 + ID_B1 SINE B4 11 208 -16 1 1459 285 316 36 54 chr1 114615802 114615969 -82579463 - RLTR43A LTR ERVK 0 364 252 1 1459 24 0 0 0 chr1 114616820 114616844 -82578588 + AT_rich Low_complexity Low_complexity 1 24 0 1 1459 4392 10 0 10 chr1 114617551 114618049 -82577383 - MT2_Mm LTR ERVL 0 493 1 1 1459 4294 88 0 2 chr1 114618778 114619356 -82576076 - L1_Mus1 LINE L1 0 6567 5991 1 1459 433 392 0 45 chr1 114619394 114619573 -82575859 + B4 SINE B4 122 292 0 1 1459 229 246 0 0 chr1 114619585 114619646 -82575786 + GA-rich Low_complexity Low_complexity 2 62 0 1 1459 974 139 0 0 chr1 114620119 114620263 -82575169 + B1_Mus2 SINE Alu 1 144 -3 1 1459 405 0 0 0 chr1 114620263 114620308 -82575124 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 1459 260 234 10 50 chr1 114620967 114621066 -82574366 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 1 1459 764 314 25 50 chr1 114621089 114621367 -82574065 - B4A SINE B4 -6 286 16 1 1459 1167 352 77 22 chr1 114621511 114622243 -82573189 - Lx8 LINE L1 -40 7433 6662 1 1459 1252 266 20 7 chr1 114622243 114622549 -82572883 - ORR1B2 LTR MaLR 0 367 58 1 1459 2757 55 9 0 chr1 114622551 114622894 -82572538 + ORR1A1 LTR MaLR 1 346 0 1 1459 1520 160 13 25 chr1 114622928 114623255 -82572177 - ORR1A2 LTR MaLR -82 312 1 1 1459 207 0 0 0 chr1 114623291 114623314 -82572118 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1459 251 264 181 0 chr1 114623326 114623398 -82572034 - Lx8 LINE L1 -869 6604 6520 1 1459 588 277 58 68 chr1 114623542 114623747 -82571685 + MTC LTR MaLR 217 419 -2 1 1459 1344 95 0 0 chr1 114624775 114624954 -82570478 + B2_Mm1a SINE B2 1 179 -14 1 1459 6728 69 7 8 chr1 114624966 114626124 -82569308 - L1Md_F2 LINE L1 -2 6636 5499 1 1459 7163 72 12 0 chr1 114626122 114627067 -82568365 + L1Md_F2 LINE L1 4551 5506 -377 1 1459 503 69 14 0 chr1 114627758 114627830 -82567602 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1459 500 294 27 0 chr1 114627836 114627982 -82567450 - B1_Mur4 SINE Alu 0 150 1 1 1459 212 77 26 0 chr1 114627984 114628023 -82567409 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1459 982 135 0 7 chr1 114628044 114628193 -82567239 + B1_Mus1 SINE Alu 1 148 0 1 1459 552 68 0 0 chr1 114628204 114628277 -82567155 + (GAAAA)n Simple_repeat Simple_repeat 3 75 0 1 1459 209 200 0 0 chr1 114628443 114628483 -82566949 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 1 1459 294 304 11 0 chr1 114628520 114628612 -82566820 + Lx8 LINE L1 6578 6670 -803 1 1459 274 312 54 0 chr1 114628726 114628838 -82566594 + Lx8 LINE L1 6678 6795 -678 1 1459 799 69 9 0 chr1 114631019 114631135 -82564297 - L1_Mus2 LINE L1 -1 6565 6449 2 1459 621 128 0 0 chr1 114631259 114631361 -82564071 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2 1459 21 0 0 0 chr1 114631635 114631656 -82563776 + AT_rich Low_complexity Low_complexity 1 21 0 2 1459 270 0 0 0 chr1 114633166 114633196 -82562236 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1459 570 35 23 12 chr1 114633198 114633284 -82562148 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1459 510 340 63 28 chr1 114633359 114633646 -82561786 + RMER5 LTR ERV1 75 371 -163 2 1459 370 386 58 7 chr1 114633683 114633957 -82561475 + Lx8 LINE L1 7043 7330 -143 2 1459 309 109 0 0 chr1 114634029 114634075 -82561357 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1459 252 0 0 0 chr1 114634075 114634102 -82561330 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1459 416 320 172 0 chr1 114634198 114634326 -82561106 - RSINE1 SINE B4 -10 155 6 2 1459 25513 91 2 11 chr1 114634390 114636266 -82559166 - L1Md_F LINE L1 -987 4896 3054 2 1459 2171 86 119 11 chr1 114636266 114636618 -82558814 - RLTR10 LTR ERVK 0 390 1 2 1459 25513 104 12 16 chr1 114636618 114639215 -82556217 - L1Md_F LINE L1 -2830 3053 449 2 1459 756 362 4 4 chr1 114639385 114639626 -82555806 + B4 SINE B4 35 275 -17 2 1459 544 181 6 26 chr1 114640803 114640940 -82554492 + Lx3B LINE L1 6527 6656 -344 2 1459 2846 68 8 3 chr1 114640920 114641291 -82554141 - L1Md_F2 LINE L1 -267 6315 5943 2 1459 1243 119 52 0 chr1 114641291 114641485 -82553947 + L1Md_F2 LINE L1 6367 6570 -12 2 1459 1716 183 0 48 chr1 114641486 114641841 -82553591 + Lx3B LINE L1 6633 6970 -3 2 1459 415 355 0 11 chr1 114642168 114642350 -82553082 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1459 338 322 17 0 chr1 114643172 114643287 -82552145 + (CATATA)n Simple_repeat Simple_repeat 6 122 0 2 1459 553 298 9 51 chr1 114644023 114644239 -82551193 + ID_B1 SINE B4 4 210 -14 2 1459 29 0 0 0 chr1 114644690 114644719 -82550713 + AT_rich Low_complexity Low_complexity 1 29 0 2 1459 329 233 38 19 chr1 114644984 114645089 -82550343 - RLTR23 LTR ERV1 0 430 324 2 1459 381 301 76 7 chr1 114645602 114645746 -82549686 + ORR1D2 LTR MaLR 217 370 0 2 1459 212 100 25 0 chr1 114645872 114645912 -82549520 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2 1459 429 302 26 106 chr1 114646064 114646137 -82549295 + B4 SINE B4 1 70 -222 2 1459 438 108 0 0 chr1 114646137 114646202 -82549230 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1459 429 302 26 106 chr1 114646202 114646317 -82549115 + B4 SINE B4 71 174 -118 2 1459 339 252 69 9 chr1 114646377 114646493 -82548939 + Lx5 LINE L1 6928 7050 0 2 1459 348 331 23 46 chr1 114646628 114646758 -82548674 - RMER12 LTR ERVK -472 850 724 2 1459 603 266 73 10 chr1 114647116 114647321 -82548111 - RLTR45 LTR ERVK 0 482 265 2 1459 745 318 79 9 chr1 114647766 114648084 -82547348 + MTEb LTR MaLR 10 377 -2 2 1459 1819 237 13 174 chr1 114648514 114649121 -82546311 - L1_Mur2 LINE L1 -3661 2216 1747 2 1459 786 81 0 0 chr1 114649121 114649245 -82546187 + (TC)n Simple_repeat Simple_repeat 1 124 0 2 1459 1819 237 13 174 chr1 114649245 114649353 -82546079 - L1_Mur2 LINE L1 -4131 1746 1697 2 1459 1066 96 7 0 chr1 114649353 114649499 -82545933 - B1_Mus1 SINE Alu -1 147 1 2 1459 1819 237 13 174 chr1 114649499 114649991 -82545441 - L1_Mur2 LINE L1 -4181 1696 1203 2 1459 511 313 51 51 chr1 114649990 114650206 -82545226 - L1_Mur2 LINE L1 -5991 1095 879 2 1459 22 56 0 0 chr1 114651118 114651154 -82544278 + AT_rich Low_complexity Low_complexity 1 36 0 2 1459 647 229 0 8 chr1 114651706 114651829 -82543603 - B3 SINE B2 -72 144 23 2 1459 3283 38 5 0 chr1 114652992 114653386 -82542046 + MTA_Mm LTR MaLR 1 396 0 2 1459 785 304 98 7 chr1 114654115 114654390 -82541042 - RMER15 LTR ERVL -3 572 273 2 1459 217 333 18 0 chr1 114655645 114655702 -82539730 - MIRb SINE MIR -10 258 201 2 1459 306 315 117 59 chr1 114655952 114656132 -82539300 - B3A SINE B2 -15 201 19 2 1459 386 347 63 26 chr1 114656257 114656526 -82538906 + B4A SINE B4 2 280 -12 2 1459 452 248 83 18 chr1 114656661 114656829 -82538603 + MER53 DNA hAT 15 193 0 2 1459 1854 168 35 0 chr1 114657624 114657940 -82537492 + ORR1A2 LTR MaLR 1 327 0 2 1459 1807 179 269 2 chr1 114657940 114658387 -82537045 + ORR1A2-int LTR MaLR 1 566 -1397 2 1459 608 234 7 105 chr1 114658370 114658495 -82536937 + MT2B LTR ERVL 150 259 -342 2 1459 431 230 0 13 chr1 114658495 114658570 -82536862 + B1_Mus2 SINE Alu 3 76 -71 2 1459 32 0 0 0 chr1 114658798 114658830 -82536602 + AT_rich Low_complexity Low_complexity 1 32 0 2 1459 297 372 28 55 chr1 114658840 114658985 -82536447 - B3 SINE B2 -30 186 46 2 1459 243 0 0 0 chr1 114658988 114659015 -82536417 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1459 501 248 34 0 chr1 114659017 114659134 -82536298 - B1_Mur2 SINE Alu -1 148 28 2 1459 2980 88 19 2 chr1 114659134 114659558 -82535874 + L1_Mus3 LINE L1 6208 6638 0 2 1459 381 310 30 0 chr1 114660283 114660383 -82535049 + PB1D10 SINE Alu 8 110 -7 2 1459 479 214 8 0 chr1 114660384 114660510 -82534922 + CT-rich Low_complexity Low_complexity 3 129 0 2 1459 255 225 27 27 chr1 114660889 114660962 -82534470 + MTEa LTR MaLR 307 379 0 2 1459 1310 362 34 13 chr1 114660961 114661409 -82534023 + MTEa-int LTR MaLR 2 453 -1127 2 1459 1678 57 0 0 chr1 114661409 114661620 -82533812 + L1Md_T LINE L1 6372 6582 0 2 1459 1310 362 34 13 chr1 114661620 114661795 -82533637 + MTEa-int LTR MaLR 454 638 -942 2 1459 1756 236 138 21 chr1 114661880 114662395 -82533037 + RLTR31A_Mm LTR ERVK 10 584 0 2 1459 22 0 0 0 chr1 114662655 114662677 -82532755 + AT_rich Low_complexity Low_complexity 1 22 0 2 1459 770 263 82 49 chr1 114663182 114663426 -82532006 + B4 SINE B4 6 257 -35 2 1459 288 0 0 0 chr1 114663434 114663466 -82531966 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1459 473 264 23 17 chr1 114664079 114664256 -82531176 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1459 1391 240 21 55 chr1 114664469 114664853 -82530579 + L1VL4 LINE L1 195 565 -5737 2 1459 314 98 33 0 chr1 114664853 114664914 -82530518 + L1_Mus3 LINE L1 6569 6631 -7 2 1459 186 71 0 0 chr1 114665082 114665110 -82530322 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 1459 201 74 0 0 chr1 114665129 114665156 -82530276 + (TTTAG)n Simple_repeat Simple_repeat 4 30 0 2 1459 655 336 68 8 chr1 114665424 114665688 -82529744 - B4 SINE B4 -10 282 3 2 1459 1009 310 115 0 chr1 114665835 114666183 -82529249 - MTD LTR MaLR -14 405 18 2 1459 895 289 39 31 chr1 114666484 114666770 -82528662 - RMER15 LTR ERVL -13 562 275 2 1459 258 280 57 57 chr1 114666820 114666926 -82528506 - RMER15 LTR ERVL -469 106 1 2 1459 314 23 0 23 chr1 114668753 114668797 -82526635 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1459 233 314 9 73 chr1 114669178 114669288 -82526144 + MTEb LTR MaLR 5 107 -272 2 1459 417 39 0 0 chr1 114669340 114669391 -82526041 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1459 352 346 21 48 chr1 114669408 114669680 -82525752 + MTEb LTR MaLR 96 365 -14 2 1459 5019 66 7 0 chr1 114669739 114670416 -82525016 + L1_Mus1 LINE L1 5551 6231 -336 2 1459 1824 145 93 34 chr1 114670416 114670802 -82524630 + RLTR9E LTR ERVK 1 409 0 2 1459 683 290 50 33 chr1 114670802 114670895 -82524537 + Lx2B LINE L1 6579 6677 -323 2 1459 4191 182 39 88 chr1 114670896 114671738 -82523694 + MMETn-int LTR ERVK 89 879 -3965 2 1459 4386 70 30 0 chr1 114671738 114672308 -82523124 - LTRIS_Mus LTR ERV1 0 587 1 2 1459 4191 182 39 88 chr1 114672308 114672602 -82522830 + MMETn-int LTR ERVK 880 1169 -3675 2 1459 683 261 5 36 chr1 114672601 114672796 -82522636 + ETnERV2-int LTR ERVK 2428 2616 -4790 2 1459 563 38 0 0 chr1 114672801 114672874 -82522558 - L1Md_F3 LINE L1 -383 6199 6126 2 1459 2693 50 50 3 chr1 114672874 114673232 -82522200 + L1Md_F3 LINE L1 6209 6583 -1 2 1459 916 146 319 11 chr1 114673248 114673520 -82521912 + ETnERV2-int LTR ERVK 2632 2987 -4419 2 1459 3799 186 39 37 chr1 114673536 114675221 -82520211 + ETnERV2-int LTR ERVK 2356 4085 -3321 2 1459 1595 143 31 82 chr1 114675193 114675512 -82519920 + ETnERV2-int LTR ERVK 6127 6429 -977 2 1459 330 111 15 60 chr1 114675608 114675675 -82519757 + RLTR45-int LTR ERVK 6009 6072 -1172 2 1459 1463 170 0 8 chr1 114675688 114675943 -82519489 + ETnERV3-int LTR ERVK 5529 5781 -27 2 1459 1524 164 24 73 chr1 114675950 114676106 -82519326 + RLTR13B1 LTR ERVK 1 136 -757 2 1459 454 59 0 115 chr1 114676106 114676202 -82519230 - L1Md_T LINE L1 -1 6581 6497 2 1459 1524 177 177 55 chr1 114676202 114676520 -82518912 + RLTR13B1 LTR ERVK 137 539 -363 2 1459 442 84 26 66 chr1 114676520 114676596 -82518836 + ETnERV2-int LTR ERVK 7331 7403 -3 2 1459 1855 132 96 34 chr1 114676598 114676983 -82518449 + RLTR9E LTR ERVK 1 409 0 2 1459 2157 87 99 6 chr1 114676983 114677296 -82518136 + L1_Mus1 LINE L1 6226 6567 0 2 1459 1282 257 99 42 chr1 114677613 114678117 -82517315 + MT2A LTR ERVL 1 533 0 2 1459 372 277 0 0 chr1 114678625 114678719 -82516713 + MT2A LTR ERVL 128 221 -312 2 1459 1541 142 8 0 chr1 114678727 114678967 -82516465 - Lx LINE L1 -322 5561 5320 2 1459 1537 110 0 0 chr1 114678968 114679186 -82516246 + Lx LINE L1 5654 5871 -783 2 1459 342 0 47 0 chr1 114680193 114680236 -82515196 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 2 1459 850 175 6 6 chr1 114680236 114680414 -82515018 + CT-rich Low_complexity Low_complexity 3 180 0 2 1459 396 271 34 129 chr1 114680633 114680811 -82514621 - MTE2b LTR MaLR -52 327 167 2 1459 28 48 0 0 chr1 114681263 114681305 -82514127 + AT_rich Low_complexity Low_complexity 1 42 0 2 1459 574 324 18 39 chr1 114682701 114683041 -82512391 + MuRRS4-int LTR ERV1 591 903 -3787 2 1459 462 18 0 0 chr1 114683323 114683378 -82512054 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1459 579 282 35 18 chr1 114683484 114683711 -82511721 + MuRRS4-int LTR ERV1 1041 1271 -3792 2 1459 2870 353 44 35 chr1 114683847 114686582 -82508850 + RLTR4_MM-int LTR ERV1 2531 5233 -2323 2 1460 7423 134 19 12 chr1 114688267 114689475 -82505957 + Lx2 LINE L1 5780 6996 -1 2 1460 392 335 14 14 chr1 114689543 114689752 -82505680 + MuRRS4-int LTR ERV1 4523 4731 -332 2 1460 21287 172 33 50 chr1 114689829 114691187 -82504245 + MurERV4_19-int LTR ERVK 1210 2610 -3170 2 1460 297 0 0 0 chr1 114691187 114691220 -82504212 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1460 21287 172 33 50 chr1 114691220 114691343 -82504089 + MurERV4_19-int LTR ERVK 2611 2754 -3024 2 1460 934 111 0 0 chr1 114691343 114691469 -82503963 - L1_Mus1 LINE L1 -101 6466 6341 2 1460 619 77 9 19 chr1 114691471 114691577 -82503855 + L1Md_F2 LINE L1 6466 6570 -12 2 1460 21287 172 33 50 chr1 114691577 114694445 -82500987 + MurERV4_19-int LTR ERVK 2757 5610 -170 2 1460 19626 64 5 1 chr1 114694454 114697733 -82497699 - L1Md_F2 LINE L1 -1 6584 3292 2 1460 7305 70 2 8 chr1 114697735 114699542 -82495890 - L1Md_F2 LINE L1 -3654 2232 340 2 1460 643 164 15 0 chr1 114699543 114699677 -82495755 + MurERV4_19-int LTR ERVK 5645 5780 0 2 1460 1462 302 25 40 chr1 114699716 114700195 -82495237 + RMER19C LTR ERVK 138 609 -2 2 1460 192 125 0 0 chr1 114700197 114700229 -82495203 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1460 567 322 22 22 chr1 114700558 114700742 -82494690 - MTE2b LTR MaLR -11 368 185 2 1460 10519 78 1 0 chr1 114700742 114702147 -82493285 + L1Md_F2 LINE L1 4180 5586 -297 2 1460 7556 64 9 1 chr1 114702148 114703134 -82492298 + L1Md_F2 LINE L1 5588 6581 -1 2 1460 536 0 0 15 chr1 114703378 114703443 -82491989 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1460 499 278 13 26 chr1 114703443 114703598 -82491834 - MTE2b LTR MaLR -206 153 1 2 1460 1882 215 107 8 chr1 114703679 114703751 -82491681 - RLTR11A2 LTR ERVK -2 525 452 2 1460 375 60 0 0 chr1 114703751 114703801 -82491631 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2 1460 1882 215 107 8 chr1 114703801 114704206 -82491226 - RLTR11A2 LTR ERVK -76 451 3 2 1460 21 0 0 0 chr1 114704644 114704665 -82490767 + AT_rich Low_complexity Low_complexity 1 21 0 3 1460 191 367 55 0 chr1 114704870 114704998 -82490434 - MIRb SINE MIR -32 236 102 3 1460 703 217 257 10 chr1 114706504 114706711 -82488721 + MTEb LTR MaLR 122 379 0 3 1460 256 276 26 26 chr1 114707248 114707326 -82488106 + MTE2a LTR MaLR 278 355 -24 3 1460 235 352 49 0 chr1 114707402 114707524 -82487908 - MLT1A0 LTR MaLR -223 142 15 3 1460 34 42 0 0 chr1 114708011 114708059 -82487373 + AT_rich Low_complexity Low_complexity 1 48 0 3 1460 394 318 62 31 chr1 114708079 114708209 -82487223 - RSINE1 SINE B4 -12 153 20 3 1460 660 213 65 39 chr1 114709112 114709342 -82486090 - Lx7 LINE L1 -8 7688 7453 3 1460 501 120 0 0 chr1 114709431 114709523 -82485909 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 1460 28 48 0 0 chr1 114711131 114711173 -82484259 + AT_rich Low_complexity Low_complexity 1 42 0 3 1460 765 241 5 101 chr1 114711262 114711479 -82483953 - RLTR14 LTR ERV1 -186 196 1 3 1460 507 274 0 111 chr1 114712008 114712180 -82483252 - B4A SINE B4 0 292 140 3 1460 2698 209 41 12 chr1 114712185 114712770 -82482662 - RMER6A LTR ERVK 0 756 155 3 1460 37871 43 1 3 chr1 114712772 114719045 -82476387 - L1Md_T LINE L1 0 6585 230 3 1460 753 196 25 0 chr1 114719046 114719204 -82476228 - RMER6A LTR ERVK -594 162 1 3 1460 288 361 18 27 chr1 114719211 114719322 -82476110 - B4A SINE B4 -173 119 10 3 1460 297 0 0 0 chr1 114719351 114719384 -82476048 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1460 297 324 13 78 chr1 114719688 114719842 -82475590 - MTD LTR MaLR -275 144 1 3 1460 231 61 0 0 chr1 114720831 114720864 -82474568 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1460 234 254 28 0 chr1 114720864 114720935 -82474497 + MTEb LTR MaLR 305 377 -2 3 1460 255 271 171 0 chr1 114721316 114721386 -82474046 + ID SINE ID 8 89 -135 3 1460 315 0 0 0 chr1 114722215 114722250 -82473182 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1460 896 82 74 0 chr1 114722259 114722381 -82473051 - B1_Mus1 SINE Alu -17 131 1 3 1460 331 264 104 47 chr1 114722708 114722914 -82472518 - MMERGLN-int LTR ERV1 -3982 3796 3446 3 1460 405 0 0 0 chr1 114722959 114723004 -82472428 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1460 608 375 30 39 chr1 114723021 114723931 -82471501 - MMERGLN-int LTR ERV1 -4091 3465 2536 3 1460 5253 53 3 5 chr1 114723967 114724633 -82470799 - L1Md_F2 LINE L1 0 6582 5918 3 1460 385 317 65 30 chr1 114725613 114725844 -82469588 - MMERGLN-int LTR ERV1 -6139 1639 1401 3 1460 587 335 5 66 chr1 114727009 114727143 -82468289 + B3A SINE B2 1 135 -63 3 1460 3722 42 5 0 chr1 114727143 114727577 -82467855 + RLTR10C LTR ERVK 1 436 0 3 1460 587 335 5 66 chr1 114727577 114727653 -82467779 + B3A SINE B2 136 198 0 3 1460 663 263 85 1 chr1 114728035 114728276 -82467156 + Lx9 LINE L1 5631 5924 -1720 3 1460 216 103 0 25 chr1 114728278 114728318 -82467114 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1460 1189 331 21 32 chr1 114728547 114729109 -82466323 + Lx9 LINE L1 6459 7014 -630 3 1460 1098 286 34 43 chr1 114729109 114729432 -82466000 - ORR1D2 LTR MaLR -22 348 27 3 1460 3794 128 34 0 chr1 114729432 114729996 -82465436 + MT2B2 LTR ERVL 1 583 -1 3 1460 1098 286 34 43 chr1 114729996 114730023 -82465409 - ORR1D2 LTR MaLR -344 26 1 3 1460 376 289 34 34 chr1 114730103 114730250 -82465182 + Lx9 LINE L1 7080 7226 -418 3 1460 812 321 59 56 chr1 114730396 114730736 -82464696 + MTD LTR MaLR 74 414 -5 3 1460 431 365 54 6 chr1 114730740 114730908 -82464524 - B3A SINE B2 -22 176 1 3 1460 1960 234 9 99 chr1 114731211 114731479 -82463953 - RMER20B LTR ERVK -121 506 289 3 1460 1013 107 6 27 chr1 114731479 114731662 -82463770 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 3 1460 840 96 0 118 chr1 114731662 114731815 -82463617 - B1_Mus1 SINE Alu -13 135 1 3 1460 1960 234 9 99 chr1 114731815 114732101 -82463331 - RMER20B LTR ERVK -339 288 2 3 1460 500 322 82 120 chr1 114732838 114733230 -82462202 + MTE2a LTR MaLR 1 377 -2 3 1460 423 0 0 0 chr1 114733241 114733288 -82462144 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1460 549 30 0 0 chr1 114733288 114733354 -82462078 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1460 303 330 0 0 chr1 114733370 114733476 -82461956 + MTD LTR MaLR 53 158 -261 3 1460 230 289 78 13 chr1 114733609 114733686 -82461746 + MTD LTR MaLR 270 351 -68 3 1460 221 57 29 0 chr1 114733696 114733731 -82461701 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1460 271 229 0 24 chr1 114733733 114733811 -82461621 + MTD LTR MaLR 287 407 -12 3 1460 33758 35 1 0 chr1 114734697 114740605 -82454827 + L1Md_T LINE L1 1 5589 -297 3 1460 8981 6 0 2 chr1 114740605 114741603 -82453829 + L1Md_T LINE L1 5590 6585 0 3 1460 736 11 21 0 chr1 114742027 114742120 -82453312 + (GA)n Simple_repeat Simple_repeat 1 95 0 3 1460 5140 116 15 0 chr1 114742260 114743011 -82452421 - Lx LINE L1 0 6654 5893 3 1460 1277 199 58 55 chr1 114743035 114743360 -82452072 + ORR1A3 LTR MaLR 1 326 0 3 1460 22 35 0 0 chr1 114744046 114744075 -82451357 + AT_rich Low_complexity Low_complexity 1 29 0 3 1460 337 362 71 71 chr1 114744480 114744777 -82450655 - RLTR25A LTR ERVK -773 330 34 3 1460 491 270 63 0 chr1 114744798 114744924 -82450508 + MTE2b LTR MaLR 11 144 -235 3 1460 252 296 78 49 chr1 114744924 114744935 -82450497 + MT2A LTR ERVL 11 151 -382 3 1460 237 33 0 0 chr1 114745131 114745161 -82450271 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1460 459 250 103 103 chr1 114745421 114745653 -82449779 + MTE2b LTR MaLR 143 374 -5 3 1460 279 307 13 0 chr1 114747107 114747182 -82448250 - B3A SINE B2 -66 132 57 3 1460 1165 111 0 0 chr1 114748108 114748279 -82447153 - Lx3_Mus LINE L1 -188 6821 6651 3 1460 435 275 41 82 chr1 114749374 114749408 -82446024 - B2_Mm2 SINE B2 -8 187 157 3 1460 497 58 0 14 chr1 114749408 114749478 -82445954 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1460 661 298 19 6 chr1 114749478 114749637 -82445795 - B3A SINE B2 -36 162 2 3 1460 317 271 12 0 chr1 114750160 114750253 -82445179 + MTEb LTR MaLR 5 98 -281 3 1460 437 254 41 25 chr1 114750255 114750376 -82445056 + MTEb LTR MaLR 60 182 -197 3 1460 246 136 0 0 chr1 114750376 114750420 -82445012 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1460 500 335 33 23 chr1 114750420 114750634 -82444798 + MTEb LTR MaLR 164 379 0 3 1460 367 52 35 0 chr1 114751173 114751231 -82444201 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1460 283 358 19 9 chr1 114751237 114751344 -82444088 - RSINE1 SINE B4 -46 119 12 3 1460 1501 207 78 40 chr1 114752280 114752627 -82442805 - ORR1C1 LTR MaLR -18 360 1 3 1460 1180 256 143 13 chr1 114752709 114753140 -82442292 + MT2A LTR ERVL 2 557 -27 3 1460 906 69 35 6 chr1 114754613 114754787 -82440645 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 3 1460 328 276 62 136 chr1 114755101 114755277 -82440155 - LTR48B LTR ERV1 -479 165 3 3 1460 1646 224 13 8 chr1 114755316 114755698 -82439734 - ORR1C2 LTR MaLR 0 384 1 3 1460 2675 151 21 25 chr1 114755825 114756301 -82439131 + Lx LINE L1 6173 6646 -8 3 1460 657 261 70 33 chr1 114756364 114756578 -82438854 + RMER5 LTR ERV1 43 264 -270 3 1460 1394 99 8 4 chr1 114756607 114756851 -82438581 - MusHAL1 LINE L1 -2449 263 19 3 1460 775 307 25 19 chr1 114756841 114757206 -82438226 - L1VL4 LINE L1 -5732 570 204 3 1460 21 82 0 0 chr1 114757521 114757570 -82437862 + AT_rich Low_complexity Low_complexity 1 49 0 3 1460 1191 270 71 14 chr1 114759331 114759681 -82435751 - ORR1D2 LTR MaLR 0 370 1 3 1460 1866 297 83 69 chr1 114759681 114759760 -82435672 - ORR1D2-int LTR MaLR 0 1370 1282 3 1460 202 0 29 57 chr1 114759760 114759795 -82435637 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1460 1866 297 83 69 chr1 114759795 114760631 -82434801 - ORR1D2-int LTR MaLR -89 1281 442 3 1460 34650 35 1 7 chr1 114761355 114766539 -82428893 + L1Md_T LINE L1 440 5586 -297 3 1460 8253 43 0 0 chr1 114766540 114767535 -82427897 + L1Md_T LINE L1 5588 6582 0 3 1460 21 36 0 0 chr1 114767652 114767680 -82427752 + AT_rich Low_complexity Low_complexity 1 28 0 3 1460 1242 120 0 0 chr1 114768145 114768397 -82427035 + (TG)n Simple_repeat Simple_repeat 1 252 0 3 1460 24 53 0 0 chr1 114768632 114768670 -82426762 + AT_rich Low_complexity Low_complexity 1 38 0 3 1460 21 57 0 0 chr1 114768722 114768757 -82426675 + AT_rich Low_complexity Low_complexity 1 35 0 3 1460 255 163 0 0 chr1 114769639 114769667 -82425765 + A-rich Low_complexity Low_complexity 1 28 0 3 1460 561 64 0 0 chr1 114769667 114769745 -82425687 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 3 1460 255 163 0 0 chr1 114769745 114769765 -82425667 + A-rich Low_complexity Low_complexity 29 48 0 3 1460 26 50 0 0 chr1 114769880 114769920 -82425512 + AT_rich Low_complexity Low_complexity 1 40 0 3 1460 478 185 77 25 chr1 114769968 114770085 -82425347 - B1_Mur1 SINE Alu -1 148 9 3 1460 665 313 31 38 chr1 114773451 114773743 -82421689 - B4 SINE B4 -1 291 2 3 1460 983 139 48 0 chr1 114774182 114774347 -82421085 - B2_Mm2 SINE B2 -19 176 4 3 1460 18220 112 11 22 chr1 114774381 114776367 -82419065 - Lx3A LINE L1 -2 6979 5013 3 1460 304 89 0 0 chr1 114776367 114776412 -82419020 - B1_Mus1 SINE Alu -67 81 37 3 1460 18220 112 11 22 chr1 114776412 114779350 -82416082 - Lx3A LINE L1 -2 5012 2100 3 1460 12935 84 2 9 chr1 114779356 114781866 -82413566 + L1Md_F LINE L1 567 3058 -2825 3 1460 6652 123 58 17 chr1 114781866 114782058 -82413374 + MERVK26-int LTR ERVK 62 257 -6662 3 1460 2146 92 16 3 chr1 114782058 114782362 -82413070 + L1_Mus1 LINE L1 6260 6567 0 3 1460 6652 123 58 17 chr1 114782362 114782746 -82412686 + MERVK26-int LTR ERVK 258 661 -6258 3 1460 201 39 0 0 chr1 114782746 114782772 -82412660 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1460 6652 123 58 17 chr1 114782772 114783281 -82412151 + MERVK26-int LTR ERVK 662 1192 -5727 3 1460 309 242 24 17 chr1 114783281 114783378 -82412054 - RMER17A2 LTR ERVK -542 100 1 3 1460 4926 163 73 6 chr1 114783378 114784807 -82410625 - L1_Mur1 LINE L1 -4138 1748 208 3 1460 28 71 0 0 chr1 114786297 114786353 -82409079 + AT_rich Low_complexity Low_complexity 1 56 0 3 1460 1215 258 149 53 chr1 114787252 114787749 -82407683 - RLTR16 LTR ERVK -2 503 6 3 1460 269 300 14 0 chr1 114787805 114787875 -82407557 + MER21B LTR ERV1 17 87 -776 3 1460 271 121 17 17 chr1 114787888 114787947 -82407485 + CT-rich Low_complexity Low_complexity 6 64 0 3 1460 473 344 109 34 chr1 114788267 114788589 -82406843 + MER21B LTR ERV1 466 811 -52 3 1460 21 36 0 0 chr1 114788598 114788626 -82406806 + AT_rich Low_complexity Low_complexity 1 28 0 3 1460 2021 206 88 2 chr1 114788631 114788844 -82406588 + RLTR12A LTR ERVK 1 249 -319 3 1460 570 29 0 0 chr1 114788844 114788912 -82406520 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1460 2021 206 88 2 chr1 114788912 114789117 -82406315 + RLTR12A LTR ERVK 250 455 -113 3 1460 609 110 0 0 chr1 114789117 114789208 -82406224 + (TTTA)n Simple_repeat Simple_repeat 1 91 0 3 1460 1050 79 7 0 chr1 114789208 114789348 -82406084 - B1_Mus1 SINE Alu -1 147 7 3 1460 1589 185 10 0 chr1 114789354 114789646 -82405786 - ORR1A1 LTR MaLR -51 295 1 4 1460 3162 137 14 61 chr1 114789646 114790080 -82405352 - ORR1A1-int LTR MaLR 0 1963 1556 4 1460 1051 103 7 0 chr1 114790080 114790226 -82405206 - B1_Mus2 SINE Alu 0 147 1 4 1460 3162 223 82 35 chr1 114790226 114790771 -82404661 - ORR1A1-int LTR MaLR -408 1555 719 4 1460 632 236 6 108 chr1 114790730 114790906 -82404526 - MT2B LTR ERVL -314 287 130 4 1460 539 209 0 0 chr1 114790838 114790953 -82404479 - ORR1A1-int LTR MaLR -1194 598 484 4 1460 17278 184 95 11 chr1 114790953 114796392 -82399040 - Lx LINE L1 -242 6412 493 4 1460 427 270 0 17 chr1 114796420 114796537 -82398895 + RLTR12A LTR ERVK 450 564 -4 3 1460 351 393 22 17 chr1 114796605 114796786 -82398646 + B3A SINE B2 1 182 -16 4 1460 267 79 0 0 chr1 114797245 114797283 -82398149 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1460 384 324 76 44 chr1 114798033 114798336 -82397096 - RLTR12B LTR ERVK -68 291 38 4 1460 1006 104 0 0 chr1 114798336 114798471 -82396961 + B1_Mm SINE Alu 1 135 -12 4 1460 441 0 0 0 chr1 114798472 114798521 -82396911 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1460 384 311 82 62 chr1 114798521 114798618 -82396814 - RLTR12B LTR ERVK -419 109 17 4 1460 225 294 14 35 chr1 114799554 114799584 -82395848 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 4 1460 1571 231 25 8 chr1 114799584 114799947 -82395485 - ORR1D1 LTR MaLR -3 371 3 4 1460 225 294 14 35 chr1 114799947 114800057 -82395375 + (TATATG)n Simple_repeat Simple_repeat 1 110 0 4 1460 848 296 75 99 chr1 114800063 114800438 -82394994 + MTE2a LTR MaLR 1 366 -13 4 1460 659 341 64 13 chr1 114800455 114800690 -82394742 - B4A SINE B4 -44 248 2 4 1460 422 351 32 36 chr1 114801815 114802034 -82393398 + MT2A LTR ERVL 207 424 -109 4 1460 12685 144 41 10 chr1 114802442 114805129 -82390303 - L1_Mur1 LINE L1 -2056 3830 954 4 1460 231 36 0 0 chr1 114805129 114805157 -82390275 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 4 1460 4765 183 206 6 chr1 114805157 114805891 -82389541 - L1_Mur1 LINE L1 -6031 953 3 4 1460 229 315 19 0 chr1 114806829 114806937 -82388495 + (TG)n Simple_repeat Simple_repeat 1 110 0 4 1460 482 279 100 97 chr1 114806944 114807234 -82388198 - B4 SINE B4 -1 291 1 4 1460 279 0 0 0 chr1 114807458 114807489 -82387943 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 1460 648 0 0 0 chr1 114807706 114807778 -82387654 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1460 23 0 0 0 chr1 114808581 114808604 -82386828 + AT_rich Low_complexity Low_complexity 1 23 0 4 1460 427 344 19 26 chr1 114808658 114808813 -82386619 + B4 SINE B4 130 283 -9 4 1460 651 87 0 0 chr1 114808913 114809017 -82386415 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 1460 2508 160 33 20 chr1 114809140 114809592 -82385840 + RMER17B LTR ERVK 497 954 -4 4 1460 360 43 0 0 chr1 114809593 114809639 -82385793 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1460 301 341 90 8 chr1 114809792 114809925 -82385507 - MLT1A0 LTR MaLR -157 208 65 4 1460 219 167 0 0 chr1 114810121 114810163 -82385269 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1460 407 336 48 37 chr1 114810480 114810749 -82384683 - RLTR16 LTR ERVK -231 274 3 4 1460 3589 229 76 40 chr1 114810790 114812472 -82382960 - MYSERV16_I-int LTR ERVK -240 2602 288 4 1460 529 232 27 82 chr1 114812472 114812655 -82382777 - RMER3D-int LTR ERVK -1451 1391 1219 4 1460 294 0 62 47 chr1 114812657 114812721 -82382711 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 4 1460 459 0 0 0 chr1 114812724 114812775 -82382657 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1460 541 169 0 51 chr1 114812781 114812918 -82382514 - RMER3D-int LTR ERVK -1626 1216 1087 4 1460 351 0 0 0 chr1 114812918 114812957 -82382475 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1460 376 171 0 26 chr1 114812984 114813062 -82382370 - RMER3D-int LTR ERVK -1753 1089 1014 4 1460 540 111 0 0 chr1 114813081 114813162 -82382270 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 4 1460 275 240 53 0 chr1 114813312 114813387 -82382045 - RMER3D-int LTR ERVK -2160 682 604 4 1460 5760 51 18 3 chr1 114813393 114814123 -82381309 - L1Md_F2 LINE L1 -1 6581 5841 4 1460 527 246 81 89 chr1 114814478 114814714 -82380718 - RMER3D-int LTR ERVK -2599 243 10 4 1460 1078 89 7 0 chr1 114815037 114815183 -82380249 + B1_Mus1 SINE Alu 1 147 -1 4 1460 1270 114 13 83 chr1 114815339 114815568 -82379864 - L1_Mus2 LINE L1 0 6566 6354 4 1460 2452 87 0 0 chr1 114815568 114815889 -82379543 + L1_Mus2 LINE L1 6040 6360 -206 4 1460 6776 71 0 25 chr1 114815894 114816817 -82378615 - L1Md_F2 LINE L1 -1 6581 5682 4 1460 481 296 148 0 chr1 114816821 114816990 -82378442 + B3A SINE B2 3 196 -2 4 1460 247 92 25 62 chr1 114817508 114817589 -82377843 + A-rich Low_complexity Low_complexity 3 80 0 4 1460 219 125 0 0 chr1 114817695 114817735 -82377697 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1460 2547 80 24 0 chr1 114818396 114818735 -82376697 - L1_Mm LINE L1 -176 5707 5361 4 1460 316 59 20 0 chr1 114818735 114818786 -82376646 + L1_Mus2 LINE L1 6515 6566 0 4 1460 516 72 0 0 chr1 114818939 114819008 -82376424 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 182 232 335 122 115 chr1 114819034 114819321 -82376111 - B4 SINE B4 -2 290 2 4 1461 736 366 31 24 chr1 114819516 114819804 -82375628 + B4A SINE B4 1 290 -2 4 1461 975 342 16 19 chr1 114820106 114820478 -82374954 + MTEb LTR MaLR 8 378 -1 4 1461 198 103 0 0 chr1 114820755 114820784 -82374648 + (TATG)n Simple_repeat Simple_repeat 2 30 0 4 1461 239 303 50 50 chr1 114821666 114821746 -82373686 + B3 SINE B2 1 80 -136 4 1461 469 246 0 47 chr1 114822189 114822317 -82373115 + RLTR43A LTR ERVK 243 364 0 4 1461 746 294 33 46 chr1 114822317 114822623 -82372809 + Lx9 LINE L1 6884 7185 -459 4 1461 501 121 55 0 chr1 114822624 114822715 -82372717 + B2_Mm1t SINE B2 96 191 -2 4 1461 453 259 60 0 chr1 114822949 114823065 -82372367 - ORR1D2 LTR MaLR -2 368 246 4 1461 487 312 72 30 chr1 114823084 114823345 -82372087 - RLTR20B3 LTR ERVK -347 221 1 4 1461 778 300 95 9 chr1 114823345 114823575 -82371857 - ORR1D2 LTR MaLR -120 250 1 4 1461 3317 234 53 15 chr1 114824047 114825497 -82369935 + L1_Mur2 LINE L1 916 2427 -3450 4 1461 2202 158 23 65 chr1 114825497 114825970 -82369462 - RLTR11B LTR ERVK 0 453 1 4 1461 2965 24 0 0 chr1 114825972 114826309 -82369123 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1461 35678 27 8 15 chr1 114826309 114830535 -82364897 + IAPEz-int LTR ERVK 8 4205 -2276 4 1461 10494 10 2 0 chr1 114830531 114831691 -82363741 + IAPEz-int LTR ERVK 5320 6481 0 4 1461 2978 21 0 0 chr1 114831691 114832028 -82363404 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1461 5211 261 68 51 chr1 114832061 114834314 -82361118 - MYSERV16_I-int LTR ERVK -14 2312 21 4 1461 2428 196 30 15 chr1 114834419 114834953 -82360479 + L1VL4 LINE L1 402 943 -5359 4 1461 1248 62 0 0 chr1 114834987 114835149 -82360283 - L1_Mus1 LINE L1 -1 6566 6405 4 1461 895 259 64 72 chr1 114835150 114835474 -82359958 - ORR1D1 LTR MaLR -59 308 3 4 1461 396 0 0 0 chr1 114835523 114835567 -82359865 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1461 309 159 0 0 chr1 114835568 114835631 -82359801 + GA-rich Low_complexity Low_complexity 2 64 0 4 1461 378 303 60 23 chr1 114835658 114835874 -82359558 - Lx9 LINE L1 -172 7472 7249 4 1461 333 157 29 0 chr1 114836164 114836234 -82359198 - Lx9 LINE L1 -158 7486 7415 4 1461 8511 24 1 0 chr1 114836238 114837458 -82357974 - L1Md_T LINE L1 0 6582 5362 4 1461 4399 63 3 0 chr1 114837442 114838011 -82357421 - L1Md_T LINE L1 -203 5680 5110 4 1461 6308 124 47 6 chr1 114838005 114839073 -82356359 + MusHAL1 LINE L1 698 1809 -903 4 1461 3678 151 25 8 chr1 114839078 114839720 -82355712 + L1_Mus4 LINE L1 5978 6630 -6 4 1461 3235 185 61 61 chr1 114840133 114840442 -82354990 + RLTR17 LTR ERVK 1 319 -373 4 1461 3379 81 2 0 chr1 114840442 114840888 -82354544 + L1_Mus1 LINE L1 6117 6563 -4 4 1461 3235 185 61 61 chr1 114840888 114841270 -82354162 + RLTR17 LTR ERVK 320 692 0 4 1461 1842 119 128 33 chr1 114841897 114842263 -82353169 - RLTR11B LTR ERVK 0 453 53 4 1461 1815 160 29 0 chr1 114842266 114842647 -82352785 + L1_Mur2 LINE L1 3017 3408 -2469 4 1461 3505 184 25 3 chr1 114842644 114843351 -82352081 - Lx4A LINE L1 -663 6395 5673 4 1461 1442 171 16 12 chr1 114843348 114843590 -82351842 + Lx4A LINE L1 6709 6951 -107 4 1461 840 132 0 0 chr1 114843677 114843813 -82351619 + L1_Mur2 LINE L1 3540 3675 -2202 4 1461 832 179 35 20 chr1 114843828 114844027 -82351405 - L1_Mur2 LINE L1 -1990 3887 3686 4 1461 192 97 0 0 chr1 114844329 114844360 -82351072 + (GCTTG)n Simple_repeat Simple_repeat 3 33 0 4 1461 1155 248 130 66 chr1 114844513 114844993 -82350439 - RLTR20B3 LTR ERVK -56 521 19 4 1461 873 169 0 13 chr1 114845264 114845414 -82350018 - B1_Mus1 SINE Alu 0 148 1 4 1461 237 373 54 9 chr1 114845606 114845717 -82349715 - B4A SINE B4 -120 172 57 4 1461 21 0 0 0 chr1 114846108 114846129 -82349303 + AT_rich Low_complexity Low_complexity 1 21 0 4 1461 1057 293 67 23 chr1 114846478 114846824 -82348608 - MTE2b LTR MaLR -14 365 5 4 1461 363 44 0 0 chr1 114846824 114846869 -82348563 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1461 345 82 0 0 chr1 114846966 114847015 -82348417 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1461 4643 78 25 28 chr1 114847455 114848123 -82347309 + L1_Mus2 LINE L1 5901 6566 0 4 1461 4286 117 36 3 chr1 114848178 114848819 -82346613 + Lx LINE L1 5981 6642 -12 4 1461 212 91 34 68 chr1 114848820 114848879 -82346553 + (TATAA)n Simple_repeat Simple_repeat 5 61 0 4 1461 511 15 29 0 chr1 114848881 114848949 -82346483 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1461 512 350 70 15 chr1 114849815 114850085 -82345347 + B4A SINE B4 3 287 -5 4 1461 566 147 158 30 chr1 114852183 114852234 -82343198 + RMER17B LTR ERVK 362 431 -527 4 1461 642 26 0 0 chr1 114852234 114852310 -82343122 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 1461 566 147 158 30 chr1 114852310 114852391 -82343041 + RMER17B LTR ERVK 432 511 -447 4 1461 440 286 101 83 chr1 114852383 114852758 -82342674 + RMER17B LTR ERVK 474 939 -19 4 1461 222 371 68 20 chr1 114852721 114852867 -82342565 - B4A SINE B4 -123 169 17 4 1461 245 304 0 0 chr1 114853327 114853406 -82342026 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 4 1461 596 327 112 4 chr1 114853500 114853758 -82341674 - Lx8 LINE L1 -142 7331 7046 4 1461 406 192 92 22 chr1 114853758 114853893 -82341539 - RMER21B LTR ERV1 0 842 592 4 1461 333 47 0 0 chr1 114855264 114855307 -82340125 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1461 383 359 10 85 chr1 114855495 114855696 -82339736 - B4A SINE B4 -105 187 2 4 1461 345 346 108 16 chr1 114855699 114855884 -82339548 - B4A SINE B4 -80 212 11 4 1461 370 252 136 37 chr1 114855883 114856097 -82339335 - MER46C DNA MER2_type -39 299 65 4 1461 301 298 90 8 chr1 114856424 114856546 -82338886 + ORR1D2 LTR MaLR 239 370 0 4 1461 1078 71 14 0 chr1 114856962 114857103 -82338329 - B1_Mus2 SINE Alu 0 147 5 4 1461 399 333 0 0 chr1 114857536 114857638 -82337794 - ID_B1 SINE B4 -8 216 115 5 1461 579 260 8 0 chr1 114857987 114858110 -82337322 + B1_Mur2 SINE Alu 26 149 0 5 1461 500 308 75 0 chr1 114858238 114858384 -82337048 + RSINE1 SINE B4 9 165 0 5 1461 228 35 0 0 chr1 114858710 114858739 -82336693 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1461 435 269 138 55 chr1 114859024 114859205 -82336227 - RMER15 LTR ERVL 0 575 380 5 1461 462 75 0 0 chr1 114859481 114859548 -82335884 + (A)n Simple_repeat Simple_repeat 1 67 0 5 1461 241 274 32 0 chr1 114859834 114859896 -82335536 - Lx7 LINE L1 -858 6838 6775 5 1461 2474 239 78 70 chr1 114859894 114860417 -82335015 + Lx7 LINE L1 6844 7351 -345 5 1461 198 0 0 0 chr1 114860417 114860439 -82334993 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1461 2474 239 78 70 chr1 114860439 114860761 -82334671 + Lx7 LINE L1 7352 7695 -1 5 1461 259 261 14 0 chr1 114861332 114861401 -82334031 + GA-rich Low_complexity Low_complexity 1 70 0 5 1461 23 54 0 0 chr1 114861504 114861541 -82333891 + AT_rich Low_complexity Low_complexity 1 37 0 5 1461 309 229 0 79 chr1 114861610 114861686 -82333746 - ORR1D2 LTR MaLR -300 70 1 5 1461 512 238 149 39 chr1 114861819 114862027 -82333405 - MTD LTR MaLR -14 407 194 5 1461 2562 195 63 78 chr1 114862378 114863030 -82332402 + RLTR26 LTR ERVK 1 642 0 5 1461 666 0 0 0 chr1 114863550 114863624 -82331808 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1461 847 301 31 4 chr1 114863645 114863872 -82331560 - MTD LTR MaLR -186 233 1 5 1461 1283 282 86 92 chr1 114863872 114864032 -82331400 - MTD-int LTR MaLR 0 1258 1094 5 1461 1212 61 0 0 chr1 114864032 114864179 -82331253 + B1_Mus2 SINE Alu 1 147 0 5 1461 1283 292 96 87 chr1 114864179 114864774 -82330658 - MTD-int LTR MaLR -175 1405 610 5 1461 851 300 5 0 chr1 114864849 114865039 -82330393 - MTE2b LTR MaLR -162 217 27 5 1461 337 183 0 27 chr1 114865040 114865113 -82330319 - RLTR15 LTR ERVK -74 285 215 5 1461 308 263 84 0 chr1 114865130 114865225 -82330207 - MER58C DNA MER1_type 0 215 113 5 1461 21 0 0 0 chr1 114866338 114866359 -82329073 + AT_rich Low_complexity Low_complexity 1 21 0 5 1461 246 341 0 12 chr1 114866410 114866496 -82328936 - B4A SINE B4 -207 85 1 5 1461 4133 168 47 43 chr1 114867000 114867903 -82327529 - RMER17A2 LTR ERVK 0 906 1 5 1461 25 51 0 0 chr1 114868035 114868074 -82327358 + AT_rich Low_complexity Low_complexity 1 39 0 5 1461 760 298 49 4 chr1 114868565 114868828 -82326604 + B4A SINE B4 9 283 -9 5 1461 369 164 0 0 chr1 114869497 114869570 -82325862 + CT-rich Low_complexity Low_complexity 1 73 0 5 1461 180 133 42 62 chr1 114869627 114869675 -82325757 - L3 LINE CR1 -3591 898 852 5 1461 22 35 0 0 chr1 114869679 114869708 -82325724 + AT_rich Low_complexity Low_complexity 1 29 0 5 1461 195 147 59 0 chr1 114870458 114870526 -82324906 + CT-rich Low_complexity Low_complexity 3 74 0 5 1461 666 0 0 0 chr1 114870562 114870636 -82324796 + (TCC)n Simple_repeat Simple_repeat 2 75 0 5 1461 429 20 0 0 chr1 114871290 114871340 -82324092 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1461 321 360 40 68 chr1 114871389 114871639 -82323793 + MTC LTR MaLR 167 409 -12 5 1461 999 320 65 14 chr1 114871700 114872032 -82323400 - ORR1E LTR MaLR -3 416 9 5 1461 297 422 37 6 chr1 114872632 114872794 -82322638 + B4A SINE B4 2 168 -124 5 1461 276 347 69 17 chr1 114873533 114873706 -82321726 - MLT1I LTR MaLR -197 214 33 5 1461 352 276 286 27 chr1 114874010 114874230 -82321202 - RMER15 LTR ERVL 0 575 299 5 1461 218 147 54 18 chr1 114874585 114874696 -82320736 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 5 1461 216 247 49 0 chr1 114874709 114874790 -82320642 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 5 1461 1278 275 41 17 chr1 114875328 114875690 -82319742 + MTEb LTR MaLR 3 373 -6 5 1461 519 48 36 0 chr1 114876502 114876585 -82318847 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 5 1461 267 312 7 0 chr1 114876622 114876760 -82318672 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 1461 387 335 61 155 chr1 114877022 114877095 -82318337 + B4A SINE B4 18 76 -216 5 1461 296 24 24 0 chr1 114877095 114877136 -82318296 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 5 1461 387 335 61 155 chr1 114877136 114877359 -82318073 + B4A SINE B4 77 286 -6 5 1461 844 188 138 0 chr1 114877652 114877833 -82317599 + ORR1B1 LTR MaLR 20 225 -169 5 1461 283 136 0 0 chr1 114877833 114877877 -82317555 + MERVL_2A-int LTR ERVL 745 788 -4697 5 1461 543 226 6 49 chr1 114877863 114878026 -82317406 + MERVL_2A-int LTR ERVL 950 1105 -4380 5 1461 4325 83 7 3 chr1 114878035 114878640 -82316792 - L1_Mm LINE L1 -2333 3550 2943 5 1461 4747 78 43 8 chr1 114878640 114879308 -82316124 + L1Md_F2 LINE L1 5891 6582 0 5 1461 4325 83 7 3 chr1 114879308 114879319 -82316113 - L1_Mm LINE L1 -2941 2942 2932 5 1461 9791 171 22 2 chr1 114879319 114881001 -82314431 + MERVL_2A-int LTR ERVL 1254 2969 -2792 5 1461 2910 238 136 20 chr1 114881314 114882195 -82313237 - MERVL_2A-int LTR ERVL -3716 2045 1063 5 1461 8588 118 33 2 chr1 114882216 114883761 -82311671 - Lx3_Mus LINE L1 -19 6990 5389 5 1461 25507 123 42 16 chr1 114886593 114892316 -82303116 + L1_Mus2 LINE L1 727 6563 -3 5 1461 438 261 50 50 chr1 114896415 114896556 -82298876 - RLTR25B LTR ERVK -5 1023 883 5 1461 341 247 129 0 chr1 114896632 114896717 -82298715 - RLTR25B LTR ERVK -305 723 628 5 1461 1850 229 15 78 chr1 114897121 114897585 -82297847 - RLTR25B LTR ERVK -593 435 1 5 1461 372 319 42 25 chr1 114898727 114898846 -82296586 + B4 SINE B4 161 281 -11 5 1461 195 69 0 0 chr1 114898846 114898875 -82296557 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 5 1461 546 16 0 0 chr1 114898875 114898937 -82296495 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1461 212 125 50 0 chr1 114898938 114898978 -82296454 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 5 1461 305 250 82 75 chr1 114898995 114899129 -82296303 - B3 SINE B2 0 216 82 5 1461 423 410 39 55 chr1 114899801 114900162 -82295270 + MLT1E2 LTR MaLR 206 560 -67 5 1461 1463 244 70 22 chr1 114900438 114900840 -82294592 - MTC LTR MaLR 0 421 1 5 1461 207 0 0 0 chr1 114901397 114901420 -82294012 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1461 344 130 0 25 chr1 114901421 114901500 -82293932 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 5 1461 297 286 71 63 chr1 114901635 114901762 -82293670 - L2a LINE L2 -5 3421 3294 5 1461 33 0 0 0 chr1 114902495 114902528 -82292904 + AT_rich Low_complexity Low_complexity 1 33 0 5 1461 1558 281 48 71 chr1 114902640 114903263 -82292169 - RLTR18 LTR ERVK -7 609 1 5 1461 255 61 0 0 chr1 114903462 114903495 -82291937 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1461 234 0 0 0 chr1 114903512 114903538 -82291894 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1461 225 188 20 20 chr1 114903541 114903590 -82291842 - B4A SINE B4 -242 50 2 5 1461 597 287 216 4 chr1 114903672 114903931 -82291501 + MTD LTR MaLR 92 405 -14 5 1461 253 291 19 19 chr1 114903985 114904090 -82291342 + GA-rich Low_complexity Low_complexity 3 107 0 5 1461 320 336 101 11 chr1 114904091 114904291 -82291141 + B3A SINE B2 1 215 -1 5 1461 1084 75 7 0 chr1 114904340 114904486 -82290946 - B1_Mus2 SINE Alu 0 147 1 5 1461 240 23 21 64 chr1 114904490 114904537 -82290895 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 5 1461 468 341 54 29 chr1 114904699 114904977 -82290455 + RMER15 LTR ERVL 291 575 0 5 1461 276 198 56 34 chr1 114905022 114905111 -82290321 - L1M5 LINE L1 -742 5452 5362 5 1461 659 322 84 28 chr1 114905316 114905565 -82289867 - RMER12 LTR ERVK 0 1322 1060 5 1461 21 36 0 0 chr1 114905565 114905593 -82289839 + AT_rich Low_complexity Low_complexity 1 28 0 5 1461 23801 174 20 21 chr1 114905684 114907451 -82287981 + L1_Mus2 LINE L1 581 2421 -3465 5 1461 972 130 0 0 chr1 114907451 114907612 -82287820 + (GAAA)n Simple_repeat Simple_repeat 3 163 0 5 1461 23801 169 12 24 chr1 114907612 114908347 -82287085 + L1_Mus2 LINE L1 2422 3158 -2728 5 1461 396 0 0 0 chr1 114908347 114908391 -82287041 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1461 23801 155 12 21 chr1 114908391 114911259 -82284173 + L1_Mus2 LINE L1 3159 5983 -583 5 1461 405 89 0 0 chr1 114911260 114911316 -82284116 + L1_Mus2 LINE L1 6195 6250 -388 5 1461 708 215 35 11 chr1 114911324 114911498 -82283934 + L1_Mur3 LINE L1 4832 5009 -871 5 1461 268 333 12 0 chr1 114911503 114911587 -82283845 + ID_B1 SINE B4 132 216 -8 5 1461 243 103 0 0 chr1 114911672 114911711 -82283721 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 5 1461 655 302 66 80 chr1 114912087 114912495 -82282937 + MTE2a LTR MaLR 5 405 -14 5 1461 3216 19 0 0 chr1 114912651 114913018 -82282414 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1461 55238 20 20 6 chr1 114913018 114919406 -82276026 + IAPEz-int LTR ERVK 8 6481 0 5 1461 3216 19 0 0 chr1 114919406 114919773 -82275659 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1461 384 364 70 14 chr1 114920061 114920203 -82275229 + RSINE1 SINE B4 3 152 -13 5 1461 713 320 50 11 chr1 114920721 114920974 -82274458 + B4A SINE B4 1 264 -28 5 1461 342 0 0 0 chr1 114920974 114921012 -82274420 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1461 567 0 0 0 chr1 114921012 114921074 -82274358 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1461 713 320 50 11 chr1 114921074 114921100 -82274332 + B4A SINE B4 265 290 -2 5 1461 300 102 0 0 chr1 114921158 114921207 -82274225 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1461 369 0 0 0 chr1 114921207 114921247 -82274185 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1461 282 106 0 0 chr1 114921331 114921378 -82274054 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1461 593 93 0 9 chr1 114921378 114921486 -82273946 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 1461 192 158 0 0 chr1 114922027 114922065 -82273367 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1461 519 198 0 9 chr1 114922073 114922180 -82273252 + MTC LTR MaLR 14 119 -302 5 1461 207 167 0 0 chr1 114922181 114922217 -82273215 + (CCTAT)n Simple_repeat Simple_repeat 5 40 0 5 1461 857 107 7 0 chr1 114922217 114922357 -82273075 + (TC)n Simple_repeat Simple_repeat 2 142 0 5 1461 12736 186 30 13 chr1 114922357 114927290 -82268142 - Lx2A LINE L1 -13 6995 900 5 1461 1341 215 53 12 chr1 114927376 114927696 -82267736 + MTC LTR MaLR 85 417 -4 5 1461 318 320 94 0 chr1 114928072 114928200 -82267232 - MTD LTR MaLR -37 382 243 5 1461 19917 70 6 1 chr1 114929060 114932446 -82262986 - L1Md_F2 LINE L1 0 6582 3177 5 1461 22 99 0 0 chr1 114932582 114932653 -82262779 + AT_rich Low_complexity Low_complexity 1 71 0 5 1461 764 351 40 47 chr1 114932726 114933106 -82262326 + MTE2b LTR MaLR 3 379 0 5 1461 21 36 0 0 chr1 114934776 114934804 -82260628 + AT_rich Low_complexity Low_complexity 1 28 0 5 1461 404 357 44 50 chr1 114935015 114935195 -82260237 + B4 SINE B4 108 286 -6 5 1461 489 34 0 0 chr1 114935240 114935299 -82260133 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1461 231 189 0 0 chr1 114935983 114936036 -82259396 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1461 263 122 20 0 chr1 114936119 114936168 -82259264 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1461 1250 83 0 11 chr1 114936174 114936356 -82259076 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1461 758 339 65 4 chr1 114936434 114936695 -82258737 + B4A SINE B4 6 282 -10 6 1461 639 357 24 0 chr1 114937097 114937375 -82258057 + ORR1E LTR MaLR 1 309 -70 6 1461 585 205 0 0 chr1 114937781 114937908 -82257524 + (TA)n Simple_repeat Simple_repeat 1 127 0 6 1461 552 227 113 0 chr1 114937978 114938119 -82257313 - URR1A DNA MER1_type -3 223 67 6 1461 409 355 133 23 chr1 114938333 114938633 -82256799 - MLT1A0 LTR MaLR -22 343 11 6 1461 855 310 147 15 chr1 114939164 114939505 -82255927 + MTD LTR MaLR 26 411 -8 6 1461 914 287 29 71 chr1 114940493 114940840 -82254592 + MTEa LTR MaLR 1 330 -40 6 1461 212 0 36 0 chr1 114940854 114940882 -82254550 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1461 1055 134 5 27 chr1 114941480 114941664 -82253768 - L1_Mus1 LINE L1 0 6567 6388 6 1461 231 167 18 53 chr1 114941685 114941742 -82253690 - B1F SINE Alu 0 149 95 6 1461 2538 212 159 12 chr1 114941745 114942499 -82252933 - L1_Mur3 LINE L1 -1668 4212 3348 6 1461 326 169 21 53 chr1 114942500 114942594 -82252838 - L1_Mur3 LINE L1 -2667 3210 3120 6 1461 324 0 0 0 chr1 114942610 114942646 -82252786 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1461 369 0 0 0 chr1 114942646 114942686 -82252746 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1461 411 21 0 0 chr1 114942690 114942738 -82252694 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1461 2805 187 2 26 chr1 114942741 114943240 -82252192 - Lx2B LINE L1 -26 6974 6488 6 1461 4157 55 6 4 chr1 114943360 114943884 -82251548 + L1Md_F2 LINE L1 6058 6582 0 6 1461 1546 217 12 18 chr1 114943949 114944278 -82251154 - Lx2B LINE L1 -504 6496 6170 6 1461 264 194 28 0 chr1 114944262 114944334 -82251098 - L1_Mur3 LINE L1 -2757 3123 3050 6 1461 289 192 51 13 chr1 114944649 114944728 -82250704 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 6 1461 2541 135 22 2 chr1 114944972 114945387 -82250045 - L1_Mus4 LINE L1 -6 6630 6208 6 1461 661 271 63 36 chr1 114946173 114946395 -82249037 - RMER15 LTR ERVL -12 563 336 6 1461 3374 159 5 51 chr1 114946411 114947644 -82247788 + L1VL4 LINE L1 213 1376 -2183 6 182 41128 5 0 0 chr1 114947643 114953826 -82241606 + L1Md_A LINE L1 24 6206 -376 6 1462 2272 12 0 0 chr1 114953826 114954084 -82241348 + L1Md_A LINE L1 6325 6582 0 6 1462 30507 86 6 7 chr1 114954253 114959458 -82235974 + L1Md_F2 LINE L1 387 5586 -297 6 1462 7827 58 1 4 chr1 114959458 114960442 -82234990 + L1Md_F2 LINE L1 5587 6567 -15 6 1462 14810 197 109 7 chr1 114960454 114965176 -82230256 + Lx2 LINE L1 1718 6660 -337 6 1462 285 29 0 0 chr1 114965189 114965223 -82230209 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 1462 208 267 0 16 chr1 114965942 114966003 -82229429 + A-rich Low_complexity Low_complexity 1 60 0 6 1462 1107 50 0 0 chr1 114967216 114967355 -82228077 + B1_Mus1 SINE Alu 10 148 0 6 1462 622 263 60 35 chr1 114968530 114968731 -82226701 - RLTR28B LTR ERVL -273 208 3 6 1462 232 326 10 0 chr1 114968743 114968841 -82226591 - Lx8 LINE L1 -403 7070 6972 6 1462 483 33 0 0 chr1 114969009 114969070 -82226362 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1462 973 111 20 14 chr1 114969116 114969262 -82226170 - B1_Mus2 SINE Alu 0 147 1 6 1462 275 362 12 0 chr1 114969364 114969444 -82225988 + RSINE1 SINE B4 60 140 -25 6 1462 219 114 0 0 chr1 114969464 114969499 -82225933 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1462 1373 212 224 0 chr1 114969563 114969907 -82225525 - MTC LTR MaLR 0 421 1 6 1462 213 343 20 0 chr1 114970999 114971098 -82224334 + GA-rich Low_complexity Low_complexity 3 103 0 6 1462 21 36 0 0 chr1 114971725 114971753 -82223679 + AT_rich Low_complexity Low_complexity 1 28 0 6 1462 266 283 9 132 chr1 114971804 114971910 -82223522 + ORR1D2 LTR MaLR 29 121 -249 6 1462 924 310 83 31 chr1 114972151 114972501 -82222931 - MTD LTR MaLR 0 419 52 6 1462 1257 260 72 9 chr1 114972716 114973061 -82222371 + ORR1B2 LTR MaLR 1 367 0 6 1462 402 345 0 11 chr1 114973061 114973240 -82222192 + (CATA)n Simple_repeat Simple_repeat 4 180 0 6 1462 1327 308 101 21 chr1 114973477 114974138 -82221294 + Lx8 LINE L1 6758 7471 -2 6 1462 455 302 40 50 chr1 114974892 114975091 -82220341 + B3A SINE B2 2 198 0 6 1462 241 192 19 0 chr1 114975828 114975880 -82219552 + RSINE1 SINE B4 74 126 -39 6 1462 309 100 0 0 chr1 114975901 114975951 -82219481 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1462 24 32 0 0 chr1 114975951 114975982 -82219450 + AT_rich Low_complexity Low_complexity 1 31 0 6 1462 258 357 184 55 chr1 114976503 114976701 -82218731 + B4A SINE B4 3 221 -71 6 1462 1163 14 21 0 chr1 114976701 114976844 -82218588 + (GAAAA)n Simple_repeat Simple_repeat 2 147 0 6 1462 243 0 0 0 chr1 114976844 114976871 -82218561 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 6 1462 843 105 0 0 chr1 114976871 114976994 -82218438 + (GAAAA)n Simple_repeat Simple_repeat 5 128 0 6 1462 258 357 184 55 chr1 114976994 114977048 -82218384 + B4A SINE B4 222 288 -4 6 1462 1263 199 4 0 chr1 114977489 114977725 -82217707 + Lx4A LINE L1 5589 5825 -1233 6 1462 500 245 10 0 chr1 114977790 114977892 -82217540 + B3A SINE B2 1 103 -95 6 1462 5954 88 4 4 chr1 114977967 114978786 -82216646 - L1_Mus2 LINE L1 -4 6562 5744 6 1462 13245 127 8 90 chr1 114978787 114979417 -82216015 - L1_Mm LINE L1 -2103 3780 3179 6 1462 490 149 22 17 chr1 114979417 114979522 -82215910 - B1_Mus1 SINE Alu -5 112 2 6 1462 13245 127 8 90 chr1 114979522 114981404 -82214028 - L1_Mm LINE L1 -2103 3178 1378 6 1462 211 132 26 0 chr1 114982775 114982813 -82212619 + A-rich Low_complexity Low_complexity 4 42 0 6 1462 312 358 80 41 chr1 114983283 114983610 -82211822 - MLT1A1 LTR MaLR -2 406 10 6 1462 180 152 0 0 chr1 114983717 114983750 -82211682 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 1462 22 80 0 0 chr1 114984127 114984177 -82211255 + AT_rich Low_complexity Low_complexity 1 50 0 6 1462 10561 140 35 10 chr1 114984893 114986695 -82208737 - RLTR22_Mur LTR ERVK 0 1848 1 6 1462 8091 54 2 3 chr1 114986904 114988606 -82206826 - L1Md_F2 LINE L1 -4 6578 4878 6 1462 386 320 49 37 chr1 114988608 114988770 -82206662 - MLT2B2 LTR ERVL -22 540 377 6 1462 304 343 10 0 chr1 114988868 114988967 -82206465 - Lx8 LINE L1 -807 6666 6567 6 1462 200 102 39 58 chr1 114988970 114989022 -82206410 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 6 1462 610 312 79 12 chr1 114989340 114989593 -82205839 - Lx8 LINE L1 -360 7113 6844 6 1462 353 348 69 69 chr1 114989668 114989915 -82205517 - MLT2B2 LTR ERVL -236 279 33 6 1462 380 396 45 30 chr1 114990359 114990557 -82204875 - B4 SINE B4 0 292 92 6 1462 501 84 0 0 chr1 114991914 114991985 -82203447 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1462 789 90 0 0 chr1 114992434 114992545 -82202887 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 6 1462 304 265 24 12 chr1 114993165 114993249 -82202183 + B4A SINE B4 2 86 -206 6 1462 223 360 73 67 chr1 114993299 114993323 -82202109 - B4 SINE B4 -112 180 16 6 1462 351 338 14 50 chr1 114993323 114993463 -82201969 - B3A SINE B2 -48 150 16 6 1462 238 289 121 0 chr1 114993531 114993614 -82201818 - B4 SINE B4 -70 222 130 6 1462 21 57 0 0 chr1 114993943 114993978 -82201454 + AT_rich Low_complexity Low_complexity 1 35 0 6 1462 474 277 44 37 chr1 114993980 114994115 -82201317 - RSINE1 SINE B4 -15 150 15 6 1462 663 13 0 0 chr1 114994162 114994238 -82201194 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1462 618 262 35 0 chr1 114994243 114994384 -82201048 - B3A SINE B2 -50 148 3 6 1462 1353 194 0 11 chr1 114994954 114995225 -82200207 + Lx2B LINE L1 6238 6505 -495 6 1462 471 281 32 89 chr1 114995225 114995288 -82200144 - RLTR10A LTR ERVK 0 411 348 6 1462 4754 37 2 0 chr1 114995288 114995855 -82199577 + L1Md_T LINE L1 6015 6582 0 6 1462 471 281 32 89 chr1 114995855 114995870 -82199562 - RLTR10A LTR ERVK -64 347 333 6 1462 239 0 32 0 chr1 114995870 114995901 -82199531 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1462 471 282 31 85 chr1 114995901 114996114 -82199318 - RLTR10A LTR ERVK -79 332 114 6 1462 2336 208 35 24 chr1 114996160 114996653 -82198779 + Lx2B LINE L1 6502 6999 -1 6 1462 629 347 79 19 chr1 114996762 114997029 -82198403 + ORR1E LTR MaLR 1 283 -76 6 1462 696 83 0 0 chr1 114997029 114997125 -82198307 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1462 456 35 0 0 chr1 114997365 114997423 -82198009 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1462 381 109 0 0 chr1 114997425 114997489 -82197943 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1462 227 329 48 24 chr1 114997538 114997622 -82197810 - Lx8 LINE L1 -189 7284 7199 6 1462 311 255 53 13 chr1 114997782 114997933 -82197499 + (CATA)n Simple_repeat Simple_repeat 4 160 0 6 1462 198 0 0 0 chr1 114998103 114998125 -82197307 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1462 405 344 56 53 chr1 114998137 114998422 -82197010 + B4 SINE B4 4 289 -3 6 1462 25 0 0 0 chr1 114999293 114999318 -82196114 + AT_rich Low_complexity Low_complexity 1 25 0 6 1462 428 306 35 74 chr1 114999358 114999587 -82195845 + B4A SINE B4 1 220 -72 6 1462 873 89 0 0 chr1 115000001 115000125 -82195307 + (CTGTG)n Simple_repeat Simple_repeat 4 127 0 1 1462 587 335 80 65 chr1 115000129 115000515 -82194917 + MER74A LTR ERVL 1 392 -166 2 1462 1077 294 57 48 chr1 115001073 115001549 -82193883 + RMER5 LTR ERV1 35 514 -20 3 1462 183 80 0 0 chr1 115001952 115001977 -82193455 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 4 1462 493 328 30 0 chr1 115002014 115002148 -82193284 - B3A SINE B2 -59 139 2 5 1462 423 0 0 0 chr1 115002247 115002294 -82193138 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1462 576 269 117 67 chr1 115002668 115002834 -82192598 - RLTR22_Mus LTR ERVK -245 1563 1425 7 1462 206 62 31 0 chr1 115002834 115002866 -82192566 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1462 576 274 120 72 chr1 115002866 115003063 -82192369 - RLTR22_Mus LTR ERVK -384 1424 1263 7 1462 357 24 0 0 chr1 115003063 115003105 -82192327 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1462 526 300 131 98 chr1 115003105 115003128 -82192304 - RLTR22_Mus LTR ERVK -555 767 745 7 1462 209 288 6 0 chr1 115003326 115003496 -82191936 + (CA)n Simple_repeat Simple_repeat 1 171 0 1 1462 465 224 0 0 chr1 115003508 115003669 -82191763 + (CA)n Simple_repeat Simple_repeat 2 162 0 1 1462 35 41 0 0 chr1 115005342 115005391 -82190041 + AT_rich Low_complexity Low_complexity 1 49 0 1 1462 544 339 130 25 chr1 115005977 115006216 -82189216 - B4A SINE B4 -4 288 25 1 1462 328 247 27 54 chr1 115006221 115006405 -82189027 + RMER17C LTR ERVK 97 275 -135 1 1462 239 130 65 0 chr1 115007165 115007211 -82188221 + MT2B LTR ERVL 188 236 -365 1 1462 287 29 26 5 chr1 115007170 115007216 -82188216 + B1_Mus2 SINE Alu 38 83 -37 1 1462 630 140 0 0 chr1 115007222 115007336 -82188096 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1462 226 303 90 0 chr1 115007597 115007686 -82187746 + MTE2a LTR MaLR 1 97 -282 1 1462 412 294 113 4 chr1 115007771 115007935 -82187497 + MTE2a LTR MaLR 229 407 -14 1 1462 555 297 124 5 chr1 115008490 115008676 -82186756 + B4 SINE B4 3 210 -82 1 1462 884 131 22 17 chr1 115008717 115008896 -82186536 + GA-rich Low_complexity Low_complexity 1 180 0 1 1462 731 350 8 28 chr1 115009888 115010135 -82185297 + B4 SINE B4 49 290 -2 2 1462 582 15 0 0 chr1 115010156 115010223 -82185209 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1462 262 182 44 33 chr1 115011296 115011387 -82184045 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 2 1462 441 0 0 0 chr1 115011390 115011439 -82183993 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1462 5863 137 53 16 chr1 115011753 115012740 -82182692 - RLTR13D5 LTR ERVK 0 1023 1 2 1462 3693 173 21 45 chr1 115012963 115014354 -82181078 + L1_Mur2 LINE L1 569 1918 -3959 2 1462 3923 185 8 4 chr1 115014355 115014373 -82181059 - Lx LINE L1 0 6654 6637 2 1462 516 16 0 0 chr1 115014373 115014434 -82180998 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1462 3923 185 8 4 chr1 115014434 115015163 -82180269 - Lx LINE L1 -18 6636 5905 2 1462 2015 137 30 15 chr1 115015163 115015562 -82179870 + L1_Mur2 LINE L1 3281 3685 -2192 2 1462 2990 206 75 11 chr1 115015561 115016214 -82179218 + Lx4A LINE L1 6364 7058 0 2 1462 23 0 0 0 chr1 115016214 115016237 -82179195 + AT_rich Low_complexity Low_complexity 1 23 0 2 1462 1137 263 83 6 chr1 115016580 115016894 -82178538 - ORR1B1 LTR MaLR -4 390 53 3 1462 750 288 33 0 chr1 115016919 115017131 -82178301 - ID_B1 SINE B4 -3 221 3 3 1462 213 263 0 0 chr1 115017449 115017506 -82177926 + MIRb SINE MIR 186 242 -26 3 1462 528 304 74 0 chr1 115017541 115017689 -82177743 + B3A SINE B2 2 160 -38 3 1462 1273 106 0 6 chr1 115018246 115018427 -82177005 - B2_Mm2 SINE B2 -14 181 2 3 1462 261 288 69 81 chr1 115018848 115018935 -82176497 - B4A SINE B4 0 292 207 3 1462 467 286 28 62 chr1 115019407 115019586 -82175846 + B3A SINE B2 13 185 -13 3 1462 245 236 36 0 chr1 115019679 115019734 -82175698 - ORR1B1 LTR MaLR -352 69 13 3 1462 612 279 7 0 chr1 115019913 115020049 -82175383 - RSINE1 SINE B4 -18 147 11 3 1462 23 92 0 0 chr1 115020539 115020604 -82174828 + AT_rich Low_complexity Low_complexity 1 65 0 3 1462 573 298 10 87 chr1 115020614 115020820 -82174612 + B3A SINE B2 1 190 -8 3 1462 453 303 82 0 chr1 115021853 115021975 -82173457 + RSINE1 SINE B4 11 142 -23 4 1462 1209 117 19 5 chr1 115022039 115022245 -82173187 - L1_Mus3 LINE L1 -7 6631 6423 4 1462 546 29 0 0 chr1 115022400 115022468 -82172964 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1462 620 259 74 0 chr1 115022472 115022607 -82172825 - RSINE1 SINE B4 -17 148 4 4 1462 31 0 0 0 chr1 115022848 115022879 -82172553 + AT_rich Low_complexity Low_complexity 1 31 0 4 1462 5517 231 54 11 chr1 115022931 115024571 -82170861 - Lx5 LINE L1 -77 6973 5265 4 1462 357 210 0 21 chr1 115024799 115024940 -82170492 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 1462 249 119 0 0 chr1 115024939 115024981 -82170451 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1462 616 308 45 5 chr1 115025026 115025248 -82170184 - B4 SINE B4 -51 241 11 4 1462 249 288 61 0 chr1 115025828 115025894 -82169538 - B4 SINE B4 -218 74 5 4 1462 335 311 110 18 chr1 115026053 115026217 -82169215 - L1M4 LINE L1 -846 5300 5122 5 1462 21 0 0 0 chr1 115026286 115026307 -82169125 + AT_rich Low_complexity Low_complexity 1 21 0 5 1462 482 369 21 48 chr1 115026423 115026611 -82168821 + B3A SINE B2 1 183 -15 5 1462 3515 5 8 0 chr1 115026647 115027040 -82168392 + MTA_Mm LTR MaLR 1 396 0 5 1462 334 279 109 104 chr1 115027161 115027353 -82168079 - B3A SINE B2 0 195 3 5 1462 760 265 99 83 chr1 115027741 115027973 -82167459 - L1M4 LINE L1 -1898 4248 3985 5 1462 186 43 0 0 chr1 115027973 115027996 -82167436 + (CATTT)n Simple_repeat Simple_repeat 2 24 0 5 1462 760 265 99 83 chr1 115027996 115028340 -82167092 - L1M4 LINE L1 -2162 3984 3663 5 1462 3583 178 0 8 chr1 115028312 115029043 -82166389 - Lx2 LINE L1 -1063 5934 5222 5 1462 2316 172 28 12 chr1 115029045 115029474 -82165958 + RLTR26 LTR ERVK 1 436 -206 5 1462 1124 173 32 14 chr1 115029475 115029692 -82165740 - Lx2 LINE L1 -740 5137 4917 5 1462 511 257 132 0 chr1 115029697 115029849 -82165583 + MTD LTR MaLR 248 419 0 5 1462 330 258 164 67 chr1 115030210 115030405 -82165027 - MTD LTR MaLR 0 419 206 5 1462 414 252 239 33 chr1 115031141 115031354 -82164078 - MTE2b LTR MaLR -117 262 6 6 1462 661 352 43 39 chr1 115031812 115032093 -82163339 + B4 SINE B4 11 292 0 6 1462 288 91 0 0 chr1 115032537 115032581 -82162851 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1462 267 316 39 37 chr1 115032581 115032821 -82162611 - L1MA6 LINE L1 -398 5905 5662 6 1462 520 310 39 62 chr1 115033784 115034048 -82161384 - B4A SINE B4 -19 273 10 6 1462 2128 47 0 0 chr1 115034048 115034306 -82161126 - L1Md_T LINE L1 0 6582 6325 6 1462 977 220 9 30 chr1 115034839 115035069 -82160363 + URR1B DNA MER1_type 1 225 0 6 1462 700 319 67 3 chr1 115035183 115035526 -82159906 - L1MA7 LINE L1 -314 5977 5613 6 1462 262 337 48 6 chr1 115035650 115035817 -82159615 - L1MA7 LINE L1 -685 5606 5433 6 1462 567 301 49 60 chr1 115035867 115036051 -82159381 - B3A SINE B2 -16 182 1 6 1462 273 266 64 0 chr1 115036154 115036263 -82159169 - L1MA7 LINE L1 -841 5302 5187 6 1462 457 275 89 32 chr1 115036346 115036594 -82158838 - L1MA7 LINE L1 -1086 5057 4796 6 1462 231 119 24 0 chr1 115036878 115036920 -82158512 - L1MC1 LINE L1 -12 6321 6279 6 1462 389 354 15 25 chr1 115037442 115037642 -82157790 - Charlie13b DNA Charlie -173 339 142 7 1462 285 374 104 20 chr1 115037891 115038142 -82157290 + B4 SINE B4 3 274 -18 7 1462 336 24 0 0 chr1 115038162 115038203 -82157229 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1462 207 0 0 0 chr1 115038462 115038485 -82156947 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1462 22 70 0 0 chr1 115038605 115038648 -82156784 + AT_rich Low_complexity Low_complexity 1 43 0 7 1462 25 0 0 0 chr1 115039131 115039156 -82156276 + AT_rich Low_complexity Low_complexity 1 25 0 7 1462 3448 96 4 0 chr1 115039156 115039624 -82155808 - L1_Mus1 LINE L1 -10 6557 6088 7 1462 2930 73 35 0 chr1 115039624 115040021 -82155411 + L1_Mus1 LINE L1 5626 6036 -531 7 1462 255 31 0 0 chr1 115040035 115040067 -82155365 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1462 1140 124 0 0 chr1 115040124 115040302 -82155130 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7 1462 4905 51 5 0 chr1 115040307 115040912 -82154520 - L1Md_F2 LINE L1 -14 6568 5961 7 1462 591 15 0 0 chr1 115040912 115040980 -82154452 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 8 1462 1094 126 16 5 chr1 115041008 115041192 -82154240 - L1_Mus3 LINE L1 0 6638 6453 8 1462 284 389 21 59 chr1 115041213 115041399 -82154033 - B4A SINE B4 -113 179 1 8 1462 3612 95 2 17 chr1 115041515 115041751 -82153681 - L1_Mus2 LINE L1 -2 6564 6335 8 1462 2956 34 72 13 chr1 115041751 115042139 -82153293 + IAPLTR2a LTR ERVK 1 411 0 8 1462 3612 95 2 17 chr1 115042139 115042427 -82153005 - L1_Mus2 LINE L1 -232 6334 6048 8 1462 722 316 39 17 chr1 115042669 115042726 -82152706 + B4 SINE B4 22 79 -213 8 1462 249 42 20 41 chr1 115042726 115042775 -82152657 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 8 1462 722 316 39 17 chr1 115042775 115042949 -82152483 + B4 SINE B4 80 257 -35 8 1462 414 0 0 0 chr1 115042963 115043009 -82152423 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1462 691 112 17 0 chr1 115043009 115043125 -82152307 + (GA)n Simple_repeat Simple_repeat 1 118 0 8 1462 226 345 0 0 chr1 115043230 115043288 -82152144 + MTD LTR MaLR 66 123 -296 8 1462 1518 268 68 10 chr1 115043294 115043690 -82151742 - MTD LTR MaLR 0 419 1 9 1462 534 227 181 16 chr1 115043958 115044146 -82151286 + MTD LTR MaLR 196 414 -5 8 1462 942 158 83 47 chr1 115044148 115044341 -82151091 - ORR1A1 LTR MaLR -8 338 139 9 1462 381 353 21 21 chr1 115044406 115044600 -82150832 + MTD-int LTR MaLR 7 200 -1058 8 1462 7652 156 16 14 chr1 115044606 115045940 -82149492 + Lx2 LINE L1 5658 6995 -2 9 1462 387 0 0 0 chr1 115045996 115046039 -82149393 + (GGGGA)n Simple_repeat Simple_repeat 3 45 0 9 1462 1448 28 6 0 chr1 115046039 115046216 -82149216 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 9 1462 789 11 0 0 chr1 115046218 115046308 -82149124 + (GGAAA)n Simple_repeat Simple_repeat 1 90 0 9 1462 246 250 124 9 chr1 115046335 115046448 -82148984 + MTD-int LTR MaLR 1087 1212 -46 8 1462 186 103 0 0 chr1 115046887 115046916 -82148516 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 1462 1267 138 125 12 chr1 115047323 115047579 -82147853 + Lx4B LINE L1 6764 7048 -10 9 1462 682 296 61 10 chr1 115047598 115047796 -82147636 + B4 SINE B4 81 288 -4 9 1462 206 217 0 0 chr1 115047946 115047992 -82147440 + CT-rich Low_complexity Low_complexity 2 47 0 9 1462 870 304 136 33 chr1 115048051 115048412 -82147020 - MTD LTR MaLR 0 419 22 1 1462 373 293 0 0 chr1 115048445 115048547 -82146885 + B1F2 SINE Alu 17 118 -2 1 1462 466 388 57 12 chr1 115048757 115049005 -82146427 + B4A SINE B4 32 290 -2 1 1462 194 176 0 19 chr1 115049007 115049059 -82146373 + (CATA)n Simple_repeat Simple_repeat 1 51 0 1 1462 240 59 0 0 chr1 115049177 115049211 -82146221 + (TAAG)n Simple_repeat Simple_repeat 2 35 0 1 1462 5326 119 22 12 chr1 115049211 115050033 -82145399 - Lx3_Mus LINE L1 -16 6993 6164 1 1462 203 229 0 0 chr1 115050448 115050483 -82144949 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1462 250 263 83 23 chr1 115050880 115051013 -82144419 + L1MA5 LINE L1 5795 5924 -376 1 1462 502 332 80 38 chr1 115051229 115051467 -82143965 + B4A SINE B4 39 286 -6 1 1462 243 0 0 0 chr1 115051560 115051587 -82143845 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1462 351 0 0 0 chr1 115051587 115051625 -82143807 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1462 271 296 49 24 chr1 115051643 115051748 -82143684 - MIRc SINE MIR -121 147 30 1 1462 3834 244 45 41 chr1 115051899 115052946 -82142486 - Lx5 LINE L1 -77 6973 5923 1 1462 50 18 0 0 chr1 115053052 115053109 -82142323 + AT_rich Low_complexity Low_complexity 1 57 0 1 1462 303 28 0 0 chr1 115053702 115053738 -82141694 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1462 396 0 0 0 chr1 115054211 115054255 -82141177 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1462 290 341 87 0 chr1 115054257 115054383 -82141049 + ID_B1 SINE B4 87 223 -1 1 1462 474 313 82 9 chr1 115054458 115054677 -82140755 - L1P5 LINE L1 -563 5593 5359 1 1462 488 317 42 69 chr1 115054677 115054894 -82140538 - B3A SINE B2 -5 211 1 1 1462 338 275 79 5 chr1 115054952 115055116 -82140316 + L1M2 LINE L1 5638 5812 -488 1 1462 29 28 0 0 chr1 115055243 115055279 -82140153 + AT_rich Low_complexity Low_complexity 1 36 0 1 1462 2787 89 5 10 chr1 115055626 115056023 -82139409 + L1_Mus3 LINE L1 6244 6638 0 1 1462 597 375 25 18 chr1 115056050 115056332 -82139100 + B4 SINE B4 1 284 -8 1 1462 189 74 0 0 chr1 115056992 115057019 -82138413 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1462 334 247 0 0 chr1 115057470 115057543 -82137889 + BC1_Mm scRNA scRNA 10 82 -70 1 1462 300 53 0 0 chr1 115057544 115057582 -82137850 + (GGA)n Simple_repeat Simple_repeat 2 39 0 1 1462 722 141 0 49 chr1 115058853 115058995 -82136437 + L1_Mus2 LINE L1 6418 6552 -14 1 1462 396 0 0 0 chr1 115059615 115059659 -82135773 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1462 582 306 21 16 chr1 115062310 115062496 -82132936 - MTD LTR MaLR -232 187 1 1 1462 511 324 52 52 chr1 115062496 115062777 -82132655 - MER34A LTR ERV1 -290 281 1 1 1462 219 69 0 0 chr1 115063180 115063209 -82132223 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1 1462 363 23 0 0 chr1 115063210 115063254 -82132178 + (TAG)n Simple_repeat Simple_repeat 1 44 0 1 1462 314 43 43 0 chr1 115063508 115063555 -82131877 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1462 8103 31 18 0 chr1 115064421 115065413 -82130019 - L1_Mm LINE L1 -2755 3128 2119 1 1462 4223 77 0 0 chr1 115065413 115065956 -82129476 + L1Md_T LINE L1 6039 6581 -1 1 1462 442 365 106 22 chr1 115065995 115066222 -82129210 + B4A SINE B4 24 269 -23 1 1462 438 53 0 0 chr1 115066222 115066279 -82129153 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1462 214 345 36 0 chr1 115066699 115066783 -82128649 + B4A SINE B4 1 87 -205 1 1462 516 116 0 0 chr1 115066877 115066963 -82128469 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1462 263 173 27 0 chr1 115066964 115067039 -82128393 + (CAGAGA)n Simple_repeat Simple_repeat 3 79 0 1 1462 225 279 0 11 chr1 115067040 115067127 -82128305 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1462 629 88 0 10 chr1 115067142 115067245 -82128187 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 1462 444 235 48 12 chr1 115067247 115067415 -82128017 + (CAGAGA)n Simple_repeat Simple_repeat 6 179 0 1 1462 981 265 41 88 chr1 115067955 115068274 -82127158 + ORR1D1 LTR MaLR 3 306 -68 1 1462 304 22 44 0 chr1 115068295 115068340 -82127092 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1462 264 59 0 0 chr1 115068355 115068389 -82127043 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1462 667 104 0 17 chr1 115068449 115068566 -82126866 - L1_Mus2 LINE L1 -2 6564 6450 1 1462 245 139 47 0 chr1 115068566 115068609 -82126823 + ORR1D1 LTR MaLR 340 384 0 1 1462 8432 29 0 0 chr1 115068797 115069867 -82125565 - L1Md_A LINE L1 0 6582 5513 1 1462 608 351 32 24 chr1 115069987 115070238 -82125194 + B4A SINE B4 40 292 0 1 1462 216 271 14 28 chr1 115070239 115070311 -82125121 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 1 1462 593 320 5 32 chr1 115070325 115070512 -82124920 + RMER30 DNA MER1_type 7 188 -14 1 1462 387 277 80 0 chr1 115070631 115070768 -82124664 + MER44D DNA MER2_type 1 148 -557 1 1462 258 229 115 0 chr1 115071091 115071152 -82124280 + B4A SINE B4 18 85 -207 1 1462 240 291 47 101 chr1 115071193 115071342 -82124090 + B4A SINE B4 152 292 0 1 1462 7312 68 16 0 chr1 115071393 115072330 -82123102 + L1_Mus1 LINE L1 5616 6567 0 1 1462 675 25 0 0 chr1 115072335 115072416 -82123016 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 1 1462 1048 41 0 0 chr1 115072475 115072597 -82122835 - L1_Mus1 LINE L1 -140 6427 6306 1 1462 199 54 26 26 chr1 115072655 115072693 -82122739 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1462 859 304 56 9 chr1 115072914 115073146 -82122286 + B4 SINE B4 48 290 -2 1 1462 644 246 23 23 chr1 115073893 115074064 -82121368 - B4A SINE B4 -118 174 4 1 1462 1157 288 189 19 chr1 115074433 115074902 -82120530 + Lx8 LINE L1 6923 7471 -2 1 1462 296 338 0 0 chr1 115075888 115075968 -82119464 - B4 SINE B4 -206 86 7 1 1462 901 260 34 17 chr1 115076395 115076630 -82118802 - RMER15 LTR ERVL 0 575 337 1 1462 1216 307 79 18 chr1 115076712 115077207 -82118225 - Lx8 LINE L1 -611 6862 6338 1 1462 799 311 85 2 chr1 115077210 115077479 -82117953 + MTD LTR MaLR 105 405 -14 1 1462 27 0 0 0 chr1 115077681 115077708 -82117724 + AT_rich Low_complexity Low_complexity 1 27 0 1 1462 538 384 30 49 chr1 115078052 115078318 -82117114 + B4A SINE B4 9 269 -23 1 1462 474 18 0 0 chr1 115078330 115078385 -82117047 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1462 581 72 0 12 chr1 115078838 115078922 -82116510 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 1 1462 264 30 0 0 chr1 115079843 115079876 -82115556 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1462 691 341 21 50 chr1 115079937 115080274 -82115158 - MTE-int LTR MaLR -1216 364 38 1 182 39004 33 2 7 chr1 115080395 115086588 -82108844 - L1Md_T LINE L1 -1 6581 422 1 1463 228 86 0 0 chr1 115086630 115086665 -82108767 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1463 1984 170 15 15 chr1 115087013 115087402 -82108030 + MYSERV6-int LTR ERVK 8569 8957 -2 1 1463 713 269 78 86 chr1 115087415 115087798 -82107634 + RMER6B LTR ERVK 3 382 -79 1 1463 549 174 119 162 chr1 115087771 115087956 -82107476 - RMER6B LTR ERVK -282 179 3 1 1463 288 53 0 0 chr1 115088154 115088192 -82107240 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1463 351 0 0 0 chr1 115088192 115088230 -82107202 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1463 344 245 197 5 chr1 115089245 115089321 -82106111 - RCHARR1 DNA MER1_type 0 974 871 1 1463 2117 90 7 0 chr1 115089321 115089621 -82105811 - L1_Mus2 LINE L1 -3 6563 6262 1 1463 344 245 197 5 chr1 115089621 115089757 -82105675 - RCHARR1 DNA MER1_type -104 870 722 1 1463 214 358 0 43 chr1 115089754 115089824 -82105608 + B1_Mus1 SINE Alu 11 77 -71 1 1463 186 143 0 0 chr1 115089843 115089878 -82105554 + (TGG)n Simple_repeat Simple_repeat 3 37 0 1 1463 542 138 111 8 chr1 115089891 115090008 -82105424 + RMER1B Other Other 934 1062 -4 1 1463 414 57 0 0 chr1 115090324 115090377 -82105055 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1 1463 1034 84 13 0 chr1 115090384 115090538 -82104894 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 1 1463 801 291 11 80 chr1 115090637 115090913 -82104519 - MTE2a LTR MaLR 0 379 123 1 1463 238 98 39 0 chr1 115090934 115090985 -82104447 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1 1463 486 0 0 0 chr1 115090986 115091040 -82104392 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1463 249 33 0 0 chr1 115091081 115091111 -82104321 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1463 534 301 85 17 chr1 115091153 115091329 -82104103 + ID_B1 SINE B4 29 216 -8 1 1463 423 289 74 0 chr1 115092196 115092345 -82103087 - L1MA6 LINE L1 -201 6099 5940 1 1463 3961 220 41 9 chr1 115092371 115093278 -82102154 - Lx2B LINE L1 -2 6998 6063 1 1463 413 290 27 20 chr1 115093287 115093487 -82101945 - L1MA6 LINE L1 -252 5919 5716 1 1463 240 41 82 0 chr1 115093487 115093536 -82101896 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1463 1106 82 7 0 chr1 115093539 115093685 -82101747 - B1_Mm SINE Alu 0 147 1 1 1463 233 347 81 95 chr1 115093795 115094005 -82101427 + B4A SINE B4 43 249 -43 1 1463 183 42 0 0 chr1 115094021 115094045 -82101387 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1463 937 299 35 85 chr1 115094161 115094527 -82100905 + MTE2a LTR MaLR 8 355 -24 1 1463 533 302 72 11 chr1 115094532 115094713 -82100719 - RMER15 LTR ERVL -109 466 275 1 1463 965 95 0 0 chr1 115094798 115094935 -82100497 - B1_Mus1 SINE Alu -5 143 7 1 1463 355 340 117 22 chr1 115095388 115095662 -82099770 + L1M4 LINE L1 4697 4996 -1150 1 1463 321 344 80 55 chr1 115095694 115095931 -82099501 + B4 SINE B4 50 292 0 1 1463 414 288 60 31 chr1 115095931 115096250 -82099182 + L1M4 LINE L1 5044 5371 -775 1 1463 955 310 57 57 chr1 115096321 115096673 -82098759 + ORR1E LTR MaLR 6 357 -2 1 1463 463 299 8 30 chr1 115096815 115096946 -82098486 + B4 SINE B4 2 129 -163 2 1463 285 306 88 27 chr1 115097307 115097569 -82097863 + L1M5 LINE L1 2646 2923 -3223 2 1463 223 305 34 0 chr1 115097916 115097975 -82097457 - B4A SINE B4 -199 93 33 2 1463 6675 110 21 0 chr1 115098005 115098960 -82096472 - L1_Mus4 LINE L1 -75 6561 5587 2 1463 233 359 75 21 chr1 115099458 115099646 -82095786 - RMER15 LTR ERVL -158 417 220 2 1463 309 323 40 10 chr1 115099930 115100030 -82095402 - PB1D10 SINE Alu -3 114 12 2 1463 2356 183 73 0 chr1 115100507 115100600 -82094832 + RLTR19 LTR ERVK 1 94 -405 2 1463 429 20 0 0 chr1 115100600 115100650 -82094782 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1463 2356 183 73 0 chr1 115100650 115101021 -82094411 + RLTR19 LTR ERVK 95 497 -2 2 1463 2426 81 103 3 chr1 115101874 115102232 -82093200 - L1_Mus2 LINE L1 0 6566 6173 2 1463 1431 94 0 0 chr1 115102261 115102452 -82092980 - L1_Mus1 LINE L1 -59 6508 6318 2 1463 1546 173 59 15 chr1 115102452 115102792 -82092640 - RLTR31_Mm LTR ERVK -205 356 2 2 1463 316 223 129 35 chr1 115103105 115103221 -82092211 - MTC LTR MaLR -8 413 287 2 1463 250 301 80 51 chr1 115103263 115103438 -82091994 - MTC LTR MaLR -241 180 1 2 1463 31 0 0 0 chr1 115103468 115103499 -82091933 + AT_rich Low_complexity Low_complexity 1 31 0 2 1463 21 36 0 0 chr1 115103577 115103605 -82091827 + AT_rich Low_complexity Low_complexity 1 28 0 2 1463 4294 76 33 0 chr1 115103640 115104220 -82091212 + L1Md_F2 LINE L1 4988 5586 -297 2 1463 7441 72 6 16 chr1 115104221 115105222 -82090210 + L1Md_F2 LINE L1 5588 6578 -4 2 1463 1306 241 42 31 chr1 115105985 115106344 -82089088 - RLTR20C LTR ERVK -168 366 4 2 1463 1801 167 0 33 chr1 115106583 115106912 -82088520 - ORR1A3 LTR MaLR -8 318 1 2 1463 367 293 138 69 chr1 115106958 115107262 -82088170 + L1_Mur3 LINE L1 3464 3782 -2098 2 1463 2287 162 74 15 chr1 115107262 115107668 -82087764 - RLTR23 LTR ERV1 0 430 1 2 1463 367 293 138 69 chr1 115107668 115107901 -82087531 + L1_Mur3 LINE L1 3783 4038 -1842 2 1463 33 0 0 0 chr1 115108100 115108133 -82087299 + AT_rich Low_complexity Low_complexity 1 33 0 2 1463 1311 317 5 21 chr1 115108251 115108634 -82086798 - Lx5 LINE L1 -22 7028 6652 2 1463 223 398 11 11 chr1 115109182 115109276 -82086156 - PB1D10 SINE Alu -23 94 1 2 1463 228 250 54 0 chr1 115111222 115111278 -82084154 - Lx8 LINE L1 -829 6644 6586 2 1463 350 299 20 20 chr1 115111285 115111384 -82084048 - B4 SINE B4 -192 100 2 2 1463 249 98 0 0 chr1 115111418 115111459 -82083973 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1463 788 281 107 23 chr1 115112985 115113331 -82082101 + MTEb LTR MaLR 1 375 -4 2 1463 500 328 15 0 chr1 115113580 115113714 -82081718 - B4A SINE B4 -143 149 14 2 1463 723 322 45 34 chr1 115114016 115114283 -82081149 - B4A SINE B4 -21 271 2 2 1463 682 343 25 11 chr1 115114990 115115270 -82080162 + B4A SINE B4 3 286 -6 2 1463 343 361 12 87 chr1 115115942 115116103 -82079329 - B4A SINE B4 -119 173 25 2 1463 31 0 0 0 chr1 115116132 115116163 -82079269 + AT_rich Low_complexity Low_complexity 1 31 0 2 1463 307 301 196 12 chr1 115116173 115116341 -82079091 - B3 SINE B2 -15 201 3 2 1463 495 358 30 44 chr1 115116676 115117015 -82078417 - MER89 LTR ERV1 -2 557 224 2 1463 570 269 124 16 chr1 115117412 115117569 -82077863 + B3 SINE B2 2 167 -49 2 1463 462 36 0 0 chr1 115117569 115117625 -82077807 + (CATA)n Simple_repeat Simple_repeat 4 59 0 2 1463 570 269 124 16 chr1 115117625 115117652 -82077780 + B3 SINE B2 168 205 -11 2 1463 466 323 56 0 chr1 115117789 115117950 -82077482 + MTE2b LTR MaLR 210 379 0 2 1463 952 326 56 28 chr1 115117950 115118345 -82077087 + MTE2b-int LTR MaLR 1 406 -1174 2 1463 681 311 142 10 chr1 115118388 115118677 -82076755 + MTE2b-int LTR MaLR 553 879 -701 2 1463 467 317 122 70 chr1 115118700 115119012 -82076420 - ORR1D2 LTR MaLR -3 367 40 2 1463 1855 196 109 5 chr1 115119014 115119419 -82076013 + RMER19B LTR ERVK 444 890 -12 2 1463 256 335 51 0 chr1 115119467 115119625 -82075807 - MER89-int LTR ERV1 -6482 319 154 2 1463 698 301 96 79 chr1 115119761 115120114 -82075318 + MTEa LTR MaLR 18 376 -3 2 1463 597 231 35 0 chr1 115120228 115120401 -82075031 - L1_Mur3 LINE L1 -2063 3817 3639 2 1463 444 331 39 39 chr1 115120624 115120778 -82074654 + RSINE1 SINE B4 12 165 0 2 1463 258 300 0 0 chr1 115120779 115120849 -82074583 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1463 228 268 28 0 chr1 115121498 115121569 -82073863 - MIR SINE MIR -10 252 180 2 1463 239 369 18 9 chr1 115121754 115121866 -82073566 + MTEa LTR MaLR 65 177 -202 2 1463 358 333 97 53 chr1 115121871 115122077 -82073355 + B3 SINE B2 1 215 -1 2 1463 299 344 107 0 chr1 115122199 115122330 -82073102 + ID_B1 SINE B4 2 146 -78 2 1463 265 324 166 18 chr1 115122515 115122732 -82072700 + RLTR24 LTR ERV1 279 527 -2 2 1463 324 275 53 35 chr1 115122732 115122825 -82072607 + ID_B1 SINE B4 130 224 0 2 1463 237 43 64 0 chr1 115122851 115122898 -82072534 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 1463 22 0 0 0 chr1 115123048 115123070 -82072362 + AT_rich Low_complexity Low_complexity 1 22 0 2 1463 321 337 0 0 chr1 115123536 115123619 -82071813 + B3A SINE B2 1 83 -115 2 1463 198 0 0 0 chr1 115123634 115123656 -82071776 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1463 1126 25 32 0 chr1 115123691 115123849 -82071583 + (TC)n Simple_repeat Simple_repeat 2 164 0 2 1463 234 0 0 0 chr1 115123902 115123928 -82071504 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 2 1463 334 293 0 0 chr1 115123928 115124010 -82071422 - B4 SINE B4 -209 83 2 2 1463 1297 83 0 22 chr1 115124645 115124829 -82070603 + B2_Mm2 SINE B2 2 181 -14 2 1463 5504 39 24 0 chr1 115124829 115125495 -82069937 + L1Md_F2 LINE L1 5888 6569 -13 2 1463 205 191 0 0 chr1 115125498 115125540 -82069892 + A-rich Low_complexity Low_complexity 1 42 0 2 1463 478 118 21 0 chr1 115125752 115125845 -82069587 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 2 1463 1120 233 55 52 chr1 115126309 115126392 -82069040 - RMER19C LTR ERVK 0 611 523 2 1463 5835 128 35 6 chr1 115126392 115127342 -82068090 + Lx3_Mus LINE L1 6033 7009 0 2 1463 1120 233 55 52 chr1 115127342 115127566 -82067866 - RMER19C LTR ERVK -89 522 303 2 1463 1326 256 6 18 chr1 115127567 115127897 -82067535 - Lx7 LINE L1 -308 7388 7063 2 1463 228 122 0 0 chr1 115128549 115128590 -82066842 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1463 338 309 47 62 chr1 115128687 115128879 -82066553 + B4 SINE B4 30 233 -59 2 1463 1168 232 46 58 chr1 115128887 115129450 -82065982 + L1VL4 LINE L1 336 871 -5464 2 1463 20200 196 17 46 chr1 115129453 115132892 -82062540 + Lx2A LINE L1 1232 4641 -1245 2 1463 186 43 0 0 chr1 115132892 115132915 -82062517 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1463 20200 196 17 46 chr1 115132915 115132946 -82062486 + Lx2A LINE L1 4642 4672 -1214 2 1463 1244 89 0 6 chr1 115132946 115133127 -82062305 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1463 20200 196 17 46 chr1 115133127 115133918 -82061514 + Lx2A LINE L1 4673 5373 -513 2 1463 294 29 0 0 chr1 115133918 115133953 -82061479 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1463 20200 148 31 58 chr1 115133953 115135595 -82059837 + Lx2A LINE L1 5374 6967 -41 2 1463 359 131 14 14 chr1 115135595 115135665 -82059767 + Lx2A LINE L1 6924 6993 -15 2 1463 446 0 0 18 chr1 115135665 115135720 -82059712 + (TAA)n Simple_repeat Simple_repeat 1 54 0 2 1463 215 310 20 10 chr1 115137279 115137380 -82058052 + CT-rich Low_complexity Low_complexity 3 104 0 2 1463 648 302 111 13 chr1 115137885 115138120 -82057312 - RMER15 LTR ERVL -45 530 273 2 1463 504 305 42 33 chr1 115138168 115138409 -82057023 + L1MEg LINE L1 703 945 -5139 2 1463 3670 115 0 0 chr1 115138838 115139367 -82056065 + L1_Mus2 LINE L1 6037 6565 -1 2 1463 321 365 34 17 chr1 115139602 115139839 -82055593 + Lx9 LINE L1 7187 7427 -217 2 1463 441 0 0 0 chr1 115139867 115139916 -82055516 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1463 4287 98 12 93 chr1 115140003 115140817 -82054615 - RMER17A LTR ERVK -3 748 1 2 1463 663 328 16 5 chr1 115141366 115141550 -82053882 + ID_B1 SINE B4 33 218 -6 2 1463 24 0 0 0 chr1 115141682 115141706 -82053726 + AT_rich Low_complexity Low_complexity 1 24 0 2 1463 1301 270 41 62 chr1 115142154 115142620 -82052812 - Lx6 LINE L1 -25 7435 6980 2 1463 300 304 43 141 chr1 115143202 115143436 -82051996 + B4A SINE B4 1 211 -81 2 1463 209 329 13 0 chr1 115143450 115143529 -82051903 + L2b LINE L2 3296 3375 0 2 1463 643 154 9 0 chr1 115143598 115143708 -82051724 + L1VL2 LINE L1 285 395 -5940 2 1463 4603 180 54 41 chr1 115143698 115143800 -82051632 + L1VL2 LINE L1 25 122 -6213 2 1463 2303 181 36 44 chr1 115143800 115144250 -82051182 + RLTR41 LTR ERV1 1 446 0 2 1463 5510 146 72 27 chr1 115144250 115146039 -82049393 + L1VL2 LINE L1 123 1994 -1621 2 1463 5897 211 60 42 chr1 115146040 115147745 -82047687 + RMER3D-int LTR ERVK 1103 2837 -5 2 1463 3138 197 29 7 chr1 115147773 115148355 -82047077 + RLTR17 LTR ERVK 98 692 0 2 1463 3144 178 75 1 chr1 115148355 115149031 -82046401 + L1_Mur1 LINE L1 3276 4001 -1885 2 1463 4445 206 161 5 chr1 115149029 115149070 -82046362 + L1_Mur1 LINE L1 4552 4592 -1294 2 1463 1412 98 20 57 chr1 115149070 115149110 -82046322 - L1Md_F2 LINE L1 0 6582 6548 2 1463 299 61 0 39 chr1 115149110 115149161 -82046271 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 1463 1412 98 20 57 chr1 115149161 115149368 -82046064 - L1Md_F2 LINE L1 -35 6547 6344 2 1463 4445 206 161 5 chr1 115149368 115150397 -82045035 + L1_Mur1 LINE L1 4593 5789 -97 2 1463 3193 168 36 22 chr1 115150397 115150999 -82044433 + Lx LINE L1 6044 6654 0 2 1463 207 88 0 0 chr1 115151343 115151377 -82044055 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1463 324 385 128 20 chr1 115152198 115152402 -82043030 - B4A SINE B4 -65 227 2 2 1463 1035 64 14 14 chr1 115152429 115152571 -82042861 + B1_Mus1 SINE Alu 2 143 -5 2 1463 592 319 36 72 chr1 115152824 115152996 -82042436 - MTE2b LTR MaLR 0 379 205 2 1463 1391 75 21 0 chr1 115152996 115153184 -82042248 + B2_Mm2 SINE B2 2 193 -2 2 1463 592 319 36 72 chr1 115153184 115153234 -82042198 - MTE2b LTR MaLR -175 204 165 2 1463 524 387 14 4 chr1 115153298 115153578 -82041854 - B4A SINE B4 -6 286 4 2 1463 438 266 99 0 chr1 115153596 115153749 -82041683 - MTE2b LTR MaLR -200 179 1 2 1463 493 302 52 38 chr1 115153752 115153962 -82041470 - MTE2b-int LTR MaLR -3 1577 1365 2 1463 1414 231 19 33 chr1 115154029 115154388 -82041044 + ORR1D1 LTR MaLR 21 374 0 2 1463 771 294 43 98 chr1 115154517 115154913 -82040519 + RMER4B LTR ERVK 62 435 -150 2 1463 483 261 170 0 chr1 115155024 115155177 -82040255 - URR1B DNA MER1_type -46 179 1 3 1463 1002 262 60 15 chr1 115156034 115156301 -82039131 + MTE2b LTR MaLR 81 359 -20 3 1463 2301 144 53 18 chr1 115156489 115157199 -82038233 + RMER17D LTR ERVK 1 751 0 3 1463 261 363 71 49 chr1 115157581 115157949 -82037483 + ERVL-E-int LTR ERVL 3739 4114 -1553 3 1463 252 333 20 112 chr1 115158146 115158244 -82037188 + B4 SINE B4 200 288 -4 3 1463 890 177 11 16 chr1 115158704 115158888 -82036544 + MERVK26-int LTR ERVK 907 1089 -5830 3 1463 2711 88 5 3 chr1 115158888 115159263 -82036169 + L1_Mus3 LINE L1 6256 6631 -7 3 1463 339 214 89 43 chr1 115160393 115160564 -82034868 + ORR1E LTR MaLR 205 379 0 3 1463 1911 220 30 21 chr1 115160694 115161101 -82034331 + RMER10A LTR ERVL 7 425 -17 3 1463 1104 126 0 0 chr1 115161109 115161283 -82034149 + (TTCCC)n Simple_repeat Simple_repeat 3 176 0 3 1463 1911 220 30 21 chr1 115161283 115161298 -82034134 + RMER10A LTR ERVL 426 440 -2 3 1463 231 36 0 0 chr1 115161303 115161331 -82034101 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 3 1463 317 287 9 82 chr1 115161331 115161411 -82034021 - BC1_Mm scRNA scRNA -70 82 2 3 1463 346 326 14 29 chr1 115161425 115161564 -82033868 - ID_B1 SINE B4 -9 215 79 3 1463 42 36 0 0 chr1 115161591 115161647 -82033785 + AT_rich Low_complexity Low_complexity 1 56 0 3 1463 242 235 86 29 chr1 115163014 115163084 -82032348 + L1M3de LINE L1 821 894 -5759 3 1463 216 0 0 0 chr1 115163185 115163209 -82032223 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1463 250 305 32 0 chr1 115163414 115163509 -82031923 + MLT1A1 LTR MaLR 304 401 -7 3 1463 1323 280 31 17 chr1 115163684 115164033 -82031399 - ORR1E LTR MaLR 0 359 6 3 1463 323 60 20 0 chr1 115164034 115164084 -82031348 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1463 472 83 60 0 chr1 115164098 115164182 -82031250 + (GAAAA)n Simple_repeat Simple_repeat 2 90 0 3 1463 198 143 0 0 chr1 115164262 115164297 -82031135 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 3 1463 426 269 61 43 chr1 115164633 115164796 -82030636 - Charlie16a DNA MER1_type -44 298 133 3 1463 259 167 9 229 chr1 115165048 115165157 -82030275 + MLT1A0 LTR MaLR 21 105 -260 3 1463 5736 137 45 4 chr1 115165293 115166354 -82029078 - Lx LINE L1 -122 6532 5434 3 1463 6109 192 3 6 chr1 115166348 115167581 -82027851 + L1_Mur2 LINE L1 4168 5397 -480 3 1463 259 311 152 10 chr1 115168145 115168343 -82027089 - MER90 LTR ERV1 -344 231 6 3 1463 2086 195 8 8 chr1 115168409 115168796 -82026636 + ORR1B1 LTR MaLR 8 394 0 3 1463 750 312 73 78 chr1 115168797 115169180 -82026252 + MT2A LTR ERVL 19 399 -134 3 1463 1231 284 116 8 chr1 115169184 115169660 -82025772 + RLTR11A2 LTR ERVK 1 527 0 3 1463 418 303 32 24 chr1 115170354 115170479 -82024953 + B1_Mur4 SINE Alu 19 144 -6 3 1463 1325 317 48 62 chr1 115170679 115171178 -82024254 + MYSERV-int LTR ERVK 4274 4777 -1773 3 1463 186 43 0 0 chr1 115171178 115171201 -82024231 + (CAA)n Simple_repeat Simple_repeat 3 25 0 3 1463 1325 317 48 62 chr1 115171201 115171804 -82023628 + MYSERV-int LTR ERVK 4778 5360 -1190 3 1463 4122 34 16 2 chr1 115171870 115172369 -82023063 - L1Md_A LINE L1 -2 6580 6075 3 1463 3932 20 1 0 chr1 115172369 115173028 -82022404 + L1Md_T LINE L1 5411 6070 -512 3 1463 2412 242 109 30 chr1 115173034 115174035 -82021397 + MYSERV6-int LTR ERVK 7822 8901 -58 3 1463 417 277 81 73 chr1 115174121 115174394 -82021038 + RLTR11B LTR ERVK 5 279 -174 3 1463 711 80 0 0 chr1 115175076 115175188 -82020244 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 1463 1299 76 81 0 chr1 115176653 115176851 -82018581 - L1_Mus2 LINE L1 -2 6564 6351 3 1463 275 292 45 90 chr1 115177138 115177360 -82018072 + RLTR25A LTR ERVK 891 1102 -1 3 1463 931 272 94 11 chr1 115177691 115178041 -82017391 - MTEb LTR MaLR 0 379 1 3 1463 275 378 49 15 chr1 115178142 115178346 -82017086 - L2a LINE L2 -18 3408 3198 3 1463 245 264 23 35 chr1 115178431 115178533 -82016899 + GA-rich Low_complexity Low_complexity 1 100 0 3 1463 411 286 172 39 chr1 115178642 115178846 -82016586 + RMER15 LTR ERVL 275 505 -70 3 1463 669 25 0 0 chr1 115178846 115178925 -82016507 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1463 889 9 18 0 chr1 115179465 115179575 -82015857 + (TC)n Simple_repeat Simple_repeat 2 113 0 3 1463 765 308 24 9 chr1 115181014 115181224 -82014208 + ID_B1 SINE B4 8 220 -4 3 1463 281 237 153 15 chr1 115182671 115182808 -82012624 + Tigger7 DNA MER2_type 2259 2414 -77 3 1463 1417 257 27 38 chr1 115183457 115183894 -82011538 + RLTR20A LTR ERVK 63 470 -71 3 1463 441 0 0 0 chr1 115183958 115184007 -82011425 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1463 38 0 0 0 chr1 115184092 115184130 -82011302 + AT_rich Low_complexity Low_complexity 1 38 0 3 1463 3539 65 26 30 chr1 115184140 115184631 -82010801 - L1_Mus2 LINE L1 0 6566 6078 3 1463 204 250 18 0 chr1 115184667 115184723 -82010709 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3 1463 1050 53 0 0 chr1 115184723 115184856 -82010576 + (TC)n Simple_repeat Simple_repeat 2 134 0 3 1463 405 0 0 0 chr1 115184856 115184900 -82010532 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1463 615 14 0 0 chr1 115185309 115185381 -82010051 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1463 261 57 0 0 chr1 115185458 115185493 -82009939 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1463 720 96 0 0 chr1 115185493 115185608 -82009824 + (CA)n Simple_repeat Simple_repeat 1 115 0 3 1463 768 90 0 0 chr1 115186472 115186594 -82008838 + L1Md_F2 LINE L1 6458 6579 -3 3 1463 693 0 0 0 chr1 115186637 115186714 -82008718 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1463 4336 190 57 23 chr1 115187141 115188169 -82007263 - Lx2 LINE L1 0 6997 5935 3 1463 235 208 21 0 chr1 115188575 115188623 -82006809 + B4 SINE B4 27 75 -217 3 1463 186 103 0 0 chr1 115188636 115188665 -82006767 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1463 3563 125 7 0 chr1 115188666 115189203 -82006229 - L1_Mus3 LINE L1 -16 6622 6082 3 1463 4666 149 58 16 chr1 115189208 115190067 -82005365 - RMER17A2 LTR ERVK -11 895 1 3 1463 2442 105 8 0 chr1 115190069 115190442 -82004990 - L1_Mus3 LINE L1 -544 6094 5719 3 1463 478 316 123 19 chr1 115190486 115190747 -82004685 - B4A SINE B4 -2 290 3 3 1463 1371 131 3 92 chr1 115190920 115191139 -82004293 - L1_Mm LINE L1 -1005 4878 4684 3 1463 2202 0 0 0 chr1 115191139 115191383 -82004049 - L1Md_T LINE L1 0 6582 6339 3 1463 1371 131 3 92 chr1 115191383 115191457 -82003975 - L1_Mm LINE L1 -1200 4683 4611 3 1463 5825 159 21 3 chr1 115191454 115192781 -82002651 + Lx2 LINE L1 5289 6635 -362 3 1463 1086 196 4 9 chr1 115192774 115193006 -82002426 + Lx2 LINE L1 6762 6992 -5 3 1463 24 0 0 0 chr1 115193014 115193038 -82002394 + AT_rich Low_complexity Low_complexity 1 24 0 3 1463 223 303 0 0 chr1 115193134 115193223 -82002209 + GA-rich Low_complexity Low_complexity 2 90 0 3 1463 311 319 118 34 chr1 115195176 115195439 -81999993 + B4 SINE B4 4 288 -4 3 1463 506 114 11 0 chr1 115195605 115195693 -81999739 + (TC)n Simple_repeat Simple_repeat 1 89 0 3 1463 306 0 0 0 chr1 115195693 115195727 -81999705 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1463 441 0 0 0 chr1 115195727 115195775 -81999657 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1463 656 300 29 6 chr1 115195899 115196070 -81999362 + B3 SINE B2 6 180 -36 3 1463 534 332 76 9 chr1 115196472 115196682 -81998750 - MTEb LTR MaLR -31 348 125 3 1463 753 246 55 69 chr1 115196957 115197174 -81998258 + RMER17C LTR ERVK 1 385 -424 3 1463 519 60 0 0 chr1 115197174 115197241 -81998191 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1463 753 231 88 78 chr1 115197241 115197423 -81998009 + RMER17C LTR ERVK 235 410 0 3 1463 1244 278 55 105 chr1 115197423 115198202 -81997230 + RMER17C-int LTR ERVK 1 740 -2498 3 1463 319 243 0 0 chr1 115198607 115198677 -81996755 + RMER17C-int LTR ERVK 1161 1230 -2008 3 1463 8815 168 50 46 chr1 115198694 115200211 -81995221 + RMER17C-int LTR ERVK 1121 2591 -647 3 1463 7095 41 6 3 chr1 115200211 115201084 -81994348 + L1Md_F3 LINE L1 5708 6582 -2 3 1463 8815 168 50 46 chr1 115201084 115201351 -81994081 + RMER17C-int LTR ERVK 2592 2867 -371 3 1463 360 0 0 0 chr1 115201351 115201391 -81994041 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1463 498 33 0 0 chr1 115201399 115201459 -81993973 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1463 8815 168 50 46 chr1 115201459 115201715 -81993717 + RMER17C-int LTR ERVK 2906 3177 -61 3 1463 888 252 23 58 chr1 115201716 115201833 -81993599 + RMER17C LTR ERVK 78 184 -226 3 1463 688 22 0 22 chr1 115201833 115201925 -81993507 + (TCC)n Simple_repeat Simple_repeat 2 91 0 3 1463 888 252 23 58 chr1 115201925 115201965 -81993467 + RMER17C LTR ERVK 185 224 -186 3 1463 345 24 0 0 chr1 115201965 115202007 -81993425 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1463 888 252 23 58 chr1 115202007 115202193 -81993239 + RMER17C LTR ERVK 225 410 0 3 1463 214 259 69 0 chr1 115202356 115202414 -81993018 - RSINE1 SINE B4 -38 127 66 3 1463 249 119 0 0 chr1 115202544 115202586 -81992846 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 1463 707 354 57 39 chr1 115202875 115203157 -81992275 + B4 SINE B4 6 292 0 3 1463 260 158 18 0 chr1 115203162 115203219 -81992213 + GA-rich Low_complexity Low_complexity 2 59 0 3 1463 3700 241 45 58 chr1 115203276 115204642 -81990790 + RMER12 LTR ERVK 1 1848 0 3 1463 24 32 0 0 chr1 115205410 115205441 -81989991 + AT_rich Low_complexity Low_complexity 1 31 0 3 1463 408 309 121 116 chr1 115205532 115205911 -81989521 + MTD LTR MaLR 1 405 -14 3 1463 227 194 59 15 chr1 115205865 115205933 -81989499 + Charlie23a DNA MER1_type 207 277 -62 3 1463 240 289 13 0 chr1 115205949 115206025 -81989407 + L1MC1 LINE L1 6224 6300 -33 3 1463 255 289 111 20 chr1 115206523 115206622 -81988810 + Lx8 LINE L1 7248 7355 -118 3 1463 2598 150 2 2 chr1 115206790 115207197 -81988235 - MTB_Mm LTR MaLR 0 407 1 3 1463 232 341 125 29 chr1 115207472 115207608 -81987824 + B4 SINE B4 126 274 -18 3 1463 189 0 0 0 chr1 115207615 115207636 -81987796 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1463 304 250 0 0 chr1 115208339 115208419 -81987013 + Lx8 LINE L1 6881 6960 -513 3 1463 3234 42 2 5 chr1 115208561 115208968 -81986464 + L1Md_F2 LINE L1 6165 6570 -12 3 1463 1115 258 107 30 chr1 115209057 115209488 -81985944 + Lx8 LINE L1 7010 7473 0 3 1463 244 397 34 25 chr1 115209527 115209646 -81985786 + B4 SINE B4 7 126 -166 3 1463 849 284 95 62 chr1 115209795 115210300 -81985132 - RMER13A LTR ERVK -11 616 72 3 1463 1835 228 33 60 chr1 115210611 115211302 -81984130 - L1_Mur1 LINE L1 -4404 1482 803 4 1463 369 345 50 28 chr1 115211416 115211598 -81983834 - MER44B DNA MER2_type -358 192 7 4 1463 381 314 22 28 chr1 115211690 115211870 -81983562 + B3A SINE B2 4 182 -16 4 1463 1155 106 67 0 chr1 115211907 115212087 -81983345 + B2_Mm2 SINE B2 2 193 -2 4 1464 231 60 0 57 chr1 115213319 115213372 -81982060 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 4 1464 303 28 0 0 chr1 115213400 115213436 -81981996 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 4 1464 197 33 0 32 chr1 115213612 115213643 -81981789 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1464 238 340 73 83 chr1 115213726 115213944 -81981488 + RLTR25B LTR ERVK 813 1028 0 4 1464 24 77 0 0 chr1 115214583 115214635 -81980797 + AT_rich Low_complexity Low_complexity 1 52 0 4 1464 363 320 0 0 chr1 115214813 115214910 -81980522 + ID_B1 SINE B4 80 176 -48 4 1464 516 202 0 41 chr1 115214833 115214931 -81980501 + PB1D10 SINE Alu 19 112 -5 4 1464 463 273 41 41 chr1 115215069 115215241 -81980191 - MTEb LTR MaLR -3 376 205 4 1464 276 366 3 31 chr1 115215252 115215397 -81980035 - MTEb LTR MaLR -234 136 1 4 1464 372 291 13 0 chr1 115215447 115215526 -81979906 + B4 SINE B4 1 80 -212 4 1464 374 262 0 7 chr1 115215542 115215692 -81979740 + GA-rich Low_complexity Low_complexity 4 152 0 4 1464 638 335 50 0 chr1 115215696 115215896 -81979536 + B4 SINE B4 83 292 0 4 1464 844 269 40 28 chr1 115216028 115216349 -81979083 - RLTR15 LTR ERVK -32 327 3 4 1464 946 311 100 6 chr1 115216850 115217180 -81978252 + ORR1E LTR MaLR 3 379 0 4 1464 242 29 29 0 chr1 115217207 115217242 -81978190 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1464 307 95 0 0 chr1 115218543 115218585 -81976847 + RLTR11A LTR ERVK 18 59 -469 4 1464 1696 177 90 3 chr1 115218598 115218932 -81976500 + RLTR11A LTR ERVK 160 522 -6 4 1464 26 64 0 0 chr1 115219336 115219383 -81976049 + AT_rich Low_complexity Low_complexity 1 47 0 4 1464 1405 251 11 23 chr1 115219723 115220073 -81975359 - ORR1A2 LTR MaLR 0 346 1 4 1464 293 170 19 0 chr1 115220073 115220126 -81975306 - ORR1A2-int LTR MaLR 0 1963 1910 4 1464 1940 153 3 58 chr1 115220127 115220473 -81974959 - ORR1A2 LTR MaLR 0 327 1 4 1464 3761 160 48 1 chr1 115220473 115221125 -81974307 - ORR1A2-int LTR MaLR 0 1963 1282 4 1464 1412 99 9 86 chr1 115221121 115221353 -81974079 - ORR1A2 LTR MaLR -109 218 5 4 1464 5320 203 44 38 chr1 115221337 115222560 -81972872 - ORR1A2-int LTR MaLR -29 1934 630 4 1464 294 29 0 0 chr1 115222560 115222595 -81972837 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1464 650 201 75 48 chr1 115222595 115222791 -81972641 - ORR1A2-int LTR MaLR -880 629 438 4 1464 3045 256 46 111 chr1 115222791 115223704 -81971728 + RMER13A LTR ERVK 1 854 -6 4 1464 4831 168 31 11 chr1 115223762 115224905 -81970527 + Lx2 LINE L1 4976 6143 -854 4 1464 289 311 67 10 chr1 115224932 115225036 -81970396 + L1MCa LINE L1 376 485 -6023 4 1464 430 241 128 0 chr1 115225879 115226012 -81969420 - L1MA6 LINE L1 -82 6218 6069 4 1464 246 351 21 11 chr1 115226100 115226195 -81969237 + Lx8 LINE L1 7197 7292 -181 4 1464 1320 280 101 0 chr1 115226760 115227096 -81968336 + MTE2b LTR MaLR 5 374 -5 4 1464 777 366 18 7 chr1 115227148 115227434 -81967998 + B4A SINE B4 2 290 -2 4 1464 333 47 0 0 chr1 115227512 115227555 -81967877 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1464 558 0 0 0 chr1 115227577 115227639 -81967793 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1464 967 290 24 0 chr1 115227650 115227902 -81967530 - B4A SINE B4 -32 260 3 4 1464 378 121 0 17 chr1 115228115 115228174 -81967258 - RMER10A LTR ERVL -384 58 1 4 1464 433 311 48 63 chr1 115228178 115228367 -81967065 + B4A SINE B4 100 285 -7 4 1464 423 0 0 0 chr1 115228372 115228419 -81967013 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1464 361 219 136 48 chr1 115230224 115230349 -81965083 + RLTR22_Mur LTR ERVK 1643 1778 -70 4 1464 231 435 0 53 chr1 115230496 115230627 -81964805 - RSINE1 SINE B4 -17 148 25 4 1464 15967 59 5 3 chr1 115230675 115233365 -81962067 - L1Md_F3 LINE L1 -10 6574 3878 4 1464 4611 16 2 12 chr1 115233365 115233863 -81961569 + MT2_Mm LTR ERVL 1 493 0 4 1464 48826 15 0 0 chr1 115233863 115239223 -81956209 + MERVL-int LTR ERVL 1 5360 -125 4 1464 387 167 46 35 chr1 115239223 115239310 -81956122 + ORR1A3-int LTR MaLR 553 640 -1323 4 1464 322 0 0 0 chr1 115239310 115239348 -81956084 + MERVL-int LTR ERVL 5448 5485 0 4 1464 4611 16 2 12 chr1 115239348 115239846 -81955586 + MT2_Mm LTR ERVL 1 493 0 4 1464 20417 75 5 2 chr1 115239847 115243122 -81952310 - L1Md_A LINE L1 -2002 3881 439 4 1464 1073 101 0 26 chr1 115244227 115244379 -81951053 + B1_Mus1 SINE Alu 1 148 0 4 1464 399 306 45 0 chr1 115244534 115244668 -81950764 + RMER15 LTR ERVL 422 561 -14 4 1464 2991 101 7 20 chr1 115245234 115245637 -81949795 - L1_Mus2 LINE L1 0 6566 6169 4 1464 545 184 17 9 chr1 115246622 115246737 -81948695 - Lx LINE L1 -3 6651 6536 4 1464 225 0 0 0 chr1 115246737 115246762 -81948670 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 1464 746 338 68 5 chr1 115246901 115247233 -81948199 - ORR1E LTR MaLR 0 379 3 4 1464 2677 278 68 67 chr1 115247235 115247570 -81947862 - Lx9 LINE L1 -379 7265 6939 4 1464 472 125 114 0 chr1 115247570 115247658 -81947774 + Lx3C LINE L1 6878 6975 -1 4 1464 2677 278 68 67 chr1 115247658 115248403 -81947029 - Lx9 LINE L1 -706 6938 6183 4 1464 4356 168 24 93 chr1 115248619 115249588 -81945844 + RMER17A2 LTR ERVK 3 904 -2 4 1464 804 315 56 7 chr1 115249742 115250011 -81945421 + B4A SINE B4 5 286 -6 4 1464 1181 258 75 53 chr1 115250180 115250421 -81945011 + ORR1D1 LTR MaLR 1 238 -136 4 1464 4698 118 22 103 chr1 115250421 115250858 -81944574 - RMER17D2 LTR ERVK 0 809 408 4 1464 1197 82 0 13 chr1 115250858 115251007 -81944425 + B1_Mm SINE Alu 1 147 0 4 1464 4698 118 22 103 chr1 115251007 115251449 -81943983 - RMER17D2 LTR ERVK -402 407 2 4 1464 1181 258 75 53 chr1 115251449 115251567 -81943865 + ORR1D1 LTR MaLR 239 368 -6 4 1464 258 359 9 28 chr1 115251790 115251896 -81943536 - LTR78 LTR ERV1 -15 1289 1186 4 1464 846 280 9 14 chr1 115251930 115252140 -81943292 - RLTR18B LTR ERVK -4 508 300 4 1464 436 304 16 0 chr1 115252176 115252301 -81943131 - RLTR18B LTR ERVK -375 137 11 4 1464 247 324 0 0 chr1 115252706 115252774 -81942658 - MTA_Mm LTR MaLR -320 76 9 4 1464 297 263 21 10 chr1 115252779 115252875 -81942557 + MTC LTR MaLR 325 421 0 4 1464 619 312 121 30 chr1 115252918 115253155 -81942277 + B4 SINE B4 5 271 -21 4 1464 456 123 0 0 chr1 115253155 115253228 -81942204 + (CATA)n Simple_repeat Simple_repeat 4 76 0 4 1464 619 312 121 30 chr1 115253228 115253254 -81942178 + B4 SINE B4 272 292 0 4 1464 649 347 88 4 chr1 115253790 115254062 -81941370 - MLT1A0 LTR MaLR -37 328 34 4 1464 393 58 0 0 chr1 115254063 115254115 -81941317 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1464 964 297 3 56 chr1 115254140 115254443 -81940989 - B4 SINE B4 -5 287 1 4 1464 22 0 0 0 chr1 115255562 115255584 -81939848 + AT_rich Low_complexity Low_complexity 1 22 0 4 1464 657 73 0 0 chr1 115255994 115256090 -81939342 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 4 1464 336 304 158 7 chr1 115256141 115256280 -81939152 + RSINE1 SINE B4 4 163 -2 4 1464 225 311 0 26 chr1 115256903 115256979 -81938453 + B4A SINE B4 9 82 -210 4 1464 342 261 0 33 chr1 115257001 115257092 -81938340 + B4A SINE B4 161 248 -44 4 1464 2873 75 3 0 chr1 115257094 115257439 -81937993 - ORR1A1 LTR MaLR 0 346 1 4 1464 12031 67 9 4 chr1 115257439 115259107 -81936325 - ORR1A1-int LTR MaLR 0 1792 116 4 1464 583 338 53 0 chr1 115259100 115259307 -81936125 - MTEa LTR MaLR -158 221 4 4 1464 711 304 48 0 chr1 115260176 115260383 -81935049 - ID_B1 SINE B4 -7 217 1 4 1464 1153 297 42 6 chr1 115261872 115262204 -81933228 - ORR1E LTR MaLR -15 344 1 4 1464 2784 201 106 10 chr1 115262221 115262833 -81932599 - RMER17B LTR ERVK -4 954 284 4 1464 11064 22 0 0 chr1 115262837 115264769 -81930663 - L1Md_T LINE L1 -11 6571 4640 4 1464 1771 147 41 21 chr1 115264772 115264817 -81930615 - RMER17B LTR ERVK -659 299 257 4 1464 4410 23 27 0 chr1 115264817 115265297 -81930135 + MT2_Mm LTR ERVL 1 493 0 4 1464 1771 147 41 21 chr1 115265297 115265542 -81929890 - RMER17B LTR ERVK -702 256 3 4 1464 288 370 43 48 chr1 115265919 115266065 -81929367 + B4 SINE B4 84 231 -61 4 1464 270 0 0 0 chr1 115266065 115266095 -81929337 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1464 288 380 32 32 chr1 115266095 115266158 -81929274 + B4 SINE B4 230 292 0 4 1464 185 321 85 0 chr1 115266506 115266612 -81928820 - MIR3 SINE MIR -4 204 90 4 1464 231 36 0 0 chr1 115266681 115266709 -81928723 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1464 395 280 25 8 chr1 115266800 115266919 -81928513 + RMER5 LTR ERV1 414 534 0 4 1464 333 0 0 0 chr1 115267352 115267389 -81928043 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1464 642 105 0 0 chr1 115267389 115267494 -81927938 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 1464 2935 103 7 16 chr1 115267986 115268410 -81927022 - L1_Mus4 LINE L1 -474 6162 5743 4 1464 3481 108 2 6 chr1 115268420 115268895 -81926537 + L1_Mus4 LINE L1 6164 6636 0 4 1464 1048 282 75 17 chr1 115268935 115269296 -81926136 - Lx8 LINE L1 -478 6995 6614 4 1464 648 289 48 56 chr1 115269330 115269561 -81925871 - B4 SINE B4 -59 233 5 4 1464 216 0 0 0 chr1 115269575 115269599 -81925833 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1464 476 271 56 14 chr1 115270418 115270560 -81924872 + RMER21B LTR ERV1 345 492 -350 4 1464 272 269 17 96 chr1 115270645 115270760 -81924672 + RMER21B LTR ERV1 796 901 -46 4 1464 908 232 106 34 chr1 115270777 115271013 -81924419 + MTD LTR MaLR 164 416 -3 4 1464 698 301 5 72 chr1 115271068 115271276 -81924156 + B4A SINE B4 97 290 -2 4 1464 334 346 59 0 chr1 115271669 115271805 -81923627 + MLT1B LTR MaLR 1 144 -246 4 1464 24 0 0 29 chr1 115272083 115272100 -81923332 + AT_rich Low_complexity Low_complexity 1 17 0 4 1464 604 254 249 0 chr1 115272100 115272273 -81923159 + B3 SINE B2 1 216 0 4 1464 24 0 0 29 chr1 115272273 115272290 -81923142 + AT_rich Low_complexity Low_complexity 1 17 0 4 1464 254 281 67 0 chr1 115272324 115272453 -81922979 - Charlie1a DNA MER1_type -561 894 757 4 1464 561 42 0 0 chr1 115272453 115272525 -81922907 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1464 354 91 0 0 chr1 115272530 115272585 -81922847 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1464 306 315 21 11 chr1 115272622 115272715 -81922717 - B4A SINE B4 -7 285 192 4 1464 368 314 64 25 chr1 115272954 115273111 -81922321 - Charlie1a DNA MER1_type -1252 203 41 4 1464 305 296 48 14 chr1 115273421 115273578 -81921854 + L1MA4 LINE L1 5447 5605 -692 4 1464 338 0 24 0 chr1 115273578 115273620 -81921812 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1464 280 306 150 57 chr1 115273620 115273741 -81921691 + L1MA4 LINE L1 5605 5761 -428 4 1464 1210 95 0 0 chr1 115273741 115273888 -81921544 + B1_Mm SINE Alu 1 147 0 4 1464 280 293 100 34 chr1 115273888 115274075 -81921357 + L1MA4 LINE L1 5762 5959 -230 4 1464 224 211 40 0 chr1 115274188 115274264 -81921168 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1464 4978 216 89 83 chr1 115274270 115275364 -81920068 + RLTR22_Mur LTR ERVK 1 1162 -686 5 1464 3033 96 18 0 chr1 115275364 115275760 -81919672 - L1_Mus1 LINE L1 0 6567 6165 5 1464 4978 237 91 84 chr1 115275760 115276468 -81918964 + RLTR22_Mur LTR ERVK 1072 1637 -211 5 1464 441 0 0 0 chr1 115276510 115276559 -81918873 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1464 500 366 138 0 chr1 115276780 115277078 -81918354 - MER2 DNA MER2_type 0 345 7 5 1464 242 233 83 0 chr1 115277087 115277147 -81918285 + L1M5 LINE L1 5638 5702 -422 5 1464 1238 57 6 0 chr1 115277151 115277308 -81918124 + B2_Mm2 SINE B2 1 158 -37 5 1464 225 0 0 0 chr1 115277310 115277335 -81918097 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1464 616 274 77 31 chr1 115277530 115277726 -81917706 + B3 SINE B2 1 205 -11 5 1464 725 308 67 11 chr1 115277777 115278022 -81917410 + B4 SINE B4 24 271 -21 5 1464 372 94 0 0 chr1 115278107 115278160 -81917272 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 1464 249 75 37 19 chr1 115278230 115278284 -81917148 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1464 309 136 0 0 chr1 115278871 115278915 -81916517 - HAL1-3A_ME LINE L1 -839 2019 1976 5 1464 245 223 36 6 chr1 115278915 115279082 -81916350 + (TG)n Simple_repeat Simple_repeat 2 173 0 5 1464 345 219 0 0 chr1 115279167 115279281 -81916151 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 1464 301 295 0 0 chr1 115279282 115279394 -81916038 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 5 1464 504 77 0 0 chr1 115279418 115279496 -81915936 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1464 371 323 74 64 chr1 115279496 115279698 -81915734 - B4A SINE B4 -4 288 85 5 1464 421 351 15 0 chr1 115280194 115280328 -81915104 + B4 SINE B4 1 136 -156 5 1464 298 342 91 61 chr1 115280488 115280653 -81914779 + B4 SINE B4 123 292 0 5 1464 335 188 16 0 chr1 115280658 115280722 -81914710 + HAL1-3A_ME LINE L1 1976 2040 -818 5 1464 485 289 39 87 chr1 115281026 115281234 -81914198 + B3A SINE B2 1 198 0 5 1464 447 323 41 57 chr1 115282209 115282505 -81912927 - B4A SINE B4 0 292 1 5 1464 2349 159 15 55 chr1 115282599 115283070 -81912362 + RLTR11B LTR ERVK 1 452 -1 5 1464 358 321 100 58 chr1 115283377 115283638 -81911794 + B4 SINE B4 3 274 -18 5 1464 196 175 0 31 chr1 115283659 115283724 -81911708 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1464 193 284 47 58 chr1 115284122 115284208 -81911224 + L3 LINE CR1 4270 4354 -135 5 1464 811 232 10 51 chr1 115284274 115284469 -81910963 + B2_Mm2 SINE B2 1 187 -8 5 1464 485 16 16 0 chr1 115284807 115284869 -81910563 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 5 1464 326 337 129 0 chr1 115284905 115285083 -81910349 - MIRb SINE MIR -54 214 14 5 1464 834 311 27 27 chr1 115285121 115285379 -81910053 + B4A SINE B4 17 274 -18 5 1464 625 258 11 6 chr1 115285457 115285636 -81909796 + Lx9 LINE L1 7191 7370 -274 5 1464 377 174 105 35 chr1 115285637 115285780 -81909652 + Lx9 LINE L1 7490 7642 -2 5 1464 435 19 0 0 chr1 115285873 115285925 -81909507 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1464 1335 241 23 44 chr1 115286672 115287059 -81908373 + MTE2a LTR MaLR 1 379 0 5 1464 22 56 0 0 chr1 115288042 115288078 -81907354 + AT_rich Low_complexity Low_complexity 1 36 0 5 1464 183 156 0 0 chr1 115288196 115288228 -81907204 + T-rich Low_complexity Low_complexity 1 32 0 5 1464 228 223 228 16 chr1 115288471 115288594 -81906838 - Lx8 LINE L1 -443 7030 6882 5 1464 495 0 0 0 chr1 115288722 115288777 -81906655 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1464 185 0 40 0 chr1 115289067 115289092 -81906340 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1464 555 284 16 16 chr1 115289102 115289231 -81906201 + RSINE1 SINE B4 28 156 -9 5 1464 916 277 41 25 chr1 115289282 115289526 -81905906 + B4 SINE B4 44 291 -1 5 1464 192 216 0 0 chr1 115289546 115289597 -81905835 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1464 1098 88 0 0 chr1 115290512 115290659 -81904773 + B1_Mus1 SINE Alu 2 148 0 5 1464 351 0 0 0 chr1 115290664 115290703 -81904729 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 1464 405 0 0 0 chr1 115290960 115291005 -81904427 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 5 1464 814 82 0 71 chr1 115291005 115291176 -81904256 - B1_Mm SINE Alu -12 137 1 5 1464 394 150 0 187 chr1 115291056 115291195 -81904237 - MT2B LTR ERVL -331 270 158 5 1464 238 380 34 27 chr1 115291460 115291606 -81903826 + B4A SINE B4 58 204 -88 5 1464 235 263 18 0 chr1 115291663 115291720 -81903712 + (CATA)n Simple_repeat Simple_repeat 3 60 0 5 1464 545 325 107 35 chr1 115292771 115293032 -81902400 + B4A SINE B4 3 282 -10 5 1464 417 54 0 0 chr1 115293058 115293114 -81902318 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1464 393 109 0 0 chr1 115293809 115293873 -81901559 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1464 252 279 26 18 chr1 115293981 115294094 -81901338 - Lx7 LINE L1 -2 7694 7581 5 1464 2836 266 37 4 chr1 115294224 115295013 -81900419 - Lx7 LINE L1 -350 7346 6532 5 1464 939 286 9 9 chr1 115295026 115295245 -81900187 - B4 SINE B4 -72 220 2 5 1464 351 299 110 0 chr1 115295505 115295632 -81899800 + B3 SINE B2 1 141 -75 5 1464 423 0 0 0 chr1 115295654 115295701 -81899731 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 1464 378 306 130 65 chr1 115295955 115296140 -81899292 - B3A SINE B2 -1 197 1 5 1464 393 333 0 26 chr1 115296542 115296656 -81898776 + PB1 SINE Alu 14 124 -3 5 1464 373 348 25 37 chr1 115296652 115296813 -81898619 - MER58A DNA MER1_type -23 201 43 5 1464 1199 61 7 0 chr1 115297453 115297600 -81897832 + B1_Mus1 SINE Alu 1 148 0 5 1464 320 88 0 17 chr1 115297603 115297661 -81897771 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 5 1464 3279 226 149 10 chr1 115298132 115298929 -81896503 - RMER13B LTR ERVK 0 908 1 5 1464 7412 2 0 0 chr1 115299656 115300471 -81894961 - L1Md_A LINE L1 0 6582 5768 5 1464 263 206 43 14 chr1 115300621 115300690 -81894742 + ID SINE ID 1 71 -153 5 1464 204 135 0 0 chr1 115301041 115301078 -81894354 + (CAGAGA)n Simple_repeat Simple_repeat 2 38 0 5 1464 306 250 116 19 chr1 115301373 115301528 -81893904 + L1MD LINE L1 3030 3199 -2947 5 1464 569 309 15 10 chr1 115301561 115301767 -81893665 - ID_B1 SINE B4 -13 211 5 5 1464 2980 86 8 0 chr1 115301818 115302215 -81893217 + MTB LTR MaLR 1 400 0 5 1464 273 384 44 128 chr1 115302750 115302953 -81892479 + B4A SINE B4 3 188 -104 5 1464 21 0 0 0 chr1 115303165 115303186 -81892246 + AT_rich Low_complexity Low_complexity 1 21 0 5 1464 2418 226 49 69 chr1 115303387 115304042 -81891390 + RLTR26 LTR ERVK 1 642 0 5 1464 6393 188 41 48 chr1 115304042 115305097 -81890335 + MERVK26-int LTR ERVK 1 1050 -5869 5 1464 2392 99 11 8 chr1 115305097 115305454 -81889978 + L1_Mus3 LINE L1 6281 6638 0 5 1464 6393 188 41 48 chr1 115305454 115305921 -81889511 + MERVK26-int LTR ERVK 1051 1512 -5407 5 1464 8983 187 49 23 chr1 115305921 115308253 -81887179 - Lx5 LINE L1 -766 6284 3900 5 1464 495 301 162 28 chr1 115308732 115308985 -81886447 - RMER15 LTR ERVL -13 562 276 5 1464 811 244 132 51 chr1 115309410 115309742 -81885690 - RLTR9A LTR ERVK -9 359 1 5 1464 949 303 39 23 chr1 115310029 115310286 -81885146 + MTEa LTR MaLR 9 269 -110 5 1464 667 317 33 42 chr1 115310279 115310519 -81884913 + MTE2a LTR MaLR 18 255 -124 5 1464 323 287 35 9 chr1 115310696 115310812 -81884620 + MTE2a LTR MaLR 261 379 0 5 1464 266 319 0 0 chr1 115311018 115311087 -81884345 - B4 SINE B4 -191 101 33 5 1464 246 132 0 0 chr1 115311088 115311141 -81884291 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1464 554 280 87 15 chr1 115311467 115311663 -81883769 + B3 SINE B2 1 210 -6 5 1464 295 276 11 65 chr1 115311807 115311900 -81883532 + B1_Mur2 SINE Alu 61 148 -1 5 1464 273 119 0 0 chr1 115311900 115311942 -81883490 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 1464 261 0 0 0 chr1 115312011 115312040 -81883392 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1464 253 185 31 0 chr1 115312274 115312339 -81883093 + (TTA)n Simple_repeat Simple_repeat 1 67 0 5 1464 220 315 50 99 chr1 115312339 115312480 -81882952 - B3 SINE B2 -1 215 82 5 1464 366 335 22 72 chr1 115313060 115313240 -81882192 - MER58A DNA MER1_type -11 213 43 5 1464 236 91 23 0 chr1 115313871 115313915 -81881517 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 5 1464 594 96 9 0 chr1 115313916 115314012 -81881420 - B1_Mm SINE Alu -2 147 47 5 1464 506 369 20 45 chr1 115314105 115314304 -81881128 + B4 SINE B4 99 292 0 5 1464 5697 136 58 22 chr1 115314908 115316025 -81879407 - Lx LINE L1 -5 6649 5506 5 1464 1591 171 0 0 chr1 115316023 115316322 -81879110 + L1_Mur2 LINE L1 5021 5319 -558 5 1464 7116 39 2 1 chr1 115316313 115317299 -81878133 - L1Md_F2 LINE L1 -612 5970 4985 5 1464 4762 65 0 2 chr1 115317299 115317904 -81877528 + L1Md_F2 LINE L1 5965 6568 -14 5 1464 1267 74 0 11 chr1 115318456 115318633 -81876799 + L1Md_F2 LINE L1 6316 6490 -92 5 1464 1233 119 15 0 chr1 115318643 115318844 -81876588 + L1_Mm LINE L1 5309 5512 -371 5 1464 624 321 57 5 chr1 115318923 115319117 -81876315 + ID_B1 SINE B4 11 214 -10 5 1464 243 23 68 0 chr1 115319117 115319161 -81876271 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1464 181 273 0 0 chr1 115319234 115319278 -81876154 + MIR SINE MIR 88 131 -77 5 1464 814 328 59 4 chr1 115319923 115320177 -81875255 - B4A SINE B4 -8 284 17 5 1464 213 39 0 0 chr1 115320435 115320461 -81874971 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1464 998 271 155 108 chr1 115321078 115321640 -81873792 + RMER20B LTR ERVK 11 598 -29 5 1464 213 159 0 0 chr1 115321798 115321842 -81873590 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 5 1464 474 316 21 7 chr1 115322168 115322308 -81873124 - ID_B1 SINE B4 -15 209 68 5 1464 349 339 149 62 chr1 115322912 115323107 -81872325 + B4A SINE B4 2 213 -79 6 1464 6583 76 14 1 chr1 115323448 115324373 -81871059 - L1_Mus1 LINE L1 0 6567 5631 6 1464 770 31 0 0 chr1 115324361 115324459 -81870973 + L1_Mm LINE L1 5348 5445 -438 6 1464 285 29 0 0 chr1 115325188 115325222 -81870210 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1464 288 0 0 0 chr1 115325222 115325253 -81870179 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1464 540 0 0 0 chr1 115325256 115325316 -81870116 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1464 275 290 114 61 chr1 115325427 115325559 -81869873 - B4 SINE B4 -145 147 9 6 1464 456 318 0 23 chr1 115325595 115325724 -81869708 - RSINE1 SINE B4 -38 127 2 6 1464 8086 31 3 0 chr1 115325831 115326918 -81868514 - L1Md_T LINE L1 0 6582 5532 6 1464 251 345 112 63 chr1 115327008 115327311 -81868121 + LTR16A LTR ERVL 28 345 -106 6 1464 21 57 0 0 chr1 115327518 115327553 -81867879 + AT_rich Low_complexity Low_complexity 1 35 0 6 1464 752 304 74 27 chr1 115329149 115329406 -81866026 + MTEa LTR MaLR 1 269 -110 6 1464 954 282 55 17 chr1 115329418 115329707 -81865725 + MTEb LTR MaLR 40 339 -40 6 1464 692 54 0 11 chr1 115330054 115330148 -81865284 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 6 1464 483 87 0 0 chr1 115330148 115330217 -81865215 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1464 535 27 14 14 chr1 115330638 115330712 -81864720 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1464 357 62 0 0 chr1 115330712 115330759 -81864673 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1464 225 256 49 49 chr1 115331130 115331212 -81864220 + L2a LINE L2 3331 3412 -14 6 1464 288 119 44 15 chr1 115331393 115331461 -81863971 + GA-rich Low_complexity Low_complexity 2 71 0 6 1464 433 395 16 12 chr1 115331462 115331708 -81863724 - RMER15 LTR ERVL -90 485 239 6 1464 2262 225 86 0 chr1 115332248 115332723 -81862709 + RMER20A LTR ERVK 1 516 0 6 1464 280 265 59 0 chr1 115333137 115333205 -81862227 + B4 SINE B4 2 73 -219 6 1464 241 401 68 0 chr1 115333245 115333422 -81862010 + B3A SINE B2 10 198 0 6 1464 408 370 7 0 chr1 115333415 115333561 -81861871 + B4A SINE B4 81 227 -65 6 1464 423 83 0 0 chr1 115333567 115333627 -81861805 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1464 274 274 235 12 chr1 115335030 115335200 -81860232 + RMER15 LTR ERVL 61 268 -307 6 1464 444 220 41 41 chr1 115335252 115335375 -81860057 + RMER15 LTR ERVL 383 505 -70 6 1464 764 358 29 7 chr1 115335958 115336234 -81859198 + B4 SINE B4 9 290 -2 6 1464 459 0 0 0 chr1 115336770 115336821 -81858611 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1464 1103 286 93 3 chr1 115338465 115338818 -81856614 - ORR1D1 LTR MaLR -14 370 1 6 1464 1253 254 34 10 chr1 115338820 115339114 -81856318 - MT2A LTR ERVL -232 301 1 6 1464 245 273 0 57 chr1 115339431 115339501 -81855931 - Lx8 LINE L1 -788 6685 6620 6 1464 594 0 0 0 chr1 115339609 115339675 -81855757 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1464 839 68 17 0 chr1 115340677 115340795 -81854637 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 6 1464 4690 85 0 3 chr1 115340798 115341427 -81854005 - L1Md_F2 LINE L1 -19 6563 5937 6 1464 6892 65 1 0 chr1 115341429 115342429 -81853003 + L1Md_F2 LINE L1 4945 5945 -637 6 1464 207 0 0 0 chr1 115342624 115342647 -81852785 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1464 1119 91 0 0 chr1 115343057 115343290 -81852142 + (CA)n Simple_repeat Simple_repeat 1 233 0 6 22 1088 84 0 6 chr1 115343308 115343488 -81851944 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1465 450 0 0 0 chr1 115343743 115343793 -81851639 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1465 209 98 0 24 chr1 115344111 115344153 -81851279 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 6 1465 465 34 0 0 chr1 115344158 115344217 -81851215 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1465 1215 48 0 0 chr1 115344219 115344365 -81851067 - B1_Mm SINE Alu 0 147 2 6 1465 207 0 0 0 chr1 115344365 115344388 -81851044 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1465 664 289 25 15 chr1 115344478 115344678 -81850754 - MTE2b LTR MaLR -5 374 173 6 1465 370 315 37 0 chr1 115344692 115344800 -81850632 - MTE2b LTR MaLR -267 112 1 6 1465 253 310 11 11 chr1 115344927 115345015 -81850417 + GA-rich Low_complexity Low_complexity 5 92 0 6 1465 302 67 22 0 chr1 115345566 115345611 -81849821 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1465 1252 256 105 0 chr1 115345758 115346090 -81849342 - MTEb LTR MaLR -12 367 1 6 1465 846 297 25 11 chr1 115347161 115347437 -81847995 + B4 SINE B4 5 284 -8 6 1465 36 87 0 0 chr1 115347722 115347814 -81847618 + AT_rich Low_complexity Low_complexity 1 92 0 6 1465 1110 118 26 46 chr1 115348014 115348209 -81847223 + B2_Mm1t SINE B2 3 193 0 6 1465 244 326 0 104 chr1 115348377 115348483 -81846949 + B4A SINE B4 198 292 0 6 1465 567 81 0 0 chr1 115348664 115348750 -81846682 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 1465 739 251 31 0 chr1 115348751 115348914 -81846518 - B3A SINE B2 -28 170 3 6 1465 572 211 7 0 chr1 115349689 115349831 -81845601 + CT-rich Low_complexity Low_complexity 2 144 0 6 1465 792 326 10 34 chr1 115349896 115350108 -81845324 - B4 SINE B4 0 292 89 6 1465 216 0 0 0 chr1 115350108 115350132 -81845300 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1465 792 326 10 34 chr1 115350132 115350217 -81845215 - B4 SINE B4 -204 88 2 6 1465 291 353 115 85 chr1 115350857 115351188 -81844244 - ORR1E LTR MaLR -11 348 8 6 1465 708 122 0 0 chr1 115351435 115351558 -81843874 + (GA)n Simple_repeat Simple_repeat 2 124 0 6 1465 201 94 0 0 chr1 115351915 115351947 -81843485 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 6 1465 441 331 72 7 chr1 115351992 115352144 -81843288 - B4A SINE B4 -121 171 10 6 1465 1626 89 8 29 chr1 115353014 115353256 -81842176 + L1_Mus2 LINE L1 6327 6563 -3 6 1465 385 337 16 63 chr1 115354420 115354584 -81840848 + B3A SINE B2 18 176 -22 6 1465 525 80 0 0 chr1 115354584 115354659 -81840773 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1465 385 337 16 63 chr1 115354659 115354684 -81840748 + B3A SINE B2 177 197 -1 6 1465 761 240 15 54 chr1 115355315 115355518 -81839914 + B3 SINE B2 3 197 -19 6 1465 711 112 0 0 chr1 115355708 115355815 -81839617 + (TTTC)n Simple_repeat Simple_repeat 3 109 0 6 1465 576 366 54 10 chr1 115355823 115356027 -81839405 - B4 SINE B4 -77 215 3 6 1465 677 323 20 31 chr1 115356534 115356828 -81838604 + B4 SINE B4 2 292 0 6 1465 576 291 44 10 chr1 115357169 115357374 -81838058 - ID_B1 SINE B4 -12 212 1 6 1465 686 278 90 31 chr1 115357773 115358029 -81837403 - B4A SINE B4 -18 274 4 6 1465 216 320 0 39 chr1 115358046 115358150 -81837282 + CT-rich Low_complexity Low_complexity 2 101 0 6 1465 732 325 27 87 chr1 115358808 115359222 -81836210 + MTD LTR MaLR 17 405 -14 6 1465 3722 124 2 12 chr1 115360056 115360695 -81834737 - L1_Mus4 LINE L1 -472 5411 4780 6 1465 4383 134 8 2 chr1 115360677 115361625 -81833807 - L1_Mus4 LINE L1 -623 6013 5063 6 1465 3278 182 6 1 chr1 115361623 115362271 -81833161 + L1_Mus4 LINE L1 4414 5064 -819 6 1465 339 362 16 8 chr1 115362580 115362708 -81832724 + B3A SINE B2 32 160 -38 6 1465 247 356 17 17 chr1 115362776 115362893 -81832539 + B4A SINE B4 34 150 -142 6 1465 1127 143 16 21 chr1 115363155 115363348 -81832084 - B2_Mm2 SINE B2 0 195 4 6 1465 180 0 0 0 chr1 115363570 115363590 -81831842 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1465 411 106 0 0 chr1 115364037 115364103 -81831329 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1465 466 320 8 0 chr1 115364251 115364373 -81831059 + RSINE1 SINE B4 3 125 -40 6 1465 619 65 11 11 chr1 115364373 115364467 -81830965 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 1465 239 309 0 14 chr1 115365239 115365308 -81830124 + RMER30 DNA MER1_type 103 170 -32 6 1465 401 325 40 77 chr1 115365347 115365647 -81829785 + B4A SINE B4 4 292 0 6 1465 217 167 20 20 chr1 115365663 115365712 -81829720 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1465 288 170 0 0 chr1 115365719 115365772 -81829660 + GA-rich Low_complexity Low_complexity 4 56 0 6 1465 1140 214 47 41 chr1 115366570 115366855 -81828577 + MT2B LTR ERVL 69 507 -94 6 1465 279 386 0 0 chr1 115367122 115367210 -81828222 - Zaphod DNA Tip100 -3767 264 177 6 1465 741 261 101 67 chr1 115367286 115367644 -81827788 + ORR1D2 LTR MaLR 1 370 0 6 1465 226 333 78 39 chr1 115367653 115367756 -81827676 - Zaphod DNA Tip100 -3878 153 47 6 1465 268 274 176 64 chr1 115368412 115368537 -81826895 + B4A SINE B4 118 256 -36 6 1465 573 15 0 0 chr1 115368590 115368656 -81826776 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1465 441 0 0 0 chr1 115368656 115368704 -81826728 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1465 326 306 65 65 chr1 115369241 115369296 -81826136 - CYRA11_Mm Unknown Y-chromosome -171 446 392 6 1465 851 208 57 23 chr1 115369296 115369471 -81825961 + URR1B DNA MER1_type 3 183 -42 6 1465 2233 215 68 63 chr1 115369471 115370072 -81825360 + RMER19C LTR ERVK 1 604 -7 6 1465 336 299 106 92 chr1 115370357 115370542 -81824890 + ID_B1 SINE B4 1 192 -32 6 1465 3330 145 157 91 chr1 115370542 115371392 -81824040 + RMER17A2 LTR ERVK 1 906 0 6 1465 336 299 106 92 chr1 115371392 115371415 -81824017 + ID_B1 SINE B4 193 213 -11 6 1465 252 86 0 0 chr1 115371415 115371450 -81823982 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1465 189 0 0 0 chr1 115371475 115371496 -81823936 + (CAA)n Simple_repeat Simple_repeat 2 22 0 6 1465 21 0 0 0 chr1 115371963 115371984 -81823448 + AT_rich Low_complexity Low_complexity 1 21 0 6 1465 237 191 21 0 chr1 115371987 115372034 -81823398 - MIRb SINE MIR -8 260 213 6 1465 328 378 78 11 chr1 115372431 115372701 -81822731 + B4 SINE B4 3 290 -2 6 1465 3892 66 39 2 chr1 115374526 115375072 -81820360 - L1_Mus2 LINE L1 -206 6360 5795 6 1465 1106 104 0 0 chr1 115375074 115375237 -81820195 + L1_Mus2 LINE L1 6404 6566 0 6 1465 517 98 0 29 chr1 115375314 115375419 -81820013 + (CAGAGA)n Simple_repeat Simple_repeat 4 105 0 6 1465 651 266 50 10 chr1 115376701 115376902 -81818530 + B3 SINE B2 3 211 -5 6 1465 485 247 77 87 chr1 115377044 115377071 -81818361 - B3A SINE B2 -4 194 170 7 1465 426 69 0 0 chr1 115377071 115377129 -81818303 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1465 485 247 77 87 chr1 115377129 115377296 -81818136 - B3A SINE B2 -29 169 2 7 1465 246 160 0 0 chr1 115377466 115377516 -81817916 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1465 714 310 31 51 chr1 115377563 115377818 -81817614 - B4 SINE B4 -23 269 20 7 1465 363 235 0 10 chr1 115378338 115378437 -81816995 - L1_Rod LINE L1 -60 5787 5690 7 1465 661 296 21 101 chr1 115379482 115379768 -81815664 - RLTR26 LTR ERVK -212 430 168 7 1465 8040 29 0 18 chr1 115379875 115381416 -81814016 - L1Md_A LINE L1 0 6582 5069 7 1465 24 0 0 0 chr1 115381792 115381816 -81813616 + AT_rich Low_complexity Low_complexity 1 24 0 7 1465 227 250 0 26 chr1 115381905 115381983 -81813449 + T-rich Low_complexity Low_complexity 1 76 0 7 1465 261 125 0 0 chr1 115382004 115382052 -81813380 + Lx LINE L1 6528 6575 -79 7 1465 1146 284 47 11 chr1 115382220 115382540 -81812892 + ORR1D2 LTR MaLR 6 337 -57 7 1465 1118 82 0 0 chr1 115382540 115382687 -81812745 - B1_Mus2 SINE Alu 0 147 1 7 1465 391 337 99 58 chr1 115382687 115382719 -81812713 + ORR1D2 LTR MaLR 338 368 -26 7 1465 734 340 28 14 chr1 115382808 115383094 -81812338 + B4 SINE B4 3 292 0 7 1465 558 268 76 6 chr1 115383165 115383323 -81812109 - ORR1D1 LTR MaLR 0 374 206 7 1465 794 232 48 15 chr1 115383329 115383535 -81811897 - RLTR22_Mur LTR ERVK -2 1846 1634 7 1465 2791 174 94 62 chr1 115383880 115383980 -81811452 - RLTR22_Mur LTR ERVK -1101 747 662 7 1465 953 144 0 0 chr1 115383980 115384119 -81811313 + B1_Mus1 SINE Alu 2 140 -8 7 1465 2791 174 94 62 chr1 115384119 115384598 -81810834 - RLTR22_Mur LTR ERVK -1187 661 145 7 1465 309 51 0 0 chr1 115384598 115384637 -81810795 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1465 2791 174 94 62 chr1 115384637 115384780 -81810652 - RLTR22_Mur LTR ERVK -1704 144 1 7 1465 424 296 53 56 chr1 115384780 115384998 -81810434 - ORR1D1 LTR MaLR -147 212 6 7 1465 3180 56 8 13 chr1 115384998 115385396 -81810036 + MTA_Mm LTR MaLR 1 396 0 7 1465 234 318 0 15 chr1 115385507 115385574 -81809858 - B4A SINE B4 -221 71 6 7 1465 524 254 30 15 chr1 115386771 115386903 -81808529 - RLTR25A LTR ERVK 0 1103 970 7 1465 1209 203 27 24 chr1 115386878 115387184 -81808248 - RLTR25A LTR ERVK -232 796 438 7 1465 312 323 46 52 chr1 115387184 115387357 -81808075 - RLTR9B LTR ERVK -1 436 265 7 1465 1804 217 47 49 chr1 115387536 115387986 -81807446 - RLTR25A LTR ERVK -650 453 5 7 1465 848 74 8 0 chr1 115388016 115388137 -81807295 + (GGA)n Simple_repeat Simple_repeat 3 124 0 7 1465 945 119 0 0 chr1 115388139 115388273 -81807159 + B1_Mus1 SINE Alu 15 148 0 7 1465 297 0 0 0 chr1 115389003 115389036 -81806396 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1465 720 61 0 0 chr1 115389036 115389133 -81806299 + (GA)n Simple_repeat Simple_repeat 2 99 0 7 1465 8051 133 19 8 chr1 115389153 115390191 -81805241 + Lx2 LINE L1 5646 6696 -301 7 1465 504 0 0 0 chr1 115390191 115390247 -81805185 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 1465 8051 133 19 8 chr1 115390247 115390498 -81804934 + Lx2 LINE L1 6697 6956 -41 7 1465 3057 66 10 5 chr1 115390498 115390892 -81804540 - MTA_Mm LTR MaLR 0 396 1 7 1465 8051 133 19 8 chr1 115390892 115390936 -81804496 + Lx2 LINE L1 6957 6995 -2 7 1465 210 206 0 0 chr1 115391051 115391124 -81804308 + GA-rich Low_complexity Low_complexity 2 74 0 7 1465 649 319 67 14 chr1 115391611 115391894 -81803538 - RMER5 LTR ERV1 -162 372 75 7 1465 563 82 5 3 chr1 115391916 115391998 -81803434 - ORR1A2 LTR MaLR 0 327 257 7 1465 518 335 132 4 chr1 115392516 115392774 -81802658 - RMER15 LTR ERVL 0 575 285 7 1465 2317 139 35 49 chr1 115393411 115393836 -81801596 - RLTR23 LTR ERV1 0 430 12 7 1465 21 0 0 0 chr1 115393955 115393976 -81801456 + AT_rich Low_complexity Low_complexity 1 21 0 7 1465 1186 62 0 0 chr1 115394441 115394585 -81800847 + B1_Mm SINE Alu 1 144 -3 7 1465 190 0 32 32 chr1 115394585 115394616 -81800816 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1465 900 308 73 35 chr1 115394969 115395339 -81800093 - MTD LTR MaLR 0 419 36 7 1465 631 279 57 41 chr1 115396439 115396633 -81798799 + B3A SINE B2 1 197 -1 7 1465 29 28 0 0 chr1 115396747 115396783 -81798649 + AT_rich Low_complexity Low_complexity 1 36 0 7 1465 351 0 0 0 chr1 115396858 115396897 -81798535 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1465 1411 88 34 10 chr1 115396897 115397096 -81798336 - L1_Mus1 LINE L1 -6 6561 6356 7 1465 1337 57 0 0 chr1 115397096 115397271 -81798161 + L1Md_F2 LINE L1 6166 6340 -242 7 1465 503 219 1 19 chr1 115397271 115397385 -81798047 - B2_Mm2 SINE B2 -82 113 2 7 1465 837 0 0 0 chr1 115397578 115397671 -81797761 + (TTC)n Simple_repeat Simple_repeat 1 93 0 7 1465 3127 96 2 9 chr1 115397676 115398119 -81797313 - L1_Mus2 LINE L1 0 6566 6127 7 1465 378 263 11 0 chr1 115398203 115398298 -81797134 + RLTR22_Mur LTR ERVK 704 799 -1049 7 1465 524 197 25 17 chr1 115398373 115398492 -81796940 + RLTR22_Mur LTR ERVK 1588 1707 -141 7 1465 3489 25 0 0 chr1 115398555 115398951 -81796481 - MTA_Mm LTR MaLR 0 396 1 7 1465 237 295 8 54 chr1 115399472 115399601 -81795831 + (CATATA)n Simple_repeat Simple_repeat 3 125 0 7 1465 360 241 42 49 chr1 115399702 115399846 -81795586 - Lx7 LINE L1 -1889 5807 5665 7 1465 1335 272 36 8 chr1 115399850 115400210 -81795222 - ORR1D1 LTR MaLR 0 374 5 7 1465 369 0 0 0 chr1 115400399 115400440 -81794992 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1465 318 26 0 0 chr1 115400440 115400478 -81794954 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1465 432 336 48 104 chr1 115400511 115400800 -81794632 - MTE2a LTR MaLR -43 336 64 7 1465 248 255 0 0 chr1 115401176 115401227 -81794205 + B3 SINE B2 2 52 -164 7 1465 372 349 146 24 chr1 115401879 115402126 -81793306 - B4A SINE B4 -2 290 14 7 1465 315 0 0 0 chr1 115402127 115402162 -81793270 + (CTA)n Simple_repeat Simple_repeat 1 35 0 7 1465 343 351 29 18 chr1 115402740 115402911 -81792521 + MIRb SINE MIR 87 259 -9 7 1465 711 289 62 24 chr1 115402913 115403122 -81792310 + ID_B1 SINE B4 1 217 -7 7 1465 384 125 0 0 chr1 115403565 115403629 -81791803 + (GGA)n Simple_repeat Simple_repeat 3 66 0 7 1465 669 47 0 0 chr1 115403887 115403972 -81791460 + (CATA)n Simple_repeat Simple_repeat 2 86 0 7 1465 525 104 0 0 chr1 115403973 115404050 -81791382 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 7 1465 2057 99 7 3 chr1 115404091 115404395 -81791037 - L1_Mus2 LINE L1 -134 6432 6128 7 1465 984 72 7 0 chr1 115404397 115404535 -81790897 + L1_Mus2 LINE L1 6426 6564 -2 7 1465 25 51 0 0 chr1 115404732 115404771 -81790661 + AT_rich Low_complexity Low_complexity 1 39 0 7 1465 261 339 77 88 chr1 115404879 115405060 -81790372 + B4 SINE B4 42 220 -72 7 1465 1106 82 7 0 chr1 115405071 115405218 -81790214 + B1_Mus1 SINE Alu 1 148 0 7 1465 216 44 0 82 chr1 115405218 115405267 -81790165 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 7 1465 251 336 82 38 chr1 115405524 115405682 -81789750 + MLT1J2 LTR MaLR 64 228 -220 7 1465 481 320 66 69 chr1 115405899 115406188 -81789244 + B4 SINE B4 1 288 -4 7 1465 4198 29 0 0 chr1 115406472 115406954 -81788478 - LTRIS_Mm LTR ERV1 0 482 1 7 1465 186 71 0 0 chr1 115407118 115407146 -81788286 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1465 235 284 92 92 chr1 115407519 115407639 -81787793 - MTEa LTR MaLR -9 370 251 7 1465 2304 204 11 9 chr1 115408030 115408475 -81786957 - RLTR20B2 LTR ERVK -114 446 1 7 1465 802 174 73 5 chr1 115408475 115408694 -81786738 - MYSERV16_I-int LTR ERVK -1 2325 2092 7 1465 418 296 82 78 chr1 115408705 115408950 -81786482 + MTE2a LTR MaLR 134 379 0 7 1465 273 274 0 45 chr1 115409362 115409450 -81785982 + CT-rich Low_complexity Low_complexity 1 84 0 7 1465 306 250 168 77 chr1 115409451 115409594 -81785838 - HAL1-3A_ME LINE L1 -421 2437 2282 7 1465 1322 158 41 4 chr1 115411319 115411561 -81783871 - RLTR40 LTR ERVK -534 283 33 7 1465 412 311 97 51 chr1 115412288 115412525 -81782907 - MER31A LTR ERV1 -23 443 196 7 1465 1159 82 15 7 chr1 115412737 115412941 -81782491 - L1Md_F2 LINE L1 -710 5479 5280 7 1465 680 25 0 0 chr1 115412922 115413003 -81782429 + L1Md_F2 LINE L1 5506 5586 -297 7 1465 8049 47 1 2 chr1 115413003 115413998 -81781434 + L1Md_F2 LINE L1 5587 6580 -2 7 1465 211 290 21 35 chr1 115414045 115414188 -81781244 + (CATA)n Simple_repeat Simple_repeat 2 142 0 7 1465 512 214 10 0 chr1 115414237 115414340 -81781092 - MTD LTR MaLR 0 379 276 7 1465 675 301 28 14 chr1 115414353 115414565 -81780867 - RLTR18 LTR ERVK 0 616 402 7 1465 180 355 51 26 chr1 115414598 115414676 -81780756 - MER5A DNA MER1_type -18 171 92 7 1465 682 343 40 4 chr1 115414689 115414964 -81780468 - RMER15 LTR ERVL -14 561 277 7 1465 228 217 169 67 chr1 115414965 115415054 -81780378 - RMER15 LTR ERVL -414 161 64 7 1465 480 35 0 0 chr1 115415116 115415174 -81780258 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 7 1465 543 250 8 0 chr1 115415395 115415515 -81779917 - MTD LTR MaLR -298 121 1 7 1465 504 237 129 43 chr1 115415564 115415727 -81779705 - RMER15 LTR ERVL -43 532 356 7 1465 315 290 77 10 chr1 115416027 115416222 -81779210 - L1MA6 LINE L1 -38 6262 6055 7 1465 21 0 0 0 chr1 115416356 115416377 -81779055 + AT_rich Low_complexity Low_complexity 1 21 0 7 1465 1801 220 58 8 chr1 115416408 115416802 -81778630 + MTC LTR MaLR 1 414 -7 7 1465 215 203 68 0 chr1 115417119 115417178 -81778254 - B3 SINE B2 -67 149 87 7 1465 548 14 14 0 chr1 115417264 115417333 -81778099 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 7 1465 2662 235 21 11 chr1 115417333 115417893 -81777539 - RLTR20D LTR ERVK -2 566 1 7 1465 3628 163 59 18 chr1 115417893 115418724 -81776708 - MYSERV16_I-int LTR ERVK 0 2326 1462 7 1465 2139 213 44 31 chr1 115418733 115419623 -81775809 - MYSERV16_I-int LTR ERVK -1027 1299 277 7 1465 394 167 29 29 chr1 115419659 115419764 -81775668 - MYSERV16_I-int LTR ERVK -2221 105 1 7 1465 1551 161 18 11 chr1 115419831 115420114 -81775318 - Lx2 LINE L1 0 6997 6713 7 1465 1481 33 66 0 chr1 115420206 115420387 -81775045 + B2_Mm1a SINE B2 1 193 0 7 1465 505 350 0 7 chr1 115420803 115420944 -81774488 + RSINE1 SINE B4 2 141 -24 7 1465 312 27 0 0 chr1 115420955 115420992 -81774440 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1465 510 17 0 0 chr1 115421004 115421063 -81774369 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 7 1465 1419 104 26 0 chr1 115421186 115421416 -81774016 + Lx LINE L1 5789 6024 -630 7 1465 329 393 7 28 chr1 115421848 115421992 -81773440 - ID_B1 SINE B4 -3 221 81 7 1465 603 27 0 0 chr1 115422074 115422147 -81773285 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1465 699 222 0 0 chr1 115422232 115422367 -81773065 - ORR1C1 LTR MaLR -2 376 242 7 1465 1336 206 22 47 chr1 115422378 115422821 -81772611 - RLTR25A LTR ERVK -4 1099 560 8 1465 558 282 88 8 chr1 115423169 115423380 -81772052 + MTE2b LTR MaLR 153 379 0 8 1465 188 222 0 69 chr1 115423544 115423602 -81771830 + L3 LINE CR1 2441 2494 -1995 8 1465 761 286 85 7 chr1 115423605 115423876 -81771556 + B4A SINE B4 1 292 0 8 1465 243 61 0 0 chr1 115423877 115423910 -81771522 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1465 511 252 26 0 chr1 115424596 115424711 -81770721 + B1F SINE Alu 13 130 -19 8 1465 261 330 0 34 chr1 115424736 115424855 -81770577 + GA-rich Low_complexity Low_complexity 6 120 0 8 1465 2297 230 91 8 chr1 115425078 115425818 -81769614 + Lx7 LINE L1 4994 5794 -86 8 1465 3114 258 60 70 chr1 115426091 115427627 -81767805 + L1VL4 LINE L1 895 2339 -3547 8 1465 261 98 0 0 chr1 115427627 115427668 -81767764 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1465 3114 258 75 84 chr1 115427668 115428594 -81766838 + L1VL4 LINE L1 2340 3344 -2542 8 1465 210 71 0 0 chr1 115428594 115428622 -81766810 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1465 3114 258 75 84 chr1 115428622 115428925 -81766507 + L1VL4 LINE L1 3345 3648 -2238 8 1465 2303 241 81 17 chr1 115428924 115429743 -81765689 + Lx4B LINE L1 6042 7005 -53 8 1465 3532 169 55 12 chr1 115429743 115430382 -81765050 - RLTR17 LTR ERVK -26 666 1 8 1465 1483 227 42 56 chr1 115430388 115430906 -81764526 + Lx7 LINE L1 5782 6292 -1404 8 1465 328 215 34 0 chr1 115430947 115431029 -81764403 - MTE2a LTR MaLR -284 95 4 8 1465 665 370 94 25 chr1 115431275 115431763 -81763669 - MT2A LTR ERVL -8 525 4 8 1465 610 136 19 19 chr1 115432248 115432405 -81763027 + T-rich Low_complexity Low_complexity 4 160 0 8 1465 334 292 59 37 chr1 115432405 115432421 -81763011 - ID_B1 SINE B4 0 224 87 8 1465 578 244 25 0 chr1 115432421 115432540 -81762892 - B1_Mur2 SINE Alu -22 127 6 8 1465 854 274 175 24 chr1 115432607 115433030 -81762402 - RMER5 LTR ERV1 -10 524 38 8 1465 455 340 62 12 chr1 115433662 115433823 -81761609 + 7SK RNA RNA 1 169 -162 8 1465 1263 234 19 0 chr1 115434630 115434895 -81760537 - ORR1C1 LTR MaLR 0 378 109 8 1465 24 0 0 0 chr1 115434895 115434919 -81760513 + AT_rich Low_complexity Low_complexity 1 24 0 8 1465 618 163 23 23 chr1 115434976 115435152 -81760280 + (TATG)n Simple_repeat Simple_repeat 4 179 0 8 1465 3372 160 44 38 chr1 115435165 115435911 -81759521 - RMER17A LTR ERVK 0 751 1 8 1465 283 198 40 0 chr1 115435947 115436048 -81759384 + (TATG)n Simple_repeat Simple_repeat 1 105 0 8 1465 423 358 0 8 chr1 115436074 115436198 -81759234 + MTEa LTR MaLR 8 130 -249 8 1465 888 308 31 35 chr1 115437079 115437368 -81758064 + B4 SINE B4 5 292 0 8 1465 411 155 0 0 chr1 115437368 115437452 -81757980 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1465 3316 48 2 2 chr1 115438613 115439009 -81756423 + MTA_Mm LTR MaLR 1 396 0 8 1465 446 279 14 35 chr1 115439066 115439211 -81756221 - B1F2 SINE Alu 0 149 8 8 1465 906 279 35 97 chr1 115439533 115439937 -81755495 + MTE2a LTR MaLR 1 379 0 8 1465 968 292 34 122 chr1 115441065 115441475 -81753957 + MTE2a LTR MaLR 1 374 -5 8 1465 342 328 146 12 chr1 115441618 115441865 -81753567 + B4A SINE B4 1 280 -12 8 1465 444 37 0 0 chr1 115441892 115441946 -81753486 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1465 771 243 93 103 chr1 115442521 115442833 -81752599 - MTE2a LTR MaLR 0 379 71 8 1465 24 32 0 0 chr1 115443019 115443050 -81752382 + AT_rich Low_complexity Low_complexity 1 31 0 8 1465 363 307 91 57 chr1 115443059 115443235 -81752197 - B3A SINE B2 -16 182 1 8 1465 1119 147 0 0 chr1 115443612 115443789 -81751643 - Lx2 LINE L1 -302 5581 5405 8 1465 4991 135 33 0 chr1 115443796 115444678 -81750754 + Lx2 LINE L1 5587 6497 -500 8 1465 722 197 211 81 chr1 115445462 115445802 -81749630 - ORR1A4 LTR MaLR 0 346 6 8 1465 374 396 22 9 chr1 115445819 115446046 -81749386 - B4 SINE B4 -61 231 2 8 1465 387 309 48 65 chr1 115446490 115446784 -81748648 + B4A SINE B4 1 289 -3 8 1465 743 240 6 25 chr1 115447376 115447534 -81747898 + B4 SINE B4 5 159 -133 8 1465 275 233 68 0 chr1 115447531 115447604 -81747828 + MTEb LTR MaLR 296 373 -6 8 1465 380 248 2 0 chr1 115448620 115448715 -81746717 + ORR1D1 LTR MaLR 1 96 -274 8 1465 240 184 0 0 chr1 115448744 115448793 -81746639 + CT-rich Low_complexity Low_complexity 2 50 0 8 1465 331 260 82 28 chr1 115448793 115448941 -81746491 + ORR1D1 LTR MaLR 205 379 0 8 1465 204 40 0 0 chr1 115448998 115449023 -81746409 + (TTTAA)n Simple_repeat Simple_repeat 4 28 0 8 1465 509 295 42 47 chr1 115449209 115449375 -81746057 + B3A SINE B2 8 175 -23 8 1465 342 67 0 0 chr1 115449375 115449420 -81746012 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1465 509 295 42 47 chr1 115449420 115449445 -81745987 + B3A SINE B2 176 197 -1 8 1465 317 176 64 18 chr1 115449471 115449581 -81745851 - Lx9 LINE L1 -1 7643 7529 8 1465 219 88 0 0 chr1 115449632 115449666 -81745766 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 1465 414 0 0 0 chr1 115449745 115449791 -81745641 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1465 992 247 62 72 chr1 115449798 115450230 -81745202 - Lx9 LINE L1 -171 7473 7046 8 1465 320 280 0 85 chr1 115450241 115450370 -81745062 + Lx9 LINE L1 6916 7033 -611 8 1465 588 29 0 0 chr1 115450573 115450643 -81744789 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1465 189 0 0 0 chr1 115450773 115450794 -81744638 + (CAAAT)n Simple_repeat Simple_repeat 1 21 0 8 1465 264 286 115 35 chr1 115451314 115451414 -81744018 + B1F1 SINE Alu 6 112 -8 8 1465 592 319 98 10 chr1 115451421 115451614 -81743818 + B4 SINE B4 8 217 -75 8 1465 965 281 31 4 chr1 115452128 115452353 -81743079 + B4A SINE B4 2 232 -60 8 1465 501 58 0 0 chr1 115452431 115452500 -81742932 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1465 319 306 30 30 chr1 115452517 115452618 -81742814 - L1ME2z LINE L1 -130 6049 5949 8 1465 765 221 103 22 chr1 115452651 115452836 -81742596 + B3 SINE B2 1 200 -16 8 1465 4716 116 83 74 chr1 115452838 115453734 -81741698 + RMER17A2 LTR ERVK 3 906 0 8 1465 344 103 17 0 chr1 115453817 115453875 -81741557 + (TGAA)n Simple_repeat Simple_repeat 4 62 0 8 1465 225 297 54 0 chr1 115453884 115453958 -81741474 - B3A SINE B2 -117 81 4 8 1465 465 302 6 48 chr1 115453978 115454145 -81741287 - RSINE1 SINE B4 -4 161 2 8 1465 645 279 47 22 chr1 115454150 115454428 -81741004 - L1ME2z LINE L1 -557 5887 5603 8 1465 785 279 18 18 chr1 115454453 115454672 -81740760 - RMER15 LTR ERVL 0 575 357 8 1465 261 0 0 0 chr1 115454677 115454706 -81740726 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1465 281 311 28 49 chr1 115455216 115455358 -81740074 - RMER15 LTR ERVL -436 139 1 8 1465 541 332 23 58 chr1 115455793 115456052 -81739380 - RLTR26 LTR ERVK -225 417 168 8 1465 1204 205 50 0 chr1 115456273 115456551 -81738881 - Lx9 LINE L1 -141 7503 7212 8 1465 356 326 0 11 chr1 115456555 115456648 -81738784 + B3 SINE B2 117 208 -8 8 1465 748 231 0 0 chr1 115456689 115456836 -81738596 - B1_Mur2 SINE Alu -2 147 1 8 1465 237 258 40 32 chr1 115456868 115456992 -81738440 + Lx8 LINE L1 7349 7473 0 8 1465 324 263 104 79 chr1 115457005 115457264 -81738168 - MTD LTR MaLR 0 419 86 8 1465 1432 40 0 0 chr1 115457264 115457441 -81737991 + L1_Mus1 LINE L1 6311 6487 -80 8 1465 700 181 50 7 chr1 115457441 115457580 -81737852 + B1_Mur2 SINE Alu 5 149 0 8 1465 532 90 0 0 chr1 115457749 115457827 -81737605 + L1_Mus2 LINE L1 6489 6566 0 8 1465 322 322 11 0 chr1 115457850 115457937 -81737495 - MTD LTR MaLR -299 120 33 8 1465 189 254 0 83 chr1 115458041 115458101 -81737331 - L2c LINE L2 -65 3322 3268 8 1465 208 230 66 26 chr1 115458120 115458196 -81737236 + L2a LINE L2 3262 3340 -86 8 1465 669 245 7 0 chr1 115458351 115458490 -81736942 + B1F SINE Alu 5 144 -5 8 1465 529 289 52 32 chr1 115459500 115459654 -81735778 + ID_B1 SINE B4 1 157 -67 8 1465 586 315 73 29 chr1 115459654 115459860 -81735572 + B3 SINE B2 2 216 0 8 1465 358 198 5 83 chr1 115459983 115460176 -81735256 + CT-rich Low_complexity Low_complexity 1 178 0 8 1465 1066 75 17 17 chr1 115460182 115460359 -81735073 + (TTC)n Simple_repeat Simple_repeat 3 179 0 8 1465 306 0 0 0 chr1 115460359 115460393 -81735039 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1465 277 244 17 97 chr1 115460533 115460645 -81734787 - PB1 SINE Alu -2 125 17 8 1465 586 315 73 29 chr1 115460745 115460951 -81734481 + B3 SINE B2 2 216 0 8 1465 258 273 19 49 chr1 115461074 115461236 -81734196 + CT-rich Low_complexity Low_complexity 2 158 0 8 1465 366 48 31 16 chr1 115461242 115461265 -81734167 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 1465 996 81 23 17 chr1 115461265 115461441 -81733991 + (TTC)n Simple_repeat Simple_repeat 3 179 0 8 1465 366 48 31 16 chr1 115461441 115461481 -81733951 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1465 264 257 17 97 chr1 115461621 115461733 -81733699 - PB1 SINE Alu -2 125 17 8 1465 503 340 80 0 chr1 115461833 115461983 -81733449 + B3 SINE B2 2 163 -53 8 1465 7055 42 1 0 chr1 115462618 115463465 -81731967 + L1Md_F2 LINE L1 5721 6568 -14 8 1465 22 0 0 0 chr1 115463466 115463488 -81731944 + AT_rich Low_complexity Low_complexity 1 22 0 8 1465 459 0 0 0 chr1 115464020 115464071 -81731361 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1465 249 119 0 0 chr1 115464154 115464196 -81731236 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1465 475 406 14 38 chr1 115464226 115464518 -81730914 - B4A SINE B4 0 292 8 8 1465 24 0 0 0 chr1 115464528 115464552 -81730880 + AT_rich Low_complexity Low_complexity 1 24 0 8 1465 495 333 13 25 chr1 115464567 115464724 -81730708 + RSINE1 SINE B4 9 163 -2 8 1465 366 123 0 0 chr1 115464733 115464790 -81730642 + (TAAG)n Simple_repeat Simple_repeat 3 59 0 8 1465 2935 101 23 25 chr1 115464802 115465280 -81730152 - RLTR44C LTR ERVK -25 477 1 8 1465 426 79 0 0 chr1 115465280 115465343 -81730089 + (CATA)n Simple_repeat Simple_repeat 2 64 0 8 1465 282 361 8 32 chr1 115465471 115465594 -81729838 + MTEa LTR MaLR 1 120 -259 9 1465 207 215 0 0 chr1 115465715 115465780 -81729652 + (CTG)n Simple_repeat Simple_repeat 1 65 0 9 1465 216 0 0 0 chr1 115465784 115465808 -81729624 + (ATG)n Simple_repeat Simple_repeat 3 26 0 9 1465 768 263 22 22 chr1 115465829 115466008 -81729424 + MT2A LTR ERVL 279 457 -76 9 1465 1038 144 0 0 chr1 115466025 115466205 -81729227 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 1465 553 307 21 26 chr1 115466310 115466544 -81728888 - Charlie5 DNA MER1_type -174 2450 2218 9 1465 331 273 0 0 chr1 115466700 115466777 -81728655 - PB1D10 SINE Alu 0 117 41 9 1465 54 0 0 0 chr1 115467369 115467423 -81728009 + AT_rich Low_complexity Low_complexity 1 54 0 9 1465 6970 117 7 2 chr1 115467423 115468915 -81726517 + L1_Mus4 LINE L1 5133 6631 -5 9 1465 69 41 0 0 chr1 115468915 115469012 -81726420 + AT_rich Low_complexity Low_complexity 1 97 0 9 1465 977 247 47 16 chr1 115469041 115469345 -81726087 + ORR1B1 LTR MaLR 1 367 0 9 1465 21 0 0 0 chr1 115469713 115469734 -81725698 + AT_rich Low_complexity Low_complexity 1 21 0 9 1465 631 245 0 0 chr1 115469828 115469967 -81725465 - B1_Mur4 SINE Alu -7 143 5 9 1465 365 344 0 21 chr1 115470007 115470102 -81725330 + RSINE1 SINE B4 60 152 -13 9 1465 516 32 0 0 chr1 115470105 115470167 -81725265 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 9 1465 2136 204 282 88 chr1 115471130 115471989 -81723443 - RLTR25B LTR ERVK -1 1027 3 9 1465 3280 191 44 24 chr1 115471989 115472650 -81722782 + RLTR25A LTR ERVK 1 674 -429 9 1465 206 125 21 0 chr1 115472650 115472698 -81722734 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 9 1465 1107 62 7 0 chr1 115472723 115472867 -81722565 + B1_Mm SINE Alu 2 146 -1 9 1465 225 83 0 0 chr1 115472877 115472913 -81722519 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1465 582 232 134 20 chr1 115472954 115473156 -81722276 + RLTR25A LTR ERVK 629 853 -175 9 1465 472 214 10 0 chr1 115473486 115473584 -81721848 + RLTR25A LTR ERVK 1005 1103 0 9 1465 284 78 0 38 chr1 115474001 115474054 -81721378 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 9 1465 1082 111 12 0 chr1 115474061 115474233 -81721199 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 9 1466 507 239 0 6 chr1 115475238 115475355 -81720077 - ORR1D2 LTR MaLR -2 377 255 9 1466 644 326 11 0 chr1 115475350 115475528 -81719904 + B3 SINE B2 7 186 -30 9 1466 622 317 92 4 chr1 115475571 115475799 -81719633 - ORR1D2 LTR MaLR -118 252 5 9 1466 391 209 25 6 chr1 115476661 115476689 -81718743 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1466 564 15 0 0 chr1 115476689 115476754 -81718678 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 9 1466 391 209 25 6 chr1 115476754 115476884 -81718548 + (TA)n Simple_repeat Simple_repeat 1 134 0 9 1466 28 79 0 0 chr1 115476894 115476957 -81718475 + AT_rich Low_complexity Low_complexity 1 63 0 9 1466 460 349 8 0 chr1 115476959 115477088 -81718344 + B1_Mur1 SINE Alu 1 130 -19 9 1466 553 304 33 33 chr1 115477208 115477419 -81718013 + B4A SINE B4 21 231 -61 9 1466 330 349 36 102 chr1 115477409 115477575 -81717857 + RSINE1 SINE B4 10 164 -1 9 1466 35 41 0 0 chr1 115477976 115478025 -81717407 + AT_rich Low_complexity Low_complexity 1 49 0 9 1466 506 298 99 0 chr1 115478172 115478343 -81717089 - B3A SINE B2 -5 193 6 9 1466 1172 250 72 6 chr1 115478439 115478757 -81716675 + MTEb LTR MaLR 1 339 -40 9 1466 1260 89 0 0 chr1 115479116 115479296 -81716136 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1466 528 16 0 0 chr1 115479299 115479360 -81716072 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 9 1466 401 105 0 0 chr1 115480156 115480213 -81715219 + MTEb LTR MaLR 320 376 -3 9 1466 563 266 21 34 chr1 115480422 115480746 -81714686 + L1_Mur1 LINE L1 17 529 -6453 9 1466 520 282 80 86 chr1 115481303 115481676 -81713756 + MTEa LTR MaLR 5 375 -4 9 1466 796 299 64 0 chr1 115481688 115481939 -81713493 + B4 SINE B4 1 267 -25 9 1466 552 56 0 0 chr1 115481939 115482011 -81713421 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 1466 816 285 136 1 chr1 115482051 115482343 -81713089 - MTEb LTR MaLR -12 367 38 9 1466 989 151 0 11 chr1 115482345 115482526 -81712906 + CT-rich Low_complexity Low_complexity 2 180 0 9 1466 1249 178 34 11 chr1 115482534 115482796 -81712636 - Lx LINE L1 -2 6652 6385 9 1466 340 342 34 51 chr1 115482850 115482967 -81712465 - B1_Mur1 SINE Alu -32 117 3 9 1466 555 310 28 15 chr1 115483267 115483434 -81711998 + B3A SINE B2 36 203 -13 9 1466 737 328 50 29 chr1 115483576 115483855 -81711577 + B4 SINE B4 8 292 0 9 1466 308 292 0 28 chr1 115484095 115484204 -81711228 + GA-rich Low_complexity Low_complexity 2 107 0 9 1466 1659 210 46 31 chr1 115484310 115484698 -81710734 - ORR1B1 LTR MaLR 0 394 1 9 1466 1286 259 83 68 chr1 115485095 115485418 -81710014 - MTD LTR MaLR -14 405 70 9 1466 620 259 14 7 chr1 115485418 115485566 -81709866 - B1_Mur2 SINE Alu 0 149 1 9 1466 1286 259 83 68 chr1 115485566 115485639 -81709793 - MTD LTR MaLR -350 69 3 9 1466 309 253 25 12 chr1 115487027 115487107 -81708325 - MTE2b LTR MaLR -298 81 1 9 1466 3317 215 14 8 chr1 115487544 115488262 -81707170 + Lx4B LINE L1 6327 7048 -10 9 1466 268 329 0 0 chr1 115488323 115488396 -81707036 + Lx8 LINE L1 7157 7229 -244 9 1466 2133 159 29 5 chr1 115488853 115489265 -81706167 + BGLII_Mus LTR ERVK 1 422 0 9 1466 521 172 30 0 chr1 115489357 115489456 -81705976 + B1_Mur1 SINE Alu 41 142 -7 9 1466 23 54 0 0 chr1 115489608 115489645 -81705787 + AT_rich Low_complexity Low_complexity 1 37 0 9 1466 286 376 0 17 chr1 115490237 115490356 -81705076 + RSINE1 SINE B4 47 163 -2 9 1466 486 235 134 36 chr1 115490380 115490574 -81704858 + B3 SINE B2 4 216 0 9 1466 239 41 39 39 chr1 115491254 115491305 -81704127 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1466 1728 184 34 83 chr1 115491503 115491888 -81703544 - ORR1B1 LTR MaLR -9 385 20 9 1466 441 0 0 0 chr1 115491928 115491977 -81703455 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1466 705 304 8 40 chr1 115491987 115492361 -81703071 + L1M2 LINE L1 3323 3684 -2459 9 1466 414 344 126 0 chr1 115492371 115492522 -81702910 + B3A SINE B2 1 170 -28 9 1466 360 0 0 0 chr1 115492522 115492562 -81702870 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1466 5190 156 15 45 chr1 115492647 115494652 -81700780 + L1VL2 LINE L1 2 1883 -1815 9 1466 7993 158 16 26 chr1 115494630 115496297 -81699135 + L1_Mm LINE L1 3054 4704 -1179 9 1466 289 111 0 0 chr1 115496297 115496342 -81699090 + L1_Mm LINE L1 4468 4512 -1371 9 1466 429 158 21 10 chr1 115496357 115496453 -81698979 - L1_Mur2 LINE L1 -513 5364 5268 9 1466 2350 180 0 4 chr1 115496465 115496918 -81698514 + L1_Mm LINE L1 4519 4969 -914 9 1466 4154 110 9 14 chr1 115496919 115497565 -81697867 + L1_Mus3 LINE L1 5994 6636 -2 9 1466 1710 221 34 8 chr1 115497659 115498043 -81697389 - ORR1B1 LTR MaLR 0 394 1 9 1466 465 50 0 0 chr1 115498316 115498376 -81697056 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1466 251 246 0 16 chr1 115498383 115498445 -81696987 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 9 1466 349 291 87 28 chr1 115498546 115498832 -81696600 + L1M2 LINE L1 3874 4176 -1967 9 1466 1598 246 3 3 chr1 115498899 115499237 -81696195 - RMER6D LTR ERVK 0 720 383 9 1466 6524 4 0 0 chr1 115499238 115500000 -81695432 + L1_Mm LINE L1 4405 5166 -717 9 1466 3583 5 0 0 chr1 115500000 115500420 -81695012 + L1Md_A LINE L1 5167 5586 -297 1 1466 8989 6 0 0 chr1 115500420 115501447 -81693985 + L1Md_A LINE L1 5587 6582 0 1 1466 1380 185 110 32 chr1 115501488 115501834 -81693598 - RMER6D LTR ERVK -345 375 3 2 1466 611 237 120 26 chr1 115501961 115502152 -81693280 + MTC LTR MaLR 1 209 -212 3 1466 1597 113 4 38 chr1 115502164 115502362 -81693070 - Lx LINE L1 -390 6264 6075 4 1466 6495 34 1 4 chr1 115502362 115503128 -81692304 - L1Md_F2 LINE L1 0 6582 5819 5 1466 1597 113 4 38 chr1 115503128 115503196 -81692236 - Lx LINE L1 -580 6074 6007 4 1466 806 170 11 39 chr1 115503196 115503374 -81692058 + Lx LINE L1 6482 6654 0 6 1466 965 226 64 32 chr1 115503389 115503608 -81691824 + MTC LTR MaLR 196 421 0 3 1466 940 313 80 10 chr1 115503545 115503932 -81691500 - MTD LTR MaLR -3 416 3 7 1466 393 22 0 0 chr1 115504167 115504213 -81691219 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1466 528 165 0 0 chr1 115504292 115504407 -81691025 + GA-rich Low_complexity Low_complexity 2 116 0 9 1466 1852 266 53 12 chr1 115504786 115505387 -81690045 - Lx4B LINE L1 -8 7050 6437 1 1466 574 195 23 0 chr1 115505389 115505517 -81689915 - Lx4B LINE L1 -1223 5835 5705 1 1466 28239 83 9 36 chr1 115505527 115510639 -81684793 + L1Md_F3 LINE L1 611 5584 -299 1 1466 7630 51 20 3 chr1 115510641 115511622 -81683810 + L1Md_F3 LINE L1 5587 6584 0 1 1466 716 243 8 65 chr1 115511623 115511885 -81683547 - Lx4B LINE L1 -165 5721 5488 1 1466 6753 84 10 23 chr1 115511896 115513044 -81682388 - L1_Mus1 LINE L1 -1 6566 5428 1 1466 2391 142 8 3 chr1 115513049 115513438 -81681994 - BGLII LTR ERVK -30 391 1 1 1466 1775 206 154 14 chr1 115513438 115514128 -81681304 - MYSERV16_I-int LTR ERVK 0 2326 1541 1 1466 6071 30 0 0 chr1 115514130 115514874 -81680558 + L1Md_F3 LINE L1 5648 6391 -193 1 1466 195 49 73 0 chr1 115514876 115514917 -81680515 + (TCTCCC)n Simple_repeat Simple_repeat 3 46 0 1 1466 315 195 0 61 chr1 115514917 115514933 -81680499 - RMER3D-int LTR ERVK -5143 2101 2086 1 1466 1467 34 0 0 chr1 115514933 115515110 -81680322 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 1 1466 608 78 48 13 chr1 115515110 115515213 -81680219 - RMER3D-int LTR ERVK -2250 592 491 1 1466 2851 101 12 0 chr1 115515628 115516044 -81679388 - BGLII LTR ERVK 0 421 1 1 1466 3703 182 34 85 chr1 115516044 115517107 -81678325 - Lx4B LINE L1 -392 5485 4477 1 1466 3718 35 5 2 chr1 115517344 115517779 -81677653 + RLTR10C LTR ERVK 1 436 0 1 1466 63811 19 0 7 chr1 115517779 115525412 -81670020 + MMERVK10C-int LTR ERVK 1 7581 0 1 1466 3731 32 5 2 chr1 115525412 115525847 -81669585 + RLTR10C LTR ERVK 1 436 0 1 1466 416 198 21 0 chr1 115525855 115525951 -81669481 - Lx8 LINE L1 -656 6817 6720 2 1466 1128 245 86 20 chr1 115526128 115526447 -81668985 - MTD LTR MaLR -14 405 74 2 1466 1389 61 0 0 chr1 115526447 115526627 -81668805 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1466 1128 249 103 18 chr1 115526627 115526648 -81668784 - MTD LTR MaLR -346 73 48 2 1466 663 13 0 0 chr1 115526648 115526724 -81668708 + (TTC)n Simple_repeat Simple_repeat 3 78 0 2 1466 615 183 0 0 chr1 115526715 115526846 -81668586 + CT-rich Low_complexity Low_complexity 2 132 0 2 1466 767 231 0 0 chr1 115526857 115527000 -81668432 - B1_Mus1 SINE Alu 0 148 6 2 1466 416 311 46 33 chr1 115526863 115527016 -81668416 - ID_B1 SINE B4 -6 218 64 2 1466 460 337 105 62 chr1 115527415 115527719 -81667713 + RLTR26 LTR ERVK 101 417 -225 2 1466 593 297 58 24 chr1 115528804 115529011 -81666421 - B4 SINE B4 -69 223 10 2 1466 428 279 136 45 chr1 115529350 115529504 -81665928 + MT2A LTR ERVL 1 168 -386 2 1466 277 253 20 31 chr1 115529642 115529740 -81665692 + T-rich Low_complexity Low_complexity 5 101 0 3 1466 180 0 0 0 chr1 115530817 115530837 -81664595 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1466 375 78 0 0 chr1 115531480 115531531 -81663901 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1466 630 292 47 6 chr1 115531604 115531773 -81663659 + ID_B1 SINE B4 34 209 -15 3 1466 510 239 35 17 chr1 115531955 115532070 -81663362 + B1_Mur1 SINE Alu 26 142 -7 3 1466 355 313 47 2 chr1 115532289 115532410 -81663022 + B3 SINE B2 2 125 -70 3 1466 242 227 15 15 chr1 115532570 115532637 -81662795 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 1466 373 298 0 0 chr1 115532920 115533004 -81662428 + B3 SINE B2 2 85 -131 3 1466 332 72 0 18 chr1 115533419 115533476 -81661956 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1466 509 308 115 6 chr1 115533665 115533822 -81661610 + B3A SINE B2 4 177 -21 3 1466 507 259 93 50 chr1 115533842 115534218 -81661214 + Lx7 LINE L1 5477 5826 -465 4 1466 1039 254 71 122 chr1 115534391 115534785 -81660647 - MTE2b LTR MaLR 0 379 6 4 1466 306 288 16 16 chr1 115535455 115535582 -81659850 - Lx9 LINE L1 -603 7041 6915 4 1466 1050 276 25 33 chr1 115535597 115535964 -81659468 + Lx9 LINE L1 7054 7417 -227 4 1466 612 0 0 0 chr1 115536023 115536091 -81659341 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1466 23 0 0 0 chr1 115536344 115536367 -81659065 + AT_rich Low_complexity Low_complexity 1 23 0 4 1466 378 316 137 0 chr1 115536388 115536556 -81658876 - B3A SINE B2 -7 191 1 4 1466 470 223 75 23 chr1 115536802 115536935 -81658497 - ORR1D2 LTR MaLR -2 368 229 4 1466 789 11 0 0 chr1 115536935 115537025 -81658407 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1466 442 248 96 60 chr1 115537025 115537173 -81658259 - ORR1D2 LTR MaLR -148 226 1 4 1466 378 224 0 0 chr1 115538164 115538240 -81657192 - MTEb LTR MaLR -8 371 296 4 1466 711 239 18 24 chr1 115538229 115538396 -81657036 - B4 SINE B4 -124 168 3 4 1466 675 311 17 17 chr1 115539052 115539284 -81656148 - B4A SINE B4 -59 233 2 5 1466 481 308 23 15 chr1 115539776 115539907 -81655525 + B4 SINE B4 99 230 -62 5 1466 468 287 80 14 chr1 115539907 115540045 -81655387 + B1_Mur2 SINE Alu 2 148 -1 5 1466 183 80 0 0 chr1 115540558 115540583 -81654849 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 1466 372 107 16 18 chr1 115540599 115540665 -81654767 - B2_Mm2 SINE B2 -82 116 46 5 1466 989 109 85 0 chr1 115540695 115540860 -81654572 - B2_Mm1t SINE B2 -13 180 2 5 1466 4925 85 3 12 chr1 115541106 115541466 -81653966 - L1_Mm LINE L1 -1093 4790 4432 5 1466 272 48 24 0 chr1 115541466 115541508 -81653924 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1466 4925 85 3 12 chr1 115541508 115541894 -81653538 - L1_Mm LINE L1 -1452 4431 4051 5 1466 5841 74 0 0 chr1 115541895 115542693 -81652739 + L1Md_F2 LINE L1 4789 5586 -297 5 1466 8006 40 9 2 chr1 115542693 115543705 -81651727 + L1Md_F2 LINE L1 5587 6582 0 5 1466 3302 122 50 11 chr1 115544450 115545342 -81650090 + L1VL1 LINE L1 435 1376 -2322 5 1466 1939 144 13 3 chr1 115545334 115545709 -81649723 + L1_Mm LINE L1 3609 3987 -1896 6 1466 21328 114 131 55 chr1 115545708 115546145 -81649287 - L1_Mus3 LINE L1 -457 6181 5678 6 1466 7409 29 6 5 chr1 115546145 115547037 -81648395 + L1Md_F3 LINE L1 5676 6568 -16 6 1466 21328 148 73 24 chr1 115547037 115547060 -81648372 - L1_Mm LINE L1 -206 5677 5677 6 1466 324 0 0 0 chr1 115547060 115547096 -81648336 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 6 1466 21328 148 73 24 chr1 115547096 115548116 -81647316 - L1_Mus3 LINE L1 -206 5677 4672 6 1466 252 77 0 0 chr1 115548116 115548155 -81647277 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1466 21328 162 70 35 chr1 115548155 115552080 -81643352 - L1_Mus3 LINE L1 -1212 4671 609 6 1466 1569 238 44 0 chr1 115552379 115552745 -81642687 + ORR1C2 LTR MaLR 1 382 -2 6 1466 492 336 8 0 chr1 115552749 115552874 -81642558 + MTE2b LTR MaLR 21 146 -233 6 1466 655 313 99 18 chr1 115552969 115553252 -81642180 + RMER15 LTR ERVL 258 563 -12 6 1466 516 16 0 0 chr1 115553811 115553872 -81641560 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1466 855 280 37 133 chr1 115553883 115554237 -81641195 - MTE2a LTR MaLR -59 320 1 7 1466 635 293 153 103 chr1 115555481 115555820 -81639612 - MTE2b LTR MaLR -21 358 3 7 1466 2227 159 75 2 chr1 115556114 115556529 -81638903 + BGLII_A LTR ERVK 1 445 0 7 1466 495 304 7 22 chr1 115556673 115556811 -81638621 + B1F2 SINE Alu 12 147 -2 7 1466 828 281 139 19 chr1 115558048 115558250 -81637182 - B4A SINE B4 -3 289 66 7 1466 261 0 0 0 chr1 115558250 115558279 -81637153 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 7 1466 828 281 139 19 chr1 115558279 115558334 -81637098 - B4A SINE B4 -227 65 3 7 1466 210 269 45 0 chr1 115558435 115558502 -81636930 - MIRc SINE MIR -121 147 78 7 1466 407 328 186 4 chr1 115558924 115559166 -81636266 - MT2A LTR ERVL 0 533 248 7 1466 252 326 50 20 chr1 115559158 115559258 -81636174 - MTEa LTR MaLR -256 123 21 7 1466 468 230 0 0 chr1 115559281 115559416 -81636016 + (CA)n Simple_repeat Simple_repeat 2 136 0 7 1466 1520 259 23 93 chr1 115559427 115559987 -81635445 + RLTR26 LTR ERVK 2 554 -88 8 1466 1635 196 3 43 chr1 115559987 115560313 -81635119 + RMER16 LTR ERVK 1 313 -220 8 1466 22788 112 47 28 chr1 115560335 115560765 -81634667 + RMER16-int LTR ERVK 1382 1824 -3582 8 1466 288 70 0 0 chr1 115560765 115560808 -81634624 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1466 22788 112 47 28 chr1 115560808 115561611 -81633821 + RMER16-int LTR ERVK 1825 2658 -2748 8 1466 210 224 56 69 chr1 115561611 115561683 -81633749 + L3 LINE CR1 3583 3653 -836 8 1466 22788 112 47 28 chr1 115561683 115564324 -81631108 + RMER16-int LTR ERVK 2659 5404 -2 8 1466 2601 151 70 31 chr1 115564325 115564837 -81630595 + RMER16 LTR ERVK 1 532 -1 8 1466 322 203 0 0 chr1 115564840 115564899 -81630533 + RLTR26 LTR ERVK 584 642 0 8 1466 409 239 13 0 chr1 115564936 115565095 -81630337 + (CATA)n Simple_repeat Simple_repeat 2 162 0 8 1466 1593 177 83 75 chr1 115565170 115565339 -81630093 + ORR1B2 LTR MaLR 3 144 -223 8 1466 818 85 8 0 chr1 115565339 115565468 -81629964 + (TC)n Simple_repeat Simple_repeat 2 131 0 8 1466 1593 177 83 75 chr1 115565468 115565658 -81629774 + ORR1B2 LTR MaLR 145 363 -4 8 1466 226 239 43 0 chr1 115566409 115566455 -81628977 - 7SK RNA RNA -91 240 193 8 1466 432 239 45 11 chr1 115566492 115566581 -81628851 - 7SK RNA RNA -239 92 1 8 1466 623 312 79 63 chr1 115567342 115567657 -81627775 + RMER5 LTR ERV1 215 534 0 9 1466 431 293 104 15 chr1 115567676 115567811 -81627621 + B1_Mur2 SINE Alu 1 147 0 9 1466 303 85 0 0 chr1 115567897 115567944 -81627488 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 9 1466 222 37 0 0 chr1 115567952 115567979 -81627453 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 9 1466 276 340 84 65 chr1 115568462 115568616 -81626816 + MTEa LTR MaLR 3 159 -220 9 1466 678 291 81 139 chr1 115568789 115569077 -81626355 + MT2A LTR ERVL 269 555 -1 9 1466 924 9 0 0 chr1 115569136 115569241 -81626191 + (GAA)n Simple_repeat Simple_repeat 1 105 0 9 1466 823 192 11 8 chr1 115569319 115569497 -81625935 - ORR1A4 LTR MaLR -8 321 143 9 1466 323 312 23 30 chr1 115569538 115569670 -81625762 + MTD LTR MaLR 6 136 -283 9 1466 3703 201 47 15 chr1 115569670 115570917 -81624515 - Lx7 LINE L1 -1410 6286 4994 9 1466 437 348 22 0 chr1 115571264 115571402 -81624030 - B1F SINE Alu -8 141 1 1 1466 237 321 0 56 chr1 115571749 115571838 -81623594 - LTR85a LTR Gypsy? -589 113 30 1 1466 207 211 0 0 chr1 115571905 115571943 -81623489 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 1 1466 894 284 58 14 chr1 115571968 115572243 -81623189 - B4A SINE B4 0 292 6 1 1466 716 250 12 18 chr1 115572472 115572639 -81622793 - MTE2b LTR MaLR -9 370 205 1 1466 372 88 0 0 chr1 115573744 115573801 -81621631 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1466 737 326 36 36 chr1 115573812 115574060 -81621372 - B4 SINE B4 -24 268 21 1 1466 227 337 83 10 chr1 115574743 115574839 -81620593 + B4A SINE B4 190 292 0 1 1466 221 208 57 0 chr1 115574841 115574894 -81620538 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 1 1466 870 10 0 0 chr1 115574895 115574994 -81620438 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 1466 187 206 0 0 chr1 115575001 115575035 -81620397 - MER5B DNA MER1_type -144 34 1 1 1466 653 274 85 15 chr1 115575351 115575551 -81619881 - B4 SINE B4 -77 215 2 1 1466 5155 60 28 1 chr1 115575668 115576525 -81618907 + L1Md_F2 LINE L1 5152 6022 -560 1 1466 2868 83 93 11 chr1 115576525 115576964 -81618468 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1466 5857 36 3 19 chr1 115576965 115577722 -81617710 - IAPEz-int LTR ERVK -1 6480 5736 1 1466 2071 79 0 0 chr1 115577721 115577999 -81617433 - IAPEz-int LTR ERVK -4845 1636 1359 1 1466 3378 58 4 16 chr1 115577999 115578577 -81616855 - IAPEz-int LTR ERVK -5819 662 168 1 1466 248 244 0 0 chr1 115578577 115578622 -81616810 - RLTR27 LTR ERVK -34 275 231 1 1466 869 129 93 6 chr1 115578630 115578802 -81616630 - IAPEz-int LTR ERVK -6286 195 9 1 1466 2968 80 89 9 chr1 115578803 115579243 -81616189 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1466 4045 77 20 21 chr1 115579243 115579804 -81615628 + L1Md_F2 LINE L1 6017 6576 -6 1 1466 453 50 0 0 chr1 115579856 115579916 -81615516 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1466 642 243 21 21 chr1 115579921 115580064 -81615368 - B3A SINE B2 -52 146 4 1 1466 1783 230 2 61 chr1 115580150 115580544 -81614888 + ORR1C1 LTR MaLR 3 373 -5 1 1466 1119 89 0 7 chr1 115580544 115580691 -81614741 + B1_Mm SINE Alu 1 146 -1 1 1466 24 0 0 0 chr1 115580719 115580743 -81614689 + AT_rich Low_complexity Low_complexity 1 24 0 1 1466 221 57 29 0 chr1 115580759 115580794 -81614638 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1466 405 278 84 163 chr1 115580854 115581056 -81614376 + ID_B1 SINE B4 30 215 -9 1 1466 3762 140 48 6 chr1 115581196 115582263 -81613169 + RLTR21 LTR ERVK 1 1112 -460 1 1466 252 146 62 0 chr1 115582276 115582324 -81613108 + RLTR21 LTR ERVK 1059 1109 -463 1 1466 398 181 27 14 chr1 115582895 115582968 -81612464 + B3A SINE B2 5 78 -120 1 1466 457 229 29 0 chr1 115583234 115583339 -81612093 + RMER15 LTR ERVL 400 507 -68 1 1466 1719 223 75 3 chr1 115583406 115583792 -81611640 + MTD LTR MaLR 6 419 0 1 1466 711 104 0 0 chr1 115584139 115584245 -81611187 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 1 1466 621 312 98 46 chr1 115584344 115584650 -81610782 + RMER15 LTR ERVL 238 559 -16 1 1466 211 324 28 0 chr1 115584656 115584727 -81610705 + MER5A DNA MER1_type 99 171 -18 1 1466 700 344 0 5 chr1 115585020 115585239 -81610193 + MTE2b LTR MaLR 1 218 -161 1 1466 3315 203 92 122 chr1 115585283 115586328 -81609104 - RLTR25B LTR ERVK -4 1024 11 1 1466 927 309 91 72 chr1 115586314 115586908 -81608524 + RLTR18 LTR ERVK 12 616 0 1 1466 625 267 12 12 chr1 115586908 115587071 -81608361 + MTE2b LTR MaLR 215 377 -2 1 1466 328 26 0 0 chr1 115587256 115587294 -81608138 + HAL1-3A_ME LINE L1 1974 2011 -847 1 1466 438 20 0 0 chr1 115587294 115587345 -81608087 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1466 195 42 0 0 chr1 115587347 115587371 -81608061 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1466 228 247 57 34 chr1 115587428 115587516 -81607916 + Charlie23a DNA MER1_type 49 138 -201 1 1466 438 36 0 0 chr1 115587532 115587588 -81607844 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1466 467 329 26 65 chr1 115587763 115587802 -81607630 + MER31A LTR ERV1 203 241 -244 1 1466 3293 38 5 2 chr1 115587802 115588197 -81607235 - MTA_Mm LTR MaLR 0 396 1 1 1466 7144 78 47 65 chr1 115588197 115589315 -81606117 - MTA_Mm-int LTR MaLR 0 1098 1 1 1466 3152 41 10 5 chr1 115589315 115589709 -81605723 - MTA_Mm LTR MaLR 0 396 1 1 1466 467 329 26 65 chr1 115589709 115589898 -81605534 + MER31A LTR ERV1 242 422 -63 1 1466 866 176 40 74 chr1 115589901 115589924 -81605508 - B2_Mm2 SINE B2 0 195 168 1 1466 357 43 0 0 chr1 115589924 115589971 -81605461 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1466 866 176 40 74 chr1 115589971 115590149 -81605283 - B2_Mm2 SINE B2 -28 167 1 1 1466 7023 142 45 39 chr1 115590187 115591588 -81603844 + Lx2 LINE L1 5587 6995 -2 1 1466 315 0 0 0 chr1 115591589 115591624 -81603808 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1466 2481 199 77 33 chr1 115592334 115592917 -81602515 + RLTR40 LTR ERVK 31 639 -178 1 1466 10268 31 0 1 chr1 115593009 115594946 -81600486 - L1Md_T LINE L1 0 6582 4647 1 1466 459 220 77 5 chr1 115594946 115595139 -81600293 + RMER3D-int LTR ERVK 2652 2811 -31 1 1466 2680 121 12 0 chr1 115595168 115595583 -81599849 + BGLII LTR ERVK 1 420 -1 1 1466 2672 96 10 0 chr1 115595645 115596030 -81599402 - BGLII LTR ERVK 0 421 33 1 1466 578 307 42 12 chr1 115596853 115596877 -81598555 - B3A SINE B2 -28 170 148 1 1466 376 84 27 40 chr1 115596877 115596951 -81598481 + (TATG)n Simple_repeat Simple_repeat 4 76 0 1 1466 578 307 42 12 chr1 115596951 115597091 -81598341 - B3A SINE B2 -51 147 1 1 1466 1119 47 14 0 chr1 115598284 115598432 -81597000 + L1_Mus2 LINE L1 6416 6565 -1 1 1466 295 308 56 37 chr1 115598433 115598541 -81596891 + RMER30 DNA MER1_type 92 201 -1 1 1466 302 329 100 47 chr1 115599062 115599212 -81596220 + HAL1-3A_ME LINE L1 2281 2438 -420 1 1466 233 286 20 30 chr1 115599212 115599286 -81596146 + GA-rich Low_complexity Low_complexity 3 76 0 1 1466 354 45 0 0 chr1 115599286 115599330 -81596102 + (GGA)n Simple_repeat Simple_repeat 3 46 0 1 1466 233 286 20 30 chr1 115599330 115599356 -81596076 + polypurine Low_complexity Low_complexity 77 102 0 1 1466 456 285 429 14 chr1 115599766 115600033 -81595399 - MTE2a LTR MaLR 0 379 2 1 1466 633 128 0 0 chr1 115600907 115601009 -81594423 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1466 731 262 19 0 chr1 115601031 115601191 -81594241 + B4 SINE B4 115 277 -15 1 1466 21 36 0 0 chr1 115602344 115602372 -81593060 + AT_rich Low_complexity Low_complexity 1 28 0 1 1466 1018 299 10 51 chr1 115602795 115603088 -81592344 - B4 SINE B4 -2 290 10 1 1466 21 0 0 0 chr1 115603155 115603176 -81592256 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 532 283 37 7 chr1 115603231 115603386 -81592046 - RSINE1 SINE B4 -3 162 4 1 1466 6911 95 5 3 chr1 115603413 115604545 -81590887 - L1Md_F2 LINE L1 -1 6581 5447 1 1466 216 0 0 0 chr1 115604545 115604569 -81590863 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1466 4055 139 31 16 chr1 115604588 115605267 -81590165 + Lx LINE L1 5965 6653 -1 1 183 3016 229 54 50 chr1 115605310 115606138 -81589294 - RMER13B LTR ERVK -76 832 1 1 1467 2023 212 61 74 chr1 115606152 115606803 -81588629 - RMER17A-int LTR ERVK -2 1726 1084 1 1467 332 275 0 35 chr1 115606851 115606964 -81588468 - RMER17A-int LTR ERVK -635 1093 985 1 1467 612 172 6 50 chr1 115607004 115607163 -81588269 - RMER17A-int LTR ERVK -738 990 839 1 1467 531 0 0 0 chr1 115607561 115607620 -81587812 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1467 694 178 33 46 chr1 115607721 115607874 -81587558 - RMER13B LTR ERVK -807 151 1 1 1467 309 189 0 98 chr1 115608019 115608101 -81587331 - MTE2b LTR MaLR -1 378 305 1 1467 1726 68 0 4 chr1 115608101 115608339 -81587093 - L1_Mm LINE L1 -962 4921 4685 1 1467 1467 21 5 16 chr1 115608339 115608528 -81586904 + L1Md_F2 LINE L1 6384 6570 -12 1 1467 1187 292 24 21 chr1 115608530 115608859 -81586573 - MTE2b LTR MaLR -49 330 1 1 1467 354 138 0 0 chr1 115609655 115609713 -81585719 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1467 501 358 47 9 chr1 115610161 115610375 -81585057 - ID_B1 SINE B4 0 224 3 1 1467 23633 22 0 0 chr1 115610820 115613919 -81581513 - L1Md_T LINE L1 -500 6082 2984 1 1467 3995 38 0 0 chr1 115613919 115614390 -81581042 + L1Md_T LINE L1 6112 6582 0 1 1467 286 328 66 8 chr1 115614936 115615068 -81580364 + B4A SINE B4 1 143 -81 1 1467 298 208 0 0 chr1 115615093 115615146 -81580286 + B4A SINE B4 240 292 0 1 1467 297 0 0 0 chr1 115615168 115615201 -81580231 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1467 347 256 231 0 chr1 115616116 115616237 -81579195 + B1_Mur2 SINE Alu 1 149 0 1 1467 1043 299 67 39 chr1 115616709 115617099 -81578333 - MTD LTR MaLR -14 405 5 1 1467 7168 64 6 0 chr1 115617541 115619103 -81576329 - L1Md_F3 LINE L1 -14 6570 5000 1 1467 34104 60 8 0 chr1 115619172 115621090 -81574342 - L1Md_F3 LINE L1 -14 6570 4631 1 1467 251 28 28 0 chr1 115621090 115621126 -81574306 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1467 34104 68 2 9 chr1 115621126 115625128 -81570304 - L1Md_F3 LINE L1 -1253 4630 664 1 1467 2519 58 35 0 chr1 115625159 115625503 -81569929 - ORR1A0-int LTR MaLR -1436 356 1 1 1467 1747 46 7 2 chr1 115625503 115625742 -81569690 - ORR1A0 LTR MaLR 0 384 139 1 1467 8991 71 1 0 chr1 115625742 115626954 -81568478 + L1_Mm LINE L1 4668 5880 -3 1 1467 1786 212 12 49 chr1 115626984 115627395 -81568037 - RMER10B LTR ERVL -2 396 1 1 1467 558 249 87 77 chr1 115627416 115627599 -81567833 - B2_Mm2 SINE B2 -9 186 2 1 1467 21 0 0 0 chr1 115627602 115627623 -81567809 + AT_rich Low_complexity Low_complexity 1 21 0 1 1467 395 273 94 153 chr1 115627961 115628268 -81567164 - B4 SINE B4 0 292 4 1 1467 189 0 0 0 chr1 115628314 115628335 -81567097 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1467 637 289 73 76 chr1 115628474 115628777 -81566655 + RMER5 LTR ERV1 112 413 -121 1 1467 186 341 66 0 chr1 115628785 115628876 -81566556 + MER5A DNA MER1_type 52 148 -41 1 1467 354 61 0 0 chr1 115629202 115629251 -81566181 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 1 1467 1481 97 21 21 chr1 115629277 115629510 -81565922 - L1_Mus3 LINE L1 -3 6635 6403 1 1467 372 194 56 37 chr1 115629805 115629912 -81565520 - RLTR14-int LTR ERV1 -4761 556 448 1 1467 703 299 78 57 chr1 115630694 115631066 -81564366 - RLTR14 LTR ERV1 -2 380 1 1 1467 1370 284 42 14 chr1 115631128 115631489 -81563943 + MTEa LTR MaLR 9 379 0 1 1467 456 312 83 26 chr1 115631876 115632106 -81563326 + RMER15 LTR ERVL 319 561 -14 1 1467 871 260 129 18 chr1 115633215 115633548 -81561884 + ORR1D2 LTR MaLR 1 370 0 1 1467 996 316 35 32 chr1 115633573 115633857 -81561575 - B4 SINE B4 -1 291 7 1 1467 1199 243 104 13 chr1 115633952 115634269 -81561163 - ORR1D2 LTR MaLR -24 346 1 2 1467 286 70 0 50 chr1 115634887 115634947 -81560485 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 2 1467 232 356 36 30 chr1 115634973 115635138 -81560294 - MER106B DNA MER1_type -20 1039 874 2 1467 322 276 7 36 chr1 115635413 115635552 -81559880 + L1_Rod LINE L1 5686 5820 -27 2 1467 3491 20 2 0 chr1 115635568 115635963 -81559469 + MTA_Mm LTR MaLR 1 396 0 2 1467 8992 40 4 1 chr1 115635963 115637058 -81558374 + MTA_Mm-int LTR MaLR 1 1098 0 2 1467 3466 23 2 0 chr1 115637058 115637453 -81557979 + MTA_Mm LTR MaLR 1 396 0 2 1467 366 129 0 0 chr1 115637508 115637570 -81557862 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1467 354 45 0 0 chr1 115637572 115637616 -81557816 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 2 1467 342 318 94 35 chr1 115637672 115637874 -81557558 - B3 SINE B2 0 216 3 2 1467 216 0 0 0 chr1 115638893 115638917 -81556515 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1467 1062 92 0 0 chr1 115638920 115639061 -81556371 - B1_Mm SINE Alu -6 141 1 2 1467 5719 120 19 3 chr1 115639477 115640812 -81554620 - L1VL4 LINE L1 -2207 1352 1 2 1467 38547 18 1 6 chr1 115641164 115647525 -81547907 - L1Md_A LINE L1 -2 6580 254 2 1467 21 36 0 0 chr1 115647835 115647863 -81547569 + AT_rich Low_complexity Low_complexity 1 28 0 2 1467 242 267 248 8 chr1 115647875 115647996 -81547436 + MIRb SINE MIR 117 266 -2 2 1467 355 341 90 40 chr1 115648502 115648679 -81546753 - ID_B1 SINE B4 -7 217 32 2 1467 1014 194 66 0 chr1 115648943 115649154 -81546278 - URR1B DNA MER1_type 0 225 1 2 1467 3055 255 48 57 chr1 115649687 115650602 -81544830 - RMER13B LTR ERVK 0 908 2 2 1467 2092 192 3 3 chr1 115650620 115651006 -81544426 + ORR1A3-int LTR MaLR 137 522 -1441 2 1467 499 347 73 44 chr1 115651496 115651770 -81543662 - B4A SINE B4 0 292 11 2 1467 876 82 0 0 chr1 115652408 115652530 -81542902 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 2 1467 508 349 35 115 chr1 115652597 115652805 -81542627 - B4A SINE B4 0 292 100 2 1467 258 32 0 0 chr1 115652805 115652836 -81542596 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1467 508 349 35 115 chr1 115652836 115652941 -81542491 - B4A SINE B4 -193 99 4 2 1467 286 265 29 0 chr1 115653002 115653070 -81542362 - RMER30 DNA MER1_type -29 173 104 2 1467 211 211 0 0 chr1 115653070 115653122 -81542310 + A-rich Low_complexity Low_complexity 1 52 0 2 1467 296 314 78 0 chr1 115653353 115653455 -81541977 - Tigger5 DNA MER2_type 0 2406 2297 2 1467 33165 74 7 3 chr1 115653825 115660070 -81535362 - L1Md_F2 LINE L1 -14 6568 301 2 1467 465 19 0 0 chr1 115660122 115660176 -81535256 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 2 1467 432 0 0 0 chr1 115660176 115660223 -81535209 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1467 489 289 16 0 chr1 115660225 115660353 -81535079 - RSINE1 SINE B4 -33 132 3 2 1467 217 278 14 0 chr1 115660501 115660573 -81534859 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2 1467 1454 140 57 19 chr1 115661121 115661384 -81534048 + L1Md_F2 LINE L1 6290 6562 -20 2 1467 1107 122 0 0 chr1 115661384 115661556 -81533876 + (GAA)n Simple_repeat Simple_repeat 2 173 0 2 1467 317 290 44 61 chr1 115661556 115661670 -81533762 + PB1D10 SINE Alu 8 119 -1 2 1467 213 374 171 28 chr1 115661875 115662051 -81533381 - B4 SINE B4 -60 232 32 2 1467 336 309 42 88 chr1 115662075 115662267 -81533165 - B2_Mm2 SINE B2 -12 183 1 2 1467 1925 226 3 8 chr1 115662334 115662726 -81532706 + RLTR25B LTR ERVK 16 405 -623 2 1467 661 302 65 85 chr1 115662904 115663197 -81532235 + RLTR25B LTR ERVK 742 1028 0 2 1467 303 310 104 37 chr1 115663992 115664126 -81531306 - B1_Mur1 SINE Alu -5 144 2 2 1467 390 308 124 19 chr1 115664126 115664195 -81531237 - B4 SINE B4 -210 82 4 2 1467 806 318 63 37 chr1 115664983 115665362 -81530070 - MTD LTR MaLR -14 405 17 2 1467 21 0 0 0 chr1 115665742 115665763 -81529669 + AT_rich Low_complexity Low_complexity 1 21 0 2 1467 3337 216 14 20 chr1 115665780 115666469 -81528963 - RMER13B LTR ERVK -4 904 220 2 1467 764 49 0 55 chr1 115666469 115666578 -81528854 - L1Md_F2 LINE L1 -880 5756 5654 2 1467 1394 53 73 0 chr1 115666562 115666768 -81528664 + L1Md_F2 LINE L1 5754 5974 -608 2 1467 858 94 0 8 chr1 115666765 115666894 -81528538 + L1_Mus1 LINE L1 6328 6455 -112 2 1467 2781 67 0 0 chr1 115666929 115667275 -81528157 - ORR1A1 LTR MaLR 0 346 1 2 1467 13427 65 6 3 chr1 115667275 115669062 -81526370 - ORR1A1-int LTR MaLR 0 1792 1 2 1467 2875 46 3 0 chr1 115669062 115669407 -81526025 - ORR1A1 LTR MaLR 0 346 1 2 1467 565 314 62 19 chr1 115669407 115669530 -81525902 - B3 SINE B2 -81 135 5 2 1467 480 18 0 0 chr1 115671404 115671461 -81523971 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1467 401 263 10 39 chr1 115671523 115671626 -81523806 - RSINE1 SINE B4 -21 144 45 2 1467 186 43 0 0 chr1 115671992 115672015 -81523417 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1467 582 203 11 28 chr1 115672074 115672256 -81523176 + T-rich Low_complexity Low_complexity 1 179 0 2 1467 399 309 30 0 chr1 115672685 115672803 -81522629 + RLTR19 LTR ERVK 397 499 0 2 1467 381 270 23 23 chr1 115672825 115672903 -81522529 + RLTR19-int LTR ERVK 28 105 -6032 2 1467 186 43 0 0 chr1 115672903 115672926 -81522506 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1467 381 270 23 23 chr1 115672926 115672976 -81522456 + RLTR19-int LTR ERVK 106 156 -5981 2 1467 359 88 0 29 chr1 115672982 115673052 -81522380 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 2 1467 198 0 0 0 chr1 115673247 115673269 -81522163 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1467 2978 187 40 22 chr1 115673300 115673526 -81521906 + RLTR19-int LTR ERVK 289 525 -5612 2 1467 493 15 30 0 chr1 115673526 115673592 -81521840 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1467 2978 187 40 22 chr1 115673592 115674033 -81521399 + RLTR19-int LTR ERVK 526 968 -5169 2 1467 1032 82 0 40 chr1 115674035 115674187 -81521245 + B1_Mus2 SINE Alu 2 147 0 2 1467 192 149 0 0 chr1 115674187 115674234 -81521198 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1467 519 223 30 23 chr1 115674234 115674367 -81521065 + RLTR19-int LTR ERVK 956 1089 -5048 2 1467 3101 65 28 0 chr1 115674368 115674798 -81520634 - L1Md_F2 LINE L1 -252 6330 5889 2 1467 333 309 75 91 chr1 115674920 115675119 -81520313 - RMER2 LTR ERV1 -42 525 330 2 1467 280 118 0 0 chr1 115675396 115675447 -81519985 + RLTR19-int LTR ERVK 3605 3655 -2482 2 1467 4662 212 37 45 chr1 115675443 115676144 -81519288 + RLTR19-int LTR ERVK 3824 4551 -1586 2 1467 3519 160 56 3 chr1 115676144 115676583 -81518849 + Lx3C LINE L1 6320 6768 -208 2 1467 898 97 14 0 chr1 115676583 115676727 -81518705 + (TA)n Simple_repeat Simple_repeat 2 147 0 2 1467 3519 160 56 3 chr1 115676727 115676909 -81518523 + Lx3C LINE L1 6769 6973 -3 2 1467 4662 212 37 45 chr1 115676909 115677375 -81518057 + RLTR19-int LTR ERVK 4552 4981 -1156 2 1467 690 207 67 0 chr1 115677400 115677550 -81517882 + RLTR19-int LTR ERVK 5451 5610 -527 2 1467 511 275 7 0 chr1 115677724 115677862 -81517570 + RLTR19-int LTR ERVK 5847 5985 -152 2 1467 846 179 6 0 chr1 115677866 115678022 -81517410 - Lx3C LINE L1 -139 6837 6681 2 1467 315 0 0 0 chr1 115678284 115678319 -81517113 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1467 455 112 0 12 chr1 115678320 115678401 -81517031 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1467 333 115 39 0 chr1 115678682 115678760 -81516672 + CT-rich Low_complexity Low_complexity 2 82 0 2 1467 288 257 118 9 chr1 115678832 115678942 -81516490 + B4A SINE B4 160 281 -11 2 1467 328 284 21 10 chr1 115679248 115679344 -81516088 + MTEb LTR MaLR 274 370 -9 2 1467 480 35 0 0 chr1 115679852 115679910 -81515522 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1467 423 0 0 0 chr1 115679910 115679956 -81515476 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1467 561 274 90 13 chr1 115680266 115680421 -81515011 + B4 SINE B4 98 264 -28 2 1467 261 256 12 0 chr1 115680483 115680508 -81514924 + polypurine Low_complexity Low_complexity 2 27 0 2 1467 219 114 0 0 chr1 115680508 115680543 -81514889 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 2 1467 261 256 12 0 chr1 115680543 115680599 -81514833 + polypurine Low_complexity Low_complexity 28 83 0 2 1467 1504 155 55 11 chr1 115681086 115681360 -81514072 + Lx LINE L1 6362 6647 -7 2 1467 418 285 68 23 chr1 115681635 115681768 -81513664 + B3A SINE B2 6 144 -54 2 1467 234 184 0 0 chr1 115681778 115681827 -81513605 + CT-rich Low_complexity Low_complexity 1 49 0 2 1467 23 54 0 0 chr1 115681916 115681953 -81513479 + AT_rich Low_complexity Low_complexity 1 37 0 2 1467 264 342 0 0 chr1 115681984 115682060 -81513372 - B4A SINE B4 -1 291 216 2 1467 392 44 14 29 chr1 115682073 115682143 -81513289 - Lx2A1 LINE L1 -10 6998 6930 2 1467 648 122 30 0 chr1 115682143 115682274 -81513158 - Lx2A LINE L1 -32 6976 6842 2 1467 343 252 16 65 chr1 115682253 115682376 -81513056 - Lx2A1 LINE L1 -389 6619 6503 2 1467 556 308 27 20 chr1 115682462 115682608 -81512824 - B4A SINE B4 -86 206 60 2 1467 843 303 47 11 chr1 115683457 115683734 -81511698 - B4 SINE B4 -4 288 2 2 1467 298 57 19 19 chr1 115684377 115684431 -81511001 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 2 1467 1083 88 0 0 chr1 115684431 115684568 -81510864 - B1_Mus1 SINE Alu -9 139 3 2 1467 1790 267 31 41 chr1 115684794 115685310 -81510122 + RLTR11A2 LTR ERVK 1 511 -16 2 1467 324 0 0 0 chr1 115686190 115686226 -81509206 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1467 379 292 9 19 chr1 115686293 115686401 -81509031 + MTEb LTR MaLR 270 376 -3 2 1467 756 309 10 19 chr1 115686845 115687053 -81508379 - B3 SINE B2 -10 206 1 2 1467 618 162 92 25 chr1 115688006 115688126 -81507306 + RMER2 LTR ERV1 1 128 -439 2 1467 369 91 15 0 chr1 115688126 115688192 -81507240 + MusHAL1 LINE L1 377 443 -2269 2 1467 10126 184 30 11 chr1 115688190 115688216 -81507216 + L1_Mur1 LINE L1 1706 1748 -4138 2 1467 510 17 0 0 chr1 115688216 115688275 -81507157 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1467 10126 184 30 11 chr1 115688275 115690595 -81504837 + L1_Mur1 LINE L1 1749 4095 -1791 2 1467 3756 97 9 2 chr1 115690616 115691185 -81504247 - L1Md_F2 LINE L1 -674 5209 4637 2 1467 2699 70 39 0 chr1 115691155 115691540 -81503892 + L1Md_F2 LINE L1 5184 5583 -300 2 1467 6975 92 14 15 chr1 115691543 115692540 -81502892 + L1Md_F2 LINE L1 5587 6582 0 2 1467 1063 173 4 18 chr1 115692546 115692775 -81502657 + L1_Mur1 LINE L1 4278 4503 -1383 2 1467 6080 103 62 7 chr1 115692780 115693725 -81501707 + Lx3_Mus LINE L1 6008 7004 -5 2 1467 1126 270 54 89 chr1 115693725 115694152 -81501280 + RMER2 LTR ERV1 156 567 0 2 1467 245 275 0 38 chr1 115694422 115694528 -81500904 - L1MA6 LINE L1 -51 6249 6148 2 1467 1429 234 66 3 chr1 115694900 115695248 -81500184 + MTEb LTR MaLR 1 370 -9 2 1467 231 36 0 0 chr1 115695381 115695409 -81500023 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2 1467 208 289 33 11 chr1 115695992 115696083 -81499349 + CT-rich Low_complexity Low_complexity 3 95 0 2 1467 891 291 171 9 chr1 115696208 115696524 -81498908 + MTE2a LTR MaLR 1 367 -12 2 1467 306 123 66 0 chr1 115696618 115696724 -81498708 + A-rich Low_complexity Low_complexity 1 113 0 2 1467 3604 165 36 37 chr1 115697441 115698082 -81497350 - RLTR26 LTR ERVK 0 642 3 2 1467 225 65 0 0 chr1 115698466 115698497 -81496935 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1467 234 294 0 29 chr1 115699771 115699841 -81495591 + MTEb LTR MaLR 18 85 -294 3 1467 8730 29 1 0 chr1 115700348 115701439 -81493993 - L1Md_T LINE L1 -710 5173 4082 3 1467 3184 28 0 2 chr1 115701437 115701834 -81493598 + L1Md_T LINE L1 5191 5586 -297 3 1467 8361 38 0 0 chr1 115701835 115702830 -81492602 + L1Md_T LINE L1 5588 6582 0 3 1467 762 277 4 38 chr1 115703074 115703311 -81492121 + MT2A LTR ERVL 1 301 -232 3 1467 1058 270 81 6 chr1 115703313 115703660 -81491772 + ORR1D1 LTR MaLR 1 373 -1 3 1467 326 149 0 0 chr1 115705740 115705787 -81489645 - HAL1-3A_ME LINE L1 -836 2022 1976 3 1467 183 156 0 0 chr1 115705787 115705819 -81489613 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1467 447 63 0 0 chr1 115705823 115705886 -81489546 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 3 1467 243 125 0 0 chr1 115706055 115706095 -81489337 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1467 359 390 8 0 chr1 115706113 115706236 -81489196 - B3 SINE B2 -46 170 47 3 1467 2582 212 30 6 chr1 115706715 115707219 -81488213 - RMER20A LTR ERVK 0 516 1 3 1467 218 320 20 0 chr1 115707249 115707299 -81488133 + ID4_ SINE ID 16 66 -17 3 1467 583 315 49 0 chr1 115707407 115707569 -81487863 + ID_B1 SINE B4 6 175 -49 3 1467 254 50 25 0 chr1 115707607 115707647 -81487785 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1467 272 191 29 0 chr1 115707998 115708066 -81487366 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1467 7506 52 5 1 chr1 115708170 115709646 -81485786 - L1Md_F2 LINE L1 0 6582 5121 3 1467 13548 92 3 15 chr1 115709634 115712993 -81482439 - L1Md_F2 LINE L1 -2612 3271 98 3 1467 987 319 46 52 chr1 115713703 115714050 -81481382 - MTEa LTR MaLR 0 379 35 3 1467 720 279 126 28 chr1 115714048 115714302 -81481130 - MTEa LTR MaLR -100 279 1 3 1467 391 326 171 36 chr1 115715906 115716157 -81479275 + RMER15 LTR ERVL 275 559 -16 3 1467 7400 58 3 0 chr1 115716868 115718053 -81477379 + L1Md_F3 LINE L1 5370 6557 -27 3 1467 210 37 0 0 chr1 115718055 115718082 -81477350 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1467 256 273 63 25 chr1 115718190 115718269 -81477163 + B4 SINE B4 186 267 -25 3 1467 297 0 0 0 chr1 115718278 115718311 -81477121 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1467 573 15 0 0 chr1 115718311 115718376 -81477056 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1467 599 324 17 0 chr1 115718837 115719010 -81476422 + ID_B1 SINE B4 49 224 0 3 1467 230 190 33 33 chr1 115719328 115719388 -81476044 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 3 1467 312 300 0 28 chr1 115719556 115719628 -81475804 - RMER20B LTR ERVK -38 589 520 3 1467 791 294 72 4 chr1 115719647 115719896 -81475536 + B4A SINE B4 26 291 -1 3 1467 444 327 57 19 chr1 115720698 115720907 -81474525 - ID_B1 SINE B4 -6 218 2 3 1467 714 24 0 0 chr1 115721225 115721309 -81474123 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 1467 5196 148 8 1 chr1 115721354 115722194 -81473238 - Lx LINE L1 -6 6648 5803 3 1467 5923 113 12 10 chr1 115722194 115723189 -81472243 + L1Md_F2 LINE L1 2799 3795 -2088 3 1467 6302 62 3 19 chr1 115723189 115724063 -81471369 + RLTR13A3 LTR ERVK 1 962 -16 3 1467 11269 99 9 33 chr1 115724064 115725896 -81469536 + L1Md_F2 LINE L1 3799 5586 -297 3 1467 6656 118 3 2 chr1 115725896 115726886 -81468546 + L1Md_F2 LINE L1 5587 6577 -5 3 1467 2938 196 21 6 chr1 115726888 115727516 -81467916 - L1_Mm LINE L1 -82 5801 5165 3 1467 2455 186 28 16 chr1 115727511 115728057 -81467375 + L1_Mm LINE L1 4619 5170 -713 3 1467 213 311 154 32 chr1 115728563 115728686 -81466746 - B1_Mur1 SINE Alu -1 148 11 3 1467 234 0 0 0 chr1 115728766 115728792 -81466640 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1467 1524 169 32 4 chr1 115728796 115729075 -81466357 - Lx2A1 LINE L1 -13 6995 6709 3 1467 331 374 8 24 chr1 115730145 115730271 -81465161 - PB1 SINE Alu -3 124 1 3 1467 581 208 0 0 chr1 115730538 115730663 -81464769 + L1VL4 LINE L1 216 340 -5962 3 1467 2143 103 9 100 chr1 115730667 115731060 -81464372 - RLTR10D LTR ERVK 0 359 1 3 1467 1588 147 28 57 chr1 115731060 115731378 -81464054 + L1VL4 LINE L1 454 762 -5540 3 1467 4285 141 46 22 chr1 115731376 115731527 -81463905 + MusHAL1 LINE L1 1514 1664 -1048 3 1467 2250 120 60 16 chr1 115731527 115731909 -81463523 + MTB LTR MaLR 1 399 -1 3 1467 4285 141 46 22 chr1 115731909 115732654 -81462778 + MusHAL1 LINE L1 1665 2431 -281 3 1467 317 203 0 0 chr1 115732654 115732718 -81462714 + L1MC LINE L1 3658 3721 -2425 3 1467 2609 181 36 35 chr1 115732724 115733302 -81462130 + Lx2 LINE L1 6417 6995 -2 3 1467 28 29 0 0 chr1 115733419 115733454 -81461978 + AT_rich Low_complexity Low_complexity 1 35 0 3 1467 318 303 147 88 chr1 115733477 115733497 -81461935 + B3 SINE B2 2 21 -195 3 1467 6686 93 56 18 chr1 115733497 115734483 -81460949 - RLTR13D5 LTR ERVK 0 1023 1 3 1467 398 261 56 112 chr1 115734483 115734652 -81460780 + B3A SINE B2 22 196 -2 3 1467 213 250 0 0 chr1 115734653 115734701 -81460731 + (TAA)n Simple_repeat Simple_repeat 1 48 0 3 1467 533 88 12 0 chr1 115734934 115735014 -81460418 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 3 1467 428 155 14 0 chr1 115735015 115735086 -81460346 - B1_Mur4 SINE Alu -13 137 66 3 1467 574 281 134 6 chr1 115735253 115735432 -81460000 - B3 SINE B2 -6 210 9 3 1467 815 311 22 5 chr1 115735728 115735951 -81459481 + B4 SINE B4 1 227 -65 3 1467 847 282 9 0 chr1 115735958 115736171 -81459261 + Lx7 LINE L1 6531 6745 -951 3 183 5907 137 37 5 chr1 115736177 115737456 -81457976 - Lx LINE L1 -7 6647 5330 3 1468 2098 247 71 13 chr1 115737456 115738079 -81457353 + Lx7 LINE L1 6764 7422 -274 3 1468 297 75 0 0 chr1 115738324 115738364 -81457068 + (ATG)n Simple_repeat Simple_repeat 3 42 0 3 1468 183 100 0 0 chr1 115739186 115739216 -81456216 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1468 775 331 18 40 chr1 115739243 115739517 -81455915 - B4A SINE B4 -10 282 15 3 1468 396 212 0 0 chr1 115740289 115740374 -81455058 - L1VL2 LINE L1 -6116 219 135 3 1468 184 367 76 0 chr1 115740394 115740473 -81454959 - L2b LINE L2 -34 3341 3257 3 1468 4468 38 0 0 chr1 115740813 115741339 -81454093 - L1Md_T LINE L1 0 6582 6057 3 1468 305 344 36 36 chr1 115741368 115741534 -81453898 - RLTR26 LTR ERVK -306 336 171 3 1468 12421 216 33 11 chr1 115741668 115744497 -81450935 - MERVK26-int LTR ERVK -7 6912 4021 3 1468 285 29 0 0 chr1 115744766 115744800 -81450632 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1468 5424 239 35 40 chr1 115744848 115746377 -81449055 - MERVK26-int LTR ERVK -4159 2760 1240 3 1468 180 0 0 0 chr1 115746508 115746528 -81448904 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1468 245 29 0 29 chr1 115746532 115746567 -81448865 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1468 729 154 98 0 chr1 115746568 115746691 -81448741 - B1_Mus1 SINE Alu -12 136 2 3 1468 191 61 0 29 chr1 115746823 115746857 -81448575 + (CAA)n Simple_repeat Simple_repeat 3 35 0 3 1468 818 206 0 0 chr1 115746868 115747023 -81448409 + RMER19C LTR ERVK 457 611 0 3 1468 804 118 94 0 chr1 115747905 115748032 -81447400 + B1_Mus1 SINE Alu 1 139 -9 3 1468 463 317 104 0 chr1 115748369 115748533 -81446899 - B3A SINE B2 -17 181 1 3 1468 3221 144 193 99 chr1 115748769 115749594 -81445838 + RMER17A2 LTR ERVK 1 902 -4 3 1468 1088 106 0 6 chr1 115749627 115749807 -81445625 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1468 1251 54 0 0 chr1 115749807 115749974 -81445458 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 1468 556 278 0 70 chr1 115749975 115750118 -81445314 - B4 SINE B4 -23 269 137 3 1468 219 371 95 0 chr1 115750309 115750414 -81445018 - B4 SINE B4 -176 116 2 3 1468 198 267 67 0 chr1 115750589 115750649 -81444783 + MER5A DNA MER1_type 1 64 -125 3 1468 532 333 0 88 chr1 115750929 115751169 -81444263 + B4 SINE B4 74 292 0 3 1468 421 121 0 39 chr1 115751181 115751284 -81444148 + (CAGAGA)n Simple_repeat Simple_repeat 6 104 0 3 1468 224 224 35 0 chr1 115751320 115751378 -81444054 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1468 387 0 0 0 chr1 115751378 115751421 -81444011 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1468 285 29 0 0 chr1 115751421 115751455 -81443977 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1468 423 0 0 0 chr1 115752069 115752116 -81443316 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1468 285 75 0 0 chr1 115752116 115752155 -81443277 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1468 674 327 64 36 chr1 115752246 115752465 -81442967 - B4 SINE B4 0 292 68 3 1468 661 259 49 15 chr1 115752551 115752755 -81442677 - B3 SINE B2 -4 212 2 3 1468 23 0 0 0 chr1 115752779 115752802 -81442630 + AT_rich Low_complexity Low_complexity 1 23 0 3 1468 217 200 0 35 chr1 115752891 115752948 -81442484 + A-rich Low_complexity Low_complexity 3 57 0 3 1468 623 180 63 32 chr1 115753170 115753296 -81442136 + RLTR16 LTR ERVK 1 130 -375 3 1468 1107 238 73 51 chr1 115753299 115753613 -81441819 - RLTR11A LTR ERVK -207 321 1 3 1468 270 0 0 0 chr1 115753652 115753682 -81441750 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 3 1468 600 260 20 0 chr1 115753968 115754118 -81441314 - MLT1B LTR MaLR -237 153 1 3 1468 2813 140 9 5 chr1 115754589 115755020 -81440412 + RLTR10C LTR ERVK 1 433 -3 3 1468 369 0 0 0 chr1 115755065 115755106 -81440326 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1468 240 35 0 0 chr1 115755106 115755134 -81440298 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1468 646 293 6 6 chr1 115755233 115755398 -81440034 - B4 SINE B4 -127 165 1 3 1468 1027 265 69 80 chr1 115755652 115756001 -81439431 - MTD LTR MaLR -8 411 67 3 1468 449 34 17 0 chr1 115756061 115756120 -81439312 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1468 587 212 95 0 chr1 115756496 115756633 -81438799 - MTD LTR MaLR -255 164 15 3 1468 367 351 107 35 chr1 115757025 115757335 -81438097 - Charlie16a DNA MER1_type -7 335 4 3 1468 599 339 36 9 chr1 115757766 115757989 -81437443 + B4 SINE B4 1 229 -63 3 1468 828 217 34 112 chr1 115758973 115759019 -81436413 + RMER6B LTR ERVK 247 290 -171 3 1468 185 65 0 31 chr1 115759019 115759051 -81436381 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1468 828 217 34 112 chr1 115759051 115759237 -81436195 + RMER6B LTR ERVK 291 461 0 3 1468 1688 262 37 2 chr1 115760100 115760502 -81434930 - MTC LTR MaLR 0 421 6 4 1468 405 200 12 12 chr1 115760668 115760749 -81434683 - B4 SINE B4 -206 86 6 4 1468 324 0 0 0 chr1 115761421 115761457 -81433975 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1468 578 289 43 31 chr1 115762023 115762184 -81433248 + RMER13B LTR ERVK 742 904 -4 4 1468 776 310 98 10 chr1 115762832 115763161 -81432271 + MTEa LTR MaLR 2 362 -17 4 1468 620 369 14 28 chr1 115763677 115763964 -81431468 + B4A SINE B4 8 290 -2 4 1468 276 127 0 0 chr1 115764001 115764056 -81431376 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1468 456 353 8 0 chr1 115764058 115764191 -81431241 + B4 SINE B4 95 228 -64 4 1468 8547 161 110 38 chr1 115764195 115765573 -81429859 - L1_Mur2 LINE L1 -2313 3564 2049 4 1468 486 0 0 0 chr1 115765573 115765627 -81429805 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1468 8547 178 73 29 chr1 115765627 115766635 -81428797 - L1_Mur2 LINE L1 -3829 2048 1021 4 1468 332 213 43 0 chr1 115766647 115766741 -81428691 - L1_Mur2 LINE L1 -6567 519 422 4 1468 234 355 87 26 chr1 115766853 115767058 -81428374 - MIR SINE MIR -42 226 2 4 1468 482 183 0 19 chr1 115767067 115767173 -81428259 + C-rich Low_complexity Low_complexity 1 104 0 4 1468 191 105 53 0 chr1 115767186 115767224 -81428208 + (TATG)n Simple_repeat Simple_repeat 1 40 0 4 1468 437 281 263 18 chr1 115767250 115767478 -81427954 - B4A SINE B4 -8 284 1 4 1468 23 0 0 0 chr1 115767822 115767845 -81427587 + AT_rich Low_complexity Low_complexity 1 23 0 4 1468 435 220 188 8 chr1 115768059 115768192 -81427240 - RSINE1 SINE B4 -8 157 1 4 1468 1037 131 6 0 chr1 115768211 115768387 -81427045 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1468 279 175 0 0 chr1 115768396 115768453 -81426979 + CT-rich Low_complexity Low_complexity 2 58 0 4 1468 359 326 11 0 chr1 115768683 115768778 -81426654 - B4 SINE B4 0 292 197 4 1468 4519 306 31 45 chr1 115769397 115771242 -81424190 + RodERV21-int LTR ERV1 728 2545 -2446 4 1468 460 201 36 42 chr1 115771304 115771470 -81423962 + RMER17C-int LTR ERVK 2263 2427 -811 4 1468 2358 151 73 2 chr1 115771458 115771922 -81423510 + RMER17C-int LTR ERVK 2332 2828 -410 4 1468 459 0 0 0 chr1 115771949 115772000 -81423432 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1468 2018 145 6 3 chr1 115772000 115772338 -81423094 + RMER17C-int LTR ERVK 2900 3238 0 4 1468 685 173 22 0 chr1 115772338 115772477 -81422955 + RMER17C LTR ERVK 1 142 -268 4 1468 970 229 22 13 chr1 115772552 115772778 -81422654 + MTC LTR MaLR 194 421 0 4 1468 949 272 52 26 chr1 115772892 115773164 -81422268 - MTC LTR MaLR -133 288 10 4 1468 3645 43 14 88 chr1 115773277 115773790 -81421642 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1468 595 328 15 0 chr1 115773944 115774142 -81421290 + Lx8 LINE L1 6932 7132 -341 4 1468 241 274 24 12 chr1 115774337 115774422 -81421010 + RMER30 DNA MER1_type 82 167 -35 4 1468 919 75 64 50 chr1 115774742 115774883 -81420549 + B1_Mus2 SINE Alu 5 147 0 4 1468 1707 288 8 59 chr1 115775325 115775850 -81419582 + RLTR18B LTR ERVK 3 500 -12 4 1468 644 162 8 17 chr1 115775813 115775932 -81419500 + RLTR23 LTR ERV1 301 418 -12 4 1468 270 267 0 0 chr1 115777013 115777073 -81418359 + LTR16C LTR ERVL 428 487 -2 4 1468 195 114 0 0 chr1 115777266 115777301 -81418131 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1468 411 21 0 0 chr1 115777313 115777361 -81418071 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1468 420 20 0 0 chr1 115777361 115777409 -81418023 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1468 645 298 79 58 chr1 115777782 115778074 -81417358 - MLT1B LTR MaLR -18 372 75 4 1468 1185 296 16 25 chr1 115778326 115778645 -81416787 + MTE2b LTR MaLR 27 342 -37 4 1468 297 0 0 0 chr1 115778647 115778680 -81416752 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1468 806 341 25 46 chr1 115779840 115780120 -81415312 + B4 SINE B4 1 274 -18 4 1468 323 23 23 0 chr1 115780135 115780179 -81415253 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1468 416 317 137 10 chr1 115780179 115780383 -81415049 - MLT1A0 LTR MaLR -26 339 110 4 1468 432 0 0 0 chr1 115780445 115780493 -81414939 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1468 411 119 0 0 chr1 115780910 115780977 -81414455 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1468 360 264 67 37 chr1 115781041 115781175 -81414257 - B4 SINE B4 -74 218 81 4 1468 270 0 0 0 chr1 115781178 115781208 -81414224 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 1468 878 259 21 17 chr1 115781229 115781469 -81413963 - Lx5 LINE L1 -76 6974 6734 4 1468 252 86 0 0 chr1 115782332 115782367 -81413065 + (CAT)n Simple_repeat Simple_repeat 3 37 0 4 1468 462 333 0 79 chr1 115782389 115782529 -81412903 + RSINE1 SINE B4 19 147 -18 4 1468 803 61 9 0 chr1 115782543 115782657 -81412775 + (TC)n Simple_repeat Simple_repeat 1 115 0 4 1468 252 0 0 0 chr1 115782657 115782684 -81412748 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1468 2781 105 2 8 chr1 115783149 115783551 -81411881 - MTB LTR MaLR 0 400 1 4 1468 432 292 101 56 chr1 115784301 115784479 -81410953 - B4A SINE B4 0 292 107 4 1468 359 130 0 18 chr1 115784492 115784547 -81410885 + RMER10A LTR ERVL 1 54 -388 4 1468 755 308 33 25 chr1 115784560 115784800 -81410632 - B4A SINE B4 -49 243 2 4 1468 1068 286 26 7 chr1 115784917 115785188 -81410244 - MTE2b LTR MaLR -95 284 9 4 1468 314 217 14 0 chr1 115785765 115785834 -81409598 - RMER15 LTR ERVL -103 472 403 4 1468 329 274 61 88 chr1 115785980 115786046 -81409386 + L1MA6 LINE L1 6052 6107 -193 4 1468 889 81 213 7 chr1 115786046 115786196 -81409236 - B2_Mm2 SINE B2 -14 181 1 4 1468 329 274 61 88 chr1 115786196 115786357 -81409075 + L1MA6 LINE L1 6108 6273 -27 4 1468 1289 218 74 37 chr1 115787523 115787875 -81407557 - MTEa LTR MaLR -3 376 12 4 1468 279 308 11 32 chr1 115788144 115788174 -81407258 - RSINE1 SINE B4 -10 155 126 4 1468 378 61 0 0 chr1 115788174 115788223 -81407209 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1468 279 308 11 32 chr1 115788223 115788286 -81407146 - RSINE1 SINE B4 -40 125 65 4 1468 216 170 0 0 chr1 115789022 115789075 -81406357 + CT-rich Low_complexity Low_complexity 2 54 0 4 1468 435 106 0 0 chr1 115789111 115789177 -81406255 + (TATG)n Simple_repeat Simple_repeat 1 66 0 4 1468 619 287 98 32 chr1 115789193 115789521 -81405911 - MTEa LTR MaLR -1 378 3 4 1468 946 301 33 64 chr1 115789728 115790087 -81405345 + ORR1E LTR MaLR 6 353 -6 4 1468 276 133 0 0 chr1 115790247 115790307 -81405125 + (A)n Simple_repeat Simple_repeat 1 60 0 4 1468 6320 83 44 1 chr1 115790495 115791319 -81404113 - L1_Mus2 LINE L1 0 6566 5712 4 1468 234 0 0 0 chr1 115791319 115791345 -81404087 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1468 6320 118 18 1 chr1 115791345 115792106 -81403326 - L1_Mus2 LINE L1 -172 5711 4939 4 1468 12471 25 1 0 chr1 115792092 115793626 -81401806 + L1Md_T LINE L1 4051 5586 -297 4 1468 9031 5 0 0 chr1 115793626 115794622 -81400810 + L1Md_T LINE L1 5587 6582 0 4 1468 10927 150 13 30 chr1 115794630 115796801 -81398631 - L1_Mus2 LINE L1 -937 4946 2812 4 1468 24923 73 2 63 chr1 115796798 115801697 -81393735 - L1Md_F3 LINE L1 0 6584 2002 4 1468 4369 81 3 2 chr1 115801691 115802331 -81393101 - L1_Mm LINE L1 -1635 4248 3608 4 1468 8528 77 4 2 chr1 115802330 115803555 -81391877 + L1_Mm LINE L1 2353 3580 -2303 4 1468 16000 102 35 3 chr1 115803552 115805768 -81389664 + L1Md_F2 LINE L1 2953 5199 -684 4 1468 567 0 0 0 chr1 115805768 115805831 -81389601 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4 1468 16000 102 35 3 chr1 115805831 115806165 -81389267 + L1Md_F2 LINE L1 5200 5584 -299 4 1468 7085 92 2 12 chr1 115806166 115807171 -81388261 + L1Md_F2 LINE L1 5588 6582 0 4 1468 642 95 0 0 chr1 115807261 115807356 -81388076 + (TC)n Simple_repeat Simple_repeat 1 95 0 4 1468 195 146 0 0 chr1 115807355 115807396 -81388036 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1468 237 399 5 72 chr1 115807514 115807722 -81387710 - B4 SINE B4 -98 194 1 4 1468 250 310 11 65 chr1 115808163 115808256 -81387176 + RSINE1 SINE B4 78 165 0 4 1468 23 33 0 0 chr1 115808321 115808351 -81387081 + AT_rich Low_complexity Low_complexity 1 30 0 4 1468 879 299 75 14 chr1 115808576 115808854 -81386578 + MTE2b LTR MaLR 16 310 -69 4 1468 2458 143 30 4 chr1 115808865 115809328 -81386104 - Lx3_Mus LINE L1 -991 4895 4421 4 1468 5844 156 44 19 chr1 115809317 115811279 -81384153 + Lx3_Mus LINE L1 4940 6964 -45 4 1468 198 0 0 0 chr1 115811301 115811323 -81384109 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1468 229 262 0 0 chr1 115814083 115814144 -81381288 + CT-rich Low_complexity Low_complexity 2 62 0 4 1468 656 313 35 85 chr1 115814194 115814477 -81380955 - B4 SINE B4 -18 274 6 4 1468 261 0 0 0 chr1 115815782 115815811 -81379621 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1468 672 328 51 17 chr1 115816153 115816445 -81378987 + RMER15 LTR ERVL 272 573 -2 4 1468 507 270 67 13 chr1 115816690 115816915 -81378517 - Charlie5 DNA MER1_type -20 2604 2368 4 1468 422 296 192 0 chr1 115817038 115817163 -81378269 + B3A SINE B2 3 151 -47 4 1468 375 23 0 0 chr1 115817166 115817210 -81378222 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1468 354 283 1 9 chr1 115817332 115817456 -81377976 + L1MA4A LINE L1 5652 5775 -516 4 1468 180 0 0 0 chr1 115817466 115817486 -81377946 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1468 264 117 26 97 chr1 115817507 115817621 -81377811 + (TATAA)n Simple_repeat Simple_repeat 1 106 0 4 1468 332 211 31 49 chr1 115817632 115817763 -81377669 + L1MA4A LINE L1 5820 5947 -365 4 1468 1642 241 21 8 chr1 115817979 115818368 -81377064 - RLTR28 LTR ERVL -130 394 1 4 1468 519 82 0 0 chr1 115818858 115818931 -81376501 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1468 637 256 19 25 chr1 115819055 115819215 -81376217 - B4 SINE B4 -129 163 5 4 1468 396 138 0 0 chr1 115819285 115819350 -81376082 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 4 1468 210 37 0 0 chr1 115819669 115819696 -81375736 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1468 345 279 42 75 chr1 115820938 115821058 -81374374 + ID_B1 SINE B4 109 224 0 4 1468 467 143 19 0 chr1 115821157 115821262 -81374170 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 4 1468 2373 44 3 0 chr1 115821556 115821850 -81373582 + L1Md_F2 LINE L1 6275 6569 -13 4 1468 235 391 17 17 chr1 115821926 115822043 -81373389 - L2b LINE L2 -30 3345 3229 4 1468 362 186 108 76 chr1 115822163 115822320 -81373112 - RLTR13D3 LTR ERVK -10 1104 943 5 1468 1121 78 12 0 chr1 115822481 115822647 -81372785 + L1_Mus1 LINE L1 6400 6567 0 5 1468 32 0 0 0 chr1 115822801 115822833 -81372599 + AT_rich Low_complexity Low_complexity 1 32 0 5 1468 270 0 0 0 chr1 115823282 115823312 -81372120 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1468 513 371 0 7 chr1 115823349 115823501 -81371931 - RSINE1 SINE B4 -10 155 5 5 1468 324 0 0 0 chr1 115823847 115823883 -81371549 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1468 530 207 46 52 chr1 115824797 115824970 -81370462 - Tigger7 DNA MER2_type -63 2428 2257 5 1468 297 0 0 0 chr1 115825668 115825701 -81369731 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1468 644 275 60 5 chr1 115826310 115826511 -81368921 - ID_B1 SINE B4 -8 216 5 5 1468 276 185 15 15 chr1 115827983 115828049 -81367383 - RMER10A LTR ERVL -16 426 361 5 1468 209 40 0 0 chr1 115828599 115828624 -81366808 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1468 889 86 22 33 chr1 115828624 115828805 -81366627 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 1468 228 100 0 0 chr1 115828822 115828862 -81366570 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 5 1468 942 117 0 0 chr1 115828862 115829041 -81366391 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1468 298 290 229 31 chr1 115829045 115829237 -81366195 - RMER15 LTR ERVL -57 518 289 5 1468 242 247 12 49 chr1 115829406 115829487 -81365945 + CT-rich Low_complexity Low_complexity 3 80 0 5 1468 1157 312 27 13 chr1 115829876 115830250 -81365182 + MTEa LTR MaLR 1 379 0 5 1468 180 97 0 0 chr1 115830589 115830620 -81364812 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1468 341 95 0 16 chr1 115831211 115831275 -81364157 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 1468 687 286 28 5 chr1 115831771 115831985 -81363447 + ID_B1 SINE B4 3 221 -3 5 1468 1157 284 75 21 chr1 115832061 115832445 -81362987 + MTD LTR MaLR 1 405 -14 5 1468 212 301 130 10 chr1 115832827 115832945 -81362487 + MIRb SINE MIR 51 184 -84 5 1468 762 319 48 4 chr1 115832963 115833234 -81362198 + B4 SINE B4 4 286 -6 5 1468 249 151 0 0 chr1 115833279 115833332 -81362100 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 5 1468 300 111 0 0 chr1 115833628 115833673 -81361759 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1468 4739 34 19 0 chr1 115833675 115834239 -81361193 - L1Md_T LINE L1 0 6582 6008 5 1468 4212 29 0 0 chr1 115834239 115834757 -81360675 + L1_Mm LINE L1 4641 5158 -725 5 1468 458 371 75 37 chr1 115835453 115835775 -81359657 + ORR1E LTR MaLR 18 351 -8 5 1468 388 346 326 44 chr1 115835974 115836197 -81359235 - B4A SINE B4 -4 288 3 5 1468 408 296 51 38 chr1 115836247 115836447 -81358985 + MIRb SINE MIR 1 213 -55 5 1468 1204 266 96 13 chr1 115836862 115837236 -81358196 - MTD LTR MaLR -14 405 1 5 1468 465 19 0 0 chr1 115837273 115837327 -81358105 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1468 191 388 96 15 chr1 115837542 115837741 -81357691 - MIRb SINE MIR -32 236 22 5 1468 713 267 83 24 chr1 115837898 115838151 -81357281 - Lx6 LINE L1 -11 7449 7182 5 1468 347 304 178 42 chr1 115838824 115839088 -81356344 - RMER15 LTR ERVL -1 574 275 5 1468 525 16 0 0 chr1 115840460 115840522 -81354910 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1468 464 312 78 0 chr1 115840526 115840680 -81354752 - B3A SINE B2 -24 174 9 5 1468 661 335 125 23 chr1 115841149 115841628 -81353804 + MT2A LTR ERVL 4 531 -2 5 1468 301 272 48 0 chr1 115841864 115841967 -81353465 + L1MA4A LINE L1 5824 5931 -372 5 1468 305 263 7 0 chr1 115843197 115843334 -81352098 + CT-rich Low_complexity Low_complexity 1 138 0 5 1468 463 294 8 0 chr1 115843425 115843536 -81351896 + ORR1E LTR MaLR 5 116 -243 5 1468 893 128 28 14 chr1 115843536 115843679 -81351753 + RMER13A LTR ERVK 4 148 -712 5 1468 244 330 0 0 chr1 115843796 115843884 -81351548 - MLT1A0 LTR MaLR -17 348 261 5 1468 383 256 71 50 chr1 115844344 115844484 -81350948 + RMER15 LTR ERVL 431 573 -2 5 1468 1405 168 69 38 chr1 115844770 115844857 -81350575 + L1_Mur2 LINE L1 987 1078 -6008 5 1468 3024 61 5 10 chr1 115844857 115845253 -81350179 - MTA_Mm LTR MaLR 0 396 3 5 1468 6467 92 52 73 chr1 115845255 115846377 -81349055 - MTA_Mm-int LTR MaLR 0 1098 1 5 1468 2654 70 3 17 chr1 115846377 115846728 -81348704 - MTA_Mm LTR MaLR 0 346 1 5 1468 2150 154 48 18 chr1 115846728 115847328 -81348104 + L1_Mur2 LINE L1 1079 1689 -4188 5 1468 6190 202 42 33 chr1 115847314 115849103 -81346329 + L1_Mur2 LINE L1 3892 5608 -272 5 1468 1853 213 59 5 chr1 115849103 115849509 -81345923 + Lx4A LINE L1 6622 7049 -9 5 1468 810 58 0 0 chr1 115849558 115849662 -81345770 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 5 1468 263 363 65 69 chr1 115849962 115850193 -81345239 - MLT1I LTR MaLR -2 409 180 5 1468 852 144 43 12 chr1 115850653 115850815 -81344617 - URR1B DNA MER1_type 0 225 59 5 1468 570 326 15 51 chr1 115850839 115851036 -81344396 + B4A SINE B4 103 292 0 5 1468 374 313 82 66 chr1 115851729 115852012 -81343420 + ORR1E LTR MaLR 1 272 -98 5 1468 328 279 0 12 chr1 115852189 115852269 -81343163 - RMER10A LTR ERVL -363 79 1 5 1468 311 208 88 13 chr1 115852404 115852497 -81342935 - MTEb LTR MaLR -2 377 270 5 1468 306 298 96 3 chr1 115852880 115852985 -81342447 - MTEb LTR MaLR -268 111 1 5 1468 544 299 35 23 chr1 115854130 115854301 -81341131 + MTEb LTR MaLR 6 178 -201 5 1468 402 302 0 30 chr1 115854322 115854455 -81340977 + MTEb LTR MaLR 167 295 -84 5 1468 1754 157 102 29 chr1 115854506 115854887 -81340545 - RLTR9E LTR ERVK 0 409 1 5 1468 426 106 8 0 chr1 115854887 115854975 -81340457 - ETnERV2-int LTR ERVK -24 7382 7327 5 1468 1968 193 130 13 chr1 115854976 115855454 -81339978 - RLTR13D6 LTR ERVK -368 534 1 5 1468 1307 133 62 4 chr1 115855477 115855703 -81339729 - ETnERV3-int LTR ERVK -41 5767 5529 5 1468 313 141 0 59 chr1 115855716 115855784 -81339648 - RLTR45-int LTR ERVK -1172 6072 6009 5 1468 1291 149 29 162 chr1 115855853 115856198 -81339234 - ETnERV2-int LTR ERVK -981 6425 6127 5 1468 2543 202 49 58 chr1 115856169 115856967 -81338465 - ETnERV2-int LTR ERVK -1705 3139 2473 5 1468 6010 63 8 3 chr1 115856967 115857741 -81337691 - L1Md_F2 LINE L1 -3 6579 5802 5 1468 3335 176 68 23 chr1 115857741 115858682 -81336750 - ETnERV2-int LTR ERVK -3321 4085 2488 5 1468 1239 211 217 43 chr1 115858699 115859178 -81336254 - ETnERV2-int LTR ERVK -4419 2987 2426 5 1468 1676 185 86 37 chr1 115859181 115859646 -81335786 - ETnERV2-int LTR ERVK -5329 2077 1590 5 1468 262 125 0 0 chr1 115859631 115859679 -81335753 - RMER16-int LTR ERVK -5218 188 141 5 1468 325 216 0 13 chr1 115860112 115860187 -81335245 - RLTR45-int LTR ERVK -5080 2164 2091 5 1468 848 204 18 116 chr1 115860180 115860507 -81334925 - MMETn-int LTR ERVK -4548 296 2 5 1468 1635 146 144 33 chr1 115860509 115860877 -81334555 - RLTR9E LTR ERVK 0 409 1 5 1468 1661 234 20 12 chr1 115860877 115861276 -81334156 - BGLII_B LTR ERVK -38 403 2 5 1468 183 80 0 0 chr1 115861589 115861614 -81333818 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1468 521 94 12 0 chr1 115861614 115861699 -81333733 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1468 413 317 16 8 chr1 115861701 115861822 -81333610 - B4A SINE B4 -18 274 153 5 1468 361 276 200 56 chr1 115862631 115862846 -81332586 + RMER4B LTR ERVK 157 402 -183 5 1468 784 330 36 25 chr1 115864422 115864678 -81330754 - B4 SINE B4 -7 285 29 5 1468 270 303 55 21 chr1 115864973 115865118 -81330314 - MERVL_2A-int LTR ERVL -1482 4279 4130 5 1468 885 202 17 0 chr1 115865948 115866126 -81329306 - MTEb LTR MaLR -17 362 182 5 1468 285 213 27 0 chr1 115866989 115867064 -81328368 + URR1B DNA MER1_type 95 171 -54 5 1468 319 276 46 0 chr1 115867188 115867275 -81328157 - RMER4B LTR ERVK -152 433 343 5 1468 279 0 0 0 chr1 115867520 115867551 -81327881 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 183 480 215 30 17 chr1 115867643 115867824 -81327608 - RMER4B LTR ERVK -205 261 47 5 1469 227 176 78 0 chr1 115867816 115867867 -81327565 + URR1B DNA MER1_type 165 219 -6 5 1469 1213 206 87 14 chr1 115867935 115868128 -81327304 - ORR1C2 LTR MaLR 0 384 183 5 1469 699 12 0 0 chr1 115868128 115868208 -81327224 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1469 1213 206 87 14 chr1 115868208 115868290 -81327142 - ORR1C2 LTR MaLR -202 182 91 5 1469 808 340 41 8 chr1 115868299 115868545 -81326887 + B4A SINE B4 37 290 -2 5 1469 816 265 35 15 chr1 115868613 115868816 -81326616 + MTEa LTR MaLR 173 379 0 5 1469 306 353 79 43 chr1 115869132 115869410 -81326022 + B4 SINE B4 2 289 -3 5 1469 6627 101 5 15 chr1 115870530 115871893 -81323539 + L1_Mus2 LINE L1 5252 6566 0 5 1469 861 129 37 0 chr1 115871891 115872054 -81323378 + GA-rich Low_complexity Low_complexity 4 172 0 5 1469 1960 279 83 95 chr1 115872130 115872546 -81322886 - L1_Mus1 LINE L1 -3 6973 6509 5 1469 6995 90 5 7 chr1 115872546 115873881 -81321551 - L1_Mus1 LINE L1 0 6567 5289 5 1469 7570 38 8 3 chr1 115873882 115874855 -81320577 - L1Md_F3 LINE L1 0 6584 5632 5 1469 609 40 0 0 chr1 115874855 115874931 -81320501 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1469 7570 67 3 7 chr1 115874931 115875561 -81319871 - L1Md_F3 LINE L1 -252 5631 5006 5 1469 1355 201 7 73 chr1 115876147 115876448 -81318984 - ORR1A4 LTR MaLR -48 281 1 5 1469 591 318 135 37 chr1 115877422 115877667 -81317765 - B4A SINE B4 -15 277 9 5 1469 510 280 69 54 chr1 115878263 115878467 -81316965 - B3 SINE B2 -7 209 3 5 1469 272 415 15 83 chr1 115878514 115878719 -81316713 - B4A SINE B4 0 292 102 5 1469 4299 259 60 43 chr1 115878724 115880194 -81315238 + Lx7 LINE L1 6195 7689 -7 5 1469 6727 83 15 6 chr1 115880211 115881183 -81314249 + L1_Mus1 LINE L1 5587 6567 0 5 1469 1047 224 13 5 chr1 115881761 115881985 -81313447 - MTC LTR MaLR 0 421 196 5 1469 201 182 0 0 chr1 115881987 115882042 -81313390 + CT-rich Low_complexity Low_complexity 2 56 0 5 1469 468 252 73 7 chr1 115882045 115882181 -81313251 - B1_Mus1 SINE Alu 0 148 4 5 1469 697 233 99 11 chr1 115882182 115882373 -81313059 - MTC LTR MaLR -211 210 3 5 1469 586 316 100 58 chr1 115882649 115883099 -81312333 - Lx8 LINE L1 -5 7468 7000 5 1469 542 327 80 91 chr1 115883242 115883518 -81311914 + B4 SINE B4 6 278 -14 5 1469 362 326 0 0 chr1 115884490 115884582 -81310850 + B4A SINE B4 2 93 -199 5 1469 348 72 43 0 chr1 115884588 115884657 -81310775 + (CAAAA)n Simple_repeat Simple_repeat 4 75 0 5 1469 767 166 0 6 chr1 115887093 115887251 -81308181 + (TG)n Simple_repeat Simple_repeat 2 158 0 5 1469 922 317 18 15 chr1 115887311 115887583 -81307849 - B4 SINE B4 -14 278 6 5 1469 481 308 89 6 chr1 115887944 115888101 -81307331 + B4A SINE B4 20 189 -103 5 1469 649 267 61 12 chr1 115888107 115888270 -81307162 + B3 SINE B2 21 191 -25 6 1469 255 234 0 0 chr1 115889978 115890042 -81305390 + A-rich Low_complexity Low_complexity 1 64 0 6 1469 354 281 75 90 chr1 115890051 115890184 -81305248 + RSINE1 SINE B4 2 132 -33 6 1469 259 238 16 0 chr1 115890200 115890263 -81305169 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1469 1180 61 6 12 chr1 115890264 115890431 -81305001 + (GAAA)n Simple_repeat Simple_repeat 1 166 0 6 1469 317 202 0 22 chr1 115890792 115890864 -81304568 - B4 SINE B4 -142 82 15 6 1469 315 294 12 0 chr1 115890886 115890971 -81304461 + MER45C DNA Tip100 104 189 -764 6 1469 393 109 0 0 chr1 115891142 115891206 -81304226 + (CTA)n Simple_repeat Simple_repeat 1 64 0 6 1469 645 279 91 38 chr1 115891499 115891763 -81303669 + B4 SINE B4 5 282 -10 6 1469 252 300 0 65 chr1 115891764 115891847 -81303585 - RMER12 LTR ERVK -473 849 770 6 1469 651 46 55 0 chr1 115891847 115891956 -81303476 + (CAGAGA)n Simple_repeat Simple_repeat 6 120 0 6 1469 252 300 0 65 chr1 115891956 115891979 -81303453 - RMER12 LTR ERVK -553 769 750 6 1469 261 349 0 0 chr1 115892197 115892303 -81303129 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1469 576 327 64 73 chr1 115893418 115893660 -81301772 - RLTR18B LTR ERVK 0 512 278 6 1469 1404 70 27 0 chr1 115893660 115893847 -81301585 + B2_Mm1a SINE B2 2 193 0 6 1469 576 338 40 75 chr1 115893847 115894289 -81301143 - RLTR18B LTR ERVK -293 323 14 6 1469 1039 286 16 4 chr1 115894301 115894554 -81300878 + B4 SINE B4 27 282 -10 6 1469 435 38 0 0 chr1 115894559 115894612 -81300820 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1469 1670 246 106 62 chr1 115894879 115895558 -81299874 - Lx8 LINE L1 -7 7466 6758 6 1469 21 57 0 0 chr1 115895650 115895685 -81299747 + AT_rich Low_complexity Low_complexity 1 35 0 6 1469 438 69 0 0 chr1 115895716 115895774 -81299658 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1469 420 20 0 0 chr1 115895824 115895873 -81299559 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1469 236 269 15 0 chr1 115897111 115897178 -81298254 - Lx8 LINE L1 -260 7213 7146 6 1469 2054 155 38 15 chr1 115897319 115897712 -81297720 + RLTR31_Mm LTR ERVK 1 402 -159 6 1469 243 0 0 0 chr1 115897991 115898018 -81297414 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1469 447 35 0 0 chr1 115898018 115898074 -81297358 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1469 348 326 21 0 chr1 115898261 115898356 -81297076 - B4A SINE B4 -192 100 4 6 1469 252 0 0 0 chr1 115898757 115898785 -81296647 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1469 267 242 15 0 chr1 115899045 115899111 -81296321 + ORR1D2 LTR MaLR 304 370 0 6 1469 196 292 113 10 chr1 115899513 115899610 -81295822 - MIRm SINE MIR -123 153 47 6 1469 346 353 0 8 chr1 115900030 115900147 -81295285 + Tigger5 DNA MER2_type 2 117 -2289 6 1469 298 328 152 61 chr1 115900153 115900416 -81295016 + MLT2B3 LTR ERVL 268 554 0 6 1469 528 359 14 34 chr1 115900676 115900970 -81294462 + B4 SINE B4 3 290 -2 6 1469 4523 57 3 3 chr1 115901127 115901694 -81293738 - L1Md_F2 LINE L1 -2 6580 6014 6 1469 3568 104 38 2 chr1 115902802 115903323 -81292109 - Lx3_Mus LINE L1 0 7009 6470 6 1469 3601 84 4 0 chr1 115903323 115903859 -81291573 + L1_Mur1 LINE L1 3551 4088 -1798 6 1469 371 250 0 12 chr1 115904570 115904655 -81290777 + B4 SINE B4 3 86 -206 6 1469 218 95 24 0 chr1 115904672 115904714 -81290718 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1469 362 286 238 22 chr1 115904715 115904883 -81290549 + B4 SINE B4 70 272 -20 6 1469 265 242 32 16 chr1 115905090 115905153 -81290279 - B4A SINE B4 -204 88 25 6 1469 340 314 50 8 chr1 115905180 115905299 -81290133 + MLT-int LTR MaLR 1612 1735 0 6 1469 450 284 65 45 chr1 115905360 115905559 -81289873 + B3 SINE B2 1 203 -13 6 1469 335 100 0 0 chr1 115905559 115905602 -81289830 + HAL1-3A_ME LINE L1 1974 2016 -842 6 1469 297 0 0 0 chr1 115905602 115905635 -81289797 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1469 812 274 37 17 chr1 115906208 115906449 -81288983 + MTE2b LTR MaLR 8 253 -126 6 1469 315 65 0 0 chr1 115907239 115907285 -81288147 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1469 318 364 0 27 chr1 115907348 115907458 -81287974 - B3A SINE B2 -90 108 2 6 1469 427 171 24 12 chr1 115908090 115908173 -81287259 - ID_B1 SINE B4 -1 223 140 6 1469 235 296 155 9 chr1 115908193 115908309 -81287123 - RLTR24 LTR ERV1 -12 517 385 6 1469 284 345 27 87 chr1 115908446 115908630 -81286802 - RLTR24 LTR ERV1 -356 173 1 6 1469 328 315 93 0 chr1 115908652 115908760 -81286672 - ID_B1 SINE B4 -105 119 2 6 1469 409 279 58 121 chr1 115908784 115909008 -81286424 - MTEa LTR MaLR -3 376 167 6 1469 30 27 0 0 chr1 115909022 115909059 -81286373 + AT_rich Low_complexity Low_complexity 1 37 0 6 1469 517 278 103 49 chr1 115909059 115909263 -81286169 - B3A SINE B2 0 216 2 6 1469 269 385 33 22 chr1 115909263 115909441 -81285991 - MTEa LTR MaLR -199 180 1 6 1469 308 312 156 16 chr1 115909541 115909733 -81285699 + MIR SINE MIR 44 262 0 6 1469 366 42 0 0 chr1 115910430 115910478 -81284954 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1469 497 311 13 33 chr1 115911066 115911219 -81284213 + RSINE1 SINE B4 2 151 -14 6 1469 3471 74 4 2 chr1 115911424 115911884 -81283548 - L1_Mus1 LINE L1 0 6567 6107 6 1469 5683 96 2 1 chr1 115911884 115912895 -81282537 + L1_Mus1 LINE L1 5028 6038 -528 6 1469 2661 232 47 43 chr1 115913070 115913714 -81281718 + RMER13B LTR ERVK 1 646 -262 6 1469 3261 181 10 24 chr1 115913714 115913986 -81281446 - L1_Mur2 LINE L1 -520 5357 5086 6 1469 1187 52 13 0 chr1 115913986 115914140 -81281292 + L1_Mus1 LINE L1 6408 6563 -4 6 1469 3261 181 10 24 chr1 115914140 115914569 -81280863 - L1_Mur2 LINE L1 -792 5085 4666 6 1469 4258 113 4 0 chr1 115914564 115915404 -81280028 + L1_Mus4 LINE L1 5372 6217 -419 6 1469 853 186 0 47 chr1 115915402 115915594 -81279838 - L1_Mm LINE L1 -890 4993 4811 6 1469 2606 119 29 7 chr1 115915594 115916009 -81279423 + L1_Mus4 LINE L1 6213 6636 0 6 1469 2411 203 0 29 chr1 115916009 115916522 -81278910 + Lx2 LINE L1 5293 5790 -93 6 1469 3773 125 32 13 chr1 115916540 115917164 -81278268 + L1_Mus3 LINE L1 5997 6632 -6 6 1469 6535 165 18 3 chr1 115917161 115918316 -81277116 + Lx2 LINE L1 5823 6995 -2 6 1469 618 300 62 14 chr1 115918351 115918719 -81276713 + Lx8 LINE L1 5013 5398 -482 6 1469 267 79 0 0 chr1 115918724 115918762 -81276670 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1469 429 282 34 27 chr1 115918828 115918974 -81276458 + B1F2 SINE Alu 3 149 0 6 1469 456 266 7 7 chr1 115918992 115919147 -81276285 + L1M3 LINE L1 5476 5630 -538 6 1469 343 219 0 0 chr1 115919158 115919231 -81276201 + Lx8 LINE L1 5838 5910 -1563 6 1469 478 129 26 14 chr1 115919270 115919382 -81276050 + RLTR13D4 LTR ERVK 833 952 -81 6 1469 344 40 0 20 chr1 115919382 115919433 -81275999 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 6 1469 344 264 18 70 chr1 115919440 115919456 -81275976 + RLTR13D4 LTR ERVK 1007 1022 -92 6 1469 1137 95 0 0 chr1 115919456 115919603 -81275829 - B1_Mm SINE Alu 0 147 1 6 1469 559 156 21 10 chr1 115919603 115919700 -81275732 + RLTR13D4 LTR ERVK 936 1033 0 6 1469 499 281 0 0 chr1 115919758 115919893 -81275539 - RMER15-int LTR ERVL -2352 2647 2513 6 1469 1499 208 103 0 chr1 115919923 115920235 -81275197 + RLTR33 LTR ERVK 335 678 0 6 1469 285 208 0 0 chr1 115920236 115920284 -81275148 - MTE2b LTR MaLR -314 65 18 6 1469 387 113 0 0 chr1 115920448 115920519 -81274913 + (TTTTTG)n Simple_repeat Simple_repeat 6 76 0 6 1469 1099 88 0 13 chr1 115920519 115920668 -81274764 - B1_Mm SINE Alu 0 147 1 6 1469 527 254 68 0 chr1 115922627 115922745 -81272687 - MTE-int LTR MaLR -522 1058 933 6 1469 736 332 61 61 chr1 115922753 115923099 -81272333 + ORR1E LTR MaLR 5 350 -9 6 1469 1077 250 82 49 chr1 115923105 115923433 -81271999 + ORR1D1 LTR MaLR 3 341 -33 6 1469 1121 310 234 12 chr1 115923416 115923985 -81271447 - MTE-int LTR MaLR -735 845 151 6 1469 309 51 0 0 chr1 115924070 115924109 -81271323 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1469 754 333 40 42 chr1 115924625 115924979 -81270453 + MER89 LTR ERV1 205 557 -2 6 1469 431 280 199 18 chr1 115925483 115925654 -81269778 + B3 SINE B2 2 203 -13 6 1469 243 304 23 81 chr1 115925898 115925984 -81269448 + RSINE1 SINE B4 85 165 0 6 1469 39439 5 1 6 chr1 115926082 115932694 -81262738 - L1Md_A LINE L1 0 6582 7 6 1469 1007 242 86 3 chr1 115932811 115933117 -81262315 - Lx2B LINE L1 -3 7006 6673 6 1469 2740 196 33 0 chr1 115933107 115933786 -81261646 - Lx2B LINE L1 -1032 5968 5271 6 1469 215 132 26 0 chr1 115934142 115934180 -81261252 + G-rich Low_complexity Low_complexity 6 44 0 6 1469 314 273 33 22 chr1 115934204 115934294 -81261138 - B4A SINE B4 -199 93 3 6 1469 671 328 30 17 chr1 115935102 115935335 -81260097 + B4A SINE B4 5 240 -52 6 1469 180 312 45 30 chr1 115935375 115935441 -81259991 + MIR3 SINE MIR 110 176 -32 6 1469 592 339 43 0 chr1 115935649 115935835 -81259597 + B4A SINE B4 6 199 -93 6 1469 1132 267 86 14 chr1 115936017 115936367 -81259065 - MTEb LTR MaLR -4 375 1 6 1469 6333 118 32 19 chr1 115937013 115938147 -81257285 - Lx LINE L1 -7 6647 5499 6 1469 229 255 0 0 chr1 115938140 115938191 -81257241 + L1_Mur1 LINE L1 5485 5535 -351 6 1469 445 174 40 71 chr1 115938326 115938524 -81256908 - RMER17C LTR ERVK -135 275 84 6 1469 524 360 44 13 chr1 115938538 115938776 -81256656 - B4A SINE B4 -41 251 11 6 1469 1087 67 0 0 chr1 115938820 115938955 -81256477 + B1_Mm SINE Alu 1 135 -12 6 1469 682 11 11 11 chr1 115938956 115939044 -81256388 + (CAAAA)n Simple_repeat Simple_repeat 2 89 0 6 1469 200 100 0 24 chr1 115939057 115939098 -81256334 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 6 1469 216 97 0 0 chr1 115939598 115939629 -81255803 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1469 277 362 28 16 chr1 115939641 115939765 -81255667 + B4 SINE B4 4 125 -167 6 1469 23 0 0 0 chr1 115939830 115939853 -81255579 + AT_rich Low_complexity Low_complexity 1 23 0 6 1469 257 256 115 0 chr1 115939855 115939933 -81255499 + Lx8 LINE L1 6689 6775 -698 6 1469 26 0 0 0 chr1 115941135 115941161 -81254271 + AT_rich Low_complexity Low_complexity 1 26 0 7 1469 954 150 0 0 chr1 115941534 115941701 -81253731 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 7 1469 22 35 0 0 chr1 115942100 115942129 -81253303 + AT_rich Low_complexity Low_complexity 1 29 0 7 1469 953 321 44 6 chr1 115942612 115942953 -81252479 + Lx5 LINE L1 6655 7008 -42 7 1469 528 176 0 0 chr1 115942959 115943061 -81252371 + (TA)n Simple_repeat Simple_repeat 2 103 0 7 1469 1432 295 38 17 chr1 115943097 115943385 -81252047 - L1_Mur3 LINE L1 -3514 2366 2079 7 1469 324 0 0 0 chr1 115943385 115943421 -81252011 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1469 936 27 0 0 chr1 115943423 115943534 -81251898 + (GA)n Simple_repeat Simple_repeat 2 112 0 7 1469 1612 287 43 23 chr1 115943534 115943987 -81251445 - L1_Mur3 LINE L1 -3802 2078 1607 7 1469 666 61 0 57 chr1 115944005 115944110 -81251322 - BC1_Mm scRNA scRNA -53 99 1 7 1469 256 246 116 0 chr1 115944052 115944121 -81251311 - ZP3AR Satellite Satellite -108 104 28 7 1469 526 320 21 34 chr1 115944221 115944457 -81250975 - Lx6 LINE L1 -49 7411 7179 7 1469 1332 333 64 11 chr1 115944493 115944960 -81250472 + Lx5 LINE L1 6453 6944 -106 7 1469 339 121 0 0 chr1 115944966 115945024 -81250408 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1469 22 0 0 0 chr1 115945089 115945111 -81250321 + AT_rich Low_complexity Low_complexity 1 22 0 7 1469 286 356 60 15 chr1 115945368 115945502 -81249930 + B4A SINE B4 1 140 -152 7 1469 293 82 0 20 chr1 115945540 115945590 -81249842 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1469 1123 288 70 15 chr1 115945674 115946343 -81249089 + Lx5 LINE L1 6159 6884 -576 7 1469 21 36 0 0 chr1 115946379 115946407 -81249025 + AT_rich Low_complexity Low_complexity 1 28 0 7 1469 223 289 23 15 chr1 115946503 115946633 -81248799 + T-rich Low_complexity Low_complexity 2 132 0 7 1469 210 150 0 0 chr1 115946788 115946828 -81248604 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1469 419 274 30 15 chr1 115947386 115947586 -81247846 - L1_Mur3 LINE L1 -2293 3587 3385 7 1469 23 33 0 0 chr1 115947806 115947836 -81247596 + AT_rich Low_complexity Low_complexity 1 30 0 7 1469 319 330 39 0 chr1 115947868 115947971 -81247461 - B3A SINE B2 -42 156 50 7 1469 205 273 45 15 chr1 115949541 115949608 -81245824 - L2a LINE L2 -10 3416 3348 7 1469 752 298 4 47 chr1 115949927 115950256 -81245176 - BGLII_B LTR ERVK -21 420 5 7 1469 273 286 35 12 chr1 115950379 115950464 -81244968 + PB1D10 SINE Alu 29 115 -2 7 1469 20154 199 27 14 chr1 115950689 115953285 -81242147 + Lx2 LINE L1 837 3493 -2393 7 1469 225 0 0 0 chr1 115953285 115953310 -81242122 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 7 1469 20154 200 30 17 chr1 115953310 115955371 -81240061 + Lx2 LINE L1 3494 5565 -321 7 1469 180 0 0 0 chr1 115955371 115955391 -81240041 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1469 20154 212 114 17 chr1 115955391 115956142 -81239290 + Lx2 LINE L1 5566 6401 -596 7 1469 336 24 0 0 chr1 115956144 115956185 -81239247 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1469 1645 169 3 35 chr1 115956211 115956530 -81238902 + Lx2 LINE L1 6687 6995 -13 7 1469 252 0 0 0 chr1 115956530 115956558 -81238874 + (CTA)n Simple_repeat Simple_repeat 3 30 0 7 1469 318 106 0 0 chr1 115956558 115956605 -81238827 + (TAA)n Simple_repeat Simple_repeat 1 47 0 7 1469 27 0 0 0 chr1 115956810 115956837 -81238595 + AT_rich Low_complexity Low_complexity 1 27 0 7 1469 432 0 0 0 chr1 115956847 115956895 -81238537 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1469 3155 179 54 14 chr1 115956948 115957861 -81237571 + Lx2 LINE L1 5302 6250 -747 7 1469 3812 203 41 56 chr1 115957864 115958758 -81236674 + RMER13B LTR ERVK 1 881 -27 7 1469 3814 197 0 22 chr1 115958780 115959547 -81235885 + Lx2 LINE L1 6247 6996 -1 7 1469 780 307 23 5 chr1 115959563 115959782 -81235650 - MTEa LTR MaLR -141 238 16 7 1469 955 264 56 16 chr1 115960317 115960567 -81234865 + Lx8 LINE L1 7112 7371 -102 7 1469 1090 179 0 63 chr1 115960594 115960832 -81234600 - L1_Mm LINE L1 -1797 4086 3864 7 1469 31829 50 54 1 chr1 115960833 115965735 -81229697 + L1Md_F2 LINE L1 422 5586 -297 7 1469 7384 77 2 10 chr1 115965735 115966739 -81228693 + L1Md_F2 LINE L1 5587 6582 0 7 1469 3304 168 115 8 chr1 115966755 115967364 -81228068 - L1_Mur1 LINE L1 -2011 3875 3221 7 1469 680 59 20 0 chr1 115967364 115967465 -81227967 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 7 1469 3304 168 115 8 chr1 115967465 115967645 -81227787 - L1_Mur1 LINE L1 -2666 3220 3003 7 1469 4493 177 9 2 chr1 115967654 115968496 -81226936 + L1_Mur2 LINE L1 4068 4915 -962 7 1469 847 119 15 15 chr1 115968514 115968650 -81226782 + RMER16 LTR ERVK 398 533 0 7 1469 351 352 9 0 chr1 115969386 115969491 -81225941 + RSINE1 SINE B4 35 140 -25 7 1469 29 70 0 0 chr1 115969600 115969657 -81225775 + AT_rich Low_complexity Low_complexity 1 57 0 7 1469 28 48 0 0 chr1 115969705 115969747 -81225685 + AT_rich Low_complexity Low_complexity 1 42 0 7 1469 238 366 0 0 chr1 115969751 115969822 -81225610 + B4A SINE B4 1 71 -221 7 1469 213 94 0 0 chr1 115969953 115969985 -81225447 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1469 642 335 4 25 chr1 115971417 115971653 -81223779 - Tigger5 DNA MER2_type -48 2358 2128 7 1469 465 34 0 0 chr1 115971690 115971749 -81223683 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1469 4452 62 5 0 chr1 115971749 115972326 -81223106 + LTRIS_Mus LTR ERV1 3 582 -5 7 1469 517 306 96 5 chr1 115972326 115972513 -81222919 - B3 SINE B2 -10 206 3 7 1469 504 357 100 12 chr1 115972587 115972828 -81222604 + B4A SINE B4 28 289 -3 7 1469 4765 101 30 14 chr1 115972938 115973262 -81222170 + L1VL2 LINE L1 310 643 -5692 7 1469 2575 132 37 39 chr1 115973262 115973745 -81221687 + RLTR45 LTR ERVK 1 482 0 7 1469 4765 88 17 7 chr1 115973745 115974275 -81221157 + L1VL2 LINE L1 644 1177 -2438 7 1469 701 159 14 0 chr1 115974273 115974411 -81221021 + MusHAL1 LINE L1 1946 2085 -627 7 1469 297 0 0 0 chr1 115974981 115975014 -81220418 + (TTA)n Simple_repeat Simple_repeat 1 33 0 7 1469 5827 63 9 13 chr1 115975222 115976019 -81219413 - RLTR13C2 LTR ERVK -8 970 1 7 1469 445 378 101 22 chr1 115976021 115976289 -81219143 - B4 SINE B4 -2 290 2 7 1469 3010 78 2 0 chr1 115976368 115976767 -81218665 - L1_Mus1 LINE L1 0 6567 6168 7 1469 1308 91 0 0 chr1 115976767 115976943 -81218489 + L1_Mus1 LINE L1 6011 6186 -381 7 1469 949 289 93 64 chr1 115976991 115977335 -81218097 - ORR1E LTR MaLR 0 359 6 7 1469 562 236 88 54 chr1 115977412 115977707 -81217725 - L1M4 LINE L1 -785 5361 5057 7 1469 753 169 0 0 chr1 115977720 115977880 -81217552 + (TG)n Simple_repeat Simple_repeat 1 160 0 7 1469 327 323 21 31 chr1 115978012 115978204 -81217228 - L1M4 LINE L1 -1154 4992 4803 7 1469 258 132 0 0 chr1 115978213 115978266 -81217166 + (T)n Simple_repeat Simple_repeat 1 53 0 7 1469 301 132 0 0 chr1 115978269 115978322 -81217110 - B1_Mm SINE Alu 0 147 95 7 1469 254 56 0 0 chr1 115978311 115978347 -81217085 - PB1D9 SINE Alu -83 37 2 7 1469 243 0 0 0 chr1 115978720 115978747 -81216685 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1469 548 311 85 53 chr1 115978991 115979273 -81216159 + RMER15 LTR ERVL 273 563 -12 7 1469 239 255 97 10 chr1 115979268 115979371 -81216061 - MTE2a LTR MaLR -6 373 262 7 1469 3626 18 82 2 chr1 115979485 115979925 -81215507 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1469 277 327 9 103 chr1 115980010 115980126 -81215306 - B4A SINE B4 -147 145 41 7 1469 852 296 88 8 chr1 115980157 115980531 -81214901 + L1MA6 LINE L1 5696 6099 -201 7 1469 309 255 0 0 chr1 115980600 115980698 -81214734 + T-rich Low_complexity Low_complexity 1 98 0 7 1469 2418 203 53 113 chr1 115980705 115981442 -81213990 - Lx3B LINE L1 0 6973 6281 7 1469 24 32 0 0 chr1 115982134 115982165 -81213267 + AT_rich Low_complexity Low_complexity 1 31 0 7 1469 488 284 19 112 chr1 115982197 115982246 -81213186 - ID_B1 SINE B4 -2 222 180 7 1469 6862 41 0 4 chr1 115982246 115983081 -81212351 - L1Md_F2 LINE L1 -1 6581 5750 7 1469 488 284 19 112 chr1 115983081 115983245 -81212187 - ID_B1 SINE B4 -45 179 29 7 1469 213 269 0 152 chr1 115983185 115983264 -81212168 - ID4 SINE ID -2 81 15 7 1469 32 0 0 0 chr1 115983355 115983387 -81212045 + AT_rich Low_complexity Low_complexity 1 32 0 7 1469 458 33 17 0 chr1 115983444 115983504 -81211928 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1469 568 233 0 15 chr1 115983504 115983639 -81211793 - B1_Mus1 SINE Alu -7 141 9 7 1469 239 353 45 8 chr1 115983528 115983662 -81211770 - B4 SINE B4 -84 208 70 7 1469 335 333 40 48 chr1 115983702 115983724 -81211708 - B3A SINE B2 -73 125 104 7 1469 312 27 0 0 chr1 115983724 115983761 -81211671 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1469 335 333 40 48 chr1 115983761 115983864 -81211568 - B3A SINE B2 -95 103 1 7 1469 454 311 42 84 chr1 115983959 115984362 -81211070 + MTE2a LTR MaLR 22 396 -23 7 1469 295 216 13 13 chr1 115984957 115985032 -81210400 + (CCA)n Simple_repeat Simple_repeat 3 77 0 7 1469 354 61 0 0 chr1 115985034 115985083 -81210349 + (CAA)n Simple_repeat Simple_repeat 3 51 0 7 1469 809 287 23 44 chr1 115985106 115985411 -81210021 - RMER1B Other Other -330 736 250 7 1469 332 297 0 0 chr1 115985425 115985525 -81209907 - RMER1B Other Other -712 354 265 7 1469 343 295 45 168 chr1 115985774 115985953 -81209479 - RMER1B Other Other -909 157 1 7 1469 230 267 152 35 chr1 115986057 115986228 -81209204 + RMER17D2 LTR ERVK 168 358 -451 7 1469 245 281 24 24 chr1 115987012 115987096 -81208336 + LTR45 LTR ERV1 423 506 -19 7 1469 552 30 0 0 chr1 115987373 115987439 -81207993 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1469 363 73 0 0 chr1 115987623 115987678 -81207754 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1469 382 281 0 0 chr1 115987710 115987792 -81207640 - RSINE1 SINE B4 -78 87 6 7 1469 1247 268 46 42 chr1 115987977 115988453 -81206979 + RCHARR1 DNA MER1_type 269 746 -228 7 1469 237 161 0 0 chr1 115988458 115988504 -81206928 + CT-rich Low_complexity Low_complexity 13 58 0 7 1469 1374 41 0 0 chr1 115988504 115988673 -81206759 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 7 1469 677 261 22 0 chr1 115988696 115988834 -81206598 - B1_Mur2 SINE Alu -2 147 7 7 1469 286 257 139 28 chr1 115988840 115989020 -81206412 + RCHARR1 DNA MER1_type 736 935 -39 7 1469 2498 59 41 6 chr1 115989590 115989929 -81205503 + L1_Mus2 LINE L1 6216 6566 0 7 1469 186 43 0 0 chr1 115990410 115990433 -81204999 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1469 1186 62 0 0 chr1 115990959 115991105 -81204327 + B1_Mm SINE Alu 2 147 0 8 1469 839 273 44 5 chr1 115991576 115991782 -81203650 + MTEa LTR MaLR 117 330 -49 8 1469 196 294 58 77 chr1 115991925 115992080 -81203352 - L2 LINE L2 -840 2579 2428 8 1469 315 333 41 33 chr1 115992119 115992240 -81203192 - B4 SINE B4 0 292 171 8 1469 745 305 104 12 chr1 115992275 115992534 -81202898 - MTD LTR MaLR -14 405 123 8 1469 1059 344 34 19 chr1 115992544 115993097 -81202335 + Lx8 LINE L1 6326 6888 -808 8 1469 715 320 22 13 chr1 115993146 115993374 -81202058 + RMER15 LTR ERVL 343 572 -3 8 1469 504 72 0 0 chr1 115993940 115994009 -81201423 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1469 2000 155 3 6 chr1 115994045 115994401 -81201031 - L1_Mur2 LINE L1 -1703 4174 3820 8 1469 5895 65 13 9 chr1 115994420 115995202 -81200230 - L1Md_F3 LINE L1 -14 6570 5786 8 1469 227 217 30 71 chr1 115995209 115995308 -81200124 + Lx9 LINE L1 7550 7644 0 8 1469 262 0 53 0 chr1 115995334 115995372 -81200060 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1469 359 316 116 14 chr1 115995378 115995516 -81199916 + B4A SINE B4 94 245 -47 8 1469 269 278 77 77 chr1 115995619 115995775 -81199657 - RMER15 LTR ERVL -414 161 6 8 1469 200 339 0 71 chr1 115995904 115996031 -81199401 - L2b LINE L2 -213 3162 3045 8 1469 853 311 77 25 chr1 115996323 115996689 -81198743 - Lx8 LINE L1 -166 7307 6923 8 1469 462 18 0 0 chr1 115996961 115997016 -81198416 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1469 1567 151 47 0 chr1 115997042 115997321 -81198111 - RLTR20B2 LTR ERVK -142 418 127 8 1469 1898 163 32 0 chr1 115997321 115997634 -81197798 - Lx3A LINE L1 -215 6766 6444 8 1469 767 200 9 81 chr1 115997648 115997871 -81197561 + RMER3D-int LTR ERVK 2634 2840 -2 8 1469 698 169 58 0 chr1 115997873 115998027 -81197405 + RLTR31_Mm LTR ERVK 1 163 -398 8 183 10784 31 1 0 chr1 115998033 116000000 -81195432 - L1Md_T LINE L1 0 6582 4613 8 1470 3151 33 0 0 chr1 116000001 116000399 -81195033 - L1_Mm LINE L1 -1272 4611 4214 1 1470 15064 6 0 0 chr1 116000394 116002873 -81192559 - L1Md_A LINE L1 0 6582 4104 2 1470 4085 96 0 24 chr1 116002984 116003574 -81191858 - L1Md_F2 LINE L1 -2 6580 6005 3 1470 26626 74 4 9 chr1 116003605 116006937 -81188495 - L1Md_F2 LINE L1 0 6582 3280 4 1470 1907 72 4 15 chr1 116006937 116007206 -81188226 - L1Md_F3 LINE L1 0 6584 6319 5 1470 26626 74 4 11 chr1 116007206 116008397 -81187035 - L1Md_F2 LINE L1 -2604 3279 2083 4 1470 3138 28 0 89 chr1 116008397 116008825 -81186607 - RLTR10 LTR ERVK 0 390 1 6 1470 8242 21 3 2 chr1 116008827 116009821 -81185611 - RLTR10-int LTR ERVK -3 1984 990 6 1470 7481 29 26 0 chr1 116009900 116010825 -81184607 - RLTR10-int LTR ERVK -999 988 40 6 1470 3160 26 0 89 chr1 116010834 116011262 -81184170 - RLTR10 LTR ERVK 0 390 1 6 1470 5660 128 8 14 chr1 116011262 116012919 -81182513 - L1Md_F2 LINE L1 -3795 2088 446 4 1470 497 0 0 0 chr1 116012948 116013011 -81182421 - L1Md_F2 LINE L1 0 6582 6520 7 1470 615 48 36 0 chr1 116013011 116013094 -81182338 - L1Md_F2 LINE L1 -565 6017 5932 7 1470 1443 93 14 0 chr1 116013094 116013308 -81182124 + L1_Mm LINE L1 4487 4703 -1180 8 1470 1185 256 70 51 chr1 116013394 116013764 -81181668 - ORR1C2 LTR MaLR -7 377 1 9 1470 305 353 119 17 chr1 116015021 116015315 -81180117 - L2 LINE L2 -1015 2404 2081 1 1470 452 330 83 96 chr1 116015482 116015721 -81179711 - MLT1A0 LTR MaLR 0 374 137 1 1470 429 36 0 0 chr1 116015721 116015776 -81179656 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1470 444 330 83 96 chr1 116015776 116015911 -81179521 - MLT1A0 LTR MaLR -238 136 5 1 1470 5353 165 39 11 chr1 116016019 116017250 -81178182 - Lx LINE L1 0 6654 5390 1 1470 198 71 0 0 chr1 116017937 116017965 -81177467 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1470 27 0 0 0 chr1 116017967 116017994 -81177438 + AT_rich Low_complexity Low_complexity 1 27 0 1 1470 6485 102 21 8 chr1 116017999 116019254 -81176178 - L1_Mus1 LINE L1 -3 6564 5295 1 1470 6132 56 0 5 chr1 116019254 116020025 -81175407 - L1Md_F2 LINE L1 -2 6580 5814 1 1470 3868 178 26 2 chr1 116020025 116020362 -81175070 - L1_Mus1 LINE L1 -589 5294 5267 1 1470 387 270 47 7 chr1 116020370 116020519 -81174913 - L1Md_F LINE L1 -5798 721 567 1 1470 454 307 17 75 chr1 116020533 116021005 -81174427 - L1VL1 LINE L1 -6030 392 48 1 1470 360 0 0 0 chr1 116022029 116022069 -81173363 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1470 287 350 34 8 chr1 116022341 116022459 -81172973 - RLTR25B LTR ERVK -907 121 1 2 1470 266 202 196 28 chr1 116022459 116022516 -81172916 + MTD LTR MaLR 295 351 -68 2 1470 234 0 0 0 chr1 116022516 116022542 -81172890 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 2 1470 266 202 196 28 chr1 116022542 116022591 -81172841 + MTD LTR MaLR 352 418 -1 2 1470 474 49 0 0 chr1 116022956 116023017 -81172415 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1470 336 359 13 6 chr1 116023927 116024084 -81171348 - RMER15 LTR ERVL -11 564 407 2 1470 530 170 0 7 chr1 116024132 116024280 -81171152 + CT-rich Low_complexity Low_complexity 2 148 0 2 1470 39017 12 1 6 chr1 116024852 116031463 -81163969 - L1Md_A LINE L1 0 6582 7 2 1470 309 316 42 8 chr1 116031680 116031798 -81163634 - RMER20A LTR ERVK -392 124 3 2 1470 1041 271 67 72 chr1 116033320 116033694 -81161738 + MTE2a LTR MaLR 1 372 -7 2 1470 240 307 58 19 chr1 116034006 116034109 -81161323 + L2a LINE L2 3318 3424 -2 3 1470 378 315 47 20 chr1 116034299 116034448 -81160984 + ID_B1 SINE B4 9 161 -63 3 1470 282 294 47 38 chr1 116034378 116034484 -81160948 + PB1D10 SINE Alu 10 116 -1 3 1470 359 132 15 0 chr1 116036951 116037019 -81158413 + (TCC)n Simple_repeat Simple_repeat 1 69 0 3 1470 615 125 0 0 chr1 116037146 116037250 -81158182 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1470 635 136 0 9 chr1 116038264 116038375 -81157057 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 3 1470 712 360 55 23 chr1 116038393 116038649 -81156783 - B4 SINE B4 -10 282 19 3 1470 252 59 0 0 chr1 116039545 116039579 -81155853 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1470 41 36 0 0 chr1 116040220 116040275 -81155157 + AT_rich Low_complexity Low_complexity 1 55 0 3 1470 348 64 0 0 chr1 116040393 116040440 -81154992 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1470 2116 288 43 45 chr1 116040646 116040837 -81154595 - Lx9 LINE L1 -339 7305 7129 4 1470 594 0 0 0 chr1 116040837 116040903 -81154529 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 4 1470 1025 83 0 0 chr1 116040906 116041039 -81154393 - B1_Mus1 SINE Alu -12 136 4 4 1470 2116 288 43 45 chr1 116041039 116041762 -81153670 - Lx9 LINE L1 -516 7128 6388 4 1470 606 39 0 0 chr1 116042237 116042314 -81153118 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 1470 640 276 104 121 chr1 116042324 116042613 -81152819 - B4A SINE B4 0 292 9 4 1470 270 0 0 0 chr1 116043748 116043778 -81151654 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1470 650 144 0 39 chr1 116044000 116044130 -81151302 + Lx LINE L1 6530 6654 0 4 1470 326 80 0 20 chr1 116044137 116044188 -81151244 + (GAAAA)n Simple_repeat Simple_repeat 1 50 0 4 1470 1603 244 20 11 chr1 116044188 116044537 -81150895 + MTD LTR MaLR 68 419 0 4 1470 22 0 0 0 chr1 116045146 116045168 -81150264 + AT_rich Low_complexity Low_complexity 1 22 0 4 1470 21 0 0 0 chr1 116045647 116045668 -81149764 + AT_rich Low_complexity Low_complexity 1 21 0 5 1470 323 316 80 36 chr1 116046119 116046257 -81149175 - B4 SINE B4 0 292 149 5 1470 252 122 0 0 chr1 116046984 116047025 -81148407 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1470 204 163 0 0 chr1 116047951 116047994 -81147438 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1470 271 314 22 44 chr1 116047995 116048085 -81147347 - RSINE1 SINE B4 0 165 78 5 1470 310 356 86 18 chr1 116048121 116048284 -81147148 - B4A SINE B4 -117 175 2 5 1470 673 316 23 23 chr1 116048527 116048789 -81146643 + Charlie13b DNA Charlie 124 385 -127 5 1470 268 287 68 74 chr1 116048960 116049122 -81146310 + RMER15 LTR ERVL 1 161 -414 5 1470 10346 106 87 47 chr1 116049147 116050885 -81144547 + RLTR22_Mus LTR ERVK 1 1808 0 5 1470 409 232 0 24 chr1 116051645 116051729 -81143703 + B3 SINE B2 1 82 -134 5 1470 249 333 0 0 chr1 116052020 116052107 -81143325 + BC1_Mm scRNA scRNA 9 95 -57 5 1470 678 268 107 0 chr1 116052220 116052481 -81142951 + L1MA7 LINE L1 5691 5979 -312 6 1470 935 250 4 4 chr1 116052592 116052817 -81142615 - URR1B DNA MER1_type 0 225 1 6 1470 420 317 51 68 chr1 116054299 116054475 -81140957 + B4A SINE B4 2 174 -118 6 1470 364 301 18 20 chr1 116055512 116055768 -81139664 + L1MA5A LINE L1 5590 5880 -417 6 1470 486 0 0 0 chr1 116055837 116055891 -81139541 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1470 252 59 0 0 chr1 116055892 116055926 -81139506 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1470 197 33 33 0 chr1 116056078 116056108 -81139324 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1470 786 311 72 26 chr1 116056437 116056701 -81138731 - B4 SINE B4 -12 280 5 6 1470 232 317 85 75 chr1 116056812 116056980 -81138452 - L2a LINE L2 0 3426 3210 6 1470 320 306 66 63 chr1 116059211 116059577 -81135855 - IAPEz-int LTR ERVK -3195 3286 2920 6 1470 265 217 14 0 chr1 116060107 116060176 -81135256 - IAPEz-int LTR ERVK -4725 2194 2125 6 1470 28 29 0 0 chr1 116062855 116062890 -81132542 + AT_rich Low_complexity Low_complexity 1 35 0 7 1470 737 317 64 16 chr1 116062936 116063186 -81132246 + MTEa LTR MaLR 2 263 -116 7 1470 667 331 45 58 chr1 116063738 116064017 -81131415 + MTD LTR MaLR 1 275 -144 7 1470 1119 226 49 129 chr1 116064017 116064121 -81131311 - ORR1A4 LTR MaLR 0 394 337 7 1470 6066 80 1 7 chr1 116064121 116064930 -81130502 + L1_Mus2 LINE L1 5763 6566 0 7 1470 1225 211 14 73 chr1 116064930 116065217 -81130215 - ORR1A4 LTR MaLR -59 270 1 7 1470 249 293 9 57 chr1 116065217 116065317 -81130115 + MTD LTR MaLR 305 399 -20 7 1470 350 267 62 0 chr1 116065488 116065634 -81129798 + L1M4 LINE L1 2429 2583 -3563 7 1470 765 271 115 16 chr1 116065734 116065984 -81129448 - MTD LTR MaLR -14 405 134 7 1470 236 194 147 15 chr1 116066004 116066072 -81129360 - MTD LTR MaLR -340 81 5 7 1470 23 0 0 0 chr1 116066242 116066265 -81129167 + AT_rich Low_complexity Low_complexity 1 23 0 7 1470 1918 22 0 0 chr1 116066630 116066859 -81128573 + L1Md_F2 LINE L1 5358 5586 -297 7 1470 7910 52 4 2 chr1 116066860 116067852 -81127580 + L1Md_F2 LINE L1 5588 6581 -1 7 1470 230 301 21 77 chr1 116067893 116068127 -81127305 + L1M4 LINE L1 3634 3854 -2292 7 1470 1101 206 4 32 chr1 116068237 116068483 -81126949 + Lx2B LINE L1 6384 6622 -378 7 1470 2019 45 4 0 chr1 116068472 116068737 -81126695 - L1Md_F2 LINE L1 -578 6004 5739 8 1470 414 66 36 95 chr1 116068737 116068821 -81126611 + L1Md_F3 LINE L1 6492 6570 -14 8 1470 1303 253 50 42 chr1 116068859 116069016 -81126416 + Lx2B LINE L1 6609 6761 -239 7 1470 387 0 0 0 chr1 116069016 116069059 -81126373 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1470 1303 253 50 42 chr1 116069059 116069284 -81126148 + Lx2B LINE L1 6762 6994 -6 7 1470 268 293 108 66 chr1 116069319 116069681 -81125751 + L1M4 LINE L1 3977 4353 -1793 7 1470 649 130 0 0 chr1 116070873 116070965 -81124467 - B1_Mus1 SINE Alu -56 92 1 8 1470 413 227 0 110 chr1 116070881 116070990 -81124442 - MT2B LTR ERVL -361 240 144 8 1470 315 192 17 111 chr1 116070993 116071110 -81124322 - MYSERV16_I-int LTR ERVK -998 1328 1223 8 1470 1140 235 24 36 chr1 116071113 116071557 -81123875 - MYSERV16_I-int LTR ERVK -1972 354 1 8 1470 569 215 0 56 chr1 116072547 116072690 -81122742 - RLTR11A2 LTR ERVK 0 527 393 8 1470 258 337 0 0 chr1 116072905 116072991 -81122441 - MIRb SINE MIR -95 173 88 8 1470 36225 31 1 0 chr1 116073183 116080532 -81114900 - L1Md_T LINE L1 0 6585 1 8 1470 543 335 56 5 chr1 116080624 116080822 -81114610 - ID_B1 SINE B4 -16 208 1 8 1470 2769 148 33 4 chr1 116081309 116081797 -81113635 + RLTR22_Mur LTR ERVK 117 618 -1230 9 1470 2867 11 5 127 chr1 116081797 116082215 -81113217 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1470 6413 88 132 73 chr1 116082215 116083448 -81111984 + IAPEz-int LTR ERVK 8 1313 -5168 9 1470 27646 20 1 0 chr1 116083447 116086716 -81108716 + IAPEz-int LTR ERVK 3210 6481 0 9 1470 2867 11 5 127 chr1 116086716 116087134 -81108298 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1470 6260 139 59 65 chr1 116087134 116088372 -81107060 + RLTR22_Mur LTR ERVK 613 1843 -5 9 1470 685 298 73 9 chr1 116089865 116090085 -81105347 + B4 SINE B4 11 244 -48 9 1470 453 19 0 0 chr1 116090111 116090165 -81105267 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1470 2068 78 0 0 chr1 116090423 116090705 -81104727 - L1Md_F2 LINE L1 -1128 4755 4474 9 1470 5347 74 1 50 chr1 116090706 116090805 -81104627 + L1Md_F2 LINE L1 4805 4876 -1007 9 1470 388 92 0 0 chr1 116090805 116090870 -81104562 - L1Md_F2 LINE L1 -1 6581 6517 9 1470 5347 74 1 50 chr1 116090870 116091591 -81103841 + L1Md_F2 LINE L1 4877 5585 -298 9 1470 8022 49 2 3 chr1 116091592 116092587 -81102845 + L1Md_F2 LINE L1 5587 6580 -2 9 1470 463 308 76 8 chr1 116092623 116092754 -81102678 - RSINE1 SINE B4 -23 142 3 9 1470 422 310 43 60 chr1 116093796 116093981 -81101451 - B3A SINE B2 -16 182 1 9 1470 381 43 0 0 chr1 116094250 116094297 -81101135 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1470 318 348 0 0 chr1 116094580 116094669 -81100763 + RSINE1 SINE B4 55 143 -22 9 1470 225 207 17 0 chr1 116094670 116094728 -81100704 + A-rich Low_complexity Low_complexity 5 63 0 1 1470 515 321 115 40 chr1 116094833 116095180 -81100252 + MT2A LTR ERVL 5 377 -156 1 1470 189 0 0 0 chr1 116095212 116095233 -81100199 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1 1470 740 205 63 13 chr1 116095387 116095545 -81099887 + RMER10B LTR ERVL 1 166 -232 1 1470 1971 200 69 24 chr1 116095553 116095839 -81099593 + RLTR19-int LTR ERVK 2545 2840 -3297 1 1470 252 0 0 0 chr1 116095839 116095867 -81099565 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1470 1971 200 69 24 chr1 116095867 116096128 -81099304 + RLTR19-int LTR ERVK 2841 3116 -3021 1 1470 256 239 51 68 chr1 116096522 116096639 -81098793 + RLTR19-int LTR ERVK 3195 3309 -2828 1 1470 348 288 57 70 chr1 116096716 116096944 -81098488 + RMER17C-int LTR ERVK 2627 2851 -387 1 1470 914 207 83 0 chr1 116096950 116097143 -81098289 - RMER10B LTR ERVL -178 220 12 1 1470 1426 201 60 65 chr1 116097432 116097832 -81097600 + RMER10B LTR ERVL 1 398 0 1 1470 262 323 0 0 chr1 116097874 116097936 -81097496 - RSINE1 SINE B4 -98 67 6 1 1470 232 282 0 0 chr1 116097963 116098034 -81097398 + (TTTG)n Simple_repeat Simple_repeat 1 71 0 1 1470 261 0 0 0 chr1 116098217 116098246 -81097186 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1470 344 307 215 0 chr1 116098845 116099008 -81096424 - B3 SINE B2 -17 199 2 1 1470 691 301 5 113 chr1 116099423 116099644 -81095788 + ID_B1 SINE B4 11 207 -17 1 1470 1485 184 127 62 chr1 116099666 116100036 -81095396 + ORR1B1 LTR MaLR 1 394 0 1 1470 23 0 0 0 chr1 116100223 116100246 -81095186 + AT_rich Low_complexity Low_complexity 1 23 0 1 1470 8967 64 2 0 chr1 116101126 116102342 -81093090 - L1_Mm LINE L1 -649 5234 4017 1 1470 7647 46 12 3 chr1 116102342 116103294 -81092138 + L1Md_F2 LINE L1 5622 6581 -1 1 1470 207 69 0 0 chr1 116103301 116103330 -81092102 + (GTGTG)n Simple_repeat Simple_repeat 4 32 0 1 1470 231 61 0 0 chr1 116104049 116104082 -81091350 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1470 832 321 8 16 chr1 116104370 116104617 -81090815 - B4 SINE B4 -2 290 46 1 1470 237 65 0 0 chr1 116105334 116105365 -81090067 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1470 546 308 73 119 chr1 116105567 116105869 -81089563 - B4 SINE B4 -1 291 4 1 1470 397 281 76 90 chr1 116106448 116106671 -81088761 - MTD LTR MaLR -2 417 158 1 1470 216 97 0 0 chr1 116107055 116107086 -81088346 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 1 1470 423 351 6 32 chr1 116107087 116107243 -81088189 - RSINE1 SINE B4 0 165 14 1 1470 3287 42 3 0 chr1 116107956 116108340 -81087092 + IAPEY_LTR LTR ERVK 1 385 0 1 1470 1204 55 0 18 chr1 116108340 116108505 -81086927 + IAPEy-int LTR ERVK 1 162 -7351 1 1470 2643 135 27 16 chr1 116108502 116109013 -81086419 + IAPEy-int LTR ERVK 542 1058 -6455 1 1470 20532 46 9 4 chr1 116109013 116111709 -81083723 + IAPEy-int LTR ERVK 4804 7513 0 1 1470 3281 34 3 0 chr1 116111709 116112093 -81083339 + IAPEY_LTR LTR ERVK 1 385 0 1 1470 321 237 26 26 chr1 116112146 116112224 -81083208 + B4 SINE B4 3 80 -212 1 1470 417 39 0 0 chr1 116112287 116112338 -81083094 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1470 255 190 0 0 chr1 116114527 116114585 -81080847 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1470 207 360 0 17 chr1 116114610 116114785 -81080647 + (TG)n Simple_repeat Simple_repeat 1 172 0 1 1470 25 0 0 0 chr1 116114831 116114856 -81080576 + AT_rich Low_complexity Low_complexity 1 25 0 1 1470 1869 219 29 29 chr1 116114862 116115209 -81080223 + L1_Mur2 LINE L1 1203 1560 -4317 1 1470 1033 96 0 0 chr1 116115209 116115344 -81080088 + B1_Mus1 SINE Alu 1 135 -13 1 1470 280 0 24 24 chr1 116115344 116115385 -81080047 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 1 1470 1869 219 29 29 chr1 116115385 116115590 -81079842 + L1_Mur2 LINE L1 1561 1755 -4122 1 1470 1489 226 56 35 chr1 116116195 116116375 -81079057 + L1_Mur2 LINE L1 1753 1934 -3943 1 1470 4259 96 2 3 chr1 116116375 116116968 -81078464 - L1Md_F2 LINE L1 -12 6570 5979 1 1470 1489 226 56 35 chr1 116116968 116117251 -81078181 + L1_Mur2 LINE L1 1935 2226 -3651 1 1470 228 155 28 14 chr1 116117288 116117360 -81078072 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1470 721 192 7 7 chr1 116117374 116117526 -81077906 + L1_Mur2 LINE L1 2252 2403 -3474 1 1470 3216 181 54 3 chr1 116117526 116117669 -81077763 + L1_Mur2 LINE L1 4286 4447 -1430 1 1470 741 23 0 0 chr1 116117669 116117756 -81077676 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1 1470 3216 181 54 3 chr1 116117756 116118282 -81077150 + L1_Mur2 LINE L1 4448 4988 -889 1 1470 632 263 100 89 chr1 116118280 116118551 -81076881 + Lx5 LINE L1 6719 6992 -58 1 1470 22 35 0 0 chr1 116118566 116118595 -81076837 + AT_rich Low_complexity Low_complexity 1 29 0 1 1470 321 327 0 88 chr1 116118601 116118715 -81076717 - B4 SINE B4 -81 211 108 1 1470 479 275 70 64 chr1 116118718 116118889 -81076543 - ORR1D1 LTR MaLR -40 334 163 1 1470 860 114 7 0 chr1 116118935 116119075 -81076357 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 1 1470 673 288 15 20 chr1 116119085 116119280 -81076152 - ORR1D1 LTR MaLR -180 194 1 1 1470 305 341 0 0 chr1 116119811 116119899 -81075533 - RMER30 DNA MER1_type -20 182 95 1 1470 233 284 82 9 chr1 116119820 116119903 -81075529 + Charlie12 DNA MER1_type 29 114 -2759 1 1470 1604 26 11 0 chr1 116119903 116120093 -81075339 - B2_Mm1a SINE B2 0 193 2 1 1470 233 284 82 9 chr1 116120093 116120119 -81075313 + Charlie12 DNA MER1_type 115 146 -2727 1 1470 356 350 126 5 chr1 116120150 116120357 -81075075 - Lx8 LINE L1 -714 6759 6528 1 1470 210 71 0 0 chr1 116120357 116120385 -81075047 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1470 37931 30 0 1 chr1 116120458 116126921 -81068511 - L1Md_T LINE L1 -12 6573 22 1 1470 408 40 0 0 chr1 116127011 116127061 -81068371 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 1470 207 69 0 0 chr1 116127068 116127097 -81068335 + (TAG)n Simple_repeat Simple_repeat 1 29 0 1 1470 3738 103 9 6 chr1 116127227 116127753 -81067679 - L1_Mus2 LINE L1 -2 6564 6037 1 1470 242 291 0 0 chr1 116127778 116127833 -81067599 - RMER30 DNA MER1_type -137 65 11 1 1470 357 24 0 0 chr1 116127939 116127981 -81067451 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1470 21 0 0 0 chr1 116128043 116128064 -81067368 + AT_rich Low_complexity Low_complexity 1 21 0 1 1470 1755 178 19 0 chr1 116128134 116128455 -81066977 - ORR1A2 LTR MaLR 0 327 1 1 1470 924 319 69 47 chr1 116128577 116129025 -81066407 - Lx8 LINE L1 -174 7299 6842 1 1471 630 348 93 34 chr1 116130129 116130397 -81065035 + B4A SINE B4 9 292 0 1 1471 1095 89 0 14 chr1 116130603 116130751 -81064681 - B1_Mus2 SINE Alu -1 146 1 1 1471 393 369 57 6 chr1 116131011 116131188 -81064244 - MER74A LTR ERVL -4 554 369 1 1471 27 29 0 0 chr1 116131360 116131394 -81064038 + AT_rich Low_complexity Low_complexity 1 34 0 1 1471 341 342 107 25 chr1 116131963 116132206 -81063226 - B4A SINE B4 -6 286 24 1 1471 22 70 0 0 chr1 116132208 116132251 -81063181 + AT_rich Low_complexity Low_complexity 1 43 0 1 1471 23 0 0 0 chr1 116132776 116132799 -81062633 + AT_rich Low_complexity Low_complexity 1 23 0 1 1471 697 364 35 32 chr1 116133262 116133546 -81061886 - B4 SINE B4 -2 290 6 1 1471 219 266 51 40 chr1 116133622 116133798 -81061634 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1471 570 172 121 0 chr1 116134441 116134540 -81060892 - Lx LINE L1 -179 6475 6365 1 1471 851 158 25 61 chr1 116134540 116134736 -81060696 + Lx LINE L1 6459 6647 -7 1 1471 562 337 33 40 chr1 116134811 116135020 -81060412 + B3A SINE B2 1 205 -11 1 1471 189 0 0 0 chr1 116135056 116135077 -81060355 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1471 446 292 9 9 chr1 116135133 116135240 -81060192 + RSINE1 SINE B4 16 122 -43 1 1471 277 233 33 0 chr1 116135610 116135670 -81059762 + B4 SINE B4 132 193 -99 1 1471 227 79 26 0 chr1 116135695 116135733 -81059699 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1471 951 99 6 32 chr1 116135834 116135991 -81059441 + L1Md_F2 LINE L1 6409 6561 -21 1 1471 552 15 0 0 chr1 116135997 116136062 -81059370 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1471 513 0 0 0 chr1 116136133 116136190 -81059242 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1471 309 51 0 0 chr1 116136190 116136228 -81059204 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1471 219 69 0 0 chr1 116136481 116136510 -81058922 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1 1471 464 89 13 0 chr1 116136775 116136854 -81058578 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1471 240 172 0 0 chr1 116136856 116136914 -81058518 + GA-rich Low_complexity Low_complexity 1 58 0 1 1471 259 217 0 0 chr1 116138092 116138152 -81057280 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1471 234 354 56 107 chr1 116138765 116138961 -81056471 + B4 SINE B4 107 292 0 1 1471 180 97 0 0 chr1 116139057 116139088 -81056344 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 1 1471 416 305 54 88 chr1 116139427 116139632 -81055800 + MLT2B1 LTR ERVL 33 230 -290 1 1471 486 0 0 0 chr1 116139668 116139722 -81055710 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1471 830 340 104 6 chr1 116139771 116140117 -81055315 + Lx8 LINE L1 6843 7222 -251 1 1471 9488 139 3 2 chr1 116140120 116141660 -81053772 - L1_Mm LINE L1 -686 5197 3656 1 1471 7018 82 2 3 chr1 116141660 116142601 -81052831 + L1_Mus2 LINE L1 5626 6565 -1 1 1471 6388 135 6 39 chr1 116142613 116143066 -81052366 + Lx LINE L1 5355 5794 -860 1 1471 1080 75 0 14 chr1 116143066 116143077 -81052355 - B1_Mus1 SINE Alu 0 148 138 1 1471 210 37 0 0 chr1 116143077 116143104 -81052328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1471 1080 75 0 14 chr1 116143104 116143240 -81052192 - B1_Mus1 SINE Alu -11 137 3 1 1471 6388 139 18 33 chr1 116143240 116144084 -81051348 + Lx LINE L1 5795 6638 -16 1 1471 230 274 0 0 chr1 116144138 116144200 -81051232 + RMER15 LTR ERVL 403 464 -111 1 1471 383 381 28 0 chr1 116144265 116144441 -81050991 + MLT2B1 LTR ERVL 377 557 -5 1 1471 946 85 0 0 chr1 116145627 116145756 -81049676 - B1_Mus1 SINE Alu -19 129 1 1 1471 466 372 79 18 chr1 116145992 116146271 -81049161 + MLT1A0 LTR MaLR 68 363 -2 1 1471 2006 196 110 18 chr1 116146404 116146860 -81048572 - RLTR16 LTR ERVK 0 505 8 1 1471 276 290 29 64 chr1 116147620 116147760 -81047672 + MLT2B2 LTR ERVL 433 567 0 1 1471 188 24 71 24 chr1 116148607 116148649 -81046783 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 1 1471 24 0 0 0 chr1 116148891 116148915 -81046517 + AT_rich Low_complexity Low_complexity 1 24 0 1 1471 345 312 41 28 chr1 116148952 116149097 -81046335 - B1F SINE Alu 0 149 3 1 1471 216 148 0 0 chr1 116149404 116149443 -81045989 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1471 399 113 0 0 chr1 116149443 116149514 -81045918 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1471 216 148 0 0 chr1 116149514 116149528 -81045904 + (CAAA)n Simple_repeat Simple_repeat 1 14 0 1 1471 216 326 90 0 chr1 116151223 116151312 -81044120 - B3A SINE B2 -14 184 88 1 1471 819 75 0 0 chr1 116151520 116151640 -81043792 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 2 1471 3253 263 97 12 chr1 116151653 116152735 -81042697 - Lx9 LINE L1 -70 7574 6401 2 1471 234 116 0 0 chr1 116152739 116152782 -81042650 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1471 414 0 0 0 chr1 116152816 116152862 -81042570 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1471 324 0 0 0 chr1 116152862 116152897 -81042535 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1471 387 0 0 0 chr1 116153996 116154039 -81041393 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1471 417 344 143 28 chr1 116154082 116154333 -81041099 - B4 SINE B4 -10 282 3 2 1471 23 33 0 0 chr1 116154923 116154953 -81040479 + AT_rich Low_complexity Low_complexity 1 30 0 2 1471 273 98 0 0 chr1 116154953 116154994 -81040438 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1471 960 294 57 0 chr1 116155850 116156149 -81039283 + Lx8 LINE L1 6780 7095 -378 2 1471 527 311 12 53 chr1 116156150 116156320 -81039112 - B3A SINE B2 -34 164 2 2 1471 25 31 0 0 chr1 116156826 116156858 -81038574 + AT_rich Low_complexity Low_complexity 1 32 0 2 1471 259 107 0 0 chr1 116158027 116158083 -81037349 - L1_Mus4 LINE L1 -3 6633 6578 2 1471 494 339 33 17 chr1 116158111 116158291 -81037141 + ID_B1 SINE B4 41 223 -1 2 1471 299 368 46 28 chr1 116158587 116158805 -81036627 + MLT1A0 LTR MaLR 144 365 0 2 1471 30 45 0 0 chr1 116158947 116158991 -81036441 + AT_rich Low_complexity Low_complexity 1 44 0 2 1471 566 278 29 54 chr1 116159014 116159219 -81036213 - B3A SINE B2 -15 201 2 2 1471 1045 153 9 60 chr1 116159330 116159546 -81035886 - L1_Mur1 LINE L1 -1613 4273 4069 2 1471 2610 86 91 3 chr1 116159546 116159921 -81035511 + L1_Mus1 LINE L1 6160 6567 0 2 1471 211 200 0 0 chr1 116159921 116159956 -81035476 + polypurine Low_complexity Low_complexity 6 40 0 2 1471 3764 150 10 48 chr1 116159957 116160322 -81035110 + L1_Mus4 LINE L1 5957 6301 -335 2 1471 5466 112 124 19 chr1 116160322 116161212 -81034220 + RLTR13C1 LTR ERVK 1 983 0 2 1471 3764 150 10 48 chr1 116161212 116161552 -81033880 + L1_Mus4 LINE L1 6302 6635 -1 2 1471 231 191 0 0 chr1 116161564 116161627 -81033805 + A-rich Low_complexity Low_complexity 1 63 0 2 1471 766 321 90 47 chr1 116161802 116162357 -81033075 + RMER15-int LTR ERVL 4217 4795 -204 2 1471 3140 248 77 40 chr1 116162491 116163453 -81031979 + RLTR25A LTR ERVK 31 1028 0 2 1471 308 344 51 25 chr1 116163672 116163830 -81031602 + RMER15 LTR ERVL 310 471 -104 2 1471 311 248 48 4 chr1 116164051 116164150 -81031282 + MTEb LTR MaLR 278 379 0 2 1471 499 345 43 11 chr1 116165438 116165719 -81029713 + B4A SINE B4 3 292 0 2 1471 985 118 12 17 chr1 116166085 116166258 -81029174 + (TTCTC)n Simple_repeat Simple_repeat 2 173 0 2 1471 188 261 42 28 chr1 116166554 116166625 -81028807 - L3 LINE CR1 -2286 2203 2132 2 1471 1859 271 22 40 chr1 116166704 116167024 -81028408 + RMER19C LTR ERVK 109 409 -202 2 1471 180 0 0 0 chr1 116167024 116167044 -81028388 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1471 1859 271 22 40 chr1 116167044 116167223 -81028209 + RMER19C LTR ERVK 410 598 -13 2 1471 304 179 14 43 chr1 116167239 116167309 -81028123 + MurERV4_19-int LTR ERVK 1 68 -5712 2 1471 37570 44 5 1 chr1 116167311 116173394 -81022038 - L1Md_T LINE L1 0 6585 383 2 1471 1280 209 35 0 chr1 116173400 116173658 -81021774 + MurERV4_19-int LTR ERVK 63 329 -5451 2 1471 11131 201 45 4 chr1 116173687 116176012 -81019420 + MurERV4_19-int LTR ERVK 1061 3480 -2300 2 1471 23 68 0 0 chr1 116176954 116176998 -81018434 + AT_rich Low_complexity Low_complexity 1 44 0 2 1471 5533 60 15 14 chr1 116177265 116177910 -81017522 - L1_Mm LINE L1 -2 5881 5246 2 1471 243 0 0 0 chr1 116177910 116177937 -81017495 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1471 5533 60 15 14 chr1 116177937 116178020 -81017412 - L1_Mm LINE L1 -638 5245 5153 2 1471 4942 88 20 3 chr1 116178020 116178713 -81016719 + L1Md_F2 LINE L1 5878 6582 0 2 1471 216 97 0 0 chr1 116178840 116178871 -81016561 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1471 1849 254 21 57 chr1 116179167 116179692 -81015740 + RMER20A LTR ERVK 11 516 0 2 1471 484 299 41 0 chr1 116179706 116179857 -81015575 - B3A SINE B2 -59 157 1 2 1471 230 329 72 12 chr1 116180081 116180164 -81015268 + PB1D10 SINE Alu 12 99 -18 2 1471 587 300 84 80 chr1 116180737 116180755 -81014677 - MTEa LTR MaLR -19 360 340 2 1471 1930 81 44 0 chr1 116180755 116181028 -81014404 + L1_Mus1 LINE L1 6283 6567 0 2 1471 587 300 84 80 chr1 116181028 116181259 -81014173 - MTEa LTR MaLR -40 339 110 2 1471 2992 234 14 28 chr1 116181832 116182483 -81012949 - RLTR26 LTR ERVK 0 642 1 2 1471 290 338 55 21 chr1 116183045 116183190 -81012242 - MTD LTR MaLR -5 414 265 2 1471 281 234 257 18 chr1 116183265 116183333 -81012099 - RLTR20D LTR ERVK -27 541 458 2 1471 468 35 0 0 chr1 116183333 116183391 -81012041 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1471 281 234 257 18 chr1 116183391 116183431 -81012001 - RLTR20D LTR ERVK -111 457 408 2 1471 2276 193 4 70 chr1 116183519 116184003 -81011429 - RLTR26 LTR ERVK 0 642 191 2 1471 542 264 93 0 chr1 116184112 116184241 -81011191 + RSINE1 SINE B4 4 144 -21 2 1471 387 0 0 0 chr1 116184245 116184288 -81011144 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1471 493 285 92 0 chr1 116184324 116184454 -81010978 - RSINE1 SINE B4 -19 146 5 2 1471 325 259 246 18 chr1 116184534 116184705 -81010727 + B4A SINE B4 12 221 -71 2 1471 1581 266 42 44 chr1 116184960 116185487 -81009945 - RMER13B LTR ERVK -111 797 272 2 1471 1489 202 40 67 chr1 116185506 116185957 -81009475 - RMER17B LTR ERVK -519 439 1 2 1471 605 228 37 31 chr1 116185961 116186124 -81009308 - RLTR20D LTR ERVK -392 176 13 2 1471 760 205 111 0 chr1 116186131 116186365 -81009067 - MYSERV16_I-int LTR ERVK -18 2308 2049 2 1471 291 90 53 33 chr1 116186365 116186443 -81008989 - L1_Mm LINE L1 -387 5496 5410 2 1471 997 142 0 0 chr1 116186472 116186620 -81008812 + B1_Mus1 SINE Alu 1 148 0 2 1471 614 253 19 62 chr1 116186678 116186935 -81008497 - MYSERV16_I-int LTR ERVK -1464 1378 1133 2 1471 1148 200 31 0 chr1 116187223 116187448 -81007984 - Lx2 LINE L1 -1 6996 6765 2 1471 1347 180 0 0 chr1 116187434 116187651 -81007781 - Lx2 LINE L1 -349 6648 6432 2 1471 2705 189 14 29 chr1 116187650 116188233 -81007199 + L1_Mur2 LINE L1 4595 5168 -709 2 1471 1492 144 85 0 chr1 116188560 116188831 -81006601 - Lx2 LINE L1 -1 6996 6703 2 1471 408 292 98 42 chr1 116188924 116189010 -81006422 - RLTR20D LTR ERVK -11 557 474 2 1471 219 36 0 0 chr1 116189010 116189038 -81006394 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1471 408 292 98 42 chr1 116189038 116189094 -81006338 - RLTR20D LTR ERVK -95 473 407 2 1471 726 271 122 46 chr1 116189083 116189346 -81006086 - RLTR20D LTR ERVK -285 283 1 2 1471 2924 96 7 7 chr1 116189465 116189886 -81005546 + BGLII LTR ERVK 1 421 0 2 1471 534 295 144 44 chr1 116190014 116190354 -81005078 - MTEa LTR MaLR -3 376 3 2 1471 471 48 0 0 chr1 116190885 116190947 -81004485 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1471 180 97 0 0 chr1 116191274 116191305 -81004127 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 2 1471 651 317 74 30 chr1 116191331 116191601 -81003831 - B4 SINE B4 0 292 11 2 1471 1068 284 23 58 chr1 116191590 116191900 -81003532 + MTD LTR MaLR 36 334 -85 2 1471 489 34 0 0 chr1 116191905 116191964 -81003468 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1471 2158 114 34 16 chr1 116192149 116192470 -81002962 + ORR1A2 LTR MaLR 1 327 0 2 1471 232 65 0 0 chr1 116192478 116192509 -81002923 + Kanga1c DNA Tc2 401 431 -298 2 1471 396 130 0 0 chr1 116192558 116192627 -81002805 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1471 222 300 9 26 chr1 116192667 116192780 -81002652 + (TATG)n Simple_repeat Simple_repeat 4 114 0 2 1471 311 115 33 0 chr1 116192830 116192891 -81002541 + (TATG)n Simple_repeat Simple_repeat 4 66 0 2 1471 511 86 258 0 chr1 116192954 116193047 -81002385 - B1_Mus2 SINE Alu 0 147 31 2 1471 516 362 13 0 chr1 116193043 116193192 -81002240 - B4A SINE B4 -109 183 33 2 1471 276 262 112 0 chr1 116193275 116193355 -81002077 - B4A SINE B4 -187 105 17 2 1471 385 394 50 25 chr1 116193694 116193853 -81001579 - RSINE1 SINE B4 0 165 3 2 1471 598 305 20 0 chr1 116194308 116194459 -81000973 + RSINE1 SINE B4 12 165 0 2 1471 440 314 131 65 chr1 116194556 116194801 -81000631 + B4A SINE B4 24 284 -8 2 1471 289 323 0 20 chr1 116195136 116195237 -81000195 + GA-rich Low_complexity Low_complexity 2 100 0 2 1471 565 219 30 8 chr1 116195483 116195672 -80999760 - L1_Mur3 LINE L1 -459 5421 5214 2 1471 189 94 0 0 chr1 116195677 116195709 -80999723 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 2 1471 1034 97 14 0 chr1 116195713 116195857 -80999575 - B1_Mm SINE Alu 0 147 2 2 1471 762 224 33 19 chr1 116195862 116196076 -80999356 - L1_Mur3 LINE L1 -587 5293 5077 2 1471 279 0 0 0 chr1 116196078 116196109 -80999323 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1471 412 305 103 50 chr1 116196136 116196436 -80998996 - L1_Mur3 LINE L1 -7029 699 384 2 1471 230 304 0 0 chr1 116196694 116196763 -80998669 + L1_Rod LINE L1 4860 4928 -919 2 1471 254 267 12 0 chr1 116196899 116196985 -80998447 + L1M2 LINE L1 5178 5264 -879 2 1471 511 203 0 17 chr1 116197158 116197278 -80998154 - L1_Mus3 LINE L1 -42 6596 6479 2 1471 503 147 0 52 chr1 116197279 116197394 -80998038 - Lx LINE L1 -29 6625 6517 2 1471 2016 187 9 5 chr1 116197395 116197814 -80997618 - L1_Mur2 LINE L1 -573 5304 4884 2 1471 558 154 0 35 chr1 116197814 116197928 -80997504 + Lx LINE L1 6538 6647 -7 2 1471 3017 80 39 16 chr1 116197961 116198396 -80997036 + L1_Mus2 LINE L1 6122 6566 0 2 1471 7863 50 4 1 chr1 116198598 116199631 -80995801 - L1Md_F3 LINE L1 -14 6570 5535 2 1471 508 310 54 0 chr1 116199937 116200121 -80995311 + B3A SINE B2 5 198 0 2 1471 392 274 64 36 chr1 116200247 116200387 -80995045 + B1F1 SINE Alu 6 149 0 2 1471 577 272 94 51 chr1 116200736 116200992 -80994440 - RMER15 LTR ERVL 0 575 309 2 1471 21 0 0 0 chr1 116201314 116201335 -80994097 + AT_rich Low_complexity Low_complexity 1 21 0 2 1471 276 343 84 56 chr1 116201607 116201749 -80993683 - B3A SINE B2 -16 182 37 2 1471 295 219 10 10 chr1 116201770 116201867 -80993565 + CT-rich Low_complexity Low_complexity 1 97 0 2 1471 802 317 119 8 chr1 116201963 116202316 -80993116 - MTD LTR MaLR -26 393 2 2 1471 259 347 0 14 chr1 116202327 116202400 -80993032 + RSINE1 SINE B4 10 81 -84 2 1471 477 0 0 0 chr1 116202676 116202729 -80992703 + (GGA)n Simple_repeat Simple_repeat 3 55 0 2 1471 2013 81 84 39 chr1 116202831 116203164 -80992268 - RLTR10B2 LTR ERVK 0 365 18 3 1471 298 75 0 0 chr1 116203222 116203262 -80992170 - RLTR10B2 LTR ERVK -252 40 1 3 1471 1113 302 86 42 chr1 116203604 116204171 -80991261 + RLTR18 LTR ERVK 1 592 -24 3 1471 244 422 0 0 chr1 116204524 116204614 -80990818 + B4A SINE B4 24 113 -179 3 1471 249 395 124 51 chr1 116204946 116205725 -80989707 - L2 LINE L2 -355 3064 2229 3 1471 314 23 23 0 chr1 116206171 116206214 -80989218 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1471 3357 65 0 0 chr1 116206665 116207095 -80988337 + L1Md_F2 LINE L1 6141 6570 -12 3 1471 527 355 70 7 chr1 116207671 116207941 -80987491 + B4 SINE B4 1 287 -5 3 1471 558 203 0 0 chr1 116208009 116208127 -80987305 + GA-rich Low_complexity Low_complexity 3 120 0 3 1471 2165 117 31 0 chr1 116208800 116209117 -80986315 - ORR1A2 LTR MaLR 0 327 1 3 1471 240 35 0 0 chr1 116209233 116209262 -80986170 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1471 409 300 23 8 chr1 116209551 116209682 -80985750 - MTD LTR MaLR -14 405 273 3 1471 333 0 0 0 chr1 116209826 116209863 -80985569 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1471 2766 85 28 3 chr1 116210464 116210852 -80984580 + MTB LTR MaLR 3 400 0 3 1471 1455 220 17 10 chr1 116211931 116212220 -80983212 - MTC LTR MaLR -23 398 108 3 1471 825 56 0 0 chr1 116212220 116212327 -80983105 + B1_Mus1 SINE Alu 30 136 -12 3 1471 911 106 7 0 chr1 116212327 116212469 -80982963 + (GAAAA)n Simple_repeat Simple_repeat 3 145 0 3 1471 260 229 115 0 chr1 116212469 116212530 -80982902 - MTC LTR MaLR -308 113 46 3 1471 1705 266 78 49 chr1 116212555 116213167 -80982265 - MTC-int LTR MaLR 0 1258 629 3 1471 348 138 0 0 chr1 116214156 116214221 -80981211 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1471 990 41 0 0 chr1 116215466 116215587 -80979845 - L1_Mm LINE L1 -732 5151 5031 3 1471 6608 50 17 4 chr1 116215588 116216426 -80979006 + L1Md_F2 LINE L1 5722 6570 -12 3 1471 256 287 134 85 chr1 116217582 116217746 -80977686 - B3A SINE B2 -23 172 1 3 1471 1355 288 21 13 chr1 116217781 116218175 -80977257 - MTD LTR MaLR -21 398 12 3 1471 414 318 30 23 chr1 116220158 116220290 -80975142 + B4A SINE B4 4 136 -156 3 1471 614 266 38 38 chr1 116220698 116220858 -80974574 + B4A SINE B4 131 290 -2 3 1471 335 145 0 14 chr1 116220870 116220940 -80974492 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1471 781 269 122 93 chr1 116220944 116221095 -80974337 - ORR1E LTR MaLR -2 357 220 3 1471 3823 45 2 0 chr1 116221095 116221564 -80973868 + L1Md_F2 LINE L1 6113 6582 0 3 1471 781 269 122 93 chr1 116221564 116221756 -80973676 - ORR1E LTR MaLR -140 219 4 3 1471 371 20 20 0 chr1 116221858 116221902 -80973530 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1471 435 38 0 0 chr1 116221902 116221955 -80973477 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1471 939 299 73 37 chr1 116222482 116222836 -80972596 - MTE2b LTR MaLR -7 372 6 3 1471 407 18 0 35 chr1 116222882 116222939 -80972493 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 3 1471 512 301 68 14 chr1 116223068 116223353 -80972079 + MTD LTR MaLR 89 406 -13 3 1471 436 328 16 32 chr1 116223779 116223905 -80971527 + RMER20B LTR ERVK 1 124 -503 3 1471 267 319 90 21 chr1 116223983 116224127 -80971305 + RMER20B LTR ERVK 363 516 0 3 1471 380 301 71 135 chr1 116224134 116224445 -80970987 - B4A SINE B4 0 292 2 3 1471 264 130 0 0 chr1 116224628 116224674 -80970758 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 1471 438 320 20 0 chr1 116224710 116224863 -80970569 - RSINE1 SINE B4 -6 159 4 3 1471 514 102 34 8 chr1 116225729 116225848 -80969584 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 3 1471 458 338 66 27 chr1 116226666 116227031 -80968401 - MTE2b LTR MaLR 0 379 1 3 1471 596 67 11 0 chr1 116227664 116227754 -80967678 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 3 1471 1475 196 84 21 chr1 116227775 116228108 -80967324 - ORR1B1 LTR MaLR 0 394 41 3 1471 242 212 35 12 chr1 116228117 116228203 -80967229 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 3 1471 534 291 31 107 chr1 116228343 116228670 -80966762 + RLTR17 LTR ERVK 125 426 -266 3 1471 5008 52 21 6 chr1 116228958 116229610 -80965822 - L1Md_F3 LINE L1 -14 6570 5909 3 1471 286 298 137 24 chr1 116229927 116230051 -80965381 + RMER15 LTR ERVL 424 561 -14 3 1471 1346 258 3 0 chr1 116231079 116231405 -80964027 + ORR1A2 LTR MaLR 1 327 0 3 1471 6545 230 28 23 chr1 116231405 116233188 -80962244 + ORR1A2-int LTR MaLR 1 1792 0 3 1471 1633 160 70 0 chr1 116233198 116233485 -80961947 + ORR1A2 LTR MaLR 13 319 -8 3 1471 359 21 21 0 chr1 116233513 116233561 -80961871 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1471 22 56 0 0 chr1 116233583 116233619 -80961813 + AT_rich Low_complexity Low_complexity 1 36 0 3 1471 375 386 14 24 chr1 116233705 116233912 -80961520 + B4A SINE B4 2 206 -86 3 1471 393 22 0 0 chr1 116233979 116234025 -80961407 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1471 23 33 0 0 chr1 116234035 116234065 -80961367 + AT_rich Low_complexity Low_complexity 1 30 0 3 1471 3843 176 68 61 chr1 116234421 116234455 -80960977 - L1_Mus2 LINE L1 -1 6565 6534 3 1471 1656 61 5 0 chr1 116234455 116234669 -80960763 - L1Md_F2 LINE L1 -12 6570 6356 3 1471 6834 118 31 26 chr1 116234669 116236216 -80959216 - L1_Mus2 LINE L1 -33 6533 4976 3 1471 4373 90 11 37 chr1 116236216 116236872 -80958560 + L1Md_F2 LINE L1 5941 6579 -3 3 1471 25313 150 15 11 chr1 116236895 116243010 -80952422 + L1_Mus3 LINE L1 501 6631 -7 3 1471 843 10 0 0 chr1 116244224 116244320 -80951112 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1471 243 0 0 0 chr1 116244320 116244346 -80951086 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1471 582 217 36 14 chr1 116244835 116244975 -80950457 - Lx7 LINE L1 -2 7694 7552 3 1471 294 29 0 0 chr1 116244980 116245015 -80950417 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1471 1359 222 14 5 chr1 116245266 116245798 -80949634 + Lx4B LINE L1 923 1457 -4420 3 1471 4710 199 52 17 chr1 116245813 116246950 -80948482 + Lx4B LINE L1 1917 3093 -2784 3 1471 8021 197 40 21 chr1 116246958 116249662 -80945770 + Lx4B LINE L1 4079 6845 -213 3 1471 226 115 19 19 chr1 116250142 116250195 -80945237 + A-rich Low_complexity Low_complexity 3 55 0 3 1471 496 323 14 9 chr1 116250213 116250435 -80944997 + ID_B1 SINE B4 2 224 0 3 1471 371 302 146 54 chr1 116250861 116251150 -80944282 + ORR1E LTR MaLR 5 313 -46 3 1471 31 26 0 0 chr1 116251248 116251286 -80944146 + AT_rich Low_complexity Low_complexity 1 38 0 3 1471 213 357 112 0 chr1 116251348 116251446 -80943986 - B3A SINE B2 -86 112 4 3 1471 23 0 0 0 chr1 116253474 116253497 -80941935 + AT_rich Low_complexity Low_complexity 1 23 0 3 1471 540 95 0 0 chr1 116253611 116253695 -80941737 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1471 210 150 0 0 chr1 116253855 116253895 -80941537 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1471 437 68 0 0 chr1 116253895 116253954 -80941478 - B1_Mus2 SINE Alu 0 147 89 3 1471 609 292 47 6 chr1 116253947 116254119 -80941313 + MTE2b LTR MaLR 201 379 0 3 1471 215 289 99 11 chr1 116254287 116254378 -80941054 - MIRb SINE MIR -81 187 89 3 1471 295 385 61 43 chr1 116254864 116255095 -80940337 + B4A SINE B4 5 239 -53 3 1471 22 0 0 0 chr1 116255180 116255202 -80940230 + AT_rich Low_complexity Low_complexity 1 22 0 3 1471 713 203 7 14 chr1 116255215 116255360 -80940072 + B1_Mus1 SINE Alu 4 147 -1 3 1471 191 32 0 61 chr1 116255631 116255664 -80939768 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1471 1101 256 75 11 chr1 116255671 116256019 -80939413 + ORR1D2 LTR MaLR 1 370 0 3 1471 1237 41 0 0 chr1 116256288 116256434 -80938998 + B1_Mus2 SINE Alu 2 147 0 3 1471 388 312 188 0 chr1 116256504 116256690 -80938742 + ID_B1 SINE B4 3 223 -1 3 1471 2254 255 152 33 chr1 116256811 116257562 -80937870 + RMER13A LTR ERVK 16 855 -5 3 1471 453 110 0 0 chr1 116257562 116257644 -80937788 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1471 495 0 0 0 chr1 116257644 116257698 -80937734 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1471 219 393 81 16 chr1 116258189 116258313 -80937119 + B4 SINE B4 43 174 -118 3 1471 3606 49 2 2 chr1 116258606 116259055 -80936377 + L1Md_F2 LINE L1 6134 6582 0 3 1471 285 245 3 15 chr1 116259888 116259963 -80935469 - B4A SINE B4 -214 78 3 3 1471 469 329 46 23 chr1 116260034 116260252 -80935180 - MLT1L LTR MaLR -198 412 190 3 1472 827 288 174 13 chr1 116260927 116261244 -80934188 + MTD LTR MaLR 21 388 -31 3 1472 260 333 24 73 chr1 116261305 116261428 -80934004 - Tigger7 DNA MER2_type -2360 131 15 3 1472 822 317 66 24 chr1 116262013 116262301 -80933131 - MTE2b LTR MaLR -42 337 38 3 1472 429 20 0 0 chr1 116262480 116262530 -80932902 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1472 296 330 21 0 chr1 116262672 116262766 -80932666 + B4A SINE B4 2 97 -195 3 1472 279 79 0 0 chr1 116262895 116262933 -80932499 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1472 2169 199 92 15 chr1 116262933 116263453 -80931979 + RLTR31_Mm LTR ERVK 2 561 0 3 1472 905 279 64 73 chr1 116263469 116263532 -80931900 + RMER3D-int LTR ERVK 20 67 -2775 3 1472 207 0 0 0 chr1 116263532 116263555 -80931877 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1472 905 282 62 69 chr1 116263555 116264014 -80931418 + RMER3D-int LTR ERVK 68 851 -1991 3 1472 536 160 49 25 chr1 116264143 116264265 -80931167 + RMER3D-int LTR ERVK 486 610 -2232 3 1472 2146 199 27 28 chr1 116264263 116264825 -80930607 + RMER3D-int LTR ERVK 461 1543 -1299 3 1472 1285 187 11 37 chr1 116264850 116265122 -80930310 + RMER3D-int LTR ERVK 1538 1802 -1040 3 1472 3173 153 16 14 chr1 116265132 116265684 -80929748 + RLTR1D LTR ERV1 37 589 -16 3 1472 3329 212 72 44 chr1 116265705 116266713 -80928719 + RMER3D-int LTR ERVK 1805 2841 -1 3 1472 2012 153 27 16 chr1 116266714 116267085 -80928347 + RLTR31_Mm LTR ERVK 1 375 -186 3 1472 2328 211 34 84 chr1 116267396 116268039 -80927393 - RMER19C LTR ERVK 0 611 1 3 1472 439 271 127 14 chr1 116268039 116268181 -80927251 + Lx8 LINE L1 6212 6369 -1104 3 1472 1039 103 7 0 chr1 116268249 116268395 -80927037 + B1_Mm SINE Alu 1 147 0 3 1472 393 39 0 0 chr1 116268395 116268446 -80926986 + (CAAAA)n Simple_repeat Simple_repeat 4 54 0 3 1472 792 244 60 25 chr1 116268451 116268733 -80926699 + Lx5 LINE L1 6033 6324 -726 3 1472 8008 52 3 0 chr1 116268738 116269803 -80925629 - L1Md_F2 LINE L1 0 6582 5515 3 1472 5307 61 0 0 chr1 116269797 116270466 -80924966 + L1Md_F2 LINE L1 4848 5516 -367 3 1472 1946 141 13 3 chr1 116270543 116270849 -80924583 - RLTR27 LTR ERVK 0 309 1 4 1472 24 0 0 0 chr1 116271312 116271336 -80924096 + AT_rich Low_complexity Low_complexity 1 24 0 4 1472 432 375 13 38 chr1 116271759 116271995 -80923437 - MT2A LTR ERVL -147 386 157 4 1472 757 271 106 30 chr1 116272105 116272133 -80923299 + MTEb LTR MaLR 124 151 -228 4 1472 2832 68 32 34 chr1 116272133 116272545 -80922887 + RLTR10A LTR ERVK 1 411 0 4 1472 757 271 106 30 chr1 116272545 116272752 -80922680 + MTEb LTR MaLR 152 377 -2 4 1472 1015 68 0 2 chr1 116272852 116273002 -80922430 - B1_Mm SINE Alu -1 147 1 4 1472 1079 276 43 11 chr1 116273058 116273410 -80922022 + ORR1B2 LTR MaLR 2 364 -3 4 1472 846 208 64 21 chr1 116273434 116273621 -80921811 + RMER12 LTR ERVK 1 195 -1127 4 1472 1866 168 32 147 chr1 116273622 116274097 -80921335 - RLTR23 LTR ERV1 0 430 11 4 1472 598 283 84 89 chr1 116274112 116274504 -80920928 + RLTR22_Mur LTR ERVK 192 581 -1267 4 1472 22 88 0 0 chr1 116274556 116274613 -80920819 + AT_rich Low_complexity Low_complexity 1 57 0 4 1472 714 195 12 89 chr1 116274672 116274841 -80920591 + RLTR25B LTR ERVK 1 156 -872 4 1472 29004 37 0 7 chr1 116274841 116280825 -80914607 - L1Md_T LINE L1 -10 6572 631 4 1472 270 246 0 80 chr1 116280857 116280932 -80914500 + RLTR25B LTR ERVK 144 212 -816 4 1472 1286 84 0 0 chr1 116280932 116281099 -80914333 - L1Md_F2 LINE L1 -156 5727 5561 4 1472 6565 70 2 9 chr1 116281099 116281983 -80913449 + L1Md_F2 LINE L1 5705 6582 0 4 1472 201 175 0 0 chr1 116282152 116282192 -80913240 + CT-rich Low_complexity Low_complexity 2 41 0 4 1472 5617 165 32 4 chr1 116282193 116283431 -80912001 - Lx LINE L1 -6 6648 5358 4 1472 1376 89 0 0 chr1 116283431 116283622 -80911810 - L1_Mus2 LINE L1 0 6566 6376 4 1472 1504 63 5 76 chr1 116283622 116283845 -80911587 + L1_Mus2 LINE L1 6177 6383 -183 4 1472 387 162 0 0 chr1 116283838 116283906 -80911526 - L1_Mur3 LINE L1 -512 5368 5301 4 1472 610 226 148 107 chr1 116283913 116284156 -80911276 + RMER12 LTR ERVK 994 1246 -76 4 1472 291 141 0 0 chr1 116284612 116284676 -80910756 + (T)n Simple_repeat Simple_repeat 1 64 0 4 1472 548 358 49 0 chr1 116284678 116284882 -80910550 - B4A SINE B4 -68 224 11 4 1472 1141 259 98 101 chr1 116285240 116285862 -80909570 - RCHARR1 DNA MER1_type -2 972 353 4 1472 2553 214 70 27 chr1 116285864 116286666 -80908766 - Lx2 LINE L1 -346 7298 5898 4 1472 543 31 0 0 chr1 116286740 116286805 -80908627 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1472 293 191 58 45 chr1 116286873 116287027 -80908405 + Lx9 LINE L1 7488 7643 -1 4 1472 497 68 14 0 chr1 116287133 116287207 -80908225 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1472 228 67 0 0 chr1 116287623 116287653 -80907779 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4 1472 518 353 29 11 chr1 116287696 116287977 -80907455 - B4A SINE B4 -6 286 1 4 1472 399 21 0 0 chr1 116288152 116288200 -80907232 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1472 3621 83 0 0 chr1 116289070 116289551 -80905881 - L1_Mus1 LINE L1 0 6567 6087 4 1472 736 95 9 0 chr1 116289551 116289656 -80905776 + L1_Mus1 LINE L1 5981 6086 -481 4 1472 32882 93 7 14 chr1 116289673 116295842 -80899590 - L1Md_F3 LINE L1 0 6584 466 4 1472 385 347 62 0 chr1 116295949 116296093 -80899339 - Lx2 LINE L1 -956 6688 6536 4 1472 288 162 37 12 chr1 116296130 116296211 -80899221 + (TATG)n Simple_repeat Simple_repeat 2 84 0 4 1472 24 0 0 0 chr1 116296215 116296239 -80899193 + AT_rich Low_complexity Low_complexity 1 24 0 4 1472 205 231 0 16 chr1 116296289 116296412 -80899020 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 1472 888 278 39 46 chr1 116296973 116297256 -80898176 - MTE2b LTR MaLR -10 369 89 4 1472 359 259 135 12 chr1 116297878 116298057 -80897375 - MER2 DNA MER2_type -31 314 115 4 1472 443 269 57 43 chr1 116298187 116298327 -80897105 - RSINE1 SINE B4 -17 148 7 4 1472 576 42 0 0 chr1 116298444 116298515 -80896917 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1472 3018 49 42 3 chr1 116298613 116298999 -80896433 - L1Md_F3 LINE L1 0 6584 6184 4 1472 543 78 0 0 chr1 116299697 116299774 -80895658 + (TC)n Simple_repeat Simple_repeat 1 77 0 4 1472 285 365 0 0 chr1 116299839 116299935 -80895497 - B4A SINE B4 -3 289 194 4 1472 12949 47 2 4 chr1 116300035 116302344 -80893088 - L1Md_F2 LINE L1 0 6582 4280 4 1472 11261 160 39 64 chr1 116303122 116304522 -80890910 + L1VL4 LINE L1 238 1664 -1895 4 1472 351 65 0 0 chr1 116304522 116304568 -80890864 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1472 1272 56 0 0 chr1 116304568 116304728 -80890704 - B2_Mm1a SINE B2 -33 160 1 4 1472 11261 133 38 97 chr1 116304728 116306270 -80889162 + L1VL4 LINE L1 1665 3204 -355 4 1472 1083 206 39 7 chr1 116306266 116306550 -80888882 - L1_Mur2 LINE L1 -977 4900 4608 4 1472 1981 260 166 7 chr1 116306558 116307351 -80888081 + Lx4B LINE L1 6046 7050 -8 4 1472 476 344 127 12 chr1 116307372 116307537 -80887895 - B3A SINE B2 -14 184 1 4 1472 891 317 15 15 chr1 116307784 116308053 -80887379 + B4 SINE B4 2 270 -22 4 1472 481 342 143 11 chr1 116308046 116308312 -80887120 + MLT1A0 LTR MaLR 65 365 0 4 1472 441 141 0 0 chr1 116308353 116308452 -80886980 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 4 1472 532 341 7 0 chr1 116308489 116308627 -80886805 - B4 SINE B4 -10 282 144 4 1472 895 140 0 11 chr1 116309303 116309482 -80885950 - L1_Mus1 LINE L1 -850 5033 4782 4 1472 6817 99 10 5 chr1 116309477 116310985 -80884447 + L1_Mus1 LINE L1 5058 6567 0 4 1472 378 0 0 0 chr1 116311055 116311097 -80884335 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1472 1226 298 70 27 chr1 116311225 116311736 -80883696 + MT2A LTR ERVL 1 533 0 4 1472 1380 286 47 10 chr1 116312084 116312486 -80882946 + MTD LTR MaLR 3 419 0 4 1472 460 367 69 5 chr1 116313085 116313274 -80882158 + ID_B1 SINE B4 2 202 -22 4 1472 276 54 78 108 chr1 116313558 116313724 -80881708 + (CTAAT)n Simple_repeat Simple_repeat 5 165 0 4 1472 354 18 0 52 chr1 116313979 116314037 -80881395 + (TTTTC)n Simple_repeat Simple_repeat 4 58 0 4 1472 2267 242 22 18 chr1 116314166 116314670 -80880762 - RLTR18B LTR ERVK -4 508 3 4 1472 1087 299 63 16 chr1 116314938 116315257 -80880175 - MTEa LTR MaLR -28 351 18 4 1472 979 300 76 25 chr1 116315514 116315870 -80879562 + MTD LTR MaLR 46 419 0 4 1472 378 0 0 0 chr1 116316270 116316312 -80879120 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1472 507 328 52 38 chr1 116316634 116316846 -80878586 + B3 SINE B2 1 215 -1 4 1472 1364 52 0 0 chr1 116316846 116317020 -80878412 + L1Md_A LINE L1 6409 6582 0 4 1472 917 335 57 12 chr1 116317024 116317356 -80878076 + MTE2b LTR MaLR 9 355 -24 4 1472 247 343 9 36 chr1 116317583 116317695 -80877737 - PB1 SINE Alu -14 113 5 4 1472 8964 7 0 2 chr1 116317711 116318944 -80876488 - L1Md_T LINE L1 0 6582 5389 4 1472 280 336 14 2 chr1 116319208 116319317 -80876115 + B4A SINE B4 14 123 -169 4 1472 324 83 0 0 chr1 116319455 116319503 -80875929 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1472 233 271 207 23 chr1 116319645 116319732 -80875700 - B4 SINE B4 -188 104 2 4 1472 235 312 52 10 chr1 116319732 116319808 -80875624 + RMER12 LTR ERVK 765 844 -478 4 1472 3121 106 2 39 chr1 116319808 116320297 -80875135 + MT2C_Mm LTR ERVL 1 471 -4 4 1472 496 265 97 19 chr1 116320406 116320560 -80874872 - Lx3C LINE L1 -63 6913 6748 4 1472 918 134 0 7 chr1 116320567 116320717 -80874715 - Lx4B LINE L1 -1224 5834 5686 4 1472 2404 188 90 0 chr1 116320722 116320823 -80874609 + L1_Mur1 LINE L1 5172 5272 -614 4 1472 249 33 0 0 chr1 116320823 116320853 -80874579 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1472 2404 188 90 0 chr1 116320853 116321231 -80874201 + L1_Mur1 LINE L1 5273 5692 -194 4 1472 839 334 72 24 chr1 116321472 116321833 -80873599 - MTE2b LTR MaLR 0 359 1 4 1472 286 268 50 40 chr1 116322163 116322264 -80873168 + MTE2b LTR MaLR 10 111 -308 4 1472 656 216 35 41 chr1 116322306 116322502 -80872930 - MTC LTR MaLR 0 421 207 4 1472 500 255 35 7 chr1 116322464 116322606 -80872826 + MTE2b LTR MaLR 234 379 0 4 1472 306 283 117 48 chr1 116323744 116323889 -80871543 - Lx8 LINE L1 -113 7360 7206 4 1472 806 125 0 29 chr1 116323934 116324074 -80871358 - RMER17D2 LTR ERVK 0 809 674 4 1472 733 299 56 30 chr1 116324057 116324288 -80871144 + MTE2b LTR MaLR 141 377 -2 4 1472 476 330 78 51 chr1 116324346 116324563 -80870869 - B4A SINE B4 0 292 70 4 1472 417 317 3 49 chr1 116324775 116325073 -80870359 + L1M4 LINE L1 3557 3843 -2300 4 1472 17668 89 10 18 chr1 116325077 116325552 -80869880 + L1_Mm LINE L1 3009 3480 -2403 4 1472 207 0 0 0 chr1 116325552 116325575 -80869857 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1472 17668 89 10 18 chr1 116325575 116327356 -80868076 + L1_Mm LINE L1 3481 5249 -634 4 1472 627 14 0 0 chr1 116327356 116327428 -80868004 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1472 17668 89 10 18 chr1 116327428 116327766 -80867666 + L1_Mm LINE L1 5250 5584 -299 4 1472 6906 103 1 3 chr1 116327766 116328751 -80866681 + L1Md_F2 LINE L1 5587 6569 -13 4 1472 1714 217 41 90 chr1 116328797 116329208 -80866224 - RMER13B LTR ERVK -511 397 7 4 1472 2614 47 2 194 chr1 116329254 116329734 -80865698 - RLTR10 LTR ERVK -2 388 1 4 1472 336 355 56 8 chr1 116330500 116330625 -80864807 + B3A SINE B2 1 131 -67 4 1472 293 62 45 15 chr1 116330628 116330694 -80864738 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 4 1472 228 143 0 0 chr1 116331634 116331676 -80863756 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 4 1472 697 336 29 39 chr1 116331841 116332120 -80863312 + B4 SINE B4 16 291 -1 4 1472 183 42 0 0 chr1 116332494 116332518 -80862914 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1472 225 228 0 17 chr1 116332597 116332655 -80862777 + MLT1A1 LTR MaLR 326 382 -26 4 1472 4813 218 37 53 chr1 116332662 116334060 -80861372 - Lx4B LINE L1 -1068 5990 4606 4 1472 1056 303 12 18 chr1 116334044 116334370 -80861062 + Lx4B LINE L1 6027 6350 -708 4 1472 3510 77 25 2 chr1 116334379 116334850 -80860582 + L1_Mm LINE L1 5131 5612 -271 4 1472 445 267 69 0 chr1 116335237 116335353 -80860079 - RMER5 LTR ERV1 -209 325 202 4 1472 769 327 115 21 chr1 116335377 116335708 -80859724 + ORR1C2 LTR MaLR 3 364 -6 5 1472 1939 272 48 44 chr1 116335716 116336351 -80859081 + ORR1C2-int LTR MaLR 13 647 -862 5 1472 668 144 92 39 chr1 116336351 116336481 -80858951 + B1_Mus1 SINE Alu 2 138 -10 5 1472 288 0 0 0 chr1 116336481 116336513 -80858919 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1472 684 0 0 0 chr1 116336513 116336589 -80858843 + (GGAAA)n Simple_repeat Simple_repeat 1 76 0 5 1472 535 315 91 35 chr1 116336671 116337066 -80858366 - RMER5 LTR ERV1 -70 464 48 5 1472 1769 193 15 73 chr1 116337288 116337696 -80857736 + ORR1C2 LTR MaLR 1 384 0 5 1472 245 245 0 54 chr1 116337735 116337791 -80857641 + LTR48 LTR ERV1 3 55 -732 5 1472 7070 98 9 14 chr1 116337834 116339368 -80856064 - L1_Mus2 LINE L1 -1 6565 5039 5 1472 414 0 0 0 chr1 116340473 116340519 -80854913 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1472 1348 237 187 13 chr1 116341611 116342065 -80853367 - MT2A LTR ERVL 0 533 1 5 1472 1341 228 62 48 chr1 116342147 116342520 -80852912 + ORR1C1 LTR MaLR 1 378 0 5 1472 252 319 77 71 chr1 116342951 116343133 -80852299 - MER34A1 LTR ERV1 -390 197 15 5 1472 393 393 14 14 chr1 116343417 116343551 -80851881 + RSINE1 SINE B4 5 139 -26 5 1472 450 119 0 0 chr1 116343551 116343635 -80851797 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 1472 393 393 14 14 chr1 116343635 116343647 -80851785 + RSINE1 SINE B4 140 151 -14 5 1472 258 340 63 48 chr1 116344081 116344288 -80851144 - MTE2b LTR MaLR -169 210 1 5 1472 661 278 96 75 chr1 116344832 116344989 -80850443 + B3A SINE B2 2 153 -42 5 1472 840 122 0 0 chr1 116344989 116345153 -80850279 + (GA)n Simple_repeat Simple_repeat 1 164 0 5 1472 408 278 96 75 chr1 116345153 116345182 -80850250 + B2_Mm2 SINE B2 154 191 -4 5 1472 186 271 21 0 chr1 116346500 116346548 -80848884 + L2c LINE L2 3281 3329 -58 5 1472 774 289 109 45 chr1 116346917 116347228 -80848204 + MTEa LTR MaLR 16 346 -33 5 1472 961 39 15 8 chr1 116347598 116347728 -80847704 + (TTTTC)n Simple_repeat Simple_repeat 5 135 0 5 1472 381 131 0 0 chr1 116347987 116348048 -80847384 + (A)n Simple_repeat Simple_repeat 1 61 0 5 1472 345 376 8 16 chr1 116348311 116348438 -80846994 - RSINE1 SINE B4 -38 127 2 5 1472 22 56 0 0 chr1 116348497 116348533 -80846899 + AT_rich Low_complexity Low_complexity 1 36 0 5 1472 528 339 42 21 chr1 116348862 116349100 -80846332 + B4 SINE B4 6 248 -44 5 1472 335 157 0 14 chr1 116349172 116349243 -80846189 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1472 261 0 0 0 chr1 116349243 116349272 -80846160 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1472 350 337 33 98 chr1 116349804 116349988 -80845444 - B4A SINE B4 0 292 121 5 1472 1580 234 143 18 chr1 116350966 116351406 -80844026 + RMER20A LTR ERVK 1 495 -21 5 1472 317 246 0 0 chr1 116352832 116352901 -80842531 + B3A SINE B2 48 116 -82 5 1472 626 271 90 56 chr1 116354379 116354613 -80840819 - MTEa LTR MaLR 0 379 138 5 1472 525 300 21 0 chr1 116355081 116355221 -80840211 - MTEa LTR MaLR -235 144 2 5 1472 188 330 18 45 chr1 116355240 116355351 -80840081 - L2 LINE L2 -944 2475 2368 5 1472 430 385 18 6 chr1 116356611 116356781 -80838651 + B3A SINE B2 5 176 -22 5 1472 893 288 94 17 chr1 116356784 116357107 -80838325 - MTD LTR MaLR -14 405 62 5 1472 2099 325 38 48 chr1 116357115 116357538 -80837894 - Lx9 LINE L1 -219 7425 7020 5 1472 942 308 60 14 chr1 116357538 116357890 -80837542 + ORR1D2 LTR MaLR 1 368 -2 5 1472 2099 325 38 48 chr1 116357890 116358460 -80836972 - Lx9 LINE L1 -625 7019 6442 5 1472 833 277 54 33 chr1 116358669 116359005 -80836427 - Lx9 LINE L1 -1649 5995 5653 5 1472 288 360 0 0 chr1 116359352 116359438 -80835994 - B3A SINE B2 -112 86 1 5 1472 1183 278 42 18 chr1 116359994 116360324 -80835108 + MTE2a LTR MaLR 42 379 0 5 1472 378 0 0 0 chr1 116360567 116360609 -80834823 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 1472 300 342 87 52 chr1 116361363 116361603 -80833829 - B4 SINE B4 -4 288 68 5 1472 282 21 42 21 chr1 116361604 116361652 -80833780 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1472 818 239 5 22 chr1 116361758 116361942 -80833490 + MTD LTR MaLR 75 255 -164 5 1472 3660 167 9 8 chr1 116361962 116362608 -80832824 + Lx LINE L1 6001 6647 -7 5 1472 3245 193 32 15 chr1 116363106 116363721 -80831711 + Lx4A LINE L1 6404 7029 -29 5 1472 36 23 0 0 chr1 116363721 116363764 -80831668 + AT_rich Low_complexity Low_complexity 1 43 0 5 1472 983 308 49 79 chr1 116364159 116364526 -80830906 - ORR1E LTR MaLR 0 359 4 5 1472 341 86 17 0 chr1 116364751 116364809 -80830623 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1472 558 330 11 39 chr1 116364812 116364992 -80830440 - MTE2b LTR MaLR -9 370 196 5 1472 227 294 14 0 chr1 116364996 116365082 -80830350 - MTE2b LTR MaLR -292 87 1 5 1472 30 45 0 0 chr1 116365184 116365228 -80830204 + AT_rich Low_complexity Low_complexity 1 44 0 5 1472 236 259 49 0 chr1 116365402 116365483 -80829949 + L1M2 LINE L1 5695 5779 -518 5 1472 5426 218 32 43 chr1 116365498 116366553 -80828879 - Lx4B LINE L1 -230 6828 5936 5 1472 324 70 0 0 chr1 116366553 116366596 -80828836 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1472 627 108 0 0 chr1 116366597 116366690 -80828742 + (TG)n Simple_repeat Simple_repeat 1 93 0 5 1472 5936 212 20 19 chr1 116366690 116368104 -80827328 - Lx4B LINE L1 -1123 5935 4503 5 1472 2117 209 11 0 chr1 116368113 116368567 -80826865 - MusHAL1 LINE L1 -2003 709 251 5 1472 453 298 31 9 chr1 116368775 116369009 -80826423 + L1MA4 LINE L1 5679 5917 -383 5 1472 341 333 51 32 chr1 116369516 116369674 -80825758 + MTD LTR MaLR 5 165 -214 5 1472 301 339 66 71 chr1 116369521 116369718 -80825714 + MT2A LTR ERVL 10 205 -328 5 1472 516 312 73 14 chr1 116369815 116370104 -80825328 + MT2A LTR ERVL 220 525 -8 5 1472 530 373 169 9 chr1 116370743 116371068 -80824364 + MTE2b LTR MaLR 3 379 0 5 1472 323 287 21 0 chr1 116371604 116371698 -80823734 - RLTR42-int LTR ERVK -3738 1784 1689 5 1472 697 150 0 9 chr1 116372248 116372362 -80823070 + ORR1A3 LTR MaLR 1 113 -213 5 1472 443 59 29 0 chr1 116372358 116372426 -80823006 - RLTR25A LTR ERVK -618 485 416 5 1472 416 50 0 0 chr1 116372435 116372495 -80822937 - L1_Mus1 LINE L1 0 6567 6508 5 1472 252 0 0 0 chr1 116372627 116372655 -80822777 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1472 413 371 0 0 chr1 116372658 116372801 -80822631 + B3A SINE B2 14 156 -42 5 1472 441 0 0 0 chr1 116372806 116372855 -80822577 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1472 4875 183 18 6 chr1 116372865 116373853 -80821579 - L1_Mur2 LINE L1 -1553 4324 3325 5 1472 517 273 25 0 chr1 116373854 116373975 -80821457 + MTD LTR MaLR 294 417 -2 5 1472 253 259 22 110 chr1 116374434 116374525 -80820907 + B3 SINE B2 98 180 -36 5 1472 546 67 0 0 chr1 116374526 116374601 -80820831 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1472 238 225 157 36 chr1 116374631 116374797 -80820635 - Lx9 LINE L1 -1 7643 7458 5 1472 223 382 36 18 chr1 116375034 116375202 -80820230 + B4 SINE B4 1 171 -121 5 1472 306 0 0 0 chr1 116375226 116375260 -80820172 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1472 418 347 1 75 chr1 116375402 116375640 -80819792 - B4 SINE B4 -50 242 22 5 1472 434 345 27 7 chr1 116375647 116375796 -80819636 - B3A SINE B2 -44 154 3 5 1472 342 0 0 0 chr1 116376465 116376503 -80818929 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1472 682 67 19 0 chr1 116376504 116376609 -80818823 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1472 487 355 56 75 chr1 116376921 116377280 -80818152 - MTD LTR MaLR -67 352 1 5 1472 492 32 0 0 chr1 116378035 116378097 -80817335 + (A)n Simple_repeat Simple_repeat 1 62 0 5 1472 180 0 0 0 chr1 116378109 116378129 -80817303 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1472 669 331 55 82 chr1 116378341 116378718 -80816714 - MTE2b LTR MaLR -3 376 1 5 1472 180 0 0 0 chr1 116378752 116378772 -80816660 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1472 237 178 0 0 chr1 116379182 116379227 -80816205 + T-rich Low_complexity Low_complexity 1 45 0 5 1472 3705 2 0 7 chr1 116379266 116379685 -80815747 - L1Md_T LINE L1 0 6582 6167 5 1472 712 51 0 0 chr1 116379685 116379783 -80815649 + L1_Mm LINE L1 1206 1303 -4580 5 1472 196 358 0 0 chr1 116379798 116379865 -80815567 - L2 LINE L2 -554 2865 2799 5 1472 232 350 66 41 chr1 116380088 116380210 -80815222 - MTE2b LTR MaLR -154 225 101 5 1472 530 293 35 0 chr1 116380655 116380829 -80814603 - B3A SINE B2 -18 180 1 5 1472 465 344 16 5 chr1 116380866 116381050 -80814382 - B3A SINE B2 -6 192 7 5 1472 231 338 78 39 chr1 116381144 116381298 -80814134 + Tigger5 DNA MER2_type 33 192 -2214 5 1472 670 272 173 29 chr1 116381316 116381733 -80813699 + RCHARR1 DNA MER1_type 6 482 -492 5 1472 645 165 25 34 chr1 116381867 116381986 -80813446 + RSINE1 SINE B4 12 129 -36 5 1472 327 25 0 0 chr1 116381987 116382027 -80813405 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1472 1434 238 84 20 chr1 116382068 116382506 -80812926 + RCHARR1 DNA MER1_type 493 958 -16 5 1472 335 308 23 103 chr1 116382531 116382676 -80812756 + B3A SINE B2 37 178 -20 5 1472 366 74 0 0 chr1 116382676 116382730 -80812702 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1472 335 308 23 103 chr1 116382730 116382758 -80812674 + B3A SINE B2 179 196 -2 5 1472 243 268 0 0 chr1 116382836 116382892 -80812540 + Tigger5 DNA MER2_type 2351 2406 0 5 1472 22 0 0 0 chr1 116382996 116383018 -80812414 + AT_rich Low_complexity Low_complexity 1 22 0 5 1472 297 0 0 0 chr1 116383018 116383051 -80812381 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1472 3797 124 38 3 chr1 116383051 116383681 -80811751 - Lx2A LINE L1 -15 6993 6342 5 1472 224 131 15 62 chr1 116383681 116383746 -80811686 + A-rich Low_complexity Low_complexity 4 65 0 5 1472 351 102 16 78 chr1 116383751 116383815 -80811617 - Lx2A1 LINE L1 -667 6341 6282 5 1472 993 110 0 40 chr1 116383850 116384002 -80811430 - B1_Mus2 SINE Alu -1 146 1 5 1472 21 36 0 0 chr1 116384352 116384380 -80811052 + AT_rich Low_complexity Low_complexity 1 28 0 5 1472 1104 85 0 0 chr1 116385308 116385461 -80809971 + (TC)n Simple_repeat Simple_repeat 2 154 0 5 1472 567 261 45 83 chr1 116385472 116385760 -80809672 + Lx7 LINE L1 7418 7694 -2 5 1472 1981 45 0 0 chr1 116386188 116386431 -80809001 + L1Md_T LINE L1 6340 6582 0 6 1472 1808 216 29 3 chr1 116387024 116387400 -80808032 - ORR1B1 LTR MaLR -8 386 1 6 1472 370 339 64 32 chr1 116387400 116387523 -80807909 + RSINE1 SINE B4 22 148 -17 6 1472 1197 167 114 0 chr1 116387976 116388222 -80807210 - Lx LINE L1 -2 6652 6379 6 1472 293 194 69 3 chr1 116388282 116388369 -80807063 - MTEa LTR MaLR -10 369 280 6 1472 243 312 0 59 chr1 116388681 116388734 -80806698 + MLT1A0 LTR MaLR 242 292 -73 6 1472 1801 218 67 21 chr1 116388734 116389211 -80806221 + RLTR19 LTR ERVK 1 499 0 6 1472 243 312 0 59 chr1 116389211 116389259 -80806173 + MLT1A0 LTR MaLR 293 337 -28 6 1472 1122 235 193 0 chr1 116389438 116389749 -80805683 - MTEb LTR MaLR -8 371 1 6 1472 486 0 0 0 chr1 116389822 116389876 -80805556 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1472 287 25 25 0 chr1 116390639 116390679 -80804753 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1472 526 370 35 21 chr1 116390682 116390972 -80804460 - RMER15 LTR ERVL -16 559 266 6 1473 369 0 0 0 chr1 116392473 116392514 -80802918 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1473 426 143 0 0 chr1 116392514 116392605 -80802827 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1473 776 88 0 9 chr1 116392610 116392725 -80802707 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 6 1473 279 116 0 0 chr1 116392725 116392768 -80802664 + Lx3A LINE L1 5935 5977 -1004 6 1473 843 286 61 20 chr1 116393273 116393616 -80801816 + ORR1E LTR MaLR 1 357 -2 6 1473 1187 226 16 25 chr1 116393731 116394048 -80801384 - RMER1C Other Other -2 1340 1027 6 1473 575 221 147 0 chr1 116394055 116394191 -80801241 - Lx4B LINE L1 -693 6365 6210 6 1473 981 248 90 8 chr1 116394208 116394476 -80800956 + Lx5 LINE L1 6758 7047 -3 6 1473 12489 132 13 1 chr1 116394491 116396469 -80798963 + L1_Mus3 LINE L1 3859 5859 -24 6 1473 278 26 26 0 chr1 116396469 116396508 -80798924 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 6 1473 2308 101 21 0 chr1 116396508 116396561 -80798871 + L1_Mus3 LINE L1 5860 5919 -719 6 1473 36471 30 3 9 chr1 116396582 116401794 -80793638 + L1Md_T LINE L1 416 5586 -297 6 1473 8263 41 1 0 chr1 116401794 116402789 -80792643 + L1Md_T LINE L1 5587 6582 0 6 1473 4073 122 13 3 chr1 116402792 116403423 -80792009 + L1_Mus3 LINE L1 5998 6634 -4 6 1473 645 334 25 28 chr1 116403476 116403843 -80791589 - RMER1C Other Other -341 1001 408 6 1473 382 352 97 39 chr1 116404044 116404251 -80791181 - Tigger5 DNA MER2_type -2186 220 2 6 1473 189 0 0 0 chr1 116404261 116404282 -80791150 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1473 23 0 0 0 chr1 116404372 116404395 -80791037 + AT_rich Low_complexity Low_complexity 1 23 0 6 1473 554 296 115 16 chr1 116404467 116404659 -80790773 - B4 SINE B4 -73 219 9 6 1473 23 0 0 0 chr1 116404679 116404702 -80790730 + AT_rich Low_complexity Low_complexity 1 23 0 6 1473 313 347 80 26 chr1 116405231 116405382 -80790050 + RSINE1 SINE B4 7 165 0 6 1473 210 71 0 0 chr1 116405414 116405442 -80789990 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1473 207 69 0 0 chr1 116406416 116406445 -80788987 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1473 461 92 13 0 chr1 116406534 116406610 -80788822 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 6 1473 270 116 0 0 chr1 116406906 116406949 -80788483 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1473 204 40 0 0 chr1 116407187 116407212 -80788220 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1473 480 265 20 26 chr1 116407249 116407400 -80788032 - RLTR11B LTR ERVK -25 428 279 6 1473 696 292 16 105 chr1 116407441 116407755 -80787677 - RLTR11B LTR ERVK -167 286 1 6 1473 339 25 0 0 chr1 116407824 116407864 -80787568 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1473 392 343 52 10 chr1 116408460 116408749 -80786683 + Lx7 LINE L1 5597 5897 -1799 6 1473 6354 146 1 34 chr1 116409048 116409793 -80785639 - L1_Mm LINE L1 -184 5699 4957 6 1473 1389 140 13 4 chr1 116409793 116410030 -80785402 + L1_Mus3 LINE L1 6400 6638 0 6 1473 6354 146 1 34 chr1 116410030 116410385 -80785047 - L1_Mm LINE L1 -927 4956 4635 6 1473 23 0 0 0 chr1 116411595 116411618 -80783814 + AT_rich Low_complexity Low_complexity 1 23 0 6 1473 207 69 0 0 chr1 116411682 116411711 -80783721 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1473 218 364 52 43 chr1 116411755 116411870 -80783562 - B3A SINE B2 -80 118 3 6 1473 1382 286 53 91 chr1 116412173 116412734 -80782698 + RMER15 LTR ERVL 33 572 -3 6 1473 531 270 40 0 chr1 116412741 116412867 -80782565 + RSINE1 SINE B4 16 146 -19 6 1473 348 64 0 0 chr1 116412877 116412924 -80782508 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1473 720 170 7 7 chr1 116413132 116413274 -80782158 + B2_Mm2 SINE B2 53 194 -1 6 1473 564 298 25 78 chr1 116413581 116413785 -80781647 - B3A SINE B2 -5 193 1 6 1473 1206 304 34 34 chr1 116413830 116414248 -80781184 + MTD LTR MaLR 1 418 -1 6 1473 22 88 0 0 chr1 116414342 116414399 -80781033 + AT_rich Low_complexity Low_complexity 1 57 0 6 1473 653 311 0 57 chr1 116414841 116415035 -80780397 + B3A SINE B2 1 183 -15 6 1473 842 314 50 52 chr1 116415073 116415476 -80779956 - Lx8 LINE L1 -53 7420 7019 6 1473 262 308 13 0 chr1 116416394 116416472 -80778960 + MTEa LTR MaLR 248 326 -53 6 1473 411 125 0 0 chr1 116416919 116416991 -80778441 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1473 217 304 18 0 chr1 116417439 116417495 -80777937 - B4A SINE B4 -200 92 36 6 1473 2973 75 12 5 chr1 116418119 116418535 -80776897 + BGLII LTR ERVK 1 419 -2 6 1473 207 0 0 0 chr1 116418571 116418594 -80776838 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 6 1473 6170 158 65 7 chr1 116418594 116419725 -80775707 - Lx4A LINE L1 -5 7053 5857 6 1473 467 305 29 6 chr1 116419725 116419900 -80775532 - MT2A LTR ERVL -56 477 299 6 1473 3418 209 69 21 chr1 116419900 116420679 -80774753 + RMER13A LTR ERVK 1 902 -6 6 1473 789 254 24 83 chr1 116420709 116420962 -80774470 - MT2A LTR ERVL -295 238 1 6 1473 361 271 64 18 chr1 116421225 116421334 -80774098 - MTEa LTR MaLR -14 365 252 6 1473 289 68 68 14 chr1 116421344 116421418 -80774014 + (TTTTTG)n Simple_repeat Simple_repeat 2 79 0 6 1473 286 319 138 28 chr1 116421419 116421564 -80773868 - MTEa LTR MaLR -122 257 97 6 1473 332 187 40 0 chr1 116422303 116422378 -80773054 - HAL1-3A_ME LINE L1 -830 2028 1951 6 1473 806 38 19 0 chr1 116422381 116422486 -80772946 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 6 1473 1969 123 12 58 chr1 116422493 116422838 -80772594 + ORR1A4 LTR MaLR 1 329 0 6 1473 2292 156 5 5 chr1 116423128 116423508 -80771924 + RLTR14 LTR ERV1 3 382 0 6 1473 259 293 81 67 chr1 116423931 116424154 -80771278 - Tigger7 DNA MER2_type -49 2442 2217 6 1473 569 347 62 33 chr1 116424206 116424480 -80770952 - B4A SINE B4 -3 289 8 6 1473 277 350 25 17 chr1 116424700 116424819 -80770613 - B4A SINE B4 -131 161 42 6 1473 594 308 56 16 chr1 116426053 116426304 -80769128 + RMER15 LTR ERVL 279 539 -36 6 1473 960 307 120 11 chr1 116426636 116426985 -80768447 + MTD LTR MaLR 19 405 -14 6 1473 775 328 81 29 chr1 116427127 116427400 -80768032 + B4 SINE B4 6 292 0 6 1473 25 31 0 0 chr1 116427639 116427671 -80767761 + AT_rich Low_complexity Low_complexity 1 32 0 6 1473 479 183 22 17 chr1 116428070 116428248 -80767184 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1473 848 292 70 22 chr1 116428861 116429131 -80766301 - B4 SINE B4 -4 288 6 6 1473 711 315 94 16 chr1 116429634 116429879 -80765553 + B4 SINE B4 3 266 -26 6 1473 1245 64 0 0 chr1 116429885 116430057 -80765375 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 1473 332 43 22 0 chr1 116430057 116430102 -80765330 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1473 306 0 0 0 chr1 116430885 116430919 -80764513 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1473 1224 349 63 24 chr1 116431389 116432025 -80763407 - MTEa-int LTR MaLR -906 674 14 6 1473 261 200 48 32 chr1 116432038 116432100 -80763332 - MTEa LTR MaLR 0 379 317 6 1473 3424 45 0 2 chr1 116432220 116432648 -80762784 - L1Md_T LINE L1 -478 6104 5678 6 1473 3939 60 2 2 chr1 116432648 116433146 -80762286 + L1Md_F2 LINE L1 6084 6581 -1 6 1473 745 239 5 32 chr1 116433146 116433170 -80762262 - L1ME2 LINE L1 -455 5709 5690 6 1473 1247 282 3 3 chr1 116433343 116433628 -80761804 - ORR1D1-int LTR MaLR -376 994 710 6 1473 1018 254 155 9 chr1 116433626 116433948 -80761484 - ORR1D1-int LTR MaLR -1001 369 1 6 1473 366 282 199 30 chr1 116433948 116434142 -80761290 - ORR1D1 LTR MaLR -12 362 135 6 1473 422 278 21 0 chr1 116434121 116434218 -80761214 - PB1D10 SINE Alu -2 115 17 6 1473 428 341 89 0 chr1 116434872 116435007 -80760425 + B3A SINE B2 5 151 -47 6 1473 567 312 78 0 chr1 116435753 116435907 -80759525 + B3A SINE B2 1 166 -32 6 1473 348 24 0 0 chr1 116435907 116435948 -80759484 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1473 432 250 130 12 chr1 116437764 116437926 -80757506 + MER53 DNA hAT 1 181 -12 6 1473 201 241 17 17 chr1 116437991 116438050 -80757382 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1473 507 318 106 47 chr1 116438076 116438330 -80757102 - B4A SINE B4 -21 271 3 6 1473 304 250 109 126 chr1 116438441 116438624 -80756808 + B3A SINE B2 3 182 -16 6 1473 242 213 48 16 chr1 116438663 116438725 -80756707 + MIRb SINE MIR 201 264 -4 6 1473 381 168 0 0 chr1 116439638 116439691 -80755741 + T-rich Low_complexity Low_complexity 43 95 0 6 1473 1261 27 0 0 chr1 116439691 116439838 -80755594 - B1_Mm SINE Alu 0 147 1 6 1473 381 168 0 0 chr1 116439838 116439879 -80755553 + T-rich Low_complexity Low_complexity 2 42 0 6 1473 288 70 0 0 chr1 116440048 116440091 -80755341 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1473 235 227 0 167 chr1 116440350 116440440 -80754992 + PB1D10 SINE Alu 25 99 -18 6 1473 195 42 0 0 chr1 116440451 116440475 -80754957 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1473 677 302 5 59 chr1 116441146 116441350 -80754082 + B3 SINE B2 23 215 -1 6 1473 288 62 0 0 chr1 116442160 116442208 -80753224 + L1Md_F2 LINE L1 6531 6578 -4 6 1473 1036 280 30 106 chr1 116442221 116442617 -80752815 + MTE2b LTR MaLR 1 366 -13 6 1473 274 357 47 40 chr1 116442874 116443023 -80752409 - MER102b DNA MER1_type -184 157 8 7 1473 232 250 0 45 chr1 116444076 116444143 -80751289 + CT-rich Low_complexity Low_complexity 3 66 0 7 1473 667 335 0 5 chr1 116444723 116444915 -80750517 + ORR1E LTR MaLR 4 194 -165 7 1473 5957 107 103 9 chr1 116445355 116446308 -80749124 - L1_Mus3 LINE L1 -1 6637 5596 7 1473 369 300 45 0 chr1 116446991 116447101 -80748331 + RMER15 LTR ERVL 408 522 -53 7 1473 448 165 24 80 chr1 116447130 116447255 -80748177 + Lx3A LINE L1 6854 6971 -10 7 1473 5255 60 4 9 chr1 116447270 116447947 -80747485 - L1Md_F2 LINE L1 0 6582 5909 7 1473 307 277 22 70 chr1 116448194 116448423 -80747009 - L1M3 LINE L1 -839 5473 5256 7 1473 740 144 6 0 chr1 116448577 116448750 -80746682 + CT-rich Low_complexity Low_complexity 1 174 0 7 1473 349 270 45 116 chr1 116448750 116448905 -80746527 - B4A SINE B4 -148 144 1 7 1473 205 200 0 0 chr1 116448954 116448994 -80746438 + T-rich Low_complexity Low_complexity 1 40 0 7 1473 624 317 103 8 chr1 116449016 116449493 -80745939 - L1M3 LINE L1 -1128 5012 4491 7 1473 385 281 208 42 chr1 116449494 116449921 -80745511 + L1MB1 LINE L1 5568 6065 -124 7 1473 28 29 0 0 chr1 116450355 116450390 -80745042 + AT_rich Low_complexity Low_complexity 1 35 0 7 1473 239 222 0 0 chr1 116450578 116450632 -80744800 - MER33 DNA MER1_type -22 302 249 7 1473 593 337 55 15 chr1 116450640 116450914 -80744518 + B4A SINE B4 2 286 -6 7 1473 357 265 121 5 chr1 116450979 116451169 -80744263 - MER33 DNA MER1_type -79 245 34 7 1473 365 346 36 51 chr1 116451494 116451631 -80743801 - ID_B1 SINE B4 -87 137 3 7 1473 1062 295 78 11 chr1 116452256 116452613 -80742819 - Lx6 LINE L1 -59 7401 7021 7 1473 314 229 56 14 chr1 116453050 116453121 -80742311 - B4 SINE B4 -217 75 2 7 1473 35374 36 1 0 chr1 116453882 116459993 -80735439 + L1Md_T LINE L1 1 5589 -297 7 1473 8958 6 0 0 chr1 116459993 116460989 -80734443 + L1Md_T LINE L1 5590 6585 0 7 1473 648 360 64 50 chr1 116461218 116461560 -80733872 - ORR1E LTR MaLR -9 350 4 7 1473 246 160 0 0 chr1 116461958 116462008 -80733424 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1473 1647 207 108 154 chr1 116462026 116462667 -80732765 + RMER19C LTR ERVK 1 611 0 7 1473 3305 238 10 8 chr1 116462667 116463391 -80732041 + MurERV4_19-int LTR ERVK 1 725 -5055 7 1473 2954 110 4 39 chr1 116463412 116463876 -80731556 - L1_Mus3 LINE L1 -2 6636 6189 7 1473 373 218 0 11 chr1 116463892 116463907 -80731525 + L1MD3 LINE L1 5742 5755 -2240 7 1473 1312 73 0 11 chr1 116463907 116464088 -80731344 - L1Md_F2 LINE L1 -14 6568 6390 7 1473 4887 63 27 3 chr1 116464088 116464722 -80730710 + L1Md_F2 LINE L1 5725 6373 -209 7 1473 1163 151 5 0 chr1 116464718 116464924 -80730508 - L1_Mur1 LINE L1 -1142 4744 4538 7 1473 1366 175 16 0 chr1 116464922 116465168 -80730264 + Lx3A LINE L1 6175 6424 -557 7 1473 856 156 12 0 chr1 116465272 116465432 -80730000 + MurERV4_19-int LTR ERVK 4564 4725 -1055 7 1473 231 88 0 0 chr1 116465441 116465475 -80729957 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 7 1473 427 201 0 181 chr1 116465475 116465657 -80729775 - Lx4A LINE L1 -3 7055 6907 7 1473 3200 219 66 26 chr1 116465669 116466623 -80728809 + MurERV4_19-int LTR ERVK 4754 5745 -35 7 1473 2008 215 81 112 chr1 116466632 116467259 -80728173 + RMER19C LTR ERVK 1 608 -3 7 1473 1346 74 16 10 chr1 116467845 116468037 -80727395 + L1Md_F2 LINE L1 6388 6580 -2 7 1473 232 320 51 0 chr1 116468343 116468421 -80727011 + MTE2b LTR MaLR 18 99 -280 7 1473 661 306 60 63 chr1 116468431 116468875 -80726557 + MTE2b LTR MaLR 58 371 -8 7 1473 444 37 0 0 chr1 116468917 116468971 -80726461 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1473 1123 88 0 0 chr1 116469073 116469220 -80726212 - B1_Mus1 SINE Alu -1 147 1 7 1473 22 0 0 0 chr1 116469323 116469345 -80726087 + AT_rich Low_complexity Low_complexity 1 22 0 7 1473 670 330 35 25 chr1 116469383 116469585 -80725847 - B4A SINE B4 -86 206 3 7 1473 1796 48 0 4 chr1 116469682 116469912 -80725520 - L1Md_F2 LINE L1 -1 6581 6353 7 1473 4119 86 24 5 chr1 116469915 116470497 -80724935 - L1Md_F2 LINE L1 -6 6576 5984 7 1473 693 195 42 0 chr1 116470890 116471008 -80724424 - ETnERV2-int LTR ERVK -214 7192 7070 7 1473 3018 68 0 0 chr1 116471009 116471392 -80724040 - L1Md_F2 LINE L1 -593 5989 5607 7 1473 586 217 33 8 chr1 116471408 116471529 -80723903 - B1_Mus2 SINE Alu -1 146 23 7 1473 357 152 0 0 chr1 116472801 116472860 -80722572 + L1Md_F LINE L1 269 327 -6192 7 1473 20108 115 81 42 chr1 116472860 116474723 -80720709 + L1Md_F2 LINE L1 98 1765 -4118 7 1473 8166 44 0 0 chr1 116474723 116475719 -80719713 + L1Md_A LINE L1 5587 6582 0 7 1473 20108 88 154 118 chr1 116475719 116478972 -80716460 + L1Md_F2 LINE L1 1766 5234 -649 7 1473 540 0 0 0 chr1 116478972 116479032 -80716400 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1473 20108 88 154 118 chr1 116479032 116479367 -80716065 + L1Md_F2 LINE L1 5235 5584 -299 7 1473 7893 56 2 2 chr1 116479368 116480362 -80715070 + L1Md_F2 LINE L1 5587 6580 -2 7 1473 219 204 18 36 chr1 116480445 116480501 -80714931 + G-rich Low_complexity Low_complexity 3 57 0 7 1473 318 195 0 0 chr1 116480619 116480701 -80714731 + CT-rich Low_complexity Low_complexity 1 82 0 7 1473 2047 209 41 0 chr1 116480741 116481129 -80714303 + Lx4A LINE L1 6654 7057 -1 7 1473 181 135 74 37 chr1 116481165 116481219 -80714213 - MIRc SINE MIR -15 253 198 7 1473 576 316 70 14 chr1 116481754 116481863 -80713569 - RMER15 LTR ERVL -64 511 392 7 1473 302 0 26 0 chr1 116481863 116481901 -80713531 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1473 576 316 70 14 chr1 116481901 116482006 -80713426 - RMER15 LTR ERVL -184 391 286 7 1473 593 323 108 45 chr1 116482462 116482841 -80712591 + MTD LTR MaLR 3 405 -14 7 1473 192 163 0 0 chr1 116482989 116483032 -80712400 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1473 1346 163 23 8 chr1 116483096 116483362 -80712070 - Lx LINE L1 -9 6645 6376 7 1473 260 372 10 0 chr1 116483424 116483526 -80711906 + PB1D10 SINE Alu 8 110 -7 7 1473 629 341 89 52 chr1 116484781 116485319 -80710113 - Lx8 LINE L1 -19 7454 6897 7 1473 586 319 18 12 chr1 116486150 116486318 -80709114 + MTE2b LTR MaLR 17 185 -194 7 1473 433 239 230 39 chr1 116487233 116487430 -80708002 - MTD LTR MaLR 0 419 181 7 1473 183 80 0 0 chr1 116487430 116487455 -80707977 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1473 21 36 0 0 chr1 116487467 116487495 -80707937 + AT_rich Low_complexity Low_complexity 1 28 0 7 1473 2155 42 0 0 chr1 116487502 116487761 -80707671 - L1Md_T LINE L1 -1 6581 6323 7 1473 356 301 27 98 chr1 116487761 116487945 -80707487 - MTD LTR MaLR -208 171 1 7 1473 324 280 217 21 chr1 116488182 116488369 -80707063 - B4 SINE B4 -63 229 6 7 1473 268 279 76 67 chr1 116488498 116488617 -80706815 - RMER5 LTR ERV1 -387 147 28 7 1473 278 370 55 0 chr1 116488990 116489136 -80706296 - MER21B LTR ERV1 -531 332 179 7 1473 761 266 117 25 chr1 116489331 116489613 -80705819 + MTEb LTR MaLR 72 379 0 7 1473 22 0 0 0 chr1 116489743 116489765 -80705667 + AT_rich Low_complexity Low_complexity 1 22 0 7 1473 390 129 0 0 chr1 116490304 116490366 -80705066 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 7 1473 1151 278 97 16 chr1 116490446 116490819 -80704613 - MTD LTR MaLR 0 419 17 7 1473 846 243 65 19 chr1 116490890 116491242 -80704190 + RLTR26 LTR ERVK 12 387 -519 7 1473 23 0 0 0 chr1 116491412 116491435 -80703997 + AT_rich Low_complexity Low_complexity 1 23 0 7 1473 219 114 0 0 chr1 116491506 116491541 -80703891 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 7 1473 384 179 0 0 chr1 116491573 116491651 -80703781 + (TG)n Simple_repeat Simple_repeat 2 79 0 7 1473 297 167 0 0 chr1 116491761 116491815 -80703617 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1473 635 273 14 14 chr1 116491815 116491956 -80703476 - RMER13B LTR ERVK 0 908 768 7 1473 322 378 25 8 chr1 116492090 116492210 -80703222 - B4A SINE B4 -170 122 1 7 1473 243 0 0 0 chr1 116492261 116492288 -80703144 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 7 1473 358 114 200 0 chr1 116492298 116492368 -80703064 + MTE2b LTR MaLR 296 379 0 7 1473 5078 92 16 3 chr1 116492642 116493403 -80702029 - MusHAL1 LINE L1 -4 2708 1938 7 1473 3336 86 5 65 chr1 116493412 116493983 -80701449 + MusHAL1 LINE L1 126 662 -2050 7 1473 22 0 0 0 chr1 116494391 116494413 -80701019 + AT_rich Low_complexity Low_complexity 1 22 0 7 1473 289 135 0 0 chr1 116494413 116494465 -80700967 - Lx8 LINE L1 -2 7471 7420 7 1473 885 350 11 4 chr1 116494790 116495065 -80700367 - B4 SINE B4 -14 278 2 7 1473 613 296 0 0 chr1 116495416 116495548 -80699884 - ID_B1 SINE B4 -3 221 90 7 1473 21 0 0 0 chr1 116495881 116495902 -80699530 + AT_rich Low_complexity Low_complexity 1 21 0 7 1473 2139 181 53 62 chr1 116496013 116496544 -80698888 - MusHAL1 LINE L1 -1215 1497 972 7 1473 2230 243 67 21 chr1 116496523 116497146 -80698286 + Lx2B LINE L1 6349 7000 0 7 1473 299 275 154 0 chr1 116497279 116497370 -80698062 + B4A SINE B4 174 278 -14 7 1473 21 36 0 0 chr1 116498018 116498046 -80697386 + AT_rich Low_complexity Low_complexity 1 28 0 7 1473 1591 48 10 0 chr1 116498730 116498936 -80696496 + L1Md_F2 LINE L1 6375 6582 0 7 1473 272 27 27 0 chr1 116499005 116499042 -80696390 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1473 285 29 0 0 chr1 116499339 116499373 -80696059 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1473 800 108 59 52 chr1 116499424 116499560 -80695872 - L1_Mus2 LINE L1 -123 6443 6307 7 1473 4418 18 0 0 chr1 116500042 116500535 -80694897 + MT2_Mm LTR ERVL 1 493 0 1 1473 45277 15 6 0 chr1 116500535 116505861 -80689571 + MERVL-int LTR ERVL 1 5360 -125 1 1473 390 167 46 35 chr1 116505861 116505948 -80689484 + ORR1A3-int LTR MaLR 553 640 -1323 2 1473 302 0 0 0 chr1 116505948 116505986 -80689446 + MERVL-int LTR ERVL 5448 5485 0 1 1473 4418 18 0 0 chr1 116505986 116506479 -80688953 + MT2_Mm LTR ERVL 1 493 0 1 1473 252 0 0 0 chr1 116506497 116506525 -80688907 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3 1473 266 26 53 0 chr1 116506531 116506569 -80688863 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1473 249 333 0 13 chr1 116507723 116507799 -80687633 + ID SINE ID 6 80 -144 5 1473 3631 276 65 17 chr1 116508705 116509827 -80685605 - Lx6 LINE L1 -5 7455 6280 6 1473 6209 124 16 19 chr1 116509842 116510867 -80684565 - Lx LINE L1 -6 6648 5628 7 1473 338 273 91 0 chr1 116510865 116510964 -80684468 - Lx6 LINE L1 -1181 6279 6172 6 1473 1797 119 9 65 chr1 116511610 116511951 -80683481 - RLTRETN_Mm LTR ERVK 0 322 1 8 1473 33430 75 9 7 chr1 116512142 116518302 -80677130 - L1Md_F3 LINE L1 0 6584 413 9 1473 2026 141 9 3 chr1 116518332 116518660 -80676772 - L1_Mus3 LINE L1 -6 6632 6303 1 1473 22 94 0 0 chr1 116518735 116518799 -80676633 + AT_rich Low_complexity Low_complexity 1 64 0 1 1473 24 53 0 0 chr1 116518817 116518855 -80676577 + AT_rich Low_complexity Low_complexity 1 38 0 1 1473 560 290 7 14 chr1 116519015 116519162 -80676270 + B3 SINE B2 2 147 -69 1 1473 309 51 0 0 chr1 116519162 116519201 -80676231 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1 1473 421 299 53 79 chr1 116519201 116519242 -80676190 + B2_Mm2 SINE B2 135 185 -10 1 1473 324 0 0 0 chr1 116519616 116519652 -80675780 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1473 303 49 0 0 chr1 116519654 116519695 -80675737 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1473 229 289 10 20 chr1 116520352 116520451 -80674981 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 1 1473 713 323 5 25 chr1 116520456 116520653 -80674779 + B3A SINE B2 6 198 0 1 1473 513 361 6 6 chr1 116521031 116521201 -80674231 + B4 SINE B4 122 291 -1 2 1473 285 385 12 5 chr1 116522272 116522370 -80673062 + B1F1 SINE Alu 1 96 -21 2 1473 332 281 108 84 chr1 116522398 116522565 -80672867 + B3 SINE B2 42 212 -4 2 1473 319 289 9 28 chr1 116522640 116522747 -80672685 + GA-rich Low_complexity Low_complexity 4 108 0 2 1474 23904 63 10 1 chr1 116523232 116527275 -80668157 - L1Md_F3 LINE L1 -1 6583 2503 2 1474 1934 191 77 11 chr1 116527324 116527768 -80667664 - RLTR28 LTR ERVL 0 524 52 2 1474 760 272 50 22 chr1 116528067 116528289 -80667143 - RMER15 LTR ERVL -1 574 347 2 1474 577 293 91 57 chr1 116529177 116529387 -80666045 - ID_B1 SINE B4 -3 221 5 2 1474 589 308 26 67 chr1 116529826 116530093 -80665339 - MTE2b LTR MaLR 0 379 124 2 1474 607 234 136 12 chr1 116530093 116530335 -80665097 - RLTR10A LTR ERVK 0 411 140 2 1474 591 237 21 36 chr1 116530370 116530510 -80664922 - MTE2b LTR MaLR -237 142 5 2 1474 584 302 34 39 chr1 116530825 116531004 -80664428 + B4A SINE B4 64 241 -51 3 1474 674 212 44 44 chr1 116531062 116531119 -80664313 - L1_Rod LINE L1 -996 4851 4799 3 1474 6375 63 4 11 chr1 116531119 116531933 -80663499 + RLTR13C2 LTR ERVK 1 808 0 3 1474 674 212 44 44 chr1 116531933 116532102 -80663330 - L1_Rod LINE L1 -1049 4798 4625 3 1474 385 293 86 71 chr1 116532499 116532869 -80662563 - RMER10A LTR ERVL -12 430 86 3 1474 634 295 85 0 chr1 116533286 116533486 -80661946 - ID_B1 SINE B4 -6 218 2 3 1474 228 288 58 73 chr1 116533558 116533594 -80661838 - RMER17C LTR ERVK -71 339 282 3 1474 266 237 65 13 chr1 116533594 116533671 -80661761 - RMER21B LTR ERV1 -273 569 489 3 1474 228 288 58 73 chr1 116533671 116533749 -80661683 - RMER17C LTR ERVK -71 281 152 3 1474 789 158 6 11 chr1 116534045 116534224 -80661208 + GA-rich Low_complexity Low_complexity 1 178 0 3 1474 1083 114 0 0 chr1 116534249 116534415 -80661017 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 3 1474 490 336 43 34 chr1 116534425 116534788 -80660644 - MTE2a LTR MaLR -40 339 1 3 1474 282 260 62 38 chr1 116535438 116535518 -80659914 + RLTR28B LTR ERVL 400 481 0 4 1474 2793 206 65 51 chr1 116535854 116536266 -80659166 + RMER17D LTR ERVK 26 425 -464 4 1474 1074 144 0 0 chr1 116536266 116536446 -80658986 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1474 2793 206 65 51 chr1 116536446 116536870 -80658562 + RMER17D LTR ERVK 426 873 -16 4 1474 340 273 29 29 chr1 116537300 116537402 -80658030 + RLTR20B3 LTR ERVK 416 521 -56 4 1474 837 231 59 0 chr1 116537414 116537600 -80657832 + RLTR15 LTR ERVK 163 359 0 4 1474 312 355 52 26 chr1 116537650 116537841 -80657591 + MLT1D LTR MaLR 310 505 0 4 1474 2939 187 90 139 chr1 116538028 116538977 -80656455 - RLTR13D6 LTR ERVK 0 902 1 4 1474 7465 57 2 4 chr1 116539406 116540810 -80654622 - L1Md_F2 LINE L1 0 6582 5182 4 1474 594 62 0 0 chr1 116540810 116540891 -80654541 + 4.5SRNA scRNA scRNA 5 85 -9 4 1474 307 191 191 43 chr1 116540813 116540928 -80654504 + B1_Mur4 SINE Alu 10 141 -9 4 1474 1777 203 29 26 chr1 116541019 116541434 -80653998 + RLTR22_Mur LTR ERVK 1 416 -1432 5 1474 854 233 21 0 chr1 116541437 116541630 -80653802 - L1VL4 LINE L1 -6002 300 104 5 1474 2011 155 8 3 chr1 116541623 116541986 -80653446 + L1_Mur2 LINE L1 5073 5437 -440 5 1474 1944 192 88 7 chr1 116541984 116542439 -80652993 + Lx2 LINE L1 6506 6997 0 5 1474 2758 194 62 29 chr1 116542452 116543037 -80652395 + RLTR22_Mur LTR ERVK 1238 1841 -7 5 1474 522 169 0 0 chr1 116543393 116543535 -80651897 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1474 1391 269 28 33 chr1 116543580 116544003 -80651429 + MTC LTR MaLR 1 421 0 5 1474 652 350 25 59 chr1 116544496 116544782 -80650650 + B4A SINE B4 13 288 -4 5 1474 1258 312 20 10 chr1 116544865 116545269 -80650163 + RMER1B Other Other 6 413 -653 5 1474 280 325 0 0 chr1 116545288 116545371 -80650061 + RMER1B Other Other 389 471 -595 5 1474 2567 288 70 13 chr1 116545338 116546169 -80649263 + RMER1A Other Other 150 1027 -3 5 1474 411 21 0 0 chr1 116546473 116546521 -80648911 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1474 970 308 59 28 chr1 116547064 116547421 -80648011 + MTE2b LTR MaLR 12 379 0 6 1474 560 311 14 0 chr1 116547687 116547764 -80647668 + ID_B1 SINE B4 6 155 -69 6 1474 215 376 31 41 chr1 116547764 116547835 -80647597 + B1F1 SINE Alu 4 75 -74 6 1474 381 93 0 0 chr1 116547835 116547889 -80647543 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1474 215 376 31 41 chr1 116547889 116547914 -80647518 + B1F1 SINE Alu 76 99 -50 6 1474 21 0 0 0 chr1 116548038 116548059 -80647373 + AT_rich Low_complexity Low_complexity 1 21 0 6 1474 1094 97 7 0 chr1 116548150 116548294 -80647138 + B1_Mus2 SINE Alu 3 147 0 6 1474 369 0 0 0 chr1 116548294 116548335 -80647097 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1474 1259 281 58 8 chr1 116548850 116549209 -80646223 + MTEa LTR MaLR 1 377 -2 6 1474 1571 266 40 7 chr1 116549315 116549720 -80645712 + MTD LTR MaLR 1 418 -1 6 1474 213 196 0 0 chr1 116549933 116549984 -80645448 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1474 318 273 38 57 chr1 116551064 116551169 -80644263 - RLTR14 LTR ERV1 -4 378 276 7 1474 3593 46 2 0 chr1 116551194 116551653 -80643779 - L1Md_F3 LINE L1 -310 6274 5815 7 1474 2323 25 42 0 chr1 116551653 116551936 -80643496 + L1Md_F3 LINE L1 6275 6569 -15 7 1474 186 43 0 0 chr1 116551940 116551963 -80643469 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1474 309 322 0 0 chr1 116552017 116552104 -80643328 - MTE2b LTR MaLR -266 113 27 7 1474 791 290 27 31 chr1 116552733 116552957 -80642475 + ID_B1 SINE B4 2 224 0 7 1474 745 312 73 50 chr1 116553169 116553525 -80641907 + MTE2a LTR MaLR 47 417 -2 7 1474 2122 28 0 0 chr1 116553637 116553886 -80641546 - L1Md_A LINE L1 -2 6580 6332 7 1474 26896 45 0 5 chr1 116553886 116559309 -80636123 - L1Md_Gf LINE L1 -142 5744 249 7 1474 296 103 8 0 chr1 116559340 116559386 -80636046 - MMERVK10C-int LTR ERVK -7321 260 222 7 1474 1181 126 16 27 chr1 116559411 116559598 -80635834 - RLTR27 LTR ERVK 0 309 125 7 1474 410 229 40 17 chr1 116559902 116560038 -80635394 + MIR SINE MIR 121 264 -4 8 1474 32 43 0 0 chr1 116560307 116560353 -80635079 + AT_rich Low_complexity Low_complexity 1 46 0 8 1474 255 157 0 0 chr1 116560380 116560431 -80635001 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1474 1324 233 100 3 chr1 116560536 116560846 -80634586 + RMER20A LTR ERVK 1 340 -176 8 1474 350 262 109 104 chr1 116561725 116561917 -80633515 - B3A SINE B2 -2 196 4 8 1474 217 0 61 0 chr1 116561981 116562014 -80633418 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1474 1054 78 43 0 chr1 116562023 116562164 -80633268 - B1_Mm SINE Alu 0 147 1 8 1474 23 78 0 0 chr1 116562580 116562631 -80632801 + AT_rich Low_complexity Low_complexity 1 51 0 8 1474 629 79 55 0 chr1 116563226 116563353 -80632079 + (TA)n Simple_repeat Simple_repeat 2 135 0 8 1474 769 299 63 41 chr1 116563379 116563889 -80631543 - L1MA6 LINE L1 -143 6157 5637 8 1474 445 344 19 31 chr1 116563895 116564057 -80631375 - RSINE1 SINE B4 -2 163 4 9 1474 369 0 0 0 chr1 116564824 116564865 -80630567 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1474 348 284 95 0 chr1 116564866 116564961 -80630471 - RSINE1 SINE B4 -20 145 42 9 1474 254 275 14 0 chr1 116565252 116565321 -80630111 - ID SINE ID -153 71 2 9 1474 1024 30 15 0 chr1 116565706 116565838 -80629594 + (TC)n Simple_repeat Simple_repeat 1 134 0 9 1474 468 51 0 0 chr1 116565838 116565896 -80629536 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1474 3863 58 27 5 chr1 116566051 116567213 -80628219 - L1Md_F2 LINE L1 0 6582 5391 9 1474 3502 81 8 0 chr1 116567576 116568058 -80627374 + L1_Mm LINE L1 4915 5400 -483 9 1474 336 301 24 12 chr1 116568620 116568704 -80626728 + B3A SINE B2 5 89 -109 9 1474 29 28 0 0 chr1 116568738 116568774 -80626658 + AT_rich Low_complexity Low_complexity 1 36 0 9 1474 541 338 58 0 chr1 116569596 116569750 -80625682 + B3A SINE B2 16 178 -20 1 1474 315 0 0 0 chr1 116569765 116569800 -80625632 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1474 1043 219 22 22 chr1 116569807 116570036 -80625396 + RMER5 LTR ERV1 298 526 -8 1 1474 357 24 0 0 chr1 116570110 116570152 -80625280 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1474 234 307 44 22 chr1 116571998 116572088 -80623344 + MTEb LTR MaLR 60 151 -228 1 1474 554 332 43 34 chr1 116572095 116572304 -80623128 + B3A SINE B2 6 216 0 1 1474 326 257 0 0 chr1 116572399 116572469 -80622963 + MTEb LTR MaLR 296 365 -14 1 1474 233 29 29 0 chr1 116572544 116572578 -80622854 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1474 663 324 139 7 chr1 116572791 116573086 -80622346 + MTD LTR MaLR 1 334 -85 1 1474 1917 23 0 0 chr1 116573086 116573304 -80622128 + L1Md_F2 LINE L1 5369 5586 -297 1 1474 7817 62 3 0 chr1 116573304 116574296 -80621136 + L1Md_F2 LINE L1 5587 6581 -1 1 1474 300 244 39 0 chr1 116574311 116574389 -80621043 + MTD LTR MaLR 339 419 0 1 1474 558 259 72 147 chr1 116575108 116575377 -80620055 - MT2B LTR ERVL -129 472 90 1 1474 189 0 0 0 chr1 116575377 116575398 -80620034 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1 1474 548 257 74 158 chr1 116575398 116575488 -80619944 - MT2B LTR ERVL -444 89 3 1 1474 1284 279 35 3 chr1 116576342 116576709 -80618723 - MTEa LTR MaLR 0 379 1 1 1474 306 0 0 0 chr1 116577186 116577220 -80618212 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1474 548 330 23 101 chr1 116577260 116577567 -80617865 - B4A SINE B4 -8 284 2 1 1474 1427 253 33 29 chr1 116577949 116578368 -80617064 + MTC LTR MaLR 1 421 0 1 1474 25 0 0 0 chr1 116578492 116578517 -80616915 + AT_rich Low_complexity Low_complexity 1 25 0 1 1474 665 328 20 0 chr1 116578632 116578830 -80616602 - ID_B1 SINE B4 -13 211 10 1 1474 21 0 0 0 chr1 116579333 116579354 -80616078 + AT_rich Low_complexity Low_complexity 1 21 0 1 1474 552 331 93 34 chr1 116579516 116579926 -80615506 - Lx9 LINE L1 -8 7636 7203 1 1474 246 269 200 9 chr1 116580092 116580197 -80615235 - RSINE1 SINE B4 -37 128 4 1 1474 764 101 13 20 chr1 116580373 116580524 -80614908 + RMER17B LTR ERVK 312 461 -497 1 1474 240 35 0 0 chr1 116580524 116580553 -80614879 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1474 292 307 41 35 chr1 116581152 116581297 -80614135 - Cheshire DNA MER1_type -2162 258 113 1 1474 237 318 0 0 chr1 116581327 116581390 -80614042 + B3A SINE B2 32 94 -104 1 1474 558 172 0 59 chr1 116581594 116581730 -80613702 - L1Md_F3 LINE L1 -1 6583 6456 1 1474 3205 32 0 0 chr1 116581742 116582120 -80613312 + L1Md_T LINE L1 6205 6582 0 1 1474 626 84 234 0 chr1 116582125 116582232 -80613200 + L1_Mus2 LINE L1 6435 6566 0 1 1474 180 111 0 0 chr1 116582773 116582800 -80612632 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 1474 470 360 17 28 chr1 116582813 116582990 -80612442 + B3A SINE B2 6 180 -18 1 1474 186 43 0 0 chr1 116582990 116583013 -80612419 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1474 360 0 0 0 chr1 116583312 116583352 -80612080 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1474 532 358 16 21 chr1 116583366 116583560 -80611872 - ID_B1 SINE B4 -30 194 2 1 1474 346 346 45 38 chr1 116583879 116584011 -80611421 + B3A SINE B2 52 184 -32 1 1474 12673 121 25 5 chr1 116584011 116584421 -80611011 + L1_Mus2 LINE L1 3795 4206 -1677 1 1474 420 20 0 0 chr1 116584421 116584470 -80610962 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1474 12673 112 17 5 chr1 116584470 116586792 -80608640 + L1_Mus2 LINE L1 4207 6565 -1 1 1474 21 0 0 0 chr1 116586868 116586889 -80608543 + AT_rich Low_complexity Low_complexity 1 21 0 1 1474 1333 262 8 60 chr1 116587561 116587946 -80607486 - RMER20A LTR ERVK 0 516 152 1 1474 424 366 36 24 chr1 116588019 116588184 -80607248 + B4 SINE B4 126 292 0 1 1474 486 88 0 0 chr1 116588478 116588546 -80606886 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1474 225 108 0 0 chr1 116588595 116588632 -80606800 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1474 273 128 0 0 chr1 116588643 116588690 -80606742 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1474 382 326 10 0 chr1 116588699 116588797 -80606635 - B4 SINE B4 -7 285 187 1 1474 940 55 105 40 chr1 116588837 116588989 -80606443 - L1_Mus1 LINE L1 0 6567 6406 1 1474 271 315 6 159 chr1 116589025 116589195 -80606237 - B4 SINE B4 -145 147 4 1 1474 448 311 127 102 chr1 116589524 116589768 -80605664 - B4A SINE B4 0 292 43 1 1474 330 250 162 43 chr1 116589795 116589912 -80605520 - ID_B1 SINE B4 -1 223 93 1 1474 386 281 0 0 chr1 116590593 116590675 -80604757 + B4A SINE B4 1 82 -210 1 1474 301 291 143 18 chr1 116590703 116590815 -80604617 + B4A SINE B4 161 286 -6 1 1474 438 20 0 0 chr1 116590899 116590950 -80604482 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1474 517 329 21 21 chr1 116591011 116591154 -80604278 + RSINE1 SINE B4 3 145 -20 1 1474 1138 69 7 0 chr1 116591608 116591753 -80603679 - B1_Mm SINE Alu 0 147 2 1 1474 21 36 0 0 chr1 116591753 116591781 -80603651 + AT_rich Low_complexity Low_complexity 1 28 0 1 1474 232 304 0 0 chr1 116592266 116592322 -80603110 + ID_B1 SINE B4 119 174 -50 1 1474 835 75 8 8 chr1 116592382 116592516 -80602916 + L1_Mus2 LINE L1 6433 6566 0 1 1474 447 324 102 34 chr1 116592522 116593248 -80602184 + L1MB5 LINE L1 3073 3847 -2299 1 1474 536 326 22 27 chr1 116593375 116593558 -80601874 - B3 SINE B2 0 216 35 1 1474 306 352 11 11 chr1 116593568 116593657 -80601775 - B4A SINE B4 -194 98 10 1 1474 447 259 111 39 chr1 116593688 116594007 -80601425 + L1MB5 LINE L1 5710 6055 -119 1 1474 190 196 30 152 chr1 116594072 116594138 -80601294 + MIRc SINE MIR 106 163 -105 1 1474 4839 92 50 0 chr1 116594361 116595055 -80600377 - L1_Mus3 LINE L1 -6 6632 5904 1 1474 553 301 12 44 chr1 116595086 116595246 -80600186 + RSINE1 SINE B4 10 164 -1 1 1474 210 143 0 0 chr1 116595246 116595281 -80600151 + (CATG)n Simple_repeat Simple_repeat 3 37 0 1 1474 1501 27 16 16 chr1 116596208 116596397 -80599035 + B2_Mm1a SINE B2 1 189 -4 1 1474 539 332 50 83 chr1 116596596 116596642 -80598790 - B4A SINE B4 0 292 249 1 1474 477 0 0 0 chr1 116596642 116596695 -80598737 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1474 539 332 50 83 chr1 116596695 116596950 -80598482 - B4A SINE B4 -44 248 1 1 1474 258 32 0 0 chr1 116597331 116597362 -80598070 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1474 22 0 0 0 chr1 116597362 116597384 -80598048 + AT_rich Low_complexity Low_complexity 1 22 0 1 1474 11841 168 19 13 chr1 116597405 116600438 -80594994 - Lx LINE L1 -6 6648 3593 1 1474 306 67 0 0 chr1 116600457 116600502 -80594930 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 1 1474 199 54 0 51 chr1 116600923 116600962 -80594470 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1474 405 137 242 0 chr1 116600982 116601077 -80594355 - HAL1-3A_ME LINE L1 -765 2093 1976 1 1474 277 182 10 10 chr1 116601080 116601180 -80594252 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1474 25 31 0 0 chr1 116601290 116601322 -80594110 + AT_rich Low_complexity Low_complexity 1 32 0 1 1474 282 395 91 30 chr1 116601515 116601745 -80593687 + B4A SINE B4 35 278 -14 1 1474 2355 205 39 51 chr1 116602536 116603070 -80592362 + L1_Mur2 LINE L1 90 617 -6095 1 1474 994 220 132 108 chr1 116603072 116603459 -80591973 - RLTR11A LTR ERVK -130 398 3 1 1474 189 0 0 0 chr1 116603905 116603926 -80591506 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1474 185 178 0 22 chr1 116603980 116604026 -80591406 + A-rich Low_complexity Low_complexity 5 49 0 1 1474 278 347 73 46 chr1 116604051 116604202 -80591230 - MLT1A1 LTR MaLR -215 193 39 1 1474 228 35 0 0 chr1 116604858 116604887 -80590545 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1474 1010 335 29 6 chr1 116604911 116605262 -80590170 + MTE2b LTR MaLR 3 361 -18 1 1474 405 302 63 0 chr1 116605760 116605886 -80589546 + RSINE1 SINE B4 18 151 -14 1 1474 26 64 0 0 chr1 116605981 116606028 -80589404 + AT_rich Low_complexity Low_complexity 1 47 0 1 1474 228 73 35 35 chr1 116606921 116606978 -80588454 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 1 1474 2556 246 55 51 chr1 116607032 116607813 -80587619 + RMER17B LTR ERVK 1 784 -174 1 1474 380 311 81 68 chr1 116607787 116608022 -80587410 + RMER13B LTR ERVK 662 899 -9 1 1474 687 154 0 0 chr1 116608139 116608308 -80587124 + CT-rich Low_complexity Low_complexity 2 170 0 1 1474 378 42 0 0 chr1 116608308 116608356 -80587076 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1474 461 115 13 0 chr1 116608431 116608509 -80586923 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 1 1474 7878 42 1 4 chr1 116608535 116609495 -80585937 - L1Md_F2 LINE L1 -4 6578 5622 1 1474 207 188 0 0 chr1 116609527 116609575 -80585857 + T-rich Low_complexity Low_complexity 1 48 0 1 1474 949 206 36 45 chr1 116609575 116609799 -80585633 - Lx4A LINE L1 0 7058 6837 1 1474 8111 94 12 2 chr1 116609795 116610890 -80584542 - L1VL1 LINE L1 -2345 1353 254 1 1474 207 0 0 0 chr1 116610890 116610913 -80584519 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1474 8111 86 15 2 chr1 116610913 116611155 -80584277 - L1VL1 LINE L1 -6169 253 2 1 1474 1444 188 55 7 chr1 116611155 116611444 -80583988 - Lx4A LINE L1 -242 6816 6514 1 1474 2681 187 48 2 chr1 116611431 116611967 -80583465 + Lx4A LINE L1 5917 6477 -581 1 1474 361 341 54 8 chr1 116611967 116612097 -80583335 + B3A SINE B2 25 160 -38 1 1474 24 0 0 0 chr1 116612114 116612138 -80583294 + AT_rich Low_complexity Low_complexity 1 24 0 1 1474 224 30 30 0 chr1 116612506 116612539 -80582893 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1474 757 135 65 30 chr1 116612543 116612711 -80582721 - L1Md_F2 LINE L1 0 6582 6409 1 1474 360 289 22 11 chr1 116613491 116613582 -80581850 - B1F1 SINE Alu -57 92 1 1 1474 1861 54 4 0 chr1 116614609 116614849 -80580583 - L1Md_F2 LINE L1 0 6582 6342 1 1474 402 121 0 0 chr1 116615517 116615583 -80579849 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1474 27 49 0 0 chr1 116615592 116615633 -80579799 + AT_rich Low_complexity Low_complexity 1 41 0 1 1474 543 16 0 0 chr1 116616074 116616138 -80579294 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1474 198 176 0 0 chr1 116616140 116616191 -80579241 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 2 1474 226 281 18 0 chr1 116616192 116616249 -80579183 - B4A SINE B4 -20 272 215 2 1474 1219 249 114 40 chr1 116616319 116616671 -80578761 - ORR1C1 LTR MaLR 0 378 1 2 1474 369 386 47 36 chr1 116616680 116616957 -80578475 - B4A SINE B4 -10 282 3 2 1474 698 342 17 9 chr1 116616958 116617188 -80578244 - B4A SINE B4 -60 232 1 2 1474 1422 297 11 11 chr1 116617624 116617995 -80577437 - MTEb LTR MaLR -8 371 1 2 1474 252 0 0 0 chr1 116618816 116618844 -80576588 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1474 198 118 0 0 chr1 116618844 116618878 -80576554 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 2 1474 453 90 0 0 chr1 116618963 116619030 -80576402 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1474 1152 319 37 10 chr1 116619413 116619796 -80575636 - MTD LTR MaLR -24 395 3 2 1474 504 339 53 5 chr1 116619800 116619990 -80575442 + B4A SINE B4 39 237 -55 2 1474 575 264 132 96 chr1 116620055 116620420 -80575012 + RMER5 LTR ERV1 157 534 0 2 1474 375 239 34 0 chr1 116620946 116621034 -80574398 - RMER19B LTR ERVK -811 91 1 2 1474 539 320 70 0 chr1 116621068 116621268 -80574164 - B3 SINE B2 -1 215 2 2 1474 529 322 11 6 chr1 116621846 116622021 -80573411 - MTE2a LTR MaLR 0 379 204 2 1474 301 167 0 0 chr1 116622034 116622082 -80573350 + HAL1-3A_ME LINE L1 1968 2015 -843 2 1474 2028 215 69 21 chr1 116622082 116622561 -80572871 + RLTR16 LTR ERVK 4 505 0 2 1474 447 333 38 8 chr1 116622621 116622754 -80572678 - MTE2a LTR MaLR -233 146 10 2 1474 21 0 0 0 chr1 116623903 116623924 -80571508 + AT_rich Low_complexity Low_complexity 1 21 0 2 1474 342 0 0 0 chr1 116624286 116624324 -80571108 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2 1474 4184 167 42 1 chr1 116626057 116626861 -80568571 - L1_Mur2 LINE L1 -1454 4423 3587 2 1474 7636 165 8 18 chr1 116626867 116628241 -80567191 + L1_Mm LINE L1 4434 5793 -90 2 1474 38506 5 0 0 chr1 116628242 116633406 -80562026 + L1Md_A LINE L1 422 5586 -297 2 1474 8902 9 0 0 chr1 116633406 116634402 -80561030 + L1Md_A LINE L1 5587 6582 0 2 1474 1202 91 14 39 chr1 116635005 116635212 -80560220 - L1_Mus3 LINE L1 -8 6630 6429 2 1474 3012 304 82 22 chr1 116635239 116636381 -80559051 + Lx8 LINE L1 6224 7434 -39 2 1474 4985 140 26 12 chr1 116636381 116637241 -80558191 + Lx LINE L1 5783 6654 0 2 1474 400 309 78 13 chr1 116637602 116637756 -80557676 - ORR1D1 LTR MaLR -8 371 208 2 1474 744 275 98 14 chr1 116637865 116638079 -80557353 - ORR1D1 LTR MaLR -137 237 6 2 1474 242 194 129 14 chr1 116638067 116638141 -80557291 - B1_Mus2 SINE Alu -52 95 14 2 1474 324 0 0 0 chr1 116638151 116638187 -80557245 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1474 414 336 22 30 chr1 116638197 116638332 -80557100 - RSINE1 SINE B4 -29 136 3 2 1474 33 25 0 0 chr1 116638464 116638504 -80556928 + AT_rich Low_complexity Low_complexity 1 40 0 2 1474 484 346 89 30 chr1 116638554 116638825 -80556607 - Lx8 LINE L1 -10 7463 7177 2 1474 225 378 20 20 chr1 116638827 116638927 -80556505 - PB1D10 SINE Alu -5 112 13 2 1474 3255 69 5 0 chr1 116638927 116639346 -80556086 - L1_Mus2 LINE L1 -1 6565 6145 2 1474 397 291 26 7 chr1 116639442 116639594 -80555838 - L1MA4 LINE L1 -92 6208 6054 2 1474 9592 78 0 3 chr1 116639610 116641594 -80553838 - L1Md_F2 LINE L1 -7 6575 4598 2 1474 345 241 120 8 chr1 116642055 116642172 -80553260 + MLT1D LTR MaLR 357 486 -19 2 1474 201 94 0 0 chr1 116642762 116642794 -80552638 + (CAA)n Simple_repeat Simple_repeat 3 34 0 2 1474 231 146 0 0 chr1 116643805 116643846 -80551586 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 2 1474 255 294 145 40 chr1 116644103 116644227 -80551205 + B1F SINE Alu 11 147 -2 2 1474 204 67 0 0 chr1 116644336 116644366 -80551066 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1474 336 103 0 0 chr1 116644387 116644445 -80550987 + (CAA)n Simple_repeat Simple_repeat 2 59 0 2 1474 189 70 22 65 chr1 116645119 116645165 -80550267 + A-rich Low_complexity Low_complexity 2 45 0 2 1474 369 0 0 0 chr1 116645454 116645495 -80549937 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1474 906 84 0 0 chr1 116645495 116645636 -80549796 + (GA)n Simple_repeat Simple_repeat 1 142 0 2 1474 453 296 0 62 chr1 116645898 116646042 -80549390 + RMER1C Other Other 1203 1337 -5 2 1474 234 0 0 0 chr1 116646257 116646283 -80549149 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1474 35 0 0 0 chr1 116646308 116646343 -80549089 + AT_rich Low_complexity Low_complexity 1 35 0 2 1474 396 360 137 0 chr1 116646366 116646527 -80548905 - B3 SINE B2 -30 186 4 2 1474 463 161 8 8 chr1 116646746 116646865 -80548567 + CT-rich Low_complexity Low_complexity 2 120 0 2 1474 232 350 19 65 chr1 116646876 116646983 -80548449 + B2_Mm2 SINE B2 1 102 -93 2 1474 23 33 0 0 chr1 116647074 116647104 -80548328 + AT_rich Low_complexity Low_complexity 1 30 0 2 1474 256 268 3 20 chr1 116647236 116647338 -80548094 + L1MB8 LINE L1 6037 6139 -45 2 1474 393 22 0 0 chr1 116647683 116647729 -80547703 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1474 5275 182 12 8 chr1 116647755 116648785 -80546647 - L1_Mm LINE L1 -559 5800 4731 2 1474 6214 132 25 8 chr1 116648787 116649759 -80545673 + Lx LINE L1 5661 6648 -6 2 1474 493 325 70 19 chr1 116650150 116650407 -80545025 - RMER15 LTR ERVL -60 515 246 2 1474 257 304 185 34 chr1 116651780 116651899 -80543533 + B4A SINE B4 136 272 -20 2 1474 1081 304 40 9 chr1 116652108 116652433 -80542999 + Lx6 LINE L1 6996 7330 -130 2 1474 544 356 86 35 chr1 116653484 116653740 -80541692 - B4 SINE B4 -22 270 2 2 1475 333 0 0 0 chr1 116654328 116654365 -80541067 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1475 383 276 102 61 chr1 116654827 116655024 -80540408 - B3 SINE B2 -11 205 1 2 1475 286 348 28 14 chr1 116655331 116655474 -80539958 + L1MC1 LINE L1 6165 6309 -24 2 1475 459 271 11 28 chr1 116655661 116655843 -80539589 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1475 304 161 12 12 chr1 116655962 116656044 -80539388 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1475 357 282 18 18 chr1 116656056 116656281 -80539151 + (TATATG)n Simple_repeat Simple_repeat 1 225 0 2 1475 11109 14 0 0 chr1 116656973 116658944 -80536488 - L1Md_A LINE L1 -3 6579 4608 2 1475 7392 170 22 30 chr1 116659353 116661083 -80534349 - Lx3B LINE L1 -5 6968 5246 2 1475 37973 30 0 1 chr1 116661087 116667748 -80527684 - L1Md_T LINE L1 0 6585 1 2 1475 9167 142 24 25 chr1 116667747 116669427 -80526005 - Lx3B LINE L1 -628 5258 3580 2 1475 703 132 39 0 chr1 116669488 116669617 -80525815 - Lx3B LINE L1 -2889 2997 2864 2 1475 357 24 0 0 chr1 116669617 116669659 -80525773 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 1475 972 95 6 19 chr1 116669659 116669722 -80525710 + (TTC)n Simple_repeat Simple_repeat 3 64 0 2 1475 1048 119 0 11 chr1 116669722 116669901 -80525531 + (TCC)n Simple_repeat Simple_repeat 3 179 0 2 1475 972 95 6 19 chr1 116669901 116669998 -80525434 + (TTC)n Simple_repeat Simple_repeat 2 98 0 2 1475 2291 107 11 0 chr1 116670002 116670358 -80525074 - L1_Mus4 LINE L1 -5 6631 6272 2 1475 207 0 0 0 chr1 116670616 116670639 -80524793 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1475 269 329 37 31 chr1 116670787 116670950 -80524482 - L1M3 LINE L1 -3305 2835 2672 2 1475 498 377 51 0 chr1 116670956 116671192 -80524240 - B4A SINE B4 -43 249 2 2 1475 267 103 0 0 chr1 116671478 116671517 -80523915 + L1_Mur1 LINE L1 4823 4861 -1025 2 1475 2753 97 8 8 chr1 116671517 116671913 -80523519 + MTA_Mm LTR MaLR 1 396 0 2 1475 7244 112 6 5 chr1 116671913 116672291 -80523141 + MTA_Mm-int LTR MaLR 1 378 -720 2 1475 3574 31 0 0 chr1 116672291 116672713 -80522719 + L1Md_T LINE L1 6161 6582 0 2 1475 7244 112 6 5 chr1 116672713 116673431 -80522001 + MTA_Mm-int LTR MaLR 379 1098 0 2 1475 815 92 8 8 chr1 116673431 116673551 -80521881 + MTA_Mm LTR MaLR 1 120 -276 2 1475 2359 102 91 0 chr1 116673551 116673913 -80521519 + Lx3_Mus LINE L1 6607 7001 -8 2 1475 548 376 49 29 chr1 116673954 116674403 -80521029 + Lx8 LINE L1 6241 6698 -775 2 1475 21 36 0 0 chr1 116675081 116675109 -80520323 + AT_rich Low_complexity Low_complexity 1 28 0 2 1475 217 122 48 24 chr1 116675156 116675198 -80520234 + CT-rich Low_complexity Low_complexity 6 48 0 2 1475 1398 22 0 17 chr1 116675198 116675379 -80520053 + (TTC)n Simple_repeat Simple_repeat 3 180 0 2 1475 650 365 39 39 chr1 116675431 116675495 -80519937 - B4A SINE B4 -4 288 217 2 1475 342 0 0 0 chr1 116675495 116675533 -80519899 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1475 650 365 39 39 chr1 116675533 116675750 -80519682 - B4A SINE B4 -76 216 8 2 1475 218 290 0 31 chr1 116676663 116676727 -80518705 - B3 SINE B2 -71 145 84 2 1475 546 341 58 6 chr1 116676782 116676956 -80518476 - B3A SINE B2 -8 190 8 2 1475 378 0 0 0 chr1 116677026 116677068 -80518364 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1475 519 100 0 0 chr1 116677069 116677139 -80518293 - RLTR14 LTR ERV1 -312 70 1 2 1475 186 167 0 0 chr1 116677198 116677234 -80518198 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1475 24 67 0 0 chr1 116677537 116677582 -80517850 + AT_rich Low_complexity Low_complexity 1 45 0 2 1475 1195 258 95 0 chr1 116677817 116678174 -80517258 + ORR1B1 LTR MaLR 4 394 0 2 1475 991 324 33 21 chr1 116678527 116678861 -80516571 + MTE2b LTR MaLR 1 338 -41 2 1475 3459 65 0 15 chr1 116679212 116679678 -80515754 + L1Md_F2 LINE L1 6124 6582 0 2 1475 505 301 32 0 chr1 116679686 116679842 -80515590 + MTE2b LTR MaLR 59 219 -160 2 1475 979 81 35 0 chr1 116681584 116681756 -80513676 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 2 1475 207 0 0 0 chr1 116681759 116681782 -80513650 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1475 306 349 101 11 chr1 116682391 116682579 -80512853 + B3 SINE B2 2 206 -10 2 1475 5447 226 14 5 chr1 116682857 116684367 -80511065 - Lx2B LINE L1 -126 6874 5351 2 1475 1274 149 7 5 chr1 116684367 116684594 -80510838 - ORR1A2 LTR MaLR 0 367 128 2 1475 29990 96 18 13 chr1 116684594 116688236 -80507196 + L1Md_F2 LINE L1 583 4240 -1643 3 1475 4011 51 0 0 chr1 116688236 116688725 -80506707 + L1Md_T LINE L1 6093 6581 -1 3 1475 29990 93 5 15 chr1 116688725 116689740 -80505692 + L1Md_F2 LINE L1 4241 5233 -650 3 1475 549 0 0 0 chr1 116689740 116689801 -80505631 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1475 29990 93 5 15 chr1 116689801 116690136 -80505296 + L1Md_F2 LINE L1 5234 5585 -298 3 1475 7145 85 4 7 chr1 116690137 116691135 -80504297 + L1Md_F2 LINE L1 5588 6582 0 3 1475 843 157 7 0 chr1 116691140 116691280 -80504152 - ORR1A2 LTR MaLR -186 141 1 2 1475 8531 180 40 16 chr1 116691280 116692257 -80503175 - Lx2B LINE L1 -531 5346 4343 2 1475 2291 122 64 84 chr1 116692257 116692742 -80502690 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1475 8531 180 40 16 chr1 116692742 116693587 -80501845 - Lx2B LINE L1 -1535 4342 3482 2 1475 399 41 0 0 chr1 116693588 116693637 -80501795 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 3 1475 736 168 19 6 chr1 116693638 116693800 -80501632 + CT-rich Low_complexity Low_complexity 1 164 0 3 1475 914 88 15 0 chr1 116693801 116693938 -80501494 + (TTCTC)n Simple_repeat Simple_repeat 4 142 0 3 1475 4013 229 66 6 chr1 116693942 116695265 -80500167 - Lx2B LINE L1 -3621 2265 864 2 1475 250 333 83 0 chr1 116695750 116695870 -80499562 - Tigger7 DNA MER2_type -20 2471 2342 3 1475 256 272 89 68 chr1 116695960 116696106 -80499326 - B4A SINE B4 -18 274 126 3 1475 242 390 9 9 chr1 116696218 116696324 -80499108 + RSINE1 SINE B4 10 115 -50 3 1475 965 252 102 104 chr1 116696325 116696853 -80498579 - RLTR11A LTR ERVK -1 527 1 3 1475 357 272 73 28 chr1 116696855 116697033 -80498399 - MYSERV-int LTR ERVK -2 6548 6363 3 1475 7559 70 5 2 chr1 116697100 116698341 -80497091 - L1Md_F2 LINE L1 -12 6570 5326 3 1475 1786 74 0 4 chr1 116698340 116698583 -80496849 + L1_Mm LINE L1 3987 4228 -1655 3 1475 1416 218 21 18 chr1 116698584 116698911 -80496521 - MYSERV16_I-int LTR ERVK -256 2070 1743 3 1475 39086 63 3 23 chr1 116698911 116705975 -80489457 - L1Md_T LINE L1 0 6582 99 3 1475 2321 218 47 12 chr1 116705976 116706659 -80488773 - MYSERV16_I-int LTR ERVK -567 1759 1053 3 1475 289 264 141 14 chr1 116706672 116706814 -80488618 - RMER4A LTR ERVK -27 439 280 3 1475 2013 234 8 63 chr1 116706814 116706942 -80488490 - MYSERV16_I-int LTR ERVK -1426 900 794 3 1475 225 65 0 0 chr1 116706942 116706973 -80488459 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1475 2013 234 8 63 chr1 116706973 116707443 -80487989 - MYSERV16_I-int LTR ERVK -1533 793 335 3 1475 1114 59 0 0 chr1 116707555 116707691 -80487741 + B1_Mus2 SINE Alu 2 137 -10 3 1475 279 0 0 0 chr1 116707691 116707722 -80487710 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 1475 1034 216 54 0 chr1 116708491 116708732 -80486700 + RLTR28 LTR ERVL 1 254 -270 3 1475 2075 117 269 0 chr1 116709832 116710163 -80485269 - RLTR9B LTR ERVK 0 420 1 3 1475 351 371 112 28 chr1 116710288 116710718 -80484714 + MLT2B3 LTR ERVL 4 469 -85 3 1475 1398 202 114 18 chr1 116710861 116711204 -80484228 + ORR1C1 LTR MaLR 3 378 0 3 1475 21 36 0 0 chr1 116711434 116711462 -80483970 + AT_rich Low_complexity Low_complexity 1 28 0 3 1475 257 260 0 0 chr1 116711808 116711881 -80483551 + L1MA7 LINE L1 5852 5924 -367 3 1475 410 269 37 28 chr1 116712066 116712173 -80483259 - ID_B1 SINE B4 -1 223 116 3 1475 281 271 229 33 chr1 116712173 116712188 -80483244 - B1F SINE Alu -1 148 3 3 1475 180 111 0 0 chr1 116713132 116713159 -80482273 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1475 207 229 0 0 chr1 116713540 116713601 -80481831 + GA-rich Low_complexity Low_complexity 2 62 0 3 1475 319 276 46 0 chr1 116713769 116713856 -80481576 - ID_B1 SINE B4 -8 216 126 3 1475 384 59 0 0 chr1 116714097 116714148 -80481284 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1475 231 61 0 0 chr1 116714618 116714651 -80480781 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 3 1475 1183 62 0 0 chr1 116714792 116714938 -80480494 + B1_Mus1 SINE Alu 3 148 0 3 1475 216 0 0 0 chr1 116714938 116714962 -80480470 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1475 552 15 0 0 chr1 116715344 116715409 -80480023 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1475 649 61 43 9 chr1 116715517 116715633 -80479799 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 3 1475 304 255 39 78 chr1 116716260 116716362 -80479070 - MTEa LTR MaLR -281 98 1 3 1475 525 247 120 10 chr1 116716959 116717151 -80478281 + L1M2 LINE L1 5277 5489 -823 3 1475 925 260 58 36 chr1 116717511 116718174 -80477258 + L1_Mur2 LINE L1 904 1534 -4343 3 1475 253 351 25 62 chr1 116718173 116718416 -80477016 - L1M2 LINE L1 -413 5887 5654 3 1475 2697 222 45 45 chr1 116718476 116718976 -80476456 + L1_Mur2 LINE L1 1549 2060 -3817 3 1475 549 0 0 0 chr1 116718976 116719037 -80476395 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1475 2697 222 45 45 chr1 116719037 116719399 -80476033 + L1_Mur2 LINE L1 2061 2411 -3466 3 1475 271 156 0 0 chr1 116719497 116719542 -80475890 + MusHAL1 LINE L1 1217 1261 -1451 3 1475 244 217 0 21 chr1 116719548 116719595 -80475837 + B1_Mur1 SINE Alu 63 108 -41 3 1475 21 36 0 0 chr1 116719596 116719624 -80475808 + AT_rich Low_complexity Low_complexity 1 28 0 3 1475 1093 214 0 5 chr1 116719638 116719831 -80475601 + RMER13A LTR ERVK 1 192 -668 3 1475 536 67 22 11 chr1 116720444 116720535 -80474897 - L1Md_F3 LINE L1 -12 6572 6481 3 1475 556 275 107 36 chr1 116721050 116721332 -80474100 - Lx7 LINE L1 -365 5935 5604 3 1475 24 32 0 0 chr1 116722315 116722346 -80473086 + AT_rich Low_complexity Low_complexity 1 31 0 3 1475 628 323 12 30 chr1 116722369 116722535 -80472897 - RSINE1 SINE B4 0 165 3 3 1475 765 325 69 20 chr1 116722768 116723072 -80472360 + ORR1E LTR MaLR 15 333 -26 3 1475 1192 49 7 0 chr1 116723183 116723327 -80472105 + B1_Mm SINE Alu 3 147 0 3 1475 246 32 0 0 chr1 116723330 116723361 -80472071 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1475 649 262 96 0 chr1 116723393 116723580 -80471852 + B3 SINE B2 1 205 -11 3 1475 1897 102 37 7 chr1 116724345 116724641 -80470791 - L1_Mus1 LINE L1 0 6567 6263 3 1475 236 239 60 0 chr1 116724833 116724900 -80470532 + B4 SINE B4 1 71 -221 3 1475 480 35 0 0 chr1 116724936 116724994 -80470438 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1475 1263 51 6 11 chr1 116724995 116725173 -80470259 + (GAA)n Simple_repeat Simple_repeat 2 178 0 3 1475 657 69 0 0 chr1 116725173 116725260 -80470172 + (GGA)n Simple_repeat Simple_repeat 2 88 0 3 1475 1312 56 11 0 chr1 116725261 116725439 -80469993 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1475 348 83 0 0 chr1 116725454 116725502 -80469930 + (CAG)n Simple_repeat Simple_repeat 2 49 0 3 1475 1942 118 52 62 chr1 116726552 116726915 -80468517 + Lx LINE L1 6272 6632 -22 3 1475 537 58 0 0 chr1 116726915 116726984 -80468448 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 3 1475 1942 118 52 62 chr1 116726984 116727007 -80468425 + Lx LINE L1 6633 6654 0 3 1475 2680 39 15 0 chr1 116727061 116727398 -80468034 + MTA_Mm LTR MaLR 55 396 0 3 1475 7060 82 16 75 chr1 116727398 116728564 -80466868 + MTA_Mm-int LTR MaLR 1 1098 0 3 1475 3308 43 2 0 chr1 116728564 116728959 -80466473 + MTA_Mm LTR MaLR 1 396 0 3 1475 247 221 29 29 chr1 116729246 116729316 -80466116 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 3 1475 243 211 52 62 chr1 116729497 116729593 -80465839 - L1MA4A LINE L1 -3 6300 6206 3 1475 294 200 10 118 chr1 116729609 116729711 -80465721 - Lx3_Mus LINE L1 -8 7001 6911 3 1475 2869 99 22 5 chr1 116729709 116730206 -80465226 + Lx3A LINE L1 5469 5966 -1015 3 1475 23 0 0 0 chr1 116730493 116730516 -80464916 + AT_rich Low_complexity Low_complexity 1 23 0 3 1475 372 358 62 9 chr1 116731048 116731246 -80464186 - B3A SINE B2 -10 206 4 3 1475 641 292 92 0 chr1 116731426 116731621 -80463811 + B3 SINE B2 4 216 0 3 1475 387 308 83 12 chr1 116732491 116732680 -80462752 - MIRb SINE MIR -32 236 39 3 1475 25 0 0 0 chr1 116732945 116732970 -80462462 + AT_rich Low_complexity Low_complexity 1 25 0 3 1475 3698 243 12 13 chr1 116732970 116734019 -80461413 - Lx4B LINE L1 0 7058 5910 3 1475 288 0 0 0 chr1 116734019 116734051 -80461381 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1475 950 100 0 0 chr1 116734052 116734182 -80461250 - B1_Mus2 SINE Alu -12 135 6 3 1475 2522 190 24 6 chr1 116734188 116734773 -80460659 - Lx4B LINE L1 -1078 5922 5321 3 1475 564 30 0 0 chr1 116734777 116734843 -80460589 - Lx LINE L1 -918 5736 5671 3 1475 4768 167 13 12 chr1 116734843 116735747 -80459685 - Lx4B LINE L1 -1218 4659 3755 3 1475 454 292 158 43 chr1 116735748 116736002 -80459430 + RLTR20D LTR ERVK 1 283 -285 3 1475 411 336 15 15 chr1 116735990 116736059 -80459373 + RLTR20D LTR ERVK 420 489 -89 3 1475 387 0 0 0 chr1 116736059 116736102 -80459330 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1475 411 336 15 15 chr1 116736102 116736162 -80459270 + RLTR20D LTR ERVK 490 548 -30 3 1475 2494 193 16 20 chr1 116736203 116736758 -80458674 - L1_Mur1 LINE L1 -2117 3760 3208 3 1475 28 0 0 0 chr1 116736762 116736790 -80458642 + AT_rich Low_complexity Low_complexity 1 28 0 3 1475 7737 130 36 21 chr1 116736792 116738517 -80456915 - Lx3A LINE L1 -7 6974 5221 3 1475 2032 108 9 3 chr1 116738517 116738851 -80456581 + L1_Mur1 LINE L1 3040 3375 -2511 3 1475 8566 146 46 57 chr1 116738848 116741293 -80454139 - L1_Mur1 LINE L1 -3064 2822 23 3 1475 2413 195 175 122 chr1 116741292 116742268 -80453164 - L1_Mur2 LINE L1 -2651 3226 2199 3 1475 21 36 0 0 chr1 116742790 116742818 -80452614 + AT_rich Low_complexity Low_complexity 1 28 0 3 1475 216 0 0 0 chr1 116742974 116742998 -80452434 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1475 594 63 0 0 chr1 116744036 116744115 -80451317 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1475 297 0 0 0 chr1 116744282 116744315 -80451117 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1475 1069 73 0 0 chr1 116744315 116744451 -80450981 - B1_Mus1 SINE Alu -12 136 1 3 1475 406 414 54 0 chr1 116744470 116744673 -80450759 - B4A SINE B4 -74 218 5 3 1475 459 341 78 37 chr1 116745479 116745747 -80449685 + B4A SINE B4 1 279 -13 3 1475 1312 173 79 32 chr1 116745894 116746079 -80449353 + RMER17B LTR ERVK 3 202 -756 3 1475 1966 196 28 56 chr1 116746079 116746511 -80448921 - RLTR9B2 LTR ERVK 0 420 1 3 1475 1312 173 79 32 chr1 116746511 116746641 -80448791 + RMER17B LTR ERVK 203 333 -625 3 1475 1207 263 71 3 chr1 116746641 116746992 -80448440 - Lx9 LINE L1 -656 6988 6614 3 1475 252 356 0 65 chr1 116747103 116747211 -80448221 + Tigger1 DNA MER2_type 1 101 -2317 3 1475 611 94 10 0 chr1 116747631 116747727 -80447705 + (TAAA)n Simple_repeat Simple_repeat 3 99 0 3 1475 243 0 0 0 chr1 116748533 116748560 -80446872 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1475 425 279 44 28 chr1 116748565 116748697 -80446735 + B3A SINE B2 2 123 -72 3 1475 297 0 0 0 chr1 116748697 116748730 -80446702 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1475 332 311 42 83 chr1 116748730 116748790 -80446642 + B2_Mm2 SINE B2 124 186 -9 3 1475 23 33 0 0 chr1 116748956 116748986 -80446446 + AT_rich Low_complexity Low_complexity 1 30 0 3 1475 21 0 0 0 chr1 116749406 116749427 -80446005 + AT_rich Low_complexity Low_complexity 1 21 0 3 1475 321 333 68 27 chr1 116750082 116750230 -80445202 - RMER15 LTR ERVL -14 561 408 4 1475 439 57 0 0 chr1 116750230 116750283 -80445149 + L1Md_F3 LINE L1 5534 5586 -297 4 1475 8308 34 2 1 chr1 116750284 116751279 -80444153 + L1Md_F3 LINE L1 5588 6583 -1 4 1475 367 329 20 27 chr1 116751296 116751446 -80443986 - RMER15 LTR ERVL -152 423 275 4 1475 279 279 38 168 chr1 116751440 116751625 -80443807 - RMER15 LTR ERVL -414 161 1 4 1475 222 91 0 0 chr1 116751785 116751818 -80443614 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1475 21 0 0 0 chr1 116752000 116752021 -80443411 + AT_rich Low_complexity Low_complexity 1 21 0 4 1475 508 326 26 39 chr1 116752036 116752189 -80443243 + RSINE1 SINE B4 11 161 -4 4 1475 25 51 0 0 chr1 116752189 116752228 -80443204 + AT_rich Low_complexity Low_complexity 1 39 0 4 1475 614 331 46 18 chr1 116752340 116752620 -80442812 + B4A SINE B4 5 292 0 4 1475 960 111 0 0 chr1 116753205 116753385 -80442047 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1475 465 19 0 0 chr1 116753386 116753440 -80441992 + (CAA)n Simple_repeat Simple_repeat 2 55 0 4 1475 981 213 41 9 chr1 116753823 116754041 -80441391 + RLTR40 LTR ERVK 4 228 -589 4 1475 1101 212 6 89 chr1 116754036 116754352 -80441080 + RLTR40 LTR ERVK 470 759 -58 4 1475 8091 35 1 7 chr1 116754472 116755869 -80439563 - L1Md_F2 LINE L1 -15 6567 5181 4 1475 383 372 31 5 chr1 116756094 116756286 -80439146 - RMER15 LTR ERVL -12 563 367 4 1475 24 0 0 0 chr1 116756396 116756420 -80439012 + AT_rich Low_complexity Low_complexity 1 24 0 4 1475 352 351 78 10 chr1 116757289 116757482 -80437950 - Tigger15a DNA TcMar -7 708 503 4 1475 274 364 71 0 chr1 116758244 116758343 -80437089 + B4 SINE B4 1 106 -186 4 1475 216 158 0 0 chr1 116758343 116758381 -80437051 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 4 1475 423 340 57 13 chr1 116758411 116758569 -80436863 + B4A SINE B4 101 265 -27 4 1475 288 77 0 0 chr1 116760070 116760109 -80435323 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1475 549 364 5 49 chr1 116760186 116760391 -80435041 + B4 SINE B4 1 196 -96 4 1475 212 191 63 0 chr1 116760507 116760570 -80434862 + (CATAA)n Simple_repeat Simple_repeat 4 70 0 4 1475 252 241 0 18 chr1 116761417 116761472 -80433960 - B4A SINE B4 -2 290 237 4 1475 786 325 114 21 chr1 116761489 116761735 -80433697 - L1M4 LINE L1 -2634 3512 3252 4 1475 1731 184 6 58 chr1 116761735 116762082 -80433350 - ORR1A4 LTR MaLR 0 329 1 4 1475 786 325 114 21 chr1 116762082 116762516 -80432916 - L1M4 LINE L1 -2895 3251 2768 4 1475 4148 146 93 71 chr1 116762668 116763027 -80432405 + RMER17A2 LTR ERVK 3 403 -503 4 1475 288 0 0 0 chr1 116763027 116763059 -80432373 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1475 4148 146 93 71 chr1 116763059 116763584 -80431848 + RMER17A2 LTR ERVK 404 905 -1 4 1475 297 277 103 55 chr1 116764339 116764390 -80431042 + RMER15 LTR ERVL 356 421 -154 4 1475 3230 174 3 67 chr1 116764390 116765032 -80430400 - MT2B LTR ERVL 0 601 1 4 1475 297 277 103 55 chr1 116765032 116765125 -80430307 + RMER15 LTR ERVL 422 507 -68 4 1475 271 287 19 38 chr1 116765210 116765315 -80430117 - ORR1E LTR MaLR -26 353 251 4 1475 527 347 57 47 chr1 116765480 116765798 -80429634 + RLTR26 LTR ERVK 97 417 -225 4 1475 665 320 11 6 chr1 116766045 116766224 -80429208 - ORR1E LTR MaLR -170 189 10 4 1475 522 0 0 0 chr1 116766909 116766967 -80428465 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1475 1849 270 59 46 chr1 116766967 116767971 -80427461 - RMER1B Other Other -22 1044 9 4 1475 492 323 56 0 chr1 116768119 116768280 -80427152 - B3A SINE B2 -26 172 3 4 1475 7273 94 3 1 chr1 116768693 116769997 -80425435 + L1_Mus1 LINE L1 5260 6567 0 4 1475 198 0 0 0 chr1 116770023 116770045 -80425387 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1475 300 309 145 102 chr1 116771361 116771411 -80424021 - B4A SINE B4 -18 274 216 4 1475 8935 6 0 0 chr1 116771411 116772404 -80423028 + L1Md_T LINE L1 5590 6582 0 4 1475 300 315 131 91 chr1 116772404 116772534 -80422898 - B4A SINE B4 -77 215 87 4 1475 447 373 54 5 chr1 116772747 116772933 -80422499 + B3A SINE B2 2 196 -2 4 1475 22 35 0 0 chr1 116773975 116774004 -80421428 + AT_rich Low_complexity Low_complexity 1 29 0 4 1475 530 29 15 0 chr1 116774146 116774214 -80421218 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 4 1475 318 87 0 0 chr1 116775012 116775058 -80420374 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1475 460 276 126 78 chr1 116775156 116775514 -80419918 - MTE2a LTR MaLR 0 379 5 4 1475 306 0 0 0 chr1 116776103 116776137 -80419295 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1475 375 60 0 0 chr1 116776308 116776358 -80419074 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1475 604 327 98 77 chr1 116776378 116776663 -80418769 - B4 SINE B4 0 292 2 4 1475 243 352 0 0 chr1 116777675 116777763 -80417669 + RMER15 LTR ERVL 371 458 -117 4 1475 320 59 0 19 chr1 116777796 116777848 -80417584 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1475 22 80 0 0 chr1 116778149 116778199 -80417233 + AT_rich Low_complexity Low_complexity 1 50 0 4 1475 635 322 58 33 chr1 116778814 116779090 -80416342 - B4A SINE B4 -2 290 8 4 1475 521 340 0 0 chr1 116779075 116779234 -80416198 - MTEa LTR MaLR -220 159 1 4 1475 21 0 0 0 chr1 116779256 116779277 -80416155 + AT_rich Low_complexity Low_complexity 1 21 0 4 1475 2966 215 103 105 chr1 116779732 116780762 -80414670 + RLTR25B LTR ERVK 1 1028 0 4 1475 944 229 14 7 chr1 116780894 116781285 -80414147 + L1_Mur2 LINE L1 1083 1474 -4403 4 1475 291 142 21 210 chr1 116781283 116781341 -80414091 + L1_Mur2 LINE L1 2269 2315 -3562 4 1475 2488 136 78 29 chr1 116781341 116781789 -80413643 + Lx LINE L1 6167 6636 -18 4 1475 291 142 21 210 chr1 116781789 116781873 -80413559 + L1_Mur2 LINE L1 2316 2384 -3493 4 1475 6857 196 76 16 chr1 116781886 116783549 -80411883 + L1_Mur2 LINE L1 2690 4452 -1425 4 1475 1906 209 26 35 chr1 116783554 116784011 -80411421 + L1_Mur2 LINE L1 4789 5241 -636 4 1475 1135 92 23 11 chr1 116784009 116784184 -80411248 + Lx LINE L1 5818 5994 -660 4 1475 588 333 20 31 chr1 116784247 116784442 -80410990 + B3 SINE B2 1 193 -23 4 1475 583 252 47 0 chr1 116784443 116784570 -80410862 + ETnERV2-int LTR ERVK 7070 7202 -204 4 184 423 250 30 15 chr1 116785116 116785250 -80410182 + RMER16-int LTR ERVK 169 304 -6940 4 1476 2057 178 148 35 chr1 116785469 116785976 -80409456 + RMER16-int LTR ERVK 256 819 -4587 4 1476 547 165 128 0 chr1 116785981 116786090 -80409342 + RMER16-int LTR ERVK 938 1060 -5077 4 1476 1051 248 54 44 chr1 116786103 116786398 -80409034 + RLTR45-int LTR ERVK 2454 2751 -4655 4 1476 4173 117 20 55 chr1 116786426 116787156 -80408276 + RLTR45-int LTR ERVK 3567 4271 -3135 4 1476 4767 161 83 103 chr1 116787161 116788382 -80407050 + RLTR45-int LTR ERVK 4876 6071 -1173 4 1476 843 278 32 12 chr1 116788384 116788754 -80406678 + RLTR45-int LTR ERVK 7506 7848 -369 4 1476 3705 159 20 3 chr1 116788766 116789359 -80406073 + ETnERV2-int LTR ERVK 6491 7093 -313 4 1476 501 296 104 38 chr1 116789879 116790062 -80405370 - MTE2a LTR MaLR 0 379 185 4 1476 1054 110 0 0 chr1 116790121 116790267 -80405165 + B1_Mus2 SINE Alu 2 147 0 4 1476 225 0 0 0 chr1 116790267 116790292 -80405140 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1476 235 302 115 0 chr1 116790347 116790443 -80404989 - MTE2a LTR MaLR -312 107 1 4 1476 265 250 39 39 chr1 116790877 116790981 -80404451 + L1MC LINE L1 2332 2435 -3711 4 1476 569 331 14 0 chr1 116791790 116791935 -80403497 - ID_B1 SINE B4 -1 223 77 4 1476 32 43 0 0 chr1 116792016 116792062 -80403370 + AT_rich Low_complexity Low_complexity 1 46 0 4 1476 446 61 15 0 chr1 116792102 116792168 -80403264 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 1476 495 338 127 0 chr1 116792170 116792407 -80403025 + MTE2a LTR MaLR 14 280 -99 4 1476 2214 243 63 19 chr1 116792407 116792943 -80402489 - RLTR20B2 LTR ERVK 0 560 1 4 1476 269 321 0 0 chr1 116792943 116793025 -80402407 + MTE2a LTR MaLR 275 356 -23 4 1476 284 297 36 7 chr1 116793069 116793208 -80402224 + (CATA)n Simple_repeat Simple_repeat 4 146 0 4 1476 1447 254 22 175 chr1 116793241 116793961 -80401471 + RMER19C LTR ERVK 1 610 -1 4 1476 455 0 0 18 chr1 116793996 116794052 -80401380 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 4 1476 804 75 0 0 chr1 116794052 116794159 -80401273 - B1_Mm SINE Alu -13 134 28 4 1476 355 326 71 14 chr1 116794434 116794574 -80400858 + MLT2B1 LTR ERVL 414 561 -6 4 1476 477 34 0 0 chr1 116795140 116795199 -80400233 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1476 231 309 0 14 chr1 116795217 116795286 -80400146 + B4A SINE B4 225 292 0 4 1476 22 56 0 0 chr1 116795685 116795721 -80399711 + AT_rich Low_complexity Low_complexity 1 36 0 4 1476 2816 241 53 12 chr1 116795819 116796619 -80398813 - Lx5 LINE L1 -153 6905 6076 4 1476 6565 184 192 23 chr1 116796627 116798695 -80396737 - Lx5 LINE L1 -1112 5938 3461 4 1476 10710 69 5 9 chr1 116798851 116800990 -80394442 - L1Md_F2 LINE L1 -1 6581 4451 4 1476 2079 221 79 8 chr1 116800974 116801887 -80393545 - Lx5 LINE L1 -4151 1726 746 4 1476 3285 226 78 42 chr1 116802183 116803056 -80392376 + RMER13B LTR ERVK 5 908 0 4 1476 404 358 129 20 chr1 116803114 116803176 -80392256 - B4 SINE B4 -12 280 222 4 1476 799 45 27 0 chr1 116803176 116803287 -80392145 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 4 1476 404 358 129 20 chr1 116803287 116803472 -80391960 - B4 SINE B4 -71 221 6 4 1476 23 0 0 0 chr1 116803873 116803896 -80391536 + AT_rich Low_complexity Low_complexity 1 23 0 4 1476 650 325 31 10 chr1 116804312 116804505 -80390927 + ID_B1 SINE B4 24 220 -4 4 1476 229 280 0 26 chr1 116804506 116804583 -80390849 + GA-rich Low_complexity Low_complexity 1 75 0 4 1476 688 49 91 68 chr1 116804674 116804806 -80390626 + L1_Mus3 LINE L1 6498 6632 -6 4 1476 21 57 0 0 chr1 116804807 116804842 -80390590 + AT_rich Low_complexity Low_complexity 1 35 0 4 1476 297 0 0 0 chr1 116804858 116804891 -80390541 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1476 1267 91 17 0 chr1 116805497 116805672 -80389760 + B2_Mm2 SINE B2 1 178 -17 4 1476 312 352 23 31 chr1 116806368 116806497 -80388935 - RSINE1 SINE B4 -36 129 2 4 1476 2995 62 10 0 chr1 116807744 116808128 -80387304 - RLTR10 LTR ERVK -2 388 1 4 1476 491 310 32 71 chr1 116808304 116808585 -80386847 - B4A SINE B4 -18 274 5 4 1476 248 238 72 36 chr1 116808599 116808682 -80386750 + MTC LTR MaLR 18 103 -318 4 1476 1321 200 8 15 chr1 116808682 116808946 -80386486 - Lx6 LINE L1 -678 6782 6521 4 1476 837 205 3 7 chr1 116808951 116809134 -80386298 + ORR1B1 LTR MaLR 6 180 -198 4 1476 366 225 0 24 chr1 116809134 116809206 -80386226 + Lx7 LINE L1 6827 6898 -798 4 1476 758 41 10 0 chr1 116809206 116809304 -80386128 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 4 1476 366 230 12 79 chr1 116809304 116809324 -80386108 + Lx7 LINE L1 6888 6908 -552 4 1476 489 278 21 32 chr1 116809331 116809525 -80385907 + Lx6 LINE L1 6850 7037 -659 4 1476 760 272 144 11 chr1 116809514 116809785 -80385647 + Lx6 LINE L1 7154 7460 0 4 1476 605 262 32 30 chr1 116809826 116810041 -80385391 + ORR1E LTR MaLR 1 218 -152 4 1476 277 269 32 21 chr1 116810060 116810155 -80385277 + ORR1E LTR MaLR 275 370 0 4 1476 618 311 123 28 chr1 116810155 116810440 -80384992 + MTD LTR MaLR 106 417 -2 4 1476 218 300 27 41 chr1 116810609 116810682 -80384750 + B4 SINE B4 1 72 -220 4 1476 276 211 0 17 chr1 116810777 116810835 -80384597 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 4 1476 1680 256 62 24 chr1 116811635 116812171 -80383261 + Lx9 LINE L1 6974 7529 -115 5 1476 204 40 0 0 chr1 116812203 116812228 -80383204 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1476 331 250 14 14 chr1 116812605 116812678 -80382754 + RSINE1 SINE B4 34 106 -59 5 1476 249 33 0 0 chr1 116812716 116812746 -80382686 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1476 1042 321 7 36 chr1 116812969 116813389 -80382043 + Lx7 LINE L1 6943 7350 -346 4 1476 381 340 269 14 chr1 116815381 116815678 -80379754 - ORR1E LTR MaLR -6 373 1 5 1476 682 165 0 80 chr1 116815796 116815934 -80379498 + B1_Mur3 SINE Alu 22 148 -1 5 1476 200 122 41 0 chr1 116815940 116815989 -80379443 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1476 596 329 118 25 chr1 116815991 116816517 -80378915 - MTE-int LTR MaLR -566 1014 440 5 1476 396 0 0 0 chr1 116816517 116816561 -80378871 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1476 208 64 62 21 chr1 116816561 116816609 -80378823 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 5 1476 977 108 14 0 chr1 116816611 116816750 -80378682 - B1_Mus1 SINE Alu -7 141 1 5 1476 1128 189 17 8 chr1 116816765 116817000 -80378432 - Lx3A LINE L1 0 6981 6745 5 1476 268 238 23 23 chr1 116818084 116818170 -80377262 - L1MD LINE L1 -1919 4227 4142 5 1476 570 241 168 30 chr1 116818357 116818554 -80376878 - RLTR14 LTR ERV1 -146 236 13 5 1476 401 264 61 27 chr1 116818621 116818769 -80376663 + Lx5 LINE L1 6895 7047 -3 5 1476 248 319 22 0 chr1 116818939 116819030 -80376402 + Lx8 LINE L1 6891 6983 -490 5 1476 956 131 28 22 chr1 116819033 116819213 -80376219 + L1_Mus3 LINE L1 6458 6638 0 5 1476 26 50 0 0 chr1 116819245 116819285 -80376147 + AT_rich Low_complexity Low_complexity 1 40 0 5 1476 230 294 44 66 chr1 116819476 116819567 -80375865 - MTC-int LTR MaLR -601 657 569 5 1476 26 0 0 0 chr1 116819838 116819864 -80375568 + AT_rich Low_complexity Low_complexity 1 26 0 5 1476 2235 153 202 16 chr1 116819949 116820440 -80374992 + RLTR31A_Mm LTR ERVK 3 584 0 5 1476 1795 333 63 21 chr1 116820700 116821514 -80373918 + Lx8 LINE L1 6485 7332 -141 5 1476 1534 173 41 50 chr1 116822430 116822748 -80372684 + Lx4A LINE L1 5082 5399 -478 5 1476 234 0 0 0 chr1 116822748 116822774 -80372658 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1476 1534 173 41 50 chr1 116822774 116822795 -80372637 + Lx4A LINE L1 5400 5418 -459 5 1476 29503 113 8 20 chr1 116822794 116826282 -80369150 + L1_Mus1 LINE L1 217 3712 -2855 5 1476 767 65 0 44 chr1 116826282 116826395 -80369037 + B1_Mm SINE Alu 40 147 0 5 1476 29503 113 8 20 chr1 116826395 116829240 -80366192 + L1_Mus1 LINE L1 3713 6565 -2 5 1476 6893 212 22 6 chr1 116829250 116830488 -80364944 + Lx4A LINE L1 5405 6668 -390 5 1476 273 57 0 0 chr1 116830488 116830523 -80364909 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1476 6893 214 29 8 chr1 116830523 116830894 -80364538 + Lx4A LINE L1 6669 7055 -3 5 1476 639 26 0 0 chr1 116830922 116830999 -80364433 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 5 1476 573 15 0 0 chr1 116831521 116831587 -80363845 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 5 1476 2540 108 53 13 chr1 116831613 116832006 -80363426 - RLTR9E LTR ERVK 0 409 1 5 1476 471 340 50 0 chr1 116832143 116832284 -80363148 - RSINE1 SINE B4 -14 151 4 5 1476 446 339 16 62 chr1 116832413 116832605 -80362827 + B3A SINE B2 9 191 -7 5 1476 522 296 134 64 chr1 116833029 116833357 -80362075 - MT2A LTR ERVL 0 533 183 5 1476 2642 96 29 3 chr1 116833767 116834142 -80361290 - IAPEY_LTR LTR ERVK 0 385 1 5 1476 20636 72 2 6 chr1 116834142 116836862 -80358570 - IAPEy-int LTR ERVK 0 7513 4805 5 1476 1303 128 20 0 chr1 116836868 116837063 -80358369 - IAPLTR4_I LTR ERVK -413 1057 859 5 1476 2157 90 3 9 chr1 116837054 116837380 -80358052 - IAPEy-int LTR ERVK -6690 823 500 5 1476 329 314 10 0 chr1 116837380 116837482 -80357950 + Lx8 LINE L1 6857 6959 -514 5 1476 2313 179 33 48 chr1 116837482 116838003 -80357429 + RLTR31_Mm LTR ERVK 1 513 -48 5 1476 320 225 0 0 chr1 116838003 116838083 -80357349 - Lx6 LINE L1 -55 7405 7326 5 1476 665 347 14 35 chr1 116838100 116838384 -80357048 + Lx8 LINE L1 6955 7232 -241 5 1476 261 219 13 52 chr1 116838465 116838542 -80356890 + GA-rich Low_complexity Low_complexity 2 75 0 5 1476 876 85 7 28 chr1 116838786 116838931 -80356501 + L1Md_F2 LINE L1 6430 6571 -11 5 1476 7082 129 4 2 chr1 116838931 116840131 -80355301 + Lx LINE L1 5453 6651 -3 5 1476 366 23 0 0 chr1 116840331 116840374 -80355058 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1476 336 374 84 105 chr1 116840409 116840705 -80354727 - B4A SINE B4 0 292 3 5 1476 1512 295 15 29 chr1 116840830 116841284 -80354148 - Lx6 LINE L1 0 7460 7013 5 1476 1134 296 87 33 chr1 116841275 116841743 -80353689 + Lx6 LINE L1 6480 6985 -711 5 1476 952 156 0 11 chr1 116841856 116842038 -80353394 + CT-rich Low_complexity Low_complexity 1 180 0 5 1476 1136 229 172 12 chr1 116842046 116842372 -80353060 - Lx LINE L1 -2 7056 6679 5 1476 1187 228 107 0 chr1 116842369 116842658 -80352774 + Lx4A LINE L1 6376 6695 -363 5 1476 6232 146 30 1 chr1 116842670 116843702 -80351730 - Lx LINE L1 0 6654 5593 5 1476 240 59 0 0 chr1 116843864 116843898 -80351534 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5 1476 1315 108 16 0 chr1 116844833 116845018 -80350414 - B2_Mm2 SINE B2 -7 188 1 5 1476 246 301 0 64 chr1 116845018 116845038 -80350394 + RMER15 LTR ERVL 389 405 -170 5 1476 951 85 0 7 chr1 116845038 116845180 -80350252 - L1_Mus1 LINE L1 -1 6566 6426 5 1476 246 301 0 64 chr1 116845180 116845237 -80350195 + RMER15 LTR ERVL 406 461 -114 5 1476 374 342 458 11 chr1 116846370 116846553 -80348879 - B4 SINE B4 -1 291 27 5 1476 22 35 0 0 chr1 116846576 116846605 -80348827 + AT_rich Low_complexity Low_complexity 1 29 0 5 1476 403 343 59 63 chr1 116846675 116846794 -80348638 + MTE2a LTR MaLR 86 201 -178 5 1476 180 111 0 0 chr1 116846794 116846821 -80348611 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1476 403 343 59 63 chr1 116846821 116846987 -80348445 + MTE2a LTR MaLR 202 370 -9 5 1476 342 0 0 0 chr1 116847925 116847963 -80347469 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1476 687 295 0 35 chr1 116848129 116848301 -80347131 - B4 SINE B4 -64 228 63 5 1476 459 0 0 0 chr1 116848395 116848446 -80346986 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1476 4473 199 65 16 chr1 116848770 116849931 -80345501 - L1_Mur1 LINE L1 -1947 3939 2722 5 1476 6388 180 27 21 chr1 116849933 116851285 -80344147 + L1_Mur2 LINE L1 4293 5652 -225 5 1476 23 54 0 0 chr1 116851659 116851696 -80343736 + AT_rich Low_complexity Low_complexity 1 37 0 5 1476 537 58 0 0 chr1 116851836 116851905 -80343527 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1476 187 39 55 55 chr1 116852290 116852345 -80343087 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 5 1476 879 79 55 0 chr1 116852345 116852472 -80342960 - B1_Mus1 SINE Alu 0 148 15 5 1476 2208 121 26 8 chr1 116852647 116852998 -80342434 + L1_Mus4 LINE L1 6236 6592 -44 5 1476 226 323 139 20 chr1 116854213 116854314 -80341118 + B4A SINE B4 125 237 -55 5 1476 378 0 0 0 chr1 116854477 116854519 -80340913 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1476 370 348 72 22 chr1 116854527 116854665 -80340767 - RSINE1 SINE B4 -19 146 2 5 1476 1656 101 63 0 chr1 116854665 116854903 -80340529 - L1Md_F2 LINE L1 -380 6202 5950 5 1476 994 87 0 20 chr1 116854904 116855056 -80340376 + L1Md_F2 LINE L1 6423 6571 -11 5 1476 326 61 20 0 chr1 116855066 116855115 -80340317 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 1476 227 200 0 0 chr1 116855651 116855701 -80339731 + A-rich Low_complexity Low_complexity 1 50 0 5 1476 396 0 0 0 chr1 116855712 116855756 -80339676 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1476 878 252 0 5 chr1 116855769 116855972 -80339460 + RLTR28 LTR ERVL 133 334 -190 5 1476 600 217 29 7 chr1 116855978 116856117 -80339315 + L1VL4 LINE L1 201 342 -5960 5 1476 487 203 31 101 chr1 116856118 116856277 -80339155 + RLTR28 LTR ERVL 356 503 -21 5 1476 215 216 0 38 chr1 116856332 116856385 -80339047 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 5 1476 325 311 90 43 chr1 116856870 116857058 -80338374 + MTC LTR MaLR 1 197 -224 5 1476 364 348 45 57 chr1 116857575 116857822 -80337610 + B4A SINE B4 41 284 -8 5 1476 474 65 0 0 chr1 116857862 116857924 -80337508 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1476 200 86 29 0 chr1 116857924 116857959 -80337473 + (CACAT)n Simple_repeat Simple_repeat 1 36 0 5 1476 1229 172 0 4 chr1 116858340 116858568 -80336864 - Lx2 LINE L1 -1 6996 6770 5 1476 888 179 10 42 chr1 116858568 116858760 -80336672 + B2_Mm2 SINE B2 4 189 -6 5 1476 356 376 95 60 chr1 116858800 116859149 -80336283 + MER54A LTR ERVL 284 711 -190 5 1476 895 329 122 8 chr1 116859301 116859770 -80335662 + MT2A LTR ERVL 3 524 -9 5 1476 323 354 150 0 chr1 116860076 116860223 -80335209 + B4 SINE B4 1 169 -123 5 1476 221 57 29 0 chr1 116860223 116860258 -80335174 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1476 399 56 0 0 chr1 116860813 116860867 -80334565 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1476 410 66 128 26 chr1 116860867 116860945 -80334487 - L1Md_F2 LINE L1 -67 6515 6430 5 1476 314 151 0 0 chr1 116860933 116860999 -80334433 + L1_Mus2 LINE L1 6008 6079 -503 5 1476 240 241 0 0 chr1 116861262 116861341 -80334091 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1476 21 36 0 0 chr1 116861726 116861754 -80333678 + AT_rich Low_complexity Low_complexity 1 28 0 5 1476 241 330 10 21 chr1 116861893 116861989 -80333443 + B3 SINE B2 16 110 -106 5 1476 198 0 0 0 chr1 116862776 116862798 -80332634 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1476 511 331 11 70 chr1 116863020 116863205 -80332227 + B3A SINE B2 25 198 0 5 1476 676 346 50 8 chr1 116864341 116864580 -80330852 - B4A SINE B4 -33 259 11 5 1476 24 0 0 0 chr1 116865032 116865056 -80330376 + AT_rich Low_complexity Low_complexity 1 24 0 5 1476 240 35 0 0 chr1 116865345 116865374 -80330058 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1476 189 195 0 0 chr1 116865492 116865533 -80329899 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 5 1476 432 123 0 0 chr1 116865569 116865642 -80329790 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1476 424 302 37 43 chr1 116865658 116865845 -80329587 - B3A SINE B2 -10 188 3 5 1476 244 280 158 13 chr1 116866171 116866247 -80329185 - MTE2a LTR MaLR -235 144 58 6 1476 678 330 70 62 chr1 116866614 116866969 -80328463 + MTEa LTR MaLR 18 375 -4 6 1476 446 360 65 90 chr1 116867797 116868087 -80327345 + B4A SINE B4 9 291 -1 6 1476 591 214 45 15 chr1 116868413 116868546 -80326886 - B1_Mus2 SINE Alu -2 145 9 6 1476 453 369 37 67 chr1 116868672 116868718 -80326714 + B4 SINE B4 3 50 -242 6 1476 3158 57 59 0 chr1 116868718 116869125 -80326307 - L1Md_F2 LINE L1 -13 6569 6139 6 1476 453 369 37 67 chr1 116869125 116869377 -80326055 + B4 SINE B4 51 292 0 6 1476 227 275 14 0 chr1 116869381 116869450 -80325982 + (CATA)n Simple_repeat Simple_repeat 3 72 0 6 1476 751 343 21 14 chr1 116869639 116869926 -80325506 + B4 SINE B4 4 292 0 6 1476 369 0 0 0 chr1 116870982 116871023 -80324409 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1476 509 320 41 71 chr1 116871064 116871661 -80323771 + L1MB3 LINE L1 5316 5896 -287 6 1476 454 306 104 39 chr1 116871721 116872058 -80323374 - L1M4b LINE L1 -2189 4817 4459 6 1476 310 323 116 42 chr1 116872172 116872576 -80322856 - L1M4b LINE L1 -2583 4423 3990 6 1476 452 310 122 27 chr1 116872579 116872841 -80322591 - B4A SINE B4 -2 290 4 6 1476 327 345 146 0 chr1 116873408 116873518 -80321914 - RSINE1 SINE B4 -9 156 31 6 1476 322 357 30 37 chr1 116873751 116873885 -80321547 + B1_Mur1 SINE Alu 13 145 -4 6 1476 509 274 68 58 chr1 116873900 116874090 -80321342 + B3A SINE B2 7 198 0 6 1476 323 218 62 31 chr1 116874112 116874240 -80321192 - L1M4b LINE L1 -4246 3088 2957 6 1476 1136 68 0 13 chr1 116874539 116874688 -80320744 + B1_Mm SINE Alu 1 147 0 6 1476 213 65 0 0 chr1 116874695 116874726 -80320706 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1476 1494 140 59 55 chr1 116874795 116875067 -80320365 - Lx LINE L1 -283 6371 6099 6 1476 293 0 27 0 chr1 116876487 116876524 -80318908 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 6 1476 598 307 86 24 chr1 116876645 116876855 -80318577 + B4 SINE B4 1 223 -69 6 1476 4443 215 121 134 chr1 116876975 116877303 -80318129 + L1_Mur2 LINE L1 3024 3329 -2548 6 1476 654 49 0 0 chr1 116877303 116877385 -80318047 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 6 1476 1033 59 0 87 chr1 116877385 116877534 -80317898 - B1_Mm SINE Alu -11 136 1 6 1476 1098 34 7 14 chr1 116877534 116877682 -80317750 + L1Md_F3 LINE L1 6421 6567 -17 6 1476 4443 215 121 134 chr1 116877682 116878766 -80316666 + L1_Mur2 LINE L1 3330 4340 -1537 6 1476 198 0 0 0 chr1 116878766 116878788 -80316644 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1476 4443 215 121 134 chr1 116878788 116879215 -80316217 + L1_Mur2 LINE L1 4341 4869 -1008 6 1476 1086 56 21 0 chr1 116879215 116879358 -80316074 - B1_Mus2 SINE Alu -1 146 1 6 1476 4443 215 121 134 chr1 116879358 116879640 -80315792 + L1_Mur2 LINE L1 4870 5117 -760 6 1476 6049 144 70 38 chr1 116879627 116881000 -80314432 + L1_Mur1 LINE L1 48 1468 -4418 6 1476 10827 16 0 0 chr1 116881071 116883042 -80312390 - L1Md_T LINE L1 0 6582 4612 6 1476 917 149 7 0 chr1 116883423 116883564 -80311868 + B1_Mus1 SINE Alu 2 143 -5 6 1476 30 0 0 0 chr1 116883566 116883596 -80311836 + AT_rich Low_complexity Low_complexity 1 30 0 6 1476 723 78 0 0 chr1 116884033 116884123 -80311309 + L1Md_F2 LINE L1 5497 5586 -297 6 1476 7112 77 23 2 chr1 116884124 116885098 -80310334 + L1Md_F2 LINE L1 5588 6581 -1 6 1476 3450 118 10 46 chr1 116885125 116885709 -80309723 - Lx3_Mus LINE L1 -486 6523 5961 6 1476 3232 119 24 2 chr1 116885709 116886206 -80309226 + Lx3_Mus LINE L1 6499 7006 -3 6 1476 2441 195 26 2 chr1 116886691 116887185 -80308247 - L1_Mm LINE L1 -376 5507 5002 6 1476 6345 63 12 6 chr1 116887197 116888060 -80307372 - RLTR13A3 LTR ERVK 0 978 111 6 1476 1726 153 20 0 chr1 116888076 116888370 -80307062 - L1_Mm LINE L1 -903 4980 4681 6 1476 6455 141 21 3 chr1 116888364 116889500 -80305932 + Lx LINE L1 5498 6654 0 6 1476 363 351 78 64 chr1 116889873 116890311 -80305121 - Lx8 LINE L1 -2 7471 7028 6 1476 296 318 77 37 chr1 116890625 116891129 -80304303 - L1M2 LINE L1 -510 5787 5259 6 1476 23 68 0 0 chr1 116891202 116891246 -80304186 + AT_rich Low_complexity Low_complexity 1 44 0 6 1476 241 186 0 0 chr1 116891409 116891452 -80303980 + A-rich Low_complexity Low_complexity 1 43 0 6 1476 253 218 18 0 chr1 116891567 116891622 -80303810 - Lx8 LINE L1 -224 7249 7194 6 1476 453 317 11 73 chr1 116892322 116892477 -80302955 + B3A SINE B2 11 155 -43 6 1476 867 20 0 0 chr1 116892477 116892578 -80302854 + (TC)n Simple_repeat Simple_repeat 1 101 0 6 1476 453 317 11 73 chr1 116892578 116892599 -80302833 + B3A SINE B2 156 176 -22 6 1476 198 143 0 0 chr1 116892943 116892978 -80302454 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1476 201 74 0 0 chr1 116892976 116893003 -80302429 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1476 606 118 0 0 chr1 116893476 116893569 -80301863 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1476 369 0 0 0 chr1 116894368 116894409 -80301023 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1476 412 208 50 0 chr1 116895313 116895414 -80300018 - Lx9 LINE L1 -7 7637 7532 6 1476 528 255 118 0 chr1 116895451 116895604 -80299828 - Lx9 LINE L1 -205 7439 7269 6 1476 461 263 83 88 chr1 116895765 116895969 -80299463 - B3 SINE B2 -2 214 12 6 1476 358 301 153 20 chr1 116896026 116896274 -80299158 - MER2 DNA MER2_type -10 335 55 6 1476 467 373 4 28 chr1 116896613 116896864 -80298568 - Lx5 LINE L1 -728 6322 6078 6 1476 779 327 65 85 chr1 116896882 116897473 -80297959 + Lx6 LINE L1 6478 7430 -30 6 1476 674 300 47 29 chr1 116897488 116897763 -80297669 + B4A SINE B4 3 282 -10 6 1476 557 312 103 22 chr1 116898814 116899223 -80296209 + L1MA4A LINE L1 5451 5892 -411 6 1476 22 0 0 0 chr1 116899499 116899521 -80295911 + AT_rich Low_complexity Low_complexity 1 22 0 6 1476 4651 55 0 34 chr1 116899548 116900167 -80295265 - L1Md_F2 LINE L1 -12 6570 5973 6 1476 393 304 18 18 chr1 116900752 116900866 -80294566 + MTE2a LTR MaLR 197 310 -69 6 1476 471 63 0 0 chr1 116900878 116900941 -80294491 + (A)n Simple_repeat Simple_repeat 1 63 0 6 1476 1583 183 12 68 chr1 116901117 116901457 -80293975 + ORR1A4 LTR MaLR 1 321 -8 6 1476 313 312 141 45 chr1 116902152 116902621 -80292811 + Arthur1 DNA Tip100 3366 3879 -68 6 1476 296 214 71 101 chr1 116902645 116902744 -80292688 - MTEb LTR MaLR -2 377 282 6 1476 23 54 0 0 chr1 116904354 116904391 -80291041 + AT_rich Low_complexity Low_complexity 1 37 0 6 1476 525 32 0 0 chr1 116904570 116904633 -80290799 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1476 22 56 0 0 chr1 116904724 116904760 -80290672 + AT_rich Low_complexity Low_complexity 1 36 0 6 1476 567 281 48 34 chr1 116905039 116905245 -80290187 + B3 SINE B2 7 215 -1 6 1476 2958 125 6 27 chr1 116905407 116905892 -80289540 - MT2C_Mm LTR ERVL 0 475 1 6 1476 642 26 0 0 chr1 116905916 116905992 -80289440 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 6 1476 475 370 60 5 chr1 116905993 116906194 -80289238 - B4A SINE B4 -80 212 1 6 1476 24 32 0 0 chr1 116906525 116906556 -80288876 + AT_rich Low_complexity Low_complexity 1 31 0 6 1476 351 0 0 0 chr1 116907468 116907507 -80287925 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1476 549 0 0 0 chr1 116907507 116907567 -80287865 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1476 521 234 105 0 chr1 116907867 116907991 -80287441 - B1_Mus2 SINE Alu 0 147 11 6 1476 368 269 53 21 chr1 116907910 116908005 -80287427 - MT2B LTR ERVL -343 258 161 6 1476 2053 162 31 88 chr1 116908027 116908507 -80286925 - RLTR11B LTR ERVK 0 453 1 6 1476 517 339 6 0 chr1 116908517 116908697 -80286735 - B3A SINE B2 -17 181 1 6 1476 386 309 85 126 chr1 116909444 116909666 -80285766 - B4A SINE B4 -1 291 88 6 1476 1414 209 31 6 chr1 116909666 116909984 -80285448 - ORR1A3 LTR MaLR 0 326 1 6 1476 386 309 85 126 chr1 116909984 116910054 -80285378 - B4A SINE B4 -205 87 13 6 1476 3983 179 74 4 chr1 116910376 116911211 -80284221 - Lx2 LINE L1 -1464 4413 3520 6 1476 7751 183 15 5 chr1 116911212 116913748 -80281684 + Lx2 LINE L1 4427 6996 -1 6 1476 218 255 0 19 chr1 116914197 116914249 -80281183 + GA-rich Low_complexity Low_complexity 3 53 0 6 1476 320 324 115 51 chr1 116914250 116914406 -80281026 + MTD LTR MaLR 196 361 -58 6 1476 542 136 126 0 chr1 116914412 116914515 -80280917 - Lx2 LINE L1 -169 6828 6713 6 1476 267 325 47 6 chr1 116914583 116914753 -80280679 - L1M2 LINE L1 -837 5306 5130 6 1476 245 122 0 0 chr1 116914932 116914981 -80280451 - Lx LINE L1 -6 6648 6600 6 1476 245 245 155 10 chr1 116914974 116915077 -80280355 - L1M2 LINE L1 -1276 4867 4750 6 1476 207 100 0 0 chr1 116915172 116915202 -80280230 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 184 2618 242 67 16 chr1 116915361 116916566 -80278866 + L1_Rod LINE L1 758 2038 -3809 6 1477 243 255 89 7 chr1 116916604 116916750 -80278682 - L1M2 LINE L1 -2946 3197 3040 6 1477 940 299 41 33 chr1 116917344 116917711 -80277721 - ORR1D2 LTR MaLR 0 370 1 6 1477 1877 261 140 64 chr1 116917711 116918503 -80276929 - ORR1D2-int LTR MaLR 0 1370 519 6 1477 2393 177 122 20 chr1 116918519 116919076 -80276356 + L1_Mur2 LINE L1 508 1121 -5965 6 1477 2819 124 31 0 chr1 116919077 116919587 -80275845 - Lx LINE L1 -660 5994 5439 6 1477 3958 144 22 27 chr1 116919587 116920259 -80275173 + Lx LINE L1 5985 6653 -1 6 1477 6939 165 75 6 chr1 116920265 116921824 -80273608 + L1_Mur2 LINE L1 1108 2771 -3106 6 1477 267 352 197 0 chr1 116922042 116922235 -80273197 + MTE2a LTR MaLR 74 304 -75 6 1477 286 292 52 24 chr1 116922648 116922825 -80272607 - B3A SINE B2 -9 184 1 6 1477 27 73 0 0 chr1 116923084 116923139 -80272293 + AT_rich Low_complexity Low_complexity 1 55 0 6 1477 749 289 0 16 chr1 116923223 116923416 -80272016 - B3 SINE B2 -1 215 26 6 1477 1059 202 28 14 chr1 116924785 116925001 -80270431 - URR1B DNA MER1_type -1 224 6 6 1477 336 259 0 0 chr1 116925086 116925194 -80270238 + CT-rich Low_complexity Low_complexity 2 109 0 6 1477 222 398 59 59 chr1 116925207 116925223 -80270209 - B4 SINE B4 -73 219 182 6 1477 453 246 20 13 chr1 116925223 116925337 -80270095 - B1_Mur1 SINE Alu -34 116 5 6 1477 222 398 59 59 chr1 116925337 116925394 -80270038 - B4 SINE B4 -73 181 33 6 1477 678 85 0 0 chr1 116925553 116925647 -80269785 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 6 1477 378 42 0 0 chr1 116926826 116926874 -80268558 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1477 445 318 109 25 chr1 116926967 116927206 -80268226 + MER2 DNA MER2_type 34 292 -53 6 1477 477 122 0 0 chr1 116927236 116927310 -80268122 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1477 246 368 91 51 chr1 116927311 116927486 -80267946 - B4 SINE B4 -23 269 88 6 1477 594 317 52 28 chr1 116927643 116927854 -80267578 + B3 SINE B2 1 216 0 7 1477 388 365 20 33 chr1 116927911 116928064 -80267368 + B3A SINE B2 9 159 -39 7 1477 366 61 0 0 chr1 116928072 116928121 -80267311 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1477 546 16 0 0 chr1 116928828 116928891 -80266541 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1477 297 0 0 0 chr1 116929244 116929277 -80266155 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 7 1477 828 312 0 9 chr1 116929334 116929557 -80265875 - MTC LTR MaLR 0 421 201 7 1477 765 273 197 55 chr1 116929580 116930158 -80265274 - Lx9 LINE L1 -2 7642 6983 7 1477 283 321 47 151 chr1 116931460 116931755 -80263677 + B4A SINE B4 13 292 0 7 1477 401 320 75 25 chr1 116931857 116932051 -80263381 - B3A SINE B2 -10 206 1 7 1477 608 199 29 0 chr1 116933375 116933511 -80261921 + URR1A DNA MER1_type 84 223 -3 7 1477 241 315 64 35 chr1 116933511 116933538 -80261894 - CYRA11_Mm Unknown Y-chromosome -295 287 147 7 1477 252 269 26 0 chr1 116934487 116934565 -80260867 - L1M3 LINE L1 -2309 3831 3752 7 1477 309 266 91 17 chr1 116934997 116935295 -80260137 - L1M3 LINE L1 -2734 3406 3087 7 1477 194 0 0 37 chr1 116935542 116935569 -80259863 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1477 617 295 77 40 chr1 116935917 116936189 -80259243 + Lx7 LINE L1 7039 7320 -376 7 1477 478 239 29 29 chr1 116936192 116936330 -80259102 - RLTR22_Mur LTR ERVK -19 1829 1692 7 1477 1956 157 146 12 chr1 116936350 116936762 -80258670 - RLTR22_Mur LTR ERVK -1381 467 1 7 1477 430 357 6 29 chr1 116937084 116937257 -80258175 - B3A SINE B2 -16 182 14 7 1477 1861 268 59 8 chr1 116937541 116938064 -80257368 + Lx2B LINE L1 6431 6980 -20 7 1477 7465 91 5 14 chr1 116938215 116939247 -80256185 + RLTR13D5 LTR ERVK 1 1023 0 7 1477 22 0 0 0 chr1 116939532 116939554 -80255878 + AT_rich Low_complexity Low_complexity 1 22 0 7 1477 23 0 0 0 chr1 116939610 116939633 -80255799 + AT_rich Low_complexity Low_complexity 1 23 0 7 1477 508 229 9 0 chr1 116940263 116940368 -80255064 - RCHARR1 DNA MER1_type -6 968 863 7 1477 661 313 26 9 chr1 116940368 116940597 -80254835 + Lx9 LINE L1 6760 6992 -652 7 1477 432 271 0 0 chr1 116940598 116940694 -80254738 + Lx6 LINE L1 7225 7320 -140 7 1477 258 211 0 0 chr1 116940797 116940854 -80254578 + A-rich Low_complexity Low_complexity 1 57 0 7 1477 22 35 0 0 chr1 116940977 116941006 -80254426 + AT_rich Low_complexity Low_complexity 1 29 0 7 1477 362 403 48 52 chr1 116941023 116941295 -80254137 + B4 SINE B4 9 279 -13 7 1477 663 284 50 69 chr1 116941301 116941661 -80253771 - RLTR10D LTR ERVK 0 359 7 7 1477 6759 113 43 3 chr1 116941701 116943039 -80252393 - L1_Mus3 LINE L1 0 6638 5252 7 1477 5143 93 4 11 chr1 116943039 116943777 -80251655 + L1_Mus2 LINE L1 5831 6563 -3 7 1477 846 229 153 25 chr1 116943925 116944167 -80251265 - Lx2B LINE L1 0 7000 6728 7 1477 1886 169 6 0 chr1 116944169 116944489 -80250943 + ORR1A2 LTR MaLR 6 327 0 7 1477 2990 173 31 7 chr1 116944490 116945072 -80250360 + ORR1A2-int LTR MaLR 2 597 -1195 7 1477 575 268 0 16 chr1 116945005 116945045 -80250387 + MT2B LTR ERVL 130 167 -434 7 1477 356 289 149 0 chr1 116945045 116945159 -80250273 + B1_Mur1 SINE Alu 4 134 -15 7 1477 698 124 18 0 chr1 116945160 116945273 -80250159 - Lx2B LINE L1 -283 6717 6603 7 1477 383 258 112 92 chr1 116945272 116945468 -80249964 + Lx8 LINE L1 6845 7044 -429 7 1477 30 27 0 0 chr1 116945810 116945847 -80249585 + AT_rich Low_complexity Low_complexity 1 37 0 7 1477 240 35 0 0 chr1 116946144 116946173 -80249259 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1477 297 374 51 26 chr1 116946224 116946419 -80249013 + B4A SINE B4 7 206 -86 7 1477 2260 278 13 66 chr1 116946368 116946475 -80248957 - ORR1D-int LTR MaLR -282 1088 983 7 1477 5914 144 28 14 chr1 116946475 116947484 -80247948 + RLTR13D2 LTR ERVK 1 1023 0 7 1477 2260 278 13 66 chr1 116947484 116948132 -80247300 - ORR1D-int LTR MaLR -388 982 373 7 1477 1530 257 57 29 chr1 116948416 116949085 -80246347 + L1_Rod LINE L1 767 1467 -4380 7 1477 416 67 0 16 chr1 116949085 116949146 -80246286 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1477 207 69 0 0 chr1 116949146 116949174 -80246258 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1477 1175 218 94 26 chr1 116949174 116949316 -80246116 + L1_Rod LINE L1 1468 1608 -4239 7 1477 647 273 49 26 chr1 116949316 116949662 -80245770 + L1_Rod LINE L1 1773 2126 -3721 7 1477 1766 224 22 19 chr1 116949662 116950026 -80245406 + ORR1B1 LTR MaLR 3 367 -27 7 1477 3654 69 23 4 chr1 116950026 116950508 -80244924 - L1Md_F2 LINE L1 -12 6570 6080 7 1477 2559 179 28 49 chr1 116950508 116951300 -80244132 + L1_Mur1 LINE L1 2518 3431 -2452 7 1477 7750 178 33 23 chr1 116951316 116954008 -80241424 + Lx2B LINE L1 4279 6999 -1 7 1477 237 83 0 0 chr1 116954102 116954138 -80241294 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1477 1398 270 66 28 chr1 116954165 116954775 -80240657 + Lx9 LINE L1 5421 6098 -1546 7 1477 2220 251 87 72 chr1 116954850 116955656 -80239776 + Lx9 LINE L1 6311 7128 -516 7 1477 341 284 16 16 chr1 116956159 116956288 -80239144 - MER52-int LTR ERV1 -1985 5106 4978 7 1477 4432 82 2 2 chr1 116956579 116957166 -80238266 + LTRIS_Mus LTR ERV1 1 587 0 7 1477 4658 276 25 44 chr1 116958512 116959069 -80236363 - RodERV21-int LTR ERV1 -2575 2416 1860 7 1477 1090 84 0 0 chr1 116959069 116959211 -80236221 - B1_Mus2 SINE Alu -5 142 1 7 1477 4658 276 25 44 chr1 116959211 116960000 -80235432 - RodERV21-int LTR ERV1 -3132 1859 1095 7 1477 2711 69 135 12 chr1 116960133 116960556 -80234876 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1477 697 298 73 37 chr1 116960558 116960858 -80234574 - RodERV21-int LTR ERV1 -3969 1022 712 7 1477 263 311 153 16 chr1 116961364 116961488 -80233944 + MTE2a LTR MaLR 4 144 -235 7 1477 415 311 75 129 chr1 116961394 116961796 -80233636 + MT2A LTR ERVL 45 424 -109 7 1477 261 0 0 0 chr1 116962173 116962202 -80233230 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1477 578 209 8 0 chr1 116963133 116963267 -80232165 + GA-rich Low_complexity Low_complexity 4 138 0 7 1477 401 263 0 0 chr1 116963291 116963386 -80232046 + MT2A LTR ERVL 206 300 -233 7 1477 5523 183 78 192 chr1 116963500 116964047 -80231385 + L1_Mus4 LINE L1 4068 4732 -1154 7 1477 243 0 0 0 chr1 116964047 116964074 -80231358 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 7 1477 5523 183 78 192 chr1 116964074 116964775 -80230657 + L1_Mus4 LINE L1 4733 5079 -807 7 1477 3937 9 2 0 chr1 116964775 116965221 -80230211 + L1Md_A LINE L1 6135 6581 -1 7 1477 6660 134 38 76 chr1 116965221 116966769 -80228663 + L1_Mus4 LINE L1 5080 6629 -7 7 1477 1266 90 0 0 chr1 116966796 116966974 -80228458 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 7 1477 450 0 0 0 chr1 116968019 116968069 -80227363 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1477 408 104 0 0 chr1 116968069 116968135 -80227297 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1477 589 321 50 32 chr1 116968150 116968430 -80227002 - B4A SINE B4 -6 286 2 7 1477 1437 38 49 0 chr1 116968808 116968992 -80226440 + L1Md_F2 LINE L1 5393 5585 -298 7 1477 7413 75 2 14 chr1 116968993 116970001 -80225431 + L1Md_F2 LINE L1 5587 6582 0 7 1477 405 0 0 0 chr1 116970020 116970065 -80225367 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 7 1477 219 88 0 0 chr1 116970279 116970313 -80225119 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1477 302 0 26 0 chr1 116970324 116970362 -80225070 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1477 201 182 0 0 chr1 116970536 116970569 -80224863 + T-rich Low_complexity Low_complexity 1 33 0 7 1477 584 323 42 66 chr1 116970580 116970792 -80224640 - ID_B1 SINE B4 -11 213 7 7 1477 396 364 46 46 chr1 116971919 116972135 -80223297 + B4 SINE B4 5 220 -72 7 1477 26181 137 46 21 chr1 116972357 116978404 -80217028 - L1_Mus2 LINE L1 0 6566 357 7 1477 809 251 12 90 chr1 116978408 116978714 -80216718 - L1VL1 LINE L1 -5934 484 28 7 1477 1834 123 84 32 chr1 116978729 116979040 -80216392 - Lx3_Mus LINE L1 -66 6943 6617 7 1477 765 91 55 0 chr1 116979038 116979148 -80216284 + Lx3_Mus LINE L1 6508 6623 -386 7 1477 1014 334 115 55 chr1 116979155 116979768 -80215664 - Lx8 LINE L1 -458 7015 6407 7 1477 282 116 0 0 chr1 116979768 116979811 -80215621 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1477 1014 334 115 55 chr1 116979811 116980014 -80215418 - Lx8 LINE L1 -1067 6406 6166 7 1477 636 26 0 0 chr1 116980014 116980092 -80215340 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1477 1014 334 115 55 chr1 116980092 116980472 -80214960 - Lx8 LINE L1 -1308 6165 5764 7 1477 450 0 0 0 chr1 116980472 116980522 -80214910 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1477 1014 301 113 12 chr1 116980522 116980995 -80214437 - Lx8 LINE L1 -1710 5763 5230 7 1477 22 35 0 0 chr1 116981004 116981033 -80214399 + AT_rich Low_complexity Low_complexity 1 29 0 7 1477 21 57 0 0 chr1 116981696 116981731 -80213701 + AT_rich Low_complexity Low_complexity 1 35 0 7 1477 204 337 60 0 chr1 116982046 116982129 -80213303 - L3 LINE CR1 -89 4400 4313 7 1477 252 0 0 0 chr1 116982392 116982420 -80213012 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1477 887 107 53 0 chr1 116982420 116982551 -80212881 - B1_Mus1 SINE Alu -8 140 3 7 1477 475 290 73 41 chr1 116982600 116982819 -80212613 + MER2 DNA MER2_type 89 314 -31 7 1477 624 328 15 74 chr1 116983279 116983557 -80211875 + ORR1E LTR MaLR 31 285 -85 7 1477 191 88 29 0 chr1 116983575 116983609 -80211823 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1477 643 310 45 27 chr1 116983687 116983998 -80211434 - L1MA4A LINE L1 -373 5930 5616 7 1477 1571 159 131 3 chr1 116984268 116984558 -80210874 - ORR1A2 LTR MaLR 0 327 1 7 1477 372 347 98 39 chr1 116984694 116984921 -80210511 + B4A SINE B4 8 238 -54 7 1477 192 97 0 0 chr1 116984948 116984979 -80210453 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1477 24 32 0 0 chr1 116985046 116985077 -80210355 + AT_rich Low_complexity Low_complexity 1 31 0 7 1477 26 0 0 0 chr1 116985921 116985947 -80209485 + AT_rich Low_complexity Low_complexity 1 26 0 7 1477 332 220 40 51 chr1 116986473 116986650 -80208782 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 7 1477 183 156 0 0 chr1 116987157 116987189 -80208243 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1477 711 289 23 11 chr1 116987196 116987371 -80208061 + B3 SINE B2 35 211 -5 7 1477 810 327 64 47 chr1 116987592 116988198 -80207234 + L1MD LINE L1 2828 3447 -2699 7 1477 3891 228 39 72 chr1 116988923 116990465 -80204967 + L1_Mur2 LINE L1 920 2421 -3456 7 1477 3046 51 15 13 chr1 116990465 116990860 -80204572 - MTA_Mm LTR MaLR 0 396 1 8 1477 3891 234 39 74 chr1 116990860 116990918 -80204514 + L1_Mur2 LINE L1 2422 2474 -3403 7 1477 2631 162 38 71 chr1 116990919 116991469 -80203963 + Lx2B LINE L1 6468 6999 -1 8 1477 1822 225 45 8 chr1 116991466 116991976 -80203456 + L1_Mur2 LINE L1 2464 2992 -2885 7 1477 2641 140 26 0 chr1 116991977 116992398 -80203034 + L1_Mm LINE L1 5418 5849 -34 8 1477 968 168 0 10 chr1 116992409 116992602 -80202830 + L1_Mus4 LINE L1 6442 6632 -4 8 1477 6084 180 40 107 chr1 116992609 116992721 -80202711 + L1_Mur2 LINE L1 3010 3126 -2751 7 1477 831 21 0 0 chr1 116992721 116992818 -80202614 + (GA)n Simple_repeat Simple_repeat 2 98 0 8 1477 6084 180 40 107 chr1 116992818 116993263 -80202169 + L1_Mur2 LINE L1 3127 3574 -2303 7 1477 1163 143 14 5 chr1 116993263 116993481 -80201951 + Lx3_Mus LINE L1 6775 6994 -15 8 1477 2548 82 9 3 chr1 116993481 116993824 -80201608 + IAPLTR4 LTR ERVK 1 345 0 8 1477 6084 197 36 139 chr1 116993824 116995746 -80199686 + L1_Mur2 LINE L1 3575 5097 -783 7 1477 260 245 0 0 chr1 116995759 116995812 -80199620 + L1Md_F LINE L1 171 223 -6393 8 1477 4063 126 45 1 chr1 116995808 116996843 -80198589 + L1Md_F LINE L1 503 1592 -4291 8 1477 18378 19 3 12 chr1 116996839 117000000 -80195432 + L1Md_A LINE L1 253 3378 -2505 8 1477 19005 15 3 0 chr1 117000000 117002201 -80193231 + L1Md_A LINE L1 3379 5586 -297 1 1477 8585 23 1 0 chr1 117002201 117003196 -80192236 + L1Md_A LINE L1 5587 6582 0 1 1477 28935 96 3 16 chr1 117003197 117005136 -80190296 + L1_Mm LINE L1 1578 3474 -2409 2 1477 3715 7 0 0 chr1 117005136 117005556 -80189876 + L1Md_A LINE L1 6163 6582 0 3 1477 28935 96 3 16 chr1 117005556 117007874 -80187558 + L1_Mm LINE L1 3475 5780 -103 2 1477 1758 45 5 0 chr1 117007871 117008091 -80187341 + L1Md_F3 LINE L1 6337 6557 -27 4 1477 204 40 0 0 chr1 117008091 117008116 -80187316 + (TAA)n Simple_repeat Simple_repeat 3 27 0 5 1477 1048 144 0 55 chr1 117008171 117008335 -80187097 + B2_Mm2 SINE B2 1 161 -34 6 1477 492 18 0 0 chr1 117008335 117008392 -80187040 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 7 1477 1048 144 0 55 chr1 117008392 117008426 -80187006 + B2_Mm2 SINE B2 162 188 -7 6 1477 730 219 6 0 chr1 117008439 117008608 -80186824 - MERVL_2A-int LTR ERVL -127 5634 5465 8 1477 3360 207 13 88 chr1 117008628 117008896 -80186536 + Lx5 LINE L1 5103 5308 -569 9 1477 941 122 7 7 chr1 117008896 117009044 -80186388 - B1_Mus1 SINE Alu 0 148 1 1 1477 5599 220 41 44 chr1 117009044 117010656 -80184776 + Lx5 LINE L1 5309 6974 -76 9 1477 556 262 7 3 chr1 117010642 117010801 -80184631 + Lx5 LINE L1 6201 6362 -696 9 1477 801 24 91 0 chr1 117010869 117011034 -80184398 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1477 306 363 61 15 chr1 117011396 117011592 -80183840 + L1MD1 LINE L1 5671 5875 -367 1 1477 904 239 48 10 chr1 117011942 117012149 -80183283 - RLTR26 LTR ERVK 0 642 428 1 1477 204 80 0 138 chr1 117012232 117012253 -80183179 + A-rich Low_complexity Low_complexity 4 20 0 1 1477 1155 46 0 0 chr1 117012253 117012440 -80182992 + L1Md_A LINE L1 6432 6582 0 1 1477 567 314 39 25 chr1 117012667 117012700 -80182732 - Lx5 LINE L1 -394 6656 6622 1 1477 1264 158 5 0 chr1 117012700 117012922 -80182510 - Lx2 LINE L1 0 6997 6775 1 1477 1691 130 4 0 chr1 117012922 117013169 -80182263 - Lx2 LINE L1 -354 6643 6396 1 1477 535 286 67 19 chr1 117013232 117013442 -80181990 - RLTR16 LTR ERVK -254 251 32 1 1477 231 61 0 0 chr1 117013825 117013858 -80181574 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1477 323 263 126 52 chr1 117015549 117015781 -80179651 + MER44A DNA MER2_type 71 307 -32 2 1477 3000 223 75 48 chr1 117016184 117016970 -80178462 + RMER13B LTR ERVK 8 814 -94 2 1477 3984 122 16 2 chr1 117017078 117017684 -80177748 + L1_Mus4 LINE L1 6015 6629 -7 2 1477 669 25 0 0 chr1 117017754 117017833 -80177599 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1477 3102 279 39 53 chr1 117018654 117019028 -80176404 + L1_Mur3 LINE L1 925 1294 -6434 2 1477 195 42 0 0 chr1 117019028 117019052 -80176380 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2 1477 3102 226 46 110 chr1 117019052 117020328 -80175104 + L1_Mur3 LINE L1 1248 2438 -3442 2 1477 454 104 0 25 chr1 117020331 117020410 -80175022 + L1Md_F2 LINE L1 6494 6570 -12 2 1477 5547 219 21 68 chr1 117020411 117021194 -80174238 + L1_Mur3 LINE L1 2997 3750 -2130 2 1477 972 105 0 0 chr1 117021194 117021337 -80174095 + (GAAA)n Simple_repeat Simple_repeat 4 146 0 2 1477 5547 219 21 68 chr1 117021337 117021908 -80173524 + L1_Mur3 LINE L1 3751 4285 -1595 2 1477 209 33 33 0 chr1 117021908 117021938 -80173494 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1477 5547 219 21 68 chr1 117021938 117022233 -80173199 + L1_Mur3 LINE L1 4286 4569 -1311 2 1477 846 134 0 0 chr1 117022304 117022423 -80173009 + Lx2 LINE L1 6524 6642 -355 2 1477 1228 144 5 18 chr1 117022424 117022643 -80172789 + Lx2 LINE L1 6775 6990 -7 2 1477 236 204 19 0 chr1 117022810 117022864 -80172568 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1477 197 33 33 0 chr1 117024784 117024814 -80170618 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1477 358 252 5 90 chr1 117024909 117025082 -80170350 - Lx5 LINE L1 -8 7042 6914 3 1477 2671 222 57 117 chr1 117025082 117025149 -80170283 - RLTR25B LTR ERVK -115 913 860 3 1477 540 0 0 0 chr1 117025149 117025209 -80170223 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1477 2671 222 57 117 chr1 117025209 117025480 -80169952 - RLTR25B LTR ERVK -169 859 627 3 1477 7363 48 18 4 chr1 117025480 117026396 -80169036 + L1Md_F2 LINE L1 5655 6582 0 3 1477 2671 222 57 117 chr1 117026396 117027027 -80168405 - RLTR25B LTR ERVK -402 626 2 3 1477 4477 74 9 0 chr1 117027254 117027836 -80167596 - LTRIS_Mus LTR ERV1 0 587 1 3 1477 181 339 0 0 chr1 117028375 117028431 -80167001 - MIR SINE MIR -53 209 154 3 1477 2814 51 0 0 chr1 117028730 117029062 -80166370 - IAPEY3_LTR LTR ERVK 0 332 1 3 1477 403 216 50 40 chr1 117030111 117030212 -80165220 - B4 SINE B4 -187 105 4 3 1477 554 273 155 34 chr1 117030971 117031267 -80164165 + RLTR9A LTR ERVK 1 332 -36 4 1477 216 0 0 0 chr1 117031267 117031291 -80164141 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1477 38 0 0 0 chr1 117031561 117031599 -80163833 + AT_rich Low_complexity Low_complexity 1 38 0 4 1477 333 355 11 0 chr1 117031652 117031745 -80163687 - RSINE1 SINE B4 -16 149 56 4 1477 507 96 0 0 chr1 117032627 117032710 -80162722 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 1477 306 106 0 0 chr1 117033007 117033054 -80162378 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1477 231 382 59 62 chr1 117033346 117033686 -80161746 + ORR1E LTR MaLR 21 359 0 4 1477 518 352 80 40 chr1 117033832 117034205 -80161227 - MTD LTR MaLR -14 405 18 4 1477 861 184 6 0 chr1 117034660 117034823 -80160609 - Lx LINE L1 -8 6646 6483 4 1477 250 272 101 51 chr1 117034845 117035023 -80160409 - Tigger7 DNA MER2_type -50 2441 2255 4 1477 2561 35 0 3 chr1 117035239 117035557 -80159875 - L1_Mm LINE L1 -603 5280 4964 5 1477 958 60 6 74 chr1 117035557 117035719 -80159713 + L1Md_F3 LINE L1 6434 6584 0 5 1477 397 304 0 29 chr1 117035971 117035989 -80159443 - Lx6 LINE L1 -161 7535 7520 5 1477 210 45 68 0 chr1 117035989 117036033 -80159399 + (CAA)n Simple_repeat Simple_repeat 3 49 0 5 1477 738 321 3 18 chr1 117036033 117036305 -80159127 - Lx6 LINE L1 -177 7519 6987 5 1477 8233 147 23 23 chr1 117036323 117036441 -80158991 - Lx2 LINE L1 -1 6996 6854 5 1477 5653 145 33 10 chr1 117036441 117037377 -80158055 + RMER17B LTR ERVK 1 958 0 5 1477 8233 167 17 22 chr1 117037377 117039541 -80155891 - Lx2 LINE L1 -144 6853 4711 5 1477 3918 98 27 5 chr1 117039541 117040133 -80155299 + RLTR22_Mus LTR ERVK 1 605 -1203 5 1477 1150 87 0 0 chr1 117040139 117040300 -80155132 - L1_Mus2 LINE L1 0 6566 6406 5 1477 2956 141 12 14 chr1 117040300 117040920 -80154512 - L1Md_F LINE L1 -5374 1186 587 5 1477 7341 113 30 75 chr1 117040921 117042238 -80153194 + RLTR22_Mur LTR ERVK 585 1842 -6 5 1477 2570 180 63 11 chr1 117042243 117042300 -80153132 - Lx2 LINE L1 -1167 4710 4657 5 1477 4381 8 0 0 chr1 117042300 117042787 -80152645 + L1Md_T LINE L1 6096 6582 0 6 1477 2570 180 63 11 chr1 117042787 117043269 -80152163 - Lx2 LINE L1 -1221 4656 4143 5 1477 5242 175 57 19 chr1 117043267 117043477 -80151955 + L1_Mur1 LINE L1 2959 3165 -2721 6 1477 189 0 0 0 chr1 117043477 117043498 -80151934 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1477 5242 175 57 19 chr1 117043498 117044431 -80151001 + L1_Mur1 LINE L1 3166 4145 -1741 6 1477 1744 280 28 26 chr1 117044431 117044960 -80150472 - Lx6 LINE L1 -461 6999 6470 6 1477 2340 195 142 15 chr1 117044962 117045503 -80149929 - RMER19C LTR ERVK -1 610 1 6 1477 689 208 103 54 chr1 117045534 117046049 -80149383 - MurERV4_19-int LTR ERVK -18 5762 5305 6 1477 2516 170 50 18 chr1 117046106 117046603 -80148829 - MurERV4_19-int LTR ERVK -884 4896 4384 6 1477 643 165 8 16 chr1 117046602 117046725 -80148707 - MurERV4_19-int LTR ERVK -1743 4037 3916 6 1477 1774 194 6 12 chr1 117046731 117047050 -80148382 - ORR1A2 LTR MaLR -8 319 3 6 184 5485 175 21 79 chr1 117047052 117047350 -80148082 - MurERV4_19-int LTR ERVK -1862 3918 3609 6 1478 522 83 0 0 chr1 117047350 117047422 -80148010 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1478 5485 175 21 79 chr1 117047422 117048416 -80147016 - MurERV4_19-int LTR ERVK -2172 3608 2702 6 1478 1800 113 65 23 chr1 117048425 117048732 -80146700 + IAPLTR2b LTR ERVK 1 320 -7 6 1478 1678 189 45 0 chr1 117048739 117049072 -80146360 - MurERV4_19-int LTR ERVK -3085 2695 2348 6 1478 618 85 0 0 chr1 117049330 117049424 -80146008 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 1478 225 197 0 0 chr1 117049426 117049497 -80145935 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1478 332 322 87 0 chr1 117050339 117050488 -80144944 - MER58A DNA MER1_type -12 212 51 7 1478 195 42 0 0 chr1 117050978 117051002 -80144430 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1478 775 306 99 4 chr1 117051462 117051724 -80143708 - B4A SINE B4 0 292 6 7 1478 26 0 0 0 chr1 117051769 117051795 -80143637 + AT_rich Low_complexity Low_complexity 1 26 0 7 1478 6307 61 1 5 chr1 117052131 117052944 -80142488 + L1Md_F2 LINE L1 5748 6559 -23 7 1478 270 0 0 0 chr1 117052944 117052974 -80142458 + (TAA)n Simple_repeat Simple_repeat 1 30 0 7 1478 213 125 0 0 chr1 117053137 117053153 -80142279 + (A)n Simple_repeat Simple_repeat 1 16 0 7 1478 4797 49 18 2 chr1 117053153 117053784 -80141648 + L1Md_F2 LINE L1 5963 6582 0 7 1478 32 43 0 0 chr1 117053880 117053926 -80141506 + AT_rich Low_complexity Low_complexity 1 46 0 7 1478 322 233 270 13 chr1 117054242 117054472 -80140960 + L1M2 LINE L1 5084 5372 -771 7 1478 7825 47 23 0 chr1 117054560 117055528 -80139904 + L1Md_F2 LINE L1 5591 6580 -2 8 1478 693 24 0 0 chr1 117055666 117055749 -80139683 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 1478 25 0 0 0 chr1 117055909 117055934 -80139498 + AT_rich Low_complexity Low_complexity 1 25 0 8 1478 954 237 30 9 chr1 117056369 117056599 -80138833 - Lx LINE L1 -293 6361 6127 8 1478 1997 113 6 0 chr1 117056597 117056924 -80138508 + MusHAL1 LINE L1 228 556 -2156 8 1478 460 367 29 24 chr1 117057916 117058086 -80137346 - ID_B1 SINE B4 -52 172 2 8 1478 294 185 0 0 chr1 117058345 117058399 -80137033 - ORR1E LTR MaLR 0 379 326 8 1478 893 334 47 51 chr1 117058401 117058667 -80136765 + Lx8 LINE L1 6938 7210 -263 8 1478 350 0 44 0 chr1 117058667 117058712 -80136720 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 1478 1014 116 0 0 chr1 117058712 117058850 -80136582 - B1_Mus1 SINE Alu -9 139 2 8 1478 893 334 47 51 chr1 117058850 117059115 -80136317 + Lx8 LINE L1 7211 7467 -6 8 1478 911 316 67 10 chr1 117059140 117059440 -80135992 - ORR1E LTR MaLR -41 318 2 8 1478 204 40 0 0 chr1 117060361 117060386 -80135046 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 9 1478 414 328 25 40 chr1 117060638 117060838 -80134594 - B4A SINE B4 -45 247 51 9 1478 422 49 16 0 chr1 117061413 117061474 -80133958 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 9 1478 523 274 16 0 chr1 117061477 117061601 -80133831 - B1_Mur2 SINE Alu -14 135 10 9 1478 288 317 140 57 chr1 117061629 117061992 -80133440 + MTE2a LTR MaLR 18 378 -1 9 1478 361 369 6 6 chr1 117062401 117062559 -80132873 + Lx8 LINE L1 7089 7246 -227 9 1478 21299 138 17 17 chr1 117062735 117065844 -80129588 - L1_Mus3 LINE L1 -6 6632 3478 9 1478 297 0 0 0 chr1 117065844 117065877 -80129555 + (TTG)n Simple_repeat Simple_repeat 1 33 0 9 1478 21299 154 21 23 chr1 117065877 117067505 -80127927 - L1_Mus3 LINE L1 -2406 3477 1898 9 1478 322 311 56 0 chr1 117067576 117067666 -80127766 - B3A SINE B2 -103 95 1 9 1478 464 338 27 7 chr1 117067915 117068061 -80127371 - B3A SINE B2 -49 149 1 9 1478 201 74 0 0 chr1 117068061 117068088 -80127344 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1478 31 26 0 0 chr1 117068095 117068133 -80127299 + AT_rich Low_complexity Low_complexity 1 38 0 1 1478 515 348 8 119 chr1 117068420 117068822 -80126610 + ORR1E LTR MaLR 1 357 -2 1 1478 242 346 0 82 chr1 117068872 117068982 -80126450 - B4A SINE B4 0 292 192 1 1478 757 342 38 18 chr1 117069135 117069528 -80125904 - BGLII_B LTR ERVK -40 401 1 1 1478 552 262 29 75 chr1 117070154 117070393 -80125039 + Lx9 LINE L1 6894 7121 -523 1 1478 1441 269 45 82 chr1 117070503 117070702 -80124730 + RMER19C LTR ERVK 92 300 -311 1 1478 560 43 33 0 chr1 117070702 117070794 -80124638 + L1Md_F2 LINE L1 6488 6582 0 1 1478 1441 269 45 82 chr1 117070794 117070807 -80124625 + RMER19C LTR ERVK 301 310 -301 1 1478 315 0 0 0 chr1 117070807 117070842 -80124590 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1478 1441 269 45 82 chr1 117070842 117071162 -80124270 + RMER19C LTR ERVK 311 604 -7 1 1478 185 0 0 39 chr1 117071325 117071351 -80124081 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1 1478 712 171 79 74 chr1 117071384 117071574 -80123858 - B2_Mm2 SINE B2 -3 192 2 1 1478 23 33 0 0 chr1 117071592 117071622 -80123810 + AT_rich Low_complexity Low_complexity 1 30 0 1 1478 5877 178 18 5 chr1 117072411 117073475 -80121957 + Lx2B LINE L1 5587 6664 -336 1 1478 248 262 12 23 chr1 117073469 117073555 -80121877 + Lx2A1 LINE L1 6906 6990 -18 1 1478 480 18 0 0 chr1 117073555 117073612 -80121820 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1478 402 389 79 29 chr1 117074108 117074349 -80121083 + B4A SINE B4 5 257 -35 1 1478 534 86 0 0 chr1 117074443 117074524 -80120908 + (GA)n Simple_repeat Simple_repeat 1 81 0 1 1478 585 269 9 157 chr1 117074671 117074900 -80120532 + ORR1D1 LTR MaLR 38 232 -142 1 1478 268 289 142 58 chr1 117075238 117075560 -80119872 - RMER13B LTR ERVK -391 469 166 1 1478 421 272 77 90 chr1 117075612 117075804 -80119628 + ORR1D1 LTR MaLR 183 382 -2 1 1478 1333 92 11 5 chr1 117075991 117076177 -80119255 + B2_Mm2 SINE B2 3 189 -6 1 1478 291 328 57 16 chr1 117076225 117076356 -80119076 - MIRb SINE MIR -77 191 49 1 1478 483 200 7 37 chr1 117076364 117076499 -80118933 - L1_Mus3 LINE L1 -1 6637 6507 1 1478 325 372 92 39 chr1 117077540 117077747 -80117685 - B4A SINE B4 -16 276 59 1 1478 677 219 176 21 chr1 117078129 117078271 -80117161 + RMER12 LTR ERVK 1 157 -1165 1 1478 525 32 0 0 chr1 117078271 117078334 -80117098 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1 1478 677 219 176 21 chr1 117078334 117078424 -80117008 + RMER12 LTR ERVK 158 269 -1053 1 1478 201 39 0 0 chr1 117078424 117078450 -80116982 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1478 2092 226 53 8 chr1 117078473 117078946 -80116486 + Lx2A1 LINE L1 6499 6992 -16 1 1478 1786 240 77 90 chr1 117078949 117079773 -80115659 + RLTR22_Mur LTR ERVK 312 1124 -724 1 1478 32 57 0 0 chr1 117079773 117079826 -80115606 + AT_rich Low_complexity Low_complexity 1 53 0 1 1478 544 77 0 32 chr1 117079861 117079955 -80115477 - L1_Mus3 LINE L1 0 6638 6548 1 1478 11460 138 3 2 chr1 117079955 117081751 -80113681 + L1_Mus2 LINE L1 4051 5848 -35 1 1478 2210 92 23 0 chr1 117081751 117082057 -80113375 - ORR1A1 LTR MaLR 0 346 34 1 1478 2943 34 42 8 chr1 117082057 117082440 -80112992 - MTA_Mm LTR MaLR 0 396 1 1 1478 250 111 0 22 chr1 117082440 117082478 -80112954 - ORR1A1 LTR MaLR -309 37 1 1 1478 899 90 8 0 chr1 117082478 117082611 -80112821 + L1_Mus2 LINE L1 5844 5977 -589 1 1478 2250 256 104 33 chr1 117082611 117082802 -80112630 + RLTR22_Mur LTR ERVK 1108 1347 -501 1 1478 302 98 20 0 chr1 117082802 117082853 -80112579 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1478 2250 256 104 33 chr1 117082853 117083353 -80112079 + RLTR22_Mur LTR ERVK 1348 1847 -1 1 1478 498 226 0 10 chr1 117083353 117083454 -80111978 - RLTR22_Mur LTR ERVK -1583 265 166 1 1478 292 143 0 0 chr1 117083459 117083521 -80111911 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1478 687 201 0 0 chr1 117083521 117083670 -80111762 + (TA)n Simple_repeat Simple_repeat 1 149 0 1 1478 251 317 0 24 chr1 117083670 117083754 -80111678 + RLTR22_Mur LTR ERVK 161 242 -1606 1 1478 279 0 0 0 chr1 117083758 117083789 -80111643 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1478 363 189 341 8 chr1 117083790 117083913 -80111519 - RMER12 LTR ERVK -1158 164 1 1 1478 549 30 0 0 chr1 117084128 117084195 -80111237 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1478 474 116 35 18 chr1 117084200 117084314 -80111118 + (CAGAGA)n Simple_repeat Simple_repeat 2 117 0 1 1478 305 315 30 63 chr1 117084464 117084637 -80110795 - L1MC1 LINE L1 -254 6079 5914 1 1478 350 21 21 0 chr1 117084637 117084684 -80110748 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1 1478 305 315 30 63 chr1 117084684 117084778 -80110654 - L1MC1 LINE L1 -420 5913 5821 1 1478 316 331 100 33 chr1 117085506 117085656 -80109776 + B4A SINE B4 10 169 -123 1 1478 207 0 0 0 chr1 117085819 117085842 -80109590 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1478 633 90 0 0 chr1 117086215 117086304 -80109128 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 1 1478 415 298 75 29 chr1 117086724 117086897 -80108535 - B3 SINE B2 -1 215 35 1 1478 225 316 56 84 chr1 117087084 117087191 -80108241 - PB1D10 SINE Alu -2 115 12 1 1478 2506 136 46 9 chr1 117087339 117087761 -80107671 + L1_Mur2 LINE L1 4198 4623 -1254 1 1478 207 0 0 0 chr1 117087761 117087784 -80107648 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1478 2506 136 46 9 chr1 117087784 117087814 -80107618 + L1_Mur2 LINE L1 4624 4666 -1211 1 1478 351 375 0 0 chr1 117087911 117088015 -80107417 - B3A SINE B2 -90 108 5 1 1478 1997 239 46 50 chr1 117088393 117088951 -80106481 + RLTR20B3 LTR ERVK 5 527 0 1 1478 239 331 80 7 chr1 117088977 117089114 -80106318 + B3 SINE B2 65 211 -5 1 1478 333 306 17 61 chr1 117089770 117089885 -80105547 - ORR1D2 LTR MaLR -256 114 5 1 1478 216 200 0 0 chr1 117090132 117090182 -80105250 + T-rich Low_complexity Low_complexity 1 50 0 1 1478 1990 310 64 32 chr1 117090338 117091311 -80104121 - Lx9 LINE L1 -173 7471 6468 1 1478 2196 125 6 0 chr1 117091580 117091900 -80103532 - ORR1A2 LTR MaLR 0 327 6 1 1478 6096 141 20 12 chr1 117091902 117092926 -80102506 - ORR1A2-int LTR MaLR 0 1963 931 1 1478 1458 89 51 0 chr1 117092928 117093142 -80102290 - L1Md_F2 LINE L1 -2 6580 6356 1 1478 258 323 56 19 chr1 117093174 117093335 -80102097 - L1_Rod LINE L1 -2258 3589 3423 1 1478 2051 243 34 55 chr1 117093337 117093902 -80101530 - RMER19C LTR ERVK 0 611 1 1 1478 1317 224 35 162 chr1 117093902 117094653 -80100779 - MurERV4_19-int LTR ERVK 0 5780 5126 1 1478 2333 82 0 3 chr1 117094655 117094996 -80100436 - MusHAL1 LINE L1 -2073 1280 941 1 1478 3198 150 39 83 chr1 117094999 117095769 -80099663 + RMER17A LTR ERVK 1 736 -15 1 1478 1832 106 6 0 chr1 117095816 117096135 -80099297 - MusHAL1 LINE L1 -2420 933 614 1 1478 2421 150 30 72 chr1 117096137 117096740 -80098692 - L1_Mus3 LINE L1 0 6638 5981 1 1478 2511 179 45 0 chr1 117096866 117097330 -80098102 - Lx3_Mus LINE L1 -11 6998 6514 1 1478 25 31 0 0 chr1 117097382 117097414 -80098018 + AT_rich Low_complexity Low_complexity 1 32 0 1 1478 744 305 75 10 chr1 117097623 117097931 -80097501 - L1MA4A LINE L1 -365 5938 5611 1 1478 1388 151 8 16 chr1 117098027 117098283 -80097149 - L1_Mus4 LINE L1 -6 6630 6377 1 1478 320 284 34 0 chr1 117098457 117098545 -80096887 - B3 SINE B2 -86 130 40 1 1478 22 35 0 0 chr1 117099817 117099846 -80095586 + AT_rich Low_complexity Low_complexity 1 29 0 1 1478 253 0 54 0 chr1 117100200 117100237 -80095195 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1478 219 173 19 0 chr1 117100248 117100300 -80095132 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1478 1363 221 70 37 chr1 117100463 117100507 -80094925 - ORR1C1 LTR MaLR -7 371 328 1 1478 2964 70 17 12 chr1 117100507 117100926 -80094506 - L1Md_F2 LINE L1 0 6582 6162 1 1478 1363 221 70 37 chr1 117100926 117101209 -80094223 - ORR1C1 LTR MaLR -51 327 33 1 1478 2971 213 41 7 chr1 117101209 117101997 -80093435 + Lx5 LINE L1 5092 5924 -1126 1 1478 1248 211 73 9 chr1 117101991 117102306 -80093126 + Lx5 LINE L1 6070 6404 -596 1 1478 187 103 0 49 chr1 117102306 117102347 -80093085 + T-rich Low_complexity Low_complexity 2 40 0 1 1478 261 0 0 0 chr1 117102663 117102692 -80092740 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1478 614 101 11 0 chr1 117102745 117102834 -80092598 - L1_Mus2 LINE L1 -300 6266 6177 1 1478 6238 94 78 6 chr1 117102846 117103790 -80091642 - RLTR13D5 LTR ERVK -11 1012 1 1 1478 337 71 0 0 chr1 117103790 117103832 -80091600 - L1_Mus2 LINE L1 -384 6182 6141 1 1478 2034 89 0 90 chr1 117103832 117104083 -80091349 + L1_Mus2 LINE L1 6264 6514 -52 1 1478 5078 128 86 14 chr1 117104083 117104600 -80090832 - RMER17A2 LTR ERVK 0 906 378 1 1478 660 48 0 0 chr1 117104600 117104684 -80090748 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1478 5078 128 86 14 chr1 117104684 117105011 -80090421 - RMER17A2 LTR ERVK -529 377 1 1 1478 2034 89 0 90 chr1 117105011 117105092 -80090340 + L1_Mus2 LINE L1 6515 6566 0 1 1478 233 214 53 18 chr1 117105092 117105106 -80090326 - Lx2 LINE L1 -512 6485 6472 1 1478 377 399 11 6 chr1 117105258 117105437 -80089995 - B4 SINE B4 -6 286 107 1 1478 12235 131 42 25 chr1 117106284 117107900 -80087532 + L1Md_F LINE L1 333 1961 -3922 1 1478 207 69 0 0 chr1 117107900 117107929 -80087503 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 1 1478 12235 94 26 5 chr1 117107929 117109028 -80086404 + L1Md_F LINE L1 1962 3102 -2781 1 1478 7057 78 0 5 chr1 117109028 117109966 -80085466 + L1Md_F2 LINE L1 5634 6566 -16 1 1478 29 28 0 0 chr1 117110030 117110066 -80085366 + AT_rich Low_complexity Low_complexity 1 36 0 1 1478 458 306 98 83 chr1 117110230 117110722 -80084710 - L1MB4 LINE L1 -2525 4222 3724 1 1478 374 308 51 0 chr1 117111145 117111301 -80084131 - L1MB4 LINE L1 -6374 233 70 1 1478 292 68 26 40 chr1 117112374 117112450 -80082982 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1 1478 7209 87 17 2 chr1 117112471 117113893 -80081539 - L1_Mus2 LINE L1 0 6654 5129 1 1478 482 330 61 35 chr1 117114519 117114717 -80080715 - B4A SINE B4 -88 204 2 1 1478 3044 45 0 0 chr1 117115250 117115624 -80079808 - L1Md_T LINE L1 0 6582 6209 1 1478 3227 83 6 21 chr1 117116338 117116805 -80078627 - L1Md_F2 LINE L1 0 6582 6123 1 1478 2708 112 2 8 chr1 117118488 117118885 -80076547 + MTB LTR MaLR 1 395 -5 1 1478 252 0 0 0 chr1 117118885 117118913 -80076519 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1478 489 80 23 11 chr1 117119545 117119633 -80075799 + L1Md_F3 LINE L1 6495 6583 -1 1 1478 2326 216 42 13 chr1 117119700 117120300 -80075132 - L1_Mur2 LINE L1 -845 5032 4416 1 1478 723 191 13 7 chr1 117120298 117120451 -80074981 - L1_Mur2 LINE L1 -2418 3459 3306 1 1478 2088 195 47 4 chr1 117120462 117120978 -80074454 + L1_Mur2 LINE L1 2789 3326 -2551 1 1478 2111 239 32 0 chr1 117121195 117121726 -80073706 - L1_Mur2 LINE L1 -3886 1994 1447 1 1478 1439 151 7 58 chr1 117121746 117122020 -80073412 + RMER17A LTR ERVK 490 749 -2 1 1478 7210 232 34 5 chr1 117122023 117123553 -80071879 + L1_Mur3 LINE L1 3066 4622 -1258 1 1478 266 0 29 0 chr1 117123553 117123587 -80071845 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1478 7210 232 34 5 chr1 117123587 117124013 -80071419 + L1_Mur3 LINE L1 4623 5079 -801 1 1478 505 284 35 12 chr1 117124355 117124526 -80070906 + L1_Rod LINE L1 3989 4163 -1684 2 1478 635 271 79 0 chr1 117124514 117124717 -80070715 + Lx7 LINE L1 6694 6912 -784 2 1478 402 139 18 18 chr1 117124726 117124836 -80070596 + T-rich Low_complexity Low_complexity 1 110 0 2 1478 1091 81 0 7 chr1 117124836 117124985 -80070447 - B1_Mus1 SINE Alu 0 148 1 2 1478 758 293 71 42 chr1 117125046 117125381 -80070051 + Lx7 LINE L1 7024 7370 -326 2 1478 5028 79 11 20 chr1 117125381 117126094 -80069338 - L1_Mus3 LINE L1 -3 6635 5929 2 1478 758 293 71 42 chr1 117126094 117126136 -80069296 + Lx7 LINE L1 7371 7412 -284 2 1478 237 65 0 0 chr1 117126180 117126211 -80069221 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1478 4752 105 6 38 chr1 117126277 117127129 -80068303 + RLTR13D2 LTR ERVK 1 1023 0 2 1478 252 226 18 110 chr1 117127164 117127383 -80068049 + RMER17C LTR ERVK 76 274 -136 2 1478 493 286 35 14 chr1 117127531 117127673 -80067759 - B3A SINE B2 -53 145 1 2 1478 22 56 0 0 chr1 117127849 117127885 -80067547 + AT_rich Low_complexity Low_complexity 1 36 0 2 1478 30 27 0 0 chr1 117127918 117127955 -80067477 + AT_rich Low_complexity Low_complexity 1 37 0 2 1478 383 349 84 51 chr1 117128023 117128201 -80067231 + B3A SINE B2 5 188 -10 2 1478 255 318 75 24 chr1 117128683 117128828 -80066604 - MIRb SINE MIR -109 159 8 2 1478 198 419 0 9 chr1 117129207 117129313 -80066119 + MIRc SINE MIR 50 154 -114 2 1478 834 287 114 20 chr1 117129446 117129818 -80065614 - RLTR20B3 LTR ERVK -13 564 141 2 1478 365 344 38 8 chr1 117131350 117131482 -80063950 - RSINE1 SINE B4 -18 147 12 2 1478 2340 218 75 23 chr1 117131555 117131862 -80063570 - RMER6C LTR ERVK -2 688 377 2 1478 899 42 0 8 chr1 117131862 117131983 -80063449 + (TC)n Simple_repeat Simple_repeat 2 121 0 2 1478 2340 218 75 23 chr1 117131983 117132329 -80063103 - RMER6C LTR ERVK -314 376 1 2 1478 264 309 85 69 chr1 117132480 117132668 -80062764 + MLT1E1 LTR MaLR 415 605 -49 2 1478 2144 268 29 32 chr1 117132835 117133484 -80061948 - Lx7 LINE L1 -957 6739 6093 2 1478 1510 249 35 32 chr1 117133548 117133950 -80061482 - MTB_Mm LTR MaLR -4 403 1 2 1478 1849 210 44 9 chr1 117133951 117134509 -80060923 - Lx7 LINE L1 -1685 6011 5438 2 1478 2874 46 11 3 chr1 117134511 117134878 -80060554 + L1Md_F3 LINE L1 6215 6584 0 2 1478 398 238 99 33 chr1 117134957 117135109 -80060323 - Lx7 LINE L1 -450 5430 5269 2 1478 819 105 0 0 chr1 117135109 117135233 -80060199 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 2 1478 7737 142 34 10 chr1 117135240 117136700 -80058732 - Lx3A LINE L1 -7 6974 5470 2 1478 2709 208 82 27 chr1 117137426 117138133 -80057299 + RLTR22_Mur LTR ERVK 1 746 -1102 2 1478 746 97 9 0 chr1 117138135 117138248 -80057184 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 2 1478 3634 206 43 25 chr1 117138419 117139202 -80056230 + RMER19B LTR ERVK 94 890 -12 2 1478 472 341 22 22 chr1 117139435 117139618 -80055814 - B4A SINE B4 -4 288 106 2 1478 22 88 0 0 chr1 117139669 117139726 -80055706 + AT_rich Low_complexity Low_complexity 1 57 0 2 1478 6695 142 26 21 chr1 117139752 117140885 -80054547 + Lx3B LINE L1 5742 6880 -93 2 1478 21 57 0 0 chr1 117140893 117140928 -80054504 + AT_rich Low_complexity Low_complexity 1 35 0 2 1478 620 328 79 45 chr1 117140933 117141284 -80054148 - MTE2a LTR MaLR -18 401 30 2 1478 578 305 14 9 chr1 117141590 117141805 -80053627 - B3 SINE B2 0 216 1 2 1478 182 250 16 32 chr1 117141866 117141928 -80053504 + L3 LINE CR1 3561 3621 -868 2 1478 407 291 223 5 chr1 117142164 117142388 -80053044 + RMER15 LTR ERVL 302 574 -1 2 1478 279 190 0 0 chr1 117142622 117142680 -80052752 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2 1478 633 361 43 66 chr1 117142712 117143059 -80052373 + ORR1E LTR MaLR 19 357 -2 2 1478 256 327 19 19 chr1 117143191 117143297 -80052135 + MLT1D LTR MaLR 33 138 -367 2 1478 441 0 0 0 chr1 117144233 117144282 -80051150 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 1478 522 0 0 0 chr1 117144655 117144713 -80050719 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1478 375 23 0 0 chr1 117144713 117144756 -80050676 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1478 280 329 76 107 chr1 117144785 117145024 -80050408 + B4 SINE B4 68 288 -4 2 1478 264 328 149 57 chr1 117145092 117145354 -80050078 - L2 LINE L2 -470 2949 2664 2 1478 31 26 0 0 chr1 117146111 117146149 -80049283 + AT_rich Low_complexity Low_complexity 1 38 0 2 1478 225 0 0 0 chr1 117146149 117146174 -80049258 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2 1478 31 0 0 0 chr1 117146203 117146234 -80049198 + AT_rich Low_complexity Low_complexity 1 31 0 2 1478 573 91 0 0 chr1 117146603 117146680 -80048752 + L1Md_F2 LINE L1 5510 5586 -297 2 1478 7583 65 10 8 chr1 117146681 117147674 -80047758 + L1Md_F2 LINE L1 5588 6582 0 2 1478 322 312 0 9 chr1 117147752 117147862 -80047570 + Lx9 LINE L1 6616 6724 -920 2 1478 5020 58 6 3 chr1 117147875 117148518 -80046914 - L1Md_F2 LINE L1 -12 6570 5926 2 1478 24 32 0 0 chr1 117149074 117149105 -80046327 + AT_rich Low_complexity Low_complexity 1 31 0 2 1478 397 364 53 0 chr1 117149109 117149260 -80046172 + RSINE1 SINE B4 7 165 0 2 1478 185 65 0 31 chr1 117149268 117149300 -80046132 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1478 320 285 185 88 chr1 117149368 117149676 -80045756 - RLTR22_Mur LTR ERVK 0 1848 1511 2 1478 34 24 0 0 chr1 117149693 117149734 -80045698 + AT_rich Low_complexity Low_complexity 1 41 0 2 1478 20036 190 32 18 chr1 117149749 117152912 -80042520 - Lx2B LINE L1 -74 6926 3643 2 1478 378 121 0 0 chr1 117152912 117152978 -80042454 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1478 20036 193 49 18 chr1 117152978 117155798 -80039634 - Lx2B LINE L1 -2244 3642 799 2 1478 180 0 0 0 chr1 117155858 117155878 -80039554 + (TATG)n Simple_repeat Simple_repeat 1 20 0 2 1478 2056 267 24 109 chr1 117156280 117157121 -80038311 - RLTR22_Mur LTR ERVK -1076 772 4 2 1478 276 111 0 0 chr1 117158113 117158158 -80037274 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1478 577 368 12 0 chr1 117158274 117158440 -80036992 - ID_B1 SINE B4 -53 171 4 2 1478 822 130 61 0 chr1 117158738 117158869 -80036563 + B1_Mus2 SINE Alu 1 139 -8 2 1478 391 35 35 0 chr1 117158869 117158926 -80036506 + (CAA)n Simple_repeat Simple_repeat 2 60 0 2 1478 414 0 0 0 chr1 117159226 117159272 -80036160 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1478 614 279 67 21 chr1 117160081 117160275 -80035157 + MT2A LTR ERVL 6 208 -325 2 1478 192 91 22 43 chr1 117160281 117160327 -80035105 + T-rich Low_complexity Low_complexity 3 47 0 2 1478 1224 122 87 9 chr1 117160935 117161201 -80034231 - L1VL2 LINE L1 -632 3282 3016 2 1478 421 17 17 17 chr1 117161205 117161264 -80034168 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1478 5426 120 7 17 chr1 117161280 117162827 -80032605 - L1VL2 LINE L1 -1800 2114 582 2 1478 1059 274 63 0 chr1 117162828 117163145 -80032287 + MT2A LTR ERVL 197 533 0 2 1478 23 0 0 0 chr1 117163358 117163381 -80032051 + AT_rich Low_complexity Low_complexity 1 23 0 2 1478 7089 89 9 3 chr1 117163537 117164837 -80030595 - L1Md_F2 LINE L1 0 6582 5273 2 1478 204 97 0 0 chr1 117165023 117165054 -80030378 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1478 258 32 0 0 chr1 117165078 117165109 -80030323 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1478 327 359 60 93 chr1 117165117 117165418 -80030014 - B4 SINE B4 0 292 2 2 1478 654 154 8 8 chr1 117166147 117166278 -80029154 - Lx LINE L1 -1 6653 6523 2 1478 218 330 71 50 chr1 117166574 117166673 -80028759 - B1F SINE Alu -39 110 10 2 1478 1017 149 23 11 chr1 117166712 117166984 -80028448 + (TAGA)n Simple_repeat Simple_repeat 1 275 0 2 1478 398 248 18 54 chr1 117167241 117167352 -80028080 + MTE2b LTR MaLR 273 379 0 2 1478 4877 177 33 22 chr1 117167478 117168115 -80027317 - RMER17B LTR ERVK 0 958 307 2 1478 198 0 0 0 chr1 117168115 117168137 -80027295 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1478 4877 177 33 22 chr1 117168137 117168447 -80026985 - RMER17B LTR ERVK -652 306 2 2 1478 306 0 0 0 chr1 117168767 117168801 -80026631 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1478 541 315 29 53 chr1 117168879 117169085 -80026347 + B4A SINE B4 10 212 -80 2 1478 405 0 0 0 chr1 117169085 117169130 -80026302 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1478 541 315 29 53 chr1 117169130 117169168 -80026264 + B4A SINE B4 213 248 -44 2 1478 486 49 0 0 chr1 117170525 117170586 -80024846 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 1478 246 148 64 24 chr1 117170696 117170821 -80024611 + (TAGA)n Simple_repeat Simple_repeat 1 130 0 2 1478 221 156 39 13 chr1 117170901 117170979 -80024453 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2 1478 384 111 0 0 chr1 117171218 117171290 -80024142 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1478 249 212 15 29 chr1 117171293 117171361 -80024071 + (TATATG)n Simple_repeat Simple_repeat 1 67 0 2 1478 545 343 10 62 chr1 117171363 117171668 -80023764 - B4A SINE B4 0 292 4 2 1478 827 365 20 45 chr1 117172676 117173032 -80022400 + ORR1E LTR MaLR 9 355 -4 2 1478 234 196 0 0 chr1 117173508 117173554 -80021878 + T-rich Low_complexity Low_complexity 2 47 0 2 1478 409 302 71 0 chr1 117173598 117173724 -80021708 + Lx9 LINE L1 7058 7192 -452 2 1478 333 384 52 19 chr1 117174157 117174465 -80020967 - L1MEc LINE L1 -3181 3138 2821 2 1478 312 239 44 44 chr1 117174807 117174921 -80020511 - L1MEc LINE L1 -5986 414 301 2 1478 7233 6 0 0 chr1 117175285 117176088 -80019344 - L1Md_T LINE L1 -1 6581 5779 2 1478 3089 215 5 5 chr1 117176270 117176895 -80018537 + Lx LINE L1 6019 6643 -11 2 1478 206 258 0 15 chr1 117176984 117177051 -80018381 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 2 1478 788 291 57 93 chr1 117177158 117177545 -80017887 - MTEa LTR MaLR -6 373 1 2 1478 230 269 17 42 chr1 117177609 117177729 -80017703 - L1MC LINE L1 -1552 4594 4478 2 184 4955 254 57 5 chr1 117177902 117179538 -80015894 + Lx6 LINE L1 4228 5964 -1496 2 1479 547 223 9 9 chr1 117179696 117179809 -80015623 - RMER13B LTR ERVK -171 737 625 2 1479 466 273 7 29 chr1 117179816 117179952 -80015480 + Lx6 LINE L1 6872 7004 -456 2 1479 533 350 52 62 chr1 117180016 117180342 -80015090 - Lx8 LINE L1 -519 6954 6627 2 1479 4294 79 9 9 chr1 117180342 117180920 -80014512 - L1Md_F2 LINE L1 -12 6570 5993 2 1479 533 350 52 62 chr1 117180920 117181075 -80014357 - Lx8 LINE L1 -847 6626 6478 2 1479 198 143 0 0 chr1 117181859 117181894 -80013538 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1479 237 306 0 0 chr1 117181901 117181963 -80013469 + GA-rich Low_complexity Low_complexity 4 65 0 3 1479 480 335 79 0 chr1 117182975 117183127 -80012305 - B3A SINE B2 -17 181 18 3 1479 631 289 35 70 chr1 117183486 117183523 -80011909 - B3A SINE B2 -4 194 155 3 1479 273 29 0 0 chr1 117183523 117183557 -80011875 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1479 631 289 35 70 chr1 117183557 117183720 -80011712 - B3A SINE B2 -44 154 1 3 1479 22 0 0 0 chr1 117183727 117183749 -80011683 + AT_rich Low_complexity Low_complexity 1 22 0 3 1479 22667 190 71 15 chr1 117183749 117184953 -80010479 - Lx4A LINE L1 -1 7057 5776 3 1479 2205 86 7 0 chr1 117184953 117185257 -80010175 - L1_Mus2 LINE L1 -1 6565 6260 3 1479 22667 148 55 26 chr1 117185257 117187760 -80007672 - Lx4A LINE L1 -102 5775 3210 3 1479 621 0 0 0 chr1 117187760 117187829 -80007603 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1479 22667 148 55 26 chr1 117187829 117188935 -80006497 - Lx4A LINE L1 -2668 3209 2071 3 1479 246 32 0 0 chr1 117188935 117188966 -80006466 + (TGG)n Simple_repeat Simple_repeat 1 31 0 3 1479 480 18 0 0 chr1 117188968 117189025 -80006407 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1479 22667 150 50 26 chr1 117189025 117189946 -80005486 - Lx4A LINE L1 -3807 2070 1115 3 1479 3015 104 36 2 chr1 117189946 117190388 -80005044 - L1_Mus3 LINE L1 -9 6629 6173 3 1479 4592 167 15 26 chr1 117190388 117190991 -80004441 - Lx4A LINE L1 -5972 1114 511 3 1479 820 317 68 57 chr1 117191026 117191394 -80004038 - MTE2b LTR MaLR -7 372 1 3 1479 694 211 27 0 chr1 117191771 117191918 -80003514 - URR1A DNA MER1_type 0 226 76 3 1479 415 339 57 9 chr1 117191989 117192218 -80003214 - L1MC4 LINE L1 -5019 1196 957 3 1479 907 149 6 6 chr1 117192219 117192388 -80003044 + CT-rich Low_complexity Low_complexity 1 169 0 3 1479 352 337 119 28 chr1 117192390 117192567 -80002865 - ID_B1 SINE B4 0 224 32 3 1479 22 56 0 0 chr1 117192757 117192793 -80002639 + AT_rich Low_complexity Low_complexity 1 36 0 3 1479 27 29 0 0 chr1 117193716 117193750 -80001682 + AT_rich Low_complexity Low_complexity 1 34 0 3 1479 1459 260 54 24 chr1 117194036 117194420 -80001012 + MTD LTR MaLR 1 367 -12 3 1479 24 0 0 0 chr1 117194439 117194463 -80000969 + AT_rich Low_complexity Low_complexity 1 24 0 3 1479 3613 113 8 4 chr1 117194693 117195216 -80000216 + L1_Mus3 LINE L1 6102 6626 -12 3 1479 344 255 31 31 chr1 117195350 117195447 -79999985 + ORR1E LTR MaLR 88 184 -175 3 1479 24 85 0 0 chr1 117195465 117195524 -79999908 + AT_rich Low_complexity Low_complexity 1 59 0 3 1479 371 348 18 0 chr1 117195656 117195768 -79999664 - B4A SINE B4 -177 115 2 3 1479 649 280 0 56 chr1 117196288 117196485 -79998947 - B3A SINE B2 0 198 13 3 1479 186 43 0 0 chr1 117196912 117196935 -79998497 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 3 1479 25 31 0 0 chr1 117197012 117197044 -79998388 + AT_rich Low_complexity Low_complexity 1 32 0 3 1479 369 0 0 0 chr1 117197057 117197098 -79998334 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1479 270 411 18 0 chr1 117197130 117197242 -79998190 - RSINE1 SINE B4 -49 116 3 3 1479 186 103 0 0 chr1 117197489 117197518 -79997914 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1479 450 353 57 36 chr1 117197923 117198170 -79997262 - B4 SINE B4 -22 270 19 3 1479 335 296 55 94 chr1 117198274 117198528 -79996904 + Lx8 LINE L1 7226 7469 -4 3 1479 549 113 75 0 chr1 117198536 117198642 -79996790 + MYSERV16_I-int LTR ERVK 1071 1184 -1142 3 1479 37479 50 0 3 chr1 117198642 117204921 -79990511 - L1Md_T LINE L1 -2 6583 224 3 1479 27 92 0 0 chr1 117205029 117205105 -79990327 + AT_rich Low_complexity Low_complexity 1 76 0 3 1479 230 229 0 16 chr1 117205608 117205670 -79989762 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1479 283 379 9 0 chr1 117205946 117206062 -79989370 + MER44D DNA MER2_type 2 118 -587 3 1479 444 19 0 0 chr1 117206149 117206202 -79989230 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1479 945 293 64 10 chr1 117206210 117206507 -79988925 - MTE2b LTR MaLR -13 366 54 3 1479 255 341 79 47 chr1 117206686 117206901 -79988531 - Lx8 LINE L1 -194 7279 7058 3 1479 238 234 35 47 chr1 117206912 117206997 -79988435 - ORR1E LTR MaLR -59 311 228 3 1479 277 255 147 28 chr1 117207069 117207178 -79988254 - ORR1E LTR MaLR -237 122 1 3 1479 4201 48 21 0 chr1 117207262 117207787 -79987645 - L1Md_F2 LINE L1 -1 6581 6046 3 1479 480 35 0 0 chr1 117208039 117208097 -79987335 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1479 412 111 0 40 chr1 117209060 117209135 -79986297 - B1_Mur4 SINE Alu 0 150 79 3 1479 27 0 0 0 chr1 117209135 117209162 -79986270 + AT_rich Low_complexity Low_complexity 1 27 0 3 1479 718 287 139 9 chr1 117209313 117209651 -79985781 + Lx9 LINE L1 7216 7597 -47 3 1479 342 0 0 0 chr1 117209731 117209769 -79985663 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1479 720 43 0 0 chr1 117209769 117209860 -79985572 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1479 347 286 43 18 chr1 117209938 117210102 -79985330 + Lx8 LINE L1 6787 6954 -519 3 1479 597 328 31 21 chr1 117210569 117210762 -79984670 + B3 SINE B2 1 195 -21 3 1479 7605 132 8 17 chr1 117211320 117213152 -79982280 + Lx2 LINE L1 549 2359 -1555 3 1479 396 0 0 0 chr1 117213152 117213196 -79982236 + (GAA)n Simple_repeat Simple_repeat 2 45 0 3 1479 7605 123 12 22 chr1 117213196 117213282 -79982150 + Lx2 LINE L1 2360 2451 -1463 3 1479 4899 73 20 0 chr1 117213282 117213926 -79981506 - L1Md_F2 LINE L1 -6 6576 5920 3 1479 7605 140 13 31 chr1 117213926 117214060 -79981372 + Lx2 LINE L1 2452 2559 -3327 3 1479 7383 78 4 11 chr1 117214060 117215061 -79980371 + L1Md_F2 LINE L1 5588 6581 -1 3 1479 6381 195 16 61 chr1 117215061 117215344 -79980088 + Lx2 LINE L1 2560 2805 -3081 3 1479 5604 154 6 27 chr1 117215337 117216761 -79978671 + Lx2 LINE L1 5104 6504 -493 3 1479 965 99 0 0 chr1 117216754 117216905 -79978527 - MusHAL1 LINE L1 -2364 348 198 3 1479 368 329 17 81 chr1 117216901 117217034 -79978398 - L1_Rod LINE L1 -1289 4591 4470 3 1479 441 0 0 0 chr1 117217034 117217083 -79978349 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1479 368 329 17 81 chr1 117217083 117217109 -79978323 - L1_Rod LINE L1 -1411 4469 4466 3 1479 1088 109 0 0 chr1 117217109 117217256 -79978176 - B1_Mm SINE Alu 0 147 1 3 1479 462 274 31 42 chr1 117217256 117217562 -79977870 - L1_Rod LINE L1 -1415 4465 4155 3 1479 198 26 0 71 chr1 117217565 117217607 -79977825 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1479 1061 109 0 7 chr1 117217609 117217756 -79977676 + B1_Mus2 SINE Alu 1 146 -1 3 1479 312 89 5 131 chr1 117217765 117217971 -79977461 + A-rich Low_complexity Low_complexity 1 180 0 3 1479 1187 249 48 34 chr1 117217984 117218337 -79977095 - L1_Rod LINE L1 -1692 4155 3798 3 1479 871 176 20 0 chr1 117218373 117218526 -79976906 + Lx2 LINE L1 6489 6644 -353 3 1479 1090 168 42 0 chr1 117218524 117218738 -79976694 + Lx2 LINE L1 6775 6997 0 3 1479 219 114 0 0 chr1 117219101 117219136 -79976296 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 3 1479 258 152 0 0 chr1 117219137 117219196 -79976236 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1479 282 38 38 19 chr1 117219231 117219284 -79976148 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 1479 714 330 58 45 chr1 117220256 117220567 -79974865 + MTE2a LTR MaLR 63 377 -2 3 1479 228 331 111 16 chr1 117220825 117220951 -79974481 + B1_Mm SINE Alu 2 139 -8 3 1479 237 303 0 0 chr1 117221011 117221087 -79974345 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1479 234 116 0 0 chr1 117221205 117221248 -79974184 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 1479 238 333 35 0 chr1 117221339 117221426 -79974006 + B4A SINE B4 4 93 -199 3 1479 369 0 0 0 chr1 117221607 117221648 -79973784 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1479 351 0 0 0 chr1 117221648 117221687 -79973745 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1479 319 316 104 25 chr1 117221687 117221927 -79973505 + L1MEg LINE L1 934 1192 -4892 3 1479 768 80 0 0 chr1 117222627 117222740 -79972692 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1479 555 381 59 16 chr1 117222755 117223011 -79972421 - B4A SINE B4 -1 291 25 3 1479 324 0 0 0 chr1 117223414 117223450 -79971982 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1479 266 231 86 9 chr1 117223834 117223939 -79971493 + L1M2 LINE L1 2452 2564 -4285 3 1479 1273 52 11 6 chr1 117224298 117224472 -79970960 + (GGGAA)n Simple_repeat Simple_repeat 2 176 0 3 1479 189 0 0 0 chr1 117224472 117224493 -79970939 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 3 1479 312 342 60 33 chr1 117224493 117224644 -79970788 + HAL1-3A_ME LINE L1 2284 2438 -420 3 1479 3688 214 66 34 chr1 117224705 117224895 -79970537 + L1_Mur3 LINE L1 307 442 -7286 3 1479 2781 162 4 0 chr1 117224895 117225359 -79970073 - Lx2 LINE L1 0 6997 6532 3 1479 3688 228 44 61 chr1 117225359 117226045 -79969387 + L1_Mur3 LINE L1 443 1124 -6604 3 1479 270 0 0 0 chr1 117226045 117226075 -79969357 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1479 3688 188 83 75 chr1 117226075 117226423 -79969009 + L1_Mur3 LINE L1 1125 1455 -4425 3 1479 1116 88 0 0 chr1 117226423 117226570 -79968862 - B1_Mus1 SINE Alu 0 148 2 3 1479 2353 180 91 78 chr1 117226570 117227031 -79968401 + L1_Mur3 LINE L1 1456 1961 -3919 3 1479 968 308 75 25 chr1 117227022 117227955 -79967477 + L1_Mur3 LINE L1 4800 5824 -479 3 1479 1337 82 16 21 chr1 117228083 117228271 -79967161 + B2_Mm2 SINE B2 3 189 -6 3 1479 1025 212 37 114 chr1 117228479 117228750 -79966682 - RLTR41 LTR ERV1 -135 311 62 3 1479 1163 40 0 7 chr1 117228800 117228950 -79966482 + (TCTCCC)n Simple_repeat Simple_repeat 3 151 0 3 1479 746 325 57 36 chr1 117228950 117229231 -79966201 - B4A SINE B4 0 292 6 3 1479 495 0 0 0 chr1 117229241 117229296 -79966136 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1479 246 155 40 40 chr1 117230076 117230150 -79965282 + T-rich Low_complexity Low_complexity 2 75 0 3 1479 238 325 110 127 chr1 117230291 117230583 -79964849 - B4A SINE B4 0 292 6 3 1479 2097 126 3 58 chr1 117230835 117231180 -79964252 + ORR1A2 LTR MaLR 1 326 -1 3 1479 8796 186 47 17 chr1 117231180 117233087 -79962345 + ORR1A2-int LTR MaLR 1 1963 0 3 1479 1943 142 3 81 chr1 117233087 117233433 -79961999 + ORR1A2 LTR MaLR 1 319 -8 3 1479 479 333 88 36 chr1 117233688 117233993 -79961439 - LTR48 LTR ERV1 -24 763 443 3 1479 291 339 57 0 chr1 117234132 117234256 -79961176 - MLT1E1A LTR MaLR -28 652 522 3 1479 353 378 44 13 chr1 117234317 117234475 -79960957 + RSINE1 SINE B4 3 165 0 3 1479 23 0 0 0 chr1 117234478 117234501 -79960931 + AT_rich Low_complexity Low_complexity 1 23 0 3 1479 417 245 148 69 chr1 117234949 117235212 -79960220 + L1MD2 LINE L1 5700 5989 -370 3 1479 24 0 0 0 chr1 117235324 117235348 -79960084 + AT_rich Low_complexity Low_complexity 1 24 0 3 1479 296 282 119 8 chr1 117235481 117235599 -79959833 + Lx8 LINE L1 6993 7123 -350 4 1479 8646 128 23 6 chr1 117236269 117237332 -79958100 - Lx3A LINE L1 0 6981 5904 4 1479 249 33 0 0 chr1 117237332 117237362 -79958070 + (TTC)n Simple_repeat Simple_repeat 1 30 0 4 1479 1032 156 0 0 chr1 117237362 117237542 -79957890 + CT-rich Low_complexity Low_complexity 1 180 0 4 1479 213 39 0 0 chr1 117237542 117237567 -79957865 + (CTG)n Simple_repeat Simple_repeat 2 27 0 4 1479 23541 144 25 47 chr1 117237567 117238735 -79956697 - Lx3A LINE L1 -1078 5903 4741 4 1479 216 0 0 0 chr1 117238735 117238759 -79956673 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1479 23541 150 25 61 chr1 117238759 117240395 -79955037 - Lx3A LINE L1 -1146 4740 3133 4 1479 4430 82 15 2 chr1 117240395 117241007 -79954425 - L1_Mus3 LINE L1 -10 6628 6009 4 1479 23541 150 25 61 chr1 117241007 117241089 -79954343 - L1_Mur1 LINE L1 -2754 3132 3132 4 1479 239 50 50 0 chr1 117241089 117241129 -79954303 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1479 23541 150 25 61 chr1 117241129 117241143 -79954289 - L1_Mur1 LINE L1 -2754 3132 3132 4 1479 441 0 0 0 chr1 117241143 117241192 -79954240 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1479 23541 144 24 55 chr1 117241192 117243216 -79952216 - Lx3A LINE L1 -2754 3132 1152 4 1479 28155 130 8 12 chr1 117243232 117249817 -79945615 - L1_Mus2 LINE L1 0 6566 363 4 1479 6350 140 43 10 chr1 117249816 117251750 -79943682 - L1_Mur1 LINE L1 -3649 2237 231 4 1479 2933 181 43 0 chr1 117252143 117252702 -79942730 - MT2B2 LTR ERVL 0 584 2 4 1479 465 154 0 0 chr1 117253296 117253387 -79942045 + (TG)n Simple_repeat Simple_repeat 1 91 0 4 1479 821 280 27 125 chr1 117253403 117253809 -79941623 + MTEb LTR MaLR 8 379 0 4 1479 281 296 55 16 chr1 117254225 117254352 -79941080 + Lx9 LINE L1 5836 5967 -1677 4 1479 1510 304 106 60 chr1 117254589 117255256 -79940176 + Lx9 LINE L1 6384 7084 -560 4 1479 5265 116 68 8 chr1 117255256 117256111 -79939321 - RMER17A2 LTR ERVK 0 906 1 4 1479 1510 304 106 60 chr1 117256111 117256345 -79939087 + Lx9 LINE L1 7085 7327 -317 4 1479 295 195 0 33 chr1 117256352 117256417 -79939015 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 4 1479 938 127 7 7 chr1 117256417 117256560 -79938872 - B1_Mus1 SINE Alu -5 143 1 4 1479 295 195 0 33 chr1 117256560 117256584 -79938848 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1479 297 333 0 0 chr1 117256591 117256690 -79938742 + Lx9 LINE L1 7318 7416 -228 4 1479 219 36 0 0 chr1 117256690 117256718 -79938714 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1479 246 62 0 0 chr1 117256720 117256752 -79938680 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1479 618 297 125 19 chr1 117258066 117258330 -79937102 + Lx8 LINE L1 6791 7082 -391 4 1479 1102 197 60 16 chr1 117258932 117258968 -79936464 - Lx LINE L1 -1 6653 6621 4 1479 189 0 0 0 chr1 117258968 117258989 -79936443 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 4 1479 1124 175 76 0 chr1 117258989 117259075 -79936357 - Lx2 LINE L1 -28 6969 6868 4 1479 267 31 0 0 chr1 117259075 117259107 -79936325 + (CCCA)n Simple_repeat Simple_repeat 2 33 0 4 1479 3653 183 148 6 chr1 117259107 117259930 -79935502 - Lx2 LINE L1 -130 6867 5938 4 1479 324 281 12 0 chr1 117259930 117260012 -79935420 + B3 SINE B2 57 139 -77 4 1479 283 301 12 0 chr1 117260005 117260088 -79935344 - ORR1D2 LTR MaLR -286 84 1 4 1479 427 255 63 9 chr1 117260200 117260311 -79935121 + MERVL_2A-int LTR ERVL 4918 5034 -727 4 1479 277 267 0 0 chr1 117260320 117260380 -79935052 - B3A SINE B2 -134 64 5 4 1479 1293 275 40 42 chr1 117260566 117260869 -79934563 + MERVL_2A-int LTR ERVL 5043 5352 -409 4 1479 5184 55 0 0 chr1 117260869 117261511 -79933921 + L1Md_F2 LINE L1 5929 6570 -12 4 1479 1293 234 60 91 chr1 117261511 117261823 -79933609 + MERVL_2A-int LTR ERVL 5301 5628 -133 4 1479 270 246 0 40 chr1 117261823 117261899 -79933533 + ORR1A3-int LTR MaLR 567 639 -1324 4 1479 719 312 62 12 chr1 117261969 117262228 -79933204 + MT2A LTR ERVL 1 272 -261 4 1479 351 262 63 20 chr1 117262245 117262369 -79933063 + MTD LTR MaLR 11 139 -261 4 1479 336 111 0 0 chr1 117262371 117262425 -79933007 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1479 228 350 0 12 chr1 117262793 117262874 -79932558 - MLT1D LTR MaLR -168 337 258 4 1479 6032 87 4 1 chr1 117262939 117263765 -79931667 - L1_Mus1 LINE L1 0 6567 5740 4 1479 699 139 0 0 chr1 117263774 117263889 -79931543 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 4 1479 5786 149 24 17 chr1 117263914 117264939 -79930493 - Lx3A LINE L1 0 6981 5949 4 1479 537 71 0 39 chr1 117264955 117265058 -79930374 + (GTTTG)n Simple_repeat Simple_repeat 1 99 0 4 1479 1088 88 0 20 chr1 117265062 117265212 -79930220 - B1_Mus1 SINE Alu -1 147 1 4 1479 4170 175 3 20 chr1 117265212 117265940 -79929492 - Lx3A LINE L1 -1008 5965 5268 4 1479 1604 26 11 0 chr1 117265940 117266130 -79929302 - B2_Mm1a SINE B2 0 193 2 4 1479 4170 186 1 37 chr1 117266130 117266337 -79929095 - Lx3A LINE L1 -619 5267 5064 4 1479 560 84 12 0 chr1 117266386 117266469 -79928963 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 4 1479 207 246 0 0 chr1 117266464 117266521 -79928911 + G-rich Low_complexity Low_complexity 4 60 0 4 1479 994 133 12 0 chr1 117266529 117266702 -79928730 + (GAGAA)n Simple_repeat Simple_repeat 3 177 0 4 1479 328 259 47 13 chr1 117267002 117267151 -79928281 + L1_Mur1 LINE L1 3488 3641 -2245 4 1479 535 296 90 19 chr1 117267202 117267470 -79927962 + Lx8 LINE L1 7186 7472 -1 4 1479 4312 62 0 7 chr1 117267560 117268114 -79927318 + L1Md_F3 LINE L1 5037 5586 -297 4 1479 8164 43 3 0 chr1 117268115 117269100 -79926332 + L1Md_F3 LINE L1 5588 6575 -9 4 1479 646 279 106 29 chr1 117269120 117269563 -79925869 + L1_Mur3 LINE L1 3634 4110 -1770 4 1479 4274 24 0 0 chr1 117271704 117272197 -79923235 + MT2_Mm LTR ERVL 1 493 0 4 1479 262 276 29 39 chr1 117272303 117272405 -79923027 + RMER15 LTR ERVL 16 116 -459 4 1479 898 299 161 14 chr1 117272432 117272781 -79922651 + MTD LTR MaLR 7 406 -13 4 1479 402 295 262 26 chr1 117272820 117273053 -79922379 + RMER15 LTR ERVL 274 561 -14 4 1479 475 368 31 3 chr1 117273459 117273646 -79921786 + B4A SINE B4 10 212 -80 4 1479 1700 265 31 17 chr1 117273647 117274062 -79921370 - MTC LTR MaLR 0 421 1 4 1479 265 342 0 12 chr1 117274063 117274143 -79921289 + B4A SINE B4 210 288 -4 4 1479 21 57 0 0 chr1 117274383 117274418 -79921014 + AT_rich Low_complexity Low_complexity 1 35 0 4 1479 13451 194 16 18 chr1 117275131 117276273 -79919159 + L1_Mus4 LINE L1 1934 3059 -2824 4 1479 3475 132 58 13 chr1 117276273 117276873 -79918559 + L1_Mus3 LINE L1 6004 6630 -8 4 1479 13451 166 39 10 chr1 117276873 117280347 -79915085 + L1_Mus4 LINE L1 3060 6629 -7 4 1479 249 288 116 20 chr1 117280349 117280603 -79914829 + Arthur1B DNA Tip100 928 1209 -16 4 1479 324 336 8 24 chr1 117280836 117280961 -79914471 - Lx8 LINE L1 -129 7344 7222 4 1479 324 0 0 0 chr1 117280979 117281015 -79914417 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1479 323 407 28 0 chr1 117281017 117281162 -79914270 - RSINE1 SINE B4 -14 151 3 4 1479 2974 68 5 8 chr1 117281266 117281663 -79913769 + MTA_Mm LTR MaLR 1 396 0 4 1479 440 369 28 35 chr1 117281875 117282086 -79913346 - B3A SINE B2 0 216 1 4 1479 6799 192 25 31 chr1 117282121 117284031 -79911401 - Lx4A LINE L1 0 7058 5159 4 1479 1678 165 16 31 chr1 117284031 117284350 -79911082 + RLTR9E LTR ERVK 96 409 0 4 1479 4083 187 48 96 chr1 117284352 117284842 -79910590 + MMETn-int LTR ERVK 2 430 -4414 4 1479 624 65 0 36 chr1 117284842 117284953 -79910479 - L1Md_F3 LINE L1 0 6584 6478 4 1479 4083 187 48 96 chr1 117284953 117285683 -79909749 + MMETn-int LTR ERVK 431 1163 -3681 4 1479 1457 230 206 29 chr1 117285688 117286164 -79909268 + ETnERV2-int LTR ERVK 2428 2987 -4419 4 1479 3634 127 34 4 chr1 117286180 117287163 -79908269 + ETnERV2-int LTR ERVK 3441 4504 -2902 4 1479 3986 43 0 8 chr1 117287163 117287654 -79907778 - L1Md_F2 LINE L1 -2 6580 6094 4 1479 3532 114 2 0 chr1 117287656 117288147 -79907285 + ETnERV2-int LTR ERVK 4902 5393 -2013 4 1479 6378 137 25 0 chr1 117288147 117288904 -79906528 + L1_Mus1 LINE L1 4913 5688 -195 4 1479 341 58 19 0 chr1 117288904 117288956 -79906476 + (TAA)n Simple_repeat Simple_repeat 1 53 0 4 1479 6378 100 44 0 chr1 117288956 117289809 -79905623 + L1_Mus1 LINE L1 5689 6565 -2 4 1479 1744 173 80 10 chr1 117289826 117290228 -79905204 - L1_Mur2 LINE L1 -2906 2971 2542 4 1479 1938 80 11 4 chr1 117290228 117290505 -79904927 + RLTR10 LTR ERVK 1 279 -111 4 1479 4022 71 181 148 chr1 117290516 117291437 -79903995 + RLTR10-int LTR ERVK 41 992 -995 4 1479 327 354 7 7 chr1 117291577 117291725 -79903707 + RLTR10-int LTR ERVK 822 969 -5573 4 1479 339 175 0 0 chr1 117291766 117291823 -79903609 + RLTR10-int LTR ERVK 447 503 -6039 4 1479 4872 53 97 8 chr1 117291806 117292723 -79902709 + RLTR10-int LTR ERVK 988 1986 -1 4 1479 2019 58 11 4 chr1 117292723 117293000 -79902432 + RLTR10 LTR ERVK 1 279 -111 4 1479 1189 135 5 15 chr1 117293001 117293196 -79902236 - L1_Mur2 LINE L1 -3330 2547 2355 4 1479 8128 48 0 3 chr1 117293210 117294411 -79901021 - L1Md_F2 LINE L1 -14 6568 5371 4 1479 5630 145 60 8 chr1 117294390 117294694 -79900738 - L1_Mur2 LINE L1 -3494 2383 2050 4 1479 237 65 0 0 chr1 117294694 117294725 -79900707 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1479 5630 157 60 5 chr1 117294725 117296269 -79899163 - L1_Mur2 LINE L1 -3828 2049 425 4 1479 346 342 81 17 chr1 117296439 117296674 -79898758 - ORR1E LTR MaLR -6 353 104 4 1479 282 320 15 1 chr1 117297095 117297247 -79898185 - L1M3 LINE L1 -2707 3436 3280 4 1479 915 125 21 0 chr1 117297347 117297491 -79897941 - B2_Mm2 SINE B2 -35 160 14 4 1479 186 43 0 0 chr1 117297503 117297526 -79897906 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1479 3688 123 21 14 chr1 117297526 117298101 -79897331 + Lx3_Mus LINE L1 6431 7009 0 4 1479 531 232 98 13 chr1 117298113 117298266 -79897166 + B2_Mm2 SINE B2 15 180 -15 4 1479 4473 232 105 20 chr1 117298309 117299795 -79895637 + Lx4B LINE L1 5383 7007 -51 4 1479 23 78 0 0 chr1 117299952 117300003 -79895429 + AT_rich Low_complexity Low_complexity 1 51 0 4 1479 26 0 0 0 chr1 117300195 117300221 -79895211 + AT_rich Low_complexity Low_complexity 1 26 0 4 1479 345 340 133 19 chr1 117301176 117301485 -79893947 + L1ME1 LINE L1 5525 5868 -311 4 1479 350 370 37 57 chr1 117301503 117301801 -79893631 + B4A SINE B4 1 292 0 4 1479 277 379 87 15 chr1 117302321 117302527 -79892905 + B4A SINE B4 6 226 -66 4 1479 464 316 48 53 chr1 117303213 117303420 -79892012 + B4A SINE B4 70 275 -17 4 1479 268 280 11 21 chr1 117304346 117304441 -79890991 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 4 1479 342 129 0 0 chr1 117304471 117304533 -79890899 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1479 328 325 65 8 chr1 117304554 117304678 -79890754 - RLTR25B LTR ERVK 0 1028 898 4 1479 478 257 19 65 chr1 117304667 117304821 -79890611 - RLTR25B LTR ERVK -262 766 620 4 1479 1748 213 30 83 chr1 117305662 117306097 -79889335 - RLTR25B LTR ERVK -616 412 1 4 1479 516 16 0 0 chr1 117306148 117306209 -79889223 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1479 237 167 0 0 chr1 117306210 117306264 -79889168 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1479 352 359 15 15 chr1 117306425 117306558 -79888874 + MTE-int LTR MaLR 1435 1567 -13 4 1479 434 349 28 71 chr1 117306574 117306898 -79888534 + Lx8 LINE L1 6970 7279 -417 4 1479 324 127 0 0 chr1 117306925 117306980 -79888452 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1479 21 36 0 0 chr1 117307066 117307094 -79888338 + AT_rich Low_complexity Low_complexity 1 28 0 4 1479 271 318 130 43 chr1 117307287 117307471 -79887961 - MTE2b LTR MaLR -38 341 142 4 1479 1205 339 88 20 chr1 117307552 117308361 -79887071 - Lx8 LINE L1 -507 6966 6103 5 1479 348 83 0 0 chr1 117308663 117308711 -79886721 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1479 21 0 0 0 chr1 117308711 117308732 -79886700 + AT_rich Low_complexity Low_complexity 1 21 0 5 1479 303 295 162 0 chr1 117308782 117308887 -79886545 - B4A SINE B4 -169 123 2 5 1479 1043 97 7 7 chr1 117309030 117309168 -79886264 + B1_Mm SINE Alu 1 139 -8 5 1479 279 0 0 0 chr1 117309168 117309199 -79886233 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1479 259 223 19 105 chr1 117309311 117309416 -79886016 - B3 SINE B2 -97 98 3 5 1480 516 203 55 80 chr1 117309764 117309927 -79885505 - B3A SINE B2 -1 215 1 5 1480 628 226 82 0 chr1 117310264 117310423 -79885009 - L1_Mur2 LINE L1 -758 5122 4951 5 1480 1468 296 55 41 chr1 117310428 117311087 -79884345 + Lx5 LINE L1 6316 7052 -6 5 1480 3497 223 35 25 chr1 117311091 117312467 -79882965 - L1_Mur2 LINE L1 -3834 2043 644 5 1480 409 318 22 37 chr1 117313461 117313595 -79881837 + ID_B1 SINE B4 77 208 -16 5 1480 351 136 0 0 chr1 117313810 117313869 -79881563 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1480 192 179 0 0 chr1 117313870 117313909 -79881523 + GA-rich Low_complexity Low_complexity 1 39 0 5 1480 333 224 26 13 chr1 117313957 117314034 -79881398 + HAL1-3A_ME LINE L1 1975 2052 -806 5 1480 1175 55 0 7 chr1 117314117 117314265 -79881167 + B1_Mm SINE Alu 1 147 0 5 1480 215 31 31 0 chr1 117314269 117314301 -79881131 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 1480 826 228 10 16 chr1 117315085 117315277 -79880155 - Lx6 LINE L1 -1477 5983 5793 5 1480 2212 278 69 19 chr1 117315273 117315940 -79879492 + Lx6 LINE L1 6758 7457 -3 5 1480 629 312 88 61 chr1 117316020 117316382 -79879050 - MTD LTR MaLR -41 378 7 5 1480 2368 228 69 11 chr1 117316385 117316921 -79878511 + RMER15 LTR ERVL 1 567 -8 5 1480 258 323 30 10 chr1 117317230 117317330 -79878102 + B2_Mm2 SINE B2 1 102 -93 5 1480 390 21 0 0 chr1 117317432 117317479 -79877953 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1480 490 326 138 43 chr1 117317500 117317753 -79877679 + B4A SINE B4 15 291 -1 5 1480 238 298 29 0 chr1 117317803 117317907 -79877525 + L1M1 LINE L1 5802 5908 -392 5 1480 233 340 10 41 chr1 117319009 117319107 -79876325 - RSINE1 SINE B4 -3 162 68 5 1480 573 72 0 0 chr1 117319578 117319661 -79875771 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1480 335 377 34 7 chr1 117319662 117319809 -79875623 - B3A SINE B2 -47 151 1 5 1480 324 302 111 77 chr1 117319878 117320086 -79875346 + Tigger1 DNA MER2_type 2202 2416 -2 5 1480 399 324 173 5 chr1 117320506 117320714 -79874718 - ORR1E LTR MaLR -75 284 42 5 1480 550 103 11 0 chr1 117321263 117321350 -79874082 + L1_Mus2 LINE L1 6093 6180 -386 5 1480 1077 8 0 0 chr1 117321350 117321472 -79873960 + (GAA)n Simple_repeat Simple_repeat 1 122 0 5 1480 476 143 0 23 chr1 117321472 117321558 -79873874 + Lx4B LINE L1 5748 5831 -1227 5 1480 3079 188 6 128 chr1 117321552 117322446 -79872986 - L1_Mm LINE L1 -506 5377 4593 5 1480 8229 175 63 5 chr1 117322443 117324174 -79871258 - Lx LINE L1 -271 6383 4596 5 1480 290 26 0 25 chr1 117324174 117324214 -79871218 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1480 8229 207 96 9 chr1 117324214 117324968 -79870464 - Lx LINE L1 -1282 4595 3709 5 1480 1512 104 16 50 chr1 117324970 117325273 -79870159 - MusHAL1 LINE L1 -2414 298 6 5 1480 449 210 0 1 chr1 117325506 117325608 -79869824 - L1_Rod LINE L1 -482 5758 5605 5 1480 2805 85 31 5 chr1 117325997 117326387 -79869045 + MTB LTR MaLR 1 400 0 5 1480 480 339 70 63 chr1 117326572 117326681 -79868751 + Lx8 LINE L1 7025 7133 -340 5 1480 1272 101 26 0 chr1 117326681 117326870 -79868562 + L1_Mus2 LINE L1 6372 6565 -1 5 1480 480 339 70 63 chr1 117326870 117327204 -79868228 + Lx8 LINE L1 7134 7471 -2 5 1480 410 282 162 0 chr1 117327547 117327689 -79867743 - Lx8 LINE L1 -533 6940 6776 5 1480 1184 249 8 172 chr1 117328317 117328707 -79866725 + RLTR20D LTR ERVK 1 314 -254 5 1480 1375 161 31 0 chr1 117328707 117328968 -79866464 + L1_Mus4 LINE L1 6355 6623 -13 5 1480 1184 249 8 172 chr1 117328968 117329111 -79866321 + RLTR20D LTR ERVK 315 446 -122 5 1480 4214 47 15 0 chr1 117329119 117329648 -79865784 + L1Md_F2 LINE L1 5050 5586 -297 5 1480 8003 47 1 8 chr1 117329649 117330651 -79864781 + L1Md_F2 LINE L1 5588 6582 0 5 1480 349 298 16 66 chr1 117330653 117330775 -79864657 + RLTR20D LTR ERVK 453 568 0 5 1480 28 0 0 0 chr1 117331013 117331041 -79864391 + AT_rich Low_complexity Low_complexity 1 28 0 5 1480 242 329 0 14 chr1 117331160 117331234 -79864198 - B4A SINE B4 -2 290 218 5 1480 466 354 46 91 chr1 117331236 117331733 -79863699 - Lx7 LINE L1 -115 7358 6873 5 1480 508 194 151 0 chr1 117331714 117331853 -79863579 + Lx LINE L1 6430 6589 -65 5 1480 387 0 0 0 chr1 117331923 117331966 -79863466 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1480 2807 297 64 58 chr1 117331995 117332258 -79863174 - L1_Mur3 LINE L1 -637 5243 4983 5 1480 459 63 0 0 chr1 117332258 117332321 -79863111 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1480 2807 298 64 58 chr1 117332321 117334367 -79861065 - L1_Mur3 LINE L1 -898 4982 2969 5 1480 19256 107 5 2 chr1 117334437 117335380 -79860052 - L1_Mus3 LINE L1 -7 6631 5685 5 1480 5443 33 0 0 chr1 117335380 117336017 -79859415 + L1Md_T LINE L1 5946 6582 0 5 1480 19256 173 9 18 chr1 117336017 117340602 -79854830 - L1_Mus3 LINE L1 -199 5687 1291 5 1480 21 36 0 0 chr1 117341117 117341145 -79854287 + AT_rich Low_complexity Low_complexity 1 28 0 5 1480 29 0 0 0 chr1 117341181 117341210 -79854222 + AT_rich Low_complexity Low_complexity 1 29 0 5 1480 6923 91 8 1 chr1 117341370 117342648 -79852784 - L1_Mus2 LINE L1 -2 6564 5279 5 1480 1688 219 36 59 chr1 117342646 117343534 -79851898 - L1_Mus3 LINE L1 -5328 1306 418 5 1480 235 261 0 0 chr1 117343761 117343807 -79851625 + RSINE1 SINE B4 21 66 -99 5 1480 33830 36 1 0 chr1 117343815 117349666 -79845766 + L1Md_T LINE L1 1 5589 -297 5 1480 8984 8 0 0 chr1 117349666 117350662 -79844770 + L1Md_T LINE L1 5590 6585 0 5 1480 266 301 35 24 chr1 117350664 117350749 -79844683 + RSINE1 SINE B4 77 162 -3 5 1480 21 0 0 0 chr1 117350820 117350841 -79844591 + AT_rich Low_complexity Low_complexity 1 21 0 5 1480 186 43 0 0 chr1 117350844 117350867 -79844565 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1480 815 172 0 6 chr1 117350874 117351038 -79844394 + GA-rich Low_complexity Low_complexity 4 166 0 5 1480 655 392 3 11 chr1 117351364 117351650 -79843782 + B4A SINE B4 9 292 0 5 1480 442 103 13 13 chr1 117351672 117351751 -79843681 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1480 1158 257 4 26 chr1 117352264 117352627 -79842805 - MTC LTR MaLR -3 418 1 5 1480 24 0 0 0 chr1 117353275 117353299 -79842133 + AT_rich Low_complexity Low_complexity 1 24 0 5 1480 31159 33 0 0 chr1 117353299 117357983 -79837449 - L1Md_T LINE L1 -1 6581 1897 5 1480 565 283 49 77 chr1 117358499 117358850 -79836582 + RLTR11A2 LTR ERVK 42 394 -47 5 1480 554 80 0 0 chr1 117359978 117360053 -79835379 + B1_Mm SINE Alu 73 147 0 5 1480 335 57 27 41 chr1 117360114 117360187 -79835245 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 5 1480 597 342 35 10 chr1 117360235 117360436 -79834996 - MTE2b LTR MaLR -173 206 1 5 1480 1120 271 225 36 chr1 117362643 117363114 -79832318 + RMER15 LTR ERVL 1 560 -15 5 1480 478 293 77 71 chr1 117363139 117363308 -79832124 - B4A SINE B4 -120 172 3 5 1480 21 0 0 0 chr1 117363826 117363847 -79831585 + AT_rich Low_complexity Low_complexity 1 21 0 5 1480 200 200 0 0 chr1 117363978 117364013 -79831419 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1480 480 326 28 50 chr1 117364129 117364310 -79831122 + B3A SINE B2 22 198 0 5 1480 257 247 10 0 chr1 117364506 117364603 -79830829 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 5 1480 330 295 51 51 chr1 117364603 117364721 -79830711 + MTEa LTR MaLR 260 377 -2 5 1480 1378 185 20 116 chr1 117364737 117365141 -79830291 - ORR1B2 LTR MaLR -2 365 1 5 1480 342 0 0 0 chr1 117365587 117365625 -79829807 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1480 537 273 16 0 chr1 117366025 117366146 -79829286 + B3A SINE B2 3 125 -73 5 1480 600 59 0 0 chr1 117366146 117366231 -79829201 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1480 1667 232 23 72 chr1 117366254 117366779 -79828653 - Lx2B LINE L1 -1 6999 6501 5 1480 3654 176 29 7 chr1 117366919 117367611 -79827821 - Lx4A LINE L1 -221 6837 6131 5 1480 512 267 45 22 chr1 117368185 117368319 -79827113 - ETnERV2-int LTR ERVK -204 7202 7066 5 1480 747 343 10 44 chr1 117369110 117369403 -79826029 + B4A SINE B4 10 292 0 5 1480 488 335 48 27 chr1 117369689 117369876 -79825556 + B3A SINE B2 1 191 -7 5 1480 215 118 0 56 chr1 117369889 117369943 -79825489 + (TATAA)n Simple_repeat Simple_repeat 1 51 0 5 1480 3759 68 32 2 chr1 117370789 117371291 -79824141 - L1Md_F3 LINE L1 -15 6569 6053 5 1480 852 304 28 15 chr1 117372310 117372634 -79822798 - Lx6 LINE L1 -27 7433 7106 5 1480 395 358 40 65 chr1 117372724 117373002 -79822430 + B4A SINE B4 2 272 -20 5 1480 351 78 0 0 chr1 117373021 117373072 -79822360 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1480 253 312 20 50 chr1 117373160 117373261 -79822171 + MTD LTR MaLR 1 98 -323 5 1480 36827 5 0 0 chr1 117373262 117378415 -79817017 + L1Md_A LINE L1 433 5586 -297 5 1480 8990 5 0 0 chr1 117378415 117379411 -79816021 + L1Md_A LINE L1 5587 6582 0 5 1480 644 298 54 27 chr1 117379457 117379643 -79815789 + MTD LTR MaLR 84 274 -145 5 1480 477 333 35 0 chr1 117379935 117380076 -79815356 + RSINE1 SINE B4 12 157 -8 5 1480 394 91 26 0 chr1 117380097 117380174 -79815258 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1480 1634 195 67 42 chr1 117380186 117380402 -79815030 + RMER6D LTR ERVK 5 208 -512 5 1480 5457 54 9 1 chr1 117380402 117381089 -79814343 - L1Md_F3 LINE L1 0 6584 5893 5 1480 1634 195 67 42 chr1 117381089 117381278 -79814154 + RMER6D LTR ERVK 209 420 -300 5 1480 288 261 43 43 chr1 117381379 117381471 -79813961 - B2_Mm2 SINE B2 -96 99 8 5 1480 4455 191 28 36 chr1 117381821 117382903 -79812529 + Lx4B LINE L1 4451 5523 -354 5 1480 1268 136 90 4 chr1 117382899 117383201 -79812231 + Lx3B LINE L1 6610 6978 -3 5 1480 1583 213 0 0 chr1 117383258 117383586 -79811846 + Lx4B LINE L1 5522 5849 -28 5 1480 801 250 46 5 chr1 117383613 117383830 -79811602 + Lx4B LINE L1 6294 6519 -539 5 1480 411 56 0 0 chr1 117383841 117383895 -79811537 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1480 13033 156 9 11 chr1 117383967 117386247 -79809185 + MERVL-int LTR ERVL 2278 4552 -933 6 1480 2173 138 3 0 chr1 117386273 117386599 -79808833 - ORR1A2 LTR MaLR 0 327 1 6 1480 1203 251 26 89 chr1 117386617 117387032 -79808400 - Lx2B LINE L1 -5 6995 6607 6 1480 4424 78 1 0 chr1 117387035 117387925 -79807507 - L1Md_F2 LINE L1 -431 6151 5261 6 1480 4083 107 0 10 chr1 117387925 117388513 -79806919 + L1Md_F2 LINE L1 5989 6570 -12 6 1480 7584 231 247 49 chr1 117388513 117389171 -79806261 + L1_Mur2 LINE L1 942 1636 -4245 6 1480 379 276 19 105 chr1 117389171 117389213 -79806219 + MT2B LTR ERVL 129 156 -445 6 1480 844 121 0 0 chr1 117389213 117389337 -79806095 + B1_Mus1 SINE Alu 2 125 -23 6 1480 243 0 0 0 chr1 117389338 117389365 -79806067 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1480 7584 230 283 50 chr1 117389365 117389770 -79805662 + L1_Mur2 LINE L1 1642 2049 -3837 6 1480 279 0 0 0 chr1 117389770 117389801 -79805631 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1480 7584 230 283 50 chr1 117389801 117389964 -79805468 + L1_Mur2 LINE L1 2050 2235 -3651 6 1480 302 45 23 0 chr1 117389964 117390008 -79805424 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1480 9402 198 96 19 chr1 117390008 117392634 -79802798 + L1_Mur2 LINE L1 2236 5885 -1 6 1480 309 356 110 0 chr1 117392647 117392765 -79802667 + ID_B1 SINE B4 90 220 -4 6 1480 1048 306 16 34 chr1 117395079 117395461 -79799971 + MTEa LTR MaLR 3 377 -2 6 1480 1089 58 0 0 chr1 117395700 117395837 -79799595 - L1_Mus1 LINE L1 -35 6532 6396 6 1480 5279 116 27 14 chr1 117395863 117396868 -79798564 + L1_Mus4 LINE L1 5801 6636 0 6 1480 411 162 0 0 chr1 117396870 117396950 -79798482 + GA-rich Low_complexity Low_complexity 3 82 0 6 1480 226 250 83 0 chr1 117397993 117398065 -79797367 - L1MB4 LINE L1 -68 6112 6035 6 1480 4275 161 43 7 chr1 117398463 117399234 -79796198 + Lx2B LINE L1 6197 6995 -5 6 1480 347 365 26 5 chr1 117399358 117399548 -79795884 - B3A SINE B2 -4 194 1 6 1480 466 252 101 22 chr1 117399693 117399831 -79795601 + B1_Mur4 SINE Alu 2 150 0 6 1480 31 26 0 0 chr1 117400090 117400128 -79795304 + AT_rich Low_complexity Low_complexity 1 38 0 6 1480 662 382 18 0 chr1 117400806 117401078 -79794354 - B4A SINE B4 -13 279 3 6 1480 335 329 81 37 chr1 117401400 117401561 -79793871 + B3A SINE B2 27 194 -4 6 1480 651 318 20 40 chr1 117401654 117401906 -79793526 - B4A SINE B4 0 292 46 6 1480 377 264 98 98 chr1 117402044 117402350 -79793082 + RMER12 LTR ERVK 704 1009 -313 6 1480 14661 146 15 28 chr1 117403018 117407011 -79788421 + L1VL2 LINE L1 365 4180 -1706 6 1480 3817 54 6 2 chr1 117407012 117407514 -79787918 + MT-int LTR MaLR 295 798 -300 6 1480 398 355 99 15 chr1 117408006 117408269 -79787163 + B4A SINE B4 2 286 -6 6 1480 342 0 0 0 chr1 117408282 117408320 -79787112 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1480 321 304 0 0 chr1 117408345 117408424 -79787008 + RSINE1 SINE B4 3 81 -84 6 1480 21 0 0 0 chr1 117408491 117408512 -79786920 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 304 319 35 9 chr1 117408785 117408899 -79786533 - MTD-int LTR MaLR -455 803 687 6 1480 1808 280 59 30 chr1 117409568 117410178 -79785254 - MTD-int LTR MaLR -630 628 1 6 1480 1171 309 52 17 chr1 117410178 117410433 -79784999 - MTD LTR MaLR 0 419 150 6 1480 2940 87 12 0 chr1 117410433 117410845 -79784587 + BGLII LTR ERVK 3 419 -2 6 1480 1171 309 52 17 chr1 117410845 117410994 -79784438 - MTD LTR MaLR -270 149 1 6 1480 1096 58 0 0 chr1 117411171 117411308 -79784124 + B1_Mus1 SINE Alu 2 138 -10 6 1480 655 22 0 22 chr1 117411308 117411399 -79784033 + (CAAAA)n Simple_repeat Simple_repeat 2 90 0 6 1480 1145 256 136 19 chr1 117411627 117411994 -79783438 - MTD LTR MaLR -8 411 2 6 1480 21 0 0 0 chr1 117412062 117412083 -79783349 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 290 310 83 104 chr1 117412102 117412246 -79783186 + RSINE1 SINE B4 1 141 -24 6 1480 333 0 0 0 chr1 117412276 117412313 -79783119 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1480 318 299 54 48 chr1 117412333 117412519 -79782913 + L1M4 LINE L1 2434 2620 -3526 6 1480 903 127 0 0 chr1 117412671 117412805 -79782627 + B1_Mus2 SINE Alu 14 147 0 6 1480 321 255 0 29 chr1 117412805 117412910 -79782522 + GA-rich Low_complexity Low_complexity 2 103 0 6 1480 317 388 0 8 chr1 117413861 117413978 -79781454 + MT2A LTR ERVL 300 415 -118 6 1480 216 278 0 18 chr1 117414244 117414299 -79781133 - B4A SINE B4 -238 54 1 6 1480 358 317 99 6 chr1 117414481 117414662 -79780770 + B3A SINE B2 1 198 0 6 1480 3753 95 51 0 chr1 117415051 117415638 -79779794 - MusHAL1 LINE L1 -1944 768 152 6 1480 4194 104 19 8 chr1 117415628 117416255 -79779177 - L1VL4 LINE L1 -5364 938 305 6 1480 488 137 0 0 chr1 117416255 117416328 -79779104 - RMER13A LTR ERVK -787 73 1 6 1480 266 67 22 0 chr1 117417268 117417313 -79778119 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 6 1480 3344 42 0 10 chr1 117417326 117417739 -79777693 - L1Md_A LINE L1 0 6582 6174 6 1480 302 333 72 46 chr1 117418060 117418255 -79777177 + MER74A LTR ERVL 157 356 -202 6 1480 306 385 93 42 chr1 117418409 117418623 -79776809 + B4 SINE B4 56 280 -12 6 1480 357 283 22 0 chr1 117418673 117418765 -79776667 - ORR1E LTR MaLR 0 370 277 6 1480 441 0 0 0 chr1 117418788 117418837 -79776595 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1480 773 298 60 45 chr1 117418837 117419104 -79776328 - ORR1E LTR MaLR -86 273 3 6 1480 206 254 15 31 chr1 117419107 117419172 -79776260 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 6 1480 330 250 0 0 chr1 117419173 117419293 -79776139 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 1480 272 317 16 13 chr1 117420091 117420194 -79775238 - PB1D10 SINE Alu -5 115 9 6 1480 768 302 173 12 chr1 117420464 117420793 -79774639 + Lx8 LINE L1 6929 7310 -163 6 1480 261 351 13 0 chr1 117420976 117421053 -79774379 + B3A SINE B2 101 178 -20 6 1480 220 255 0 0 chr1 117421547 117421598 -79773834 - MIRc SINE MIR -141 127 77 6 1480 630 23 28 57 chr1 117422096 117422237 -79773195 + (TTTTTG)n Simple_repeat Simple_repeat 1 137 0 6 1480 543 66 0 0 chr1 117422304 117422380 -79773052 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1480 22 35 0 0 chr1 117422473 117422502 -79772930 + AT_rich Low_complexity Low_complexity 1 29 0 6 1480 609 168 50 89 chr1 117422513 117422707 -79772725 - MTC-int LTR MaLR -174 1084 779 6 1480 429 337 65 33 chr1 117422687 117422902 -79772530 - B4 SINE B4 -35 257 36 6 1480 415 345 123 19 chr1 117423725 117423985 -79771447 + B4 SINE B4 2 288 -4 6 1480 351 0 0 0 chr1 117423996 117424035 -79771397 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1480 351 0 0 0 chr1 117424035 117424073 -79771359 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1480 642 344 24 17 chr1 117424384 117424671 -79770761 - B4 SINE B4 -2 290 2 6 1480 444 37 0 0 chr1 117424847 117424901 -79770531 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1480 548 361 11 37 chr1 117425188 117425259 -79770173 + B4 SINE B4 13 79 -213 6 1480 755 11 11 0 chr1 117425259 117425351 -79770081 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 6 1480 548 361 11 37 chr1 117425351 117425469 -79769963 + B4 SINE B4 80 197 -95 6 1480 7372 36 12 5 chr1 117425666 117426562 -79768870 + L1Md_F2 LINE L1 5679 6581 -1 6 1480 296 283 30 91 chr1 117427667 117427799 -79767633 + RMER15 LTR ERVL 3 126 -449 6 1480 699 350 21 11 chr1 117427822 117428105 -79767327 + RMER15 LTR ERVL 276 561 -14 6 1480 215 301 107 12 chr1 117429349 117429433 -79765999 - B4 SINE B4 -199 93 2 6 1480 270 276 11 0 chr1 117429623 117429710 -79765722 + GA-rich Low_complexity Low_complexity 1 88 0 6 1480 252 0 0 0 chr1 117431331 117431359 -79764073 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1480 870 62 0 0 chr1 117431359 117431471 -79763961 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 1480 225 167 0 0 chr1 117431936 117431978 -79763454 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1480 236 311 152 71 chr1 117432063 117432260 -79763172 - B4A SINE B4 -75 217 5 6 1480 25 51 0 0 chr1 117432260 117432299 -79763133 + AT_rich Low_complexity Low_complexity 1 39 0 6 1480 2804 222 90 34 chr1 117432680 117433158 -79762274 + RLTR40 LTR ERVK 8 520 -297 6 1480 444 19 0 0 chr1 117433158 117433211 -79762221 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1480 2804 222 90 34 chr1 117433211 117433489 -79761943 + RLTR40 LTR ERVK 521 805 -12 6 1480 751 311 74 16 chr1 117433522 117433833 -79761599 - RMER5 LTR ERV1 -132 402 74 6 1480 265 302 75 0 chr1 117433858 117433964 -79761468 - B3 SINE B2 0 216 103 6 1480 310 305 0 0 chr1 117433949 117434031 -79761401 - ORR1E LTR MaLR -125 234 153 6 1480 1230 286 106 9 chr1 117434302 117434753 -79760679 - Lx6 LINE L1 0 7460 6966 6 1480 1333 139 109 189 chr1 117434750 117435085 -79760347 - Lx2B LINE L1 -8 6992 6657 6 1480 872 101 65 7 chr1 117435085 117435224 -79760208 - B1_Mus1 SINE Alu 0 148 2 6 1480 1333 139 109 189 chr1 117435224 117435339 -79760093 - Lx2B LINE L1 -344 6656 6578 6 1480 1167 194 100 4 chr1 117435334 117435613 -79759819 - L1_Mur3 LINE L1 -1061 4819 4514 6 1480 7058 66 2 8 chr1 117435673 117436605 -79758827 - L1Md_F2 LINE L1 0 6582 5679 6 1480 2754 160 31 14 chr1 117436714 117437648 -79757784 - L1Md_F2 LINE L1 -1357 4523 3833 6 1480 5939 216 29 53 chr1 117437638 117438339 -79757093 - L1Md_F2 LINE L1 -3008 2872 2224 6 1480 309 51 0 0 chr1 117438339 117438378 -79757054 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1480 987 118 0 0 chr1 117438378 117438514 -79756918 - B1_Mus1 SINE Alu -10 138 3 6 1480 5939 216 29 53 chr1 117438514 117438662 -79756770 - L1Md_F2 LINE L1 -3657 2223 2075 6 1480 270 56 0 0 chr1 117438662 117438698 -79756734 + (TGG)n Simple_repeat Simple_repeat 3 38 0 6 1480 5939 216 29 53 chr1 117438698 117439086 -79756346 - L1Md_F2 LINE L1 -3806 2074 1688 6 1480 243 0 0 0 chr1 117439086 117439113 -79756319 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 1480 5939 219 30 51 chr1 117439113 117439607 -79755825 - L1Md_F2 LINE L1 -4193 1687 1174 6 1480 1040 248 48 25 chr1 117439617 117440014 -79755418 - L1Md_F2 LINE L1 -6464 1264 859 6 1480 248 340 118 9 chr1 117440064 117440174 -79755258 + RSINE1 SINE B4 43 164 -1 6 1480 384 82 0 0 chr1 117440184 117440245 -79755187 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 2 608 311 183 42 chr1 117440263 117440569 -79754863 - ORR1D2 LTR MaLR -17 353 5 6 1481 414 0 0 0 chr1 117441022 117441068 -79754364 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1481 728 335 23 28 chr1 117441068 117441333 -79754099 - B4 SINE B4 -15 277 1 7 1481 306 73 0 0 chr1 117441680 117441721 -79753711 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 7 1481 567 43 0 0 chr1 117441725 117441795 -79753637 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 7 1481 396 0 0 0 chr1 117442020 117442064 -79753368 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1481 365 143 29 0 chr1 117442071 117442141 -79753291 + G-rich Low_complexity Low_complexity 1 72 0 7 1481 225 310 67 50 chr1 117442556 117442675 -79752757 + RLTR40 LTR ERVK 63 183 -634 7 1481 579 351 15 75 chr1 117442793 117443061 -79752371 - B4 SINE B4 -32 260 9 7 1481 423 0 0 0 chr1 117443866 117443913 -79751519 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1481 2383 177 124 17 chr1 117443997 117444267 -79751165 - RMER4B LTR ERVK -13 572 261 7 1481 238 0 26 51 chr1 117444267 117444306 -79751126 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1481 2383 177 124 17 chr1 117444306 117444552 -79750880 - RMER4B LTR ERVK -325 260 1 7 1481 746 300 122 0 chr1 117444677 117444924 -79750508 - B4 SINE B4 -13 279 3 7 1481 365 379 27 67 chr1 117445085 117445385 -79750047 + B4A SINE B4 5 292 0 7 1481 3191 210 34 14 chr1 117445539 117446192 -79749240 - Lx4B LINE L1 -21 7037 6372 7 1481 189 0 0 0 chr1 117446204 117446225 -79749207 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 7 1481 1038 50 7 14 chr1 117446226 117446369 -79749063 - L1Md_F3 LINE L1 -17 6567 6426 7 1481 4643 30 0 0 chr1 117446369 117446909 -79748523 + L1Md_F3 LINE L1 5903 6442 -142 7 1481 3555 186 63 13 chr1 117446901 117447747 -79747685 - Lx4B LINE L1 -674 6384 5482 7 1481 277 242 109 11 chr1 117447735 117447827 -79747605 + Lx4B LINE L1 6950 7050 -8 7 1481 881 274 77 36 chr1 117447863 117448691 -79746741 + L1_Mur1 LINE L1 375 1124 -5962 7 1481 8910 172 52 2 chr1 117449157 117449394 -79746038 + L1_Mur1 LINE L1 1130 1378 -4508 7 1481 6507 41 0 1 chr1 117449394 117450175 -79745257 + L1Md_T LINE L1 5803 6582 0 7 1481 8910 201 60 14 chr1 117450175 117452210 -79743222 + L1_Mur1 LINE L1 1379 3513 -2373 7 1481 324 0 0 0 chr1 117452904 117452940 -79742492 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 7 1481 578 344 5 46 chr1 117453221 117453394 -79742038 + B4A SINE B4 106 271 -21 7 1481 315 0 0 0 chr1 117453394 117453429 -79742003 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1481 578 344 5 46 chr1 117453429 117453450 -79741982 + B4A SINE B4 272 292 0 7 1481 514 344 18 36 chr1 117453630 117453796 -79741636 + RSINE1 SINE B4 3 165 0 7 1481 598 258 111 37 chr1 117454507 117454785 -79740647 + Lx6 LINE L1 7208 7679 -17 7 1481 387 306 18 18 chr1 117454920 117455033 -79740399 - PB1D10 SINE Alu -3 114 2 7 1481 505 250 57 16 chr1 117455190 117455312 -79740120 + ETnERV2-int LTR ERVK 7070 7196 -210 7 1481 510 326 7 7 chr1 117455931 117456070 -79739362 + RSINE1 SINE B4 2 140 -25 7 1481 390 21 0 0 chr1 117456076 117456123 -79739309 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1481 396 0 0 0 chr1 117456123 117456166 -79739266 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1481 16311 188 85 22 chr1 117456926 117462798 -79732634 + Lx LINE L1 384 6647 -7 7 1481 7822 73 9 3 chr1 117463783 117465352 -79730080 - L1_Mus1 LINE L1 -1 6566 4984 7 1481 393 366 8 15 chr1 117465426 117465559 -79729873 - RSINE1 SINE B4 -31 134 3 7 1481 1135 247 101 2 chr1 117466390 117466736 -79728696 + ORR1D1 LTR MaLR 8 371 -3 7 1481 492 273 53 8 chr1 117466855 117466988 -79728444 + B3 SINE B2 1 139 -77 7 1481 2733 86 3 0 chr1 117467006 117467378 -79728054 - L1_Mus1 LINE L1 0 6567 6195 7 1481 417 70 0 0 chr1 117468051 117468108 -79727324 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1481 1113 293 22 34 chr1 117468292 117468721 -79726711 - RLTR16 LTR ERVK -22 483 1 7 1481 230 396 43 25 chr1 117468899 117469062 -79726370 - ORR1E LTR MaLR -168 191 26 7 1481 904 291 73 33 chr1 117469200 117469530 -79725902 - MTE2b LTR MaLR 0 379 37 7 1481 698 308 90 54 chr1 117469599 117470045 -79725387 + MT2A LTR ERVL 72 533 0 7 1481 448 316 19 80 chr1 117470381 117470594 -79724838 + ID_B1 SINE B4 25 224 0 7 1481 294 29 0 0 chr1 117470813 117470848 -79724584 + (CAT)n Simple_repeat Simple_repeat 3 37 0 7 1481 761 114 0 8 chr1 117470846 117470970 -79724462 + (TTC)n Simple_repeat Simple_repeat 3 125 0 7 1481 648 48 0 0 chr1 117470961 117471045 -79724387 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 1481 259 221 43 29 chr1 117471128 117471198 -79724234 - RLTR21 LTR ERVK -161 1411 1341 7 1481 890 218 97 97 chr1 117471230 117471464 -79723968 - RLTR22_Mus LTR ERVK -249 1559 1358 7 1481 724 48 0 19 chr1 117471464 117471571 -79723861 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1481 890 260 188 29 chr1 117471571 117471740 -79723692 - RLTR22_Mus LTR ERVK -451 1357 1123 7 1481 971 287 70 116 chr1 117471756 117472158 -79723274 - RLTR22_Mur LTR ERVK -1049 799 454 7 1481 3624 45 0 7 chr1 117472158 117472604 -79722828 - L1Md_T LINE L1 0 6582 6140 7 1481 971 287 70 116 chr1 117472604 117472871 -79722561 - RLTR22_Mur LTR ERVK -1395 453 161 7 1481 7558 57 4 15 chr1 117472871 117474004 -79721428 - L1Md_F2 LINE L1 -13 6569 5454 7 1481 678 253 6 12 chr1 117474004 117474168 -79721264 - RMER12 LTR ERVK -1159 163 1 7 1481 945 263 99 62 chr1 117474867 117475219 -79720213 + MTE2b LTR MaLR 1 368 -6 7 1481 369 323 26 21 chr1 117475462 117475655 -79719777 + B3A SINE B2 4 197 -1 7 1481 466 293 86 58 chr1 117476048 117476222 -79719210 - B3A SINE B2 -18 180 2 7 1481 394 376 35 72 chr1 117476704 117477022 -79718410 - MLT2B1 LTR ERVL -174 346 41 7 1481 283 260 182 0 chr1 117477097 117477174 -79718258 + B4 SINE B4 194 284 -8 7 1481 2360 52 78 15 chr1 117477812 117478144 -79717288 - L1Md_F2 LINE L1 -12 6570 6218 7 1481 423 299 79 89 chr1 117478195 117478397 -79717035 + B3A SINE B2 17 216 0 7 1481 414 258 67 22 chr1 117478733 117478868 -79716564 + RLTR22_Mur LTR ERVK 327 467 -1381 7 1481 1134 82 0 0 chr1 117478868 117479014 -79716418 + B1_Mus2 SINE Alu 1 146 -1 7 1481 194 0 39 0 chr1 117479018 117479044 -79716388 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1481 2107 51 37 0 chr1 117479076 117479349 -79716083 + L1Md_F3 LINE L1 6302 6584 0 7 1481 203 214 14 0 chr1 117480100 117480170 -79715262 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1481 1341 208 84 7 chr1 117480312 117480622 -79714810 + RLTR22_Mur LTR ERVK 476 809 -1039 7 1481 599 230 21 14 chr1 117480688 117480829 -79714603 + RLTR22_Mur LTR ERVK 1590 1731 -117 7 1481 527 246 105 12 chr1 117481863 117482110 -79713322 - L1M2 LINE L1 -1544 4599 4330 7 1481 1300 281 29 77 chr1 117482329 117482447 -79712985 + RMER5 LTR ERV1 23 110 -424 7 1481 1945 128 7 3 chr1 117482447 117482744 -79712688 - L1_Mus3 LINE L1 -8 6630 6333 7 1481 1300 281 29 77 chr1 117482744 117483148 -79712284 + RMER5 LTR ERV1 111 520 -14 7 1481 1734 230 43 78 chr1 117483151 117483614 -79711818 + RLTR25B LTR ERVK 2 448 -580 7 1481 2288 97 0 0 chr1 117484129 117484448 -79710984 - L1_Mm LINE L1 -1075 4808 4490 7 1481 601 66 0 54 chr1 117484448 117484560 -79710872 + L1Md_F2 LINE L1 6477 6582 0 7 1481 359 236 42 132 chr1 117484560 117484843 -79710589 + RLTR25B LTR ERVK 691 1015 -13 7 1481 1267 113 10 15 chr1 117485240 117485446 -79709986 - L1_Mus3 LINE L1 -4 6634 6430 7 1481 1322 244 87 17 chr1 117485493 117485966 -79709466 + RMER20A LTR ERVK 11 516 0 7 1481 540 383 99 9 chr1 117485966 117486194 -79709238 + B4A SINE B4 44 292 0 7 1481 210 128 0 0 chr1 117487262 117487301 -79708131 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1481 558 317 55 14 chr1 117487876 117488081 -79707351 - B3A SINE B2 -2 214 9 7 1481 23 33 0 0 chr1 117488453 117488483 -79706949 + AT_rich Low_complexity Low_complexity 1 30 0 7 1481 329 323 29 57 chr1 117488492 117488597 -79706835 + B4A SINE B4 9 110 -182 7 1481 627 271 0 18 chr1 117488716 117488885 -79706547 - Lx6 LINE L1 -115 7345 7180 7 1481 623 281 0 18 chr1 117488888 117489051 -79706381 + B4 SINE B4 127 286 -6 7 1481 459 0 0 0 chr1 117489062 117489113 -79706319 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1481 31025 29 77 28 chr1 117489174 117493409 -79702023 + L1Md_A LINE L1 643 5169 -714 7 1481 228 283 31 61 chr1 117493409 117493507 -79701925 - RMER20A LTR ERVK -236 280 186 7 1481 31025 29 77 28 chr1 117493507 117493896 -79701536 + L1Md_A LINE L1 5170 5586 -297 7 1481 8307 35 6 0 chr1 117493896 117494886 -79700546 + L1Md_T LINE L1 5587 6582 0 7 1481 306 0 0 0 chr1 117495127 117495161 -79700271 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1481 576 291 19 37 chr1 117495250 117495464 -79699968 + B3A SINE B2 5 214 -2 7 1481 563 344 42 42 chr1 117496604 117496865 -79698567 + B4A SINE B4 2 262 -30 7 1481 327 297 55 67 chr1 117497054 117497292 -79698140 + L1MB7 LINE L1 5776 6010 -174 7 1481 335 313 61 0 chr1 117497397 117497512 -79697920 - RSINE1 SINE B4 -19 146 25 7 1481 249 265 24 12 chr1 117497628 117497712 -79697720 + L1MC4 LINE L1 7688 7772 -270 7 1481 3436 246 55 33 chr1 117497820 117498838 -79696594 - Lx5 LINE L1 0 7050 6011 7 1481 217 323 0 0 chr1 117498952 117499014 -79696418 + GA-rich Low_complexity Low_complexity 2 63 0 7 1481 218 359 73 28 chr1 117499859 117499968 -79695464 - B4 SINE B4 -171 121 8 7 1481 210 245 9 86 chr1 117500423 117500539 -79694893 + A-rich Low_complexity Low_complexity 4 110 0 1 1481 331 274 18 0 chr1 117501167 117501280 -79694152 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 1481 431 179 9 0 chr1 117501280 117501386 -79694046 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1481 253 274 128 34 chr1 117501395 117501512 -79693920 - RMER12 LTR ERVK -476 846 719 4 1481 659 304 64 48 chr1 117501651 117501900 -79693532 + B4A SINE B4 39 291 -1 5 1481 16522 114 22 5 chr1 117502010 117503381 -79692051 + L1VL4 LINE L1 201 1599 -1960 6 1481 558 95 0 0 chr1 117503381 117503476 -79691956 + (CATA)n Simple_repeat Simple_repeat 2 96 0 7 1481 16522 103 19 10 chr1 117503476 117505345 -79690087 + L1VL4 LINE L1 1600 3484 -75 6 1481 35002 47 0 5 chr1 117505347 117510497 -79684935 + L1Md_T LINE L1 367 5589 -297 8 1481 8353 36 0 0 chr1 117510497 117511491 -79683941 + L1Md_T LINE L1 5590 6583 -2 8 1481 457 47 0 75 chr1 117511493 117511586 -79683846 + L1VL4 LINE L1 3474 3559 0 6 1481 21 0 0 0 chr1 117511586 117511607 -79683825 + AT_rich Low_complexity Low_complexity 1 21 0 9 1481 294 236 133 11 chr1 117511626 117511716 -79683716 - B3 SINE B2 -4 212 112 1 1481 213 196 0 0 chr1 117511775 117511821 -79683611 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1 1481 475 293 135 25 chr1 117511844 117512236 -79683196 + L1MD LINE L1 3694 4128 -2018 1 1481 643 350 71 24 chr1 117512273 117512551 -79682881 + ORR1E LTR MaLR 1 292 -67 1 1481 771 69 0 0 chr1 117512551 117512653 -79682779 + (CAGAG)n Simple_repeat Simple_repeat 1 102 0 1 1481 609 58 0 0 chr1 117512656 117512742 -79682690 + (CAAAA)n Simple_repeat Simple_repeat 1 86 0 1 1481 643 350 71 24 chr1 117512742 117512796 -79682636 + ORR1E LTR MaLR 293 350 -9 1 1481 606 14 0 0 chr1 117513040 117513111 -79682321 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1 1481 483 371 18 0 chr1 117513118 117513288 -79682144 - B4 SINE B4 -112 180 8 1 1481 4898 261 59 20 chr1 117513413 117514812 -79680620 + Lx6 LINE L1 6008 7460 0 1 1481 315 0 0 0 chr1 117515032 117515067 -79680365 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1481 385 326 22 26 chr1 117515155 117515362 -79680070 + L1M4 LINE L1 5311 5513 -665 2 1481 217 0 29 29 chr1 117515641 117515675 -79679757 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2 1481 1070 58 0 0 chr1 117515675 117515812 -79679620 - B1_Mm SINE Alu -10 137 1 2 1481 733 315 75 53 chr1 117515868 117515894 -79679538 - B4 SINE B4 0 292 277 2 1481 393 58 0 0 chr1 117515894 117515946 -79679486 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1481 564 15 0 0 chr1 117515946 117516010 -79679422 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 1481 733 315 75 53 chr1 117516010 117516264 -79679168 - B4 SINE B4 -16 276 6 2 1481 32948 80 11 3 chr1 117516684 117520474 -79674958 - L1Md_F2 LINE L1 -14 6568 2738 2 1481 6012 60 3 0 chr1 117520474 117521237 -79674195 - L1Md_F2 LINE L1 -3 6579 5815 2 1481 32948 111 11 13 chr1 117521237 117523430 -79672002 - L1Md_F2 LINE L1 -3146 2737 563 2 1481 248 322 0 11 chr1 117523776 117523870 -79671562 + CT-rich Low_complexity Low_complexity 2 94 0 2 1481 5474 112 37 1 chr1 117523906 117524736 -79670696 - L1_Mus1 LINE L1 -3 6564 5705 2 1481 4961 100 14 0 chr1 117524736 117524954 -79670478 + L1_Mm LINE L1 5016 5234 -649 3 1481 261 0 0 0 chr1 117524954 117524983 -79670449 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 1481 4961 100 14 0 chr1 117524983 117525474 -79669958 + L1_Mm LINE L1 5235 5733 -150 3 1481 219 69 0 0 chr1 117525479 117525508 -79669924 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1481 28670 68 3 18 chr1 117525668 117529620 -79665812 + L1Md_F3 LINE L1 1692 5585 -298 3 1481 7808 57 3 1 chr1 117529621 117530614 -79664818 + L1Md_F3 LINE L1 5587 6581 -3 3 1481 281 318 37 60 chr1 117530615 117530749 -79664683 + RMER15 LTR ERVL 293 423 -152 3 1481 3633 92 6 2 chr1 117530769 117531284 -79664148 + L1_Mus1 LINE L1 6050 6566 -1 3 1481 1576 231 30 0 chr1 117532117 117532480 -79662952 - ORR1C1 LTR MaLR -2 376 3 3 1481 270 366 65 8 chr1 117532587 117532711 -79662721 + RMER15 LTR ERVL 299 429 -146 3 1481 765 82 0 0 chr1 117532726 117532836 -79662596 + (TTTC)n Simple_repeat Simple_repeat 1 110 0 3 1481 21 95 0 0 chr1 117532854 117532917 -79662515 + AT_rich Low_complexity Low_complexity 1 63 0 3 1481 507 288 6 23 chr1 117533235 117533409 -79662023 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 1481 464 294 0 0 chr1 117533432 117533657 -79661775 + (CA)n Simple_repeat Simple_repeat 1 225 0 4 1481 210 128 0 0 chr1 117533686 117533725 -79661707 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1481 337 295 9 18 chr1 117534243 117534357 -79661075 + CT-rich Low_complexity Low_complexity 3 115 0 4 1481 30 0 0 0 chr1 117534525 117534555 -79660877 + AT_rich Low_complexity Low_complexity 1 30 0 4 1481 395 329 48 78 chr1 117535589 117535820 -79659612 + B4 SINE B4 1 224 -68 4 1481 590 177 8 0 chr1 117535926 117536050 -79659382 + (TAG)n Simple_repeat Simple_repeat 2 126 0 4 1481 528 16 0 0 chr1 117536320 117536381 -79659051 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1481 270 234 0 0 chr1 117537732 117537796 -79657636 + CT-rich Low_complexity Low_complexity 2 65 0 4 1481 22 70 0 0 chr1 117537825 117537868 -79657564 + AT_rich Low_complexity Low_complexity 1 43 0 4 1481 532 77 0 0 chr1 117537898 117537963 -79657469 + L1Md_F3 LINE L1 5522 5586 -297 4 1481 8360 31 2 1 chr1 117537964 117538960 -79656472 + L1Md_F3 LINE L1 5588 6584 0 4 1481 378 192 46 46 chr1 117538963 117539072 -79656360 - RLTR14 LTR ERV1 -49 333 225 5 1481 429 305 17 27 chr1 117540248 117540460 -79654972 + CT-rich Low_complexity Low_complexity 1 209 0 5 1481 180 221 26 13 chr1 117540480 117540558 -79654874 + CT-rich Low_complexity Low_complexity 5 83 0 5 1481 1093 80 0 0 chr1 117540613 117540750 -79654682 - B1_Mus2 SINE Alu -7 140 4 5 1481 380 305 6 31 chr1 117540770 117540929 -79654503 + CT-rich Low_complexity Low_complexity 6 160 0 5 1481 234 0 0 0 chr1 117541197 117541223 -79654209 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1481 350 269 102 12 chr1 117541241 117541423 -79654009 - L1MEf LINE L1 -4132 2110 1959 5 1481 270 253 22 98 chr1 117541785 117541877 -79653555 + RSINE1 SINE B4 81 165 0 5 1481 410 318 46 82 chr1 117542377 117542596 -79652836 + B3 SINE B2 1 211 -5 5 1481 1195 54 0 0 chr1 117542714 117542861 -79652571 + B1_Mus2 SINE Alu 1 147 0 5 1481 189 304 204 16 chr1 117542878 117543039 -79652393 + MIR SINE MIR 41 234 -34 5 1481 429 337 11 44 chr1 117543163 117543343 -79652089 + B3A SINE B2 9 182 -16 6 1481 450 0 0 0 chr1 117543348 117543398 -79652034 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 6 1481 2633 81 6 0 chr1 117544687 117545031 -79650401 - ORR1A1 LTR MaLR 0 346 1 6 1481 319 237 174 51 chr1 117545697 117545893 -79649539 + L1MEf LINE L1 829 1048 -5152 6 1481 314 293 187 0 chr1 117546253 117546376 -79649056 + Lx9 LINE L1 6806 6890 -754 6 1481 1797 284 56 44 chr1 117546383 117547327 -79648105 + Lx5 LINE L1 4941 5872 -1178 6 1481 348 316 1 0 chr1 117547312 117547443 -79647989 + Lx5 LINE L1 6577 6698 -998 6 1481 569 344 72 23 chr1 117547654 117547916 -79647516 + B4A SINE B4 6 280 -12 6 1481 198 0 0 0 chr1 117547954 117547976 -79647456 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1481 585 42 0 0 chr1 117547976 117548047 -79647385 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1481 403 292 170 0 chr1 117548653 117548800 -79646632 + B3A SINE B2 5 176 -22 6 1481 426 360 80 69 chr1 117549446 117549634 -79645798 + B4 SINE B4 3 192 -100 7 1481 210 118 0 0 chr1 117549636 117549670 -79645762 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1481 1098 0 0 0 chr1 117549820 117549942 -79645490 + (TCTCCC)n Simple_repeat Simple_repeat 3 124 0 7 1481 474 49 0 0 chr1 117550368 117550429 -79645003 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1481 349 274 0 0 chr1 117550436 117550509 -79644923 + RLTR18 LTR ERVK 488 560 -56 7 1481 222 91 0 0 chr1 117550512 117550545 -79644887 + (TTA)n Simple_repeat Simple_repeat 2 34 0 7 1481 352 108 0 2 chr1 117550547 117550607 -79644825 - B1_Mur4 SINE Alu 0 150 91 7 1481 283 82 0 20 chr1 117550609 117550659 -79644773 - Lx4A LINE L1 -3 7055 7007 7 1481 1095 288 77 45 chr1 117550708 117551218 -79644214 - Lx8 LINE L1 -4 7469 6935 7 1481 505 340 71 30 chr1 117552270 117552467 -79642965 + B4A SINE B4 84 288 -4 7 1481 600 274 54 30 chr1 117553249 117553452 -79641980 + ID_B1 SINE B4 2 209 -15 8 1481 297 0 0 0 chr1 117553693 117553726 -79641706 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 8 1481 1082 77 0 0 chr1 117553726 117553869 -79641563 - B1_Mm SINE Alu -3 144 2 8 1481 838 296 17 43 chr1 117554406 117554706 -79640726 - B4A SINE B4 0 292 1 8 1481 234 378 56 7 chr1 117554855 117554999 -79640433 - MIR SINE MIR -66 196 46 8 1481 1219 224 42 11 chr1 117555800 117556062 -79639370 - ORR1B2 LTR MaLR -97 270 1 8 1481 264 100 0 0 chr1 117556117 117556157 -79639275 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1481 1711 220 27 6 chr1 117556615 117556981 -79638451 + ORR1D1 LTR MaLR 1 374 0 8 1481 1908 111 60 26 chr1 117557308 117557660 -79637772 - Lx LINE L1 -1 6653 6290 8 1481 737 218 20 26 chr1 117557871 117558022 -79637410 - B1_Mur4 SINE Alu 0 150 1 8 1481 402 100 0 0 chr1 117558112 117558172 -79637260 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1481 22 35 0 0 chr1 117558226 117558255 -79637177 + AT_rich Low_complexity Low_complexity 1 29 0 9 1481 222 138 17 33 chr1 117558284 117558344 -79637088 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1481 615 320 11 17 chr1 117558379 117558557 -79636875 - B3A SINE B2 -18 180 4 9 1481 496 339 50 59 chr1 117558557 117558777 -79636655 - B4A SINE B4 -69 223 6 9 1481 26 30 0 0 chr1 117559516 117559549 -79635883 + AT_rich Low_complexity Low_complexity 1 33 0 9 1481 285 167 0 0 chr1 117559549 117559603 -79635829 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1481 617 355 61 8 chr1 117559659 117559906 -79635526 - B4A SINE B4 0 292 33 9 1481 344 320 31 0 chr1 117560444 117560541 -79634891 + RSINE1 SINE B4 15 114 -51 9 1481 1037 92 7 0 chr1 117560607 117560749 -79634683 - B1_Mus1 SINE Alu -5 143 1 9 1481 23 54 0 0 chr1 117560894 117560931 -79634501 + AT_rich Low_complexity Low_complexity 1 37 0 1 1481 884 78 16 0 chr1 117561410 117561539 -79633893 + (GAAA)n Simple_repeat Simple_repeat 1 131 0 1 1481 810 120 0 0 chr1 117561540 117561665 -79633767 + (GGGAA)n Simple_repeat Simple_repeat 5 129 0 1 1481 297 167 0 0 chr1 117561666 117561720 -79633712 + A-rich Low_complexity Low_complexity 1 54 0 1 1481 1107 299 70 3 chr1 117561950 117562305 -79633127 - MTEa LTR MaLR 0 379 1 1 1481 2886 145 71 2 chr1 117563636 117564142 -79631290 - Lx2 LINE L1 0 6997 6457 1 1481 1074 177 10 1 chr1 117564155 117564369 -79631063 - Lx2 LINE L1 -1042 5955 5735 1 1481 181 50 0 111 chr1 117567227 117567272 -79628160 + T-rich Low_complexity Low_complexity 5 44 0 1 1481 441 0 0 0 chr1 117567454 117567503 -79627929 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1481 482 308 0 0 chr1 117567512 117567642 -79627790 - B3 SINE B2 -74 142 13 1 1481 1478 216 71 67 chr1 117567845 117568322 -79627110 + RMER6A LTR ERVK 3 481 -275 1 1481 2047 188 32 16 chr1 117568302 117568741 -79626691 + RMER6A LTR ERVK 311 756 0 1 1481 854 342 16 4 chr1 117568783 117569038 -79626394 - B4A SINE B4 -8 284 27 1 1481 2571 86 69 11 chr1 117569394 117569770 -79625662 + MTB LTR MaLR 1 398 -2 1 1481 1065 267 104 15 chr1 117570229 117570563 -79624869 - MTE2b LTR MaLR -4 375 12 1 1481 2725 47 29 88 chr1 117570563 117570819 -79624613 - MTA_Mm LTR MaLR 0 396 176 1 1481 4439 57 2 5 chr1 117570819 117571380 -79624052 - L1Md_F2 LINE L1 -2 6580 6022 1 1481 2725 47 29 88 chr1 117571380 117571544 -79623888 - MTA_Mm LTR MaLR -221 175 1 1 1482 226 50 50 0 chr1 117571699 117571739 -79623693 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1 1482 200 170 21 21 chr1 117571902 117571950 -79623482 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 1 1482 819 326 21 16 chr1 117572112 117572355 -79623077 + B4A SINE B4 5 248 -44 1 1482 242 317 121 45 chr1 117573562 117573694 -79621738 - MER2 DNA MER2_type -202 143 2 1 1482 30 0 0 0 chr1 117573884 117573914 -79621518 + AT_rich Low_complexity Low_complexity 1 30 0 1 1482 372 68 0 106 chr1 117574292 117574358 -79621074 - HAL1-3A_ME LINE L1 -824 2034 1976 1 1482 200 179 51 0 chr1 117574358 117574397 -79621035 + (CATG)n Simple_repeat Simple_repeat 1 41 0 1 1482 620 281 19 68 chr1 117575240 117575446 -79619986 + B3A SINE B2 3 198 0 1 1482 253 239 32 21 chr1 117577062 117577156 -79618276 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 1 1482 496 382 76 8 chr1 117577163 117577414 -79618018 - B4A SINE B4 -4 288 21 1 1482 393 99 37 0 chr1 117578709 117578790 -79616642 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1 1482 518 316 26 68 chr1 117578838 117579028 -79616404 - ID_B1 SINE B4 -37 187 6 1 1482 29 0 0 0 chr1 117579138 117579167 -79616265 + AT_rich Low_complexity Low_complexity 1 29 0 1 1482 626 295 52 0 chr1 117579258 117579431 -79616001 + B3A SINE B2 1 182 -16 1 1482 24 0 0 0 chr1 117579431 117579455 -79615977 + AT_rich Low_complexity Low_complexity 1 24 0 1 1482 366 80 0 0 chr1 117579522 117579572 -79615860 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1482 594 0 0 0 chr1 117580159 117580225 -79615207 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1482 897 37 0 0 chr1 117581025 117581134 -79614298 + (GA)n Simple_repeat Simple_repeat 1 109 0 1 1482 22 56 0 0 chr1 117584508 117584544 -79610888 + AT_rich Low_complexity Low_complexity 1 36 0 1 1482 23 33 0 0 chr1 117584922 117584952 -79610480 + AT_rich Low_complexity Low_complexity 1 30 0 1 1482 240 256 22 11 chr1 117586990 117587081 -79608351 + Lx8 LINE L1 7380 7471 -2 1 1482 736 314 34 31 chr1 117587600 117587892 -79607540 - Lx5 LINE L1 -24 7026 6734 1 1482 2776 239 12 5 chr1 117588074 117588667 -79606765 - Lx5 LINE L1 -335 6715 6119 1 1482 194 309 70 23 chr1 117589101 117589230 -79606202 - L2c LINE L2 -140 3247 3113 1 1482 275 331 94 58 chr1 117589375 117589513 -79605919 - B3 SINE B2 -9 207 65 1 1482 450 326 122 28 chr1 117589586 117589766 -79605666 - B4 SINE B4 -4 288 92 1 1482 258 374 0 36 chr1 117589871 117589982 -79605450 - RSINE1 SINE B4 -48 117 11 1 1482 340 294 12 0 chr1 117589997 117590082 -79605350 - B4 SINE B4 -203 89 4 1 1482 315 44 0 0 chr1 117590717 117590762 -79604670 + L1_Mus2 LINE L1 6522 6566 0 1 1482 289 254 22 36 chr1 117591162 117591301 -79604131 + (CATA)n Simple_repeat Simple_repeat 1 137 0 1 1482 322 280 159 57 chr1 117592195 117592422 -79603010 - Charlie16a DNA MER1_type -1 341 92 1 1482 736 80 18 0 chr1 117592980 117593093 -79602339 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 1482 1065 273 60 33 chr1 117593649 117594016 -79601416 + MTE2b LTR MaLR 1 377 -2 1 1482 267 31 0 0 chr1 117594119 117594151 -79601281 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1482 339 280 34 8 chr1 117595417 117595536 -79599896 - L1MA6 LINE L1 -11 6289 6168 1 1482 431 336 0 8 chr1 117596537 117596663 -79598769 - B4A SINE B4 -16 276 152 1 1482 216 0 0 0 chr1 117597255 117597279 -79598153 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1482 242 250 13 26 chr1 117597302 117597380 -79598052 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 1 1482 273 98 0 0 chr1 117597381 117597422 -79598010 + (TATG)n Simple_repeat Simple_repeat 4 44 0 1 1482 503 353 7 0 chr1 117597476 117597612 -79597820 + RSINE1 SINE B4 27 163 -2 1 1482 206 121 0 0 chr1 117598107 117598140 -79597292 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1482 300 302 113 48 chr1 117599008 117599318 -79596114 - L1MA4 LINE L1 -294 6006 5677 1 1482 580 239 113 29 chr1 117599391 117599630 -79595802 + L1M2 LINE L1 5324 5577 -726 1 1482 369 0 0 0 chr1 117599887 117599928 -79595504 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1482 3217 121 8 4 chr1 117601042 117601524 -79593908 - Lx LINE L1 -19 6635 6152 1 1482 4764 103 20 1 chr1 117601523 117601935 -79593497 - Lx LINE L1 -650 6004 5588 1 1482 1285 149 0 21 chr1 117601935 117602175 -79593257 + Lx LINE L1 6417 6651 -3 1 1482 4764 178 7 70 chr1 117602175 117602913 -79592519 - Lx LINE L1 -296 5587 4912 1 1482 372 357 0 9 chr1 117603211 117603324 -79592108 + B4 SINE B4 118 229 -63 1 1482 1080 110 0 0 chr1 117603335 117603481 -79591951 + B1_Mus2 SINE Alu 1 146 -1 1 1482 237 183 0 0 chr1 117603481 117603541 -79591891 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 1 1482 189 74 0 0 chr1 117603599 117603626 -79591806 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1482 521 306 48 5 chr1 117604033 117604240 -79591192 + B3 SINE B2 1 216 0 1 1482 237 47 0 0 chr1 117604808 117604851 -79590581 - L1_Mus4 LINE L1 0 6636 6594 1 1482 3308 95 4 4 chr1 117604854 117605317 -79590115 - L1_Mus3 LINE L1 -18 6620 6158 1 1482 577 259 138 0 chr1 117605688 117605877 -79589555 + B3 SINE B2 2 216 0 1 1482 1087 276 79 15 chr1 117605897 117606225 -79589207 - MTEb LTR MaLR -30 349 1 1 1482 303 49 0 0 chr1 117606444 117606485 -79588947 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1482 556 347 39 39 chr1 117606486 117606768 -79588664 - B4A SINE B4 -10 282 1 1 1482 219 390 66 6 chr1 117607986 117608126 -79587306 - MIR SINE MIR -86 182 33 1 1482 705 360 91 37 chr1 117608171 117608304 -79587128 + MTE2b LTR MaLR 1 126 -253 1 1482 714 270 67 113 chr1 117608304 117608450 -79586982 + ORR1D1 LTR MaLR 5 148 -226 1 1482 468 0 0 0 chr1 117608450 117608502 -79586930 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1482 441 84 0 0 chr1 117608502 117608572 -79586860 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1482 714 270 67 113 chr1 117608572 117608812 -79586620 + ORR1D1 LTR MaLR 149 373 -1 1 1482 705 360 91 37 chr1 117608812 117609030 -79586402 + MTE2b LTR MaLR 127 371 -8 1 1482 420 37 0 0 chr1 117609252 117609306 -79586126 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1482 15657 52 11 1 chr1 117609725 117612415 -79583017 - L1Md_F2 LINE L1 -13 6569 3851 1 1482 2365 206 85 19 chr1 117612415 117612955 -79582477 + RMER4B LTR ERVK 9 584 -1 1 1482 2211 119 6 3 chr1 117614292 117614630 -79580802 - L1_Mus3 LINE L1 -7 6631 6293 1 1482 480 338 13 7 chr1 117615055 117615210 -79580222 - Lx8 LINE L1 -276 7197 7042 1 1482 3259 47 8 0 chr1 117615269 117615671 -79579761 - L1_Mm LINE L1 0 5883 5479 1 1482 1816 57 8 39 chr1 117615671 117615927 -79579505 + L1Md_F3 LINE L1 6337 6584 0 1 1482 535 350 82 29 chr1 117615934 117616377 -79579055 + Lx8 LINE L1 6385 6843 -853 1 1482 365 231 147 96 chr1 117616548 117616725 -79578707 - MLT1A0 LTR MaLR -179 186 1 1 1482 644 304 17 108 chr1 117616796 117617028 -79578404 + B3A SINE B2 2 212 -4 1 1482 211 279 32 16 chr1 117617067 117617129 -79578303 + ID4 SINE ID 2 64 -19 1 1482 474 18 0 0 chr1 117617141 117617196 -79578236 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1482 254 288 0 0 chr1 117618040 117618113 -79577319 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 1 1482 724 307 40 22 chr1 117618113 117618377 -79577055 - MT2A LTR ERVL -19 535 252 1 1482 460 318 9 92 chr1 117619480 117619698 -79575734 + B3A SINE B2 5 204 -12 1 1482 513 115 0 0 chr1 117620235 117620313 -79575119 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1482 8041 55 0 0 chr1 117620313 117621380 -79574052 - L1Md_F2 LINE L1 -18 6564 5498 1 1482 4025 58 0 0 chr1 117621380 117621897 -79573535 + L1_Mm LINE L1 2120 2636 -3247 1 1482 182 156 0 22 chr1 117622047 117622093 -79573339 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1482 209 205 24 49 chr1 117622954 117623036 -79572396 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 1 1482 591 242 81 0 chr1 117623317 117623483 -79571949 - ORR1E LTR MaLR -191 179 1 1 1482 360 0 0 0 chr1 117623523 117623563 -79571869 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1482 214 151 18 36 chr1 117623884 117623939 -79571493 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1482 212 0 36 0 chr1 117624015 117624043 -79571389 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1482 682 293 25 15 chr1 117624524 117624725 -79570707 + ID_B1 SINE B4 5 207 -17 1 1482 954 160 0 0 chr1 117624767 117624936 -79570496 + GA-rich Low_complexity Low_complexity 3 171 0 2 1482 204 111 0 0 chr1 117625593 117625629 -79569803 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1482 609 239 39 0 chr1 117625634 117625764 -79569668 - B1_Mus2 SINE Alu -2 145 11 2 1482 819 289 52 13 chr1 117625958 117626276 -79569156 - ORR1E LTR MaLR -2 357 9 2 1482 936 288 67 10 chr1 117626994 117627383 -79568049 - Lx8 LINE L1 -394 7079 6669 2 1482 23 0 0 0 chr1 117627465 117627488 -79567944 + AT_rich Low_complexity Low_complexity 1 23 0 2 1482 1159 140 0 25 chr1 117627693 117627891 -79567541 - B2_Mm2 SINE B2 -1 194 2 2 1482 189 0 0 0 chr1 117628370 117628391 -79567041 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 2 1482 192 97 0 0 chr1 117628762 117628793 -79566639 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1482 2572 248 63 19 chr1 117628966 117629598 -79565834 - Lx6 LINE L1 -7 7453 6794 2 1482 207 220 0 32 chr1 117629675 117629769 -79565663 + GA-rich Low_complexity Low_complexity 2 92 0 2 1482 402 308 23 23 chr1 117629807 117629940 -79565492 - B3A SINE B2 -64 134 2 2 1482 899 246 94 20 chr1 117631190 117631435 -79563997 + MTE2b LTR MaLR 2 264 -115 2 1482 249 33 0 0 chr1 117632234 117632264 -79563168 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 2 1482 490 330 61 11 chr1 117633783 117634044 -79561388 + B4A SINE B4 1 274 -18 2 1482 546 16 0 0 chr1 117634101 117634164 -79561268 + (CATA)n Simple_repeat Simple_repeat 2 64 0 2 1482 495 0 0 0 chr1 117634168 117634223 -79561209 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1482 23 86 0 0 chr1 117634501 117634559 -79560873 + AT_rich Low_complexity Low_complexity 1 58 0 2 1482 342 45 0 0 chr1 117634690 117634734 -79560698 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1482 379 326 6 27 chr1 117634748 117634931 -79560501 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 2 1482 528 133 10 0 chr1 117635734 117635832 -79559600 + L1_Mus2 LINE L1 6467 6565 -1 2 1482 2284 68 0 16 chr1 117635820 117636132 -79559300 + L1Md_F2 LINE L1 6273 6579 -3 2 1482 266 331 37 75 chr1 117636369 117636503 -79558929 - MLT1D LTR MaLR -116 389 261 2 1482 608 329 71 44 chr1 117636671 117637037 -79558395 - Lx8 LINE L1 -438 7035 6660 2 1482 21 36 0 0 chr1 117637077 117637105 -79558327 + AT_rich Low_complexity Low_complexity 1 28 0 2 1482 310 336 22 0 chr1 117637446 117637580 -79557852 + B3 SINE B2 80 216 0 2 1482 378 338 36 7 chr1 117637671 117637808 -79557624 - RSINE1 SINE B4 -23 142 2 2 1482 771 105 30 0 chr1 117637999 117638132 -79557300 - L1_Mus3 LINE L1 -5 6633 6497 2 1482 2205 81 10 0 chr1 117638132 117638427 -79557005 + L1_Mus3 LINE L1 6171 6468 -98 2 1482 198 0 0 0 chr1 117638560 117638582 -79556850 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1482 207 179 0 0 chr1 117638720 117638759 -79556673 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 1482 566 304 117 67 chr1 117638770 117639010 -79556422 - B4 SINE B4 -6 286 35 2 1482 389 53 0 18 chr1 117641072 117641129 -79554303 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1482 23 33 0 0 chr1 117641171 117641201 -79554231 + AT_rich Low_complexity Low_complexity 1 30 0 2 1482 310 189 50 91 chr1 117642125 117642224 -79553208 - RMER15 LTR ERVL -480 95 1 2 1482 218 394 82 78 chr1 117642935 117643180 -79552252 - B4A SINE B4 -20 272 27 2 1482 300 260 10 10 chr1 117643226 117643327 -79552105 + L1_Rod LINE L1 5716 5816 -31 2 1482 260 376 89 5 chr1 117643745 117643935 -79551497 - L3 LINE CR1 -280 4209 4004 2 1482 21 0 0 0 chr1 117644175 117644196 -79551236 + AT_rich Low_complexity Low_complexity 1 21 0 2 1482 479 302 17 66 chr1 117644353 117644534 -79550898 + B4A SINE B4 43 214 -78 2 1482 1780 88 0 4 chr1 117644540 117644780 -79550652 - L1_Mus2 LINE L1 -1 6565 6327 2 1482 260 125 18 0 chr1 117644797 117644853 -79550579 + Lx2 LINE L1 6941 6997 0 2 1482 577 296 61 33 chr1 117644863 117645225 -79550207 - L1MD LINE L1 -712 5647 5276 2 1482 322 291 101 78 chr1 117645385 117645691 -79549741 - L1MD LINE L1 -1242 4904 4592 2 1482 340 288 17 75 chr1 117646131 117646304 -79549128 - RSINE1 SINE B4 0 165 3 2 1482 316 264 82 8 chr1 117646470 117646592 -79548840 - L1MDa LINE L1 -2184 4353 4223 2 1482 420 67 0 0 chr1 117646679 117646739 -79548693 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1482 1369 40 6 0 chr1 117646882 117647057 -79548375 + L1Md_F2 LINE L1 6393 6568 -14 2 1482 3542 78 145 0 chr1 117647059 117647582 -79547850 + Lx3_Mus LINE L1 6411 7009 0 2 1482 307 336 36 75 chr1 117647911 117648191 -79547241 - L1MDa LINE L1 -6338 295 27 2 1482 386 281 16 55 chr1 117648325 117648453 -79546979 + B3A SINE B2 1 123 -75 2 1482 8440 32 0 0 chr1 117648479 117649474 -79545958 + L1Md_T LINE L1 5588 6582 0 2 1482 867 50 109 0 chr1 117649500 117649619 -79545813 + B1_Mus2 SINE Alu 1 132 -15 2 1482 202 389 28 28 chr1 117649924 117650067 -79545365 - MIRb SINE MIR -71 197 55 2 1482 307 203 14 0 chr1 117650295 117650364 -79545068 + L1_Mur1 LINE L1 684 753 -6231 2 1482 2616 178 113 32 chr1 117650523 117651156 -79544276 + L1_Mur1 LINE L1 709 1414 -4472 2 1482 483 130 0 0 chr1 117651156 117651233 -79544199 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1482 2616 150 21 48 chr1 117651233 117651575 -79543857 + L1_Mur1 LINE L1 1415 1746 -4140 2 1482 4245 161 28 8 chr1 117651580 117652412 -79543020 + L1_Mur1 LINE L1 4491 5338 -548 2 1482 33867 107 22 14 chr1 117652412 117658885 -79536547 - L1Md_F2 LINE L1 0 6582 217 2 1482 1034 150 56 0 chr1 117658891 117659071 -79536361 - B2_Mm2 SINE B2 -4 191 2 2 1482 2838 193 5 25 chr1 117659077 117659213 -79536219 + L1_Mur1 LINE L1 5331 5453 -433 2 1482 257 0 30 0 chr1 117659213 117659246 -79536186 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1482 2838 193 5 25 chr1 117659246 117659667 -79535765 + L1_Mur1 LINE L1 5454 5877 -9 2 1482 3563 165 16 0 chr1 117659668 117660286 -79535146 + Lx2B LINE L1 6373 7000 0 2 1482 1139 197 89 105 chr1 117661709 117661899 -79533533 + ORR1D1 LTR MaLR 1 178 -196 2 1482 545 0 15 0 chr1 117661899 117661964 -79533468 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1482 1139 197 89 105 chr1 117661964 117662153 -79533279 + ORR1D1 LTR MaLR 179 374 0 2 1482 236 301 49 114 chr1 117662153 117662337 -79533095 - B2_Mm2 SINE B2 -22 173 2 2 1482 402 330 31 75 chr1 117662375 117662601 -79532831 + ID_B1 SINE B4 8 223 -1 2 1482 494 341 72 40 chr1 117663091 117663108 -79532324 - B4 SINE B4 -4 288 271 2 1482 473 71 14 0 chr1 117663108 117663178 -79532254 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1482 494 341 72 40 chr1 117663178 117663438 -79531994 - B4 SINE B4 -22 270 3 2 1482 365 342 32 89 chr1 117663981 117664296 -79531136 - RSINE1 SINE B4 -6 286 12 2 1482 1096 96 0 0 chr1 117664322 117664468 -79530964 + B1_Mus2 SINE Alu 2 147 0 2 1482 228 67 0 0 chr1 117664472 117664502 -79530930 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2 1482 492 369 54 78 chr1 117665514 117665808 -79529624 + B4A SINE B4 6 292 0 2 1482 333 68 0 0 chr1 117665845 117665889 -79529543 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 1482 4214 95 58 34 chr1 117666045 117666793 -79528639 - L1_Mur1 LINE L1 -1915 1997 1235 2 1482 580 324 38 131 chr1 117667489 117667908 -79527524 - MTC LTR MaLR -41 380 1 2 1482 1933 232 55 19 chr1 117668374 117668861 -79526571 + RLTR16 LTR ERVK 1 505 0 2 1482 207 304 16 89 chr1 117670313 117670436 -79524996 + MIR SINE MIR 132 245 -17 2 1482 300 301 57 19 chr1 117670448 117670553 -79524879 + B4 SINE B4 4 112 -180 2 1482 1186 76 81 0 chr1 117670553 117670725 -79524707 - L1Md_F2 LINE L1 -13 6569 6384 2 1482 1730 50 40 9 chr1 117670727 117670951 -79524481 + L1Md_F2 LINE L1 6150 6380 -202 2 1482 233 320 17 112 chr1 117670951 117671067 -79524365 + PB1D7 SINE Alu 10 114 -6 2 1482 1066 88 0 0 chr1 117671174 117671311 -79524121 + B1_Mus2 SINE Alu 2 138 -9 2 1482 324 70 0 0 chr1 117671311 117671354 -79524078 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1482 266 50 25 0 chr1 117671384 117671424 -79524008 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1482 504 0 0 0 chr1 117671614 117671670 -79523762 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1482 381 353 132 19 chr1 117672020 117672277 -79523155 + B4A SINE B4 3 288 -4 2 1482 611 323 107 20 chr1 117672695 117672948 -79522484 + B4A SINE B4 6 280 -12 2 1482 232 303 13 0 chr1 117673135 117673211 -79522221 + B4A SINE B4 172 248 -44 2 1482 465 335 76 0 chr1 117673459 117673644 -79521788 + MTD LTR MaLR 1 199 -220 2 1482 187 141 22 56 chr1 117673650 117673740 -79521692 + A-rich Low_complexity Low_complexity 2 88 0 2 1482 458 301 78 36 chr1 117673743 117673936 -79521496 + MTD LTR MaLR 169 369 -10 2 1482 218 32 32 0 chr1 117673937 117673968 -79521464 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1482 3251 253 76 49 chr1 117674016 117675089 -79520343 + RLTR25A LTR ERVK 2 1103 0 2 1482 23 86 0 0 chr1 117675226 117675284 -79520148 + AT_rich Low_complexity Low_complexity 1 58 0 2 1482 426 20 0 0 chr1 117675285 117675336 -79520096 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1482 458 325 103 11 chr1 117675336 117675367 -79520065 - B3 SINE B2 -22 194 164 2 1482 459 35 0 0 chr1 117675367 117675424 -79520008 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1482 458 325 103 11 chr1 117675424 117675566 -79519866 - B3 SINE B2 -53 163 6 2 1482 26 30 0 0 chr1 117677563 117677596 -79517836 + AT_rich Low_complexity Low_complexity 1 33 0 2 1482 296 206 13 27 chr1 117678948 117679023 -79516409 + CT-rich Low_complexity Low_complexity 2 75 0 2 1482 298 339 41 51 chr1 117679371 117679567 -79515865 + ID_B1 SINE B4 6 199 -25 2 1482 1207 18 23 12 chr1 117679721 117679892 -79515540 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 2 1482 357 24 0 0 chr1 117679912 117679954 -79515478 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1482 252 345 71 18 chr1 117679962 117680074 -79515358 - RSINE1 SINE B4 -45 120 3 2 1482 686 346 16 69 chr1 117680821 117681125 -79514307 - B4A SINE B4 0 292 5 2 1482 243 0 0 0 chr1 117682166 117682193 -79513239 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1482 265 297 11 0 chr1 117682268 117682359 -79513073 + (TATG)n Simple_repeat Simple_repeat 3 94 0 2 1482 315 242 31 31 chr1 117682359 117682457 -79512975 + GA-rich Low_complexity Low_complexity 4 101 0 2 1482 672 32 32 0 chr1 117682472 117682567 -79512865 + (GGGAGA)n Simple_repeat Simple_repeat 6 103 0 2 1482 256 292 283 0 chr1 117683277 117683383 -79512049 - B4 SINE B4 -80 212 77 3 1482 266 292 61 9 chr1 117683401 117683515 -79511917 - Lx8 LINE L1 -642 6831 6712 3 1482 3131 168 39 19 chr1 117683592 117684179 -79511253 - Lx4A LINE L1 -1 7057 6459 3 1482 423 312 9 9 chr1 117684179 117684292 -79511140 + ID_B1 SINE B4 104 216 -8 3 1482 533 296 126 31 chr1 117684996 117685289 -79510143 - RMER5 LTR ERV1 0 534 214 3 1482 189 94 0 0 chr1 117685717 117685749 -79509683 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1482 23 54 0 0 chr1 117686379 117686416 -79509016 + AT_rich Low_complexity Low_complexity 1 37 0 3 1482 207 114 0 0 chr1 117686474 117686509 -79508923 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 3 1482 211 308 0 15 chr1 117686513 117686579 -79508853 + GA-rich Low_complexity Low_complexity 1 65 0 3 1482 4427 161 8 27 chr1 117686851 117687732 -79507700 - Lx LINE L1 -1207 4676 3813 3 1482 6402 157 35 3 chr1 117687735 117689640 -79505792 + Lx LINE L1 4701 6646 -8 3 1482 766 269 41 38 chr1 117690105 117690371 -79505061 + ORR1D2 LTR MaLR 104 370 0 3 1482 1722 239 6 6 chr1 117690449 117690815 -79504617 + ORR1D1 LTR MaLR 3 368 -6 3 1482 2146 238 33 19 chr1 117691809 117692324 -79503108 + RLTR11A LTR ERVK 7 528 0 3 1482 646 336 102 0 chr1 117693813 117694078 -79501354 + B4A SINE B4 1 292 0 3 1482 378 0 0 0 chr1 117694144 117694186 -79501246 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1482 2132 133 12 3 chr1 117694396 117694716 -79500716 + L1_Mus4 LINE L1 6283 6604 -32 3 1482 193 0 29 59 chr1 117694716 117694750 -79500682 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1482 2132 133 12 3 chr1 117694750 117694775 -79500657 + L1_Mus4 LINE L1 6605 6630 -6 3 1482 306 0 0 0 chr1 117695196 117695230 -79500202 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1482 462 36 0 0 chr1 117695230 117695285 -79500147 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1482 456 51 0 0 chr1 117695534 117695593 -79499839 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1482 35098 36 0 3 chr1 117696010 117701147 -79494285 + L1Md_T LINE L1 73 5305 -581 3 1482 6604 9 0 0 chr1 117701147 117701884 -79493548 + L1Md_T LINE L1 5834 6570 -12 3 1482 35098 43 0 4 chr1 117701884 117702182 -79493250 + L1Md_T LINE L1 5306 5589 -297 3 185 8996 4 0 0 chr1 117702183 117703178 -79492254 + L1Md_T LINE L1 5591 6585 0 3 1483 1054 295 88 21 chr1 117703243 117703530 -79491902 - MTEb LTR MaLR 0 379 83 3 1483 432 0 0 0 chr1 117703530 117703578 -79491854 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1483 1054 295 88 21 chr1 117703578 117703629 -79491803 - MTEb LTR MaLR -297 82 18 3 1483 444 358 23 71 chr1 117706666 117706877 -79488555 + B4A SINE B4 1 202 -90 3 1483 423 0 0 0 chr1 117707433 117707480 -79487952 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 3 1483 486 33 0 0 chr1 117708161 117708221 -79487211 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 3 1483 226 213 21 0 chr1 117708299 117708346 -79487086 - L1M1 LINE L1 -406 5894 5847 3 1483 489 71 0 0 chr1 117708941 117709011 -79486421 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1483 536 151 24 32 chr1 117709766 117709889 -79485543 - L1Md_F3 LINE L1 -1 6583 6462 3 1483 570 355 70 31 chr1 117710054 117710310 -79485122 + B4 SINE B4 1 266 -26 3 1483 363 23 0 0 chr1 117710311 117710355 -79485077 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1483 323 296 0 0 chr1 117710752 117710850 -79484582 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1483 358 168 17 26 chr1 117711535 117711651 -79483781 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 1483 203 250 49 24 chr1 117711684 117711766 -79483666 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 3 1483 455 402 10 24 chr1 117712151 117712360 -79483072 - ID_B1 SINE B4 0 224 19 3 1483 288 0 0 0 chr1 117713234 117713266 -79482166 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1483 21 0 0 0 chr1 117713413 117713434 -79481998 + AT_rich Low_complexity Low_complexity 1 21 0 3 1483 204 214 58 10 chr1 117713679 117713783 -79481649 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1483 22 35 0 0 chr1 117713809 117713838 -79481594 + AT_rich Low_complexity Low_complexity 1 29 0 3 1483 396 319 31 105 chr1 117714043 117714082 -79481350 + MER2 DNA MER2_type 104 146 -199 3 1483 4053 57 2 4 chr1 117714082 117714595 -79480837 - L1Md_F2 LINE L1 -1 6581 6070 3 1483 396 319 31 105 chr1 117714595 117714783 -79480649 + MER2 DNA MER2_type 147 314 -31 3 1483 669 25 0 0 chr1 117714797 117714876 -79480556 + (TC)n Simple_repeat Simple_repeat 2 80 0 3 1483 311 331 29 6 chr1 117714901 117715133 -79480299 + (TG)n Simple_repeat Simple_repeat 1 237 0 3 1483 324 0 0 0 chr1 117716301 117716337 -79479095 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1483 362 319 90 72 chr1 117716576 117716853 -79478579 - MLT1A0 LTR MaLR -9 356 75 3 1483 479 31 15 0 chr1 117716889 117716954 -79478478 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1483 258 81 0 0 chr1 117716982 117717019 -79478413 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1483 1933 173 0 6 chr1 117717958 117718272 -79477160 - Lx4A LINE L1 -564 6494 6183 3 1483 2726 169 111 6 chr1 117718267 117718780 -79476652 + Lx4A LINE L1 6490 7056 -2 3 1483 246 95 0 0 chr1 117719555 117719597 -79475835 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 3 1483 494 16 0 16 chr1 117719600 117719664 -79475768 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 1483 199 0 31 31 chr1 117719664 117719695 -79475737 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1483 835 50 193 0 chr1 117719705 117719824 -79475608 - B1_Mus1 SINE Alu -6 142 1 3 1483 419 244 24 16 chr1 117720225 117720350 -79475082 - Lx5 LINE L1 -970 6080 5955 3 1483 1881 204 2 5 chr1 117720355 117720749 -79474683 - L1_Mur2 LINE L1 -852 5025 4633 3 1483 3299 232 33 19 chr1 117720749 117721483 -79473949 + Lx5 LINE L1 6076 6819 -231 3 1483 1083 16 0 0 chr1 117721491 117721616 -79473816 + (TC)n Simple_repeat Simple_repeat 2 126 0 3 1483 444 19 0 0 chr1 117721616 117721668 -79473764 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1483 661 339 47 14 chr1 117721692 117721970 -79473462 - B4 SINE B4 -4 288 2 3 1483 473 305 144 31 chr1 117721970 117722227 -79473205 - MLT1A0 LTR MaLR -68 297 12 3 1483 920 253 222 10 chr1 117722252 117722563 -79472869 - MTEb LTR MaLR -2 377 1 3 1483 1129 289 52 12 chr1 117723080 117723483 -79471949 + MTD LTR MaLR 1 419 0 3 1483 192 362 76 32 chr1 117723534 117723691 -79471741 - MER5B DNA MER1_type -14 164 1 3 1483 560 361 27 30 chr1 117723704 117724038 -79471394 - L3 LINE CR1 -65 4424 4092 3 1483 309 118 0 0 chr1 117724230 117724281 -79471151 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1483 399 100 0 0 chr1 117724921 117724991 -79470441 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1483 450 49 0 0 chr1 117724991 117725052 -79470380 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1483 415 345 99 54 chr1 117725081 117725323 -79470109 - B4 SINE B4 -16 276 24 3 1483 234 290 14 14 chr1 117725652 117725722 -79469710 - MTEb LTR MaLR -31 348 279 3 1483 22 0 0 0 chr1 117726298 117726320 -79469112 + AT_rich Low_complexity Low_complexity 1 22 0 3 1483 571 404 0 0 chr1 117726590 117726783 -79468649 - B4A SINE B4 -5 287 95 3 1483 322 134 0 29 chr1 117727004 117727073 -79468359 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1483 642 332 46 14 chr1 117727219 117727436 -79467996 - MER58A DNA MER1_type 0 224 1 3 1483 219 296 56 80 chr1 117727486 117727611 -79467821 + MIR3 SINE MIR 77 198 -10 3 1483 581 0 14 0 chr1 117729157 117729226 -79466206 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1483 992 322 96 18 chr1 117729571 117729906 -79465526 + MTE2b LTR MaLR 19 379 0 3 1483 218 296 127 0 chr1 117730552 117730623 -79464809 - B4 SINE B4 -211 81 2 3 1483 267 314 196 13 chr1 117730878 117731036 -79464396 - MIR3 SINE MIR 0 208 22 3 1483 491 330 59 22 chr1 117731568 117731841 -79463591 - B4A SINE B4 -8 284 2 3 1483 1298 90 20 5 chr1 117731928 117732129 -79463303 - L1_Mus3 LINE L1 -3 6635 6432 3 1483 1115 82 7 0 chr1 117733099 117733245 -79462187 - B1_Mus1 SINE Alu 0 148 2 3 1483 885 242 19 19 chr1 117733248 117733463 -79461969 - B3 SINE B2 -1 215 1 3 1483 24 0 0 0 chr1 117734014 117734038 -79461394 + AT_rich Low_complexity Low_complexity 1 24 0 3 1483 23 0 0 0 chr1 117734599 117734622 -79460810 + AT_rich Low_complexity Low_complexity 1 23 0 3 1483 345 362 8 8 chr1 117734677 117734805 -79460627 - B4A SINE B4 -6 286 159 3 1483 239 246 57 14 chr1 117734861 117734931 -79460501 - RSINE1 SINE B4 -89 76 4 3 1483 420 346 68 12 chr1 117735767 117735928 -79459504 + B4 SINE B4 3 172 -120 3 1483 495 0 0 0 chr1 117735928 117735983 -79459449 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1483 333 0 0 0 chr1 117735983 117736019 -79459413 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1483 21 0 0 0 chr1 117736275 117736296 -79459136 + AT_rich Low_complexity Low_complexity 1 21 0 3 1483 603 0 0 0 chr1 117736870 117736937 -79458495 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1483 1090 262 101 6 chr1 117737106 117737432 -79458000 - MTE2b LTR MaLR 0 379 23 3 1483 339 65 0 0 chr1 117738693 117738739 -79456693 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1483 500 314 119 35 chr1 117738810 117739011 -79456421 - B4 SINE B4 -10 282 65 3 1483 569 336 103 40 chr1 117741152 117741453 -79453979 + MTE2a LTR MaLR 60 379 0 3 1483 420 194 16 8 chr1 117741857 117741982 -79453450 + (TA)n Simple_repeat Simple_repeat 1 126 0 3 1483 287 378 10 0 chr1 117742139 117742237 -79453195 + PB1 SINE Alu 24 122 -5 3 1483 38 22 0 0 chr1 117742243 117742288 -79453144 + AT_rich Low_complexity Low_complexity 1 45 0 3 1483 459 344 70 65 chr1 117742979 117743209 -79452223 - B4A SINE B4 -48 244 14 3 1483 213 211 0 0 chr1 117743310 117743367 -79452065 + CT-rich Low_complexity Low_complexity 2 58 0 3 1483 208 154 58 0 chr1 117743453 117743505 -79451927 + T-rich Low_complexity Low_complexity 3 57 0 4 1483 522 129 0 0 chr1 117743960 117744045 -79451387 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 1483 950 159 53 6 chr1 117744050 117744221 -79451211 - B2_Mm2 SINE B2 -16 179 1 4 1483 2338 199 106 22 chr1 117744337 117744835 -79450597 - RLTR20A LTR ERVK -1 540 1 4 1483 493 357 46 8 chr1 117745245 117745482 -79449950 + B4A SINE B4 2 247 -45 4 1483 354 304 30 108 chr1 117745476 117745642 -79449790 + RSINE1 SINE B4 13 165 0 4 1483 591 53 0 0 chr1 117745820 117745895 -79449537 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1483 201 211 0 0 chr1 117745895 117745952 -79449480 + GA-rich Low_complexity Low_complexity 1 57 0 4 1483 379 342 43 0 chr1 117746955 117747072 -79448360 + B4A SINE B4 2 123 -169 4 1483 680 290 9 9 chr1 117747174 117747390 -79448042 + B3 SINE B2 1 216 0 4 1483 917 366 39 0 chr1 117747984 117748342 -79447090 - MTEa LTR MaLR -2 377 6 4 1483 591 340 19 99 chr1 117749310 117749623 -79445809 - B4 SINE B4 0 292 5 4 1483 448 299 195 7 chr1 117750047 117750330 -79445102 + Lx8 LINE L1 6902 7237 -236 4 1483 280 281 74 51 chr1 117750353 117750529 -79444903 + Lx8 LINE L1 7289 7468 -5 4 1483 526 306 32 55 chr1 117750785 117751003 -79444429 + B3 SINE B2 1 213 -3 4 1483 661 255 0 0 chr1 117751003 117751152 -79444280 + B1_Mur2 SINE Alu 1 149 0 4 1483 590 281 26 7 chr1 117752589 117752743 -79442689 + B3A SINE B2 8 164 -34 4 1483 720 111 0 0 chr1 117752755 117752863 -79442569 + (CA)n Simple_repeat Simple_repeat 2 109 0 4 1483 1418 283 117 9 chr1 117752893 117753436 -79441996 - Lx6 LINE L1 -26 7434 6459 4 1483 424 128 32 11 chr1 117753451 117753546 -79441886 + T-rich Low_complexity Low_complexity 1 97 0 4 1483 752 40 20 0 chr1 117753551 117753650 -79441782 + (TTCC)n Simple_repeat Simple_repeat 3 103 0 4 1483 610 339 5 0 chr1 117753653 117753871 -79441561 - Lx6 LINE L1 -724 6736 6518 4 1483 183 205 0 0 chr1 117753881 117753920 -79441512 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1483 723 333 54 25 chr1 117754451 117754537 -79440895 - B4 SINE B4 0 292 208 4 1483 185 0 40 0 chr1 117754537 117754562 -79440870 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1483 723 333 54 25 chr1 117754562 117754752 -79440680 - B4 SINE B4 -85 207 8 4 1483 450 305 125 55 chr1 117755341 117755612 -79439820 + B4A SINE B4 18 279 -13 4 1483 1696 232 29 7 chr1 117756417 117756829 -79438603 + MTC LTR MaLR 1 421 0 4 1483 2866 142 7 9 chr1 117757408 117757422 -79438010 - Lx3A LINE L1 0 6981 6968 4 1483 360 0 0 0 chr1 117757422 117757462 -79437970 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 4 1483 2866 142 7 9 chr1 117757462 117757910 -79437522 - Lx3A LINE L1 -14 6967 6521 4 1483 7208 94 42 109 chr1 117757911 117759612 -79435820 - Lx3A LINE L1 -945 6064 4521 4 1483 291 274 20 59 chr1 117759612 117759713 -79435719 - RLTR25B LTR ERVK -490 538 442 4 1483 787 90 9 0 chr1 117759642 117759753 -79435679 - B1_Mus1 SINE Alu -36 112 1 4 1483 297 279 7 14 chr1 117759753 117759784 -79435648 - ORR1B1-int LTR MaLR -862 647 618 4 1483 603 27 0 0 chr1 117759891 117759964 -79435468 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1483 307 333 0 27 chr1 117760187 117760298 -79435134 - PB1D10 SINE Alu -8 109 2 4 1483 798 344 34 19 chr1 117761126 117761390 -79434042 + B4A SINE B4 5 272 -20 4 1483 275 169 14 0 chr1 117761451 117761522 -79433910 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1483 7581 39 16 5 chr1 117761878 117763081 -79432351 - L1Md_F2 LINE L1 -13 6569 5355 4 1483 1666 64 0 37 chr1 117763065 117763308 -79432124 - L1Md_F2 LINE L1 -20 6562 6329 4 1483 721 206 15 0 chr1 117763497 117763633 -79431799 + B1_Mus2 SINE Alu 10 147 0 4 1483 1039 281 116 0 chr1 117763676 117763996 -79431436 - MTE2b LTR MaLR -20 359 3 4 1483 6300 122 10 4 chr1 117764233 117765337 -79430095 + L1_Mus3 LINE L1 5528 6638 0 4 1483 303 319 51 41 chr1 117765826 117765924 -79429508 - RSINE1 SINE B4 -63 102 4 4 1483 612 359 0 0 chr1 117766571 117766727 -79428705 - RSINE1 SINE B4 -2 163 8 4 1483 252 266 31 15 chr1 117766737 117766802 -79428630 - B4A SINE B4 -226 66 1 4 1483 805 19 0 0 chr1 117768028 117768135 -79427297 - L1Md_T LINE L1 -1 6581 6475 4 1483 717 288 195 3 chr1 117768275 117768578 -79426854 - MTEb LTR MaLR -13 366 6 4 1483 255 345 72 48 chr1 117768937 117769269 -79426163 + L2 LINE L2 2415 2754 -665 4 1483 1003 302 74 0 chr1 117769602 117769953 -79425479 - MTEa LTR MaLR 0 379 3 4 1483 531 0 0 0 chr1 117770283 117770342 -79425090 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1483 204 209 23 0 chr1 117770342 117770385 -79425047 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1483 426 381 60 50 chr1 117770402 117770684 -79424748 - B4A SINE B4 0 292 8 4 1483 26 74 0 0 chr1 117772042 117772096 -79423336 + AT_rich Low_complexity Low_complexity 1 54 0 4 1483 396 0 0 0 chr1 117772265 117772309 -79423123 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1483 530 338 16 1 chr1 117772310 117772489 -79422943 + B3A SINE B2 33 216 0 4 1483 189 211 0 0 chr1 117772554 117772606 -79422826 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 4 1483 228 228 0 0 chr1 117772615 117772672 -79422760 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 4 1483 240 86 0 0 chr1 117772688 117772723 -79422709 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1483 1113 128 0 0 chr1 117772745 117772925 -79422507 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1483 212 0 0 35 chr1 117772925 117772954 -79422478 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 4 1483 2701 90 8 0 chr1 117773187 117773564 -79421868 + L1_Mus1 LINE L1 6188 6567 0 4 1483 280 50 0 4 chr1 117773711 117773768 -79421664 - L1_Mus2 LINE L1 -14 6568 6513 4 1483 1990 69 0 0 chr1 117773761 117774023 -79421409 - L1_Mus2 LINE L1 -323 6243 5982 4 1483 717 323 55 11 chr1 117774457 117774896 -79420536 - L1MA4 LINE L1 -393 5907 5450 4 1483 666 103 20 13 chr1 117774943 117775060 -79420372 - B1_Mus1 SINE Alu -5 115 1 4 1483 911 281 79 22 chr1 117775217 117775529 -79419903 + MTEa LTR MaLR 6 378 -41 4 1483 1752 45 5 0 chr1 117775531 117775753 -79419679 + MTA_Mm LTR MaLR 1 223 -173 4 1483 2144 120 29 57 chr1 117775760 117776336 -79419096 + MTA_Mm-int LTR MaLR 1 396 0 4 1483 2220 355 36 15 chr1 117777247 117778481 -79416951 - RodERV21-int LTR ERV1 -214 4777 3518 4 1483 276 149 0 0 chr1 117779132 117779179 -79416253 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1483 765 329 42 5 chr1 117780326 117780708 -79414724 + Lx8 LINE L1 7050 7445 -28 4 1483 228 35 0 0 chr1 117780715 117780744 -79414688 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1483 690 109 0 0 chr1 117780968 117781087 -79414345 + (GAA)n Simple_repeat Simple_repeat 2 120 0 4 1483 21 36 0 0 chr1 117781763 117781791 -79413641 + AT_rich Low_complexity Low_complexity 1 28 0 4 1483 2551 22 4 222 chr1 117781834 117782303 -79413129 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1483 27653 19 1 0 chr1 117782303 117785572 -79409860 - IAPEz-int LTR ERVK 0 6481 3210 4 1483 6778 77 125 72 chr1 117785571 117786812 -79408620 - IAPEz-int LTR ERVK -5168 1313 8 4 1483 2541 25 4 222 chr1 117786812 117787281 -79408151 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1483 3271 190 7 3 chr1 117788398 117789005 -79406427 - RMER12 LTR ERVK -713 609 1 4 1483 290 289 46 101 chr1 117789077 117789114 -79406318 - MT2A LTR ERVL 0 533 495 4 1483 273 29 0 0 chr1 117789114 117789148 -79406284 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1483 664 325 43 85 chr1 117789148 117789689 -79405743 - MT2A LTR ERVL -39 494 6 4 1483 287 237 92 0 chr1 117789752 117789828 -79405604 + PB1D10 SINE Alu 34 116 -1 4 1483 477 34 0 0 chr1 117789874 117789933 -79405499 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1483 3408 30 5 0 chr1 117790091 117790485 -79404947 + MTA_Mm LTR MaLR 1 396 0 4 1483 456 19 0 0 chr1 117790885 117790938 -79404494 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1483 1988 99 59 7 chr1 117790938 117791244 -79404188 - RLTRETN_Mm LTR ERVK 0 322 1 4 1483 804 314 44 33 chr1 117791323 117791593 -79403839 - B4 SINE B4 -14 278 6 4 1483 12004 183 95 42 chr1 117791663 117792233 -79403199 - L1_Mur2 LINE L1 -1303 4574 4064 4 1483 1940 125 18 64 chr1 117792233 117792575 -79402857 - ORR1A3 LTR MaLR 0 326 1 4 1483 12004 183 95 42 chr1 117792575 117793184 -79402248 - L1_Mur2 LINE L1 -1814 4063 3483 4 1483 351 0 0 0 chr1 117793184 117793223 -79402209 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1483 12004 197 83 34 chr1 117793223 117795546 -79399886 - L1_Mur2 LINE L1 -2395 3482 890 4 1483 344 59 0 19 chr1 117796699 117796751 -79398681 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1483 233 109 22 0 chr1 117797824 117797870 -79397562 + (TTG)n Simple_repeat Simple_repeat 1 47 0 4 1483 232 266 0 48 chr1 117797935 117798018 -79397414 + (TATG)n Simple_repeat Simple_repeat 4 82 0 4 1483 269 164 91 0 chr1 117798109 117798164 -79397268 - B4 SINE B4 -152 140 81 4 1483 554 157 0 0 chr1 117798184 117798286 -79397146 - Lx4A LINE L1 -1 7057 6956 4 1483 437 337 53 35 chr1 117799080 117799249 -79396183 + B4A SINE B4 28 199 -93 4 1483 497 297 47 43 chr1 117799263 117799474 -79395958 + MLT2B2 LTR ERVL 321 532 -30 4 1483 382 247 164 55 chr1 117800040 117800241 -79395191 + ID_B1 SINE B4 1 223 -1 4 1483 2341 211 25 135 chr1 117800403 117801090 -79394342 + RMER19C LTR ERVK 1 611 0 4 1483 25 0 0 0 chr1 117801132 117801157 -79394275 + AT_rich Low_complexity Low_complexity 1 25 0 4 1483 2601 38 3 0 chr1 117801176 117801492 -79393940 + L1Md_F2 LINE L1 6266 6582 0 4 1483 244 333 0 0 chr1 117801807 117801873 -79393559 + LTR16C LTR ERVL 423 488 -1 4 1483 431 293 77 77 chr1 117802058 117802239 -79393193 - B3A SINE B2 -16 182 2 4 1483 2726 209 14 14 chr1 117802405 117802920 -79392512 - RMER20A LTR ERVK -1 515 1 4 1483 202 284 0 29 chr1 117803207 117803276 -79392156 + (TTA)n Simple_repeat Simple_repeat 3 69 0 4 1483 209 214 0 23 chr1 117803215 117803258 -79392174 + (CTA)n Simple_repeat Simple_repeat 2 43 0 4 1483 209 118 59 68 chr1 117803296 117803414 -79392018 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 4 1483 791 329 27 0 chr1 117803437 117803662 -79391770 - B4 SINE B4 -56 236 6 5 1483 321 348 111 6 chr1 117803939 117804101 -79391331 + B4A SINE B4 26 204 -88 5 1483 638 298 176 26 chr1 117804105 117804446 -79390986 - MTD LTR MaLR -14 405 14 5 1483 651 276 7 0 chr1 117805162 117805314 -79390118 + RSINE1 SINE B4 11 163 -2 5 1483 227 314 115 44 chr1 117805314 117805345 -79390087 + B3 SINE B2 10 205 -11 5 1483 844 298 29 0 chr1 117805731 117805939 -79389493 + ID_B1 SINE B4 11 224 0 5 1483 181 91 22 43 chr1 117806084 117806130 -79389302 + (TTG)n Simple_repeat Simple_repeat 2 46 0 5 1483 25 0 0 0 chr1 117806130 117806155 -79389277 + AT_rich Low_complexity Low_complexity 1 25 0 5 1483 484 392 7 0 chr1 117806170 117806313 -79389119 + RSINE1 SINE B4 12 155 -10 5 1483 439 60 30 0 chr1 117806354 117806421 -79389011 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 5 1483 25 0 0 0 chr1 117807059 117807084 -79388348 + AT_rich Low_complexity Low_complexity 1 25 0 5 1483 180 0 0 0 chr1 117807120 117807140 -79388292 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1483 490 388 66 22 chr1 117807171 117807445 -79387987 - B4A SINE B4 -2 290 5 5 1483 1442 325 92 86 chr1 117808265 117809522 -79385910 - Lx8 LINE L1 -160 7313 6049 5 1483 478 318 34 0 chr1 117809584 117809732 -79385700 - RSINE1 SINE B4 -2 163 11 5 1483 187 31 62 0 chr1 117810206 117810238 -79385194 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 5 1483 351 0 0 0 chr1 117810247 117810286 -79385146 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1483 582 332 131 18 chr1 117812213 117812550 -79382882 - MTEb LTR MaLR -4 375 1 5 1483 450 114 0 0 chr1 117812572 117812642 -79382790 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1483 258 293 73 96 chr1 117813007 117813143 -79382289 + B4 SINE B4 6 138 -154 5 1483 24 32 0 0 chr1 117813305 117813336 -79382096 + AT_rich Low_complexity Low_complexity 1 31 0 5 1483 1149 68 7 0 chr1 117813631 117813777 -79381655 - B1_Mm SINE Alu 0 147 1 5 1483 3330 184 60 69 chr1 117813848 117814618 -79380814 + RLTR25B LTR ERVK 4 766 -262 5 1483 696 146 30 23 chr1 117814626 117814759 -79380673 + RLTR25B LTR ERVK 895 1028 0 5 1483 212 189 0 0 chr1 117815381 117815418 -79380014 + T-rich Low_complexity Low_complexity 90 126 0 5 1483 222 37 0 0 chr1 117815420 117815447 -79379985 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1483 955 117 0 0 chr1 117815447 117815584 -79379848 - B1_Mus2 SINE Alu -9 138 2 5 1483 361 333 59 7 chr1 117816106 117816242 -79379190 - RSINE1 SINE B4 -12 153 11 5 1483 415 283 52 73 chr1 117817389 117817584 -79377848 + MTEa LTR MaLR 165 366 -13 5 1483 294 321 102 42 chr1 117818182 117818348 -79377084 - B4A SINE B4 -35 257 82 5 1483 5451 129 2 1 chr1 117818356 117819188 -79376244 - L1_Mus4 LINE L1 -7 6629 5797 5 1483 526 91 30 0 chr1 117819189 117819288 -79376144 + L1Md_F3 LINE L1 6483 6584 0 5 1483 623 147 15 7 chr1 117819307 117819444 -79375988 - Lx3_Mus LINE L1 -5 7004 6867 5 1483 6015 154 16 7 chr1 117819444 117820521 -79374911 - L1_Mm LINE L1 -86 5797 4712 5 1483 180 0 0 0 chr1 117820536 117820556 -79374876 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1483 22 35 0 0 chr1 117821820 117821849 -79373583 + AT_rich Low_complexity Low_complexity 1 29 0 5 1483 1103 87 116 6 chr1 117821974 117822147 -79373285 - B2_Mm2 SINE B2 -2 193 2 5 1483 888 277 62 7 chr1 117822230 117822503 -79372929 - B4 SINE B4 -4 288 1 5 1483 304 367 33 0 chr1 117822705 117822825 -79372607 - MER5A DNA MER1_type -10 179 56 5 1483 642 13 0 0 chr1 117823924 117823999 -79371433 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1483 612 336 77 13 chr1 117824647 117824882 -79370550 + B4A SINE B4 35 284 -8 5 1483 23 33 0 0 chr1 117825764 117825794 -79369638 + AT_rich Low_complexity Low_complexity 1 30 0 5 1483 657 289 131 16 chr1 117826081 117826401 -79369031 - ORR1E LTR MaLR -2 357 1 5 1483 536 234 92 35 chr1 117826406 117826579 -79368853 + B2_Mm2 SINE B2 4 186 -9 5 1483 756 294 118 28 chr1 117826746 117827001 -79368431 - B4 SINE B4 0 292 15 5 1483 459 0 0 0 chr1 117827417 117827468 -79367964 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1483 188 318 0 0 chr1 117827961 117828005 -79367427 + MIRb SINE MIR 27 70 -198 5 1483 490 310 87 19 chr1 117828253 117828519 -79366913 + B4 SINE B4 5 288 -4 5 1483 24 0 0 0 chr1 117829107 117829131 -79366301 + AT_rich Low_complexity Low_complexity 1 24 0 5 1483 415 303 86 46 chr1 117829131 117829328 -79366104 - ID_B1 SINE B4 -19 205 1 5 1483 913 275 14 34 chr1 117830071 117830368 -79365064 + B4A SINE B4 2 292 0 5 1483 423 0 0 0 chr1 117830814 117830861 -79364571 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1483 256 307 85 34 chr1 117831094 117831212 -79364220 + MLT1C LTR MaLR 341 464 -3 5 1483 509 305 178 43 chr1 117832723 117833004 -79362428 - MTE2b LTR MaLR -4 375 57 5 1483 200 327 0 0 chr1 117833408 117833463 -79361969 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1483 468 0 0 0 chr1 117833463 117833515 -79361917 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1484 408 325 18 37 chr1 117833738 117833930 -79361502 + B4 SINE B4 6 193 -99 5 1484 7325 140 86 19 chr1 117833939 117835452 -79359980 + Lx2 LINE L1 5392 6995 -2 5 1484 261 0 0 0 chr1 117835624 117835653 -79359779 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1484 441 0 0 0 chr1 117835653 117835701 -79359731 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1484 429 20 0 0 chr1 117835925 117835975 -79359457 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 1484 603 84 0 0 chr1 117836026 117836121 -79359311 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 1484 3081 231 16 19 chr1 117836122 117836797 -79358635 - MTC-int LTR MaLR -585 673 1 5 1484 1449 198 67 45 chr1 117836807 117837018 -79358414 - MTC LTR MaLR -63 333 108 5 1484 3458 82 30 2 chr1 117837018 117837492 -79357940 + L1_Mus2 LINE L1 6080 6566 0 5 1484 1449 185 59 31 chr1 117837492 117837613 -79357819 - MTC LTR MaLR -301 120 1 5 1484 462 333 93 51 chr1 117838215 117838806 -79356626 - Lx8 LINE L1 -9 7464 6849 5 1484 486 0 0 0 chr1 117838920 117838974 -79356458 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1484 195 69 0 0 chr1 117839851 117839880 -79355552 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 1484 228 167 0 0 chr1 117840002 117840044 -79355388 - MT2A LTR ERVL 0 533 492 5 1484 237 33 0 0 chr1 117840191 117840221 -79355211 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 5 1484 484 291 26 39 chr1 117840613 117840767 -79354665 - MT2A LTR ERVL -76 457 306 5 1484 362 317 113 51 chr1 117841551 117841780 -79353652 - MT2A LTR ERVL 0 584 315 5 1484 275 315 14 0 chr1 117841911 117841984 -79353448 - MTEa LTR MaLR -264 115 42 5 1484 22 0 0 0 chr1 117842415 117842437 -79352995 + AT_rich Low_complexity Low_complexity 1 22 0 5 1484 515 292 101 7 chr1 117843146 117843284 -79352148 + B4A SINE B4 130 280 -12 5 1484 273 307 44 33 chr1 117843529 117843620 -79351812 - RMER15 LTR ERVL -113 462 371 5 1484 539 295 64 20 chr1 117843627 117843831 -79351601 - Lx8 LINE L1 -247 7226 7014 5 1484 463 312 147 49 chr1 117844128 117844394 -79351038 - B4A SINE B4 0 292 1 5 1484 599 287 119 26 chr1 117844530 117844909 -79350523 + L1MA6 LINE L1 5841 6254 -46 5 1484 651 283 55 79 chr1 117844978 117845231 -79350201 + B4A SINE B4 46 292 0 5 1484 231 314 14 108 chr1 117845306 117845445 -79349987 - Zaphod DNA Tip100 -50 3981 3856 5 1484 289 306 152 22 chr1 117845629 117845813 -79349619 - RMER15 LTR ERVL -16 559 352 5 1484 273 288 19 38 chr1 117847067 117847226 -79348206 + (TATG)n Simple_repeat Simple_repeat 2 157 0 5 1484 180 152 0 0 chr1 117847252 117847285 -79348147 + GA-rich Low_complexity Low_complexity 1 33 0 5 1484 697 364 25 18 chr1 117847341 117847618 -79347814 - B4A SINE B4 -2 290 12 5 1484 498 304 234 19 chr1 117847896 117848208 -79347224 - MTEa LTR MaLR 0 379 1 5 1484 1082 279 64 25 chr1 117849017 117849374 -79346058 - MTD LTR MaLR 0 419 49 5 1484 593 290 147 39 chr1 117849554 117849812 -79345620 + B4A SINE B4 3 288 -4 5 1484 201 361 0 16 chr1 117849852 117849976 -79345456 + (CATA)n Simple_repeat Simple_repeat 3 124 0 5 1484 204 294 81 12 chr1 117850659 117850745 -79344687 + MIR SINE MIR 86 177 -85 5 1484 1083 293 23 93 chr1 117850775 117851129 -79344303 + MTEa LTR MaLR 34 362 -17 5 1484 598 262 17 34 chr1 117851756 117851934 -79343498 - Lx5 LINE L1 0 7050 6876 5 1484 1842 229 21 18 chr1 117851902 117852289 -79343143 + Lx5 LINE L1 6487 6874 -176 5 1484 285 256 0 34 chr1 117852296 117852385 -79343047 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 5 1484 439 363 38 75 chr1 117852395 117852687 -79342745 - B4 SINE B4 -11 281 1 5 1484 229 263 18 0 chr1 117852766 117852823 -79342609 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1484 723 108 0 0 chr1 117853512 117853623 -79341809 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1484 504 318 82 43 chr1 117853670 117853926 -79341506 - B4A SINE B4 -18 274 9 5 1484 522 177 0 0 chr1 117853992 117854088 -79341344 - RMER1B Other Other -12 1054 959 5 1484 999 15 113 15 chr1 117854412 117854545 -79340887 + L1Md_F2 LINE L1 6425 6570 -12 5 1484 491 312 25 25 chr1 117854974 117855135 -79340297 + ID_B1 SINE B4 1 161 -63 5 1484 399 21 0 0 chr1 117855256 117855304 -79340128 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1484 668 317 97 0 chr1 117855446 117855705 -79339727 + B4 SINE B4 5 288 -4 5 1484 462 18 0 0 chr1 117855752 117855807 -79339625 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1484 367 324 186 24 chr1 117856607 117856854 -79338578 - RMER15 LTR ERVL -14 561 275 6 1484 237 65 0 0 chr1 117857137 117857168 -79338264 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1484 491 279 66 11 chr1 117857671 117857852 -79337580 - RMER15 LTR ERVL -87 488 298 6 1484 252 0 0 0 chr1 117858321 117858349 -79337083 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1484 277 316 38 0 chr1 117858650 117858729 -79336703 + ID4_ SINE ID 2 83 0 6 1484 35 63 0 0 chr1 117858990 117859053 -79336379 + AT_rich Low_complexity Low_complexity 1 63 0 6 1484 239 325 114 20 chr1 117860071 117860231 -79335201 - MIRm SINE MIR -92 176 3 6 1484 234 91 0 0 chr1 117860432 117860465 -79334967 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1484 3097 62 7 0 chr1 117860482 117860886 -79334546 + L1Md_F2 LINE L1 6176 6582 0 6 1484 268 330 0 76 chr1 117860967 117861072 -79334360 - B4 SINE B4 -10 282 186 6 1484 23 33 0 0 chr1 117861177 117861207 -79334225 + AT_rich Low_complexity Low_complexity 1 30 0 6 1484 271 345 28 22 chr1 117861275 117861444 -79333988 - MIRc SINE MIR -76 192 24 6 1484 1139 311 87 30 chr1 117862866 117863427 -79332005 - Lx8 LINE L1 -362 7111 6519 6 1484 1621 222 16 9 chr1 117864203 117864521 -79330911 + MTC LTR MaLR 1 320 -101 6 1484 342 184 25 38 chr1 117864511 117864590 -79330842 - RMER20B LTR ERVK -549 78 1 6 1484 8079 44 4 0 chr1 117864744 117865963 -79329469 - L1Md_F2 LINE L1 0 6582 5357 6 1484 569 325 5 20 chr1 117866081 117866279 -79329153 + B4 SINE B4 2 196 -96 6 1484 342 0 0 0 chr1 117866342 117866380 -79329052 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1484 36 77 0 0 chr1 117867018 117867096 -79328336 + AT_rich Low_complexity Low_complexity 1 78 0 6 1484 611 358 18 27 chr1 117867118 117867339 -79328093 + ID_B1 SINE B4 2 220 -4 6 1484 1138 281 50 33 chr1 117868136 117868618 -79326814 + BLACKJACK DNA AcHobo 1919 2408 -536 6 1484 2542 158 37 26 chr1 117868626 117868825 -79326607 - Lx4A LINE L1 -17 7041 6839 6 1484 1508 217 196 11 chr1 117868825 117869295 -79326137 - RLTR31B_Mm LTR ERVK 0 557 1 6 1484 2542 158 37 26 chr1 117869295 117869555 -79325877 - Lx4A LINE L1 -220 6838 6577 6 1484 24 0 0 0 chr1 117869959 117869983 -79325449 + AT_rich Low_complexity Low_complexity 1 24 0 6 1484 231 61 0 0 chr1 117870323 117870356 -79325076 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1484 421 381 66 10 chr1 117870673 117870869 -79324563 + B4A SINE B4 2 208 -84 6 1484 976 303 8 72 chr1 117871321 117871605 -79323827 - MTE2a LTR MaLR -17 362 113 6 1484 1998 186 33 0 chr1 117871605 117871946 -79323486 - ORR1C1 LTR MaLR 0 378 26 6 1484 612 0 0 0 chr1 117871946 117872014 -79323418 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1484 1998 186 33 0 chr1 117872014 117872038 -79323394 - ORR1C1 LTR MaLR -353 25 2 6 1484 976 269 8 40 chr1 117872038 117872153 -79323279 - MTE2a LTR MaLR -267 112 1 6 1484 392 51 17 0 chr1 117872609 117872668 -79322764 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 6 1484 210 321 12 0 chr1 117872670 117872754 -79322678 + CT-rich Low_complexity Low_complexity 1 85 0 6 1484 762 299 52 0 chr1 117872988 117873199 -79322233 - B4 SINE B4 -70 222 1 6 1484 594 93 0 0 chr1 117874035 117874121 -79321311 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 1484 516 16 0 0 chr1 117875082 117875143 -79320289 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1484 899 257 75 21 chr1 117875562 117875844 -79319588 - MTEb LTR MaLR 0 379 83 6 1484 622 278 28 22 chr1 117876376 117876556 -79318876 - MTD LTR MaLR -134 285 105 6 1484 2741 96 2 20 chr1 117876781 117877183 -79318249 + MTA_Mm LTR MaLR 2 396 0 6 1484 1123 290 65 26 chr1 117877686 117878026 -79317406 - MTE2b LTR MaLR -8 371 19 6 1484 216 310 0 0 chr1 117878832 117878903 -79316529 + GA-rich Low_complexity Low_complexity 1 71 0 6 1484 618 312 19 6 chr1 117879168 117879329 -79316103 + RSINE1 SINE B4 3 165 0 6 1484 462 36 0 0 chr1 117880098 117880154 -79315278 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1484 183 80 0 0 chr1 117880154 117880178 -79315254 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1484 530 326 85 6 chr1 117880257 117880429 -79315003 - B4A SINE B4 -2 290 105 6 1484 711 273 156 13 chr1 117880429 117880626 -79314806 - RMER20B LTR ERVK 0 516 295 6 1484 207 0 0 0 chr1 117880626 117880649 -79314783 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1484 711 244 172 0 chr1 117880649 117880776 -79314656 - RMER20B LTR ERVK -333 294 148 6 1484 702 187 16 16 chr1 117880948 117881073 -79314359 - RMER20B LTR ERVK -502 125 1 6 1484 357 260 70 0 chr1 117881534 117881634 -79313798 + MLT1B LTR MaLR 284 390 0 6 1484 222 37 0 0 chr1 117881651 117881678 -79313754 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 6 1484 851 338 34 0 chr1 117881684 117881950 -79313482 + B4A SINE B4 11 285 -7 6 1484 296 326 84 7 chr1 117883447 117883589 -79311843 + RMER15 LTR ERVL 410 562 -13 6 1484 285 258 0 29 chr1 117884124 117884192 -79311240 - MTE2b LTR MaLR -311 68 3 6 1484 191 403 57 0 chr1 117884369 117884493 -79310939 + L2b LINE L2 3048 3178 -197 6 1484 897 300 51 75 chr1 117885020 117885434 -79309998 + MTD LTR MaLR 1 404 -15 6 1484 751 256 212 3 chr1 117885574 117885880 -79309552 - ORR1D2 LTR MaLR 0 370 1 6 1484 204 40 0 0 chr1 117886376 117886401 -79309031 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1484 393 39 0 0 chr1 117887829 117887880 -79307552 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1484 573 42 0 0 chr1 117887880 117887951 -79307481 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1484 317 278 42 42 chr1 117888902 117889022 -79306410 + RLTR23 LTR ERV1 311 430 0 6 1484 306 134 0 0 chr1 117889762 117889829 -79305603 + (A)n Simple_repeat Simple_repeat 1 67 0 6 1484 362 123 0 30 chr1 117889857 117889924 -79305508 + CT-rich Low_complexity Low_complexity 2 66 0 6 1484 216 376 48 38 chr1 117889959 117890064 -79305368 - RSINE1 SINE B4 -59 106 1 6 1484 372 306 29 43 chr1 117890064 117890204 -79305228 - B4A SINE B4 -64 228 91 6 1484 723 308 50 5 chr1 117890586 117890785 -79304647 + ID_B1 SINE B4 3 210 -14 6 1484 704 290 14 0 chr1 117891207 117891414 -79304018 + B3 SINE B2 1 210 -6 6 1484 384 40 0 0 chr1 117891489 117891539 -79303893 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1484 220 350 0 0 chr1 117891546 117891606 -79303826 + PB1 SINE Alu 66 125 -2 6 1484 525 310 89 65 chr1 117891636 117891884 -79303548 + B4A SINE B4 28 281 -11 6 1484 312 148 0 0 chr1 117891908 117891969 -79303463 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1484 573 355 11 5 chr1 117893040 117893227 -79302205 - B3A SINE B2 0 198 11 6 1484 230 261 104 83 chr1 117893326 117893415 -79302017 + MARNA DNA Mariner 299 389 -197 6 1484 242 301 72 0 chr1 117893415 117893498 -79301934 + B4 SINE B4 4 92 -200 6 1484 4921 177 20 39 chr1 117893498 117894351 -79301081 + Lx4B LINE L1 4808 5661 -216 6 1484 4265 34 12 0 chr1 117894351 117894858 -79300574 - L1Md_A LINE L1 0 6582 6070 6 1484 4921 196 41 34 chr1 117894858 117896140 -79299292 + Lx4B LINE L1 5662 6985 -15 6 1484 663 103 0 0 chr1 117896152 117896249 -79299183 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 1484 366 150 6 41 chr1 117896261 117896334 -79299098 + B4 SINE B4 141 216 -76 6 1484 223 241 31 144 chr1 117896273 117896336 -79299096 + B1_Mur4 SINE Alu 64 118 -32 6 1484 551 92 11 0 chr1 117896336 117896423 -79299009 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 6 1484 223 241 31 144 chr1 117896423 117896456 -79298976 + B1_Mur4 SINE Alu 119 149 -1 6 1484 381 93 0 0 chr1 117896461 117896515 -79298917 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1484 582 15 0 0 chr1 117896515 117896582 -79298850 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 6 1484 729 85 0 0 chr1 117896595 117896701 -79298731 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 6 1484 271 299 15 0 chr1 117896712 117896779 -79298653 + B4 SINE B4 217 284 -8 6 1484 305 339 101 0 chr1 117897246 117897355 -79298077 - PB1 SINE Alu -7 120 1 6 1484 210 37 0 0 chr1 117897394 117897421 -79298011 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1484 603 74 0 0 chr1 117897889 117897970 -79297462 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1484 375 186 0 0 chr1 117897978 117898075 -79297357 + (CAGAGA)n Simple_repeat Simple_repeat 2 98 0 6 1484 231 333 0 0 chr1 117898091 117898151 -79297281 - RSINE1 SINE B4 -24 141 82 6 1484 350 264 44 26 chr1 117898190 117898303 -79297129 + MTD LTR MaLR 19 133 -286 6 1484 311 358 32 26 chr1 117898339 117898494 -79296938 + B4A SINE B4 134 289 -3 6 1484 550 26 26 0 chr1 117898514 117898590 -79296842 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 6 1484 182 333 31 41 chr1 117898872 117898969 -79296463 + MIR3 SINE MIR 67 162 -46 6 1484 351 302 50 119 chr1 117899790 117900101 -79295331 - RMER15 LTR ERVL -155 420 1 6 1484 901 316 36 33 chr1 117900610 117900914 -79294518 - MTEa LTR MaLR -74 305 1 6 1484 329 138 136 11 chr1 117901774 117901862 -79293570 - HAL1-3A_ME LINE L1 -786 2072 1974 6 1484 1505 38 0 0 chr1 117902571 117902756 -79292676 + L1Md_F2 LINE L1 6388 6572 -10 6 1484 1983 164 144 15 chr1 117902826 117903222 -79292210 - RLTR44B LTR ERVK -2 447 1 6 1484 267 54 0 0 chr1 117903267 117903304 -79292128 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1484 964 297 101 22 chr1 117903720 117904037 -79291395 + MTE2b LTR MaLR 2 343 -36 6 1484 30 0 0 0 chr1 117905180 117905210 -79290222 + AT_rich Low_complexity Low_complexity 1 30 0 6 1484 1798 307 56 48 chr1 117905287 117906300 -79289132 - Lx9 LINE L1 -89 7555 6535 6 1484 734 363 39 11 chr1 117907304 117907585 -79287847 + B4 SINE B4 1 289 -3 6 1484 189 237 0 0 chr1 117907590 117907649 -79287783 + CT-rich Low_complexity Low_complexity 1 59 0 6 1484 22 0 0 0 chr1 117907692 117907714 -79287718 + AT_rich Low_complexity Low_complexity 1 22 0 6 1484 2353 247 79 21 chr1 117908145 117908869 -79286563 + Lx9 LINE L1 6803 7568 -76 7 1484 1125 23 0 0 chr1 117909292 117909424 -79286008 + (TG)n Simple_repeat Simple_repeat 2 133 0 7 1484 591 298 170 8 chr1 117909585 117909832 -79285600 - B4 SINE B4 -1 291 5 7 1484 2376 246 34 52 chr1 117910455 117910723 -79284709 - Lx9 LINE L1 -285 7359 7102 7 1484 525 58 0 0 chr1 117910723 117910792 -79284640 + (GGGA)n Simple_repeat Simple_repeat 1 69 0 7 1484 2376 234 167 42 chr1 117910792 117911396 -79284036 - Lx9 LINE L1 -543 7101 6416 7 1484 431 306 173 39 chr1 117912043 117912349 -79283083 + ORR1E LTR MaLR 3 349 -10 7 1484 1061 243 84 17 chr1 117912366 117912663 -79282769 - MT2A LTR ERVL 0 533 217 7 1484 283 344 60 64 chr1 117912752 117913106 -79282326 + L2b LINE L2 2931 3278 -109 7 1484 3923 113 71 10 chr1 117913553 117914162 -79281270 - Lx3_Mus LINE L1 -8 7001 6356 7 1484 181 360 15 60 chr1 117914178 117914311 -79281121 + L3 LINE CR1 3390 3516 -973 7 1484 453 19 0 0 chr1 117914485 117914539 -79280893 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1484 375 41 0 0 chr1 117914556 117914605 -79280827 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1484 333 0 0 0 chr1 117914605 117914641 -79280791 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 7 1484 1013 307 102 18 chr1 117914792 117915182 -79280250 + MTD LTR MaLR 1 421 0 7 1484 234 0 0 0 chr1 117915446 117915472 -79279960 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1484 32252 72 13 4 chr1 117915641 117921795 -79273637 - L1Md_F2 LINE L1 0 6582 371 7 1484 262 303 13 0 chr1 117922232 117922308 -79273124 + (TATG)n Simple_repeat Simple_repeat 3 79 0 7 1484 967 277 57 57 chr1 117922421 117922704 -79272728 + B4 SINE B4 8 290 -2 7 1484 265 244 34 23 chr1 117922893 117922981 -79272451 + GA-rich Low_complexity Low_complexity 4 92 0 7 1484 350 259 22 11 chr1 117923784 117923874 -79271558 + B4 SINE B4 2 92 -200 7 1484 558 321 25 45 chr1 117923891 117924093 -79271339 + B3A SINE B2 1 198 0 7 1484 367 319 50 16 chr1 117924098 117924219 -79271213 + B4 SINE B4 77 201 -91 7 1484 217 270 16 0 chr1 117924219 117924282 -79271150 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 7 1484 386 331 16 31 chr1 117924486 117924614 -79270818 - B1_Mur1 SINE Alu -23 126 1 7 1484 505 313 44 37 chr1 117924631 117924812 -79270620 - B3A SINE B2 0 216 25 7 1484 1047 64 43 0 chr1 117924941 117925081 -79270351 + B1_Mus2 SINE Alu 2 147 0 7 1484 204 40 0 0 chr1 117925082 117925107 -79270325 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1484 420 20 0 0 chr1 117925128 117925177 -79270255 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1484 1097 270 65 7 chr1 117925178 117925454 -79269978 - MTEb LTR MaLR -82 297 6 7 1484 869 297 74 113 chr1 117926705 117927085 -79268347 + MTE2a LTR MaLR 1 365 -14 7 1484 291 113 0 0 chr1 117927718 117927771 -79267661 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1484 360 270 0 20 chr1 117928839 117928941 -79266491 - MLT1A1 LTR MaLR -9 399 300 7 1484 745 332 15 0 chr1 117929692 117929891 -79265541 - ID_B1 SINE B4 -5 219 18 7 1484 227 257 105 79 chr1 117929790 117929904 -79265528 - RLTR6_Mm LTR ERV1 -208 446 330 7 1484 333 162 0 0 chr1 117930233 117930301 -79265131 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1484 436 351 135 0 chr1 117930326 117930511 -79264921 - B4 SINE B4 -80 212 3 7 1484 303 96 0 0 chr1 117931457 117931509 -79263923 + (A)n Simple_repeat Simple_repeat 1 52 0 7 1484 867 281 20 53 chr1 117931556 117931904 -79263528 + MTE2a LTR MaLR 95 419 0 7 1484 213 211 0 0 chr1 117934047 117934099 -79261333 + (TATG)n Simple_repeat Simple_repeat 3 54 0 7 1484 821 215 112 6 chr1 117934276 117934475 -79260957 + MTD LTR MaLR 170 405 -14 7 1484 658 292 29 0 chr1 117934485 117934656 -79260776 + B4A SINE B4 104 279 -13 7 1484 504 72 0 0 chr1 117934657 117934726 -79260706 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1484 291 54 0 0 chr1 117934763 117934800 -79260632 + (CAA)n Simple_repeat Simple_repeat 2 38 0 7 1484 787 289 61 5 chr1 117935703 117935901 -79259531 - ID_B1 SINE B4 -10 214 6 7 1484 446 303 89 19 chr1 117936057 117936215 -79259217 - MLT1A LTR MaLR -33 341 173 7 1484 1249 146 42 262 chr1 117936760 117937282 -79258150 - RMER17C LTR ERVK -3 407 1 7 1484 2195 136 155 24 chr1 117937282 117937868 -79257564 - RMER17C-int LTR ERVK 0 3238 2576 7 1484 1014 134 20 30 chr1 117937877 117938077 -79257355 - RMER17C-int LTR ERVK -871 2367 2170 7 1484 616 187 214 28 chr1 117938076 117938156 -79257276 - RMER17C-int LTR ERVK -1222 2016 1938 7 1484 207 0 0 0 chr1 117938156 117938179 -79257253 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1484 616 187 214 28 chr1 117938179 117938313 -79257119 - RMER17C-int LTR ERVK -1301 1937 1762 7 1484 778 183 64 23 chr1 117938322 117938540 -79256892 - RMER17C LTR ERVK -549 409 183 7 1484 1188 50 0 0 chr1 117939251 117939392 -79256040 + B1_Mm SINE Alu 1 141 -6 7 1484 198 208 0 0 chr1 117939436 117939484 -79255948 + CT-rich Low_complexity Low_complexity 1 48 0 7 1484 331 262 46 66 chr1 117939564 117939715 -79255717 - RLTR14 LTR ERV1 0 382 235 7 1484 601 290 102 5 chr1 117940003 117940190 -79255242 - B4A SINE B4 -85 207 3 7 1484 195 42 0 0 chr1 117940657 117940681 -79254751 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1484 264 321 8 102 chr1 117941268 117941386 -79254046 + PB1D10 SINE Alu 11 117 0 7 1484 264 30 0 0 chr1 117941777 117941810 -79253622 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1484 1167 75 0 0 chr1 117941822 117941969 -79253463 - B1_Mus1 SINE Alu 0 148 2 7 1484 581 304 34 115 chr1 117942854 117943177 -79252255 - RLTR26 LTR ERVK -187 455 159 7 1484 806 266 98 44 chr1 117943313 117943542 -79251890 + ORR1E LTR MaLR 49 283 -76 7 1484 183 42 0 0 chr1 117943542 117943566 -79251866 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1484 806 266 98 44 chr1 117943566 117943631 -79251801 + ORR1E LTR MaLR 284 358 -1 7 1484 31891 101 13 15 chr1 117943918 117950294 -79245138 - L1Md_F2 LINE L1 0 6582 238 7 1484 344 329 58 26 chr1 117950487 117950643 -79244789 - RSINE1 SINE B4 -2 163 3 7 1484 558 357 32 26 chr1 117950661 117950851 -79244581 - B4A SINE B4 -101 191 1 7 1484 2310 42 0 14 chr1 117951000 117951290 -79244142 + L1Md_F3 LINE L1 6297 6582 -2 7 1484 1399 64 11 5 chr1 117951300 117951488 -79243944 + B2_Mm2 SINE B2 1 189 -6 7 1484 417 129 32 0 chr1 117952423 117952485 -79242947 - RMER15 LTR ERVL 0 575 512 7 1484 2305 192 62 4 chr1 117952499 117952981 -79242451 - RLTR28 LTR ERVL -14 510 1 7 1484 2606 194 12 26 chr1 117952981 117953482 -79241950 - RMER15 LTR ERVL -60 515 22 7 1484 1526 233 157 68 chr1 117954021 117954582 -79240850 - RMER19C LTR ERVK 0 611 1 7 1484 279 185 23 58 chr1 117954726 117954812 -79240620 + (TCTCTG)n Simple_repeat Simple_repeat 3 85 0 7 1484 246 32 0 0 chr1 117954812 117954843 -79240589 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1484 369 0 0 0 chr1 117955265 117955306 -79240126 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1484 2116 236 22 26 chr1 117955308 117955929 -79239503 - Lx9 LINE L1 -186 7458 6840 7 1484 183 129 0 0 chr1 117956573 117956604 -79238828 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 7 1484 733 329 18 9 chr1 117957005 117957223 -79238209 - B4 SINE B4 -70 222 3 7 1484 22 0 0 0 chr1 117957249 117957271 -79238161 + AT_rich Low_complexity Low_complexity 1 22 0 7 1484 1133 203 18 0 chr1 117957680 117957897 -79237535 - URR1A DNA MER1_type -1 225 5 7 1484 3180 50 17 0 chr1 117958099 117958519 -79236913 - L1Md_F2 LINE L1 -564 6018 5592 7 1484 4457 76 0 10 chr1 117958519 117959115 -79236317 + L1Md_F2 LINE L1 5989 6578 -4 7 1484 782 323 42 83 chr1 117959121 117959506 -79235926 - MTE2a LTR MaLR 0 379 11 7 1484 436 152 11 0 chr1 117959810 117959902 -79235530 - L1_Mus4 LINE L1 -24 6612 6520 7 1484 3881 100 2 0 chr1 117959925 117960541 -79234891 - L1_Mus3 LINE L1 -492 6146 5530 7 1484 4760 138 26 80 chr1 117960537 117962006 -79233426 - L1VL4 LINE L1 -1880 1679 110 7 1484 678 122 0 0 chr1 117962294 117962401 -79233031 + (TG)n Simple_repeat Simple_repeat 2 108 0 7 1484 519 275 8 32 chr1 117962408 117962532 -79232900 - RSINE1 SINE B4 -44 121 1 7 1484 685 338 26 7 chr1 117962782 117963053 -79232379 - B4 SINE B4 -14 278 3 7 1484 261 318 109 105 chr1 117963384 117963519 -79231913 + MLT2C1 LTR ERVL 3 113 -284 7 1484 556 271 187 6 chr1 117963519 117963701 -79231731 - B3 SINE B2 0 216 2 7 1484 261 287 70 81 chr1 117963701 117963870 -79231562 + MLT2C1 LTR ERVL 114 302 -162 7 1484 458 302 122 47 chr1 117964052 117964306 -79231126 + B4A SINE B4 1 273 -19 7 1484 435 240 10 0 chr1 117964526 117964626 -79230806 - Lx8 LINE L1 -419 7054 6954 7 1484 24 53 0 0 chr1 117964733 117964771 -79230661 + AT_rich Low_complexity Low_complexity 1 38 0 7 1485 205 311 0 0 chr1 117965323 117965384 -79230048 + CT-rich Low_complexity Low_complexity 2 62 0 7 1485 25 31 0 0 chr1 117965811 117965843 -79229589 + AT_rich Low_complexity Low_complexity 1 32 0 7 1485 462 304 35 29 chr1 117965908 117965985 -79229447 + ID SINE ID 5 82 -142 7 1485 288 328 78 8 chr1 117965985 117966114 -79229318 + B1F SINE Alu 1 138 -11 7 1485 219 203 34 0 chr1 117966167 117966226 -79229206 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 7 1485 270 212 50 20 chr1 117966376 117966477 -79228955 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 7 1485 782 235 43 29 chr1 117966989 117967199 -79228233 + ID_B1 SINE B4 9 221 -3 7 1485 612 328 18 0 chr1 117967538 117967709 -79227723 - B4 SINE B4 -118 174 1 7 1485 685 297 28 56 chr1 117968927 117969212 -79226220 + B4 SINE B4 3 279 -13 7 1485 277 301 0 0 chr1 117969248 117969321 -79226111 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1485 369 0 0 0 chr1 117969732 117969773 -79225659 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1485 414 0 0 0 chr1 117969773 117969818 -79225614 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1485 450 0 0 0 chr1 117969845 117969895 -79225537 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 7 1485 276 374 36 44 chr1 117969911 117970048 -79225384 - B4A SINE B4 -84 208 73 7 1485 189 74 0 0 chr1 117970065 117970092 -79225340 + (TAGTG)n Simple_repeat Simple_repeat 2 28 0 8 1485 312 319 53 80 chr1 117970148 117970298 -79225134 - B4A SINE B4 -146 146 1 8 1485 289 330 0 20 chr1 117970298 117970392 -79225040 - B4A SINE B4 -199 93 2 7 1485 285 313 46 79 chr1 117970999 117971180 -79224252 + B4 SINE B4 10 190 -102 8 1485 365 295 135 8 chr1 117971265 117971398 -79224034 + HAL1-3A_ME LINE L1 1975 2124 -734 8 1485 186 103 0 0 chr1 117971398 117971427 -79224005 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 8 1485 517 309 97 0 chr1 117971609 117971784 -79223648 + ID_B1 SINE B4 32 223 -1 8 1485 236 149 0 21 chr1 117971802 117971850 -79223582 + GA-rich Low_complexity Low_complexity 4 50 0 8 1485 232 293 0 0 chr1 117971856 117971914 -79223518 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 8 1485 207 0 0 0 chr1 117973291 117973314 -79222118 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1485 348 357 32 32 chr1 117974027 117974305 -79221127 + B4A SINE B4 1 278 -14 8 1485 306 0 0 0 chr1 117974347 117974381 -79221051 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1485 279 104 0 0 chr1 117974779 117974827 -79220605 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1485 238 106 43 0 chr1 117974983 117975030 -79220402 + (TTCTC)n Simple_repeat Simple_repeat 2 50 0 8 1485 4836 265 60 31 chr1 117975030 117975233 -79220199 - Lx6 LINE L1 0 7460 7266 8 1485 5067 69 0 5 chr1 117975233 117975899 -79219533 + L1_Mus1 LINE L1 5904 6566 -1 8 1485 4836 265 60 31 chr1 117975899 117977220 -79218212 - Lx6 LINE L1 -195 7265 5892 8 1485 379 339 56 73 chr1 117977617 117977795 -79217637 + B4A SINE B4 6 180 -112 8 1485 246 343 43 0 chr1 117977841 117977911 -79217521 + RSINE1 SINE B4 80 152 -13 8 1485 372 97 0 0 chr1 117977921 117977983 -79217449 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1485 360 0 0 0 chr1 117977983 117978022 -79217410 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1485 1000 203 65 14 chr1 117978713 117978928 -79216504 - URR1A DNA MER1_type 0 226 1 8 1485 197 104 0 59 chr1 117978989 117979040 -79216392 + T-rich Low_complexity Low_complexity 1 48 0 8 1485 180 0 0 0 chr1 117979341 117979361 -79216071 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 1485 857 100 48 41 chr1 117979372 117979518 -79215914 - B1_Mus2 SINE Alu 0 147 1 8 1485 319 288 121 18 chr1 117979881 117980047 -79215385 - B3A SINE B2 -13 185 3 8 1485 505 323 63 29 chr1 117980058 117980265 -79215167 - B4A SINE B4 -74 218 5 8 1485 561 298 95 5 chr1 117981014 117981203 -79214229 + B4A SINE B4 1 206 -86 8 1485 699 342 52 12 chr1 117981206 117981458 -79213974 + ID_B1 SINE B4 2 278 -14 8 1485 342 45 0 0 chr1 117981489 117981533 -79213899 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1485 313 317 55 0 chr1 117981663 117981808 -79213624 + L1MA6 LINE L1 5857 6009 -291 8 1485 426 273 80 89 chr1 117981907 117982120 -79213312 - RMER15 LTR ERVL -2 573 363 8 1485 975 70 78 0 chr1 117982578 117982707 -79212725 + B1_Mus1 SINE Alu 1 139 -9 8 1485 216 0 0 0 chr1 117982707 117982731 -79212701 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1485 192 77 0 0 chr1 117982848 117982874 -79212558 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1485 7225 70 10 1 chr1 117982986 117984391 -79211041 + L1_Mus1 LINE L1 5163 6567 0 8 1485 365 324 31 101 chr1 117984923 117985150 -79210282 - RLTR23 LTR ERV1 0 430 220 8 1485 690 313 34 64 chr1 117986007 117986273 -79209159 - B4A SINE B4 0 292 35 8 1485 523 358 31 15 chr1 117986616 117986812 -79208620 - B4A SINE B4 -2 290 92 8 1485 873 197 98 39 chr1 117986838 117987144 -79208288 - RMER17C LTR ERVK -3 407 84 8 1485 834 187 20 47 chr1 117987125 117987378 -79208054 - RMER17C LTR ERVK -164 246 1 8 1485 426 110 77 0 chr1 117987912 117988003 -79207429 - L1_Mus3 LINE L1 -1 6637 6540 8 1485 360 333 7 59 chr1 117988423 117988576 -79206856 - RSINE1 SINE B4 -19 146 2 8 1485 725 278 41 51 chr1 117988954 117989246 -79206186 + B4 SINE B4 4 292 0 8 1485 484 208 0 20 chr1 117990023 117990121 -79205311 - ID_B1 SINE B4 0 224 129 8 1485 1501 205 55 121 chr1 117990121 117990463 -79204969 - RLTR41 LTR ERV1 0 446 129 8 1485 2897 46 73 5 chr1 117990463 117990834 -79204598 + MTA_Mm LTR MaLR 1 396 0 8 1485 1501 123 33 55 chr1 117990834 117991007 -79204425 - RLTR41 LTR ERV1 -276 170 1 8 1485 287 341 98 0 chr1 117991016 117991139 -79204293 - B4 SINE B4 -157 135 1 8 1485 999 255 85 18 chr1 117991459 117991742 -79203690 - MTEa LTR MaLR -1 378 77 8 1485 3055 84 2 0 chr1 117992642 117993048 -79202384 + L1_Mus1 LINE L1 6161 6567 0 8 1485 484 321 37 0 chr1 117993080 117993214 -79202218 + B3A SINE B2 27 165 -33 8 1485 288 0 0 0 chr1 117993214 117993246 -79202186 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 8 1485 405 341 51 83 chr1 117993308 117993561 -79201871 + B4 SINE B4 3 247 -45 8 1485 352 272 125 72 chr1 117993548 117993749 -79201683 + B3A SINE B2 5 203 -13 8 1485 790 284 40 15 chr1 117993811 117994011 -79201421 + B3 SINE B2 6 210 -6 8 1485 344 276 0 28 chr1 117994612 117994720 -79200712 + RSINE1 SINE B4 4 108 -57 8 1485 21 0 0 0 chr1 117995176 117995197 -79200235 + AT_rich Low_complexity Low_complexity 1 21 0 8 1485 606 332 27 41 chr1 117995741 117996036 -79199396 - B4A SINE B4 0 292 2 8 1485 462 350 83 80 chr1 117996274 117996563 -79198869 + B4A SINE B4 2 291 -1 8 1485 210 128 0 0 chr1 117997269 117997308 -79198124 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1485 264 284 15 0 chr1 117997338 117997405 -79198027 - RSINE1 SINE B4 -85 80 13 8 1485 222 118 59 0 chr1 117997604 117997655 -79197777 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 8 1485 237 83 0 0 chr1 117997745 117997781 -79197651 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1485 537 270 58 116 chr1 117998539 117998937 -79196495 - MTE2a LTR MaLR 0 379 5 8 1485 210 91 0 0 chr1 117998978 117999011 -79196421 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1485 327 345 0 0 chr1 117999139 117999223 -79196209 + RSINE1 SINE B4 3 86 -79 8 1485 1866 121 39 0 chr1 117999342 117999624 -79195808 - ORR1A2 LTR MaLR 0 327 35 8 1485 967 279 8 25 chr1 117999636 117999875 -79195557 - MTD LTR MaLR -180 239 5 8 1485 407 279 54 0 chr1 117999888 117999999 -79195433 + MTE2b LTR MaLR 91 207 -172 8 1485 678 241 53 41 chr1 118000000 118000169 -79195263 + MTE2b LTR MaLR 205 375 -4 1 1485 2764 140 9 24 chr1 118000583 118001037 -79194395 + Lx2 LINE L1 6247 6693 -304 2 1485 361 261 70 56 chr1 118001050 118001192 -79194240 - RMER12 LTR ERVK -78 1244 1101 3 1485 5526 96 9 17 chr1 118001407 118001511 -79193921 - RLTR22_Mus LTR ERVK -997 811 714 4 1485 6501 49 75 1 chr1 118001511 118002365 -79193067 + L1Md_F3 LINE L1 5654 6570 -14 5 1485 5526 96 9 17 chr1 118002365 118003076 -79192356 - RLTR22_Mus LTR ERVK -1095 713 3 4 1485 388 308 42 8 chr1 118003168 118003286 -79192146 + B4A SINE B4 109 230 -62 6 1485 198 0 0 0 chr1 118003292 118003314 -79192118 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 7 1485 338 348 85 0 chr1 118003340 118003458 -79191974 + RSINE1 SINE B4 16 143 -22 8 1485 213 65 0 0 chr1 118003640 118003671 -79191761 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1485 1625 167 11 7 chr1 118003671 118003954 -79191478 - Lx4A LINE L1 -13 7045 6762 1 1485 502 234 65 14 chr1 118004442 118004581 -79190851 - MER115 DNA Tip100 -3 690 545 1 1485 261 0 0 0 chr1 118005799 118005828 -79189604 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1485 378 0 0 0 chr1 118005923 118005965 -79189467 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1485 238 324 0 0 chr1 118006081 118006149 -79189283 + B4 SINE B4 7 74 -218 1 1485 1120 235 144 22 chr1 118006151 118006512 -79188920 - MTD LTR MaLR 0 419 15 1 1485 401 369 7 0 chr1 118006796 118006945 -79188487 - RSINE1 SINE B4 -13 152 3 1 1485 758 347 29 14 chr1 118007691 118007969 -79187463 + B4A SINE B4 1 282 -10 1 1485 279 79 0 0 chr1 118008016 118008054 -79187378 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1485 339 25 0 0 chr1 118008054 118008093 -79187339 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1485 297 311 10 10 chr1 118008458 118008562 -79186870 - RMER5 LTR ERV1 -23 511 408 2 1485 1596 178 22 72 chr1 118008613 118009030 -79186402 + RMER17C LTR ERVK 1 396 -14 2 1485 206 103 0 49 chr1 118009783 118009824 -79185608 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1485 594 303 198 12 chr1 118010020 118010354 -79185078 - MTD LTR MaLR -15 404 9 2 1485 964 300 111 3 chr1 118010892 118011190 -79184242 - MTEa LTR MaLR -39 340 11 2 1485 312 75 19 0 chr1 118011681 118011734 -79183698 + Lx2 LINE L1 6943 6996 -1 2 1485 236 349 28 10 chr1 118012662 118012855 -79182577 + GA-rich Low_complexity Low_complexity 1 196 0 2 1485 495 0 0 0 chr1 118013120 118013175 -79182257 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1485 180 77 0 0 chr1 118013175 118013200 -79182232 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1485 221 273 0 0 chr1 118013204 118013248 -79182184 - RSINE1 SINE B4 -22 143 100 2 1485 279 0 0 0 chr1 118013424 118013455 -79181977 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1485 383 244 85 0 chr1 118014399 118014481 -79180951 + ID_B1 SINE B4 4 92 -132 3 1485 974 350 18 3 chr1 118014493 118014820 -79180612 - ORR1E LTR MaLR -26 333 2 3 1485 482 296 76 17 chr1 118014820 118014957 -79180475 + ID_B1 SINE B4 75 221 -3 3 1485 405 0 0 0 chr1 118015440 118015485 -79179947 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1485 302 318 90 26 chr1 118015512 118015667 -79179765 - Lx9 LINE L1 -214 7430 7266 3 1485 198 0 0 0 chr1 118015747 118015769 -79179663 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1485 332 242 11 11 chr1 118015903 118015995 -79179437 - L1MDa LINE L1 -3744 2793 2702 3 1485 519 252 81 7 chr1 118016009 118016145 -79179287 - B1_Mus1 SINE Alu -1 147 2 3 1485 451 279 113 20 chr1 118016158 118016683 -79178749 - L1MDa LINE L1 -3917 2701 2123 3 1485 23 0 0 0 chr1 118016689 118016712 -79178720 + AT_rich Low_complexity Low_complexity 1 23 0 3 1485 30 83 0 0 chr1 118017109 118017181 -79178251 + AT_rich Low_complexity Low_complexity 1 72 0 4 1485 414 0 0 0 chr1 118017337 118017383 -79178049 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1485 450 0 0 0 chr1 118017702 118017752 -79177680 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1485 483 317 13 46 chr1 118017800 118017952 -79177480 - B3A SINE B2 -46 152 6 4 1485 2766 117 22 56 chr1 118018154 118018653 -79176779 - RLTR45 LTR ERVK 0 482 1 4 1485 404 53 17 17 chr1 118018686 118018744 -79176688 - HAL1-3A_ME LINE L1 -825 2033 1976 4 1485 347 316 69 12 chr1 118019238 118019411 -79176021 + RLTR16 LTR ERVK 46 228 -277 4 1485 754 278 162 8 chr1 118019472 118019737 -79175695 + ORR1E LTR MaLR 4 309 -50 4 1485 846 257 24 10 chr1 118020391 118020599 -79174833 + ORR1D1 LTR MaLR 3 213 -161 4 1485 441 0 0 0 chr1 118021049 118021098 -79174334 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1485 774 187 0 0 chr1 118021364 118021519 -79173913 + T-rich Low_complexity Low_complexity 1 155 0 5 1485 1058 82 7 0 chr1 118021519 118021665 -79173767 - B1_Mm SINE Alu 0 147 1 5 1485 204 239 114 74 chr1 118022386 118022535 -79172897 - MIRb SINE MIR -91 177 23 5 1485 23 0 0 0 chr1 118023046 118023069 -79172363 + AT_rich Low_complexity Low_complexity 1 23 0 5 1485 506 312 99 50 chr1 118023195 118023377 -79172055 + B4 SINE B4 67 257 -35 5 1485 3448 71 15 6 chr1 118024037 118024508 -79170924 + MT2C_Mm LTR ERVL 1 475 0 5 1485 450 0 0 0 chr1 118024853 118024903 -79170529 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 5 1485 351 0 0 0 chr1 118024986 118025025 -79170407 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1485 279 71 0 0 chr1 118025025 118025067 -79170365 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1485 422 258 23 13 chr1 118025522 118025676 -79169756 - MLT1A0 LTR MaLR -5 462 252 5 1485 192 315 133 18 chr1 118027806 118027919 -79167513 - L2c LINE L2 -257 3130 3005 6 1485 290 267 13 51 chr1 118027967 118028046 -79167386 + RSINE1 SINE B4 68 143 -22 6 1485 456 19 0 0 chr1 118028406 118028459 -79166973 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1485 449 390 76 10 chr1 118028621 118028818 -79166614 + B4 SINE B4 83 292 0 6 1485 378 61 0 0 chr1 118028862 118028911 -79166521 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1485 361 345 22 82 chr1 118030030 118030213 -79165219 + B4A SINE B4 1 172 -120 6 1485 244 308 13 0 chr1 118030295 118030373 -79165059 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 6 1485 500 0 17 0 chr1 118030373 118030433 -79164999 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1485 342 0 0 0 chr1 118030433 118030470 -79164962 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1485 23610 119 21 10 chr1 118031117 118032486 -79162946 - L1_Mus4 LINE L1 -4 6632 5255 6 1485 486 0 0 0 chr1 118032486 118032540 -79162892 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 1485 258 32 0 0 chr1 118032547 118032578 -79162854 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1485 23610 165 42 6 chr1 118032578 118037461 -79157971 - L1_Mus4 LINE L1 -632 5254 356 6 1485 234 200 0 0 chr1 118037652 118037702 -79157730 - B3 SINE B2 -5 211 162 7 1485 21 36 0 0 chr1 118037766 118037794 -79157638 + AT_rich Low_complexity Low_complexity 1 28 0 7 1485 961 111 12 6 chr1 118037832 118037995 -79157437 - L1_Mus3 LINE L1 -1 6637 6474 7 1485 626 300 98 4 chr1 118038150 118038404 -79157028 - B4A SINE B4 -10 282 5 7 1485 306 292 14 0 chr1 118038786 118038858 -79156574 - ID4_ SINE ID -9 74 2 7 1485 805 305 29 8 chr1 118039331 118039569 -79155863 + B4A SINE B4 6 248 -44 7 1485 274 378 107 30 chr1 118039557 118039688 -79155744 + RSINE1 SINE B4 5 145 -20 7 1485 423 56 0 0 chr1 118039688 118039742 -79155690 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1485 534 229 61 141 chr1 118040904 118040927 -79154505 + B3A SINE B2 3 26 -172 8 1485 5575 32 1 0 chr1 118040927 118041617 -79153815 + L1Md_F2 LINE L1 5911 6582 0 8 1485 534 229 61 141 chr1 118041617 118041805 -79153627 + B3A SINE B2 27 197 -1 8 1485 25 0 0 0 chr1 118042320 118042345 -79153087 + AT_rich Low_complexity Low_complexity 1 25 0 8 1485 188 167 0 20 chr1 118042655 118042704 -79152728 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1485 345 391 76 23 chr1 118042788 118043050 -79152382 - B4A SINE B4 -16 276 1 8 1485 186 118 0 0 chr1 118043365 118043399 -79152033 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 8 1485 1111 189 209 17 chr1 118044139 118044298 -79151134 - RMER17C LTR ERVK 0 410 188 8 1485 405 0 0 0 chr1 118044298 118044343 -79151089 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1485 1111 189 209 17 chr1 118044343 118044527 -79150905 - RMER17C LTR ERVK -223 187 2 8 1485 1953 318 54 13 chr1 118044537 118045254 -79150178 - Lx8 LINE L1 -318 7155 6409 8 1485 663 324 47 28 chr1 118047027 118047240 -79148192 + B4A SINE B4 10 226 -66 8 1485 351 0 0 0 chr1 118047279 118047318 -79148114 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1485 324 182 0 0 chr1 118047318 118047406 -79148026 + GA-rich Low_complexity Low_complexity 1 88 0 9 1485 207 0 0 0 chr1 118047412 118047435 -79147997 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1485 252 0 0 0 chr1 118047435 118047462 -79147970 + (TA)n Simple_repeat Simple_repeat 2 29 0 9 1485 1233 299 15 3 chr1 118048159 118048488 -79146944 + MTD LTR MaLR 1 333 -86 9 1485 396 0 0 0 chr1 118048688 118048732 -79146700 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1485 225 0 0 0 chr1 118049363 118049388 -79146044 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1485 813 152 15 0 chr1 118049606 118049738 -79145694 - B1_Mur4 SINE Alu -10 140 7 9 1485 1125 62 7 20 chr1 118050575 118050724 -79144708 + B1_Mm SINE Alu 1 147 0 9 1485 291 237 82 0 chr1 118050734 118050831 -79144601 - Charlie12 DNA MER1_type -2738 135 31 9 1485 340 224 47 0 chr1 118050745 118050830 -79144602 + RMER30 DNA MER1_type 82 170 -32 1 1485 375 281 0 15 chr1 118051193 118051292 -79144140 + B3A SINE B2 11 108 -90 1 1485 746 202 53 27 chr1 118051360 118051548 -79143884 - Lx9 LINE L1 -148 7496 7304 1 1485 744 348 29 29 chr1 118052286 118052564 -79142868 - B4A SINE B4 0 292 15 1 1485 634 277 79 0 chr1 118053185 118053387 -79142045 - ID_B1 SINE B4 -3 221 4 1 1485 495 157 0 0 chr1 118053445 118053553 -79141879 + CT-rich Low_complexity Low_complexity 1 108 0 1 1485 528 122 0 0 chr1 118054262 118054344 -79141088 + (TCTCC)n Simple_repeat Simple_repeat 5 86 0 1 1485 489 318 66 30 chr1 118055087 118055285 -79140147 - B3 SINE B2 -11 205 1 1 1485 254 215 0 15 chr1 118055699 118055765 -79139667 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1485 859 253 153 22 chr1 118055829 118056104 -79139328 - MTE2b LTR MaLR -61 318 8 1 1485 412 355 18 12 chr1 118056124 118056292 -79139140 - MLT1F2 LTR MaLR -381 179 11 1 1485 952 308 34 19 chr1 118056328 118056593 -79138839 + B4 SINE B4 4 272 -20 1 1485 750 43 0 0 chr1 118056623 118056717 -79138715 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1485 468 0 0 0 chr1 118056717 118056768 -79138664 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1485 482 345 116 25 chr1 118057744 118057985 -79137447 - B4A SINE B4 -22 270 8 1 1485 6694 40 30 5 chr1 118058106 118058951 -79136481 + L1Md_F2 LINE L1 5716 6581 -1 1 1485 186 128 0 0 chr1 118059249 118059288 -79136144 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1 1485 547 326 75 5 chr1 118059288 118059476 -79135956 - B4A SINE B4 -71 221 21 1 1485 1528 96 67 22 chr1 118059889 118060156 -79135276 - L1_Mus3 LINE L1 -1 6637 6359 1 1485 547 188 22 0 chr1 118060267 118060481 -79134951 + CT-rich Low_complexity Low_complexity 1 218 0 1 1485 440 372 95 42 chr1 118060638 118060902 -79134530 - B4A SINE B4 -14 278 1 1 1485 3313 43 5 0 chr1 118060947 118061341 -79134091 - MTA_Mm LTR MaLR 0 396 1 1 1485 5177 154 50 9 chr1 118061948 118062957 -79132475 - Lx2 LINE L1 -1 5882 4833 1 1485 2284 184 5 0 chr1 118062956 118063396 -79132036 + Lx2 LINE L1 5902 6343 -654 1 1485 243 0 0 0 chr1 118063419 118063446 -79131986 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1485 5960 91 114 0 chr1 118063446 118064482 -79130950 - L1_Mus3 LINE L1 -15 6623 5500 1 1485 253 79 0 0 chr1 118064468 118064506 -79130926 + Lx2B LINE L1 6333 6370 -630 1 1485 3858 146 13 9 chr1 118064506 118065135 -79130297 + Lx LINE L1 6024 6654 0 1 1485 297 0 0 0 chr1 118065192 118065225 -79130207 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1485 3047 50 3 0 chr1 118065406 118065786 -79129646 + L1Md_F2 LINE L1 6202 6582 0 1 1485 853 287 137 58 chr1 118066764 118067123 -79128309 - MTD LTR MaLR -23 396 10 1 1485 331 240 13 0 chr1 118068484 118068559 -79126873 - RMER15 LTR ERVL -108 467 392 1 1485 330 324 65 0 chr1 118069169 118069277 -79126155 + PB1D10 SINE Alu 1 115 -2 1 1485 206 227 0 22 chr1 118069562 118069607 -79125825 + GA-rich Low_complexity Low_complexity 5 48 0 1 1485 339 300 114 51 chr1 118069607 118069765 -79125667 + B4A SINE B4 125 292 0 1 1485 234 191 0 0 chr1 118069968 118070015 -79125417 + T-rich Low_complexity Low_complexity 1 47 0 1 1485 2485 108 40 15 chr1 118070029 118070425 -79125007 - L1Md_F2 LINE L1 -1 6581 6176 1 1485 181 314 93 0 chr1 118070601 118070687 -79124745 - MIRb SINE MIR -121 147 54 1 1485 642 282 41 73 chr1 118071136 118071211 -79124221 - URR1A DNA MER1_type -15 211 149 1 1485 6622 98 29 4 chr1 118071211 118072181 -79123251 - Lx3_Mus LINE L1 0 7009 6016 1 1485 642 282 41 73 chr1 118072181 118072323 -79123109 - URR1A DNA MER1_type -78 148 1 1 1485 5681 156 32 63 chr1 118072325 118073638 -79121794 - L1_Mur2 LINE L1 -720 5157 3886 1 1485 2460 236 67 6 chr1 118073692 118074320 -79121112 + Lx5 LINE L1 6385 7050 0 1 1485 605 329 42 102 chr1 118074571 118075051 -79120381 - MT2A LTR ERVL -82 451 1 1 1485 399 68 0 0 chr1 118075822 118075881 -79119551 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1485 211 259 91 18 chr1 118075920 118075975 -79119457 - RSINE1 SINE B4 -41 124 66 1 1485 255 257 148 28 chr1 118076488 118076596 -79118836 + RSINE1 SINE B4 35 155 -10 1 1485 338 61 20 0 chr1 118076597 118076646 -79118786 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1 1485 596 328 51 20 chr1 118076686 118076882 -79118550 + B4A SINE B4 5 206 -86 1 1485 435 211 0 0 chr1 118076887 118076982 -79118450 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1485 492 18 0 0 chr1 118077465 118077522 -79117910 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1485 332 347 113 64 chr1 118077617 118077882 -79117550 - B4 SINE B4 -12 280 3 1 1485 189 0 0 0 chr1 118077916 118077937 -79117495 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1485 409 322 50 73 chr1 118078384 118078806 -79116626 - Lx8 LINE L1 -11 7462 7051 1 1485 259 236 103 52 chr1 118079053 118079169 -79116263 - MIRm SINE MIR -67 209 88 1 1485 234 0 0 0 chr1 118079594 118079620 -79115812 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1485 472 322 27 0 chr1 118079638 118079784 -79115648 + RSINE1 SINE B4 13 162 -3 1 1485 1365 242 2 130 chr1 118079995 118080427 -79115005 + MTE2b LTR MaLR 1 377 -2 1 1485 21 0 0 0 chr1 118080438 118080459 -79114973 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 214 319 58 0 chr1 118080462 118080531 -79114901 + ID4 SINE ID 2 74 -9 1 1485 371 388 27 13 chr1 118082134 118082283 -79113149 + RSINE1 SINE B4 8 158 -7 1 1485 489 279 95 0 chr1 118083313 118083460 -79111972 + AmnSINE1 SINE SINE 346 506 -69 1 1485 414 0 0 0 chr1 118084003 118084049 -79111383 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1485 777 318 25 17 chr1 118084049 118084289 -79111143 + B4A SINE B4 11 252 -40 1 1485 461 355 33 7 chr1 118084270 118084423 -79111009 + B4A SINE B4 128 284 -8 1 1485 494 203 7 0 chr1 118084450 118084593 -79110839 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 1485 1016 117 7 0 chr1 118085976 118086121 -79109311 - B1_Mus1 SINE Alu -2 146 1 1 1485 985 91 0 0 chr1 118086587 118086719 -79108713 + B1_Mus1 SINE Alu 11 142 -6 1 1485 542 362 9 128 chr1 118088146 118088475 -79106957 + B4A SINE B4 3 292 0 1 1485 195 268 42 0 chr1 118089394 118089465 -79105967 + MER5A DNA MER1_type 2 75 -114 1 1485 788 239 25 102 chr1 118089466 118089662 -79105770 + B3A SINE B2 2 182 -11 1 1485 2087 125 75 0 chr1 118090192 118090537 -79104895 - Lx LINE L1 0 6654 6284 1 1485 831 209 59 8 chr1 118090595 118090831 -79104601 - L1_Mur3 LINE L1 -3824 2056 1809 1 1485 415 87 0 28 chr1 118090832 118090903 -79104529 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1485 206 219 31 15 chr1 118090913 118090978 -79104454 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 1485 286 347 10 0 chr1 118090989 118091087 -79104345 - MIR SINE MIR -100 162 64 1 1485 716 320 32 25 chr1 118091242 118091527 -79103905 + B4A SINE B4 2 288 -4 1 1485 391 113 0 27 chr1 118091794 118091867 -79103565 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1 1485 244 292 0 0 chr1 118092002 118092067 -79103365 + CT-rich Low_complexity Low_complexity 2 66 0 1 1485 388 312 21 48 chr1 118092070 118092215 -79103217 - B1F SINE Alu -8 141 1 1 1485 753 348 25 21 chr1 118092365 118092644 -79102788 + B4 SINE B4 1 280 -12 1 1485 186 118 0 0 chr1 118092661 118092695 -79102737 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1485 320 266 52 21 chr1 118092962 118093058 -79102374 - B4A SINE B4 -5 287 189 1 1485 453 92 0 0 chr1 118094423 118094499 -79100933 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1485 761 362 28 38 chr1 118094516 118094806 -79100626 - B4A SINE B4 -4 288 2 1 1485 216 135 0 0 chr1 118094882 118094919 -79100513 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1485 238 330 31 0 chr1 118095049 118095131 -79100301 - MIRc SINE MIR -112 164 76 1 1485 870 286 96 27 chr1 118095522 118095856 -79099576 + ORR1E LTR MaLR 3 359 0 1 1486 676 78 17 0 chr1 118095958 118096074 -79099358 - L1_Mus3 LINE L1 -5 6633 6516 1 1486 254 260 82 10 chr1 118096123 118096220 -79099212 + Charlie5 DNA MER1_type 18 121 -2503 1 1486 366 143 0 0 chr1 118096581 118096644 -79098788 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1486 1966 125 65 18 chr1 118096644 118097026 -79098406 - Lx LINE L1 -49 6605 6206 1 1486 3094 172 2 0 chr1 118097025 118097583 -79097849 + L1_Mm LINE L1 5096 5654 -229 1 1486 465 377 12 24 chr1 118097585 118097751 -79097681 - B4A SINE B4 -65 227 64 1 1486 315 0 0 0 chr1 118098287 118098322 -79097110 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1486 861 290 87 39 chr1 118098452 118098786 -79096646 + MTEa LTR MaLR 30 379 0 1 1486 324 0 0 0 chr1 118099739 118099775 -79095657 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1486 622 348 57 46 chr1 118099825 118100087 -79095345 - B4A SINE B4 -26 266 2 1 1486 449 99 123 0 chr1 118100142 118100223 -79095209 + L1Md_F2 LINE L1 6480 6570 -12 1 1486 260 226 132 0 chr1 118100245 118100298 -79095134 - B4 SINE B4 -29 263 204 1 1486 1347 238 75 26 chr1 118100314 118100328 -79095104 + MTD LTR MaLR 50 63 -356 1 1486 242 29 0 28 chr1 118100328 118100364 -79095068 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1486 1347 238 75 26 chr1 118100364 118100702 -79094730 + MTD LTR MaLR 64 410 -9 1 1486 807 243 109 95 chr1 118101231 118101680 -79093752 + ORR1D1 LTR MaLR 1 384 0 2 1486 320 151 57 0 chr1 118101833 118101886 -79093546 - HAL1-3A_ME LINE L1 -830 2028 1973 2 1486 262 150 32 32 chr1 118101891 118102015 -79093417 + (TG)n Simple_repeat Simple_repeat 1 124 0 2 1486 263 28 28 0 chr1 118102032 118102068 -79093364 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1486 189 121 0 0 chr1 118102303 118102336 -79093096 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1486 929 276 82 12 chr1 118103571 118103901 -79091531 - ORR1E LTR MaLR -3 356 4 2 1486 23 0 0 0 chr1 118104036 118104059 -79091373 + AT_rich Low_complexity Low_complexity 1 23 0 2 1486 1556 32 21 0 chr1 118104059 118104245 -79091187 + B2_Mm1a SINE B2 2 191 -2 2 1486 243 0 0 0 chr1 118104650 118104677 -79090755 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 1486 274 269 12 49 chr1 118104745 118104827 -79090605 - B3A SINE B2 -113 85 7 2 1486 274 338 26 0 chr1 118105042 118105119 -79090313 - ID4 SINE ID -4 79 1 2 1486 1335 129 5 0 chr1 118105315 118105524 -79089908 - Lx2 LINE L1 -14 6983 6774 2 1486 11363 130 47 8 chr1 118105526 118106519 -79088913 - Lx2 LINE L1 -357 6640 5601 2 1486 1157 178 131 43 chr1 118106519 118106824 -79088608 + IAPEY3_LTR LTR ERVK 1 332 0 2 1486 11363 220 126 35 chr1 118106824 118109014 -79086418 - Lx2 LINE L1 -277 5600 3465 2 1486 234 0 0 0 chr1 118109014 118109040 -79086392 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2 1486 11363 192 91 24 chr1 118109040 118111518 -79083914 - Lx2 LINE L1 -2413 3464 533 2 1486 415 311 72 0 chr1 118112873 118113040 -79082392 + B3A SINE B2 4 182 -16 2 1486 229 349 152 27 chr1 118113863 118114119 -79081313 + B4A SINE B4 5 292 0 2 1486 459 92 0 0 chr1 118114212 118114277 -79081155 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1486 778 314 71 4 chr1 118114771 118115040 -79080392 - B4A SINE B4 0 292 6 2 1486 243 235 53 135 chr1 118115563 118115696 -79079736 + MTE2b LTR MaLR 251 372 -7 2 1486 541 283 8 8 chr1 118115902 118116030 -79079402 + B1_Mur2 SINE Alu 12 139 -10 2 1486 513 142 16 8 chr1 118116286 118116414 -79079018 + GA-rich Low_complexity Low_complexity 1 129 0 2 1486 583 298 60 22 chr1 118116556 118116738 -79078694 + B4 SINE B4 8 196 -96 2 1486 238 336 125 27 chr1 118116657 118116954 -79078478 - RLTR21 LTR ERVK -142 1430 1105 2 1486 227 324 0 35 chr1 118116978 118117122 -79078310 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 2 1486 645 80 0 0 chr1 118117203 118117291 -79078141 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 2 1486 720 108 66 51 chr1 118117331 118117468 -79077964 - Lx LINE L1 -7 6647 6509 2 1486 881 320 52 77 chr1 118118872 118119221 -79076211 - ORR1E LTR MaLR 0 359 20 2 1486 260 344 38 69 chr1 118119285 118119416 -79076016 - MLT1J LTR MaLR -242 270 144 2 1486 228 143 0 0 chr1 118119544 118119586 -79075846 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1486 2650 21 2 273 chr1 118119803 118120335 -79075097 + RLTR10 LTR ERVK 1 388 -2 2 1486 266 260 118 40 chr1 118120336 118120488 -79074944 - L1_Mur3 LINE L1 -130 5750 5587 2 1486 261 83 0 0 chr1 118120636 118120672 -79074760 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1486 444 318 66 40 chr1 118120702 118120974 -79074458 - B4A SINE B4 -13 279 1 2 1486 220 273 8 8 chr1 118121926 118122048 -79073384 + GA-rich Low_complexity Low_complexity 2 123 0 2 1486 1234 159 38 59 chr1 118122126 118122414 -79073018 - RMER17A LTR ERVK -2 807 526 2 1486 6961 56 0 2 chr1 118122417 118123325 -79072107 - L1Md_F2 LINE L1 -13 6569 5664 2 1486 720 64 0 0 chr1 118123324 118123418 -79072014 + L1Md_F2 LINE L1 5530 5623 -260 2 1486 2545 129 16 35 chr1 118123418 118124075 -79071357 - RMER17A LTR ERVK -244 507 1 2 1486 441 148 0 0 chr1 118124083 118124164 -79071268 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1486 897 303 42 21 chr1 118124166 118124449 -79070983 - B4A SINE B4 -3 289 1 2 1486 280 273 0 72 chr1 118124645 118124728 -79070704 + RSINE1 SINE B4 2 78 -87 2 1486 491 235 20 0 chr1 118124744 118124842 -79070590 - B1_Mur4 SINE Alu -7 143 44 2 1486 215 136 32 48 chr1 118125453 118125515 -79069917 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 2 1486 198 103 0 0 chr1 118126002 118126031 -79069401 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1486 429 307 44 18 chr1 118126114 118126327 -79069105 - Tigger7 DNA MER2_type -106 233 10 2 1486 316 307 201 14 chr1 118127214 118127353 -79068079 + B4A SINE B4 2 166 -126 2 1486 464 72 0 14 chr1 118127481 118127551 -79067881 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1486 345 47 0 0 chr1 118127560 118127603 -79067829 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1486 1014 305 43 49 chr1 118128848 118129486 -79065946 - RLTR6-int LTR ERV1 -2023 5578 4931 2 1486 279 0 0 0 chr1 118129486 118129517 -79065915 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1486 1014 299 33 44 chr1 118129517 118129669 -79065763 - RLTR6-int LTR ERV1 -2743 5035 4945 2 1486 1685 149 20 0 chr1 118129956 118130258 -79065174 - L1_Mm LINE L1 -1072 4811 4504 2 1486 528 286 69 52 chr1 118130619 118131025 -79064407 - RLTR6-int LTR ERV1 -6083 1695 1283 2 1486 473 357 30 100 chr1 118132446 118132738 -79062694 + B4A SINE B4 3 273 -19 2 1486 221 77 0 49 chr1 118132738 118132779 -79062653 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2 1486 255 79 0 0 chr1 118132803 118132841 -79062591 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1486 381 330 110 0 chr1 118133149 118133322 -79062110 - B3 SINE B2 -11 205 14 2 1486 763 306 0 15 chr1 118133730 118133929 -79061503 - B3A SINE B2 -1 197 2 2 1486 213 211 0 0 chr1 118134850 118134907 -79060525 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1486 303 380 0 0 chr1 118134929 118135092 -79060340 + (TATG)n Simple_repeat Simple_repeat 4 166 0 2 1486 285 378 7 0 chr1 118135031 118135179 -79060253 + (TG)n Simple_repeat Simple_repeat 2 150 0 2 1486 405 0 0 0 chr1 118135195 118135240 -79060192 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1486 698 294 99 26 chr1 118135319 118135351 -79060081 - B4 SINE B4 0 292 266 2 1486 297 0 0 0 chr1 118135351 118135384 -79060048 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1486 315 0 0 0 chr1 118135384 118135418 -79060014 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1486 698 294 99 26 chr1 118135418 118135656 -79059776 - B4 SINE B4 -27 265 2 2 1486 560 317 36 4 chr1 118135657 118135882 -79059550 - MLT2C1 LTR ERVL -165 232 1 2 1486 371 336 34 0 chr1 118136118 118136237 -79059195 + B4A SINE B4 2 124 -168 2 1486 2640 181 31 25 chr1 118136916 118137432 -79058000 + RLTR28 LTR ERVL 1 519 -5 2 1486 261 221 0 0 chr1 118137528 118137596 -79057836 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1486 236 299 112 52 chr1 118138253 118138486 -79056946 - L1MC LINE L1 -2180 5702 5456 2 1486 243 192 0 0 chr1 118138635 118138708 -79056724 + CT-rich Low_complexity Low_complexity 1 73 0 2 1486 363 23 0 0 chr1 118138713 118138757 -79056675 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1486 842 291 63 51 chr1 118141141 118141535 -79053897 + MTE2a LTR MaLR 1 404 -15 2 1486 375 381 73 73 chr1 118141804 118142090 -79053342 + B4 SINE B4 2 287 -5 2 1486 265 361 56 0 chr1 118142239 118142347 -79053085 + PB1D10 SINE Alu 3 116 -1 2 1486 4240 167 82 42 chr1 118142828 118143749 -79051683 - RMER17B LTR ERVK 0 958 1 2 1486 384 40 0 0 chr1 118143912 118143962 -79051470 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1486 245 383 62 28 chr1 118144094 118144239 -79051193 - B4A SINE B4 -142 150 1 2 1486 896 271 19 5 chr1 118144695 118144910 -79050522 - ID_B1 SINE B4 -1 223 6 2 1486 342 250 112 61 chr1 118145167 118145265 -79050167 - PB1 SINE Alu 0 127 25 2 1486 673 281 16 46 chr1 118145326 118145520 -79049912 - B4A SINE B4 -6 286 99 2 1486 536 349 73 62 chr1 118146221 118146493 -79048939 - B4 SINE B4 -4 288 14 2 1486 375 371 23 0 chr1 118146680 118146855 -79048577 - B3A SINE B2 -18 180 2 2 1486 342 37 0 0 chr1 118147321 118147375 -79048057 + L1Md_T LINE L1 6529 6582 0 2 1486 517 188 41 14 chr1 118147956 118148102 -79047330 - Lx9 LINE L1 -1 7643 7494 2 1486 728 355 0 5 chr1 118148172 118148373 -79047059 + B4A SINE B4 1 200 -92 2 1486 422 357 21 0 chr1 118148399 118148539 -79046893 + RSINE1 SINE B4 10 152 -13 2 1486 306 0 0 0 chr1 118148654 118148688 -79046744 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1486 417 39 0 0 chr1 118148984 118149035 -79046397 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1486 351 282 353 5 chr1 118149888 118150095 -79045337 - B4A SINE B4 -12 280 2 2 1486 394 287 0 65 chr1 118150792 118150900 -79044532 - B1F2 SINE Alu 0 149 49 2 1486 227 215 25 25 chr1 118151343 118151424 -79044008 + A-rich Low_complexity Low_complexity 4 84 0 2 1486 366 300 260 21 chr1 118151541 118151776 -79043656 + B4 SINE B4 1 291 -1 2 1486 1426 270 50 18 chr1 118151776 118152176 -79043256 + MTC LTR MaLR 1 413 -8 2 1486 23 0 0 0 chr1 118152254 118152277 -79043155 + AT_rich Low_complexity Low_complexity 1 23 0 2 1486 399 262 15 45 chr1 118152568 118152700 -79042732 + MTEb LTR MaLR 252 379 0 2 1486 270 95 0 0 chr1 118152881 118152923 -79042509 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1486 358 308 192 0 chr1 118152939 118153059 -79042373 - RSINE1 SINE B4 -6 159 17 2 1486 2475 226 41 2 chr1 118153505 118154067 -79041365 - RMER1B Other Other -4 1062 479 2 1486 639 299 40 0 chr1 118154468 118154645 -79040787 + B4 SINE B4 4 187 -105 2 1486 513 304 45 39 chr1 118155052 118155230 -79040202 + MTE2a LTR MaLR 1 179 -240 2 1486 1431 261 78 8 chr1 118155241 118155623 -79039809 - MTD LTR MaLR -5 414 6 2 1486 722 293 17 67 chr1 118155630 118155868 -79039564 + MTE2a LTR MaLR 154 379 0 2 1486 1167 167 9 16 chr1 118156632 118156889 -79038543 + L1_Mus4 LINE L1 6377 6597 -39 2 1486 213 183 0 0 chr1 118156915 118156975 -79038457 + CT-rich Low_complexity Low_complexity 2 61 0 2 1486 597 40 0 0 chr1 118156975 118157051 -79038381 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1486 552 281 31 50 chr1 118158311 118158472 -79036960 - ORR1D2 LTR MaLR -212 158 1 2 1486 244 260 138 38 chr1 118158478 118158558 -79036874 + B4 SINE B4 43 130 -162 3 1486 192 377 26 0 chr1 118159346 118159423 -79036009 + MIR SINE MIR 78 156 -106 3 1486 1544 257 28 17 chr1 118159475 118159827 -79035605 - MTEa LTR MaLR -6 373 18 3 1486 2408 202 49 16 chr1 118161021 118161593 -79033839 - RLTR22_Mur LTR ERVK -1257 591 1 3 1486 225 291 25 8 chr1 118162390 118162508 -79032924 + (TTTA)n Simple_repeat Simple_repeat 4 123 0 3 1486 35 0 0 0 chr1 118162587 118162622 -79032810 + AT_rich Low_complexity Low_complexity 1 35 0 3 1486 623 321 108 26 chr1 118162692 118162961 -79032471 - B4 SINE B4 0 292 2 3 1486 217 278 14 14 chr1 118163340 118163413 -79032019 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1486 432 320 63 44 chr1 118163468 118163674 -79031758 - B4A SINE B4 -82 210 1 3 1486 1082 301 31 22 chr1 118164277 118164650 -79030782 + MTE2b LTR MaLR 1 379 0 3 1486 266 327 12 91 chr1 118164999 118165164 -79030268 + MIRb SINE MIR 81 232 -36 3 1486 1118 278 23 37 chr1 118165394 118165693 -79029739 + MTE2b LTR MaLR 3 297 -82 3 1486 236 183 68 40 chr1 118166415 118166489 -79028943 - MLT1A1 LTR MaLR -16 392 317 3 1486 270 227 19 130 chr1 118166795 118166957 -79028475 - RMER17C LTR ERVK -86 324 181 3 1486 496 354 188 3 chr1 118166992 118167295 -79028137 + ORR1E LTR MaLR 1 359 0 3 1486 327 311 94 30 chr1 118167567 118167769 -79027663 + MIR SINE MIR 14 228 -34 3 1486 325 252 24 137 chr1 118167876 118168000 -79027432 - HAL1-3A_ME LINE L1 -773 2085 1976 3 1486 215 125 60 40 chr1 118168001 118168051 -79027381 + (TCTCTG)n Simple_repeat Simple_repeat 6 56 0 3 1486 254 227 11 54 chr1 118168048 118168063 -79027369 + (TATG)n Simple_repeat Simple_repeat 1 14 0 3 1486 423 0 0 0 chr1 118168063 118168110 -79027322 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1486 254 227 11 54 chr1 118168110 118168187 -79027245 + (TATG)n Simple_repeat Simple_repeat 2 76 0 3 1486 381 315 220 14 chr1 118168258 118168481 -79026951 - B4A SINE B4 -23 269 1 3 1486 11265 228 76 76 chr1 118168941 118173472 -79021960 - ETnERV2-int LTR ERVK -211 7195 2935 3 1486 573 191 28 0 chr1 118173487 118173607 -79021825 - RMER16-int LTR ERVK -4208 1198 1089 3 1486 2091 166 147 35 chr1 118173612 118174124 -79021308 - RMER16-int LTR ERVK -4587 819 251 3 1486 422 273 39 34 chr1 118174274 118174452 -79020980 - RLTR45-int LTR ERVK -6878 366 188 3 1486 787 208 8 0 chr1 118174752 118174882 -79020550 - ETnERV2-int LTR ERVK -206 7200 7070 3 1486 305 279 9 9 chr1 118175499 118175604 -79019828 + CT-rich Low_complexity Low_complexity 1 105 0 3 1486 736 309 144 4 chr1 118175799 118176069 -79019363 - MTEa LTR MaLR -19 360 53 3 1486 1160 304 12 41 chr1 118177362 118177759 -79017673 + MTE2a LTR MaLR 4 366 -13 3 1486 572 370 54 25 chr1 118178093 118178370 -79017062 + B4A SINE B4 8 292 0 3 1486 210 156 0 0 chr1 118178410 118178455 -79016977 + GA-rich Low_complexity Low_complexity 2 46 0 3 1486 566 347 17 6 chr1 118178865 118179039 -79016393 + ID_B1 SINE B4 2 177 -47 3 1486 399 73 0 0 chr1 118179180 118179235 -79016197 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 1486 758 187 45 0 chr1 118179239 118179373 -79016059 - B1_Mus1 SINE Alu -4 144 5 3 1486 300 338 52 38 chr1 118179380 118179592 -79015840 - B3 SINE B2 -1 215 1 3 1486 243 0 0 0 chr1 118179885 118179912 -79015520 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1486 662 327 24 9 chr1 118179941 118180151 -79015281 - ID_B1 SINE B4 -7 217 5 3 1486 1078 79 0 0 chr1 118180274 118180413 -79015019 - B1_Mus1 SINE Alu -8 140 2 3 1486 394 280 102 23 chr1 118181024 118181240 -79014192 - L1_Rod LINE L1 -2562 3285 3053 3 1486 419 370 123 23 chr1 118181451 118181711 -79013721 + B4A SINE B4 3 288 -4 3 1486 383 53 0 34 chr1 118181744 118181803 -79013629 + (CATA)n Simple_repeat Simple_repeat 4 60 0 3 1486 2906 172 99 19 chr1 118182417 118183010 -79012422 - RLTR26 LTR ERVK 0 642 2 3 1486 699 87 0 0 chr1 118183550 118183654 -79011778 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 1486 578 323 84 5 chr1 118183660 118183850 -79011582 - B4 SINE B4 -16 276 72 3 1486 910 273 52 63 chr1 118183999 118184382 -79011050 - MTE2b LTR MaLR 0 379 1 3 1486 191 121 69 0 chr1 118185058 118185116 -79010316 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 1486 1919 194 31 26 chr1 118185510 118185929 -79009503 + MTC LTR MaLR 1 421 0 3 1486 187 376 19 29 chr1 118186248 118186352 -79009080 - MIR SINE MIR -59 149 47 3 1486 186 273 0 162 chr1 118186491 118186596 -79008836 + MIR3 SINE MIR 110 197 -11 3 1486 232 270 193 17 chr1 118186787 118186968 -79008464 - B3 SINE B2 -1 215 3 3 1486 898 260 82 110 chr1 118187295 118187769 -79007663 - MT2A LTR ERVL -2 599 1 3 1486 530 368 12 6 chr1 118187901 118188065 -79007367 - B3A SINE B2 -30 168 4 3 1486 661 298 88 8 chr1 118188378 118188618 -79006814 + MER2 DNA MER2_type 86 344 -1 3 1486 207 0 0 0 chr1 118189165 118189188 -79006244 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1486 826 274 168 65 chr1 118189189 118189529 -79005903 + MTD LTR MaLR 26 400 -19 3 1486 3664 133 8 5 chr1 118189531 118190289 -79005143 + Lx2A1 LINE L1 5190 5948 -1060 3 1486 605 340 5 23 chr1 118190773 118190993 -79004439 - ID_B1 SINE B4 -7 217 2 3 1486 480 282 0 0 chr1 118191276 118191400 -79004032 - B1_Mur1 SINE Alu -21 128 5 3 1486 940 243 32 39 chr1 118191612 118191891 -79003541 - Tigger15a DNA TcMar -29 686 410 3 1486 273 346 72 72 chr1 118192156 118192194 -79003238 - B3A SINE B2 -5 193 152 3 1486 335 23 23 0 chr1 118192194 118192238 -79003194 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1486 273 346 72 72 chr1 118192238 118192392 -79003040 - B3A SINE B2 -47 151 2 3 1486 598 320 125 26 chr1 118192799 118193104 -79002328 - Lx8 LINE L1 -59 7414 7080 3 1486 337 362 17 6 chr1 118193129 118193304 -79002128 - Lx8 LINE L1 -1070 6403 6227 3 1486 489 34 0 0 chr1 118193348 118193407 -79002025 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1486 225 0 0 0 chr1 118193407 118193431 -79002001 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1486 376 337 0 11 chr1 118193598 118193688 -79001744 + RSINE1 SINE B4 32 120 -45 3 1486 243 311 70 40 chr1 118193764 118193965 -79001467 - L1M5 LINE L1 -403 5721 5515 3 1486 342 0 0 0 chr1 118194083 118194121 -79001311 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1486 510 136 17 8 chr1 118194124 118194243 -79001189 + GA-rich Low_complexity Low_complexity 1 120 0 3 1486 1121 64 0 0 chr1 118195311 118195452 -78999980 + B1_Mm SINE Alu 1 141 -6 3 1486 560 343 63 37 chr1 118195698 118196046 -78999386 - ORR1E LTR MaLR -2 357 1 3 1486 237 360 87 16 chr1 118196339 118196466 -78998966 + ORR1E LTR MaLR 1 136 -223 3 1486 424 325 33 0 chr1 118196609 118196729 -78998703 - B4 SINE B4 -84 208 85 3 1486 1040 286 117 11 chr1 118196826 118197371 -78998061 + L1MA4 LINE L1 5328 5930 -370 3 1486 373 374 0 0 chr1 118197655 118197778 -78997654 + ID_B1 SINE B4 81 203 -21 3 1486 384 279 9 9 chr1 118197978 118198083 -78997349 + RSINE1 SINE B4 5 109 -56 3 1486 567 0 0 0 chr1 118198111 118198174 -78997258 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1486 1613 198 36 6 chr1 118198600 118198936 -78996496 + ORR1B1 LTR MaLR 25 370 -24 3 1486 2514 194 75 0 chr1 118198936 118199426 -78996006 + RLTR11A2 LTR ERVK 1 527 0 3 1486 335 278 129 9 chr1 118199684 118199800 -78995632 - ID_B1 SINE B4 -94 130 1 3 1486 290 329 92 14 chr1 118200684 118200891 -78994541 + L2a LINE L2 3202 3424 -2 3 1486 231 317 29 28 chr1 118201043 118201183 -78994249 + MIRc SINE MIR 66 203 -5 3 1486 23 0 0 0 chr1 118201530 118201553 -78993879 + AT_rich Low_complexity Low_complexity 1 23 0 3 1486 647 340 74 77 chr1 118201618 118201971 -78993461 - MTEa LTR MaLR -23 356 5 3 1486 2988 243 30 2 chr1 118201993 118202631 -78992801 + Lx7 LINE L1 6090 6745 -951 3 1486 892 244 150 0 chr1 118202632 118202886 -78992546 - ORR1B2 LTR MaLR -75 292 1 3 1486 5472 211 68 13 chr1 118202886 118204198 -78991234 - ORR1B2-int LTR MaLR 0 1509 126 3 1486 404 271 142 60 chr1 118204250 118204668 -78990764 + Lx7 LINE L1 7240 7691 -5 3 1486 231 346 63 19 chr1 118204707 118204866 -78990566 - MTE-int LTR MaLR -2 1578 1413 3 1486 273 418 13 27 chr1 118205002 118205152 -78990280 + B4A SINE B4 4 151 -141 3 1486 342 0 0 0 chr1 118205312 118205350 -78990082 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1486 270 217 0 0 chr1 118205350 118205410 -78990022 + GA-rich Low_complexity Low_complexity 1 60 0 3 1486 1954 155 50 37 chr1 118206194 118206576 -78988856 - MTB_Mm LTR MaLR -8 399 13 3 1486 1574 116 108 0 chr1 118206743 118207001 -78988431 + RLTR33 LTR ERVK 1 286 -392 3 1486 929 150 109 6 chr1 118207080 118207254 -78988178 - MTB_Mm LTR MaLR -8 399 208 3 1486 1826 215 0 6 chr1 118207266 118207603 -78987829 + RLTR33 LTR ERVK 344 678 0 3 1486 441 344 0 16 chr1 118209247 118209371 -78986061 + B3A SINE B2 1 122 -76 3 1486 528 143 9 18 chr1 118209459 118209573 -78985859 + GA-rich Low_complexity Low_complexity 2 114 0 3 1486 1218 284 68 6 chr1 118209796 118210147 -78985285 - MTEa LTR MaLR -2 377 5 3 1486 315 315 75 16 chr1 118210388 118210575 -78984857 + L2 LINE L2 2497 2694 -725 3 1486 458 70 14 0 chr1 118210618 118210689 -78984743 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1486 303 28 0 0 chr1 118210689 118210724 -78984708 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1486 508 296 204 9 chr1 118211212 118211437 -78983995 - B4A SINE B4 -21 271 3 3 1486 281 217 75 33 chr1 118211636 118211752 -78983680 - L1M4 LINE L1 -767 5417 5293 3 1486 761 69 23 15 chr1 118212010 118212142 -78983290 + L1Md_F3 LINE L1 6452 6584 0 4 1486 571 302 71 77 chr1 118212199 118212520 -78982912 - RLTR26 LTR ERVK -92 535 168 4 1486 21 0 0 0 chr1 118212688 118212709 -78982723 + AT_rich Low_complexity Low_complexity 1 21 0 4 1486 189 0 0 0 chr1 118213293 118213314 -78982118 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1486 348 191 103 0 chr1 118213457 118213525 -78981907 + ID4 SINE ID 5 79 -4 4 1486 342 59 73 0 chr1 118213650 118213718 -78981714 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 1486 6379 69 52 6 chr1 118214293 118215166 -78980266 + L1Md_F2 LINE L1 5658 6570 -12 4 1486 512 279 111 37 chr1 118215337 118215769 -78979663 - L1M4 LINE L1 -3423 2723 2260 4 1486 226 206 75 11 chr1 118215890 118215983 -78979449 - Looper DNA PiggyBac -894 664 566 4 1486 243 352 28 0 chr1 118216109 118216180 -78979252 + PB1D10 SINE Alu 3 75 -42 4 1486 338 75 0 36 chr1 118216198 118216253 -78979179 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1486 222 37 0 0 chr1 118216254 118216281 -78979151 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1486 535 288 33 42 chr1 118217023 118217237 -78978195 - B3 SINE B2 0 216 5 4 1486 241 302 22 107 chr1 118217825 118217973 -78977459 + B2_Mm2 SINE B2 33 170 -25 4 1486 1815 91 79 17 chr1 118217973 118218263 -78977169 + L1_Mus2 LINE L1 6258 6565 -1 4 1486 241 302 22 107 chr1 118218263 118218292 -78977140 + B2_Mm2 SINE B2 171 195 0 4 1486 225 65 0 0 chr1 118218335 118218366 -78977066 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1486 218 297 0 59 chr1 118218409 118218477 -78976955 - B3A SINE B2 -78 120 57 4 1486 978 56 0 0 chr1 118218501 118218626 -78976806 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 4 1486 201 39 0 0 chr1 118219116 118219142 -78976290 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1486 198 0 0 0 chr1 118219326 118219348 -78976084 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 4 1486 357 24 0 0 chr1 118219348 118219389 -78976043 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 4 1486 225 0 0 0 chr1 118220250 118220275 -78975157 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 4 1486 4514 214 107 8 chr1 118220275 118221370 -78974062 - Lx4B LINE L1 -17 7041 5837 4 1486 1192 126 0 5 chr1 118221370 118221561 -78973871 + Lx5 LINE L1 5649 5838 -1212 4 1486 376 332 41 33 chr1 118223116 118223359 -78972073 - L1M4 LINE L1 -5806 736 492 4 1486 894 311 106 18 chr1 118223954 118224340 -78971092 + RMER5 LTR ERV1 48 467 -67 4 1486 1191 95 0 0 chr1 118224366 118224514 -78970918 - B1_Mus1 SINE Alu 0 148 1 4 1486 207 189 0 0 chr1 118224583 118224636 -78970796 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1486 1639 214 71 42 chr1 118224952 118225377 -78970055 - RMER10A LTR ERVL -5 437 1 4 1486 686 356 19 19 chr1 118226072 118226338 -78969094 - B4A SINE B4 -2 290 25 4 1487 486 0 0 0 chr1 118227112 118227166 -78968266 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1487 218 309 29 0 chr1 118227303 118227371 -78968061 - B4A SINE B4 -199 93 24 4 1487 391 314 50 19 chr1 118227727 118227919 -78967513 - MIRb SINE MIR -37 231 30 4 1487 556 285 86 75 chr1 118227985 118228143 -78967289 + B3A SINE B2 2 159 -34 4 1487 186 43 0 0 chr1 118228143 118228166 -78967266 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1487 303 285 86 75 chr1 118228166 118228193 -78967239 + B2_Mm1a SINE B2 160 188 -5 4 1487 292 119 0 33 chr1 118228931 118228992 -78966440 + (TTG)n Simple_repeat Simple_repeat 1 59 0 4 1487 626 325 97 47 chr1 118229125 118229403 -78966029 - B4 SINE B4 0 292 1 4 1487 308 301 23 75 chr1 118229785 118229918 -78965514 + Tigger5 DNA MER2_type 120 245 -2161 4 1487 676 336 20 70 chr1 118230101 118230399 -78965033 + B4 SINE B4 2 284 -8 4 1487 216 0 0 0 chr1 118230427 118230451 -78964981 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1487 423 0 0 0 chr1 118230451 118230497 -78964935 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1487 314 281 183 20 chr1 118231791 118232042 -78963390 + ORR1D1 LTR MaLR 83 374 0 4 1487 1078 205 109 4 chr1 118232166 118232396 -78963036 - MTEb LTR MaLR -5 374 121 4 1487 506 344 27 8 chr1 118233595 118233849 -78961583 - B4A SINE B4 -6 286 1 4 1487 268 357 0 0 chr1 118233874 118233972 -78961460 - PB1 SINE Alu -7 120 23 4 1487 198 0 0 0 chr1 118234004 118234026 -78961406 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1487 357 367 50 6 chr1 118234772 118234953 -78960479 - B4A SINE B4 0 292 104 4 1487 301 397 91 25 chr1 118235445 118235644 -78959788 - ID_B1 SINE B4 0 224 13 4 1487 852 281 87 12 chr1 118236025 118236277 -78959155 - MTE2b LTR MaLR -82 297 27 4 1487 205 229 0 40 chr1 118237033 118237083 -78958349 + CT-rich Low_complexity Low_complexity 3 50 0 4 1487 11108 75 10 5 chr1 118237667 118238996 -78956436 - L1Md_F2 LINE L1 -1 6581 5260 4 1487 233 29 0 29 chr1 118238996 118239031 -78956401 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1487 11108 70 18 0 chr1 118239031 118239836 -78955596 - L1Md_F2 LINE L1 -624 5259 4431 4 1487 3368 104 16 0 chr1 118239804 118240296 -78955136 - L1Md_F2 LINE L1 -2988 2895 2396 4 1487 6205 90 1 0 chr1 118240292 118241106 -78954326 - L1Md_F2 LINE L1 -5412 1204 390 4 1487 213 182 0 0 chr1 118241656 118241689 -78953743 + polypyrimidine Low_complexity Low_complexity 1 33 0 4 1487 732 71 0 0 chr1 118241691 118241790 -78953642 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1487 224 213 36 27 chr1 118242048 118242159 -78953273 + (TATAA)n Simple_repeat Simple_repeat 2 113 0 4 1487 251 272 17 127 chr1 118242162 118242280 -78953152 - MT2B LTR ERVL -315 286 182 4 1487 393 298 19 28 chr1 118242174 118242281 -78953151 - B1_Mur4 SINE Alu -27 123 18 4 1487 216 0 0 0 chr1 118242565 118242589 -78952843 + (ATG)n Simple_repeat Simple_repeat 1 24 0 4 1487 405 334 23 75 chr1 118242887 118243272 -78952160 - Lx8 LINE L1 -2 7471 7107 4 1487 464 220 58 36 chr1 118246783 118246920 -78948512 - LTR37B LTR ERV1 -20 448 309 4 1487 4597 157 70 7 chr1 118247010 118247852 -78947580 - Lx LINE L1 -138 5745 4851 4 1487 6118 126 21 7 chr1 118247852 118248747 -78946685 + Lx LINE L1 5747 6654 0 4 1487 251 270 48 0 chr1 118249431 118249494 -78945938 - MTEb LTR MaLR -310 69 4 4 1487 234 62 0 0 chr1 118249540 118249572 -78945860 + (CAT)n Simple_repeat Simple_repeat 2 33 0 4 1487 275 320 100 94 chr1 118249586 118249736 -78945696 - ORR1E LTR MaLR -16 343 182 4 1487 491 0 17 0 chr1 118249736 118249795 -78945637 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1487 275 320 100 94 chr1 118249795 118249985 -78945447 - ORR1E LTR MaLR -178 181 2 4 1487 363 329 52 81 chr1 118250554 118250726 -78944706 + B4A SINE B4 5 171 -121 4 1487 6593 90 9 5 chr1 118250885 118251744 -78943688 + L1_Mus3 LINE L1 5776 6638 0 4 1487 402 302 0 0 chr1 118252889 118252985 -78942447 - B1_Mus2 SINE Alu -49 98 3 4 1487 640 254 68 36 chr1 118253009 118253201 -78942231 - B3A SINE B2 0 198 1 4 1487 38845 30 1 0 chr1 118253267 118260163 -78935269 - L1Md_T LINE L1 0 6585 1 4 1487 3713 20 2 0 chr1 118260259 118260654 -78934778 + MTA_Mm LTR MaLR 1 396 0 4 1487 968 310 37 11 chr1 118261284 118261537 -78933895 + B4 SINE B4 9 268 -24 4 1487 309 118 0 0 chr1 118261537 118261588 -78933844 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1487 968 310 37 11 chr1 118261588 118261605 -78933827 + B4 SINE B4 269 285 -7 4 1487 397 308 137 31 chr1 118261824 118261838 -78933594 - B4 SINE B4 -9 283 271 4 1487 405 39 0 0 chr1 118261838 118261889 -78933543 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1487 397 308 137 31 chr1 118261889 118262129 -78933303 - B4 SINE B4 -22 270 2 4 1487 792 176 19 63 chr1 118262302 118262508 -78932924 + Lx4A LINE L1 6861 7057 -1 4 1487 209 232 0 51 chr1 118262688 118262747 -78932685 + G-rich Low_complexity Low_complexity 3 58 0 4 1487 630 208 135 5 chr1 118262750 118262972 -78932460 - RMER17C LTR ERVK -159 251 1 4 1487 280 318 71 71 chr1 118264127 118264438 -78930994 - IAP-d-int LTR ERVK -4588 1954 1644 4 1487 1506 199 64 119 chr1 118265012 118265277 -78930155 - RLTR41 LTR ERV1 0 446 195 4 1487 4267 79 6 4 chr1 118265277 118265811 -78929621 - L1_Mus1 LINE L1 0 6567 6033 4 1487 1506 199 64 119 chr1 118265811 118266017 -78929415 - RLTR41 LTR ERV1 -252 194 1 4 1487 719 305 37 37 chr1 118266163 118266295 -78929137 - MURVY-int LTR ERV1 -108 7344 7214 4 1487 306 0 0 0 chr1 118266295 118266329 -78929103 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1487 719 305 37 37 chr1 118266329 118266550 -78928882 - MURVY-int LTR ERV1 -239 7213 6992 4 1487 1834 254 21 27 chr1 118267069 118267555 -78927877 - MuRRS4-int LTR ERV1 -1050 4013 3531 4 1487 3767 74 7 0 chr1 118267718 118268180 -78927252 - L1_Mus2 LINE L1 0 6566 6102 4 1487 477 215 64 12 chr1 118268180 118268328 -78927104 + L1_Rod LINE L1 5665 5822 -356 4 1487 2474 79 7 18 chr1 118268361 118268712 -78926720 - L1_Mus2 LINE L1 -457 6109 5759 4 1487 21 0 0 0 chr1 118268791 118268812 -78926620 + AT_rich Low_complexity Low_complexity 1 21 0 4 1487 189 0 0 0 chr1 118268827 118268848 -78926584 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4 1487 2660 80 21 3 chr1 118268850 118269188 -78926244 - L1_Mus1 LINE L1 -2 6565 6222 4 1487 5532 90 8 1 chr1 118269208 118269961 -78925471 - L1_Mm LINE L1 -86 5797 5040 4 1487 645 315 54 65 chr1 118270093 118270558 -78924874 - MuLV-int LTR ERV1 -3156 4450 3991 4 1487 335 225 23 63 chr1 118270783 118270922 -78924510 - RLTR6-int LTR ERV1 -5462 2316 2098 4 1487 269 271 0 0 chr1 118270960 118271030 -78924402 - RLTR6-int LTR ERV1 -5581 2197 2128 4 1487 539 309 51 27 chr1 118271251 118271544 -78923888 - RLTR6-int LTR ERV1 -5998 1780 1481 4 1487 252 330 26 52 chr1 118271990 118272182 -78923250 - RLTR6-int LTR ERV1 -6877 901 715 4 1487 363 236 53 101 chr1 118272696 118272882 -78922550 - RLTR41 LTR ERV1 -14 640 324 4 1487 1222 276 59 52 chr1 118272869 118273312 -78922120 + RLTR20B3 LTR ERVK 73 518 -59 4 1487 4784 207 37 21 chr1 118273660 118274670 -78920762 - RLTR25B LTR ERVK 0 1028 3 4 1487 26 0 0 0 chr1 118275250 118275276 -78920156 + AT_rich Low_complexity Low_complexity 1 26 0 4 1487 918 98 0 0 chr1 118275403 118275556 -78919876 + (TC)n Simple_repeat Simple_repeat 2 154 0 4 1487 346 250 27 14 chr1 118275625 118275698 -78919734 - B3A SINE B2 -124 74 1 4 1487 1033 249 44 111 chr1 118275991 118276397 -78919035 - MTE2a LTR MaLR 0 379 1 4 1487 294 29 0 0 chr1 118277214 118277249 -78918183 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1487 342 303 165 32 chr1 118277473 118277691 -78917741 - RMER20B LTR ERVK -63 564 318 5 1487 523 337 43 34 chr1 118277743 118277952 -78917480 - B4A SINE B4 -81 211 1 5 1487 405 39 0 0 chr1 118278585 118278636 -78916796 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1487 3453 61 29 0 chr1 118280321 118280766 -78914666 - L1_Mus1 LINE L1 -1 6566 6109 5 1487 848 20 0 0 chr1 118280766 118280865 -78914567 + L1_Mus1 LINE L1 6015 6113 -454 5 1487 1685 255 105 25 chr1 118280858 118281363 -78914069 - L1_Rod LINE L1 -3854 1993 1443 5 1487 432 0 0 0 chr1 118281363 118281411 -78914021 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1487 1685 246 152 13 chr1 118281411 118281792 -78913640 - L1_Rod LINE L1 -4405 1442 1008 5 1487 730 243 0 20 chr1 118282060 118282207 -78913225 + B1_Mur4 SINE Alu 6 149 -1 5 1487 333 269 9 69 chr1 118282304 118282420 -78913012 - B3A SINE B2 0 198 90 5 1487 3150 210 81 91 chr1 118282440 118283331 -78912101 - L1VL2 LINE L1 -5432 903 22 5 1487 436 159 115 0 chr1 118283343 118283456 -78911976 - L1VL2 LINE L1 -6100 235 110 5 1487 692 295 79 33 chr1 118283467 118284046 -78911386 - L1M3 LINE L1 -1212 4928 4323 5 1487 4206 208 68 72 chr1 118284066 118285086 -78910346 - RMER1B Other Other -7 1059 45 5 1487 824 275 78 41 chr1 118285260 118285745 -78909687 - L1M3 LINE L1 -2000 4140 3638 5 1487 615 232 0 28 chr1 118286644 118286786 -78908646 + B1_Mur2 SINE Alu 10 147 -2 5 1487 4179 88 3 0 chr1 118287098 118287668 -78907764 - L1_Mus1 LINE L1 0 6567 5996 5 1487 386 350 0 20 chr1 118288407 118288509 -78906923 - RSINE1 SINE B4 -22 143 44 5 1487 517 346 0 0 chr1 118288543 118288676 -78906756 - RSINE1 SINE B4 -22 143 11 5 1487 24 0 0 0 chr1 118289987 118290011 -78905421 + AT_rich Low_complexity Low_complexity 1 24 0 5 1487 7472 34 0 19 chr1 118290038 118290950 -78904482 - L1Md_F2 LINE L1 -10 6572 5678 5 1487 5692 74 4 0 chr1 118290950 118291697 -78903735 + L1_Mus1 LINE L1 5668 6417 -150 5 1487 402 300 72 65 chr1 118291708 118292081 -78903351 - RLTR16 LTR ERVK -269 423 32 5 1487 6700 118 32 9 chr1 118292151 118293339 -78902093 - L1_Mus3 LINE L1 -1 6637 5423 5 1487 2121 138 6 0 chr1 118293352 118293677 -78901755 - ORR1A2 LTR MaLR 0 327 1 5 1487 22 35 0 0 chr1 118294249 118294278 -78901154 + AT_rich Low_complexity Low_complexity 1 29 0 5 1487 417 39 0 0 chr1 118296566 118296617 -78898815 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1487 180 97 0 0 chr1 118296745 118296776 -78898656 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1487 414 326 103 7 chr1 118296949 118297094 -78898338 + B4A SINE B4 107 265 -27 5 1487 258 56 0 0 chr1 118297928 118297964 -78897468 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1487 1021 131 11 0 chr1 118298384 118298560 -78896872 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1487 680 278 117 45 chr1 118298621 118298885 -78896547 - B4A SINE B4 0 292 10 5 1487 25 65 0 0 chr1 118299416 118299462 -78895970 + AT_rich Low_complexity Low_complexity 1 46 0 5 1487 1004 70 7 0 chr1 118299471 118299613 -78895819 + (GA)n Simple_repeat Simple_repeat 2 144 0 5 1487 813 299 47 102 chr1 118299637 118299998 -78895434 + ORR1E LTR MaLR 4 344 -15 5 1487 588 333 23 9 chr1 118300166 118300381 -78895051 + ID_B1 SINE B4 2 219 -5 5 1487 1218 257 26 28 chr1 118300595 118300983 -78894449 + Lx9 LINE L1 7087 7473 -171 5 1487 276 30 0 0 chr1 118300988 118301021 -78894411 + (TAA)n Simple_repeat Simple_repeat 3 35 0 5 1487 648 350 13 117 chr1 118301542 118301859 -78893573 + B4A SINE B4 7 290 -2 5 1487 231 250 42 0 chr1 118302045 118302117 -78893315 + CT-rich Low_complexity Low_complexity 1 75 0 5 1487 4389 57 4 0 chr1 118302120 118302668 -78892764 - L1Md_F2 LINE L1 -13 6569 6020 5 1487 1884 165 0 24 chr1 118302668 118303003 -78892429 - L1VL2 LINE L1 -5579 756 430 5 1487 12270 73 2 0 chr1 118303013 118304643 -78890789 - L1_Mm LINE L1 -524 5359 3727 5 1487 5546 86 0 0 chr1 118304642 118305408 -78890024 + L1_Mm LINE L1 2863 3628 -2255 5 1487 580 67 22 0 chr1 118305441 118305531 -78889901 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1487 556 300 95 53 chr1 118305568 118305811 -78889621 - B4 SINE B4 -23 269 17 5 1487 194 0 39 0 chr1 118305873 118305899 -78889533 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1487 29 28 0 0 chr1 118305999 118306035 -78889397 + AT_rich Low_complexity Low_complexity 1 36 0 5 1487 923 249 0 23 chr1 118306882 118307100 -78888332 - ID_B1 SINE B4 -9 215 3 5 1487 207 65 65 0 chr1 118307708 118307754 -78887678 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1487 25 31 0 0 chr1 118308186 118308218 -78887214 + AT_rich Low_complexity Low_complexity 1 32 0 5 1487 306 0 0 0 chr1 118308564 118308598 -78886834 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1487 1373 51 6 0 chr1 118308894 118309072 -78886360 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 5 1487 1059 286 19 0 chr1 118309425 118309700 -78885732 - MTE2b LTR MaLR -7 372 83 5 1487 514 335 97 27 chr1 118310373 118310631 -78884801 - B4 SINE B4 -12 280 5 5 1487 1066 256 50 32 chr1 118310676 118310958 -78884474 - ORR1D2 LTR MaLR -83 287 1 5 1487 450 313 53 62 chr1 118311189 118311414 -78884018 - RMER15 LTR ERVL -17 558 336 5 1487 478 167 0 0 chr1 118311416 118311500 -78883932 + RLTR1B-int LTR ERV1 3137 3220 -79 5 1487 232 276 15 8 chr1 118312694 118312785 -78882647 + Lx8 LINE L1 5714 5796 -501 5 1487 201 39 0 0 chr1 118312785 118312811 -78882621 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1487 232 290 48 27 chr1 118312811 118312921 -78882511 + Lx8 LINE L1 5795 5904 -1569 5 1487 460 317 40 52 chr1 118313124 118313297 -78882135 - B4A SINE B4 -120 172 2 5 1487 207 254 0 0 chr1 118313727 118313790 -78881642 + CT-rich Low_complexity Low_complexity 2 64 0 5 1487 252 345 46 0 chr1 118314118 118314205 -78881227 + B4A SINE B4 1 91 -201 5 1487 231 322 58 0 chr1 118314233 118314320 -78881112 + B4 SINE B4 81 172 -120 5 1487 290 317 0 0 chr1 118315124 118315206 -78880226 + B4 SINE B4 3 84 -208 5 1487 465 19 0 0 chr1 118315320 118315374 -78880058 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1487 306 298 107 68 chr1 118315816 118316021 -78879411 - Lx8 LINE L1 -1 7472 7260 5 1487 698 312 132 29 chr1 118315993 118316379 -78879053 + Lx8 LINE L1 6843 7268 -205 5 1487 431 255 262 0 chr1 118317020 118317165 -78878267 + MTE2b LTR MaLR 135 317 -62 5 1487 5430 149 18 20 chr1 118317404 118318391 -78877041 + Lx LINE L1 5693 6654 0 5 1487 362 344 121 30 chr1 118319614 118319779 -78875653 + MTD LTR MaLR 1 180 -239 5 1487 3564 109 49 9 chr1 118320033 118320586 -78874846 + L1_Mus4 LINE L1 6054 6628 -8 5 1487 25 0 0 0 chr1 118320789 118320814 -78874618 + AT_rich Low_complexity Low_complexity 1 25 0 5 1487 1649 244 66 68 chr1 118321601 118322146 -78873286 - RLTR20B3 LTR ERVK -13 564 21 5 1487 26 0 0 0 chr1 118322146 118322172 -78873260 + AT_rich Low_complexity Low_complexity 1 26 0 5 1487 6477 160 13 5 chr1 118322226 118323419 -78872013 + MYSERV16_I-int LTR ERVK 1037 2239 -87 5 1487 624 275 113 87 chr1 118323484 118323933 -78871499 + RLTR20B3 LTR ERVK 18 471 -92 5 1487 405 0 0 0 chr1 118323933 118323978 -78871454 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1487 464 265 194 0 chr1 118323978 118324036 -78871396 + RLTR20B3 LTR ERVK 472 550 -27 5 1487 510 340 71 43 chr1 118324052 118324307 -78871125 - B4 SINE B4 -27 265 4 5 1487 682 251 114 78 chr1 118325950 118326231 -78869201 + B4A SINE B4 2 292 0 5 1487 303 256 0 0 chr1 118326231 118326348 -78869084 + (CA)n Simple_repeat Simple_repeat 1 117 0 5 1487 226 328 0 0 chr1 118328669 118328730 -78866702 + ID4_ SINE ID 5 65 -18 5 1487 4253 221 19 27 chr1 118328935 118329892 -78865540 - Lx2B LINE L1 -18 6982 6034 5 1487 384 22 0 0 chr1 118330365 118330410 -78865022 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1487 273 224 51 86 chr1 118330458 118330575 -78864857 - PB1D9 SINE Alu -6 114 2 5 1487 463 298 16 0 chr1 118330476 118330597 -78864835 - B4 SINE B4 -105 187 65 5 1487 200 216 0 0 chr1 118331276 118331313 -78864119 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 5 1487 576 62 0 0 chr1 118331315 118331396 -78864036 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1487 529 274 74 6 chr1 118331475 118331651 -78863781 + RMER20A LTR ERVK 1 188 -439 5 1487 596 309 11 22 chr1 118331646 118331825 -78863607 + RMER20A LTR ERVK 333 509 -7 5 1487 321 68 0 0 chr1 118332031 118332075 -78863357 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1487 1141 314 16 51 chr1 118332371 118332744 -78862688 - MTEa LTR MaLR -3 376 17 5 1487 228 200 0 0 chr1 118334315 118334385 -78861047 + A-rich Low_complexity Low_complexity 1 70 0 5 1487 1218 174 9 0 chr1 118334564 118334788 -78860644 - URR1A DNA MER1_type 0 226 1 5 1487 547 276 113 31 chr1 118335150 118335344 -78860088 + B3 SINE B2 1 210 -6 5 1487 1084 313 7 7 chr1 118335380 118335663 -78859769 + B4 SINE B4 8 290 -2 5 1487 240 149 0 0 chr1 118335669 118335716 -78859716 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1487 190 326 131 8 chr1 118335906 118336036 -78859396 - MIR SINE MIR -1 261 116 5 1487 4101 208 11 38 chr1 118336496 118337424 -78858008 - RMER13B LTR ERVK -4 904 2 5 1487 868 107 76 8 chr1 118337450 118337582 -78857850 + B1_Mus1 SINE Alu 4 144 -4 5 1487 663 25 0 0 chr1 118337590 118337671 -78857761 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 5 1487 221 410 0 0 chr1 118337911 118338045 -78857387 + (CACCAT)n Simple_repeat Simple_repeat 3 136 0 5 1487 1181 302 10 13 chr1 118338055 118338360 -78857072 - MTEa LTR MaLR -2 377 74 5 1487 387 0 0 0 chr1 118339332 118339375 -78856057 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1487 1199 270 86 17 chr1 118340106 118340456 -78854976 - ORR1D1 LTR MaLR 0 374 1 5 1487 506 79 13 0 chr1 118340579 118340655 -78854777 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1487 836 286 25 33 chr1 118340718 118340960 -78854472 - B4 SINE B4 -52 240 1 6 1487 308 255 38 29 chr1 118341087 118341192 -78854240 + CYRA11_Mm Unknown Y-chromosome 217 322 -295 6 1487 777 193 78 0 chr1 118341099 118341265 -78854167 - URR1A DNA MER1_type -47 179 1 6 1487 214 208 42 0 chr1 118341376 118341424 -78854008 + CT-rich Low_complexity Low_complexity 4 53 0 6 1487 940 216 72 14 chr1 118342195 118342402 -78853030 - ID_B1 SINE B4 -3 221 3 6 1487 198 171 48 12 chr1 118342413 118342496 -78852936 + T-rich Low_complexity Low_complexity 2 87 0 6 1487 429 20 0 0 chr1 118344096 118344146 -78851286 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1487 505 337 45 6 chr1 118344219 118344398 -78851034 - B4 SINE B4 -49 243 58 6 1487 1389 134 0 26 chr1 118344546 118344618 -78850814 - Lx2 LINE L1 0 6997 6928 6 1487 4466 84 54 60 chr1 118344618 118345373 -78850059 - RMER17A LTR ERVK 0 751 1 6 1487 1389 134 0 26 chr1 118345373 118345529 -78849903 - Lx2 LINE L1 -70 6927 6775 6 1487 1748 132 4 0 chr1 118345529 118345801 -78849631 - Lx2 LINE L1 -354 6643 6371 6 1487 2307 165 9 2 chr1 118346083 118346508 -78848924 - Lx2 LINE L1 -627 6370 5943 6 1487 21 57 0 0 chr1 118346720 118346755 -78848677 + AT_rich Low_complexity Low_complexity 1 35 0 6 1487 481 365 22 0 chr1 118346769 118346906 -78848526 - RSINE1 SINE B4 -22 143 4 6 1487 770 304 22 38 chr1 118346922 118347240 -78848192 + Lx8 LINE L1 7076 7388 -85 6 1487 1488 239 62 15 chr1 118347266 118347666 -78847766 - MTD LTR MaLR 0 419 1 6 1487 1475 265 148 78 chr1 118347672 118348404 -78847028 - MTD-int LTR MaLR -12 1246 464 6 1487 729 23 0 0 chr1 118348644 118348731 -78846701 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1487 321 313 0 76 chr1 118348799 118349010 -78846422 - L1M4 LINE L1 -972 5174 4980 6 1487 218 56 0 27 chr1 118349010 118349047 -78846385 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 6 1487 579 29 0 0 chr1 118349112 118349181 -78846251 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1487 1359 158 85 15 chr1 118349478 118349751 -78845681 - IAPEY3_LTR LTR ERVK -34 441 1 6 1487 585 28 0 0 chr1 118350506 118350577 -78844855 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1487 636 344 36 21 chr1 118350649 118350842 -78844590 - B4A SINE B4 -96 196 1 6 1487 330 324 91 18 chr1 118351114 118351263 -78844169 + B4A SINE B4 131 290 -2 6 1487 572 76 11 0 chr1 118351338 118351430 -78844002 - L1_Mus2 LINE L1 -1 6565 6473 6 1487 342 0 0 0 chr1 118352249 118352287 -78843145 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1487 6248 78 1 26 chr1 118352911 118354186 -78841246 - L1Md_Gf LINE L1 -4254 1632 279 6 1487 19418 73 0 1 chr1 118354362 118357077 -78838355 + L1Md_F2 LINE L1 2872 5585 -298 6 185 8021 51 2 0 chr1 118357078 118358072 -78837360 + L1Md_F2 LINE L1 5587 6582 0 6 1488 713 305 75 65 chr1 118358182 118358582 -78836850 + Lx5 LINE L1 6639 7042 -8 6 1488 186 408 13 0 chr1 118358639 118358715 -78836717 + L3 LINE CR1 4329 4405 -84 6 1488 374 276 31 0 chr1 118359030 118359128 -78836304 + ID_B1 SINE B4 123 223 -1 6 1488 555 88 0 0 chr1 118359726 118359817 -78835615 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 1488 480 18 0 0 chr1 118359817 118359874 -78835558 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1488 687 319 97 8 chr1 118360112 118360371 -78835061 - B4 SINE B4 -7 285 4 6 1488 1372 246 100 9 chr1 118360841 118361181 -78834251 - MTE2b LTR MaLR -8 371 1 6 1488 184 54 26 51 chr1 118361772 118361811 -78833621 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 6 1488 551 135 0 10 chr1 118362244 118362341 -78833091 + (GGGAA)n Simple_repeat Simple_repeat 5 100 0 6 1488 22 56 0 0 chr1 118362604 118362640 -78832792 + AT_rich Low_complexity Low_complexity 1 36 0 6 1488 217 174 22 0 chr1 118363133 118363179 -78832253 + B4 SINE B4 1 47 -245 6 1488 750 161 0 0 chr1 118363468 118363642 -78831790 + GA-rich Low_complexity Low_complexity 1 174 0 6 1488 2636 121 38 14 chr1 118363745 118364163 -78831269 - L1_Mus1 LINE L1 0 6567 6140 6 1488 6295 132 18 44 chr1 118365237 118366956 -78828476 + Lx LINE L1 4979 6653 -1 6 1488 428 51 17 0 chr1 118366994 118367053 -78828379 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 6 1488 1044 261 137 58 chr1 118367058 118367453 -78827979 - RMER5 LTR ERV1 0 534 109 6 1488 1021 113 12 6 chr1 118367827 118367996 -78827436 + L1_Mus3 LINE L1 6469 6638 0 6 1488 228 184 0 0 chr1 118369834 118369883 -78825549 + GA-rich Low_complexity Low_complexity 3 51 0 6 1488 600 302 122 31 chr1 118370979 118371208 -78824224 + B4A SINE B4 1 250 -42 6 1488 315 0 0 0 chr1 118371230 118371265 -78824167 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1488 609 272 57 83 chr1 118371882 118372163 -78823269 + B4A SINE B4 2 281 -11 6 1488 249 33 0 0 chr1 118372184 118372214 -78823218 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1488 450 244 178 27 chr1 118373330 118373515 -78821917 - RMER15 LTR ERVL -4 571 359 6 1488 589 332 149 7 chr1 118373866 118374142 -78821290 + MTE2b LTR MaLR 6 320 -59 6 1488 400 183 24 0 chr1 118374360 118374442 -78820990 + Lx7 LINE L1 6985 7068 -628 6 1488 271 317 49 0 chr1 118374480 118374562 -78820870 + Lx7 LINE L1 6442 6527 -1169 6 1488 625 315 25 13 chr1 118374576 118374814 -78820618 + Lx7 LINE L1 7072 7312 -384 6 1488 5496 73 1 0 chr1 118375043 118375796 -78819636 - L1_Mm LINE L1 -333 5550 4797 6 1488 6763 120 9 1 chr1 118375795 118377019 -78818413 + Lx LINE L1 5414 6647 -7 6 1488 201 39 0 0 chr1 118377703 118377729 -78817703 + (TTG)n Simple_repeat Simple_repeat 1 26 0 6 1488 393 156 0 0 chr1 118378485 118378549 -78816883 - Lx8 LINE L1 -153 7320 7257 6 1488 692 334 88 3 chr1 118378769 118379123 -78816309 + Lx8 LINE L1 6604 6987 -486 6 1488 516 268 50 44 chr1 118379167 118379347 -78816085 - B3A SINE B2 -15 183 3 6 1488 719 282 61 94 chr1 118379804 118380147 -78815285 + ORR1E LTR MaLR 6 368 -11 6 1488 261 290 52 77 chr1 118380201 118380376 -78815056 + B4A SINE B4 9 180 -112 6 1488 2887 173 11 27 chr1 118380651 118381203 -78814229 + Lx LINE L1 6112 6654 0 6 1488 575 241 0 6 chr1 118381414 118381577 -78813855 + GA-rich Low_complexity Low_complexity 4 165 0 6 1488 470 343 76 16 chr1 118381918 118382167 -78813265 + B4A SINE B4 13 276 -16 6 1488 405 0 0 0 chr1 118382185 118382230 -78813202 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1488 680 344 11 0 chr1 118382470 118382659 -78812773 - B4 SINE B4 -21 271 81 6 1488 348 77 0 0 chr1 118383011 118383063 -78812369 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1488 602 339 18 31 chr1 118383078 118383364 -78812068 - B4A SINE B4 -8 284 3 6 1488 207 0 0 0 chr1 118383584 118383607 -78811825 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1488 449 338 37 37 chr1 118384132 118384295 -78811137 + B4 SINE B4 4 166 -126 6 1488 439 318 151 104 chr1 118384336 118384673 -78810759 + MTE2a LTR MaLR 13 365 -14 6 1488 311 214 0 0 chr1 118384925 118384981 -78810451 + B4A SINE B4 4 59 -233 6 1488 229 333 77 51 chr1 118385193 118385310 -78810122 + B1_Mur1 SINE Alu 3 122 -27 6 1488 233 372 0 0 chr1 118385320 118385406 -78810026 + ID_B1 SINE B4 126 211 -13 6 1488 287 224 104 0 chr1 118385978 118386045 -78809387 - B4 SINE B4 -18 274 201 6 1488 449 84 14 0 chr1 118386060 118386131 -78809301 - Lx2B LINE L1 -318 6682 6611 6 1488 2908 173 29 2 chr1 118386131 118386617 -78808815 + RMER19A LTR ERVK 239 737 0 6 1488 358 311 16 48 chr1 118386621 118386746 -78808686 + B4 SINE B4 35 155 -137 6 1488 268 320 27 0 chr1 118386684 118386759 -78808673 + B1F2 SINE Alu 8 84 -65 6 1488 405 141 0 0 chr1 118386765 118386850 -78808582 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1488 570 41 0 0 chr1 118387150 118387223 -78808209 + (GAAAA)n Simple_repeat Simple_repeat 5 77 0 6 1488 2013 238 50 6 chr1 118387375 118387879 -78807553 + RLTR11A LTR ERVK 3 528 0 6 1488 1494 255 24 11 chr1 118387879 118388252 -78807180 - MTEa LTR MaLR -1 378 1 6 1488 12137 28 192 1 chr1 118388381 118390791 -78804641 - L1Md_T LINE L1 0 6582 3716 6 1488 1068 151 11 0 chr1 118390952 118391131 -78804301 + URR1A DNA MER1_type 43 223 -3 6 1488 252 212 15 15 chr1 118392606 118392673 -78802759 + (ATG)n Simple_repeat Simple_repeat 3 69 0 6 1488 4822 68 3 15 chr1 118394009 118394665 -78800767 - L1Md_F2 LINE L1 -1 6581 5934 6 1488 1473 41 67 0 chr1 118394665 118394859 -78800573 + L1Md_F2 LINE L1 5764 5970 -612 6 1488 1704 167 80 141 chr1 118394863 118395123 -78800309 - RMER17C-int LTR ERVK -406 2832 2609 6 1488 289 152 0 0 chr1 118395123 118395169 -78800263 + LSU-rRNA_Hsa rRNA rRNA 4202 4247 -788 6 1488 1704 167 80 141 chr1 118395169 118395577 -78799855 - RMER17C-int LTR ERVK -406 2608 2256 6 1488 710 185 8 23 chr1 118395576 118395709 -78799723 - RMER17C-int LTR ERVK -1996 1242 1112 6 1488 830 291 62 32 chr1 118396775 118397092 -78798340 + ORR1E-int LTR MaLR 1204 1530 -50 6 1488 342 346 75 48 chr1 118397092 118397320 -78798112 + ORR1E LTR MaLR 4 237 -122 6 1488 28 48 0 0 chr1 118397794 118397836 -78797596 + AT_rich Low_complexity Low_complexity 1 42 0 6 1488 315 65 0 0 chr1 118398569 118398615 -78796817 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1488 225 191 0 0 chr1 118398694 118398736 -78796696 + MTC LTR MaLR 1 42 -379 6 1488 202 220 0 0 chr1 118398754 118398804 -78796628 + T-rich Low_complexity Low_complexity 4 53 0 6 1488 973 119 7 0 chr1 118398806 118398949 -78796483 + B1_Mus1 SINE Alu 2 145 -3 6 1488 865 165 173 40 chr1 118398951 118399153 -78796279 - Lx4B LINE L1 -6 7052 6824 6 1488 369 0 0 0 chr1 118399431 118399472 -78795960 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1488 314 354 126 20 chr1 118399505 118399724 -78795708 - B4 SINE B4 -42 250 10 6 1488 435 223 0 0 chr1 118399741 118399853 -78795579 + CT-rich Low_complexity Low_complexity 2 113 0 6 1488 257 383 30 60 chr1 118399949 118400149 -78795283 - B4A SINE B4 0 292 99 6 1488 499 315 11 22 chr1 118400552 118400734 -78794698 - MTD LTR MaLR -230 189 10 6 1488 836 267 11 6 chr1 118401451 118401628 -78793804 - B3A SINE B2 -20 178 1 6 1488 666 35 0 0 chr1 118401819 118401904 -78793528 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1488 579 126 0 0 chr1 118401938 118402033 -78793399 + (TA)n Simple_repeat Simple_repeat 1 95 0 7 1488 530 305 0 79 chr1 118402103 118402267 -78793165 - RSINE1 SINE B4 0 165 15 7 1488 383 272 106 44 chr1 118402486 118402713 -78792719 - L1M2 LINE L1 -750 5393 5153 7 1488 391 316 36 0 chr1 118402783 118402922 -78792510 - RSINE1 SINE B4 -21 144 1 7 1488 23589 168 24 6 chr1 118403045 118409214 -78786218 - Lx LINE L1 -6 6648 385 7 1488 270 274 116 40 chr1 118409264 118409591 -78785841 - L1M3 LINE L1 -1314 4826 4475 7 1488 269 306 0 16 chr1 118409967 118410065 -78785367 - ID4 SINE ID -40 112 17 7 1488 238 311 40 48 chr1 118410246 118410371 -78785061 + MLT1C LTR MaLR 71 194 -273 7 1488 366 42 0 0 chr1 118410485 118410533 -78784899 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1488 272 379 120 19 chr1 118410712 118411245 -78784187 - L2 LINE L2 -1180 2239 1653 7 1488 466 359 41 26 chr1 118411337 118411415 -78784017 + B4A SINE B4 5 83 -209 7 1488 291 54 0 0 chr1 118411415 118411452 -78783980 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1488 466 359 41 26 chr1 118411452 118411639 -78783793 + B4A SINE B4 84 273 -19 7 1488 264 200 0 0 chr1 118411661 118411721 -78783711 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1488 183 358 13 110 chr1 118411932 118412086 -78783346 + MIRb SINE MIR 14 152 -116 7 1488 394 301 35 26 chr1 118412320 118412436 -78782996 - RSINE1 SINE B4 0 165 49 7 1488 329 119 0 33 chr1 118412492 118412553 -78782879 + GA-rich Low_complexity Low_complexity 3 61 0 7 1488 23 0 0 0 chr1 118412758 118412781 -78782651 + AT_rich Low_complexity Low_complexity 1 23 0 7 1488 1091 88 0 7 chr1 118413579 118413727 -78781705 + B1_Mus1 SINE Alu 1 147 -1 7 1488 22 0 0 0 chr1 118413727 118413749 -78781683 + AT_rich Low_complexity Low_complexity 1 22 0 7 1488 272 258 45 0 chr1 118414241 118414330 -78781102 + CT-rich Low_complexity Low_complexity 2 94 0 7 1488 314 244 178 0 chr1 118414332 118414422 -78781010 - PB1D7 SINE Alu -2 118 13 7 1488 264 292 0 14 chr1 118414971 118415044 -78780388 + MER5A DNA MER1_type 42 113 -76 7 1488 5449 39 1 3 chr1 118415606 118416270 -78779162 - L1Md_F2 LINE L1 0 6582 5920 7 1488 1432 264 81 6 chr1 118416722 118417069 -78778363 - MTEa LTR MaLR -6 373 1 7 1488 349 278 58 29 chr1 118417203 118417340 -78778092 - MTC LTR MaLR -259 162 22 7 1488 1986 158 15 63 chr1 118417589 118417988 -78777444 - RMER10B LTR ERVL 0 398 19 7 1488 244 215 0 122 chr1 118418215 118418305 -78777127 - B4 SINE B4 0 292 214 7 1488 333 281 31 102 chr1 118418343 118418470 -78776962 - PB1D9 SINE Alu -1 119 2 7 1488 565 325 42 16 chr1 118418470 118418552 -78776880 - B4 SINE B4 -205 87 1 7 1488 554 118 0 11 chr1 118418899 118418993 -78776439 + (CATA)n Simple_repeat Simple_repeat 4 96 0 7 1488 903 310 10 62 chr1 118419778 118420070 -78775362 + B4 SINE B4 8 284 -8 7 1488 31 44 0 0 chr1 118421186 118421231 -78774201 + AT_rich Low_complexity Low_complexity 1 45 0 7 1488 362 333 102 31 chr1 118421300 118421622 -78773810 - L1MC LINE L1 -3597 2549 2205 7 1488 243 284 10 102 chr1 118422421 118422519 -78772913 + MT2B LTR ERVL 188 276 -325 7 1488 610 62 0 10 chr1 118422440 118422537 -78772895 + B1_Mm SINE Alu 50 141 -9 7 1488 309 51 0 0 chr1 118422537 118422576 -78772856 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1488 381 43 0 0 chr1 118422608 118422655 -78772777 + (CAT)n Simple_repeat Simple_repeat 2 48 0 7 1488 320 250 11 21 chr1 118422804 118422898 -78772534 + GA-rich Low_complexity Low_complexity 4 96 0 7 1488 402 69 0 0 chr1 118423553 118423611 -78771821 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1488 300 27 0 0 chr1 118423631 118423668 -78771764 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1488 477 0 0 0 chr1 118423843 118423896 -78771536 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 7 1488 357 288 225 75 chr1 118424878 118425118 -78770314 - B4 SINE B4 -16 276 1 7 1488 800 264 175 63 chr1 118425760 118426091 -78769341 + ORR1D1 LTR MaLR 1 368 -6 7 1488 342 0 0 0 chr1 118426347 118426385 -78769047 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1488 671 333 31 66 chr1 118426390 118426581 -78768851 - B4A SINE B4 -14 278 94 7 1488 2757 98 32 5 chr1 118426581 118426992 -78768440 + BGLII_Mus LTR ERVK 1 422 0 7 1488 671 333 31 66 chr1 118426992 118427086 -78768346 - B4A SINE B4 -199 93 3 7 1488 255 61 0 0 chr1 118427099 118427132 -78768300 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1488 1759 196 87 5 chr1 118427179 118427568 -78767864 - MTC LTR MaLR 0 421 1 7 1488 3578 249 112 45 chr1 118427568 118428071 -78767361 - MTC-int LTR MaLR 0 1258 730 7 1488 1118 76 0 0 chr1 118428071 118428215 -78767217 + B1_Mus2 SINE Alu 2 145 -2 7 1488 3578 249 112 45 chr1 118428215 118428882 -78766550 - MTC-int LTR MaLR -529 729 11 7 1488 1541 281 27 15 chr1 118428878 118429283 -78766149 - MTC LTR MaLR -11 410 1 7 1488 307 192 0 0 chr1 118429525 118429577 -78765855 - B1_Mus2 SINE Alu -52 95 44 7 1488 249 319 14 0 chr1 118429562 118429631 -78765801 + ID_B1 SINE B4 155 224 0 7 1488 270 0 0 0 chr1 118430281 118430311 -78765121 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1488 9079 15 2 0 chr1 118430326 118432054 -78763378 - L1Md_A LINE L1 0 6582 4851 7 1488 1051 111 0 0 chr1 118432054 118432198 -78763234 - B1_Mus1 SINE Alu -3 145 2 7 1488 219 403 0 0 chr1 118432353 118432425 -78763007 - B3 SINE B2 -144 72 1 7 1488 342 326 161 10 chr1 118432795 118432987 -78762445 + B4A SINE B4 3 223 -69 7 1488 569 326 39 0 chr1 118432991 118433172 -78762260 + B3A SINE B2 11 198 0 7 1488 729 161 0 0 chr1 118433273 118433444 -78761988 + (TATATG)n Simple_repeat Simple_repeat 1 171 0 7 1488 214 143 0 45 chr1 118433481 118433525 -78761907 + (CAGA)n Simple_repeat Simple_repeat 4 45 0 7 1488 384 22 0 0 chr1 118433525 118433570 -78761862 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1488 229 287 75 56 chr1 118433626 118433733 -78761699 - MIRb SINE MIR -131 137 29 7 1488 513 68 0 0 chr1 118434427 118434501 -78760931 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 1488 555 330 24 48 chr1 118434509 118434719 -78760713 + ID_B1 SINE B4 20 224 0 7 1488 225 301 90 18 chr1 118434928 118435094 -78760338 + RLTR21 LTR ERVK 1071 1248 -324 7 1488 1215 299 45 8 chr1 118435324 118435678 -78759754 + MTEa LTR MaLR 11 377 -2 7 1488 273 220 0 0 chr1 118435679 118435738 -78759694 + MIR SINE MIR 106 164 -98 7 1488 1219 285 43 6 chr1 118436161 118436507 -78758925 - MTEa LTR MaLR 0 379 21 7 1488 845 328 78 27 chr1 118436834 118437166 -78758266 - ORR1E LTR MaLR -6 353 5 7 1488 236 231 10 0 chr1 118437987 118438091 -78757341 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1488 306 0 0 0 chr1 118438277 118438311 -78757121 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 1488 438 20 0 0 chr1 118438728 118438779 -78756653 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1488 442 179 6 62 chr1 118438856 118439035 -78756397 + T-rich Low_complexity Low_complexity 3 171 0 7 1488 421 328 16 8 chr1 118439048 118439174 -78756258 - B4A SINE B4 -163 129 3 7 1488 246 32 0 0 chr1 118439370 118439401 -78756031 + (CAA)n Simple_repeat Simple_repeat 2 32 0 7 1488 406 352 100 63 chr1 118439652 118439922 -78755510 + B4 SINE B4 2 281 -11 7 1488 654 37 0 0 chr1 118439956 118440037 -78755395 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1488 3831 117 2 9 chr1 118440392 118440962 -78754470 - Lx3A LINE L1 -12 6969 6404 7 1488 3267 128 17 21 chr1 118440962 118441497 -78753935 + Lx3A LINE L1 5874 6406 -575 7 1488 891 321 36 72 chr1 118441828 118442190 -78753242 + MTE2a LTR MaLR 31 379 0 7 1488 24667 170 16 51 chr1 118442195 118444171 -78751261 + L1_Mus1 LINE L1 562 2483 -3400 7 1488 2815 28 5 58 chr1 118444171 118444548 -78750884 + L1Md_A LINE L1 6225 6581 -1 7 1488 24667 144 8 24 chr1 118444548 118448723 -78746709 + L1_Mus1 LINE L1 2484 6563 -4 7 1488 1533 76 112 8 chr1 118448730 118448970 -78746462 + L1_Mus3 LINE L1 6374 6638 0 7 1488 365 365 109 16 chr1 118449123 118449315 -78746117 - B4 SINE B4 -80 212 3 7 1488 277 24 48 0 chr1 118449329 118449371 -78746061 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1488 396 252 9 36 chr1 118449391 118449502 -78745930 + ORR1B1 LTR MaLR 30 137 -257 7 1488 479 165 11 32 chr1 118450289 118450383 -78745049 + ORR1A4 LTR MaLR 1 92 -234 7 1488 926 125 7 13 chr1 118450363 118450517 -78744915 + ORR1A4-int LTR MaLR 1811 1963 0 7 1488 1455 137 134 66 chr1 118450517 118450822 -78744610 + ORR1A4 LTR MaLR 1 326 -3 7 1488 180 125 0 0 chr1 118451251 118451283 -78744149 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1488 277 369 31 45 chr1 118451307 118451594 -78743838 - B4A SINE B4 -8 284 2 7 1488 181 270 0 31 chr1 118451942 118452007 -78743425 - MIRb SINE MIR -18 250 188 7 1488 655 322 49 19 chr1 118452531 118452797 -78742635 - B4 SINE B4 -18 274 1 7 1488 1060 108 0 0 chr1 118453476 118453624 -78741808 + B1_Mus1 SINE Alu 1 148 0 7 1488 267 103 0 0 chr1 118453624 118453663 -78741769 + (TAAG)n Simple_repeat Simple_repeat 1 39 0 7 1488 355 299 7 5 chr1 118454343 118454449 -78740983 + B4A SINE B4 5 111 -181 7 1488 482 342 76 25 chr1 118454839 118455115 -78740317 - B4A SINE B4 -2 290 1 7 1488 1201 197 75 19 chr1 118455936 118456257 -78739175 - Lx9 LINE L1 -22 7622 7284 7 1488 436 115 5 17 chr1 118456259 118456350 -78739082 + ORR1A4 LTR MaLR 1 119 -275 7 1488 557 364 93 0 chr1 118456344 118456624 -78738808 - Charlie1a DNA MER1_type -1114 341 36 7 1488 204 267 51 39 chr1 118456788 118456866 -78738566 - L2a LINE L2 -1 3425 3347 7 1488 1787 153 11 7 chr1 118457190 118457473 -78737959 + ORR1A3 LTR MaLR 43 326 0 7 1488 301 217 58 0 chr1 118457486 118457555 -78737877 - Lx9 LINE L1 -365 7279 7207 7 1488 22 0 0 0 chr1 118457936 118457958 -78737474 + AT_rich Low_complexity Low_complexity 1 22 0 7 1488 230 258 76 0 chr1 118458029 118458095 -78737337 + Lx8 LINE L1 7213 7283 -190 8 1488 482 164 0 8 chr1 118458243 118458366 -78737066 + CT-rich Low_complexity Low_complexity 1 122 0 8 1488 320 152 149 15 chr1 118458391 118458458 -78736974 - Lx3B LINE L1 -752 6221 6146 8 1488 493 319 81 77 chr1 118458504 118458725 -78736707 - B4A SINE B4 -18 274 53 8 1488 423 416 30 15 chr1 118460164 118460435 -78734997 - B4A SINE B4 -15 277 3 8 1488 265 250 100 0 chr1 118460436 118460516 -78734916 + L1MA8 LINE L1 6178 6265 -26 8 1488 441 71 30 0 chr1 118460801 118460875 -78734557 - L1_Mus3 LINE L1 -175 6463 6360 8 1488 1129 105 16 6 chr1 118460875 118461057 -78734375 + L1_Mus3 LINE L1 6448 6631 -7 8 1488 23 54 0 0 chr1 118461604 118461641 -78733791 + AT_rich Low_complexity Low_complexity 1 37 0 8 1488 297 397 53 55 chr1 118462688 118463067 -78732365 + MLT1D LTR MaLR 128 505 0 8 1488 430 287 114 95 chr1 118463170 118463328 -78732104 + B3A SINE B2 6 166 -32 8 1488 351 0 0 0 chr1 118463346 118463385 -78732047 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1488 22 56 0 0 chr1 118463578 118463614 -78731818 + AT_rich Low_complexity Low_complexity 1 36 0 8 1488 387 0 0 0 chr1 118463905 118463948 -78731484 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1488 5732 188 33 87 chr1 118464062 118465729 -78729703 - Lx5 LINE L1 -82 6968 5394 8 1488 1839 188 91 4 chr1 118465726 118465784 -78729648 - L1_Mur2 LINE L1 -4171 1706 1649 8 1488 315 0 0 0 chr1 118465784 118465819 -78729613 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 8 1488 1839 199 61 18 chr1 118465819 118466599 -78728833 - L1_Mur2 LINE L1 -4229 1648 835 8 1488 971 276 73 61 chr1 118468369 118468639 -78726793 - MTE2b LTR MaLR -2 398 95 8 1488 3165 58 2 0 chr1 118468639 118469035 -78726397 + L1_Mus1 LINE L1 6169 6565 -2 8 1488 971 280 61 89 chr1 118469035 118469148 -78726284 - MTE2b LTR MaLR -285 94 1 8 1488 24 32 0 0 chr1 118469225 118469256 -78726176 + AT_rich Low_complexity Low_complexity 1 31 0 8 1488 648 361 71 8 chr1 118469666 118469920 -78725512 + B4A SINE B4 6 275 -17 8 1488 469 221 70 102 chr1 118470202 118470485 -78724947 - L1MA8 LINE L1 -349 5942 5680 8 1488 395 330 89 37 chr1 118470488 118471061 -78724371 + L1M3 LINE L1 4707 5309 -831 8 1488 1076 89 7 0 chr1 118471166 118471312 -78724120 - B1_Mus2 SINE Alu 0 147 1 8 1488 224 100 25 0 chr1 118471390 118471430 -78724002 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1488 215 103 26 0 chr1 118471443 118471482 -78723950 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 8 1488 310 383 96 29 chr1 118471517 118471829 -78723603 - MER74B LTR ERVL -146 476 144 8 1488 1359 308 88 22 chr1 118471836 118472337 -78723095 - RMER15 LTR ERVL -3 572 39 8 1488 207 0 0 0 chr1 118472699 118472722 -78722710 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1488 22 0 0 0 chr1 118472769 118472791 -78722641 + AT_rich Low_complexity Low_complexity 1 22 0 8 1488 183 242 0 0 chr1 118473243 118473305 -78722127 + CT-rich Low_complexity Low_complexity 3 64 0 8 1488 281 360 0 25 chr1 118473368 118473630 -78721802 + CT-rich Low_complexity Low_complexity 1 255 0 8 1488 304 288 0 0 chr1 118473644 118473724 -78721708 + ID_B1 SINE B4 145 224 0 8 1488 297 0 0 0 chr1 118474092 118474125 -78721307 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 1488 238 303 39 13 chr1 118474220 118474297 -78721135 - B4 SINE B4 -171 121 43 8 1488 261 0 0 0 chr1 118476183 118476212 -78719220 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1488 412 95 132 0 chr1 118476212 118476288 -78719144 - B1_Mus2 SINE Alu 0 150 62 8 1488 228 243 96 41 chr1 118476430 118476503 -78718929 + B4 SINE B4 200 276 -16 8 1488 390 74 0 0 chr1 118476526 118476580 -78718852 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1488 264 127 24 48 chr1 118476588 118476671 -78718761 + (CAGAGA)n Simple_repeat Simple_repeat 1 81 0 8 1488 396 0 0 0 chr1 118477696 118477740 -78717692 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1488 378 0 0 0 chr1 118477903 118477945 -78717487 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1488 351 0 0 0 chr1 118478622 118478661 -78716771 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 1488 258 106 0 0 chr1 118481776 118481823 -78713609 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 8 1488 189 0 0 0 chr1 118482873 118482894 -78712538 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1488 222 37 0 0 chr1 118483579 118483606 -78711826 + (TTA)n Simple_repeat Simple_repeat 1 27 0 8 1488 498 304 30 124 chr1 118484419 118484573 -78710859 + ID_B1 SINE B4 3 149 -75 8 1488 1610 162 38 77 chr1 118484573 118484803 -78710629 - RMER17C LTR ERVK 0 410 186 8 1488 369 0 0 0 chr1 118484803 118484844 -78710588 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1488 252 0 0 0 chr1 118484844 118484871 -78710561 + (GA)n Simple_repeat Simple_repeat 2 29 0 8 1488 1610 162 38 77 chr1 118484871 118485066 -78710366 - RMER17C LTR ERVK -225 185 2 8 1488 498 304 30 124 chr1 118485066 118485088 -78710344 + ID_B1 SINE B4 150 166 -58 8 1488 7482 6 0 0 chr1 118485088 118485918 -78709514 + L1Md_T LINE L1 5753 6582 0 8 1488 498 304 30 124 chr1 118485918 118485973 -78709459 + ID_B1 SINE B4 167 213 -11 8 1488 180 77 0 0 chr1 118485974 118486000 -78709432 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 8 1488 303 0 64 0 chr1 118486224 118486271 -78709161 + (CAA)n Simple_repeat Simple_repeat 2 51 0 8 1488 1685 168 28 79 chr1 118486481 118486861 -78708571 + RMER17C LTR ERVK 1 366 -44 8 1488 3202 48 5 5 chr1 118486861 118487257 -78708175 + MTA_Mm LTR MaLR 1 396 0 8 1488 1685 168 28 79 chr1 118487257 118487304 -78708128 + RMER17C LTR ERVK 367 406 -4 8 1488 454 291 161 39 chr1 118487586 118487840 -78707592 - B4A SINE B4 -6 286 2 8 1488 25 31 0 0 chr1 118488061 118488093 -78707339 + AT_rich Low_complexity Low_complexity 1 32 0 8 1488 203 347 14 0 chr1 118488427 118488499 -78706933 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 1488 285 346 106 33 chr1 118488753 118489069 -78706363 - RLTR11A LTR ERVK -280 412 117 8 1489 926 159 154 0 chr1 118489206 118489401 -78706031 - URR1A DNA MER1_type 0 226 2 8 1489 250 222 0 36 chr1 118489549 118489605 -78705827 - MLT1B LTR MaLR -64 326 273 8 1489 790 308 5 25 chr1 118489632 118489832 -78705600 + ID_B1 SINE B4 27 222 -2 8 1489 191 81 0 51 chr1 118489958 118489997 -78705435 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 8 1489 763 187 0 41 chr1 118490013 118490158 -78705274 - B1_Mur4 SINE Alu -6 144 6 8 1489 434 267 112 52 chr1 118490756 118490989 -78704443 + L1MB3 LINE L1 5914 6160 -11 8 1489 300 152 38 124 chr1 118491050 118491155 -78704277 + RLTR33 LTR ERVK 582 677 -1 8 1489 1085 179 21 82 chr1 118491762 118492005 -78703427 - ORR1A4 LTR MaLR -101 228 1 8 1489 504 315 60 33 chr1 118492150 118492525 -78702907 - L1MA4 LINE L1 -308 5995 5616 8 1489 1512 225 47 56 chr1 118492641 118493084 -78702348 + RMER10A LTR ERVL 4 442 0 8 1489 797 336 107 53 chr1 118495303 118495869 -78699563 - Lx2A1 LINE L1 -17 7443 6480 8 1489 6870 239 54 27 chr1 118495867 118497045 -78698387 - Lx2A1 LINE L1 -687 6363 5069 8 1489 2603 115 43 5 chr1 118497045 118497437 -78697995 - MTB_Mm LTR MaLR 0 407 1 8 1489 6870 217 20 37 chr1 118497437 118497662 -78697770 - Lx2A1 LINE L1 -809 5068 4849 8 1489 261 57 0 0 chr1 118497662 118497697 -78697735 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1489 6870 217 20 37 chr1 118497697 118498448 -78696984 - Lx2A1 LINE L1 -1029 4848 4140 8 1489 259 339 34 56 chr1 118498665 118498843 -78696589 - RLTR15 LTR ERVK -138 221 48 8 1489 201 39 0 0 chr1 118499034 118499060 -78696372 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1489 731 161 0 7 chr1 118499858 118499996 -78695436 + CT-rich Low_complexity Low_complexity 3 139 0 8 1489 554 75 0 12 chr1 118500000 118500081 -78695351 + (TTC)n Simple_repeat Simple_repeat 2 81 0 1 1489 838 125 73 7 chr1 118500081 118500218 -78695214 - B1_Mus1 SINE Alu 0 148 3 2 1489 763 257 104 14 chr1 118500220 118500441 -78694991 + RMER15 LTR ERVL 330 570 -5 3 1489 3911 227 61 67 chr1 118500575 118500979 -78694453 + RLTR25A LTR ERVK 7 397 -706 4 1489 270 0 43 43 chr1 118500979 118501026 -78694406 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1489 3911 227 61 67 chr1 118501026 118501725 -78693707 + RLTR25A LTR ERVK 398 1103 0 4 1489 260 299 14 36 chr1 118502024 118502163 -78693269 - Ricksha_c DNA MuDR -1558 490 355 6 1489 195 49 73 0 chr1 118502172 118502213 -78693219 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1489 634 328 54 29 chr1 118502653 118502929 -78692503 + B4A SINE B4 6 288 -4 8 1489 349 253 0 0 chr1 118503037 118503112 -78692320 + B1_Mur4 SINE Alu 25 99 -51 9 1489 435 68 0 0 chr1 118503133 118503192 -78692240 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 1489 1366 280 56 14 chr1 118503833 118504188 -78691244 - ORR1D2 LTR MaLR 0 370 1 1 1489 2703 157 12 2 chr1 118504802 118505293 -78690139 - Lx4A LINE L1 -961 6097 5602 1 1489 3796 160 59 0 chr1 118505284 118505995 -78689437 + Lx4A LINE L1 6089 6841 -217 1 1489 1481 239 119 62 chr1 118506006 118506519 -78688913 + RLTR20B3 LTR ERVK 23 564 -13 1 1489 888 198 0 59 chr1 118506524 118506744 -78688688 + Lx4A LINE L1 6841 7047 -11 1 1489 29 28 0 0 chr1 118506747 118506783 -78688649 + AT_rich Low_complexity Low_complexity 1 36 0 1 1489 223 250 31 0 chr1 118507034 118507098 -78688334 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 1 1489 245 356 77 77 chr1 118507142 118507285 -78688147 - B4A SINE B4 -143 149 7 1 1489 931 305 113 19 chr1 118507979 118508441 -78686991 + Lx7 LINE L1 6860 7364 -332 1 1489 22 0 0 0 chr1 118508441 118508463 -78686969 + AT_rich Low_complexity Low_complexity 1 22 0 1 1489 1798 186 20 75 chr1 118508577 118508859 -78686573 - ORR1C1 LTR MaLR 0 378 112 1 1489 3666 126 25 84 chr1 118508859 118509198 -78686234 - RMER17A LTR ERVK 0 751 411 2 1489 1080 0 0 0 chr1 118509198 118509318 -78686114 + (GGAGA)n Simple_repeat Simple_repeat 2 121 0 2 1489 3666 126 25 84 chr1 118509318 118509773 -78685659 - RMER17A LTR ERVK -341 410 4 2 1489 1798 186 20 75 chr1 118509773 118509890 -78685542 - ORR1C1 LTR MaLR -267 111 1 1 1489 42 48 0 0 chr1 118509890 118509953 -78685479 + AT_rich Low_complexity Low_complexity 1 63 0 2 1489 220 140 0 23 chr1 118510304 118510348 -78685084 + T-rich Low_complexity Low_complexity 2 44 0 2 1489 366 316 211 12 chr1 118510778 118511025 -78684407 - RMER15 LTR ERVL -14 561 266 2 1489 472 349 8 45 chr1 118512783 118512809 -78682623 - RSINE1 SINE B4 -3 162 137 2 1489 461 47 16 0 chr1 118512809 118512873 -78682559 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1489 472 349 8 45 chr1 118512873 118512978 -78682454 - RSINE1 SINE B4 -29 136 36 2 1489 287 221 62 71 chr1 118513304 118513416 -78682016 + MIR3 SINE MIR 93 203 -5 2 1489 562 256 17 46 chr1 118513715 118513914 -78681518 - Lx6 LINE L1 -26 7434 7261 2 1489 539 329 0 18 chr1 118513931 118514095 -78681337 - B3A SINE B2 -37 161 1 2 1489 187 389 20 27 chr1 118514311 118514459 -78680973 - MIRb SINE MIR -96 172 26 3 1489 223 96 39 0 chr1 118515048 118515100 -78680332 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 3 1489 294 342 45 39 chr1 118515611 118515766 -78679666 + RSINE1 SINE B4 4 159 -6 3 1489 3216 134 138 0 chr1 118516443 118517001 -78678431 + RLTR33 LTR ERVK 1 635 -43 3 1489 288 0 0 0 chr1 118517047 118517079 -78678353 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 1489 8719 115 17 6 chr1 118517081 118518150 -78677282 - Lx3_Mus LINE L1 -17 6992 5911 3 1489 288 0 0 0 chr1 118518150 118518182 -78677250 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1489 27393 109 24 26 chr1 118518182 118519349 -78676083 - Lx3_Mus LINE L1 -1099 5910 4740 3 1489 325 0 0 43 chr1 118519349 118519396 -78676036 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1489 27393 109 24 27 chr1 118519396 118520735 -78674697 - Lx3_Mus LINE L1 -1147 4739 3506 3 1489 357 24 0 0 chr1 118520735 118520777 -78674655 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3 1489 27393 121 46 27 chr1 118520777 118523640 -78671792 - Lx3_Mus LINE L1 -2381 3505 211 3 1489 261 0 0 0 chr1 118523717 118523746 -78671686 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1489 204 139 28 0 chr1 118523746 118523782 -78671650 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1489 605 310 129 30 chr1 118523785 118524048 -78671384 - B4A SINE B4 -2 290 2 4 1489 741 87 0 0 chr1 118524774 118524889 -78670543 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 1489 711 35 0 0 chr1 118524889 118524974 -78670458 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1489 281 360 112 0 chr1 118525122 118525247 -78670185 + RSINE1 SINE B4 27 165 0 4 1489 252 0 0 0 chr1 118525255 118525283 -78670149 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1489 22 94 0 0 chr1 118527200 118527264 -78668168 + AT_rich Low_complexity Low_complexity 1 64 0 4 1489 1885 112 89 13 chr1 118527690 118528005 -78667427 - L1_Mus3 LINE L1 -2 6636 6298 4 1489 10298 110 21 13 chr1 118528124 118529052 -78666380 - MusHAL1 LINE L1 -632 2080 1155 4 1489 408 40 0 0 chr1 118529052 118529102 -78666330 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1489 10298 110 21 13 chr1 118529102 118529957 -78665475 - MusHAL1 LINE L1 -1558 1154 284 4 1489 996 96 90 0 chr1 118529956 118530122 -78665310 - L1VL2 LINE L1 -5454 881 701 5 1489 306 182 0 0 chr1 118530610 118530676 -78664756 + (ATG)n Simple_repeat Simple_repeat 3 68 0 5 1489 1697 228 22 22 chr1 118530840 118531199 -78664233 + RMER19C LTR ERVK 253 611 0 5 1489 601 314 75 41 chr1 118531217 118531483 -78663949 - MT2A LTR ERVL -118 415 141 5 1489 3711 42 2 0 chr1 118531663 118532139 -78663293 + L1Md_T LINE L1 5110 5586 -297 5 1489 8316 39 0 1 chr1 118532140 118533132 -78662300 + L1Md_T LINE L1 5588 6578 -4 5 1489 22 0 0 0 chr1 118533889 118533911 -78661521 + AT_rich Low_complexity Low_complexity 1 22 0 5 1489 301 312 41 59 chr1 118535172 118535342 -78660090 + RMER15 LTR ERVL 394 560 -15 5 1489 273 297 84 28 chr1 118535922 118536071 -78659361 + MTD LTR MaLR 1 146 -273 5 1489 660 262 68 23 chr1 118536076 118536223 -78659209 + MT2A LTR ERVL 298 440 -93 5 1489 2605 114 18 140 chr1 118536223 118536772 -78658660 - RLTR45 LTR ERVK 0 482 1 5 1489 660 262 68 23 chr1 118536772 118536843 -78658589 + MT2A LTR ERVL 441 525 -8 5 1489 21 0 0 0 chr1 118536864 118536885 -78658547 + AT_rich Low_complexity Low_complexity 1 21 0 6 1489 500 345 21 0 chr1 118536919 118537064 -78658368 - RSINE1 SINE B4 -15 150 3 6 1489 22 0 0 0 chr1 118537488 118537510 -78657922 + AT_rich Low_complexity Low_complexity 1 22 0 6 1489 1160 281 25 72 chr1 118537631 118538044 -78657388 - Lx9 LINE L1 -106 7538 7151 6 1489 5973 75 23 5 chr1 118538044 118538836 -78656596 - RLTR13C2 LTR ERVK -2 806 1 6 1489 1160 281 25 72 chr1 118538836 118538909 -78656523 - Lx9 LINE L1 -494 7150 7076 6 1489 24 53 0 0 chr1 118539122 118539160 -78656272 + AT_rich Low_complexity Low_complexity 1 38 0 6 1489 786 299 57 110 chr1 118539680 118539981 -78655451 + B4 SINE B4 7 291 -1 6 1489 459 0 0 0 chr1 118540022 118540073 -78655359 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 6 1489 27 29 0 0 chr1 118540231 118540265 -78655167 + AT_rich Low_complexity Low_complexity 1 34 0 6 1489 1148 272 89 50 chr1 118540276 118540446 -78654986 + ORR1D1 LTR MaLR 1 164 -210 6 1489 627 14 0 0 chr1 118540446 118540518 -78654914 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1489 1148 272 89 50 chr1 118540518 118540707 -78654725 + ORR1D1 LTR MaLR 165 374 0 6 1489 1427 292 92 38 chr1 118540918 118541569 -78653863 - Lx9 LINE L1 -274 7370 6685 7 1489 231 208 40 8 chr1 118541572 118541698 -78653734 + (TA)n Simple_repeat Simple_repeat 2 131 0 7 1489 226 291 0 0 chr1 118541716 118541795 -78653637 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1489 533 127 36 9 chr1 118542012 118542123 -78653309 + Lx LINE L1 6541 6654 0 7 1489 5877 107 23 1 chr1 118542913 118543780 -78651652 + L1_Mus3 LINE L1 5745 6630 -8 7 1489 1747 215 38 40 chr1 118544197 118544671 -78650761 - RMER1B Other Other -13 1053 581 7 1489 3150 8 11 6 chr1 118544842 118545207 -78650225 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1489 52875 22 13 5 chr1 118545207 118551580 -78643852 - IAPEz-int LTR ERVK 0 6481 57 7 1489 451 269 7 72 chr1 118551581 118551604 -78643828 - RLTR33 LTR ERVK -90 588 566 7 1489 3150 8 11 6 chr1 118551604 118551969 -78643463 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1489 451 269 7 72 chr1 118551969 118552097 -78643335 - RLTR33 LTR ERVK -113 565 448 7 1489 1323 196 219 26 chr1 118552384 118552767 -78642665 + RMER6B LTR ERVK 1 457 -4 7 1489 591 88 0 0 chr1 118552799 118552890 -78642542 + (TA)n Simple_repeat Simple_repeat 1 91 0 8 1489 702 371 14 48 chr1 118552986 118553280 -78642152 + B4A SINE B4 9 292 0 8 1489 734 252 113 31 chr1 118553668 118553987 -78641445 + MT2B LTR ERVL 94 575 -26 8 1489 758 41 10 0 chr1 118554462 118554560 -78640872 + (GGA)n Simple_repeat Simple_repeat 2 100 0 8 1489 344 291 123 25 chr1 118555108 118555351 -78640081 + MER2 DNA MER2_type 8 274 -71 8 1489 490 254 83 21 chr1 118555736 118555881 -78639551 + MTE2a LTR MaLR 40 193 -186 8 1489 280 79 137 10 chr1 118555884 118555986 -78639446 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 8 1489 348 267 13 0 chr1 118556740 118556815 -78638617 - ID4 SINE ID -6 77 2 8 1489 722 305 58 85 chr1 118556941 118557271 -78638161 - MTD LTR MaLR -98 321 1 8 1489 3173 53 58 7 chr1 118557772 118558187 -78637245 - RLTR10C LTR ERVK 0 436 1 8 1489 42752 34 1 11 chr1 118558187 118563268 -78632164 - MMERVK10C-int LTR ERVK 0 7581 2552 8 1489 401 117 6 58 chr1 118563274 118563402 -78632030 - MMERVK10C-int LTR ERVK -5634 1947 1721 8 1489 349 240 120 30 chr1 118563402 118563535 -78631897 - MMERVK10C-int LTR ERVK -5469 668 524 8 1489 670 204 90 52 chr1 118563530 118563772 -78631660 - RMER16-int LTR ERVK -4956 450 312 9 1489 622 183 32 67 chr1 118563861 118564144 -78631288 - MMERVK10C-int LTR ERVK -6629 952 729 9 1489 2742 55 0 3 chr1 118564142 118564486 -78630946 - MMERVK10C-int LTR ERVK -7238 343 1 9 1489 3552 28 28 7 chr1 118564486 118564913 -78630519 - RLTR10C LTR ERVK 0 436 1 9 1489 246 292 146 25 chr1 118564918 118565076 -78630356 + RMER15 LTR ERVL 386 562 -13 9 1489 271 261 63 51 chr1 118565444 118565605 -78629827 + MTE2a LTR MaLR 194 375 -4 8 1489 191 372 132 0 chr1 118566689 118566810 -78628622 + MER5B DNA MER1_type 42 178 0 9 1489 448 311 161 43 chr1 118567283 118567538 -78627894 + B4A SINE B4 1 285 -7 9 1489 567 108 0 0 chr1 118567673 118567775 -78627657 + (TC)n Simple_repeat Simple_repeat 1 102 0 9 1489 276 77 0 0 chr1 118567775 118567814 -78627618 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1489 255 31 0 0 chr1 118568990 118569022 -78626410 + (TTTTTG)n Simple_repeat Simple_repeat 6 37 0 9 1489 243 88 0 0 chr1 118569223 118569257 -78626175 + (CAT)n Simple_repeat Simple_repeat 2 35 0 9 1489 218 81 27 0 chr1 118569353 118569390 -78626042 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 9 1489 944 109 0 0 chr1 118569398 118569535 -78625897 - B1_Mus2 SINE Alu 0 147 11 1 1489 1859 306 16 12 chr1 118570196 118570768 -78624664 - Lx7 LINE L1 -502 7194 6621 1 1489 564 15 0 0 chr1 118571007 118571072 -78624360 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1489 373 321 129 52 chr1 118571111 118571344 -78624088 - B4A SINE B4 0 292 42 1 1489 13064 189 62 24 chr1 118571505 118574084 -78621348 + L1VL4 LINE L1 727 3381 -2505 1 1489 4880 79 3 6 chr1 118574084 118574746 -78620686 - L1_Mus1 LINE L1 0 6567 5908 1 1489 13064 207 64 19 chr1 118574746 118576149 -78619283 + L1VL4 LINE L1 3382 4867 -1019 1 1489 2934 135 34 4 chr1 118576159 118576636 -78618796 + Lx LINE L1 5758 6248 -406 1 1489 2910 143 6 2 chr1 118576631 118577106 -78618326 - L1_Mm LINE L1 -133 5750 5274 1 1489 318 340 125 45 chr1 118577252 118577452 -78617980 + B3 SINE B2 1 216 0 1 1489 450 258 7 101 chr1 118577712 118577854 -78617578 + B3 SINE B2 72 216 0 1 1489 3105 56 119 2 chr1 118577951 118578381 -78617051 - L1Md_F3 LINE L1 0 6584 6105 1 1489 2382 211 35 18 chr1 118578428 118578993 -78616439 - RMER15 LTR ERVL 0 575 1 1 1489 1236 253 44 44 chr1 118579169 118579529 -78615903 - RMER15-int LTR ERVL -235 4764 4405 1 1489 1151 208 37 34 chr1 118579529 118579798 -78615634 + RMER15 LTR ERVL 304 573 -2 1 1489 1500 304 43 42 chr1 118579966 118581115 -78614317 + L1M2 LINE L1 4326 5451 -429 1 1489 1693 189 25 0 chr1 118581122 118581440 -78613992 - ORR1A3 LTR MaLR 0 326 1 1 1489 1165 314 43 62 chr1 118581455 118582196 -78613236 + Lx9 LINE L1 6797 7523 -121 1 1489 490 67 27 0 chr1 118582196 118582271 -78613161 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1489 389 103 0 0 chr1 118582320 118582378 -78613054 + Lx LINE L1 6583 6640 -14 1 1489 7768 116 151 18 chr1 118582391 118584824 -78610608 + L1VL1 LINE L1 184 2934 -764 1 1489 6195 105 4 34 chr1 118584817 118585769 -78609663 + L1_Mus2 LINE L1 5643 6566 0 1 1489 1328 233 110 18 chr1 118585998 118586335 -78609097 - ORR1D1 LTR MaLR 0 374 7 1 1489 575 358 28 0 chr1 118586387 118586602 -78608830 - ID_B1 SINE B4 -2 222 2 1 1489 369 0 0 0 chr1 118587437 118587478 -78607954 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1489 234 364 43 43 chr1 118587726 118587864 -78607568 - MLT1N2 LTR MaLR -278 284 147 1 1489 5086 159 13 14 chr1 118588208 118589102 -78606330 + Lx2 LINE L1 6018 6910 -87 1 1489 357 24 0 0 chr1 118589184 118589226 -78606206 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1489 294 29 0 0 chr1 118589226 118589260 -78606172 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1489 328 299 13 13 chr1 118589313 118589391 -78606041 - RSINE1 SINE B4 -86 79 2 1 1489 2450 208 24 24 chr1 118589455 118589963 -78605469 - RMER20A LTR ERVK -6 510 3 1 1489 334 333 8 42 chr1 118590051 118590170 -78605262 + RSINE1 SINE B4 10 124 -41 1 1489 22 0 0 0 chr1 118591004 118591026 -78604406 + AT_rich Low_complexity Low_complexity 1 22 0 1 1489 324 0 0 0 chr1 118591249 118591285 -78604147 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1489 369 0 0 0 chr1 118591285 118591325 -78604107 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1489 414 0 0 0 chr1 118591325 118591370 -78604062 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1489 222 37 0 0 chr1 118591374 118591401 -78604031 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 1 1489 596 356 4 100 chr1 118591431 118591702 -78603730 - B4A SINE B4 -19 273 29 1 1489 591 180 20 0 chr1 118592084 118592234 -78603198 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1489 7610 167 34 8 chr1 118593172 118594845 -78600587 - Lx2 LINE L1 0 6997 5279 1 1489 9624 154 55 44 chr1 118594837 118595553 -78599879 - L1VL2 LINE L1 -580 3035 2393 1 1489 309 26 0 0 chr1 118595553 118595591 -78599841 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1489 486 0 0 0 chr1 118595591 118595644 -78599788 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1489 9624 164 89 30 chr1 118595644 118597744 -78597688 - L1VL2 LINE L1 -1223 2392 65 1 1489 324 0 0 0 chr1 118597790 118597826 -78597606 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1489 2842 46 0 3 chr1 118598034 118598381 -78597051 + ORR1A0 LTR MaLR 1 346 0 1 1489 13615 59 14 1 chr1 118598381 118600150 -78595282 + ORR1A0-int LTR MaLR 1 1792 0 1 1489 2944 38 0 0 chr1 118600150 118600496 -78594936 + ORR1A0 LTR MaLR 1 346 0 1 1489 314 286 24 0 chr1 118600496 118600580 -78594852 + B4A SINE B4 205 290 -2 1 1489 713 277 45 42 chr1 118601574 118601909 -78593523 + L1_Rod LINE L1 5501 5836 -11 1 1489 7051 107 19 0 chr1 118602186 118603350 -78592082 - L1_Mus3 LINE L1 -6 6632 5447 1 1489 434 122 154 11 chr1 118603344 118603435 -78591997 - L1Md_F2 LINE L1 -11 6571 6468 1 1489 244 239 15 0 chr1 118603449 118603516 -78591916 + RMER6A LTR ERVK 353 420 -336 1 1489 386 183 0 0 chr1 118603539 118603610 -78591822 + L1_Mur1 LINE L1 680 750 -6232 1 1489 3220 294 72 47 chr1 118603685 118604039 -78591393 + L1_Mur1 LINE L1 518 756 -6228 1 1489 887 152 0 0 chr1 118604039 118604177 -78591255 + B1_Mus1 SINE Alu 2 139 -9 1 1489 9448 182 35 12 chr1 118604177 118606662 -78588770 + L1_Mur1 LINE L1 634 3172 -2714 1 1489 574 225 147 0 chr1 118606749 118606878 -78588554 + ORR1D2 LTR MaLR 2 149 -221 1 1489 403 332 28 131 chr1 118607010 118607482 -78587950 - RLTR12B LTR ERVK -45 483 61 1 1489 213 200 0 0 chr1 118607683 118607723 -78587709 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1489 539 318 47 83 chr1 118608067 118608383 -78587049 + MTE2a LTR MaLR 80 397 -3 1 1489 7204 86 18 0 chr1 118609566 118610693 -78584739 - L1_Mus1 LINE L1 -542 6024 4876 1 1489 4027 88 2 2 chr1 118610693 118611248 -78584184 + L1_Mus1 LINE L1 6010 6564 -3 1 1489 685 328 96 7 chr1 118611941 118612265 -78583167 - ORR1D1 LTR MaLR -9 361 1 1 1489 4389 106 29 4 chr1 118612407 118612854 -78582578 - L1_Mus3 LINE L1 -829 5809 5359 1 1489 4678 30 7 2 chr1 118612854 118613417 -78582015 - L1Md_A LINE L1 0 6582 6017 1 1489 4389 102 28 3 chr1 118613417 118613631 -78581801 - L1_Mus3 LINE L1 -528 5358 5140 1 1489 7286 118 37 9 chr1 118613631 118613741 -78581691 + Lx3_Mus LINE L1 5801 5924 -1085 1 1489 202 73 49 0 chr1 118613741 118613782 -78581650 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 1489 7286 118 37 9 chr1 118613782 118614847 -78580585 + Lx3_Mus LINE L1 5925 7009 0 1 1489 793 74 20 93 chr1 118614890 118615040 -78580392 - L1Md_F2 LINE L1 0 6582 6444 1 1489 761 31 10 0 chr1 118615112 118615208 -78580224 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 1 1489 381 237 157 7 chr1 118615211 118615351 -78580081 + Lx3C LINE L1 6776 6936 -40 1 1489 462 320 96 24 chr1 118615445 118615753 -78579679 - ORR1E LTR MaLR -28 342 1 1 1489 276 30 0 0 chr1 118616155 118616188 -78579244 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1489 363 377 25 15 chr1 118616790 118616992 -78578440 - ID_B1 SINE B4 -2 222 19 1 1489 407 107 0 13 chr1 118617054 118617130 -78578302 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1489 661 315 18 44 chr1 118617310 118617536 -78577896 - B4A SINE B4 -71 221 2 1 1489 1116 144 89 0 chr1 118617553 118617755 -78577677 - Lx2 LINE L1 -3 6994 6775 1 186 10007 176 108 40 chr1 118617752 118621019 -78574413 - Lx2 LINE L1 -360 6637 3032 1 1490 5250 90 65 8 chr1 118621042 118621817 -78573615 + L1_Mus4 LINE L1 5791 6609 -27 1 1490 7940 246 76 42 chr1 118621831 118625324 -78570108 - L1_Mur2 LINE L1 -1447 4430 826 1 1490 215 0 0 62 chr1 118625382 118625414 -78570018 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1490 27 49 0 0 chr1 118625978 118626019 -78569413 + AT_rich Low_complexity Low_complexity 1 41 0 1 1490 3380 207 87 3 chr1 118626019 118626742 -78568690 - Lx4A LINE L1 0 7058 6275 1 1490 3458 66 0 0 chr1 118626743 118627185 -78568247 + L1Md_F2 LINE L1 5145 5586 -297 1 1490 7306 75 10 4 chr1 118627186 118628175 -78567257 + L1Md_F2 LINE L1 5588 6582 0 1 1490 500 0 17 0 chr1 118628187 118628247 -78567185 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 1 1490 2648 196 24 77 chr1 118628247 118628392 -78567040 - Lx4A LINE L1 -769 6289 6152 1 1490 3395 25 5 0 chr1 118628392 118628786 -78566646 + MTA_Mm LTR MaLR 1 396 0 1 1490 2648 196 24 77 chr1 118628786 118629338 -78566094 - Lx4A LINE L1 -907 6151 5629 1 1490 1070 158 0 59 chr1 118629418 118629640 -78565792 - Lx LINE L1 -31 6623 6415 1 1490 853 112 0 0 chr1 118629649 118629765 -78565667 + Lx LINE L1 6098 6213 -441 1 1490 2769 128 11 9 chr1 118630218 118630796 -78564636 + L1VL4 LINE L1 750 1329 -2230 1 1490 5082 56 0 5 chr1 118630796 118631441 -78563991 + L1Md_F3 LINE L1 5927 6568 -16 1 1490 257 310 53 15 chr1 118631441 118631572 -78563860 - RMER17A2 LTR ERVK -524 382 247 1 1490 12443 229 70 17 chr1 118631573 118631804 -78563628 - Lx4A LINE L1 -621 5256 5019 1 1490 1702 164 48 13 chr1 118631804 118632120 -78563312 + ORR1A2 LTR MaLR 1 327 0 1 1490 12443 229 70 17 chr1 118632120 118632502 -78562930 - Lx4A LINE L1 -859 5018 4634 1 1490 279 0 0 0 chr1 118632502 118632533 -78562899 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1490 12443 229 70 17 chr1 118632533 118634069 -78561363 - Lx4A LINE L1 -1244 4633 3051 1 1490 180 77 0 0 chr1 118634069 118634095 -78561337 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1490 12443 229 70 17 chr1 118634095 118634499 -78560933 - Lx4A LINE L1 -2827 3050 2642 1 1490 189 0 0 0 chr1 118634499 118634520 -78560912 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1490 12443 235 66 20 chr1 118634520 118636117 -78559315 - Lx4A LINE L1 -3236 2641 896 1 1490 3228 230 32 0 chr1 118636881 118637572 -78557860 - Lx4A LINE L1 -1 7057 6345 1 1490 10522 112 72 35 chr1 118637567 118637989 -78557443 + L1_Mur1 LINE L1 1533 2005 -3881 1 1490 249 33 0 0 chr1 118637989 118638019 -78557413 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1490 10522 112 72 35 chr1 118638019 118638258 -78557174 + L1_Mur1 LINE L1 2006 2216 -3670 1 1490 1316 110 16 0 chr1 118638258 118638449 -78556983 + B2_Mm2 SINE B2 2 195 0 1 1490 10522 112 72 35 chr1 118638449 118639704 -78555728 + L1_Mur1 LINE L1 2217 3520 -2366 1 1490 1257 66 171 0 chr1 118639704 118639885 -78555547 + L1_Mus2 LINE L1 6354 6565 -1 1 1490 738 189 44 33 chr1 118639922 118639939 -78555493 + Lx3_Mus LINE L1 5892 5908 -1073 1 1490 346 39 39 0 chr1 118639939 118639991 -78555441 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 1 1490 2678 167 4 52 chr1 118639991 118640526 -78554906 + Lx3_Mus LINE L1 5909 6431 -578 1 1490 1385 205 23 14 chr1 118640527 118640874 -78554558 - Lx4A LINE L1 -1084 5974 5625 1 1490 357 314 7 0 chr1 118642373 118642513 -78552919 + MMSAT4 Satellite Satellite 27 167 -1 1 1490 600 228 48 22 chr1 118642563 118643065 -78552367 + MMSAT4 Satellite Satellite 1 514 0 1 1490 709 55 0 0 chr1 118643411 118643502 -78551930 + 4.5SRNA scRNA scRNA 1 91 -3 1 1490 1238 34 0 0 chr1 118643503 118643650 -78551782 + B1_Mus2 SINE Alu 1 147 0 1 1490 243 0 0 0 chr1 118643650 118643677 -78551755 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1490 22 0 0 0 chr1 118643787 118643809 -78551623 + AT_rich Low_complexity Low_complexity 1 22 0 1 1490 522 0 0 0 chr1 118644290 118644348 -78551084 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1490 465 19 0 0 chr1 118644348 118644401 -78551031 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1490 669 256 114 31 chr1 118644696 118645251 -78550181 - L1_Rod LINE L1 -163 5684 5018 2 1490 302 246 23 23 chr1 118645289 118645418 -78550014 + (TA)n Simple_repeat Simple_repeat 2 130 0 2 1490 308 176 21 29 chr1 118645488 118645628 -78549804 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 1490 395 234 8 53 chr1 118645804 118645935 -78549497 - L1_Rod LINE L1 -1594 4253 4129 2 1490 269 289 23 90 chr1 118645964 118646097 -78549335 + MT2A LTR ERVL 230 353 -180 2 1490 907 220 6 6 chr1 118646109 118646278 -78549154 - MTC LTR MaLR -26 395 227 2 1490 1458 126 0 4 chr1 118646279 118646511 -78548921 - L1_Mus4 LINE L1 -7 6629 6399 2 1490 281 193 17 17 chr1 118646583 118646641 -78548791 + L1_Mur1 LINE L1 675 732 -6250 2 1490 1510 230 3 0 chr1 118646794 118647107 -78548325 + L1_Mur1 LINE L1 701 1014 -5968 2 1490 830 242 62 62 chr1 118647109 118647365 -78548067 + RMER13B LTR ERVK 507 762 -146 2 1490 430 404 35 49 chr1 118647371 118647657 -78547775 + B4 SINE B4 7 288 -4 2 1490 203 238 0 0 chr1 118647664 118647706 -78547726 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1490 846 63 24 0 chr1 118647714 118647840 -78547592 + (TC)n Simple_repeat Simple_repeat 1 129 0 2 1490 1335 215 18 4 chr1 118648895 118649171 -78546261 - L1_Mm LINE L1 -102 5781 5502 2 1490 436 103 0 0 chr1 118649166 118649234 -78546198 + L1_Mur1 LINE L1 3695 3762 -2124 2 1490 1123 294 63 9 chr1 118649504 118649854 -78545578 - ORR1D1 LTR MaLR -5 369 1 2 1490 1617 128 14 18 chr1 118650319 118650597 -78544835 + L1_Mus3 LINE L1 6350 6626 -12 2 1490 207 260 0 0 chr1 118650752 118650802 -78544630 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1490 555 323 30 25 chr1 118651378 118651575 -78543857 - ID_B1 SINE B4 -3 221 24 2 1490 351 0 0 0 chr1 118651591 118651630 -78543802 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1490 454 379 9 39 chr1 118651903 118652136 -78543296 - B4A SINE B4 -63 229 4 2 1490 5864 209 72 18 chr1 118652766 118654052 -78541380 + Lx2B LINE L1 5508 6863 -137 2 1490 204 40 0 0 chr1 118654052 118654077 -78541355 + (TGAG)n Simple_repeat Simple_repeat 2 26 0 2 1490 5864 205 77 18 chr1 118654077 118654203 -78541229 + Lx2B LINE L1 6864 6995 -5 2 1490 572 337 66 48 chr1 118654235 118654675 -78540757 - Lx7 LINE L1 -986 6710 6263 2 1490 32319 93 14 5 chr1 118654723 118660637 -78534795 - L1Md_F2 LINE L1 -1 6581 608 2 1490 23 0 0 0 chr1 118660669 118660692 -78534740 + AT_rich Low_complexity Low_complexity 1 23 0 2 1490 365 264 9 0 chr1 118661266 118661372 -78534060 + L1_Mur2 LINE L1 3435 3541 -2336 2 1490 266 273 193 10 chr1 118661626 118662015 -78533417 + L1_Mur2 LINE L1 3741 4200 -1680 2 1490 216 0 0 0 chr1 118662116 118662140 -78533292 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1490 432 0 0 0 chr1 118662421 118662469 -78532963 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1490 2140 267 16 21 chr1 118662603 118663173 -78532259 - Lx5 LINE L1 -3 7047 6481 2 1490 590 181 31 23 chr1 118663172 118663302 -78532130 - L1VL4 LINE L1 -227 5650 5520 2 1490 1050 224 31 94 chr1 118663302 118663545 -78531887 - RLTR25A LTR ERVK 0 1103 886 2 1490 372 22 0 0 chr1 118663545 118663590 -78531842 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1490 1050 224 31 94 chr1 118663590 118663696 -78531736 - RLTR25A LTR ERVK -218 885 777 2 1490 2452 162 82 24 chr1 118663703 118664226 -78531206 - RLTR26 LTR ERVK 0 642 72 2 1490 3259 181 7 17 chr1 118664226 118664924 -78530508 - L1VL4 LINE L1 -2134 3752 3062 2 1490 19896 105 3 36 chr1 118664925 118667612 -78527820 - L1Md_F2 LINE L1 -1 6584 3915 2 1490 1831 142 254 31 chr1 118667612 118668061 -78527371 + RLTR6_Mm LTR ERV1 37 585 -69 2 1490 19896 105 3 36 chr1 118668061 118671657 -78523775 - L1Md_F2 LINE L1 -1 3914 340 2 1490 5894 185 57 22 chr1 118671648 118673792 -78521640 - L1VL4 LINE L1 -2800 3077 631 2 1490 358 267 112 40 chr1 118673837 118674114 -78521318 - L1_Mur2 LINE L1 -5883 829 533 2 1490 31 44 0 0 chr1 118674408 118674453 -78520979 + AT_rich Low_complexity Low_complexity 1 45 0 2 1490 6542 198 43 7 chr1 118674453 118675833 -78519599 - Lx4A LINE L1 0 7058 5629 2 1490 593 263 40 24 chr1 118677289 118678077 -78517355 + MMSAT4 Satellite Satellite 1 800 0 2 1490 183 184 0 0 chr1 118678854 118678892 -78516540 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1490 1223 94 0 67 chr1 118679138 118679209 -78516223 - B2_Mm2 SINE B2 -14 181 123 2 1490 1749 128 167 42 chr1 118679209 118679569 -78515863 + RLTR44A LTR ERVK 1 405 0 2 1490 1223 94 0 67 chr1 118679569 118679690 -78515742 - B2_Mm2 SINE B2 -73 122 2 2 1490 387 0 0 0 chr1 118679770 118679813 -78515619 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1490 387 0 0 0 chr1 118679813 118679855 -78515577 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1490 240 219 0 45 chr1 118679950 118680017 -78515415 + L1_Rod LINE L1 5024 5087 -760 2 1490 369 0 0 0 chr1 118680183 118680224 -78515208 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1490 29 28 0 0 chr1 118680303 118680339 -78515093 + AT_rich Low_complexity Low_complexity 1 36 0 2 1490 1829 234 42 15 chr1 118680473 118680881 -78514551 - MTC LTR MaLR 0 421 3 2 1490 353 172 58 0 chr1 118680882 118680969 -78514463 - L1_Mur1 LINE L1 -5745 1237 1146 2 1490 7211 91 2 2 chr1 118680975 118682028 -78513404 - L1_Mus1 LINE L1 -4 6563 5511 2 1490 6043 167 64 1 chr1 118682021 118683264 -78512168 + L1_Mur1 LINE L1 1852 3173 -2713 2 1490 570 295 14 0 chr1 118683350 118683489 -78511943 + ORR1D2 LTR MaLR 9 149 -221 2 1490 635 120 0 9 chr1 118683782 118683891 -78511541 + (TCTCCC)n Simple_repeat Simple_repeat 1 108 0 2 1490 466 300 61 72 chr1 118683891 118684174 -78511258 - RLTR12B LTR ERVK -253 315 15 2 1490 267 354 33 120 chr1 118684747 118685046 -78510386 + ORR1D2 LTR MaLR 134 406 -13 2 1490 23 0 0 0 chr1 118685098 118685121 -78510311 + AT_rich Low_complexity Low_complexity 1 23 0 2 1490 351 0 0 0 chr1 118685169 118685208 -78510224 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1490 4578 83 3 2 chr1 118685238 118685854 -78509578 - L1_Mus2 LINE L1 -1 6565 5949 2 1490 2534 84 3 33 chr1 118685855 118686173 -78509259 + L1_Mus2 LINE L1 5533 5848 -35 2 1490 3000 72 2 5 chr1 118686173 118686566 -78508866 - MTA_Mm LTR MaLR -4 392 1 2 1490 2534 74 3 33 chr1 118686566 118686581 -78508851 + L1_Mus2 LINE L1 5849 5858 -708 2 1490 561 15 0 0 chr1 118686581 118686647 -78508785 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1490 2534 74 3 33 chr1 118686647 118686729 -78508703 + L1_Mus2 LINE L1 5859 5938 -628 2 1490 252 294 43 52 chr1 118686907 118687022 -78508410 + MLT1A0 LTR MaLR 224 337 -28 2 1490 409 364 18 47 chr1 118687128 118687298 -78508134 + B4 SINE B4 19 183 -109 2 1490 465 19 0 0 chr1 118687409 118687463 -78507969 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1490 307 319 44 0 chr1 118687821 118687912 -78507520 + B1F1 SINE Alu 6 100 -49 2 1490 1539 189 0 3 chr1 118688387 118688673 -78506759 - L1_Mur2 LINE L1 -97 5780 5496 2 1490 364 158 0 0 chr1 118688668 118688744 -78506688 + L1_Mur1 LINE L1 3695 3770 -2116 2 1490 1185 277 65 9 chr1 118688993 118689332 -78506100 - ORR1D1 LTR MaLR -12 362 5 2 1490 3121 137 4 4 chr1 118689378 118689875 -78505557 + Lx LINE L1 6151 6647 -7 2 1490 455 336 22 58 chr1 118690044 118690268 -78505164 + RMER15 LTR ERVL 38 253 -322 2 1490 351 258 0 0 chr1 118690293 118690359 -78505073 + RMER15 LTR ERVL 355 420 -155 2 1490 386 343 29 14 chr1 118690657 118690796 -78504636 - B4 SINE B4 -52 240 100 2 1490 749 156 0 48 chr1 118690840 118691029 -78504403 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1490 6341 204 35 11 chr1 118691040 118692857 -78502575 + Lx3C LINE L1 5112 6972 -4 2 1490 239 229 33 0 chr1 118693015 118693076 -78502356 + T-rich Low_complexity Low_complexity 3 65 0 2 1490 312 388 8 8 chr1 118693114 118693236 -78502196 - RSINE1 SINE B4 -38 127 6 2 1490 22 0 0 0 chr1 118693273 118693295 -78502137 + AT_rich Low_complexity Low_complexity 1 22 0 2 1490 7265 64 5 14 chr1 118693295 118694258 -78501174 - L1Md_F2 LINE L1 0 6582 5628 2 1490 264 333 11 11 chr1 118694441 118694529 -78500903 - ORR1E LTR MaLR -32 347 260 2 1490 336 340 19 19 chr1 118694639 118694747 -78500685 - ORR1E LTR MaLR -250 109 2 2 1490 1447 67 129 0 chr1 118694864 118695073 -78500359 + L1Md_F2 LINE L1 6347 6582 0 2 1490 2582 146 17 5 chr1 118695196 118695615 -78499817 - Lx2 LINE L1 -1 6996 6573 2 1490 286 314 155 97 chr1 118695633 118695788 -78499644 + RSINE1 SINE B4 2 165 0 2 1490 192 143 0 0 chr1 118695808 118695850 -78499582 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1490 494 361 34 34 chr1 118696430 118696639 -78498793 - ID_B1 SINE B4 -3 221 13 2 1490 432 37 0 0 chr1 118696707 118696761 -78498671 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1490 514 335 30 39 chr1 118697026 118697256 -78498176 - B4A SINE B4 -63 229 2 2 1490 1766 234 5 10 chr1 118697544 118697949 -78497483 - Lx4B LINE L1 -205 6853 6451 2 1490 1554 30 20 5 chr1 118699116 118699319 -78496113 + L1Md_F3 LINE L1 6379 6584 0 2 1490 246 105 0 0 chr1 118701696 118701734 -78493698 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1490 461 350 36 18 chr1 118701937 118702161 -78493271 - Lx7 LINE L1 -585 7111 6884 2 1490 256 276 0 0 chr1 118702174 118702250 -78493182 - Lx7 LINE L1 -856 6840 6765 2 1490 2029 159 31 17 chr1 118702290 118702438 -78492994 - L1_Mur2 LINE L1 -1266 4611 4454 2 1490 3467 28 0 0 chr1 118702438 118702834 -78492598 + MTA_Mm LTR MaLR 1 396 0 2 1490 2029 159 31 17 chr1 118702834 118703106 -78492326 - L1_Mur2 LINE L1 -1424 4453 4186 2 1490 775 188 58 23 chr1 118703104 118703278 -78492154 + L1_Mur1 LINE L1 4636 4815 -1071 2 1490 2470 223 139 21 chr1 118703294 118704147 -78491285 + Lx2B LINE L1 6046 6999 -1 2 1490 439 349 47 56 chr1 118704162 118704629 -78490803 - Lx7 LINE L1 -971 6725 6263 2 1490 5240 129 4 1 chr1 118704772 118705570 -78489862 - L1_Mus3 LINE L1 -1 6637 5838 2 1490 1158 164 67 22 chr1 118705570 118705794 -78489638 - L1_Mus3 LINE L1 -277 5606 5373 2 1490 1139 127 0 6 chr1 118705792 118705958 -78489474 - L1_Mus3 LINE L1 -137 6501 6337 2 1490 3274 131 0 2 chr1 118705955 118706476 -78488956 + L1_Mur2 LINE L1 3671 4190 -1687 2 1490 1284 269 15 56 chr1 118706476 118706818 -78488614 - RLTR25A LTR ERVK -774 329 2 2 1490 2192 224 14 2 chr1 118706826 118707322 -78488110 - L1_Mur2 LINE L1 -360 5517 5016 2 1490 1078 237 49 12 chr1 118707322 118707596 -78487836 + ORR1A3 LTR MaLR 4 347 -27 2 1490 362 310 19 0 chr1 118707602 118707760 -78487672 - MusHAL1 LINE L1 -2577 777 617 2 1490 413 159 0 0 chr1 118707761 118707830 -78487602 + L1_Mus1 LINE L1 6437 6505 -62 2 1490 263 150 48 48 chr1 118707889 118707952 -78487480 + L1_Mus2 LINE L1 6500 6562 -4 2 1490 600 241 63 35 chr1 118708027 118708257 -78487175 - L1_Mur2 LINE L1 -5984 1102 877 2 1490 26 0 0 0 chr1 118708660 118708686 -78486746 + AT_rich Low_complexity Low_complexity 1 26 0 3 1490 1190 34 0 14 chr1 118708834 118708982 -78486450 + B1_Mus2 SINE Alu 2 147 0 3 1490 1763 147 9 25 chr1 118709063 118709384 -78486048 - L1_Mus3 LINE L1 -1 6637 6322 3 1490 27617 137 12 6 chr1 118709384 118712337 -78483095 - L1_Mus3 LINE L1 -700 5938 2961 3 1490 5158 82 0 4 chr1 118712337 118713038 -78482394 + L1_Mus1 LINE L1 5870 6567 0 3 1490 27617 145 10 21 chr1 118713038 118715215 -78480217 - L1_Mus3 LINE L1 -2923 2960 826 3 1490 6067 216 30 9 chr1 118715210 118716371 -78479061 - Lx4A LINE L1 -107 6951 5761 3 1490 2771 109 2 14 chr1 118716371 118716797 -78478635 - BGLII LTR ERVK 0 421 1 3 1490 6067 216 30 9 chr1 118716797 118716931 -78478501 - Lx4A LINE L1 -1298 5760 5629 3 1490 730 229 32 26 chr1 118718496 118719800 -78475632 + MMSAT4 Satellite Satellite 1 1310 0 3 1490 360 0 0 0 chr1 118720632 118720672 -78474760 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1490 763 250 78 27 chr1 118720982 118721278 -78474154 - L1_Rod LINE L1 -163 5684 5374 3 1490 680 234 38 34 chr1 118721296 118721513 -78473919 - L1_Rod LINE L1 -825 5318 5029 3 1490 186 43 0 0 chr1 118721561 118721584 -78473848 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1490 213 39 0 0 chr1 118721584 118721609 -78473823 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1490 487 201 12 0 chr1 118721624 118721793 -78473639 + (TA)n Simple_repeat Simple_repeat 1 171 0 3 1490 282 288 16 8 chr1 118721877 118722003 -78473429 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 1490 596 285 57 25 chr1 118722186 118722467 -78472965 - L1_Rod LINE L1 -1593 4254 3965 3 1490 1677 224 151 7 chr1 118722474 118723107 -78472325 - Lx4B LINE L1 -4 7054 6274 3 1490 4350 190 48 46 chr1 118723132 118723346 -78472086 - L1_Mur2 LINE L1 -1 5876 5665 3 1490 1228 41 0 0 chr1 118723346 118723492 -78471940 + B1_Mus2 SINE Alu 2 147 0 3 1490 4350 190 48 46 chr1 118723492 118724418 -78471014 - L1_Mur2 LINE L1 -213 5664 4733 3 1490 499 230 37 0 chr1 118724419 118724554 -78470878 + L1_Mur2 LINE L1 3935 4074 -1803 3 1490 341 117 26 0 chr1 118724555 118724632 -78470800 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 3 1490 1474 194 3 9 chr1 118724634 118724649 -78470783 + L1_Mur2 LINE L1 4061 4074 -1803 3 1490 333 0 0 0 chr1 118724649 118724686 -78470746 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1490 1474 194 3 9 chr1 118724686 118724997 -78470435 + L1_Mur2 LINE L1 4075 4385 -1492 3 1490 2498 214 29 4 chr1 118724997 118725720 -78469712 - L1_Mur2 LINE L1 -2112 3765 3025 3 1490 17225 82 5 2 chr1 118725719 118728859 -78466573 - L1Md_F2 LINE L1 -12 6570 3423 3 1490 228 35 0 0 chr1 118728871 118728900 -78466532 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1490 1455 63 16 10 chr1 118728987 118729179 -78466253 - B2_Mm2 SINE B2 -2 193 1 3 1490 332 299 37 9 chr1 118729181 118729289 -78466143 - RLTR12B LTR ERVK -371 157 47 3 1490 279 337 54 0 chr1 118729316 118729408 -78466024 - B1F2 SINE Alu -52 97 1 3 1490 751 301 14 0 chr1 118729538 118729751 -78465681 - B3 SINE B2 0 216 1 3 1490 31877 91 4 5 chr1 118729802 118735982 -78459450 - L1Md_F2 LINE L1 -3 6579 406 3 1490 14086 111 25 1 chr1 118735989 118738829 -78456603 - L1Md_F LINE L1 -2469 3414 507 3 1490 986 194 42 130 chr1 118738828 118739010 -78456422 - L1_Mur2 LINE L1 -2845 3032 2867 3 1490 636 61 10 0 chr1 118739010 118739109 -78456323 - L1Md_F3 LINE L1 -15 6569 6470 3 1490 986 194 42 130 chr1 118739109 118739133 -78456299 - L1_Mur2 LINE L1 -3011 2866 2866 3 1490 234 0 0 0 chr1 118739133 118739159 -78456273 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1490 986 194 42 130 chr1 118739159 118739306 -78456126 - L1_Mur2 LINE L1 -3011 2866 2709 3 1490 293 240 106 32 chr1 118739306 118739430 -78456002 + MLT1A0 LTR MaLR 240 374 0 3 1490 1022 294 22 4 chr1 118739910 118740180 -78455252 - ORR1C2 LTR MaLR -109 275 1 3 1490 337 317 10 10 chr1 118741113 118741215 -78454217 + MLT1A1 LTR MaLR 288 389 -19 3 1490 1488 254 53 8 chr1 118741845 118742222 -78453210 + ORR1B1 LTR MaLR 1 394 0 3 1490 691 214 0 7 chr1 118742238 118742379 -78453053 + ORR1B1-int LTR MaLR 1600 1739 -224 3 1490 2337 205 23 19 chr1 118742380 118742853 -78452579 + ORR1B1-int LTR MaLR 852 1326 -183 3 1490 450 0 0 0 chr1 118743125 118743175 -78452257 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1490 2483 277 100 12 chr1 118743306 118744164 -78451268 + Lx6 LINE L1 6412 7345 -115 3 1490 717 274 54 25 chr1 118744164 118744479 -78450953 + L1VL2 LINE L1 86 409 -5926 3 1490 4832 166 39 35 chr1 118744488 118746200 -78449232 + L1_Mus3 LINE L1 509 2065 -3818 3 1490 11000 130 14 37 chr1 118746200 118748899 -78446533 + L1_Mus3 LINE L1 4013 6638 0 3 1490 609 14 0 0 chr1 118748939 118749009 -78446423 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 3 1490 265 148 32 64 chr1 118749061 118749155 -78446277 + A-rich Low_complexity Low_complexity 2 92 0 3 1490 321 89 0 0 chr1 118749174 118749219 -78446213 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1490 324 0 0 0 chr1 118749220 118749256 -78446176 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1490 1072 237 68 58 chr1 118749724 118750033 -78445399 + RLTR20C LTR ERVK 1 312 -222 3 1490 345 148 33 0 chr1 118750039 118750100 -78445332 + RLTR20C LTR ERVK 431 493 -85 3 1490 1466 205 34 58 chr1 118750124 118750287 -78445145 - L1_Mur3 LINE L1 -3808 2072 1925 3 1490 1272 82 36 52 chr1 118750287 118750481 -78444951 + B2_Mm1t SINE B2 2 192 -1 3 1490 1466 205 34 58 chr1 118750481 118750820 -78444612 - L1_Mur3 LINE L1 -3956 1924 1582 3 1490 1510 232 32 12 chr1 118750827 118751232 -78444200 - Lx2B LINE L1 -6 6994 6582 3 1491 1247 98 5 35 chr1 118751235 118751435 -78443997 - Lx LINE L1 -286 6368 6175 3 1491 1025 310 62 9 chr1 118751567 118752022 -78443410 - Lx7 LINE L1 -412 7284 6806 3 1491 36202 32 1 0 chr1 118752053 118759129 -78436303 - L1Md_T LINE L1 -1 6584 1 3 1491 1490 263 160 37 chr1 118759316 118760022 -78435410 + RCHARR1 DNA MER1_type 173 965 -9 3 1491 697 391 18 18 chr1 118760458 118760742 -78434690 + B4A SINE B4 2 285 -7 3 1491 222 319 0 14 chr1 118760752 118760825 -78434607 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1491 884 44 0 0 chr1 118761674 118761788 -78433644 - L1_Mus1 LINE L1 -493 6074 5961 3 1491 225 188 0 0 chr1 118761784 118761832 -78433600 + L1_Mus1 LINE L1 6079 6126 -441 3 1491 752 216 56 15 chr1 118762179 118762561 -78432871 + L1_Mur2 LINE L1 508 968 -5744 3 1491 2353 342 67 26 chr1 118762569 118763590 -78431842 - MTEa-int LTR MaLR -518 1062 1 3 1491 854 290 85 55 chr1 118763602 118763930 -78431502 - MTEa LTR MaLR -14 365 28 3 1491 268 316 60 0 chr1 118764224 118764442 -78430990 + L1M4 LINE L1 5163 5393 -753 3 1491 192 246 14 58 chr1 118764472 118764541 -78430891 - L3 LINE CR1 -2264 2225 2160 3 1491 470 209 241 43 chr1 118764666 118764902 -78430530 + ORR1D2 LTR MaLR 4 294 -65 3 1491 210 71 0 0 chr1 118764902 118764930 -78430502 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1491 714 213 13 7 chr1 118765572 118765723 -78429709 + URR1B DNA MER1_type 1 152 -73 3 1491 4615 92 11 0 chr1 118765727 118766355 -78429077 - L1_Mus1 LINE L1 -1 6566 5932 3 1491 897 43 0 0 chr1 118766355 118766470 -78428962 + L1_Mus1 LINE L1 5812 5926 -640 3 1491 433 216 11 0 chr1 118766470 118766558 -78428874 + URR1B DNA MER1_type 136 224 -1 3 1491 25 31 0 0 chr1 118767170 118767202 -78428230 + AT_rich Low_complexity Low_complexity 1 32 0 3 1491 23 0 0 0 chr1 118767226 118767249 -78428183 + AT_rich Low_complexity Low_complexity 1 23 0 3 1491 861 281 64 94 chr1 118768147 118768508 -78426924 - ORR1E LTR MaLR -7 352 3 3 1491 289 227 48 67 chr1 118768703 118768807 -78426625 - MIR SINE MIR -120 142 41 3 1491 564 338 50 42 chr1 118769685 118769923 -78425509 - B4A SINE B4 -42 250 11 3 1491 232 316 34 34 chr1 118769928 118770164 -78425268 + L1M2 LINE L1 3196 3431 -2712 3 1491 730 210 16 69 chr1 118770665 118770854 -78424578 + ORR1D1 LTR MaLR 2 180 -194 3 1491 680 152 0 8 chr1 118770854 118770987 -78424445 + CT-rich Low_complexity Low_complexity 4 135 0 3 1491 616 284 33 56 chr1 118771004 118771217 -78424215 + ORR1D1 LTR MaLR 166 373 -1 3 1491 845 332 56 0 chr1 118771231 118771517 -78423915 + MTE2b LTR MaLR 19 320 -59 3 1491 676 311 73 70 chr1 118771687 118771848 -78423584 - ORR1E LTR MaLR -2 357 203 3 1491 6269 84 100 20 chr1 118771848 118772794 -78422638 + RLTR13D5 LTR ERVK 2 1023 0 3 1491 676 311 73 70 chr1 118772794 118772988 -78422444 - ORR1E LTR MaLR -157 202 1 3 1491 22 35 0 0 chr1 118773601 118773630 -78421802 + AT_rich Low_complexity Low_complexity 1 29 0 3 1491 29 0 0 0 chr1 118773937 118773966 -78421466 + AT_rich Low_complexity Low_complexity 1 29 0 3 1491 3306 266 52 11 chr1 118774163 118775522 -78419910 - RMER1A Other Other -4 1026 1 3 1491 787 337 127 5 chr1 118775548 118775931 -78419501 - RMER1A Other Other -578 452 45 3 1491 1212 322 34 5 chr1 118775897 118776312 -78419120 - RMER1B Other Other -632 434 8 3 1491 36775 52 1 8 chr1 118776728 118782680 -78412752 - L1Md_F2 LINE L1 -39 6543 643 3 1491 23773 124 13 4 chr1 118782687 118787180 -78408252 - L1Md_F LINE L1 -963 4920 387 3 1491 1245 235 56 0 chr1 118787497 118787765 -78407667 + ORR1B1 LTR MaLR 104 386 -8 3 1491 2580 150 12 0 chr1 118787839 118788258 -78407174 - Lx LINE L1 -221 5662 5239 3 1491 5990 132 41 3 chr1 118788255 118789205 -78406227 + Lx LINE L1 5662 6647 -7 3 1491 1448 255 54 3 chr1 118789350 118789684 -78405748 + MTEa LTR MaLR 23 373 -6 3 1491 396 0 0 0 chr1 118789821 118789865 -78405567 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1491 493 306 36 57 chr1 118789956 118790150 -78405282 - B3A SINE B2 -4 194 5 3 1491 21 0 0 0 chr1 118791391 118791412 -78404020 + AT_rich Low_complexity Low_complexity 1 21 0 3 1491 953 259 41 107 chr1 118791681 118791828 -78403604 + RLTR9A LTR ERVK 1 127 -241 3 1491 482 143 49 39 chr1 118791828 118791930 -78403502 - L1_Mus2 LINE L1 0 6566 6464 3 1491 953 259 41 107 chr1 118791930 118792176 -78403256 + RLTR9A LTR ERVK 128 368 0 3 1491 584 314 7 0 chr1 118792176 118792316 -78403116 - B3A SINE B2 -31 167 27 3 1491 512 215 109 15 chr1 118793534 118793671 -78401761 + MTD LTR MaLR 270 419 0 3 1491 287 61 41 0 chr1 118793770 118793819 -78401613 + (TTTTTA)n Simple_repeat Simple_repeat 2 52 0 3 1491 38865 35 1 6 chr1 118793822 118800005 -78395427 - L1Md_A LINE L1 -2 6580 434 3 1491 477 242 134 65 chr1 118800248 118800658 -78394774 - L1MA8 LINE L1 -358 5942 5525 3 1491 261 283 48 39 chr1 118800938 118801041 -78394391 - RMER2 LTR ERV1 -4 563 460 3 1491 1796 131 115 35 chr1 118801044 118801392 -78394040 + Lx LINE L1 6274 6649 -5 3 1491 989 256 175 32 chr1 118801424 118801795 -78393637 - RMER2 LTR ERV1 -143 424 1 3 1491 614 341 56 56 chr1 118801976 118802336 -78393096 + MTD LTR MaLR 60 419 0 3 1491 414 0 0 0 chr1 118802617 118802663 -78392769 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1491 306 254 0 27 chr1 118802771 118802844 -78392588 + MERVK26-int LTR ERVK 285 355 -6564 3 1491 2363 192 26 2 chr1 118803291 118803744 -78391688 - RLTR11A2 LTR ERVK -3 524 61 3 1491 1003 234 23 9 chr1 118804288 118804504 -78390928 + URR1A DNA MER1_type 2 220 -6 3 1491 252 143 0 0 chr1 118804846 118804888 -78390544 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1491 24 0 0 0 chr1 118804915 118804939 -78390493 + AT_rich Low_complexity Low_complexity 1 24 0 4 1491 493 344 6 80 chr1 118805029 118805342 -78390090 - B4A SINE B4 0 292 3 4 1491 415 278 131 0 chr1 118805501 118805692 -78389740 - B3 SINE B2 0 216 1 4 1491 806 285 31 69 chr1 118806193 118806350 -78389082 - L1_Mur3 LINE L1 -1335 4545 4416 4 1491 723 175 40 40 chr1 118806350 118806499 -78388933 - B1_Mur4 SINE Alu 0 150 2 4 1491 806 285 31 69 chr1 118806499 118806820 -78388612 - L1_Mur3 LINE L1 -1465 4415 4085 4 1491 198 0 0 0 chr1 118806869 118806891 -78388541 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1491 675 0 0 0 chr1 118807635 118807710 -78387722 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1491 567 0 0 0 chr1 118808736 118808799 -78386633 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1491 537 347 41 19 chr1 118808810 118809077 -78386355 - B4A SINE B4 -18 274 2 4 1491 448 357 29 0 chr1 118809164 118809304 -78386128 - RSINE1 SINE B4 -20 145 2 4 1491 474 101 0 0 chr1 118810051 118810120 -78385312 + (CATA)n Simple_repeat Simple_repeat 2 70 0 4 1491 247 91 68 0 chr1 118810120 118810164 -78385268 + L1_Mur2 LINE L1 5211 5257 -620 4 1491 357 82 0 0 chr1 118810325 118810374 -78385058 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1491 189 0 0 0 chr1 118810374 118810395 -78385037 + (CCA)n Simple_repeat Simple_repeat 3 23 0 4 1491 3408 153 30 22 chr1 118810931 118811525 -78383907 - Lx2B LINE L1 -98 6902 6304 4 1491 229 216 12 75 chr1 118811525 118811605 -78383827 + MER65D LTR ERV1 361 435 -38 4 1491 315 120 0 0 chr1 118811606 118811656 -78383776 - Lx2B LINE L1 -780 6220 6171 4 1491 207 217 0 0 chr1 118812397 118812457 -78382975 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1491 275 310 99 25 chr1 118812500 118812662 -78382770 - L1M1 LINE L1 -386 5905 5732 4 1491 27 0 0 0 chr1 118812717 118812744 -78382688 + AT_rich Low_complexity Low_complexity 1 27 0 4 1491 288 339 236 23 chr1 118813490 118813837 -78381595 + MLT1D LTR MaLR 5 425 -80 4 1491 3074 183 34 10 chr1 118813961 118814558 -78380874 - Lx4B LINE L1 -4 7054 6444 4 1491 314 93 19 0 chr1 118814558 118814612 -78380820 + L1_Mm LINE L1 5005 5059 -824 4 1491 485 157 0 22 chr1 118814612 118814703 -78380729 - L1Md_F LINE L1 -873 5010 4922 4 1491 14847 114 14 9 chr1 118814702 118817890 -78377542 - L1Md_F LINE L1 -2448 3435 233 4 1491 10549 232 40 68 chr1 118817889 118818626 -78376806 - L1_Mur1 LINE L1 -917 4969 4211 4 1491 540 0 0 0 chr1 118818626 118818686 -78376746 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1491 302 45 23 0 chr1 118818695 118818739 -78376693 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1491 10549 232 40 68 chr1 118818739 118819967 -78375465 - L1_Mur1 LINE L1 -1685 4201 3145 4 1491 5034 82 3 14 chr1 118819967 118820668 -78374764 - L1Md_F2 LINE L1 0 6582 5890 4 1491 10549 232 40 68 chr1 118820668 118821637 -78373795 - L1_Mur1 LINE L1 -2742 3144 2177 4 1491 209 33 0 32 chr1 118821637 118821668 -78373764 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 4 1491 10549 232 40 68 chr1 118821668 118821776 -78373656 - L1_Mur1 LINE L1 -3710 2176 2052 4 1491 516 81 0 0 chr1 118821776 118821850 -78373582 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1491 10549 232 40 68 chr1 118821850 118822339 -78373093 - L1_Mur1 LINE L1 -3835 2051 1528 4 1491 2137 57 0 0 chr1 118822341 118822606 -78372826 + L1_Mus1 LINE L1 6303 6567 0 4 1491 207 100 0 0 chr1 118822779 118822809 -78372623 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1491 3006 71 3 0 chr1 118822813 118823205 -78372227 - L1_Mus2 LINE L1 -1 6565 6173 4 1491 346 245 10 41 chr1 118823267 118823365 -78372067 - B3A SINE B2 -100 98 4 4 1491 2948 79 8 2 chr1 118823665 118824059 -78371373 - MTA_Mm LTR MaLR 0 396 1 4 1491 10468 201 43 28 chr1 118824419 118827696 -78367736 - Lx5 LINE L1 -140 6910 3565 4 1491 2196 217 26 53 chr1 118827700 118827839 -78367593 - Lx5 LINE L1 -4035 1842 1704 4 1491 1782 64 0 0 chr1 118827839 118828073 -78367359 + L1Md_F2 LINE L1 6349 6582 0 4 1491 2196 217 26 53 chr1 118828073 118828281 -78367151 - Lx5 LINE L1 -4174 1703 1517 4 1491 915 102 0 0 chr1 118828281 118828418 -78367014 + (TTC)n Simple_repeat Simple_repeat 2 138 0 4 1491 2196 217 26 53 chr1 118828418 118828692 -78366740 - Lx5 LINE L1 -4361 1516 1237 4 1491 326 164 0 0 chr1 118828693 118828748 -78366684 + URR1B DNA MER1_type 171 225 0 4 1491 1332 170 30 60 chr1 118828952 118829284 -78366148 + RLTRETN_Mm LTR ERVK 1 322 0 4 1491 302 184 13 0 chr1 118829286 118829362 -78366070 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1491 345 159 0 0 chr1 118830389 118830452 -78364980 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1491 276 111 0 0 chr1 118830650 118830695 -78364737 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1491 417 325 72 30 chr1 118830738 118831001 -78364431 - B4 SINE B4 -5 287 14 4 1491 518 0 16 0 chr1 118831004 118831066 -78364366 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 4 1491 1238 237 208 44 chr1 118831104 118831585 -78363847 + RMER2 LTR ERV1 8 567 0 4 1491 237 65 0 0 chr1 118831658 118831689 -78363743 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1491 304 321 74 19 chr1 118831787 118831895 -78363537 + B4A SINE B4 18 131 -161 4 1491 29 28 0 0 chr1 118832226 118832262 -78363170 + AT_rich Low_complexity Low_complexity 1 36 0 4 1491 1258 301 101 12 chr1 118832262 118832766 -78362666 - Lx8 LINE L1 -3 7470 6922 4 1491 492 276 24 8 chr1 118833302 118833426 -78362006 - Tigger1 DNA MER2_type 0 2418 2293 4 1491 315 150 0 0 chr1 118833528 118833588 -78361844 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1491 317 338 13 33 chr1 118834196 118834346 -78361086 - L1_Mur3 LINE L1 -264 5616 5470 4 1491 500 266 8 8 chr1 118834360 118834485 -78360947 + Lx7 LINE L1 5621 5745 -1951 4 1491 230 188 65 65 chr1 118834486 118834594 -78360838 + Zaphod2 DNA Tip100 1696 1803 -1721 4 1491 286 303 32 24 chr1 118834598 118834723 -78360709 + Lx7 LINE L1 5888 6013 -1683 4 1491 1153 106 6 11 chr1 118834835 118835017 -78360415 + Lx2A1 LINE L1 5642 5822 -1186 4 1491 1329 189 4 8 chr1 118835042 118835298 -78360134 + Lx2 LINE L1 6679 6933 -64 4 1491 1121 203 157 4 chr1 118835302 118835564 -78359868 + RLTR18 LTR ERVK 263 564 -52 4 1491 945 265 104 57 chr1 118835576 118836045 -78359387 + RMER4B LTR ERVK 1 562 -49 4 1491 444 37 0 0 chr1 118836084 118836138 -78359294 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1491 381 182 10 20 chr1 118837289 118837390 -78358042 + CT-rich Low_complexity Low_complexity 1 100 0 4 1491 396 40 0 0 chr1 118837390 118837440 -78357992 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1491 979 287 67 82 chr1 118837802 118838340 -78357092 - RMER5 LTR ERV1 -2 532 3 4 1491 10073 7 1 0 chr1 118839259 118840469 -78354963 - L1Md_A LINE L1 -624 5958 4747 4 1491 5482 18 0 0 chr1 118840469 118841095 -78354337 + L1Md_A LINE L1 5957 6582 0 4 1491 1164 302 58 3 chr1 118841571 118841900 -78353532 + ORR1A2 LTR MaLR 2 348 -11 4 1491 1212 271 10 20 chr1 118841913 118842211 -78353221 + ORR1A2-int LTR MaLR 9 303 -1277 4 1491 2216 154 163 2 chr1 118842222 118842676 -78352756 + RLTR11A2 LTR ERVK 1 527 0 4 1491 1847 157 53 12 chr1 118842712 118843053 -78352379 - RLTR15 LTR ERVK -4 355 1 4 1491 1512 315 64 49 chr1 118843053 118844023 -78351409 + ORR1A2 LTR MaLR 1 1297 -283 4 1491 312 295 178 8 chr1 118844047 118844171 -78351261 + ORR1A2 LTR MaLR 230 374 -5 4 1491 21 0 0 0 chr1 118844218 118844239 -78351193 + AT_rich Low_complexity Low_complexity 1 21 0 4 1491 826 266 15 0 chr1 118844729 118844932 -78350500 - B3 SINE B2 -6 210 5 4 1491 21 82 0 0 chr1 118845289 118845338 -78350094 + AT_rich Low_complexity Low_complexity 1 49 0 4 1491 497 228 73 38 chr1 118845463 118845633 -78349799 + L1Md_F LINE L1 609 824 -5795 4 1491 607 240 70 11 chr1 118845818 118846003 -78349429 - RMER15 LTR ERVL 0 575 380 4 1491 290 167 16 16 chr1 118846033 118846094 -78349338 + B1_Mus2 SINE Alu 87 147 0 4 1491 243 218 0 0 chr1 118846096 118846151 -78349281 + GA-rich Low_complexity Low_complexity 4 58 0 4 1491 301 252 42 34 chr1 118846156 118846275 -78349157 + L1MD LINE L1 3081 3200 -2946 4 1491 249 33 0 0 chr1 118846496 118846526 -78348906 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1491 321 26 0 0 chr1 118846530 118846568 -78348864 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 4 1491 216 0 0 0 chr1 118847001 118847025 -78348407 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1491 236 164 55 0 chr1 118848595 118848650 -78346782 + GA-rich Low_complexity Low_complexity 3 60 0 4 1491 249 108 0 0 chr1 118848680 118848717 -78346715 + (GGA)n Simple_repeat Simple_repeat 2 38 0 4 1491 762 322 77 63 chr1 118849136 118849472 -78345960 + MTE2b LTR MaLR 2 318 -61 4 1491 2952 160 18 22 chr1 118849472 118850027 -78345405 - RLTR31_Mur LTR ERVK 0 553 1 4 1491 762 310 105 52 chr1 118850027 118850094 -78345338 + MTE2b LTR MaLR 319 379 0 4 1491 890 272 20 61 chr1 118850192 118850439 -78344993 + B4 SINE B4 44 280 -12 4 1491 397 344 47 0 chr1 118851154 118851346 -78344086 + Lx8 LINE L1 6897 7097 -376 4 1491 1100 109 0 0 chr1 118851397 118851544 -78343888 + B1_Mus2 SINE Alu 1 147 0 4 1491 331 50 67 0 chr1 118851548 118851608 -78343824 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1491 8413 136 17 66 chr1 118851806 118853481 -78341951 + L1_Mur2 LINE L1 3371 4962 -915 4 1491 283 299 63 15 chr1 118853641 118853791 -78341641 + RLTR4_MM-int LTR ERV1 521 723 -6878 4 1491 848 53 0 0 chr1 118854362 118854475 -78340957 + L1_Mus1 LINE L1 6451 6563 -4 4 1491 207 204 0 0 chr1 118854482 118854526 -78340906 + A-rich Low_complexity Low_complexity 2 45 0 4 1491 260 398 0 8 chr1 118854526 118854655 -78340777 + RLTR4_MM-int LTR ERV1 1306 1433 -3630 4 1491 362 325 59 50 chr1 118854819 118855174 -78340258 - MTE2b LTR MaLR -42 377 21 4 1491 256 356 25 82 chr1 118855591 118855750 -78339682 + RSINE1 SINE B4 14 163 -2 4 1491 33 43 0 0 chr1 118856314 118856361 -78339071 + AT_rich Low_complexity Low_complexity 1 47 0 4 1491 303 287 95 32 chr1 118856442 118856568 -78338864 - ORR1E LTR MaLR -153 206 73 4 1491 1053 208 18 9 chr1 118857308 118857531 -78337901 - URR1B DNA MER1_type 0 225 1 4 1491 387 269 9 28 chr1 118857715 118857822 -78337610 - RMER30 DNA MER1_type -1 201 97 4 1491 195 188 0 0 chr1 118858569 118858617 -78336815 + CT-rich Low_complexity Low_complexity 2 49 0 4 1491 2994 72 0 0 chr1 118858994 118859381 -78336051 - L1_Mus1 LINE L1 0 6567 6181 4 1491 1072 270 70 76 chr1 118859903 118860095 -78335337 + ORR1C2 LTR MaLR 5 179 -205 4 1491 796 20 20 0 chr1 118860095 118860197 -78335235 + (TC)n Simple_repeat Simple_repeat 2 105 0 4 1491 1072 270 70 76 chr1 118860197 118860361 -78335071 + ORR1C2 LTR MaLR 180 358 -26 4 1491 3597 71 2 0 chr1 118860374 118860837 -78334595 + L1_Mus1 LINE L1 6104 6567 0 5 1491 326 182 0 0 chr1 118860853 118860908 -78334524 + ORR1C2 LTR MaLR 330 384 0 4 1491 504 45 0 0 chr1 118860947 118861014 -78334418 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1491 319 286 35 35 chr1 118861826 118861971 -78333461 - B1F1 SINE Alu -1 148 4 5 1491 287 312 0 15 chr1 118861978 118862043 -78333389 - ID4_ SINE ID -17 66 3 5 1491 272 288 105 45 chr1 118862316 118862516 -78332916 + RLTR42-int LTR ERVK 1187 1398 -4124 5 1491 1342 222 20 76 chr1 118862592 118862986 -78332446 + ORR1D1 LTR MaLR 1 372 -2 5 1491 274 169 42 0 chr1 118863247 118863365 -78332067 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 5 1491 543 268 49 0 chr1 118864222 118864364 -78331068 + B1_Mur2 SINE Alu 1 149 0 5 1491 315 0 0 0 chr1 118864587 118864622 -78330810 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1491 321 328 17 0 chr1 118864805 118864921 -78330511 + RSINE1 SINE B4 13 130 -35 5 1491 761 200 16 0 chr1 118865115 118865240 -78330192 + ETnERV2-int LTR ERVK 7070 7196 -210 5 1491 30119 97 19 4 chr1 118865948 118871242 -78324190 + L1Md_F2 LINE L1 212 5585 -298 5 1491 6876 85 15 17 chr1 118871244 118872231 -78323201 + L1Md_F2 LINE L1 5588 6572 -10 5 1491 860 355 15 11 chr1 118872879 118873152 -78322280 - B4A SINE B4 -3 289 16 5 1491 423 346 6 25 chr1 118873211 118873374 -78322058 - RSINE1 SINE B4 -2 163 4 5 1491 225 250 21 0 chr1 118874678 118874726 -78320706 - MTE2b LTR MaLR -1 358 310 5 1491 1096 316 22 12 chr1 118874764 118875084 -78320348 - MTE2b LTR MaLR -41 338 16 5 1491 713 51 10 0 chr1 118875100 118875198 -78320234 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1491 265 111 266 16 chr1 118875200 118875264 -78320168 + RMER4A LTR ERVK 387 466 0 5 1491 643 165 77 28 chr1 118875264 118875406 -78320026 + RMER4A LTR ERVK 317 465 -1 5 1491 5143 265 50 24 chr1 118875420 118876840 -78318592 + Lx6 LINE L1 5887 7343 -117 5 1491 4056 55 2 4 chr1 118876924 118877440 -78317992 + L1Md_F2 LINE L1 6049 6563 -19 5 1491 2102 78 7 7 chr1 118877994 118878302 -78317130 - L1_Mus4 LINE L1 -4 6632 6325 5 1491 633 280 40 30 chr1 118878500 118878699 -78316733 - MTEb LTR MaLR -11 368 168 5 1491 347 360 36 18 chr1 118878823 118878990 -78316442 - MTEb LTR MaLR -209 170 1 5 1491 544 257 45 26 chr1 118879927 118880083 -78315349 - RSINE1 SINE B4 -6 159 1 5 1491 2586 285 77 54 chr1 118880110 118881006 -78314426 - Lx7 LINE L1 0 7696 6762 5 1491 186 43 0 0 chr1 118881006 118881029 -78314403 + (TAG)n Simple_repeat Simple_repeat 1 23 0 5 1491 2586 285 77 54 chr1 118881029 118881040 -78314392 - Lx7 LINE L1 -935 6761 6755 5 1491 1543 105 4 62 chr1 118881040 118881315 -78314117 - Lx LINE L1 0 6654 6396 5 1491 2586 285 77 54 chr1 118881315 118881579 -78313853 - Lx7 LINE L1 -942 6754 6497 5 1491 577 322 67 22 chr1 118882006 118882273 -78313159 + Lx8 LINE L1 7053 7331 -142 5 1492 654 104 0 0 chr1 118882830 118882926 -78312506 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1492 537 391 69 0 chr1 118883369 118883645 -78311787 - MER44B DNA MER2_type -255 295 1 5 1492 423 0 0 0 chr1 118884210 118884257 -78311175 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1492 325 315 127 65 chr1 118884596 118884871 -78310561 - B4A SINE B4 0 292 1 5 1492 3333 218 36 20 chr1 118885351 118886106 -78309326 - Lx4B LINE L1 -3 7055 6289 5 1492 1890 158 10 47 chr1 118886100 118886486 -78308946 - L1_Mur1 LINE L1 -1854 4023 3652 5 1492 20785 157 48 5 chr1 118886699 118889636 -78305796 - Lx LINE L1 0 6654 3489 5 1492 243 0 0 0 chr1 118889636 118889663 -78305769 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1492 20785 174 65 7 chr1 118889663 118891745 -78303687 - Lx LINE L1 -2395 3488 1386 5 1492 7528 93 20 1 chr1 118891756 118893550 -78301882 - L1_Mus1 LINE L1 0 6567 4752 5 1492 3722 144 6 28 chr1 118893541 118894318 -78301114 - L1VL4 LINE L1 -2515 1044 289 5 1492 1622 190 6 0 chr1 118894316 118894632 -78300800 - L1_Mur1 LINE L1 -2887 2990 2673 5 1492 457 82 0 0 chr1 118894643 118894716 -78300716 - L1_Mur1 LINE L1 -4115 1765 1693 5 1492 1448 202 17 81 chr1 118894717 118895448 -78299984 - L1_Mur1 LINE L1 -4312 1565 890 5 1492 397 269 27 43 chr1 118895656 118895825 -78299607 + L1MC LINE L1 2703 2861 -3285 5 1492 341 0 0 43 chr1 118895838 118895884 -78299548 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 5 1492 2535 242 33 2 chr1 118895885 118895973 -78299459 - Lx2B LINE L1 -27 6973 6882 5 1492 198 0 0 0 chr1 118895973 118895995 -78299437 + (CCCA)n Simple_repeat Simple_repeat 2 23 0 5 1492 2535 242 33 2 chr1 118895995 118896449 -78298983 - Lx2B LINE L1 -119 6881 6415 5 1492 257 213 122 127 chr1 118896461 118896729 -78298703 + L1MC LINE L1 2880 3148 -2998 5 1492 296 315 191 52 chr1 118897368 118897562 -78297870 + ID_B1 SINE B4 4 224 0 5 1492 450 0 0 0 chr1 118898485 118898535 -78296897 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1492 499 355 55 10 chr1 118898649 118898851 -78296581 - B4 SINE B4 -73 219 9 5 1492 21 71 0 0 chr1 118899477 118899519 -78295913 + AT_rich Low_complexity Low_complexity 1 42 0 5 1492 603 0 0 0 chr1 118900022 118900089 -78295343 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1492 507 95 0 0 chr1 118900089 118900162 -78295270 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1492 342 288 0 0 chr1 118900164 118900237 -78295195 - RSINE1 SINE B4 -18 147 75 5 1492 415 330 117 48 chr1 118901286 118901534 -78293898 + B4A SINE B4 11 275 -17 5 1492 663 65 0 0 chr1 118901590 118901683 -78293749 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1492 453 350 60 38 chr1 118901767 118902002 -78293430 + RLTR26 LTR ERVK 97 336 -306 5 1492 7611 85 3 5 chr1 118902008 118903613 -78291819 + L1_Mus1 LINE L1 4965 6566 -1 5 1492 354 368 27 58 chr1 118904021 118904278 -78291154 - MLT1A0 LTR MaLR -55 310 62 5 1492 323 281 25 0 chr1 118904285 118904406 -78291026 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 1492 951 96 0 20 chr1 118904504 118904749 -78290683 + (GA)n Simple_repeat Simple_repeat 1 239 0 5 1492 1889 279 117 104 chr1 118904799 118905646 -78289786 - RMER13A LTR ERVK -2 858 1 5 1492 457 365 160 45 chr1 118905646 118906011 -78289421 - MLT2B2 LTR ERVL -88 427 20 5 1492 265 270 71 116 chr1 118906061 118906141 -78289291 + MTE2b LTR MaLR 79 165 -214 5 1492 375 23 0 0 chr1 118906141 118906185 -78289247 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1492 491 256 85 40 chr1 118906185 118906362 -78289070 + MTE2b LTR MaLR 166 379 0 5 1492 251 68 68 0 chr1 118906666 118906710 -78288722 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 5 1492 551 249 101 56 chr1 118906734 118906913 -78288519 + RMER19C LTR ERVK 13 199 -412 5 1492 497 355 12 25 chr1 118907055 118907217 -78288215 - B4 SINE B4 -42 250 91 5 1492 945 315 16 22 chr1 118907741 118908111 -78287321 - ORR1D1 LTR MaLR 0 370 3 5 1492 391 221 107 4 chr1 118908113 118908208 -78287224 - ORR1D1-int LTR MaLR 0 1370 1279 5 1492 1384 240 66 12 chr1 118908416 118908749 -78286683 - ORR1D1 LTR MaLR -23 351 1 5 1492 2666 159 20 44 chr1 118908841 118909381 -78286051 - RLTR11A2 LTR ERVK 0 527 1 5 1492 898 69 0 15 chr1 118910162 118910295 -78285137 + (GAA)n Simple_repeat Simple_repeat 1 131 0 5 1492 926 180 11 6 chr1 118910307 118910486 -78284946 + RLTR11A2 LTR ERVK 267 446 -81 5 1492 22 0 0 0 chr1 118910944 118910966 -78284466 + AT_rich Low_complexity Low_complexity 1 22 0 5 1492 3402 52 28 9 chr1 118911026 118911454 -78283978 + RLTR10C LTR ERVK 1 436 0 5 1492 236 30 30 0 chr1 118911582 118911615 -78283817 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1492 307 330 109 29 chr1 118911713 118911949 -78283483 - B4A SINE B4 -39 253 1 5 1492 21 0 0 0 chr1 118912605 118912626 -78282806 + AT_rich Low_complexity Low_complexity 1 21 0 5 1492 2500 179 23 4 chr1 118913178 118913665 -78281767 + Lx LINE L1 6159 6654 0 5 1492 191 368 71 54 chr1 118913688 118913872 -78281560 + MIRb SINE MIR 73 259 -9 5 1492 1252 179 4 18 chr1 118914035 118914263 -78281169 + URR1B DNA MER1_type 1 225 0 5 1492 1921 207 78 10 chr1 118914457 118914843 -78280589 - MTC LTR MaLR -8 413 2 5 1492 573 354 17 0 chr1 118915215 118915390 -78280042 + ID_B1 SINE B4 15 192 -32 5 1492 387 269 41 7 chr1 118915693 118915872 -78279560 + Lx8 LINE L1 5760 5947 -1697 5 1492 256 274 119 8 chr1 118916006 118916124 -78279308 + RLTR42-int LTR ERVK 1269 1399 -4123 5 1492 437 392 26 19 chr1 118916943 118917099 -78278333 + RSINE1 SINE B4 9 165 0 5 1492 21 0 0 0 chr1 118917146 118917167 -78278265 + AT_rich Low_complexity Low_complexity 1 21 0 5 1492 317 289 155 17 chr1 118918026 118918142 -78277290 + B4A SINE B4 2 133 -159 5 1492 909 134 0 0 chr1 118918289 118918438 -78276994 + (GA)n Simple_repeat Simple_repeat 1 149 0 5 1492 27 0 0 0 chr1 118919307 118919334 -78276098 + AT_rich Low_complexity Low_complexity 1 27 0 5 1492 271 229 14 28 chr1 118919400 118919503 -78275929 + (TATATG)n Simple_repeat Simple_repeat 1 101 0 5 1492 439 332 132 78 chr1 118919545 118920002 -78275430 - L1M4 LINE L1 -5083 1459 979 5 1492 982 241 5 0 chr1 118920002 118920222 -78275210 + URR1B DNA MER1_type 5 225 0 5 1492 439 332 132 78 chr1 118920222 118920355 -78275077 - L1M4 LINE L1 -5564 978 838 5 1492 267 31 0 0 chr1 118920444 118920476 -78274956 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1492 652 338 40 57 chr1 118920546 118920794 -78274638 - B4A SINE B4 -44 248 5 5 1492 1546 168 92 0 chr1 118920965 118921269 -78274163 - IAPEY3_LTR LTR ERVK 0 332 1 5 1492 551 328 33 28 chr1 118921457 118921693 -78273739 - B4 SINE B4 -8 284 39 5 1492 618 133 0 0 chr1 118922545 118922658 -78272774 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1492 257 109 18 0 chr1 118922788 118922843 -78272589 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1492 521 15 15 0 chr1 118922845 118922911 -78272521 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 5 1492 430 356 0 46 chr1 118924682 118924835 -78270597 - RSINE1 SINE B4 -17 148 3 5 1492 1248 45 0 0 chr1 118925428 118925583 -78269849 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 5 1492 364 230 20 33 chr1 118926000 118926153 -78269279 + (TA)n Simple_repeat Simple_repeat 1 151 0 5 1492 4976 281 53 30 chr1 118926296 118928410 -78267022 - Lx7 LINE L1 -329 7367 5190 5 1492 2811 21 0 27 chr1 118929114 118929450 -78265982 + IAPLTR2b LTR ERVK 1 327 0 5 1492 371 261 22 7 chr1 118929659 118929794 -78265638 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 1492 286 310 0 0 chr1 118929881 118929939 -78265493 + ID4 SINE ID 16 73 -10 5 1492 243 301 13 64 chr1 118929939 118929958 -78265474 + B4 SINE B4 16 88 -204 6 1492 1422 43 32 0 chr1 118930081 118930267 -78265165 - B2_Mm1t SINE B2 0 193 2 6 1492 259 325 35 52 chr1 118930485 118930657 -78264775 + L1MC4 LINE L1 6471 6639 -1403 6 1492 242 297 0 0 chr1 118930826 118930890 -78264542 + L1MD LINE L1 5497 5560 -680 6 1492 302 383 0 25 chr1 118930921 118931039 -78264393 - PB1D10 SINE Alu -1 116 2 6 1492 309 252 51 89 chr1 118931090 118931247 -78264185 + L1MD LINE L1 5630 5780 -399 6 1492 2513 181 72 20 chr1 118931724 118932226 -78263206 + RLTR12A LTR ERVK 1 528 -40 6 1492 255 0 45 0 chr1 118932226 118932270 -78263162 + L1Md_F3 LINE L1 6539 6584 0 6 1492 2101 220 73 41 chr1 118932665 118933173 -78262259 + RLTR28 LTR ERVL 1 524 0 6 1492 2881 75 5 3 chr1 118935097 118935485 -78259947 - L1_Mus2 LINE L1 -2 6564 6176 6 1492 794 144 13 0 chr1 118935486 118935639 -78259793 - Lx LINE L1 -12 6642 6488 6 1492 555 16 0 0 chr1 118935647 118935711 -78259721 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1492 530 319 14 42 chr1 118936137 118936350 -78259082 - MER2 DNA MER2_type -2 343 137 6 1492 676 347 37 15 chr1 118936561 118936833 -78258599 + B4 SINE B4 1 278 -14 6 1492 320 64 0 21 chr1 118936867 118936915 -78258517 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1492 333 0 0 0 chr1 118937842 118937879 -78257553 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1492 580 281 15 0 chr1 118937881 118938016 -78257416 - RSINE1 SINE B4 -26 139 3 6 1492 848 332 4 4 chr1 118938254 118938532 -78256900 - B4A SINE B4 -14 278 1 6 1492 5185 111 29 9 chr1 118938954 118939743 -78255689 - L1Md_F2 LINE L1 -2 6580 5776 6 1492 8831 72 2 2 chr1 118939744 118940905 -78254527 + L1Md_F2 LINE L1 4601 5761 -122 6 1492 8403 70 8 4 chr1 118941257 118943074 -78252358 - L1Md_F2 LINE L1 0 6582 4759 6 1492 490 163 0 11 chr1 118943081 118943098 -78252334 + L1_Mur1 LINE L1 4666 4682 -1204 6 1492 216 0 0 0 chr1 118943098 118943122 -78252310 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 1492 585 80 0 0 chr1 118943122 118943197 -78252235 + L1_Mm LINE L1 4680 4754 -1129 6 1492 1960 157 3 0 chr1 118943723 118944048 -78251384 + ORR1A3 LTR MaLR 1 326 0 6 1492 3289 150 7 25 chr1 118944055 118944617 -78250815 + ORR1A3-int LTR MaLR 9 560 -1403 6 1492 636 194 0 113 chr1 118944610 118944761 -78250671 + MT2B LTR ERVL 157 290 -311 6 1492 387 304 49 0 chr1 118944732 118944834 -78250598 + B1_Mus2 SINE Alu 6 112 -35 6 1492 246 95 0 0 chr1 118944834 118944876 -78250556 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1492 496 343 22 0 chr1 118945102 118945239 -78250193 - RSINE1 SINE B4 -22 143 4 6 1492 526 241 8 25 chr1 118945411 118945530 -78249902 + MT2B LTR ERVL 5 121 -480 6 1492 1468 190 71 13 chr1 118945561 118945813 -78249619 + MT2B LTR ERVL 275 534 -67 6 1492 369 0 0 0 chr1 118945813 118945854 -78249578 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1492 540 42 0 0 chr1 118945854 118945924 -78249508 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1492 1468 190 71 13 chr1 118945924 118945936 -78249496 + MT2B LTR ERVL 535 557 -44 6 1492 429 20 0 0 chr1 118945936 118945986 -78249446 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1492 1468 190 71 13 chr1 118945986 118946028 -78249404 + MT2B LTR ERVL 558 599 -2 6 1492 3197 95 4 8 chr1 118946403 118946891 -78248541 - L1_Mm LINE L1 -472 5411 4926 6 1492 5691 85 2 19 chr1 118946890 118947739 -78247693 + L1_Mus2 LINE L1 5730 6564 -2 6 1492 435 271 48 24 chr1 118948175 118948300 -78247132 - ETnERV2-int LTR ERVK -209 7197 7070 6 1492 331 227 53 0 chr1 118948711 118948786 -78246646 - B3 SINE B2 -137 79 1 6 1492 50 18 0 0 chr1 118949490 118949547 -78245885 + AT_rich Low_complexity Low_complexity 1 57 0 6 1492 312 91 0 0 chr1 118949626 118949670 -78245762 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1492 2026 246 46 73 chr1 118949727 118950262 -78245170 - RMER19C LTR ERVK 0 611 91 6 1492 4850 57 19 2 chr1 118950262 118950857 -78244575 + RLTR1D LTR ERV1 1 605 0 6 1492 2026 246 46 73 chr1 118950857 118950949 -78244483 - RMER19C LTR ERVK -521 90 1 6 1492 593 286 21 7 chr1 118951039 118951180 -78244252 - B1_Mur1 SINE Alu -1 148 6 6 1492 227 300 20 122 chr1 118951081 118951229 -78244203 - MT2B LTR ERVL -341 260 128 6 1492 204 97 0 0 chr1 118951902 118951933 -78243499 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1492 189 0 0 0 chr1 118952265 118952286 -78243146 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1492 243 0 0 0 chr1 118952694 118952721 -78242711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1492 367 344 115 82 chr1 118952737 118952981 -78242451 + B4A SINE B4 3 254 -38 6 1492 636 83 0 0 chr1 118953026 118953122 -78242310 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1492 4338 48 0 7 chr1 118953372 118953913 -78241519 - L1Md_F2 LINE L1 0 6582 6046 6 1492 1966 33 0 0 chr1 118953913 118954157 -78241275 + L1Md_F2 LINE L1 5757 6000 -582 6 1492 23 33 0 0 chr1 118954194 118954224 -78241208 + AT_rich Low_complexity Low_complexity 1 30 0 6 1492 778 275 31 36 chr1 118954239 118954435 -78240997 - B3 SINE B2 -13 203 9 6 1492 482 283 99 36 chr1 118955329 118955582 -78239850 - Lx8 LINE L1 -879 6594 6326 6 1492 659 324 93 0 chr1 118955737 118956219 -78239213 + L1MB8 LINE L1 5419 5945 -233 6 1492 22 0 0 0 chr1 118956282 118956304 -78239128 + AT_rich Low_complexity Low_complexity 1 22 0 6 1492 1582 138 16 48 chr1 118956309 118956621 -78238811 - Lx3B LINE L1 -4 6969 6668 6 1492 217 176 19 19 chr1 118956745 118956797 -78238635 + CT-rich Low_complexity Low_complexity 1 52 0 6 1492 205 247 51 29 chr1 118956913 118957088 -78238344 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 6 1492 215 302 0 0 chr1 118957680 118957733 -78237699 + CT-rich Low_complexity Low_complexity 2 54 0 6 1492 477 351 29 95 chr1 118958212 118958486 -78236946 + B4A SINE B4 20 275 -17 6 1492 238 224 13 118 chr1 118958418 118958494 -78236938 - MLT1F2 LTR MaLR -329 231 164 6 1492 1823 181 47 22 chr1 118958561 118958923 -78236509 - RLTR31B_Mm LTR ERVK 0 557 187 6 1492 545 204 10 182 chr1 118959078 118959270 -78236162 - RLTR23 LTR ERV1 -271 159 1 6 1492 599 297 46 61 chr1 118959608 118959870 -78235562 + B4A SINE B4 8 265 -27 6 1492 392 275 0 48 chr1 118959887 118959971 -78235461 + RSINE1 SINE B4 82 161 -4 6 1492 216 148 18 18 chr1 118960145 118960200 -78235232 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1492 1481 149 64 68 chr1 118960990 118961285 -78234147 + MT2B LTR ERVL 85 378 -223 6 1492 1133 197 40 0 chr1 118961292 118961515 -78233917 - MERVL_2A-int LTR ERVL -802 4959 4728 6 1492 4113 170 28 104 chr1 118961515 118962471 -78232961 + ORR1A3-int LTR MaLR 1080 1963 0 6 1492 702 201 109 77 chr1 118962488 118962671 -78232761 + ORR1A3 LTR MaLR 45 233 -93 6 1492 508 303 101 23 chr1 118963309 118963566 -78231866 + B4A SINE B4 3 279 -13 6 1492 1611 199 69 53 chr1 118964218 118964689 -78230743 - RLTR41 LTR ERV1 0 446 16 6 1492 387 0 0 0 chr1 118965390 118965433 -78229999 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 6 1492 360 177 0 0 chr1 118965441 118965503 -78229929 - B1_Mus2 SINE Alu 0 147 86 6 1492 2216 215 46 78 chr1 118965506 118966318 -78229114 - L1_Mur3 LINE L1 -779 5101 4316 6 1492 6886 82 5 1 chr1 118966327 118967285 -78228147 - L1_Mus2 LINE L1 0 6566 5605 6 1492 2374 130 20 0 chr1 118967282 118967691 -78227741 + L1_Mm LINE L1 3215 3631 -2252 6 1492 22 0 0 0 chr1 118967808 118967830 -78227602 + AT_rich Low_complexity Low_complexity 1 22 0 6 1492 1031 265 67 17 chr1 118968554 118968915 -78226517 - MTEb LTR MaLR 0 379 1 6 1492 591 259 33 161 chr1 118969114 118969383 -78226049 - ORR1E LTR MaLR -2 377 104 6 1492 335 211 26 13 chr1 118969414 118969491 -78225941 - ORR1E LTR MaLR -10 369 292 6 1492 415 257 12 1 chr1 118969494 118969598 -78225834 - ORR1E LTR MaLR -262 108 4 6 1492 330 87 0 0 chr1 118970992 118971038 -78224394 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1492 234 271 34 0 chr1 118971044 118971103 -78224329 - ID4 SINE ID -18 65 5 6 1492 445 257 76 0 chr1 118972092 118972197 -78223235 + B4 SINE B4 104 216 -76 6 1492 26 0 0 0 chr1 118972262 118972288 -78223144 + AT_rich Low_complexity Low_complexity 1 26 0 6 1492 1399 83 15 0 chr1 118972548 118972753 -78222679 - L1_Mus1 LINE L1 -541 6026 5819 6 1492 3406 88 2 0 chr1 118972754 118973232 -78222200 + L1_Mus1 LINE L1 6034 6512 -55 6 1492 3030 40 13 5 chr1 118973335 118973714 -78221718 - L1Md_F3 LINE L1 -1 6583 6202 6 1492 712 206 0 8 chr1 118973995 118974127 -78221305 + B1_Mur3 SINE Alu 18 148 -1 6 1492 902 319 55 44 chr1 118974290 118974699 -78220733 + MTE2a LTR MaLR 1 405 -14 6 1492 780 251 152 12 chr1 118974709 118975032 -78220400 - ORR1D1 LTR MaLR -4 370 3 6 1492 555 56 0 0 chr1 118975688 118975759 -78219673 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1492 914 57 0 0 chr1 118976697 118976820 -78218612 + L1Md_T LINE L1 6460 6582 0 6 1492 180 0 0 0 chr1 118976840 118976860 -78218572 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1492 2837 191 37 10 chr1 118976860 118977485 -78217947 - L1VL2 LINE L1 -5640 695 54 6 1492 1217 35 7 0 chr1 118978832 118978976 -78216456 - B1_Mm SINE Alu -2 145 1 6 1492 2190 58 4 0 chr1 118979316 118979594 -78215838 - L1Md_F2 LINE L1 -12 6570 6292 6 1492 22 0 0 0 chr1 118979745 118979767 -78215665 + AT_rich Low_complexity Low_complexity 1 22 0 6 1492 432 0 0 0 chr1 118980867 118980915 -78214517 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1492 394 276 82 76 chr1 118981257 118981441 -78213991 - B3A SINE B2 -9 186 2 6 1492 21 0 0 0 chr1 118981515 118981536 -78213896 + AT_rich Low_complexity Low_complexity 1 21 0 6 1492 210 271 163 12 chr1 118982011 118982097 -78213335 + B2_Mm2 SINE B2 1 99 -96 6 1492 214 158 0 0 chr1 118982098 118982136 -78213296 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1492 1858 68 68 0 chr1 118982280 118982529 -78212903 + L1_Mus1 LINE L1 6302 6567 0 6 1492 768 129 35 17 chr1 118982942 118983116 -78212316 + GA-rich Low_complexity Low_complexity 2 178 0 6 1492 404 169 0 0 chr1 118983274 118983339 -78212093 - MTEa LTR MaLR -2 377 313 7 1492 421 258 20 10 chr1 118983462 118983560 -78211872 + B3A SINE B2 7 105 -93 7 1492 288 0 0 0 chr1 118984642 118984674 -78210758 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1492 225 65 0 0 chr1 118984674 118984704 -78210728 + (CG)n Simple_repeat Simple_repeat 1 31 0 7 1492 445 358 84 33 chr1 118984744 118984838 -78210594 - B4A SINE B4 -66 226 127 7 1492 197 33 0 32 chr1 118984838 118984869 -78210563 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7 1492 445 358 84 33 chr1 118984869 118984988 -78210444 - B4A SINE B4 -166 126 2 7 1492 2358 166 12 12 chr1 118985015 118985436 -78209996 - Lx4A LINE L1 0 7058 6638 7 1492 871 207 46 0 chr1 118985436 118985610 -78209822 + Lx4A LINE L1 6223 6404 -654 7 1492 2835 39 7 107 chr1 118985610 118986039 -78209393 + RLTR10 LTR ERVK 1 386 -4 7 1492 14669 37 8 35 chr1 118986055 118988021 -78207411 + RLTR10-int LTR ERVK 41 1953 -34 7 1492 1501 182 31 7 chr1 118988021 118988054 -78207378 + Lx4A LINE L1 6361 6393 -665 7 1492 2845 39 7 107 chr1 118988054 118988483 -78206949 + RLTR10 LTR ERVK 1 386 -4 7 1492 1501 201 31 11 chr1 118988483 118988805 -78206627 + Lx4A LINE L1 6371 6691 -359 7 1492 238 304 51 25 chr1 118989226 118989344 -78206088 - MTD LTR MaLR -290 129 9 7 1492 1498 198 32 0 chr1 118989585 118989933 -78205499 + RLTR15 LTR ERVK 1 359 0 7 1492 694 263 52 22 chr1 118990792 118991109 -78204323 + MYSERV-int LTR ERVK 3855 4098 -2452 7 1492 733 269 29 32 chr1 118991244 118991559 -78203873 + MYSERV16_I-int LTR ERVK 244 557 -1769 7 1492 1902 48 68 0 chr1 118991595 118991846 -78203586 + L1Md_F2 LINE L1 6313 6580 -2 7 1492 1005 74 0 0 chr1 118991937 118992072 -78203360 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 7 1492 336 286 63 14 chr1 118992073 118992215 -78203217 + MYSERV-int LTR ERVK 4843 4991 -1559 7 1492 255 182 45 0 chr1 118992227 118992293 -78203139 - Lx2 LINE L1 0 6997 6929 7 1492 1306 222 76 3 chr1 118992294 118992723 -78202709 + MYSERV6-int LTR ERVK 8494 8889 -70 7 1492 1355 250 28 3 chr1 118992731 118993048 -78202384 + RLTR15 LTR ERVK 6 330 -29 7 1492 1607 21 0 0 chr1 118993052 118993244 -78202188 + L1Md_T LINE L1 5395 5586 -297 7 1492 8546 30 0 0 chr1 118993244 118994281 -78201151 + L1Md_T LINE L1 5587 6582 0 7 1492 477 0 0 0 chr1 118994697 118994750 -78200682 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1492 189 0 0 0 chr1 118994750 118994770 -78200662 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1492 452 335 25 65 chr1 118994963 118995164 -78200268 + B3A SINE B2 6 198 0 7 1492 582 178 51 22 chr1 118995324 118995462 -78199970 - RLTR31_Mur LTR ERVK -411 142 1 7 1492 473 71 14 0 chr1 118995735 118995805 -78199627 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1492 521 331 0 0 chr1 118995894 118996027 -78199405 + ID_B1 SINE B4 92 224 0 7 1492 319 256 162 64 chr1 118996057 118996261 -78199171 + ID_B1 SINE B4 1 224 0 7 1492 648 181 0 0 chr1 118996279 118996406 -78199026 + GA-rich Low_complexity Low_complexity 1 127 0 7 1492 1154 67 5 32 chr1 118996406 118996591 -78198841 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 1492 471 123 0 0 chr1 118997918 118997999 -78197433 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1492 450 0 0 0 chr1 118998204 118998254 -78197178 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1492 395 336 59 7 chr1 118998263 118998398 -78197034 - RSINE1 SINE B4 -21 144 3 7 1492 28 48 0 0 chr1 118999868 118999910 -78195522 + AT_rich Low_complexity Low_complexity 1 42 0 7 1492 623 47 0 23 chr1 119000094 119000182 -78195250 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 1 1492 355 346 172 5 chr1 119000182 119000374 -78195058 + ID_B1 SINE B4 1 224 0 2 1492 25 0 0 0 chr1 119002026 119002051 -78193381 + AT_rich Low_complexity Low_complexity 1 25 0 3 1492 295 342 146 22 chr1 119002203 119002388 -78193044 + ID_B1 SINE B4 10 217 -7 4 1492 334 204 11 11 chr1 119003025 119003114 -78192318 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 1492 275 228 0 17 chr1 119003114 119003172 -78192260 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1492 1117 49 0 20 chr1 119003190 119003324 -78192108 + B1_Mm SINE Alu 3 136 -11 7 1492 246 32 0 0 chr1 119003324 119003355 -78192077 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1492 1117 49 0 20 chr1 119003355 119003366 -78192066 + B1_Mm SINE Alu 137 145 -2 7 1492 568 361 109 4 chr1 119003373 119003629 -78191803 + B4A SINE B4 1 283 -9 9 1492 228 278 14 0 chr1 119003647 119003719 -78191713 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1492 250 183 17 0 chr1 119003879 119003960 -78191472 + T-rich Low_complexity Low_complexity 1 82 0 1 1492 683 263 14 116 chr1 119004413 119004591 -78190841 + B3A SINE B2 1 170 -28 1 1492 315 0 0 0 chr1 119004591 119004626 -78190806 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1492 469 263 14 116 chr1 119004626 119004662 -78190770 + B2_Mm2 SINE B2 162 193 -2 1 1492 207 152 0 0 chr1 119005464 119005510 -78189922 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1 1492 25 0 0 0 chr1 119005813 119005838 -78189594 + AT_rich Low_complexity Low_complexity 1 25 0 1 1492 440 338 70 7 chr1 119005926 119006069 -78189363 + RSINE1 SINE B4 4 155 -10 1 1492 21 95 0 0 chr1 119006587 119006650 -78188782 + AT_rich Low_complexity Low_complexity 1 63 0 1 1492 321 313 132 18 chr1 119006993 119007159 -78188273 + Lx8 LINE L1 7000 7184 -289 1 1492 264 243 86 29 chr1 119007202 119007342 -78188090 + Lx8 LINE L1 7324 7471 -2 1 1492 21 0 0 0 chr1 119008486 119008507 -78186925 + AT_rich Low_complexity Low_complexity 1 21 0 1 1492 248 297 42 8 chr1 119008704 119008823 -78186609 + L1_Rod LINE L1 5532 5654 -193 2 1492 278 262 37 0 chr1 119009710 119009817 -78185615 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1492 349 356 8 17 chr1 119009983 119010103 -78185329 + MTE2b LTR MaLR 23 141 -238 2 1492 272 143 0 18 chr1 119011066 119011123 -78184309 + (TTTG)n Simple_repeat Simple_repeat 3 58 0 2 1492 654 296 53 5 chr1 119011128 119011318 -78184114 - ID_B1 SINE B4 -20 204 6 2 1492 21 0 0 0 chr1 119011581 119011602 -78183830 + AT_rich Low_complexity Low_complexity 1 21 0 2 1492 524 353 52 54 chr1 119011687 119012084 -78183348 + MT2A LTR ERVL 83 479 -54 2 1492 230 396 26 13 chr1 119012084 119012235 -78183197 + RSINE1 SINE B4 1 153 -12 2 1492 524 353 52 54 chr1 119012235 119012280 -78183152 + MT2A LTR ERVL 480 524 -9 2 1492 180 250 0 0 chr1 119012911 119012959 -78182473 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2 1492 453 62 0 0 chr1 119012963 119013028 -78182404 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1492 674 305 9 18 chr1 119013135 119013352 -78182080 + B3 SINE B2 1 215 -1 3 186 840 40 0 0 chr1 119013352 119013453 -78181979 + L1Md_F2 LINE L1 6135 6235 -347 3 1493 520 321 151 8 chr1 119013571 119013816 -78181616 - B4A SINE B4 -4 288 9 3 1493 291 130 0 0 chr1 119013826 119013880 -78181552 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1493 267 214 14 28 chr1 119013880 119013952 -78181480 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1493 770 362 14 33 chr1 119014965 119015325 -78180107 + ORR1E LTR MaLR 1 353 -6 3 1493 411 221 0 0 chr1 119015363 119015485 -78179947 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1493 235 337 41 31 chr1 119016493 119016591 -78178841 - B3 SINE B2 -6 210 112 3 1493 189 0 0 0 chr1 119016853 119016874 -78178558 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1493 221 245 20 0 chr1 119016882 119016931 -78178501 + GA-rich Low_complexity Low_complexity 1 50 0 3 1493 32 57 0 0 chr1 119016962 119017015 -78178417 + AT_rich Low_complexity Low_complexity 1 53 0 4 1493 402 74 0 0 chr1 119017672 119017726 -78177706 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1493 180 111 0 0 chr1 119017731 119017758 -78177674 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1493 333 47 0 0 chr1 119017914 119017957 -78177475 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1493 280 186 141 14 chr1 119018884 119018955 -78176477 - ID_B1 SINE B4 -5 219 140 4 1493 276 374 60 95 chr1 119019973 119020257 -78175175 + B4 SINE B4 16 289 -3 4 1493 919 346 3 11 chr1 119020677 119020963 -78174469 + B4 SINE B4 8 291 -1 4 1493 244 254 59 15 chr1 119021111 119021179 -78174253 + MER82 DNA MER2_type 115 185 -468 4 1493 555 291 35 0 chr1 119021723 119021864 -78173568 + B3A SINE B2 9 154 -44 4 1493 321 26 0 0 chr1 119021864 119021902 -78173530 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1493 4475 74 0 3 chr1 119021988 119022569 -78172863 - L1_Mus4 LINE L1 -471 6165 5587 5 1493 3037 98 32 15 chr1 119022569 119023035 -78172397 + L1_Mus4 LINE L1 6158 6631 -5 5 1493 227 314 14 14 chr1 119023045 119023116 -78172316 + MIRc SINE MIR 44 114 -154 5 1493 784 254 117 4 chr1 119023463 119023712 -78171720 + B4 SINE B4 4 280 -12 5 1493 342 283 70 10 chr1 119023712 119023812 -78171620 - B4 SINE B4 -184 108 3 5 1493 192 341 59 35 chr1 119024195 119024280 -78171152 - MIRb SINE MIR -157 111 25 5 1493 345 386 13 0 chr1 119024818 119024976 -78170456 - RSINE1 SINE B4 -4 161 2 5 1493 576 303 203 49 chr1 119025105 119025775 -78169657 - RMER1C Other Other -35 1307 535 5 1493 592 353 55 11 chr1 119026136 119026411 -78169021 - B4 SINE B4 -4 288 2 5 1493 460 286 105 47 chr1 119026438 119026723 -78168709 - L1MC3 LINE L1 -68 7717 7418 5 1493 1936 111 98 3 chr1 119026723 119027048 -78168384 + Lx LINE L1 6293 6648 -6 5 1493 460 286 105 47 chr1 119027048 119027209 -78168223 - L1MC3 LINE L1 -368 7417 7245 5 1493 359 337 45 60 chr1 119027394 119027593 -78167839 - B3A SINE B2 -2 196 1 6 1493 2803 169 60 4 chr1 119027652 119028156 -78167276 - Lx4A LINE L1 -330 6728 6197 6 1493 7658 119 19 9 chr1 119028154 119029777 -78165655 - MusHAL1 LINE L1 -1391 1962 325 6 1493 821 89 145 0 chr1 119030376 119030500 -78164932 - B1_Mus1 SINE Alu -6 142 1 6 1493 394 315 60 53 chr1 119030622 119030773 -78164659 + MTEa LTR MaLR 1 152 -227 6 1493 2566 190 68 17 chr1 119030874 119031415 -78164017 - RMER4B LTR ERVK 0 585 17 6 1493 271 182 0 132 chr1 119031655 119031731 -78163701 + MTEa LTR MaLR 269 334 -45 6 1493 24 0 0 0 chr1 119031912 119031936 -78163496 + AT_rich Low_complexity Low_complexity 1 24 0 6 1493 247 326 0 0 chr1 119032033 119032128 -78163304 + (TATG)n Simple_repeat Simple_repeat 4 98 0 6 1493 403 261 36 9 chr1 119032266 119032378 -78163054 + B4 SINE B4 159 273 -19 6 1493 620 207 311 0 chr1 119032753 119032917 -78162515 + B3 SINE B2 1 215 -1 6 1493 441 0 0 0 chr1 119032924 119032973 -78162459 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1493 787 301 47 16 chr1 119032979 119033255 -78162177 - B4A SINE B4 -3 289 2 7 1493 600 316 127 13 chr1 119033401 119033638 -78161794 + B4A SINE B4 27 290 -2 7 1493 243 0 0 0 chr1 119034233 119034260 -78161172 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 7 1493 955 139 0 32 chr1 119034260 119034446 -78160986 + CT-rich Low_complexity Low_complexity 1 180 0 7 1493 10590 50 1 1 chr1 119034588 119035915 -78159517 + L1Md_F3 LINE L1 4259 5586 -297 7 1493 8050 43 3 1 chr1 119035915 119037051 -78158381 + L1Md_F3 LINE L1 5587 6584 0 7 1493 232 371 42 25 chr1 119037212 119037331 -78158101 - B4A SINE B4 -117 175 55 7 1493 606 337 112 40 chr1 119037627 119038146 -78157286 - L1_Rod LINE L1 -1 5846 5299 7 1493 703 295 64 10 chr1 119038146 119038348 -78157084 - B3 SINE B2 0 216 4 7 1493 606 318 112 48 chr1 119038348 119038986 -78156446 - L1_Rod LINE L1 -549 5298 4663 7 1493 856 195 94 35 chr1 119039647 119039849 -78155583 - B3 SINE B2 -1 215 2 7 1493 702 308 54 11 chr1 119040698 119040977 -78154455 - B4 SINE B4 0 292 2 8 1493 403 306 102 29 chr1 119041093 119041614 -78153818 + L1MA8 LINE L1 5733 6291 0 8 1493 295 189 0 0 chr1 119041618 119041671 -78153761 - MTE2a LTR MaLR -4 375 323 8 1493 472 181 9 0 chr1 119041671 119041776 -78153656 + Lx LINE L1 6549 6654 0 8 1493 557 256 67 32 chr1 119041821 119041992 -78153440 - MTE2a LTR MaLR -54 325 151 8 1493 41 72 0 0 chr1 119042053 119042136 -78153296 + AT_rich Low_complexity Low_complexity 1 83 0 8 1493 450 0 0 0 chr1 119042644 119042694 -78152738 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1493 234 0 0 0 chr1 119042707 119042733 -78152699 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1493 366 321 95 0 chr1 119042754 119042891 -78152541 - B3A SINE B2 -48 150 1 8 1493 277 372 60 71 chr1 119042894 119043247 -78152185 - Charlie2b DNA MER1_type -1842 940 592 8 1493 301 369 65 22 chr1 119043540 119043825 -78151607 - B4 SINE B4 0 292 8 8 1493 1281 279 24 0 chr1 119043952 119044250 -78151182 - MTE2b LTR MaLR 0 379 75 9 1493 409 322 133 38 chr1 119044746 119045166 -78150266 - L1M5 LINE L1 -2930 3216 2757 9 1493 555 243 36 21 chr1 119045388 119045520 -78149912 + ORR1E LTR MaLR 3 134 -225 9 1493 585 352 39 22 chr1 119046425 119046637 -78148795 + B3A SINE B2 7 207 -9 9 1493 1875 225 178 23 chr1 119046727 119047290 -78148142 - RMER19A LTR ERVK -2 735 86 9 1493 7343 164 41 18 chr1 119047290 119047385 -78148047 - Lx2B LINE L1 -23 6977 6883 9 1493 225 0 0 0 chr1 119047385 119047410 -78148022 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 9 1493 7343 172 41 16 chr1 119047410 119048864 -78146568 - Lx2B LINE L1 -118 6882 5400 9 1493 3077 61 5 5 chr1 119048870 119049266 -78146166 - MTA_Mm LTR MaLR 0 396 1 9 1493 5074 106 30 8 chr1 119049266 119050059 -78145373 - MTA_Mm-int LTR MaLR 0 1098 288 9 1493 28 48 0 0 chr1 119050059 119050101 -78145331 + AT_rich Low_complexity Low_complexity 1 42 0 9 1493 855 131 0 35 chr1 119050163 119050306 -78145126 - L1_Mur2 LINE L1 -2309 3568 3431 9 1493 381 75 0 0 chr1 119050419 119050472 -78144960 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1493 679 325 77 98 chr1 119050498 119050795 -78144637 - B4 SINE B4 0 292 2 1 1493 7091 241 55 57 chr1 119051126 119052665 -78142767 - Lx7 LINE L1 -4 7692 6181 1 1493 2141 57 3 11 chr1 119052665 119052948 -78142484 - L1Md_F2 LINE L1 -3 6579 6299 1 1493 7091 250 31 54 chr1 119052948 119054184 -78141248 - Lx7 LINE L1 -1516 6180 4969 1 1493 354 380 19 39 chr1 119054331 119054487 -78140945 + RSINE1 SINE B4 13 165 0 1 1493 2941 55 8 33 chr1 119054733 119055131 -78140301 - RLTR10 LTR ERVK -2 388 1 1 1493 638 73 0 0 chr1 119055221 119055317 -78140115 - L1_Mus2 LINE L1 0 6566 6471 1 1493 1862 44 0 0 chr1 119055317 119055542 -78139890 + L1_Mus2 LINE L1 6213 6437 -130 1 1493 798 293 13 21 chr1 119055628 119055865 -78139567 - Lx7 LINE L1 -875 6821 6587 1 1493 1468 236 67 31 chr1 119055857 119056303 -78139129 + L1_Mur3 LINE L1 5416 5877 -3 1 1493 1024 338 30 0 chr1 119056435 119056766 -78138666 - MTE2b LTR MaLR -38 341 1 1 1493 1828 191 38 38 chr1 119056789 119057181 -78138251 + ORR1B1 LTR MaLR 3 394 0 1 1493 5565 216 70 16 chr1 119057181 119058609 -78136823 + ORR1B1-int LTR MaLR 1 1505 -4 1 1493 1770 197 64 16 chr1 119058612 119058988 -78136444 + ORR1B1 LTR MaLR 1 394 0 1 1493 23 92 0 0 chr1 119059173 119059238 -78136194 + AT_rich Low_complexity Low_complexity 1 65 0 1 1493 682 194 83 0 chr1 119059977 119060121 -78135311 - MYSERV16_I-int LTR ERVK -2029 297 142 1 1493 231 114 0 0 chr1 119060121 119060156 -78135276 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1493 417 20 0 0 chr1 119060898 119060948 -78134484 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1493 282 269 0 28 chr1 119060958 119061065 -78134367 + T-rich Low_complexity Low_complexity 4 107 0 1 1493 2158 229 72 38 chr1 119061080 119061775 -78133657 - Lx2B LINE L1 -49 7009 6197 1 1493 8018 24 0 2 chr1 119062266 119063807 -78131625 - L1Md_T LINE L1 -1 6581 5045 1 1493 26102 39 0 0 chr1 119063799 119068546 -78126886 + L1Md_Gf LINE L1 1 4671 -1215 1 1493 627 315 59 5 chr1 119070087 119070307 -78125125 - MTEa LTR MaLR -78 301 70 1 1493 278 273 0 0 chr1 119070757 119070834 -78124598 + RLTR6-int LTR ERV1 4979 5055 -2723 1 1493 415 125 25 0 chr1 119070990 119071070 -78124362 + L1_Mur2 LINE L1 3499 3580 -2297 1 1493 2066 163 7 19 chr1 119071067 119071492 -78123940 + L1_Mur2 LINE L1 4091 4510 -1367 1 1493 306 306 9 18 chr1 119071497 119071607 -78123825 - Lx9 LINE L1 -358 7286 7178 1 1493 694 328 17 43 chr1 119071667 119071967 -78123465 - B4 SINE B4 0 292 1 1 1493 7758 40 6 3 chr1 119072569 119073867 -78121565 - L1Md_F2 LINE L1 -14 6568 5269 1 1493 1253 290 112 6 chr1 119073865 119074354 -78121078 - Lx8 LINE L1 -561 6912 6372 1 1493 686 44 11 0 chr1 119074399 119074489 -78120943 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1 1493 474 155 178 0 chr1 119074624 119074753 -78120679 - RMER17B LTR ERVK -495 463 312 1 1493 977 355 56 81 chr1 119074826 119075876 -78119556 - L1M4 LINE L1 -5292 1250 227 1 1493 333 0 0 0 chr1 119077225 119077262 -78118170 + (TAG)n Simple_repeat Simple_repeat 1 37 0 1 1493 342 373 70 51 chr1 119077296 119077454 -78117978 - RSINE1 SINE B4 -2 163 3 1 1493 243 0 0 0 chr1 119077885 119077912 -78117520 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1 1493 1571 246 68 8 chr1 119078286 119078588 -78116844 - MTC LTR MaLR -13 408 85 1 1493 819 109 0 21 chr1 119078588 119078728 -78116704 - L1Md_F2 LINE L1 -3 6579 6443 1 1493 1571 246 68 8 chr1 119078728 119078810 -78116622 - MTC LTR MaLR -337 84 3 1 1493 785 242 203 55 chr1 119078814 119079273 -78116159 + RLTR40 LTR ERVK 1 527 -290 1 1493 3318 261 30 62 chr1 119079270 119080257 -78115175 - MTD-int LTR MaLR -300 958 3 1 1493 1516 253 77 5 chr1 119080262 119080651 -78114781 - MTD LTR MaLR 0 419 3 1 1493 195 162 0 0 chr1 119081118 119081155 -78114277 + CT-rich Low_complexity Low_complexity 1 37 0 1 1493 185 268 137 27 chr1 119081363 119081436 -78113996 - MIRb SINE MIR -142 126 46 1 1493 232 352 70 54 chr1 119082107 119082365 -78113067 + MER110 LTR ERV1 23 284 -207 1 1493 574 228 55 0 chr1 119082399 119082526 -78112906 + B1_Mm SINE Alu 9 142 -5 1 1493 1063 317 27 30 chr1 119082605 119082976 -78112456 + ORR1D2 LTR MaLR 1 370 0 1 1493 1559 227 144 41 chr1 119083464 119083956 -78111476 - ORR1B1-int LTR MaLR -383 1126 584 1 1493 2367 71 32 9 chr1 119084243 119084582 -78110850 - L1Md_F2 LINE L1 -23 6559 6213 1 1493 21 0 0 0 chr1 119084922 119084943 -78110489 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 26 74 0 0 chr1 119085182 119085236 -78110196 + AT_rich Low_complexity Low_complexity 1 54 0 1 1493 943 86 72 24 chr1 119085343 119085510 -78109922 + L1_Mus3 LINE L1 6464 6638 0 1 1493 464 330 107 71 chr1 119085583 119085864 -78109568 - B4A SINE B4 0 292 2 1 1493 261 0 0 0 chr1 119085939 119085968 -78109464 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1493 652 297 64 34 chr1 119086011 119086276 -78109156 + RMER5 LTR ERV1 44 316 -218 1 1493 337 278 177 20 chr1 119086294 119086441 -78108991 + RMER5 LTR ERV1 365 534 0 1 1493 3524 172 25 0 chr1 119087283 119087892 -78107540 + Lx4A LINE L1 6433 7056 -2 1 1493 25 0 0 0 chr1 119087892 119087917 -78107515 + AT_rich Low_complexity Low_complexity 1 25 0 1 1493 3014 193 56 6 chr1 119088070 119088712 -78106720 + RLTR33 LTR ERVK 1 674 -4 1 1493 353 214 19 58 chr1 119089737 119089841 -78105591 + RMER12 LTR ERVK 751 850 -472 1 1493 342 45 0 0 chr1 119089879 119089923 -78105509 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1493 242 205 50 25 chr1 119090071 119090151 -78105281 + (TCTG)n Simple_repeat Simple_repeat 3 84 0 1 1493 527 283 63 48 chr1 119090162 119090196 -78105236 - B3A SINE B2 -6 192 162 1 1493 732 92 0 0 chr1 119090196 119090315 -78105117 + (TC)n Simple_repeat Simple_repeat 2 120 0 1 1493 414 0 0 0 chr1 119090315 119090360 -78105072 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1493 527 283 63 48 chr1 119090360 119090513 -78104919 - B3A SINE B2 -37 161 2 1 1493 1020 275 12 47 chr1 119090945 119091558 -78103874 + Lx9 LINE L1 7063 7643 -1 1 1493 4024 171 99 33 chr1 119091785 119092762 -78102670 + RLTR25A LTR ERVK 23 1028 0 1 1493 323 330 81 72 chr1 119093159 119093381 -78102051 - B4 SINE B4 -66 226 3 1 1493 4198 127 53 38 chr1 119093546 119093820 -78101612 + RMER17D2 LTR ERVK 4 270 -539 1 1493 5059 43 3 0 chr1 119093820 119094421 -78101011 - L1Md_F2 LINE L1 -1 6581 5979 1 1493 4198 127 53 38 chr1 119094421 119094940 -78100492 + RMER17D2 LTR ERVK 271 809 0 1 1493 318 148 0 0 chr1 119095424 119095478 -78099954 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1493 29 0 0 0 chr1 119095684 119095713 -78099719 + AT_rich Low_complexity Low_complexity 1 29 0 1 1493 294 50 0 0 chr1 119096703 119096743 -78098689 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1493 2245 214 104 11 chr1 119097016 119097488 -78097944 + RMER20A LTR ERVK 1 516 0 1 1493 384 22 0 0 chr1 119097716 119097761 -78097671 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1493 5612 163 21 18 chr1 119098045 119099684 -78095748 + L1VL4 LINE L1 718 2342 -1570 1 1493 284 64 0 21 chr1 119099684 119099732 -78095700 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 1 1493 2242 56 101 39 chr1 119099733 119100069 -78095363 + L1Md_F2 LINE L1 6213 6569 -13 1 1493 5612 155 27 16 chr1 119100069 119100138 -78095294 + L1VL4 LINE L1 2343 2412 -1500 1 1493 697 236 17 6 chr1 119100142 119100321 -78095111 + Lx2B LINE L1 6795 6975 -25 1 1493 413 76 25 25 chr1 119100321 119100402 -78095030 + (TAA)n Simple_repeat Simple_repeat 2 82 0 1 1493 366 214 0 0 chr1 119100467 119100537 -78094895 - ORR1A3 LTR MaLR 0 326 257 1 1493 33417 75 12 9 chr1 119100539 119105880 -78089552 + L1Md_F3 LINE L1 220 5589 -297 1 1493 7811 52 3 0 chr1 119105880 119106860 -78088572 + L1Md_F3 LINE L1 5590 6572 -15 1 1493 1404 210 85 31 chr1 119106865 119107184 -78088248 - ORR1B1 LTR MaLR -58 336 1 1 1493 695 300 78 22 chr1 119107798 119108067 -78087365 + B4 SINE B4 1 284 -8 1 1493 372 22 0 0 chr1 119108105 119108150 -78087282 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1493 30 0 0 0 chr1 119108278 119108308 -78087124 + AT_rich Low_complexity Low_complexity 1 30 0 1 1493 371 316 7 7 chr1 119109303 119109440 -78085992 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1493 455 355 120 5 chr1 119109443 119109627 -78085805 - B4A SINE B4 -2 290 86 1 1493 21 0 0 0 chr1 119109679 119109700 -78085732 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 6491 119 2 3 chr1 119109711 119110718 -78084714 - L1_Mus4 LINE L1 -13 6623 5618 1 1493 660 174 16 0 chr1 119110718 119110839 -78084593 + RLTR12A LTR ERVK 440 562 -6 1 1493 401 203 14 0 chr1 119110924 119110998 -78084434 - ID_B1 SINE B4 -1 223 149 1 1493 257 340 70 0 chr1 119110998 119111024 -78084408 - B1_Mm SINE Alu -1 146 40 1 1493 3871 179 28 12 chr1 119111025 119111083 -78084349 - L1_Mus3 LINE L1 -591 5292 5237 1 1493 315 0 0 0 chr1 119111083 119111118 -78084314 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1493 3871 179 28 12 chr1 119111118 119111861 -78083571 - L1_Mus3 LINE L1 -647 5236 4482 1 1493 585 0 0 0 chr1 119111861 119111926 -78083506 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1493 3871 179 28 12 chr1 119111926 119111960 -78083472 - L1_Mus3 LINE L1 -1402 4481 4443 1 1493 22763 128 12 24 chr1 119111941 119113624 -78081808 - L1_Mus3 LINE L1 0 6638 4924 1 1493 970 87 51 0 chr1 119113624 119113762 -78081670 + B1_Mus2 SINE Alu 1 145 -2 1 1493 22763 161 13 52 chr1 119113762 119115765 -78079667 - L1_Mus3 LINE L1 -960 4923 3143 1 1493 1062 58 0 0 chr1 119115765 119115903 -78079529 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 1 1493 22763 160 11 44 chr1 119115903 119118327 -78077105 - L1_Mus3 LINE L1 -2741 3142 719 1 1493 321 89 0 0 chr1 119118487 119118532 -78076900 + (GGA)n Simple_repeat Simple_repeat 3 47 0 1 1493 1381 181 13 0 chr1 119119838 119120076 -78075356 + ORR1B1 LTR MaLR 154 394 0 1 1493 495 323 69 54 chr1 119120666 119121000 -78074432 + MER119 DNA MER1_type 203 541 -42 1 1493 1690 20 0 0 chr1 119121000 119121198 -78074234 + L1_Mus1 LINE L1 6370 6567 0 1 1493 2013 137 27 25 chr1 119121237 119121604 -78073828 - RLTR9A LTR ERVK 0 368 1 1 1493 456 287 48 16 chr1 119121604 119121728 -78073704 + RSINE1 SINE B4 18 145 -20 1 1493 26 30 0 0 chr1 119121767 119121800 -78073632 + AT_rich Low_complexity Low_complexity 1 33 0 1 1493 279 343 47 9 chr1 119121987 119122093 -78073339 + B4A SINE B4 178 287 -5 1 1493 384 22 0 0 chr1 119122112 119122157 -78073275 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1493 334 380 39 50 chr1 119122537 119122795 -78072637 + B4 SINE B4 20 274 -18 2 1493 22 0 0 0 chr1 119122834 119122856 -78072576 + AT_rich Low_complexity Low_complexity 1 22 0 2 1493 255 330 25 57 chr1 119123066 119123188 -78072244 - AmnSINE1 SINE SINE -167 408 291 2 1493 23 0 0 0 chr1 119123497 119123520 -78071912 + AT_rich Low_complexity Low_complexity 1 23 0 2 1493 455 339 36 5 chr1 119123639 119123832 -78071600 - RMER15 LTR ERVL 0 575 377 2 1493 285 200 43 0 chr1 119124399 119124467 -78070965 + ID_B1 SINE B4 17 92 -200 2 1493 200 349 0 12 chr1 119124550 119124634 -78070798 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1493 7336 51 10 1 chr1 119124895 119125904 -78069528 + L1Md_F3 LINE L1 5587 6584 0 2 1493 1157 132 26 5 chr1 119126265 119126456 -78068976 + B2_Mm2 SINE B2 1 195 0 2 1493 342 297 171 53 chr1 119127017 119127543 -78067889 - L1MC5 LINE L1 -499 7462 6875 2 1493 34299 50 9 4 chr1 119128386 119133681 -78061751 + L1Md_T LINE L1 307 5586 -297 2 1493 8365 35 0 1 chr1 119133681 119134678 -78060754 + L1Md_T LINE L1 5587 6582 0 2 1493 252 77 0 0 chr1 119135946 119135985 -78059447 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1493 527 349 24 28 chr1 119136058 119136306 -78059126 + B4 SINE B4 1 247 -45 2 1493 225 220 0 39 chr1 119136297 119136349 -78059083 + B3A SINE B2 9 58 -140 2 1493 264 305 0 0 chr1 119136462 119136521 -78058911 + B4 SINE B4 226 284 -8 2 1493 248 87 22 0 chr1 119136524 119136559 -78058873 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1493 1179 74 6 11 chr1 119136559 119136737 -78058695 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 2 1493 248 87 22 0 chr1 119136737 119136747 -78058685 + (GA)n Simple_repeat Simple_repeat 1 11 0 2 1493 2950 79 2 8 chr1 119136939 119137335 -78058097 - MTA_Mm LTR MaLR 0 396 3 2 1493 279 377 39 21 chr1 119137774 119138053 -78057379 + B4A SINE B4 3 286 -6 2 1493 459 0 0 0 chr1 119138145 119138196 -78057236 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2 1493 616 331 7 0 chr1 119138600 119138748 -78056684 + RSINE1 SINE B4 9 157 -8 2 1493 609 14 0 0 chr1 119138867 119138937 -78056495 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1493 596 345 25 69 chr1 119138950 119139119 -78056313 - B4A SINE B4 -22 270 105 2 1493 5337 84 8 4 chr1 119139119 119139851 -78055581 + L1_Mus3 LINE L1 5903 6637 -1 2 1493 596 345 25 69 chr1 119139851 119139955 -78055477 - B4A SINE B4 -188 104 9 2 1493 226 407 31 67 chr1 119140725 119140949 -78054483 - B4 SINE B4 -75 217 2 2 1493 327 25 0 0 chr1 119142054 119142094 -78053338 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1493 315 217 36 0 chr1 119142100 119142183 -78053249 - Lx7 LINE L1 -5 7691 7606 2 1493 540 130 0 0 chr1 119142218 119142333 -78053099 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1493 558 237 34 0 chr1 119142494 119142612 -78052820 + RSINE1 SINE B4 5 126 -39 2 1493 417 288 55 55 chr1 119142637 119142857 -78052575 - RMER15 LTR ERVL -20 555 336 2 1493 241 351 0 11 chr1 119143561 119143656 -78051776 + RMER13B LTR ERVK 93 186 -722 2 1493 495 48 0 0 chr1 119143811 119143873 -78051559 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 186 3396 28 5 0 chr1 119144170 119144564 -78050868 + MTA_Mm LTR MaLR 1 396 0 2 1494 487 275 114 28 chr1 119145053 119145229 -78050203 + B3A SINE B2 2 192 -6 2 1494 2871 71 0 2 chr1 119145248 119145656 -78049776 - L1_Mur1 LINE L1 -1538 4348 3942 2 1494 8606 99 26 4 chr1 119145654 119147115 -78048317 + Lx3A LINE L1 5471 6971 -10 2 1494 433 256 41 0 chr1 119147349 119147470 -78047962 + Lx8 LINE L1 6797 6922 -551 2 1494 307 429 0 35 chr1 119147688 119147862 -78047570 - LTR33A_ LTR ERVL -318 213 46 2 1494 1938 134 59 0 chr1 119148055 119148361 -78047071 + ORR1A3 LTR MaLR 3 326 0 2 1494 244 290 0 16 chr1 119148370 119148433 -78046999 - RLTR23 LTR ERV1 -262 168 107 2 1494 38 22 0 0 chr1 119148775 119148820 -78046612 + AT_rich Low_complexity Low_complexity 1 45 0 2 1494 682 171 51 0 chr1 119150019 119150157 -78045275 + RMER6D LTR ERVK 1 216 -474 2 1494 34751 71 2 25 chr1 119150158 119156477 -78038955 + L1Md_T LINE L1 99 5586 -297 2 1494 7999 58 0 0 chr1 119156477 119157538 -78037894 + L1Md_T LINE L1 5587 6582 0 2 1494 697 207 28 25 chr1 119157538 119157769 -78037663 + RMER6D LTR ERVK 204 433 -257 2 1494 21616 161 31 6 chr1 119157908 119161866 -78033566 - Lx LINE L1 0 6654 2650 2 1494 198 0 0 0 chr1 119161866 119161888 -78033544 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2 1494 21616 172 35 8 chr1 119161888 119162790 -78032642 - Lx LINE L1 -3234 2649 1698 2 1494 234 0 0 0 chr1 119162790 119162816 -78032616 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1494 21616 151 175 6 chr1 119162816 119163724 -78031708 - Lx LINE L1 -4186 1697 599 2 1494 28 0 0 0 chr1 119164370 119164398 -78031034 + AT_rich Low_complexity Low_complexity 1 28 0 2 1494 1485 257 9 52 chr1 119164398 119164837 -78030595 + MTC LTR MaLR 2 421 0 2 1494 297 372 71 13 chr1 119164967 119165122 -78030310 - RSINE1 SINE B4 0 165 2 2 1494 200 203 0 68 chr1 119165225 119165299 -78030133 + (TTTA)n Simple_repeat Simple_repeat 4 72 0 2 1494 346 284 50 2 chr1 119165537 119165719 -78029713 + L1MA4A LINE L1 5708 5899 -398 2 1494 1735 145 76 3 chr1 119165720 119166010 -78029422 - RLTR10E LTR ERVK 0 311 1 2 1494 2810 101 0 12 chr1 119168874 119169284 -78026148 - L1Md_F2 LINE L1 -12 6570 6166 2 1494 3659 67 10 0 chr1 119169284 119169774 -78025658 + L1Md_F2 LINE L1 5711 6205 -377 2 1494 212 77 26 0 chr1 119170558 119170597 -78024835 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1494 336 300 45 30 chr1 119170732 119170866 -78024566 + RMER15 LTR ERVL 336 471 -104 2 1494 1470 85 0 19 chr1 119171414 119171629 -78023803 + L1Md_F2 LINE L1 6360 6570 -12 2 1494 260 135 0 0 chr1 119173405 119173442 -78021990 + B1_Mm SINE Alu 103 139 -8 2 1494 279 336 61 55 chr1 119174091 119174645 -78020787 + RLTR6-int LTR ERV1 1317 1974 -5804 2 1494 908 317 25 16 chr1 119174746 119175188 -78020244 + RLTR6-int LTR ERV1 2692 3137 -4641 2 1494 3155 238 132 33 chr1 119175207 119176951 -78018481 + Lx5 LINE L1 4890 7062 -398 2 1494 238 238 92 35 chr1 119176976 119177063 -78018369 - RMER15 LTR ERVL -52 523 432 2 1494 367 250 0 0 chr1 119177457 119177553 -78017879 - MER57A-int LTR ERV1 -271 5916 5821 2 1494 240 159 114 0 chr1 119177721 119177765 -78017667 - ID_B1 SINE B4 -9 215 167 2 1494 234 0 0 0 chr1 119177919 119177945 -78017487 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1494 378 0 0 0 chr1 119178122 119178164 -78017268 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1494 204 200 0 0 chr1 119179097 119179167 -78016265 + A-rich Low_complexity Low_complexity 1 70 0 2 1494 21 82 0 0 chr1 119179620 119179669 -78015763 + AT_rich Low_complexity Low_complexity 1 49 0 2 1494 21 36 0 0 chr1 119180163 119180191 -78015241 + AT_rich Low_complexity Low_complexity 1 28 0 2 1494 1847 169 180 37 chr1 119180195 119180706 -78014726 + RLTR31A_Mm LTR ERVK 1 584 0 2 1494 183 78 29 59 chr1 119180888 119180956 -78014476 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 2 1494 316 382 80 43 chr1 119181232 119181508 -78013924 - B4A SINE B4 -6 286 1 2 1494 468 0 0 0 chr1 119181525 119181577 -78013855 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1494 2249 56 0 3 chr1 119181995 119182281 -78013151 - L1Md_F3 LINE L1 0 6584 6300 2 1494 383 42 54 27 chr1 119182662 119182736 -78012696 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 2 1494 344 345 61 30 chr1 119183026 119183256 -78012176 + ORR1E LTR MaLR 2 238 -121 2 1494 456 276 66 80 chr1 119183521 119183734 -78011698 + RMER15 LTR ERVL 352 561 -14 2 1494 510 304 37 18 chr1 119184434 119184598 -78010834 + B4 SINE B4 2 168 -124 2 1494 644 252 204 36 chr1 119184693 119185002 -78010430 + RLTR9A LTR ERVK 1 361 -7 2 1494 3880 118 16 6 chr1 119185151 119185773 -78009659 + RLTR5_Mm LTR ERV1 1 628 0 2 1494 486 0 0 0 chr1 119186037 119186091 -78009341 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1494 6044 141 101 18 chr1 119186091 119187294 -78008138 + RMER16-int LTR ERVK 263 1566 -3840 2 1494 500 298 19 0 chr1 119187378 119187536 -78007896 + RMER16-int LTR ERVK 1415 1575 -1739 2 1494 272 260 74 63 chr1 119187606 119187795 -78007637 + RMER16-int LTR ERVK 2165 2355 -3812 2 1494 3997 126 11 8 chr1 119187833 119188485 -78006947 + RMER16-int LTR ERVK 1566 2739 -4667 2 1494 4380 120 16 19 chr1 119188477 119189217 -78006215 + RMER16-int LTR ERVK 3601 4338 -1068 2 1494 540 304 38 11 chr1 119189214 119189477 -78005955 + RLTR6-int LTR ERV1 7389 7658 -120 2 1494 550 236 212 48 chr1 119189843 119190159 -78005273 + RLTR9A LTR ERVK 1 368 0 2 1494 486 159 0 0 chr1 119190708 119190796 -78004636 + (TA)n Simple_repeat Simple_repeat 1 88 0 2 1494 369 0 0 0 chr1 119191083 119191124 -78004308 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1494 288 0 0 0 chr1 119191170 119191202 -78004230 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1494 676 332 22 31 chr1 119191224 119191451 -78003981 - B4 SINE B4 -10 282 58 2 1494 8340 23 0 1 chr1 119191961 119193668 -78001764 - L1Md_T LINE L1 0 6582 4878 2 1494 541 41 0 51 chr1 119193653 119193731 -78001701 + L1Md_T LINE L1 4805 4878 -1005 2 1494 181 368 130 9 chr1 119193795 119193910 -78001522 + MER5B DNA MER1_type 27 155 -23 2 1494 447 19 0 0 chr1 119194549 119194601 -78000831 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1494 525 92 0 0 chr1 119194603 119194679 -78000753 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1494 213 39 0 0 chr1 119194778 119194804 -78000628 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1494 453 317 94 0 chr1 119195762 119195942 -77999490 + RMER15 LTR ERVL 338 534 -41 2 1494 1591 205 35 20 chr1 119197393 119197736 -77997696 + RMER6B LTR ERVK 114 461 0 2 1494 1827 258 117 50 chr1 119197873 119199307 -77996125 + RMER1B Other Other 48 1066 0 2 1494 224 330 0 99 chr1 119199881 119199982 -77995450 + ID_B1 SINE B4 1 91 -133 2 1494 22 0 0 0 chr1 119200354 119200376 -77995056 + AT_rich Low_complexity Low_complexity 1 22 0 2 1494 223 343 0 95 chr1 119200532 119200545 -77994887 - PB1D10 SINE Alu 0 117 108 2 1494 270 0 0 0 chr1 119200545 119200575 -77994857 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1494 223 343 0 95 chr1 119200575 119200677 -77994755 - PB1D10 SINE Alu -10 107 13 2 1494 721 325 37 0 chr1 119200677 119200763 -77994669 - ID_B1 SINE B4 -29 195 1 2 1494 6090 31 0 9 chr1 119201428 119202167 -77993265 - L1Md_F3 LINE L1 -2 6582 5851 3 1494 256 226 11 45 chr1 119202215 119202303 -77993129 - L1VL1 LINE L1 -6059 363 279 3 1494 623 305 50 136 chr1 119202489 119202812 -77992620 - RLTR23 LTR ERV1 -130 300 6 3 1494 685 237 8 8 chr1 119203439 119203571 -77991861 + RSINE1 SINE B4 3 134 -31 3 1494 1408 114 46 0 chr1 119203661 119203880 -77991552 - L1Md_F2 LINE L1 -1 6581 6353 3 1494 1235 91 0 18 chr1 119203881 119204121 -77991311 + L1_Mm LINE L1 2335 2644 -3239 3 1494 398 308 94 117 chr1 119204678 119204898 -77990534 + B4A SINE B4 2 230 -62 3 1494 609 309 34 0 chr1 119204898 119205102 -77990330 + B3 SINE B2 1 211 -5 3 1494 398 308 94 117 chr1 119205102 119205179 -77990253 + B4A SINE B4 231 292 0 3 1494 185 234 0 15 chr1 119205179 119205244 -77990188 + (CATA)n Simple_repeat Simple_repeat 3 66 0 3 1494 252 0 0 0 chr1 119205316 119205344 -77990088 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1494 611 67 11 0 chr1 119205854 119205943 -77989489 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 3 1494 351 0 0 0 chr1 119205982 119206021 -77989411 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1494 273 57 0 0 chr1 119206105 119206140 -77989292 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1494 771 282 10 0 chr1 119206140 119206349 -77989083 - B3 SINE B2 -5 211 1 3 1494 236 211 17 17 chr1 119206536 119206594 -77988838 + GA-rich Low_complexity Low_complexity 3 60 0 3 1494 300 310 16 57 chr1 119206594 119206717 -77988715 - RSINE1 SINE B4 -40 125 8 3 1494 252 257 124 0 chr1 119206842 119206955 -77988477 - L1MA4 LINE L1 -57 6243 6117 3 1494 1120 113 86 20 chr1 119207448 119207646 -77987786 + Lx LINE L1 6444 6654 0 3 1494 1137 261 143 22 chr1 119208061 119208425 -77987007 + MTD LTR MaLR 10 417 -2 3 1494 682 296 45 20 chr1 119208428 119208558 -77986874 + B4 SINE B4 88 217 -75 3 1494 261 57 0 0 chr1 119208558 119208593 -77986839 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1494 682 296 45 20 chr1 119208593 119208662 -77986770 + B4 SINE B4 218 291 -1 3 1494 344 200 0 0 chr1 119208669 119208729 -77986703 + HAL1-3A_ME LINE L1 1976 2035 -823 3 1494 753 209 16 21 chr1 119209010 119209201 -77986231 + Lx2 LINE L1 6804 6993 -4 3 1494 288 0 0 0 chr1 119209212 119209244 -77986188 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1494 294 273 48 48 chr1 119209459 119209563 -77985869 - MTEb LTR MaLR -3 376 273 3 1494 360 240 69 20 chr1 119209599 119209701 -77985731 - MTEb LTR MaLR -221 158 52 3 1494 1692 180 47 81 chr1 119209807 119210213 -77985219 - RLTR24 LTR ERV1 -135 394 3 3 1494 392 364 42 35 chr1 119210216 119210475 -77984957 + L1MC4 LINE L1 6867 7127 -915 3 1494 3326 39 0 14 chr1 119211206 119211620 -77983812 - L1Md_F3 LINE L1 -2 6582 6175 3 1494 282 378 110 7 chr1 119211699 119211835 -77983597 + B4 SINE B4 138 287 -5 3 1494 214 273 11 43 chr1 119211935 119212027 -77983405 + (CATA)n Simple_repeat Simple_repeat 1 89 0 3 1494 313 133 0 48 chr1 119212500 119212563 -77982869 - MTE2b LTR MaLR -1 378 319 3 1494 371 304 11 0 chr1 119212661 119212753 -77982679 - MTE2b LTR MaLR -228 151 59 3 1494 1263 260 67 31 chr1 119213747 119214256 -77981176 + RLTR11A2 LTR ERVK 1 527 0 3 1494 611 286 16 26 chr1 119214748 119214941 -77980491 + MLT2B1 LTR ERVL 14 204 -316 3 1494 692 337 35 0 chr1 119214941 119215143 -77980289 + B4 SINE B4 1 209 -83 3 1494 369 0 0 0 chr1 119215145 119215186 -77980246 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1494 512 366 59 19 chr1 119215262 119215518 -77979914 + MLT2B1 LTR ERVL 189 454 -66 3 1494 528 16 0 0 chr1 119216460 119216521 -77978911 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1494 187 263 34 34 chr1 119217367 119217426 -77978006 - L2 LINE L2 -844 2575 2517 3 1494 799 288 0 28 chr1 119217482 119217700 -77977732 + B3 SINE B2 2 213 -3 3 1494 243 361 9 9 chr1 119217841 119217950 -77977482 + RMER15 LTR ERVL 275 383 -192 3 1494 588 187 121 0 chr1 119218362 119218560 -77976872 - Lx9 LINE L1 0 7644 7423 3 1494 296 302 68 38 chr1 119218639 119218821 -77976611 + L1M2 LINE L1 5480 5664 -627 3 1494 536 112 20 0 chr1 119219149 119219247 -77976185 + L1_Mus4 LINE L1 6531 6630 -6 3 1494 6888 161 15 13 chr1 119219886 119221406 -77974026 - Lx4A LINE L1 -231 6827 5282 3 1494 2474 41 6 3 chr1 119221406 119221721 -77973711 - L1Md_F2 LINE L1 -2 6580 6265 3 1494 5307 161 32 33 chr1 119221721 119222252 -77973180 - Lx4A LINE L1 -596 5281 4764 3 1494 591 289 86 20 chr1 119222258 119222493 -77972939 + RLTR16 LTR ERVK 4 270 -298 3 1494 2205 81 119 36 chr1 119222529 119222889 -77972543 + RLTR10 LTR ERVK 1 390 0 3 1494 249 82 16 47 chr1 119223110 119223174 -77972258 + (TTTTTG)n Simple_repeat Simple_repeat 3 64 0 3 1494 3435 159 23 42 chr1 119223189 119224087 -77971345 - Lx4A LINE L1 -1113 4767 3965 3 1494 450 0 0 0 chr1 119224200 119224250 -77971182 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1494 453 36 0 0 chr1 119224443 119224498 -77970934 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1494 189 0 0 0 chr1 119224698 119224719 -77970713 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1494 525 320 130 29 chr1 119225165 119225403 -77970029 - B4 SINE B4 -28 264 3 3 1494 468 48 0 0 chr1 119226182 119226245 -77969187 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1494 262 279 12 0 chr1 119226247 119226333 -77969099 + (CATA)n Simple_repeat Simple_repeat 2 88 0 3 1494 285 29 0 0 chr1 119226334 119226368 -77969064 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1494 624 286 78 53 chr1 119226429 119226713 -77968719 + B4 SINE B4 2 292 0 3 1494 279 345 9 18 chr1 119226891 119227003 -77968429 + RSINE1 SINE B4 55 165 0 3 1494 22 0 0 0 chr1 119227044 119227066 -77968366 + AT_rich Low_complexity Low_complexity 1 22 0 3 1494 26 30 0 0 chr1 119228273 119228306 -77967126 + AT_rich Low_complexity Low_complexity 1 33 0 3 1494 241 280 89 65 chr1 119228794 119228962 -77966470 + RLTR20A LTR ERVK 96 267 -274 3 1494 572 304 48 10 chr1 119229095 119229387 -77966045 + L1MB8 LINE L1 4541 4843 -1303 3 1494 24 32 0 0 chr1 119230042 119230073 -77965359 + AT_rich Low_complexity Low_complexity 1 31 0 3 1494 22 0 0 0 chr1 119230299 119230321 -77965111 + AT_rich Low_complexity Low_complexity 1 22 0 3 1494 5416 129 16 7 chr1 119230392 119231003 -77964429 + Lx3C LINE L1 4959 5576 -310 3 1494 1117 90 0 0 chr1 119231003 119231148 -77964284 + B1_Mus1 SINE Alu 2 146 -2 3 1494 7811 142 21 7 chr1 119231148 119232526 -77962906 + Lx3C LINE L1 5577 6969 -7 3 1494 2581 230 62 30 chr1 119232631 119233321 -77962111 + RMER12 LTR ERVK 1 712 -610 3 1494 262 246 118 34 chr1 119233549 119233591 -77961841 - RLTR8 LTR ERVK 0 364 307 3 1494 606 28 0 0 chr1 119233591 119233663 -77961769 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1494 262 238 79 41 chr1 119233663 119233761 -77961671 - RLTR8 LTR ERVK -57 307 202 3 1494 691 318 58 104 chr1 119233968 119234361 -77961071 + RMER12 LTR ERVK 948 1322 0 3 1494 342 337 34 40 chr1 119234415 119234591 -77960841 + L1MB8 LINE L1 5818 5992 -186 3 1494 1472 233 47 28 chr1 119234784 119235146 -77960286 + ORR1D1 LTR MaLR 6 374 0 3 1494 433 319 13 71 chr1 119235195 119235350 -77960082 + RSINE1 SINE B4 16 161 -4 3 1494 6407 163 48 15 chr1 119235414 119236840 -77958592 + Lx2B LINE L1 5487 6995 -5 3 1494 202 219 88 59 chr1 119238072 119238174 -77957258 + L3 LINE CR1 1072 1176 -3313 3 1494 449 275 9 9 chr1 119238305 119238415 -77957017 - RMER5 LTR ERV1 -15 519 410 3 1494 21 0 0 0 chr1 119238463 119238484 -77956948 + AT_rich Low_complexity Low_complexity 1 21 0 3 1494 235 270 67 11 chr1 119238495 119238585 -77956847 - RMER5 LTR ERV1 -259 275 181 3 1494 12826 96 3 6 chr1 119238604 119240804 -77954628 + L1_Mus1 LINE L1 3899 6092 -475 3 1494 305 300 94 27 chr1 119240819 119241042 -77954390 + L1M4c LINE L1 975 1212 -5172 3 1494 675 376 58 4 chr1 119241109 119241352 -77954080 + B4 SINE B4 2 257 -35 3 1494 1141 75 7 0 chr1 119241441 119241587 -77953845 + B1_Mus2 SINE Alu 1 147 0 3 1494 2094 101 0 0 chr1 119241882 119242190 -77953242 - L1_Mus1 LINE L1 -11 5872 5565 3 1494 5100 69 13 5 chr1 119242190 119242860 -77952572 + L1_Mus1 LINE L1 5892 6567 0 3 1494 21 36 0 0 chr1 119242910 119242938 -77952494 + AT_rich Low_complexity Low_complexity 1 28 0 3 1494 327 338 7 0 chr1 119242938 119243086 -77952346 + L1M4c LINE L1 2477 2625 -3751 3 1494 441 0 0 0 chr1 119243091 119243140 -77952292 + (TTA)n Simple_repeat Simple_repeat 3 51 0 3 1494 238 322 23 46 chr1 119243191 119243406 -77952026 + L1M4c LINE L1 2767 2977 -3405 3 1494 2878 124 59 17 chr1 119243424 119243898 -77951534 - Lx LINE L1 0 6654 6161 3 1494 2746 122 9 0 chr1 119243899 119244348 -77951084 + L1_Mus3 LINE L1 4203 4655 -1228 3 1494 3220 140 6 1 chr1 119244343 119244978 -77950454 + L1_Mus3 LINE L1 5487 6128 -510 3 1494 278 266 62 31 chr1 119245552 119245746 -77949686 + L1M4c LINE L1 3252 3451 -2925 3 1494 1241 94 16 5 chr1 119245789 119245982 -77949450 + L1_Mus3 LINE L1 6440 6634 -4 3 1494 2049 132 52 3 chr1 119245988 119246314 -77949118 + MTC LTR MaLR 77 418 -3 3 1494 261 163 0 0 chr1 119246927 119246970 -77948462 + MER58A DNA MER1_type 35 77 -147 3 1494 626 82 10 0 chr1 119246975 119247073 -77948359 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 1494 278 312 134 0 chr1 119247160 119247272 -77948160 + RSINE1 SINE B4 11 137 -28 3 1494 26 30 0 0 chr1 119247273 119247306 -77948126 + AT_rich Low_complexity Low_complexity 1 33 0 3 1494 366 341 45 73 chr1 119247504 119247900 -77947532 + L1M4c LINE L1 3975 4359 -2020 3 1494 4110 272 67 9 chr1 119248047 119248679 -77946753 + Lx6 LINE L1 6082 6758 -702 3 1494 182 37 0 36 chr1 119248679 119248707 -77946725 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1494 4110 272 67 9 chr1 119248707 119249350 -77946082 + Lx6 LINE L1 6759 7430 -30 3 1494 1105 82 7 0 chr1 119249465 119249611 -77945821 + B1_Mus2 SINE Alu 1 147 0 3 1494 326 210 0 0 chr1 119249637 119249699 -77945733 + Lx8 LINE L1 7008 7069 -404 3 1494 304 272 123 32 chr1 119249693 119249978 -77945454 + L1M4 LINE L1 4911 5221 -925 3 1494 1135 88 0 0 chr1 119250051 119250198 -77945234 + B1_Mus2 SINE Alu 1 147 0 3 1494 1984 275 136 16 chr1 119250301 119251178 -77944254 + Lx9 LINE L1 6656 7637 -7 3 1494 686 258 8 21 chr1 119251315 119251494 -77943938 + B3A SINE B2 45 213 -3 3 1494 23 33 0 0 chr1 119251494 119251524 -77943908 + AT_rich Low_complexity Low_complexity 1 30 0 3 1494 233 312 0 12 chr1 119251593 119251674 -77943758 + L1M4 LINE L1 5628 5707 -476 3 1494 261 83 0 0 chr1 119251782 119251818 -77943614 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1494 343 297 53 26 chr1 119252054 119252168 -77943264 - MTEa LTR MaLR 0 379 263 3 1494 468 0 0 0 chr1 119253419 119253471 -77941961 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1494 1760 259 79 64 chr1 119253559 119254346 -77941086 + RMER13B LTR ERVK 156 904 -4 4 1494 724 350 17 0 chr1 119254349 119254586 -77940846 - MTEa LTR MaLR -132 247 7 3 1494 3050 103 21 0 chr1 119254761 119255226 -77940206 - Lx2 LINE L1 -315 6682 6208 4 1494 2204 106 15 3 chr1 119255226 119255556 -77939876 + Lx2 LINE L1 6664 6997 0 4 1494 267 246 24 24 chr1 119255693 119255818 -77939614 + GA-rich Low_complexity Low_complexity 4 128 0 4 1494 622 311 51 20 chr1 119256247 119256444 -77938988 + ID_B1 SINE B4 1 203 -21 4 1494 385 314 12 25 chr1 119256444 119256604 -77938828 + GA-rich Low_complexity Low_complexity 1 158 0 4 1494 828 284 32 52 chr1 119257189 119257438 -77937994 + B4A SINE B4 2 245 -47 4 1494 332 276 22 22 chr1 119257427 119257516 -77937916 + B1_Mus2 SINE Alu 1 89 -58 4 1494 253 318 90 96 chr1 119257516 119257608 -77937824 + B4A SINE B4 96 270 -22 4 1494 258 32 0 0 chr1 119257613 119257644 -77937788 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1494 1431 274 110 31 chr1 119258014 119258631 -77936801 + Lx9 LINE L1 6751 7416 -228 4 1494 243 0 0 0 chr1 119258631 119258658 -77936774 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1494 687 84 0 0 chr1 119258658 119258752 -77936680 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1494 546 16 0 0 chr1 119258770 119258833 -77936599 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1494 285 250 17 0 chr1 119258970 119259030 -77936402 + B4A SINE B4 215 275 -17 4 1494 1078 46 0 32 chr1 119259129 119259285 -77936147 + L1Md_F3 LINE L1 6432 6582 -2 4 1494 3859 86 9 4 chr1 119259485 119260012 -77935420 - L1Md_F2 LINE L1 -11 6571 6042 4 1494 21 0 0 0 chr1 119260017 119260038 -77935394 + AT_rich Low_complexity Low_complexity 1 21 0 4 1494 485 272 52 76 chr1 119260047 119260258 -77935174 + Lx8 LINE L1 7000 7205 -268 4 1494 564 309 57 6 chr1 119261276 119261452 -77933980 + Lx8 LINE L1 7001 7185 -288 4 1494 244 253 70 35 chr1 119261507 119261593 -77933839 + RMER15 LTR ERVL 370 458 -117 4 1494 590 168 0 6 chr1 119261597 119261759 -77933673 + CT-rich Low_complexity Low_complexity 2 162 0 4 1494 327 25 0 0 chr1 119261759 119261799 -77933633 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1494 223 259 19 0 chr1 119262346 119262399 -77933033 - RSINE1 SINE B4 -99 66 13 4 1494 1196 287 102 10 chr1 119262399 119262783 -77932649 - MTD LTR MaLR 0 419 1 4 1494 2562 188 46 0 chr1 119263174 119263674 -77931758 + RLTR11A2 LTR ERVK 5 527 0 4 1494 312 383 48 32 chr1 119263691 119263877 -77931555 + MLT1E2 LTR MaLR 358 546 -81 4 1494 588 300 29 104 chr1 119264489 119264805 -77930627 - B4 SINE B4 0 292 1 4 1494 351 65 0 0 chr1 119265208 119265254 -77930178 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1494 368 324 35 44 chr1 119265421 119265534 -77929898 + B4A SINE B4 1 112 -180 4 1494 465 19 0 0 chr1 119265627 119265681 -77929751 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1494 387 0 0 0 chr1 119265710 119265753 -77929679 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1494 192 125 0 0 chr1 119265767 119265799 -77929633 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1494 36213 31 1 2 chr1 119266352 119273207 -77922225 - L1Md_T LINE L1 0 6585 1 4 1494 321 291 97 56 chr1 119273452 119273721 -77921711 + L1MC5 LINE L1 7638 7917 -44 4 1494 707 299 55 82 chr1 119273787 119274301 -77921131 + Lx8 LINE L1 6890 7389 -84 4 1494 23 0 0 0 chr1 119274592 119274615 -77920817 + AT_rich Low_complexity Low_complexity 1 23 0 4 186 620 246 21 77 chr1 119275473 119275667 -77919765 - MTEa LTR MaLR -3 376 194 4 1495 2247 177 76 33 chr1 119275845 119276694 -77918738 - MTEa-int LTR MaLR 0 1963 1001 4 1495 7005 96 9 4 chr1 119276699 119277738 -77917694 - L1_Mus3 LINE L1 -4 6634 5591 4 1495 1032 227 12 40 chr1 119277740 119278146 -77917286 - MTEa-int LTR MaLR -981 982 518 4 1495 505 189 45 148 chr1 119278052 119278207 -77917225 - MT2B LTR ERVL -307 294 156 4 1495 1666 175 3 79 chr1 119278236 119278590 -77916842 + ORR1A4 LTR MaLR 3 329 0 4 1495 268 231 57 0 chr1 119278590 119278659 -77916773 + ORR1A4-int LTR MaLR 1 86 -1877 4 1495 698 136 6 30 chr1 119278670 119278837 -77916595 + (TA)n Simple_repeat Simple_repeat 1 163 0 4 1495 211 286 0 0 chr1 119278862 119278918 -77916514 + (TATG)n Simple_repeat Simple_repeat 4 59 0 4 1495 240 250 0 0 chr1 119278944 119278992 -77916440 + ORR1A4 LTR MaLR 123 170 -159 4 1495 316 285 123 52 chr1 119279052 119279263 -77916169 + L1MD LINE L1 5258 5483 -876 4 1495 981 104 0 0 chr1 119279389 119279533 -77915899 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 4 1495 423 0 0 0 chr1 119279533 119279579 -77915853 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 4 1495 2774 161 25 29 chr1 119279989 119280513 -77914919 + Lx4B LINE L1 6537 7058 0 4 1495 270 0 0 0 chr1 119280545 119280575 -77914857 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1495 2597 205 42 91 chr1 119280869 119281582 -77913850 - RMER6C LTR ERVK -12 678 1 4 1495 240 122 0 0 chr1 119281698 119281739 -77913693 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 1495 3499 154 37 5 chr1 119282159 119282786 -77912646 + Lx2 LINE L1 5997 6643 -354 4 1495 1086 163 74 0 chr1 119282786 119282988 -77912444 + Lx2 LINE L1 6775 6991 -6 4 1495 1643 225 24 8 chr1 119283453 119283825 -77911607 - ORR1C1 LTR MaLR 0 378 1 4 1495 4156 271 60 41 chr1 119283825 119284715 -77910717 - ORR1C1-int LTR MaLR 0 1370 479 4 1495 182 62 31 0 chr1 119284715 119284747 -77910685 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1495 4156 271 60 41 chr1 119284747 119285199 -77910233 - ORR1C1-int LTR MaLR -892 478 2 4 1495 802 255 25 25 chr1 119285215 119285416 -77910016 - ORR1C1 LTR MaLR -12 366 166 4 1495 833 145 17 24 chr1 119285430 119285728 -77909704 + GA-rich Low_complexity Low_complexity 1 296 0 4 1495 657 189 32 83 chr1 119285728 119285873 -77909559 - ORR1C1 LTR MaLR -198 169 33 4 1495 789 272 45 106 chr1 119285873 119286248 -77909184 - RLTR18B LTR ERVK 0 616 124 4 1495 446 302 48 54 chr1 119286405 119286573 -77908859 - RLTR18B LTR ERVK -331 181 15 4 1495 249 149 43 0 chr1 119286596 119286643 -77908789 - ORR1C1 LTR MaLR -335 49 1 4 1495 4112 54 4 4 chr1 119287699 119288202 -77907230 + RLTR1C LTR ERV1 1 503 0 4 1495 347 328 76 55 chr1 119290211 119290356 -77905076 + B4 SINE B4 127 274 -18 4 1495 297 68 0 0 chr1 119290363 119290407 -77905025 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1495 22 0 0 0 chr1 119290412 119290434 -77904998 + AT_rich Low_complexity Low_complexity 1 22 0 4 1495 306 283 53 70 chr1 119291030 119291144 -77904288 - PB1D9 SINE Alu -3 117 6 4 1495 833 315 65 14 chr1 119292234 119292448 -77902984 + MT2A LTR ERVL 4 227 -306 4 1495 312 111 0 0 chr1 119292448 119292502 -77902930 + (CTG)n Simple_repeat Simple_repeat 3 56 0 4 1495 833 315 65 14 chr1 119292502 119292657 -77902775 + MT2A LTR ERVL 228 391 -142 4 1495 383 283 63 39 chr1 119292667 119292698 -77902734 + CYRA11_Mm Unknown Y-chromosome 135 170 -447 4 1495 1127 212 5 0 chr1 119292698 119292910 -77902522 - URR1B DNA MER1_type 0 225 13 4 1495 272 27 27 0 chr1 119293060 119293097 -77902335 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 4 1495 230 269 125 25 chr1 119293097 119293177 -77902255 - PB1D7 SINE Alu 0 120 33 4 1495 312 305 105 14 chr1 119293236 119293379 -77902053 - RMER4A LTR ERVK -44 422 267 4 1495 778 272 67 80 chr1 119293380 119293931 -77901501 - MYSERV16_I-int LTR ERVK -1444 882 339 4 1495 3606 47 7 0 chr1 119293956 119294405 -77901027 - L1Md_F2 LINE L1 -11 6571 6120 4 1495 5338 119 53 3 chr1 119294514 119295364 -77900068 - Lx3_Mus LINE L1 -9 7000 6109 4 1495 1198 293 58 44 chr1 119295396 119296031 -77899401 - MYSERV-int LTR ERVK -2132 4418 3775 4 1495 32 43 0 0 chr1 119296485 119296531 -77898901 + AT_rich Low_complexity Low_complexity 1 46 0 4 1495 1685 171 173 2 chr1 119296617 119296867 -77898565 - L1_Mur2 LINE L1 -377 5500 5218 4 1495 189 0 0 0 chr1 119296867 119296888 -77898544 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1495 1685 171 173 2 chr1 119296888 119297042 -77898390 - L1_Mur2 LINE L1 -660 5217 5027 4 1495 1220 256 31 26 chr1 119297056 119297445 -77897987 + MYSERV-int LTR ERVK 5962 6352 -198 4 1495 36878 38 2 8 chr1 119297540 119303746 -77891686 - L1Md_T LINE L1 0 6582 422 4 1495 480 239 53 62 chr1 119303799 119304026 -77891406 + MYSERV-int LTR ERVK 6326 6550 0 4 1495 717 269 75 29 chr1 119304042 119304420 -77891012 + RLTR11A2 LTR ERVK 7 412 -29 4 1495 2604 132 21 7 chr1 119304785 119305219 -77890213 + Lx LINE L1 6215 6654 0 4 1495 885 290 222 25 chr1 119305463 119305926 -77889506 + RMER15 LTR ERVL 22 575 0 4 1495 484 65 13 13 chr1 119306122 119306200 -77889232 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1495 284 333 0 0 chr1 119306402 119306477 -77888955 - B4A SINE B4 -124 168 94 4 1495 5494 76 44 6 chr1 119306477 119307287 -77888145 + L1_Mus1 LINE L1 5725 6565 -2 4 1495 1527 115 8 4 chr1 119307310 119307545 -77887887 + L1_Mus3 LINE L1 6401 6636 -2 4 1495 316 327 17 58 chr1 119308427 119308547 -77886885 + RSINE1 SINE B4 41 155 -10 4 1495 567 239 111 24 chr1 119309023 119309167 -77886265 + B3A SINE B2 4 162 -36 4 1495 330 67 0 0 chr1 119309212 119309257 -77886175 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 1495 996 259 77 8 chr1 119309417 119309680 -77885752 + MTE2b LTR MaLR 33 295 -84 4 1495 3762 67 4 0 chr1 119309737 119310216 -77885216 - L1_Mus1 LINE L1 0 6567 6087 4 1495 5180 77 4 0 chr1 119310216 119311180 -77884252 + L1_Mus1 LINE L1 5108 6075 -492 4 1495 278 284 15 0 chr1 119311180 119311247 -77884185 + MTE2b LTR MaLR 311 378 -1 4 1495 387 0 0 0 chr1 119311968 119312011 -77883421 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1495 438 36 0 0 chr1 119312011 119312066 -77883366 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1495 567 360 16 5 chr1 119312071 119312261 -77883171 - B4A SINE B4 -100 192 1 4 1495 228 67 0 0 chr1 119312479 119312509 -77882923 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 1495 1007 147 6 0 chr1 119312509 119312686 -77882746 + GA-rich Low_complexity Low_complexity 2 179 0 4 1495 899 265 16 0 chr1 119312698 119312887 -77882545 + B3 SINE B2 13 204 -12 4 1495 758 311 80 20 chr1 119313726 119313975 -77881457 + B4A SINE B4 11 274 -18 4 1495 324 243 28 18 chr1 119314032 119314141 -77881291 + GA-rich Low_complexity Low_complexity 4 113 0 4 1495 23 54 0 0 chr1 119314252 119314289 -77881143 + AT_rich Low_complexity Low_complexity 1 37 0 4 1495 682 402 8 0 chr1 119314839 119315080 -77880352 + B4A SINE B4 27 269 -23 4 1495 345 93 0 0 chr1 119315080 119315134 -77880298 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1495 682 402 8 0 chr1 119315134 119315148 -77880284 + B4A SINE B4 270 283 -9 4 1495 502 279 97 40 chr1 119317901 119318129 -77877303 + RMER15 LTR ERVL 316 556 -19 4 1495 862 329 80 17 chr1 119318401 119318803 -77876629 + BGLII_B LTR ERVK 5 431 -10 4 1495 31 0 0 0 chr1 119318885 119318916 -77876516 + AT_rich Low_complexity Low_complexity 1 31 0 5 1495 505 275 197 8 chr1 119319066 119319315 -77876117 + RMER5 LTR ERV1 217 512 -22 5 1495 354 45 0 0 chr1 119319321 119319365 -77876067 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1495 420 171 0 0 chr1 119319365 119319476 -77875956 + GA-rich Low_complexity Low_complexity 2 112 0 5 1495 263 365 38 6 chr1 119319599 119319756 -77875676 - RSINE1 SINE B4 0 165 4 5 1495 2843 52 0 11 chr1 119320060 119320410 -77875022 + ORR1A1 LTR MaLR 1 346 0 5 1495 227 422 22 0 chr1 119320843 119320933 -77874499 + ID_B1 SINE B4 80 171 -53 5 1495 357 365 0 9 chr1 119320856 119320961 -77874471 + PB1D10 SINE Alu 14 117 0 5 1495 234 279 0 0 chr1 119321163 119321231 -77874201 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1495 226 246 18 0 chr1 119321317 119321431 -77874001 + (CA)n Simple_repeat Simple_repeat 2 117 0 5 1495 274 272 19 10 chr1 119321449 119321553 -77873879 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 1495 186 103 0 0 chr1 119321553 119321582 -77873850 + (CCA)n Simple_repeat Simple_repeat 1 29 0 5 1495 297 216 138 31 chr1 119321701 119321849 -77873583 + Lx6 LINE L1 7311 7451 -9 5 1495 467 59 0 0 chr1 119321966 119322034 -77873398 + L1_Mus3 LINE L1 6565 6632 -6 5 1495 404 37 0 18 chr1 119323323 119323378 -77872054 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1495 2284 279 47 49 chr1 119323538 119324124 -77871308 + ORR1D2-int LTR MaLR 611 1201 -169 5 1495 369 0 0 0 chr1 119324124 119324165 -77871267 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1495 2284 279 47 49 chr1 119324165 119324339 -77871093 + ORR1D2-int LTR MaLR 1202 1370 0 5 1495 561 377 23 9 chr1 119324339 119324553 -77870879 + ORR1D2 LTR MaLR 1 217 -153 5 1495 36204 44 0 3 chr1 119324557 119331016 -77864416 - L1Md_T LINE L1 0 6585 49 5 1495 415 315 36 6 chr1 119331017 119331183 -77864249 + ORR1D2 LTR MaLR 200 370 0 5 1495 394 315 0 0 chr1 119331183 119331294 -77864138 + Lx8 LINE L1 7103 7213 -260 5 1495 1753 233 100 57 chr1 119331299 119331859 -77863573 - RLTR31A_Mm LTR ERVK 0 584 1 5 1495 5292 209 54 38 chr1 119331863 119333457 -77861975 - RMER3D-int LTR ERVK -4 2838 1219 5 1495 7386 81 1 29 chr1 119333464 119334584 -77860848 - L1Md_F2 LINE L1 -482 5401 4313 5 1495 1456 59 0 0 chr1 119334584 119334771 -77860661 + L1Md_F2 LINE L1 5400 5586 -297 5 1495 7746 63 3 16 chr1 119334771 119335779 -77859653 + L1Md_F2 LINE L1 5587 6581 -1 5 1495 691 178 21 36 chr1 119335794 119335986 -77859446 - RMER3D-int LTR ERVK -1639 1203 1015 5 1495 786 231 93 83 chr1 119336008 119336526 -77858906 - RMER3D-int LTR ERVK -1991 851 10 5 1495 1077 161 57 93 chr1 119336526 119336659 -77858773 - RLTR31A_Mm LTR ERVK -347 237 113 5 1495 297 0 0 0 chr1 119336659 119336692 -77858740 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1495 204 40 0 0 chr1 119336692 119336716 -77858716 + (CG)n Simple_repeat Simple_repeat 1 25 0 5 1495 1077 161 57 93 chr1 119336716 119336827 -77858605 - RLTR31A_Mm LTR ERVK -472 112 2 5 1495 28 61 0 0 chr1 119336953 119337002 -77858430 + AT_rich Low_complexity Low_complexity 1 49 0 5 1495 317 200 101 31 chr1 119337183 119337274 -77858158 - ORR1C2 LTR MaLR -44 350 259 5 1495 789 11 0 0 chr1 119337274 119337364 -77858068 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 5 1495 692 194 58 76 chr1 119337364 119337541 -77857891 - ORR1C2 LTR MaLR -136 258 1 5 1495 3995 252 51 60 chr1 119337541 119338716 -77856716 - ORR1C2-int LTR MaLR 0 1370 200 5 1495 1134 95 0 0 chr1 119338716 119338863 -77856569 - B1_Mm SINE Alu 0 147 1 5 1495 3995 252 51 60 chr1 119338863 119339069 -77856363 - ORR1C2-int LTR MaLR -1171 199 1 5 1495 1300 164 171 47 chr1 119339069 119339407 -77856025 - ORR1C2 LTR MaLR -2 382 1 5 1495 198 160 0 0 chr1 119339445 119339495 -77855937 + A-rich Low_complexity Low_complexity 1 50 0 5 1495 657 283 148 51 chr1 119340591 119340923 -77854509 - RMER15 LTR ERVL 0 575 212 5 1495 578 316 67 22 chr1 119341324 119341683 -77853749 + MTEb LTR MaLR 5 379 0 5 1495 1463 198 152 82 chr1 119341780 119342182 -77853250 - MT2A LTR ERVL -103 430 1 5 1495 242 268 0 67 chr1 119342211 119342331 -77853101 + GA-rich Low_complexity Low_complexity 3 114 0 5 1495 189 0 0 0 chr1 119342374 119342395 -77853037 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1495 836 338 46 23 chr1 119342397 119342745 -77852687 - ORR1E LTR MaLR 0 359 4 5 1495 2580 178 39 14 chr1 119342928 119343435 -77851997 + RLTR11A LTR ERVK 7 526 -2 5 1495 26897 105 9 8 chr1 119343595 119348699 -77846733 + L1Md_F2 LINE L1 188 5301 -582 5 1495 4052 61 0 0 chr1 119348697 119349236 -77846196 - L1Md_F3 LINE L1 -291 5592 5054 5 1495 7729 47 7 6 chr1 119349236 119350213 -77845219 + L1Md_F3 LINE L1 5606 6583 -1 5 1495 1977 97 7 0 chr1 119350213 119350503 -77844929 + L1Md_F2 LINE L1 5294 5585 -298 5 1495 7080 94 4 1 chr1 119350504 119351485 -77843947 + L1Md_F2 LINE L1 5587 6570 -12 5 1495 351 281 24 0 chr1 119351987 119352069 -77843363 - B3 SINE B2 -37 179 96 5 1495 2692 177 8 2 chr1 119352101 119352615 -77842817 - Lx4A LINE L1 -532 6526 6010 5 1495 24 32 0 0 chr1 119352622 119352653 -77842779 + AT_rich Low_complexity Low_complexity 1 31 0 5 1495 2703 154 26 26 chr1 119352655 119353147 -77842285 - Lx4A LINE L1 -16 7042 6551 5 1495 587 153 0 16 chr1 119353147 119353396 -77842036 + (TCTCTG)n Simple_repeat Simple_repeat 1 244 0 5 1495 2992 174 52 5 chr1 119353494 119354090 -77841342 - Lx4A LINE L1 -487 6571 5948 5 1495 1500 101 54 15 chr1 119354083 119354344 -77841088 - L1_Mur2 LINE L1 -861 5016 4746 5 1495 1186 68 0 6 chr1 119354537 119354699 -77840733 - RLTR9E LTR ERVK -248 161 1 5 1495 536 40 0 50 chr1 119354699 119354779 -77840653 - RMER16-int LTR ERVK 0 7406 7331 5 1495 2317 185 97 6 chr1 119354779 119355273 -77840159 - RLTR13D6 LTR ERVK -363 539 1 5 1495 1386 140 16 12 chr1 119355292 119355538 -77839894 - ETnERV3-int LTR ERVK -32 5776 5530 5 1495 341 109 0 59 chr1 119355543 119355611 -77839821 - RLTR45-int LTR ERVK -1172 6072 6009 5 1495 1888 174 38 100 chr1 119355707 119356599 -77838833 - RMER16-int LTR ERVK -1234 4172 2696 5 1495 1093 123 18 0 chr1 119356602 119356772 -77838660 - ETnERV2-int LTR ERVK -3509 3897 3725 5 1495 1060 273 115 68 chr1 119356784 119357228 -77838204 - RMER13A LTR ERVK -395 465 1 5 1495 3593 121 13 2 chr1 119357228 119357826 -77837606 - L1_Mur2 LINE L1 -1111 4766 4162 5 1495 800 268 63 136 chr1 119357843 119358300 -77837132 + RMER2 LTR ERV1 115 538 -29 5 1495 15327 139 18 23 chr1 119358318 119359359 -77836073 - L1_Mur2 LINE L1 -1709 4168 3129 5 1495 234 0 0 0 chr1 119359359 119359385 -77836047 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1495 15327 139 18 23 chr1 119359385 119360083 -77835349 - L1_Mur2 LINE L1 -2749 3128 2425 5 1495 742 192 233 58 chr1 119360083 119360431 -77835001 - RLTR9E LTR ERVK 0 409 1 5 1495 15327 141 20 24 chr1 119360431 119361774 -77833658 - L1_Mur2 LINE L1 -3453 2424 1122 5 1495 1223 60 0 40 chr1 119361774 119361947 -77833485 - L1Md_T LINE L1 -2 6580 6415 5 1495 4714 166 40 30 chr1 119361947 119362657 -77832775 - L1_Mur2 LINE L1 -5965 1121 379 5 1495 855 183 25 97 chr1 119362658 119362855 -77832577 - Lx4A LINE L1 -1033 6025 5845 5 1495 3035 179 10 0 chr1 119362855 119363374 -77832058 + Lx4A LINE L1 6528 7051 -7 5 1495 855 185 24 89 chr1 119363374 119363463 -77831969 - Lx4A LINE L1 -298 5858 5767 5 1495 247 246 0 0 chr1 119364825 119364882 -77830550 + Lx9 LINE L1 7321 7377 -267 5 1495 37 23 0 0 chr1 119365000 119365044 -77830388 + AT_rich Low_complexity Low_complexity 1 44 0 5 1495 252 0 0 0 chr1 119365132 119365160 -77830272 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1495 503 296 80 0 chr1 119366291 119366416 -77829016 + RSINE1 SINE B4 12 146 -19 5 1495 364 237 42 31 chr1 119366457 119366553 -77828879 + B3A SINE B2 18 114 -84 5 1495 3232 239 14 14 chr1 119366728 119367619 -77827813 - Lx5 LINE L1 -4 7054 6184 5 1495 225 307 124 47 chr1 119367619 119367845 -77827587 + B4 SINE B4 26 273 -19 5 1495 2960 26 2 149 chr1 119368127 119368582 -77826850 - RLTR10 LTR ERVK -2 388 1 5 1495 8353 22 0 1 chr1 119368584 119369580 -77825852 - RLTR10-int LTR ERVK -3 1984 990 5 1495 7822 45 5 5 chr1 119369658 119370664 -77824768 - RLTR10-int LTR ERVK -999 988 6 5 1495 2971 23 2 149 chr1 119370664 119371119 -77824313 - RLTR10 LTR ERVK -2 388 1 5 1495 303 264 5 42 chr1 119371244 119371362 -77824070 + CT-rich Low_complexity Low_complexity 1 113 0 5 1495 272 287 11 11 chr1 119371447 119371535 -77823897 + L2b LINE L2 3286 3373 -2 5 1495 287 280 64 11 chr1 119371615 119371709 -77823723 + PB1D10 SINE Alu 9 107 -10 5 1495 400 312 79 79 chr1 119371725 119371965 -77823467 + B4A SINE B4 9 248 -44 5 1495 546 57 0 0 chr1 119372711 119372781 -77822651 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1495 299 361 0 89 chr1 119372788 119372934 -77822498 - RSINE1 SINE B4 -6 159 27 5 1495 21 0 0 0 chr1 119374968 119374989 -77820443 + AT_rich Low_complexity Low_complexity 1 21 0 5 1495 253 288 75 17 chr1 119375936 119376056 -77819376 - L1M4 LINE L1 -501 5677 5551 5 1495 34892 35 11 11 chr1 119376203 119377853 -77817579 - L1Md_T LINE L1 0 6582 4914 5 1495 228 183 46 77 chr1 119377853 119377918 -77817514 + RMER20A LTR ERVK 186 248 -268 5 1495 34892 35 11 11 chr1 119377918 119381583 -77813849 - L1Md_T LINE L1 0 4913 1203 5 1495 9587 20 2 0 chr1 119381549 119383081 -77812351 - L1Md_Gf LINE L1 -5380 1142 1 5 1495 2339 244 35 92 chr1 119383411 119384414 -77811018 + RMER17B LTR ERVK 1 899 -9 5 1495 420 290 111 6 chr1 119384705 119384955 -77810477 - MTD LTR MaLR -14 407 78 5 1495 643 176 27 112 chr1 119384974 119385050 -77810382 - Lx9 LINE L1 -6 7638 7568 5 1495 1669 26 0 5 chr1 119385050 119385243 -77810189 - B2_Mm1a SINE B2 -1 192 1 5 1495 643 176 27 112 chr1 119385243 119385298 -77810134 - Lx9 LINE L1 -77 7567 7524 5 1495 1618 125 100 186 chr1 119385298 119385818 -77809614 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1495 643 176 27 112 chr1 119385818 119385909 -77809523 - Lx9 LINE L1 -121 7523 7434 5 1495 258 259 0 0 chr1 119385910 119385964 -77809468 + Lx9 LINE L1 7225 7278 -366 5 1495 918 253 27 107 chr1 119385967 119386379 -77809053 - MTE2a LTR MaLR 0 379 1 5 1495 290 366 39 82 chr1 119386436 119386644 -77808788 - B3A SINE B2 -13 203 5 5 1495 867 292 196 3 chr1 119387588 119387945 -77807487 + Lx9 LINE L1 6318 6743 -901 5 1495 374 311 101 30 chr1 119388015 119388214 -77807218 + ID_B1 SINE B4 3 215 -9 5 1495 327 351 61 27 chr1 119388451 119388744 -77806688 - L1MEc LINE L1 -3483 2836 2534 5 1495 328 320 52 11 chr1 119388798 119388972 -77806460 - L1MEc LINE L1 -4883 1517 1337 5 1495 252 0 0 0 chr1 119389268 119389296 -77806136 + (CATA)n Simple_repeat Simple_repeat 1 28 0 5 1495 483 18 0 0 chr1 119389480 119389536 -77805896 + (CATA)n Simple_repeat Simple_repeat 4 59 0 5 1495 822 316 56 119 chr1 119389824 119390251 -77805181 + MTD LTR MaLR 20 419 0 5 1495 303 192 0 0 chr1 119390299 119390351 -77805081 + B4A SINE B4 2 53 -239 5 1495 450 281 7 79 chr1 119390359 119390498 -77804934 + B4 SINE B4 164 292 0 5 1495 245 154 39 0 chr1 119390533 119390585 -77804847 + (CAGAGA)n Simple_repeat Simple_repeat 6 59 0 5 1495 340 319 57 51 chr1 119392031 119392365 -77803067 - L1MC3 LINE L1 -1753 6032 5697 5 1495 301 294 76 5 chr1 119392931 119393129 -77802303 + L1MD LINE L1 4582 4793 -1353 5 1495 295 252 76 70 chr1 119393228 119393344 -77802088 - L1MD LINE L1 -990 5156 5032 5 1495 1582 42 0 5 chr1 119393344 119393536 -77801896 - B2_Mm1t SINE B2 -2 191 1 5 1495 295 252 76 70 chr1 119393536 119393590 -77801842 - L1MD LINE L1 -1115 5031 4985 5 1495 311 374 70 19 chr1 119393996 119394211 -77801221 - RMER15 LTR ERVL -13 562 337 5 1495 6886 88 30 0 chr1 119394235 119395228 -77800204 - L1_Mus1 LINE L1 0 6567 5545 5 1495 411 237 22 21 chr1 119395342 119395473 -77799959 - ORR1D2 LTR MaLR 0 379 241 5 1495 296 309 119 24 chr1 119395594 119395798 -77799634 - ORR1D2-int LTR MaLR -30 1550 1172 5 1495 25 0 0 0 chr1 119395803 119395828 -77799604 + AT_rich Low_complexity Low_complexity 1 25 0 5 1495 992 306 9 53 chr1 119395829 119396167 -77799265 - ORR1D2-int LTR MaLR -273 1097 775 5 1495 954 144 106 0 chr1 119396401 119396589 -77798843 - Lx LINE L1 -2 6652 6445 5 1495 4154 101 63 8 chr1 119396587 119397620 -77797812 + Lx LINE L1 5140 6215 -439 6 1495 1648 161 10 13 chr1 119397689 119397997 -77797435 - Lx2 LINE L1 0 6997 6691 6 1495 186 103 0 0 chr1 119398244 119398273 -77797159 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1495 610 178 25 13 chr1 119398288 119398447 -77796985 + G-rich Low_complexity Low_complexity 1 161 0 6 1495 3081 63 0 8 chr1 119398465 119398864 -77796568 - MTA_Mm LTR MaLR 0 396 1 6 1495 24 32 0 0 chr1 119398867 119398898 -77796534 + AT_rich Low_complexity Low_complexity 1 31 0 6 1495 1709 262 32 0 chr1 119398968 119399369 -77796063 + MTD LTR MaLR 1 414 -5 6 1495 649 274 90 20 chr1 119399910 119400111 -77795321 + B3 SINE B2 2 216 0 6 1495 668 283 48 21 chr1 119400200 119400388 -77795044 + ID_B1 SINE B4 16 208 -16 6 1495 503 331 6 44 chr1 119400858 119401016 -77794416 + RSINE1 SINE B4 14 165 0 6 1495 543 374 0 28 chr1 119402501 119402677 -77792755 + B4 SINE B4 122 292 0 6 1495 180 125 0 0 chr1 119402680 119402712 -77792720 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1495 210 91 0 0 chr1 119402730 119402763 -77792669 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1495 2589 156 34 21 chr1 119402943 119403408 -77792024 + Lx2B LINE L1 6530 7000 0 6 1495 196 53 53 0 chr1 119404007 119404045 -77791387 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1495 1065 95 0 7 chr1 119404045 119404193 -77791239 - B1_Mus1 SINE Alu 0 148 2 6 1495 590 293 9 95 chr1 119404686 119404897 -77790535 - B4A SINE B4 -4 288 96 6 1495 3904 47 0 0 chr1 119405143 119405613 -77789819 - L1_Mus1 LINE L1 0 6567 6098 6 1495 891 341 112 16 chr1 119405762 119406340 -77789092 - Lx8 LINE L1 -137 7336 6703 6 186 1846 213 26 11 chr1 119406383 119406763 -77788669 - ORR1B1 LTR MaLR -8 386 1 6 1496 432 323 115 6 chr1 119406781 119406803 -77788629 - Lx8 LINE L1 -820 6653 6632 6 1496 206 62 31 0 chr1 119406803 119406835 -77788597 + (TTG)n Simple_repeat Simple_repeat 3 35 0 6 1496 432 323 115 6 chr1 119406835 119406977 -77788455 - Lx8 LINE L1 -842 6631 6471 6 1496 426 20 0 0 chr1 119407527 119407578 -77787854 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1496 450 325 61 27 chr1 119407921 119408215 -77787217 + L1MC LINE L1 5499 5802 -2080 6 1496 432 0 0 0 chr1 119408433 119408481 -77786951 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1496 2274 136 16 29 chr1 119408997 119409376 -77786056 - Lx2 LINE L1 0 6997 6624 6 1496 1354 200 74 14 chr1 119409464 119409748 -77785684 + MTB_Mm LTR MaLR 1 301 -106 6 1496 1293 186 22 22 chr1 119409758 119410027 -77785405 - Lx2B LINE L1 -23 6977 6709 6 1496 1965 127 27 7 chr1 119410028 119410329 -77785103 + Lx2B LINE L1 6412 6718 -282 6 1496 288 167 193 0 chr1 119410329 119410401 -77785031 + MTB_Mm LTR MaLR 289 390 -31 6 1496 261 0 0 0 chr1 119410431 119410460 -77784972 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 6 1496 1455 202 81 81 chr1 119410461 119410881 -77784551 - Lx4B LINE L1 -17 7041 6622 6 1496 238 191 0 0 chr1 119410882 119410924 -77784508 + MTB_Mm LTR MaLR 380 421 0 6 1496 372 152 0 0 chr1 119412748 119412814 -77782618 + CT-rich Low_complexity Low_complexity 1 66 0 6 1496 186 133 0 0 chr1 119412826 119412856 -77782576 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1496 1315 66 33 0 chr1 119412928 119413110 -77782322 - B2_Mm1t SINE B2 -4 189 2 6 1496 279 0 0 0 chr1 119413228 119413259 -77782173 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1496 634 303 65 4 chr1 119413272 119413517 -77781915 + Lx8 LINE L1 6541 6800 -673 6 1496 2455 177 80 8 chr1 119413783 119414273 -77781159 - RLTR11A LTR ERVK -3 525 1 6 1496 602 168 119 0 chr1 119414274 119414417 -77781015 - MYSERV16_I-int LTR ERVK -1 2325 2166 6 1496 596 318 0 0 chr1 119414428 119414607 -77780825 - MYSERV16_I-int LTR ERVK -7995 964 786 6 1496 538 283 25 29 chr1 119414607 119414811 -77780621 - MurERV4-int LTR ERVK -4339 921 719 6 1496 22 35 0 0 chr1 119414950 119414979 -77780453 + AT_rich Low_complexity Low_complexity 1 29 0 6 1496 251 54 0 26 chr1 119416217 119416255 -77779177 + (CAT)n Simple_repeat Simple_repeat 2 38 0 6 1496 1241 242 64 53 chr1 119416952 119417388 -77778044 - BGLII_B LTR ERVK 0 441 1 6 1496 295 113 121 145 chr1 119418583 119418666 -77776766 - RMER19B LTR ERVK -475 427 347 6 1496 1144 232 75 12 chr1 119418701 119419046 -77776386 - L1_Rod LINE L1 -3252 2595 2229 6 1496 2494 101 3 3 chr1 119419612 119419971 -77775461 - Lx2 LINE L1 -1 6996 6638 6 1496 725 231 57 9 chr1 119419971 119420181 -77775251 - L1_Rod LINE L1 -3598 2249 2030 6 1496 574 320 45 40 chr1 119420326 119420528 -77774904 + ID_B1 SINE B4 2 204 -20 6 1496 26 0 0 0 chr1 119420782 119420808 -77774624 + AT_rich Low_complexity Low_complexity 1 26 0 6 1496 230 256 338 14 chr1 119420815 119420954 -77774478 - B3A SINE B2 -11 187 4 6 1496 396 294 0 18 chr1 119420995 119421106 -77774326 - RSINE1 SINE B4 -42 123 15 6 1496 22 0 0 0 chr1 119421165 119421187 -77774245 + AT_rich Low_complexity Low_complexity 1 22 0 6 1496 23 0 0 0 chr1 119422285 119422308 -77773124 + AT_rich Low_complexity Low_complexity 1 23 0 6 1496 584 124 9 0 chr1 119422707 119422812 -77772620 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1496 1416 258 18 3 chr1 119422956 119423290 -77772142 - Lx5 LINE L1 -533 6517 6179 6 1496 2224 270 36 11 chr1 119423295 119423816 -77771616 + Lx5 LINE L1 6508 7041 -9 6 1496 650 113 0 9 chr1 119423818 119423925 -77771507 + (GAAA)n Simple_repeat Simple_repeat 4 109 0 6 1496 206 289 171 16 chr1 119424120 119424243 -77771189 - MIRc SINE MIR -121 147 6 6 1496 865 299 39 21 chr1 119424683 119424963 -77770469 + B4A SINE B4 3 287 -5 6 1496 1123 63 0 0 chr1 119425416 119425558 -77769874 + B1_Mus2 SINE Alu 3 144 -3 6 1496 432 0 0 0 chr1 119425564 119425612 -77769820 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 6 1496 564 56 0 0 chr1 119425612 119425683 -77769749 + (GGGA)n Simple_repeat Simple_repeat 2 73 0 6 1496 695 161 26 6 chr1 119425725 119425881 -77769551 + A-rich Low_complexity Low_complexity 1 159 0 6 1496 2710 193 58 5 chr1 119427054 119427356 -77768076 - MusHAL1 LINE L1 -1526 1186 852 6 1496 213 39 0 0 chr1 119427356 119427382 -77768050 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1496 2710 193 58 5 chr1 119427382 119427720 -77767712 - MusHAL1 LINE L1 -1861 851 513 6 1496 15230 181 31 16 chr1 119427708 119429899 -77765533 + L1_Mur1 LINE L1 2421 4646 -1240 6 1496 207 0 0 0 chr1 119429899 119429922 -77765510 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1496 15230 181 31 16 chr1 119429922 119430940 -77764492 + L1_Mur1 LINE L1 4647 5680 -206 6 1496 642 268 93 39 chr1 119430924 119431216 -77764216 - Lx5 LINE L1 -566 6894 6464 6 1496 1041 150 0 0 chr1 119431247 119431427 -77764005 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1496 1780 142 18 75 chr1 119431441 119431776 -77763656 + ORR1A3 LTR MaLR 3 318 -8 6 1496 996 288 59 21 chr1 119431890 119432227 -77763205 + Lx5 LINE L1 6045 6394 -656 6 1496 232 210 32 0 chr1 119432306 119432368 -77763064 + T-rich Low_complexity Low_complexity 1 64 0 6 1496 343 261 217 8 chr1 119432368 119432488 -77762944 - B1_Mm SINE Alu -1 146 2 6 1496 793 285 54 87 chr1 119432792 119432877 -77762555 + L1MA4A LINE L1 5337 5425 -422 6 1496 788 242 6 0 chr1 119432877 119433038 -77762394 + U1 snRNA snRNA 1 162 -3 6 1496 892 289 49 78 chr1 119433038 119433576 -77761856 + L1MA4A LINE L1 5426 5973 -1500 6 1496 535 308 0 0 chr1 119433947 119434064 -77761368 + MT2A LTR ERVL 276 392 -141 6 1496 289 302 177 0 chr1 119434900 119434996 -77760436 - ID_B1 SINE B4 -19 205 93 6 1496 198 103 0 0 chr1 119435816 119435845 -77759587 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 1496 810 320 12 28 chr1 119436281 119436535 -77758897 + B4 SINE B4 2 251 -41 6 1496 224 353 125 40 chr1 119436870 119437118 -77758314 - L2 LINE L2 -487 2932 2664 6 1496 472 316 72 32 chr1 119437348 119437626 -77757806 - B4A SINE B4 -2 290 2 6 1496 432 0 0 0 chr1 119437753 119437801 -77757631 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1496 207 0 0 0 chr1 119437803 119437826 -77757606 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1496 1478 22 0 6 chr1 119437826 119438005 -77757427 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 6 1496 362 254 7 0 chr1 119438332 119438474 -77756958 + (TG)n Simple_repeat Simple_repeat 2 144 0 6 1496 301 374 32 0 chr1 119439125 119439248 -77756184 + B4A SINE B4 2 128 -164 6 1496 248 322 41 50 chr1 119439399 119439520 -77755912 - RMER12 LTR ERVK -474 848 729 6 1496 2281 168 7 7 chr1 119440530 119440944 -77754488 - Lx4A LINE L1 -625 6433 6020 6 1496 283 159 67 11 chr1 119441038 119441127 -77754305 + (TTTAA)n Simple_repeat Simple_repeat 3 96 0 6 1496 375 23 0 0 chr1 119441315 119441359 -77754073 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1496 330 26 0 0 chr1 119441359 119441397 -77754035 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1496 496 151 11 44 chr1 119441397 119441487 -77753945 - B1_Mur3 SINE Alu -9 140 54 6 1496 1252 299 27 24 chr1 119441655 119442148 -77753284 + RMER15 LTR ERVL 22 575 0 6 1496 213 236 31 41 chr1 119442163 119442260 -77753172 + (CATATA)n Simple_repeat Simple_repeat 1 96 0 6 1496 414 0 0 0 chr1 119442296 119442342 -77753090 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1496 26 74 0 0 chr1 119442529 119442583 -77752849 + AT_rich Low_complexity Low_complexity 1 54 0 6 1496 963 265 59 35 chr1 119442735 119443034 -77752398 - MTEa LTR MaLR -13 366 82 6 1496 565 325 61 15 chr1 119443228 119443425 -77752007 - ORR1E LTR MaLR -128 231 26 6 1496 216 0 0 0 chr1 119443815 119443839 -77751593 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1496 32 43 0 0 chr1 119444064 119444110 -77751322 + AT_rich Low_complexity Low_complexity 1 46 0 6 1496 421 298 8 55 chr1 119444265 119444393 -77751039 - MTEa LTR MaLR -2 377 256 6 1496 352 338 21 7 chr1 119444416 119444556 -77750876 - MTEa LTR MaLR -217 142 1 6 1496 342 0 0 0 chr1 119444748 119444786 -77750646 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1496 270 0 0 0 chr1 119444786 119444816 -77750616 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1496 301 353 92 8 chr1 119445116 119445236 -77750196 + MTE2a LTR MaLR 8 137 -242 6 1496 583 370 27 46 chr1 119445169 119445540 -77749892 + MT2A LTR ERVL 72 435 -98 6 1496 30 45 0 0 chr1 119445618 119445662 -77749770 + AT_rich Low_complexity Low_complexity 1 44 0 6 1496 807 310 46 38 chr1 119445691 119446034 -77749398 - MLT2D LTR ERVL -47 350 1 7 1496 230 203 14 72 chr1 119446043 119446112 -77749320 + MT2B LTR ERVL 200 264 -337 7 1496 659 95 0 0 chr1 119446052 119446147 -77749285 + B1_Mm SINE Alu 53 147 0 7 1496 528 16 0 0 chr1 119446340 119446401 -77749031 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1496 279 0 0 0 chr1 119446401 119446431 -77749001 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1496 786 332 23 27 chr1 119446432 119446518 -77748914 - B4A SINE B4 -33 259 176 7 1496 2995 18 15 0 chr1 119446518 119446859 -77748573 - ORR1A0 LTR MaLR 0 346 1 7 1496 786 332 23 27 chr1 119446859 119447032 -77748400 - B4A SINE B4 -117 175 1 7 1496 234 156 0 0 chr1 119448612 119448657 -77746775 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 7 1496 242 381 88 7 chr1 119448683 119448831 -77746601 - B4 SINE B4 -81 211 52 7 1496 1098 173 203 58 chr1 119449125 119449450 -77745982 - ORR1D1 LTR MaLR 0 374 3 7 1496 264 240 104 19 chr1 119449561 119449667 -77745765 + RLTR14-int LTR ERV1 954 1068 -4249 7 1496 17567 95 14 13 chr1 119449678 119452528 -77742904 + L1VL4 LINE L1 2 2801 -758 7 1496 189 0 0 0 chr1 119452528 119452549 -77742883 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1496 17567 83 19 3 chr1 119452549 119453277 -77742155 + L1VL4 LINE L1 2802 3558 -1 7 1496 970 55 131 0 chr1 119453720 119453865 -77741567 - L1_Mus2 LINE L1 -2 6564 6401 7 1496 3753 137 8 0 chr1 119454622 119455243 -77740189 + L1VL1 LINE L1 136 761 -5661 7 1496 808 221 144 0 chr1 119455264 119455486 -77739946 + L1Md_F LINE L1 487 740 -5779 7 1496 757 144 8 0 chr1 119455488 119455606 -77739826 + ORR1A3 LTR MaLR 200 318 -8 7 1496 1058 172 167 8 chr1 119455610 119455856 -77739576 + ORR1A3-int LTR MaLR 1 285 -1678 7 1496 201 94 0 0 chr1 119455856 119455888 -77739544 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 7 1496 233 307 12 74 chr1 119456370 119456451 -77738981 + B4A SINE B4 2 77 -215 7 1496 1473 269 8 14 chr1 119456653 119457014 -77738418 + MTD LTR MaLR 1 359 -60 7 1496 2332 218 92 36 chr1 119457014 119457604 -77737828 - RMER20B LTR ERVK 0 627 5 7 1496 494 268 46 23 chr1 119457986 119458116 -77737316 - ETnERV2-int LTR ERVK -204 7202 7070 7 1496 401 178 7 4 chr1 119458118 119458193 -77737239 + ORR1A3 LTR MaLR 286 418 -1 7 1496 1182 54 0 0 chr1 119458415 119458562 -77736870 + B1_Mm SINE Alu 1 147 0 7 1496 261 75 0 0 chr1 119458562 119458602 -77736830 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1496 212 132 0 73 chr1 119458783 119458824 -77736608 - PB1D7 SINE Alu -1 119 82 7 1496 426 20 0 0 chr1 119459157 119459208 -77736224 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1496 965 169 118 10 chr1 119460261 119460464 -77734968 + URR1A DNA MER1_type 2 226 0 7 1496 23 0 0 0 chr1 119461269 119461292 -77734140 + AT_rich Low_complexity Low_complexity 1 23 0 7 1496 1416 247 45 8 chr1 119461299 119461790 -77733642 - Lx2B LINE L1 -1 6975 6428 7 1496 3911 135 124 38 chr1 119461787 119462703 -77732729 + L1_Mur2 LINE L1 1907 2901 -2976 7 1496 10470 195 77 29 chr1 119463058 119464093 -77731339 + L1_Mur1 LINE L1 803 2050 -3836 7 1496 402 21 0 0 chr1 119464093 119464140 -77731292 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1496 10470 188 111 28 chr1 119464140 119466053 -77729379 + L1_Mur1 LINE L1 2051 3985 -1901 7 1496 1468 39 28 0 chr1 119466053 119466231 -77729201 + B2_Mm1a SINE B2 3 185 -8 7 1496 10470 188 111 28 chr1 119466231 119466656 -77728776 + L1_Mur1 LINE L1 3986 4409 -1477 7 1496 3277 188 21 15 chr1 119466671 119467288 -77728144 + Lx2B LINE L1 6379 6999 -1 7 1496 7646 149 41 6 chr1 119467280 119468555 -77726877 + Lx4A LINE L1 5737 7055 -3 7 1496 416 77 15 0 chr1 119468557 119468622 -77726810 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 7 1496 619 234 77 134 chr1 119469262 119469717 -77725715 - RLTR23 LTR ERV1 -1 429 1 7 1496 246 374 23 35 chr1 119469915 119470001 -77725431 - RSINE1 SINE B4 -11 154 70 7 1496 294 312 62 28 chr1 119470258 119470403 -77725029 + MER21B LTR ERV1 134 283 -580 7 1496 24 32 0 0 chr1 119471585 119471616 -77723816 + AT_rich Low_complexity Low_complexity 1 31 0 7 1496 320 320 106 109 chr1 119471620 119471904 -77723528 + B4 SINE B4 10 292 0 7 1496 189 0 0 0 chr1 119472175 119472196 -77723236 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1496 432 55 0 0 chr1 119472468 119472523 -77722909 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1496 1278 72 0 32 chr1 119472547 119472733 -77722699 - L1_Mus2 LINE L1 0 6566 6387 7 1496 484 299 71 48 chr1 119473313 119473608 -77721824 - Lx8 LINE L1 -19 7454 7153 7 1496 482 364 49 5 chr1 119473733 119473918 -77721514 - B3A SINE B2 -3 195 3 7 1496 6870 88 5 9 chr1 119473939 119474954 -77720478 - L1_Mus3 LINE L1 0 6638 5628 7 1496 267 299 117 29 chr1 119476302 119476453 -77718979 + MIR3 SINE MIR 43 197 -11 7 1496 1744 141 0 10 chr1 119476977 119477271 -77718161 + L1VL1 LINE L1 1 291 -6131 7 1496 7382 96 1 5 chr1 119477270 119478707 -77716725 + L1Md_A LINE L1 935 2365 -3518 7 1496 6087 116 49 1 chr1 119478706 119480311 -77715121 + L1Md_F LINE L1 515 2199 -3684 7 1496 1451 31 0 68 chr1 119480311 119480517 -77714915 + RLTRETN_Mm LTR ERVK 1 192 -130 7 1496 7820 7 0 2 chr1 119480517 119481433 -77713999 - L1Md_T LINE L1 -3 6579 5666 7 1496 1169 101 8 46 chr1 119481433 119481631 -77713801 + RLTRETN_Mm LTR ERVK 179 403 0 7 1496 14832 96 1 4 chr1 119481631 119483897 -77711535 + L1_Mm LINE L1 2194 4453 -1430 7 1496 33199 51 2 8 chr1 119483900 119489363 -77706069 + L1Md_T LINE L1 59 5589 -297 7 1496 8229 37 3 4 chr1 119489364 119490359 -77705073 + L1Md_T LINE L1 5591 6584 -1 7 1496 8322 95 2 2 chr1 119490359 119491589 -77703843 + L1_Mm LINE L1 4447 5676 -207 7 1496 2534 78 0 0 chr1 119491580 119491965 -77703467 + L1_Mm LINE L1 1317 1701 -4182 7 1496 457 332 99 27 chr1 119492380 119492603 -77702829 - B4 SINE B4 -52 240 2 7 1496 300 265 0 0 chr1 119492614 119492712 -77702720 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 7 1496 233 57 0 28 chr1 119492905 119492941 -77702491 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 7 1496 335 336 48 8 chr1 119492982 119493108 -77702324 - RSINE1 SINE B4 -3 162 32 7 1496 2371 118 8 3 chr1 119493885 119494242 -77701190 - L1_Mus3 LINE L1 0 6638 6280 7 1496 448 360 39 19 chr1 119494313 119494520 -77700912 - ID_B1 SINE B4 -1 223 13 7 1496 1034 88 0 0 chr1 119494547 119494683 -77700749 - B1_Mus1 SINE Alu -12 136 1 7 1496 5450 188 8 12 chr1 119494789 119494864 -77700568 - Lx2 LINE L1 0 6997 6925 7 1496 3410 20 10 0 chr1 119494864 119495256 -77700176 + MTA_Mm LTR MaLR 1 396 0 7 1496 5450 188 8 12 chr1 119495256 119496256 -77699176 - Lx2 LINE L1 -73 6924 5926 7 1496 243 396 41 41 chr1 119496293 119496438 -77698994 - RSINE1 SINE B4 0 165 21 7 1496 580 359 8 41 chr1 119496429 119496673 -77698759 - B4A SINE B4 -56 236 1 7 1496 623 278 47 0 chr1 119497014 119497205 -77698227 - Lx4B LINE L1 -258 6800 6601 7 1496 6089 121 7 16 chr1 119497214 119498648 -77696784 + L1_Mus2 LINE L1 5146 6566 0 7 1496 973 138 0 0 chr1 119498659 119498797 -77696635 + B1_Mus2 SINE Alu 2 139 -8 7 1496 218 32 32 0 chr1 119498797 119498828 -77696604 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1496 783 204 0 6 chr1 119498868 119499041 -77696391 - Lx4B LINE L1 -453 6605 6434 7 1496 276 293 0 0 chr1 119499365 119499423 -77696009 - B1_Mus1 SINE Alu -82 66 9 7 1496 681 253 17 60 chr1 119501228 119501463 -77693969 - URR1B DNA MER1_type 0 225 1 1 1496 983 131 95 6 chr1 119501732 119501901 -77693531 - L1_Mus2 LINE L1 0 6566 6383 2 1496 1639 125 4 6 chr1 119501929 119502210 -77693222 - L1_Mm LINE L1 -3238 2609 2344 3 1496 356 274 15 15 chr1 119502195 119502332 -77693100 + MurSatRep1 Unknown Unknown 606 742 -1395 4 1496 1037 90 14 0 chr1 119502695 119502840 -77692592 + B1_Mus1 SINE Alu 2 148 0 5 1496 1336 194 43 30 chr1 119503362 119503665 -77691767 - Lx3B LINE L1 -4 6969 6663 6 1496 3693 81 4 29 chr1 119503666 119504190 -77691242 + L1_Mus1 LINE L1 6057 6567 0 7 1496 26 0 0 0 chr1 119504517 119504543 -77690889 + AT_rich Low_complexity Low_complexity 1 26 0 8 1496 6039 147 7 4 chr1 119504545 119505717 -77689715 - Lx3B LINE L1 -302 6671 5496 6 1496 3433 195 38 13 chr1 119505719 119506590 -77688842 - Lx3B LINE L1 -1010 4867 3975 6 1496 719 102 0 0 chr1 119506818 119506926 -77688506 - L1_Mus4 LINE L1 -937 5699 5592 9 1496 1433 248 62 25 chr1 119506928 119507269 -77688163 - RMER17A LTR ERVK -2 807 467 1 1496 1030 115 6 6 chr1 119507269 119507444 -77687988 + (GGGAGA)n Simple_repeat Simple_repeat 3 177 0 1 1496 2180 107 35 20 chr1 119507444 119507738 -77687694 - RMER17A LTR ERVK -343 466 59 1 1496 4166 29 12 2 chr1 119507738 119508226 -77687206 - MT2_Mm LTR ERVL 0 493 1 1 1496 2180 105 34 20 chr1 119508226 119508283 -77687149 - RMER17A LTR ERVK -693 58 1 1 1496 12100 191 46 15 chr1 119508285 119511497 -77683935 - L1_Mur1 LINE L1 -287 5596 2035 1 1496 2397 243 28 22 chr1 119511482 119512063 -77683369 - Lx3B LINE L1 -2419 3458 2882 6 1496 827 70 0 9 chr1 119512063 119512179 -77683253 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 1 1496 2397 243 28 22 chr1 119512179 119512460 -77682972 - Lx3B LINE L1 -2996 2881 2588 6 1496 267 31 0 0 chr1 119512460 119512492 -77682940 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1496 2397 243 28 22 chr1 119512492 119512527 -77682905 - Lx3B LINE L1 -3290 2587 2555 6 1496 32027 81 2 1 chr1 119512515 119518717 -77676715 - L1Md_F2 LINE L1 -12 6570 360 1 1496 1157 254 36 9 chr1 119518722 119519167 -77676265 - Lx3B LINE L1 -3970 1916 1460 6 1496 448 229 9 0 chr1 119519163 119519272 -77676160 - Lx3C LINE L1 -704 6272 6163 1 1496 330 188 0 0 chr1 119519273 119519337 -77676095 - L1_Mur1 LINE L1 -464 5422 5359 1 1496 276 186 0 0 chr1 119519352 119519411 -77676021 + CT-rich Low_complexity Low_complexity 2 60 0 1 1496 1723 221 46 12 chr1 119519423 119519839 -77675593 - Lx3C LINE L1 -4 6972 6543 2 1496 4069 156 20 11 chr1 119519837 119520684 -77674748 - MusHAL1 LINE L1 -1752 960 106 2 1496 931 170 0 0 chr1 119520704 119520851 -77674581 - B1_Mus2 SINE Alu 0 147 1 2 1496 2364 186 22 24 chr1 119520854 119521349 -77674083 - L1VL4 LINE L1 -5602 700 207 2 1496 638 207 24 24 chr1 119522055 119523959 -77671473 + MMSAT4 Satellite Satellite 1 1904 0 2 1496 240 291 43 43 chr1 119523993 119524133 -77671299 + MMSAT4 Satellite Satellite 29 168 0 2 1496 24 0 0 0 chr1 119524920 119524944 -77670488 + AT_rich Low_complexity Low_complexity 1 24 0 2 1496 1608 177 4 0 chr1 119525174 119525435 -77669997 - MTB_Mm LTR MaLR -1 406 145 2 1496 1095 278 56 0 chr1 119525435 119525705 -77669727 - RMER13B LTR ERVK 0 908 624 2 1496 2400 196 43 0 chr1 119525707 119526147 -77669285 - RMER13B LTR ERVK -447 461 3 2 1496 605 153 96 102 chr1 119526147 119526307 -77669125 - MTB_Mm LTR MaLR -248 148 3 2 1496 4707 98 36 6 chr1 119526345 119527032 -77668400 - L1Md_F2 LINE L1 -13 6569 5862 2 1496 7205 75 6 1 chr1 119527036 119528146 -77667286 - L1Md_F3 LINE L1 -8 6576 5461 3 1496 2293 182 60 23 chr1 119528148 119528665 -77666767 - MT-int LTR MaLR 0 1098 563 3 1496 943 141 6 0 chr1 119528665 119528842 -77666590 + MusHAL1 LINE L1 1345 1522 -1190 3 1496 2606 43 9 39 chr1 119528842 119529179 -77666253 - IAPLTR2b LTR ERVK 0 327 1 3 1496 5441 53 13 20 chr1 119529181 119529930 -77665502 - IAPEz-int LTR ERVK -2 6479 5736 3 1496 2183 50 0 0 chr1 119529929 119530207 -77665225 - IAPEz-int LTR ERVK -4845 1636 1359 3 1496 3352 65 1 16 chr1 119530207 119530785 -77664647 - IAPEz-int LTR ERVK -5819 662 168 3 1496 248 309 0 0 chr1 119530785 119530840 -77664592 - RLTR27 LTR ERVK -34 275 221 3 1496 248 302 0 0 chr1 119530866 119530919 -77664513 - RLTR27 LTR ERVK -34 275 223 3 1496 846 119 112 6 chr1 119530919 119531088 -77664344 - IAPEz-int LTR ERVK -6286 195 9 3 1496 2766 21 3 38 chr1 119531089 119531428 -77664004 - IAPLTR2b LTR ERVK 0 327 1 3 1496 3681 171 5 4 chr1 119531428 119532189 -77663243 + MusHAL1 LINE L1 1517 2278 -434 3 1496 5783 149 8 27 chr1 119532200 119533322 -77662110 + L1_Mus2 LINE L1 173 1273 -5451 3 23 35011 27 2 7 chr1 119533323 119538493 -77656939 + L1Md_T LINE L1 449 5586 -297 3 1497 8196 47 0 0 chr1 119538493 119539489 -77655943 + L1Md_T LINE L1 5587 6582 0 3 1497 4743 111 2 11 chr1 119539491 119540232 -77655200 + L1_Mus2 LINE L1 1257 1995 -3888 3 1497 2177 174 60 28 chr1 119540232 119540699 -77654733 + RLTR45 LTR ERVK 1 482 0 3 1497 4743 111 2 11 chr1 119540699 119540767 -77654665 + L1_Mus2 LINE L1 1996 2059 -3824 3 1497 9964 139 119 5 chr1 119540807 119541615 -77653817 + L1_Mus2 LINE L1 3696 4732 -1151 3 1497 207 0 0 0 chr1 119541615 119541638 -77653794 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1497 9964 127 57 3 chr1 119541638 119543476 -77651956 + L1_Mus2 LINE L1 4733 6566 0 3 1497 558 43 0 0 chr1 119543545 119543614 -77651818 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1497 1553 131 41 0 chr1 119543614 119543881 -77651551 - L1_Mm LINE L1 -1614 4269 3992 4 1497 3120 157 24 30 chr1 119543873 119544241 -77651191 + L1VL2 LINE L1 419 799 -5536 4 1497 1036 165 11 11 chr1 119544241 119544431 -77651001 + B2_Mm1t SINE B2 1 190 -3 4 1497 10633 151 13 19 chr1 119544431 119546620 -77648812 + L1VL2 LINE L1 800 2963 -652 4 1497 5034 125 52 49 chr1 119546620 119547519 -77647913 + RLTR13D6 LTR ERVK 1 902 0 4 1497 10633 150 12 19 chr1 119547519 119547554 -77647878 + L1VL2 LINE L1 2964 2993 -622 4 1497 7220 149 34 5 chr1 119547551 119548954 -77646478 + L1_Mus1 LINE L1 2794 4236 -1647 4 1497 234 89 0 0 chr1 119548944 119548989 -77646443 + L1_Mus2 LINE L1 6522 6566 0 4 1497 6756 102 1 8 chr1 119548993 119550279 -77645153 + L1_Mus1 LINE L1 5291 6567 0 4 1497 3073 23 0 0 chr1 119550559 119550905 -77644527 + ORR1A0 LTR MaLR 1 346 0 4 1497 4671 89 1 26 chr1 119550907 119551255 -77644177 + ORR1A0-int LTR MaLR 3 338 -1454 4 1497 2485 53 16 0 chr1 119551255 119551573 -77643859 + L1Md_F2 LINE L1 6247 6569 -13 4 1497 4671 89 1 26 chr1 119551573 119551966 -77643466 + ORR1A0-int LTR MaLR 339 726 -1066 4 1497 2743 77 3 3 chr1 119551966 119552331 -77643101 - RLTR10B2 LTR ERVK 0 365 1 5 1497 4017 88 1 97 chr1 119552331 119553013 -77642419 - MMERVK10C-int LTR ERVK 0 7581 6965 5 1497 1459 96 100 0 chr1 119553013 119553242 -77642190 - IAP-d-int LTR ERVK -1287 5255 5004 5 1497 367 303 26 26 chr1 119553344 119553534 -77641898 - IAP-d-int LTR ERVK -5531 1011 822 5 1497 2604 60 121 5 chr1 119553674 119554080 -77641352 - RLTR10-int LTR ERVK -995 992 553 5 1497 450 83 47 47 chr1 119554080 119554207 -77641225 + CT-rich Low_complexity Low_complexity 3 129 0 5 1497 306 48 24 0 chr1 119554296 119554338 -77641094 - MMERVK10C-int LTR ERVK -7314 267 225 5 1497 241 227 0 0 chr1 119554338 119554382 -77641050 - RLTR27 LTR ERVK -34 275 232 5 1497 733 78 0 0 chr1 119554384 119554486 -77640946 - MMERVK10C-int LTR ERVK -7479 102 1 5 1497 2842 52 5 14 chr1 119554486 119554854 -77640578 - RLTR10B2 LTR ERVK 0 365 1 5 1497 6386 62 1 1 chr1 119554854 119555696 -77639736 + ORR1A0-int LTR MaLR 721 1562 -230 5 1497 2481 42 26 0 chr1 119555691 119556004 -77639428 + ORR1A0 LTR MaLR 26 346 0 5 1497 214 385 0 0 chr1 119556026 119556091 -77639341 - PB1D9 SINE Alu -53 67 3 5 1497 739 267 17 60 chr1 119557890 119558125 -77637307 - URR1B DNA MER1_type 0 225 1 5 1497 1169 133 6 0 chr1 119558394 119558575 -77636857 - L1_Mus2 LINE L1 0 6566 6385 5 1497 1449 126 58 7 chr1 119558607 119558875 -77636557 - L1_Mm LINE L1 -3238 2609 2344 6 1497 288 279 29 29 chr1 119558860 119559000 -77636432 + MurSatRep1 Unknown Unknown 606 745 -1392 6 1497 966 111 14 0 chr1 119559361 119559505 -77635927 + B1_Mus1 SINE Alu 2 147 -1 6 1497 1228 193 33 40 chr1 119559927 119560202 -77635230 - RLTR46 LTR ERVK -5 315 43 6 1497 1297 191 46 30 chr1 119560314 119560616 -77634816 - Lx3B LINE L1 -4 6969 6663 6 1497 3649 97 6 0 chr1 119560619 119561125 -77634307 + L1_Mus1 LINE L1 6059 6567 0 6 1497 23 0 0 0 chr1 119561383 119561406 -77634026 + AT_rich Low_complexity Low_complexity 1 23 0 6 1497 6205 140 5 4 chr1 119561479 119562648 -77632784 - Lx3B LINE L1 -304 6669 5499 6 1497 3561 210 26 6 chr1 119562653 119563528 -77631904 - L1_Mur2 LINE L1 -1010 4867 3975 6 1497 5287 196 173 13 chr1 119563756 119563862 -77631570 - L1_Mur2 LINE L1 -184 5699 5594 6 1497 3296 138 123 25 chr1 119563862 119564194 -77631238 - RMER17A LTR ERVK 0 751 359 6 1497 687 81 0 0 chr1 119564194 119564293 -77631139 + (GA)n Simple_repeat Simple_repeat 1 99 0 7 1497 3296 138 123 25 chr1 119564293 119564644 -77630788 - RMER17A LTR ERVK -393 358 2 6 1497 8161 196 173 13 chr1 119564644 119566217 -77629215 - L1_Mur2 LINE L1 -290 5593 3752 6 1497 3268 89 13 2 chr1 119566217 119566678 -77628754 - L1Md_F2 LINE L1 -1 6581 6116 7 1497 8161 213 37 158 chr1 119566678 119568335 -77627097 - L1_Mur2 LINE L1 -2122 3755 2651 6 1497 216 0 0 0 chr1 119568335 119568359 -77627073 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1497 8161 213 37 158 chr1 119568359 119569442 -77625990 - L1_Mur2 LINE L1 -3227 2650 1484 6 1497 369 260 29 0 chr1 119569465 119569569 -77625863 - Lx3C LINE L1 -707 6269 6163 7 1497 356 171 26 26 chr1 119569570 119569676 -77625756 - L1_Mur1 LINE L1 -464 5422 5309 7 1497 2497 136 9 2 chr1 119569663 119570129 -77625303 - MusHAL1 LINE L1 -2158 554 86 7 1497 246 32 0 0 chr1 119570129 119570160 -77625272 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1497 989 146 0 0 chr1 119570160 119570304 -77625128 - B1_Mus2 SINE Alu -3 144 1 7 1497 2506 182 35 6 chr1 119570306 119570792 -77624640 - L1VL4 LINE L1 -5596 706 207 7 1497 2019 128 36 50 chr1 119571005 119571366 -77624066 - RLTR45 LTR ERVK -124 358 3 7 1497 6491 57 8 2 chr1 119571368 119572205 -77623227 - RLTR45-int LTR ERVK 0 7244 6403 7 1497 365 223 0 109 chr1 119572710 119572767 -77622665 + MMSAT4 Satellite Satellite 30 86 -82 8 1497 5586 50 3 0 chr1 119572767 119573461 -77621971 - L1Md_F2 LINE L1 -2 6580 5885 8 1497 528 212 16 59 chr1 119573461 119573642 -77621790 + MMSAT4 Satellite Satellite 1 173 -1 8 1497 599 254 33 34 chr1 119573672 119574484 -77620948 + MMSAT4 Satellite Satellite 1 811 0 8 1497 303 275 30 48 chr1 119574593 119574810 -77620622 + MMSAT4 Satellite Satellite 1 212 0 8 1497 24 0 0 0 chr1 119575273 119575297 -77620135 + AT_rich Low_complexity Low_complexity 1 24 0 8 1497 2345 150 30 34 chr1 119575526 119575788 -77619644 - MTB_Mm LTR MaLR 0 407 147 8 1497 3826 232 41 15 chr1 119575788 119576671 -77618761 - RMER13B LTR ERVK 0 908 3 8 1497 2345 150 30 34 chr1 119576671 119576815 -77618617 - MTB_Mm LTR MaLR -261 146 3 8 1497 6616 95 13 5 chr1 119576850 119577948 -77617484 - L1Md_F2 LINE L1 -11 6571 5461 8 1497 2406 173 62 23 chr1 119577950 119578466 -77616966 - MT-int LTR MaLR 0 1098 563 8 1497 4498 165 16 1 chr1 119578466 119579386 -77616046 + MusHAL1 LINE L1 1345 2278 -434 8 1497 4362 153 36 1 chr1 119579401 119580198 -77615234 + L1Md_F LINE L1 283 1107 -5412 8 1497 32189 62 1 5 chr1 119580212 119585691 -77609741 + L1Md_F3 LINE L1 31 5589 -297 9 1497 7601 67 5 2 chr1 119585691 119586683 -77608749 + L1Md_F3 LINE L1 5590 6584 -3 9 1497 4145 83 0 13 chr1 119586683 119587284 -77608148 + L1Md_F2 LINE L1 4994 5586 -297 9 1497 7416 81 1 9 chr1 119587285 119588205 -77607227 + L1Md_F2 LINE L1 5588 6503 -79 9 1497 2617 119 20 145 chr1 119588205 119588756 -77606676 - RLTR45 LTR ERVK 0 482 1 9 1497 7416 81 1 9 chr1 119588756 119588836 -77606596 + L1Md_F2 LINE L1 6504 6580 -2 9 1497 706 139 426 46 chr1 119588842 119589105 -77606327 + L1_Mus1 LINE L1 1704 2066 -3817 9 1497 2871 88 19 0 chr1 119589139 119589571 -77605861 + L1_Mm LINE L1 3696 4135 -1748 9 1497 526 171 0 0 chr1 119589562 119589667 -77605765 + MusHAL1 LINE L1 224 328 -2384 9 1497 6931 142 21 16 chr1 119589661 119590972 -77604460 + L1_Mus1 LINE L1 2913 4230 -1653 9 1497 255 89 0 0 chr1 119590968 119591013 -77604419 + L1_Mus2 LINE L1 6522 6566 0 9 1497 6687 102 10 5 chr1 119591017 119592298 -77603134 + L1_Mus1 LINE L1 5286 6567 0 9 1497 727 249 17 60 chr1 119594469 119594704 -77600728 - URR1B DNA MER1_type 0 225 1 9 1497 1100 167 0 0 chr1 119594941 119595121 -77600311 - L1_Mus2 LINE L1 -2 6564 6385 9 1497 259 91 23 0 chr1 119595121 119595165 -77600267 - L1_Mus2 LINE L1 -313 6253 6209 9 1497 1615 121 4 6 chr1 119595153 119595433 -77599999 - L1_Mm LINE L1 -3238 2609 2344 9 1497 316 271 50 31 chr1 119595418 119595578 -77599854 + MurSatRep1 Unknown Unknown 606 768 -1369 1 1497 779 114 122 0 chr1 119595898 119596029 -77599403 + B1_Mus1 SINE Alu 2 148 0 1 1497 1551 151 61 31 chr1 119596532 119596825 -77598607 - Lx3B LINE L1 -10 6963 6662 1 1497 3590 96 26 0 chr1 119596824 119597323 -77598109 + L1_Mus1 LINE L1 6056 6567 0 1 1497 4324 167 15 10 chr1 119597691 119598513 -77596919 - Lx3B LINE L1 -293 6680 5855 1 1497 2874 21 0 43 chr1 119598513 119598865 -77596567 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1497 53245 21 17 1 chr1 119598865 119605238 -77590194 - IAPEz-int LTR ERVK 0 6481 8 1 1497 2874 21 0 43 chr1 119605238 119605590 -77589842 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1497 462 150 0 0 chr1 119605590 119605670 -77589762 - Lx3B LINE L1 -1116 5860 5781 1 1497 10312 199 28 7 chr1 119605684 119608162 -77587270 - L1_Mur1 LINE L1 -1531 4355 1825 1 1497 3620 129 22 26 chr1 119608153 119608756 -77586676 - L1VL2 LINE L1 -5505 830 231 1 1497 6429 232 62 26 chr1 119608840 119609887 -77585545 - L1_Mur2 LINE L1 -1949 3928 2882 1 1497 815 87 8 0 chr1 119609887 119610013 -77585419 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 1 1497 6429 232 62 26 chr1 119610013 119610228 -77585204 - L1_Mur2 LINE L1 -2996 2881 2651 1 1497 270 0 0 0 chr1 119610228 119610258 -77585174 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1497 6429 232 62 26 chr1 119610258 119611365 -77584067 - L1_Mur2 LINE L1 -3227 2650 1472 1 1497 360 266 11 0 chr1 119611372 119611466 -77583966 - Lx3C LINE L1 -705 6271 6177 1 1497 356 156 0 0 chr1 119611481 119611545 -77583887 - Lx3B LINE L1 -464 5422 5359 1 1497 270 179 0 0 chr1 119611560 119611616 -77583816 + CT-rich Low_complexity Low_complexity 2 57 0 1 1497 1768 212 56 12 chr1 119611634 119612045 -77583387 - Lx3B LINE L1 -4 6969 6541 1 1497 4522 135 9 6 chr1 119612041 119612893 -77582539 - MusHAL1 LINE L1 -1752 960 106 1 1497 670 49 0 29 chr1 119612893 119612998 -77582434 + (TTTTG)n Simple_repeat Simple_repeat 4 105 0 1 1497 805 152 8 0 chr1 119612999 119613124 -77582308 - B1_Mus1 SINE Alu -12 136 11 1 1497 695 143 16 16 chr1 119613132 119613260 -77582172 - L1VL4 LINE L1 -5596 706 579 1 1497 13927 92 30 0 chr1 119613259 119616088 -77579344 - L1Md_F2 LINE L1 -12 6570 3652 1 1497 35861 61 1 4 chr1 119616100 119622270 -77573162 - L1Md_T LINE L1 0 6582 217 1 1497 1414 225 22 96 chr1 119622271 119622688 -77572744 - L1VL4 LINE L1 -5710 592 207 1 1497 583 222 35 35 chr1 119623406 119624463 -77570969 + MMSAT4 Satellite Satellite 1 1057 0 1 1497 238 291 33 28 chr1 119624664 119624797 -77570635 + MMSAT4 Satellite Satellite 1 133 -6 1 1497 22 103 0 0 chr1 119625029 119625107 -77570325 + AT_rich Low_complexity Low_complexity 1 78 0 1 1497 2411 145 30 30 chr1 119625591 119625853 -77569579 - MTB_Mm LTR MaLR 0 407 151 1 1497 3856 226 59 11 chr1 119625853 119626720 -77568712 - RMER13B LTR ERVK 0 908 1 1 1497 2411 145 30 30 chr1 119626720 119626862 -77568570 - MTB_Mm LTR MaLR -257 150 3 1 1497 5902 108 36 7 chr1 119626900 119627979 -77567453 - L1Md_F2 LINE L1 -12 6570 5461 1 1497 2297 185 60 23 chr1 119627983 119628497 -77566935 - MT-int LTR MaLR -2 1096 564 1 1497 5162 138 4 1 chr1 119628498 119629426 -77566006 + MusHAL1 LINE L1 1345 2275 -437 1 1497 16880 128 42 32 chr1 119629427 119631467 -77563965 + L1Md_F LINE L1 173 2190 -3693 1 1497 2970 68 5 17 chr1 119631467 119631873 -77563559 - L1Md_F2 LINE L1 0 6582 6182 1 1497 16880 92 3 45 chr1 119631873 119632358 -77563074 + L1Md_F LINE L1 2191 2669 -3214 1 1497 2647 116 164 5 chr1 119632358 119632791 -77562641 - RLTR44C LTR ERVK 0 502 1 1 1497 16880 92 3 45 chr1 119632791 119634107 -77561325 + L1Md_F LINE L1 2670 3904 -1979 1 1497 1625 60 0 0 chr1 119634136 119634353 -77561079 - L1Md_T LINE L1 0 6582 6366 1 1497 1449 108 0 0 chr1 119634354 119634577 -77560855 + L1Md_F LINE L1 3907 4129 -1754 1 1497 556 79 22 22 chr1 119634577 119634668 -77560764 + L1_Mus1 LINE L1 6476 6566 -1 1 1497 287 347 16 71 chr1 119634886 119635013 -77560419 - B1_Mur4 SINE Alu -21 129 10 1 1497 669 236 21 64 chr1 119636823 119637058 -77558374 - URR1B DNA MER1_type 0 225 1 1 1497 21 0 0 0 chr1 119637226 119637247 -77558185 + AT_rich Low_complexity Low_complexity 1 21 0 1 1497 2405 110 6 0 chr1 119637329 119637683 -77557749 - L1_Mus2 LINE L1 0 6566 6211 1 1497 1580 102 8 0 chr1 119637684 119637930 -77557502 - L1_Mm LINE L1 -3298 2585 2338 1 1497 5004 59 2 0 chr1 119638771 119639398 -77556034 + L1Md_F2 LINE L1 5953 6580 -2 1 1497 7338 150 16 6 chr1 119639585 119641004 -77554428 - Lx3B LINE L1 -45 6928 5497 1 1497 2348 200 30 3 chr1 119641000 119641591 -77553841 - Lx3B LINE L1 -1003 4874 4268 1 1497 181 250 0 40 chr1 119641662 119641712 -77553720 - MIR SINE MIR -103 159 112 1 1497 2392 94 9 20 chr1 119641872 119642218 -77553214 - L1Md_F2 LINE L1 -11 6571 6230 1 1497 1682 160 39 20 chr1 119642225 119642531 -77552901 - ORR1B1-int LTR MaLR -285 1224 913 1 1497 757 112 46 39 chr1 119642602 119642663 -77552769 - RLTR25B LTR ERVK 0 1028 964 1 1497 195 42 0 0 chr1 119642663 119642687 -77552745 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1497 2481 130 102 25 chr1 119642687 119642924 -77552508 - RLTR25B LTR ERVK -65 963 609 1 1497 880 102 14 0 chr1 119642924 119643071 -77552361 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 1 1497 2481 138 125 20 chr1 119643071 119643369 -77552063 - RLTR25B LTR ERVK -420 608 282 1 1497 2355 87 182 0 chr1 119643750 119644152 -77551280 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1497 5698 45 4 19 chr1 119644154 119644909 -77550523 - IAPEz-int LTR ERVK -2 6479 5736 1 1497 2192 47 0 0 chr1 119644908 119645186 -77550246 - IAPEz-int LTR ERVK -4845 1636 1359 1 1497 3587 57 12 18 chr1 119645186 119645684 -77549748 - IAPEz-int LTR ERVK -5819 662 168 1 1497 231 345 0 0 chr1 119645684 119645739 -77549693 - RLTR27 LTR ERVK -34 275 221 1 1497 230 321 0 0 chr1 119645765 119645818 -77549614 - RLTR27 LTR ERVK -34 275 223 1 1497 897 132 25 81 chr1 119645818 119646016 -77549416 - IAPEz-int LTR ERVK -6286 195 9 1 1497 2328 99 182 0 chr1 119646017 119646419 -77549013 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1497 312 304 30 27 chr1 119646563 119646868 -77548564 - MMSAT4 Satellite Satellite 0 305 1 1 1497 267 329 7 7 chr1 119646898 119647036 -77548396 - MMSAT4 Satellite Satellite 0 168 31 1 1497 1101 103 0 0 chr1 119647560 119647706 -77547726 - B1_Mus1 SINE Alu -2 146 1 1 1497 249 244 44 44 chr1 119647841 119647931 -77547501 - MurSatRep1 Unknown Unknown -1409 728 639 1 1497 608 238 0 0 chr1 119648143 119648286 -77547146 - L1_Mur2 LINE L1 -1760 4117 3975 1 1497 3059 171 45 55 chr1 119648850 119649367 -77546065 - Lx LINE L1 0 6654 6132 1 1497 4157 74 27 5 chr1 119649367 119649927 -77545505 + L1Md_F2 LINE L1 5998 6569 -13 1 1497 3059 171 45 55 chr1 119649927 119650115 -77545317 - Lx LINE L1 -523 6131 5956 1 1497 305 97 32 0 chr1 119650126 119650188 -77545244 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 1 1497 1055 128 0 0 chr1 119650188 119650336 -77545096 - B1_Mus1 SINE Alu 0 148 1 1 1497 7329 173 58 12 chr1 119650336 119652077 -77543355 - Lx LINE L1 -683 5971 4152 1 1497 8142 75 0 9 chr1 119652075 119653224 -77542208 - L1_Mm LINE L1 -423 5460 4322 1 1497 201 147 0 0 chr1 119653237 119653271 -77542161 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 1 1497 26593 123 29 3 chr1 119653277 119656742 -77538690 - L1_Mus1 LINE L1 0 6567 3018 1 1497 387 0 0 0 chr1 119656742 119656785 -77538647 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1497 26593 138 33 4 chr1 119656785 119659331 -77536101 - L1_Mus1 LINE L1 -2866 3017 387 1 1497 1042 122 5 25 chr1 119659324 119659526 -77535906 - L1_Mm LINE L1 -1494 4389 4192 1 1497 5287 138 21 14 chr1 119659500 119660087 -77535345 - MusHAL1 LINE L1 -1078 1634 1037 1 1497 2646 69 88 0 chr1 119660087 119660451 -77534981 + MTA_Mm LTR MaLR 1 396 0 1 1497 5287 138 21 14 chr1 119660451 119660868 -77534564 - MusHAL1 LINE L1 -1676 1036 623 1 1497 647 124 8 24 chr1 119660858 119660982 -77534450 - L1VL2 LINE L1 -5506 829 708 1 1497 720 97 24 16 chr1 119660991 119661117 -77534315 - L1VL2 LINE L1 -5506 829 703 1 1497 3566 131 18 38 chr1 119661124 119661736 -77533696 - L1VL2 LINE L1 -5505 830 231 1 1497 2233 210 16 102 chr1 119661841 119662602 -77532830 - L1_Mur3 LINE L1 -1970 3910 3228 1 1497 1468 153 8 4 chr1 119662602 119662864 -77532568 - L1_Mus2 LINE L1 0 6566 6304 1 1497 2233 210 16 102 chr1 119662864 119663026 -77532406 - L1_Mur3 LINE L1 -2653 3227 3066 1 1497 1351 179 51 0 chr1 119663024 119663281 -77532151 - L1VL4 LINE L1 -5826 476 207 1 1497 550 246 30 30 chr1 119664016 119664664 -77530768 + MMSAT4 Satellite Satellite 1 647 0 1 1497 292 277 36 33 chr1 119664949 119665170 -77530262 + MMSAT4 Satellite Satellite 1 221 -5 1 1497 277 386 34 41 chr1 119665687 119665833 -77529599 + RSINE1 SINE B4 21 165 0 1 1497 5606 180 8 8 chr1 119665870 119666939 -77528493 + Lx2 LINE L1 5926 6995 -2 1 1497 458 200 105 73 chr1 119667018 119667142 -77528290 + MT2B LTR ERVL 130 257 -344 1 1497 901 98 0 0 chr1 119667053 119667175 -77528257 + B1_Mm SINE Alu 14 135 -12 1 1497 474 341 48 29 chr1 119667199 119667407 -77528025 + ID_B1 SINE B4 13 224 0 1 1497 2321 121 8 3 chr1 119667478 119667835 -77527597 + L1_Mus3 LINE L1 6280 6638 0 1 1497 247 327 26 70 chr1 119668274 119668389 -77527043 + MTE2b LTR MaLR 241 350 -29 1 187 355 336 47 8 chr1 119668613 119668742 -77526690 + RSINE1 SINE B4 32 165 0 1 1498 185 65 0 31 chr1 119668764 119668796 -77526636 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 1 1498 218 247 25 0 chr1 119668992 119669073 -77526359 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 1 1498 333 0 0 0 chr1 119669081 119669118 -77526314 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1498 427 333 103 25 chr1 119669128 119669331 -77526101 + B4 SINE B4 2 220 -72 1 1498 3584 123 1 19 chr1 119669766 119670841 -77524591 - L1Md_A LINE L1 -4182 1701 651 1 1498 20824 55 1 2 chr1 119670843 119673636 -77521796 + L1Md_F3 LINE L1 2798 5586 -297 1 1498 7545 66 6 0 chr1 119673637 119674613 -77520819 + L1Md_F3 LINE L1 5588 6569 -15 1 1498 6145 116 11 19 chr1 119674613 119675898 -77519534 + L1_Mus2 LINE L1 5294 6566 0 1 1498 1039 109 0 0 chr1 119675909 119676046 -77519386 + B1_Mus2 SINE Alu 2 138 -9 1 1498 196 30 61 0 chr1 119676046 119676079 -77519353 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1498 784 204 0 6 chr1 119676116 119676289 -77519143 - Lx4B LINE L1 -453 6605 6434 1 1498 225 355 8 86 chr1 119676558 119676675 -77518757 - PB1D9 SINE Alu -37 110 3 1 1498 647 258 17 60 chr1 119678459 119678694 -77516738 - URR1B DNA MER1_type 0 225 1 1 1498 225 0 0 0 chr1 119678858 119678883 -77516549 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1498 1253 115 0 0 chr1 119678972 119679154 -77516278 - L1_Mus2 LINE L1 0 6566 6385 1 1498 261 114 23 0 chr1 119679154 119679198 -77516234 - L1_Mus2 LINE L1 -313 6253 6209 1 1498 1755 89 0 0 chr1 119679186 119679444 -77515988 - L1_Mm LINE L1 -3287 2596 2339 1 1498 335 281 15 15 chr1 119679450 119679587 -77515845 + MurSatRep1 Unknown Unknown 606 742 -1395 1 1498 987 99 35 0 chr1 119679949 119680091 -77515341 + B1_Mus1 SINE Alu 2 148 0 1 1498 1266 192 85 7 chr1 119680601 119680884 -77514548 - Lx3B LINE L1 -4 6969 6665 1 1498 3540 98 4 29 chr1 119680886 119681410 -77514022 + L1_Mus1 LINE L1 6057 6567 0 1 1498 22 0 0 0 chr1 119681737 119681759 -77513673 + AT_rich Low_complexity Low_complexity 1 22 0 1 1498 6077 154 5 3 chr1 119681759 119682936 -77512496 - Lx3B LINE L1 -296 6677 5499 1 1498 2908 197 33 11 chr1 119682934 119683682 -77511750 - Lx3B LINE L1 -1003 4874 4110 1 1498 8407 65 0 1 chr1 119683679 119684811 -77510621 + L1Md_F3 LINE L1 4455 5585 -298 1 1498 7798 53 4 2 chr1 119684812 119685795 -77509637 + L1Md_F3 LINE L1 5587 6571 -13 1 1498 29 0 0 0 chr1 119685795 119685824 -77509608 + AT_rich Low_complexity Low_complexity 1 29 0 1 1498 2177 124 40 22 chr1 119685824 119686229 -77509203 - MusHAL1 LINE L1 -1464 1248 837 2 1498 2524 261 21 47 chr1 119686214 119687776 -77507656 - Lx3B LINE L1 -451 3463 1982 1 1498 1613 109 0 23 chr1 119687789 119688051 -77507381 - L1Md_F2 LINE L1 -12 6570 6315 2 1498 29754 93 23 10 chr1 119688056 119693783 -77501649 - L1Md_F2 LINE L1 -443 6139 360 2 1498 296 285 16 0 chr1 119693788 119693911 -77501521 - Lx3B LINE L1 -3970 1916 1792 1 1498 2845 72 0 0 chr1 119693911 119694341 -77501091 - L1Md_T LINE L1 0 6582 6210 2 1498 995 236 34 6 chr1 119694341 119694665 -77500767 - Lx3B LINE L1 -4094 1792 1460 1 1498 418 239 9 0 chr1 119694661 119694770 -77500662 - Lx3C LINE L1 -704 6272 6163 2 1498 320 191 0 0 chr1 119694772 119694835 -77500597 - L1_Mur2 LINE L1 -465 5412 5350 2 1498 270 179 0 0 chr1 119694850 119694906 -77500526 + CT-rich Low_complexity Low_complexity 2 57 0 2 1498 1705 215 48 14 chr1 119694921 119695337 -77500095 - Lx3C LINE L1 -4 6972 6543 2 1498 3946 146 44 18 chr1 119695335 119696174 -77499258 - MusHAL1 LINE L1 -1752 960 100 2 1498 931 158 7 0 chr1 119696185 119696331 -77499101 - B1_Mus2 SINE Alu 0 147 1 2 1498 2454 177 25 14 chr1 119696335 119696823 -77498609 - L1VL4 LINE L1 -5603 699 207 2 1498 634 227 25 25 chr1 119697562 119698847 -77496585 + MMSAT4 Satellite Satellite 1 1285 0 2 1498 254 323 0 43 chr1 119699133 119699272 -77496160 + MMSAT4 Satellite Satellite 31 163 -5 2 1498 24 0 0 0 chr1 119699724 119699748 -77495684 + AT_rich Low_complexity Low_complexity 1 24 0 2 1498 1646 167 4 0 chr1 119699979 119700239 -77495193 - MTB_Mm LTR MaLR -2 405 145 2 1498 1039 293 56 0 chr1 119700239 119700509 -77494923 - RMER13B LTR ERVK 0 908 624 2 1498 2593 180 34 0 chr1 119700511 119700955 -77494477 - RMER13B LTR ERVK -447 461 3 2 1498 659 156 85 149 chr1 119700955 119701115 -77494317 - MTB_Mm LTR MaLR -257 150 3 2 1498 4480 116 36 6 chr1 119701152 119701839 -77493593 - L1Md_F2 LINE L1 -13 6569 5862 2 1498 6999 78 10 1 chr1 119701839 119702947 -77492485 - L1Md_F3 LINE L1 -5 6579 5461 2 1498 1672 188 78 13 chr1 119702970 119703343 -77492089 - MT-int LTR MaLR -139 959 563 2 1498 4468 166 6 9 chr1 119703343 119704277 -77491155 + L1_Mm LINE L1 2549 3480 -2403 2 1498 5706 129 5 18 chr1 119704289 119706132 -77489300 + L1_Mus2 LINE L1 173 1995 -3888 2 1498 2370 154 60 26 chr1 119706132 119706598 -77488834 + RLTR45 LTR ERVK 1 482 0 2 1498 5301 97 1 13 chr1 119706598 119706666 -77488766 + L1_Mus2 LINE L1 1996 2059 -3824 2 1498 12977 131 5 1 chr1 119706712 119707735 -77487697 + L1_Mus2 LINE L1 3700 4731 -1152 2 1498 396 0 0 0 chr1 119707735 119707779 -77487653 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1498 12977 118 4 1 chr1 119707779 119709611 -77485821 + L1_Mus2 LINE L1 4732 6566 0 2 1498 22 0 0 0 chr1 119709613 119709635 -77485797 + AT_rich Low_complexity Low_complexity 1 22 0 2 1498 1809 122 0 0 chr1 119709659 119709945 -77485487 - L1_Mm LINE L1 -1609 4274 3989 2 1498 3163 148 24 31 chr1 119709941 119710302 -77485130 + L1_Mus1 LINE L1 728 1098 -5536 2 1498 1116 144 11 11 chr1 119710302 119710492 -77484940 + B2_Mm1t SINE B2 1 190 -3 2 1498 11721 160 19 135 chr1 119710492 119712659 -77482773 + L1_Mus1 LINE L1 1099 2811 -3072 2 1498 5112 118 51 51 chr1 119712659 119713561 -77481871 + RLTR13D6 LTR ERVK 1 902 0 2 1498 11721 162 19 149 chr1 119713561 119715003 -77480429 + L1_Mus1 LINE L1 2812 4236 -1647 2 1498 234 89 0 0 chr1 119714993 119715038 -77480394 + L1_Mus2 LINE L1 6522 6566 0 2 1498 6669 94 6 9 chr1 119715046 119716330 -77479102 + L1_Mus1 LINE L1 5291 6567 0 2 1498 3003 29 6 0 chr1 119716608 119716952 -77478480 + ORR1A0 LTR MaLR 1 346 0 2 1498 13531 64 6 2 chr1 119716954 119718736 -77476696 + ORR1A0-int LTR MaLR 3 1791 -1 2 1498 2955 32 3 0 chr1 119718737 119719082 -77476350 + ORR1A0 LTR MaLR 1 346 0 2 1498 28368 83 5 3 chr1 119720014 119725455 -77469977 + L1Md_F2 LINE L1 141 5586 -297 2 1498 7946 50 5 0 chr1 119725456 119726445 -77468987 + L1Md_F2 LINE L1 5588 6581 -1 2 1498 828 245 17 61 chr1 119727403 119727633 -77467799 - URR1B DNA MER1_type 0 225 6 2 1498 294 29 0 0 chr1 119727796 119727831 -77467601 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1498 1111 144 6 0 chr1 119727919 119728099 -77467333 - L1_Mus2 LINE L1 -1 6565 6385 2 1498 1587 133 5 8 chr1 119728131 119728411 -77467021 - L1_Mm LINE L1 -3238 2609 2344 2 1498 266 259 36 36 chr1 119728396 119728536 -77466896 + MurSatRep1 Unknown Unknown 606 745 -1392 2 1498 321 293 22 82 chr1 119728862 119728897 -77466535 + MT2B2 LTR ERVL 133 205 -379 2 1498 526 92 13 0 chr1 119728897 119728973 -77466459 + B1_Mus1 SINE Alu 2 78 -70 2 1498 321 293 22 82 chr1 119728973 119728996 -77466436 + MT2B2 LTR ERVL 206 258 -326 2 1498 21 0 0 0 chr1 119729405 119729426 -77466006 + AT_rich Low_complexity Low_complexity 1 21 0 2 1498 1553 166 44 30 chr1 119729511 119729809 -77465623 - Lx3B LINE L1 -10 6963 6662 2 1498 3732 90 6 0 chr1 119729808 119730317 -77465115 + L1_Mus1 LINE L1 6056 6567 0 2 1498 22 0 0 0 chr1 119730643 119730665 -77464767 + AT_rich Low_complexity Low_complexity 1 22 0 2 1498 6144 147 4 4 chr1 119730665 119731843 -77463589 - Lx3B LINE L1 -296 6677 5499 2 1498 3427 211 25 15 chr1 119731841 119732732 -77462700 - L1_Mur2 LINE L1 -1003 4874 3975 2 1498 5602 183 220 14 chr1 119732951 119733058 -77462374 - L1_Mur1 LINE L1 -184 5693 5588 2 1498 3223 156 34 102 chr1 119733058 119733864 -77461568 - RMER17A LTR ERVK 0 751 1 2 1498 5602 183 220 14 chr1 119733864 119734026 -77461406 - L1_Mur1 LINE L1 -290 5587 5436 2 1498 254 50 0 24 chr1 119734026 119734067 -77461365 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1498 5602 183 220 14 chr1 119734067 119735416 -77460016 - L1_Mur1 LINE L1 -442 5435 3740 2 1498 7149 70 7 1 chr1 119735413 119736535 -77458897 - L1Md_F2 LINE L1 -12 6570 5441 2 1498 315 77 0 0 chr1 119736530 119736582 -77458850 - L1Md_F2 LINE L1 -823 5060 5009 2 1498 1462 90 0 0 chr1 119736580 119736792 -77458640 - L1Md_F2 LINE L1 -1188 4695 4484 2 1498 2673 86 3 0 chr1 119736793 119737177 -77458255 + L1_Mm LINE L1 2390 2774 -3109 2 1498 6252 142 31 10 chr1 119737154 119738502 -77456930 - L1_Mur1 LINE L1 -2103 3783 2412 2 1498 2075 133 3 10 chr1 119738502 119738813 -77456619 - RLTR27 LTR ERVK 0 309 1 2 1498 1224 147 90 25 chr1 119738813 119739058 -77456374 - MMERVK10C-int LTR ERVK 0 7581 7321 2 1498 1455 291 21 19 chr1 119739861 119740504 -77454928 - MMERVK10C-int LTR ERVK -4270 3311 2683 2 1498 399 168 48 29 chr1 119740816 119740920 -77454512 - RLTR10-int LTR ERVK -1134 853 748 2 1498 281 68 45 0 chr1 119741072 119741116 -77454316 - RLTR10-int LTR ERVK -7314 267 222 2 1498 1619 132 161 4 chr1 119741148 119741415 -77454017 - RLTR27 LTR ERVK 0 309 1 2 1498 3027 142 27 14 chr1 119741415 119742000 -77453432 - MusHAL1 LINE L1 -1497 1215 623 2 1498 3339 140 49 12 chr1 119741997 119742570 -77452862 - L1VL2 LINE L1 -5511 824 231 2 1498 794 190 38 12 chr1 119742655 119742895 -77452537 - Lx3C LINE L1 -1949 3928 3683 2 1498 5594 244 53 36 chr1 119743542 119744370 -77451062 - Lx3C LINE L1 -2198 3679 2879 2 1498 1206 58 0 0 chr1 119744370 119744525 -77450907 + (TTTC)n Simple_repeat Simple_repeat 1 155 0 2 1498 5594 246 52 34 chr1 119744525 119745979 -77449453 - Lx3C LINE L1 -2999 2878 1435 2 1498 335 172 0 0 chr1 119745980 119746044 -77449388 - L1_Mur1 LINE L1 -464 5422 5359 2 1498 249 196 0 0 chr1 119746059 119746115 -77449317 + CT-rich Low_complexity Low_complexity 2 57 0 2 1498 1619 222 43 17 chr1 119746134 119746550 -77448882 - Lx3C LINE L1 -9 6967 6541 2 1498 4622 129 9 8 chr1 119746546 119747406 -77448026 - MusHAL1 LINE L1 -1752 960 100 2 1498 318 26 0 0 chr1 119747420 119747459 -77447973 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1498 973 146 0 0 chr1 119747459 119747603 -77447829 - B1_Mus2 SINE Alu -3 144 1 2 1498 2457 166 50 14 chr1 119747605 119748088 -77447344 - L1VL4 LINE L1 -5596 706 207 2 1498 180 0 0 0 chr1 119748318 119748338 -77447094 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1498 2090 133 37 28 chr1 119748338 119748693 -77446739 - RLTR45 LTR ERVK -124 358 1 2 1498 6691 61 0 1 chr1 119748693 119749549 -77445883 - RLTR45-int LTR ERVK 0 7244 6390 2 1498 592 234 30 28 chr1 119750061 119750942 -77444490 + MMSAT4 Satellite Satellite 1 881 0 2 1498 2875 88 4 0 chr1 119751007 119751482 -77443950 - L1Md_F2 LINE L1 -640 5942 5461 2 1498 2280 174 70 23 chr1 119751484 119751996 -77443436 - MT-int LTR MaLR 0 1098 563 2 1498 4780 167 1 1 chr1 119751996 119752929 -77442503 + L1_Mm LINE L1 2549 3481 -2402 2 1498 4572 138 12 15 chr1 119752944 119754287 -77441145 + L1Md_F LINE L1 380 1717 -4166 2 1498 29535 83 23 8 chr1 119754288 119759245 -77436187 + L1Md_T LINE L1 561 5586 -297 2 1498 8281 40 1 0 chr1 119759245 119760240 -77435192 + L1Md_T LINE L1 5587 6582 0 2 1498 768 29 19 0 chr1 119760242 119760347 -77435085 + L1_Mm LINE L1 5243 5349 -534 2 1498 1738 132 14 0 chr1 119760344 119760639 -77434793 + L1_Mus1 LINE L1 3932 4230 -1653 2 1498 251 91 0 0 chr1 119760635 119760679 -77434753 + L1_Mus2 LINE L1 6522 6565 -1 2 1498 6578 112 2 1 chr1 119760677 119761964 -77433468 + L1_Mus1 LINE L1 5279 6567 0 2 1498 812 245 17 61 chr1 119764117 119764347 -77431085 - URR1B DNA MER1_type 0 225 6 2 1498 309 51 0 0 chr1 119764486 119764525 -77430907 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1498 1213 133 0 0 chr1 119764613 119764794 -77430638 - L1_Mus2 LINE L1 -1 6565 6385 2 1498 251 71 71 0 chr1 119764794 119764836 -77430596 - L1_Mus2 LINE L1 -313 6253 6209 2 1498 1618 121 4 6 chr1 119764824 119765104 -77430328 - L1_Mm LINE L1 -3238 2609 2344 2 1498 276 304 14 14 chr1 119765089 119765229 -77430203 + MurSatRep1 Unknown Unknown 606 745 -1392 2 1498 892 121 28 14 chr1 119765590 119765733 -77429699 + B1_Mus1 SINE Alu 2 146 -2 2 1498 1535 173 44 30 chr1 119766235 119766533 -77428899 - Lx3B LINE L1 -10 6963 6662 2 1498 3697 92 2 0 chr1 119766532 119767032 -77428400 + L1_Mus1 LINE L1 6056 6556 -11 2 1498 5987 145 9 4 chr1 119767386 119768557 -77426875 - Lx3B LINE L1 -296 6677 5499 2 1498 3746 198 28 7 chr1 119768555 119769440 -77425992 - L1_Mur2 LINE L1 -1003 4874 3971 2 1498 729 102 0 0 chr1 119769660 119769768 -77425664 - L1Md_A LINE L1 -937 5699 5592 2 1498 3664 155 10 77 chr1 119769784 119770562 -77424870 - RMER17A LTR ERVK -25 726 1 2 1498 5690 182 224 12 chr1 119770564 119770715 -77424717 - L1Md_A LINE L1 -287 5596 5444 2 1498 279 0 0 0 chr1 119770715 119770746 -77424686 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1498 5742 177 44 14 chr1 119770746 119772157 -77423275 - L1Md_A LINE L1 -440 5443 3696 2 1498 38041 22 3 6 chr1 119772128 119778528 -77416904 - L1Md_A LINE L1 0 6582 208 2 1498 447 252 8 8 chr1 119778528 119778648 -77416784 - L1M4 LINE L1 -2369 3777 3658 2 1498 7998 136 36 8 chr1 119778649 119780173 -77415259 - MusHAL1 LINE L1 -282 2430 865 2 1498 1744 234 14 6 chr1 119780203 119780689 -77414743 + L1Md_A LINE L1 446 935 -5789 2 1498 21113 105 108 29 chr1 119780689 119782127 -77413305 + L1Md_F3 LINE L1 446 1827 -4056 2 1498 1513 43 21 0 chr1 119782127 119782314 -77413118 + B2_Mm1t SINE B2 1 191 -2 2 1498 21113 60 241 4 chr1 119782314 119785233 -77410199 + L1Md_F3 LINE L1 1828 5585 -298 2 1498 7695 55 13 2 chr1 119785234 119786207 -77409225 + L1Md_F3 LINE L1 5587 6570 -14 2 1498 8235 85 4 17 chr1 119786219 119787829 -77407603 + L1Md_Gf LINE L1 789 2474 -3412 2 1498 4283 91 31 11 chr1 119787829 119788443 -77406989 + L1Md_F2 LINE L1 5957 6582 0 2 1498 1427 95 21 13 chr1 119788450 119788684 -77406748 - MusHAL1 LINE L1 -1851 861 626 2 1498 3473 136 16 44 chr1 119788677 119789293 -77406139 - L1VL2 LINE L1 -5506 829 231 2 1498 6222 231 44 64 chr1 119789378 119791896 -77403536 - L1_Mur2 LINE L1 -1949 3928 1461 2 1498 334 274 11 0 chr1 119791893 119791988 -77403444 - Lx3C LINE L1 -704 6272 6177 2 1498 384 141 0 0 chr1 119792003 119792067 -77403365 - L1_Mur1 LINE L1 -464 5422 5359 2 1498 210 220 0 0 chr1 119792084 119792143 -77403289 + CT-rich Low_complexity Low_complexity 2 60 0 2 1498 1681 226 48 12 chr1 119792155 119792572 -77402860 - Lx3C LINE L1 -4 6972 6541 2 1498 4631 122 22 12 chr1 119792568 119793420 -77402012 - MusHAL1 LINE L1 -1752 960 100 2 1498 979 137 7 0 chr1 119793425 119793571 -77401861 - B1_Mus2 SINE Alu 0 147 1 2 1498 2557 179 18 12 chr1 119793573 119794065 -77401367 - L1VL4 LINE L1 -5596 706 212 3 1498 622 241 27 28 chr1 119794794 119795938 -77399494 + MMSAT4 Satellite Satellite 1 1142 0 3 1498 28 86 0 0 chr1 119796337 119796407 -77399025 + AT_rich Low_complexity Low_complexity 1 70 0 3 1498 24 0 0 0 chr1 119796643 119796667 -77398765 + AT_rich Low_complexity Low_complexity 1 24 0 3 1498 2465 136 30 30 chr1 119796895 119797157 -77398275 - MTB_Mm LTR MaLR 0 407 147 3 1498 4249 215 39 18 chr1 119797157 119798046 -77397386 - RMER13B LTR ERVK 0 908 1 3 1498 2465 136 30 30 chr1 119798046 119798186 -77397246 - MTB_Mm LTR MaLR -261 146 5 3 1498 2571 181 65 22 chr1 119798189 119798796 -77396636 - MTB_Mm-int LTR MaLR 0 1258 535 3 1498 3687 86 28 4 chr1 119798811 119799345 -77396087 + RLTR13D5 LTR ERVK 333 879 -144 3 187 18222 130 162 15 chr1 119799345 119804457 -77390975 + L1_Mus1 LINE L1 384 6297 -270 3 1499 1795 250 14 8 chr1 119804458 119804978 -77390454 + L1Md_F2 LINE L1 446 952 -5772 3 1499 1555 84 0 4 chr1 119804976 119805227 -77390205 + L1Md_F2 LINE L1 1462 1711 -4172 3 1499 19196 85 7 11 chr1 119805225 119808097 -77387335 + L1Md_F2 LINE L1 2726 5585 -298 3 1499 7226 79 5 3 chr1 119808098 119809080 -77386352 + L1Md_F2 LINE L1 5587 6570 -12 3 1499 24 32 0 0 chr1 119809094 119809125 -77386307 + AT_rich Low_complexity Low_complexity 1 31 0 3 1499 9645 64 4 1 chr1 119809125 119810436 -77384996 + L1Md_F2 LINE L1 4272 5586 -297 3 1499 7794 60 4 6 chr1 119810436 119811434 -77383998 + L1Md_F2 LINE L1 5587 6582 0 3 1499 912 70 0 83 chr1 119811569 119811637 -77383795 + L1Md_F2 LINE L1 6439 6504 -78 3 1499 2652 120 15 127 chr1 119811637 119812180 -77383252 - RLTR45 LTR ERVK 0 482 1 3 1499 912 70 0 83 chr1 119812180 119812268 -77383164 + L1Md_F2 LINE L1 6505 6582 0 3 1499 739 124 467 4 chr1 119812270 119812512 -77382920 + L1_Mm LINE L1 1704 2057 -3826 3 1499 3046 71 2 0 chr1 119812550 119812989 -77382443 + L1_Mm LINE L1 3696 4135 -1748 3 1499 9529 147 12 12 chr1 119812980 119814816 -77380616 + MusHAL1 LINE L1 224 2060 -652 3 1499 3950 95 69 4 chr1 119814817 119815420 -77380012 + RLTR13D6 LTR ERVK 1 801 -313 3 1499 36269 36 8 7 chr1 119815420 119821535 -77373897 - L1Md_T LINE L1 -2 6580 468 3 1499 1392 192 24 19 chr1 119821535 119821843 -77373589 + RLTR13D6 LTR ERVK 624 1023 0 3 1499 7746 138 25 1 chr1 119821874 119823278 -77372154 + L1_Mus1 LINE L1 2793 4230 -1653 3 1499 255 89 0 0 chr1 119823274 119823319 -77372113 + L1_Mus2 LINE L1 6522 6566 0 3 1499 5006 113 11 1 chr1 119823326 119824390 -77371042 + L1_Mus1 LINE L1 5289 6362 -205 3 1499 671 262 17 60 chr1 119825353 119825588 -77369844 - URR1B DNA MER1_type 0 225 1 3 1499 1131 156 0 0 chr1 119825825 119826005 -77369427 - L1_Mus2 LINE L1 -2 6564 6385 3 1499 259 91 23 0 chr1 119826005 119826049 -77369383 - L1_Mus2 LINE L1 -313 6253 6209 3 1499 1636 116 4 6 chr1 119826037 119826317 -77369115 - L1_Mm LINE L1 -3238 2609 2344 3 1499 300 298 31 12 chr1 119826302 119826462 -77368970 + MurSatRep1 Unknown Unknown 606 768 -1369 3 1499 755 122 122 0 chr1 119826782 119826913 -77368519 + B1_Mus1 SINE Alu 2 148 0 3 1499 1414 162 62 31 chr1 119827415 119827707 -77367725 - Lx3B LINE L1 -10 6963 6663 3 1499 3429 109 26 0 chr1 119827707 119828204 -77367228 + L1_Mus1 LINE L1 6056 6565 -2 3 1499 4653 170 14 9 chr1 119828572 119829462 -77365970 - Lx3B LINE L1 -293 6680 5787 3 1499 10320 198 29 7 chr1 119829482 119831955 -77363477 - L1_Mur1 LINE L1 -1531 4355 1828 3 1499 3495 126 29 29 chr1 119831950 119832547 -77362885 - L1VL2 LINE L1 -5508 827 231 3 1499 6103 242 54 42 chr1 119832632 119833944 -77361488 - Lx3C LINE L1 -1949 3928 2646 3 1499 216 0 0 0 chr1 119833944 119833968 -77361464 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1499 6103 242 50 39 chr1 119833968 119835182 -77360250 - Lx3C LINE L1 -3232 2645 1433 3 1499 234 137 0 107 chr1 119835197 119835279 -77360153 - L1_Mur2 LINE L1 -464 5422 5347 3 1499 183 220 0 0 chr1 119835293 119835343 -77360089 + CT-rich Low_complexity Low_complexity 2 51 0 3 1499 1914 199 45 12 chr1 119835355 119835773 -77359659 - Lx3C LINE L1 -4 6972 6541 3 1499 4479 133 7 22 chr1 119835769 119836637 -77358795 - MusHAL1 LINE L1 -1752 960 106 3 1499 454 30 0 43 chr1 119836637 119836707 -77358725 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 3 1499 820 148 8 0 chr1 119836708 119836836 -77358596 - B1_Mus1 SINE Alu -9 139 11 3 1499 682 159 16 16 chr1 119836844 119836972 -77358460 - L1VL4 LINE L1 -5596 706 579 3 1499 30782 97 16 10 chr1 119836961 119843278 -77352154 - L1Md_F2 LINE L1 -4 6578 273 3 1499 1607 203 17 98 chr1 119843279 119843699 -77351733 - L1VL4 LINE L1 -5710 592 207 3 1499 573 234 22 22 chr1 119844416 119845395 -77350037 + MMSAT4 Satellite Satellite 1 979 0 3 1499 22 103 0 0 chr1 119846038 119846116 -77349316 + AT_rich Low_complexity Low_complexity 1 78 0 3 1499 2431 140 30 30 chr1 119846604 119846866 -77348566 - MTB_Mm LTR MaLR 0 407 145 3 1499 4037 230 40 8 chr1 119846866 119847746 -77347686 - RMER13B LTR ERVK 0 908 1 3 1499 2431 140 30 30 chr1 119847746 119847888 -77347544 - MTB_Mm LTR MaLR -263 144 3 3 1499 5981 104 35 7 chr1 119847924 119849004 -77346428 - L1Md_F2 LINE L1 -12 6570 5461 3 1499 2264 192 60 23 chr1 119849006 119849523 -77345909 - MT-int LTR MaLR 0 1098 563 3 1499 5208 134 4 2 chr1 119849523 119850452 -77344980 + MusHAL1 LINE L1 1345 2275 -437 3 1499 13842 111 299 6 chr1 119850456 119854677 -77340755 + L1Md_T LINE L1 163 5586 -297 3 1499 8383 32 3 0 chr1 119854677 119855668 -77339764 + L1Md_T LINE L1 5587 6580 -2 3 1499 29770 100 4 8 chr1 119855672 119861042 -77334390 + L1_Mus1 LINE L1 1217 6567 0 3 1499 661 258 17 60 chr1 119863209 119863444 -77331988 - URR1B DNA MER1_type 0 225 1 3 1499 1167 137 0 0 chr1 119863714 119863896 -77331536 - L1_Mus2 LINE L1 0 6566 6385 3 1499 296 68 23 0 chr1 119863896 119863940 -77331492 - L1_Mus2 LINE L1 -313 6253 6209 3 1499 1659 112 3 5 chr1 119863928 119864208 -77331224 - L1_Rod LINE L1 -3238 2609 2342 3 1499 313 297 14 14 chr1 119864193 119864333 -77331099 + MurSatRep1 Unknown Unknown 606 745 -1392 3 1499 1015 111 7 0 chr1 119864691 119864835 -77330597 + B1_Mus1 SINE Alu 2 146 -2 3 1499 1261 198 46 33 chr1 119865344 119865647 -77329785 - Lx3B LINE L1 -4 6969 6663 3 1499 3503 84 23 29 chr1 119865649 119866163 -77329269 + L1_Mus1 LINE L1 6057 6567 0 3 1499 27 0 0 0 chr1 119866492 119866519 -77328913 + AT_rich Low_complexity Low_complexity 1 27 0 3 1499 6177 136 7 5 chr1 119866519 119867694 -77327738 - Lx3B LINE L1 -300 6673 5499 3 1499 3437 199 40 6 chr1 119867692 119868566 -77326866 - L1_Mur2 LINE L1 -1003 4874 3971 3 1499 21 82 0 0 chr1 119868625 119868674 -77326758 + AT_rich Low_complexity Low_complexity 1 49 0 3 1499 12833 189 116 24 chr1 119868795 119868906 -77326526 - L1_Mur1 LINE L1 -184 5702 5597 3 1499 3757 139 27 62 chr1 119868906 119869680 -77325752 - RMER17A LTR ERVK -4 747 1 3 1499 12833 189 116 24 chr1 119869680 119872898 -77322534 - L1_Mur1 LINE L1 -290 5596 2066 3 1499 4753 19 0 0 chr1 119872904 119873484 -77321948 - L1Md_T LINE L1 -358 5525 4946 3 1499 492 33 0 0 chr1 119873484 119873544 -77321888 + L1Md_T LINE L1 5527 5586 -297 3 1499 8368 32 7 0 chr1 119873544 119874533 -77320899 + L1Md_T LINE L1 5587 6582 0 3 1499 1644 228 68 9 chr1 119874553 119875098 -77320334 - L1_Mur2 LINE L1 -2419 3458 2882 3 1499 13708 92 1 8 chr1 119875087 119877147 -77318285 - L1_Mm LINE L1 -356 5527 3483 3 1499 7551 59 4 1 chr1 119877141 119878795 -77316637 - L1Md_F2 LINE L1 0 6582 4926 3 1499 3977 75 0 0 chr1 119878790 119879347 -77316085 - L1Md_F2 LINE L1 -1457 4426 3870 3 1499 1959 94 0 0 chr1 119879347 119879656 -77315776 + L1_Mm LINE L1 1894 2202 -3681 3 1499 483 104 13 0 chr1 119879649 119879726 -77315706 - L1Md_F2 LINE L1 -3618 2265 2188 3 1499 1200 144 5 0 chr1 119879724 119879946 -77315486 - L1Md_F2 LINE L1 -3869 2014 1792 3 1499 314 264 0 11 chr1 119879933 119880025 -77315407 - Lx3C LINE L1 -343 6633 6543 3 1499 4433 142 19 6 chr1 119880023 119880866 -77314566 - MusHAL1 LINE L1 -1752 960 107 3 1499 294 29 0 0 chr1 119880868 119880903 -77314529 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1499 930 166 0 0 chr1 119880903 119881048 -77314384 - B1_Mus2 SINE Alu -2 145 1 3 1499 2510 184 12 10 chr1 119881051 119881544 -77313888 - L1VL4 LINE L1 -5602 700 207 3 1499 624 226 26 26 chr1 119882252 119883658 -77311774 + MMSAT4 Satellite Satellite 1 1406 0 3 1499 249 302 18 32 chr1 119883854 119884080 -77311352 + MMSAT4 Satellite Satellite 1 222 -5 3 1499 1611 174 4 0 chr1 119884702 119884963 -77310469 - MTB_Mm LTR MaLR -1 406 145 3 1499 1107 288 52 0 chr1 119884963 119885234 -77310198 - RMER13B LTR ERVK 0 908 624 3 1499 2583 185 34 0 chr1 119885236 119885680 -77309752 - RMER13B LTR ERVK -447 461 3 3 1499 611 190 69 133 chr1 119885680 119885840 -77309592 - MTB_Mm LTR MaLR -257 150 3 3 1499 4556 112 33 6 chr1 119885877 119886566 -77308866 - L1Md_F2 LINE L1 -13 6569 5862 3 1499 603 81 0 0 chr1 119886560 119886659 -77308773 - L1Md_T LINE L1 -1 6581 6483 3 1499 3836 45 17 0 chr1 119886659 119887126 -77308306 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1499 964 106 31 87 chr1 119887127 119887323 -77308109 + IAPEz-int LTR ERVK 9 193 -6288 3 1499 248 309 0 0 chr1 119887323 119887378 -77308054 + RLTR27 LTR ERVK 221 275 -34 3 1499 3638 57 8 18 chr1 119887378 119887878 -77307554 + IAPEz-int LTR ERVK 168 662 -5819 3 1499 2556 67 0 3 chr1 119887878 119888221 -77307211 + IAPEz-int LTR ERVK 1359 1700 -4781 3 1499 6485 45 2 6 chr1 119888214 119889046 -77306386 + IAPEz-int LTR ERVK 5651 6479 -2 3 1499 3510 49 8 85 chr1 119889048 119889563 -77305869 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1499 6702 67 6 1 chr1 119889563 119890586 -77304846 - L1Md_F3 LINE L1 -96 6488 5461 3 1499 2351 178 60 23 chr1 119890588 119891105 -77304327 - MT-int LTR MaLR 0 1098 563 3 1499 4559 166 3 1 chr1 119891105 119892037 -77303395 + MusHAL1 LINE L1 1345 2278 -434 3 1499 5365 118 4 23 chr1 119892052 119893695 -77301737 + L1_Mus2 LINE L1 380 1994 -3889 3 1499 2330 154 60 26 chr1 119893695 119894161 -77301271 + RLTR45 LTR ERVK 1 482 0 3 1499 5365 91 3 12 chr1 119894161 119894229 -77301203 + L1_Mus2 LINE L1 1995 2059 -3824 3 1499 12319 129 5 14 chr1 119894259 119897165 -77298267 + L1_Mus2 LINE L1 3696 6566 0 3 1499 22 0 0 0 chr1 119897168 119897190 -77298242 + AT_rich Low_complexity Low_complexity 1 22 0 3 1499 459 0 0 0 chr1 119897239 119897290 -77298142 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1499 1737 129 0 0 chr1 119897290 119897570 -77297862 - L1_Mm LINE L1 -1615 4268 3989 3 1499 3052 151 31 31 chr1 119897566 119897918 -77297514 + L1_Mus1 LINE L1 728 1098 -5536 3 1499 1148 138 11 11 chr1 119897918 119898109 -77297323 + B2_Mm1t SINE B2 1 191 -2 3 1499 12304 158 14 138 chr1 119898109 119900318 -77295114 + L1_Mus1 LINE L1 1099 3113 -2770 3 1499 5242 116 50 49 chr1 119900318 119901219 -77294213 + RLTR13D6 LTR ERVK 1 902 0 3 1499 12304 159 12 152 chr1 119901219 119902654 -77292778 + L1_Mus1 LINE L1 3114 4230 -1653 3 1499 255 89 0 0 chr1 119902650 119902695 -77292737 + L1_Mus2 LINE L1 6522 6566 0 3 1499 6397 107 12 1 chr1 119902699 119903968 -77291464 + L1_Mus1 LINE L1 5286 6567 0 3 1499 720 244 17 60 chr1 119906120 119906355 -77289077 - URR1B DNA MER1_type 0 225 1 3 1499 1152 154 0 0 chr1 119906601 119906783 -77288649 - L1_Mus2 LINE L1 0 6566 6385 3 1499 267 91 23 0 chr1 119906783 119906827 -77288605 - L1_Mus2 LINE L1 -313 6253 6209 3 1499 1629 121 4 6 chr1 119906815 119907095 -77288337 - L1_Mm LINE L1 -3238 2609 2344 3 1499 280 279 29 29 chr1 119907080 119907220 -77288212 + MurSatRep1 Unknown Unknown 606 745 -1392 3 1499 4108 21 0 0 chr1 119907545 119908016 -77287416 - L1Md_A LINE L1 -2 6580 6110 3 1499 1011 110 7 0 chr1 119908053 119908199 -77287233 + B1_Mus1 SINE Alu 2 148 0 3 1499 1399 194 43 30 chr1 119908705 119909008 -77286424 - Lx3B LINE L1 -4 6969 6663 3 1499 1046 168 5 5 chr1 119909007 119909216 -77286216 + L1Md_F LINE L1 168 376 -6143 3 1499 330 325 65 80 chr1 119909217 119909542 -77285890 - RLTR46 LTR ERVK 0 320 1 3 1499 8434 199 22 9 chr1 119909542 119911383 -77284049 - IAPEY3-int LTR ERVK 0 7680 5817 3 1499 25074 175 34 23 chr1 119911390 119912860 -77282572 - IAPEY3-int LTR ERVK -2024 5656 4135 3 1499 188 200 62 124 chr1 119912860 119912957 -77282475 - L3 LINE CR1 -460 4029 3939 3 1499 25074 175 34 23 chr1 119912957 119916402 -77279030 - IAPEY3-int LTR ERVK -2024 4134 564 3 1499 7421 73 0 24 chr1 119916402 119917460 -77277972 + L1Md_F2 LINE L1 4553 5585 -298 3 1499 7754 59 5 0 chr1 119917462 119918442 -77276990 + L1Md_F2 LINE L1 5588 6572 -10 3 1499 180 0 0 0 chr1 119918452 119918472 -77276960 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1499 3326 103 4 0 chr1 119918486 119918973 -77276459 + L1_Mus1 LINE L1 6056 6544 -23 4 1499 27327 80 67 17 chr1 119918974 119923918 -77271514 + L1Md_F2 LINE L1 400 5586 -297 4 1499 7899 53 3 1 chr1 119923919 119924911 -77270521 + L1Md_F2 LINE L1 5588 6581 -1 4 1499 808 250 17 61 chr1 119925882 119926112 -77269320 - URR1B DNA MER1_type 0 225 6 4 1499 345 47 0 0 chr1 119926275 119926318 -77269114 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1499 1098 149 6 0 chr1 119926406 119926587 -77268845 - L1_Mus2 LINE L1 0 6566 6385 4 1499 1587 133 5 8 chr1 119926619 119926899 -77268533 - L1_Mm LINE L1 -3238 2609 2344 4 1499 266 259 36 36 chr1 119926884 119927024 -77268408 + MurSatRep1 Unknown Unknown 606 745 -1392 4 1499 308 314 15 82 chr1 119927350 119927385 -77268047 + MT2B2 LTR ERVL 133 204 -380 4 1499 521 105 13 0 chr1 119927385 119927461 -77267971 + B1_Mus1 SINE Alu 2 78 -70 4 1499 308 314 15 82 chr1 119927461 119927485 -77267947 + MT2B2 LTR ERVL 205 258 -326 4 1499 21 0 0 0 chr1 119927893 119927914 -77267518 + AT_rich Low_complexity Low_complexity 1 21 0 4 1499 1553 166 44 30 chr1 119927997 119928295 -77267137 - Lx3B LINE L1 -10 6963 6662 4 1499 3703 94 6 0 chr1 119928294 119928803 -77266629 + L1_Mus1 LINE L1 6056 6567 0 4 1499 22 0 0 0 chr1 119929129 119929151 -77266281 + AT_rich Low_complexity Low_complexity 1 22 0 4 1499 6171 144 4 4 chr1 119929151 119930329 -77265103 - Lx3B LINE L1 -296 6677 5499 4 187 3427 209 30 6 chr1 119930327 119931191 -77264241 - L1_Mur2 LINE L1 -1003 4874 3990 4 1500 1871 185 28 23 chr1 119931425 119931531 -77263901 - L1_Mm LINE L1 -184 5699 5594 4 1500 3294 150 42 75 chr1 119931531 119932307 -77263125 - RMER17A LTR ERVK 0 751 1 4 1500 1871 185 28 23 chr1 119932307 119932452 -77262980 - L1_Mm LINE L1 -290 5593 5453 4 1500 270 0 0 0 chr1 119932452 119932482 -77262950 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1500 474 61 0 0 chr1 119932482 119932547 -77262885 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 4 1500 1871 185 28 23 chr1 119932547 119932725 -77262707 - L1_Mm LINE L1 -431 5452 5268 4 1500 1702 55 0 5 chr1 119932769 119932987 -77262445 + L1Md_F2 LINE L1 6355 6571 -11 4 1500 2111 172 14 7 chr1 119932987 119933431 -77262001 - L1_Mur1 LINE L1 -1691 4186 3740 4 1500 7003 78 6 1 chr1 119933428 119934552 -77260880 - L1Md_F2 LINE L1 -12 6570 5442 4 1500 270 89 0 0 chr1 119934553 119934598 -77260834 - L1Md_F2 LINE L1 -828 5055 5011 4 1500 1364 113 0 0 chr1 119934598 119934810 -77260622 - L1Md_F2 LINE L1 -1188 4695 4484 4 1500 2753 68 3 0 chr1 119934812 119935195 -77260237 + L1_Mm LINE L1 2391 2774 -3109 4 1500 2343 167 12 31 chr1 119935172 119935787 -77259645 - L1_Mur1 LINE L1 -2103 3783 3184 4 1500 2052 151 25 0 chr1 119935761 119936165 -77259267 - L1_Mur1 LINE L1 -1089 2825 2412 4 1500 2159 130 3 3 chr1 119936165 119936474 -77258958 - RLTR27 LTR ERVK 0 309 1 4 1500 1397 169 0 22 chr1 119936474 119936741 -77258691 - MMERVK10C-int LTR ERVK 0 7581 7321 4 1500 359 308 17 17 chr1 119936875 119937047 -77258385 - MMERVK10C-int LTR ERVK -512 7069 6898 4 1500 776 218 5 14 chr1 119937561 119937791 -77257641 - MMERVK10C-int LTR ERVK -4270 3311 3121 4 1500 1321 294 18 16 chr1 119937789 119938290 -77257142 - MMERVK10C-int LTR ERVK -4360 3221 2720 4 1500 201 271 0 17 chr1 119938530 119938590 -77256842 + T-rich Low_complexity Low_complexity 2 60 0 4 1500 371 229 0 0 chr1 119938601 119938706 -77256726 - RLTR10-int LTR ERVK -1135 852 748 4 1500 290 48 48 0 chr1 119938857 119938899 -77256533 - RLTR10-int LTR ERVK -7314 267 224 4 1500 316 154 0 0 chr1 119938933 119938985 -77256447 - RLTR27 LTR ERVK 0 309 258 4 1500 767 227 54 8 chr1 119938997 119939255 -77256177 - L1_Mur1 LINE L1 -4171 1715 1446 4 1500 332 294 9 0 chr1 119939237 119939346 -77256086 - Lx3C LINE L1 -704 6272 6163 4 1500 356 156 0 0 chr1 119939347 119939411 -77256021 - L1_Mur1 LINE L1 -464 5422 5359 4 1500 183 220 0 0 chr1 119939426 119939476 -77255956 + CT-rich Low_complexity Low_complexity 2 51 0 4 1500 1773 208 46 12 chr1 119939492 119939905 -77255527 - Lx3C LINE L1 -9 6967 6541 4 1500 4703 128 8 8 chr1 119939901 119940762 -77254670 - MusHAL1 LINE L1 -1752 960 100 4 1500 210 37 0 0 chr1 119940777 119940804 -77254628 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1500 963 160 0 0 chr1 119940804 119940948 -77254484 - B1_Mus2 SINE Alu -3 144 1 4 1500 2516 170 35 12 chr1 119940950 119941433 -77253999 - L1VL4 LINE L1 -5596 706 213 4 1500 2039 125 42 28 chr1 119941666 119942019 -77253413 - RLTR45 LTR ERVK -124 358 1 4 1500 6526 64 1 2 chr1 119942019 119942875 -77252557 - RLTR45-int LTR ERVK 0 7244 6390 4 1500 603 242 28 28 chr1 119943384 119944607 -77250825 + MMSAT4 Satellite Satellite 1 1222 0 4 1500 290 217 0 0 chr1 119944720 119944780 -77250652 + MMSAT4 Satellite Satellite 31 90 -78 4 1500 35 54 0 0 chr1 119945283 119945339 -77250093 + AT_rich Low_complexity Low_complexity 1 56 0 4 1500 2339 153 29 37 chr1 119945568 119945830 -77249602 - MTB_Mm LTR MaLR 0 407 145 4 1500 4115 220 41 12 chr1 119945830 119946710 -77248722 - RMER13B LTR ERVK 0 908 4 4 1500 2339 153 29 37 chr1 119946710 119946855 -77248577 - MTB_Mm LTR MaLR -263 144 3 4 1500 6476 93 16 6 chr1 119946890 119947982 -77247450 - L1Md_F2 LINE L1 -13 6569 5461 4 1500 2331 189 60 21 chr1 119947986 119948500 -77246932 - MT-int LTR MaLR -2 1096 563 4 1500 4722 163 2 8 chr1 119948500 119949439 -77245993 + MusHAL1 LINE L1 1345 2278 -434 4 1500 4623 133 9 15 chr1 119949454 119950919 -77244513 + L1Md_F LINE L1 380 1835 -4048 4 1500 29545 92 8 80 chr1 119950920 119957548 -77237884 + L1_Mus1 LINE L1 217 6567 0 4 1500 21 36 0 0 chr1 119957548 119957576 -77237856 + AT_rich Low_complexity Low_complexity 1 28 0 4 1500 217 379 0 0 chr1 119957837 119957903 -77237529 - B4 SINE B4 -139 153 88 4 1500 811 250 17 61 chr1 119959735 119959965 -77235467 - URR1B DNA MER1_type 0 225 6 4 1500 1183 137 0 0 chr1 119960210 119960392 -77235040 - L1_Mus2 LINE L1 0 6566 6385 4 1500 248 86 0 0 chr1 119960392 119960427 -77235005 - L1_Mus2 LINE L1 -313 6253 6219 4 1500 1657 99 0 4 chr1 119960424 119960678 -77234754 - L1_Mm LINE L1 -3287 2596 2344 4 1500 351 283 14 14 chr1 119960690 119960830 -77234602 + MurSatRep1 Unknown Unknown 606 745 -1392 4 1500 951 111 7 14 chr1 119961191 119961337 -77234095 + B1_Mus1 SINE Alu 2 146 -2 4 1500 1380 184 44 30 chr1 119961840 119962137 -77233295 - Lx3B LINE L1 -10 6963 6663 4 1500 3693 98 2 0 chr1 119962137 119962646 -77232786 + L1_Mus1 LINE L1 6056 6565 -2 4 1500 5873 152 9 4 chr1 119962994 119964165 -77231267 - Lx3B LINE L1 -296 6677 5499 4 1500 1665 193 49 2 chr1 119964170 119964575 -77230857 - Lx3B LINE L1 -1010 4867 4444 4 1500 7850 36 12 0 chr1 119964560 119965765 -77229667 - L1Md_T LINE L1 -2 6580 5362 4 1500 24969 69 8 11 chr1 119965765 119970157 -77225275 - L1Md_T LINE L1 -1409 4474 98 4 1500 20853 40 4 8 chr1 119970169 119972918 -77222514 - L1_Mm LINE L1 -1403 4480 1742 4 1500 2739 144 21 17 chr1 119972924 119973397 -77222035 - L1VL2 LINE L1 -5630 705 231 4 1500 654 193 47 5 chr1 119973482 119973675 -77221757 - Lx3B LINE L1 -1949 3928 3728 4 1500 17867 115 25 19 chr1 119973675 119977408 -77218024 + L1_Mus1 LINE L1 510 4265 -1618 4 1500 4215 134 19 7 chr1 119977407 119978589 -77216843 + L1_Mus1 LINE L1 5105 6297 -270 4 1500 4688 189 21 35 chr1 119978606 119979454 -77215978 + L1Md_A LINE L1 238 1100 -5624 4 1500 3351 40 2 0 chr1 119979454 119979849 -77215583 + MTA_Mm LTR MaLR 1 396 0 4 1500 4688 104 21 7 chr1 119979849 119980469 -77214963 + L1Md_A LINE L1 1101 1701 -4182 4 1500 10484 120 23 31 chr1 119980565 119980926 -77214506 + L1VL2 LINE L1 535 896 -2719 4 1500 225 178 22 0 chr1 119980926 119980971 -77214461 + B4 SINE B4 2 47 -245 4 1500 10484 120 23 31 chr1 119980971 119982777 -77212655 + L1VL2 LINE L1 897 2711 -904 4 1500 7472 163 29 4 chr1 119982772 119984343 -77211089 + Lx2 LINE L1 5390 6996 -1 4 1500 303 164 0 0 chr1 119984482 119984543 -77210889 + GA-rich Low_complexity Low_complexity 3 63 0 4 1500 552 260 0 6 chr1 119984543 119984700 -77210732 + L1_Rod LINE L1 5548 5684 -196 4 1500 2210 102 29 3 chr1 119984857 119985200 -77210232 + L1_Mus3 LINE L1 6276 6627 -11 4 1500 1648 146 15 6 chr1 119985224 119985554 -77209878 + MusHAL1 LINE L1 181 513 -2199 4 1500 720 271 207 7 chr1 119985554 119985829 -77209603 + RMER15 LTR ERVL 246 575 0 4 1500 655 385 8 8 chr1 119985951 119986210 -77209222 + B4A SINE B4 33 291 -1 4 1500 548 308 59 20 chr1 119986719 119986921 -77208511 - B4 SINE B4 -72 220 11 4 1500 367 138 0 17 chr1 119986924 119986983 -77208449 - HAL1-3A_ME LINE L1 -825 2033 1976 4 1500 224 264 22 0 chr1 119986983 119987074 -77208358 + (TATATG)n Simple_repeat Simple_repeat 5 97 0 4 1500 218 81 0 26 chr1 119987269 119987307 -77208125 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 1500 298 373 40 0 chr1 119987324 119987450 -77207982 - RSINE1 SINE B4 -3 162 32 4 1500 7155 40 0 0 chr1 119987855 119988713 -77206719 + L1Md_T LINE L1 5725 6582 0 4 1500 3031 65 99 0 chr1 119988786 119989218 -77206214 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1500 2397 107 8 8 chr1 119989552 119989911 -77205521 - L1_Mus3 LINE L1 0 6638 6280 4 1500 498 333 48 29 chr1 119989982 119990189 -77205243 - ID_B1 SINE B4 -1 223 13 4 1500 960 96 0 42 chr1 119990219 119990361 -77205071 - B1_Mus1 SINE Alu -12 136 1 4 1500 3792 166 17 6 chr1 119990468 119991163 -77204269 - Lx2 LINE L1 -2 6995 6293 4 1500 761 215 0 6 chr1 119991193 119991366 -77204066 - Lx4B LINE L1 -453 6605 6434 4 1500 229 328 0 0 chr1 119991690 119991748 -77203684 - B1_Mus1 SINE Alu -82 66 9 4 1500 31546 9 0 1 chr1 119993402 119998640 -77196792 + L1Md_T LINE L1 1 4995 -888 4 1500 3062 0 0 0 chr1 119998640 119998978 -77196454 + L1Md_T LINE L1 6245 6582 0 4 1500 5024 61 0 1 chr1 119998978 119999983 -77195449 - L1_Mm LINE L1 -1293 4590 3931 4 1500 4774 77 31 47 chr1 120000000 120001349 -77194083 - L1Md_Gf LINE L1 -4240 1646 376 1 1500 2769 181 384 17 chr1 120001484 120001591 -77193841 - L1_Mm LINE L1 -184 5699 5594 2 1500 3485 164 36 23 chr1 120001591 120002332 -77193100 - RMER17A LTR ERVK 0 751 1 3 1500 2769 181 384 17 chr1 120002332 120002479 -77192953 - L1_Mm LINE L1 -290 5593 5451 2 1500 278 26 0 25 chr1 120002479 120002519 -77192913 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1500 2769 181 384 17 chr1 120002519 120003141 -77192291 - L1_Mm LINE L1 -433 5450 4500 2 1500 15261 98 18 9 chr1 120003138 120005385 -77190047 - L1Md_F2 LINE L1 -637 5945 3701 5 1500 34944 84 2 3 chr1 120005363 120011834 -77183598 - L1Md_F2 LINE L1 -9 6573 108 6 1500 9824 100 2 1 chr1 120011830 120013226 -77182206 - L1Md_F2 LINE L1 -2150 3733 2336 5 1500 1819 194 31 10 chr1 120013261 120013652 -77181780 - RLTR45-int LTR ERVK -2249 4995 4597 7 1500 414 247 0 0 chr1 120013632 120013705 -77181727 - RLTR45-int LTR ERVK -3312 4094 4022 7 1500 6040 40 0 0 chr1 120013705 120014413 -77181019 - L1Md_A LINE L1 0 6582 5875 8 1500 6260 109 2 0 chr1 120014413 120015285 -77180147 - L1Md_F LINE L1 -5383 1136 263 9 1500 1382 240 36 7 chr1 120015290 120015734 -77179698 - L1_Mur1 LINE L1 -3970 1916 1460 1 1500 453 254 30 26 chr1 120015730 120015979 -77179453 - Lx3C LINE L1 -708 6273 6023 1 1500 1886 217 45 12 chr1 120015989 120016409 -77179023 - Lx3C LINE L1 -2 6974 6541 1 1500 4476 141 33 11 chr1 120016405 120017247 -77178185 - MusHAL1 LINE L1 -1752 960 100 1 1500 978 145 0 0 chr1 120017257 120017402 -77178030 - B1_Mus2 SINE Alu -2 145 1 1 1500 2543 185 27 14 chr1 120017405 120017893 -77177539 - L1VL4 LINE L1 -5602 700 207 1 1500 38706 31 0 2 chr1 120018690 120025429 -77170003 - L1Md_T LINE L1 0 6585 1 1 1500 659 236 26 26 chr1 120025441 120026851 -77168581 + MMSAT4 Satellite Satellite 1 1410 0 1 1500 255 217 0 0 chr1 120027047 120027093 -77168339 + MMSAT4 Satellite Satellite 31 76 -92 1 1500 24 0 0 0 chr1 120027539 120027563 -77167869 + AT_rich Low_complexity Low_complexity 1 24 0 1 1500 2110 165 27 34 chr1 120027790 120028053 -77167379 - MTB_Mm LTR MaLR 0 407 145 2 1500 3737 236 39 12 chr1 120028053 120028936 -77166496 - RMER13B LTR ERVK 0 908 3 2 1500 2110 165 27 34 chr1 120028936 120029080 -77166352 - MTB_Mm LTR MaLR -263 144 3 2 1500 7068 96 13 2 chr1 120029115 120030206 -77165226 - L1Md_F2 LINE L1 -13 6569 5462 2 1500 2029 176 64 18 chr1 120030211 120030713 -77164719 - MT-int LTR MaLR -2 1096 572 2 1500 4641 175 17 3 chr1 120030725 120031646 -77163786 + L1_Mm LINE L1 2549 3482 -2401 2 1500 4584 151 9 1 chr1 120031660 120032397 -77163035 + L1Md_F LINE L1 283 1025 -5494 2 1500 3132 143 50 3 chr1 120032397 120032984 -77162448 + L1Md_A LINE L1 634 1208 -5519 2 1500 21351 53 1 3 chr1 120032968 120035646 -77159786 + L1Md_F3 LINE L1 2912 5585 -298 2 1500 8069 47 7 6 chr1 120035647 120036644 -77158788 + L1Md_F3 LINE L1 5587 6584 0 2 1500 546 270 18 16 chr1 120036645 120037167 -77158265 + MMSAT4 Satellite Satellite 1 523 0 1 1500 239 308 36 26 chr1 120037365 120037511 -77157921 + MMSAT4 Satellite Satellite 1 147 -5 2 1500 2273 47 27 2 chr1 120037546 120037862 -77157570 - IAPLTR2b LTR ERVK -17 310 1 2 1500 6922 78 12 16 chr1 120037862 120038787 -77156645 - IAPEz-int LTR ERVK 0 6481 5561 2 1500 1704 125 275 49 chr1 120038787 120039234 -77156198 - RLTR6_Mm LTR ERV1 -70 584 37 3 1500 65043 31 26 0 chr1 120039347 120046943 -77148489 - RLTR6-int LTR ERV1 0 7778 1 3 1500 1692 125 276 49 chr1 120046943 120047388 -77148044 - RLTR6_Mm LTR ERV1 -65 589 44 3 1500 346 49 0 0 chr1 120047509 120047550 -77147882 - IAPEz-int LTR ERVK -917 5564 5524 3 1500 216 0 0 0 chr1 120047614 120047638 -77147794 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1500 6476 97 6 2 chr1 120047638 120048506 -77146926 - IAPEz-int LTR ERVK -955 5526 4656 3 1500 1969 59 4 0 chr1 120048505 120048744 -77146688 - IAPEY3-int LTR ERVK -5183 2497 2258 3 1500 394 70 0 0 chr1 120048749 120048806 -77146626 - B1_Mus1 SINE Alu -91 57 1 3 1500 4289 121 92 114 chr1 120048806 120049783 -77145649 - IAPEz-int LTR ERVK -5486 995 3 3 1500 2152 61 41 16 chr1 120049783 120050101 -77145331 - IAPLTR2b LTR ERVK -1 326 1 3 1500 239 306 22 7 chr1 120050101 120050236 -77145196 + MMSAT4 Satellite Satellite 32 168 0 3 1500 24 67 0 0 chr1 120050453 120050498 -77144934 + AT_rich Low_complexity Low_complexity 1 45 0 3 1500 2355 131 30 30 chr1 120050848 120051110 -77144322 - MTB_Mm LTR MaLR 0 407 147 3 1500 3944 221 49 16 chr1 120051110 120051989 -77143443 - RMER13B LTR ERVK 0 908 1 3 1500 2355 131 30 30 chr1 120051989 120052129 -77143303 - MTB_Mm LTR MaLR -261 146 5 3 1500 4879 154 15 176 chr1 120052132 120053441 -77141991 - MTB_Mm-int LTR MaLR 0 1098 1 3 1500 1424 88 56 0 chr1 120053441 120053656 -77141776 - MTB_Mm LTR MaLR 0 407 181 3 1500 3114 96 30 0 chr1 120053656 120054209 -77141223 - L1_Mus4 LINE L1 -614 6022 5457 4 1500 1007 142 0 34 chr1 120054209 120054384 -77141048 - MTB_Mm LTR MaLR -211 196 28 3 1500 5379 105 16 14 chr1 120054438 120055289 -77140143 + RLTR13D5 LTR ERVK 30 882 -141 4 1500 31159 82 6 13 chr1 120055289 120060612 -77134820 + L1Md_F2 LINE L1 299 5586 -297 4 1500 8038 50 2 0 chr1 120060612 120061594 -77133838 + L1Md_F2 LINE L1 5587 6570 -12 4 1500 213 39 0 0 chr1 120061855 120061881 -77133551 + (TAA)n Simple_repeat Simple_repeat 1 26 0 4 1501 4642 120 6 3 chr1 120062362 120063557 -77131875 + L1_Mus1 LINE L1 5099 6297 -270 4 1501 4729 160 13 21 chr1 120063558 120065052 -77130380 + L1Md_A LINE L1 238 1701 -4182 4 1501 527 320 94 15 chr1 120065487 120065690 -77129742 - B4 SINE B4 -72 220 2 4 1501 528 16 0 0 chr1 120065705 120065766 -77129666 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1501 268 305 19 0 chr1 120065766 120065866 -77129566 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1501 218 81 0 26 chr1 120066024 120066062 -77129370 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 1501 327 344 48 8 chr1 120066083 120066209 -77129223 - RSINE1 SINE B4 -3 162 32 5 1501 230 336 26 70 chr1 120066433 120066548 -77128884 - MTE2b LTR MaLR -29 350 241 5 1501 2301 99 50 3 chr1 120066983 120067326 -77128106 - L1_Mus3 LINE L1 0 6638 6280 5 1501 447 369 39 19 chr1 120067397 120067604 -77127828 - ID_B1 SINE B4 -1 223 13 5 1501 1043 101 0 0 chr1 120067619 120067757 -77127675 - B1_Mus1 SINE Alu -10 138 1 5 1501 5620 181 8 6 chr1 120067864 120068933 -77126499 - Lx2 LINE L1 0 6997 5926 5 1501 238 379 34 54 chr1 120068970 120069118 -77126314 - RSINE1 SINE B4 0 165 21 5 1501 573 345 21 46 chr1 120069116 120069353 -77126079 - B4A SINE B4 -61 231 1 5 1501 596 283 47 0 chr1 120069694 120069885 -77125547 - Lx4B LINE L1 -258 6800 6601 5 1501 5910 113 24 20 chr1 120069893 120071310 -77124122 + L1_Mus2 LINE L1 5145 6566 0 5 1501 1027 131 0 0 chr1 120071321 120071466 -77123966 + B1_Mus2 SINE Alu 2 146 -1 6 1501 773 215 0 6 chr1 120071517 120071690 -77123742 - Lx4B LINE L1 -453 6605 6434 5 1501 226 349 0 0 chr1 120072014 120072077 -77123355 - PB1D9 SINE Alu -55 65 3 6 1501 671 254 21 60 chr1 120073883 120074117 -77121315 - URR1B DNA MER1_type 0 225 1 6 1501 292 155 17 17 chr1 120074373 120074387 -77121045 - L1_Mus2 LINE L1 -299 6267 6254 6 1501 1253 115 0 0 chr1 120074387 120074569 -77120863 - L1_Mus2 LINE L1 0 6566 6385 6 1501 292 155 17 17 chr1 120074569 120074613 -77120819 - L1_Mus2 LINE L1 -313 6253 6209 6 1501 1617 107 0 0 chr1 120074601 120074854 -77120578 - MusHAL1 LINE L1 -1320 1392 1140 6 1501 337 283 32 13 chr1 120074866 120075020 -77120412 + MurSatRep1 Unknown Unknown 606 762 -1375 6 1501 998 117 7 0 chr1 120075367 120075512 -77119920 + B1_Mus1 SINE Alu 2 147 -1 6 1501 1350 191 43 30 chr1 120076012 120076315 -77119117 - Lx3B LINE L1 -4 6969 6663 6 1501 3624 82 4 38 chr1 120076316 120076845 -77118587 + L1_Mus1 LINE L1 6057 6567 0 6 1501 27 0 0 0 chr1 120077171 120077198 -77118234 + AT_rich Low_complexity Low_complexity 1 27 0 7 1501 6299 141 6 10 chr1 120077198 120077222 -77118210 - Lx3B LINE L1 -300 6673 6652 6 1501 6151 105 19 12 chr1 120077222 120078173 -77117259 + RLTR13A2 LTR ERVK 1 958 0 7 1501 6299 137 5 8 chr1 120078173 120079330 -77116102 - Lx3B LINE L1 -322 6651 5499 6 1501 3432 205 34 6 chr1 120079328 120080203 -77115229 - Lx3B LINE L1 -1003 4874 3975 6 1501 21 82 0 0 chr1 120080261 120080310 -77115122 + AT_rich Low_complexity Low_complexity 1 49 0 7 1501 730 93 0 0 chr1 120080431 120080539 -77114893 - L1_Mus4 LINE L1 -937 5699 5592 7 1501 3591 156 38 35 chr1 120080545 120081283 -77114149 - RMER17A LTR ERVK -11 740 1 7 1501 1511 181 6 80 chr1 120081285 120081646 -77113786 - L1_Mus4 LINE L1 -287 5596 5263 7 1501 12270 186 18 27 chr1 120081649 120084331 -77111101 - L1_Mur1 LINE L1 -949 4937 2260 7 1501 3688 41 0 0 chr1 120084331 120084769 -77110663 - L1Md_T LINE L1 0 6582 6145 7 1501 12270 186 18 27 chr1 120084769 120084919 -77110513 - L1_Mur1 LINE L1 -3627 2259 2132 7 1501 711 105 0 9 chr1 120084917 120085023 -77110409 - L1Md_F2 LINE L1 -155 6412 6308 7 1501 23815 90 15 13 chr1 120085028 120088935 -77106497 - L1Md_F2 LINE L1 -443 6139 2248 7 1501 7276 56 3 0 chr1 120088931 120089884 -77105548 - L1Md_F2 LINE L1 0 6582 5627 7 1501 2703 91 2 0 chr1 120089896 120090313 -77105119 + L1_Mm LINE L1 1785 2202 -3681 7 1501 430 143 13 0 chr1 120090306 120090383 -77105049 - L1Md_F2 LINE L1 -3618 2265 2188 7 1501 5853 106 7 0 chr1 120090381 120092024 -77103408 - L1Md_F2 LINE L1 -3869 2014 360 7 1501 1159 254 38 7 chr1 120092029 120092472 -77102960 - L1_Mur1 LINE L1 -3970 1916 1460 7 1501 402 266 9 0 chr1 120092468 120092577 -77102855 - Lx3C LINE L1 -704 6272 6163 8 1501 330 172 67 106 chr1 120092550 120092654 -77102778 - L1_Mur1 LINE L1 -699 5465 5360 8 1501 243 203 0 0 chr1 120092657 120092716 -77102716 + CT-rich Low_complexity Low_complexity 2 60 0 8 1501 1726 221 44 12 chr1 120092731 120093143 -77102289 - Lx3C LINE L1 -9 6967 6543 8 1501 4456 138 19 8 chr1 120093141 120093993 -77101439 - MusHAL1 LINE L1 -1752 960 100 8 1501 939 159 0 0 chr1 120093997 120094142 -77101290 - B1_Mus2 SINE Alu -2 145 1 8 1501 2492 186 12 10 chr1 120094145 120094638 -77100794 - L1VL4 LINE L1 -5602 700 207 8 1501 678 219 23 23 chr1 120095346 120098011 -77097421 + MMSAT4 Satellite Satellite 1 2665 0 8 1501 1613 169 4 0 chr1 120099041 120099302 -77096130 - MTB_Mm LTR MaLR -1 406 145 8 1501 1031 277 67 11 chr1 120099302 120099572 -77095860 - RMER13B LTR ERVK 0 908 624 8 1501 2524 192 32 13 chr1 120099554 120100018 -77095414 - RMER13B LTR ERVK -433 475 3 8 1501 668 147 92 128 chr1 120100018 120100178 -77095254 - MTB_Mm LTR MaLR -251 156 3 8 1501 6580 93 11 4 chr1 120100216 120101316 -77094116 - L1Md_F2 LINE L1 -13 6569 5461 9 1501 2295 181 64 23 chr1 120101318 120101833 -77093599 - MT-int LTR MaLR 0 1098 563 9 1501 4749 157 5 2 chr1 120101833 120102764 -77092668 + MusHAL1 LINE L1 1345 2278 -434 9 1501 5737 132 5 26 chr1 120102775 120104635 -77090797 + L1_Mus2 LINE L1 173 1991 -3892 9 1501 2431 162 53 26 chr1 120104635 120105104 -77090328 + RLTR45 LTR ERVK 1 482 0 9 1501 5110 110 1 9 chr1 120105104 120105172 -77090260 + L1_Mus2 LINE L1 1992 2059 -3824 9 1501 12499 125 4 11 chr1 120105214 120108106 -77087326 + L1_Mus2 LINE L1 3697 6566 0 9 1501 22 0 0 0 chr1 120108108 120108130 -77087302 + AT_rich Low_complexity Low_complexity 1 22 0 9 1501 1648 130 36 0 chr1 120108187 120108464 -77086968 - L1_Mm LINE L1 -1608 4275 3989 9 1501 1155 151 47 0 chr1 120108466 120108678 -77086754 + L1VL1 LINE L1 541 762 -5660 9 1501 18464 96 5 20 chr1 120108664 120112250 -77083182 + L1Md_Gf LINE L1 472 3957 -1929 9 1501 1032 89 0 0 chr1 120112250 120112385 -77083047 + MT2C_Mm LTR ERVL 298 432 -43 9 1501 1509 48 16 0 chr1 120112385 120112572 -77082860 + L1Md_F3 LINE L1 6381 6570 -14 1 1501 10613 188 17 162 chr1 120112572 120114399 -77081033 + L1Md_Gf LINE L1 3957 5592 -297 9 1501 8834 35 6 0 chr1 120114399 120115389 -77080043 + L1Md_T LINE L1 5587 6582 0 1 1501 9617 71 10 9 chr1 120115390 120116646 -77078786 + L1Md_F2 LINE L1 4329 5586 -297 1 1501 8776 38 2 0 chr1 120116647 120117629 -77077803 + L1Md_F2 LINE L1 5588 6571 -11 1 1501 195 42 0 0 chr1 120117636 120117660 -77077772 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1501 30694 102 5 4 chr1 120117661 120122957 -77072475 + L1_Mus1 LINE L1 1266 6567 0 1 1501 25 0 0 0 chr1 120122957 120122982 -77072450 + AT_rich Low_complexity Low_complexity 1 25 0 1 1501 4339 140 3 5 chr1 120123181 120123848 -77071584 - Lx LINE L1 -249 6405 5740 1 1501 6716 84 30 5 chr1 120123827 120124777 -77070655 - MusHAL1 LINE L1 -984 1728 755 1 1501 1862 131 68 83 chr1 120124812 120125163 -77070269 - ORR1B1 LTR MaLR -8 386 41 1 1501 328 261 60 51 chr1 120125213 120125329 -77070103 + B1F2 SINE Alu 3 119 -30 1 1501 389 345 14 14 chr1 120125329 120125476 -77069956 + B1F SINE Alu 1 147 -2 1 1501 516 58 0 0 chr1 120125634 120125703 -77069729 - L1_Mus2 LINE L1 0 6566 6498 1 1501 216 67 0 0 chr1 120125805 120125835 -77069597 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1501 8026 66 3 1 chr1 120126027 120127037 -77068395 - L1Md_F2 LINE L1 0 6582 5597 1 1501 304 50 0 0 chr1 120127051 120127091 -77068341 - L1_Mm LINE L1 -3051 2832 2793 1 1501 279 143 0 20 chr1 120127366 120127416 -77068016 - RMER3D-int LTR ERVK -733 2109 2061 1 1501 2172 133 31 17 chr1 120127425 120127777 -77067655 - RLTR13D2 LTR ERVK -666 357 1 1 1501 496 141 11 0 chr1 120127835 120127927 -77067505 - L1VL1 LINE L1 -6327 95 3 1 1501 441 178 20 0 chr1 120128072 120128224 -77067208 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1501 483 288 92 46 chr1 120128263 120128283 -77067149 - B3A SINE B2 -36 162 149 1 1501 297 128 0 0 chr1 120128283 120128330 -77067102 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1501 483 288 92 46 chr1 120128330 120128462 -77066970 - B3A SINE B2 -50 148 3 1 1501 446 299 56 65 chr1 120128467 120128682 -77066750 - B3 SINE B2 0 216 4 1 1501 342 0 0 0 chr1 120128703 120128741 -77066691 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 1501 580 289 39 38 chr1 120128744 120129028 -77066404 - L1MA6 LINE L1 -21 6279 5998 1 1501 201 147 0 0 chr1 120129039 120129073 -77066359 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1501 647 321 16 21 chr1 120129076 120129267 -77066165 - ID_B1 SINE B4 -10 214 25 1 1501 879 282 113 21 chr1 120129565 120129945 -77065487 + MTD LTR MaLR 5 419 0 1 1501 186 133 0 0 chr1 120130164 120130194 -77065238 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 1501 5396 34 2 2 chr1 120130204 120130803 -77064629 + L1Md_T LINE L1 5982 6580 -2 1 1501 1078 279 29 70 chr1 120130871 120130909 -77064523 - ORR1E LTR MaLR -29 330 301 1 1501 1278 48 0 7 chr1 120130909 120131057 -77064375 + B1_Mm SINE Alu 1 147 0 1 1501 1078 279 29 70 chr1 120131057 120131361 -77064071 - ORR1E LTR MaLR -59 300 2 1 1501 983 284 83 57 chr1 120131533 120131924 -77063508 - MTE2a LTR MaLR 0 379 8 1 1501 307 305 97 22 chr1 120132404 120132538 -77062894 + MLT1A1 LTR MaLR 257 400 -8 1 1501 32170 76 5 1 chr1 120133800 120138815 -77056617 - L1Md_F2 LINE L1 -1 6581 1546 1 1501 36071 68 4 4 chr1 120138808 120145026 -77050406 - L1Md_F2 LINE L1 -1 6584 271 1 1501 5891 193 29 26 chr1 120145027 120146333 -77049099 - L1Md_F2 LINE L1 -5410 1314 5 1 1501 434 336 36 0 chr1 120147803 120147940 -77047492 - RSINE1 SINE B4 -16 149 8 1 1501 894 284 84 91 chr1 120147984 120148426 -77047006 + MT2A LTR ERVL 93 531 -2 1 1501 1368 230 72 42 chr1 120148560 120148937 -77046495 - MTD LTR MaLR -31 388 1 1 1501 6860 157 89 25 chr1 120149823 120151550 -77043882 - L1_Mur2 LINE L1 -411 5466 2050 1 1501 396 0 0 0 chr1 120151550 120151594 -77043838 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1501 6860 153 107 15 chr1 120151594 120151884 -77043548 - L1_Mur2 LINE L1 -3828 2049 1722 1 1501 3446 201 23 3 chr1 120151938 120153028 -77042404 + Lx5 LINE L1 5234 6362 -688 1 1501 2016 286 65 91 chr1 120153130 120153932 -77041500 - RMER1C Other Other -424 918 149 1 1501 3188 50 0 0 chr1 120153932 120154289 -77041143 + IAPEY2_LTR LTR ERVK 1 357 0 1 1501 2016 286 65 91 chr1 120154289 120154399 -77041033 - RMER1C Other Other -1194 148 30 1 1501 23 33 0 0 chr1 120154848 120154878 -77040554 + AT_rich Low_complexity Low_complexity 1 30 0 1 1501 295 265 10 10 chr1 120155326 120155425 -77040007 + L1MC4 LINE L1 7730 7828 -214 1 1501 662 299 20 56 chr1 120155527 120155725 -77039707 - B3A SINE B2 0 198 8 1 1501 1202 62 14 0 chr1 120155775 120155920 -77039512 + B1_Mus1 SINE Alu 2 148 0 1 1501 1379 101 27 0 chr1 120156496 120156684 -77038748 + B2_Mm2 SINE B2 1 193 -2 1 1501 342 0 0 0 chr1 120156737 120156775 -77038657 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1501 370 227 173 0 chr1 120156853 120156963 -77038469 - B4 SINE B4 -163 129 1 1 1501 681 241 120 13 chr1 120156974 120157253 -77038179 - MTD LTR MaLR -91 328 1 1 1501 515 302 49 58 chr1 120157257 120157437 -77037995 + RMER5 LTR ERV1 294 477 -57 1 1501 461 97 0 27 chr1 120157437 120157511 -77037921 + Lx2 LINE L1 6926 6997 0 1 1501 515 302 49 58 chr1 120157511 120157555 -77037877 + RMER5 LTR ERV1 478 515 -19 1 1501 849 285 34 150 chr1 120157746 120157921 -77037511 + ORR1C2 LTR MaLR 1 121 -246 1 1501 1228 40 0 7 chr1 120157921 120158073 -77037359 - L1Md_A LINE L1 -2 6580 6430 1 1501 908 262 38 17 chr1 120158073 120158310 -77037122 + ORR1C2 LTR MaLR 141 382 -2 1 1501 5579 69 14 1 chr1 120158399 120159093 -77036339 + Lx3_Mus LINE L1 6305 7007 -2 1 1501 1573 55 11 0 chr1 120159109 120159290 -77036142 + B2_Mm2 SINE B2 2 184 -11 1 1501 810 122 311 0 chr1 120159290 120159438 -77035994 + B2_Mm2 SINE B2 2 195 0 1 1501 217 179 22 45 chr1 120159483 120159564 -77035868 + T-rich Low_complexity Low_complexity 1 79 0 1 1501 375 276 332 0 chr1 120159592 120159773 -77035659 - B4A SINE B4 -18 274 34 1 1501 1293 244 50 21 chr1 120160131 120160411 -77035021 - B4A SINE B4 0 292 5 1 1501 247 302 107 25 chr1 120161232 120161354 -77034078 - ORR1E LTR MaLR -224 135 4 1 1501 250 115 19 19 chr1 120161428 120161481 -77033951 + CT-rich Low_complexity Low_complexity 2 54 0 1 1501 414 221 0 94 chr1 120161566 120161583 -77033849 + RSINE1 SINE B4 2 18 -147 1 1501 1334 240 96 48 chr1 120161583 120161981 -77033451 + MTD LTR MaLR 1 417 -2 1 1501 414 221 0 94 chr1 120161981 120162048 -77033384 + RSINE1 SINE B4 19 78 -87 1 1501 392 247 11 0 chr1 120162644 120162733 -77032699 + PB1D9 SINE Alu 28 117 -3 1 1501 309 217 0 16 chr1 120162768 120162829 -77032603 + HAL1-3A_ME LINE L1 1976 2035 -823 1 1501 753 315 50 0 chr1 120163141 120163322 -77032110 + ID_B1 SINE B4 4 193 -31 1 1501 235 293 48 12 chr1 120163255 120163338 -77032094 - YREP_Mm Unknown Unknown -1541 271 186 1 1501 306 0 0 0 chr1 120163339 120163373 -77032059 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1501 206 247 121 24 chr1 120163579 120163662 -77031770 - MER91B DNA Tip100 -11 179 89 1 1501 615 289 93 21 chr1 120164019 120164213 -77031219 + ID_B1 SINE B4 2 209 -15 1 1501 653 131 10 0 chr1 120164519 120164618 -77030814 + B1_Mur2 SINE Alu 42 141 -8 1 1501 946 229 63 18 chr1 120164908 120165124 -77030308 + B4 SINE B4 2 227 -65 1 1501 555 265 114 0 chr1 120165124 120165256 -77030176 + RSINE1 SINE B4 2 148 -17 1 1501 5203 163 36 33 chr1 120165267 120166172 -77029260 - RMER13B LTR ERVK 0 908 1 1 1501 232 315 0 99 chr1 120166204 120166285 -77029147 + B4 SINE B4 216 288 -4 1 1501 1436 189 97 59 chr1 120167939 120168311 -77027121 + MTD LTR MaLR 8 393 -26 1 1501 2732 184 42 11 chr1 120168311 120168854 -77026578 + RLTR20B2 LTR ERVK 1 560 0 1 1501 971 202 81 14 chr1 120169065 120169286 -77026146 + Lx8 LINE L1 6721 6956 -517 1 1501 295 359 0 0 chr1 120169287 120169390 -77026042 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1501 21 0 0 0 chr1 120169556 120169577 -77025855 + AT_rich Low_complexity Low_complexity 1 21 0 1 1501 470 231 106 56 chr1 120169588 120169730 -77025702 + B1_Mur1 SINE Alu 1 149 0 1 1501 224 122 24 0 chr1 120170397 120170438 -77024994 + (CATTC)n Simple_repeat Simple_repeat 1 42 0 1 1501 1286 242 87 11 chr1 120170454 120170801 -77024631 + MTE2a LTR MaLR 1 373 -6 1 1501 351 0 0 0 chr1 120170890 120170929 -77024503 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1501 272 232 0 68 chr1 120172017 120172105 -77023327 + GA-rich Low_complexity Low_complexity 1 82 0 1 1501 724 85 0 85 chr1 120172311 120172440 -77022992 + L1_Mur2 LINE L1 1277 1394 -4483 1 1501 797 199 62 24 chr1 120172454 120172665 -77022767 + RLTR11A LTR ERVK 227 445 -83 1 1501 216 0 0 0 chr1 120172667 120172691 -77022741 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1501 19780 59 10 1 chr1 120172738 120175306 -77020126 + L1Md_F3 LINE L1 1427 5586 -297 1 1501 8266 45 3 6 chr1 120175307 120176307 -77019125 + L1Md_F3 LINE L1 5588 6584 0 1 1501 7947 96 45 15 chr1 120176347 120176903 -77018529 + L1_Mur2 LINE L1 1485 2049 -3828 1 1501 339 25 0 0 chr1 120176903 120176943 -77018489 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1501 7947 96 45 15 chr1 120176943 120177671 -77017761 + L1_Mur2 LINE L1 2050 2807 -3070 1 1501 5313 104 4 18 chr1 120177665 120178061 -77017371 + L1_Mur2 LINE L1 3728 4125 -1752 1 1501 1474 73 16 0 chr1 120178061 120178252 -77017180 + B2_Mm2 SINE B2 1 194 -1 1 1501 5313 104 4 18 chr1 120178252 120178595 -77016837 + L1_Mur2 LINE L1 4126 4458 -1419 1 1501 1109 69 7 0 chr1 120178595 120178740 -77016692 + B1_Mus1 SINE Alu 2 147 -1 1 1501 5313 104 4 18 chr1 120178740 120178789 -77016643 + L1_Mur2 LINE L1 4459 4506 -1371 1 1501 733 251 142 75 chr1 120178790 120179135 -77016297 - RLTR9A LTR ERVK 0 368 1 1 1501 323 216 72 101 chr1 120179244 120179383 -77016049 - IAP-d-int LTR ERVK -31 6511 6377 1 1501 8358 99 38 6 chr1 120179541 120180786 -77014646 - RMER16-int LTR ERVK -1635 3771 2488 1 1501 1968 169 0 9 chr1 120180796 120181113 -77014319 + L1VL4 LINE L1 2 315 -5987 1 1501 305 224 46 23 chr1 120181145 120181232 -77014200 - RLTR9A LTR ERVK -279 89 1 1 1501 8618 124 45 38 chr1 120181232 120183768 -77011664 + Lx4A LINE L1 4502 7057 -1 1 1501 439 316 78 0 chr1 120183786 120184004 -77011428 + L1M2 LINE L1 5054 5288 -855 1 1501 543 250 45 32 chr1 120184810 120184967 -77010465 + RSINE1 SINE B4 3 161 -4 2 1501 1860 206 122 10 chr1 120185044 120185535 -77009897 + RMER19B LTR ERVK 357 902 0 2 1501 468 35 0 0 chr1 120185655 120185713 -77009719 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1501 189 182 0 0 chr1 120185817 120185872 -77009560 + T-rich Low_complexity Low_complexity 1 55 0 2 1501 356 0 23 0 chr1 120185975 120186019 -77009413 + (CCA)n Simple_repeat Simple_repeat 1 45 0 2 1501 550 218 148 0 chr1 120186027 120186169 -77009263 - ID_B1 SINE B4 -60 164 2 2 1501 241 313 48 0 chr1 120186169 120186250 -77009182 + MER45A DNA Tip100 94 178 0 2 1501 225 0 0 0 chr1 120186555 120186580 -77008852 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1501 516 132 0 0 chr1 120186607 120186690 -77008742 + (TTG)n Simple_repeat Simple_repeat 2 84 0 2 1501 180 0 0 0 chr1 120186694 120186714 -77008718 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1501 259 186 200 30 chr1 120186814 120186914 -77008518 - Lx8 LINE L1 -54 7419 7303 2 1501 512 282 23 0 chr1 120186934 120187065 -77008367 - ID_B1 SINE B4 -89 135 2 2 1501 517 258 57 81 chr1 120187426 120187637 -77007795 - RMER10B LTR ERVL 0 398 193 2 1501 240 200 33 16 chr1 120187810 120187871 -77007561 + (CATA)n Simple_repeat Simple_repeat 1 62 0 2 1501 317 150 0 16 chr1 120187901 120187962 -77007470 + B1_Mur1 SINE Alu 83 142 -7 2 1501 1641 21 5 20 chr1 120188032 120188227 -77007205 + B2_Mm1a SINE B2 1 192 -1 2 1501 2643 186 42 6 chr1 120188280 120188832 -77006600 + Lx2B LINE L1 6367 6965 -11 2 1501 1357 44 6 0 chr1 120189187 120189368 -77006064 + MTB_Mm LTR MaLR 1 182 -225 2 1501 284 217 98 0 chr1 120189461 120189553 -77005879 - MLT1A1 LTR MaLR -305 103 3 2 1501 264 234 30 30 chr1 120189747 120189813 -77005619 + ID SINE ID 6 71 -153 2 1501 727 263 82 57 chr1 120189989 120190271 -77005161 - B4 SINE B4 0 292 4 2 1501 1016 38 0 0 chr1 120190286 120190419 -77005013 - L1Md_A LINE L1 0 6582 6450 2 1501 614 231 40 40 chr1 120190460 120190609 -77004823 - RSINE1 SINE B4 -15 150 2 2 1501 482 224 171 70 chr1 120190870 120191057 -77004375 - B3 SINE B2 -9 207 2 2 1501 454 219 13 122 chr1 120191121 120191178 -77004254 + MTE2a LTR MaLR 241 290 -89 2 1501 692 230 6 75 chr1 120191178 120191352 -77004080 + RSINE1 SINE B4 2 163 -2 2 1501 454 219 13 122 chr1 120191352 120191378 -77004054 + MTE2a LTR MaLR 291 309 -70 2 1501 188 35 35 0 chr1 120191378 120191407 -77004025 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1501 454 219 13 122 chr1 120191407 120191478 -77003954 + MTE2a LTR MaLR 310 379 0 2 1501 296 204 75 22 chr1 120191986 120192081 -77003351 + B4A SINE B4 1 97 -195 2 1501 2035 155 81 20 chr1 120192081 120192477 -77002955 - MTC LTR MaLR 0 421 2 2 187 1174 234 88 6 chr1 120192802 120193133 -77002299 + MTE2b LTR MaLR 22 379 0 2 1502 395 223 75 37 chr1 120193335 120193442 -77001990 + PB1 SINE Alu 1 111 -16 2 1502 396 310 16 0 chr1 120193539 120193668 -77001764 + ID_B1 SINE B4 4 134 -90 2 1502 384 283 17 50 chr1 120194108 120194227 -77001205 - MTEa LTR MaLR -263 116 2 2 1502 466 175 40 40 chr1 120194263 120194364 -77001068 - B3A SINE B2 -94 104 4 2 1502 823 226 116 0 chr1 120194401 120194600 -77000832 + ID_B1 SINE B4 1 222 -2 2 1502 286 242 65 0 chr1 120194612 120194674 -77000758 + ID4_ SINE ID 1 66 -17 2 1502 1080 84 28 0 chr1 120194893 120195035 -77000397 - B1_Mus1 SINE Alu -1 147 2 2 1502 361 231 22 11 chr1 120195264 120195356 -77000076 + PB1 SINE Alu 7 99 -28 2 1502 353 179 64 0 chr1 120195518 120195596 -76999836 + PB1D10 SINE Alu 26 108 -9 2 1502 310 274 0 74 chr1 120195888 120196010 -76999422 - PB1D10 SINE Alu 0 117 5 2 1502 255 178 93 27 chr1 120196229 120196304 -76999128 - ID2 SINE ID -1 82 3 2 1502 573 207 0 67 chr1 120198480 120198599 -76996833 + ID_B1 SINE B4 108 218 -6 2 1502 318 223 29 96 chr1 120198608 120198712 -76996720 + MT2B LTR ERVL 161 257 -344 2 1502 714 181 7 14 chr1 120198619 120198759 -76996673 + B1_Mur3 SINE Alu 11 149 0 2 1502 2736 158 30 121 chr1 120198911 120199251 -76996181 - RMER6A LTR ERVK 0 756 458 2 1502 1055 84 28 0 chr1 120199251 120199393 -76996039 - B1_Mus2 SINE Alu -1 146 1 2 1502 2736 158 30 121 chr1 120199393 120199765 -76995667 - RMER6A LTR ERVK -299 457 109 2 1502 767 239 16 43 chr1 120199899 120200087 -76995345 + B4 SINE B4 4 186 -106 2 1502 2229 18 4 0 chr1 120200091 120200369 -76995063 - MTA_Mm LTR MaLR -117 279 1 2 1502 1123 13 0 0 chr1 120200369 120200523 -76994909 - MTA_Mm-int LTR MaLR 0 1098 945 2 1502 441 264 37 9 chr1 120200597 120200704 -76994728 + RSINE1 SINE B4 51 160 -5 2 1502 1869 187 171 23 chr1 120200788 120201220 -76994212 + RLTR19 LTR ERVK 1 496 -3 2 1502 26 0 0 0 chr1 120201348 120201374 -76994058 + AT_rich Low_complexity Low_complexity 1 26 0 2 1502 234 258 70 30 chr1 120201502 120201602 -76993830 + RSINE1 SINE B4 34 137 -28 2 1502 333 82 0 0 chr1 120201665 120201714 -76993718 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1502 313 291 84 30 chr1 120202243 120202374 -76993058 + ID_B1 SINE B4 16 153 -71 2 1502 1649 126 12 12 chr1 120202379 120202636 -76992796 + ORR1B1 LTR MaLR 1 257 -137 2 1502 316 220 107 27 chr1 120202706 120202818 -76992614 + PB1 SINE Alu 7 127 0 2 1502 1489 54 22 0 chr1 120202955 120203140 -76992292 + B2_Mm2 SINE B2 1 189 -6 2 1502 364 280 132 25 chr1 120203141 120203262 -76992170 - B1F2 SINE Alu -15 134 1 2 1502 198 143 0 0 chr1 120203390 120203425 -76992007 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1502 480 296 0 43 chr1 120203498 120203639 -76991793 + B1F2 SINE Alu 2 136 -13 2 1502 551 247 35 71 chr1 120203826 120203996 -76991436 - ID_B1 SINE B4 -5 219 56 2 1502 1284 78 84 0 chr1 120204184 120204363 -76991069 + B2_Mm2 SINE B2 2 195 0 2 1502 1137 75 7 0 chr1 120204549 120204695 -76990737 + B1_Mus2 SINE Alu 1 147 0 2 1502 430 248 64 0 chr1 120204932 120205073 -76990359 + Lx9 LINE L1 7491 7640 -4 2 1502 21 0 0 0 chr1 120206303 120206324 -76989108 + AT_rich Low_complexity Low_complexity 1 21 0 2 1502 279 241 33 44 chr1 120206949 120207040 -76988392 + PB1D10 SINE Alu 17 106 -11 2 1502 25 75 0 0 chr1 120208235 120208288 -76987144 + AT_rich Low_complexity Low_complexity 1 53 0 2 1502 1310 91 43 5 chr1 120208292 120208480 -76986952 + B2_Mm2 SINE B2 1 195 0 2 1502 284 225 86 43 chr1 120208824 120208917 -76986515 + RSINE1 SINE B4 60 156 -9 2 1502 947 43 0 169 chr1 120209117 120209283 -76986149 - B1_Mus1 SINE Alu -10 138 1 2 1502 237 250 62 0 chr1 120209663 120209759 -76985673 + RMER10A LTR ERVL 327 428 -14 2 1502 492 286 35 7 chr1 120209747 120209888 -76985544 - ID_B1 SINE B4 -1 223 79 2 1502 394 300 20 73 chr1 120210167 120210229 -76985203 - RSINE1 SINE B4 -4 161 106 2 1502 1685 21 0 0 chr1 120210229 120210417 -76985015 + B2_Mm1t SINE B2 2 189 -4 2 1502 394 300 20 73 chr1 120210417 120210505 -76984927 - RSINE1 SINE B4 -60 105 19 2 1502 685 172 14 36 chr1 120210580 120210719 -76984713 + B1_Mus2 SINE Alu 10 145 -2 2 1502 231 36 0 0 chr1 120210719 120210747 -76984685 + (TAA)n Simple_repeat Simple_repeat 2 29 0 2 1502 287 248 66 47 chr1 120210987 120211093 -76984339 + PB1D10 SINE Alu 1 108 -9 2 1502 449 304 9 0 chr1 120211389 120211504 -76983928 - ID_B1 SINE B4 -16 208 93 2 1502 22 0 0 0 chr1 120211639 120211661 -76983771 + AT_rich Low_complexity Low_complexity 1 22 0 2 1502 549 184 46 0 chr1 120211664 120211773 -76983659 + B1_Mus2 SINE Alu 28 141 -6 2 1502 336 291 28 50 chr1 120211788 120211929 -76983503 - B1F2 SINE Alu -8 141 4 2 1502 758 101 0 8 chr1 120211971 120212091 -76983341 - ORR1B2 LTR MaLR 0 367 249 2 1502 6940 128 82 26 chr1 120212339 120214400 -76981032 - Lx LINE L1 -5 6649 4421 2 1502 230 275 44 2 chr1 120214400 120214496 -76980936 - B4A SINE B4 -191 101 1 2 1502 356 275 9 52 chr1 120214658 120214773 -76980659 + L1MDa LINE L1 21 130 -6503 2 1502 456 281 9 0 chr1 120214828 120214942 -76980490 + PB1D7 SINE Alu 3 117 -3 2 1502 506 302 52 17 chr1 120214966 120215126 -76980306 + B3 SINE B2 2 168 -48 2 1502 240 35 0 0 chr1 120215126 120215155 -76980277 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1502 506 302 52 17 chr1 120215155 120215166 -76980266 + B3 SINE B2 169 179 -37 2 1502 645 238 21 0 chr1 120215294 120215437 -76979995 + B1_Mur2 SINE Alu 4 149 0 2 1502 247 260 39 13 chr1 120215487 120215565 -76979867 + ID4_ SINE ID 2 81 -2 2 1502 1733 193 24 42 chr1 120215570 120215795 -76979637 + ORR1D1 LTR MaLR 1 214 -160 2 1502 613 0 127 0 chr1 120215795 120215952 -76979480 + (CCTG)n Simple_repeat Simple_repeat 4 180 0 2 1502 1733 193 24 42 chr1 120215952 120216104 -76979328 + ORR1D1 LTR MaLR 215 371 -3 2 1502 642 227 46 51 chr1 120216145 120216340 -76979092 + ORR1D2 LTR MaLR 177 370 0 2 1502 1010 244 53 16 chr1 120216340 120216678 -76978754 + MTD LTR MaLR 44 419 0 2 1502 349 270 18 0 chr1 120216682 120216793 -76978639 - RSINE1 SINE B4 -45 120 8 2 1502 525 253 115 14 chr1 120217084 120217232 -76978200 + RSINE1 SINE B4 3 165 0 2 1502 461 197 128 0 chr1 120217429 120217546 -76977886 + B3 SINE B2 85 216 0 2 1502 572 258 51 51 chr1 120217548 120217744 -76977688 + B3A SINE B2 1 196 -2 2 1502 434 155 23 45 chr1 120217766 120217854 -76977578 - RMER21B LTR ERV1 -445 397 312 2 1502 540 159 186 14 chr1 120217925 120218065 -76977367 - RMER21B LTR ERV1 -677 165 2 2 1502 625 211 107 56 chr1 120218093 120218289 -76977143 - ID_B1 SINE B4 -3 221 16 2 1502 264 289 145 0 chr1 120219091 120219174 -76976258 - ID_B1 SINE B4 -15 209 115 3 1502 298 258 0 0 chr1 120219665 120219727 -76975705 + PB1D9 SINE Alu 2 63 -57 3 1502 910 187 0 0 chr1 120219754 120219904 -76975528 + B1_Mur4 SINE Alu 1 150 0 3 1502 462 205 222 0 chr1 120219975 120220092 -76975340 + B1_Mur1 SINE Alu 2 144 -5 3 1502 619 224 52 0 chr1 120220420 120220554 -76974878 + B1_Mur2 SINE Alu 1 141 -8 3 1502 444 202 104 19 chr1 120220610 120220716 -76974716 + PB1D9 SINE Alu 1 115 -5 3 1502 261 259 232 36 chr1 120220763 120220875 -76974557 + B4 SINE B4 77 210 -82 3 1502 528 271 35 7 chr1 120222264 120222409 -76973023 - B1_Mur2 SINE Alu 0 149 1 3 1502 869 186 130 21 chr1 120222417 120222609 -76972823 - B3 SINE B2 -3 213 1 3 1502 549 149 46 9 chr1 120222611 120222719 -76972713 - URR1B DNA MER1_type -10 215 104 3 1502 262 308 55 0 chr1 120222855 120222946 -76972486 - RSINE1 SINE B4 -69 96 1 3 1502 186 71 0 0 chr1 120223192 120223220 -76972212 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1502 1307 20 0 0 chr1 120223220 120223367 -76972065 - B1_Mm SINE Alu 0 147 1 3 1502 404 211 105 0 chr1 120223713 120223808 -76971624 - PB1 SINE Alu 0 127 23 3 1502 475 205 25 41 chr1 120224445 120224567 -76970865 + PB1D9 SINE Alu 1 120 0 3 1502 572 248 152 15 chr1 120225353 120225550 -76969882 + ID_B1 SINE B4 1 224 0 3 1502 203 167 0 27 chr1 120225550 120225587 -76969845 + GA-rich Low_complexity Low_complexity 2 37 0 3 1502 305 342 9 9 chr1 120225700 120225815 -76969617 + RSINE1 SINE B4 49 163 -2 3 1502 243 347 42 8 chr1 120226400 120226519 -76968913 - B1F2 SINE Alu -7 142 20 3 1502 368 247 48 46 chr1 120226568 120226676 -76968756 - B1F2 SINE Alu -11 109 1 3 1502 453 322 84 0 chr1 120226676 120226745 -76968687 - ID SINE ID -143 81 1 3 1502 872 218 23 6 chr1 120226776 120226947 -76968485 - B3 SINE B2 -42 174 1 3 1502 294 337 0 0 chr1 120226960 120227043 -76968389 - PB1D10 SINE Alu 0 117 35 3 1502 389 258 114 24 chr1 120227305 120227428 -76968004 + RSINE1 SINE B4 30 163 -2 3 1502 1318 107 37 0 chr1 120227738 120227925 -76967507 - B2_Mm2 SINE B2 0 195 2 3 1502 407 298 122 70 chr1 120227958 120228171 -76967261 + B4A SINE B4 6 229 -63 3 1502 515 165 110 0 chr1 120228178 120228269 -76967163 - B3 SINE B2 -115 101 1 3 1502 373 184 224 5 chr1 120230282 120230390 -76965042 - B1_Mus1 SINE Alu -13 135 23 3 1502 1450 65 5 11 chr1 120230410 120230597 -76964835 - B2_Mm1a SINE B2 -7 186 1 3 1502 246 238 198 12 chr1 120231020 120231101 -76964331 - B4A SINE B4 -187 105 10 3 1502 394 243 0 0 chr1 120231361 120231435 -76963997 + B3 SINE B2 50 123 -93 3 1502 308 290 80 45 chr1 120231860 120231972 -76963460 + PB1D10 SINE Alu 2 117 0 3 1502 213 293 98 0 chr1 120231979 120232061 -76963371 + ID_B1 SINE B4 5 94 -130 3 1502 796 162 289 21 chr1 120232203 120232442 -76962990 + MTC LTR MaLR 119 421 0 3 1502 513 46 15 0 chr1 120232463 120232528 -76962904 + B1_Mm SINE Alu 66 131 -16 3 1502 204 67 0 0 chr1 120232548 120232578 -76962854 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1502 758 264 18 26 chr1 120232685 120232911 -76962521 - ID_B1 SINE B4 0 224 1 3 1502 440 300 120 14 chr1 120233027 120233169 -76962263 - B3A SINE B2 -41 157 1 3 1502 261 163 0 0 chr1 120233277 120233326 -76962106 + T-rich Low_complexity Low_complexity 1 49 0 3 1502 270 303 53 0 chr1 120233329 120233405 -76962027 - PB1D10 SINE Alu -37 80 1 3 1502 458 195 29 10 chr1 120233539 120233637 -76961795 - B1_Mur2 SINE Alu -13 136 3 3 1502 921 96 72 14 chr1 120233651 120233789 -76961643 - B1_Mur3 SINE Alu 0 149 4 3 1502 1166 62 0 0 chr1 120233858 120234004 -76961428 - B1_Mus2 SINE Alu 0 147 2 3 1502 938 247 5 10 chr1 120234044 120234236 -76961196 + ID_B1 SINE B4 8 198 -26 3 1502 245 316 28 84 chr1 120234249 120234278 -76961154 + MT2B LTR ERVL 139 161 -440 3 1502 566 200 6 177 chr1 120234278 120234436 -76960996 + B1_Mur1 SINE Alu 4 134 -15 3 1502 665 243 0 34 chr1 120234440 120234589 -76960843 + B3 SINE B2 7 150 -66 3 1502 284 53 0 0 chr1 120235096 120235134 -76960298 - B2_Mm2 SINE B2 -94 101 64 3 1502 1287 77 0 71 chr1 120235172 120235368 -76960064 - B2_Mm2 SINE B2 -13 182 1 3 1502 2190 100 35 0 chr1 120235416 120235727 -76959705 + ORR1A2 LTR MaLR 6 327 0 3 1502 1584 176 108 19 chr1 120235791 120236116 -76959316 + ORR1B1 LTR MaLR 33 386 -8 3 1502 410 250 18 44 chr1 120236121 120236234 -76959198 - ID_B1 SINE B4 -33 191 82 3 1502 318 159 30 45 chr1 120236232 120236298 -76959134 - PB1D9 SINE Alu -2 118 54 3 1502 362 286 143 0 chr1 120236329 120236441 -76958991 + RSINE1 SINE B4 32 159 -6 3 1502 1053 221 5 5 chr1 120236461 120236675 -76958757 - B3 SINE B2 0 216 3 3 1502 1115 69 14 0 chr1 120236744 120236889 -76958543 + B1_Mus1 SINE Alu 2 148 0 3 1502 519 17 0 0 chr1 120236895 120236955 -76958477 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 3 1502 198 0 0 0 chr1 120236959 120236981 -76958451 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1502 1173 113 0 0 chr1 120236992 120237169 -76958263 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 3 1502 537 58 0 0 chr1 120237306 120237375 -76958057 + (GTTTG)n Simple_repeat Simple_repeat 2 70 0 3 1502 373 198 154 0 chr1 120237375 120237466 -76957966 - B1_Mur1 SINE Alu -10 139 35 3 1502 578 264 7 54 chr1 120237506 120237654 -76957778 - ID_B1 SINE B4 0 224 84 3 1502 650 13 13 0 chr1 120237680 120237759 -76957673 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 1502 1386 64 26 36 chr1 120238053 120238217 -76957215 + B2_Mm1t SINE B2 1 165 -28 3 1502 1658 32 0 0 chr1 120238217 120238404 -76957028 - B2_Mm1a SINE B2 -5 188 2 3 1502 1386 64 26 36 chr1 120238404 120238434 -76956998 + B2_Mm1t SINE B2 166 193 0 3 1502 646 192 46 8 chr1 120238450 120238581 -76956851 + B1_Mur4 SINE Alu 2 137 -13 3 1502 230 200 80 0 chr1 120239246 120239296 -76956136 - B4A SINE B4 -14 278 225 3 1502 378 0 0 0 chr1 120239296 120239338 -76956094 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1502 408 296 40 81 chr1 120239355 120239528 -76955904 - B4A SINE B4 -49 243 78 3 1502 1373 208 40 106 chr1 120239538 120239963 -76955469 - RMER10B LTR ERVL -1 397 1 3 1502 688 318 79 19 chr1 120240776 120241042 -76954390 + B4A SINE B4 7 288 -4 3 1502 384 243 25 101 chr1 120241080 120241199 -76954233 - RMER10B LTR ERVL -15 383 274 3 1502 1341 210 43 22 chr1 120241243 120241613 -76953819 + RMER17C LTR ERVK 1 378 -32 3 1502 1282 117 58 40 chr1 120241847 120241946 -76953486 + RLTR33 LTR ERVK 107 210 -468 3 1502 3050 69 18 0 chr1 120241946 120242337 -76953095 - MTB LTR MaLR -2 398 1 3 1502 1368 211 73 35 chr1 120242337 120242747 -76952685 + RLTR33 LTR ERVK 211 678 0 3 1502 348 250 14 0 chr1 120242747 120242817 -76952615 + ID_B1 SINE B4 93 163 -61 3 1502 1208 144 5 5 chr1 120242907 120243102 -76952330 + B2_Mm2 SINE B2 1 195 0 3 1502 382 224 0 12 chr1 120243113 120243199 -76952233 + B4A SINE B4 85 169 -123 3 1502 583 161 0 0 chr1 120243123 120243216 -76952216 + PB1D9 SINE Alu 9 101 -19 3 1502 4334 40 8 2 chr1 120243216 120243736 -76951696 + L1Md_F3 LINE L1 6062 6584 0 3 1502 1226 54 0 0 chr1 120243742 120243889 -76951543 + B1_Mm SINE Alu 1 147 0 3 1502 233 125 18 0 chr1 120243890 120243946 -76951486 + (CAAAAA)n Simple_repeat Simple_repeat 1 57 0 3 1502 917 270 52 35 chr1 120244070 120244133 -76951299 - MT2A LTR ERVL -239 294 233 3 1502 186 103 0 0 chr1 120244133 120244162 -76951270 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 1502 917 270 52 35 chr1 120244162 120244386 -76951046 - MT2A LTR ERVL -301 232 2 3 1502 433 157 23 35 chr1 120244386 120244448 -76950984 + ID_B1 SINE B4 164 224 0 3 1502 1608 115 20 133 chr1 120244644 120244996 -76950436 - ORR1A4 LTR MaLR -17 312 1 3 1502 663 194 23 30 chr1 120245468 120245601 -76949831 + B3 SINE B2 73 204 -12 3 1502 1130 77 155 0 chr1 120245715 120245883 -76949549 + B2_Mm2 SINE B2 2 195 0 3 1502 1153 61 0 20 chr1 120245894 120246045 -76949387 + B1_Mus1 SINE Alu 1 148 0 3 1502 621 240 8 0 chr1 120246431 120246556 -76948876 + RSINE1 SINE B4 2 127 -38 3 1502 317 281 93 85 chr1 120246658 120246912 -76948520 - RLTR20B3 LTR ERVK -276 258 17 3 1502 1353 80 42 16 chr1 120246914 120247104 -76948328 + B2_Mm2 SINE B2 1 195 0 3 1502 357 24 0 0 chr1 120247104 120247146 -76948286 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 3 1502 197 0 0 67 chr1 120247201 120247231 -76948201 + (TATG)n Simple_repeat Simple_repeat 3 30 0 3 1502 282 82 508 10 chr1 120247368 120247466 -76947966 + B2_Mm2 SINE B2 47 193 -2 3 1502 452 278 44 22 chr1 120247470 120247606 -76947826 + B3 SINE B2 74 212 -4 3 1502 806 223 30 18 chr1 120247611 120247780 -76947652 - B3 SINE B2 -44 172 2 3 1502 367 229 143 8 chr1 120247807 120247926 -76947506 - B1_Mur1 SINE Alu -13 136 2 3 1502 225 108 0 0 chr1 120247926 120247963 -76947469 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 3 1502 1229 41 7 0 chr1 120248115 120248261 -76947171 + B1_Mus1 SINE Alu 2 148 0 3 1502 195 114 0 0 chr1 120248263 120248298 -76947134 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1502 310 295 0 69 chr1 120248353 120248455 -76946977 + L1MC4a LINE L1 6585 6679 -1203 3 1502 279 0 0 0 chr1 120248455 120248486 -76946946 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 1502 417 248 265 0 chr1 120248588 120248705 -76946727 + B1_Mur1 SINE Alu 1 148 -1 4 1502 408 258 43 0 chr1 120248909 120249002 -76946430 - RMER15-int LTR ERVL -310 4689 4593 4 1502 322 324 118 33 chr1 120249174 120249385 -76946047 - RMER15-int LTR ERVL -2718 2281 2053 4 1502 310 176 136 34 chr1 120249391 120249441 -76945991 - HAL1-3A_ME LINE L1 -786 2072 2014 4 1502 234 0 0 0 chr1 120249441 120249467 -76945965 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1502 310 176 136 34 chr1 120249467 120249504 -76945928 - HAL1-3A_ME LINE L1 -845 2013 1977 4 1502 210 91 0 0 chr1 120249505 120249538 -76945894 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1502 320 211 18 0 chr1 120249548 120249605 -76945827 - B1F SINE Alu -16 133 76 4 1502 1239 35 7 0 chr1 120249605 120249750 -76945682 + B1_Mus2 SINE Alu 2 147 0 4 1502 243 0 0 0 chr1 120249778 120249805 -76945627 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1502 432 189 0 26 chr1 120249818 120249894 -76945538 - PB1D9 SINE Alu -32 88 15 4 1502 21 36 0 0 chr1 120249906 120249934 -76945498 + AT_rich Low_complexity Low_complexity 1 28 0 4 1502 774 230 0 44 chr1 120249943 120249966 -76945466 + RSINE1 SINE B4 4 24 -141 4 1502 2022 109 48 60 chr1 120249966 120250299 -76945133 - ORR1A4 LTR MaLR 0 329 1 4 1502 774 230 0 44 chr1 120250299 120250434 -76944998 + RSINE1 SINE B4 25 155 -10 4 1502 23 0 0 0 chr1 120250489 120250512 -76944920 + AT_rich Low_complexity Low_complexity 1 23 0 4 1502 409 243 206 0 chr1 120250512 120250648 -76944784 - Lx2B LINE L1 -12 6988 6825 4 1502 1221 61 0 0 chr1 120250860 120251007 -76944425 - B1_Mus2 SINE Alu 0 147 1 4 1502 890 281 75 57 chr1 120251205 120251695 -76943737 - RMER15-int LTR ERVL -3971 1028 530 4 1502 359 250 126 55 chr1 120251706 120251833 -76943599 - B1F SINE Alu -1 148 13 4 1502 1510 68 16 0 chr1 120251857 120252049 -76943383 - B2_Mm2 SINE B2 0 195 1 4 1502 396 0 0 0 chr1 120252116 120252160 -76943272 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1502 3658 155 89 33 chr1 120252290 120253011 -76942421 + RLTR33 LTR ERVK 1 670 -8 4 1502 7781 161 62 6 chr1 120253224 120254653 -76940779 + ORR1B2-int LTR MaLR 1 1509 0 4 1502 2282 146 8 29 chr1 120254653 120255028 -76940404 + ORR1B2 LTR MaLR 1 367 0 4 1502 291 312 0 0 chr1 120255127 120255204 -76940228 - Lx8 LINE L1 -351 7122 7046 4 1502 397 291 0 43 chr1 120255243 120255358 -76940074 + PB1D7 SINE Alu 5 114 -6 4 1502 908 221 9 42 chr1 120255358 120255571 -76939861 + ID_B1 SINE B4 2 207 -17 4 1502 234 0 0 0 chr1 120255575 120255601 -76939831 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1502 414 108 0 0 chr1 120255601 120255675 -76939757 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1502 759 293 67 0 chr1 120256616 120256824 -76938608 + B4A SINE B4 5 226 -66 4 1502 404 382 0 22 chr1 120256820 120256959 -76938473 + RSINE1 SINE B4 13 148 -17 4 1502 1152 82 0 14 chr1 120257023 120257171 -76938261 + B1_Mus2 SINE Alu 2 147 0 4 1502 207 0 0 0 chr1 120257188 120257211 -76938221 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1502 274 86 0 0 chr1 120257242 120257277 -76938155 + PB1D9 SINE Alu 1 35 -85 4 1502 315 0 0 0 chr1 120257286 120257321 -76938111 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 4 1502 681 13 0 0 chr1 120257321 120257398 -76938034 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 4 1502 907 241 21 0 chr1 120257449 120257636 -76937796 - B3 SINE B2 -24 192 2 4 1502 1394 65 22 5 chr1 120257675 120257860 -76937572 - B2_Mm2 SINE B2 -6 189 2 4 1502 367 188 14 14 chr1 120257926 120257996 -76937436 - HAL1-3A_ME LINE L1 -813 2045 1976 4 1502 516 185 26 21 chr1 120257996 120258237 -76937195 + (TATG)n Simple_repeat Simple_repeat 1 242 0 4 1502 745 249 66 0 chr1 120258269 120258466 -76936966 - Lx8 LINE L1 -384 7089 6880 4 1502 891 271 6 0 chr1 120258519 120258700 -76936732 - B3 SINE B2 -34 182 1 4 1502 312 143 0 0 chr1 120258708 120258778 -76936654 + (TTTTTG)n Simple_repeat Simple_repeat 1 70 0 4 1502 717 57 157 189 chr1 120258779 120258932 -76936500 - B1_Mus1 SINE Alu 0 148 1 4 1502 312 216 156 49 chr1 120258939 120259061 -76936371 - Lx8 LINE L1 -209 7264 7130 4 1502 287 188 29 19 chr1 120259440 120259543 -76935889 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 4 1502 308 113 19 19 chr1 120259582 120259636 -76935796 - B2_Mm2 SINE B2 -94 101 48 4 1502 1281 102 11 0 chr1 120259707 120259883 -76935549 - B2_Mm1t SINE B2 -14 179 2 4 1502 26 0 0 0 chr1 120259892 120259918 -76935514 + AT_rich Low_complexity Low_complexity 1 26 0 4 1502 289 299 46 0 chr1 120260020 120260107 -76935325 - B3A SINE B2 -1 197 107 4 1502 2853 107 43 7 chr1 120260107 120260522 -76934910 - RLTR23 LTR ERV1 0 430 1 4 1502 1417 308 24 16 chr1 120260820 120261312 -76934120 - MuRRS4-int LTR ERV1 -1040 4023 3528 4 1502 326 324 14 14 chr1 120261691 120261838 -76933594 - MMERGLN-int LTR ERV1 -3134 4422 4165 4 1502 257 328 68 17 chr1 120261837 120262014 -76933418 - MMERGLN-int LTR ERV1 -3401 4200 4015 4 1502 1035 331 12 24 chr1 120262103 120262540 -76932892 - MuRRS4-int LTR ERV1 -3657 3899 3528 4 1502 1273 20 0 0 chr1 120262546 120262692 -76932740 + B1_Mm SINE Alu 2 147 0 4 1502 360 288 0 0 chr1 120262716 120262796 -76932636 - RSINE1 SINE B4 -74 91 12 4 1502 323 288 3 117 chr1 120262809 120262853 -76932579 - ID_B1 SINE B4 -195 97 58 4 1502 1407 75 5 5 chr1 120262853 120263040 -76932392 - B2_Mm1t SINE B2 -5 188 2 4 1502 323 284 0 120 chr1 120263040 120263102 -76932330 - ID SINE ID -167 57 2 4 1502 218 361 62 43 chr1 120263356 120263567 -76931865 - L2a LINE L2 -3 3423 3209 4 1502 232 265 0 0 chr1 120263721 120263770 -76931662 + B4 SINE B4 40 88 -204 4 1502 402 286 54 23 chr1 120263811 120263940 -76931492 + RSINE1 SINE B4 2 134 -31 4 1502 4269 98 27 0 chr1 120263983 120264566 -76930866 + MT2B LTR ERVL 1 599 -2 4 1502 770 132 125 51 chr1 120264601 120264638 -76930794 - B2_Mm2 SINE B2 -5 190 157 4 1502 189 0 0 0 chr1 120264638 120264659 -76930773 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4 1502 770 132 125 51 chr1 120264659 120264797 -76930635 - B2_Mm2 SINE B2 -39 156 2 4 1502 327 294 161 31 chr1 120264870 120265000 -76930432 + B1F SINE Alu 1 147 -2 4 1502 721 220 94 5 chr1 120265006 120265198 -76930234 + ID_B1 SINE B4 2 210 -14 4 1502 520 37 24 24 chr1 120265218 120265301 -76930131 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 4 1502 440 281 43 7 chr1 120265331 120265471 -76929961 - ID_B1 SINE B4 -1 223 79 4 1502 404 315 97 78 chr1 120265599 120265971 -76929461 - MLT1B LTR MaLR 0 390 12 4 1502 723 244 53 36 chr1 120266045 120266270 -76929162 + B4A SINE B4 2 230 -62 4 1502 541 214 27 103 chr1 120266274 120266420 -76929012 + B1_Mur2 SINE Alu 6 140 -9 4 1502 234 0 0 0 chr1 120266505 120266531 -76928901 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1502 311 352 0 53 chr1 120266546 120266660 -76928772 - L1ME3A LINE L1 -110 6063 5956 4 1502 456 335 78 46 chr1 120266698 120266966 -76928466 - MER77 LTR ERVL -43 564 287 4 1502 1551 161 278 22 chr1 120266966 120267333 -76928099 - RMER6B LTR ERVK 0 461 1 4 1502 1186 35 0 0 chr1 120267343 120267485 -76927947 + B2_Mm2 SINE B2 1 142 -53 4 1502 306 305 67 22 chr1 120267578 120267712 -76927720 - L1M4 LINE L1 -1273 4873 4734 4 1502 447 295 92 29 chr1 120267773 120267834 -76927598 - L1M4 LINE L1 -1394 4752 4688 4 1502 714 185 53 8 chr1 120267834 120267965 -76927467 - B1_Mus1 SINE Alu -10 138 2 4 1502 447 295 92 29 chr1 120267965 120268139 -76927293 - L1M4 LINE L1 -1459 4687 4497 4 1502 1098 69 28 0 chr1 120268139 120268283 -76927149 - B1_Mus1 SINE Alu 0 148 1 4 1502 447 295 92 29 chr1 120268283 120268395 -76927037 - L1M4 LINE L1 -1650 4496 4382 4 1502 821 220 116 79 chr1 120268402 120268679 -76926753 + B4A SINE B4 1 287 -5 4 1502 886 194 249 42 chr1 120268927 120269239 -76926193 - MTD LTR MaLR -10 409 33 4 1502 1484 181 8 142 chr1 120269239 120269619 -76925813 - ORR1A4 LTR MaLR 0 329 1 4 1502 830 225 5 57 chr1 120269619 120269652 -76925780 - MTD LTR MaLR -387 32 1 4 1502 298 348 0 11 chr1 120270099 120270189 -76925243 + RMER15 LTR ERVL 372 460 -115 4 1502 1412 68 16 10 chr1 120270867 120271059 -76924373 - B2_Mm1t SINE B2 0 193 1 4 1502 4072 128 45 19 chr1 120271250 120271914 -76923518 - Lx4B LINE L1 0 7058 6378 4 1502 1278 71 0 4 chr1 120271914 120272174 -76923258 + (TTCC)n Simple_repeat Simple_repeat 1 258 0 4 1502 221 171 0 0 chr1 120272174 120272215 -76923217 + T-rich Low_complexity Low_complexity 1 41 0 4 1502 1212 42 14 0 chr1 120272215 120272359 -76923073 - B1_Mus1 SINE Alu 0 148 3 4 1502 2700 118 14 7 chr1 120272363 120272780 -76922652 - Lx4B LINE L1 -673 6385 5966 4 1502 1675 98 248 9 chr1 120273159 120273335 -76922097 + RMER17C LTR ERVK 1 249 -161 4 1502 504 0 0 0 chr1 120273335 120273391 -76922041 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1502 1675 98 248 9 chr1 120273391 120273545 -76921887 + RMER17C LTR ERVK 250 410 0 4 1502 333 261 112 63 chr1 120273560 120273703 -76921729 + RSINE1 SINE B4 1 150 -15 4 1502 272 222 48 0 chr1 120273942 120274005 -76921427 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 4 1502 668 57 19 19 chr1 120274046 120274153 -76921279 + Lx3A LINE L1 6862 6968 -13 4 1502 282 56 0 0 chr1 120274153 120274189 -76921243 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 4 1502 689 209 78 0 chr1 120274241 120274370 -76921062 - B1_Mur1 SINE Alu -10 139 1 4 1502 228 254 0 0 chr1 120274400 120274459 -76920973 + T-rich Low_complexity Low_complexity 1 59 0 4 1502 647 242 20 64 chr1 120274983 120275186 -76920246 - B3A SINE B2 -3 195 2 4 1502 1421 75 11 0 chr1 120275233 120275421 -76920011 + B2_Mm1a SINE B2 1 190 -3 4 1502 189 0 0 0 chr1 120275463 120275484 -76919948 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1502 553 274 23 30 chr1 120275580 120275712 -76919720 + MTE2a LTR MaLR 46 176 -203 4 1502 616 189 7 7 chr1 120275712 120275851 -76919581 + G-rich Low_complexity Low_complexity 5 143 0 4 1502 398 256 0 89 chr1 120275852 120275942 -76919490 - B1_Mur3 SINE Alu -66 83 2 4 1502 219 36 0 0 chr1 120276023 120276051 -76919381 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1502 1159 58 0 0 chr1 120276051 120276189 -76919243 - B1_Mm SINE Alu -9 138 1 4 1502 641 286 0 69 chr1 120276247 120276277 -76919155 - RSINE1 SINE B4 0 165 141 5 1502 300 111 0 0 chr1 120276277 120276322 -76919110 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1502 641 286 0 69 chr1 120276322 120276464 -76918968 - RSINE1 SINE B4 -25 140 5 5 1502 213 39 0 0 chr1 120276783 120276809 -76918623 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1502 537 270 56 0 chr1 120277623 120277749 -76917683 - RSINE1 SINE B4 -5 160 28 5 1502 822 154 31 0 chr1 120277797 120277927 -76917505 + B1_Mus2 SINE Alu 4 137 -10 5 1502 319 309 70 28 chr1 120277975 120278118 -76917314 + L1M4 LINE L1 5519 5667 -511 5 1502 441 193 124 35 chr1 120278119 120278232 -76917200 + B3 SINE B2 1 123 -93 5 1502 318 311 97 0 chr1 120278212 120278315 -76917117 - ID_B1 SINE B4 -27 197 85 5 1502 273 29 0 0 chr1 120278537 120278571 -76916861 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1502 1068 67 15 0 chr1 120278571 120278706 -76916726 - B1_Mus2 SINE Alu -10 137 1 5 1502 1902 159 50 55 chr1 120278889 120279007 -76916425 + MTD LTR MaLR 1 114 -305 5 1502 634 55 22 0 chr1 120279007 120279098 -76916334 + (TTTCC)n Simple_repeat Simple_repeat 3 95 0 5 1502 1902 159 50 55 chr1 120279098 120279378 -76916054 + MTD LTR MaLR 115 397 -22 5 1502 441 149 76 23 chr1 120279378 120279505 -76915927 - ORR1A4 LTR MaLR -215 179 1 5 1502 661 179 1 57 chr1 120279505 120279600 -76915832 - ORR1C2 LTR MaLR -46 338 253 5 1502 426 250 33 16 chr1 120279600 120279722 -76915710 + B1_Mus2 SINE Alu 4 127 -20 5 1502 922 175 48 48 chr1 120279735 120279945 -76915487 - ORR1C2 LTR MaLR -159 225 16 5 1502 786 173 14 0 chr1 120279957 120280096 -76915336 - B1_Mur3 SINE Alu 0 149 9 5 1502 1090 251 52 69 chr1 120280135 120280797 -76914635 + MTC-int LTR MaLR 87 928 -330 5 1502 489 126 11 11 chr1 120280806 120280894 -76914538 + MTD LTR MaLR 330 417 -2 5 1502 360 221 140 51 chr1 120280941 120281098 -76914334 - MTC-int LTR MaLR -51 1207 1037 5 1502 487 280 8 16 chr1 120281128 120281255 -76914177 + B3A SINE B2 63 188 -10 5 1502 218 189 0 0 chr1 120281281 120281318 -76914114 + B1_Mur4 SINE Alu 1 37 -113 5 1502 292 28 0 0 chr1 120281321 120281357 -76914075 + L1_Mur3 LINE L1 4705 4740 -1140 5 1502 850 161 216 11 chr1 120281358 120281534 -76913898 + B3 SINE B2 1 212 -4 5 1502 26 0 0 0 chr1 120281536 120281562 -76913870 + AT_rich Low_complexity Low_complexity 1 26 0 5 1502 6461 134 40 50 chr1 120281562 120281708 -76913724 + Lx5 LINE L1 4724 4834 -1043 5 1502 276 30 0 0 chr1 120281708 120281741 -76913691 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 1502 6461 134 40 50 chr1 120281741 120282757 -76912675 + Lx5 LINE L1 4835 5875 -2 5 1502 1240 162 231 53 chr1 120282757 120283095 -76912337 + RMER10B LTR ERVL 1 398 0 5 1502 2121 134 47 6 chr1 120283095 120283163 -76912269 + Lx5 LINE L1 5877 5944 -1106 5 1502 576 143 17 26 chr1 120283257 120283372 -76912060 - Lx5 LINE L1 -1001 6049 5936 5 1502 225 279 49 0 chr1 120283376 120283437 -76911995 + ID4 SINE ID 14 77 -6 5 1502 180 111 0 0 chr1 120283814 120283841 -76911591 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1502 255 241 94 71 chr1 120284038 120284123 -76911309 - RSINE1 SINE B4 -68 97 11 5 1502 585 285 112 50 chr1 120284211 120284343 -76911089 + L1MB2 LINE L1 5778 5898 -273 5 1502 1471 69 21 0 chr1 120284343 120284532 -76910900 + B2_Mm2 SINE B2 2 194 -1 5 1502 585 285 112 50 chr1 120284532 120284720 -76910712 + L1MB2 LINE L1 5899 6118 -53 5 1502 189 74 0 0 chr1 120285979 120286006 -76909426 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1502 561 296 105 12 chr1 120287548 120287774 -76907658 + MTD LTR MaLR 1 216 -163 5 1502 207 0 0 0 chr1 120287779 120287802 -76907630 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1502 680 208 120 16 chr1 120288598 120288789 -76906643 + MTD LTR MaLR 197 407 -12 5 1502 322 307 0 0 chr1 120288836 120288911 -76906521 - ID4_ SINE ID -1 82 8 5 1502 381 211 124 83 chr1 120288964 120289109 -76906323 - RSINE1 SINE B4 -4 161 11 5 1502 297 0 0 0 chr1 120289144 120289177 -76906255 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1502 375 274 156 31 chr1 120289448 120289576 -76905856 - RSINE1 SINE B4 -7 158 15 5 1502 1403 90 5 0 chr1 120289576 120289765 -76905667 - B2_Mm1a SINE B2 -3 190 1 5 1502 247 329 13 0 chr1 120290123 120290199 -76905233 + (CGTG)n Simple_repeat Simple_repeat 1 77 0 5 1502 1080 178 24 24 chr1 120290557 120290770 -76904662 + B3 SINE B2 1 213 -3 5 1502 821 230 14 108 chr1 120291317 120291595 -76903837 - B4A SINE B4 -40 252 1 5 1502 269 109 22 0 chr1 120291608 120291654 -76903778 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 5 1502 390 42 0 0 chr1 120291662 120291710 -76903722 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1502 571 229 14 35 chr1 120291715 120291860 -76903572 - RSINE1 SINE B4 -21 144 3 5 1502 297 0 0 0 chr1 120292023 120292056 -76903376 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1502 1075 99 7 0 chr1 120292059 120292201 -76903231 - B1_Mus1 SINE Alu -5 143 1 5 1502 1091 273 15 0 chr1 120292696 120292967 -76902465 - B4 SINE B4 -13 279 5 5 1502 288 0 0 0 chr1 120293003 120293035 -76902397 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1502 536 216 105 63 chr1 120293036 120293179 -76902253 - RSINE1 SINE B4 -15 150 2 5 1502 1168 61 7 0 chr1 120293588 120293735 -76901697 + B1_Mus1 SINE Alu 1 148 0 5 1502 246 38 73 36 chr1 120293754 120293809 -76901623 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 5 1502 247 204 21 21 chr1 120293812 120293861 -76901571 + A-rich Low_complexity Low_complexity 2 49 0 5 1502 846 171 7 14 chr1 120293861 120294009 -76901423 + B1_Mur3 SINE Alu 3 149 0 5 1502 247 204 21 21 chr1 120294009 120294054 -76901378 + A-rich Low_complexity Low_complexity 50 96 0 5 1502 650 225 115 21 chr1 120294571 120294762 -76900670 - ID_B1 SINE B4 -7 217 9 5 1502 484 294 6 56 chr1 120294841 120295003 -76900429 - RSINE1 SINE B4 -1 164 11 5 1502 461 326 15 0 chr1 120295005 120295137 -76900295 - RSINE1 SINE B4 -18 147 14 5 1502 231 271 11 23 chr1 120295326 120295413 -76900019 + MER5A DNA MER1_type 99 184 -5 5 1502 229 170 38 0 chr1 120295695 120295748 -76899684 - ID_B1 SINE B4 -3 221 167 5 1502 349 299 170 6 chr1 120295826 120295991 -76899441 - ID_B1 SINE B4 -31 193 2 5 1502 585 194 19 0 chr1 120296193 120296301 -76899131 - PB1D9 SINE Alu -10 110 1 5 1502 876 241 83 21 chr1 120296525 120296813 -76898619 - L1M4 LINE L1 -598 5576 5271 5 1502 274 205 71 64 chr1 120296820 120296840 -76898592 - L1M4 LINE L1 -810 5336 5318 5 1502 484 237 47 106 chr1 120296840 120297010 -76898422 - RSINE1 SINE B4 -4 161 2 5 1502 275 205 71 64 chr1 120297010 120297130 -76898302 - L1M4 LINE L1 -829 5317 5192 5 1502 705 225 78 24 chr1 120297140 120297345 -76898087 - B3 SINE B2 0 216 1 5 1502 270 0 0 0 chr1 120297490 120297520 -76897912 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1502 189 0 0 0 chr1 120297520 120297541 -76897891 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1502 224 149 21 0 chr1 120297557 120297604 -76897828 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 1502 1188 41 7 0 chr1 120297607 120297753 -76897679 - B1_Mus2 SINE Alu 0 147 1 5 1502 283 256 23 11 chr1 120297835 120297922 -76897510 - L1M4 LINE L1 -1151 4995 4908 5 1502 234 0 0 0 chr1 120298015 120298041 -76897391 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1502 1012 105 7 0 chr1 120298060 120298203 -76897229 - B1_Mus1 SINE Alu 0 148 5 5 1502 351 243 176 53 chr1 120298373 120298560 -76896872 - MTE2a LTR MaLR -9 370 161 5 1502 728 182 0 8 chr1 120298629 120298762 -76896670 - RSINE1 SINE B4 -23 142 11 5 1502 460 325 76 12 chr1 120298758 120298929 -76896503 - MTE2a LTR MaLR -197 182 1 5 1502 426 238 69 0 chr1 120298944 120299045 -76896387 + PB1D9 SINE Alu 6 113 -7 5 1502 1101 62 21 0 chr1 120299559 120299704 -76895728 - B1_Mus1 SINE Alu 0 148 1 5 1502 456 279 17 35 chr1 120299873 120299897 -76895535 + B4A SINE B4 66 87 -205 5 1502 288 306 45 36 chr1 120299897 120300009 -76895423 + PB1D9 SINE Alu 1 113 -7 5 1502 296 127 18 0 chr1 120300024 120300079 -76895353 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 5 1502 401 280 66 53 chr1 120300085 120300236 -76895196 + RSINE1 SINE B4 3 155 -10 5 1502 1394 84 5 31 chr1 120300974 120301170 -76894262 + B2_Mm1a SINE B2 2 192 -1 5 1502 718 200 29 46 chr1 120301185 120301358 -76894074 + B2_Mm2 SINE B2 7 176 -19 5 1502 352 268 61 38 chr1 120301358 120301376 -76894056 + B4 SINE B4 70 90 -202 5 1502 643 217 7 53 chr1 120301376 120301527 -76893905 + B1_Mur3 SINE Alu 1 144 -5 5 1502 625 222 227 0 chr1 120301563 120301739 -76893693 + ID_B1 SINE B4 1 216 -8 5 1502 186 43 0 0 chr1 120301740 120301763 -76893669 + (CCA)n Simple_repeat Simple_repeat 3 25 0 5 1502 431 284 183 60 chr1 120301960 120302260 -76893172 + MLT1A LTR MaLR 38 374 0 5 1502 744 208 25 43 chr1 120302876 120303037 -76892395 - RSINE1 SINE B4 0 165 8 5 1502 269 185 0 15 chr1 120303189 120303255 -76892177 + (TATG)n Simple_repeat Simple_repeat 4 68 0 5 1502 564 231 131 0 chr1 120303470 120303600 -76891832 - B1_Mur2 SINE Alu 0 149 3 5 1502 314 269 0 0 chr1 120303634 120303727 -76891705 - Lx8 LINE L1 0 7473 7381 5 1502 297 0 0 0 chr1 120303743 120303776 -76891656 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1502 240 35 0 0 chr1 120303776 120303805 -76891627 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1502 588 216 75 44 chr1 120303805 120303965 -76891467 - B3A SINE B2 -31 167 3 5 1502 258 329 0 0 chr1 120304152 120304225 -76891207 - ID2 SINE ID -8 75 3 5 1502 678 237 14 7 chr1 120304241 120304381 -76891051 - B1_Mur1 SINE Alu -8 141 1 5 1502 999 160 193 0 chr1 120304971 120305152 -76890280 - B3 SINE B2 0 216 1 5 1502 1018 115 0 39 chr1 120305268 120305422 -76890010 + B1_Mus1 SINE Alu 1 148 0 5 1502 765 261 42 0 chr1 120305473 120305714 -76889718 + L1M4 LINE L1 2699 2949 -3197 6 1502 656 187 256 28 chr1 120306167 120306343 -76889089 + B3 SINE B2 1 216 0 6 1502 709 201 0 7 chr1 120306411 120306551 -76888881 + B1_Mus1 SINE Alu 8 146 -2 6 1502 279 0 0 0 chr1 120306553 120306584 -76888848 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 6 1502 1197 107 199 87 chr1 120306602 120306889 -76888543 - ORR1A4 LTR MaLR -10 319 1 6 1502 1513 113 56 8 chr1 120306899 120307148 -76888284 - RMER4A LTR ERVK -205 261 1 6 1502 254 235 173 8 chr1 120307172 120307305 -76888127 + L1M4 LINE L1 3611 3765 -2381 6 1502 1107 242 43 28 chr1 120307420 120307747 -76887685 - Lx8 LINE L1 -153 7320 6989 5 1502 724 283 200 30 chr1 120307837 120308364 -76887068 + L1M4 LINE L1 3780 4395 -1751 6 1502 1310 30 0 0 chr1 120308378 120308546 -76886886 + B2_Mm1a SINE B2 26 193 0 6 1502 1298 278 62 70 chr1 120308653 120309392 -76886040 + L1M4 LINE L1 4537 5269 -877 6 1502 426 208 82 36 chr1 120309435 120309545 -76885887 + B1_Mur3 SINE Alu 7 121 -28 6 1502 279 216 40 13 chr1 120309548 120309623 -76885809 + L1M4 LINE L1 5297 5373 -805 6 1502 209 33 33 0 chr1 120309689 120309719 -76885713 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1502 577 304 22 0 chr1 120309744 120309882 -76885550 - B3A SINE B2 -53 145 5 6 1502 386 268 32 8 chr1 120309918 120310042 -76885390 + L1M4 LINE L1 5381 5507 -733 6 1502 608 284 98 13 chr1 120310042 120310277 -76885155 + L1MB7 LINE L1 5686 5940 -244 6 1502 237 343 101 37 chr1 120310277 120310386 -76885046 + PB1D10 SINE Alu 1 116 -1 6 1502 279 0 0 0 chr1 120310388 120310419 -76885013 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1502 920 260 24 5 chr1 120310442 120310647 -76884785 + ID_B1 SINE B4 4 212 -12 6 1502 267 103 0 0 chr1 120310648 120310687 -76884745 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 6 1502 21 36 0 0 chr1 120311315 120311343 -76884089 + AT_rich Low_complexity Low_complexity 1 28 0 6 1502 559 255 85 0 chr1 120311350 120311491 -76883941 + RSINE1 SINE B4 2 154 -11 6 1502 22 0 0 0 chr1 120311631 120311653 -76883779 + AT_rich Low_complexity Low_complexity 1 22 0 6 1502 715 189 35 0 chr1 120311737 120311880 -76883552 - B3 SINE B2 -68 148 1 6 1502 375 228 0 12 chr1 120312112 120312192 -76883240 - B3A SINE B2 -119 79 1 6 1502 638 245 101 63 chr1 120312815 120313102 -76882330 + RMER13A LTR ERVK 95 392 -468 6 1502 26 30 0 0 chr1 120313639 120313672 -76881760 + AT_rich Low_complexity Low_complexity 1 33 0 6 1502 429 103 0 0 chr1 120313720 120313788 -76881644 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1502 256 258 45 101 chr1 120313803 120313967 -76881465 - B4 SINE B4 0 292 111 6 1502 33 25 0 0 chr1 120314395 120314435 -76880997 + AT_rich Low_complexity Low_complexity 1 40 0 6 1502 550 296 27 27 chr1 120314446 120314592 -76880840 - RSINE1 SINE B4 -17 148 3 6 1502 1396 63 20 45 chr1 120314595 120314793 -76880639 - B2_Mm2 SINE B2 -1 194 2 6 1502 653 264 72 25 chr1 120314844 120315120 -76880312 - B4A SINE B4 0 292 4 6 1502 234 91 0 0 chr1 120317411 120317444 -76877988 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1502 1125 95 0 0 chr1 120317444 120317591 -76877841 - B1_Mus2 SINE Alu 0 147 1 6 1502 985 207 34 5 chr1 120318236 120318445 -76876987 - B3 SINE B2 -1 215 1 6 1502 730 129 7 7 chr1 120318456 120318597 -76876835 + (TG)n Simple_repeat Simple_repeat 1 141 0 6 1502 473 286 69 72 chr1 120318598 120318888 -76876544 - B4 SINE B4 -1 291 3 6 1502 377 179 19 78 chr1 120319254 120319357 -76876075 - PB1D10 SINE Alu -5 112 16 6 1502 301 280 216 34 chr1 120320077 120320225 -76875207 - B4A SINE B4 -116 176 2 6 1502 257 234 19 122 chr1 120320261 120320368 -76875064 - PB1D7 SINE Alu -12 108 13 6 1502 225 0 0 0 chr1 120320441 120320466 -76874966 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 1502 458 248 9 9 chr1 120320478 120320584 -76874848 - RSINE1 SINE B4 -30 135 30 6 1502 1062 223 176 13 chr1 120320647 120320965 -76874467 + ORR1D2 LTR MaLR 1 370 0 6 1502 1220 238 86 27 chr1 120320965 120321292 -76874140 + MTD LTR MaLR 43 389 -30 6 1502 745 200 28 9 chr1 120321288 120321466 -76873966 - B3A SINE B2 -4 189 1 6 1502 753 225 132 5 chr1 120321978 120322197 -76873235 + B4A SINE B4 1 247 -45 6 1502 708 215 180 6 chr1 120322230 120322408 -76873024 - B3 SINE B2 -6 210 2 6 1502 532 242 8 23 chr1 120322460 120322591 -76872841 + RSINE1 SINE B4 1 129 -36 6 1502 270 0 0 0 chr1 120322630 120322660 -76872772 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1502 484 355 21 12 chr1 120322864 120323165 -76872267 + polypyrimidine Low_complexity Low_complexity 1 303 0 6 1502 275 193 82 29 chr1 120323165 120323336 -76872096 + CT-rich Low_complexity Low_complexity 1 180 0 6 1502 519 131 26 78 chr1 120323337 120323353 -76872079 - B1F2 SINE Alu -13 136 126 6 1502 3304 36 10 5 chr1 120323353 120323747 -76871685 - MTA_Mm LTR MaLR 0 396 1 6 1502 519 131 26 78 chr1 120323747 120323846 -76871586 - B1F2 SINE Alu -24 125 27 6 187 969 93 0 0 chr1 120323966 120324106 -76871326 + B1_Mus1 SINE Alu 9 148 0 6 1503 266 325 89 0 chr1 120324530 120324653 -76870779 + MER46C DNA MER2_type 204 337 -1 6 1503 303 328 0 32 chr1 120324716 120324842 -76870590 - MIR SINE MIR -89 173 52 6 1503 306 0 0 0 chr1 120325842 120325876 -76869556 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1503 249 322 42 25 chr1 120325993 120326111 -76869321 + MIRb SINE MIR 133 252 -16 6 1503 248 246 33 0 chr1 120326553 120326614 -76868818 - MIR SINE MIR -3 259 197 6 1503 1460 211 206 12 chr1 120326951 120327359 -76868073 - Lx8 LINE L1 -352 7121 6635 6 1503 282 56 0 0 chr1 120327495 120327531 -76867901 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1503 373 282 133 31 chr1 120327848 120327976 -76867456 - RSINE1 SINE B4 -13 152 12 6 1503 532 291 126 0 chr1 120327992 120328191 -76867241 - B4A SINE B4 -68 224 1 6 1503 373 297 72 0 chr1 120328559 120328670 -76866762 + RSINE1 SINE B4 45 163 -2 6 1503 276 53 0 0 chr1 120328675 120328713 -76866719 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1503 206 0 69 0 chr1 120329386 120329415 -76866017 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1503 2706 145 62 22 chr1 120329797 120330346 -76865086 - RMER15 LTR ERVL 0 575 5 6 1503 297 0 0 0 chr1 120330882 120330915 -76864517 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1503 297 161 54 0 chr1 120330927 120330983 -76864449 - B4A SINE B4 -18 274 216 6 1503 1141 76 0 0 chr1 120331027 120331172 -76864260 - B1_Mus2 SINE Alu -2 145 1 6 1503 1414 61 39 6 chr1 120331172 120331352 -76864080 - B2_Mm2 SINE B2 -8 187 1 6 1503 367 256 316 13 chr1 120331353 120331511 -76863921 - B4A SINE B4 -66 226 21 6 1503 441 0 0 0 chr1 120332400 120332449 -76862983 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1503 1341 93 5 54 chr1 120332809 120333014 -76862418 - B2_Mm2 SINE B2 0 195 1 6 1503 303 279 139 64 chr1 120333014 120333134 -76862298 + L1MB7 LINE L1 6026 6160 -24 6 1503 694 170 96 0 chr1 120333183 120333318 -76862114 - B1_Mur1 SINE Alu -1 148 1 6 1503 1012 211 53 106 chr1 120333318 120333678 -76861754 + MTE2a LTR MaLR 4 344 -35 6 1503 1689 160 132 6 chr1 120333686 120333967 -76861465 + RLTR30 LTR ERV1 12 319 -60 6 1503 854 211 0 0 chr1 120333967 120334114 -76861318 + B1_Mus2 SINE Alu 1 147 0 6 1503 1689 160 132 6 chr1 120334114 120334159 -76861273 + RLTR30 LTR ERV1 320 378 -1 6 1503 578 323 112 57 chr1 120334335 120334892 -76860540 - MLT2B3 LTR ERVL 0 556 3 6 1503 396 270 229 7 chr1 120335217 120335380 -76860052 + B3A SINE B2 2 189 -27 6 1503 591 284 89 35 chr1 120335390 120335649 -76859783 + B4A SINE B4 2 274 -18 6 1503 1154 82 0 0 chr1 120335729 120335876 -76859556 - B1_Mus1 SINE Alu 0 148 2 6 1503 2137 240 52 75 chr1 120336040 120336171 -76859261 - Lx9 LINE L1 0 7644 7508 6 1503 324 0 0 0 chr1 120336171 120336207 -76859225 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1503 2137 236 55 70 chr1 120336207 120336984 -76858448 - Lx9 LINE L1 -137 7507 6074 6 1503 830 212 0 0 chr1 120336987 120337133 -76858299 - B1_Mus2 SINE Alu -1 146 1 6 1503 368 231 37 37 chr1 120337144 120337252 -76858180 - ORR1E LTR MaLR -2 377 270 6 1503 558 261 78 35 chr1 120337371 120337570 -76857862 - ORR1E LTR MaLR -181 189 1 6 1503 958 211 74 0 chr1 120337604 120337794 -76857638 - B3 SINE B2 0 216 13 6 1503 216 200 33 16 chr1 120338053 120338114 -76857318 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1503 305 179 147 15 chr1 120338452 120338520 -76856912 + BC1_Mm scRNA scRNA 1 77 -75 6 1503 661 186 9 0 chr1 120338578 120338691 -76856741 - RSINE1 SINE B4 -51 114 1 6 1503 2210 88 34 16 chr1 120339826 120340149 -76855283 + ORR1A4 LTR MaLR 1 329 0 6 1503 1251 222 99 71 chr1 120340307 120340700 -76854732 - MTD LTR MaLR -4 415 12 6 1503 180 0 0 0 chr1 120340734 120340754 -76854678 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 6 1503 230 204 61 0 chr1 120340761 120340810 -76854622 + MTE2a LTR MaLR 1 52 -327 6 1503 399 172 0 30 chr1 120341331 120341397 -76854035 - RSINE1 SINE B4 -60 105 42 6 1503 565 236 110 27 chr1 120342732 120342924 -76852508 - RSINE1 SINE B4 -89 203 3 6 1503 363 320 0 29 chr1 120343369 120343472 -76851960 + Charlie12 DNA MER1_type 1 100 -2773 6 1503 351 0 0 0 chr1 120343472 120343511 -76851921 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1503 450 53 0 0 chr1 120343511 120343567 -76851865 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1503 535 238 196 39 chr1 120343567 120343628 -76851804 - RMER30 DNA MER1_type -100 102 13 6 1503 492 264 16 55 chr1 120343867 120343995 -76851437 - RSINE1 SINE B4 -2 163 41 6 1503 637 208 16 8 chr1 120344435 120344556 -76850876 + RSINE1 SINE B4 14 135 -30 6 1503 365 243 7 0 chr1 120344987 120345131 -76850301 + CT-rich Low_complexity Low_complexity 1 145 0 6 1503 232 281 18 0 chr1 120345826 120345883 -76849549 + AluF_3 SINE Alu 137 194 -117 7 1503 189 0 0 0 chr1 120346085 120346106 -76849326 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 7 1503 800 235 97 44 chr1 120346470 120346697 -76848735 + B4 SINE B4 1 239 -53 7 1503 1477 162 83 4 chr1 120346717 120346983 -76848449 - ORR1C1 LTR MaLR -91 287 1 7 1503 222 254 0 0 chr1 120347023 120347082 -76848350 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1503 180 0 0 0 chr1 120347137 120347157 -76848275 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1503 29 0 0 0 chr1 120347491 120347520 -76847912 + AT_rich Low_complexity Low_complexity 1 29 0 7 1503 594 266 6 115 chr1 120347526 120347709 -76847723 - RSINE1 SINE B4 0 165 3 7 1503 312 247 157 24 chr1 120348053 120348136 -76847296 + RSINE1 SINE B4 11 104 -61 7 1503 2796 187 117 32 chr1 120348289 120348613 -76846819 - RMER1B Other Other -12 1054 708 7 1503 1208 62 83 28 chr1 120348613 120348794 -76846638 + B2_Mm1t SINE B2 1 191 -2 7 1503 2796 187 117 32 chr1 120348794 120349100 -76846332 - RMER1B Other Other -359 707 370 7 1503 1594 254 56 56 chr1 120349101 120349581 -76845851 - RMER1B Other Other -541 525 46 7 1503 204 328 16 0 chr1 120350199 120350260 -76845172 - L2a LINE L2 -72 3354 3293 7 1503 526 325 83 48 chr1 120350568 120350965 -76844467 - L1MB8 LINE L1 -6 6172 5762 7 1503 737 220 107 43 chr1 120351411 120351644 -76843788 - B4A SINE B4 -44 248 1 7 1503 189 121 0 0 chr1 120352592 120352625 -76842807 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1503 744 261 93 31 chr1 120352653 120352704 -76842728 - B4A SINE B4 -18 274 229 7 1503 332 211 304 9 chr1 120352704 120352819 -76842613 - B1_Mur3 SINE Alu 0 149 1 7 1503 744 261 93 31 chr1 120352819 120353024 -76842408 - B4A SINE B4 -64 228 2 7 1503 837 312 118 12 chr1 120353945 120354276 -76841156 - Tigger7 DNA MER2_type -2117 374 9 7 1503 442 224 164 15 chr1 120354315 120354510 -76840922 - L1M3 LINE L1 -452 5737 5514 7 1503 270 95 0 0 chr1 120354521 120354563 -76840869 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 7 1503 961 211 176 14 chr1 120354871 120355160 -76840272 - L1MC3 LINE L1 -289 7496 7161 7 1503 243 146 0 0 chr1 120355200 120355255 -76840177 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1503 302 186 184 122 chr1 120355315 120355413 -76840019 + PB1D9 SINE Alu 12 115 -5 7 1503 297 276 71 10 chr1 120357540 120357639 -76837793 - B1F2 SINE Alu -24 125 21 7 1503 393 236 36 36 chr1 120357554 120357664 -76837768 - ID_B1 SINE B4 -35 189 80 7 1503 2196 145 50 25 chr1 120357953 120358350 -76837082 - MTB_Mm LTR MaLR 0 407 1 7 1503 244 164 32 16 chr1 120359188 120359250 -76836182 + CT-rich Low_complexity Low_complexity 3 65 0 7 1503 462 267 24 2 chr1 120359257 120359384 -76836048 - ID_B1 SINE B4 -13 211 88 7 1503 432 0 0 0 chr1 120359626 120359674 -76835758 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1503 342 115 0 0 chr1 120359674 120359735 -76835697 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1503 453 311 62 0 chr1 120360003 120360164 -76835268 - L1MD LINE L1 -568 5791 5621 7 1503 678 211 114 2 chr1 120360184 120360384 -76835048 - B3 SINE B2 0 216 1 7 1503 236 224 0 17 chr1 120360389 120360448 -76834984 - L1MD LINE L1 -635 5607 5550 7 1503 549 248 79 28 chr1 120360510 120360684 -76834748 + B3A SINE B2 3 187 -8 7 1503 237 172 203 17 chr1 120361310 120361369 -76834063 + B4 SINE B4 5 74 -218 7 1503 306 206 48 0 chr1 120361318 120361381 -76834051 + B2_Mm2 SINE B2 21 86 -109 7 1503 296 169 17 17 chr1 120361378 120361438 -76833994 + B3 SINE B2 152 211 -5 7 1503 402 261 97 0 chr1 120362549 120362683 -76832749 + B1F2 SINE Alu 2 148 -1 7 1503 819 262 29 5 chr1 120362687 120362894 -76832538 + B3 SINE B2 2 213 -3 7 1503 942 72 0 91 chr1 120363095 120363365 -76832067 + (TG)n Simple_repeat Simple_repeat 1 245 0 7 1503 1057 263 49 0 chr1 120363401 120363644 -76831788 - B4 SINE B4 -14 278 24 7 1503 977 197 84 59 chr1 120363889 120364126 -76831306 - ORR1D1 LTR MaLR -91 283 41 7 1503 501 226 86 9 chr1 120364642 120364758 -76830674 - RSINE1 SINE B4 -38 127 3 7 1503 35 54 0 0 chr1 120364758 120364814 -76830618 + AT_rich Low_complexity Low_complexity 1 56 0 7 1503 713 219 128 28 chr1 120364863 120365076 -76830356 - ORR1D1-int LTR MaLR -1479 313 83 7 1503 2090 133 124 27 chr1 120365237 120365608 -76829824 - MTB_Mm LTR MaLR 0 407 1 7 1503 260 289 84 19 chr1 120366505 120366660 -76828772 + MER117 DNA MER1_type 5 169 -28 7 1503 723 259 77 27 chr1 120367541 120367763 -76827669 - B4A SINE B4 -34 258 26 7 1503 1088 219 113 85 chr1 120367894 120368258 -76827174 + MTE2a LTR MaLR 3 376 -3 7 1503 198 0 0 0 chr1 120368319 120368341 -76827091 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1503 213 349 36 0 chr1 120368672 120368755 -76826677 + L2 LINE L2 2744 2829 -590 7 1503 1217 48 7 0 chr1 120369397 120369542 -76825890 + B1_Mus2 SINE Alu 2 147 0 7 1503 491 266 40 57 chr1 120369564 120369791 -76825641 - RLTR42-int LTR ERVK -4155 1367 1145 7 1503 355 297 11 0 chr1 120370408 120370499 -76824933 - B4A SINE B4 -199 93 2 7 1503 690 176 0 81 chr1 120370523 120370671 -76824761 + B1_Mur2 SINE Alu 2 137 -12 7 1503 207 0 0 0 chr1 120370673 120370696 -76824736 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1503 541 229 38 0 chr1 120370935 120371040 -76824392 - ID_B1 SINE B4 -25 199 91 7 1503 454 227 85 62 chr1 120371449 120371660 -76823772 + B3 SINE B2 1 216 0 7 1503 228 288 0 15 chr1 120371979 120372046 -76823386 + MLT1A1 LTR MaLR 63 128 -280 7 1503 260 302 153 47 chr1 120372073 120372243 -76823189 + ORR1E LTR MaLR 67 254 -105 7 1503 613 237 22 15 chr1 120372341 120372478 -76822954 + B1F SINE Alu 11 148 -1 7 1503 486 49 0 0 chr1 120372830 120372891 -76822541 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1503 21 57 0 0 chr1 120372904 120372939 -76822493 + AT_rich Low_complexity Low_complexity 1 35 0 7 1503 389 254 67 7 chr1 120373290 120373425 -76822007 - L1MD LINE L1 -1861 4285 4143 7 1503 714 271 42 16 chr1 120373543 120373734 -76821698 + B3 SINE B2 1 196 -20 7 1503 183 204 0 0 chr1 120373792 120373841 -76821591 + CT-rich Low_complexity Low_complexity 2 50 0 7 1503 378 242 144 94 chr1 120374081 120374282 -76821150 - L1MB7 LINE L1 -46 6138 5928 7 1503 755 167 33 8 chr1 120374387 120374508 -76820924 - B1_Mur2 SINE Alu -23 126 3 7 1503 436 232 77 111 chr1 120374508 120374599 -76820833 - MT2B LTR ERVL -440 161 78 7 1503 209 324 134 21 chr1 120374746 120374888 -76820544 + MIRb SINE MIR 73 230 -38 7 1503 2239 102 19 0 chr1 120375525 120375848 -76819584 + ORR1A4 LTR MaLR 1 329 0 7 1503 642 259 7 7 chr1 120376269 120376409 -76819023 - RSINE1 SINE B4 -23 142 3 7 1503 225 0 0 0 chr1 120376416 120376441 -76818991 + (CCTA)n Simple_repeat Simple_repeat 1 25 0 7 1503 733 171 70 0 chr1 120376445 120376574 -76818858 - B1_Mur4 SINE Alu -7 143 6 7 1503 393 305 58 58 chr1 120376574 120376619 -76818813 - B4 SINE B4 -73 219 46 7 1503 290 272 121 24 chr1 120376619 120376785 -76818647 - L1MB7 LINE L1 -854 5292 5111 7 1503 570 235 50 50 chr1 120379552 120379713 -76815719 - RSINE1 SINE B4 0 165 5 7 1503 287 306 63 16 chr1 120380996 120381122 -76814310 - Charlie18a DNA MER1_type -129 213 82 7 1503 889 260 20 7 chr1 120381140 120381352 -76814080 - B3A SINE B2 -5 211 1 7 1503 260 191 94 16 chr1 120381924 120381988 -76813444 + MLT2B5 LTR ERVL 123 191 -410 7 1503 349 332 187 15 chr1 120382149 120382556 -76812876 + L1MC3 LINE L1 7307 7783 -2 7 1503 30 27 0 0 chr1 120383055 120383092 -76812340 + AT_rich Low_complexity Low_complexity 1 37 0 7 1503 345 304 33 0 chr1 120383215 120383307 -76812125 + B4A SINE B4 7 101 -191 7 1503 800 240 181 71 chr1 120383333 120383670 -76811762 - ORR1D1 LTR MaLR 0 374 1 7 1503 212 288 0 55 chr1 120383785 120383840 -76811592 + ID SINE ID 2 53 -171 7 1503 317 333 111 0 chr1 120385470 120385587 -76809845 + RSINE1 SINE B4 1 130 -35 7 1503 399 259 101 22 chr1 120386052 120386190 -76809242 + RSINE1 SINE B4 12 160 -5 7 1503 221 300 146 24 chr1 120386951 120387074 -76808358 + L2b LINE L2 3235 3372 -3 7 1503 468 0 0 0 chr1 120387520 120387572 -76807860 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1503 468 0 0 0 chr1 120388905 120388957 -76806475 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1503 363 293 50 25 chr1 120388957 120389076 -76806356 - RSINE1 SINE B4 -41 124 3 7 1503 723 160 25 83 chr1 120389840 120389997 -76805435 + B1_Mur2 SINE Alu 2 149 0 7 1503 225 94 0 0 chr1 120390225 120390257 -76805175 + (TCC)n Simple_repeat Simple_repeat 3 34 0 7 1503 3131 282 81 23 chr1 120390294 120391310 -76804122 - Lx8 LINE L1 -29 7444 6370 7 1503 207 0 0 0 chr1 120391311 120391334 -76804098 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1503 507 209 121 9 chr1 120391386 120391502 -76803930 - RSINE1 SINE B4 -34 131 3 7 1503 366 241 191 41 chr1 120391511 120391658 -76803774 - B4 SINE B4 -73 219 51 7 1503 456 208 0 0 chr1 120391874 120391975 -76803457 + CT-rich Low_complexity Low_complexity 4 104 0 7 1503 287 239 0 0 chr1 120392020 120392087 -76803345 - B3A SINE B2 -69 129 63 7 1503 491 201 92 7 chr1 120392352 120392502 -76802930 + RSINE1 SINE B4 2 165 0 7 1503 208 173 19 37 chr1 120392949 120393003 -76802429 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 7 1503 514 270 37 62 chr1 120393003 120393165 -76802267 - RSINE1 SINE B4 -2 163 6 7 1503 260 163 61 0 chr1 120393439 120393488 -76801944 + PB1D7 SINE Alu 56 107 -13 7 1503 336 290 32 138 chr1 120393509 120393697 -76801735 + B4A SINE B4 1 168 -124 8 1503 234 0 0 0 chr1 120393775 120393801 -76801631 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1503 1293 54 0 0 chr1 120393801 120394044 -76801388 + (CA)n Simple_repeat Simple_repeat 1 243 0 8 1503 223 217 0 21 chr1 120394751 120394798 -76800634 + RSINE1 SINE B4 9 54 -111 8 1503 503 210 315 0 chr1 120395306 120395339 -76800093 - B3 SINE B2 0 216 183 8 1503 288 0 0 0 chr1 120395339 120395371 -76800061 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1503 503 210 315 0 chr1 120395371 120395499 -76799933 - B3 SINE B2 -34 182 5 8 1503 508 217 8 91 chr1 120395563 120395695 -76799737 - RSINE1 SINE B4 0 165 45 8 1503 476 298 85 24 chr1 120396342 120396507 -76798925 + B3A SINE B2 8 182 -16 8 1503 542 326 49 0 chr1 120397227 120397472 -76797960 - MTD LTR MaLR -159 260 4 8 1503 1529 184 138 57 chr1 120398142 120398527 -76796905 - MTD LTR MaLR -2 417 2 8 1503 573 230 79 0 chr1 120398650 120398776 -76796656 + B1_Mur2 SINE Alu 7 142 -7 8 1503 245 294 98 27 chr1 120398851 120398963 -76796469 + B3A SINE B2 88 207 -9 8 1503 825 250 6 0 chr1 120399092 120399264 -76796168 + B3A SINE B2 1 173 -25 8 1503 243 0 0 0 chr1 120399270 120399297 -76796135 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1503 21 0 0 0 chr1 120399781 120399802 -76795630 + AT_rich Low_complexity Low_complexity 1 21 0 8 1503 261 200 0 0 chr1 120400920 120400975 -76794457 + RSINE1 SINE B4 26 80 -85 8 1503 518 108 0 12 chr1 120401010 120401094 -76794338 + (GGGAGA)n Simple_repeat Simple_repeat 3 85 0 8 1503 189 107 0 0 chr1 120401831 120401859 -76793573 + (CGTG)n Simple_repeat Simple_repeat 4 31 0 8 1503 283 182 18 0 chr1 120402316 120402371 -76793061 + ID SINE ID 12 67 -157 8 1503 391 212 35 0 chr1 120402398 120402483 -76792949 + ID_B1 SINE B4 137 224 0 8 1503 269 282 26 0 chr1 120404084 120404162 -76791270 + ID4 SINE ID 4 83 0 8 1503 321 206 55 0 chr1 120404188 120404261 -76791171 + ID4_ SINE ID 1 77 -6 8 1503 554 189 205 0 chr1 120404460 120404582 -76790850 - RSINE1 SINE B4 -15 150 4 8 1503 272 287 53 0 chr1 120404935 120405029 -76790403 - MIR SINE MIR -91 171 73 8 1503 365 283 13 26 chr1 120405031 120405187 -76790245 + RSINE1 SINE B4 9 162 -3 8 1503 588 133 48 0 chr1 120408204 120408309 -76787123 - B1_Mur1 SINE Alu 0 149 40 8 1503 401 248 96 51 chr1 120410290 120410447 -76784985 - RSINE1 SINE B4 0 165 2 8 1503 579 284 88 15 chr1 120410470 120410674 -76784758 - ID_B1 SINE B4 -3 221 3 8 1503 973 253 15 114 chr1 120411279 120411690 -76783742 - ORR1D2 LTR MaLR 0 370 1 8 1503 595 250 0 0 chr1 120412153 120412269 -76783163 + B1_Mur1 SINE Alu 21 136 -13 8 1503 350 94 0 15 chr1 120412351 120412416 -76783016 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 8 1503 306 0 0 0 chr1 120412490 120412524 -76782908 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1503 755 280 29 25 chr1 120412543 120412785 -76782647 - B4A SINE B4 -46 246 4 8 1503 293 304 53 9 chr1 120412964 120413077 -76782355 + PB1D7 SINE Alu 1 118 -2 8 1503 261 256 0 19 chr1 120413071 120413094 -76782338 + ID SINE ID 70 87 -205 8 1503 244 289 38 38 chr1 120413094 120413173 -76782259 + PB1D10 SINE Alu 3 81 -36 8 1503 572 292 86 46 chr1 120413489 120413561 -76781871 + B4A SINE B4 2 72 -220 8 1503 339 65 0 0 chr1 120413561 120413607 -76781825 + (CATA)n Simple_repeat Simple_repeat 1 46 0 8 1503 572 292 86 46 chr1 120413607 120413814 -76781618 + B4A SINE B4 73 291 -1 8 1503 462 101 0 0 chr1 120413826 120413895 -76781537 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1503 560 273 46 42 chr1 120414415 120414675 -76780757 - RCHARR1 DNA MER1_type 0 974 714 8 1503 654 220 264 4 chr1 120414715 120414957 -76780475 - RCHARR1 DNA MER1_type -331 643 339 8 1503 224 154 19 0 chr1 120416565 120416617 -76778815 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1503 575 193 25 8 chr1 120416890 120417010 -76778422 + B1F SINE Alu 1 122 -27 8 1503 234 81 0 0 chr1 120417509 120417546 -76777886 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 8 1503 440 226 25 50 chr1 120417868 120417989 -76777443 - ID_B1 SINE B4 -25 199 82 8 1503 866 281 96 4 chr1 120418708 120418958 -76776474 + B4A SINE B4 2 274 -18 8 1503 31 26 0 0 chr1 120420399 120420437 -76774995 + AT_rich Low_complexity Low_complexity 1 38 0 8 1503 357 24 0 0 chr1 120420649 120420691 -76774741 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 8 1503 1075 252 138 0 chr1 120423394 120423712 -76771720 - MTEa LTR MaLR 0 379 18 8 1503 380 208 125 29 chr1 120423950 120424054 -76771378 - PB1D9 SINE Alu 0 120 4 8 1503 727 72 0 18 chr1 120424190 120424304 -76771128 + BC1_Mm scRNA scRNA 1 112 -40 8 1503 1147 75 0 7 chr1 120424526 120424674 -76770758 - B1_Mus1 SINE Alu 0 148 2 8 1503 515 230 149 78 chr1 120424736 120424991 -76770441 + B4 SINE B4 3 275 -17 8 1503 261 0 0 0 chr1 120425014 120425043 -76770389 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1503 285 51 0 0 chr1 120425169 120425208 -76770224 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1503 264 253 198 7 chr1 120425208 120425323 -76770109 - B1F1 SINE Alu -11 138 10 8 1503 587 231 54 103 chr1 120425900 120426103 -76769329 + B3A SINE B2 3 195 -3 8 1503 476 309 94 38 chr1 120430733 120430945 -76764487 - MER2 DNA MER2_type -6 339 116 8 1503 438 221 183 0 chr1 120434524 120434628 -76760804 + RSINE1 SINE B4 17 139 -26 8 1503 523 259 121 11 chr1 120434969 120435163 -76760269 + B3A SINE B2 1 212 -4 8 1503 262 83 0 0 chr1 120435984 120436020 -76759412 - U2 snRNA snRNA -152 36 1 8 1503 263 262 238 31 chr1 120436117 120436310 -76759122 + B4A SINE B4 2 234 -58 8 1503 355 312 39 84 chr1 120436703 120436857 -76758575 + B4 SINE B4 1 147 -77 8 1503 327 49 0 0 chr1 120436884 120436925 -76758507 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1503 234 0 0 0 chr1 120436925 120436950 -76758482 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1503 459 0 0 0 chr1 120437681 120437732 -76757700 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1503 1166 55 7 0 chr1 120438901 120439046 -76756386 + B1_Mm SINE Alu 2 147 0 8 1503 204 40 0 0 chr1 120439551 120439576 -76755856 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1503 22 0 0 0 chr1 120440380 120440402 -76755030 + AT_rich Low_complexity Low_complexity 1 22 0 8 1503 645 263 0 7 chr1 120440512 120440650 -76754782 + B1F1 SINE Alu 1 137 -12 8 1503 221 128 21 0 chr1 120440845 120440892 -76754540 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 8 1503 389 300 69 0 chr1 120441522 120441652 -76753780 + RSINE1 SINE B4 3 141 -24 8 1503 183 80 0 0 chr1 120441655 120441680 -76753752 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1503 208 164 26 52 chr1 120442359 120442436 -76752996 + (TTTA)n Simple_repeat Simple_repeat 3 77 0 8 1503 424 323 18 12 chr1 120442940 120443106 -76752326 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 8 1503 734 212 13 20 chr1 120444666 120444815 -76750617 - B1_Mus1 SINE Alu 0 148 1 8 1503 382 305 94 72 chr1 120444815 120444852 -76750580 - B4 SINE B4 -212 80 40 8 1503 874 243 122 13 chr1 120445094 120445323 -76750109 + B4A SINE B4 24 277 -15 8 1503 180 238 0 0 chr1 120445342 120445405 -76750027 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1503 23 0 0 0 chr1 120445959 120445982 -76749450 + AT_rich Low_complexity Low_complexity 1 23 0 8 1503 324 70 0 0 chr1 120445986 120446029 -76749403 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1503 214 245 0 0 chr1 120446106 120446155 -76749277 + B4A SINE B4 11 59 -233 8 1503 233 204 8 34 chr1 120446597 120446660 -76748772 - BC1_Mm scRNA scRNA -9 74 11 8 1503 266 231 76 13 chr1 120446976 120447055 -76748377 + 4.5SRNA scRNA scRNA 3 86 -8 8 1503 621 87 98 0 chr1 120447012 120447104 -76748328 + B1_Mus2 SINE Alu 47 147 0 8 1503 21 0 0 0 chr1 120447532 120447553 -76747879 + AT_rich Low_complexity Low_complexity 1 21 0 8 1503 270 81 0 0 chr1 120447562 120447599 -76747833 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1503 225 216 59 0 chr1 120448445 120448496 -76746936 + LTR48 LTR ERV1 725 778 -9 8 1503 772 264 6 6 chr1 120449092 120449267 -76746165 - B3 SINE B2 -10 206 32 8 1503 1071 69 0 0 chr1 120449267 120449398 -76746034 + B1_Mm SINE Alu 2 132 -15 8 1503 245 135 0 0 chr1 120449430 120449467 -76745965 - B3A SINE B2 -161 37 1 8 1503 253 274 101 17 chr1 120449477 120449596 -76745836 - B3A SINE B2 0 198 70 8 1503 444 283 24 57 chr1 120449646 120449816 -76745616 - ID_B1 SINE B4 -66 158 15 8 1503 183 42 0 0 chr1 120449883 120449907 -76745525 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1503 1169 62 7 7 chr1 120449907 120450054 -76745378 - B1_Mus2 SINE Alu 0 147 1 8 1503 1240 21 7 14 chr1 120450679 120450826 -76744606 + B1_Mus1 SINE Alu 3 148 0 8 1503 270 257 27 0 chr1 120450880 120450954 -76744478 - ID4 SINE ID -6 77 2 8 1503 235 235 143 0 chr1 120450959 120451057 -76744375 - PB1D7 SINE Alu -7 113 2 8 1503 729 271 12 37 chr1 120451340 120451501 -76743931 + RSINE1 SINE B4 9 165 0 8 1503 258 136 0 0 chr1 120451520 120451564 -76743868 + (TATG)n Simple_repeat Simple_repeat 1 44 0 8 1503 606 209 119 44 chr1 120452261 120452421 -76743011 + B4 SINE B4 121 292 0 8 1503 1302 77 55 0 chr1 120452729 120452911 -76742521 + B2_Mm2 SINE B2 1 192 -3 8 1503 663 265 75 23 chr1 120452997 120453171 -76742261 + B4A SINE B4 1 183 -109 9 1503 441 0 0 0 chr1 120453181 120453230 -76742202 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1503 442 189 11 53 chr1 120453411 120453506 -76741926 - PB1D9 SINE Alu 0 120 30 9 1503 474 282 0 28 chr1 120453767 120453873 -76741559 + B3A SINE B2 82 184 -14 9 1503 22 0 0 0 chr1 120453899 120453921 -76741511 + AT_rich Low_complexity Low_complexity 1 22 0 9 1503 821 194 89 24 chr1 120453927 120454096 -76741336 + B3A SINE B2 1 180 -18 9 1503 504 267 76 0 chr1 120454410 120454541 -76740891 + ID_B1 SINE B4 19 159 -65 9 1503 265 341 59 0 chr1 120454468 120454553 -76740879 + PB1D10 SINE Alu 6 95 -22 9 1504 317 221 44 80 chr1 120455322 120455435 -76739997 - B1F2 SINE Alu -1 148 40 9 1504 924 139 0 69 chr1 120455435 120455813 -76739619 + (TCTCTG)n Simple_repeat Simple_repeat 1 352 0 9 1504 273 161 52 35 chr1 120455847 120455905 -76739527 - PB1D9 SINE Alu -61 59 1 9 1504 29 47 0 0 chr1 120456343 120456386 -76739046 + AT_rich Low_complexity Low_complexity 1 43 0 9 1504 1038 298 35 25 chr1 120457003 120457377 -76738055 - MTEa LTR MaLR -2 377 1 9 1504 495 218 41 95 chr1 120458547 120458694 -76736738 - ID_B1 SINE B4 -2 222 84 9 1504 23 0 0 0 chr1 120459331 120459354 -76736078 + AT_rich Low_complexity Low_complexity 1 23 0 9 1504 195 42 0 0 chr1 120459598 120459622 -76735810 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1504 823 267 47 69 chr1 120460329 120460606 -76734826 + B4 SINE B4 9 279 -13 9 1504 615 151 33 58 chr1 120461147 120461267 -76734165 - B1_Mur4 SINE Alu 0 150 34 9 1504 991 129 33 66 chr1 120461272 120461455 -76733977 - B2_Mm2 SINE B2 -16 179 3 9 1504 1241 184 234 3 chr1 120462288 120462583 -76732849 - MTD LTR MaLR -45 374 12 9 1504 381 274 21 0 chr1 120463113 120463208 -76732224 + B3A SINE B2 66 162 -36 9 1504 1131 207 266 0 chr1 120464651 120464941 -76730491 - ORR1D2 LTR MaLR -1 369 3 9 1504 2423 222 107 40 chr1 120464943 120466110 -76729322 - ORR1D2-int LTR MaLR -82 1498 2 9 1504 1086 206 236 3 chr1 120466120 120466412 -76729020 - ORR1D2 LTR MaLR -10 360 1 9 1504 225 0 0 0 chr1 120466456 120466481 -76728951 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1504 23 33 0 0 chr1 120467394 120467424 -76728008 + AT_rich Low_complexity Low_complexity 1 30 0 9 1504 490 297 28 94 chr1 120467789 120468001 -76727431 + B4 SINE B4 26 223 -69 9 1504 677 204 36 0 chr1 120467866 120468003 -76727429 + B1_Mur4 SINE Alu 9 150 0 9 1504 970 165 42 21 chr1 120468049 120468241 -76727191 + URR1A DNA MER1_type 31 226 0 9 1504 406 327 32 45 chr1 120468706 120468863 -76726569 + B3 SINE B2 60 214 -2 9 1504 268 263 84 75 chr1 120468915 120469022 -76726410 - MER2 DNA MER2_type -118 227 120 9 1504 496 225 0 22 chr1 120469053 120469144 -76726288 + RSINE1 SINE B4 47 135 -30 9 1504 8343 47 3 4 chr1 120469221 120470511 -76724921 - L1Md_F2 LINE L1 -2 6580 5292 9 1504 354 171 57 0 chr1 120470666 120470736 -76724696 + ID4 SINE ID 1 74 -9 9 1504 1081 181 197 123 chr1 120470785 120470843 -76724589 - MTD LTR MaLR 0 419 364 9 1504 1788 203 112 3 chr1 120470843 120471218 -76724214 + MTD LTR MaLR 4 419 0 9 1504 1081 181 197 123 chr1 120471218 120471365 -76724067 - MTD LTR MaLR -56 363 194 9 1504 855 177 0 33 chr1 120471365 120471517 -76723915 - B1_Mus1 SINE Alu 0 148 2 9 1504 1081 181 197 123 chr1 120471517 120471700 -76723732 - MTD LTR MaLR -226 193 1 9 1504 424 254 155 0 chr1 120472294 120472436 -76722996 + RSINE1 SINE B4 2 165 0 9 1504 387 169 0 0 chr1 120472472 120472543 -76722889 + (TTA)n Simple_repeat Simple_repeat 1 71 0 9 1504 23 68 0 0 chr1 120472578 120472622 -76722810 + AT_rich Low_complexity Low_complexity 1 44 0 9 1504 888 190 103 39 chr1 120472623 120472826 -76722606 - B3 SINE B2 0 216 1 9 1504 1018 258 143 39 chr1 120473078 120473546 -76721886 + L1MB4 LINE L1 5657 6173 -7 9 1504 2009 167 81 56 chr1 120473763 120474036 -76721396 - MTD LTR MaLR -13 406 110 9 1504 1416 88 5 0 chr1 120474036 120474228 -76721204 + B2_Mm1a SINE B2 1 193 0 9 1504 2009 167 81 56 chr1 120474228 120474348 -76721084 - MTD LTR MaLR -310 109 3 9 1504 698 250 76 0 chr1 120474886 120475030 -76720402 + B3A SINE B2 1 155 -43 9 1504 21 36 0 0 chr1 120475044 120475072 -76720360 + AT_rich Low_complexity Low_complexity 1 28 0 9 1504 459 206 98 0 chr1 120475166 120475258 -76720174 + PB1D9 SINE Alu 5 105 -15 9 1504 192 77 0 0 chr1 120475314 120475340 -76720092 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 9 1504 288 302 176 0 chr1 120476120 120476239 -76719193 - MIRb SINE MIR -34 234 95 9 1504 321 236 28 0 chr1 120476296 120476368 -76719064 + ID4_ SINE ID 1 74 -9 9 1504 41929 5 0 1 chr1 120478370 120485153 -76710279 - L1Md_A LINE L1 0 6582 1 9 1504 23 33 0 0 chr1 120485159 120485189 -76710243 + AT_rich Low_complexity Low_complexity 1 30 0 9 1504 604 223 68 86 chr1 120485193 120485355 -76710077 - RSINE1 SINE B4 -4 161 3 9 1504 3148 40 0 3 chr1 120485366 120485738 -76709694 - L1Md_F2 LINE L1 -12 6570 6200 9 1504 403 239 22 43 chr1 120487441 120487533 -76707899 + B4 SINE B4 2 91 -201 9 1504 300 346 96 30 chr1 120487604 120487771 -76707661 + HAL1-3A_ME LINE L1 2262 2439 -419 9 1504 297 0 0 0 chr1 120488578 120488611 -76706821 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 1504 301 314 96 59 chr1 120488613 120488833 -76706599 - HAL1-3A_ME LINE L1 -662 2196 1969 9 1504 428 310 29 72 chr1 120488867 120489006 -76706426 - RSINE1 SINE B4 -8 157 25 9 1504 321 312 0 24 chr1 120489032 120489114 -76706318 - RMER30 DNA MER1_type -121 81 2 9 1504 859 251 20 0 chr1 120489153 120489352 -76706080 + B3 SINE B2 1 203 -13 9 1504 354 172 0 0 chr1 120489825 120489889 -76705543 - HAL1-3A_ME LINE L1 -819 2039 1976 9 1504 407 273 34 0 chr1 120489910 120489998 -76705434 - B4 SINE B4 0 292 202 9 1504 367 295 71 95 chr1 120490130 120490340 -76705092 + B4 SINE B4 85 289 -3 9 1504 423 106 0 0 chr1 120490351 120490417 -76705015 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1504 389 208 407 7 chr1 120490475 120490620 -76704812 + B3 SINE B2 4 206 -10 9 1504 187 271 85 0 chr1 120491094 120491153 -76704279 + L4 LINE RTE 471 534 -1495 9 1504 382 274 85 0 chr1 120491477 120491583 -76703849 + PB1 SINE Alu 2 116 -11 9 1504 378 289 93 34 chr1 120491605 120491723 -76703709 + RSINE1 SINE B4 29 153 -12 9 1504 180 200 0 48 chr1 120492216 120492258 -76703174 + MIR SINE MIR 97 136 -72 9 1504 301 322 83 0 chr1 120493651 120493772 -76701660 - RSINE1 SINE B4 -15 150 20 9 1504 742 185 7 15 chr1 120494135 120494272 -76701160 - B1_Mur3 SINE Alu -13 136 1 9 1504 261 119 0 0 chr1 120494452 120494494 -76700938 + (T)n Simple_repeat Simple_repeat 1 42 0 9 1504 232 214 0 51 chr1 120494652 120494711 -76700721 + PB1D10 SINE Alu 37 92 -25 9 1504 269 267 25 74 chr1 120495589 120495670 -76699762 + ID SINE ID 2 78 -146 9 1504 450 0 0 0 chr1 120496064 120496114 -76699318 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1504 488 293 93 26 chr1 120496116 120496267 -76699165 - RSINE1 SINE B4 -2 163 3 9 1504 1019 187 21 0 chr1 120496375 120496562 -76698870 - MTEb LTR MaLR 0 379 189 9 1504 763 81 130 0 chr1 120497302 120497425 -76698007 - B1_Mur4 SINE Alu -5 145 7 9 1504 189 0 0 0 chr1 120497531 120497552 -76697880 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1504 293 246 15 0 chr1 120497682 120497747 -76697685 - RMER15 LTR ERVL -104 471 406 9 1504 365 311 26 45 chr1 120497749 120497904 -76697528 - Lx8 LINE L1 -206 7267 7116 9 1504 340 278 71 26 chr1 120498415 120498570 -76696862 - RSINE1 SINE B4 0 165 4 9 1504 507 294 151 20 chr1 120499363 120499509 -76695923 + RSINE1 SINE B4 1 165 0 9 1504 348 266 72 72 chr1 120500001 120500139 -76695293 - MER20 DNA MER1_type -80 139 2 1 1504 616 264 82 41 chr1 120500218 120500388 -76695044 + ID_B1 SINE B4 28 204 -20 2 1504 297 169 0 0 chr1 120500389 120500448 -76694984 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 3 1504 319 331 26 51 chr1 120500614 120500702 -76694730 - L1MCa LINE L1 -4225 2283 2199 4 1504 486 195 195 0 chr1 120500702 120500825 -76694607 - B1_Mus2 SINE Alu 0 147 1 5 1504 319 331 26 51 chr1 120500825 120500892 -76694540 - L1MCa LINE L1 -4310 2198 2132 4 1504 932 170 25 19 chr1 120500892 120501054 -76694378 - ORR1B2 LTR MaLR -74 293 131 6 1504 3317 53 0 0 chr1 120501078 120501476 -76693956 - L1_Mus1 LINE L1 0 6567 6170 7 1504 295 310 90 19 chr1 120502069 120502335 -76693097 - L1M4 LINE L1 -891 5249 4965 8 1504 429 287 21 8 chr1 120502452 120502646 -76692786 - L1MA4 LINE L1 -401 5899 5694 9 1504 421 278 66 85 chr1 120502639 120502910 -76692522 - L1M4 LINE L1 -1147 4999 4734 8 1504 186 43 0 0 chr1 120502917 120502940 -76692492 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1504 321 276 158 0 chr1 120502963 120503090 -76692342 - RSINE1 SINE B4 -17 148 2 1 1504 305 235 49 0 chr1 120504347 120504428 -76691004 - PB1D7 SINE Alu -34 86 2 1 1504 241 298 9 63 chr1 120504428 120504458 -76690974 - ID_B1 SINE B4 -60 164 60 1 1504 801 128 8 0 chr1 120504566 120504683 -76690749 + PB1D9 SINE Alu 1 118 -2 1 1504 351 0 0 0 chr1 120504746 120504785 -76690647 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1504 504 0 0 0 chr1 120504785 120504840 -76690592 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1504 409 343 44 7 chr1 120506188 120506323 -76689109 + RSINE1 SINE B4 2 141 -24 1 1504 454 215 91 83 chr1 120506442 120506574 -76688858 + B1_Mur1 SINE Alu 3 135 -14 1 1504 545 0 0 15 chr1 120506574 120506640 -76688792 + (CATA)n Simple_repeat Simple_repeat 3 67 0 1 1504 764 199 51 0 chr1 120507100 120507256 -76688176 - RSINE1 SINE B4 0 165 2 2 1504 233 235 103 0 chr1 120507256 120507324 -76688108 - L1MB2 LINE L1 -39 6141 6067 2 1504 1035 259 19 110 chr1 120507444 120507539 -76687893 - B4 SINE B4 -3 289 217 2 1504 414 0 0 0 chr1 120507539 120507585 -76687847 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1504 1035 259 19 110 chr1 120507585 120507806 -76687626 - B4 SINE B4 -76 216 2 2 1504 359 247 9 59 chr1 120507808 120507974 -76687458 - L1MB2 LINE L1 -335 5956 5800 2 1504 255 304 18 0 chr1 120508019 120508075 -76687357 + PB1D10 SINE Alu 30 86 -31 2 1504 240 278 68 14 chr1 120508057 120508130 -76687302 + RSINE1 SINE B4 43 119 -46 2 1504 1245 34 0 7 chr1 120508130 120508277 -76687155 + B1_Mm SINE Alu 2 147 0 2 1504 315 0 0 0 chr1 120508306 120508341 -76687091 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1504 186 284 153 57 chr1 120508551 120508708 -76686724 - MIRm SINE MIR -104 172 1 2 1504 273 182 55 0 chr1 120508778 120508833 -76686599 - MER5A DNA MER1_type -107 82 25 2 1504 782 251 36 10 chr1 120509009 120509225 -76686207 + B4 SINE B4 53 284 -8 3 1504 225 0 0 0 chr1 120509255 120509280 -76686152 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1504 1398 69 6 0 chr1 120509280 120509454 -76685978 + B2_Mm1a SINE B2 5 179 -14 3 1504 3847 83 13 24 chr1 120509473 120510016 -76685416 - L1Md_F2 LINE L1 0 6582 6046 3 1504 237 118 0 0 chr1 120510122 120510156 -76685276 - L1Md_A LINE L1 -373 6209 6176 3 1504 316 0 102 0 chr1 120510156 120510205 -76685227 + (GAAAA)n Simple_repeat Simple_repeat 5 58 0 3 1504 416 330 140 0 chr1 120510749 120510928 -76684504 - MIR SINE MIR -21 241 38 3 1504 479 271 9 18 chr1 120510946 120511054 -76684378 + RSINE1 SINE B4 41 147 -18 3 1504 2126 108 24 51 chr1 120511054 120511157 -76684275 - ORR1A2 LTR MaLR -3 324 232 3 1504 1254 48 0 0 chr1 120511157 120511304 -76684128 + B1_Mus2 SINE Alu 1 147 0 3 1504 2126 108 24 51 chr1 120511304 120511533 -76683899 - ORR1A2 LTR MaLR -96 231 1 3 1504 6143 92 57 10 chr1 120511534 120512427 -76683005 - ORR1A2-int LTR MaLR 0 1963 1029 3 1504 24 0 0 0 chr1 120512427 120512451 -76682981 + AT_rich Low_complexity Low_complexity 1 24 0 4 1504 10472 79 11 5 chr1 120512831 120514708 -76680724 - Lx3_Mus LINE L1 -12 6997 5113 4 1504 1292 98 49 0 chr1 120514708 120514892 -76680540 - B2_Mm2 SINE B2 -2 193 1 4 1504 8145 78 6 12 chr1 120514892 120515223 -76680209 - Lx3_Mus LINE L1 -774 5112 4783 4 1504 4140 160 25 118 chr1 120515223 120515772 -76679660 - ORR1A2-int LTR MaLR -906 886 249 3 1504 2928 61 64 3 chr1 120515772 120516149 -76679283 - MTB LTR MaLR 0 400 1 4 1504 4140 157 25 121 chr1 120516149 120516597 -76678835 - ORR1A2-int LTR MaLR -1322 470 1 3 1504 571 87 12 12 chr1 120516597 120516679 -76678753 - ORR1A2 LTR MaLR 0 326 245 3 1504 240 35 0 0 chr1 120516747 120516776 -76678656 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1504 897 56 164 16 chr1 120516776 120516904 -76678528 - B1_Mm SINE Alu 0 147 1 4 1504 621 277 44 44 chr1 120516929 120517133 -76678299 + ID_B1 SINE B4 2 205 -19 4 1504 22 0 0 0 chr1 120517147 120517169 -76678263 + AT_rich Low_complexity Low_complexity 1 22 0 4 1504 823 67 0 0 chr1 120517169 120517274 -76678158 - B1_Mus2 SINE Alu 0 147 43 4 1504 2685 45 18 3 chr1 120517273 120517609 -76677823 + ORR1A1 LTR MaLR 6 346 0 4 1504 977 65 0 0 chr1 120517622 120517745 -76677687 + B1_Mus2 SINE Alu 25 147 0 5 1504 667 221 6 94 chr1 120517889 120518049 -76677383 + ID_B1 SINE B4 58 203 -21 5 1504 322 227 56 22 chr1 120518125 120518215 -76677217 - PB1D10 SINE Alu -2 115 23 5 1504 304 238 0 0 chr1 120518318 120518381 -76677051 - MTE2b LTR MaLR 0 379 317 5 1504 534 148 17 9 chr1 120518398 120518514 -76676918 + GA-rich Low_complexity Low_complexity 4 120 0 5 1504 1233 239 74 29 chr1 120518539 120518849 -76676583 - MTE2b LTR MaLR -55 324 1 5 1504 867 199 16 31 chr1 120519116 120519308 -76676124 + B3A SINE B2 5 193 -5 5 1504 461 195 278 23 chr1 120519857 120520030 -76675402 + ID_B1 SINE B4 1 217 -7 5 1504 288 289 13 38 chr1 120520103 120520118 -76675314 - ID4_ SINE ID 0 83 7 5 1504 312 250 16 0 chr1 120520118 120520182 -76675250 - tRNA-Ala-GCY_ tRNA tRNA -10 65 1 5 1504 396 266 21 0 chr1 120520187 120520281 -76675151 - MER33 DNA MER1_type -199 125 30 5 1504 909 79 7 14 chr1 120520303 120520445 -76674987 + (TTTC)n Simple_repeat Simple_repeat 4 144 0 6 1504 599 309 105 0 chr1 120520445 120520636 -76674796 - ID_B1 SINE B4 -13 211 1 6 1504 416 292 0 70 chr1 120520685 120520799 -76674633 - RSINE1 SINE B4 0 165 60 6 1504 246 283 86 62 chr1 120521130 120521258 -76674174 + LTR16A LTR ERVL 275 405 -46 6 1504 807 75 0 0 chr1 120521670 120521776 -76673656 + B1_Mus1 SINE Alu 35 140 -8 6 1504 181 53 25 50 chr1 120521784 120521824 -76673608 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 6 1504 192 111 0 0 chr1 120521849 120521885 -76673547 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1504 378 0 0 0 chr1 120521886 120521928 -76673504 + (GGA)n Simple_repeat Simple_repeat 3 44 0 6 1504 525 256 0 49 chr1 120521954 120522077 -76673355 + RSINE1 SINE B4 5 121 -44 6 1504 232 243 66 26 chr1 120523610 120523686 -76671746 + RSINE1 SINE B4 56 134 -31 6 1504 213 65 0 0 chr1 120523707 120523738 -76671694 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 7 1504 27 0 0 0 chr1 120523993 120524020 -76671412 + AT_rich Low_complexity Low_complexity 1 27 0 7 1504 418 234 80 55 chr1 120524020 120524128 -76671304 - ID_B1 SINE B4 -52 172 68 7 1504 22 35 0 0 chr1 120525591 120525620 -76669812 + AT_rich Low_complexity Low_complexity 1 29 0 7 1504 235 156 10 109 chr1 120526158 120526259 -76669173 + T-rich Low_complexity Low_complexity 2 92 0 7 1504 369 0 0 0 chr1 120526507 120526548 -76668884 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1504 258 263 134 42 chr1 120527082 120527201 -76668231 + B1F2 SINE Alu 14 143 -6 7 1504 305 47 0 23 chr1 120527252 120527296 -76668136 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1504 489 138 100 0 chr1 120527301 120527381 -76668051 - B1_Mur2 SINE Alu -13 136 49 7 1504 734 316 50 46 chr1 120527383 120527645 -76667787 - B4 SINE B4 -28 264 2 7 1504 602 307 0 13 chr1 120527810 120527962 -76667470 + RSINE1 SINE B4 3 152 -13 8 1504 361 294 128 0 chr1 120528169 120528271 -76667161 + RSINE1 SINE B4 22 136 -29 8 1504 486 0 0 0 chr1 120528287 120528341 -76667091 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 8 1504 304 270 13 13 chr1 120528431 120528506 -76666926 + ID4 SINE ID 3 77 -6 8 1504 206 179 26 0 chr1 120528516 120528555 -76666877 + GA-rich Low_complexity Low_complexity 4 43 0 8 1504 1425 65 27 5 chr1 120529176 120529362 -76666070 + B2_Mm1t SINE B2 1 190 -3 8 1504 418 190 70 23 chr1 120529806 120529892 -76665540 - PB1D10 SINE Alu -1 116 27 8 1504 192 97 0 0 chr1 120529948 120529979 -76665453 + (TATG)n Simple_repeat Simple_repeat 2 32 0 8 1504 307 292 177 68 chr1 120530009 120530039 -76665393 - RSINE1 SINE B4 0 165 137 8 1504 258 56 0 0 chr1 120530039 120530075 -76665357 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1504 307 292 177 68 chr1 120530075 120530191 -76665241 - RSINE1 SINE B4 -29 136 3 8 1504 857 215 49 20 chr1 120531356 120531560 -76663872 + ID_B1 SINE B4 2 211 -13 9 1504 321 26 0 0 chr1 120531563 120531601 -76663831 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 9 1504 701 23 0 11 chr1 120531601 120531688 -76663744 + (GAAA)n Simple_repeat Simple_repeat 1 87 0 9 1504 319 235 60 99 chr1 120531688 120531705 -76663727 - YREP_Mm Unknown Unknown -1487 325 182 9 1504 972 135 0 0 chr1 120531705 120531838 -76663594 + B1_Mur4 SINE Alu 12 144 -6 9 1504 426 39 0 0 chr1 120531852 120531904 -76663528 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1504 201 108 0 0 chr1 120531906 120531943 -76663489 + (CTAG)n Simple_repeat Simple_repeat 3 39 0 9 1504 543 215 63 40 chr1 120531968 120532094 -76663338 + B1_Mur4 SINE Alu 17 145 -5 9 1504 302 301 35 57 chr1 120532210 120532246 -76663186 + L1MEg LINE L1 1862 1892 -4192 9 1504 1079 95 0 39 chr1 120532246 120532399 -76663033 + B1_Mm SINE Alu 1 147 0 9 1504 302 301 35 57 chr1 120532399 120532503 -76662929 + L1MEg LINE L1 1893 1999 -4085 9 1504 658 243 52 0 chr1 120532567 120532703 -76662729 - RSINE1 SINE B4 -22 143 1 1 1504 676 267 110 0 chr1 120532828 120532974 -76662458 + RSINE1 SINE B4 4 165 0 1 1504 238 278 90 60 chr1 120532863 120532997 -76662435 + B2_Mm2 SINE B2 54 191 -4 1 1504 21 36 0 0 chr1 120533245 120533273 -76662159 + AT_rich Low_complexity Low_complexity 1 28 0 1 1504 1814 147 151 12 chr1 120533283 120533620 -76661812 - ORR1C2 LTR MaLR 0 384 1 1 1504 378 267 105 84 chr1 120533726 120533869 -76661563 - B4A SINE B4 -145 147 2 1 1504 510 275 26 67 chr1 120533934 120534129 -76661303 - B3A SINE B2 -10 188 2 1 1504 335 248 59 42 chr1 120534160 120534278 -76661154 - PB1D7 SINE Alu 0 120 1 1 1504 215 273 0 18 chr1 120534531 120534587 -76660845 - ID4_ SINE ID -28 55 1 1 1504 278 297 68 59 chr1 120534615 120534733 -76660699 - RSINE1 SINE B4 -2 163 45 1 1504 464 265 10 0 chr1 120534878 120534980 -76660452 - 5S rRNA rRNA -17 104 2 1 1504 462 185 42 32 chr1 120535043 120535138 -76660294 + PB1D10 SINE Alu 20 115 -2 1 1504 423 0 0 0 chr1 120535708 120535755 -76659677 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1504 582 86 0 0 chr1 120535821 120535902 -76659530 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1504 484 247 198 31 chr1 120535902 120536094 -76659338 - ID_B1 SINE B4 0 224 1 1 1504 887 79 0 0 chr1 120536939 120537053 -76658379 - B2_Mm2 SINE B2 -80 115 2 1 1504 23 33 0 0 chr1 120537053 120537083 -76658349 + AT_rich Low_complexity Low_complexity 1 30 0 1 1504 322 306 39 39 chr1 120537088 120537190 -76658242 - RSINE1 SINE B4 0 165 64 1 1504 330 211 18 0 chr1 120537202 120537259 -76658173 - PB1D9 SINE Alu -62 58 1 1 1504 297 0 0 0 chr1 120537378 120537411 -76658021 + (TGG)n Simple_repeat Simple_repeat 3 35 0 1 1504 449 188 23 12 chr1 120537467 120537553 -76657879 - PB1D10 SINE Alu 0 117 31 1 1504 280 234 29 78 chr1 120537577 120537679 -76657753 - L1MA4 LINE L1 -198 6102 6006 1 1504 1544 58 16 0 chr1 120537800 120537988 -76657444 - B2_Mm2 SINE B2 -2 193 3 1 1504 640 255 19 6 chr1 120538007 120538165 -76657267 - B4 SINE B4 0 292 133 1 1504 334 254 48 20 chr1 120538160 120538281 -76657151 - PB1D9 SINE Alu -20 129 2 1 1504 301 288 0 0 chr1 120538330 120538403 -76657029 - B4 SINE B4 -219 73 1 1 1504 1194 235 3 59 chr1 120538760 120539049 -76656383 + B4A SINE B4 4 276 -16 1 1504 604 284 25 13 chr1 120539083 120539240 -76656192 + RSINE1 SINE B4 5 163 -2 1 1504 184 227 147 29 chr1 120539491 120539559 -76655873 + L4 LINE RTE 662 737 -1292 1 1504 485 230 228 65 chr1 120540490 120540722 -76654710 + B4A SINE B4 1 270 -22 1 1504 241 182 34 0 chr1 120540756 120540844 -76654588 + RMER17C LTR ERVK 164 254 -156 1 1504 318 175 0 0 chr1 120541097 120541108 -76654324 + T-rich Low_complexity Low_complexity 53 63 0 1 1504 522 0 0 0 chr1 120541108 120541166 -76654266 + (TCTCC)n Simple_repeat Simple_repeat 5 62 0 1 1504 318 175 0 0 chr1 120541166 120541217 -76654215 + T-rich Low_complexity Low_complexity 2 52 0 1 1504 328 82 0 0 chr1 120541218 120541267 -76654165 - B1_Mur4 SINE Alu 0 150 102 1 1504 863 209 61 83 chr1 120541411 120541477 -76653955 - ID_B1 SINE B4 0 224 155 1 1504 1171 69 33 113 chr1 120541477 120541689 -76653743 - B2_Mm2 SINE B2 0 195 1 1 1504 863 209 61 83 chr1 120541689 120541851 -76653581 - ID_B1 SINE B4 -70 154 1 1 1504 423 0 0 0 chr1 120541960 120542007 -76653425 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1504 294 73 0 0 chr1 120542035 120542076 -76653356 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1504 508 248 10 0 chr1 120542076 120542177 -76653255 - RSINE1 SINE B4 -54 111 10 1 1504 227 243 0 129 chr1 120542267 120542352 -76653080 + MT2B LTR ERVL 160 233 -368 1 1504 562 246 8 8 chr1 120542279 120542406 -76653026 + B1_Mur2 SINE Alu 7 133 -16 1 1504 227 211 0 66 chr1 120542653 120542714 -76652718 - B4 SINE B4 -235 57 1 1 1504 1304 209 103 29 chr1 120542784 120543134 -76652298 - MTEa LTR MaLR -3 376 1 1 1504 549 0 0 0 chr1 120543737 120543798 -76651634 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1504 1084 249 22 18 chr1 120543837 120544115 -76651317 - RLTR16 LTR ERVK -226 279 1 1 1504 339 197 41 27 chr1 120544129 120544202 -76651230 + RSINE1 SINE B4 55 128 -37 1 1504 429 264 45 103 chr1 120545168 120545238 -76650194 + ID SINE ID 18 78 -146 1 1504 226 266 158 44 chr1 120545238 120545352 -76650080 + PB1 SINE Alu 1 127 0 1 1504 405 269 118 0 chr1 120545967 120546086 -76649346 + B3A SINE B2 36 168 -30 1 1504 398 290 168 0 chr1 120546134 120546241 -76649191 + B4A SINE B4 110 234 -58 1 1504 340 171 71 0 chr1 120546808 120546878 -76648554 + B4 SINE B4 125 199 -93 1 1504 441 0 0 0 chr1 120547589 120547638 -76647794 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1504 231 229 0 0 chr1 120547647 120547695 -76647737 - RSINE1 SINE B4 -38 127 80 1 1504 244 284 185 0 chr1 120547711 120547792 -76647640 - PB1D10 SINE Alu -1 116 21 1 1504 284 173 0 19 chr1 120548007 120548060 -76647372 - B1_Mur2 SINE Alu -1 148 97 1 1504 447 209 369 7 chr1 120548438 120548587 -76646845 - B3 SINE B2 -12 204 2 1 1504 312 0 0 0 chr1 120548599 120548643 -76646789 - L1Md_T LINE L1 -1 6581 6538 1 1504 325 260 14 0 chr1 120548690 120548763 -76646669 + B4A SINE B4 25 98 -194 1 1504 258 275 43 0 chr1 120548765 120548834 -76646598 + PB1D10 SINE Alu 41 112 -5 1 1504 333 267 35 0 chr1 120549638 120549724 -76645708 + B1F2 SINE Alu 1 89 -60 1 1504 336 127 0 0 chr1 120549745 120549800 -76645632 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1504 395 200 104 62 chr1 120549801 120549897 -76645535 - B1_Mur2 SINE Alu -49 100 1 1 1504 785 278 94 24 chr1 120550611 120550865 -76644567 + B4 SINE B4 3 274 -18 1 1504 198 0 0 0 chr1 120550876 120550898 -76644534 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1504 376 294 47 23 chr1 120550929 120551058 -76644374 + RSINE1 SINE B4 25 156 -9 1 1504 216 0 0 0 chr1 120551065 120551089 -76644343 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1504 287 48 42 76 chr1 120551128 120551187 -76644245 - B1_Mur2 SINE Alu -2 147 89 1 1504 1118 73 33 0 chr1 120551213 120551364 -76644068 + URR1A DNA MER1_type 71 226 0 1 1504 240 255 16 147 chr1 120551355 120551366 -76644066 - MT2B LTR ERVL -347 254 225 1 1504 478 217 11 0 chr1 120551366 120551458 -76643974 - B1_Mur2 SINE Alu -55 94 2 1 1504 240 255 16 147 chr1 120551458 120551484 -76643948 - MT2B LTR ERVL -347 224 143 1 1504 419 168 81 69 chr1 120551698 120551801 -76643631 - PB1D10 SINE Alu 0 117 14 1 1504 711 291 70 15 chr1 120551853 120552052 -76643380 + B4A SINE B4 20 229 -63 1 1504 511 209 78 17 chr1 120552060 120552178 -76643254 + B1_Mus2 SINE Alu 4 122 -27 1 1504 269 216 27 0 chr1 120552180 120552254 -76643178 + (CAA)n Simple_repeat Simple_repeat 3 78 0 1 1504 351 0 0 0 chr1 120552342 120552381 -76643051 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1504 468 0 0 0 chr1 120553359 120553411 -76642021 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1504 358 346 7 37 chr1 120553416 120553551 -76641881 - B1_Mur1 SINE Alu -18 131 1 1 1504 796 251 28 20 chr1 120553551 120553647 -76641785 - B4A SINE B4 -206 86 1 1 1504 494 301 160 14 chr1 120554345 120554557 -76640875 - B4A SINE B4 0 292 50 1 1504 767 162 7 37 chr1 120556211 120556346 -76639086 - B1_Mur3 SINE Alu -1 148 18 1 1504 657 235 36 7 chr1 120556358 120556495 -76638937 + RSINE1 SINE B4 11 151 -14 1 1504 216 67 0 0 chr1 120556512 120556542 -76638890 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1504 482 155 0 10 chr1 120556817 120556915 -76638517 + CT-rich Low_complexity Low_complexity 4 100 0 1 1504 552 170 10 20 chr1 120556920 120557022 -76638410 - PB1D9 SINE Alu -18 102 2 1 1504 432 0 0 0 chr1 120557105 120557153 -76638279 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1504 238 204 0 0 chr1 120557154 120557208 -76638224 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1 1504 468 169 0 0 chr1 120558803 120558874 -76636558 - ID4_ SINE ID -11 72 2 1 1504 784 150 56 21 chr1 120558912 120559055 -76636377 - B1_Mur4 SINE Alu 0 150 3 1 1504 592 235 75 8 chr1 120559066 120559199 -76636233 - B1F1 SINE Alu -6 143 2 1 1504 297 75 0 0 chr1 120559202 120559242 -76636190 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1504 495 200 217 0 chr1 120559720 120559835 -76635597 + ID_B1 SINE B4 49 188 -36 1 1504 696 83 0 0 chr1 120560096 120560192 -76635240 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1504 629 307 138 50 chr1 120560206 120560446 -76634986 - B4A SINE B4 -1 291 31 1 1504 1698 214 42 20 chr1 120560637 120560990 -76634442 - MTEa LTR MaLR -1 378 18 1 1504 584 261 185 5 chr1 120561732 120561921 -76633511 + ID_B1 SINE B4 2 224 0 1 1504 423 0 0 0 chr1 120561981 120562028 -76633404 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1504 952 72 0 14 chr1 120562028 120562168 -76633264 + (GAA)n Simple_repeat Simple_repeat 3 140 0 1 1504 417 220 66 0 chr1 120563020 120563111 -76632321 - MTEa LTR MaLR -1 378 282 1 1504 3225 53 13 2 chr1 120563474 120563870 -76631562 - MTB LTR MaLR 0 400 1 1 1504 865 250 122 27 chr1 120563989 120564252 -76631180 - MTEa LTR MaLR -91 288 1 1 1504 294 286 39 0 chr1 120564549 120564626 -76630806 - ID4 SINE ID -2 81 2 1 1504 298 320 47 30 chr1 120564632 120564822 -76630610 + MIRb SINE MIR 19 213 -63 1 1504 232 316 0 106 chr1 120564822 120564907 -76630525 - ID4 SINE ID 0 83 8 2 1504 493 218 43 159 chr1 120565373 120565630 -76629802 - ORR1E LTR MaLR -2 357 131 2 1504 287 378 0 0 chr1 120566637 120566735 -76628697 - RSINE1 SINE B4 -13 152 55 2 1504 478 292 23 23 chr1 120567315 120567448 -76627984 + B4 SINE B4 5 137 -155 2 1504 267 143 0 71 chr1 120567700 120567798 -76627634 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 2 1504 279 54 0 0 chr1 120567798 120567835 -76627597 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1504 322 305 21 10 chr1 120567853 120567949 -76627483 - MIR SINE MIR -118 144 48 2 1504 491 245 9 28 chr1 120568061 120568170 -76627262 - B1F2 SINE Alu -42 107 1 2 1504 500 306 13 26 chr1 120568196 120568347 -76627085 - B1F SINE Alu 0 149 1 2 1504 709 259 45 60 chr1 120568506 120568707 -76626725 - ID_B1 SINE B4 -26 198 1 2 1504 231 159 0 0 chr1 120569201 120569230 -76626202 + T-rich Low_complexity Low_complexity 16 44 0 2 1504 1674 26 0 0 chr1 120569230 120569421 -76626011 - B2_Mm1a SINE B2 -1 192 2 2 1504 231 159 0 0 chr1 120569421 120569435 -76625997 + T-rich Low_complexity Low_complexity 2 15 0 2 1504 294 29 0 0 chr1 120569480 120569515 -76625917 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1504 259 338 157 34 chr1 120569624 120569771 -76625661 - RSINE1 SINE B4 0 165 1 2 1504 906 261 16 85 chr1 120569931 120570237 -76625195 - B4 SINE B4 -6 286 2 2 1504 615 266 229 14 chr1 120570723 120571016 -76624416 - ORR1E LTR MaLR -1 358 3 2 1504 557 264 0 81 chr1 120571407 120571568 -76623864 - B1_Mur1 SINE Alu -1 148 1 2 1504 22 0 0 0 chr1 120571576 120571598 -76623834 + AT_rich Low_complexity Low_complexity 1 22 0 2 1504 938 142 13 39 chr1 120571679 120571833 -76623599 - B1_Mur4 SINE Alu 0 150 1 2 1504 712 80 20 0 chr1 120571850 120571950 -76623482 - B1_Mus2 SINE Alu 0 147 46 2 1504 290 309 71 167 chr1 120571950 120572096 -76623336 - B4 SINE B4 -64 220 1 2 1504 725 251 18 30 chr1 120572684 120572852 -76622580 + B3A SINE B2 2 167 -31 2 1504 549 124 0 0 chr1 120572856 120572953 -76622479 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1504 265 340 97 52 chr1 120573199 120573354 -76622078 - ORR1E LTR MaLR -166 193 32 2 1504 959 215 94 109 chr1 120573467 120573743 -76621689 + B4 SINE B4 5 276 -16 2 1504 252 0 0 0 chr1 120573751 120573779 -76621653 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1504 1281 241 57 51 chr1 120574622 120574976 -76620456 - ORR1E LTR MaLR 0 359 4 2 1504 234 203 100 14 chr1 120575184 120575254 -76620178 + ID2 SINE ID 2 77 -6 2 1504 1050 64 57 7 chr1 120575433 120575574 -76619858 - B1_Mus1 SINE Alu 0 148 1 2 1504 535 263 82 14 chr1 120575834 120576054 -76619378 - L1M4 LINE L1 -469 5709 5475 2 1504 831 267 20 20 chr1 120576085 120576284 -76619148 - ID_B1 SINE B4 -21 203 5 2 1504 394 239 161 0 chr1 120576323 120576521 -76618911 - L1M4 LINE L1 -761 5423 5186 2 1504 274 283 185 0 chr1 120576559 120576651 -76618781 + PB1D10 SINE Alu 2 110 -7 2 1504 290 221 81 11 chr1 120576693 120576780 -76618652 - L1M4 LINE L1 -1021 5125 5033 2 1504 916 230 13 53 chr1 120576790 120576859 -76618573 - B3 SINE B2 0 216 150 2 1504 258 32 0 0 chr1 120576859 120576890 -76618542 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1504 916 230 13 53 chr1 120576890 120577045 -76618387 - B3 SINE B2 -67 149 1 2 1504 328 307 15 23 chr1 120577065 120577195 -76618237 - L1M4 LINE L1 -1121 5025 4897 2 1504 658 262 163 5 chr1 120577715 120577757 -76617675 - MTEa LTR MaLR 0 379 337 2 1504 327 19 58 0 chr1 120577757 120577809 -76617623 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 2 1504 658 262 163 5 chr1 120577809 120577947 -76617485 - MTEa LTR MaLR -43 336 168 2 1504 2545 85 87 3 chr1 120577947 120578314 -76617118 - MTB LTR MaLR -2 398 1 2 1504 291 183 150 0 chr1 120578349 120578409 -76617023 - MT2A LTR ERVL -411 122 54 2 1504 420 217 0 0 chr1 120578397 120578480 -76616952 + U1 snRNA snRNA 1 83 -82 2 1504 444 220 0 5 chr1 120578532 120578632 -76616800 - MTEa LTR MaLR -278 101 5 2 1504 387 238 117 122 chr1 120579756 120579952 -76615480 + ID_B1 SINE B4 2 196 -28 2 1504 349 249 13 82 chr1 120580036 120580156 -76615276 - ID4 SINE ID -37 115 1 2 1504 261 70 52 17 chr1 120580213 120580271 -76615161 - L1Md_F2 LINE L1 0 6582 6523 2 1504 413 259 125 15 chr1 120581820 120582020 -76613412 - L1MB3 LINE L1 -63 6120 5899 2 1504 469 248 34 0 chr1 120582191 120582308 -76613124 + ID_B1 SINE B4 103 223 -1 2 1504 23 0 0 0 chr1 120582601 120582624 -76612808 + AT_rich Low_complexity Low_complexity 1 23 0 2 1504 557 344 103 68 chr1 120582729 120582930 -76612502 + B4A SINE B4 2 226 -66 2 1504 725 145 19 94 chr1 120582930 120583090 -76612342 + B1_Mur3 SINE Alu 1 148 -1 2 1504 557 344 103 68 chr1 120583090 120583146 -76612286 + B4A SINE B4 227 274 -18 2 1504 243 0 0 0 chr1 120583146 120583173 -76612259 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1504 557 344 103 68 chr1 120583173 120583195 -76612237 + B4A SINE B4 275 292 0 2 1504 770 238 88 16 chr1 120583369 120583561 -76611871 + ID_B1 SINE B4 19 224 0 2 1504 184 352 54 54 chr1 120584152 120584245 -76611187 - MIR3 SINE MIR -15 193 101 2 1504 466 307 93 0 chr1 120584726 120584876 -76610556 - RSINE1 SINE B4 0 165 2 2 1504 230 234 0 0 chr1 120584924 120584959 -76610473 + T-rich Low_complexity Low_complexity 17 51 0 2 1504 1463 73 11 0 chr1 120584959 120585150 -76610282 - B2_Mm1t SINE B2 0 193 1 2 1504 230 234 0 0 chr1 120585150 120585161 -76610271 + T-rich Low_complexity Low_complexity 6 16 0 2 1504 772 192 200 17 chr1 120585170 120585350 -76610082 - B3 SINE B2 -1 215 3 2 1504 261 0 0 0 chr1 120585705 120585734 -76609698 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1504 299 305 39 84 chr1 120585819 120585998 -76609434 - MER21B LTR ERV1 -633 230 60 2 1504 21 36 0 0 chr1 120585998 120586026 -76609406 + AT_rich Low_complexity Low_complexity 1 28 0 2 1504 762 174 13 53 chr1 120586026 120586178 -76609254 + B1_Mur1 SINE Alu 2 147 -2 2 1504 225 191 0 0 chr1 120586188 120586235 -76609197 + (TTA)n Simple_repeat Simple_repeat 3 49 0 2 1505 228 135 0 0 chr1 120586864 120586901 -76608531 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 2 1505 279 0 0 0 chr1 120586904 120586935 -76608497 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1505 1450 84 16 0 chr1 120587259 120587449 -76607983 + B2_Mm2 SINE B2 2 194 -1 2 1505 297 256 108 12 chr1 120587465 120587548 -76607884 + PB1D10 SINE Alu 12 102 -15 2 1505 266 366 101 30 chr1 120587537 120587706 -76607726 - B3A SINE B2 -16 182 2 2 1505 654 332 72 54 chr1 120587963 120588240 -76607192 + B4A SINE B4 4 285 -7 2 1505 387 0 0 0 chr1 120588869 120588912 -76606520 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1505 324 0 0 0 chr1 120588912 120588947 -76606485 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1505 471 241 214 8 chr1 120588952 120589069 -76606363 - B3A SINE B2 -57 141 1 2 1505 917 236 128 42 chr1 120589124 120589389 -76606043 - B4A SINE B4 0 292 5 2 1505 957 246 30 0 chr1 120589403 120589602 -76605830 - ID_B1 SINE B4 -16 208 4 2 1505 648 36 0 0 chr1 120590442 120590525 -76604907 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1505 618 336 71 34 chr1 120590527 120590795 -76604637 - B4 SINE B4 -2 290 13 2 1505 357 279 125 42 chr1 120591307 120591541 -76603891 + MIR SINE MIR 6 227 -35 2 1505 256 255 0 0 chr1 120592758 120592805 -76602627 - B4 SINE B4 -1 291 245 2 1505 371 247 0 70 chr1 120592848 120592948 -76602484 - B4 SINE B4 -195 97 5 2 1505 806 220 137 0 chr1 120593127 120593309 -76602123 + B4 SINE B4 9 215 -77 2 1505 2105 89 29 104 chr1 120593306 120593680 -76601752 - ORR1B1 LTR MaLR -8 386 41 2 1505 180 0 0 0 chr1 120594340 120594360 -76601072 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1505 810 269 156 29 chr1 120594561 120594875 -76600557 + ORR1E LTR MaLR 1 354 -5 2 1505 928 257 152 10 chr1 120595033 120595328 -76600104 - ORR1E LTR MaLR -2 357 21 2 1505 408 200 0 0 chr1 120595343 120595428 -76600004 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1505 37 39 0 0 chr1 120595433 120595484 -76599948 + AT_rich Low_complexity Low_complexity 1 51 0 2 1505 632 245 58 6 chr1 120596866 120597022 -76598410 - ID_B1 SINE B4 -21 203 40 2 1505 1581 219 58 9 chr1 120597462 120597807 -76597625 - MTEb LTR MaLR -6 373 12 2 1505 287 178 0 0 chr1 120598133 120598178 -76597254 - L2c LINE L2 -227 3160 3116 2 1505 1316 255 3 14 chr1 120598194 120598488 -76596944 + B4A SINE B4 2 292 0 2 1505 571 283 14 42 chr1 120599059 120599203 -76596229 + B4A SINE B4 1 140 -152 2 1505 306 0 0 0 chr1 120599269 120599303 -76596129 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1505 243 0 0 0 chr1 120599661 120599688 -76595744 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1505 298 250 55 14 chr1 120599714 120599787 -76595645 - B4A SINE B4 -42 250 175 2 1505 234 295 0 47 chr1 120599944 120600008 -76595424 - B4 SINE B4 -103 189 129 2 1505 236 284 15 0 chr1 120600255 120600322 -76595110 + MIRc SINE MIR 71 138 -130 2 1505 947 265 47 43 chr1 120600476 120600732 -76594700 + B4 SINE B4 5 261 -31 2 1505 243 133 0 0 chr1 120601149 120601194 -76594238 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 2 1505 1140 82 7 0 chr1 120601214 120601360 -76594072 - B1_Mm SINE Alu 0 147 1 2 1505 1142 273 93 39 chr1 120601361 120601716 -76593716 - MTEa LTR MaLR -5 374 1 2 1505 261 276 121 0 chr1 120601827 120601885 -76593547 + ID4 SINE ID 17 81 -2 2 1505 483 48 0 0 chr1 120601904 120601966 -76593466 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1505 690 288 7 7 chr1 120601966 120602120 -76593312 - B3A SINE B2 -44 154 1 2 1505 619 201 0 0 chr1 120602277 120602391 -76593041 + B1F1 SINE Alu 1 114 -6 2 1505 734 219 110 123 chr1 120602397 120602528 -76592904 + ID_B1 SINE B4 3 145 -79 3 1505 3663 63 40 0 chr1 120602528 120603001 -76592431 + L1_Mus3 LINE L1 6130 6621 -17 3 1505 380 37 19 0 chr1 120603001 120603055 -76592377 + (TAA)n Simple_repeat Simple_repeat 3 57 0 3 1505 734 219 110 123 chr1 120603055 120603067 -76592365 + ID_B1 SINE B4 146 146 -78 3 1505 1407 98 0 15 chr1 120603067 120603263 -76592169 + B2_Mm2 SINE B2 1 193 -2 3 1505 734 219 110 123 chr1 120603263 120603336 -76592096 + ID_B1 SINE B4 146 217 -7 3 1505 304 325 0 0 chr1 120603515 120603595 -76591837 - ID4 SINE ID -2 81 2 3 1505 831 309 80 22 chr1 120604074 120604349 -76591083 - B4 SINE B4 0 292 2 3 1505 1022 231 64 41 chr1 120604376 120604719 -76590713 + RLTR15 LTR ERVK 1 351 -8 3 1505 529 245 9 0 chr1 120604723 120604829 -76590603 - ID_B1 SINE B4 -15 209 103 3 1505 414 0 0 0 chr1 120604829 120604875 -76590557 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1505 352 335 59 18 chr1 120604899 120605069 -76590363 - LTR50 LTR ERVL -89 706 530 3 1505 2429 151 11 44 chr1 120605104 120605539 -76589893 + MTC LTR MaLR 1 421 0 3 1505 510 79 0 0 chr1 120605546 120605622 -76589810 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1505 292 369 0 8 chr1 120606268 120606372 -76589060 + CT-rich Low_complexity Low_complexity 23 125 0 3 1505 921 19 0 0 chr1 120606372 120606479 -76588953 + (TTC)n Simple_repeat Simple_repeat 1 107 0 3 1505 292 369 0 8 chr1 120606479 120606497 -76588935 + polypyrimidine Low_complexity Low_complexity 5 22 0 3 1505 359 333 0 0 chr1 120606502 120606613 -76588819 - PB1D7 SINE Alu 0 120 10 3 1505 249 333 0 75 chr1 120606524 120606631 -76588801 - ID_B1 SINE B4 -48 176 78 3 1505 234 0 0 0 chr1 120606667 120606693 -76588739 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1505 258 200 22 0 chr1 120606739 120606784 -76588648 - ID_B1 SINE B4 -99 125 80 3 1505 921 276 5 0 chr1 120606810 120607006 -76588426 - ID_B1 SINE B4 -21 203 7 3 1505 484 273 145 51 chr1 120607109 120607364 -76588068 - B4A SINE B4 -11 281 3 3 1505 777 51 0 0 chr1 120607583 120607681 -76587751 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 3 1505 801 280 161 16 chr1 120607735 120607989 -76587443 - B4 SINE B4 0 292 2 3 1505 388 223 81 0 chr1 120608668 120608767 -76586665 + B4A SINE B4 1 106 -186 3 1505 687 299 51 0 chr1 120608806 120609003 -76586429 + ID_B1 SINE B4 2 208 -16 3 1505 533 77 22 0 chr1 120609004 120609095 -76586337 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 3 1505 250 274 0 0 chr1 120609097 120609148 -76586284 + G-rich Low_complexity Low_complexity 1 51 0 3 1505 236 313 149 11 chr1 120609152 120609414 -76586018 + L1MEc LINE L1 53 350 -6050 3 1505 933 239 31 24 chr1 120609955 120610224 -76585208 + B4A SINE B4 5 266 -26 3 1505 866 168 13 0 chr1 120610248 120610411 -76585021 - MTC LTR MaLR -89 330 155 3 1505 849 93 0 17 chr1 120610411 120610531 -76584901 + B1_Mus1 SINE Alu 31 148 0 3 1505 602 246 8 0 chr1 120610530 120610656 -76584776 - MTC LTR MaLR -292 127 1 3 1505 254 200 0 0 chr1 120610656 120610703 -76584729 + B4 SINE B4 246 292 0 3 1505 385 239 14 0 chr1 120610703 120610841 -76584591 + (CA)n Simple_repeat Simple_repeat 1 140 0 3 1505 251 54 27 0 chr1 120610854 120610891 -76584541 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1505 1287 34 0 0 chr1 120610894 120611040 -76584392 + B1_Mm SINE Alu 2 147 0 3 1505 2215 176 294 12 chr1 120611090 120611665 -76583767 + RMER19A LTR ERVK 1 737 0 3 1505 258 257 7 2 chr1 120611853 120611927 -76583505 + L1MEc LINE L1 4806 4876 -1443 3 1505 303 241 50 12 chr1 120611927 120612007 -76583425 + ID4_ SINE ID 1 83 0 3 1505 225 263 131 33 chr1 120612007 120612054 -76583378 + L1MEc LINE L1 4877 4939 -1380 3 1505 273 29 0 0 chr1 120612202 120612236 -76583196 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1505 867 219 22 0 chr1 120612257 120612435 -76582997 + ORR1E LTR MaLR 132 313 -46 3 1505 1896 295 123 5 chr1 120612515 120613101 -76582331 - MTE-int LTR MaLR -365 1215 561 3 1505 325 315 37 0 chr1 120613124 120613232 -76582200 - MTE-int LTR MaLR -1371 209 98 3 1505 460 222 40 10 chr1 120613220 120613320 -76582112 + B4A SINE B4 115 217 -75 3 1505 403 63 32 0 chr1 120613332 120613395 -76582037 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1505 423 0 0 0 chr1 120613537 120613584 -76581848 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1505 828 246 25 79 chr1 120613631 120613834 -76581598 + B3A SINE B2 1 192 -6 3 1505 337 250 0 0 chr1 120613887 120613951 -76581481 + B1_Mur1 SINE Alu 81 144 -5 3 1505 243 173 0 0 chr1 120613951 120614003 -76581429 + GA-rich Low_complexity Low_complexity 3 54 0 3 1505 186 43 0 0 chr1 120614099 120614122 -76581310 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 3 1505 589 256 108 0 chr1 120614143 120614272 -76581160 - RSINE1 SINE B4 -22 143 1 3 1505 577 317 7 7 chr1 120614351 120614494 -76580938 - RSINE1 SINE B4 -20 145 3 3 1505 403 236 249 49 chr1 120615229 120615434 -76579998 - RMER15 LTR ERVL 0 575 330 3 1505 516 187 0 0 chr1 120615712 120615835 -76579597 + CT-rich Low_complexity Low_complexity 1 123 0 3 1505 303 233 0 16 chr1 120615837 120615898 -76579534 - ID_B1 SINE B4 -14 210 151 3 1505 401 264 23 33 chr1 120615896 120616044 -76579388 - B3 SINE B2 -5 190 44 3 1505 378 0 0 0 chr1 120616044 120616086 -76579346 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1505 210 100 120 0 chr1 120616086 120616136 -76579296 + (CCAA)n Simple_repeat Simple_repeat 4 59 0 3 1505 704 264 13 0 chr1 120616180 120616335 -76579097 - ID_B1 SINE B4 -67 157 1 3 1505 629 207 62 41 chr1 120617019 120617165 -76578267 + ID_B1 SINE B4 76 224 0 3 1505 218 399 29 22 chr1 120617331 120617467 -76577965 - L2a LINE L2 -1 3425 3289 3 1505 494 284 113 0 chr1 120617467 120617661 -76577771 + ID_B1 SINE B4 2 217 -7 3 1505 408 278 0 0 chr1 120617738 120617828 -76577604 + 5S rRNA rRNA 1 90 -31 3 1505 489 308 25 13 chr1 120618233 120618391 -76577041 - RSINE1 SINE B4 -1 164 5 3 1505 1233 257 14 120 chr1 120618392 120618816 -76576616 + MTE2a LTR MaLR 1 379 0 3 1505 312 270 161 9 chr1 120618823 120618935 -76576497 + MIRb SINE MIR 95 223 -45 3 1505 932 243 104 0 chr1 120618989 120619211 -76576221 + MER2 DNA MER2_type 15 259 -86 3 1505 468 0 0 0 chr1 120619219 120619271 -76576161 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1505 885 237 124 8 chr1 120619273 120619507 -76575925 - B4 SINE B4 -18 274 14 3 1505 876 155 28 7 chr1 120619650 120619793 -76575639 - B1_Mm SINE Alu -1 146 1 3 1505 702 281 116 11 chr1 120620351 120620561 -76574871 - ID_B1 SINE B4 -46 246 28 3 1505 659 289 65 35 chr1 120620534 120620672 -76574760 + B4 SINE B4 83 227 -65 3 1505 1053 249 80 63 chr1 120620672 120621036 -76574396 - ORR1D2 LTR MaLR 0 370 1 3 1505 659 289 65 35 chr1 120621036 120621098 -76574334 + B4 SINE B4 228 288 -4 3 1505 229 172 0 30 chr1 120621119 120621185 -76574247 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1505 342 148 0 0 chr1 120621202 120621256 -76574176 + HAL1-3A_ME LINE L1 1976 2029 -829 3 1505 1588 42 11 0 chr1 120621783 120621972 -76573460 - B2_Mm1t SINE B2 -1 192 2 3 1505 665 220 28 21 chr1 120622240 120622384 -76573048 + MTEa LTR MaLR 175 319 -60 3 1505 801 250 9 56 chr1 120622484 120622700 -76572732 - B3 SINE B2 -4 212 7 3 1505 180 0 0 0 chr1 120622721 120622741 -76572691 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 3 1505 329 307 68 79 chr1 120623025 120623202 -76572230 + MTEa LTR MaLR 202 376 -3 3 1505 273 235 48 36 chr1 120623668 120623752 -76571680 - ID_B1 SINE B4 -84 140 56 3 1505 420 253 6 36 chr1 120624064 120624232 -76571200 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1505 533 15 15 0 chr1 120624382 120624448 -76570984 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1505 271 65 43 0 chr1 120624809 120624855 -76570577 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 3 1505 262 267 13 13 chr1 120624856 120624932 -76570500 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1505 449 294 120 62 chr1 120624932 120625208 -76570224 - B4A SINE B4 0 292 1 3 1505 908 229 36 5 chr1 120625606 120625799 -76569633 + ID_B1 SINE B4 2 200 -24 3 1505 244 271 127 14 chr1 120626756 120626827 -76568605 - RSINE1 SINE B4 -85 80 2 3 1505 223 238 96 149 chr1 120627092 120627186 -76568246 - PB1D10 SINE Alu -28 89 1 3 1505 377 333 98 0 chr1 120627186 120627265 -76568167 - B4A SINE B4 -198 94 3 3 1505 678 25 0 0 chr1 120627775 120627855 -76567577 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 3 1505 7481 70 1 9 chr1 120628332 120629288 -76566144 - Lx3_Mus LINE L1 0 7009 6062 3 1505 915 236 9 56 chr1 120629475 120629596 -76565836 - B3 SINE B2 -10 206 89 3 1505 1430 71 5 10 chr1 120629596 120629795 -76565637 + L1Md_F2 LINE L1 6372 6569 -13 3 1505 915 236 9 56 chr1 120629795 120629888 -76565544 - B3 SINE B2 -128 88 2 3 1505 704 231 64 40 chr1 120629927 120630250 -76565182 + ORR1D2 LTR MaLR 7 370 0 3 1505 404 252 101 0 chr1 120630504 120630603 -76564829 + PB1D7 SINE Alu 12 120 0 3 1505 233 316 0 0 chr1 120630603 120630701 -76564731 + A-rich Low_complexity Low_complexity 1 98 0 3 1505 384 253 0 44 chr1 120630948 120631039 -76564393 + RSINE1 SINE B4 9 95 -70 3 1505 213 39 0 0 chr1 120631213 120631239 -76564193 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 1505 471 78 0 0 chr1 120631239 120631303 -76564129 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 1505 217 254 0 0 chr1 120631329 120631384 -76564048 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 3 1505 210 37 0 0 chr1 120631550 120631577 -76563855 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1505 1297 68 0 0 chr1 120631580 120631741 -76563691 - B2_Mm2 SINE B2 -34 161 1 3 1505 250 250 0 95 chr1 120632107 120632191 -76563241 + B4A SINE B4 217 292 0 3 1505 381 216 0 0 chr1 120632207 120632341 -76563091 + (CA)n Simple_repeat Simple_repeat 1 134 0 3 1505 330 71 0 0 chr1 120632358 120632400 -76563032 + HAL1-3A_ME LINE L1 1977 2018 -840 3 1505 242 241 0 94 chr1 120632492 120632556 -76562876 - RSINE1 SINE B4 0 165 108 4 1505 489 229 217 51 chr1 120632524 120632589 -76562843 - B4 SINE B4 -8 284 224 4 1505 306 0 0 0 chr1 120632589 120632623 -76562809 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1505 529 172 118 0 chr1 120632623 120632716 -76562716 - PB1D9 SINE Alu -9 111 8 4 1505 489 229 217 51 chr1 120632716 120632732 -76562700 - B4 SINE B4 -69 223 83 4 1505 580 264 52 0 chr1 120632721 120632876 -76562556 - B4 SINE B4 -64 228 66 4 1505 787 246 95 16 chr1 120632992 120633182 -76562250 - ID_B1 SINE B4 -8 216 12 4 1505 388 253 0 25 chr1 120633755 120633836 -76561596 + ID SINE ID 4 82 -142 4 1505 200 182 0 0 chr1 120634000 120634033 -76561399 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1505 1204 213 61 15 chr1 120634090 120634352 -76561080 - B4 SINE B4 -18 274 1 4 1505 226 307 0 43 chr1 120634516 120634608 -76560824 - L1ME1 LINE L1 -190 5989 5902 4 1505 477 0 0 0 chr1 120634681 120634734 -76560698 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1505 243 0 0 0 chr1 120634734 120634760 -76560672 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1505 2507 147 14 33 chr1 120634761 120635182 -76560250 - MTC LTR MaLR -8 413 1 4 1505 612 261 57 32 chr1 120635197 120635355 -76560077 - RSINE1 SINE B4 0 165 4 4 1505 348 208 11 125 chr1 120635901 120635989 -76559443 - B4 SINE B4 0 292 215 4 1505 669 245 11 82 chr1 120635992 120636143 -76559289 - B3A SINE B2 0 195 78 4 1505 2359 72 28 25 chr1 120636143 120636469 -76558963 + IAPLTR2b LTR ERVK 1 327 0 4 1505 669 243 11 65 chr1 120636469 120636527 -76558905 - B3A SINE B2 -121 77 19 4 1505 357 195 207 0 chr1 120636619 120636706 -76558726 - B4 SINE B4 -174 118 14 4 1505 217 293 80 0 chr1 120636642 120636717 -76558715 - ID2 SINE ID -1 82 2 4 1505 411 251 71 12 chr1 120637377 120637546 -76557886 + (CAGG)n Simple_repeat Simple_repeat 1 179 0 4 1505 925 159 0 25 chr1 120637486 120637647 -76557785 + (CAGAGA)n Simple_repeat Simple_repeat 2 158 0 4 1505 866 264 26 60 chr1 120638216 120638518 -76556914 + B4A SINE B4 1 292 0 4 1505 304 273 89 18 chr1 120638813 120638925 -76556507 - L1ME4a LINE L1 -6 6118 5999 4 1505 275 287 147 54 chr1 120639017 120639050 -76556382 - B3 SINE B2 -11 205 5 4 1505 754 200 66 7 chr1 120639050 120639201 -76556231 - RSINE1 SINE B4 0 165 6 4 1505 294 237 105 0 chr1 120639275 120639351 -76556081 + ID SINE ID 1 84 -140 4 1505 222 229 0 116 chr1 120639369 120639399 -76556033 + ID4_ SINE ID 1 29 -54 4 1505 3430 131 219 5 chr1 120639399 120640006 -76555426 + RMER19A LTR ERVK 1 737 0 4 1505 222 229 0 116 chr1 120640006 120640044 -76555388 + ID4_ SINE ID 30 61 -22 4 1505 1615 209 64 39 chr1 120640077 120640435 -76554997 + MTE2b LTR MaLR 9 375 -4 4 1505 1190 82 0 0 chr1 120640474 120640621 -76554811 - B1_Mus1 SINE Alu 0 148 2 4 1505 2198 190 15 25 chr1 120640662 120641062 -76554370 - MTC LTR MaLR -8 413 18 4 1505 713 186 104 48 chr1 120641180 120641373 -76554059 + B3A SINE B2 1 200 -16 4 1505 204 182 0 0 chr1 120641374 120641418 -76554014 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1505 378 348 26 0 chr1 120641539 120641654 -76553778 + ID_B1 SINE B4 2 119 -105 4 1505 266 299 163 7 chr1 120641688 120641823 -76553609 + ID_B1 SINE B4 67 222 -2 4 1505 267 320 31 10 chr1 120642018 120642116 -76553316 - MER67A LTR ERV1 -442 101 2 4 1505 327 328 87 16 chr1 120642254 120642437 -76552995 - MLT1C LTR MaLR -72 395 200 4 1505 447 92 0 0 chr1 120644006 120644071 -76551361 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1505 896 249 10 25 chr1 120644087 120644289 -76551143 - B4 SINE B4 -18 274 76 4 1505 282 306 0 0 chr1 120644510 120644582 -76550850 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1505 574 274 168 0 chr1 120644931 120645121 -76550311 - ID_B1 SINE B4 0 224 3 4 1505 433 291 54 0 chr1 120645630 120645778 -76549654 + RSINE1 SINE B4 3 158 -7 4 1505 485 342 6 26 chr1 120645830 120645974 -76549458 + B4 SINE B4 72 214 -78 4 1505 1023 158 96 0 chr1 120645974 120646151 -76549281 + B2_Mm2 SINE B2 2 195 0 4 1505 423 378 23 17 chr1 120646151 120646181 -76549251 + B4A SINE B4 216 246 -46 4 1505 423 56 0 0 chr1 120646183 120646237 -76549195 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 4 1505 206 301 13 27 chr1 120646299 120646374 -76549058 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 4 1505 625 281 20 7 chr1 120646388 120646535 -76548897 + RSINE1 SINE B4 2 150 -15 4 1505 274 308 0 60 chr1 120647244 120647327 -76548105 - B4 SINE B4 0 292 215 4 1505 375 239 11 22 chr1 120647363 120647453 -76547979 - B4 SINE B4 -203 89 1 4 1505 532 293 29 87 chr1 120647568 120647774 -76547658 - B4A SINE B4 -96 196 3 4 1505 935 246 37 0 chr1 120648124 120648315 -76547117 - ID_B1 SINE B4 -26 198 1 4 1505 1092 133 0 0 chr1 120648742 120648922 -76546510 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1505 436 82 27 14 chr1 120648922 120648996 -76546436 + (GGAGAA)n Simple_repeat Simple_repeat 4 78 0 4 1505 386 275 33 60 chr1 120649106 120649257 -76546175 + B1_Mus1 SINE Alu 2 148 0 4 1505 677 204 16 12 chr1 120649135 120649264 -76546168 + ID_B1 SINE B4 103 232 -60 4 1505 263 204 41 0 chr1 120649264 120649313 -76546119 + B4 SINE B4 1 51 -241 4 1505 954 266 13 9 chr1 120649557 120649785 -76545647 + B4A SINE B4 1 229 -63 4 1505 511 319 99 0 chr1 120649797 120649938 -76545494 + RSINE1 SINE B4 11 165 0 4 1505 195 100 0 0 chr1 120649946 120649976 -76545456 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1505 207 0 0 0 chr1 120649980 120650003 -76545429 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1505 342 0 0 0 chr1 120650101 120650139 -76545293 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1505 234 0 0 0 chr1 120650139 120650164 -76545268 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1505 799 92 108 65 chr1 120650322 120650445 -76544987 + B1_Mur4 SINE Alu 6 141 -9 4 1505 408 40 0 0 chr1 120650445 120650495 -76544937 + (CAA)n Simple_repeat Simple_repeat 1 50 0 4 1505 246 62 0 0 chr1 120650498 120650530 -76544902 + (CAGAA)n Simple_repeat Simple_repeat 1 32 0 4 1505 799 92 108 65 chr1 120650530 120650541 -76544891 + B1_Mur4 SINE Alu 142 150 0 4 1505 336 287 33 17 chr1 120650539 120650661 -76544771 + B1F SINE Alu 1 116 -1 4 1505 246 62 0 0 chr1 120651109 120651141 -76544291 + (CACCAT)n Simple_repeat Simple_repeat 1 32 0 4 1505 1187 212 14 82 chr1 120651210 120651409 -76544023 - B4A SINE B4 -18 274 89 4 1505 1316 100 10 10 chr1 120651409 120651601 -76543831 - B2_Mm1t SINE B2 0 193 2 4 1505 1187 212 14 82 chr1 120651601 120651694 -76543738 - B4A SINE B4 -204 88 2 4 1505 362 284 9 18 chr1 120651728 120651839 -76543593 + PB1D7 SINE Alu 1 110 -10 4 1505 786 141 0 0 chr1 120651839 120651995 -76543437 + (CA)n Simple_repeat Simple_repeat 1 156 0 4 1505 761 167 8 0 chr1 120652034 120652281 -76543151 + (CA)n Simple_repeat Simple_repeat 1 249 0 4 1505 224 208 42 0 chr1 120652342 120652438 -76542994 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1505 442 212 30 0 chr1 120652450 120652615 -76542817 + (TG)n Simple_repeat Simple_repeat 1 170 0 4 1505 560 250 74 68 chr1 120652627 120652790 -76542642 - RSINE1 SINE B4 -1 164 1 4 1505 860 253 47 0 chr1 120653593 120653783 -76541649 - ID_B1 SINE B4 -21 203 5 4 1505 347 158 60 50 chr1 120653813 120653913 -76541519 - Lx8 LINE L1 -4 7469 7369 4 1505 522 46 0 0 chr1 120653928 120653993 -76541439 + (TCC)n Simple_repeat Simple_repeat 3 67 0 4 1505 314 204 137 39 chr1 120653995 120654097 -76541335 - RMER1C Other Other -155 1187 1076 4 1505 1784 251 22 9 chr1 120654017 120654471 -76540961 - Lx8 LINE L1 -194 7279 6820 4 1505 772 279 157 7 chr1 120655211 120655510 -76539922 - MTEb LTR MaLR -16 363 20 4 1505 252 285 64 71 chr1 120655494 120655634 -76539798 + MTD LTR MaLR 14 152 -267 4 1505 191 88 0 29 chr1 120656499 120656534 -76538898 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1505 504 348 37 5 chr1 120656578 120656766 -76538666 - B4A SINE B4 -12 280 87 4 1505 359 257 72 119 chr1 120656828 120656851 -76538581 - B2_Mm2 SINE B2 -10 185 165 4 1505 315 0 0 0 chr1 120656851 120656886 -76538546 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1505 596 246 129 21 chr1 120656886 120657056 -76538376 - B3A SINE B2 -22 176 1 4 1505 1051 257 151 0 chr1 120657118 120657437 -76537995 - ORR1D2 LTR MaLR -2 368 2 4 1505 252 175 0 0 chr1 120657645 120657708 -76537724 + CT-rich Low_complexity Low_complexity 2 64 0 4 1505 516 266 53 0 chr1 120657728 120657841 -76537591 - B1_Mur2 SINE Alu -25 124 6 4 1505 829 211 0 0 chr1 120657938 120658080 -76537352 - B1_Mur2 SINE Alu -6 143 2 4 1505 231 260 0 0 chr1 120658341 120658391 -76537041 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1505 680 252 48 0 chr1 120658391 120658538 -76536894 - RSINE1 SINE B4 0 165 12 4 1505 285 311 109 0 chr1 120658589 120658708 -76536724 - MER77 LTR ERVL -253 354 223 4 1505 261 0 0 0 chr1 120658773 120658802 -76536630 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1505 471 141 0 0 chr1 120658802 120658880 -76536552 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1505 1291 251 14 0 chr1 120658894 120659173 -76536259 + MTEb LTR MaLR 75 357 -22 4 1505 619 246 84 103 chr1 120659177 120659558 -76535874 - MTD LTR MaLR -13 406 69 4 1505 270 0 0 0 chr1 120659558 120659588 -76535844 + L1_Mm LINE L1 5538 5567 -316 4 1505 287 173 60 107 chr1 120659588 120659607 -76535825 - MTD LTR MaLR -304 92 76 4 1505 8591 32 1 0 chr1 120659607 120660602 -76534830 + L1Md_T LINE L1 5587 6582 0 4 1505 454 135 27 0 chr1 120660602 120660676 -76534756 - MTD LTR MaLR -343 76 1 4 1505 688 244 83 6 chr1 120660749 120660906 -76534526 - B3A SINE B2 -28 170 2 4 1505 1974 134 51 60 chr1 120661137 120661342 -76534090 - RMER17C LTR ERVK 0 410 189 4 1505 524 15 0 15 chr1 120661342 120661408 -76534024 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1505 1974 134 51 60 chr1 120661408 120661616 -76533816 - RMER17C LTR ERVK -222 188 2 4 1505 476 297 0 48 chr1 120661755 120661879 -76533553 - B4 SINE B4 -173 119 2 4 1505 825 236 68 15 chr1 120661886 120662092 -76533340 - ID_B1 SINE B4 -6 218 2 4 1505 488 253 46 33 chr1 120662651 120662802 -76532630 - RSINE1 SINE B4 -11 154 2 4 1505 251 266 129 85 chr1 120663214 120663485 -76531947 + RMER10A LTR ERVL 18 300 -142 4 1505 261 268 71 35 chr1 120663598 120663683 -76531749 + RMER10A LTR ERVL 327 414 -28 4 1505 612 289 121 0 chr1 120663689 120663855 -76531577 - B3A SINE B2 -12 186 1 5 1505 397 267 0 0 chr1 120663863 120663938 -76531494 - ID_B1 SINE B4 -8 216 142 5 1505 1079 246 133 0 chr1 120665286 120665542 -76529890 + B4 SINE B4 1 290 -2 5 1505 359 226 0 0 chr1 120666846 120666908 -76528524 + MIR SINE MIR 201 262 0 5 1505 458 252 0 29 chr1 120667078 120667180 -76528252 + B4 SINE B4 7 105 -187 5 1505 471 176 0 0 chr1 120667303 120667394 -76528038 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 1505 353 281 60 17 chr1 120667784 120667900 -76527532 + MT2A LTR ERVL 1 121 -412 5 1505 1221 252 93 0 chr1 120667798 120668099 -76527333 + MTE2b LTR MaLR 20 348 -31 5 1505 394 258 32 0 chr1 120668322 120668415 -76527017 - PB1D10 SINE Alu -12 105 10 5 1505 741 250 18 12 chr1 120668334 120668504 -76526928 - ID_B1 SINE B4 -52 172 2 5 1505 1123 155 130 0 chr1 120668519 120668719 -76526713 - URR1A DNA MER1_type 0 226 1 5 1505 288 0 0 0 chr1 120669246 120669278 -76526154 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1505 448 242 110 37 chr1 120669550 120669713 -76525719 - Lx8 LINE L1 -146 7327 7153 5 1505 1107 245 58 62 chr1 120669840 120670132 -76525300 + B4A SINE B4 2 292 0 5 1505 314 204 11 0 chr1 120670143 120670231 -76525201 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1505 304 194 16 31 chr1 120670294 120670358 -76525074 + HAL1-3A_ME LINE L1 1975 2037 -821 5 1505 282 29 0 0 chr1 120670570 120670605 -76524827 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1505 438 20 0 0 chr1 120670607 120670658 -76524774 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 5 1505 273 57 0 0 chr1 120672080 120672115 -76523317 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1505 874 250 17 68 chr1 120672117 120672353 -76523079 + B4 SINE B4 2 225 -67 5 1505 802 276 76 32 chr1 120672482 120672759 -76522673 + B4A SINE B4 3 291 -1 5 1505 189 255 35 7 chr1 120672822 120672964 -76522468 + (CA)n Simple_repeat Simple_repeat 1 146 0 5 1505 292 224 15 15 chr1 120672966 120673034 -76522398 + B4 SINE B4 210 277 -15 5 1505 378 0 0 0 chr1 120673044 120673086 -76522346 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1505 468 229 0 0 chr1 120673777 120673943 -76521489 + (TG)n Simple_repeat Simple_repeat 1 166 0 5 1505 275 96 37 37 chr1 120674265 120674319 -76521113 - B3 SINE B2 -162 54 1 5 1505 339 236 69 0 chr1 120674329 120674401 -76521031 - RMER30 DNA MER1_type -121 81 5 5 1505 536 272 182 30 chr1 120674706 120674937 -76520495 + B4 SINE B4 2 267 -25 5 1505 207 217 0 0 chr1 120674969 120675029 -76520403 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1505 371 111 0 18 chr1 120675055 120675110 -76520322 + HAL1-3A_ME LINE L1 1976 2029 -829 5 1505 747 0 0 0 chr1 120675984 120676067 -76519365 + (TTC)n Simple_repeat Simple_repeat 1 83 0 5 1505 241 290 120 106 chr1 120676076 120676114 -76519318 + RLTR26 LTR ERVK 1 29 -877 5 1505 2374 102 6 3 chr1 120676114 120676440 -76518992 + ORR1A2 LTR MaLR 1 327 0 5 1505 552 316 95 80 chr1 120676440 120676827 -76518605 + RLTR26 LTR ERVK 30 441 -201 5 1505 242 356 19 19 chr1 120677040 120677143 -76518289 - B4A SINE B4 -189 103 1 5 1505 589 259 131 12 chr1 120677482 120677837 -76517595 + RMER1B Other Other 163 828 -514 5 1505 947 221 69 4 chr1 120677870 120678115 -76517317 + RMER1C Other Other 1063 1323 -19 5 1505 561 30 0 0 chr1 120678115 120678182 -76517250 + (CTAA)n Simple_repeat Simple_repeat 3 69 0 5 1505 827 276 39 149 chr1 120678384 120678665 -76516767 - B4 SINE B4 -5 287 38 5 1505 389 255 21 0 chr1 120679148 120679242 -76516190 + B4 SINE B4 1 96 -196 5 1505 4074 64 32 0 chr1 120679242 120679936 -76515496 - L1_Mus3 LINE L1 -591 5975 5267 5 1505 5230 50 17 0 chr1 120679936 120680643 -76514789 + L1_Mus3 LINE L1 5980 6638 0 5 1505 332 190 132 12 chr1 120680643 120680736 -76514696 + B4 SINE B4 86 188 -104 5 1505 943 229 6 6 chr1 120680756 120680936 -76514496 + B3A SINE B2 3 182 -16 5 1505 1131 239 91 0 chr1 120680964 120681273 -76514159 + Lx8 LINE L1 6403 6739 -734 5 1505 2114 181 34 29 chr1 120681323 120681738 -76513694 + MTD LTR MaLR 1 417 -2 5 1505 256 342 25 8 chr1 120681738 120681859 -76513573 + Lx8 LINE L1 6768 6890 -583 5 1505 642 212 0 22 chr1 120681876 120682059 -76513373 + (CATA)n Simple_repeat Simple_repeat 1 179 0 5 1505 456 250 0 0 chr1 120682039 120682199 -76513233 + (CA)n Simple_repeat Simple_repeat 2 161 0 5 1505 198 273 6 38 chr1 120682621 120682804 -76512628 + GA-rich Low_complexity Low_complexity 3 179 0 5 1505 198 71 0 0 chr1 120682775 120682803 -76512629 + (GGGAA)n Simple_repeat Simple_repeat 5 32 0 5 1505 212 167 0 0 chr1 120682917 120682959 -76512473 + (CAGAGA)n Simple_repeat Simple_repeat 3 44 0 5 1505 371 272 30 53 chr1 120683479 120683611 -76511821 - MER117 DNA MER1_type -12 185 57 5 1505 354 331 43 36 chr1 120683638 120683776 -76511656 - MER117 DNA MER1_type -2 195 57 5 1505 670 263 126 40 chr1 120687007 120687198 -76508234 + B4A SINE B4 2 209 -83 5 1505 1832 177 19 29 chr1 120687198 120687579 -76507853 - ORR1A4 LTR MaLR 0 394 4 5 1505 357 24 0 0 chr1 120687585 120687627 -76507805 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1505 252 0 0 0 chr1 120687627 120687654 -76507778 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1505 905 142 13 13 chr1 120687669 120687826 -76507606 - ORR1D1 LTR MaLR -210 164 8 5 1505 881 272 32 29 chr1 120688920 120688944 -76506488 - B4A SINE B4 0 292 269 5 1505 450 53 0 0 chr1 120688944 120689001 -76506431 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1505 881 272 32 29 chr1 120689001 120689222 -76506210 - B4A SINE B4 -24 268 46 5 1505 285 300 116 36 chr1 120689242 120689543 -76505889 - L1MB5 LINE L1 -33 6141 5817 5 1505 947 233 11 40 chr1 120689961 120690281 -76505151 + RLTR20C LTR ERVK 52 475 -103 5 1505 360 0 0 0 chr1 120690288 120690328 -76505104 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1505 713 220 42 7 chr1 120690521 120690663 -76504769 - B1_Mur1 SINE Alu 0 149 3 5 1505 266 319 16 101 chr1 120690718 120690847 -76504585 - B4A SINE B4 -173 119 2 5 1505 809 265 105 17 chr1 120690847 120690989 -76504443 - B4A SINE B4 -60 232 77 5 1505 298 55 0 68 chr1 120690989 120691048 -76504384 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 5 1505 809 265 105 17 chr1 120691048 120691116 -76504316 - B4A SINE B4 -216 76 2 5 1505 1158 101 0 0 chr1 120691444 120691592 -76503840 + B1_Mus1 SINE Alu 1 148 0 5 1505 248 0 31 0 chr1 120691592 120691624 -76503808 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1505 380 123 0 0 chr1 120691831 120691888 -76503544 + MIR SINE MIR 71 127 -135 5 1505 247 239 27 95 chr1 120692985 120693003 -76502429 - B4A SINE B4 0 292 279 5 1505 357 84 28 14 chr1 120693003 120693075 -76502357 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1505 247 239 27 95 chr1 120693075 120693130 -76502302 - B4A SINE B4 -14 278 224 5 1505 540 227 208 30 chr1 120693160 120693328 -76502104 - B3A SINE B2 0 198 1 5 1505 1009 265 13 21 chr1 120693328 120693560 -76501872 - B4A SINE B4 -62 230 1 5 1505 1488 239 26 0 chr1 120693745 120694055 -76501377 + ORR1E LTR MaLR 2 319 -40 5 1505 1052 308 0 43 chr1 120694163 120694462 -76500970 + B4 SINE B4 2 287 -5 5 1505 330 316 119 12 chr1 120694614 120694774 -76500658 - MER3 DNA MER1_type -28 181 5 5 1505 359 298 76 34 chr1 120694857 120694975 -76500457 - B4 SINE B4 -169 123 1 5 1505 348 312 154 31 chr1 120695222 120695384 -76500048 + B4 SINE B4 107 288 -4 5 1505 503 317 14 14 chr1 120695510 120695654 -76499778 + ID_B1 SINE B4 80 223 -1 5 1505 620 267 82 24 chr1 120695659 120695866 -76499566 + ID_B1 SINE B4 4 222 -2 5 1505 311 96 0 19 chr1 120696643 120696677 -76498755 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1505 744 94 0 0 chr1 120696677 120696783 -76498649 + (TCC)n Simple_repeat Simple_repeat 1 106 0 5 1505 311 96 0 19 chr1 120696783 120696801 -76498631 + (TC)n Simple_repeat Simple_repeat 2 19 0 5 1505 1034 212 21 69 chr1 120696805 120697038 -76498394 - ID_B1 SINE B4 -2 222 1 5 1505 681 291 84 16 chr1 120697249 120697500 -76497932 - RMER15 LTR ERVL -33 542 275 5 1505 1733 186 6 25 chr1 120697629 120697949 -76497483 + MTD LTR MaLR 3 316 -103 5 1505 689 212 48 12 chr1 120697987 120698154 -76497278 - B3 SINE B2 0 216 44 5 1505 250 253 45 57 chr1 120698145 120698233 -76497199 + MTD LTR MaLR 279 365 -5 5 1505 332 94 19 0 chr1 120698677 120698730 -76496702 + (CAAT)n Simple_repeat Simple_repeat 2 55 0 5 1505 428 252 126 0 chr1 120698747 120698866 -76496566 - Charlie12 DNA MER1_type -2739 134 1 5 1505 609 286 144 35 chr1 120699199 120699456 -76495976 - B4A SINE B4 0 292 8 5 1505 475 328 147 46 chr1 120699582 120699829 -76495603 - MER2 DNA MER2_type -7 338 70 5 1505 407 19 19 0 chr1 120699829 120699881 -76495551 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 5 1505 475 328 147 46 chr1 120699881 120699940 -76495492 - MER2 DNA MER2_type -276 69 1 5 1505 668 266 21 119 chr1 120699947 120700182 -76495250 + ID_B1 SINE B4 11 222 -2 5 1505 732 245 7 0 chr1 120700209 120700356 -76495076 + B3 SINE B2 1 148 -68 5 1505 402 21 0 0 chr1 120700356 120700403 -76495029 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1505 709 263 95 0 chr1 120700403 120700434 -76494998 + B3A SINE B2 151 194 -4 5 1505 360 0 0 0 chr1 120701809 120701849 -76493583 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1505 551 309 115 4 chr1 120702086 120702346 -76493086 - B4A SINE B4 -2 290 2 5 1505 254 322 0 0 chr1 120702383 120702442 -76492990 + tRNA-Ala-GCY_ tRNA tRNA 8 66 -9 5 1505 306 274 0 0 chr1 120702593 120702666 -76492766 - B4 SINE B4 -219 73 1 5 1505 912 134 0 0 chr1 120703444 120703615 -76491817 + (GTGTG)n Simple_repeat Simple_repeat 5 175 0 5 1505 811 226 198 12 chr1 120703663 120703905 -76491527 - B4 SINE B4 -4 288 2 5 1505 678 282 155 12 chr1 120704352 120704603 -76490829 + RMER15 LTR ERVL 275 561 -14 5 1505 669 230 70 25 chr1 120704792 120704993 -76490439 - Lx9 LINE L1 -290 7354 7145 5 1505 417 20 0 0 chr1 120704997 120705047 -76490385 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1505 960 301 125 7 chr1 120705048 120705480 -76489952 - Lx8 LINE L1 -147 7326 6844 5 1505 1190 236 39 32 chr1 120706403 120706687 -76488745 + B4 SINE B4 4 289 -3 5 1505 200 349 80 36 chr1 120707558 120707695 -76487737 - L2 LINE L2 -843 2576 2434 6 1505 636 50 0 0 chr1 120707742 120707822 -76487610 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1505 379 287 49 10 chr1 120707906 120707985 -76487447 + MTEa LTR MaLR 123 205 -174 6 1505 1315 204 168 12 chr1 120707985 120708149 -76487283 + ORR1D1 LTR MaLR 1 163 -211 6 1505 432 0 0 0 chr1 120708149 120708197 -76487235 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1505 1315 204 168 12 chr1 120708197 120708335 -76487097 + ORR1D1 LTR MaLR 164 354 -20 6 1505 1526 236 41 14 chr1 120708335 120708700 -76486732 + MTE2b LTR MaLR 1 375 -4 6 1505 1315 204 168 12 chr1 120708700 120708718 -76486714 + ORR1D1 LTR MaLR 355 371 -3 6 1505 1009 283 188 7 chr1 120708718 120709136 -76486296 + MER82 DNA MER2_type 114 609 -44 6 1505 498 228 25 34 chr1 120709280 120709398 -76486034 + PB1D10 SINE Alu 1 117 0 6 1505 452 251 87 119 chr1 120709408 120709593 -76485839 - MLT1D LTR MaLR -51 454 276 6 1505 301 352 69 69 chr1 120709653 120709958 -76485474 + ORR1E LTR MaLR 55 359 0 6 1505 355 250 250 0 chr1 120710108 120710208 -76485224 - B4 SINE B4 -83 209 85 6 1505 1038 253 8 30 chr1 120710348 120710580 -76484852 + B4A SINE B4 1 227 -65 6 1505 452 259 111 39 chr1 120710580 120710733 -76484699 + RSINE1 SINE B4 2 165 0 6 1505 723 238 0 33 chr1 120711033 120711185 -76484247 - RSINE1 SINE B4 -17 148 2 6 1505 228 296 60 60 chr1 120711356 120711492 -76483940 - L1MC4 LINE L1 -1033 7009 6869 6 1505 2565 156 39 7 chr1 120711492 120711900 -76483532 + MTC LTR MaLR 1 421 0 6 1505 228 296 60 60 chr1 120711900 120711946 -76483486 - L1MC4 LINE L1 -1174 6868 6827 6 1505 523 242 50 69 chr1 120711976 120711996 -76483436 - B4 SINE B4 -8 284 270 6 1505 351 0 0 0 chr1 120711996 120712035 -76483397 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1505 523 214 188 48 chr1 120712035 120712265 -76483167 - B4 SINE B4 -23 269 2 6 1505 568 309 13 0 chr1 120712739 120712891 -76482541 - RSINE1 SINE B4 -10 155 2 6 1505 367 350 0 0 chr1 120712917 120713020 -76482412 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 1505 394 292 18 36 chr1 120713022 120713132 -76482300 - RSINE1 SINE B4 0 165 58 6 1505 1022 200 93 22 chr1 120713187 120713412 -76482020 - B4 SINE B4 -50 242 2 6 1505 527 254 9 0 chr1 120713416 120713526 -76481906 - ID_B1 SINE B4 0 224 114 6 1505 2001 178 93 5 chr1 120714293 120714678 -76480754 - MTD LTR MaLR 0 419 1 6 1505 300 116 0 0 chr1 120714678 120714721 -76480711 - MTD-int LTR MaLR 0 1258 1216 6 1505 3581 132 144 3 chr1 120714721 120715331 -76480101 - RMER21B LTR ERV1 0 842 147 6 1505 3579 218 110 31 chr1 120715329 120715915 -76479517 - MTD-int LTR MaLR -274 984 334 6 1505 1949 114 97 0 chr1 120715915 120716213 -76479219 + ORR1A2 LTR MaLR 1 327 0 6 1505 3579 218 110 31 chr1 120716213 120716534 -76478898 - MTD-int LTR MaLR -925 333 5 6 1505 1427 167 289 3 chr1 120716547 120716872 -76478560 - MTD LTR MaLR -3 418 1 6 1505 613 287 0 47 chr1 120716872 120717022 -76478410 + RSINE1 SINE B4 22 164 -1 6 1505 496 229 76 0 chr1 120717157 120717288 -76478144 + RMER15 LTR ERVL 422 562 -13 6 1506 342 298 0 175 chr1 120718333 120718433 -76476999 + MER97c DNA MER1_type? 85 177 -913 6 1506 243 0 0 0 chr1 120718433 120718460 -76476972 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1506 342 298 0 175 chr1 120718460 120718530 -76476902 + MER97c DNA MER1_type? 178 225 -865 6 1506 1149 66 0 0 chr1 120718538 120718689 -76476743 + (TCTCC)n Simple_repeat Simple_repeat 5 155 0 6 1506 1158 198 0 28 chr1 120718699 120718912 -76476520 + B3 SINE B2 8 214 -2 6 1506 608 313 12 12 chr1 120718925 120719093 -76476339 + B3A SINE B2 27 194 -4 6 1506 612 259 21 7 chr1 120719105 120719249 -76476183 + B1_Mur1 SINE Alu 3 148 -1 6 1506 1401 276 41 36 chr1 120719317 120719783 -76475649 - RMER5 LTR ERV1 -9 525 58 6 1506 720 181 0 0 chr1 120719860 120720031 -76475401 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1506 210 37 0 0 chr1 120720056 120720083 -76475349 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1506 354 83 0 0 chr1 120720083 120720131 -76475301 + HAL1-3A_ME LINE L1 1971 2018 -840 6 1506 192 298 58 35 chr1 120720978 120721065 -76474367 + MIRb SINE MIR 120 208 -60 6 1506 485 169 12 0 chr1 120721083 120721166 -76474266 + B4 SINE B4 2 85 -207 6 1506 504 277 47 60 chr1 120721166 120721316 -76474116 - ID_B1 SINE B4 -20 204 57 6 1506 348 337 189 0 chr1 120721399 120721568 -76473864 - RMER30 DNA MER1_type -1 201 1 6 1506 577 230 99 90 chr1 120721568 120721769 -76473663 + B4A SINE B4 90 292 0 6 1506 290 296 0 14 chr1 120723071 120723143 -76472289 + BC1_Mm scRNA scRNA 2 72 -80 6 1506 285 342 52 9 chr1 120723143 120723186 -76472246 + B4A SINE B4 2 121 -171 6 1506 240 171 0 0 chr1 120723183 120723224 -76472208 + ID_B1 SINE B4 132 172 -52 6 1506 340 218 51 0 chr1 120723460 120723538 -76471894 - ID4 SINE ID 0 83 2 6 1506 359 326 89 11 chr1 120723573 120723753 -76471679 - L2a LINE L2 -298 3128 2935 6 1506 342 0 0 0 chr1 120724161 120724199 -76471233 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1506 290 75 0 36 chr1 120724204 120724259 -76471173 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 6 1506 506 156 52 0 chr1 120724566 120724662 -76470770 + MTEa LTR MaLR 258 358 -21 6 1506 230 291 169 25 chr1 120725010 120725211 -76470221 + L2b LINE L2 2932 3161 -214 6 1506 315 329 30 0 chr1 120725596 120725760 -76469672 + (TGGA)n Simple_repeat Simple_repeat 3 171 0 6 1506 222 213 0 257 chr1 120725761 120725862 -76469570 - BC1_Mm scRNA scRNA -77 75 1 6 1506 272 279 0 0 chr1 120725861 120725922 -76469510 + RMER30 DNA MER1_type 6 66 -136 6 1506 414 0 0 0 chr1 120725924 120725970 -76469462 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1506 417 189 100 0 chr1 120725971 120726061 -76469371 + RMER30 DNA MER1_type 102 200 -2 6 1506 330 348 12 37 chr1 120726225 120726386 -76469046 - L1MDa LINE L1 -4059 2574 2418 6 1506 343 261 181 9 chr1 120726387 120726503 -76468929 - ID_B1 SINE B4 -2 222 87 6 1506 300 196 0 0 chr1 120726757 120726808 -76468624 - HAL1-3A_ME LINE L1 -833 2025 1975 6 1506 264 148 24 47 chr1 120726808 120726893 -76468539 + (TATG)n Simple_repeat Simple_repeat 4 86 0 6 1506 456 198 44 26 chr1 120726976 120727090 -76468342 - B1F2 SINE Alu -29 120 5 6 1506 846 239 70 28 chr1 120727106 120727393 -76468039 + MTE2b LTR MaLR 1 354 -25 6 1506 809 252 14 65 chr1 120727886 120728102 -76467330 + ID_B1 SINE B4 4 208 -16 6 1506 209 128 26 0 chr1 120728108 120728147 -76467285 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1506 1156 65 0 0 chr1 120728158 120728296 -76467136 - B1_Mus1 SINE Alu -10 138 1 6 1506 241 350 81 76 chr1 120728324 120728534 -76466898 + MLT1H-int LTR MaLR 585 795 -614 6 1506 708 225 67 148 chr1 120728558 120728638 -76466794 + B4 SINE B4 2 67 -225 6 1506 793 135 105 0 chr1 120728638 120728771 -76466661 + B1_Mus2 SINE Alu 1 147 0 6 1506 708 225 67 148 chr1 120728771 120728987 -76466445 + B4 SINE B4 68 274 -18 6 1506 659 304 39 5 chr1 120729017 120729225 -76466207 - B3 SINE B2 0 216 2 6 1506 784 250 30 50 chr1 120729225 120729427 -76466005 - B3A SINE B2 0 198 1 6 1506 468 0 0 0 chr1 120729473 120729525 -76465907 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1506 252 292 197 42 chr1 120729542 120729735 -76465697 - B4 SINE B4 -11 281 59 6 1506 1374 268 24 35 chr1 120730000 120730375 -76465057 + MTE2b LTR MaLR 9 379 0 6 1506 793 110 85 0 chr1 120734996 120735114 -76460318 + B1_Mus2 SINE Alu 1 128 -19 6 1506 255 250 31 156 chr1 120735165 120735293 -76460139 - B1F2 SINE Alu -13 136 25 6 1506 617 263 129 39 chr1 120735202 120735380 -76460052 - ID_B1 SINE B4 -16 208 15 6 1506 212 314 0 28 chr1 120735394 120735466 -76459966 - PB1 SINE Alu 0 127 58 6 1506 233 263 179 26 chr1 120735961 120736078 -76459354 + MIRb SINE MIR 2 136 -132 6 1506 450 273 45 28 chr1 120737392 120737569 -76457863 + MTE2a LTR MaLR 195 374 -5 6 1506 198 0 0 0 chr1 120737587 120737609 -76457823 + (GGCTG)n Simple_repeat Simple_repeat 2 23 0 6 1506 336 318 6 28 chr1 120739260 120739438 -76455994 + (CATA)n Simple_repeat Simple_repeat 4 177 0 6 1506 375 23 0 0 chr1 120739512 120739556 -76455876 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1506 642 257 34 0 chr1 120740092 120740240 -76455192 - B4 SINE B4 -56 236 84 6 1506 1121 273 97 23 chr1 120740455 120740845 -76454587 + MTD LTR MaLR 1 419 0 6 1506 857 210 171 0 chr1 120741491 120741672 -76453760 - B3 SINE B2 -4 212 1 6 1506 962 216 29 5 chr1 120741679 120741884 -76453548 - ID_B1 SINE B4 -1 223 14 6 1506 551 236 138 43 chr1 120741905 120742158 -76453274 + L1M4 LINE L1 5032 5308 -838 6 1506 485 271 33 0 chr1 120742185 120742307 -76453125 + RSINE1 SINE B4 2 127 -38 6 1506 432 143 0 0 chr1 120742903 120742980 -76452452 + RLTR25A LTR ERVK 1 77 -1026 6 1506 218 312 0 0 chr1 120742980 120743028 -76452404 + ID4_ SINE ID 7 54 -29 6 1506 1104 269 20 27 chr1 120743075 120743369 -76452063 - B4A SINE B4 0 292 1 6 1506 411 278 149 67 chr1 120744249 120744457 -76450975 - B4 SINE B4 -60 232 8 6 1506 306 248 48 19 chr1 120745195 120745298 -76450134 + (CATA)n Simple_repeat Simple_repeat 3 108 0 6 1506 488 257 147 7 chr1 120745863 120746140 -76449292 + MTD LTR MaLR 53 403 -16 6 1506 271 217 58 0 chr1 120746410 120746479 -76448953 - B1_Mm SINE Alu 0 147 75 6 1506 261 337 54 0 chr1 120746552 120746644 -76448788 + BC1_Mm scRNA scRNA 2 98 -54 6 1506 428 266 71 15 chr1 120747252 120747419 -76448013 - ID_B1 SINE B4 -50 242 70 6 1506 911 255 63 11 chr1 120747424 120747694 -76447738 - L1_Mur3 LINE L1 -1566 4314 4031 6 1506 182 128 26 0 chr1 120747867 120747906 -76447526 + G-rich Low_complexity Low_complexity 2 41 0 6 1506 360 0 0 0 chr1 120747991 120748031 -76447401 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1506 520 280 82 68 chr1 120748046 120748101 -76447331 - B4 SINE B4 -8 284 215 6 1506 198 0 0 0 chr1 120748107 120748129 -76447303 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1506 907 78 0 0 chr1 120748129 120748250 -76447182 - B1_Mus1 SINE Alu -11 137 17 7 1506 520 280 82 68 chr1 120748250 120748274 -76447158 - B4 SINE B4 -78 214 75 6 1506 899 265 21 0 chr1 120748255 120748444 -76446988 - B4A SINE B4 -99 193 1 7 1506 548 65 13 0 chr1 120748454 120748531 -76446901 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 1506 602 117 9 0 chr1 120749618 120749729 -76445703 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 7 1506 916 255 21 146 chr1 120750122 120750355 -76445077 - B4 SINE B4 0 292 81 7 1506 940 143 0 7 chr1 120750355 120750496 -76444936 - B1_Mus1 SINE Alu -7 141 2 7 1506 916 255 21 146 chr1 120750496 120750592 -76444840 - B4 SINE B4 -212 80 4 7 1506 377 340 18 78 chr1 120751397 120751563 -76443869 - B4A SINE B4 -136 156 1 7 1506 448 276 43 14 chr1 120751690 120751864 -76443568 - ID_B1 SINE B4 0 224 1 7 1506 258 32 0 0 chr1 120752304 120752335 -76443097 + (TGG)n Simple_repeat Simple_repeat 3 33 0 7 1506 1154 93 0 0 chr1 120752524 120752685 -76442747 - MT2B2 LTR ERVL -377 207 47 7 1506 4049 77 14 12 chr1 120752903 120753480 -76441952 + MT2B2 LTR ERVL 1 578 -6 7 1506 459 0 0 0 chr1 120753480 120753531 -76441901 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1506 1075 251 73 4 chr1 120754371 120754643 -76440789 - B4 SINE B4 0 292 2 7 1506 449 48 0 31 chr1 120755034 120755099 -76440333 + (TCCCC)n Simple_repeat Simple_repeat 3 65 0 7 1506 639 230 25 55 chr1 120755111 120755313 -76440119 - B4A SINE B4 -89 203 8 7 1506 409 283 26 9 chr1 120755336 120755450 -76439982 - PB1D10 SINE Alu 0 117 2 7 1506 954 244 43 0 chr1 120756490 120756699 -76438733 + ID_B1 SINE B4 2 219 -5 7 1506 1680 120 51 0 chr1 120756708 120756984 -76438448 + ORR1A2 LTR MaLR 1 290 -37 7 1506 1096 90 0 40 chr1 120756984 120757135 -76438297 + B1_Mus2 SINE Alu 3 147 0 7 1506 207 0 0 0 chr1 120757139 120757162 -76438270 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1506 316 67 0 22 chr1 120757162 120757208 -76438224 + ORR1A2 LTR MaLR 340 384 -10 7 1506 444 19 0 0 chr1 120757622 120757675 -76437757 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1506 1925 187 15 37 chr1 120757675 120758085 -76437347 + MTD LTR MaLR 18 418 -1 7 1506 438 108 0 0 chr1 120758647 120758712 -76436720 + (TGG)n Simple_repeat Simple_repeat 1 65 0 7 1506 365 229 0 0 chr1 120758712 120758782 -76436650 + RSINE1 SINE B4 39 108 -57 7 1506 564 15 0 0 chr1 120759656 120759721 -76435711 + (TAAA)n Simple_repeat Simple_repeat 4 68 0 7 1506 803 252 215 29 chr1 120761920 120762227 -76433205 + MTEa LTR MaLR 1 364 -15 7 1506 286 310 87 66 chr1 120762651 120762834 -76432598 + L2a LINE L2 3035 3221 -205 7 1506 705 295 27 0 chr1 120763380 120763563 -76431869 + B3A SINE B2 9 196 -2 7 1506 664 290 86 9 chr1 120763676 120763931 -76431501 - B4A SINE B4 -19 273 1 7 1506 313 309 27 18 chr1 120764302 120764414 -76431018 + MLT1A1 LTR MaLR 1 113 -295 7 1506 790 261 79 39 chr1 120764978 120765257 -76430175 + B4 SINE B4 1 290 -2 7 1506 690 285 56 53 chr1 120765617 120765912 -76429520 - B4 SINE B4 0 292 14 7 1506 944 276 26 154 chr1 120766207 120766636 -76428796 + MTE2a LTR MaLR 6 379 0 7 1506 472 268 183 132 chr1 120767682 120768026 -76427406 + MTE2b LTR MaLR 9 370 -9 7 1506 532 257 274 46 chr1 120769274 120769511 -76425921 + B4A SINE B4 2 292 0 7 1506 383 88 36 36 chr1 120771112 120771195 -76424237 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 7 1506 217 320 55 39 chr1 120771204 120771331 -76424101 + MIRb SINE MIR 19 147 -121 7 1506 395 353 173 14 chr1 120771414 120771784 -76423648 + MLT1D LTR MaLR 44 472 -33 7 1506 647 191 21 42 chr1 120772614 120772756 -76422676 + B1_Mm SINE Alu 9 147 0 7 1506 348 148 0 0 chr1 120772756 120772817 -76422615 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1506 884 236 133 63 chr1 120772821 120773092 -76422340 - B4 SINE B4 0 292 3 7 1506 1043 234 93 103 chr1 120773974 120774351 -76421081 + MTE2a LTR MaLR 1 373 -6 7 1506 1017 226 47 14 chr1 120775190 120775405 -76420027 + ID_B1 SINE B4 1 222 -2 7 1506 183 129 0 0 chr1 120775719 120775750 -76419682 + (GGA)n Simple_repeat Simple_repeat 2 32 0 7 1506 725 280 133 23 chr1 120776249 120776512 -76418920 + B4 SINE B4 1 292 0 7 1506 339 130 0 0 chr1 120776523 120776577 -76418855 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1506 297 271 35 53 chr1 120776850 120776894 -76418538 - MIR SINE MIR -59 203 165 7 1506 1359 234 95 6 chr1 120776894 120777242 -76418190 - MTEa LTR MaLR 0 379 1 7 1506 297 271 35 53 chr1 120777242 120777310 -76418122 - MIR SINE MIR -98 164 93 7 1506 257 188 0 30 chr1 120778045 120778111 -76417321 + GA-rich Low_complexity Low_complexity 1 64 0 7 1506 581 178 17 33 chr1 120778132 120778312 -76417120 + GA-rich Low_complexity Low_complexity 4 180 0 7 1506 557 241 241 0 chr1 120778336 120778556 -76416876 - B4A SINE B4 -18 274 2 7 1506 387 0 0 0 chr1 120779065 120779108 -76416324 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1506 423 0 0 0 chr1 120779262 120779309 -76416123 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1506 186 352 0 14 chr1 120780259 120780331 -76415101 + MER5B DNA MER1_type 59 129 -49 7 1506 834 265 37 0 chr1 120780353 120780568 -76414864 + ID_B1 SINE B4 1 223 -1 7 1506 2348 144 40 7 chr1 120781390 120781795 -76413637 - MTC LTR MaLR -1 420 3 7 1506 588 227 12 62 chr1 120782123 120782283 -76413149 + B4 SINE B4 1 152 -140 7 1506 478 189 74 0 chr1 120782224 120782319 -76413113 + PB1D9 SINE Alu 9 110 -10 7 1506 763 286 22 45 chr1 120782361 120782557 -76412875 + B4A SINE B4 29 221 -71 7 1506 815 45 27 0 chr1 120782557 120782667 -76412765 + (ATGGTG)n Simple_repeat Simple_repeat 4 116 0 7 1506 763 286 22 45 chr1 120782667 120782693 -76412739 + B4A SINE B4 222 246 -46 7 1506 596 319 20 20 chr1 120782700 120782895 -76412537 + B4 SINE B4 98 292 0 7 1506 542 325 155 20 chr1 120784387 120784735 -76410697 + MLT1D LTR MaLR 111 505 0 7 1506 689 223 126 36 chr1 120784803 120785050 -76410382 + B4A SINE B4 1 269 -23 7 1506 402 57 0 0 chr1 120785050 120785103 -76410329 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1506 309 299 210 11 chr1 120785103 120785289 -76410143 + L1MC4a LINE L1 7646 7868 -14 7 1506 538 325 13 13 chr1 120785339 120785495 -76409937 - RSINE1 SINE B4 -2 163 8 7 1506 1154 232 136 9 chr1 120786072 120786403 -76409029 + MTE2b LTR MaLR 1 373 -6 7 1506 219 69 0 0 chr1 120786983 120787012 -76408420 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1506 283 341 0 0 chr1 120787472 120787554 -76407878 + (CGTG)n Simple_repeat Simple_repeat 1 82 0 7 1506 868 263 62 55 chr1 120787571 120787861 -76407571 - B4A SINE B4 0 292 1 7 1506 723 259 134 12 chr1 120788340 120788586 -76406846 + B4 SINE B4 1 276 -16 7 1506 441 54 0 0 chr1 120788586 120788642 -76406790 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1506 416 285 83 23 chr1 120788785 120788918 -76406514 - B3A SINE B2 -56 142 2 7 1506 219 164 55 0 chr1 120788948 120789003 -76406429 + (CTCA)n Simple_repeat Simple_repeat 1 58 0 7 1506 333 268 241 51 chr1 120789231 120789467 -76405965 + B4A SINE B4 11 291 -1 7 1506 195 42 0 0 chr1 120789480 120789504 -76405928 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1506 297 0 0 0 chr1 120789667 120789700 -76405732 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1506 453 260 60 5 chr1 120790469 120790597 -76404835 + MTEb LTR MaLR 1 129 -250 7 1506 1289 241 48 69 chr1 120790602 120790980 -76404452 - ORR1D2 LTR MaLR 0 370 1 7 1506 579 227 151 69 chr1 120790982 120791200 -76404232 + MTEb LTR MaLR 144 379 0 7 1506 320 0 25 0 chr1 120791375 120791415 -76404017 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 7 1506 258 238 28 0 chr1 120792454 120792532 -76402900 + MIR SINE MIR 107 189 -87 7 1506 1152 270 9 33 chr1 120792930 120793233 -76402199 + B4 SINE B4 15 286 -6 7 1506 251 281 82 126 chr1 120793628 120793704 -76401728 + B4 SINE B4 125 196 -96 7 1506 315 0 0 0 chr1 120793704 120793739 -76401693 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1506 251 281 82 126 chr1 120793739 120793821 -76401611 + B4 SINE B4 197 276 -16 7 1506 476 306 66 0 chr1 120793876 120794059 -76401373 - MER33 DNA MER1_type -125 199 5 7 1506 582 287 14 0 chr1 120794803 120794946 -76400486 + RSINE1 SINE B4 8 152 -13 7 1506 502 228 25 51 chr1 120795067 120795224 -76400208 - MER121 Unknown Unknown -145 267 115 7 1506 363 323 56 20 chr1 120795312 120795508 -76399924 - MIR SINE MIR -38 224 22 7 1506 689 269 164 40 chr1 120795547 120795845 -76399587 + MTE2a LTR MaLR 1 335 -44 7 1506 288 352 35 75 chr1 120797015 120797297 -76398135 + Lx8 LINE L1 7185 7455 -18 7 1506 334 197 65 13 chr1 120799177 120799254 -76396178 - B4A SINE B4 0 292 212 7 1506 212 268 36 0 chr1 120799316 120799372 -76396060 - B4A SINE B4 -198 94 37 7 1506 6645 150 86 23 chr1 120799403 120800820 -76394612 + ORR1B2-int LTR MaLR 4 1509 0 7 1506 419 174 105 0 chr1 120800920 120801006 -76394426 + B1_Mur4 SINE Alu 1 95 -55 7 1506 1490 126 152 0 chr1 120801012 120801275 -76394157 + ORR1B2 LTR MaLR 8 310 -57 7 1506 272 337 99 33 chr1 120801990 120802171 -76393261 - MER63A DNA AcHobo -4 206 14 7 1506 728 246 69 11 chr1 120802383 120802572 -76392860 + B4 SINE B4 37 236 -56 7 1506 270 0 0 0 chr1 120802593 120802623 -76392809 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1506 315 0 0 0 chr1 120802686 120802721 -76392711 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1506 806 161 0 14 chr1 120802721 120802866 -76392566 - B1_Mur3 SINE Alu -6 143 1 7 1506 485 121 12 0 chr1 120803294 120803377 -76392055 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1506 960 260 62 4 chr1 120803379 120803638 -76391794 - B4A SINE B4 -18 274 1 7 1506 236 296 9 0 chr1 120804571 120804679 -76390753 + (TATG)n Simple_repeat Simple_repeat 4 112 0 7 1506 654 296 72 29 chr1 120804690 120804968 -76390464 - B4A SINE B4 0 292 3 8 1506 341 301 88 16 chr1 120805381 120805585 -76389847 + B4A SINE B4 3 233 -59 8 1506 327 198 24 36 chr1 120806097 120806181 -76389251 - MTE2b LTR MaLR -296 83 1 8 1506 842 257 95 47 chr1 120806573 120806821 -76388611 + B4 SINE B4 4 269 -23 8 1506 372 43 0 0 chr1 120806821 120806867 -76388565 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1506 842 257 95 47 chr1 120806867 120806892 -76388540 + B4 SINE B4 270 290 -2 8 1506 779 219 0 32 chr1 120807007 120807163 -76388269 + B3A SINE B2 1 151 -47 8 1506 311 65 0 21 chr1 120807165 120807212 -76388220 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1506 306 0 0 0 chr1 120808127 120808161 -76387271 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1506 468 277 6 96 chr1 120808183 120808339 -76387093 + RSINE1 SINE B4 3 144 -21 8 1506 473 355 41 85 chr1 120810966 120811261 -76384171 + B4A SINE B4 7 288 -4 8 1506 580 259 208 8 chr1 120812028 120812273 -76383159 - MER44B DNA MER2_type -79 471 178 8 1506 797 301 5 0 chr1 120812282 120812485 -76382947 + ID_B1 SINE B4 1 204 -20 8 1506 549 253 73 7 chr1 120812700 120812851 -76382581 - RSINE1 SINE B4 -1 164 4 8 1506 322 215 15 0 chr1 120813605 120813670 -76381762 + B4 SINE B4 14 79 -213 8 1506 432 0 0 0 chr1 120813678 120813726 -76381706 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1506 279 0 0 0 chr1 120813726 120813756 -76381676 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1506 1223 264 104 10 chr1 120814815 120815198 -76380234 + MTD LTR MaLR 1 419 0 8 1506 268 311 39 10 chr1 120815372 120815476 -76379956 + MIR SINE MIR 77 183 -79 8 1506 405 86 0 0 chr1 120815591 120815649 -76379783 + (GGGAGA)n Simple_repeat Simple_repeat 4 61 0 8 1506 388 303 97 0 chr1 120815739 120815924 -76379508 + L1ME1 LINE L1 5902 6104 -75 8 1506 446 238 17 183 chr1 120816050 120816221 -76379211 + B3 SINE B2 43 192 -6 8 1506 1249 82 66 0 chr1 120816221 120816403 -76379029 + B2_Mm2 SINE B2 1 194 -1 8 1506 236 231 0 0 chr1 120816502 120816554 -76378878 + B4 SINE B4 1 52 -240 8 1506 310 378 68 68 chr1 120816597 120816878 -76378554 + B4 SINE B4 2 282 -10 8 1506 252 360 17 35 chr1 120816932 120817047 -76378385 + B4A SINE B4 39 151 -141 8 1506 1025 245 113 49 chr1 120817051 120817340 -76378092 + MTEa LTR MaLR 20 342 -37 8 1506 579 254 119 5 chr1 120817340 120817534 -76377898 - B3 SINE B2 0 216 1 8 1506 975 245 113 49 chr1 120817534 120817570 -76377862 + MTEa LTR MaLR 343 366 -13 8 1506 404 300 114 29 chr1 120817795 120817970 -76377462 + ORR1E LTR MaLR 3 192 -167 8 1506 424 261 56 35 chr1 120818003 120818146 -76377286 + RSINE1 SINE B4 3 148 -17 8 1506 225 167 0 23 chr1 120818464 120818507 -76376925 - L1MD2 LINE L1 -5748 799 758 8 1506 217 239 88 15 chr1 120819095 120819163 -76376269 + B4 SINE B4 17 89 -203 8 1506 457 296 15 7 chr1 120819167 120819303 -76376129 + RSINE1 SINE B4 9 145 -20 8 1506 261 119 0 0 chr1 120819306 120819348 -76376084 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1506 892 246 39 5 chr1 120819367 120819575 -76375857 - B3 SINE B2 -1 215 1 8 1506 325 354 49 0 chr1 120819575 120819719 -76375713 + B4 SINE B4 134 284 -8 8 1506 246 153 16 48 chr1 120819730 120819759 -76375673 + (CCCA)n Simple_repeat Simple_repeat 3 30 0 8 1506 323 44 22 0 chr1 120819759 120819804 -76375628 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1506 246 153 16 48 chr1 120819804 120819836 -76375596 + (CCCA)n Simple_repeat Simple_repeat 3 34 0 8 1506 253 222 0 0 chr1 120820937 120820991 -76374441 + MLT1A1 LTR MaLR 342 395 -13 8 1506 820 228 32 5 chr1 120821018 120821208 -76374224 + B3A SINE B2 1 195 -3 8 1506 491 257 30 5 chr1 120821236 120821401 -76374031 + ID_B1 SINE B4 1 171 -121 8 1506 241 241 11 103 chr1 120821319 120821432 -76374000 + B1F1 SINE Alu 6 105 -15 8 1506 1157 257 58 23 chr1 120821609 120821956 -76373476 + ORR1E LTR MaLR 1 359 0 8 1506 494 279 69 73 chr1 120822112 120822386 -76373046 - B4 SINE B4 -19 273 1 8 1506 432 280 184 5 chr1 120822779 120822969 -76372463 + ID_B1 SINE B4 1 224 0 8 1506 806 276 42 28 chr1 120823789 120824072 -76371360 + B4A SINE B4 2 288 -4 8 1506 408 40 0 0 chr1 120824120 120824170 -76371262 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1506 561 64 0 0 chr1 120824882 120824960 -76370472 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1506 609 298 75 0 chr1 120824970 120825225 -76370207 - B4 SINE B4 -16 276 3 8 1506 429 278 118 0 chr1 120825321 120825465 -76369967 + RSINE1 SINE B4 5 165 0 8 1506 288 0 0 0 chr1 120825473 120825505 -76369927 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1506 322 268 168 30 chr1 120825658 120825672 -76369760 + B1F SINE Alu 1 149 0 8 1506 448 188 137 0 chr1 120825672 120825789 -76369643 + ID_B1 SINE B4 92 224 0 8 1506 1955 143 78 27 chr1 120826416 120826789 -76368643 + MTC LTR MaLR 28 419 -2 8 1506 22 0 0 0 chr1 120827512 120827534 -76367898 + AT_rich Low_complexity Low_complexity 1 22 0 8 1506 861 252 8 112 chr1 120828020 120828095 -76367337 - B4A SINE B4 -18 274 218 8 1506 733 179 109 11 chr1 120828095 120828270 -76367162 - B3A SINE B2 -6 192 1 8 1506 243 0 0 0 chr1 120828272 120828299 -76367133 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 8 1506 861 252 8 112 chr1 120828299 120828486 -76366946 - B4A SINE B4 -75 217 37 8 1506 994 253 80 22 chr1 120828486 120828852 -76366580 + MTD LTR MaLR 1 379 0 8 1506 183 233 32 48 chr1 120829303 120829366 -76366066 + L3 LINE CR1 890 951 -3538 8 1506 191 261 28 28 chr1 120829712 120829783 -76365649 + MIR3 SINE MIR 91 161 -47 8 1506 21 0 0 0 chr1 120829935 120829956 -76365476 + AT_rich Low_complexity Low_complexity 1 21 0 8 1506 185 139 23 0 chr1 120830014 120830057 -76365375 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1506 574 258 106 11 chr1 120830117 120830305 -76365127 - B4A SINE B4 -60 232 27 8 1506 463 250 94 14 chr1 120830378 120830516 -76364916 + B1_Mur1 SINE Alu 1 149 0 8 1506 534 249 141 27 chr1 120830593 120830781 -76364651 - B3A SINE B2 -3 213 6 8 1506 450 0 0 0 chr1 120833213 120833263 -76362169 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1506 410 85 0 0 chr1 120833504 120833563 -76361869 + PB1D9 SINE Alu 1 59 -61 8 1506 319 237 0 38 chr1 120833563 120833583 -76361849 + ID_B1 SINE B4 82 157 -67 8 1506 380 326 104 27 chr1 120833598 120833781 -76361651 - B3A SINE B2 0 198 2 8 1506 342 336 88 0 chr1 120833781 120833894 -76361538 - B4A SINE B4 -62 230 107 8 1506 821 257 73 77 chr1 120834092 120834379 -76361053 + B4A SINE B4 5 290 -2 8 1506 386 268 0 7 chr1 120834390 120834667 -76360765 + (CA)n Simple_repeat Simple_repeat 1 274 0 8 1506 641 239 42 0 chr1 120835485 120835627 -76359805 + RSINE1 SINE B4 2 149 -16 8 1506 363 194 15 0 chr1 120837196 120837263 -76358169 + RSINE1 SINE B4 31 98 -67 8 1506 303 127 0 0 chr1 120837300 120837363 -76358069 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 8 1506 237 33 0 0 chr1 120837458 120837488 -76357944 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 8 1506 898 245 58 47 chr1 120837490 120837764 -76357668 - B4A SINE B4 -14 278 2 8 1506 355 231 0 13 chr1 120837768 120837847 -76357585 - RMER30 DNA MER1_type -112 90 13 8 1506 386 265 59 111 chr1 120838487 120838640 -76356792 + B4A SINE B4 3 147 -145 8 1506 1140 119 124 5 chr1 120839435 120839637 -76355795 - URR1A DNA MER1_type 0 226 1 8 1506 214 320 58 0 chr1 120839955 120840058 -76355374 - RSINE1 SINE B4 -37 128 20 8 1506 342 228 133 50 chr1 120840106 120840226 -76355206 - B1F1 SINE Alu -5 144 15 8 1506 255 341 57 36 chr1 120840226 120840246 -76355186 - ID_B1 SINE B4 -4 220 78 8 1506 486 248 64 0 chr1 120840275 120840400 -76355032 - RSINE1 SINE B4 -22 143 11 8 1506 471 233 68 17 chr1 120840768 120840886 -76354546 + ID_B1 SINE B4 81 204 -20 8 1506 422 234 64 0 chr1 120840904 120840998 -76354434 + ID_B1 SINE B4 105 204 -20 8 1506 243 173 40 13 chr1 120841005 120841081 -76354351 + GA-rich Low_complexity Low_complexity 1 78 0 8 1506 228 135 0 0 chr1 120842222 120842259 -76353173 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1506 257 272 0 22 chr1 120842484 120842623 -76352809 + (TGGG)n Simple_repeat Simple_repeat 2 137 0 8 1506 253 330 31 0 chr1 120842640 120842737 -76352695 + (TGGG)n Simple_repeat Simple_repeat 3 102 0 8 1506 324 70 0 0 chr1 120842738 120842781 -76352651 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 8 1506 192 77 0 0 chr1 120842816 120842842 -76352590 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 8 1506 582 235 66 52 chr1 120843858 120844069 -76351363 - ID_B1 SINE B4 -10 214 1 8 1506 195 355 32 24 chr1 120844261 120844385 -76351047 + MIRb SINE MIR 28 152 -116 8 1506 827 223 57 19 chr1 120844448 120844658 -76350774 - ID_B1 SINE B4 0 224 7 8 1506 881 249 130 59 chr1 120845422 120845776 -76349656 - MTE2a LTR MaLR 0 379 1 8 1506 727 280 102 5 chr1 120845781 120845996 -76349436 + B4A SINE B4 43 278 -14 8 1506 414 209 171 0 chr1 120846000 120846105 -76349327 - MTE2a LTR MaLR -63 316 194 8 1506 863 261 63 96 chr1 120847471 120847836 -76347596 - MTE2a LTR MaLR -14 365 13 8 1507 700 289 52 22 chr1 120848507 120848779 -76346653 - B4A SINE B4 -12 280 1 8 1507 306 0 0 0 chr1 120849247 120849281 -76346151 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1507 905 291 9 0 chr1 120849281 120849501 -76345931 - B4A SINE B4 -23 269 48 8 1507 343 316 63 47 chr1 120849578 120850066 -76345366 - HAL1 LINE L1 -1042 1465 970 9 1507 269 345 75 8 chr1 120850807 120850927 -76344505 + B4A SINE B4 49 176 -116 9 1507 396 0 0 0 chr1 120850996 120851040 -76344392 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1507 201 138 0 0 chr1 120851247 120851276 -76344156 + (CATCC)n Simple_repeat Simple_repeat 4 32 0 9 1507 711 277 70 11 chr1 120852096 120852366 -76343066 + B4 SINE B4 3 288 -4 9 1507 186 43 0 0 chr1 120852384 120852407 -76343025 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1507 405 0 0 0 chr1 120852743 120852788 -76342644 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1507 219 36 0 0 chr1 120853446 120853474 -76341958 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1507 686 268 97 27 chr1 120853478 120853735 -76341697 - B4 SINE B4 -17 275 1 9 1507 490 327 63 67 chr1 120854063 120854332 -76341100 + B4A SINE B4 7 274 -18 9 1507 841 116 98 60 chr1 120854583 120854767 -76340665 + B2_Mm2 SINE B2 1 191 -4 9 1507 914 254 68 0 chr1 120854970 120855190 -76340242 + B4 SINE B4 1 235 -57 9 1507 809 242 56 14 chr1 120855596 120855810 -76339622 - ID_B1 SINE B4 0 224 2 9 1507 545 310 81 2 chr1 120855939 120856234 -76339198 - L1MA4A LINE L1 -290 5899 5583 9 1507 396 0 0 0 chr1 120856276 120856320 -76339112 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1507 1975 196 38 10 chr1 120856324 120856722 -76338710 - MTD LTR MaLR -6 413 5 9 1507 890 243 158 34 chr1 120856816 120857144 -76338288 + MTE2b LTR MaLR 1 369 -10 9 1507 421 298 124 28 chr1 120857207 120857352 -76338080 + RSINE1 SINE B4 3 161 -4 9 1507 237 33 0 0 chr1 120857393 120857423 -76338009 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1507 589 204 6 83 chr1 120857556 120857710 -76337722 + B1_Mur1 SINE Alu 2 149 0 9 1507 867 20 0 0 chr1 120857732 120857833 -76337599 + (GAGAA)n Simple_repeat Simple_repeat 3 103 0 9 1507 341 343 42 19 chr1 120858055 120858269 -76337163 + L1MC4a LINE L1 5685 5903 -1979 9 1507 224 270 16 0 chr1 120858275 120858338 -76337094 + (TA)n Simple_repeat Simple_repeat 2 65 0 9 1507 987 296 43 7 chr1 120858577 120858853 -76336579 - B4A SINE B4 -6 286 1 9 1507 816 290 153 0 chr1 120859196 120859444 -76335988 + B4 SINE B4 6 291 -1 9 1507 411 132 0 0 chr1 120859449 120859517 -76335915 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 1507 274 56 0 0 chr1 120859894 120859930 -76335502 + U2 snRNA snRNA 1 36 -152 9 1507 721 246 120 0 chr1 120860073 120860240 -76335192 + ID_B1 SINE B4 19 205 -19 9 1507 333 0 0 0 chr1 120860244 120860281 -76335151 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1507 446 0 19 0 chr1 120860281 120860334 -76335098 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1507 308 188 14 0 chr1 120860341 120860410 -76335022 + (TA)n Simple_repeat Simple_repeat 1 70 0 9 1507 261 225 99 0 chr1 120861027 120861098 -76334334 - B4A SINE B4 -18 274 197 9 1507 1672 222 41 10 chr1 120861107 120861498 -76333934 + MTD LTR MaLR 15 417 -2 9 1507 481 230 145 41 chr1 120861750 120861877 -76333555 + RSINE1 SINE B4 3 149 -16 9 1507 408 40 0 0 chr1 120861877 120861927 -76333505 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1507 481 230 145 41 chr1 120861927 120861944 -76333488 + RSINE1 SINE B4 150 162 -3 9 1507 21 0 0 0 chr1 120861994 120862015 -76333417 + AT_rich Low_complexity Low_complexity 1 21 0 9 1507 264 307 163 0 chr1 120862015 120862168 -76333264 + L1MEd LINE L1 587 764 -5355 9 1507 414 326 17 23 chr1 120862649 120862825 -76332607 + GA-rich Low_complexity Low_complexity 3 177 0 9 1507 327 285 61 27 chr1 120863002 120863051 -76332381 + MER33 DNA MER1_type 167 214 -110 9 1507 457 264 55 55 chr1 120863051 120863215 -76332217 - RSINE1 SINE B4 0 165 2 9 1507 327 285 61 27 chr1 120863215 120863313 -76332119 + MER33 DNA MER1_type 215 319 -5 9 1507 763 231 92 52 chr1 120863654 120863905 -76331527 + B4A SINE B4 1 274 -18 9 1507 315 0 0 0 chr1 120863905 120863940 -76331492 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1507 468 0 0 0 chr1 120863940 120863991 -76331441 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1507 345 140 0 0 chr1 120864530 120864587 -76330845 + (ATGGTG)n Simple_repeat Simple_repeat 4 60 0 9 1507 222 205 45 17 chr1 120865007 120865079 -76330353 - MIRc SINE MIR -130 138 60 9 1507 562 238 12 0 chr1 120865196 120865356 -76330076 + GA-rich Low_complexity Low_complexity 2 163 0 9 1507 730 269 32 23 chr1 120866415 120866632 -76328800 + B4 SINE B4 5 223 -69 9 1507 228 162 0 93 chr1 120866632 120866707 -76328725 + A-rich Low_complexity Low_complexity 4 71 0 9 1507 676 261 53 0 chr1 120866711 120866899 -76328533 + B3A SINE B2 1 198 0 9 1507 450 0 0 0 chr1 120866974 120867024 -76328408 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1507 192 125 0 0 chr1 120867107 120867139 -76328293 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1507 260 272 74 0 chr1 120867139 120867220 -76328212 - MER2 DNA MER2_type -97 248 162 9 1507 282 335 9 13 chr1 120867665 120867813 -76327619 + GA-rich Low_complexity Low_complexity 1 147 0 9 1507 351 105 0 0 chr1 120867839 120867896 -76327536 + (CAGA)n Simple_repeat Simple_repeat 3 59 0 9 1507 655 232 130 0 chr1 120868042 120868227 -76327205 - B3 SINE B2 -7 209 1 9 1507 1140 273 54 27 chr1 120869279 120869648 -76325784 + MTEa LTR MaLR 1 379 0 9 1507 309 240 29 39 chr1 120870281 120870385 -76325047 + RSINE1 SINE B4 2 104 -61 9 1507 906 263 5 5 chr1 120871156 120871374 -76324058 + ID_B1 SINE B4 2 219 -5 9 1507 363 299 37 0 chr1 120871464 120871571 -76323861 - RSINE1 SINE B4 -15 150 40 9 1507 871 252 5 5 chr1 120871847 120872062 -76323370 + B3 SINE B2 2 216 0 9 1507 532 304 21 32 chr1 120872064 120872214 -76323218 - L1MB2 LINE L1 -255 5916 5768 9 1507 2046 100 51 0 chr1 120872214 120872525 -76322907 + ORR1A2 LTR MaLR 1 327 0 9 1507 532 304 21 32 chr1 120872525 120872561 -76322871 - L1MB2 LINE L1 -404 5767 5732 9 1507 817 73 194 0 chr1 120872655 120872779 -76322653 + B1_Mus1 SINE Alu 1 148 0 9 1507 386 279 61 16 chr1 120873646 120873785 -76321647 + ID_B1 SINE B4 9 150 -74 9 1507 411 247 10 10 chr1 120873929 120874027 -76321405 - ID_B1 SINE B4 -109 115 18 9 1507 240 250 36 21 chr1 120874129 120874221 -76321211 + MIRc SINE MIR 48 133 -135 9 1507 460 324 144 16 chr1 120874256 120874513 -76320919 + B4 SINE B4 3 292 0 9 1507 425 293 126 0 chr1 120874686 120874884 -76320548 - ID_B1 SINE B4 0 224 2 9 1507 1146 36 0 0 chr1 120875169 120875308 -76320124 + B1_Mus1 SINE Alu 1 139 -9 9 1507 423 0 0 0 chr1 120876038 120876085 -76319347 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1507 284 200 28 28 chr1 120876143 120876215 -76319217 + ID_B1 SINE B4 124 195 -29 9 1507 186 240 19 29 chr1 120876225 120876328 -76319104 + GA-rich Low_complexity Low_complexity 3 104 0 9 1507 693 304 34 10 chr1 120876433 120876446 -76318986 - ID_B1 SINE B4 -1 223 211 9 1507 360 0 0 0 chr1 120876446 120876486 -76318946 + (TGG)n Simple_repeat Simple_repeat 1 40 0 9 1507 693 304 34 10 chr1 120876486 120876681 -76318751 - ID_B1 SINE B4 -14 210 11 9 1507 1338 237 28 16 chr1 120876949 120877270 -76318162 - MTE2b LTR MaLR -53 326 2 9 1507 354 276 138 0 chr1 120877899 120878022 -76317410 + ID_B1 SINE B4 56 195 -29 9 1507 360 0 0 0 chr1 120878955 120878995 -76316437 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1507 1164 256 44 15 chr1 120879575 120879943 -76315489 + MTD LTR MaLR 2 392 -8 9 1507 331 263 78 17 chr1 120880424 120880540 -76314892 + B1F2 SINE Alu 26 148 -1 9 1507 276 253 24 24 chr1 120880568 120880653 -76314779 + B4A SINE B4 42 126 -166 9 1507 254 231 11 0 chr1 120880678 120880769 -76314663 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 1507 204 305 12 47 chr1 120881033 120881136 -76314296 + MIRb SINE MIR 4 105 -163 9 1507 1743 176 95 83 chr1 120881981 120882402 -76313030 + MT2A LTR ERVL 1 426 -107 9 1507 504 267 73 89 chr1 120883230 120883242 -76312190 + CYRA11_Mm Unknown Y-chromosome 160 226 -391 9 1507 1181 144 53 0 chr1 120883242 120883450 -76311982 - URR1B DNA MER1_type 0 225 7 9 1507 504 267 73 89 chr1 120883450 120883477 -76311955 + CYRA11_Mm Unknown Y-chromosome 227 402 -215 9 1507 713 302 106 0 chr1 120883792 120884037 -76311395 + B4A SINE B4 1 271 -21 9 1507 390 91 0 0 chr1 120884076 120884131 -76311301 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1507 364 189 26 39 chr1 120884684 120884761 -76310671 + B4A SINE B4 4 79 -213 9 1507 363 311 100 56 chr1 120884763 120884923 -76310509 + RMER30 DNA MER1_type 36 202 0 9 1507 1130 279 73 31 chr1 120885719 120886074 -76309358 - MTEa LTR MaLR -9 370 1 9 1507 884 282 20 4 chr1 120886379 120886632 -76308800 + B4A SINE B4 1 257 -35 9 1507 204 276 17 8 chr1 120886762 120886879 -76308553 + (CATA)n Simple_repeat Simple_repeat 1 118 0 9 1507 217 282 14 14 chr1 120886890 120886962 -76308470 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 9 1507 229 100 0 39 chr1 120886966 120887018 -76308414 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 9 1507 211 254 0 0 chr1 120887991 120888046 -76307386 + MIR3 SINE MIR 111 165 -43 9 1507 438 179 115 10 chr1 120888493 120888589 -76306843 - B1_Mur2 SINE Alu -2 147 42 9 1507 720 219 25 0 chr1 120888592 120888837 -76306595 + (TCTCTG)n Simple_repeat Simple_repeat 1 251 0 9 1507 250 250 0 0 chr1 120888843 120888899 -76306533 + MTD LTR MaLR 356 411 -8 9 1507 2863 218 214 35 chr1 120888903 120889969 -76305463 + MTD-int LTR MaLR 2 1258 0 9 1507 1335 235 64 10 chr1 120889969 120890051 -76305381 + MTD LTR MaLR 1 87 -332 9 1507 1167 186 4 22 chr1 120890051 120890277 -76305155 + URR1B DNA MER1_type 1 222 -3 9 1507 1335 235 64 10 chr1 120890277 120890508 -76304924 + MTD LTR MaLR 88 331 -88 9 1507 252 149 0 0 chr1 120890683 120890730 -76304702 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 9 1507 293 235 123 0 chr1 120890789 120890870 -76304562 + MTD LTR MaLR 288 378 -1 9 1507 736 208 40 45 chr1 120891800 120891976 -76303456 + ID_B1 SINE B4 24 198 -26 9 1507 303 150 0 0 chr1 120891984 120892044 -76303388 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 1 1507 344 250 0 152 chr1 120892216 120892348 -76303084 - B1F SINE Alu -37 112 1 1 1507 746 223 82 0 chr1 120892348 120892423 -76303009 - ID_B1 SINE B4 -131 93 4 1 1507 337 277 53 9 chr1 120892831 120892944 -76302488 - MIR SINE MIR -32 230 113 1 1507 282 307 0 13 chr1 120893221 120893297 -76302135 + GA-rich Low_complexity Low_complexity 5 79 0 1 1507 723 108 0 0 chr1 120893303 120893423 -76302009 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 1507 297 322 8 33 chr1 120893876 120893998 -76301434 - MER121 Unknown Unknown -200 212 94 1 1507 257 128 21 0 chr1 120894208 120894255 -76301177 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1507 501 17 0 0 chr1 120894263 120894321 -76301111 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1507 742 255 109 20 chr1 120894335 120894583 -76300849 - B4 SINE B4 -22 270 1 1 1507 240 35 0 0 chr1 120895510 120895539 -76299893 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1507 1033 132 137 66 chr1 120896080 120896291 -76299141 - URR1A DNA MER1_type 0 226 1 1 1507 225 83 0 0 chr1 120899226 120899262 -76296170 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1 1507 892 113 42 0 chr1 120899294 120899436 -76295996 + URR1B DNA MER1_type 26 173 -52 1 1507 340 283 59 118 chr1 120899449 120899585 -76295847 - ID_B1 SINE B4 -16 208 81 1 1507 338 264 0 54 chr1 120899615 120899727 -76295705 + RSINE1 SINE B4 6 111 -54 1 1507 390 42 0 0 chr1 120899768 120899816 -76295616 + (TAA)n Simple_repeat Simple_repeat 3 50 0 1 1507 288 274 68 0 chr1 120900124 120900197 -76295235 - MTEa LTR MaLR -296 83 6 1 1507 294 317 60 40 chr1 120900197 120900213 -76295219 + B4 SINE B4 79 151 -141 1 1507 546 193 75 8 chr1 120900213 120900333 -76295099 + B1_Mur4 SINE Alu 11 138 -12 1 1507 294 317 60 40 chr1 120900333 120900348 -76295084 + B4 SINE B4 152 232 -60 1 1507 413 81 16 0 chr1 120900350 120900412 -76295020 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 1507 475 211 87 123 chr1 120900530 120900725 -76294707 - B3A SINE B2 0 198 11 1 1507 355 302 33 92 chr1 120901882 120902035 -76293397 - B4A SINE B4 -15 277 134 1 1507 339 231 0 0 chr1 120902052 120902117 -76293315 - B4A SINE B4 -226 66 2 1 1507 247 244 26 0 chr1 120902418 120902496 -76292936 + RSINE1 SINE B4 2 81 -84 1 1507 601 260 48 0 chr1 120903314 120903460 -76291972 - RSINE1 SINE B4 -8 157 5 1 1507 434 209 56 28 chr1 120903460 120903558 -76291874 - B1F SINE Alu -14 135 34 1 1507 668 175 118 7 chr1 120903472 120903616 -76291816 - ID_B1 SINE B4 -24 200 41 1 1507 200 188 0 0 chr1 120904440 120904472 -76290960 + MIR SINE MIR 118 149 -59 1 1507 328 105 111 28 chr1 120905158 120905379 -76290053 + (CTAGG)n Simple_repeat Simple_repeat 1 239 0 1 1507 1513 118 14 78 chr1 120905807 120906100 -76289332 + Lx4A LINE L1 6784 7057 -1 1 1507 26 0 0 0 chr1 120906101 120906127 -76289305 + AT_rich Low_complexity Low_complexity 1 26 0 1 1507 716 190 73 0 chr1 120906301 120906438 -76288994 + B1_Mur2 SINE Alu 2 148 -1 1 1507 469 275 55 55 chr1 120906663 120906809 -76288623 - Lx8 LINE L1 -760 6713 6568 1 1507 425 249 152 62 chr1 120908171 120908345 -76287087 + B4 SINE B4 5 213 -79 1 1507 207 0 0 0 chr1 120908345 120908368 -76287064 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1507 425 249 152 62 chr1 120908368 120908450 -76286982 + B4 SINE B4 214 284 -8 1 1507 424 86 14 14 chr1 120908457 120908528 -76286904 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1 1507 669 244 59 12 chr1 120908972 120909142 -76286290 + B3A SINE B2 2 179 -19 1 1507 237 286 0 14 chr1 120909615 120909686 -76285746 + CT-rich Low_complexity Low_complexity 1 70 0 1 1507 357 230 0 0 chr1 120909844 120909944 -76285488 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 1507 408 179 0 0 chr1 120910171 120910249 -76285183 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1507 367 296 0 53 chr1 120910455 120910569 -76284863 - PB1D10 SINE Alu -9 108 1 1 1507 868 196 17 11 chr1 120910569 120910649 -76284783 - ID SINE ID -142 82 2 1 1507 886 260 10 0 chr1 120911039 120911243 -76284189 + ID_B1 SINE B4 1 206 -18 1 1507 565 260 0 16 chr1 120911411 120911536 -76283896 + RSINE1 SINE B4 43 165 0 1 1507 555 369 44 7 chr1 120912693 120912963 -76282469 + B4A SINE B4 7 286 -6 1 1507 1051 259 112 21 chr1 120913305 120913487 -76281945 + MTEa LTR MaLR 1 195 -184 1 1507 585 0 0 0 chr1 120913487 120913552 -76281880 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1507 1051 259 112 21 chr1 120913552 120913708 -76281724 + MTEa LTR MaLR 196 370 -9 1 1507 493 248 166 24 chr1 120914557 120914768 -76280664 + B4A SINE B4 30 270 -22 1 1507 458 282 16 33 chr1 120914825 120915008 -76280424 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1507 432 0 0 0 chr1 120915615 120915663 -76279769 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1507 439 258 217 13 chr1 120916157 120916314 -76279118 + B4A SINE B4 102 290 -2 1 1507 246 242 0 0 chr1 120916320 120916386 -76279046 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1507 231 207 22 33 chr1 120916409 120916499 -76278933 + (CATG)n Simple_repeat Simple_repeat 3 91 0 1 1507 3071 144 24 59 chr1 120917175 120917771 -76277661 + RMER15 LTR ERVL 1 575 0 1 1507 380 266 55 14 chr1 120917927 120918072 -76277360 + B4A SINE B4 1 151 -141 1 1507 404 336 0 8 chr1 120918152 120918278 -76277154 + RSINE1 SINE B4 24 148 -17 1 1507 396 0 0 0 chr1 120918280 120918324 -76277108 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1507 457 204 71 0 chr1 120918390 120918488 -76276944 + B1_Mur1 SINE Alu 6 110 -39 1 1507 822 199 16 27 chr1 120918675 120918861 -76276571 + B3 SINE B2 33 216 0 1 1507 701 231 101 43 chr1 120920757 120921015 -76274417 + B4 SINE B4 2 274 -18 1 1507 576 29 0 0 chr1 120921054 120921124 -76274308 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 1 1507 186 215 25 12 chr1 120921138 120921218 -76274214 + GA-rich Low_complexity Low_complexity 5 85 0 1 1507 219 281 78 0 chr1 120921791 120921855 -76273577 + BC1_Mm scRNA scRNA 2 70 -82 1 1507 429 288 189 31 chr1 120921798 120922002 -76273430 + B4 SINE B4 15 291 -1 1 1507 725 238 144 35 chr1 120922988 120923245 -76272187 - B4A SINE B4 -7 285 1 1 1507 526 218 33 66 chr1 120923609 120923761 -76271671 - B1_Mur1 SINE Alu -1 148 2 1 1507 1318 191 92 51 chr1 120924140 120924454 -76270978 + ORR1D2 LTR MaLR 42 368 -2 1 1507 733 169 0 0 chr1 120924606 120924730 -76270702 - B1_Mur3 SINE Alu -24 125 2 1 1507 943 225 28 9 chr1 120924762 120924977 -76270455 + ID_B1 SINE B4 3 221 -3 1 1507 540 259 12 37 chr1 120924984 120925148 -76270284 + RSINE1 SINE B4 5 164 -1 1 1507 603 261 133 22 chr1 120925211 120925391 -76270041 + B3 SINE B2 9 208 -8 1 1507 227 309 146 57 chr1 120926014 120926172 -76269260 + B4A SINE B4 1 172 -120 1 1507 229 196 0 21 chr1 120926163 120926210 -76269222 + RSINE1 SINE B4 95 140 -25 1 1507 306 0 0 0 chr1 120926224 120926258 -76269174 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1507 477 34 0 0 chr1 120926361 120926420 -76269012 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1507 234 91 0 0 chr1 120926866 120926899 -76268533 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1 1507 390 318 17 17 chr1 120927509 120927685 -76267747 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 1 1507 254 333 18 0 chr1 120927628 120927739 -76267693 + (TGAA)n Simple_repeat Simple_repeat 2 114 0 1 1507 721 264 49 10 chr1 120928334 120928537 -76266895 - ID_B1 SINE B4 -10 214 4 1 1507 267 240 252 16 chr1 120929197 120929289 -76266143 + B4A SINE B4 2 118 -174 1 1507 351 0 0 0 chr1 120929289 120929328 -76266104 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1507 267 249 356 5 chr1 120929328 120929431 -76266001 + B4A SINE B4 119 255 -37 1 1507 428 91 15 0 chr1 120929453 120929519 -76265913 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1507 289 203 0 80 chr1 120929792 120929867 -76265565 + RSINE1 SINE B4 95 163 -2 1 1507 245 303 14 90 chr1 120929960 120930105 -76265327 - RMER12 LTR ERVK -471 851 718 1 1507 662 210 227 58 chr1 120931003 120931316 -76264116 + L1MEc LINE L1 39 404 -5996 1 1507 438 362 101 80 chr1 120931378 120931543 -76263889 + L1MEc LINE L1 507 697 -5703 1 1507 576 238 88 54 chr1 120931543 120931747 -76263685 + ID_B1 SINE B4 2 212 -12 1 1507 438 362 101 80 chr1 120931747 120932106 -76263326 + L1MEc LINE L1 698 1042 -5358 1 1507 603 237 77 19 chr1 120932331 120932486 -76262946 + RSINE1 SINE B4 2 165 0 1 1507 624 298 19 10 chr1 120932542 120932748 -76262684 + ID_B1 SINE B4 1 208 -16 1 1507 1769 179 92 13 chr1 120932748 120933127 -76262305 + MTD LTR MaLR 1 409 -10 1 1507 188 203 214 14 chr1 120933462 120933532 -76261900 - MIR SINE MIR 0 262 179 1 1507 306 224 15 15 chr1 120933584 120933652 -76261780 - ID_B1 SINE B4 -11 213 146 1 1507 767 170 7 7 chr1 120933694 120933830 -76261602 + B1_Mur2 SINE Alu 3 138 -11 1 1507 523 246 119 23 chr1 120933884 120934111 -76261321 - ID_B1 SINE B4 -6 218 2 1 1507 318 235 25 0 chr1 120934870 120934951 -76260481 + RSINE1 SINE B4 3 85 -80 1 1507 465 19 0 0 chr1 120935011 120935065 -76260367 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1507 333 0 0 0 chr1 120935415 120935452 -76259980 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1507 1004 183 30 6 chr1 120935728 120936578 -76258854 + (TGGA)n Simple_repeat Simple_repeat 1 870 0 1 1507 662 220 146 5 chr1 120936939 120937131 -76258301 + ID_B1 SINE B4 1 219 -5 1 1507 867 170 0 20 chr1 120937232 120937382 -76258050 + B1_Mur3 SINE Alu 1 147 -2 1 1507 231 36 0 0 chr1 120937513 120937541 -76257891 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1507 441 274 96 0 chr1 120937700 120937835 -76257597 + B1F2 SINE Alu 1 148 -1 1 1507 577 274 6 6 chr1 120937860 120938018 -76257414 + RSINE1 SINE B4 5 162 -3 1 1507 312 120 0 0 chr1 120938019 120938069 -76257363 + (CATG)n Simple_repeat Simple_repeat 2 51 0 1 1507 278 284 68 0 chr1 120938803 120938891 -76256541 + MER54B LTR ERVL 172 265 -528 1 1507 429 217 11 0 chr1 120938976 120939068 -76256364 - ID_B1 SINE B4 -2 222 130 1 1507 335 252 38 28 chr1 120939068 120939082 -76256350 - B1F2 SINE Alu -2 147 41 1 1507 438 263 11 0 chr1 120939254 120939349 -76256083 + B4 SINE B4 2 97 -195 1 1507 564 203 14 76 chr1 120939354 120939498 -76255934 + RSINE1 SINE B4 9 143 -22 1 1507 970 276 34 108 chr1 120939830 120940237 -76255195 + MTE2a LTR MaLR 1 377 -2 1 1507 701 279 38 19 chr1 120940557 120940769 -76254663 + ID_B1 SINE B4 5 220 -4 1 1507 354 45 0 0 chr1 120940974 120941018 -76254414 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1507 252 120 0 0 chr1 120941129 120941179 -76254253 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1507 684 212 36 0 chr1 120941196 120941333 -76254099 - RSINE1 SINE B4 -11 154 13 1 1507 680 243 172 5 chr1 120941330 120941533 -76253899 - B4A SINE B4 -55 237 1 1 1507 577 153 414 0 chr1 120942229 120942386 -76253046 + URR1A DNA MER1_type 1 222 -4 1 1507 1093 288 75 6 chr1 120942605 120942927 -76252505 + MTE2b LTR MaLR 1 344 -35 1 1507 204 158 0 0 chr1 120943766 120943804 -76251628 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1507 477 90 0 0 chr1 120943931 120943998 -76251434 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1507 194 176 20 0 chr1 120944790 120944841 -76250591 + (CGGGG)n Simple_repeat Simple_repeat 3 54 0 1 1507 389 282 19 32 chr1 120944841 120944995 -76250437 + GA-rich Low_complexity Low_complexity 5 156 0 1 1507 447 19 0 0 chr1 120945002 120945054 -76250378 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 1 1507 339 25 0 0 chr1 120945907 120945947 -76249485 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 1 1507 390 21 0 0 chr1 120947236 120947283 -76248149 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1507 234 150 0 0 chr1 120949813 120949853 -76245579 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1 1507 203 286 0 0 chr1 120950115 120950185 -76245247 + CT-rich Low_complexity Low_complexity 2 71 0 1 1507 599 98 11 0 chr1 120951015 120951107 -76244325 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1 1507 195 316 0 0 chr1 120951427 120951484 -76243948 - MIR SINE MIR -114 148 92 1 1507 251 339 88 9 chr1 120951872 120951985 -76243447 - RSINE1 SINE B4 -43 122 1 1 1507 2361 164 56 92 chr1 120952208 120952798 -76242634 - RMER15 LTR ERVL -4 571 3 1 1507 571 233 54 0 chr1 120952798 120952922 -76242510 + B1_Mur1 SINE Alu 19 149 0 1 1507 319 331 52 8 chr1 120952978 120953112 -76242320 + RSINE1 SINE B4 4 143 -22 1 1507 1102 213 198 0 chr1 120953857 120954171 -76241261 + ORR1C1 LTR MaLR 3 378 0 1 1507 575 303 80 10 chr1 120954294 120954494 -76240938 - ID_B1 SINE B4 -6 218 5 1 1507 276 266 16 0 chr1 120954643 120954707 -76240725 - B4 SINE B4 -6 286 222 1 1507 892 212 58 10 chr1 120954754 120954959 -76240473 - B3 SINE B2 -1 215 1 1 1507 644 236 50 37 chr1 120954967 120955176 -76240256 - B4A SINE B4 -66 226 2 1 1507 240 217 87 0 chr1 120955294 120955363 -76240069 - MLT1G3 LTR MaLR -100 495 421 1 1507 896 202 0 57 chr1 120955412 120955622 -76239810 + B3A SINE B2 1 198 0 1 1507 315 226 17 113 chr1 120955627 120955742 -76239690 + MT2B LTR ERVL 155 258 -343 1 1507 676 212 0 21 chr1 120955645 120955785 -76239647 + B1_Mur2 SINE Alu 11 147 -2 1 1507 1136 206 10 0 chr1 120955817 120956026 -76239406 - B3 SINE B2 -5 211 1 1 1507 784 160 7 20 chr1 120956091 120956238 -76239194 - B1_Mur4 SINE Alu -4 146 2 1 1507 284 359 95 12 chr1 120956392 120956561 -76238871 + ORR1E LTR MaLR 1 183 -176 1 1507 720 64 0 0 chr1 120956771 120956865 -76238567 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1507 342 0 0 0 chr1 120956865 120956902 -76238530 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1507 303 28 0 0 chr1 120957066 120957102 -76238330 + (ATTG)n Simple_repeat Simple_repeat 3 38 0 1 1507 249 303 53 0 chr1 120957131 120957207 -76238225 + MTEa LTR MaLR 18 97 -282 1 1507 449 262 65 16 chr1 120957209 120957333 -76238099 + MTEa LTR MaLR 59 188 -191 1 1507 226 189 0 0 chr1 120957508 120957545 -76237887 + B1_Mur4 SINE Alu 9 45 -105 1 1507 390 187 25 31 chr1 120957545 120957705 -76237727 + (CATATA)n Simple_repeat Simple_repeat 1 159 0 1 1507 730 278 138 66 chr1 120957912 120958013 -76237419 - MTE2b LTR MaLR -69 310 185 1 1507 1830 200 91 83 chr1 120958013 120958435 -76236997 - MT2A LTR ERVL 0 533 77 1 1507 938 205 48 24 chr1 120958435 120958645 -76236787 + B3 SINE B2 2 216 0 1 1507 1830 200 91 83 chr1 120958645 120958751 -76236681 - MT2A LTR ERVL -457 76 1 1 1507 730 278 138 66 chr1 120958751 120958938 -76236494 - MTE2b LTR MaLR -195 184 1 1 1507 556 213 179 23 chr1 120959370 120959543 -76235889 - ID_B1 SINE B4 -24 200 1 1 1507 261 0 0 0 chr1 120959610 120959639 -76235793 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1507 331 308 195 0 chr1 120959706 120959865 -76235567 + MER21B LTR ERV1 526 715 -148 1 1507 942 258 14 0 chr1 120959865 120960078 -76235354 + ID_B1 SINE B4 2 217 -7 1 1507 478 87 69 42 chr1 120960078 120960222 -76235210 + (CAGA)n Simple_repeat Simple_repeat 1 148 0 1 1507 447 19 0 0 chr1 120960638 120960690 -76234742 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1507 766 266 67 28 chr1 120960724 120960979 -76234453 - B4A SINE B4 -27 265 1 1 1507 644 299 156 13 chr1 120960979 120961293 -76234139 + MLT1E2 LTR MaLR 267 625 -2 1 1507 330 270 50 0 chr1 120961316 120961416 -76234016 + RSINE1 SINE B4 27 131 -34 1 1507 201 254 47 16 chr1 120962183 120962247 -76233185 + MIRb SINE MIR 123 188 -80 1 1507 611 257 129 10 chr1 120962283 120962476 -76232956 - ID_B1 SINE B4 -8 216 1 1 1507 295 95 0 60 chr1 120963063 120963130 -76232302 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 1 1507 463 248 188 0 chr1 120963169 120963302 -76232130 - ID_B1 SINE B4 -66 158 1 1 1507 739 267 50 0 chr1 120963564 120963766 -76231666 + ID_B1 SINE B4 4 215 -9 1 1507 399 217 47 58 chr1 120963895 120964085 -76231347 + B3 SINE B2 9 187 -8 1 1507 204 40 0 0 chr1 120964086 120964111 -76231321 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1507 504 144 21 0 chr1 120964164 120964261 -76231171 + RMER1B Other Other 956 1054 -12 1 1507 839 275 136 65 chr1 120964226 120964763 -76230669 + L1MA6 LINE L1 5724 6298 -2 1 1507 289 241 161 0 chr1 120964937 120965024 -76230408 + RSINE1 SINE B4 8 108 -57 1 1507 531 243 84 14 chr1 120965252 120965394 -76230038 + RSINE1 SINE B4 2 153 -12 1 1507 551 214 83 15 chr1 120965459 120965592 -76229840 - B1F1 SINE Alu -5 144 3 1 1507 268 254 0 40 chr1 120965642 120965716 -76229716 - RSINE1 SINE B4 -48 117 47 1 1507 654 166 6 28 chr1 120965753 120965933 -76229499 + (TA)n Simple_repeat Simple_repeat 1 176 0 1 1507 562 239 9 0 chr1 120965993 120966102 -76229330 - RSINE1 SINE B4 -55 110 1 1 1507 952 220 143 143 chr1 120966146 120966225 -76229207 - MT2A LTR ERVL 0 533 476 1 1507 1171 27 0 39 chr1 120966225 120966378 -76229054 + B1_Mus2 SINE Alu 1 147 0 1 1507 952 220 143 143 chr1 120966378 120966829 -76228603 - MT2A LTR ERVL -58 475 4 1 1507 211 319 133 40 chr1 120966867 120966944 -76228488 - B2_Mm2 SINE B2 -3 192 4 1 1507 510 185 0 42 chr1 120966944 120967040 -76228392 - RSINE1 SINE B4 -69 96 5 1 1507 186 43 0 0 chr1 120967321 120967344 -76228088 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1507 190 375 37 37 chr1 120968195 120968303 -76227129 + MIRb SINE MIR 52 159 -109 1 1507 378 0 0 0 chr1 120968382 120968424 -76227008 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1507 380 295 26 35 chr1 120968431 120968547 -76226885 - RSINE1 SINE B4 -21 144 30 1 1507 451 272 27 87 chr1 120968556 120968569 -76226863 - B2_Mm2 SINE B2 -7 188 176 1 1507 273 57 0 0 chr1 120968569 120968604 -76226828 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1507 192 40 0 0 chr1 120968604 120968628 -76226804 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1507 722 263 1 21 chr1 120968628 120968798 -76226634 - B3A SINE B2 -20 175 15 1 1507 898 232 36 27 chr1 120968798 120969019 -76226413 - B4 SINE B4 -64 228 6 1 1507 212 100 0 48 chr1 120969108 120969150 -76226282 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 1 1507 327 316 86 23 chr1 120969468 120969643 -76225789 - L1MEg LINE L1 -4056 2028 1843 1 1507 317 286 57 0 chr1 120969643 120969748 -76225684 - PB1D10 SINE Alu -6 111 1 1 1507 1017 244 167 12 chr1 120969776 120970051 -76225381 + MTEa LTR MaLR 1 323 -56 1 1507 525 32 0 0 chr1 120970051 120970114 -76225318 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 1 1507 1017 244 167 12 chr1 120970114 120970161 -76225271 + MTEa LTR MaLR 324 372 -7 1 1507 204 125 0 0 chr1 120970412 120970444 -76224988 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 1507 715 232 139 0 chr1 120970462 120970656 -76224776 - ID_B1 SINE B4 -3 221 1 1 1507 4379 34 0 0 chr1 120970846 120971376 -76224056 + L1Md_F2 LINE L1 6042 6571 -11 1 1507 413 223 0 69 chr1 120971946 120972047 -76223385 - PB1D7 SINE Alu -3 117 24 1 1507 366 248 60 26 chr1 120972240 120972356 -76223076 + ID_B1 SINE B4 82 201 -23 1 1507 810 81 0 0 chr1 120972377 120972488 -76222944 + (GGA)n Simple_repeat Simple_repeat 2 112 0 1 1507 453 36 0 0 chr1 120972987 120973042 -76222390 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1507 595 265 46 0 chr1 120973042 120973193 -76222239 - RSINE1 SINE B4 -4 161 4 1 1507 461 279 246 0 chr1 120973194 120973373 -76222059 - ID_B1 SINE B4 -1 223 1 1 1507 293 169 15 15 chr1 120973537 120973603 -76221829 - L2c LINE L2 -230 3157 3092 1 1507 847 218 11 11 chr1 120974317 120974498 -76220934 + ID_B1 SINE B4 44 224 0 1 1507 273 210 0 0 chr1 120975066 120975128 -76220304 + (CCA)n Simple_repeat Simple_repeat 1 62 0 1 1507 343 291 0 80 chr1 120975146 120975258 -76220174 - RSINE1 SINE B4 -60 105 3 1 1507 366 289 32 187 chr1 120975316 120975369 -76220063 - B4 SINE B4 -26 266 220 1 1507 543 162 24 79 chr1 120975369 120975496 -76219936 - PB1D9 SINE Alu 0 120 1 1 1507 395 251 111 46 chr1 120975496 120975651 -76219781 - B4A SINE B4 -72 220 88 1 1507 758 226 35 35 chr1 120975651 120975853 -76219579 - B3 SINE B2 -14 202 1 1 1507 366 289 32 187 chr1 120975853 120975958 -76219474 - B4 SINE B4 -197 95 1 1 1507 754 163 0 43 chr1 120975971 120975986 -76219446 - B1_Mur1 SINE Alu 0 149 140 1 1507 225 0 0 0 chr1 120975986 120976011 -76219421 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1507 754 163 0 43 chr1 120976011 120976136 -76219296 - B1_Mur1 SINE Alu -10 139 15 1 1507 495 230 48 0 chr1 120976137 120976263 -76219169 - ID_B1 SINE B4 0 224 93 1 1507 284 250 60 0 chr1 120976589 120976673 -76218759 - B1F2 SINE Alu -58 91 3 1 1507 345 334 54 44 chr1 120976860 120977083 -76218349 - MLT1G LTR MaLR -258 297 74 1 1507 283 246 14 28 chr1 120977294 120977365 -76218067 - B4 SINE B4 -8 284 215 1 1507 340 292 131 120 chr1 120977380 120977563 -76217869 - B3A SINE B2 -7 191 7 1 1507 434 311 168 20 chr1 120977552 120977749 -76217683 - B4 SINE B4 -59 233 8 1 1507 409 321 14 51 chr1 120977884 120978022 -76217410 + RSINE1 SINE B4 1 133 -32 1 1507 760 154 24 96 chr1 120978127 120978335 -76217097 - B2_Mm2 SINE B2 -2 193 1 1 1507 759 246 49 0 chr1 120978335 120978518 -76216914 - B3A SINE B2 -5 193 2 1 1507 347 250 0 33 chr1 120978576 120978667 -76216765 - RSINE1 SINE B4 -34 131 44 1 1507 204 158 0 0 chr1 120978686 120978724 -76216708 + CT-rich Low_complexity Low_complexity 1 38 0 1 1507 405 314 40 8 chr1 120978730 120978855 -76216577 - ID_B1 SINE B4 -2 222 94 1 1507 329 278 190 34 chr1 120979386 120979448 -76215984 + ID SINE ID 13 81 -143 1 188 387 0 0 0 chr1 120979448 120979491 -76215941 + (CAA)n Simple_repeat Simple_repeat 3 45 0 1 1508 582 187 0 0 chr1 120979500 120979607 -76215825 + PB1D9 SINE Alu 9 115 -5 1 1508 396 0 0 0 chr1 120979679 120979723 -76215709 + (TTA)n Simple_repeat Simple_repeat 1 44 0 1 1508 402 271 97 8 chr1 120979725 120979737 -76215695 - RSINE1 SINE B4 -8 157 146 1 1508 271 22 0 80 chr1 120979737 120979787 -76215645 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 1 1508 402 271 97 8 chr1 120979787 120979908 -76215524 - RSINE1 SINE B4 -20 145 12 1 1508 746 222 95 0 chr1 120980041 120980230 -76215202 - ID_B1 SINE B4 -16 208 2 1 1508 441 205 0 0 chr1 120980797 120980909 -76214523 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1508 310 287 11 11 chr1 120981235 120981323 -76214109 - PB1D10 SINE Alu -7 110 23 1 1508 627 51 0 0 chr1 120981793 120981872 -76213560 + (TCCCC)n Simple_repeat Simple_repeat 4 82 0 1 1508 2124 119 9 9 chr1 120982178 120982517 -76212915 - RLTR28 LTR ERVL -164 360 22 1 1508 733 243 54 5 chr1 120982582 120982785 -76212647 + ORR1D2 LTR MaLR 155 367 -3 1 1508 252 247 55 0 chr1 120982795 120982868 -76212564 + MLT1E1 LTR MaLR 463 539 -115 1 1508 894 203 5 11 chr1 120982866 120983050 -76212382 - B3 SINE B2 -32 184 2 1 1508 497 58 14 0 chr1 120983205 120983274 -76212158 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 1 1508 213 295 66 9 chr1 120983287 120983393 -76212039 - RSINE1 SINE B4 -11 154 43 1 1508 469 222 17 0 chr1 120983469 120983586 -76211846 - B3 SINE B2 -97 119 1 1 1508 551 229 74 107 chr1 120983805 120984020 -76211412 + RMER15 LTR ERVL 322 529 -46 1 1508 224 227 51 39 chr1 120984136 120984214 -76211218 + B3A SINE B2 2 80 -118 1 1508 548 225 24 24 chr1 120984145 120984268 -76211164 + RSINE1 SINE B4 13 135 -30 1 1508 244 326 10 40 chr1 120984608 120984707 -76210725 - PB1D10 SINE Alu -5 112 17 1 1508 883 181 103 10 chr1 120984740 120984935 -76210497 - B3 SINE B2 -2 214 2 1 1508 196 30 61 0 chr1 120984948 120984981 -76210451 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1508 805 268 13 18 chr1 120985098 120985322 -76210110 - ID_B1 SINE B4 0 224 2 1 1508 405 0 0 0 chr1 120985454 120985499 -76209933 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1508 272 226 11 0 chr1 120986248 120986341 -76209091 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1508 291 224 13 13 chr1 120986348 120986425 -76209007 - B4A SINE B4 0 292 216 1 1508 646 269 45 49 chr1 120986470 120986693 -76208739 - B4 SINE B4 -68 224 3 1 1508 646 250 0 7 chr1 120987044 120987189 -76208243 - L1MC4a LINE L1 -11 7871 7728 1 1508 222 245 0 0 chr1 120987277 120987326 -76208106 + (TTA)n Simple_repeat Simple_repeat 2 50 0 1 1508 544 253 104 12 chr1 120987338 120987502 -76207930 - ID_B1 SINE B4 -7 217 39 1 1508 375 202 0 0 chr1 120987503 120987612 -76207820 + (CAT)n Simple_repeat Simple_repeat 2 110 0 1 1508 692 246 0 0 chr1 120987612 120987754 -76207678 - B1_Mur1 SINE Alu -6 143 2 1 1508 250 281 11 11 chr1 120987763 120987853 -76207579 - L1MC4a LINE L1 -477 7565 7476 1 1508 1017 217 34 0 chr1 120987855 120988062 -76207370 + B3 SINE B2 3 216 0 1 1508 461 175 115 10 chr1 120988087 120988191 -76207241 + PB1D9 SINE Alu 1 115 -5 1 1508 564 15 0 0 chr1 120988222 120988287 -76207145 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1508 230 282 102 31 chr1 120988361 120988489 -76206943 - L1MC4a LINE L1 -694 7348 7212 1 1508 360 0 0 0 chr1 120988585 120988625 -76206807 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1 1508 744 212 7 0 chr1 120988625 120988762 -76206670 - RSINE1 SINE B4 -25 140 3 1 1508 342 333 77 16 chr1 120988762 120988945 -76206487 - L1MC4a LINE L1 -681 7201 7008 1 1508 470 266 144 31 chr1 120989145 120989339 -76206093 - B3 SINE B2 0 216 1 1 1508 329 223 50 2 chr1 120989347 120989445 -76205987 - L1MC4a LINE L1 -1159 6836 6686 1 1508 805 290 51 18 chr1 120989446 120989720 -76205712 + B4A SINE B4 4 286 -6 1 1508 279 0 0 0 chr1 120989735 120989766 -76205666 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1508 22 0 0 0 chr1 120989994 120990016 -76205416 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 953 264 43 32 chr1 120990058 120990336 -76205096 - B4A SINE B4 -5 287 7 1 1508 303 254 0 0 chr1 120990953 120991020 -76204412 - ID4_ SINE ID -12 71 5 1 1508 273 320 112 0 chr1 120991040 120991165 -76204267 - B1_Mur3 SINE Alu 0 149 11 1 1508 677 279 48 21 chr1 120991056 120991243 -76204189 - ID_B1 SINE B4 -24 200 9 1 1508 318 286 87 8 chr1 120991260 120991387 -76204045 - B1F SINE Alu -12 137 1 1 1508 821 224 28 6 chr1 120991493 120991673 -76203759 + B3A SINE B2 5 188 -10 1 1508 535 330 43 34 chr1 120991758 120991965 -76203467 - B4A SINE B4 0 292 84 1 1508 381 188 0 0 chr1 120992009 120992089 -76203343 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1508 585 245 12 62 chr1 120992089 120992250 -76203182 - RSINE1 SINE B4 0 165 13 1 1508 284 333 11 11 chr1 120992237 120992331 -76203101 - B4A SINE B4 -192 100 7 1 1508 225 0 0 0 chr1 120993177 120993202 -76202230 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 1 1508 335 284 0 35 chr1 120993910 120994023 -76201409 + CT-rich Low_complexity Low_complexity 1 109 0 1 1508 306 73 0 0 chr1 120994111 120994152 -76201280 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1508 294 250 22 11 chr1 120995214 120995303 -76200129 + MIRb SINE MIR 53 142 -126 1 1508 580 277 130 19 chr1 120995618 120995879 -76199553 - B4A SINE B4 0 292 3 1 1508 287 284 8 0 chr1 120996376 120996503 -76198929 + (CA)n Simple_repeat Simple_repeat 1 128 0 1 1508 572 325 44 15 chr1 120996569 120996772 -76198660 + MamRep564 Unknown Unknown 17 225 -132 1 1508 833 279 41 67 chr1 120997347 120997442 -76197990 + B4 SINE B4 2 86 -206 1 1508 243 0 0 0 chr1 120997442 120997469 -76197963 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1508 833 279 41 67 chr1 120997469 120997642 -76197790 + B4 SINE B4 87 263 -29 1 1508 230 283 0 0 chr1 120997633 120997693 -76197739 - B4A SINE B4 -152 140 81 1 1508 627 221 0 10 chr1 120997710 120997845 -76197587 - B1_Mur1 SINE Alu -23 126 1 1 1508 610 311 25 69 chr1 120997845 120997941 -76197491 - B4 SINE B4 -203 89 3 1 1508 605 259 0 36 chr1 120997984 120998124 -76197308 + RSINE1 SINE B4 31 165 0 1 1508 188 299 11 11 chr1 120998131 120998310 -76197122 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1508 288 264 17 17 chr1 120998341 120998518 -76196914 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1508 198 280 17 17 chr1 120998542 120998720 -76196712 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1508 249 271 17 17 chr1 120998792 120998972 -76196460 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1508 206 95 0 23 chr1 120999359 120999402 -76196030 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1508 429 20 0 0 chr1 120999536 120999586 -76195846 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1508 645 273 0 0 chr1 120999587 120999726 -76195706 - RSINE1 SINE B4 -24 141 3 1 1508 236 259 173 15 chr1 120999759 120999892 -76195540 - B4 SINE B4 -6 286 133 1 1508 1347 249 34 11 chr1 121000113 121000463 -76194969 - MTEa LTR MaLR 0 379 22 1 1508 916 264 18 18 chr1 121000640 121000864 -76194568 - ID_B1 SINE B4 0 224 1 2 1508 685 231 0 0 chr1 121001045 121001166 -76194266 + B3A SINE B2 5 125 -73 3 1508 363 78 0 0 chr1 121001167 121001218 -76194214 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1508 360 0 0 0 chr1 121001243 121001283 -76194149 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 1508 723 156 62 15 chr1 121001285 121001415 -76194017 - B2_Mm2 SINE B2 -45 150 15 6 1508 282 327 9 19 chr1 121001555 121001661 -76193771 - MTEa LTR MaLR -3 376 272 7 1508 745 262 43 78 chr1 121001907 121002139 -76193293 + B4A SINE B4 48 271 -21 8 1508 237 159 0 0 chr1 121002195 121002239 -76193193 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1508 354 134 0 0 chr1 121002239 121002306 -76193126 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1508 324 0 0 0 chr1 121002503 121002539 -76192893 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1508 683 33 11 0 chr1 121002692 121002782 -76192650 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1508 243 0 0 0 chr1 121003372 121003399 -76192033 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1508 688 258 144 51 chr1 121003411 121003668 -76191764 - B4 SINE B4 -11 281 1 1 1508 1006 88 0 42 chr1 121003839 121003981 -76191451 - B1_Mus1 SINE Alu -12 136 1 1 1508 199 281 124 31 chr1 121004139 121004277 -76191155 + MIRc SINE MIR 13 177 -99 1 1508 771 169 218 6 chr1 121004593 121004772 -76190660 - ID_B1 SINE B4 0 224 8 1 1508 585 274 146 19 chr1 121005768 121005970 -76189462 + B4A SINE B4 3 230 -62 1 1508 431 341 44 78 chr1 121005970 121006240 -76189192 + B4 SINE B4 2 262 -30 1 1508 504 45 0 0 chr1 121006252 121006319 -76189113 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1508 183 100 0 0 chr1 121006429 121006459 -76188973 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1508 459 0 0 0 chr1 121006459 121006509 -76188923 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1508 310 243 71 18 chr1 121006967 121007080 -76188352 + ID_B1 SINE B4 2 120 -104 2 1508 365 272 2 41 chr1 121007420 121007558 -76187874 + Lx8 LINE L1 6849 6994 -479 2 1508 813 303 61 18 chr1 121007606 121007935 -76187497 + Lx8 LINE L1 7098 7440 -33 2 1508 817 218 117 80 chr1 121008112 121008376 -76187056 - MTD LTR MaLR 0 419 146 2 1508 251 234 0 33 chr1 121008525 121008676 -76186756 + CT-rich Low_complexity Low_complexity 1 145 0 2 1508 209 183 50 0 chr1 121008648 121008708 -76186724 + (CTCTG)n Simple_repeat Simple_repeat 3 65 0 2 1508 769 185 68 0 chr1 121008861 121009007 -76186425 - MTD LTR MaLR -262 157 2 2 1508 386 280 121 70 chr1 121009119 121009392 -76186040 - MLT1H1 LTR MaLR -167 388 102 2 1508 400 304 0 26 chr1 121009666 121009781 -76185651 - PB1D10 SINE Alu -3 114 3 2 1508 920 259 120 19 chr1 121009970 121010311 -76185121 + MTE2a LTR MaLR 29 370 0 3 1508 537 195 4 0 chr1 121010311 121010540 -76184892 + (CA)n Simple_repeat Simple_repeat 1 230 0 3 1508 305 93 0 23 chr1 121010541 121010585 -76184847 + HAL1-3A_ME LINE L1 1976 2018 -840 3 1508 243 125 0 0 chr1 121010916 121010956 -76184476 + (TCC)n Simple_repeat Simple_repeat 3 42 0 3 1508 535 280 0 64 chr1 121010975 121011116 -76184316 - B4 SINE B4 -2 290 159 3 1508 189 0 0 0 chr1 121011155 121011176 -76184256 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1508 672 13 0 0 chr1 121011176 121011252 -76184180 + (GA)n Simple_repeat Simple_repeat 1 77 0 3 1508 288 0 0 0 chr1 121011347 121011379 -76184053 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1508 590 255 122 53 chr1 121011407 121011729 -76183703 - B4A SINE B4 -2 290 1 3 1508 233 296 46 97 chr1 121013446 121013681 -76181751 - RSINE1 SINE B4 -16 276 63 3 1508 224 319 41 14 chr1 121013749 121013822 -76181610 - RSINE1 SINE B4 -71 94 20 3 1508 755 236 30 40 chr1 121013810 121014009 -76181423 - ID_B1 SINE B4 -26 198 2 3 1508 772 186 28 0 chr1 121014311 121014456 -76180976 + B1_Mur4 SINE Alu 1 149 -1 4 1508 218 323 0 107 chr1 121014488 121014675 -76180757 + (TATG)n Simple_repeat Simple_repeat 4 170 0 4 1508 202 331 0 99 chr1 121014980 121015161 -76180271 + (TATG)n Simple_repeat Simple_repeat 4 166 0 4 1508 373 260 0 106 chr1 121015091 121015289 -76180143 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 4 1508 459 257 0 103 chr1 121015303 121015642 -76179790 + (TATATG)n Simple_repeat Simple_repeat 1 304 0 4 1508 858 255 67 39 chr1 121015715 121015997 -76179435 - B4 SINE B4 -2 290 1 4 1508 228 314 92 46 chr1 121016027 121016157 -76179275 - L2c LINE L2 -2 3385 3250 4 1508 191 292 30 15 chr1 121016818 121016884 -76178548 - MIRb SINE MIR -68 200 134 4 1508 1578 218 42 31 chr1 121017064 121017424 -76178008 + MTE2b LTR MaLR 16 379 0 4 1508 582 318 23 6 chr1 121018036 121018213 -76177219 + B3A SINE B2 1 180 -18 4 1508 738 233 36 78 chr1 121018509 121018728 -76176704 + B4 SINE B4 6 215 -77 4 1508 557 219 18 146 chr1 121018766 121018937 -76176495 + B4 SINE B4 128 276 -16 5 1508 303 122 0 0 chr1 121018940 121018989 -76176443 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1508 22 56 0 0 chr1 121019042 121019078 -76176354 + AT_rich Low_complexity Low_complexity 1 36 0 5 1508 574 170 40 0 chr1 121019097 121019197 -76176235 - B1_Mur3 SINE Alu -43 106 3 5 1508 403 271 19 9 chr1 121019103 121019211 -76176221 - ID_B1 SINE B4 -46 178 70 5 1508 26 64 0 0 chr1 121019244 121019291 -76176141 + AT_rich Low_complexity Low_complexity 1 47 0 5 1508 473 283 0 122 chr1 121019295 121019366 -76176066 - RSINE1 SINE B4 -4 161 91 5 1508 345 47 0 0 chr1 121019366 121019409 -76176023 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1508 473 283 0 122 chr1 121019409 121019518 -76175914 - RSINE1 SINE B4 -75 90 3 5 1508 775 274 54 67 chr1 121020043 121020266 -76175166 + B4A SINE B4 55 274 -18 5 1508 288 0 0 0 chr1 121020275 121020307 -76175125 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1508 545 212 0 63 chr1 121020334 121020460 -76174972 + B1_Mur4 SINE Alu 33 150 0 6 1508 859 300 13 98 chr1 121020730 121021048 -76174384 + B4A SINE B4 1 291 -1 6 1508 1140 253 26 99 chr1 121021484 121021825 -76173607 - ORR1E LTR MaLR -4 355 32 6 1508 597 120 0 79 chr1 121021825 121021952 -76173480 - L1Md_F2 LINE L1 0 6582 6466 6 1508 1140 253 26 99 chr1 121021952 121021992 -76173440 - ORR1E LTR MaLR -328 31 2 6 1508 580 326 65 52 chr1 121022009 121022488 -76172944 + L1M5 LINE L1 2376 2860 -3286 6 1508 1486 214 78 98 chr1 121022597 121022786 -76172646 - MTD LTR MaLR -24 395 209 6 1508 1021 108 0 12 chr1 121022786 121022955 -76172477 + (TTCC)n Simple_repeat Simple_repeat 1 167 0 6 1508 1486 214 78 98 chr1 121022955 121022971 -76172461 - MTD LTR MaLR -211 208 208 6 1508 738 206 22 0 chr1 121022971 121023107 -76172325 - B1_Mur2 SINE Alu -6 143 5 6 1508 1486 214 78 98 chr1 121023107 121023299 -76172133 - MTD LTR MaLR -211 208 5 6 1508 359 362 40 13 chr1 121023354 121023505 -76171927 + L1M5 LINE L1 3050 3204 -2942 6 1508 432 253 0 21 chr1 121023613 121023710 -76171722 + B4 SINE B4 43 137 -155 6 1508 231 191 0 0 chr1 121023812 121023875 -76171557 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 7 1508 504 154 24 0 chr1 121023918 121024041 -76171391 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 7 1508 311 240 13 13 chr1 121024129 121024205 -76171227 + B1_Mur4 SINE Alu 75 150 0 7 1508 373 305 42 63 chr1 121024265 121024454 -76170978 + HAL1 LINE L1 1188 1372 -1135 7 1508 820 226 185 43 chr1 121024630 121024884 -76170548 + B4A SINE B4 3 292 0 7 1508 706 185 11 6 chr1 121024886 121025065 -76170367 + (CATA)n Simple_repeat Simple_repeat 1 180 0 7 1508 446 210 17 22 chr1 121025082 121025262 -76170170 + (CATA)n Simple_repeat Simple_repeat 2 180 0 7 1508 515 301 26 19 chr1 121025303 121025459 -76169973 - MLT1F2 LTR MaLR 0 560 404 7 1508 436 297 9 9 chr1 121025553 121025665 -76169767 - B4 SINE B4 -176 116 5 7 1508 340 262 355 11 chr1 121025661 121025850 -76169582 - MLT1F2 LTR MaLR -197 351 98 7 1508 3078 33 3 0 chr1 121026027 121026393 -76169039 - L1Md_F2 LINE L1 0 6582 6216 7 1508 299 221 0 0 chr1 121026397 121026465 -76168967 + HAL1 LINE L1 1677 1744 -763 7 1508 720 281 82 47 chr1 121026932 121027272 -76168160 + ORR1E LTR MaLR 8 359 0 7 1508 387 304 51 0 chr1 121027516 121027654 -76167778 - RSINE1 SINE B4 -19 146 2 7 1508 346 261 56 56 chr1 121027658 121027784 -76167648 - L1MC5 LINE L1 -287 7674 7549 8 1508 216 0 0 0 chr1 121027792 121027816 -76167616 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1508 365 324 19 29 chr1 121027852 121027957 -76167475 - RSINE1 SINE B4 -60 105 2 8 1508 568 156 0 48 chr1 121028122 121028311 -76167121 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1508 642 277 26 75 chr1 121028379 121028684 -76166748 - B4A SINE B4 0 292 3 8 1508 200 348 67 42 chr1 121028784 121028904 -76166528 - MIR3 SINE MIR -71 137 15 8 1508 475 348 16 22 chr1 121029143 121029325 -76166107 - B4A SINE B4 -41 251 71 8 1508 1126 123 81 34 chr1 121030100 121030335 -76165097 + Lx9 LINE L1 7398 7643 -1 8 1508 742 216 21 7 chr1 121030492 121030652 -76164780 + ID_B1 SINE B4 84 248 -44 8 1508 254 241 0 0 chr1 121030898 121030952 -76164480 - MIRm SINE MIR -137 139 86 8 1508 233 182 36 18 chr1 121031419 121031475 -76163957 + B4 SINE B4 184 240 -52 9 1508 180 0 0 0 chr1 121031477 121031497 -76163935 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 9 1508 965 26 0 0 chr1 121031560 121031677 -76163755 + B1_Mm SINE Alu 1 117 -30 9 1508 417 20 0 0 chr1 121031687 121031737 -76163695 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1508 647 224 0 0 chr1 121031744 121031860 -76163572 - RSINE1 SINE B4 -47 118 3 9 1508 319 370 65 0 chr1 121031879 121032033 -76163399 + MER5A1 DNA MER1_type 2 165 -1 9 1508 638 198 18 18 chr1 121033534 121033764 -76161668 + CT-rich Low_complexity Low_complexity 1 230 0 9 1508 541 285 0 9 chr1 121033767 121033903 -76161529 - ID_B1 SINE B4 -19 205 77 9 1508 627 255 83 0 chr1 121033915 121034072 -76161360 - B3 SINE B2 -2 214 45 9 1508 229 325 62 62 chr1 121034252 121034380 -76161052 + MT-int LTR MaLR 423 550 -548 9 1508 632 311 106 0 chr1 121034642 121034822 -76160610 + B4 SINE B4 34 232 -60 1 1508 1981 142 25 57 chr1 121034823 121035189 -76160243 - RLTR15 LTR ERVK 0 359 6 1 1508 312 27 0 0 chr1 121035405 121035442 -76159990 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1508 283 291 9 72 chr1 121035449 121035560 -76159872 - B4A SINE B4 -187 105 2 9 1508 229 313 0 15 chr1 121035693 121035761 -76159671 + CT-rich Low_complexity Low_complexity 4 70 0 1 1508 345 282 0 13 chr1 121035768 121035847 -76159585 - PB1D10 SINE Alu -18 99 22 1 1508 647 150 37 8 chr1 121035797 121035950 -76159482 - MTC LTR MaLR -73 346 196 1 1508 1103 272 15 45 chr1 121035961 121036296 -76159136 - Lx6 LINE L1 -26 7434 7110 1 1508 787 281 5 30 chr1 121036414 121036616 -76158816 + B3A SINE B2 2 198 0 1 1508 229 128 26 0 chr1 121036673 121036712 -76158720 - MTE2b LTR MaLR 0 379 340 1 1508 870 241 94 80 chr1 121036944 121037232 -76158200 + B4 SINE B4 1 292 0 1 1508 189 0 0 0 chr1 121038167 121038188 -76157244 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1508 999 277 46 27 chr1 121038219 121038482 -76156950 - B4 SINE B4 0 292 25 1 1508 324 0 0 0 chr1 121038484 121038520 -76156912 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1508 231 167 0 0 chr1 121039096 121039138 -76156294 + CT-rich Low_complexity Low_complexity 1 42 0 1 1508 560 261 165 29 chr1 121039155 121039325 -76156107 - B4 SINE B4 0 292 100 1 1508 582 175 17 17 chr1 121039341 121039521 -76155911 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1508 516 180 27 3 chr1 121039534 121039871 -76155561 + (CA)n Simple_repeat Simple_repeat 1 345 0 1 1508 225 0 0 0 chr1 121039870 121039895 -76155537 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1508 325 156 31 15 chr1 121039897 121039962 -76155470 + HAL1-3A_ME LINE L1 1976 2041 -817 1 1508 294 289 48 0 chr1 121040543 121040647 -76154785 + MER121 Unknown Unknown 152 260 -152 1 1508 445 281 0 0 chr1 121041124 121041220 -76154212 + B4A SINE B4 118 213 -79 1 1508 195 42 0 0 chr1 121041220 121041244 -76154188 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 1 1508 349 221 0 0 chr1 121041264 121041332 -76154100 + B4A SINE B4 14 81 -211 1 1508 304 285 142 7 chr1 121041327 121041421 -76154011 + PB1D9 SINE Alu 16 117 -32 1 1508 384 323 78 78 chr1 121041430 121041542 -76153890 + B4A SINE B4 107 203 -89 1 1508 670 255 87 48 chr1 121041542 121041748 -76153684 + B3 SINE B2 2 215 -1 1 1508 384 314 79 67 chr1 121041748 121041828 -76153604 + B4A SINE B4 204 292 0 1 1508 248 273 0 0 chr1 121041845 121041900 -76153532 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1508 230 0 33 0 chr1 121041901 121041931 -76153501 + (CAT)n Simple_repeat Simple_repeat 2 32 0 1 1508 353 304 19 19 chr1 121042191 121042295 -76153137 - RMER30 DNA MER1_type -1 201 98 1 1508 492 62 0 0 chr1 121042299 121042363 -76153069 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 1 1508 418 209 0 0 chr1 121042418 121042485 -76152947 + RMER30 DNA MER1_type 20 86 -116 1 1508 446 285 15 61 chr1 121042496 121042627 -76152805 + RSINE1 SINE B4 6 130 -35 1 1508 388 253 0 35 chr1 121042657 121042669 -76152763 - Charlie12 DNA MER1_type -2760 113 103 1 1508 672 220 114 57 chr1 121042669 121042834 -76152598 + B3 SINE B2 2 185 -31 1 1508 222 62 0 0 chr1 121042834 121042866 -76152566 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1508 672 220 114 57 chr1 121042866 121042893 -76152539 + B3 SINE B2 186 204 -12 1 1508 356 252 84 37 chr1 121042893 121042987 -76152445 + RMER30 DNA MER1_type 102 201 -1 1 1508 1234 215 93 24 chr1 121043731 121044022 -76151410 + MTE2b LTR MaLR 2 312 -67 1 1508 1388 220 126 16 chr1 121044025 121044390 -76151042 - MTD LTR MaLR -1 418 14 1 1508 296 250 28 0 chr1 121044387 121044459 -76150973 + MTE2b LTR MaLR 305 378 -1 1 1508 225 0 0 0 chr1 121044756 121044781 -76150651 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1508 213 39 0 0 chr1 121044781 121044806 -76150626 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1508 2245 215 2 0 chr1 121045425 121045843 -76149589 - MTD LTR MaLR 0 419 1 1 1508 1453 226 88 3 chr1 121046418 121046759 -76148673 + ORR1D2 LTR MaLR 1 370 0 1 1508 392 293 8 87 chr1 121046972 121047099 -76148333 - B4 SINE B4 -165 127 11 1 1508 245 289 11 43 chr1 121047108 121047202 -76148230 + CT-rich Low_complexity Low_complexity 1 91 0 1 1508 540 217 99 8 chr1 121047707 121047828 -76147604 + RSINE1 SINE B4 3 134 -31 1 1508 396 0 0 0 chr1 121047833 121047877 -76147555 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1508 728 225 105 16 chr1 121047917 121048107 -76147325 - ID_B1 SINE B4 -16 208 2 1 1508 341 188 44 66 chr1 121048267 121048358 -76147074 + B4 SINE B4 4 92 -200 1 1508 784 303 25 0 chr1 121048368 121048566 -76146866 + ID_B1 SINE B4 12 214 -10 1 1508 518 313 49 10 chr1 121048601 121048805 -76146627 + B4 SINE B4 69 290 -2 1 1508 234 0 0 0 chr1 121048819 121048845 -76146587 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1508 1036 226 40 191 chr1 121048848 121049292 -76146140 - MTE2a LTR MaLR -2 377 1 1 1508 348 333 38 24 chr1 121049597 121049938 -76145494 + L1M5 LINE L1 4988 5333 -813 1 1508 522 152 0 0 chr1 121049940 121050032 -76145400 + A-rich Low_complexity Low_complexity 1 92 0 1 1508 523 212 110 26 chr1 121050035 121050190 -76145242 + ID_B1 SINE B4 9 176 -48 1 1508 248 267 0 32 chr1 121050218 121050280 -76145152 + polypurine Low_complexity Low_complexity 1 60 0 1 1508 254 250 36 159 chr1 121050336 121050474 -76144958 + B2_Mm2 SINE B2 55 175 -20 1 1508 227 322 123 8 chr1 121050967 121051089 -76144343 - B2_Mm2 SINE B2 -6 189 54 1 1508 627 195 17 8 chr1 121051005 121051124 -76144308 - RSINE1 SINE B4 -26 139 20 1 1508 311 28 0 0 chr1 121051304 121051340 -76144092 + L1Md_T LINE L1 5551 5586 -297 1 1508 9093 9 0 0 chr1 121051340 121052336 -76143096 + L1Md_T LINE L1 5587 6582 0 1 1508 473 267 0 29 chr1 121052345 121052449 -76142983 - B1F2 SINE Alu -48 101 1 1 1508 213 316 0 25 chr1 121052458 121052539 -76142893 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1508 687 288 27 113 chr1 121052548 121052849 -76142583 - B4A SINE B4 -15 277 3 1 1508 318 115 0 0 chr1 121052859 121052920 -76142512 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1508 369 0 0 0 chr1 121052920 121052960 -76142472 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1508 837 218 0 0 chr1 121052960 121053102 -76142330 - B1_Mur2 SINE Alu -6 143 2 1 1508 555 186 0 64 chr1 121053180 121053289 -76142143 - B3 SINE B2 -111 105 4 1 1508 339 206 28 61 chr1 121053334 121053436 -76141996 + B4 SINE B4 2 101 -191 1 1508 396 0 0 0 chr1 121053508 121053552 -76141880 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1508 1858 149 78 15 chr1 121053595 121053929 -76141503 - ORR1C2 LTR MaLR -29 355 1 1 1508 180 273 126 76 chr1 121054266 121054385 -76141047 - L2 LINE L2 -592 2827 2703 1 1508 595 128 18 0 chr1 121056089 121056198 -76139234 + (TTCTC)n Simple_repeat Simple_repeat 3 113 0 1 1508 792 196 7 34 chr1 121056198 121056346 -76139086 - B1_Mur2 SINE Alu -5 144 1 1 1508 401 219 8 136 chr1 121056346 121056374 -76139058 - MT2B LTR ERVL -448 153 143 1 1508 216 265 29 0 chr1 121056868 121056936 -76138496 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1508 810 271 0 132 chr1 121056951 121057045 -76138387 - B4A SINE B4 -4 288 212 1 1508 587 267 9 84 chr1 121057045 121057258 -76138174 - B3A SINE B2 0 198 2 1 1508 369 0 0 0 chr1 121057260 121057301 -76138131 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1508 594 0 0 0 chr1 121057301 121057366 -76138066 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1508 810 271 0 132 chr1 121057366 121057501 -76137931 - B4A SINE B4 -81 211 87 1 1508 346 294 44 106 chr1 121057548 121057862 -76137570 - B4 SINE B4 -14 278 1 1 1508 427 182 43 43 chr1 121057873 121057965 -76137467 - B4A SINE B4 -199 93 2 1 1508 235 315 106 29 chr1 121057997 121058132 -76137300 - MIRb SINE MIR -46 222 75 1 1508 413 309 46 25 chr1 121058132 121058227 -76137205 + RMER30 DNA MER1_type 2 98 -104 1 1508 315 0 0 0 chr1 121058227 121058262 -76137170 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1508 413 309 46 25 chr1 121058262 121058362 -76137070 + RMER30 DNA MER1_type 99 200 -2 1 1508 235 315 106 29 chr1 121058362 121058396 -76137036 - MIRb SINE MIR -194 74 40 1 1508 321 310 12 25 chr1 121058744 121058906 -76136526 + (CA)n Simple_repeat Simple_repeat 1 160 0 1 1508 334 302 35 29 chr1 121058937 121059111 -76136321 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 1 1508 1136 254 147 20 chr1 121059126 121059480 -76135952 - MTD LTR MaLR -15 404 6 1 1508 640 252 0 39 chr1 121059484 121059637 -76135795 + B1_Mur1 SINE Alu 3 149 0 1 1508 353 209 0 21 chr1 121059649 121059742 -76135690 + (CATA)n Simple_repeat Simple_repeat 4 94 0 1 1508 189 0 0 0 chr1 121060176 121060197 -76135235 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1508 302 214 11 11 chr1 121060705 121060744 -76134688 + polypurine Low_complexity Low_complexity 1 39 0 1 1508 988 111 28 25 chr1 121060744 121060923 -76134509 + (CAGAGA)n Simple_repeat Simple_repeat 1 231 -36 1 1508 302 214 11 11 chr1 121060923 121060985 -76134447 + GA-rich Low_complexity Low_complexity 28 89 0 1 1508 988 111 28 25 chr1 121060985 121061011 -76134421 + (CAGAGA)n Simple_repeat Simple_repeat 232 267 0 1 1508 425 277 37 81 chr1 121062555 121062716 -76132716 - RSINE1 SINE B4 -10 155 2 1 1508 321 242 86 0 chr1 121063387 121063489 -76131943 - B1F2 SINE Alu -24 125 15 1 1508 747 78 0 0 chr1 121063490 121063593 -76131839 + (TCCC)n Simple_repeat Simple_repeat 2 104 0 1 1508 898 226 102 5 chr1 121063622 121063818 -76131614 - B3 SINE B2 -1 215 1 1 1508 312 275 111 80 chr1 121063818 121063980 -76131452 - MLT1B LTR MaLR -214 176 10 1 1508 219 292 0 0 chr1 121064011 121064076 -76131356 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1508 969 267 128 39 chr1 121064491 121064826 -76130606 + MTE2b LTR MaLR 6 370 -9 1 1508 1331 120 41 18 chr1 121064907 121065128 -76130304 - URR1A DNA MER1_type 0 226 1 1 1508 462 124 0 0 chr1 121065572 121065661 -76129771 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1508 263 328 94 35 chr1 121065695 121065897 -76129535 - B4 SINE B4 -75 217 4 2 1508 242 253 184 13 chr1 121066009 121066085 -76129347 - B4 SINE B4 -10 282 194 2 1508 483 18 0 0 chr1 121066165 121066221 -76129211 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1508 1021 215 40 79 chr1 121066221 121066375 -76129057 - B4A SINE B4 -49 243 96 2 1508 986 195 34 10 chr1 121066375 121066582 -76128850 - B3 SINE B2 -3 213 2 2 1508 1021 215 40 79 chr1 121066582 121066680 -76128752 - B4A SINE B4 -197 95 1 2 1508 501 326 38 49 chr1 121066701 121066885 -76128547 + B4 SINE B4 13 194 -98 2 1508 548 89 29 10 chr1 121067760 121067862 -76127570 + (TG)n Simple_repeat Simple_repeat 1 104 0 2 1508 198 158 0 0 chr1 121068491 121068518 -76126914 + polypyrimidine Low_complexity Low_complexity 13 39 0 2 1508 1526 180 142 12 chr1 121068518 121068676 -76126756 + ORR1D1 LTR MaLR 1 164 -210 2 1508 650 75 9 0 chr1 121068676 121068782 -76126650 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 1508 1526 180 142 12 chr1 121068782 121068954 -76126478 + ORR1D1 LTR MaLR 165 374 0 2 1508 218 329 106 0 chr1 121069000 121069085 -76126347 - PB1D7 SINE Alu -26 94 1 2 1508 547 292 68 0 chr1 121069085 121069158 -76126274 - ID SINE ID -141 83 1 2 1508 453 247 200 60 chr1 121069551 121069801 -76125631 + B4 SINE B4 2 286 -6 2 1508 599 232 151 10 chr1 121070581 121070773 -76124659 - ID_B1 SINE B4 -4 220 2 2 1508 344 268 35 26 chr1 121070792 121070907 -76124525 - PB1D10 SINE Alu -1 116 1 2 1508 3250 69 6 97 chr1 121070962 121071457 -76123975 - L1_Mus3 LINE L1 -10 6628 6179 2 1508 423 0 0 0 chr1 121071815 121071862 -76123570 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1508 405 39 0 0 chr1 121071993 121072044 -76123388 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1508 696 306 63 63 chr1 121072072 121072259 -76123173 - B4A SINE B4 0 292 103 2 1508 2182 114 12 9 chr1 121072259 121072587 -76122845 - ORR1A4 LTR MaLR 0 329 1 2 1508 696 306 63 63 chr1 121072587 121072668 -76122764 - B4A SINE B4 -190 102 24 2 1508 1891 158 38 64 chr1 121072798 121073171 -76122261 - ORR1D1 LTR MaLR -11 363 1 2 1508 562 235 114 0 chr1 121073212 121073344 -76122088 + B1_Mur2 SINE Alu 3 149 0 2 1508 290 282 58 25 chr1 121074002 121074122 -76121310 - MER102a DNA MER1_type -172 158 35 2 1508 615 103 0 0 chr1 121074185 121074282 -76121150 + (TCCA)n Simple_repeat Simple_repeat 1 97 0 2 1508 315 298 63 13 chr1 121074372 121074533 -76120899 - L1M5 LINE L1 -1104 5042 4852 2 1508 368 360 97 44 chr1 121074544 121074864 -76120568 - L1M5 LINE L1 -1271 4875 4539 2 1508 418 198 11 44 chr1 121074969 121075059 -76120373 + B4 SINE B4 2 88 -204 2 1508 1064 133 0 6 chr1 121075066 121075126 -76120306 + (CAG)n Simple_repeat Simple_repeat 1 60 0 2 1508 1113 128 0 0 chr1 121075126 121075306 -76120126 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2 1508 1064 133 0 6 chr1 121075306 121075426 -76120006 + (CAG)n Simple_repeat Simple_repeat 1 120 0 2 1508 1071 139 0 0 chr1 121075429 121075609 -76119823 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2 1508 685 323 32 5 chr1 121075612 121075830 -76119602 + B4 SINE B4 69 292 0 2 1508 994 271 124 38 chr1 121076348 121076951 -76118481 + HAL1 LINE L1 1422 2076 -431 2 1508 1258 247 26 103 chr1 121076969 121077317 -76118115 + MTE2b LTR MaLR 5 325 -54 2 1508 215 175 50 0 chr1 121077318 121077358 -76118074 + polypyrimidine Low_complexity Low_complexity 4 45 0 2 1508 257 266 0 45 chr1 121077358 121077425 -76118007 + MTE2b LTR MaLR 314 377 -2 2 1508 304 264 195 16 chr1 121077611 121077734 -76117698 + HAL1 LINE L1 2326 2470 -37 2 1508 580 253 12 8 chr1 121077826 121078018 -76117414 + MIR SINE MIR 12 214 -54 2 1508 543 128 0 0 chr1 121078095 121078181 -76117251 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1508 232 270 43 138 chr1 121078245 121078361 -76117071 - B4A SINE B4 -118 174 70 2 1508 278 286 105 63 chr1 121078712 121078902 -76116530 - ORR1E LTR MaLR -7 372 175 2 1508 1261 196 0 0 chr1 121078968 121079182 -76116250 - B3 SINE B2 0 216 3 2 1508 349 245 53 0 chr1 121079190 121079282 -76116150 + RMER30 DNA MER1_type 11 107 -95 2 1508 683 304 10 15 chr1 121079282 121079435 -76115997 + B3A SINE B2 1 152 -46 2 1508 609 128 0 0 chr1 121079435 121079537 -76115895 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1508 683 304 10 15 chr1 121079537 121079580 -76115852 + B3A SINE B2 153 196 -2 2 1508 387 322 83 7 chr1 121079594 121079738 -76115694 - Charlie12 DNA MER1_type -2717 156 2 2 1508 444 293 10 0 chr1 121079641 121079740 -76115692 + RMER30 DNA MER1_type 103 202 0 2 1508 414 209 44 0 chr1 121079741 121079832 -76115600 - ORR1E LTR MaLR -264 95 1 2 1508 834 232 98 10 chr1 121081031 121081236 -76114196 - ID_B1 SINE B4 0 224 2 2 1508 338 289 0 0 chr1 121081776 121081852 -76113580 + B4A SINE B4 6 81 -211 2 1508 279 0 0 0 chr1 121081853 121081884 -76113548 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1508 293 235 57 123 chr1 121081889 121082071 -76113361 + B4 SINE B4 138 292 0 2 1508 1173 77 0 0 chr1 121082076 121082363 -76113069 + (CA)n Simple_repeat Simple_repeat 1 287 0 2 1508 231 208 134 98 chr1 121082740 121082852 -76112580 - RLTR13D1 LTR ERVK -659 147 32 2 1508 366 23 0 0 chr1 121083032 121083075 -76112357 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1508 519 123 0 0 chr1 121083209 121083290 -76112142 + (CTA)n Simple_repeat Simple_repeat 2 82 0 2 1508 530 328 39 17 chr1 121083299 121083479 -76111953 - B4 SINE B4 -105 187 4 2 1508 519 17 0 0 chr1 121084282 121084342 -76111090 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1508 321 275 52 42 chr1 121084355 121084562 -76110870 - B4A SINE B4 -23 269 3 2 1508 964 309 36 43 chr1 121085612 121085893 -76109539 + B4A SINE B4 13 291 -1 2 1508 206 179 0 18 chr1 121085896 121085953 -76109479 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 1508 248 266 67 92 chr1 121086676 121086796 -76108636 + MIRm SINE MIR 79 195 -81 2 1508 636 238 211 0 chr1 121086846 121087031 -76108401 - ID_B1 SINE B4 0 224 1 2 1508 306 0 0 0 chr1 121088211 121088245 -76107187 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1508 246 32 0 0 chr1 121088245 121088275 -76107157 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1508 946 279 53 15 chr1 121088348 121088610 -76106822 - B4A SINE B4 -19 273 2 2 1508 348 148 0 0 chr1 121088627 121088688 -76106744 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1508 627 258 209 83 chr1 121088693 121088947 -76106485 - B4 SINE B4 -4 288 3 2 1508 557 330 43 9 chr1 121088968 121089200 -76106232 + Tigger5 DNA MER2_type 2157 2396 -10 2 1508 681 47 0 0 chr1 121089521 121089606 -76105826 + (TC)n Simple_repeat Simple_repeat 1 85 0 2 1508 670 314 20 112 chr1 121090073 121090378 -76105054 - B4A SINE B4 0 292 16 2 1508 214 268 40 66 chr1 121090311 121090387 -76105045 - B2_Mm2 SINE B2 -115 80 7 2 1508 648 301 11 5 chr1 121090457 121090641 -76104791 - ID_B1 SINE B4 -3 221 37 2 1508 238 261 142 42 chr1 121090800 121090920 -76104512 + MIRb SINE MIR 17 148 -120 2 1508 761 249 12 79 chr1 121090945 121091185 -76104247 - ID_B1 SINE B4 0 224 1 2 1508 1252 263 154 8 chr1 121092180 121092544 -76102888 + MTD LTR MaLR 3 419 0 2 1508 369 0 0 0 chr1 121093466 121093507 -76101925 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1508 305 224 0 38 chr1 121093509 121093588 -76101844 + MamRep434 DNA TcMar 101 176 -250 2 1508 737 238 82 10 chr1 121094414 121094622 -76100810 + ID_B1 SINE B4 2 224 0 2 1508 807 237 131 46 chr1 121094674 121095039 -76100393 + MTD LTR MaLR 5 404 -15 2 1508 769 217 201 9 chr1 121095231 121095450 -76099982 + B4A SINE B4 1 261 -31 2 1508 253 268 79 24 chr1 121095774 121095900 -76099532 + RLTR22_Mur LTR ERVK 1315 1447 -401 2 1508 958 266 38 38 chr1 121096614 121096876 -76098556 + B4 SINE B4 1 262 -30 2 1508 440 251 238 6 chr1 121096840 121097004 -76098428 - ORR1D1 LTR MaLR -43 331 130 2 1508 1210 41 7 0 chr1 121097186 121097331 -76098101 + B1_Mm SINE Alu 2 147 0 2 1508 708 182 8 0 chr1 121097347 121097468 -76097964 + ORR1D1 LTR MaLR 13 134 -240 2 1508 260 83 0 0 chr1 121097463 121097499 -76097933 + ORR1D1 LTR MaLR 339 374 0 2 1508 580 182 115 8 chr1 121098017 121098139 -76097293 + MLT1B LTR MaLR 15 149 -241 2 1508 742 286 147 12 chr1 121098150 121098401 -76097031 + B4 SINE B4 8 292 0 2 1508 616 330 17 30 chr1 121098466 121098697 -76096735 + B4A SINE B4 3 230 -62 2 1508 265 283 156 28 chr1 121098694 121098803 -76096629 + MLT1B LTR MaLR 341 463 -4 2 1508 276 30 0 0 chr1 121099519 121099552 -76095880 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 2 1508 1035 299 57 4 chr1 121099622 121099887 -76095545 + B4 SINE B4 12 290 -2 2 1508 351 0 0 0 chr1 121099902 121099941 -76095491 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1508 402 108 0 0 chr1 121099941 121100015 -76095417 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1508 200 307 33 58 chr1 121100036 121100157 -76095275 - L2b LINE L2 -54 3333 3216 2 1508 214 290 46 129 chr1 121100471 121100588 -76094844 - L2b LINE L2 -222 3153 3050 2 1508 1302 272 40 16 chr1 121100588 121100958 -76094474 - MTE2a LTR MaLR 0 379 1 2 1508 214 290 46 129 chr1 121100958 121101034 -76094398 - L2b LINE L2 -326 3049 2976 2 1508 266 254 29 29 chr1 121101220 121101289 -76094143 + MER20 DNA MER1_type 118 186 -33 2 1508 597 270 88 57 chr1 121101327 121101555 -76093877 - MTD LTR MaLR -182 237 3 2 1508 561 100 0 0 chr1 121102342 121102432 -76093000 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 1508 723 229 59 145 chr1 121102459 121102647 -76092785 - B4A SINE B4 -23 269 84 2 1508 912 227 64 5 chr1 121102647 121102851 -76092581 - B3 SINE B2 0 216 1 2 1508 702 229 59 145 chr1 121102851 121102917 -76092515 - B4 SINE B4 -196 96 37 2 1508 552 312 7 0 chr1 121103077 121103221 -76092211 + RSINE1 SINE B4 3 147 -18 2 1508 35 24 0 0 chr1 121103289 121103331 -76092101 + AT_rich Low_complexity Low_complexity 1 42 0 2 1508 593 319 34 61 chr1 121103631 121103855 -76091577 + MLT1C LTR MaLR 1 217 -250 2 1508 397 232 231 7 chr1 121103855 121103998 -76091434 + B4 SINE B4 1 175 -117 2 1508 272 276 131 126 chr1 121104022 121104221 -76091211 + MLT1C LTR MaLR 188 387 -80 2 1508 745 207 143 15 chr1 121104549 121104745 -76090687 + ID_B1 SINE B4 4 224 0 3 1508 36 0 0 0 chr1 121104745 121104781 -76090651 + AT_rich Low_complexity Low_complexity 1 36 0 3 1508 233 346 76 38 chr1 121104967 121105072 -76090360 + MLT1F1 LTR MaLR 175 283 -286 3 1508 253 288 144 66 chr1 121105421 121105678 -76089754 + L2b LINE L2 3034 3310 -65 3 1508 191 273 158 20 chr1 121106627 121106728 -76088704 + MIRm SINE MIR 52 166 -110 3 1508 266 194 0 16 chr1 121106805 121106868 -76088564 + CT-rich Low_complexity Low_complexity 4 65 0 3 1508 689 247 128 12 chr1 121106879 121107051 -76088381 - ID_B1 SINE B4 -32 192 1 3 1508 390 276 76 17 chr1 121107353 121107471 -76087961 + MER5A DNA MER1_type 4 128 -61 3 1508 832 280 44 65 chr1 121108418 121108712 -76086720 + B4A SINE B4 5 292 0 3 1508 935 201 120 0 chr1 121108777 121108961 -76086471 - B3 SINE B2 -10 206 1 3 1508 359 193 0 12 chr1 121108990 121109074 -76086358 + (CAT)n Simple_repeat Simple_repeat 1 83 0 3 1508 571 294 104 47 chr1 121109083 121109294 -76086138 - B4A SINE B4 -68 224 2 3 1508 203 292 39 59 chr1 121109904 121110006 -76085426 - MIR SINE MIR -92 116 17 3 1508 613 249 179 24 chr1 121110238 121110489 -76084943 - B4 SINE B4 0 292 3 3 1509 246 246 18 0 chr1 121111088 121111145 -76084287 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1509 1038 211 32 109 chr1 121111145 121111458 -76083974 - B4 SINE B4 0 292 4 3 1509 468 0 0 0 chr1 121111668 121111720 -76083712 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1509 230 310 89 57 chr1 121111743 121111866 -76083566 - MT2A LTR ERVL -208 325 199 3 1509 555 263 7 50 chr1 121111821 121111961 -76083471 + RSINE1 SINE B4 11 144 -21 3 1509 578 271 186 11 chr1 121112227 121112410 -76083022 + ID_B1 SINE B4 8 222 -2 3 1509 396 0 0 0 chr1 121112448 121112492 -76082940 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1509 1140 237 21 0 chr1 121112657 121112893 -76082539 + B4A SINE B4 1 241 -51 3 1509 386 39 19 0 chr1 121112929 121112981 -76082451 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1509 490 272 91 92 chr1 121113754 121113970 -76081462 + B3A SINE B2 1 215 -1 3 1509 848 309 120 8 chr1 121115147 121115405 -76080027 + B4 SINE B4 2 288 -4 3 1509 287 325 0 0 chr1 121115410 121115493 -76079939 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1509 426 322 78 45 chr1 121116066 121116245 -76079187 + B4A SINE B4 2 186 -106 3 1509 243 312 38 0 chr1 121116346 121116426 -76079006 + MER45R DNA Tip100 118 200 -1381 3 1509 894 266 75 4 chr1 121116434 121116702 -76078730 + MER45B DNA Tip100 308 594 -446 3 1509 430 328 76 54 chr1 121116786 121117102 -76078330 + MER45B DNA Tip100 713 1035 -5 3 1509 682 299 18 6 chr1 121117174 121117339 -76078093 + B4A SINE B4 25 191 -101 3 1509 246 125 0 0 chr1 121117547 121117595 -76077837 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1509 534 239 8 34 chr1 121117626 121117743 -76077689 - RSINE1 SINE B4 -49 116 3 3 1509 315 0 0 0 chr1 121118387 121118422 -76077010 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1509 1484 192 66 27 chr1 121118437 121118810 -76076622 - MT2A LTR ERVL -69 464 28 3 1509 440 319 34 68 chr1 121118848 121119053 -76076379 - B4 SINE B4 0 292 95 3 1509 1464 217 127 6 chr1 121119062 121119423 -76076009 - MTD LTR MaLR -14 405 1 3 1509 344 268 0 24 chr1 121119427 121119511 -76075921 - B4 SINE B4 -205 87 6 3 1509 643 209 186 0 chr1 121120342 121120471 -76074961 - B3A SINE B2 -45 153 1 3 1509 313 304 148 7 chr1 121120481 121120630 -76074802 + LTR16E1 LTR ERVL 335 504 -34 3 1509 422 268 84 99 chr1 121120768 121121041 -76074391 - B4A SINE B4 -19 273 5 3 1509 1142 230 142 81 chr1 121121538 121121884 -76073548 - MTE2b LTR MaLR -12 367 1 3 1509 686 259 138 24 chr1 121122094 121122347 -76073085 - B4 SINE B4 -10 282 1 3 1509 627 252 20 7 chr1 121122525 121122673 -76072759 - RSINE1 SINE B4 -13 152 3 3 1509 225 262 195 24 chr1 121123107 121123129 -76072303 + B1F2 SINE Alu 52 147 -2 3 1509 347 190 0 33 chr1 121123129 121123189 -76072243 + B4 SINE B4 166 223 -69 3 1509 194 0 39 0 chr1 121123192 121123218 -76072214 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1509 481 236 52 210 chr1 121123228 121123244 -76072188 + B4 SINE B4 81 115 -177 3 1509 632 230 58 29 chr1 121123244 121123383 -76072049 + B1_Mur1 SINE Alu 6 148 -1 3 1509 481 236 52 210 chr1 121123383 121123449 -76071983 + B4 SINE B4 116 272 -20 3 1509 387 0 0 0 chr1 121123449 121123492 -76071940 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1509 481 236 52 210 chr1 121123492 121123522 -76071910 + B4 SINE B4 273 292 0 3 1509 1028 220 28 9 chr1 121123892 121124103 -76071329 - ID_B1 SINE B4 -8 216 2 3 1509 746 307 53 47 chr1 121124242 121124528 -76070904 + MTE2a LTR MaLR 40 332 -47 3 1509 216 0 0 0 chr1 121124528 121124552 -76070880 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1509 746 307 53 47 chr1 121124552 121124603 -76070829 + MTE2a LTR MaLR 333 379 0 3 1509 414 0 0 0 chr1 121124994 121125040 -76070392 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1509 552 89 0 0 chr1 121125040 121125118 -76070314 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1509 762 254 97 0 chr1 121125124 121125309 -76070123 - B4 SINE B4 -89 203 1 3 1509 341 267 13 13 chr1 121125736 121125812 -76069620 + RSINE1 SINE B4 1 76 -89 3 1509 396 0 0 0 chr1 121125825 121125869 -76069563 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1509 188 330 148 0 chr1 121126196 121126284 -76069148 - MIR3 SINE MIR -4 204 104 3 1509 766 204 162 53 chr1 121127535 121127763 -76067669 + B4A SINE B4 40 292 0 3 1509 275 369 37 15 chr1 121127752 121127887 -76067545 - Charlie12 DNA MER1_type -2716 157 20 3 1509 216 238 15 45 chr1 121128070 121128136 -76067296 + MIRm SINE MIR 114 177 -99 3 1509 195 258 19 102 chr1 121128736 121128844 -76066588 + L2a LINE L2 3272 3370 -56 3 1509 765 190 14 7 chr1 121128908 121129051 -76066381 + B1_Mur1 SINE Alu 5 148 -1 3 1509 1438 200 138 0 chr1 121129112 121129437 -76065995 - ORR1D1 LTR MaLR 0 374 5 3 1509 1115 295 33 11 chr1 121129544 121129904 -76065528 + Lx8 LINE L1 6960 7327 -146 3 1509 207 0 0 0 chr1 121129920 121129943 -76065489 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1509 191 40 0 0 chr1 121130361 121130386 -76065046 - L2b LINE L2 -223 3152 3128 3 1509 690 305 69 13 chr1 121131476 121131736 -76063696 - RSINE1 SINE B4 0 292 10 3 1509 616 283 67 47 chr1 121131737 121131858 -76063574 - B4 SINE B4 -88 204 81 3 1509 243 0 0 0 chr1 121131858 121131885 -76063547 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1509 616 283 67 47 chr1 121131885 121131956 -76063476 - B4 SINE B4 -212 80 8 3 1509 297 343 81 23 chr1 121132150 121132323 -76063109 + MLT1H2 LTR MaLR 3 185 -304 3 1509 666 253 174 70 chr1 121132752 121133011 -76062421 + B4A SINE B4 7 292 0 3 1509 236 350 106 22 chr1 121133189 121133353 -76062079 + MIRc SINE MIR 88 262 -6 3 1509 222 37 0 0 chr1 121133954 121133981 -76061451 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1509 387 0 0 0 chr1 121133981 121134023 -76061409 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1509 386 322 136 18 chr1 121134032 121134253 -76061179 + MLT1C LTR MaLR 46 292 -175 3 1509 531 0 0 0 chr1 121134285 121134344 -76061088 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1509 496 248 79 74 chr1 121134378 121134573 -76060859 - B4 SINE B4 -1 291 97 3 1509 388 218 0 60 chr1 121134616 121134699 -76060733 - B4A SINE B4 -195 97 20 3 1509 1527 210 102 41 chr1 121135711 121136053 -76059379 - MTD LTR MaLR -5 414 52 3 1509 250 230 0 90 chr1 121136052 121136117 -76059315 + B4A SINE B4 37 95 -197 3 1509 724 229 49 0 chr1 121136117 121136261 -76059171 + B3A SINE B2 1 151 -47 3 1509 579 51 0 0 chr1 121136263 121136342 -76059090 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1509 799 263 17 20 chr1 121136385 121136581 -76058851 + B4A SINE B4 78 276 -16 3 1509 210 143 0 0 chr1 121136637 121136672 -76058760 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1509 852 130 0 0 chr1 121137018 121137156 -76058276 + (GGA)n Simple_repeat Simple_repeat 1 138 0 3 1509 1013 239 174 18 chr1 121137232 121137560 -76057872 + MTEa LTR MaLR 1 379 0 3 1509 428 335 92 0 chr1 121137602 121137766 -76057666 + Tigger5 DNA MER2_type 4 182 -2224 3 1509 229 253 81 81 chr1 121138022 121138108 -76057324 + Tigger5 DNA MER2_type 44 129 -2277 3 1509 273 369 16 39 chr1 121138214 121138341 -76057091 - B1_Mur2 SINE Alu -23 126 3 3 1509 765 264 22 11 chr1 121138341 121138426 -76057006 - B4 SINE B4 -204 88 2 3 1509 216 196 0 0 chr1 121138442 121138488 -76056944 + T-rich Low_complexity Low_complexity 1 46 0 3 1509 306 0 0 0 chr1 121138895 121138929 -76056503 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1509 990 144 7 20 chr1 121139389 121139538 -76055894 - B1_Mur3 SINE Alu 0 149 3 3 1509 313 85 0 0 chr1 121139547 121139594 -76055838 + MT2A LTR ERVL 482 528 -5 3 1509 490 230 111 0 chr1 121139596 121139722 -76055710 - RMER30 DNA MER1_type -55 147 8 3 1509 1281 232 94 32 chr1 121139872 121140153 -76055279 + MTE2b LTR MaLR 34 291 -88 3 1509 1154 254 97 100 chr1 121140153 121140771 -76054661 - RLTR18 LTR ERVK 0 616 1 3 1509 1281 225 98 7 chr1 121140771 121140849 -76054583 + MTE2b LTR MaLR 292 379 0 3 1509 231 327 111 37 chr1 121140879 121141041 -76054391 - L2b LINE L2 -79 3296 3123 3 1509 713 251 50 99 chr1 121141135 121141356 -76054076 - RLTR18 LTR ERVK -44 572 363 3 1509 213 325 24 49 chr1 121141629 121141752 -76053680 + MIRb SINE MIR 36 155 -113 3 1509 343 275 175 7 chr1 121141826 121141969 -76053463 + MLT1J LTR MaLR 87 253 -259 3 1509 789 281 44 136 chr1 121142001 121142413 -76053019 - MTE2a LTR MaLR 0 379 6 3 1509 405 0 0 0 chr1 121142413 121142458 -76052974 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1509 1673 199 68 9 chr1 121142601 121142940 -76052492 - ORR1D1 LTR MaLR 0 374 16 4 1509 232 297 68 0 chr1 121143892 121143966 -76051466 + L3 LINE CR1 2960 3038 -1451 4 1509 778 237 32 0 chr1 121144094 121144250 -76051182 + RSINE1 SINE B4 3 163 -2 4 1509 234 0 0 0 chr1 121144254 121144280 -76051152 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1509 966 241 76 25 chr1 121144481 121144721 -76050711 + B4A SINE B4 2 257 -35 4 1509 773 266 70 22 chr1 121144721 121144994 -76050438 + B4A SINE B4 1 286 -6 4 1509 966 241 76 25 chr1 121144994 121145030 -76050402 + B4A SINE B4 258 292 0 4 1509 291 216 18 9 chr1 121145030 121145142 -76050290 + (CA)n Simple_repeat Simple_repeat 1 113 0 4 1509 231 263 0 0 chr1 121145167 121145285 -76050147 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 1509 184 357 83 53 chr1 121145324 121145457 -76049975 + L3 LINE CR1 3244 3380 -1109 4 1509 286 363 138 9 chr1 121145515 121145740 -76049692 + L3 LINE CR1 3386 3639 -850 4 1509 582 286 19 7 chr1 121145837 121145992 -76049440 + ID_B1 SINE B4 3 159 -65 4 1509 2242 71 63 19 chr1 121146004 121146319 -76049113 - ORR1A4 LTR MaLR 0 329 1 4 1509 21 36 0 0 chr1 121146375 121146403 -76049029 + AT_rich Low_complexity Low_complexity 1 28 0 4 1509 729 235 76 162 chr1 121146408 121146569 -76048863 + B3A SINE B2 1 168 -30 4 1509 2119 120 9 47 chr1 121146569 121146711 -76048721 + ORR1A4 LTR MaLR 3 145 -184 4 1509 198 0 0 0 chr1 121146711 121146733 -76048699 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1509 1139 52 15 0 chr1 121146733 121146868 -76048564 - B1_Mur4 SINE Alu -9 141 5 4 1509 2119 120 9 47 chr1 121146868 121147064 -76048368 + ORR1A4 LTR MaLR 146 328 -1 4 1509 233 75 25 0 chr1 121147073 121147113 -76048319 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1509 340 235 76 162 chr1 121147113 121147139 -76048293 + B2_Mm2 SINE B2 160 180 -15 4 1509 215 309 144 0 chr1 121147514 121147611 -76047821 + B4A SINE B4 43 153 -139 4 1509 277 272 67 19 chr1 121147736 121147841 -76047591 - MIR SINE MIR -21 241 132 4 1509 616 223 0 0 chr1 121147995 121148116 -76047316 + RSINE1 SINE B4 2 122 -43 4 1509 294 277 116 81 chr1 121148116 121148168 -76047264 + B2_Mm1t SINE B2 1 179 -14 4 1509 824 283 36 58 chr1 121148181 121148455 -76046977 - MTE2b LTR MaLR -41 338 71 4 1509 1314 229 74 40 chr1 121148635 121149040 -76046392 + MTD LTR MaLR 1 419 0 4 1509 351 0 0 0 chr1 121149425 121149464 -76045968 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1509 468 252 27 169 chr1 121149477 121149625 -76045807 - RSINE1 SINE B4 -29 136 10 4 1509 280 64 0 41 chr1 121149641 121149690 -76045742 + (CCCCCA)n Simple_repeat Simple_repeat 2 48 0 4 1509 513 311 109 0 chr1 121149795 121149988 -76045444 + ID_B1 SINE B4 3 216 -8 4 1509 355 242 39 0 chr1 121150040 121150173 -76045259 + L1MC4a LINE L1 7774 7982 -13 4 1509 749 183 196 16 chr1 121150305 121150494 -76044938 + ID_B1 SINE B4 2 224 0 4 1509 485 350 6 48 chr1 121150494 121150659 -76044773 + RSINE1 SINE B4 5 162 -3 4 1509 270 0 0 0 chr1 121150984 121151014 -76044418 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1509 336 48 0 0 chr1 121151852 121151894 -76043538 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 4 1509 378 0 0 0 chr1 121151921 121151963 -76043469 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1509 278 336 26 0 chr1 121153595 121153708 -76041724 + MIRc SINE MIR 11 126 -142 4 1509 472 307 40 51 chr1 121154165 121154340 -76041092 + B4A SINE B4 7 179 -113 4 1509 216 97 0 0 chr1 121154361 121154392 -76041040 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1509 266 326 33 11 chr1 121154399 121154489 -76040943 + B4A SINE B4 183 274 -18 4 1509 420 20 0 0 chr1 121154501 121154550 -76040882 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1509 1186 281 62 0 chr1 121155084 121155437 -76039995 + MTE2b LTR MaLR 1 375 -4 4 1509 1014 229 103 52 chr1 121155528 121155592 -76039840 - B4A SINE B4 -2 290 226 4 1509 403 18 18 18 chr1 121155592 121155649 -76039783 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 1509 1014 229 103 52 chr1 121155649 121155856 -76039576 - B4A SINE B4 -67 225 7 4 1509 431 283 26 9 chr1 121155997 121156111 -76039321 - MIRb SINE MIR -125 143 28 4 1509 901 275 153 63 chr1 121156476 121156965 -76038467 + MT2A LTR ERVL 1 533 0 4 1509 1152 184 56 0 chr1 121157314 121157510 -76037922 + B3 SINE B2 3 209 -7 4 1509 855 280 85 22 chr1 121157707 121157977 -76037455 + B4 SINE B4 2 288 -4 4 1509 290 262 14 11 chr1 121158046 121158134 -76037298 + L1MC LINE L1 4683 4772 -1374 4 1509 444 251 188 45 chr1 121158184 121158490 -76036942 + MTEa LTR MaLR 1 379 0 4 1509 1765 130 52 101 chr1 121158518 121158886 -76036546 + ORR1B1 LTR MaLR 37 386 -8 4 1509 247 262 0 0 chr1 121158923 121158984 -76036448 + L1MD LINE L1 4901 4961 -1185 4 1509 903 248 191 40 chr1 121158996 121159320 -76036112 - MTEa LTR MaLR 0 379 7 4 1509 550 330 106 29 chr1 121159364 121159676 -76035756 - ORR1D2 LTR MaLR -13 357 22 4 1509 555 175 9 19 chr1 121159809 121159914 -76035518 + Lx8 LINE L1 7045 7148 -325 4 1509 271 262 61 41 chr1 121160069 121160216 -76035216 + L1MA6 LINE L1 6146 6295 -5 4 1509 268 167 0 100 chr1 121160559 121160619 -76034813 + MER117 DNA MER1_type 103 156 -41 4 1509 216 0 0 0 chr1 121161136 121161160 -76034272 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1509 210 290 155 28 chr1 121161265 121161336 -76034096 + B4 SINE B4 2 81 -211 4 1509 482 295 7 28 chr1 121161446 121161589 -76033843 + B4 SINE B4 84 223 -69 4 1509 207 0 0 0 chr1 121161733 121161756 -76033676 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1509 387 0 0 0 chr1 121161756 121161798 -76033634 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1509 804 260 78 5 chr1 121162836 121163041 -76032391 + ID_B1 SINE B4 1 220 -4 4 1509 524 261 14 34 chr1 121163585 121163732 -76031700 + MIRb SINE MIR 8 151 -117 4 1509 424 174 29 0 chr1 121164364 121164502 -76030930 + (CATA)n Simple_repeat Simple_repeat 3 144 0 4 1509 252 283 52 78 chr1 121165077 121165192 -76030240 - PB1D7 SINE Alu -2 118 7 4 1509 602 284 74 13 chr1 121165096 121165275 -76030157 - ID_B1 SINE B4 -114 178 1 4 1509 458 220 16 202 chr1 121165475 121165663 -76029769 + RMER15 LTR ERVL 2 154 -421 4 1509 1045 257 42 59 chr1 121165664 121165970 -76029462 + RMER15 LTR ERVL 275 575 0 4 1509 272 286 36 0 chr1 121166164 121166248 -76029184 - MIR SINE MIR -3 259 173 4 1509 645 246 160 16 chr1 121166582 121166776 -76028656 + ID_B1 SINE B4 1 222 -2 4 1509 1640 179 66 27 chr1 121166829 121167163 -76028269 - ORR1D2 LTR MaLR -4 366 20 4 1509 1208 279 0 17 chr1 121167325 121167613 -76027819 + B4A SINE B4 2 284 -8 4 1509 245 242 0 16 chr1 121167623 121167686 -76027746 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1509 420 256 159 14 chr1 121168970 121169189 -76026243 + MTEb LTR MaLR 70 379 0 4 1509 183 42 0 0 chr1 121169916 121169940 -76025492 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1509 525 285 83 38 chr1 121169956 121170113 -76025319 - RSINE1 SINE B4 0 165 2 4 1509 500 277 57 75 chr1 121170267 121170462 -76024970 + L1MD3 LINE L1 7606 7909 -86 4 1509 829 274 24 57 chr1 121170462 121170760 -76024672 + B4A SINE B4 1 288 -4 4 1509 500 277 57 75 chr1 121170760 121170845 -76024587 + L1MD3 LINE L1 7910 7985 -10 4 1509 350 165 209 12 chr1 121170921 121171007 -76024425 - RSINE1 SINE B4 -60 105 3 4 1509 291 286 164 16 chr1 121171469 121171597 -76023835 + MLT1C LTR MaLR 11 157 -310 4 1509 577 228 24 8 chr1 121171598 121171722 -76023710 + B3A SINE B2 1 126 -72 4 1509 1142 276 39 14 chr1 121171967 121172250 -76023182 + B4 SINE B4 3 292 0 4 1509 605 304 103 0 chr1 121172305 121172527 -76022905 + B4A SINE B4 2 290 -2 4 1509 216 0 0 0 chr1 121172567 121172591 -76022841 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1509 244 265 486 0 chr1 121173133 121173255 -76022177 + B3 SINE B2 31 211 -5 4 1509 365 164 14 0 chr1 121173266 121173339 -76022093 + GA-rich Low_complexity Low_complexity 6 79 0 4 1509 661 254 203 0 chr1 121173345 121173675 -76021757 + Lx9 LINE L1 7248 7644 0 4 1509 978 211 21 10 chr1 121173819 121173896 -76021536 + ID SINE ID 1 79 -145 4 1509 430 314 43 21 chr1 121173896 121174036 -76021396 + B1F1 SINE Alu 1 143 -6 4 1509 256 299 107 13 chr1 121174036 121174195 -76021237 + L1MC5 LINE L1 7526 7699 -262 4 1509 195 42 0 0 chr1 121174229 121174253 -76021179 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 4 1509 2019 212 33 8 chr1 121174258 121174648 -76020784 + MTD LTR MaLR 18 417 -2 4 1509 419 320 108 54 chr1 121174678 121174936 -76020496 + B4A SINE B4 3 274 -18 4 1509 396 0 0 0 chr1 121174966 121175010 -76020422 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1509 207 0 0 0 chr1 121175368 121175391 -76020041 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1509 261 57 0 0 chr1 121175686 121175721 -76019711 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1509 333 100 0 0 chr1 121175757 121175807 -76019625 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1509 257 217 143 0 chr1 121175908 121175972 -76019460 + B3A SINE B2 12 84 -111 4 1509 1335 266 49 12 chr1 121176329 121176675 -76018757 - ORR1E LTR MaLR 0 359 1 4 1509 463 303 19 58 chr1 121177129 121177283 -76018149 + B4 SINE B4 4 151 -141 4 1509 1302 7 0 0 chr1 121177287 121177434 -76017998 + (GGGAGA)n Simple_repeat Simple_repeat 2 148 0 4 1509 426 39 0 0 chr1 121177496 121177548 -76017884 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1509 414 0 0 0 chr1 121178682 121178728 -76016704 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1509 706 301 133 20 chr1 121178743 121178991 -76016441 - B4 SINE B4 -6 286 11 4 1509 252 246 33 0 chr1 121179451 121179512 -76015920 + MIR SINE MIR 81 143 -65 4 1509 230 321 80 50 chr1 121179540 121179740 -76015692 - MTEb LTR MaLR -15 364 159 4 1509 711 300 22 31 chr1 121179950 121180177 -76015255 + RMER15 LTR ERVL 338 562 -13 4 1509 813 232 88 0 chr1 121180640 121180821 -76014611 - B4 SINE B4 -69 223 27 5 1509 887 252 123 112 chr1 121181121 121181496 -76013936 - MTE2a LTR MaLR 0 379 1 5 1509 188 234 43 72 chr1 121181510 121181579 -76013853 - L2 LINE L2 -3127 292 226 5 1509 941 244 37 41 chr1 121181748 121181992 -76013440 + B4 SINE B4 2 244 -48 5 1509 249 131 32 16 chr1 121181996 121182058 -76013374 + GA-rich Low_complexity Low_complexity 4 66 0 5 1509 925 241 53 24 chr1 121182231 121182439 -76012993 - B4 SINE B4 -10 282 69 5 1509 1473 235 97 14 chr1 121183212 121183592 -76011840 + MTD LTR MaLR 5 406 -13 5 1509 718 281 24 6 chr1 121183658 121183941 -76011491 + L1MA4 LINE L1 5642 5902 -1571 5 1509 776 255 14 67 chr1 121184034 121184257 -76011175 - MTE2a LTR MaLR -38 341 131 5 1509 1245 253 65 76 chr1 121184260 121184787 -76010645 - MT2A LTR ERVL -12 521 1 5 1509 384 241 95 41 chr1 121184787 121184930 -76010502 - MTE2a LTR MaLR -266 153 3 5 1509 23 0 0 0 chr1 121185025 121185048 -76010384 + AT_rich Low_complexity Low_complexity 1 23 0 5 1509 808 289 33 9 chr1 121185851 121186064 -76009368 + ID_B1 SINE B4 5 222 -2 5 1509 323 136 0 17 chr1 121186071 121186131 -76009301 + GA-rich Low_complexity Low_complexity 2 60 0 5 1509 384 158 0 0 chr1 121187093 121187169 -76008263 + CT-rich Low_complexity Low_complexity 2 77 0 5 1509 369 0 0 0 chr1 121187169 121187210 -76008222 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1509 711 279 83 0 chr1 121187316 121187520 -76007912 + ID_B1 SINE B4 2 222 -2 5 1509 933 234 63 43 chr1 121187520 121187819 -76007613 - RCHARR1 DNA MER1_type -203 771 467 5 1509 856 241 42 11 chr1 121187813 121187835 -76007597 - B3A SINE B2 -2 196 171 5 1509 384 71 0 0 chr1 121187835 121187891 -76007541 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1509 856 241 42 11 chr1 121187891 121188057 -76007375 - B3A SINE B2 -28 170 2 5 1509 526 230 88 0 chr1 121188121 121188234 -76007198 + RSINE1 SINE B4 2 124 -41 5 1509 334 0 43 0 chr1 121188234 121188280 -76007152 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1509 654 162 0 79 chr1 121188368 121188495 -76006937 + PB1D9 SINE Alu 2 118 -2 5 1509 358 270 70 23 chr1 121188500 121188629 -76006803 - RCHARR1 DNA MER1_type -522 452 318 5 1509 942 248 36 45 chr1 121189300 121189524 -76005908 + B4 SINE B4 2 223 -69 5 1509 321 100 0 0 chr1 121189581 121189631 -76005801 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1509 1204 242 24 114 chr1 121189742 121190111 -76005321 + MTE2a LTR MaLR 1 336 -43 5 1509 543 302 22 6 chr1 121190128 121190308 -76005124 - B3A SINE B2 -15 183 1 5 1509 360 0 0 0 chr1 121191143 121191183 -76004249 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1509 245 224 13 107 chr1 121191186 121191261 -76004171 - RSINE1 SINE B4 -45 120 53 5 1509 205 226 71 0 chr1 121191343 121191414 -76004018 - MIR3 SINE MIR -53 155 84 5 1509 234 0 0 0 chr1 121191667 121191693 -76003739 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1509 768 336 39 4 chr1 121192289 121192549 -76002883 + B4A SINE B4 2 270 -22 5 1509 613 73 21 0 chr1 121192549 121192645 -76002787 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1509 627 256 108 23 chr1 121192667 121192843 -76002589 - B3A SINE B2 0 198 8 5 1509 430 142 29 58 chr1 121192853 121193025 -76002407 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 5 1509 601 315 42 47 chr1 121193524 121193737 -76001695 - B4 SINE B4 -41 251 40 5 1509 253 181 0 53 chr1 121193786 121193862 -76001570 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 5 1509 654 254 8 0 chr1 121193873 121194003 -76001429 - RSINE1 SINE B4 -32 133 3 5 1509 495 118 0 0 chr1 121194154 121194230 -76001202 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 5 1509 762 69 0 0 chr1 121194246 121194347 -76001085 + (GGGAA)n Simple_repeat Simple_repeat 2 102 0 5 1509 487 324 76 76 chr1 121195034 121195258 -76000174 + B4 SINE B4 67 290 -2 5 1509 387 0 0 0 chr1 121195294 121195337 -76000095 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1509 229 277 138 0 chr1 121195487 121195581 -75999851 - MLT1D LTR MaLR -309 196 90 5 1509 847 306 5 0 chr1 121195585 121195794 -75999638 - ID_B1 SINE B4 -13 211 2 5 1509 697 246 0 105 chr1 121196210 121196401 -75999031 - B4 SINE B4 -121 171 1 5 1509 1353 75 42 16 chr1 121197350 121197540 -75997892 + B2_Mm2 SINE B2 1 195 0 5 1509 736 237 98 58 chr1 121197811 121198032 -75997400 + B4A SINE B4 1 230 -62 5 1509 607 247 93 0 chr1 121198032 121198182 -75997250 + RSINE1 SINE B4 2 165 0 5 1509 231 290 0 14 chr1 121198230 121198300 -75997132 + B4A SINE B4 219 287 -5 5 1509 722 241 31 6 chr1 121198681 121198761 -75996671 + ID SINE ID 1 84 -140 5 1509 343 333 0 10 chr1 121198761 121198858 -75996574 + PB1D10 SINE Alu 4 99 -18 5 1509 2353 93 15 6 chr1 121199449 121199773 -75995659 + ORR1A2 LTR MaLR 1 327 0 5 1509 531 294 0 0 chr1 121199854 121199973 -75995459 + ID_B1 SINE B4 1 119 -105 5 1509 245 222 129 47 chr1 121200080 121200165 -75995267 + MT2B LTR ERVL 167 258 -343 5 1509 551 187 33 0 chr1 121200105 121200196 -75995236 + B1F2 SINE Alu 43 136 -13 5 1509 243 0 0 0 chr1 121200323 121200350 -75995082 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1509 273 29 0 0 chr1 121200350 121200383 -75995049 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1509 534 49 24 12 chr1 121200384 121200467 -75994965 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1509 285 234 271 0 chr1 121200467 121200574 -75994858 - RSINE1 SINE B4 -28 137 2 5 1509 186 43 0 0 chr1 121200712 121200735 -75994697 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1509 512 299 198 0 chr1 121201646 121201833 -75993599 - ID_B1 SINE B4 0 224 1 5 1509 292 287 56 38 chr1 121201833 121201982 -75993450 - MIRc SINE MIR -98 164 15 5 1509 200 315 56 0 chr1 121202884 121202973 -75992459 + MIR SINE MIR 42 135 -73 5 1509 384 254 132 26 chr1 121202997 121203222 -75992210 + B4A SINE B4 1 247 -45 5 1509 258 250 57 86 chr1 121203759 121203864 -75991568 + RMER15 LTR ERVL 57 158 -417 5 1509 502 294 150 58 chr1 121203866 121204126 -75991306 + RMER15 LTR ERVL 277 560 -15 5 1509 448 107 160 0 chr1 121204127 121204202 -75991230 - ORR1B2 LTR MaLR -1 393 307 5 1509 503 214 39 0 chr1 121204194 121204297 -75991135 - ORR1B2 LTR MaLR -260 107 1 5 1509 624 331 6 0 chr1 121204565 121204722 -75990710 - RSINE1 SINE B4 -6 159 2 5 1509 303 93 0 0 chr1 121204727 121204770 -75990662 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1509 714 269 0 0 chr1 121204771 121204916 -75990516 - RSINE1 SINE B4 -20 145 1 5 1509 220 274 0 19 chr1 121204917 121204969 -75990463 - B4A SINE B4 -226 66 16 5 1509 184 294 138 31 chr1 121205175 121205305 -75990127 + L3 LINE CR1 4289 4432 -57 5 1509 221 314 191 0 chr1 121206183 121206288 -75989144 + MIR SINE MIR 15 139 -123 5 1509 258 210 63 16 chr1 121206810 121206873 -75988559 + MLT1D LTR MaLR 393 458 -47 5 1509 268 318 36 0 chr1 121206876 121206986 -75988446 + GA-rich Low_complexity Low_complexity 2 115 0 5 1509 420 20 0 0 chr1 121206987 121207036 -75988396 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 5 1509 754 266 127 58 chr1 121207044 121207383 -75988049 - L1MDa LINE L1 -3466 3071 2710 5 1509 409 218 0 13 chr1 121207383 121207462 -75987970 - ID4_ SINE ID -4 79 2 5 1509 916 249 136 43 chr1 121207462 121208174 -75987258 - L1MDa LINE L1 -3828 2709 1927 5 1509 228 310 35 0 chr1 121208199 121208216 -75987216 + (TG)n Simple_repeat Simple_repeat 2 18 0 5 1509 979 223 5 14 chr1 121208216 121208430 -75987002 + B3 SINE B2 5 216 0 5 1509 1305 163 12 0 chr1 121208430 121208707 -75986725 + (TG)n Simple_repeat Simple_repeat 1 280 0 5 1509 874 258 91 15 chr1 121208715 121208979 -75986453 - B4A SINE B4 -8 284 1 5 1509 669 279 69 28 chr1 121208980 121209227 -75986205 - L1MDa LINE L1 -4702 1931 1675 5 1509 665 320 58 4 chr1 121209250 121209476 -75985956 - MLT1A LTR MaLR 0 374 137 5 1509 632 224 116 17 chr1 121209481 121209654 -75985778 + B3A SINE B2 9 198 0 5 1509 426 253 23 171 chr1 121209668 121209844 -75985588 - MLT1A LTR MaLR -224 150 1 5 1509 382 130 103 77 chr1 121210051 121210168 -75985264 - Lx6 LINE L1 0 7460 7341 5 1509 1066 183 22 9 chr1 121210163 121210395 -75985037 - Lx7 LINE L1 -569 7127 6893 5 1509 310 272 164 29 chr1 121210446 121210586 -75984846 - B4A SINE B4 -132 160 2 5 1509 290 254 37 0 chr1 121210598 121210683 -75984749 - L1MDa LINE L1 -5055 1578 1479 5 1509 347 179 35 35 chr1 121210698 121210814 -75984618 + (GTTTG)n Simple_repeat Simple_repeat 4 119 0 5 1509 434 33 17 0 chr1 121210815 121210875 -75984557 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 5 1509 356 252 117 40 chr1 121210895 121210981 -75984451 - L1MDa LINE L1 -5205 1428 1344 5 1509 248 53 26 0 chr1 121210981 121211019 -75984413 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1509 356 252 117 40 chr1 121211019 121211155 -75984277 - L1MDa LINE L1 -5290 1343 1190 5 1509 562 331 61 34 chr1 121211155 121211452 -75983980 - L1MDa LINE L1 -5647 986 682 5 1509 825 291 38 0 chr1 121211512 121211722 -75983710 + ID_B1 SINE B4 2 219 -5 5 1509 261 336 107 43 chr1 121211809 121211955 -75983477 - L1MDa LINE L1 -6282 351 217 5 1509 393 22 0 0 chr1 121211955 121212001 -75983431 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1509 261 336 107 43 chr1 121212001 121212153 -75983279 - L1MDa LINE L1 -6417 216 36 5 1509 1047 220 117 8 chr1 121212201 121212448 -75982984 - B4A SINE B4 -18 274 1 5 1509 803 327 103 19 chr1 121212582 121213140 -75982292 - L1MC4a LINE L1 -1288 6754 6133 5 1509 1289 231 98 23 chr1 121213153 121213499 -75981933 - MTE2a LTR MaLR 0 379 8 5 1509 258 32 0 0 chr1 121213591 121213622 -75981810 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1509 602 245 13 70 chr1 121213627 121213785 -75981647 - RSINE1 SINE B4 -14 151 3 5 1509 303 240 91 53 chr1 121213786 121213918 -75981514 - L1MD LINE L1 -413 5829 5693 5 1509 680 241 148 39 chr1 121213922 121214125 -75981307 + B4A SINE B4 2 226 -66 5 1509 608 228 0 58 chr1 121214131 121214252 -75981180 + RSINE1 SINE B4 11 124 -41 5 1509 417 20 0 0 chr1 121214283 121214333 -75981099 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 5 1509 2332 109 0 55 chr1 121214374 121214722 -75980710 - ORR1A4 LTR MaLR 0 329 1 5 1509 6310 170 51 41 chr1 121214722 121215821 -75979611 - ORR1A4-int LTR MaLR 0 1963 625 5 1509 1350 141 98 69 chr1 121215821 121216095 -75979337 - MT2B LTR ERVL -314 287 6 5 1509 6310 170 51 41 chr1 121216095 121216120 -75979312 - ORR1A4-int LTR MaLR 0 624 593 5 1509 687 325 132 0 chr1 121216444 121216761 -75978671 - Lx8 LINE L1 -201 7272 6914 6 1509 185 321 0 0 chr1 121217021 121217077 -75978355 - L2b LINE L2 -224 3151 3096 6 1509 426 257 58 31 chr1 121217304 121217474 -75977958 + B4 SINE B4 121 289 -3 6 1509 599 249 30 41 chr1 121218597 121218794 -75976638 - MLT1F LTR MaLR -8 540 346 6 1509 729 175 31 31 chr1 121219745 121219875 -75975557 + B1F2 SINE Alu 2 131 -18 6 1509 615 280 73 69 chr1 121219928 121220216 -75975216 + B4A SINE B4 2 290 -2 6 1509 209 194 0 0 chr1 121220235 121220271 -75975161 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1509 971 264 9 0 chr1 121220749 121220961 -75974471 - ID_B1 SINE B4 -9 215 2 6 1509 396 0 0 0 chr1 121222054 121222098 -75973334 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1509 441 0 0 0 chr1 121222103 121222152 -75973280 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1509 485 307 0 34 chr1 121222182 121222300 -75973132 - RSINE1 SINE B4 -49 116 3 6 1509 755 257 69 9 chr1 121222301 121222517 -75972915 - B4A SINE B4 -62 230 2 6 1509 318 326 36 7 chr1 121222644 121222783 -75972649 - L1M5 LINE L1 -336 5788 5646 6 1509 216 67 0 0 chr1 121224308 121224338 -75971094 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1509 435 281 82 51 chr1 121224429 121224624 -75970808 - B4A SINE B4 -86 206 6 6 1509 348 127 0 0 chr1 121224795 121224850 -75970582 - HAL1-3A_ME LINE L1 -829 2029 1975 6 1509 293 190 10 29 chr1 121224885 121224988 -75970444 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 6 1509 295 105 35 0 chr1 121224991 121225048 -75970384 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1509 1017 229 23 58 chr1 121225095 121225354 -75970078 - B4 SINE B4 -42 250 1 6 1509 600 111 0 0 chr1 121226152 121226242 -75969190 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 1509 383 197 40 0 chr1 121227070 121227146 -75968286 - ID_B1 SINE B4 -2 222 144 6 1509 416 275 147 7 chr1 121227226 121227369 -75968063 - B4A SINE B4 -1 291 129 6 1509 247 324 67 0 chr1 121227382 121227487 -75967945 - 7SLRNA srpRNA srpRNA -200 114 3 6 1509 465 263 59 15 chr1 121227415 121227550 -75967882 - ID_B1 SINE B4 -67 157 17 6 1509 506 292 25 0 chr1 121227784 121227904 -75967528 + MER94 DNA AcHobo 12 134 0 6 1509 305 294 98 68 chr1 121228048 121228314 -75967118 - B4 SINE B4 -17 275 2 6 1509 668 223 0 28 chr1 121228824 121228967 -75966465 + B1_Mur2 SINE Alu 2 140 -9 6 1509 336 322 0 84 chr1 121228967 121228980 -75966452 + ID_B1 SINE B4 131 224 0 6 1509 482 79 0 13 chr1 121228980 121229057 -75966375 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 6 1509 191 36 36 0 chr1 121229211 121229239 -75966193 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1509 1153 43 0 0 chr1 121229239 121229377 -75966055 - B1_Mm SINE Alu -9 138 1 6 1509 600 239 7 76 chr1 121229814 121229959 -75965473 + RSINE1 SINE B4 2 136 -29 6 1509 268 260 55 0 chr1 121230094 121230167 -75965265 + HAL1 LINE L1 1677 1753 -754 6 1509 323 276 144 111 chr1 121230435 121230643 -75964789 + B4 SINE B4 78 292 0 6 1509 230 233 0 0 chr1 121230643 121230686 -75964746 + (CACG)n Simple_repeat Simple_repeat 1 43 0 6 1509 306 270 90 0 chr1 121230801 121230890 -75964542 - PB1D10 SINE Alu -12 105 9 6 1509 305 278 43 43 chr1 121230920 121231014 -75964418 - RSINE1 SINE B4 -65 100 7 6 1509 518 241 94 8 chr1 121231226 121231343 -75964089 - RSINE1 SINE B4 -36 129 3 6 1509 8333 173 91 44 chr1 121231383 121233687 -75961745 - Lx7 LINE L1 -2 7694 5253 6 1509 2554 258 168 40 chr1 121233689 121234240 -75961192 - RMER1C Other Other -5 1337 680 6 1509 2262 153 67 22 chr1 121234240 121234641 -75960791 - MTC LTR MaLR -2 419 1 6 1509 2554 268 140 35 chr1 121234641 121235018 -75960414 - RMER1C Other Other -491 851 364 6 1509 1156 199 4 0 chr1 121235033 121235264 -75960168 - L1_Mur3 LINE L1 -630 5250 5019 6 1509 6559 162 69 29 chr1 121235263 121235300 -75960132 - L1_Mur3 LINE L1 -1206 4674 4630 6 1509 357 43 0 0 chr1 121235300 121235347 -75960085 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1509 6559 162 69 29 chr1 121235347 121236427 -75959005 - L1_Mur3 LINE L1 -1251 4629 3486 6 1509 513 0 0 0 chr1 121236427 121236484 -75958948 + (TGG)n Simple_repeat Simple_repeat 2 58 0 6 1509 6559 162 69 29 chr1 121236484 121236741 -75958691 - L1_Mur3 LINE L1 -2395 3485 3246 6 1509 786 149 0 0 chr1 121236765 121236899 -75958533 + (TTTC)n Simple_repeat Simple_repeat 1 134 0 6 1509 6831 172 39 16 chr1 121236903 121238294 -75957138 - L1_Mur3 LINE L1 -3157 2723 1301 6 1509 1687 245 28 24 chr1 121238289 121238753 -75956679 - L1_Mur3 LINE L1 -6676 1052 587 6 1509 1850 193 73 78 chr1 121238808 121239318 -75956114 + RLTR20B3 LTR ERVK 16 564 -13 6 1509 817 196 7 7 chr1 121239379 121239523 -75955909 + B1_Mus2 SINE Alu 3 146 -1 6 1509 265 219 24 24 chr1 121239794 121239878 -75955554 + HAL1 LINE L1 1994 2077 -430 6 1509 277 260 76 163 chr1 121239962 121240003 -75955429 + MT2B LTR ERVL 96 139 -462 6 1509 234 0 0 0 chr1 121240003 121240029 -75955403 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 1509 277 260 76 163 chr1 121240029 121240171 -75955261 + MT2B LTR ERVL 140 263 -338 6 1509 633 205 36 0 chr1 121240084 121240196 -75955236 + B1_Mur1 SINE Alu 19 134 -15 6 1509 531 0 0 0 chr1 121240310 121240369 -75955063 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1509 843 263 8 59 chr1 121240892 121241130 -75954302 + B4A SINE B4 8 233 -59 6 1509 654 268 94 55 chr1 121241138 121241339 -75954093 + B3A SINE B2 7 215 -1 6 1509 180 111 0 0 chr1 121241380 121241407 -75954025 + (CATA)n Simple_repeat Simple_repeat 2 28 0 6 1509 493 237 116 22 chr1 121241411 121241549 -75953883 - B3 SINE B2 -65 151 1 6 1509 267 54 0 0 chr1 121241550 121241587 -75953845 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 6 188 231 169 169 0 chr1 121241588 121241647 -75953785 + B4 SINE B4 224 292 0 6 1510 533 235 138 87 chr1 121241790 121242065 -75953367 - B4A SINE B4 0 292 4 6 1510 552 77 0 0 chr1 121242521 121242599 -75952833 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1510 583 292 34 0 chr1 121242611 121242758 -75952674 - B4A SINE B4 -11 281 130 6 1510 24 0 0 0 chr1 121242758 121242782 -75952650 + GC_rich Low_complexity Low_complexity 1 24 0 6 1510 443 268 89 8 chr1 121243018 121243142 -75952290 - RSINE1 SINE B4 -30 135 2 6 1510 223 265 77 19 chr1 121243685 121243789 -75951643 - MIRm SINE MIR -91 177 68 6 1510 757 266 46 0 chr1 121244157 121244330 -75951102 + ID_B1 SINE B4 5 185 -39 6 1510 202 231 215 0 chr1 121244653 121244718 -75950714 - MIRc SINE MIR -101 167 89 6 1510 396 0 0 0 chr1 121244793 121244837 -75950595 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1510 381 300 102 45 chr1 121245829 121245986 -75949446 - B4A SINE B4 -1 291 126 6 1510 1617 210 61 28 chr1 121246263 121246625 -75948807 - MTEa LTR MaLR 0 379 6 6 1510 258 290 43 0 chr1 121246752 121246821 -75948611 + B1F2 SINE Alu 24 95 -54 6 1510 323 311 9 88 chr1 121247222 121247335 -75948097 + B4 SINE B4 2 105 -187 6 1510 23 0 0 0 chr1 121247349 121247372 -75948060 + AT_rich Low_complexity Low_complexity 1 23 0 6 1510 315 0 0 0 chr1 121247420 121247455 -75947977 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 6 1510 597 206 35 7 chr1 121247506 121247648 -75947784 - B3A SINE B2 -49 149 4 6 1510 256 220 154 91 chr1 121247669 121247779 -75947653 + B4 SINE B4 175 291 -1 6 1510 410 226 131 9 chr1 121247861 121247968 -75947464 + RSINE1 SINE B4 2 121 -44 6 1510 550 280 153 15 chr1 121249035 121249238 -75946194 - RMER15 LTR ERVL -70 505 275 6 1510 340 277 21 21 chr1 121249235 121249331 -75946101 - RMER15 LTR ERVL -414 161 66 6 1510 526 305 35 0 chr1 121249449 121249590 -75945842 - RSINE1 SINE B4 -16 149 4 6 1510 235 298 125 55 chr1 121249936 121250064 -75945368 - MLT1H LTR MaLR -311 238 102 6 1510 264 149 0 0 chr1 121250064 121250111 -75945321 + (CAT)n Simple_repeat Simple_repeat 2 48 0 6 1510 541 255 110 37 chr1 121250256 121250419 -75945013 - B4A SINE B4 -117 175 1 6 1510 219 114 0 0 chr1 121250489 121250524 -75944908 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1510 327 306 43 36 chr1 121250574 121250590 -75944842 - ID_B1 SINE B4 -83 141 126 6 1510 441 0 0 0 chr1 121250590 121250639 -75944793 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1510 327 306 43 36 chr1 121250639 121250761 -75944671 - ID_B1 SINE B4 -99 125 3 6 1510 433 324 14 56 chr1 121250868 121251117 -75944315 + MTD LTR MaLR 1 219 -200 6 1510 505 201 32 0 chr1 121251147 121251251 -75944181 - B1_Mur1 SINE Alu 0 149 43 6 1510 459 270 36 9 chr1 121251398 121251510 -75943922 + B3 SINE B2 68 182 -34 6 1510 688 218 101 53 chr1 121251672 121251861 -75943571 + B3A SINE B2 1 198 0 6 1510 326 212 50 0 chr1 121252446 121252526 -75942906 + MIR SINE MIR 61 144 -64 6 1510 955 261 4 13 chr1 121252563 121252788 -75942644 + ID_B1 SINE B4 2 224 0 6 1510 760 232 19 67 chr1 121252801 121253009 -75942423 + B3A SINE B2 1 198 0 6 1510 2535 78 9 0 chr1 121253134 121253456 -75941976 - ORR1A2 LTR MaLR 0 327 3 6 1510 1672 234 48 30 chr1 121253463 121253502 -75941930 - ORR1D1 LTR MaLR 0 419 380 6 1510 180 0 0 0 chr1 121253502 121253522 -75941910 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1510 1672 234 48 30 chr1 121253522 121253882 -75941550 - ORR1D1 LTR MaLR -40 379 13 6 1510 913 159 27 6 chr1 121253906 121254089 -75941343 - ORR1D1-int LTR MaLR -3 1255 1069 6 1510 981 237 24 9 chr1 121254090 121254303 -75941129 + B3 SINE B2 1 216 0 6 1510 489 238 17 11 chr1 121254304 121254478 -75940954 + (CATA)n Simple_repeat Simple_repeat 1 175 0 6 1510 2861 219 78 64 chr1 121254516 121255282 -75940150 - ORR1D1-int LTR MaLR -188 1070 294 6 1510 3147 116 95 2 chr1 121255257 121255751 -75939681 - RMER4B LTR ERVK -15 570 31 6 1510 8961 40 0 2 chr1 121255751 121257538 -75937894 - L1Md_F2 LINE L1 -14 6568 4785 6 1510 258 114 0 43 chr1 121257538 121257584 -75937848 - RMER4B LTR ERVK -540 45 2 6 1510 1180 214 86 83 chr1 121257585 121257922 -75937510 - ORR1D1-int LTR MaLR -920 338 1 6 1510 276 30 0 0 chr1 121257966 121257999 -75937433 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1510 2125 169 36 3 chr1 121258009 121258370 -75937062 - ORR1D1 LTR MaLR -1 373 1 6 1510 405 161 0 0 chr1 121258493 121258580 -75936852 + (TCTG)n Simple_repeat Simple_repeat 4 90 0 6 1510 323 322 88 28 chr1 121258594 121258776 -75936656 - MIRb SINE MIR -52 216 24 6 1510 409 293 22 33 chr1 121258819 121258999 -75936433 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 6 1510 274 277 12 24 chr1 121258938 121259013 -75936419 + (TGAG)n Simple_repeat Simple_repeat 1 76 0 6 1510 2051 144 61 53 chr1 121259013 121259388 -75936044 - ORR1C1 LTR MaLR 0 378 1 7 1510 274 277 12 24 chr1 121259388 121259397 -75936035 + (TGAG)n Simple_repeat Simple_repeat 1 8 0 7 1510 378 143 0 0 chr1 121259466 121259529 -75935903 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 7 1510 2048 165 56 6 chr1 121260608 121260968 -75934464 - ORR1C1 LTR MaLR 0 378 1 7 1510 718 289 25 29 chr1 121261382 121261663 -75933769 + B4A SINE B4 2 281 -11 7 1510 279 210 107 21 chr1 121261753 121261841 -75933591 + MLT1H1 LTR MaLR 409 510 -45 7 1510 645 84 65 6 chr1 121261842 121262010 -75933422 + (TG)n Simple_repeat Simple_repeat 2 179 0 7 1510 198 0 0 0 chr1 121262088 121262110 -75933322 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 7 1510 855 176 0 0 chr1 121262117 121262259 -75933173 - B1_Mur1 SINE Alu -7 142 1 7 1510 1069 220 36 5 chr1 121262259 121262481 -75932951 - B4A SINE B4 -63 229 1 7 1510 240 289 0 0 chr1 121262481 121262533 -75932899 + MLT1H1 LTR MaLR 503 554 -1 7 1510 291 279 19 0 chr1 121262538 121262642 -75932790 + L1M5 LINE L1 5650 5755 -418 7 1510 574 250 106 58 chr1 121262997 121263205 -75932227 + B4A SINE B4 1 218 -74 7 1510 900 276 39 35 chr1 121263217 121263499 -75931933 + B4 SINE B4 2 284 -8 7 1510 218 81 27 0 chr1 121263608 121263645 -75931787 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1510 265 159 32 0 chr1 121263794 121263857 -75931575 + GA-rich Low_complexity Low_complexity 1 65 0 7 1510 492 18 0 0 chr1 121263858 121263915 -75931517 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 7 1510 460 312 68 37 chr1 121264109 121264478 -75930954 - L1M5 LINE L1 -531 5663 5289 7 1510 593 228 21 90 chr1 121264592 121264622 -75930810 - B2_Mm2 SINE B2 -20 175 149 7 1510 438 20 0 0 chr1 121264622 121264673 -75930759 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1510 872 187 1 3 chr1 121264673 121264830 -75930602 - B3A SINE B2 -47 151 1 7 1510 219 240 0 0 chr1 121264923 121264973 -75930459 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1510 756 245 6 66 chr1 121265062 121265228 -75930204 - B3 SINE B2 -20 196 41 7 1510 1002 41 0 0 chr1 121265230 121265353 -75930079 + (CCCTAG)n Simple_repeat Simple_repeat 2 124 0 7 1510 300 251 309 32 chr1 121265353 121265545 -75929887 - B4A SINE B4 -47 245 1 7 1510 316 218 0 0 chr1 121265557 121265612 -75929820 - B4 SINE B4 -207 85 31 7 1510 532 281 14 28 chr1 121265645 121265788 -75929644 - B1F SINE Alu -8 141 1 7 1510 812 258 60 10 chr1 121265853 121266053 -75929379 + ID_B1 SINE B4 15 224 0 7 1510 1163 43 0 21 chr1 121266054 121266197 -75929235 + B1_Mus2 SINE Alu 1 140 -7 7 1510 297 0 0 0 chr1 121266201 121266234 -75929198 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 1510 212 86 29 0 chr1 121267086 121267121 -75928311 + (GGAGA)n Simple_repeat Simple_repeat 1 36 0 7 1510 2910 220 42 11 chr1 121267477 121268143 -75927289 - Lx2B LINE L1 -18 6982 6296 7 1510 303 226 0 0 chr1 121268161 121268223 -75927209 - B4A SINE B4 -230 62 1 7 1510 340 182 0 0 chr1 121268235 121268290 -75927142 - B4 SINE B4 -207 85 31 7 1510 3970 164 22 3 chr1 121268351 121269028 -75926404 - Lx4B LINE L1 -771 6287 5598 7 1510 2661 162 15 19 chr1 121269017 121269173 -75926259 + L1_Mur2 LINE L1 4657 4815 -1062 7 1510 306 0 0 0 chr1 121269173 121269207 -75926225 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1510 1141 65 0 0 chr1 121269207 121269345 -75926087 - B1_Mus2 SINE Alu -9 138 1 7 1510 2661 162 15 19 chr1 121269345 121269665 -75925767 + L1_Mur2 LINE L1 4816 5131 -746 7 1510 241 232 39 104 chr1 121269665 121269742 -75925690 - MTC LTR MaLR -128 291 220 7 1510 423 0 0 0 chr1 121269752 121269799 -75925633 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1510 1253 213 80 29 chr1 121270049 121270325 -75925107 + B4A SINE B4 3 292 0 7 1510 231 318 0 0 chr1 121270333 121270396 -75925036 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1510 382 325 57 25 chr1 121270603 121270761 -75924671 + RSINE1 SINE B4 3 165 0 7 1510 369 0 0 0 chr1 121270820 121270861 -75924571 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1510 477 198 394 19 chr1 121270917 121271077 -75924355 - ID_B1 SINE B4 0 224 5 7 1510 306 342 25 37 chr1 121271179 121271340 -75924092 - L1M4 LINE L1 -3212 2934 2776 7 1510 261 139 0 0 chr1 121271730 121271773 -75923659 + (TCC)n Simple_repeat Simple_repeat 1 43 0 7 1510 440 286 37 22 chr1 121271773 121271909 -75923523 - ID_B1 SINE B4 -84 140 3 7 1510 195 235 0 0 chr1 121272427 121272478 -75922954 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1510 22 35 0 0 chr1 121272619 121272648 -75922784 + AT_rich Low_complexity Low_complexity 1 29 0 7 1510 296 274 0 89 chr1 121272752 121272764 -75922668 - ID_B1 SINE B4 0 224 123 7 1510 541 200 20 0 chr1 121272764 121272864 -75922568 - B1_Mur2 SINE Alu -6 143 42 7 1510 452 239 35 35 chr1 121272881 121272905 -75922527 - L1M2 LINE L1 -482 5818 5799 7 1510 1683 138 89 78 chr1 121272905 121273275 -75922157 - ORR1D1 LTR MaLR 0 374 1 7 1510 452 239 35 35 chr1 121273275 121273393 -75922039 - L1M2 LINE L1 -502 5798 5676 7 1510 220 228 0 118 chr1 121273413 121273505 -75921927 - PB1D7 SINE Alu 0 120 41 7 1510 453 310 64 6 chr1 121273546 121273702 -75921730 + B4A SINE B4 2 166 -126 7 1510 520 207 0 87 chr1 121273890 121274017 -75921415 + MTEa LTR MaLR 32 147 -232 7 1510 461 261 0 83 chr1 121274094 121274215 -75921217 + PB1D10 SINE Alu 1 111 -6 7 1510 1027 212 9 14 chr1 121274235 121274445 -75920987 + B3 SINE B2 2 210 -6 7 1510 281 118 20 0 chr1 121274471 121274522 -75920910 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 7 1510 528 169 11 53 chr1 121274539 121274633 -75920799 + B1_Mur2 SINE Alu 44 133 -16 7 1510 278 244 159 97 chr1 121274633 121274684 -75920748 + RLTR25B LTR ERVK 445 598 -430 7 1510 382 262 27 36 chr1 121276140 121276251 -75919181 + ID_B1 SINE B4 45 154 -70 7 1510 307 237 53 0 chr1 121276356 121276432 -75919000 + ID_B1 SINE B4 143 222 -2 7 1510 231 61 0 0 chr1 121277052 121277085 -75918347 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 7 1510 1404 274 38 30 chr1 121277515 121277887 -75917545 - MTE2b LTR MaLR 0 379 5 7 1510 706 240 13 13 chr1 121278144 121278300 -75917132 + B3A SINE B2 7 162 -36 7 1510 309 26 0 0 chr1 121278301 121278339 -75917093 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1510 308 275 133 0 chr1 121278396 121278516 -75916916 + B4A SINE B4 91 226 -66 7 1510 466 309 16 0 chr1 121278514 121278637 -75916795 + RSINE1 SINE B4 12 136 -29 7 1510 315 258 9 9 chr1 121278725 121278953 -75916479 + (CATATA)n Simple_repeat Simple_repeat 1 228 0 7 1510 486 248 9 0 chr1 121279079 121279184 -75916248 - RSINE1 SINE B4 -57 108 3 7 1510 2211 172 26 26 chr1 121279380 121279782 -75915650 - MTD LTR MaLR 0 419 15 7 1510 213 39 0 0 chr1 121279782 121279808 -75915624 + (CAG)n Simple_repeat Simple_repeat 1 26 0 7 1510 2211 172 26 26 chr1 121279808 121279824 -75915608 - MTD LTR MaLR -405 14 1 7 1510 288 237 13 38 chr1 121280082 121280161 -75915271 - MIR SINE MIR -69 193 117 7 1510 870 76 0 0 chr1 121280463 121280582 -75914850 + (GA)n Simple_repeat Simple_repeat 2 120 0 7 1510 352 238 109 0 chr1 121281327 121281428 -75914004 + PB1D7 SINE Alu 1 112 -8 7 1510 261 165 154 0 chr1 121281463 121281554 -75913878 + RMER1B Other Other 957 1061 -5 7 1510 383 269 11 0 chr1 121281575 121281668 -75913764 + ID_B1 SINE B4 121 214 -10 7 1510 487 293 38 0 chr1 121281829 121281962 -75913470 - MIRb SINE MIR -110 158 21 7 1510 542 51 13 0 chr1 121281972 121282050 -75913382 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1510 635 240 110 0 chr1 121282215 121282361 -75913071 - RSINE1 SINE B4 -2 163 2 7 1510 401 336 15 0 chr1 121283416 121283550 -75911882 + (TGGG)n Simple_repeat Simple_repeat 1 136 0 7 1510 251 239 40 40 chr1 121283931 121284005 -75911427 + ID_B1 SINE B4 124 197 -27 7 1510 863 201 42 16 chr1 121284274 121284466 -75910966 + B3A SINE B2 2 198 0 7 1510 705 223 12 166 chr1 121284494 121284741 -75910691 + ID_B1 SINE B4 3 211 -13 7 1510 294 260 17 96 chr1 121284744 121284859 -75910573 + MT2B LTR ERVL 152 257 -344 7 1510 737 199 0 0 chr1 121284767 121284903 -75910529 + B1_Mur2 SINE Alu 13 148 -1 7 1510 286 301 81 87 chr1 121284770 121284919 -75910513 + B4A SINE B4 101 248 -44 7 1510 543 69 0 0 chr1 121284985 121285057 -75910375 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 7 1510 216 0 0 0 chr1 121285217 121285241 -75910191 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1510 238 259 43 0 chr1 121286866 121286950 -75908482 - MIR SINE MIR -38 170 79 7 1510 936 244 75 15 chr1 121287672 121287872 -75907560 - ID_B1 SINE B4 -11 213 2 7 1510 465 304 0 42 chr1 121288922 121289066 -75906366 - B3A SINE B2 -2 196 59 7 1510 378 107 0 0 chr1 121289114 121289170 -75906262 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1510 463 240 10 0 chr1 121289328 121289432 -75906000 + ID_B1 SINE B4 113 217 -7 7 1510 500 225 101 0 chr1 121289457 121289586 -75905846 + B3A SINE B2 5 146 -52 7 1510 201 290 29 0 chr1 121289815 121289884 -75905548 + MIRc SINE MIR 83 153 -115 7 1510 810 336 12 8 chr1 121290056 121290299 -75905133 - B4 SINE B4 -3 289 46 7 1510 644 290 27 27 chr1 121291691 121291914 -75903518 + MTD LTR MaLR 2 224 -195 7 1510 891 192 92 10 chr1 121291988 121292183 -75903249 + MTD LTR MaLR 196 406 -13 7 1510 478 211 22 57 chr1 121292262 121292416 -75903016 - B4A SINE B4 0 292 148 7 1510 555 153 0 0 chr1 121292505 121292603 -75902829 + CT-rich Low_complexity Low_complexity 3 100 0 7 1510 690 234 136 16 chr1 121292609 121292800 -75902632 - B3 SINE B2 -1 215 2 7 1510 772 251 133 0 chr1 121292818 121293013 -75902419 - ID_B1 SINE B4 0 224 4 7 1510 300 53 0 0 chr1 121293418 121293456 -75901976 + (CCCCCA)n Simple_repeat Simple_repeat 3 40 0 8 1510 666 276 117 5 chr1 121293800 121293997 -75901435 - ID_B1 SINE B4 0 224 6 8 1510 212 294 191 0 chr1 121295037 121295050 -75900382 - ID4_ SINE ID -2 81 1 8 1510 231 182 254 0 chr1 121295050 121295105 -75900327 - ID SINE ID -155 69 1 8 1510 220 309 100 0 chr1 121295131 121295241 -75900191 + L2b LINE L2 3039 3159 -216 8 1510 331 303 0 0 chr1 121295430 121295506 -75899926 + ID_B1 SINE B4 82 157 -67 8 1510 280 327 0 9 chr1 121295644 121295752 -75899680 - MurSatRep1 Unknown Unknown -1810 327 221 8 1510 471 221 95 54 chr1 121295762 121295910 -75899522 + RSINE1 SINE B4 12 165 0 8 1510 448 293 21 35 chr1 121296103 121296248 -75899184 + ID_B1 SINE B4 2 144 -80 8 1510 436 180 23 9 chr1 121296327 121296434 -75898998 - B1_Mur2 SINE Alu -2 147 7 8 1510 513 283 24 178 chr1 121296611 121296903 -75898529 - B4 SINE B4 -1 291 45 8 1510 216 0 0 0 chr1 121296926 121296950 -75898482 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 8 1510 752 69 0 0 chr1 121296953 121297054 -75898378 - B1_Mur3 SINE Alu -9 140 40 8 1510 265 203 0 48 chr1 121297002 121297064 -75898368 - 4.5SRNA scRNA scRNA -8 86 28 8 1510 238 321 0 12 chr1 121297852 121297934 -75897498 + G-rich Low_complexity Low_complexity 5 85 0 8 1510 712 296 5 0 chr1 121298062 121298265 -75897167 + L1M4 LINE L1 4123 4326 -1820 8 1510 734 227 19 0 chr1 121298283 121298437 -75896995 + ID_B1 SINE B4 53 209 -15 8 1510 546 16 0 0 chr1 121298437 121298500 -75896932 + (GAAAA)n Simple_repeat Simple_repeat 4 66 0 8 1510 500 0 17 0 chr1 121298500 121298560 -75896872 + (GGGGA)n Simple_repeat Simple_repeat 2 62 0 8 1510 1370 32 0 12 chr1 121298560 121298811 -75896621 + (GGAGA)n Simple_repeat Simple_repeat 1 247 0 8 1510 423 0 0 0 chr1 121298908 121298955 -75896477 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 8 1510 857 274 48 8 chr1 121298968 121299237 -75896195 + B4A SINE B4 28 281 -11 8 1510 629 191 23 8 chr1 121299339 121299471 -75895961 + B1_Mur1 SINE Alu 16 149 0 8 1510 1165 159 25 10 chr1 121299487 121299690 -75895742 + B3 SINE B2 2 207 -9 8 1510 1126 192 25 5 chr1 121300093 121300297 -75895135 - B3 SINE B2 -6 210 3 8 1510 481 252 122 0 chr1 121300322 121300445 -75894987 - RSINE1 SINE B4 -25 140 3 8 1510 942 225 28 14 chr1 121300479 121300695 -75894737 - ID_B1 SINE B4 -3 221 3 8 1510 282 295 72 24 chr1 121300704 121300829 -75894603 - MIRb SINE MIR -76 192 62 8 1510 218 228 6 23 chr1 121301678 121301758 -75893674 + MIRm SINE MIR 84 158 -110 8 1510 198 0 0 0 chr1 121302084 121302106 -75893326 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 1510 563 271 129 6 chr1 121302282 121302460 -75892972 - ID_B1 SINE B4 -21 203 4 8 1510 2520 98 3 0 chr1 121302670 121302995 -75892437 + ORR1A2 LTR MaLR 2 327 0 8 1510 238 150 47 62 chr1 121303375 121303439 -75891993 + MIR SINE MIR 81 143 -119 8 1510 394 292 97 38 chr1 121303855 121304040 -75891392 + B3A SINE B2 1 196 -2 8 1510 468 0 0 0 chr1 121304749 121304801 -75890631 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1510 258 32 0 0 chr1 121304999 121305030 -75890402 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1510 465 205 76 8 chr1 121305036 121305154 -75890278 + B1F SINE Alu 22 147 -2 8 1510 705 234 111 29 chr1 121305163 121305370 -75890062 - ID_B1 SINE B4 0 224 1 8 1510 668 255 12 6 chr1 121306714 121306876 -75888556 + ID_B1 SINE B4 1 163 -61 8 1510 235 292 169 0 chr1 121306807 121306896 -75888536 + PB1D10 SINE Alu 14 117 0 8 1510 224 353 56 28 chr1 121307308 121307451 -75887981 + MIR SINE MIR 106 252 -10 8 1510 788 273 52 0 chr1 121307580 121307774 -75887658 + ID_B1 SINE B4 21 224 0 8 1510 379 262 93 0 chr1 121307772 121307879 -75887553 + RSINE1 SINE B4 11 127 -38 8 1510 304 322 69 35 chr1 121308345 121308554 -75886878 + MIRb SINE MIR 39 254 -14 8 1510 192 238 0 0 chr1 121308519 121308561 -75886871 + L2c LINE L2 3346 3387 0 8 1510 4144 109 47 5 chr1 121308636 121309254 -75886178 + Lx LINE L1 6007 6650 -4 8 1510 434 266 240 12 chr1 121309470 121309641 -75885791 + ID_B1 SINE B4 8 217 -7 8 1510 667 303 22 0 chr1 121310519 121310704 -75884728 + ID_B1 SINE B4 11 199 -25 8 1510 556 281 139 6 chr1 121310951 121311116 -75884316 + B4A SINE B4 2 188 -104 8 1510 320 0 25 0 chr1 121311601 121311641 -75883791 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1510 372 330 0 60 chr1 121311641 121311757 -75883675 - RSINE1 SINE B4 -26 139 31 8 1510 989 79 7 0 chr1 121316626 121316766 -75878666 + (TC)n Simple_repeat Simple_repeat 1 141 0 8 1510 220 191 0 0 chr1 121317529 121317576 -75877856 + G-rich Low_complexity Low_complexity 2 48 0 8 1510 55 62 0 0 chr1 121317743 121317840 -75877592 + GC_rich Low_complexity Low_complexity 1 97 0 8 1510 21 0 0 0 chr1 121318510 121318531 -75876901 + GC_rich Low_complexity Low_complexity 1 21 0 8 1510 708 12 0 0 chr1 121319728 121319809 -75875623 + (TC)n Simple_repeat Simple_repeat 1 81 0 8 1510 183 361 12 0 chr1 121320689 121320772 -75874660 + L2c LINE L2 3081 3164 -223 8 1510 495 48 0 0 chr1 121321690 121321752 -75873680 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1510 853 281 67 52 chr1 121321846 121321920 -75873512 + B4 SINE B4 10 81 -211 8 1510 817 244 27 27 chr1 121321920 121322143 -75873289 + ID_B1 SINE B4 2 224 0 8 1510 853 281 67 52 chr1 121322143 121322335 -75873097 + B4 SINE B4 82 280 -12 8 1510 303 28 0 0 chr1 121322642 121322678 -75872754 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1510 509 306 7 34 chr1 121322705 121322854 -75872578 - B4 SINE B4 -19 273 129 8 1510 309 191 88 0 chr1 121323061 121323129 -75872303 + B3A SINE B2 79 152 -46 8 1510 342 0 0 0 chr1 121323143 121323181 -75872251 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1510 733 300 24 14 chr1 121323609 121323822 -75871610 - ID_B1 SINE B4 -8 216 2 8 1510 297 205 56 78 chr1 121323827 121323917 -75871515 - B1_Mur1 SINE Alu -13 136 49 8 1510 255 61 0 0 chr1 121324235 121324268 -75871164 + (GAA)n Simple_repeat Simple_repeat 2 34 0 8 1510 244 322 37 70 chr1 121324325 121324512 -75870920 - YREP_Mm Unknown Unknown -1451 361 181 8 1510 540 271 14 28 chr1 121324371 121324515 -75870917 + ID_B1 SINE B4 82 223 -1 8 1510 600 293 100 39 chr1 121324531 121324790 -75870642 + B4A SINE B4 10 284 -8 8 1510 339 97 13 53 chr1 121324865 121324941 -75870491 + GA-rich Low_complexity Low_complexity 1 73 0 8 1510 844 177 4 4 chr1 121325251 121325506 -75869926 + (TG)n Simple_repeat Simple_repeat 1 255 0 8 1510 1064 68 25 0 chr1 121325637 121325800 -75869632 + (TG)n Simple_repeat Simple_repeat 1 167 0 8 1510 248 317 24 53 chr1 121326051 121326174 -75869258 + RSINE1 SINE B4 1 123 -42 8 1510 1119 84 8 25 chr1 121326174 121326420 -75869012 + (CATA)n Simple_repeat Simple_repeat 1 241 0 8 1510 248 317 24 53 chr1 121326420 121326464 -75868968 + RSINE1 SINE B4 124 163 -2 8 1510 191 62 62 0 chr1 121326464 121326496 -75868936 + (CATA)n Simple_repeat Simple_repeat 1 34 0 8 1510 455 243 18 18 chr1 121326526 121326635 -75868797 + PB1D9 SINE Alu 11 119 -1 8 1510 780 214 179 6 chr1 121326641 121326820 -75868612 + B3 SINE B2 4 213 -3 8 1510 26 0 0 0 chr1 121326823 121326849 -75868583 + AT_rich Low_complexity Low_complexity 1 26 0 8 1510 756 301 33 14 chr1 121327031 121327243 -75868189 + ID_B1 SINE B4 2 217 -7 8 1510 568 310 150 24 chr1 121327704 121327958 -75867474 - B4 SINE B4 -6 286 1 8 1510 288 53 0 0 chr1 121327989 121328027 -75867405 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 1510 278 194 118 15 chr1 121328028 121328096 -75867336 - PB1D10 SINE Alu -20 97 23 8 1510 635 234 30 54 chr1 121329203 121329370 -75866062 + RSINE1 SINE B4 3 165 0 8 1510 198 356 173 0 chr1 121329434 121329642 -75865790 - L2 LINE L2 -528 2891 2648 8 1510 274 189 200 50 chr1 121329716 121329816 -75865616 + PB1D10 SINE Alu 3 117 0 8 1510 380 363 14 14 chr1 121329856 121330004 -75865428 + RSINE1 SINE B4 3 150 -15 8 1510 750 250 71 5 chr1 121330016 121330213 -75865219 + ID_B1 SINE B4 14 223 -1 8 1510 549 245 61 8 chr1 121330218 121330352 -75865080 + RSINE1 SINE B4 1 142 -23 8 1510 381 324 70 21 chr1 121330368 121330475 -75864957 - L1M4b LINE L1 -5410 1924 1815 8 1510 245 29 29 0 chr1 121330475 121330509 -75864923 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1510 381 324 70 21 chr1 121330509 121330587 -75864845 - L1M4b LINE L1 -5520 1814 1730 8 1510 690 0 0 0 chr1 121330631 121330715 -75864717 - L1Md_A LINE L1 0 6582 6499 8 1510 687 229 0 35 chr1 121330738 121330883 -75864549 - B1_Mur1 SINE Alu -7 142 3 8 1510 21 0 0 0 chr1 121330883 121330904 -75864528 + AT_rich Low_complexity Low_complexity 1 21 0 8 1510 208 250 0 0 chr1 121330914 121330927 -75864505 + A-rich Low_complexity Low_complexity 1 13 0 8 1510 1210 68 0 0 chr1 121330927 121331073 -75864359 + B1_Mm SINE Alu 2 147 0 8 1510 208 250 0 0 chr1 121331073 121331107 -75864325 + A-rich Low_complexity Low_complexity 14 47 0 8 1510 393 328 85 32 chr1 121331157 121331497 -75863935 - L2 LINE L2 -944 2475 2118 8 1510 207 100 0 0 chr1 121332159 121332189 -75863243 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 8 1510 245 262 0 32 chr1 121332194 121332257 -75863175 - B3A SINE B2 -22 176 116 8 1510 1104 81 0 0 chr1 121332302 121332438 -75862994 - B1_Mus2 SINE Alu -10 137 2 8 1510 689 193 14 43 chr1 121333535 121333676 -75861756 + B4 SINE B4 3 139 -153 9 1510 576 222 135 27 chr1 121333732 121333880 -75861552 + RSINE1 SINE B4 2 165 0 9 1510 283 190 0 65 chr1 121333945 121334007 -75861425 + B4 SINE B4 235 292 0 9 1510 624 14 0 0 chr1 121334330 121334403 -75861029 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1510 563 311 16 38 chr1 121334607 121334791 -75860641 + B4 SINE B4 15 194 -98 9 1510 204 302 0 0 chr1 121334843 121334896 -75860536 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1510 258 159 0 0 chr1 121334961 121335030 -75860402 + T-rich Low_complexity Low_complexity 51 119 0 9 1510 360 0 0 0 chr1 121335413 121335453 -75859979 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1510 686 308 55 31 chr1 121335465 121335720 -75859712 - B4A SINE B4 0 292 32 9 1510 254 303 55 63 chr1 121335861 121335988 -75859444 + MLT1A1 LTR MaLR 271 396 -12 9 1510 462 281 190 4 chr1 121336003 121336235 -75859197 - MLT1B LTR MaLR -20 370 96 9 1510 263 293 13 0 chr1 121336238 121336313 -75859119 + (TG)n Simple_repeat Simple_repeat 1 76 0 9 1510 309 263 173 32 chr1 121336331 121336516 -75858916 - B4A SINE B4 -81 211 1 9 1510 374 254 86 49 chr1 121336528 121336707 -75858725 - B3A SINE B2 0 195 14 9 1510 575 273 8 8 chr1 121336773 121336906 -75858526 - RSINE1 SINE B4 -30 135 3 9 1510 267 263 26 0 chr1 121336914 121336990 -75858442 - MLT1B LTR MaLR -289 101 24 9 1510 976 110 7 27 chr1 121337312 121337461 -75857971 + B1_Mus2 SINE Alu 1 146 -1 9 1510 663 246 144 17 chr1 121337558 121337732 -75857700 - ID_B1 SINE B4 -28 196 1 9 1510 392 252 77 104 chr1 121337812 121337843 -75857589 + Tigger7 DNA MER2_type 2313 2330 -161 9 1510 433 309 0 134 chr1 121337843 121338015 -75857417 - RSINE1 SINE B4 -14 151 3 9 1510 392 252 77 104 chr1 121338015 121338165 -75857267 + Tigger7 DNA MER2_type 2331 2489 -2 9 1510 384 168 197 63 chr1 121338273 121338400 -75857032 + B3A SINE B2 43 186 -12 9 1510 489 269 29 0 chr1 121339418 121339522 -75855910 - PB1D7 SINE Alu -2 118 12 9 1510 504 217 0 94 chr1 121339582 121339709 -75855723 - PB1D10 SINE Alu 0 117 3 9 1510 901 238 5 22 chr1 121339709 121339791 -75855641 - ID SINE ID -145 79 1 9 1510 499 76 0 0 chr1 121339822 121339888 -75855544 + 4.5SRNA scRNA scRNA 1 66 -28 9 1510 345 259 28 119 chr1 121340359 121340593 -75854839 - B4 SINE B4 -1 291 2 9 1510 818 237 23 89 chr1 121340974 121341226 -75854206 - MTE2a LTR MaLR -8 371 137 9 1510 1811 220 73 0 chr1 121341226 121341608 -75853824 + MTD LTR MaLR 2 411 -8 9 1510 477 195 90 158 chr1 121341583 121341760 -75853672 - MTE2a LTR MaLR -210 169 5 9 1510 733 222 62 53 chr1 121342468 121342677 -75852755 + B3 SINE B2 1 211 -5 9 1510 489 76 0 0 chr1 121342677 121342743 -75852689 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 1510 496 279 106 10 chr1 121342905 121343104 -75852328 - MIRb SINE MIR -29 239 22 9 1510 774 166 43 7 chr1 121343804 121343944 -75851488 + B1F2 SINE Alu 5 149 0 9 1510 491 128 12 0 chr1 121343982 121344068 -75851364 + (TA)n Simple_repeat Simple_repeat 2 88 0 9 1510 185 83 28 0 chr1 121344069 121344105 -75851327 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1510 638 241 55 11 chr1 121344123 121344322 -75851110 - B3A SINE B2 -5 211 15 9 1510 824 240 84 55 chr1 121344365 121344638 -75850794 + B4 SINE B4 2 282 -10 9 1510 254 241 0 0 chr1 121344646 121344700 -75850732 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1510 236 276 0 0 chr1 121345094 121345152 -75850280 + CT-rich Low_complexity Low_complexity 3 60 0 9 1510 627 276 8 0 chr1 121345153 121345287 -75850145 - B1F SINE Alu 0 149 15 9 1510 284 240 62 107 chr1 121345192 121345304 -75850128 - MT2B LTR ERVL -338 263 157 9 1510 602 275 148 0 chr1 121345315 121345497 -75849935 - ID_B1 SINE B4 -14 210 2 9 1510 1034 81 42 0 chr1 121345536 121345691 -75849741 + B2_Mm2 SINE B2 1 194 -22 9 1510 387 0 0 0 chr1 121345698 121345741 -75849691 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 9 1510 560 282 143 6 chr1 121346031 121346213 -75849219 + ID_B1 SINE B4 9 215 -9 9 1510 354 376 0 8 chr1 121346240 121346358 -75849074 + RSINE1 SINE B4 31 147 -18 9 1510 625 227 99 70 chr1 121346383 121346596 -75848836 + B4A SINE B4 1 219 -73 9 1510 564 89 0 0 chr1 121346597 121346676 -75848756 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 9 1510 1019 217 15 5 chr1 121346692 121346896 -75848536 + B3 SINE B2 5 210 -6 9 1510 21 0 0 0 chr1 121346897 121346918 -75848514 + AT_rich Low_complexity Low_complexity 1 21 0 9 1510 844 160 21 7 chr1 121346929 121347074 -75848358 + B1_Mus2 SINE Alu 1 147 0 9 1510 399 21 0 0 chr1 121347168 121347216 -75848216 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1510 357 219 14 0 chr1 121347216 121347289 -75848143 + ID_B1 SINE B4 145 218 -6 9 1510 269 184 61 0 chr1 121347245 121347294 -75848138 + PB1D7 SINE Alu 68 119 -1 9 1510 734 281 0 7 chr1 121348644 121348798 -75846634 + RSINE1 SINE B4 3 155 -10 9 1510 549 110 0 0 chr1 121348845 121348927 -75846505 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 9 1510 856 216 5 89 chr1 121348995 121349208 -75846224 + B3A SINE B2 1 195 -3 9 1510 233 0 0 59 chr1 121349432 121349466 -75845966 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 9 1510 846 234 77 10 chr1 121349466 121349503 -75845929 - B4A SINE B4 -71 221 185 9 1510 347 41 0 20 chr1 121349503 121349553 -75845879 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 9 1510 846 234 77 10 chr1 121349553 121349722 -75845710 - B4A SINE B4 -108 184 2 9 1510 321 313 60 10 chr1 121350162 121350262 -75845170 + B4A SINE B4 186 290 -2 9 1510 629 76 11 0 chr1 121350264 121350356 -75845076 + (CA)n Simple_repeat Simple_repeat 1 93 0 9 1510 211 173 57 19 chr1 121351737 121351790 -75843642 - L2 LINE L2 -686 2733 2679 9 1510 406 297 85 8 chr1 121351797 121351926 -75843506 - ID_B1 SINE B4 0 224 86 9 1510 288 261 83 83 chr1 121352123 121352219 -75843213 - B4 SINE B4 0 292 197 9 1510 504 45 0 0 chr1 121352237 121352304 -75843128 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1510 684 149 53 0 chr1 121352308 121352422 -75843010 - PB1D9 SINE Alu 0 120 1 9 1510 468 0 0 0 chr1 121352542 121352594 -75842838 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1510 231 36 0 0 chr1 121352939 121352967 -75842465 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1510 548 222 26 53 chr1 121352967 121353081 -75842351 + RSINE1 SINE B4 55 165 0 9 1510 549 0 0 0 chr1 121353106 121353167 -75842265 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 9 1510 216 0 0 0 chr1 121353695 121353719 -75841713 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1510 405 0 0 0 chr1 121354433 121354478 -75840954 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1510 369 0 0 0 chr1 121354478 121354518 -75840914 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1510 279 0 0 0 chr1 121355073 121355104 -75840328 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1510 745 266 44 61 chr1 121355144 121355372 -75840060 + ID_B1 SINE B4 1 224 0 9 1510 270 253 189 0 chr1 121355385 121355480 -75839952 + B1F SINE Alu 6 118 -31 9 1510 306 0 0 0 chr1 121355508 121355542 -75839890 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1510 493 294 62 49 chr1 121355548 121355733 -75839699 - ID_B1 SINE B4 -16 208 18 9 1510 201 74 0 0 chr1 121356133 121356160 -75839272 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1510 402 243 112 0 chr1 121356160 121356267 -75839165 - ID_B1 SINE B4 -10 214 96 9 1510 855 169 0 0 chr1 121356514 121356686 -75838746 + CT-rich Low_complexity Low_complexity 4 175 0 9 1510 237 256 81 58 chr1 121356726 121356813 -75838619 - B1_Mur4 SINE Alu -51 99 11 9 1510 371 284 119 69 chr1 121356735 121356894 -75838538 - ID_B1 SINE B4 -55 169 3 9 1510 513 267 17 0 chr1 121357009 121357125 -75838307 + RSINE1 SINE B4 48 165 0 9 1510 574 191 19 9 chr1 121357167 121357273 -75838159 + PB1D9 SINE Alu 2 108 -12 9 1510 188 61 61 0 chr1 121357277 121357310 -75838122 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 9 1510 1014 219 47 9 chr1 121357450 121357662 -75837770 + ID_B1 SINE B4 4 223 -1 9 1510 475 259 158 50 chr1 121358250 121358510 -75836922 + B4A SINE B4 2 289 -3 9 1510 614 266 432 0 chr1 121358742 121358941 -75836491 - B4 SINE B4 -6 286 2 9 1510 21 0 0 0 chr1 121359487 121359508 -75835924 + AT_rich Low_complexity Low_complexity 1 21 0 9 1510 207 100 0 0 chr1 121359508 121359538 -75835894 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1510 350 222 123 0 chr1 121359693 121359774 -75835658 + ID_B1 SINE B4 86 176 -48 9 1510 225 0 0 0 chr1 121359788 121359813 -75835619 + (TA)n Simple_repeat Simple_repeat 1 25 0 9 1510 234 0 0 0 chr1 121359813 121359838 -75835594 + (GA)n Simple_repeat Simple_repeat 2 27 0 9 1510 226 257 75 75 chr1 121359866 121359946 -75835486 + RSINE1 SINE B4 1 80 -85 9 1510 232 268 95 24 chr1 121359879 121359963 -75835469 + RMER10A LTR ERVL 301 390 -52 9 1510 745 268 34 10 chr1 121360034 121360241 -75835191 + B3 SINE B2 1 212 -4 9 1510 544 279 7 35 chr1 121360248 121360389 -75835043 + RSINE1 SINE B4 12 148 -17 9 1510 477 0 0 0 chr1 121360404 121360457 -75834975 + (CATA)n Simple_repeat Simple_repeat 2 54 0 9 1510 309 338 82 101 chr1 121360823 121360852 -75834580 - B4A SINE B4 0 292 267 9 1510 207 0 0 0 chr1 121360852 121360875 -75834557 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1510 333 0 0 0 chr1 121360875 121360911 -75834521 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1510 309 338 82 101 chr1 121360911 121361137 -75834295 - B4A SINE B4 -26 266 42 9 1510 641 236 76 19 chr1 121361239 121361497 -75833935 + MTE2b LTR MaLR 15 362 -17 1 1510 731 260 5 78 chr1 121361865 121362037 -75833395 + ID_B1 SINE B4 23 180 -44 1 1510 322 306 43 35 chr1 121362037 121362152 -75833280 + PB1D10 SINE Alu 2 117 0 1 1510 501 62 0 0 chr1 121362499 121362564 -75832868 + (TGG)n Simple_repeat Simple_repeat 2 66 0 1 1510 452 183 163 7 chr1 121362564 121362679 -75832753 + B1_Mur4 SINE Alu 16 144 -5 1 1510 450 0 0 0 chr1 121362679 121362729 -75832703 + (CAATA)n Simple_repeat Simple_repeat 5 54 0 1 1510 709 12 0 0 chr1 121362733 121362815 -75832617 + B2_Mm1t SINE B2 1 82 -111 1 1510 1385 216 18 18 chr1 121362854 121362965 -75832467 + RMER17C LTR ERVK 76 184 -226 1 1510 744 0 10 20 chr1 121362965 121363063 -75832369 + (TTCTC)n Simple_repeat Simple_repeat 5 101 0 1 1510 1385 216 18 18 chr1 121363063 121363286 -75832146 + RMER17C LTR ERVK 185 410 0 1 1510 590 204 8 58 chr1 121363477 121363597 -75831835 + PB1D9 SINE Alu 2 115 -5 1 1510 301 266 224 83 chr1 121364385 121364639 -75830793 + B4 SINE B4 2 291 -1 1 1510 420 297 0 33 chr1 121364711 121364864 -75830568 + (CACG)n Simple_repeat Simple_repeat 2 149 0 1 1510 623 231 91 0 chr1 121365104 121365247 -75830185 + RSINE1 SINE B4 2 157 -8 1 1510 345 47 0 0 chr1 121365257 121365300 -75830132 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1510 740 238 58 6 chr1 121365392 121365565 -75829867 + B3A SINE B2 1 182 -16 1 1510 319 300 40 48 chr1 121365593 121365719 -75829713 - RSINE1 SINE B4 -29 136 12 1 1510 792 212 6 18 chr1 121365840 121366003 -75829429 - RSINE1 SINE B4 0 165 5 1 1510 464 305 18 55 chr1 121366022 121366185 -75829247 + RSINE1 SINE B4 4 160 -5 1 1510 538 276 98 35 chr1 121366319 121366592 -75828840 - B4A SINE B4 -6 286 8 1 1510 180 125 0 0 chr1 121367629 121367661 -75827771 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1510 610 183 0 25 chr1 121367791 121367909 -75827523 - PB1D10 SINE Alu 0 117 3 1 1510 268 237 155 0 chr1 121368491 121368588 -75826844 - ID_B1 SINE B4 -2 222 111 1 1510 459 0 0 0 chr1 121369023 121369074 -75826358 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1510 387 0 0 0 chr1 121369074 121369116 -75826316 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1510 258 32 0 0 chr1 121369646 121369677 -75825755 + (CTGGGG)n Simple_repeat Simple_repeat 1 31 0 1 1510 843 227 40 35 chr1 121369677 121369878 -75825554 + ID_B1 SINE B4 23 224 0 1 1510 456 19 0 0 chr1 121369893 121369946 -75825486 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1510 233 329 22 79 chr1 121369970 121370059 -75825373 + ID_B1 SINE B4 134 217 -7 1 1510 594 219 18 0 chr1 121370509 121370623 -75824809 - PB1D9 SINE Alu -2 118 3 1 1510 249 261 159 0 chr1 121370855 121370943 -75824489 + ID_B1 SINE B4 19 120 -104 1 1510 278 183 14 0 chr1 121370995 121371066 -75824366 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 1 1510 736 218 62 45 chr1 121371575 121371753 -75823679 + ID_B1 SINE B4 44 224 0 1 1510 235 328 0 0 chr1 121371797 121371858 -75823574 + B1_Mus2 SINE Alu 1 61 -86 1 1510 394 232 72 21 chr1 121371805 121371902 -75823530 + ID_B1 SINE B4 90 191 -33 1 1510 232 211 33 50 chr1 121372003 121372063 -75823369 + ID_B1 SINE B4 165 223 -1 1 1510 411 194 18 9 chr1 121372066 121372175 -75823257 + GA-rich Low_complexity Low_complexity 1 110 0 1 1510 726 261 47 88 chr1 121372203 121372396 -75823036 + B3A SINE B2 14 198 0 1 1511 418 280 86 59 chr1 121372709 121372861 -75822571 + RSINE1 SINE B4 10 165 0 1 1511 539 247 151 97 chr1 121373222 121373428 -75822004 + ID_B1 SINE B4 7 223 -1 1 1511 236 352 65 69 chr1 121373728 121374003 -75821429 + ORR1D2 LTR MaLR 71 344 -26 1 1511 392 181 60 0 chr1 121374189 121374272 -75821160 + B3 SINE B2 128 215 -1 1 1511 411 272 87 0 chr1 121374865 121374957 -75820475 - PB1D10 SINE Alu -15 102 3 1 1511 275 284 27 0 chr1 121375224 121375298 -75820134 + B4A SINE B4 2 77 -215 1 1511 270 0 0 0 chr1 121375305 121375335 -75820097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1511 385 271 176 57 chr1 121375350 121375526 -75819906 + B3A SINE B2 1 197 -1 1 1511 272 270 56 119 chr1 121375556 121375699 -75819733 + B1F SINE Alu 9 142 -7 1 1511 550 288 8 8 chr1 121375638 121375771 -75819661 + B4 SINE B4 160 292 0 1 1511 304 319 58 17 chr1 121375776 121375984 -75819448 + L1M5 LINE L1 4948 5162 -984 1 1511 210 128 0 0 chr1 121375993 121376032 -75819400 + (CACAG)n Simple_repeat Simple_repeat 5 43 0 1 1511 258 107 54 0 chr1 121376156 121376212 -75819220 + GA-rich Low_complexity Low_complexity 2 60 0 1 1511 704 200 0 6 chr1 121376821 121377002 -75818430 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1511 571 280 102 57 chr1 121377059 121377324 -75818108 - B4 SINE B4 -6 286 10 1 1511 212 0 36 0 chr1 121377679 121377707 -75817725 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1511 625 188 62 0 chr1 121377974 121378102 -75817330 + RSINE1 SINE B4 2 137 -28 1 1511 369 0 0 0 chr1 121378112 121378153 -75817279 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1511 1085 170 76 20 chr1 121378191 121378389 -75817043 + B3 SINE B2 2 210 -6 1 1511 1152 215 104 0 chr1 121378446 121378706 -75816726 + ORR1E LTR MaLR 65 351 -8 1 1511 614 219 0 0 chr1 121378737 121378851 -75816581 - PB1D10 SINE Alu 0 117 4 1 1511 397 287 90 39 chr1 121378883 121379039 -75816393 + RSINE1 SINE B4 2 165 0 1 1511 278 315 89 85 chr1 121379069 121379305 -75816127 - ORR1D2 LTR MaLR -48 322 86 1 1511 961 203 51 19 chr1 121379366 121379582 -75815850 + ID_B1 SINE B4 1 223 -1 1 1511 644 250 61 0 chr1 121379586 121379734 -75815698 + B3A SINE B2 1 157 -41 1 1511 21 0 0 0 chr1 121379789 121379810 -75815622 + AT_rich Low_complexity Low_complexity 1 21 0 1 1511 412 245 12 25 chr1 121380327 121380463 -75814969 - B3A SINE B2 0 216 89 1 1511 1121 217 5 5 chr1 121380808 121381016 -75814416 + B3 SINE B2 2 209 -7 1 1511 464 246 0 76 chr1 121381418 121381550 -75813882 + ID_B1 SINE B4 103 224 0 1 1511 451 218 11 30 chr1 121381664 121382038 -75813394 + (TATG)n Simple_repeat Simple_repeat 1 366 0 1 1511 289 228 0 192 chr1 121382126 121382191 -75813241 - B4A SINE B4 -1 291 231 1 1511 473 222 209 33 chr1 121382191 121382373 -75813059 - B3 SINE B2 -2 214 1 1 1511 289 228 0 192 chr1 121382373 121382432 -75813000 - B4A SINE B4 -62 230 191 1 1511 440 178 0 0 chr1 121382400 121382473 -75812959 - PB1D9 SINE Alu -7 113 41 1 1511 594 208 31 31 chr1 121382476 121382605 -75812827 - ORR1D2 LTR MaLR -4 366 238 1 1511 355 216 144 0 chr1 121382613 121382710 -75812722 - ORR1D2 LTR MaLR -259 111 1 1 1511 238 196 20 0 chr1 121382710 121382761 -75812671 - B1_Mus2 SINE Alu -95 52 1 1 1511 757 276 88 4 chr1 121382761 121382969 -75812463 - B4A SINE B4 -62 230 4 1 1511 558 200 8 57 chr1 121383016 121383138 -75812294 - PB1D10 SINE Alu 0 117 2 1 1511 305 195 220 42 chr1 121383907 121384025 -75811407 - HAL1-3A_ME LINE L1 -749 2109 1971 1 1511 552 264 179 11 chr1 121384147 121384331 -75811101 - B4A SINE B4 -63 229 15 1 1511 272 251 117 28 chr1 121384447 121384609 -75810823 + ID_B1 SINE B4 1 211 -13 1 1511 378 0 0 0 chr1 121384650 121384692 -75810740 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1511 318 244 81 0 chr1 121384694 121384780 -75810652 - B3A SINE B2 -43 155 63 1 1511 282 21 42 21 chr1 121385089 121385137 -75810295 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 1511 479 124 0 37 chr1 121385289 121385355 -75810077 + polypurine Low_complexity Low_complexity 2 66 0 1 1511 931 73 0 53 chr1 121385355 121385544 -75809888 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1511 479 124 0 37 chr1 121385544 121385586 -75809846 + polypurine Low_complexity Low_complexity 67 106 0 1 1511 940 67 0 53 chr1 121385589 121385778 -75809654 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1511 192 77 0 0 chr1 121385964 121385990 -75809442 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1511 375 149 92 26 chr1 121385990 121386056 -75809376 - B1_Mus2 SINE Alu -9 138 66 1 1511 631 258 130 28 chr1 121386153 121386368 -75809064 + B4 SINE B4 15 251 -41 1 1511 536 250 25 18 chr1 121386549 121386712 -75808720 + RSINE1 SINE B4 2 165 0 1 1511 245 164 0 52 chr1 121386717 121386775 -75808657 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1511 659 194 174 0 chr1 121386892 121387047 -75808385 + B3A SINE B2 1 182 -16 1 1511 423 0 0 0 chr1 121387166 121387213 -75808219 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1511 277 160 215 51 chr1 121387652 121387731 -75807701 - ID_B1 SINE B4 -7 217 126 1 1511 862 291 43 18 chr1 121387895 121388175 -75807257 + B4A SINE B4 1 287 -5 1 1511 758 213 85 6 chr1 121388548 121388713 -75806719 + B3A SINE B2 2 179 -19 1 1511 1005 251 63 43 chr1 121389003 121389392 -75806040 - RLTR26 LTR ERVK -226 416 1 1 1511 400 145 0 28 chr1 121389477 121389568 -75805864 + MTD LTR MaLR 338 421 0 1 1511 424 265 169 52 chr1 121389730 121389961 -75805471 + B4A SINE B4 29 286 -6 1 1511 220 297 68 0 chr1 121390084 121390158 -75805274 + PB1D10 SINE Alu 34 112 -5 1 1511 408 284 141 6 chr1 121390211 121390367 -75805065 + B3A SINE B2 3 179 -19 1 1511 962 189 52 10 chr1 121390992 121391185 -75804247 + B3 SINE B2 15 215 -1 1 1511 567 0 0 0 chr1 121391231 121391294 -75804138 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1511 330 0 60 0 chr1 121392554 121392604 -75802828 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1511 1117 44 0 0 chr1 121392604 121392739 -75802693 - B1_Mus2 SINE Alu -11 136 2 1 1511 1167 205 71 58 chr1 121392955 121393281 -75802151 - ORR1D2 LTR MaLR -40 330 1 1 1511 724 239 124 76 chr1 121393999 121394368 -75801064 + MTD LTR MaLR 6 405 -14 1 1511 459 35 0 0 chr1 121394640 121394697 -75800735 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1511 724 297 24 27 chr1 121394702 121394949 -75800483 - ID_B1 SINE B4 -20 272 30 1 1511 743 257 19 46 chr1 121394947 121395163 -75800269 - B4 SINE B4 -81 211 2 1 1511 652 307 18 14 chr1 121395377 121395598 -75799834 + ID_B1 SINE B4 2 223 -1 1 1511 755 284 46 0 chr1 121395667 121395885 -75799547 + B4A SINE B4 1 228 -64 1 1511 451 225 20 98 chr1 121395885 121396038 -75799394 + B1_Mur1 SINE Alu 2 142 -7 1 1511 182 37 0 36 chr1 121396481 121396509 -75798923 + (TAAAA)n Simple_repeat Simple_repeat 5 31 0 1 1511 455 254 92 0 chr1 121396535 121396677 -75798755 + RSINE1 SINE B4 8 162 -3 1 1511 715 194 21 7 chr1 121397045 121397190 -75798242 + B1_Mur2 SINE Alu 1 147 -2 1 1511 550 271 21 0 chr1 121397263 121397403 -75798029 + ID_B1 SINE B4 9 151 -73 1 1511 611 243 55 60 chr1 121397414 121397615 -75797817 + B3 SINE B2 7 206 -10 1 1511 270 0 0 0 chr1 121397699 121397729 -75797703 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1511 486 312 25 45 chr1 121398200 121398398 -75797034 - B4A SINE B4 -96 196 3 1 1511 314 23 23 0 chr1 121398786 121398829 -75796603 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1511 1451 77 0 5 chr1 121398867 121399063 -75796369 + B2_Mm2 SINE B2 1 195 0 1 1511 366 347 41 7 chr1 121399201 121399346 -75796086 + RSINE1 SINE B4 11 160 -5 1 1511 396 59 0 0 chr1 121399347 121399398 -75796034 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1511 742 220 42 31 chr1 121399414 121399606 -75795826 + B3A SINE B2 1 194 -4 1 1511 216 200 0 0 chr1 121399663 121399713 -75795719 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1511 758 251 39 0 chr1 121399890 121400093 -75795339 + ID_B1 SINE B4 3 213 -11 1 1511 358 200 0 0 chr1 121402320 121402385 -75793047 + RSINE1 SINE B4 64 128 -37 1 1511 254 29 29 0 chr1 121402385 121402420 -75793012 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1511 911 128 7 39 chr1 121402568 121402722 -75792710 - B1_Mur3 SINE Alu 0 149 1 1 1511 849 209 64 5 chr1 121402722 121402909 -75792523 - B3 SINE B2 -13 203 5 1 1511 492 262 127 110 chr1 121404428 121404656 -75790776 + B4 SINE B4 3 234 -58 1 1511 868 253 6 0 chr1 121404656 121404838 -75790594 + B3 SINE B2 4 186 -30 1 1511 294 29 0 0 chr1 121404906 121404941 -75790491 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1511 259 267 31 0 chr1 121404962 121405055 -75790377 + MIR SINE MIR 64 162 -106 1 1511 431 241 53 9 chr1 121405521 121405634 -75789798 + ID_B1 SINE B4 55 172 -52 1 1511 417 188 0 0 chr1 121405802 121405887 -75789545 + CT-rich Low_complexity Low_complexity 3 87 0 1 1511 423 132 0 0 chr1 121407767 121407835 -75787597 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1511 4676 80 5 2 chr1 121408023 121408664 -75786768 - L1_Mus3 LINE L1 0 6638 5996 1 1511 296 200 14 0 chr1 121408875 121408945 -75786487 + GA-rich Low_complexity Low_complexity 2 72 0 1 1511 851 194 0 0 chr1 121408957 121409101 -75786331 + B1_Mur3 SINE Alu 1 144 -5 1 1511 704 221 8 0 chr1 121409150 121409281 -75786151 + B1_Mur1 SINE Alu 3 134 -15 1 1511 313 262 0 15 chr1 121409278 121409344 -75786088 - B4 SINE B4 -4 288 224 1 1511 183 222 0 0 chr1 121409349 121409394 -75786038 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1511 203 88 29 0 chr1 121409492 121409526 -75785906 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1511 1209 249 92 20 chr1 121410405 121410469 -75784963 + MTEa LTR MaLR 2 64 -315 1 1511 2115 84 94 0 chr1 121410469 121410768 -75784664 + ORR1A2 LTR MaLR 1 327 0 1 1511 1209 249 92 20 chr1 121410768 121411052 -75784380 + MTEa LTR MaLR 65 375 -4 1 1511 189 0 0 0 chr1 121411286 121411307 -75784125 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1511 231 0 0 71 chr1 121411346 121411388 -75784044 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1511 509 224 186 0 chr1 121412103 121412259 -75783173 + B3 SINE B2 2 186 -30 1 1511 226 91 0 0 chr1 121412260 121412293 -75783139 + ORR1B2 LTR MaLR 1 33 -334 1 1511 947 193 61 0 chr1 121412527 121412724 -75782708 - ORR1D1 LTR MaLR 0 374 166 1 1511 665 153 6 0 chr1 121412724 121412881 -75782551 + GA-rich Low_complexity Low_complexity 1 158 0 1 1511 857 181 6 17 chr1 121412881 121413061 -75782371 - ORR1D1 LTR MaLR -193 181 4 1 1511 958 144 50 0 chr1 121413069 121413248 -75782184 - ORR1D1-int LTR MaLR -4 1366 1179 1 1511 1206 192 21 4 chr1 121413248 121413483 -75781949 + RLTR42 LTR ERVK 1 239 0 1 1511 614 251 43 6 chr1 121413483 121413647 -75781785 - ORR1D1-int LTR MaLR -189 1181 1012 1 1511 2154 159 38 0 chr1 121413815 121414187 -75781245 - ORR1B1 LTR MaLR -8 386 1 1 1511 2033 239 56 37 chr1 121414808 121415399 -75780033 - ORR1B1-int LTR MaLR -353 1017 416 1 1511 749 191 7 21 chr1 121415385 121415529 -75779903 + MTC LTR MaLR 280 421 0 1 1511 607 75 36 45 chr1 121415529 121415638 -75779794 - ORR1B1-int LTR MaLR -1262 108 1 1 1511 1330 174 165 51 chr1 121415673 121416007 -75779425 - ORR1B1 LTR MaLR -2 372 1 1 1511 225 0 0 0 chr1 121416425 121416450 -75778982 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1511 1103 44 7 0 chr1 121416450 121416586 -75778846 - B1_Mm SINE Alu -10 137 1 1 1511 706 243 113 55 chr1 121416588 121417022 -75778410 - RCHARR1 DNA MER1_type -13 961 665 1 1511 414 286 189 0 chr1 121417506 121417702 -75777730 - RMER5 LTR ERV1 0 534 302 1 1511 432 0 0 0 chr1 121418071 121418119 -75777313 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1511 201 260 0 0 chr1 121418126 121418176 -75777256 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1511 437 179 0 0 chr1 121418425 121418509 -75776923 + ID_B1 SINE B4 129 212 -12 1 1511 1074 82 0 20 chr1 121418671 121418820 -75776612 + B1_Mm SINE Alu 2 147 0 1 1511 392 284 98 53 chr1 121419010 121419274 -75776158 + B4 SINE B4 2 277 -15 1 1511 199 143 0 87 chr1 121419350 121419396 -75776036 - L2b LINE L2 -218 3157 3116 1 1511 276 287 151 32 chr1 121420549 121420801 -75774631 + B4A SINE B4 1 282 -10 1 1511 314 159 14 0 chr1 121421319 121421388 -75774044 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1511 209 364 63 9 chr1 121422096 121422207 -75773225 + MIR3 SINE MIR 8 124 -84 1 1511 245 164 0 82 chr1 121422608 121422681 -75772751 + (CCCCG)n Simple_repeat Simple_repeat 3 69 0 1 1511 553 256 119 6 chr1 121425538 121425715 -75769717 + B4A SINE B4 35 231 -61 1 1511 554 233 35 0 chr1 121425724 121425840 -75769592 + RSINE1 SINE B4 13 132 -33 1 1511 1011 171 51 10 chr1 121425862 121426057 -75769375 + B3 SINE B2 3 205 -11 1 1511 229 328 0 0 chr1 121426073 121426137 -75769295 + B4A SINE B4 223 286 -6 1 1511 1013 182 52 5 chr1 121426596 121426789 -75768643 + B3 SINE B2 1 202 -14 1 1511 567 152 30 0 chr1 121426789 121426888 -75768544 + U6 snRNA snRNA 3 104 -3 1 1511 294 290 205 46 chr1 121427249 121427444 -75767988 + B4A SINE B4 2 227 -65 1 1511 276 376 73 7 chr1 121427464 121427614 -75767818 + RSINE1 SINE B4 6 165 0 1 1511 747 85 9 0 chr1 121428260 121428366 -75767066 + B2_Mm1t SINE B2 2 108 -85 1 1511 520 217 52 9 chr1 121428365 121428481 -75766951 + B1F2 SINE Alu 27 147 -2 1 1511 23 0 0 0 chr1 121428483 121428506 -75766926 + AT_rich Low_complexity Low_complexity 1 23 0 1 1511 450 269 94 69 chr1 121428528 121428688 -75766744 + RSINE1 SINE B4 2 165 0 1 1511 27 49 0 0 chr1 121428703 121428744 -75766688 + AT_rich Low_complexity Low_complexity 1 41 0 1 1511 780 250 58 3 chr1 121429956 121430181 -75765251 - ID_B1 SINE B4 -46 246 11 1 1511 698 241 39 10 chr1 121430435 121430640 -75764792 + ID_B1 SINE B4 5 215 -9 1 1511 1230 178 5 0 chr1 121430730 121430938 -75764494 + B3 SINE B2 1 209 -7 1 1511 1708 180 73 25 chr1 121431094 121431492 -75763940 + MTD LTR MaLR 3 419 0 1 1511 3887 156 71 16 chr1 121431621 121431938 -75763494 + Lx5 LINE L1 5780 6141 -909 1 1511 366 23 0 0 chr1 121431938 121431981 -75763451 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1511 3887 156 71 16 chr1 121431981 121432427 -75763005 + Lx5 LINE L1 6142 6584 -466 1 1511 1671 168 147 0 chr1 121432527 121432860 -75762572 + RLTR14 LTR ERV1 1 382 0 1 1511 756 253 141 65 chr1 121432934 121433289 -75762143 + RMER5 LTR ERV1 128 509 -25 1 1511 543 230 139 11 chr1 121433285 121433465 -75761967 - RMER5 LTR ERV1 -10 524 322 1 1511 644 192 16 0 chr1 121433604 121433729 -75761703 - B1_Mur1 SINE Alu -5 144 18 1 1511 329 207 212 41 chr1 121433720 121433866 -75761566 - RMER5 LTR ERV1 -331 203 33 1 1511 1126 55 0 0 chr1 121434684 121434830 -75760602 + B1_Mus1 SINE Alu 1 146 -2 1 1511 217 68 0 43 chr1 121434831 121434877 -75760555 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1511 337 226 52 41 chr1 121435241 121435338 -75760094 + RSINE1 SINE B4 4 101 -64 1 1511 1103 81 0 0 chr1 121435386 121435534 -75759898 + B1_Mus1 SINE Alu 1 148 0 1 1511 423 0 0 0 chr1 121435578 121435625 -75759807 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1511 341 147 0 68 chr1 121435635 121435708 -75759724 - ORR1D2 LTR MaLR 0 374 307 1 1511 2353 102 93 12 chr1 121435709 121436127 -75759305 - RLTR28 LTR ERVL -1 523 72 1 1511 569 247 131 53 chr1 121436162 121436381 -75759051 - ORR1D2 LTR MaLR -61 298 61 1 1511 1183 77 71 11 chr1 121436430 121436447 -75758985 - B2_Mm2 SINE B2 0 195 174 1 1511 1221 34 0 0 chr1 121436447 121436593 -75758839 - B1_Mus1 SINE Alu 0 148 3 1 1511 1183 77 71 11 chr1 121436593 121436758 -75758674 - B2_Mm2 SINE B2 -22 173 2 1 1511 527 184 258 78 chr1 121436790 121436998 -75758434 - ORR1D2-int LTR MaLR -1256 253 1 1 1511 227 248 30 181 chr1 121436998 121437025 -75758407 - ORR1D2 LTR MaLR -18 401 379 1 1511 933 147 57 47 chr1 121437025 121437218 -75758214 + B2_Mm2 SINE B2 1 195 0 1 1511 1013 236 118 42 chr1 121437218 121437491 -75757941 - ORR1D2 LTR MaLR -41 378 50 1 1511 376 204 211 9 chr1 121437543 121437652 -75757780 - B4A SINE B4 -14 278 148 1 1511 870 126 234 5 chr1 121438061 121438245 -75757187 - URR1A DNA MER1_type 0 226 1 1 1511 1240 179 100 34 chr1 121438793 121439197 -75756235 - Lx2B LINE L1 -199 6801 6176 1 1511 255 310 175 12 chr1 121439202 121439217 -75756215 - B4A SINE B4 -41 251 237 1 1511 231 36 0 0 chr1 121439217 121439245 -75756187 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1511 255 310 175 12 chr1 121439245 121439260 -75756172 - B4A SINE B4 -56 236 179 1 1511 482 105 91 58 chr1 121439260 121439363 -75756069 - PB1D9 SINE Alu -7 142 11 1 1511 255 310 175 12 chr1 121439363 121439389 -75756043 - B4A SINE B4 -56 178 66 1 1511 657 304 41 0 chr1 121439792 121439986 -75755446 - ID_B1 SINE B4 -21 203 2 1 1511 213 211 0 0 chr1 121440928 121440966 -75754466 - PB1D7 SINE Alu -82 38 1 1 1511 1142 74 0 0 chr1 121440993 121441141 -75754291 + B1_Mus1 SINE Alu 1 148 0 1 1511 524 272 137 46 chr1 121441166 121441428 -75754004 - B4 SINE B4 -4 288 3 1 1511 288 0 0 0 chr1 121441876 121441908 -75753524 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1511 242 185 317 12 chr1 121442535 121442617 -75752815 - PB1D9 SINE Alu -11 109 3 1 1511 390 276 9 0 chr1 121442694 121442799 -75752633 + PB1D7 SINE Alu 2 107 -13 1 1511 736 139 16 0 chr1 121442888 121443010 -75752422 + B1_Mus2 SINE Alu 3 126 -21 1 1511 237 139 0 0 chr1 121443010 121443053 -75752379 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1511 1091 213 14 24 chr1 121446692 121446899 -75748533 - B3 SINE B2 -11 205 1 1 1511 674 125 9 0 chr1 121447364 121447476 -75747956 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 1 1511 582 211 8 66 chr1 121447493 121447615 -75747817 - B1_Mur4 SINE Alu -35 115 1 1 1511 21 36 0 0 chr1 121448151 121448179 -75747253 + AT_rich Low_complexity Low_complexity 1 28 0 1 1511 467 296 33 0 chr1 121448650 121448802 -75746630 + RSINE1 SINE B4 3 159 -6 1 1511 335 281 21 43 chr1 121448847 121448940 -75746492 + PB1D7 SINE Alu 4 94 -26 1 1511 301 287 56 65 chr1 121448940 121448951 -75746481 + ID_B1 SINE B4 85 187 -37 1 1511 242 138 29 147 chr1 121449172 121449240 -75746192 - B1_Mus2 SINE Alu -88 60 1 1 1511 485 277 38 8 chr1 121449463 121449594 -75745838 + MER5A DNA MER1_type 45 179 -10 1 1511 410 302 126 0 chr1 121449898 121450017 -75745415 - B1F SINE Alu -13 136 3 1 1511 874 231 25 25 chr1 121450042 121450242 -75745190 - B3 SINE B2 -1 215 16 1 1511 406 253 94 10 chr1 121450573 121450669 -75744763 - B4 SINE B4 -187 105 2 1 1511 837 161 41 14 chr1 121452068 121452213 -75743219 - B1_Mur2 SINE Alu 0 149 1 1 1511 889 195 7 7 chr1 121452608 121452758 -75742674 + B1_Mur4 SINE Alu 1 150 0 1 1511 234 0 0 0 chr1 121452769 121452795 -75742637 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1 1511 591 297 72 34 chr1 121453263 121453472 -75741960 + B4A SINE B4 1 217 -75 1 1511 225 0 0 0 chr1 121453769 121453794 -75741638 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1511 579 279 7 7 chr1 121453796 121453944 -75741488 - RSINE1 SINE B4 -16 149 2 1 1511 757 196 129 12 chr1 121453955 121454125 -75741307 - B3 SINE B2 -1 215 26 1 1511 247 249 152 31 chr1 121454205 121454396 -75741036 + L1M4b LINE L1 1206 1419 -5485 1 1511 257 312 62 16 chr1 121454548 121454740 -75740692 + L1M4b LINE L1 1613 1813 -5521 1 1511 245 255 156 32 chr1 121454801 121454955 -75740477 + L1M4b LINE L1 1999 2171 -4837 1 1511 322 276 62 16 chr1 121455052 121455181 -75740251 + L1_Mur3 LINE L1 696 830 -6898 1 1511 1502 211 70 22 chr1 121455584 121456251 -75739181 + L1_Mur3 LINE L1 904 1613 -4267 1 1511 1610 121 222 0 chr1 121456255 121456552 -75738880 - ORR1B1 LTR MaLR -8 386 24 1 1511 5322 235 77 199 chr1 121456567 121457077 -75738355 + L1_Mur3 LINE L1 1615 2056 -3821 1 1511 377 134 305 51 chr1 121457077 121457195 -75738237 - B2_Mm2 SINE B2 -1 194 47 1 1511 5322 235 77 199 chr1 121457195 121457263 -75738169 + L1_Mur3 LINE L1 2057 2116 -3761 1 1511 1410 68 22 6 chr1 121457263 121457441 -75737991 - B2_Mm2 SINE B2 -14 181 1 1 1511 5322 235 77 199 chr1 121457441 121458490 -75736942 + L1_Mur3 LINE L1 2117 3265 -2612 1 1511 3226 68 5 8 chr1 121458490 121458887 -75736545 + MTA_Mm LTR MaLR 1 396 0 1 1511 6533 90 112 75 chr1 121458887 121459946 -75735486 + MTA_Mm-int LTR MaLR 1 1098 0 1 1511 2678 56 61 6 chr1 121459951 121460312 -75735120 + MTA_Mm LTR MaLR 16 396 0 1 1511 6341 192 103 100 chr1 121460312 121461750 -75733682 + L1_Mur3 LINE L1 3268 4746 -1134 1 1511 1319 47 0 0 chr1 121461750 121461898 -75733534 + B1_Mus1 SINE Alu 1 148 0 1 1511 6341 181 109 75 chr1 121461898 121462241 -75733191 + L1_Mur3 LINE L1 4747 5105 -775 1 1511 4405 225 62 32 chr1 121462257 121463299 -75732133 + Lx7 LINE L1 6269 7354 -342 1 1511 309 51 0 0 chr1 121463299 121463338 -75732094 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1 1511 4405 225 62 32 chr1 121463338 121463394 -75732038 + Lx7 LINE L1 7355 7403 -293 1 1511 221 57 29 0 chr1 121463394 121463429 -75732003 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1511 4405 225 62 32 chr1 121463429 121463443 -75731989 + Lx7 LINE L1 7404 7415 -281 1 1511 341 246 8 30 chr1 121463463 121463597 -75731835 + Lx7 LINE L1 7565 7695 -1 1 1511 503 274 39 21 chr1 121463659 121463885 -75731547 + L1MEg LINE L1 1554 1882 -4596 1 1511 455 341 8 0 chr1 121465063 121465189 -75730243 - RSINE1 SINE B4 -24 141 15 1 1511 667 223 306 0 chr1 121465169 121465398 -75730034 + MTD LTR MaLR 110 408 -11 1 1511 958 247 100 13 chr1 121465408 121465757 -75729675 + MTD-int LTR MaLR 8 478 -780 1 1511 2267 199 2 14 chr1 121466172 121466585 -75728847 - MTC LTR MaLR -9 412 5 1 1511 356 284 73 9 chr1 121467438 121467548 -75727884 - PB1D10 SINE Alu 0 117 1 1 1511 212 349 0 88 chr1 121467755 121467846 -75727586 - PB1D7 SINE Alu -35 85 3 1 1511 576 215 92 122 chr1 121468096 121468292 -75727140 - B3 SINE B2 -26 190 1 1 1511 1067 122 0 20 chr1 121468317 121468468 -75726964 + B1_Mus1 SINE Alu 1 148 0 1 1511 460 223 27 64 chr1 121468477 121468587 -75726845 - B1_Mur1 SINE Alu -1 148 43 1 1511 853 240 102 0 chr1 121468605 121468801 -75726631 - B3 SINE B2 0 216 1 1 1511 1583 196 141 3 chr1 121468945 121469313 -75726119 + MTD LTR MaLR 1 419 0 1 1511 1004 151 0 6 chr1 121469486 121469666 -75725766 + GA-rich Low_complexity Low_complexity 2 180 0 1 1511 392 192 14 0 chr1 121469836 121469909 -75725523 + PB1D9 SINE Alu 47 120 0 1 1511 387 245 20 60 chr1 121469922 121470022 -75725410 + PB1D9 SINE Alu 1 96 -24 1 1511 369 0 0 0 chr1 121470022 121470063 -75725369 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1511 206 200 0 39 chr1 121470208 121470245 -75725187 + polypyrimidine Low_complexity Low_complexity 17 52 0 1 1511 1156 69 0 33 chr1 121470245 121470395 -75725037 - B1_Mus2 SINE Alu -2 145 1 1 1511 206 200 0 39 chr1 121470395 121470409 -75725023 + polypyrimidine Low_complexity Low_complexity 3 16 0 1 1511 330 372 0 34 chr1 121471847 121471965 -75723467 + B1F1 SINE Alu 17 130 -19 1 1511 812 293 135 41 chr1 121472026 121472293 -75723139 - B4A SINE B4 0 292 1 1 1511 189 338 118 26 chr1 121472398 121472550 -75722882 - L3 LINE CR1 -67 4422 4257 1 1511 533 233 64 57 chr1 121472733 121472874 -75722558 - RSINE1 SINE B4 -22 143 2 1 1511 765 195 94 0 chr1 121473068 121473196 -75722236 + B1_Mur3 SINE Alu 1 140 -9 1 1511 366 294 58 14 chr1 121473533 121473671 -75721761 + RMER15 LTR ERVL 421 564 -11 1 1511 606 209 94 73 chr1 121473918 121474109 -75721323 - B3A SINE B2 -1 197 3 1 1511 222 143 0 0 chr1 121474529 121474550 -75720882 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1511 1194 42 42 0 chr1 121474550 121474692 -75720740 - B1_Mus1 SINE Alu 0 148 1 1 1511 222 143 0 0 chr1 121474692 121474712 -75720720 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1511 272 330 47 85 chr1 121474949 121475078 -75720354 - B1F SINE Alu -12 137 14 1 1511 441 325 24 48 chr1 121475278 121475446 -75719986 + RSINE1 SINE B4 2 165 0 1 1511 579 275 82 146 chr1 121476014 121476147 -75719285 + MTEa LTR MaLR 40 173 -206 1 1511 383 270 277 22 chr1 121476147 121476378 -75719054 + B4 SINE B4 2 291 -1 1 1511 579 275 82 146 chr1 121476378 121476572 -75718860 + MTEa LTR MaLR 174 346 -33 1 1511 1090 117 7 0 chr1 121477066 121477211 -75718221 + B1_Mus2 SINE Alu 2 147 0 1 1511 571 221 125 0 chr1 121477601 121477737 -75717695 - RSINE1 SINE B4 -10 155 3 1 1511 989 193 34 48 chr1 121477836 121478028 -75717404 + B3 SINE B2 2 191 -25 1 1511 3115 82 22 0 chr1 121478028 121478440 -75716992 + BGLII LTR ERVK 1 421 0 1 1511 989 193 34 48 chr1 121478440 121478454 -75716978 + B3 SINE B2 192 205 -11 1 1511 984 76 0 22 chr1 121478764 121478819 -75716613 + B1_Mur4 SINE Alu 9 63 -87 1 1511 4410 55 12 0 chr1 121478819 121479325 -75716107 + RLTR1B LTR ERV1 1 512 0 1 1511 984 76 0 22 chr1 121479325 121479403 -75716029 + B1_Mur4 SINE Alu 64 139 -11 1 1511 198 0 0 0 chr1 121479403 121479425 -75716007 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1511 939 211 32 0 chr1 121479430 121479615 -75715817 + B3 SINE B2 1 191 -25 1 1511 327 104 0 0 chr1 121480032 121480080 -75715352 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1511 1304 98 21 37 chr1 121480380 121480571 -75714861 + B2_Mm2 SINE B2 2 189 -6 1 1511 199 276 208 30 chr1 121480870 121481038 -75714394 - L2a LINE L2 -86 3340 3143 1 1511 3758 241 94 16 chr1 121481038 121481094 -75714338 + Lx8 LINE L1 6262 6324 -1149 1 1511 231 36 0 0 chr1 121481094 121481122 -75714310 + (CCCCCT)n Simple_repeat Simple_repeat 6 33 0 1 1511 3758 241 94 16 chr1 121481122 121482070 -75713362 + Lx8 LINE L1 6325 7345 -128 1 1511 319 289 311 13 chr1 121482823 121483051 -75712381 + L1MD3 LINE L1 7564 7859 -136 1 1511 338 338 45 51 chr1 121483110 121483241 -75712191 - B4 SINE B4 -136 156 29 1 1511 2304 90 55 6 chr1 121483241 121483553 -75711879 + ORR1A2 LTR MaLR 1 327 0 1 1511 338 338 45 51 chr1 121483553 121483577 -75711855 - B4 SINE B4 -264 28 2 1 1511 408 283 206 51 chr1 121483845 121484098 -75711334 - B4 SINE B4 0 292 1 1 1511 359 264 232 25 chr1 121484100 121484337 -75711095 - L2a LINE L2 -1096 2323 2038 1 1511 2187 90 26 0 chr1 121484514 121484825 -75710607 - ORR1A2 LTR MaLR -8 319 1 1 1511 636 159 75 15 chr1 121484898 121485032 -75710400 - URR1A DNA MER1_type -4 222 81 1 1511 603 283 19 26 chr1 121485178 121485334 -75710098 + RSINE1 SINE B4 11 165 0 1 1511 504 257 19 9 chr1 121485360 121485451 -75709981 + B1F1 SINE Alu 1 92 -57 1 1511 769 118 73 15 chr1 121485451 121485588 -75709844 - URR1A DNA MER1_type 0 226 82 1 1511 337 159 16 0 chr1 121485611 121485674 -75709758 + B1_Mur4 SINE Alu 83 146 -4 1 1511 343 204 51 120 chr1 121485715 121485727 -75709705 + MT2B LTR ERVL 149 152 -449 1 1511 868 159 14 14 chr1 121485727 121485867 -75709565 + B1_Mur4 SINE Alu 1 140 -10 1 1511 960 65 8 0 chr1 121485861 121485985 -75709447 + B1_Mus2 SINE Alu 23 147 0 1 1511 559 265 25 62 chr1 121486062 121486231 -75709201 - ID_B1 SINE B4 -54 238 71 1 1511 1280 41 0 0 chr1 121487009 121487156 -75708276 - B1_Mus2 SINE Alu 0 147 1 1 1511 22 0 0 0 chr1 121487305 121487327 -75708105 + AT_rich Low_complexity Low_complexity 1 22 0 1 1511 478 264 76 28 chr1 121487592 121487736 -75707696 + RSINE1 SINE B4 3 153 -12 1 1511 463 224 143 0 chr1 121488593 121488691 -75706741 - B1F2 SINE Alu -37 112 1 1 1511 612 158 39 10 chr1 121489229 121489331 -75706101 - PB1D9 SINE Alu -13 107 3 1 1511 260 276 85 73 chr1 121489574 121489656 -75705776 - PB1 SINE Alu -9 118 34 1 1511 430 245 33 131 chr1 121489724 121489846 -75705586 - RSINE1 SINE B4 -47 118 9 1 1511 861 213 84 30 chr1 121490792 121490995 -75704437 + B3 SINE B2 3 216 0 1 1511 29 0 0 0 chr1 121491916 121491945 -75703487 + AT_rich Low_complexity Low_complexity 1 29 0 1 1511 1246 61 0 0 chr1 121494523 121494670 -75700762 - B1_Mus1 SINE Alu 0 148 2 1 1511 874 168 20 7 chr1 121495806 121495956 -75699476 + RMER20A LTR ERVK 1 152 -364 1 1511 567 273 191 42 chr1 121495969 121496394 -75699038 + RMER13A LTR ERVK 183 670 -190 1 1511 379 214 223 0 chr1 121497354 121497466 -75697966 - B1_Mur1 SINE Alu 0 149 13 1 1511 287 252 159 51 chr1 121497466 121497492 -75697940 - ID_B1 SINE B4 0 224 72 1 1511 934 163 228 0 chr1 121497790 121497974 -75697458 - URR1A DNA MER1_type 0 226 1 1 1511 622 236 59 35 chr1 121498066 121498268 -75697164 - B3 SINE B2 0 216 10 1 1511 317 273 13 0 chr1 121498619 121498696 -75696736 + ID4 SINE ID 2 79 -4 1 1511 225 295 39 0 chr1 121499301 121499379 -75696053 + RSINE1 SINE B4 85 165 0 1 1511 389 89 0 0 chr1 121499507 121499563 -75695869 - Lx9 LINE L1 -7 7637 7582 1 1511 1021 92 72 0 chr1 121500001 121500153 -75695279 + B2_Mm1t SINE B2 23 185 -8 1 1511 243 0 0 0 chr1 121500164 121500191 -75695241 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1511 281 197 0 15 chr1 121500353 121500420 -75695012 + (TTA)n Simple_repeat Simple_repeat 3 68 0 3 1511 323 254 163 41 chr1 121500422 121500434 -75694998 - ID_B1 SINE B4 -7 217 82 4 1511 468 200 9 83 chr1 121500434 121500543 -75694889 - B1_Mur3 SINE Alu -48 101 1 5 1511 247 260 21 10 chr1 121500598 121500695 -75694737 + L1M4 LINE L1 2921 3018 -3128 6 1511 1574 42 5 0 chr1 121500807 121500998 -75694434 - B2_Mm1t SINE B2 0 193 2 7 1511 313 243 28 186 chr1 121501048 121501225 -75694207 + B1F1 SINE Alu 1 149 0 8 1511 566 229 48 87 chr1 121502026 121502232 -75693200 - B3A SINE B2 0 198 1 9 1511 419 284 104 12 chr1 121502266 121502430 -75693002 - B3A SINE B2 -18 180 2 1 1511 510 342 32 19 chr1 121502472 121502627 -75692805 - RSINE1 SINE B4 -6 159 3 1 1511 195 94 0 0 chr1 121502922 121502936 -75692496 + (T)n Simple_repeat Simple_repeat 1 14 0 1 1511 1170 61 0 7 chr1 121502936 121503085 -75692347 - B1_Mus1 SINE Alu 0 148 1 1 1511 195 94 0 0 chr1 121503085 121503102 -75692330 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1511 2687 47 3 20 chr1 121503111 121503458 -75691974 - L1_Mus1 LINE L1 0 6567 6227 1 1511 261 0 0 0 chr1 121503636 121503665 -75691767 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 188 768 199 0 52 chr1 121503665 121503819 -75691613 - B1_Mur3 SINE Alu -3 146 1 1 1512 317 287 170 35 chr1 121503851 121503992 -75691440 - RSINE1 SINE B4 -2 163 4 1 1512 450 261 96 64 chr1 121504025 121504213 -75691219 + B3A SINE B2 1 194 -4 1 1512 393 232 0 12 chr1 121505029 121505112 -75690320 - ID4_ SINE ID -1 82 1 2 1512 29 28 0 0 chr1 121505496 121505532 -75689900 + AT_rich Low_complexity Low_complexity 1 36 0 2 1512 187 357 10 39 chr1 121505601 121505703 -75689729 + MIRm SINE MIR 95 193 -83 2 1512 284 255 152 10 chr1 121505949 121506048 -75689384 + B1F1 SINE Alu 1 113 -36 2 1512 380 269 68 77 chr1 121506068 121506185 -75689247 + B3A SINE B2 1 116 -100 2 1512 330 291 70 56 chr1 121506293 121506435 -75688997 + B4A SINE B4 149 292 0 2 1512 416 175 94 43 chr1 121506501 121506630 -75688802 + B1_Mus2 SINE Alu 2 149 0 2 1512 352 266 148 0 chr1 121506705 121506833 -75688599 + B1F2 SINE Alu 1 147 -2 2 1512 1802 167 116 3 chr1 121506951 121507305 -75688127 + ORR1B1 LTR MaLR 1 394 0 2 1512 832 270 9 49 chr1 121507369 121507594 -75687838 + B3 SINE B2 1 216 0 2 1512 332 279 11 65 chr1 121507611 121507703 -75687729 + ID_B1 SINE B4 82 168 -56 3 1512 1696 201 235 12 chr1 121507693 121508187 -75687245 + RMER20B LTR ERVK 10 613 -14 3 1512 279 246 15 15 chr1 121508187 121508253 -75687179 + RMER20B LTR ERVK 537 602 -25 3 1512 399 245 14 27 chr1 121508257 121508404 -75687028 + Lx9 LINE L1 4973 5117 -730 3 1512 1294 142 19 0 chr1 121508414 121508619 -75686813 + RMER6D LTR ERVK 1 209 -511 3 1512 1458 170 57 14 chr1 121508593 121508873 -75686559 + RMER6D LTR ERVK 429 720 0 3 1512 1016 224 99 87 chr1 121508874 121509359 -75686073 + Lx9 LINE L1 5135 5625 -222 3 1512 413 194 180 74 chr1 121509346 121509535 -75685897 + Lx9 LINE L1 5766 5974 -1670 3 1512 1389 313 24 26 chr1 121509700 121510244 -75685188 + Lx9 LINE L1 6358 6900 -744 3 1512 434 234 43 0 chr1 121510319 121510413 -75685019 + B1_Mus1 SINE Alu 40 137 -11 3 1512 400 298 72 7 chr1 121510415 121510567 -75684865 - RSINE1 SINE B4 0 165 4 3 1512 531 190 21 131 chr1 121511524 121511669 -75683763 - B1_Mur1 SINE Alu 0 149 21 3 1512 21 0 0 0 chr1 121513147 121513168 -75682264 + AT_rich Low_complexity Low_complexity 1 21 0 3 1512 475 218 63 9 chr1 121513431 121513542 -75681890 - PB1D9 SINE Alu -1 119 3 3 1512 759 282 15 44 chr1 121513695 121513899 -75681533 - B3A SINE B2 0 198 1 4 1512 1401 211 93 6 chr1 121514439 121514772 -75680660 + ORR1D1 LTR MaLR 5 366 -8 4 1512 23 54 0 0 chr1 121514803 121514840 -75680592 + AT_rich Low_complexity Low_complexity 1 37 0 4 1512 625 168 230 20 chr1 121514917 121515069 -75680363 - B2_Mm2 SINE B2 -10 185 2 4 1512 30 0 0 0 chr1 121515104 121515134 -75680298 + AT_rich Low_complexity Low_complexity 1 30 0 4 1512 414 0 0 0 chr1 121515873 121515919 -75679513 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1512 991 251 10 0 chr1 121516298 121516501 -75678931 + B3 SINE B2 7 211 -5 4 1512 538 269 0 36 chr1 121516924 121517063 -75678369 - B4A SINE B4 -8 284 151 4 1512 480 270 9 0 chr1 121517381 121517496 -75677936 - PB1D9 SINE Alu 0 120 5 4 1512 922 138 14 0 chr1 121517517 121517662 -75677770 - B1_Mus1 SINE Alu -1 147 1 4 1512 766 248 0 0 chr1 121518169 121518306 -75677126 - B1F SINE Alu 0 149 13 5 1512 26 64 0 0 chr1 121519072 121519119 -75676313 + AT_rich Low_complexity Low_complexity 1 47 0 5 1512 618 269 26 20 chr1 121519210 121519362 -75676070 - B3A SINE B2 -42 156 4 5 1512 781 246 75 0 chr1 121519401 121519600 -75675832 + B3 SINE B2 3 216 0 5 1512 575 154 140 91 chr1 121519867 121520010 -75675422 + B1_Mur4 SINE Alu 1 150 0 5 1512 269 100 0 20 chr1 121520010 121520061 -75675371 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 5 1512 220 293 52 42 chr1 121520267 121520363 -75675069 + B1_Mm SINE Alu 1 97 -50 5 1512 288 239 0 78 chr1 121521503 121521580 -75673852 - ID4 SINE ID -2 81 11 5 1512 1392 58 11 0 chr1 121522121 121522295 -75673137 + B2_Mm2 SINE B2 2 177 -18 5 1512 518 141 232 0 chr1 121522526 121522625 -75672807 - B1_Mur2 SINE Alu -26 123 2 5 1512 954 206 58 19 chr1 121522745 121522953 -75672479 + B3 SINE B2 1 216 0 6 1512 1179 80 0 0 chr1 121522978 121523141 -75672291 - B2_Mm2 SINE B2 -30 165 3 6 1512 574 260 49 55 chr1 121523167 121523350 -75672082 + B3A SINE B2 17 198 0 6 1512 348 177 16 16 chr1 121524275 121524338 -75671094 - B3 SINE B2 -27 189 127 6 1512 656 272 122 44 chr1 121524535 121524929 -75670503 + L1MB7 LINE L1 3023 3470 -2673 6 1512 736 246 54 10 chr1 121524929 121525134 -75670298 + B3 SINE B2 3 216 0 6 1512 656 272 122 44 chr1 121525134 121525446 -75669986 + L1MB7 LINE L1 3471 3784 -2359 6 1512 299 239 20 102 chr1 121525448 121525546 -75669886 + B4A SINE B4 1 90 -202 6 1512 693 281 121 45 chr1 121525824 121526763 -75668669 + L1MB7 LINE L1 5149 6165 -19 6 1512 270 336 100 0 chr1 121527108 121527218 -75668214 + Tigger5 DNA MER2_type 103 223 -2183 6 1512 521 238 167 53 chr1 121527351 121527692 -75667740 + L1MC4 LINE L1 7484 7863 -179 6 1512 305 230 10 121 chr1 121527811 121527910 -75667522 + MT2B LTR ERVL 173 260 -341 6 1512 634 238 0 45 chr1 121527823 121527955 -75667477 + B1_Mur1 SINE Alu 21 146 -3 7 1512 21 57 0 0 chr1 121527986 121528021 -75667411 + AT_rich Low_complexity Low_complexity 1 35 0 7 1512 243 0 0 0 chr1 121528246 121528273 -75667159 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1512 224 0 65 0 chr1 121528286 121528317 -75667115 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 7 1512 764 209 105 21 chr1 121528738 121528929 -75666503 - B3 SINE B2 -7 209 3 7 1512 782 234 21 0 chr1 121529001 121529178 -75666254 + B3 SINE B2 5 197 -1 7 1512 946 70 86 0 chr1 121529303 121529431 -75666001 - B1_Mus2 SINE Alu -8 139 1 7 1512 268 310 87 39 chr1 121529868 121529972 -75665460 + PB1D10 SINE Alu 7 115 -2 7 1512 1256 91 36 36 chr1 121530391 121530585 -75664847 - B2_Mm2 SINE B2 0 195 2 7 1512 393 110 0 0 chr1 121531741 121531814 -75663618 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1512 271 316 21 21 chr1 121532096 121532193 -75663239 - L2c LINE L2 -9 3378 3282 8 1512 832 82 104 0 chr1 121532422 121532556 -75662876 - B2_Mm2 SINE B2 -5 190 43 8 1512 31 0 0 0 chr1 121532567 121532598 -75662834 + AT_rich Low_complexity Low_complexity 1 31 0 8 1512 27 73 0 0 chr1 121532637 121532692 -75662740 + AT_rich Low_complexity Low_complexity 1 55 0 8 1512 1091 260 85 27 chr1 121533574 121534021 -75661411 - Lx7 LINE L1 -377 7319 6847 8 1512 288 0 0 0 chr1 121534022 121534054 -75661378 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1512 1141 163 187 23 chr1 121534080 121534337 -75661095 + MTD LTR MaLR 113 411 -8 8 1512 835 222 25 92 chr1 121534538 121534776 -75660656 + RLTR20B3 LTR ERVK 268 523 -54 8 1512 1078 139 0 17 chr1 121534793 121534969 -75660463 - B2_Mm2 SINE B2 -21 174 2 8 1512 1166 48 14 0 chr1 121535593 121535738 -75659694 + B1_Mm SINE Alu 1 147 0 8 1512 644 224 34 20 chr1 121535921 121536067 -75659365 + B1_Mur1 SINE Alu 2 149 0 9 1512 385 246 53 79 chr1 121536083 121536273 -75659159 - L1MB8 LINE L1 -115 6063 5879 9 1512 707 155 0 30 chr1 121536321 121536454 -75658978 - B3 SINE B2 -86 130 2 9 1512 400 269 206 25 chr1 121536454 121536845 -75658587 - L1MB5 LINE L1 -281 5893 5429 9 1512 1006 251 114 30 chr1 121536970 121537295 -75658137 - L1MB5 LINE L1 -800 5346 4990 9 1512 1465 17 69 0 chr1 121537295 121537470 -75657962 - B2_Mm1a SINE B2 -6 187 1 9 1512 1006 251 114 30 chr1 121537470 121537616 -75657816 - L1MB5 LINE L1 -1157 4989 4835 9 1512 23 0 0 0 chr1 121538026 121538049 -75657383 + AT_rich Low_complexity Low_complexity 1 23 0 9 1512 318 219 59 50 chr1 121538219 121538320 -75657112 + PB1D10 SINE Alu 5 106 -11 9 1512 360 0 0 0 chr1 121538322 121538362 -75657070 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 9 1512 306 250 38 57 chr1 121538672 121538778 -75656654 + PB1D10 SINE Alu 1 104 -13 9 1512 222 62 0 0 chr1 121538798 121538830 -75656602 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1512 356 259 75 100 chr1 121541239 121541359 -75654073 + B1F SINE Alu 5 121 -28 1 1512 260 346 66 44 chr1 121541359 121541375 -75654057 + ID_B1 SINE B4 86 224 0 1 1512 606 200 66 15 chr1 121541558 121541695 -75653737 + ID_B1 SINE B4 81 224 0 1 1512 1177 37 0 0 chr1 121541733 121541869 -75653563 + B1_Mus2 SINE Alu 2 137 -10 1 1512 279 0 0 0 chr1 121541869 121541900 -75653532 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1512 279 93 52 26 chr1 121542063 121542140 -75653292 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 1 1512 324 48 0 0 chr1 121542142 121542184 -75653248 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1512 871 141 7 7 chr1 121542386 121542529 -75652903 + B1_Mus2 SINE Alu 1 143 -4 1 1512 703 183 25 0 chr1 121542629 121542749 -75652683 + B1_Mur1 SINE Alu 22 144 -5 1 1512 241 236 0 0 chr1 121543599 121543671 -75651761 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1512 331 119 30 0 chr1 121543786 121543853 -75651579 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1512 207 69 0 0 chr1 121543853 121543882 -75651550 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1512 207 0 0 0 chr1 121543923 121543946 -75651486 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 1 1512 217 226 45 75 chr1 121544207 121544274 -75651158 - ID4 SINE ID -5 78 14 1 1512 22 0 0 0 chr1 121544277 121544299 -75651133 + AT_rich Low_complexity Low_complexity 1 22 0 1 1512 274 109 18 35 chr1 121544534 121544591 -75650841 + A-rich Low_complexity Low_complexity 3 58 0 1 1512 234 150 0 48 chr1 121545698 121545740 -75649692 + B1_Mus2 SINE Alu 20 59 -88 1 1512 553 153 40 20 chr1 121545756 121545856 -75649576 + B1_Mur1 SINE Alu 42 143 -6 1 1512 344 285 162 74 chr1 121545869 121546017 -75649415 - RSINE1 SINE B4 0 165 5 1 1512 338 288 0 0 chr1 121546077 121546157 -75649275 + ID4_ SINE ID 2 81 -2 1 1512 266 227 132 33 chr1 121546433 121546524 -75648908 - L2a LINE L2 0 3426 3327 1 1512 236 222 110 110 chr1 121546528 121546619 -75648813 + B1F SINE Alu 25 147 -2 1 1512 295 286 0 0 chr1 121546639 121546732 -75648700 + PB1 SINE Alu 48 220 -91 1 1512 426 284 39 0 chr1 121547496 121547598 -75647834 + RSINE1 SINE B4 3 108 -57 1 1512 944 149 77 0 chr1 121547838 121548006 -75647426 - B2_Mm2 SINE B2 -14 181 1 1 1512 443 325 9 0 chr1 121548017 121548131 -75647301 - PB1 SINE Alu -7 120 6 1 1512 536 216 9 29 chr1 121548193 121548298 -75647134 + PB1D9 SINE Alu 1 103 -17 1 1512 221 0 35 0 chr1 121548302 121548331 -75647101 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1512 868 275 53 23 chr1 121548516 121548780 -75646652 + B4A SINE B4 1 272 -20 1 1512 255 308 55 18 chr1 121556695 121556804 -75638628 + L1MC5 LINE L1 5529 5641 -2241 1 1512 245 281 82 35 chr1 121556887 121556898 -75638534 - ID_B1 SINE B4 -34 190 102 1 1512 371 203 81 0 chr1 121556898 121556972 -75638460 - B1_Mur2 SINE Alu -49 100 21 1 1512 309 256 0 103 chr1 121557041 121557128 -75638304 + B1F2 SINE Alu 38 115 -2 1 1512 180 97 0 0 chr1 121557136 121557167 -75638265 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1512 458 310 150 43 chr1 121557199 121557452 -75637980 + B4A SINE B4 2 281 -11 1 1512 27 0 0 0 chr1 121557551 121557578 -75637854 + AT_rich Low_complexity Low_complexity 1 27 0 1 1512 720 207 24 35 chr1 121557702 121557892 -75637540 - B3 SINE B2 -5 190 1 1 1512 379 277 102 49 chr1 121558306 121558572 -75636860 + L1MC5 LINE L1 6668 6947 -1014 1 1512 719 226 0 0 chr1 121558616 121558749 -75636683 - B1_Mur2 SINE Alu -16 133 1 1 1512 262 258 31 31 chr1 121558834 121558930 -75636502 + BC1_Mm scRNA scRNA 2 97 -55 1 1512 835 226 97 0 chr1 121558987 121559182 -75636250 + B3 SINE B2 3 216 0 1 1512 363 326 43 14 chr1 121559182 121559322 -75636110 + MTC LTR MaLR 99 242 -179 1 1512 22 56 0 0 chr1 121559644 121559680 -75635752 + AT_rich Low_complexity Low_complexity 1 36 0 1 1512 1038 259 89 67 chr1 121559754 121560293 -75635139 + L1MB2 LINE L1 5618 6168 -3 1 1512 1162 208 101 74 chr1 121560523 121560726 -75634706 + L1_Rod LINE L1 890 1120 -6488 1 1512 942 87 238 7 chr1 121560726 121560877 -75634555 + B2_Mm2 SINE B2 1 186 -9 1 1512 1162 208 101 74 chr1 121560877 121561108 -75634324 + L1_Rod LINE L1 1121 1336 -6272 1 1512 228 274 0 31 chr1 121561121 121561185 -75634247 + GA-rich Low_complexity Low_complexity 4 65 0 1 1512 1493 226 186 74 chr1 121561189 121561335 -75634097 + L1_Rod LINE L1 1722 1844 -4003 1 1512 1262 75 40 0 chr1 121561335 121561508 -75633924 - B2_Mm1t SINE B2 -13 180 1 1 1512 1493 226 186 74 chr1 121561508 121562053 -75633379 + L1_Rod LINE L1 1845 2491 -3356 1 1512 4523 62 16 23 chr1 121562054 121562593 -75632839 + L1_Mus3 LINE L1 5454 6011 -627 1 1512 994 64 42 21 chr1 121562593 121562737 -75632695 + B1_Mm SINE Alu 1 147 0 1 1512 4523 53 7 30 chr1 121562737 121562917 -75632515 + L1_Mus3 LINE L1 6012 6176 -462 1 1512 597 73 0 10 chr1 121562917 121563014 -75632418 + L1_Mus3 LINE L1 6538 6633 -5 1 1512 517 279 25 19 chr1 121563651 121563812 -75631620 - MER58B DNA MER1_type -8 333 172 1 1512 286 242 62 21 chr1 121563890 121563987 -75631445 + PB1 SINE Alu 14 114 -13 1 1512 860 176 43 57 chr1 121564639 121564850 -75630582 - B3 SINE B2 -7 209 2 1 1512 216 0 0 0 chr1 121565215 121565239 -75630193 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1512 1110 60 0 0 chr1 121565239 121565373 -75630059 - B1_Mm SINE Alu -13 134 1 1 1512 1093 295 59 89 chr1 121565373 121565448 -75629984 - L1MA4 LINE L1 -446 6556 6459 1 1512 567 0 0 0 chr1 121565448 121565511 -75629921 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 1512 1093 296 85 87 chr1 121565511 121566354 -75629078 - L1MA4 LINE L1 -544 6458 5536 1 1512 1207 257 108 0 chr1 121566387 121566710 -75628722 + MTD LTR MaLR 62 419 0 1 1512 922 255 49 99 chr1 121566710 121567054 -75628378 + MTD-int LTR MaLR 1 327 -931 1 1512 1064 298 103 35 chr1 121567066 121567219 -75628213 - L1MA4 LINE L1 -1287 5558 5373 1 1512 209 33 0 32 chr1 121567219 121567250 -75628182 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 1512 1064 298 103 35 chr1 121567250 121567914 -75627518 - L1MA4 LINE L1 -1473 5372 4687 1 1512 185 132 26 0 chr1 121567947 121567985 -75627447 + CT-rich Low_complexity Low_complexity 2 40 0 1 1512 247 330 132 30 chr1 121568179 121568376 -75627056 - L1MA4 LINE L1 -4242 2607 2391 1 1512 918 248 15 0 chr1 121568414 121568612 -75626820 - B3 SINE B2 -13 203 3 1 1512 264 233 27 14 chr1 121568655 121568729 -75626703 - PB1D9 SINE Alu -1 119 45 1 1512 1614 31 0 20 chr1 121568767 121568964 -75626468 - B2_Mm1t SINE B2 0 193 1 1 1512 299 309 51 17 chr1 121568965 121569143 -75626289 - L1MA4 LINE L1 -4499 2350 2167 1 1512 1930 37 4 31 chr1 121569480 121569734 -75625698 - L1Md_F3 LINE L1 -14 6570 6324 1 1512 180 0 0 0 chr1 121569847 121569867 -75625565 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1512 945 63 0 0 chr1 121569869 121569996 -75625436 - B1_Mm SINE Alu -4 143 17 1 1512 1214 201 201 0 chr1 121570882 121571205 -75624227 + RMER1B Other Other 678 1065 -1 1 1512 1084 73 0 0 chr1 121571244 121571381 -75624051 + B1_Mus2 SINE Alu 1 137 -10 1 1512 216 0 0 0 chr1 121571381 121571405 -75624027 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1512 232 204 53 53 chr1 121571537 121571594 -75623838 + PB1D10 SINE Alu 54 110 -7 1 1512 359 198 96 29 chr1 121571778 121571882 -75623550 + MLT1A1 LTR MaLR 290 400 -8 1 1512 805 210 0 7 chr1 121572515 121572659 -75622773 - B1_Mur4 SINE Alu -6 144 2 1 1512 437 312 6 67 chr1 121572867 121573032 -75622400 + RSINE1 SINE B4 11 165 0 1 1512 25 0 0 0 chr1 121573087 121573112 -75622320 + AT_rich Low_complexity Low_complexity 1 25 0 1 1512 1581 151 206 46 chr1 121573403 121573820 -75621612 - RLTR28 LTR ERVL 0 524 41 1 1512 353 75 19 0 chr1 121573910 121573963 -75621469 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1 1512 802 85 17 8 chr1 121573965 121574083 -75621349 - PB1D9 SINE Alu 0 120 2 1 1512 774 312 43 33 chr1 121574727 121574987 -75620445 - B4A SINE B4 -2 290 33 1 1512 1205 144 5 0 chr1 121574987 121575181 -75620251 - B2_Mm2 SINE B2 0 195 1 1 1512 516 339 46 93 chr1 121575181 121575222 -75620210 - B4 SINE B4 -255 37 3 1 1512 730 294 68 54 chr1 121575637 121575917 -75619515 - B4A SINE B4 -2 290 7 1 1512 560 291 58 63 chr1 121576044 121576392 -75619040 - L1MB8 LINE L1 -36 6142 5797 1 1512 262 128 0 0 chr1 121576931 121576970 -75618462 - B1F SINE Alu 0 149 111 1 1512 227 291 126 102 chr1 121577818 121578143 -75617289 + MER46C DNA MER2_type 6 338 0 1 1512 822 303 112 42 chr1 121578446 121578856 -75616576 - MER82 DNA MER2_type -45 608 170 1 1512 188 320 24 82 chr1 121578994 121579079 -75616353 - L4 LINE RTE -191 1838 1759 1 1512 28 29 0 0 chr1 121579215 121579250 -75616182 + AT_rich Low_complexity Low_complexity 1 35 0 1 1512 269 355 40 0 chr1 121579828 121579904 -75615528 - Charlie12 DNA MER1_type -2794 79 1 1 1512 319 290 14 0 chr1 121579836 121579905 -75615527 + RMER30 DNA MER1_type 133 202 0 1 1512 670 234 0 0 chr1 121579967 121580091 -75615341 + B1_Mus1 SINE Alu 2 125 -23 1 1512 1290 102 5 36 chr1 121580663 121580856 -75614576 + B2_Mm2 SINE B2 2 188 -7 1 1512 680 253 19 19 chr1 121581456 121581617 -75613815 + B3A SINE B2 20 180 -18 1 1512 396 55 0 0 chr1 121581658 121581713 -75613719 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 1 1512 870 279 10 0 chr1 121582050 121582254 -75613178 - B3 SINE B2 -10 206 1 1 1512 1455 68 5 0 chr1 121582439 121582630 -75612802 + B2_Mm1t SINE B2 1 192 -1 1 1512 221 306 108 32 chr1 121582728 121582921 -75612511 + MIR SINE MIR 20 227 -35 1 1512 198 0 0 0 chr1 121583312 121583334 -75612098 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1512 1161 62 0 0 chr1 121583334 121583479 -75611953 - B1_Mus1 SINE Alu -2 146 2 1 1512 489 17 0 0 chr1 121584540 121584598 -75610834 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1512 523 293 64 0 chr1 121584757 121584945 -75610487 + Tigger6b DNA MER2_type 1 200 -1397 1 1512 633 202 15 23 chr1 121584945 121585077 -75610355 + B3 SINE B2 4 134 -82 1 1512 265 293 69 0 chr1 121585124 121585182 -75610250 + Tigger6b DNA MER2_type 1536 1597 0 1 1512 668 12 0 0 chr1 121586035 121586165 -75609267 - L1Md_T LINE L1 0 6582 6498 1 1512 675 138 16 24 chr1 121586216 121586342 -75609090 + B1_Mur4 SINE Alu 25 149 -1 2 1512 791 157 36 22 chr1 121586888 121587025 -75608407 + B1_Mur4 SINE Alu 3 141 -9 2 1512 502 260 81 43 chr1 121587359 121587520 -75607912 - B3 SINE B2 0 216 50 2 1512 362 282 22 80 chr1 121587586 121587725 -75607707 + B3 SINE B2 1 191 -25 2 1512 744 265 51 5 chr1 121587756 121587953 -75607479 + B3 SINE B2 1 206 -10 2 1512 546 229 8 71 chr1 121587997 121588124 -75607308 - B1_Mur1 SINE Alu -29 120 2 2 1512 310 308 245 0 chr1 121588600 121588931 -75606501 + L2 LINE L2 1904 2315 -1104 2 1512 3261 190 91 106 chr1 121589737 121590779 -75604653 + Lx9 LINE L1 6611 7637 -7 2 1512 722 267 156 37 chr1 121591390 121591808 -75603624 - L1MA5A LINE L1 -359 5938 5412 2 1512 625 149 156 8 chr1 121591808 121591930 -75603502 - B1_Mus2 SINE Alu -7 140 1 2 1512 575 320 99 55 chr1 121591930 121591946 -75603486 - L1MA5A LINE L1 -436 5411 5397 2 1512 1104 68 0 0 chr1 121591946 121592092 -75603340 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 2 1512 1078 92 0 0 chr1 121592093 121592234 -75603198 - B1_Mus1 SINE Alu -4 144 4 2 1512 888 309 50 16 chr1 121592234 121592761 -75602671 - L1MA5A LINE L1 -451 5396 4858 2 1512 713 191 0 30 chr1 121592793 121592928 -75602504 - B1_Mur4 SINE Alu 0 150 20 2 1512 595 251 129 16 chr1 121592972 121593158 -75602274 - B3 SINE B2 -5 211 5 2 1512 254 357 20 10 chr1 121593408 121593507 -75601925 + MLT1I LTR MaLR 86 185 -226 2 1512 357 216 77 39 chr1 121593874 121594004 -75601428 + L1_Mur1 LINE L1 667 801 -6183 2 1512 314 122 11 22 chr1 121594096 121594188 -75601244 + L1_Mur1 LINE L1 831 894 -6090 2 1512 1782 119 0 4 chr1 121594192 121594470 -75600962 + L1_Mur1 LINE L1 2759 3035 -2851 2 1512 1103 120 6 6 chr1 121594465 121594633 -75600799 + Lx3C LINE L1 6240 6407 -569 2 1512 1901 139 53 6 chr1 121594633 121594972 -75600460 + Lx3C LINE L1 6621 6975 -1 2 1512 195 184 0 0 chr1 121594977 121595015 -75600417 + A-rich Low_complexity Low_complexity 1 38 0 2 1512 559 279 7 14 chr1 121595075 121595212 -75600220 + ID_B1 SINE B4 82 218 -6 2 1512 213 39 0 0 chr1 121595212 121595238 -75600194 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1512 297 349 18 9 chr1 121595485 121595595 -75599837 - RSINE1 SINE B4 -50 115 5 2 1512 224 225 0 0 chr1 121595703 121595743 -75599689 + polypurine Low_complexity Low_complexity 3 42 0 2 1512 3142 38 8 5 chr1 121595952 121596347 -75599085 + MTA_Mm LTR MaLR 1 396 0 2 1512 434 381 44 69 chr1 121597429 121597790 -75597642 + ORR1E LTR MaLR 3 354 -5 2 1512 835 110 0 0 chr1 121598031 121598149 -75597283 - B2_Mm2 SINE B2 -77 118 1 2 1512 222 258 32 0 chr1 121598204 121598266 -75597166 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 2 1512 324 0 0 0 chr1 121598296 121598332 -75597100 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1512 1124 75 0 0 chr1 121598332 121598478 -75596954 - B1_Mm SINE Alu 0 147 2 2 1512 6474 168 73 33 chr1 121598653 121598790 -75596642 + Lx5 LINE L1 5651 5782 -1268 2 1512 588 29 0 0 chr1 121598790 121598860 -75596572 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1512 6474 168 73 33 chr1 121598860 121600067 -75595365 + Lx5 LINE L1 5783 7048 -2 2 1512 3130 49 15 3 chr1 121600153 121600544 -75594888 + MTA_Mm LTR MaLR 1 396 0 2 1512 8803 40 7 7 chr1 121600544 121601641 -75593791 + MTA_Mm-int LTR MaLR 1 1097 -1 2 1512 3321 38 2 2 chr1 121601642 121602038 -75593394 + MTA_Mm LTR MaLR 1 396 0 2 1512 276 250 46 92 chr1 121602220 121602330 -75593102 + PB1D9 SINE Alu 2 120 0 2 1512 695 80 10 0 chr1 121602944 121603044 -75592388 - B1_Mus2 SINE Alu 0 147 47 2 1512 273 188 141 28 chr1 121602986 121603057 -75592375 - RLTR25B LTR ERVK -519 509 431 2 1512 415 336 42 0 chr1 121604016 121604159 -75591273 + RSINE1 SINE B4 2 150 -15 2 1512 545 294 5 85 chr1 121605010 121605222 -75590210 - B3A SINE B2 0 198 4 2 1512 494 345 70 27 chr1 121605741 121606000 -75589432 + Lx8 LINE L1 7172 7441 -32 2 1512 3003 57 5 0 chr1 121606029 121606413 -75589019 + L1_Mus2 LINE L1 6181 6566 0 2 1512 23 54 0 0 chr1 121606594 121606631 -75588801 + AT_rich Low_complexity Low_complexity 1 37 0 2 1512 8425 85 2 1 chr1 121607046 121608960 -75586472 + L1_Mus1 LINE L1 4692 6567 0 2 1512 530 233 35 16 chr1 121608970 121609115 -75586317 + B3 SINE B2 34 186 -9 2 1512 769 182 14 0 chr1 121610185 121610328 -75585104 + B1_Mus1 SINE Alu 3 147 -1 2 1512 227 296 84 0 chr1 121610466 121610537 -75584895 + ID4 SINE ID 6 82 -1 2 1512 207 0 0 0 chr1 121610570 121610593 -75584839 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1512 363 60 0 0 chr1 121610919 121610969 -75584463 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1512 184 250 0 0 chr1 121611434 121611470 -75583962 + L2 LINE L2 2706 2741 -678 2 1512 481 304 141 0 chr1 121611894 121612078 -75583354 - B3 SINE B2 -6 210 1 2 1512 1390 60 21 16 chr1 121612120 121612306 -75583126 + B2_Mm2 SINE B2 1 187 -8 2 1512 463 255 21 31 chr1 121612320 121612417 -75583015 + RSINE1 SINE B4 3 98 -67 2 1512 306 331 31 31 chr1 121614288 121614416 -75581016 + LTR33A LTR ERVL 393 520 0 2 1512 1092 57 35 0 chr1 121614567 121614708 -75580724 + B1_Mus2 SINE Alu 2 147 0 2 1512 24 0 0 0 chr1 121614708 121614732 -75580700 + AT_rich Low_complexity Low_complexity 1 24 0 2 1512 805 166 206 0 chr1 121614942 121615117 -75580315 - B3 SINE B2 -3 213 3 2 1512 30 45 0 0 chr1 121615550 121615594 -75579838 + AT_rich Low_complexity Low_complexity 1 44 0 2 1512 1364 190 21 44 chr1 121615657 121615942 -75579490 + Lx6 LINE L1 5693 5965 -1495 2 1512 905 152 181 10 chr1 121615942 121616135 -75579297 - URR1A DNA MER1_type 0 226 1 2 1512 1364 185 22 44 chr1 121616135 121616184 -75579248 + Lx6 LINE L1 5966 6013 -1447 2 1512 628 45 11 11 chr1 121616250 121616339 -75579093 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 2 1512 588 212 0 25 chr1 121616367 121616488 -75578944 - PB1D9 SINE Alu 0 120 3 2 1512 292 207 330 11 chr1 121616570 121616658 -75578774 - B3 SINE B2 -100 116 1 2 1512 360 175 0 0 chr1 121616916 121616973 -75578459 + B1_Mur4 SINE Alu 1 57 -93 2 1512 268 250 0 0 chr1 121616925 121616981 -75578451 + ID_B1 SINE B4 90 145 -79 2 1512 417 295 54 1 chr1 121617114 121617298 -75578134 + L1MA6 LINE L1 6004 6197 -103 2 1512 617 267 74 35 chr1 121617396 121617571 -75577861 + B3 SINE B2 1 183 -33 2 1512 239 71 24 0 chr1 121617571 121617613 -75577819 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1512 617 267 74 35 chr1 121617613 121617639 -75577793 + B3 SINE B2 184 210 -6 2 1512 810 269 0 27 chr1 121618170 121618357 -75577075 - B3 SINE B2 -33 183 2 2 1512 342 0 0 0 chr1 121618381 121618419 -75577013 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1512 282 179 0 0 chr1 121619095 121619151 -75576281 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1512 317 288 82 15 chr1 121619187 121619321 -75576111 - L1M5 LINE L1 -380 5793 5651 2 1512 436 348 7 28 chr1 121619429 121619571 -75575861 - B1F SINE Alu -5 144 6 2 1512 229 241 35 46 chr1 121619596 121619683 -75575749 - L1M5 LINE L1 -728 5445 5360 2 1512 426 336 27 0 chr1 121619686 121619796 -75575636 - PB1D7 SINE Alu 0 120 8 2 1512 254 153 96 21 chr1 121619808 121619878 -75575554 - PB1D10 SINE Alu -31 118 43 2 1512 423 289 27 27 chr1 121620513 121620659 -75574773 - B1_Mur1 SINE Alu -3 146 1 2 1512 1153 97 67 17 chr1 121621017 121621195 -75574237 - B2_Mm2 SINE B2 -8 187 1 2 1512 238 309 88 38 chr1 121621298 121621537 -75573895 + L1ME3A LINE L1 5683 5933 -240 2 1512 544 287 228 9 chr1 121622318 121622550 -75572882 - B4 SINE B4 -7 285 3 2 1512 294 342 38 27 chr1 121622768 121622954 -75572478 - Lx8 LINE L1 -8 7465 7278 2 1512 257 241 74 25 chr1 121623285 121623366 -75572066 - PB1D9 SINE Alu -1 119 35 2 1512 326 232 72 0 chr1 121623766 121623835 -75571597 - ID4 SINE ID 0 83 10 2 1512 385 360 44 22 chr1 121624420 121624647 -75570785 + L1MD LINE L1 5354 5585 -657 2 1512 661 116 97 9 chr1 121624721 121624834 -75570598 - B1_Mur4 SINE Alu -6 144 22 2 1512 316 218 70 114 chr1 121624749 121624863 -75570569 - MT2B LTR ERVL -344 257 149 2 1512 202 268 0 0 chr1 121624885 121624941 -75570491 + A-rich Low_complexity Low_complexity 2 57 0 2 1512 281 282 199 44 chr1 121625245 121625542 -75569890 - L1MCb LINE L1 -4769 1982 1640 2 1512 9281 65 26 2 chr1 121625660 121626962 -75568470 - L1Md_F2 LINE L1 0 6582 5251 2 1512 378 0 0 0 chr1 121626962 121627004 -75568428 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1512 9281 67 32 3 chr1 121627004 121627623 -75567809 - L1Md_F2 LINE L1 -633 5250 4605 2 1512 2336 227 99 71 chr1 121627623 121628500 -75566932 + RLTR13D6 LTR ERVK 1 902 0 2 1512 3000 54 8 3 chr1 121628500 121628892 -75566540 - L1_Mm LINE L1 -1273 4610 4217 2 1512 319 300 85 30 chr1 121629189 121629362 -75566070 - L1MCb LINE L1 -5882 163 2 2 1512 23 68 0 0 chr1 121629841 121629885 -75565547 + AT_rich Low_complexity Low_complexity 1 44 0 2 1512 207 146 54 18 chr1 121629928 121629984 -75565448 + (TTATA)n Simple_repeat Simple_repeat 2 59 0 2 1512 1191 259 63 32 chr1 121630653 121630918 -75564514 - MTEa LTR MaLR -4 375 97 2 1512 854 153 183 11 chr1 121630918 121631109 -75564323 - URR1B DNA MER1_type 0 225 2 2 1512 1191 259 63 32 chr1 121631109 121631158 -75564274 - MTEa LTR MaLR -283 96 51 2 1512 3729 280 123 25 chr1 121631161 121632489 -75562943 - MTE-int LTR MaLR -122 1458 1 2 1512 274 143 234 0 chr1 121632489 121632550 -75562882 - RMER12 LTR ERVK -826 496 418 2 1512 400 79 104 125 chr1 121633403 121633547 -75561885 + RLTR19-int LTR ERVK 3269 3409 -2728 2 1512 1419 134 179 41 chr1 121633667 121634187 -75561245 + RLTR19-int LTR ERVK 3386 3976 -2161 2 1512 23 92 0 0 chr1 121634305 121634370 -75561062 + AT_rich Low_complexity Low_complexity 1 65 0 2 1512 26 88 0 0 chr1 121634435 121634503 -75560929 + AT_rich Low_complexity Low_complexity 1 68 0 2 23 1566 212 66 19 chr1 121634593 121634972 -75560460 + RMER16-int LTR ERVK 3569 3965 -1441 2 1513 2058 296 86 24 chr1 121635206 121636156 -75559276 + RMER16-int LTR ERVK 3981 4989 -417 2 1513 397 316 0 69 chr1 121636383 121636543 -75558889 + IAP-d-int LTR ERVK 6387 6535 -7 2 1513 2411 104 85 15 chr1 121637108 121637518 -75557914 - RMER12 LTR ERVK -883 439 1 2 1513 791 182 181 6 chr1 121637545 121637727 -75557705 + B3 SINE B2 2 215 -1 2 1513 1268 94 6 0 chr1 121638159 121638339 -75557093 + L1Md_F2 LINE L1 6390 6570 -12 3 1513 384 171 79 0 chr1 121638355 121638431 -75557001 - B1_Mm SINE Alu -54 93 12 3 1513 285 208 35 105 chr1 121638356 121638442 -75556990 - MT2B LTR ERVL -354 247 168 3 1513 470 133 67 0 chr1 121638723 121638798 -75556634 + B1_Mur4 SINE Alu 65 144 -6 3 1513 2467 72 33 3 chr1 121639004 121639340 -75556092 - ORR1A1 LTR MaLR 0 346 1 3 1513 1650 258 71 55 chr1 121640200 121640806 -75554626 + Lx9 LINE L1 6853 7468 -176 3 1513 24 0 0 0 chr1 121640872 121640896 -75554536 + AT_rich Low_complexity Low_complexity 1 24 0 3 1513 35432 34 0 0 chr1 121640896 121646383 -75549049 + L1Md_T LINE L1 8 5589 -297 3 1513 8971 6 0 0 chr1 121646383 121647379 -75548053 + L1Md_T LINE L1 5590 6585 0 3 1513 1344 94 15 20 chr1 121647386 121647581 -75547851 + B2_Mm2 SINE B2 2 195 0 3 1513 23 0 0 0 chr1 121648011 121648034 -75547398 + AT_rich Low_complexity Low_complexity 1 23 0 3 1513 26949 93 38 6 chr1 121648533 121650455 -75544977 - L1_Mus2 LINE L1 0 6566 4645 3 1513 3265 53 2 0 chr1 121650455 121650848 -75544584 + MTA_Mm LTR MaLR 1 394 -2 3 1513 26949 133 77 7 chr1 121650848 121654750 -75540682 - L1_Mus2 LINE L1 -1239 4644 374 3 1513 23 33 0 0 chr1 121655030 121655060 -75540372 + AT_rich Low_complexity Low_complexity 1 30 0 3 1513 310 192 19 0 chr1 121655089 121655141 -75540291 + ID4 SINE ID 14 66 -17 3 1513 550 227 91 0 chr1 121655404 121655536 -75539896 + B1_Mus1 SINE Alu 4 147 -1 3 1513 189 261 231 17 chr1 121655615 121655732 -75539700 - MIR SINE MIR -112 150 9 3 1513 696 201 50 14 chr1 121655821 121655962 -75539470 + B1_Mur3 SINE Alu 4 149 0 3 1513 593 206 245 18 chr1 121656002 121656165 -75539267 + B3 SINE B2 5 204 -12 3 1513 32 0 0 0 chr1 121656401 121656433 -75538999 + AT_rich Low_complexity Low_complexity 1 32 0 3 1513 601 200 175 31 chr1 121656449 121656609 -75538823 - B3A SINE B2 -15 183 1 3 1513 571 162 57 35 chr1 121656711 121656852 -75538580 + MYSERV6-int LTR ERVK 6531 6674 -2285 3 1513 599 203 8 56 chr1 121657293 121657418 -75538014 + B1_Mur3 SINE Alu 21 139 -10 3 1513 6702 223 63 71 chr1 121657606 121658643 -75536789 + MYSERV16_I-int LTR ERVK 2 1353 -1489 3 1513 3029 40 0 21 chr1 121658643 121659029 -75536403 + L1Md_F3 LINE L1 6207 6584 0 3 1513 6702 222 64 71 chr1 121659029 121660001 -75535431 + MYSERV16_I-int LTR ERVK 1039 1986 -340 3 1513 1135 81 0 0 chr1 121660001 121660149 -75535283 + B1_Mus1 SINE Alu 1 148 0 3 1513 6702 222 91 39 chr1 121660149 121660477 -75534955 + MYSERV16_I-int LTR ERVK 1987 2194 -132 3 1513 2385 158 78 26 chr1 121660481 121660982 -75534450 + RLTR11A2 LTR ERVK 1 527 0 3 1513 2303 148 26 10 chr1 121661174 121661562 -75533870 - ORR1B1 LTR MaLR 0 394 1 3 1513 21 0 0 0 chr1 121662093 121662114 -75533318 + AT_rich Low_complexity Low_complexity 1 21 0 3 1513 228 342 53 26 chr1 121662185 121662299 -75533133 + PB1D10 SINE Alu 1 117 0 3 1513 22 0 0 0 chr1 121662567 121662589 -75532843 + AT_rich Low_complexity Low_complexity 1 22 0 3 1513 6023 60 7 1 chr1 121663976 121665107 -75530325 - L1_Mus2 LINE L1 -238 6328 5188 3 1513 1741 54 32 24 chr1 121665107 121665353 -75530079 + L1_Mus2 LINE L1 6319 6566 0 3 1513 31 0 0 0 chr1 121665369 121665400 -75530032 + AT_rich Low_complexity Low_complexity 1 31 0 3 1513 261 98 0 0 chr1 121665421 121665462 -75529970 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 1513 737 251 40 12 chr1 121665578 121665751 -75529681 - B3A SINE B2 -19 179 2 3 1513 1223 246 59 20 chr1 121666227 121666568 -75528864 + ORR1E LTR MaLR 2 355 -4 3 1513 1116 69 7 0 chr1 121666860 121667004 -75528428 + B1_Mus2 SINE Alu 2 146 -1 3 1513 950 272 60 94 chr1 121667259 121667673 -75527759 + Lx5 LINE L1 6301 6700 -350 3 1513 545 285 13 0 chr1 121667950 121668108 -75527324 - Lx6 LINE L1 -779 6681 6522 3 1513 1058 100 87 6 chr1 121668368 121668529 -75526903 + B2_Mm2 SINE B2 3 176 -19 3 1513 1360 66 28 6 chr1 121668530 121668712 -75526720 - B2_Mm2 SINE B2 -8 187 2 3 1513 1091 126 57 6 chr1 121668718 121668894 -75526538 - B2_Mm2 SINE B2 -10 185 1 3 1513 1440 63 15 20 chr1 121669028 121669223 -75526209 + B2_Mm2 SINE B2 2 195 0 3 1513 428 320 47 10 chr1 121670006 121670213 -75525219 + MTD LTR MaLR 158 399 -20 3 1513 489 299 29 22 chr1 121670575 121670712 -75524720 + RSINE1 SINE B4 28 165 0 3 1513 428 260 9 9 chr1 121670941 121671046 -75524386 - PB1D10 SINE Alu -7 110 6 3 1513 284 306 24 0 chr1 121670975 121671060 -75524372 - ID_B1 SINE B4 -67 157 71 3 1513 1231 241 29 112 chr1 121671116 121671528 -75523904 - MTE2a LTR MaLR -1 378 1 3 1513 270 257 27 0 chr1 121671601 121671675 -75523757 - L1M4 LINE L1 -465 5719 5644 3 1513 235 253 49 25 chr1 121671701 121671782 -75523650 + (CATG)n Simple_repeat Simple_repeat 4 86 0 3 1513 375 281 37 0 chr1 121671795 121671877 -75523555 - B4 SINE B4 -10 282 198 3 1513 265 264 137 77 chr1 121672494 121672544 -75522888 - B2_Mm1a SINE B2 -14 179 2 3 1513 638 186 42 0 chr1 121672544 121672662 -75522770 - RSINE1 SINE B4 -40 125 3 3 1513 510 280 22 43 chr1 121672684 121672822 -75522610 - B4 SINE B4 -129 163 29 3 1513 199 255 130 19 chr1 121672839 121672947 -75522485 - MIR SINE MIR -10 252 133 3 1513 369 0 0 0 chr1 121673074 121673115 -75522317 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1513 371 296 116 30 chr1 121673202 121673366 -75522066 + MTEb LTR MaLR 185 362 -17 3 1513 361 290 36 51 chr1 121673389 121673527 -75521905 - L1M4c LINE L1 -4599 1785 1650 3 1513 341 272 86 32 chr1 121673620 121673806 -75521626 - L1M4c LINE L1 -4730 1654 1459 3 1513 753 174 36 0 chr1 121673814 121673952 -75521480 - B1_Mur4 SINE Alu -2 148 6 3 1513 194 314 128 7 chr1 121674275 121674416 -75521016 - L2 LINE L2 -383 3036 2879 3 1513 482 217 85 25 chr1 121674553 121674671 -75520761 + RSINE1 SINE B4 6 130 -35 3 1513 288 0 0 0 chr1 121674677 121674709 -75520723 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1513 362 250 0 13 chr1 121674841 121674918 -75520514 - ID4 SINE ID -5 78 3 3 1513 216 0 0 0 chr1 121675108 121675132 -75520300 + (CATTT)n Simple_repeat Simple_repeat 3 26 0 3 1513 28 0 0 0 chr1 121675216 121675244 -75520188 + AT_rich Low_complexity Low_complexity 1 28 0 3 1513 319 302 118 41 chr1 121675285 121675531 -75519901 + L1M5 LINE L1 4013 4289 -1857 3 1513 754 113 0 0 chr1 121675532 121675638 -75519794 + B2_Mm2 SINE B2 2 107 -88 3 1513 793 176 44 0 chr1 121675999 121676135 -75519297 - B1_Mus1 SINE Alu -6 142 1 3 1513 259 270 75 65 chr1 121677001 121677108 -75518324 + PB1D10 SINE Alu 9 116 -1 3 1513 200 163 23 0 chr1 121677387 121677430 -75518002 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 3 1513 238 311 236 8 chr1 121677577 121677700 -75517732 - RSINE1 SINE B4 -2 163 13 3 1513 22 0 0 0 chr1 121677957 121677979 -75517453 + AT_rich Low_complexity Low_complexity 1 22 0 3 1513 1065 255 31 21 chr1 121678018 121678306 -75517126 + B4A SINE B4 2 292 0 3 1513 786 259 62 0 chr1 121678673 121678866 -75516566 - B3 SINE B2 -6 210 6 3 1513 237 247 128 49 chr1 121678971 121679073 -75516359 + PB1D7 SINE Alu 11 120 0 3 1513 848 131 256 0 chr1 121679581 121679757 -75515675 - URR1B DNA MER1_type -3 222 2 3 1513 23 86 0 0 chr1 121679937 121679995 -75515437 + AT_rich Low_complexity Low_complexity 1 58 0 3 1513 698 189 0 0 chr1 121680229 121680340 -75515092 - PB1D9 SINE Alu -7 113 3 3 1513 26 0 0 0 chr1 121681011 121681037 -75514395 + AT_rich Low_complexity Low_complexity 1 26 0 3 1513 652 264 21 0 chr1 121681211 121681355 -75514077 - RSINE1 SINE B4 -17 148 2 3 1513 572 294 54 38 chr1 121681377 121681561 -75513871 - B4A SINE B4 -103 189 3 3 1513 1127 206 5 0 chr1 121682176 121682385 -75513047 + B3 SINE B2 2 211 -5 3 1513 826 244 71 5 chr1 121682595 121682793 -75512639 + B3 SINE B2 2 212 -4 3 1513 6406 58 10 8 chr1 121682908 121683774 -75511658 + RLTR13A3 LTR ERVK 111 978 0 3 1513 947 154 26 5 chr1 121683860 121684049 -75511383 + B2_Mm2 SINE B2 1 193 -2 3 1513 332 182 0 11 chr1 121684672 121684761 -75510671 + GA-rich Low_complexity Low_complexity 2 89 0 3 1513 27 0 0 0 chr1 121685253 121685280 -75510152 + AT_rich Low_complexity Low_complexity 1 27 0 3 1513 874 215 42 33 chr1 121685457 121685669 -75509763 + B3 SINE B2 1 214 -2 3 1513 254 280 40 13 chr1 121685999 121686075 -75509357 + ORR1D2 LTR MaLR 6 83 -287 3 1513 3071 37 36 10 chr1 121686094 121686480 -75508952 + MTA_Mm LTR MaLR 1 396 0 3 1513 1332 331 102 83 chr1 121686680 121687649 -75507783 + MTA_Mm-int LTR MaLR 1 988 -592 3 1513 1201 41 7 0 chr1 121688418 121688565 -75506867 + B1_Mus1 SINE Alu 1 148 0 3 1513 318 250 0 100 chr1 121688817 121688897 -75506535 + B4A SINE B4 221 292 0 3 1513 252 0 0 0 chr1 121689072 121689100 -75506332 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1513 245 278 125 0 chr1 121689203 121689275 -75506157 - ID4_ SINE ID -2 81 1 3 1513 238 204 20 0 chr1 121689524 121689573 -75505859 + PB1D9 SINE Alu 4 53 -67 3 1513 953 290 107 77 chr1 121689585 121689951 -75505481 - MTE2b LTR MaLR 0 379 3 3 1513 395 240 27 0 chr1 121689961 121690036 -75505396 + B1F1 SINE Alu 68 144 -5 3 1513 438 209 26 21 chr1 121690078 121690223 -75505209 + B3 SINE B2 1 211 -5 3 1513 267 299 0 0 chr1 121690267 121690334 -75505098 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 3 1513 322 277 0 0 chr1 121690276 121690341 -75505091 + ID4 SINE ID 16 80 -3 3 1513 2682 198 34 22 chr1 121690892 121691780 -75503652 + RMER1B Other Other 42 1066 0 3 1513 765 192 119 0 chr1 121692061 121692212 -75503220 + B3 SINE B2 1 169 -47 3 1513 304 104 101 29 chr1 121692693 121692762 -75502670 + B3 SINE B2 143 216 0 3 1513 1138 50 0 0 chr1 121692837 121692976 -75502456 + B1_Mm SINE Alu 2 140 -7 4 1513 213 121 0 0 chr1 121694524 121694557 -75500875 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1513 462 280 75 8 chr1 121694565 121694698 -75500734 - B3A SINE B2 -56 142 1 4 1513 343 234 39 0 chr1 121694936 121695013 -75500419 - RLTR24 LTR ERV1 -196 333 254 4 1513 405 308 19 95 chr1 121695116 121695129 -75500303 + ID_B1 SINE B4 79 146 -78 4 1513 508 305 8 15 chr1 121695129 121695262 -75500170 + B1F SINE Alu 10 141 -8 4 1513 405 308 19 95 chr1 121695262 121695274 -75500158 + ID_B1 SINE B4 147 224 0 4 1513 446 342 121 57 chr1 121695618 121696005 -75499427 + MLT1G3 LTR MaLR 14 425 -170 4 1513 261 361 33 25 chr1 121696470 121696543 -75498889 + B4 SINE B4 12 85 -207 4 1513 267 294 0 0 chr1 121696543 121696594 -75498838 + PB1D10 SINE Alu 1 51 -66 4 1513 419 297 13 51 chr1 121697696 121697852 -75497580 + RSINE1 SINE B4 1 150 -15 4 1513 298 243 128 24 chr1 121698224 121698429 -75497003 + L1ME3 LINE L1 5681 5899 -341 4 1513 210 150 0 0 chr1 121698824 121698864 -75496568 + (ATG)n Simple_repeat Simple_repeat 1 40 0 4 1513 243 175 33 66 chr1 121699513 121699574 -75495858 - B1F SINE Alu -14 135 77 4 1513 283 271 16 25 chr1 121699673 121699794 -75495638 + HAL1 LINE L1 1528 1647 -860 4 1513 757 208 15 0 chr1 121699896 121700026 -75495406 - B1_Mur3 SINE Alu -5 144 13 4 1513 1439 266 162 29 chr1 121700201 121700878 -75494554 + L1MD LINE L1 2511 3278 -2868 4 1513 1149 144 11 0 chr1 121700878 121701065 -75494367 + B2_Mm2 SINE B2 1 189 -6 4 1513 1439 272 183 31 chr1 121701065 121701714 -75493718 + L1MD LINE L1 3279 4086 -2060 4 1513 335 207 171 0 chr1 121701806 121701917 -75493515 + L1MD LINE L1 4348 4477 -1669 4 1513 565 293 69 14 chr1 121702015 121702233 -75493199 - MER99 DNA hAT? -601 230 1 4 1513 374 235 42 34 chr1 121702305 121702424 -75493008 - PB1D9 SINE Alu 0 120 1 4 1513 271 292 67 39 chr1 121702433 121702611 -75492821 - L1MD LINE L1 -1021 5125 4943 4 1513 319 333 97 10 chr1 121702676 121702779 -75492653 - RSINE1 SINE B4 -13 152 41 4 1513 562 264 55 20 chr1 121702887 121703088 -75492344 + MER2 DNA MER2_type 136 343 -2 4 1513 1176 119 23 0 chr1 121703154 121703330 -75492102 + B2_Mm2 SINE B2 2 181 -14 4 1513 352 156 26 67 chr1 121703330 121703444 -75491988 + B2_Mm2 SINE B2 2 109 -107 4 1513 21 36 0 0 chr1 121704674 121704702 -75490730 + AT_rich Low_complexity Low_complexity 1 28 0 4 1513 1375 89 16 5 chr1 121704922 121705114 -75490318 + B2_Mm2 SINE B2 1 194 -1 4 1513 518 241 46 40 chr1 121705292 121705465 -75489967 + L1M4 LINE L1 28 201 -6341 4 1513 2197 193 52 21 chr1 121705527 121706046 -75489386 + Lx6 LINE L1 313 847 -6881 4 1513 2835 150 153 43 chr1 121706055 121707106 -75488326 + Lx6 LINE L1 958 2291 -3586 4 1513 1438 78 5 0 chr1 121707106 121707298 -75488134 + B2_Mm1a SINE B2 1 193 0 4 1513 2835 127 63 45 chr1 121707298 121707370 -75488062 + Lx6 LINE L1 2292 2362 -3518 4 1513 2314 98 3 0 chr1 121707374 121707692 -75487740 - ORR1A2 LTR MaLR -8 319 1 4 1513 377 143 16 146 chr1 121707693 121707816 -75487616 + Lx6 LINE L1 2359 2465 -3415 4 1513 351 0 0 0 chr1 121707855 121707894 -75487538 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1513 2037 86 68 68 chr1 121707894 121708220 -75487212 + ORR1A2 LTR MaLR 1 326 -1 4 1513 534 103 0 0 chr1 121708220 121708298 -75487134 + (CATA)n Simple_repeat Simple_repeat 4 81 0 4 1513 15284 132 50 23 chr1 121708299 121710099 -75485333 + Lx6 LINE L1 2997 4842 -1038 4 1513 216 97 0 0 chr1 121710099 121710130 -75485302 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1513 15284 180 69 27 chr1 121710130 121712613 -75482819 + Lx6 LINE L1 4843 7450 -10 4 1513 277 339 99 57 chr1 121712709 121713041 -75482391 + L1M4 LINE L1 313 658 -5884 4 1513 1936 136 40 0 chr1 121713168 121713469 -75481963 + ORR1A3 LTR MaLR 14 326 0 4 1513 256 131 11 0 chr1 121713508 121713566 -75481866 + L1_Mur3 LINE L1 4150 4243 -1903 4 1513 591 150 213 0 chr1 121713615 121713742 -75481690 - URR1A DNA MER1_type -70 156 3 4 1513 200 165 62 25 chr1 121713743 121713778 -75481654 + A-rich Low_complexity Low_complexity 2 35 0 4 1513 660 174 0 113 chr1 121713778 121713946 -75481486 + B1_Mur4 SINE Alu 1 149 -1 4 1513 200 165 62 25 chr1 121713946 121713991 -75481441 + A-rich Low_complexity Low_complexity 36 85 0 4 1513 399 41 0 0 chr1 121714212 121714261 -75481171 + (TAA)n Simple_repeat Simple_repeat 3 51 0 4 1513 570 309 5 7 chr1 121715487 121715655 -75479777 + ID_B1 SINE B4 60 224 -68 4 1513 336 48 0 0 chr1 121715701 121715743 -75479689 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1513 355 335 48 53 chr1 121716400 121716627 -75478805 + MLT1G LTR MaLR 355 580 -11 4 1513 312 262 37 12 chr1 121716694 121716775 -75478657 - RMER30 DNA MER1_type -1 201 119 4 1513 1074 96 0 0 chr1 121717115 121717417 -75478015 + (TG)n Simple_repeat Simple_repeat 1 302 0 4 1513 217 336 47 28 chr1 121717508 121717615 -75477817 - MIRc SINE MIR -146 122 14 4 1513 425 257 26 60 chr1 121717741 121717857 -75477575 + MT2B LTR ERVL 152 263 -338 4 1513 601 206 49 84 chr1 121717761 121717904 -75477528 + B1_Mus1 SINE Alu 11 148 0 4 1513 1142 64 0 0 chr1 121718154 121718295 -75477137 + B1_Mus1 SINE Alu 1 141 -7 4 1513 787 77 6 60 chr1 121718298 121718465 -75476967 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 4 1513 195 310 35 0 chr1 121718598 121718656 -75476776 + MIRc SINE MIR 93 152 -116 4 1513 730 192 189 68 chr1 121719078 121719268 -75476164 + B3 SINE B2 1 213 -3 4 1513 824 196 21 26 chr1 121719296 121719485 -75475947 - B3 SINE B2 -10 185 3 4 1513 623 270 59 73 chr1 121719486 121719606 -75475826 - MER58B DNA MER1_type -27 314 189 4 1513 5072 83 13 11 chr1 121719606 121720322 -75475110 + L1_Mus3 LINE L1 5911 6627 -11 4 1513 623 270 59 73 chr1 121720322 121720421 -75475011 - MER58B DNA MER1_type -153 188 98 4 1513 643 257 86 107 chr1 121720502 121720689 -75474743 - B3A SINE B2 -2 193 11 4 1513 292 340 82 53 chr1 121720692 121720808 -75474624 + MIRb SINE MIR 89 216 -52 4 1513 1033 190 42 33 chr1 121720808 121721020 -75474412 - B3 SINE B2 0 216 3 4 1513 292 340 82 53 chr1 121721020 121721074 -75474358 + MIRb SINE MIR 217 264 -4 4 1513 1186 55 0 0 chr1 121721523 121721668 -75473764 + B1_Mus2 SINE Alu 3 147 0 4 1513 29 60 0 0 chr1 121721669 121721719 -75473713 + AT_rich Low_complexity Low_complexity 1 50 0 4 1513 23 0 0 0 chr1 121721738 121721761 -75473671 + AT_rich Low_complexity Low_complexity 1 23 0 4 1513 406 254 63 35 chr1 121721919 121722062 -75473370 + B1F SINE Alu 2 148 -1 4 1513 468 218 188 31 chr1 121722256 121722384 -75473048 + B1_Mur3 SINE Alu 2 149 0 4 1513 21 0 0 0 chr1 121723390 121723411 -75472021 + AT_rich Low_complexity Low_complexity 1 21 0 4 1513 298 0 48 0 chr1 121723443 121723485 -75471947 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1513 895 268 33 37 chr1 121723496 121723767 -75471665 - B4 SINE B4 -18 274 5 4 1513 295 266 12 12 chr1 121723974 121724054 -75471378 + L1MC4 LINE L1 6461 6540 -1502 4 1513 267 235 72 14 chr1 121724055 121724124 -75471308 + ID4_ SINE ID 8 80 -3 4 1513 648 269 71 50 chr1 121724211 121724508 -75470924 + L1MC4 LINE L1 6755 7057 -985 4 1513 270 0 0 0 chr1 121724668 121724698 -75470734 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1513 476 312 78 28 chr1 121724825 121725109 -75470323 + L1MC4 LINE L1 7330 7627 -415 4 1513 300 364 114 0 chr1 121725109 121725249 -75470183 + RSINE1 SINE B4 2 157 -8 4 1513 397 310 144 35 chr1 121725251 121725535 -75469897 + L1MC4 LINE L1 7584 7898 -144 4 1513 688 152 70 28 chr1 121725580 121725722 -75469710 + B1_Mur3 SINE Alu 1 148 -1 4 1513 201 125 0 48 chr1 121725722 121725764 -75469668 + A-rich Low_complexity Low_complexity 1 40 0 4 1513 774 310 9 18 chr1 121725843 121726063 -75469369 + ID_B1 SINE B4 6 223 -1 4 1513 442 317 0 0 chr1 121726762 121726882 -75468550 + PB1D7 SINE Alu 1 120 0 4 1513 383 283 43 26 chr1 121727922 121728038 -75467394 + B1F SINE Alu 31 148 -1 4 1513 273 29 0 0 chr1 121728442 121728476 -75466956 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 4 1513 245 332 68 77 chr1 121728503 121728647 -75466785 + B4A SINE B4 55 210 -82 4 1513 1057 48 13 40 chr1 121728647 121728785 -75466647 + B1_Mus1 SINE Alu 2 138 -10 4 1513 261 0 0 0 chr1 121728785 121728814 -75466618 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1513 1057 48 13 40 chr1 121728814 121728826 -75466606 + B1_Mus1 SINE Alu 139 148 0 4 1513 245 332 68 77 chr1 121728826 121728903 -75466529 + B4A SINE B4 211 274 -18 4 1513 281 340 18 18 chr1 121729805 121729970 -75465462 - MER3 DNA MER1_type -17 192 28 4 1513 23 86 0 0 chr1 121731349 121731407 -75464025 + AT_rich Low_complexity Low_complexity 1 58 0 4 1513 423 0 0 0 chr1 121732662 121732709 -75462723 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1513 405 145 0 0 chr1 121733969 121734045 -75461387 + (TCC)n Simple_repeat Simple_repeat 2 77 0 4 1513 207 0 0 0 chr1 121734823 121734846 -75460586 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1513 189 121 0 0 chr1 121734878 121734911 -75460521 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1513 222 277 172 50 chr1 121734912 121735011 -75460421 - RSINE1 SINE B4 -44 121 11 4 1513 839 209 0 0 chr1 121735135 121735283 -75460149 + B1_Mur4 SINE Alu 3 150 0 4 1513 507 244 59 0 chr1 121735520 121735639 -75459793 + ID_B1 SINE B4 91 216 -8 4 1513 424 204 10 20 chr1 121736109 121736209 -75459223 + B4A SINE B4 1 99 -193 4 1513 366 261 42 78 chr1 121736213 121736404 -75459028 - L1MB7 LINE L1 -87 6097 5914 4 1513 570 269 148 15 chr1 121736584 121736780 -75458652 + ID_B1 SINE B4 3 224 0 4 1513 437 83 313 61 chr1 121736860 121736975 -75458457 - B2_Mm2 SINE B2 -5 190 47 4 1513 1381 62 11 0 chr1 121737013 121737189 -75458243 - B2_Mm1t SINE B2 -13 180 3 4 1513 317 148 0 16 chr1 121737189 121737251 -75458181 - MER5A1 DNA MER1_type -3 163 103 4 1513 605 223 66 20 chr1 121737252 121737403 -75458029 + RSINE1 SINE B4 4 161 -4 4 1513 911 41 16 0 chr1 121737466 121737588 -75457844 + B1_Mm SINE Alu 24 147 0 4 1513 6769 34 64 1 chr1 121737625 121739050 -75456382 - L1Md_F2 LINE L1 -1 6581 5067 4 1513 1417 107 0 0 chr1 121739060 121739256 -75456176 - L1_Mus2 LINE L1 -1 6565 6370 4 1513 270 81 0 0 chr1 121739733 121739770 -75455662 + (TTC)n Simple_repeat Simple_repeat 1 37 0 5 1513 616 216 20 33 chr1 121740302 121740455 -75454977 + RSINE1 SINE B4 11 161 -4 5 1513 255 322 0 0 chr1 121740481 121740558 -75454874 + ID2 SINE ID 14 90 -62 5 1513 762 301 96 17 chr1 121740731 121740816 -75454616 + B4 SINE B4 2 83 -209 5 1513 315 0 0 0 chr1 121740816 121740851 -75454581 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1513 762 301 96 17 chr1 121740851 121741005 -75454427 + B4 SINE B4 84 259 -33 5 1513 351 0 0 0 chr1 121741052 121741091 -75454341 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1513 558 232 20 34 chr1 121741323 121741470 -75453962 + B1_Mur4 SINE Alu 6 150 0 5 1513 504 284 78 39 chr1 121741538 121741743 -75453689 + ID_B1 SINE B4 12 224 0 5 1513 781 173 45 0 chr1 121741767 121741900 -75453532 + B1_Mur1 SINE Alu 3 141 -8 5 1513 1012 262 32 21 chr1 121741932 121742213 -75453219 + B4 SINE B4 5 288 -4 5 1513 270 0 0 0 chr1 121742222 121742252 -75453180 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1513 251 303 140 29 chr1 121742281 121742417 -75453015 + B4A SINE B4 61 211 -81 5 1513 624 283 0 0 chr1 121742421 121742566 -75452866 + MTEa LTR MaLR 45 189 -190 5 1513 511 230 79 0 chr1 121742583 121742709 -75452723 - MLT1D LTR MaLR -367 138 3 5 1513 562 266 25 40 chr1 121742800 121743000 -75452432 - B3A SINE B2 0 198 2 5 1513 1825 188 45 55 chr1 121743328 121743710 -75451722 - ORR1C1 LTR MaLR 0 378 1 5 1513 232 159 0 0 chr1 121743725 121743769 -75451663 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1513 742 233 0 7 chr1 121743769 121743916 -75451516 - B1_Mur2 SINE Alu -1 148 3 5 1513 357 242 61 73 chr1 121743916 121744081 -75451351 + MER112 DNA MER1_type 2 164 -97 5 1513 1135 248 7 38 chr1 121744182 121744475 -75450957 + B4A SINE B4 9 292 0 5 1513 901 42 8 0 chr1 121744841 121744961 -75450471 + B1_Mm SINE Alu 27 147 0 5 1513 640 212 0 27 chr1 121744979 121745101 -75450331 + polypurine Low_complexity Low_complexity 2 120 0 5 1513 548 244 108 10 chr1 121745101 121745304 -75450128 + ID_B1 SINE B4 2 224 0 5 1513 640 212 0 27 chr1 121745304 121745365 -75450067 + polypurine Low_complexity Low_complexity 121 180 0 5 1513 772 221 20 12 chr1 121745375 121745678 -75449754 + GA-rich Low_complexity Low_complexity 1 305 0 5 1513 432 0 0 0 chr1 121746220 121746268 -75449164 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1513 416 283 34 14 chr1 121746277 121746424 -75449008 - B3A SINE B2 -38 160 11 5 1513 227 229 43 0 chr1 121746633 121746703 -75448729 - ID_B1 SINE B4 -1 223 151 5 1513 218 225 43 149 chr1 121746703 121746727 -75448705 - B1F SINE Alu -1 148 65 5 1513 336 299 151 13 chr1 121746858 121747017 -75448415 - ID_B1 SINE B4 -11 213 33 5 1513 374 245 51 19 chr1 121747044 121747202 -75448230 - MER5C DNA MER1_type -65 248 86 5 1513 225 0 0 0 chr1 121747203 121747228 -75448204 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1513 306 0 0 0 chr1 121747228 121747261 -75448171 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1513 474 18 0 0 chr1 121747261 121747315 -75448117 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1513 459 289 154 19 chr1 121747495 121747657 -75447775 + B3A SINE B2 2 185 -13 5 1513 664 225 66 19 chr1 121747842 121748055 -75447377 - ID_B1 SINE B4 -1 223 1 5 1513 332 261 0 0 chr1 121748059 121748128 -75447304 + B3A SINE B2 23 91 -107 5 1513 653 210 8 0 chr1 121748138 121748262 -75447170 - RSINE1 SINE B4 -38 127 3 5 1513 432 0 0 0 chr1 121748271 121748319 -75447113 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 5 1513 330 87 0 0 chr1 121748393 121748439 -75446993 + (ATTG)n Simple_repeat Simple_repeat 3 48 0 5 1513 523 284 101 0 chr1 121748753 121748901 -75446531 - RSINE1 SINE B4 0 165 3 5 1513 297 0 0 0 chr1 121749195 121749228 -75446204 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1513 563 248 30 84 chr1 121749234 121749401 -75446031 - RSINE1 SINE B4 -6 159 2 5 1513 1142 70 0 0 chr1 121750028 121750170 -75445262 - B1_Mus1 SINE Alu -6 142 1 5 1513 335 243 60 128 chr1 121750170 121750438 -75444994 - RMER4B LTR ERVK -28 583 343 5 1513 466 298 22 6 chr1 121750554 121750733 -75444699 - L1M2 LINE L1 -820 5323 5142 5 1513 2087 107 99 68 chr1 121751535 121751917 -75443515 + ORR1B1 LTR MaLR 1 394 0 5 1513 204 125 0 0 chr1 121752030 121752062 -75443370 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1513 886 254 142 4 chr1 121752352 121752601 -75442831 + B4A SINE B4 3 286 -6 5 1513 546 163 0 0 chr1 121752634 121752732 -75442700 + T-rich Low_complexity Low_complexity 1 98 0 5 1513 23 0 0 0 chr1 121752812 121752835 -75442597 + AT_rich Low_complexity Low_complexity 1 23 0 5 1513 1160 114 22 22 chr1 121752837 121753017 -75442415 - B2_Mm1t SINE B2 -13 180 1 5 1513 444 270 17 0 chr1 121753401 121753516 -75441916 + ID_B1 SINE B4 2 118 -106 5 1513 680 301 54 29 chr1 121753539 121753819 -75441613 + B4A SINE B4 1 287 -5 5 1513 756 33 0 0 chr1 121753863 121753954 -75441478 + (TC)n Simple_repeat Simple_repeat 1 91 0 5 1513 195 42 0 0 chr1 121753954 121753977 -75441455 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1513 471 189 11 0 chr1 121754165 121754255 -75441177 + B3 SINE B2 126 216 0 5 1513 691 223 58 72 chr1 121754565 121754773 -75440659 - B3 SINE B2 -11 205 1 5 1513 670 171 17 17 chr1 121754788 121754961 -75440471 + CT-rich Low_complexity Low_complexity 4 176 0 5 1513 538 61 0 0 chr1 121754961 121755027 -75440405 + (TCC)n Simple_repeat Simple_repeat 3 68 0 5 1513 341 273 21 54 chr1 121755032 121755125 -75440307 + B1_Mur1 SINE Alu 23 112 -37 5 1513 441 0 0 0 chr1 121755160 121755209 -75440223 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1513 607 282 45 0 chr1 121755217 121755373 -75440059 + RSINE1 SINE B4 3 165 0 5 1513 569 232 40 16 chr1 121755490 121755763 -75439669 - L1MA4A LINE L1 -1477 5996 5751 5 1513 295 105 35 0 chr1 121755771 121755828 -75439604 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 5 1513 360 238 0 0 chr1 121755830 121755910 -75439522 - L1MA4A LINE L1 -518 5782 5703 5 1513 795 271 111 37 chr1 121756183 121756508 -75438924 - ORR1E LTR MaLR -10 349 1 5 1513 853 252 55 0 chr1 121757007 121757209 -75438223 - ID_B1 SINE B4 -4 220 8 5 1513 21 36 0 0 chr1 121757222 121757250 -75438182 + AT_rich Low_complexity Low_complexity 1 28 0 5 1513 632 289 19 0 chr1 121757304 121757463 -75437969 - B4A SINE B4 -130 162 1 5 1513 374 255 19 19 chr1 121757463 121757565 -75437867 + Tigger7 DNA MER2_type 2352 2453 -38 5 1513 768 291 68 118 chr1 121757756 121758154 -75437278 - MTE2b LTR MaLR 0 379 2 5 1513 234 288 120 56 chr1 121758296 121758421 -75437011 - B4 SINE B4 0 292 160 5 1513 180 336 76 0 chr1 121758691 121758810 -75436622 - MIR SINE MIR -91 171 44 5 1513 223 127 345 0 chr1 121758952 121759007 -75436425 + ID2 SINE ID 1 74 -9 5 1513 651 230 6 57 chr1 121758967 121759022 -75436410 + ID SINE ID 36 82 -142 5 1513 417 318 39 0 chr1 121759022 121759151 -75436281 + B1F2 SINE Alu 1 134 -15 5 1513 261 0 0 0 chr1 121759422 121759451 -75435981 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 1513 486 0 0 0 chr1 121759543 121759597 -75435835 + (CTA)n Simple_repeat Simple_repeat 2 55 0 5 1513 544 250 0 8 chr1 121759604 121759729 -75435703 - Lx7 LINE L1 -426 7270 7147 5 1513 198 0 0 0 chr1 121759746 121759768 -75435664 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 5 1513 660 172 0 0 chr1 121759769 121759885 -75435547 - ID_B1 SINE B4 -6 218 103 5 1513 439 269 67 7 chr1 121759885 121759904 -75435528 - B1F SINE Alu -6 143 1 5 1513 204 217 0 0 chr1 121760567 121760613 -75434819 + CT-rich Low_complexity Low_complexity 2 47 0 5 1513 529 231 96 45 chr1 121760858 121761035 -75434397 + L1MA4A LINE L1 5768 5953 -350 5 1513 441 0 0 0 chr1 121761174 121761223 -75434209 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1513 453 314 92 39 chr1 121761247 121761476 -75433956 - B4 SINE B4 -36 256 16 5 1513 228 260 30 40 chr1 121761497 121761597 -75433835 - MER5A1 DNA MER1_type -39 127 29 5 1513 929 144 49 16 chr1 121761699 121761883 -75433549 + URR1A DNA MER1_type 37 226 0 5 1513 409 260 71 118 chr1 121762299 121762469 -75432963 + MLT1D LTR MaLR 7 168 -337 5 1513 1031 229 142 0 chr1 121762471 121762724 -75432708 + B4A SINE B4 1 289 -3 5 1513 599 229 4 0 chr1 121762756 121763000 -75432432 + (CA)n Simple_repeat Simple_repeat 1 245 0 5 1513 511 248 104 0 chr1 121763018 121763143 -75432289 + B4A SINE B4 89 226 -66 5 1513 246 302 52 78 chr1 121763162 121763277 -75432155 + RSINE1 SINE B4 54 165 0 5 1513 253 281 0 0 chr1 121763584 121763641 -75431791 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1513 27 0 0 0 chr1 121764273 121764300 -75431132 + AT_rich Low_complexity Low_complexity 1 27 0 5 1513 195 220 0 0 chr1 121764300 121764350 -75431082 + CT-rich Low_complexity Low_complexity 1 50 0 5 1513 213 222 22 0 chr1 121764363 121764408 -75431024 + GA-rich Low_complexity Low_complexity 3 48 0 5 1513 216 86 0 0 chr1 121764413 121764448 -75430984 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 5 1513 541 217 125 7 chr1 121764451 121764595 -75430837 - B3A SINE B2 -37 161 1 5 1513 825 216 26 117 chr1 121764625 121764898 -75430534 - B4 SINE B4 0 292 45 5 1514 279 276 120 16 chr1 121766316 121766441 -75428991 + B4A SINE B4 6 143 -149 6 1514 535 329 7 0 chr1 121766520 121766663 -75428769 + RSINE1 SINE B4 3 146 -19 6 1514 645 171 18 9 chr1 121766700 121766812 -75428620 - PB1D9 SINE Alu -7 113 1 6 1514 1548 172 118 51 chr1 121766851 121767206 -75428226 + MTE2b LTR MaLR 1 379 0 6 1514 916 232 14 5 chr1 121767307 121767515 -75427917 + B3 SINE B2 3 212 -4 6 1514 1374 90 27 0 chr1 121767648 121767836 -75427596 + B2_Mm2 SINE B2 2 194 -1 6 1514 1124 62 21 7 chr1 121767836 121767980 -75427452 + B1_Mus1 SINE Alu 1 147 -1 6 1514 245 232 101 0 chr1 121768002 121768071 -75427361 + ID4 SINE ID 3 78 -5 6 1514 502 192 126 74 chr1 121768092 121768227 -75427205 + RSINE1 SINE B4 2 143 -22 6 1514 21 36 0 0 chr1 121768248 121768276 -75427156 + AT_rich Low_complexity Low_complexity 1 28 0 6 1514 183 114 0 0 chr1 121768326 121768361 -75427071 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 6 1514 487 261 146 36 chr1 121768388 121768635 -75426797 - B4A SINE B4 -17 275 2 6 1514 513 242 78 0 chr1 121768788 121768916 -75426516 - L1M5 LINE L1 -459 5665 5528 6 1514 236 308 22 0 chr1 121769118 121769209 -75426223 - MIR SINE MIR -66 196 104 6 1514 414 312 0 0 chr1 121769748 121769857 -75425575 + B4 SINE B4 2 110 -182 6 1514 2749 120 30 47 chr1 121769857 121770328 -75425104 + RMER4A LTR ERVK 1 463 -3 6 1514 374 181 0 40 chr1 121770459 121770534 -75424898 + B4 SINE B4 9 80 -212 6 1514 1554 229 30 33 chr1 121770546 121770939 -75424493 + MTD LTR MaLR 7 398 -21 6 1514 207 0 0 0 chr1 121770957 121770980 -75424452 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1514 510 242 108 0 chr1 121770980 121771100 -75424332 + B4 SINE B4 84 216 -76 6 1514 369 0 0 0 chr1 121771100 121771141 -75424291 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1514 189 0 0 0 chr1 121771141 121771162 -75424270 + (CCAA)n Simple_repeat Simple_repeat 3 23 0 6 1514 424 292 99 67 chr1 121771808 121772091 -75423341 + B4 SINE B4 1 292 0 6 1514 387 155 0 0 chr1 121772094 121772178 -75423254 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 1514 324 113 0 0 chr1 121772306 121772359 -75423073 - HAL1-3A_ME LINE L1 -830 2028 1976 6 1514 300 239 48 0 chr1 121772359 121772526 -75422906 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1514 22 0 0 0 chr1 121772748 121772770 -75422662 + GC_rich Low_complexity Low_complexity 1 22 0 6 1514 311 268 335 30 chr1 121773381 121773614 -75421818 - Lx8 LINE L1 -11 7462 7159 6 1514 270 0 0 0 chr1 121773806 121773836 -75421596 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1514 279 264 274 0 chr1 121774231 121774384 -75421048 + ID_B1 SINE B4 2 196 -28 6 1514 849 203 25 17 chr1 121774438 121774678 -75420754 - MTD LTR MaLR -2 417 98 6 1514 243 170 0 0 chr1 121774718 121774765 -75420667 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1514 827 230 90 38 chr1 121774776 121775043 -75420389 + B4A SINE B4 1 281 -11 6 1514 214 254 0 17 chr1 121775125 121775185 -75420247 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1514 213 337 79 34 chr1 121776032 121776210 -75419222 - L4 LINE RTE -99 1930 1745 6 1514 553 234 88 18 chr1 121776612 121776782 -75418650 + B3A SINE B2 1 182 -16 6 1514 955 102 4 4 chr1 121776853 121777098 -75418334 + (TG)n Simple_repeat Simple_repeat 1 245 0 6 1514 988 217 46 23 chr1 121777149 121777366 -75418066 - B4 SINE B4 -61 231 10 6 1514 246 95 0 0 chr1 121777472 121777514 -75417918 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 6 1514 5740 39 1 0 chr1 121777516 121778190 -75417242 - L1Md_T LINE L1 -1 6581 5907 6 1514 357 24 0 0 chr1 121778213 121778255 -75417177 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 6 1514 2498 147 33 5 chr1 121778256 121778653 -75416779 - Lx5 LINE L1 -13 7037 6630 6 1514 836 212 71 0 chr1 121778910 121779080 -75416352 - B3A SINE B2 -15 183 2 6 1514 272 304 0 0 chr1 121779288 121779357 -75416075 + ID4_ SINE ID 15 83 0 6 1514 414 0 0 0 chr1 121779857 121779903 -75415529 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1514 516 120 68 29 chr1 121780025 121780056 -75415376 - B1_Mur4 SINE Alu -1 149 122 6 1514 2760 129 45 0 chr1 121780056 121780459 -75414973 - MTC LTR MaLR 0 421 1 6 1514 516 120 68 29 chr1 121780459 121780530 -75414902 - B1_Mur4 SINE Alu -29 121 45 6 1514 398 161 0 0 chr1 121780530 121780634 -75414798 + (TCTCTG)n Simple_repeat Simple_repeat 1 104 0 6 1514 378 185 0 30 chr1 121780634 121780701 -75414731 - B4A SINE B4 -150 142 78 6 1514 307 242 0 114 chr1 121781257 121781327 -75414105 - ID4_ SINE ID -8 75 14 6 1514 883 247 282 18 chr1 121781497 121781765 -75413667 - ORR1E LTR MaLR -17 342 4 6 1514 210 71 0 0 chr1 121782263 121782291 -75413141 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 6 1514 470 246 87 9 chr1 121782528 121782643 -75412789 + ID_B1 SINE B4 36 159 -65 6 1514 568 183 8 135 chr1 121783614 121783674 -75411758 + ID_B1 SINE B4 98 152 -72 6 1514 389 282 169 97 chr1 121783674 121783941 -75411491 + B4 SINE B4 3 288 -4 6 1514 568 183 8 135 chr1 121783941 121784006 -75411426 + ID_B1 SINE B4 153 207 -17 6 1514 209 308 0 0 chr1 121784014 121784066 -75411366 + GA-rich Low_complexity Low_complexity 1 52 0 6 1514 332 316 77 19 chr1 121784127 121784282 -75411150 + RSINE1 SINE B4 2 165 0 6 1514 313 255 20 50 chr1 121784660 121784758 -75410674 - RSINE1 SINE B4 0 165 71 6 1514 1722 199 84 5 chr1 121784758 121785161 -75410271 - RMER10A LTR ERVL -1 441 7 6 1514 295 229 57 0 chr1 121785172 121785242 -75410190 - RSINE1 SINE B4 -89 76 3 6 1514 604 226 26 0 chr1 121785365 121785480 -75409952 - ID_B1 SINE B4 -106 118 1 6 1514 266 148 0 18 chr1 121785891 121785946 -75409486 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 6 1514 445 290 32 0 chr1 121786043 121786198 -75409234 - RSINE1 SINE B4 -4 161 2 6 1514 381 294 201 36 chr1 121786205 121786410 -75409022 - B4 SINE B4 0 224 4 6 1514 483 301 63 10 chr1 121786982 121787187 -75408245 - L1MB5 LINE L1 -13 6161 5946 6 1514 223 28 56 0 chr1 121787429 121787465 -75407967 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1514 263 281 142 69 chr1 121787940 121788158 -75407274 - LTR33A_ LTR ERVL 0 531 298 6 1514 356 284 66 66 chr1 121788221 121788357 -75407075 - ID_B1 SINE B4 -87 137 2 6 1514 228 265 29 14 chr1 121788673 121788742 -75406690 + MLT1L LTR MaLR 12 81 -529 6 1514 688 264 26 9 chr1 121789171 121789358 -75406074 + B3A SINE B2 1 182 -34 6 1514 555 192 41 8 chr1 121789362 121789480 -75405952 + B1_Mur2 SINE Alu 1 127 -22 6 1514 303 275 52 60 chr1 121789734 121789850 -75405582 + RMER30 DNA MER1_type 88 202 0 6 1514 597 94 0 0 chr1 121789989 121790074 -75405358 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 6 1514 333 0 0 0 chr1 121790179 121790216 -75405216 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1514 420 224 59 196 chr1 121790830 121790889 -75404543 - ID_B1 SINE B4 -4 220 182 6 1514 1516 67 0 5 chr1 121790889 121791085 -75404347 + B2_Mm2 SINE B2 1 195 0 6 1514 420 224 59 196 chr1 121791085 121791280 -75404152 - ID_B1 SINE B4 -43 181 1 6 1514 297 310 103 106 chr1 121791995 121792041 -75403391 - B3A SINE B2 -29 187 2 6 1514 602 283 33 7 chr1 121792041 121792194 -75403238 - B4A SINE B4 -134 158 2 6 1514 891 247 27 0 chr1 121792246 121792432 -75403000 - B4A SINE B4 -93 199 9 6 1514 2119 110 20 107 chr1 121792560 121793009 -75402423 - RMER17C LTR ERVK 0 410 1 6 1514 453 247 141 20 chr1 121793181 121793268 -75402164 + B4A SINE B4 122 222 -70 6 1514 378 107 0 0 chr1 121793268 121793324 -75402108 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 6 1514 453 247 141 20 chr1 121793324 121793385 -75402047 + B4A SINE B4 223 287 -5 6 1514 729 285 47 34 chr1 121793551 121793849 -75401583 - L1M2 LINE L1 -521 5779 5478 6 1514 729 71 0 20 chr1 121793865 121793966 -75401466 - B1_Mus2 SINE Alu 0 147 49 6 1514 245 266 0 99 chr1 121793910 121793981 -75401451 - MT2B LTR ERVL -344 257 194 6 1514 902 138 13 27 chr1 121794705 121794854 -75400578 + B1_Mus2 SINE Alu 1 147 0 6 1514 306 131 82 0 chr1 121794946 121795007 -75400425 - B1_Mur2 SINE Alu -38 111 46 6 1514 596 126 42 0 chr1 121795001 121795096 -75400336 + ORR1B2 LTR MaLR 269 367 0 6 1514 782 276 124 8 chr1 121795096 121795336 -75400096 + ORR1E LTR MaLR 92 359 0 6 1514 578 248 47 27 chr1 121795564 121795713 -75399719 - B4A SINE B4 -140 152 1 6 1514 238 273 0 0 chr1 121796180 121796235 -75399197 + L2b LINE L2 3305 3359 -16 6 1514 242 302 93 59 chr1 121796327 121796605 -75398827 - L2b LINE L2 -25 3362 3070 6 1514 204 200 0 0 chr1 121796704 121796749 -75398683 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1514 696 313 81 22 chr1 121796766 121797037 -75398395 - B4A SINE B4 0 292 6 6 1514 240 173 107 4 chr1 121797287 121797359 -75398073 + MIR SINE MIR 65 149 -119 6 1514 5075 168 13 15 chr1 121797689 121798548 -75396884 - RMER13A LTR ERVK 0 860 4 6 1514 357 222 65 22 chr1 121798589 121798681 -75396751 + RSINE1 SINE B4 3 98 -67 6 1514 352 221 0 0 chr1 121798669 121798737 -75396695 - B4 SINE B4 -223 69 2 6 1514 334 302 69 8 chr1 121799770 121799900 -75395532 + ORR1E LTR MaLR 55 192 -167 6 1514 416 238 109 16 chr1 121799909 121800037 -75395395 - MTE2a LTR MaLR -2 377 238 6 1514 1156 239 30 60 chr1 121800037 121800304 -75395128 - ORR1D2 LTR MaLR 0 370 112 6 1514 1322 234 166 63 chr1 121800296 121800791 -75394641 + MT2B LTR ERVL 6 540 -61 6 1514 477 0 0 0 chr1 121800791 121800844 -75394588 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1514 567 0 0 0 chr1 121800849 121800912 -75394520 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 1514 1322 234 166 63 chr1 121800912 121800947 -75394485 + MT2B LTR ERVL 561 595 -6 6 1514 255 187 173 0 chr1 121800952 121801027 -75394405 - ORR1D2 LTR MaLR -241 88 1 6 1514 416 279 69 8 chr1 121801114 121801244 -75394188 - MTD LTR MaLR -263 156 19 7 1514 239 272 20 61 chr1 121801293 121801391 -75394041 + ORR1E LTR MaLR 249 342 -37 6 1514 204 269 0 0 chr1 121801402 121801456 -75393976 - L2b LINE L2 -1 3386 3329 7 1514 250 294 0 0 chr1 121801457 121801542 -75393890 + GA-rich Low_complexity Low_complexity 3 87 0 7 1514 802 311 35 28 chr1 121801611 121801707 -75393725 + B4A SINE B4 2 105 -187 7 1514 1097 215 4 49 chr1 121801707 121801932 -75393500 + B3 SINE B2 1 215 -1 7 1514 802 311 35 28 chr1 121801932 121802120 -75393312 + B4A SINE B4 106 287 -5 7 1514 1248 215 84 64 chr1 121802188 121802257 -75393175 + MTD LTR MaLR 50 116 -303 7 1514 1219 48 0 7 chr1 121802257 121802404 -75393028 - B1_Mus2 SINE Alu 0 147 2 7 1514 1248 215 84 64 chr1 121802404 121802677 -75392755 + MTD LTR MaLR 117 399 -20 7 1514 341 280 32 0 chr1 121802684 121802777 -75392655 - MLT1A1 LTR MaLR -312 96 1 7 1514 199 335 86 75 chr1 121802875 121803049 -75392383 + L2b LINE L2 3104 3279 -96 7 1514 850 231 42 31 chr1 121803236 121803428 -75392004 - B3A SINE B2 -2 196 3 7 1514 207 69 0 0 chr1 121803493 121803522 -75391910 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1514 843 245 104 19 chr1 121803534 121803841 -75391591 - B4 SINE B4 -9 283 1 7 1514 450 0 0 0 chr1 121804180 121804230 -75391202 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1514 272 27 27 0 chr1 121804233 121804270 -75391162 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 1514 225 309 134 31 chr1 121804613 121804740 -75390692 - B1_Mus1 SINE Alu -2 146 7 7 1514 431 268 82 0 chr1 121804743 121804840 -75390592 - PB1D10 SINE Alu -1 116 12 7 1514 744 257 126 59 chr1 121805405 121805770 -75389662 + MTD LTR MaLR 1 419 0 7 1514 186 265 167 56 chr1 121806344 121806488 -75388944 - MIRb SINE MIR -83 185 26 7 1514 188 315 19 0 chr1 121807892 121807946 -75387486 - MIR SINE MIR -11 251 197 7 1514 521 282 173 67 chr1 121807946 121808258 -75387174 - MER2 DNA MER2_type 0 345 1 7 1514 481 307 250 15 chr1 121808337 121808605 -75386827 - MER2 DNA MER2_type -14 331 1 7 1514 248 277 30 15 chr1 121808987 121809053 -75386379 + MLT1A LTR MaLR 265 331 -43 7 1514 242 29 0 28 chr1 121809493 121809529 -75385903 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 7 1514 1261 34 7 0 chr1 121810130 121810276 -75385156 + B1_Mm SINE Alu 1 147 0 7 1514 980 254 4 73 chr1 121810401 121810673 -75384759 - B4 SINE B4 -30 262 10 7 1514 207 0 0 0 chr1 121811006 121811029 -75384403 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1514 808 181 15 0 chr1 121811029 121811162 -75384270 - B1_Mur4 SINE Alu -10 140 6 7 1514 256 354 53 107 chr1 121811218 121811301 -75384131 - MLT2B4 LTR ERVL -1 555 461 7 1514 314 220 0 0 chr1 121811301 121811360 -75384072 + PB1D9 SINE Alu 5 63 -57 7 1514 256 354 53 107 chr1 121811360 121811537 -75383895 - MLT2B4 LTR ERVL -1 460 254 7 1514 312 265 88 7 chr1 121811863 121812000 -75383432 + Lx8 LINE L1 7087 7234 -239 7 1514 334 241 44 33 chr1 121812000 121812090 -75383342 + RMER15 LTR ERVL 371 461 -114 7 1514 1204 55 7 0 chr1 121812143 121812288 -75383144 + B1_Mus2 SINE Alu 2 147 0 7 1514 192 77 0 0 chr1 121812288 121812314 -75383118 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1514 2645 172 64 8 chr1 121812495 121812994 -75382438 - RLTR24 LTR ERV1 0 529 3 7 1514 216 216 0 0 chr1 121813087 121813138 -75382294 + (TATG)n Simple_repeat Simple_repeat 4 54 0 7 1514 642 330 27 41 chr1 121813147 121813441 -75381991 - B4A SINE B4 -2 290 1 7 1514 222 37 0 0 chr1 121813643 121813670 -75381762 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1514 453 224 42 33 chr1 121813842 121813962 -75381470 - RLTR14 LTR ERV1 -16 366 246 7 1514 2850 179 19 60 chr1 121814383 121814952 -75380480 + RMER20B LTR ERVK 1 546 -81 7 1514 747 201 36 0 chr1 121815163 121815302 -75380130 - B1_Mur1 SINE Alu 0 149 6 7 1514 354 293 58 84 chr1 121815204 121815394 -75380038 - MT2B LTR ERVL -344 257 73 7 1514 323 219 41 0 chr1 121816142 121816215 -75379217 - ID SINE ID -145 79 4 7 1514 324 48 0 0 chr1 121816448 121816490 -75378942 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1514 897 205 15 89 chr1 121816532 121816735 -75378697 + MTEb LTR MaLR 3 190 -189 7 1514 329 266 93 74 chr1 121816741 121816956 -75378476 + RLTR12B LTR ERVK 9 227 -301 7 1514 300 279 129 29 chr1 121816925 121817016 -75378416 + RLTR15 LTR ERVK 85 179 -180 7 1514 396 0 0 0 chr1 121817016 121817060 -75378372 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1514 300 279 129 29 chr1 121817060 121817208 -75378224 + RLTR15 LTR ERVK 180 347 -12 7 1514 4376 119 84 19 chr1 121817607 121818299 -75377133 - RMER19A LTR ERVK 0 737 1 7 1514 338 272 38 19 chr1 121818315 121818420 -75377012 + RLTR23 LTR ERV1 324 430 0 7 1514 917 170 19 109 chr1 121818444 121818655 -75376777 + MTEb LTR MaLR 182 373 -6 7 1514 468 91 0 0 chr1 121818660 121818726 -75376706 + (CATA)n Simple_repeat Simple_repeat 2 67 0 7 1514 2329 114 6 0 chr1 121818752 121819076 -75376356 - ORR1A3 LTR MaLR 0 326 1 7 1514 1299 230 28 21 chr1 121819537 121819826 -75375606 - B4 SINE B4 -1 291 1 7 1514 327 227 53 0 chr1 121820259 121820334 -75375098 + RSINE1 SINE B4 5 83 -82 7 1514 367 295 10 10 chr1 121820408 121820504 -75374928 + RSINE1 SINE B4 2 97 -68 7 1514 444 19 0 0 chr1 121820506 121820559 -75374873 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1514 1256 48 0 0 chr1 121820578 121820725 -75374707 - B1_Mus1 SINE Alu 0 148 2 7 1514 673 23 0 0 chr1 121820785 121820871 -75374561 - L1Md_A LINE L1 0 6582 6497 7 1514 946 209 113 143 chr1 121821231 121821439 -75373993 - B4A SINE B4 0 292 91 7 1514 814 165 53 0 chr1 121821439 121821572 -75373860 - B1_Mur2 SINE Alu -5 144 5 7 1514 946 209 113 143 chr1 121821572 121821586 -75373846 - B4A SINE B4 -202 90 81 7 1514 324 64 0 0 chr1 121821586 121821633 -75373799 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 7 1514 946 209 113 143 chr1 121821633 121821710 -75373722 - B4A SINE B4 -212 80 1 7 1514 473 277 37 53 chr1 121821719 121821746 -75373686 - B2_Mm2 SINE B2 -10 185 162 7 1514 450 0 0 0 chr1 121821746 121821796 -75373636 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1514 638 248 83 2 chr1 121821796 121821955 -75373477 - B3A SINE B2 -30 168 2 7 1514 314 361 36 81 chr1 121822413 121822660 -75372772 + L1M5 LINE L1 2644 2879 -3267 7 1514 210 91 0 0 chr1 121823040 121823073 -75372359 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1514 472 311 107 46 chr1 121823093 121823309 -75372123 - B4A SINE B4 -40 252 24 7 1514 267 328 32 16 chr1 121823387 121823511 -75371921 + MLT1A0 LTR MaLR 21 146 -262 7 1514 315 141 0 0 chr1 121823618 121823682 -75371750 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 7 1514 282 125 21 0 chr1 121823833 121823881 -75371551 - B3 SINE B2 -165 51 3 7 1514 426 266 11 0 chr1 121823882 121823976 -75371456 - B4A SINE B4 -196 96 2 7 1514 882 243 9 47 chr1 121824365 121824598 -75370834 - ID_B1 SINE B4 0 224 1 7 1514 220 246 0 34 chr1 121824603 121824662 -75370770 + (TATG)n Simple_repeat Simple_repeat 4 60 0 7 1514 748 296 43 28 chr1 121824683 121824965 -75370467 - B4A SINE B4 -4 288 3 7 1514 376 229 0 14 chr1 121825310 121825381 -75370051 + MLT1A0 LTR MaLR 197 266 -99 7 1514 873 237 72 0 chr1 121825551 121825758 -75369674 - ID_B1 SINE B4 0 224 3 7 1514 986 228 161 34 chr1 121826170 121826461 -75368971 + MTE2a LTR MaLR 52 379 0 7 1514 694 284 25 107 chr1 121826700 121826944 -75368488 + B4A SINE B4 2 225 -67 7 1514 22 0 0 0 chr1 121826946 121826968 -75368464 + AT_rich Low_complexity Low_complexity 1 22 0 7 1514 261 0 0 0 chr1 121827054 121827083 -75368349 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1514 198 0 0 0 chr1 121827083 121827104 -75368328 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 1514 387 0 0 0 chr1 121827170 121827213 -75368219 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1514 384 71 0 0 chr1 121827213 121827269 -75368163 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1514 1192 274 15 15 chr1 121827609 121827935 -75367497 + MTEa LTR MaLR 1 377 -2 7 1514 288 0 0 0 chr1 121828316 121828348 -75367084 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1514 414 0 0 0 chr1 121828348 121828393 -75367039 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1514 819 255 120 0 chr1 121828444 121828636 -75366796 - B4A SINE B4 -77 215 1 7 1514 249 296 10 39 chr1 121828978 121829080 -75366352 + (TATG)n Simple_repeat Simple_repeat 4 102 0 7 1514 511 255 28 108 chr1 121829083 121829259 -75366173 - RSINE1 SINE B4 0 165 4 7 1514 847 233 50 45 chr1 121829876 121830078 -75365354 - MTE2a LTR MaLR 0 379 177 7 1514 850 268 23 5 chr1 121830105 121830319 -75365113 + ID_B1 SINE B4 2 219 -5 7 1514 506 306 7 39 chr1 121830330 121830483 -75364949 + B3A SINE B2 15 162 -36 7 1514 194 0 0 37 chr1 121830538 121830565 -75364867 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1514 611 241 172 16 chr1 121830842 121831028 -75364404 - B3 SINE B2 0 216 2 7 1514 875 272 50 58 chr1 121831248 121831672 -75363760 + RMER15 LTR ERVL 1 542 -33 7 1514 982 144 0 7 chr1 121831897 121832044 -75363388 + B1_Mus1 SINE Alu 3 148 0 7 1514 206 233 0 0 chr1 121832044 121832087 -75363345 + GA-rich Low_complexity Low_complexity 2 44 0 7 1514 538 226 48 62 chr1 121832316 121832335 -75363097 + B4 SINE B4 74 217 -75 7 1514 982 55 24 0 chr1 121832335 121832462 -75362970 + B1_Mus2 SINE Alu 9 138 -9 7 1514 189 0 0 0 chr1 121832462 121832483 -75362949 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1514 468 287 65 0 chr1 121832501 121832609 -75362823 + RSINE1 SINE B4 36 150 -15 7 1514 1507 292 37 39 chr1 121832992 121833455 -75361977 + MT2A LTR ERVL 1 462 -71 7 1514 372 156 33 0 chr1 121834120 121834210 -75361222 + (CA)n Simple_repeat Simple_repeat 1 93 0 8 1514 414 249 35 23 chr1 121834291 121834464 -75360968 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1514 280 242 48 8 chr1 121834475 121834600 -75360832 + (CA)n Simple_repeat Simple_repeat 2 131 0 8 1514 284 64 0 21 chr1 121834600 121834648 -75360784 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 8 1514 348 24 0 0 chr1 121834851 121834892 -75360540 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1514 1226 183 24 0 chr1 121834946 121835154 -75360278 - ID_B1 SINE B4 -8 216 4 8 1514 291 54 0 0 chr1 121835177 121835214 -75360218 + (CTAA)n Simple_repeat Simple_repeat 2 38 0 8 1514 765 175 22 0 chr1 121835219 121835356 -75360076 - B1_Mur3 SINE Alu -7 142 3 8 1514 424 248 163 52 chr1 121835422 121835575 -75359857 - B3A SINE B2 0 198 29 8 1514 450 0 0 0 chr1 121835999 121836049 -75359383 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1514 471 261 285 9 chr1 121836124 121836352 -75359080 - B4 SINE B4 -1 291 1 8 1514 425 320 21 47 chr1 121836619 121836809 -75358623 + MLT1D LTR MaLR 1 185 -320 8 1514 30551 64 4 0 chr1 121836817 121840720 -75354712 + L1Md_F2 LINE L1 1671 5586 -297 8 1514 8350 41 1 0 chr1 121840720 121841703 -75353729 + L1Md_F2 LINE L1 5587 6570 -12 8 1514 685 281 36 47 chr1 121841890 121842166 -75353266 - B4 SINE B4 -18 274 2 8 1514 637 297 123 35 chr1 121843007 121843234 -75352198 - B4A SINE B4 0 292 46 8 1514 1050 269 73 77 chr1 121843368 121843835 -75351597 + L1MB7 LINE L1 5606 6070 -114 8 1514 360 241 82 18 chr1 121843925 121844035 -75351397 + PB1D10 SINE Alu 1 117 0 8 1514 378 0 0 0 chr1 121844075 121844117 -75351315 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1514 473 206 194 77 chr1 121844216 121844482 -75350950 + MTC LTR MaLR 57 407 -14 8 1514 22 0 0 0 chr1 121844553 121844575 -75350857 + GC_rich Low_complexity Low_complexity 1 22 0 8 1514 336 270 99 0 chr1 121844819 121844930 -75350502 + PB1 SINE Alu 2 123 -4 8 1514 302 288 62 12 chr1 121844937 121845018 -75350414 + RSINE1 SINE B4 1 85 -80 8 1514 338 200 36 48 chr1 121845004 121845088 -75350344 - B3 SINE B2 -131 85 3 8 1514 538 217 85 0 chr1 121845154 121845260 -75350172 - B4 SINE B4 -173 119 5 8 1514 791 268 76 54 chr1 121845302 121845578 -75349854 + MTD LTR MaLR 1 282 -137 8 1514 273 183 16 16 chr1 121845582 121845643 -75349789 - ERVL-B4-int LTR ERVL -1205 4509 4449 8 1514 328 235 22 56 chr1 121845653 121845743 -75349689 + MTD LTR MaLR 288 374 -45 8 1514 242 29 0 28 chr1 121845743 121845779 -75349653 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1514 989 140 196 0 chr1 121845783 121845962 -75349470 + B3 SINE B2 2 215 -1 8 1514 591 155 0 46 chr1 121846500 121846608 -75348824 - ID_B1 SINE B4 -12 212 110 8 1514 440 224 74 41 chr1 121846608 121846621 -75348811 - B1F SINE Alu -12 137 13 8 1514 321 211 62 62 chr1 121846665 121846761 -75348671 - RMER30 DNA MER1_type -101 101 6 8 1514 601 276 34 6 chr1 121846761 121846936 -75348496 + B3A SINE B2 1 180 -18 8 1514 717 162 0 0 chr1 121847261 121847434 -75347998 + CT-rich Low_complexity Low_complexity 2 174 0 8 1514 753 260 91 29 chr1 121847912 121848122 -75347310 + B4 SINE B4 2 224 -68 8 1514 276 30 0 0 chr1 121848161 121848194 -75347238 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 8 1514 1135 69 14 0 chr1 121848194 121848339 -75347093 - B1_Mus2 SINE Alu 0 147 1 8 1514 1257 93 66 0 chr1 121848339 121848521 -75346911 - B2_Mm2 SINE B2 0 195 1 8 1514 369 0 0 0 chr1 121848525 121848566 -75346866 + (TATG)n Simple_repeat Simple_repeat 3 43 0 8 1514 1268 70 0 0 chr1 121848567 121848723 -75346709 - B2_Mm2 SINE B2 -37 158 3 8 1514 601 199 132 36 chr1 121848722 121848740 -75346692 + B3 SINE B2 32 149 -67 8 1514 355 297 94 94 chr1 121848740 121848837 -75346595 + B4 SINE B4 70 179 -113 8 1514 297 0 0 0 chr1 121848837 121848870 -75346562 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1514 601 199 132 36 chr1 121848870 121848921 -75346511 + B3 SINE B2 150 213 -3 8 1514 355 297 94 94 chr1 121848921 121848995 -75346437 + B4 SINE B4 180 291 -1 8 1514 420 291 0 0 chr1 121849009 121849167 -75346265 + (CA)n Simple_repeat Simple_repeat 1 158 0 8 1514 234 270 16 0 chr1 121849215 121849278 -75346154 + L1MB5 LINE L1 5491 5554 -626 8 1514 388 235 41 25 chr1 121849293 121849415 -75346017 + L1MB5 LINE L1 5774 5897 -277 8 1514 372 94 0 0 chr1 121849618 121849671 -75345761 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 8 1514 374 0 22 0 chr1 121850663 121850709 -75344723 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1514 638 175 130 12 chr1 121850892 121851054 -75344378 - B2_Mm2 SINE B2 -6 189 9 8 1514 312 200 0 0 chr1 121851193 121851258 -75344174 + (TA)n Simple_repeat Simple_repeat 1 65 0 8 1514 386 248 147 31 chr1 121851346 121851475 -75343957 - RSINE1 SINE B4 0 165 22 8 1514 247 316 26 0 chr1 121851717 121851793 -75343639 - ID4 SINE ID -2 81 4 8 1514 458 281 0 9 chr1 121851837 121851952 -75343480 - PB1D10 SINE Alu -1 116 3 8 1514 758 260 40 20 chr1 121851997 121852197 -75343235 + ID_B1 SINE B4 1 204 -20 8 1514 335 23 23 0 chr1 121852421 121852465 -75342967 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 8 1514 1578 199 4 0 chr1 121852474 121852751 -75342681 - MTEa LTR MaLR 0 379 102 8 1514 4635 82 56 20 chr1 121853066 121853776 -75341656 + RMER17A LTR ERVK 1 736 -15 8 1514 689 250 133 21 chr1 121853900 121854133 -75341299 + B4A SINE B4 32 290 -2 8 1514 192 40 0 0 chr1 121854744 121854769 -75340663 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 8 1514 612 197 190 0 chr1 121854775 121854912 -75340520 + ID_B1 SINE B4 12 174 -50 8 1514 272 263 79 0 chr1 121854849 121854925 -75340507 + PB1D9 SINE Alu 31 112 -8 8 1514 431 310 43 49 chr1 121854939 121855102 -75340330 + RSINE1 SINE B4 2 163 -2 8 1514 227 152 22 0 chr1 121855313 121855359 -75340073 + (CAA)n Simple_repeat Simple_repeat 2 48 0 8 1514 494 198 137 38 chr1 121855376 121855507 -75339925 + B3A SINE B2 3 146 -52 8 1514 459 0 0 0 chr1 121855507 121855558 -75339874 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1514 723 226 123 19 chr1 121856430 121856691 -75338741 - B4A SINE B4 -4 288 1 8 1514 252 250 0 0 chr1 121856784 121856844 -75338588 - L1MA6 LINE L1 -308 5992 5933 8 1514 21 0 0 0 chr1 121856849 121856870 -75338562 + AT_rich Low_complexity Low_complexity 1 21 0 8 1514 605 218 16 0 chr1 121856880 121857004 -75338428 - B1_Mur2 SINE Alu -22 127 2 8 1514 228 243 22 201 chr1 121857004 121857109 -75338323 - MT2B LTR ERVL -343 258 178 8 1514 339 244 137 61 chr1 121857061 121857192 -75338240 - ID_B1 SINE B4 -82 142 2 8 1514 243 140 0 107 chr1 121857599 121857655 -75337777 + MIRc SINE MIR 99 148 -120 8 1514 279 114 0 0 chr1 121857852 121857896 -75337536 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1514 1342 228 39 13 chr1 121857914 121858225 -75337207 + MTEb LTR MaLR 6 324 -55 8 1514 230 203 94 52 chr1 121858217 121858430 -75337002 + RMER17D2 LTR ERVK 326 547 -262 8 1514 281 279 0 0 chr1 121858708 121858769 -75336663 - ID_B1 SINE B4 -4 220 160 8 1514 1253 245 68 42 chr1 121858769 121859076 -75336356 - MTE2a LTR MaLR 0 379 65 8 1514 2950 106 63 22 chr1 121859076 121859522 -75335910 - Lx3C LINE L1 -69 6907 6444 8 1514 420 111 0 0 chr1 121859761 121859824 -75335608 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1514 207 0 0 0 chr1 121859824 121859846 -75335586 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1514 995 257 70 21 chr1 121859847 121860089 -75335343 - MTEa LTR MaLR -102 277 24 8 1514 980 259 144 25 chr1 121860090 121860443 -75334989 + Lx8 LINE L1 7067 7461 -12 8 1514 193 57 57 0 chr1 121860964 121860999 -75334433 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1514 1000 248 49 29 chr1 121861007 121861252 -75334180 - B4A SINE B4 -42 250 1 8 1514 315 49 0 0 chr1 121861376 121861417 -75334015 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 8 1514 611 287 52 19 chr1 121861421 121861634 -75333798 - ID_B1 SINE B4 -3 221 2 8 1514 1727 200 63 76 chr1 121861989 121862379 -75333053 + MTE2b LTR MaLR 1 356 -23 8 1514 382 20 0 0 chr1 121863128 121863179 -75332253 - L1_Mus1 LINE L1 0 6567 6517 8 1514 391 253 0 12 chr1 121863189 121863269 -75332163 - B3A SINE B2 -119 79 1 8 1514 432 118 0 0 chr1 121863298 121863366 -75332066 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1514 314 200 17 0 chr1 121863408 121863468 -75331964 + MTE2a LTR MaLR 1 61 -318 8 1514 402 198 24 24 chr1 121863458 121863541 -75331891 - PB1D9 SINE Alu -37 83 1 8 1514 467 180 11 22 chr1 121863674 121863765 -75331667 + MTE2a LTR MaLR 288 377 -2 8 1514 489 248 36 107 chr1 121863765 121863823 -75331609 + ID SINE ID 35 82 -142 8 1514 496 252 0 9 chr1 121863823 121863939 -75331493 + PB1D10 SINE Alu 2 116 -1 8 1514 468 252 149 46 chr1 121863951 121864213 -75331219 + B4A SINE B4 4 292 0 8 1514 301 179 0 51 chr1 121864249 121864308 -75331124 + HAL1-3A_ME LINE L1 1975 2030 -828 8 1514 519 208 0 0 chr1 121864308 121864428 -75331004 + (CA)n Simple_repeat Simple_repeat 2 121 0 8 1514 737 180 173 6 chr1 121864822 121864995 -75330437 + ID_B1 SINE B4 5 206 -18 8 1514 538 122 10 10 chr1 121865004 121865103 -75330329 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 8 1514 472 275 27 27 chr1 121865414 121865526 -75329906 + B4 SINE B4 2 113 -179 8 1514 324 0 0 0 chr1 121865594 121865630 -75329802 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1514 301 210 183 12 chr1 121865754 121865836 -75329596 + MLT1A0 LTR MaLR 214 309 -56 8 1514 22 56 0 0 chr1 121865928 121865964 -75329468 + AT_rich Low_complexity Low_complexity 1 36 0 8 1514 180 152 0 0 chr1 121866281 121866314 -75329118 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1514 302 257 79 26 chr1 121866410 121866486 -75328946 + ID SINE ID 6 85 -139 9 1514 271 283 123 7 chr1 121866504 121866650 -75328782 - L1MB3 LINE L1 -30 6153 5991 9 1514 800 245 87 42 chr1 121866760 121867024 -75328408 + B4 SINE B4 1 276 -16 9 1514 423 0 0 0 chr1 121867057 121867104 -75328328 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1514 830 164 286 5 chr1 121867691 121867911 -75327521 - Lx9 LINE L1 -1 7643 7362 9 1514 444 249 341 12 chr1 121868046 121868213 -75327219 + ID_B1 SINE B4 3 224 0 9 1514 324 143 0 0 chr1 121868689 121868745 -75326687 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1514 545 288 34 20 chr1 121868746 121868895 -75326537 - B4 SINE B4 -134 158 8 9 1514 285 183 0 0 chr1 121869505 121869565 -75325867 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1514 907 284 35 0 chr1 121869589 121869786 -75325646 - B4 SINE B4 -8 284 81 9 1514 703 212 126 16 chr1 121869784 121869977 -75325455 - ORR1D1 LTR MaLR -84 295 52 9 1514 416 217 32 11 chr1 121869984 121870077 -75325355 - B4 SINE B4 -195 97 3 9 1514 1486 236 58 17 chr1 121870755 121871100 -75324332 - MTEa LTR MaLR -16 363 5 9 1514 710 226 7 0 chr1 121871214 121871351 -75324081 - ID_B1 SINE B4 -3 221 84 9 1514 931 234 130 4 chr1 121871568 121871821 -75323611 - B4A SINE B4 -2 290 6 9 1514 976 294 19 118 chr1 121872366 121872798 -75322634 + MTC LTR MaLR 18 406 -15 9 1514 437 220 1 23 chr1 121872930 121873027 -75322405 + B4 SINE B4 1 96 -69 9 1514 913 197 196 30 chr1 121873175 121873405 -75322027 + MTEa LTR MaLR 58 325 -54 9 1514 228 100 0 0 chr1 121873609 121873649 -75321783 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 9 1514 619 268 124 64 chr1 121874535 121874818 -75320614 + ORR1E LTR MaLR 51 350 -9 9 1514 26 30 0 0 chr1 121874906 121874939 -75320493 + AT_rich Low_complexity Low_complexity 1 33 0 9 1514 443 311 38 0 chr1 121874955 121875087 -75320345 - RSINE1 SINE B4 -14 151 15 9 1514 1199 244 62 23 chr1 121875283 121875543 -75319889 + B4 SINE B4 2 271 -21 9 1514 369 0 0 0 chr1 121875551 121875592 -75319840 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1514 215 228 18 0 chr1 121876081 121876138 -75319294 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1514 462 298 19 73 chr1 121876146 121876244 -75319188 - B4A SINE B4 -8 284 188 9 1514 1572 198 81 141 chr1 121876244 121876543 -75318889 - MTD LTR MaLR 0 419 122 9 1514 1196 62 7 0 chr1 121876543 121876688 -75318744 + B1_Mus1 SINE Alu 3 148 0 9 1514 1572 198 81 141 chr1 121876688 121876834 -75318598 - MTD LTR MaLR -298 121 1 9 1514 462 298 19 73 chr1 121876834 121876941 -75318491 - B4A SINE B4 -105 187 90 9 1514 5764 144 61 38 chr1 121876946 121877823 -75317609 + RLTR25A LTR ERVK 26 901 -202 9 1514 369 0 0 0 chr1 121877823 121877864 -75317568 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1514 5764 144 61 38 chr1 121877864 121878040 -75317392 + RLTR25A LTR ERVK 902 1103 0 9 1514 545 244 122 0 chr1 121878073 121878237 -75317195 - B3A SINE B2 -14 184 1 9 1514 351 78 0 0 chr1 121878524 121878575 -75316857 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1514 492 294 224 41 chr1 121878600 121878845 -75316587 - B4 SINE B4 -2 290 1 9 1514 1300 100 5 31 chr1 121878892 121879088 -75316344 + B2_Mm1a SINE B2 2 192 -1 9 1514 1423 273 71 77 chr1 121879407 121879911 -75315521 + RCHARR1 DNA MER1_type 16 516 -458 9 1514 489 309 156 33 chr1 121879937 121880148 -75315284 - B4A SINE B4 0 292 56 9 1514 230 179 0 0 chr1 121880363 121880402 -75315030 - ID_B1 SINE B4 -52 172 134 9 1514 998 224 78 19 chr1 121881780 121882048 -75313384 + B4A SINE B4 2 285 -7 9 1514 279 0 0 0 chr1 121882091 121882122 -75313310 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1514 195 69 0 0 chr1 121882127 121882156 -75313276 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 9 1514 229 225 127 28 chr1 121882194 121882336 -75313096 - MER63C DNA AcHobo -43 887 732 9 1514 772 264 11 17 chr1 121882377 121882554 -75312878 + B3A SINE B2 2 177 -21 9 1514 518 246 52 7 chr1 121882569 121882704 -75312728 + B3 SINE B2 72 212 -4 9 1514 23 0 0 0 chr1 121883082 121883105 -75312327 + AT_rich Low_complexity Low_complexity 1 23 0 9 1514 1593 213 98 27 chr1 121884045 121884455 -75310977 - Lx8 LINE L1 -158 7315 6877 9 1514 227 368 0 0 chr1 121884669 121884745 -75310687 - L2a LINE L2 -18 3408 3333 9 1514 464 291 58 32 chr1 121884801 121884989 -75310443 - B3A SINE B2 -3 195 3 9 1514 342 224 53 0 chr1 121885586 121885662 -75309770 - B4 SINE B4 0 292 213 9 1514 796 210 16 16 chr1 121885739 121885943 -75309489 - B4 SINE B4 -88 204 1 9 1514 213 65 0 0 chr1 121886307 121886338 -75309094 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 9 1514 360 252 99 80 chr1 121886338 121886489 -75308943 - B3 SINE B2 -62 154 1 9 1514 795 231 18 185 chr1 121886564 121886805 -75308627 - B4 SINE B4 -8 284 85 9 1514 1284 106 0 0 chr1 121886805 121887362 -75308070 + (CTG)n Simple_repeat Simple_repeat 1 557 0 9 1514 795 231 18 185 chr1 121887362 121887456 -75307976 - B4 SINE B4 -208 84 4 9 1514 2229 152 66 15 chr1 121887521 121887915 -75307517 - MTC LTR MaLR -5 416 3 9 1514 318 255 117 78 chr1 121888309 121888590 -75306842 - B4A SINE B4 0 292 1 9 1514 801 82 0 0 chr1 121888809 121888919 -75306513 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 9 1514 1017 202 18 23 chr1 121888919 121889137 -75306295 - ID_B1 SINE B4 -5 219 3 9 1514 636 252 137 142 chr1 121889333 121889444 -75305988 + MTE2a LTR MaLR 6 87 -332 9 1514 2370 111 8 8 chr1 121889444 121889799 -75305633 + RLTR15 LTR ERVK 1 355 -4 9 1514 1198 188 125 45 chr1 121889799 121890100 -75305332 + MTE2a LTR MaLR 58 405 -14 9 1514 37 52 0 0 chr1 121890333 121890391 -75305041 + AT_rich Low_complexity Low_complexity 1 58 0 9 1514 248 0 31 0 chr1 121890837 121890869 -75304563 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1514 908 226 118 30 chr1 121890877 121891114 -75304318 - B4 SINE B4 -34 258 1 9 1514 792 269 5 25 chr1 121891232 121891434 -75303998 + B3A SINE B2 1 198 0 9 1514 22 0 0 0 chr1 121891434 121891456 -75303976 + AT_rich Low_complexity Low_complexity 1 22 0 9 1514 794 268 138 56 chr1 121892165 121892521 -75302911 - MTD LTR MaLR 0 419 35 9 1514 588 239 7 56 chr1 121892943 121893085 -75302347 - RSINE1 SINE B4 -29 136 2 9 1514 357 235 147 25 chr1 121894286 121894443 -75300989 - Lx8 LINE L1 -2 7471 7296 9 1514 1458 244 94 23 chr1 121894429 121894907 -75300525 - Lx8 LINE L1 -323 7150 6639 9 1514 237 287 94 47 chr1 121895189 121895295 -75300137 + B3A SINE B2 1 111 -87 9 1514 1235 253 31 11 chr1 121895656 121895974 -75299458 - MTEa LTR MaLR 0 379 24 9 1514 372 377 0 20 chr1 121895851 121896000 -75299432 - MT2A LTR ERVL -387 146 1 9 1514 1192 259 7 14 chr1 121896158 121896452 -75298980 - B4 SINE B4 0 292 1 9 1514 310 300 25 0 chr1 121896502 121896582 -75298850 + MER5A1 DNA MER1_type 50 131 -35 9 1514 971 83 12 111 chr1 121896585 121896747 -75298685 + B1_Mus2 SINE Alu 2 147 0 9 1515 520 167 64 193 chr1 121897394 121897565 -75297867 - MTE2b LTR MaLR -210 169 21 9 1515 246 192 187 27 chr1 121897504 121897579 -75297853 - MT2A LTR ERVL -446 87 1 9 1515 753 271 6 24 chr1 121897746 121897916 -75297516 + B3 SINE B2 37 203 -13 9 1515 225 154 0 0 chr1 121897928 121897967 -75297465 + (TA)n Simple_repeat Simple_repeat 2 40 0 9 1515 201 68 44 22 chr1 121898012 121898057 -75297375 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 1515 761 156 262 0 chr1 121898057 121898217 -75297215 - B3 SINE B2 -14 202 1 9 1515 360 0 0 0 chr1 121898373 121898413 -75297019 + (CTAAA)n Simple_repeat Simple_repeat 3 42 0 9 1515 436 305 42 14 chr1 121898473 121898616 -75296816 - RSINE1 SINE B4 -12 153 7 9 1515 267 103 0 0 chr1 121898686 121898725 -75296707 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 9 1515 311 351 54 8 chr1 121898893 121899025 -75296407 - MIRc SINE MIR -102 166 18 9 1515 378 0 0 0 chr1 121899038 121899080 -75296352 + (TATG)n Simple_repeat Simple_repeat 2 43 0 9 1515 681 259 62 7 chr1 121899096 121899240 -75296192 - RSINE1 SINE B4 -11 154 3 9 1515 1150 269 26 50 chr1 121899850 121899901 -75295531 - MT2A LTR ERVL -2 599 545 9 1515 267 31 0 0 chr1 121899901 121899933 -75295499 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 9 1515 1163 194 67 105 chr1 121899933 121900355 -75295077 - MT2A LTR ERVL -57 544 9 9 1515 635 315 89 123 chr1 121900886 121901179 -75294253 - B4 SINE B4 -6 286 4 9 1515 190 273 18 0 chr1 121901410 121901465 -75293967 + MIRm SINE MIR 220 275 -1 9 1515 1526 210 10 3 chr1 121901649 121901941 -75293491 + MTE2b LTR MaLR 81 374 -5 9 1515 553 280 42 24 chr1 121902080 121902260 -75293172 + ID_B1 SINE B4 67 249 -43 9 1515 1017 256 94 19 chr1 121902466 121902733 -75292699 + B4A SINE B4 2 288 -4 9 1515 212 250 21 0 chr1 121903080 121903128 -75292304 + ID_B1 SINE B4 49 97 -127 9 1515 457 268 26 70 chr1 121903219 121903333 -75292099 + PB1D10 SINE Alu 1 107 -10 9 1515 432 0 0 0 chr1 121903341 121903389 -75292043 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 9 1515 306 271 122 0 chr1 121904881 121904988 -75290444 - MIR3 SINE MIR -53 155 36 9 1515 599 305 0 53 chr1 121905542 121905729 -75289703 - B4 SINE B4 0 292 116 9 1515 382 136 0 0 chr1 121905776 121905835 -75289597 + B3 SINE B2 148 206 -10 9 1515 1008 276 62 50 chr1 121905893 121906332 -75289100 - Lx8 LINE L1 -31 7442 6999 9 1515 732 198 192 0 chr1 121906391 121906573 -75288859 - ID_B1 SINE B4 -1 223 7 9 1515 411 356 96 30 chr1 121906577 121906774 -75288658 - MER20 DNA MER1_type -9 210 1 9 1515 486 33 0 0 chr1 121906905 121906965 -75288467 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1515 1033 280 11 18 chr1 121906969 121907249 -75288183 - B4 SINE B4 -14 278 1 1 1515 373 290 105 50 chr1 121907309 121907567 -75287865 + ORR1E LTR MaLR 88 359 0 1 1515 213 167 333 0 chr1 121908364 121908412 -75287020 + ID2 SINE ID 1 64 -19 1 1515 739 286 126 19 chr1 121908376 121908543 -75286889 + B4 SINE B4 30 215 -77 1 1515 296 48 24 0 chr1 121908543 121908585 -75286847 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1515 739 286 126 19 chr1 121908585 121908631 -75286801 + B4 SINE B4 216 265 -27 1 1515 333 68 0 0 chr1 121908648 121908692 -75286740 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1515 731 316 70 40 chr1 121908692 121909021 -75286411 - MLT1A LTR MaLR -35 339 1 1 1515 904 253 83 99 chr1 121909156 121909529 -75285903 + MTE2b LTR MaLR 11 377 -2 1 1515 881 255 39 20 chr1 121910079 121910283 -75285149 + B4 SINE B4 10 217 -75 1 1515 210 261 0 0 chr1 121910317 121910363 -75285069 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 1 1515 288 224 118 0 chr1 121910367 121910452 -75284980 - L1MA9 LINE L1 -28 6284 6190 1 1515 255 204 0 0 chr1 121910462 121910516 -75284916 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1515 721 304 77 9 chr1 121910669 121910891 -75284541 - B4 SINE B4 -54 238 2 1 1515 2762 110 68 14 chr1 121910985 121911429 -75284003 + Lx2 LINE L1 6530 6997 0 1 1515 210 222 0 0 chr1 121911459 121911513 -75283919 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1515 375 41 0 0 chr1 121911515 121911564 -75283868 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1515 405 0 0 0 chr1 121911608 121911653 -75283779 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1515 208 216 0 0 chr1 121911654 121911691 -75283741 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1515 264 200 0 0 chr1 121912027 121912082 -75283350 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 1 1515 273 167 0 0 chr1 121912619 121912673 -75282759 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1515 446 332 29 113 chr1 121912807 121912896 -75282536 - B4A SINE B4 -9 283 200 1 1515 751 245 28 115 chr1 121912896 121913113 -75282319 - B3A SINE B2 0 198 1 1 1515 446 332 29 113 chr1 121913113 121913290 -75282142 - B4A SINE B4 -93 199 41 1 1515 207 0 0 0 chr1 121913290 121913313 -75282119 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1515 1084 87 7 0 chr1 121913313 121913451 -75281981 - B1_Mus1 SINE Alu -9 139 1 1 1515 446 332 29 113 chr1 121913451 121913491 -75281941 - B4A SINE B4 -252 40 2 1 1515 758 250 32 11 chr1 121914089 121914279 -75281153 + B3A SINE B2 5 198 0 1 1515 669 240 107 88 chr1 121914357 121914572 -75280860 + ID_B1 SINE B4 6 224 0 1 1515 776 192 113 58 chr1 121914610 121914692 -75280740 - RMER17C LTR ERVK -8 402 321 1 1515 852 124 0 0 chr1 121914692 121914829 -75280603 + (GGGGA)n Simple_repeat Simple_repeat 4 140 0 1 1515 776 192 113 58 chr1 121914829 121915127 -75280305 - RMER17C LTR ERVK -90 320 1 1 1515 430 279 121 26 chr1 121915588 121915772 -75279660 + B3A SINE B2 1 204 -12 1 1515 949 266 0 53 chr1 121915798 121916044 -75279388 + B4 SINE B4 58 290 -2 1 1515 252 0 0 0 chr1 121916270 121916298 -75279134 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1515 216 0 0 0 chr1 121916298 121916321 -75279111 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1515 298 280 219 11 chr1 121916503 121916675 -75278757 - B4A SINE B4 -2 290 83 1 1515 310 237 132 0 chr1 121916754 121916830 -75278602 - B4 SINE B4 -205 87 2 1 1515 1575 239 94 16 chr1 121916894 121917165 -75278267 - MTD LTR MaLR -16 403 101 1 1515 201 0 122 0 chr1 121917165 121917214 -75278218 + (GCTG)n Simple_repeat Simple_repeat 2 56 0 1 1515 1575 239 94 16 chr1 121917214 121917316 -75278116 - MTD LTR MaLR -319 100 1 1 1515 396 0 0 0 chr1 121917375 121917419 -75278013 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1515 225 350 98 16 chr1 121917612 121917734 -75277698 + Tigger5 DNA MER2_type 43 174 -2232 1 1515 263 372 13 0 chr1 121917834 121917912 -75277520 - ID_B1 SINE B4 -86 138 60 1 1515 343 281 53 23 chr1 121918199 121918330 -75277102 - L1MD LINE L1 -1615 4531 4397 1 1515 551 286 108 37 chr1 121919161 121919430 -75276002 - B4A SINE B4 0 292 5 1 1515 765 256 0 85 chr1 121919733 121919968 -75275464 - B3 SINE B2 0 216 2 1 1515 485 237 250 50 chr1 121920445 121920685 -75274747 + B4 SINE B4 1 288 -4 1 1515 193 130 36 36 chr1 121920800 121920856 -75274576 + (CAGAGA)n Simple_repeat Simple_repeat 6 61 0 1 1515 216 278 132 77 chr1 121921348 121921528 -75273904 + MIRb SINE MIR 1 184 -84 1 1515 741 194 0 0 chr1 121922198 121922353 -75273079 + (TCTG)n Simple_repeat Simple_repeat 4 158 0 1 1515 1911 259 72 48 chr1 121922355 121923379 -75272053 - Lx5 LINE L1 0 7058 6071 1 1515 571 212 7 7 chr1 121923590 121923742 -75271690 + CT-rich Low_complexity Low_complexity 1 152 0 1 1515 1019 217 25 5 chr1 121923749 121923953 -75271479 - ID_B1 SINE B4 -16 208 1 1 1515 1232 228 131 36 chr1 121924923 121925260 -75270172 - MTEa LTR MaLR 0 379 11 1 1515 578 278 85 54 chr1 121925543 121925915 -75269517 - ORR1E LTR MaLR -12 382 2 1 1515 742 255 104 5 chr1 121925922 121925996 -75269436 + ID_B1 SINE B4 8 101 -123 1 1515 851 252 74 138 chr1 121925996 121926401 -75269031 + MTE2a LTR MaLR 1 379 0 1 1515 742 255 104 5 chr1 121926401 121926519 -75268913 + ID_B1 SINE B4 102 219 -5 1 1515 279 358 24 16 chr1 121926643 121926768 -75268664 - MER5A DNA MER1_type -24 165 40 1 1515 243 0 0 0 chr1 121927347 121927374 -75268058 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1515 477 0 0 0 chr1 121927374 121927427 -75268005 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1515 970 188 129 20 chr1 121927644 121927845 -75267587 - ID_B1 SINE B4 0 224 2 1 1515 349 304 60 9 chr1 121927848 121927964 -75267468 + ORR1E LTR MaLR 1 122 -237 1 1515 248 254 0 73 chr1 121927975 121928043 -75267389 + BC1_Mm scRNA scRNA 17 79 -73 1 1515 608 279 0 7 chr1 121928455 121928592 -75266840 + RSINE1 SINE B4 2 137 -28 1 1515 315 218 10 19 chr1 121928614 121928717 -75266715 + GA-rich Low_complexity Low_complexity 3 104 0 1 1515 303 342 60 27 chr1 121928717 121928867 -75266565 + HAL1-3A_ME LINE L1 2285 2439 -419 1 1515 367 144 52 0 chr1 121928870 121928967 -75266465 + GA-rich Low_complexity Low_complexity 1 102 0 1 1515 326 268 52 0 chr1 121929197 121929294 -75266138 - B4A SINE B4 -189 103 2 1 1515 248 265 109 30 chr1 121930311 121930412 -75265020 + PB1D10 SINE Alu 1 109 -8 1 1515 883 206 46 153 chr1 121930427 121930723 -75264709 + B4A SINE B4 1 271 -21 1 1515 1107 117 9 0 chr1 121930723 121930949 -75264483 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 1515 883 206 46 153 chr1 121930949 121930975 -75264457 + B4A SINE B4 272 292 0 1 1515 362 204 11 0 chr1 121930975 121931068 -75264364 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1515 304 279 0 0 chr1 121931100 121931168 -75264264 + ID4 SINE ID 2 69 -14 1 1515 524 42 14 0 chr1 121931184 121931255 -75264177 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1515 575 125 0 0 chr1 121931785 121931865 -75263567 - RLTR20A LTR ERVK -461 80 1 1 1515 590 271 110 25 chr1 121932344 121932509 -75262923 + B4 SINE B4 42 221 -71 1 1515 342 0 0 0 chr1 121932509 121932547 -75262885 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1515 478 301 100 21 chr1 121932547 121932571 -75262861 + B4A SINE B4 222 245 -47 1 1515 231 114 0 0 chr1 121932571 121932606 -75262826 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1515 203 336 59 37 chr1 121932740 121932876 -75262556 + MIR SINE MIR 47 185 -77 1 1515 1154 102 6 0 chr1 121933278 121933454 -75261978 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 1 1515 888 147 0 0 chr1 121933455 121933605 -75261827 + (TTC)n Simple_repeat Simple_repeat 3 152 0 1 1515 285 215 0 58 chr1 121933606 121933675 -75261757 - LTR86C LTR ERVL -7 614 550 1 1515 571 292 130 0 chr1 121933709 121933901 -75261531 + MER58A DNA MER1_type 1 217 -7 1 1515 233 246 111 60 chr1 121933946 121934063 -75261369 - LTR86C LTR ERVL -150 471 349 1 1515 702 308 10 19 chr1 121934388 121934593 -75260839 - ID_B1 SINE B4 -2 222 20 1 1515 639 237 15 0 chr1 121934710 121934845 -75260587 - ID_B1 SINE B4 -6 218 82 1 1515 444 331 58 0 chr1 121935525 121935679 -75259753 - MIRc SINE MIR -100 168 6 1 1515 2276 107 3 55 chr1 121935920 121936265 -75259167 - ORR1A2 LTR MaLR 0 327 1 1 1515 520 287 44 0 chr1 121936303 121936439 -75258993 - RSINE1 SINE B4 -21 144 3 1 1515 267 282 93 12 chr1 121936785 121936871 -75258561 - ID_B1 SINE B4 -128 96 4 1 1515 684 111 0 53 chr1 121936890 121937080 -75258352 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1515 351 0 0 0 chr1 121937399 121937438 -75257994 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1515 705 318 50 0 chr1 121937496 121937738 -75257694 - MER2 DNA MER2_type -2 343 90 1 1515 426 333 43 0 chr1 121937777 121937915 -75257517 - RSINE1 SINE B4 -17 148 5 1 1515 623 240 181 11 chr1 121938041 121938218 -75257214 + ID_B1 SINE B4 9 215 -9 1 1515 21 0 0 0 chr1 121938332 121938353 -75257079 + AT_rich Low_complexity Low_complexity 1 21 0 1 1515 291 225 32 26 chr1 121938371 121938526 -75256906 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 1 1515 364 188 18 158 chr1 121938804 121938918 -75256514 + MT2B LTR ERVL 167 264 -337 1 1515 881 124 14 21 chr1 121938816 121938956 -75256476 + B1_Mus2 SINE Alu 9 147 0 1 1515 481 294 107 6 chr1 121938959 121938995 -75256437 - B3A SINE B2 -2 196 160 1 1515 189 0 0 0 chr1 121938995 121939016 -75256416 + (CGTG)n Simple_repeat Simple_repeat 3 23 0 1 1515 481 294 107 6 chr1 121939016 121939157 -75256275 - B3A SINE B2 -39 159 3 1 1515 280 299 25 108 chr1 121939441 121939561 -75255871 + PB1D10 SINE Alu 8 117 0 1 1515 459 233 0 23 chr1 121939474 121939562 -75255870 + ID_B1 SINE B4 138 223 -1 1 1515 878 256 39 10 chr1 121939567 121939772 -75255660 + ID_B1 SINE B4 1 211 -13 1 1515 188 189 141 51 chr1 121939825 121939903 -75255529 + L3 LINE CR1 4337 4421 -68 1 1515 457 200 184 48 chr1 121940222 121940369 -75255063 - RMER30 DNA MER1_type -16 186 20 1 1515 363 254 0 0 chr1 121940437 121940508 -75254924 + Charlie12 DNA MER1_type 2800 2870 -3 1 1515 786 246 60 28 chr1 121940528 121940745 -75254687 + ID_B1 SINE B4 1 224 0 1 1515 420 241 9 9 chr1 121940895 121941004 -75254428 - PB1D9 SINE Alu -11 109 1 1 1515 284 336 60 0 chr1 121941857 121941991 -75253441 - MLT1L LTR MaLR -129 481 340 1 1515 1404 71 38 0 chr1 121942024 121942207 -75253225 - B2_Mm2 SINE B2 -4 191 2 1 1515 300 277 0 0 chr1 121942267 121942350 -75253082 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1515 517 229 11 11 chr1 121942351 121942528 -75252904 + (CATA)n Simple_repeat Simple_repeat 2 178 0 1 1515 181 278 0 85 chr1 121942602 121942661 -75252771 + MIR3 SINE MIR 114 167 -41 1 1515 492 18 0 0 chr1 121942813 121942870 -75252562 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1515 936 266 53 12 chr1 121942871 121943115 -75252317 - B4 SINE B4 -37 255 2 1 1515 1578 68 0 0 chr1 121943476 121943984 -75251448 + (TCCA)n Simple_repeat Simple_repeat 1 508 0 1 1515 724 190 3 6 chr1 121944555 121944869 -75250563 + (CA)n Simple_repeat Simple_repeat 1 312 0 1 1515 267 370 11 17 chr1 121945261 121945437 -75249995 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 1 1515 195 129 0 0 chr1 121945456 121945487 -75249945 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1 1515 427 167 14 0 chr1 121945975 121946047 -75249385 - B3A SINE B2 -125 73 1 1 1515 445 254 106 81 chr1 121946287 121946498 -75248934 - B4A SINE B4 0 292 79 1 1515 707 258 91 0 chr1 121946498 121946631 -75248801 - B3 SINE B2 0 216 83 1 1515 318 26 0 0 chr1 121946631 121946670 -75248762 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1515 707 258 91 0 chr1 121946670 121946734 -75248698 - B3 SINE B2 -134 82 2 1 1515 445 254 106 81 chr1 121946734 121946805 -75248627 - B4A SINE B4 -214 78 3 1 1515 344 253 13 0 chr1 121946883 121946958 -75248474 + ID4 SINE ID 6 81 -2 1 1515 408 40 0 0 chr1 121947214 121947264 -75248168 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1515 247 234 0 15 chr1 121947289 121947354 -75248078 - RSINE1 SINE B4 -35 130 67 1 1515 458 278 96 32 chr1 121947571 121947883 -75247549 - HAL1 LINE L1 -1383 1124 793 1 1515 412 291 96 57 chr1 121947992 121948149 -75247283 - RSINE1 SINE B4 0 165 3 1 1515 387 0 0 0 chr1 121948373 121948416 -75247016 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1515 405 0 0 0 chr1 121948416 121948460 -75246972 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1515 895 233 69 7 chr1 121948463 121948676 -75246756 + ID_B1 SINE B4 28 255 -37 1 1515 927 242 123 126 chr1 121949023 121949279 -75246153 - RLTR12B LTR ERVK -43 485 251 1 1515 999 117 0 0 chr1 121949279 121949459 -75245973 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1515 927 242 123 126 chr1 121949459 121949688 -75245744 - RLTR12B LTR ERVK -278 250 1 1 1515 1352 274 41 11 chr1 121949860 121950222 -75245210 - MTE2b LTR MaLR -6 373 1 1 1515 277 270 13 26 chr1 121950392 121950468 -75244964 + ID SINE ID 5 79 -145 1 1515 773 258 6 6 chr1 121950522 121950705 -75244727 - B3A SINE B2 -15 183 1 1 1515 274 215 0 5 chr1 121951103 121951172 -75244260 - B4A SINE B4 -41 251 184 1 1515 195 100 0 0 chr1 121951252 121951282 -75244150 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 1515 333 302 0 0 chr1 121951314 121951400 -75244032 + PB1D10 SINE Alu 25 110 -7 1 1515 382 342 45 13 chr1 121951409 121951566 -75243866 + RSINE1 SINE B4 3 164 -1 1 1515 204 40 0 0 chr1 121951621 121951646 -75243786 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1515 219 403 0 0 chr1 121952526 121952603 -75242829 + ID2 SINE ID 4 80 -3 1 1515 296 292 41 12 chr1 121952613 121952783 -75242649 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 1515 777 269 52 22 chr1 121953136 121953368 -75242064 + B4 SINE B4 2 240 -52 1 1515 312 27 0 0 chr1 121953398 121953435 -75241997 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1515 414 0 0 0 chr1 121953435 121953480 -75241952 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1515 281 301 12 0 chr1 121953752 121953835 -75241597 + HAL1 LINE L1 2254 2337 -170 1 1515 721 144 25 6 chr1 121953904 121954065 -75241367 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 1515 241 68 22 22 chr1 121954093 121954138 -75241294 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1515 710 214 158 71 chr1 121954147 121954413 -75241019 - B4 SINE B4 -3 289 1 1 1515 376 218 9 129 chr1 121954672 121954788 -75240644 + ID_B1 SINE B4 94 195 -29 1 1515 231 311 0 0 chr1 121954866 121954927 -75240505 + tRNA-Ala-GCA tRNA tRNA 2 62 -13 1 1515 375 127 0 0 chr1 121954960 121955023 -75240409 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1515 411 264 14 79 chr1 121955648 121955788 -75239644 + B1F2 SINE Alu 12 142 -7 1 1515 231 240 0 0 chr1 121955825 121955875 -75239557 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1515 288 0 0 0 chr1 121955988 121956020 -75239412 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1515 834 207 50 6 chr1 121956033 121956213 -75239219 + B3A SINE B2 3 190 -8 1 1515 214 178 0 0 chr1 121956249 121956294 -75239138 + (CAA)n Simple_repeat Simple_repeat 2 46 0 1 1515 262 273 15 0 chr1 121956315 121956381 -75239051 + tRNA-Ala-GCY_ tRNA tRNA 6 72 -3 1 1515 673 309 48 24 chr1 121956393 121956642 -75238790 + B4A SINE B4 15 269 -23 1 1515 248 0 31 0 chr1 121956673 121956705 -75238727 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1515 1462 47 10 5 chr1 121956712 121956904 -75238528 - B2_Mm1t SINE B2 0 193 1 1 1515 1285 108 16 0 chr1 121956909 121957095 -75238337 - B2_Mm2 SINE B2 -4 191 3 1 1515 784 281 86 88 chr1 121957361 121957739 -75237693 - MTE2b LTR MaLR -20 359 1 1 1515 270 81 0 0 chr1 121958247 121958284 -75237148 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1515 378 0 0 0 chr1 121958284 121958325 -75237107 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1515 516 193 97 0 chr1 121959275 121959389 -75236043 + RSINE1 SINE B4 1 125 -40 1 1515 30 45 0 0 chr1 121959447 121959491 -75235941 + AT_rich Low_complexity Low_complexity 1 44 0 1 1515 850 287 5 5 chr1 121960516 121960733 -75234699 - ID_B1 SINE B4 -2 222 6 1 1515 276 373 12 24 chr1 121961258 121961423 -75234009 + RSINE1 SINE B4 3 165 0 1 1515 646 299 75 25 chr1 121961465 121961743 -75233689 + B4 SINE B4 1 292 0 1 1515 362 179 94 12 chr1 121961794 121961879 -75233553 + PB1 SINE Alu 34 125 -2 1 1515 226 241 110 37 chr1 121961885 121961967 -75233465 + ID4 SINE ID 17 104 -48 1 1515 740 282 17 51 chr1 121962120 121962353 -75233079 + B4 SINE B4 2 226 -66 1 1515 484 312 81 51 chr1 121962353 121962589 -75232843 + B4A SINE B4 1 243 -49 1 1515 307 83 0 20 chr1 121962745 121962794 -75232638 + HAL1-3A_ME LINE L1 1976 2023 -835 1 1515 446 313 81 56 chr1 121963379 121963595 -75231837 + B4A SINE B4 2 227 -65 1 1515 714 172 85 75 chr1 121963595 121963783 -75231649 + B2_Mm2 SINE B2 1 190 -5 1 1515 446 313 81 56 chr1 121963783 121963850 -75231582 + B4A SINE B4 228 292 0 1 1515 329 43 0 21 chr1 121963881 121963929 -75231503 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1515 356 163 10 157 chr1 121965238 121965340 -75230092 + B4 SINE B4 119 205 -87 1 1515 506 182 9 0 chr1 121965340 121965450 -75229982 + G-rich Low_complexity Low_complexity 6 116 0 1 1515 351 0 0 0 chr1 121965532 121965571 -75229861 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1515 712 261 122 24 chr1 121966258 121966505 -75228927 + B4A SINE B4 2 272 -20 1 1515 486 0 0 0 chr1 121966525 121966579 -75228853 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1515 237 243 0 14 chr1 121966669 121966740 -75228692 - ID4_ SINE ID -9 74 5 1 1515 579 206 147 5 chr1 121967145 121967335 -75228097 + B4 SINE B4 1 217 -75 1 1515 796 246 62 130 chr1 121967340 121967547 -75227885 + B4 SINE B4 20 229 -63 1 1515 790 76 168 0 chr1 121967547 121967666 -75227766 + B1_Mm SINE Alu 1 139 -8 1 1515 232 48 23 23 chr1 121967666 121967709 -75227723 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1515 796 246 62 130 chr1 121967709 121967776 -75227656 + B4 SINE B4 230 275 -17 1 1515 295 168 70 96 chr1 121968448 121968543 -75226889 - PB1D7 SINE Alu 0 127 29 1 1515 233 271 159 32 chr1 121968450 121968576 -75226856 - ID_B1 SINE B4 -3 221 80 1 1515 321 179 12 71 chr1 121968793 121968961 -75226471 + CT-rich Low_complexity Low_complexity 4 161 0 1 1515 281 248 147 10 chr1 121969242 121969344 -75226088 + MIRc SINE MIR 33 148 -120 1 1515 417 250 9 9 chr1 121969356 121969461 -75225971 + PB1 SINE Alu 11 115 -12 1 1515 470 246 90 0 chr1 121970841 121970963 -75224469 + B1F SINE Alu 2 134 -15 1 1515 261 342 0 0 chr1 121970969 121971048 -75224384 + G-rich Low_complexity Low_complexity 5 83 0 1 1515 241 246 33 0 chr1 121971580 121971641 -75223791 - MER5A DNA MER1_type -51 138 76 1 1515 764 232 17 40 chr1 121971937 121972112 -75223320 + ID_B1 SINE B4 54 224 0 1 1515 283 258 90 0 chr1 121972445 121972534 -75222898 + PB1D9 SINE Alu 9 105 -15 1 1515 1289 87 11 0 chr1 121972660 121972844 -75222588 - B2_Mm1t SINE B2 -6 187 2 1 1515 251 272 0 129 chr1 121973606 121973699 -75221733 + ID4 SINE ID 2 82 -1 1 1515 279 0 0 0 chr1 121973716 121973747 -75221685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1515 1113 55 7 20 chr1 121973762 121973911 -75221521 + B1_Mus2 SINE Alu 1 147 0 1 1515 731 222 115 108 chr1 121973961 121974249 -75221183 + B4 SINE B4 2 291 -1 1 1515 349 210 223 46 chr1 121975125 121975255 -75220177 + RSINE1 SINE B4 13 165 0 1 1515 414 57 0 0 chr1 121975259 121975312 -75220120 + (CCA)n Simple_repeat Simple_repeat 1 53 0 1 1515 232 258 79 16 chr1 121975312 121975375 -75220057 + B4 SINE B4 220 286 -6 1 1515 349 206 32 21 chr1 121975766 121975860 -75219572 + B4A SINE B4 2 96 -196 1 1515 1720 259 44 41 chr1 121975860 121976423 -75219009 + Lx9 LINE L1 6924 7488 -156 1 1515 237 300 0 0 chr1 121976610 121976670 -75218762 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1515 1856 166 68 46 chr1 121976751 121977039 -75218393 + MTC LTR MaLR 2 281 -140 1 1515 181 0 69 0 chr1 121977039 121977068 -75218364 + (CCCTG)n Simple_repeat Simple_repeat 4 34 0 1 1515 1856 166 68 46 chr1 121977068 121977190 -75218242 + MTC LTR MaLR 282 421 0 1 1515 393 164 35 28 chr1 121977583 121977727 -75217705 + (TG)n Simple_repeat Simple_repeat 1 145 0 1 1515 3076 63 0 15 chr1 121977732 121978134 -75217298 - MTA_Mm LTR MaLR 0 396 1 1 1515 590 111 0 77 chr1 121978141 121978336 -75217096 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1515 243 269 0 82 chr1 121978370 121978443 -75216989 - ID4 SINE ID -14 69 3 1 1515 231 195 24 24 chr1 121978492 121978576 -75216856 + CT-rich Low_complexity Low_complexity 2 85 0 1 1515 355 247 0 12 chr1 121978625 121978711 -75216721 - PB1D10 SINE Alu -26 91 7 1 1515 302 80 20 0 chr1 121980104 121980154 -75215278 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1515 379 150 15 52 chr1 121980154 121980288 -75215144 + (CAGAGA)n Simple_repeat Simple_repeat 4 132 0 1 1515 372 304 234 23 chr1 121980315 121980537 -75214895 - B4 SINE B4 -23 269 1 1 1515 235 257 0 103 chr1 121980990 121981068 -75214364 - ID4 SINE ID -9 74 5 1 1515 225 0 0 0 chr1 121981106 121981131 -75214301 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1515 1015 136 104 5 chr1 121981269 121981461 -75213971 - B3 SINE B2 -5 211 1 1 1515 605 140 0 74 chr1 121981477 121981585 -75213847 - B1_Mur2 SINE Alu -8 141 42 1 1515 235 179 31 134 chr1 121981507 121981604 -75213828 - RLTR25B LTR ERVK -515 513 427 1 1515 334 253 0 12 chr1 121981605 121981685 -75213747 - ID4_ SINE ID -1 82 4 1 1515 246 32 0 0 chr1 121981704 121981735 -75213697 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1515 376 289 21 0 chr1 121981821 121981918 -75213514 - PB1 SINE Alu -27 100 2 1 1515 300 281 40 0 chr1 121982222 121982321 -75213111 - PB1D10 SINE Alu -45 104 2 1 1515 323 271 11 23 chr1 121982936 121983023 -75212409 + ID_B1 SINE B4 97 182 -42 1 1515 310 216 81 0 chr1 121983207 121983281 -75212151 + MTE2b LTR MaLR 8 87 -292 1 1515 323 200 122 19 chr1 121983291 121983398 -75212034 - MTEa LTR MaLR -84 295 178 1 1515 525 315 44 29 chr1 121983431 121983637 -75211795 - MTEa LTR MaLR -170 209 1 1 1515 191 146 24 0 chr1 121984128 121984169 -75211263 + CT-rich Low_complexity Low_complexity 4 45 0 1 1515 399 316 65 32 chr1 121984282 121984560 -75210872 + B4A SINE B4 2 288 -4 1 1515 234 0 0 0 chr1 121984570 121984596 -75210836 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1515 690 291 113 21 chr1 121984921 121985256 -75210176 + MTB_Mm LTR MaLR 1 393 -14 1 1515 222 91 0 0 chr1 121985943 121985976 -75209456 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 1 1515 401 96 32 11 chr1 121986609 121986704 -75208728 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1515 589 268 99 33 chr1 121986719 121986962 -75208470 - RCHARR1 DNA MER1_type -713 261 3 1 1515 207 139 0 0 chr1 121987469 121987505 -75207927 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1 1515 518 230 432 13 chr1 121988322 121988484 -75206948 - B4A SINE B4 -14 278 49 1 1515 2189 124 118 22 chr1 121988732 121989206 -75206226 - RMER4B LTR ERVK 0 466 1 1 1515 198 309 18 0 chr1 121989206 121989261 -75206171 - MER5A DNA MER1_type -4 185 130 1 1515 691 267 35 30 chr1 121989264 121989461 -75205971 + B3A SINE B2 1 198 0 1 1515 280 313 43 0 chr1 121989504 121989619 -75205813 - MER5A DNA MER1_type -69 120 1 1 1515 314 338 89 22 chr1 121989710 121989974 -75205458 + ORR1E LTR MaLR 66 366 -13 1 1515 1612 26 0 0 chr1 121990442 121990634 -75204798 - B2_Mm1a SINE B2 0 193 2 1 1515 547 248 47 7 chr1 121991201 121991351 -75204081 - RSINE1 SINE B4 -8 157 2 1 1515 663 250 0 20 chr1 121991518 121991669 -75203763 - ID_B1 SINE B4 -76 148 1 1 1515 1672 136 94 18 chr1 121991881 121992332 -75203100 - Lx4A LINE L1 0 7058 6498 1 1515 256 127 146 0 chr1 121992322 121992377 -75203055 - L1_Mur2 LINE L1 -6595 117 55 1 1515 267 286 0 0 chr1 121992608 121992664 -75202768 - B1F2 SINE Alu -91 58 3 1 1515 1162 131 29 14 chr1 121992672 121992882 -75202550 - URR1A DNA MER1_type -2 224 12 1 1515 346 254 28 0 chr1 121992880 121992951 -75202481 - ID SINE ID -142 82 10 1 1515 2163 129 35 107 chr1 121993032 121993544 -75201888 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1515 595 122 119 18 chr1 121993545 121993654 -75201778 + PB1D9 SINE Alu 1 120 0 1 1515 810 81 0 0 chr1 121993716 121993827 -75201605 + (TCCA)n Simple_repeat Simple_repeat 3 113 0 1 1515 519 257 187 16 chr1 121994056 121994238 -75201194 + RMER21B LTR ERV1 355 567 -275 1 1515 1187 107 11 0 chr1 121994605 121994782 -75200650 + B2_Mm1t SINE B2 1 179 -14 1 1515 306 142 0 39 chr1 121994833 121994900 -75200532 + B2_Mm2 SINE B2 47 109 -107 1 1515 252 0 0 0 chr1 121994916 121994944 -75200488 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1515 224 220 20 0 chr1 121995341 121995391 -75200041 + GA-rich Low_complexity Low_complexity 4 54 0 1 1515 524 301 53 21 chr1 121995517 121995802 -75199630 + L1ME2z LINE L1 6139 6432 -12 1 1515 534 249 70 60 chr1 121995812 121996013 -75199419 + B4 SINE B4 2 204 -88 1 1515 739 158 8 30 chr1 121995905 121996036 -75199396 + B1_Mus2 SINE Alu 5 132 -15 1 1515 398 94 0 15 chr1 121996402 121996439 -75198993 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1515 347 92 0 15 chr1 121996439 121996505 -75198927 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1515 398 94 0 15 chr1 121996505 121996532 -75198900 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1515 618 14 0 0 chr1 121996560 121996631 -75198801 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1515 343 236 0 0 chr1 121996919 121996991 -75198441 + ID_B1 SINE B4 145 216 -8 1 1515 290 123 49 66 chr1 121996941 121997002 -75198430 + PB1D7 SINE Alu 60 119 -1 1 1515 210 143 0 0 chr1 121997037 121997072 -75198360 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1515 352 296 10 30 chr1 121997529 121997630 -75197802 + MLT1G3 LTR MaLR 4 102 -493 1 1515 843 240 14 9 chr1 121997636 121997846 -75197586 + B3 SINE B2 5 215 -1 1 1515 1737 184 64 35 chr1 121997902 121998245 -75197187 + MTD LTR MaLR 1 363 -56 1 1515 2059 114 9 41 chr1 121998245 121998583 -75196849 - ORR1A2 LTR MaLR 0 327 1 1 1515 1737 184 64 35 chr1 121998583 121998644 -75196788 + MTD LTR MaLR 364 417 -2 1 1515 686 293 0 6 chr1 121998654 121998819 -75196613 + B4 SINE B4 125 288 -4 1 1515 314 253 44 0 chr1 121998874 121998965 -75196467 + MLT1G3 LTR MaLR 223 317 -278 1 1515 752 197 14 31 chr1 121999188 121999357 -75196075 - ID_B1 SINE B4 -73 219 60 1 1515 235 315 129 27 chr1 121999314 121999461 -75195971 - MLT1D LTR MaLR -77 428 267 1 1515 515 304 142 19 chr1 121999794 121999999 -75195433 + B4A SINE B4 36 265 -27 1 1515 197 33 33 0 chr1 122000033 122000063 -75195369 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1515 1306 237 31 88 chr1 122000143 122000531 -75194901 - MTE2a LTR MaLR -13 366 1 2 1515 35 0 0 0 chr1 122001283 122001318 -75194114 + AT_rich Low_complexity Low_complexity 1 35 0 3 1515 219 88 0 0 chr1 122001318 122001352 -75194080 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1515 639 256 35 77 chr1 122001354 122001523 -75193909 - B3A SINE B2 -28 170 9 5 1515 244 279 127 111 chr1 122001547 122001728 -75193704 - B4A SINE B4 -27 265 82 6 1515 1529 58 26 0 chr1 122001730 122001920 -75193512 - B2_Mm2 SINE B2 0 195 1 7 1515 3231 36 3 3 chr1 122002659 122003047 -75192385 + MTA_Mm LTR MaLR 1 388 -8 8 1515 7945 75 17 6 chr1 122003053 122004007 -75191425 + MTA_Mm-int LTR MaLR 1 965 -133 8 1515 5217 59 5 0 chr1 122004007 122004653 -75190779 - L1Md_F2 LINE L1 -1 6581 5933 9 1515 7945 75 17 6 chr1 122004653 122004785 -75190647 + MTA_Mm-int LTR MaLR 966 1097 -1 8 1515 3168 33 7 88 chr1 122004785 122005216 -75190216 + MTA_Mm LTR MaLR 1 396 0 8 1515 403 183 65 28 chr1 122005353 122005460 -75189972 + PB1D7 SINE Alu 10 120 0 1 1515 253 179 214 71 chr1 122005460 122005473 -75189959 + B4A SINE B4 127 233 -59 1 1515 289 289 127 77 chr1 122005501 122005722 -75189710 + B4A SINE B4 4 235 -57 1 1515 388 261 97 14 chr1 122005926 122006070 -75189362 + B4A SINE B4 127 282 -10 1 1515 408 290 112 27 chr1 122006110 122006298 -75189134 + Tigger7 DNA MER2_type 2276 2479 -12 1 1515 1383 194 26 77 chr1 122007017 122007357 -75188075 - RLTR18B LTR ERVK -4 508 186 1 1515 746 170 18 70 chr1 122007389 122007560 -75187872 + RLTR18B LTR ERVK 31 192 -320 1 1515 263 282 42 0 chr1 122007543 122007614 -75187818 - PB1 SINE Alu -53 74 1 1 1515 288 0 0 0 chr1 122007901 122007933 -75187499 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1515 275 357 0 0 chr1 122007950 122008020 -75187412 - B4 SINE B4 -3 289 220 1 1515 739 243 142 11 chr1 122008034 122008217 -75187215 - B3 SINE B2 -8 208 2 2 1515 384 279 111 32 chr1 122008229 122008355 -75187077 - B1F2 SINE Alu -13 136 1 2 1515 180 0 0 0 chr1 122008627 122008647 -75186785 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1515 862 219 86 24 chr1 122009362 122009572 -75185860 - ID_B1 SINE B4 -1 223 1 2 1515 517 293 107 0 chr1 122009650 122009790 -75185642 + RSINE1 SINE B4 11 165 0 2 1515 1132 172 67 9 chr1 122010229 122010493 -75184939 + ORR1B1 LTR MaLR 60 386 -8 2 1515 275 316 12 12 chr1 122010501 122010581 -75184851 - B3 SINE B2 -39 177 98 2 1515 1279 48 0 0 chr1 122010581 122010727 -75184705 + B1_Mus1 SINE Alu 3 148 0 2 1515 231 42 83 0 chr1 122010728 122010776 -75184656 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 1515 448 284 27 9 chr1 122010779 122010889 -75184543 - B3A SINE B2 -86 112 1 2 1515 1427 171 204 16 chr1 122010939 122011253 -75184179 + ORR1D1 LTR MaLR 2 374 0 2 1515 550 223 98 16 chr1 122011280 122011403 -75184029 - RSINE1 SINE B4 -31 134 2 3 1515 920 230 96 19 chr1 122011403 122011608 -75183824 - B4A SINE B4 -62 230 10 3 1515 840 182 0 26 chr1 122013128 122013280 -75182152 - B1_Mur4 SINE Alu 0 150 3 3 1515 793 167 206 87 chr1 122013291 122013567 -75181865 - RMER1C Other Other -2 1340 1032 3 1515 889 232 33 9 chr1 122013747 122013960 -75181472 + ID_B1 SINE B4 1 218 -6 3 1515 308 302 74 44 chr1 122013990 122014125 -75181307 + ID_B1 SINE B4 85 223 -1 3 1515 991 198 84 0 chr1 122014140 122014342 -75181090 + ID_B1 SINE B4 2 220 -4 3 1515 215 0 67 0 chr1 122014458 122014488 -75180944 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1515 732 169 32 8 chr1 122014488 122014613 -75180819 + B3 SINE B2 3 130 -86 3 1515 198 0 0 0 chr1 122014765 122014787 -75180645 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 3 1515 499 252 137 0 chr1 122015131 122015262 -75180170 - RSINE1 SINE B4 -15 150 2 4 1515 421 356 6 42 chr1 122015262 122015429 -75180003 + MER3 DNA MER1_type 49 209 0 4 1515 363 252 142 99 chr1 122015847 122015988 -75179444 + B4 SINE B4 1 147 -145 4 1515 182 310 70 0 chr1 122018321 122018392 -75177040 - L2a LINE L2 -52 3374 3299 4 1515 180 0 0 0 chr1 122018711 122018731 -75176701 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1515 468 145 26 0 chr1 122018731 122018807 -75176625 - PB1D9 SINE Alu 0 120 43 4 1515 247 217 82 55 chr1 122018755 122018828 -75176604 - RLTR25B LTR ERVK -536 492 418 4 1515 365 228 0 71 chr1 122019385 122019470 -75175962 + ID4_ SINE ID 2 80 -3 4 1515 966 264 34 30 chr1 122020153 122020415 -75175017 - B4 SINE B4 -20 272 10 4 1515 366 314 18 70 chr1 122020450 122020621 -75174811 + RSINE1 SINE B4 2 163 -2 4 1515 286 318 18 0 chr1 122020976 122021086 -75174346 + PB1D7 SINE Alu 2 113 -7 5 1515 802 258 117 34 chr1 122021097 122021335 -75174097 + B4A SINE B4 2 265 -27 5 1515 351 44 0 0 chr1 122021335 122021380 -75174052 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1515 802 258 117 34 chr1 122021380 122021406 -75174026 + B4A SINE B4 266 288 -4 5 1515 681 255 120 5 chr1 122021762 122021979 -75173453 - Lx8 LINE L1 -816 6657 6416 5 1515 378 229 24 0 chr1 122022736 122022818 -75172614 - B4 SINE B4 0 292 222 5 1515 227 79 0 26 chr1 122022867 122022906 -75172526 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1515 358 232 0 14 chr1 122022908 122022978 -75172454 - B3 SINE B2 -66 150 82 5 1515 324 0 0 0 chr1 122023001 122023037 -75172395 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1515 578 244 11 77 chr1 122023125 122023307 -75172125 - B4 SINE B4 -122 170 1 5 1515 847 230 77 55 chr1 122023307 122023529 -75171903 - B4 SINE B4 -64 228 2 5 1515 598 301 86 80 chr1 122023907 122024105 -75171327 - L1MDa LINE L1 -6120 513 306 5 1515 234 0 0 0 chr1 122024105 122024131 -75171301 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1515 216 0 0 0 chr1 122024131 122024154 -75171278 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1515 598 301 86 80 chr1 122024154 122024183 -75171249 - L1MDa LINE L1 -6328 305 288 5 1515 864 201 82 12 chr1 122024183 122024354 -75171078 - B3A SINE B2 -15 183 1 6 1515 598 301 86 80 chr1 122024354 122024587 -75170845 - L1MDa LINE L1 -6346 287 49 5 1515 819 209 34 68 chr1 122024634 122024839 -75170593 - B3A SINE B2 0 198 1 6 1515 383 287 0 42 chr1 122024852 122024972 -75170460 + PB1D10 SINE Alu 2 116 -1 6 1515 23 33 0 0 chr1 122024996 122025026 -75170406 + AT_rich Low_complexity Low_complexity 1 30 0 6 1515 21 0 0 0 chr1 122025089 122025110 -75170322 + AT_rich Low_complexity Low_complexity 1 21 0 6 1515 1044 214 31 0 chr1 122025110 122025306 -75170126 - B3 SINE B2 -14 202 1 6 1515 551 253 30 72 chr1 122025341 122025507 -75169925 - RSINE1 SINE B4 -4 161 3 6 1515 492 268 112 104 chr1 122025653 122025903 -75169529 + B4 SINE B4 21 272 -20 6 1515 629 224 70 38 chr1 122026442 122026600 -75168832 + RSINE1 SINE B4 1 163 -2 7 1515 507 254 115 6 chr1 122026643 122026825 -75168607 - B4 SINE B4 -86 206 5 7 1515 387 0 0 0 chr1 122026846 122026889 -75168543 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1515 314 286 13 0 chr1 122026911 122026988 -75168444 - RSINE1 SINE B4 -3 162 85 7 1515 324 237 77 26 chr1 122026995 122027073 -75168359 + B4 SINE B4 203 284 -8 7 1515 966 254 150 46 chr1 122027253 122027620 -75167812 - MTD LTR MaLR -14 405 1 7 1515 329 311 44 0 chr1 122027832 122027922 -75167510 - MLT1A0 LTR MaLR -125 240 147 7 1515 321 26 0 0 chr1 122027938 122027976 -75167456 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 189 879 298 58 19 chr1 122027977 122028237 -75167195 - B4A SINE B4 -22 270 1 7 1516 523 286 16 0 chr1 122028237 122028360 -75167072 - MLT1A0 LTR MaLR -209 156 32 7 1516 330 258 132 22 chr1 122028413 122028504 -75166928 + PB1D9 SINE Alu 20 120 0 7 1516 2028 206 11 0 chr1 122028653 122029018 -75166414 - MTEa LTR MaLR -7 372 4 8 1516 253 240 39 26 chr1 122029128 122029205 -75166227 - HERVL40-int LTR ERVL -3403 2127 2050 8 1516 252 0 0 0 chr1 122029410 122029438 -75165994 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1516 582 54 0 0 chr1 122029438 122029511 -75165921 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1516 600 235 38 0 chr1 122029526 122029658 -75165774 - B3A SINE B2 -57 141 5 8 1516 914 174 42 0 chr1 122029694 122029861 -75165571 - URR1B DNA MER1_type 0 225 52 8 1516 1412 163 91 0 chr1 122029955 122030207 -75165225 - ORR1C1 LTR MaLR 0 378 104 8 1516 838 219 88 177 chr1 122030200 122030505 -75164927 - MTE2a LTR MaLR -97 282 5 8 1516 550 253 195 0 chr1 122030537 122030711 -75164721 - ID_B1 SINE B4 -14 210 3 8 1516 361 277 131 37 chr1 122030757 122030948 -75164484 - LTR40c LTR ERVL -110 355 147 8 1516 237 314 83 49 chr1 122030936 122031080 -75164352 - LTR40b LTR ERVL -257 205 57 9 1516 718 261 28 83 chr1 122031139 122031237 -75164195 + B4 SINE B4 1 86 -206 9 1516 499 257 13 128 chr1 122031237 122031393 -75164039 + B1_Mur1 SINE Alu 3 140 -9 9 1516 387 159 148 2 chr1 122031405 122031508 -75163924 + B4A SINE B4 150 267 -25 9 1516 182 62 0 30 chr1 122031511 122031544 -75163888 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 9 1516 610 286 71 39 chr1 122031974 122032156 -75163276 - B3A SINE B2 0 198 11 9 1516 21 0 0 0 chr1 122032266 122032287 -75163145 + AT_rich Low_complexity Low_complexity 1 21 0 9 1516 186 106 64 0 chr1 122032305 122032352 -75163080 + (TA)n Simple_repeat Simple_repeat 1 50 0 9 1516 344 272 54 30 chr1 122032357 122032499 -75162933 - RSINE1 SINE B4 0 165 21 9 1516 421 258 60 38 chr1 122032553 122032725 -75162707 - MTEa LTR MaLR -6 373 192 9 1516 300 282 193 30 chr1 122033040 122033175 -75162257 + RSINE1 SINE B4 7 163 -2 1 1516 437 222 56 0 chr1 122033276 122033366 -75162066 + RSINE1 SINE B4 38 132 -33 1 1516 646 255 101 16 chr1 122033684 122033931 -75161501 + Lx7 LINE L1 4721 4988 -859 1 1516 482 210 53 17 chr1 122033972 122034081 -75161351 + B3A SINE B2 46 146 -49 1 1516 271 306 16 8 chr1 122034251 122034407 -75161025 + L1_Mur2 LINE L1 5297 5454 -702 1 1516 524 191 0 0 chr1 122034413 122034497 -75160935 + RSINE1 SINE B4 10 93 -72 1 1516 645 260 131 51 chr1 122034501 122034689 -75160743 + Lx7 LINE L1 5380 5631 -2065 1 1516 1544 107 4 30 chr1 122034689 122034920 -75160512 - URR1B DNA MER1_type 0 225 1 1 1516 645 233 99 63 chr1 122034920 122035162 -75160270 + Lx7 LINE L1 5631 5889 -1584 1 1516 186 103 0 0 chr1 122035176 122035205 -75160227 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1516 278 361 13 0 chr1 122035205 122035363 -75160069 + G-rich Low_complexity Low_complexity 1 160 0 1 1516 290 304 74 87 chr1 122035763 122035947 -75159485 - L1MA4 LINE L1 -367 5933 5744 1 1516 426 20 0 0 chr1 122035947 122035998 -75159434 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1516 290 304 74 87 chr1 122035998 122036216 -75159216 - L1MA4 LINE L1 -557 5743 5536 1 1516 410 79 16 0 chr1 122036216 122036279 -75159153 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1516 395 208 57 22 chr1 122036337 122036494 -75158938 - L1MA4 LINE L1 -805 5338 5142 1 1516 429 194 22 15 chr1 122036557 122036646 -75158786 + PB1 SINE Alu 40 120 -7 1 1516 349 351 40 26 chr1 122036786 122036938 -75158494 - MER82 DNA MER2_type -117 536 383 1 1516 691 307 5 85 chr1 122036924 122037148 -75158284 - B4 SINE B4 0 292 87 1 1516 894 73 0 0 chr1 122037158 122037281 -75158151 + (TCCC)n Simple_repeat Simple_repeat 4 126 0 1 1516 417 318 36 0 chr1 122037351 122037461 -75157971 - RSINE1 SINE B4 -15 150 37 1 1516 219 69 0 0 chr1 122037505 122037534 -75157898 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1516 663 216 16 0 chr1 122037916 122038041 -75157391 - ETnERV2-int LTR ERVK -210 7196 7070 1 1516 621 204 0 0 chr1 122038042 122038184 -75157248 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1516 336 349 61 15 chr1 122038184 122038315 -75157117 - RSINE1 SINE B4 0 165 29 1 1516 1122 121 43 47 chr1 122038316 122038550 -75156882 - RMER1B Other Other -9 1057 825 1 1516 297 196 0 51 chr1 122038570 122038629 -75156803 - B4 SINE B4 -236 56 1 1 1516 26 0 0 0 chr1 122038638 122038664 -75156768 + AT_rich Low_complexity Low_complexity 1 26 0 1 1516 418 301 70 25 chr1 122038672 122038829 -75156603 - RSINE1 SINE B4 0 165 2 1 1516 705 296 170 19 chr1 122038832 122039155 -75156277 - MER82 DNA MER2_type -281 372 1 1 1516 291 323 90 0 chr1 122039607 122039762 -75155670 - ORSL-2a DNA Tip100 -8 334 166 1 1516 330 252 193 41 chr1 122039765 122039910 -75155522 - HAL1-3A_ME LINE L1 -415 2443 2277 1 1516 253 203 29 14 chr1 122039910 122039980 -75155452 + CT-rich Low_complexity Low_complexity 4 74 0 1 1516 244 222 40 182 chr1 122040807 122040906 -75154526 - RSINE1 SINE B4 0 165 81 1 1516 490 330 7 97 chr1 122041169 122041478 -75153954 - L1MD2 LINE L1 -12 6347 6067 1 1516 1055 235 98 36 chr1 122042060 122042273 -75153159 + B4 SINE B4 2 231 -61 1 1516 1839 162 53 43 chr1 122042273 122042647 -75152785 - ORR1C1 LTR MaLR 0 378 1 1 1516 1055 235 98 36 chr1 122042647 122042707 -75152725 + B4 SINE B4 232 292 0 1 1516 547 288 129 29 chr1 122043003 122043347 -75152085 + RMER20B LTR ERVK 125 500 -16 1 1516 273 143 67 67 chr1 122043404 122043479 -75151953 - L1MD2 LINE L1 -400 5959 5885 1 1516 207 162 0 0 chr1 122043480 122043517 -75151915 + CT-rich Low_complexity Low_complexity 3 39 0 1 1516 566 279 100 83 chr1 122043688 122043868 -75151564 + B3A SINE B2 9 191 -4 1 1516 793 244 67 38 chr1 122043876 122044085 -75151347 + B3 SINE B2 2 216 0 1 1516 212 0 36 0 chr1 122044188 122044216 -75151216 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1516 593 279 96 30 chr1 122044233 122044503 -75150929 - B4A SINE B4 0 292 5 1 1516 232 296 42 0 chr1 122044535 122044606 -75150826 - L1MC LINE L1 -769 5575 5502 1 1516 549 279 48 7 chr1 122044747 122044766 -75150666 + ID SINE ID 66 84 -140 1 1516 286 208 60 209 chr1 122044766 122044900 -75150532 + B1_Mm SINE Alu 1 114 -33 1 1516 977 212 26 10 chr1 122045275 122045470 -75149962 + ID_B1 SINE B4 7 204 -20 1 1516 275 296 14 101 chr1 122045355 122045494 -75149938 - YREP_Mm Unknown Unknown -1506 306 180 1 1516 228 366 40 24 chr1 122045841 122045967 -75149465 - MER87 LTR ERV1 -404 137 10 1 1516 492 268 39 56 chr1 122046073 122046251 -75149181 - B4A SINE B4 -110 182 8 1 1516 25 31 0 0 chr1 122046853 122046885 -75148547 + AT_rich Low_complexity Low_complexity 1 32 0 1 1516 285 98 0 0 chr1 122046892 122046933 -75148499 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1516 332 336 92 0 chr1 122047408 122047421 -75148011 + ID_B1 SINE B4 70 93 -131 1 1516 373 303 128 0 chr1 122047421 122047530 -75147902 + B1F2 SINE Alu 2 124 -25 1 1516 249 33 0 0 chr1 122047573 122047603 -75147829 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1516 383 290 98 118 chr1 122047789 122048086 -75147346 + B4A SINE B4 2 292 0 1 1516 522 280 16 0 chr1 122048419 122048544 -75146888 + B4A SINE B4 164 290 -2 1 1516 476 72 14 0 chr1 122048748 122048817 -75146615 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1516 503 250 156 0 chr1 122048821 122048949 -75146483 - RSINE1 SINE B4 -15 150 3 1 1516 522 310 64 0 chr1 122049242 122049413 -75146019 - B4 SINE B4 -102 190 9 1 1516 247 181 0 27 chr1 122049416 122049490 -75145942 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1516 313 278 43 111 chr1 122049815 122049896 -75145536 + Charlie12 DNA MER1_type 7 88 -2785 1 1516 524 253 102 0 chr1 122049896 122050082 -75145350 + B3 SINE B2 1 205 -11 1 1516 313 278 43 111 chr1 122050082 122050162 -75145270 + Charlie12 DNA MER1_type 89 157 -2716 1 1516 236 244 11 85 chr1 122050091 122050185 -75145247 - RMER30 DNA MER1_type -77 125 39 1 1516 451 344 12 0 chr1 122050385 122050545 -75144887 + RSINE1 SINE B4 4 165 0 1 1516 195 69 0 0 chr1 122050642 122050671 -75144761 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1516 1479 64 16 5 chr1 122050711 122050899 -75144533 - B2_Mm2 SINE B2 -5 190 1 1 1516 596 278 112 0 chr1 122050926 122051095 -75144337 - B3 SINE B2 -25 191 4 1 1516 279 0 0 0 chr1 122051291 122051322 -75144110 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1516 925 158 0 0 chr1 122051322 122051461 -75143971 - B1_Mus1 SINE Alu -9 139 1 1 1516 272 120 20 0 chr1 122051571 122051621 -75143811 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1516 491 229 208 90 chr1 122051641 122051886 -75143546 - B4 SINE B4 -18 274 1 1 1516 275 230 107 29 chr1 122051887 122051990 -75143442 - MER34A LTR ERV1 -55 532 422 1 1516 309 188 15 15 chr1 122052223 122052288 -75143144 - MER34A LTR ERV1 -502 69 5 1 1516 345 47 0 0 chr1 122052418 122052461 -75142971 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1516 270 0 0 0 chr1 122052461 122052490 -75142942 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1516 454 229 30 50 chr1 122052491 122052592 -75142840 - RSINE1 SINE B4 -63 102 4 1 1516 506 288 32 0 chr1 122052945 122053070 -75142362 + ID_B1 SINE B4 1 129 -95 1 1516 257 283 59 77 chr1 122053040 122053065 -75142367 + MT2B LTR ERVL 33 63 -538 1 1516 262 132 0 0 chr1 122053065 122053103 -75142329 + ID_B1 SINE B4 92 129 -95 1 1516 257 283 59 77 chr1 122053103 122053241 -75142191 + MT2B LTR ERVL 64 238 -363 1 1516 648 161 102 0 chr1 122053171 122053289 -75142143 + ID_B1 SINE B4 92 221 -3 1 1516 892 272 4 54 chr1 122053745 122053986 -75141446 + B4 SINE B4 12 240 -52 1 1516 377 236 225 0 chr1 122053995 122054084 -75141348 - ORR1E LTR MaLR -212 147 39 1 1516 685 289 85 57 chr1 122054488 122054547 -75140885 - B4 SINE B4 -2 290 239 1 1516 779 251 26 21 chr1 122054547 122054738 -75140694 - B3A SINE B2 -5 193 2 1 1516 685 289 85 57 chr1 122054738 122054960 -75140472 - B4 SINE B4 -54 238 1 1 1516 377 276 10 26 chr1 122055061 122055189 -75140243 - RSINE1 SINE B4 -31 134 8 1 1516 437 336 82 41 chr1 122055205 122055305 -75140127 - L1MC3 LINE L1 -277 7508 7398 1 1516 1053 174 124 5 chr1 122055305 122055507 -75139925 + URR1A DNA MER1_type 1 226 0 1 1516 437 336 82 41 chr1 122055507 122055651 -75139781 - L1MC3 LINE L1 -388 7397 7254 1 1516 297 0 0 0 chr1 122055701 122055734 -75139698 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1516 222 105 0 0 chr1 122055734 122055771 -75139661 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1516 761 296 24 0 chr1 122055771 122055977 -75139455 - ID_B1 SINE B4 -13 211 1 1 1516 224 336 14 14 chr1 122056255 122056261 -75139171 + (TG)n Simple_repeat Simple_repeat 1 6 0 1 1516 261 0 0 0 chr1 122056261 122056290 -75139142 + (TGG)n Simple_repeat Simple_repeat 1 29 0 1 1516 224 336 14 14 chr1 122056290 122056428 -75139004 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 1516 530 273 172 28 chr1 122056527 122056742 -75138690 - B4A SINE B4 -46 246 1 1 1516 528 331 11 29 chr1 122056907 122057081 -75138351 + ID_B1 SINE B4 54 224 0 1 1516 675 281 59 0 chr1 122057565 122057768 -75137664 + ID_B1 SINE B4 2 216 -8 1 1516 428 235 149 41 chr1 122057850 122058045 -75137387 + ID_B1 SINE B4 1 216 -8 1 1516 566 280 12 42 chr1 122058069 122058237 -75137195 + RSINE1 SINE B4 3 165 0 1 1516 966 256 28 45 chr1 122058874 122059164 -75136268 + B4 SINE B4 1 285 -7 1 1516 195 42 0 0 chr1 122059164 122059188 -75136244 + (CCCTAA)n Simple_repeat Simple_repeat 6 29 0 1 1516 231 88 0 0 chr1 122059201 122059235 -75136197 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1 1516 1227 143 20 5 chr1 122059649 122059853 -75135579 + RMER6C LTR ERVK 484 690 0 1 1516 877 199 0 0 chr1 122059867 122060013 -75135419 - B1_Mur1 SINE Alu -2 147 2 1 1516 679 265 30 35 chr1 122060139 122060342 -75135090 - B3 SINE B2 -12 204 3 1 1516 335 286 139 23 chr1 122060365 122060537 -75134895 - B3A SINE B2 -6 192 1 2 1516 256 261 29 98 chr1 122060638 122060740 -75134692 + MT2B LTR ERVL 169 263 -338 2 1516 555 240 8 16 chr1 122060650 122060777 -75134655 + ID_B1 SINE B4 99 224 0 2 1516 195 69 0 0 chr1 122061077 122061106 -75134326 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1516 626 291 12 6 chr1 122061108 122061274 -75134158 + B3 SINE B2 49 215 -1 2 1516 433 336 56 100 chr1 122061341 122061572 -75133860 + B4A SINE B4 72 292 0 2 1516 399 299 24 18 chr1 122061583 122061750 -75133682 + (CATATA)n Simple_repeat Simple_repeat 1 168 0 2 1516 542 246 104 0 chr1 122061911 122062045 -75133387 - B1_Mur2 SINE Alu -1 148 1 2 1516 25 51 0 0 chr1 122062051 122062090 -75133342 + AT_rich Low_complexity Low_complexity 1 39 0 2 1516 305 295 130 15 chr1 122062204 122062335 -75133097 + Charlie12 DNA MER1_type 30 175 -2698 1 1516 543 239 43 29 chr1 122062228 122062366 -75133066 - RMER30 DNA MER1_type -56 146 7 2 1516 281 185 15 0 chr1 122062385 122062450 -75132982 + CT-rich Low_complexity Low_complexity 1 66 0 2 1516 505 243 82 48 chr1 122062970 122063117 -75132315 + B4A SINE B4 1 152 -140 2 1516 479 246 168 35 chr1 122063539 122063682 -75131750 + RSINE1 SINE B4 4 165 0 2 1516 782 183 14 7 chr1 122063755 122063898 -75131534 + B1_Mur3 SINE Alu 1 144 -5 2 1516 314 256 0 24 chr1 122064375 122064459 -75130973 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 2 1516 781 285 77 112 chr1 122064459 122064539 -75130893 - B4A SINE B4 0 292 217 2 1516 234 0 0 0 chr1 122064539 122064565 -75130867 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1516 832 176 14 0 chr1 122064566 122064708 -75130724 - B1_Mur1 SINE Alu -5 144 1 2 1516 781 285 77 112 chr1 122064708 122064910 -75130522 - B4A SINE B4 -76 216 18 2 1516 504 279 58 0 chr1 122065013 122065167 -75130265 - RSINE1 SINE B4 0 165 3 2 1516 393 233 46 114 chr1 122065522 122065653 -75129779 - MTE2b LTR MaLR 0 379 258 2 1516 639 293 123 12 chr1 122065707 122065959 -75129473 - B4A SINE B4 -11 281 2 2 1516 766 252 93 43 chr1 122066363 122066641 -75128791 + B4A SINE B4 1 292 0 2 1516 391 343 89 57 chr1 122067380 122067446 -75127986 - B4A SINE B4 -2 290 188 2 1516 519 320 56 56 chr1 122067446 122067494 -75127938 - B3 SINE B2 -1 215 167 2 1516 396 0 0 0 chr1 122067494 122067538 -75127894 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1516 391 343 89 57 chr1 122067538 122067704 -75127728 - B4A SINE B4 -105 187 1 2 1516 757 216 158 36 chr1 122067704 122067910 -75127522 - B4A SINE B4 -59 233 1 2 1516 746 235 135 20 chr1 122068792 122069044 -75126388 + B4A SINE B4 1 281 -11 2 1516 306 0 0 0 chr1 122069068 122069102 -75126330 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1516 591 257 43 7 chr1 122069369 122069510 -75125922 + B1F SINE Alu 3 148 -1 2 1516 1288 91 0 51 chr1 122069970 122070166 -75125266 + B2_Mm2 SINE B2 1 186 -9 2 1516 680 197 66 29 chr1 122070177 122070313 -75125119 + B1_Mur2 SINE Alu 2 142 -7 2 1516 468 91 0 0 chr1 122070325 122070391 -75125041 + (TATG)n Simple_repeat Simple_repeat 1 66 0 2 1516 465 305 17 8 chr1 122070420 122070539 -75124893 - RSINE1 SINE B4 -34 131 12 2 1516 224 305 24 24 chr1 122070464 122070548 -75124884 - B2_Mm2 SINE B2 -110 85 2 2 1516 1960 195 46 31 chr1 122070632 122071045 -75124387 + MTD LTR MaLR 1 419 0 2 1516 580 160 28 9 chr1 122071143 122071249 -75124183 + B4A SINE B4 123 230 -62 2 1516 676 276 59 41 chr1 122071249 122071389 -75124043 + B3A SINE B2 1 148 -50 2 1516 333 0 0 0 chr1 122071389 122071426 -75124006 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1516 676 281 56 57 chr1 122071426 122071477 -75123955 + B3A SINE B2 147 187 -29 2 1516 506 239 53 64 chr1 122072030 122072218 -75123214 + B3A SINE B2 1 186 -12 2 1516 315 0 0 0 chr1 122072409 122072444 -75122988 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1516 915 286 51 24 chr1 122072471 122072725 -75122707 - B4 SINE B4 -6 286 26 2 1516 544 246 182 72 chr1 122073351 122073614 -75121818 + B4A SINE B4 1 292 0 2 1516 874 258 73 83 chr1 122074304 122074592 -75120840 - B4 SINE B4 0 292 8 2 1516 216 347 14 0 chr1 122074637 122074709 -75120723 - ID4_ SINE ID -3 80 8 2 1516 303 204 10 30 chr1 122074864 122074965 -75120467 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 2 1516 332 152 5 0 chr1 122074996 122075060 -75120372 - L1MA4 LINE L1 -125 6178 6113 2 1516 1998 117 95 35 chr1 122075139 122075307 -75120125 - ORR1B2 LTR MaLR 0 367 173 2 1516 2563 132 161 24 chr1 122075307 122075494 -75119938 - RMER2 LTR ERV1 -1 566 367 2 1516 486 0 0 0 chr1 122075494 122075548 -75119884 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1516 2563 132 161 24 chr1 122075548 122075858 -75119574 - RMER2 LTR ERV1 -201 366 1 2 1516 1998 117 95 35 chr1 122075858 122076035 -75119397 - ORR1B2 LTR MaLR -195 172 1 2 1516 717 244 198 50 chr1 122076051 122076293 -75119139 - B4A SINE B4 -4 288 11 2 1516 407 213 69 8 chr1 122076313 122076448 -75118984 - L1MA4 LINE L1 -364 5939 5797 2 1516 940 201 0 39 chr1 122076714 122076894 -75118538 + B4 SINE B4 55 227 -65 2 1516 701 248 73 0 chr1 122076894 122077031 -75118401 + B3 SINE B2 1 147 -69 2 1516 326 275 24 59 chr1 122077049 122077134 -75118298 + B4 SINE B4 211 292 0 2 1516 216 67 0 0 chr1 122077547 122077577 -75117855 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1516 225 0 0 0 chr1 122077679 122077704 -75117728 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1516 824 133 26 53 chr1 122077704 122077846 -75117586 - B1_Mur3 SINE Alu -8 141 3 2 1516 194 0 0 37 chr1 122077858 122077885 -75117547 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1516 579 277 77 5 chr1 122078261 122078468 -75116964 + ID_B1 SINE B4 1 222 -2 2 1516 2573 240 20 35 chr1 122078556 122078597 -75116835 - Lx5 LINE L1 0 7050 7012 2 1516 3347 33 10 0 chr1 122078597 122078989 -75116443 + MTA_Mm LTR MaLR 1 396 0 2 1516 8098 69 27 7 chr1 122078989 122080066 -75115366 + MTA_Mm-int LTR MaLR 1 1098 0 2 1516 3461 30 2 0 chr1 122080066 122080461 -75114971 + MTA_Mm LTR MaLR 1 396 0 2 1516 2573 241 19 30 chr1 122080461 122081117 -75114315 - Lx5 LINE L1 -39 7011 6457 2 1516 411 171 95 74 chr1 122081255 122081350 -75114082 - PB1D10 SINE Alu 0 117 21 2 1516 639 240 186 17 chr1 122081426 122081663 -75113769 - B4A SINE B4 -14 278 2 2 1516 411 345 0 25 chr1 122081881 122082000 -75113432 + PB1D10 SINE Alu 1 116 -1 2 1516 456 118 54 76 chr1 122082042 122082134 -75113298 + B1_Mur1 SINE Alu 60 149 0 2 1516 625 271 69 50 chr1 122082281 122082499 -75112933 + ID_B1 SINE B4 3 224 0 2 1516 582 222 247 69 chr1 122082650 122082897 -75112535 - B4A SINE B4 -1 291 1 2 1516 183 235 81 69 chr1 122083257 122083344 -75112088 + L3 LINE CR1 3234 3321 -1168 2 1516 240 35 0 0 chr1 122083553 122083582 -75111850 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1516 700 244 19 6 chr1 122084231 122084388 -75111044 - RSINE1 SINE B4 -2 163 5 2 1516 371 174 0 11 chr1 122084824 122084911 -75110521 + CT-rich Low_complexity Low_complexity 3 88 0 2 1516 650 263 129 21 chr1 122084975 122085169 -75110263 + ID_B1 SINE B4 7 221 -3 2 1516 701 305 108 12 chr1 122085245 122085494 -75109938 + B4A SINE B4 2 274 -18 2 1516 417 153 0 0 chr1 122085527 122085599 -75109833 + GA-rich Low_complexity Low_complexity 2 73 0 2 1516 993 92 0 0 chr1 122086347 122086489 -75108943 + (TGG)n Simple_repeat Simple_repeat 1 142 0 2 1516 319 340 20 13 chr1 122086497 122086646 -75108786 - RSINE1 SINE B4 -12 153 4 2 1516 917 200 7 8 chr1 122086946 122087116 -75108316 + B3A SINE B2 3 168 -30 2 1516 345 129 0 0 chr1 122087116 122087186 -75108246 + (CATA)n Simple_repeat Simple_repeat 3 72 0 2 1516 681 203 41 102 chr1 122087186 122087212 -75108220 + B2_Mm2 SINE B2 165 187 -8 2 1516 292 228 90 45 chr1 122087219 122087352 -75108080 + L1M5 LINE L1 5199 5337 -809 2 1516 489 92 0 0 chr1 122087425 122087501 -75107931 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1516 577 184 18 9 chr1 122088017 122088127 -75107305 + RSINE1 SINE B4 5 115 -50 2 1516 1715 204 62 3 chr1 122088145 122088503 -75106929 + MTEa LTR MaLR 1 379 0 2 1516 545 291 67 17 chr1 122088897 122089075 -75106357 - ID_B1 SINE B4 -26 198 12 2 1516 644 298 6 0 chr1 122089140 122089301 -75106131 + RSINE1 SINE B4 2 163 -2 2 1516 344 271 82 0 chr1 122089873 122089958 -75105474 - B4 SINE B4 -79 213 122 2 1516 324 0 0 0 chr1 122090017 122090053 -75105379 + (TATG)n Simple_repeat Simple_repeat 3 38 0 2 1516 461 242 138 87 chr1 122090060 122090336 -75105096 - B4A SINE B4 -2 290 1 2 1516 265 284 0 58 chr1 122091026 122091112 -75104320 + B4A SINE B4 14 94 -198 2 1516 1004 190 77 0 chr1 122091114 122091309 -75104123 + B3 SINE B2 2 211 -5 2 1516 729 248 15 0 chr1 122091334 122091471 -75103961 + RSINE1 SINE B4 3 141 -24 2 1516 414 0 0 0 chr1 122091474 122091520 -75103912 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1516 975 203 56 5 chr1 122091850 122092063 -75103369 + ID_B1 SINE B4 1 224 0 2 1516 782 255 78 82 chr1 122092783 122093003 -75102429 + B4A SINE B4 4 222 -70 2 1516 735 328 5 11 chr1 122093003 122093194 -75102238 + B3A SINE B2 2 191 -7 2 1516 340 229 0 0 chr1 122093209 122093270 -75102162 + B4A SINE B4 216 276 -16 2 1516 296 111 0 18 chr1 122093288 122093343 -75102089 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1516 326 169 14 58 chr1 122094184 122094253 -75101179 - HAL1-3A_ME LINE L1 -821 2037 1972 2 1516 219 217 0 0 chr1 122094256 122094316 -75101116 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1516 704 244 131 19 chr1 122094320 122094579 -75100853 - B4A SINE B4 -4 288 1 2 1516 540 322 108 24 chr1 122095042 122095294 -75100138 - MT2A LTR ERVL -24 509 231 2 1516 189 107 0 0 chr1 122095294 122095322 -75100110 + (CAG)n Simple_repeat Simple_repeat 3 30 0 2 1516 540 330 83 66 chr1 122095322 122095403 -75100029 - MT2A LTR ERVL -266 254 186 2 1516 298 313 0 0 chr1 122095423 122095522 -75099910 - Lx8 LINE L1 -4 7469 7371 2 1516 588 84 0 0 chr1 122095547 122095630 -75099802 + (TTTA)n Simple_repeat Simple_repeat 1 83 0 2 1516 1416 229 49 3 chr1 122095676 122096005 -75099427 - Lx8 LINE L1 -358 7115 6772 2 1516 309 367 78 0 chr1 122096037 122096165 -75099267 - MTEa LTR MaLR -239 140 3 3 1516 750 199 26 72 chr1 122096407 122096602 -75098830 + B3A SINE B2 2 187 -11 3 1516 426 269 42 14 chr1 122096775 122096918 -75098514 + B4 SINE B4 142 288 -4 3 1516 1208 98 75 0 chr1 122096967 122097141 -75098291 + B2_Mm2 SINE B2 1 187 -8 3 1516 503 206 9 36 chr1 122097273 122097384 -75098048 + RSINE1 SINE B4 3 110 -55 3 1516 288 53 0 0 chr1 122097411 122097449 -75097983 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 3 1516 248 310 49 20 chr1 122098132 122098234 -75097198 - MER2 DNA MER2_type -32 313 209 3 1516 262 306 0 0 chr1 122098234 122098306 -75097126 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1516 372 295 28 5 chr1 122098306 122098465 -75096967 - B4 SINE B4 0 292 85 3 1516 211 53 0 95 chr1 122098471 122098513 -75096919 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1516 1831 227 86 30 chr1 122099473 122099972 -75095460 - RMER5 LTR ERV1 -5 529 3 3 1516 750 244 24 12 chr1 122100854 122101020 -75094412 + B3A SINE B2 1 168 -30 3 1516 225 0 0 0 chr1 122101025 122101050 -75094382 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1516 459 0 0 0 chr1 122101050 122101100 -75094332 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1516 416 19 19 0 chr1 122101145 122101198 -75094234 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1516 637 279 10 76 chr1 122101217 122101374 -75094058 - B4 SINE B4 -2 290 137 3 1516 603 276 75 5 chr1 122101374 122101560 -75093872 - B3 SINE B2 -14 202 4 3 1516 637 279 10 76 chr1 122101560 122101600 -75093832 - B4 SINE B4 -156 136 106 3 1516 555 16 0 0 chr1 122102122 122102186 -75093246 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1516 414 0 0 0 chr1 122102301 122102347 -75093085 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1516 288 0 0 0 chr1 122102347 122102378 -75093054 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1516 981 229 55 8 chr1 122102392 122102630 -75092802 - B4A SINE B4 -43 249 1 3 1516 795 184 207 0 chr1 122102661 122102840 -75092592 + B3 SINE B2 1 216 0 3 1516 588 234 39 7 chr1 122103131 122103286 -75092146 - RSINE1 SINE B4 -2 163 4 3 1516 733 184 12 0 chr1 122103344 122103512 -75091920 + GA-rich Low_complexity Low_complexity 1 170 0 3 1516 336 24 0 0 chr1 122103682 122103723 -75091709 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1516 639 193 28 0 chr1 122103723 122103832 -75091600 - RSINE1 SINE B4 -53 112 1 3 1516 1128 222 9 0 chr1 122104512 122104728 -75090704 + ORR1D1 LTR MaLR 157 374 0 3 1516 1413 208 82 10 chr1 122104728 122105028 -75090404 - MTE2b LTR MaLR -38 341 20 3 1516 402 57 0 0 chr1 122105051 122105104 -75090328 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1516 2254 103 25 1 chr1 122105801 122106155 -75089277 - ORR1A4 LTR MaLR 0 394 1 3 1516 241 48 23 45 chr1 122106222 122106266 -75089166 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1516 1116 70 0 0 chr1 122106272 122106414 -75089018 - B1_Mus1 SINE Alu -1 147 6 3 1516 554 213 38 113 chr1 122106274 122106433 -75088999 - B4 SINE B4 -69 223 77 3 1516 577 250 20 13 chr1 122107184 122107334 -75088098 - RSINE1 SINE B4 -3 162 12 3 1516 572 241 94 0 chr1 122107897 122108100 -75087332 + ID_B1 SINE B4 2 223 -1 3 1516 252 0 0 0 chr1 122108140 122108168 -75087264 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 1516 600 297 13 7 chr1 122108205 122108354 -75087078 + RSINE1 SINE B4 16 165 0 3 1516 23 68 0 0 chr1 122108357 122108401 -75087031 + AT_rich Low_complexity Low_complexity 1 44 0 3 1516 729 154 87 0 chr1 122108552 122108684 -75086748 - B1_Mur4 SINE Alu 0 150 2 3 1516 307 308 172 56 chr1 122108703 122108971 -75086461 - L1ME3B LINE L1 -248 5992 5694 3 1516 462 235 24 0 chr1 122108996 122109081 -75086351 - RSINE1 SINE B4 -1 164 78 3 1516 444 290 19 9 chr1 122109324 122109432 -75086000 + PB1D7 SINE Alu 7 115 -5 3 1516 228 274 96 0 chr1 122109439 122109512 -75085920 + B4 SINE B4 18 97 -195 3 1516 974 73 81 0 chr1 122109558 122109694 -75085738 - B1_Mus2 SINE Alu 0 147 1 3 1516 329 108 0 15 chr1 122109694 122109760 -75085672 - L1_Mus3 LINE L1 -5 6633 6569 3 1516 869 250 30 25 chr1 122109763 122109960 -75085472 + B3 SINE B2 17 214 -2 3 1516 380 267 97 22 chr1 122109966 122110100 -75085332 + B4 SINE B4 85 228 -64 3 1516 1200 62 0 0 chr1 122110100 122110246 -75085186 + B1_Mm SINE Alu 1 146 -1 3 1516 317 43 0 21 chr1 122110246 122110294 -75085138 + (TAAAAA)n Simple_repeat Simple_repeat 1 47 0 3 1516 432 97 0 0 chr1 122110286 122110348 -75085084 + (GGAAA)n Simple_repeat Simple_repeat 3 64 0 3 1516 206 321 12 12 chr1 122110406 122110425 -75085007 + (CA)n Simple_repeat Simple_repeat 2 20 0 3 1516 4152 145 34 7 chr1 122110425 122111099 -75084333 + RLTR17 LTR ERVK 1 692 0 3 1516 206 321 12 12 chr1 122111099 122111161 -75084271 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1516 258 244 70 0 chr1 122111184 122111270 -75084162 - L1M4 LINE L1 -6373 169 78 3 1516 222 150 0 0 chr1 122111312 122111352 -75084080 + (TCC)n Simple_repeat Simple_repeat 1 40 0 3 1516 1195 68 7 0 chr1 122111658 122111804 -75083628 + B1_Mus2 SINE Alu 1 147 0 3 1516 221 0 0 33 chr1 122111807 122111837 -75083595 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1516 525 250 0 0 chr1 122112109 122112217 -75083215 - ID_B1 SINE B4 -26 198 91 3 1516 396 226 314 0 chr1 122112342 122112466 -75082966 + RSINE1 SINE B4 3 165 0 3 1516 186 133 0 0 chr1 122112472 122112502 -75082930 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1516 21 0 0 0 chr1 122112515 122112536 -75082896 + AT_rich Low_complexity Low_complexity 1 21 0 3 1516 281 305 24 0 chr1 122112592 122112674 -75082758 - MER104 DNA Tc2 -97 84 1 3 1516 364 263 144 0 chr1 122112678 122112796 -75082636 - L1M5 LINE L1 -1291 4855 4721 3 1516 224 304 12 71 chr1 122113036 122113121 -75082311 - RSINE1 SINE B4 0 165 86 3 1516 1032 209 43 5 chr1 122113240 122113447 -75081985 - B3 SINE B2 -1 215 1 3 1516 499 154 11 11 chr1 122113447 122113539 -75081893 - B4A SINE B4 -196 96 5 3 1516 318 296 43 9 chr1 122113575 122113691 -75081741 + MER74A LTR ERVL 180 299 -259 3 1516 343 278 238 53 chr1 122113874 122114155 -75081277 - L1M5 LINE L1 -1505 4641 4309 3 1516 854 206 51 32 chr1 122114204 122114420 -75081012 - ID_B1 SINE B4 -4 220 1 3 1516 239 261 0 0 chr1 122114707 122114772 -75080660 - ID4 SINE ID -17 66 2 3 1516 309 109 0 0 chr1 122114879 122114925 -75080507 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1516 372 220 30 10 chr1 122114936 122115037 -75080395 - MLT1A1 LTR MaLR -1 407 305 3 1516 753 247 82 112 chr1 122115245 122115514 -75079918 - B4 SINE B4 -8 284 24 3 1516 2208 131 93 13 chr1 122115517 122115905 -75079527 + MTC LTR MaLR 1 419 -2 3 1516 814 57 8 8 chr1 122116118 122116243 -75079189 - L1_Mus2 LINE L1 -1 6565 6441 3 1516 2271 49 0 7 chr1 122116243 122116532 -75078900 + L1_Mus2 LINE L1 6082 6368 -198 3 1516 330 198 11 13 chr1 122116532 122116623 -75078809 + MTD LTR MaLR 331 417 -2 3 1516 194 139 0 44 chr1 122116646 122116691 -75078741 + (CACG)n Simple_repeat Simple_repeat 4 46 0 3 1516 36 0 0 0 chr1 122116691 122116727 -75078705 + AT_rich Low_complexity Low_complexity 1 36 0 3 1516 345 237 13 74 chr1 122116727 122116881 -75078551 - B3A SINE B2 -1 197 1 3 1516 24 53 0 0 chr1 122117325 122117363 -75078069 + AT_rich Low_complexity Low_complexity 1 38 0 3 1516 251 286 122 58 chr1 122117476 122117665 -75077767 - Lx8 LINE L1 0 7473 7273 3 1516 356 289 120 72 chr1 122117815 122118024 -75077408 - B4 SINE B4 -25 267 49 3 1516 373 151 10 2 chr1 122118327 122118399 -75077033 - RSINE1 SINE B4 -202 90 15 3 1516 442 270 95 0 chr1 122118533 122118659 -75076773 - ID_B1 SINE B4 -3 221 84 3 1516 636 203 60 0 chr1 122118704 122118837 -75076595 + B1_Mur1 SINE Alu 1 141 -8 3 1516 312 221 125 66 chr1 122119188 122119217 -75076215 - HAL1-3A_ME LINE L1 -746 2112 2084 3 1516 615 194 235 0 chr1 122119217 122119387 -75076045 - B3 SINE B2 -6 210 1 3 1516 312 221 125 66 chr1 122119387 122119493 -75075939 - HAL1-3A_ME LINE L1 -775 2083 1969 3 1516 337 213 12 0 chr1 122119493 122119662 -75075770 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 1516 562 273 64 0 chr1 122119671 122119843 -75075589 - B3A SINE B2 -15 183 1 3 1516 846 202 122 0 chr1 122119900 122120088 -75075344 - B3 SINE B2 -5 211 1 3 1516 1395 248 83 39 chr1 122120115 122120526 -75074906 - Lx8 LINE L1 -5 7468 7040 3 1516 423 296 123 7 chr1 122120751 122120865 -75074567 + RSINE1 SINE B4 1 126 -39 3 1516 300 102 0 0 chr1 122120865 122120914 -75074518 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1516 423 296 123 7 chr1 122120914 122120945 -75074487 + RSINE1 SINE B4 127 162 -3 3 1516 216 0 0 0 chr1 122122863 122122887 -75072545 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1516 336 205 190 36 chr1 122122890 122123027 -75072405 - Tigger7 DNA MER2_type -82 2409 2252 3 1516 261 83 0 0 chr1 122123066 122123102 -75072330 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 3 1516 521 225 18 9 chr1 122124586 122124698 -75070734 - RSINE1 SINE B4 -52 113 1 3 1516 378 274 20 0 chr1 122124718 122124820 -75070612 - ID_B1 SINE B4 -7 217 114 3 1516 250 273 30 0 chr1 122124821 122124887 -75070545 - ID4 SINE ID -11 72 5 3 1516 417 70 0 0 chr1 122125410 122125467 -75069965 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1516 571 328 58 35 chr1 122125468 122125727 -75069705 - B4A SINE B4 -23 269 5 3 1516 235 305 14 21 chr1 122125780 122125882 -75069550 + B1_Mur1 SINE Alu 14 145 -4 3 1516 364 299 40 46 chr1 122125951 122126126 -75069306 - MER5B DNA MER1_type -3 175 2 4 1516 1046 219 9 18 chr1 122127105 122127328 -75068104 + ID_B1 SINE B4 2 222 -2 4 1516 657 241 43 33 chr1 122127340 122127550 -75067882 + ID_B1 SINE B4 1 212 -12 4 1516 755 122 0 8 chr1 122127550 122127682 -75067750 + (CAAAC)n Simple_repeat Simple_repeat 5 135 0 4 1516 224 326 20 20 chr1 122129706 122129806 -75065626 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 4 1516 1120 56 33 8 chr1 122129828 122130236 -75065196 + (TCTA)n Simple_repeat Simple_repeat 1 418 0 4 1516 864 230 0 44 chr1 122131129 122131334 -75064098 + B3A SINE B2 3 198 0 4 1516 784 152 40 0 chr1 122131342 122131467 -75063965 + B1_Mur4 SINE Alu 3 132 -18 4 1516 494 245 0 0 chr1 122131597 122131703 -75063729 + PB1D10 SINE Alu 1 106 -11 4 1516 962 186 19 42 chr1 122132588 122132801 -75062631 - ID_B1 SINE B4 -1 223 16 4 1516 672 245 46 20 chr1 122133317 122133513 -75061919 - B4 SINE B4 -91 201 1 4 1516 771 262 16 11 chr1 122134278 122134463 -75060969 + B4 SINE B4 45 230 -62 4 1516 2097 122 12 9 chr1 122134531 122134871 -75060561 + ORR1B1 LTR MaLR 41 381 -13 4 1516 284 290 103 16 chr1 122135216 122135342 -75060090 + B1F SINE Alu 3 139 -10 4 1516 315 217 0 0 chr1 122135387 122135447 -75059985 + ID4_ SINE ID 1 60 -23 4 1516 1225 27 0 0 chr1 122135479 122135625 -75059807 - B1_Mus2 SINE Alu 0 147 2 4 1516 300 111 0 0 chr1 122135674 122135719 -75059713 + (CAG)n Simple_repeat Simple_repeat 1 45 0 4 1516 936 194 22 27 chr1 122135844 122136066 -75059366 - ID_B1 SINE B4 -2 222 2 4 1516 231 36 0 0 chr1 122136199 122136227 -75059205 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 4 1516 232 266 68 31 chr1 122136295 122136431 -75059001 + MIR SINE MIR 29 171 -91 4 1516 396 233 0 22 chr1 122137136 122137228 -75058204 + B4 SINE B4 4 93 -199 4 1516 612 311 6 43 chr1 122137357 122137583 -75057849 + B4 SINE B4 66 282 -10 4 1516 432 0 0 0 chr1 122137814 122137862 -75057570 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1516 262 186 17 17 chr1 122139181 122139241 -75056191 - MIRb SINE MIR -91 177 118 4 1516 1257 234 57 101 chr1 122139428 122139852 -75055580 + MTD LTR MaLR 1 405 -14 4 1516 611 294 48 76 chr1 122139893 122140103 -75055329 - B4A SINE B4 -88 204 1 4 1516 510 266 181 8 chr1 122141096 122141339 -75054093 + B4A SINE B4 8 292 0 4 1516 782 280 85 11 chr1 122141518 122141778 -75053654 + B4A SINE B4 8 286 -6 4 1516 447 19 0 0 chr1 122141780 122141832 -75053600 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1516 423 0 0 0 chr1 122142083 122142130 -75053302 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1516 222 319 0 68 chr1 122142837 122142911 -75052521 - ID2 SINE ID -13 70 2 4 1516 449 299 88 40 chr1 122143003 122143254 -75052178 - B4 SINE B4 -23 269 7 4 1516 887 218 17 52 chr1 122143261 122143493 -75051939 - ID_B1 SINE B4 0 224 1 4 1516 787 324 88 44 chr1 122143691 122144014 -75051418 + L1MB7 LINE L1 5514 5873 -311 4 1516 348 316 9 0 chr1 122144014 122144128 -75051304 + PB1D10 SINE Alu 2 116 -1 4 1516 787 324 88 44 chr1 122144128 122144373 -75051059 + L1MB7 LINE L1 5874 6107 -77 4 1516 514 259 52 46 chr1 122144410 122144604 -75050828 + B3A SINE B2 4 198 0 4 1516 250 275 43 21 chr1 122145203 122145296 -75050136 + MLT1A1 LTR MaLR 6 100 -308 4 1516 666 227 95 21 chr1 122145298 122145487 -75049945 + B4 SINE B4 1 203 -89 4 1516 6302 122 56 19 chr1 122146022 122147106 -75048326 + Lx4A LINE L1 5934 7058 0 4 1516 529 165 11 0 chr1 122147215 122147306 -75048126 + RSINE1 SINE B4 21 112 -53 4 1516 776 230 66 33 chr1 122147662 122147873 -75047559 + ID_B1 SINE B4 3 220 -4 4 1516 904 188 133 0 chr1 122148016 122148234 -75047198 - MTD LTR MaLR -172 247 1 4 1516 375 264 113 24 chr1 122148234 122148353 -75047079 + ID_B1 SINE B4 35 164 -60 4 1516 268 286 0 67 chr1 122148292 122148382 -75047050 + PB1D10 SINE Alu 25 108 -9 4 1516 941 240 180 21 chr1 122148730 122149019 -75046413 + MTE2b LTR MaLR 9 343 -36 4 1516 261 0 0 0 chr1 122149698 122149727 -75045705 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1516 926 246 83 39 chr1 122149739 122150102 -75045330 - MTE2b LTR MaLR 0 379 1 4 1516 297 269 39 0 chr1 122150840 122150918 -75044514 + MIRm SINE MIR 196 276 0 4 1516 249 152 0 57 chr1 122151038 122151108 -75044324 + CT-rich Low_complexity Low_complexity 1 66 0 4 1516 785 185 0 27 chr1 122151256 122151398 -75044034 + B1_Mur2 SINE Alu 2 142 -7 4 1516 207 0 0 0 chr1 122151398 122151421 -75044011 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1516 304 233 21 75 chr1 122151446 122151539 -75043893 - MTD LTR MaLR -30 389 302 4 1516 454 220 0 0 chr1 122151547 122151638 -75043794 - MERVL_2A-int LTR ERVL -5464 297 207 4 1516 1344 218 41 103 chr1 122151640 122152029 -75043403 - MT2A LTR ERVL -73 460 96 4 1516 567 227 31 8 chr1 122152035 122152164 -75043268 + B1_Mur1 SINE Alu 18 149 0 4 1516 285 283 18 36 chr1 122152146 122152256 -75043176 - MT2A LTR ERVL -424 109 2 4 1516 674 192 40 14 chr1 122152282 122152430 -75043002 + B4 SINE B4 1 152 -140 4 1516 272 253 38 0 chr1 122152522 122152601 -75042831 + (CATA)n Simple_repeat Simple_repeat 1 82 0 4 1516 407 244 253 18 chr1 122152842 122153063 -75042369 + B4A SINE B4 2 274 -18 4 1516 392 293 8 17 chr1 122153214 122153332 -75042100 - Tigger5 DNA MER2_type -2287 119 3 4 1516 715 315 18 5 chr1 122154069 122154286 -75041146 + ID_B1 SINE B4 5 224 0 4 1516 1071 84 0 0 chr1 122154512 122154758 -75040674 + (CA)n Simple_repeat Simple_repeat 1 246 0 4 1516 531 268 108 11 chr1 122156609 122156794 -75038638 - ID_B1 SINE B4 -17 207 5 4 1516 273 232 29 0 chr1 122157997 122158066 -75037366 + ID4 SINE ID 2 72 -11 4 1516 192 205 0 0 chr1 122158382 122158421 -75037011 + MIR SINE MIR 218 256 -6 4 1516 280 341 93 14 chr1 122158846 122158986 -75036446 + RSINE1 SINE B4 12 162 -3 4 1517 917 234 63 5 chr1 122159476 122159699 -75035733 + B4 SINE B4 6 241 -51 4 1517 188 361 24 12 chr1 122160383 122160467 -75034965 - L2b LINE L2 -5 3370 3286 4 1517 1039 252 17 10 chr1 122160557 122160846 -75034586 + B4A SINE B4 2 292 0 4 1517 185 294 56 56 chr1 122161084 122161174 -75034258 + MIRb SINE MIR 178 267 -1 4 1517 837 253 56 8 chr1 122162884 122163151 -75032281 - B4A SINE B4 -12 280 1 4 1517 281 267 32 57 chr1 122163154 122163277 -75032155 - PB1D7 SINE Alu 0 120 1 4 1517 363 254 169 15 chr1 122163404 122163540 -75031892 + RSINE1 SINE B4 3 159 -6 4 1517 985 220 152 20 chr1 122163997 122164247 -75031185 + B4 SINE B4 6 288 -4 4 1517 408 111 0 0 chr1 122164254 122164317 -75031115 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1517 1893 133 54 74 chr1 122165275 122165681 -75029751 + RMER10B LTR ERVL 1 398 0 4 1517 236 254 149 0 chr1 122165756 122165823 -75029609 + RSINE1 SINE B4 2 78 -87 4 1517 417 20 0 0 chr1 122165840 122165890 -75029542 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1517 546 304 42 68 chr1 122166212 122166448 -75028984 + B4A SINE B4 2 231 -61 4 1517 303 28 0 0 chr1 122166461 122166497 -75028935 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1517 481 235 0 70 chr1 122167139 122167267 -75028165 + PB1D9 SINE Alu 1 119 -1 4 1517 221 190 0 23 chr1 122167356 122167399 -75028033 + RSINE1 SINE B4 96 137 -28 4 1517 288 0 0 0 chr1 122167412 122167444 -75027988 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 4 1517 418 198 44 0 chr1 122168753 122168844 -75026588 - RMER15 LTR ERVL 0 575 481 4 1517 228 288 0 0 chr1 122168898 122168964 -75026468 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1517 1160 186 117 76 chr1 122168964 122169425 -75026007 - RMER15 LTR ERVL -55 546 1 4 1517 542 96 0 0 chr1 122169429 122169502 -75025930 - ORR1C2 LTR MaLR 0 384 312 4 1517 1103 63 0 0 chr1 122169503 122169645 -75025787 + B1_Mm SINE Alu 6 147 0 4 1517 257 65 65 0 chr1 122169667 122169713 -75025719 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1517 1298 165 165 21 chr1 122169724 122169847 -75025585 - ORR1C2 LTR MaLR -58 326 196 4 1517 540 0 0 0 chr1 122169847 122169907 -75025525 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1517 1298 165 165 21 chr1 122169907 122170068 -75025364 - ORR1C2 LTR MaLR -189 195 1 4 1517 1809 211 108 3 chr1 122170075 122170464 -75024968 - RMER15 LTR ERVL -145 430 1 4 1517 727 253 111 20 chr1 122170937 122171135 -75024297 + ID_B1 SINE B4 6 221 -3 4 1517 183 250 0 0 chr1 122171556 122171608 -75023824 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1517 557 294 98 53 chr1 122171640 122171906 -75023526 - B4 SINE B4 -14 278 1 4 1517 198 0 0 0 chr1 122172433 122172455 -75022977 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1517 1148 30 0 0 chr1 122172455 122172587 -75022845 - B1_Mus2 SINE Alu -11 136 5 4 1517 236 281 0 30 chr1 122172646 122172712 -75022720 + tRNA-Ala-GCY_ tRNA tRNA 5 68 -7 4 1517 316 242 0 29 chr1 122172653 122172721 -75022711 + ID4_ SINE ID 18 83 0 4 1517 2365 84 15 58 chr1 122172762 122173104 -75022328 + ORR1A2 LTR MaLR 1 327 0 4 1517 389 279 56 21 chr1 122173455 122173598 -75021834 - B1F1 SINE Alu -1 148 1 4 1517 378 0 0 0 chr1 122173937 122173979 -75021453 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1517 982 169 16 32 chr1 122174225 122174415 -75021017 - RLTR16 LTR ERVK 0 505 319 4 1517 705 191 66 0 chr1 122174406 122174542 -75020890 + B3 SINE B2 72 216 0 4 1517 241 248 63 71 chr1 122174654 122174780 -75020652 + RMER15 LTR ERVL 3 127 -448 4 1517 2070 122 109 36 chr1 122174782 122175139 -75020293 + ORR1B1 LTR MaLR 4 386 -8 4 1517 427 253 62 98 chr1 122175246 122175439 -75019993 + RMER15 LTR ERVL 388 573 -2 4 1517 409 253 84 26 chr1 122175718 122175872 -75019560 + B2_Mm2 SINE B2 1 163 -32 5 1517 1670 42 0 0 chr1 122176084 122176277 -75019155 + B2_Mm1a SINE B2 1 193 0 5 1517 1176 101 0 6 chr1 122176277 122176446 -75018986 + B2_Mm2 SINE B2 28 195 0 5 1517 594 50 0 70 chr1 122176446 122176575 -75018857 + (GAA)n Simple_repeat Simple_repeat 1 120 0 5 1517 867 279 83 116 chr1 122176759 122176796 -75018636 - MT2A LTR ERVL -7 594 551 5 1517 519 95 0 0 chr1 122176796 122176870 -75018562 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1517 1045 217 72 76 chr1 122176870 122177254 -75018178 - MT2A LTR ERVL -51 550 90 5 1517 285 228 0 0 chr1 122178380 122178459 -75016973 + (CAT)n Simple_repeat Simple_repeat 2 80 0 5 1517 862 249 60 0 chr1 122178462 122178663 -75016769 - ID_B1 SINE B4 -8 216 4 5 1517 288 77 0 0 chr1 122178674 122178713 -75016719 + (CAT)n Simple_repeat Simple_repeat 1 39 0 5 1517 1139 85 0 6 chr1 122178882 122179048 -75016384 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 5 1517 428 295 45 23 chr1 122179048 122179180 -75016252 - B1F SINE Alu -14 135 1 5 1517 802 213 0 0 chr1 122179393 122179534 -75015898 + B1_Mur2 SINE Alu 2 142 -7 5 1517 401 0 0 20 chr1 122179768 122179818 -75015614 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1517 1343 180 50 101 chr1 122179990 122180524 -75014908 - MTC LTR MaLR -2 419 1 5 1517 378 91 0 0 chr1 122180794 122180849 -75014583 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1517 706 221 10 3 chr1 122181784 122182084 -75013348 + (TCCA)n Simple_repeat Simple_repeat 1 301 0 5 1517 284 352 0 0 chr1 122182086 122182194 -75013238 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 5 1517 666 0 0 0 chr1 122182378 122182452 -75012980 + (TTC)n Simple_repeat Simple_repeat 2 75 0 5 1517 876 99 254 7 chr1 122182452 122182594 -75012838 - B2_Mm2 SINE B2 -17 178 2 5 1517 184 245 37 19 chr1 122182663 122182680 -75012752 + MIRb SINE MIR 174 190 -78 5 1517 1849 152 40 144 chr1 122182680 122183102 -75012330 + ORR1C1 LTR MaLR 1 378 0 5 1517 184 245 37 19 chr1 122183102 122183138 -75012294 + MIRb SINE MIR 191 228 -40 5 1517 573 42 0 0 chr1 122183352 122183424 -75012008 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1517 228 277 31 0 chr1 122183667 122183732 -75011700 + MLT1J LTR MaLR 312 378 -134 5 1517 630 224 14 29 chr1 122183889 122184027 -75011405 + MTEa LTR MaLR 194 329 -50 5 1517 2081 161 30 20 chr1 122184998 122185205 -75010227 - RMER10B LTR ERVL 0 398 187 5 1517 332 73 36 0 chr1 122185205 122185260 -75010172 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 5 1517 2081 161 30 20 chr1 122185260 122185446 -75009986 - RMER10B LTR ERVL -212 186 2 5 1517 418 288 0 25 chr1 122185446 122185567 -75009865 + MTD LTR MaLR 27 144 -275 5 1517 459 0 0 0 chr1 122186145 122186196 -75009236 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1517 805 229 89 19 chr1 122187151 122187365 -75008067 + ORR1E LTR MaLR 10 238 -121 5 1517 303 28 0 0 chr1 122187536 122187572 -75007860 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1517 474 255 121 0 chr1 122187756 122187905 -75007527 + MTEa LTR MaLR 18 184 -195 5 1517 780 228 87 27 chr1 122188040 122188168 -75007264 + MTEa LTR MaLR 172 313 -66 5 1517 198 71 0 0 chr1 122188168 122188196 -75007236 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1517 842 180 14 7 chr1 122188197 122188337 -75007095 - B1_Mus2 SINE Alu -6 141 1 5 1517 780 228 87 27 chr1 122188337 122188391 -75007041 + MTEa LTR MaLR 314 367 -12 5 1517 2045 166 52 18 chr1 122188401 122188782 -75006650 - ORR1B1 LTR MaLR 0 394 1 5 1517 591 305 0 31 chr1 122188941 122188995 -75006437 + RSINE1 SINE B4 4 57 -108 5 1517 2418 90 231 0 chr1 122188995 122189427 -75006005 - RLTR47_MM LTR ERV1 0 532 1 5 1517 591 305 0 31 chr1 122189427 122189531 -75005901 + RSINE1 SINE B4 58 157 -8 5 1517 2361 127 42 93 chr1 122189834 122190286 -75005146 + RLTR23 LTR ERV1 2 430 0 5 1517 1076 245 117 45 chr1 122190425 122190758 -75004674 + ORR1E LTR MaLR 1 357 -2 5 1517 225 224 0 0 chr1 122191020 122191078 -75004354 + CT-rich Low_complexity Low_complexity 2 59 0 5 1517 939 295 0 0 chr1 122191081 122191305 -75004127 - ID_B1 SINE B4 0 224 1 5 1517 356 59 20 0 chr1 122191452 122191503 -75003929 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5 1517 718 235 13 45 chr1 122191518 122191674 -75003758 - RSINE1 SINE B4 0 165 15 5 1517 304 235 15 0 chr1 122191721 122191789 -75003643 + ID4 SINE ID 4 72 -11 5 1517 346 322 92 27 chr1 122192407 122192592 -75002840 - RMER15 LTR ERVL -65 510 314 5 1517 419 216 36 73 chr1 122192842 122192952 -75002480 - MT2B LTR ERVL -329 272 167 5 1517 766 43 0 0 chr1 122192861 122192954 -75002478 - B1_Mm SINE Alu -54 93 1 5 1517 433 246 67 17 chr1 122193013 122193133 -75002299 - MER3 DNA MER1_type -14 195 70 5 1517 439 291 14 43 chr1 122193343 122193483 -75001949 + RSINE1 SINE B4 6 141 -24 5 1517 243 302 97 36 chr1 122193483 122193508 -75001924 + B2_Mm2 SINE B2 5 179 -16 5 1517 600 287 19 0 chr1 122193620 122193777 -75001655 + B3A SINE B2 35 194 -4 5 1517 311 318 47 0 chr1 122195033 122195140 -75000292 - RMER15 LTR ERVL 0 575 464 5 1517 203 111 0 69 chr1 122195455 122195481 -74999951 + T-rich Low_complexity Low_complexity 30 54 0 5 1517 1643 42 0 0 chr1 122195481 122195673 -74999759 - B2_Mm1a SINE B2 -1 192 1 5 1517 203 111 0 69 chr1 122195673 122195704 -74999728 + T-rich Low_complexity Low_complexity 1 29 0 5 1517 228 203 78 0 chr1 122195705 122195769 -74999663 - L1M2 LINE L1 -3330 2813 2745 5 1517 33 25 0 0 chr1 122195879 122195919 -74999513 + AT_rich Low_complexity Low_complexity 1 40 0 5 1517 713 256 18 18 chr1 122196613 122196780 -74998652 + ORR1E LTR MaLR 1 167 -192 5 1517 450 339 78 12 chr1 122196849 122197016 -74998416 + ID_B1 SINE B4 32 209 -15 5 1517 939 177 0 0 chr1 122197254 122197418 -74998014 - Lx7 LINE L1 -583 7113 6950 5 1517 1351 201 122 4 chr1 122197547 122197826 -74997606 - MTD LTR MaLR -2 417 106 5 1517 435 157 0 0 chr1 122197838 122197927 -74997505 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1517 621 305 126 8 chr1 122197930 122198191 -74997241 - B4A SINE B4 0 292 1 5 1517 970 339 68 39 chr1 122198224 122198626 -74996806 + MER20B DNA MER1_type 181 613 -170 5 1517 307 308 0 0 chr1 122198626 122198704 -74996728 - ID4 SINE ID -1 82 5 5 1517 970 339 68 39 chr1 122198704 122198847 -74996585 + MER20B DNA MER1_type 614 742 -41 5 1517 304 284 53 44 chr1 122199141 122199255 -74996177 + YREP_Mm Unknown Unknown 152 266 -1546 5 1517 484 243 76 56 chr1 122199167 122199311 -74996121 - B1F SINE Alu -2 147 1 5 1517 274 268 163 10 chr1 122199317 122199415 -74996017 - PB1D7 SINE Alu -5 115 3 5 1517 351 102 16 63 chr1 122199994 122200057 -74995375 + B1_Mus1 SINE Alu 1 60 -88 5 1517 274 0 0 159 chr1 122200058 122200196 -74995236 + (CAGAG)n Simple_repeat Simple_repeat 5 120 0 5 1517 550 191 0 21 chr1 122200199 122200295 -74995137 + B1_Mur1 SINE Alu 42 135 -14 5 1517 213 39 0 0 chr1 122200297 122200323 -74995109 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1517 527 212 143 8 chr1 122200342 122200461 -74994971 + B4A SINE B4 6 140 -152 5 1517 313 282 84 53 chr1 122200581 122200712 -74994720 - Tigger5 DNA MER2_type -54 2352 2218 5 1517 940 277 14 0 chr1 122200739 122200952 -74994480 - ID_B1 SINE B4 -7 217 2 5 1517 346 297 76 48 chr1 122201119 122201146 -74994286 + B1F SINE Alu 1 114 -35 5 1517 531 222 27 36 chr1 122201146 122201258 -74994174 + ID_B1 SINE B4 108 218 -6 5 1517 1208 188 5 0 chr1 122201341 122201549 -74993883 + B3 SINE B2 1 209 -7 5 1517 186 43 0 0 chr1 122201674 122201697 -74993735 + (TTG)n Simple_repeat Simple_repeat 1 23 0 5 1517 520 298 0 24 chr1 122201697 122201851 -74993581 - RSINE1 SINE B4 -12 153 3 5 1517 244 304 101 0 chr1 122201867 122201936 -74993496 - ID4 SINE ID -2 81 6 5 1517 221 225 0 112 chr1 122202190 122202203 -74993229 + B4 SINE B4 79 82 -210 5 1517 373 268 0 58 chr1 122202203 122202306 -74993126 + PB1D9 SINE Alu 2 98 -22 5 1517 2021 247 83 67 chr1 122202582 122203362 -74992070 - RLTR40 LTR ERVK -4 813 21 5 1517 24 32 0 0 chr1 122203406 122203437 -74991995 + AT_rich Low_complexity Low_complexity 1 31 0 5 1517 1698 248 47 80 chr1 122204472 122204838 -74990594 - RMER5 LTR ERV1 0 534 196 5 1517 779 222 30 145 chr1 122204838 122205244 -74990188 + RLTR15 LTR ERVK 1 359 0 5 1517 1698 248 47 80 chr1 122205244 122205429 -74990003 - RMER5 LTR ERV1 -339 195 1 5 1517 431 225 72 0 chr1 122205429 122205537 -74989895 - RMER5 LTR ERV1 -370 164 49 5 1517 592 341 37 19 chr1 122205624 122205893 -74989539 - RMER15 LTR ERVL 0 575 302 5 1517 3557 193 65 25 chr1 122206612 122207400 -74988032 + RMER1C Other Other 520 1338 -4 5 1517 919 299 46 11 chr1 122207618 122207902 -74987530 - MER21B LTR ERV1 -111 752 459 5 1517 25 31 0 0 chr1 122207928 122207960 -74987472 + AT_rich Low_complexity Low_complexity 1 32 0 5 1517 588 314 19 6 chr1 122208141 122208301 -74987131 - RSINE1 SINE B4 0 165 4 5 1517 563 162 152 9 chr1 122208322 122208434 -74986998 - B1_Mur2 SINE Alu 0 149 22 5 1517 487 258 30 72 chr1 122209303 122209470 -74985962 + B3A SINE B2 37 196 -2 5 1517 285 346 57 38 chr1 122209480 122209639 -74985793 + RMER5 LTR ERV1 137 298 -236 5 1517 552 256 146 0 chr1 122209640 122209777 -74985655 + B4A SINE B4 1 157 -135 5 1517 364 286 77 24 chr1 122209835 122210043 -74985389 + RMER5 LTR ERV1 296 514 -20 5 1517 824 238 92 18 chr1 122210153 122210380 -74985052 - MTE2a LTR MaLR 0 379 136 5 1517 553 222 7 80 chr1 122210776 122210913 -74984519 - MTE2a LTR MaLR -250 129 3 5 1517 789 289 119 8 chr1 122211333 122211584 -74983848 - B4A SINE B4 -7 285 7 5 1517 28 29 0 0 chr1 122211598 122211633 -74983799 + AT_rich Low_complexity Low_complexity 1 35 0 5 1517 532 212 63 171 chr1 122211646 122211868 -74983564 - B3A SINE B2 0 198 1 5 1517 219 267 79 13 chr1 122212054 122212130 -74983302 - ID4 SINE ID -1 82 2 6 1517 246 160 0 0 chr1 122212525 122212575 -74982857 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1517 980 285 9 39 chr1 122212815 122212874 -74982558 - B4A SINE B4 -32 260 202 6 1517 2554 83 3 9 chr1 122212874 122213203 -74982229 + ORR1A2 LTR MaLR 1 327 0 6 1517 980 273 4 34 chr1 122213203 122213411 -74982021 - B4A SINE B4 -90 202 1 6 1517 249 316 0 0 chr1 122213427 122213506 -74981926 + ORR1C2 LTR MaLR 43 121 -263 6 1517 286 282 44 88 chr1 122213634 122213770 -74981662 + RMER15 LTR ERVL 1 130 -445 6 1517 694 196 194 57 chr1 122213798 122214009 -74981423 + RMER15 LTR ERVL 336 575 0 6 1517 244 269 104 0 chr1 122214026 122214093 -74981339 + ORR1C2 LTR MaLR 273 346 -13 6 1517 473 231 42 113 chr1 122214338 122214568 -74980864 + MTEb LTR MaLR 111 351 -28 6 1517 1275 54 0 0 chr1 122214571 122214719 -74980713 - B1_Mus1 SINE Alu 0 148 1 6 1517 283 231 0 0 chr1 122214719 122214771 -74980661 + MTEb LTR MaLR 323 374 -5 6 1517 950 258 174 19 chr1 122214938 122215254 -74980178 - MTE2b LTR MaLR -10 369 5 6 1517 315 0 0 0 chr1 122215385 122215420 -74980012 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1517 379 250 106 0 chr1 122215461 122215565 -74979867 - B3A SINE B2 -80 118 4 6 1517 513 227 63 9 chr1 122215615 122215726 -74979706 - B3A SINE B2 -41 157 41 6 1517 323 201 31 17 chr1 122215741 122215806 -74979626 + B1_Mus2 SINE Alu 2 59 -88 6 1517 567 134 0 0 chr1 122215806 122215925 -74979507 + (CAGG)n Simple_repeat Simple_repeat 4 122 0 6 1517 490 149 115 21 chr1 122215925 122216021 -74979411 + B1_Mur2 SINE Alu 40 144 -5 6 1517 249 154 0 0 chr1 122216032 122216071 -74979361 - B3A SINE B2 -159 39 1 6 1517 276 330 52 0 chr1 122216214 122216311 -74979121 + B4 SINE B4 1 102 -190 6 1517 524 85 28 63 chr1 122216313 122216580 -74978852 + (GTGTG)n Simple_repeat Simple_repeat 1 257 0 6 1517 603 52 44 60 chr1 122216639 122216822 -74978610 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 6 1517 727 316 5 20 chr1 122216854 122217054 -74978378 + B4 SINE B4 91 287 -5 6 1517 542 212 17 96 chr1 122217302 122217479 -74977953 - RSINE1 SINE B4 -1 164 2 6 1517 641 242 41 82 chr1 122219099 122219329 -74976103 + ZP3AR Satellite Satellite 1 220 0 6 1517 220 359 19 0 chr1 122219290 122219382 -74976050 + ID2 SINE ID 2 99 -53 6 1517 228 293 17 0 chr1 122219411 122219469 -74975963 - ID4_ SINE ID -23 60 2 6 1517 367 195 39 13 chr1 122220168 122220246 -74975186 + B4 SINE B4 1 80 -212 6 1517 297 191 0 0 chr1 122220305 122220352 -74975080 + B4 SINE B4 223 269 -23 6 1517 783 66 0 0 chr1 122220352 122220458 -74974974 + (CA)n Simple_repeat Simple_repeat 2 107 0 6 1517 662 240 25 31 chr1 122220720 122220879 -74974553 - ID_B1 SINE B4 -65 159 2 6 1517 603 206 0 0 chr1 122221307 122221482 -74973950 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1517 249 232 0 0 chr1 122221501 122221596 -74973836 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1517 281 300 0 0 chr1 122221764 122221824 -74973608 + RSINE1 SINE B4 6 65 -100 6 1517 359 65 0 0 chr1 122221873 122221919 -74973513 - HAL1-3A_ME LINE L1 -837 2021 1976 6 1517 189 0 0 0 chr1 122221940 122221961 -74973471 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1517 504 0 0 0 chr1 122222004 122222060 -74973372 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1517 252 0 0 0 chr1 122222126 122222154 -74973278 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1517 470 17 17 0 chr1 122222395 122222454 -74972978 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 6 1517 630 236 16 0 chr1 122222457 122222584 -74972848 - ID_B1 SINE B4 -6 218 90 6 1517 401 242 44 0 chr1 122222596 122222687 -74972745 + RSINE1 SINE B4 26 120 -45 6 1517 651 221 29 0 chr1 122222735 122222875 -74972557 + B4 SINE B4 82 225 -67 6 1517 376 309 18 18 chr1 122222892 122223004 -74972428 + MIRb SINE MIR 78 189 -79 6 1517 306 125 0 0 chr1 122223007 122223055 -74972377 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1517 334 283 73 24 chr1 122223505 122223628 -74971804 - RSINE1 SINE B4 0 165 37 6 1517 885 107 0 0 chr1 122223722 122223853 -74971579 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 6 1517 1212 113 34 0 chr1 122223866 122224043 -74971389 - B2_Mm2 SINE B2 -10 185 3 6 1517 609 52 0 0 chr1 122224048 122224125 -74971307 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 6 1517 807 127 8 31 chr1 122224162 122224292 -74971140 - B1_Mus2 SINE Alu 0 147 21 6 1517 285 29 0 0 chr1 122224754 122224788 -74970644 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1517 272 262 0 48 chr1 122224843 122224927 -74970505 + MLT2C1 LTR ERVL 466 545 -18 6 1517 923 219 44 15 chr1 122225118 122225322 -74970110 - B3 SINE B2 -2 214 5 6 1517 260 283 21 21 chr1 122225437 122225531 -74969901 - Charlie4 DNA MER1_type -34 1927 1834 6 1517 656 286 23 28 chr1 122225556 122225772 -74969660 - ID_B1 SINE B4 -8 216 2 6 1517 851 142 43 36 chr1 122225796 122225935 -74969497 + B1_Mur4 SINE Alu 2 141 -9 6 1517 630 49 0 0 chr1 122225935 122226017 -74969415 + (CAAAC)n Simple_repeat Simple_repeat 2 83 0 6 1517 593 259 133 0 chr1 122226199 122226342 -74969090 - RSINE1 SINE B4 -1 164 3 6 1517 876 172 19 6 chr1 122226727 122226885 -74968547 + MTC LTR MaLR 1 160 -261 6 1517 859 304 26 35 chr1 122227020 122227040 -74968392 - RMER5 LTR ERV1 -16 518 500 6 1517 243 0 0 0 chr1 122227040 122227067 -74968365 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1517 312 27 0 0 chr1 122227067 122227103 -74968329 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1517 859 304 26 35 chr1 122227103 122227378 -74968054 - RMER5 LTR ERV1 -35 499 226 6 1517 1819 222 68 8 chr1 122227378 122227760 -74967672 + MTD LTR MaLR 1 405 -14 6 1517 25 31 0 0 chr1 122227861 122227893 -74967539 + AT_rich Low_complexity Low_complexity 1 32 0 6 1517 410 221 0 0 chr1 122227897 122227974 -74967458 - RMER5 LTR ERV1 -421 113 37 6 1517 513 215 127 68 chr1 122227995 122228200 -74967232 - B4 SINE B4 -69 223 7 6 1517 909 230 382 28 chr1 122228916 122229196 -74966236 + MTE2a LTR MaLR 1 379 0 6 1517 600 295 189 12 chr1 122230650 122230894 -74964538 + B4A SINE B4 4 290 -2 6 1517 200 224 41 0 chr1 122230944 122230993 -74964439 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1517 819 289 76 18 chr1 122231352 122231627 -74963805 - B4 SINE B4 0 292 2 6 1517 456 111 0 0 chr1 122231649 122231721 -74963711 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1517 437 150 18 0 chr1 122231734 122231847 -74963585 + (CAGA)n Simple_repeat Simple_repeat 2 116 0 6 1517 684 93 0 0 chr1 122232001 122232098 -74963334 + (TTTC)n Simple_repeat Simple_repeat 1 97 0 6 1517 364 291 61 47 chr1 122232107 122232122 -74963310 - HAL1-3A_ME LINE L1 -421 2437 2424 6 1517 1229 89 0 11 chr1 122232122 122232304 -74963128 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1517 364 291 61 47 chr1 122232304 122232436 -74962996 - HAL1-3A_ME LINE L1 -435 2423 2288 6 1517 305 330 17 9 chr1 122232438 122232554 -74962878 + CT-rich Low_complexity Low_complexity 1 117 0 6 1517 206 146 20 59 chr1 122232649 122232700 -74962732 + CT-rich Low_complexity Low_complexity 1 49 0 6 1517 375 41 0 0 chr1 122233206 122233255 -74962177 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1517 328 235 12 36 chr1 122233255 122233339 -74962093 - B4 SINE B4 -23 269 188 6 1517 218 315 0 40 chr1 122233497 122233573 -74961859 + CT-rich Low_complexity Low_complexity 6 78 0 6 1517 22 35 0 0 chr1 122233574 122233603 -74961829 + AT_rich Low_complexity Low_complexity 1 29 0 6 1517 2035 136 27 9 chr1 122233608 122233942 -74961490 - Lx3B LINE L1 -7 6966 6627 6 1517 1100 89 0 22 chr1 122233950 122234134 -74961298 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1517 213 39 0 0 chr1 122236012 122236038 -74959394 + (GGA)n Simple_repeat Simple_repeat 2 27 0 6 1517 684 222 30 33 chr1 122236070 122236260 -74959172 + B3 SINE B2 7 192 -3 6 1517 197 132 0 26 chr1 122236355 122236394 -74959038 + CT-rich Low_complexity Low_complexity 3 40 0 6 1517 1055 128 0 0 chr1 122236394 122236542 -74958890 - B1_Mus1 SINE Alu 0 148 1 6 1517 437 201 31 31 chr1 122240590 122240701 -74954731 - PB1D7 SINE Alu -6 114 1 6 1517 597 271 45 0 chr1 122240751 122240884 -74954548 + RSINE1 SINE B4 11 149 -16 6 1517 546 29 0 0 chr1 122240894 122240962 -74954470 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1517 603 305 224 17 chr1 122242413 122242650 -74952782 + B4 SINE B4 1 286 -6 6 1517 365 254 32 11 chr1 122243819 122243923 -74951509 - PB1D10 SINE Alu -4 123 9 6 1517 609 226 20 33 chr1 122243928 122244106 -74951326 - ID_B1 SINE B4 -45 247 77 6 1517 300 173 101 90 chr1 122244133 122244215 -74951217 + PB1D10 SINE Alu 17 99 -18 6 1517 739 260 154 3 chr1 122244215 122244512 -74950920 - MTE2b LTR MaLR 0 379 38 6 1517 209 229 21 0 chr1 122244516 122244564 -74950868 - MIRc SINE MIR -113 155 107 6 1517 903 296 52 45 chr1 122244663 122244950 -74950482 + B4 SINE B4 2 290 -2 6 1517 184 229 146 0 chr1 122245153 122245201 -74950231 + L2a LINE L2 3050 3104 -322 6 1517 2601 80 0 0 chr1 122245202 122245529 -74949903 - ORR1A2 LTR MaLR 0 327 1 6 1517 203 350 17 0 chr1 122245757 122245817 -74949615 + L2a LINE L2 3366 3426 0 6 1517 209 250 13 0 chr1 122245817 122245893 -74949539 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 6 1517 344 22 0 22 chr1 122245947 122245993 -74949439 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1517 269 231 250 0 chr1 122245993 122246097 -74949335 - B1F2 SINE Alu -17 132 3 6 1517 263 271 59 0 chr1 122246111 122246196 -74949236 - PB1D7 SINE Alu -8 112 23 6 1517 221 339 0 0 chr1 122246813 122246878 -74948554 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1517 437 270 103 45 chr1 122246997 122247152 -74948280 - B4 SINE B4 -3 289 126 6 1517 795 182 13 20 chr1 122247184 122247335 -74948097 - B1_Mur4 SINE Alu 0 150 1 6 1517 248 225 0 0 chr1 122247339 122247391 -74948041 - B4 SINE B4 -153 139 88 6 1517 472 308 56 0 chr1 122247385 122247528 -74947904 - B4A SINE B4 -17 275 125 6 1517 306 267 79 0 chr1 122247556 122247657 -74947775 - PB1D10 SINE Alu -8 109 1 6 1517 243 314 62 31 chr1 122248345 122248473 -74946959 - MIRm SINE MIR -142 134 3 6 1517 605 220 147 14 chr1 122248655 122248798 -74946634 - RSINE1 SINE B4 0 165 4 6 1517 269 286 65 0 chr1 122248809 122248886 -74946546 - B4 SINE B4 -207 85 4 6 1517 1074 256 6 109 chr1 122249009 122249320 -74946112 + B4 SINE B4 1 279 -13 7 1517 232 315 96 24 chr1 122249397 122249563 -74945869 + MIRc SINE MIR 22 204 -64 7 1517 574 266 53 53 chr1 122249819 122249990 -74945442 + MTD LTR MaLR 1 171 -248 7 1517 2476 139 45 5 chr1 122249994 122250391 -74945041 + MTC LTR MaLR 1 413 -8 7 1517 542 254 186 23 chr1 122250408 122250585 -74944847 + MTD LTR MaLR 159 364 -15 7 1517 573 233 26 40 chr1 122250709 122250867 -74944565 - ORR1E LTR MaLR -203 171 13 7 1517 664 226 159 46 chr1 122251535 122251691 -74943741 + ID_B1 SINE B4 2 179 -45 7 1517 2576 166 19 2 chr1 122251691 122252101 -74943331 + MTC LTR MaLR 5 421 0 7 1517 664 226 159 46 chr1 122252101 122252139 -74943293 + ID_B1 SINE B4 180 218 -6 7 1517 399 360 0 0 chr1 122252230 122252408 -74943024 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 1517 247 279 114 23 chr1 122252489 122252577 -74942855 - PB1D7 SINE Alu -6 114 19 7 1517 510 325 12 12 chr1 122252517 122252679 -74942753 - B4A SINE B4 -130 162 1 7 1517 1453 138 32 0 chr1 122252745 122252963 -74942469 - URR1A DNA MER1_type 0 226 2 7 1517 1032 245 41 45 chr1 122252965 122253234 -74942198 + B4A SINE B4 19 286 -6 7 1517 306 0 0 0 chr1 122253237 122253271 -74942161 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1517 315 170 75 0 chr1 122253316 122253369 -74942063 - ID_B1 SINE B4 -8 216 160 7 1517 369 239 0 0 chr1 122253514 122253581 -74941851 - ID4 SINE ID -13 70 4 7 1517 220 323 29 48 chr1 122253583 122253687 -74941745 - MIRm SINE MIR -129 147 46 7 1517 273 280 26 26 chr1 122255004 122255081 -74940351 - B4A SINE B4 0 292 216 7 1517 663 161 0 0 chr1 122255087 122255205 -74940227 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1517 280 264 11 42 chr1 122255220 122255315 -74940117 + RMER12 LTR ERVK 750 841 -481 7 1517 210 281 0 0 chr1 122255325 122255382 -74940050 - MIRc SINE MIR -84 184 128 7 1517 418 288 152 0 chr1 122255390 122255567 -74939865 + ID_B1 SINE B4 2 205 -19 7 1517 265 250 108 27 chr1 122255897 122256008 -74939424 - ORR1E LTR MaLR -221 138 19 7 1517 930 223 8 31 chr1 122256132 122256348 -74939084 - B3A SINE B2 -5 211 3 7 1517 3450 209 82 91 chr1 122256354 122256643 -74938789 - RCHARR1 DNA MER1_type 0 974 685 7 1517 1115 230 76 45 chr1 122256643 122256942 -74938490 - ORR1D2 LTR MaLR 0 370 50 7 1517 257 0 30 0 chr1 122256942 122256975 -74938457 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1517 1161 58 0 0 chr1 122256975 122257112 -74938320 - B1_Mm SINE Alu -10 137 1 7 1517 1115 230 76 45 chr1 122257112 122257166 -74938266 - ORR1D2 LTR MaLR -321 49 6 7 1517 3450 209 82 91 chr1 122257166 122257392 -74938040 - RCHARR1 DNA MER1_type -290 684 483 7 1517 373 283 23 86 chr1 122257392 122257448 -74937984 - RSINE1 SINE B4 0 165 117 7 1517 1608 43 0 0 chr1 122257448 122257634 -74937798 - B2_Mm1a SINE B2 -6 187 2 7 1517 373 283 23 86 chr1 122257634 122257751 -74937681 - RSINE1 SINE B4 -49 116 3 7 1517 3450 209 82 91 chr1 122257751 122257766 -74937666 - RCHARR1 DNA MER1_type -492 482 482 7 1517 633 27 0 0 chr1 122257766 122257841 -74937591 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 7 1517 3450 209 82 91 chr1 122257841 122258290 -74937142 - RCHARR1 DNA MER1_type -492 482 1 7 1517 312 250 66 0 chr1 122258790 122258866 -74936566 - ID4_ SINE ID -1 82 2 7 1517 605 186 314 0 chr1 122258911 122259083 -74936349 + URR1A DNA MER1_type 1 226 0 7 1517 426 200 108 154 chr1 122259111 122259306 -74936126 + B2_Mm2 SINE B2 1 186 -9 7 1517 349 219 0 40 chr1 122259724 122259800 -74935632 + B4A SINE B4 1 73 -219 7 1517 423 0 0 0 chr1 122259917 122259964 -74935468 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1517 527 279 87 6 chr1 122260406 122260579 -74934853 + MLT1D LTR MaLR 12 198 -307 7 1517 632 197 72 7 chr1 122260848 122260986 -74934446 - MTD LTR MaLR 0 419 273 7 1517 671 246 23 46 chr1 122261453 122261540 -74933892 - B4A SINE B4 0 292 209 7 1517 1478 212 109 18 chr1 122261540 122261924 -74933508 + MTD LTR MaLR 1 419 0 7 1517 671 249 40 32 chr1 122261924 122262047 -74933385 - B4A SINE B4 -84 208 1 7 1517 402 292 196 20 chr1 122262829 122263028 -74932404 - RMER15 LTR ERVL -6 569 336 7 1517 365 179 14 29 chr1 122263227 122263296 -74932136 - ID4 SINE ID -11 72 5 7 1517 267 260 0 13 chr1 122263301 122263379 -74932053 - B1F SINE Alu 0 149 73 7 1517 1013 259 9 38 chr1 122263436 122263649 -74931783 + ID_B1 SINE B4 2 208 -16 7 1517 699 284 248 21 chr1 122263727 122264054 -74931378 - MTD LTR MaLR -14 405 5 7 1517 264 238 123 31 chr1 122264099 122264229 -74931203 + RMER17D LTR ERVK 403 544 -345 7 1517 304 313 101 30 chr1 122264166 122264334 -74931098 + MLT1D LTR MaLR 207 386 -4 7 1517 189 246 0 0 chr1 122264537 122264602 -74930830 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1517 581 309 103 20 chr1 122264603 122264798 -74930634 - B4A SINE B4 0 292 82 7 1517 863 196 18 31 chr1 122264819 122265030 -74930402 - B3A SINE B2 -2 214 2 7 1517 1021 240 150 55 chr1 122265088 122265449 -74929983 - MTB_Mm LTR MaLR -12 395 1 7 1517 216 0 0 0 chr1 122265465 122265489 -74929943 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 7 1517 182 333 94 31 chr1 122266488 122266584 -74928848 + MIRc SINE MIR 44 145 -123 7 1517 431 257 190 27 chr1 122266656 122266840 -74928592 - B4 SINE B4 -77 215 2 7 1517 579 311 12 0 chr1 122266890 122267051 -74928381 + RSINE1 SINE B4 3 165 0 7 1517 23 33 0 0 chr1 122267051 122267081 -74928351 + AT_rich Low_complexity Low_complexity 1 30 0 7 1517 629 167 27 0 chr1 122267245 122267395 -74928037 + (TCTA)n Simple_repeat Simple_repeat 2 155 0 7 1517 200 357 132 26 chr1 122267602 122267792 -74927640 + MIRb SINE MIR 57 266 -2 7 1517 943 264 25 49 chr1 122269335 122269664 -74925768 + MTE2a LTR MaLR 2 308 -71 7 1517 207 0 0 0 chr1 122269865 122269888 -74925544 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1517 824 286 56 39 chr1 122269901 122270185 -74925247 - B4 SINE B4 -2 290 2 7 1517 196 322 36 24 chr1 122271229 122271355 -74924077 - MIRm SINE MIR -76 200 68 7 1517 273 254 34 76 chr1 122271914 122272033 -74923399 + RLTR23 LTR ERV1 262 375 -55 7 1517 277 167 27 14 chr1 122272596 122272669 -74922763 + CT-rich Low_complexity Low_complexity 3 76 0 7 1517 1313 60 6 0 chr1 122272673 122272841 -74922591 - B2_Mm2 SINE B2 -17 178 10 7 1517 7186 65 7 3 chr1 122272841 122273816 -74921616 + L1Md_F2 LINE L1 4608 5586 -297 7 1517 7670 63 5 10 chr1 122273817 122274812 -74920620 + L1Md_F2 LINE L1 5588 6577 -5 7 1517 206 0 0 152 chr1 122274815 122274861 -74920571 + A-rich Low_complexity Low_complexity 4 42 0 7 1517 3131 70 67 11 chr1 122275146 122275596 -74919836 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1517 322 253 0 44 chr1 122276568 122276659 -74918773 - RMER30 DNA MER1_type -27 175 89 7 1517 755 118 0 7 chr1 122276982 122277118 -74918314 + (CA)n Simple_repeat Simple_repeat 2 136 0 7 1517 749 93 31 0 chr1 122277835 122277964 -74917468 + (GGA)n Simple_repeat Simple_repeat 2 134 0 7 1517 198 103 0 0 chr1 122277970 122277999 -74917433 + (ATG)n Simple_repeat Simple_repeat 1 29 0 7 1517 1883 196 48 43 chr1 122278133 122278549 -74916883 - MTD LTR MaLR 0 419 2 7 1517 458 192 13 0 chr1 122278550 122278628 -74916804 + B4 SINE B4 147 225 -67 7 1517 393 86 0 0 chr1 122278633 122278691 -74916741 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1517 382 277 51 51 chr1 122278770 122278945 -74916487 + Lx8 LINE L1 7229 7403 -70 7 1517 421 248 0 11 chr1 122279043 122279410 -74916022 + (TG)n Simple_repeat Simple_repeat 1 362 0 7 1517 390 315 39 17 chr1 122279568 122279749 -74915683 - Charlie5 DNA MER1_type -72 2552 2368 7 1517 382 127 0 0 chr1 122279854 122279909 -74915523 - URR1B DNA MER1_type -3 222 168 7 1517 183 190 0 0 chr1 122280669 122280727 -74914705 + (CCA)n Simple_repeat Simple_repeat 2 59 0 7 1517 485 238 30 38 chr1 122280761 122280897 -74914535 - B1_Mur2 SINE Alu 0 150 5 7 1517 343 307 16 66 chr1 122281151 122281273 -74914159 - PB1D10 SINE Alu -1 116 1 7 1517 752 253 56 0 chr1 122281273 122281344 -74914088 - ID SINE ID -140 84 4 7 1517 313 332 86 18 chr1 122281363 122281490 -74913942 - B1F SINE Alu -2 125 1 7 1517 932 257 0 24 chr1 122282537 122282744 -74912688 + ID_B1 SINE B4 23 224 0 7 1517 206 250 41 14 chr1 122282753 122282826 -74912606 + (TATG)n Simple_repeat Simple_repeat 3 77 0 7 1517 611 308 98 28 chr1 122282839 122283093 -74912339 - B4A SINE B4 -19 273 2 7 1517 243 313 36 0 chr1 122283094 122283177 -74912255 - MamRep137 DNA TcMar? -173 271 186 7 1517 488 228 0 38 chr1 122283357 122283462 -74911970 - RSINE1 SINE B4 -61 104 4 7 1517 239 323 47 39 chr1 122283531 122283660 -74911772 + MIRb SINE MIR 77 206 -62 7 1517 797 254 5 48 chr1 122284224 122284410 -74911022 - B3A SINE B2 -19 179 2 7 1517 248 161 0 16 chr1 122284410 122284473 -74910959 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1517 762 206 120 11 chr1 122284482 122284673 -74910759 - B3 SINE B2 0 216 5 7 1517 2327 112 12 0 chr1 122285114 122285435 -74909997 - ORR1A2 LTR MaLR -2 325 1 7 1517 184 222 14 149 chr1 122285912 122285986 -74909446 - MIRm SINE MIR -88 188 125 7 1517 221 278 0 0 chr1 122286953 122287007 -74908425 + C-rich Low_complexity Low_complexity 1 54 0 7 1517 913 282 52 31 chr1 122287555 122287841 -74907591 + B4 SINE B4 1 292 0 7 1517 4149 159 97 72 chr1 122288321 122289201 -74906231 + RMER19B LTR ERVK 1 902 0 7 1517 197 333 0 0 chr1 122289679 122289739 -74905693 - MIRc SINE MIR -143 125 66 7 1518 707 268 20 30 chr1 122290316 122290516 -74904916 + B3A SINE B2 1 198 0 7 1518 1530 234 151 38 chr1 122290896 122291372 -74904060 + RLTR20B3 LTR ERVK 21 550 -27 7 1518 2036 284 49 3 chr1 122291423 122292031 -74903401 - Lx8 LINE L1 -351 7122 6487 7 1518 1146 240 132 37 chr1 122292200 122292655 -74902777 + MT2A LTR ERVL 1 498 -35 8 1518 299 250 0 0 chr1 122292672 122292752 -74902680 + MLT2B5 LTR ERVL 476 555 0 8 1518 351 219 134 62 chr1 122293946 122294058 -74901374 - PB1D7 SINE Alu 0 120 1 8 1518 766 300 44 15 chr1 122294243 122294517 -74900915 + B4 SINE B4 2 283 -9 8 1518 305 315 115 14 chr1 122295596 122295744 -74899688 + RSINE1 SINE B4 3 165 0 8 1518 189 355 80 22 chr1 122295899 122296037 -74899395 + MIRb SINE MIR 22 167 -101 8 1518 944 211 92 29 chr1 122296078 122296351 -74899081 + B4 SINE B4 3 292 0 8 1518 727 229 82 39 chr1 122296486 122296668 -74898764 - ID_B1 SINE B4 -34 190 1 8 1518 776 165 7 35 chr1 122297053 122297197 -74898235 - B1_Mur1 SINE Alu -1 148 9 8 1518 556 333 60 53 chr1 122297245 122297530 -74897902 - B4A SINE B4 0 292 6 8 1518 531 170 0 0 chr1 122297668 122297768 -74897664 + CT-rich Low_complexity Low_complexity 3 102 0 8 1518 355 309 27 61 chr1 122297920 122298068 -74897364 - MER5B DNA MER1_type -2 176 34 8 1518 995 227 69 5 chr1 122298474 122298691 -74896741 + B4 SINE B4 1 231 -61 8 1518 660 281 14 0 chr1 122298685 122298831 -74896601 + B3A SINE B2 10 157 -41 8 1518 351 0 0 0 chr1 122298845 122298884 -74896548 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1518 246 174 0 0 chr1 122298884 122298930 -74896502 + GA-rich Low_complexity Low_complexity 1 46 0 8 1518 697 279 19 0 chr1 122298964 122299118 -74896314 - B4 SINE B4 -135 157 1 8 1518 464 348 63 68 chr1 122300114 122300496 -74894936 - RLTR26 LTR ERVK -166 476 97 8 1518 180 0 0 0 chr1 122301437 122301457 -74893975 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1518 1219 228 84 87 chr1 122301599 122301979 -74893453 + MTE2a LTR MaLR 1 379 0 8 1518 250 301 201 22 chr1 122302077 122302216 -74893216 + MIRb SINE MIR 1 164 -104 8 1518 996 297 87 0 chr1 122302224 122302571 -74892861 - MTE2b LTR MaLR -1 378 2 8 1518 384 22 0 0 chr1 122302635 122302680 -74892752 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1518 449 305 79 24 chr1 122302696 122302896 -74892536 - MIRb SINE MIR -50 218 6 8 1518 1096 233 143 23 chr1 122302980 122303287 -74892145 - MTE2b LTR MaLR -34 345 2 8 1518 741 274 17 6 chr1 122303856 122304036 -74891396 - B3A SINE B2 -16 182 1 8 1518 574 242 162 35 chr1 122304204 122304401 -74891031 - B4A SINE B4 -61 231 10 8 1518 230 0 33 0 chr1 122304487 122304517 -74890915 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1518 252 0 0 0 chr1 122304724 122304752 -74890680 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1518 669 276 33 51 chr1 122304955 122305169 -74890263 + ID_B1 SINE B4 4 213 -11 8 1518 231 149 20 41 chr1 122305195 122305244 -74890188 - MLT2D LTR ERVL 0 560 513 8 1518 1684 187 103 20 chr1 122305278 122305628 -74889804 + MTC LTR MaLR 40 418 -3 8 1518 304 113 0 0 chr1 122305654 122305716 -74889716 - L1Md_F3 LINE L1 -3 6581 6520 8 1518 585 315 77 107 chr1 122305825 122305982 -74889450 - MT2A LTR ERVL -139 394 243 8 1518 339 85 0 0 chr1 122305982 122306029 -74889403 + (CAT)n Simple_repeat Simple_repeat 3 49 0 8 1518 585 315 77 107 chr1 122306029 122306273 -74889159 - MT2A LTR ERVL -291 242 5 8 1518 207 0 0 0 chr1 122306353 122306376 -74889056 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 8 1518 22 0 0 0 chr1 122306386 122306408 -74889024 + AT_rich Low_complexity Low_complexity 1 22 0 8 1518 571 295 203 47 chr1 122306409 122306729 -74888703 - MTE-int LTR MaLR -55 1525 1156 8 1518 9318 220 66 29 chr1 122306944 122309202 -74886230 - MERVL_2A-int LTR ERVL -369 5392 3051 8 1518 345 18 70 0 chr1 122309213 122309270 -74886162 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 8 1518 1207 61 0 20 chr1 122309270 122309421 -74886011 - B1_Mus1 SINE Alu 0 148 1 8 1518 489 148 0 12 chr1 122309421 122309503 -74885929 - MERVL_2A-int LTR ERVL -2697 3064 2984 8 1518 588 200 7 51 chr1 122309504 122309635 -74885797 + MTD LTR MaLR 40 171 -250 8 1518 444 290 40 10 chr1 122309636 122309737 -74885695 + B3A SINE B2 42 145 -53 8 1518 324 70 0 0 chr1 122309753 122309796 -74885636 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1518 29 28 0 0 chr1 122309797 122309833 -74885599 + AT_rich Low_complexity Low_complexity 1 36 0 8 1518 713 236 81 31 chr1 122309899 122310122 -74885310 + B4A SINE B4 43 276 -16 8 1518 239 273 90 68 chr1 122310161 122310338 -74885094 - RLTR21 LTR ERVK -318 1254 1074 8 1518 254 258 29 97 chr1 122310352 122310455 -74884977 - MLT1A1 LTR MaLR -55 353 215 8 1518 790 235 38 170 chr1 122311397 122311715 -74883717 + B4 SINE B4 1 276 -16 8 1518 347 89 0 18 chr1 122312903 122312960 -74882472 + (TATG)n Simple_repeat Simple_repeat 4 59 0 8 1518 207 340 10 0 chr1 122313060 122313157 -74882275 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 8 1518 210 220 0 0 chr1 122313164 122313223 -74882209 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 8 1518 469 299 17 43 chr1 122313269 122313416 -74882016 - B1F SINE Alu -8 139 1 8 1518 2129 164 63 24 chr1 122313500 122313898 -74881534 + RMER10A LTR ERVL 1 417 -25 8 1518 480 35 0 0 chr1 122313898 122313956 -74881476 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 8 1518 2129 164 63 24 chr1 122313956 122313982 -74881450 + RMER10A LTR ERVL 418 442 0 8 1518 969 76 0 0 chr1 122314010 122314141 -74881291 + (TTCCC)n Simple_repeat Simple_repeat 1 131 0 8 1518 393 310 62 96 chr1 122314381 122314752 -74880680 + ORR1E LTR MaLR 1 359 0 8 1518 964 276 5 5 chr1 122315058 122315276 -74880156 + ID_B1 SINE B4 1 218 -6 8 1518 979 286 57 50 chr1 122315316 122315596 -74879836 + B4 SINE B4 6 287 -5 8 1518 310 264 57 175 chr1 122315817 122316055 -74879377 + B4 SINE B4 12 219 -73 8 1518 383 226 60 113 chr1 122315911 122316061 -74879371 + B1_Mur2 SINE Alu 6 147 -2 8 1518 315 0 0 0 chr1 122316068 122316103 -74879329 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1518 240 143 0 0 chr1 122316109 122316151 -74879281 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 8 1518 396 0 0 0 chr1 122316221 122316265 -74879167 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1518 1892 191 33 11 chr1 122316586 122316951 -74878481 - ORR1D1 LTR MaLR -1 373 1 8 1518 348 216 84 31 chr1 122317009 122317111 -74878321 - MTEb LTR MaLR -83 296 203 8 1518 218 268 86 76 chr1 122317322 122317427 -74878005 - MER5B DNA MER1_type -14 164 59 8 1518 201 147 0 0 chr1 122317448 122317482 -74877950 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1518 474 308 19 19 chr1 122317589 122317751 -74877681 - RSINE1 SINE B4 -1 164 3 8 1518 467 286 36 103 chr1 122318797 122318992 -74876440 - B4A SINE B4 0 292 111 8 1518 290 196 164 29 chr1 122319130 122319271 -74876161 - MIRb SINE MIR -119 149 3 8 1518 201 208 20 20 chr1 122320092 122320141 -74875291 + (TATG)n Simple_repeat Simple_repeat 4 52 0 8 1518 851 273 22 22 chr1 122320160 122320385 -74875047 - B4A SINE B4 -10 282 58 8 1518 526 307 120 9 chr1 122320570 122320803 -74874629 + RMER15 LTR ERVL 303 561 -14 8 1518 764 265 52 11 chr1 122321860 122322051 -74873381 + ID_B1 SINE B4 1 199 -25 8 1518 285 305 66 37 chr1 122321940 122322076 -74873356 + B1_Mur4 SINE Alu 11 150 0 8 1518 476 273 133 57 chr1 122322302 122322512 -74872920 + RMER15 LTR ERVL 336 561 -14 8 1518 288 0 0 0 chr1 122322716 122322748 -74872684 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1518 207 0 0 0 chr1 122322748 122322770 -74872662 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1518 403 270 272 86 chr1 122322801 122323044 -74872388 - B4A SINE B4 -2 290 3 8 1518 701 168 76 0 chr1 122323136 122323267 -74872165 + B1_Mur4 SINE Alu 10 150 0 8 1518 345 302 7 44 chr1 122323486 122323621 -74871811 + CT-rich Low_complexity Low_complexity 4 133 0 8 1518 952 222 38 19 chr1 122324821 122325032 -74870400 + B3 SINE B2 2 216 0 8 1518 2401 128 50 13 chr1 122325052 122325432 -74870000 - ORR1B1 LTR MaLR 0 394 1 8 1518 2093 175 34 13 chr1 122325461 122325843 -74869589 - RMER19B LTR ERVK -173 729 340 8 1518 446 322 35 57 chr1 122325939 122326255 -74869177 + L1MC4 LINE L1 6902 7210 -832 8 1518 270 245 75 87 chr1 122326348 122326509 -74868923 - Tigger7 DNA MER2_type -42 2449 2293 8 1518 261 225 113 0 chr1 122326537 122326608 -74868824 - PB1D10 SINE Alu -6 111 33 8 1518 417 271 208 0 chr1 122326553 122326697 -74868735 - ID_B1 SINE B4 -48 176 3 8 1518 1127 338 5 36 chr1 122326764 122327157 -74868275 - Tigger7 DNA MER2_type -2085 406 26 8 1518 468 0 0 0 chr1 122327290 122327342 -74868090 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1518 249 167 0 0 chr1 122327345 122327387 -74868045 + B4A SINE B4 208 249 -43 8 1518 241 146 146 0 chr1 122327454 122327509 -74867923 + L1MC4 LINE L1 7832 7894 -148 8 1518 533 300 143 20 chr1 122327858 122328110 -74867322 + B4A SINE B4 4 286 -6 8 1518 315 0 0 0 chr1 122328208 122328243 -74867189 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1518 714 229 14 0 chr1 122329038 122329178 -74866254 - B1_Mur1 SINE Alu -6 143 2 8 1518 909 219 10 38 chr1 122329341 122329550 -74865882 + B4 SINE B4 21 223 -69 8 1518 261 118 0 0 chr1 122329557 122329608 -74865824 + (A)n Simple_repeat Simple_repeat 1 51 0 8 1518 303 93 0 0 chr1 122329717 122329760 -74865672 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1518 660 209 0 17 chr1 122329776 122329951 -74865481 + (CA)n Simple_repeat Simple_repeat 2 173 0 8 1518 353 206 214 10 chr1 122330140 122330238 -74865194 + PB1 SINE Alu 3 120 -7 8 1518 1041 207 21 2 chr1 122330313 122330528 -74864904 - MTD LTR MaLR -1 418 169 8 1518 749 301 97 95 chr1 122330531 122331101 -74864331 - RMER20B LTR ERVK -25 602 1 9 1518 770 254 130 14 chr1 122331101 122331270 -74864162 - MTD LTR MaLR -224 195 2 8 1518 225 36 0 0 chr1 122331426 122331454 -74863978 + ID_B1 SINE B4 185 212 -12 9 1518 183 271 33 76 chr1 122332376 122332468 -74862964 - L2a LINE L2 -71 3355 3268 9 1518 679 302 124 70 chr1 122332730 122333086 -74862346 - MTE2a LTR MaLR -4 375 1 9 1518 192 314 233 21 chr1 122333102 122333437 -74861995 - L2a LINE L2 -553 2866 2461 9 1518 190 348 62 72 chr1 122333642 122333918 -74861514 - L2b LINE L2 -191 3184 2912 9 1518 250 316 76 33 chr1 122333904 122334055 -74861377 - MIRb SINE MIR -70 206 42 9 1518 263 281 49 62 chr1 122334075 122334219 -74861213 - MLT2D LTR ERVL -83 331 190 9 1518 268 186 69 69 chr1 122335092 122335236 -74860196 + GA-rich Low_complexity Low_complexity 4 147 0 9 1518 261 286 31 149 chr1 122335301 122335521 -74859911 - RMER17C LTR ERVK -59 351 161 9 1518 483 18 0 0 chr1 122335521 122335577 -74859855 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 1518 261 286 31 149 chr1 122335577 122335611 -74859821 - RMER17C LTR ERVK -250 160 128 9 1518 324 286 181 5 chr1 122335796 122336017 -74859415 + RMER15 LTR ERVL 316 575 0 9 1518 452 226 0 115 chr1 122336208 122336231 -74859201 + PB1D7 SINE Alu 6 24 -96 9 1518 1533 180 245 3 chr1 122336231 122336566 -74858866 + MTC LTR MaLR 5 420 -1 9 1518 452 226 0 115 chr1 122336566 122336672 -74858760 + PB1D7 SINE Alu 25 120 0 9 1518 2533 158 81 10 chr1 122336847 122336890 -74858542 - RLTR20B1 LTR ERVK -48 515 472 9 1518 369 0 0 0 chr1 122336890 122336931 -74858501 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1518 2533 158 81 10 chr1 122336931 122337368 -74858064 - RLTR20B1 LTR ERVK -92 471 2 9 1518 899 262 14 10 chr1 122337896 122338104 -74857328 - B3 SINE B2 -7 209 1 9 1518 971 173 13 114 chr1 122338648 122338876 -74856556 - B3 SINE B2 -11 205 1 9 1518 4121 128 78 25 chr1 122339012 122339730 -74855702 - RMER6A LTR ERVK 0 756 1 9 1518 474 248 0 89 chr1 122339787 122339911 -74855521 - B3A SINE B2 -85 113 1 9 1518 387 0 0 0 chr1 122340054 122340097 -74855335 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1518 355 109 73 0 chr1 122340609 122340664 -74854768 + HAL1-3A_ME LINE L1 1976 2034 -824 9 1518 457 138 0 0 chr1 122341109 122341174 -74854258 - B3A SINE B2 -131 67 3 9 1518 322 296 45 85 chr1 122341178 122341355 -74854077 - L1M5 LINE L1 -634 5490 5321 9 1518 335 67 0 43 chr1 122341431 122341467 -74853965 - HAL1-3A_ME LINE L1 -846 2012 1977 9 1518 746 269 23 0 chr1 122341467 122341642 -74853790 - B3A SINE B2 -16 182 4 9 1518 2691 132 61 42 chr1 122341721 122342197 -74853235 + RLTR28 LTR ERVL 3 487 -37 9 1518 6260 152 70 59 chr1 122342199 122342719 -74852713 + RMER12 LTR ERVK 4 509 -813 9 1518 288 0 0 0 chr1 122342719 122342751 -74852681 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 9 1518 6260 152 70 59 chr1 122342751 122343064 -74852368 + RMER12 LTR ERVK 510 798 -524 9 1518 3260 51 5 8 chr1 122343064 122343461 -74851971 - MTA_Mm LTR MaLR 0 396 1 9 1518 6260 152 70 59 chr1 122343461 122343749 -74851683 + RMER12 LTR ERVK 799 1128 -194 9 1518 450 0 0 0 chr1 122343749 122343799 -74851633 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1518 6260 152 70 59 chr1 122343799 122343980 -74851452 + RMER12 LTR ERVK 1129 1322 0 9 1518 285 243 51 86 chr1 122343980 122344023 -74851409 + RLTR28 LTR ERVL 486 524 0 9 1518 1187 62 0 0 chr1 122344110 122344255 -74851177 - B1_Mus1 SINE Alu 0 148 4 9 1518 820 213 44 187 chr1 122344340 122344565 -74850867 - B3A SINE B2 0 198 2 9 1518 421 193 9 18 chr1 122344809 122344920 -74850512 + CT-rich Low_complexity Low_complexity 5 114 0 9 1518 1492 220 62 34 chr1 122345843 122346200 -74849232 - MTEb LTR MaLR -10 369 3 9 1518 180 0 0 0 chr1 122346520 122346540 -74848892 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1518 428 159 186 0 chr1 122346591 122346704 -74848728 + Lx7 LINE L1 7483 7616 -80 9 1518 1033 245 172 29 chr1 122346704 122347116 -74848316 + RMER5 LTR ERV1 64 534 0 9 1518 437 243 66 41 chr1 122347274 122347430 -74848002 - MLT1A1 LTR MaLR -12 396 201 9 1518 23 0 0 0 chr1 122347565 122347588 -74847844 + AT_rich Low_complexity Low_complexity 1 23 0 9 1518 1255 54 0 0 chr1 122347588 122347735 -74847697 - B1_Mus2 SINE Alu 0 147 1 9 1518 304 238 148 12 chr1 122347779 122347860 -74847572 - ID_B1 SINE B4 -69 155 64 9 1518 231 272 73 55 chr1 122347901 122348010 -74847422 - MLT1A1 LTR MaLR -295 113 3 9 1518 606 327 55 35 chr1 122349273 122349527 -74845905 + RMER15 LTR ERVL 197 455 -120 9 1518 221 131 21 21 chr1 122349527 122349574 -74845858 + A-rich Low_complexity Low_complexity 4 50 0 9 1518 355 268 47 35 chr1 122349775 122349860 -74845572 + ID SINE ID 2 87 -137 9 1518 283 78 39 0 chr1 122350031 122350082 -74845350 + (TATG)n Simple_repeat Simple_repeat 4 56 0 9 1518 1023 213 105 54 chr1 122350098 122350356 -74845076 - B4 SINE B4 -5 287 17 9 1518 628 279 0 0 chr1 122350439 122350568 -74844864 + B1_Mur2 SINE Alu 8 136 -13 9 1518 271 250 12 23 chr1 122350579 122350665 -74844767 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 9 1518 1097 230 35 88 chr1 122351409 122351809 -74843623 + MTE2a LTR MaLR 1 379 0 9 1518 1023 253 64 64 chr1 122352035 122352132 -74843300 + B4 SINE B4 2 84 -208 9 1518 1287 96 62 0 chr1 122352132 122352310 -74843122 + B2_Mm2 SINE B2 2 190 -5 9 1518 1023 253 64 64 chr1 122352310 122352495 -74842937 + B4 SINE B4 85 284 -8 9 1518 903 234 6 0 chr1 122352509 122352684 -74842748 - MTEb LTR MaLR -179 200 25 9 1518 528 286 77 0 chr1 122352705 122352873 -74842559 - FordPrefect DNA Tip100 -563 1120 940 9 1518 228 430 35 0 chr1 122352891 122353005 -74842427 - FordPrefect DNA Tip100 -809 874 757 9 1518 519 323 154 11 chr1 122353052 122353337 -74842095 - FordPrefect DNA Tip100 -1008 675 350 9 1518 295 370 135 29 chr1 122353380 122353625 -74841807 - FordPrefect DNA Tip100 -1399 284 14 9 1518 224 300 24 24 chr1 122353799 122353881 -74841551 + MIRb SINE MIR 26 107 -161 9 1518 251 315 0 0 chr1 122353953 122354026 -74841406 + MIRc SINE MIR 70 142 -126 9 1518 1250 193 110 47 chr1 122354153 122354517 -74840915 - Lx9 LINE L1 -28 7616 7230 9 1518 243 0 0 0 chr1 122354526 122354553 -74840879 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1518 972 68 98 0 chr1 122354560 122354693 -74840739 - B1_Mus2 SINE Alu 0 147 2 9 1518 829 198 36 52 chr1 122354710 122354902 -74840530 - ID_B1 SINE B4 -20 204 16 9 1518 252 234 16 0 chr1 122354960 122355024 -74840408 - ID SINE ID -159 65 1 9 1518 217 225 0 0 chr1 122355058 122355098 -74840334 + polypurine Low_complexity Low_complexity 2 41 0 9 1518 432 247 12 0 chr1 122355103 122355184 -74840248 - RSINE1 SINE B4 -31 134 53 9 1518 284 143 18 0 chr1 122355187 122355243 -74840189 + C-rich Low_complexity Low_complexity 6 62 0 9 1518 337 327 72 36 chr1 122355695 122355917 -74839515 + L1M5 LINE L1 5371 5600 -524 9 1518 377 247 13 0 chr1 122355961 122356038 -74839394 - ID4_ SINE ID -1 82 5 9 1518 223 281 0 0 chr1 122356050 122356079 -74839353 + polypyrimidine Low_complexity Low_complexity 29 57 0 9 1518 640 41 41 0 chr1 122356079 122356177 -74839255 + (TCTG)n Simple_repeat Simple_repeat 2 103 0 9 1518 223 281 0 0 chr1 122356177 122356204 -74839228 + polypyrimidine Low_complexity Low_complexity 2 28 0 9 1518 369 0 0 0 chr1 122356206 122356247 -74839185 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1518 313 284 28 56 chr1 122356247 122356355 -74839077 - PB1D7 SINE Alu -11 109 5 9 1518 676 210 14 14 chr1 122356368 122356508 -74838924 - B4 SINE B4 -152 140 1 9 1518 1234 251 74 35 chr1 122356886 122357225 -74838207 - MTEa LTR MaLR 0 379 28 9 1518 225 238 127 0 chr1 122357406 122357469 -74837963 - RMER30 DNA MER1_type 0 202 132 9 1518 434 284 0 41 chr1 122357591 122357712 -74837720 - RMER30 DNA MER1_type -86 116 1 9 1518 780 276 74 96 chr1 122357712 122357828 -74837604 + MTE2a LTR MaLR 42 163 -256 9 1518 4221 53 60 8 chr1 122357828 122358360 -74837072 - LTRIS2 LTR ERV1 0 564 5 9 1518 780 242 69 108 chr1 122358360 122358622 -74836810 + MTE2a LTR MaLR 132 379 0 9 1518 669 232 129 35 chr1 122358937 122359138 -74836294 + B4A SINE B4 1 220 -72 9 1518 1163 214 5 5 chr1 122359421 122359437 -74835995 + MTD LTR MaLR 1 16 -403 9 1518 216 0 0 0 chr1 122359437 122359461 -74835971 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1518 1163 214 5 5 chr1 122359461 122359665 -74835767 + MTD LTR MaLR 17 220 -199 9 1518 702 212 7 33 chr1 122360674 122360825 -74834607 - B1_Mur2 SINE Alu -1 148 2 9 1518 1018 222 14 5 chr1 122361413 122361626 -74833806 - B3 SINE B2 0 216 2 9 1518 899 221 31 40 chr1 122361969 122362154 -74833278 - ID_B1 SINE B4 -2 222 33 9 1518 2240 172 39 12 chr1 122362154 122362561 -74832871 + MTC LTR MaLR 2 419 -2 9 1518 899 221 31 40 chr1 122362561 122362597 -74832835 - ID SINE ID -192 32 3 9 1518 439 268 182 71 chr1 122363038 122363307 -74832125 - RMER15 LTR ERVL -2 573 275 9 1518 573 240 8 55 chr1 122364468 122364596 -74830836 + ID_B1 SINE B4 3 124 -100 9 1518 309 274 54 93 chr1 122365152 122365373 -74830059 + MIRc SINE MIR 3 240 -28 9 1518 252 0 0 0 chr1 122365393 122365421 -74830011 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1518 705 12 0 0 chr1 122365858 122365940 -74829492 + (CA)n Simple_repeat Simple_repeat 2 83 0 9 1518 439 333 40 47 chr1 122366996 122367014 -74828418 + B4 SINE B4 77 223 -69 9 1518 729 192 62 0 chr1 122367014 122367144 -74828288 + B1_Mur1 SINE Alu 10 147 -2 9 1518 305 343 10 0 chr1 122367210 122367309 -74828123 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1518 469 276 11 102 chr1 122367323 122367509 -74827923 - B4A SINE B4 0 292 124 9 1518 401 353 6 6 chr1 122367604 122367772 -74827660 + (CA)n Simple_repeat Simple_repeat 1 168 0 9 1518 211 374 0 0 chr1 122367785 122367876 -74827556 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1518 204 163 0 0 chr1 122367899 122367942 -74827490 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1518 180 125 0 0 chr1 122367964 122367996 -74827436 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1518 243 239 0 0 chr1 122368024 122368112 -74827320 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 1518 219 222 179 36 chr1 122368226 122368310 -74827122 - L2b LINE L2 -18 3357 3262 9 1518 738 268 0 144 chr1 122368563 122368820 -74826612 - ID_B1 SINE B4 -1 223 4 9 1518 576 235 35 0 chr1 122369218 122369333 -74826099 - B3 SINE B2 -28 188 70 9 1518 341 269 0 13 chr1 122369998 122370077 -74825355 - ID_B1 SINE B4 -10 214 137 9 1518 322 269 0 0 chr1 122370092 122370159 -74825273 - ID SINE ID -142 82 16 9 1518 597 292 103 38 chr1 122370298 122370483 -74824949 - B3A SINE B2 -13 203 7 9 1518 673 196 72 0 chr1 122370493 122370631 -74824801 - B3A SINE B2 -46 152 5 9 1518 446 268 22 26 chr1 122371782 122371938 -74823494 + B4A SINE B4 5 161 -131 9 1518 377 307 26 9 chr1 122372137 122372252 -74823180 - PB1D10 SINE Alu 0 117 1 1 1518 592 255 62 166 chr1 122372281 122372606 -74822826 + B4A SINE B4 1 291 -1 1 1518 239 326 54 74 chr1 122372812 122372961 -74822471 + MLT1K LTR MaLR 196 341 -254 1 1518 342 309 11 39 chr1 122373587 122373769 -74821663 + GA-rich Low_complexity Low_complexity 4 180 0 1 1518 371 221 32 75 chr1 122375169 122375262 -74820170 + B1_Mur1 SINE Alu 24 112 -37 1 1518 224 212 0 15 chr1 122375472 122375539 -74819893 + GA-rich Low_complexity Low_complexity 1 66 0 1 1518 1157 253 25 29 chr1 122376400 122376681 -74818751 - B4 SINE B4 -2 290 11 1 1518 195 42 0 0 chr1 122376825 122376849 -74818583 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 1518 500 271 8 0 chr1 122376851 122376973 -74818459 - RSINE1 SINE B4 -41 124 2 1 1518 574 268 97 23 chr1 122377448 122377645 -74817787 - B4 SINE B4 -86 206 3 1 1518 269 237 0 33 chr1 122378156 122378217 -74817215 - MER5A DNA MER1_type -75 114 56 1 1518 183 301 116 21 chr1 122378317 122378412 -74817020 + MIRb SINE MIR 24 127 -141 1 1518 806 275 109 15 chr1 122378453 122378719 -74816713 - B4A SINE B4 -1 291 1 1 1518 249 33 0 0 chr1 122379460 122379490 -74815942 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1518 1044 274 35 21 chr1 122379628 122379915 -74815517 - B4 SINE B4 0 292 2 1 1518 414 0 0 0 chr1 122380068 122380114 -74815318 + (TGAG)n Simple_repeat Simple_repeat 4 49 0 1 1518 628 267 68 0 chr1 122381785 122381946 -74813486 + ID_B1 SINE B4 52 223 -1 1 1518 459 52 0 0 chr1 122381948 122382006 -74813426 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 1 1518 1116 128 0 0 chr1 122382010 122382189 -74813243 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 1 1518 734 261 108 30 chr1 122383419 122383688 -74811744 - B4 SINE B4 0 292 3 1 1518 873 255 66 37 chr1 122383916 122383999 -74811433 + B4A SINE B4 1 84 -208 1 1518 440 48 16 0 chr1 122383999 122384062 -74811370 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1518 873 255 66 37 chr1 122384062 122384222 -74811210 + B4A SINE B4 85 251 -41 1 1518 319 295 84 37 chr1 122385342 122385514 -74809918 + MIRb SINE MIR 6 177 -91 1 1518 266 386 6 6 chr1 122386382 122386559 -74808873 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1518 523 74 25 0 chr1 122387010 122387091 -74808341 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 1518 534 294 95 11 chr1 122387850 122388029 -74807403 + B3A SINE B2 5 198 0 1 1518 373 271 197 7 chr1 122388252 122388404 -74807028 - B3A SINE B2 -16 182 2 1 1518 1693 231 77 22 chr1 122389282 122389737 -74805695 + RMER5 LTR ERV1 40 519 -15 1 1518 381 247 43 11 chr1 122390526 122390620 -74804812 + ID_B1 SINE B4 3 99 -125 1 1518 471 250 80 0 chr1 122390998 122391098 -74804334 + B4 SINE B4 140 247 -45 1 1518 363 23 0 0 chr1 122391111 122391155 -74804277 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1518 430 260 10 36 chr1 122391597 122391725 -74803707 + B4 SINE B4 121 246 -46 1 1518 774 127 0 0 chr1 122391728 122391854 -74803578 + (GGA)n Simple_repeat Simple_repeat 2 127 0 1 1518 315 327 95 18 chr1 122391900 122392068 -74803364 + HAL1-3A_ME LINE L1 2284 2464 -394 1 1518 213 39 0 0 chr1 122392322 122392348 -74803084 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1518 678 69 0 0 chr1 122392382 122392483 -74802949 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1518 242 360 43 17 chr1 122392702 122392818 -74802614 - MER2 DNA MER2_type 0 345 227 1 1518 364 271 74 57 chr1 122393034 122393269 -74802163 + B4 SINE B4 3 292 0 1 1518 308 314 94 38 chr1 122393326 122393538 -74801894 + L3 LINE CR1 2041 2264 -2225 1 1518 2156 145 12 0 chr1 122393561 122393886 -74801546 - ORR1A4 LTR MaLR 0 329 1 1 1518 386 286 0 45 chr1 122393953 122394063 -74801369 + B4 SINE B4 173 277 -15 1 1518 414 94 0 0 chr1 122394078 122394142 -74801290 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1518 642 296 127 41 chr1 122394161 122394626 -74800806 + L1MDa LINE L1 1721 2225 -4408 1 1518 1081 240 78 59 chr1 122394776 122395102 -74800330 + ORR1E LTR MaLR 33 421 0 1 1518 560 258 109 33 chr1 122395313 122395589 -74799843 + L1MDa LINE L1 2851 3147 -3390 1 1518 508 265 17 0 chr1 122395609 122395726 -74799706 + B4A SINE B4 1 119 -173 1 1518 677 205 127 35 chr1 122395744 122395941 -74799491 + B3 SINE B2 1 215 -1 1 1518 653 300 88 3 chr1 122395969 122396300 -74799132 + L1MDa LINE L1 4404 4762 -1775 1 1518 854 231 10 49 chr1 122396312 122396517 -74798915 + B3A SINE B2 2 198 0 1 1518 562 321 85 11 chr1 122396546 122396911 -74798521 + L1MDa LINE L1 4786 5177 -1360 1 1518 465 287 0 0 chr1 122396935 122397071 -74798361 - L1MC LINE L1 -2311 3835 3700 1 1518 242 286 0 28 chr1 122397095 122397167 -74798265 + RCHARR1 DNA MER1_type 47 116 -858 1 1518 324 333 136 0 chr1 122397194 122397356 -74798076 + RCHARR1 DNA MER1_type 210 393 -581 1 1518 398 283 151 61 chr1 122397603 122397848 -74797584 + B4 SINE B4 3 269 -23 1 1518 387 0 0 0 chr1 122397974 122398017 -74797415 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1518 405 154 31 0 chr1 122398022 122398087 -74797345 - RSINE1 SINE B4 -30 135 69 1 1518 264 248 113 87 chr1 122398512 122398538 -74796894 + MT2B LTR ERVL 123 151 -450 1 1518 725 152 31 31 chr1 122398538 122398667 -74796765 + B1_Mur2 SINE Alu 1 129 -20 1 1518 264 233 0 0 chr1 122398683 122398756 -74796676 + GA-rich Low_complexity Low_complexity 2 74 0 1 1518 429 266 83 0 chr1 122398920 122399029 -74796403 + B4A SINE B4 1 118 -174 1 1518 265 93 0 36 chr1 122399166 122399222 -74796210 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1518 489 305 17 0 chr1 122399260 122399378 -74796054 - B4A SINE B4 -14 278 159 1 1518 378 0 0 0 chr1 122399624 122399666 -74795766 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1518 342 0 0 0 chr1 122399666 122399703 -74795729 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1518 224 218 18 35 chr1 122399880 122399921 -74795511 + B4A SINE B4 56 95 -197 1 1518 450 246 18 0 chr1 122399921 122400031 -74795401 + B3A SINE B2 1 112 -86 1 1518 539 273 17 80 chr1 122400190 122400365 -74795067 + RSINE1 SINE B4 1 164 -1 1 1518 234 191 43 0 chr1 122400462 122400509 -74794923 + B4A SINE B4 158 206 -86 1 1518 329 183 10 0 chr1 122400509 122400613 -74794819 + GA-rich Low_complexity Low_complexity 1 105 0 1 1518 373 337 105 5 chr1 122400700 122400900 -74794532 - ID_B1 SINE B4 -3 221 2 1 1518 461 299 98 94 chr1 122401879 122402082 -74793350 + B4A SINE B4 3 206 -86 1 1518 452 152 10 0 chr1 122402088 122402187 -74793245 + GA-rich Low_complexity Low_complexity 1 100 0 1 1518 684 271 6 48 chr1 122402212 122402379 -74793053 + RSINE1 SINE B4 4 163 -2 1 1518 306 0 0 0 chr1 122402466 122402500 -74792932 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1518 1135 194 62 159 chr1 122402811 122403014 -74792418 - RLTR9C LTR ERVK 0 393 224 1 1518 3136 36 12 40 chr1 122403014 122403415 -74792017 + RLTR10 LTR ERVK 1 390 0 1 1518 1135 194 62 159 chr1 122403415 122403646 -74791786 - RLTR9C LTR ERVK -170 223 1 1 1518 883 281 39 55 chr1 122403684 122403940 -74791492 + B4 SINE B4 35 286 -6 1 1518 809 258 42 14 chr1 122404250 122404462 -74790970 + B4 SINE B4 2 219 -73 1 1518 519 239 35 26 chr1 122404471 122404587 -74790845 + RSINE1 SINE B4 3 119 -46 1 1518 396 91 0 0 chr1 122404595 122404661 -74790771 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1518 207 69 0 0 chr1 122405138 122405167 -74790265 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1518 1229 249 24 14 chr1 122405174 122405463 -74789969 - B4 SINE B4 0 292 1 1 1518 359 292 202 29 chr1 122405551 122405794 -74789638 - B4A SINE B4 -6 286 2 1 1518 1069 92 0 0 chr1 122406758 122406899 -74788533 + B2_Mm2 SINE B2 1 141 -54 1 1518 726 289 37 20 chr1 122407163 122407471 -74787961 + L1MA4A LINE L1 5592 5930 -373 1 1518 1294 221 72 105 chr1 122407659 122408049 -74787383 + MTE2a LTR MaLR 1 377 -2 1 1518 315 0 0 0 chr1 122408358 122408393 -74787039 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1518 216 310 0 14 chr1 122408393 122408465 -74786967 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1518 269 351 0 0 chr1 122408467 122408632 -74786800 + CT-rich Low_complexity Low_complexity 2 166 0 1 1518 317 339 0 0 chr1 122408577 122408751 -74786681 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1518 408 111 0 0 chr1 122408770 122408833 -74786599 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 1 1518 297 75 0 0 chr1 122408901 122408941 -74786491 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1518 714 283 48 0 chr1 122408951 122409138 -74786294 - B4 SINE B4 -8 284 89 1 1518 947 272 16 77 chr1 122409177 122409488 -74785944 - B4A SINE B4 0 292 1 1 1518 347 209 104 0 chr1 122409504 122409571 -74785861 - B4 SINE B4 -212 80 7 1 1518 342 323 120 110 chr1 122409579 122410154 -74785278 + L2 LINE L2 914 1457 -1962 1 1518 649 252 107 42 chr1 122410154 122410318 -74785114 - B4 SINE B4 -10 282 97 1 1518 1214 89 0 16 chr1 122410318 122410501 -74784931 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1518 1136 56 28 0 chr1 122410501 122410644 -74784788 - B1_Mm SINE Alu 0 147 1 1 1518 649 252 107 42 chr1 122410644 122410739 -74784693 - B4 SINE B4 -196 96 6 1 1518 342 323 120 110 chr1 122410739 122411251 -74784181 + L2 LINE L2 1458 2012 -1407 1 1518 1093 173 60 15 chr1 122411348 122411548 -74783884 + MTC LTR MaLR 1 209 -212 1 1518 990 250 35 0 chr1 122411549 122411777 -74783655 + Lx6 LINE L1 7197 7432 -28 1 1518 735 196 14 7 chr1 122411780 122411798 -74783634 + MTC LTR MaLR 196 215 -206 1 1518 249 33 0 0 chr1 122411798 122411828 -74783604 + (CAGG)n Simple_repeat Simple_repeat 4 33 0 1 1518 735 196 14 7 chr1 122411828 122411948 -74783484 + MTC LTR MaLR 216 334 -87 1 1518 280 227 120 0 chr1 122411915 122411990 -74783442 - ID_B1 SINE B4 -87 137 54 1 1518 413 244 0 0 chr1 122412294 122412380 -74783052 + B4 SINE B4 3 88 -204 1 1518 393 95 0 0 chr1 122412442 122412505 -74782927 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1518 1072 269 94 18 chr1 122412544 122412640 -74782792 + L1M3 LINE L1 2478 2591 -3549 1 1518 680 245 141 114 chr1 122412640 122412788 -74782644 - MTE2a LTR MaLR 0 379 219 1 1518 197 59 0 56 chr1 122412788 122412824 -74782608 + (CACGA)n Simple_repeat Simple_repeat 4 37 0 1 1518 668 35 11 0 chr1 122412825 122412912 -74782520 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 1518 680 245 141 114 chr1 122412912 122413130 -74782302 - MTE2a LTR MaLR -161 218 1 1 1518 1072 269 94 18 chr1 122413130 122413491 -74781941 + L1M3 LINE L1 2592 2969 -3171 1 1518 276 149 0 0 chr1 122413542 122413589 -74781843 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1518 444 147 0 0 chr1 122413621 122413696 -74781736 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1518 273 209 0 29 chr1 122413712 122413781 -74781651 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1518 732 282 137 60 chr1 122413785 122414019 -74781413 + B4A SINE B4 5 256 -36 1 1518 384 22 0 0 chr1 122414020 122414065 -74781367 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1518 432 0 0 0 chr1 122414065 122414112 -74781320 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1518 441 345 17 51 chr1 122414516 122414693 -74780739 + MTE2a LTR MaLR 1 171 -208 1 1518 432 0 0 0 chr1 122414693 122414741 -74780691 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1518 724 243 27 0 chr1 122414743 122414891 -74780541 - B3A SINE B2 -46 152 1 1 1518 528 281 79 14 chr1 122414907 122415117 -74780315 + MTE2a LTR MaLR 193 405 -14 1 1518 452 289 401 0 chr1 122415508 122415665 -74779767 + ID_B1 SINE B4 3 222 -2 1 1518 291 320 0 0 chr1 122415665 122415740 -74779692 + polypurine Low_complexity Low_complexity 2 76 0 1 1518 684 240 0 0 chr1 122415740 122415919 -74779513 + GA-rich Low_complexity Low_complexity 1 179 0 1 1518 1062 237 93 8 chr1 122416583 122416842 -74778590 - B4 SINE B4 -7 285 5 1 1518 802 116 0 0 chr1 122417105 122417217 -74778215 + B2_Mm2 SINE B2 1 112 -83 1 1518 245 256 12 0 chr1 122417806 122417888 -74777544 + GA-rich Low_complexity Low_complexity 3 85 0 1 1518 866 342 17 35 chr1 122417888 122418176 -74777256 + B4 SINE B4 2 284 -8 1 1518 1073 202 240 15 chr1 122418445 122418787 -74776645 - MTD LTR MaLR 0 419 1 1 1518 383 279 89 25 chr1 122418809 122418967 -74776465 - RMER30 DNA MER1_type -1 201 34 1 1518 474 236 156 8 chr1 122419365 122419493 -74775939 + B1_Mur1 SINE Alu 1 147 -2 1 1518 801 131 0 0 chr1 122419502 122419632 -74775800 + (GGAAA)n Simple_repeat Simple_repeat 4 133 0 1 1518 483 269 141 38 chr1 122419682 122419945 -74775487 + B4A SINE B4 3 292 0 1 1518 295 272 7 7 chr1 122419945 122420093 -74775339 + (CA)n Simple_repeat Simple_repeat 1 148 0 1 1518 198 118 0 0 chr1 122420153 122420187 -74775245 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1518 1042 250 35 31 chr1 122420211 122420500 -74774932 + B4 SINE B4 1 290 -2 1 1518 363 137 0 0 chr1 122420508 122420581 -74774851 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1518 715 224 109 5 chr1 122421058 122421242 -74774190 + B4 SINE B4 26 228 -64 1 189 224 365 14 0 chr1 122421247 122421321 -74774111 + RSINE1 SINE B4 26 100 -65 1 1519 924 128 50 0 chr1 122421436 122421577 -74773855 - B1_Mus1 SINE Alu 0 148 1 1 1519 314 261 53 32 chr1 122421603 122421698 -74773734 + B4 SINE B4 195 291 -1 1 1519 2232 107 3 58 chr1 122421805 122422153 -74773279 - ORR1A4 LTR MaLR 0 329 1 1 1519 26 30 0 0 chr1 122422455 122422488 -74772944 + AT_rich Low_complexity Low_complexity 1 33 0 1 1519 419 283 58 19 chr1 122422504 122422659 -74772773 - RSINE1 SINE B4 -2 163 3 1 1519 378 0 0 0 chr1 122422790 122422832 -74772600 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1519 445 235 88 0 chr1 122422833 122422935 -74772497 - Lx8 LINE L1 -354 7119 7009 1 1519 354 297 12 98 chr1 122423010 122423174 -74772258 - RSINE1 SINE B4 -13 152 3 1 1519 261 132 24 24 chr1 122423385 122423470 -74771962 + A-rich Low_complexity Low_complexity 1 85 0 1 1519 27 0 0 0 chr1 122423556 122423583 -74771849 + AT_rich Low_complexity Low_complexity 1 27 0 1 1519 248 327 27 0 chr1 122423584 122423694 -74771738 + L1M4 LINE L1 3999 4111 -2035 1 1519 357 293 53 41 chr1 122423828 122423999 -74771433 + MTD LTR MaLR 2 174 -245 1 1519 1322 284 72 43 chr1 122423918 122424363 -74771069 + MT2A LTR ERVL 63 520 -13 1 1519 1829 135 80 38 chr1 122424560 122424899 -74770533 - ORR1B2 LTR MaLR -8 359 7 1 1519 364 243 0 119 chr1 122425683 122425809 -74769623 + MT2B LTR ERVL 154 264 -337 1 1519 895 158 14 0 chr1 122425698 122425844 -74769588 + B1_Mus1 SINE Alu 1 148 0 1 1519 499 167 9 9 chr1 122425845 122425947 -74769485 + GA-rich Low_complexity Low_complexity 2 104 0 1 1519 1085 119 0 11 chr1 122425947 122426126 -74769306 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 1519 499 167 9 9 chr1 122426126 122426138 -74769294 + polypurine Low_complexity Low_complexity 105 116 0 1 1519 2347 219 46 71 chr1 122426209 122426844 -74768588 - RMER20B LTR ERVK -8 619 1 1 1519 432 0 0 0 chr1 122426973 122427021 -74768411 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1519 441 36 0 0 chr1 122428695 122428750 -74766682 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1519 294 87 0 0 chr1 122428750 122428796 -74766636 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1519 21 36 0 0 chr1 122429904 122429932 -74765500 + AT_rich Low_complexity Low_complexity 1 28 0 1 1519 582 223 30 43 chr1 122429980 122430144 -74765288 + RSINE1 SINE B4 4 165 0 1 1519 939 232 103 104 chr1 122430985 122431394 -74764038 + MT2A LTR ERVL 10 538 -63 1 1519 423 0 0 0 chr1 122431394 122431441 -74763991 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1519 918 237 125 59 chr1 122431441 122431478 -74763954 + MT2A LTR ERVL 539 601 0 1 1519 297 291 0 76 chr1 122431512 122431631 -74763801 - B3A SINE B2 -84 114 5 1 1519 501 225 0 26 chr1 122431831 122431945 -74763487 + PB1D10 SINE Alu 5 115 -2 1 1519 295 259 0 0 chr1 122431999 122432053 -74763379 + PB1D10 SINE Alu 54 107 -10 1 1519 207 69 0 0 chr1 122432080 122432109 -74763323 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1519 240 261 169 0 chr1 122432118 122432183 -74763249 + PB1D7 SINE Alu 31 106 -14 1 1519 227 296 48 90 chr1 122432500 122432645 -74762787 + MTEb LTR MaLR 226 364 -15 1 1519 947 325 14 34 chr1 122432900 122433196 -74762236 - B4A SINE B4 -2 290 1 1 1519 400 217 43 0 chr1 122433197 122433289 -74762143 + RMER30 DNA MER1_type 7 102 -100 1 1519 626 37 12 0 chr1 122433905 122433986 -74761446 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1519 583 296 82 31 chr1 122434243 122434438 -74760994 - B4A SINE B4 -6 286 82 1 1519 508 291 87 0 chr1 122434509 122434705 -74760727 - ID_B1 SINE B4 -9 215 3 1 1519 695 271 25 41 chr1 122435383 122435579 -74759853 - ID_B1 SINE B4 -6 218 26 1 1519 309 238 35 12 chr1 122436298 122436383 -74759049 + ID_B1 SINE B4 136 222 -2 1 1519 925 258 97 16 chr1 122436895 122437105 -74758327 + B4A SINE B4 3 214 -78 1 1519 467 33 16 0 chr1 122437105 122437166 -74758266 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1519 925 258 97 16 chr1 122437166 122437203 -74758229 + B4A SINE B4 215 270 -22 1 1519 279 54 0 0 chr1 122437221 122437258 -74758174 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1519 761 273 36 18 chr1 122437824 122438048 -74757384 + RMER15 LTR ERVL 348 575 0 1 1519 297 336 28 56 chr1 122438048 122438172 -74757260 + MLT1L LTR MaLR 419 538 -72 1 1519 306 0 0 0 chr1 122438448 122438482 -74756950 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1519 1141 279 19 4 chr1 122438503 122438769 -74756663 - B4 SINE B4 -4 288 19 1 1519 276 202 16 40 chr1 122438772 122438848 -74756584 - MLT1J1 LTR MaLR -366 78 3 1 1519 623 263 61 88 chr1 122439065 122439336 -74756096 - MLT1B LTR MaLR -71 319 57 1 1519 369 0 0 0 chr1 122439336 122439377 -74756055 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1519 623 263 61 88 chr1 122439377 122439401 -74756031 - MLT1B LTR MaLR -334 56 33 1 1519 262 333 105 33 chr1 122439419 122439571 -74755861 - LTR31 LTR ERV1 -16 603 441 1 1519 227 309 69 40 chr1 122439612 122439713 -74755719 - LTR31 LTR ERV1 -153 466 363 1 1519 394 262 35 61 chr1 122439981 122440095 -74755337 + RMER30 DNA MER1_type 72 182 -20 1 1519 427 212 12 0 chr1 122440186 122440266 -74755166 + B3A SINE B2 1 81 -117 1 1519 543 31 0 0 chr1 122440316 122440381 -74755051 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1519 796 227 93 0 chr1 122440445 122440639 -74754793 + B3 SINE B2 5 216 0 1 1519 502 278 60 0 chr1 122441492 122441643 -74753789 + RSINE1 SINE B4 5 164 -1 1 1519 297 0 0 0 chr1 122441660 122441693 -74753739 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1519 447 194 26 34 chr1 122441779 122441932 -74753500 + ID_B1 SINE B4 3 197 -27 1 1519 492 269 121 0 chr1 122442052 122442201 -74753231 + MLT1B LTR MaLR 223 389 -1 1 1519 229 191 0 0 chr1 122442308 122442355 -74753077 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1519 401 257 92 7 chr1 122442407 122442548 -74752884 - B4A SINE B4 -95 197 45 1 1519 363 57 22 54 chr1 122442549 122442641 -74752791 + (CAAAAA)n Simple_repeat Simple_repeat 4 92 0 1 1519 252 0 0 0 chr1 122443282 122443310 -74752122 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 1 1519 1363 244 77 14 chr1 122443428 122443625 -74751807 - MTEa LTR MaLR 0 379 162 1 1519 297 0 0 0 chr1 122443625 122443658 -74751774 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1519 468 0 0 0 chr1 122443658 122443709 -74751723 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1519 1401 244 77 14 chr1 122443709 122443863 -74751569 - MTEa LTR MaLR -218 161 6 1 1519 409 75 0 0 chr1 122443890 122443943 -74751489 + B3 SINE B2 1 53 -163 1 1519 510 229 135 7 chr1 122443950 122444091 -74751341 + MTE2b LTR MaLR 205 363 -16 1 1519 755 183 32 13 chr1 122444336 122444491 -74750941 + ORR1E LTR MaLR 1 158 -201 1 1519 290 247 156 0 chr1 122444532 122444609 -74750823 + ORR1E LTR MaLR 284 372 -7 1 1519 910 268 29 36 chr1 122444992 122445271 -74750161 + B4A SINE B4 2 278 -14 1 1519 1350 67 0 0 chr1 122445305 122445483 -74749949 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1519 700 153 7 7 chr1 122445483 122445621 -74749811 + GA-rich Low_complexity Low_complexity 2 139 0 1 1519 369 289 245 31 chr1 122445958 122446172 -74749260 - LTR41B LTR ERVL -516 279 10 1 1519 396 0 0 0 chr1 122446176 122446220 -74749212 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1519 1010 106 5 27 chr1 122447062 122447246 -74748186 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1519 180 176 0 0 chr1 122447246 122447280 -74748152 + CT-rich Low_complexity Low_complexity 2 35 0 1 1519 7223 143 53 28 chr1 122447290 122448998 -74746434 - Lx5 LINE L1 -1 7049 5294 1 1519 1688 142 23 1 chr1 122448999 122449297 -74746135 - ORR1A3 LTR MaLR -8 338 27 1 1519 3314 43 2 10 chr1 122449679 122450078 -74745354 + MTA_Mm LTR MaLR 1 396 0 1 1519 753 267 94 94 chr1 122450543 122450670 -74744762 + RMER17A-int LTR ERVK 1246 1357 -371 1 1519 3566 212 122 54 chr1 122450670 122451517 -74743915 + RMER13B LTR ERVK 5 908 0 1 1519 753 267 94 94 chr1 122451517 122451868 -74743564 + RMER17A-int LTR ERVK 1358 1724 -4 1 1519 2499 208 80 28 chr1 122451869 122452409 -74743023 + RMER13A LTR ERVK 1 568 -292 1 1519 1713 182 60 29 chr1 122452409 122452759 -74742673 - Lx5 LINE L1 -211 6839 6479 1 1519 591 219 70 65 chr1 122452938 122453153 -74742279 + B3 SINE B2 1 216 0 1 1519 361 303 46 66 chr1 122453160 122453312 -74742120 - B1F SINE Alu 0 149 1 1 1519 243 304 0 0 chr1 122453339 122453395 -74742037 + polypyrimidine Low_complexity Low_complexity 3 58 0 1 1519 749 278 123 8 chr1 122453466 122453702 -74741730 - B4A SINE B4 -28 264 2 1 1519 328 328 117 53 chr1 122454445 122454709 -74740723 + B4 SINE B4 1 281 -11 1 1519 435 246 76 8 chr1 122455031 122455162 -74740270 + ID_B1 SINE B4 5 144 -80 1 1519 182 187 25 4 chr1 122455872 122455918 -74739514 - MIR SINE MIR -115 161 110 1 1519 930 311 47 11 chr1 122455930 122456167 -74739265 + B4 SINE B4 1 248 -44 1 1519 398 67 40 13 chr1 122456167 122456243 -74739189 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1519 930 311 47 11 chr1 122456243 122456281 -74739151 + B4 SINE B4 249 286 -6 1 1519 576 243 33 73 chr1 122456612 122456763 -74738669 - B4A SINE B4 -145 147 3 1 1519 547 257 138 58 chr1 122457321 122457581 -74737851 + B4A SINE B4 2 282 -10 1 1519 515 233 0 32 chr1 122458063 122458088 -74737344 + (TCTCTG)n Simple_repeat Simple_repeat 3 27 0 1 1519 2541 86 74 23 chr1 122458088 122458479 -74736953 - IAPLTR2a LTR ERVK 0 411 1 1 1519 515 233 0 32 chr1 122458479 122458608 -74736824 + (TCTCTG)n Simple_repeat Simple_repeat 4 128 0 1 1519 776 200 15 0 chr1 122458618 122458748 -74736684 - B1_Mur1 SINE Alu -15 134 3 1 1519 556 127 0 29 chr1 122458750 122458855 -74736577 - L1Md_F2 LINE L1 0 6582 6481 1 1519 294 29 0 0 chr1 122458905 122458940 -74736492 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1519 438 254 42 28 chr1 122459110 122459252 -74736180 + B1F2 SINE Alu 1 144 -5 1 1519 667 321 15 1 chr1 122459342 122459519 -74735913 - B4 SINE B4 -73 219 32 1 1519 308 242 0 0 chr1 122459524 122459586 -74735846 - Lx8 LINE L1 -386 7087 7026 1 1519 627 237 30 0 chr1 122459657 122459788 -74735644 + B1_Mur1 SINE Alu 13 147 -2 1 1519 18477 75 42 6 chr1 122459820 122463191 -74732241 - L1VL4 LINE L1 0 3559 48 1 1519 937 232 34 0 chr1 122463705 122463882 -74731550 - B4A SINE B4 -2 290 108 1 1519 238 291 108 86 chr1 122463770 122463909 -74731523 - B1F SINE Alu -7 142 1 1 1519 597 224 88 140 chr1 122464317 122464376 -74731056 + B3 SINE B2 1 55 -161 1 1519 1197 68 0 0 chr1 122464376 122464524 -74730908 + B1_Mus1 SINE Alu 1 148 0 1 1519 597 224 88 140 chr1 122464524 122464692 -74730740 + B3 SINE B2 56 216 0 1 1519 716 298 134 40 chr1 122464777 122465001 -74730431 - ORR1E LTR MaLR 0 359 111 1 1519 2277 119 30 0 chr1 122465001 122465337 -74730095 - ORR1A1 LTR MaLR 0 346 1 1 1519 716 298 134 40 chr1 122465337 122465440 -74729992 - ORR1E LTR MaLR -249 110 1 1 1519 1053 254 27 110 chr1 122465649 122465733 -74729699 - MTE2b LTR MaLR -15 364 296 1 1519 1468 50 33 6 chr1 122465733 122465915 -74729517 - B2_Mm2 SINE B2 -8 187 1 1 1519 1053 273 38 93 chr1 122465915 122466250 -74729182 - MTE2b LTR MaLR -77 342 1 1 1519 22 0 0 0 chr1 122466494 122466516 -74728916 + AT_rich Low_complexity Low_complexity 1 22 0 1 1519 34 24 0 0 chr1 122466620 122466661 -74728771 + AT_rich Low_complexity Low_complexity 1 41 0 1 1519 2018 145 3 10 chr1 122466666 122466979 -74728453 + RLTR10E LTR ERVK 1 311 0 1 1519 1220 65 24 6 chr1 122466982 122467151 -74728281 + MMERVK10C-int LTR ERVK 1 172 -7409 1 1519 260 264 0 0 chr1 122467151 122467204 -74728228 + RLTR27 LTR ERVK 223 275 -34 1 1519 351 47 0 0 chr1 122467204 122467247 -74728185 + MMERVK10C-int LTR ERVK 225 267 -7314 1 1519 590 40 29 39 chr1 122467335 122467438 -74727994 + (GGAAA)n Simple_repeat Simple_repeat 3 104 0 1 1519 2809 15 95 6 chr1 122467448 122467785 -74727647 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1519 27905 23 1 1 chr1 122467785 122471056 -74724376 - IAPEz-int LTR ERVK 0 6481 3210 1 1519 6126 108 140 45 chr1 122471055 122472248 -74723184 - IAPEz-int LTR ERVK -5168 1313 8 1 1519 2809 15 95 6 chr1 122472248 122472585 -74722847 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1519 352 67 0 0 chr1 122472620 122472665 -74722767 + RLTR10-int LTR ERVK 93 137 -6405 1 1519 2596 72 14 3 chr1 122472668 122473017 -74722415 + RLTR10-int LTR ERVK 652 1004 -983 1 1519 417 337 30 33 chr1 122473033 122473429 -74722003 + RLTR10-int LTR ERVK 1172 1566 -6015 1 1519 363 140 0 0 chr1 122473446 122473503 -74721929 + IAP-d-int LTR ERVK 447 503 -6039 1 1519 1477 72 117 0 chr1 122473503 122473726 -74721706 + IAP-d-int LTR ERVK 5007 5255 -1287 1 1519 4210 130 15 3 chr1 122473730 122474408 -74721024 + IAPEY3-int LTR ERVK 6995 7680 0 1 1519 2121 136 3 6 chr1 122474408 122474720 -74720712 + RLTR10E LTR ERVK 1 311 0 1 1519 736 279 10 21 chr1 122474722 122474916 -74720516 - B3A SINE B2 -5 193 2 1 1519 528 321 94 0 chr1 122474951 122475110 -74720322 - ID_B1 SINE B4 -13 211 38 1 1519 848 241 107 40 chr1 122475180 122475452 -74719980 - B4A SINE B4 0 292 3 1 1519 467 360 46 28 chr1 122475470 122475753 -74719679 + L1ME1 LINE L1 4859 5146 -1000 1 1519 239 174 35 11 chr1 122475780 122475867 -74719565 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1519 224 245 19 0 chr1 122475869 122475922 -74719510 + ID4 SINE ID 30 83 0 1 1519 2972 293 75 31 chr1 122475945 122477120 -74718312 - Lx8 LINE L1 0 7473 6247 1 1519 888 181 0 7 chr1 122477129 122477279 -74718153 + B1_Mur4 SINE Alu 1 149 -1 1 1519 552 30 0 0 chr1 122477279 122477345 -74718087 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1519 363 227 0 0 chr1 122477354 122477420 -74718012 + ID_B1 SINE B4 153 218 -6 1 1519 285 288 42 24 chr1 122477458 122477636 -74717796 + L1ME1 LINE L1 5817 5997 -182 1 1519 868 311 131 79 chr1 122477986 122478597 -74716835 + RMER13A LTR ERVK 1 643 -217 1 1519 1091 61 55 6 chr1 122479058 122479223 -74716209 + L1_Mus3 LINE L1 6466 6638 0 1 1519 1071 276 32 25 chr1 122479282 122479561 -74715871 + B4 SINE B4 10 290 -2 1 1519 585 178 0 0 chr1 122479593 122479711 -74715721 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 1 1519 591 262 42 42 chr1 122479996 122480163 -74715269 + B4 SINE B4 125 291 -1 1 1519 386 255 18 36 chr1 122480349 122480459 -74714973 + PB1D10 SINE Alu 1 108 -9 1 1519 213 268 0 0 chr1 122480460 122480501 -74714931 + polypurine Low_complexity Low_complexity 4 44 0 1 1519 1626 198 69 20 chr1 122480501 122480847 -74714585 + MTEa LTR MaLR 4 366 -13 1 1519 423 0 0 0 chr1 122481014 122481061 -74714371 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1519 402 221 0 13 chr1 122481072 122481150 -74714282 - RSINE1 SINE B4 -85 80 4 1 1519 603 248 64 19 chr1 122481307 122481463 -74713969 + B3A SINE B2 1 163 -35 1 1519 238 158 48 84 chr1 122481712 122481795 -74713637 - B2_Mm1t SINE B2 -9 184 105 1 1519 348 161 0 0 chr1 122481795 122481857 -74713575 + CT-rich Low_complexity Low_complexity 1 62 0 1 1519 2326 246 55 7 chr1 122481865 122482425 -74713007 - Lx6 LINE L1 -49 7411 6825 1 1519 807 50 33 0 chr1 122482450 122482570 -74712862 + (TCTCCC)n Simple_repeat Simple_repeat 3 126 0 1 1519 285 193 0 0 chr1 122482571 122482628 -74712804 - Lx6 LINE L1 -727 6733 6677 1 1519 887 154 7 0 chr1 122482819 122482955 -74712477 + B1_Mur4 SINE Alu 13 149 -1 1 1519 752 318 5 27 chr1 122483417 122483640 -74711792 + ID_B1 SINE B4 1 218 -6 1 1519 395 299 51 6 chr1 122483630 122483805 -74711627 - MER33 DNA MER1_type -6 318 136 1 1519 429 54 0 0 chr1 122483805 122483861 -74711571 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1519 938 267 80 16 chr1 122483862 122484113 -74711319 - B4 SINE B4 -23 269 3 1 1519 192 77 0 0 chr1 122484160 122484186 -74711246 + (C)n Simple_repeat Simple_repeat 1 26 0 1 1519 246 330 136 0 chr1 122484646 122484734 -74710698 + B1F1 SINE Alu 1 100 -49 1 1519 235 261 46 0 chr1 122484882 122484947 -74710485 + ID_B1 SINE B4 157 224 0 1 1519 867 206 161 0 chr1 122485552 122485732 -74709700 + B3 SINE B2 2 210 -6 1 1519 396 237 71 10 chr1 122485791 122485889 -74709543 + B1_Mur2 SINE Alu 23 126 -23 1 1519 762 279 18 18 chr1 122485958 122486177 -74709255 + ID_B1 SINE B4 3 221 -3 1 1519 634 261 8 0 chr1 122486186 122486316 -74709116 + B1_Mur1 SINE Alu 12 142 -7 1 1519 420 20 0 0 chr1 122486321 122486370 -74709062 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 1 1519 215 245 9 26 chr1 122486371 122486484 -74708948 + GA-rich Low_complexity Low_complexity 3 113 0 1 1519 1224 101 0 0 chr1 122486830 122487008 -74708424 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 1 1519 344 21 42 0 chr1 122487008 122487056 -74708376 + (GGGAA)n Simple_repeat Simple_repeat 4 53 0 1 1519 510 17 0 0 chr1 122488338 122488397 -74707035 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1519 405 0 0 0 chr1 122488397 122488441 -74706991 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1519 420 217 271 0 chr1 122490710 122490839 -74704593 + B3A SINE B2 1 164 -34 1 1519 238 287 95 38 chr1 122490984 122491089 -74704343 - MIR3 SINE MIR -17 191 81 1 1519 25 0 0 0 chr1 122493395 122493420 -74702012 + AT_rich Low_complexity Low_complexity 1 25 0 1 1519 333 0 0 0 chr1 122494245 122494282 -74701150 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1519 26 0 0 0 chr1 122496770 122496796 -74698636 + GC_rich Low_complexity Low_complexity 1 26 0 1 1519 468 0 0 0 chr1 122498389 122498441 -74696991 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1519 266 106 21 0 chr1 122498441 122498488 -74696944 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1519 220 250 0 0 chr1 122499211 122499255 -74696177 + T-rich Low_complexity Low_complexity 1 44 0 1 1519 202 56 56 0 chr1 122499306 122499342 -74696090 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1519 35 41 0 0 chr1 122499557 122499606 -74695826 + GC_rich Low_complexity Low_complexity 1 49 0 1 1519 252 59 0 0 chr1 122499837 122499871 -74695561 + (CCG)n Simple_repeat Simple_repeat 3 36 0 1 1519 270 194 0 0 chr1 122500225 122500292 -74695140 + (CGG)n Simple_repeat Simple_repeat 1 67 0 1 1519 459 0 0 0 chr1 122502845 122502896 -74692536 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1519 243 0 0 0 chr1 122502896 122502922 -74692510 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1519 223 288 0 0 chr1 122503383 122503442 -74691990 + C-rich Low_complexity Low_complexity 1 59 0 4 1519 222 105 0 0 chr1 122504157 122504195 -74691237 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1519 360 0 0 0 chr1 122504929 122504969 -74690463 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1519 749 214 0 41 chr1 122508003 122508149 -74687283 + B1_Mur1 SINE Alu 8 147 -2 7 1519 23 0 0 0 chr1 122508154 122508177 -74687255 + AT_rich Low_complexity Low_complexity 1 23 0 8 1519 291 121 0 0 chr1 122513556 122513614 -74681818 + (T)n Simple_repeat Simple_repeat 1 58 0 9 1519 631 277 60 55 chr1 122513614 122513797 -74681635 + B4 SINE B4 91 274 -18 1 1519 328 203 26 26 chr1 122514038 122514114 -74681318 + RSINE1 SINE B4 21 96 -69 1 1519 676 288 60 5 chr1 122514926 122515125 -74680307 + ID_B1 SINE B4 2 211 -13 1 1519 234 0 0 0 chr1 122515126 122515152 -74680280 + (CTAA)n Simple_repeat Simple_repeat 2 27 0 1 1519 879 148 35 7 chr1 122515509 122515652 -74679780 + B1_Mur2 SINE Alu 2 148 -1 1 1519 245 264 27 38 chr1 122516063 122516189 -74679243 - ID4 SINE ID -27 125 2 1 1519 386 241 12 12 chr1 122516214 122516298 -74679134 + B4 SINE B4 1 84 -208 1 1519 578 304 15 77 chr1 122516326 122516522 -74678910 + B4 SINE B4 82 265 -27 1 1519 351 0 0 0 chr1 122516526 122516565 -74678867 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1519 790 239 57 96 chr1 122516966 122517267 -74678165 + B4A SINE B4 4 292 0 1 1519 189 196 0 0 chr1 122517315 122517361 -74678071 + (CATA)n Simple_repeat Simple_repeat 4 49 0 1 1519 470 61 15 0 chr1 122517414 122517480 -74677952 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 1519 495 0 0 0 chr1 122517997 122518052 -74677380 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1519 21 36 0 0 chr1 122518362 122518390 -74677042 + AT_rich Low_complexity Low_complexity 1 28 0 2 1519 43 20 0 0 chr1 122520009 122520059 -74675373 + AT_rich Low_complexity Low_complexity 1 50 0 2 1519 24 0 0 0 chr1 122520406 122520430 -74675002 + AT_rich Low_complexity Low_complexity 1 24 0 2 1519 256 299 15 0 chr1 122521141 122521208 -74674224 + GA-rich Low_complexity Low_complexity 2 69 0 2 1519 551 15 15 0 chr1 122521209 122521277 -74674155 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1519 255 103 0 0 chr1 122521670 122521709 -74673723 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 2 1519 528 255 27 27 chr1 122522795 122522944 -74672488 - RSINE1 SINE B4 -14 151 3 2 1519 297 306 230 28 chr1 122523179 122523357 -74672075 + ID_B1 SINE B4 7 220 -4 2 1519 459 0 0 0 chr1 122524232 122524283 -74671149 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 3 1519 774 183 30 0 chr1 122524283 122524414 -74671018 - B1_Mus2 SINE Alu -12 135 1 3 1519 508 289 24 59 chr1 122524617 122524786 -74670646 - RSINE1 SINE B4 -2 163 1 3 1519 638 266 102 37 chr1 122524815 122525011 -74670421 + B4A SINE B4 2 216 -76 3 1519 221 0 0 33 chr1 122525011 122525041 -74670391 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1519 638 266 102 37 chr1 122525041 122525059 -74670373 + B4A SINE B4 217 230 -62 3 1519 283 326 104 22 chr1 122525238 122525420 -74670012 + MARNA DNA Mariner 203 399 -187 3 1519 300 325 57 49 chr1 122525764 122525887 -74669545 - B4 SINE B4 -164 128 5 3 1519 925 245 90 8 chr1 122526034 122526289 -74669143 + B4A SINE B4 5 280 -12 3 1519 1170 86 0 0 chr1 122526295 122526741 -74668691 + (CA)n Simple_repeat Simple_repeat 1 446 0 3 1519 596 234 187 103 chr1 122527154 122527502 -74667930 - MTE2a LTR MaLR 0 379 3 3 1519 251 333 38 9 chr1 122527879 122527985 -74667447 + Charlie19a DNA Charlie 213 321 -65 4 1519 402 85 0 0 chr1 122528752 122528811 -74666621 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1519 620 282 218 9 chr1 122528818 122529043 -74666389 - B4A SINE B4 -20 272 1 4 1519 301 314 49 8 chr1 122529594 122529716 -74665716 + MIRb SINE MIR 87 213 -55 4 1519 693 219 27 27 chr1 122529782 122529932 -74665500 - B3A SINE B2 0 198 49 4 1519 740 222 87 19 chr1 122529983 122530190 -74665242 - ID_B1 SINE B4 -2 222 2 4 1519 949 116 0 52 chr1 122530629 122530783 -74664649 - B1_Mus1 SINE Alu 0 148 3 4 1519 205 254 18 0 chr1 122531147 122531202 -74664230 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1519 190 143 0 0 chr1 122531542 122531570 -74663862 + MIR SINE MIR 113 140 -68 4 1519 198 118 0 0 chr1 122531780 122531814 -74663618 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1519 594 0 0 0 chr1 122531828 122531894 -74663538 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1519 861 115 0 0 chr1 122531919 122532041 -74663391 - B1_Mus1 SINE Alu -17 131 10 5 1519 752 281 28 0 chr1 122532038 122532216 -74663216 - B4A SINE B4 -64 228 46 5 1519 265 266 96 0 chr1 122532810 122532904 -74662528 - MIR SINE MIR -44 218 116 5 1519 828 124 0 0 chr1 122533463 122533600 -74661832 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 5 1519 289 229 43 0 chr1 122533601 122533671 -74661761 - BC1_Mm scRNA scRNA -79 73 1 5 1519 234 0 0 0 chr1 122533687 122533713 -74661719 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1519 793 271 113 4 chr1 122533737 122533993 -74661439 - B4 SINE B4 -8 284 1 5 1519 222 237 0 0 chr1 122534628 122534704 -74660728 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 1519 287 260 0 14 chr1 122534710 122534784 -74660648 - B4A SINE B4 -4 288 216 5 1519 399 308 150 88 chr1 122534819 122535093 -74660339 - B4 SINE B4 0 292 2 6 1519 787 230 146 10 chr1 122535093 122535295 -74660137 - B4A SINE B4 -62 230 1 5 1519 534 171 0 0 chr1 122535575 122535698 -74659734 + (CA)n Simple_repeat Simple_repeat 1 123 0 6 1519 297 0 0 0 chr1 122535698 122535731 -74659701 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1519 496 246 168 8 chr1 122535993 122536124 -74659308 + RSINE1 SINE B4 1 152 -13 6 1519 308 269 117 32 chr1 122536835 122537023 -74658409 + MIR SINE MIR 25 228 -34 6 1519 247 245 0 0 chr1 122537073 122537122 -74658310 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1519 766 280 24 156 chr1 122537131 122537332 -74658100 - B4 SINE B4 0 292 106 6 1519 530 0 31 0 chr1 122537332 122537397 -74658035 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 1519 766 280 24 156 chr1 122537397 122537529 -74657903 - B4 SINE B4 -187 105 3 6 1519 216 209 23 0 chr1 122537538 122537581 -74657851 + CT-rich Low_complexity Low_complexity 3 46 0 6 1519 581 241 224 27 chr1 122537923 122538115 -74657317 + B4A SINE B4 1 230 -62 6 1519 2552 126 49 17 chr1 122538115 122538526 -74656906 + Lx4B LINE L1 6631 7054 -4 7 1519 330 26 0 0 chr1 122538633 122538672 -74656760 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1519 549 0 0 0 chr1 122538672 122538732 -74656700 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1519 692 234 51 37 chr1 122539186 122539403 -74656029 + ID_B1 SINE B4 1 220 -4 7 1519 222 37 0 0 chr1 122539551 122539578 -74655854 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1519 365 322 54 62 chr1 122539578 122539696 -74655736 - RSINE1 SINE B4 -9 156 38 7 1519 370 288 128 11 chr1 122542240 122542419 -74653013 + MIRb SINE MIR 2 201 -67 7 1519 791 261 22 0 chr1 122544423 122544603 -74650829 - ID_B1 SINE B4 -16 208 25 7 1519 233 57 0 28 chr1 122544945 122544981 -74650451 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1519 378 0 0 0 chr1 122545000 122545042 -74650390 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 1519 208 214 0 0 chr1 122545147 122545189 -74650243 + CT-rich Low_complexity Low_complexity 4 45 0 8 1519 576 0 0 0 chr1 122545226 122545290 -74650142 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 8 1519 670 281 19 7 chr1 122545293 122545447 -74649985 - RSINE1 SINE B4 -8 157 2 8 1519 796 274 15 0 chr1 122545447 122545634 -74649798 - B4A SINE B4 -62 230 41 8 1519 232 397 0 0 chr1 122545822 122545890 -74649542 - RMER30 DNA MER1_type -1 201 134 8 1519 432 0 0 0 chr1 122545891 122545939 -74649493 + (TTA)n Simple_repeat Simple_repeat 2 49 0 8 1519 303 28 0 0 chr1 122545994 122546030 -74649402 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1519 403 244 12 0 chr1 122546035 122546117 -74649315 - RSINE1 SINE B4 -40 125 43 8 1519 287 234 0 15 chr1 122546132 122546197 -74649235 - RMER30 DNA MER1_type -134 68 5 8 1519 685 294 64 46 chr1 122547143 122547425 -74648007 + B4 SINE B4 2 288 -4 8 1519 500 30 15 0 chr1 122547468 122547534 -74647898 + (CTAA)n Simple_repeat Simple_repeat 3 69 0 8 1519 373 279 0 63 chr1 122547574 122547685 -74647747 - PB1D10 SINE Alu -11 106 3 9 1519 569 133 46 37 chr1 122547707 122547816 -74647616 - B1_Mus1 SINE Alu 0 148 39 9 1519 254 213 48 32 chr1 122547764 122547827 -74647605 - 4.5SRNA scRNA scRNA -8 86 23 9 1519 510 31 0 0 chr1 122547961 122548025 -74647407 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1519 261 298 128 0 chr1 122548056 122548150 -74647282 + B1F1 SINE Alu 35 140 -9 9 1519 681 259 73 0 chr1 122548162 122548314 -74647118 + B3A SINE B2 3 165 -51 9 1519 267 103 0 0 chr1 122548314 122548353 -74647079 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1519 555 304 70 25 chr1 122548353 122548399 -74647033 + B3 SINE B2 166 210 -6 9 1519 542 75 0 12 chr1 122548526 122548607 -74646825 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1519 1640 272 112 35 chr1 122548607 122549320 -74646112 - Charlie7 DNA MER1_type -262 2350 1583 9 1519 508 188 16 33 chr1 122549324 122549506 -74645926 + CT-rich Low_complexity Low_complexity 2 180 0 9 1519 762 240 16 74 chr1 122549510 122549699 -74645733 - ID_B1 SINE B4 0 224 47 1 1519 343 218 103 0 chr1 122549712 122549799 -74645633 + MTEa LTR MaLR 282 377 -2 1 1519 843 93 0 0 chr1 122549848 122549988 -74645444 + (GA)n Simple_repeat Simple_repeat 2 141 0 1 1519 633 310 13 91 chr1 122549999 122550297 -74645135 - B4 SINE B4 -17 275 1 1 1519 321 26 0 0 chr1 122550645 122550683 -74644749 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1519 872 253 103 37 chr1 122550706 122550911 -74644521 + B4 SINE B4 4 231 -61 1 1519 2449 160 19 2 chr1 122550911 122551325 -74644107 + MTC LTR MaLR 1 421 0 1 1519 872 253 103 37 chr1 122551325 122551390 -74644042 + B4 SINE B4 232 292 0 1 1519 452 245 78 65 chr1 122551407 122551560 -74643872 - Charlie12 DNA MER1_type -2718 155 1 1 1519 529 267 52 30 chr1 122551582 122551762 -74643670 + MER63A DNA AcHobo 21 209 -1 1 189 1176 235 39 99 chr1 122552280 122552712 -74642720 - MTE2a LTR MaLR -13 406 1 1 1520 216 67 0 0 chr1 122553050 122553080 -74642352 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1520 414 0 0 0 chr1 122553190 122553236 -74642196 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1520 238 26 0 49 chr1 122554398 122554439 -74640993 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1520 369 0 0 0 chr1 122554643 122554684 -74640748 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1520 407 63 16 0 chr1 122554684 122554746 -74640686 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1520 888 69 28 33 chr1 122554778 122554958 -74640474 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1520 585 238 76 7 chr1 122554981 122555125 -74640307 - RSINE1 SINE B4 0 165 12 1 1520 180 0 0 0 chr1 122555233 122555253 -74640179 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1520 725 229 181 22 chr1 122555259 122555580 -74639852 - Lx7 LINE L1 -4 7692 7321 1 1520 531 233 85 0 chr1 122555595 122555724 -74639708 - B1_Mur2 SINE Alu -8 141 2 1 1520 547 264 10 94 chr1 122555724 122555925 -74639507 - B4 SINE B4 -108 184 1 1 1520 182 91 30 0 chr1 122556916 122556949 -74638483 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1520 612 179 9 9 chr1 122556989 122557102 -74638330 + PB1D9 SINE Alu 1 113 -7 1 1520 869 286 14 0 chr1 122557371 122557588 -74637844 + ID_B1 SINE B4 2 221 -3 1 1520 233 318 16 0 chr1 122557670 122557733 -74637699 - MLT1A0 LTR MaLR -179 186 123 1 1520 249 336 48 0 chr1 122557735 122557839 -74637593 - PB1D9 SINE Alu 0 120 12 1 1520 805 234 6 0 chr1 122557895 122558053 -74637379 - MTEa LTR MaLR -13 366 208 1 1520 406 335 85 0 chr1 122558093 122558269 -74637163 - MIRc SINE MIR -74 194 4 1 1520 386 221 500 3 chr1 122558325 122558483 -74636949 + B4A SINE B4 39 269 -23 1 1520 330 26 0 0 chr1 122558485 122558524 -74636908 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1520 517 242 125 0 chr1 122558554 122558674 -74636758 + ID_B1 SINE B4 90 224 0 1 1520 204 125 0 0 chr1 122558676 122558708 -74636724 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 1 1520 564 15 0 0 chr1 122558751 122558816 -74636616 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1520 189 147 0 0 chr1 122559053 122559087 -74636345 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1520 537 283 10 62 chr1 122559097 122559130 -74636302 - B3A SINE B2 -16 182 150 1 1520 450 0 0 0 chr1 122559130 122559180 -74636252 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1520 537 283 10 62 chr1 122559180 122559338 -74636094 - B3A SINE B2 -49 149 1 1 1520 953 243 19 0 chr1 122559347 122559561 -74635871 - ID_B1 SINE B4 -2 222 5 1 1520 550 265 82 24 chr1 122559584 122559754 -74635678 - B3 SINE B2 0 216 37 1 1520 215 125 25 0 chr1 122560193 122560233 -74635199 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 1 1520 21 57 0 0 chr1 122560259 122560294 -74635138 + AT_rich Low_complexity Low_complexity 1 35 0 1 1520 217 253 137 69 chr1 122560566 122560668 -74634764 + MIRm SINE MIR 46 154 -122 1 1520 552 209 46 141 chr1 122560891 122561065 -74634367 + MTEb LTR MaLR 215 379 0 1 1520 1055 287 118 6 chr1 122561256 122561603 -74633829 - MTD LTR MaLR -14 405 20 1 1520 654 296 119 38 chr1 122561729 122562057 -74633375 + ORR1D2 LTR MaLR 2 379 0 1 1520 481 260 0 0 chr1 122562411 122562511 -74632921 + RSINE1 SINE B4 12 111 -54 1 1520 1158 68 0 7 chr1 122562675 122562812 -74632620 + B1_Mus2 SINE Alu 1 137 -10 1 1520 396 0 0 0 chr1 122562812 122562856 -74632576 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1520 297 341 34 0 chr1 122562957 122563045 -74632387 - MER117 DNA MER1_type 0 197 107 1 1520 612 38 0 0 chr1 122563362 122563441 -74631991 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1520 988 314 10 10 chr1 122563446 122563736 -74631696 - B4 SINE B4 -2 290 1 1 1520 192 400 38 0 chr1 122563771 122563876 -74631556 - MIR SINE MIR -67 141 33 1 1520 200 233 0 0 chr1 122564342 122564385 -74631047 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 1 1520 1146 172 33 14 chr1 122564476 122564688 -74630744 - B3 SINE B2 0 216 1 1 1520 296 290 68 29 chr1 122564821 122564924 -74630508 - PB1D10 SINE Alu -10 107 1 1 1520 358 253 93 88 chr1 122565202 122565242 -74630190 - B2_Mm1a SINE B2 -1 192 160 1 1520 297 75 0 0 chr1 122565242 122565282 -74630150 + (TATG)n Simple_repeat Simple_repeat 4 43 0 1 1520 510 216 50 42 chr1 122565282 122565424 -74630008 - B3A SINE B2 -34 159 9 1 1520 198 0 0 0 chr1 122565442 122565464 -74629968 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1520 662 275 29 14 chr1 122565727 122565867 -74629565 + RSINE1 SINE B4 2 143 -22 1 1520 653 226 45 0 chr1 122565868 122566001 -74629431 - B4A SINE B4 -153 139 1 1 1520 706 254 25 36 chr1 122566697 122566893 -74628539 + ID_B1 SINE B4 7 200 -24 1 1520 228 196 77 19 chr1 122566875 122566927 -74628505 + RSINE1 SINE B4 16 70 -95 1 1520 548 174 22 0 chr1 122567010 122567102 -74628330 + B3A SINE B2 1 94 -104 1 1520 920 159 0 0 chr1 122567167 122567312 -74628120 - B1_Mur4 SINE Alu 0 150 6 1 1520 385 286 89 28 chr1 122567349 122567529 -74627903 + L1MC2 LINE L1 6109 6299 -45 1 1520 1480 78 5 0 chr1 122567574 122567766 -74627666 + B2_Mm1a SINE B2 1 193 0 1 1520 195 129 0 0 chr1 122568084 122568115 -74627317 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1520 1553 212 35 48 chr1 122568932 122568966 -74626466 - MTE2b LTR MaLR -8 371 343 1 1520 1489 225 90 17 chr1 122568966 122569310 -74626122 - ORR1D2 LTR MaLR 0 370 2 1 1520 1553 212 35 48 chr1 122569310 122569651 -74625781 - MTE2b LTR MaLR -37 342 1 1 1520 232 232 189 44 chr1 122569685 122569775 -74625657 - MER102a DNA MER1_type -9 321 219 1 1520 253 253 177 10 chr1 122569783 122569879 -74625553 + PB1D7 SINE Alu 1 112 -8 1 1520 855 288 34 44 chr1 122570239 122570533 -74624899 + B4A SINE B4 1 291 -1 1 1520 226 274 188 20 chr1 122570737 122570886 -74624546 + MIRb SINE MIR 72 245 -23 1 1520 234 0 0 0 chr1 122571229 122571255 -74624177 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1520 280 218 55 0 chr1 122571256 122571311 -74624121 + RSINE1 SINE B4 70 127 -38 1 1520 332 283 18 28 chr1 122571339 122571448 -74623984 + CT-rich Low_complexity Low_complexity 2 109 0 1 1520 202 359 59 101 chr1 122571492 122571848 -74623584 - L2b LINE L2 -5 3370 3030 1 1520 251 242 16 0 chr1 122572017 122572079 -74623353 - B1F SINE Alu -7 142 80 1 1520 3299 48 5 2 chr1 122572144 122572539 -74622893 - MTA_Mm LTR MaLR 0 396 1 1 1520 217 306 0 0 chr1 122572540 122572589 -74622843 + (CAT)n Simple_repeat Simple_repeat 3 51 0 1 1520 381 327 12 56 chr1 122572589 122572751 -74622681 - RSINE1 SINE B4 -4 161 7 1 1520 400 296 80 0 chr1 122572730 122572855 -74622577 - B4 SINE B4 -155 137 3 1 1520 1239 254 32 60 chr1 122573558 122573927 -74621505 + ORR1E LTR MaLR 1 359 0 1 1520 618 224 12 0 chr1 122573978 122574406 -74621026 + (TG)n Simple_repeat Simple_repeat 1 433 0 1 1520 306 159 238 0 chr1 122574412 122574475 -74620957 - B4 SINE B4 0 292 215 1 1520 1300 82 0 30 chr1 122574570 122574770 -74620662 - Lx LINE L1 0 6654 6461 1 1520 510 96 0 0 chr1 122574786 122574859 -74620573 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1 1520 376 301 72 46 chr1 122574866 122575019 -74620413 - RSINE1 SINE B4 -6 159 3 1 1520 418 268 215 12 chr1 122575019 122575206 -74620226 - B4 SINE B4 -61 231 4 1 1520 651 13 0 0 chr1 122575264 122575340 -74620092 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1520 912 228 41 0 chr1 122575755 122575952 -74619480 + URR1A DNA MER1_type 22 226 0 1 1520 204 167 0 0 chr1 122575957 122576005 -74619427 + GA-rich Low_complexity Low_complexity 1 48 0 1 1520 737 271 64 20 chr1 122576023 122576226 -74619206 - B4 SINE B4 -14 278 67 1 1520 995 224 4 35 chr1 122576377 122576604 -74618828 + ID_B1 SINE B4 1 220 -4 1 1520 897 106 12 18 chr1 122576910 122577073 -74618359 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 1 1520 1020 248 0 19 chr1 122577074 122577288 -74618144 - ID_B1 SINE B4 -6 218 9 1 1520 936 279 0 38 chr1 122577888 122578100 -74617332 - B4 SINE B4 0 292 89 1 1520 396 0 0 0 chr1 122578167 122578211 -74617221 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1520 462 306 26 46 chr1 122578211 122578362 -74617070 - RSINE1 SINE B4 -3 162 15 1 1520 495 307 16 8 chr1 122578436 122578564 -74616868 - RSINE1 SINE B4 -29 136 8 1 1520 765 255 71 39 chr1 122579639 122579921 -74615511 + B4A SINE B4 2 292 0 1 1520 463 214 0 58 chr1 122580358 122580462 -74614970 - B1_Mur2 SINE Alu -51 98 1 2 1520 921 263 17 83 chr1 122580490 122580780 -74614652 + B4 SINE B4 2 272 -20 2 1520 545 52 13 0 chr1 122580792 122580869 -74614563 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1520 293 320 11 0 chr1 122581200 122581291 -74614141 + ID4 SINE ID 6 96 -56 2 1520 485 292 144 29 chr1 122581366 122581539 -74613893 + B3A SINE B2 1 193 -5 2 1520 1001 270 0 118 chr1 122581801 122582124 -74613308 - B4 SINE B4 -6 286 2 2 1520 511 310 55 42 chr1 122582909 122583174 -74612258 + B4A SINE B4 1 292 0 2 1520 212 270 104 80 chr1 122584786 122584911 -74610521 + B4 SINE B4 3 130 -162 2 1520 423 0 0 0 chr1 122585374 122585421 -74610011 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1520 1215 36 0 0 chr1 122585423 122585562 -74609870 - B1_Mm SINE Alu -6 141 3 2 1520 697 280 63 0 chr1 122585603 122585810 -74609622 - ID_B1 SINE B4 -3 221 2 2 1520 1303 181 0 0 chr1 122586253 122586479 -74608953 - URR1A DNA MER1_type 0 226 1 2 1520 284 234 16 0 chr1 122586479 122586543 -74608889 + ORR1E LTR MaLR 35 99 -280 2 1520 1069 307 80 78 chr1 122586527 122587025 -74608407 + MT2A LTR ERVL 35 533 0 2 1520 505 222 34 0 chr1 122587243 122587360 -74608072 + RMER15 LTR ERVL 455 575 0 2 1520 297 174 130 65 chr1 122587867 122587959 -74607473 + Ricksha_c DNA MuDR 370 467 -1581 2 1520 306 301 104 50 chr1 122588006 122588188 -74607244 + ORR1E LTR MaLR 64 255 -104 2 1520 388 300 46 7 chr1 122588483 122588634 -74606798 - HAL1-2a_MD LINE L1 -508 2516 2360 2 1520 1068 229 198 15 chr1 122589894 122590222 -74605210 + MTD LTR MaLR 18 405 -14 2 1520 206 136 23 0 chr1 122590289 122590333 -74605099 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1520 443 277 163 39 chr1 122590392 122590595 -74604837 - B4A SINE B4 -64 228 1 2 1520 931 254 14 9 chr1 122590759 122590974 -74604458 - B3 SINE B2 0 216 1 2 1520 1306 255 98 21 chr1 122591297 122591685 -74603747 + MTD LTR MaLR 2 419 0 2 1520 1822 152 9 60 chr1 122591685 122591979 -74603453 - ORR1A3 LTR MaLR -49 277 1 2 1520 329 320 20 0 chr1 122592150 122592250 -74603182 - MTEb LTR MaLR 0 379 278 2 1520 420 320 12 49 chr1 122592354 122592701 -74602731 + GA-rich Low_complexity Low_complexity 1 334 0 2 1520 837 239 80 10 chr1 122592994 122593193 -74602239 - ID_B1 SINE B4 0 224 12 2 1520 767 286 69 22 chr1 122593519 122593794 -74601638 + B4A SINE B4 1 288 -4 2 1520 1328 198 85 37 chr1 122594070 122594422 -74601010 - ORR1D2 LTR MaLR -1 369 1 2 1520 615 295 7 7 chr1 122594448 122594598 -74600834 + RSINE1 SINE B4 16 165 0 2 1520 453 127 0 0 chr1 122594599 122594678 -74600754 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1520 182 191 21 0 chr1 122594685 122594732 -74600700 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 2 1520 223 122 20 20 chr1 122594767 122594817 -74600615 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1520 458 317 54 47 chr1 122594892 122595041 -74600391 + ID_B1 SINE B4 34 183 -41 2 1520 521 287 106 7 chr1 122596217 122596368 -74599064 - B4A SINE B4 0 292 127 2 1520 243 0 0 0 chr1 122596395 122596422 -74599010 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1520 449 320 57 74 chr1 122596461 122596576 -74598856 - B4A SINE B4 0 292 174 2 1520 1397 73 5 35 chr1 122596576 122596774 -74598658 + B2_Mm2 SINE B2 1 192 -3 2 1520 449 320 57 74 chr1 122596774 122596955 -74598477 - B4A SINE B4 -119 173 1 2 1520 412 298 131 31 chr1 122597336 122597558 -74597874 - L1MC LINE L1 -2109 5773 5530 2 1520 512 272 34 1 chr1 122597835 122597972 -74597460 - B4 SINE B4 -4 161 2 2 1520 931 244 18 50 chr1 122598255 122598475 -74596957 - ID_B1 SINE B4 0 224 12 2 1520 297 75 0 0 chr1 122599436 122599476 -74595956 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1520 480 349 8 0 chr1 122599478 122599610 -74595822 - B3A SINE B2 -26 172 40 2 1520 435 274 47 0 chr1 122599622 122599728 -74595704 + MTEa LTR MaLR 246 356 -23 2 1520 207 0 0 0 chr1 122599728 122599751 -74595681 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1520 575 377 49 23 chr1 122599934 122600197 -74595235 + B4A SINE B4 5 274 -18 2 1520 375 210 25 0 chr1 122600776 122600857 -74594575 - MTE2b LTR MaLR -16 363 281 2 1520 1497 225 72 36 chr1 122600853 122601213 -74594219 - MTE2a LTR MaLR -6 373 1 2 1520 761 250 158 0 chr1 122601246 122601430 -74594002 - MTE2b LTR MaLR -166 213 1 2 1520 1553 168 148 63 chr1 122601739 122602070 -74593362 + ORR1B2 LTR MaLR 1 359 -8 2 1520 280 240 43 96 chr1 122602111 122602226 -74593206 - ORR1C1 LTR MaLR -265 113 5 2 1520 460 290 52 26 chr1 122602261 122602452 -74592980 + B3 SINE B2 5 200 -16 2 1520 471 35 0 0 chr1 122602593 122602650 -74592782 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 2 1520 286 242 48 16 chr1 122602726 122602789 -74592643 - RSINE1 SINE B4 -87 78 14 2 1520 503 220 36 9 chr1 122602976 122603086 -74592346 + ID_B1 SINE B4 1 113 -111 2 1520 762 280 25 20 chr1 122603699 122603903 -74591529 + MTE2b LTR MaLR 1 205 -174 2 1520 615 244 8 8 chr1 122603909 122604037 -74591395 - RSINE1 SINE B4 -35 130 3 2 1520 228 125 60 40 chr1 122604129 122604179 -74591253 - Charlie4a DNA MER1_type -51 457 407 2 1520 290 316 29 58 chr1 122604216 122604320 -74591112 - MLT1B LTR MaLR -11 379 279 2 1520 946 207 186 0 chr1 122604525 122604762 -74590670 + B4 SINE B4 1 281 -11 2 1520 330 223 155 84 chr1 122605553 122605667 -74589765 - RMER5 LTR ERV1 -17 517 403 2 1520 180 0 0 0 chr1 122605667 122605687 -74589745 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 2 1520 330 223 155 84 chr1 122605687 122605714 -74589718 - RMER5 LTR ERV1 -132 402 367 2 1520 255 93 0 0 chr1 122605715 122605758 -74589674 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2 1520 711 289 21 26 chr1 122605760 122605952 -74589480 + B3A SINE B2 8 198 0 2 1520 1100 269 59 9 chr1 122605947 122606288 -74589144 - RMER5 LTR ERV1 -137 397 40 2 1520 1559 251 36 3 chr1 122606550 122606910 -74588522 + MTE2b LTR MaLR 1 372 -7 2 1520 518 261 244 0 chr1 122607223 122607403 -74588029 + ID_B1 SINE B4 1 224 0 2 1520 4155 93 4 2 chr1 122607693 122608254 -74587178 - L1_Mus4 LINE L1 -5 6631 6070 2 1520 557 92 0 0 chr1 122608257 122608333 -74587099 + B1_Mur4 SINE Alu 75 150 0 2 1520 721 240 16 11 chr1 122608357 122608542 -74586890 - B3A SINE B2 -10 188 3 2 1520 383 295 32 32 chr1 122608748 122608902 -74586530 + L1M5 LINE L1 5171 5324 -822 2 1520 438 257 56 42 chr1 122608907 122609049 -74586383 + B4 SINE B4 1 144 -148 2 1520 243 0 0 0 chr1 122609141 122609168 -74586264 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1520 850 265 90 126 chr1 122609205 122609596 -74585836 + ORR1E LTR MaLR 3 377 -2 2 1520 239 306 68 80 chr1 122609623 122609872 -74585560 + L1MB3 LINE L1 5360 5605 -575 2 1520 441 299 94 42 chr1 122609874 122610139 -74585293 + B4A SINE B4 2 280 -12 2 1520 309 242 66 0 chr1 122610213 122610304 -74585128 + L1MB3 LINE L1 5593 5689 -482 2 1520 475 271 14 14 chr1 122610351 122610497 -74584935 + L1MB3 LINE L1 6036 6181 -2 2 1520 185 94 0 30 chr1 122610503 122610536 -74584896 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1520 306 0 0 0 chr1 122610537 122610571 -74584861 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1520 858 242 11 0 chr1 122610585 122610763 -74584669 - B3A SINE B2 -18 180 1 2 1520 531 85 0 0 chr1 122610773 122610855 -74584577 + (TC)n Simple_repeat Simple_repeat 2 83 0 2 1520 619 307 69 65 chr1 122610904 122611151 -74584281 - B4 SINE B4 -18 274 27 2 1520 1354 238 36 42 chr1 122611928 122612288 -74583144 + MER121 Unknown Unknown 39 396 -16 2 1520 572 267 63 57 chr1 122612706 122612865 -74582567 + B4 SINE B4 2 161 -131 2 1520 192 314 81 75 chr1 122612881 122613067 -74582365 - L2c LINE L2 -177 3210 3024 2 1520 768 282 11 6 chr1 122613430 122613605 -74581827 - B3 SINE B2 -1 215 40 2 1520 295 285 42 34 chr1 122613591 122613718 -74581714 - MLT1A0 LTR MaLR -214 160 29 2 1520 1261 207 128 3 chr1 122613805 122614140 -74581292 - MTE2b LTR MaLR -2 377 1 2 1520 271 285 34 3 chr1 122614221 122614311 -74581121 - PB1D7 SINE Alu -9 108 16 2 1520 6155 227 32 19 chr1 122614440 122615732 -74579700 - Lx5 LINE L1 -1 7049 5741 2 1520 12033 137 23 48 chr1 122615737 122619013 -74576419 - L1_Mus3 LINE L1 -7 6631 3449 2 1520 1368 59 9 4 chr1 122619512 122619734 -74575698 + (TTCCC)n Simple_repeat Simple_repeat 1 222 0 2 1520 326 332 155 0 chr1 122619734 122619927 -74575505 - ID_B1 SINE B4 -1 223 1 2 1520 234 362 50 39 chr1 122620306 122620487 -74574945 + Charlie22a DNA MER1_type 8 190 -301 2 1520 683 249 84 12 chr1 122620899 122621066 -74574366 - ID_B1 SINE B4 -45 179 1 2 1520 945 280 9 9 chr1 122621460 122621669 -74573763 + ID_B1 SINE B4 4 213 -11 2 1520 450 36 0 0 chr1 122621669 122621725 -74573707 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 1520 26 0 0 0 chr1 122621949 122621975 -74573457 + AT_rich Low_complexity Low_complexity 1 26 0 2 1520 201 296 0 0 chr1 122621997 122622051 -74573381 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1520 392 306 91 47 chr1 122622067 122622341 -74573091 - B4A SINE B4 -4 288 3 2 1520 1014 236 72 19 chr1 122622787 122623051 -74572381 - B4 SINE B4 -14 278 1 2 1520 324 120 0 0 chr1 122623328 122623378 -74572054 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1520 402 276 18 39 chr1 122623617 122623828 -74571604 + CT-rich Low_complexity Low_complexity 1 206 0 2 1520 485 194 11 11 chr1 122623949 122624126 -74571306 + CT-rich Low_complexity Low_complexity 1 177 0 2 1520 269 226 64 28 chr1 122624645 122624786 -74570646 + (TATG)n Simple_repeat Simple_repeat 4 149 0 3 1520 186 133 0 0 chr1 122624804 122624834 -74570598 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 3 1520 260 325 216 76 chr1 122624859 122625109 -74570323 - B4A SINE B4 0 292 8 3 1520 626 260 0 0 chr1 122625116 122625243 -74570189 - ID_B1 SINE B4 -9 215 89 3 1520 423 0 0 0 chr1 122626186 122626233 -74569199 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1520 478 288 16 8 chr1 122626241 122626367 -74569065 - RSINE1 SINE B4 -33 132 6 3 1520 224 175 16 0 chr1 122626420 122626483 -74568949 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1520 1060 278 11 61 chr1 122626495 122626775 -74568657 - B4 SINE B4 -2 290 25 3 1520 289 280 9 61 chr1 122626821 122626935 -74568497 - RLTR25B LTR ERVK -480 548 441 3 1520 995 92 0 0 chr1 122626835 122626966 -74568466 - B1_Mus1 SINE Alu -8 140 10 3 1520 541 272 32 70 chr1 122626966 122627021 -74568411 - ID_B1 SINE B4 -8 216 38 3 1520 252 0 0 0 chr1 122627215 122627243 -74568189 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1520 296 273 28 21 chr1 122627337 122627469 -74567963 - RMER15 LTR ERVL -36 539 292 3 1520 708 259 41 0 chr1 122627788 122627958 -74567474 + B3A SINE B2 5 181 -17 3 1520 497 281 72 40 chr1 122628339 122628491 -74566941 - MTEb LTR MaLR -193 186 30 3 1520 290 298 54 76 chr1 122628599 122628784 -74566648 + MER20 DNA MER1_type 36 216 -3 3 1520 203 0 0 36 chr1 122629529 122629557 -74565875 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1520 197 365 40 40 chr1 122629719 122629819 -74565613 - L2c LINE L2 -70 3317 3218 3 1520 185 333 82 32 chr1 122630159 122630317 -74565115 - L2c LINE L2 -605 2814 2649 3 1520 720 284 25 45 chr1 122630626 122630869 -74564563 + RMER15 LTR ERVL 336 573 -2 3 1520 308 274 139 48 chr1 122631719 122631884 -74563548 - MER2 DNA MER2_type -136 209 30 3 1520 299 189 52 21 chr1 122631979 122632076 -74563356 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 3 1520 211 387 27 0 chr1 122632450 122632561 -74562871 + MIR SINE MIR 19 132 -76 3 1520 408 20 0 0 chr1 122633320 122633369 -74562063 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1520 1447 232 32 35 chr1 122633380 122633750 -74561682 - ORR1D2 LTR MaLR 0 370 2 3 1520 342 155 56 67 chr1 122633769 122633949 -74561483 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 1520 26 0 0 0 chr1 122634512 122634538 -74560894 + AT_rich Low_complexity Low_complexity 1 26 0 3 1520 2157 175 51 3 chr1 122634558 122634947 -74560485 + MTC LTR MaLR 14 421 0 3 1520 259 236 27 27 chr1 122635019 122635093 -74560339 + CT-rich Low_complexity Low_complexity 3 76 0 3 1520 300 245 146 48 chr1 122635274 122635377 -74560055 - PB1D10 SINE Alu 0 117 5 3 1520 453 66 0 0 chr1 122635652 122635713 -74559719 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1520 585 305 119 20 chr1 122635715 122635966 -74559466 - B4A SINE B4 -16 276 1 3 1520 853 280 43 50 chr1 122637009 122637291 -74558141 + B4A SINE B4 3 282 -10 3 1520 369 0 0 0 chr1 122637348 122637389 -74558043 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1520 828 269 9 35 chr1 122638557 122638784 -74556648 - ID_B1 SINE B4 -1 223 3 3 1520 246 314 44 82 chr1 122638784 122638919 -74556513 - MIRb SINE MIR -59 209 80 3 1520 582 266 12 64 chr1 122639223 122639396 -74556036 - RSINE1 SINE B4 0 165 2 3 1520 435 68 0 0 chr1 122639728 122639787 -74555645 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1520 379 231 0 0 chr1 122639791 122639856 -74555576 - RSINE1 SINE B4 -26 139 75 3 1520 297 51 0 0 chr1 122639970 122640009 -74555423 + (TTG)n Simple_repeat Simple_repeat 1 39 0 3 1520 890 287 5 0 chr1 122640009 122640218 -74555214 - ID_B1 SINE B4 -13 211 2 3 1520 399 21 0 0 chr1 122640937 122640985 -74554447 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1520 1064 265 39 49 chr1 122641000 122641286 -74554146 - B4 SINE B4 -9 283 1 3 1520 195 114 0 0 chr1 122642038 122642073 -74553359 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1520 258 105 0 0 chr1 122642185 122642223 -74553209 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 3 1520 478 133 22 0 chr1 122642351 122642441 -74552991 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 1520 906 311 14 43 chr1 122642477 122642759 -74552673 - B4A SINE B4 -14 278 5 3 1520 279 320 37 45 chr1 122642775 122642909 -74552523 - MIR SINE MIR -57 205 73 3 1520 444 276 260 17 chr1 122643011 122643188 -74552244 + ID_B1 SINE B4 5 224 0 3 1520 314 266 121 30 chr1 122643521 122643653 -74551779 + RSINE1 SINE B4 3 146 -19 3 1520 257 224 55 66 chr1 122643962 122644053 -74551379 - MTE2b LTR MaLR -17 362 273 3 1520 303 257 19 28 chr1 122644156 122644264 -74551168 + GA-rich Low_complexity Low_complexity 2 108 0 3 1520 252 300 62 0 chr1 122644395 122644475 -74550957 + ORR1E LTR MaLR 11 95 -264 3 1520 562 234 132 6 chr1 122644485 122644644 -74550788 + RMER30 DNA MER1_type 17 195 -7 3 1520 240 241 11 117 chr1 122644726 122644820 -74550612 - Charlie10 DNA MER1_type -1868 954 871 3 1520 361 253 252 7 chr1 122644928 122645079 -74550353 - B3A SINE B2 -10 188 1 3 1520 243 366 131 25 chr1 122645212 122645411 -74550021 - MLT1G3 LTR MaLR -82 513 294 3 1520 182 108 54 0 chr1 122645522 122645559 -74549873 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 1520 1025 243 20 53 chr1 122646617 122646917 -74548515 + B4 SINE B4 3 292 0 3 1520 381 260 110 0 chr1 122647761 122647861 -74547571 + PB1D10 SINE Alu 7 117 0 3 1520 318 26 0 0 chr1 122647867 122647906 -74547526 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 1520 922 132 20 27 chr1 122647921 122648069 -74547363 + B1_Mus2 SINE Alu 1 147 0 3 1520 468 302 72 50 chr1 122648195 122648243 -74547189 + B4 SINE B4 37 82 -210 3 1520 369 0 0 0 chr1 122648243 122648284 -74547148 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1520 513 0 0 0 chr1 122648284 122648340 -74547092 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1520 468 302 72 50 chr1 122648340 122648471 -74546961 + B4 SINE B4 83 220 -72 3 1520 254 95 24 0 chr1 122648484 122648526 -74546906 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 1520 995 152 0 6 chr1 122648527 122648706 -74546726 + GA-rich Low_complexity Low_complexity 3 180 0 3 1520 230 310 146 22 chr1 122648938 122649027 -74546405 - B4 SINE B4 -111 181 82 3 1520 607 194 389 103 chr1 122649047 122649324 -74546108 + MTE2b LTR MaLR 1 356 -23 3 1520 746 297 53 29 chr1 122650269 122650512 -74544920 + B4A SINE B4 1 249 -43 3 1520 245 281 92 15 chr1 122650539 122650604 -74544828 + B4A SINE B4 219 288 -4 3 1520 189 171 0 0 chr1 122650621 122650656 -74544776 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1520 775 204 0 7 chr1 122651526 122651674 -74543758 + B1F2 SINE Alu 1 147 -2 3 1520 225 94 0 0 chr1 122651901 122651933 -74543499 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1520 196 180 32 32 chr1 122652236 122652299 -74543133 + CT-rich Low_complexity Low_complexity 4 66 0 3 1520 324 305 103 34 chr1 122652306 122652452 -74542980 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1520 275 296 0 0 chr1 122652452 122652523 -74542909 + CT-rich Low_complexity Low_complexity 1 71 0 3 1520 482 192 0 37 chr1 122652561 122652657 -74542775 - PB1 SINE Alu -18 109 25 3 1520 1071 240 46 35 chr1 122652913 122653198 -74542234 - B4A SINE B4 0 292 5 3 1520 31 0 0 0 chr1 122653203 122653234 -74542198 + AT_rich Low_complexity Low_complexity 1 31 0 3 1520 282 269 105 9 chr1 122653268 122653373 -74542059 - PB1D10 SINE Alu -1 116 2 3 1520 273 128 0 0 chr1 122654391 122654438 -74540994 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1520 749 241 178 17 chr1 122654443 122654684 -74540748 - B4 SINE B4 -12 280 1 3 1520 330 26 0 0 chr1 122655188 122655227 -74540205 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1520 1106 259 13 0 chr1 122655233 122655472 -74539960 - B4A SINE B4 -18 274 33 3 1520 212 286 67 59 chr1 122655687 122655806 -74539626 + L2a LINE L2 3307 3426 0 3 1520 232 269 0 29 chr1 122655928 122655997 -74539435 + CT-rich Low_complexity Low_complexity 1 67 0 3 1520 470 226 54 0 chr1 122656000 122656093 -74539339 - PB1D10 SINE Alu -17 100 3 3 1520 222 294 59 0 chr1 122656187 122656255 -74539177 - MIRc SINE MIR -105 163 92 3 1520 24 0 0 0 chr1 122656560 122656584 -74538848 + AT_rich Low_complexity Low_complexity 1 24 0 3 1520 676 196 143 11 chr1 122656784 122656959 -74538473 - B3A SINE B2 0 198 1 3 1520 965 287 32 0 chr1 122657147 122657363 -74538069 - ID_B1 SINE B4 0 224 2 3 1520 1241 231 84 28 chr1 122658419 122658776 -74536656 - MTEa LTR MaLR -2 377 1 3 1520 667 248 89 0 chr1 122660455 122660612 -74534820 - Lx8 LINE L1 -729 6744 6574 3 1520 221 358 45 26 chr1 122661537 122661692 -74533740 + MIRc SINE MIR 109 266 -2 3 1520 1117 287 46 7 chr1 122661962 122662243 -74533189 + B4 SINE B4 1 292 0 3 1520 375 23 0 0 chr1 122662576 122662620 -74532812 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1520 904 293 71 50 chr1 122662636 122662916 -74532516 - B4 SINE B4 0 292 7 3 1520 269 282 179 21 chr1 122663366 122663511 -74531921 + MIRb SINE MIR 84 251 -17 3 1520 1249 287 50 95 chr1 122663577 122664112 -74531320 + Charlie8 DNA MER1_type 1 511 -1917 3 1520 285 300 29 0 chr1 122664112 122664182 -74531250 + Charlie8 DNA MER1_type 2357 2428 0 3 1520 849 257 72 14 chr1 122664285 122664561 -74530871 + B4A SINE B4 1 292 0 3 1520 294 211 26 26 chr1 122665143 122665216 -74530216 + RMER15 LTR ERVL 435 507 -68 3 1520 232 258 40 61 chr1 122665216 122665315 -74530117 - MTE2a LTR MaLR 0 379 283 4 1520 820 269 5 26 chr1 122665446 122665637 -74529795 - B4 SINE B4 -1 291 105 4 1520 473 332 82 46 chr1 122665723 122665918 -74529514 + B4 SINE B4 2 213 -79 4 1520 288 0 0 0 chr1 122665918 122665950 -74529482 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1520 473 332 82 46 chr1 122665950 122666035 -74529397 + B4 SINE B4 214 292 0 4 1520 508 299 63 31 chr1 122667405 122667564 -74527868 - RSINE1 SINE B4 0 165 2 4 1520 21 36 0 0 chr1 122667577 122667605 -74527827 + AT_rich Low_complexity Low_complexity 1 28 0 4 1520 306 0 0 0 chr1 122668175 122668209 -74527223 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 4 1520 494 310 97 0 chr1 122668730 122668875 -74526557 + RSINE1 SINE B4 3 161 -4 4 1520 354 80 0 0 chr1 122668891 122668941 -74526491 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1520 25 31 0 0 chr1 122668941 122668973 -74526459 + AT_rich Low_complexity Low_complexity 1 32 0 4 1520 802 265 20 0 chr1 122668986 122669190 -74526242 + B3 SINE B2 9 216 0 4 1520 492 301 19 58 chr1 122669318 122669526 -74525906 - RMER30 DNA MER1_type -1 201 2 4 1520 426 307 54 6 chr1 122669654 122669821 -74525611 + MLT1D LTR MaLR 3 177 -328 4 1520 422 276 84 61 chr1 122669837 122670098 -74525334 + MTE2a LTR MaLR 13 245 -134 4 1520 2882 153 70 6 chr1 122670200 122670727 -74524705 + RLTR31_Mm LTR ERVK 1 561 0 4 1520 989 297 55 33 chr1 122670727 122671009 -74524423 - ORR1D2 LTR MaLR -9 361 79 4 1520 2435 80 3 60 chr1 122671009 122671356 -74524076 + ORR1A2 LTR MaLR 1 327 0 4 1520 989 297 55 33 chr1 122671356 122671425 -74524007 - ORR1D2 LTR MaLR -292 78 1 4 1520 832 265 115 22 chr1 122671753 122672066 -74523366 + RMER5 LTR ERV1 193 534 0 4 1520 940 213 11 0 chr1 122672092 122672266 -74523166 - B3 SINE B2 -40 176 1 4 1520 504 0 0 0 chr1 122672392 122672448 -74522984 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 4 1520 675 201 17 0 chr1 122672448 122672622 -74522810 + CT-rich Low_complexity Low_complexity 2 178 0 4 1520 630 245 137 14 chr1 122672645 122672787 -74522645 - B4 SINE B4 -46 246 82 4 1520 279 0 0 0 chr1 122672787 122672818 -74522614 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1520 630 249 117 0 chr1 122672818 122672894 -74522538 - B4 SINE B4 -211 81 2 4 1520 354 282 15 9 chr1 122673061 122673210 -74522222 - L1M4 LINE L1 -933 5213 5063 4 1520 393 246 38 97 chr1 122673215 122673400 -74522032 - L1MB5 LINE L1 -121 6913 6740 4 1520 360 0 0 0 chr1 122673411 122673451 -74521981 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1520 252 325 56 40 chr1 122673503 122673628 -74521804 - B4 SINE B4 -14 278 152 4 1520 955 163 107 52 chr1 122673628 122673861 -74521571 + RMER1B Other Other 817 1062 -4 4 1520 719 265 60 21 chr1 122673862 122674097 -74521335 - MER2 DNA MER2_type -101 244 1 4 1520 710 246 45 135 chr1 122674099 122674498 -74520934 - L1MB5 LINE L1 -514 6524 6162 4 1520 790 306 31 15 chr1 122674510 122674769 -74520663 + B4A SINE B4 15 277 -15 4 1520 294 29 0 0 chr1 122674976 122675011 -74520421 + (TTA)n Simple_repeat Simple_repeat 1 35 0 4 1520 369 364 13 13 chr1 122675067 122675220 -74520212 + Lx8 LINE L1 6490 6642 -831 4 1520 268 160 20 0 chr1 122675220 122675270 -74520162 - RLTR11A LTR ERVK 0 528 478 4 1520 242 122 0 0 chr1 122675265 122675306 -74520126 - BGLII_A LTR ERVK -404 41 1 4 1520 454 283 59 25 chr1 122675310 122675572 -74519860 - L1MB5 LINE L1 -2616 4390 4124 4 1520 260 121 35 0 chr1 122675628 122675686 -74519746 + (TCTCTG)n Simple_repeat Simple_repeat 6 65 0 4 1520 282 323 113 31 chr1 122675865 122676350 -74519082 - L1MB5 LINE L1 -5149 2185 1661 4 1520 286 337 57 43 chr1 122676510 122676721 -74518711 - L1MB5 LINE L1 -5477 1427 1214 4 1520 238 308 0 0 chr1 122676878 122676943 -74518489 - L1MB5 LINE L1 -6037 971 907 4 1520 432 37 0 0 chr1 122676977 122677031 -74518401 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1520 207 0 0 0 chr1 122677127 122677150 -74518282 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 1520 294 337 0 46 chr1 122677185 122677272 -74518160 + RSINE1 SINE B4 83 165 0 4 1520 2404 231 94 65 chr1 122678074 122678478 -74516954 - RMER17B LTR ERVK -77 881 506 4 1520 1154 83 0 0 chr1 122678478 122678622 -74516810 - B1_Mus2 SINE Alu 0 147 4 4 1520 2404 229 97 67 chr1 122678622 122679109 -74516323 - RMER17B LTR ERVK -453 505 1 4 1520 264 155 52 0 chr1 122679175 122679233 -74516199 - MTD LTR MaLR 0 419 359 4 1520 388 291 50 25 chr1 122679266 122679467 -74515965 + RLTR12B LTR ERVK 296 501 -27 4 1520 536 305 200 15 chr1 122679550 122679810 -74515622 - MTD LTR MaLR -80 339 32 4 1520 26 0 0 0 chr1 122680069 122680095 -74515337 + AT_rich Low_complexity Low_complexity 1 26 0 4 1520 618 240 58 12 chr1 122680118 122680291 -74515141 - B3A SINE B2 -17 181 1 4 1520 705 194 108 46 chr1 122680857 122681052 -74514380 + B3 SINE B2 9 215 -1 4 1520 666 37 0 0 chr1 122681225 122681306 -74514126 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 4 1520 413 291 85 33 chr1 122681337 122681490 -74513942 + RSINE1 SINE B4 5 165 0 4 1520 327 49 0 0 chr1 122681492 122681533 -74513899 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 4 1520 448 217 224 37 chr1 122681874 122682088 -74513344 - B4 SINE B4 0 292 39 4 1520 384 238 0 0 chr1 122682817 122682897 -74512535 + ID4_ SINE ID 4 83 0 4 1520 385 39 0 0 chr1 122683068 122683119 -74512313 + B3 SINE B2 2 52 -164 4 1520 3989 62 24 76 chr1 122683119 122683262 -74512170 + L1_Mus1 LINE L1 6017 6159 -408 4 1520 791 61 202 0 chr1 122683262 122683376 -74512056 + B1_Mm SINE Alu 2 138 -9 4 23 3989 62 24 76 chr1 122683376 122683813 -74511619 + L1_Mus1 LINE L1 6160 6567 0 4 1521 209 83 28 0 chr1 122683831 122683867 -74511565 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 1521 818 313 88 24 chr1 122684211 122684712 -74510720 - MT2A LTR ERVL 0 533 1 4 1521 352 213 184 9 chr1 122685381 122685490 -74509942 - MTEa LTR MaLR -1 378 251 4 1521 601 251 10 107 chr1 122685592 122685788 -74509644 - B3 SINE B2 0 216 19 4 1521 684 306 71 20 chr1 122685919 122686216 -74509216 - L1MA6 LINE L1 0 6300 5989 4 1521 544 325 88 10 chr1 122686225 122686418 -74509014 - ID_B1 SINE B4 -16 208 1 4 1521 516 150 0 0 chr1 122686497 122686610 -74508822 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 4 1521 1657 131 21 82 chr1 122686714 122687054 -74508378 - ORR1A2 LTR MaLR -3 324 6 4 1521 525 305 137 27 chr1 122687310 122687573 -74507859 + B4A SINE B4 1 292 0 4 1521 956 257 67 64 chr1 122689106 122689464 -74505968 - ORR1E LTR MaLR 0 359 1 4 1521 642 254 143 38 chr1 122689494 122689731 -74505701 + B4 SINE B4 8 269 -23 4 1521 522 0 0 0 chr1 122689735 122689793 -74505639 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1521 454 273 78 88 chr1 122690023 122690379 -74505053 + MLT1B LTR MaLR 49 390 0 4 1521 706 280 131 33 chr1 122690540 122690784 -74504648 + B4 SINE B4 1 268 -24 4 1521 513 0 0 0 chr1 122690787 122690844 -74504588 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1521 348 150 0 0 chr1 122690844 122690924 -74504508 + (CAGAGA)n Simple_repeat Simple_repeat 3 82 0 4 1521 576 153 0 0 chr1 122690963 122691100 -74504332 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1521 1288 35 6 23 chr1 122691407 122691583 -74503849 + L1Md_F2 LINE L1 6410 6582 0 4 1521 288 352 19 0 chr1 122691778 122691883 -74503549 + CT-rich Low_complexity Low_complexity 4 110 0 4 1521 368 341 31 16 chr1 122693238 122693366 -74502066 + B4A SINE B4 1 130 -162 4 1521 498 17 0 0 chr1 122693371 122693430 -74502002 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1521 538 274 71 55 chr1 122693527 122693782 -74501650 - B4 SINE B4 -13 279 21 4 1521 1161 229 88 38 chr1 122694224 122694605 -74500827 + MTE2a LTR MaLR 10 417 -2 4 1521 331 291 107 99 chr1 122694915 122695148 -74500284 + B4A SINE B4 2 236 -56 4 1521 279 239 37 140 chr1 122696122 122696258 -74499174 - MTEb LTR MaLR -18 361 240 4 1521 224 172 62 0 chr1 122696440 122696504 -74498928 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1521 412 320 178 0 chr1 122696600 122696819 -74498613 - Lx8 LINE L1 -151 7322 7065 4 1521 1604 216 155 18 chr1 122696822 122697261 -74498171 - RLTR16 LTR ERVK -1 504 6 4 1521 373 212 24 0 chr1 122697274 122697359 -74498073 - Lx8 LINE L1 -420 7053 6967 4 1521 318 26 0 0 chr1 122697804 122697843 -74497589 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1521 715 284 22 0 chr1 122697845 122698028 -74497404 - B4A SINE B4 -33 259 73 4 1521 359 171 38 0 chr1 122698896 122699001 -74496431 + CT-rich Low_complexity Low_complexity 5 113 0 4 1521 514 306 81 51 chr1 122699050 122699345 -74496087 - B4 SINE B4 -10 282 2 4 1521 1646 236 90 16 chr1 122699397 122699896 -74495536 - Lx8 LINE L1 -2 7471 6936 4 1521 228 213 0 0 chr1 122700634 122700695 -74494737 + CT-rich Low_complexity Low_complexity 2 62 0 4 1521 545 326 37 29 chr1 122701540 122701786 -74493646 - B4A SINE B4 -2 290 43 4 1521 351 0 0 0 chr1 122701912 122701951 -74493481 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1521 372 275 40 12 chr1 122701991 122702164 -74493268 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1521 725 257 78 10 chr1 122702513 122702706 -74492726 + B4A SINE B4 2 207 -85 4 1521 1820 195 24 16 chr1 122702783 122703154 -74492278 - ORR1D1 LTR MaLR 0 374 1 4 1521 425 264 107 0 chr1 122704076 122704197 -74491235 + RSINE1 SINE B4 8 141 -24 4 1521 849 261 69 0 chr1 122704546 122704749 -74490683 + ID_B1 SINE B4 8 224 0 4 1521 324 161 0 0 chr1 122705183 122705264 -74490168 + GA-rich Low_complexity Low_complexity 2 82 0 4 1521 338 291 16 79 chr1 122705288 122705415 -74490017 - B4 SINE B4 -1 291 173 4 1521 450 217 233 0 chr1 122705642 122705771 -74489661 - B3A SINE B2 -1 197 39 4 1521 201 74 0 0 chr1 122705792 122705819 -74489613 + (TAA)n Simple_repeat Simple_repeat 3 29 0 4 1521 38 51 0 0 chr1 122705819 122705878 -74489554 + AT_rich Low_complexity Low_complexity 1 59 0 4 1521 306 0 0 0 chr1 122705883 122705917 -74489515 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 1521 303 308 0 0 chr1 122705917 122705995 -74489437 - B4 SINE B4 -214 78 1 4 1521 896 310 25 11 chr1 122706307 122706591 -74488841 - B4A SINE B4 0 292 5 4 1521 26 30 0 0 chr1 122707058 122707091 -74488341 + AT_rich Low_complexity Low_complexity 1 33 0 5 1521 545 226 150 0 chr1 122707104 122707237 -74488195 - B3A SINE B2 -6 192 40 5 1521 440 248 38 0 chr1 122707887 122707992 -74487440 + PB1D7 SINE Alu 11 119 -1 5 1521 495 248 106 7 chr1 122708020 122708162 -74487270 - MTEb LTR MaLR 0 379 224 5 1521 384 263 3 57 chr1 122708174 122708304 -74487128 + B3A SINE B2 104 216 0 5 1521 322 252 18 53 chr1 122708390 122708503 -74486929 - RMER4B LTR ERVK -9 576 468 5 1521 352 250 0 0 chr1 122708521 122708593 -74486839 - RMER4B LTR ERVK -171 414 343 5 1521 330 285 0 27 chr1 122708606 122708754 -74486678 + (CAG)n Simple_repeat Simple_repeat 1 144 0 5 1521 192 48 47 23 chr1 122708819 122708862 -74486570 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1521 410 148 112 11 chr1 122708863 122708952 -74486480 - RMER4B LTR ERVK -433 152 55 5 1521 182 265 35 113 chr1 122708990 122709105 -74486327 - MIRb SINE MIR -43 225 120 5 1521 1797 299 56 27 chr1 122709348 122710084 -74485348 - Lx8 LINE L1 -828 6645 5889 5 1521 841 281 14 68 chr1 122710133 122710427 -74485005 + B4 SINE B4 3 280 -12 5 1521 279 130 0 0 chr1 122710446 122710500 -74484932 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1521 1064 277 35 18 chr1 122711485 122711768 -74483664 + B4 SINE B4 2 289 -3 5 1521 324 83 0 0 chr1 122711793 122711841 -74483591 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1521 204 179 0 0 chr1 122713758 122713797 -74481635 + CT-rich Low_complexity Low_complexity 2 40 0 5 1521 372 292 106 11 chr1 122714332 122714512 -74480920 - MamRep434 DNA TcMar -126 300 104 5 1521 216 271 16 39 chr1 122714557 122714684 -74480748 - L4 LINE RTE -2 2027 1904 5 1521 506 297 78 145 chr1 122714939 122715388 -74480044 - MTD LTR MaLR 0 419 1 5 1521 280 300 25 45 chr1 122715411 122715568 -74479864 - Charlie7 DNA MER1_type -1 2611 2458 5 1521 14070 94 45 56 chr1 122715741 122717150 -74478282 - L1Md_F3 LINE L1 -14 6570 5106 5 1521 580 274 35 6 chr1 122717150 122717319 -74478113 + B3A SINE B2 25 198 0 5 1521 14070 94 45 56 chr1 122717319 122717331 -74478101 - L1Md_F3 LINE L1 -14 5105 5092 5 1521 249 33 0 0 chr1 122717331 122717361 -74478071 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 5 1521 14070 173 101 144 chr1 122717361 122720838 -74474594 - L1Md_F3 LINE L1 -786 5091 1686 5 1521 423 0 0 0 chr1 122720838 122720885 -74474547 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1521 14070 173 101 144 chr1 122720885 122721010 -74474422 - L1Md_F3 LINE L1 -4192 1685 1559 5 1521 248 229 35 24 chr1 122722161 122722246 -74473186 + MLT1D LTR MaLR 57 142 -363 5 1521 210 143 0 0 chr1 122722582 122722617 -74472815 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1521 911 239 24 14 chr1 122723153 122723365 -74472067 - ID_B1 SINE B4 -4 220 7 5 1521 522 83 0 0 chr1 122723440 122723512 -74471920 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1521 2841 231 47 20 chr1 122724116 122724899 -74470533 + RLTR40 LTR ERVK 1 804 -13 5 1521 458 379 41 35 chr1 122725136 122725426 -74470006 + B4A SINE B4 1 292 0 5 1521 456 161 0 0 chr1 122725794 122725875 -74469557 + (ATG)n Simple_repeat Simple_repeat 1 81 0 5 1521 240 238 0 0 chr1 122725965 122726028 -74469404 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1521 505 327 0 26 chr1 122726132 122726283 -74469149 - RSINE1 SINE B4 -17 148 2 5 1521 1183 249 43 18 chr1 122726923 122727205 -74468227 + B4 SINE B4 2 290 -2 5 1521 226 241 19 0 chr1 122727250 122727304 -74468128 + MLT1B LTR MaLR 45 99 -291 5 1521 243 298 34 34 chr1 122727411 122727529 -74467903 + MLT1B LTR MaLR 134 251 -139 5 1521 750 138 0 0 chr1 122729477 122729600 -74465832 + (TTCC)n Simple_repeat Simple_repeat 4 126 0 5 1521 485 221 80 52 chr1 122729645 122729801 -74465631 - B4 SINE B4 -128 164 19 5 1521 1329 303 123 29 chr1 122729884 122730198 -74465234 + Tigger6a DNA MER2_type 14 356 -727 5 1521 1614 205 71 6 chr1 122730198 122730551 -74464881 + MTE2a LTR MaLR 1 376 -3 5 1521 1329 303 123 29 chr1 122730551 122731051 -74464381 + Tigger6a DNA MER2_type 357 904 -179 5 1521 404 37 19 0 chr1 122731056 122731110 -74464322 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1521 1098 82 7 0 chr1 122731226 122731372 -74464060 - B1_Mm SINE Alu 0 147 1 5 1521 244 217 86 14 chr1 122731373 122731443 -74463989 - B4A SINE B4 -67 225 151 5 1521 417 252 7 84 chr1 122731509 122731652 -74463780 + Tigger6a DNA MER2_type 899 1030 -53 5 1521 615 242 45 79 chr1 122732340 122732542 -74462890 + B3A SINE B2 1 195 -3 5 1521 32 26 0 0 chr1 122732542 122732581 -74462851 + AT_rich Low_complexity Low_complexity 1 39 0 5 1521 207 161 58 17 chr1 122732591 122732711 -74462721 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 1521 41 21 0 0 chr1 122732711 122732759 -74462673 + AT_rich Low_complexity Low_complexity 1 48 0 5 1521 2468 160 17 17 chr1 122732760 122733224 -74462208 - L1_Mur2 LINE L1 -2720 3157 2694 5 1521 30 45 0 0 chr1 122733229 122733273 -74462159 + AT_rich Low_complexity Low_complexity 1 44 0 5 1521 674 253 15 64 chr1 122733348 122733551 -74461881 - B4A SINE B4 0 292 100 5 1521 868 281 60 49 chr1 122734884 122735169 -74460263 - B4 SINE B4 -4 288 1 5 1521 433 263 39 60 chr1 122735481 122735663 -74459769 - B3A SINE B2 -16 182 5 5 1521 986 216 33 28 chr1 122736142 122736356 -74459076 + B3 SINE B2 2 216 0 5 1521 534 31 0 0 chr1 122736370 122736434 -74458998 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 5 1521 587 272 38 6 chr1 122736434 122736593 -74458839 - RSINE1 SINE B4 0 165 2 5 1521 24 0 0 0 chr1 122737128 122737152 -74458280 + AT_rich Low_complexity Low_complexity 1 24 0 5 1521 228 268 23 58 chr1 122737513 122737600 -74457832 - MTEa LTR MaLR -6 373 290 5 1521 238 312 0 99 chr1 122737900 122738021 -74457411 - MLT1B LTR MaLR -144 246 138 5 1521 699 259 6 12 chr1 122738021 122738181 -74457251 + RSINE1 SINE B4 6 164 -1 5 1521 404 163 11 23 chr1 122738276 122738364 -74457068 - RMER5 LTR ERV1 -30 504 418 5 1521 424 188 28 3 chr1 122738363 122738447 -74456985 - RSINE1 SINE B4 -207 85 1 5 1521 244 173 58 0 chr1 122738448 122738500 -74456932 - ID_B1 SINE B4 -75 149 95 5 1521 558 0 0 0 chr1 122738558 122738620 -74456812 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1521 180 0 0 0 chr1 122739194 122739214 -74456218 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1521 515 348 104 9 chr1 122739826 122740038 -74455394 + B4A SINE B4 1 232 -60 5 1521 192 40 0 0 chr1 122740125 122740150 -74455282 + (CGGGGG)n Simple_repeat Simple_repeat 6 30 0 5 1521 378 57 0 0 chr1 122740276 122740329 -74455103 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1521 315 0 0 0 chr1 122740329 122740363 -74455069 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1521 516 273 89 57 chr1 122740389 122740688 -74454744 - B4A SINE B4 -24 268 3 5 1521 489 253 6 88 chr1 122741881 122742041 -74453391 + B1F SINE Alu 3 149 0 5 1521 602 268 102 18 chr1 122742063 122742306 -74453126 + B4A SINE B4 13 288 -4 5 1521 1052 154 5 26 chr1 122742875 122743068 -74452364 + ORR1A4 LTR MaLR 3 191 -138 5 1521 633 245 13 25 chr1 122743085 122743244 -74452188 - B4 SINE B4 -36 256 100 5 1521 628 182 0 26 chr1 122743257 122743409 -74452023 - Lx9 LINE L1 0 7644 7497 5 1521 225 65 0 0 chr1 122743418 122743449 -74451983 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1521 1314 203 59 0 chr1 122743450 122743721 -74451711 - Lx9 LINE L1 -257 7387 7101 5 1521 1178 254 31 3 chr1 122743746 122744038 -74451394 - MTE2b LTR MaLR -25 354 55 5 1521 226 197 66 0 chr1 122744110 122744171 -74451261 + ORR1A4 LTR MaLR 276 340 -39 5 1521 321 253 106 95 chr1 122744502 122744786 -74450646 + B4 SINE B4 2 288 -4 5 1521 483 18 0 0 chr1 122746336 122746392 -74449040 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1521 728 91 9 0 chr1 122746400 122746510 -74448922 + (GA)n Simple_repeat Simple_repeat 1 111 0 5 1521 711 258 65 5 chr1 122747320 122747519 -74447913 + ID_B1 SINE B4 1 211 -13 5 1521 213 65 0 0 chr1 122747527 122747558 -74447874 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1521 281 319 28 0 chr1 122747807 122747879 -74447553 + Charlie12 DNA MER1_type 7 80 -2793 5 1521 424 254 176 0 chr1 122748073 122748261 -74447171 + B4A SINE B4 3 223 -69 5 1521 621 0 0 0 chr1 122748325 122748394 -74447038 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1521 363 136 0 0 chr1 122749080 122749139 -74446293 + (GGA)n Simple_repeat Simple_repeat 2 60 0 5 1521 1328 260 38 16 chr1 122749533 122749900 -74445532 - MTE2b LTR MaLR 0 379 5 5 1521 666 293 74 61 chr1 122750410 122750817 -74444615 + RMER10A LTR ERVL 12 423 -19 5 1521 249 307 13 0 chr1 122752015 122752090 -74443342 - B4 SINE B4 0 292 217 5 1521 396 270 77 45 chr1 122752113 122752268 -74443164 - B4A SINE B4 -132 160 1 5 1521 261 204 0 0 chr1 122753019 122753073 -74442359 - B4 SINE B4 -4 288 235 5 1521 296 0 0 49 chr1 122753167 122753208 -74442224 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1521 382 279 52 39 chr1 122753229 122753382 -74442050 - RSINE1 SINE B4 0 165 11 5 1521 370 292 76 7 chr1 122753436 122753581 -74441851 - B4 SINE B4 -137 155 1 5 1521 582 257 26 63 chr1 122753623 122753814 -74441618 - B3A SINE B2 -1 197 14 5 1521 280 304 0 25 chr1 122754437 122754518 -74440914 - ID4_ SINE ID -2 81 3 5 1521 222 329 14 14 chr1 122754595 122754669 -74440763 + BC1_Mm scRNA scRNA 1 74 -78 5 1521 987 218 20 0 chr1 122754603 122754805 -74440627 + ID_B1 SINE B4 9 214 -10 5 1521 487 298 131 29 chr1 122755217 122755462 -74439970 + B4A SINE B4 1 270 -22 5 1521 522 46 0 0 chr1 122755464 122755529 -74439903 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1521 282 267 129 0 chr1 122756752 122756853 -74438579 - RMER30 DNA MER1_type -2 200 87 5 1521 957 251 5 5 chr1 122756876 122757100 -74438332 - ID_B1 SINE B4 0 224 1 5 1521 234 333 48 0 chr1 122757435 122757519 -74437913 - MIRb SINE MIR -130 138 51 5 1521 292 264 44 44 chr1 122758218 122758309 -74437123 - B4 SINE B4 0 292 202 5 1521 303 303 80 33 chr1 122758350 122758500 -74436932 + MT2A LTR ERVL 164 320 -213 5 1521 3531 89 0 6 chr1 122758501 122758715 -74436717 - L1_Mm LINE L1 -937 4946 4734 6 1521 207 0 0 0 chr1 122758715 122758738 -74436694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1521 3531 89 0 6 chr1 122758738 122759007 -74436425 - L1_Mm LINE L1 -1150 4733 4466 6 1521 2577 89 8 3 chr1 122759008 122759369 -74436063 + L1_Mus3 LINE L1 6261 6623 -15 6 1521 286 311 118 22 chr1 122759379 122759514 -74435918 + MT2A LTR ERVL 314 461 -72 5 1521 404 299 0 9 chr1 122759908 122760016 -74435416 - B4A SINE B4 0 292 186 6 1521 216 323 111 82 chr1 122760335 122760470 -74434962 + B4A SINE B4 24 162 -130 6 1521 183 150 50 0 chr1 122760565 122760625 -74434807 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1521 1427 227 88 0 chr1 122760694 122761024 -74434408 - MTE2b LTR MaLR -20 359 1 6 1521 246 289 28 28 chr1 122761060 122761167 -74434265 + Tigger15a DNA TcMar 133 239 -476 6 1521 970 308 10 7 chr1 122761657 122761948 -74433484 + B4 SINE B4 1 292 0 6 1521 282 56 0 0 chr1 122761988 122762024 -74433408 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1521 1010 168 10 59 chr1 122762215 122762418 -74433014 - URR1B DNA MER1_type -32 193 1 6 1521 270 214 0 0 chr1 122762443 122762499 -74432933 - B3A SINE B2 -133 65 10 6 1521 21 36 0 0 chr1 122762669 122762697 -74432735 + AT_rich Low_complexity Low_complexity 1 28 0 6 1521 497 16 16 0 chr1 122762704 122762766 -74432666 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1521 332 217 0 0 chr1 122762766 122762826 -74432606 - RSINE1 SINE B4 -103 62 3 6 1521 21 0 0 0 chr1 122762834 122762855 -74432577 + AT_rich Low_complexity Low_complexity 1 21 0 6 1521 329 354 111 13 chr1 122763073 122763299 -74432133 - LTR16B2 LTR ERVL -208 254 7 6 1521 438 246 70 9 chr1 122763440 122763555 -74431877 + B4 SINE B4 4 125 -167 6 1521 486 170 0 0 chr1 122763648 122763742 -74431690 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 1521 382 299 50 50 chr1 122764299 122764500 -74430932 + RMER15 LTR ERVL 340 540 -35 6 1521 432 0 0 0 chr1 122764615 122764663 -74430769 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1521 470 269 17 9 chr1 122764664 122764780 -74430652 - RSINE1 SINE B4 -46 119 3 6 1521 468 326 73 5 chr1 122765890 122766081 -74429351 + B4 SINE B4 2 205 -87 6 1521 234 338 13 0 chr1 122766126 122766203 -74429229 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1521 885 276 98 27 chr1 122766524 122766859 -74428573 - ORR1E LTR MaLR 0 359 1 6 1521 1221 260 49 19 chr1 122767186 122767554 -74427878 - MTEb LTR MaLR 0 379 1 6 1521 351 0 0 0 chr1 122767837 122767876 -74427556 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1521 838 304 11 18 chr1 122767876 122768154 -74427278 - B4A SINE B4 -11 281 6 6 1521 830 234 58 5 chr1 122768433 122768640 -74426792 + ID_B1 SINE B4 6 223 -1 6 1521 529 116 21 10 chr1 122768641 122768737 -74426695 + (GAAAA)n Simple_repeat Simple_repeat 3 99 0 6 1521 285 222 18 18 chr1 122769776 122769886 -74425546 + CT-rich Low_complexity Low_complexity 1 110 0 6 1521 222 265 0 0 chr1 122769886 122769935 -74425497 - B1F SINE Alu -16 133 85 6 1521 493 358 6 6 chr1 122769892 122770058 -74425374 - ID_B1 SINE B4 -48 176 11 6 1521 979 225 38 108 chr1 122770515 122770918 -74424514 + MTE2a LTR MaLR 2 365 -5 6 1521 297 307 0 29 chr1 122771750 122771854 -74423578 + GA-rich Low_complexity Low_complexity 3 103 0 6 1521 354 45 0 0 chr1 122771909 122771953 -74423479 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 6 1521 477 115 0 0 chr1 122772818 122772905 -74422527 + (TG)n Simple_repeat Simple_repeat 1 87 0 6 1521 508 297 31 19 chr1 122772921 122773082 -74422350 - B4A SINE B4 0 292 130 6 1521 527 245 70 85 chr1 122773160 122773361 -74422071 + RMER30 DNA MER1_type 2 199 -3 6 1521 227 235 79 45 chr1 122773851 122773940 -74421492 + LTR33B LTR ERVL 384 475 -28 6 1521 472 272 169 12 chr1 122774618 122774860 -74420572 + RMER15 LTR ERVL 281 560 -15 6 1521 229 211 19 19 chr1 122776021 122776074 -74419358 + RMER15 LTR ERVL 1 53 -522 6 1521 425 274 41 105 chr1 122776148 122776319 -74419113 + B3A SINE B2 36 195 -3 6 1521 693 253 53 5 chr1 122776406 122776593 -74418839 + RMER15 LTR ERVL 380 575 0 6 1521 491 276 25 31 chr1 122776910 122777071 -74418361 + RMER30 DNA MER1_type 15 174 -28 6 1521 649 110 0 18 chr1 122777320 122777431 -74418001 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 6 1521 426 85 0 0 chr1 122777421 122777480 -74417952 + (GGGGA)n Simple_repeat Simple_repeat 3 61 0 6 1521 1563 237 12 56 chr1 122777488 122777899 -74417533 - MTD LTR MaLR -26 393 1 6 1521 216 97 0 0 chr1 122777959 122777990 -74417442 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1521 867 288 52 59 chr1 122778009 122778297 -74417135 - B4A SINE B4 0 292 7 6 1521 287 319 0 0 chr1 122778507 122778579 -74416853 + ID4_ SINE ID 12 83 0 6 1521 492 282 47 74 chr1 122778826 122779125 -74416307 + B4A SINE B4 2 292 0 6 1521 682 282 65 23 chr1 122779194 122779408 -74416024 + ID_B1 SINE B4 2 224 0 6 1521 890 285 6 74 chr1 122780786 122781097 -74414335 + B4A SINE B4 1 290 -2 6 1521 333 0 0 0 chr1 122781133 122781170 -74414262 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1521 206 75 0 48 chr1 122781180 122781222 -74414210 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 6 1521 465 295 35 88 chr1 122781357 122781528 -74413904 + RSINE1 SINE B4 4 165 0 6 1521 234 0 0 0 chr1 122781531 122781557 -74413875 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1521 35 41 0 0 chr1 122781579 122781628 -74413804 + AT_rich Low_complexity Low_complexity 1 49 0 6 1521 207 114 0 0 chr1 122782784 122782819 -74412613 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6 1521 501 17 0 0 chr1 122783458 122783516 -74411916 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1521 293 243 34 200 chr1 122784209 122784384 -74411048 + RMER15 LTR ERVL 14 159 -416 6 1521 256 300 25 0 chr1 122784762 122784842 -74410590 + B4 SINE B4 2 83 -209 6 1521 433 242 62 15 chr1 122784835 122784965 -74410467 - B4 SINE B4 -30 262 127 6 1521 720 161 0 0 chr1 122784992 122785104 -74410328 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 6 1521 1137 171 29 0 chr1 122785417 122785627 -74409805 - URR1B DNA MER1_type -8 217 2 6 1521 30 0 0 0 chr1 122785938 122785968 -74409464 + AT_rich Low_complexity Low_complexity 1 30 0 6 1521 387 203 0 0 chr1 122786362 122786431 -74409001 + URR1B DNA MER1_type 2 70 -155 6 1521 1485 114 195 3 chr1 122786428 122786710 -74408722 - ORR1B1 LTR MaLR -58 336 1 6 1521 558 212 44 29 chr1 122787111 122787247 -74408185 + B4A SINE B4 112 249 -43 6 1521 384 254 33 3 chr1 122787323 122787466 -74407966 + MLT1A0 LTR MaLR 257 408 0 6 1521 513 47 0 0 chr1 122787516 122787580 -74407852 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1521 862 301 29 11 chr1 122787596 122787871 -74407561 - B4A SINE B4 -4 288 9 6 1521 237 33 0 0 chr1 122788664 122788694 -74406738 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1521 566 331 54 50 chr1 122788697 122788958 -74406474 - B4 SINE B4 -30 262 1 6 1521 327 193 5 81 chr1 122789129 122789326 -74406106 + RMER17C LTR ERVK 72 253 -157 6 1521 2427 170 100 23 chr1 122789676 122790206 -74405226 + RMER4B LTR ERVK 15 585 0 6 1521 1174 223 135 23 chr1 122790253 122790602 -74404830 - MTD LTR MaLR -14 405 18 6 1521 254 178 18 61 chr1 122791580 122791694 -74403738 + GA-rich Low_complexity Low_complexity 6 114 0 6 1521 388 340 14 0 chr1 122791727 122791868 -74403564 + GA-rich Low_complexity Low_complexity 1 143 0 6 1521 705 65 9 18 chr1 122792292 122792402 -74403030 + (TTCC)n Simple_repeat Simple_repeat 2 110 0 6 1521 357 138 12 24 chr1 122793250 122793332 -74402100 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1521 663 241 63 42 chr1 122794123 122794314 -74401118 - B3A SINE B2 -2 196 2 6 1521 237 143 0 0 chr1 122794331 122794366 -74401066 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1521 420 20 0 0 chr1 122794512 122794561 -74400871 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1521 272 307 93 67 chr1 122794727 122794877 -74400555 + RSINE1 SINE B4 10 163 -2 6 1521 783 226 150 4 chr1 122794896 122795123 -74400309 - L1_Mur3 LINE L1 -758 5122 4863 6 1521 286 271 39 59 chr1 122795121 122795223 -74400209 + Lx8 LINE L1 7184 7283 -190 6 1521 27 0 0 0 chr1 122795356 122795383 -74400049 + AT_rich Low_complexity Low_complexity 1 27 0 6 1521 1186 223 116 3 chr1 122795499 122795645 -74399787 - Lx7 LINE L1 -1 7695 7517 6 1521 263 28 28 0 chr1 122795645 122795681 -74399751 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1521 1186 223 116 3 chr1 122795681 122795827 -74399605 - Lx7 LINE L1 -180 7516 7371 6 1521 1347 203 92 7 chr1 122795878 122796171 -74399261 + MTC LTR MaLR 104 421 0 6 1521 4741 188 47 40 chr1 122796175 122797669 -74397763 - Lx6 LINE L1 -702 6758 5226 6 1521 5351 115 69 22 chr1 122797669 122798584 -74396848 - RMER17B LTR ERVK 0 958 1 6 1521 4621 151 34 47 chr1 122798584 122798800 -74396632 - Lx6 LINE L1 -655 5225 5018 6 1521 621 0 0 0 chr1 122798800 122798869 -74396563 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 1521 4621 225 26 133 chr1 122798869 122799014 -74396418 - Lx6 LINE L1 -855 5022 5003 6 1521 189 0 0 0 chr1 122799014 122799035 -74396397 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 6 1521 3642 234 26 143 chr1 122799035 122799425 -74396007 - Lx6 LINE L1 -875 5002 4635 6 1521 261 0 0 0 chr1 122799427 122799456 -74395976 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1521 265 324 89 63 chr1 122799617 122799775 -74395657 + RSINE1 SINE B4 2 163 -2 6 1521 783 226 150 4 chr1 122799794 122800021 -74395411 - L1_Mur3 LINE L1 -758 5122 4863 6 1521 246 288 73 67 chr1 122800019 122800198 -74395234 + Lx8 LINE L1 7184 7363 -110 6 1521 1185 223 117 3 chr1 122800408 122800556 -74394876 - Lx6 LINE L1 -1 7695 7517 6 1521 263 28 28 0 chr1 122800556 122800592 -74394840 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1521 1185 231 123 4 chr1 122800592 122800770 -74394662 - Lx6 LINE L1 -180 7516 7371 6 1521 1395 206 93 0 chr1 122800789 122801080 -74394352 + MTC LTR MaLR 104 421 0 6 1521 4662 190 47 38 chr1 122801084 122802575 -74392857 - Lx6 LINE L1 -702 6758 5226 6 1521 5353 115 69 20 chr1 122802575 122803488 -74391944 - RMER17B LTR ERVK 0 958 1 7 1521 4643 150 33 44 chr1 122803488 122803704 -74391728 - Lx6 LINE L1 -655 5225 5019 6 1521 791 72 0 9 chr1 122803704 122803816 -74391616 + (TTTC)n Simple_repeat Simple_repeat 1 111 0 7 1521 3982 231 31 128 chr1 122803816 122804339 -74391093 - Lx6 LINE L1 -855 5022 4623 6 1521 279 0 0 0 chr1 122804339 122804370 -74391062 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1521 3982 231 31 128 chr1 122804370 122804439 -74390993 - Lx6 LINE L1 -1255 4622 4556 6 1521 614 159 32 0 chr1 122804435 122804561 -74390871 - Lx6 LINE L1 -2951 2929 2800 6 1521 311 183 0 12 chr1 122804590 122804673 -74390759 + (TATG)n Simple_repeat Simple_repeat 1 82 0 7 1521 464 300 53 7 chr1 122804673 122804824 -74390608 - RSINE1 SINE B4 0 165 8 7 1521 1252 209 149 9 chr1 122804958 122805286 -74390146 - ORR1D1 LTR MaLR 0 374 1 7 1521 1746 179 24 32 chr1 122805286 122805655 -74389777 - ORR1D1-int LTR MaLR 0 1370 1005 7 1521 466 281 15 15 chr1 122805748 122805878 -74389554 - B1F2 SINE Alu -15 134 5 7 1521 414 0 0 0 chr1 122805905 122805951 -74389481 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 7 1521 522 295 19 51 chr1 122805952 122806109 -74389323 - RSINE1 SINE B4 -10 155 4 7 1521 275 297 22 0 chr1 122806233 122806324 -74389108 + RSINE1 SINE B4 13 105 -60 7 1521 301 269 58 10 chr1 122806628 122806751 -74388681 - L1M5 LINE L1 -1554 4592 4466 7 1521 195 42 0 0 chr1 122807117 122807141 -74388291 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 7 1521 360 0 0 0 chr1 122807917 122807957 -74387475 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1521 822 320 3 30 chr1 122807971 122808267 -74387165 - B4A SINE B4 -4 288 1 7 1521 265 254 16 0 chr1 122808428 122808491 -74386941 + MIRc SINE MIR 65 128 -140 7 1521 489 47 0 0 chr1 122810411 122810475 -74384957 + (CTA)n Simple_repeat Simple_repeat 2 65 0 7 1521 347 235 98 0 chr1 122810502 122810604 -74384828 - ID_B1 SINE B4 -42 182 71 7 1521 2359 232 122 45 chr1 122810602 122811862 -74383570 - ORR1D2-int LTR MaLR -12 1358 1 7 1521 1405 229 54 8 chr1 122811864 122812216 -74383216 - ORR1D2 LTR MaLR -2 368 1 7 1521 271 274 32 0 chr1 122812498 122812593 -74382839 + MTEa LTR MaLR 278 375 -4 7 1521 305 290 99 12 chr1 122813122 122813293 -74382139 + MIR SINE MIR 12 197 -65 7 1521 261 258 32 0 chr1 122813323 122813385 -74382047 + B4 SINE B4 9 72 -220 7 1521 723 108 0 0 chr1 122813385 122813514 -74381918 + (CATA)n Simple_repeat Simple_repeat 4 132 0 7 1521 331 311 7 90 chr1 122813561 122813706 -74381726 + B4 SINE B4 160 292 0 7 1521 339 65 0 0 chr1 122813722 122813768 -74381664 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1521 405 0 0 0 chr1 122813768 122813812 -74381620 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1522 324 274 74 14 chr1 122814497 122814523 -74380909 - Ricksha_c DNA MuDR -1670 378 344 7 1522 507 290 77 5 chr1 122814523 122814717 -74380715 - ERVL-int LTR ERVL 0 5757 5550 7 1522 323 94 73 0 chr1 122814845 122814941 -74380491 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 7 1522 249 324 82 18 chr1 122814986 122815096 -74380336 - ID_B1 SINE B4 0 224 108 7 1522 331 269 33 19 chr1 122815003 122815106 -74380326 - B1F SINE Alu -29 120 17 7 1522 455 295 99 30 chr1 122815110 122815372 -74380060 - ERVL-int LTR ERVL -3374 2383 2104 7 1522 232 333 0 0 chr1 122815372 122815435 -74379997 - MLT1A LTR MaLR -133 241 179 7 1522 305 278 0 0 chr1 122815466 122815538 -74379894 + RSINE1 SINE B4 4 75 -90 7 1522 1897 212 116 10 chr1 122815549 122816049 -74379383 - RMER15 LTR ERVL -14 561 9 7 1522 329 281 112 0 chr1 122816171 122816260 -74379172 + RSINE1 SINE B4 67 165 0 7 1522 453 36 0 0 chr1 122816275 122816330 -74379102 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1522 203 88 29 0 chr1 122816782 122816816 -74378616 + (CATA)n Simple_repeat Simple_repeat 4 38 0 7 1522 217 103 51 0 chr1 122816817 122816856 -74378576 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 7 1522 352 238 58 125 chr1 122817192 122817312 -74378120 + B4A SINE B4 4 115 -177 7 1522 548 235 128 59 chr1 122817315 122817636 -74377796 - RLTR15 LTR ERVK -16 343 1 7 1522 309 244 200 0 chr1 122817639 122817729 -74377703 + B4A SINE B4 114 221 -71 7 1522 304 204 0 0 chr1 122817805 122817859 -74377573 + B4A SINE B4 216 269 -23 7 1522 312 48 0 0 chr1 122817861 122817903 -74377529 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1522 1062 65 0 0 chr1 122817988 122818127 -74377305 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 7 1522 286 297 36 59 chr1 122818866 122819088 -74376344 - L1M4 LINE L1 -1783 4363 4147 7 1522 269 278 205 29 chr1 122819107 122819207 -74376225 - L1M4 LINE L1 -2199 3947 3846 7 1522 600 281 30 35 chr1 122819207 122819406 -74376026 - B3A SINE B2 0 198 1 7 1522 269 278 205 29 chr1 122819406 122819583 -74375849 - L1M4 LINE L1 -2301 3845 3621 7 1522 564 229 207 40 chr1 122819583 122819869 -74375563 - MTE2b LTR MaLR 0 379 64 7 1522 654 299 64 40 chr1 122819983 122820234 -74375198 - B4A SINE B4 -35 257 1 7 1522 548 274 137 39 chr1 122820234 122820598 -74374834 - L1MC3 LINE L1 -2 7783 7384 7 1522 450 0 0 0 chr1 122820622 122820672 -74374760 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1522 828 262 66 11 chr1 122821001 122821275 -74374157 + B4A SINE B4 2 290 -2 7 1522 201 94 0 0 chr1 122822763 122822795 -74372637 + (TATG)n Simple_repeat Simple_repeat 4 35 0 7 1522 339 202 0 0 chr1 122822861 122822940 -74372492 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1522 464 320 0 22 chr1 122822949 122823131 -74372301 + (TATG)n Simple_repeat Simple_repeat 1 178 0 7 1522 21 0 0 0 chr1 122823275 122823296 -74372136 + AT_rich Low_complexity Low_complexity 1 21 0 7 1522 354 289 33 0 chr1 122823621 122823742 -74371690 - L1MB7 LINE L1 -169 6009 5885 7 1522 684 198 0 0 chr1 122823767 122824094 -74371338 + (TG)n Simple_repeat Simple_repeat 1 327 0 7 1522 511 300 89 50 chr1 122824114 122824395 -74371037 - B4 SINE B4 0 292 1 7 1522 935 263 36 26 chr1 122824419 122824727 -74370705 - L1MB7 LINE L1 -301 5883 5573 7 1522 189 121 0 0 chr1 122824758 122824791 -74370641 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 7 1522 543 16 0 0 chr1 122824792 122824856 -74370576 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1522 288 0 0 0 chr1 122825069 122825101 -74370331 + (CAA)n Simple_repeat Simple_repeat 3 34 0 7 1522 3205 76 19 2 chr1 122825363 122825796 -74369636 - L1Md_F2 LINE L1 0 6582 6143 7 1522 1163 250 42 63 chr1 122826745 122826996 -74368436 - MTE2b LTR MaLR -7 372 111 7 1522 2787 158 69 29 chr1 122826996 122827545 -74367887 - RMER15 LTR ERVL 0 575 5 7 1522 1163 250 42 63 chr1 122827545 122827620 -74367812 - MTE2b LTR MaLR -269 110 53 7 1522 1114 168 62 0 chr1 122827620 122827828 -74367604 + URR1B DNA MER1_type 5 225 0 7 1522 1163 250 42 63 chr1 122827828 122827880 -74367552 - MTE2b LTR MaLR -327 52 1 7 1522 719 145 21 28 chr1 122828253 122828395 -74367037 + URR1B DNA MER1_type 85 225 0 7 1522 225 273 0 0 chr1 122828535 122828590 -74366842 - ID4 SINE ID -27 56 2 7 1522 1011 302 52 60 chr1 122828649 122829163 -74366269 - MT2A LTR ERVL 0 533 24 7 1522 1139 219 111 0 chr1 122829171 122829459 -74365973 - L1_Mur3 LINE L1 -866 5014 4695 7 1522 2369 97 13 44 chr1 122829524 122829913 -74365519 - Lx2 LINE L1 0 6997 6621 7 1522 552 279 25 12 chr1 122829915 122830078 -74365354 - MT2A LTR ERVL -85 448 284 7 1522 1108 97 0 0 chr1 122830078 122830222 -74365210 - Lx2 LINE L1 -403 6594 6451 7 1522 699 294 33 0 chr1 122830603 122830814 -74364618 - ID_B1 SINE B4 -6 218 1 7 1522 419 291 39 33 chr1 122830943 122831124 -74364308 - LTR40a LTR ERVL -2 517 336 7 1522 788 270 14 32 chr1 122831194 122831412 -74364020 - ID_B1 SINE B4 -2 222 9 7 1522 384 22 0 0 chr1 122831760 122831805 -74363627 + (TTG)n Simple_repeat Simple_repeat 3 47 0 7 1522 207 212 35 0 chr1 122831853 122831938 -74363494 + CT-rich Low_complexity Low_complexity 1 88 0 7 1522 370 298 28 14 chr1 122832949 122833092 -74362340 + B4 SINE B4 40 184 -108 7 1522 1210 244 116 15 chr1 122833467 122833804 -74361628 - MTEa LTR MaLR -8 371 1 7 1522 934 240 25 62 chr1 122834099 122834343 -74361089 - B4 SINE B4 0 292 58 7 1522 887 242 58 140 chr1 122834363 122834805 -74360627 - MT2A LTR ERVL -74 527 1 7 1522 213 200 0 0 chr1 122835087 122835127 -74360305 - B4 SINE B4 -252 40 1 7 1522 342 270 0 0 chr1 122835322 122835411 -74360021 + BC1_Mm scRNA scRNA 1 89 -63 7 1522 567 0 0 0 chr1 122835459 122835522 -74359910 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1522 260 265 36 0 chr1 122835981 122836064 -74359368 + MER5A1 DNA MER1_type 31 116 -50 7 1522 536 306 122 48 chr1 122836104 122836375 -74359057 - B4 SINE B4 -1 291 1 7 1522 1249 249 182 19 chr1 122837076 122837608 -74357824 - RMER17A2 LTR ERVK -287 619 1 7 1522 519 290 76 72 chr1 122837725 122838015 -74357417 - B4A SINE B4 0 292 2 7 1522 579 162 8 79 chr1 122839235 122839362 -74356070 + B4 SINE B4 1 118 -174 7 1522 819 265 41 22 chr1 122840639 122840909 -74354523 + B4 SINE B4 2 276 -16 7 1522 302 297 11 0 chr1 122840927 122841018 -74354414 + (CA)n Simple_repeat Simple_repeat 1 92 0 7 1522 253 304 0 0 chr1 122841165 122841234 -74354198 + ID4 SINE ID 13 81 -2 7 1522 461 253 59 47 chr1 122841458 122841621 -74353811 + B3 SINE B2 9 187 -8 7 1522 418 326 7 0 chr1 122841724 122841862 -74353570 + MER2 DNA MER2_type 98 236 -109 7 1522 297 0 0 0 chr1 122841882 122841915 -74353517 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1522 254 91 0 0 chr1 122843193 122843226 -74352206 - L1MA8 LINE L1 -77 6214 6182 7 1522 589 247 7 7 chr1 122843270 122843421 -74352011 - Tigger5 DNA MER2_type -41 2365 2215 7 1522 336 48 0 0 chr1 122843432 122843474 -74351958 + (CAA)n Simple_repeat Simple_repeat 3 44 0 7 1522 540 299 0 7 chr1 122843474 122843612 -74351820 + B3A SINE B2 2 138 -60 7 1522 234 0 0 0 chr1 122843836 122843862 -74351570 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1522 510 321 27 5 chr1 122843890 122844078 -74351354 + ID_B1 SINE B4 3 194 -30 7 1522 348 24 0 0 chr1 122844203 122844244 -74351188 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1522 370 53 17 17 chr1 122844244 122844302 -74351130 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1522 2317 169 81 11 chr1 122844731 122845173 -74350259 + Lx6 LINE L1 6378 6850 -610 7 1522 330 207 12 24 chr1 122845167 122845251 -74350181 + Lx6 LINE L1 7368 7450 -10 7 1522 351 329 14 21 chr1 122845519 122845662 -74349770 - MLT1G3 LTR MaLR -33 562 421 7 1522 377 280 90 14 chr1 122845823 122845968 -74349464 - Lx7 LINE L1 -331 7142 6976 7 1522 703 246 14 0 chr1 122845963 122846105 -74349327 + Lx8 LINE L1 7140 7283 -190 8 1522 2148 104 16 0 chr1 122846112 122846428 -74349004 - ORR1A4 LTR MaLR -8 321 1 8 1522 222 37 0 0 chr1 122846505 122846532 -74348900 + (CAGAGA)n Simple_repeat Simple_repeat 6 32 0 8 1522 546 275 14 0 chr1 122846819 122846957 -74348475 + B4 SINE B4 1 140 -152 8 1522 1384 151 45 17 chr1 122846959 122847249 -74348183 + ORR1A4 LTR MaLR 1 298 -31 8 1522 2051 117 9 12 chr1 122847248 122847568 -74347864 - ORR1A2 LTR MaLR -8 319 1 8 1522 282 56 0 0 chr1 122847568 122847602 -74347830 + ORR1A4 LTR MaLR 305 338 -8 8 1522 632 255 14 7 chr1 122847601 122847747 -74347685 + B4 SINE B4 134 280 -12 8 1522 447 19 0 0 chr1 122847770 122847822 -74347610 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1522 324 0 0 0 chr1 122847822 122847857 -74347575 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1522 393 22 0 0 chr1 122848204 122848250 -74347182 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1522 623 13 13 0 chr1 122848250 122848325 -74347107 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1522 603 236 125 90 chr1 122849922 122850201 -74345231 + B4A SINE B4 1 289 -3 8 1522 240 111 0 0 chr1 122850217 122850253 -74345179 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1522 437 257 233 6 chr1 122850530 122850702 -74344730 - ID_B1 SINE B4 -10 214 4 8 1522 4963 186 34 6 chr1 122850843 122852753 -74342679 - Lx5 LINE L1 -7 7043 5063 8 1522 1135 179 55 0 chr1 122852862 122853063 -74342369 + B3 SINE B2 4 215 -1 8 1522 297 98 0 0 chr1 122853117 122853158 -74342274 - Lx4B LINE L1 -1226 5832 5792 8 1522 252 303 14 96 chr1 122853566 122853712 -74341720 + RMER15 LTR ERVL 1 134 -441 8 1522 571 275 122 16 chr1 122853730 122853985 -74341447 + RMER15 LTR ERVL 278 559 -16 8 1522 395 335 120 0 chr1 122854248 122854406 -74341026 + ID_B1 SINE B4 6 182 -42 8 1522 487 260 95 14 chr1 122855023 122855171 -74340261 + B4A SINE B4 126 285 -7 8 1522 225 255 121 51 chr1 122855222 122855437 -74339995 - RLTR15 LTR ERVK -5 354 125 8 1522 413 165 107 27 chr1 122855523 122855635 -74339797 - RLTR15 LTR ERVK -238 121 1 8 1522 473 338 0 15 chr1 122855812 122855944 -74339488 - RSINE1 SINE B4 -28 137 8 8 1522 7294 95 33 14 chr1 122855972 122856901 -74338531 + Lx LINE L1 5590 6518 -136 8 1522 279 0 0 0 chr1 122856901 122856932 -74338500 + (TGGG)n Simple_repeat Simple_repeat 3 33 0 8 1522 7294 95 33 14 chr1 122856932 122857044 -74338388 + Lx LINE L1 6519 6649 -5 8 1522 267 31 0 0 chr1 122857386 122857418 -74338014 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 8 1522 414 0 0 0 chr1 122857464 122857510 -74337922 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1522 282 229 0 0 chr1 122857630 122857700 -74337732 + CT-rich Low_complexity Low_complexity 3 72 0 8 1522 727 251 67 5 chr1 122857701 122857909 -74337523 - B4 SINE B4 -67 225 5 8 1522 717 325 11 35 chr1 122859136 122859423 -74336009 + B4 SINE B4 2 281 -11 8 1522 282 73 0 0 chr1 122859452 122859493 -74335939 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1522 1044 199 48 10 chr1 122859647 122859855 -74335577 + B3 SINE B2 1 216 0 8 1522 772 286 56 38 chr1 122860014 122860220 -74335212 - B4A SINE B4 0 292 83 8 1522 333 0 0 0 chr1 122860220 122860257 -74335175 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 8 1522 772 286 56 38 chr1 122860257 122860337 -74335095 - B4A SINE B4 -210 82 1 8 1522 183 222 0 0 chr1 122861138 122861183 -74334249 + CT-rich Low_complexity Low_complexity 1 45 0 8 1522 582 286 20 0 chr1 122861629 122861776 -74333656 + B3A SINE B2 3 152 -46 8 1522 180 0 0 0 chr1 122861798 122861818 -74333614 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1522 390 324 0 0 chr1 122863292 122863403 -74332029 + B4 SINE B4 83 193 -99 8 1522 315 49 0 0 chr1 122863406 122863447 -74331985 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1522 271 203 13 13 chr1 122864661 122864736 -74330696 + GA-rich Low_complexity Low_complexity 2 76 0 8 1522 455 210 155 32 chr1 122864946 122864986 -74330446 - CYRA11_Mm Unknown Y-chromosome -243 374 204 8 1522 940 79 14 0 chr1 122864986 122865126 -74330306 + URR1B DNA MER1_type 84 225 0 8 1522 620 298 96 0 chr1 122865230 122865428 -74330004 + MTEa LTR MaLR 6 222 -157 8 1522 231 260 68 14 chr1 122865766 122865840 -74329592 + MTEa LTR MaLR 211 288 -91 8 1522 381 202 57 107 chr1 122866410 122866532 -74328900 + B4A SINE B4 3 118 -174 8 1522 417 70 0 0 chr1 122867126 122867183 -74328249 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1522 337 312 87 57 chr1 122867744 122868009 -74327423 - B4 SINE B4 -17 275 3 8 1522 489 249 276 28 chr1 122868814 122869174 -74326258 - Lx8 LINE L1 -1 7472 7024 8 1522 510 109 30 0 chr1 122869889 122869990 -74325442 + (TC)n Simple_repeat Simple_repeat 1 104 0 8 1522 267 301 0 0 chr1 122870051 122870134 -74325298 + MIR SINE MIR 104 186 -76 8 1522 1244 232 179 0 chr1 122870237 122870556 -74324876 + MTEa LTR MaLR 1 376 -3 8 1522 372 22 0 0 chr1 122870925 122870970 -74324462 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1522 526 303 106 16 chr1 122871037 122871225 -74324207 - B4 SINE B4 -86 206 2 8 1522 210 91 0 0 chr1 122871487 122871520 -74323912 + (GGCTG)n Simple_repeat Simple_repeat 2 34 0 8 1522 372 111 0 0 chr1 122871676 122871739 -74323693 + (T)n Simple_repeat Simple_repeat 1 63 0 8 1522 624 83 0 0 chr1 122871763 122871859 -74323573 + (TC)n Simple_repeat Simple_repeat 2 97 0 8 1522 243 0 0 0 chr1 122871859 122871885 -74323547 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1522 700 353 43 0 chr1 122871890 122872148 -74323284 - B4A SINE B4 -23 269 1 8 1522 326 302 160 0 chr1 122872148 122872308 -74323124 - MER2 DNA MER2_type -78 267 81 8 1522 544 262 14 7 chr1 122872839 122872981 -74322451 - Lx8 LINE L1 -1012 6461 6319 8 1522 1841 234 118 20 chr1 122873044 122873542 -74321890 + Lx8 LINE L1 6573 7119 -354 8 1522 288 253 0 0 chr1 122873545 122873636 -74321796 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 1522 326 282 0 0 chr1 122873646 122873717 -74321715 + Lx8 LINE L1 7049 7119 -354 8 1522 245 294 15 0 chr1 122873718 122873786 -74321646 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 8 1522 232 227 88 49 chr1 122873802 122873904 -74321528 + Lx8 LINE L1 7360 7465 -8 8 1522 210 91 0 0 chr1 122874673 122874706 -74320726 + (G)n Simple_repeat Simple_repeat 1 33 0 8 1522 846 270 9 18 chr1 122875222 122875448 -74319984 + ID_B1 SINE B4 1 224 0 8 1522 804 219 72 34 chr1 122876065 122876273 -74319159 - ID_B1 SINE B4 -7 217 2 8 1522 515 250 40 0 chr1 122876739 122876891 -74318541 + ORR1E LTR MaLR 39 196 -163 8 1522 233 329 24 0 chr1 122876926 122877008 -74318424 + ORR1E LTR MaLR 273 356 -3 8 1522 227 276 12 62 chr1 122877043 122877124 -74318308 - B4 SINE B4 -214 78 2 8 1522 282 275 75 0 chr1 122877531 122877611 -74317821 + PB1D7 SINE Alu 6 91 -29 8 1522 483 271 0 24 chr1 122877544 122877669 -74317763 + ID_B1 SINE B4 103 224 0 8 1522 434 18 18 0 chr1 122877944 122877999 -74317433 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1522 244 312 62 0 chr1 122878009 122878073 -74317359 - B4A SINE B4 -2 290 223 8 1522 823 239 7 15 chr1 122878080 122878294 -74317138 - B3A SINE B2 -3 213 10 8 1522 585 295 186 0 chr1 122878299 122878492 -74316940 - B4A SINE B4 -63 229 1 8 1522 437 289 0 0 chr1 122878933 122879037 -74316395 - B3A SINE B2 -92 106 3 8 1522 330 26 0 0 chr1 122879168 122879207 -74316225 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1522 405 289 34 27 chr1 122879238 122879384 -74316048 - RSINE1 SINE B4 -14 151 5 8 1522 324 0 0 0 chr1 122879952 122879988 -74315444 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1522 481 158 228 0 chr1 122880005 122880106 -74315326 - RSINE1 SINE B4 -41 124 1 8 1522 22 35 0 0 chr1 122880184 122880213 -74315219 + AT_rich Low_complexity Low_complexity 1 29 0 8 1522 506 187 11 45 chr1 122880891 122881012 -74314420 + CT-rich Low_complexity Low_complexity 57 174 0 8 1522 1057 64 29 6 chr1 122881012 122881184 -74314248 + (TTCCC)n Simple_repeat Simple_repeat 2 177 0 8 1522 506 187 11 45 chr1 122881184 122881241 -74314191 + polypyrimidine Low_complexity Low_complexity 2 56 0 8 1522 243 257 43 0 chr1 122881246 122881316 -74314116 - B2_Mm2 SINE B2 -107 88 16 8 1522 226 259 35 0 chr1 122881326 122881384 -74314048 - B4 SINE B4 -125 167 108 8 1522 528 16 0 0 chr1 122881404 122881465 -74313967 + (TTTTC)n Simple_repeat Simple_repeat 5 65 0 8 1522 880 213 259 17 chr1 122881484 122881785 -74313647 - ORR1D1 LTR MaLR 0 374 1 8 1522 223 289 121 11 chr1 122882925 122883016 -74312416 + L2a LINE L2 3325 3425 -1 8 1522 272 293 0 39 chr1 122883098 122883176 -74312256 - B4 SINE B4 -1 291 217 8 1522 706 252 39 29 chr1 122883172 122883376 -74312056 - B3 SINE B2 -5 211 6 8 1522 766 262 69 0 chr1 122883382 122883584 -74311848 - B4 SINE B4 -63 229 14 8 1522 276 369 60 47 chr1 122883663 122884027 -74311405 + L1MEg2 LINE L1 54 422 -6030 8 1522 366 365 75 25 chr1 122884112 122884432 -74311000 + L1MEg2 LINE L1 641 976 -5476 8 1522 340 236 0 18 chr1 122884640 122884752 -74310680 + GA-rich Low_complexity Low_complexity 1 110 0 8 1522 746 229 18 157 chr1 122885305 122885522 -74309910 + B3A SINE B2 7 193 -2 8 1522 207 100 0 0 chr1 122885734 122885764 -74309668 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1522 487 294 14 0 chr1 122885928 122886074 -74309358 - B4A SINE B4 -12 280 133 8 1522 719 239 28 13 chr1 122886595 122886778 -74308654 + B3A SINE B2 1 181 -14 8 1522 432 284 112 0 chr1 122886966 122887100 -74308332 + RSINE1 SINE B4 13 161 -4 8 1522 22 0 0 0 chr1 122887217 122887239 -74308193 + AT_rich Low_complexity Low_complexity 1 22 0 8 1522 930 161 224 0 chr1 122887242 122887416 -74308016 - B3 SINE B2 -1 215 3 8 1522 1276 221 105 11 chr1 122887452 122887822 -74307610 - MTD LTR MaLR -14 405 1 8 1522 423 0 0 0 chr1 122888008 122888055 -74307377 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1522 296 48 24 0 chr1 122888055 122888097 -74307335 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1522 469 236 190 33 chr1 122888437 122888621 -74306811 + ID_B1 SINE B4 1 213 -11 8 1522 291 234 18 18 chr1 122888626 122888735 -74306697 + GA-rich Low_complexity Low_complexity 2 110 0 9 1522 456 19 0 0 chr1 122889245 122889298 -74306134 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1522 495 107 0 0 chr1 122889298 122889372 -74306060 + (TG)n Simple_repeat Simple_repeat 2 76 0 9 1522 680 255 72 69 chr1 122889749 122890040 -74305392 + B4A SINE B4 1 292 0 9 1522 219 294 0 0 chr1 122890040 122890091 -74305341 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1522 36182 35 4 0 chr1 122890566 122896021 -74299411 + L1Md_T LINE L1 14 5589 -297 9 1522 8982 7 8 0 chr1 122896021 122897009 -74298423 + L1Md_T LINE L1 5590 6585 0 9 1522 636 297 105 49 chr1 122897014 122897358 -74298074 - MTD LTR MaLR -44 375 13 9 1522 1105 82 14 0 chr1 122897721 122897867 -74297565 + B1_Mus1 SINE Alu 1 148 0 9 1522 287 32 78 31 chr1 122897869 122897933 -74297499 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 9 1522 461 226 123 104 chr1 122898068 122898280 -74297152 + B4A SINE B4 42 257 -35 9 1522 382 313 81 87 chr1 122899064 122899410 -74296022 + ORR1E LTR MaLR 4 347 -12 9 1522 602 326 70 59 chr1 122899738 122900025 -74295407 + B4 SINE B4 3 292 0 9 1522 255 236 43 43 chr1 122900866 122900959 -74294473 + MIRc SINE MIR 43 135 -133 9 1522 603 254 7 0 chr1 122901006 122901144 -74294288 + B3A SINE B2 2 140 -58 9 1522 221 30 0 57 chr1 122902170 122902205 -74293227 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1522 23 0 0 0 chr1 122902391 122902414 -74293018 + AT_rich Low_complexity Low_complexity 1 23 0 9 1522 225 0 0 0 chr1 122902502 122902527 -74292905 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1522 416 335 84 22 chr1 122903091 122903366 -74292066 + B4A SINE B4 1 292 0 9 1522 3282 67 4 28 chr1 122903537 122904010 -74291422 + RMER16 LTR ERVK 70 531 -2 9 1522 594 242 18 42 chr1 122904066 122904234 -74291198 - ORR1D2 LTR MaLR -12 358 195 9 1522 8442 40 2 0 chr1 122904396 122905400 -74290032 - L1Md_F2 LINE L1 0 6582 5587 9 1522 439 271 83 0 chr1 122905417 122905550 -74289882 - ORR1D2 LTR MaLR -168 202 59 9 1522 930 190 11 6 chr1 122905741 122905921 -74289511 + ORR1D1 LTR MaLR 1 181 -193 9 1522 660 175 0 0 chr1 122905921 122906047 -74289385 + CT-rich Low_complexity Low_complexity 5 130 0 9 1522 219 182 39 0 chr1 122906072 122906149 -74289283 + CT-rich Low_complexity Low_complexity 2 81 0 9 1522 725 251 78 6 chr1 122906164 122906344 -74289088 + ORR1D1 LTR MaLR 192 384 0 9 1522 360 200 0 0 chr1 122906413 122906493 -74288939 + CT-rich Low_complexity Low_complexity 2 81 0 9 1522 3110 288 90 23 chr1 122906516 122907346 -74288086 - Lx8 LINE L1 -6 7467 6566 9 1522 186 43 0 0 chr1 122907346 122907369 -74288063 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 9 1522 3110 288 90 23 chr1 122907369 122907720 -74287712 - Lx8 LINE L1 -908 6565 6207 9 1522 447 68 0 0 chr1 122907743 122907802 -74287630 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1522 1523 11 0 11 chr1 122908199 122908381 -74287051 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 9 1522 1011 112 0 0 chr1 122908381 122908533 -74286899 + (TC)n Simple_repeat Simple_repeat 1 152 0 9 1522 427 270 0 6 chr1 122908774 122908953 -74286479 + CT-rich Low_complexity Low_complexity 2 179 0 9 1522 895 276 39 25 chr1 122909864 122910146 -74285286 - B4A SINE B4 -6 286 1 9 1522 432 0 0 0 chr1 122910411 122910459 -74284973 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1522 288 0 0 0 chr1 122911044 122911076 -74284356 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1522 298 322 178 0 chr1 122911141 122911287 -74284145 - MT2A LTR ERVL -361 172 1 9 1522 669 158 0 0 chr1 122911295 122911415 -74284017 + (TA)n Simple_repeat Simple_repeat 2 121 0 9 1522 635 328 97 24 chr1 122912060 122912432 -74283000 - MTD LTR MaLR -3 416 18 9 1522 989 135 45 6 chr1 122912538 122912717 -74282715 + Lx2 LINE L1 6812 6997 0 9 1522 279 0 0 0 chr1 122912928 122912959 -74282473 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 9 1522 227 221 42 56 chr1 122913190 122913228 -74282204 - MTEa LTR MaLR -14 365 327 9 1522 5334 55 25 0 chr1 122913228 122913895 -74281537 + L1Md_F3 LINE L1 5900 6583 -1 9 1522 227 221 42 56 chr1 122913895 122913928 -74281504 - MTEa LTR MaLR -53 326 296 9 1522 518 318 23 0 chr1 122914157 122914289 -74281143 - RSINE1 SINE B4 -28 137 3 9 1522 925 264 93 44 chr1 122914605 122914949 -74280483 + MTD LTR MaLR 31 391 -28 9 1522 3914 152 105 7 chr1 122914949 122915647 -74279785 - Lx LINE L1 -14 6640 5875 9 1522 2048 164 8 14 chr1 122915622 122915992 -74279440 + Lx LINE L1 5502 5869 -14 9 1522 835 263 55 86 chr1 122916535 122916826 -74278606 + B4 SINE B4 4 285 -7 9 1522 708 12 0 0 chr1 122917075 122917156 -74278276 + (TTC)n Simple_repeat Simple_repeat 1 81 0 9 1522 1771 67 8 0 chr1 122917157 122917396 -74278036 - L1_Mus3 LINE L1 -1 6637 6397 9 1522 396 0 0 0 chr1 122918187 122918231 -74277201 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1522 202 204 40 20 chr1 122918231 122918281 -74277151 + (CATG)n Simple_repeat Simple_repeat 1 51 0 9 1522 261 233 78 63 chr1 122918746 122918888 -74276544 - RCHARR1 DNA MER1_type -825 149 6 9 1522 1541 270 90 30 chr1 122918978 122919548 -74275884 - RCHARR1 DNA MER1_type -28 946 357 9 1522 531 298 20 30 chr1 122919548 122919745 -74275687 + B3A SINE B2 4 198 0 9 1522 1541 314 56 27 chr1 122919745 122919967 -74275465 - RCHARR1 DNA MER1_type -618 356 1 9 1522 661 206 0 9 chr1 122920050 122920280 -74275152 + (CA)n Simple_repeat Simple_repeat 1 227 0 9 1522 331 325 15 54 chr1 122920969 122921099 -74274333 + B1_Mur1 SINE Alu 19 143 -6 9 1522 298 236 60 86 chr1 122921258 122921374 -74274058 + MTD LTR MaLR 293 405 -14 9 1522 315 0 0 0 chr1 122921787 122921822 -74273610 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1522 451 261 102 6 chr1 122921826 122921988 -74273444 - Lx8 LINE L1 -631 7013 6716 9 1522 845 151 0 7 chr1 122921991 122922144 -74273288 + GA-rich Low_complexity Low_complexity 3 154 0 9 1522 324 254 69 0 chr1 122922144 122922274 -74273158 + Lx8 LINE L1 7333 7471 -2 9 1522 398 228 63 11 chr1 122922288 122922397 -74273035 - B1F1 SINE Alu -3 114 1 9 1522 329 262 65 37 chr1 122922304 122922411 -74273021 - ID_B1 SINE B4 -48 176 67 9 1522 419 270 45 0 chr1 122922464 122922575 -74272857 + MTEa LTR MaLR 1 116 -263 9 1522 336 318 92 61 chr1 122922644 122922939 -74272493 + MT2A LTR ERVL 228 531 -2 9 1522 344 280 208 0 chr1 122923155 122923280 -74272152 - B3A SINE B2 -33 165 15 9 1522 677 237 63 68 chr1 122923739 122923929 -74271503 + B4 SINE B4 4 192 -100 9 1522 591 112 0 0 chr1 122923957 122924046 -74271386 + (GA)n Simple_repeat Simple_repeat 2 90 0 9 1522 237 139 0 0 chr1 122924174 122924217 -74271215 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1522 990 285 58 21 chr1 122924524 122924903 -74270529 - MTEa LTR MaLR -14 405 18 9 1522 754 233 18 6 chr1 122924912 122925076 -74270356 - MTEb LTR MaLR -94 285 120 9 1522 709 250 80 15 chr1 122925336 122925535 -74269897 - B3 SINE B2 -4 212 1 9 1522 1048 303 98 58 chr1 122925559 122926182 -74269250 - Lx8 LINE L1 -2 7471 6824 9 1522 187 190 17 17 chr1 122926796 122926855 -74268577 + (CATA)n Simple_repeat Simple_repeat 2 60 0 9 1522 236 246 33 0 chr1 122926929 122926990 -74268442 + L1M7 LINE L1 2150 2212 -4006 9 1522 424 197 39 86 chr1 122928289 122928417 -74267015 + MT2A LTR ERVL 1 122 -411 9 1522 314 179 0 0 chr1 122929499 122929555 -74265877 - B3A SINE B2 -142 56 1 9 1522 270 247 38 25 chr1 122929607 122929686 -74265746 - ID_B1 SINE B4 -92 132 53 9 1522 335 347 66 48 chr1 122930529 122930736 -74264696 + B4 SINE B4 56 269 -23 9 1522 378 0 0 0 chr1 122930736 122930778 -74264654 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1522 230 307 52 17 chr1 122931842 122931958 -74263474 + L1M5 LINE L1 5471 5590 -534 9 1522 36065 36 1 0 chr1 122932231 122937501 -74257931 + L1Md_T LINE L1 220 5589 -297 9 1522 9132 8 0 0 chr1 122937501 122938497 -74256935 + L1Md_T LINE L1 5590 6585 0 9 1522 216 0 0 0 chr1 122938524 122938548 -74256884 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1522 668 240 96 48 chr1 122938598 122938786 -74256646 - B3A SINE B2 -1 197 1 9 1522 767 306 14 5 chr1 122938851 122939068 -74256364 + ID_B1 SINE B4 3 221 -3 9 1522 227 308 69 82 chr1 122939211 122939444 -74255988 + MIRb SINE MIR 34 263 -5 9 1522 757 300 37 40 chr1 122940225 122940558 -74254874 + MTE2b LTR MaLR 40 379 0 9 1522 2060 118 12 64 chr1 122940641 122940985 -74254447 - ORR1A3 LTR MaLR 0 326 1 9 1522 423 0 0 0 chr1 122941092 122941139 -74254293 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1522 279 206 172 11 chr1 122941503 122941596 -74253836 + MER5A1 DNA MER1_type 59 166 0 9 1522 672 290 63 29 chr1 122941692 122941898 -74253534 + B4A SINE B4 4 216 -76 9 1522 487 272 184 20 chr1 122941906 122942150 -74253282 + B4A SINE B4 2 285 -7 9 1522 214 262 16 16 chr1 122942153 122942215 -74253217 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1522 258 271 29 0 chr1 122942223 122942293 -74253139 + B4A SINE B4 221 292 0 9 1522 2007 180 148 20 chr1 122942374 122942861 -74252571 - RMER15 LTR ERVL 0 575 27 9 1522 254 212 14 43 chr1 122942862 122942931 -74252501 - RMER15 LTR ERVL -508 67 1 9 1522 192 77 0 0 chr1 122943594 122943620 -74251812 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1522 293 328 71 49 chr1 122944391 122944639 -74250793 + B4 SINE B4 3 292 0 9 1522 268 163 0 65 chr1 122944699 122944791 -74250641 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 9 1522 1028 205 65 4 chr1 122944919 122945149 -74250283 - MTC LTR MaLR -177 244 1 9 1522 550 100 0 55 chr1 122945355 122945482 -74249950 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 9 1523 749 274 84 0 chr1 122945577 122945767 -74249665 - ID_B1 SINE B4 -18 206 1 9 1523 386 298 91 8 chr1 122945977 122946109 -74249323 + MTEb LTR MaLR 3 145 -234 9 1523 938 189 29 19 chr1 122946774 122946984 -74248448 + MTEb LTR MaLR 160 371 -8 9 1523 244 291 177 0 chr1 122946990 122947148 -74248284 - MIRb SINE MIR -62 206 21 9 1523 192 77 0 0 chr1 122947774 122947800 -74247632 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 9 1523 589 326 59 0 chr1 122949167 122949388 -74246044 + B4A SINE B4 1 234 -58 9 1523 336 24 0 0 chr1 122949408 122949449 -74245983 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1523 694 229 94 0 chr1 122949479 122949649 -74245783 + Lx8 LINE L1 7214 7399 -74 1 1523 253 261 109 0 chr1 122949726 122949818 -74245614 + MER2 DNA MER2_type 76 177 -168 1 1523 341 229 391 23 chr1 122950088 122950208 -74245224 - B3A SINE B2 -1 197 34 1 1523 229 222 24 12 chr1 122951112 122951194 -74244238 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1523 739 274 92 13 chr1 122951218 122951447 -74243985 - B4A SINE B4 -45 247 1 1 1523 661 168 7 74 chr1 122951634 122951782 -74243650 + B3A SINE B2 1 138 -60 1 1523 478 280 131 0 chr1 122951896 122952064 -74243368 - B4A SINE B4 -62 230 41 1 1523 230 298 123 19 chr1 122952097 122952203 -74243229 - MLT1G1 LTR MaLR -30 549 433 1 1523 842 241 138 10 chr1 122952387 122952676 -74242756 - MTD LTR MaLR -36 383 58 1 1523 1096 158 13 60 chr1 122952733 122952968 -74242464 + ORR1C1 LTR MaLR 127 350 -28 1 1523 222 290 0 0 chr1 122953693 122953786 -74241646 + (TG)n Simple_repeat Simple_repeat 1 93 0 1 1523 246 196 0 0 chr1 122953845 122953891 -74241541 - B3A SINE B2 -152 46 1 1 1523 639 264 28 37 chr1 122953899 122954115 -74241317 - ID_B1 SINE B4 -7 217 4 1 1523 796 284 10 0 chr1 122954643 122954851 -74240581 - MTEa LTR MaLR -8 371 162 1 1523 661 230 39 19 chr1 122954898 122955053 -74240379 - B3A SINE B2 -38 160 3 1 1523 819 243 5 16 chr1 122955053 122955236 -74240196 - MTEa LTR MaLR -198 181 1 1 1523 462 279 26 5 chr1 122955236 122955401 -74240031 - MTEa-int LTR MaLR 0 1580 1394 1 1523 189 180 0 0 chr1 122955725 122955775 -74239657 + T-rich Low_complexity Low_complexity 1 50 0 1 1523 182 192 0 19 chr1 122955816 122955869 -74239563 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1523 275 340 10 0 chr1 122955948 122956045 -74239387 - RMER15 LTR ERVL -107 468 371 1 1523 453 327 27 64 chr1 122956352 122956649 -74238783 + B4A SINE B4 1 286 -6 1 1523 360 233 0 14 chr1 122956713 122956787 -74238645 + ID4_ SINE ID 5 77 -6 1 1523 360 0 0 0 chr1 122957592 122957632 -74237800 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1523 309 82 0 0 chr1 122958024 122958073 -74237359 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1523 446 259 43 8 chr1 122958090 122958207 -74237225 - RSINE1 SINE B4 -43 122 2 1 1523 993 179 71 10 chr1 122958416 122958613 -74236819 - B3 SINE B2 -7 209 1 1 1523 665 269 47 154 chr1 122958638 122959060 -74236372 + MTE2a LTR MaLR 3 379 0 1 1523 504 0 0 0 chr1 122959490 122959546 -74235886 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1523 211 179 265 15 chr1 122959550 122959618 -74235814 - RSINE1 SINE B4 -76 89 5 1 1523 799 238 203 3 chr1 122959628 122959928 -74235504 + ORR1D1 LTR MaLR 15 374 0 1 1523 222 150 0 0 chr1 122960477 122960517 -74234915 + (GGA)n Simple_repeat Simple_repeat 3 42 0 1 1523 414 282 81 72 chr1 122960636 122960858 -74234574 + RMER15 LTR ERVL 336 559 -16 1 1523 416 256 40 40 chr1 122961098 122961224 -74234208 + L1MC5 LINE L1 6681 6806 -1155 1 1523 545 271 18 66 chr1 122961808 122961974 -74233458 - B3A SINE B2 0 198 41 1 1523 443 282 130 80 chr1 122962229 122962323 -74233109 - RMER15 LTR ERVL 0 575 488 1 1523 1283 122 21 0 chr1 122962323 122962512 -74232920 + B2_Mm2 SINE B2 1 193 -2 1 1523 443 282 130 80 chr1 122962512 122962656 -74232776 - RMER15 LTR ERVL -88 487 325 1 1523 352 260 227 22 chr1 122963045 122963230 -74232202 - MLT1F2 LTR MaLR 0 560 338 1 1523 1599 140 93 91 chr1 122963254 122963607 -74231825 + ORR1B1 LTR MaLR 41 394 0 1 1523 380 323 30 69 chr1 122963612 122963815 -74231617 - MLT1F2 LTR MaLR -229 331 137 1 1523 387 0 0 0 chr1 122963997 122964040 -74231392 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1523 573 269 34 3 chr1 122964121 122964275 -74231157 + B3A SINE B2 3 156 -42 1 1523 432 37 0 0 chr1 122964275 122964329 -74231103 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1523 349 286 31 82 chr1 122964329 122964368 -74231064 + B2_Mm2 SINE B2 151 186 -9 1 1523 1155 224 9 115 chr1 122964929 122965162 -74230270 + B4 SINE B4 2 218 -74 1 1523 646 312 77 19 chr1 122965162 122965423 -74230009 + B4A SINE B4 1 276 -16 1 1523 1155 224 9 115 chr1 122965423 122965512 -74229920 + B4 SINE B4 219 290 -2 1 1523 257 155 0 27 chr1 122965534 122965607 -74229825 + (CAGAGA)n Simple_repeat Simple_repeat 6 76 0 1 1523 363 236 204 64 chr1 122966444 122966679 -74228753 + B4A SINE B4 5 272 -20 1 1523 270 0 0 0 chr1 122967075 122967105 -74228327 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1 1523 491 307 6 44 chr1 122967470 122967630 -74227802 + RSINE1 SINE B4 12 165 0 1 1523 324 234 13 0 chr1 122967771 122967848 -74227584 + RSINE1 SINE B4 3 80 -85 1 1523 1096 234 19 8 chr1 122968072 122968339 -74227093 - B4 SINE B4 -15 277 8 1 1523 234 0 0 0 chr1 122968372 122968398 -74227034 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 1 1523 432 0 0 0 chr1 122968398 122968446 -74226986 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1523 707 264 6 6 chr1 122968461 122968621 -74226811 - B3A SINE B2 -38 160 1 1 1523 516 318 27 13 chr1 122968865 122969015 -74226417 + RSINE1 SINE B4 1 152 -13 1 1523 264 91 0 0 chr1 122969028 122969072 -74226360 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1523 1044 79 0 0 chr1 122969082 122969234 -74226198 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 1 1523 350 227 0 0 chr1 122969451 122969532 -74225900 - B4 SINE B4 -211 81 1 1 1523 369 0 0 0 chr1 122969726 122969767 -74225665 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1523 528 239 22 51 chr1 122969837 122969974 -74225458 - B4 SINE B4 -73 219 87 1 1523 592 302 10 50 chr1 122970250 122970418 -74225014 + ID_B1 SINE B4 3 162 -62 1 1523 431 322 57 101 chr1 122970418 122970769 -74224663 + MTE2a LTR MaLR 1 345 -74 1 1523 591 53 0 0 chr1 122970822 122970897 -74224535 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1 1523 611 292 5 106 chr1 122970968 122971186 -74224246 - B3A SINE B2 0 198 3 1 1523 296 167 45 0 chr1 122971688 122971754 -74223678 - MER121 Unknown Unknown -194 218 150 1 1523 535 280 13 26 chr1 122972422 122972576 -74222856 + B4A SINE B4 2 153 -139 1 1523 517 228 52 33 chr1 122972655 122972867 -74222565 + ORR1D2 LTR MaLR 73 344 -26 1 1523 1489 278 39 75 chr1 122972878 122973450 -74221982 - Lx6 LINE L1 -1 7459 6554 1 1523 561 255 158 11 chr1 122973554 122973744 -74221688 + B4 SINE B4 3 220 -72 1 1523 308 186 0 33 chr1 122973754 122973815 -74221617 + B1_Mus2 SINE Alu 1 59 -88 1 1523 214 0 0 157 chr1 122973816 122973918 -74221514 + (CAGAG)n Simple_repeat Simple_repeat 5 90 0 1 1523 597 126 9 28 chr1 122973921 122974027 -74221405 + B1_Mm SINE Alu 42 145 -2 1 1523 407 263 28 124 chr1 122974027 122974099 -74221333 + B4 SINE B4 127 287 -5 1 1523 603 0 0 0 chr1 122974099 122974166 -74221266 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1523 664 247 209 49 chr1 122974510 122974825 -74220607 + MTD LTR MaLR 1 419 -2 1 1523 357 206 49 49 chr1 122975208 122975310 -74220122 - B4A SINE B4 -4 288 187 1 1523 1450 231 57 3 chr1 122975683 122976034 -74219398 + MTEa LTR MaLR 4 373 -6 1 1523 494 301 46 0 chr1 122976270 122976423 -74219009 + B3A SINE B2 1 160 -38 1 1523 423 0 0 0 chr1 122976424 122976471 -74218961 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1523 303 96 0 0 chr1 122976471 122976523 -74218909 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1523 974 166 0 67 chr1 122976907 122977101 -74218331 + URR1B DNA MER1_type 1 181 -44 1 1523 276 256 39 47 chr1 122977380 122977507 -74217925 + RMER15 LTR ERVL 336 461 -114 1 1523 270 227 30 15 chr1 122977529 122977596 -74217836 - MTE2a LTR MaLR -17 362 295 1 1523 1159 209 8 28 chr1 122977597 122977848 -74217584 + ORR1A1 LTR MaLR 1 246 -100 1 1523 266 328 114 8 chr1 122977842 122977974 -74217458 + B4 SINE B4 129 274 -18 1 1523 352 340 40 7 chr1 122978244 122978392 -74217040 - RSINE1 SINE B4 -11 154 2 1 1523 315 246 0 14 chr1 122978692 122978766 -74216666 - B4A SINE B4 -4 288 216 1 1523 475 226 118 84 chr1 122978846 122979083 -74216349 - B4A SINE B4 -27 265 21 1 1523 288 298 90 19 chr1 122979079 122979208 -74216224 - B4 SINE B4 -109 183 47 1 1523 180 171 0 0 chr1 122979262 122979297 -74216135 + MIR SINE MIR 81 115 -93 1 1523 383 282 137 43 chr1 122979838 122980049 -74215383 + B4 SINE B4 3 233 -59 1 1523 525 328 71 67 chr1 122980052 122980335 -74215097 + B4 SINE B4 9 281 -11 1 1523 191 36 0 35 chr1 122980350 122980379 -74215053 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1523 877 70 37 16 chr1 122980390 122980641 -74214791 + (TAGA)n Simple_repeat Simple_repeat 1 256 0 1 1523 632 250 138 63 chr1 122981305 122981535 -74213897 + B4A SINE B4 4 264 -28 1 1523 528 59 0 0 chr1 122981535 122981603 -74213829 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1523 632 250 138 63 chr1 122981603 122981641 -74213791 + B4A SINE B4 265 292 0 1 1523 394 224 0 0 chr1 122982237 122982313 -74213119 + B4A SINE B4 1 76 -216 1 1523 450 0 0 0 chr1 122982314 122982364 -74213068 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1523 198 0 0 0 chr1 122982550 122982572 -74212860 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1523 441 0 0 0 chr1 122982951 122983000 -74212432 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1523 474 281 87 6 chr1 122983070 122983231 -74212201 - B4A SINE B4 -117 175 2 1 1523 306 0 0 0 chr1 122983696 122983730 -74211702 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 1 1523 1110 240 78 20 chr1 122985057 122985406 -74210026 + MTD LTR MaLR 6 404 -15 1 1523 322 291 0 0 chr1 122985472 122985551 -74209881 + MER58A DNA MER1_type 42 120 -104 1 1523 459 0 0 0 chr1 122985806 122985857 -74209575 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1523 414 0 0 0 chr1 122985857 122985902 -74209530 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1523 713 249 18 30 chr1 122985975 122986141 -74209291 + Lx8 LINE L1 6573 6736 -737 1 1523 360 0 0 0 chr1 122986545 122986585 -74208847 + (TTAG)n Simple_repeat Simple_repeat 3 42 0 1 1523 226 203 39 51 chr1 122986634 122986712 -74208720 - MTEb LTR MaLR -28 351 275 1 1523 266 271 6 44 chr1 122987020 122987178 -74208254 + GA-rich Low_complexity Low_complexity 1 152 0 1 1523 817 214 99 0 chr1 122987192 122987393 -74208039 - ID_B1 SINE B4 -1 223 3 1 1523 609 290 54 0 chr1 122987612 122987798 -74207634 + B3A SINE B2 2 197 -1 1 1523 356 335 147 19 chr1 122988126 122988385 -74207047 + B4A SINE B4 1 292 0 1 1523 318 337 34 85 chr1 122989001 122989329 -74206103 - Lx8 LINE L1 -8 7465 7155 1 1523 878 310 72 54 chr1 122989374 122989872 -74205560 + MLT1G1 LTR MaLR 71 577 -2 1 1523 223 312 45 98 chr1 122989966 122990211 -74205221 + L2a LINE L2 3194 3425 -1 1 1523 207 362 11 0 chr1 122990378 122990472 -74204960 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1523 588 317 38 19 chr1 122990480 122990747 -74204685 - B4A SINE B4 -16 276 5 1 1523 232 281 62 0 chr1 122990864 122990928 -74204504 - MLT1A1 LTR MaLR -54 354 287 1 1523 273 242 0 0 chr1 122991027 122991089 -74204343 - 4.5SRNA scRNA scRNA -32 62 1 1 1523 339 216 26 0 chr1 122991235 122991351 -74204081 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1523 294 29 0 0 chr1 122991409 122991444 -74203988 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1523 710 285 0 0 chr1 122991446 122991597 -74203835 - RSINE1 SINE B4 -12 153 3 1 1523 226 204 0 0 chr1 122993377 122993421 -74202011 + G-rich Low_complexity Low_complexity 1 44 0 1 1523 21 0 0 0 chr1 122994183 122994204 -74201228 + AT_rich Low_complexity Low_complexity 1 21 0 1 1523 209 179 0 60 chr1 122994729 122994812 -74200620 + GA-rich Low_complexity Low_complexity 4 81 0 1 1523 232 245 19 0 chr1 122994844 122994897 -74200535 + GA-rich Low_complexity Low_complexity 4 57 0 1 1523 428 207 0 22 chr1 122995113 122995202 -74200230 - ID_B1 SINE B4 -25 199 113 1 1523 451 320 75 25 chr1 122995283 122995523 -74199909 - B4A SINE B4 -5 287 36 1 1523 441 54 0 0 chr1 122996403 122996459 -74198973 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1523 664 244 149 60 chr1 122996472 122996721 -74198711 - B4A SINE B4 -20 272 2 1 1523 384 22 0 0 chr1 122997339 122997384 -74198048 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1523 535 346 7 0 chr1 122997434 122997587 -74197845 - RSINE1 SINE B4 -11 154 1 1 1523 482 338 12 30 chr1 122997649 122997814 -74197618 - RSINE1 SINE B4 -1 164 3 1 1523 270 0 0 0 chr1 122997941 122997971 -74197461 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1523 414 0 0 0 chr1 122998382 122998428 -74197004 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1523 482 319 50 32 chr1 122998486 122998765 -74196667 - B4A SINE B4 -8 284 1 1 1523 765 269 5 20 chr1 122999363 122999564 -74195868 - B3A SINE B2 0 198 1 1 1523 231 144 32 16 chr1 122999604 122999660 -74195772 - B1F1 SINE Alu -31 118 32 1 1523 188 309 29 14 chr1 122999756 122999825 -74195607 + L2b LINE L2 3305 3374 -1 1 1523 241 299 101 16 chr1 123000049 123000178 -74195254 - MLT1A1 LTR MaLR 0 408 269 1 1523 1188 256 54 49 chr1 123000763 123001149 -74194283 - MTD LTR MaLR -31 388 1 2 1523 341 269 127 6 chr1 123001399 123001556 -74193876 + MLT1F1 LTR MaLR 5 180 -389 3 1523 476 322 43 5 chr1 123001645 123001829 -74193603 + MLT1F1 LTR MaLR 350 540 -29 3 1523 366 248 0 71 chr1 123002344 123002457 -74192975 - L1MA10 LINE L1 -50 6284 6180 4 1523 390 323 14 36 chr1 123002552 123002690 -74192742 + RSINE1 SINE B4 6 140 -25 5 1523 407 125 14 0 chr1 123002703 123002775 -74192657 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 6 1523 24 32 0 0 chr1 123002815 123002846 -74192586 + AT_rich Low_complexity Low_complexity 1 31 0 7 1523 756 242 116 0 chr1 123002849 123003039 -74192393 + B3 SINE B2 1 212 -4 8 1523 960 86 17 0 chr1 123003345 123003520 -74191912 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 9 1523 222 116 0 0 chr1 123003520 123003562 -74191870 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1523 398 327 109 98 chr1 123004517 123004802 -74190630 + B4A SINE B4 3 290 -2 1 1523 1242 272 32 24 chr1 123004976 123005352 -74190080 + MTEb LTR MaLR 1 379 0 1 1523 233 233 16 32 chr1 123005363 123005425 -74190007 - RLTR20B1 LTR ERVK 0 563 503 1 1523 996 133 0 0 chr1 123005427 123005607 -74189825 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1523 858 143 0 0 chr1 123005650 123005825 -74189607 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1523 924 158 0 3 chr1 123005844 123006199 -74189233 + (CA)n Simple_repeat Simple_repeat 1 354 0 1 1523 2511 185 6 8 chr1 123006227 123006702 -74188730 - RLTR20B1 LTR ERVK -89 474 1 1 1523 255 273 170 14 chr1 123006734 123006875 -74188557 + Charlie8 DNA MER1_type 103 265 -2163 1 1523 538 251 66 82 chr1 123006987 123007169 -74188263 + B3A SINE B2 4 182 -16 1 1523 482 269 35 132 chr1 123007453 123007650 -74187782 + B4 SINE B4 50 227 -65 1 1523 513 299 81 40 chr1 123007650 123007805 -74187627 + B3A SINE B2 1 166 -32 1 1523 222 116 0 0 chr1 123007805 123007848 -74187584 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 1523 877 85 22 22 chr1 123007849 123008029 -74187403 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1523 513 299 81 40 chr1 123008029 123008045 -74187387 + B3A SINE B2 167 181 -17 1 1523 291 141 39 0 chr1 123008047 123008125 -74187307 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1523 329 169 14 14 chr1 123008174 123008246 -74187186 + HAL1-3A_ME LINE L1 1976 2047 -811 2 1523 441 0 0 0 chr1 123009629 123009678 -74185754 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1523 373 308 91 70 chr1 123009718 123010004 -74185428 - B4A SINE B4 0 292 1 2 1523 539 288 85 53 chr1 123010218 123010500 -74184932 + B4 SINE B4 2 292 0 2 1523 376 294 48 0 chr1 123010759 123010905 -74184527 - Tigger12c DNA MER2_type -15 719 567 2 1523 553 291 129 34 chr1 123011198 123011461 -74183971 - RMER15 LTR ERVL -14 561 274 2 1523 464 205 30 45 chr1 123011491 123011624 -74183808 - RMER15 LTR ERVL -444 131 1 2 1523 411 68 0 0 chr1 123011932 123011991 -74183441 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1523 405 0 0 0 chr1 123011993 123012038 -74183394 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1523 825 274 95 4 chr1 123012039 123012292 -74183140 - B4A SINE B4 -16 276 1 3 1523 209 108 27 0 chr1 123012862 123012899 -74182533 + (GGAGA)n Simple_repeat Simple_repeat 4 41 0 3 1523 377 307 83 28 chr1 123013146 123013327 -74182105 - MIRc SINE MIR -76 192 2 3 1523 347 275 25 0 chr1 123015566 123015646 -74179786 + ID4 SINE ID 2 83 0 3 1523 597 140 20 0 chr1 123015654 123015804 -74179628 + (TAGA)n Simple_repeat Simple_repeat 3 155 0 3 1523 654 285 65 16 chr1 123016715 123016986 -74178446 + ORR1E LTR MaLR 1 295 -64 3 1523 258 125 20 20 chr1 123017086 123017135 -74178297 + RMER30 DNA MER1_type 7 55 -147 3 1523 404 305 8 0 chr1 123017217 123017335 -74178097 + Tigger5 DNA MER2_type 6 124 -2282 3 1523 311 231 54 36 chr1 123017376 123017488 -74177944 + Tigger5 DNA MER2_type 2293 2406 0 3 1523 245 196 20 0 chr1 123017535 123017586 -74177846 + CT-rich Low_complexity Low_complexity 3 54 0 3 1523 269 256 81 131 chr1 123018469 123018506 -74176926 - B2_Mm2 SINE B2 -3 192 165 3 1523 354 100 0 0 chr1 123018506 123018566 -74176866 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1523 465 256 81 131 chr1 123018566 123018726 -74176706 - B3A SINE B2 -31 164 5 3 1523 708 12 0 0 chr1 123018736 123018817 -74176615 + (GGA)n Simple_repeat Simple_repeat 2 82 0 4 1523 537 256 7 35 chr1 123018820 123018962 -74176470 + B4 SINE B4 13 150 -142 4 1523 305 270 0 0 chr1 123018976 123019050 -74176382 + B4A SINE B4 217 290 -2 4 1523 215 294 82 0 chr1 123020478 123020563 -74174869 - MIRc SINE MIR -12 256 165 4 1523 288 0 0 0 chr1 123020658 123020690 -74174742 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 4 1523 536 241 161 41 chr1 123020761 123021003 -74174429 - B4A SINE B4 -18 274 4 4 1523 198 140 34 34 chr1 123021832 123021891 -74173541 + GA-rich Low_complexity Low_complexity 3 61 0 4 1523 228 234 21 11 chr1 123021924 123022019 -74173413 + GA-rich Low_complexity Low_complexity 2 97 0 4 1523 241 292 0 0 chr1 123022990 123023062 -74172370 + B4A SINE B4 2 73 -219 4 1523 709 256 64 20 chr1 123023031 123023234 -74172198 - MTE2b LTR MaLR -166 213 2 4 1523 411 193 0 0 chr1 123023352 123023440 -74171992 + GA-rich Low_complexity Low_complexity 1 88 0 4 1523 405 0 0 0 chr1 123024270 123024315 -74171117 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1523 682 259 164 8 chr1 123024328 123024566 -74170866 - B4A SINE B4 -17 275 1 5 1523 1215 248 104 9 chr1 123025148 123025494 -74169938 - MTEa LTR MaLR 0 379 1 5 1523 656 183 0 27 chr1 123026288 123026473 -74168959 + GA-rich Low_complexity Low_complexity 1 180 0 5 1523 291 167 0 0 chr1 123026645 123026711 -74168721 + GA-rich Low_complexity Low_complexity 1 66 0 5 1523 258 291 23 23 chr1 123027378 123027466 -74167966 - MIR3 SINE MIR -3 205 118 5 1523 187 157 39 0 chr1 123028370 123028421 -74167011 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1523 477 50 0 0 chr1 123029002 123029062 -74166370 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1523 799 238 6 6 chr1 123029471 123029644 -74165788 + B3A SINE B2 1 173 -25 5 1523 288 0 0 0 chr1 123029644 123029676 -74165756 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1523 528 93 0 0 chr1 123029801 123029876 -74165556 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1523 392 35 35 0 chr1 123029877 123029934 -74165498 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 6 1523 699 212 265 0 chr1 123029966 123030136 -74165296 + B3 SINE B2 2 216 0 6 1523 796 278 19 19 chr1 123030140 123030353 -74165079 - ID_B1 SINE B4 -10 214 2 6 1523 1407 195 55 31 chr1 123030518 123030911 -74164521 + RMER16 LTR ERVK 1 533 0 6 1523 458 359 62 28 chr1 123030911 123031267 -74164165 - MTD LTR MaLR -51 368 1 6 1523 323 265 32 64 chr1 123031507 123031632 -74163800 - RMER30 DNA MER1_type -1 201 81 6 1523 477 308 116 33 chr1 123031736 123031898 -74163534 - B4A SINE B4 -6 286 105 6 1523 459 0 0 0 chr1 123031898 123031949 -74163483 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1523 448 41 55 0 chr1 123031950 123032023 -74163409 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 6 1523 477 308 116 33 chr1 123032023 123032073 -74163359 - B4A SINE B4 -188 104 54 6 1523 810 274 113 45 chr1 123032209 123032545 -74162887 - ORR1E LTR MaLR 0 359 1 7 1523 323 345 45 28 chr1 123032604 123032783 -74162649 - B4A SINE B4 -87 205 24 7 1523 291 328 70 35 chr1 123033881 123034080 -74161352 - MLT1C LTR MaLR -43 424 219 7 1523 210 37 0 0 chr1 123034308 123034335 -74161097 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1523 1115 15 0 0 chr1 123034341 123034476 -74160956 - L1Md_A LINE L1 -1 6581 6447 7 1523 2330 8 4 0 chr1 123034476 123034733 -74160699 + L1Md_A LINE L1 6189 6446 -136 7 1523 580 307 79 5 chr1 123034908 123035111 -74160321 - ID_B1 SINE B4 -5 219 2 7 1523 1178 192 9 0 chr1 123035239 123035458 -74159974 - URR1B DNA MER1_type 0 225 5 7 1523 639 294 76 25 chr1 123035812 123036088 -74159344 - B4 SINE B4 -2 290 1 7 1523 860 204 96 10 chr1 123036119 123036317 -74159115 + B3 SINE B2 2 216 0 7 1523 1007 234 43 10 chr1 123036377 123036584 -74158848 - B3 SINE B2 -2 214 1 7 1523 187 280 169 34 chr1 123036618 123036766 -74158666 - MIRb SINE MIR -51 217 50 8 1523 2639 222 57 12 chr1 123036905 123037502 -74157930 + Lx6 LINE L1 6823 7446 -14 8 1523 1123 285 34 70 chr1 123037522 123037934 -74157498 - Lx6 LINE L1 -27 7433 7037 8 1523 194 62 31 0 chr1 123037965 123037997 -74157435 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1523 5082 141 4 19 chr1 123038058 123038889 -74156543 + Lx2 LINE L1 6180 6997 0 8 1523 845 288 87 16 chr1 123039004 123039325 -74156107 - MTD LTR MaLR -55 364 21 8 1523 303 28 0 0 chr1 123039439 123039475 -74155957 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1523 1070 187 80 0 chr1 123040177 123040402 -74155030 - MTEa LTR MaLR -5 374 132 8 1523 1607 157 25 93 chr1 123040450 123040815 -74154617 + ORR1B1 LTR MaLR 30 369 -25 8 1523 530 257 114 0 chr1 123040811 123040951 -74154481 - MTD LTR MaLR -68 351 196 8 1523 192 152 0 0 chr1 123040951 123040984 -74154448 + T-rich Low_complexity Low_complexity 1 33 0 9 1523 198 0 0 0 chr1 123041058 123041080 -74154352 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1523 763 10 10 10 chr1 123041140 123041237 -74154195 + (GA)n Simple_repeat Simple_repeat 2 98 0 9 1523 441 0 0 0 chr1 123041563 123041612 -74153820 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1523 734 285 57 16 chr1 123041669 123041915 -74153517 + B4A SINE B4 31 286 -6 9 1523 516 72 0 0 chr1 123041970 123042039 -74153393 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1523 326 250 105 72 chr1 123042212 123042470 -74152962 + L1M4 LINE L1 5069 5343 -803 9 1523 322 254 26 17 chr1 123042512 123042628 -74152804 - Lx6 LINE L1 -6 7454 7338 9 1523 186 43 0 0 chr1 123042650 123042673 -74152759 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 9 1523 1830 109 39 66 chr1 123042674 123043009 -74152423 - Lx LINE L1 -5 6649 6324 9 1523 858 252 48 0 chr1 123043009 123043219 -74152213 + Lx6 LINE L1 7092 7311 -149 1 1523 360 251 58 24 chr1 123043219 123043357 -74152075 - MTD LTR MaLR -209 210 74 8 1523 1339 217 53 3 chr1 123043355 123043656 -74151776 - MTD LTR MaLR -103 316 1 1 1523 446 295 0 0 chr1 123043706 123043828 -74151604 - MTD LTR MaLR -257 122 1 8 1523 867 293 15 19 chr1 123044056 123044327 -74151105 + B4A SINE B4 5 274 -18 1 1523 501 97 0 0 chr1 123044364 123044436 -74150996 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1523 2342 211 20 42 chr1 123044505 123044544 -74150888 - RCHARR1 DNA MER1_type -15 959 927 1 1523 180 0 0 0 chr1 123044544 123044564 -74150868 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1523 2342 211 20 42 chr1 123044564 123045137 -74150295 - RCHARR1 DNA MER1_type -48 926 361 1 1523 1925 128 33 60 chr1 123045159 123045526 -74149906 - ORR1C1 LTR MaLR -15 363 7 1 1523 414 333 63 23 chr1 123045540 123045715 -74149717 - B3A SINE B2 -16 182 1 1 1523 1010 275 101 17 chr1 123045720 123046016 -74149416 - RCHARR1 DNA MER1_type -605 369 49 1 1523 900 124 0 0 chr1 123046303 123046481 -74148951 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 1523 225 0 0 0 chr1 123046484 123046509 -74148923 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1523 255 31 0 0 chr1 123046549 123046581 -74148851 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1523 845 238 94 24 chr1 123046654 123046908 -74148524 - B4 SINE B4 -19 273 2 1 1523 761 297 81 7 chr1 123047518 123047803 -74147629 - MT2A LTR ERVL -1 532 227 1 1523 249 163 0 0 chr1 123047807 123047856 -74147576 + (CAT)n Simple_repeat Simple_repeat 2 50 0 1 1523 797 282 67 18 chr1 123048869 123049151 -74146281 + Lx7 LINE L1 5614 5909 -1787 1 1523 909 216 26 52 chr1 123049334 123049563 -74145869 + B4 SINE B4 1 223 -69 1 1523 243 170 0 0 chr1 123049577 123049624 -74145808 + GA-rich Low_complexity Low_complexity 3 49 0 1 1523 903 174 0 0 chr1 123049655 123049833 -74145599 + GA-rich Low_complexity Low_complexity 3 180 0 1 1523 207 276 0 0 chr1 123049901 123049977 -74145455 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1523 738 305 10 5 chr1 123050371 123050572 -74144860 + B4A SINE B4 2 203 -89 1 1523 407 329 0 43 chr1 123050585 123050747 -74144685 + RSINE1 SINE B4 5 159 -6 1 1523 345 176 0 0 chr1 123050866 123050940 -74144492 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1523 426 296 12 0 chr1 123052249 123052411 -74143021 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 1523 938 284 12 31 chr1 123052484 123052742 -74142690 - B4 SINE B4 -5 287 35 1 1523 491 224 141 0 chr1 123053496 123053652 -74141780 - MT2A LTR ERVL -9 524 347 1 1523 278 306 15 53 chr1 123053684 123053815 -74141617 - MT2A LTR ERVL -344 189 64 1 1523 365 317 35 40 chr1 123053729 123053903 -74141529 - MTD LTR MaLR -241 178 6 1 1523 450 0 0 0 chr1 123054682 123054732 -74140700 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1523 493 250 51 17 chr1 123054837 123054955 -74140477 - B3A SINE B2 -45 153 32 1 1523 231 274 14 14 chr1 123055693 123055767 -74139665 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1523 375 259 8 111 chr1 123055786 123055912 -74139520 - B4 SINE B4 -2 290 178 1 1523 306 68 0 0 chr1 123056015 123056059 -74139373 - HAL1-3A_ME LINE L1 -840 2018 1975 1 1523 489 121 0 0 chr1 123056098 123056181 -74139251 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1523 704 269 11 28 chr1 123056187 123056367 -74139065 - B4 SINE B4 -112 180 4 1 1523 222 286 0 0 chr1 123057351 123057414 -74138018 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 1 1523 198 143 0 0 chr1 123057418 123057453 -74137979 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1523 291 93 0 0 chr1 123057506 123057549 -74137883 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 1523 399 317 164 16 chr1 123057625 123057869 -74137563 - MLT2F LTR ERVL -43 620 341 1 1523 321 271 0 14 chr1 123057912 123057983 -74137449 + B4 SINE B4 11 80 -212 1 1523 9237 1 0 0 chr1 123058022 123059326 -74136106 - L1Md_A LINE L1 0 6582 5278 1 1523 506 281 0 9 chr1 123059349 123059464 -74135968 + B4 SINE B4 103 216 -76 1 1523 387 0 0 0 chr1 123059484 123059527 -74135905 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1523 387 0 0 0 chr1 123060086 123060129 -74135303 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1523 349 275 36 44 chr1 123060133 123060270 -74135162 + B4A SINE B4 149 284 -8 1 1523 910 306 14 44 chr1 123060692 123060989 -74134443 - B4 SINE B4 -4 288 1 1 1523 389 328 30 15 chr1 123061329 123061462 -74133970 - B4A SINE B4 -59 233 99 1 1523 216 322 34 11 chr1 123061384 123061472 -74133960 - B1F SINE Alu -57 92 3 1 1523 333 0 0 0 chr1 123061538 123061575 -74133857 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1523 269 220 0 0 chr1 123062121 123062180 -74133252 + ID4 SINE ID 2 60 -23 1 1523 180 179 0 0 chr1 123062181 123062220 -74133212 + GA-rich Low_complexity Low_complexity 4 42 0 1 1523 803 56 24 16 chr1 123062221 123062348 -74133084 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 1 1523 639 208 0 17 chr1 123062349 123062407 -74133025 + polypurine Low_complexity Low_complexity 1 55 0 1 1523 303 28 0 0 chr1 123062407 123062443 -74132989 + (GGGAA)n Simple_repeat Simple_repeat 5 40 0 1 1523 639 196 0 21 chr1 123062443 123062597 -74132835 + polypurine Low_complexity Low_complexity 1 150 0 1 1523 1326 73 0 0 chr1 123062597 123062776 -74132656 + (GAA)n Simple_repeat Simple_repeat 1 179 0 1 1523 199 151 0 36 chr1 123062776 123062800 -74132632 + polypurine Low_complexity Low_complexity 32 54 0 1 1523 345 271 63 21 chr1 123063680 123063823 -74131609 - RMER15 LTR ERVL -87 488 340 1 1523 879 305 62 0 chr1 123064321 123064577 -74130855 + B4A SINE B4 1 272 -20 1 1523 348 24 0 0 chr1 123064581 123064622 -74130810 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1523 503 382 5 14 chr1 123066670 123066880 -74128552 + B4 SINE B4 23 230 -62 1 1523 412 305 69 6 chr1 123067361 123067536 -74127896 - RMER15 LTR ERVL -16 559 374 1 1523 600 40 0 0 chr1 123068345 123068420 -74127012 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1523 403 308 212 17 chr1 123068441 123068672 -74126760 - B4A SINE B4 -16 276 1 1 1523 770 205 173 39 chr1 123068672 123068869 -74126563 - B4 SINE B4 -61 231 7 1 1523 527 291 53 27 chr1 123069360 123069520 -74125912 + B3A SINE B2 3 166 -32 1 1523 504 0 0 0 chr1 123069520 123069576 -74125856 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1523 527 291 53 27 chr1 123069576 123069602 -74125830 + B3A SINE B2 167 194 -4 1 1523 399 309 16 8 chr1 123069708 123069835 -74125597 + B4 SINE B4 2 129 -163 1 1523 1345 198 96 59 chr1 123069841 123070195 -74125237 - ORR1C1 LTR MaLR -11 367 1 1 1523 879 270 62 8 chr1 123070213 123070456 -74124976 - B4 SINE B4 -1 291 36 1 1523 1003 202 201 3 chr1 123070726 123071014 -74124418 + MTE2b LTR MaLR 1 345 -34 1 1523 868 265 109 45 chr1 123071102 123071521 -74123911 - RMER15 LTR ERVL -4 571 38 1 1523 519 312 52 16 chr1 123071894 123072086 -74123346 - RMER30 DNA MER1_type -2 200 2 1 1523 21 36 0 0 chr1 123072272 123072300 -74123132 + AT_rich Low_complexity Low_complexity 1 28 0 1 1523 477 263 102 99 chr1 123072341 123072624 -74122808 - B4 SINE B4 -4 288 5 1 1523 241 118 19 19 chr1 123072759 123072811 -74122621 + GA-rich Low_complexity Low_complexity 3 54 0 1 1523 306 0 0 0 chr1 123072819 123072853 -74122579 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1523 432 0 0 0 chr1 123072853 123072900 -74122532 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1523 766 143 6 44 chr1 123072999 123073182 -74122250 + CT-rich Low_complexity Low_complexity 5 180 0 1 1523 21 0 0 0 chr1 123075015 123075036 -74120396 + AT_rich Low_complexity Low_complexity 1 21 0 1 1523 531 0 0 0 chr1 123075104 123075163 -74120269 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 1 1523 36 0 0 0 chr1 123076245 123076281 -74119151 + AT_rich Low_complexity Low_complexity 1 36 0 1 1524 338 117 0 62 chr1 123077732 123077796 -74117636 + B1F SINE Alu 90 149 0 1 1524 385 236 250 0 chr1 123077914 123078058 -74117374 + ID_B1 SINE B4 7 186 -38 1 1524 224 213 75 62 chr1 123078057 123078137 -74117295 + B1_Mur1 SINE Alu 59 139 -10 1 1524 242 247 25 49 chr1 123078069 123078150 -74117282 + ID_B1 SINE B4 146 224 0 1 1524 189 0 0 0 chr1 123078473 123078494 -74116938 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1524 413 309 76 81 chr1 123079016 123079277 -74116155 + B4A SINE B4 2 276 -16 1 1524 203 189 0 0 chr1 123079310 123079347 -74116085 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 1 1524 414 0 0 0 chr1 123079401 123079447 -74115985 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1524 574 278 22 8 chr1 123079790 123079924 -74115508 - RSINE1 SINE B4 -19 146 11 1 1524 527 293 93 104 chr1 123080128 123080406 -74115026 + B4A SINE B4 2 276 -16 1 1524 189 74 0 0 chr1 123080412 123080439 -74114993 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1524 315 317 35 47 chr1 123080963 123081135 -74114297 + B4A SINE B4 3 172 -120 1 1524 387 0 0 0 chr1 123081150 123081193 -74114239 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1524 485 325 5 98 chr1 123081612 123081827 -74113605 + B4 SINE B4 6 200 -92 1 1524 374 245 77 30 chr1 123081849 123082073 -74113359 - RLTR21 LTR ERVK -321 1251 1123 1 1524 1537 251 38 32 chr1 123082087 123082586 -74112846 + RMER5 LTR ERV1 33 534 0 1 1524 187 151 0 70 chr1 123082586 123082643 -74112789 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 1524 1254 87 63 11 chr1 123083154 123083329 -74112103 + B2_Mm2 SINE B2 1 184 -11 1 1524 360 59 0 19 chr1 123083358 123083410 -74112022 + B2_Mm2 SINE B2 47 97 -98 1 1524 276 30 0 0 chr1 123083438 123083471 -74111961 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1524 236 196 0 0 chr1 123083605 123083651 -74111781 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 1 1524 746 94 0 8 chr1 123083671 123083789 -74111643 + (TAGA)n Simple_repeat Simple_repeat 3 119 0 1 1524 266 323 0 0 chr1 123083802 123083864 -74111568 + ID4_ SINE ID 16 77 -6 1 1524 1696 274 85 12 chr1 123084007 123084653 -74110779 - L1MD1 LINE L1 -246 6387 5695 1 1524 450 0 0 0 chr1 123084657 123084707 -74110725 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1524 1032 272 102 116 chr1 123084807 123085255 -74110177 - L1MD1 LINE L1 -1477 5060 4585 1 1524 284 0 28 0 chr1 123085255 123085291 -74110141 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2 1524 1032 272 102 116 chr1 123085291 123085564 -74109868 - L1MD1 LINE L1 -1953 4584 4320 1 1524 964 194 70 0 chr1 123085564 123085765 -74109667 + B3 SINE B2 2 216 0 2 1524 1032 272 102 116 chr1 123085765 123085879 -74109553 - L1MD1 LINE L1 -2218 4319 4236 1 1524 489 259 70 0 chr1 123085909 123086067 -74109365 - L1MD1 LINE L1 -3297 3240 3072 1 1524 4085 211 75 14 chr1 123086070 123086821 -74108611 + Lx6 LINE L1 5603 6394 -1066 2 1524 369 0 0 0 chr1 123086821 123086862 -74108570 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1524 4085 211 75 14 chr1 123086862 123087034 -74108398 + Lx6 LINE L1 6395 6581 -879 2 1524 829 249 50 5 chr1 123087037 123087259 -74108173 + Lx6 LINE L1 7074 7305 -155 2 1524 542 229 97 25 chr1 123087274 123087511 -74107921 - L1MD1 LINE L1 -3454 3083 2830 1 1524 632 194 93 43 chr1 123087562 123087724 -74107708 - B3 SINE B2 -44 172 3 2 1524 261 0 0 0 chr1 123087797 123087826 -74107606 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2 1524 469 241 27 0 chr1 123087829 123087941 -74107491 - ID_B1 SINE B4 -16 208 94 2 1524 359 274 54 18 chr1 123087996 123088163 -74107269 - L1MD1 LINE L1 -3797 2740 2568 1 1524 409 204 14 21 chr1 123088371 123088511 -74106921 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 1524 270 81 0 0 chr1 123088559 123088596 -74106836 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1524 594 320 43 81 chr1 123088658 123089112 -74106320 - L1MD1 LINE L1 -4667 1966 1527 1 1524 520 312 25 31 chr1 123089112 123089274 -74106158 - RSINE1 SINE B4 -2 163 3 2 1524 594 320 43 81 chr1 123089274 123089676 -74105756 - L1MD1 LINE L1 -5107 1526 1142 1 1524 1174 254 72 17 chr1 123089682 123090030 -74105402 - MTEa LTR MaLR -7 372 6 2 1524 1155 81 0 7 chr1 123090073 123090222 -74105210 + B1_Mus1 SINE Alu 1 148 0 2 1524 254 139 0 0 chr1 123090224 123090286 -74105146 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1524 929 128 13 0 chr1 123090286 123090442 -74104990 + (GGAA)n Simple_repeat Simple_repeat 4 161 0 2 1524 312 281 143 73 chr1 123090673 123090863 -74104569 - L1MD1 LINE L1 -6086 547 333 1 1524 844 271 29 114 chr1 123090863 123091275 -74104157 + MTE2a LTR MaLR 1 377 -2 2 1524 312 281 143 73 chr1 123091275 123091357 -74104075 - L1MD1 LINE L1 -6301 332 256 1 1524 398 288 135 49 chr1 123091533 123091778 -74103654 + RMER15 LTR ERVL 310 575 0 2 1524 752 266 14 86 chr1 123091828 123091868 -74103564 + B3 SINE B2 1 35 -181 2 1524 207 0 0 0 chr1 123091868 123091891 -74103541 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1524 4093 52 6 0 chr1 123091893 123092391 -74103041 - L1_Mus1 LINE L1 -3 6564 6064 2 1524 752 266 14 86 chr1 123092391 123092557 -74102875 + B3 SINE B2 36 195 -21 2 1524 237 83 0 0 chr1 123092557 123092593 -74102839 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1524 911 226 109 82 chr1 123092639 123093006 -74102426 - MTE2a LTR MaLR -2 377 1 2 1524 270 273 122 50 chr1 123093034 123093215 -74102217 - L1MD1 LINE L1 -6420 213 20 1 1524 261 57 0 0 chr1 123093505 123093540 -74101892 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1524 355 262 31 99 chr1 123093635 123093796 -74101636 - B4A SINE B4 -118 174 25 2 1524 229 140 35 0 chr1 123094378 123094435 -74100997 + GA-rich Low_complexity Low_complexity 4 62 0 2 1524 1630 134 140 0 chr1 123094567 123094874 -74100558 - Lx9 LINE L1 -2 7642 7293 2 1524 577 206 15 15 chr1 123094855 123094988 -74100444 + Lx9 LINE L1 7054 7186 -458 2 1524 492 262 118 62 chr1 123095024 123095219 -74100213 - MTE2a LTR MaLR 0 379 174 2 1524 1201 35 29 6 chr1 123095298 123095473 -74099959 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 2 1524 730 136 15 0 chr1 123095676 123095808 -74099624 + CT-rich Low_complexity Low_complexity 2 135 0 2 1524 657 329 24 10 chr1 123095815 123096024 -74099408 - ID_B1 SINE B4 -3 221 10 2 1524 677 246 21 48 chr1 123096749 123096937 -74098495 - B3A SINE B2 -2 196 14 2 1524 1119 256 29 21 chr1 123097096 123097375 -74098057 + B4A SINE B4 12 292 0 2 1524 646 270 125 28 chr1 123097769 123098017 -74097415 + Lx8 LINE L1 6895 7166 -307 2 1524 282 278 164 93 chr1 123098036 123098262 -74097170 + Lx8 LINE L1 7215 7456 -17 2 1524 277 237 0 0 chr1 123098239 123098315 -74097117 + L1MA5 LINE L1 6221 6296 -4 2 1524 3323 213 98 25 chr1 123098348 123099172 -74096260 - Lx7 LINE L1 -906 6790 5907 2 1524 5903 56 1 19 chr1 123099175 123100226 -74095206 + L1Md_A LINE L1 1 752 -5972 2 1524 39465 6 2 1 chr1 123100215 123106415 -74089017 + L1Md_A LINE L1 1 5586 -297 2 1524 9181 4 0 0 chr1 123106415 123107442 -74087990 + L1Md_A LINE L1 5587 6582 0 2 1524 252 0 0 0 chr1 123107611 123107639 -74087793 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1524 706 169 7 51 chr1 123107639 123107776 -74087656 - Lx7 LINE L1 -1781 5915 5785 2 1524 279 264 42 0 chr1 123107811 123107883 -74087549 + MLT1D LTR MaLR 353 427 -78 2 1524 302 225 0 12 chr1 123107896 123107977 -74087455 + CT-rich Low_complexity Low_complexity 14 93 0 2 1524 252 59 0 0 chr1 123108084 123108118 -74087314 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1524 293 316 68 0 chr1 123108944 123109121 -74086311 + MER112 DNA MER1_type 8 196 -65 2 1524 231 188 0 0 chr1 123109121 123109169 -74086263 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1524 209 159 100 27 chr1 123109169 123109279 -74086153 + (TATATG)n Simple_repeat Simple_repeat 6 123 0 2 1524 1247 239 38 19 chr1 123109321 123109636 -74085796 + MTEa LTR MaLR 59 379 0 2 1524 4557 47 1 0 chr1 123109781 123110424 -74085008 - L1Md_F3 LINE L1 -616 5968 5325 2 1524 4751 57 15 0 chr1 123110424 123111016 -74084416 + L1Md_F3 LINE L1 5982 6582 -2 2 1524 248 222 0 53 chr1 123112692 123112749 -74082683 + polypyrimidine Low_complexity Low_complexity 5 58 0 2 1524 563 0 15 0 chr1 123112884 123112951 -74082481 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1524 492 122 0 0 chr1 123112951 123113032 -74082400 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1524 255 226 0 0 chr1 123113102 123113155 -74082277 - B4A SINE B4 -239 53 1 2 1524 197 328 0 0 chr1 123113164 123113225 -74082207 - MER5A DNA MER1_type -122 67 7 2 1524 609 291 93 13 chr1 123113431 123113657 -74081775 - Tigger7 DNA MER2_type -5 2486 2243 2 1524 405 353 42 28 chr1 123113723 123114009 -74081423 - B4A SINE B4 0 292 3 2 1524 328 229 18 0 chr1 123114957 123115066 -74080366 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 2 1524 907 255 10 5 chr1 123115641 123115846 -74079586 - B4 SINE B4 -6 286 81 2 1524 609 299 72 39 chr1 123115865 123116171 -74079261 - Lx8 LINE L1 -1 7472 7157 2 1524 233 196 39 0 chr1 123116218 123116269 -74079163 - Lx8 LINE L1 -273 7200 7148 2 1524 910 204 89 5 chr1 123116269 123116473 -74078959 + RMER19C LTR ERVK 407 669 -68 2 1524 445 204 1 1 chr1 123116506 123116612 -74078820 + MTEa LTR MaLR 264 369 -10 2 1524 694 247 236 18 chr1 123116896 123117226 -74078206 - MTD LTR MaLR -17 402 1 2 1524 222 340 19 10 chr1 123117236 123117340 -74078092 - MIRb SINE MIR -35 233 129 2 1524 788 269 31 44 chr1 123117340 123117566 -74077866 + B4 SINE B4 1 223 -69 2 1524 32 0 0 0 chr1 123117607 123117639 -74077793 + AT_rich Low_complexity Low_complexity 1 32 0 2 1524 624 218 171 13 chr1 123118322 123118550 -74076882 - B4 SINE B4 -27 265 2 2 1524 350 253 46 33 chr1 123119107 123119258 -74076174 + GA-rich Low_complexity Low_complexity 3 155 0 2 1524 1169 55 0 7 chr1 123120256 123120394 -74075038 + B1_Mm SINE Alu 1 137 -10 2 1524 186 43 0 0 chr1 123120394 123120417 -74075015 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1524 1256 233 94 32 chr1 123121389 123121761 -74073671 - MTD LTR MaLR -7 412 18 2 1524 405 0 0 0 chr1 123121818 123121863 -74073569 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1524 1070 79 0 0 chr1 123121863 123122002 -74073430 - B1_Mus1 SINE Alu -9 139 1 2 1524 243 305 135 18 chr1 123122032 123122202 -74073230 - MIR SINE MIR -65 197 8 2 1524 300 140 0 0 chr1 123122380 123122430 -74073002 - HAL1-3A_ME LINE L1 -840 2018 1969 2 1524 206 211 0 0 chr1 123122439 123122477 -74072955 + GA-rich Low_complexity Low_complexity 3 40 0 2 1524 1069 287 4 8 chr1 123122483 123122750 -74072682 - B4A SINE B4 -25 267 2 2 1524 540 68 0 0 chr1 123124522 123124595 -74070837 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1524 932 214 126 35 chr1 123124620 123124801 -74070631 - B4 SINE B4 -5 287 90 2 1524 365 0 22 0 chr1 123124801 123124846 -74070586 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2 1524 932 214 126 35 chr1 123124846 123124925 -74070507 - B4 SINE B4 -203 89 3 2 1524 200 337 47 0 chr1 123125143 123125229 -74070203 - MIRb SINE MIR -87 181 92 2 1524 274 246 0 0 chr1 123125457 123125526 -74069906 - Lx7 LINE L1 -19 7677 7609 2 1524 824 315 69 22 chr1 123125542 123125905 -74069527 + Lx8 LINE L1 6931 7310 -163 2 1524 22 35 0 0 chr1 123126192 123126221 -74069211 + AT_rich Low_complexity Low_complexity 1 29 0 2 1524 595 292 110 43 chr1 123126332 123126586 -74068846 + B4 SINE B4 2 272 -20 2 1524 254 263 0 0 chr1 123126613 123126670 -74068762 + (CATA)n Simple_repeat Simple_repeat 1 57 0 2 1524 369 0 0 0 chr1 123126771 123126812 -74068620 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1524 912 293 12 20 chr1 123126818 123127072 -74068360 - B4A SINE B4 -16 276 25 2 1524 238 309 92 21 chr1 123128392 123128534 -74066898 + RMER15 LTR ERVL 353 504 -71 2 1524 515 285 10 70 chr1 123129195 123129395 -74066037 + B3A SINE B2 1 188 -10 2 1524 1000 248 83 24 chr1 123130300 123130800 -74064632 + Lx8 LINE L1 6888 7471 -2 2 1524 535 314 115 11 chr1 123131254 123131515 -74063917 - B4 SINE B4 0 292 5 2 1524 684 187 8 0 chr1 123131561 123131695 -74063737 - URR1B DNA MER1_type -5 220 86 2 1524 472 304 58 69 chr1 123132069 123132345 -74063087 + B4 SINE B4 10 282 -10 2 1524 594 0 0 0 chr1 123132426 123132492 -74062940 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 2 1524 852 85 0 0 chr1 123132492 123132609 -74062823 + (TC)n Simple_repeat Simple_repeat 2 119 0 2 1524 609 308 44 0 chr1 123132609 123132791 -74062641 - ID_B1 SINE B4 -9 215 26 2 1524 422 359 0 0 chr1 123133153 123133281 -74062151 + RSINE1 SINE B4 27 154 -11 2 1524 558 389 5 28 chr1 123133317 123133531 -74061901 + B4 SINE B4 84 292 0 2 1524 457 271 124 15 chr1 123133561 123133763 -74061669 + B4A SINE B4 1 224 -68 2 1524 261 0 0 0 chr1 123133763 123133792 -74061640 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1524 366 123 0 0 chr1 123134973 123135030 -74060402 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1524 736 272 138 23 chr1 123135031 123135111 -74060321 - B4A SINE B4 0 292 217 2 1524 414 57 0 0 chr1 123135111 123135164 -74060268 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 1524 736 272 138 23 chr1 123135164 123135343 -74060089 - B4A SINE B4 -76 216 3 2 1524 1201 197 144 44 chr1 123135411 123135708 -74059724 + ORR1D1 LTR MaLR 1 332 -42 3 1524 1797 177 88 3 chr1 123135708 123136060 -74059372 + ORR1C2 LTR MaLR 3 384 0 3 1524 1201 197 144 44 chr1 123136060 123136102 -74059330 + ORR1D1 LTR MaLR 333 374 0 3 1524 1643 184 3 3 chr1 123136102 123136377 -74059055 + ORR1D1-int LTR MaLR 1 276 -1094 3 1524 243 0 0 0 chr1 123136377 123136404 -74059028 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1524 1643 184 3 3 chr1 123136404 123136439 -74058993 + ORR1D1-int LTR MaLR 277 311 -1059 3 1524 392 253 20 50 chr1 123136454 123136554 -74058878 - B4A SINE B4 -195 97 1 3 1524 1141 129 160 11 chr1 123136560 123136654 -74058778 - Lx9 LINE L1 -44 7429 7353 3 1524 561 99 0 0 chr1 123136654 123136735 -74058697 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1524 2488 246 31 22 chr1 123136735 123137351 -74058081 - Lx9 LINE L1 -171 7473 6716 3 1524 555 250 83 26 chr1 123138100 123138117 -74057315 - RSINE1 SINE B4 0 165 149 3 1524 468 0 0 0 chr1 123138117 123138169 -74057263 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1524 555 250 83 26 chr1 123138169 123138307 -74057125 - RSINE1 SINE B4 -17 148 2 3 1524 323 331 71 0 chr1 123138499 123138626 -74056806 + ID_B1 SINE B4 80 215 -9 3 1524 639 303 47 14 chr1 123138695 123138906 -74056526 + B4A SINE B4 2 219 -73 3 1524 349 305 0 0 chr1 123138919 123139014 -74056418 + RSINE1 SINE B4 9 103 -62 3 1524 233 241 19 0 chr1 123139044 123139098 -74056334 + B4 SINE B4 221 275 -17 3 1524 418 293 43 8 chr1 123139082 123139199 -74056233 - ID_B1 SINE B4 -92 132 12 3 1524 406 303 110 0 chr1 123139229 123139384 -74056048 - MER20 DNA MER1_type -44 175 4 3 1524 270 0 0 0 chr1 123139408 123139438 -74055994 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1524 300 214 110 20 chr1 123139464 123139564 -74055868 - PB1D9 SINE Alu -7 113 5 3 1524 744 228 6 6 chr1 123139488 123139647 -74055785 - ID_B1 SINE B4 -64 160 2 3 1524 263 253 63 0 chr1 123140550 123140629 -74054803 - L1M4c LINE L1 -1139 5243 5160 3 1524 357 278 30 20 chr1 123140695 123140794 -74054638 + RSINE1 SINE B4 4 103 -62 3 1524 225 0 0 0 chr1 123141100 123141125 -74054307 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1524 198 0 0 0 chr1 123141125 123141146 -74054286 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1524 417 20 0 0 chr1 123141146 123141195 -74054237 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1524 4378 2 0 0 chr1 123141229 123141703 -74053729 + L1Md_A LINE L1 6109 6582 0 3 1524 486 210 38 92 chr1 123141788 123141972 -74053460 + L1M3 LINE L1 2681 2854 -3286 3 1524 240 236 0 0 chr1 123142577 123142632 -74052800 - L1M4c LINE L1 -3962 2422 2368 3 1524 321 361 15 0 chr1 123142922 123143052 -74052380 - ID_B1 SINE B4 0 224 93 3 1524 416 206 29 0 chr1 123143248 123143384 -74052048 + CT-rich Low_complexity Low_complexity 2 141 0 3 1524 678 298 10 50 chr1 123143926 123144124 -74051308 + B4A SINE B4 85 274 -18 3 1524 244 302 40 0 chr1 123144573 123144699 -74050733 + (TG)n Simple_repeat Simple_repeat 1 131 0 3 1524 219 146 0 0 chr1 123144703 123144744 -74050688 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1524 316 340 0 12 chr1 123144745 123144909 -74050523 + (TG)n Simple_repeat Simple_repeat 1 162 0 3 1524 310 318 73 69 chr1 123145144 123145418 -74050014 - B4 SINE B4 -17 275 1 3 1524 215 147 88 0 chr1 123145459 123145549 -74049883 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1524 340 311 78 12 chr1 123145590 123145756 -74049676 + L1ME3A LINE L1 5959 6135 -38 3 1524 868 255 15 5 chr1 123145776 123145981 -74049451 - B3 SINE B2 0 216 10 3 1524 2224 168 22 5 chr1 123146054 123146461 -74048971 - MTC LTR MaLR -7 414 1 3 1524 1014 261 50 11 chr1 123146741 123147020 -74048412 + B4 SINE B4 1 290 -2 3 1524 798 272 68 0 chr1 123147528 123147719 -74047713 + B4A SINE B4 7 210 -82 3 1524 847 274 55 74 chr1 123147796 123148204 -74047228 - MTE2a LTR MaLR -28 391 1 3 1524 351 0 0 0 chr1 123148210 123148249 -74047183 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1524 558 137 0 0 chr1 123148321 123148416 -74047016 + (CATA)n Simple_repeat Simple_repeat 4 98 0 3 1524 721 295 18 9 chr1 123149125 123149350 -74046082 + B4A SINE B4 1 227 -65 3 1524 315 230 0 84 chr1 123149350 123149445 -74045987 + RSINE1 SINE B4 2 88 -77 3 1524 558 0 0 0 chr1 123149456 123149518 -74045914 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1524 1126 253 39 7 chr1 123149806 123150089 -74045343 + B4 SINE B4 1 292 0 3 1524 299 266 20 69 chr1 123150152 123150253 -74045179 + PB1D9 SINE Alu 3 98 -22 3 1524 761 249 186 12 chr1 123150263 123150511 -74044921 + B4A SINE B4 2 292 0 3 1524 297 0 0 0 chr1 123151498 123151531 -74043901 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1524 351 0 0 0 chr1 123151707 123151746 -74043686 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1524 2930 199 57 3 chr1 123151777 123152376 -74043056 + L1_Mur3 LINE L1 21 651 -7077 3 1524 243 283 91 51 chr1 123152376 123152629 -74042803 + RLTR15 LTR ERVK 87 349 -10 3 1524 9593 160 34 33 chr1 123152636 123154762 -74040670 + L1_Mur3 LINE L1 1352 4744 -1136 3 1524 3328 38 2 8 chr1 123154762 123155160 -74040272 - MTA_Mm LTR MaLR 0 396 1 3 1524 9593 153 35 25 chr1 123155160 123155476 -74039956 + L1_Mur3 LINE L1 4745 5039 -841 3 1524 330 284 70 61 chr1 123155737 123155958 -74039474 - RMER20B LTR ERVK -208 419 168 3 1524 2634 178 4 4 chr1 123156100 123156580 -74038852 + L1_Mur3 LINE L1 5033 5512 -368 3 1524 740 243 29 6 chr1 123156637 123156811 -74038621 + MTE2a LTR MaLR 202 379 0 3 1524 320 344 102 80 chr1 123157445 123157720 -74037712 + B4 SINE B4 2 282 -10 3 1524 213 39 0 0 chr1 123157768 123157794 -74037638 + (CATA)n Simple_repeat Simple_repeat 2 27 0 3 1524 487 293 16 0 chr1 123158182 123158305 -74037127 - B3A SINE B2 -73 125 1 3 1524 844 234 33 5 chr1 123158343 123158553 -74036879 + B3 SINE B2 1 216 0 3 1524 29 47 0 0 chr1 123158592 123158635 -74036797 + AT_rich Low_complexity Low_complexity 1 43 0 3 1524 465 337 25 25 chr1 123158880 123159081 -74036351 + B4A SINE B4 7 207 -85 3 1524 259 248 32 89 chr1 123159497 123159621 -74035811 - Lx7 LINE L1 -2 7694 7578 3 1524 369 62 0 0 chr1 123159622 123159670 -74035762 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 3 1524 496 300 62 34 chr1 123159670 123159846 -74035586 - MTE2b LTR MaLR -196 183 3 3 1524 707 227 21 0 chr1 123159949 123160090 -74035342 - B1_Mus2 SINE Alu -1 146 3 3 1524 341 253 0 65 chr1 123160295 123160388 -74035044 - B1F2 SINE Alu -58 91 5 3 1524 596 291 129 36 chr1 123160434 123160790 -74034642 + MER113 DNA MER1_type 127 515 -6 3 1524 502 250 118 70 chr1 123160932 123161160 -74034272 + B4A SINE B4 15 253 -39 3 1524 837 123 0 0 chr1 123161194 123161332 -74034100 + (CA)n Simple_repeat Simple_repeat 2 139 0 3 1524 733 248 113 36 chr1 123161561 123161708 -74033724 + B4 SINE B4 50 201 -91 3 1524 315 0 0 0 chr1 123161708 123161743 -74033689 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1524 733 248 113 36 chr1 123161743 123161817 -74033615 + B4 SINE B4 202 287 -5 3 1524 662 97 19 0 chr1 123161927 123162030 -74033402 + (GGGA)n Simple_repeat Simple_repeat 3 107 0 3 1524 202 363 40 14 chr1 123162107 123162255 -74033177 - MIRb SINE MIR -30 238 87 3 1524 22003 80 6 14 chr1 123162459 123165701 -74029731 + L1Md_F LINE L1 487 3720 -2163 3 1524 1231 34 0 0 chr1 123165701 123165847 -74029585 + B1_Mm SINE Alu 2 147 0 3 1524 22003 71 1 9 chr1 123165847 123166284 -74029148 + L1Md_F LINE L1 3721 4137 -1746 3 1524 2013 151 0 3 chr1 123166284 123166596 -74028836 - RLTR10E LTR ERVK 0 311 1 3 1524 4321 121 30 1 chr1 123166596 123167270 -74028162 - IAPEY3-int LTR ERVK 0 7680 6965 3 1524 1568 85 112 0 chr1 123167270 123167494 -74027938 - IAP-d-int LTR ERVK -1287 5255 5007 3 1524 359 158 0 0 chr1 123167494 123167551 -74027881 - IAP-d-int LTR ERVK -6039 503 447 3 1524 535 304 43 43 chr1 123167568 123167895 -74027537 - IAPEY3-int LTR ERVK -5479 1063 822 3 1524 3216 43 94 2 chr1 123167986 123168400 -74027032 - RLTR10-int LTR ERVK -995 992 549 3 1524 417 113 45 36 chr1 123168400 123168510 -74026922 + CT-rich Low_complexity Low_complexity 4 114 0 3 1524 426 41 0 0 chr1 123168628 123168677 -74026755 - MMERVK10C-int LTR ERVK -7314 267 219 3 1524 11313 70 1 0 chr1 123168688 123170137 -74025295 + L1Md_F2 LINE L1 4136 5586 -297 3 1524 7635 57 31 3 chr1 123170138 123171106 -74024326 + L1Md_F2 LINE L1 5588 6582 0 3 1524 574 303 5 53 chr1 123171379 123171585 -74023847 + B4 SINE B4 28 223 -69 3 1524 333 0 0 0 chr1 123171729 123171766 -74023666 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1524 610 291 28 33 chr1 123171767 123171980 -74023452 - ID_B1 SINE B4 -11 213 2 3 1524 1427 228 40 32 chr1 123172346 123172717 -74022715 + MTEa LTR MaLR 6 379 0 3 1524 768 275 13 105 chr1 123173975 123174288 -74021144 + B4 SINE B4 7 290 -2 3 1524 2303 116 104 3 chr1 123174725 123175080 -74020352 + ORR1B1 LTR MaLR 3 393 -1 3 1524 1080 250 10 44 chr1 123175700 123175997 -74019435 + B4A SINE B4 1 287 -5 3 1524 1266 230 13 98 chr1 123176380 123176698 -74018734 + B4A SINE B4 2 292 0 3 1524 250 260 20 0 chr1 123176698 123176798 -74018634 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1524 251 250 33 0 chr1 123176811 123176871 -74018561 + B4A SINE B4 230 291 -1 3 1524 291 273 0 0 chr1 123178319 123178385 -74017047 + B4 SINE B4 8 73 -219 3 1524 230 237 34 0 chr1 123178520 123178579 -74016853 + B4 SINE B4 138 198 -94 3 1524 204 328 0 0 chr1 123178635 123178699 -74016733 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1524 983 130 0 0 chr1 123178843 123178980 -74016452 + B1_Mus1 SINE Alu 2 138 -10 3 1524 585 0 0 0 chr1 123178980 123179045 -74016387 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1524 531 0 0 0 chr1 123179474 123179533 -74015899 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1524 195 42 0 0 chr1 123179533 123179556 -74015876 + (CG)n Simple_repeat Simple_repeat 2 25 0 3 1524 665 294 45 72 chr1 123179577 123179867 -74015565 - B4A SINE B4 -2 290 9 3 1524 1749 165 58 91 chr1 123180191 123180220 -74015212 - ORR1B1 LTR MaLR -13 381 358 3 1524 3302 41 8 2 chr1 123180220 123180614 -74014818 + MTA_Mm LTR MaLR 1 396 0 3 1524 1749 165 58 91 chr1 123180614 123180978 -74014454 - ORR1B1 LTR MaLR -37 357 1 3 1524 917 210 31 5 chr1 123181612 123181808 -74013624 + B4A SINE B4 86 286 -6 3 1524 207 114 0 0 chr1 123181816 123181851 -74013581 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1524 805 220 94 123 chr1 123182005 123182388 -74013044 + MTE2a LTR MaLR 6 377 -2 3 1524 678 273 95 42 chr1 123182965 123183206 -74012226 + B4 SINE B4 3 256 -36 4 1524 243 0 0 0 chr1 123183221 123183248 -74012184 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1524 360 0 0 0 chr1 123183248 123183287 -74012145 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1524 897 28 0 0 chr1 123183444 123183552 -74011880 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 1524 1027 226 76 86 chr1 123183911 123184201 -74011231 - B4 SINE B4 -4 288 2 4 1524 469 304 48 7 chr1 123184237 123184383 -74011049 + RSINE1 SINE B4 12 163 -2 4 1524 436 256 24 16 chr1 123185102 123185225 -74010207 - RSINE1 SINE B4 -1 164 41 4 1524 600 238 89 11 chr1 123185228 123185419 -74010013 - ID_B1 SINE B4 -15 209 4 4 1524 630 289 114 45 chr1 123185701 123185947 -74009485 + B4A SINE B4 29 291 -1 4 1524 211 202 25 0 chr1 123185949 123186028 -74009404 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1524 431 35 18 0 chr1 123186029 123186086 -74009346 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 1524 513 141 0 0 chr1 123186225 123186310 -74009122 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 1524 324 0 0 0 chr1 123186378 123186414 -74009018 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1524 625 248 13 26 chr1 123186438 123186591 -74008841 - B4 SINE B4 -141 151 1 4 1524 311 264 231 0 chr1 123188288 123188379 -74007053 + RSINE1 SINE B4 32 143 -22 4 1524 306 0 0 0 chr1 123188382 123188416 -74007016 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1524 926 256 23 0 chr1 123188550 123188765 -74006667 + ID_B1 SINE B4 3 222 -2 4 1524 695 277 48 34 chr1 123188844 123189113 -74006319 + B4A SINE B4 2 274 -18 4 1524 213 65 0 0 chr1 123189168 123189199 -74006233 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1524 675 237 28 17 chr1 123189508 123189684 -74005748 - B3A SINE B2 -6 192 15 4 1524 800 278 103 19 chr1 123190378 123190649 -74004783 - ORR1E LTR MaLR -55 304 11 4 1524 678 227 0 0 chr1 123190692 123190855 -74004577 + (TATATG)n Simple_repeat Simple_repeat 2 164 0 4 1524 526 214 113 40 chr1 123190863 123191014 -74004418 - RSINE1 SINE B4 -1 164 3 4 1524 433 335 239 0 chr1 123191260 123191478 -74003954 + B4A SINE B4 1 270 -22 4 1524 285 29 0 0 chr1 123191525 123191559 -74003873 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1524 792 316 14 0 chr1 123192067 123192282 -74003150 - B4 SINE B4 -74 218 1 4 1524 744 151 0 0 chr1 123192575 123192754 -74002678 + CT-rich Low_complexity Low_complexity 1 179 0 4 1524 307 276 0 30 chr1 123192774 123192875 -74002557 - B4 SINE B4 -2 290 193 4 1524 706 282 15 35 chr1 123192973 123193034 -74002398 - B3A SINE B2 0 198 145 4 1524 714 105 0 0 chr1 123193034 123193139 -74002293 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 1524 706 282 15 35 chr1 123193139 123193279 -74002153 - B3A SINE B2 -54 144 2 4 1524 242 278 110 11 chr1 123193285 123193376 -74002056 - B4 SINE B4 -192 100 1 4 1524 200 94 0 30 chr1 123194012 123194045 -74001387 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 4 1524 340 316 25 41 chr1 123194961 123195083 -74000349 + RSINE1 SINE B4 46 165 0 4 1524 238 342 0 14 chr1 123195180 123195254 -74000178 + ID4 SINE ID 8 80 -3 4 1524 240 297 9 90 chr1 123195789 123195802 -73999630 + MT2B2 LTR ERVL 156 159 -425 4 1524 596 241 28 7 chr1 123195802 123195944 -73999488 + B1F SINE Alu 4 148 -1 4 1524 2771 203 50 67 chr1 123196038 123196868 -73998564 + RMER1B Other Other 52 1065 -1 4 1524 400 200 25 12 chr1 123196894 123196975 -73998457 + B1_Mur4 SINE Alu 12 93 -57 4 1524 561 42 0 0 chr1 123197007 123197079 -73998353 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1524 663 244 134 5 chr1 123197198 123197392 -73998040 - ID_B1 SINE B4 -4 220 2 4 1524 792 250 174 17 chr1 123197548 123197898 -73997534 + MTD LTR MaLR 1 405 -14 4 1524 948 242 108 86 chr1 123198226 123198597 -73996835 - MTEa LTR MaLR 0 379 1 4 1524 338 291 0 0 chr1 123199074 123199160 -73996272 - PB1D10 SINE Alu 0 117 32 4 1524 224 304 133 9 chr1 123199182 123199295 -73996137 + B4 SINE B4 8 134 -158 4 1524 1097 59 0 0 chr1 123199550 123199686 -73995746 + B1_Mm SINE Alu 2 137 -10 4 1524 559 237 65 19 chr1 123199724 123199879 -73995553 + RSINE1 SINE B4 2 163 -2 4 1524 22 0 0 0 chr1 123200445 123200467 -73994965 + AT_rich Low_complexity Low_complexity 1 22 0 4 1524 2146 119 25 0 chr1 123200566 123200884 -73994548 + ORR1A3 LTR MaLR 1 326 0 4 1524 218 32 32 0 chr1 123202358 123202389 -73993043 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1524 723 222 29 6 chr1 123202986 123203158 -73992274 + ID_B1 SINE B4 49 224 0 4 1524 1140 124 0 0 chr1 123204201 123204379 -73991053 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1524 251 171 29 0 chr1 123204379 123204449 -73990983 + GA-rich Low_complexity Low_complexity 1 72 0 4 1524 1455 75 0 11 chr1 123205138 123205328 -73990104 - B2_Mm2 SINE B2 -7 188 1 4 1524 780 206 7 0 chr1 123205361 123205502 -73989930 + B1_Mur3 SINE Alu 1 142 -7 4 1524 849 103 87 14 chr1 123205824 123205837 -73989595 - B1_Mus1 SINE Alu 0 148 137 4 1524 301 22 21 21 chr1 123205837 123205884 -73989548 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1524 849 103 87 14 chr1 123205884 123206008 -73989424 - B1_Mus1 SINE Alu -12 136 1 4 1524 3304 89 0 31 chr1 123206034 123206521 -73988911 - L1_Mus3 LINE L1 -5 6633 6162 4 190 2451 285 62 46 chr1 123206876 123207789 -73987643 + Lx8 LINE L1 6189 7116 -357 4 1525 279 0 0 0 chr1 123207975 123208006 -73987426 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 4 1525 325 252 33 83 chr1 123209496 123209617 -73985815 + PB1D10 SINE Alu 2 116 -1 4 1525 840 242 25 165 chr1 123209832 123210148 -73985284 - B4 SINE B4 -18 274 3 4 1525 459 282 76 43 chr1 123210176 123210371 -73985061 - B3A SINE B2 -12 204 6 4 1525 28 0 0 0 chr1 123210386 123210414 -73985018 + AT_rich Low_complexity Low_complexity 1 28 0 4 1525 268 242 0 15 chr1 123210652 123210719 -73984713 + B4 SINE B4 2 67 -225 4 1525 284 202 64 0 chr1 123211041 123211135 -73984297 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 4 1525 984 259 30 50 chr1 123212004 123212083 -73983349 + B4 SINE B4 2 80 -212 4 1525 717 88 0 0 chr1 123212083 123212185 -73983247 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 1525 984 259 30 50 chr1 123212185 123212325 -73983107 + B4 SINE B4 81 222 -70 4 1525 387 0 0 0 chr1 123212325 123212368 -73983064 + (CCA)n Simple_repeat Simple_repeat 1 43 0 4 1525 984 259 30 50 chr1 123212368 123212444 -73982988 + B4 SINE B4 223 291 -1 4 1525 402 263 0 10 chr1 123213165 123213261 -73982171 + ID_B1 SINE B4 91 185 -39 4 1525 1844 254 151 14 chr1 123213353 123213987 -73981445 + Lx8 LINE L1 6715 7435 -38 4 1525 561 243 36 15 chr1 123213990 123214131 -73981301 + B1_Mur2 SINE Alu 3 138 -11 4 1525 203 61 30 0 chr1 123214131 123214164 -73981268 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1525 297 0 0 0 chr1 123214282 123214315 -73981117 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1525 920 275 56 0 chr1 123215767 123216018 -73979414 + B4A SINE B4 24 288 -4 4 1525 384 22 0 0 chr1 123216070 123216115 -73979317 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1525 774 226 80 0 chr1 123216781 123216980 -73978452 + B3 SINE B2 2 216 0 4 1525 435 335 18 6 chr1 123217013 123217178 -73978254 + B4A SINE B4 1 167 -125 4 1525 316 253 40 0 chr1 123217489 123217564 -73977868 + ID_B1 SINE B4 139 216 -8 4 1525 195 226 19 0 chr1 123217908 123217961 -73977471 - MIR SINE MIR -47 215 162 4 1525 458 262 19 0 chr1 123217963 123218066 -73977366 + PB1D10 SINE Alu 6 110 -7 4 1525 613 224 67 13 chr1 123218423 123218572 -73976860 - RSINE1 SINE B4 0 165 9 4 1525 530 279 18 47 chr1 123218919 123219088 -73976344 + RSINE1 SINE B4 2 165 0 4 1525 390 236 186 138 chr1 123219206 123219373 -73976059 - ID_B1 SINE B4 0 224 50 4 1525 261 261 126 0 chr1 123219798 123219909 -73975523 - MER20B DNA MER1_type -644 139 15 4 1525 188 261 0 0 chr1 123220196 123220242 -73975190 - MIR3 SINE MIR -11 197 152 4 1525 327 188 98 0 chr1 123220390 123220480 -73974952 + B1F SINE Alu 53 149 0 4 1525 347 182 15 0 chr1 123220482 123220548 -73974884 + GA-rich Low_complexity Low_complexity 3 69 0 4 1525 420 147 0 0 chr1 123220548 123220623 -73974809 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 4 1525 450 258 45 15 chr1 123220725 123220737 -73974695 + B1F1 SINE Alu 12 144 0 4 1525 566 248 0 0 chr1 123220737 123220854 -73974578 + ID_B1 SINE B4 105 221 -3 4 1525 428 269 107 8 chr1 123221015 123221146 -73974286 + RSINE1 SINE B4 3 146 -19 4 1525 31 0 0 0 chr1 123221201 123221232 -73974200 + AT_rich Low_complexity Low_complexity 1 31 0 4 1525 389 244 16 50 chr1 123221552 123221673 -73973759 - PB1D10 SINE Alu 0 117 1 4 1525 225 0 0 0 chr1 123221805 123221830 -73973602 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1525 1114 88 0 0 chr1 123221830 123221977 -73973455 - B1_Mus1 SINE Alu 0 148 2 4 1525 268 333 87 22 chr1 123222397 123222535 -73972897 - B1_Mur3 SINE Alu 0 149 3 4 1525 393 292 0 45 chr1 123222425 123222536 -73972896 - ID_B1 SINE B4 -36 188 83 4 1525 273 29 0 0 chr1 123223371 123223405 -73972027 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1525 618 211 66 29 chr1 123224864 123225001 -73970431 - B1_Mur1 SINE Alu -7 142 1 4 1525 1012 234 70 53 chr1 123225829 123226171 -73969261 + MTEb LTR MaLR 20 367 -12 4 1525 608 236 0 23 chr1 123226924 123227054 -73968378 - B1F2 SINE Alu -9 140 14 4 1525 311 231 49 56 chr1 123227380 123227522 -73967910 + MLT1A1 LTR MaLR 268 408 0 5 1525 767 268 164 19 chr1 123227734 123228046 -73967386 - ORR1E LTR MaLR 0 359 3 5 1525 867 253 99 4 chr1 123228387 123228649 -73966783 - B4A SINE B4 -4 288 2 5 1525 974 277 19 19 chr1 123229544 123229809 -73965623 + B4 SINE B4 11 275 -17 5 1525 423 0 0 0 chr1 123229813 123229860 -73965572 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1525 516 244 8 17 chr1 123230621 123230738 -73964694 - PB1D10 SINE Alu -1 116 1 5 1525 326 241 36 0 chr1 123230896 123230979 -73964453 - ORR1D1 LTR MaLR -2 372 287 5 1525 1613 154 43 94 chr1 123230975 123231348 -73964084 + ORR1B1 LTR MaLR 41 394 0 5 1525 1084 202 58 8 chr1 123231348 123231604 -73963828 - ORR1D1 LTR MaLR -105 269 1 5 1525 584 281 42 0 chr1 123231615 123231782 -73963650 - RMER15 LTR ERVL -33 542 369 5 1525 213 65 0 0 chr1 123232101 123232132 -73963300 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1525 597 247 203 0 chr1 123233063 123233290 -73962142 - B4A SINE B4 -16 276 4 5 1525 197 98 0 24 chr1 123233605 123233647 -73961785 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1525 715 302 100 31 chr1 123233989 123234379 -73961053 - MTD LTR MaLR 0 419 3 5 1525 23 33 0 0 chr1 123234675 123234705 -73960727 + AT_rich Low_complexity Low_complexity 1 30 0 5 1525 244 326 72 53 chr1 123235093 123235300 -73960132 - MTEa LTR MaLR -97 282 72 5 1525 879 189 24 0 chr1 123235137 123235301 -73960131 - MT2A LTR ERVL -295 238 71 5 1525 3607 212 56 95 chr1 123235308 123236328 -73959104 - MERVL_2A-int LTR ERVL -100 5661 4682 5 1525 1888 178 68 3 chr1 123236322 123236661 -73958771 - MERVL_2A-int LTR ERVL -1566 4195 3835 5 1525 230 358 0 24 chr1 123238030 123238113 -73957319 - MLT1G LTR MaLR -502 89 9 5 1525 300 27 0 0 chr1 123238429 123238466 -73956966 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1525 587 302 62 65 chr1 123238543 123238865 -73956567 + RLTR26 LTR ERVK 97 417 -225 5 1525 183 381 31 10 chr1 123239254 123239352 -73956080 + MIR SINE MIR 28 127 -81 5 1525 1150 261 36 0 chr1 123239416 123239692 -73955740 + B4 SINE B4 1 286 -6 5 1525 966 282 146 34 chr1 123239802 123240330 -73955102 - Lx8 LINE L1 0 7473 6887 5 1525 539 256 101 0 chr1 123241480 123241609 -73953823 + B3A SINE B2 7 148 -50 5 1525 540 0 0 0 chr1 123241610 123241670 -73953762 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1525 180 0 0 0 chr1 123241670 123241689 -73953743 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1525 23 33 0 0 chr1 123241703 123241733 -73953699 + AT_rich Low_complexity Low_complexity 1 30 0 5 1525 812 235 83 20 chr1 123241735 123241939 -73953493 + ID_B1 SINE B4 5 221 -3 5 1525 25 51 0 0 chr1 123242490 123242529 -73952903 + AT_rich Low_complexity Low_complexity 1 39 0 5 1525 1865 134 27 78 chr1 123242539 123242912 -73952520 - ORR1B1 LTR MaLR 0 394 41 5 1525 3463 281 92 88 chr1 123242920 123244481 -73950951 - Lx8 LINE L1 -26 7447 5881 5 1525 348 233 33 33 chr1 123244464 123244584 -73950848 - Lx7 LINE L1 -1880 5816 5697 5 1525 651 258 134 5 chr1 123244592 123244779 -73950653 - Lx8 LINE L1 -699 6774 6564 5 1525 1364 281 72 11 chr1 123244771 123245243 -73950189 - L1_Mur3 LINE L1 -194 5686 5186 5 1525 677 114 9 0 chr1 123246019 123246133 -73949299 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 5 1525 827 237 39 112 chr1 123246222 123246507 -73948925 - B4 SINE B4 -8 284 21 5 1525 626 291 11 0 chr1 123246955 123247130 -73948302 - ID_B1 SINE B4 -8 216 40 5 1525 469 270 14 61 chr1 123247594 123247807 -73947625 + L1M2 LINE L1 5153 5355 -788 5 1525 4376 108 140 1 chr1 123247813 123248519 -73946913 + Lx2 LINE L1 5842 6645 -352 5 1525 942 149 6 11 chr1 123248534 123248710 -73946722 + Lx LINE L1 6478 6652 -2 5 1525 971 228 86 15 chr1 123248711 123248978 -73946454 + B4 SINE B4 1 286 -6 5 1525 412 242 70 9 chr1 123249017 123249190 -73946242 + L1_Mur3 LINE L1 5318 5483 -394 5 1525 546 16 0 0 chr1 123249248 123249311 -73946121 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1525 494 254 8 0 chr1 123249337 123249455 -73945977 - RSINE1 SINE B4 -45 120 2 5 1525 406 156 0 86 chr1 123249554 123249659 -73945773 + Lx2 LINE L1 6892 6987 -10 5 1525 442 261 71 13 chr1 123250041 123250061 -73945371 - B4A SINE B4 -48 244 219 5 1525 637 190 0 33 chr1 123250061 123250181 -73945251 - PB1D9 SINE Alu 0 120 5 5 1525 479 291 22 0 chr1 123250181 123250315 -73945117 - B4 SINE B4 -76 216 80 5 1525 26 0 0 0 chr1 123250459 123250485 -73944947 + AT_rich Low_complexity Low_complexity 1 26 0 5 1525 3683 264 50 32 chr1 123250542 123251640 -73943792 - Lx8 LINE L1 -281 7192 6075 5 1525 439 191 0 56 chr1 123252125 123252214 -73943218 - B4A SINE B4 -200 92 9 5 1525 762 264 98 49 chr1 123253040 123253387 -73942045 - MT2A LTR ERVL -5 528 165 5 1525 387 267 53 40 chr1 123253416 123253568 -73941864 - B3 SINE B2 -16 200 47 5 1525 249 348 11 0 chr1 123254507 123254599 -73940833 - B4A SINE B4 -72 220 128 5 1525 198 0 0 0 chr1 123254651 123254673 -73940759 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1525 372 71 0 0 chr1 123254673 123254729 -73940703 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1525 268 289 0 84 chr1 123254746 123254829 -73940603 - B4A SINE B4 -213 79 4 5 1525 517 330 1 5 chr1 123254896 123255581 -73939851 + C-rich Low_complexity Low_complexity 1 682 0 5 1525 471 309 0 0 chr1 123255567 123255793 -73939639 + CT-rich Low_complexity Low_complexity 1 226 0 5 1525 338 324 0 0 chr1 123255792 123255967 -73939465 + (CTG)n Simple_repeat Simple_repeat 1 175 0 5 1525 464 307 0 0 chr1 123255923 123256154 -73939278 + CT-rich Low_complexity Low_complexity 1 231 0 5 1525 334 299 23 8 chr1 123256339 123256467 -73938965 - RSINE1 SINE B4 -33 132 3 5 1525 396 272 135 72 chr1 123256797 123257019 -73938413 - ORR1D2 LTR MaLR -12 362 127 5 1525 645 132 0 0 chr1 123257023 123257144 -73938288 + (CA)n Simple_repeat Simple_repeat 1 121 0 5 1525 3512 189 32 131 chr1 123257888 123258162 -73937270 + Lx7 LINE L1 6818 7028 -668 5 1525 1139 75 7 0 chr1 123258162 123258308 -73937124 + B1_Mus2 SINE Alu 1 147 0 5 1525 864 114 0 0 chr1 123258308 123258439 -73936993 + (GGA)n Simple_repeat Simple_repeat 2 132 0 5 1525 3512 189 32 131 chr1 123258439 123259139 -73936293 + Lx7 LINE L1 7029 7695 -1 5 1525 772 229 16 21 chr1 123259201 123259393 -73936039 - B3A SINE B2 -6 192 2 5 1525 276 100 0 0 chr1 123259468 123259508 -73935924 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1525 653 92 10 0 chr1 123259743 123259841 -73935591 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 5 1525 3599 164 38 33 chr1 123260047 123260126 -73935306 + Lx5 LINE L1 5168 5250 -630 5 1525 1189 66 175 0 chr1 123260126 123260292 -73935140 + B2_Mm2 SINE B2 1 195 0 5 1525 3599 220 40 45 chr1 123260292 123261954 -73933478 + Lx5 LINE L1 5251 7050 0 5 1525 1453 225 22 56 chr1 123261991 123262349 -73933083 - ORR1E LTR MaLR -2 357 12 5 1525 643 289 40 0 chr1 123262636 123262809 -73932623 + B4A SINE B4 4 183 -109 5 1525 1679 228 55 10 chr1 123262834 123263233 -73932199 - MTD LTR MaLR 0 419 3 5 1525 576 273 124 0 chr1 123263285 123263446 -73931986 + B3A SINE B2 3 183 -15 5 1525 1779 80 12 0 chr1 123263541 123263821 -73931611 + ORR1A2 LTR MaLR 1 319 -8 5 1525 204 54 0 98 chr1 123264310 123264351 -73931081 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1525 576 278 7 0 chr1 123264490 123264634 -73930798 - ID_B1 SINE B4 -1 223 79 5 1525 450 0 0 0 chr1 123264689 123264739 -73930693 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1525 245 304 62 23 chr1 123264864 123264992 -73930440 + MER103 DNA DNA 3 135 -31 5 1525 343 293 44 22 chr1 123265122 123265258 -73930174 + B4 SINE B4 14 152 -140 5 1525 600 258 64 1 chr1 123265337 123265526 -73929906 - B3A SINE B2 -6 210 10 5 1525 531 0 0 0 chr1 123265548 123265607 -73929825 + (TGG)n Simple_repeat Simple_repeat 3 61 0 5 1525 539 200 9 9 chr1 123265621 123265732 -73929700 - B1_Mus2 SINE Alu 0 147 37 5 1525 661 255 0 7 chr1 123265782 123265924 -73929508 + B1_Mus1 SINE Alu 3 143 -5 5 1525 313 322 11 0 chr1 123265925 123266012 -73929420 + GA-rich Low_complexity Low_complexity 5 92 0 5 1525 1347 72 0 0 chr1 123266174 123266354 -73929078 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1525 859 250 78 48 chr1 123266401 123266695 -73928737 + MT2A LTR ERVL 35 337 -196 5 1525 278 217 29 0 chr1 123266691 123266760 -73928672 + B4A SINE B4 190 260 -32 5 1525 610 247 79 37 chr1 123266956 123267120 -73928312 + B3 SINE B2 3 173 -43 5 1525 25 31 0 0 chr1 123267151 123267183 -73928249 + AT_rich Low_complexity Low_complexity 1 32 0 5 1525 1544 62 16 0 chr1 123268788 123268980 -73926452 + B2_Mm2 SINE B2 1 195 0 5 1525 333 0 0 0 chr1 123269044 123269081 -73926351 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1525 773 278 21 101 chr1 123269110 123269398 -73926034 - B4 SINE B4 -14 278 14 5 1525 706 262 62 31 chr1 123270551 123270744 -73924688 + ID_B1 SINE B4 22 220 -4 5 1525 660 119 0 0 chr1 123271202 123271311 -73924121 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1525 387 0 0 0 chr1 123271312 123271355 -73924077 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1525 974 301 59 49 chr1 123271585 123272113 -73923319 + MT2A LTR ERVL 1 533 0 5 1525 908 134 6 0 chr1 123272152 123272309 -73923123 + (GAA)n Simple_repeat Simple_repeat 3 160 0 5 1525 403 314 18 54 chr1 123272788 123272956 -73922476 - B4A SINE B4 -130 162 1 5 1525 348 24 0 0 chr1 123273166 123273207 -73922225 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1525 1063 270 0 37 chr1 123273239 123273378 -73922054 - B4 SINE B4 -31 261 126 5 1525 3610 45 0 11 chr1 123273378 123273825 -73921607 - L1Md_F2 LINE L1 0 6582 6141 5 1525 1063 270 0 37 chr1 123273825 123273954 -73921478 - B4 SINE B4 -167 125 3 5 1525 267 264 0 65 chr1 123274240 123274317 -73921115 - MamRep4096 DNA hAT? -38 388 317 5 1525 246 298 71 24 chr1 123274343 123274470 -73920962 - MamRep4096 DNA hAT? -293 133 1 5 1525 680 245 108 39 chr1 123274625 123274829 -73920603 + ID_B1 SINE B4 5 222 -2 6 1525 929 299 21 3 chr1 123274845 123275130 -73920302 + B4A SINE B4 3 292 0 6 1525 1429 186 68 10 chr1 123275399 123275693 -73919739 - ORR1D1 LTR MaLR -63 311 1 6 1525 621 286 24 29 chr1 123275693 123275879 -73919553 - B4A SINE B4 -107 185 1 6 1525 235 273 33 33 chr1 123277259 123277350 -73918082 + RMER15 LTR ERVL 1 91 -484 6 1525 371 191 101 81 chr1 123277704 123277852 -73917580 + Lx4B LINE L1 6904 7054 -4 6 1525 183 85 42 21 chr1 123278062 123278110 -73917322 + (TTG)n Simple_repeat Simple_repeat 3 51 0 6 1525 526 196 16 71 chr1 123278119 123278245 -73917187 - PB1D9 SINE Alu -1 119 1 6 1525 397 295 0 80 chr1 123278743 123278905 -73916527 + B4A SINE B4 3 151 -141 6 1525 12602 57 0 0 chr1 123278905 123280643 -73914789 - L1Md_F2 LINE L1 -539 6043 4305 6 1525 3648 93 10 10 chr1 123280643 123281164 -73914268 + L1Md_F2 LINE L1 6061 6581 -1 6 1525 317 232 150 10 chr1 123281166 123281266 -73914166 + B4A SINE B4 155 268 -24 6 1525 189 121 0 0 chr1 123281292 123281325 -73914107 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1525 747 182 153 11 chr1 123281532 123281715 -73913717 - ORR1D1 LTR MaLR 0 374 166 6 1525 207 158 0 50 chr1 123281716 123281756 -73913676 + polypurine Low_complexity Low_complexity 4 41 0 6 1525 225 243 143 0 chr1 123281756 123281826 -73913606 - ORR1D1 LTR MaLR -191 183 104 6 1525 288 91 0 0 chr1 123281909 123281953 -73913479 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1525 329 268 20 10 chr1 123281964 123282062 -73913370 - B4 SINE B4 -10 282 184 6 1525 644 259 0 89 chr1 123282203 123282406 -73913026 - B4 SINE B4 -107 185 1 6 1525 249 217 171 14 chr1 123282486 123282556 -73912876 - ID2 SINE ID -2 81 1 6 1525 194 361 56 0 chr1 123282708 123282816 -73912616 + MIRc SINE MIR 38 151 -117 6 1525 442 333 14 14 chr1 123282912 123283055 -73912377 + B4 SINE B4 81 223 -69 6 1525 573 52 0 0 chr1 123283145 123283222 -73912210 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 6 1525 570 273 26 52 chr1 123283311 123283504 -73911928 + L1MA5 LINE L1 5709 5896 -404 6 1525 489 331 19 31 chr1 123283694 123283856 -73911576 - ID_B1 SINE B4 -16 208 49 6 1525 303 288 116 6 chr1 123283865 123284029 -73911403 + L1MA5 LINE L1 6104 6285 -15 6 1525 336 304 100 14 chr1 123284073 123284213 -73911219 - RSINE1 SINE B4 0 165 14 6 1525 204 40 0 0 chr1 123284897 123284922 -73910510 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1525 440 240 73 16 chr1 123285459 123285582 -73909850 + RSINE1 SINE B4 1 130 -35 6 1525 527 198 84 79 chr1 123286233 123286447 -73908985 + B3 SINE B2 2 216 0 6 1525 311 78 20 0 chr1 123288183 123288234 -73907198 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1525 512 237 148 0 chr1 123288333 123288468 -73906964 + RSINE1 SINE B4 3 157 -8 6 1525 24 53 0 0 chr1 123288468 123288506 -73906926 + AT_rich Low_complexity Low_complexity 1 38 0 6 1525 297 128 0 0 chr1 123289498 123289545 -73905887 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 6 1525 246 62 0 0 chr1 123290166 123290198 -73905234 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1525 400 309 86 20 chr1 123290730 123290882 -73904550 - RSINE1 SINE B4 -2 163 2 6 1525 201 156 0 0 chr1 123290889 123290921 -73904511 + (TTG)n Simple_repeat Simple_repeat 3 34 0 6 1525 198 103 0 0 chr1 123290921 123290950 -73904482 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1525 921 162 0 39 chr1 123290956 123291110 -73904322 - B1_Mur3 SINE Alu -1 148 1 6 1525 186 295 0 0 chr1 123291147 123291252 -73904180 + (TG)n Simple_repeat Simple_repeat 2 106 0 6 1525 974 259 65 29 chr1 123292247 123292525 -73902907 + B4 SINE B4 2 289 -3 6 1525 377 224 87 13 chr1 123293062 123293190 -73902242 + MIRm SINE MIR 22 165 -111 6 1525 356 278 8 21 chr1 123293382 123293478 -73901954 + B4 SINE B4 4 108 -57 6 1525 729 313 45 31 chr1 123293478 123293765 -73901667 + B4A SINE B4 1 291 -1 6 1525 231 304 110 7 chr1 123293765 123293814 -73901618 + RSINE1 SINE B4 109 164 -1 6 1525 329 338 45 38 chr1 123293851 123294008 -73901424 + B4 SINE B4 125 282 -10 6 1525 988 230 24 0 chr1 123294191 123294400 -73901032 + B3 SINE B2 3 216 0 6 1525 25 51 0 0 chr1 123294411 123294450 -73900982 + AT_rich Low_complexity Low_complexity 1 39 0 6 1525 471 226 76 229 chr1 123295079 123295181 -73900251 + B4 SINE B4 26 88 -204 6 1525 243 0 0 0 chr1 123295181 123295208 -73900224 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1525 471 226 76 229 chr1 123295208 123295420 -73900012 + B4 SINE B4 89 292 0 6 1525 203 204 19 0 chr1 123297188 123297242 -73898190 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1525 496 329 13 20 chr1 123297245 123297397 -73898035 - RSINE1 SINE B4 0 165 15 6 1525 237 287 80 65 chr1 123297484 123297622 -73897810 - MER2 DNA MER2_type -4 341 202 6 1525 828 230 100 0 chr1 123297628 123297828 -73897604 + ID_B1 SINE B4 5 224 0 6 1525 513 297 161 46 chr1 123297867 123298100 -73897332 + B4 SINE B4 1 271 -21 6 1525 231 36 0 0 chr1 123298100 123298128 -73897304 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1525 513 297 161 46 chr1 123298128 123298155 -73897277 + B4 SINE B4 272 291 -1 6 1525 384 275 117 26 chr1 123298502 123298673 -73896759 + B4 SINE B4 3 187 -105 6 1525 885 292 92 0 chr1 123298977 123299237 -73896195 - B4 SINE B4 -7 285 2 6 1525 525 16 0 0 chr1 123299583 123299645 -73895787 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1525 271 288 99 86 chr1 123299653 123299805 -73895627 + B4A SINE B4 135 288 -4 6 1525 180 0 0 0 chr1 123300624 123300644 -73894788 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1525 180 0 0 0 chr1 123300644 123300663 -73894769 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1525 192 77 0 0 chr1 123300770 123300796 -73894636 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1525 621 0 0 0 chr1 123300797 123300866 -73894566 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1525 3253 179 34 10 chr1 123300975 123301567 -73893865 - Lx9 LINE L1 -341 7303 6698 6 1525 1047 234 53 89 chr1 123301573 123302010 -73893422 - Lx9 LINE L1 -1363 6281 5861 6 1525 284 79 0 0 chr1 123302554 123302592 -73892840 - L1_Mm LINE L1 -429 5454 5417 6 1525 5586 42 1 3 chr1 123302592 123303263 -73892169 + L1Md_F2 LINE L1 5910 6579 -3 6 1525 570 182 0 0 chr1 123303286 123303396 -73892036 + GA-rich Low_complexity Low_complexity 2 111 0 6 1525 924 233 3 125 chr1 123303800 123304104 -73891328 + B4 SINE B4 3 269 -23 6 1525 328 336 67 97 chr1 123304918 123305181 -73890251 - B4A SINE B4 0 292 38 6 1525 2022 98 11 122 chr1 123305181 123305551 -73889881 + ORR1A4 LTR MaLR 1 329 0 6 1525 328 336 67 97 chr1 123305551 123305587 -73889845 - B4A SINE B4 -255 37 2 6 1525 182 37 37 0 chr1 123305716 123305743 -73889689 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6 1525 370 210 0 0 chr1 123305743 123305805 -73889627 - Lx8 LINE L1 -147 7326 7265 6 1525 401 211 21 21 chr1 123305890 123305987 -73889445 - B4A SINE B4 -195 97 1 6 1525 348 299 53 46 chr1 123306389 123306540 -73888892 + Lx8 LINE L1 7148 7299 -174 6 1525 2486 237 65 25 chr1 123306698 123307472 -73887960 + RLTR40 LTR ERVK 2 806 -11 6 1525 2294 209 36 25 chr1 123307610 123308166 -73887266 - RLTR20B1 LTR ERVK 0 563 2 6 1525 2262 155 42 0 chr1 123308172 123308597 -73886835 - MYSERV16_I-int LTR ERVK -4 2322 1880 6 1525 449 257 9 37 chr1 123308968 123309077 -73886355 + ID_B1 SINE B4 2 107 -117 6 1525 778 218 56 15 chr1 123309077 123309232 -73886200 + ORR1D1 LTR MaLR 1 164 -210 6 1525 585 0 0 0 chr1 123309232 123309297 -73886135 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1525 778 218 56 15 chr1 123309297 123309337 -73886095 + ORR1D1 LTR MaLR 165 203 -171 6 1525 263 235 96 24 chr1 123309337 123309420 -73886012 + PB1D10 SINE Alu 19 107 -10 6 1525 361 349 19 13 chr1 123309421 123309575 -73885857 + RSINE1 SINE B4 3 157 -8 6 1525 239 133 0 22 chr1 123309581 123309627 -73885805 + (CCA)n Simple_repeat Simple_repeat 1 45 0 6 1525 1520 188 171 14 chr1 123309761 123310123 -73885309 + MTD LTR MaLR 1 419 0 6 1525 440 156 9 0 chr1 123310512 123310621 -73884811 + CT-rich Low_complexity Low_complexity 1 110 0 6 1525 324 0 0 0 chr1 123310621 123310657 -73884775 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1525 1121 73 0 0 chr1 123311547 123311697 -73883735 - L1_Mus1 LINE L1 0 6567 6418 6 1525 835 264 24 19 chr1 123311978 123312190 -73883242 - B4A SINE B4 -66 226 14 6 1525 272 191 32 11 chr1 123313524 123313619 -73881813 + CT-rich Low_complexity Low_complexity 2 98 0 6 1525 180 111 0 0 chr1 123314280 123314307 -73881125 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1525 1515 241 55 5 chr1 123314416 123314813 -73880619 - MTD LTR MaLR -2 417 1 6 1525 227 254 0 0 chr1 123314886 123314941 -73880491 - ID_B1 SINE B4 -55 169 115 6 1525 755 173 14 0 chr1 123315255 123315394 -73880038 - B1_Mur1 SINE Alu 0 149 9 6 1525 255 250 29 130 chr1 123315270 123315408 -73880024 - MT2B LTR ERVL -319 282 159 6 1525 216 0 0 0 chr1 123315595 123315619 -73879813 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1525 1337 209 128 23 chr1 123316051 123316092 -73879340 - MTEb LTR MaLR 0 379 335 6 1525 945 122 0 0 chr1 123316092 123316239 -73879193 + (GAA)n Simple_repeat Simple_repeat 2 148 0 6 1525 1337 209 128 23 chr1 123316239 123316540 -73878892 - MTEb LTR MaLR -45 334 1 6 1525 1057 154 108 19 chr1 123316603 123316815 -73878617 + ORR1C1 LTR MaLR 9 239 -139 6 1525 552 209 60 37 chr1 123316899 123317033 -73878399 - RSINE1 SINE B4 -14 151 15 6 1525 421 258 40 16 chr1 123317705 123317831 -73877601 - RSINE1 SINE B4 -2 163 35 6 1525 1117 154 211 4 chr1 123317847 123318094 -73877338 - ORR1B1 LTR MaLR 0 394 97 6 1525 507 219 28 49 chr1 123318862 123319006 -73876426 + B4A SINE B4 16 156 -136 6 1525 360 0 0 0 chr1 123319201 123319241 -73876191 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1525 508 294 68 0 chr1 123319252 123319398 -73876034 - B3A SINE B2 -42 156 1 6 1525 981 262 68 63 chr1 123319478 123319865 -73875567 + MTD LTR MaLR 5 398 -9 6 1525 2042 124 3 69 chr1 123319930 123320277 -73875155 - ORR1A3 LTR MaLR -2 324 1 6 1525 615 304 53 40 chr1 123320836 123321083 -73874349 + B4A SINE B4 43 292 0 7 1525 654 134 14 0 chr1 123321124 123321350 -73874082 + (TA)n Simple_repeat Simple_repeat 1 229 0 7 1525 252 0 0 0 chr1 123321352 123321380 -73874052 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1525 220 286 0 0 chr1 123321864 123321920 -73873512 + L2a LINE L2 3333 3388 -38 7 1525 846 280 17 31 chr1 123321979 123322270 -73873162 + B4 SINE B4 1 287 -5 7 1525 306 0 0 0 chr1 123322331 123322365 -73873067 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1525 303 266 0 0 chr1 123322614 123322787 -73872645 + (TG)n Simple_repeat Simple_repeat 1 173 0 7 1525 414 201 21 65 chr1 123322792 123322978 -73872454 + (TGGG)n Simple_repeat Simple_repeat 2 179 0 7 1525 1025 136 136 0 chr1 123323173 123323364 -73872068 + URR1A DNA MER1_type 10 226 0 7 1525 514 239 30 7 chr1 123323436 123323571 -73871861 + B1F SINE Alu 10 147 -2 7 1525 395 166 18 2 chr1 123323754 123323836 -73871596 + B4 SINE B4 12 96 -69 7 1525 565 158 8 8 chr1 123323836 123323957 -73871475 + GA-rich Low_complexity Low_complexity 1 121 0 7 1525 571 215 178 0 chr1 123323978 123324113 -73871319 + B3A SINE B2 2 160 -38 7 1525 225 0 0 0 chr1 123324119 123324144 -73871288 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1525 557 196 62 0 chr1 123324152 123324264 -73871168 - MTD LTR MaLR -20 399 281 7 1525 290 296 19 75 chr1 123324356 123324462 -73870970 + B3A SINE B2 80 179 -37 7 1525 592 278 11 11 chr1 123324819 123324997 -73870435 - B4 SINE B4 -98 194 17 7 1525 1205 218 140 40 chr1 123325171 123325656 -73869776 - MT2B LTR ERVL 0 601 32 7 1525 1922 161 32 12 chr1 123325656 123326002 -73869430 + ORR1B1 LTR MaLR 1 353 -41 7 1525 938 113 21 0 chr1 123326004 123326146 -73869286 + B1_Mus2 SINE Alu 2 146 -1 7 1525 850 267 14 14 chr1 123326187 123326400 -73869032 + B3 SINE B2 4 216 0 7 1525 225 0 0 0 chr1 123327274 123327299 -73868133 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1525 330 239 8 93 chr1 123327391 123327520 -73867912 + A-rich Low_complexity Low_complexity 4 121 0 7 1525 204 122 0 0 chr1 123329006 123329047 -73866385 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1525 819 261 91 8 chr1 123329057 123329300 -73866132 - B4 SINE B4 -1 291 29 7 1525 258 178 0 240 chr1 123329489 123329585 -73865847 + B1F SINE Alu 77 149 0 7 1525 522 229 91 21 chr1 123329711 123329898 -73865534 + ID_B1 SINE B4 24 223 -1 7 1525 279 283 19 48 chr1 123330198 123330302 -73865130 - B2_Mm2 SINE B2 -94 101 1 7 1525 265 289 13 0 chr1 123330669 123330745 -73864687 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1525 699 285 42 25 chr1 123330772 123331013 -73864419 - B4A SINE B4 -4 288 44 7 1525 426 165 0 0 chr1 123331453 123331532 -73863900 + B4 SINE B4 8 86 -206 7 1525 615 164 0 0 chr1 123331537 123331665 -73863767 + GA-rich Low_complexity Low_complexity 3 130 0 7 1525 699 262 36 20 chr1 123331666 123331861 -73863571 + B4 SINE B4 85 282 -10 7 1525 201 250 0 0 chr1 123331869 123331917 -73863515 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1525 495 221 322 0 chr1 123332118 123332267 -73863165 - B3A SINE B2 0 198 2 7 1525 243 294 87 13 chr1 123332298 123332426 -73863006 - L2c LINE L2 -25 3350 3213 7 1525 694 150 160 46 chr1 123332766 123332941 -73862491 + B2_Mm2 SINE B2 1 195 0 7 1525 406 274 102 16 chr1 123332966 123333187 -73862245 + B4A SINE B4 6 277 -15 7 1525 292 359 14 103 chr1 123333724 123333870 -73861562 - MER3 DNA MER1_type -74 135 3 7 1525 993 262 46 21 chr1 123333928 123334212 -73861220 + B4 SINE B4 2 292 0 7 1525 189 195 0 0 chr1 123334212 123334253 -73861179 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1525 579 51 0 0 chr1 123334588 123334667 -73860765 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1525 978 266 17 87 chr1 123334667 123334885 -73860547 - B4 SINE B4 -23 269 68 7 1525 360 0 0 0 chr1 123334885 123334925 -73860507 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1525 978 266 17 87 chr1 123334925 123334994 -73860438 - B4 SINE B4 -225 67 2 7 1525 644 143 7 0 chr1 123335263 123335403 -73860029 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1525 322 305 127 7 chr1 123335404 123335510 -73859922 - RSINE1 SINE B4 -1 164 41 7 1525 1149 62 14 0 chr1 123335510 123335654 -73859778 - B1_Mus2 SINE Alu 0 147 2 7 1525 322 305 127 7 chr1 123335654 123335689 -73859743 - RSINE1 SINE B4 -125 40 6 7 1525 208 285 139 46 chr1 123335745 123335896 -73859536 - L2a LINE L2 0 3426 3262 7 1525 538 279 28 42 chr1 123335896 123335993 -73859439 + B3A SINE B2 1 101 -97 7 1525 1830 195 96 3 chr1 123335993 123336378 -73859054 - MTC LTR MaLR 0 421 1 7 1525 538 279 28 42 chr1 123336378 123336422 -73859010 + B3A SINE B2 102 140 -58 7 1525 621 263 58 0 chr1 123336522 123336678 -73858754 - RSINE1 SINE B4 0 165 1 7 1525 221 303 0 57 chr1 123336817 123336828 -73858604 + B4 SINE B4 80 86 -206 7 1525 452 333 0 0 chr1 123336828 123336939 -73858493 + PB1D10 SINE Alu 2 112 -5 7 1525 1019 259 119 17 chr1 123337014 123337375 -73858057 - MTD LTR MaLR -3 416 19 7 1525 228 306 35 44 chr1 123337656 123337769 -73857663 - LTR50 LTR ERVL -613 182 71 7 1525 513 268 96 19 chr1 123337945 123338101 -73857331 + ID_B1 SINE B4 55 222 -2 7 1526 372 338 14 0 chr1 123338834 123338973 -73856459 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1526 185 65 0 31 chr1 123339399 123339431 -73856001 + (TTG)n Simple_repeat Simple_repeat 3 33 0 7 1526 517 214 121 8 chr1 123339431 123339563 -73855869 - B1_Mus2 SINE Alu 0 147 1 7 1526 741 264 62 169 chr1 123339565 123339985 -73855447 + MTE2a LTR MaLR 5 379 0 7 1526 217 48 0 67 chr1 123340209 123340254 -73855178 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1526 489 285 30 30 chr1 123340323 123340457 -73854975 + RSINE1 SINE B4 13 146 -19 7 1526 336 64 0 0 chr1 123340721 123340768 -73854664 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1526 2128 151 109 144 chr1 123340829 123341424 -73854008 - RMER15 LTR ERVL -1 574 1 7 1526 189 0 0 0 chr1 123341790 123341811 -73853621 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 7 1526 341 224 113 53 chr1 123341854 123341879 -73853553 + PB1D7 SINE Alu 18 67 -81 7 1526 389 214 0 0 chr1 123341879 123341949 -73853483 + ID_B1 SINE B4 153 222 -2 7 1526 341 224 113 53 chr1 123341949 123341985 -73853447 + PB1D7 SINE Alu 68 144 -4 7 1526 605 253 57 17 chr1 123342398 123342575 -73852857 - B3A SINE B2 -14 184 1 7 1526 2591 101 58 0 chr1 123342575 123342970 -73852462 - BGLII_B LTR ERVK -23 418 1 7 1526 572 267 141 35 chr1 123343168 123343451 -73851981 - Lx8 LINE L1 -326 7147 6835 7 1526 897 213 88 109 chr1 123343720 123343994 -73851438 - B4A SINE B4 -23 269 2 7 1526 715 290 108 4 chr1 123344365 123344625 -73850807 + B4 SINE B4 2 288 -4 7 1526 569 180 43 51 chr1 123346056 123346173 -73849259 - PB1D10 SINE Alu -1 116 1 7 1526 1418 230 39 87 chr1 123346532 123346922 -73848510 + MTE2a LTR MaLR 2 372 -7 7 1526 710 234 27 33 chr1 123347438 123347588 -73847844 + RSINE1 SINE B4 1 149 -16 7 1526 400 279 228 9 chr1 123347736 123347964 -73847468 + B4 SINE B4 1 278 -14 7 1526 341 306 10 0 chr1 123348252 123348350 -73847082 - RSINE1 SINE B4 -66 99 1 7 1526 659 249 55 37 chr1 123348831 123349048 -73846384 - ID_B1 SINE B4 -3 221 1 7 1526 313 252 288 16 chr1 123349548 123349673 -73845759 + RSINE1 SINE B4 3 161 -4 7 1526 365 231 71 71 chr1 123350144 123350242 -73845190 + PB1 SINE Alu 23 120 -7 7 1526 1207 224 129 10 chr1 123350312 123350623 -73844809 - ORR1E LTR MaLR -11 348 1 7 1526 527 260 189 63 chr1 123351252 123351477 -73843955 - MTE2a LTR MaLR 0 379 135 7 1526 351 0 0 0 chr1 123351477 123351516 -73843916 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1526 527 260 189 63 chr1 123351516 123351623 -73843809 - MTE2a LTR MaLR -245 134 5 7 1526 408 261 34 51 chr1 123351673 123351790 -73843642 + ID_B1 SINE B4 55 169 -55 7 1526 1208 67 0 22 chr1 123351798 123351982 -73843450 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 7 1526 744 308 81 51 chr1 123352167 123352502 -73842930 - MTE2a LTR MaLR -34 345 1 7 1526 874 228 51 43 chr1 123352771 123353005 -73842427 + B4 SINE B4 57 292 0 7 1526 186 43 0 0 chr1 123353032 123353055 -73842377 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 7 1526 720 20 10 20 chr1 123353156 123353256 -73842176 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 7 1526 737 177 14 28 chr1 123353299 123353444 -73841988 + B1_Mur1 SINE Alu 1 143 -6 7 1526 270 0 0 0 chr1 123353449 123353479 -73841953 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1526 228 170 21 0 chr1 123354096 123354143 -73841289 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1526 273 125 0 0 chr1 123354143 123354199 -73841233 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1526 7419 12 5 0 chr1 123354229 123355047 -73840385 - RLTR13B2 LTR ERVK 0 822 1 7 1526 509 226 9 28 chr1 123355056 123355165 -73840267 - RSINE1 SINE B4 -57 108 2 7 1526 827 283 13 54 chr1 123355413 123355652 -73839780 + B4 SINE B4 2 230 -62 7 1526 638 274 163 25 chr1 123355777 123355979 -73839453 - RMER5 LTR ERV1 -71 463 234 7 1526 512 257 285 24 chr1 123356037 123356328 -73839104 - RMER5 LTR ERV1 -112 422 56 7 1526 1007 213 64 52 chr1 123357650 123357917 -73837515 + B4A SINE B4 1 270 -22 7 1526 360 0 0 0 chr1 123357920 123357960 -73837472 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1526 502 252 108 23 chr1 123360286 123360416 -73835016 - RSINE1 SINE B4 -22 143 3 7 1526 792 237 115 71 chr1 123360494 123360860 -73834572 - MTE2a LTR MaLR -8 411 22 8 1526 330 218 27 13 chr1 123361445 123361594 -73833838 + (TATG)n Simple_repeat Simple_repeat 2 152 0 8 1526 521 311 0 56 chr1 123361667 123361810 -73833622 - RSINE1 SINE B4 -28 137 3 8 1526 526 248 51 0 chr1 123363499 123363636 -73831796 - RSINE1 SINE B4 -17 148 5 8 1526 203 331 85 16 chr1 123363808 123363937 -73831495 - MIRb SINE MIR -106 162 25 8 1526 387 0 0 0 chr1 123364237 123364280 -73831152 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1526 198 0 0 0 chr1 123364485 123364507 -73830925 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1526 1235 48 0 0 chr1 123364507 123364654 -73830778 - B1_Mus2 SINE Alu 0 147 1 8 1526 325 222 96 14 chr1 123364781 123364854 -73830578 + RSINE1 SINE B4 79 157 -8 8 1526 951 307 18 63 chr1 123365265 123365404 -73830028 - Lx8 LINE L1 -1 7472 7344 8 1526 342 0 0 0 chr1 123365404 123365442 -73829990 + (TGG)n Simple_repeat Simple_repeat 1 38 0 8 1526 951 307 18 63 chr1 123365442 123365796 -73829636 - Lx8 LINE L1 -130 7343 7001 8 1526 937 296 20 24 chr1 123366491 123366737 -73828695 + B4 SINE B4 42 286 -6 8 1526 210 154 0 0 chr1 123366742 123366781 -73828651 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1526 606 235 37 80 chr1 123367063 123367225 -73828207 - RSINE1 SINE B4 -7 158 4 8 1526 605 217 26 65 chr1 123367390 123367565 -73827867 - ID_B1 SINE B4 -54 238 67 8 1526 274 203 172 0 chr1 123368024 123368088 -73827344 + ID2 SINE ID 6 80 -3 8 1526 719 227 33 7 chr1 123368950 123369101 -73826331 + B4A SINE B4 1 155 -137 8 1526 1735 173 338 2 chr1 123369371 123369405 -73826027 - MT2A LTR ERVL 0 533 466 8 1526 261 0 0 0 chr1 123369405 123369434 -73825998 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1526 1735 173 338 2 chr1 123369434 123369798 -73825634 - MT2A LTR ERVL -68 465 2 8 1526 331 297 89 9 chr1 123369934 123370046 -73825386 - Charlie1 DNA MER1_type -2579 202 82 8 1526 205 269 0 0 chr1 123370405 123370457 -73824975 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1526 475 250 217 0 chr1 123370457 123370513 -73824919 + ID_B1 SINE B4 10 98 -126 8 1526 273 265 0 109 chr1 123370513 123370623 -73824809 + PB1D7 SINE Alu 3 100 -20 8 1526 437 306 8 0 chr1 123371049 123371170 -73824262 - MTE2b LTR MaLR -256 123 2 8 1526 526 316 36 36 chr1 123371237 123371431 -73824001 - B3A SINE B2 -4 194 1 8 1526 183 42 0 0 chr1 123371563 123371587 -73823845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1526 293 200 56 14 chr1 123371637 123371708 -73823724 - RSINE1 SINE B4 -29 136 63 8 1526 346 324 141 42 chr1 123372143 123372285 -73823147 - RSINE1 SINE B4 -8 157 2 8 1526 420 20 0 0 chr1 123372894 123372943 -73822489 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1526 579 292 90 40 chr1 123372962 123373240 -73822192 - B4A SINE B4 0 292 1 8 1526 627 299 18 18 chr1 123373240 123373407 -73822025 + MER58B DNA MER1_type 172 338 -3 8 1526 490 284 73 34 chr1 123373429 123373633 -73821799 + B3 SINE B2 3 214 -2 8 1526 266 310 48 39 chr1 123374017 123374121 -73821311 + B4A SINE B4 12 116 -176 8 1526 245 309 59 0 chr1 123374190 123374258 -73821174 + ID4_ SINE ID 10 81 -2 8 1526 1295 242 19 107 chr1 123374933 123375345 -73820087 - MTE2b LTR MaLR -2 377 2 8 1526 243 0 0 0 chr1 123375941 123375968 -73819464 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1526 548 219 171 0 chr1 123375992 123376115 -73819317 - RSINE1 SINE B4 -19 146 3 8 1526 494 243 167 43 chr1 123376211 123376469 -73818963 + B4A SINE B4 1 290 -2 8 1526 2459 155 50 5 chr1 123376578 123376981 -73818451 - MTC LTR MaLR 0 421 1 8 1526 239 222 0 0 chr1 123377017 123377062 -73818370 + CT-rich Low_complexity Low_complexity 5 49 0 8 1526 207 0 0 0 chr1 123377065 123377088 -73818344 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1526 734 269 46 10 chr1 123377733 123377928 -73817504 + B4 SINE B4 3 204 -88 8 1526 246 224 0 17 chr1 123377996 123378055 -73817377 + RSINE1 SINE B4 100 157 -8 8 1526 231 188 0 0 chr1 123378194 123378242 -73817190 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1526 318 26 0 0 chr1 123378360 123378399 -73817033 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1526 220 194 70 56 chr1 123378754 123378825 -73816607 + B4 SINE B4 2 73 -219 8 1526 552 326 7 7 chr1 123378907 123379046 -73816386 + RSINE1 SINE B4 8 146 -19 8 1526 180 77 0 0 chr1 123379060 123379086 -73816346 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1526 370 277 74 101 chr1 123379302 123379519 -73815913 - RMER15 LTR ERVL -40 535 325 8 1526 490 228 10 10 chr1 123379670 123379767 -73815665 + B4A SINE B4 2 98 -194 8 1526 241 201 0 3 chr1 123379767 123379815 -73815617 + B3A SINE B2 1 47 -148 8 1526 280 184 34 79 chr1 123380000 123380177 -73815255 + (CTCTG)n Simple_repeat Simple_repeat 1 169 0 8 1526 302 278 116 36 chr1 123381886 123381998 -73813434 - RMER30 DNA MER1_type -60 142 22 8 1526 339 78 0 0 chr1 123382000 123382051 -73813381 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1526 539 262 14 34 chr1 123382773 123382919 -73812513 + RSINE1 SINE B4 2 144 -21 8 1526 483 237 14 41 chr1 123383506 123383651 -73811781 + B3A SINE B2 55 195 -3 8 1526 1094 184 29 19 chr1 123383678 123383888 -73811544 + B3 SINE B2 1 212 -4 8 1526 608 225 0 40 chr1 123384329 123384454 -73810978 - ID_B1 SINE B4 -17 207 88 8 1526 251 247 46 69 chr1 123384381 123384468 -73810964 - MT2B LTR ERVL -364 237 153 8 1526 402 285 100 65 chr1 123384959 123385220 -73810212 + B4 SINE B4 8 280 -12 8 1526 452 235 76 0 chr1 123385517 123385649 -73809783 + Lx6 LINE L1 7222 7363 -97 8 1526 615 287 141 62 chr1 123385776 123386096 -73809336 - RMER15 LTR ERVL -12 563 219 8 1526 404 277 89 0 chr1 123387025 123387137 -73808295 + RSINE1 SINE B4 27 148 -17 8 1526 1467 78 21 0 chr1 123387941 123388132 -73807300 + B2_Mm2 SINE B2 1 195 0 8 1526 22 56 0 0 chr1 123388457 123388493 -73806939 + AT_rich Low_complexity Low_complexity 1 36 0 8 1526 521 273 38 70 chr1 123388645 123388855 -73806577 - BGLII_B LTR ERVK -223 218 16 8 1526 586 304 28 116 chr1 123388855 123388968 -73806464 + B4 SINE B4 1 110 -182 8 1526 736 247 82 0 chr1 123388968 123389150 -73806282 + B3 SINE B2 3 199 -17 8 1526 709 242 5 68 chr1 123389150 123389356 -73806076 + B4A SINE B4 111 292 0 8 1526 646 250 8 0 chr1 123389636 123389768 -73805664 - RSINE1 SINE B4 -29 136 4 8 1526 1166 216 10 84 chr1 123390005 123390314 -73805118 + B4 SINE B4 1 286 -6 8 1526 600 264 20 54 chr1 123391139 123391343 -73804089 + B4 SINE B4 13 209 -83 8 1526 603 169 103 0 chr1 123391345 123391481 -73803951 + Lx3B LINE L1 6820 6969 -4 8 1526 725 233 47 37 chr1 123391570 123391784 -73803648 + ID_B1 SINE B4 5 220 -4 8 1526 495 107 0 0 chr1 123392088 123392172 -73803260 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1526 2626 135 62 18 chr1 123392173 123392611 -73802821 - RMER6B LTR ERVK -3 458 2 8 1526 405 90 0 0 chr1 123392617 123392684 -73802748 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1526 637 233 176 23 chr1 123393949 123394125 -73801307 + B4 SINE B4 90 292 0 8 1526 187 111 27 27 chr1 123394199 123394236 -73801196 + L3 LINE CR1 3739 3775 -714 8 1526 222 118 0 0 chr1 123394376 123394410 -73801022 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 8 1526 633 306 11 37 chr1 123394520 123394707 -73800725 + B4 SINE B4 49 230 -62 8 1526 2878 53 252 5 chr1 123394736 123395152 -73800280 - MURVY-LTR LTR ERV1 0 519 1 8 1526 410 332 111 25 chr1 123395370 123395568 -73799864 - MER20 DNA MER1_type 0 219 5 8 1526 531 259 31 103 chr1 123395971 123396165 -73799267 + B4 SINE B4 1 180 -112 8 1526 643 255 85 0 chr1 123396174 123396315 -73799117 + RSINE1 SINE B4 9 161 -4 8 1526 292 341 0 33 chr1 123396327 123396418 -73799014 + B4 SINE B4 201 288 -4 8 1526 438 20 0 0 chr1 123396430 123396481 -73798951 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1526 288 190 37 25 chr1 123396691 123396772 -73798660 - L2b LINE L2 -81 3345 3240 8 1526 723 263 91 33 chr1 123396983 123397258 -73798174 - B4A SINE B4 -1 291 1 8 1526 206 170 21 0 chr1 123397617 123397664 -73797768 + A-rich Low_complexity Low_complexity 3 50 0 8 1526 189 317 96 12 chr1 123398155 123398238 -73797194 - L2c LINE L2 -3 3384 3295 8 1526 549 296 69 16 chr1 123399289 123399478 -73795954 - RMER30 DNA MER1_type -2 200 2 8 1526 1082 286 49 3 chr1 123399589 123399936 -73795496 - Lx8 LINE L1 -783 6690 6328 8 1526 297 0 0 0 chr1 123400281 123400314 -73795118 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1526 1092 227 102 4 chr1 123401371 123401636 -73793796 + B4A SINE B4 2 292 0 8 1526 401 303 187 49 chr1 123402503 123402829 -73792603 + L1MC4a LINE L1 5602 5972 -1910 8 1526 705 220 154 0 chr1 123403138 123403320 -73792112 - ID_B1 SINE B4 -11 213 4 8 1526 749 173 75 0 chr1 123403391 123403524 -73791908 - B1_Mus2 SINE Alu -4 143 1 8 1526 1597 39 65 25 chr1 123403565 123404053 -73791379 + RLTR6_Mm LTR ERV1 1 622 -32 8 1526 920 213 170 145 chr1 123404399 123404903 -73790529 + MT2A LTR ERVL 1 544 -40 8 1526 207 0 0 0 chr1 123404903 123404926 -73790506 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1526 920 198 194 152 chr1 123404926 123404971 -73790461 + MT2A LTR ERVL 489 533 0 8 1526 660 232 148 22 chr1 123405316 123405587 -73789845 + MTD LTR MaLR 5 349 -70 8 1526 1254 227 157 33 chr1 123405624 123405956 -73789476 - MTEb LTR MaLR 0 379 7 9 1526 921 130 7 14 chr1 123405987 123406135 -73789297 + B1_Mur1 SINE Alu 1 147 -2 9 1526 504 293 24 102 chr1 123406267 123406434 -73788998 - RSINE1 SINE B4 -2 163 10 9 1526 400 288 118 26 chr1 123407341 123407569 -73787863 + L1MCa LINE L1 64 312 -6196 9 1526 878 256 24 10 chr1 123407570 123407779 -73787653 + B4A SINE B4 3 214 -78 9 1526 333 0 0 0 chr1 123407779 123407816 -73787616 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 9 1526 526 298 117 66 chr1 123407824 123408097 -73787335 + B4A SINE B4 2 288 -4 9 1526 353 268 12 24 chr1 123408102 123408186 -73787246 + B4A SINE B4 210 292 0 9 1526 295 311 224 5 chr1 123408311 123408525 -73786907 + L1MCa LINE L1 411 671 -5837 9 1526 704 218 251 12 chr1 123408577 123408912 -73786520 - MTD LTR MaLR 0 419 5 9 1526 291 233 123 59 chr1 123408960 123409179 -73786253 - L1MC LINE L1 -2806 3340 3108 9 1526 338 210 17 197 chr1 123409199 123409268 -73786164 + L1MC LINE L1 4685 4739 -1407 9 1526 638 330 5 0 chr1 123409268 123409465 -73785967 + B3A SINE B2 1 198 0 9 1526 338 210 17 197 chr1 123409465 123409573 -73785859 + L1MC LINE L1 4740 4830 -1316 9 1526 524 106 12 0 chr1 123409576 123409661 -73785771 + (TA)n Simple_repeat Simple_repeat 2 87 0 9 1526 1125 265 32 90 chr1 123409684 123410002 -73785430 + MTE2a LTR MaLR 25 326 -53 9 1526 827 126 117 72 chr1 123410002 123410182 -73785250 - B2_Mm2 SINE B2 -6 189 2 9 1526 1125 265 32 90 chr1 123410182 123410240 -73785192 + MTE2a LTR MaLR 327 379 0 9 1526 628 233 168 93 chr1 123410240 123410302 -73785130 + L1MC LINE L1 4843 4908 -1238 9 1526 733 44 307 0 chr1 123410302 123410416 -73785016 + B1_Mur4 SINE Alu 1 149 -1 9 1526 628 233 168 93 chr1 123410416 123410636 -73784796 + L1MC LINE L1 4909 5157 -989 9 1526 3695 60 42 4 chr1 123410636 123411108 -73784324 + L1_Mus1 LINE L1 6077 6566 -1 9 1526 628 233 168 93 chr1 123411108 123411241 -73784191 + L1MC LINE L1 5158 5290 -856 9 1526 432 305 60 33 chr1 123411253 123411436 -73783996 + B4A SINE B4 2 189 -103 9 1526 793 240 55 16 chr1 123411519 123411701 -73783731 + B3A SINE B2 6 194 -4 9 1526 242 268 28 0 chr1 123411777 123411848 -73783584 + (CATA)n Simple_repeat Simple_repeat 2 74 0 9 1526 8157 49 0 0 chr1 123411996 123413384 -73782048 + L1Md_F2 LINE L1 5168 6555 -27 9 1526 1926 122 6 25 chr1 123413417 123413736 -73781696 + ORR1B2 LTR MaLR 17 367 0 9 1526 246 346 49 0 chr1 123413741 123413822 -73781610 + RSINE1 SINE B4 53 137 -28 9 1526 691 277 68 5 chr1 123413963 123414155 -73781277 + ID_B1 SINE B4 14 217 -7 9 1526 1828 259 53 36 chr1 123414185 123414773 -73780659 + Lx9 LINE L1 6957 7554 -90 9 1526 1153 225 75 15 chr1 123415301 123415567 -73779865 + B4A SINE B4 8 289 -3 9 1526 1083 57 0 21 chr1 123415615 123415758 -73779674 + B1_Mus1 SINE Alu 9 148 0 9 1526 226 111 74 0 chr1 123415826 123415880 -73779552 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 9 1526 353 283 1 4 chr1 123416591 123416675 -73778757 + B4 SINE B4 4 85 -207 9 1526 228 319 0 81 chr1 123416675 123416690 -73778742 + BC1_Mm scRNA scRNA 4 94 -58 9 1526 722 171 24 0 chr1 123416996 123417119 -73778313 + B1_Mur1 SINE Alu 9 134 -15 9 1526 488 149 0 11 chr1 123417667 123417762 -73777670 + GA-rich Low_complexity Low_complexity 1 94 0 9 1526 677 38 28 19 chr1 123417766 123417872 -73777560 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 9 1526 218 308 39 0 chr1 123418485 123418563 -73776869 + ID4_ SINE ID 2 82 -1 9 1526 468 139 0 0 chr1 123418581 123418660 -73776772 + (GA)n Simple_repeat Simple_repeat 1 79 0 9 1526 342 148 0 16 chr1 123418755 123418817 -73776615 + B4 SINE B4 126 186 -106 9 1526 283 0 16 95 chr1 123418920 123418983 -73776449 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 9 1526 366 215 94 31 chr1 123419104 123419200 -73776232 - B4 SINE B4 -65 227 126 9 1526 365 338 14 21 chr1 123419215 123419360 -73776072 - B4 SINE B4 -148 144 1 9 1526 414 176 9 27 chr1 123419642 123419753 -73775679 + (CATA)n Simple_repeat Simple_repeat 2 110 0 9 1526 500 306 76 19 chr1 123420017 123420227 -73775205 - MTD LTR MaLR -161 258 37 9 1526 7194 34 9 0 chr1 123420228 123421072 -73774360 - L1Md_F3 LINE L1 -14 6570 5719 9 1526 618 222 16 23 chr1 123421095 123421224 -73774208 + B1_Mur2 SINE Alu 1 128 -21 9 1526 779 320 80 11 chr1 123421186 123421448 -73773984 - ORR1E LTR MaLR -77 282 3 9 1526 350 266 3 3 chr1 123421644 123421758 -73773674 + ID4 SINE ID 3 116 -36 9 1526 335 247 39 0 chr1 123422192 123422269 -73773163 - B4A SINE B4 -56 236 157 9 1526 870 255 14 9 chr1 123422338 123422552 -73772880 + ID_B1 SINE B4 3 217 -7 9 1526 456 93 0 0 chr1 123422708 123422783 -73772649 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1526 387 0 0 0 chr1 123422783 123422825 -73772607 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1526 360 0 0 0 chr1 123423067 123423107 -73772325 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1526 345 245 60 149 chr1 123423240 123423408 -73772024 + ID_B1 SINE B4 3 155 -69 9 1526 207 0 0 0 chr1 123423430 123423453 -73771979 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1526 965 72 0 0 chr1 123423453 123423569 -73771863 - B1_Mus2 SINE Alu -9 138 23 9 1526 382 234 26 0 chr1 123423559 123423636 -73771796 + ID_B1 SINE B4 138 216 -8 9 1526 453 19 0 0 chr1 123423638 123423692 -73771740 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1526 261 286 0 0 chr1 123425687 123425757 -73769675 - ID4_ SINE ID -1 82 13 9 1526 357 82 0 0 chr1 123425864 123425913 -73769519 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1526 306 0 0 0 chr1 123425913 123425946 -73769486 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1526 571 239 0 103 chr1 123425947 123426092 -73769340 - RSINE1 SINE B4 -34 131 2 9 1526 576 205 101 43 chr1 123426119 123426257 -73769175 + B1_Mus2 SINE Alu 1 146 -1 9 1526 269 265 0 126 chr1 123426468 123426563 -73768869 + ID_B1 SINE B4 91 173 -51 9 1526 612 268 115 51 chr1 123426651 123427017 -73768415 - MTD LTR MaLR -14 405 20 9 1526 339 44 0 0 chr1 123427232 123427277 -73768155 + (GTGTG)n Simple_repeat Simple_repeat 1 45 0 9 1526 363 290 153 24 chr1 123427301 123427555 -73767877 - B4A SINE B4 -4 288 2 9 1526 351 235 15 0 chr1 123427645 123427713 -73767719 + RMER30 DNA MER1_type 128 196 -6 9 1526 777 213 44 33 chr1 123428051 123428231 -73767201 + B3A SINE B2 1 182 -16 9 1526 1068 248 155 27 chr1 123428579 123428915 -73766517 - MTEa LTR MaLR 0 379 1 9 1526 454 178 308 0 chr1 123429110 123429217 -73766215 + B1_Mus1 SINE Alu 1 140 -8 9 1526 675 37 0 0 chr1 123429222 123429304 -73766128 + (GGA)n Simple_repeat Simple_repeat 3 84 0 9 1526 379 224 0 0 chr1 123429324 123429391 -73766041 + B4A SINE B4 106 172 -120 9 1526 1521 137 16 4 chr1 123429386 123429605 -73765827 - MTD-int LTR MaLR -132 1377 1156 9 1526 900 310 19 23 chr1 123429605 123429869 -73765563 + RCHARR1 DNA MER1_type 3 265 -709 9 1526 474 254 30 23 chr1 123429955 123430088 -73765344 + LTR40b LTR ERVL 329 462 0 9 1526 434 187 25 18 chr1 123430382 123430545 -73764887 + (TG)n Simple_repeat Simple_repeat 1 164 0 9 1526 587 280 12 42 chr1 123430545 123430713 -73764719 - RSINE1 SINE B4 0 165 3 9 1526 581 301 45 30 chr1 123430762 123430964 -73764468 - MTD LTR MaLR -206 213 9 9 1526 630 246 0 0 chr1 123431298 123431436 -73763996 + RSINE1 SINE B4 7 144 -21 9 1526 609 260 116 60 chr1 123431476 123431651 -73763781 + Lx8 LINE L1 5511 5690 -157 9 1526 1043 284 38 12 chr1 123431651 123431997 -73763435 - ORR1E LTR MaLR 0 359 5 9 1526 609 281 98 69 chr1 123431997 123432277 -73763155 + Lx8 LINE L1 5691 6004 -1469 9 1526 270 0 0 0 chr1 123432392 123432422 -73763010 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1526 828 242 12 0 chr1 123432427 123432588 -73762844 - B3A SINE B2 -34 164 2 9 1526 627 71 0 0 chr1 123433132 123433217 -73762215 + (GA)n Simple_repeat Simple_repeat 1 85 0 9 1526 783 0 0 0 chr1 123433217 123433304 -73762128 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 9 1526 921 234 19 10 chr1 123433450 123433657 -73761775 + ID_B1 SINE B4 3 211 -13 9 1526 256 230 180 0 chr1 123433794 123433894 -73761538 - MER5A DNA MER1_type 0 189 72 9 1526 1926 121 39 7 chr1 123434224 123434532 -73760900 + ORR1A3 LTR MaLR 1 318 -8 9 1526 654 263 86 0 chr1 123434823 123435009 -73760423 - Lx8 LINE L1 -351 7122 6921 9 1526 960 128 0 0 chr1 123435009 123435142 -73760290 + B2_Mm2 SINE B2 1 133 -62 9 1526 269 106 64 0 chr1 123435537 123435584 -73759848 + B2_Mm2 SINE B2 130 179 -16 9 1526 195 42 0 0 chr1 123435952 123435976 -73759456 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1526 351 0 0 0 chr1 123436159 123436198 -73759234 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1526 233 269 0 71 chr1 123436206 123436262 -73759170 - RSINE1 SINE B4 -42 123 72 9 1526 1605 202 83 28 chr1 123436282 123436728 -73758704 - RMER20B LTR ERVK -36 480 1 9 1526 394 257 0 0 chr1 123436729 123436803 -73758629 - RSINE1 SINE B4 -89 76 3 9 1526 225 0 0 0 chr1 123437258 123437283 -73758149 + (TCC)n Simple_repeat Simple_repeat 3 27 0 9 1526 377 229 26 144 chr1 123437546 123437699 -73757733 + RMER15 LTR ERVL 1 135 -440 9 1526 1513 285 73 27 chr1 123437705 123438291 -73757141 - RLTR18B LTR ERVK -2 614 1 9 1526 1200 236 21 4 chr1 123438303 123438546 -73756886 + RMER15 LTR ERVL 175 421 -154 9 1526 229 306 79 30 chr1 123438475 123438576 -73756856 + Charlie24 DNA MER1_type 1745 1850 -600 9 1526 284 159 0 0 chr1 123438922 123438961 -73756471 + RMER15 LTR ERVL 466 504 -71 9 1526 2350 151 112 87 chr1 123438961 123438987 -73756445 - RMER2 LTR ERV1 0 567 543 9 1526 3163 74 10 10 chr1 123438987 123439394 -73756038 + MTB_Mm LTR MaLR 1 407 0 9 1526 2350 151 112 87 chr1 123439394 123439920 -73755512 - RMER2 LTR ERV1 -25 542 1 9 1526 284 267 26 13 chr1 123440033 123440109 -73755323 + B4A SINE B4 216 292 0 9 1526 778 252 24 30 chr1 123440742 123440955 -73754477 + MTD LTR MaLR 1 208 -211 9 1526 992 124 0 14 chr1 123440955 123441102 -73754330 + B1_Mur4 SINE Alu 4 148 -2 9 1526 417 302 29 100 chr1 123441102 123441127 -73754305 + MTD LTR MaLR 198 222 -178 9 1526 509 267 26 0 chr1 123441650 123441766 -73753666 - B3 SINE B2 -2 214 96 9 1526 683 259 26 93 chr1 123441769 123441995 -73753437 + B3A SINE B2 4 214 -2 9 1526 366 165 0 0 chr1 123442002 123442081 -73753351 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1526 1092 229 90 0 chr1 123442465 123442710 -73752722 + MTEa LTR MaLR 28 294 -85 1 1526 329 250 80 11 chr1 123443196 123443333 -73752099 + MTD LTR MaLR 234 379 0 9 1526 345 256 29 24 chr1 123443378 123443485 -73751947 - B1F SINE Alu -5 112 9 1 1526 341 258 204 36 chr1 123444000 123444137 -73751295 + RSINE1 SINE B4 4 163 -2 1 1526 21 36 0 0 chr1 123444137 123444165 -73751267 + AT_rich Low_complexity Low_complexity 1 28 0 1 1526 384 242 0 0 chr1 123444167 123444262 -73751170 + L1MA6 LINE L1 6150 6244 -56 1 1526 286 228 117 21 chr1 123444411 123444505 -73750927 + B4A SINE B4 130 232 -60 1 1526 230 267 147 0 chr1 123444524 123444599 -73750833 + RSINE1 SINE B4 44 129 -36 1 1526 387 0 0 0 chr1 123444611 123444654 -73750778 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1526 255 326 84 15 chr1 123444716 123444847 -73750585 - MLT1D LTR MaLR -167 338 199 1 1526 21 0 0 0 chr1 123444848 123444869 -73750563 + AT_rich Low_complexity Low_complexity 1 21 0 1 1526 310 279 132 28 chr1 123444899 123445043 -73750389 - RSINE1 SINE B4 0 165 7 1 1526 264 250 47 59 chr1 123445136 123445221 -73750211 - B1F2 SINE Alu -45 104 21 1 1526 2381 104 24 3 chr1 123445413 123445750 -73749682 + ORR1A1 LTR MaLR 1 344 -2 1 1526 535 265 33 39 chr1 123446267 123446420 -73749012 - RSINE1 SINE B4 -12 153 2 1 1526 255 152 0 0 chr1 123447013 123447059 -73748373 + A-rich Low_complexity Low_complexity 1 46 0 1 1526 764 264 56 14 chr1 123447066 123447281 -73748151 + ID_B1 SINE B4 1 224 0 1 1526 566 213 41 0 chr1 123447302 123447424 -73748008 - ID_B1 SINE B4 -5 219 93 1 1526 982 206 240 10 chr1 123447692 123448000 -73747432 - MTEb LTR MaLR 0 379 1 1 1526 227 272 165 0 chr1 123448406 123448509 -73746923 + B1_Mur3 SINE Alu 16 135 -14 1 1526 351 0 0 0 chr1 123448699 123448738 -73746694 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1526 377 292 5 21 chr1 123449353 123449465 -73745967 + B1_Mur3 SINE Alu 2 114 -6 1 1526 1510 43 38 0 chr1 123449868 123450053 -73745379 + B2_Mm1a SINE B2 2 193 0 1 1526 342 0 0 0 chr1 123450318 123450356 -73745076 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1526 21 0 0 0 chr1 123450443 123450464 -73744968 + AT_rich Low_complexity Low_complexity 1 21 0 1 1526 627 236 30 43 chr1 123451409 123451573 -73743859 - RSINE1 SINE B4 0 165 4 1 1526 867 87 134 0 chr1 123452704 123452831 -73742601 - B1_Mus1 SINE Alu 0 148 5 1 1526 254 264 0 0 chr1 123452833 123452886 -73742546 - B1F2 SINE Alu -94 55 3 1 1526 446 276 52 61 chr1 123454492 123454704 -73740728 - B4A SINE B4 -7 285 76 1 1526 237 305 135 10 chr1 123455491 123455587 -73739845 - Lx8 LINE L1 -218 7255 7148 1 1526 291 320 112 13 chr1 123456123 123456275 -73739157 + B4A SINE B4 90 256 -36 1 1526 441 0 0 0 chr1 123456276 123456325 -73739107 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1526 504 246 52 36 chr1 123457311 123457505 -73737927 - B3A SINE B2 -1 197 1 1 1526 786 249 35 0 chr1 123459042 123459239 -73736193 + B3 SINE B2 1 204 -12 1 1526 189 0 0 0 chr1 123459393 123459414 -73736018 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1526 2699 147 183 14 chr1 123459621 123460256 -73735176 + RMER6A LTR ERVK 15 756 0 1 1526 1184 28 7 0 chr1 123461429 123461570 -73733862 + B1_Mus2 SINE Alu 5 146 -1 1 1526 518 217 65 32 chr1 123461628 123461752 -73733680 - B1_Mur4 SINE Alu -22 128 1 1 1526 252 274 124 33 chr1 123461654 123461775 -73733657 - B4A SINE B4 -98 194 63 1 1526 593 209 0 0 chr1 123463095 123463205 -73732227 + B1_Mur3 SINE Alu 9 118 -31 1 1526 767 128 28 21 chr1 123463638 123463782 -73731650 + URR1A DNA MER1_type 81 225 -1 1 1526 381 253 11 0 chr1 123464819 123464910 -73730522 + B1_Mus2 SINE Alu 1 92 -55 1 1526 1103 105 12 0 chr1 123465071 123465243 -73730189 + (TTTTC)n Simple_repeat Simple_repeat 3 176 0 1 1526 522 0 0 0 chr1 123465450 123465508 -73729924 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1526 468 0 0 0 chr1 123465510 123465562 -73729870 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1526 242 222 63 0 chr1 123465616 123465679 -73729753 - ID4_ SINE ID -5 78 12 1 1526 365 235 50 30 chr1 123465712 123465813 -73729619 + B4 SINE B4 1 103 -189 1 1526 1211 188 152 85 chr1 123465884 123466320 -73729112 + MT2B LTR ERVL 1 540 -61 1 1526 446 49 0 16 chr1 123466320 123466382 -73729050 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 1 1526 1211 179 108 55 chr1 123466382 123466426 -73729006 + MT2B LTR ERVL 541 593 -8 1 1526 312 158 0 0 chr1 123466450 123466507 -73728925 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1526 673 288 38 38 chr1 123467084 123467376 -73728056 - B4A SINE B4 0 292 1 1 1526 695 142 79 43 chr1 123467545 123467685 -73727747 + B1_Mur3 SINE Alu 5 149 0 1 190 35047 69 5 5 chr1 123467867 123473866 -73721566 + L1Md_F2 LINE L1 373 6370 -212 1 1527 804 92 0 0 chr1 123473871 123473990 -73721442 + (GGA)n Simple_repeat Simple_repeat 3 121 0 1 1527 538 265 42 21 chr1 123473992 123474231 -73721201 - RMER17C LTR ERVK -166 244 1 1 1527 3007 202 49 20 chr1 123474238 123474833 -73720599 + RMER1B Other Other 413 1024 -42 1 1527 268 281 0 64 chr1 123474847 123475018 -73720414 + G-rich Low_complexity Low_complexity 4 163 0 1 1527 302 155 114 2 chr1 123475109 123475205 -73720227 + RMER1A Other Other 950 1066 0 1 1527 21 0 0 0 chr1 123475231 123475252 -73720180 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 302 327 87 29 chr1 123475277 123475381 -73720051 - RSINE1 SINE B4 0 165 56 1 1527 238 67 44 0 chr1 123475409 123475454 -73719978 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1527 1120 56 14 0 chr1 123475454 123475590 -73719842 - B1_Mus1 SINE Alu -9 139 2 1 1527 2271 120 130 0 chr1 123475591 123475992 -73719440 - MT2B LTR ERVL -7 594 142 1 1527 412 219 12 18 chr1 123476240 123476360 -73719072 + MT2A LTR ERVL 1 118 -415 1 1527 660 205 82 18 chr1 123476390 123476470 -73718962 + MT2A LTR ERVL 67 159 -374 1 1527 1162 196 23 5 chr1 123476470 123476690 -73718742 - URR1B DNA MER1_type -1 224 1 1 1527 660 206 148 48 chr1 123476690 123476806 -73718626 + MT2A LTR ERVL 160 294 -239 1 1527 3737 171 25 6 chr1 123476806 123477452 -73717980 + ERVL-B4-int LTR ERVL 3 660 -5101 1 1527 9164 248 47 25 chr1 123477460 123479775 -73715657 + ERVL-B4-int LTR ERVL 1109 3475 -2239 1 1527 251 291 0 102 chr1 123480053 123480141 -73715291 + RLTR33 LTR ERVK 445 523 -155 1 1527 2096 147 41 12 chr1 123480324 123480662 -73714770 + ERVL-B4-int LTR ERVL 3580 3927 -1834 1 1527 690 176 181 40 chr1 123480668 123480927 -73714505 + MT2A LTR ERVL 103 456 -145 1 1527 534 238 16 32 chr1 123480927 123481053 -73714379 + B1_Mur1 SINE Alu 10 133 -16 1 1527 677 249 47 6 chr1 123481079 123481249 -73714183 + B3A SINE B2 17 193 -5 1 1527 21 0 0 0 chr1 123481960 123481981 -73713451 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 506 294 96 54 chr1 123482008 123482288 -73713144 - B4A SINE B4 0 292 1 1 1527 599 256 44 48 chr1 123482647 123482860 -73712572 + B3A SINE B2 2 216 0 1 1527 1450 201 69 92 chr1 123482874 123483351 -73712081 + RMER4A LTR ERVK 1 466 0 1 1527 517 200 100 0 chr1 123483356 123483496 -73711936 - MER2 DNA MER2_type -97 248 95 1 1527 573 178 134 56 chr1 123483808 123484040 -73711392 + RMER10B LTR ERVL 49 298 -100 1 1527 2873 130 13 2 chr1 123484040 123484494 -73710938 - Lx2 LINE L1 -786 6211 5753 1 1527 3220 186 69 65 chr1 123484495 123484545 -73710887 + RMER13B LTR ERVK 1 40 -868 1 1527 1381 71 27 0 chr1 123484545 123484728 -73710704 - B2_Mm1t SINE B2 -4 189 2 1 1527 3220 186 69 65 chr1 123484728 123485473 -73709959 + RMER13B LTR ERVK 41 799 -109 1 1527 3607 143 31 0 chr1 123485535 123486110 -73709322 - Lx2 LINE L1 -126 5757 5165 1 1527 6822 69 30 9 chr1 123486103 123486463 -73708969 - L1VL4 LINE L1 -1705 1854 1492 1 1527 192 77 0 0 chr1 123486463 123486489 -73708943 + (TTGTG)n Simple_repeat Simple_repeat 4 29 0 1 1527 6822 84 32 12 chr1 123486489 123487208 -73708224 - L1VL4 LINE L1 -2068 1491 768 1 1527 2135 36 4 0 chr1 123487208 123487460 -73707972 - L1Md_T LINE L1 0 6582 6330 1 1527 3672 185 39 34 chr1 123487460 123488012 -73707420 - L1VL4 LINE L1 -5535 767 197 1 1527 215 259 0 49 chr1 123488044 123488105 -73707327 - ID4 SINE ID -2 81 24 1 1527 511 257 60 7 chr1 123488201 123488350 -73707082 - MLT1A0 LTR MaLR -4 361 205 1 1527 219 267 212 17 chr1 123488387 123488505 -73706927 - ID_B1 SINE B4 -1 223 83 1 1527 519 254 117 12 chr1 123488679 123488850 -73706582 - RMER21B LTR ERV1 -332 510 322 1 1527 328 206 0 31 chr1 123488874 123488939 -73706493 - ID SINE ID -141 83 21 1 1527 267 341 56 86 chr1 123488938 123489092 -73706340 - MLT1A0 LTR MaLR -138 236 90 1 1527 314 203 90 51 chr1 123488939 123488951 -73706481 - ID4 SINE ID -1 81 2 1 1527 1175 63 7 0 chr1 123489092 123489235 -73706197 - B1_Mus2 SINE Alu 0 147 4 1 1527 289 198 65 65 chr1 123489235 123489314 -73706118 - MLT1A0 LTR MaLR -285 89 10 1 1527 844 261 54 123 chr1 123489317 123489724 -73705708 - MTE2a LTR MaLR 0 379 1 1 1527 1137 263 59 12 chr1 123490275 123490438 -73704994 - MTE2b LTR MaLR -37 342 169 1 1527 899 185 267 11 chr1 123490438 123490700 -73704732 + ORR1A4 LTR MaLR 1 329 0 1 1527 1137 263 59 12 chr1 123490700 123490859 -73704573 - MTE2b LTR MaLR -211 168 7 1 1527 288 0 0 0 chr1 123491077 123491109 -73704323 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1527 224 250 18 0 chr1 123491138 123491194 -73704238 + GA-rich Low_complexity Low_complexity 2 58 0 1 1527 269 337 0 11 chr1 123492328 123492415 -73703017 + CT-rich Low_complexity Low_complexity 1 86 0 1 1527 520 248 22 44 chr1 123492419 123492554 -73702878 - ID_B1 SINE B4 0 224 93 1 1527 379 286 128 44 chr1 123492567 123492915 -73702517 - L1MA5 LINE L1 -398 5902 5520 1 1527 420 271 137 15 chr1 123493133 123493264 -73702168 - ID_B1 SINE B4 -77 147 1 1 1527 355 196 154 43 chr1 123494316 123494433 -73700999 - HAL1-3A_ME LINE L1 -753 2105 1976 1 1527 396 265 0 0 chr1 123494454 123494590 -73700842 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 1527 304 344 0 0 chr1 123494598 123494694 -73700738 - RMER15 LTR ERVL -109 466 371 1 1527 525 305 62 5 chr1 123495786 123496010 -73699422 + Tigger5 DNA MER2_type 2142 2378 -28 1 1527 1529 214 25 13 chr1 123496089 123496406 -73699026 + MTE2b LTR MaLR 59 379 0 1 1527 281 200 66 13 chr1 123496428 123496504 -73698928 + CT-rich Low_complexity Low_complexity 3 82 0 1 1527 289 280 91 27 chr1 123496512 123496622 -73698810 - MLT2B4 LTR ERVL -69 487 371 1 1527 286 311 28 64 chr1 123496616 123496757 -73698675 - MLT2B4 LTR ERVL -267 253 118 1 1527 582 207 0 16 chr1 123497627 123497750 -73697682 + B4 SINE B4 3 123 -169 1 1527 1508 217 52 9 chr1 123497756 123498081 -73697351 - Lx9 LINE L1 -995 6649 6311 1 1527 217 347 14 0 chr1 123498128 123498200 -73697232 - B4 SINE B4 -212 80 8 1 1527 350 272 54 81 chr1 123498798 123498946 -73696486 - B4A SINE B4 -147 145 2 1 1527 696 191 158 5 chr1 123499810 123500000 -73695432 - RMER15 LTR ERVL -3 572 354 1 1527 1052 218 147 24 chr1 123500000 123500292 -73695140 - RMER15 LTR ERVL -222 353 26 1 1527 294 226 16 0 chr1 123500311 123500373 -73695059 - RMER15 LTR ERVL -512 63 1 1 1527 1275 216 176 137 chr1 123500583 123501093 -73694339 - MT2A LTR ERVL 0 533 4 2 1527 712 233 36 62 chr1 123501163 123501387 -73694045 - MER2 DNA MER2_type -28 317 100 3 1527 267 337 108 40 chr1 123501656 123501832 -73693600 - MLT1G1 LTR MaLR -19 560 373 4 1527 281 264 69 69 chr1 123501843 123501973 -73693459 - MLT1G1 LTR MaLR -266 313 184 4 1527 361 166 78 3 chr1 123502666 123502769 -73692663 - B4 SINE B4 -13 279 78 5 1527 446 278 6 90 chr1 123502908 123503074 -73692358 - B4A SINE B4 -137 155 4 6 1527 1144 250 35 7 chr1 123503155 123503437 -73691995 + B4 SINE B4 3 292 0 7 1527 1065 217 72 119 chr1 123503453 123503814 -73691618 + MTE2b LTR MaLR 16 359 -20 8 1527 516 16 0 0 chr1 123504025 123504086 -73691346 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1527 414 290 44 31 chr1 123504387 123504547 -73690885 + B4A SINE B4 2 163 -129 1 1527 199 173 39 0 chr1 123505393 123505445 -73689987 + CT-rich Low_complexity Low_complexity 1 54 0 1 1527 467 222 0 7 chr1 123505470 123505624 -73689808 + CT-rich Low_complexity Low_complexity 3 155 0 1 1527 284 286 0 13 chr1 123505665 123505743 -73689689 - ID4_ SINE ID 0 83 7 1 1527 540 0 0 0 chr1 123506121 123506181 -73689251 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1527 1190 155 62 14 chr1 123506209 123506418 -73689014 - Lx4B LINE L1 -78 6980 6762 1 1527 362 146 64 0 chr1 123506573 123506683 -73688749 + GA-rich Low_complexity Low_complexity 5 121 0 1 1527 1003 119 11 0 chr1 123506685 123506861 -73688571 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 1527 437 301 206 63 chr1 123507241 123507290 -73688142 - B4A SINE B4 -4 288 242 1 1527 938 72 0 0 chr1 123507290 123507415 -73688017 + L1_Mus1 LINE L1 6441 6565 -2 1 1527 437 301 206 63 chr1 123507415 123507617 -73687815 - B4A SINE B4 -51 241 1 1 1527 801 311 51 18 chr1 123508616 123508891 -73686541 - B4 SINE B4 0 292 9 1 1527 212 161 36 0 chr1 123509372 123509428 -73686004 + (TCTCTG)n Simple_repeat Simple_repeat 6 63 0 2 1527 327 25 0 0 chr1 123509476 123509516 -73685916 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1527 617 262 90 0 chr1 123509516 123509661 -73685771 - B3A SINE B2 -32 166 9 2 1527 768 242 37 0 chr1 123509663 123509853 -73685579 - B4 SINE B4 -70 222 26 2 1527 201 300 10 39 chr1 123510464 123510568 -73684864 - L2 LINE L2 -383 3036 2936 2 1527 359 252 94 0 chr1 123510612 123510739 -73684693 + B4A SINE B4 108 246 -46 2 1527 395 83 0 16 chr1 123510745 123510806 -73684626 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1527 184 122 24 24 chr1 123511286 123511328 -73684104 + CT-rich Low_complexity Low_complexity 2 43 0 2 1527 26 0 0 0 chr1 123511447 123511473 -73683959 + AT_rich Low_complexity Low_complexity 1 26 0 2 1527 4971 41 21 7 chr1 123512204 123512812 -73682620 + L1Md_F3 LINE L1 5954 6570 -14 2 1527 305 113 0 40 chr1 123513056 123513130 -73682302 + T-rich Low_complexity Low_complexity 1 71 0 3 1527 25 65 0 0 chr1 123513285 123513331 -73682101 + AT_rich Low_complexity Low_complexity 1 46 0 3 1527 815 263 0 33 chr1 123513352 123513564 -73681868 - B3 SINE B2 -11 205 1 3 1527 312 211 56 28 chr1 123513573 123513680 -73681752 - B3A SINE B2 -1 197 88 3 1527 2191 164 24 26 chr1 123514014 123514434 -73680998 - MTD LTR MaLR 0 419 1 3 1527 241 324 50 39 chr1 123514929 123515109 -73680323 - Lx9 LINE L1 -1637 6007 5826 3 1527 349 302 68 81 chr1 123515108 123515429 -73680003 + Lx8 LINE L1 7155 7471 -2 3 1527 225 0 0 0 chr1 123515501 123515526 -73679906 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1527 315 0 0 0 chr1 123515526 123515560 -73679872 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1527 586 186 59 0 chr1 123515570 123515688 -73679744 - RSINE1 SINE B4 -38 127 3 3 1527 387 0 0 0 chr1 123517488 123517531 -73677901 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1527 22 0 0 0 chr1 123517992 123518014 -73677418 + AT_rich Low_complexity Low_complexity 1 22 0 4 1527 348 127 0 0 chr1 123518014 123518069 -73677363 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1527 733 210 7 0 chr1 123518071 123518209 -73677223 - B3A SINE B2 -47 151 13 4 1527 498 228 9 9 chr1 123518340 123518455 -73676977 - RMER5 LTR ERV1 0 534 420 4 1527 4512 14 0 0 chr1 123518455 123518948 -73676484 + MT2_Mm LTR ERVL 1 493 0 4 1527 40051 28 5 7 chr1 123518962 123525150 -73670282 - L1Md_T LINE L1 0 6582 416 4 1527 857 279 78 28 chr1 123525152 123525509 -73669923 - RMER5 LTR ERV1 -107 427 53 4 1527 384 205 0 0 chr1 123525615 123525693 -73669739 + Tigger5 DNA MER2_type 2292 2369 -37 4 1527 228 159 0 43 chr1 123525820 123525866 -73669566 + MTE2b LTR MaLR 149 192 -187 4 1527 1007 140 0 0 chr1 123525860 123526024 -73669408 + MTC LTR MaLR 140 303 -118 4 1527 1309 253 22 107 chr1 123526029 123526441 -73668991 + MTEa LTR MaLR 3 379 0 5 1527 768 95 0 17 chr1 123526677 123526795 -73668637 + B2_Mm2 SINE B2 49 164 -31 5 1527 462 314 132 14 chr1 123526951 123527164 -73668268 - RMER15 LTR ERVL -42 533 296 5 1527 292 234 12 47 chr1 123527164 123527249 -73668183 - RMER15 LTR ERVL -493 82 1 5 1527 908 301 4 4 chr1 123527626 123527866 -73667566 - B4A SINE B4 -52 240 1 5 1527 419 237 263 12 chr1 123528333 123528504 -73666928 - ID_B1 SINE B4 -9 215 2 5 1527 992 240 102 0 chr1 123529225 123529500 -73665932 + MTEa LTR MaLR 70 372 -7 5 1527 346 312 44 22 chr1 123529617 123529797 -73665635 - MIR SINE MIR -14 248 65 5 1527 1532 158 86 0 chr1 123529998 123530290 -73665142 + ORR1A2 LTR MaLR 1 317 -10 5 1527 25 31 0 0 chr1 123530292 123530324 -73665108 + AT_rich Low_complexity Low_complexity 1 32 0 5 1527 223 330 23 0 chr1 123530495 123530583 -73664849 + MIRb SINE MIR 133 222 -46 5 1527 601 276 22 71 chr1 123530849 123531032 -73664400 + B4 SINE B4 50 223 -69 6 1527 213 149 21 0 chr1 123531033 123531080 -73664352 + A-rich Low_complexity Low_complexity 4 51 0 6 1527 1436 247 29 24 chr1 123531169 123531460 -73663972 + MTD LTR MaLR 23 311 -108 6 1527 4209 54 77 0 chr1 123531460 123531980 -73663452 - LTRIS2 LTR ERV1 0 564 5 6 1527 1436 247 29 24 chr1 123531980 123532069 -73663363 + MTD LTR MaLR 312 405 -14 6 1527 4347 74 7 7 chr1 123532476 123533036 -73662396 + L1_Mus4 LINE L1 5915 6474 -162 6 1527 1306 247 40 40 chr1 123533016 123533420 -73662012 + Lx8 LINE L1 7066 7469 -4 6 1527 23 33 0 0 chr1 123533420 123533450 -73661982 + AT_rich Low_complexity Low_complexity 1 30 0 6 1527 984 210 49 0 chr1 123533836 123534041 -73661391 - B3 SINE B2 -1 215 1 6 1527 790 200 27 0 chr1 123534050 123534200 -73661232 - B3 SINE B2 -6 210 57 6 1527 725 160 8 8 chr1 123534440 123534566 -73660866 + MTD LTR MaLR 25 150 -269 6 1527 882 116 19 6 chr1 123534738 123534894 -73660538 - L1_Mus3 LINE L1 -7 6631 6474 7 1527 315 241 102 11 chr1 123534907 123534995 -73660437 - Lx8 LINE L1 -388 7085 6990 7 1527 616 125 0 0 chr1 123535036 123535124 -73660308 - Lx3_Mus LINE L1 -721 6288 6201 7 1527 5027 87 52 13 chr1 123535124 123535833 -73659599 + Lx3_Mus LINE L1 6273 7009 0 7 1527 513 0 0 0 chr1 123536778 123536835 -73658597 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1527 1111 198 17 13 chr1 123537034 123537264 -73658168 + RLTR19-int LTR ERVK 1105 1335 -4187 7 1527 1122 268 61 47 chr1 123538629 123539309 -73656123 + RLTR19-int LTR ERVK 1870 2862 -3275 7 1527 328 254 92 62 chr1 123539410 123539540 -73655892 + RLTR19-int LTR ERVK 2904 3037 -3100 7 1527 272 241 0 0 chr1 123539703 123539761 -73655671 + RLTR19-int LTR ERVK 3189 3246 -2891 7 1527 567 43 0 0 chr1 123539864 123539934 -73655498 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 7 1527 510 17 0 0 chr1 123539934 123539993 -73655439 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1527 1377 135 48 173 chr1 123539993 123540414 -73655018 - RLTR23 LTR ERV1 -53 377 10 7 1527 611 332 28 20 chr1 123540507 123540896 -73654536 - RLTR6-int LTR ERV1 -102 7676 7036 7 1527 288 322 19 52 chr1 123542868 123543022 -73652410 - RLTR14-int LTR ERV1 -1440 3877 3729 7 1527 411 157 69 124 chr1 123543078 123543223 -73652209 + RLTR19-int LTR ERVK 3521 3657 -2480 7 1527 1436 254 45 94 chr1 123543223 123543830 -73651602 + RMER19C LTR ERVK 1 577 -34 8 1527 2027 97 51 3 chr1 123543832 123544144 -73651288 - ORR1A2 LTR MaLR 0 327 1 8 1527 1548 237 84 118 chr1 123544185 123545033 -73650399 + RLTR19-int LTR ERVK 3654 4472 -1665 7 1527 263 193 86 17 chr1 123545195 123545253 -73650179 - RLTR19-int LTR ERVK -1903 4234 4173 8 1527 405 239 35 17 chr1 123545253 123545368 -73650064 + Lx5 LINE L1 6934 7050 0 8 1527 864 269 30 30 chr1 123545374 123545608 -73649824 - B4 SINE B4 -55 237 4 8 1527 328 286 119 8 chr1 123545658 123545792 -73649640 - MER58B DNA MER1_type -1 340 192 8 1527 479 248 29 22 chr1 123545966 123546135 -73649297 + Lx5 LINE L1 5928 6092 -1368 8 1527 533 297 118 63 chr1 123548523 123548810 -73646622 + RMER15 LTR ERVL 273 575 0 8 1527 511 194 84 53 chr1 123548954 123549025 -73646407 + B1_Mur2 SINE Alu 14 81 -68 8 1527 3804 157 115 80 chr1 123549025 123549897 -73645535 + RMER19B LTR ERVK 1 902 0 8 1527 511 194 84 53 chr1 123549897 123549956 -73645476 + B1_Mur2 SINE Alu 82 148 -1 8 1527 814 274 53 16 chr1 123550094 123550339 -73645093 - B4A SINE B4 -6 286 33 9 1527 455 337 26 16 chr1 123550342 123550532 -73644900 - Ricksha_c DNA MuDR -415 1633 1442 9 1527 219 336 64 0 chr1 123550755 123550865 -73644567 - MIRb SINE MIR -26 242 126 9 1527 23 0 0 0 chr1 123550987 123551010 -73644422 + AT_rich Low_complexity Low_complexity 1 23 0 9 1527 295 169 0 17 chr1 123552012 123552072 -73643360 + MTEa LTR MaLR 187 245 -134 9 1527 356 147 0 13 chr1 123552887 123552963 -73642469 + (TG)n Simple_repeat Simple_repeat 2 76 0 9 1527 608 211 84 26 chr1 123553039 123553229 -73642203 + MER34 LTR ERV1 1 201 -341 9 1527 490 324 16 54 chr1 123553229 123553415 -73642017 + B3A SINE B2 15 193 -5 9 1527 291 244 86 81 chr1 123553418 123553458 -73641974 - Lx7 LINE L1 -1 7695 7655 9 1527 1314 0 0 0 chr1 123553458 123553604 -73641828 + (TTC)n Simple_repeat Simple_repeat 3 148 0 9 1527 1163 58 0 0 chr1 123553605 123553744 -73641688 - B1_Mus1 SINE Alu -8 140 2 1 1527 990 239 27 57 chr1 123553744 123554168 -73641264 - Lx7 LINE L1 -42 7654 7193 9 1527 2464 200 38 72 chr1 123554173 123554584 -73640848 - RMER19C LTR ERVK 0 611 206 1 1527 3804 53 0 8 chr1 123554584 123555060 -73640372 + L1Md_F2 LINE L1 6110 6581 -1 1 1527 2464 200 38 72 chr1 123555060 123555274 -73640158 - RMER19C LTR ERVK -406 205 9 1 1527 2493 205 12 63 chr1 123555277 123555458 -73639974 - Lx7 LINE L1 -514 7182 7008 9 1527 2163 191 37 0 chr1 123555458 123555860 -73639572 + MTC LTR MaLR 5 421 0 1 1527 2493 205 12 63 chr1 123555860 123556065 -73639367 - Lx7 LINE L1 -689 7007 6800 9 1527 2715 114 20 10 chr1 123556065 123556455 -73638977 + ORR1B1 LTR MaLR 1 394 0 1 1527 2259 194 12 70 chr1 123556455 123556625 -73638807 - Lx7 LINE L1 -897 6799 6653 9 1527 971 295 20 37 chr1 123556631 123556927 -73638505 + B4 SINE B4 2 292 0 1 1527 396 0 0 0 chr1 123556946 123556990 -73638442 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1527 260 70 23 0 chr1 123556991 123557034 -73638398 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1527 256 241 35 35 chr1 123557209 123557295 -73638137 + MTE2a LTR MaLR 13 98 -321 1 1527 1028 185 5 30 chr1 123557297 123557434 -73637998 - ORR1C1 LTR MaLR 0 378 246 1 1527 1966 138 41 29 chr1 123557434 123557776 -73637656 + ORR1A1 LTR MaLR 1 346 0 1 1527 1028 146 804 14 chr1 123557776 123557912 -73637520 - ORR1C1 LTR MaLR -133 245 1 1 1527 851 234 108 11 chr1 123557931 123558191 -73637241 + MTE2a LTR MaLR 95 379 0 1 1527 416 296 15 7 chr1 123558221 123558357 -73637075 + MER34 LTR ERV1 406 542 0 1 1527 345 319 86 46 chr1 123558394 123558568 -73636864 + MER20 DNA MER1_type 3 183 -36 1 1527 533 205 261 0 chr1 123558637 123558798 -73636634 - RMER15 LTR ERVL -21 554 352 1 1527 1001 226 226 16 chr1 123559910 123560096 -73635336 - MTE2b LTR MaLR -4 375 162 1 1527 510 17 0 0 chr1 123560096 123560155 -73635277 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1527 1001 226 226 16 chr1 123560155 123560278 -73635154 - MTE2b LTR MaLR -218 161 1 1 1527 21 71 0 0 chr1 123560283 123560325 -73635107 + AT_rich Low_complexity Low_complexity 1 42 0 1 1527 37814 39 1 22 chr1 123560426 123565639 -73629793 - L1Md_T LINE L1 0 6585 1500 1 1527 2568 47 17 70 chr1 123565639 123565984 -73629448 - IAPLTR2b LTR ERVK 0 327 1 1 1527 37814 61 0 19 chr1 123565984 123567356 -73628076 - L1Md_T LINE L1 -4387 1499 50 1 1527 306 0 0 0 chr1 123567425 123567459 -73627973 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1527 198 0 0 0 chr1 123567459 123567480 -73627952 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1527 537 16 0 0 chr1 123567480 123567541 -73627891 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1527 355 361 54 11 chr1 123567546 123567731 -73627701 + MLT1A0 LTR MaLR 171 363 -2 1 1527 286 226 106 12 chr1 123567974 123568059 -73627373 - B4A SINE B4 -6 286 194 1 1527 243 275 0 48 chr1 123568146 123568230 -73627202 - MLT1D LTR MaLR -421 84 5 1 1527 875 32 23 16 chr1 123568308 123568436 -73626996 + (TTC)n Simple_repeat Simple_repeat 1 129 0 1 1527 229 141 27 40 chr1 123568463 123568537 -73626895 + CT-rich Low_complexity Low_complexity 2 74 0 1 1527 997 137 87 10 chr1 123568717 123568924 -73626508 - URR1B DNA MER1_type -1 224 2 1 1527 290 242 173 24 chr1 123568956 123569083 -73626349 + MTD LTR MaLR 101 246 -175 1 1527 350 195 67 22 chr1 123569163 123569252 -73626180 + MTD LTR MaLR 286 378 -41 1 1527 353 61 197 0 chr1 123569327 123569393 -73626039 - L1Md_T LINE L1 -2930 2953 2875 1 1527 8788 20 0 1 chr1 123569370 123571044 -73624388 - L1Md_T LINE L1 0 6582 4911 1 1527 622 13 0 0 chr1 123571044 123571119 -73624313 - L1Md_T LINE L1 -2962 2921 2847 1 1527 2544 21 0 0 chr1 123571115 123571400 -73624032 + L1Md_A LINE L1 5302 5586 -297 1 1527 8422 36 2 7 chr1 123571401 123572400 -73623032 + L1Md_A LINE L1 5588 6581 -1 1 1527 190 343 57 0 chr1 123572419 123572489 -73622943 + MIRc SINE MIR 82 155 -113 1 1527 292 225 28 0 chr1 123572640 123572711 -73622721 - ORR1E LTR MaLR -286 73 1 1 1527 822 0 51 0 chr1 123572750 123572868 -73622564 + (TCTA)n Simple_repeat Simple_repeat 1 124 0 1 1527 597 64 0 0 chr1 123572869 123572947 -73622485 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1527 983 261 99 107 chr1 123573106 123573548 -73621884 + MTD LTR MaLR 1 404 -15 1 1527 237 283 23 9 chr1 123573558 123573885 -73621547 + (TG)n Simple_repeat Simple_repeat 1 331 0 1 1527 244 303 22 11 chr1 123575165 123575255 -73620177 - L2 LINE L2 -974 2445 2355 1 1527 369 0 0 0 chr1 123575443 123575484 -73619948 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1527 371 340 6 62 chr1 123575557 123575717 -73619715 - B4 SINE B4 -123 169 19 1 1527 804 256 142 32 chr1 123575744 123576079 -73619353 - MTD LTR MaLR -17 402 46 1 1527 4073 224 91 10 chr1 123577129 123578016 -73617416 - RMER1A Other Other 0 1030 72 1 1527 316 153 58 12 chr1 123578044 123578130 -73617302 - Lx4B LINE L1 -4 7054 6965 1 1527 15404 168 115 34 chr1 123578127 123581636 -73613796 - Lx4B LINE L1 -4 7054 3460 1 1527 3186 63 8 2 chr1 123581636 123582034 -73613398 + MTB LTR MaLR 1 400 0 1 1527 479 103 39 0 chr1 123582039 123582117 -73613315 + MT-int LTR MaLR 17 97 -1001 1 1527 15404 183 178 34 chr1 123582117 123584226 -73611206 - Lx4B LINE L1 -2421 3454 730 1 1527 372 159 0 55 chr1 123584217 123584290 -73611142 - L1_Mur2 LINE L1 -2886 2991 2923 1 1527 2140 111 3 21 chr1 123584292 123584580 -73610852 + ORR1A2 LTR MaLR 3 290 -37 1 1527 3277 38 13 0 chr1 123584580 123584971 -73610461 + MTA_Mm LTR MaLR 1 396 0 1 1527 2140 111 3 21 chr1 123584971 123585013 -73610419 + ORR1A2 LTR MaLR 291 327 0 1 1527 8310 160 14 78 chr1 123585013 123587044 -73608388 - L1_Mur2 LINE L1 -2950 2927 1037 1 1527 507 206 0 73 chr1 123587051 123587161 -73608271 - B3 SINE B2 -111 105 4 1 1527 360 207 54 42 chr1 123587161 123587312 -73608120 - L1_Mur2 LINE L1 -6042 1044 893 1 1527 244 269 25 25 chr1 123587883 123587963 -73607469 + GA-rich Low_complexity Low_complexity 4 83 0 1 1527 198 103 0 0 chr1 123588394 123588423 -73607009 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1 1527 316 236 75 11 chr1 123588475 123588569 -73606863 - MER70B LTR ERVL -461 117 18 1 1527 426 256 62 114 chr1 123588987 123589062 -73606370 + B4 SINE B4 3 72 -220 1 1527 2652 93 28 5 chr1 123589062 123589453 -73605979 - MTB LTR MaLR 0 400 1 1 1527 426 256 62 114 chr1 123589453 123589553 -73605879 + B4 SINE B4 73 169 -123 1 1527 508 137 24 36 chr1 123589582 123589749 -73605683 + (CAGAGA)n Simple_repeat Simple_repeat 2 166 0 1 1527 282 73 0 0 chr1 123590559 123590600 -73604832 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 1 1527 483 48 0 0 chr1 123590655 123590717 -73604715 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1527 437 246 110 88 chr1 123590736 123590963 -73604469 - B4A SINE B4 -59 233 2 1 1527 723 260 85 5 chr1 123590963 123591177 -73604255 - B4A SINE B4 -59 233 2 1 1527 1025 266 46 35 chr1 123592000 123592284 -73603148 - B4 SINE B4 -4 288 2 1 1527 282 371 62 82 chr1 123592497 123592733 -73602699 + MLT1F1 LTR MaLR 14 244 -325 1 1527 1785 223 23 103 chr1 123592733 123593293 -73602139 + RMER19C LTR ERVK 1 609 -2 1 1527 479 210 79 85 chr1 123593334 123593548 -73601884 + MLT1F1 LTR MaLR 310 657 -23 1 1527 505 317 13 92 chr1 123593880 123594196 -73601236 - B4A SINE B4 0 292 2 1 1527 567 255 99 51 chr1 123594231 123594436 -73600996 - B3A SINE B2 0 195 1 1 1527 478 368 45 59 chr1 123594813 123595188 -73600244 - MER74A LTR ERVL -56 502 133 1 1527 647 293 93 21 chr1 123595199 123595436 -73599996 + B4 SINE B4 1 254 -38 1 1527 873 96 0 0 chr1 123595442 123595567 -73599865 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 1 1527 680 230 7 0 chr1 123595567 123595702 -73599730 - B1_Mur2 SINE Alu -12 137 2 1 1527 495 281 104 0 chr1 123595914 123596078 -73599354 + MTE-int LTR MaLR 1157 1337 -243 1 1527 516 244 94 0 chr1 123596217 123596344 -73599088 - ID_B1 SINE B4 0 224 86 1 1527 316 233 12 60 chr1 123596372 123596503 -73598929 - ID4 SINE ID -23 129 13 1 1527 1001 118 181 10 chr1 123596522 123596727 -73598705 - RLTR24 LTR ERV1 -122 407 168 1 1527 620 184 0 31 chr1 123596741 123596870 -73598562 - RLTR24 LTR ERV1 -266 263 139 1 1527 2378 230 88 82 chr1 123596871 123597659 -73597773 + RMER13A LTR ERVK 2 793 -67 1 1527 959 105 0 7 chr1 123597760 123597904 -73597528 - RLTR24 LTR ERV1 -384 145 3 1 1527 831 273 93 11 chr1 123598175 123598445 -73596987 - B4A SINE B4 0 292 1 1 1527 225 0 0 0 chr1 123599208 123599233 -73596199 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1527 1021 90 7 7 chr1 123599234 123599379 -73596053 - B1_Mus1 SINE Alu -2 146 2 1 1527 673 301 42 29 chr1 123599652 123599892 -73595540 + B4 SINE B4 40 282 -10 1 1527 307 178 55 0 chr1 123599931 123600004 -73595428 + HAL1-3A_ME LINE L1 1977 2053 -805 1 1527 195 42 0 0 chr1 123600340 123600364 -73595068 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1527 752 301 70 22 chr1 123600644 123600691 -73594741 + MER2 DNA MER2_type 10 58 -287 1 190 2817 41 3 55 chr1 123600691 123601056 -73594376 - ORR1A0 LTR MaLR 0 346 1 1 1528 752 301 70 22 chr1 123601056 123601321 -73594111 + MER2 DNA MER2_type 59 337 -8 1 1528 223 324 13 53 chr1 123601604 123601679 -73593753 + ID2 SINE ID 11 82 -1 1 1528 231 273 45 0 chr1 123601688 123601754 -73593678 + PB1D7 SINE Alu 13 81 -39 1 1528 613 265 11 50 chr1 123601862 123602041 -73593391 - B3A SINE B2 0 198 27 1 1528 1369 167 70 95 chr1 123602074 123602432 -73593000 - Lx5 LINE L1 0 7050 6702 1 1528 296 236 69 0 chr1 123603827 123603899 -73591533 + ID4_ SINE ID 2 78 -5 1 1528 488 272 36 78 chr1 123604365 123604584 -73590848 + B4A SINE B4 43 252 -40 1 1528 390 101 0 0 chr1 123604600 123604669 -73590763 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1528 561 15 0 0 chr1 123605417 123605483 -73589949 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 1 1528 1088 58 0 61 chr1 123605485 123605633 -73589799 - B1_Mm SINE Alu -6 141 3 1 1528 23 33 0 0 chr1 123606452 123606482 -73588950 + AT_rich Low_complexity Low_complexity 1 30 0 1 1528 686 104 0 0 chr1 123606796 123606892 -73588540 + B1_Mus2 SINE Alu 46 141 -6 1 1528 3235 53 2 8 chr1 123606930 123607328 -73588104 - MTA_Mm LTR MaLR 0 396 1 1 1528 2332 104 3 58 chr1 123607490 123607836 -73587596 - ORR1A2 LTR MaLR 0 327 1 1 1528 200 222 56 0 chr1 123607930 123607984 -73587448 + (TATG)n Simple_repeat Simple_repeat 3 59 0 1 1528 210 231 0 0 chr1 123607940 123607979 -73587453 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1528 23 0 0 0 chr1 123608055 123608078 -73587354 + AT_rich Low_complexity Low_complexity 1 23 0 1 1528 2393 139 41 26 chr1 123608085 123608476 -73586956 - Lx4A LINE L1 -1 7057 6661 2 1528 426 264 9 19 chr1 123608481 123608589 -73586843 - ID_B1 SINE B4 -8 216 110 2 1528 253 292 54 27 chr1 123608532 123608606 -73586826 - PB1D7 SINE Alu -31 89 14 2 1528 4723 282 91 30 chr1 123609036 123610786 -73584646 - Lx8 LINE L1 -2 7471 5562 2 1528 1945 164 48 19 chr1 123610786 123611159 -73584273 + ORR1C2 LTR MaLR 1 384 0 2 1528 1821 263 99 72 chr1 123611159 123611818 -73583614 - Lx8 LINE L1 -286 5561 4883 2 1528 620 296 35 6 chr1 123612056 123612229 -73583203 + ID_B1 SINE B4 1 178 -46 2 1528 333 93 0 0 chr1 123612237 123612291 -73583141 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1528 624 14 0 0 chr1 123612291 123612364 -73583068 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1528 261 202 50 0 chr1 123612507 123612590 -73582842 - L1MD2 LINE L1 0 6359 6287 2 1528 248 295 101 0 chr1 123612640 123612779 -73582653 - L1MDa LINE L1 -5173 1460 1308 2 1528 871 303 120 33 chr1 123613348 123613864 -73581568 - L1MDa LINE L1 -6001 632 72 2 1528 318 315 85 58 chr1 123614018 123614207 -73581225 - ORR1E LTR MaLR -147 212 19 2 1528 25 0 0 0 chr1 123614207 123614232 -73581200 + AT_rich Low_complexity Low_complexity 1 25 0 2 1528 907 250 0 0 chr1 123614686 123614858 -73580574 - B3A SINE B2 -25 173 2 2 1528 283 222 37 217 chr1 123615159 123615320 -73580112 + RMER15 LTR ERVL 1 132 -443 2 1528 962 264 62 15 chr1 123615349 123615622 -73579810 + RMER15 LTR ERVL 279 564 -11 2 1528 1561 233 89 6 chr1 123615903 123616253 -73579179 - MTE2b LTR MaLR 0 379 1 2 1528 1196 273 9 133 chr1 123616539 123616966 -73578466 + MTE2a LTR MaLR 1 374 -5 2 1528 694 317 28 24 chr1 123617277 123617490 -73577942 - B4 SINE B4 0 292 79 2 1528 192 315 53 53 chr1 123617673 123617787 -73577645 - L2c LINE L2 -202 3185 3072 2 1528 180 158 0 0 chr1 123617935 123617973 -73577459 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1528 755 228 72 157 chr1 123618000 123618234 -73577198 - B4A SINE B4 0 292 70 2 1528 371 21 0 20 chr1 123618234 123618283 -73577149 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 2 1528 755 228 72 157 chr1 123618283 123618366 -73577066 - B4A SINE B4 -223 69 2 2 1528 189 196 232 0 chr1 123618848 123618904 -73576528 - L3 LINE CR1 -3520 969 901 2 1528 704 292 131 11 chr1 123619598 123619858 -73575574 + B4A SINE B4 2 292 0 2 1528 602 303 88 34 chr1 123620146 123620409 -73575023 + B4A SINE B4 2 278 -14 2 1528 216 235 0 0 chr1 123620495 123620563 -73574869 + CT-rich Low_complexity Low_complexity 1 68 0 2 1528 860 231 89 25 chr1 123620564 123620833 -73574599 + MTD LTR MaLR 18 283 -138 2 1528 31604 89 18 18 chr1 123620838 123626135 -73569297 + L1Md_F2 LINE L1 294 5586 -297 2 1528 7870 76 6 9 chr1 123626135 123627120 -73568312 + L1Md_F2 LINE L1 5587 6568 -14 2 1528 4546 225 53 73 chr1 123627136 123628474 -73566958 + Lx9 LINE L1 6333 7643 -1 2 1528 917 191 119 15 chr1 123628479 123628681 -73566751 + MTD LTR MaLR 197 419 0 2 1528 266 0 29 0 chr1 123629176 123629210 -73566222 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1528 2568 151 10 8 chr1 123629745 123630138 -73565294 + ORR1B1 LTR MaLR 1 394 0 2 1528 1628 242 61 17 chr1 123630184 123630546 -73564886 + MTEa LTR MaLR 1 378 -1 2 1528 258 224 0 20 chr1 123631153 123631203 -73564229 + B4A SINE B4 2 50 -242 2 1528 961 108 6 13 chr1 123632286 123632445 -73562987 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 2 1528 1461 199 56 69 chr1 123632453 123632819 -73562613 + ORR1D1 LTR MaLR 1 362 -12 2 1528 3032 149 5 130 chr1 123632819 123633421 -73562011 + RLTR11A2 LTR ERVK 1 527 0 2 1528 275 224 22 66 chr1 123633435 123633526 -73561906 + CT-rich Low_complexity Low_complexity 2 88 0 2 1528 421 322 81 9 chr1 123633790 123634000 -73561432 + MER58B DNA MER1_type 116 340 -1 2 1528 235 295 0 0 chr1 123634142 123634203 -73561229 + (TATG)n Simple_repeat Simple_repeat 3 63 0 2 1528 872 272 114 16 chr1 123634203 123634457 -73560975 - B4 SINE B4 -2 290 12 2 1528 36323 46 0 3 chr1 123634460 123639808 -73555624 + L1Md_T LINE L1 162 5589 -297 2 1528 9087 30 0 0 chr1 123639808 123640804 -73554628 + L1Md_T LINE L1 5590 6585 0 2 1528 924 291 67 15 chr1 123641719 123641988 -73553444 - B4 SINE B4 -6 286 4 2 1528 733 280 131 23 chr1 123642497 123642757 -73552675 - B4 SINE B4 -2 290 3 2 1528 245 235 0 0 chr1 123642915 123642966 -73552466 + MTEa LTR MaLR 3 53 -326 2 1528 22330 160 19 92 chr1 123643145 123645263 -73550169 + Lx LINE L1 1089 3198 -2688 2 1528 1584 148 145 25 chr1 123645263 123645622 -73549810 + RLTR9E LTR ERVK 3 404 -5 2 1528 22330 160 19 92 chr1 123645622 123645902 -73549530 + Lx LINE L1 3199 3478 -2408 2 1528 279 0 0 0 chr1 123645902 123645933 -73549499 + (CAA)n Simple_repeat Simple_repeat 3 33 0 2 1528 22330 145 20 70 chr1 123645933 123649149 -73546283 + Lx LINE L1 3479 6654 0 2 1528 622 316 11 21 chr1 123649153 123649344 -73546088 + MT2A LTR ERVL 260 448 -85 2 1528 38 39 0 0 chr1 123649360 123649412 -73546020 + AT_rich Low_complexity Low_complexity 1 52 0 2 1528 1220 131 131 0 chr1 123649700 123649898 -73545534 - URR1A DNA MER1_type -1 225 2 2 1528 194 374 63 16 chr1 123650039 123650191 -73545241 + MIR3 SINE MIR 14 170 -38 2 1528 740 252 101 150 chr1 123650204 123650591 -73544841 - MTE2a LTR MaLR -2 377 10 2 1528 459 0 0 0 chr1 123650732 123650783 -73544649 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1528 312 244 35 11 chr1 123651089 123651176 -73544256 - MIR SINE MIR 0 262 174 2 1528 201 26 25 50 chr1 123651231 123651271 -73544161 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1528 759 282 48 109 chr1 123651512 123651806 -73543626 - B4A SINE B4 -16 276 1 2 1528 460 219 16 24 chr1 123652423 123652549 -73542883 - L1M4 LINE L1 -385 5799 5675 2 1528 760 244 28 6 chr1 123652550 123652731 -73542701 - RMER15 LTR ERVL -2 573 389 2 1528 805 277 127 8 chr1 123652726 123652963 -73542469 - B4A SINE B4 -27 265 1 2 1528 22 0 0 0 chr1 123653743 123653765 -73541667 + AT_rich Low_complexity Low_complexity 1 22 0 2 1528 446 319 15 0 chr1 123653888 123654023 -73541409 - RMER15 LTR ERVL -15 560 424 2 1528 29 47 0 0 chr1 123654028 123654071 -73541361 + AT_rich Low_complexity Low_complexity 1 43 0 2 1528 389 321 90 35 chr1 123654071 123654348 -73541084 - RMER15 LTR ERVL -162 413 1 2 1528 230 384 85 21 chr1 123654372 123654513 -73540919 + L2b LINE L2 3201 3350 -25 2 1528 39 22 0 0 chr1 123655049 123655095 -73540337 + AT_rich Low_complexity Low_complexity 1 46 0 2 1528 747 247 77 10 chr1 123655095 123655291 -73540141 - B3 SINE B2 0 216 8 2 1528 852 248 89 19 chr1 123655444 123655658 -73539774 + B4A SINE B4 3 231 -61 2 1528 303 259 40 111 chr1 123655706 123655832 -73539600 - B1F SINE Alu -32 117 1 2 1528 3222 127 69 8 chr1 123655956 123656450 -73538982 + RLTR28 LTR ERVL 1 524 0 2 1528 619 174 12 23 chr1 123657064 123657235 -73538197 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 2 1528 723 322 10 71 chr1 123657527 123657745 -73537687 - B4A SINE B4 0 292 88 2 1528 467 0 35 0 chr1 123657745 123657803 -73537629 + (TATG)n Simple_repeat Simple_repeat 2 61 0 2 1528 723 322 10 71 chr1 123657803 123657895 -73537537 - B4A SINE B4 -205 87 2 2 1528 14783 25 0 0 chr1 123657942 123660321 -73535111 - L1Md_T LINE L1 0 6582 4204 2 1528 340 256 25 25 chr1 123661084 123661164 -73534268 - PB1 SINE Alu -1 126 47 2 1528 447 177 90 40 chr1 123661139 123661239 -73534193 + B4A SINE B4 184 288 -4 2 1528 438 252 0 80 chr1 123661247 123661359 -73534073 + ID_B1 SINE B4 66 168 -56 2 1528 413 298 29 0 chr1 123661276 123661380 -73534052 + PB1D10 SINE Alu 5 111 -6 2 1528 239 221 77 13 chr1 123661361 123661439 -73533993 + Charlie9 DNA MER1_type 1988 2070 -687 2 1528 1245 271 38 46 chr1 123661809 123662199 -73533233 - MTEa LTR MaLR -17 402 6 2 1528 293 262 0 0 chr1 123662199 123662260 -73533172 - MTE2b LTR MaLR -318 61 1 2 1528 562 298 55 39 chr1 123662516 123662827 -73532605 - L1M5 LINE L1 -587 5586 5271 2 1528 267 248 19 67 chr1 123662933 123663037 -73532395 - Lx8 LINE L1 -6 7467 7369 2 1528 619 273 26 32 chr1 123663042 123663197 -73532235 - B3 SINE B2 -57 159 6 2 1528 269 266 101 0 chr1 123663204 123663283 -73532149 - Lx8 LINE L1 -141 7332 7246 2 1528 684 259 43 37 chr1 123663342 123663506 -73531926 - RSINE1 SINE B4 0 165 1 2 1528 1072 123 263 0 chr1 123663924 123664103 -73531329 - URR1A DNA MER1_type 0 226 1 2 1528 495 0 0 0 chr1 123664213 123664268 -73531164 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1528 519 336 21 56 chr1 123664317 123664550 -73530882 - B4 SINE B4 -67 225 1 2 1528 327 309 30 68 chr1 123664899 123665031 -73530401 - MER20 DNA MER1_type -42 177 51 2 1528 606 164 215 5 chr1 123665137 123665318 -73530114 - RMER1A Other Other -356 674 456 2 1528 1511 168 144 20 chr1 123665302 123665614 -73529818 + RMER1A Other Other 646 996 -34 2 1528 432 0 0 0 chr1 123665614 123665662 -73529770 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1528 1511 168 144 20 chr1 123665662 123665690 -73529742 + RMER1A Other Other 997 1027 -3 2 1528 860 278 69 70 chr1 123665870 123666481 -73528951 - L1MA4 LINE L1 -7 6284 5663 2 1528 1251 249 43 48 chr1 123666499 123666920 -73528512 - MTE2a LTR MaLR -17 402 1 2 1528 464 222 53 31 chr1 123666921 123667084 -73528348 - L1MA4 LINE L1 -662 5650 5484 2 1528 180 152 0 0 chr1 123667173 123667206 -73528226 + T-rich Low_complexity Low_complexity 1 33 0 2 1528 447 68 0 0 chr1 123668038 123668097 -73527335 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1528 513 239 104 42 chr1 123668125 123668317 -73527115 - B4A SINE B4 -39 253 50 2 1528 380 228 9 0 chr1 123668902 123669016 -73526416 + CT-rich Low_complexity Low_complexity 3 117 0 2 1528 331 246 71 18 chr1 123669212 123669324 -73526108 - L1MA9 LINE L1 -10 6302 6185 2 1528 244 338 0 14 chr1 123669619 123669691 -73525741 - ID4_ SINE ID -7 76 6 2 1528 270 193 0 0 chr1 123670124 123670181 -73525251 + (TCG)n Simple_repeat Simple_repeat 2 58 0 2 1528 787 246 92 44 chr1 123670686 123670935 -73524497 + B4 SINE B4 5 267 -25 2 1528 324 48 0 0 chr1 123670935 123670977 -73524455 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1528 787 246 92 44 chr1 123670977 123670999 -73524433 + B4 SINE B4 268 289 -3 2 1528 2575 151 65 39 chr1 123671542 123672053 -73523379 - RLTR28 LTR ERVL 0 524 1 3 1528 487 196 142 21 chr1 123672083 123672224 -73523208 - RMER15 LTR ERVL -382 193 36 3 1528 4032 178 38 12 chr1 123672269 123673035 -73522397 - Lx5 LINE L1 -138 6912 6153 3 1528 273 343 65 86 chr1 123673160 123673348 -73522084 + B4 SINE B4 9 188 -104 3 1528 929 251 14 0 chr1 123673348 123673559 -73521873 + B3 SINE B2 1 214 -2 3 1528 273 343 65 86 chr1 123673559 123673660 -73521772 + B4 SINE B4 189 292 0 3 1528 296 270 0 7 chr1 123673662 123673811 -73521621 + (CA)n Simple_repeat Simple_repeat 1 148 0 3 1528 180 176 0 0 chr1 123673810 123673844 -73521588 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 3 1528 2371 131 52 62 chr1 123673845 123674325 -73521107 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1528 21386 14 2 2 chr1 123674325 123676683 -73518749 - IAPEz-int LTR ERVK 0 6481 4123 3 1528 953 80 24 0 chr1 123676685 123676810 -73518622 - IAPEz-int LTR ERVK -2770 4910 4783 3 1528 1876 111 4 4 chr1 123676805 123677067 -73518365 - IAPEz-int LTR ERVK -5183 2497 2236 3 1528 454 66 0 32 chr1 123677056 123677119 -73518313 - IAPEz-int LTR ERVK -5062 1419 1359 3 1528 5178 60 6 15 chr1 123677119 123677780 -73517652 - IAPEz-int LTR ERVK -5819 662 8 3 1528 2353 129 52 65 chr1 123677780 123678260 -73517172 - IAPLTR2_Mm LTR ERVK 0 475 2 3 1528 459 0 0 0 chr1 123678260 123678311 -73517121 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1528 266 250 10 0 chr1 123678321 123678425 -73517007 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 1528 727 265 132 24 chr1 123678820 123679071 -73516361 + B4A SINE B4 2 279 -13 3 1528 281 0 0 75 chr1 123679548 123679601 -73515831 + (GGA)n Simple_repeat Simple_repeat 1 49 0 3 1528 270 296 112 9 chr1 123680445 123680561 -73514871 - MIRc SINE MIR -126 142 15 3 1528 503 297 21 84 chr1 123680601 123680762 -73514670 - B4A SINE B4 0 292 144 3 1528 647 154 100 0 chr1 123680762 123680892 -73514540 - URR1B DNA MER1_type 0 225 83 3 1528 477 317 0 82 chr1 123680948 123681106 -73514326 - B4A SINE B4 -147 145 1 3 1528 364 338 40 31 chr1 123681479 123681705 -73513727 + L2 LINE L2 2636 2863 -556 3 1528 438 20 0 0 chr1 123681749 123681800 -73513632 + (TCTG)n Simple_repeat Simple_repeat 3 53 0 3 1528 630 282 53 21 chr1 123681823 123682086 -73513346 - ID_B1 SINE B4 0 292 9 3 1528 315 71 0 0 chr1 123682227 123682269 -73513163 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1528 371 309 28 6 chr1 123683306 123683441 -73511991 + ID_B1 SINE B4 6 143 -149 3 1528 247 349 16 95 chr1 123683429 123683619 -73511813 - MER74B LTR ERVL -106 516 342 3 1528 2016 139 17 8 chr1 123683982 123684458 -73510974 - RLTR33 LTR ERVK -160 518 1 3 1528 1049 78 0 7 chr1 123684740 123684882 -73510550 - L1_Mm LINE L1 -2313 3570 3430 3 1528 6827 57 2 5 chr1 123684880 123685727 -73509705 + L1Md_F2 LINE L1 4742 5586 -297 3 1528 8309 25 26 1 chr1 123685728 123686687 -73508745 + L1Md_F2 LINE L1 5588 6570 -12 3 1528 880 279 72 75 chr1 123686824 123687355 -73508077 + MT2A LTR ERVL 3 531 -2 3 1528 378 0 0 0 chr1 123687366 123687408 -73508024 + (CTA)n Simple_repeat Simple_repeat 1 42 0 3 1528 468 0 0 0 chr1 123687409 123687461 -73507971 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1528 928 224 251 57 chr1 123687654 123688005 -73507427 - RLTR33 LTR ERVK -85 593 175 3 1528 723 236 117 55 chr1 123688102 123688376 -73507056 + B4 SINE B4 2 292 0 3 1528 1143 122 0 26 chr1 123688385 123688822 -73506610 + (CA)n Simple_repeat Simple_repeat 1 425 0 3 1528 323 362 66 60 chr1 123688863 123689210 -73506222 + HERV16-int LTR ERVL 835 1183 -3813 3 1528 459 353 58 0 chr1 123689271 123689529 -73505903 + HERV16-int LTR ERVL 1261 1533 -3463 3 1528 924 164 0 0 chr1 123689605 123689782 -73505650 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1528 861 262 172 28 chr1 123689895 123690249 -73505183 + MTD LTR MaLR 1 405 -14 3 1528 308 293 30 82 chr1 123690310 123690409 -73505023 - B4A SINE B4 -164 128 33 3 1528 2360 146 11 11 chr1 123690409 123690776 -73504656 + ORR1B2 LTR MaLR 1 367 0 3 1528 308 293 30 82 chr1 123690776 123690810 -73504622 - B4A SINE B4 -260 32 2 3 1528 437 306 24 32 chr1 123690898 123691148 -73504284 - L1MA8 LINE L1 -1 6290 6043 3 1528 678 271 58 43 chr1 123691211 123691419 -73504013 - B4 SINE B4 0 292 82 3 1528 229 222 139 0 chr1 123691601 123691673 -73503759 - L1MA8 LINE L1 -335 5965 5884 3 1528 603 248 7 7 chr1 123692674 123692824 -73502608 - B4 SINE B4 -34 258 109 3 1528 271 148 19 0 chr1 123692855 123692909 -73502523 + B3 SINE B2 161 215 -1 3 1528 432 0 0 0 chr1 123692977 123693025 -73502407 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 3 1528 412 254 0 69 chr1 123693037 123693168 -73502264 + B3 SINE B2 2 123 -93 3 1528 257 232 0 0 chr1 123693801 123693857 -73501575 - Lx8 LINE L1 -2 7471 7416 3 1528 807 85 0 0 chr1 123694100 123694230 -73501202 + (TC)n Simple_repeat Simple_repeat 2 131 0 3 1528 279 0 0 0 chr1 123694230 123694260 -73501172 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1528 467 237 121 8 chr1 123694270 123694402 -73501030 - B3A SINE B2 -48 150 4 3 1528 780 122 0 8 chr1 123694469 123694593 -73500839 - MT2B LTR ERVL 0 601 479 3 1528 1881 108 0 87 chr1 123694582 123694916 -73500516 - ORR1A3 LTR MaLR -21 305 1 3 1528 180 0 0 0 chr1 123695322 123695342 -73500090 + (CG)n Simple_repeat Simple_repeat 2 21 0 3 1528 264 30 0 0 chr1 123695342 123695374 -73500058 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1528 458 42 69 0 chr1 123696155 123696227 -73499205 + L1Md_F3 LINE L1 6507 6583 -1 3 1528 239 176 24 0 chr1 123696411 123696496 -73498936 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 3 1528 303 28 0 0 chr1 123696525 123696561 -73498871 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1528 693 341 93 4 chr1 123696611 123696879 -73498553 - B4 SINE B4 0 292 1 3 1528 329 358 72 6 chr1 123697166 123697346 -73498086 - MIR SINE MIR -34 228 37 3 1528 207 162 0 0 chr1 123697586 123697623 -73497809 + (CATA)n Simple_repeat Simple_repeat 4 40 0 3 1528 192 161 48 0 chr1 123697679 123697741 -73497691 + GA-rich Low_complexity Low_complexity 2 66 0 3 1528 347 284 104 0 chr1 123697746 123697880 -73497552 + B1F2 SINE Alu 1 148 -1 3 1528 792 237 91 0 chr1 123697883 123698081 -73497351 + B3 SINE B2 1 216 0 3 1528 216 286 0 0 chr1 123698081 123698144 -73497288 + A-rich Low_complexity Low_complexity 1 63 0 3 1528 361 243 25 101 chr1 123698651 123698770 -73496662 + RSINE1 SINE B4 2 111 -54 3 1528 540 319 5 27 chr1 123700068 123700252 -73495180 - B3A SINE B2 -17 181 2 3 1528 444 19 0 0 chr1 123700596 123700649 -73494783 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1528 477 231 150 23 chr1 123700661 123700794 -73494638 - B3A SINE B2 -47 151 2 3 1528 206 254 34 0 chr1 123701062 123701121 -73494311 + L2 LINE L2 2836 2896 -523 3 1528 1078 112 6 6 chr1 123701440 123701619 -73493813 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 3 1528 620 266 0 0 chr1 123701649 123701777 -73493655 - B1_Mur1 SINE Alu -19 130 3 3 1528 721 292 57 32 chr1 123702167 123702483 -73492949 + MTD LTR MaLR 1 325 -75 3 1528 351 270 40 0 chr1 123702487 123702583 -73492849 + MTD LTR MaLR 269 368 -51 3 1528 1571 189 24 17 chr1 123702583 123702954 -73492478 + MTC LTR MaLR 3 413 -8 3 1528 333 133 16 16 chr1 123702958 123703019 -73492413 + MTE2b LTR MaLR 319 379 0 3 1528 979 158 184 0 chr1 123703061 123703251 -73492181 - URR1B DNA MER1_type 0 225 1 3 1528 830 313 22 26 chr1 123703438 123703710 -73491722 + B4 SINE B4 14 284 -8 3 1528 324 264 18 22 chr1 123704032 123704149 -73491283 - B4A SINE B4 -45 120 1 3 1528 2538 63 15 3 chr1 123704156 123704490 -73490942 + L1_Mus1 LINE L1 6228 6565 -2 3 1528 417 20 0 0 chr1 123705061 123705111 -73490321 + (CCAA)n Simple_repeat Simple_repeat 4 53 0 3 1528 186 43 0 0 chr1 123705134 123705157 -73490275 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1528 627 293 50 20 chr1 123705819 123706021 -73489411 - ID_B1 SINE B4 -2 222 15 3 1528 380 244 36 22 chr1 123707111 123707249 -73488183 + RMER15 LTR ERVL 2 141 -434 3 1528 332 284 21 10 chr1 123707267 123707363 -73488069 + RMER15 LTR ERVL 272 368 -207 3 1528 410 162 14 0 chr1 123707378 123707452 -73487980 + RMER15 LTR ERVL 446 520 -55 3 1528 670 223 8 0 chr1 123708036 123708166 -73487266 + B3A SINE B2 4 134 -64 3 1528 1425 176 51 95 chr1 123708504 123708874 -73486558 + ORR1B1 LTR MaLR 41 394 0 3 1528 450 0 0 0 chr1 123708951 123709001 -73486431 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1528 1237 243 38 28 chr1 123709758 123710076 -73485356 - ORR1E LTR MaLR 0 359 39 3 1528 719 222 20 14 chr1 123710508 123710654 -73484778 - B1_Mur1 SINE Alu -2 147 1 3 1528 303 148 79 32 chr1 123710682 123710745 -73484687 - HAL1-3A_ME LINE L1 -818 2040 1975 3 1528 248 140 40 0 chr1 123710750 123710800 -73484632 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 3 1528 615 250 12 59 chr1 123710807 123710977 -73484455 - RSINE1 SINE B4 0 165 4 3 1528 498 329 0 28 chr1 123711434 123711578 -73483854 + RSINE1 SINE B4 4 143 -22 3 1528 396 229 83 65 chr1 123711619 123711787 -73483645 - L1MA7 LINE L1 -15 6276 6106 3 1528 390 115 0 0 chr1 123711906 123711967 -73483465 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1528 532 329 7 0 chr1 123711969 123712106 -73483326 - RSINE1 SINE B4 -24 141 4 3 1528 386 346 50 60 chr1 123712207 123712407 -73483025 - B3A SINE B2 0 198 1 3 1528 540 353 31 36 chr1 123712421 123712806 -73482626 - L1M3b LINE L1 -4933 1348 966 3 1528 24 0 0 0 chr1 123713477 123713501 -73481931 + AT_rich Low_complexity Low_complexity 1 24 0 3 1528 459 280 86 21 chr1 123713640 123713826 -73481606 + B3A SINE B2 1 198 0 3 1528 1665 283 117 9 chr1 123714209 123714976 -73480456 + L1MC1 LINE L1 5287 6136 -197 3 1528 928 279 0 26 chr1 123715117 123715345 -73480087 - ID_B1 SINE B4 -2 222 1 3 1528 305 358 37 0 chr1 123715878 123715987 -73479445 - B4 SINE B4 0 292 180 3 1528 1658 167 0 10 chr1 123716079 123716395 -73479037 - L1_Mm LINE L1 -1143 5000 4694 3 1528 203 0 37 0 chr1 123716409 123716436 -73478996 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1528 600 250 72 36 chr1 123716436 123716602 -73478830 - Lx5 LINE L1 -384 6666 6495 4 1528 4563 170 100 8 chr1 123716610 123717774 -73477658 - Lx5 LINE L1 -804 6246 4981 4 1528 8576 29 1 0 chr1 123717784 123718872 -73476560 - L1Md_T LINE L1 0 6582 5494 4 1528 552 132 0 0 chr1 123718870 123718953 -73476479 - Lx5 LINE L1 -909 4968 4886 4 1528 264 387 125 30 chr1 123719149 123719413 -73476019 - B4A SINE B4 -1 291 3 4 1528 271 313 0 24 chr1 123719845 123719930 -73475502 + (TATG)n Simple_repeat Simple_repeat 4 86 0 4 1528 43 64 0 0 chr1 123719980 123720058 -73475374 + AT_rich Low_complexity Low_complexity 1 78 0 4 1528 888 248 48 0 chr1 123720073 123720279 -73475153 - B3 SINE B2 0 216 1 4 1528 451 353 12 6 chr1 123720279 123720447 -73474985 - B4A SINE B4 -60 232 64 4 1528 220 284 22 22 chr1 123720516 123720606 -73474826 + CT-rich Low_complexity Low_complexity 1 90 0 4 1528 358 156 0 72 chr1 123720606 123720675 -73474757 + ORR1C1 LTR MaLR 1 64 -310 4 1528 432 51 102 0 chr1 123720678 123720737 -73474695 - L1_Mur2 LINE L1 -713 5164 5100 4 1528 7467 103 20 1 chr1 123720738 123722174 -73473258 + L1_Mus4 LINE L1 5176 6633 -3 4 1528 1526 209 7 17 chr1 123722182 123722479 -73472953 + ORR1C1 LTR MaLR 85 378 0 4 1528 312 246 0 52 chr1 123722479 123722595 -73472837 + CT-rich Low_complexity Low_complexity 1 110 0 4 1528 232 359 74 42 chr1 123722596 123722785 -73472647 + MLT1A LTR MaLR 174 368 -6 4 1528 409 325 201 36 chr1 123723366 123723615 -73471817 - B4A SINE B4 0 292 3 4 1528 958 307 17 70 chr1 123724268 123724566 -73470866 + B4 SINE B4 2 283 -9 4 1528 22 56 0 0 chr1 123725179 123725215 -73470217 + AT_rich Low_complexity Low_complexity 1 36 0 4 1528 276 320 52 44 chr1 123725239 123725468 -73469964 - Lx8 LINE L1 -54 7419 7189 4 1528 882 272 5 0 chr1 123725734 123725947 -73469485 - B3 SINE B2 -1 215 2 4 1528 964 267 134 32 chr1 123725991 123726335 -73469097 - MTEa LTR MaLR 0 379 1 4 1528 378 169 0 0 chr1 123726335 123726394 -73469038 + ID_B1 SINE B4 160 218 -6 4 1528 291 221 93 0 chr1 123727537 123727623 -73467809 + RMER15 LTR ERVL 61 154 -421 4 1528 2207 82 23 0 chr1 123727936 123728240 -73467192 - L1_Mus3 LINE L1 -6 6632 6322 4 1528 562 259 39 69 chr1 123728326 123728529 -73466903 - B3A SINE B2 0 198 2 4 1528 675 246 189 4 chr1 123728911 123729144 -73466288 + B4A SINE B4 2 277 -15 4 1528 1050 32 0 0 chr1 123729247 123729373 -73466059 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 1528 294 327 139 26 chr1 123729998 123730149 -73465283 + B3A SINE B2 1 168 -30 4 1528 545 72 12 0 chr1 123730152 123730235 -73465197 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1528 22 35 0 0 chr1 123730448 123730477 -73464955 + AT_rich Low_complexity Low_complexity 1 29 0 4 1528 273 288 112 21 chr1 123730484 123730725 -73464707 - L1MA7 LINE L1 -19 6272 6010 4 1528 342 0 0 0 chr1 123730728 123730766 -73464666 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1528 279 288 37 12 chr1 123730887 123730968 -73464464 - ID_B1 SINE B4 -10 214 132 4 1528 511 228 107 12 chr1 123731070 123731239 -73464193 - Lx6 LINE L1 -92 7368 7184 4 1528 238 216 39 0 chr1 123731240 123731291 -73464141 + ID SINE ID 1 53 -171 4 1528 213 264 19 0 chr1 123731305 123731358 -73464074 - ID SINE ID -170 54 1 4 1529 423 0 0 0 chr1 123732855 123732902 -73462530 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1529 410 303 11 28 chr1 123733241 123733421 -73462011 + (TATG)n Simple_repeat Simple_repeat 3 179 0 4 1529 346 237 7 7 chr1 123733423 123733563 -73461869 + (TG)n Simple_repeat Simple_repeat 1 140 0 4 1529 700 235 132 44 chr1 123733760 123733965 -73461467 + B4 SINE B4 26 248 -44 4 1529 410 36 18 0 chr1 123734001 123734057 -73461375 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1529 7782 50 1 2 chr1 123734501 123735797 -73459635 - L1Md_F2 LINE L1 0 6582 5288 4 1529 253 293 26 13 chr1 123735944 123736020 -73459412 + ID4_ SINE ID 4 80 -3 4 1529 424 303 0 0 chr1 123736047 123736146 -73459286 + B3A SINE B2 3 101 -97 4 1529 204 40 0 0 chr1 123736662 123736687 -73458745 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1529 296 242 0 57 chr1 123736693 123736763 -73458669 - B4 SINE B4 -11 281 216 4 1529 663 368 34 17 chr1 123736786 123737024 -73458408 - B4 SINE B4 -44 248 7 4 1529 294 29 0 0 chr1 123737042 123737077 -73458355 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1529 201 250 0 0 chr1 123737428 123737468 -73457964 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1529 631 234 124 17 chr1 123737509 123737687 -73457745 + B3A SINE B2 1 197 -1 4 1529 740 265 40 58 chr1 123737705 123737929 -73457503 - ID_B1 SINE B4 -3 221 2 4 1529 1146 280 106 55 chr1 123737935 123738741 -73456691 - L1MA8 LINE L1 -31 6260 5414 4 1529 740 107 17 35 chr1 123738741 123738857 -73456575 + PB1D9 SINE Alu 1 114 -6 4 1529 303 143 0 0 chr1 123738897 123738946 -73456486 - L1MA8 LINE L1 -747 5421 5373 4 1529 460 231 89 93 chr1 123738947 123739309 -73456123 - MTE2a LTR MaLR -2 377 1 4 1529 768 269 158 12 chr1 123739313 123739723 -73455709 - L1MA8 LINE L1 -772 5368 4899 4 1529 244 206 27 81 chr1 123739723 123739797 -73455635 - LTR89 LTR ERVL? -391 488 419 4 1529 302 225 27 40 chr1 123739798 123739872 -73455560 - L1MA8 LINE L1 -1313 4830 4758 4 1529 444 241 34 43 chr1 123739882 123739999 -73455433 - B1F SINE Alu -11 138 23 4 1529 818 47 0 86 chr1 123740000 123740189 -73455243 - L1Md_F3 LINE L1 0 6584 6436 4 1529 508 299 62 14 chr1 123740842 123740988 -73454444 + LSU-rRNA_Hsa rRNA rRNA 4805 4957 -78 4 1529 300 187 40 0 chr1 123741005 123741080 -73454352 - L1MA8 LINE L1 -1410 4733 4656 4 1529 262 283 178 63 chr1 123741085 123741338 -73454094 + L2c LINE L2 3087 3368 -19 4 1529 26 0 0 0 chr1 123741690 123741716 -73453716 + AT_rich Low_complexity Low_complexity 1 26 0 4 1529 1034 282 3 55 chr1 123741765 123742073 -73453359 - B4 SINE B4 0 292 1 4 1529 554 314 0 0 chr1 123742536 123742657 -73452775 + RSINE1 SINE B4 3 123 -42 4 1529 276 30 0 0 chr1 123742668 123742701 -73452731 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1529 333 310 34 42 chr1 123743133 123743251 -73452181 + RSINE1 SINE B4 2 118 -47 4 1529 510 46 0 0 chr1 123743268 123743333 -73452099 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1529 753 267 10 30 chr1 123743428 123743629 -73451803 + B3A SINE B2 2 198 0 4 1529 348 271 42 21 chr1 123743761 123743904 -73451528 + L1M5 LINE L1 4473 4618 -1528 4 1529 2632 64 3 3 chr1 123744023 123744350 -73451082 + ORR1A2 LTR MaLR 1 327 0 4 1529 820 310 23 65 chr1 123744359 123744756 -73450676 - Lx8 LINE L1 -116 7357 6978 4 1529 333 271 45 58 chr1 123745327 123745550 -73449882 + L1M5 LINE L1 5262 5481 -713 4 1529 545 330 32 60 chr1 123745674 123745955 -73449477 + B4A SINE B4 2 274 -18 4 1529 459 0 0 0 chr1 123745969 123746020 -73449412 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1529 22 0 0 0 chr1 123746057 123746079 -73449353 + AT_rich Low_complexity Low_complexity 1 22 0 4 1529 483 319 6 35 chr1 123746504 123746673 -73448759 - RSINE1 SINE B4 0 165 2 4 1529 893 272 50 145 chr1 123746681 123747123 -73448309 - MTC LTR MaLR -21 400 1 4 1529 533 105 12 0 chr1 123747160 123747246 -73448186 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 1529 536 274 76 31 chr1 123747251 123747389 -73448043 - BLACKJACK DNA AcHobo -414 2530 2387 4 1529 1015 129 99 6 chr1 123747389 123747560 -73447872 + B2_Mm2 SINE B2 1 187 -8 4 1529 536 274 76 31 chr1 123747560 123747711 -73447721 - BLACKJACK DNA AcHobo -558 2386 2228 4 1529 1254 276 205 55 chr1 123747745 123748377 -73447055 - BLACKJACK DNA AcHobo -812 2132 1438 4 1529 1234 240 38 78 chr1 123748377 123748748 -73446684 + ORR1E LTR MaLR 4 359 0 4 1529 1254 276 205 55 chr1 123748748 123749172 -73446260 - BLACKJACK DNA AcHobo -1507 1437 918 4 1529 457 339 60 18 chr1 123749242 123749527 -73445905 + Lx8 LINE L1 7160 7456 -17 4 1529 387 196 63 0 chr1 123749552 123749710 -73445722 + (TA)n Simple_repeat Simple_repeat 1 168 0 4 1529 216 0 0 0 chr1 123749886 123749910 -73445522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1529 851 184 0 11 chr1 123750122 123750303 -73445129 + GA-rich Low_complexity Low_complexity 2 180 0 4 1529 449 122 24 0 chr1 123750305 123750387 -73445045 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 4 1529 1112 223 64 0 chr1 123750387 123750638 -73444794 - MTE2b LTR MaLR -54 325 59 4 1529 904 299 20 44 chr1 123751398 123751443 -73443989 - B4 SINE B4 -2 290 251 4 1529 1441 232 53 43 chr1 123751443 123751496 -73443936 - MTD LTR MaLR 0 419 355 4 1529 432 0 0 0 chr1 123751496 123751544 -73443888 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 4 1529 1441 232 53 43 chr1 123751544 123751905 -73443527 - MTD LTR MaLR -65 354 1 4 1529 904 299 20 44 chr1 123751905 123752156 -73443276 - B4 SINE B4 -42 250 1 4 1529 819 0 0 0 chr1 123752832 123752923 -73442509 + (TTTC)n Simple_repeat Simple_repeat 4 94 0 4 1529 410 232 71 0 chr1 123753100 123753199 -73442233 - RMER15 LTR ERVL -54 521 416 4 1529 257 132 0 0 chr1 123753205 123753258 -73442174 - L1_Mus4 LINE L1 -1 6635 6583 4 1529 1146 62 68 0 chr1 123753258 123753419 -73442013 - L1_Mus4 LINE L1 -414 6222 6051 4 1529 665 238 112 16 chr1 123753426 123753703 -73441729 - RMER15 LTR ERVL -155 420 29 4 1529 21 0 0 0 chr1 123754328 123754349 -73441083 + AT_rich Low_complexity Low_complexity 1 21 0 4 1529 26 30 0 0 chr1 123754359 123754392 -73441040 + AT_rich Low_complexity Low_complexity 1 33 0 4 1529 223 0 79 26 chr1 123754408 123754446 -73440986 + (TTTAA)n Simple_repeat Simple_repeat 1 40 0 4 1529 27 0 0 0 chr1 123754458 123754485 -73440947 + AT_rich Low_complexity Low_complexity 1 27 0 4 1529 182 37 0 36 chr1 123754554 123754582 -73440850 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1529 2208 80 0 13 chr1 123754583 123754899 -73440533 - L1Md_F2 LINE L1 -33 6549 6238 4 1529 32717 82 17 2 chr1 123754915 123761029 -73434403 - L1Md_F2 LINE L1 -23 6559 363 4 1529 8584 138 32 7 chr1 123761224 123762640 -73432792 + Lx4A LINE L1 5588 7039 -19 4 1529 356 59 0 19 chr1 123762640 123762692 -73432740 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1529 579 266 32 41 chr1 123762940 123763214 -73432218 - L1MA4 LINE L1 -382 5918 5578 4 1529 453 306 68 15 chr1 123763486 123763692 -73431740 + MER57F LTR ERV1 1 217 -219 4 1529 273 333 54 9 chr1 123763754 123763866 -73431566 - MER115 DNA Tip100 -68 625 509 4 1529 276 120 0 0 chr1 123764237 123764287 -73431145 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1529 831 242 142 4 chr1 123764323 123764576 -73430856 + B4A SINE B4 1 288 -4 5 1529 447 19 0 0 chr1 123764695 123764747 -73430685 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1529 431 35 18 0 chr1 123764820 123764877 -73430555 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1529 299 342 13 0 chr1 123764886 123764965 -73430467 - RSINE1 SINE B4 -4 161 82 5 1529 387 320 21 67 chr1 123764970 123765164 -73430268 - B4A SINE B4 -104 188 4 5 1529 804 308 83 16 chr1 123765559 123765945 -73429487 + Lx8 LINE L1 7053 7464 -9 5 1529 495 0 0 0 chr1 123766578 123766633 -73428799 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1529 442 297 78 53 chr1 123766694 123766975 -73428457 - B4A SINE B4 0 292 5 5 1529 376 302 124 110 chr1 123767832 123767977 -73427455 - B4 SINE B4 0 292 146 5 1529 570 338 179 6 chr1 123768104 123768584 -73426848 + L2 LINE L2 1881 2443 -976 5 1529 1212 7 0 0 chr1 123768986 123769123 -73426309 + (TCTCCC)n Simple_repeat Simple_repeat 3 139 0 5 1529 234 176 0 0 chr1 123769170 123769221 -73426211 + CT-rich Low_complexity Low_complexity 2 52 0 5 1529 408 317 68 58 chr1 123769252 123769342 -73426090 - B4 SINE B4 -8 284 191 5 1529 608 59 12 0 chr1 123769342 123769427 -73426005 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 5 1529 408 317 68 58 chr1 123769427 123769614 -73425818 - B4 SINE B4 -102 190 4 5 1529 1164 312 48 22 chr1 123770151 123770508 -73424924 - MTE2a LTR MaLR -13 366 1 5 1529 561 260 152 51 chr1 123770621 123770799 -73424633 + B3A SINE B2 3 198 0 5 1529 678 298 53 5 chr1 123771071 123771260 -73424172 + B3A SINE B2 1 198 0 5 1529 314 397 28 7 chr1 123771812 123771954 -73423478 + MER5A DNA MER1_type 39 183 -6 5 1529 724 318 69 21 chr1 123772068 123772486 -73422946 + Lx8 LINE L1 6970 7407 -66 5 1529 822 208 63 15 chr1 123772649 123772854 -73422578 - L1_Rod LINE L1 -31 5816 5602 5 1529 975 235 48 98 chr1 123774475 123774871 -73420561 + MTE2a LTR MaLR 4 379 0 5 1529 519 17 0 0 chr1 123775117 123775177 -73420255 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1529 4394 71 27 7 chr1 123775183 123775768 -73419664 - Lx3_Mus LINE L1 -16 6993 6397 5 1529 4969 91 42 3 chr1 123775769 123776509 -73418923 + Lx3_Mus LINE L1 5627 6395 -614 5 1529 1358 274 56 15 chr1 123776542 123777061 -73418371 - Lx8 LINE L1 -20 7453 6914 5 1529 641 251 177 102 chr1 123777705 123777971 -73417461 + B4 SINE B4 7 292 0 5 1529 221 186 14 0 chr1 123777972 123778042 -73417390 + CT-rich Low_complexity Low_complexity 2 72 0 5 1529 1051 300 29 14 chr1 123778755 123779036 -73416396 + B4A SINE B4 6 290 -2 5 1529 760 270 6 12 chr1 123779862 123780027 -73415405 + B4 SINE B4 129 292 0 5 1529 545 28 14 0 chr1 123780030 123780101 -73415331 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1529 476 333 0 0 chr1 123780215 123780341 -73415091 - MER5A DNA MER1_type -63 126 1 5 1529 269 282 110 49 chr1 123780802 123780884 -73414548 + B4A SINE B4 63 149 -143 5 1529 2551 225 157 34 chr1 123780893 123781714 -73413718 - RMER19B LTR ERVK -12 890 1 5 1529 520 288 0 95 chr1 123781714 123781883 -73413549 + B4A SINE B4 140 292 0 5 1529 359 113 16 0 chr1 123781909 123781971 -73413461 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1529 180 179 0 0 chr1 123782323 123782362 -73413070 + GA-rich Low_complexity Low_complexity 1 39 0 5 1529 240 35 0 0 chr1 123782367 123782396 -73413036 + (CTG)n Simple_repeat Simple_repeat 1 29 0 5 1529 1060 273 14 0 chr1 123782428 123782648 -73412784 - MTE2b LTR MaLR -132 247 25 5 1529 864 196 9 0 chr1 123782666 123782894 -73412538 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 5 1529 204 40 0 0 chr1 123782894 123782919 -73412513 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 1529 2684 28 156 0 chr1 123782919 123783271 -73412161 + IAPLTR2a LTR ERVK 4 410 -1 5 1529 666 25 0 0 chr1 123783271 123783351 -73412081 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 5 1529 188 316 60 21 chr1 123783550 123783648 -73411784 + MIRm SINE MIR 41 148 -128 5 1529 1044 257 21 29 chr1 123783741 123784021 -73411411 - B4 SINE B4 -12 280 3 5 1529 255 349 28 90 chr1 123784911 123785056 -73410376 - B1_Mur3 SINE Alu -9 140 5 5 1529 201 373 124 4 chr1 123785210 123785444 -73409988 + L2 LINE L2 1163 1424 -1995 5 1529 856 311 39 50 chr1 123785812 123786093 -73409339 - B4A SINE B4 0 292 15 5 1529 180 0 0 0 chr1 123786316 123786336 -73409096 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1529 1843 254 116 17 chr1 123786336 123787232 -73408200 - RMER1B Other Other -14 1052 1 5 1529 22 0 0 0 chr1 123787375 123787397 -73408035 + AT_rich Low_complexity Low_complexity 1 22 0 5 1529 327 288 35 92 chr1 123787721 123787890 -73407542 + L1MA6 LINE L1 6047 6199 -101 5 1529 672 326 64 29 chr1 123787890 123788171 -73407261 - B4A SINE B4 0 292 2 5 1529 327 288 35 92 chr1 123788171 123788261 -73407171 + L1MA6 LINE L1 6200 6290 -10 5 1529 1686 190 42 3 chr1 123788306 123788612 -73406820 + ORR1A3 LTR MaLR 1 318 -8 5 1529 211 296 0 18 chr1 123789084 123789139 -73406293 + B4A SINE B4 87 140 -152 5 1529 2327 97 0 0 chr1 123789325 123789634 -73405798 + RLTR27 LTR ERVK 1 309 0 5 1529 1151 248 161 9 chr1 123790045 123790367 -73405065 - MTEa LTR MaLR -8 371 1 5 1529 475 316 36 26 chr1 123791151 123791346 -73404086 - B3A SINE B2 0 198 2 5 1529 1615 86 28 36 chr1 123791459 123791712 -73403720 - L1Md_F2 LINE L1 0 6582 6332 5 1529 226 286 71 0 chr1 123791968 123792038 -73403394 - MIR3 SINE MIR -46 162 88 5 1529 324 308 93 0 chr1 123792227 123792334 -73403098 - B4A SINE B4 -175 117 1 5 1529 571 346 70 0 chr1 123793323 123793551 -73401881 + MLT1A0 LTR MaLR 89 332 -33 5 1529 372 239 16 66 chr1 123793636 123793757 -73401675 - PB1D10 SINE Alu 0 117 3 5 1529 300 120 0 0 chr1 123793849 123793899 -73401533 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1529 464 307 32 69 chr1 123793899 123794088 -73401344 - B3A SINE B2 -16 182 1 5 1529 219 69 0 0 chr1 123794095 123794124 -73401308 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1529 30661 87 17 3 chr1 123794294 123799493 -73395939 + L1Md_F LINE L1 392 5669 -214 5 1529 1673 107 3 49 chr1 123799493 123799777 -73395655 + L1Md_F2 LINE L1 6310 6580 -2 5 1529 455 316 6 12 chr1 123800028 123800201 -73395231 + (CA)n Simple_repeat Simple_repeat 1 172 0 5 1529 192 200 0 0 chr1 123800224 123800269 -73395163 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1529 369 109 0 0 chr1 123800367 123800422 -73395010 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1529 213 219 0 0 chr1 123800424 123800543 -73394889 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 5 1529 248 236 18 0 chr1 123800559 123800614 -73394818 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1529 915 243 29 5 chr1 123800710 123800917 -73394515 - B3 SINE B2 -4 212 1 5 1529 328 311 136 55 chr1 123801800 123802167 -73393265 + L1M5 LINE L1 4300 4696 -1450 5 1529 942 115 0 0 chr1 123802207 123802381 -73393051 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 5 1529 300 179 74 0 chr1 123802928 123803023 -73392409 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 5 1529 414 0 0 0 chr1 123803171 123803217 -73392215 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1529 231 167 0 0 chr1 123804931 123804979 -73390453 + L1M2 LINE L1 5750 5797 -500 5 1529 202 87 21 21 chr1 123804980 123805027 -73390405 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1529 542 263 37 31 chr1 123805897 123806058 -73389374 - RSINE1 SINE B4 -2 163 2 5 1529 470 272 156 12 chr1 123806347 123806507 -73388925 - B3A SINE B2 -15 183 1 5 1529 509 250 47 35 chr1 123806867 123807099 -73388333 - L1MD3 LINE L1 -10 7985 7751 5 1529 234 344 65 41 chr1 123807114 123807398 -73388034 + L2b LINE L2 2846 3133 -242 5 1529 285 325 62 23 chr1 123807552 123807681 -73387751 - MLT1E2 LTR MaLR 0 627 494 5 1529 488 16 16 0 chr1 123807855 123807916 -73387516 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 5 1529 210 37 0 0 chr1 123807970 123807997 -73387435 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5 1529 221 57 29 0 chr1 123808028 123808063 -73387369 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 5 1529 7998 44 23 1 chr1 123808151 123809188 -73386244 + MTA_Mm-int LTR MaLR 39 1098 0 5 1529 3446 30 2 0 chr1 123809188 123809583 -73385849 + MTA_Mm LTR MaLR 1 396 0 5 1529 401 303 154 29 chr1 123809762 123809898 -73385534 + B4 SINE B4 140 292 0 5 1529 214 254 18 0 chr1 123810079 123810134 -73385298 + GA-rich Low_complexity Low_complexity 1 56 0 5 1529 308 211 0 13 chr1 123810835 123810912 -73384520 + GA-rich Low_complexity Low_complexity 4 79 0 5 1529 678 105 0 0 chr1 123810993 123811098 -73384334 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1529 828 236 59 34 chr1 123811604 123811841 -73383591 + MTE2b LTR MaLR 3 245 -134 5 1529 30 0 0 0 chr1 123811942 123811972 -73383460 + AT_rich Low_complexity Low_complexity 1 30 0 5 1529 890 183 156 0 chr1 123811978 123812164 -73383268 - B3 SINE B2 0 216 2 5 1529 216 0 0 0 chr1 123812190 123812214 -73383218 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1529 1637 197 3 34 chr1 123812325 123812677 -73382755 - RMER1C Other Other -164 1178 838 5 1529 746 124 20 74 chr1 123812678 123812826 -73382606 + RMER1C Other Other 1201 1340 -2 5 1529 210 143 0 0 chr1 123813637 123813672 -73381760 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 5 1529 582 273 120 77 chr1 123813770 123814044 -73381388 + B4A SINE B4 2 287 -5 5 1529 459 0 0 0 chr1 123814044 123814095 -73381337 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1529 34 24 0 0 chr1 123814210 123814251 -73381181 + AT_rich Low_complexity Low_complexity 1 41 0 5 1529 1572 244 57 6 chr1 123814579 123814933 -73380499 + MTEa LTR MaLR 3 374 -5 5 1529 2095 205 54 13 chr1 123814995 123815385 -73380047 - MTC LTR MaLR 0 421 16 6 1529 237 416 43 5 chr1 123815499 123815709 -73379723 + MLT1I-int LTR MaLR 209 426 -961 6 1529 254 234 0 15 chr1 123815912 123815977 -73379455 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1529 879 322 55 26 chr1 123816005 123816276 -73379156 + B4 SINE B4 14 292 0 6 1529 229 280 40 0 chr1 123816337 123816412 -73379020 + MLT2B4 LTR ERVL 10 87 -469 6 1529 784 304 0 38 chr1 123816389 123816628 -73378804 - B4 SINE B4 -58 234 5 6 1529 3799 55 0 2 chr1 123816853 123817324 -73378108 - L1_Mus1 LINE L1 0 6567 6098 6 1529 975 260 124 23 chr1 123817327 123817634 -73377798 - MT2A LTR ERVL -9 524 187 6 1529 924 297 109 27 chr1 123817646 123817875 -73377557 - MT2A LTR ERVL -73 460 211 6 1529 1925 180 16 6 chr1 123817875 123818238 -73377194 + ORR1B2 LTR MaLR 1 367 0 6 1529 924 297 109 27 chr1 123818238 123818420 -73377012 - MT2A LTR ERVL -323 210 15 6 1529 373 308 200 0 chr1 123818658 123818788 -73376644 + MLT1I LTR MaLR 251 406 -5 6 1529 648 59 0 0 chr1 123818817 123818902 -73376530 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1529 401 123 0 27 chr1 123819151 123819226 -73376206 + (TCC)n Simple_repeat Simple_repeat 3 75 0 6 1529 317 290 133 30 chr1 123819305 123819440 -73375992 + RSINE1 SINE B4 3 151 -14 6 1529 22 0 0 0 chr1 123819449 123819471 -73375961 + AT_rich Low_complexity Low_complexity 1 22 0 6 1529 594 24 24 12 chr1 123819993 123820078 -73375354 + (TA)n Simple_repeat Simple_repeat 1 86 0 6 1529 21 36 0 0 chr1 123820122 123820150 -73375282 + AT_rich Low_complexity Low_complexity 1 28 0 6 1529 581 105 11 0 chr1 123820177 123820272 -73375160 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1529 867 294 102 4 chr1 123820272 123820518 -73374914 - B4 SINE B4 -22 270 1 6 1529 3623 189 38 16 chr1 123820862 123821609 -73373823 - Lx3C LINE L1 -60 6916 6154 6 1529 934 176 14 24 chr1 123821600 123821810 -73373622 - L1_Mur2 LINE L1 -1198 4679 4472 6 1529 4827 145 59 2 chr1 123821809 123822695 -73372737 + L1_Mur2 LINE L1 3406 4341 -1536 6 1529 781 299 28 19 chr1 123822771 123822986 -73372446 - ID_B1 SINE B4 -2 222 6 6 1529 535 270 33 67 chr1 123823218 123823481 -73371951 - MTEa LTR MaLR 0 379 115 6 1529 352 333 58 0 chr1 123823516 123823636 -73371796 - MTD LTR MaLR 0 419 293 6 1529 277 271 0 0 chr1 123823654 123823713 -73371719 + MTD LTR MaLR 108 166 -253 6 1529 291 146 0 0 chr1 123823738 123823793 -73371639 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1529 205 258 0 0 chr1 123823821 123823887 -73371545 + T-rich Low_complexity Low_complexity 1 66 0 6 1529 26 50 0 0 chr1 123823998 123824038 -73371394 + AT_rich Low_complexity Low_complexity 1 40 0 6 1529 996 229 67 0 chr1 123824040 123824250 -73371182 + MTD LTR MaLR 196 419 0 6 1529 808 280 10 5 chr1 123824489 123824683 -73370749 + B3A SINE B2 1 195 -3 6 1529 1078 215 9 0 chr1 123824922 123825145 -73370287 - URR1B DNA MER1_type 0 225 1 6 1529 996 199 5 0 chr1 123825581 123825797 -73369635 + L1_Mur2 LINE L1 920 1136 -5950 6 1529 1534 160 3 7 chr1 123825800 123826089 -73369343 + L1_Mur2 LINE L1 2162 2449 -3428 6 1529 711 183 253 11 chr1 123826812 123826994 -73368438 + URR1A DNA MER1_type 1 226 0 6 1529 4998 76 12 1 chr1 123827964 123828689 -73366743 - L1Md_F2 LINE L1 -1083 4800 4068 6 1529 5750 65 2 5 chr1 123828687 123829474 -73365958 + L1Md_F2 LINE L1 4802 5586 -297 6 1529 7559 70 2 4 chr1 123829475 123830458 -73364974 + L1Md_F2 LINE L1 5588 6568 -14 6 1529 227 153 32 48 chr1 123830883 123830945 -73364487 + GA-rich Low_complexity Low_complexity 6 66 0 6 1529 249 351 46 35 chr1 123830995 123831169 -73364263 + RMER15 LTR ERVL 399 574 -1 6 1529 717 241 0 0 chr1 123831435 123831572 -73363860 + B1_Mur1 SINE Alu 2 138 -11 6 1529 800 131 21 0 chr1 123831709 123831854 -73363578 + C-rich Low_complexity Low_complexity 5 152 0 6 1529 245 325 0 24 chr1 123831925 123832010 -73363422 + CT-rich Low_complexity Low_complexity 1 83 0 6 1529 339 300 0 29 chr1 123832078 123832181 -73363251 - BC1_Mm scRNA scRNA -52 100 1 6 1529 507 198 15 71 chr1 123832208 123832404 -73363028 - Lx9 LINE L1 -2 7642 7458 6 1529 818 105 45 0 chr1 123833114 123833247 -73362185 + URR1A DNA MER1_type 81 219 -7 6 1529 896 282 41 118 chr1 123833540 123833996 -73361436 - MTC LTR MaLR -14 407 1 6 1529 1128 229 82 99 chr1 123834021 123834485 -73360947 - MT2A LTR ERVL -2 599 1 6 1529 183 42 0 0 chr1 123834954 123834978 -73360454 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1529 23 0 0 0 chr1 123835111 123835134 -73360298 + AT_rich Low_complexity Low_complexity 1 23 0 6 1529 183 42 0 0 chr1 123835541 123835565 -73359867 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1529 759 253 22 0 chr1 123835762 123835940 -73359492 - B3A SINE B2 -16 182 1 6 1529 411 171 0 0 chr1 123835948 123836024 -73359408 + T-rich Low_complexity Low_complexity 20 95 0 6 1529 4067 42 28 4 chr1 123836057 123836561 -73358871 - L1Md_F2 LINE L1 -2 6580 6065 6 1529 2242 36 0 48 chr1 123836568 123836861 -73358571 - L1Md_F3 LINE L1 -12 6572 6294 6 1529 456 97 3 2 chr1 123836861 123836938 -73358494 + L1_Mm LINE L1 4363 4438 -1442 6 1529 682 226 24 30 chr1 123837687 123837851 -73357581 - RSINE1 SINE B4 0 165 3 6 1529 330 87 0 0 chr1 123837854 123837900 -73357532 + (TTA)n Simple_repeat Simple_repeat 1 46 0 6 1529 311 361 45 92 chr1 123837944 123838301 -73357131 - ORR1E LTR MaLR 0 359 20 6 1529 513 385 19 42 chr1 123838867 123838902 -73356530 - B4A SINE B4 -2 290 262 6 1529 306 0 0 0 chr1 123838902 123838936 -73356496 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1529 513 386 19 49 chr1 123838936 123839208 -73356224 - B4A SINE B4 -31 261 2 6 1529 23 0 0 0 chr1 123839678 123839701 -73355731 + AT_rich Low_complexity Low_complexity 1 23 0 6 1529 343 326 42 25 chr1 123839750 123839981 -73355451 - L1MC1 LINE L1 -73 6260 6026 6 1529 960 57 0 0 chr1 123839981 123840104 -73355328 + (TCCA)n Simple_repeat Simple_repeat 3 125 0 6 1529 350 302 279 4 chr1 123840545 123840771 -73354661 + B4 SINE B4 2 289 -3 6 1529 618 14 0 0 chr1 123840793 123840864 -73354568 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1529 263 271 48 48 chr1 123841754 123841878 -73353554 - MLT1J1 LTR MaLR -280 164 41 6 1529 813 21 0 0 chr1 123842007 123842102 -73353330 + (GA)n Simple_repeat Simple_repeat 1 95 0 6 1529 412 190 6 41 chr1 123842431 123842601 -73352831 + (TG)n Simple_repeat Simple_repeat 1 164 0 6 1529 404 323 88 63 chr1 123842661 123842945 -73352487 - B4A SINE B4 0 292 2 6 1529 399 145 0 0 chr1 123843444 123843513 -73351919 + (GGA)n Simple_repeat Simple_repeat 2 70 0 6 1529 802 301 104 12 chr1 123843633 123843892 -73351540 - B4A SINE B4 -2 290 8 6 1529 847 235 15 46 chr1 123844552 123844748 -73350684 + B3A SINE B2 9 198 0 6 1529 891 239 11 58 chr1 123844982 123845101 -73350331 + B3A SINE B2 1 119 -79 6 1529 1077 155 120 0 chr1 123845101 123845301 -73350131 - URR1B DNA MER1_type -1 224 1 6 1529 891 242 16 63 chr1 123845301 123845408 -73350024 + B3A SINE B2 118 216 0 6 1529 789 280 66 0 chr1 123846077 123846259 -73349173 - ID_B1 SINE B4 -2 222 29 6 1529 269 299 39 13 chr1 123846205 123846283 -73349149 - ID4_ SINE ID -2 81 2 6 1529 310 326 34 27 chr1 123846414 123846562 -73348870 + MLT1D LTR MaLR 80 228 -277 6 1529 247 307 57 73 chr1 123846709 123846832 -73348600 - MLT1D LTR MaLR -39 466 346 6 1529 321 353 68 17 chr1 123846863 123847039 -73348393 - ORR1E LTR MaLR -174 185 1 6 1529 392 306 39 58 chr1 123847118 123847274 -73348158 + MLT1D LTR MaLR 346 498 -7 6 1529 346 276 64 43 chr1 123847280 123847420 -73348012 + B1F SINE Alu 5 147 -2 6 1529 255 366 12 0 chr1 123847431 123847513 -73347919 + ID4 SINE ID 1 83 0 6 1529 546 296 15 0 chr1 123849146 123849281 -73346151 + B3A SINE B2 30 166 -32 6 1529 459 0 0 0 chr1 123849284 123849335 -73346097 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1529 615 260 170 138 chr1 123849531 123849937 -73345495 + MTD LTR MaLR 1 419 0 6 1529 401 51 0 0 chr1 123850323 123850382 -73345050 + L1_Mus2 LINE L1 6508 6566 0 6 1529 264 337 0 0 chr1 123850478 123850567 -73344865 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1529 432 0 0 0 chr1 123850569 123850617 -73344815 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1529 369 0 0 0 chr1 123850617 123850657 -73344775 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1529 762 317 8 32 chr1 123850694 123850945 -73344487 - B4A SINE B4 -42 250 6 6 1529 248 196 0 82 chr1 123850952 123851013 -73344419 - Charlie24 DNA MER1_type -6 2444 2389 6 1529 1177 271 41 62 chr1 123851630 123852037 -73343395 - MTE2a LTR MaLR 0 419 10 6 1529 340 271 0 50 chr1 123852322 123852466 -73342966 - L1_Mur3 LINE L1 -515 5782 5613 6 1529 346 341 52 15 chr1 123852599 123852800 -73342632 + L2a LINE L2 2903 3110 -316 6 1529 657 293 20 59 chr1 123853031 123853234 -73342198 - B3A SINE B2 0 198 4 6 1529 332 275 118 21 chr1 123853236 123853362 -73342070 + MTC LTR MaLR 1 127 -252 6 1529 295 296 64 81 chr1 123853349 123853522 -73341910 + RLTR20D LTR ERVK 59 228 -340 6 1529 514 278 109 81 chr1 123853835 123854231 -73341201 + MT2A LTR ERVL 127 533 0 6 1529 256 333 47 20 chr1 123854656 123854806 -73340626 - MIR3 SINE MIR -30 178 25 6 1529 247 337 89 0 chr1 123855308 123855409 -73340023 - B4A SINE B4 -175 117 8 6 1529 281 196 0 38 chr1 123855608 123855661 -73339771 + MER89 LTR ERV1 30 80 -479 6 1529 1411 173 8 24 chr1 123855882 123856136 -73339296 + MTC LTR MaLR 172 421 0 6 1529 463 24 138 23 chr1 123856575 123856662 -73338770 - L1Md_F2 LINE L1 0 6582 6486 6 1529 749 203 72 22 chr1 123856804 123856985 -73338447 - B2_Mm2 SINE B2 -3 192 3 6 1529 995 45 114 0 chr1 123857380 123857512 -73337920 + B1_Mm SINE Alu 1 147 0 6 1529 474 65 0 0 chr1 123857512 123857574 -73337858 + (A)n Simple_repeat Simple_repeat 1 62 0 6 1529 412 290 14 7 chr1 123857612 123857751 -73337681 - Lx8 LINE L1 -700 6773 6634 6 1529 1365 279 100 14 chr1 123858216 123858725 -73336707 + Lx8 LINE L1 6825 7377 -96 7 1529 247 318 28 9 chr1 123859675 123859783 -73335649 + LTR33A LTR ERVL 411 520 0 7 1529 1085 265 85 17 chr1 123860041 123860394 -73335038 + MTEa LTR MaLR 1 377 -2 7 1529 530 176 57 29 chr1 123860614 123860719 -73334713 - B1F SINE Alu 0 117 10 7 1529 587 294 28 11 chr1 123861150 123861299 -73334133 + B3A SINE B2 22 168 -30 7 1529 486 0 0 0 chr1 123861299 123861353 -73334079 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1529 249 298 27 125 chr1 123861353 123861388 -73334044 + B2_Mm2 SINE B2 157 188 -7 7 1529 342 263 106 56 chr1 123861626 123861787 -73333645 + L1MD1 LINE L1 6072 6240 -2 7 1529 23 54 0 0 chr1 123861891 123861928 -73333504 + AT_rich Low_complexity Low_complexity 1 37 0 7 1529 440 86 14 0 chr1 123862269 123862339 -73333093 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1529 739 315 63 29 chr1 123862361 123862600 -73332832 - B4A SINE B4 -45 247 1 7 191 624 299 7 0 chr1 123863036 123863173 -73332259 + B3A SINE B2 1 138 -60 7 1530 885 101 0 0 chr1 123863173 123863321 -73332111 + (CA)n Simple_repeat Simple_repeat 1 148 0 7 1530 474 285 184 41 chr1 123863449 123863694 -73331738 + B4 SINE B4 1 280 -12 7 1530 245 267 37 10 chr1 123863951 123864037 -73331395 + MIR SINE MIR 82 168 -100 7 1530 326 119 35 12 chr1 123864324 123864409 -73331023 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 7 1530 4701 177 11 5 chr1 123864731 123865539 -73329893 + Lx5 LINE L1 6238 7050 0 7 1530 242 220 20 0 chr1 123867134 123867184 -73328248 - MIRm SINE MIR -143 133 83 7 1530 4435 138 76 43 chr1 123867220 123868025 -73327407 + RMER17B LTR ERVK 1 829 -129 7 1530 5843 115 28 77 chr1 123868025 123869059 -73326373 + RLTR13C1 LTR ERVK 1 983 0 7 1530 4435 126 71 22 chr1 123869059 123869185 -73326247 + RMER17B LTR ERVK 830 956 -2 7 1530 372 328 11 33 chr1 123869529 123869712 -73325720 + GA-rich Low_complexity Low_complexity 2 180 0 7 1530 456 62 0 0 chr1 123869733 123869797 -73325635 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1530 389 328 63 66 chr1 123869807 123870078 -73325354 + MLT1B LTR MaLR 49 318 -72 7 1530 804 288 6 6 chr1 123870096 123870274 -73325158 + B3A SINE B2 1 178 -20 7 1530 1124 244 89 13 chr1 123870277 123870617 -73324815 + MTD LTR MaLR 4 400 -19 7 1530 495 216 0 0 chr1 123870623 123870734 -73324698 + (CATA)n Simple_repeat Simple_repeat 2 112 0 7 1530 738 289 145 45 chr1 123871222 123871636 -73323796 + RMER13A LTR ERVK 95 599 -28 7 1530 425 127 13 0 chr1 123871711 123871790 -73323642 + (CCCCCT)n Simple_repeat Simple_repeat 3 82 0 7 1530 469 280 83 73 chr1 123871809 123872098 -73323334 - B4 SINE B4 0 292 1 7 1530 451 189 9 18 chr1 123872555 123872668 -73322764 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 7 1530 955 295 121 21 chr1 123872790 123873171 -73322261 - MTD LTR MaLR 0 419 1 7 1530 381 75 0 0 chr1 123873454 123873507 -73321925 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1530 941 319 53 8 chr1 123873513 123873778 -73321654 - B4 SINE B4 -5 287 11 7 1530 1495 165 16 4 chr1 123874303 123874546 -73320886 - ORR1B1 LTR MaLR 0 394 149 7 1530 2683 150 123 95 chr1 123874547 123875179 -73320253 - RMER17B LTR ERVK -3 955 306 7 1530 871 225 54 36 chr1 123875155 123875376 -73320056 - RLTR28B LTR ERVL -256 225 1 7 1530 405 102 0 0 chr1 123875543 123875602 -73319830 + (TCC)n Simple_repeat Simple_repeat 2 60 0 7 1530 375 316 94 0 chr1 123875620 123875737 -73319695 - B3A SINE B2 -25 173 46 7 1530 973 83 7 7 chr1 123875975 123876121 -73319311 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 7 1530 203 0 0 36 chr1 123876129 123876157 -73319275 + (TTA)n Simple_repeat Simple_repeat 2 28 0 7 1530 423 0 0 0 chr1 123876467 123876514 -73318918 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1530 911 291 37 57 chr1 123876515 123877188 -73318244 + L1MD LINE L1 4530 5189 -957 7 1530 333 68 0 0 chr1 123877280 123877324 -73318108 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1530 394 243 0 0 chr1 123877359 123877433 -73317999 - B4A SINE B4 -4 288 215 7 1530 519 128 0 0 chr1 123877433 123877519 -73317913 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1530 720 302 125 33 chr1 123877540 123877780 -73317652 - B4A SINE B4 -14 278 17 7 1530 270 0 0 0 chr1 123877791 123877821 -73317611 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1530 813 331 16 8 chr1 123877821 123878065 -73317367 - B4A SINE B4 -46 246 1 7 1530 307 293 10 10 chr1 123878544 123878644 -73316788 - Lx7 LINE L1 -1512 6184 6085 7 1530 820 321 89 19 chr1 123878652 123879023 -73316409 + Lx7 LINE L1 6241 6637 -836 7 1530 1215 306 51 10 chr1 123879454 123880036 -73315396 + Lx7 LINE L1 6619 7238 -235 7 1530 947 90 0 0 chr1 123880096 123880229 -73315203 - RMER19A LTR ERVK 0 737 605 7 1530 949 121 34 0 chr1 123880226 123880375 -73315057 - RMER19A LTR ERVK -583 154 1 7 1530 25 31 0 0 chr1 123880551 123880583 -73314849 + AT_rich Low_complexity Low_complexity 1 32 0 7 1530 544 280 70 27 chr1 123880635 123880787 -73314645 + B3A SINE B2 1 163 -35 7 1530 461 17 0 17 chr1 123880787 123880846 -73314586 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1530 544 280 70 27 chr1 123880846 123880880 -73314552 + B3A SINE B2 164 195 -3 7 1530 3123 81 12 2 chr1 123881023 123881446 -73313986 + L1_Mus1 LINE L1 6139 6565 -2 7 1530 1323 102 21 89 chr1 123881478 123881715 -73313717 - MT2B LTR ERVL -380 221 1 7 1530 5201 94 13 2 chr1 123881730 123882690 -73312742 + L1VL4 LINE L1 191 1163 -2396 7 1530 3855 95 13 3 chr1 123882688 123883289 -73312143 + L1VL4 LINE L1 2953 3559 0 7 1530 287 332 50 58 chr1 123883501 123883741 -73311691 - ORR1D2 LTR MaLR -3 367 130 7 1530 510 299 40 6 chr1 123883742 123883917 -73311515 + B3A SINE B2 2 182 -16 7 1530 313 241 0 0 chr1 123883976 123884059 -73311373 + Lx9 LINE L1 7407 7489 -155 7 1530 237 320 0 0 chr1 123884626 123884701 -73310731 + L1M4c LINE L1 306 380 -6004 7 1530 231 230 107 13 chr1 123884701 123884776 -73310656 + MTD LTR MaLR 299 380 -39 7 1530 1004 335 21 27 chr1 123884786 123885117 -73310315 - MTD LTR MaLR -85 334 6 7 1530 641 300 121 53 chr1 123885464 123885854 -73309578 + MTD LTR MaLR 6 379 0 7 1530 611 330 5 20 chr1 123886239 123886434 -73308998 - B3A SINE B2 -5 193 2 7 1530 306 0 0 0 chr1 123886624 123886658 -73308774 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1530 803 320 14 9 chr1 123886748 123886959 -73308473 - B4 SINE B4 -80 212 1 7 1530 3785 142 59 0 chr1 123888441 123889004 -73306428 + Lx4A LINE L1 6463 7058 0 7 1530 327 188 32 86 chr1 123889089 123889182 -73306250 - B4 SINE B4 -8 284 197 7 1530 332 266 17 52 chr1 123889390 123889505 -73305927 + B4A SINE B4 6 116 -176 7 1530 587 299 59 22 chr1 123889476 123889698 -73305734 + B4A SINE B4 24 253 -39 7 1530 209 182 18 35 chr1 123891102 123891159 -73304273 + CT-rich Low_complexity Low_complexity 3 58 0 7 1530 262 306 177 18 chr1 123891545 123891771 -73303661 - MLT1D LTR MaLR -230 275 14 7 1530 372 243 37 55 chr1 123892022 123892131 -73303301 + PB1D7 SINE Alu 1 107 -13 7 1530 1021 37 15 0 chr1 123892131 123892265 -73303167 + (GAA)n Simple_repeat Simple_repeat 1 136 0 7 1530 312 70 0 0 chr1 123892270 123892313 -73303119 + (GGA)n Simple_repeat Simple_repeat 1 43 0 7 1530 224 227 0 94 chr1 123892401 123892493 -73302939 - MIRm SINE MIR -121 147 65 7 1530 189 74 0 0 chr1 123892772 123892799 -73302633 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1530 1114 58 0 81 chr1 123892799 123892948 -73302484 - B1_Mm SINE Alu -9 138 2 7 1530 507 101 0 0 chr1 123893726 123893805 -73301627 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1530 847 326 7 40 chr1 123893832 123894017 -73301415 - B4 SINE B4 -24 268 85 7 1530 636 67 0 55 chr1 123894017 123894127 -73301305 - L1Md_F2 LINE L1 -8 6574 6471 7 1530 847 326 7 40 chr1 123894127 123894213 -73301219 - B4 SINE B4 -208 84 7 7 1530 370 326 7 0 chr1 123894676 123894813 -73300619 - L1_Mur3 LINE L1 -527 5641 5502 7 1530 1320 209 111 16 chr1 123894818 123895125 -73300307 + ORR1D1 LTR MaLR 3 338 -36 7 1530 658 329 56 0 chr1 123895150 123895602 -73299830 - L1_Mur3 LINE L1 -444 5436 4986 7 1530 619 293 108 48 chr1 123895604 123895958 -73299474 + L1MA4 LINE L1 5637 6002 -1694 7 1530 1137 139 41 51 chr1 123896029 123896226 -73299206 + B2_Mm2 SINE B2 1 195 0 7 1530 608 273 8 8 chr1 123896990 123897119 -73298313 + B3A SINE B2 20 148 -50 7 1530 434 61 0 15 chr1 123897119 123897186 -73298246 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1530 402 21 0 0 chr1 123897194 123897241 -73298191 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1530 371 309 21 0 chr1 123897404 123897501 -73297931 - RMER15 LTR ERVL -105 470 372 7 1530 527 309 0 124 chr1 123897654 123897872 -73297560 - B4A SINE B4 -74 218 28 7 1530 658 331 29 19 chr1 123897882 123898196 -73297236 - L1ME1 LINE L1 -52 6127 5811 7 1530 838 250 56 159 chr1 123898204 123898655 -73296777 - MTE2b LTR MaLR -1 378 6 7 1530 508 261 96 0 chr1 123898713 123898912 -73296520 - L1ME1 LINE L1 -408 5754 5538 7 1530 414 318 52 86 chr1 123898949 123899159 -73296273 + ORR1E LTR MaLR 1 203 -171 7 1530 1070 250 74 30 chr1 123899326 123899664 -73295768 - MTE2a LTR MaLR -14 365 13 7 1530 537 262 206 0 chr1 123899705 123899846 -73295586 - ID_B1 SINE B4 -15 209 40 7 1530 509 200 72 29 chr1 123900103 123900242 -73295190 - RMER1C Other Other 0 1342 1198 7 1530 46 33 0 0 chr1 123900522 123900582 -73294850 + AT_rich Low_complexity Low_complexity 1 60 0 7 1530 617 292 15 0 chr1 123900628 123900765 -73294667 - RSINE1 SINE B4 -15 150 12 7 1530 312 267 111 0 chr1 123900912 123901002 -73294430 + PB1D10 SINE Alu 1 100 -17 7 1530 441 292 204 41 chr1 123901116 123901427 -73294005 - MTD LTR MaLR -31 388 18 7 1530 736 265 13 87 chr1 123901801 123902032 -73293400 + ID_B1 SINE B4 4 217 -7 7 1530 665 300 0 7 chr1 123902041 123902192 -73293240 + RSINE1 SINE B4 2 151 -14 7 1530 22 0 0 0 chr1 123902192 123902214 -73293218 + AT_rich Low_complexity Low_complexity 1 22 0 8 1530 457 287 9 18 chr1 123903241 123903351 -73292081 + RSINE1 SINE B4 38 146 -19 8 1530 375 23 0 0 chr1 123903538 123903582 -73291850 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1530 1090 224 97 4 chr1 123903588 123903826 -73291606 - B4 SINE B4 -28 264 5 8 1530 390 305 128 42 chr1 123903825 123904178 -73291254 + MLT1C LTR MaLR 71 453 -14 8 1530 1939 49 81 8 chr1 123904209 123904456 -73290976 - L1Md_F3 LINE L1 -2 6582 6318 8 1530 844 247 16 21 chr1 123904456 123904646 -73290786 - B3A SINE B2 -8 190 2 8 1530 619 219 76 0 chr1 123904932 123905051 -73290381 + RSINE1 SINE B4 4 131 -34 8 1530 333 0 0 0 chr1 123905064 123905101 -73290331 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1530 1601 244 27 8 chr1 123905854 123906221 -73289211 - MTEa LTR MaLR -3 376 3 8 1530 917 128 13 0 chr1 123906405 123906561 -73288871 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 8 1530 245 214 71 0 chr1 123906569 123906639 -73288793 - L1M2 LINE L1 -3324 2819 2745 8 1530 22 88 0 0 chr1 123906886 123906943 -73288489 + AT_rich Low_complexity Low_complexity 1 57 0 8 1530 6030 90 22 12 chr1 123907841 123908419 -73287013 - L1VL2 LINE L1 -1768 1847 1256 8 1530 5263 88 75 81 chr1 123908419 123908765 -73286667 + RMER17D LTR ERVK 1 353 -536 8 1530 498 33 0 0 chr1 123908765 123908825 -73286607 + (TCCCC)n Simple_repeat Simple_repeat 3 62 0 8 1530 5263 88 75 81 chr1 123908825 123909370 -73286062 + RMER17D LTR ERVK 354 887 -2 8 1530 6030 89 135 3 chr1 123909370 123910228 -73285204 - L1VL2 LINE L1 -2360 1255 290 8 1530 645 195 131 77 chr1 123910254 123910437 -73284995 - B3A SINE B2 -4 194 2 8 1530 207 69 0 0 chr1 123910447 123910476 -73284956 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1530 579 15 0 0 chr1 123911067 123911135 -73284297 + (TC)n Simple_repeat Simple_repeat 2 69 0 8 1530 471 35 0 0 chr1 123911135 123911191 -73284241 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1530 591 314 1 39 chr1 123911234 123911392 -73284040 - B4 SINE B4 -55 237 82 8 1530 210 37 0 0 chr1 123911392 123911419 -73284013 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1530 317 364 101 48 chr1 123911419 123911486 -73283946 - ID SINE ID -143 81 1 8 1530 714 96 0 0 chr1 123912233 123912337 -73283095 + (TCC)n Simple_repeat Simple_repeat 3 106 0 8 1530 245 323 136 24 chr1 123912436 123912642 -73282790 - Lx8 LINE L1 -322 7151 6923 8 1530 331 114 0 125 chr1 123912676 123912756 -73282676 - Lx2A LINE L1 -9 6999 6930 8 1530 1501 134 35 0 chr1 123912756 123913017 -73282415 - Lx2A LINE L1 -32 6976 6707 8 1530 2388 141 5 20 chr1 123913014 123913412 -73282020 - Lx2A LINE L1 -483 6525 6134 8 1530 7751 65 6 4 chr1 123913404 123914385 -73281047 - L1Md_F2 LINE L1 0 6582 5600 8 1530 3766 131 32 0 chr1 123914385 123915064 -73280368 - Lx2A LINE L1 -856 6152 5450 8 1530 22 0 0 0 chr1 123915064 123915086 -73280346 + AT_rich Low_complexity Low_complexity 1 22 0 8 1530 6979 77 4 13 chr1 123915086 123916229 -73279203 - L1Md_F2 LINE L1 -1 6581 5172 8 1530 849 29 0 0 chr1 123916432 123916536 -73278896 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 1530 900 326 42 4 chr1 123916550 123916812 -73278620 + B4A SINE B4 9 280 -12 8 1530 622 264 37 0 chr1 123917287 123917458 -73277974 - MTE2a LTR MaLR -3 376 194 8 1530 1536 180 17 34 chr1 123917592 123918034 -73277398 + RMER17C LTR ERVK 20 428 -530 8 1530 660 315 79 30 chr1 123918431 123918696 -73276736 - B4 SINE B4 -12 280 3 8 1530 427 300 0 0 chr1 123919688 123919788 -73275644 + B3A SINE B2 1 100 -98 8 1530 299 186 37 49 chr1 123920053 123920217 -73275215 + CT-rich Low_complexity Low_complexity 4 165 0 8 1530 841 198 18 54 chr1 123920400 123920624 -73274808 - L1_Mur3 LINE L1 -6609 1103 888 8 1530 276 30 0 0 chr1 123921320 123921353 -73274079 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 8 1530 486 0 0 0 chr1 123921633 123921687 -73273745 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1530 274 312 17 35 chr1 123921787 123921903 -73273529 + CT-rich Low_complexity Low_complexity 3 116 0 8 1530 1444 196 62 7 chr1 123924148 123924440 -73270992 - MTEb LTR MaLR -5 374 67 8 1530 466 328 95 11 chr1 123924468 123924647 -73270785 + MER63A DNA AcHobo 17 210 0 8 1530 405 54 0 0 chr1 123924798 123924854 -73270578 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 8 1530 282 29 0 0 chr1 123925965 123926000 -73269432 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1530 535 218 54 64 chr1 123927257 123927389 -73268043 + B1F2 SINE Alu 2 138 -11 8 1530 317 43 0 21 chr1 123927389 123927437 -73267995 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1530 535 205 50 67 chr1 123927437 123927450 -73267982 + B1F2 SINE Alu 139 149 0 8 1530 661 301 71 13 chr1 123927850 123928089 -73267343 - MT2A LTR ERVL -2 531 279 8 1530 40471 33 3 6 chr1 123928111 123934506 -73260926 - L1Md_T LINE L1 0 6582 210 8 1530 272 297 116 55 chr1 123934529 123934675 -73260757 - MT2A LTR ERVL -316 217 63 8 1530 298 278 42 58 chr1 123934598 123934760 -73260672 - MTE2a LTR MaLR -260 159 6 8 1530 23 0 0 0 chr1 123934760 123934783 -73260649 + AT_rich Low_complexity Low_complexity 1 23 0 8 1530 311 362 92 60 chr1 123935522 123935857 -73259575 + HAL1 LINE L1 1453 1798 -709 8 1530 377 20 20 0 chr1 123936158 123936208 -73259224 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1530 761 282 84 6 chr1 123936256 123936482 -73258950 - B4 SINE B4 -46 246 1 8 1530 191 343 0 14 chr1 123936530 123936601 -73258831 + MIR3 SINE MIR 115 184 -24 8 1530 1274 285 65 34 chr1 123936823 123937389 -73258043 + Lx8 LINE L1 6888 7471 -2 8 1530 29 0 0 0 chr1 123937389 123937418 -73258014 + AT_rich Low_complexity Low_complexity 1 29 0 8 1530 3084 212 35 6 chr1 123937447 123938077 -73257355 + Lx5 LINE L1 6027 6674 -376 8 1530 5355 129 56 25 chr1 123938077 123938509 -73256923 - RMER17B LTR ERVK 0 958 490 8 1530 1822 23 28 0 chr1 123938509 123938723 -73256709 + L1Md_F2 LINE L1 6361 6580 -2 8 1530 5355 129 56 25 chr1 123938723 123939219 -73256213 - RMER17B LTR ERVK -469 489 1 8 1530 1629 223 42 6 chr1 123939227 123939588 -73255844 + Lx5 LINE L1 6677 7050 0 8 1530 580 250 22 22 chr1 123940689 123940824 -73254608 + B1_Mur1 SINE Alu 1 135 -14 8 1530 298 306 24 32 chr1 123941000 123941125 -73254307 + MLT1A1 LTR MaLR 16 139 -269 8 1530 29 28 0 0 chr1 123941745 123941781 -73253651 + AT_rich Low_complexity Low_complexity 1 36 0 8 1530 577 312 82 10 chr1 123941814 123942105 -73253327 - Lx8 LINE L1 -8 7465 7154 8 1530 7929 31 0 9 chr1 123942495 123943383 -73252049 + L1Md_T LINE L1 5702 6581 -1 8 1530 381 235 0 0 chr1 123943414 123943495 -73251937 - B1_Mus1 SINE Alu -58 90 10 8 1530 245 300 66 57 chr1 123943415 123943521 -73251911 - B4 SINE B4 -113 179 73 8 1530 408 88 0 0 chr1 123943586 123943643 -73251789 + (T)n Simple_repeat Simple_repeat 1 57 0 8 1530 1289 54 0 0 chr1 123943643 123943790 -73251642 - B1_Mm SINE Alu 0 147 1 8 1530 418 275 103 48 chr1 123943985 123944111 -73251321 + ID_B1 SINE B4 86 218 -6 8 1530 226 350 0 8 chr1 123944422 123944540 -73250892 + (TG)n Simple_repeat Simple_repeat 1 117 0 8 1530 260 247 38 38 chr1 123944721 123944801 -73250631 - B4 SINE B4 -211 81 2 8 1530 225 288 15 0 chr1 123945553 123945619 -73249813 + ID4_ SINE ID 1 67 -16 8 1530 1232 205 37 24 chr1 123945645 123945940 -73249492 + RMER5 LTR ERV1 8 306 -228 8 1530 875 201 40 17 chr1 123945949 123946126 -73249306 + ORR1C2 LTR MaLR 2 182 -202 8 1530 507 139 0 0 chr1 123946129 123946230 -73249202 + (TC)n Simple_repeat Simple_repeat 2 102 0 8 1530 506 165 10 0 chr1 123946286 123946389 -73249043 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 1530 794 200 141 0 chr1 123946389 123946515 -73248917 + ORR1C2 LTR MaLR 174 310 -74 8 1530 327 25 0 0 chr1 123946515 123946555 -73248877 + (TTA)n Simple_repeat Simple_repeat 1 40 0 8 1530 794 200 141 0 chr1 123946555 123946613 -73248819 + ORR1C2 LTR MaLR 311 383 -1 8 1530 3737 32 7 0 chr1 123946619 123947052 -73248380 + RLTR10C LTR ERVK 1 436 0 8 1530 404 255 126 14 chr1 123947055 123947198 -73248234 + RMER5 LTR ERV1 314 472 -62 8 1530 342 259 43 8 chr1 123947450 123947567 -73247865 + Lx8 LINE L1 6698 6818 -655 8 1530 506 273 78 47 chr1 123947677 123947869 -73247563 + MER2 DNA MER2_type 124 321 -24 8 1530 735 228 153 98 chr1 123947880 123948239 -73247193 + MTEb LTR MaLR 1 379 0 8 1530 484 321 12 24 chr1 123948525 123948691 -73246741 - RSINE1 SINE B4 0 165 2 8 1530 737 273 57 89 chr1 123949182 123949463 -73245969 + MT2A LTR ERVL 262 533 0 8 1530 549 0 0 0 chr1 123949791 123949852 -73245580 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 1530 201 39 0 0 chr1 123949852 123949877 -73245555 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1530 253 325 58 111 chr1 123949916 123950106 -73245326 - B4 SINE B4 -65 227 48 8 1530 408 40 0 0 chr1 123951432 123951482 -73243950 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1530 937 38 0 8 chr1 123951519 123951651 -73243781 - L1Md_F2 LINE L1 -2 6580 6450 8 1530 194 61 19 58 chr1 123951694 123951746 -73243686 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 8 1530 252 86 0 0 chr1 123952100 123952135 -73243297 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1530 384 351 26 0 chr1 123952154 123952308 -73243124 - RSINE1 SINE B4 -5 160 3 8 1530 424 175 0 20 chr1 123952466 123952565 -73242867 + (TA)n Simple_repeat Simple_repeat 1 97 0 8 1530 409 339 17 17 chr1 123952565 123952685 -73242747 + ID_B1 SINE B4 5 124 -100 8 1530 953 248 132 12 chr1 123952697 123953016 -73242416 + ORR1D2 LTR MaLR 14 370 0 8 1530 311 351 73 36 chr1 123953458 123953650 -73241782 + MIRb SINE MIR 69 267 -1 8 1530 2367 56 0 7 chr1 123953970 123954277 -73241155 - L1_Mm LINE L1 -202 5681 5377 8 1530 1282 24 30 0 chr1 123954277 123954445 -73240987 + L1Md_F3 LINE L1 6410 6582 -2 8 1530 505 322 37 64 chr1 123954525 123954798 -73240634 + B4A SINE B4 2 282 -10 8 1530 245 240 13 13 chr1 123955158 123955234 -73240198 - L1M5 LINE L1 -963 5381 5306 8 1530 388 282 1 24 chr1 123955267 123955418 -73240014 - L1M5 LINE L1 -2310 3836 3689 8 1530 21 0 0 0 chr1 123955418 123955439 -73239993 + AT_rich Low_complexity Low_complexity 1 21 0 8 1530 2104 188 50 0 chr1 123955464 123955841 -73239591 - MT2A LTR ERVL -8 525 130 8 1530 3565 27 2 0 chr1 123955843 123956282 -73239150 - L1Md_F3 LINE L1 -243 6341 5902 9 1530 1772 50 29 4 chr1 123956282 123956521 -73238911 + L1Md_F3 LINE L1 6338 6582 -2 9 1530 666 226 29 0 chr1 123956530 123956667 -73238765 - MT2A LTR ERVL -392 141 1 8 1530 383 319 67 0 chr1 123956697 123956832 -73238600 - B1F1 SINE Alu 0 149 6 9 1530 352 307 80 29 chr1 123956885 123957197 -73238235 - L1MC LINE L1 -2557 3589 3262 9 1530 807 264 5 28 chr1 123957372 123957590 -73237842 - B3 SINE B2 -3 213 1 9 1530 468 210 15 11 chr1 123957612 123957877 -73237555 + (TG)n Simple_repeat Simple_repeat 1 266 0 9 1530 216 111 0 0 chr1 123957936 123957972 -73237460 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1530 821 253 91 10 chr1 123958134 123958430 -73237002 + Lx8 LINE L1 6918 7237 -236 9 1530 25 0 0 0 chr1 123958457 123958482 -73236950 + AT_rich Low_complexity Low_complexity 1 25 0 9 1530 372 59 0 0 chr1 123959008 123959059 -73236373 + (CCA)n Simple_repeat Simple_repeat 2 52 0 9 1530 786 281 56 0 chr1 123959084 123959280 -73236152 - ID_B1 SINE B4 -17 207 1 9 1530 12320 5 1 0 chr1 123959746 123961894 -73233538 - L1Md_A LINE L1 0 6582 4432 9 1530 551 64 0 0 chr1 123961884 123961962 -73233470 + L1_Mm LINE L1 5245 5322 -561 9 1530 692 303 16 42 chr1 123961964 123962157 -73233275 - B3 SINE B2 -28 188 1 9 1530 1146 299 38 16 chr1 123962435 123962806 -73232626 + MTEa LTR MaLR 1 379 0 9 1530 362 352 58 44 chr1 123962806 123963001 -73232431 + MER2 DNA MER2_type 147 344 -1 9 1530 343 307 148 0 chr1 123963260 123963361 -73232071 + B4A SINE B4 1 116 -176 9 1530 408 40 0 0 chr1 123963517 123963567 -73231865 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1530 183 42 0 0 chr1 123963703 123963727 -73231705 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1530 264 341 45 53 chr1 123963797 123963812 -73231620 - B1_Mur3 SINE Alu -6 143 130 9 1530 189 0 0 0 chr1 123963812 123963833 -73231599 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 9 1530 264 341 45 53 chr1 123963833 123963950 -73231482 - B1_Mur3 SINE Alu -20 129 12 9 1530 797 260 59 15 chr1 123963834 123964037 -73231395 - ID_B1 SINE B4 -7 217 6 9 1530 310 230 27 0 chr1 123964416 123964490 -73230942 - MER103 DNA DNA -89 77 2 9 1530 1629 305 58 11 chr1 123965524 123966181 -73229251 - Lx8 LINE L1 -363 7110 6423 9 1530 612 311 128 15 chr1 123966217 123966491 -73228941 + ORR1E LTR MaLR 3 307 -52 9 1530 299 266 0 0 chr1 123966532 123966596 -73228836 + ORR1E LTR MaLR 296 359 0 9 1530 1170 274 80 20 chr1 123967620 123967970 -73227462 - MTEa LTR MaLR -8 371 1 9 1530 549 0 0 0 chr1 123968138 123968199 -73227233 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 9 1530 5806 124 10 2 chr1 123968199 123969099 -73226333 - Lx3A LINE L1 -11 6970 6064 9 1530 1547 120 8 19 chr1 123969099 123969362 -73226070 + Lx3A LINE L1 5776 6035 -946 9 1530 3504 25 0 0 chr1 123969538 123969934 -73225498 + MTA_Mm LTR MaLR 1 396 0 9 1530 471 35 0 0 chr1 123970040 123970097 -73225335 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 9 1530 492 316 64 6 chr1 123970108 123970132 -73225300 - B3A SINE B2 -16 182 159 9 1530 342 0 0 0 chr1 123970132 123970170 -73225262 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1530 492 316 64 6 chr1 123970170 123970317 -73225115 - B3A SINE B2 -40 158 3 9 1530 34 24 0 0 chr1 123970550 123970591 -73224841 + AT_rich Low_complexity Low_complexity 1 41 0 9 1530 2789 93 21 9 chr1 123970591 123971014 -73224418 - Lx3_Mus LINE L1 0 7009 6582 9 1530 1087 116 11 23 chr1 123971303 123971479 -73223953 - B2_Mm2 SINE B2 -19 176 3 9 1530 1031 96 7 0 chr1 123972009 123972145 -73223287 + B1_Mus1 SINE Alu 2 138 -10 9 1530 235 72 0 45 chr1 123972272 123972316 -73223116 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9 1530 706 254 19 63 chr1 123972321 123972527 -73222905 + B3A SINE B2 1 197 -1 9 1530 24 0 0 0 chr1 123972528 123972552 -73222880 + AT_rich Low_complexity Low_complexity 1 24 0 9 1530 363 217 31 42 chr1 123973452 123973548 -73221884 - RMER15 LTR ERVL -478 97 3 9 1530 296 371 47 56 chr1 123974743 123974977 -73220455 + B4A SINE B4 1 232 -60 9 1530 552 324 96 105 chr1 123975146 123975574 -73219858 - LTR16A1 LTR ERVL -30 426 3 9 1530 565 314 16 47 chr1 123975582 123975762 -73219670 + B3A SINE B2 1 166 -29 9 1530 354 45 0 0 chr1 123975762 123975806 -73219626 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1530 244 330 33 126 chr1 123975806 123975840 -73219592 + B2_Mm2 SINE B2 167 195 0 9 1530 1405 231 39 19 chr1 123976442 123976804 -73218628 + ORR1D2 LTR MaLR 2 370 0 9 1530 747 354 106 5 chr1 123976874 123977308 -73218124 + Lx8 LINE L1 6864 7341 -132 9 1530 383 174 17 17 chr1 123977382 123977499 -73217933 + (TA)n Simple_repeat Simple_repeat 1 117 0 9 1530 396 59 0 0 chr1 123977533 123977584 -73217848 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 1530 219 69 0 0 chr1 123977591 123977620 -73217812 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1530 300 282 26 0 chr1 123978006 123978084 -73217348 + RSINE1 SINE B4 3 82 -83 9 1530 677 264 69 32 chr1 123978865 123979057 -73216375 - B3A SINE B2 -22 194 10 9 1530 823 323 47 13 chr1 123979663 123979898 -73215534 - B4 SINE B4 0 292 50 9 1530 202 51 50 25 chr1 123980322 123980362 -73215070 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 9 1530 25 0 0 0 chr1 123980404 123980429 -73215003 + AT_rich Low_complexity Low_complexity 1 25 0 9 1530 401 303 169 24 chr1 123980537 123980750 -73214682 + RMER15 LTR ERVL 275 518 -57 9 1530 329 264 57 11 chr1 123980784 123980872 -73214560 - PB1D10 SINE Alu -25 92 1 9 1530 282 376 52 32 chr1 123981506 123981660 -73213772 - B4A SINE B4 -4 288 132 9 1530 579 261 14 7 chr1 123981785 123981924 -73213508 + B4 SINE B4 2 141 -151 9 1530 615 284 74 125 chr1 123981932 123982316 -73213116 + MTEa LTR MaLR 18 407 -14 9 1530 481 324 44 0 chr1 123982318 123982454 -73212978 + B4A SINE B4 128 269 -23 9 1530 297 0 0 0 chr1 123982455 123982488 -73212944 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1530 363 78 0 0 chr1 123982518 123982569 -73212863 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1530 33938 35 1 0 chr1 123982996 123988641 -73206791 + L1Md_T LINE L1 1 5589 -297 9 1530 9038 5 0 0 chr1 123988641 123989637 -73205795 + L1Md_T LINE L1 5590 6585 0 9 1530 36 77 0 0 chr1 123989976 123990054 -73205378 + AT_rich Low_complexity Low_complexity 1 78 0 9 1530 523 81 11 11 chr1 123990060 123990147 -73205285 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1530 774 316 38 0 chr1 123990147 123990356 -73205076 - B4A SINE B4 -23 269 53 9 1530 477 34 0 0 chr1 123990773 123990832 -73204600 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1530 859 289 25 82 chr1 123990838 123991117 -73204315 - B4A SINE B4 -27 265 3 9 1530 5106 87 51 23 chr1 123991149 123991928 -73203504 + L1_Mus3 LINE L1 5836 6636 -2 9 1530 186 133 0 0 chr1 123992373 123992403 -73203029 + (TTC)n Simple_repeat Simple_repeat 3 32 0 9 1530 1017 251 76 132 chr1 123992777 123992946 -73202486 + ORR1E LTR MaLR 1 164 -195 9 1530 865 83 8 8 chr1 123992946 123993079 -73202353 + (TTCTC)n Simple_repeat Simple_repeat 3 135 0 9 1530 1191 112 0 0 chr1 123993080 123993259 -73202173 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 9 1530 1017 251 76 132 chr1 123993259 123993467 -73201965 + ORR1E LTR MaLR 165 359 0 9 1531 359 295 71 0 chr1 123994370 123994482 -73200950 + B4A SINE B4 2 121 -171 9 1531 291 315 11 32 chr1 123994558 123994653 -73200779 + RSINE1 SINE B4 73 165 0 9 1531 554 95 11 0 chr1 123994656 123994751 -73200681 + (GA)n Simple_repeat Simple_repeat 2 97 0 9 1531 451 308 56 7 chr1 123995128 123995272 -73200160 + B4A SINE B4 132 282 -10 9 1531 279 0 0 0 chr1 123995421 123995452 -73199980 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1531 546 89 0 0 chr1 123995452 123995542 -73199890 + (GA)n Simple_repeat Simple_repeat 2 91 0 9 1531 277 339 6 18 chr1 123995709 123995880 -73199552 + L1MD3 LINE L1 7733 7901 -94 9 1531 545 244 153 0 chr1 123996054 123996185 -73199247 + B3A SINE B2 1 151 -47 9 1531 1697 138 52 62 chr1 123996321 123996645 -73198787 - ORR1A4 LTR MaLR -8 321 1 9 1531 309 26 0 0 chr1 123996791 123996829 -73198603 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1531 701 342 18 40 chr1 123996829 123997024 -73198408 - B4A SINE B4 -23 269 77 9 1531 474 108 0 0 chr1 123997024 123997098 -73198334 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1531 701 342 18 40 chr1 123997098 123997176 -73198256 - B4A SINE B4 -216 76 2 9 1531 642 120 8 71 chr1 123997608 123997734 -73197698 + B1_Mur4 SINE Alu 33 150 0 9 1531 721 280 125 63 chr1 123997782 123998133 -73197299 + MTE2a LTR MaLR 6 378 -1 9 1531 677 278 127 39 chr1 123998190 123998522 -73196910 + MTD LTR MaLR 1 398 -23 9 1531 284 325 91 67 chr1 123998529 123998737 -73196695 + ORR1D2 LTR MaLR 6 218 -152 9 1531 226 261 0 68 chr1 123998884 123998958 -73196474 - MER53 DNA hAT 0 193 125 9 1531 863 299 69 12 chr1 123999509 123999844 -73195588 - ORR1E LTR MaLR -2 357 4 9 1531 319 211 27 27 chr1 124000609 124000682 -73194750 + B4 SINE B4 1 73 -219 1 1531 200 97 32 0 chr1 124000687 124000718 -73194714 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 2 1531 705 169 0 0 chr1 124001285 124001421 -73194011 + CT-rich Low_complexity Low_complexity 3 138 0 3 1531 287 349 130 25 chr1 124001884 124002199 -73193233 - L2 LINE L2 -345 3074 2727 4 1531 1173 266 92 20 chr1 124002247 124002689 -73192743 - RMER15 LTR ERVL -5 570 1 5 1531 271 332 29 91 chr1 124002690 124002932 -73192500 - L2 LINE L2 -764 2655 2429 4 1531 368 237 43 9 chr1 124002975 124003090 -73192342 + Lx7 LINE L1 7578 7696 0 6 1531 197 180 20 0 chr1 124003710 124003760 -73191672 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1531 4931 56 41 30 chr1 124004006 124004664 -73190768 - L1_Mus2 LINE L1 -1 6565 5901 8 1531 3443 70 0 0 chr1 124004664 124005214 -73190218 + L1_Mus2 LINE L1 5392 5941 -625 8 1531 1313 262 29 36 chr1 124005221 124005577 -73189855 - ORR1E LTR MaLR 0 421 4 9 1531 309 365 92 22 chr1 124005613 124005798 -73189634 - LTR31 LTR ERV1 -12 607 410 1 1531 180 0 0 0 chr1 124005811 124005831 -73189601 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1 1531 276 365 26 9 chr1 124005838 124005954 -73189478 - MER72B LTR ERV1 -241 527 410 1 1531 983 276 61 11 chr1 124006185 124006463 -73188969 - B4 SINE B4 0 292 1 1 1531 328 278 10 10 chr1 124006608 124006706 -73188726 - MER58D DNA MER1_type -5 381 284 1 1531 519 259 119 79 chr1 124006739 124007016 -73188416 + B4 SINE B4 5 292 0 1 1531 192 182 0 0 chr1 124007030 124007074 -73188358 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1531 626 295 11 17 chr1 124007450 124007470 -73187962 - B3A SINE B2 -22 176 158 1 1531 1150 261 50 22 chr1 124007470 124007830 -73187602 + ORR1D2 LTR MaLR 1 370 0 1 1531 626 295 11 17 chr1 124007830 124007985 -73187447 - B3A SINE B2 -41 157 2 1 1531 683 312 0 11 chr1 124008115 124008290 -73187142 + B3A SINE B2 1 173 -25 1 1531 417 95 0 0 chr1 124008295 124008358 -73187074 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1531 28 0 0 0 chr1 124009310 124009338 -73186094 + AT_rich Low_complexity Low_complexity 1 28 0 2 1531 826 223 0 0 chr1 124009969 124010108 -73185324 - B1_Mur2 SINE Alu -10 139 1 2 1531 315 130 0 0 chr1 124010559 124010613 -73184819 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1531 344 368 98 0 chr1 124010621 124010754 -73184678 - RSINE1 SINE B4 -14 151 6 2 1531 578 268 30 18 chr1 124011164 124011331 -73184101 - ORR1E LTR MaLR -7 372 204 2 1531 961 311 31 4 chr1 124011358 124011613 -73183819 + B4A SINE B4 9 270 -22 2 1531 312 91 0 0 chr1 124011613 124011657 -73183775 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1531 279 250 0 0 chr1 124011698 124011782 -73183650 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2 1531 686 284 24 42 chr1 124011794 124012007 -73183425 - ORR1E LTR MaLR -150 209 1 2 1531 210 292 156 74 chr1 124012031 124012153 -73183279 - MIRm SINE MIR -128 148 17 2 1531 267 54 0 0 chr1 124013046 124013083 -73182349 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1531 6566 199 33 9 chr1 124013117 124013811 -73181621 - Lx5 LINE L1 -39 7011 6316 3 1531 351 0 0 0 chr1 124013811 124013850 -73181582 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1531 6566 170 49 6 chr1 124013850 124014961 -73180471 - Lx5 LINE L1 -735 6315 5130 3 1531 2889 153 32 24 chr1 124014964 124015554 -73179878 + Lx5 LINE L1 4535 5129 -748 3 1531 2474 133 0 43 chr1 124015619 124016036 -73179396 - Lx3B LINE L1 -2 6971 6573 3 1531 897 223 210 3 chr1 124016241 124016551 -73178881 - ORR1D1 LTR MaLR 0 374 1 3 1531 404 291 54 88 chr1 124016606 124016903 -73178529 + L1M2 LINE L1 5417 5703 -588 3 1531 477 298 79 0 chr1 124016964 124017078 -73178354 - RSINE1 SINE B4 -34 131 9 3 1531 266 268 31 0 chr1 124017096 124017193 -73178239 + L1M2 LINE L1 5701 5800 -491 3 1531 441 36 0 0 chr1 124017659 124017714 -73177718 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1531 436 356 80 27 chr1 124017757 124017982 -73177450 - B4A SINE B4 -9 283 47 3 1531 745 271 80 56 chr1 124018670 124018836 -73176596 + B4A SINE B4 37 208 -84 3 1531 717 277 132 37 chr1 124018836 124019027 -73176405 - ORR1E LTR MaLR -2 357 138 4 1531 351 0 0 0 chr1 124019027 124019066 -73176366 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1531 717 277 132 37 chr1 124019066 124019200 -73176232 - ORR1E LTR MaLR -222 137 1 4 1531 745 271 80 56 chr1 124019200 124019283 -73176149 + B4A SINE B4 209 292 0 3 1531 417 20 0 0 chr1 124019285 124019335 -73176097 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1531 500 244 91 8 chr1 124019423 124019555 -73175877 + RSINE1 SINE B4 7 149 -16 4 1531 199 73 48 24 chr1 124019957 124019999 -73175433 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 4 1531 678 25 0 0 chr1 124020000 124020080 -73175352 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 1531 879 273 91 0 chr1 124020083 124020336 -73175096 - B4A SINE B4 -16 276 1 4 1531 390 21 0 0 chr1 124021396 124021443 -73173989 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1531 8770 125 14 6 chr1 124021553 124023100 -73172332 - Lx2 LINE L1 -5 6992 5429 4 1531 3774 161 27 7 chr1 124023100 124023168 -73172264 + L1_Mur2 LINE L1 4658 4727 -1150 4 1531 333 0 0 0 chr1 124023168 124023205 -73172227 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1531 3774 161 27 7 chr1 124023205 124023903 -73171529 + L1_Mur2 LINE L1 4728 5440 -437 4 1531 870 255 124 32 chr1 124023903 124024251 -73171181 - Lx8 LINE L1 -9 7464 7085 5 1531 225 306 20 0 chr1 124024257 124024355 -73171077 - L1M5 LINE L1 -274 5899 5800 5 1531 679 288 0 13 chr1 124024883 124025038 -73170394 - RSINE1 SINE B4 -10 155 3 5 1531 389 296 64 117 chr1 124025419 124025630 -73169802 - L1M5 LINE L1 -1468 4678 4488 5 1531 1041 204 36 5 chr1 124025630 124025822 -73169610 - B3A SINE B2 0 198 1 5 1531 389 296 64 117 chr1 124025822 124026046 -73169386 - L1M5 LINE L1 -1659 4487 4266 5 1531 507 307 15 35 chr1 124026324 124026523 -73168909 - ORR1E LTR MaLR -164 195 1 5 1531 273 311 180 18 chr1 124026582 124026971 -73168461 - L1MB1 LINE L1 -249 5940 5489 5 1531 638 301 24 6 chr1 124027179 124027385 -73168047 + B3A SINE B2 7 216 0 5 1531 264 30 0 0 chr1 124028252 124028285 -73167147 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 5 1531 315 308 0 46 chr1 124028507 124028616 -73166816 + RSINE1 SINE B4 28 131 -34 5 1531 3060 102 9 2 chr1 124028680 124029121 -73166311 - L1_Mus3 LINE L1 0 6638 6195 6 1531 1339 91 10 0 chr1 124029121 124029318 -73166114 + L1_Mm LINE L1 4815 5013 -870 6 1531 405 0 0 0 chr1 124030788 124030833 -73164599 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1531 395 38 0 19 chr1 124031289 124031343 -73164089 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 6 1531 630 239 28 28 chr1 124031663 124031805 -73163627 + RSINE1 SINE B4 3 144 -21 6 1531 351 44 0 0 chr1 124031808 124031853 -73163579 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1531 832 348 68 0 chr1 124032042 124032395 -73163037 + MTE2b LTR MaLR 1 377 -2 6 1531 243 0 0 0 chr1 124032489 124032516 -73162916 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1531 697 306 0 67 chr1 124032695 124032905 -73162527 - B3A SINE B2 0 198 3 6 1531 8121 29 1 0 chr1 124033653 124034648 -73160784 - L1Md_T LINE L1 0 6582 5587 6 1531 9200 23 0 0 chr1 124034679 124035803 -73159629 + L1_Mm LINE L1 4448 5571 -312 7 1531 1302 297 23 26 chr1 124035885 124036234 -73159198 - ORR1E LTR MaLR -11 348 1 7 1531 233 184 122 0 chr1 124037026 124037075 -73158357 + MTEb LTR MaLR 282 336 -43 7 1531 350 323 82 75 chr1 124037081 124037428 -73158004 - ORR1E LTR MaLR -4 370 39 7 1531 308 253 21 84 chr1 124037701 124037796 -73157636 + MT2B LTR ERVL 156 244 -357 7 1531 445 272 19 0 chr1 124037719 124037822 -73157610 + PB1D9 SINE Alu 11 115 -5 7 1531 7034 80 5 2 chr1 124038345 124039388 -73156044 + L1_Mus1 LINE L1 5521 6566 -1 7 1531 1163 254 39 90 chr1 124039477 124039772 -73155660 + MTEa LTR MaLR 9 292 -87 7 1531 800 156 36 22 chr1 124039772 124039910 -73155522 + B1_Mus2 SINE Alu 2 141 -6 7 1531 1163 254 39 90 chr1 124039910 124040004 -73155428 + MTEa LTR MaLR 293 378 -1 7 1531 331 315 116 16 chr1 124040372 124040383 -73155049 + B4 SINE B4 102 111 -181 7 1531 483 73 0 0 chr1 124040383 124040451 -73154981 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1531 572 310 100 1 chr1 124040451 124040613 -73154819 + B4A SINE B4 112 289 -3 7 1531 2923 118 209 0 chr1 124040621 124041104 -73154328 - MT2B2 LTR ERVL 0 584 1 8 1531 965 231 155 52 chr1 124041271 124041745 -73153687 - RMER4B LTR ERVK -11 574 17 8 1531 285 331 71 16 chr1 124041758 124041884 -73153548 + MIRb SINE MIR 9 144 -124 8 1531 684 342 5 15 chr1 124042449 124042648 -73152784 + B3A SINE B2 1 197 -1 8 1531 6061 82 22 6 chr1 124043335 124044231 -73151201 + Lx3_Mus LINE L1 6075 6985 -24 8 1531 231 36 0 0 chr1 124044233 124044261 -73151171 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 1531 989 256 43 153 chr1 124044302 124044648 -73150784 + MTE2b LTR MaLR 1 308 -71 8 1531 381 70 0 0 chr1 124044695 124044752 -73150680 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1531 1874 39 0 21 chr1 124044899 124045133 -73150299 + L1_Mus1 LINE L1 6337 6565 -2 8 1531 1316 81 32 5 chr1 124045664 124045850 -73149582 - B2_Mm1t SINE B2 -1 192 2 9 1531 1508 43 21 16 chr1 124045864 124046055 -73149377 - B2_Mm1t SINE B2 -1 192 1 9 1531 1007 289 51 58 chr1 124046155 124046544 -73148888 + MTE2a LTR MaLR 16 410 -9 9 1531 6233 92 12 16 chr1 124046770 124048437 -73146995 + L1VL4 LINE L1 189 1848 -1711 9 1531 6450 142 14 1 chr1 124048434 124049898 -73145534 + Lx2 LINE L1 5165 6645 -352 9 1531 1149 118 99 0 chr1 124049887 124050098 -73145334 + Lx2 LINE L1 6765 6996 -1 9 1531 23 33 0 0 chr1 124050233 124050263 -73145169 + AT_rich Low_complexity Low_complexity 1 30 0 9 1531 232 259 45 57 chr1 124051737 124051913 -73143519 + L1MC5 LINE L1 7293 7466 -495 9 1531 483 96 0 0 chr1 124052386 124052469 -73142963 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 9 1531 843 246 19 29 chr1 124052491 124052700 -73142732 + B3 SINE B2 2 208 -8 9 1531 267 31 0 0 chr1 124054257 124054289 -73141143 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1531 434 61 15 0 chr1 124054533 124054599 -73140833 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1531 234 136 0 0 chr1 124054620 124054664 -73140768 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1531 1389 236 73 13 chr1 124055495 124055890 -73139542 + Lx8 LINE L1 6923 7341 -132 1 1531 1624 257 47 78 chr1 124056028 124056159 -73139273 - Lx9 LINE L1 -4 7640 7515 1 1531 207 0 0 0 chr1 124056159 124056182 -73139250 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1531 1624 257 47 78 chr1 124056182 124056815 -73138617 - Lx9 LINE L1 -130 7514 6900 1 1531 493 55 14 14 chr1 124057180 124057254 -73138178 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1531 534 312 73 14 chr1 124057755 124057973 -73137459 - B4 SINE B4 -61 231 1 1 1531 435 270 57 8 chr1 124058050 124058182 -73137250 - B1F2 SINE Alu -7 142 6 1 1531 514 279 106 12 chr1 124058674 124058834 -73136598 + B3A SINE B2 1 175 -23 1 1531 6594 42 5 4 chr1 124059950 124060760 -73134672 + L1Md_F3 LINE L1 5759 6569 -15 1 1531 731 301 51 63 chr1 124061485 124061828 -73133604 + MTE2a LTR MaLR 20 369 -50 1 1531 182 335 171 17 chr1 124062715 124062891 -73132541 - MIRb SINE MIR -28 240 38 1 1531 198 0 0 0 chr1 124062979 124063001 -73132431 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1531 252 59 0 0 chr1 124063009 124063043 -73132389 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1531 1064 321 18 4 chr1 124063229 124063510 -73131922 - B4A SINE B4 -6 286 2 1 1531 719 288 19 9 chr1 124064119 124064329 -73131103 - ID_B1 SINE B4 -8 216 5 1 1531 918 290 45 31 chr1 124064827 124065115 -73130317 - B4A SINE B4 0 292 1 1 1531 385 326 181 0 chr1 124066194 124066338 -73129094 + B3A SINE B2 1 170 -28 1 1531 324 0 0 0 chr1 124066359 124066395 -73129037 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1531 5170 89 12 29 chr1 124066807 124067863 -73127569 + L1VL4 LINE L1 180 1231 -2328 1 1531 3720 170 24 3 chr1 124067863 124068494 -73126938 + RLTR17 LTR ERVK 1 644 -48 1 1531 12738 94 7 8 chr1 124068509 124070489 -73124943 + MusHAL1 LINE L1 735 2712 0 1 1531 1028 65 0 0 chr1 124071330 124071469 -73123963 + L1_Mus2 LINE L1 6427 6565 -1 1 1531 1159 101 36 36 chr1 124071491 124071686 -73123746 + B2_Mm2 SINE B2 1 195 0 1 1531 507 163 10 30 chr1 124071698 124071799 -73123633 + ORR1A4 LTR MaLR 1 99 -230 1 1531 28 48 0 0 chr1 124071802 124071844 -73123588 + AT_rich Low_complexity Low_complexity 1 42 0 1 1531 1020 59 0 0 chr1 124071891 124072027 -73123405 - L1_Mus2 LINE L1 -496 6070 5935 1 1531 232 135 0 0 chr1 124072045 124072082 -73123350 - ORR1A1-int LTR MaLR -1755 37 1 1 1531 405 0 0 0 chr1 124072091 124072136 -73123296 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1531 1757 60 0 0 chr1 124072136 124072370 -73123062 - L1_Mus2 LINE L1 -640 5926 5693 1 1531 3857 73 0 0 chr1 124072370 124072861 -73122571 + L1_Mus1 LINE L1 6077 6567 0 1 1531 238 172 0 0 chr1 124072865 124072929 -73122503 + MusHAL1 LINE L1 751 814 -1898 1 1531 230 105 0 26 chr1 124072939 124072978 -73122454 + ORR1A4-int LTR MaLR 1 38 -1471 1 1531 563 167 9 0 chr1 124072979 124073093 -73122339 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1531 3265 279 79 22 chr1 124073110 124074628 -73120804 + RMER1A Other Other 12 1026 -4 1 1531 328 276 11 11 chr1 124074655 124074743 -73120689 - PB1D9 SINE Alu 0 120 33 1 1531 2135 140 3 12 chr1 124075110 124075442 -73119990 + ORR1A4 LTR MaLR 1 329 0 1 1531 919 279 47 29 chr1 124075524 124075801 -73119631 - B4 SINE B4 -6 286 5 1 1531 236 336 120 24 chr1 124076133 124076258 -73119174 - LTR88c LTR Genie? -511 351 215 1 1531 233 297 0 0 chr1 124076329 124076393 -73119039 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 1 1531 193 129 42 28 chr1 124076397 124076469 -73118963 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 1 1531 65 25 0 0 chr1 124076469 124076548 -73118884 + AT_rich Low_complexity Low_complexity 1 79 0 1 1531 1049 83 7 7 chr1 124076574 124076720 -73118712 - B1_Mus2 SINE Alu 0 147 2 1 1531 22 0 0 0 chr1 124076797 124076819 -73118613 + AT_rich Low_complexity Low_complexity 1 22 0 1 1531 1311 228 123 6 chr1 124077749 124078067 -73117365 - ORR1D1 LTR MaLR -19 355 1 1 1531 436 313 87 36 chr1 124078108 124078337 -73117095 + B4A SINE B4 2 228 -64 1 1531 494 293 73 22 chr1 124078337 124078473 -73116959 + RSINE1 SINE B4 2 144 -21 1 1531 453 76 0 0 chr1 124078558 124078624 -73116808 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1531 314 200 71 48 chr1 124078983 124079067 -73116365 - LTR48 LTR ERV1 -701 86 1 1 1531 1260 243 48 4 chr1 124079238 124079561 -73115871 + MTEb LTR MaLR 1 367 -12 1 1531 360 0 0 0 chr1 124079684 124079724 -73115708 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1531 227 278 0 29 chr1 124080440 124080515 -73114917 - B1F1 SINE Alu -70 78 9 1 1531 3602 105 25 5 chr1 124081690 124082284 -73113148 + L1VL4 LINE L1 272 877 -5425 1 1531 4651 82 10 11 chr1 124082270 124083002 -73112430 + MusHAL1 LINE L1 239 969 -1743 1 1531 910 257 136 11 chr1 124083002 124083080 -73112352 - ORR1D1 LTR MaLR -36 338 251 1 1531 342 45 0 0 chr1 124083080 124083124 -73112308 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1531 910 257 136 11 chr1 124083124 124083324 -73112108 - ORR1D1 LTR MaLR -124 250 25 1 1531 5239 167 66 20 chr1 124083324 124085038 -73110394 - L1Md_F LINE L1 -3778 2105 301 1 1531 7128 183 84 16 chr1 124085059 124086795 -73108637 - L1_Mur2 LINE L1 -260 5617 3764 1 1531 207 218 18 18 chr1 124089429 124089485 -73105947 + GA-rich Low_complexity Low_complexity 1 56 0 1 1531 420 225 17 28 chr1 124089592 124089770 -73105662 + GA-rich Low_complexity Low_complexity 5 180 0 1 1531 1017 101 0 0 chr1 124090084 124090263 -73105169 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1531 207 169 29 44 chr1 124090336 124090404 -73105028 + T-rich Low_complexity Low_complexity 3 69 0 1 1531 609 68 0 0 chr1 124090404 124090492 -73104940 - 4.5SRNA scRNA scRNA -6 88 1 1 1531 249 229 81 35 chr1 124090415 124090501 -73104931 - B4A SINE B4 -125 167 78 1 1531 1450 262 59 8 chr1 124090504 124090892 -73104540 + MTD LTR MaLR 12 419 0 1 1531 279 0 0 0 chr1 124090975 124091006 -73104426 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1531 360 0 0 0 chr1 124091006 124091045 -73104387 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1531 387 0 0 0 chr1 124091045 124091087 -73104345 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1531 384 175 110 34 chr1 124092687 124092805 -73102627 - RLTR15 LTR ERVK -232 127 1 1 1531 420 372 80 53 chr1 124092805 124093069 -73102363 + B4 SINE B4 8 278 -14 1 1531 565 278 67 17 chr1 124093206 124093384 -73102048 + RMER15 LTR ERVL 292 478 -97 1 1531 1395 221 128 9 chr1 124093384 124093727 -73101705 - ORR1C2 LTR MaLR 0 384 1 1 1531 428 0 19 0 chr1 124093773 124093825 -73101607 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1531 2742 234 84 7 chr1 124093827 124094507 -73100925 - RMER19A LTR ERVK -5 732 1 1 1531 288 268 37 37 chr1 124095248 124095411 -73100021 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 1 1531 237 203 50 17 chr1 124095797 124095857 -73099575 + PB1D10 SINE Alu 47 108 -9 1 1531 23 0 0 0 chr1 124096050 124096073 -73099359 + AT_rich Low_complexity Low_complexity 1 23 0 1 1531 1577 317 109 27 chr1 124096099 124096789 -73098643 + Lx9 LINE L1 6432 7184 -460 1 1531 378 0 0 0 chr1 124096789 124096831 -73098601 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1531 1577 317 109 27 chr1 124096831 124097141 -73098291 + Lx9 LINE L1 7185 7514 -130 1 1531 395 292 7 7 chr1 124097142 124097287 -73098145 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1531 4361 63 0 0 chr1 124097455 124098027 -73097405 - L1_Mm LINE L1 -77 5806 5235 1 1531 207 0 0 0 chr1 124098040 124098063 -73097369 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1531 351 0 0 0 chr1 124098076 124098115 -73097317 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1531 5622 88 0 1 chr1 124098122 124098874 -73096558 + L1Md_F2 LINE L1 5820 6570 -12 1 1531 440 340 56 20 chr1 124098909 124099107 -73096325 + ID_B1 SINE B4 15 219 -5 1 1531 695 297 96 22 chr1 124099422 124099694 -73095738 + B4 SINE B4 1 292 0 1 1531 762 148 8 15 chr1 124100488 124100618 -73094814 + RLTR20C LTR ERVK 1 129 -412 1 1531 1244 209 12 12 chr1 124100614 124100870 -73094562 + RLTR20C LTR ERVK 278 533 -1 1 1531 200 319 12 12 chr1 124101070 124101238 -73094194 + (TA)n Simple_repeat Simple_repeat 2 169 0 1 1531 252 59 0 0 chr1 124101297 124101331 -73094101 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1531 332 269 25 6 chr1 124101364 124101521 -73093911 + (TA)n Simple_repeat Simple_repeat 1 160 0 1 1531 1958 165 113 13 chr1 124101533 124101914 -73093518 + MTC LTR MaLR 3 421 0 1 1531 1252 212 118 55 chr1 124101914 124102243 -73093189 + MTC-int LTR MaLR 14 363 -895 1 1531 1490 171 126 3 chr1 124102243 124102553 -73092879 + Lx4A LINE L1 6653 7000 -58 1 1531 3622 199 32 12 chr1 124102553 124103330 -73092102 + MTC-int LTR MaLR 386 1550 -413 1 1531 14338 151 22 12 chr1 124103350 124107254 -73088178 - Lx2 LINE L1 -1 6996 3051 1 1531 595 232 44 33 chr1 124107256 124107439 -73087993 + MTC-int LTR MaLR 1073 1257 -1 1 1531 1779 205 88 30 chr1 124107440 124107634 -73087798 + MTC LTR MaLR 1 211 -210 1 1531 2019 164 235 35 chr1 124107634 124108209 -73087223 - RMER6C LTR ERVK 0 690 1 1 1531 1779 205 88 30 chr1 124108209 124108412 -73087020 + MTC LTR MaLR 212 421 0 1 1531 501 296 111 47 chr1 124108447 124108827 -73086605 - L1MA4A LINE L1 -377 5926 5523 1 1531 1326 297 97 69 chr1 124108971 124109506 -73085926 + MLT1F2 LTR MaLR 4 553 -7 1 1531 240 146 62 0 chr1 124110697 124110745 -73084687 + (CTATT)n Simple_repeat Simple_repeat 2 52 0 1 1531 208 109 91 0 chr1 124110760 124110815 -73084617 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1531 369 43 0 0 chr1 124110820 124110867 -73084565 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1531 399 21 0 0 chr1 124110867 124110914 -73084518 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1531 432 0 0 0 chr1 124110914 124110961 -73084471 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1531 557 250 78 0 chr1 124110982 124111110 -73084322 - MT2A LTR ERVL -109 424 287 1 1531 272 326 60 50 chr1 124111774 124111966 -73083466 + B4 SINE B4 41 276 -16 1 1531 378 0 0 0 chr1 124111984 124112026 -73083406 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1531 779 244 94 126 chr1 124113233 124113699 -73081733 + RMER2 LTR ERV1 1 540 -27 2 1531 251 241 43 16 chr1 124114336 124114413 -73081019 - MLT1A0 LTR MaLR -50 324 238 2 1531 623 335 64 4 chr1 124114622 124114886 -73080546 - MLT-int LTR MaLR 0 1735 1456 2 1531 6731 100 4 7 chr1 124114916 124115932 -73079500 + L1_Mus3 LINE L1 5623 6635 -3 2 1531 229 276 54 62 chr1 124116251 124116363 -73079069 + LTR81B LTR ERV1? 136 246 -1147 2 1531 299 241 272 53 chr1 124116829 124116943 -73078489 + B3A SINE B2 2 140 -58 2 1531 1292 182 146 0 chr1 124116937 124117005 -73078427 - RLTR14 LTR ERV1 -68 314 246 2 1531 432 0 0 0 chr1 124117005 124117053 -73078379 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1531 1292 182 146 0 chr1 124117053 124117258 -73078174 - RLTR14 LTR ERV1 -137 245 3 2 1531 253 211 239 22 chr1 124117258 124117340 -73078092 + MTEb LTR MaLR 278 379 0 2 1531 252 0 0 0 chr1 124117603 124117631 -73077801 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1531 227 226 43 11 chr1 124117636 124117730 -73077702 + A-rich Low_complexity Low_complexity 4 100 0 2 1531 243 0 0 0 chr1 124117745 124117772 -73077660 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 2 1531 489 277 69 0 chr1 124118822 124118952 -73076480 + ID_B1 SINE B4 2 140 -84 2 1531 440 324 129 31 chr1 124119944 124120199 -73075233 + B4 SINE B4 2 281 -11 2 1531 970 311 46 8 chr1 124120950 124121209 -73074223 + B4A SINE B4 1 269 -23 2 1531 656 317 61 33 chr1 124121646 124122063 -73073369 + MTE2a LTR MaLR 1 399 -20 2 1531 579 311 19 122 chr1 124122481 124122686 -73072746 - B3 SINE B2 -11 184 1 2 1531 27 0 0 0 chr1 124122693 124122720 -73072712 + AT_rich Low_complexity Low_complexity 1 27 0 2 1531 477 104 0 0 chr1 124122739 124122816 -73072616 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1531 455 299 15 22 chr1 124122829 124122966 -73072466 - RSINE1 SINE B4 -22 143 8 2 1531 280 330 85 0 chr1 124123250 124123356 -73072076 - B4 SINE B4 -174 118 4 2 1531 248 0 31 0 chr1 124123420 124123452 -73071980 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 1531 832 276 0 6 chr1 124123814 124123989 -73071443 + B3A SINE B2 1 174 -24 2 1531 189 0 0 0 chr1 124123998 124124019 -73071413 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1531 2377 254 75 36 chr1 124124028 124124943 -73070489 + Lx9 LINE L1 6686 7636 -8 2 1532 351 298 47 31 chr1 124125720 124125848 -73069584 - ID_B1 SINE B4 0 224 95 2 1532 644 298 50 10 chr1 124125879 124126079 -73069353 + ID_B1 SINE B4 9 216 -8 2 1532 6651 104 34 15 chr1 124126158 124127224 -73068208 - Lx3_Mus LINE L1 -1 7008 5923 2 1532 583 299 78 0 chr1 124127861 124128028 -73067404 + B3A SINE B2 1 180 -18 2 1532 945 163 96 35 chr1 124128067 124128296 -73067136 + Lx5 LINE L1 6803 7045 -5 2 1532 24 91 0 0 chr1 124128320 124128386 -73067046 + AT_rich Low_complexity Low_complexity 1 66 0 2 1532 514 210 20 0 chr1 124128697 124128797 -73066635 - B3A SINE B2 -94 104 3 2 1532 463 286 76 24 chr1 124128993 124129283 -73066149 - L1MDa LINE L1 -4233 2400 2096 2 1532 876 128 0 0 chr1 124129310 124129489 -73065943 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 1532 21 0 0 0 chr1 124129534 124129555 -73065877 + AT_rich Low_complexity Low_complexity 1 21 0 2 1532 236 293 0 118 chr1 124129587 124129680 -73065752 - B3A SINE B2 -15 183 102 2 1532 25 31 0 0 chr1 124130029 124130061 -73065371 + AT_rich Low_complexity Low_complexity 1 32 0 2 1532 374 204 26 13 chr1 124130079 124130166 -73065266 - B3A SINE B2 -125 91 4 2 1532 323 336 57 72 chr1 124130192 124130471 -73064961 - L1MDa LINE L1 -4983 1650 1376 2 1532 496 256 40 8 chr1 124130496 124130622 -73064810 - ID_B1 SINE B4 -3 221 92 2 1532 1312 181 0 0 chr1 124130634 124130860 -73064572 - URR1A DNA MER1_type 0 226 1 2 1532 777 85 0 23 chr1 124130885 124131018 -73064414 - L1Md_F2 LINE L1 0 6582 6453 2 1532 345 24 0 0 chr1 124131085 124131127 -73064305 + (TGG)n Simple_repeat Simple_repeat 3 44 0 2 1532 363 299 0 0 chr1 124131131 124131208 -73064224 - RSINE1 SINE B4 0 165 89 2 1532 627 332 10 0 chr1 124132585 124132793 -73062639 - ID_B1 SINE B4 -10 214 5 2 1532 1392 228 29 10 chr1 124133338 124133644 -73061788 + MTE2b LTR MaLR 5 316 -63 2 1532 597 294 0 43 chr1 124133647 124133835 -73061597 + B3A SINE B2 1 180 -18 2 1532 358 242 30 15 chr1 124133840 124133974 -73061458 + (TAGA)n Simple_repeat Simple_repeat 2 137 0 2 1532 278 211 26 9 chr1 124133977 124134092 -73061340 + (CAGA)n Simple_repeat Simple_repeat 2 118 0 2 1532 420 153 14 0 chr1 124134108 124134180 -73061252 + MTE2b LTR MaLR 307 379 0 2 1532 1242 41 0 0 chr1 124134816 124134961 -73060471 + B1_Mus1 SINE Alu 2 146 -2 2 1532 354 304 114 48 chr1 124135060 124135333 -73060099 - B4A SINE B4 0 292 2 2 1532 278 296 153 46 chr1 124136294 124136425 -73059007 - B4A SINE B4 0 292 148 2 1532 1533 232 96 0 chr1 124136421 124136796 -73058636 + MTD LTR MaLR 9 419 0 2 1532 276 91 0 43 chr1 124136879 124136948 -73058484 + (TTTTTG)n Simple_repeat Simple_repeat 1 66 0 2 1532 325 269 103 0 chr1 124136948 124137026 -73058406 - B4A SINE B4 -206 86 1 2 1532 252 0 0 0 chr1 124137234 124137262 -73058170 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1532 542 285 168 8 chr1 124137452 124137696 -73057736 + B4A SINE B4 1 283 -9 2 1532 375 148 0 0 chr1 124138303 124138364 -73057068 + Lx8 LINE L1 7032 7092 -381 2 1532 635 319 36 42 chr1 124138520 124138713 -73056719 + B4 SINE B4 16 207 -85 2 1532 313 281 64 86 chr1 124139164 124139195 -73056237 - B2_Mm2 SINE B2 -11 184 153 2 1532 915 42 0 0 chr1 124139195 124139315 -73056117 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1532 510 281 64 86 chr1 124139315 124139470 -73055962 - B3A SINE B2 -32 166 2 2 1532 560 314 46 43 chr1 124140198 124140527 -73054905 - Lx8 LINE L1 0 7473 7144 2 1532 430 332 90 30 chr1 124140886 124141153 -73054279 - Lx8 LINE L1 -354 7119 6837 2 1532 197 326 20 30 chr1 124141168 124141269 -73054163 + MIRb SINE MIR 123 222 -46 2 1532 441 0 0 0 chr1 124141520 124141569 -73053863 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1532 436 284 191 0 chr1 124141577 124141718 -73053714 - B3A SINE B2 -27 171 4 2 1532 463 264 137 6 chr1 124142285 124142453 -73052979 - B3A SINE B2 -8 190 1 2 1532 426 343 48 14 chr1 124143318 124143463 -73051969 + RSINE1 SINE B4 3 152 -13 2 1532 372 59 0 0 chr1 124143469 124143520 -73051912 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1532 225 0 0 0 chr1 124143520 124143545 -73051887 + (CCA)n Simple_repeat Simple_repeat 2 26 0 2 1532 181 296 174 9 chr1 124144616 124144725 -73050707 + MIRc SINE MIR 36 162 -106 2 1532 321 89 0 0 chr1 124144733 124144778 -73050654 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1532 539 304 42 48 chr1 124145007 124145210 -73050222 + B3A SINE B2 2 202 -14 2 1532 449 403 7 0 chr1 124145271 124145420 -73050012 + RSINE1 SINE B4 2 151 -14 2 1532 903 326 28 24 chr1 124146129 124146418 -73049014 + B4A SINE B4 1 290 -2 2 1532 22 0 0 0 chr1 124146454 124146476 -73048956 + AT_rich Low_complexity Low_complexity 1 22 0 2 1532 278 328 50 54 chr1 124146658 124146885 -73048547 + MIR SINE MIR 33 256 -6 2 1532 216 0 0 0 chr1 124147340 124147364 -73048068 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1532 252 0 0 0 chr1 124147364 124147391 -73048041 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1532 5733 96 40 5 chr1 124147491 124148317 -73047115 + Lx3A LINE L1 6123 6977 -4 2 1532 554 327 109 8 chr1 124148892 124149157 -73046275 + Lx8 LINE L1 7172 7463 -10 2 1532 434 279 9 0 chr1 124149604 124149715 -73045717 - B3A SINE B2 -82 116 5 2 1532 340 176 43 29 chr1 124150254 124150324 -73045108 - MTD LTR MaLR 0 419 349 2 1532 757 350 54 21 chr1 124150361 124150641 -73044791 - B4A SINE B4 0 292 4 2 1532 27 0 0 0 chr1 124150882 124150909 -73044523 + AT_rich Low_complexity Low_complexity 1 27 0 2 1532 520 291 29 51 chr1 124151191 124151440 -73043992 + B4A SINE B4 7 292 0 2 1532 1102 281 50 33 chr1 124152425 124152786 -73042646 + MTEb LTR MaLR 13 379 0 2 1532 961 298 83 21 chr1 124153502 124153838 -73041594 + ORR1E LTR MaLR 1 357 -2 2 1532 358 303 93 59 chr1 124154341 124154611 -73040821 - MER74A LTR ERVL -130 428 150 2 1532 594 292 76 3 chr1 124154859 124155018 -73040414 + ORR1E LTR MaLR 3 174 -220 2 1532 282 279 34 23 chr1 124155007 124155095 -73040337 - B4A SINE B4 -194 98 10 2 1532 329 133 0 13 chr1 124155115 124155135 -73040297 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1532 474 18 0 0 chr1 124155135 124155190 -73040242 + (TCC)n Simple_repeat Simple_repeat 2 56 0 2 1532 329 133 0 13 chr1 124155190 124155245 -73040187 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1532 593 240 36 72 chr1 124155247 124155440 -73039992 + ORR1E LTR MaLR 168 353 -6 2 1532 432 221 102 47 chr1 124155623 124155751 -73039681 + RMER20B LTR ERVK 129 263 -364 2 1532 589 266 267 21 chr1 124155751 124156077 -73039355 + RMER20B LTR ERVK 190 595 -32 2 1532 2234 202 2 9 chr1 124156155 124156579 -73038853 + MTC LTR MaLR 1 421 0 2 1532 399 21 0 0 chr1 124156670 124156718 -73038714 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1532 188 317 33 0 chr1 124157114 124157174 -73038258 - MIRm SINE MIR 0 276 215 2 1532 276 100 0 0 chr1 124157302 124157342 -73038090 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1532 477 0 0 0 chr1 124157342 124157394 -73038038 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1532 372 278 21 7 chr1 124157478 124157623 -73037809 + Lx9 LINE L1 7257 7403 -241 2 1532 924 277 93 11 chr1 124157693 124157963 -73037469 + MTE2b LTR MaLR 1 292 -87 2 1532 316 187 17 18 chr1 124158112 124158198 -73037234 + MTE2b LTR MaLR 286 374 -5 2 1532 246 247 311 25 chr1 124158482 124158639 -73036793 + B2_Mm2 SINE B2 1 216 0 2 1532 445 376 126 14 chr1 124158796 124159160 -73036272 - Arthur1B DNA Tip100 -813 412 8 3 1532 700 240 76 56 chr1 124159245 124159594 -73035838 + MER57D LTR ERV1 4 399 -12 3 1532 615 303 17 81 chr1 124159887 124160182 -73035250 - Lx8 LINE L1 -479 6994 6719 3 1532 398 311 88 102 chr1 124160512 124160647 -73034785 - MER20 DNA MER1_type -5 214 75 3 1532 553 332 32 9 chr1 124160647 124160866 -73034566 - ID_B1 SINE B4 0 224 1 3 1532 398 311 88 102 chr1 124160866 124160945 -73034487 - MER20 DNA MER1_type -145 74 3 3 1532 275 295 13 13 chr1 124161495 124161574 -73033858 - B4 SINE B4 -25 267 189 3 1532 376 325 61 67 chr1 124162213 124162378 -73033054 + ORR1E LTR MaLR 13 176 -198 3 1532 6810 73 26 6 chr1 124162378 124163404 -73032028 - L1_Mus2 LINE L1 -3 6563 5518 3 1532 480 333 96 61 chr1 124163587 124163900 -73031532 - MT2A LTR ERVL -12 521 198 3 1532 2745 202 61 4 chr1 124163901 124164443 -73030989 - RMER15 LTR ERVL 0 575 3 3 1532 252 341 74 53 chr1 124164448 124164532 -73030900 - MT2A LTR ERVL -324 209 18 3 1532 428 308 0 0 chr1 124164532 124164636 -73030796 - MTEa LTR MaLR -258 121 18 3 1532 418 65 25 25 chr1 124164766 124164845 -73030587 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 3 1532 1112 258 34 106 chr1 124165013 124165399 -73030033 - MTE2a LTR MaLR -2 377 20 3 1532 628 351 16 0 chr1 124165957 124166145 -73029287 + B3A SINE B2 1 191 -7 3 1532 510 17 0 0 chr1 124166266 124166325 -73029107 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1532 185 0 40 0 chr1 124166513 124166538 -73028894 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1532 216 158 0 0 chr1 124166538 124166576 -73028856 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1532 437 250 150 48 chr1 124166577 124166724 -73028708 - RSINE1 SINE B4 0 165 4 3 1532 707 264 6 19 chr1 124167179 124167337 -73028095 + B4 SINE B4 65 220 -72 3 1532 248 0 31 0 chr1 124167450 124167482 -73027950 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 1532 659 228 14 85 chr1 124167540 124167751 -73027681 - B3A SINE B2 -1 197 2 3 1532 216 149 0 0 chr1 124168086 124168133 -73027299 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1532 485 302 46 76 chr1 124168181 124168378 -73027054 - B3A SINE B2 0 216 26 3 1532 1294 93 0 0 chr1 124168488 124168670 -73026762 + L1_Mus1 LINE L1 6385 6566 -1 3 1532 486 75 0 0 chr1 124169146 124169213 -73026219 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1532 440 311 143 0 chr1 124169261 124169380 -73026052 - RSINE1 SINE B4 -26 139 4 3 1532 970 178 114 0 chr1 124169412 124169614 -73025818 - URR1A DNA MER1_type -1 225 1 3 1532 496 0 31 0 chr1 124171113 124171177 -73024255 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1532 601 242 41 96 chr1 124171204 124171227 -73024205 - B2_Mm2 SINE B2 -7 188 170 3 1532 573 115 0 0 chr1 124171227 124171314 -73024118 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1532 915 242 41 96 chr1 124171314 124171487 -73023945 - B3A SINE B2 -26 169 3 3 1532 402 327 125 37 chr1 124171528 124171744 -73023688 + MER73 LTR ERVL 2 236 -408 3 1532 863 284 101 26 chr1 124171804 124171864 -73023568 - B4A SINE B4 -4 288 228 3 1532 2031 193 50 7 chr1 124171864 124172287 -73023145 + BGLII_B LTR ERVK 1 441 0 3 1532 863 284 101 26 chr1 124172287 124172494 -73022938 - B4A SINE B4 -65 227 2 3 1532 480 164 0 0 chr1 124172633 124172767 -73022665 + A-rich Low_complexity Low_complexity 1 134 0 3 1532 444 257 139 20 chr1 124172783 124172934 -73022498 + MER73 LTR ERVL 473 641 -3 3 1532 374 302 47 0 chr1 124173084 124173190 -73022242 + B4A SINE B4 8 118 -174 3 1532 508 292 8 30 chr1 124173248 124173382 -73022050 + B4 SINE B4 93 223 -69 3 1532 423 78 0 0 chr1 124173410 124173474 -73021958 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1532 408 240 0 0 chr1 124173546 124173725 -73021707 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1532 318 361 9 9 chr1 124174387 124174496 -73020936 - B4A SINE B4 0 292 184 3 1532 597 263 15 0 chr1 124174957 124175090 -73020342 - MTEb LTR MaLR -3 376 242 3 1532 1754 204 14 47 chr1 124175251 124175612 -73019820 - ORR1C1 LTR MaLR -14 364 16 3 1532 471 299 0 0 chr1 124175669 124175766 -73019666 - B4 SINE B4 -81 211 115 3 1532 259 335 60 54 chr1 124176131 124176345 -73019087 + LTRIS5 LTR ERV1 213 593 -31 3 1532 371 267 24 87 chr1 124176336 124176463 -73018969 - B4 SINE B4 -173 119 1 3 1532 525 316 47 16 chr1 124176578 124176768 -73018664 + Tigger5 DNA MER2_type 47 242 -2164 3 1532 652 265 56 39 chr1 124177242 124177553 -73017879 - RMER15 LTR ERVL -176 399 27 3 1532 466 259 0 17 chr1 124177641 124177759 -73017673 + PB1D10 SINE Alu 1 116 -1 3 1532 220 342 66 75 chr1 124177823 124178035 -73017397 + L2a LINE L2 3211 3420 -6 3 1532 1037 248 83 105 chr1 124178307 124178811 -73016621 + RMER5 LTR ERV1 40 532 -2 3 1532 414 154 0 0 chr1 124181062 124181140 -73014292 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1532 267 255 71 113 chr1 124181291 124181459 -73013973 - B2_Mm2 SINE B2 -20 175 15 3 1532 244 299 0 61 chr1 124181780 124181862 -73013570 + ID4_ SINE ID 2 78 -5 3 1532 734 333 63 0 chr1 124181962 124182217 -73013215 + B4A SINE B4 10 280 -12 3 1532 515 334 64 84 chr1 124182241 124182595 -73012837 + MLT1D LTR MaLR 1 356 -149 3 1532 811 220 208 44 chr1 124182595 124182937 -73012495 + RMER10B LTR ERVL 1 398 0 3 1532 515 334 64 84 chr1 124182937 124183082 -73012350 + MLT1D LTR MaLR 357 490 -15 3 1532 302 300 0 0 chr1 124183772 124183842 -73011590 - ID4_ SINE ID -2 81 12 3 1532 525 249 75 26 chr1 124184817 124185044 -73010388 + L1_Mur3 LINE L1 857 1094 -6634 3 1532 8032 200 98 89 chr1 124185046 124185925 -73009507 + L1_Mur3 LINE L1 1995 2885 -2995 3 1532 612 0 0 0 chr1 124185925 124185993 -73009439 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 3 1532 8032 200 98 89 chr1 124185993 124186263 -73009169 + L1_Mur3 LINE L1 2886 3170 -2710 3 1532 262 250 109 31 chr1 124186263 124186391 -73009041 + RLTR12B LTR ERVK 378 515 -13 3 1532 8032 200 98 89 chr1 124186391 124187434 -73007998 + L1_Mur3 LINE L1 3171 4274 -1606 3 1532 255 31 0 0 chr1 124187434 124187466 -73007966 + (CCA)n Simple_repeat Simple_repeat 1 32 0 3 1532 8032 200 98 89 chr1 124187466 124187966 -73007466 + L1_Mur3 LINE L1 4275 4840 -1040 3 1532 1465 251 60 10 chr1 124187967 124188366 -73007066 + Lx6 LINE L1 5850 6268 -1192 3 1532 1006 283 68 13 chr1 124188365 124188837 -73006595 + Lx6 LINE L1 6450 6894 -566 3 1532 432 0 0 0 chr1 124188928 124188976 -73006456 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1532 575 296 107 69 chr1 124188998 124189259 -73006173 - B4A SINE B4 -12 280 10 3 1532 666 143 23 0 chr1 124189279 124189412 -73006020 + CT-rich Low_complexity Low_complexity 1 136 0 3 1532 924 252 14 0 chr1 124189959 124190177 -73005255 + Lx8 LINE L1 6894 7114 -359 3 1532 231 103 0 0 chr1 124191310 124191349 -73004083 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1532 597 293 59 111 chr1 124191351 124191658 -73003774 - B4 SINE B4 0 292 2 3 1532 225 178 0 0 chr1 124191853 124191898 -73003534 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1532 270 185 0 0 chr1 124191897 124191978 -73003454 + GA-rich Low_complexity Low_complexity 2 82 0 3 1532 433 56 0 0 chr1 124192104 124192158 -73003274 + RLTR22_Mus LTR ERVK 1 54 -1754 3 1532 565 204 191 38 chr1 124192363 124192546 -73002886 + MTD LTR MaLR 197 407 -12 3 1532 1892 224 153 46 chr1 124192546 124193191 -73002241 + MTD-int LTR MaLR 18 732 -366 3 1532 783 288 101 8 chr1 124193350 124193588 -73001844 - B4A SINE B4 -22 270 11 3 1532 845 323 88 80 chr1 124193671 124194219 -73001213 + MLT2B3 LTR ERVL 3 554 0 3 1532 303 295 60 67 chr1 124194428 124194577 -73000855 - B1F2 SINE Alu 0 149 2 3 1532 646 274 18 6 chr1 124194577 124194629 -73000803 - B4 SINE B4 -205 87 34 3 1532 733 105 0 9 chr1 124194633 124194748 -73000684 - L1_Mus1 LINE L1 0 6567 6454 3 1532 22 35 0 0 chr1 124195240 124195269 -73000163 + AT_rich Low_complexity Low_complexity 1 29 0 3 1532 290 138 17 0 chr1 124195547 124195605 -72999827 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1532 695 291 13 80 chr1 124195636 124195680 -72999752 - B3 SINE B2 -7 209 169 3 1532 375 23 0 0 chr1 124195680 124195724 -72999708 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1532 695 291 13 80 chr1 124195724 124195903 -72999529 - B3 SINE B2 -48 168 1 3 1532 327 286 141 47 chr1 124195903 124196115 -72999317 - B4 SINE B4 -59 233 2 3 1532 335 301 104 136 chr1 124196501 124196913 -72998519 + RMER10A LTR ERVL 18 416 -26 3 1532 326 244 60 12 chr1 124197157 124197240 -72998192 - B4 SINE B4 -14 278 192 3 1532 471 313 72 39 chr1 124197246 124197525 -72997907 + Lx8 LINE L1 6843 7130 -343 3 1532 418 267 90 30 chr1 124197739 124197905 -72997527 - MTE2a LTR MaLR -33 346 171 3 1532 1255 176 107 4 chr1 124197921 124198201 -72997231 - RMER1B Other Other 0 1066 758 3 1532 22 35 0 0 chr1 124198801 124198830 -72996602 + AT_rich Low_complexity Low_complexity 1 29 0 3 1532 408 20 0 0 chr1 124198830 124198879 -72996553 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1532 219 355 72 33 chr1 124198933 124199036 -72996396 - PB1D10 SINE Alu -35 114 5 3 1532 1405 165 87 5 chr1 124199180 124199604 -72995828 - RLTR11A LTR ERVK 0 528 7 3 1532 372 309 14 61 chr1 124200265 124200413 -72995019 - MTE2a LTR MaLR -205 154 14 3 1532 299 211 11 0 chr1 124200968 124201058 -72994374 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 1532 545 338 43 29 chr1 124201105 124201382 -72994050 - B4A SINE B4 -8 284 4 3 1532 300 330 45 9 chr1 124201407 124201517 -72993915 + L1MD LINE L1 5176 5289 -857 3 1532 671 283 5 43 chr1 124201525 124201713 -72993719 + B3A SINE B2 1 181 -17 3 1532 333 159 0 0 chr1 124201721 124201784 -72993648 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1532 255 31 0 0 chr1 124202573 124202605 -72992827 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1532 657 38 0 0 chr1 124202605 124202684 -72992748 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1532 409 298 46 53 chr1 124202701 124202832 -72992600 - RSINE1 SINE B4 -33 132 3 3 1532 23 0 0 0 chr1 124203015 124203038 -72992394 + AT_rich Low_complexity Low_complexity 1 23 0 3 1532 575 281 21 43 chr1 124203052 124203238 -72992194 - B3A SINE B2 -16 182 1 3 1532 478 79 26 0 chr1 124204019 124204095 -72991337 - L1Md_F3 LINE L1 -14 6570 6493 3 1532 6871 87 15 3 chr1 124204356 124205351 -72990081 - L1_Mus4 LINE L1 0 6636 5630 3 1532 216 0 0 0 chr1 124205376 124205400 -72990032 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1532 807 281 109 31 chr1 124205400 124205646 -72989786 - L1MC1 LINE L1 -386 5947 5693 4 1532 1724 228 90 5 chr1 124205646 124206034 -72989398 + MTC LTR MaLR 1 421 0 4 1532 807 281 109 31 chr1 124206034 124206363 -72989069 - L1MC1 LINE L1 -641 5692 5327 4 1532 330 26 0 0 chr1 124206384 124206423 -72989009 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1532 603 311 18 6 chr1 124206453 124206618 -72988814 - MTE2a LTR MaLR 0 379 213 4 1532 1138 299 72 23 chr1 124206622 124207013 -72988419 - MTD LTR MaLR 0 419 10 4 1532 669 309 32 43 chr1 124207190 124207376 -72988056 + B3A SINE B2 1 184 -14 4 1532 318 26 0 0 chr1 124207820 124207859 -72987573 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1532 551 355 36 0 chr1 124207862 124208028 -72987404 - B3A SINE B2 -24 174 3 4 1532 22 0 0 0 chr1 124208060 124208082 -72987350 + AT_rich Low_complexity Low_complexity 1 22 0 4 1532 322 301 287 31 chr1 124208293 124208516 -72986916 + B4 SINE B4 2 281 -11 4 1532 213 186 0 23 chr1 124209020 124209064 -72986368 + RSINE1 SINE B4 83 125 -40 4 1532 369 0 0 0 chr1 124209100 124209141 -72986291 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1532 549 0 0 0 chr1 124209141 124209201 -72986231 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1532 7221 172 27 14 chr1 124209310 124210936 -72984496 - Lx2 LINE L1 0 6997 5348 4 1532 2622 88 54 10 chr1 124210936 124211325 -72984107 - L1Md_F2 LINE L1 0 6582 6177 4 1532 3737 174 11 7 chr1 124211325 124211540 -72983892 - Lx2 LINE L1 -530 5347 5128 4 1532 1934 142 20 47 chr1 124211538 124211944 -72983488 + L1_Mur2 LINE L1 4499 4893 -984 4 1532 201 204 0 20 chr1 124212010 124212060 -72983372 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1532 495 0 0 0 chr1 124212709 124212764 -72982668 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1532 369 226 0 0 chr1 124212764 124212879 -72982553 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 1532 459 97 0 0 chr1 124212887 124212949 -72982483 - RLTR26 LTR ERVK 0 642 581 4 1532 12709 81 1 30 chr1 124212949 124215528 -72979904 - L1Md_F LINE L1 -2898 2985 487 4 1532 1658 182 10 0 chr1 124215529 124215820 -72979612 - RLTR26 LTR ERVK -348 294 1 4 1532 274 267 173 0 chr1 124215842 124215917 -72979515 - B4A SINE B4 -201 91 4 4 1532 224 282 103 0 chr1 124216074 124216152 -72979280 - B1_Mm SINE Alu -52 95 10 4 1532 407 239 205 0 chr1 124216097 124216214 -72979218 - ID_B1 SINE B4 -79 145 5 4 1532 268 301 108 0 chr1 124216276 124216369 -72979063 - B1_Mur1 SINE Alu -25 124 22 4 1532 569 276 126 0 chr1 124217003 124217202 -72978230 - ID_B1 SINE B4 0 224 1 4 1532 6012 114 13 3 chr1 124217218 124218114 -72977318 + Lx3A LINE L1 6066 6970 -11 4 1532 1207 43 0 18 chr1 124218118 124218282 -72977150 + (GAAA)n Simple_repeat Simple_repeat 4 164 0 4 1532 359 217 50 14 chr1 124220438 124220578 -72974854 + (TCTA)n Simple_repeat Simple_repeat 4 148 0 4 1532 605 110 10 0 chr1 124220919 124221019 -72974413 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1532 460 286 19 9 chr1 124221019 124221125 -72974307 - B4A SINE B4 -23 269 163 4 1532 360 0 0 0 chr1 124221168 124221208 -72974224 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1532 249 360 95 32 chr1 124221607 124221828 -72973604 - MIRb SINE MIR -32 236 2 4 1532 250 319 80 55 chr1 124222876 124223075 -72972357 - RLTR14 LTR ERV1 -14 368 165 4 1532 260 227 30 15 chr1 124223326 124223393 -72972039 + C-rich Low_complexity Low_complexity 3 70 0 4 1532 747 62 0 0 chr1 124223407 124223504 -72971928 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 4 1532 432 264 0 0 chr1 124223505 124223630 -72971802 + C-rich Low_complexity Low_complexity 1 125 0 4 1532 712 192 12 12 chr1 124223599 124223836 -72971596 + CT-rich Low_complexity Low_complexity 1 237 0 4 1532 183 42 0 0 chr1 124223987 124224011 -72971421 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1532 1041 266 43 15 chr1 124224011 124224408 -72971024 + L1MA4A LINE L1 5493 5900 -403 4 1532 668 194 36 0 chr1 124224606 124224745 -72970687 + URR1A DNA MER1_type 7 150 -76 4 1532 662 307 13 0 chr1 124225343 124225496 -72969936 + RSINE1 SINE B4 4 158 -7 4 1532 24 32 0 0 chr1 124225537 124225568 -72969864 + AT_rich Low_complexity Low_complexity 1 31 0 4 1532 368 370 79 12 chr1 124225596 124225701 -72969731 - MER2 DNA MER2_type -4 341 224 4 1532 2311 55 6 43 chr1 124225701 124226025 -72969407 - L1Md_F2 LINE L1 -7 6575 6264 4 1532 368 370 79 12 chr1 124226025 124226160 -72969272 - MER2 DNA MER2_type -122 223 85 4 1532 699 258 40 15 chr1 124226563 124226764 -72968668 + B3 SINE B2 1 206 -10 4 1532 2319 95 6 0 chr1 124226778 124227105 -72968327 - L1_Mus3 LINE L1 -221 6417 6089 4 1532 1237 82 25 5 chr1 124227106 124227303 -72968129 + L1_Mus3 LINE L1 6436 6636 -2 4 1532 426 85 0 0 chr1 124227350 124227409 -72968023 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1532 592 322 36 18 chr1 124227432 124227653 -72967779 - B4A SINE B4 -19 273 49 4 1532 22 0 0 0 chr1 124227654 124227676 -72967756 + AT_rich Low_complexity Low_complexity 1 22 0 4 1532 881 234 25 30 chr1 124227676 124227874 -72967558 - B3 SINE B2 0 216 20 4 1532 466 283 18 0 chr1 124228143 124228256 -72967176 + MTEb LTR MaLR 4 118 -261 4 1532 742 299 84 121 chr1 124228257 124228687 -72966745 - MTD LTR MaLR 0 419 6 4 1532 801 223 205 5 chr1 124228691 124228910 -72966522 + MTEb LTR MaLR 117 379 0 4 1532 531 45 0 0 chr1 124229645 124229711 -72965721 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1532 286 173 58 0 chr1 124229725 124229777 -72965655 - ID SINE ID -142 82 28 4 1532 288 91 0 0 chr1 124230700 124230744 -72964688 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1532 470 339 8 8 chr1 124230747 124230878 -72964554 - RSINE1 SINE B4 -30 135 5 4 1532 221 0 0 33 chr1 124231873 124231889 -72963543 + (TTCTC)n Simple_repeat Simple_repeat 5 20 0 4 1532 1079 124 6 0 chr1 124231889 124232066 -72963366 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1532 221 0 0 33 chr1 124232066 124232079 -72963353 + (TTCTC)n Simple_repeat Simple_repeat 2 14 0 4 1532 583 285 19 25 chr1 124232088 124232250 -72963182 - MTE2b LTR MaLR -71 308 148 4 1532 238 242 104 15 chr1 124232234 124232301 -72963131 + B3 SINE B2 106 178 -38 4 1532 222 105 0 0 chr1 124232318 124232356 -72963076 + (CATA)n Simple_repeat Simple_repeat 2 39 0 4 1532 220 326 113 62 chr1 124233477 124233775 -72961657 - L2b LINE L2 -22 3353 3064 4 1532 312 305 23 0 chr1 124233892 124233990 -72961442 + GA-rich Low_complexity Low_complexity 3 101 0 4 1532 1540 163 199 0 chr1 124233990 124234296 -72961136 + ORR1B2 LTR MaLR 1 367 0 4 1532 312 305 23 0 chr1 124234296 124234328 -72961104 + polypurine Low_complexity Low_complexity 102 135 0 4 1532 1323 252 69 28 chr1 124234572 124234726 -72960706 - MTD LTR MaLR -9 410 257 4 1532 790 168 204 5 chr1 124234726 124234912 -72960520 - URR1B DNA MER1_type 0 225 3 4 1532 1323 252 69 28 chr1 124234912 124235149 -72960283 - MTD LTR MaLR -163 256 4 4 1532 246 274 0 0 chr1 124235450 124235563 -72959869 + (TG)n Simple_repeat Simple_repeat 1 113 0 4 1532 829 296 47 16 chr1 124235600 124235854 -72959578 - B4A SINE B4 -11 281 20 4 1532 867 78 0 0 chr1 124236981 124237096 -72958336 + B1_Mus1 SINE Alu 34 148 0 4 1532 576 111 0 0 chr1 124237096 124237186 -72958246 + (GAAAA)n Simple_repeat Simple_repeat 4 93 0 4 1532 1025 299 97 68 chr1 124237621 124237865 -72957567 + RMER15 LTR ERVL 3 270 -305 4 1532 3834 50 0 0 chr1 124237865 124238329 -72957103 - L1Md_T LINE L1 0 6582 6119 4 1532 1025 299 97 68 chr1 124238329 124238641 -72956791 + RMER15 LTR ERVL 271 575 0 4 1532 23 0 0 0 chr1 124238648 124238671 -72956761 + AT_rich Low_complexity Low_complexity 1 23 0 4 1532 542 317 88 48 chr1 124238921 124239193 -72956239 + B4A SINE B4 10 292 0 4 1532 1930 196 31 8 chr1 124239402 124239787 -72955645 - ORR1B1 LTR MaLR 0 394 1 4 1532 263 113 0 19 chr1 124239843 124239897 -72955535 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1532 363 276 74 59 chr1 124240735 124240870 -72954562 - MER34A1 LTR ERV1 0 587 451 4 1532 279 324 21 42 chr1 124241074 124241216 -72954216 - MER34A1 LTR ERV1 -91 496 358 4 1532 744 264 47 161 chr1 124241221 124241582 -72953850 - MTE2b LTR MaLR -2 377 58 4 1532 387 216 45 0 chr1 124241584 124241672 -72953760 - MTE2b LTR MaLR -282 97 6 4 1532 613 314 6 22 chr1 124242127 124242306 -72953126 + B3A SINE B2 1 176 -22 4 1532 971 25 0 85 chr1 124242312 124242663 -72952769 + (TCTCCC)n Simple_repeat Simple_repeat 1 321 0 4 1532 371 352 0 23 chr1 124242901 124243032 -72952400 + ORR1E LTR MaLR 63 190 -169 4 1532 837 307 43 68 chr1 124243256 124243640 -72951792 + MTD LTR MaLR 35 388 -31 4 1532 559 254 58 23 chr1 124243793 124243966 -72951466 + MER58B DNA MER1_type 158 336 -5 4 1532 1205 293 10 27 chr1 124244041 124244057 -72951375 - B4A SINE B4 0 292 279 4 1532 432 0 0 0 chr1 124244057 124244105 -72951327 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1532 1205 293 10 27 chr1 124244105 124244383 -72951049 - B4A SINE B4 -14 278 3 4 1532 974 107 7 0 chr1 124244894 124245044 -72950388 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 4 1532 704 273 0 11 chr1 124245206 124245380 -72950052 - B2_Mm2 SINE B2 -23 172 1 4 1532 384 286 62 49 chr1 124245420 124245582 -72949850 - RSINE1 SINE B4 0 165 2 4 1532 618 26 0 0 chr1 124245603 124245679 -72949753 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1532 402 39 0 0 chr1 124245679 124245731 -72949701 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1532 402 299 156 102 chr1 124245787 124245973 -72949459 + MER31B LTR ERV1 59 254 -212 4 1532 7000 75 15 5 chr1 124245973 124247084 -72948348 + L1_Mus2 LINE L1 5437 6565 -1 4 1532 549 284 16 124 chr1 124247140 124247389 -72948043 + MER31B LTR ERV1 245 466 0 4 1532 183 156 0 0 chr1 124248408 124248440 -72946992 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1532 341 319 26 9 chr1 124248510 124248624 -72946808 - Charlie10 DNA MER1_type -2639 183 68 4 1532 215 278 0 0 chr1 124248808 124248862 -72946570 - PB1 SINE Alu -2 125 72 4 1532 309 277 36 0 chr1 124248946 124249058 -72946374 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 1532 627 14 0 0 chr1 124249058 124249130 -72946302 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1532 24 0 0 0 chr1 124249438 124249462 -72945970 + AT_rich Low_complexity Low_complexity 1 24 0 5 1532 869 309 30 38 chr1 124249624 124249997 -72945435 - ORR1D2 LTR MaLR 0 370 1 5 1532 58 74 0 0 chr1 124250139 124250260 -72945172 + AT_rich Low_complexity Low_complexity 1 121 0 5 1532 210 119 0 143 chr1 124250545 124250594 -72944838 + B2_Mm2 SINE B2 1 42 -153 5 1532 241 307 4 28 chr1 124250568 124250650 -72944782 + B3A SINE B2 82 163 -53 5 1532 513 32 0 0 chr1 124250650 124250713 -72944719 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1532 24 0 0 0 chr1 124250911 124250935 -72944497 + AT_rich Low_complexity Low_complexity 1 24 0 5 1532 423 38 0 0 chr1 124251246 124251299 -72944133 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1532 358 80 26 0 chr1 124251884 124251941 -72943491 - MTD LTR MaLR 0 419 311 5 1532 1186 195 4 56 chr1 124251943 124252177 -72943255 + MTD LTR MaLR 27 248 -171 5 1532 493 306 14 20 chr1 124252250 124252397 -72943035 + ORR1E LTR MaLR 13 158 -201 5 1532 2143 125 6 15 chr1 124252401 124252727 -72942705 + ORR1A2 LTR MaLR 5 327 0 5 1532 1906 111 38 3 chr1 124252727 124253017 -72942415 + ORR1A2-int LTR MaLR 1 300 -1663 5 1532 1233 91 163 0 chr1 124253703 124253912 -72941520 - LSU-rRNA_Hsa rRNA rRNA -4666 369 127 5 1532 2641 59 48 0 chr1 124254967 124255325 -72940107 + L1_Mus1 LINE L1 6146 6520 -47 5 1532 441 367 16 0 chr1 124255778 124255906 -72939526 + RSINE1 SINE B4 20 149 -16 5 1532 22 56 0 0 chr1 124255916 124255952 -72939480 + AT_rich Low_complexity Low_complexity 1 36 0 5 1533 662 226 88 28 chr1 124256548 124256730 -72938702 - URR1A DNA MER1_type -33 193 1 5 1533 824 207 112 0 chr1 124256732 124256911 -72938521 + MTC LTR MaLR 35 233 -188 5 1533 6063 207 161 7 chr1 124257383 124260380 -72935052 - Lx2B LINE L1 -4 6996 3514 5 1533 5071 138 40 10 chr1 124260374 124261380 -72934052 - L1_Mm LINE L1 -547 5336 4259 5 1533 7962 48 4 2 chr1 124261380 124262361 -72933071 + L1Md_F2 LINE L1 5587 6569 -13 5 1533 3482 257 158 34 chr1 124262361 124263363 -72932069 - L1_Mm LINE L1 -1628 4258 3058 5 1533 942 9 0 0 chr1 124263363 124263470 -72931962 + (TTC)n Simple_repeat Simple_repeat 2 108 0 5 1533 3482 257 158 34 chr1 124263470 124263704 -72931728 - L1_Mm LINE L1 -2829 3057 2795 5 1533 474 61 0 0 chr1 124263704 124263770 -72931662 + (TTG)n Simple_repeat Simple_repeat 1 66 0 5 1533 3482 257 158 34 chr1 124263770 124263970 -72931462 - L1_Mm LINE L1 -3092 2794 2595 5 1533 4090 163 11 78 chr1 124263988 124264121 -72931311 + RLTR13D3 LTR ERVK 341 469 -645 5 1533 3612 67 19 23 chr1 124264121 124264598 -72930834 - MT2C_Mm LTR ERVL 0 475 1 5 1533 4090 163 11 78 chr1 124264598 124265294 -72930138 + RLTR13D3 LTR ERVK 470 1114 0 5 1533 297 0 0 0 chr1 124265741 124265774 -72929658 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1533 617 299 42 6 chr1 124265778 124265943 -72929489 - B3A SINE B2 -27 171 1 5 1533 743 328 81 29 chr1 124266028 124266376 -72929056 + ORR1D2 LTR MaLR 1 366 -4 5 1533 24 0 0 0 chr1 124267208 124267232 -72928200 + AT_rich Low_complexity Low_complexity 1 24 0 5 1533 495 304 129 16 chr1 124267232 124267426 -72928006 - ID_B1 SINE B4 -7 217 2 5 1533 248 343 75 0 chr1 124267430 124267564 -72927868 - L2 LINE L2 -604 2815 2672 5 1533 2211 226 99 16 chr1 124267692 124268258 -72927174 + Lx6 LINE L1 6842 7454 -6 5 1533 238 310 11 0 chr1 124268325 124268412 -72927020 - L2 LINE L2 -1021 2398 2311 5 1533 230 238 0 0 chr1 124268678 124268720 -72926712 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1533 291 356 94 71 chr1 124268727 124268854 -72926578 - RSINE1 SINE B4 -2 163 34 5 1533 1218 117 0 0 chr1 124269206 124269503 -72925929 + (CA)n Simple_repeat Simple_repeat 1 297 0 5 1533 317 356 82 64 chr1 124269504 124269675 -72925757 - B4A SINE B4 -14 278 105 5 1533 324 280 10 51 chr1 124269936 124270034 -72925398 + L2c LINE L2 3294 3387 0 5 1533 720 356 21 24 chr1 124271078 124271096 -72924336 - B4A SINE B4 -4 288 271 5 1533 888 91 0 0 chr1 124271096 124271228 -72924204 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 1533 720 356 21 24 chr1 124271228 124271497 -72923935 - B4A SINE B4 -22 270 2 5 1533 1430 182 52 103 chr1 124272019 124272349 -72923083 - MTEa LTR MaLR 0 379 67 5 1533 399 313 70 61 chr1 124272574 124272916 -72922516 - RLTR16 LTR ERVK -256 436 33 5 1533 2947 173 6 0 chr1 124272916 124273460 -72921972 - Lx2 LINE L1 -46 5837 5291 5 1533 6253 148 68 2 chr1 124273470 124274543 -72920889 + Lx2 LINE L1 5854 6997 0 5 1533 991 52 0 0 chr1 124274766 124274900 -72920532 + L1_Mus1 LINE L1 6434 6567 0 5 1533 818 159 14 35 chr1 124275110 124275148 -72920284 + URR1A DNA MER1_type 2 37 -189 5 1533 2639 107 37 25 chr1 124275148 124275550 -72919882 + MTB_Mm LTR MaLR 1 407 0 5 1533 818 159 14 35 chr1 124275550 124275643 -72919789 + URR1A DNA MER1_type 38 130 -96 5 1533 1941 226 29 56 chr1 124275643 124276162 -72919270 + RMER19C LTR ERVK 1 594 -17 5 1533 561 144 52 0 chr1 124276169 124276266 -72919166 + URR1A DNA MER1_type 122 223 -3 5 1533 264 250 0 0 chr1 124276273 124276337 -72919095 + MIRb SINE MIR 173 236 -32 5 1533 516 245 146 61 chr1 124276541 124276706 -72918726 - ORR1E LTR MaLR 0 379 201 5 1533 2027 225 110 8 chr1 124276707 124277235 -72918197 - RLTR31A_Mm LTR ERVK 0 584 3 5 1533 588 282 77 9 chr1 124277237 124277444 -72917988 - ORR1E LTR MaLR -181 178 1 5 1533 429 296 21 68 chr1 124278117 124278309 -72917123 - B3A SINE B2 -15 183 1 5 1533 396 0 0 0 chr1 124278704 124278748 -72916684 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1533 243 0 0 0 chr1 124278748 124278775 -72916657 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1533 375 60 0 0 chr1 124278805 124278855 -72916577 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1533 1479 298 77 9 chr1 124278865 124279447 -72915985 - Lx8 LINE L1 -314 7159 6538 5 1533 423 0 0 0 chr1 124279740 124279787 -72915645 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1533 558 43 0 0 chr1 124280522 124280591 -72914841 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1533 225 336 32 137 chr1 124280635 124280759 -72914673 + B4A SINE B4 59 169 -123 5 1533 236 329 0 14 chr1 124280802 124280873 -72914559 + B3A SINE B2 1 70 -128 5 1533 315 291 97 35 chr1 124280930 124281044 -72914388 + B4A SINE B4 166 286 -6 5 1533 262 308 0 0 chr1 124281064 124281142 -72914290 + CT-rich Low_complexity Low_complexity 2 79 0 5 1533 217 234 10 21 chr1 124281403 124281499 -72913933 + (TATATG)n Simple_repeat Simple_repeat 6 100 0 5 1533 193 208 28 0 chr1 124281540 124281612 -72913820 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 5 1533 7079 46 3 2 chr1 124281719 124282592 -72912840 + L1Md_T LINE L1 5707 6580 -2 5 1533 758 284 50 5 chr1 124283414 124283633 -72911799 - MT2A LTR ERVL 0 533 305 5 1533 4099 56 2 4 chr1 124283660 124284164 -72911268 + RLTR1C LTR ERV1 1 503 0 5 1533 293 250 12 23 chr1 124284243 124284329 -72911103 - MT2A LTR ERVL -443 90 6 5 1533 492 298 147 36 chr1 124284465 124284716 -72910716 + B4A SINE B4 2 280 -12 5 1533 5125 174 16 15 chr1 124284916 124285823 -72909609 + RMER13B LTR ERVK 1 908 0 5 1533 633 27 0 0 chr1 124285954 124286029 -72909403 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 1533 438 88 0 0 chr1 124286029 124286096 -72909336 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1533 405 310 97 56 chr1 124286119 124286314 -72909118 - B4A SINE B4 -87 205 3 5 1533 743 260 0 0 chr1 124286647 124286793 -72908639 + MTE2b LTR MaLR 105 250 -129 5 1533 1058 261 54 32 chr1 124287151 124287520 -72907912 - MTEa LTR MaLR -2 377 1 5 1533 293 353 0 12 chr1 124288129 124288215 -72907217 + B4A SINE B4 2 86 -206 5 1533 547 333 21 10 chr1 124288224 124288418 -72907014 + B3A SINE B2 2 197 -1 5 1533 719 304 49 19 chr1 124288444 124288649 -72906783 + B4A SINE B4 82 292 0 5 1533 777 254 25 15 chr1 124288707 124288903 -72906529 - B3A SINE B2 0 198 1 5 1533 297 303 124 35 chr1 124289312 124289425 -72906007 - B3A SINE B2 -5 193 71 5 1533 227 279 0 0 chr1 124289603 124289664 -72905768 - B3A SINE B2 -106 92 32 5 1533 1441 59 5 0 chr1 124289797 124290017 -72905415 - L1_Mus1 LINE L1 0 6567 6379 5 1533 719 305 20 34 chr1 124290032 124290327 -72905105 - B4A SINE B4 0 292 2 5 1533 1074 70 0 27 chr1 124291235 124291246 -72904186 - B1_Mus1 SINE Alu 0 148 141 5 1533 198 0 0 0 chr1 124291246 124291268 -72904164 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1533 1074 70 0 27 chr1 124291268 124291403 -72904029 - B1_Mus1 SINE Alu -8 140 6 5 1533 1250 239 57 7 chr1 124291410 124291692 -72903740 + MTE2b LTR MaLR 62 357 -22 5 1533 230 143 20 0 chr1 124291910 124291959 -72903473 + (TGAG)n Simple_repeat Simple_repeat 1 50 0 5 1533 784 173 202 0 chr1 124291976 124292149 -72903283 - MTB LTR MaLR 0 400 193 5 1533 2314 88 61 40 chr1 124292150 124292664 -72902768 - L1_Mus3 LINE L1 0 6638 6244 5 1533 1199 88 6 0 chr1 124292669 124292840 -72902592 + L1_Mus3 LINE L1 6037 6208 -430 5 1533 608 232 219 0 chr1 124292840 124293034 -72902398 - MTB LTR MaLR -170 251 1 5 1533 249 330 86 9 chr1 124293098 124293214 -72902218 - MIR SINE MIR -108 154 30 5 1533 360 0 0 0 chr1 124293347 124293387 -72902045 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1533 461 322 0 46 chr1 124293392 124293502 -72901930 - B3A SINE B2 -52 146 43 5 1533 1491 217 49 67 chr1 124293502 124293892 -72901540 + ORR1C2 LTR MaLR 2 384 0 5 1533 461 322 0 46 chr1 124293892 124293934 -72901498 - B3A SINE B2 -156 42 1 5 1533 279 263 167 15 chr1 124294134 124294220 -72901212 + B1F1 SINE Alu 41 136 -13 5 1533 648 302 161 55 chr1 124294745 124295074 -72900358 - MTE2a LTR MaLR -15 364 1 5 1533 288 0 0 0 chr1 124295598 124295630 -72899802 + (TTTTTG)n Simple_repeat Simple_repeat 6 37 0 5 1533 911 93 28 35 chr1 124295630 124295775 -72899657 - B1_Mus1 SINE Alu 0 148 5 5 1533 697 261 134 9 chr1 124296355 124296579 -72898853 - RMER15 LTR ERVL -87 488 237 5 1533 290 273 68 0 chr1 124296602 124296690 -72898742 - RMER15 LTR ERVL -444 131 38 5 1533 3810 138 3 11 chr1 124296727 124297342 -72898090 - Lx3A LINE L1 -11 6970 6361 5 1533 7932 102 26 31 chr1 124297342 124298664 -72896768 + Lx3_Mus LINE L1 4597 5906 -1103 5 1533 180 0 0 0 chr1 124298664 124298684 -72896748 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1533 4074 128 82 20 chr1 124298684 124299127 -72896305 + Lx3_Mus LINE L1 5907 6376 -633 5 1533 5674 78 13 0 chr1 124299122 124299965 -72895467 + L1_Mur1 LINE L1 3709 4562 -1324 5 1533 670 313 0 12 chr1 124300047 124300212 -72895220 + RSINE1 SINE B4 3 165 0 5 1533 31 0 0 0 chr1 124300212 124300243 -72895189 + AT_rich Low_complexity Low_complexity 1 31 0 5 1533 352 288 90 0 chr1 124301371 124301548 -72893884 + L1MC3 LINE L1 7339 7531 -254 5 1533 196 216 113 38 chr1 124301652 124301705 -72893727 - L2 LINE L2 -3289 130 74 5 1533 928 302 110 12 chr1 124302043 124302298 -72893134 + B4A SINE B4 9 288 -4 6 1533 504 95 0 0 chr1 124302969 124303053 -72892379 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1533 231 103 0 0 chr1 124303057 124303096 -72892336 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1533 527 289 120 47 chr1 124303108 124303366 -72892066 + B4 SINE B4 1 277 -15 6 1533 221 247 0 10 chr1 124303398 124303496 -72891936 + (CA)n Simple_repeat Simple_repeat 2 98 0 6 1533 546 331 5 33 chr1 124303607 124303791 -72891641 + B3A SINE B2 2 180 -18 6 1533 376 282 0 0 chr1 124304155 124304233 -72891199 + B4 SINE B4 8 85 -207 6 1533 485 223 123 0 chr1 124304244 124304374 -72891058 + B3 SINE B2 59 204 -12 6 1533 743 281 5 53 chr1 124304384 124304591 -72890841 + B4 SINE B4 84 280 -12 6 1533 495 0 0 0 chr1 124304602 124304657 -72890775 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1533 750 64 0 0 chr1 124304657 124304765 -72890667 + (GA)n Simple_repeat Simple_repeat 2 110 0 6 1533 631 294 48 0 chr1 124305410 124305597 -72889835 + B3A SINE B2 3 198 0 6 1533 3102 81 5 0 chr1 124305654 124306073 -72889359 - BGLII LTR ERVK 0 421 1 6 1533 808 163 16 0 chr1 124306395 124306524 -72888908 + B1_Mur4 SINE Alu 1 131 -19 6 1533 184 91 0 43 chr1 124306529 124306575 -72888857 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 6 1533 530 305 132 0 chr1 124306899 124307066 -72888366 - B3A SINE B2 -6 192 4 6 1533 2045 28 4 4 chr1 124307315 124307562 -72887870 - L1Md_T LINE L1 0 6582 6336 6 1533 24 0 0 0 chr1 124307600 124307624 -72887808 + AT_rich Low_complexity Low_complexity 1 24 0 6 1533 959 247 32 60 chr1 124307713 124308150 -72887282 - MTEb LTR MaLR -5 414 7 6 1533 943 301 0 4 chr1 124308147 124308374 -72887058 - B4A SINE B4 -65 227 2 6 1533 189 0 0 0 chr1 124308738 124308759 -72886673 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1533 1120 218 38 44 chr1 124308860 124309027 -72886405 - Lx7 LINE L1 0 7696 7536 6 1533 414 0 0 0 chr1 124309027 124309073 -72886359 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1533 1120 218 38 44 chr1 124309073 124309246 -72886186 - Lx7 LINE L1 -161 7535 7358 6 1533 220 216 0 0 chr1 124309260 124309311 -72886121 + A-rich Low_complexity Low_complexity 3 53 0 6 1533 1639 257 41 20 chr1 124309315 124309804 -72885628 - Lx7 LINE L1 -329 7367 6869 6 1533 626 204 28 7 chr1 124309824 124309967 -72885465 - Lx7 LINE L1 -904 6792 6647 6 1533 1948 213 60 5 chr1 124310303 124310733 -72884699 - Lx6 LINE L1 -818 6642 6189 6 1533 414 0 0 0 chr1 124310743 124310789 -72884643 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1533 13430 179 30 52 chr1 124310789 124311180 -72884252 - Lx6 LINE L1 -119 5761 5378 6 1533 2788 201 23 12 chr1 124311180 124311749 -72883683 + RMER15 LTR ERVL 1 575 0 6 1533 13430 179 30 52 chr1 124311749 124314599 -72880833 - Lx6 LINE L1 -503 5377 2591 6 1533 469 245 36 28 chr1 124314599 124314774 -72880658 + ORR1B2 LTR MaLR 2 146 -248 6 1533 786 208 61 5 chr1 124314808 124314982 -72880450 + ORR1B2 LTR MaLR 55 221 -146 6 1533 346 312 31 0 chr1 124314965 124315061 -72880371 + RSINE1 SINE B4 67 165 0 6 1533 1650 209 33 22 chr1 124315705 124316068 -72879364 - ORR1B2 LTR MaLR 0 367 1 6 1533 4061 65 45 2 chr1 124316235 124316773 -72878659 + L1_Mus1 LINE L1 6007 6567 0 6 1533 550 285 48 146 chr1 124316819 124317238 -72878194 - MTE2b LTR MaLR 0 379 2 6 1533 493 226 48 0 chr1 124317428 124317552 -72877880 + Lx7 LINE L1 7205 7334 -362 6 1533 8305 18 0 0 chr1 124317542 124318792 -72876640 - L1Md_A LINE L1 0 6582 5333 6 1533 35 41 0 0 chr1 124318852 124318901 -72876531 + AT_rich Low_complexity Low_complexity 1 49 0 6 1533 3976 152 20 6 chr1 124318911 124319598 -72875834 - Lx LINE L1 -8 6646 5950 6 1533 1029 196 41 88 chr1 124319619 124319938 -72875494 + Lx7 LINE L1 7377 7680 -16 6 1533 311 319 178 6 chr1 124320241 124320421 -72875011 - MIRb SINE MIR -20 248 38 6 1533 301 272 211 10 chr1 124320588 124320692 -72874740 + B1_Mur1 SINE Alu 13 137 -12 6 1533 492 239 26 0 chr1 124321304 124321417 -72874015 + MTD LTR MaLR 1 116 -303 6 1533 357 24 0 0 chr1 124321417 124321459 -72873973 + (TTG)n Simple_repeat Simple_repeat 1 42 0 6 1533 338 256 98 76 chr1 124321459 124321531 -72873901 + MTD LTR MaLR 124 194 -213 6 1533 870 128 135 0 chr1 124321531 124321687 -72873745 + B2_Mm1t SINE B2 1 177 -16 6 1533 319 280 102 63 chr1 124321687 124321706 -72873726 + MTD LTR MaLR 195 214 -193 6 1533 303 28 0 0 chr1 124321706 124321742 -72873690 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1533 396 138 11 33 chr1 124321737 124321827 -72873605 + GA-rich Low_complexity Low_complexity 2 89 0 6 1533 337 305 67 17 chr1 124321860 124321997 -72873435 + MTD LTR MaLR 277 420 -1 6 1533 292 280 104 14 chr1 124322256 124322477 -72872955 - L1MA6 LINE L1 -2 6298 6058 6 1533 1751 142 40 11 chr1 124322560 124322916 -72872516 - ORR1A4 LTR MaLR 0 394 1 6 1533 35 0 0 0 chr1 124322934 124322969 -72872463 + AT_rich Low_complexity Low_complexity 1 35 0 6 1533 22 70 0 0 chr1 124323023 124323066 -72872366 + AT_rich Low_complexity Low_complexity 1 43 0 6 1533 525 311 121 72 chr1 124323136 124323491 -72871941 + MTE2a LTR MaLR 39 405 -14 6 1533 227 310 31 103 chr1 124323867 124323964 -72871468 + B1_Mus1 SINE Alu 25 114 -34 6 1533 446 290 37 22 chr1 124324262 124324396 -72871036 + B4A SINE B4 2 137 -155 6 1533 339 25 0 0 chr1 124324406 124324446 -72870986 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1533 1723 267 78 37 chr1 124326044 124326558 -72868874 + RMER15 LTR ERVL 27 561 -14 6 1533 327 361 0 0 chr1 124326798 124326906 -72868526 - ID_B1 SINE B4 -5 219 112 6 1533 1008 250 77 56 chr1 124326914 124327425 -72868007 - RMER4B LTR ERVK -11 574 17 6 1533 380 318 73 0 chr1 124327433 124327543 -72867889 - ID_B1 SINE B4 -101 123 6 6 1533 2602 179 11 2 chr1 124328128 124328577 -72866855 + RMER6B LTR ERVK 1 453 -8 6 1533 1633 201 60 99 chr1 124328656 124329038 -72866394 + ORR1C1 LTR MaLR 1 378 0 6 1533 254 167 33 16 chr1 124329229 124329290 -72866142 + GA-rich Low_complexity Low_complexity 2 63 0 6 1533 316 335 109 21 chr1 124330514 124330706 -72864726 + L1MEg LINE L1 476 684 -5400 6 1533 404 308 110 23 chr1 124330738 124330957 -72864475 - L1M4 LINE L1 -887 5259 5022 6 1533 840 271 19 5 chr1 124330971 124331157 -72864275 + B3 SINE B2 1 190 -26 6 1533 495 0 0 0 chr1 124331157 124331212 -72864220 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 6 1533 840 271 19 5 chr1 124331212 124331236 -72864196 + B3 SINE B2 191 214 -2 6 1533 25 0 0 0 chr1 124331248 124331273 -72864159 + AT_rich Low_complexity Low_complexity 1 25 0 6 1533 321 255 72 26 chr1 124331281 124331474 -72863958 + L1MA4 LINE L1 5295 5496 -804 6 1533 315 0 0 0 chr1 124331529 124331564 -72863868 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1533 282 296 162 5 chr1 124331644 124331775 -72863657 + L1MA4 LINE L1 5662 5810 -490 6 1533 444 37 0 0 chr1 124331775 124331829 -72863603 + (TAA)n Simple_repeat Simple_repeat 1 54 0 6 1533 282 296 162 5 chr1 124331829 124331901 -72863531 + L1MA4 LINE L1 5811 5896 -404 6 1533 4046 120 40 63 chr1 124332043 124332808 -72862624 + Lx3_Mus LINE L1 5590 6337 -672 6 1533 1497 135 3 87 chr1 124332808 124333108 -72862324 + Lx3_Mus LINE L1 6696 6970 -11 6 1533 2189 96 0 6 chr1 124334123 124334436 -72860996 - L1_Mus4 LINE L1 -6 6630 6320 6 1533 454 264 239 0 chr1 124334455 124334619 -72860813 + B3A SINE B2 6 208 -8 6 1533 506 295 16 54 chr1 124335558 124335687 -72859745 + RSINE1 SINE B4 3 126 -39 6 1533 219 69 0 0 chr1 124335699 124335728 -72859704 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 6 1533 216 269 0 0 chr1 124335729 124335781 -72859651 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6 1533 626 276 0 18 chr1 124335925 124336091 -72859341 - B4A SINE B4 -2 290 128 6 1533 608 287 9 97 chr1 124336074 124336290 -72859142 - B3 SINE B2 -19 197 1 6 1533 753 12 0 0 chr1 124337359 124337445 -72857987 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 1533 503 107 12 0 chr1 124337953 124338037 -72857395 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 6 1533 341 223 65 18 chr1 124338148 124338317 -72857115 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 6 1533 1680 248 47 12 chr1 124338330 124338734 -72856698 - MTD LTR MaLR -1 418 1 6 1533 525 58 0 0 chr1 124338784 124338853 -72856579 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1533 203 61 30 0 chr1 124339062 124339095 -72856337 + (TTCTG)n Simple_repeat Simple_repeat 2 35 0 6 1533 196 131 21 21 chr1 124339779 124339826 -72855606 + CT-rich Low_complexity Low_complexity 2 48 0 6 1533 503 304 69 42 chr1 124340055 124340244 -72855188 - RMER30 DNA MER1_type -1 201 8 6 1533 36132 15 1 7 chr1 124340452 124345635 -72849797 + L1Md_A LINE L1 442 5586 -297 6 1533 8690 21 0 0 chr1 124345635 124346631 -72848801 + L1Md_A LINE L1 5587 6582 0 6 1533 228 67 0 0 chr1 124346693 124346723 -72848709 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1533 933 264 63 110 chr1 124347186 124347569 -72847863 - MTE2a LTR MaLR -14 365 1 6 1533 24 0 0 0 chr1 124347673 124347697 -72847735 + AT_rich Low_complexity Low_complexity 1 24 0 6 1533 22 0 0 0 chr1 124347749 124347771 -72847661 + AT_rich Low_complexity Low_complexity 1 22 0 6 1533 379 365 16 8 chr1 124348471 124348598 -72846834 - RSINE1 SINE B4 -36 129 2 6 1533 22 0 0 0 chr1 124348600 124348622 -72846810 + AT_rich Low_complexity Low_complexity 1 22 0 6 1533 1078 247 84 14 chr1 124348763 124349108 -72846324 - ORR1D2 LTR MaLR 0 370 2 6 1533 1114 274 28 112 chr1 124349260 124349651 -72845781 - ORR1E LTR MaLR 0 359 2 6 1533 369 0 0 0 chr1 124350715 124350756 -72844676 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1533 507 298 84 30 chr1 124350758 124351021 -72844411 - B4A SINE B4 -14 278 2 6 1533 21 0 0 0 chr1 124351139 124351160 -72844272 + AT_rich Low_complexity Low_complexity 1 21 0 6 1533 2063 215 48 20 chr1 124352447 124352950 -72842482 - Lx5 LINE L1 -3 7047 6531 6 1533 1000 116 0 0 chr1 124352987 124353125 -72842307 + B1_Mus1 SINE Alu 1 138 -10 6 1533 444 51 0 0 chr1 124353125 124353184 -72842248 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1533 1270 129 0 0 chr1 124353470 124353671 -72841761 - L1_Mus3 LINE L1 -132 6506 6306 6 1533 1072 110 12 0 chr1 124353673 124353837 -72841595 + L1_Mus3 LINE L1 5777 5942 -696 6 1533 6114 123 5 1 chr1 124353840 124355255 -72840177 - L1_Mus3 LINE L1 -351 6287 4868 6 1533 1468 146 8 0 chr1 124355254 124355514 -72839918 + L1_Mus3 LINE L1 4598 4859 -1024 6 1533 208 161 32 0 chr1 124356202 124356264 -72839168 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 6 1533 1060 294 48 40 chr1 124356576 124356952 -72838480 - MTEa LTR MaLR 0 379 1 6 1533 287 344 80 80 chr1 124357308 124357520 -72837912 + RMER2 LTR ERV1 329 540 -27 6 1533 445 369 8 0 chr1 124357591 124357721 -72837711 + RSINE1 SINE B4 25 155 -10 7 1533 31 44 0 0 chr1 124357794 124357839 -72837593 + AT_rich Low_complexity Low_complexity 1 45 0 7 1533 1116 65 0 0 chr1 124357897 124358036 -72837396 + B1_Mus1 SINE Alu 1 139 -9 7 1533 180 0 0 0 chr1 124358050 124358070 -72837362 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 7 1533 690 279 13 0 chr1 124358418 124358576 -72836856 + MTEa LTR MaLR 77 236 -143 7 1533 818 132 66 0 chr1 124358722 124358873 -72836559 - Lx LINE L1 -7 6647 6487 7 1533 5027 115 9 0 chr1 124358873 124359638 -72835794 + Lx LINE L1 5711 6482 -172 7 1533 612 293 141 16 chr1 124360148 124360339 -72835093 - B4 SINE B4 -77 215 1 7 1533 995 285 174 22 chr1 124361059 124361420 -72834012 + MTD LTR MaLR 1 416 -3 7 1533 959 256 48 138 chr1 124361596 124362009 -72833423 + MTE2a LTR MaLR 4 379 0 7 1533 457 301 24 0 chr1 124362216 124362339 -72833093 - ID_B1 SINE B4 -6 218 93 7 1533 286 274 83 111 chr1 124362724 124362868 -72832564 - ID_B1 SINE B4 -80 144 5 7 1533 201 139 56 0 chr1 124362967 124363003 -72832429 + L2a LINE L2 2301 2338 -1081 7 1533 4751 143 82 13 chr1 124363019 124364215 -72831217 - L1_Mus4 LINE L1 0 6636 5360 7 1533 427 292 144 42 chr1 124364374 124364610 -72830822 + L2a LINE L2 2562 2821 -598 7 1533 236 374 33 66 chr1 124364907 124365090 -72830342 + L2a LINE L2 3225 3401 -25 7 1533 38 39 0 0 chr1 124365526 124365578 -72829854 + AT_rich Low_complexity Low_complexity 1 52 0 7 1533 827 247 57 0 chr1 124366131 124366325 -72829107 - B3 SINE B2 -6 210 6 7 1533 453 271 138 8 chr1 124366510 124366633 -72828799 + B3A SINE B2 1 139 -59 7 1533 782 233 63 90 chr1 124367193 124367415 -72828017 - B3 SINE B2 0 216 1 7 1533 936 294 38 4 chr1 124367603 124367866 -72827566 + B4A SINE B4 2 273 -19 7 1533 462 88 0 0 chr1 124368412 124368480 -72826952 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1533 307 358 60 13 chr1 124369256 124369406 -72826026 - RMER15 LTR ERVL -16 559 403 7 1533 291 318 0 0 chr1 124369592 124369677 -72825755 - Lx8 LINE L1 -360 7113 7029 7 1533 559 178 189 0 chr1 124369799 124369979 -72825453 - Lx9 LINE L1 0 7644 7431 7 1533 940 269 128 3 chr1 124369980 124370293 -72825139 + MTEb LTR MaLR 22 373 -6 7 1533 412 320 10 0 chr1 124370949 124371052 -72824380 - RSINE1 SINE B4 -58 107 4 7 1533 315 373 24 42 chr1 124371441 124371606 -72823826 - RSINE1 SINE B4 -1 164 3 7 1533 719 263 6 34 chr1 124372022 124372199 -72823233 + B3A SINE B2 11 182 -16 7 1533 180 77 0 0 chr1 124372215 124372241 -72823191 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1533 635 294 69 3 chr1 124372720 124373010 -72822422 - L1ME2 LINE L1 -194 5970 5662 7 1533 309 344 0 0 chr1 124373039 124373135 -72822297 + (TA)n Simple_repeat Simple_repeat 1 96 0 7 1533 203 120 80 0 chr1 124373697 124373747 -72821685 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 7 1533 819 286 25 139 chr1 124373923 124374380 -72821052 - MTE2b LTR MaLR 0 419 6 7 1533 524 84 12 0 chr1 124375136 124375219 -72820213 + (TC)n Simple_repeat Simple_repeat 2 85 0 7 1533 243 88 0 0 chr1 124375219 124375253 -72820179 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1533 470 273 132 15 chr1 124375271 124375468 -72819964 + B4 SINE B4 4 223 -69 7 1533 404 15 62 0 chr1 124375521 124375586 -72819846 + (CAAAA)n Simple_repeat Simple_repeat 4 72 0 7 1533 22 0 0 0 chr1 124375956 124375978 -72819454 + AT_rich Low_complexity Low_complexity 1 22 0 7 1533 1058 211 9 5 chr1 124376348 124376572 -72818860 + URR1B DNA MER1_type 1 225 0 7 1533 223 49 24 24 chr1 124377601 124377643 -72817789 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 7 1533 392 67 17 0 chr1 124377743 124377803 -72817629 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1533 211 140 23 23 chr1 124377990 124378034 -72817398 + GA-rich Low_complexity Low_complexity 1 44 0 7 1533 441 0 0 0 chr1 124378887 124378936 -72816496 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1533 499 351 52 33 chr1 124378977 124379248 -72816184 - B4A SINE B4 -14 278 3 7 1533 290 266 0 8 chr1 124379255 124379384 -72816048 + CT-rich Low_complexity Low_complexity 3 130 0 7 1533 28 0 0 0 chr1 124379697 124379725 -72815707 + AT_rich Low_complexity Low_complexity 1 28 0 7 1533 2335 80 9 69 chr1 124380333 124380681 -72814751 + ORR1A2 LTR MaLR 1 327 0 7 1533 221 244 0 0 chr1 124381387 124381432 -72814000 + (CAT)n Simple_repeat Simple_repeat 1 45 0 7 1533 651 288 93 31 chr1 124381477 124381735 -72813697 - B4A SINE B4 -13 279 6 7 1533 203 304 0 0 chr1 124381957 124382013 -72813419 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1533 314 301 55 12 chr1 124382626 124382791 -72812641 - Lx8 LINE L1 -28 7445 7274 7 1533 556 321 60 7 chr1 124382823 124383105 -72812327 - Lx8 LINE L1 -256 7217 6921 7 1533 558 200 33 40 chr1 124383752 124383903 -72811529 + RMER15 LTR ERVL 325 474 -101 7 1533 575 325 10 15 chr1 124384236 124384433 -72810999 - B3A SINE B2 0 198 3 7 1533 424 280 0 51 chr1 124385150 124385248 -72810184 + RSINE1 SINE B4 4 96 -69 7 1533 279 71 0 0 chr1 124385248 124385290 -72810142 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1533 2678 207 125 20 chr1 124385429 124386262 -72809170 - Lx9 LINE L1 -7 7637 6718 7 1533 1355 276 61 33 chr1 124386507 124386997 -72808435 - RMER5 LTR ERV1 -30 504 1 7 1534 440 264 27 95 chr1 124387338 124387560 -72807872 + L1M4 LINE L1 14 220 -6322 7 1534 667 303 70 11 chr1 124387630 124387684 -72807748 - B4 SINE B4 -6 286 233 7 1534 558 0 0 0 chr1 124387684 124387746 -72807686 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1534 667 303 70 11 chr1 124387746 124387961 -72807471 - B4 SINE B4 -60 232 2 7 1534 496 252 15 16 chr1 124388079 124388189 -72807243 + ID_B1 SINE B4 1 109 -183 7 1534 639 65 32 0 chr1 124388189 124388282 -72807150 - L1_Mus2 LINE L1 -594 5972 5877 7 1534 250 31 0 0 chr1 124388282 124388314 -72807118 - L1Md_F3 LINE L1 -678 5906 5875 7 1534 8554 82 2 7 chr1 124388324 124389391 -72806041 - L1Md_F2 LINE L1 -221 6361 5308 7 1534 4596 63 2 2 chr1 124389391 124389975 -72805457 - L1Md_F2 LINE L1 -8 6574 5991 7 1534 8554 80 2 11 chr1 124389975 124390607 -72804825 - L1Md_F2 LINE L1 -576 5307 4673 7 1534 2611 206 62 16 chr1 124390607 124391185 -72804247 + RMER6D LTR ERVK 116 720 0 7 1534 434 303 30 49 chr1 124391192 124391365 -72804067 - Lx8 LINE L1 -1032 6441 6272 7 1534 2679 58 9 0 chr1 124391365 124391709 -72803723 - L1Md_F2 LINE L1 0 6582 6236 7 1534 434 303 30 49 chr1 124391709 124391802 -72803630 - Lx8 LINE L1 -1202 6271 6180 7 1534 22 0 0 0 chr1 124391969 124391991 -72803441 + AT_rich Low_complexity Low_complexity 1 22 0 7 1534 487 319 193 21 chr1 124392072 124392264 -72803168 + B4A SINE B4 56 280 -12 7 1534 342 0 0 0 chr1 124392291 124392329 -72803103 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1534 276 53 0 0 chr1 124392329 124392366 -72803066 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1534 393 244 13 0 chr1 124392402 124392480 -72802952 + ID_B1 SINE B4 137 215 -9 7 1534 664 304 19 63 chr1 124393289 124393496 -72801936 - B3A SINE B2 0 198 1 7 1534 23 54 0 0 chr1 124395498 124395535 -72799897 + AT_rich Low_complexity Low_complexity 1 37 0 7 1534 402 321 81 37 chr1 124395574 124395855 -72799577 + B4 SINE B4 9 270 -22 7 1534 360 0 0 0 chr1 124395948 124395988 -72799444 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1534 286 346 79 0 chr1 124396028 124396155 -72799277 + MIR SINE MIR 7 143 -119 7 1534 651 264 26 57 chr1 124396697 124396890 -72798542 - B3A SINE B2 -10 188 2 7 1534 479 271 153 11 chr1 124397560 124397750 -72797682 + ID_B1 SINE B4 2 218 -6 7 1534 213 240 0 0 chr1 124398285 124398335 -72797097 + A-rich Low_complexity Low_complexity 1 50 0 7 1534 748 268 6 12 chr1 124398982 124399148 -72796284 - B3A SINE B2 -31 167 3 7 1534 443 233 18 64 chr1 124399244 124399354 -72796078 - RSINE1 SINE B4 -49 116 12 7 1534 185 23 20 102 chr1 124399460 124399509 -72795923 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1534 464 311 19 45 chr1 124399684 124399823 -72795609 + RSINE1 SINE B4 15 151 -14 7 1534 351 0 0 0 chr1 124399823 124399862 -72795570 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1534 741 79 0 0 chr1 124399862 124399962 -72795470 + (TA)n Simple_repeat Simple_repeat 1 101 0 7 1534 464 311 19 45 chr1 124399962 124399976 -72795456 + RSINE1 SINE B4 152 164 -1 7 1534 279 243 14 14 chr1 124399990 124400061 -72795371 + MLT1A1 LTR MaLR 85 155 -253 7 1534 701 252 79 105 chr1 124400071 124400452 -72794980 - RMER20B LTR ERVK -23 604 234 7 1534 315 65 0 0 chr1 124400872 124400918 -72794514 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1534 370 326 18 121 chr1 124400945 124401168 -72794264 - B4A SINE B4 -68 224 25 7 1534 1438 263 39 65 chr1 124402175 124402561 -72792871 - MTEa LTR MaLR -3 376 1 7 1534 1128 266 40 93 chr1 124402868 124403266 -72792166 + MTE2a LTR MaLR 1 377 -2 7 1534 325 247 74 21 chr1 124403646 124403741 -72791691 - RMER10A LTR ERVL -25 417 318 7 1534 517 319 67 49 chr1 124403805 124404089 -72791343 - RMER10A LTR ERVL -142 300 12 7 1534 486 305 70 38 chr1 124404095 124404252 -72791180 + RSINE1 SINE B4 4 165 0 7 1534 307 360 24 0 chr1 124404296 124404421 -72791011 + B1F SINE Alu 5 132 -17 7 1534 3897 138 51 60 chr1 124404426 124404537 -72790895 - L1_Mm LINE L1 -21 5862 5792 7 1534 1196 42 14 0 chr1 124404537 124404681 -72790751 - B1_Mm SINE Alu 0 147 2 7 1534 3897 138 51 60 chr1 124404681 124405353 -72790079 - L1_Mus4 LINE L1 -92 5791 5086 7 1534 5183 111 8 3 chr1 124405356 124406109 -72789323 + L1_Mus4 LINE L1 5870 6626 -10 7 1534 488 315 109 0 chr1 124406149 124406314 -72789118 + B3A SINE B2 1 183 -15 7 1534 991 289 75 36 chr1 124406404 124406760 -72788672 - ORR1D2 LTR MaLR -5 365 1 7 1534 769 214 25 0 chr1 124407126 124407285 -72788147 + U1 snRNA snRNA 2 164 -1 7 1534 544 295 95 12 chr1 124407314 124407482 -72787950 + B3A SINE B2 1 182 -16 7 1534 288 77 0 0 chr1 124407488 124407527 -72787905 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1534 399 68 0 0 chr1 124407579 124407638 -72787794 + (TATG)n Simple_repeat Simple_repeat 2 60 0 8 1534 4344 22 0 0 chr1 124407796 124408289 -72787143 - MT2_Mm LTR ERVL 0 493 1 8 1534 306 0 0 0 chr1 124408408 124408442 -72786990 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1534 738 311 14 14 chr1 124408442 124408651 -72786781 - B4 SINE B4 -50 242 34 8 1534 226 87 0 42 chr1 124408852 124408900 -72786532 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 8 1534 212 344 32 32 chr1 124409011 124409104 -72786328 + RSINE1 SINE B4 23 115 -50 8 1534 225 215 53 11 chr1 124409104 124409198 -72786234 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 8 1534 1604 220 78 25 chr1 124409493 124409890 -72785542 - MTC LTR MaLR -2 419 2 8 1534 286 80 40 0 chr1 124410030 124410080 -72785352 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 8 1534 233 214 24 0 chr1 124410264 124410306 -72785126 + B1F2 SINE Alu 21 63 -86 8 1534 619 356 27 18 chr1 124410381 124410601 -72784831 + B4A SINE B4 53 274 -18 8 1534 351 0 0 0 chr1 124410622 124410661 -72784771 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1534 266 234 0 30 chr1 124411366 124411432 -72784000 + B3A SINE B2 12 75 -123 8 1534 262 289 33 0 chr1 124411497 124411587 -72783845 - RMER15 LTR ERVL -63 512 420 8 1534 3980 117 8 15 chr1 124411903 124412509 -72782923 - L1_Mus4 LINE L1 -2 6634 6033 8 1534 1223 252 65 6 chr1 124412862 124413213 -72782219 - MTEa LTR MaLR -3 376 5 8 1534 222 37 0 0 chr1 124414549 124414576 -72780856 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 8 1534 603 214 34 0 chr1 124414717 124414742 -72780690 + ID SINE ID 54 82 -142 8 1534 284 264 38 90 chr1 124414742 124414875 -72780557 + B1_Mm SINE Alu 1 126 -21 8 1534 361 312 83 76 chr1 124414970 124415060 -72780372 - RMER21A LTR ERV1 -317 630 538 8 1534 369 0 0 0 chr1 124415060 124415101 -72780331 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1534 361 312 83 76 chr1 124415101 124415298 -72780134 - RMER21A LTR ERV1 -410 537 341 8 1534 235 346 99 0 chr1 124416627 124416728 -72778704 - PB1 SINE Alu -2 125 15 8 1534 3396 163 81 31 chr1 124416751 124417295 -72778137 + RMER6A LTR ERVK 1 575 -181 8 1534 750 60 0 0 chr1 124417295 124417395 -72778037 + (CA)n Simple_repeat Simple_repeat 1 100 0 8 1534 3396 163 81 31 chr1 124417395 124417570 -72777862 + RMER6A LTR ERVK 576 755 -1 8 1534 23 0 0 0 chr1 124417791 124417814 -72777618 + AT_rich Low_complexity Low_complexity 1 23 0 8 1534 3573 64 68 0 chr1 124417927 124418397 -72777035 - L1_Mus1 LINE L1 0 6567 6066 8 1534 189 0 0 0 chr1 124418399 124418420 -72777012 + (TTTCC)n Simple_repeat Simple_repeat 3 23 0 8 1534 474 138 10 41 chr1 124418617 124418715 -72776717 + Lx3C LINE L1 6882 6976 0 8 1534 723 136 0 9 chr1 124418730 124418841 -72776591 + RLTR20C LTR ERVK 325 434 -100 8 1534 573 15 0 0 chr1 124418855 124418921 -72776511 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1534 315 287 0 11 chr1 124418940 124419028 -72776404 + B3A SINE B2 106 192 -6 8 1534 215 175 18 0 chr1 124419696 124419753 -72775679 + (CAT)n Simple_repeat Simple_repeat 1 58 0 8 1534 598 287 19 0 chr1 124419759 124419916 -72775516 - MTEb LTR MaLR 0 379 220 8 1534 250 279 104 91 chr1 124420185 124420339 -72775093 - MIRm SINE MIR -115 161 6 8 1534 911 297 22 85 chr1 124420460 124420732 -72774700 - B4A SINE B4 -35 257 3 8 1534 7150 200 44 31 chr1 124420845 124422274 -72773158 + L1_Mur2 LINE L1 638 2048 -3829 8 1534 612 42 10 20 chr1 124422274 124422372 -72773060 + (TC)n Simple_repeat Simple_repeat 1 97 0 8 1534 7150 164 39 41 chr1 124422372 124422384 -72773048 + L1_Mur2 LINE L1 2049 2060 -3817 8 1534 441 0 0 0 chr1 124422384 124422433 -72772999 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1534 7150 164 39 41 chr1 124422433 124423223 -72772209 + L1_Mur2 LINE L1 2061 2882 -2995 8 1534 850 151 18 0 chr1 124423225 124423391 -72772041 + GA-rich Low_complexity Low_complexity 3 171 0 8 1534 611 60 12 0 chr1 124423391 124423475 -72771957 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 1534 325 279 29 0 chr1 124423521 124423589 -72771843 + RSINE1 SINE B4 68 137 -28 8 1534 432 104 0 0 chr1 124423592 124423659 -72771773 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1534 385 345 52 17 chr1 124424088 124424262 -72771170 - L1ME2 LINE L1 -164 6000 5821 8 1534 205 105 0 73 chr1 124424263 124424304 -72771128 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8 1534 907 263 43 114 chr1 124424572 124425007 -72770425 + MTE2a LTR MaLR 1 407 -12 8 1534 587 278 113 5 chr1 124425079 124425274 -72770158 - ID_B1 SINE B4 -8 216 1 8 1534 216 393 12 0 chr1 124425312 124425396 -72770036 - B1_Mus1 SINE Alu -46 102 18 8 1534 884 324 24 31 chr1 124425494 124425787 -72769645 - B4 SINE B4 0 292 2 8 1534 225 333 131 0 chr1 124425804 124425903 -72769529 - PB1D7 SINE Alu -8 112 1 8 1534 216 122 0 0 chr1 124425982 124426023 -72769409 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1534 487 282 10 0 chr1 124426027 124426130 -72769302 - RSINE1 SINE B4 -4 161 58 8 1534 516 303 30 8 chr1 124426633 124426766 -72768666 + RSINE1 SINE B4 10 145 -20 8 1534 310 234 25 161 chr1 124427340 124427477 -72767955 + Lx7 LINE L1 7241 7359 -337 8 1534 182 37 0 36 chr1 124427477 124427505 -72767927 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1534 310 234 25 161 chr1 124427505 124427566 -72767866 + Lx7 LINE L1 7360 7412 -284 8 1534 228 254 0 14 chr1 124427622 124427694 -72767738 + Lx7 LINE L1 7605 7675 -21 8 1534 225 0 0 0 chr1 124427712 124427737 -72767695 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 8 1534 340 271 147 0 chr1 124427965 124428094 -72767338 - HAL1-3A_ME LINE L1 -419 2439 2292 8 1534 231 231 0 58 chr1 124428104 124428173 -72767259 + CT-rich Low_complexity Low_complexity 3 67 0 8 1534 724 263 53 5 chr1 124428578 124428742 -72766690 + B3A SINE B2 3 174 -24 8 1534 255 114 0 0 chr1 124428742 124428786 -72766646 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1534 724 263 53 5 chr1 124428786 124428808 -72766624 + B3A SINE B2 175 198 0 8 1534 6529 48 7 1 chr1 124428981 124429799 -72765633 - L1Md_F2 LINE L1 0 6582 5760 8 1534 240 122 0 0 chr1 124430814 124430855 -72764577 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1534 219 240 0 0 chr1 124430856 124430906 -72764526 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 8 1534 387 0 0 0 chr1 124430991 124431034 -72764398 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1534 216 0 0 0 chr1 124431210 124431234 -72764198 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1534 501 333 111 0 chr1 124432058 124432238 -72763194 + B4 SINE B4 79 278 -14 8 1534 342 0 0 0 chr1 124432265 124432303 -72763129 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1534 513 100 0 0 chr1 124432331 124432421 -72763011 + (GA)n Simple_repeat Simple_repeat 2 91 0 8 1534 21 0 0 0 chr1 124432497 124432518 -72762914 + AT_rich Low_complexity Low_complexity 1 21 0 8 1534 396 0 0 0 chr1 124432730 124432774 -72762658 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1534 342 0 0 0 chr1 124432774 124432811 -72762621 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1534 890 181 5 29 chr1 124433611 124433816 -72761616 + L1VL2 LINE L1 556 755 -5580 8 1534 1399 147 181 14 chr1 124433816 124434262 -72761170 + ETnERV3-int LTR ERVK 2954 3474 -3932 8 1534 6036 194 28 32 chr1 124434268 124435657 -72759775 + ETnERV3-int LTR ERVK 4396 5778 -30 8 1534 6995 87 55 2 chr1 124435672 124436653 -72758779 + RLTR13D4 LTR ERVK 1 1033 0 8 1534 4584 149 6 11 chr1 124436653 124437523 -72757909 + MusHAL1 LINE L1 788 1652 -1060 8 1534 258 105 0 0 chr1 124438169 124438207 -72757225 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1534 489 34 0 0 chr1 124438210 124438269 -72757163 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1534 575 312 84 7 chr1 124438282 124438437 -72756995 - B4 SINE B4 -124 168 2 8 1534 290 368 45 89 chr1 124438439 124438663 -72756769 - LTR40a LTR ERVL -25 494 281 8 1534 330 26 0 0 chr1 124438731 124438770 -72756662 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1534 882 239 45 5 chr1 124438771 124438973 -72756459 + B3 SINE B2 7 216 0 8 1534 672 203 55 0 chr1 124438999 124439127 -72756305 + B1_Mm SINE Alu 13 147 0 8 1534 358 323 53 23 chr1 124439461 124439594 -72755838 + B1F SINE Alu 12 148 -1 8 1534 499 328 87 43 chr1 124439701 124439860 -72755572 + B3A SINE B2 1 171 -27 8 1534 591 94 0 0 chr1 124439860 124439956 -72755476 + (CA)n Simple_repeat Simple_repeat 2 97 0 8 1534 499 328 87 43 chr1 124439956 124439981 -72755451 + B3A SINE B2 172 193 -5 8 1534 1037 44 82 0 chr1 124440766 124440901 -72754531 + B1_Mus2 SINE Alu 2 147 0 8 1534 347 237 114 8 chr1 124441107 124441239 -72754193 + L1MA6 LINE L1 6118 6263 -37 8 1534 429 290 109 4 chr1 124441481 124441720 -72753712 - Lx9 LINE L1 -147 7497 7234 8 1534 621 238 12 6 chr1 124441719 124441888 -72753544 + Lx9 LINE L1 7073 7242 -402 8 1534 28 86 0 0 chr1 124441915 124441985 -72753447 + AT_rich Low_complexity Low_complexity 1 70 0 8 1534 37 52 0 0 chr1 124442001 124442059 -72753373 + AT_rich Low_complexity Low_complexity 1 58 0 8 1534 1383 273 71 20 chr1 124442384 124442777 -72752655 + MTD LTR MaLR 7 419 0 8 1534 306 385 27 89 chr1 124442823 124443048 -72752384 + B3 SINE B2 1 211 -5 8 1534 333 0 0 0 chr1 124443219 124443256 -72752176 + (TC)n Simple_repeat Simple_repeat 2 38 0 8 1534 800 337 32 8 chr1 124443361 124443609 -72751823 + B4 SINE B4 39 292 0 8 1534 314 294 22 45 chr1 124443968 124444057 -72751375 + RSINE1 SINE B4 74 160 -5 8 1534 1584 282 61 84 chr1 124444166 124444773 -72750659 + RMER19C LTR ERVK 1 593 -18 8 1534 735 327 54 0 chr1 124445121 124445326 -72750106 + B4A SINE B4 3 218 -74 8 1534 260 304 21 21 chr1 124446370 124446464 -72748968 + MER20 DNA MER1_type 2 95 -124 8 1534 356 267 22 0 chr1 124446517 124446607 -72748825 + B3A SINE B2 2 93 -105 8 1534 510 267 25 0 chr1 124446650 124446770 -72748662 - B3A SINE B2 -73 125 3 8 1534 321 47 0 0 chr1 124446986 124447029 -72748403 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1534 515 308 74 105 chr1 124447714 124448167 -72747265 - RMER15 LTR ERVL -5 570 2 9 1534 1075 282 140 8 chr1 124448911 124449268 -72746164 - MTD LTR MaLR -13 406 3 9 1534 26 82 0 0 chr1 124449326 124449387 -72746045 + AT_rich Low_complexity Low_complexity 1 61 0 9 1534 277 370 0 0 chr1 124449417 124449498 -72745934 + B1F SINE Alu 3 83 -66 9 1534 268 379 23 11 chr1 124449498 124449522 -72745910 + B4A SINE B4 88 200 -92 9 1534 2438 225 29 28 chr1 124449890 124450507 -72744925 + Lx2B LINE L1 6373 6990 -10 9 1534 21 0 0 0 chr1 124450507 124450528 -72744904 + AT_rich Low_complexity Low_complexity 1 21 0 9 1534 249 108 0 0 chr1 124450537 124450574 -72744858 + (CAATC)n Simple_repeat Simple_repeat 2 38 0 9 1534 948 280 68 66 chr1 124450727 124451139 -72744293 + RMER1B Other Other 45 538 -528 9 1534 293 280 40 63 chr1 124451107 124451233 -72744199 + RMER1B Other Other 373 495 -571 9 1534 2662 288 117 28 chr1 124451217 124451999 -72743433 + RMER1A Other Other 1 474 -556 9 1534 3448 33 0 0 chr1 124451999 124452395 -72743037 - MTA_Mm LTR MaLR 0 396 1 9 1534 2662 229 62 20 chr1 124452395 124453030 -72742402 + RMER1A Other Other 354 1016 -14 9 1534 394 327 96 30 chr1 124453051 124453218 -72742214 + B3 SINE B2 39 216 0 9 1534 403 248 177 39 chr1 124453961 124454091 -72741341 - RSINE1 SINE B4 -15 150 3 9 1534 16987 98 25 17 chr1 124454140 124456584 -72738848 + L1VL4 LINE L1 20 2515 -1044 9 1534 1095 139 0 0 chr1 124456584 124456764 -72738668 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1534 16987 91 19 25 chr1 124456764 124457836 -72737596 + L1VL4 LINE L1 2516 3555 -4 9 1534 857 116 7 0 chr1 124458304 124458450 -72736982 + (TC)n Simple_repeat Simple_repeat 1 147 0 9 1534 258 258 0 15 chr1 124458514 124458581 -72736851 + CT-rich Low_complexity Low_complexity 3 68 0 9 1534 264 125 42 0 chr1 124459335 124459383 -72736049 + Lx8 LINE L1 7413 7462 -11 9 1534 858 279 147 18 chr1 124459409 124459751 -72735681 - MTD LTR MaLR -13 408 5 9 1534 578 321 12 0 chr1 124460504 124460669 -72734763 + B3A SINE B2 2 168 -30 9 1534 522 183 0 0 chr1 124461405 124461487 -72733945 - B3A SINE B2 -116 82 1 9 1534 2725 162 25 2 chr1 124461524 124462050 -72733382 - L1_Mur2 LINE L1 -401 5476 4939 9 1534 590 213 166 60 chr1 124462159 124462394 -72733038 - RLTR40 LTR ERVK -339 478 219 9 1534 2013 188 64 129 chr1 124462395 124462754 -72732678 + Lx7 LINE L1 7017 7333 -363 9 1534 183 80 0 0 chr1 124462754 124462779 -72732653 + (TGG)n Simple_repeat Simple_repeat 1 25 0 9 1534 2013 188 64 129 chr1 124462779 124463139 -72732293 + Lx7 LINE L1 7334 7689 -7 9 1534 1185 185 46 101 chr1 124463152 124463304 -72732128 - RLTR40 LTR ERVK -527 290 143 9 1534 1247 21 0 0 chr1 124463304 124463447 -72731985 + B1_Mus2 SINE Alu 5 147 0 9 1534 1185 185 46 101 chr1 124463447 124463601 -72731831 - RLTR40 LTR ERVK -675 142 1 9 1534 745 309 52 52 chr1 124464092 124464123 -72731309 + B4 SINE B4 3 27 -265 9 1534 3012 76 0 10 chr1 124464123 124464522 -72730910 + MTA_Mm LTR MaLR 2 396 0 9 1534 745 309 52 52 chr1 124464522 124464780 -72730652 + B4 SINE B4 28 292 0 9 1534 387 0 0 0 chr1 124465990 124466033 -72729399 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1534 213 216 24 65 chr1 124466034 124466158 -72729274 + (CATA)n Simple_repeat Simple_repeat 1 119 0 9 1534 1309 227 222 17 chr1 124466168 124466511 -72728921 - MTC LTR MaLR -8 413 1 9 1534 347 194 18 35 chr1 124466520 124466691 -72728741 + (CA)n Simple_repeat Simple_repeat 1 168 0 9 1534 336 258 0 43 chr1 124466841 124466934 -72728498 + PB1 SINE Alu 23 111 -16 9 1534 5149 39 6 0 chr1 124467002 124467625 -72727807 - L1Md_F2 LINE L1 -8 6574 5948 9 1534 605 172 115 0 chr1 124467717 124467839 -72727593 + B3A SINE B2 2 137 -61 9 1534 388 113 0 0 chr1 124467845 124467898 -72727534 - HAL1-3A_ME LINE L1 -830 2028 1976 9 1534 201 196 0 0 chr1 124467899 124467945 -72727487 + (TATG)n Simple_repeat Simple_repeat 1 46 0 9 1534 458 274 37 31 chr1 124468410 124468572 -72726860 + RSINE1 SINE B4 3 165 0 9 1534 488 16 16 0 chr1 124468575 124468636 -72726796 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1534 1099 92 0 0 chr1 124468694 124468836 -72726596 + B1_Mus1 SINE Alu 2 143 -5 9 1534 21 57 0 0 chr1 124469046 124469081 -72726351 + AT_rich Low_complexity Low_complexity 1 35 0 9 1534 413 240 81 52 chr1 124469801 124469937 -72725495 - RSINE1 SINE B4 -25 140 1 9 1534 364 354 20 0 chr1 124469937 124470034 -72725398 + MER2 DNA MER2_type 244 342 -3 9 1534 359 336 9 0 chr1 124471030 124471146 -72724286 + PB1D10 SINE Alu 1 117 0 9 1534 888 82 0 0 chr1 124471298 124471420 -72724012 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 9 1534 501 314 12 30 chr1 124471895 124472059 -72723373 - RSINE1 SINE B4 -2 163 3 9 1534 393 181 261 11 chr1 124472362 124472477 -72722955 - Lx9 LINE L1 -6 7638 7484 9 1534 531 75 32 0 chr1 124472477 124472571 -72722861 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 9 1534 393 181 261 11 chr1 124472571 124472639 -72722793 - Lx9 LINE L1 -161 7483 7409 9 1534 864 188 144 98 chr1 124472652 124472929 -72722503 - RLTR25B LTR ERVK 0 1028 739 9 1534 207 71 71 0 chr1 124472929 124472971 -72722461 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1534 3409 190 109 25 chr1 124473287 124474082 -72721350 - RLTR25B LTR ERVK -166 862 1 9 1534 376 266 0 0 chr1 124474082 124474176 -72721256 - Lx9 LINE L1 -251 7393 7300 9 1534 807 221 6 0 chr1 124474171 124474343 -72721089 + Lx9 LINE L1 7145 7317 -327 9 1534 1182 63 40 0 chr1 124474390 124474606 -72720826 + L1Md_F3 LINE L1 6381 6584 0 9 1534 2782 177 44 45 chr1 124474760 124474978 -72720454 - RMER17A2 LTR ERVK 0 906 475 9 1534 809 60 9 0 chr1 124474978 124475094 -72720338 + (GA)n Simple_repeat Simple_repeat 2 118 0 9 1534 2782 134 50 21 chr1 124475094 124475559 -72719873 - RMER17A2 LTR ERVK -425 481 3 9 1534 510 17 0 0 chr1 124475573 124475632 -72719800 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 1534 2739 37 0 0 chr1 124475738 124476066 -72719366 - L1Md_T LINE L1 -2 6580 6253 9 1534 956 325 26 7 chr1 124476374 124476647 -72718785 - B4A SINE B4 -14 278 1 9 1534 1433 231 95 57 chr1 124476735 124477197 -72718235 + RMER13A LTR ERVK 35 670 -236 9 1534 288 371 93 0 chr1 124477210 124477350 -72718082 + RMER13A LTR ERVK 599 751 -109 9 1534 343 244 68 38 chr1 124477433 124477565 -72717867 - B3 SINE B2 -79 137 2 9 1534 5125 57 6 1 chr1 124477657 124478307 -72717125 + L1Md_F2 LINE L1 5918 6570 -12 9 1534 318 291 58 45 chr1 124478711 124478866 -72716566 - B3 SINE B2 0 216 60 9 1534 3264 154 34 27 chr1 124479258 124479850 -72715582 - Lx4B LINE L1 -2 7056 6461 9 1534 493 266 9 0 chr1 124479948 124480061 -72715371 + B3A SINE B2 2 115 -83 9 1534 387 0 0 0 chr1 124480102 124480145 -72715287 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1534 330 170 0 0 chr1 124480145 124480239 -72715193 + GA-rich Low_complexity Low_complexity 1 94 0 9 1534 362 21 0 21 chr1 124480243 124480291 -72715141 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 9 1534 1355 101 11 0 chr1 124482671 124482860 -72712572 + B2_Mm1t SINE B2 1 191 -2 9 1534 239 114 23 0 chr1 124483187 124483231 -72712201 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1534 677 257 95 91 chr1 124483288 124483562 -72711870 - B4A SINE B4 -17 275 1 9 1534 565 315 93 52 chr1 124483982 124484250 -72711182 - B4A SINE B4 -6 286 8 9 1534 356 111 14 0 chr1 124484315 124484387 -72711045 + (TA)n Simple_repeat Simple_repeat 1 73 0 9 1534 469 288 10 68 chr1 124484394 124484599 -72710833 + B3A SINE B2 4 196 -2 9 1534 268 296 0 12 chr1 124484613 124484695 -72710737 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 9 1534 8871 66 3 3 chr1 124484705 124486630 -72708802 - L1Md_F2 LINE L1 -1 6581 4659 9 1534 270 259 24 36 chr1 124486866 124486950 -72708482 - ID4_ SINE ID 0 83 1 9 1534 29 28 0 0 chr1 124487094 124487130 -72708302 + AT_rich Low_complexity Low_complexity 1 36 0 9 1534 641 307 50 41 chr1 124487290 124487511 -72707921 + ID_B1 SINE B4 1 223 -1 9 1534 218 410 42 0 chr1 124488704 124488799 -72706633 - PB1D7 SINE Alu -21 99 1 9 1534 274 375 11 0 chr1 124488715 124488803 -72706629 - ID_B1 SINE B4 -58 166 78 9 1534 513 0 0 0 chr1 124489393 124489450 -72705982 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1534 778 287 6 12 chr1 124489451 124489620 -72705812 - B3A SINE B2 -30 168 1 9 1534 203 88 29 0 chr1 124489624 124489658 -72705774 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1534 3449 143 14 3 chr1 124489708 124490278 -72705154 - Lx2 LINE L1 0 6997 6422 9 1534 7451 70 3 0 chr1 124490414 124491526 -72703906 - L1Md_F2 LINE L1 -9 6573 5456 9 1534 336 83 0 0 chr1 124491567 124491615 -72703817 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1534 966 281 9 9 chr1 124491687 124491906 -72703526 - B4 SINE B4 -16 276 58 9 1534 250 347 65 120 chr1 124491908 124492124 -72703308 + B4A SINE B4 89 292 0 9 1534 22 0 0 0 chr1 124492243 124492265 -72703167 + AT_rich Low_complexity Low_complexity 1 22 0 9 1534 3083 93 5 13 chr1 124492327 124492774 -72702658 + L1Md_F2 LINE L1 6140 6582 0 9 1534 439 284 31 16 chr1 124493051 124493180 -72702252 - MTE2a LTR MaLR -11 368 238 9 1534 521 229 40 24 chr1 124493173 124493298 -72702134 + MTE2a LTR MaLR 238 364 -15 9 1534 653 341 29 0 chr1 124493882 124494087 -72701345 - B4A SINE B4 -70 222 12 9 1534 334 321 38 97 chr1 124495172 124495358 -72700074 - B4A SINE B4 -4 288 114 9 1534 21 36 0 0 chr1 124495749 124495777 -72699655 + AT_rich Low_complexity Low_complexity 1 28 0 9 1534 243 0 0 0 chr1 124496152 124496179 -72699253 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1534 687 258 16 68 chr1 124496179 124496370 -72699062 - B3A SINE B2 -16 182 2 9 1534 455 310 34 27 chr1 124496541 124496687 -72698745 + B4A SINE B4 81 227 -65 9 1534 261 315 59 17 chr1 124496984 124497220 -72698212 - L1ME3B LINE L1 -266 5974 5729 9 1534 4299 73 16 2 chr1 124497705 124498284 -72697148 - L1_Mus3 LINE L1 -12 6626 6040 9 1534 685 254 255 63 chr1 124498354 124498699 -72696733 + MTD LTR MaLR 1 379 0 1 1534 927 137 1 4 chr1 124498983 124499134 -72696298 - B1_Mus2 SINE Alu 0 149 2 1 1534 396 0 0 0 chr1 124499145 124499189 -72696243 + (TTC)n Simple_repeat Simple_repeat 2 45 0 1 1534 333 0 0 0 chr1 124499189 124499226 -72696206 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 1534 252 58 0 0 chr1 124499226 124499278 -72696154 - L1Md_F2 LINE L1 -66 6516 6465 1 1534 240 86 0 0 chr1 124499414 124499449 -72695983 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1534 405 0 0 0 chr1 124499617 124499662 -72695770 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1534 216 333 12 12 chr1 124499882 124499964 -72695468 + B4 SINE B4 1 82 -210 1 1534 273 29 0 0 chr1 124500005 124500039 -72695393 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1534 26 93 0 0 chr1 124500186 124500261 -72695171 + AT_rich Low_complexity Low_complexity 1 75 0 2 1534 428 246 91 0 chr1 124500863 124500973 -72694459 + MTD LTR MaLR 5 124 -297 3 1534 282 63 30 60 chr1 124500982 124501049 -72694383 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 4 1534 376 266 81 59 chr1 124501084 124501220 -72694212 - B1_Mus2 SINE Alu -6 141 3 5 1534 1186 273 22 35 chr1 124501223 124501334 -72694098 + MTD LTR MaLR 113 219 -200 3 1534 891 264 174 9 chr1 124501334 124501655 -72693777 + ORR1D1 LTR MaLR 1 374 0 6 1534 1186 273 22 35 chr1 124501655 124501854 -72693578 + MTD LTR MaLR 220 418 -1 3 1534 797 207 103 73 chr1 124501857 124502118 -72693314 - RLTR25B LTR ERVK -3 1025 757 7 1534 672 275 54 46 chr1 124502256 124502271 -72693161 + RLTR20A LTR ERVK 337 352 -226 8 1534 8275 15 0 0 chr1 124502271 124503203 -72692229 + L1Md_A LINE L1 5651 6582 0 9 1534 937 206 16 51 chr1 124503203 124503430 -72692002 + RLTR20A LTR ERVK 336 577 -1 8 1534 3969 184 50 32 chr1 124503880 124504732 -72690700 - RLTR25B LTR ERVK -160 868 1 1 1534 303 146 0 0 chr1 124504747 124504802 -72690630 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1534 1136 184 0 82 chr1 124504877 124505108 -72690324 + ORR1A3 LTR MaLR 1 212 -114 1 1534 468 193 0 0 chr1 124505108 124505191 -72690241 + ORR1A3-int LTR MaLR 83 165 -1798 1 1534 898 169 0 108 chr1 124505182 124505368 -72690064 - ORR1A4 LTR MaLR -163 166 1 1 1534 522 325 59 7 chr1 124505372 124505524 -72689908 - B4A SINE B4 -62 230 71 1 1534 1874 109 0 50 chr1 124505633 124505931 -72689501 + L1Md_F2 LINE L1 6287 6569 -13 1 1534 353 392 19 25 chr1 124506415 124506577 -72688855 - B4A SINE B4 0 292 132 1 1534 314 323 48 19 chr1 124506668 124506939 -72688493 - L1MEg LINE L1 -824 5322 5044 1 1534 449 127 13 0 chr1 124506944 124507023 -72688409 + (TTC)n Simple_repeat Simple_repeat 1 80 0 1 1534 492 99 0 0 chr1 124507023 124507094 -72688338 + (TTA)n Simple_repeat Simple_repeat 2 72 0 1 1534 339 343 28 23 chr1 124507219 124507395 -72688037 - B3A SINE B2 -19 179 3 2 1534 309 356 158 42 chr1 124507569 124507868 -72687564 - L1MEg LINE L1 -5632 610 260 1 1534 3293 43 13 0 chr1 124507868 124508259 -72687173 + MTA_Mm LTR MaLR 1 396 0 2 1534 309 356 158 42 chr1 124508259 124508364 -72687068 - L1MEg LINE L1 -5983 259 159 1 1534 1158 289 13 34 chr1 124508606 124508993 -72686439 + MTEb LTR MaLR 1 379 0 2 1534 232 211 88 0 chr1 124509709 124509766 -72685666 + MT2C_Mm LTR ERVL 350 411 -64 2 1534 696 309 45 42 chr1 124511122 124511254 -72684178 + B4A SINE B4 1 127 -165 2 1534 360 111 0 0 chr1 124511254 124511308 -72684124 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1534 696 309 45 42 chr1 124511308 124511462 -72683970 + B4A SINE B4 128 288 -4 2 1534 229 250 66 16 chr1 124511724 124511785 -72683647 - MTEb LTR MaLR -17 362 299 2 1534 301 198 25 0 chr1 124511976 124512057 -72683375 + GA-rich Low_complexity Low_complexity 1 83 0 2 1534 1204 59 12 6 chr1 124512071 124512241 -72683191 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 2 1534 762 221 0 0 chr1 124512506 124512655 -72682777 + B1_Mur3 SINE Alu 1 149 0 2 1534 1337 178 38 13 chr1 124513489 124513714 -72681718 - MTC LTR MaLR -4 417 185 3 1534 1025 113 0 0 chr1 124513714 124513855 -72681577 + B1_Mm SINE Alu 2 142 -5 3 1534 1337 178 38 13 chr1 124513855 124513868 -72681564 - MTC LTR MaLR -237 184 173 3 1534 234 0 0 0 chr1 124513877 124513903 -72681529 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1534 830 223 51 0 chr1 124513938 124514113 -72681319 - MTC LTR MaLR -232 189 6 3 1534 676 58 97 49 chr1 124514118 124514262 -72681170 + RMER17B LTR ERVK 311 461 -497 3 1534 221 57 29 0 chr1 124514263 124514298 -72681134 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1534 904 275 24 108 chr1 124514808 124515265 -72680167 + MTC LTR MaLR 14 407 -14 3 1534 1019 259 48 90 chr1 124515914 124516249 -72679183 + MTD LTR MaLR 85 405 -14 3 1534 476 303 6 35 chr1 124516563 124516734 -72678698 - LTR33 LTR ERVL 0 515 350 3 1534 201 39 0 0 chr1 124516753 124516779 -72678653 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 1535 180 231 0 0 chr1 124519097 124519149 -72676283 + GA-rich Low_complexity Low_complexity 3 54 0 3 1535 878 245 131 27 chr1 124519569 124519904 -72675528 + ORR1D2 LTR MaLR 1 370 0 4 1535 3668 262 49 52 chr1 124519904 124521279 -72674153 + ORR1D2-int LTR MaLR 1 1370 0 4 1535 1044 272 140 3 chr1 124521283 124521597 -72673835 + ORR1D2 LTR MaLR 14 370 0 4 1535 599 227 60 7 chr1 124522285 124522436 -72672996 - Lx6 LINE L1 -115 7345 7187 4 1535 1372 254 47 35 chr1 124522440 124522783 -72672649 - RMER20B LTR ERVK -209 418 72 4 1535 544 203 71 14 chr1 124522819 124522959 -72672473 - L1_Mur1 LINE L1 -2784 3102 2955 4 1535 254 0 0 159 chr1 124522959 124523085 -72672347 + (CAGAG)n Simple_repeat Simple_repeat 5 110 0 4 1535 680 123 0 28 chr1 124523088 124523197 -72672235 + B1_Mus2 SINE Alu 42 147 0 4 1535 1071 188 102 3 chr1 124523218 124523276 -72672156 - L1_Mur3 LINE L1 -2921 2959 2902 4 1535 888 114 0 0 chr1 124523276 124523416 -72672016 + (CTATT)n Simple_repeat Simple_repeat 3 142 0 4 1535 1071 188 102 3 chr1 124523416 124523682 -72671750 - L1_Mur3 LINE L1 -2979 2901 2604 4 1535 2116 271 94 10 chr1 124523673 124525024 -72670408 - L1_Mur3 LINE L1 -4248 1632 176 4 1535 501 389 11 0 chr1 124525099 124525284 -72670148 - ID_B1 SINE B4 -36 188 2 4 1535 21 0 0 0 chr1 124525378 124525399 -72670033 + AT_rich Low_complexity Low_complexity 1 21 0 4 1535 358 309 31 0 chr1 124525459 124525556 -72669876 - B3A SINE B2 -92 106 7 5 1535 653 372 9 9 chr1 124526616 124526836 -72668596 + B4A SINE B4 10 229 -63 5 1535 1145 65 0 0 chr1 124526837 124526976 -72668456 + B1_Mus1 SINE Alu 2 140 -8 5 1535 681 53 0 0 chr1 124527104 124527198 -72668234 + (GA)n Simple_repeat Simple_repeat 1 94 0 5 1535 326 192 28 37 chr1 124527203 124527311 -72668121 + (CAGAGA)n Simple_repeat Simple_repeat 6 112 0 5 1535 532 320 72 0 chr1 124528046 124528227 -72667205 + B3A SINE B2 5 198 0 5 1535 812 240 33 33 chr1 124528895 124529106 -72666326 - B3 SINE B2 -4 212 2 5 1535 671 324 14 23 chr1 124529304 124529519 -72665913 - B3 SINE B2 0 216 4 5 1535 565 333 48 24 chr1 124530118 124530370 -72665062 + MTC LTR MaLR 3 260 -161 5 1535 391 346 13 13 chr1 124530893 124531048 -72664384 + RSINE1 SINE B4 3 157 -8 5 1535 640 281 84 70 chr1 124531802 124532089 -72663343 - B4A SINE B4 0 292 2 6 1535 21 57 0 0 chr1 124532292 124532327 -72663105 + AT_rich Low_complexity Low_complexity 1 35 0 6 1535 762 276 28 23 chr1 124532387 124532414 -72663018 - B3 SINE B2 0 216 190 6 1535 4468 10 0 0 chr1 124532414 124532907 -72662525 - MT2_Mm LTR ERVL 0 493 1 6 1535 782 276 28 23 chr1 124532907 124533094 -72662338 - B3A SINE B2 -27 189 1 6 1535 1009 311 36 15 chr1 124533318 124533648 -72661784 - ORR1E LTR MaLR -19 340 4 6 1535 450 241 89 15 chr1 124533926 124534061 -72661371 - B1_Mur4 SINE Alu -2 148 4 6 1535 486 339 0 6 chr1 124534105 124534286 -72661146 - B3A SINE B2 -15 183 4 6 1535 213 132 0 0 chr1 124534337 124534375 -72661057 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1535 496 270 19 62 chr1 124534377 124534539 -72660893 - RSINE1 SINE B4 0 165 11 6 1535 239 140 0 0 chr1 124534640 124534690 -72660742 + L1_Mur2 LINE L1 3671 3720 -2157 6 1535 7149 80 7 2 chr1 124534692 124536330 -72659102 + L1_Mus2 LINE L1 4924 6566 0 7 1535 1008 122 21 21 chr1 124536325 124536517 -72658915 + L1_Mur2 LINE L1 3694 3885 -1992 6 1535 4231 110 20 0 chr1 124536531 124537168 -72658264 + L1_Mus4 LINE L1 5591 6240 -396 7 1535 1149 151 5 0 chr1 124537168 124537353 -72658079 - RMER6B LTR ERVK -274 187 2 7 1535 434 296 35 9 chr1 124537411 124537527 -72657905 - RSINE1 SINE B4 -34 131 13 7 1535 418 152 22 0 chr1 124538028 124538120 -72657312 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 1535 325 333 0 11 chr1 124538124 124538218 -72657214 - B4A SINE B4 -6 286 194 7 1535 297 248 29 19 chr1 124539105 124539208 -72656224 + (CATA)n Simple_repeat Simple_repeat 3 106 0 7 1535 30 27 0 0 chr1 124539218 124539255 -72656177 + AT_rich Low_complexity Low_complexity 1 37 0 7 1535 334 345 81 46 chr1 124539738 124539911 -72655521 - B3 SINE B2 -36 180 2 7 1535 306 287 102 51 chr1 124539922 124540098 -72655334 - B3 SINE B2 -9 186 2 7 1535 585 332 29 42 chr1 124541292 124541531 -72653901 + B4A SINE B4 57 292 0 8 1535 34557 35 1 8 chr1 124541617 124546807 -72648625 + L1Md_T LINE L1 441 5586 -297 8 1535 8177 46 1 0 chr1 124546807 124547801 -72647631 + L1Md_T LINE L1 5587 6581 -1 8 1535 1728 234 114 9 chr1 124547809 124547996 -72647436 + RLTR11A2 LTR ERVK 31 226 -301 8 1535 1281 60 0 0 chr1 124547996 124548247 -72647185 + (GGAGA)n Simple_repeat Simple_repeat 1 251 0 8 1535 1728 234 114 9 chr1 124548247 124548506 -72646926 + RLTR11A2 LTR ERVK 227 524 -3 8 1535 35682 45 4 3 chr1 124548599 124554786 -72640646 - L1Md_T LINE L1 0 6585 298 8 1535 210 71 0 0 chr1 124555276 124555304 -72640128 + (CGTG)n Simple_repeat Simple_repeat 4 31 0 8 1535 213 39 0 0 chr1 124555304 124555329 -72640103 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1535 26 0 0 0 chr1 124555346 124555372 -72640060 + AT_rich Low_complexity Low_complexity 1 26 0 8 1535 526 220 118 122 chr1 124555595 124555874 -72639558 - RLTR12B LTR ERVK -9 519 242 8 1535 762 269 11 101 chr1 124555913 124556049 -72639383 - RLTR12B LTR ERVK -230 298 184 8 1535 441 167 70 159 chr1 124556049 124556206 -72639226 - B1_Mus1 SINE Alu -5 143 1 9 1535 762 269 11 101 chr1 124556206 124556346 -72639086 - RLTR12B LTR ERVK -345 183 47 8 1535 282 189 0 0 chr1 124557587 124557640 -72637792 - MTE2b LTR MaLR -9 370 318 9 1535 867 311 112 24 chr1 124557653 124558029 -72637403 + MTC LTR MaLR 13 421 0 9 1535 858 281 119 55 chr1 124558029 124558153 -72637279 - MTE2b LTR MaLR -59 320 211 9 1535 207 0 0 0 chr1 124558153 124558176 -72637256 + (GA)n Simple_repeat Simple_repeat 1 23 0 9 1535 858 281 119 55 chr1 124558176 124558351 -72637081 - MTE2b LTR MaLR -169 210 1 9 1535 29 47 0 0 chr1 124558573 124558616 -72636816 + AT_rich Low_complexity Low_complexity 1 43 0 9 1535 31 44 0 0 chr1 124559076 124559121 -72636311 + AT_rich Low_complexity Low_complexity 1 45 0 9 1535 1402 247 27 58 chr1 124559610 124559975 -72635457 + ORR1E LTR MaLR 1 354 -5 9 1535 450 65 0 0 chr1 124560475 124560537 -72634895 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1535 339 247 9 61 chr1 124560542 124560688 -72634744 + MTE2b LTR MaLR 240 377 -2 9 1535 260 255 10 0 chr1 124560957 124561059 -72634373 + (TG)n Simple_repeat Simple_repeat 2 104 0 9 1535 222 118 0 0 chr1 124562662 124562696 -72632736 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1535 207 0 0 0 chr1 124562696 124562718 -72632714 + (CG)n Simple_repeat Simple_repeat 1 23 0 1 1535 466 354 32 37 chr1 124562722 124562939 -72632493 - B4 SINE B4 -11 281 66 1 1535 1030 280 171 6 chr1 124562974 124563330 -72632102 + MTD LTR MaLR 3 417 -2 1 1535 586 243 72 129 chr1 124565069 124565263 -72630169 + B3A SINE B2 4 186 -9 1 1535 441 341 84 22 chr1 124565332 124565605 -72629827 - B4A SINE B4 -2 290 1 1 1535 651 273 6 57 chr1 124566595 124566754 -72628678 + B3A SINE B2 1 151 -47 1 1535 444 77 0 0 chr1 124566761 124566826 -72628606 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1535 1117 169 95 11 chr1 124567144 124567408 -72628024 - Lx9 LINE L1 -3 7641 7356 1 1535 1592 221 78 98 chr1 124567408 124567949 -72627483 + RLTR20B3 LTR ERVK 1 530 -47 1 1535 1367 212 82 57 chr1 124567972 124568338 -72627094 - Lx9 LINE L1 -285 7359 6985 1 1535 39176 33 2 1 chr1 124568339 124574538 -72620894 - L1Md_T LINE L1 0 6582 422 1 1535 433 231 0 18 chr1 124574539 124574649 -72620783 - Lx9 LINE L1 -642 7002 6895 1 1535 189 48 45 45 chr1 124574651 124574695 -72620737 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1535 797 249 112 41 chr1 124574695 124574963 -72620469 - RLTR25B LTR ERVK 0 1028 742 1 1535 678 259 76 50 chr1 124575272 124575320 -72620112 - RLTR25B LTR ERVK -175 853 803 1 1535 324 64 0 0 chr1 124575320 124575367 -72620065 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1535 1797 192 143 44 chr1 124575367 124575959 -72619473 - RLTR25B LTR ERVK -226 802 40 1 1535 415 156 5 15 chr1 124575965 124576047 -72619385 - L1_Rod LINE L1 -3389 2757 2675 1 1535 1474 215 25 3 chr1 124576051 124576498 -72618934 - L1_Rod LINE L1 -4284 1563 1108 1 1535 318 258 31 41 chr1 124576545 124576642 -72618790 - PB1 SINE Alu -21 106 11 1 1535 319 352 164 0 chr1 124576806 124576934 -72618498 - RSINE1 SINE B4 -13 152 4 1 1535 685 297 85 4 chr1 124577724 124577984 -72617448 + B4 SINE B4 2 282 -10 1 1535 3336 183 81 3 chr1 124578068 124578710 -72616722 - RLTR17 LTR ERVK 0 692 1 1 1535 234 128 0 0 chr1 124579095 124579134 -72616298 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1535 324 0 0 0 chr1 124579677 124579713 -72615719 + (GAA)n Simple_repeat Simple_repeat 1 36 0 1 1535 225 0 0 0 chr1 124580044 124580069 -72615363 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1535 400 214 185 33 chr1 124580657 124580841 -72614591 + L1MA8 LINE L1 5943 6154 -137 1 1535 243 0 0 0 chr1 124580843 124580870 -72614562 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1535 572 351 22 53 chr1 124581468 124581547 -72613885 + B4A SINE B4 10 85 -207 1 1535 234 397 0 93 chr1 124581547 124581697 -72613735 + B1_Mus2 SINE Alu 2 137 -10 1 1535 355 319 57 43 chr1 124581923 124582064 -72613368 + ORR1E LTR MaLR 1 143 -216 1 1535 853 238 170 25 chr1 124582463 124582786 -72612646 + ORR1D2 LTR MaLR 1 370 0 1 1535 249 163 0 0 chr1 124583009 124583058 -72612374 + CT-rich Low_complexity Low_complexity 2 50 0 1 1535 471 87 0 0 chr1 124583058 124583127 -72612305 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1535 585 319 12 0 chr1 124583142 124583305 -72612127 - B3A SINE B2 -32 166 2 1 1535 1096 97 0 0 chr1 124584452 124584596 -72610836 - B1_Mm SINE Alu -2 145 2 1 1535 1008 326 13 16 chr1 124584767 124585082 -72610350 + MTEb LTR MaLR 4 317 -62 1 1535 262 91 18 0 chr1 124585083 124585138 -72610294 - Lx LINE L1 -1 6653 6598 1 1535 2648 111 33 42 chr1 124585138 124585681 -72609751 - RMER17A LTR ERVK 0 751 248 1 1535 2988 88 10 118 chr1 124585678 124586273 -72609159 - RMER17A LTR ERVK -220 531 1 1 1535 3279 65 62 5 chr1 124586275 124586723 -72608709 - RMER17A-int LTR ERVK -2 1726 1253 1 1535 5196 153 62 4 chr1 124586725 124587642 -72607790 - Lx LINE L1 -51 6603 5634 1 1535 1292 122 0 123 chr1 124587640 124587782 -72607650 + L1_Mm LINE L1 5403 5517 -366 1 1535 3433 92 102 17 chr1 124587782 124588302 -72607130 - LTRIS2 LTR ERV1 0 564 1 1 1535 1292 122 0 123 chr1 124588302 124588411 -72607021 + L1_Mm LINE L1 5518 5623 -260 1 1535 1077 321 110 40 chr1 124588445 124589072 -72606360 - Lx8 LINE L1 -13 7460 6790 1 1535 1666 191 12 103 chr1 124589077 124589483 -72605949 - ORR1B1 LTR MaLR -7 387 19 1 1535 404 267 291 8 chr1 124589486 124589720 -72605712 - Lx8 LINE L1 -696 6777 6478 1 1535 1171 277 86 26 chr1 124589806 124590188 -72605244 - MTD LTR MaLR -14 405 1 1 1535 297 0 0 0 chr1 124591002 124591035 -72604397 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1535 516 296 35 14 chr1 124591292 124591436 -72603996 + RSINE1 SINE B4 4 150 -15 1 1535 27 29 0 0 chr1 124591460 124591494 -72603938 + AT_rich Low_complexity Low_complexity 1 34 0 1 1535 917 156 0 26 chr1 124591713 124591864 -72603568 - B1_Mus2 SINE Alu 0 147 1 1 1535 21 0 0 0 chr1 124591969 124591990 -72603442 + AT_rich Low_complexity Low_complexity 1 21 0 1 1535 3845 16 0 0 chr1 124592486 124592928 -72602504 + L1Md_A LINE L1 5145 5586 -297 1 1535 8707 18 0 0 chr1 124592928 124593924 -72601508 + L1Md_A LINE L1 5587 6582 0 1 1535 223 221 10 59 chr1 124593968 124594113 -72601319 + A-rich Low_complexity Low_complexity 1 137 0 1 1535 624 267 58 62 chr1 124594116 124594324 -72601108 + ID_B1 SINE B4 1 207 -17 1 1535 396 0 0 0 chr1 124594394 124594438 -72600994 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 1 1535 1104 101 0 17 chr1 124594438 124594619 -72600813 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1535 1114 55 14 7 chr1 124594623 124594769 -72600663 - B1_Mm SINE Alu 0 147 1 1 1535 370 204 9 9 chr1 124595201 124595315 -72600117 + (ATG)n Simple_repeat Simple_repeat 1 114 0 1 1535 357 307 61 28 chr1 124595362 124595543 -72599889 - HAL1-2a_MD LINE L1 -505 2519 2333 1 1535 188 303 65 13 chr1 124596088 124596165 -72599267 + MIRb SINE MIR 150 230 -38 1 1535 228 263 17 34 chr1 124596497 124596556 -72598876 - MTE2a LTR MaLR -54 325 268 1 1535 450 0 0 0 chr1 124596568 124596618 -72598814 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1535 934 157 11 0 chr1 124596641 124596819 -72598613 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1535 1012 156 11 6 chr1 124597123 124597297 -72598135 - B2_Mm2 SINE B2 -19 176 2 1 1535 6971 122 7 7 chr1 124597297 124598519 -72596913 + L1_Mus4 LINE L1 5409 6629 -7 1 1535 557 352 55 14 chr1 124598863 124599082 -72596350 + B4 SINE B4 1 228 -64 1 1535 261 180 0 0 chr1 124599099 124599149 -72596283 + GA-rich Low_complexity Low_complexity 2 51 0 1 1535 211 224 0 20 chr1 124599217 124599267 -72596165 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1535 609 292 35 0 chr1 124600172 124600343 -72595089 - B3A SINE B2 -19 179 3 1 1535 229 365 47 0 chr1 124600436 124600543 -72594889 + Lx8 LINE L1 7070 7181 -292 1 1535 32 53 0 38 chr1 124600868 124600947 -72594485 + AT_rich Low_complexity Low_complexity 1 76 0 1 1535 694 210 29 16 chr1 124601260 124601445 -72593987 - B3 SINE B2 0 195 4 1 1535 1061 169 5 0 chr1 124602361 124602545 -72592887 - B2_Mm2 SINE B2 -9 186 2 1 1535 391 356 27 33 chr1 124602568 124602751 -72592681 - B3 SINE B2 -3 213 32 1 1535 495 0 0 0 chr1 124602752 124602807 -72592625 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1535 892 62 0 15 chr1 124602857 124602987 -72592445 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 1 1535 551 293 65 30 chr1 124603018 124603187 -72592245 - B3 SINE B2 -41 175 1 1 1535 216 233 16 32 chr1 124603285 124603347 -72592085 + CT-rich Low_complexity Low_complexity 4 64 0 1 1535 239 215 15 30 chr1 124603353 124603420 -72592012 - B3 SINE B2 0 216 151 1 1535 286 367 0 11 chr1 124603891 124603982 -72591450 + B3A SINE B2 1 90 -108 1 1535 32 26 0 0 chr1 124604138 124604177 -72591255 + AT_rich Low_complexity Low_complexity 1 39 0 1 1535 483 315 175 0 chr1 124604217 124604417 -72591015 - Lx8 LINE L1 -308 7165 6931 1 1535 367 287 28 43 chr1 124604510 124604765 -72590667 - L1M2 LINE L1 -2670 3473 3223 1 1535 319 286 100 43 chr1 124604976 124605309 -72590123 - L1M2 LINE L1 -2995 3145 2786 1 1535 691 274 99 30 chr1 124605478 124605741 -72589691 + RMER20B LTR ERVK 133 413 -214 1 1535 349 354 26 12 chr1 124605763 124606146 -72589286 - L1M2 LINE L1 -3449 2694 2300 1 1535 615 288 92 0 chr1 124606249 124606402 -72589030 + B3A SINE B2 1 167 -31 1 1535 540 306 37 9 chr1 124606605 124606823 -72588609 - ID_B1 SINE B4 0 224 1 1 1535 237 267 37 37 chr1 124606909 124607018 -72588414 - L1MA5 LINE L1 -12 6288 6180 1 1535 3567 170 6 36 chr1 124607020 124607680 -72587752 + Lx3C LINE L1 6330 6969 -7 1 1535 25545 92 11 17 chr1 124607706 124613236 -72582196 + L1Md_F2 LINE L1 108 5586 -297 1 1535 7895 56 2 7 chr1 124613237 124614237 -72581195 + L1Md_F2 LINE L1 5588 6582 0 1 1535 4447 96 37 0 chr1 124614252 124614952 -72580480 + L1_Mm LINE L1 2456 3181 -2702 1 1535 8160 7 0 4 chr1 124614971 124615929 -72579503 - L1Md_T LINE L1 0 6582 5629 1 1535 11174 85 3 1 chr1 124615923 124617558 -72577874 + L1_Mm LINE L1 3168 4806 -1077 1 1535 432 326 67 67 chr1 124617558 124617811 -72577621 + MTD LTR MaLR 28 280 -141 1 1535 364 214 12 12 chr1 124618478 124618563 -72576869 + MTD LTR MaLR 295 379 0 1 1535 540 120 0 0 chr1 124619183 124619283 -72576149 + (TAG)n Simple_repeat Simple_repeat 3 102 0 1 1535 1092 95 0 13 chr1 124619315 124619464 -72575968 - B1_Mus1 SINE Alu 0 148 2 1 1535 492 328 58 16 chr1 124620392 124620581 -72574851 - RMER15 LTR ERVL 0 575 379 1 1535 2224 200 70 26 chr1 124620774 124621319 -72574113 + RLTR31A_Mm LTR ERVK 16 584 0 1 1535 237 246 0 0 chr1 124622293 124622350 -72573082 + (CAA)n Simple_repeat Simple_repeat 1 57 0 1 1535 189 0 0 0 chr1 124622404 124622425 -72573007 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1535 723 101 0 0 chr1 124622427 124622546 -72572886 + (GA)n Simple_repeat Simple_repeat 2 120 0 1 1535 666 319 21 36 chr1 124622548 124622740 -72572692 - ID_B1 SINE B4 -33 191 3 1 1535 338 226 0 0 chr1 124623316 124623378 -72572054 + B3A SINE B2 1 62 -136 1 1535 234 0 0 0 chr1 124623387 124623413 -72572019 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1535 567 103 0 0 chr1 124623413 124623510 -72571922 + (GA)n Simple_repeat Simple_repeat 1 97 0 1 1535 2006 48 4 0 chr1 124623637 124623886 -72571546 + L1_Mus1 LINE L1 6317 6566 -1 1 1535 1285 296 0 13 chr1 124624534 124624839 -72570593 + MTE2b LTR MaLR 6 306 -73 2 1535 1051 60 22 0 chr1 124624843 124624977 -72570455 + B1_Mus2 SINE Alu 3 139 -8 2 1535 294 87 0 0 chr1 124624977 124625023 -72570409 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 1535 2056 129 3 60 chr1 124625831 124626178 -72569254 + ORR1A2 LTR MaLR 1 327 0 2 1535 216 111 0 0 chr1 124626220 124626256 -72569176 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1535 761 304 5 14 chr1 124626944 124627161 -72568271 - ID_B1 SINE B4 -6 218 4 2 1535 29 0 0 0 chr1 124627393 124627422 -72568010 + AT_rich Low_complexity Low_complexity 1 29 0 2 1535 615 282 14 122 chr1 124627535 124627757 -72567675 - B3A SINE B2 0 198 1 2 1535 1196 141 30 5 chr1 124628377 124628576 -72566856 - MT2B LTR ERVL 0 601 398 2 1535 449 373 22 19 chr1 124628586 124628854 -72566578 - Lx8 LINE L1 -165 7308 7040 2 1535 805 323 21 28 chr1 124629400 124629687 -72565745 - B4A SINE B4 -7 285 1 2 1535 518 256 30 8 chr1 124629738 124629872 -72565560 + MTD LTR MaLR 3 139 -280 2 1535 630 232 137 0 chr1 124629913 124630081 -72565351 + MTD LTR MaLR 223 413 -6 2 1535 507 224 273 53 chr1 124630336 124630600 -72564832 - MT2_Mm LTR ERVL -162 331 10 2 1535 527 308 36 36 chr1 124630642 124630807 -72564625 - B4 SINE B4 -115 177 13 2 1535 1508 274 39 15 chr1 124631052 124631441 -72563991 - MTD LTR MaLR -12 407 10 2 1535 722 272 166 39 chr1 124632018 124632310 -72563122 - ORR1D2 LTR MaLR -12 347 24 2 1535 458 245 132 26 chr1 124632293 124632444 -72562988 - LTR52 LTR ERVL -244 177 11 2 1535 2067 196 17 24 chr1 124632972 124633381 -72562051 + MTB_Mm LTR MaLR 2 407 0 2 1535 573 333 17 6 chr1 124633528 124633703 -72561729 + B4 SINE B4 2 178 -114 2 1535 738 119 0 0 chr1 124633734 124633868 -72561564 + (TC)n Simple_repeat Simple_repeat 1 134 0 2 1535 225 0 0 0 chr1 124633868 124633893 -72561539 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1535 2228 199 2 7 chr1 124634143 124634552 -72560880 + MTC LTR MaLR 1 407 -14 2 1535 1124 220 70 30 chr1 124634567 124634906 -72560526 - MTD LTR MaLR -29 378 10 2 1535 644 236 140 43 chr1 124634921 124635156 -72560276 - MTC-int LTR MaLR -977 281 24 2 1535 631 277 39 0 chr1 124635141 124635296 -72560136 + MTC-int LTR MaLR 332 492 -766 2 1535 813 249 68 0 chr1 124635293 124635498 -72559934 + MTEb LTR MaLR 161 379 0 2 1535 886 278 108 42 chr1 124636355 124636734 -72558698 + MTD LTR MaLR 1 404 -15 2 1535 718 330 84 38 chr1 124637487 124637881 -72557551 + MT2A LTR ERVL 16 427 -106 2 1535 1295 242 47 3 chr1 124638181 124638545 -72556887 + RLTR14 LTR ERV1 3 382 0 2 1535 1105 222 43 11 chr1 124638641 124638919 -72556513 + Lx5 LINE L1 6761 7047 -3 2 1535 852 10 0 0 chr1 124639566 124639663 -72555769 + (GGAGAA)n Simple_repeat Simple_repeat 2 98 0 2 1535 378 285 47 31 chr1 124642048 124642175 -72553257 - MTE2b LTR MaLR -191 188 60 2 1535 297 0 0 0 chr1 124642455 124642488 -72552944 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1535 441 0 0 0 chr1 124642502 124642551 -72552881 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1535 494 182 28 49 chr1 124642551 124642695 -72552737 + Lx3C LINE L1 6827 6967 -9 2 1535 468 0 0 0 chr1 124642706 124642758 -72552674 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1535 1041 310 42 31 chr1 124642930 124643283 -72552149 + ORR1E LTR MaLR 1 357 -2 2 1535 3051 104 40 6 chr1 124643646 124643696 -72551736 - L1VL4 LINE L1 -2164 1395 1332 2 1535 1158 113 0 0 chr1 124643696 124643899 -72551533 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 2 1535 3095 142 28 8 chr1 124643899 124644882 -72550550 - L1VL4 LINE L1 -2228 1331 344 2 1535 252 274 113 0 chr1 124645485 124645547 -72549885 - RMER30 DNA MER1_type -1 201 133 2 1535 506 350 85 22 chr1 124645728 124646000 -72549432 + B4 SINE B4 4 292 0 2 1535 2631 125 103 0 chr1 124646019 124646532 -72548900 + MusHAL1 LINE L1 541 1106 -1606 2 1535 263 75 43 29 chr1 124646532 124646601 -72548831 + (TTTTTG)n Simple_repeat Simple_repeat 3 72 0 2 1535 873 109 65 7 chr1 124646602 124646625 -72548807 - B1_Mus1 SINE Alu 0 148 126 2 1535 369 0 0 0 chr1 124646625 124646666 -72548766 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1535 873 109 65 7 chr1 124646666 124646781 -72548651 - B1_Mus1 SINE Alu -23 125 3 2 1535 264 143 54 0 chr1 124646781 124646837 -72548595 + MusHAL1 LINE L1 1091 1149 -1563 2 1535 6159 117 8 1 chr1 124646824 124647769 -72547663 + L1_Mus4 LINE L1 5685 6636 0 2 1535 321 82 0 0 chr1 124647779 124647828 -72547604 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 2 1535 474 280 55 27 chr1 124648112 124648332 -72547100 - RLTR42-int LTR ERVK -4122 1400 1175 2 1535 393 294 94 79 chr1 124648631 124648908 -72546524 + B4 SINE B4 2 282 -10 2 1536 548 349 126 20 chr1 124649774 124650020 -72545412 + B4A SINE B4 1 272 -20 2 1536 239 243 39 189 chr1 124650634 124650761 -72544671 - B1F SINE Alu -34 115 8 2 1536 327 290 38 57 chr1 124651536 124651642 -72543790 + B4 SINE B4 6 109 -183 2 1536 665 291 9 47 chr1 124651701 124651914 -72543518 - B3 SINE B2 -11 205 1 2 1536 226 286 79 0 chr1 124651923 124651986 -72543446 + B4 SINE B4 106 173 -119 2 1536 204 40 0 0 chr1 124652573 124652598 -72542834 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2 1536 369 336 14 7 chr1 124652907 124653045 -72542387 + MLT1B LTR MaLR 4 142 -248 2 1536 33 0 0 0 chr1 124653080 124653113 -72542319 + AT_rich Low_complexity Low_complexity 1 33 0 2 1536 498 236 64 0 chr1 124653177 124653287 -72542145 - B3A SINE B2 -55 143 27 2 1536 1115 221 75 66 chr1 124653366 124653714 -72541718 - Lx6 LINE L1 -9 7451 7101 2 1536 233 182 45 0 chr1 124653718 124653762 -72541670 - B3A SINE B2 -149 49 4 2 1536 24 0 0 0 chr1 124654086 124654110 -72541322 + AT_rich Low_complexity Low_complexity 1 24 0 2 1536 270 241 25 25 chr1 124654356 124654387 -72541045 - PB1D10 SINE Alu 0 117 88 2 1536 387 0 0 0 chr1 124654387 124654430 -72541002 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1536 270 241 25 25 chr1 124654430 124654479 -72540953 - PB1D10 SINE Alu -30 87 37 2 1536 243 114 0 0 chr1 124654772 124654816 -72540616 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1536 208 254 0 33 chr1 124655581 124655642 -72539790 - L4 LINE RTE -974 1055 997 2 1536 780 347 11 0 chr1 124655646 124655836 -72539596 + ID_B1 SINE B4 6 197 -27 2 1536 231 36 0 0 chr1 124656189 124656217 -72539215 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1536 1120 71 7 0 chr1 124656220 124656360 -72539072 - B1_Mus1 SINE Alu -7 141 1 2 1536 22 0 0 0 chr1 124656413 124656435 -72538997 + AT_rich Low_complexity Low_complexity 1 22 0 2 1536 496 302 16 25 chr1 124657249 124657371 -72538061 + B3A SINE B2 46 166 -32 2 1536 450 0 0 0 chr1 124657385 124657435 -72537997 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1536 468 0 0 0 chr1 124657435 124657486 -72537946 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1536 431 315 72 12 chr1 124657905 124658072 -72537360 + MTEa LTR MaLR 7 183 -196 2 1536 330 26 0 0 chr1 124658072 124658111 -72537321 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1536 379 292 24 0 chr1 124658111 124658212 -72537220 + MTEa LTR MaLR 163 267 -112 2 1536 329 277 89 0 chr1 124658393 124658505 -72536927 + B1F SINE Alu 27 148 -1 2 1536 600 242 137 0 chr1 124659191 124659344 -72536088 + B3 SINE B2 7 180 -36 2 1536 414 0 0 0 chr1 124659345 124659391 -72536041 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1536 354 296 37 7 chr1 124660123 124660259 -72535173 + Lx8 LINE L1 6748 6887 -586 2 1536 392 261 86 86 chr1 124660403 124660554 -72534878 - B4A SINE B4 -135 157 7 2 1536 339 329 84 40 chr1 124660564 124660814 -72534618 - L1MCa LINE L1 -4867 1641 1381 2 1536 330 358 110 15 chr1 124661024 124661160 -72534272 + B3A SINE B2 2 150 -48 2 1536 414 0 0 0 chr1 124661183 124661229 -72534203 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1536 7251 75 2 2 chr1 124661352 124662692 -72532740 - L1Md_F2 LINE L1 0 6582 5243 2 1536 21 0 0 0 chr1 124662692 124662713 -72532719 + AT_rich Low_complexity Low_complexity 1 21 0 2 1536 38508 17 2 3 chr1 124662720 124670324 -72525108 - L1Md_A LINE L1 -1 6581 1 2 1536 464 16 0 0 chr1 124670385 124670446 -72524986 - L1Md_T LINE L1 -1 6581 6521 2 1536 25981 89 10 33 chr1 124670446 124672286 -72523146 - L1Md_F LINE L1 -633 5250 3396 2 1536 700 198 0 0 chr1 124672286 124672402 -72523030 + B1_Mur1 SINE Alu 31 146 -3 2 1536 25981 89 10 33 chr1 124672402 124673178 -72522254 - L1Md_F LINE L1 -633 3395 2612 2 1536 312 27 0 0 chr1 124673178 124673215 -72522217 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1536 441 0 0 0 chr1 124673215 124673263 -72522169 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1536 25981 137 17 38 chr1 124673263 124675654 -72519778 - L1Md_F LINE L1 -3272 2611 244 2 1536 1776 226 19 8 chr1 124675761 124676127 -72519305 + ORR1D1 LTR MaLR 1 370 -4 2 1536 313 269 71 44 chr1 124676130 124676243 -72519189 - B3A SINE B2 -75 123 8 2 1536 435 119 0 0 chr1 124676263 124676330 -72519102 + (TTA)n Simple_repeat Simple_repeat 2 68 0 2 1536 335 336 9 27 chr1 124676450 124676560 -72518872 - RSINE1 SINE B4 -14 151 44 2 1536 612 0 0 0 chr1 124676967 124677035 -72518397 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1536 448 330 48 32 chr1 124677063 124677251 -72518181 - ID_B1 SINE B4 -31 193 3 2 1536 603 293 95 18 chr1 124677566 124677955 -72517477 - L1MCa LINE L1 -6057 451 33 2 1536 1043 298 63 53 chr1 124678010 124678366 -72517066 + RMER5 LTR ERV1 33 407 -127 2 1536 3026 53 13 8 chr1 124678366 124678764 -72516668 - MTB LTR MaLR 0 400 1 2 1536 7647 97 7 8 chr1 124678764 124679863 -72515569 - MTB-int LTR MaLR 0 1098 1 2 1536 2957 71 8 2 chr1 124679863 124680257 -72515175 - MTB LTR MaLR 0 396 1 2 1536 1043 298 63 53 chr1 124680257 124680375 -72515057 + RMER5 LTR ERV1 408 516 -18 2 1536 231 88 0 0 chr1 124680375 124680409 -72515023 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1536 1043 298 63 53 chr1 124680409 124680424 -72515008 + RMER5 LTR ERV1 517 526 -8 2 1536 813 324 38 19 chr1 124680814 124681078 -72514354 - B4A SINE B4 0 292 24 2 1536 389 274 41 33 chr1 124681279 124681400 -72514032 + ID_B1 SINE B4 99 220 -4 2 1536 674 294 20 40 chr1 124681417 124681619 -72513813 + B3A SINE B2 1 198 0 3 1536 24 0 0 0 chr1 124682010 124682034 -72513398 + AT_rich Low_complexity Low_complexity 1 24 0 3 1536 207 281 0 35 chr1 124682477 124682562 -72512870 + T-rich Low_complexity Low_complexity 3 84 0 3 1536 844 175 112 15 chr1 124682965 124683162 -72512270 - RMER19C LTR ERVK 0 611 396 3 1536 198 71 0 0 chr1 124683197 124683225 -72512207 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1536 254 29 0 28 chr1 124683229 124683265 -72512167 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1536 307 296 0 57 chr1 124683281 124683403 -72512029 + L1MD LINE L1 3074 3188 -2958 3 1536 348 248 18 71 chr1 124683432 124683545 -72511887 + ID_B1 SINE B4 110 216 -8 3 1536 599 307 43 0 chr1 124683888 124684028 -72511404 + B3A SINE B2 7 152 -46 3 1536 477 0 0 0 chr1 124684031 124684084 -72511348 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1536 449 278 48 151 chr1 124684195 124684547 -72510885 + RLTR12B LTR ERVK 148 463 -65 3 1536 3446 185 44 13 chr1 124684543 124685227 -72510205 - ORR1B1-int LTR MaLR -1258 705 1 3 1536 1752 197 46 39 chr1 124685227 124685617 -72509815 - ORR1B1 LTR MaLR 0 394 2 3 1536 494 291 59 7 chr1 124686221 124686295 -72509137 + ID SINE ID 2 83 -141 3 1536 342 272 44 97 chr1 124686295 124686409 -72509023 + PB1D10 SINE Alu 3 110 -7 3 1536 441 226 95 30 chr1 124686805 124686880 -72508552 + Lx9 LINE L1 5657 5740 -107 3 1536 2144 64 158 16 chr1 124686880 124687183 -72508249 + ORR1A1 LTR MaLR 1 346 0 3 1536 441 232 94 28 chr1 124687183 124687296 -72508136 + Lx9 LINE L1 5741 5893 -1751 3 1536 238 266 48 14 chr1 124688093 124688143 -72507289 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 1536 291 28 0 0 chr1 124688143 124688179 -72507253 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1536 857 148 37 17 chr1 124688179 124688447 -72506985 + (TCTA)n Simple_repeat Simple_repeat 1 273 0 3 1536 478 264 41 20 chr1 124688922 124689054 -72506378 + RSINE1 SINE B4 4 141 -24 3 1536 672 48 0 0 chr1 124689054 124689138 -72506294 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 1536 478 264 41 20 chr1 124689138 124689152 -72506280 + RSINE1 SINE B4 142 153 -12 3 1536 414 260 109 104 chr1 124690097 124690125 -72505307 - B2_Mm2 SINE B2 -1 194 173 3 1536 2030 4 0 0 chr1 124690125 124690352 -72505080 - L1Md_A LINE L1 -2 6580 6354 3 1536 509 249 120 22 chr1 124690352 124690516 -72504916 - B3 SINE B2 -23 172 1 3 1536 650 47 0 11 chr1 124691121 124691208 -72504224 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 3 1536 371 220 139 10 chr1 124693009 124693110 -72502322 - RSINE1 SINE B4 -51 114 1 3 1536 735 102 8 15 chr1 124693111 124693241 -72502191 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 3 1536 234 164 0 0 chr1 124693238 124693293 -72502139 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 3 1536 375 323 107 25 chr1 124694052 124694211 -72501221 + ID_B1 SINE B4 40 211 -13 3 1536 758 133 17 0 chr1 124694244 124694364 -72501068 - RLTR11A LTR ERVK 0 528 407 3 1536 578 333 10 62 chr1 124694470 124694642 -72500790 + B3A SINE B2 4 166 -32 3 1536 375 23 0 0 chr1 124694642 124694686 -72500746 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1536 578 333 10 62 chr1 124694686 124694708 -72500724 + B3A SINE B2 167 187 -11 3 1536 228 35 0 0 chr1 124695009 124695038 -72500394 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1536 878 296 25 7 chr1 124695050 124695332 -72500100 - B4A SINE B4 -4 288 2 3 1536 444 264 49 55 chr1 124696233 124696397 -72499035 + B4A SINE B4 129 291 -1 3 1536 21 0 0 0 chr1 124696728 124696749 -72498683 + AT_rich Low_complexity Low_complexity 1 21 0 3 1536 312 253 0 40 chr1 124697840 124697939 -72497493 - Lx6 LINE L1 -59 7401 7307 3 1536 517 368 0 6 chr1 124697975 124698147 -72497285 - B3A SINE B2 -27 171 1 3 1536 224 200 33 0 chr1 124698375 124698435 -72496997 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 3 1536 600 117 89 311 chr1 124699197 124699394 -72496038 + RLTR28 LTR ERVL 1 122 -402 3 1536 369 0 0 0 chr1 124699394 124699435 -72495997 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 3 1536 600 117 89 311 chr1 124699435 124699485 -72495947 + RLTR28 LTR ERVL 123 193 -331 3 1536 1293 70 0 0 chr1 124699485 124699657 -72495775 - L1_Mm LINE L1 -808 5075 4904 3 1536 2041 55 69 4 chr1 124699660 124699935 -72495497 + L1_Mus1 LINE L1 6273 6565 -2 3 1536 1878 152 24 12 chr1 124699947 124700286 -72495146 + RLTR28 LTR ERVL 182 524 0 3 1536 4414 83 3 0 chr1 124700779 124701358 -72494074 - L1_Mus3 LINE L1 0 6638 6058 3 1536 2891 100 64 0 chr1 124701376 124701991 -72493441 + L1_Mus3 LINE L1 5419 6068 -570 3 1536 2341 160 10 8 chr1 124702905 124703296 -72492136 + ORR1B1 LTR MaLR 3 394 0 3 1536 568 260 88 97 chr1 124703684 124704025 -72491407 + MYSERV6-int LTR ERVK 7162 7499 -1460 3 1536 300 216 98 98 chr1 124704182 124704305 -72491127 + RLTR19-int LTR ERVK 2901 3023 -3114 3 1536 3208 159 54 5 chr1 124705197 124705773 -72489659 - Lx2 LINE L1 0 6997 6394 3 1536 432 0 0 0 chr1 124706225 124706273 -72489159 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1536 369 0 0 0 chr1 124706273 124706313 -72489119 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1536 1991 53 0 0 chr1 124706385 124706630 -72488802 - L1Md_T LINE L1 0 6582 6338 3 1536 1200 279 45 8 chr1 124707258 124707613 -72487819 + RMER1B Other Other 2 369 -697 3 1536 1013 197 84 0 chr1 124707612 124707815 -72487617 + RMER1B Other Other 517 736 -330 3 1536 2720 145 40 36 chr1 124708068 124708326 -72487106 + RLTR28 LTR ERVL 1 262 -262 3 1536 1462 62 0 0 chr1 124708326 124708518 -72486914 - L1_Mus1 LINE L1 0 6567 6376 3 1536 2720 145 40 36 chr1 124708518 124708781 -72486651 + RLTR28 LTR ERVL 263 524 0 3 1536 237 318 16 0 chr1 124709088 124709151 -72486281 + B4A SINE B4 3 66 -226 3 1536 1770 253 104 26 chr1 124709160 124709668 -72485764 - RMER15 LTR ERVL 0 575 28 3 1536 488 338 14 78 chr1 124709772 124709990 -72485442 + B4A SINE B4 89 292 0 3 1536 315 326 130 43 chr1 124710899 124711130 -72484302 - RMER15 LTR ERVL -18 557 307 3 1536 451 172 30 7 chr1 124711323 124711458 -72483974 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 1536 651 330 30 1 chr1 124711888 124712083 -72483349 - B4A SINE B4 0 292 90 3 1536 585 275 42 28 chr1 124712150 124712363 -72483069 - B3 SINE B2 0 216 1 3 1536 323 356 95 53 chr1 124713052 124713221 -72482211 + B3 SINE B2 2 177 -39 3 1536 563 0 15 0 chr1 124713475 124713542 -72481890 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1536 339 105 0 0 chr1 124713604 124713661 -72481771 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1536 363 256 22 0 chr1 124714281 124714371 -72481061 + PB1D10 SINE Alu 26 117 0 3 1536 214 250 0 0 chr1 124714527 124714579 -72480853 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1536 516 286 37 84 chr1 124714579 124714770 -72480662 - B3A SINE B2 -16 182 1 3 1536 2633 181 13 11 chr1 124714782 124715240 -72480192 + Lx4A LINE L1 6596 7054 -4 3 1536 501 17 0 0 chr1 124715241 124715299 -72480133 + (TTA)n Simple_repeat Simple_repeat 2 59 0 3 1536 479 17 17 0 chr1 124716136 124716196 -72479236 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1536 4202 96 24 35 chr1 124716424 124717081 -72478351 + Lx LINE L1 5998 6647 -7 3 1536 707 96 66 0 chr1 124718410 124718576 -72476856 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 3 1536 302 282 234 44 chr1 124718584 124718721 -72476711 - RSINE1 SINE B4 0 165 3 3 1536 451 247 0 0 chr1 124719023 124719112 -72476320 + RSINE1 SINE B4 9 97 -68 3 1536 297 290 0 0 chr1 124719752 124719821 -72475611 - ID4_ SINE ID -3 80 12 3 1536 488 255 63 99 chr1 124719859 124720081 -72475351 - ID_B1 SINE B4 -10 214 1 3 1536 2097 135 110 21 chr1 124720214 124720586 -72474846 - RLTR44A LTR ERVK 0 405 1 3 1536 2543 180 45 18 chr1 124720712 124721204 -72474228 + RLTR28 LTR ERVL 1 505 -19 3 1536 2580 265 107 12 chr1 124721593 124722429 -72473003 - Lx6 LINE L1 -26 7434 6520 3 1536 8125 226 59 28 chr1 124722431 124723745 -72471687 - Lx6 LINE L1 -1186 6274 4868 3 1536 1086 86 0 0 chr1 124723745 124723896 -72471536 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 3 1536 8125 210 77 34 chr1 124723896 124725245 -72470187 - Lx6 LINE L1 -1013 4867 3511 3 1536 266 360 79 0 chr1 124725292 124725456 -72469976 + RMER15 LTR ERVL 383 559 -16 3 1536 310 321 0 150 chr1 124726485 124726672 -72468760 + B4A SINE B4 3 161 -131 3 1536 374 280 29 36 chr1 124727174 124727311 -72468121 + B4A SINE B4 157 292 0 3 1536 185 86 0 54 chr1 124727333 124727370 -72468062 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 3 1536 1958 308 97 32 chr1 124727905 124728402 -72467030 - Lx9 LINE L1 -48 7596 7054 3 1536 1101 83 7 0 chr1 124728402 124728547 -72466885 - B1_Mus2 SINE Alu 0 147 2 3 1536 1958 308 97 32 chr1 124728547 124729250 -72466182 - Lx9 LINE L1 -591 7053 6320 3 1536 2002 251 222 34 chr1 124729439 124730075 -72465357 - Lx9 LINE L1 -1668 5976 5203 3 1536 212 0 36 0 chr1 124730075 124730103 -72465329 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1536 2002 252 74 33 chr1 124730103 124730384 -72465048 - Lx9 LINE L1 -645 5202 4927 3 1536 1156 211 5 5 chr1 124731306 124731530 -72463902 + URR1A DNA MER1_type 1 224 -2 3 1536 414 252 29 0 chr1 124732731 124732834 -72462598 + RMER15 LTR ERVL 405 510 -65 3 1536 307 290 85 46 chr1 124733347 124733477 -72461955 + RSINE1 SINE B4 31 165 0 3 1536 384 22 0 0 chr1 124733494 124733539 -72461893 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1536 22 0 0 0 chr1 124733555 124733577 -72461855 + AT_rich Low_complexity Low_complexity 1 22 0 3 1536 238 336 40 44 chr1 124733855 124734151 -72461281 - L1MC4 LINE L1 -448 7594 7300 3 1536 198 103 0 0 chr1 124734270 124734299 -72461133 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1536 433 377 13 0 chr1 124734316 124734475 -72460957 - RSINE1 SINE B4 -2 163 3 3 1536 364 231 199 52 chr1 124734559 124734829 -72460603 + ORR1D2 LTR MaLR 1 374 0 3 1536 312 41 0 0 chr1 124734908 124734957 -72460475 - L1_Mus1 LINE L1 0 6567 6519 3 1536 22 0 0 0 chr1 124735157 124735179 -72460253 + AT_rich Low_complexity Low_complexity 1 22 0 3 1536 234 182 0 0 chr1 124735314 124735358 -72460074 - ORR1E LTR MaLR -8 371 328 3 1536 6179 69 7 11 chr1 124735359 124736218 -72459214 + L1_Mus1 LINE L1 5710 6565 -2 3 1536 204 125 0 0 chr1 124736400 124736432 -72459000 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1536 602 344 0 18 chr1 124736460 124736623 -72458809 - ORR1E LTR MaLR -172 187 28 3 1536 24 67 0 0 chr1 124737103 124737148 -72458284 + AT_rich Low_complexity Low_complexity 1 45 0 3 1536 567 276 89 20 chr1 124737315 124737563 -72457869 + Lx7 LINE L1 5599 5863 -1610 3 1536 653 282 28 22 chr1 124738403 124738584 -72456848 - B3A SINE B2 -16 182 1 4 1536 663 275 30 76 chr1 124740811 124741008 -72454424 - B3A SINE B2 -6 189 2 4 1536 666 130 0 0 chr1 124741543 124741651 -72453781 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 1536 209 368 102 60 chr1 124742048 124742846 -72452586 - L2 LINE L2 -978 2441 1611 4 1536 291 217 55 24 chr1 124742853 124743018 -72452414 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 4 1536 203 333 58 0 chr1 124743116 124743203 -72452229 - L2 LINE L2 -1867 1552 1461 4 1536 644 36 0 12 chr1 124744227 124744311 -72451121 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1536 426 200 0 115 chr1 124744551 124744664 -72450768 + RLTR14 LTR ERV1 82 181 -201 4 1536 284 341 88 72 chr1 124745920 124746239 -72449193 + MER119 DNA MER1_type 259 582 -1 4 1536 326 367 102 0 chr1 124746553 124746749 -72448683 - Lx8 LINE L1 -187 7286 7071 4 1536 548 312 48 12 chr1 124747171 124747421 -72448011 + L1MA4A LINE L1 5673 5931 -372 4 1536 459 309 73 0 chr1 124747678 124747856 -72447576 + B3A SINE B2 2 192 -6 4 1536 353 276 57 9 chr1 124748611 124748717 -72446715 - B3A SINE B2 -87 111 1 4 1536 390 115 0 0 chr1 124749262 124749323 -72446109 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1536 482 325 31 5 chr1 124749367 124749559 -72445873 - B3A SINE B2 -1 197 1 4 1536 335 214 22 11 chr1 124749823 124749913 -72445519 + L1MCb LINE L1 171 261 -5784 4 1536 497 390 121 19 chr1 124749968 124750504 -72444928 + L1MCb LINE L1 336 926 -5119 4 1536 240 296 83 9 chr1 124750513 124750622 -72444810 - PB1D10 SINE Alu 0 117 1 4 1536 458 267 49 12 chr1 124750622 124750702 -72444730 - ID SINE ID -138 86 1 4 1536 320 345 65 10 chr1 124751049 124751248 -72444184 + L1MCb LINE L1 1434 1643 -5108 4 1536 421 281 107 7 chr1 124751292 124751432 -72444000 + RSINE1 SINE B4 2 155 -10 4 1536 671 283 61 0 chr1 124752137 124752317 -72443115 + B3 SINE B2 1 191 -25 4 1536 535 316 39 6 chr1 124752510 124752666 -72442766 + RSINE1 SINE B4 3 163 -2 4 1536 5733 88 29 8 chr1 124752687 124753819 -72441613 + L1Md_F LINE L1 382 1540 -4343 4 1536 3230 45 2 0 chr1 124753813 124754232 -72441200 + L1Md_F2 LINE L1 5166 5585 -298 4 1536 7716 68 1 8 chr1 124754233 124755235 -72440197 + L1Md_F2 LINE L1 5587 6581 -1 4 1536 497 0 0 0 chr1 124755240 124755303 -72440129 + L1Md_T LINE L1 6520 6582 0 4 1536 212 59 29 0 chr1 124755307 124755341 -72440091 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1536 1203 81 0 0 chr1 124755930 124756103 -72439329 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1536 205 29 0 56 chr1 124756210 124756246 -72439186 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1536 23 54 0 0 chr1 124756367 124756404 -72439028 + AT_rich Low_complexity Low_complexity 1 37 0 4 1536 1086 200 53 11 chr1 124756408 124756671 -72438761 - Lx LINE L1 -3 6651 6378 4 1536 460 204 0 0 chr1 124756665 124756753 -72438679 - MusHAL1 LINE L1 -3256 98 11 4 1536 420 326 80 22 chr1 124758245 124758383 -72437049 - B4A SINE B4 -145 147 2 4 1536 495 92 35 0 chr1 124758551 124758638 -72436794 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1536 212 247 0 85 chr1 124758638 124758744 -72436688 + CT-rich Low_complexity Low_complexity 1 97 0 4 1536 537 188 20 55 chr1 124759333 124759479 -72435953 - Lx3C LINE L1 -9 6967 6827 4 1536 450 0 0 0 chr1 124759479 124759529 -72435903 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1536 306 0 0 0 chr1 124759544 124759578 -72435854 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4 1536 995 114 7 0 chr1 124759580 124759720 -72435712 - B1_Mus2 SINE Alu -6 141 1 4 1536 2959 81 0 47 chr1 124759723 124760149 -72435283 - L1_Mus2 LINE L1 0 6566 6161 4 1536 2283 60 0 0 chr1 124760149 124760451 -72434981 + L1_Mus2 LINE L1 5864 6165 -401 4 1536 3916 224 41 184 chr1 124760473 124761249 -72434183 - L1_Mur1 LINE L1 -106 5777 5008 4 1536 5125 96 37 0 chr1 124761249 124761976 -72433456 - Lx3_Mus LINE L1 0 7009 6256 4 1536 4904 152 48 53 chr1 124761976 124763204 -72432228 - L1_Mur1 LINE L1 -876 5007 4059 4 1536 478 273 43 5 chr1 124763253 124763463 -72431969 - L1M2 LINE L1 -541 5759 5542 4 1536 445 305 44 31 chr1 124763477 124763636 -72431796 - ORR1E LTR MaLR -164 195 35 4 1536 335 256 0 0 chr1 124763857 124763935 -72431497 + Lx8 LINE L1 7038 7115 -358 4 1536 270 0 0 0 chr1 124764100 124764130 -72431302 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1536 577 243 80 13 chr1 124764202 124764352 -72431080 + MTE2b LTR MaLR 168 327 -52 4 1536 1146 89 0 0 chr1 124764504 124764650 -72430782 - B1_Mm SINE Alu 0 147 2 4 1536 224 91 23 0 chr1 124765104 124765148 -72430284 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 4 1536 235 338 0 0 chr1 124765160 124765228 -72430204 + B4A SINE B4 221 288 -4 4 1536 294 29 0 0 chr1 124765323 124765358 -72430074 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1536 565 215 146 0 chr1 124766622 124766752 -72428680 - B1_Mur4 SINE Alu 0 150 2 4 1536 384 321 67 79 chr1 124766794 124767034 -72428398 + B4A SINE B4 1 237 -55 4 1536 786 306 89 42 chr1 124767347 124767719 -72427713 + MTE2a LTR MaLR 20 396 -23 4 1536 245 318 9 36 chr1 124767968 124768079 -72427353 + RMER12 LTR ERVK 748 855 -467 4 1536 586 320 9 52 chr1 124768106 124768317 -72427115 - B4 SINE B4 -77 215 14 4 1536 221 295 97 71 chr1 124768858 124768971 -72426461 - B4 SINE B4 -174 118 3 4 1536 234 0 0 0 chr1 124769176 124769202 -72426230 + (CAT)n Simple_repeat Simple_repeat 2 27 0 4 1536 329 392 84 4 chr1 124769490 124769741 -72425691 - MLT1C LTR MaLR -9 458 188 4 1536 956 149 11 59 chr1 124769902 124770088 -72425344 + RLTR41 LTR ERV1 1 177 -269 4 1536 504 158 0 0 chr1 124770109 124770185 -72425247 + RLTR41 LTR ERV1 146 221 -225 4 1536 5054 18 0 0 chr1 124770185 124770797 -72424635 + L1Md_T LINE L1 4975 5586 -297 4 1536 9017 6 0 0 chr1 124770797 124771793 -72423639 + L1Md_T LINE L1 5587 6582 0 4 1536 204 40 0 0 chr1 124771808 124771833 -72423599 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1536 227 200 0 24 chr1 124772216 124772289 -72423143 + T-rich Low_complexity Low_complexity 1 71 0 4 1536 988 237 77 9 chr1 124772577 124772798 -72422634 + RLTR41 LTR ERV1 211 446 0 4 1536 459 0 0 0 chr1 124773251 124773302 -72422130 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1536 341 242 52 45 chr1 124773747 124773881 -72421551 - RLTR42-int LTR ERVK -4199 1323 1189 4 1536 2608 82 8 19 chr1 124774416 124774790 -72420642 + L1Md_F2 LINE L1 6213 6582 0 4 1536 660 337 48 39 chr1 124775115 124775424 -72420008 + MTE2a LTR MaLR 1 312 -67 4 1536 875 175 122 10 chr1 124775441 124775637 -72419795 - Lx5 LINE L1 -258 6792 6575 4 1536 294 169 46 0 chr1 124775697 124775762 -72419670 + MTE2a LTR MaLR 310 377 -2 4 1536 230 200 18 0 chr1 124775812 124775867 -72419565 + T-rich Low_complexity Low_complexity 2 57 0 4 1536 619 253 56 25 chr1 124776380 124776542 -72418890 - ID_B1 SINE B4 -53 171 5 4 1536 511 331 58 32 chr1 124776591 124776747 -72418685 + RSINE1 SINE B4 6 165 0 4 1536 2653 102 16 0 chr1 124776795 124777178 -72418254 + Lx3_Mus LINE L1 6621 7009 0 4 1536 426 39 0 0 chr1 124777504 124777556 -72417876 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1536 420 274 104 8 chr1 124777573 124777698 -72417734 - B3A SINE B2 -57 141 5 4 1536 429 20 0 0 chr1 124779028 124779078 -72416354 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1536 279 0 0 0 chr1 124779078 124779108 -72416324 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1536 367 185 22 0 chr1 124779442 124779534 -72415898 + CT-rich Low_complexity Low_complexity 1 94 0 4 1536 312 127 0 0 chr1 124779534 124779589 -72415843 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1536 727 330 31 25 chr1 124779713 124779999 -72415433 - RMER15 LTR ERVL -39 536 249 4 1536 826 228 34 29 chr1 124780087 124780295 -72415137 - ORR1B2 LTR MaLR -158 209 1 4 1537 249 238 44 0 chr1 124780669 124780745 -72414687 + PB1D7 SINE Alu 63 149 0 4 1537 597 313 123 7 chr1 124781035 124781344 -72414088 - Lx8 LINE L1 -165 7308 6964 4 1537 917 287 61 70 chr1 124781980 124782339 -72413093 - MTE2a LTR MaLR -15 364 9 4 1537 279 0 0 0 chr1 124782463 124782494 -72412938 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1537 348 359 38 11 chr1 124782527 124782710 -72412722 + Lx8 LINE L1 7200 7387 -86 4 1537 5710 225 124 37 chr1 124782851 124783487 -72411945 - Lx9 LINE L1 -1 7643 6968 4 1537 245 0 86 0 chr1 124783495 124783530 -72411902 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1537 1032 102 0 7 chr1 124783530 124783669 -72411763 - B1_Mus1 SINE Alu -9 139 1 4 1537 5710 225 124 37 chr1 124783669 124783928 -72411504 - Lx9 LINE L1 -677 6967 6726 4 1537 1762 232 49 12 chr1 124783928 124784334 -72411098 + MTC LTR MaLR 1 421 0 4 1537 5710 225 124 37 chr1 124784334 124785151 -72410281 - Lx9 LINE L1 -919 6725 5781 4 1537 200 392 37 0 chr1 124786332 124786439 -72408993 - L2a LINE L2 -25 3401 3291 4 1537 614 342 63 54 chr1 124786454 124786803 -72408629 + ORR1E LTR MaLR 6 357 -2 4 1537 827 287 196 0 chr1 124787349 124787666 -72407766 - MTEa LTR MaLR 0 379 1 4 1537 2330 75 3 6 chr1 124788064 124788375 -72407057 - L1Md_F2 LINE L1 -12 6570 6261 4 1537 646 271 59 73 chr1 124788488 124788602 -72406830 - B3A SINE B2 0 216 103 4 1537 2462 94 56 108 chr1 124788602 124789103 -72406329 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1537 646 289 40 23 chr1 124789103 124789207 -72406225 - B3A SINE B2 -94 104 2 4 1537 405 296 8 0 chr1 124790049 124790174 -72405258 + CT-rich Low_complexity Low_complexity 2 127 0 4 1537 351 0 0 0 chr1 124790764 124790803 -72404629 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1537 495 0 0 0 chr1 124790803 124790857 -72404575 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1537 279 309 25 0 chr1 124790915 124790996 -72404436 - Lx8 LINE L1 -188 7285 7203 4 1537 521 30 0 15 chr1 124791554 124791622 -72403810 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 4 1537 370 298 0 55 chr1 124791668 124791778 -72403654 - RSINE1 SINE B4 -41 124 21 4 1537 270 0 0 0 chr1 124791955 124791985 -72403447 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1537 389 275 12 0 chr1 124791996 124792076 -72403356 - ID_B1 SINE B4 -36 188 108 4 1537 28 29 0 0 chr1 124792305 124792340 -72403092 + AT_rich Low_complexity Low_complexity 1 35 0 5 1537 438 127 0 0 chr1 124792344 124792415 -72403017 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1537 264 301 66 61 chr1 124792415 124792613 -72402819 - B3 SINE B2 -15 201 3 5 1537 3484 292 85 61 chr1 124792788 124795328 -72400104 - Lx7 LINE L1 -4 7469 4783 5 1537 334 299 20 10 chr1 124795328 124795426 -72400006 - B3A SINE B2 -94 104 6 5 1537 3484 292 85 61 chr1 124795426 124795761 -72399671 - Lx7 LINE L1 -4 4782 4427 5 1537 22 0 0 0 chr1 124795761 124795783 -72399649 + AT_rich Low_complexity Low_complexity 1 22 0 5 1537 419 289 45 0 chr1 124795791 124795947 -72399485 - Lx7 LINE L1 -1641 4239 4077 5 1537 504 330 82 10 chr1 124795947 124796143 -72399289 - B3A SINE B2 -2 214 5 5 1537 294 29 0 0 chr1 124796301 124796336 -72399096 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1537 354 107 0 0 chr1 124796359 124796415 -72399017 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1537 554 296 0 39 chr1 124796419 124796549 -72398883 - B3A SINE B2 -38 160 36 5 1537 1132 199 40 81 chr1 124796550 124796846 -72398586 + ORR1C1 LTR MaLR 1 284 -94 5 1537 305 347 16 25 chr1 124797161 124797282 -72398150 + B4A SINE B4 2 121 -171 5 1537 564 248 57 44 chr1 124797848 124798006 -72397426 - L1_Rod LINE L1 -3769 2078 1915 5 1537 5820 44 6 1 chr1 124798006 124798729 -72396703 - L1Md_F3 LINE L1 -3 6581 5856 5 1537 564 252 50 39 chr1 124798729 124798807 -72396625 - L1_Rod LINE L1 -3933 1914 1832 5 1537 26 0 0 0 chr1 124798836 124798862 -72396570 + AT_rich Low_complexity Low_complexity 1 26 0 5 1537 3749 91 2 9 chr1 124799144 124799678 -72395754 - L1Md_F2 LINE L1 -1 6581 6052 5 1537 1149 29 0 0 chr1 124799708 124799845 -72395587 + (TCTCCC)n Simple_repeat Simple_repeat 6 142 0 5 1537 711 332 88 4 chr1 124799910 124800137 -72395295 - B4A SINE B4 -20 272 27 5 1537 494 290 80 40 chr1 124800904 124801055 -72394377 - RSINE1 SINE B4 -2 163 7 5 1537 414 0 0 0 chr1 124802225 124802271 -72393161 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1537 337 319 99 21 chr1 124802275 124802416 -72393016 - B3A SINE B2 -46 152 1 5 1537 3278 73 2 48 chr1 124802778 124803252 -72392180 + L1_Mus2 LINE L1 6113 6564 -2 5 1537 1362 221 98 45 chr1 124803386 124803804 -72391628 + RMER10A LTR ERVL 2 441 -1 5 1537 357 162 22 22 chr1 124803804 124803945 -72391487 + CT-rich Low_complexity Low_complexity 1 141 0 5 1537 1493 304 52 45 chr1 124804185 124804792 -72390640 - L1M2 LINE L1 -942 5201 4583 5 1537 1890 30 4 4 chr1 124804792 124805027 -72390405 - L1Md_A LINE L1 0 6582 6348 5 1537 1493 304 52 45 chr1 124805027 124805301 -72390131 - L1M2 LINE L1 -1561 4582 4314 5 1537 351 0 0 0 chr1 124805433 124805472 -72389960 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1537 390 42 0 0 chr1 124805570 124805618 -72389814 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1537 279 79 0 0 chr1 124805964 124806002 -72389430 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1537 459 0 0 0 chr1 124806002 124806052 -72389380 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1537 599 315 55 24 chr1 124806681 124806960 -72388472 - B4A SINE B4 0 292 1 5 1537 754 298 23 54 chr1 124807269 124807528 -72387904 - ORR1E LTR MaLR -108 251 1 5 1537 405 0 0 0 chr1 124807612 124807657 -72387775 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1537 268 349 9 44 chr1 124808292 124808406 -72387026 - B4A SINE B4 0 292 183 5 1537 238 293 47 47 chr1 124808377 124808463 -72386969 - B1F2 SINE Alu -63 86 1 5 1537 295 289 256 8 chr1 124809917 124810046 -72385386 - RSINE1 SINE B4 0 165 5 5 1537 266 286 0 32 chr1 124810360 124810454 -72384978 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 5 1537 547 261 113 6 chr1 124810493 124810670 -72384762 - B4A SINE B4 -86 206 11 5 1537 523 289 101 20 chr1 124810714 124810912 -72384520 + B3A SINE B2 1 214 -2 5 1537 677 322 53 53 chr1 124811405 124811690 -72383742 + B4 SINE B4 4 288 -4 5 1537 365 285 38 15 chr1 124813535 124813667 -72381765 - Lx8 LINE L1 -225 7248 7114 5 1537 650 242 36 12 chr1 124814384 124814551 -72380881 - MTE2a LTR MaLR -5 374 204 5 1537 10273 177 72 58 chr1 124815319 124819097 -72376335 - Lx LINE L1 -12 6642 2763 5 1537 4264 89 35 5 chr1 124819093 124819735 -72375697 - L1VL2 LINE L1 -2035 1580 918 5 1537 266 0 29 0 chr1 124819735 124819769 -72375663 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1537 4264 158 164 6 chr1 124819769 124820506 -72374926 - L1VL2 LINE L1 -5418 917 65 5 1537 255 238 16 0 chr1 124820962 124821025 -72374407 - RLTR19C LTR ERVK -409 97 34 5 1537 210 37 0 0 chr1 124821102 124821129 -72374303 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1537 323 374 41 0 chr1 124821201 124821324 -72374108 + B3 SINE B2 39 166 -50 5 1537 614 220 185 11 chr1 124821830 124822014 -72373418 - B3 SINE B2 0 216 1 5 1537 334 351 67 7 chr1 124822671 124822806 -72372626 + RSINE1 SINE B4 15 157 -8 5 1537 590 287 150 13 chr1 124823110 124823343 -72372089 - Lx6 LINE L1 -638 6822 6558 5 1537 1410 284 88 11 chr1 124823337 124823851 -72371581 + Lx6 LINE L1 6506 7434 -26 5 1537 205 51 0 49 chr1 124823851 124823892 -72371540 + (TAAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1537 261 341 33 86 chr1 124823982 124824133 -72371299 + B4A SINE B4 128 270 -22 5 1537 205 149 75 0 chr1 124824799 124824866 -72370566 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1537 455 326 56 56 chr1 124825436 124825634 -72369798 - B3A SINE B2 0 198 1 5 1537 239 162 62 12 chr1 124825871 124825952 -72369480 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 1537 205 216 0 73 chr1 124825964 124826019 -72369413 + (CATG)n Simple_repeat Simple_repeat 4 54 0 5 1537 432 320 107 54 chr1 124826106 124826311 -72369121 - B4A SINE B4 -74 218 3 5 1537 228 375 130 12 chr1 124826502 124826664 -72368768 + B3 SINE B2 2 182 -34 5 1537 380 304 86 82 chr1 124827297 124827575 -72367857 - B4 SINE B4 -18 274 31 5 1537 447 186 197 33 chr1 124827677 124827799 -72367633 + B1_Mus1 SINE Alu 1 142 -6 5 1537 360 0 0 0 chr1 124827841 124827881 -72367551 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1537 250 63 14 100 chr1 124827911 124827981 -72367451 - L1_Mus3 LINE L1 0 6638 6575 5 1537 318 247 52 0 chr1 124828741 124828838 -72366594 - Lx9 LINE L1 -8 7636 7535 5 1537 467 337 101 35 chr1 124828911 124829197 -72366235 - MLT1D LTR MaLR -194 311 7 5 1537 229 273 11 33 chr1 124829301 124829392 -72366040 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 5 1537 244 274 193 25 chr1 124829393 124829624 -72365808 - ORR1E LTR MaLR -3 416 141 5 1537 1461 256 163 65 chr1 124829707 124830229 -72365203 - RMER15 LTR ERVL 0 575 3 5 1537 278 323 7 22 chr1 124830231 124830367 -72365065 + (TATATG)n Simple_repeat Simple_repeat 2 135 0 5 1537 192 97 0 0 chr1 124830810 124830841 -72364591 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1537 264 388 23 40 chr1 124831193 124831370 -72364062 - ORR1E LTR MaLR -162 197 24 5 1537 264 289 34 26 chr1 124831478 124831595 -72363837 + CT-rich Low_complexity Low_complexity 3 120 0 5 1537 285 354 79 53 chr1 124831860 124832012 -72363420 - B3A SINE B2 -10 188 33 5 1537 5965 49 3 0 chr1 124832087 124832823 -72362609 - L1Md_F2 LINE L1 0 6582 5845 5 1537 229 140 17 17 chr1 124833126 124833184 -72362248 + A-rich Low_complexity Low_complexity 3 60 0 5 1537 208 134 87 29 chr1 124833199 124833268 -72362164 + A-rich Low_complexity Low_complexity 5 77 0 5 1537 794 326 21 21 chr1 124833507 124833742 -72361690 - B4 SINE B4 -57 235 1 5 1537 2466 92 11 0 chr1 124834927 124835274 -72360158 - L1_Mus1 LINE L1 -134 6433 6083 5 1537 756 91 0 97 chr1 124835274 124835408 -72360024 + L1_Mus1 LINE L1 6438 6558 -9 5 1537 2976 55 13 0 chr1 124835585 124835967 -72359465 - L1Md_F2 LINE L1 0 6582 6196 5 1537 657 303 122 5 chr1 124836018 124836240 -72359192 + RMER21B LTR ERV1 320 567 -275 5 1537 3341 168 18 14 chr1 124836613 124836886 -72358546 + L1_Mur1 LINE L1 4921 5198 -688 5 1537 234 0 0 0 chr1 124836886 124836912 -72358520 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1537 3341 168 18 14 chr1 124836912 124837296 -72358136 + L1_Mur1 LINE L1 5199 5580 -306 5 1537 360 279 87 53 chr1 124837395 124837603 -72357829 - B3 SINE B2 0 216 2 5 1537 6405 86 1 1 chr1 124837653 124838555 -72356877 + L1_Mus1 LINE L1 5666 6567 0 5 1537 24467 111 6 2 chr1 124838566 124843340 -72352092 + L1VL1 LINE L1 403 5196 -687 5 1537 13004 27 1 0 chr1 124843345 124844985 -72350447 + L1Md_T LINE L1 2437 4077 -1806 5 1537 867 20 0 0 chr1 124844987 124845089 -72350343 + L1Md_T LINE L1 5485 5586 -297 5 1537 8235 39 6 0 chr1 124845089 124846079 -72349353 + L1Md_T LINE L1 5587 6582 0 5 1537 830 222 89 29 chr1 124846079 124846325 -72349107 + ORR1D2 LTR MaLR 110 370 0 5 1537 286 450 32 16 chr1 124846798 124846983 -72348449 - B4 SINE B4 0 292 105 5 1537 404 313 169 51 chr1 124847496 124847809 -72347623 - RMER21B LTR ERV1 -280 562 213 5 1537 358 318 6 159 chr1 124848161 124848337 -72347095 - RSINE1 SINE B4 -10 155 7 5 1537 1049 123 0 6 chr1 124848868 124849039 -72346393 + (GGAGAA)n Simple_repeat Simple_repeat 6 175 0 5 1537 274 281 31 20 chr1 124849193 124849291 -72346141 + CT-rich Low_complexity Low_complexity 2 100 0 5 1537 35412 25 2 7 chr1 124849451 124854843 -72340589 + L1Md_A LINE L1 224 5585 -298 5 1537 8562 26 1 0 chr1 124854844 124855837 -72339595 + L1Md_A LINE L1 5587 6580 -2 5 1537 277 268 139 52 chr1 124855839 124856012 -72339420 - Tigger7 DNA MER2_type -61 2430 2243 5 1537 308 311 102 69 chr1 124856305 124856609 -72338823 + L1M4c LINE L1 800 1113 -5271 5 1537 515 78 13 0 chr1 124856648 124856725 -72338707 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1537 789 270 70 0 chr1 124856955 124857140 -72338292 + ID_B1 SINE B4 3 200 -24 5 1537 393 306 91 0 chr1 124857032 124857153 -72338279 + B1F SINE Alu 8 139 -10 5 1537 445 255 42 30 chr1 124857349 124857515 -72337917 - Lx8 LINE L1 -1024 6449 6282 5 1537 552 252 140 80 chr1 124857684 124858020 -72337412 + RLTR9A LTR ERVK 13 368 0 5 1537 750 53 0 0 chr1 124858064 124858159 -72337273 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 5 1537 309 290 10 0 chr1 124858374 124858474 -72336958 + L1M3 LINE L1 5524 5624 -559 5 1537 291 356 101 40 chr1 124859033 124859232 -72336200 - B3 SINE B2 0 216 6 6 1537 747 248 30 20 chr1 124859321 124859523 -72335909 + B3 SINE B2 3 206 -10 6 1537 810 246 13 95 chr1 124860305 124860610 -72334822 + Lx3_Mus LINE L1 38 317 -6667 6 1537 277 269 0 0 chr1 124860632 124860710 -72334722 + Lx3_Mus LINE L1 239 316 -6668 6 1537 28244 116 83 18 chr1 124860792 124861484 -72333948 + Lx3_Mus LINE L1 676 1430 -4456 6 1537 315 0 0 0 chr1 124861484 124861519 -72333913 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1537 28244 96 21 35 chr1 124861519 124864897 -72330535 + Lx3_Mus LINE L1 1431 4792 -1094 6 1537 1390 55 0 6 chr1 124864897 124865078 -72330354 + L1_Mus2 LINE L1 6383 6562 -4 6 1537 28244 96 21 35 chr1 124865078 124865675 -72329757 + Lx3_Mus LINE L1 4793 5355 -531 6 1537 4889 40 0 0 chr1 124865675 124866256 -72329176 + L1Md_F3 LINE L1 5990 6570 -14 6 1537 28244 108 22 25 chr1 124866256 124867907 -72327525 + Lx3_Mus LINE L1 5356 7009 0 6 1537 180 125 0 0 chr1 124867935 124867967 -72327465 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1537 584 295 23 11 chr1 124867967 124868142 -72327290 - ORR1E LTR MaLR -182 177 1 6 1537 496 304 88 54 chr1 124868690 124868895 -72326537 + B3A SINE B2 3 214 -2 6 1537 775 232 0 0 chr1 124868927 124869069 -72326363 + B1_Mur4 SINE Alu 1 142 -8 6 1537 582 63 0 0 chr1 124869078 124869157 -72326275 + (TAG)n Simple_repeat Simple_repeat 2 80 0 6 1537 24 53 0 0 chr1 124869157 124869195 -72326237 + AT_rich Low_complexity Low_complexity 1 38 0 6 1537 3083 45 11 0 chr1 124869359 124869738 -72325694 - L1Md_F3 LINE L1 0 6584 6202 6 1537 1421 216 47 65 chr1 124870158 124870544 -72324888 + Lx2B LINE L1 6617 6995 -5 6 1537 972 287 55 4 chr1 124870716 124870971 -72324461 - MTEb LTR MaLR -105 274 7 6 1537 752 336 32 39 chr1 124871389 124871674 -72323758 + B4A SINE B4 2 284 -8 6 1537 304 206 40 14 chr1 124871792 124871866 -72323566 - RLTR16 LTR ERVK 0 505 430 6 1537 2412 191 35 12 chr1 124871863 124872345 -72323087 - RLTR16 LTR ERVK -12 493 1 6 1537 2753 94 14 7 chr1 124872400 124872818 -72322614 - BGLII LTR ERVK 0 421 1 6 1537 554 0 15 0 chr1 124873298 124873364 -72322068 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1537 492 279 77 24 chr1 124873508 124873677 -72321755 + B3A SINE B2 5 182 -16 6 1537 746 304 15 0 chr1 124874391 124874592 -72320840 + ID_B1 SINE B4 18 221 -3 6 1537 4468 46 27 2 chr1 124874754 124875304 -72320128 + L1Md_F2 LINE L1 6008 6571 -11 6 1537 787 353 10 34 chr1 124875409 124875705 -72319727 - B4A SINE B4 0 292 4 6 1537 336 217 41 19 chr1 124875818 124875932 -72319500 + MTEb LTR MaLR 254 371 -8 6 1537 2904 93 5 5 chr1 124876101 124876522 -72318910 + BGLII LTR ERVK 1 421 0 6 1537 1081 95 0 20 chr1 124876726 124876877 -72318555 + B1_Mus1 SINE Alu 1 148 0 6 1537 7592 93 15 6 chr1 124876917 124878878 -72316554 - L1Md_F2 LINE L1 -12 6570 3716 6 1537 3051 163 77 14 chr1 124878877 124879671 -72315761 - L1Md_F LINE L1 -5669 1055 209 6 1537 1118 316 40 6 chr1 124879677 124880024 -72315408 - MTEa LTR MaLR -20 359 1 6 1537 228 344 8 16 chr1 124880371 124880498 -72314934 - L1MA4 LINE L1 -361 5939 5814 6 1537 447 283 101 20 chr1 124880619 124880767 -72314665 - B3 SINE B2 -54 162 3 6 1537 444 301 14 7 chr1 124881136 124881283 -72314149 + RSINE1 SINE B4 2 149 -16 6 1537 273 380 110 62 chr1 124882432 124882457 -72312975 - RSINE1 SINE B4 -7 158 142 6 1537 303 49 0 0 chr1 124882457 124882498 -72312934 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1537 273 380 110 62 chr1 124882498 124882618 -72312814 - RSINE1 SINE B4 -24 141 6 6 1537 24 67 0 0 chr1 124882697 124882742 -72312690 + AT_rich Low_complexity Low_complexity 1 45 0 6 1537 325 0 0 0 chr1 124883024 124883071 -72312361 + L1Md_A LINE L1 6536 6582 0 6 1537 422 305 95 28 chr1 124883893 124884072 -72311360 + B3A SINE B2 1 191 -7 6 1537 1138 58 0 0 chr1 124884101 124884239 -72311193 + B1_Mus1 SINE Alu 2 139 -9 6 1537 279 0 0 0 chr1 124884239 124884270 -72311162 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1537 742 62 0 0 chr1 124884434 124884530 -72310902 + B1_Mus2 SINE Alu 52 147 0 6 1537 971 150 0 16 chr1 124884536 124884719 -72310713 + GA-rich Low_complexity Low_complexity 1 180 0 6 1537 180 0 0 0 chr1 124884719 124884739 -72310693 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 6 1537 338 301 138 10 chr1 124884872 124885067 -72310365 + ID_B1 SINE B4 2 221 -3 6 1537 572 285 102 12 chr1 124885253 124885576 -72309856 - L1MD1 LINE L1 -280 5962 5611 6 1537 249 108 0 0 chr1 124885896 124885933 -72309499 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1537 464 316 32 20 chr1 124885933 124886137 -72309295 - B3A SINE B2 -13 203 9 6 1537 25 31 0 0 chr1 124886286 124886318 -72309114 + AT_rich Low_complexity Low_complexity 1 32 0 6 1537 1368 146 5 0 chr1 124886507 124886726 -72308706 - Lx2 LINE L1 -1 6996 6777 6 1537 3824 142 27 5 chr1 124886727 124887392 -72308040 - Lx2 LINE L1 -353 6644 5965 6 1537 198 0 0 0 chr1 124887476 124887498 -72307934 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1537 210 71 0 0 chr1 124887580 124887608 -72307824 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1537 372 292 30 25 chr1 124887646 124887843 -72307589 - L1MD LINE L1 -2916 3230 3033 6 1537 638 219 39 66 chr1 124887854 124888035 -72307397 - MTEb LTR MaLR -3 376 201 6 1537 398 118 42 56 chr1 124888046 124888189 -72307243 + (CAGAGA)n Simple_repeat Simple_repeat 2 142 0 6 1537 452 280 62 115 chr1 124888209 124888435 -72306997 - MTEb LTR MaLR -165 214 1 6 1537 335 297 34 8 chr1 124888490 124888609 -72306823 - L1MD LINE L1 -3194 2952 2831 6 1537 532 214 137 0 chr1 124888720 124888837 -72306595 - B1_Mus1 SINE Alu -5 143 11 6 1537 638 258 16 52 chr1 124888893 124889085 -72306347 + B3A SINE B2 1 185 -13 6 1537 24083 161 24 7 chr1 124889517 124892953 -72302479 - Lx LINE L1 -4 6650 3174 6 1537 180 0 0 0 chr1 124892953 124892973 -72302459 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1537 24083 164 21 10 chr1 124892973 124895746 -72299686 - Lx LINE L1 -2710 3173 369 6 1537 481 376 58 25 chr1 124895961 124896204 -72299228 + B4A SINE B4 1 251 -41 6 1537 470 82 14 0 chr1 124896868 124896941 -72298491 - Lx LINE L1 -8 6646 6573 6 1537 862 313 62 41 chr1 124897471 124897500 -72297932 - MTD LTR MaLR -16 403 368 6 1537 297 0 0 0 chr1 124897500 124897533 -72297899 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 1537 862 313 62 41 chr1 124897533 124897893 -72297539 - MTD LTR MaLR -52 367 6 6 1537 42 0 0 0 chr1 124897897 124897939 -72297493 + AT_rich Low_complexity Low_complexity 1 42 0 6 1537 769 278 117 20 chr1 124898087 124898429 -72297003 - MTEb LTR MaLR -3 376 2 6 1537 422 241 28 9 chr1 124899634 124899743 -72295689 - B1_Mur2 SINE Alu 0 149 39 6 1537 692 209 60 78 chr1 124899932 124900150 -72295282 + B3 SINE B2 1 214 -2 6 1537 346 319 79 10 chr1 124900522 124900725 -72294707 - MLT1F LTR MaLR -1 547 331 6 1537 321 339 76 46 chr1 124900942 124901180 -72294252 - L1M4 LINE L1 -1094 5052 4808 6 1537 398 304 77 65 chr1 124901653 124901899 -72293533 - L1M4 LINE L1 -2003 4143 3895 6 1537 360 111 0 0 chr1 124902101 124902155 -72293277 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1537 254 289 139 22 chr1 124902169 124902392 -72293040 - L1M4 LINE L1 -2609 3537 3289 6 1537 521 335 7 13 chr1 124902527 124902678 -72292754 - RSINE1 SINE B4 -7 158 9 6 1537 428 325 8 34 chr1 124902835 124902953 -72292479 - B3A SINE B2 -45 153 39 6 1537 207 0 0 0 chr1 124903734 124903757 -72291675 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1537 621 121 11 0 chr1 124903883 124903974 -72291458 - Lx2 LINE L1 -430 6567 6476 6 1537 1583 195 60 6 chr1 124903971 124904302 -72291130 + Lx2 LINE L1 6649 6997 0 6 1537 652 332 5 20 chr1 124904483 124904683 -72290749 + ID_B1 SINE B4 7 203 -21 6 1537 200 186 17 0 chr1 124904907 124904966 -72290466 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1537 297 51 0 0 chr1 124905462 124905501 -72289931 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1537 332 352 21 0 chr1 124905589 124905731 -72289701 + B1F SINE Alu 1 145 -4 6 1537 21 0 0 0 chr1 124905826 124905847 -72289585 + AT_rich Low_complexity Low_complexity 1 21 0 6 1537 395 147 46 56 chr1 124906034 124906142 -72289290 - L1Md_F3 LINE L1 -1 6583 6477 6 1537 293 0 0 26 chr1 124906579 124906617 -72288815 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1537 465 185 34 20 chr1 124906712 124906861 -72288571 + GA-rich Low_complexity Low_complexity 3 153 0 6 1537 372 104 0 0 chr1 124906861 124906928 -72288504 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1537 21 0 0 0 chr1 124907080 124907101 -72288331 + AT_rich Low_complexity Low_complexity 1 21 0 6 1537 301 255 101 10 chr1 124907107 124907206 -72288226 - B3 SINE B2 -1 215 108 6 1537 241 207 86 0 chr1 124907297 124907355 -72288077 - L1MC LINE L1 -2439 5603 5541 6 1537 226 316 43 25 chr1 124907399 124907561 -72287871 - L1M4 LINE L1 -701 5477 5313 6 1537 414 284 31 19 chr1 124907771 124907988 -72287444 - L1M4 LINE L1 -3273 2867 2649 6 1537 1136 95 28 0 chr1 124908080 124908259 -72287173 - L1Md_F2 LINE L1 -1 6581 6398 6 1537 215 61 30 0 chr1 124908413 124908446 -72286986 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1537 215 321 47 23 chr1 124908463 124908549 -72286883 - PB1D10 SINE Alu 0 117 30 6 1537 516 32 0 0 chr1 124909024 124909086 -72286346 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1537 7996 53 2 7 chr1 124909593 124910894 -72284538 - L1Md_F2 LINE L1 0 6582 5288 6 192 12050 32 1 1 chr1 124910888 124913019 -72282413 - L1Md_T LINE L1 -1 6581 4452 6 1538 8250 44 13 0 chr1 124912995 124914026 -72281406 - L1Md_T LINE L1 -587 5296 4253 6 1538 6489 61 1 10 chr1 124914021 124914887 -72280545 + L1Md_T LINE L1 3377 4234 -1649 6 1538 2152 202 101 47 chr1 124916676 124916932 -72278500 - L1_Mur3 LINE L1 -1033 4847 4615 6 1538 591 27 0 0 chr1 124916932 124917005 -72278427 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1538 2152 202 101 47 chr1 124917005 124917365 -72278067 - L1_Mur3 LINE L1 -1266 4614 4202 6 1538 473 32 16 0 chr1 124917365 124917428 -72278004 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1538 2152 202 101 47 chr1 124917428 124917491 -72277941 - L1_Mur3 LINE L1 -1679 4201 4131 6 1538 1542 249 66 35 chr1 124917491 124918003 -72277429 + RLTR12B LTR ERVK 1 528 0 6 1538 282 95 0 0 chr1 124918119 124918161 -72277271 + (CAA)n Simple_repeat Simple_repeat 2 43 0 6 1538 366 303 49 131 chr1 124918844 124919395 -72276037 + L1M5 LINE L1 2875 3396 -2750 6 1538 321 286 9 9 chr1 124919424 124919537 -72275895 + MYSERV6-int LTR ERVK 455 567 -8392 6 1538 1226 226 122 28 chr1 124919597 124919740 -72275692 + RMER17C LTR ERVK 16 97 -313 7 1538 545 28 14 0 chr1 124919740 124919811 -72275621 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1538 1226 214 112 28 chr1 124919811 124920094 -72275338 + RMER17C LTR ERVK 98 400 -10 7 1538 1280 206 100 85 chr1 124920098 124920222 -72275210 + MYSERV6-int LTR ERVK 1223 1348 -7611 6 1538 200 59 29 0 chr1 124920222 124920256 -72275176 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1538 1280 206 100 85 chr1 124920256 124920602 -72274830 + MYSERV6-int LTR ERVK 1349 1700 -7259 6 1538 462 132 8 24 chr1 124920606 124920730 -72274702 + (CAGAGA)n Simple_repeat Simple_repeat 3 124 0 7 1538 1955 271 45 60 chr1 124920804 124921706 -72273726 + MYSERV16_I-int LTR ERVK 8 896 -1430 7 1538 399 233 8 24 chr1 124921700 124921823 -72273609 + MYSERV-int LTR ERVK 5304 5424 -1126 7 1538 1058 211 48 12 chr1 124921841 124922091 -72273341 + MYSERV6-int LTR ERVK 8138 8396 -563 7 1538 499 116 0 0 chr1 124922093 124922162 -72273270 + L1_Mus4 LINE L1 6414 6482 -154 7 1538 611 150 9 9 chr1 124922160 124922274 -72273158 + Lx LINE L1 6539 6652 -2 7 1538 1156 214 150 7 chr1 124922274 124922635 -72272797 + MYSERV16_I-int LTR ERVK 6001 6377 -173 7 1538 1783 193 153 19 chr1 124922694 124923087 -72272345 + RLTR12B LTR ERVK 1 442 -86 7 1538 312 70 0 0 chr1 124923087 124923130 -72272302 + (TAA)n Simple_repeat Simple_repeat 3 45 0 7 1538 1783 193 153 19 chr1 124923130 124923201 -72272231 + RLTR12B LTR ERVK 443 526 -2 7 1538 2700 216 28 17 chr1 124923202 124923839 -72271593 - L1_Mur3 LINE L1 -1745 4135 3492 7 1538 386 317 99 9 chr1 124926046 124926269 -72269163 - MER2 DNA MER2_type -1 344 102 7 1538 3009 233 45 95 chr1 124926296 124927382 -72268050 + Lx9 LINE L1 6603 7634 -10 7 1538 188 295 46 62 chr1 124928103 124928168 -72267264 + L2 LINE L2 2850 2913 -506 7 1538 258 32 0 0 chr1 124928199 124928230 -72267202 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1538 495 33 0 0 chr1 124928230 124928290 -72267142 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1538 329 353 17 8 chr1 124928681 124928801 -72266631 + B3A SINE B2 16 136 -62 7 1538 669 158 27 7 chr1 124928801 124928948 -72266484 + T-rich Low_complexity Low_complexity 5 154 0 7 1538 3050 245 30 84 chr1 124928967 124929125 -72266307 - Lx7 LINE L1 0 7696 7523 7 1538 234 91 0 0 chr1 124929125 124929158 -72266274 + (ATATG)n Simple_repeat Simple_repeat 3 35 0 7 1538 3050 245 30 84 chr1 124929158 124929923 -72265509 - Lx7 LINE L1 -174 7522 6823 7 1538 416 238 46 78 chr1 124930014 124930226 -72265206 + L1M2 LINE L1 4007 4213 -1927 7 1538 564 248 29 22 chr1 124930337 124930508 -72264924 + B3A SINE B2 2 179 -16 7 1538 361 289 33 58 chr1 124930952 124931073 -72264359 + B3A SINE B2 7 124 -74 7 1538 234 91 0 0 chr1 124931074 124931107 -72264325 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1538 2136 47 0 0 chr1 124931719 124931975 -72263457 + L1Md_F2 LINE L1 5330 5585 -298 7 1538 7921 52 6 3 chr1 124931976 124932969 -72262463 + L1Md_F2 LINE L1 5587 6582 0 7 1538 2094 178 41 34 chr1 124934020 124934518 -72260914 + MYSERV16_I-int LTR ERVK 1 442 -1884 7 1538 3219 107 2 2 chr1 124934527 124934988 -72260444 - L1_Mus4 LINE L1 -2 6634 6174 7 1538 2002 231 44 44 chr1 124935049 124935574 -72259858 - RMER13B LTR ERVK -112 796 272 7 1538 1653 209 31 45 chr1 124935593 124936038 -72259394 - RMER17B LTR ERVK -519 439 1 7 1538 1245 198 15 93 chr1 124936039 124936469 -72258963 + MYSERV16_I-int LTR ERVK 640 932 -1394 7 1538 5935 138 59 35 chr1 124936467 124937041 -72258391 + MYSERV16_I-int LTR ERVK 1063 1634 -692 7 1538 551 138 49 0 chr1 124937041 124937164 -72258268 + L1_Mus3 LINE L1 6510 6638 0 7 1538 5935 138 59 35 chr1 124937164 124937799 -72257633 + MYSERV16_I-int LTR ERVK 1635 2301 -25 7 1538 308 94 0 19 chr1 124937875 124937929 -72257503 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1538 237 326 0 73 chr1 124937929 124938025 -72257407 + RLTR20C LTR ERVK 446 534 0 7 1538 358 408 31 22 chr1 124938031 124938259 -72257173 + B4A SINE B4 60 289 -3 7 1538 422 163 10 0 chr1 124938332 124938430 -72257002 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1538 222 372 28 68 chr1 124938943 124939119 -72256313 + B4A SINE B4 3 171 -121 7 1538 215 220 20 0 chr1 124939649 124939699 -72255733 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1538 757 246 142 32 chr1 124940819 124941097 -72254335 - MTEa LTR MaLR 0 379 60 7 1538 273 355 11 11 chr1 124941052 124941146 -72254286 + B4A SINE B4 187 280 -12 7 1538 347 298 17 122 chr1 124941877 124942049 -72253383 - B4A SINE B4 -136 156 3 7 1538 645 86 0 0 chr1 124942823 124942916 -72252516 + (TG)n Simple_repeat Simple_repeat 1 93 0 7 1538 380 348 34 0 chr1 124942925 124943043 -72252389 - RSINE1 SINE B4 -41 124 3 7 1538 468 308 52 22 chr1 124943347 124943483 -72251949 - RSINE1 SINE B4 0 165 26 7 1538 501 291 30 48 chr1 124944637 124944803 -72250629 - RSINE1 SINE B4 0 165 3 7 1538 24 0 0 0 chr1 124945227 124945251 -72250181 + AT_rich Low_complexity Low_complexity 1 24 0 7 1538 378 258 173 55 chr1 124945264 124945620 -72249812 + L1M3 LINE L1 4741 5137 -1003 7 1538 342 319 17 17 chr1 124946051 124946166 -72249266 + L1M3 LINE L1 5172 5286 -857 7 1538 238 324 72 81 chr1 124946648 124946883 -72248549 + RMER2 LTR ERV1 335 567 0 7 1538 1449 251 35 63 chr1 124946957 124947446 -72247986 + MTC-int LTR MaLR 678 1152 -106 7 1538 411 268 77 72 chr1 124947447 124947668 -72247764 + MTD-int LTR MaLR 1037 1258 0 7 1538 1656 197 105 19 chr1 124947668 124948041 -72247391 + MTD LTR MaLR 1 405 -14 7 1538 853 9 19 0 chr1 124948883 124948989 -72246443 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 7 1538 305 283 0 0 chr1 124949031 124949091 -72246341 - PB1D10 SINE Alu -36 81 22 7 1538 614 318 89 22 chr1 124949491 124949761 -72245671 - B4A SINE B4 -4 288 1 7 1538 228 243 0 26 chr1 124949784 124949809 -72245623 + A-rich Low_complexity Low_complexity 4 28 0 7 1538 1227 34 7 0 chr1 124949809 124949956 -72245476 + B1_Mus1 SINE Alu 1 148 0 7 1538 228 243 0 26 chr1 124949956 124950006 -72245426 + A-rich Low_complexity Low_complexity 29 77 0 7 1538 180 317 96 29 chr1 124950041 124950145 -72245287 + MIRc SINE MIR 50 160 -108 7 1538 356 286 14 36 chr1 124950382 124950520 -72244912 + CT-rich Low_complexity Low_complexity 4 138 0 7 1538 231 260 20 0 chr1 124950678 124950728 -72244704 - ID4_ SINE ID -11 72 22 7 1538 211 297 125 0 chr1 124950728 124950742 -72244690 - ID SINE ID -151 73 2 7 1538 483 259 6 93 chr1 124951215 124951377 -72244055 + B1_Mur1 SINE Alu 1 148 -1 7 1538 233 243 0 14 chr1 124951377 124951448 -72243984 + A-rich Low_complexity Low_complexity 1 70 0 7 1538 515 311 12 24 chr1 124951509 124951674 -72243758 + RSINE1 SINE B4 3 165 0 7 1538 1593 162 338 35 chr1 124951803 124952264 -72243168 - MT2B LTR ERVL 0 601 1 7 1538 4303 109 76 7 chr1 124952579 124953251 -72242181 + Lx3_Mus LINE L1 6286 7003 -6 7 1538 204 40 0 0 chr1 124953455 124953480 -72241952 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 1538 481 276 47 0 chr1 124953581 124953708 -72241724 + B4 SINE B4 69 201 -91 7 1538 257 149 0 78 chr1 124955136 124955187 -72240245 - B2_Mm2 SINE B2 -146 49 3 7 1538 240 327 35 24 chr1 124955471 124955640 -72239792 - L1MC3 LINE L1 -303 7482 7312 7 1538 862 245 123 15 chr1 124955732 124955993 -72239439 + B4A SINE B4 1 289 -3 7 1538 665 281 11 17 chr1 124956812 124956993 -72238439 - B3A SINE B2 -18 180 1 7 1538 386 238 159 32 chr1 124957643 124957769 -72237663 + B3A SINE B2 2 143 -55 7 1538 1332 45 0 0 chr1 124957787 124957963 -72237469 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 1538 245 75 0 24 chr1 124958125 124958166 -72237266 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 7 1538 741 259 0 0 chr1 124958302 124958441 -72236991 - RSINE1 SINE B4 -15 150 12 7 1538 242 321 12 0 chr1 124958366 124958450 -72236982 - B2_Mm1t SINE B2 -107 86 2 7 1538 339 386 0 71 chr1 124958709 124958879 -72236553 + RSINE1 SINE B4 2 159 -6 7 1538 315 65 0 0 chr1 124958989 124959035 -72236397 + (A)n Simple_repeat Simple_repeat 1 46 0 7 1538 530 322 23 17 chr1 124959240 124959414 -72236018 + ORR1E LTR MaLR 3 177 -182 7 1538 360 280 61 46 chr1 124959431 124959562 -72235870 + ORR1E LTR MaLR 239 371 -8 7 1538 297 75 0 0 chr1 124959618 124959658 -72235774 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 7 1538 350 236 144 16 chr1 124960207 124960332 -72235100 - MER90a LTR ERV1 -253 361 221 7 1538 254 289 0 0 chr1 124960434 124960486 -72234946 + polypyrimidine Low_complexity Low_complexity 1 52 0 7 1538 383 0 21 0 chr1 124960569 124960616 -72234816 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1538 292 280 27 70 chr1 124961402 124961503 -72233929 + MTEa LTR MaLR 2 100 -279 7 1538 1326 246 29 16 chr1 124961509 124961819 -72233613 + MTEa LTR MaLR 66 379 0 7 1538 23 0 0 0 chr1 124962455 124962478 -72232954 + AT_rich Low_complexity Low_complexity 1 23 0 7 1538 783 83 0 0 chr1 124962944 124963052 -72232380 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 7 1538 871 238 33 47 chr1 124963057 124963357 -72232075 - RMER17C LTR ERVK -30 380 85 7 1538 665 242 19 35 chr1 124963346 124963603 -72231829 - RMER17C LTR ERVK -157 253 1 7 1538 13629 171 64 60 chr1 124963609 124964302 -72231130 - RMER17C-int LTR ERVK -6 3232 2488 7 1538 333 0 0 0 chr1 124964302 124964339 -72231093 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 7 1538 13629 171 64 60 chr1 124964339 124965962 -72229470 - RMER17C-int LTR ERVK -751 2487 866 7 1538 483 18 0 0 chr1 124965962 124966018 -72229414 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1538 348 24 0 0 chr1 124966018 124966058 -72229374 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1538 13629 171 64 60 chr1 124966058 124966959 -72228473 - RMER17C-int LTR ERVK -2373 865 2 7 1538 351 0 0 0 chr1 124966980 124967019 -72228413 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 7 1538 609 110 0 0 chr1 124967019 124967110 -72228322 + (GA)n Simple_repeat Simple_repeat 1 91 0 7 1538 1539 209 12 82 chr1 124967110 124967537 -72227895 - RMER17C LTR ERVK -13 397 1 7 1538 231 159 0 22 chr1 124967640 124967685 -72227747 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 7 1538 465 332 63 49 chr1 124968190 124968475 -72226957 + B4A SINE B4 4 292 0 7 1538 435 324 34 23 chr1 124968806 124968983 -72226449 - B3A SINE B2 -16 182 4 7 1538 947 294 75 18 chr1 124969008 124969171 -72226261 + MTE2b LTR MaLR 1 162 -217 7 1538 7691 33 0 1 chr1 124969171 124970086 -72225346 + L1Md_A LINE L1 5668 6581 -1 7 1538 947 294 75 18 chr1 124970086 124970203 -72225229 + MTE2b LTR MaLR 163 297 -82 7 1538 242 100 67 0 chr1 124970373 124970433 -72224999 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 1538 504 281 23 8 chr1 124970763 124970892 -72224540 + ID_B1 SINE B4 85 215 -9 7 1538 860 286 26 51 chr1 124971102 124971375 -72224057 + B4A SINE B4 4 269 -23 7 1538 444 37 0 0 chr1 124971375 124971429 -72224003 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1538 1138 325 26 28 chr1 124972043 124972395 -72223037 + ORR1E LTR MaLR 9 359 0 8 1538 936 221 137 32 chr1 124973063 124973365 -72222067 + RMER10B LTR ERVL 19 398 0 8 1538 574 305 28 51 chr1 124973381 124973595 -72221837 + B4 SINE B4 81 289 -3 8 1538 1104 67 0 0 chr1 124973621 124973771 -72221661 + (GGGAGA)n Simple_repeat Simple_repeat 1 150 0 8 1538 1106 193 32 5 chr1 124974059 124974278 -72221154 + URR1A DNA MER1_type 2 226 0 8 1538 590 283 14 91 chr1 124974923 124975219 -72220213 - B4A SINE B4 -19 273 1 8 1538 238 189 41 21 chr1 124975283 124975380 -72220052 + GA-rich Low_complexity Low_complexity 1 99 0 8 1538 594 203 8 38 chr1 124975569 124975702 -72219730 + MTD LTR MaLR 6 134 -285 8 1538 227 342 172 32 chr1 124976217 124976374 -72219058 + B3 SINE B2 2 180 -36 8 1538 23 0 0 0 chr1 124976397 124976420 -72219012 + AT_rich Low_complexity Low_complexity 1 23 0 8 1538 3080 64 25 0 chr1 124976696 124977104 -72218328 - L1_Mus2 LINE L1 -397 6169 5752 8 1538 2624 85 0 78 chr1 124977104 124977512 -72217920 + L1_Mus2 LINE L1 6191 6566 0 8 1538 246 62 0 0 chr1 124977537 124977569 -72217863 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1538 261 163 0 0 chr1 124977853 124977896 -72217536 - Lx7 LINE L1 -587 7109 7067 8 1538 504 0 0 0 chr1 124977915 124977971 -72217461 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1538 23 68 0 0 chr1 124978053 124978097 -72217335 + AT_rich Low_complexity Low_complexity 1 44 0 8 1538 393 359 29 29 chr1 124978448 124978623 -72216809 + B3A SINE B2 9 183 -15 8 1538 519 31 0 0 chr1 124978780 124978845 -72216587 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1538 257 355 12 49 chr1 124978896 124979059 -72216373 - B3A SINE B2 0 198 42 8 1538 391 247 63 23 chr1 124979101 124979275 -72216157 - Lx7 LINE L1 0 7696 7516 8 1538 1089 231 36 4 chr1 124979305 124979553 -72215879 - Lx7 LINE L1 -346 7350 7095 8 1538 1238 202 18 25 chr1 124979557 124979836 -72215596 + L1_Mur3 LINE L1 4739 5015 -865 8 1538 745 271 43 38 chr1 124980688 124980899 -72214533 - ID_B1 SINE B4 -9 215 4 8 1538 225 0 0 0 chr1 124981950 124981975 -72213457 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1538 686 290 19 16 chr1 124982358 124982661 -72212771 + MTD LTR MaLR 53 405 -14 8 1538 465 319 49 16 chr1 124982717 124982822 -72212610 - B4 SINE B4 -100 192 83 8 1538 231 36 0 0 chr1 124982822 124982850 -72212582 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1538 465 319 49 16 chr1 124982850 124982929 -72212503 - B4 SINE B4 -210 82 2 8 1538 343 321 0 12 chr1 124983436 124983521 -72211911 + B4 SINE B4 1 84 -208 8 1538 204 40 0 0 chr1 124983521 124983546 -72211886 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1538 441 239 61 44 chr1 124983562 124983676 -72211756 + B4 SINE B4 82 197 -95 8 1538 549 295 39 28 chr1 124984151 124984329 -72211103 - B3A SINE B2 -16 182 3 8 1538 477 354 60 13 chr1 124984439 124984737 -72210695 + HAL1 LINE L1 1513 1824 -683 8 1538 543 269 30 134 chr1 124985012 124985214 -72210218 - B3A SINE B2 0 198 2 8 1538 204 143 0 0 chr1 124985233 124985275 -72210157 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 8 1538 395 326 82 0 chr1 124985863 124986010 -72209422 + RSINE1 SINE B4 4 162 -3 8 1538 1275 171 88 25 chr1 124986183 124986330 -72209102 - Lx7 LINE L1 -1 7695 7536 8 1538 458 33 17 0 chr1 124986330 124986390 -72209042 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 8 1538 1275 171 88 25 chr1 124986390 124986559 -72208873 - Lx7 LINE L1 -161 7535 7360 8 1538 2266 246 75 85 chr1 124986588 124986652 -72208780 - Lx7 LINE L1 -989 6707 6652 8 1538 339 25 0 0 chr1 124986652 124986692 -72208740 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1538 2266 246 75 85 chr1 124986692 124987426 -72208006 - Lx7 LINE L1 -1045 6651 5917 8 1538 496 301 99 35 chr1 124988220 124988413 -72207019 + B4 SINE B4 35 239 -53 8 1538 435 281 153 63 chr1 124988403 124988593 -72206839 + B3 SINE B2 7 213 -3 8 1538 288 0 0 0 chr1 124988634 124988666 -72206766 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1538 1820 213 121 13 chr1 124989151 124989607 -72205825 + RLTR12B LTR ERVK 1 505 -23 8 1538 189 0 0 0 chr1 124990087 124990108 -72205324 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1538 507 275 22 37 chr1 124990703 124990733 -72204699 + ID SINE ID 53 80 -144 8 1538 236 319 23 124 chr1 124990733 124990862 -72204570 + PB1D10 SINE Alu 1 116 -1 8 1538 485 332 41 27 chr1 124991108 124991313 -72204119 - B3A SINE B2 -2 214 4 8 1538 431 323 119 31 chr1 124991639 124991866 -72203566 + B4A SINE B4 5 251 -41 8 1538 414 0 0 0 chr1 124991909 124991955 -72203477 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1538 336 48 0 0 chr1 124991955 124991996 -72203436 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1538 4025 158 35 1 chr1 124992080 124992788 -72202644 + Lx2 LINE L1 6266 6997 0 8 1538 911 320 151 38 chr1 124992848 124993403 -72202029 + MER73 LTR ERVL 12 629 -15 8 1538 227 380 9 0 chr1 124993521 124993634 -72201798 - ID_B1 SINE B4 -20 204 91 8 1538 499 196 41 82 chr1 124993841 124993963 -72201469 - MTEa LTR MaLR -262 117 1 8 1538 322 77 62 0 chr1 124994871 124994936 -72200496 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 8 1538 314 308 114 8 chr1 124994984 124995115 -72200317 - B4A SINE B4 -42 250 106 8 1538 377 299 64 77 chr1 124995185 124995341 -72200091 - B4A SINE B4 -138 154 1 8 1538 265 233 30 15 chr1 124995637 124995662 -72199770 + ORR1B1-int LTR MaLR 621 647 -862 8 1538 896 83 0 0 chr1 124995662 124995782 -72199650 + B1_Mus1 SINE Alu 2 121 -27 8 1538 648 285 117 27 chr1 124996178 124996434 -72198998 - B4 SINE B4 -9 283 5 8 1538 364 367 73 47 chr1 124996451 124996659 -72198773 + MLT1C LTR MaLR 116 330 -137 8 1538 759 209 153 0 chr1 124996659 124996855 -72198577 - URR1A DNA MER1_type 0 226 1 8 1538 364 367 73 47 chr1 124996855 124996989 -72198443 + MLT1C LTR MaLR 331 466 -1 8 1538 30 0 0 0 chr1 124996990 124997020 -72198412 + AT_rich Low_complexity Low_complexity 1 30 0 8 1538 222 286 0 87 chr1 124997616 124997708 -72197724 + B1F1 SINE Alu 14 97 -52 8 1538 222 224 17 17 chr1 124997809 124997868 -72197564 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1538 28 0 0 0 chr1 124997905 124997933 -72197499 + AT_rich Low_complexity Low_complexity 1 28 0 8 1538 322 241 11 67 chr1 124998904 124998993 -72196439 + PB1D10 SINE Alu 24 107 -10 8 1538 264 311 8 48 chr1 124998993 124999029 -72196403 + ID_B1 SINE B4 105 224 0 8 1538 183 42 0 0 chr1 124999296 124999320 -72196112 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 8 1538 300 226 127 63 chr1 124999322 124999464 -72195968 + MLT2B4 LTR ERVL 13 163 -393 8 1538 281 276 34 22 chr1 124999519 124999608 -72195824 + MLT2B4 LTR ERVL 256 345 -211 8 1538 536 283 47 58 chr1 124999803 124999994 -72195438 - B4A SINE B4 0 292 104 8 1538 304 302 22 55 chr1 125000009 125000100 -72195332 - B4A SINE B4 -75 90 3 1 1538 201 147 0 0 chr1 125000391 125000425 -72195007 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1538 555 302 71 36 chr1 125000918 125001116 -72194316 - B3A SINE B2 -4 212 1 3 1538 242 349 76 38 chr1 125001261 125001419 -72194013 - L2 LINE L2 -428 2991 2828 4 1538 887 294 43 40 chr1 125001939 125002133 -72193299 - ORR1E LTR MaLR -54 305 106 5 1538 2307 157 15 17 chr1 125002133 125002541 -72192891 + MTB_Mm LTR MaLR 1 407 0 6 1538 887 294 43 40 chr1 125002541 125002650 -72192782 - ORR1E LTR MaLR -254 105 2 5 1538 482 266 13 92 chr1 125003387 125003540 -72191892 + B3A SINE B2 15 155 -43 7 1538 411 21 0 0 chr1 125003543 125003591 -72191841 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1538 509 0 16 0 chr1 125003598 125003659 -72191773 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1538 25 31 0 0 chr1 125003971 125004003 -72191429 + AT_rich Low_complexity Low_complexity 1 32 0 1 1538 450 246 105 40 chr1 125004519 125004671 -72190761 - RSINE1 SINE B4 0 165 4 1 1538 774 321 59 56 chr1 125004862 125005083 -72190349 + B4 SINE B4 1 220 -72 1 1538 189 0 0 0 chr1 125005083 125005104 -72190328 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1538 774 321 59 56 chr1 125005104 125005169 -72190263 + B4 SINE B4 221 288 -4 1 1538 9430 119 32 12 chr1 125005871 125008218 -72187214 + Lx3_Mus LINE L1 4466 6862 -147 1 1538 6651 55 2 2 chr1 125008228 125009067 -72186365 - L1Md_F2 LINE L1 0 6582 5744 1 1538 570 140 0 27 chr1 125009099 125009209 -72186223 + Lx3_Mus LINE L1 6872 6978 -3 1 1538 292 285 116 25 chr1 125009310 125009412 -72186020 + B1_Mur1 SINE Alu 8 116 -34 1 1538 432 319 70 60 chr1 125009490 125009690 -72185742 + B3 SINE B2 1 202 -14 1 1538 343 323 113 33 chr1 125009686 125009961 -72185471 - Charlie10 DNA MER1_type -723 2099 1803 1 1538 513 0 0 0 chr1 125010124 125010181 -72185251 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1538 342 0 0 0 chr1 125010181 125010218 -72185214 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1538 261 0 0 0 chr1 125010218 125010246 -72185186 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1538 1036 290 31 31 chr1 125010873 125011222 -72184210 - ORR1E LTR MaLR -10 349 1 2 1538 481 341 97 11 chr1 125011916 125012091 -72183341 - B4A SINE B4 -102 190 1 2 1538 404 330 94 37 chr1 125012389 125012634 -72182798 - LTR41B LTR ERVL 0 758 500 2 1538 444 265 135 26 chr1 125013038 125013387 -72182045 + L1M2 LINE L1 2654 3040 -3103 2 1538 585 320 56 9 chr1 125013452 125013733 -72181699 + Lx7 LINE L1 5511 5840 -1856 2 1538 474 49 0 0 chr1 125013733 125013794 -72181638 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1538 585 325 73 36 chr1 125013794 125014081 -72181351 + Lx7 LINE L1 5841 6130 -1566 2 1538 1299 196 29 44 chr1 125014080 125014132 -72181300 + Lx7 LINE L1 3001 3050 -2830 2 1538 1031 170 82 5 chr1 125014132 125014339 -72181093 + URR1A DNA MER1_type 2 224 -2 2 1538 1299 196 29 44 chr1 125014339 125014671 -72180761 + Lx7 LINE L1 3051 3379 -2501 2 1538 830 102 0 8 chr1 125014747 125014875 -72180557 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 3 1538 455 228 109 94 chr1 125014997 125015240 -72180192 - RMER2 LTR ERV1 -207 360 5 3 1538 7465 206 27 177 chr1 125015242 125016121 -72179311 + Lx7 LINE L1 3369 4278 -1602 2 1538 243 0 0 0 chr1 125016121 125016148 -72179284 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1538 7465 206 27 177 chr1 125016148 125017158 -72178274 + Lx7 LINE L1 4279 5149 -731 2 1538 1626 206 33 0 chr1 125017158 125017493 -72177939 + ORR1A1 LTR MaLR 1 346 0 3 1538 8869 175 53 41 chr1 125017493 125017914 -72177518 + ORR1A1-int LTR MaLR 1 380 -1583 3 1538 366 23 0 0 chr1 125017914 125017957 -72177475 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1538 1092 97 0 0 chr1 125017957 125018101 -72177331 - B1_Mus2 SINE Alu -3 144 1 3 1538 8869 175 53 41 chr1 125018101 125019619 -72175813 + ORR1A1-int LTR MaLR 381 1962 -1 3 1538 2061 159 3 0 chr1 125019619 125019945 -72175487 + ORR1A2 LTR MaLR 1 327 0 3 1538 7465 215 31 143 chr1 125019945 125020950 -72174482 + Lx7 LINE L1 5150 6171 -1525 2 1538 1145 210 52 0 chr1 125020958 125021187 -72174245 + Lx7 LINE L1 6284 6524 -936 2 1538 1454 197 62 79 chr1 125021190 125021543 -72173889 + ORR1B1 LTR MaLR 48 394 0 3 1538 1535 186 35 32 chr1 125021546 125021862 -72173570 + Lx7 LINE L1 6524 6840 -620 2 1538 1386 260 38 19 chr1 125021859 125022232 -72173200 + Lx7 LINE L1 6963 7342 -354 3 1538 31 0 0 0 chr1 125022262 125022293 -72173139 + AT_rich Low_complexity Low_complexity 1 31 0 3 1538 503 313 82 61 chr1 125022623 125023388 -72172044 + L1MA7 LINE L1 4519 5299 -844 4 1538 480 125 0 0 chr1 125023508 125023580 -72171852 + B2_Mm2 SINE B2 3 74 -121 4 1538 424 321 46 31 chr1 125023607 125023932 -72171500 + L1MA7 LINE L1 5452 5781 -519 4 1538 408 104 0 0 chr1 125023948 125024015 -72171417 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1538 245 163 23 0 chr1 125024052 125024095 -72171337 + L1MA7 LINE L1 5948 5991 -300 4 1538 791 101 103 45 chr1 125025100 125025255 -72170177 - L1Md_F2 LINE L1 -19 6563 6400 4 1538 31 0 0 0 chr1 125025850 125025881 -72169551 + AT_rich Low_complexity Low_complexity 1 31 0 4 1538 225 0 0 0 chr1 125025909 125025934 -72169498 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1538 874 97 113 0 chr1 125025949 125026073 -72169359 + B1_Mus1 SINE Alu 1 138 -10 4 1538 666 0 0 0 chr1 125026073 125026147 -72169285 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 4 1538 4213 47 6 9 chr1 125026465 125027002 -72168430 - L1Md_F2 LINE L1 -2 6580 6046 4 1538 418 325 51 0 chr1 125027324 125027441 -72167991 + RSINE1 SINE B4 8 130 -35 4 1538 240 271 14 0 chr1 125027458 125027528 -72167904 + CT-rich Low_complexity Low_complexity 2 72 0 5 1538 21 36 0 0 chr1 125027539 125027567 -72167865 + AT_rich Low_complexity Low_complexity 1 28 0 5 1538 1013 280 96 10 chr1 125027976 125028290 -72167142 + ORR1E LTR MaLR 13 353 -6 5 1538 235 339 15 0 chr1 125028397 125028462 -72166970 - MER2 DNA MER2_type -271 74 9 5 1538 7420 67 6 0 chr1 125028777 125029724 -72165708 - L1_Mus1 LINE L1 0 6567 5615 5 1538 409 164 0 0 chr1 125029713 125029780 -72165652 + L1_Mm LINE L1 4961 5027 -856 5 1538 5016 100 15 3 chr1 125029893 125030625 -72164807 - Lx3_Mus LINE L1 0 7009 6269 5 1538 3988 123 69 54 chr1 125030625 125031437 -72163995 + RLTR13C2 LTR ERVK 1 797 -226 5 1538 4297 62 9 12 chr1 125031437 125032008 -72163424 + L1Md_F2 LINE L1 6014 6582 0 5 1538 1375 248 127 131 chr1 125032008 125032223 -72163209 + RLTR13C2 LTR ERVK 798 1023 0 5 1538 28335 103 48 17 chr1 125032225 125037242 -72158190 - Lx3_Mus LINE L1 -737 6272 1118 5 1538 5925 216 40 36 chr1 125037455 125038825 -72156607 + Lx2B LINE L1 5623 6997 -3 6 1538 25 75 0 0 chr1 125039025 125039078 -72156354 + AT_rich Low_complexity Low_complexity 1 53 0 6 1538 474 337 58 33 chr1 125039120 125039335 -72156097 - B3A SINE B2 0 216 1 6 1538 481 279 34 102 chr1 125039864 125040040 -72155392 + RSINE1 SINE B4 2 165 0 6 1538 2454 276 92 18 chr1 125040567 125041455 -72153977 + RMER1C Other Other 42 1323 -19 6 1538 3131 165 50 59 chr1 125041498 125042612 -72152820 + L1_Mur1 LINE L1 119 1521 -4365 6 192 8682 108 15 4 chr1 125042607 125042805 -72152627 + Lx3_Mus LINE L1 5708 5906 -1103 6 1539 243 0 0 0 chr1 125042805 125042832 -72152600 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1539 8682 108 15 4 chr1 125042832 125043921 -72151511 + Lx3_Mus LINE L1 5907 7009 0 6 1539 572 316 61 17 chr1 125045840 125046020 -72149412 - B3A SINE B2 -5 193 6 6 1539 1416 196 30 20 chr1 125046717 125047019 -72148413 - ORR1B2 LTR MaLR -4 363 59 6 1539 246 321 0 0 chr1 125047043 125047099 -72148333 + RSINE1 SINE B4 88 143 -22 7 1539 27 0 0 0 chr1 125047346 125047373 -72148059 + AT_rich Low_complexity Low_complexity 1 27 0 7 1539 601 196 78 28 chr1 125048561 125048703 -72146729 + B1_Mur1 SINE Alu 1 149 0 7 1539 419 295 139 49 chr1 125049094 125049361 -72146071 - RMER13A LTR ERVK -482 378 88 7 1539 29 0 0 0 chr1 125049980 125050009 -72145423 + AT_rich Low_complexity Low_complexity 1 29 0 7 1539 311 107 35 23 chr1 125050030 125050116 -72145316 - L1_Mus4 LINE L1 -1 6635 6549 7 1539 493 287 32 26 chr1 125051032 125051179 -72144253 - RLTR18B LTR ERVK 0 512 365 7 1539 2760 187 72 2 chr1 125051179 125051269 -72144163 - RLTR20D LTR ERVK 0 568 479 7 1539 414 0 0 0 chr1 125051269 125051315 -72144117 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1539 2760 187 72 2 chr1 125051315 125051755 -72143677 - RLTR20D LTR ERVK -90 478 2 7 1539 351 195 33 109 chr1 125051756 125051848 -72143584 - RLTR18B LTR ERVK -143 369 285 7 1539 1451 242 55 103 chr1 125051848 125051904 -72143528 - MTC LTR MaLR 0 419 367 7 1539 1088 68 0 0 chr1 125051904 125052051 -72143381 + L1_Mus2 LINE L1 6418 6564 -2 8 1539 1851 186 63 29 chr1 125052051 125052431 -72143001 - MTC LTR MaLR -44 377 4 7 1539 347 264 11 0 chr1 125052436 125052523 -72142909 - RLTR18B LTR ERVK -225 287 200 7 1539 637 260 171 30 chr1 125052518 125052752 -72142680 - RLTR18B LTR ERVK -242 270 4 8 1539 227 145 43 14 chr1 125052951 125053021 -72142411 + CT-rich Low_complexity Low_complexity 4 75 0 8 1539 813 246 46 21 chr1 125053943 125054180 -72141252 + RMER5 LTR ERV1 33 275 -259 8 1539 443 322 10 119 chr1 125054277 125054471 -72140961 + B3A SINE B2 9 181 -14 8 1539 690 260 48 32 chr1 125054565 125054772 -72140660 - Lx4B LINE L1 -4 7054 6749 8 1539 261 312 84 28 chr1 125055152 125055330 -72140102 + MER5A DNA MER1_type 1 188 -1 8 1539 493 340 7 0 chr1 125055914 125056055 -72139377 + B3A SINE B2 1 142 -56 8 1539 440 86 0 14 chr1 125056061 125056132 -72139300 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1539 21 82 0 0 chr1 125056595 125056644 -72138788 + AT_rich Low_complexity Low_complexity 1 49 0 8 1539 693 234 8 0 chr1 125056762 125056890 -72138542 + B1_Mur2 SINE Alu 20 148 -1 9 1539 227 218 18 0 chr1 125056994 125057049 -72138383 + A-rich Low_complexity Low_complexity 4 59 0 9 1539 3050 153 29 16 chr1 125057364 125057963 -72137469 - RLTR13D3 LTR ERVK 0 1114 414 9 1539 234 245 20 0 chr1 125057953 125058002 -72137430 + B3A SINE B2 29 78 -120 9 1539 614 283 30 12 chr1 125057993 125058161 -72137271 + B3A SINE B2 28 198 0 9 1539 183 129 0 0 chr1 125058161 125058192 -72137240 + (CAT)n Simple_repeat Simple_repeat 2 32 0 9 1539 370 310 77 8 chr1 125058309 125058441 -72136991 + B1F SINE Alu 10 149 0 9 1539 1688 65 0 0 chr1 125058460 125058675 -72136757 + L1_Mus1 LINE L1 6353 6567 0 9 1539 23 54 0 0 chr1 125059054 125059091 -72136341 + AT_rich Low_complexity Low_complexity 1 37 0 9 1539 426 20 0 0 chr1 125059342 125059393 -72136039 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1539 307 263 164 32 chr1 125059396 125059624 -72135808 - Lx7 LINE L1 -27 5820 5574 1 1539 249 254 30 0 chr1 125059634 125059701 -72135731 - B4A SINE B4 -65 227 159 1 1539 369 248 60 26 chr1 125059702 125059818 -72135614 + L1MB5 LINE L1 5360 5479 -701 1 1539 340 332 53 53 chr1 125059865 125060091 -72135341 + L1MB5 LINE L1 5916 6141 -33 1 1539 781 336 35 32 chr1 125060092 125060375 -72135057 + B4A SINE B4 1 284 -8 1 1539 596 310 96 0 chr1 125060503 125060700 -72134732 - B3 SINE B2 0 216 1 1 1539 212 296 0 0 chr1 125060800 125060854 -72134578 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1539 342 0 0 0 chr1 125061401 125061439 -72133993 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1539 198 103 0 0 chr1 125061629 125061658 -72133774 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1539 552 291 48 37 chr1 125061862 125061910 -72133522 - B3A SINE B2 0 198 154 1 1539 477 0 0 0 chr1 125061910 125061963 -72133469 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1539 378 0 0 0 chr1 125061963 125062004 -72133428 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1539 552 291 48 37 chr1 125062004 125062143 -72133289 - B3A SINE B2 -45 153 9 1 1539 1081 213 45 119 chr1 125062526 125062874 -72132558 + RMER19C LTR ERVK 1 527 -375 1 1539 221 288 67 27 chr1 125062825 125062900 -72132532 - ID2 SINE ID -4 79 2 1 1539 7208 169 12 12 chr1 125062968 125063757 -72131675 - L1_Mm LINE L1 -131 5752 4961 1 1539 1998 144 172 3 chr1 125063757 125064141 -72131291 - RLTR44B LTR ERVK 0 449 1 1 1539 7208 169 12 12 chr1 125064141 125064547 -72130885 - L1_Mm LINE L1 -923 4960 4560 1 1539 4191 23 0 4 chr1 125064547 125065031 -72130401 + LTRIS_Mm LTR ERV1 1 482 0 1 1539 7208 169 12 12 chr1 125065031 125065206 -72130226 - L1_Mm LINE L1 -1324 4559 4382 1 1539 935 180 15 36 chr1 125065206 125065402 -72130030 - URR1B DNA MER1_type -33 192 1 1 1539 1635 198 31 6 chr1 125065428 125065778 -72129654 - RLTR15 LTR ERVK 0 359 1 1 1539 712 284 55 5 chr1 125066157 125066238 -72129194 + ID_B1 SINE B4 2 92 -132 1 1539 339 288 102 36 chr1 125066238 125066375 -72129057 + B1F2 SINE Alu 4 149 0 1 1539 467 331 28 6 chr1 125066544 125066723 -72128709 - B3A SINE B2 -15 183 1 1 1539 504 298 12 37 chr1 125067772 125067936 -72127496 + RSINE1 SINE B4 6 165 0 1 1539 217 298 100 67 chr1 125068178 125068193 -72127239 - B3A SINE B2 -100 98 6 1 1539 249 333 93 0 chr1 125068193 125068268 -72127164 - B4A SINE B4 -205 87 6 1 1539 1612 21 21 0 chr1 125068470 125068659 -72126773 - B2_Mm1t SINE B2 0 193 1 1 1539 715 296 88 51 chr1 125068750 125069218 -72126214 + RMER2 LTR ERV1 1 556 -11 1 1539 607 254 25 55 chr1 125069706 125069906 -72125526 + Lx4B LINE L1 890 1083 -5901 1 1539 5357 219 42 17 chr1 125069905 125071502 -72123930 + Lx4B LINE L1 5359 7000 0 1 1539 357 309 29 102 chr1 125071701 125071838 -72123594 + B1_Mur1 SINE Alu 2 128 -21 1 1539 298 346 45 109 chr1 125071838 125071897 -72123535 + B4 SINE B4 87 269 -23 1 1539 829 194 139 0 chr1 125072086 125072266 -72123166 + URR1A DNA MER1_type 2 206 -20 1 1539 681 288 57 33 chr1 125072414 125072780 -72122652 + L1M2 LINE L1 4339 4713 -1430 1 1539 572 246 75 14 chr1 125072908 125073122 -72122310 + L1M2 LINE L1 4727 4953 -1190 1 1539 423 351 31 108 chr1 125073138 125073333 -72122099 + B3A SINE B2 2 181 -17 1 1539 239 193 18 0 chr1 125073399 125073456 -72121976 + L1M2 LINE L1 4985 5042 -1098 1 1539 845 56 0 0 chr1 125073583 125073690 -72121742 - L1Md_F2 LINE L1 -286 6296 6190 1 1539 1225 110 10 5 chr1 125073690 125073882 -72121550 + L1_Mus1 LINE L1 6375 6567 0 1 1539 229 256 33 11 chr1 125074095 125074186 -72121246 + L1M1 LINE L1 5397 5489 -811 1 1539 302 346 0 0 chr1 125074190 125074294 -72121138 + B3A SINE B2 6 109 -89 1 1539 475 278 81 58 chr1 125074997 125075169 -72120263 + B4A SINE B4 6 181 -111 1 1539 844 73 0 61 chr1 125075237 125075369 -72120063 + RMER17A LTR ERVK 1 124 -627 1 1539 513 32 0 0 chr1 125075369 125075432 -72120000 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1539 21 57 0 0 chr1 125076305 125076340 -72119092 + AT_rich Low_complexity Low_complexity 1 35 0 1 1539 237 167 0 0 chr1 125076355 125076397 -72119035 - MT2A LTR ERVL -8 525 484 1 1539 3731 214 94 23 chr1 125076588 125077430 -72118002 + RMER19B LTR ERVK 1 902 0 1 1539 741 259 74 107 chr1 125077474 125077906 -72117526 - MT2A LTR ERVL -47 554 1 1 1539 415 310 58 17 chr1 125077916 125078090 -72117342 - B3A SINE B2 -17 181 1 1 1539 272 262 143 19 chr1 125078261 125078366 -72117066 - B4A SINE B4 -148 144 27 1 1539 493 350 65 26 chr1 125079854 125080086 -72115346 + B4A SINE B4 34 274 -18 1 1539 225 0 0 0 chr1 125080427 125080452 -72114980 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1539 212 0 36 0 chr1 125080549 125080577 -72114855 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1539 746 267 93 58 chr1 125080744 125081207 -72114225 - RMER2 LTR ERV1 -24 543 5 1 1539 335 339 92 10 chr1 125081511 125081806 -72113626 - L1_Mur3 LINE L1 -607 5273 4955 1 1539 572 281 128 13 chr1 125081869 125082096 -72113336 + Lx8 LINE L1 7187 7439 -34 1 1539 582 331 16 1 chr1 125082139 125082326 -72113106 + B3A SINE B2 12 203 -13 1 1539 23 54 0 0 chr1 125082332 125082369 -72113063 + AT_rich Low_complexity Low_complexity 1 37 0 1 1539 23 0 0 0 chr1 125082458 125082481 -72112951 + AT_rich Low_complexity Low_complexity 1 23 0 1 1539 30 59 0 0 chr1 125083625 125083676 -72111756 + AT_rich Low_complexity Low_complexity 1 51 0 1 1539 691 199 108 6 chr1 125083740 125083907 -72111525 - MTC LTR MaLR -235 186 3 1 1539 930 267 32 67 chr1 125083952 125084067 -72111365 - MTC-int LTR MaLR -896 362 249 1 1539 5611 47 4 1 chr1 125084067 125084757 -72110675 - L1Md_F3 LINE L1 -2 6582 5891 1 1539 930 267 32 67 chr1 125084757 125085014 -72110418 - MTC-int LTR MaLR -1010 248 3 1 1539 1291 211 180 17 chr1 125085014 125085376 -72110056 - MTC LTR MaLR 0 421 1 1 1539 1804 279 30 32 chr1 125085385 125086007 -72109425 + Lx9 LINE L1 6808 7428 -216 1 1539 3355 81 2 17 chr1 125086006 125086483 -72108949 - L1_Mm LINE L1 -3119 2764 2295 1 1539 6572 72 2 5 chr1 125086476 125087328 -72108104 + L1_Mm LINE L1 4736 5585 -298 1 1539 7112 78 9 7 chr1 125087328 125088313 -72107119 + L1Md_F2 LINE L1 5587 6573 -9 1 1539 6572 72 2 5 chr1 125088313 125088331 -72107101 + L1_Mm LINE L1 5586 5604 -279 1 1539 187 378 10 20 chr1 125088413 125088513 -72106919 - MER5A DNA MER1_type -50 139 41 1 1539 22 35 0 0 chr1 125088745 125088774 -72106658 + AT_rich Low_complexity Low_complexity 1 29 0 1 1539 232 293 0 0 chr1 125089322 125089380 -72106052 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1539 925 301 31 35 chr1 125089383 125089672 -72105760 - B4 SINE B4 -2 290 3 1 1539 361 347 33 13 chr1 125090537 125090689 -72104743 - MER110 LTR ERV1 -336 155 1 1 1539 207 264 53 62 chr1 125091367 125091480 -72103952 - MIR SINE MIR -88 174 63 1 1539 996 283 34 14 chr1 125091875 125092222 -72103210 + MTEb LTR MaLR 33 379 0 1 1539 1132 48 36 12 chr1 125092248 125092416 -72103016 + L1Md_F3 LINE L1 6411 6582 -2 1 1539 27 49 0 0 chr1 125093190 125093231 -72102201 + AT_rich Low_complexity Low_complexity 1 41 0 1 1539 31991 78 8 7 chr1 125093235 125098368 -72097064 + L1Md_F2 LINE L1 452 5586 -297 1 1539 7891 55 2 1 chr1 125098368 125099358 -72096074 + L1Md_F2 LINE L1 5587 6577 -5 1 1539 22 0 0 0 chr1 125099358 125099380 -72096052 + AT_rich Low_complexity Low_complexity 1 22 0 1 1539 700 335 78 11 chr1 125099388 125099657 -72095775 + B4A SINE B4 6 292 0 1 1539 761 52 32 146 chr1 125099951 125100109 -72095323 + L1Md_F3 LINE L1 6443 6582 -2 1 1539 557 142 0 8 chr1 125100188 125100316 -72095116 + (TC)n Simple_repeat Simple_repeat 2 128 0 1 1539 847 233 76 0 chr1 125100565 125100737 -72094695 - ID_B1 SINE B4 -38 186 2 1 1539 5767 84 1 6 chr1 125100857 125101645 -72093787 - L1_Mus2 LINE L1 0 6566 5783 1 1539 599 36 12 0 chr1 125101645 125101729 -72093703 - L1Md_T LINE L1 0 6582 6498 1 1539 1810 33 0 0 chr1 125101843 125102054 -72093378 - L1_Mus2 LINE L1 -769 5797 5587 1 1539 1522 114 0 0 chr1 125102055 125102275 -72093157 - L1_Mm LINE L1 -767 5116 4897 1 1539 15646 129 9 0 chr1 125102260 125104773 -72090659 - L1_Mm LINE L1 -1187 4696 2163 1 1539 1634 281 89 43 chr1 125105092 125105679 -72089753 + Lx6 LINE L1 6814 7427 -33 1 1539 630 0 0 0 chr1 125105730 125105800 -72089632 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1539 576 291 67 78 chr1 125106747 125107105 -72088327 + ORR1E LTR MaLR 3 356 -3 1 1539 388 326 78 17 chr1 125107146 125107377 -72088055 + L1MD LINE L1 2362 2606 -3540 1 1539 180 0 0 0 chr1 125107479 125107499 -72087933 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1539 595 338 55 26 chr1 125107614 125107887 -72087545 + B4A SINE B4 4 284 -8 1 1539 340 283 106 33 chr1 125108024 125108298 -72087134 + L1M3 LINE L1 4521 4814 -1326 1 1539 1854 149 9 12 chr1 125108372 125108704 -72086728 - Lx LINE L1 0 6654 6324 1 1539 8913 174 130 19 chr1 125108708 125110845 -72084587 - L1_Mm LINE L1 -225 5658 3249 1 1539 609 72 0 0 chr1 125111133 125111216 -72084216 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1539 261 0 0 0 chr1 125111283 125111312 -72084120 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 1 1539 1383 155 4 97 chr1 125111416 125111694 -72083738 - L1_Mus2 LINE L1 -2 6564 6313 1 1539 7888 116 9 1 chr1 125111699 125112967 -72082465 - L1_Mm LINE L1 -798 5085 3807 1 1539 390 123 0 0 chr1 125112967 125113040 -72082392 - L1Md_F2 LINE L1 -3 6579 6507 1 1539 624 200 14 0 chr1 125113053 125113193 -72082239 + Lx2B LINE L1 5182 5323 -563 1 1539 7309 151 25 24 chr1 125113201 125114603 -72080829 + Lx2B LINE L1 5591 6994 -6 1 1539 33 56 0 0 chr1 125114605 125114659 -72080773 + AT_rich Low_complexity Low_complexity 1 54 0 1 1539 292 323 10 41 chr1 125114752 125114849 -72080583 + RSINE1 SINE B4 3 96 -69 1 1539 506 333 20 0 chr1 125115065 125115212 -72080220 + B3A SINE B2 1 150 -48 1 1539 402 79 0 0 chr1 125115221 125115284 -72080148 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1539 289 329 53 0 chr1 125115663 125115739 -72079693 + RSINE1 SINE B4 29 108 -57 1 1539 575 314 114 40 chr1 125115762 125116342 -72079090 + L1MD LINE L1 2821 3443 -2703 2 1539 255 265 29 29 chr1 125116492 125116562 -72078870 - ERVL-E-int LTR ERVL -1407 4260 4191 2 1539 250 282 0 37 chr1 125116580 125116661 -72078771 - ERVL-E-int LTR ERVL -1515 4246 4169 2 1539 409 226 71 0 chr1 125116782 125116866 -72078566 - ORR1E LTR MaLR -2 377 288 2 1539 506 327 17 23 chr1 125116880 125117052 -72078380 + ORR1D2 LTR MaLR 6 176 -194 2 1539 648 274 33 45 chr1 125117443 125117663 -72077769 + ORR1D2 LTR MaLR 109 378 0 2 1539 675 231 13 6 chr1 125117663 125117818 -72077614 - ORR1E LTR MaLR -94 285 97 2 1539 426 350 89 33 chr1 125117826 125118465 -72076967 - ERVL-E-int LTR ERVL -2012 3655 2981 2 1539 820 310 12 4 chr1 125118468 125118727 -72076705 + Lx8 LINE L1 6476 6736 -737 2 1539 522 254 21 48 chr1 125118898 125119043 -72076389 + MTD LTR MaLR 61 201 -218 2 1539 486 0 0 0 chr1 125119179 125119233 -72076199 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 1539 1105 293 110 8 chr1 125119250 125119790 -72075642 + Lx7 LINE L1 6574 7184 -289 2 1539 279 31 76 30 chr1 125119866 125119932 -72075500 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 2 1539 1093 207 14 18 chr1 125120035 125120252 -72075180 + MTD LTR MaLR 196 411 -8 2 1539 198 0 0 0 chr1 125120262 125120284 -72075148 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2 1539 2587 249 82 34 chr1 125120480 125121510 -72073922 - RMER1A Other Other -5 1025 71 2 1539 2771 287 53 7 chr1 125121511 125122354 -72073078 + RCHARR1 DNA MER1_type 5 886 -88 2 1539 299 365 93 0 chr1 125122375 125122482 -72072950 - RSINE1 SINE B4 -47 118 2 2 1539 826 302 63 48 chr1 125122532 125122848 -72072584 - MTE2a LTR MaLR -56 323 3 2 1539 388 336 8 0 chr1 125123529 125123660 -72071772 - B4A SINE B4 -4 288 157 2 1539 270 317 0 145 chr1 125123715 125123881 -72071551 - B1F1 SINE Alu -7 142 1 2 1539 599 330 42 10 chr1 125123881 125123961 -72071471 - ID SINE ID -138 86 1 2 1539 264 167 0 0 chr1 125124027 125124075 -72071357 + CT-rich Low_complexity Low_complexity 1 48 0 2 1539 188 322 33 44 chr1 125124204 125124295 -72071137 - MIR SINE MIR -120 142 53 2 1539 2215 149 39 14 chr1 125124807 125125222 -72070210 + Lx2 LINE L1 6573 6997 0 2 1539 615 62 0 0 chr1 125125521 125125601 -72069831 + (TAA)n Simple_repeat Simple_repeat 3 82 0 2 1539 259 281 159 33 chr1 125125804 125125955 -72069477 + B4A SINE B4 123 292 0 2 1539 351 44 0 0 chr1 125126498 125126543 -72068889 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1539 543 132 0 0 chr1 125126699 125126790 -72068642 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 1539 256 214 38 28 chr1 125126790 125126896 -72068536 + (TG)n Simple_repeat Simple_repeat 1 107 0 2 1539 1172 289 18 101 chr1 125126969 125127415 -72068017 + RMER19C LTR ERVK 52 460 -151 2 1539 790 270 81 19 chr1 125127791 125128052 -72067380 - MTEa LTR MaLR 0 379 103 2 1539 392 337 28 62 chr1 125128075 125128210 -72067222 + MTE2b LTR MaLR 21 151 -208 2 1539 1507 222 69 3 chr1 125128210 125128557 -72066875 + ORR1D1 LTR MaLR 1 370 -4 2 1539 392 337 28 62 chr1 125128557 125128598 -72066834 + MTE2b LTR MaLR 152 191 -168 2 1539 434 132 13 0 chr1 125128598 125128674 -72066758 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1539 580 215 66 84 chr1 125128681 125128882 -72066550 + MTE2b LTR MaLR 149 368 -11 2 1539 231 352 22 11 chr1 125128885 125128974 -72066458 - MTEa LTR MaLR -271 108 19 2 1539 874 74 0 0 chr1 125129518 125129640 -72065792 - L1_Mus1 LINE L1 -9 6558 6437 2 1539 2537 75 0 0 chr1 125129640 125129971 -72065461 + L1_Mus1 LINE L1 6091 6421 -146 2 1539 333 0 0 0 chr1 125130803 125130840 -72064592 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1539 569 373 0 25 chr1 125130858 125131015 -72064417 + RSINE1 SINE B4 13 165 0 2 1539 288 281 109 0 chr1 125131059 125131187 -72064245 - MER2 DNA MER2_type -135 210 69 2 1539 751 309 98 53 chr1 125131220 125131435 -72063997 + RMER5 LTR ERV1 19 240 -294 2 1539 1104 148 38 0 chr1 125131435 125131644 -72063788 + L1_Mus3 LINE L1 6417 6633 -5 2 1539 751 309 98 53 chr1 125131644 125131827 -72063605 + RMER5 LTR ERV1 241 435 -99 2 1539 1143 279 74 25 chr1 125131941 125132305 -72063127 + MTD LTR MaLR 24 405 -14 2 1539 22 0 0 0 chr1 125132683 125132705 -72062727 + AT_rich Low_complexity Low_complexity 1 22 0 2 1539 763 278 65 33 chr1 125132985 125133260 -72062172 + B4A SINE B4 8 291 -1 2 1539 416 355 22 0 chr1 125133615 125133753 -72061679 + RSINE1 SINE B4 11 151 -14 2 1539 414 0 0 0 chr1 125133765 125133811 -72061621 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1539 1123 137 22 6 chr1 125133847 125134030 -72061402 + B2_Mm2 SINE B2 3 188 -7 2 1539 1986 250 77 59 chr1 125134109 125134841 -72060591 + RLTR40 LTR ERVK 18 762 -55 2 1539 459 246 57 16 chr1 125134900 125135024 -72060408 - RLTR40 LTR ERVK -474 343 215 2 1539 612 361 26 0 chr1 125135358 125135549 -72059883 + B4A SINE B4 97 292 0 2 1539 203 122 24 24 chr1 125135604 125135646 -72059786 + (TTG)n Simple_repeat Simple_repeat 3 44 0 2 1539 285 306 53 53 chr1 125136038 125136190 -72059242 - MER34A1 LTR ERV1 -5 582 431 2 1539 255 250 13 38 chr1 125136332 125136411 -72059021 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 2 1539 970 53 15 0 chr1 125136434 125136567 -72058865 + (GGGAGA)n Simple_repeat Simple_repeat 3 137 0 2 1539 263 355 37 0 chr1 125136855 125136962 -72058470 + PB1D10 SINE Alu 7 117 0 2 1539 2801 195 35 23 chr1 125137080 125137651 -72057781 + RLTR20A2 LTR ERVK 1 578 0 2 1539 678 58 0 0 chr1 125137823 125137910 -72057522 + (GAA)n Simple_repeat Simple_repeat 2 88 0 2 1539 269 246 92 40 chr1 125137925 125138001 -72057431 - B1F1 SINE Alu -69 80 1 2 1539 208 196 0 35 chr1 125138771 125138829 -72056603 + T-rich Low_complexity Low_complexity 2 57 0 2 1539 500 342 0 7 chr1 125139072 125139219 -72056213 + B1F SINE Alu 3 148 -1 2 1539 423 231 177 24 chr1 125139229 125139353 -72056079 + B1_Mur1 SINE Alu 7 149 0 2 1539 342 347 106 41 chr1 125139394 125139517 -72055915 + B4 SINE B4 139 269 -23 2 1539 573 90 0 0 chr1 125139517 125139606 -72055826 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1539 404 390 108 26 chr1 125139737 125140153 -72055279 - LTR16C LTR ERVL -25 464 15 2 1539 351 0 0 0 chr1 125140482 125140521 -72054911 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1539 572 292 0 8 chr1 125140651 125140782 -72054650 + RSINE1 SINE B4 3 132 -33 2 1539 1159 27 14 0 chr1 125140782 125140929 -72054503 + (GA)n Simple_repeat Simple_repeat 2 150 0 2 1539 2045 144 6 0 chr1 125140930 125141249 -72054183 + ORR1A4 LTR MaLR 1 321 -8 2 1539 397 284 43 50 chr1 125142249 125142390 -72053042 - RSINE1 SINE B4 -2 163 24 2 1539 32496 79 4 5 chr1 125142576 125147164 -72048268 - L1Md_F2 LINE L1 0 6582 1978 2 1539 396 0 0 0 chr1 125147164 125147208 -72048224 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1539 32496 79 3 5 chr1 125147208 125147233 -72048199 - L1Md_F2 LINE L1 -3906 1977 1970 2 1539 281 26 26 0 chr1 125147233 125147271 -72048161 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1539 32496 100 20 14 chr1 125147271 125148792 -72046640 - L1Md_F2 LINE L1 -3914 1969 436 2 1539 822 73 0 0 chr1 125149622 125149732 -72045700 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 2 1539 301 318 45 27 chr1 125149847 125149957 -72045475 + L1MCa LINE L1 480 591 -5917 2 1539 722 270 17 41 chr1 125150284 125150574 -72044858 + RCHARR1 DNA MER1_type 655 937 -37 2 1539 460 311 68 0 chr1 125150575 125150723 -72044709 + RSINE1 SINE B4 3 160 -5 2 1539 191 146 0 24 chr1 125151670 125151712 -72043720 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 1539 26 0 0 0 chr1 125151712 125151738 -72043694 + AT_rich Low_complexity Low_complexity 1 26 0 2 1539 213 290 67 75 chr1 125151880 125152014 -72043418 - MIRb SINE MIR -70 198 66 2 1539 442 317 54 22 chr1 125152463 125152647 -72042785 + B4A SINE B4 41 230 -62 2 1539 628 312 66 92 chr1 125153214 125153683 -72041749 + RMER5 LTR ERV1 74 530 -4 2 1539 1377 266 57 14 chr1 125154068 125154434 -72040998 + MTD LTR MaLR 38 419 0 2 1539 726 127 19 25 chr1 125154731 125154892 -72040540 + GA-rich Low_complexity Low_complexity 2 161 0 2 1539 264 77 0 0 chr1 125154991 125155030 -72040402 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1539 531 0 0 0 chr1 125155289 125155348 -72040084 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1539 456 281 93 31 chr1 125155541 125155676 -72039756 + Lx5 LINE L1 854 992 -2923 2 1539 4214 132 37 11 chr1 125155676 125156408 -72039024 + RMER17A LTR ERVK 1 751 0 2 1539 2066 186 21 80 chr1 125156408 125156989 -72038443 + Lx5 LINE L1 993 1608 -4269 2 1539 354 23 0 0 chr1 125156989 125157032 -72038400 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1539 504 0 0 0 chr1 125157032 125157087 -72038345 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1539 2066 175 8 84 chr1 125157087 125157234 -72038198 + Lx5 LINE L1 1609 1754 -4123 2 1539 218 256 0 0 chr1 125157234 125157277 -72038155 + G-rich Low_complexity Low_complexity 5 47 0 2 1539 1980 191 187 154 chr1 125157280 125157853 -72037579 + Lx5 LINE L1 3218 3937 -1936 2 1539 247 247 29 106 chr1 125157830 125157934 -72037498 + RLTR25B LTR ERVK 426 521 -507 2 1539 682 129 0 0 chr1 125157853 125157954 -72037478 + B1_Mus2 SINE Alu 45 145 -2 2 1539 231 36 0 0 chr1 125157958 125157986 -72037446 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2 1539 1980 191 187 154 chr1 125157986 125158413 -72037019 + Lx5 LINE L1 3942 4360 -1517 2 1539 7589 51 2 2 chr1 125158414 125159576 -72035856 - L1Md_F2 LINE L1 -12 6570 5410 2 1539 5456 200 22 4 chr1 125159576 125159835 -72035597 + Lx5 LINE L1 4369 4627 -1250 2 1539 194 0 39 0 chr1 125159835 125159861 -72035571 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1539 5456 200 22 4 chr1 125159861 125160805 -72034627 + Lx5 LINE L1 4628 5592 -285 2 1539 714 280 13 137 chr1 125160806 125161178 -72034254 + RLTR11B LTR ERVK 1 326 -127 2 1539 709 194 12 48 chr1 125161173 125161341 -72034091 + RLTR11B LTR ERVK 277 438 -15 2 1539 2953 199 38 31 chr1 125161367 125161555 -72033877 + Lx5 LINE L1 5605 5789 -1261 2 1539 7633 47 12 0 chr1 125161555 125162501 -72032931 + L1Md_F2 LINE L1 5626 6582 0 2 1539 2953 199 38 31 chr1 125162501 125163019 -72032413 + Lx5 LINE L1 5790 6316 -734 2 1539 1892 171 109 64 chr1 125163019 125163272 -72032160 - RLTR21 LTR ERVK 0 1572 1304 2 1539 372 103 0 0 chr1 125163272 125163330 -72032102 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1539 1892 171 109 64 chr1 125163330 125163545 -72031887 - RLTR21 LTR ERVK -269 1303 1084 2 1539 510 170 0 0 chr1 125163576 125163670 -72031762 + (CATA)n Simple_repeat Simple_repeat 3 96 0 2 1539 6980 146 47 13 chr1 125163674 125164887 -72030545 - RLTR21 LTR ERVK -318 1254 1 2 1539 2290 217 2 2 chr1 125164887 125165349 -72030083 + Lx5 LINE L1 6327 6788 -262 2 1539 4351 97 99 9 chr1 125165445 125166135 -72029297 - RMER17A2 LTR ERVK -154 752 1 2 1539 279 79 0 0 chr1 125166250 125166288 -72029144 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1539 278 273 78 0 chr1 125167068 125167145 -72028287 - B3A SINE B2 -114 84 2 2 1539 496 330 26 37 chr1 125167147 125167336 -72028096 - B3A SINE B2 -3 195 9 3 1539 1431 83 5 5 chr1 125168265 125168458 -72026974 + B2_Mm2 SINE B2 1 193 -2 3 1539 3074 50 0 3 chr1 125168765 125169146 -72026286 - L1Md_F3 LINE L1 -3 6581 6202 3 1539 500 239 35 0 chr1 125169261 125169374 -72026058 - RSINE1 SINE B4 -37 128 12 3 1539 328 242 160 32 chr1 125169722 125169910 -72025522 + Lx7 LINE L1 7485 7696 0 3 1539 427 291 51 63 chr1 125170421 125170579 -72024853 + B4 SINE B4 101 256 -36 3 1539 6240 190 30 8 chr1 125170865 125173168 -72022264 + Lx5 LINE L1 4687 7050 0 3 1540 652 284 27 55 chr1 125173771 125173991 -72021441 + ID_B1 SINE B4 9 222 -2 3 1540 248 365 12 6 chr1 125174001 125174169 -72021263 + GA-rich Low_complexity Low_complexity 2 170 0 3 1540 225 198 24 12 chr1 125174185 125174267 -72021165 + GA-rich Low_complexity Low_complexity 1 83 0 3 1540 1577 185 91 47 chr1 125174421 125174845 -72020587 + RMER17C LTR ERVK 1 437 -469 3 1540 799 295 57 44 chr1 125175270 125175568 -72019864 + RCHARR1 DNA MER1_type 182 483 -491 3 1540 13909 136 9 12 chr1 125175574 125178623 -72016809 + L1VL4 LINE L1 512 3463 -354 3 1540 2426 117 32 0 chr1 125178623 125178999 -72016433 + L1_Mus3 LINE L1 6246 6633 -5 3 1540 286 354 102 0 chr1 125179005 125179220 -72016212 - L2a LINE L2 -142 3284 3048 3 1540 417 329 68 0 chr1 125179243 125179404 -72016028 + B3A SINE B2 1 172 -26 3 1540 1014 251 40 13 chr1 125179415 125179787 -72015645 + RCHARR1 DNA MER1_type 505 886 -88 3 1540 1244 217 105 138 chr1 125179790 125180218 -72015214 - MTD LTR MaLR -5 414 1 3 1540 1104 191 19 11 chr1 125180375 125180628 -72014804 + RMER6C LTR ERVK 1 472 -218 3 1540 523 0 30 0 chr1 125180628 125180695 -72014737 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1540 1104 229 33 65 chr1 125180695 125180914 -72014518 + RMER6C LTR ERVK 473 688 -2 3 1540 230 282 12 37 chr1 125181319 125181400 -72014032 + MTEa LTR MaLR 278 356 -23 3 1540 592 274 66 33 chr1 125181773 125181804 -72013628 - B3A SINE B2 -5 193 164 3 1540 288 53 0 0 chr1 125181804 125181842 -72013590 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1540 592 274 66 33 chr1 125181842 125181991 -72013441 - B3A SINE B2 -35 163 7 3 1540 23 0 0 0 chr1 125183269 125183292 -72012140 + AT_rich Low_complexity Low_complexity 1 23 0 3 1540 265 375 56 39 chr1 125183600 125183848 -72011584 - MTEb LTR MaLR -8 371 117 3 1540 414 0 0 0 chr1 125183848 125183894 -72011538 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1540 258 384 99 58 chr1 125183894 125183988 -72011444 - MTEb LTR MaLR -243 116 1 3 1540 180 0 0 0 chr1 125184306 125184326 -72011106 + (ATG)n Simple_repeat Simple_repeat 3 22 0 3 1540 597 333 0 0 chr1 125184667 125184823 -72010609 + B3A SINE B2 1 156 -42 3 1540 645 25 0 0 chr1 125184834 125184913 -72010519 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1540 375 60 0 0 chr1 125184922 125184972 -72010460 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1540 21 0 0 0 chr1 125185044 125185065 -72010367 + AT_rich Low_complexity Low_complexity 1 21 0 3 1540 21 0 0 0 chr1 125185527 125185548 -72009884 + AT_rich Low_complexity Low_complexity 1 21 0 3 1540 21 0 0 0 chr1 125185928 125185949 -72009483 + AT_rich Low_complexity Low_complexity 1 21 0 3 1540 318 351 0 18 chr1 125185953 125186066 -72009366 - B3 SINE B2 -4 212 102 3 1540 537 206 18 0 chr1 125187495 125187646 -72007786 + (TA)n Simple_repeat Simple_repeat 2 155 0 3 1540 3890 123 53 53 chr1 125187646 125188453 -72006979 - RMER17D2 LTR ERVK -2 807 1 3 1540 537 206 18 0 chr1 125188453 125188471 -72006961 + (TA)n Simple_repeat Simple_repeat 2 19 0 3 1540 219 268 35 18 chr1 125188704 125188761 -72006671 - ID_B1 SINE B4 -74 150 93 3 1540 12372 117 44 11 chr1 125188921 125191186 -72004246 + L1_Mur1 LINE L1 899 3238 -2648 3 1540 1050 93 0 0 chr1 125191178 125191340 -72004092 + L1_Mur1 LINE L1 3435 3596 -2290 3 1540 1179 103 0 0 chr1 125191326 125191510 -72003922 + L1_Mur1 LINE L1 4125 4308 -1578 3 1540 330 328 40 18 chr1 125192083 125192356 -72003076 + L1M2 LINE L1 5501 5779 -512 3 1540 429 20 0 0 chr1 125192357 125192407 -72003025 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1540 369 0 0 0 chr1 125193363 125193404 -72002028 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1540 1282 275 31 42 chr1 125193862 125194219 -72001213 + MTE2b LTR MaLR 1 353 -26 3 1540 673 239 105 32 chr1 125194392 125194582 -72000850 - B3 SINE B2 -11 205 2 3 1540 318 67 0 0 chr1 125194583 125194628 -72000804 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1540 263 335 40 96 chr1 125195106 125195304 -72000128 - B4A SINE B4 -98 194 8 3 1540 1216 31 0 30 chr1 125195645 125195809 -71999623 - L1Md_F2 LINE L1 0 6582 6424 3 1540 202 266 15 30 chr1 125195964 125196030 -71999402 + CT-rich Low_complexity Low_complexity 2 66 0 3 1540 3049 44 0 0 chr1 125196872 125197237 -71998195 - L1Md_T LINE L1 -1 6581 6217 3 1540 2274 29 0 0 chr1 125197237 125197512 -71997920 + L1Md_T LINE L1 5943 6217 -365 3 1540 1719 38 0 0 chr1 125197605 125197816 -71997616 + L1_Mus1 LINE L1 6163 6373 -194 3 1540 242 281 144 10 chr1 125198193 125198297 -71997135 - Charlie1 DNA MER1_type -1245 1536 1419 3 1540 471 250 24 8 chr1 125198723 125198848 -71996584 + Lx8 LINE L1 7109 7235 -238 3 1540 2597 112 15 0 chr1 125199021 125199421 -71996011 + L1Md_F LINE L1 80 485 -6034 3 1540 1127 46 0 0 chr1 125199420 125199573 -71995859 + L1Md_F LINE L1 773 925 -5594 3 1540 1424 92 0 37 chr1 125199887 125200102 -71995330 + L1_Mus1 LINE L1 6361 6567 0 3 1540 351 278 0 0 chr1 125200220 125200292 -71995140 - B1F2 SINE Alu -21 128 57 3 1540 223 0 0 161 chr1 125200297 125200496 -71994936 + (CAGAC)n Simple_repeat Simple_repeat 5 171 0 3 1540 334 0 0 161 chr1 125200496 125200670 -71994762 + (CAGTC)n Simple_repeat Simple_repeat 5 150 0 3 1540 469 291 10 10 chr1 125200723 125200827 -71994605 - RSINE1 SINE B4 -56 109 6 3 1540 22 35 0 0 chr1 125200832 125200861 -71994571 + AT_rich Low_complexity Low_complexity 1 29 0 3 1540 488 269 243 21 chr1 125201119 125201188 -71994244 + B4A SINE B4 1 68 -224 3 1540 324 0 0 0 chr1 125201188 125201224 -71994208 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1540 488 269 243 21 chr1 125201224 125201393 -71994039 + B4A SINE B4 69 292 0 3 1540 216 163 0 0 chr1 125201395 125201438 -71993994 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1540 507 73 0 0 chr1 125201459 125201527 -71993905 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1540 552 374 7 65 chr1 125201864 125202173 -71993259 + B4A SINE B4 2 292 0 3 1540 417 39 0 0 chr1 125202672 125202723 -71992709 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1540 427 364 61 44 chr1 125202811 125203104 -71992328 - MT2A LTR ERVL -101 432 135 3 1540 403 367 20 13 chr1 125203559 125203711 -71991721 + RSINE1 SINE B4 7 159 -6 3 1540 509 287 33 0 chr1 125204125 125204275 -71991157 + L1M4 LINE L1 4030 4184 -1962 3 1540 219 298 0 0 chr1 125204362 125204409 -71991023 - B1_Mur2 SINE Alu -52 97 51 3 1540 452 226 0 47 chr1 125204577 125204684 -71990748 + PB1D10 SINE Alu 1 102 -15 3 1540 315 296 92 21 chr1 125204826 125205161 -71990271 + L1M4 LINE L1 4385 4743 -1403 3 1540 517 306 162 26 chr1 125205682 125206086 -71989346 + L1M4 LINE L1 5255 5710 -474 3 1540 621 27 0 0 chr1 125206131 125206206 -71989226 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1540 235 242 127 16 chr1 125206214 125206277 -71989155 - ID2 SINE ID -11 72 3 3 1540 248 310 39 20 chr1 125206369 125206471 -71988961 - RMER15 LTR ERVL -14 561 458 3 1540 207 0 0 0 chr1 125206730 125206753 -71988679 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1540 555 16 0 0 chr1 125206753 125206816 -71988616 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1540 378 0 0 0 chr1 125207108 125207150 -71988282 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1540 509 316 311 5 chr1 125208264 125208479 -71986953 + B4 SINE B4 12 292 0 3 1540 460 315 31 0 chr1 125208895 125209025 -71986407 - RSINE1 SINE B4 -29 136 3 3 1540 1870 248 87 14 chr1 125209347 125209866 -71985566 + RLTR31B_Mm LTR ERVK 1 557 0 3 1540 1126 190 42 57 chr1 125210060 125210395 -71985037 + RMER17C LTR ERVK 81 410 0 3 1540 1446 161 202 3 chr1 125210395 125210707 -71984725 + ORR1A4-int LTR MaLR 28 401 -1562 3 1540 7140 60 2 10 chr1 125210707 125211668 -71983764 - L1_Mus2 LINE L1 -6 6560 5608 3 1540 7590 37 0 3 chr1 125211668 125212551 -71982881 - RLTR13B3 LTR ERVK 0 929 49 3 1540 2593 38 0 0 chr1 125212551 125212865 -71982567 - L1Md_A LINE L1 -1 6581 6268 3 1540 7590 37 0 3 chr1 125212865 125212913 -71982519 - RLTR13B3 LTR ERVK -881 48 1 3 1540 1313 93 0 0 chr1 125212913 125213096 -71982336 - L1_Mus2 LINE L1 -270 5613 5431 3 1540 4352 196 42 73 chr1 125213096 125214123 -71981309 + ORR1A4-int LTR MaLR 382 1376 -587 3 1540 956 164 7 196 chr1 125214118 125214521 -71980911 + RMER17C LTR ERVK 84 410 0 3 1540 2227 163 54 47 chr1 125214521 125215198 -71980234 + ORR1A4-int LTR MaLR 1001 1772 -191 3 1540 1413 184 19 11 chr1 125215198 125215467 -71979965 + ORR1A4 LTR MaLR 1 271 -58 3 1540 576 0 0 0 chr1 125215467 125215531 -71979901 + (T)n Simple_repeat Simple_repeat 1 64 0 3 1540 4550 10 0 0 chr1 125215539 125216042 -71979390 - L1Md_T LINE L1 0 6582 6080 3 1540 433 119 0 0 chr1 125216042 125216101 -71979331 + ORR1A4 LTR MaLR 271 329 0 3 1540 3534 48 0 0 chr1 125216446 125216880 -71978552 - L1Md_F2 LINE L1 -1 6581 6148 3 1540 21 0 0 0 chr1 125216973 125216994 -71978438 + AT_rich Low_complexity Low_complexity 1 21 0 3 1540 676 273 0 0 chr1 125216995 125217138 -71978294 - B1_Mur1 SINE Alu -5 144 2 3 1540 234 150 0 0 chr1 125217163 125217203 -71978229 + (ATG)n Simple_repeat Simple_repeat 2 41 0 3 1540 679 252 0 0 chr1 125217206 125217337 -71978095 - B1_Mus1 SINE Alu -7 141 11 3 1540 514 264 86 27 chr1 125217348 125217535 -71977897 - B3A SINE B2 0 198 1 3 1540 342 0 0 0 chr1 125217652 125217690 -71977742 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1540 277 352 0 0 chr1 125218318 125218426 -71977006 + PB1D10 SINE Alu 3 110 -7 3 1540 274 289 14 22 chr1 125218659 125218797 -71976635 - L1M2 LINE L1 -1452 4691 4555 3 1540 287 218 62 112 chr1 125218829 125218989 -71976443 + L1MA6 LINE L1 5751 5902 -398 3 1540 293 307 101 48 chr1 125219110 125219319 -71976113 + L1MA6 LINE L1 6050 6269 -31 3 1540 2716 78 11 8 chr1 125219816 125220193 -71975239 - L1_Mus2 LINE L1 -2 6564 6187 3 1540 254 94 0 54 chr1 125220212 125220268 -71975164 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1540 23 68 0 0 chr1 125221064 125221108 -71974324 + AT_rich Low_complexity Low_complexity 1 44 0 3 1540 272 219 137 0 chr1 125221137 125221210 -71974222 + RSINE1 SINE B4 45 127 -38 3 1540 343 342 139 70 chr1 125223810 125224068 -71971364 - B4 SINE B4 -4 288 13 3 1540 521 344 93 16 chr1 125224453 125224710 -71970722 - B4A SINE B4 -14 278 2 4 1540 401 271 31 0 chr1 125225203 125225299 -71970133 + B1_Mur1 SINE Alu 43 141 -8 4 1540 217 122 0 47 chr1 125225318 125225361 -71970071 + (CATAA)n Simple_repeat Simple_repeat 4 44 0 4 1540 612 50 0 0 chr1 125225950 125226030 -71969402 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1540 207 0 0 0 chr1 125226030 125226052 -71969380 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1540 313 335 108 30 chr1 125226053 125226219 -71969213 - B3 SINE B2 -32 184 6 4 1540 2632 47 5 112 chr1 125226319 125226749 -71968683 + RLTR10 LTR ERVK 1 384 -6 4 1540 3734 19 0 0 chr1 125226982 125227413 -71968019 - L1Md_F3 LINE L1 -567 6017 5587 4 1540 4187 30 47 0 chr1 125227422 125227929 -71967503 + L1Md_F3 LINE L1 6054 6584 0 4 1540 958 241 121 36 chr1 125227929 125228253 -71967179 + ORR1E LTR MaLR 12 377 -2 4 1540 21 36 0 0 chr1 125229849 125229877 -71965555 + AT_rich Low_complexity Low_complexity 1 28 0 4 1540 21 0 0 0 chr1 125230149 125230170 -71965262 + AT_rich Low_complexity Low_complexity 1 21 0 4 1540 926 141 79 63 chr1 125231373 125231562 -71963870 + ORR1C2 LTR MaLR 5 196 -188 4 1540 902 244 69 18 chr1 125231567 125231843 -71963589 + RMER5 LTR ERV1 235 524 -10 4 1540 531 274 88 91 chr1 125231854 125232151 -71963281 - RMER5 LTR ERV1 -237 297 2 4 1540 354 258 30 52 chr1 125232221 125232356 -71963076 + MER67D LTR ERV1 26 157 -357 4 1540 417 389 143 24 chr1 125232553 125233064 -71962368 + MTE-int LTR MaLR 673 1244 -336 4 1540 258 351 0 0 chr1 125233079 125233173 -71962259 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1540 767 305 15 50 chr1 125233765 125234024 -71961408 - B4 SINE B4 -1 291 42 4 1540 659 269 19 25 chr1 125234256 125234416 -71961016 + RSINE1 SINE B4 7 165 0 4 1540 186 348 22 11 chr1 125234609 125234699 -71960733 + MIR SINE MIR 40 130 -78 4 1540 659 112 58 12 chr1 125235188 125235359 -71960073 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1540 435 19 0 0 chr1 125235359 125235411 -71960021 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 4 1540 479 321 103 47 chr1 125235435 125235667 -71959765 - B4 SINE B4 0 292 48 4 1540 1038 110 11 6 chr1 125236522 125236696 -71958736 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 4 1540 819 170 11 11 chr1 125236700 125236878 -71958554 + CT-rich Low_complexity Low_complexity 2 179 0 4 1540 387 0 0 0 chr1 125237238 125237281 -71958151 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1540 282 29 0 0 chr1 125237281 125237315 -71958117 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1540 182 62 31 0 chr1 125237316 125237348 -71958084 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 4 1540 270 0 0 0 chr1 125237854 125237884 -71957548 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1540 337 324 47 57 chr1 125238862 125239055 -71956377 + B4 SINE B4 12 202 -90 4 1540 598 312 0 0 chr1 125239031 125239172 -71956260 + B4 SINE B4 146 286 -6 4 1540 210 305 8 33 chr1 125239387 125239509 -71955923 + GA-rich Low_complexity Low_complexity 2 120 0 4 1540 237 151 0 0 chr1 125239888 125239941 -71955491 + A-rich Low_complexity Low_complexity 1 53 0 4 1540 186 43 0 0 chr1 125240005 125240028 -71955404 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1540 585 248 16 8 chr1 125240248 125240374 -71955058 - RSINE1 SINE B4 -34 131 5 4 1540 21 0 0 0 chr1 125240382 125240403 -71955029 + AT_rich Low_complexity Low_complexity 1 21 0 4 1540 3201 92 8 25 chr1 125241454 125241936 -71953496 - Lx3_Mus LINE L1 0 7009 6536 4 1540 6068 108 30 13 chr1 125241936 125243171 -71952261 + Lx3_Mus LINE L1 5276 6525 -484 4 1540 462 18 0 0 chr1 125243380 125243435 -71951997 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1540 255 350 85 70 chr1 125244093 125244293 -71951139 - B4A SINE B4 -88 204 2 4 1540 334 314 73 93 chr1 125244534 125244685 -71950747 + RSINE1 SINE B4 6 153 -12 4 1540 582 98 18 18 chr1 125244738 125244852 -71950580 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 4 1540 591 302 0 44 chr1 125245004 125245184 -71950248 - B3A SINE B2 0 198 27 4 1540 23 0 0 0 chr1 125245184 125245207 -71950225 + AT_rich Low_complexity Low_complexity 1 23 0 4 1540 469 97 0 0 chr1 125245236 125245298 -71950134 + L1_Mus2 LINE L1 6368 6429 -137 4 1540 23 0 0 0 chr1 125245394 125245417 -71950015 + AT_rich Low_complexity Low_complexity 1 23 0 4 1540 203 289 0 0 chr1 125245658 125245703 -71949729 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 4 1540 229 26 26 26 chr1 125245756 125245795 -71949637 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1540 1051 70 14 14 chr1 125245796 125245941 -71949491 - B1_Mur4 SINE Alu -1 149 5 4 1540 23 0 0 0 chr1 125246014 125246037 -71949395 + AT_rich Low_complexity Low_complexity 1 23 0 4 1540 355 336 18 9 chr1 125246059 125246170 -71949262 + MLT1B LTR MaLR 212 323 -67 4 1540 259 258 43 43 chr1 125246278 125246347 -71949085 - ID4_ SINE ID -11 72 4 4 1540 406 214 27 7 chr1 125246360 125246506 -71948926 + (TA)n Simple_repeat Simple_repeat 2 150 0 4 1540 2915 123 42 9 chr1 125246609 125247067 -71948365 + Lx3B LINE L1 6218 6690 -283 4 1540 764 134 51 51 chr1 125247058 125247215 -71948217 + Lx3B LINE L1 6813 6969 -4 4 1540 405 0 0 0 chr1 125247217 125247262 -71948170 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1540 304 288 62 4 chr1 125248220 125248324 -71947108 + PB1D7 SINE Alu 14 120 0 4 1540 491 221 0 6 chr1 125248443 125248602 -71946830 + (TG)n Simple_repeat Simple_repeat 1 158 0 4 1540 291 164 0 0 chr1 125248636 125248697 -71946735 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1540 422 284 120 7 chr1 125248746 125248888 -71946544 - B4A SINE B4 0 292 135 4 1540 317 62 21 0 chr1 125249139 125249187 -71946245 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1540 506 301 183 62 chr1 125249389 125249630 -71945802 + B4 SINE B4 1 270 -22 4 1540 239 290 0 14 chr1 125250990 125251060 -71944372 + ID2 SINE ID 5 73 -10 4 1540 232 228 105 0 chr1 125251602 125251659 -71943773 + RMER10A LTR ERVL 318 380 -62 4 1540 219 69 0 0 chr1 125251662 125251691 -71943741 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1540 225 267 0 135 chr1 125251931 125252035 -71943397 + RMER17D LTR ERVK 32 121 -688 4 1540 785 274 17 59 chr1 125251946 125252183 -71943249 + RMER10A LTR ERVL 1 227 -215 4 1540 1572 299 139 39 chr1 125252223 125252963 -71942469 + RMER13A LTR ERVK 3 816 -44 4 1540 591 173 50 7 chr1 125252925 125253088 -71942344 + ORR1B1 LTR MaLR 152 394 0 4 1540 322 321 107 21 chr1 125253466 125253606 -71941826 - HAL1-3A_ME LINE L1 -421 2437 2286 4 1540 278 204 80 44 chr1 125253920 125254033 -71941399 + RMER17D LTR ERVK 387 503 -386 4 1540 501 281 68 50 chr1 125254135 125254356 -71941076 + MLT1B LTR MaLR 13 237 -153 4 1540 375 317 47 36 chr1 125254442 125254635 -71940797 + B3A SINE B2 3 197 -1 4 1540 568 363 0 6 chr1 125255627 125255799 -71939633 + B4A SINE B4 120 290 -2 4 1540 360 0 0 0 chr1 125257515 125257555 -71937877 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1540 212 163 0 0 chr1 125257646 125257689 -71937743 + T-rich Low_complexity Low_complexity 1 43 0 4 1540 1131 82 0 0 chr1 125257689 125257836 -71937596 - B1_Mm SINE Alu 0 147 1 4 1540 254 287 56 33 chr1 125258067 125258157 -71937275 + MIRb SINE MIR 106 197 -71 4 1540 180 77 0 0 chr1 125258369 125258395 -71937037 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1540 24 0 0 0 chr1 125258622 125258646 -71936786 + AT_rich Low_complexity Low_complexity 1 24 0 4 1540 257 346 18 73 chr1 125258906 125259071 -71936361 + B4A SINE B4 18 173 -119 4 1540 216 196 0 19 chr1 125259484 125259536 -71935896 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 4 1540 183 100 0 0 chr1 125260108 125260138 -71935294 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 4 1540 294 50 0 0 chr1 125260170 125260210 -71935222 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1540 378 0 0 0 chr1 125260210 125260251 -71935181 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1540 318 339 16 25 chr1 125260253 125260374 -71935058 - ID_B1 SINE B4 -21 203 84 4 1540 23 33 0 0 chr1 125260659 125260689 -71934743 + AT_rich Low_complexity Low_complexity 1 30 0 4 1540 21 36 0 0 chr1 125260917 125260945 -71934487 + AT_rich Low_complexity Low_complexity 1 28 0 4 1540 233 279 68 51 chr1 125262199 125262316 -71933116 + RMER15 LTR ERVL 347 465 -110 4 1540 315 284 11 22 chr1 125262590 125262680 -71932752 + B4 SINE B4 51 139 -153 4 1540 227 311 65 46 chr1 125262635 125262743 -71932689 + PB1D9 SINE Alu 9 118 -2 4 1540 240 59 0 0 chr1 125262781 125262815 -71932617 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1540 207 108 0 26 chr1 125263568 125263606 -71931826 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1540 812 299 70 60 chr1 125263650 125264058 -71931374 + MTE2a LTR MaLR 1 405 -14 4 1540 26 50 0 0 chr1 125264144 125264184 -71931248 + AT_rich Low_complexity Low_complexity 1 40 0 4 1540 1041 319 55 23 chr1 125264461 125264894 -71930538 + Lx8 LINE L1 6906 7352 -121 4 1540 203 81 81 0 chr1 125264910 125264947 -71930485 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 4 1540 1175 54 0 0 chr1 125264947 125265094 -71930338 - B1_Mus2 SINE Alu 0 147 1 4 1540 342 0 0 0 chr1 125266096 125266134 -71929298 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1540 221 211 19 0 chr1 125266304 125266356 -71929076 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1540 314 298 88 57 chr1 125266446 125266674 -71928758 - L1M5 LINE L1 -1991 4155 3921 4 1540 871 9 19 0 chr1 125266845 125266953 -71928479 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1540 588 275 215 26 chr1 125266984 125267212 -71928220 - B4 SINE B4 -18 274 4 4 1540 741 23 0 0 chr1 125267227 125267314 -71928118 + (TCC)n Simple_repeat Simple_repeat 2 88 0 4 1540 295 299 56 56 chr1 125267361 125267503 -71927929 - B1F2 SINE Alu -7 142 1 5 1540 26 50 0 0 chr1 125267777 125267817 -71927615 + AT_rich Low_complexity Low_complexity 1 40 0 5 1540 243 299 13 0 chr1 125268151 125268228 -71927204 - ID4 SINE ID -5 78 1 5 1540 456 266 89 89 chr1 125268520 125268677 -71926755 - RSINE1 SINE B4 0 165 9 5 1540 559 368 47 5 chr1 125270058 125270271 -71925161 - ID_B1 SINE B4 -2 222 1 5 1540 227 400 61 1 chr1 125271640 125271790 -71923642 + MIR3 SINE MIR 30 187 -21 5 1540 604 331 5 22 chr1 125271839 125272024 -71923408 + B3A SINE B2 17 198 0 5 1540 713 279 19 37 chr1 125272150 125272366 -71923066 + B3 SINE B2 1 212 -4 5 1540 384 59 0 0 chr1 125272546 125272597 -71922835 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1540 370 185 46 0 chr1 125273326 125273391 -71922041 + RSINE1 SINE B4 76 143 -22 5 1540 474 49 0 0 chr1 125273396 125273457 -71921975 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1540 22 0 0 0 chr1 125273460 125273482 -71921950 + AT_rich Low_complexity Low_complexity 1 22 0 5 1540 891 78 0 0 chr1 125273831 125273960 -71921472 + (TG)n Simple_repeat Simple_repeat 1 129 0 5 1540 723 340 12 46 chr1 125273977 125274236 -71921196 - B4 SINE B4 -19 273 24 5 1540 527 313 30 7 chr1 125274442 125274577 -71920855 + B3A SINE B2 6 143 -55 5 1540 303 270 51 40 chr1 125275146 125275296 -71920136 - B3A SINE B2 0 198 1 5 1540 226 207 153 35 chr1 125275618 125275703 -71919729 + Lx8 LINE L1 7154 7248 -225 5 1540 602 361 29 14 chr1 125276553 125276834 -71918598 - B4A SINE B4 -6 286 2 5 1540 212 302 0 0 chr1 125278144 125278207 -71917225 + GA-rich Low_complexity Low_complexity 3 65 0 5 1540 2047 208 97 54 chr1 125278562 125279132 -71916300 + Lx5 LINE L1 6453 7046 -4 5 1540 1074 284 135 27 chr1 125279194 125279668 -71915764 + RMER5 LTR ERV1 1 525 -9 5 1540 306 0 0 0 chr1 125279687 125279721 -71915711 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1540 6560 47 2 4 chr1 125279849 125280661 -71914771 + L1Md_F2 LINE L1 5761 6571 -11 5 1540 414 129 0 0 chr1 125280684 125280769 -71914663 + (A)n Simple_repeat Simple_repeat 1 85 0 5 1540 711 282 0 29 chr1 125281179 125281354 -71914078 - B3A SINE B2 -2 196 27 5 1540 323 280 72 13 chr1 125282129 125282281 -71913151 - L1MA6 LINE L1 -82 6218 6058 5 1540 239 289 16 3 chr1 125282440 125282514 -71912918 - B1F1 SINE Alu -41 76 3 5 1540 183 261 22 0 chr1 125282780 125282826 -71912606 + L2a LINE L2 3289 3335 -91 5 1540 246 285 127 26 chr1 125282942 125283024 -71912408 - Lx9 LINE L1 -29 7615 7521 5 1540 285 29 0 0 chr1 125283024 125283058 -71912374 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1540 246 285 127 26 chr1 125283058 125283242 -71912190 - Lx9 LINE L1 -124 7520 7323 5 1540 1002 159 159 0 chr1 125283250 125283445 -71911987 - URR1A DNA MER1_type 0 226 1 5 1540 301 329 84 13 chr1 125283511 125283665 -71911767 + RSINE1 SINE B4 1 165 0 5 1540 260 304 129 9 chr1 125284154 125284270 -71911162 + B1F SINE Alu 15 144 -5 5 1540 210 105 0 0 chr1 125284433 125284471 -71910961 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1540 1944 261 122 38 chr1 125284775 125286103 -71909329 - RMER1B Other Other -77 989 1 5 1540 387 60 0 0 chr1 125286696 125286746 -71908686 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1540 582 319 0 0 chr1 125286760 125286895 -71908537 - RSINE1 SINE B4 -6 159 25 5 1540 1043 245 152 9 chr1 125287777 125288107 -71907325 + MTEa LTR MaLR 1 377 -2 5 1540 213 237 102 0 chr1 125288419 125288478 -71906954 - B3A SINE B2 -127 71 7 5 1540 265 314 0 0 chr1 125288833 125288903 -71906529 + B4 SINE B4 1 70 -222 5 1540 223 185 26 69 chr1 125288910 125289026 -71906406 + (TTAAA)n Simple_repeat Simple_repeat 3 113 0 5 1540 545 291 67 13 chr1 125289071 125289221 -71906211 + B4 SINE B4 135 292 0 5 1540 1079 310 45 81 chr1 125289896 125290426 -71905006 + MT2A LTR ERVL 19 529 -4 5 1540 491 301 46 0 chr1 125291379 125291532 -71903900 + Lx8 LINE L1 7173 7332 -141 5 1540 200 200 0 0 chr1 125291534 125291579 -71903853 + (CAA)n Simple_repeat Simple_repeat 3 47 0 5 1540 336 48 0 0 chr1 125291664 125291706 -71903726 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1540 702 327 90 38 chr1 125291931 125292198 -71903234 - B4A SINE B4 0 292 12 5 1540 574 284 35 98 chr1 125292255 125292420 -71903012 + B3A SINE B2 3 163 -35 5 1540 444 99 0 0 chr1 125292420 125292491 -71902941 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1540 405 284 35 98 chr1 125292491 125292528 -71902904 + B2_Mm2 SINE B2 159 192 -3 5 1540 261 0 0 0 chr1 125293038 125293067 -71902365 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1540 300 347 47 13 chr1 125293874 125294023 -71901409 - RSINE1 SINE B4 -9 156 3 5 1540 424 278 6 89 chr1 125294158 125294316 -71901116 + B1_Mur2 SINE Alu 5 149 0 5 1540 599 349 26 5 chr1 125294334 125294524 -71900908 + ID_B1 SINE B4 2 195 -29 5 1540 333 0 0 0 chr1 125294538 125294575 -71900857 + (CATA)n Simple_repeat Simple_repeat 1 37 0 5 1540 534 322 5 75 chr1 125294746 125294934 -71900498 + B4A SINE B4 1 175 -117 5 1540 217 271 133 108 chr1 125294840 125294960 -71900472 + B1_Mur3 SINE Alu 10 132 -17 5 1540 255 254 0 0 chr1 125295957 125296016 -71899416 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1540 6164 74 1 4 chr1 125296020 125296835 -71898597 - L1Md_F2 LINE L1 -8 6574 5762 5 1540 457 286 106 6 chr1 125296951 125297130 -71898302 - B3A SINE B2 -1 197 1 5 1540 404 281 0 40 chr1 125298611 125298737 -71896695 + Lx4B LINE L1 6919 7039 -19 5 1540 359 307 97 19 chr1 125299123 125299317 -71896115 - B4 SINE B4 -85 207 2 5 1540 21 0 0 0 chr1 125300002 125300023 -71895409 + AT_rich Low_complexity Low_complexity 1 21 0 5 1540 613 277 31 6 chr1 125300273 125300433 -71894999 - B3A SINE B2 -34 164 1 5 1540 243 79 0 0 chr1 125301163 125301201 -71894231 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1540 297 167 0 0 chr1 125301531 125301585 -71893847 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1540 540 68 0 0 chr1 125301625 125301698 -71893734 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1540 372 310 115 17 chr1 125301713 125301967 -71893465 - B4A SINE B4 -16 276 2 5 1540 507 304 55 24 chr1 125302650 125302942 -71892490 - MTEa LTR MaLR -8 371 2 5 1540 468 0 0 0 chr1 125303332 125303384 -71892048 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1540 426 39 0 0 chr1 125303384 125303435 -71891997 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1540 332 341 39 31 chr1 125303453 125303583 -71891849 - RSINE1 SINE B4 -33 132 2 5 1540 223 365 79 8 chr1 125303629 125303756 -71891676 + ID_B1 SINE B4 80 215 -9 5 1540 3175 56 0 5 chr1 125303990 125304388 -71891044 - MTA_Mm LTR MaLR 0 396 1 5 1540 28 61 0 0 chr1 125304548 125304597 -71890835 + AT_rich Low_complexity Low_complexity 1 49 0 5 192 261 306 30 62 chr1 125304704 125304874 -71890558 + B3 SINE B2 43 205 -11 5 1541 784 271 9 42 chr1 125305458 125305674 -71889758 - B3 SINE B2 -6 210 2 5 1541 333 0 0 0 chr1 125305880 125305917 -71889515 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 5 1541 398 270 30 60 chr1 125306577 125306711 -71888721 + MTE2a LTR MaLR 170 299 -80 5 1541 306 297 100 52 chr1 125306753 125306984 -71888448 - L1MEg LINE L1 -5204 880 639 5 1541 517 323 68 39 chr1 125307891 125308097 -71887335 - B4A SINE B4 -14 278 67 5 1541 315 0 0 0 chr1 125308603 125308638 -71886794 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1541 7012 59 22 7 chr1 125308755 125309675 -71885757 + L1Md_F2 LINE L1 5644 6577 -5 5 1541 1059 82 0 7 chr1 125309915 125310062 -71885370 - B1_Mus2 SINE Alu -1 146 1 5 1541 1070 206 47 13 chr1 125310122 125310358 -71885074 + MTEb LTR MaLR 136 379 0 5 1541 33 25 0 0 chr1 125310565 125310605 -71884827 + AT_rich Low_complexity Low_complexity 1 40 0 5 1541 511 311 65 20 chr1 125310811 125311011 -71884421 + B3 SINE B2 3 211 -5 5 1541 1228 142 0 22 chr1 125311484 125311707 -71883725 - Lx3B LINE L1 -4 6969 6752 5 1541 1584 107 4 12 chr1 125311708 125311955 -71883477 + L1_Mur1 LINE L1 4691 4935 -951 5 1541 201 238 0 0 chr1 125313355 125313397 -71882035 + CT-rich Low_complexity Low_complexity 4 45 0 5 1541 189 0 0 0 chr1 125313444 125313465 -71881967 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1541 286 350 88 56 chr1 125313465 125313579 -71881853 - B4 SINE B4 -69 223 113 5 1541 495 69 0 0 chr1 125313579 125313651 -71881781 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1541 286 350 88 56 chr1 125313651 125313751 -71881681 - B4 SINE B4 -180 112 3 5 1541 447 338 62 0 chr1 125314202 125314347 -71881085 + RSINE1 SINE B4 5 158 -7 5 1541 24 0 0 0 chr1 125314413 125314437 -71880995 + AT_rich Low_complexity Low_complexity 1 24 0 5 1541 261 0 0 0 chr1 125315392 125315421 -71880011 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1541 2882 86 10 0 chr1 125315424 125315818 -71879614 - MTA_Mm LTR MaLR -2 398 1 5 1541 7114 109 22 7 chr1 125315818 125316899 -71878533 - MTA_Mm-int LTR MaLR 0 1098 1 5 1541 3059 78 0 5 chr1 125316899 125317297 -71878135 - MTA_Mm LTR MaLR 0 396 1 5 1541 473 266 114 25 chr1 125317308 125317466 -71877966 - Lx8 LINE L1 -242 7231 7060 5 1541 532 306 63 15 chr1 125317700 125317906 -71877526 - ID_B1 SINE B4 -8 216 1 5 1541 531 294 64 18 chr1 125318111 125318329 -71877103 - Lx8 LINE L1 -144 7329 7102 5 1541 387 0 0 0 chr1 125318877 125318920 -71876512 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1541 306 0 0 0 chr1 125318920 125318953 -71876479 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1541 258 345 110 73 chr1 125319292 125319511 -71875921 - B4 SINE B4 -61 231 5 6 1541 677 267 50 30 chr1 125319628 125319829 -71875603 - ID_B1 SINE B4 -17 207 3 6 1541 229 78 78 0 chr1 125320381 125320432 -71875000 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 1541 261 0 0 0 chr1 125320435 125320464 -71874968 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1541 337 301 0 55 chr1 125320749 125320932 -71874500 + GA-rich Low_complexity Low_complexity 5 177 0 6 1541 225 323 31 0 chr1 125320964 125321029 -71874403 + RSINE1 SINE B4 93 159 -6 6 1541 529 340 35 22 chr1 125321840 125322045 -71873387 + B4A SINE B4 83 292 0 6 1541 187 272 58 69 chr1 125322203 125322290 -71873142 + MER5A DNA MER1_type 29 114 -75 6 1541 320 77 19 0 chr1 125322604 125322656 -71872776 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 6 1541 2081 200 32 2 chr1 125322759 125323160 -71872272 - MTC LTR MaLR -8 413 1 6 1541 486 33 0 0 chr1 125323324 125323384 -71872048 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 1541 200 296 55 18 chr1 125323562 125323617 -71871815 + MIRc SINE MIR 26 82 -186 6 1541 586 254 75 32 chr1 125324985 125325172 -71870260 - B4 SINE B4 -3 289 95 6 1541 793 293 15 113 chr1 125325507 125325710 -71869722 - B3A SINE B2 -9 184 2 6 1541 22 0 0 0 chr1 125326081 125326103 -71869329 + AT_rich Low_complexity Low_complexity 1 22 0 6 1541 419 326 20 40 chr1 125326760 125326910 -71868522 + RSINE1 SINE B4 2 148 -17 6 1541 735 290 45 13 chr1 125327085 125327309 -71868123 + Lx8 LINE L1 7122 7352 -121 6 1541 573 125 10 40 chr1 125327457 125327557 -71867875 - RLTR15 LTR ERVK -262 97 1 6 1541 3063 48 8 5 chr1 125327569 125327964 -71867468 + MTA_Mm LTR MaLR 1 396 0 6 1541 635 381 37 11 chr1 125327967 125328235 -71867197 + B4A SINE B4 16 290 -2 6 1541 363 23 0 0 chr1 125328962 125329006 -71866426 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1541 725 321 17 44 chr1 125329034 125329330 -71866102 - B4 SINE B4 -4 288 1 6 1541 4900 125 5 1 chr1 125330101 125330970 -71864462 - L1_Mus3 LINE L1 -610 5956 5083 6 1541 4366 107 8 9 chr1 125330971 125331634 -71863798 + L1_Mus3 LINE L1 5970 6631 -7 6 1541 213 39 0 0 chr1 125332167 125332193 -71863239 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1541 264 353 69 110 chr1 125334022 125334267 -71861165 + B4A SINE B4 18 252 -40 6 1541 21 36 0 0 chr1 125334379 125334407 -71861025 + AT_rich Low_complexity Low_complexity 1 28 0 6 1541 222 62 0 0 chr1 125335001 125335033 -71860399 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1541 696 287 98 11 chr1 125335484 125335684 -71859748 - B3A SINE B2 -1 194 1 6 1541 373 149 128 197 chr1 125336178 125336295 -71859137 - B1F SINE Alu 0 149 17 6 1541 450 79 0 0 chr1 125336502 125336565 -71858867 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1541 580 296 45 13 chr1 125337162 125337324 -71858108 - ID_B1 SINE B4 -9 215 50 6 1541 279 0 0 0 chr1 125337525 125337556 -71857876 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1541 22 35 0 0 chr1 125337583 125337612 -71857820 + AT_rich Low_complexity Low_complexity 1 29 0 6 1541 828 30 0 0 chr1 125338369 125338468 -71856964 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1541 266 340 173 77 chr1 125338588 125338744 -71856688 - B4A SINE B4 -120 172 2 6 1541 676 204 6 6 chr1 125339201 125339378 -71856054 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1541 653 283 25 0 chr1 125339779 125339938 -71855494 + RSINE1 SINE B4 3 165 0 6 1541 23 0 0 0 chr1 125340388 125340411 -71855021 + AT_rich Low_complexity Low_complexity 1 23 0 6 1541 23 86 0 0 chr1 125340778 125340836 -71854596 + AT_rich Low_complexity Low_complexity 1 58 0 6 1541 607 237 74 0 chr1 125341044 125341179 -71854253 + B1_Mur4 SINE Alu 1 145 -5 6 1541 262 358 121 32 chr1 125341247 125341371 -71854061 - B3A SINE B2 -16 182 48 6 1541 8173 221 147 43 chr1 125342714 125343880 -71851552 + L1_Mur3 LINE L1 890 2071 -3806 6 1541 180 0 0 0 chr1 125343880 125343900 -71851532 + (CCA)n Simple_repeat Simple_repeat 3 22 0 6 1541 8173 204 181 52 chr1 125343900 125344092 -71851340 + L1_Mur3 LINE L1 2072 2264 -3613 6 1541 309 51 0 0 chr1 125344092 125344131 -71851301 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 6 1541 8173 204 181 52 chr1 125344131 125344614 -71850818 + L1_Mur3 LINE L1 2265 2725 -3152 6 1541 300 27 0 0 chr1 125344614 125344651 -71850781 + (CAA)n Simple_repeat Simple_repeat 3 39 0 6 1541 8173 204 181 52 chr1 125344651 125345386 -71850046 + L1_Mur3 LINE L1 2726 3813 -2064 6 1541 531 0 0 0 chr1 125345386 125345445 -71849987 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1541 863 103 0 25 chr1 125345452 125345611 -71849821 + (GAA)n Simple_repeat Simple_repeat 3 157 0 6 1541 8173 204 181 52 chr1 125345611 125346194 -71849238 + L1_Mur3 LINE L1 3821 4443 -1434 6 1541 285 336 93 104 chr1 125347026 125347315 -71848117 + RMER15 LTR ERVL 276 561 -14 6 1541 22 0 0 0 chr1 125347805 125347827 -71847605 + AT_rich Low_complexity Low_complexity 1 22 0 6 1541 320 94 19 0 chr1 125347828 125347881 -71847551 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1541 303 258 15 0 chr1 125347923 125347989 -71847443 - B3A SINE B2 -58 140 74 6 1541 1449 240 3 10 chr1 125348509 125348811 -71846621 - MTC LTR MaLR 0 421 122 6 1541 2844 201 39 29 chr1 125348811 125348827 -71846605 - RLTR17 LTR ERVK 0 692 677 6 1541 393 22 0 0 chr1 125348827 125348873 -71846559 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 6 1541 285 51 0 0 chr1 125348874 125348913 -71846519 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 6 1541 2844 201 39 29 chr1 125348913 125349369 -71846063 - RLTR17 LTR ERVK -16 676 206 6 1541 686 44 11 0 chr1 125349369 125349459 -71845973 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 6 1541 2844 201 39 29 chr1 125349459 125349572 -71845860 - RLTR17 LTR ERVK -487 205 99 6 1541 593 243 0 45 chr1 125349577 125349732 -71845700 - MTC LTR MaLR -273 148 1 6 1541 428 308 85 37 chr1 125349758 125349947 -71845485 - B3A SINE B2 0 198 1 6 1541 984 56 0 0 chr1 125350680 125350805 -71844627 - B1_Mus1 SINE Alu -1 147 23 6 1541 518 175 10 10 chr1 125350944 125351042 -71844390 - ORR1C2 LTR MaLR -18 366 269 6 1541 350 256 609 12 chr1 125351555 125351711 -71843721 - ORR1C2 LTR MaLR -111 273 25 6 1541 357 318 45 9 chr1 125351753 125351975 -71843457 - L1M2 LINE L1 -667 5630 5401 6 1541 28 29 0 0 chr1 125352111 125352146 -71843286 + AT_rich Low_complexity Low_complexity 1 35 0 6 1541 438 79 0 0 chr1 125352146 125352209 -71843223 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1541 546 354 14 0 chr1 125352214 125352361 -71843071 - B3A SINE B2 -42 156 8 6 1541 1315 283 38 19 chr1 125352554 125352922 -71842510 + MTEa LTR MaLR 3 377 -2 6 1541 1413 67 15 0 chr1 125353218 125353413 -71842019 - L1Md_F2 LINE L1 0 6582 6385 6 1541 534 255 43 19 chr1 125353894 125354055 -71841377 + MTD LTR MaLR 233 388 -31 6 1541 331 389 49 0 chr1 125354129 125354273 -71841159 + ID_B1 SINE B4 3 153 -71 6 1541 25 83 0 0 chr1 125354588 125354648 -71840784 + AT_rich Low_complexity Low_complexity 1 60 0 6 1541 185 0 40 0 chr1 125354675 125354700 -71840732 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1541 996 123 0 20 chr1 125354909 125355058 -71840374 + B1_Mus2 SINE Alu 2 147 0 6 1541 240 59 0 0 chr1 125355058 125355092 -71840340 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 6 1541 562 302 71 20 chr1 125355619 125355815 -71839617 + ID_B1 SINE B4 5 210 -14 6 1541 1199 279 57 0 chr1 125357023 125357321 -71838111 - MTEa LTR MaLR -4 375 61 6 1541 531 0 0 0 chr1 125357493 125357552 -71837880 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1541 367 297 86 26 chr1 125357921 125358073 -71837359 + B4A SINE B4 5 165 -127 6 1541 5087 110 1 7 chr1 125358705 125359474 -71835958 - L1_Mus2 LINE L1 -478 5405 4641 6 1541 7516 81 2 1 chr1 125359470 125360609 -71834823 + L1_Mus2 LINE L1 5426 6565 -1 6 1541 28 29 0 0 chr1 125360723 125360758 -71834674 + AT_rich Low_complexity Low_complexity 1 35 0 6 1541 6965 114 17 24 chr1 125360869 125361931 -71833501 + Lx LINE L1 5588 6642 -12 6 1541 597 329 23 9 chr1 125361953 125362174 -71833258 + RMER15 LTR ERVL 338 561 -14 6 1541 36 62 0 0 chr1 125363216 125363280 -71832152 + AT_rich Low_complexity Low_complexity 1 64 0 6 1541 777 301 88 35 chr1 125363287 125363632 -71831800 - MT2B LTR ERVL -34 567 74 6 1541 684 54 0 0 chr1 125363878 125363971 -71831461 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1541 626 329 98 0 chr1 125363975 125364221 -71831211 - B4 SINE B4 -18 274 5 6 1541 495 0 0 0 chr1 125364259 125364314 -71831118 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1541 744 71 0 0 chr1 125364314 125364412 -71831020 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1541 848 312 40 26 chr1 125364413 125364686 -71830746 - B4A SINE B4 -8 284 8 6 1541 180 0 0 0 chr1 125365004 125365024 -71830408 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1541 234 308 0 25 chr1 125365225 125365305 -71830127 + B2_Mm2 SINE B2 19 96 -99 6 1541 3468 227 57 43 chr1 125365779 125366074 -71829358 + L1_Mur3 LINE L1 352 618 -7110 6 1541 2011 52 0 0 chr1 125366074 125366322 -71829110 - L1Md_A LINE L1 0 6582 6335 6 1541 3468 208 56 45 chr1 125366322 125367338 -71828094 + L1_Mur3 LINE L1 619 1670 -4210 6 1541 387 0 0 0 chr1 125367352 125367395 -71828037 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1541 497 162 38 9 chr1 125367395 125367501 -71827931 + L1_Mur3 LINE L1 3242 3350 -2530 6 1541 252 0 0 0 chr1 125367625 125367653 -71827779 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1541 797 83 8 0 chr1 125367657 125367789 -71827643 + (TC)n Simple_repeat Simple_repeat 2 134 0 6 1541 659 304 90 49 chr1 125367830 125368096 -71827336 - B4A SINE B4 -10 282 6 6 1541 412 358 40 7 chr1 125368946 125369098 -71826334 - B4 SINE B4 -12 280 124 6 1541 280 48 0 0 chr1 125369338 125369380 -71826052 + L1_Mus2 LINE L1 6525 6566 0 6 1541 804 303 52 9 chr1 125369505 125369735 -71825697 + B4A SINE B4 43 282 -10 6 1541 1924 251 31 83 chr1 125369754 125369864 -71825568 + RLTR25A LTR ERVK 1 112 -991 6 1541 390 42 0 0 chr1 125369864 125369912 -71825520 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1541 1924 230 26 79 chr1 125369912 125370400 -71825032 + RLTR25A LTR ERVK 113 693 -410 6 1541 21 0 0 0 chr1 125370463 125370484 -71824948 + AT_rich Low_complexity Low_complexity 1 21 0 6 1541 5344 43 1 3 chr1 125370484 125371132 -71824300 - L1Md_F2 LINE L1 -20 6562 5916 7 1541 315 292 32 110 chr1 125371237 125371391 -71824041 - B1F1 SINE Alu -7 142 1 7 1541 311 267 0 0 chr1 125371461 125371553 -71823879 - L1MD LINE L1 -3326 2820 2729 7 1541 639 345 25 17 chr1 125371842 125372246 -71823186 + L1M2 LINE L1 2481 2887 -3256 7 1541 648 281 86 11 chr1 125372251 125372438 -71822994 + B3 SINE B2 1 201 -15 7 1541 573 128 0 0 chr1 125373648 125373750 -71821682 + (TA)n Simple_repeat Simple_repeat 1 102 0 7 1541 369 122 0 0 chr1 125373750 125373824 -71821608 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1541 567 281 84 46 chr1 125374152 125374391 -71821041 - MTE2a LTR MaLR -6 373 126 7 1541 589 227 0 18 chr1 125374425 125374537 -71820895 + B3 SINE B2 2 111 -105 7 1541 1190 151 81 5 chr1 125374536 125374774 -71820658 + ORR1C1 LTR MaLR 54 378 0 7 1541 285 103 50 25 chr1 125374800 125374880 -71820552 + (TCTCTG)n Simple_repeat Simple_repeat 2 83 0 7 1541 876 236 50 5 chr1 125374881 125375081 -71820351 + ORR1D1 LTR MaLR 166 374 0 7 1541 357 303 10 0 chr1 125375284 125375383 -71820049 - PB1D10 SINE Alu -17 100 1 7 1541 5298 122 30 14 chr1 125375410 125376265 -71819167 + Lx2 LINE L1 5775 6643 -354 7 1541 1115 154 69 15 chr1 125376265 125376469 -71818963 + Lx2 LINE L1 6775 6989 -8 7 1541 725 290 106 29 chr1 125376630 125376936 -71818496 + ORR1E LTR MaLR 11 379 0 7 1541 423 198 37 12 chr1 125377124 125377206 -71818226 - MTE2a LTR MaLR -294 84 1 7 1541 618 230 27 0 chr1 125377206 125377354 -71818078 - ORR1D1 LTR MaLR -221 153 2 7 1541 483 327 100 4 chr1 125377700 125377970 -71817462 - L1M4c LINE L1 -6072 312 17 7 1541 400 304 98 66 chr1 125378764 125378947 -71816485 + B3A SINE B2 2 190 -8 7 1541 1554 82 36 0 chr1 125379038 125379258 -71816174 - L1_Mus2 LINE L1 0 6566 6339 7 1541 1405 58 0 16 chr1 125379735 125379927 -71815505 + L1Md_F3 LINE L1 6385 6573 -11 7 1541 25 31 0 0 chr1 125380444 125380476 -71814956 + AT_rich Low_complexity Low_complexity 1 32 0 7 1541 21 57 0 0 chr1 125380588 125380623 -71814809 + AT_rich Low_complexity Low_complexity 1 35 0 7 1541 472 294 15 0 chr1 125381408 125381544 -71813888 + RSINE1 SINE B4 11 148 -17 7 1541 552 280 0 15 chr1 125381539 125381673 -71813759 + ID_B1 SINE B4 85 216 -8 7 1541 273 109 0 0 chr1 125381675 125381721 -71813711 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 7 1541 28 29 0 0 chr1 125381743 125381778 -71813654 + AT_rich Low_complexity Low_complexity 1 35 0 7 1541 189 0 0 0 chr1 125381993 125382014 -71813418 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1541 426 318 120 73 chr1 125382047 125382322 -71813110 - B4 SINE B4 -2 290 3 7 1541 240 200 0 0 chr1 125382899 125382974 -71812458 + CT-rich Low_complexity Low_complexity 1 75 0 7 1541 414 0 0 0 chr1 125382974 125383020 -71812412 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1541 408 270 0 33 chr1 125383121 125383213 -71812219 - B4A SINE B4 -127 165 77 7 1541 758 306 10 5 chr1 125383214 125383421 -71812011 - B3 SINE B2 0 216 9 7 1541 218 346 12 24 chr1 125384013 125384096 -71811336 + B4A SINE B4 3 84 -208 7 1541 453 81 0 0 chr1 125384289 125384351 -71811081 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1541 4087 65 0 9 chr1 125384581 125385111 -71810321 + L1Md_F2 LINE L1 6046 6570 -12 7 1541 1796 176 24 6 chr1 125385445 125385777 -71809655 + ORR1A1 LTR MaLR 1 338 -8 7 1541 534 31 0 0 chr1 125385790 125385854 -71809578 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1541 1066 284 21 21 chr1 125386105 125386443 -71808989 + Lx9 LINE L1 6998 7335 -309 7 1541 447 256 77 2 chr1 125388686 125388864 -71806568 - L1MA4A LINE L1 -1543 5930 5742 7 1541 1602 226 83 16 chr1 125389514 125389900 -71805532 + MTD LTR MaLR 1 412 -7 7 1541 1222 276 85 18 chr1 125390703 125391091 -71804341 + MTD LTR MaLR 6 419 0 7 1541 626 349 29 16 chr1 125392836 125393327 -71802105 + L1_Mur3 LINE L1 28 675 -7053 7 1541 3433 218 119 83 chr1 125393381 125394123 -71801309 + L1_Mur3 LINE L1 864 1653 -4227 7 1541 225 0 0 0 chr1 125394123 125394148 -71801284 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 1541 3433 216 188 50 chr1 125394148 125395297 -71800135 + L1_Mur3 LINE L1 1654 2928 -2952 7 1541 2502 118 87 17 chr1 125395336 125395860 -71799572 + L1VL4 LINE L1 494 1052 -2507 7 1541 3113 54 5 33 chr1 125395828 125396247 -71799185 + L1Md_F2 LINE L1 6151 6557 -25 7 1541 224 30 30 0 chr1 125396250 125396283 -71799149 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 1541 963 147 6 6 chr1 125396283 125396461 -71798971 + L1VL4 LINE L1 1031 1208 -2351 7 1541 581 265 46 0 chr1 125396500 125396651 -71798781 - ORR1D1 LTR MaLR -212 162 5 7 1541 425 310 33 37 chr1 125398410 125398581 -71796851 - ORR1D1 LTR MaLR -3 371 153 7 1541 1397 158 61 0 chr1 125398892 125399139 -71796293 - Lx LINE L1 -6 6648 6387 7 1541 1038 148 0 0 chr1 125399471 125399647 -71795785 + (GGA)n Simple_repeat Simple_repeat 2 177 0 7 1541 2287 166 27 14 chr1 125400766 125401207 -71794225 - Lx6 LINE L1 -678 5202 4756 7 1541 1627 194 231 16 chr1 125401207 125401756 -71793676 + Lx6 LINE L1 5280 5952 -1508 7 1541 906 142 0 13 chr1 125401767 125401917 -71793515 - URR1A DNA MER1_type -2 224 77 7 1541 5283 259 53 15 chr1 125401964 125403404 -71792028 + Lx6 LINE L1 5961 7456 -4 7 1541 24 32 0 0 chr1 125403411 125403442 -71791990 + AT_rich Low_complexity Low_complexity 1 31 0 7 1541 795 253 173 25 chr1 125405474 125405640 -71789792 - ORR1D1 LTR MaLR 0 374 159 7 1541 459 0 0 0 chr1 125405640 125405691 -71789741 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1541 675 37 0 0 chr1 125405691 125405772 -71789660 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1541 795 253 173 25 chr1 125405772 125405928 -71789504 - ORR1D1 LTR MaLR -216 158 4 7 1541 3713 105 18 4 chr1 125408294 125408840 -71786592 - L1_Mus4 LINE L1 0 6636 6083 7 1541 1132 267 49 47 chr1 125408855 125409044 -71786388 - ORR1D1 LTR MaLR -6 368 185 7 1541 582 15 0 0 chr1 125409044 125409111 -71786321 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1541 1132 267 49 47 chr1 125409111 125409286 -71786146 - ORR1D1 LTR MaLR -190 184 3 7 1541 1445 167 107 7 chr1 125409379 125409668 -71785764 + ORR1A3 LTR MaLR 1 318 -8 7 1541 11027 21 1 0 chr1 125410976 125412262 -71783170 + L1Md_T LINE L1 4300 5586 -297 7 1541 8520 28 0 0 chr1 125412262 125413294 -71782138 + L1Md_T LINE L1 5587 6582 0 7 1541 500 318 55 37 chr1 125416189 125416352 -71779080 - ID_B1 SINE B4 -20 204 39 7 1541 346 409 18 0 chr1 125416798 125417018 -71778414 + Lx8 LINE L1 6997 7220 -253 7 1541 281 89 22 0 chr1 125417286 125417331 -71778101 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1541 22 56 0 0 chr1 125417423 125417459 -71777973 + AT_rich Low_complexity Low_complexity 1 36 0 7 1541 584 345 0 0 chr1 125417913 125418061 -71777371 - B1_Mur1 SINE Alu -1 148 1 7 1541 599 306 25 45 chr1 125418080 125418282 -71777150 + B3A SINE B2 1 198 0 7 1541 319 269 0 13 chr1 125418481 125418560 -71776872 - ID_B1 SINE B4 -4 220 143 7 1541 223 191 0 0 chr1 125418564 125418606 -71776826 + (CTTA)n Simple_repeat Simple_repeat 1 42 0 7 1541 333 368 48 0 chr1 125418606 125418731 -71776701 - ID_B1 SINE B4 -86 138 8 7 1541 660 286 12 12 chr1 125419761 125419927 -71775505 + MTE2b LTR MaLR 18 183 -196 7 1541 716 289 124 43 chr1 125419968 125420340 -71775092 + Lx8 LINE L1 7072 7473 0 7 1541 562 327 14 9 chr1 125420581 125420797 -71774635 + ID_B1 SINE B4 2 218 -6 7 1541 207 286 0 41 chr1 125420799 125420872 -71774560 + GA-rich Low_complexity Low_complexity 3 72 0 7 1541 285 271 6 186 chr1 125421045 125421140 -71774292 + Charlie12 DNA MER1_type 42 115 -2758 7 1541 387 41 0 0 chr1 125421140 125421189 -71774243 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1541 285 271 6 186 chr1 125421189 125421270 -71774162 + Charlie12 DNA MER1_type 116 186 -2687 7 1541 229 316 40 2 chr1 125423315 125423464 -71771968 - Lx9 LINE L1 -1728 5916 5727 7 1541 252 86 0 0 chr1 125423610 125423645 -71771787 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1541 290 270 0 0 chr1 125424383 125424457 -71770975 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1541 673 273 95 16 chr1 125424477 125424730 -71770702 - B4 SINE B4 -18 274 2 7 1541 435 281 61 77 chr1 125425224 125425521 -71769911 + B4A SINE B4 1 292 0 7 1541 581 387 22 0 chr1 125425905 125426127 -71769305 - B4A SINE B4 -62 230 4 7 1541 21 71 0 0 chr1 125426127 125426169 -71769263 + AT_rich Low_complexity Low_complexity 1 42 0 7 1541 330 26 0 0 chr1 125426224 125426263 -71769169 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1541 396 40 0 0 chr1 125426757 125426807 -71768625 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1541 2426 62 0 0 chr1 125427586 125427893 -71767539 + L1Md_F2 LINE L1 5280 5586 -297 7 1541 6875 77 35 13 chr1 125427893 125428868 -71766564 + L1Md_F2 LINE L1 5587 6582 0 7 1541 480 323 75 32 chr1 125429090 125429368 -71766064 + B4A SINE B4 3 292 0 7 1541 1913 260 128 40 chr1 125429824 125430519 -71764913 + MTD-int LTR MaLR 534 1258 0 7 1541 1331 264 58 11 chr1 125430520 125430868 -71764564 + MTD LTR MaLR 2 365 -54 7 1541 521 270 29 86 chr1 125431647 125431821 -71763611 - ID_B1 SINE B4 -7 217 54 7 1541 502 118 21 0 chr1 125433032 125433125 -71762307 + (TC)n Simple_repeat Simple_repeat 1 95 0 7 1541 562 189 0 48 chr1 125433290 125433479 -71761953 + C-rich Low_complexity Low_complexity 1 180 0 7 1541 210 299 9 48 chr1 125433495 125433652 -71761780 + CT-rich Low_complexity Low_complexity 1 150 0 7 1541 662 294 19 14 chr1 125434527 125434741 -71760691 - B3 SINE B2 0 216 2 7 1541 401 294 10 88 chr1 125434756 125434961 -71760471 - B3A SINE B2 -6 192 4 7 1541 21 71 0 0 chr1 125434970 125435012 -71760420 + AT_rich Low_complexity Low_complexity 1 42 0 7 1541 365 312 83 0 chr1 125435053 125435162 -71760270 - RSINE1 SINE B4 -36 129 12 7 1541 1638 101 0 12 chr1 125435372 125435612 -71759820 - L1_Mus1 LINE L1 0 6567 6331 7 1541 1499 50 0 0 chr1 125435612 125435792 -71759640 + L1_Mus1 LINE L1 6173 6352 -215 7 1542 676 274 54 24 chr1 125436037 125436190 -71759242 + B3A SINE B2 2 163 -35 7 1542 504 0 0 0 chr1 125436190 125436246 -71759186 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1542 411 107 0 0 chr1 125436247 125436322 -71759110 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 7 1542 676 305 43 28 chr1 125436322 125436368 -71759064 + B3A SINE B2 163 205 -11 7 1542 407 310 18 0 chr1 125436583 125436696 -71758736 + B3A SINE B2 1 115 -83 7 1542 221 216 128 51 chr1 125437085 125437163 -71758269 + B4 SINE B4 2 85 -207 8 1542 214 292 44 22 chr1 125437243 125437334 -71758098 + PB1D10 SINE Alu 25 117 0 8 1542 312 208 69 0 chr1 125437699 125437771 -71757661 + HAL1-2a_MD LINE L1 2432 2508 -516 8 1542 276 53 0 0 chr1 125437801 125437839 -71757593 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 8 1542 209 302 31 0 chr1 125438915 125439011 -71756421 + CT-rich Low_complexity Low_complexity 2 100 0 8 1542 186 10 0 149 chr1 125440215 125440336 -71755096 + (CATAC)n Simple_repeat Simple_repeat 4 106 0 8 1542 300 246 0 42 chr1 125441336 125441408 -71754024 - HAL1-3A_ME LINE L1 -816 2042 1974 8 1542 291 221 0 0 chr1 125441408 125441494 -71753938 + (TG)n Simple_repeat Simple_repeat 2 87 0 8 1542 309 323 0 23 chr1 125441502 125441635 -71753797 + (TATATG)n Simple_repeat Simple_repeat 4 133 0 8 1542 494 292 82 25 chr1 125441652 125441803 -71753629 - B4 SINE B4 -12 280 121 8 1542 1941 141 3 4 chr1 125441803 125442116 -71753316 + RLTR10E LTR ERVK 1 388 -2 8 1542 334 327 28 37 chr1 125442127 125442235 -71753197 - B4 SINE B4 -176 116 10 8 1542 598 295 68 34 chr1 125442996 125443209 -71752223 + Lx8 LINE L1 7119 7330 -143 8 1542 494 16 0 16 chr1 125443209 125443273 -71752159 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1542 598 295 68 34 chr1 125443273 125443322 -71752110 + Lx8 LINE L1 7331 7389 -84 8 1542 21 36 0 0 chr1 125443392 125443420 -71752012 + AT_rich Low_complexity Low_complexity 1 28 0 8 1542 21 57 0 0 chr1 125443492 125443527 -71751905 + AT_rich Low_complexity Low_complexity 1 35 0 8 1542 578 370 41 4 chr1 125443775 125443988 -71751444 + B4 SINE B4 1 214 -78 8 1542 180 0 0 0 chr1 125443988 125444008 -71751424 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 8 1542 578 370 41 4 chr1 125444008 125444065 -71751367 + B4 SINE B4 215 280 -12 8 1542 347 363 19 67 chr1 125444309 125444535 -71750897 - B3A SINE B2 -13 203 2 8 1542 22 0 0 0 chr1 125445028 125445050 -71750382 + AT_rich Low_complexity Low_complexity 1 22 0 8 1542 791 164 7 0 chr1 125445622 125445774 -71749658 + CT-rich Low_complexity Low_complexity 6 158 0 8 1542 1117 47 60 0 chr1 125445933 125446083 -71749349 + B2_Mm1a SINE B2 2 160 -33 8 1542 387 0 0 0 chr1 125446083 125446126 -71749306 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 8 1542 965 91 65 18 chr1 125446126 125446143 -71749289 + B2_Mm2 SINE B2 159 177 -18 8 1542 420 111 0 0 chr1 125446465 125446528 -71748904 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1542 448 375 66 0 chr1 125446552 125446704 -71748728 - B4 SINE B4 -44 248 87 8 1542 198 162 59 0 chr1 125446915 125446983 -71748449 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 8 1542 579 217 27 47 chr1 125447203 125447353 -71748079 - B1_Mur2 SINE Alu 0 149 3 8 1542 384 59 0 0 chr1 125447389 125447440 -71747992 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1542 4190 47 0 4 chr1 125447576 125448088 -71747344 - L1Md_F3 LINE L1 -11 5872 5363 8 1542 5568 35 4 3 chr1 125448090 125448771 -71746661 + L1Md_F3 LINE L1 5902 6583 -1 8 1542 1576 289 8 3 chr1 125448989 125449360 -71746072 - MTEa LTR MaLR -1 378 6 8 1542 440 289 29 121 chr1 125450050 125450290 -71745142 - ID_B1 SINE B4 -6 218 1 8 1542 278 340 64 9 chr1 125450462 125450572 -71744860 + MIRm SINE MIR 161 276 0 8 1542 417 20 0 0 chr1 125450897 125450947 -71744485 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1542 607 304 0 35 chr1 125451162 125451305 -71744127 - RSINE1 SINE B4 -23 142 5 8 1542 2496 94 19 6 chr1 125451337 125451699 -71743733 - L1_Mus3 LINE L1 -294 5589 5223 8 1542 7340 98 10 5 chr1 125451709 125452745 -71742687 + L1_Mus3 LINE L1 5594 6634 -4 8 1542 621 124 0 0 chr1 125454072 125454169 -71741263 + (TG)n Simple_repeat Simple_repeat 2 98 0 8 1542 5164 141 40 11 chr1 125454257 125455183 -71740249 - RMER17B LTR ERVK -5 953 1 8 1542 551 237 14 69 chr1 125455183 125455323 -71740109 + B3 SINE B2 73 204 -12 8 1542 278 194 0 0 chr1 125455892 125455959 -71739473 + T-rich Low_complexity Low_complexity 1 67 0 8 1542 3164 190 12 26 chr1 125456379 125457028 -71738404 + Lx3C LINE L1 6332 6971 -5 8 1542 21 36 0 0 chr1 125457249 125457277 -71738155 + AT_rich Low_complexity Low_complexity 1 28 0 8 1542 210 125 50 0 chr1 125457304 125457344 -71738088 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 8 1542 525 331 26 22 chr1 125457532 125457738 -71737694 + B3A SINE B2 8 216 0 8 1542 678 191 0 0 chr1 125458179 125458320 -71737112 + (TG)n Simple_repeat Simple_repeat 2 142 0 8 1542 404 336 88 76 chr1 125458362 125458600 -71736832 - B4A SINE B4 -11 281 41 8 1542 477 0 0 0 chr1 125458738 125458791 -71736641 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1542 812 274 11 0 chr1 125458794 125458973 -71736459 + MTE2a LTR MaLR 196 376 -3 8 1542 258 159 0 0 chr1 125459069 125459138 -71736294 + A-rich Low_complexity Low_complexity 1 69 0 8 1542 183 129 0 0 chr1 125460157 125460188 -71735244 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 8 1542 5338 234 59 49 chr1 125461752 125463407 -71732025 + L1_Mur3 LINE L1 2016 3688 -2192 8 1542 3276 93 17 2 chr1 125463407 125463868 -71731564 + L1_Mus3 LINE L1 6168 6635 -3 8 1542 5338 234 59 49 chr1 125463868 125464089 -71731343 + L1_Mur3 LINE L1 3689 3910 -1970 8 1542 8517 23 0 0 chr1 125464087 125465310 -71730122 - L1Md_A LINE L1 -1 6581 5359 8 1542 2219 201 28 70 chr1 125465310 125465376 -71730056 + L1_Mur3 LINE L1 3930 3975 -1905 8 1542 3973 78 14 22 chr1 125465376 125465930 -71729502 - L1_Mus2 LINE L1 -6 6560 6011 8 1542 2219 201 28 70 chr1 125465930 125466510 -71728922 + L1_Mur3 LINE L1 3976 4549 -1331 8 1542 711 172 0 24 chr1 125466510 125466635 -71728797 + B1_Mur4 SINE Alu 3 124 -26 8 1542 4726 250 74 32 chr1 125466639 125468353 -71727079 + Lx9 LINE L1 5730 7622 -22 8 1542 2309 117 18 13 chr1 125468382 125468771 -71726661 + Lx2 LINE L1 6605 6995 -2 8 1542 189 0 0 0 chr1 125469085 125469106 -71726326 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8 1542 524 320 29 48 chr1 125470237 125470256 -71725176 - B4 SINE B4 0 292 276 8 1542 432 0 0 0 chr1 125470256 125470304 -71725128 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1542 524 320 29 48 chr1 125470304 125470494 -71724938 - B4 SINE B4 -17 275 87 8 1542 375 224 30 114 chr1 125470926 125471092 -71724340 + Lx4B LINE L1 6903 7054 -4 8 1542 269 208 165 25 chr1 125471408 125471487 -71723945 + Lx8 LINE L1 7248 7337 -136 8 1542 336 189 0 0 chr1 125471612 125471686 -71723746 + GA-rich Low_complexity Low_complexity 2 75 0 8 1542 1198 269 60 53 chr1 125471745 125472161 -71723271 + RMER4B LTR ERVK 33 451 -134 8 1542 205 308 15 0 chr1 125472427 125472492 -71722940 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1542 477 0 0 0 chr1 125472505 125472558 -71722874 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1542 476 342 5 11 chr1 125473150 125473336 -71722096 - B3A SINE B2 -12 186 2 8 1542 586 321 18 41 chr1 125473336 125473557 -71721875 - B3A SINE B2 0 216 1 8 1542 816 115 30 15 chr1 125473557 125473678 -71721754 - Lx LINE L1 -603 6051 5927 8 1542 763 125 0 8 chr1 125473678 125473807 -71721625 + Lx LINE L1 6524 6651 -3 8 1542 1466 258 35 6 chr1 125474236 125474602 -71720830 + MTE2b LTR MaLR 1 377 -2 8 1542 189 107 0 0 chr1 125475097 125475125 -71720307 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1542 576 302 48 99 chr1 125475271 125475624 -71719808 + Lx8 LINE L1 7123 7457 -16 8 1542 337 170 0 0 chr1 125476681 125476734 -71718698 + HAL1-3A_ME LINE L1 1975 2027 -831 8 1542 519 310 53 16 chr1 125477380 125477570 -71717862 - B3A SINE B2 0 198 2 8 1542 333 221 26 13 chr1 125477769 125477847 -71717585 - B4 SINE B4 -212 80 2 8 1542 342 300 110 0 chr1 125478563 125478663 -71716769 - PB1 SINE Alu -6 121 11 8 1542 732 163 82 0 chr1 125478927 125479062 -71716370 + B1_Mus1 SINE Alu 1 146 -2 8 1542 228 67 0 0 chr1 125479062 125479092 -71716340 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 1542 21 36 0 0 chr1 125479887 125479915 -71715517 + AT_rich Low_complexity Low_complexity 1 28 0 8 1542 513 0 0 0 chr1 125480616 125480673 -71714759 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1542 225 159 0 0 chr1 125480674 125480718 -71714714 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1542 637 325 12 121 chr1 125480770 125481026 -71714406 - B4 SINE B4 -52 240 13 8 1542 1135 313 57 8 chr1 125481216 125481567 -71713865 + MTE2b LTR MaLR 8 375 -4 8 1542 732 177 0 0 chr1 125482257 125482398 -71713034 + CT-rich Low_complexity Low_complexity 2 142 0 8 1542 2038 98 39 0 chr1 125482405 125482712 -71712720 - L1_Mus3 LINE L1 0 6638 6320 8 1542 317 62 21 0 chr1 125482843 125482891 -71712541 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1542 198 0 0 0 chr1 125483316 125483338 -71712094 + (TA)n Simple_repeat Simple_repeat 1 22 0 8 1542 22 56 0 0 chr1 125483343 125483379 -71712053 + AT_rich Low_complexity Low_complexity 1 36 0 8 1542 893 334 16 110 chr1 125483385 125483829 -71711603 + MTD LTR MaLR 1 402 -17 8 1542 538 302 85 19 chr1 125484550 125484820 -71710612 + B4A SINE B4 5 292 0 8 1542 279 0 0 0 chr1 125484832 125484863 -71710569 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1542 429 360 114 7 chr1 125485468 125485748 -71709684 - Lx8 LINE L1 -219 7254 6945 8 1542 4778 16 0 0 chr1 125485737 125486287 -71709145 + L1Md_T LINE L1 5037 5586 -297 8 1542 8684 18 0 6 chr1 125486287 125487289 -71708143 + L1Md_T LINE L1 5587 6582 0 8 1542 235 299 26 0 chr1 125487477 125487554 -71707878 + C-rich Low_complexity Low_complexity 5 83 0 8 1542 304 371 39 32 chr1 125487554 125487710 -71707722 - HAL1-3A_ME LINE L1 -419 2439 2283 8 1542 227 362 7 14 chr1 125487711 125487854 -71707578 + CT-rich Low_complexity Low_complexity 2 143 0 8 1542 436 287 15 23 chr1 125488013 125488145 -71707287 - B1_Mus2 SINE Alu 0 147 17 8 1542 592 332 62 46 chr1 125488546 125488852 -71706580 - MT2A LTR ERVL -15 518 208 8 1542 28 29 0 0 chr1 125489043 125489078 -71706354 + AT_rich Low_complexity Low_complexity 1 35 0 8 1542 596 287 22 53 chr1 125490289 125490517 -71704915 + ID_B1 SINE B4 2 222 -2 8 1542 237 97 31 31 chr1 125490517 125490581 -71704851 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 8 1542 1021 110 7 0 chr1 125490647 125490792 -71704640 - B1_Mus1 SINE Alu -1 147 2 9 1542 30 0 0 0 chr1 125490886 125490916 -71704516 + AT_rich Low_complexity Low_complexity 1 30 0 9 1542 1225 66 0 0 chr1 125491260 125491427 -71704005 - L1Md_T LINE L1 0 6582 6416 9 1542 4049 11 0 0 chr1 125491427 125491881 -71703551 - L1Md_T LINE L1 -326 6256 5803 9 1542 4034 15 0 0 chr1 125491874 125492333 -71703099 + L1Md_T LINE L1 5327 5785 -98 9 1542 625 335 19 0 chr1 125492828 125492989 -71702443 - RSINE1 SINE B4 0 165 2 9 1542 440 333 27 75 chr1 125493259 125493447 -71701985 + B4A SINE B4 114 292 0 9 1542 22 0 0 0 chr1 125493984 125494006 -71701426 + AT_rich Low_complexity Low_complexity 1 22 0 9 1542 21 0 0 0 chr1 125494067 125494088 -71701344 + AT_rich Low_complexity Low_complexity 1 21 0 9 1542 325 276 22 22 chr1 125494496 125494585 -71700847 - ID_B1 SINE B4 0 224 136 9 1542 299 272 39 10 chr1 125495110 125495214 -71700218 + CT-rich Low_complexity Low_complexity 5 111 0 9 1542 6040 138 19 10 chr1 125495219 125496828 -71698604 + Lx LINE L1 4879 6498 -156 9 1542 5043 37 0 0 chr1 125496851 125497452 -71697980 - L1Md_T LINE L1 0 6582 5982 9 1542 1030 89 11 29 chr1 125497447 125497621 -71697811 + Lx LINE L1 6482 6652 -2 9 1542 216 219 16 31 chr1 125497841 125497968 -71697464 + CT-rich Low_complexity Low_complexity 3 127 0 9 1542 596 309 54 27 chr1 125498757 125498943 -71696489 - B3A SINE B2 -5 193 3 9 1542 741 33 0 0 chr1 125499351 125499443 -71695989 + (TG)n Simple_repeat Simple_repeat 2 93 0 9 1542 249 232 102 40 chr1 125499619 125499726 -71695706 - B2_Mm2 SINE B2 -103 113 5 9 1542 342 0 0 0 chr1 125500398 125500436 -71694996 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1542 944 250 10 0 chr1 125500451 125500655 -71694777 + B3 SINE B2 3 208 -8 2 1542 426 286 64 87 chr1 125500855 125501073 -71694359 - B3 SINE B2 -1 215 3 3 1542 578 256 111 109 chr1 125501236 125501613 -71693819 - MTE2a LTR MaLR 0 379 2 4 1542 405 280 173 5 chr1 125501616 125501824 -71693608 + MLT1B LTR MaLR 58 300 -90 5 1542 696 212 60 6 chr1 125501831 125501997 -71693435 - URR1A DNA MER1_type -6 220 46 6 1542 314 264 135 65 chr1 125501997 125502046 -71693386 + CYRA11_Mm Unknown Y-chromosome 177 406 -211 7 1542 248 325 16 88 chr1 125502978 125503103 -71692329 - MLT1E2 LTR MaLR -168 459 344 8 1542 340 251 152 114 chr1 125503868 125503907 -71691525 + RMER15 LTR ERVL 296 330 -245 9 1542 207 0 0 0 chr1 125503907 125503930 -71691502 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1542 340 251 152 114 chr1 125503930 125504101 -71691331 + RMER15 LTR ERVL 331 514 -61 9 1542 446 185 106 21 chr1 125504780 125504874 -71690558 + ID_B1 SINE B4 115 216 -8 1 1542 24 77 0 0 chr1 125504902 125504954 -71690478 + AT_rich Low_complexity Low_complexity 1 52 0 1 1542 237 33 0 0 chr1 125504999 125505029 -71690403 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1 1542 396 0 0 0 chr1 125505055 125505099 -71690333 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1542 1848 323 64 31 chr1 125506180 125506475 -71688957 + Lx7 LINE L1 6419 6750 -946 1 1542 207 0 0 0 chr1 125506475 125506498 -71688934 + (TAG)n Simple_repeat Simple_repeat 1 23 0 1 1542 1848 323 64 31 chr1 125506498 125507096 -71688336 + Lx7 LINE L1 6751 7343 -353 1 1542 365 81 0 16 chr1 125507096 125507159 -71688273 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1542 348 111 0 0 chr1 125507622 125507676 -71687756 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1542 225 0 0 0 chr1 125509008 125509033 -71686399 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1542 189 0 0 0 chr1 125509033 125509053 -71686379 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1542 222 37 0 0 chr1 125509170 125509197 -71686235 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 1542 650 266 134 23 chr1 125509253 125509515 -71685917 + Lx8 LINE L1 7181 7471 -2 2 1542 414 256 12 0 chr1 125510123 125510209 -71685223 + B4A SINE B4 110 196 -96 2 1542 505 303 203 75 chr1 125510217 125510669 -71684763 + RLTR12B LTR ERVK 5 514 -14 2 1542 232 234 0 0 chr1 125511889 125511936 -71683496 + MTEa LTR MaLR 199 245 -134 2 1542 260 292 31 0 chr1 125511936 125512001 -71683431 + MTEa LTR MaLR 197 263 -116 2 1542 1386 279 27 22 chr1 125512016 125512426 -71683006 - MTD LTR MaLR -5 414 3 2 1542 553 255 48 39 chr1 125512431 125512639 -71682793 - MTD-int LTR MaLR 0 1258 1049 2 1542 414 192 96 44 chr1 125512663 125512799 -71682633 - MTD-int LTR MaLR -150 1108 966 2 1542 376 240 69 20 chr1 125512807 125512903 -71682529 + MTEa LTR MaLR 261 362 -17 2 1542 1223 253 40 38 chr1 125512903 125513273 -71682159 + ORR1D1 LTR MaLR 1 371 -3 2 1542 376 242 68 457 chr1 125513273 125513294 -71682138 + MTEa LTR MaLR 359 375 -4 2 1542 507 45 0 0 chr1 125514131 125514197 -71681235 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1542 757 340 102 4 chr1 125514202 125514456 -71680976 - B4 SINE B4 -6 286 8 2 1542 1280 223 120 43 chr1 125514701 125515008 -71680424 + RMER6C LTR ERVK 3 334 -356 3 1542 273 57 0 0 chr1 125515008 125515043 -71680389 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1542 1280 223 120 43 chr1 125515043 125515251 -71680181 + RMER6C LTR ERVK 335 558 -132 3 1542 524 89 0 12 chr1 125515371 125515451 -71679981 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 3 1542 1210 286 53 8 chr1 125515488 125515848 -71679584 + MTEa LTR MaLR 3 378 -1 3 1542 389 299 73 21 chr1 125516252 125516361 -71679071 + PB1D9 SINE Alu 1 116 -34 3 1542 261 0 0 0 chr1 125516386 125516415 -71679017 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1542 375 338 41 102 chr1 125516567 125516811 -71678621 + B4 SINE B4 11 239 -53 3 1542 1461 309 57 0 chr1 125517413 125517944 -71677488 + Lx8 LINE L1 6634 7194 -279 3 1542 237 347 13 13 chr1 125518174 125518250 -71677182 + PB1D10 SINE Alu 10 85 -32 3 1542 26 30 0 0 chr1 125518255 125518288 -71677144 + AT_rich Low_complexity Low_complexity 1 33 0 3 1542 471 274 70 64 chr1 125518330 125518486 -71676946 + RSINE1 SINE B4 3 159 -6 4 1542 303 319 54 47 chr1 125518922 125519070 -71676362 + HAL1-3A_ME LINE L1 2289 2437 -421 4 1542 339 25 0 0 chr1 125519072 125519112 -71676320 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1542 263 257 14 14 chr1 125519395 125519466 -71675966 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1542 943 27 0 0 chr1 125519554 125519665 -71675767 - L1Md_T LINE L1 -645 5937 5827 4 1542 5459 37 1 0 chr1 125519665 125520316 -71675116 + L1Md_T LINE L1 5931 6582 0 4 1542 988 122 0 33 chr1 125521438 125521590 -71673842 + B1_Mus1 SINE Alu 1 147 -1 4 1542 243 310 23 0 chr1 125523592 125523679 -71671753 - BC1_Mm scRNA scRNA -61 91 3 4 1542 186 208 0 0 chr1 125523693 125523741 -71671691 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 4 1542 483 229 165 39 chr1 125523886 125524068 -71671364 - B3 SINE B2 -8 208 4 4 1542 307 323 15 30 chr1 125524079 125524213 -71671219 - ID_B1 SINE B4 -6 218 87 4 1542 441 0 0 0 chr1 125524752 125524801 -71670631 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1542 423 0 0 0 chr1 125524801 125524847 -71670585 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1542 1188 48 0 0 chr1 125525459 125525606 -71669826 + B1_Mm SINE Alu 1 147 0 5 1542 458 336 17 33 chr1 125525767 125526007 -71669425 + Lx8 LINE L1 6981 7216 -257 5 1542 450 0 0 0 chr1 125526638 125526688 -71668744 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1542 695 71 0 10 chr1 125526688 125526787 -71668645 + (GAA)n Simple_repeat Simple_repeat 3 100 0 5 1542 353 156 13 0 chr1 125526787 125526864 -71668568 + GA-rich Low_complexity Low_complexity 2 79 0 5 1542 718 41 10 10 chr1 125526867 125526966 -71668466 + (GAGAA)n Simple_repeat Simple_repeat 3 101 0 5 1542 557 253 6 99 chr1 125527321 125527492 -71667940 - RSINE1 SINE B4 0 165 11 5 1542 636 234 0 0 chr1 125528163 125528330 -71667102 + (TA)n Simple_repeat Simple_repeat 1 167 0 5 1542 504 285 0 30 chr1 125528751 125528885 -71666547 - RSINE1 SINE B4 -33 132 3 6 1542 284 245 51 41 chr1 125529235 125529333 -71666099 - MTE2b LTR MaLR -280 99 1 6 1542 282 56 0 0 chr1 125530259 125530295 -71665137 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1542 526 336 48 0 chr1 125530816 125530962 -71664470 + RSINE1 SINE B4 11 163 -2 6 1542 569 299 102 0 chr1 125531190 125531347 -71664085 + B3A SINE B2 1 173 -25 6 1542 240 35 0 0 chr1 125531365 125531394 -71664038 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1542 325 366 24 16 chr1 125531922 125532047 -71663385 + B4 SINE B4 163 288 -4 6 1542 612 62 0 0 chr1 125532077 125532158 -71663274 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1542 387 0 0 0 chr1 125533503 125533546 -71661886 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1542 408 111 0 0 chr1 125533546 125533617 -71661815 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1542 600 285 26 46 chr1 125533623 125533774 -71661658 - B3 SINE B2 -66 150 3 7 1542 2724 105 68 2 chr1 125533981 125534393 -71661039 - Lx LINE L1 -7 6647 6209 7 1542 603 289 24 44 chr1 125535660 125535866 -71659566 + RMER5 LTR ERV1 34 235 -299 7 1542 21 0 0 0 chr1 125536311 125536332 -71659100 + AT_rich Low_complexity Low_complexity 1 21 0 7 1542 618 14 0 0 chr1 125536332 125536403 -71659029 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1542 369 62 0 0 chr1 125536403 125536450 -71658982 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1542 627 284 17 30 chr1 125536691 125536899 -71658533 + B3A SINE B2 8 211 -5 7 1542 540 313 80 54 chr1 125537437 125537751 -71657681 + MLT1F LTR MaLR 53 374 -174 7 1542 978 331 0 11 chr1 125538094 125538369 -71657063 + B4A SINE B4 10 281 -11 7 1542 206 247 26 52 chr1 125538379 125538391 -71657041 + (CATA)n Simple_repeat Simple_repeat 4 14 0 7 1542 426 79 0 0 chr1 125538391 125538454 -71656978 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1542 405 0 0 0 chr1 125538454 125538498 -71656934 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1542 206 247 26 52 chr1 125538498 125538561 -71656871 + (CATA)n Simple_repeat Simple_repeat 3 65 0 8 1542 569 308 0 0 chr1 125538727 125538870 -71656562 + RSINE1 SINE B4 4 146 -19 8 1542 31 26 0 0 chr1 125538892 125538930 -71656502 + AT_rich Low_complexity Low_complexity 1 38 0 8 1542 595 286 79 50 chr1 125539289 125539569 -71655863 - B4A SINE B4 0 292 5 8 1542 327 49 0 0 chr1 125539983 125540024 -71655408 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1542 259 286 0 0 chr1 125540185 125540241 -71655191 + RSINE1 SINE B4 4 59 -106 8 1542 23 68 0 0 chr1 125540382 125540426 -71655006 + AT_rich Low_complexity Low_complexity 1 44 0 8 1542 427 338 32 70 chr1 125541248 125541404 -71654028 - RSINE1 SINE B4 -5 160 11 8 1542 282 279 197 26 chr1 125541543 125541771 -71653661 + RLTR19C LTR ERVK 240 506 0 9 1542 315 185 0 0 chr1 125541902 125541994 -71653438 + GA-rich Low_complexity Low_complexity 1 92 0 9 1542 953 222 5 0 chr1 125541994 125542188 -71653244 - ORR1C2 LTR MaLR -189 195 1 9 1542 24 0 0 0 chr1 125542492 125542516 -71652916 + AT_rich Low_complexity Low_complexity 1 24 0 9 1542 506 314 45 0 chr1 125542656 125542812 -71652620 + RSINE1 SINE B4 3 165 0 9 1542 472 251 67 27 chr1 125543022 125543247 -71652185 - L1MD1 LINE L1 -275 5967 5734 9 1542 654 284 33 29 chr1 125543255 125543465 -71651967 - ID_B1 SINE B4 -13 211 1 9 1542 888 181 0 30 chr1 125543561 125543726 -71651706 + B2_Mm2 SINE B2 3 162 -33 9 1542 342 98 0 0 chr1 125543728 125543779 -71651653 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 1542 519 312 22 111 chr1 125543779 125543959 -71651473 - RSINE1 SINE B4 0 165 2 9 1542 338 179 0 0 chr1 125543967 125544023 -71651409 - L1MD1 LINE L1 -1200 4946 4891 9 1542 387 0 0 0 chr1 125544432 125544475 -71650957 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1542 2386 120 159 14 chr1 125544490 125544996 -71650436 + L1_Mur1 LINE L1 4736 5335 -545 1 1542 342 302 83 79 chr1 125545667 125545933 -71649499 + B4 SINE B4 4 270 -22 1 1542 696 127 0 0 chr1 125545997 125546107 -71649325 + (TA)n Simple_repeat Simple_repeat 2 111 0 1 1542 227 31 0 30 chr1 125546132 125546165 -71649267 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1542 477 294 6 126 chr1 125546303 125546486 -71648946 + RSINE1 SINE B4 3 163 -2 1 1542 369 349 55 22 chr1 125547172 125547447 -71647985 - Lx8 LINE L1 -85 7388 7105 1 1542 24 0 0 0 chr1 125547476 125547500 -71647932 + AT_rich Low_complexity Low_complexity 1 24 0 1 1542 241 234 0 0 chr1 125547668 125547715 -71647717 + ID_B1 SINE B4 116 162 -62 1 1542 3801 83 2 0 chr1 125547790 125548298 -71647134 - L1Md_T LINE L1 0 6582 6074 1 1542 8487 16 0 0 chr1 125548298 125549466 -71645966 + L1Md_T LINE L1 4915 6082 -500 1 1542 236 175 0 0 chr1 125549507 125549547 -71645885 + ID_B1 SINE B4 185 224 0 1 1542 286 351 60 26 chr1 125549560 125549677 -71645755 + B1F SINE Alu 3 123 -26 1 1542 459 52 0 0 chr1 125552347 125552405 -71643027 + (TTA)n Simple_repeat Simple_repeat 3 60 0 1 1542 2085 98 23 113 chr1 125552406 125552796 -71642636 - L1_Mus2 LINE L1 -15 6551 6197 1 1542 282 116 0 0 chr1 125553128 125553171 -71642261 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1 1542 349 352 56 28 chr1 125553515 125553788 -71641644 + B4A SINE B4 2 292 0 1 1542 934 201 81 5 chr1 125553870 125554080 -71641352 + URR1A DNA MER1_type 1 226 0 1 1542 397 304 109 15 chr1 125554234 125554371 -71641061 + B3A SINE B2 1 150 -48 1 1542 620 280 146 41 chr1 125554502 125554748 -71640684 - B4 SINE B4 -16 276 5 1 1542 1080 100 0 0 chr1 125555290 125555450 -71639982 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 1542 602 169 7 0 chr1 125556191 125556333 -71639099 + (TG)n Simple_repeat Simple_repeat 2 144 0 1 1542 333 305 123 19 chr1 125556334 125556595 -71638837 - B4 SINE B4 0 292 5 1 1542 1010 147 0 17 chr1 125557057 125557230 -71638202 - B2_Mm1t SINE B2 -2 191 22 1 1542 976 68 8 0 chr1 125557211 125557344 -71638088 + B1_Mus1 SINE Alu 15 148 0 1 1542 477 319 78 6 chr1 125557357 125557524 -71637908 + B3A SINE B2 4 182 -16 1 1542 21 82 0 0 chr1 125558150 125558199 -71637233 + AT_rich Low_complexity Low_complexity 1 49 0 1 1542 280 337 11 0 chr1 125558230 125558325 -71637107 - Lx8 LINE L1 -200 7273 7178 1 1542 456 19 0 0 chr1 125558334 125558387 -71637045 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1542 540 0 0 0 chr1 125558856 125558916 -71636516 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1542 266 331 125 88 chr1 125558926 125559118 -71636314 - B4 SINE B4 -13 279 81 1 1542 4463 43 0 0 chr1 125559122 125559658 -71635774 - L1Md_T LINE L1 0 6582 6047 1 1542 222 175 35 0 chr1 125560255 125560312 -71635120 + T-rich Low_complexity Low_complexity 2 60 0 1 1542 339 344 41 41 chr1 125560319 125560489 -71634943 + B4A SINE B4 120 289 -3 1 1542 243 140 0 0 chr1 125560508 125560558 -71634874 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1542 4247 156 8 6 chr1 125561087 125562086 -71633346 - Lx2 LINE L1 -866 6131 5129 1 1542 4116 173 4 14 chr1 125562075 125562797 -71632635 + Lx2 LINE L1 6137 6851 -146 1 1542 434 258 21 0 chr1 125562797 125562890 -71632542 - B3A SINE B2 -102 96 2 1 1542 227 290 32 0 chr1 125563415 125563477 -71631955 + ID4 SINE ID 3 66 -17 1 1542 720 228 0 27 chr1 125563730 125563879 -71631553 - MTD LTR MaLR -6 413 269 1 1542 779 325 16 24 chr1 125563932 125564184 -71631248 - MTD LTR MaLR -149 270 21 1 1542 207 0 0 0 chr1 125564206 125564229 -71631203 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1 1542 306 50 0 0 chr1 125564229 125564269 -71631163 + (CTA)n Simple_repeat Simple_repeat 1 40 0 1 1542 260 263 80 70 chr1 125564490 125564703 -71630729 + L1M4b LINE L1 1949 2163 -5171 1 1542 310 255 108 39 chr1 125565091 125565193 -71630239 + B1F SINE Alu 29 137 -12 1 1542 746 207 7 0 chr1 125565491 125565626 -71629806 + B1_Mus1 SINE Alu 8 143 -5 1 1542 1395 28 0 16 chr1 125565628 125565811 -71629621 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1542 610 193 0 15 chr1 125565821 125566027 -71629405 + GA-rich Low_complexity Low_complexity 1 202 0 1 1542 356 164 0 0 chr1 125565974 125566029 -71629403 + polypurine Low_complexity Low_complexity 4 58 0 1 1542 871 289 116 15 chr1 125566164 125566511 -71628921 + Lx8 LINE L1 6973 7350 -123 1 1542 250 314 85 6 chr1 125566772 125566948 -71628484 + L1M4b LINE L1 5677 5866 -1140 1 1543 805 270 78 5 chr1 125567046 125567251 -71628181 - ID_B1 SINE B4 -4 220 1 1 1543 624 253 97 21 chr1 125567339 125567525 -71627907 + B3 SINE B2 5 204 -12 1 1543 303 306 10 0 chr1 125567573 125567671 -71627761 + L1M4b LINE L1 6125 6223 -783 1 1543 466 289 163 2 chr1 125567991 125568298 -71627134 + ORR1D2 LTR MaLR 8 376 -3 1 1543 536 331 55 48 chr1 125568306 125568579 -71626853 + Tigger7 DNA MER2_type 292 566 -1925 1 1543 195 69 0 0 chr1 125568866 125568895 -71626537 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 1543 355 217 38 0 chr1 125568936 125569042 -71626390 + (CAGA)n Simple_repeat Simple_repeat 3 112 0 1 1543 525 58 0 0 chr1 125569283 125569352 -71626080 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1 1543 275 136 17 0 chr1 125569415 125569474 -71625958 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1543 21 89 0 0 chr1 125569474 125569530 -71625902 + AT_rich Low_complexity Low_complexity 1 56 0 1 1543 417 269 11 0 chr1 125569616 125569709 -71625723 + B3 SINE B2 7 100 -116 1 1543 1281 55 0 0 chr1 125569745 125569963 -71625469 + (CA)n Simple_repeat Simple_repeat 1 218 0 1 1543 31 68 0 0 chr1 125570038 125570097 -71625335 + AT_rich Low_complexity Low_complexity 1 59 0 1 1543 194 128 0 25 chr1 125570182 125570222 -71625210 + T-rich Low_complexity Low_complexity 2 40 0 1 1543 3071 142 22 7 chr1 125570783 125571324 -71624108 - Lx2A1 LINE L1 0 7008 6460 1 1543 22 80 0 0 chr1 125571736 125571786 -71623646 + AT_rich Low_complexity Low_complexity 1 50 0 1 1543 378 351 9 0 chr1 125571787 125571901 -71623531 - PB1D7 SINE Alu -1 119 5 1 1543 494 254 105 18 chr1 125571955 125572183 -71623249 - L1MA7 LINE L1 -33 6258 6011 1 1543 609 258 32 48 chr1 125573130 125573317 -71622115 - B3A SINE B2 -14 184 1 1 1543 628 258 64 6 chr1 125573984 125574140 -71621292 + B3A SINE B2 34 198 0 1 1543 243 250 73 46 chr1 125575077 125575186 -71620246 - MER45B DNA Tip100 -330 710 599 1 1543 8458 77 10 5 chr1 125575202 125577068 -71618364 - L1Md_F2 LINE L1 -12 6570 4691 1 1543 10354 86 8 24 chr1 125577062 125578575 -71616857 + L1Md_F2 LINE L1 3193 4681 -1202 1 1543 490 225 40 40 chr1 125578949 125579074 -71616358 - RSINE1 SINE B4 -2 163 39 1 1543 369 0 0 0 chr1 125579097 125579138 -71616294 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1543 656 12 12 0 chr1 125579225 125579306 -71616126 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1 1543 734 309 21 16 chr1 125579309 125579500 -71615932 - B3 SINE B2 -16 200 9 1 1543 315 305 169 7 chr1 125579513 125579655 -71615777 - MTD LTR MaLR -254 165 1 1 1543 295 268 107 14 chr1 125579728 125579944 -71615488 + L1_Mur3 LINE L1 3519 3754 -2126 1 1543 684 305 40 28 chr1 125579952 125580205 -71615227 + MTD LTR MaLR 15 270 -149 1 1543 350 263 50 43 chr1 125580228 125580376 -71615056 + MTD LTR MaLR 247 389 -30 1 1543 234 0 0 0 chr1 125580399 125580425 -71615007 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1543 745 340 59 6 chr1 125580460 125580937 -71614495 + L1_Mur3 LINE L1 3753 4254 -1626 1 1543 1018 279 39 16 chr1 125580938 125581193 -71614239 + B4A SINE B4 8 268 -24 1 1543 704 103 9 0 chr1 125581194 125581310 -71614122 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1543 264 130 0 0 chr1 125581314 125581360 -71614072 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1543 441 0 0 0 chr1 125581374 125581423 -71614009 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 1543 511 316 73 24 chr1 125581459 125581910 -71613522 + L1M2 LINE L1 4490 4962 -1181 1 1543 6225 3 0 0 chr1 125581949 125582638 -71612794 + L1Md_A LINE L1 5894 6582 0 1 1543 831 160 52 17 chr1 125583473 125583645 -71611787 - B2_Mm2 SINE B2 -4 191 14 1 1543 7912 81 4 2 chr1 125583645 125584816 -71610616 + L1_Mus3 LINE L1 5466 6638 0 1 1543 227 355 11 11 chr1 125584866 125584960 -71610472 + MTD LTR MaLR 3 96 -323 1 1543 283 98 58 19 chr1 125585621 125585673 -71609759 - U2 snRNA snRNA -134 54 1 1 1543 828 77 0 0 chr1 125585682 125585799 -71609633 + (TTC)n Simple_repeat Simple_repeat 2 118 0 1 1543 642 41 204 0 chr1 125585799 125585897 -71609535 - B1_Mus1 SINE Alu -2 146 29 1 1543 1079 119 6 0 chr1 125586801 125586977 -71608455 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1 1543 779 101 0 8 chr1 125586977 125587097 -71608335 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 1 1543 482 294 25 0 chr1 125587137 125587256 -71608176 + B3 SINE B2 1 122 -94 1 1543 426 276 135 18 chr1 125587611 125587927 -71607505 + MTEb LTR MaLR 1 379 0 1 1543 1278 302 136 65 chr1 125587927 125589285 -71606147 + MTEb-int LTR MaLR 1 1580 0 1 1543 911 284 35 36 chr1 125589285 125589602 -71605830 + MTEb LTR MaLR 1 374 -5 1 1543 1038 130 0 0 chr1 125590351 125590547 -71604885 - L1_Mus1 LINE L1 0 6567 6397 1 1543 520 312 0 0 chr1 125591332 125591460 -71603972 + ORR1E LTR MaLR 1 128 -231 1 1543 267 345 67 13 chr1 125591504 125591654 -71603778 - L1M3e LINE L1 -6732 298 141 1 1543 420 317 40 128 chr1 125591844 125592136 -71603296 + RMER5 LTR ERV1 51 316 -218 1 1543 359 338 75 13 chr1 125592136 125592295 -71603137 + MTC LTR MaLR 1 169 -252 1 1543 21 36 0 0 chr1 125592474 125592502 -71602930 + AT_rich Low_complexity Low_complexity 1 28 0 1 1543 239 0 0 31 chr1 125592796 125592828 -71602604 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 1 1543 1151 45 45 6 chr1 125593044 125593201 -71602231 - L1Md_F2 LINE L1 -523 6059 5897 1 1543 1044 100 18 6 chr1 125593202 125593373 -71602059 + L1Md_F2 LINE L1 6398 6570 -12 1 1543 25 31 0 0 chr1 125593453 125593485 -71601947 + AT_rich Low_complexity Low_complexity 1 32 0 2 1543 602 297 34 158 chr1 125593560 125594004 -71601428 - RMER20B LTR ERVK -235 392 4 2 1543 507 276 57 0 chr1 125594203 125594326 -71601106 + RSINE1 SINE B4 3 132 -33 2 1543 474 33 0 0 chr1 125594340 125594400 -71601032 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1543 431 73 15 0 chr1 125594405 125594473 -71600959 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1543 605 309 66 20 chr1 125594576 125594774 -71600658 - B3 SINE B2 -6 210 4 2 1543 484 345 89 35 chr1 125595384 125595642 -71599790 - B4A SINE B4 -20 272 1 2 1543 226 284 30 0 chr1 125595887 125595954 -71599478 + ID4 SINE ID 1 69 -14 2 1543 617 318 123 8 chr1 125596089 125596333 -71599099 + B4A SINE B4 8 279 -13 2 1543 505 329 135 29 chr1 125596924 125597168 -71598264 + B4A SINE B4 1 270 -22 2 1543 370 286 66 101 chr1 125597971 125598169 -71597263 - MTE2a LTR MaLR -1 378 188 2 1543 39 68 0 0 chr1 125598834 125598908 -71596524 + AT_rich Low_complexity Low_complexity 1 74 0 2 1543 449 323 24 0 chr1 125598946 125599070 -71596362 - RSINE1 SINE B4 -35 130 4 2 1543 471 305 175 11 chr1 125599726 125599915 -71595517 - B4A SINE B4 -3 289 70 2 1543 526 308 75 0 chr1 125600976 125601122 -71594310 - B4A SINE B4 -124 168 12 2 1543 604 133 27 40 chr1 125601237 125601386 -71594046 + L1_Mus3 LINE L1 6492 6638 0 2 1543 204 158 0 0 chr1 125601487 125601525 -71593907 + T-rich Low_complexity Low_complexity 1 38 0 2 1543 1540 31 0 20 chr1 125601548 125601744 -71593688 - L1Md_F3 LINE L1 -15 6569 6378 2 1543 2813 44 0 0 chr1 125601744 125602086 -71593346 + L1_Mm LINE L1 5214 5555 -328 2 1543 1650 161 59 47 chr1 125602102 125602507 -71592925 + RMER17C LTR ERVK 1 410 0 2 1543 294 329 0 12 chr1 125603044 125603130 -71592302 - B2_Mm2 SINE B2 -110 85 1 2 1543 281 315 58 7 chr1 125603254 125603404 -71592028 - B2_Mm2 SINE B2 -29 164 1 2 1543 1273 268 68 30 chr1 125603863 125604290 -71591142 - Lx8 LINE L1 -2 7471 7029 2 1543 302 289 43 68 chr1 125604289 125604635 -71590797 - L1M4c LINE L1 -1404 4978 4646 2 1543 486 351 117 14 chr1 125604640 125604854 -71590578 + B4A SINE B4 2 237 -55 2 1543 248 306 69 16 chr1 125605002 125605248 -71590184 - L1M4c LINE L1 -1731 4645 4387 2 1543 589 317 74 4 chr1 125606287 125606531 -71588901 - L1M4c LINE L1 -6108 276 16 2 1543 233 180 0 74 chr1 125607077 125607131 -71588301 - B3A SINE B2 -148 50 1 2 1543 26 0 0 0 chr1 125607551 125607577 -71587855 + AT_rich Low_complexity Low_complexity 1 26 0 2 1543 535 279 22 83 chr1 125607971 125608151 -71587281 - B3A SINE B2 -27 171 3 2 1543 660 87 0 0 chr1 125609082 125609174 -71586258 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1543 7980 52 8 3 chr1 125609175 125610490 -71584942 - L1Md_F2 LINE L1 -14 6568 5266 2 1543 5534 133 35 14 chr1 125610519 125612314 -71583118 + L1_Mus1 LINE L1 4715 6581 -1 2 1543 6140 161 76 11 chr1 125612313 125612934 -71582498 + Lx2B LINE L1 5739 6382 -618 2 1543 5104 59 8 0 chr1 125612934 125613577 -71581855 + L1Md_F2 LINE L1 5935 6582 0 2 1543 6140 161 76 11 chr1 125613577 125614133 -71581299 + Lx2B LINE L1 6383 6991 -9 2 1543 300 243 40 13 chr1 125614772 125614847 -71580585 + ID4_ SINE ID 1 77 -6 2 1543 23 0 0 0 chr1 125614858 125614881 -71580551 + AT_rich Low_complexity Low_complexity 1 23 0 2 1543 21 0 0 0 chr1 125615067 125615088 -71580344 + AT_rich Low_complexity Low_complexity 1 21 0 2 1543 261 0 0 0 chr1 125615166 125615195 -71580237 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1543 333 299 0 53 chr1 125615606 125615719 -71579713 - PB1D10 SINE Alu -2 115 9 2 1543 510 268 62 27 chr1 125615626 125615772 -71579660 - ID_B1 SINE B4 -42 182 32 2 1543 264 220 34 0 chr1 125616079 125616138 -71579294 + B3A SINE B2 20 80 -118 2 1543 626 302 164 22 chr1 125616407 125616719 -71578713 + ORR1E LTR MaLR 4 359 0 2 1543 429 338 18 54 chr1 125616813 125616979 -71578453 + RSINE1 SINE B4 4 163 -2 2 1543 4760 88 16 13 chr1 125617268 125617949 -71577483 - L1Md_F2 LINE L1 -648 5235 4553 2 1543 2468 65 6 6 chr1 125617936 125618262 -71577170 + L1Md_F2 LINE L1 5260 5585 -298 2 1543 6996 86 6 17 chr1 125618264 125619257 -71576175 + L1Md_F2 LINE L1 5588 6569 -13 2 1543 414 264 0 26 chr1 125619607 125619720 -71575712 + MTEa LTR MaLR 1 110 -269 2 1543 928 319 6 50 chr1 125619707 125620027 -71575405 + MTEa LTR MaLR 67 372 -7 2 1543 560 338 55 58 chr1 125620675 125620967 -71574465 + B4A SINE B4 2 292 0 2 1543 329 159 47 16 chr1 125620984 125621048 -71574384 + HAL1-3A_ME LINE L1 1975 2040 -818 2 1543 238 205 12 12 chr1 125621614 125621698 -71573734 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1543 226 349 77 26 chr1 125621716 125621872 -71573560 - RSINE1 SINE B4 0 165 2 2 1543 789 295 58 61 chr1 125622007 125622383 -71573049 + MTE2a LTR MaLR 5 379 0 2 1543 410 329 31 25 chr1 125622973 125623132 -71572300 - RSINE1 SINE B4 -2 163 4 2 1543 21 0 0 0 chr1 125623132 125623153 -71572279 + AT_rich Low_complexity Low_complexity 1 21 0 2 1543 1328 161 165 24 chr1 125623164 125623588 -71571844 - Lx2 LINE L1 0 6997 6775 2 1543 341 336 61 0 chr1 125623623 125623754 -71571678 + RMER1A Other Other 149 287 -743 2 1543 4041 206 66 39 chr1 125623817 125624681 -71570751 + RMER1A Other Other 22 908 -122 2 1543 189 0 0 0 chr1 125624681 125624702 -71570730 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1543 315 0 0 0 chr1 125624702 125624736 -71570696 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1543 4041 206 66 39 chr1 125624736 125624852 -71570580 + RMER1A Other Other 909 1029 -1 2 1543 355 363 55 43 chr1 125625114 125625370 -71570062 + MER115 DNA Tip100 353 611 -82 2 1543 303 71 0 0 chr1 125625403 125625445 -71569987 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1543 741 318 16 71 chr1 125625466 125625774 -71569658 - B4 SINE B4 0 292 2 2 1543 559 246 61 71 chr1 125626463 125626660 -71568772 - B3A SINE B2 0 198 4 2 1543 590 289 74 33 chr1 125626927 125627128 -71568304 + B3A SINE B2 3 198 0 2 1543 225 0 0 0 chr1 125627402 125627427 -71568005 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1543 601 230 8 8 chr1 125627427 125627693 -71567739 + GA-rich Low_complexity Low_complexity 1 266 0 2 1543 230 133 44 0 chr1 125627569 125627614 -71567818 + (CAGA)n Simple_repeat Simple_repeat 1 47 0 2 1543 252 301 86 25 chr1 125627861 125628106 -71567326 - L1MA9 LINE L1 -4 6308 6049 2 1543 534 291 33 26 chr1 125628211 125628363 -71567069 + RSINE1 SINE B4 13 165 0 2 1543 239 0 0 31 chr1 125628521 125628553 -71566879 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1543 1193 213 192 40 chr1 125628970 125629340 -71566092 + MTD LTR MaLR 1 382 -37 2 1543 22 0 0 0 chr1 125629443 125629465 -71565967 + AT_rich Low_complexity Low_complexity 1 22 0 2 1543 217 301 14 0 chr1 125629620 125629693 -71565739 + (TATG)n Simple_repeat Simple_repeat 1 74 0 2 1543 220 350 94 0 chr1 125629760 125629877 -71565555 - B4A SINE B4 -161 131 4 2 1543 24 32 0 0 chr1 125631064 125631095 -71564337 + AT_rich Low_complexity Low_complexity 1 31 0 2 1543 195 114 0 0 chr1 125631102 125631137 -71564295 + (TATAG)n Simple_repeat Simple_repeat 5 39 0 2 1543 455 298 0 9 chr1 125631500 125631615 -71563817 + MTE2b LTR MaLR 8 121 -258 2 1543 2687 221 30 31 chr1 125631630 125632269 -71563163 + RLTR26 LTR ERVK 5 642 0 2 1543 634 251 30 110 chr1 125632279 125632516 -71562916 + MTE2b LTR MaLR 147 364 -15 2 1543 465 115 0 0 chr1 125632905 125632983 -71562449 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1543 202 200 0 0 chr1 125633046 125633086 -71562346 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1543 21 36 0 0 chr1 125633219 125633247 -71562185 + AT_rich Low_complexity Low_complexity 1 28 0 2 1543 309 89 0 0 chr1 125633336 125633381 -71562051 + (TCTCCC)n Simple_repeat Simple_repeat 5 49 0 2 1543 222 37 0 0 chr1 125633395 125633422 -71562010 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1543 1088 304 11 0 chr1 125633427 125633700 -71561732 - B4A SINE B4 -16 276 1 2 1543 486 139 36 18 chr1 125633919 125634087 -71561345 + (TA)n Simple_repeat Simple_repeat 1 171 0 2 1543 394 344 74 26 chr1 125634393 125634623 -71560809 + MTEa LTR MaLR 10 250 -169 2 1543 3177 222 65 13 chr1 125634614 125635794 -71559638 + ORR1C1-int LTR MaLR 73 1509 0 2 1543 409 233 68 17 chr1 125635801 125635919 -71559513 + ORR1C1 LTR MaLR 3 126 -252 2 1543 330 186 0 0 chr1 125635927 125635986 -71559446 + ORR1C1 LTR MaLR 326 384 0 2 1543 635 207 83 0 chr1 125635994 125636187 -71559245 - Lx9 LINE L1 0 7644 7436 2 1543 318 50 0 0 chr1 125636190 125636230 -71559202 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1543 664 326 100 31 chr1 125636392 125637133 -71558299 - L1M5 LINE L1 -1314 4832 4041 2 1543 358 346 6 36 chr1 125637999 125638167 -71557265 + RSINE1 SINE B4 3 165 0 2 1543 393 75 0 0 chr1 125638172 125638225 -71557207 + (GGGAGA)n Simple_repeat Simple_repeat 3 55 0 2 1543 605 211 137 7 chr1 125638272 125638425 -71557007 + MTEa LTR MaLR 207 379 0 2 1543 851 308 170 13 chr1 125638787 125639093 -71556339 + ORR1E LTR MaLR 4 357 -2 2 1543 27 49 0 0 chr1 125639610 125639651 -71555781 + AT_rich Low_complexity Low_complexity 1 41 0 2 1543 435 237 17 0 chr1 125639929 125640106 -71555326 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1543 229 267 43 51 chr1 125640180 125640318 -71555114 - L1M1 LINE L1 -375 5925 5789 2 1543 552 272 47 5 chr1 125641029 125641243 -71554189 - L1M3 LINE L1 -388 5780 5558 2 1543 262 167 21 0 chr1 125641247 125641295 -71554137 + MTD LTR MaLR 5 53 -366 2 1543 1138 239 18 0 chr1 125641297 125641523 -71553909 + MTD LTR MaLR 190 419 0 2 1543 658 209 71 19 chr1 125642258 125642468 -71552964 - Lx9 LINE L1 -9 7635 7415 2 1543 580 306 37 42 chr1 125642473 125642664 -71552768 - B3A SINE B2 -7 191 2 2 1543 198 103 0 0 chr1 125643181 125643210 -71552222 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 2 1543 1555 244 11 17 chr1 125643431 125643781 -71551651 - ORR1B2 LTR MaLR -7 360 13 2 1543 7997 52 1 4 chr1 125643783 125644852 -71550580 - L1Md_F2 LINE L1 -13 6569 5504 2 1543 796 340 29 49 chr1 125644854 125645200 -71550232 + MTE2a LTR MaLR 41 379 0 3 1543 23 0 0 0 chr1 125645630 125645653 -71549779 + AT_rich Low_complexity Low_complexity 1 23 0 3 1543 225 200 0 52 chr1 125645669 125645727 -71549705 + CT-rich Low_complexity Low_complexity 2 56 0 3 1543 413 292 19 0 chr1 125645728 125645834 -71549598 - B1F1 SINE Alu -6 143 36 3 1543 213 159 0 0 chr1 125645970 125646014 -71549418 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1543 370 245 33 4 chr1 125646197 125646315 -71549117 - PB1D10 SINE Alu 0 120 1 3 1543 398 351 132 15 chr1 125646734 125646939 -71548493 - B4A SINE B4 -62 230 2 3 1543 25 51 0 0 chr1 125647042 125647081 -71548351 + AT_rich Low_complexity Low_complexity 1 39 0 3 1543 354 310 103 35 chr1 125647192 125647366 -71548066 - B3 SINE B2 0 216 31 3 1543 376 419 24 20 chr1 125647731 125647982 -71547450 + B4A SINE B4 6 257 -35 3 1543 287 321 63 56 chr1 125648886 125649028 -71546404 + B4A SINE B4 148 290 -2 3 1543 224 77 26 0 chr1 125649052 125649091 -71546341 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1543 190 271 11 96 chr1 125649166 125649260 -71546172 + L4 LINE RTE 1451 1536 -493 3 1543 198 103 0 0 chr1 125649295 125649324 -71546108 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1543 396 0 0 0 chr1 125649328 125649372 -71546060 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1543 261 175 31 16 chr1 125649413 125649477 -71545955 + LTR48 LTR ERV1 686 750 -37 3 1543 338 204 10 31 chr1 125650150 125650246 -71545186 - L1M3 LINE L1 -692 5479 5386 3 1543 253 268 18 0 chr1 125650306 125650362 -71545070 + B3A SINE B2 63 119 -79 3 1543 343 314 0 23 chr1 125650599 125650687 -71544745 - B3 SINE B2 -130 86 1 3 1543 415 248 85 0 chr1 125651511 125651640 -71543792 + B1F2 SINE Alu 3 142 -7 3 1543 1096 90 0 0 chr1 125651694 125651839 -71543593 - B1_Mm SINE Alu -1 146 2 3 1543 415 226 29 19 chr1 125651956 125652060 -71543372 + ORR1D2 LTR MaLR 266 370 0 3 1543 516 32 0 0 chr1 125654372 125654434 -71540998 + (TAA)n Simple_repeat Simple_repeat 1 62 0 3 1543 245 322 49 41 chr1 125654485 125654608 -71540824 - RSINE1 SINE B4 0 165 42 3 1543 209 167 19 0 chr1 125654633 125654687 -71540745 + CT-rich Low_complexity Low_complexity 1 55 0 3 1543 365 144 11 0 chr1 125654691 125654781 -71540651 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 1543 701 239 109 90 chr1 125654810 125655177 -71540255 - Tigger6a DNA MER2_type -125 958 585 3 1543 238 287 131 65 chr1 125655424 125655577 -71539855 + MLT1A LTR MaLR 158 320 -54 3 1543 246 380 37 11 chr1 125655597 125655786 -71539646 - Tigger6a DNA MER2_type -542 541 348 3 1543 298 359 19 19 chr1 125655810 125655972 -71539460 - RSINE1 SINE B4 0 165 4 3 1543 1105 275 27 84 chr1 125656300 125656542 -71538890 - ORR1E LTR MaLR -7 352 123 3 1543 6654 71 26 0 chr1 125656542 125657412 -71538020 + RLTR13B1 LTR ERVK 1 893 0 3 1543 1105 275 27 84 chr1 125657412 125657538 -71537894 - ORR1E LTR MaLR -237 122 5 3 1543 787 296 71 85 chr1 125657780 125657819 -71537613 + B4 SINE B4 2 35 -257 3 1543 1085 276 28 77 chr1 125657819 125658208 -71537224 + ORR1D2 LTR MaLR 1 370 0 3 1543 787 296 71 85 chr1 125658208 125658463 -71536969 + B4 SINE B4 36 292 0 3 1543 3027 87 9 45 chr1 125658917 125659363 -71536069 - L1_Mus2 LINE L1 -2 6564 6135 3 1543 1668 81 0 7 chr1 125659363 125659602 -71535830 + L1_Mus2 LINE L1 5910 6128 -438 3 1543 250 338 163 24 chr1 125659853 125660099 -71535333 + B4 SINE B4 2 281 -11 3 1543 390 57 0 0 chr1 125660124 125660177 -71535255 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1543 815 261 69 20 chr1 125660248 125660614 -71534818 + MTC LTR MaLR 3 419 0 3 1543 24 85 0 0 chr1 125660733 125660792 -71534640 + AT_rich Low_complexity Low_complexity 1 59 0 3 1543 283 315 43 0 chr1 125660971 125661063 -71534369 - RSINE1 SINE B4 -36 129 34 3 1543 387 0 0 0 chr1 125661160 125661203 -71534229 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1543 645 25 0 0 chr1 125661203 125661282 -71534150 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 3 1543 408 125 0 0 chr1 125661582 125661646 -71533786 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1543 444 99 0 0 chr1 125661646 125661716 -71533716 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1543 585 303 21 21 chr1 125662248 125662437 -71532995 + B3A SINE B2 3 191 -7 3 1543 21 0 0 0 chr1 125662447 125662468 -71532964 + AT_rich Low_complexity Low_complexity 1 21 0 3 1543 21 36 0 0 chr1 125662525 125662553 -71532879 + AT_rich Low_complexity Low_complexity 1 28 0 3 1543 406 300 141 61 chr1 125662877 125663140 -71532292 - B4A SINE B4 -7 285 2 3 1543 234 250 0 18 chr1 125663528 125663585 -71531847 + GA-rich Low_complexity Low_complexity 3 58 0 3 1543 581 267 85 20 chr1 125663654 125663853 -71531579 - B3 SINE B2 0 216 5 3 1543 532 27 27 0 chr1 125663983 125664057 -71531375 + (TTA)n Simple_repeat Simple_repeat 1 76 0 3 1543 381 298 69 59 chr1 125664070 125664273 -71531159 + B3 SINE B2 9 213 -3 3 1543 689 63 0 10 chr1 125664314 125664410 -71531022 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 1543 694 168 6 97 chr1 125664613 125664778 -71530654 - URR1A DNA MER1_type -3 223 74 3 1543 337 275 16 97 chr1 125664778 125664798 -71530634 + CYRA11_Mm Unknown Y-chromosome 174 343 -274 3 1543 408 279 120 54 chr1 125665414 125665581 -71529851 - B3A SINE B2 -16 182 5 3 1543 238 266 190 60 chr1 125665682 125665782 -71529650 + B4A SINE B4 1 113 -179 3 1543 263 28 28 0 chr1 125665790 125665826 -71529606 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1543 400 361 86 41 chr1 125666132 125666375 -71529057 + B4A SINE B4 39 292 0 3 1543 1512 254 20 0 chr1 125666753 125667162 -71528270 - MTD LTR MaLR 0 419 3 3 1543 194 0 39 0 chr1 125667169 125667195 -71528237 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1543 500 333 88 6 chr1 125667488 125667648 -71527784 - B3A SINE B2 -14 184 12 3 1543 21 0 0 0 chr1 125667975 125667996 -71527436 + AT_rich Low_complexity Low_complexity 1 21 0 3 1543 1118 68 7 0 chr1 125668201 125668347 -71527085 - B1_Mm SINE Alu 0 147 1 3 1543 231 114 0 0 chr1 125668879 125668914 -71526518 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 1543 1351 221 20 45 chr1 125668914 125669270 -71526162 + RLTR18-int LTR ERVK 4866 5212 -149 3 1543 869 243 198 119 chr1 125669270 125669700 -71525732 + MT2A LTR ERVL 1 464 -69 3 1543 369 0 0 0 chr1 125669764 125669805 -71525627 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 3 1543 730 192 41 0 chr1 125669875 125670021 -71525411 + RLTR18-int LTR ERVK 5206 5357 -4 3 1543 1015 246 126 100 chr1 125670031 125670392 -71525040 + RLTR18 LTR ERVK 7 380 -236 3 1543 351 0 0 0 chr1 125670392 125670431 -71525001 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1543 1015 246 126 100 chr1 125670431 125670520 -71524912 + RLTR18 LTR ERVK 381 469 -147 3 1543 928 329 46 22 chr1 125670636 125671006 -71524426 + RMER5 LTR ERV1 153 531 -3 3 1543 225 0 0 0 chr1 125671051 125671076 -71524356 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1543 306 0 0 0 chr1 125671076 125671110 -71524322 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1543 416 296 0 0 chr1 125672069 125672177 -71523255 + PB1D7 SINE Alu 13 120 0 3 1543 266 117 12 72 chr1 125672181 125672203 -71523229 + A-rich Low_complexity Low_complexity 2 22 0 3 1543 192 40 0 0 chr1 125672203 125672228 -71523204 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1543 266 117 12 72 chr1 125672228 125672288 -71523144 + A-rich Low_complexity Low_complexity 23 79 0 3 1543 194 0 0 37 chr1 125672616 125672643 -71522789 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 3 1543 34 89 0 0 chr1 125673049 125673139 -71522293 + AT_rich Low_complexity Low_complexity 1 90 0 3 1543 354 171 0 0 chr1 125673443 125673513 -71521919 + CT-rich Low_complexity Low_complexity 2 71 0 3 1543 329 294 71 0 chr1 125673594 125673679 -71521753 - B3A SINE B2 -60 138 48 3 1543 234 0 0 0 chr1 125673838 125673864 -71521568 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 1543 389 323 88 10 chr1 125674014 125674208 -71521224 - Tigger7 DNA MER2_type -1 2490 2282 3 1543 554 275 99 70 chr1 125674656 125674969 -71520463 + Lx8 LINE L1 7141 7462 -11 3 1543 656 276 18 93 chr1 125675261 125675690 -71519742 - MTD LTR MaLR -15 404 19 3 1543 373 349 45 26 chr1 125676093 125676249 -71519183 + B3 SINE B2 49 207 -9 3 1543 1233 153 70 0 chr1 125676386 125676627 -71518805 + RLTR22_Mur LTR ERVK 549 806 -1042 3 1543 267 54 0 0 chr1 125676628 125676665 -71518767 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1543 2142 65 7 7 chr1 125676786 125677082 -71518350 - L1_Mus1 LINE L1 -1 6566 6271 3 1543 206 86 0 54 chr1 125677124 125677161 -71518271 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1543 570 324 40 49 chr1 125677268 125677492 -71517940 + RMER12 LTR ERVK 1101 1322 0 3 1543 250 219 83 70 chr1 125677876 125678033 -71517399 + Lx7 LINE L1 7344 7502 -194 3 1543 225 178 0 0 chr1 125678067 125678112 -71517320 + CT-rich Low_complexity Low_complexity 2 46 0 3 1543 408 20 0 0 chr1 125678164 125678213 -71517219 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1543 1287 84 0 0 chr1 125678216 125678394 -71517038 + (GGA)n Simple_repeat Simple_repeat 3 180 0 3 1543 512 68 14 0 chr1 125678394 125678467 -71516965 + (GAA)n Simple_repeat Simple_repeat 1 74 0 3 1543 313 242 39 70 chr1 125678599 125678728 -71516704 + Lx7 LINE L1 7553 7677 -19 3 1543 3663 79 149 4 chr1 125678756 125679300 -71516132 + L1_Mus3 LINE L1 5854 6476 -162 3 1543 420 231 0 87 chr1 125679336 125679440 -71515992 - Lx5 LINE L1 -478 6572 6478 3 1543 1506 278 43 95 chr1 125679431 125680166 -71515266 - Lx5 LINE L1 -683 6367 5671 3 1543 808 281 5 14 chr1 125680168 125680381 -71515051 + Lx6 LINE L1 7114 7324 -136 3 1543 1539 64 29 5 chr1 125680394 125680599 -71514833 - L1_Mus1 LINE L1 -1 6566 6357 3 1543 461 32 0 0 chr1 125680599 125680656 -71514776 + L1_Mus2 LINE L1 5891 5947 -619 3 1543 345 295 33 0 chr1 125680654 125680776 -71514656 + Lx6 LINE L1 7309 7434 -26 3 1543 199 348 107 31 chr1 125681739 125682030 -71513402 + L2 LINE L2 1424 1736 -1683 3 1543 1417 281 151 30 chr1 125682100 125682658 -71512774 + Lx8 LINE L1 6847 7471 -2 4 1543 232 333 14 0 chr1 125682987 125683059 -71512373 + L2 LINE L2 2365 2437 -982 3 1543 657 355 41 17 chr1 125683077 125683369 -71512063 + MLT2D LTR ERVL 6 304 -110 4 1543 238 283 65 135 chr1 125683373 125683416 -71512016 - B2_Mm2 SINE B2 -6 189 4 4 1543 508 369 25 0 chr1 125683416 125683573 -71511859 - RSINE1 SINE B4 0 165 5 4 1543 224 271 0 0 chr1 125683639 125683687 -71511745 + CT-rich Low_complexity Low_complexity 1 48 0 4 1543 355 309 56 0 chr1 125684343 125684469 -71510963 + L2 LINE L2 2549 2681 -738 3 1543 309 51 0 0 chr1 125684941 125684980 -71510452 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 1543 1189 249 148 3 chr1 125684980 125685318 -71510114 + MTD LTR MaLR 19 405 -14 4 1543 183 156 0 0 chr1 125686121 125686153 -71509279 + GA-rich Low_complexity Low_complexity 2 33 0 4 1543 279 326 21 14 chr1 125686519 125686713 -71508719 + GA-rich Low_complexity Low_complexity 1 195 0 4 1543 2832 253 54 96 chr1 125687495 125688905 -71506527 + RMER1A Other Other 5 1028 -2 4 1543 282 244 0 0 chr1 125689350 125689432 -71506000 + (TA)n Simple_repeat Simple_repeat 1 82 0 4 1543 296 294 99 50 chr1 125689514 125689675 -71505757 + RLTR22_Mur LTR ERVK 1303 1471 -377 4 1543 1678 200 24 24 chr1 125690154 125690523 -71504909 - ORR1D1 LTR MaLR 0 374 6 4 1543 845 104 7 0 chr1 125691020 125691164 -71504268 + (TC)n Simple_repeat Simple_repeat 2 146 0 4 1543 418 281 14 99 chr1 125691164 125691306 -71504126 - RSINE1 SINE B4 -1 164 35 4 1543 609 72 0 0 chr1 125692347 125692430 -71503002 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 1543 405 0 0 0 chr1 125692678 125692723 -71502709 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1543 400 272 71 8 chr1 125692800 125692926 -71502506 - B1_Mur1 SINE Alu -14 135 2 4 1543 354 292 19 19 chr1 125693005 125693113 -71502319 - PB1D10 SINE Alu 0 117 10 4 1543 1516 205 31 3 chr1 125693229 125693547 -71501885 - ORR1A2 LTR MaLR 0 327 1 4 1543 180 0 0 0 chr1 125693588 125693608 -71501824 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1543 245 132 26 0 chr1 125693996 125694034 -71501398 + RLTR9A LTR ERVK 1 39 -329 4 1543 1519 166 169 3 chr1 125694480 125694830 -71500602 + RMER16-int LTR ERVK 255 662 -4744 4 1543 2000 177 44 10 chr1 125694824 125695235 -71500197 + RMER16-int LTR ERVK 861 1285 -4121 4 1543 702 242 76 37 chr1 125695274 125695532 -71499900 + ETnERV2-int LTR ERVK 2374 2547 -4859 4 1543 7502 129 42 28 chr1 125695714 125697036 -71498396 + RMER16-int LTR ERVK 1566 2906 -2500 4 1543 1290 149 4 31 chr1 125697034 125697263 -71498169 + RMER16-int LTR ERVK 4125 4347 -1059 4 1543 618 301 18 18 chr1 125697249 125697526 -71497906 + RLTR6-int LTR ERV1 7387 7663 -115 4 192 487 278 184 54 chr1 125697868 125698184 -71497248 + RLTR9A LTR ERVK 1 357 -11 4 1544 263 372 17 17 chr1 125698342 125698457 -71496975 + B1F2 SINE Alu 1 115 -34 4 1544 530 362 45 55 chr1 125699134 125699426 -71496006 + B4A SINE B4 4 292 0 4 1544 224 255 0 0 chr1 125699640 125699687 -71495745 + RSINE1 SINE B4 3 49 -116 4 1544 268 303 24 135 chr1 125699720 125699735 -71495697 - PB1D10 SINE Alu 0 117 105 4 1544 369 0 0 0 chr1 125699735 125699776 -71495656 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1544 288 0 0 0 chr1 125699776 125699807 -71495625 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1544 268 303 24 135 chr1 125699807 125699916 -71495516 - PB1D10 SINE Alu -13 104 7 4 1544 25 0 0 0 chr1 125700036 125700061 -71495371 + AT_rich Low_complexity Low_complexity 1 25 0 4 1544 611 26 13 0 chr1 125702210 125702287 -71493145 + (TC)n Simple_repeat Simple_repeat 2 79 0 4 1544 432 319 78 5 chr1 125702290 125702482 -71492950 - ID_B1 SINE B4 -14 210 5 4 1544 616 320 11 74 chr1 125702748 125702937 -71492495 - B3A SINE B2 -20 178 2 4 1544 453 19 0 0 chr1 125703187 125703241 -71492191 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1544 397 359 14 0 chr1 125703245 125703387 -71492045 - RSINE1 SINE B4 -10 155 12 4 1544 215 31 0 30 chr1 125704004 125704037 -71491395 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1544 1400 200 151 28 chr1 125704040 125704153 -71491279 - Lx9 LINE L1 -18 7626 7508 4 1544 384 71 0 0 chr1 125704153 125704209 -71491223 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1544 1400 200 151 28 chr1 125704209 125704559 -71490873 - Lx9 LINE L1 -137 7507 7107 4 1544 30 0 0 0 chr1 125704886 125704916 -71490516 + AT_rich Low_complexity Low_complexity 1 30 0 4 1544 1184 264 112 55 chr1 125704924 125705202 -71490230 - Lx7 LINE L1 -40 7656 7345 4 1544 315 0 0 0 chr1 125705202 125705237 -71490195 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1544 1184 264 112 55 chr1 125705237 125705311 -71490121 - Lx7 LINE L1 -352 7344 7260 4 1544 3281 44 12 2 chr1 125705311 125705725 -71489707 + L1Md_F3 LINE L1 6167 6584 0 4 1544 1184 264 112 55 chr1 125705725 125705861 -71489571 - Lx7 LINE L1 -437 7259 7139 4 1544 2050 246 71 69 chr1 125705864 125706427 -71489005 + Lx7 LINE L1 6145 6708 -988 4 1544 910 206 65 0 chr1 125706445 125706629 -71488803 + URR1A DNA MER1_type 31 226 0 4 1544 257 211 19 0 chr1 125706629 125706681 -71488751 + Lx7 LINE L1 6750 6802 -894 4 1544 1989 136 3 37 chr1 125706681 125707003 -71488429 + ORR1A4 LTR MaLR 10 320 -9 4 1544 183 80 0 0 chr1 125707035 125707060 -71488372 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1544 308 247 19 85 chr1 125707070 125707176 -71488256 - RSINE1 SINE B4 -193 99 1 4 1544 468 0 0 0 chr1 125707198 125707250 -71488182 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1544 1054 223 38 13 chr1 125707259 125707495 -71487937 + Lx7 LINE L1 6893 7134 -562 4 1544 356 280 43 64 chr1 125707622 125707763 -71487669 + B4 SINE B4 1 138 -154 4 1544 250 401 5 102 chr1 125707763 125707808 -71487624 + B3A SINE B2 1 168 -30 4 1544 228 279 0 29 chr1 125708159 125708229 -71487203 + (TATG)n Simple_repeat Simple_repeat 1 68 0 4 1544 441 368 59 61 chr1 125708471 125708931 -71486501 - MT2A LTR ERVL -74 459 1 4 1544 917 116 7 0 chr1 125709536 125709682 -71485750 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 4 1544 781 233 247 28 chr1 125709683 125709970 -71485462 - MTE2b LTR MaLR -20 359 10 4 1544 321 314 272 49 chr1 125710577 125710865 -71484567 + MT2A LTR ERVL 109 460 -73 4 1544 534 279 17 92 chr1 125711184 125711358 -71484074 - B3A SINE B2 -34 164 4 4 1544 248 326 0 0 chr1 125711983 125712072 -71483360 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 4 1544 1886 216 38 110 chr1 125712086 125712424 -71483008 - RMER6C LTR ERVK -124 566 276 4 1544 1917 217 34 38 chr1 125712424 125712950 -71482482 - RLTR11A2 LTR ERVK -1 526 3 4 1544 1886 216 38 110 chr1 125712950 125713221 -71482211 - RMER6C LTR ERVK -415 275 1 4 1544 289 303 11 63 chr1 125713282 125713377 -71482055 - B3A SINE B2 -11 187 98 4 1544 523 304 27 7 chr1 125713788 125713934 -71481498 + RSINE1 SINE B4 17 165 0 4 1544 744 298 118 34 chr1 125714123 125714537 -71480895 + Lx8 LINE L1 7009 7463 -10 4 1544 906 237 99 11 chr1 125714668 125714974 -71480458 + Lx7 LINE L1 7091 7693 -3 4 1544 584 50 12 0 chr1 125715150 125715230 -71480202 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 4 1544 189 107 0 0 chr1 125715231 125715259 -71480173 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1544 3628 57 25 0 chr1 125715292 125715762 -71479670 + L1Md_F2 LINE L1 5104 5585 -298 4 1544 7529 72 2 18 chr1 125715763 125716774 -71478658 + L1Md_F2 LINE L1 5587 6581 -1 4 1544 210 322 45 11 chr1 125716780 125716868 -71478564 - B4 SINE B4 -111 181 91 4 1544 917 164 11 0 chr1 125716888 125717065 -71478367 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 4 1544 266 294 31 61 chr1 125717106 125717269 -71478163 - SUBTEL_sa Satellite Satellite -8 166 9 4 1544 225 37 0 161 chr1 125717131 125717323 -71478109 + (CACAG)n Simple_repeat Simple_repeat 5 165 0 4 1544 316 226 140 70 chr1 125717327 125717427 -71478005 + B1_Mur2 SINE Alu 43 149 0 4 1544 420 289 10 0 chr1 125717426 125717523 -71477909 - B4 SINE B4 -181 111 14 4 1544 252 317 0 47 chr1 125717450 125717536 -71477896 - ID2 SINE ID -1 82 1 4 1544 37 0 0 0 chr1 125717607 125717644 -71477788 + AT_rich Low_complexity Low_complexity 1 37 0 4 1544 1053 268 84 7 chr1 125718764 125719039 -71476393 + MTEa LTR MaLR 38 333 -46 4 1544 1607 222 19 40 chr1 125719045 125719420 -71476012 + ORR1D1 LTR MaLR 8 374 0 4 1544 241 179 0 0 chr1 125719425 125719464 -71475968 + MTEa LTR MaLR 333 371 -8 4 1544 504 0 0 0 chr1 125720378 125720434 -71474998 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1544 311 325 83 41 chr1 125720436 125720702 -71474730 - B4A SINE B4 -14 278 2 4 1544 619 289 19 37 chr1 125720891 125721109 -71474323 + B3A SINE B2 1 203 -13 4 1544 332 43 22 0 chr1 125721113 125721159 -71474273 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1544 204 97 0 0 chr1 125721536 125721567 -71473865 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 4 1544 432 37 0 0 chr1 125722291 125722345 -71473087 + (TGG)n Simple_repeat Simple_repeat 1 54 0 4 1544 215 310 141 0 chr1 125722541 125722612 -71472820 + B3 SINE B2 96 176 -40 4 1544 240 355 73 55 chr1 125723483 125723757 -71471675 + MTD LTR MaLR 35 313 -106 4 1544 186 43 0 0 chr1 125723945 125723968 -71471464 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1544 748 282 42 67 chr1 125724038 125724350 -71471082 + MTE2a LTR MaLR 72 375 -4 4 1544 191 36 36 0 chr1 125724570 125724598 -71470834 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1544 494 284 111 73 chr1 125724750 125725016 -71470416 + ORR1E LTR MaLR 36 285 -85 4 1544 396 275 0 29 chr1 125725035 125725140 -71470292 + ORR1E LTR MaLR 278 379 0 4 1544 466 315 62 62 chr1 125725724 125726015 -71469417 + B4 SINE B4 1 291 -1 4 1544 504 48 0 0 chr1 125726015 125726078 -71469354 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1544 236 167 0 20 chr1 125729084 125729133 -71466299 + Lx4B LINE L1 7007 7054 -4 4 1544 6872 102 8 6 chr1 125729138 125730180 -71465252 - L1_Mur1 LINE L1 -966 4920 3877 4 1544 5539 149 22 16 chr1 125730180 125731142 -71464290 + Lx3A LINE L1 6007 6974 -7 4 1544 21 95 0 0 chr1 125731172 125731235 -71464197 + AT_rich Low_complexity Low_complexity 1 63 0 4 1544 761 204 0 14 chr1 125731457 125731601 -71463831 + B1_Mur4 SINE Alu 1 142 -8 4 1544 604 299 84 81 chr1 125731793 125732113 -71463319 + MTEa LTR MaLR 11 331 -48 4 1544 596 296 84 105 chr1 125732117 125732281 -71463151 + ORR1D2 LTR MaLR 1 161 -209 4 1544 441 0 0 0 chr1 125732281 125732330 -71463102 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 4 1544 596 296 84 105 chr1 125732330 125732535 -71462897 + ORR1D2 LTR MaLR 162 362 -8 4 1544 342 0 0 0 chr1 125733229 125733267 -71462165 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1544 531 45 0 0 chr1 125733267 125733332 -71462100 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1544 790 315 112 32 chr1 125733379 125733628 -71461804 - B4 SINE B4 -2 290 22 5 1544 227 273 44 33 chr1 125733632 125733723 -71461709 + LTR48B LTR ERV1 246 337 -307 5 1544 1518 261 16 76 chr1 125733946 125734447 -71460985 - RMER19C LTR ERVK -3 608 138 5 1544 422 274 36 93 chr1 125734738 125734931 -71460501 - B3A SINE B2 -15 183 2 5 1544 180 135 0 0 chr1 125735575 125735612 -71459820 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1544 595 323 39 5 chr1 125735613 125735809 -71459623 - B3A SINE B2 -17 199 1 5 1544 670 323 38 30 chr1 125735838 125736074 -71459358 + B4 SINE B4 1 238 -54 5 1544 22 0 0 0 chr1 125736261 125736283 -71459149 + AT_rich Low_complexity Low_complexity 1 22 0 5 1544 527 96 0 12 chr1 125736494 125736578 -71458854 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1544 190 213 21 21 chr1 125736652 125736700 -71458732 + L2c LINE L2 3331 3378 -9 5 1544 217 204 20 20 chr1 125737119 125737169 -71458263 + B4A SINE B4 1 50 -242 5 1544 296 282 13 13 chr1 125738552 125738631 -71456801 + B3A SINE B2 3 81 -117 5 1544 21 0 0 0 chr1 125738857 125738878 -71456554 + AT_rich Low_complexity Low_complexity 1 21 0 5 1544 432 91 0 0 chr1 125739256 125739322 -71456110 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 5 1544 310 355 24 32 chr1 125739375 125739500 -71455932 + B3A SINE B2 2 125 -73 5 1544 351 44 0 0 chr1 125739508 125739553 -71455879 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1544 251 410 9 0 chr1 125740186 125740291 -71455141 + MIRc SINE MIR 46 151 -117 5 1544 241 309 124 67 chr1 125741180 125741374 -71454058 + MIRc SINE MIR 26 230 -38 5 1544 725 284 0 67 chr1 125741885 125742093 -71453339 - B3A SINE B2 -4 194 1 5 1544 351 279 163 8 chr1 125743561 125743684 -71451748 - B3A SINE B2 -54 144 3 5 1544 631 279 7 0 chr1 125743796 125743950 -71451482 - RSINE1 SINE B4 -8 157 3 5 1544 257 318 0 0 chr1 125745173 125745236 -71450196 + PB1D7 SINE Alu 33 95 -25 5 1544 366 23 0 0 chr1 125745243 125745286 -71450146 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1544 877 256 68 91 chr1 125745293 125745722 -71449710 - MTD LTR MaLR 0 419 1 5 1544 1367 84 16 5 chr1 125746179 125746371 -71449061 + B2_Mm2 SINE B2 1 194 -1 5 1544 1146 257 100 76 chr1 125746433 125746905 -71448527 + RMER5 LTR ERV1 52 534 0 5 1544 891 299 28 34 chr1 125747022 125747379 -71448053 + Lx8 LINE L1 7115 7469 -4 5 1544 579 66 0 0 chr1 125748539 125748615 -71446817 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1544 681 272 0 7 chr1 125749848 125749996 -71445436 + B1_Mus1 SINE Alu 2 148 0 5 1544 202 29 28 28 chr1 125750449 125750485 -71444947 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 5 1544 243 0 0 0 chr1 125750533 125750560 -71444872 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1544 268 349 28 28 chr1 125751003 125751112 -71444320 - PB1D10 SINE Alu 0 117 9 5 1544 249 200 0 123 chr1 125752064 125752121 -71443311 + B2_Mm2 SINE B2 1 50 -145 5 1544 462 298 63 52 chr1 125752303 125752494 -71442938 - B3A SINE B2 0 195 3 5 1544 1914 210 51 16 chr1 125752853 125753617 -71441815 + L1_Mur1 LINE L1 9 1250 -5734 5 1544 35431 35 0 0 chr1 125753618 125759054 -71436378 + L1Md_T LINE L1 56 5589 -297 5 1544 8975 5 0 0 chr1 125759054 125760050 -71435382 + L1Md_T LINE L1 5590 6585 0 5 1544 22804 104 12 29 chr1 125760067 125762164 -71433268 + L1_Mur1 LINE L1 1236 3264 -2622 5 1544 1224 80 57 0 chr1 125762164 125762339 -71433093 + L1_Mus2 LINE L1 6381 6565 -1 5 1544 22804 104 12 29 chr1 125762339 125763939 -71431493 + L1_Mur1 LINE L1 3265 4872 -1014 5 1544 981 103 0 0 chr1 125763968 125764143 -71431289 + (GAA)n Simple_repeat Simple_repeat 3 177 0 5 1544 30043 84 20 22 chr1 125764146 125768622 -71426810 + L1Md_F LINE L1 366 4919 -964 5 1544 227 279 30 61 chr1 125768622 125768721 -71426711 - RMER20A LTR ERVK -235 281 186 5 1544 30043 84 20 22 chr1 125768721 125769375 -71426057 + L1Md_F LINE L1 4920 5586 -297 5 1544 7937 55 4 0 chr1 125769375 125770366 -71425066 + L1Md_F2 LINE L1 5587 6581 -1 5 1544 37914 12 2 7 chr1 125770367 125775741 -71419691 + L1Md_A LINE L1 244 5586 -297 5 1544 8649 15 2 9 chr1 125775741 125776744 -71418688 + L1Md_A LINE L1 5587 6582 0 5 1544 4438 93 8 5 chr1 125776828 125777451 -71417981 + L1_Mur1 LINE L1 4925 5549 -337 5 1544 254 146 0 0 chr1 125777452 125777493 -71417939 + L1_Mur1 LINE L1 5078 5118 -768 5 1544 4504 96 4 1 chr1 125777489 125778168 -71417264 - MusHAL1 LINE L1 -538 2174 1494 5 1544 6419 121 30 3 chr1 125778167 125779180 -71416252 + Lx3_Mus LINE L1 5959 6998 -11 5 1544 28 29 0 0 chr1 125779180 125779215 -71416217 + AT_rich Low_complexity Low_complexity 1 35 0 5 1544 229 307 91 43 chr1 125779322 125779509 -71415923 - L1MD2 LINE L1 -45 6314 6119 5 1544 1425 271 93 69 chr1 125779921 125780500 -71414932 + Lx7 LINE L1 6737 7329 -367 5 1544 284 70 0 23 chr1 125780509 125780553 -71414879 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 5 1544 360 0 0 0 chr1 125780662 125780702 -71414730 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1544 567 53 0 0 chr1 125780702 125780776 -71414656 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1544 457 309 64 58 chr1 125781768 125782099 -71413333 + RMER15 LTR ERVL 23 478 -97 5 1544 231 337 0 21 chr1 125782525 125782622 -71412810 + CT-rich Low_complexity Low_complexity 3 97 0 5 1544 2054 168 59 8 chr1 125782661 125783033 -71412399 - ORR1B1 LTR MaLR -3 391 1 5 1544 870 38 0 0 chr1 125783226 125783332 -71412100 + (GAA)n Simple_repeat Simple_repeat 3 108 0 5 1544 342 353 22 36 chr1 125784602 125784740 -71410692 - RSINE1 SINE B4 -2 163 28 5 1544 7578 153 28 21 chr1 125784748 125786092 -71409340 - Lx2 LINE L1 -1 6996 5644 5 1544 358 253 70 6 chr1 125786342 125786517 -71408915 + L1_Mur3 LINE L1 5278 5470 -413 5 1544 974 306 110 28 chr1 125786518 125787430 -71408002 + Lx8 LINE L1 5387 6375 -1098 5 1544 518 291 130 42 chr1 125787452 125787714 -71407718 - Lx9 LINE L1 -519 7125 6841 5 1544 2578 254 54 31 chr1 125787971 125788714 -71406718 - RLTR40 LTR ERVK -57 760 1 5 1544 825 378 11 0 chr1 125789419 125789697 -71405735 - B4A SINE B4 -6 286 6 5 1544 365 340 45 35 chr1 125789990 125790279 -71405153 + B4A SINE B4 1 292 0 5 1544 324 158 0 0 chr1 125790292 125790349 -71405083 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1544 267 133 0 0 chr1 125790413 125790458 -71404974 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1544 736 293 26 86 chr1 125791044 125791473 -71403959 + L1MA4A LINE L1 5525 5927 -376 5 1544 337 184 67 13 chr1 125791654 125791803 -71403629 + (TCTA)n Simple_repeat Simple_repeat 1 157 0 5 1544 763 331 98 15 chr1 125792495 125792820 -71402612 - MTE2b LTR MaLR 0 379 28 5 1544 292 248 76 129 chr1 125792820 125792991 -71402441 + RSINE1 SINE B4 2 163 -2 5 1544 241 305 75 19 chr1 125793073 125793180 -71402252 + MIR SINE MIR 140 252 -10 5 1544 669 268 10 10 chr1 125793385 125793581 -71401851 + B3A SINE B2 1 196 -2 5 1544 22 0 0 0 chr1 125794224 125794246 -71401186 + AT_rich Low_complexity Low_complexity 1 22 0 5 1544 483 365 38 19 chr1 125794358 125794570 -71400862 - Lx8 LINE L1 -148 7325 7110 5 1544 1730 268 116 23 chr1 125794689 125795120 -71400312 - RLTR40 LTR ERVK -41 776 287 5 1544 202 29 57 0 chr1 125795120 125795155 -71400277 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1544 1730 268 116 23 chr1 125795155 125795432 -71400000 - RLTR40 LTR ERVK -531 286 3 5 1544 423 0 0 0 chr1 125795540 125795587 -71399845 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1544 2070 286 53 17 chr1 125795616 125795936 -71399496 - Lx8 LINE L1 -101 7372 7043 5 1544 243 0 0 0 chr1 125795936 125795963 -71399469 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1544 2070 286 53 17 chr1 125795963 125796339 -71399093 - Lx8 LINE L1 -431 7042 6652 5 1544 199 73 48 24 chr1 125796514 125796556 -71398876 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1544 630 325 52 22 chr1 125796715 125796983 -71398449 - B4 SINE B4 -16 276 1 5 1544 262 63 94 16 chr1 125797196 125797260 -71398172 + CT-rich Low_complexity Low_complexity 2 70 0 5 1544 773 75 0 70 chr1 125797261 125797448 -71397984 + (TTCTCC)n Simple_repeat Simple_repeat 4 177 0 5 1544 511 280 0 83 chr1 125797518 125797662 -71397770 - B1_Mur4 SINE Alu -1 149 18 5 1544 207 0 0 0 chr1 125798301 125798324 -71397108 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1544 276 30 0 0 chr1 125798324 125798356 -71397076 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1544 193 202 0 43 chr1 125798375 125798468 -71396964 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 5 1544 21 0 0 0 chr1 125798667 125798688 -71396744 + AT_rich Low_complexity Low_complexity 1 21 0 5 1544 775 275 116 0 chr1 125798923 125799181 -71396251 + MT2A LTR ERVL 196 483 -50 5 1544 25 31 0 0 chr1 125800369 125800401 -71395031 + AT_rich Low_complexity Low_complexity 1 32 0 5 1544 467 342 50 30 chr1 125800874 125801076 -71394356 - ID_B1 SINE B4 -18 206 1 5 1544 386 313 72 88 chr1 125801099 125801348 -71394084 - L1MD1 LINE L1 -300 5942 5698 5 1544 450 0 0 0 chr1 125802322 125802372 -71393060 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1544 279 0 0 0 chr1 125802372 125802402 -71393030 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1544 240 188 0 0 chr1 125802402 125802450 -71392982 + GA-rich Low_complexity Low_complexity 1 48 0 5 1544 504 32 0 0 chr1 125802660 125802722 -71392710 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1544 366 306 119 40 chr1 125802784 125802883 -71392549 - B4A SINE B4 -18 274 173 5 1544 741 79 0 0 chr1 125802883 125802984 -71392448 + (TTCTC)n Simple_repeat Simple_repeat 2 102 0 5 1544 366 306 119 40 chr1 125802984 125803136 -71392296 - B4A SINE B4 -120 172 3 5 1544 1058 151 131 0 chr1 125803331 125803530 -71391902 + URR1A DNA MER1_type 1 225 -1 6 1544 610 329 34 60 chr1 125803678 125803976 -71391456 + B4 SINE B4 3 292 0 6 1544 215 283 0 0 chr1 125803978 125804031 -71391401 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1544 3212 212 56 38 chr1 125804551 125805341 -71390091 - RLTR40 LTR ERVK 0 817 14 6 1544 214 354 0 0 chr1 125805384 125805449 -71389983 + RSINE1 SINE B4 91 155 -10 6 1544 25 51 0 0 chr1 125805514 125805553 -71389879 + AT_rich Low_complexity Low_complexity 1 39 0 6 1544 408 20 0 0 chr1 125806246 125806295 -71389137 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1544 233 286 47 16 chr1 125806300 125806364 -71389068 - RSINE1 SINE B4 -26 139 74 6 1544 412 265 105 77 chr1 125806355 125806498 -71388934 - RSINE1 SINE B4 0 165 19 6 1544 382 359 21 0 chr1 125806623 125806765 -71388667 + RSINE1 SINE B4 3 147 -18 6 1544 292 43 43 0 chr1 125806801 125806847 -71388585 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1544 29 47 0 0 chr1 125807083 125807126 -71388306 + AT_rich Low_complexity Low_complexity 1 43 0 6 1544 243 0 0 0 chr1 125807267 125807294 -71388138 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 6 1544 603 0 0 0 chr1 125807320 125807387 -71388045 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 6 1544 1782 147 0 4 chr1 125807390 125807670 -71387762 - Lx3A LINE L1 -16 6965 6687 6 1544 327 141 12 37 chr1 125807670 125807751 -71387681 + Lx3A LINE L1 4583 4661 -1225 6 1544 8937 99 10 16 chr1 125807781 125809868 -71385564 + Lx3A LINE L1 4632 6699 -282 6 1544 322 280 238 7 chr1 125810009 125810160 -71385272 + B3A SINE B2 1 186 -12 6 1544 221 347 93 26 chr1 125810404 125810555 -71384877 + MER5A DNA MER1_type 15 175 -14 6 1544 814 286 9 5 chr1 125810948 125811166 -71384266 + ID_B1 SINE B4 2 220 -4 6 1544 480 300 30 30 chr1 125811318 125811452 -71383980 - B3A SINE B2 -13 203 70 6 1544 21 36 0 0 chr1 125811836 125811864 -71383568 + AT_rich Low_complexity Low_complexity 1 28 0 6 1544 201 300 12 24 chr1 125812280 125812362 -71383070 + GA-rich Low_complexity Low_complexity 4 84 0 6 1544 860 279 109 26 chr1 125812471 125812810 -71382622 + Lx2B LINE L1 6630 6996 -4 6 1544 1766 158 3 0 chr1 125814361 125814659 -71380773 + Lx2 LINE L1 6034 6332 -665 6 1544 30 0 0 0 chr1 125814667 125814697 -71380735 + AT_rich Low_complexity Low_complexity 1 30 0 6 1544 312 238 0 0 chr1 125814819 125814882 -71380550 + ID_B1 SINE B4 81 143 -81 6 1544 302 296 0 0 chr1 125814820 125814891 -71380541 + B1F2 SINE Alu 1 71 -78 6 1544 233 274 0 31 chr1 125814951 125815015 -71380417 + GA-rich Low_complexity Low_complexity 3 64 0 6 1544 700 295 146 8 chr1 125815649 125815844 -71379588 + B4A SINE B4 2 222 -70 6 1544 324 0 0 0 chr1 125815844 125815880 -71379552 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 6 1544 700 295 152 8 chr1 125815880 125815893 -71379539 + B4A SINE B4 223 246 -46 6 1544 1665 173 39 7 chr1 125815893 125816202 -71379230 + Lx2 LINE L1 6335 6653 -1 6 1544 700 295 152 8 chr1 125816202 125816244 -71379188 + B4A SINE B4 247 287 -5 6 1544 252 353 68 21 chr1 125816619 125816810 -71378622 + MamRep605 Unknown Unknown 569 768 -108 6 1544 870 297 56 0 chr1 125817093 125817362 -71378070 + B4A SINE B4 4 287 -5 6 1544 450 0 0 0 chr1 125817378 125817428 -71378004 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1544 195 45 43 43 chr1 125817557 125817603 -71377829 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 6 1544 1151 74 0 0 chr1 125817603 125817751 -71377681 - B1_Mus1 SINE Alu 0 148 1 6 1544 366 42 0 0 chr1 125818407 125818455 -71376977 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1544 522 0 0 0 chr1 125818455 125818512 -71376920 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1544 1372 214 50 66 chr1 125818624 125819004 -71376428 + ORR1D1 LTR MaLR 1 374 0 6 1544 458 324 82 27 chr1 125819008 125819192 -71376240 + B4A SINE B4 9 202 -90 6 1544 235 146 18 18 chr1 125819198 125819254 -71376178 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1544 583 298 0 57 chr1 125819376 125819586 -71375846 - B3A SINE B2 0 198 1 6 1544 181 176 0 29 chr1 125820424 125820459 -71374973 + L3b LINE CR1 185 218 -264 6 1544 1083 268 91 41 chr1 125820917 125821259 -71374173 + ORR1E LTR MaLR 1 359 0 6 1544 1026 47 0 0 chr1 125821313 125821441 -71373991 + (TC)n Simple_repeat Simple_repeat 2 129 0 6 1544 462 88 0 0 chr1 125821944 125822012 -71373420 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1544 207 200 0 0 chr1 125822266 125822311 -71373121 + (TTAA)n Simple_repeat Simple_repeat 1 45 0 6 1544 236 221 0 13 chr1 125822322 125822400 -71373032 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1544 728 313 71 42 chr1 125822432 125822672 -71372760 - B4A SINE B4 -21 271 25 6 1544 550 291 86 19 chr1 125824314 125824570 -71370862 + B4A SINE B4 3 275 -17 6 1544 682 269 162 25 chr1 125824738 125825058 -71370374 + Lx8 LINE L1 6876 7239 -234 6 1544 22 0 0 0 chr1 125825227 125825249 -71370183 + AT_rich Low_complexity Low_complexity 1 22 0 6 1544 606 332 43 129 chr1 125825859 125826450 -71368982 - RMER20B LTR ERVK -46 581 1 6 1544 970 264 125 55 chr1 125826451 125826796 -71368636 + MTE2a LTR MaLR 6 374 -5 6 1544 210 71 0 0 chr1 125827144 125827172 -71368260 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1544 297 75 0 0 chr1 125827172 125827212 -71368220 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1544 356 365 9 0 chr1 125827287 125827402 -71368030 + RSINE1 SINE B4 4 119 -46 6 1544 369 0 0 0 chr1 125827403 125827444 -71367988 + (CATA)n Simple_repeat Simple_repeat 4 44 0 6 1544 424 331 12 64 chr1 125828108 125828279 -71367153 + RSINE1 SINE B4 4 165 0 6 1544 664 282 128 55 chr1 125828765 125828929 -71366503 + ORR1D2 LTR MaLR 1 156 -214 6 1544 684 56 0 0 chr1 125828929 125829018 -71366414 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 2 664 282 128 55 chr1 125829018 125829198 -71366234 + ORR1D2 LTR MaLR 157 369 -1 6 1545 348 344 10 10 chr1 125829299 125829396 -71366036 + RSINE1 SINE B4 41 137 -28 6 1545 40 49 0 0 chr1 125829399 125829460 -71365972 + AT_rich Low_complexity Low_complexity 1 61 0 6 1545 262 323 0 0 chr1 125829510 125829606 -71365826 + L1MD LINE L1 4202 4297 -1849 6 1545 3259 63 4 43 chr1 125829619 125830082 -71365350 + L1_Mus2 LINE L1 6122 6566 0 6 1545 853 240 62 33 chr1 125830446 125830657 -71364775 + ID_B1 SINE B4 8 224 0 6 1545 201 175 0 0 chr1 125831293 125831333 -71364099 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1545 644 317 11 27 chr1 125831343 125831528 -71363904 - B3A SINE B2 -16 182 1 6 1545 21 57 0 0 chr1 125831919 125831954 -71363478 + AT_rich Low_complexity Low_complexity 1 35 0 6 1545 1890 130 30 45 chr1 125832075 125832405 -71363027 + ORR1A2 LTR MaLR 3 327 0 6 1545 1423 247 58 19 chr1 125832441 125832800 -71362632 + MTE2a LTR MaLR 1 373 -6 6 1545 216 0 0 0 chr1 125833306 125833330 -71362102 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1545 528 93 0 0 chr1 125833330 125833405 -71362027 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1545 468 0 0 0 chr1 125833448 125833500 -71361932 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 6 1545 318 230 52 103 chr1 125833914 125834108 -71361324 + B2_Mm2 SINE B2 1 184 -11 6 1545 2705 70 0 0 chr1 125834684 125835029 -71360403 + ORR1A1 LTR MaLR 1 345 -1 6 1545 705 290 54 15 chr1 125835044 125835247 -71360185 - B3 SINE B2 -5 211 1 6 1545 250 222 22 0 chr1 125835253 125835298 -71360134 + RCHARR1 DNA MER1_type 2 47 -927 6 1545 387 84 47 24 chr1 125835323 125835408 -71360024 + (CAGAGA)n Simple_repeat Simple_repeat 3 89 0 6 1545 712 314 40 13 chr1 125835410 125835797 -71359635 + RCHARR1 DNA MER1_type 88 520 -454 6 1545 247 346 36 93 chr1 125835774 125835874 -71359558 - RMER12 LTR ERVK -446 876 773 6 1545 180 77 0 0 chr1 125835874 125835900 -71359532 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1545 822 48 0 0 chr1 125835900 125836003 -71359429 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 6 1545 247 346 36 93 chr1 125836003 125836041 -71359391 - RMER12 LTR ERVK -550 772 746 6 1545 1991 233 29 25 chr1 125837029 125837473 -71357959 - Lx5 LINE L1 -10 7040 6595 6 1545 221 350 60 0 chr1 125837547 125837647 -71357785 + RSINE1 SINE B4 43 148 -17 6 1545 188 143 24 0 chr1 125837721 125837763 -71357669 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1545 34 84 0 0 chr1 125838743 125838826 -71356606 + AT_rich Low_complexity Low_complexity 1 83 0 6 1545 595 350 91 86 chr1 125839026 125839117 -71356315 - MER44D DNA MER2_type -10 695 602 6 1545 411 21 0 0 chr1 125839117 125839165 -71356267 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1545 595 350 91 86 chr1 125839165 125839238 -71356194 - MER44D DNA MER2_type -104 601 526 6 1545 589 272 22 0 chr1 125839238 125839374 -71356058 + B1_Mur3 SINE Alu 1 139 -10 6 1545 510 70 0 0 chr1 125839374 125839445 -71355987 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1545 790 350 90 54 chr1 125839445 125839672 -71355760 - Tigger7 DNA MER2_type -180 525 319 6 1545 3010 136 42 10 chr1 125839672 125840178 -71355254 + Lx LINE L1 6121 6642 -12 6 1545 717 12 0 0 chr1 125840178 125840260 -71355172 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 6 1545 790 350 88 22 chr1 125840260 125840554 -71354878 - Tigger7 DNA MER2_type -2173 318 3 6 1545 406 289 54 34 chr1 125840697 125840844 -71354588 + RSINE1 SINE B4 11 160 -5 6 1545 364 174 0 14 chr1 125840913 125840983 -71354449 + HAL1-3A_ME LINE L1 1976 2044 -814 6 1545 381 307 42 58 chr1 125841478 125841668 -71353764 - B2_Mm2 SINE B2 -8 187 1 6 1545 577 279 74 5 chr1 125841726 125841928 -71353504 - ID_B1 SINE B4 -4 220 5 6 1545 308 279 0 11 chr1 125843225 125843312 -71352120 + B4 SINE B4 2 87 -205 6 1545 404 228 9 0 chr1 125843314 125843428 -71352004 + GA-rich Low_complexity Low_complexity 1 115 0 6 1545 635 354 12 3 chr1 125843431 125843647 -71351785 + B4 SINE B4 77 292 0 6 1545 270 164 0 0 chr1 125843955 125844010 -71351422 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1545 440 335 156 19 chr1 125844010 125844040 -71351392 - B4A SINE B4 0 292 264 6 1545 1005 126 0 0 chr1 125844040 125844215 -71351217 + (TG)n Simple_repeat Simple_repeat 2 176 0 7 1545 440 335 156 19 chr1 125844215 125844440 -71350992 - B4A SINE B4 -29 263 3 6 1545 513 0 0 0 chr1 125844830 125844887 -71350545 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1545 231 88 0 0 chr1 125845404 125845438 -71349994 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 7 1545 585 272 34 24 chr1 125845780 125845987 -71349445 + B3 SINE B2 1 209 -7 7 1545 334 316 141 23 chr1 125846345 125846601 -71348831 - B4A SINE B4 -4 288 3 7 1545 649 319 0 12 chr1 125847248 125847410 -71348022 + RSINE1 SINE B4 6 165 0 7 1545 216 328 40 124 chr1 125847410 125847450 -71347982 + B2_Mm1a SINE B2 5 189 -4 7 1545 23 0 0 0 chr1 125848029 125848052 -71347380 + AT_rich Low_complexity Low_complexity 1 23 0 7 1545 533 275 103 37 chr1 125848188 125848430 -71347002 - Lx8 LINE L1 -3 7470 7213 7 1545 6892 38 30 1 chr1 125848473 125849321 -71346111 - L1Md_F3 LINE L1 0 6584 5713 7 1545 563 291 141 34 chr1 125849343 125849606 -71345826 - Lx8 LINE L1 -362 7111 6821 7 1545 677 276 11 21 chr1 125849774 125849963 -71345469 + B3A SINE B2 3 189 -9 7 1545 618 71 0 0 chr1 125850264 125850348 -71345084 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 1545 898 288 19 48 chr1 125850370 125850640 -71344792 - B4 SINE B4 -22 270 9 7 1545 1138 224 13 5 chr1 125851030 125851254 -71344178 - MTD LTR MaLR 0 419 194 7 1545 405 316 8 0 chr1 125851261 125851378 -71344054 + B3A SINE B2 69 186 -12 7 1545 512 260 55 5 chr1 125851858 125852054 -71343378 + Lx7 LINE L1 5673 5909 -1787 7 1545 431 267 36 51 chr1 125852866 125853004 -71342428 + B1_Mur2 SINE Alu 1 136 -13 7 1545 489 34 0 0 chr1 125853545 125853604 -71341828 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1545 214 208 11 182 chr1 125853606 125853694 -71341738 - RSINE1 SINE B4 0 165 93 7 1545 293 371 104 36 chr1 125853660 125853909 -71341523 - B4A SINE B4 -20 272 7 7 1545 216 111 0 0 chr1 125854740 125854776 -71340656 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1545 333 0 0 0 chr1 125854778 125854815 -71340617 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1545 441 0 0 0 chr1 125854838 125854887 -71340545 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1545 227 287 157 27 chr1 125855782 125855826 -71339606 - Charlie8 DNA MER1_type -2106 322 260 7 1545 442 376 7 13 chr1 125855826 125855977 -71339455 + B3A SINE B2 1 150 -48 7 1545 414 0 0 0 chr1 125855981 125856027 -71339405 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1545 192 77 0 0 chr1 125856830 125856856 -71338576 + (CAT)n Simple_repeat Simple_repeat 3 28 0 7 1545 418 206 0 0 chr1 125856856 125856929 -71338503 - ID4_ SINE ID -10 73 1 7 1545 692 317 14 42 chr1 125856951 125857168 -71338264 - B3A SINE B2 -3 213 3 7 1545 669 273 78 54 chr1 125857739 125858033 -71337399 + MTE2a LTR MaLR 22 322 -57 7 1545 291 276 39 13 chr1 125858633 125858710 -71336722 - B4A SINE B4 -190 102 24 7 1545 2769 91 2 12 chr1 125859140 125859539 -71335893 - L1Md_F2 LINE L1 -3 6579 6185 7 1545 411 21 0 0 chr1 125859544 125859592 -71335840 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1545 498 17 0 0 chr1 125859592 125859650 -71335782 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1545 494 337 41 29 chr1 125859720 125859891 -71335541 - ID_B1 SINE B4 -51 173 1 7 1545 412 279 55 79 chr1 125860781 125860967 -71334465 - B4A SINE B4 -10 282 4 7 1545 251 363 64 72 chr1 125861035 125861299 -71334133 + LTR88c LTR Genie? 118 379 -483 7 1545 1413 252 41 28 chr1 125861471 125861834 -71333598 + MTEa LTR MaLR 8 375 -4 7 1545 331 219 9 19 chr1 125862469 125862576 -71332856 + (TATG)n Simple_repeat Simple_repeat 2 107 0 7 1545 180 0 0 0 chr1 125862591 125862611 -71332821 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1545 456 19 0 0 chr1 125862611 125862663 -71332769 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1545 349 319 96 0 chr1 125862843 125862978 -71332454 - RSINE1 SINE B4 -6 159 12 7 1545 9959 175 52 7 chr1 125863238 125864439 -71330993 + Lx3C LINE L1 3816 5088 -789 7 1545 5558 114 16 9 chr1 125864439 125865290 -71330142 + Lx LINE L1 5798 6654 0 7 1545 9959 191 50 13 chr1 125865290 125867102 -71328330 + Lx3C LINE L1 5089 6974 -2 7 1545 29 0 0 0 chr1 125867102 125867131 -71328301 + AT_rich Low_complexity Low_complexity 1 29 0 7 1545 1115 274 162 16 chr1 125867145 125867813 -71327619 + Lx9 LINE L1 6878 7642 -2 7 1545 712 285 45 10 chr1 125868294 125868496 -71326936 + B3 SINE B2 2 210 -6 7 1545 1441 229 33 38 chr1 125868496 125868868 -71326564 - ORR1D1 LTR MaLR -8 371 1 7 1545 4738 120 14 0 chr1 125869009 125869716 -71325716 - Lx2 LINE L1 0 6997 6281 7 1545 382 293 14 54 chr1 125869884 125870032 -71325400 - ID_B1 SINE B4 -81 143 2 7 1545 24 32 0 0 chr1 125870050 125870081 -71325351 + AT_rich Low_complexity Low_complexity 1 31 0 7 1545 207 0 0 0 chr1 125870820 125870843 -71324589 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1545 381 129 0 0 chr1 125871635 125871705 -71323727 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1545 279 182 0 0 chr1 125871705 125871782 -71323650 + GA-rich Low_complexity Low_complexity 2 78 0 7 1545 431 292 104 78 chr1 125871782 125872012 -71323420 - B4 SINE B4 -1 291 56 7 1545 636 102 0 0 chr1 125872779 125872877 -71322555 + (CA)n Simple_repeat Simple_repeat 1 98 0 7 1545 761 290 38 0 chr1 125872904 125873087 -71322345 + B3A SINE B2 1 190 -8 7 1545 1155 137 16 0 chr1 125873465 125873648 -71321784 - B2_Mm2 SINE B2 -8 187 2 7 1545 210 37 0 0 chr1 125873696 125873723 -71321709 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1545 1065 106 0 0 chr1 125874711 125874891 -71320541 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1545 261 300 49 24 chr1 125875763 125875814 -71319618 + B4A SINE B4 46 98 -194 7 1545 676 275 48 34 chr1 125875814 125876021 -71319411 + B3 SINE B2 1 210 -6 7 1545 330 252 116 16 chr1 125876089 125876218 -71319214 + B4A SINE B4 150 291 -1 7 1545 302 0 0 26 chr1 125876246 125876285 -71319147 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1545 301 299 299 0 chr1 125877089 125877233 -71318199 + B3A SINE B2 5 191 -7 7 1545 22 80 0 0 chr1 125877330 125877380 -71318052 + AT_rich Low_complexity Low_complexity 1 50 0 7 1545 23 0 0 0 chr1 125878119 125878142 -71317290 + AT_rich Low_complexity Low_complexity 1 23 0 7 1545 530 402 0 0 chr1 125878154 125878328 -71317104 + B3A SINE B2 2 175 -23 7 1545 423 0 0 0 chr1 125878329 125878376 -71317056 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1545 1312 281 13 40 chr1 125879308 125879686 -71315746 + MTE2b LTR MaLR 5 372 -7 7 1545 717 114 0 0 chr1 125880815 125880947 -71314485 + (TC)n Simple_repeat Simple_repeat 2 133 0 7 1545 270 0 0 0 chr1 125880956 125880986 -71314446 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1545 452 18 18 0 chr1 125881696 125881753 -71313679 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1545 344 364 78 0 chr1 125882454 125882608 -71312824 - MER102b DNA MER1_type -48 293 128 7 1545 27 49 0 0 chr1 125882818 125882859 -71312573 + AT_rich Low_complexity Low_complexity 1 41 0 7 1545 359 333 62 100 chr1 125883784 125884074 -71311358 - B4A SINE B4 -11 281 3 7 1545 229 163 170 80 chr1 125884117 125884217 -71311215 + Cheshire DNA MER1_type 890 998 -1422 7 1545 261 0 0 0 chr1 125884340 125884369 -71311063 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1545 706 266 107 20 chr1 125884424 125884620 -71310812 - B4A SINE B4 -40 252 40 7 1545 222 226 179 15 chr1 125885025 125885091 -71310341 + RSINE1 SINE B4 11 87 -205 7 1545 1064 95 7 0 chr1 125885097 125885244 -71310188 + B1_Mus1 SINE Alu 1 148 0 7 1545 373 50 33 0 chr1 125885244 125885304 -71310128 + (CAAAAA)n Simple_repeat Simple_repeat 6 67 0 7 1545 306 0 0 0 chr1 125885369 125885403 -71310029 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1545 25 65 0 0 chr1 125885487 125885533 -71309899 + AT_rich Low_complexity Low_complexity 1 46 0 7 1545 896 304 108 15 chr1 125885829 125886170 -71309262 - MTE2a LTR MaLR -6 373 1 7 1545 208 214 0 0 chr1 125886372 125886414 -71309018 + CT-rich Low_complexity Low_complexity 2 43 0 7 1545 606 258 53 120 chr1 125886834 125887147 -71308285 + ORR1E LTR MaLR 1 371 -8 7 1545 4255 30 0 10 chr1 125887468 125887977 -71307455 - L1Md_F3 LINE L1 -16 6568 6065 7 1545 348 24 0 0 chr1 125887999 125888040 -71307392 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1545 653 303 16 42 chr1 125888405 125888598 -71306834 + B4A SINE B4 105 292 0 7 1545 183 363 50 58 chr1 125888706 125888860 -71306572 - MIRb SINE MIR -64 204 50 7 1545 1418 39 0 11 chr1 125889133 125889315 -71306117 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1545 992 82 0 52 chr1 125889463 125889617 -71305815 + B1_Mus1 SINE Alu 2 147 -1 7 1545 216 317 0 0 chr1 125889781 125889841 -71305591 - B3A SINE B2 -138 60 1 7 1545 1572 231 27 35 chr1 125890114 125890486 -71304946 + MTEb LTR MaLR 4 372 -7 7 1545 2311 197 47 51 chr1 125890486 125890595 -71304837 + RLTR11A2 LTR ERVK 1 101 -426 7 1545 2018 168 39 18 chr1 125890595 125890983 -71304449 + Lx LINE L1 6259 6654 0 7 1545 2311 197 47 51 chr1 125890983 125891402 -71304030 + RLTR11A2 LTR ERVK 102 527 0 7 1545 549 344 42 103 chr1 125891737 125892048 -71303384 + B4 SINE B4 1 292 0 7 1545 546 16 0 0 chr1 125892997 125893060 -71302372 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1545 1940 154 34 83 chr1 125893700 125894110 -71301322 - ORR1B1 LTR MaLR -4 390 1 7 1545 418 280 30 10 chr1 125894110 125894188 -71301244 + ID_B1 SINE B4 91 170 -54 7 1545 353 260 50 10 chr1 125894110 125894211 -71301221 + PB1D10 SINE Alu 12 116 -1 7 1545 22 35 0 0 chr1 125894484 125894513 -71300919 + AT_rich Low_complexity Low_complexity 1 29 0 8 1545 1121 78 0 0 chr1 125894643 125894785 -71300647 + B1_Mus1 SINE Alu 1 142 -6 8 1545 207 0 0 0 chr1 125894788 125894811 -71300621 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1545 292 272 0 0 chr1 125894965 125895046 -71300386 - Lx8 LINE L1 -383 7090 7010 8 1545 626 269 129 24 chr1 125895360 125895615 -71299817 - B4A SINE B4 -8 284 3 8 1545 288 0 0 0 chr1 125896533 125896565 -71298867 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1545 532 277 21 42 chr1 125896621 125896764 -71298668 - B4 SINE B4 -20 272 133 8 1545 270 56 0 0 chr1 125896826 125896862 -71298570 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1545 219 338 38 38 chr1 125896916 125896996 -71298436 + RSINE1 SINE B4 84 163 -2 8 1545 772 300 42 21 chr1 125897950 125898236 -71297196 + B4A SINE B4 1 292 0 8 1545 414 0 0 0 chr1 125899125 125899171 -71296261 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1545 215 114 0 22 chr1 125900984 125901029 -71294403 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1545 849 285 29 75 chr1 125901032 125901401 -71294031 - MTE2a LTR MaLR -44 375 11 8 1545 293 272 0 13 chr1 125901640 125901728 -71293704 + ID4_ SINE ID 6 92 -60 8 1545 400 295 35 111 chr1 125902598 125902620 -71292812 - B2_Mm2 SINE B2 -9 186 163 8 1545 329 62 21 0 chr1 125902620 125902668 -71292764 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1545 580 295 35 111 chr1 125902668 125902843 -71292589 - B3A SINE B2 -29 169 4 8 1545 838 309 79 28 chr1 125903200 125903570 -71291862 - MTE2a LTR MaLR 0 421 25 8 1545 8410 11 0 0 chr1 125903603 125905044 -71290388 - L1Md_A LINE L1 0 6582 5142 8 1545 1109 137 0 6 chr1 125905140 125905316 -71290116 + B2_Mm2 SINE B2 3 177 -18 8 1545 333 0 0 0 chr1 125905318 125905355 -71290077 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1545 669 97 6 62 chr1 125905352 125905528 -71289904 + GA-rich Low_complexity Low_complexity 3 168 0 8 1545 980 23 0 69 chr1 125905555 125905744 -71289688 + (GAA)n Simple_repeat Simple_repeat 2 177 0 8 1545 2338 179 12 21 chr1 125905933 125906010 -71289422 + MTC LTR MaLR 3 79 -342 8 1545 4973 75 3 6 chr1 125906010 125906670 -71288762 + L1Md_F2 LINE L1 5921 6578 -4 8 1545 2338 179 12 21 chr1 125906670 125907015 -71288417 + MTC LTR MaLR 80 421 0 8 1545 275 311 106 35 chr1 125907526 125907696 -71287736 - B3A SINE B2 -16 182 1 8 1545 233 178 0 27 chr1 125910128 125910203 -71285229 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 8 1545 252 0 0 0 chr1 125910994 125911022 -71284410 + (CAA)n Simple_repeat Simple_repeat 3 30 0 8 1545 322 278 70 30 chr1 125911158 125911258 -71284174 - B4A SINE B4 -188 104 1 8 1545 555 283 5 136 chr1 125912635 125912802 -71282630 + RSINE1 SINE B4 5 151 -14 8 1545 402 121 0 0 chr1 125912802 125912868 -71282564 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1545 555 283 5 136 chr1 125912868 125912884 -71282548 + RSINE1 SINE B4 152 164 -1 8 1545 508 388 34 10 chr1 125912892 125913100 -71282332 + B4A SINE B4 80 292 0 8 1545 798 157 0 0 chr1 125913100 125913240 -71282192 + (CA)n Simple_repeat Simple_repeat 1 140 0 8 1545 710 332 30 19 chr1 125913690 125913957 -71281475 + B4A SINE B4 1 270 -22 8 1545 316 257 0 14 chr1 125914580 125914651 -71280781 + B4 SINE B4 21 90 -202 8 1545 1492 41 5 20 chr1 125914716 125914916 -71280516 + L1Md_F2 LINE L1 6386 6582 0 8 1545 339 328 76 8 chr1 125915989 125916061 -71279371 + ID SINE ID 4 84 -140 8 1545 239 327 28 84 chr1 125916061 125916168 -71279264 + B1F2 SINE Alu 1 101 -48 8 1545 204 310 0 14 chr1 125916290 125916362 -71279070 + (TATG)n Simple_repeat Simple_repeat 1 71 0 8 1545 406 321 24 56 chr1 125916366 125916653 -71278779 - B4A SINE B4 -14 278 1 8 1545 257 278 142 127 chr1 125917700 125917968 -71277464 - MTE2b LTR MaLR -105 274 3 8 1545 248 346 29 19 chr1 125918107 125918210 -71277222 + RSINE1 SINE B4 2 105 -60 8 1545 202 290 0 0 chr1 125918410 125918479 -71276953 + (TA)n Simple_repeat Simple_repeat 2 70 0 8 1545 293 380 49 0 chr1 125918585 125918727 -71276705 - B1F2 SINE Alu 0 149 1 8 1545 566 262 97 6 chr1 125918727 125918769 -71276663 - ID_B1 SINE B4 -131 93 37 8 1545 871 248 132 100 chr1 125918769 125919110 -71276322 + ORR1D1 LTR MaLR 1 352 -22 8 1545 28 29 0 0 chr1 125919179 125919214 -71276218 + AT_rich Low_complexity Low_complexity 1 35 0 8 1545 330 26 0 0 chr1 125919315 125919354 -71276078 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1545 253 323 47 16 chr1 125919452 125919581 -71275851 - L1MC LINE L1 -2180 5702 5570 8 1545 2332 165 21 31 chr1 125919712 125920130 -71275302 + Lx3C LINE L1 6561 6974 -2 8 1545 450 94 0 0 chr1 125920133 125920197 -71275235 + (GGA)n Simple_repeat Simple_repeat 3 66 0 8 1545 1425 45 0 0 chr1 125920197 125920374 -71275058 + (GGAGAA)n Simple_repeat Simple_repeat 1 177 0 8 1545 288 200 0 0 chr1 125921069 125921139 -71274293 + (TA)n Simple_repeat Simple_repeat 2 71 0 8 1545 402 183 23 12 chr1 125921847 125922018 -71273414 + (TG)n Simple_repeat Simple_repeat 2 174 0 8 1545 297 235 24 12 chr1 125922030 125922112 -71273320 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1545 416 147 0 19 chr1 125923300 125923404 -71272028 + (TCTCTG)n Simple_repeat Simple_repeat 2 103 0 8 1545 300 27 0 0 chr1 125923405 125923442 -71271990 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1545 265 267 54 75 chr1 125923610 125923703 -71271729 + B2_Mm2 SINE B2 3 93 -102 8 1545 444 93 0 0 chr1 125924163 125924238 -71271194 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 1545 827 149 0 7 chr1 125924237 125924392 -71271040 + (TA)n Simple_repeat Simple_repeat 1 154 0 8 1545 441 319 72 0 chr1 125924667 125924833 -71270599 + Lx6 LINE L1 7199 7376 -84 8 1545 351 0 0 0 chr1 125925008 125925047 -71270385 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1545 228 321 58 23 chr1 125925744 125925830 -71269602 - B4A SINE B4 -199 93 5 8 1545 296 300 25 54 chr1 125925905 125926157 -71269275 - L1M2 LINE L1 -422 5875 5630 8 1545 180 0 0 0 chr1 125926202 125926222 -71269210 + (CAT)n Simple_repeat Simple_repeat 2 21 0 8 1545 457 323 0 31 chr1 125926236 125926396 -71269036 - RSINE1 SINE B4 -8 157 3 8 1545 334 148 2 10 chr1 125926404 125926463 -71268969 - L1M2 LINE L1 -821 5479 5428 8 1545 215 0 67 0 chr1 125926463 125926493 -71268939 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1545 225 249 16 85 chr1 125926493 125926622 -71268810 - L1M2 LINE L1 -872 5428 5304 8 1545 401 281 29 15 chr1 125926678 125926815 -71268617 - L1M2 LINE L1 -900 5243 5105 8 1545 365 267 103 0 chr1 125926995 125927111 -71268321 + B3A SINE B2 1 128 -70 8 1545 355 301 62 44 chr1 125927141 125927301 -71268131 - RSINE1 SINE B4 0 165 3 8 1545 797 281 81 78 chr1 125927810 125928181 -71267251 - MTE2a LTR MaLR -5 374 3 8 1545 487 306 40 7 chr1 125928229 125928377 -71267055 + B3 SINE B2 59 211 -5 8 1545 690 304 48 45 chr1 125928712 125929001 -71266431 + B4A SINE B4 3 292 0 8 1545 255 31 0 0 chr1 125929171 125929203 -71266229 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 8 1545 744 288 6 0 chr1 125929884 125930047 -71265385 + B4 SINE B4 1 164 -128 8 1545 333 68 0 0 chr1 125930202 125930246 -71265186 + (TAA)n Simple_repeat Simple_repeat 3 46 0 8 1545 558 68 0 0 chr1 125930325 125930413 -71265019 - L1_Mus3 LINE L1 0 6638 6551 8 1545 441 116 0 0 chr1 125930581 125930650 -71264782 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 8 1545 1459 184 92 0 chr1 125930650 125930943 -71264489 + IAPEY3_LTR LTR ERVK 1 320 -12 8 1545 189 0 0 0 chr1 125930948 125930969 -71264463 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1545 881 301 43 35 chr1 125930973 125931231 -71264201 - B4 SINE B4 -20 272 13 8 1545 452 93 13 0 chr1 125933317 125933392 -71262040 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1545 346 345 28 103 chr1 125933506 125933797 -71261635 + B4 SINE B4 24 292 0 8 1545 480 165 0 0 chr1 125933798 125933844 -71261588 + polypurine Low_complexity Low_complexity 2 47 0 8 1545 951 112 0 0 chr1 125933844 125934023 -71261409 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 8 1545 480 165 0 0 chr1 125934023 125934103 -71261329 + GA-rich Low_complexity Low_complexity 48 127 0 8 1545 1680 172 38 19 chr1 125934917 125935236 -71260196 + Lx2 LINE L1 6584 6908 -89 8 1545 21 0 0 0 chr1 125935618 125935639 -71259793 + AT_rich Low_complexity Low_complexity 1 21 0 8 1545 938 316 47 63 chr1 125935828 125936190 -71259242 - MTE2a LTR MaLR -14 365 10 8 1545 25 0 0 0 chr1 125936502 125936527 -71258905 + AT_rich Low_complexity Low_complexity 1 25 0 8 1545 23 33 0 0 chr1 125936634 125936664 -71258768 + AT_rich Low_complexity Low_complexity 1 30 0 8 1545 729 113 148 0 chr1 125936711 125936826 -71258606 + B1_Mus1 SINE Alu 1 132 -16 8 1545 999 145 0 0 chr1 125936826 125936998 -71258434 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 8 1545 378 226 137 0 chr1 125937019 125937143 -71258289 + B1F SINE Alu 1 141 -8 8 1545 341 303 198 44 chr1 125937156 125937408 -71258024 + B4A SINE B4 1 291 -1 8 1545 459 52 0 0 chr1 125938214 125938272 -71257160 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 8 1545 306 73 0 0 chr1 125942510 125942551 -71252881 + (CAG)n Simple_repeat Simple_repeat 3 43 0 8 1545 252 0 0 0 chr1 125942989 125943017 -71252415 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1545 227 194 14 56 chr1 125943522 125943593 -71251839 - B4 SINE B4 -214 78 11 8 1545 21 0 0 0 chr1 125944963 125944984 -71250448 + AT_rich Low_complexity Low_complexity 1 21 0 8 1545 681 321 37 4 chr1 125945146 125945415 -71250017 + B4A SINE B4 1 278 -14 8 1545 693 66 0 0 chr1 125945438 125945529 -71249903 + (CA)n Simple_repeat Simple_repeat 1 91 0 8 1545 183 156 0 0 chr1 125946794 125946826 -71248606 + A-rich Low_complexity Low_complexity 1 32 0 8 1545 279 0 0 0 chr1 125946894 125946925 -71248507 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1545 366 91 0 0 chr1 125947334 125947389 -71248043 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1545 410 325 157 0 chr1 125947506 125947697 -71247735 - B4A SINE B4 -2 290 70 9 1545 376 275 189 8 chr1 125947798 125947930 -71247502 - RSINE1 SINE B4 -5 160 5 9 1545 194 0 0 37 chr1 125948171 125948198 -71247234 + (TTA)n Simple_repeat Simple_repeat 2 27 0 9 1545 1107 280 55 25 chr1 125948380 125948743 -71246689 + MTE2a LTR MaLR 3 376 -3 9 1545 818 148 33 14 chr1 125949136 125949520 -71245912 + (TCTA)n Simple_repeat Simple_repeat 1 391 0 9 1545 200 313 0 15 chr1 125949652 125949720 -71245712 + GA-rich Low_complexity Low_complexity 3 69 0 9 1545 276 298 150 15 chr1 125950657 125950790 -71244642 + MTD LTR MaLR 10 160 -259 9 1545 458 379 44 35 chr1 125951070 125951297 -71244135 + LTR40b LTR ERVL 178 406 -56 9 1545 589 194 12 0 chr1 125951477 125951637 -71243795 + GA-rich Low_complexity Low_complexity 1 162 0 9 1545 330 358 66 0 chr1 125951709 125951846 -71243586 - B4 SINE B4 -145 147 2 9 1545 282 56 0 0 chr1 125952227 125952263 -71243169 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1545 428 297 80 25 chr1 125952358 125952520 -71242912 - B4A SINE B4 -91 201 31 9 1545 379 312 125 0 chr1 125952699 125952843 -71242589 + RSINE1 SINE B4 4 165 0 9 1545 342 0 0 0 chr1 125952847 125952885 -71242547 + (TC)n Simple_repeat Simple_repeat 2 39 0 9 1545 616 111 0 18 chr1 125952885 125952994 -71242438 + (TA)n Simple_repeat Simple_repeat 1 108 0 9 1545 283 432 0 7 chr1 125953085 125953234 -71242198 + MER58A DNA MER1_type 23 170 -54 9 1545 242 193 0 17 chr1 125953235 125953293 -71242139 + GA-rich Low_complexity Low_complexity 1 57 0 9 1545 771 267 10 60 chr1 125953866 125954065 -71241367 + B3A SINE B2 6 194 -4 9 1545 183 80 0 0 chr1 125954148 125954173 -71241259 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1545 670 266 199 16 chr1 125954204 125954460 -71240972 - ORR1E LTR MaLR -44 315 13 9 1545 405 0 0 0 chr1 125955651 125955696 -71239736 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1545 342 0 0 0 chr1 125955775 125955813 -71239619 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1545 221 264 0 0 chr1 125955880 125955933 -71239499 + MIRb SINE MIR 208 260 -8 9 1545 21 0 0 0 chr1 125956326 125956347 -71239085 + AT_rich Low_complexity Low_complexity 1 21 0 9 1545 279 239 28 0 chr1 125957028 125957099 -71238333 - MIR SINE MIR 0 262 190 9 1545 261 0 0 0 chr1 125957147 125957176 -71238256 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1545 203 133 22 0 chr1 125957362 125957407 -71238025 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 9 1545 488 347 85 22 chr1 125957730 125958001 -71237431 - MLT1A0 LTR MaLR -77 288 1 9 1545 267 31 0 0 chr1 125958339 125958371 -71237061 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1545 502 321 25 13 chr1 125958399 125958557 -71236875 - RSINE1 SINE B4 -3 162 3 9 1545 34 0 0 0 chr1 125958587 125958621 -71236811 + AT_rich Low_complexity Low_complexity 1 34 0 9 1545 599 144 42 0 chr1 125958774 125958941 -71236491 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 9 1545 429 20 0 0 chr1 125959009 125959059 -71236373 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 9 1545 434 149 0 11 chr1 125959232 125959320 -71236112 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1546 690 314 37 64 chr1 125960566 125961044 -71234388 + RLTR11A2 LTR ERVK 1 450 -78 9 1546 696 313 10 93 chr1 125961709 125962022 -71233410 - B4 SINE B4 -3 289 3 9 1546 571 304 24 10 chr1 125962492 125962698 -71232734 - B3 SINE B2 -7 209 1 9 1546 256 339 120 46 chr1 125962789 125963073 -71232359 + L2 LINE L2 2421 2725 -694 9 1546 195 191 0 0 chr1 125963135 125963198 -71232234 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1546 407 266 52 52 chr1 125963705 125963840 -71231592 + MTEb LTR MaLR 1 135 -244 9 1546 698 269 6 0 chr1 125963854 125964010 -71231422 + MTEb LTR MaLR 208 364 -15 9 1546 271 302 103 10 chr1 125964226 125964323 -71231109 - PB1D9 SINE Alu -7 113 8 9 1546 288 91 0 0 chr1 125964541 125964585 -71230847 + (TAG)n Simple_repeat Simple_repeat 1 44 0 9 1546 681 302 48 10 chr1 125965241 125965448 -71229984 - B3A SINE B2 0 216 2 9 1546 611 333 50 0 chr1 125965889 125966069 -71229363 + B3A SINE B2 6 194 -4 9 1546 567 278 16 62 chr1 125966249 125966441 -71228991 + B3A SINE B2 1 183 -15 9 1546 447 19 0 0 chr1 125966456 125966508 -71228924 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1546 318 67 0 0 chr1 125967338 125967383 -71228049 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1546 377 355 142 8 chr1 125967431 125967670 -71227762 - B4 SINE B4 -11 281 11 9 1546 629 263 161 0 chr1 125967696 125967882 -71227550 - ID_B1 SINE B4 -8 216 1 9 1546 225 333 50 75 chr1 125968688 125968715 -71226717 - PB1D10 SINE Alu 0 117 95 9 1546 333 0 0 0 chr1 125968715 125968752 -71226680 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1546 225 333 50 75 chr1 125968752 125968844 -71226588 - PB1D10 SINE Alu -23 94 2 9 1546 607 310 53 0 chr1 125968844 125968927 -71226505 - B4 SINE B4 -199 93 2 9 1546 201 254 0 0 chr1 125968977 125969032 -71226400 + CT-rich Low_complexity Low_complexity 2 56 0 9 1546 278 267 71 71 chr1 125969040 125969153 -71226279 - PB1D9 SINE Alu 0 120 8 9 1546 515 355 11 0 chr1 125969922 125970108 -71225324 + B3A SINE B2 1 188 -10 9 1546 218 167 0 40 chr1 125970114 125970164 -71225268 + GA-rich Low_complexity Low_complexity 3 50 0 9 1546 461 17 17 0 chr1 125970165 125970223 -71225209 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1546 523 252 98 56 chr1 125970237 125970380 -71225052 + B1_Mur1 SINE Alu 1 149 0 9 1546 243 79 0 0 chr1 125970440 125970478 -71224954 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1546 227 263 18 0 chr1 125971109 125971166 -71224266 + GA-rich Low_complexity Low_complexity 4 61 0 9 1546 296 24 0 24 chr1 125972725 125972767 -71222665 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 9 1546 470 306 33 50 chr1 125972797 125972979 -71222453 + B4A SINE B4 4 182 -110 9 1546 642 26 0 0 chr1 125973101 125973177 -71222255 + (TA)n Simple_repeat Simple_repeat 2 77 0 9 1546 544 322 81 22 chr1 125973666 125973939 -71221493 + B4A SINE B4 3 291 -1 9 1546 438 383 28 0 chr1 125974774 125974988 -71220444 + ID_B1 SINE B4 3 222 -2 9 1546 211 275 12 12 chr1 125975119 125975200 -71220232 + (CAAA)n Simple_repeat Simple_repeat 4 84 0 9 1546 507 60 0 0 chr1 125975779 125975846 -71219586 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1546 419 35 18 0 chr1 125975870 125975927 -71219505 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 9 1546 430 178 44 66 chr1 125975989 125976170 -71219262 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 9 1546 488 59 0 14 chr1 125976189 125976258 -71219174 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 9 1546 219 146 20 40 chr1 125976754 125976804 -71218628 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 9 1546 443 268 10 0 chr1 125976838 125976935 -71218497 - B3A SINE B2 -100 98 1 9 1546 2704 122 13 0 chr1 125977314 125977709 -71217723 + MTB LTR MaLR 1 400 0 9 1546 354 23 0 0 chr1 125977866 125977909 -71217523 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1546 435 311 90 50 chr1 125977936 125978136 -71217296 - B4 SINE B4 -53 239 32 9 1546 474 207 4 1 chr1 125978428 125978523 -71216909 - B4 SINE B4 -65 100 3 9 1546 218 29 59 0 chr1 125979071 125979105 -71216327 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1546 397 62 15 15 chr1 125979247 125979313 -71216119 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 9 1546 837 199 0 0 chr1 125979432 125979608 -71215824 + CT-rich Low_complexity Low_complexity 2 177 0 9 1546 707 123 0 0 chr1 125979698 125979804 -71215628 - B2_Mm1t SINE B2 -2 191 86 9 1546 1190 121 6 0 chr1 125979816 125979989 -71215443 - B2_Mm1a SINE B2 -18 175 2 9 1546 1015 314 79 17 chr1 125980799 125981413 -71214019 + L1_Mur3 LINE L1 64 761 -6967 9 1546 305 200 0 13 chr1 125981550 125981626 -71213806 + L1_Mur3 LINE L1 1128 1202 -6526 9 1546 2242 168 116 12 chr1 125981615 125982122 -71213310 + L1_Mur3 LINE L1 2324 2883 -2997 9 1546 36506 31 0 7 chr1 125982129 125987277 -71208155 + L1Md_A LINE L1 481 5586 -297 9 1546 8352 32 1 0 chr1 125987278 125988269 -71207163 + L1Md_A LINE L1 5588 6579 -3 9 1546 4555 214 57 108 chr1 125988340 125988852 -71206580 + L1_Mur3 LINE L1 2865 3371 -2506 9 1546 531 0 0 0 chr1 125988852 125988911 -71206521 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 9 1546 4815 178 62 23 chr1 125988911 125988949 -71206483 + L1_Mur3 LINE L1 3372 3409 -2471 9 1546 524 146 0 12 chr1 125988952 125989035 -71206397 - B1_Mus1 SINE Alu -65 83 2 9 1546 341 276 19 58 chr1 125989035 125989053 -71206379 - B4 SINE B4 -120 169 73 9 1546 4815 178 62 23 chr1 125989053 125990058 -71205374 + L1_Mur3 LINE L1 3410 4438 -1442 9 1546 594 312 26 80 chr1 125990062 125990288 -71205144 - B3A SINE B2 -2 214 1 9 1546 254 311 126 22 chr1 125990359 125990494 -71204938 - B1F SINE Alu 0 149 1 9 1546 556 340 0 13 chr1 125990583 125990732 -71204700 + RSINE1 SINE B4 9 155 -10 9 1546 427 301 53 181 chr1 125990843 125991070 -71204362 + B4A SINE B4 95 292 0 9 1546 687 225 58 29 chr1 125991888 125992245 -71203187 + RMER10A LTR ERVL 13 430 -12 9 1546 1062 70 19 0 chr1 125992316 125992473 -71202959 + (GA)n Simple_repeat Simple_repeat 2 161 0 9 1546 627 14 0 0 chr1 125992473 125992544 -71202888 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 9 1546 499 364 18 24 chr1 125992645 125992811 -71202621 - RSINE1 SINE B4 0 165 1 9 1546 267 133 0 0 chr1 125993341 125993386 -71202046 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 9 1546 217 256 200 0 chr1 125993661 125993751 -71201681 + RSINE1 SINE B4 50 157 -8 9 1546 384 288 51 0 chr1 125993881 125993999 -71201433 - MER2 DNA MER2_type -68 277 154 9 1546 1442 261 58 19 chr1 125994042 125994421 -71201011 - MTD LTR MaLR -23 396 3 9 1546 327 312 158 24 chr1 125994590 125994843 -71200589 - B4A SINE B4 -3 289 3 9 1546 1062 88 0 33 chr1 125995023 125995175 -71200257 - B1_Mm SINE Alu 0 147 1 9 1546 991 49 7 7 chr1 125995213 125995373 -71200059 + L1Md_F3 LINE L1 6441 6584 0 1 1546 991 49 7 7 chr1 125995373 125995396 -71200036 + L1Md_F3 LINE L1 6560 6583 -1 1 1546 674 94 0 0 chr1 125995998 125996094 -71199338 - L1Md_F2 LINE L1 -638 5944 5849 1 1546 4726 72 3 19 chr1 125996083 125996724 -71198708 + L1Md_F2 LINE L1 5928 6558 -24 1 1546 242 115 65 16 chr1 125996735 125996797 -71198635 + (TAAA)n Simple_repeat Simple_repeat 1 65 0 1 1546 610 309 253 10 chr1 125998184 125998577 -71196855 + RMER5 LTR ERV1 43 531 -3 1 1546 1234 147 18 1 chr1 125998635 125998877 -71196555 - ORR1B1 LTR MaLR 0 394 85 1 1546 504 213 102 65 chr1 125998875 125998897 -71196535 - ORR1B1 LTR MaLR -133 196 174 1 1546 333 0 0 0 chr1 125998897 125998934 -71196498 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1546 504 213 102 65 chr1 125998934 125999097 -71196335 - ORR1B1 LTR MaLR -156 173 5 1 1546 335 248 217 51 chr1 125999729 125999886 -71195546 + B3A SINE B2 1 183 -15 1 1546 21 0 0 0 chr1 126001845 126001866 -71193566 + AT_rich Low_complexity Low_complexity 1 21 0 1 1546 3566 256 51 56 chr1 126001898 126003428 -71192004 - Lx5 LINE L1 -7 7043 5520 2 1546 3150 200 11 0 chr1 126003420 126004061 -71191371 + L1_Mur2 LINE L1 4939 5586 -291 3 1546 358 144 70 30 chr1 126004078 126004178 -71191254 + L1_Mur3 LINE L1 3652 3755 -2125 4 1546 4316 90 2 0 chr1 126004169 126004768 -71190664 + L1_Mus3 LINE L1 4906 5505 -378 5 1546 7286 84 5 14 chr1 126004764 126005779 -71189653 + L1_Mus3 LINE L1 5632 6637 -1 5 1546 1138 185 52 11 chr1 126005827 126006095 -71189337 + L1_Mur3 LINE L1 3801 4079 -1801 4 1546 5976 219 42 15 chr1 126006138 126007149 -71188283 - L1_Mur2 LINE L1 -2785 3092 2052 6 1546 311 105 18 0 chr1 126007149 126007206 -71188226 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1546 5976 219 42 15 chr1 126007206 126007733 -71187699 - L1_Mur2 LINE L1 -3826 2051 1512 6 1546 186 224 0 0 chr1 126007865 126007914 -71187518 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 8 1546 212 100 0 24 chr1 126008622 126008663 -71186769 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1546 653 163 7 0 chr1 126008687 126008822 -71186610 + GA-rich Low_complexity Low_complexity 2 137 0 1 1546 658 321 38 0 chr1 126009429 126009613 -71185819 + ID_B1 SINE B4 6 196 -28 1 1546 419 0 20 0 chr1 126009935 126009986 -71185446 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 1 1546 192 179 0 0 chr1 126010200 126010239 -71185193 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 1 1546 21 57 0 0 chr1 126010480 126010515 -71184917 + AT_rich Low_complexity Low_complexity 1 35 0 1 1546 425 340 13 20 chr1 126010739 126010889 -71184543 - B1_Mur2 SINE Alu 0 149 1 1 1546 493 273 90 30 chr1 126011003 126011203 -71184229 - Lx8 LINE L1 -2 7471 7260 1 1546 224 328 112 48 chr1 126011375 126011547 -71183885 - MIRc SINE MIR -89 179 2 1 1546 203 235 56 56 chr1 126011760 126011832 -71183600 - MIRc SINE MIR -112 156 85 1 1546 380 292 72 39 chr1 126011890 126012043 -71183389 - MER20 DNA MER1_type -7 212 55 1 1546 294 29 0 0 chr1 126012175 126012210 -71183222 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 1546 1071 116 0 0 chr1 126012210 126012357 -71183075 - B1_Mus1 SINE Alu 0 148 2 2 1546 276 206 0 27 chr1 126013063 126013138 -71182294 + Lx9 LINE L1 7571 7643 -1 2 1546 306 0 0 0 chr1 126013204 126013238 -71182194 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1546 383 254 49 41 chr1 126013238 126013361 -71182071 - MER2 DNA MER2_type -131 214 91 2 1546 357 304 97 20 chr1 126013713 126013908 -71181524 - B3 SINE B2 -3 213 4 2 1546 267 299 45 45 chr1 126014630 126014784 -71180648 + Lx8 LINE L1 7318 7471 -2 2 1546 195 114 0 0 chr1 126014917 126014952 -71180480 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 2 1546 1049 269 104 39 chr1 126015137 126015493 -71179939 + MTE2b LTR MaLR 1 379 0 2 1546 36 0 0 0 chr1 126015652 126015688 -71179744 + AT_rich Low_complexity Low_complexity 1 36 0 2 1546 1380 157 93 9 chr1 126016782 126016834 -71178598 + RLTR44E LTR ERVK 101 159 -293 3 1546 387 0 0 0 chr1 126016834 126016877 -71178555 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1546 1380 157 93 9 chr1 126016877 126017146 -71178286 + RLTR44E LTR ERVK 160 448 -4 3 1546 428 288 69 145 chr1 126017194 126017533 -71177899 + RMER20A LTR ERVK 212 513 -114 3 1546 257 275 113 62 chr1 126017589 126017686 -71177746 + RMER20A LTR ERVK 504 605 -22 3 1546 990 286 76 35 chr1 126017795 126018175 -71177257 + MTE2a LTR MaLR 18 405 -14 3 1546 1150 273 19 47 chr1 126018261 126018626 -71176806 + ORR1E LTR MaLR 5 359 0 3 1546 1060 309 56 15 chr1 126018672 126019010 -71176422 + ORR1E LTR MaLR 3 354 -5 3 1546 302 404 78 5 chr1 126019005 126019209 -71176223 + LTR16A LTR ERVL 177 395 -56 3 1546 895 296 109 53 chr1 126019355 126019434 -71175998 + MTE2b LTR MaLR 3 82 -297 3 1546 2470 68 9 6 chr1 126019434 126019773 -71175659 + L1Md_F2 LINE L1 6241 6580 -2 3 1546 980 133 0 0 chr1 126019782 126019917 -71175515 + B1_Mus2 SINE Alu 1 135 -12 3 1546 432 37 0 0 chr1 126019917 126019971 -71175461 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 4 1546 895 296 109 53 chr1 126019971 126020160 -71175272 + MTE2b LTR MaLR 89 285 -94 3 1546 4870 57 0 13 chr1 126020160 126020784 -71174648 + L1Md_F2 LINE L1 5967 6582 0 4 1546 895 296 109 53 chr1 126020784 126020860 -71174572 + MTE2b LTR MaLR 286 377 -2 3 1546 382 188 21 0 chr1 126022422 126022518 -71172914 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 4 1546 628 330 65 43 chr1 126022838 126023117 -71172315 - B4A SINE B4 0 292 8 4 1546 1957 52 3 105 chr1 126024060 126024364 -71171068 - L1_Mus2 LINE L1 -1 6565 6293 4 1546 1165 30 0 0 chr1 126024364 126024498 -71170934 + L1_Mus2 LINE L1 6166 6299 -267 4 1546 713 208 0 6 chr1 126024547 126024716 -71170716 + CT-rich Low_complexity Low_complexity 3 170 0 4 1546 262 45 22 22 chr1 126024791 126024836 -71170596 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1546 380 274 71 0 chr1 126024842 126024926 -71170506 + B3 SINE B2 1 90 -126 4 1546 579 15 0 0 chr1 126024928 126024996 -71170436 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1546 393 75 0 0 chr1 126025622 126025675 -71169757 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1546 567 0 0 0 chr1 126025675 126025737 -71169695 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1546 362 401 35 0 chr1 126025842 126025984 -71169448 - RSINE1 SINE B4 0 165 19 5 1546 1035 236 43 4 chr1 126025999 126026233 -71169199 - MTD LTR MaLR 0 419 177 5 1546 467 45 15 0 chr1 126026236 126026302 -71169130 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1546 480 276 81 81 chr1 126026942 126027139 -71168293 - B3A SINE B2 0 198 2 5 1546 483 294 66 6 chr1 126027467 126027648 -71167784 - B3A SINE B2 -5 193 2 5 1546 640 249 10 84 chr1 126027925 126028127 -71167305 + B3A SINE B2 4 190 -8 5 1546 333 228 22 112 chr1 126028783 126028872 -71166560 - RSINE1 SINE B4 0 165 85 5 1546 185 159 23 0 chr1 126028887 126028931 -71166501 + CT-rich Low_complexity Low_complexity 1 45 0 5 1546 400 335 58 6 chr1 126028936 126029107 -71166325 - B3A SINE B2 -16 182 3 5 1546 615 306 45 94 chr1 126029227 126029451 -71165981 - B3A SINE B2 -2 214 2 6 1546 207 0 0 0 chr1 126030296 126030319 -71165113 + (CCTAT)n Simple_repeat Simple_repeat 3 25 0 6 1546 429 343 90 15 chr1 126030369 126030570 -71164862 - B3 SINE B2 0 216 1 6 1546 222 331 136 35 chr1 126030669 126030859 -71164573 + MIRb SINE MIR 9 228 -40 6 1546 401 414 50 4 chr1 126030921 126031159 -71164273 + Tigger7 DNA MER2_type 24 272 -2219 6 1546 980 251 157 15 chr1 126031274 126031598 -71163834 + ORR1D1 LTR MaLR 3 372 -2 6 1546 406 194 71 10 chr1 126031598 126031697 -71163735 + ORR1E LTR MaLR 270 374 0 6 1546 1591 259 49 53 chr1 126031697 126032284 -71163148 + ORR1E-int LTR MaLR 1 585 -785 6 1546 1096 302 86 39 chr1 126032315 126032489 -71162943 + ORR1E LTR MaLR 1 175 -184 6 1546 495 0 0 0 chr1 126032489 126032544 -71162888 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1546 1096 302 86 39 chr1 126032544 126032706 -71162726 + ORR1E LTR MaLR 176 353 -6 6 1546 272 290 0 0 chr1 126032719 126032788 -71162644 + ID_B1 SINE B4 152 220 -4 6 1546 397 293 60 26 chr1 126032784 126032935 -71162497 + Tigger7 DNA MER2_type 2236 2391 -100 6 1546 3351 114 4 2 chr1 126033067 126033557 -71161875 - L1_Mus3 LINE L1 -7 6631 6141 6 1546 2051 48 0 0 chr1 126033556 126033807 -71161625 - L1Md_T LINE L1 0 6582 6332 7 1546 361 196 28 28 chr1 126035164 126035342 -71160090 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1546 441 284 91 165 chr1 126035389 126035794 -71159638 - MTE2a LTR MaLR 0 379 5 7 1546 317 130 0 53 chr1 126035794 126035851 -71159581 + B1_Mur2 SINE Alu 96 149 0 7 1546 376 331 11 62 chr1 126036604 126036817 -71158615 - B3A SINE B2 0 216 13 7 1546 5038 47 6 0 chr1 126036870 126037491 -71157941 - L1Md_F2 LINE L1 -1 6581 5957 7 1546 35375 35 0 0 chr1 126037920 126043322 -71152110 + L1Md_T LINE L1 92 5589 -297 7 1546 8937 8 0 0 chr1 126043322 126044377 -71151055 + L1Md_T LINE L1 5590 6585 0 7 1546 279 54 0 0 chr1 126044617 126044654 -71150778 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1546 537 333 10 62 chr1 126045724 126045932 -71149500 - B3A SINE B2 0 198 2 7 1546 651 26 0 0 chr1 126046107 126046184 -71149248 + (TATATG)n Simple_repeat Simple_repeat 5 81 0 7 1546 596 330 23 18 chr1 126046936 126047155 -71148277 - ID_B1 SINE B4 0 224 5 8 1546 237 362 79 75 chr1 126047219 126047446 -71147986 + MLT1G1 LTR MaLR 282 509 -70 8 1546 436 260 0 13 chr1 126047545 126047862 -71147570 + (CA)n Simple_repeat Simple_repeat 1 312 0 8 1546 1012 191 22 43 chr1 126047974 126048204 -71147228 + URR1A DNA MER1_type 1 225 -1 8 1546 32 75 0 0 chr1 126048562 126048629 -71146803 + AT_rich Low_complexity Low_complexity 1 67 0 8 1546 1046 296 50 22 chr1 126049081 126049399 -71146033 - MTE2b LTR MaLR -3 376 50 8 1546 225 152 0 80 chr1 126049716 126049766 -71145666 - L1Md_T LINE L1 -946 5636 5591 8 1546 1193 308 45 43 chr1 126050408 126050900 -71144532 + RMER5 LTR ERV1 24 516 -18 8 1546 789 293 68 4 chr1 126051459 126051709 -71143723 + B4 SINE B4 2 267 -25 8 1546 282 368 9 0 chr1 126051731 126051837 -71143595 + (CA)n Simple_repeat Simple_repeat 2 108 0 8 1546 1092 89 0 0 chr1 126051913 126052093 -71143339 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 9 1546 504 45 0 0 chr1 126052093 126052160 -71143272 + (CAGG)n Simple_repeat Simple_repeat 3 69 0 9 1546 1296 73 0 0 chr1 126052160 126052337 -71143095 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 9 1546 975 269 65 79 chr1 126052639 126053007 -71142425 + MTE2a LTR MaLR 3 365 -14 9 1546 319 278 60 46 chr1 126053007 126053158 -71142274 + L1MEg LINE L1 1075 1227 -4857 9 1546 523 273 81 11 chr1 126053541 126053715 -71141717 - MER58A DNA MER1_type 0 224 39 9 1546 320 267 0 0 chr1 126053987 126054047 -71141385 + MTE2a LTR MaLR 26 85 -294 9 1546 819 290 38 54 chr1 126054073 126054343 -71141089 + MTE2a LTR MaLR 71 339 -40 9 1546 2445 65 3 3 chr1 126054343 126054667 -71140765 - L1_Mus1 LINE L1 -1 6566 6243 9 1546 819 290 38 54 chr1 126054667 126054710 -71140722 + MTE2a LTR MaLR 340 379 0 9 1546 690 234 186 0 chr1 126054895 126055083 -71140349 - ORR1D1 LTR MaLR -28 346 124 9 1546 2861 287 93 66 chr1 126055126 126055830 -71139602 - ORR1D1-int LTR MaLR 0 1509 768 9 1546 446 211 0 34 chr1 126055830 126055948 -71139484 - L1Md_F3 LINE L1 -3 6581 6468 9 1546 3114 263 43 17 chr1 126055948 126056711 -71138721 - ORR1D1-int LTR MaLR -602 768 3 9 1546 818 227 186 17 chr1 126056713 126056950 -71138482 - ORR1D1 LTR MaLR 0 374 98 9 1546 22 35 0 0 chr1 126057522 126057551 -71137881 + AT_rich Low_complexity Low_complexity 1 29 0 1 1546 25 65 0 0 chr1 126057617 126057663 -71137769 + AT_rich Low_complexity Low_complexity 1 46 0 1 1546 459 78 0 0 chr1 126058472 126058536 -71136896 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1546 683 354 56 21 chr1 126058589 126058929 -71136503 + ORR1E LTR MaLR 8 359 0 1 1546 899 337 60 11 chr1 126059576 126059927 -71135505 - MTE2b LTR MaLR -9 370 3 1 1546 219 157 0 0 chr1 126060283 126060334 -71135098 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1546 246 246 15 15 chr1 126060337 126060403 -71135029 + L1M5 LINE L1 5516 5581 -543 1 1546 269 324 0 0 chr1 126060646 126060720 -71134712 + B4 SINE B4 2 75 -217 1 1546 33767 64 7 8 chr1 126060720 126065878 -71129554 + L1Md_F2 LINE L1 441 5586 -297 1 1546 7681 63 2 24 chr1 126065879 126066895 -71128537 + L1Md_F2 LINE L1 5588 6581 -1 1 1546 747 270 4 75 chr1 126066928 126067156 -71128276 + B4 SINE B4 64 275 -17 1 1546 288 336 9 9 chr1 126067170 126067284 -71128148 + (CATA)n Simple_repeat Simple_repeat 3 116 0 1 1546 288 319 0 41 chr1 126067954 126068052 -71127380 - B4 SINE B4 -103 189 96 1 1546 546 16 0 0 chr1 126068318 126068381 -71127051 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1546 589 209 39 0 chr1 126068396 126068525 -71126907 - Lx8 LINE L1 -511 6962 6829 1 1546 564 15 0 0 chr1 126069081 126069146 -71126286 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1546 290 269 0 0 chr1 126069731 126069798 -71125634 + tRNA-Met tRNA tRNA 1 67 -9 1 1546 824 314 15 40 chr1 126069816 126070088 -71125344 + B4 SINE B4 3 267 -25 1 1546 903 19 0 0 chr1 126070091 126070196 -71125236 + (CA)n Simple_repeat Simple_repeat 1 105 0 1 1546 603 0 0 0 chr1 126070243 126070310 -71125122 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1546 243 61 0 0 chr1 126070856 126070889 -71124543 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1546 472 228 174 19 chr1 126072022 126072183 -71123249 - B3A SINE B2 -12 186 1 1 1546 334 273 104 7 chr1 126072234 126072378 -71123054 + L1MA8 LINE L1 5104 5261 -882 1 1546 389 247 134 5 chr1 126072390 126072577 -71122855 + L1MA8 LINE L1 5266 5476 -713 1 1546 375 327 156 31 chr1 126072594 126072850 -71122582 + B4A SINE B4 5 292 0 1 1546 1690 214 54 22 chr1 126072988 126073395 -71122037 + RMER10A LTR ERVL 6 425 -17 1 1546 473 298 64 59 chr1 126073395 126073613 -71121819 + L1MA8 LINE L1 5573 5789 -502 1 1546 723 24 0 0 chr1 126073613 126073698 -71121734 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1546 473 307 61 56 chr1 126073698 126073941 -71121491 + L1MA8 LINE L1 5790 6036 -255 1 1546 676 221 52 0 chr1 126073992 126074128 -71121304 + B1_Mus1 SINE Alu 6 148 0 1 1546 223 169 46 0 chr1 126074129 126074194 -71121238 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 1 1546 297 325 52 0 chr1 126074353 126074430 -71121002 + ID SINE ID 2 82 -142 1 1546 626 183 0 13 chr1 126074530 126074685 -71120747 + (TCTCTG)n Simple_repeat Simple_repeat 4 156 0 1 1546 326 301 0 0 chr1 126075052 126075135 -71120297 + B2_Mm2 SINE B2 2 84 -111 1 1546 1927 188 19 40 chr1 126075171 126075547 -71119885 - ORR1C1 LTR MaLR 0 378 11 1 1546 38 0 0 0 chr1 126075641 126075679 -71119753 + AT_rich Low_complexity Low_complexity 1 38 0 1 1546 203 61 30 0 chr1 126075970 126076003 -71119429 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1546 357 326 99 33 chr1 126076029 126076267 -71119165 - B4A SINE B4 -6 286 35 1 1546 200 185 55 18 chr1 126076327 126076382 -71119050 + T-rich Low_complexity Low_complexity 1 57 0 1 1546 247 304 0 25 chr1 126076758 126076839 -71118593 - B1_Mm SINE Alu 0 147 69 1 1546 241 275 0 0 chr1 126077088 126077157 -71118275 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1546 207 186 0 0 chr1 126077157 126077200 -71118232 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1546 27 81 0 0 chr1 126077836 126077898 -71117534 + AT_rich Low_complexity Low_complexity 1 62 0 1 1546 21 71 0 0 chr1 126078095 126078137 -71117295 + AT_rich Low_complexity Low_complexity 1 42 0 1 1546 731 106 14 21 chr1 126078534 126078678 -71116754 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 1 1546 30 0 0 0 chr1 126078875 126078905 -71116527 + AT_rich Low_complexity Low_complexity 1 30 0 1 1546 602 271 28 60 chr1 126079298 126079534 -71115898 + ORR1E LTR MaLR 6 209 -161 1 1546 3449 59 14 0 chr1 126079534 126079973 -71115459 - L1Md_F3 LINE L1 -14 6570 6126 1 1546 482 282 121 10 chr1 126079973 126080131 -71115301 + ORR1E LTR MaLR 207 378 -1 1 1546 205 169 0 33 chr1 126080933 126080994 -71114438 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1546 22 0 0 0 chr1 126081039 126081061 -71114371 + AT_rich Low_complexity Low_complexity 1 22 0 1 1546 294 98 0 0 chr1 126081491 126081542 -71113890 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1546 227 245 20 0 chr1 126081577 126081626 -71113806 + Lx8 LINE L1 6592 6641 -832 1 1546 527 309 142 11 chr1 126082065 126082248 -71113184 - ID_B1 SINE B4 -13 211 5 1 1546 215 335 149 28 chr1 126082361 126082542 -71112890 - L2 LINE L2 -551 2868 2666 1 1546 657 25 0 0 chr1 126083282 126083361 -71112071 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1546 856 258 15 10 chr1 126083463 126083540 -71111892 + ID SINE ID 2 79 -145 1 1546 423 312 65 0 chr1 126083540 126083678 -71111754 + B1F SINE Alu 1 147 -2 1 1546 324 355 62 48 chr1 126084307 126084452 -71110980 - B1_Mur1 SINE Alu -2 147 1 1 1546 258 302 28 119 chr1 126084586 126084700 -71110732 - B3 SINE B2 -6 210 107 1 1546 3195 128 41 25 chr1 126084700 126085261 -71110171 + Lx LINE L1 6085 6654 0 1 1546 258 302 28 119 chr1 126085261 126085289 -71110143 - B3 SINE B2 -110 106 81 1 1546 1177 216 5 0 chr1 126085298 126085520 -71109912 - MTC LTR MaLR 0 421 199 1 1546 239 0 0 31 chr1 126085527 126085559 -71109873 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 1546 3134 126 83 2 chr1 126085559 126086075 -71109357 - Lx3_Mus LINE L1 -23 6986 6429 1 1546 621 260 84 30 chr1 126086075 126086280 -71109152 - MTC LTR MaLR -203 193 3 1 1546 566 318 10 58 chr1 126086934 126087141 -71108291 - Lx8 LINE L1 -206 7267 7071 1 1546 613 297 10 42 chr1 126087644 126087837 -71107595 + B3A SINE B2 5 191 -7 1 1546 437 40 39 13 chr1 126088325 126088402 -71107030 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1546 756 33 0 0 chr1 126088877 126088968 -71106464 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1 1546 813 73 0 0 chr1 126088997 126089106 -71106326 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 1546 820 283 348 22 chr1 126089737 126089944 -71105488 + L1MA5 LINE L1 5104 5375 -925 1 1546 318 50 0 0 chr1 126089944 126089984 -71105448 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1546 820 300 68 92 chr1 126089984 126090712 -71104720 + L1MA5 LINE L1 5376 6077 -223 1 1546 1009 76 7 46 chr1 126090712 126090863 -71104569 - B1_Mus2 SINE Alu -1 146 2 1 1546 820 300 68 92 chr1 126090863 126091073 -71104359 + L1MA5 LINE L1 6078 6294 -6 1 1547 213 121 0 0 chr1 126091375 126091408 -71104024 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1547 291 28 0 0 chr1 126092257 126092293 -71103139 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1547 358 322 11 0 chr1 126092298 126092385 -71103047 - B3A SINE B2 -36 162 75 1 1547 35661 41 5 1 chr1 126092640 126097744 -71097688 + L1Md_T LINE L1 412 5589 -297 1 1547 8403 34 0 0 chr1 126097744 126098740 -71096692 + L1Md_T LINE L1 5590 6585 0 1 1547 1455 21 53 5 chr1 126099051 126099238 -71096194 + L1Md_F3 LINE L1 6377 6572 -12 1 1547 420 20 0 0 chr1 126099577 126099626 -71095806 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1547 483 241 67 54 chr1 126099639 126099788 -71095644 - B3A SINE B2 -47 151 1 1 1547 378 340 97 13 chr1 126099794 126099949 -71095483 - B3A SINE B2 0 216 49 1 1547 353 344 30 35 chr1 126100257 126100456 -71094976 - Lx8 LINE L1 -69 7404 7207 1 1547 498 266 42 47 chr1 126101318 126101475 -71093957 + B3A SINE B2 2 158 -40 1 1547 201 39 0 0 chr1 126101475 126101501 -71093931 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1547 498 266 42 47 chr1 126101501 126101536 -71093896 + B3A SINE B2 159 193 -5 1 1547 358 248 49 54 chr1 126101838 126101988 -71093444 - MTE2a LTR MaLR 0 379 219 1 1547 243 331 41 0 chr1 126102472 126102593 -71092839 + L1MEc LINE L1 108 233 -6167 1 1547 752 263 43 57 chr1 126102758 126102988 -71092444 + B4A SINE B4 2 228 -64 1 1547 284 287 103 61 chr1 126103403 126103763 -71091669 + L1MEc LINE L1 1068 1442 -4958 1 1547 255 61 0 0 chr1 126104111 126104144 -71091288 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1547 338 320 52 78 chr1 126104308 126104501 -71090931 + MTE2a LTR MaLR 27 214 -165 1 1547 317 289 0 12 chr1 126104503 126104587 -71090845 + CT-rich Low_complexity Low_complexity 2 84 0 1 1547 1199 52 14 9 chr1 126104590 126104808 -71090624 + (TG)n Simple_repeat Simple_repeat 1 219 0 1 1547 415 264 59 99 chr1 126104926 126105128 -71090304 - B3A SINE B2 -3 195 2 1 1547 461 341 35 12 chr1 126105731 126105903 -71089529 + B3A SINE B2 1 176 -22 1 1547 277 206 9 47 chr1 126105980 126106087 -71089345 + (TTTG)n Simple_repeat Simple_repeat 3 105 0 1 1547 575 208 0 0 chr1 126106094 126106195 -71089237 - B1_Mus2 SINE Alu 0 147 47 1 1547 212 59 0 29 chr1 126106326 126106361 -71089071 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 1 1547 499 344 32 6 chr1 126107494 126107652 -71087780 + B3A SINE B2 2 163 -35 1 1547 24 53 0 0 chr1 126107798 126107836 -71087596 + AT_rich Low_complexity Low_complexity 1 38 0 1 1547 181 107 0 0 chr1 126108244 126108272 -71087160 - L2 LINE L2 -1905 1514 1487 1 1547 410 319 123 5 chr1 126108478 126108673 -71086759 - MER2 DNA MER2_type -127 218 1 1 1547 21 0 0 0 chr1 126108763 126108784 -71086648 + AT_rich Low_complexity Low_complexity 1 21 0 1 1547 266 275 128 71 chr1 126108883 126109024 -71086408 - RSINE1 SINE B4 -12 153 5 1 1547 437 254 155 23 chr1 126109558 126109687 -71085745 + B1_Mur2 SINE Alu 2 147 -2 1 1547 610 294 186 64 chr1 126109836 126110196 -71085236 - MTE2b LTR MaLR -14 405 2 1 1547 188 321 161 0 chr1 126110321 126110377 -71085055 - MIRm SINE MIR -34 242 178 1 1547 415 315 79 20 chr1 126110746 126110898 -71084534 + MLT1D LTR MaLR 5 165 -340 1 1547 481 425 0 6 chr1 126111284 126111464 -71083968 - B3A SINE B2 -19 179 1 1 1547 1098 249 8 26 chr1 126112167 126112431 -71083001 - MTD LTR MaLR 0 419 161 2 1547 689 43 0 21 chr1 126112465 126112559 -71082873 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 2 1547 7320 71 29 2 chr1 126112572 126113926 -71081506 - L1Md_F2 LINE L1 0 6582 5217 2 1547 1211 34 0 0 chr1 126113923 126114072 -71081360 + L1_Mm LINE L1 4189 4337 -1546 2 1547 322 214 0 134 chr1 126114072 126114169 -71081263 - MTD LTR MaLR -337 84 1 2 1547 547 281 66 7 chr1 126114229 126114365 -71081067 + B4A SINE B4 31 174 -118 2 1547 197 98 24 0 chr1 126114833 126114874 -71080558 + (AATAG)n Simple_repeat Simple_repeat 2 43 0 2 1547 39 22 0 0 chr1 126115127 126115173 -71080259 + AT_rich Low_complexity Low_complexity 1 46 0 2 1547 546 306 5 46 chr1 126115335 126115369 -71080063 - B3A SINE B2 -11 187 156 2 1547 453 116 0 0 chr1 126115369 126115438 -71079994 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1547 546 306 5 46 chr1 126115438 126115598 -71079834 - B3A SINE B2 -43 155 1 2 1547 402 74 0 0 chr1 126116189 126116243 -71079189 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1547 285 258 65 93 chr1 126116947 126117054 -71078378 - MLT1H2 LTR MaLR -306 183 80 2 1547 861 308 80 36 chr1 126117195 126117582 -71077850 + MTD LTR MaLR 1 404 -15 2 1547 772 109 8 0 chr1 126118804 126118923 -71076509 - ORR1C2 LTR MaLR 0 384 265 2 1547 492 18 0 0 chr1 126119527 126119584 -71075848 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1547 269 298 0 23 chr1 126120053 126120139 -71075293 + (TATG)n Simple_repeat Simple_repeat 2 85 0 2 1547 413 363 51 34 chr1 126120176 126120390 -71075042 - B4A SINE B4 -16 208 1 2 1547 2784 30 0 0 chr1 126120427 126120765 -71074667 - ORR1A0 LTR MaLR -8 338 1 2 1547 215 261 114 14 chr1 126120840 126120910 -71074522 + ID2 SINE ID 5 81 -2 2 1547 181 57 0 54 chr1 126121073 126121110 -71074322 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1547 710 110 30 18 chr1 126121709 126121875 -71073557 + (TAGA)n Simple_repeat Simple_repeat 1 168 0 2 1547 859 123 13 0 chr1 126121895 126122049 -71073383 + (TAGA)n Simple_repeat Simple_repeat 1 156 0 2 1547 662 268 74 40 chr1 126122888 126123090 -71072342 - B3 SINE B2 -6 210 2 2 1547 696 24 0 0 chr1 126123532 126123614 -71071818 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1547 261 83 0 0 chr1 126123614 126123650 -71071782 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1547 523 316 15 0 chr1 126124431 126124567 -71070865 + B3A SINE B2 37 174 -24 2 1547 345 343 46 9 chr1 126125572 126125681 -71069751 - RSINE1 SINE B4 -38 127 15 2 1547 412 77 43 11 chr1 126126541 126126633 -71068799 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1547 580 285 14 14 chr1 126126649 126126855 -71068577 - B3A SINE B2 -9 207 2 2 1547 485 162 0 0 chr1 126127009 126127083 -71068349 - Lx3C LINE L1 -494 6482 6409 2 1547 2306 143 73 9 chr1 126127085 126127509 -71067923 + Lx3C LINE L1 6525 6975 -1 2 1547 22 35 0 0 chr1 126127509 126127538 -71067894 + AT_rich Low_complexity Low_complexity 1 29 0 2 1547 207 0 0 0 chr1 126127540 126127563 -71067869 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1547 316 195 100 131 chr1 126127668 126127798 -71067634 + RLTR9C LTR ERVK 268 393 0 2 1547 1547 241 33 3 chr1 126128091 126128457 -71066975 - MTEa LTR MaLR 0 379 3 2 1547 389 247 169 12 chr1 126128704 126128864 -71066568 - Lx7 LINE L1 -354 7342 7158 2 1547 324 284 11 0 chr1 126129281 126129365 -71066067 - B4 SINE B4 -44 248 159 2 1547 617 311 11 11 chr1 126129653 126129835 -71065597 - B3A SINE B2 -16 182 1 2 1547 278 320 20 30 chr1 126129835 126129935 -71065497 + MIRb SINE MIR 61 159 -109 2 1547 459 304 94 12 chr1 126130865 126131025 -71064407 - B4A SINE B4 -52 240 68 2 1547 1476 74 5 0 chr1 126131312 126131515 -71063917 + L1Md_F2 LINE L1 6367 6570 -12 2 1547 699 252 14 21 chr1 126131652 126131794 -71063638 + B1_Mur2 SINE Alu 8 148 -1 2 1547 195 100 0 0 chr1 126131796 126131826 -71063606 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2 1547 481 343 28 35 chr1 126132076 126132363 -71063069 + B4A SINE B4 2 286 -6 2 1547 387 0 0 0 chr1 126133369 126133412 -71062020 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1547 2683 246 61 3 chr1 126133642 126134014 -71061418 + Lx9 LINE L1 6730 7126 -518 2 1547 339 25 0 0 chr1 126134014 126134054 -71061378 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1547 2683 246 61 3 chr1 126134054 126134401 -71061031 + Lx9 LINE L1 7127 7490 -154 2 1547 1117 297 53 39 chr1 126135000 126135357 -71060075 + ORR1D2 LTR MaLR 1 362 -8 2 1547 429 316 41 60 chr1 126135686 126135884 -71059548 + B3A SINE B2 16 192 -6 2 1547 234 91 0 0 chr1 126136112 126136145 -71059287 + (ATG)n Simple_repeat Simple_repeat 1 33 0 2 1547 1559 283 61 44 chr1 126136191 126136735 -71058697 + Lx8 LINE L1 6876 7428 -45 2 1547 255 119 0 0 chr1 126136873 126136906 -71058526 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1547 396 59 0 0 chr1 126136906 126136957 -71058475 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1547 255 119 0 0 chr1 126136957 126136965 -71058467 + (TA)n Simple_repeat Simple_repeat 2 9 0 2 1547 365 315 101 49 chr1 126137581 126137848 -71057584 + HAL1b LINE L1 1496 1776 -233 2 1547 499 283 14 14 chr1 126137890 126138030 -71057402 + RSINE1 SINE B4 17 156 -9 2 1547 42 0 0 0 chr1 126138039 126138081 -71057351 + AT_rich Low_complexity Low_complexity 1 42 0 2 1547 339 125 94 0 chr1 126139966 126140030 -71055402 + HAL1-3A_ME LINE L1 1942 2011 -847 2 1547 189 121 0 0 chr1 126140041 126140074 -71055358 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1547 905 253 26 55 chr1 126140469 126140741 -71054691 - Lx6 LINE L1 -21 7439 7176 2 1547 29 47 0 0 chr1 126141536 126141579 -71053853 + AT_rich Low_complexity Low_complexity 1 43 0 2 1547 477 0 0 0 chr1 126141888 126141941 -71053491 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1547 525 303 10 74 chr1 126142224 126142427 -71053005 + B3A SINE B2 4 193 -5 2 1547 454 284 55 0 chr1 126142972 126143099 -71052333 + ORR1D1 LTR MaLR 2 135 -239 2 1547 273 179 36 0 chr1 126143173 126143229 -71052203 + ORR1D1 LTR MaLR 298 355 -19 2 1547 21 0 0 0 chr1 126143958 126143979 -71051453 + AT_rich Low_complexity Low_complexity 1 21 0 2 1547 2395 197 34 8 chr1 126143979 126144449 -71050983 - Lx4A LINE L1 -4 7054 6573 2 1547 1714 161 12 3 chr1 126144449 126144774 -71050658 - L1_Mur2 LINE L1 -583 5294 4967 2 1547 6987 107 21 15 chr1 126144777 126145899 -71049533 + Lx LINE L1 5524 6654 0 2 1547 3403 162 22 5 chr1 126145899 126146483 -71048949 - Lx4A LINE L1 -451 6607 6014 2 1547 25 0 0 0 chr1 126146654 126146679 -71048753 + AT_rich Low_complexity Low_complexity 1 25 0 2 1547 244 384 77 32 chr1 126147147 126147459 -71047973 + L2a LINE L2 2915 3240 -186 2 1547 358 243 58 48 chr1 126147702 126147885 -71047547 + Lx5 LINE L1 5675 5841 -471 2 1547 667 265 26 21 chr1 126148624 126148817 -71046615 + B3A SINE B2 5 198 0 2 1547 24032 136 68 34 chr1 126149334 126153353 -71042079 + L1_Mus2 LINE L1 384 4634 -1249 2 1547 5785 31 3 0 chr1 126153353 126154040 -71041392 + L1Md_T LINE L1 5893 6581 -1 2 1547 24032 127 76 21 chr1 126154040 126154573 -71040859 + L1_Mus2 LINE L1 4635 5188 -695 2 1547 252 0 0 0 chr1 126154573 126154601 -71040831 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1547 24032 127 76 21 chr1 126154601 126155090 -71040342 + L1_Mus2 LINE L1 5189 5672 -211 2 1547 531 0 0 0 chr1 126155090 126155149 -71040283 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1547 24032 74 3 65 chr1 126155149 126156042 -71039390 + L1_Mus2 LINE L1 5673 6566 0 2 1547 5115 97 25 23 chr1 126156357 126157142 -71038290 - L1_Mus3 LINE L1 0 6638 5852 2 1547 704 279 33 11 chr1 126157588 126157769 -71037663 + B3A SINE B2 9 193 -5 2 1547 804 340 15 7 chr1 126158303 126158576 -71036856 - B4A SINE B4 -3 289 15 2 1547 357 385 30 6 chr1 126158828 126158995 -71036437 - B3A SINE B2 0 198 28 2 1547 243 0 0 0 chr1 126159731 126159758 -71035674 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1547 990 80 0 0 chr1 126159758 126159894 -71035538 + (GGGAGA)n Simple_repeat Simple_repeat 6 142 0 2 1547 1323 107 37 5 chr1 126160216 126160433 -71034999 + L1_Mus3 LINE L1 6407 6630 -8 2 1547 642 292 0 6 chr1 126160651 126160813 -71034619 + RSINE1 SINE B4 5 165 0 2 1547 786 284 81 18 chr1 126161335 126161669 -71033763 + ORR1E LTR MaLR 3 357 -2 2 1547 230 206 68 171 chr1 126162733 126162748 -71032684 + MT2B LTR ERVL 153 155 -446 2 1547 582 208 88 44 chr1 126162748 126162884 -71032548 + B1_Mur1 SINE Alu 1 142 -7 2 1547 282 296 58 90 chr1 126162887 126163122 -71032310 + L1M4 LINE L1 5392 5622 -620 2 1547 953 291 52 38 chr1 126163122 126163490 -71031942 + MTEb LTR MaLR 3 375 -4 2 1547 241 296 58 90 chr1 126163490 126163532 -71031900 + L1M4 LINE L1 5623 5660 -582 2 1547 421 305 136 59 chr1 126163691 126164162 -71031270 + L1MA4 LINE L1 5794 6300 0 2 1547 384 169 135 23 chr1 126164202 126164310 -71031122 + L1MB7 LINE L1 5827 5945 -239 2 1547 786 259 10 48 chr1 126164388 126164570 -71030862 - B3A SINE B2 -4 212 32 2 1547 1631 42 0 9 chr1 126164570 126164788 -71030644 - L1Md_F3 LINE L1 0 6584 6369 2 1547 786 257 5 48 chr1 126164788 126164819 -71030613 - B3A SINE B2 -167 31 1 2 1547 794 322 58 18 chr1 126164827 126165324 -71030108 - L1M2 LINE L1 -512 5779 5263 2 1547 278 288 0 0 chr1 126165370 126165429 -71030003 - ID2 SINE ID -23 60 2 2 1547 205 85 85 0 chr1 126165736 126165783 -71029649 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 2 1547 568 301 91 74 chr1 126165828 126166180 -71029252 - ORR1E LTR MaLR 0 359 2 2 1547 8067 31 0 0 chr1 126166507 126168060 -71027372 - L1Md_T LINE L1 -1 6581 5029 2 1547 22 35 0 0 chr1 126168923 126168952 -71026480 + AT_rich Low_complexity Low_complexity 1 29 0 2 1547 537 331 7 7 chr1 126169081 126169227 -71026205 - RSINE1 SINE B4 -6 159 14 2 1547 7539 84 44 8 chr1 126169359 126170461 -71024971 + Lx3_Mus LINE L1 5869 7009 0 2 1547 992 302 11 34 chr1 126171478 126171745 -71023687 + B4 SINE B4 12 272 -20 2 1547 399 21 0 0 chr1 126171748 126171796 -71023636 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1547 369 0 0 0 chr1 126172024 126172065 -71023367 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1547 21 0 0 0 chr1 126172421 126172442 -71022990 + AT_rich Low_complexity Low_complexity 1 21 0 3 1547 425 261 0 0 chr1 126173193 126173281 -71022151 + B1_Mur2 SINE Alu 51 138 -11 3 1547 552 274 48 48 chr1 126173437 126173625 -71021807 + B3A SINE B2 5 192 -6 3 1547 3350 45 0 0 chr1 126173673 126174069 -71021363 - MTA_Mm LTR MaLR 0 396 1 3 1547 324 310 15 23 chr1 126174372 126174504 -71020928 + L1M5 LINE L1 3531 3661 -2485 3 1547 1602 204 53 50 chr1 126174599 126174976 -71020456 + ORR1C1 LTR MaLR 1 378 0 3 1547 687 216 227 31 chr1 126175090 126175315 -71020117 + Lx8 LINE L1 6719 6987 -486 3 1547 606 28 0 0 chr1 126175315 126175387 -71020045 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1547 300 246 0 0 chr1 126175388 126175457 -71019975 + Lx8 LINE L1 7045 7113 -360 3 1547 189 74 0 0 chr1 126175457 126175484 -71019948 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1547 2637 181 34 15 chr1 126175552 126176086 -71019346 - Lx4B LINE L1 -659 6399 5856 3 1547 2882 207 39 3 chr1 126176087 126176708 -71018724 + Lx4B LINE L1 6410 7052 -6 3 1547 539 273 53 0 chr1 126177354 126177486 -71017946 + RSINE1 SINE B4 9 147 -18 3 1547 221 250 0 19 chr1 126177989 126178042 -71017390 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1547 732 23 0 0 chr1 126178259 126178345 -71017087 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1547 783 280 39 0 chr1 126178346 126178528 -71016904 + MTEb LTR MaLR 182 370 -9 3 1547 1554 187 121 35 chr1 126178565 126178903 -71016529 + ORR1B2 LTR MaLR 1 367 0 3 1547 367 326 7 29 chr1 126179200 126179336 -71016096 + RMER30 DNA MER1_type 9 141 -61 3 1547 226 341 35 12 chr1 126179691 126179777 -71015655 + RSINE1 SINE B4 78 165 0 3 1547 451 316 56 50 chr1 126179931 126180111 -71015321 + B3 SINE B2 4 184 -32 3 1547 450 0 0 0 chr1 126180116 126180166 -71015266 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 3 1547 432 352 55 16 chr1 126181655 126181837 -71013595 + B3A SINE B2 2 190 -8 3 1547 10261 85 7 7 chr1 126182274 126184514 -71010918 - L1Md_A LINE L1 -3271 2612 414 3 1547 553 84 72 0 chr1 126184517 126184600 -71010832 - B1_Mur4 SINE Alu 0 150 62 3 1547 753 193 175 10 chr1 126184607 126184801 -71010631 + URR1A DNA MER1_type 1 226 0 3 1547 959 77 7 0 chr1 126185497 126185652 -71009780 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 1547 341 186 39 58 chr1 126186053 126186207 -71009225 + (CATATA)n Simple_repeat Simple_repeat 1 151 0 3 1547 366 61 0 0 chr1 126186398 126186447 -71008985 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1547 667 295 103 5 chr1 126187216 126187400 -71008032 + B4 SINE B4 83 284 -8 3 1547 415 234 21 11 chr1 126187582 126187677 -71007755 - MER5A DNA MER1_type 0 189 94 3 1547 319 298 81 26 chr1 126188888 126189034 -71006398 + MTEa LTR MaLR 13 163 -216 3 1547 368 233 172 0 chr1 126189055 126189171 -71006261 + MTEa LTR MaLR 233 368 -11 3 1547 579 168 9 9 chr1 126189855 126189969 -71005463 + URR1B DNA MER1_type 110 223 -2 3 1547 1246 64 29 6 chr1 126190834 126191006 -71004426 - L1_Mus1 LINE L1 0 6567 6392 3 1547 320 308 53 26 chr1 126191044 126191234 -71004198 + L1MB8 LINE L1 5077 5271 -875 3 1547 306 327 10 19 chr1 126191257 126191360 -71004072 + B2_Mm2 SINE B2 1 102 -93 3 1547 522 31 0 0 chr1 126191391 126191455 -71003977 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1547 508 324 111 25 chr1 126191575 126192135 -71003297 + L1MB8 LINE L1 5455 6062 -116 3 1547 543 300 26 7 chr1 126192241 126192392 -71003040 - RSINE1 SINE B4 -10 155 2 3 1547 264 374 44 56 chr1 126193173 126193425 -71002007 - Charlie2a DNA MER1_type -2393 468 220 3 1547 423 0 0 0 chr1 126193429 126193476 -71001956 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1547 245 333 105 37 chr1 126193481 126193643 -71001789 - B3 SINE B2 -38 178 6 3 1547 191 316 107 41 chr1 126193863 126193985 -71001447 + L2 LINE L2 2482 2611 -808 3 1547 965 120 72 28 chr1 126194032 126194212 -71001220 - B2_Mm2 SINE B2 -6 189 2 3 1547 399 56 0 0 chr1 126194916 126194970 -71000462 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1547 262 337 95 0 chr1 126194993 126195088 -71000344 - RSINE1 SINE B4 -47 118 15 3 1547 297 268 58 30 chr1 126195085 126195174 -71000258 + B3 SINE B2 111 198 0 3 1547 231 342 0 0 chr1 126195679 126195752 -70999680 + MIR3 SINE MIR 121 193 -15 3 1547 25 0 0 0 chr1 126196393 126196418 -70999014 + AT_rich Low_complexity Low_complexity 1 25 0 3 1547 553 324 14 13 chr1 126196424 126196616 -70998816 - B3A SINE B2 -5 211 19 3 1547 274 228 0 0 chr1 126196878 126196935 -70998497 + B4 SINE B4 30 86 -206 3 1547 247 276 0 0 chr1 126196935 126196993 -70998439 + A-rich Low_complexity Low_complexity 2 59 0 3 1547 484 130 22 0 chr1 126198213 126198305 -70997127 + CT-rich Low_complexity Low_complexity 2 95 0 3 1547 297 51 0 0 chr1 126198310 126198349 -70997083 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1547 1985 214 46 0 chr1 126199122 126199510 -70995922 - MTC LTR MaLR -2 419 14 3 1547 467 351 31 31 chr1 126199852 126200046 -70995386 + B3A SINE B2 5 198 0 3 1547 767 294 122 5 chr1 126200090 126200459 -70994973 + L1MC1 LINE L1 5600 6011 -322 3 1547 2041 107 7 7 chr1 126200756 126201056 -70994376 + L1_Mus3 LINE L1 6333 6632 -6 3 1547 33 25 0 0 chr1 126201056 126201096 -70994336 + AT_rich Low_complexity Low_complexity 1 40 0 3 1547 213 163 0 23 chr1 126201224 126201268 -70994164 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3 1547 390 91 0 0 chr1 126201610 126201665 -70993767 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1547 252 344 110 19 chr1 126202147 126202301 -70993131 - MIRb SINE MIR -48 220 53 3 1547 641 302 0 6 chr1 126202302 126202482 -70992950 - B3A SINE B2 -16 182 4 3 1547 308 352 104 87 chr1 126202645 126202944 -70992488 - MLT1J2 LTR MaLR -140 308 5 3 1547 1096 219 117 47 chr1 126203012 126203329 -70992103 - MTE2a LTR MaLR 0 379 41 3 1547 1318 82 5 11 chr1 126203351 126203536 -70991896 + B2_Mm2 SINE B2 1 184 -11 3 1547 245 158 0 95 chr1 126203576 126203639 -70991793 - MTE2a LTR MaLR -321 58 2 3 1547 1377 238 71 22 chr1 126204381 126204773 -70990659 - MTD LTR MaLR -14 405 1 3 1547 206 298 126 11 chr1 126205006 126205101 -70990331 + MIRb SINE MIR 104 209 -59 3 1547 21 0 0 0 chr1 126205179 126205200 -70990232 + AT_rich Low_complexity Low_complexity 1 21 0 3 1547 1395 71 5 25 chr1 126205207 126205410 -70990022 + L1_Mus2 LINE L1 6368 6566 0 3 1547 1206 198 89 14 chr1 126206054 126206346 -70989086 - RMER1A Other Other -4 1026 713 3 1547 854 247 50 92 chr1 126206537 126206818 -70988614 + B4 SINE B4 4 272 -20 3 1547 23 33 0 0 chr1 126207448 126207478 -70987954 + AT_rich Low_complexity Low_complexity 1 30 0 3 1547 3607 187 27 11 chr1 126207988 126208653 -70986779 + RLTR17 LTR ERVK 1 676 -16 3 1547 231 36 0 0 chr1 126208654 126208682 -70986750 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1547 522 349 33 73 chr1 126208821 126208906 -70986526 - B4 SINE B4 0 292 214 3 1547 4976 78 10 30 chr1 126208906 126209603 -70985829 - L1_Mus2 LINE L1 0 6566 5884 3 1547 522 349 33 73 chr1 126209603 126209820 -70985612 - B4 SINE B4 -79 213 3 3 1547 441 287 59 35 chr1 126210110 126210280 -70985152 + Tigger5 DNA MER2_type 2173 2346 -60 3 1547 432 0 0 0 chr1 126210369 126210417 -70985015 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 1547 1191 351 22 29 chr1 126211149 126211829 -70983603 + Lx8 LINE L1 6458 7132 -341 3 1547 306 158 197 0 chr1 126211838 126211914 -70983518 + Lx8 LINE L1 7377 7467 -6 3 1547 445 323 77 0 chr1 126211933 126212063 -70983369 + RSINE1 SINE B4 2 141 -24 3 1547 537 110 0 0 chr1 126212066 126212148 -70983284 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1547 414 0 0 0 chr1 126212632 126212678 -70982754 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1547 364 332 134 12 chr1 126212892 126213145 -70982287 - B4 SINE B4 -8 284 1 3 1547 525 320 84 66 chr1 126214285 126214559 -70980873 - B4 SINE B4 -13 279 1 3 1547 692 295 116 49 chr1 126215648 126215994 -70979438 - MLT1B LTR MaLR -12 378 10 3 1547 1006 295 139 3 chr1 126216958 126217288 -70978144 - MTE2b LTR MaLR -3 376 2 3 1547 24 0 0 0 chr1 126217775 126217799 -70977633 + AT_rich Low_complexity Low_complexity 1 24 0 3 1547 1476 273 11 19 chr1 126218165 126218527 -70976905 - MTE2a LTR MaLR -5 374 16 3 1547 714 298 16 22 chr1 126218806 126218963 -70976469 + B3A SINE B2 15 173 -25 3 1547 246 81 0 0 chr1 126218963 126219000 -70976432 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 3 1547 714 298 16 22 chr1 126219000 126219024 -70976408 + B3A SINE B2 174 195 -3 3 1547 21 71 0 0 chr1 126219129 126219171 -70976261 + AT_rich Low_complexity Low_complexity 1 42 0 3 1547 1338 236 113 3 chr1 126219683 126220011 -70975421 - ORR1D1 LTR MaLR -10 364 1 3 1547 311 282 40 141 chr1 126220011 126220105 -70975327 + RSINE1 SINE B4 81 164 -1 3 1547 406 321 10 48 chr1 126220144 126220350 -70975082 - B3A SINE B2 0 198 1 3 1547 1245 259 107 8 chr1 126221209 126221564 -70973868 + MTD LTR MaLR 10 399 -20 3 1547 312 211 0 0 chr1 126221793 126221845 -70973587 - B4 SINE B4 -227 65 14 3 1547 239 0 32 0 chr1 126222145 126222176 -70973256 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 193 1008 268 113 14 chr1 126222314 126222659 -70972773 - MTE2a LTR MaLR 0 379 1 3 1548 617 265 144 34 chr1 126223198 126223518 -70971914 + ORR1E LTR MaLR 1 355 -4 3 1548 634 149 0 18 chr1 126223822 126223931 -70971501 - B1_Mur4 SINE Alu 0 150 44 3 1548 277 168 0 74 chr1 126223956 126224023 -70971409 - B1_Mus1 SINE Alu -88 60 1 4 1548 388 328 116 22 chr1 126224077 126224258 -70971174 - B3A SINE B2 0 198 1 4 1548 25 90 0 0 chr1 126224269 126224336 -70971096 + AT_rich Low_complexity Low_complexity 1 67 0 4 1548 507 330 44 33 chr1 126224377 126224647 -70970785 + B4A SINE B4 2 274 -18 4 1548 213 39 0 0 chr1 126225053 126225079 -70970353 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1548 222 37 0 0 chr1 126225095 126225122 -70970310 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 1548 23 54 0 0 chr1 126225704 126225741 -70969691 + AT_rich Low_complexity Low_complexity 1 37 0 4 1548 469 211 126 115 chr1 126225758 126225940 -70969492 - B3A SINE B2 -11 184 1 4 1548 423 0 0 0 chr1 126226388 126226435 -70968997 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1548 342 0 0 0 chr1 126227065 126227103 -70968329 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1548 480 129 0 0 chr1 126227103 126227204 -70968228 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1548 494 344 40 0 chr1 126227205 126227356 -70968076 - B3A SINE B2 -38 160 4 4 1548 561 105 0 0 chr1 126227773 126227859 -70967573 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1548 464 294 70 53 chr1 126228820 126229007 -70966425 - B3A SINE B2 -4 194 5 4 1548 261 315 57 89 chr1 126229345 126229502 -70965930 - RSINE1 SINE B4 -12 153 2 4 1548 2835 123 2 2 chr1 126229823 126230262 -70965170 + Lx4A LINE L1 6340 6778 -280 4 1548 210 71 0 0 chr1 126230273 126230301 -70965131 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1548 477 324 35 7 chr1 126230301 126230444 -70964988 + B3A SINE B2 34 180 -18 4 1548 554 225 101 86 chr1 126230600 126230809 -70964623 - B3A SINE B2 0 216 5 4 1548 313 328 8 0 chr1 126231305 126231427 -70964005 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 1548 363 360 12 36 chr1 126231659 126231826 -70963606 + L3 LINE CR1 4311 4473 -16 4 1548 293 359 74 19 chr1 126232902 126233064 -70962368 + B3 SINE B2 38 208 -8 4 1548 216 135 0 0 chr1 126233065 126233102 -70962330 + (CAT)n Simple_repeat Simple_repeat 1 37 0 4 1548 1347 64 0 0 chr1 126233417 126233620 -70961812 + (GAA)n Simple_repeat Simple_repeat 1 203 0 4 1548 867 90 0 0 chr1 126233620 126233742 -70961690 + (GGAGA)n Simple_repeat Simple_repeat 5 126 0 4 1548 532 231 43 99 chr1 126233991 126234202 -70961230 + RLTR11B LTR ERVK 88 286 -167 4 1548 244 221 227 38 chr1 126234242 126234374 -70961058 + RLTR11B LTR ERVK 282 438 -15 4 1548 232 349 0 0 chr1 126234511 126234577 -70960855 + B3A SINE B2 2 67 -131 4 1548 270 0 0 0 chr1 126234728 126234758 -70960674 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1548 946 53 0 22 chr1 126234760 126234895 -70960537 + (GGGAGA)n Simple_repeat Simple_repeat 2 133 0 4 1548 790 247 253 65 chr1 126235090 126235169 -70960263 + MT2B LTR ERVL 1 109 -492 4 1548 194 0 0 37 chr1 126235169 126235196 -70960236 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1548 790 247 253 65 chr1 126235196 126235528 -70959904 + MT2B LTR ERVL 110 520 -81 4 1548 543 16 0 0 chr1 126235528 126235592 -70959840 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1548 790 247 253 65 chr1 126235592 126235685 -70959747 + MT2B LTR ERVL 521 599 -2 4 1548 1056 46 33 0 chr1 126235802 126235953 -70959479 + L1Md_F3 LINE L1 6403 6558 -26 4 1548 216 0 0 0 chr1 126235953 126235977 -70959455 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 1548 337 325 32 38 chr1 126236388 126236545 -70958887 + MER20 DNA MER1_type 2 157 -62 4 1548 200 97 32 0 chr1 126236925 126236956 -70958476 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 4 1548 661 260 10 48 chr1 126236991 126237027 -70958405 - B3A SINE B2 0 198 170 4 1548 378 0 0 0 chr1 126237027 126237069 -70958363 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1548 661 260 10 48 chr1 126237069 126237238 -70958194 - B3A SINE B2 -29 169 1 4 1548 872 299 19 108 chr1 126237241 126237657 -70957775 - MTE2a LTR MaLR 0 379 1 4 1548 492 339 60 75 chr1 126237681 126238067 -70957365 + MER45B DNA Tip100 461 840 -200 4 1548 414 0 0 0 chr1 126238083 126238129 -70957303 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1548 414 305 172 0 chr1 126238131 126238259 -70957173 - B3A SINE B2 -47 151 2 4 1548 249 33 0 0 chr1 126239025 126239055 -70956377 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1548 1017 285 108 10 chr1 126239804 126240287 -70955145 + Lx8 LINE L1 6828 7357 -116 4 1548 201 237 0 0 chr1 126240287 126240325 -70955107 + polypurine Low_complexity Low_complexity 2 39 0 4 1548 441 54 0 0 chr1 126240417 126240473 -70954959 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1548 626 298 47 47 chr1 126241070 126241089 -70954343 - B3 SINE B2 0 216 195 4 1548 369 0 0 0 chr1 126241089 126241130 -70954302 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1548 438 36 0 0 chr1 126241130 126241185 -70954247 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1548 2614 75 26 0 chr1 126241195 126241543 -70953889 + IAPEY2_LTR LTR ERVK 1 357 0 4 1548 626 298 47 47 chr1 126241543 126241726 -70953706 - B3 SINE B2 -33 183 3 4 1548 2140 64 0 0 chr1 126241849 126242115 -70953317 - L1_Mus1 LINE L1 -1 6566 6301 4 1548 15613 131 17 27 chr1 126242115 126245315 -70950117 - L1Md_F LINE L1 -2006 3877 725 4 1548 358 286 15 8 chr1 126245317 126245451 -70949981 - L1Md_F LINE L1 -5807 809 675 4 1548 536 230 19 75 chr1 126245509 126245755 -70949677 - L1VL1 LINE L1 -6035 387 87 4 1548 256 230 0 119 chr1 126245824 126245908 -70949524 + MTD LTR MaLR 307 380 -39 4 1548 198 396 73 21 chr1 126246304 126246495 -70948937 - MIRb SINE MIR -15 253 53 4 1548 246 27 0 0 chr1 126246801 126246838 -70948594 - L1_Mus2 LINE L1 -2 6564 6528 4 1548 25935 156 13 12 chr1 126246875 126251109 -70944323 + L1_Mus3 LINE L1 500 4732 -1151 4 1548 210 37 0 0 chr1 126251109 126251136 -70944296 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1548 25935 142 11 10 chr1 126251136 126251774 -70943658 + L1_Mus3 LINE L1 4733 5377 -506 4 1548 3202 48 8 0 chr1 126251774 126252167 -70943265 - MTA_Mm LTR MaLR 0 396 1 4 1548 25935 104 10 2 chr1 126252167 126253068 -70942364 + L1_Mus3 LINE L1 5378 6281 -357 4 1548 548 105 11 0 chr1 126253068 126253163 -70942269 + L1_Mus3 LINE L1 6538 6633 -5 4 1548 494 240 30 0 chr1 126253552 126253652 -70941780 - B4A SINE B4 -6 286 184 4 1548 231 263 102 95 chr1 126253615 126253721 -70941711 - PB1D9 SINE Alu -7 113 2 4 1548 397 281 194 5 chr1 126253868 126254054 -70941378 + MLT1B LTR MaLR 1 221 -169 4 1548 851 306 20 96 chr1 126254429 126254591 -70940841 + MTE2a LTR MaLR 3 147 -232 4 1548 2864 14 128 3 chr1 126254591 126254943 -70940489 - MTA_Mm LTR MaLR 0 396 1 4 1548 851 306 20 96 chr1 126254943 126255188 -70940244 + MTE2a LTR MaLR 148 379 0 4 1548 1570 211 24 63 chr1 126255289 126255669 -70939763 + RMER13A LTR ERVK 496 860 0 4 1548 531 78 0 0 chr1 126255809 126255886 -70939546 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1548 775 240 7 0 chr1 126255888 126256042 -70939390 - B3A SINE B2 -43 155 1 4 1548 25 65 0 0 chr1 126256388 126256434 -70938998 + AT_rich Low_complexity Low_complexity 1 46 0 4 1548 2068 154 12 0 chr1 126256911 126257256 -70938176 - Lx2B LINE L1 0 7000 6652 4 1548 1686 53 13 4 chr1 126257255 126257484 -70937948 + L1Md_F3 LINE L1 6351 6581 -3 4 1548 183 80 0 0 chr1 126257494 126257519 -70937913 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1548 254 105 0 0 chr1 126257521 126257559 -70937873 + Lx2B LINE L1 6630 6667 -333 4 1548 303 28 0 0 chr1 126257775 126257811 -70937621 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1548 586 267 0 0 chr1 126257854 126257974 -70937458 - B3A SINE B2 -78 120 1 4 1548 301 289 90 38 chr1 126258212 126258345 -70937087 - B1_Mur1 SINE Alu -7 142 3 4 1548 378 0 0 0 chr1 126259148 126259190 -70936242 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1548 365 326 20 46 chr1 126259922 126260073 -70935359 + MIR SINE MIR 51 197 -65 4 1548 209 132 0 26 chr1 126260284 126260323 -70935109 + T-rich Low_complexity Low_complexity 2 39 0 4 1548 1077 188 52 68 chr1 126260326 126260652 -70934780 - Lx7 LINE L1 0 7696 7376 4 1548 955 279 17 17 chr1 126260722 126261010 -70934422 - Lx7 LINE L1 -329 7367 7080 4 1548 829 292 18 49 chr1 126261041 126261430 -70934002 - Lx8 LINE L1 -184 7289 6913 4 1548 249 329 40 126 chr1 126263033 126263207 -70932225 - B4A SINE B4 -126 166 8 4 1548 450 0 0 0 chr1 126263640 126263690 -70931742 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 4 1548 554 287 108 75 chr1 126263797 126264196 -70931236 + RMER10A LTR ERVL 1 412 -30 4 1548 1991 162 40 52 chr1 126264196 126264245 -70931187 - RMER10B LTR ERVL 0 398 351 4 1548 387 0 0 0 chr1 126264245 126264288 -70931144 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1548 1991 162 40 52 chr1 126264288 126264641 -70930791 - RMER10B LTR ERVL -48 350 1 4 1548 839 252 7 129 chr1 126264722 126265009 -70930423 + MTE2a LTR MaLR 1 252 -127 4 1548 568 255 18 8 chr1 126265108 126265251 -70930181 + MTE2a LTR MaLR 244 405 -14 4 1548 900 132 0 0 chr1 126265593 126265759 -70929673 + (TCC)n Simple_repeat Simple_repeat 3 168 0 4 1548 213 121 0 0 chr1 126266108 126266141 -70929291 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1548 228 182 0 0 chr1 126266863 126266907 -70928525 + GA-rich Low_complexity Low_complexity 5 48 0 4 1548 582 242 68 0 chr1 126266907 126267039 -70928393 - RSINE1 SINE B4 -22 143 3 4 1548 231 323 0 0 chr1 126267142 126267204 -70928228 + ID2 SINE ID 13 74 -9 4 1548 699 46 0 0 chr1 126267207 126267294 -70928138 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 1548 204 67 0 0 chr1 126267460 126267490 -70927942 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1548 1019 80 14 0 chr1 126267490 126267628 -70927804 - B1_Mus1 SINE Alu 0 148 9 4 1548 620 99 0 0 chr1 126267628 126267710 -70927722 + B1_Mm SINE Alu 56 137 -10 4 1548 207 0 0 0 chr1 126267710 126267733 -70927699 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1548 653 315 59 69 chr1 126267777 126268067 -70927365 + B4A SINE B4 1 287 -5 4 1548 416 19 19 0 chr1 126268084 126268137 -70927295 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1548 684 301 10 41 chr1 126268855 126269052 -70926380 + B3A SINE B2 2 192 -6 4 1548 21 0 0 0 chr1 126269079 126269100 -70926332 + AT_rich Low_complexity Low_complexity 1 21 0 4 1548 264 111 0 0 chr1 126269420 126269465 -70925967 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1548 626 311 73 31 chr1 126269547 126269894 -70925538 - MTD LTR MaLR -17 404 1 5 1548 594 278 30 5 chr1 126269942 126270200 -70925232 - L1MA4 LINE L1 -370 5930 5669 5 1548 331 261 54 12 chr1 126270340 126270507 -70924925 + L1M2 LINE L1 5146 5319 -824 5 1548 189 0 0 0 chr1 126270515 126270536 -70924896 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1548 532 318 118 36 chr1 126270550 126270915 -70924517 + Lx8 LINE L1 7079 7473 0 5 1548 441 36 0 0 chr1 126270932 126270987 -70924445 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 1548 885 86 79 7 chr1 126270988 126271128 -70924304 - B2_Mm2 SINE B2 -41 154 5 5 1548 1061 264 113 6 chr1 126271588 126271924 -70923508 + RMER1B Other Other 59 430 -636 5 1548 515 205 83 42 chr1 126271920 126272088 -70923344 + RMER1B Other Other 737 946 -120 5 1548 663 155 27 14 chr1 126272094 126272254 -70923178 + RMER1B Other Other 866 1057 -9 5 1548 181 119 48 0 chr1 126273164 126273206 -70922226 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 5 1548 620 315 0 60 chr1 126273498 126273731 -70921701 + Lx5 LINE L1 6465 6683 -367 5 1548 1648 179 86 3 chr1 126273757 126274060 -70921372 + RMER20B LTR ERVK 1 328 -299 5 1548 317 241 28 9 chr1 126274104 126274213 -70921219 + T-rich Low_complexity Low_complexity 4 114 0 5 1548 191 233 0 0 chr1 126274239 126274282 -70921150 - L2a LINE L2 -4 3422 3380 5 1548 246 303 63 49 chr1 126274783 126274988 -70920444 + L1M2 LINE L1 5670 5877 -423 5 1548 271 284 46 64 chr1 126275439 126275548 -70919884 + B4A SINE B4 186 292 0 5 1548 2869 89 0 3 chr1 126275763 126276144 -70919288 - L1_Mus2 LINE L1 -4 6562 6183 5 1548 17835 34 1 0 chr1 126276850 126279006 -70916426 + L1Md_F2 LINE L1 3427 5585 -298 5 1548 7984 47 2 8 chr1 126279008 126280008 -70915424 + L1Md_F2 LINE L1 5588 6581 -1 5 1548 236 297 21 89 chr1 126280100 126280212 -70915220 + RSINE1 SINE B4 91 290 -2 5 1548 256 216 0 3 chr1 126280260 126280325 -70915107 - MTD LTR MaLR -14 405 311 5 1548 344 135 0 0 chr1 126280334 126280386 -70915046 + B3A SINE B2 4 55 -143 5 1548 355 289 87 68 chr1 126280396 126280626 -70914806 + MLT1A1 LTR MaLR 114 403 -5 5 1548 757 213 68 15 chr1 126281319 126281524 -70913908 + B3 SINE B2 1 216 0 5 1548 3103 79 2 0 chr1 126281781 126282201 -70913231 - BGLII LTR ERVK 0 421 1 5 1548 971 271 61 35 chr1 126282256 126282641 -70912791 + MTE2a LTR MaLR 17 419 0 5 1548 368 364 35 97 chr1 126283421 126283731 -70911701 + B4 SINE B4 2 292 0 5 1548 562 242 3 10 chr1 126283736 126284044 -70911388 + (CA)n Simple_repeat Simple_repeat 1 305 0 5 1548 1931 241 17 47 chr1 126284493 126285020 -70910412 + RLTR11A2 LTR ERVK 1 511 -16 5 1548 493 292 95 6 chr1 126285306 126285475 -70909957 - B4A SINE B4 -2 290 107 5 1548 794 322 153 22 chr1 126285475 126285977 -70909455 - MER44D DNA MER2_type -134 571 4 5 1548 444 62 0 0 chr1 126287512 126287576 -70907856 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1548 398 20 0 19 chr1 126287576 126287627 -70907805 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1548 596 278 75 96 chr1 126287649 126287888 -70907544 - B4A SINE B4 -48 244 11 5 1548 477 0 0 0 chr1 126287941 126287994 -70907438 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1548 827 291 23 16 chr1 126288238 126288496 -70906936 - RMER15 LTR ERVL -23 552 293 5 1548 1084 282 99 24 chr1 126289228 126289562 -70905870 - ORR1E LTR MaLR 0 359 1 5 1548 501 325 125 42 chr1 126290671 126290960 -70904472 - MTD LTR MaLR 0 419 107 5 1548 964 271 86 32 chr1 126291329 126291642 -70903790 - MTD LTR MaLR -8 411 82 5 1548 342 0 0 0 chr1 126292445 126292483 -70902949 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1548 699 290 53 0 chr1 126293467 126293636 -70901796 + B4A SINE B4 113 290 -2 5 1548 255 61 0 0 chr1 126293654 126293687 -70901745 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1548 444 274 32 26 chr1 126293693 126293892 -70901540 + MTE2a LTR MaLR 169 373 -6 5 1548 201 244 0 0 chr1 126293917 126293962 -70901470 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1548 511 347 0 0 chr1 126293975 126294151 -70901281 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1548 240 296 0 0 chr1 126294177 126294319 -70901113 + (TG)n Simple_repeat Simple_repeat 1 142 0 5 1548 228 245 0 55 chr1 126294362 126294526 -70900906 + (TATG)n Simple_repeat Simple_repeat 4 158 0 5 1548 506 350 0 0 chr1 126294573 126294750 -70900682 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1548 752 306 35 5 chr1 126294846 126295043 -70900389 - B4 SINE B4 -83 209 7 5 1548 348 64 20 78 chr1 126295057 126295159 -70900273 + (TTTG)n Simple_repeat Simple_repeat 1 96 0 5 1548 973 82 0 0 chr1 126295161 126295295 -70900137 - B1_Mus1 SINE Alu 0 148 15 5 1548 353 248 47 101 chr1 126295167 126295315 -70900117 - B4A SINE B4 -71 221 82 5 1548 362 358 69 62 chr1 126296860 126297149 -70898283 + B4A SINE B4 1 291 -1 5 1548 319 98 33 0 chr1 126297156 126297217 -70898215 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1548 297 183 0 0 chr1 126297252 126297312 -70898120 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1548 527 0 16 0 chr1 126297536 126297599 -70897833 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1548 815 294 5 5 chr1 126297720 126297922 -70897510 + B3 SINE B2 8 209 -7 5 1548 695 75 9 0 chr1 126298396 126298503 -70896929 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1548 180 0 0 0 chr1 126298503 126298522 -70896910 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1548 542 309 51 46 chr1 126298946 126299143 -70896289 + B3A SINE B2 1 198 0 5 1548 371 350 0 16 chr1 126300061 126300183 -70895249 + RMER15 LTR ERVL 323 442 -133 5 1548 403 299 45 70 chr1 126301580 126301781 -70893651 - B3A SINE B2 0 198 3 5 1548 1487 11 11 0 chr1 126303547 126303723 -70891709 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1548 387 0 0 0 chr1 126303723 126303766 -70891666 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1548 511 338 56 87 chr1 126303771 126304037 -70891395 - B4 SINE B4 0 292 35 5 1548 2032 297 77 39 chr1 126304150 126304966 -70890466 + Lx9 LINE L1 6330 7176 -468 5 1548 207 0 0 0 chr1 126304975 126304998 -70890434 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1548 192 40 0 0 chr1 126305002 126305027 -70890405 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1548 346 296 28 21 chr1 126305112 126305257 -70890175 + Lx9 LINE L1 7325 7470 -174 5 1548 405 0 0 0 chr1 126305263 126305308 -70890124 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1548 225 0 0 0 chr1 126305703 126305728 -70889704 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 5 1548 235 319 150 26 chr1 126306004 126306197 -70889235 + MIRb SINE MIR 24 240 -28 5 1548 243 0 0 0 chr1 126306739 126306766 -70888666 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1548 240 324 9 37 chr1 126306962 126307071 -70888361 - MIR3 SINE MIR -24 184 79 5 1548 220 238 0 23 chr1 126307639 126307725 -70887707 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1548 1331 64 16 0 chr1 126308434 126308621 -70886811 - L1Md_A LINE L1 0 6582 6393 5 1548 1156 269 81 14 chr1 126309248 126309595 -70885837 - MTE2b LTR MaLR -9 370 1 5 1548 21 0 0 0 chr1 126309723 126309744 -70885688 + AT_rich Low_complexity Low_complexity 1 21 0 5 1548 978 321 115 0 chr1 126310517 126310857 -70884575 + MTE2b LTR MaLR 1 379 0 5 1548 273 385 68 20 chr1 126311056 126311106 -70884326 - RSINE1 SINE B4 0 165 119 5 1548 408 20 0 0 chr1 126311106 126311155 -70884277 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1548 273 385 68 20 chr1 126311155 126311250 -70884182 - RSINE1 SINE B4 -47 118 14 5 1548 24 32 0 0 chr1 126312610 126312641 -70882791 + AT_rich Low_complexity Low_complexity 1 31 0 5 1548 215 386 30 68 chr1 126312743 126312979 -70882453 + B4A SINE B4 4 230 -62 5 1548 726 128 0 0 chr1 126313879 126314028 -70881404 + (GA)n Simple_repeat Simple_repeat 2 150 0 5 1548 513 0 0 0 chr1 126314177 126314234 -70881198 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1548 263 26 0 49 chr1 126314397 126314438 -70880994 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 5 1548 228 402 0 0 chr1 126314586 126314668 -70880764 - B1F2 SINE Alu -67 82 1 5 1548 814 292 74 84 chr1 126315426 126315927 -70879505 + Lx8 LINE L1 6941 7436 -37 5 1548 22 0 0 0 chr1 126315931 126315953 -70879479 + AT_rich Low_complexity Low_complexity 1 22 0 5 1548 472 306 31 24 chr1 126316131 126316258 -70879174 - B1F2 SINE Alu 0 149 22 5 1548 450 0 0 0 chr1 126316331 126316381 -70879051 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1548 237 178 0 0 chr1 126316381 126316426 -70879006 + GA-rich Low_complexity Low_complexity 2 46 0 5 1548 295 329 0 0 chr1 126316487 126316563 -70878869 - B4 SINE B4 -216 76 1 5 1548 830 54 9 0 chr1 126316891 126317003 -70878429 + (TA)n Simple_repeat Simple_repeat 2 114 0 5 1548 654 319 35 35 chr1 126317053 126317336 -70878096 + B4A SINE B4 2 284 -8 5 1548 1405 258 44 14 chr1 126317927 126318292 -70877140 + MTE2b LTR MaLR 3 378 -1 5 1548 578 324 41 41 chr1 126318588 126318807 -70876625 + B4 SINE B4 2 220 -72 5 1548 333 155 0 0 chr1 126318839 126318897 -70876535 + (CAA)n Simple_repeat Simple_repeat 2 59 0 5 1548 239 342 13 40 chr1 126318899 126318975 -70876457 + B4 SINE B4 219 292 0 5 1548 382 364 69 16 chr1 126319190 126319436 -70875996 - L2 LINE L2 -337 3082 2824 5 1548 371 235 23 12 chr1 126319571 126319657 -70875775 - B3A SINE B2 -80 118 32 5 1548 279 0 0 0 chr1 126319867 126319898 -70875534 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1548 1079 120 11 0 chr1 126319918 126320093 -70875339 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 5 1548 430 351 64 50 chr1 126320093 126320312 -70875120 + MLT1G3 LTR MaLR 372 593 -2 5 1548 569 329 111 12 chr1 126320920 126321172 -70874260 + B4 SINE B4 12 288 -4 5 1548 646 302 96 15 chr1 126321278 126321684 -70873748 + L1MA6 LINE L1 5676 6114 -186 6 1548 533 213 24 0 chr1 126321839 126321966 -70873466 - L1MA6 LINE L1 -7 6293 6164 6 1548 404 277 120 42 chr1 126321973 126322165 -70873267 - Lx8 LINE L1 0 7473 7267 6 1548 310 383 24 12 chr1 126322897 126323066 -70872366 + B4 SINE B4 3 173 -119 6 1548 309 26 0 0 chr1 126323654 126323692 -70871740 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1548 26 0 0 0 chr1 126324205 126324231 -70871201 + AT_rich Low_complexity Low_complexity 1 26 0 6 1548 537 295 56 34 chr1 126324456 126324635 -70870797 + B3A SINE B2 1 183 -15 6 1548 930 327 3 52 chr1 126325278 126325565 -70869867 + B4 SINE B4 7 279 -13 6 1548 839 330 19 4 chr1 126327032 126327300 -70868132 - B4A SINE B4 -18 274 3 6 1548 322 296 35 49 chr1 126327519 126327661 -70867771 - L1ME3A LINE L1 -32 6141 6002 6 1548 230 250 16 16 chr1 126327881 126327942 -70867490 + CT-rich Low_complexity Low_complexity 1 61 0 6 1548 758 221 0 14 chr1 126327975 126328113 -70867319 + B3 SINE B2 1 136 -80 6 1548 195 100 0 0 chr1 126328152 126328182 -70867250 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 6 1548 770 331 53 55 chr1 126328222 126328594 -70866838 - L1M2 LINE L1 -878 5265 4891 6 1548 747 336 56 3 chr1 126328594 126328952 -70866480 - MTEa LTR MaLR -2 377 1 6 1548 770 331 53 55 chr1 126328952 126329476 -70865956 - L1M2 LINE L1 -1253 4890 4370 6 1548 855 374 42 32 chr1 126330361 126330750 -70864682 + MT2A LTR ERVL 3 383 -150 6 1548 846 196 165 0 chr1 126330750 126330944 -70864488 + URR1A DNA MER1_type 1 226 0 6 1548 855 374 42 32 chr1 126330944 126331077 -70864355 + MT2A LTR ERVL 384 529 -4 6 1548 22 0 0 0 chr1 126331275 126331297 -70864135 + AT_rich Low_complexity Low_complexity 1 22 0 6 1548 619 314 16 11 chr1 126331919 126332109 -70863323 + B3A SINE B2 2 192 -6 6 1548 453 116 0 0 chr1 126332877 126332946 -70862486 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 6 1548 272 316 13 0 chr1 126332958 126333034 -70862398 + RSINE1 SINE B4 16 92 -73 6 1548 585 0 0 0 chr1 126333539 126333604 -70861828 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1548 279 327 17 34 chr1 126333775 126333892 -70861540 - MLT1A1 LTR MaLR -8 400 286 6 1548 488 391 48 56 chr1 126334389 126334782 -70860650 - MER68 LTR ERVL -161 402 13 6 1548 300 342 68 45 chr1 126335524 126335790 -70859642 + B4 SINE B4 3 274 -18 6 1548 320 181 0 12 chr1 126335834 126335918 -70859514 + CT-rich Low_complexity Low_complexity 1 83 0 6 1548 447 52 0 0 chr1 126335921 126335979 -70859453 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1548 26 0 0 0 chr1 126336133 126336159 -70859273 + AT_rich Low_complexity Low_complexity 1 26 0 6 1548 380 334 41 75 chr1 126336320 126336717 -70858715 + RMER15 LTR ERVL 23 575 0 6 1548 675 302 0 50 chr1 126337561 126337760 -70857672 - B3A SINE B2 -4 194 6 6 1548 536 307 22 14 chr1 126338005 126338144 -70857288 - B3A SINE B2 -58 140 1 6 1548 642 354 53 25 chr1 126338668 126338952 -70856480 + B4A SINE B4 1 292 0 6 1548 618 156 0 0 chr1 126338952 126339087 -70856345 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 1548 227 344 138 0 chr1 126340101 126340206 -70855226 + B1F1 SINE Alu 1 115 -2 6 1548 447 349 13 7 chr1 126340276 126340396 -70855036 + RSINE1 SINE B4 8 128 -37 6 1548 387 0 0 0 chr1 126340396 126340439 -70854993 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1548 447 349 13 7 chr1 126340439 126340468 -70854964 + RSINE1 SINE B4 129 157 -8 6 1548 432 284 122 12 chr1 126341195 126341359 -70854073 - B3A SINE B2 -16 182 1 6 1548 183 129 0 0 chr1 126341921 126341952 -70853480 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1548 400 298 61 150 chr1 126341997 126342148 -70853284 - B4 SINE B4 -75 217 81 6 1548 347 60 20 0 chr1 126342148 126342198 -70853234 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1548 400 298 61 150 chr1 126342198 126342259 -70853173 - B4 SINE B4 -212 80 24 6 1548 190 350 60 47 chr1 126342674 126342824 -70852608 + MIRb SINE MIR 66 217 -51 6 1548 404 307 39 23 chr1 126342880 126343010 -70852422 + B3A SINE B2 4 135 -63 6 1548 482 57 14 0 chr1 126343012 126343082 -70852350 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1548 198 26 77 0 chr1 126343246 126343285 -70852147 + (TTG)n Simple_repeat Simple_repeat 1 42 0 6 1548 3631 30 0 0 chr1 126343329 126343755 -70851677 - L1Md_T LINE L1 -1 6581 6156 6 1548 3125 147 27 9 chr1 126343859 126344410 -70851022 + RLTR31_Mm LTR ERVK 1 561 0 6 1548 460 221 39 0 chr1 126344444 126344571 -70850861 - Lx5 LINE L1 0 7050 6919 6 1548 1052 293 11 0 chr1 126344937 126345224 -70850208 + B4A SINE B4 3 292 0 6 1548 918 100 0 0 chr1 126345288 126345428 -70850004 + (GA)n Simple_repeat Simple_repeat 2 141 0 6 1548 301 344 49 8 chr1 126345548 126345671 -70849761 - LTR16E2 LTR ERVL -111 457 330 6 1548 321 269 129 110 chr1 126345936 126346208 -70849224 + B4 SINE B4 2 278 -14 6 1548 824 28 0 9 chr1 126346217 126346325 -70849107 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 1548 278 198 160 0 chr1 126346470 126346576 -70848856 - Lx9 LINE L1 -2 7642 7520 6 1548 396 0 0 0 chr1 126346579 126346623 -70848809 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 6 1548 331 225 25 0 chr1 126346689 126346769 -70848663 - Lx9 LINE L1 -289 7355 7274 6 1548 607 259 116 25 chr1 126346823 126347021 -70848411 - B3 SINE B2 0 216 1 6 1548 850 339 44 56 chr1 126350184 126350594 -70844838 - MTD LTR MaLR -14 405 1 6 1548 412 267 8 48 chr1 126350775 126350901 -70844531 + RMER5 LTR ERV1 33 153 -381 6 1548 425 321 14 37 chr1 126350981 126351198 -70844234 + B3 SINE B2 5 216 0 6 1548 46 19 0 0 chr1 126351216 126351269 -70844163 + AT_rich Low_complexity Low_complexity 1 53 0 6 1548 954 269 24 48 chr1 126352240 126352619 -70842813 + ORR1D2 LTR MaLR 1 370 0 6 1548 502 332 60 100 chr1 126352705 126352919 -70842513 + B4 SINE B4 2 217 -75 6 1548 348 94 0 0 chr1 126352919 126352972 -70842460 + (CCA)n Simple_repeat Simple_repeat 1 53 0 6 1548 502 332 60 100 chr1 126352972 126353058 -70842374 + B4 SINE B4 218 290 -2 6 1548 375 60 0 0 chr1 126353086 126353136 -70842296 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1549 558 299 68 0 chr1 126353757 126353964 -70841468 - ID_B1 SINE B4 -2 222 2 6 1549 498 124 0 0 chr1 126354199 126354288 -70841144 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 1549 184 100 24 24 chr1 126354366 126354407 -70841025 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1549 1053 296 21 38 chr1 126355253 126355541 -70839891 + B4A SINE B4 8 290 -2 6 1549 792 32 0 0 chr1 126355560 126355655 -70839777 + (TC)n Simple_repeat Simple_repeat 1 95 0 6 1549 245 203 26 26 chr1 126355660 126355736 -70839696 + (CAGA)n Simple_repeat Simple_repeat 4 79 0 6 1549 474 289 40 101 chr1 126356862 126357095 -70838337 - MTE2b LTR MaLR -1 378 160 6 1549 360 0 0 0 chr1 126357628 126357668 -70837764 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1549 255 70 68 14 chr1 126357715 126357788 -70837644 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1549 191 339 108 16 chr1 126358222 126358351 -70837081 + MIR SINE MIR 36 176 -86 6 1549 365 279 104 50 chr1 126358489 126358749 -70836683 + B4A SINE B4 1 274 -18 6 1549 387 0 0 0 chr1 126358955 126358998 -70836434 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1549 611 0 27 0 chr1 126359507 126359581 -70835851 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 6 1549 654 243 26 78 chr1 126359582 126359774 -70835658 - B3A SINE B2 -16 182 1 6 1549 801 129 0 0 chr1 126360071 126360187 -70835245 + B2_Mm2 SINE B2 4 119 -76 6 1549 325 222 98 12 chr1 126360169 126360201 -70835231 + B4A SINE B4 47 135 -157 6 1549 375 80 0 0 chr1 126360201 126360251 -70835181 + B1_Mus1 SINE Alu 2 51 -97 6 1549 2773 54 19 0 chr1 126360251 126360620 -70834812 - L1Md_F2 LINE L1 -592 5990 5615 6 1549 396 0 0 0 chr1 126360710 126360754 -70834678 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1549 2685 248 115 10 chr1 126360757 126361479 -70833953 + Lx5 LINE L1 6250 7047 -3 6 1549 1152 221 107 10 chr1 126361480 126361734 -70833698 + Lx9 LINE L1 7223 7510 -134 6 1549 213 39 0 0 chr1 126361734 126361760 -70833672 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1549 1152 221 107 10 chr1 126361760 126361890 -70833542 + Lx9 LINE L1 7511 7644 0 6 1549 29 28 0 0 chr1 126362503 126362539 -70832893 + AT_rich Low_complexity Low_complexity 1 36 0 6 1549 2836 102 24 0 chr1 126362540 126362953 -70832479 - Lx3_Mus LINE L1 -6 7003 6581 6 1549 5669 99 18 11 chr1 126362953 126363375 -70832057 + Lx3_Mus LINE L1 5622 6035 -974 6 1549 324 0 0 0 chr1 126363375 126363411 -70832021 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 6 1549 5669 184 39 22 chr1 126363411 126364327 -70831105 + Lx3_Mus LINE L1 6027 6996 -1 6 1549 252 0 0 0 chr1 126364419 126364447 -70830985 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1549 999 103 0 0 chr1 126364570 126364706 -70830726 + B1_Mus1 SINE Alu 13 148 0 6 1549 540 0 0 0 chr1 126364902 126364962 -70830470 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1549 203 143 41 0 chr1 126365028 126365077 -70830355 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 6 1549 234 62 0 0 chr1 126365119 126365151 -70830281 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1549 1026 117 0 0 chr1 126365309 126365488 -70829944 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 1549 718 36 71 18 chr1 126365728 126365840 -70829592 + L1Md_F3 LINE L1 6453 6570 -14 6 1549 245 208 0 0 chr1 126366369 126366417 -70829015 - Lx9 LINE L1 -644 7000 6953 6 1549 1930 31 0 0 chr1 126366583 126366809 -70828623 + L1Md_T LINE L1 6356 6581 -1 6 1549 22 35 0 0 chr1 126366823 126366852 -70828580 + AT_rich Low_complexity Low_complexity 1 29 0 6 1549 318 26 0 0 chr1 126367415 126367454 -70827978 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1549 585 276 104 39 chr1 126367491 126367751 -70827681 - B4A SINE B4 -14 278 2 7 1549 343 289 0 0 chr1 126368048 126368124 -70827308 + MTE2b LTR MaLR 8 83 -296 7 1549 1239 231 38 132 chr1 126368179 126368597 -70826835 - MTE2a LTR MaLR 0 379 1 7 1549 394 264 54 35 chr1 126368597 126368799 -70826633 + MTE2b LTR MaLR 104 374 -5 7 1549 289 316 145 58 chr1 126369059 126369301 -70826131 + MLT1D LTR MaLR 325 617 -7 7 1549 455 311 73 78 chr1 126369439 126369631 -70825801 - B3A SINE B2 -2 196 6 7 1549 309 318 89 57 chr1 126369718 126370093 -70825339 + MLT1A LTR MaLR 2 385 -23 7 1549 315 130 39 20 chr1 126370338 126370440 -70824992 + (TA)n Simple_repeat Simple_repeat 1 104 0 7 1549 359 302 137 24 chr1 126370567 126370852 -70824580 - L1MEe LINE L1 -4384 1624 1306 7 1549 404 297 110 39 chr1 126370926 126371080 -70824352 + MTE2b LTR MaLR 40 204 -175 7 1549 685 257 164 9 chr1 126371280 126371598 -70823834 - Lx9 LINE L1 -13 7631 7265 7 1549 2697 31 0 0 chr1 126371822 126372145 -70823287 + IAPEY2_LTR LTR ERVK 32 354 -3 7 1549 668 160 49 49 chr1 126372145 126372309 -70823123 + IAPLTR4_I LTR ERVK 17 180 -1290 7 1549 4139 183 10 12 chr1 126372308 126373115 -70822317 + IAPLTR4_I LTR ERVK 546 1350 -120 7 1549 1495 38 0 0 chr1 126373115 126373299 -70822133 + L1Md_T LINE L1 5403 5586 -297 7 1549 8394 33 3 0 chr1 126373300 126374292 -70821140 + L1Md_T LINE L1 5588 6582 0 7 1549 713 64 0 0 chr1 126374293 126374387 -70821045 + IAPEY3-int LTR ERVK 1313 1406 -6107 7 1549 331 105 0 34 chr1 126374367 126374426 -70821006 + IAPEY3-int LTR ERVK 2633 2689 -4991 7 1549 321 71 0 0 chr1 126374419 126374461 -70820971 + IAPEY3-int LTR ERVK 4852 4893 -2787 7 1549 2021 54 8 0 chr1 126374462 126374721 -70820711 + IAPEY3-int LTR ERVK 7420 7680 0 7 1549 2642 46 0 3 chr1 126374731 126375055 -70820377 + IAPEY2_LTR LTR ERVK 32 354 -3 7 1549 264 253 37 8 chr1 126375392 126375548 -70819884 - L1_Rod LINE L1 -524 5356 5161 7 1549 321 278 48 18 chr1 126375545 126375710 -70819722 + L1MA4 LINE L1 5737 5906 -394 7 1549 289 279 72 22 chr1 126375728 126375867 -70819565 + Lx3C LINE L1 6829 6974 -2 7 1549 397 370 123 0 chr1 126376074 126376317 -70819115 - L1MD LINE L1 -537 5822 5550 7 1549 612 27 0 0 chr1 126376717 126376791 -70818641 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 7 1549 756 187 158 13 chr1 126377418 126377646 -70817786 + Lx6 LINE L1 5686 5946 -1514 7 1549 3234 266 52 4 chr1 126377643 126378544 -70816888 + Lx6 LINE L1 6487 7696 0 7 1549 267 267 0 0 chr1 126378575 126378650 -70816782 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 7 1549 582 276 96 22 chr1 126378651 126378844 -70816588 - B3A SINE B2 -13 203 2 7 1549 572 333 5 73 chr1 126379174 126379394 -70816038 - B3A SINE B2 -6 210 6 7 1549 233 386 86 26 chr1 126379737 126379854 -70815578 - PB1 SINE Alu -3 124 1 7 1549 636 295 5 62 chr1 126379962 126380157 -70815275 - B3 SINE B2 -10 206 23 7 1549 468 319 131 22 chr1 126381009 126381030 -70814402 - B4A SINE B4 -2 290 271 7 1549 414 0 0 0 chr1 126381030 126381076 -70814356 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1549 297 0 0 0 chr1 126381076 126381108 -70814324 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1549 468 319 131 22 chr1 126381108 126381268 -70814164 - B4A SINE B4 -22 270 89 7 1549 609 90 0 0 chr1 126381556 126381645 -70813787 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 1549 346 281 25 17 chr1 126381831 126381946 -70813486 - B3A SINE B2 -71 124 1 7 1549 225 0 0 0 chr1 126382255 126382280 -70813152 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1549 324 64 0 0 chr1 126382770 126382817 -70812615 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 7 1549 557 336 23 28 chr1 126382825 126383032 -70812400 + B3A SINE B2 4 211 -5 7 1549 629 294 19 0 chr1 126384708 126384868 -70810564 + ID_B1 SINE B4 3 165 -59 7 1549 494 241 13 72 chr1 126385225 126385379 -70810053 + MTEa LTR MaLR 201 366 -13 7 1549 699 312 118 28 chr1 126385975 126386321 -70809111 - MTE2a LTR MaLR 0 419 35 7 1549 326 313 19 30 chr1 126386679 126386845 -70808587 + GA-rich Low_complexity Low_complexity 1 164 0 7 1549 894 246 20 5 chr1 126386950 126387154 -70808278 - MTC LTR MaLR -18 403 197 7 1549 756 153 172 0 chr1 126387149 126387306 -70808126 - B2_Mm2 SINE B2 -9 186 3 7 1549 520 292 7 27 chr1 126387306 126387445 -70807987 - MTC LTR MaLR -204 215 80 7 1549 762 43 0 0 chr1 126387444 126387536 -70807896 + U6 snRNA snRNA 16 107 0 7 1549 240 59 29 0 chr1 126387595 126387629 -70807803 - MTC LTR MaLR -375 46 12 7 1549 724 290 92 5 chr1 126389918 126390136 -70805296 + B4A SINE B4 2 238 -54 7 1549 234 0 0 0 chr1 126390139 126390165 -70805267 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1549 576 0 0 0 chr1 126390165 126390228 -70805204 + (GA)n Simple_repeat Simple_repeat 2 65 0 7 1549 1780 50 0 0 chr1 126390408 126390627 -70804805 + L1Md_T LINE L1 6364 6582 0 7 1549 2400 193 17 39 chr1 126390719 126391254 -70804178 - RLTR28 LTR ERVL 0 524 2 7 1549 326 299 241 41 chr1 126391989 126392184 -70803248 + B4 SINE B4 2 235 -57 7 1549 183 42 0 0 chr1 126392292 126392316 -70803116 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1549 557 253 34 62 chr1 126392871 126393048 -70802384 - MER5B DNA MER1_type -6 172 1 7 1549 492 156 0 0 chr1 126393473 126393601 -70801831 + (TG)n Simple_repeat Simple_repeat 1 128 0 7 1549 596 267 30 30 chr1 126394491 126394688 -70800744 + B3A SINE B2 2 198 0 7 1549 242 311 9 36 chr1 126394946 126395056 -70800376 + MER5A1 DNA MER1_type 49 155 -11 7 1549 618 297 27 104 chr1 126395189 126395527 -70799905 + Lx8 LINE L1 6752 7063 -410 7 1549 779 321 117 16 chr1 126396491 126396747 -70798685 + B4A SINE B4 1 282 -10 7 1549 469 288 83 10 chr1 126396967 126397160 -70798272 - Tigger7 DNA MER2_type -30 2461 2256 7 1549 508 370 106 45 chr1 126397258 126397617 -70797815 - Tigger7 DNA MER2_type -2101 390 10 7 1549 2998 236 128 16 chr1 126397976 126398091 -70797341 - Lx6 LINE L1 -5 7455 7314 7 1549 192 40 0 0 chr1 126398091 126398116 -70797316 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1549 2998 236 128 16 chr1 126398116 126398868 -70796564 - Lx6 LINE L1 -147 7313 6491 7 1549 335 267 208 38 chr1 126399389 126399572 -70795860 - B3 SINE B2 -2 214 1 7 1549 265 250 0 0 chr1 126399572 126399628 -70795804 - B4A SINE B4 -62 230 175 7 1549 333 0 0 0 chr1 126400126 126400163 -70795269 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1549 338 57 0 19 chr1 126400163 126400217 -70795215 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1549 299 136 0 17 chr1 126400271 126400331 -70795101 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1549 392 231 25 51 chr1 126400367 126400705 -70794727 + (TATG)n Simple_repeat Simple_repeat 1 329 0 7 1549 366 248 180 23 chr1 126400719 126400847 -70794585 - RSINE1 SINE B4 -16 149 2 7 1549 829 242 35 44 chr1 126400942 126401258 -70794174 - MER5C DNA MER1_type 0 313 1 7 1549 385 299 110 44 chr1 126401360 126401633 -70793799 + B4A SINE B4 1 291 -1 7 1549 1135 72 0 0 chr1 126401769 126401908 -70793524 + B1_Mus1 SINE Alu 1 139 -9 7 1549 735 93 0 0 chr1 126401908 126402026 -70793406 + (CAAAC)n Simple_repeat Simple_repeat 2 119 0 7 1549 487 299 34 27 chr1 126402104 126402252 -70793180 + ID_B1 SINE B4 4 152 -72 7 1549 863 335 84 19 chr1 126402557 126403138 -70792294 + Lx8 LINE L1 6854 7472 -1 7 1549 251 282 18 97 chr1 126403846 126403960 -70791472 - B3 SINE B2 0 216 112 7 1549 1046 135 0 6 chr1 126404028 126404207 -70791225 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1549 5017 172 25 59 chr1 126404218 126405253 -70790179 - Lx4A LINE L1 -2 7056 6057 7 1549 935 239 5 50 chr1 126406051 126406271 -70789161 + B4 SINE B4 81 290 -2 7 1549 552 294 35 70 chr1 126406395 126406596 -70788836 + B3A SINE B2 4 197 -1 7 1549 351 0 0 0 chr1 126407087 126407126 -70788306 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 7 1549 210 105 0 0 chr1 126407414 126407452 -70787980 + (CTA)n Simple_repeat Simple_repeat 1 38 0 7 1549 900 286 17 37 chr1 126407470 126407764 -70787668 - B4 SINE B4 0 292 5 7 1549 2917 172 11 13 chr1 126408863 126409340 -70786092 + RMER13B LTR ERVK 1 476 -432 7 1549 408 340 39 63 chr1 126410438 126410645 -70784787 + B4 SINE B4 10 211 -81 7 1549 459 0 0 0 chr1 126410712 126410763 -70784669 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1549 386 349 106 47 chr1 126410905 126411245 -70784187 + MER54A LTR ERVL 494 853 -48 7 1549 243 133 0 0 chr1 126411978 126412023 -70783409 + (ATG)n Simple_repeat Simple_repeat 2 46 0 7 1549 235 319 26 0 chr1 126413244 126413357 -70782075 + (CATCC)n Simple_repeat Simple_repeat 4 119 0 7 1549 984 276 75 73 chr1 126413365 126413764 -70781668 - MTD LTR MaLR -14 405 6 7 1549 466 326 64 33 chr1 126413869 126414161 -70781271 - MER2 DNA MER2_type -34 311 2 7 1549 973 276 166 30 chr1 126415127 126415209 -70780223 - MTEa LTR MaLR 0 379 299 7 1549 3012 75 0 3 chr1 126415209 126415599 -70779833 - L1_Mus1 LINE L1 0 6567 6179 7 1549 973 276 166 30 chr1 126415599 126415848 -70779584 - MTEa LTR MaLR -81 298 3 7 1549 342 115 0 0 chr1 126415850 126415902 -70779530 + (T)n Simple_repeat Simple_repeat 1 52 0 7 1549 1024 37 0 0 chr1 126416422 126416556 -70778876 - L1Md_T LINE L1 0 6582 6449 7 1549 6599 35 0 4 chr1 126416556 126417380 -70778052 + L1Md_T LINE L1 5623 6443 -139 7 1549 445 323 95 16 chr1 126418117 126418319 -70777113 + B4A SINE B4 3 215 -77 7 1549 1115 32 38 0 chr1 126418319 126418477 -70776955 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 7 1549 445 323 95 16 chr1 126418477 126418526 -70776906 + B4A SINE B4 216 273 -19 7 1549 358 301 117 82 chr1 126418827 126419109 -70776323 + B4A SINE B4 1 292 0 7 1549 213 39 0 0 chr1 126419111 126419137 -70776295 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1549 464 0 18 0 chr1 126419137 126419192 -70776240 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1549 723 244 90 20 chr1 126419773 126419974 -70775458 + B3 SINE B2 1 215 -1 7 1549 704 326 18 40 chr1 126420165 126420440 -70774992 + B4A SINE B4 24 292 0 7 1549 327 380 42 42 chr1 126421192 126421310 -70774122 + MTD LTR MaLR 163 280 -139 7 1549 1494 248 99 54 chr1 126421314 126421399 -70774033 - Lx7 LINE L1 -186 7510 7424 7 1549 906 36 0 0 chr1 126421399 126421509 -70773923 + (TC)n Simple_repeat Simple_repeat 1 110 0 7 1549 228 35 0 0 chr1 126421511 126421540 -70773892 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1549 1494 248 99 54 chr1 126421540 126422026 -70773406 - Lx7 LINE L1 -273 7423 6910 7 1549 927 134 0 7 chr1 126422021 126422171 -70773261 - Lx4A LINE L1 -547 6511 6363 8 1549 1163 197 16 16 chr1 126422172 126422425 -70773007 + Lx9 LINE L1 7206 7458 -186 8 1549 261 0 0 0 chr1 126422431 126422460 -70772972 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1549 377 231 0 9 chr1 126422473 126422578 -70772854 + Lx9 LINE L1 7534 7637 -7 8 1549 237 261 46 0 chr1 126423808 126423863 -70771569 + MTD LTR MaLR 255 312 -58 7 1549 681 337 63 22 chr1 126423863 126424179 -70771253 + MTD LTR MaLR 1 329 -90 8 1549 22 56 0 0 chr1 126424543 126424579 -70770853 + AT_rich Low_complexity Low_complexity 1 36 0 8 1549 720 280 96 33 chr1 126424922 126425192 -70770240 - B4A SINE B4 -4 288 2 8 1549 336 341 30 15 chr1 126426030 126426164 -70769268 + MIR3 SINE MIR 64 199 -9 8 1549 452 258 116 29 chr1 126426300 126426472 -70768960 + MER3 DNA MER1_type 4 190 -19 8 1549 611 301 68 0 chr1 126426857 126427020 -70768412 + MTEa LTR MaLR 139 312 -67 8 1549 220 159 35 17 chr1 126427027 126427142 -70768290 + A-rich Low_complexity Low_complexity 4 120 0 8 1549 23 33 0 0 chr1 126427596 126427626 -70767806 + AT_rich Low_complexity Low_complexity 1 30 0 8 1549 1017 296 33 10 chr1 126427862 126428166 -70767266 - ORR1D1 LTR MaLR 0 374 64 8 1549 421 208 40 14 chr1 126428174 126428298 -70767134 - Lx4B LINE L1 -76 6982 6770 8 1549 519 245 87 47 chr1 126428334 126428484 -70766948 - ORR1D1 LTR MaLR -218 156 1 8 1549 473 309 147 7 chr1 126428719 126428869 -70766563 + B3 SINE B2 2 172 -44 8 1549 25 0 0 0 chr1 126428902 126428927 -70766505 + AT_rich Low_complexity Low_complexity 1 25 0 8 1549 1006 287 89 30 chr1 126429118 126429455 -70765977 - ORR1E LTR MaLR 0 359 3 8 1549 22 35 0 0 chr1 126429478 126429507 -70765925 + AT_rich Low_complexity Low_complexity 1 29 0 8 1549 39 60 0 0 chr1 126429637 126429704 -70765728 + AT_rich Low_complexity Low_complexity 1 67 0 8 1549 337 295 13 32 chr1 126430366 126430520 -70764912 + CT-rich Low_complexity Low_complexity 4 154 0 8 1549 345 397 8 8 chr1 126432054 126432186 -70763246 + B1F SINE Alu 10 141 -8 8 1549 1120 52 15 0 chr1 126432832 126432967 -70762465 + B1_Mm SINE Alu 4 140 -7 8 1549 1130 112 6 0 chr1 126432971 126433149 -70762283 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 8 1549 249 268 61 18 chr1 126433329 126433443 -70761989 - Lx8 LINE L1 -411 7062 6944 8 1549 540 281 143 0 chr1 126433432 126433635 -70761797 + Lx8 LINE L1 7092 7323 -150 8 1549 214 226 16 16 chr1 126433699 126433762 -70761670 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 8 1549 323 277 63 121 chr1 126433851 126434025 -70761407 - B3A SINE B2 -10 185 22 8 1549 760 261 150 16 chr1 126434024 126434289 -70761143 - ORR1D1 LTR MaLR -60 299 1 8 1549 219 364 67 11 chr1 126434393 126434571 -70760861 - MIR SINE MIR -73 189 2 8 1549 683 295 68 18 chr1 126434664 126434885 -70760547 + B4 SINE B4 1 232 -60 8 1549 216 97 0 0 chr1 126435203 126435234 -70760198 + (CCA)n Simple_repeat Simple_repeat 1 31 0 8 1549 833 0 10 0 chr1 126435324 126435421 -70760011 + (GA)n Simple_repeat Simple_repeat 2 99 0 8 1549 186 43 0 0 chr1 126435757 126435780 -70759652 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1549 1867 224 53 2 chr1 126436097 126436495 -70758937 - MTD LTR MaLR -1 418 1 8 1549 743 282 151 7 chr1 126436512 126436623 -70758809 + MTD LTR MaLR 85 199 -220 8 1549 1705 110 79 29 chr1 126436623 126436903 -70758529 + Lx LINE L1 6355 6648 -6 8 1549 743 282 151 7 chr1 126436903 126437070 -70758362 + MTD LTR MaLR 200 402 -17 8 1549 184 170 19 19 chr1 126437367 126437421 -70758011 + GA-rich Low_complexity Low_complexity 5 58 0 8 1549 455 305 84 0 chr1 126438152 126438283 -70757149 - RSINE1 SINE B4 -21 144 3 8 1549 257 239 0 29 chr1 126439638 126439707 -70755725 - MLT1B LTR MaLR -30 344 278 8 1549 737 247 27 0 chr1 126439814 126439964 -70755468 + B3A SINE B2 1 154 -44 8 1549 906 10 0 0 chr1 126439981 126440084 -70755348 + (CA)n Simple_repeat Simple_repeat 2 104 0 8 1549 275 325 24 11 chr1 126440094 126440220 -70755212 - MLT1B LTR MaLR -225 165 35 8 1549 352 35 35 17 chr1 126440992 126441050 -70754382 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 8 1549 4549 138 23 4 chr1 126441779 126442906 -70752526 + L1Md_F LINE L1 384 1535 -4348 8 1549 7092 76 2 2 chr1 126442896 126443875 -70751557 + L1_Mus1 LINE L1 5589 6567 0 8 1549 459 0 0 0 chr1 126443971 126444022 -70751410 + (TTA)n Simple_repeat Simple_repeat 1 51 0 8 1549 180 0 0 0 chr1 126444022 126444042 -70751390 + (CTG)n Simple_repeat Simple_repeat 2 21 0 8 1549 439 278 161 10 chr1 126444049 126444242 -70751190 - ID_B1 SINE B4 -2 222 1 8 1549 795 275 38 69 chr1 126444529 126444791 -70750641 - MTE2b LTR MaLR -122 257 4 8 1549 375 23 0 0 chr1 126444942 126444986 -70750446 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1549 538 278 14 67 chr1 126446836 126447044 -70748388 - B3A SINE B2 0 198 2 8 1549 387 340 46 32 chr1 126447188 126447407 -70748025 - MIRb SINE MIR -7 261 40 8 1549 507 291 0 3 chr1 126448004 126448350 -70747082 + (TA)n Simple_repeat Simple_repeat 1 344 0 8 1549 245 324 9 18 chr1 126448796 126448909 -70746523 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 8 1549 468 0 0 0 chr1 126448911 126448963 -70746469 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1549 1026 281 31 4 chr1 126449332 126449593 -70745839 + MTEa LTR MaLR 1 268 -111 8 1549 4434 181 29 25 chr1 126449754 126450658 -70744774 - RMER13B LTR ERVK -1 907 1 8 1549 367 260 39 144 chr1 126452016 126452196 -70743236 + B3 SINE B2 6 166 -29 8 1549 634 318 0 0 chr1 126453155 126453334 -70742098 - B3A SINE B2 -19 179 1 8 1549 24 53 0 0 chr1 126453335 126453373 -70742059 + AT_rich Low_complexity Low_complexity 1 38 0 8 1549 332 303 203 54 chr1 126453479 126453720 -70741712 + B4 SINE B4 5 281 -11 8 1549 492 160 0 0 chr1 126453742 126453842 -70741590 + (CA)n Simple_repeat Simple_repeat 2 101 0 8 1549 291 293 26 13 chr1 126454512 126454588 -70740844 + RSINE1 SINE B4 2 78 -87 8 1549 22 70 0 0 chr1 126454665 126454708 -70740724 + AT_rich Low_complexity Low_complexity 1 43 0 8 1549 594 251 107 17 chr1 126455019 126455197 -70740235 + B3A SINE B2 1 194 -4 8 1549 502 306 75 0 chr1 126455646 126455845 -70739587 + ID_B1 SINE B4 3 216 -8 8 1549 2289 67 0 0 chr1 126455845 126456161 -70739271 + L1Md_A LINE L1 6266 6581 -1 8 1549 528 280 106 10 chr1 126456295 126456598 -70738834 + Lx9 LINE L1 7312 7643 -1 8 1549 654 283 24 73 chr1 126457247 126457453 -70737979 + B3A SINE B2 2 197 -1 8 1549 7658 28 0 1 chr1 126457821 126458723 -70736709 + L1Md_A LINE L1 5682 6582 0 8 1549 951 57 0 0 chr1 126458806 126458928 -70736504 + (TC)n Simple_repeat Simple_repeat 2 123 0 8 1549 281 26 26 0 chr1 126458928 126458965 -70736467 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1549 1851 194 81 30 chr1 126459444 126459535 -70735897 + MTC LTR MaLR 1 123 -298 8 1549 282 29 0 0 chr1 126459535 126459570 -70735862 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1549 1851 194 81 30 chr1 126459570 126459871 -70735561 + MTC LTR MaLR 124 413 -8 8 1549 384 373 18 53 chr1 126459842 126460012 -70735420 + B4 SINE B4 30 193 -99 8 1549 477 0 0 0 chr1 126460084 126460137 -70735295 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1549 463 337 44 11 chr1 126460158 126460341 -70735091 + B3A SINE B2 1 189 -9 8 1549 21 0 0 0 chr1 126460347 126460368 -70735064 + AT_rich Low_complexity Low_complexity 1 21 0 8 1549 1345 196 0 123 chr1 126460739 126461048 -70734384 + ORR1B2 LTR MaLR 3 273 -94 8 1549 2146 85 6 6 chr1 126461048 126461404 -70734028 - MusHAL1 LINE L1 -2331 381 26 8 1549 1369 150 16 16 chr1 126461404 126461654 -70733778 + Lx2 LINE L1 6747 6996 -1 8 1549 227 167 0 0 chr1 126461664 126461706 -70733726 + ORR1B2 LTR MaLR 266 307 -71 8 1549 427 278 191 30 chr1 126461751 126462045 -70733387 - MTE2a LTR MaLR -53 326 6 8 1549 22 0 0 0 chr1 126462125 126462147 -70733285 + AT_rich Low_complexity Low_complexity 1 22 0 8 1549 564 283 88 20 chr1 126462160 126462409 -70733023 - Lx8 LINE L1 -33 7440 7175 8 1549 620 253 20 40 chr1 126462406 126462608 -70732824 + Lx8 LINE L1 6924 7121 -352 8 1549 191 155 117 33 chr1 126462776 126462836 -70732596 + L4 LINE RTE 649 713 -1316 8 1549 367 337 98 15 chr1 126463482 126463747 -70731685 + B4A SINE B4 4 290 -2 8 1549 537 356 93 26 chr1 126463971 126464239 -70731193 + B4A SINE B4 1 286 -6 8 1549 664 254 182 39 chr1 126464339 126464668 -70730764 + Lx9 LINE L1 7134 7482 -162 8 1549 570 41 0 0 chr1 126464668 126464741 -70730691 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 1549 664 254 182 39 chr1 126464741 126464850 -70730582 + Lx9 LINE L1 7483 7635 -9 8 1549 709 335 38 34 chr1 126464856 126465094 -70730338 + B4A SINE B4 54 292 0 8 1549 600 260 58 80 chr1 126465150 126465338 -70730094 - B3A SINE B2 -13 185 2 8 1549 200 256 0 0 chr1 126466138 126466177 -70729255 + polypurine Low_complexity Low_complexity 1 39 0 8 1549 801 324 23 38 chr1 126466216 126466482 -70728950 + B4A SINE B4 23 284 -8 8 1549 411 21 0 0 chr1 126466530 126466578 -70728854 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1549 200 316 0 0 chr1 126466707 126466764 -70728668 - MER5A DNA MER1_type -85 104 48 8 1549 982 302 76 20 chr1 126466835 126467159 -70728273 - Lx8 LINE L1 -2 7471 7116 8 1549 435 52 0 0 chr1 126467159 126467217 -70728215 + (TTAG)n Simple_repeat Simple_repeat 3 60 0 8 1549 1536 113 68 4 chr1 126467217 126467326 -70728106 - Lx LINE L1 -10 6644 6537 8 1549 234 0 0 0 chr1 126467326 126467352 -70728080 + (CCCA)n Simple_repeat Simple_repeat 4 29 0 8 1549 1536 113 68 4 chr1 126467352 126467491 -70727941 - Lx LINE L1 -118 6536 6382 8 1549 982 302 76 20 chr1 126467491 126467611 -70727821 - Lx8 LINE L1 -358 7115 7002 8 1549 380 323 23 16 chr1 126468007 126468136 -70727296 + RMER15 LTR ERVL 1 130 -445 8 1549 1717 144 3 0 chr1 126468152 126468437 -70726995 - L1_Mus4 LINE L1 -356 6280 5995 8 1549 2372 106 3 6 chr1 126468437 126468789 -70726643 + L1_Mus4 LINE L1 6283 6633 -3 8 1549 623 167 41 90 chr1 126469511 126469656 -70725776 + B1_Mus1 SINE Alu 3 140 -8 8 1549 456 333 24 0 chr1 126469810 126470017 -70725415 - B3 SINE B2 0 216 5 9 1549 31 0 0 0 chr1 126470045 126470076 -70725356 + AT_rich Low_complexity Low_complexity 1 31 0 9 1549 21 36 0 0 chr1 126470192 126470220 -70725212 + AT_rich Low_complexity Low_complexity 1 28 0 9 1549 3700 54 6 0 chr1 126470416 126470897 -70724535 - L1Md_F2 LINE L1 -193 6389 5906 9 1549 297 0 0 0 chr1 126471330 126471363 -70724069 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1549 873 290 17 43 chr1 126471382 126471681 -70723751 - B4 SINE B4 0 292 2 9 1549 276 222 185 17 chr1 126471932 126472051 -70723381 - MER63B DNA AcHobo -1 435 297 9 1549 637 269 39 0 chr1 126472195 126472351 -70723081 + RSINE1 SINE B4 4 165 0 9 1549 23 50 0 48 chr1 126472354 126472417 -70723015 + AT_rich Low_complexity Low_complexity 1 60 0 9 1549 274 258 75 15 chr1 126472426 126472493 -70722939 + ID4_ SINE ID 9 79 -4 9 1549 431 293 42 17 chr1 126472598 126472834 -70722598 + L1MA4 LINE L1 5695 5936 -364 9 1549 475 323 58 6 chr1 126474027 126474183 -70721249 + RSINE1 SINE B4 2 165 0 9 1549 228 275 168 42 chr1 126474479 126474574 -70720858 + B3A SINE B2 23 129 -69 9 1549 576 0 0 0 chr1 126474615 126474679 -70720753 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 1549 716 286 13 82 chr1 126474802 126475034 -70720398 + B4 SINE B4 76 291 -1 9 1549 539 85 0 12 chr1 126475083 126475166 -70720266 + (GGAA)n Simple_repeat Simple_repeat 2 83 0 9 1549 457 285 8 23 chr1 126475358 126475491 -70719941 - RLTR16 LTR ERVK -374 131 1 9 1549 710 331 34 40 chr1 126475502 126475798 -70719634 + MLT2B2 LTR ERVL 1 294 -221 9 1549 991 306 95 3 chr1 126475808 126476133 -70719299 - ORR1D2 LTR MaLR -15 355 1 9 1549 1056 266 104 23 chr1 126476158 126476505 -70718927 + MTE2b LTR MaLR 3 377 -2 9 1549 346 340 39 0 chr1 126476532 126476688 -70718744 + MLT2B2 LTR ERVL 399 560 -2 9 1549 201 74 0 0 chr1 126476767 126476794 -70718638 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1549 864 291 18 14 chr1 126476809 126477032 -70718400 + ID_B1 SINE B4 1 224 0 9 1549 735 257 44 39 chr1 126477616 126477867 -70717565 - MTE2a LTR MaLR -14 405 191 9 1549 2613 81 11 6 chr1 126477867 126478226 -70717206 - L1_Mus2 LINE L1 0 6566 6206 9 1549 645 304 53 114 chr1 126478226 126478418 -70717014 - MTE2a LTR MaLR -229 190 1 9 1549 337 297 19 19 chr1 126479191 126479294 -70716138 + MTE2a LTR MaLR 275 377 -2 9 1549 791 239 36 21 chr1 126479726 126479918 -70715514 - B3A SINE B2 -1 197 3 9 1549 3368 38 2 0 chr1 126480448 126480843 -70714589 + MTA_Mm LTR MaLR 1 396 0 9 1549 810 30 0 0 chr1 126482151 126482252 -70713180 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 9 1549 405 0 0 0 chr1 126483282 126483327 -70712105 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1549 405 0 0 0 chr1 126483327 126483371 -70712061 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1549 368 263 110 0 chr1 126483922 126484040 -70711392 + Lx8 LINE L1 6982 7112 -361 9 1549 1017 235 138 24 chr1 126484042 126484289 -70711143 + Lx9 LINE L1 7224 7520 -124 9 1549 616 94 19 0 chr1 126484289 126484395 -70711037 + (CA)n Simple_repeat Simple_repeat 2 109 0 9 193 1017 235 138 24 chr1 126484395 126484517 -70710915 + Lx9 LINE L1 7521 7634 -10 9 1550 232 301 88 88 chr1 126484556 126484807 -70710625 + Lx8 LINE L1 7206 7456 -17 9 1550 543 286 11 81 chr1 126485601 126485787 -70709645 + B3A SINE B2 26 198 0 9 1550 268 299 73 57 chr1 126485987 126486111 -70709321 + MLT1E2 LTR MaLR 434 559 -68 9 1550 498 228 63 126 chr1 126486033 126486239 -70709193 + B4A SINE B4 100 292 0 9 1550 345 47 0 0 chr1 126486265 126486308 -70709124 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1550 1340 25 16 25 chr1 126486317 126486563 -70708869 + (TAGA)n Simple_repeat Simple_repeat 1 243 0 9 1550 582 133 28 28 chr1 126486575 126486753 -70708679 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 9 1550 528 296 24 0 chr1 126487094 126487219 -70708213 + RSINE1 SINE B4 5 132 -33 9 1550 522 308 83 0 chr1 126487389 126487545 -70707887 - ID_B1 SINE B4 -4 220 52 9 1550 419 327 0 0 chr1 126488744 126488848 -70706584 - B3A SINE B2 -94 104 1 9 1550 198 319 139 25 chr1 126489229 126489351 -70706081 - MIR SINE MIR 0 262 127 9 1550 1236 269 62 9 chr1 126490397 126490735 -70704697 + MTEa LTR MaLR 5 360 -19 9 1550 477 0 0 0 chr1 126491188 126491241 -70704191 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1550 943 245 101 35 chr1 126492024 126492371 -70703061 - ORR1D2 LTR MaLR 0 370 1 9 1550 825 250 213 6 chr1 126492425 126492739 -70702693 - MTE2b LTR MaLR 0 379 1 9 1550 24 0 0 0 chr1 126493300 126493324 -70702108 + AT_rich Low_complexity Low_complexity 1 24 0 9 1550 228 282 80 18 chr1 126493329 126493441 -70701991 - Lx8 LINE L1 -2 7471 7353 9 1550 521 293 101 22 chr1 126493652 126493879 -70701553 - Lx8 LINE L1 -412 7061 6817 9 1550 581 162 0 9 chr1 126494123 126494235 -70701197 + CT-rich Low_complexity Low_complexity 1 111 0 9 1550 279 0 0 0 chr1 126494235 126494266 -70701166 + (TA)n Simple_repeat Simple_repeat 2 32 0 9 1550 332 370 16 16 chr1 126494579 126494708 -70700724 + B4A SINE B4 8 136 -156 9 1550 492 18 0 0 chr1 126494711 126494768 -70700664 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 9 1550 233 283 17 0 chr1 126494802 126494862 -70700570 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1550 376 162 22 101 chr1 126494862 126494951 -70700481 + HAL1-3A_ME LINE L1 1976 2057 -801 9 1550 385 298 60 92 chr1 126495864 126495941 -70699491 + B4A SINE B4 3 84 -208 9 1550 726 96 0 0 chr1 126495941 126496045 -70699387 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 9 1550 385 298 60 92 chr1 126496045 126496248 -70699184 + B4A SINE B4 85 273 -19 9 1550 346 254 97 40 chr1 126496368 126496544 -70698888 + MER5A DNA MER1_type 2 187 -2 9 1550 470 318 33 0 chr1 126497075 126497226 -70698206 + RSINE1 SINE B4 2 157 -8 9 1550 402 329 84 0 chr1 126497524 126497667 -70697765 + B4 SINE B4 15 169 -123 9 1550 293 180 0 62 chr1 126497778 126497843 -70697589 - MT2A LTR ERVL -465 68 8 9 1550 354 91 0 0 chr1 126497845 126497900 -70697532 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1550 1452 225 18 15 chr1 126498365 126498699 -70696733 + Lx5 LINE L1 6137 6471 -579 9 1550 702 246 82 35 chr1 126498691 126498923 -70696509 - Lx5 LINE L1 -1 7049 6807 9 1550 1078 235 71 5 chr1 126498930 126499249 -70696183 + Lx5 LINE L1 6493 6887 -171 9 1550 916 242 29 50 chr1 126499249 126499488 -70695944 + MTE2b LTR MaLR 146 379 0 9 1550 451 360 90 43 chr1 126500723 126501002 -70694430 - B4A SINE B4 0 292 1 1 1550 2695 42 9 0 chr1 126501209 126501544 -70693888 + ORR1A0 LTR MaLR 1 338 -8 2 1550 266 331 107 12 chr1 126501972 126502140 -70693292 + RMER15 LTR ERVL 386 569 -6 3 1550 525 147 0 0 chr1 126502178 126502273 -70693159 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 1550 558 274 100 86 chr1 126502275 126502554 -70692878 - B4A SINE B4 0 292 10 5 1550 225 0 0 0 chr1 126503115 126503140 -70692292 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1550 729 330 49 49 chr1 126503161 126503406 -70692026 - B4A SINE B4 -1 291 47 7 1550 371 288 35 26 chr1 126503940 126504054 -70691378 - B4 SINE B4 -175 117 3 8 1550 1050 258 51 99 chr1 126504216 126504611 -70690821 + MTE2a LTR MaLR 4 379 0 9 1550 205 211 0 0 chr1 126504859 126504897 -70690535 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1550 354 123 0 0 chr1 126504900 126504957 -70690475 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 1 1550 396 0 0 0 chr1 126505618 126505662 -70689770 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1550 567 315 18 18 chr1 126505671 126505842 -70689590 - B4A SINE B4 -121 171 1 1 1550 615 281 86 5 chr1 126506021 126506207 -70689225 - ID_B1 SINE B4 -1 223 23 1 1550 2294 208 47 43 chr1 126506209 126506763 -70688669 + RLTR20B3 LTR ERVK 21 576 -1 1 1550 199 281 17 17 chr1 126507223 126507281 -70688151 - MER5B DNA MER1_type -31 147 90 1 1550 370 271 177 28 chr1 126507386 126507764 -70687668 - RMER15 LTR ERVL -14 561 1 1 1550 647 328 15 31 chr1 126508001 126508196 -70687236 + B3A SINE B2 3 194 -4 1 1550 1046 246 104 52 chr1 126508962 126509271 -70686161 - MTD LTR MaLR -20 399 75 1 1550 3512 18 2 0 chr1 126509445 126509840 -70685592 + MTA_Mm LTR MaLR 1 396 0 2 1550 658 254 13 27 chr1 126509957 126510107 -70685325 - B3 SINE B2 0 216 69 2 1550 490 304 89 0 chr1 126510842 126510977 -70684455 + B3 SINE B2 2 148 -68 2 1550 450 0 0 0 chr1 126510997 126511047 -70684385 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1550 240 215 185 0 chr1 126511170 126511235 -70684197 - ID_B1 SINE B4 -1 223 147 2 1550 495 0 0 0 chr1 126511996 126512051 -70683381 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1550 781 284 38 19 chr1 126512325 126512537 -70682895 + B4A SINE B4 4 219 -73 2 1550 226 137 19 38 chr1 126512537 126512590 -70682842 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 2 1550 937 315 98 11 chr1 126512913 126513260 -70682172 - MTE2a LTR MaLR -2 377 1 2 1550 566 306 22 0 chr1 126514025 126514159 -70681273 + B3A SINE B2 24 160 -38 2 1550 291 157 0 0 chr1 126514162 126514213 -70681219 + (CAA)n Simple_repeat Simple_repeat 3 53 0 3 1550 303 71 0 0 chr1 126514210 126514252 -70681180 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1550 1122 103 0 6 chr1 126514384 126514560 -70680872 + L1_Mus4 LINE L1 6459 6633 -3 3 1550 626 224 76 54 chr1 126514562 126514746 -70680686 - B3A SINE B2 -6 192 5 3 1550 187 330 68 0 chr1 126514839 126514927 -70680505 - MIRm SINE MIR -137 139 46 3 1550 1046 324 53 40 chr1 126514958 126515421 -70680011 + Charlie1a DNA MER1_type 7 467 -988 3 1550 510 17 0 0 chr1 126515421 126515480 -70679952 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1550 225 0 0 0 chr1 126515480 126515504 -70679928 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1550 1046 324 53 40 chr1 126515504 126515620 -70679812 + Charlie1a DNA MER1_type 468 594 -861 3 1550 586 249 36 36 chr1 126515741 126515937 -70679495 - B3A SINE B2 -2 196 1 3 1550 730 184 36 29 chr1 126515968 126516108 -70679324 - B1_Mur3 SINE Alu 0 149 9 3 1550 356 294 54 78 chr1 126516108 126516134 -70679298 - ID_B1 SINE B4 0 224 63 4 1550 242 242 31 31 chr1 126517071 126517135 -70678297 + Lx8 LINE L1 7156 7219 -254 4 1550 293 344 0 21 chr1 126517152 126517247 -70678185 + RMER15 LTR ERVL 373 465 -110 4 1550 1010 313 81 25 chr1 126517334 126517813 -70677619 - Lx5 LINE L1 -39 7011 6506 4 1550 2688 239 25 3 chr1 126517859 126518863 -70676569 - Lx5 LINE L1 -699 6351 5312 4 1550 7813 170 18 76 chr1 126518873 126519380 -70676052 + L1_Mur2 LINE L1 3509 4012 -1865 4 1550 4941 63 5 6 chr1 126519380 126520019 -70675413 + L1Md_F2 LINE L1 5933 6570 -12 4 1550 7813 170 18 76 chr1 126520019 126521400 -70674032 + L1_Mur2 LINE L1 4013 5286 -591 4 1550 198 208 18 54 chr1 126521576 126521632 -70673800 + L3 LINE CR1 1044 1097 -3392 4 1550 25 31 0 0 chr1 126522044 126522076 -70673356 + AT_rich Low_complexity Low_complexity 1 32 0 4 1550 694 306 11 22 chr1 126522076 126522260 -70673172 + B3A SINE B2 2 183 -15 4 1550 906 278 4 4 chr1 126522600 126522856 -70672576 + RMER1B Other Other 592 847 -219 4 1550 226 275 32 21 chr1 126522894 126522987 -70672445 + L1MC5 LINE L1 6678 6771 -1190 5 1550 874 324 53 15 chr1 126523132 126523398 -70672034 + B4 SINE B4 13 288 -4 5 1550 1979 134 6 21 chr1 126523421 126523755 -70671677 + L1_Mus3 LINE L1 6308 6636 -2 5 1550 22 35 0 0 chr1 126523780 126523809 -70671623 + AT_rich Low_complexity Low_complexity 1 29 0 5 1550 745 40 20 0 chr1 126524724 126524825 -70670607 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 5 1550 564 185 171 32 chr1 126524833 126524956 -70670476 - B1_Mus1 SINE Alu -7 141 2 5 1550 487 319 9 105 chr1 126525706 126525916 -70669516 - RMER30 DNA MER1_type -3 199 10 5 1550 234 0 0 0 chr1 126527429 126527455 -70667977 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 5 1550 523 356 45 11 chr1 126528063 126528239 -70667193 - B3A SINE B2 -16 182 1 5 1550 25 0 0 0 chr1 126528241 126528266 -70667166 + AT_rich Low_complexity Low_complexity 1 25 0 5 1550 26 50 0 0 chr1 126528638 126528678 -70666754 + AT_rich Low_complexity Low_complexity 1 40 0 6 1550 6319 31 27 0 chr1 126528953 126529704 -70665728 - L1Md_T LINE L1 -1 6581 5811 6 1550 2298 120 26 0 chr1 126529829 126530178 -70665254 - Lx LINE L1 -7 6647 6290 6 1550 266 159 0 0 chr1 126530511 126530555 -70664877 + A-rich Low_complexity Low_complexity 1 44 0 6 1550 381 131 0 0 chr1 126531725 126531786 -70663646 + (CATA)n Simple_repeat Simple_repeat 3 63 0 6 1550 441 0 0 0 chr1 126531803 126531852 -70663580 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 6 1550 1413 142 51 13 chr1 126532114 126532350 -70663082 - Lx LINE L1 -174 6480 6236 6 1550 2983 96 46 0 chr1 126532350 126532787 -70662645 + L1_Mus3 LINE L1 6174 6630 -8 6 1550 372 108 60 0 chr1 126532812 126532895 -70662537 + GA-rich Low_complexity Low_complexity 4 91 0 6 1550 324 338 49 55 chr1 126532903 126533066 -70662366 - RSINE1 SINE B4 0 165 4 6 1550 671 64 284 0 chr1 126533288 126533397 -70662035 + B1_Mus2 SINE Alu 5 144 -3 7 1550 306 0 0 0 chr1 126533397 126533431 -70662001 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 7 1550 38 0 0 0 chr1 126533481 126533519 -70661913 + AT_rich Low_complexity Low_complexity 1 38 0 7 1550 373 355 54 33 chr1 126534613 126534874 -70660558 + B4A SINE B4 6 276 -16 7 1550 478 260 63 42 chr1 126536493 126536682 -70658750 + B3A SINE B2 1 193 -5 7 1550 4887 198 119 2 chr1 126536863 126538044 -70657388 - Lx9 LINE L1 -6 7638 6319 7 1550 2795 55 5 52 chr1 126538298 126538703 -70656729 + RLTR10 LTR ERVK 1 386 -4 7 1550 7586 45 1 2 chr1 126538719 126539678 -70655754 + RLTR10-int LTR ERVK 41 998 -989 7 1550 292 248 62 39 chr1 126539742 126539872 -70655560 + RLTR10-int LTR ERVK 1462 1594 -5987 7 1550 8223 21 9 1 chr1 126539954 126540941 -70654491 + RLTR10-int LTR ERVK 990 1984 -3 7 1550 2781 57 5 52 chr1 126540943 126541348 -70654084 + RLTR10 LTR ERVK 1 386 -4 7 1550 385 275 9 29 chr1 126541436 126541541 -70653891 + B4A SINE B4 190 292 0 7 1550 432 130 0 0 chr1 126541573 126541642 -70653790 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1550 253 258 65 0 chr1 126541832 126541894 -70653538 + LTR88a LTR Gypsy 226 291 -525 7 1550 306 323 33 114 chr1 126542132 126542163 -70653269 - B2_Mm2 SINE B2 -2 193 170 8 1550 243 0 0 0 chr1 126542163 126542190 -70653242 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1550 660 323 33 114 chr1 126542190 126542368 -70653064 - B3A SINE B2 -27 171 1 8 1550 357 322 11 0 chr1 126542661 126542751 -70652681 - RSINE1 SINE B4 -72 93 3 8 1550 432 165 0 12 chr1 126543167 126543253 -70652179 - Lx6 LINE L1 -9 7451 7367 8 1550 279 0 0 0 chr1 126543314 126543345 -70652087 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1550 256 317 107 8 chr1 126543378 126543499 -70651933 - B2_Mm2 SINE B2 -61 134 2 8 1550 543 31 0 0 chr1 126544380 126544445 -70650987 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1550 251 273 231 6 chr1 126544744 126544917 -70650515 + ID_B1 SINE B4 4 215 -9 8 1550 366 61 0 0 chr1 126544927 126544976 -70650456 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1550 495 0 0 0 chr1 126544976 126545030 -70650402 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1550 836 348 25 0 chr1 126545064 126545340 -70650092 + B4A SINE B4 10 292 0 9 1550 624 27 0 0 chr1 126545766 126545840 -70649592 + (GA)n Simple_repeat Simple_repeat 2 75 0 9 1550 336 383 16 8 chr1 126546797 126546918 -70648514 - B4A SINE B4 -170 122 1 9 1550 216 0 0 0 chr1 126547118 126547142 -70648290 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1550 1463 71 32 19 chr1 126547145 126547361 -70648071 - L1Md_F2 LINE L1 0 6582 6364 9 1550 331 78 0 0 chr1 126547361 126547412 -70648020 + L1Md_F3 LINE L1 5930 5980 -604 9 1550 262 375 71 48 chr1 126548002 126548212 -70647220 - B4 SINE B4 -23 269 55 9 1550 1167 68 0 13 chr1 126548300 126548449 -70646983 + B1_Mus1 SINE Alu 1 147 -1 9 1550 566 338 53 2 chr1 126549532 126549732 -70645700 - B3A SINE B2 -1 215 8 9 1550 896 303 34 22 chr1 126550246 126550513 -70644919 - B4A SINE B4 -12 280 11 9 1550 215 296 70 0 chr1 126550805 126550876 -70644556 - L3 LINE CR1 -2287 2202 2127 1 1550 711 281 0 199 chr1 126551982 126552218 -70643214 + B3A SINE B2 2 210 -6 1 1550 277 288 0 0 chr1 126553455 126553521 -70641911 + B4A SINE B4 4 69 -223 1 1550 1271 250 62 24 chr1 126553680 126554020 -70641412 - ORR1E LTR MaLR -6 353 1 1 1550 429 20 0 0 chr1 126554814 126554864 -70640568 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1550 276 30 0 0 chr1 126554866 126554899 -70640533 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1550 663 286 102 79 chr1 126554906 126555172 -70640260 - B4A SINE B4 -10 282 11 1 1550 699 369 81 38 chr1 126556045 126556549 -70638883 + MER68 LTR ERVL 22 547 -16 1 1550 4281 62 0 0 chr1 126557128 126557663 -70637769 + L1Md_F2 LINE L1 6036 6570 -12 1 1550 1088 272 84 26 chr1 126559240 126559587 -70635845 - MTE2b LTR MaLR 0 379 13 1 1550 279 0 0 0 chr1 126560182 126560213 -70635219 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1550 207 0 0 0 chr1 126560213 126560235 -70635197 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1550 442 343 89 19 chr1 126560664 126561061 -70634371 + L1MEf LINE L1 752 1154 -5046 1 1550 243 173 38 19 chr1 126561256 126561309 -70634123 + ID_B1 SINE B4 126 179 -45 1 1550 618 318 0 20 chr1 126561316 126561467 -70633965 + RSINE1 SINE B4 3 150 -15 1 1550 469 323 82 35 chr1 126561969 126562139 -70633293 + B4A SINE B4 22 199 -93 1 1550 345 24 0 0 chr1 126562317 126562359 -70633073 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1550 1673 219 36 11 chr1 126563863 126564228 -70631204 + ORR1D1 LTR MaLR 1 374 0 1 1550 382 115 39 0 chr1 126564571 126564649 -70630783 + GA-rich Low_complexity Low_complexity 2 82 0 1 1550 252 0 0 0 chr1 126565231 126565259 -70630173 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1550 437 200 188 97 chr1 126565267 126565411 -70630021 - B3 SINE B2 -33 162 6 1 1550 230 262 43 58 chr1 126565641 126565710 -70629722 - B1_Mus1 SINE Alu -80 68 1 1 1550 261 0 0 0 chr1 126566009 126566038 -70629394 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1550 243 288 0 14 chr1 126566103 126566177 -70629255 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1550 568 322 78 39 chr1 126566187 126566468 -70628964 - B4A SINE B4 0 292 1 1 1550 2814 195 84 7 chr1 126566667 126567251 -70628181 + RMER1B Other Other 435 1063 -3 1 1550 380 349 93 48 chr1 126567573 126567841 -70627591 + B4 SINE B4 2 281 -11 1 1550 234 355 47 24 chr1 126567911 126568081 -70627351 + MER63D DNA AcHobo 451 624 -437 1 1550 193 172 52 0 chr1 126568153 126568211 -70627221 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1 1550 513 340 77 15 chr1 126568226 126568498 -70626934 - B4A SINE B4 -2 290 2 1 1550 352 289 86 57 chr1 126568510 126568719 -70626713 + MER63D DNA AcHobo 818 1032 -29 1 1550 348 24 0 0 chr1 126568738 126568779 -70626653 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1550 21 0 0 0 chr1 126569213 126569234 -70626198 + AT_rich Low_complexity Low_complexity 1 21 0 1 1550 637 316 81 23 chr1 126569272 126569531 -70625901 + B4 SINE B4 6 279 -13 1 1550 379 206 185 68 chr1 126570440 126570586 -70624846 - RSINE1 SINE B4 0 165 3 1 1550 364 244 114 130 chr1 126571070 126571254 -70624178 + B3A SINE B2 3 183 -15 1 1550 731 252 0 21 chr1 126571271 126571413 -70624019 + B3A SINE B2 2 140 -58 1 1550 743 157 14 0 chr1 126571417 126571557 -70623875 + (CAGAGA)n Simple_repeat Simple_repeat 4 145 0 1 1550 191 128 51 0 chr1 126571597 126571636 -70623796 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1 1550 491 256 58 25 chr1 126571663 126571783 -70623649 - B1_Mur2 SINE Alu -21 128 5 1 1550 428 323 65 45 chr1 126571807 126572008 -70623424 - B3 SINE B2 0 216 12 1 1550 888 256 40 98 chr1 126572011 126572558 -70622874 - RLTR12B LTR ERVK -6 522 47 1 1550 574 330 59 56 chr1 126572774 126573060 -70622372 + B4 SINE B4 5 291 -1 1 1550 545 42 14 0 chr1 126573196 126573268 -70622164 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1 1550 513 0 0 0 chr1 126573271 126573328 -70622104 + (TAG)n Simple_repeat Simple_repeat 3 59 0 1 1550 256 398 0 44 chr1 126574096 126574209 -70621223 + ID_B1 SINE B4 11 118 -106 1 1550 366 328 32 25 chr1 126574207 126574423 -70621009 + MLT1E3 LTR MaLR 407 627 0 1 1550 192 200 0 0 chr1 126574801 126574841 -70620591 + GA-rich Low_complexity Low_complexity 2 41 0 1 1550 422 294 144 14 chr1 126574850 126575195 -70620237 - MTE2a LTR MaLR 0 379 3 1 1550 464 48 0 16 chr1 126575344 126575408 -70620024 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1550 202 214 0 0 chr1 126575701 126575743 -70619689 + T-rich Low_complexity Low_complexity 4 45 0 1 1550 224 241 0 0 chr1 126576505 126576559 -70618873 + A-rich Low_complexity Low_complexity 1 54 0 1 1550 889 310 68 41 chr1 126576670 126577076 -70618356 + MTEa LTR MaLR 1 379 0 1 1550 2712 19 0 0 chr1 126577123 126577448 -70617984 + L1Md_A LINE L1 5262 5586 -297 1 1550 8803 13 3 0 chr1 126577448 126578441 -70616991 + L1Md_A LINE L1 5587 6582 0 1 1550 1152 68 0 0 chr1 126578976 126579122 -70616310 - B1_Mus2 SINE Alu 0 147 2 1 1550 875 313 44 18 chr1 126579543 126579816 -70615616 + B4A SINE B4 2 281 -11 1 1550 293 246 0 104 chr1 126580903 126580980 -70614452 + B4A SINE B4 221 289 -3 1 1550 1205 120 22 0 chr1 126582184 126582368 -70613064 + B2_Mm2 SINE B2 1 188 -7 1 1550 383 301 0 51 chr1 126582424 126582522 -70612910 + B4A SINE B4 193 285 -7 1 1550 1085 79 0 7 chr1 126582612 126582765 -70612667 - L1_Mus3 LINE L1 -398 6240 6089 1 1550 2110 101 9 6 chr1 126582746 126583074 -70612358 + L1_Mus3 LINE L1 6232 6560 -78 1 1550 333 0 0 0 chr1 126583155 126583192 -70612240 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1550 1001 83 30 0 chr1 126583192 126583325 -70612107 - B1_Mm SINE Alu -9 138 2 1 1550 194 280 80 0 chr1 126583677 126583752 -70611680 - MIRc SINE MIR 0 268 188 1 1550 425 333 7 13 chr1 126584004 126584153 -70611279 + RSINE1 SINE B4 3 150 -15 1 1550 257 330 19 46 chr1 126584509 126584617 -70610815 + MLT1B LTR MaLR 261 365 -25 1 1550 225 108 0 0 chr1 126584618 126584655 -70610777 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1550 363 228 23 26 chr1 126585379 126585472 -70609960 + ID_B1 SINE B4 2 92 -200 1 1550 477 0 0 0 chr1 126585804 126585857 -70609575 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1550 335 376 8 0 chr1 126585876 126585993 -70609439 - RSINE1 SINE B4 -46 119 2 1 1550 616 301 73 25 chr1 126586013 126586217 -70609215 - B4 SINE B4 -78 214 1 1 1550 247 338 0 0 chr1 126586222 126586293 -70609139 + MIRb SINE MIR 198 268 0 1 1550 215 436 16 0 chr1 126586891 126587017 -70608415 - L3 LINE CR1 -105 4384 4257 1 1550 1420 274 48 30 chr1 126587170 126587542 -70607890 + MTE2a LTR MaLR 1 379 0 1 1550 1107 287 99 19 chr1 126588362 126588827 -70606605 + RMER5 LTR ERV1 33 534 0 1 1550 213 143 0 58 chr1 126588958 126589010 -70606422 + T-rich Low_complexity Low_complexity 2 50 0 1 1550 1483 221 12 30 chr1 126589617 126589948 -70605484 - Lx5 LINE L1 -3 7047 6723 1 1550 384 168 0 50 chr1 126590168 126590268 -70605164 - L1Md_F2 LINE L1 0 6582 6488 1 1550 393 82 0 0 chr1 126590596 126590657 -70604775 - L1_Mus2 LINE L1 -447 6119 6059 1 1550 1159 85 0 97 chr1 126590657 126590853 -70604579 + L1_Mus2 LINE L1 6390 6566 0 1 1550 635 140 7 0 chr1 126591071 126591214 -70604218 + (TC)n Simple_repeat Simple_repeat 2 145 0 1 1550 459 0 0 0 chr1 126591215 126591266 -70604166 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1550 311 352 36 36 chr1 126591360 126591528 -70603904 - B4A SINE B4 -115 177 10 1 1550 1625 227 39 33 chr1 126592367 126592731 -70602701 + MTEb LTR MaLR 1 366 -13 1 1550 516 264 101 0 chr1 126592928 126593057 -70602375 - B1_Mur2 SINE Alu -7 142 1 1 1550 1545 104 11 152 chr1 126593073 126593435 -70601997 - L1_Mus3 LINE L1 -1 6637 6327 1 1550 444 19 0 0 chr1 126593776 126593829 -70601603 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1550 276 338 73 0 chr1 126593849 126594000 -70601432 + Lx9 LINE L1 7257 7418 -226 1 1550 486 0 0 0 chr1 126594002 126594056 -70601376 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1550 315 351 38 15 chr1 126594197 126594330 -70601102 - MLT1D LTR MaLR -150 355 220 1 1550 223 26 77 0 chr1 126594444 126594483 -70600949 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1550 254 234 45 0 chr1 126595310 126595421 -70600011 + GA-rich Low_complexity Low_complexity 5 120 0 1 1550 1991 137 22 0 chr1 126595455 126595768 -70599664 + ORR1A2 LTR MaLR 8 327 0 1 1550 24 0 0 0 chr1 126596477 126596501 -70598931 + AT_rich Low_complexity Low_complexity 1 24 0 1 1550 224 199 17 5 chr1 126596727 126596877 -70598555 + (TGGA)n Simple_repeat Simple_repeat 1 151 0 1 1550 462 49 0 0 chr1 126596877 126596938 -70598494 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1550 224 315 22 11 chr1 126596938 126596969 -70598463 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 1 1550 783 310 30 0 chr1 126597564 126597786 -70597646 + B4 SINE B4 2 230 -62 1 1550 624 310 13 0 chr1 126597786 126597944 -70597488 + B3A SINE B2 1 160 -38 1 1550 796 194 56 0 chr1 126598380 126598524 -70596908 + B3A SINE B2 5 156 -42 1 1550 1101 30 0 0 chr1 126598525 126598658 -70596774 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1550 225 0 0 0 chr1 126598658 126598682 -70596750 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1550 341 323 82 94 chr1 126599696 126599867 -70595565 + B4A SINE B4 2 170 -122 2 1550 222 265 10 170 chr1 126599781 126599881 -70595551 + B1F2 SINE Alu 12 95 -54 2 1550 198 0 0 0 chr1 126599988 126600010 -70595422 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1550 230 347 0 13 chr1 126600500 126600576 -70594856 + B3A SINE B2 1 75 -123 2 1550 461 360 84 11 chr1 126601060 126601251 -70594181 + B4A SINE B4 70 274 -18 2 1550 372 390 56 60 chr1 126602298 126602582 -70592850 - B4A SINE B4 0 292 10 2 1550 267 203 0 0 chr1 126603255 126603314 -70592118 + CT-rich Low_complexity Low_complexity 1 59 0 2 1550 7976 97 62 2 chr1 126604259 126605512 -70589920 + Lx3_Mus LINE L1 5683 7009 0 2 1550 353 345 126 20 chr1 126605539 126605690 -70589742 - B3A SINE B2 -30 168 2 2 1550 1745 229 19 44 chr1 126606566 126606996 -70588436 - MTD LTR MaLR 0 419 1 2 1550 444 321 179 19 chr1 126607091 126607348 -70588084 + RMER15 LTR ERVL 251 548 -27 2 1550 780 236 15 30 chr1 126607879 126608076 -70587356 + Lx4B LINE L1 6848 7041 -17 2 1550 626 298 53 108 chr1 126608757 126609156 -70586276 - MTE2a LTR MaLR -2 377 1 2 1550 278 331 37 37 chr1 126609200 126609295 -70586137 + L2a LINE L2 2649 2742 -677 2 1550 3312 38 5 0 chr1 126609295 126609689 -70585743 - MTA_Mm LTR MaLR 0 396 1 2 1550 278 331 37 37 chr1 126609689 126609728 -70585704 + L2a LINE L2 2743 2783 -636 2 1550 256 343 64 7 chr1 126610228 126610369 -70585063 + L2a LINE L2 3263 3411 -15 2 1550 706 301 28 0 chr1 126610946 126611025 -70584407 + ID SINE ID 2 85 -139 2 1550 248 315 117 55 chr1 126611025 126611162 -70584270 + PB1D10 SINE Alu 1 149 0 2 1550 611 340 31 16 chr1 126611440 126611634 -70583798 - B3A SINE B2 -1 197 1 2 1550 892 265 61 4 chr1 126611634 126611852 -70583580 - B4A SINE B4 -60 232 2 2 1550 194 33 67 0 chr1 126611932 126611962 -70583470 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 1550 964 55 0 0 chr1 126612052 126612180 -70583252 - L1Md_T LINE L1 -12 6570 6443 2 1550 218 196 78 0 chr1 126613106 126613157 -70582275 - MIRm SINE MIR 0 276 222 2 1550 777 291 36 14 chr1 126613255 126613478 -70581954 + B4 SINE B4 1 228 -64 2 1550 431 231 213 20 chr1 126613485 126613635 -70581797 + B3A SINE B2 4 182 -16 2 1550 489 327 38 28 chr1 126614178 126614467 -70580965 - B4A SINE B4 0 292 1 2 193 261 284 76 25 chr1 126615547 126615666 -70579766 - L2c LINE L2 -28 3359 3235 2 1551 549 290 14 14 chr1 126615883 126616030 -70579402 + RSINE1 SINE B4 13 159 -6 2 1551 203 133 44 0 chr1 126616051 126616096 -70579336 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1551 281 272 102 5 chr1 126616130 126616255 -70579177 + MIR SINE MIR 62 192 -70 2 1551 308 45 0 43 chr1 126616266 126616313 -70579119 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 2 1551 247 209 45 0 chr1 126616313 126616380 -70579052 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1551 202 152 0 0 chr1 126616679 126616712 -70578720 - MIRb SINE MIR -71 197 165 2 1551 306 329 89 20 chr1 126617535 126617681 -70577751 + RSINE1 SINE B4 2 157 -8 2 1551 479 277 30 15 chr1 126617752 126617884 -70577548 + MTEa LTR MaLR 1 134 -245 2 1551 1824 184 67 6 chr1 126617892 126618248 -70577184 + ORR1C1 LTR MaLR 1 378 0 2 1551 269 189 11 0 chr1 126618555 126618645 -70576787 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 1551 367 327 0 0 chr1 126618646 126618753 -70576679 + A-rich Low_complexity Low_complexity 4 110 0 2 1551 317 251 56 122 chr1 126619006 126619219 -70576213 - MER33 DNA MER1_type -89 235 37 2 1551 444 126 0 0 chr1 126619373 126619460 -70575972 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1551 411 160 0 0 chr1 126619459 126619553 -70575879 + (TG)n Simple_repeat Simple_repeat 1 94 0 2 1551 1696 71 12 4 chr1 126619618 126619858 -70575574 + L1_Mus3 LINE L1 6392 6633 -5 2 1551 257 330 19 19 chr1 126620182 126620287 -70575145 + RMER15 LTR ERVL 459 563 -12 2 1551 262 138 0 122 chr1 126621531 126621605 -70573827 - Lx8 LINE L1 -16 7457 7393 2 1551 1086 231 201 101 chr1 126621605 126622023 -70573409 + MT2A LTR ERVL 1 460 -73 2 1551 280 94 38 0 chr1 126622023 126622076 -70573356 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1551 520 345 97 42 chr1 126622511 126622820 -70572612 + MER21B LTR ERV1 312 637 -226 2 1551 189 325 83 0 chr1 126622878 126622998 -70572434 - L2 LINE L2 -547 2872 2743 2 1551 261 57 0 0 chr1 126623112 126623147 -70572285 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1551 612 0 0 0 chr1 126623147 126623214 -70572218 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1551 439 300 50 7 chr1 126623215 126623356 -70572076 - RSINE1 SINE B4 -17 148 2 2 1551 421 259 77 88 chr1 126624460 126624642 -70570790 + B3A SINE B2 3 182 -16 2 1551 1398 245 136 16 chr1 126624864 126625233 -70570199 - MTD LTR MaLR 0 419 7 2 1551 2392 105 8 16 chr1 126625483 126625871 -70569561 - L1_Mus3 LINE L1 -560 6078 5694 2 1551 4086 75 4 2 chr1 126625871 126626407 -70569025 + L1_Mus3 LINE L1 6095 6631 -7 2 1551 1002 266 9 14 chr1 126626413 126626630 -70568802 - B3 SINE B2 0 216 1 2 1551 389 300 0 0 chr1 126626646 126626746 -70568686 - RMER15 LTR ERVL -105 470 371 2 1551 358 275 120 87 chr1 126627432 126627494 -70567938 + B4A SINE B4 1 71 -221 2 1551 451 0 34 0 chr1 126627494 126627553 -70567879 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1551 358 275 120 87 chr1 126627553 126627587 -70567845 + B4A SINE B4 72 105 -187 2 1551 903 0 77 12 chr1 126627587 126627756 -70567676 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1551 358 275 120 87 chr1 126627756 126627933 -70567499 + B4A SINE B4 106 284 -8 2 1551 194 150 25 0 chr1 126628032 126628072 -70567360 + CT-rich Low_complexity Low_complexity 2 42 0 2 1551 590 231 52 26 chr1 126629135 126629326 -70566106 + B3A SINE B2 3 198 0 2 1551 282 56 0 0 chr1 126629715 126629751 -70565681 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1551 234 0 0 0 chr1 126629751 126629776 -70565656 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1551 2286 71 29 10 chr1 126629855 126630168 -70565264 + L1_Mus1 LINE L1 6243 6561 -6 2 1551 537 124 0 0 chr1 126630285 126630382 -70565050 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1551 310 134 15 15 chr1 126630958 126631026 -70564406 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1551 496 290 92 12 chr1 126631043 126631207 -70564225 - B3 SINE B2 -39 177 1 2 1551 432 0 0 0 chr1 126631660 126631708 -70563724 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1551 314 291 51 0 chr1 126631760 126631839 -70563593 - B3A SINE B2 -114 84 2 2 1551 385 284 74 7 chr1 126632713 126632848 -70562584 - RMER15 LTR ERVL 0 575 432 2 1551 21 71 0 0 chr1 126634227 126634269 -70561163 + AT_rich Low_complexity Low_complexity 1 42 0 2 1551 1692 85 0 0 chr1 126634269 126634493 -70560939 - L1_Mus1 LINE L1 -2 6565 6342 2 1551 2191 59 0 0 chr1 126634493 126634780 -70560652 + L1_Mus1 LINE L1 6037 6323 -244 2 1551 189 273 0 0 chr1 126635447 126635491 -70559941 + MIRm SINE MIR 219 262 -14 2 1551 610 252 0 0 chr1 126635914 126636041 -70559391 + B3A SINE B2 2 128 -70 2 1551 35 0 0 0 chr1 126636066 126636101 -70559331 + AT_rich Low_complexity Low_complexity 1 35 0 2 1551 487 278 34 62 chr1 126636307 126636516 -70558916 + MIRc SINE MIR 42 237 -31 2 1551 1315 244 54 24 chr1 126637514 126637850 -70557582 + ORR1E LTR MaLR 4 349 -10 2 1551 23 78 0 0 chr1 126638693 126638744 -70556688 + AT_rich Low_complexity Low_complexity 1 51 0 2 1551 682 288 79 47 chr1 126638807 126639084 -70556348 + B4A SINE B4 1 286 -6 2 1551 1128 15 0 0 chr1 126639108 126639238 -70556194 + (TC)n Simple_repeat Simple_repeat 2 131 0 2 1551 303 250 48 0 chr1 126639394 126639498 -70555934 + HAL1 LINE L1 110 218 -2289 2 1551 655 204 9 0 chr1 126639521 126639652 -70555780 + B1_Mur3 SINE Alu 16 148 -1 2 1551 607 315 125 19 chr1 126639931 126640392 -70555040 - MLT2B2 LTR ERVL -9 506 1 2 1551 354 336 49 25 chr1 126641565 126641687 -70553745 - B3 SINE B2 -53 163 39 2 1551 365 316 68 49 chr1 126641815 126641978 -70553454 + ID_B1 SINE B4 4 169 -55 2 1551 349 329 0 0 chr1 126642178 126642260 -70553172 + B3A SINE B2 52 133 -65 2 1551 450 0 0 0 chr1 126642260 126642310 -70553122 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1551 271 331 186 0 chr1 126642424 126642596 -70552836 - L2 LINE L2 -428 2991 2788 2 1551 437 235 26 17 chr1 126642596 126642713 -70552719 + B3A SINE B2 6 123 -75 2 1551 559 311 33 0 chr1 126643063 126643214 -70552218 + MTEa LTR MaLR 1 156 -223 2 1551 462 318 52 18 chr1 126643214 126643382 -70552050 + MT2A LTR ERVL 1 369 -164 2 1551 790 252 75 79 chr1 126643587 126643662 -70551770 + B4A SINE B4 4 80 -212 2 1551 2218 170 39 5 chr1 126643662 126644069 -70551363 + MTC LTR MaLR 1 421 0 2 1551 790 252 75 79 chr1 126644069 126644221 -70551211 + B4A SINE B4 81 230 -62 2 1551 780 278 71 97 chr1 126644372 126644631 -70550801 + Lx8 LINE L1 6991 7228 -245 2 1551 721 261 58 5 chr1 126644631 126644820 -70550612 - B3 SINE B2 -17 199 1 2 1551 780 278 71 97 chr1 126644820 126644857 -70550575 + Lx8 LINE L1 7229 7254 -219 2 1551 204 40 0 0 chr1 126644857 126644882 -70550550 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1551 780 278 71 97 chr1 126644882 126645033 -70550399 + Lx8 LINE L1 7255 7422 -51 2 1551 630 39 0 0 chr1 126645033 126645110 -70550322 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1551 780 278 71 97 chr1 126645110 126645154 -70550278 + Lx8 LINE L1 7423 7471 -2 2 1551 293 200 54 54 chr1 126645170 126645244 -70550188 + B4A SINE B4 219 292 0 2 1551 827 206 0 0 chr1 126647385 126647526 -70547906 - ID_B1 SINE B4 0 224 84 2 1551 663 287 103 38 chr1 126648195 126648593 -70546839 - Lx8 LINE L1 -2 7471 7048 2 1551 227 315 17 85 chr1 126648597 126648715 -70546717 - B4A SINE B4 -182 110 1 2 1551 185 362 19 87 chr1 126649245 126649348 -70546084 + L4 LINE RTE 1122 1217 -812 2 1551 431 270 35 75 chr1 126649445 126649481 -70545951 + B3A SINE B2 2 38 -160 3 1551 550 153 174 25 chr1 126649481 126649602 -70545830 + B1_Mur4 SINE Alu 1 139 -11 3 1551 246 62 0 0 chr1 126649604 126649636 -70545796 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1551 431 270 35 75 chr1 126649636 126649796 -70545636 + B3A SINE B2 39 193 -5 3 1551 842 293 27 91 chr1 126649818 126650115 -70545317 + B4 SINE B4 2 279 -13 3 1551 530 15 15 0 chr1 126650121 126650188 -70545244 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1551 575 374 86 44 chr1 126650584 126651015 -70544417 + LTR16A1 LTR ERVL 8 456 0 3 1551 240 35 0 0 chr1 126651349 126651378 -70544054 + (GGA)n Simple_repeat Simple_repeat 1 29 0 3 1551 420 288 71 8 chr1 126651565 126651691 -70543741 - B4A SINE B4 -158 134 1 3 1551 21 57 0 0 chr1 126652050 126652085 -70543347 + AT_rich Low_complexity Low_complexity 1 35 0 3 1551 234 0 0 0 chr1 126652632 126652658 -70542774 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 3 1551 648 115 0 0 chr1 126652711 126652824 -70542608 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1551 492 288 74 56 chr1 126652832 126652994 -70542438 - B3A SINE B2 -33 165 1 3 1551 806 274 34 15 chr1 126653372 126653576 -70541856 + B4 SINE B4 3 210 -82 3 1551 516 285 92 19 chr1 126653573 126653745 -70541687 + B3 SINE B2 5 187 -8 3 1551 276 300 79 10 chr1 126654195 126654285 -70541147 - MER5A1 DNA MER1_type -22 144 48 3 1551 2310 235 19 10 chr1 126654285 126654804 -70540628 - RLTR11A2 LTR ERVK -1 526 3 3 1551 251 315 124 0 chr1 126654989 126655078 -70540354 + ID_B1 SINE B4 124 223 -1 3 1551 203 175 25 0 chr1 126655078 126655118 -70540314 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 1551 1310 246 122 11 chr1 126655175 126655545 -70539887 + MTD LTR MaLR 6 416 -3 3 1551 320 281 0 27 chr1 126656197 126656467 -70538965 + GA-rich Low_complexity Low_complexity 1 262 0 3 1551 24 0 0 0 chr1 126657000 126657024 -70538408 + AT_rich Low_complexity Low_complexity 1 24 0 3 1551 864 29 0 0 chr1 126657739 126657842 -70537590 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 1551 459 341 39 8 chr1 126657846 126657976 -70537456 - RSINE1 SINE B4 -30 135 2 3 1551 5021 137 13 7 chr1 126658006 126658780 -70536652 - Lx2 LINE L1 0 6997 6219 3 1551 431 353 93 0 chr1 126659238 126659388 -70536044 - B4 SINE B4 -2 290 127 3 1551 637 264 14 0 chr1 126659439 126659579 -70535853 - B3A SINE B2 -48 150 9 3 1551 358 176 0 23 chr1 126660031 126660118 -70535314 + CT-rich Low_complexity Low_complexity 3 87 0 3 1551 589 289 18 62 chr1 126661003 126661228 -70534204 + MT2A LTR ERVL 153 367 -166 3 1551 496 127 27 18 chr1 126661296 126661408 -70534024 + (CATA)n Simple_repeat Simple_repeat 3 115 0 3 1551 405 0 0 0 chr1 126661489 126661534 -70533898 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1551 927 260 67 71 chr1 126661942 126662120 -70533312 + B4 SINE B4 41 229 -63 3 1551 230 0 0 32 chr1 126662120 126662151 -70533281 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 1551 927 260 67 71 chr1 126662151 126662225 -70533207 + B4 SINE B4 230 292 0 3 1551 527 263 81 15 chr1 126662868 126663065 -70532367 + B3 SINE B2 2 211 -5 3 1551 599 299 84 23 chr1 126663622 126663961 -70531471 + Lx2A LINE L1 5504 5872 -1136 3 1551 1002 113 0 0 chr1 126663972 126664123 -70531309 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 3 1551 3833 78 18 6 chr1 126664130 126664645 -70530787 - L1Md_F2 LINE L1 0 6582 6062 3 1551 5924 58 0 18 chr1 126664892 126665652 -70529780 - L1Md_F2 LINE L1 -11 6571 5826 3 1551 910 225 20 20 chr1 126665840 126666035 -70529397 + MTD LTR MaLR 168 362 -57 3 1551 432 82 0 0 chr1 126666042 126666103 -70529329 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1551 1379 252 70 21 chr1 126666444 126666798 -70528634 + Lx9 LINE L1 7132 7488 -156 3 1551 243 0 0 0 chr1 126666798 126666825 -70528607 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1551 1379 252 70 21 chr1 126666825 126666953 -70528479 + Lx9 LINE L1 7489 7638 -6 3 1551 631 307 39 47 chr1 126667222 126667584 -70527848 + L1M2 LINE L1 5254 5612 -685 3 1551 329 289 82 82 chr1 126667913 126668060 -70527372 - B4A SINE B4 -145 147 1 3 1551 269 116 0 72 chr1 126668097 126668159 -70527273 - L1M5 LINE L1 -551 5893 5839 3 1551 487 256 112 28 chr1 126668127 126668376 -70527056 - L1MA8 LINE L1 -421 5870 5601 3 1551 525 32 0 0 chr1 126668405 126668468 -70526964 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1551 922 258 35 0 chr1 126668494 126668692 -70526740 - B4 SINE B4 -6 286 82 3 1551 1653 268 14 19 chr1 126668706 126669135 -70526297 - Lx5 LINE L1 -9 7041 6615 3 1551 2745 166 108 50 chr1 126669135 126669681 -70525751 + RMER19A LTR ERVK 1 578 -159 3 1551 1377 45 6 0 chr1 126669692 126669871 -70525561 + L1Md_F3 LINE L1 6391 6570 -14 3 1551 1528 222 3 9 chr1 126669891 126670228 -70525204 - Lx5 LINE L1 -431 6619 6285 3 1551 1175 217 39 28 chr1 126670230 126670638 -70524794 + Lx5 LINE L1 5816 6243 -1217 3 1551 244 349 31 0 chr1 126670739 126670868 -70524564 - L1MA8 LINE L1 -688 5603 5471 3 1551 246 32 0 0 chr1 126671017 126671048 -70524384 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1551 484 318 62 43 chr1 126671470 126671954 -70523478 + L1ME1 LINE L1 5673 6165 -14 3 1551 848 301 145 19 chr1 126672356 126672728 -70522704 - MTD LTR MaLR 0 419 1 3 1551 538 287 141 50 chr1 126673281 126673622 -70521810 + Lx8 LINE L1 6868 7239 -234 3 1551 244 294 0 29 chr1 126673662 126673732 -70521700 + PB1D10 SINE Alu 1 68 -49 3 1551 519 335 38 17 chr1 126673671 126673884 -70521548 + B4A SINE B4 92 292 0 3 1551 1243 273 73 9 chr1 126674640 126674980 -70520452 + MTEa LTR MaLR 18 379 0 3 1551 291 203 0 0 chr1 126675854 126675923 -70519509 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 3 1551 609 323 10 45 chr1 126676008 126676206 -70519226 - B3A SINE B2 0 198 8 3 1551 26 0 0 0 chr1 126676309 126676335 -70519097 + AT_rich Low_complexity Low_complexity 1 26 0 3 1551 315 96 0 0 chr1 126676335 126676387 -70519045 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1551 422 347 69 0 chr1 126676392 126676536 -70518896 - B3A SINE B2 -36 162 9 3 1551 1466 178 4 21 chr1 126676578 126676859 -70518573 - L1VL4 LINE L1 -5830 472 197 3 1551 12166 147 13 4 chr1 126676975 126679926 -70515506 + Lx2 LINE L1 3616 6595 -402 3 1551 939 173 47 26 chr1 126679926 126680116 -70515316 + Lx2 LINE L1 6790 6983 -14 3 1551 1542 11 0 0 chr1 126680130 126680306 -70515126 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 3 1551 1984 110 7 7 chr1 126680636 126680929 -70514503 + ORR1A2 LTR MaLR 27 319 -8 3 1551 992 32 31 35 chr1 126681226 126681451 -70513981 + (TC)n Simple_repeat Simple_repeat 1 224 0 3 1551 438 53 0 0 chr1 126682544 126682601 -70512831 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1551 559 336 21 45 chr1 126682636 126682926 -70512506 - B4A SINE B4 -8 284 2 3 1551 402 289 20 40 chr1 126683106 126683254 -70512178 + RSINE1 SINE B4 4 148 -17 3 1551 26 0 0 0 chr1 126683268 126683294 -70512138 + AT_rich Low_complexity Low_complexity 1 26 0 3 1551 31 0 0 0 chr1 126683455 126683486 -70511946 + AT_rich Low_complexity Low_complexity 1 31 0 3 1551 657 0 0 0 chr1 126683796 126683869 -70511563 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 3 1551 1115 139 5 10 chr1 126683871 126684067 -70511365 - Lx LINE L1 -16 6638 6444 3 1551 252 326 0 0 chr1 126684916 126685014 -70510418 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1551 449 329 0 0 chr1 126685038 126685196 -70510236 + (TATATG)n Simple_repeat Simple_repeat 5 162 0 3 1551 1077 298 3 17 chr1 126685197 126685484 -70509948 - B4 SINE B4 -1 291 9 3 1551 774 32 0 0 chr1 126686016 126686109 -70509323 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 1551 490 346 16 22 chr1 126686230 126686413 -70509019 + B3A SINE B2 1 182 -16 3 1551 582 63 0 0 chr1 126687753 126687832 -70507600 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1551 548 53 13 0 chr1 126687878 126687954 -70507478 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1551 561 301 80 102 chr1 126687955 126688229 -70507203 - B4 SINE B4 -23 269 2 3 1551 332 254 77 55 chr1 126688917 126689100 -70506332 + MER57A-int LTR ERV1 5798 5984 -203 3 1551 37 76 0 0 chr1 126689100 126689179 -70506253 + AT_rich Low_complexity Low_complexity 1 79 0 3 1551 4404 115 15 90 chr1 126689829 126690641 -70504791 - RMER17A LTR ERVK 0 751 1 3 1551 338 301 9 88 chr1 126691031 126691043 -70504389 - PB1D10 SINE Alu -5 112 9 3 1551 466 317 0 0 chr1 126691043 126691144 -70504288 - ID_B1 SINE B4 -34 190 90 3 1551 1208 298 33 19 chr1 126691611 126691974 -70503458 - MTEb LTR MaLR -9 370 3 3 1551 717 264 5 48 chr1 126692043 126692250 -70503182 + B3A SINE B2 1 198 0 3 1551 882 245 123 47 chr1 126693706 126694048 -70501384 + ORR1D2 LTR MaLR 2 369 -1 3 1551 186 43 0 0 chr1 126694126 126694149 -70501283 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1551 869 34 0 57 chr1 126694164 126694288 -70501144 - B1_Mus1 SINE Alu -1 147 31 3 1551 213 150 32 32 chr1 126694294 126694356 -70501076 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 3 1551 321 328 89 190 chr1 126695230 126695546 -70499886 + B4A SINE B4 4 287 -5 3 1551 446 314 37 38 chr1 126696239 126696708 -70498724 + L1_Mur1 LINE L1 1440 1910 -3976 3 1551 785 298 38 89 chr1 126696722 126697094 -70498338 - MTE2a LTR MaLR -8 371 19 3 1551 191 61 0 29 chr1 126698053 126698087 -70497345 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1551 228 100 0 0 chr1 126698394 126698434 -70496998 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1551 217 202 62 12 chr1 126698458 126698538 -70496894 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 3 1551 237 139 0 0 chr1 126698538 126698581 -70496851 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1551 564 206 227 6 chr1 126698765 126698941 -70496491 - B3 SINE B2 0 216 2 3 1551 440 103 44 0 chr1 126699782 126699850 -70495582 + B2_Mm2 SINE B2 116 186 -9 4 1551 615 286 25 59 chr1 126699994 126700198 -70495234 - B3A SINE B2 -1 197 1 4 1551 408 82 0 0 chr1 126700307 126700368 -70495064 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 1551 2484 302 42 5 chr1 126700520 126701385 -70494047 - Lx8 LINE L1 -369 7104 6208 4 1551 396 82 0 0 chr1 126702613 126702674 -70492758 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1551 390 204 0 0 chr1 126702673 126702761 -70492671 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1551 708 304 28 42 chr1 126702773 126703058 -70492374 - B4A SINE B4 -8 284 4 4 1551 1201 272 56 22 chr1 126703302 126703659 -70491773 + MTE2a LTR MaLR 6 374 -5 4 1551 222 321 0 0 chr1 126703724 126703805 -70491627 + (ATGGTG)n Simple_repeat Simple_repeat 6 86 0 4 1551 766 301 0 59 chr1 126703884 126704071 -70491361 - B3A SINE B2 -22 176 1 4 1551 631 312 65 54 chr1 126704182 126704460 -70490972 + B4 SINE B4 1 281 -11 4 1551 5565 103 6 5 chr1 126704548 126705370 -70490062 + RLTR22_Mus LTR ERVK 1 823 -985 4 1551 413 325 45 54 chr1 126705585 126705809 -70489623 + RMER12 LTR ERVK 1101 1322 0 4 1551 572 281 177 55 chr1 126706233 126706408 -70489024 + B4 SINE B4 5 215 -77 4 1551 320 0 0 24 chr1 126706408 126706449 -70488983 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1551 572 281 177 55 chr1 126706449 126706510 -70488922 + B4 SINE B4 216 270 -22 4 1551 381 284 19 43 chr1 126707000 126707162 -70488270 + RSINE1 SINE B4 2 159 -6 4 1551 549 0 0 0 chr1 126707165 126707226 -70488206 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1551 4085 190 63 17 chr1 126707624 126708589 -70486843 - RLTR25A LTR ERVK 0 1028 3 4 1551 22 0 0 0 chr1 126708589 126708611 -70486821 + AT_rich Low_complexity Low_complexity 1 22 0 4 1551 338 0 24 0 chr1 126708611 126708653 -70486779 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1551 871 125 88 0 chr1 126708734 126708870 -70486562 + B1_Mus1 SINE Alu 1 148 0 4 1551 210 91 0 0 chr1 126708922 126708955 -70486477 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1551 558 29 0 0 chr1 126708955 126709022 -70486410 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1551 368 291 19 19 chr1 126709139 126709244 -70486188 - PB1 SINE Alu -3 124 20 4 1551 232 154 0 0 chr1 126709436 126709475 -70485957 + B2_Mm2 SINE B2 1 39 -156 4 1551 312 331 25 86 chr1 126709445 126709607 -70485825 + B3A SINE B2 47 198 0 4 1551 887 297 50 11 chr1 126710204 126710466 -70484966 + B4 SINE B4 18 289 -3 4 1551 784 324 43 56 chr1 126710914 126711379 -70484053 + Tigger16a DNA Tigger 469 927 -6 4 1551 313 232 87 16 chr1 126711874 126712001 -70483431 + L1MC4a LINE L1 6617 6752 -1130 4 1551 316 235 35 0 chr1 126712072 126712157 -70483275 + Lx8 LINE L1 7263 7350 -123 4 1551 477 0 0 0 chr1 126712521 126712574 -70482858 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 4 1551 234 309 18 9 chr1 126712651 126712762 -70482670 + L1MC4a LINE L1 6887 6998 -787 4 1551 300 249 256 17 chr1 126712908 126713084 -70482348 + L1MC4a LINE L1 7397 7614 -381 4 1551 463 303 33 7 chr1 126713098 126713251 -70482181 + RSINE1 SINE B4 3 159 -6 4 1551 261 340 57 51 chr1 126713331 126713681 -70481751 + L1MC3 LINE L1 7408 7759 -26 4 1551 645 305 23 14 chr1 126713859 126714075 -70481357 - ID_B1 SINE B4 -6 218 1 4 1551 239 298 55 28 chr1 126714240 126714369 -70481063 - MIR SINE MIR -68 200 65 4 1551 2622 116 23 2 chr1 126714384 126714783 -70480649 + Lx3_Mus LINE L1 6603 7009 0 4 1551 448 293 106 35 chr1 126714908 126715078 -70480354 - B3A SINE B2 -16 182 1 4 1551 1342 283 40 32 chr1 126715260 126715632 -70479800 - MTE2b LTR MaLR 0 379 5 4 1551 727 279 43 5 chr1 126716447 126716656 -70478776 + ID_B1 SINE B4 1 217 -7 4 1551 385 302 36 7 chr1 126716964 126717020 -70478412 + Lx8 LINE L1 7179 7238 -235 4 1551 342 0 0 0 chr1 126717020 126717058 -70478374 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1551 385 302 36 7 chr1 126717058 126717141 -70478291 + Lx8 LINE L1 7239 7321 -152 4 1551 618 14 0 0 chr1 126717156 126717227 -70478205 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1551 6052 124 23 10 chr1 126717300 126718274 -70477158 + Lx3A LINE L1 5984 6969 -12 4 1551 330 202 54 27 chr1 126718291 126718403 -70477029 + Lx8 LINE L1 7355 7469 -4 4 1551 289 340 106 7 chr1 126718645 126718787 -70476645 - B4A SINE B4 0 292 137 4 1551 829 277 28 0 chr1 126718896 126719109 -70476323 - ID_B1 SINE B4 -1 223 5 4 1551 730 279 6 6 chr1 126719441 126719600 -70475832 + B3A SINE B2 2 160 -38 4 1551 225 159 0 0 chr1 126719600 126719644 -70475788 + (CATG)n Simple_repeat Simple_repeat 1 44 0 4 1551 427 302 51 82 chr1 126719644 126719679 -70475753 + B2_Mm2 SINE B2 155 190 -5 4 1551 221 315 94 88 chr1 126719764 126719945 -70475487 - B2_Mm1t SINE B2 -9 184 3 4 1551 526 365 13 7 chr1 126719799 126719948 -70475484 - RSINE1 SINE B4 -15 150 1 4 1551 457 211 8 102 chr1 126720547 126720674 -70474758 + B4 SINE B4 26 140 -152 4 1551 297 275 12 0 chr1 126720981 126721061 -70474371 - ID_B1 SINE B4 -8 216 136 4 1551 676 258 77 6 chr1 126721349 126721505 -70473927 + B3A SINE B2 2 168 -30 4 1551 234 116 0 0 chr1 126721512 126721555 -70473877 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1551 229 317 131 45 chr1 126721653 126721690 -70473742 - B3 SINE B2 0 216 2 4 1551 617 299 37 25 chr1 126721690 126721851 -70473581 - RSINE1 SINE B4 0 165 3 4 1551 22 0 0 0 chr1 126722062 126722084 -70473348 + AT_rich Low_complexity Low_complexity 1 22 0 4 1551 465 307 26 0 chr1 126722172 126722286 -70473146 - RSINE1 SINE B4 -44 121 5 4 1551 341 322 57 28 chr1 126722296 126722472 -70472960 - MIRb SINE MIR -52 216 36 4 1551 572 345 17 35 chr1 126723581 126723812 -70471620 + B4 SINE B4 1 227 -65 4 1551 4111 105 5 8 chr1 126724215 126724812 -70470620 - L1_Mus4 LINE L1 0 6636 6042 4 1551 4338 112 3 1 chr1 126724812 126725690 -70469742 + L1_Mus4 LINE L1 5165 6044 -592 4 1551 760 203 209 0 chr1 126725800 126725987 -70469445 + URR1A DNA MER1_type 1 226 0 4 1551 255 261 24 73 chr1 126726215 126726339 -70469093 - Lx8 LINE L1 0 7473 7356 4 1551 578 335 6 22 chr1 126726472 126726655 -70468777 - ID_B1 SINE B4 -8 216 37 4 1551 584 305 68 34 chr1 126726736 126726970 -70468462 + MTE2a LTR MaLR 129 370 -9 4 1551 651 298 18 0 chr1 126728386 126728554 -70466878 + ID_B1 SINE B4 44 214 -10 4 1551 873 81 0 0 chr1 126728555 126728678 -70466754 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 4 1551 496 292 142 67 chr1 126729454 126729722 -70465710 + B4A SINE B4 5 292 0 4 1551 468 51 0 0 chr1 126729904 126729963 -70465469 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1551 363 44 0 0 chr1 126729963 126730008 -70465424 + (TTG)n Simple_repeat Simple_repeat 3 47 0 4 1551 300 303 135 111 chr1 126730070 126730278 -70465154 - B4A SINE B4 -78 214 2 4 1551 333 68 0 0 chr1 126731320 126731364 -70464068 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1551 381 188 0 0 chr1 126731376 126731456 -70463976 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 4 1551 763 285 51 18 chr1 126732414 126732689 -70462743 + Lx8 LINE L1 7189 7472 -1 4 1551 769 268 34 0 chr1 126732768 126732977 -70462455 + B3 SINE B2 1 216 0 4 1551 529 266 102 0 chr1 126733733 126733861 -70461571 + B3A SINE B2 3 143 -55 4 1551 192 77 0 0 chr1 126733912 126733938 -70461494 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 4 1551 333 286 17 1 chr1 126734188 126734331 -70461101 + L1MA4 LINE L1 5804 5948 -349 4 1551 218 136 23 0 chr1 126734369 126734413 -70461019 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1551 528 195 0 35 chr1 126734583 126734753 -70460679 + (TATG)n Simple_repeat Simple_repeat 4 167 0 4 1551 887 243 28 5 chr1 126735536 126735747 -70459685 - B3 SINE B2 0 216 1 4 1551 516 16 0 0 chr1 126735982 126736043 -70459389 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1551 334 344 18 55 chr1 126737107 126737270 -70458162 + RSINE1 SINE B4 2 158 -7 4 1551 216 0 0 0 chr1 126737275 126737299 -70458133 + (TAA)n Simple_repeat Simple_repeat 3 26 0 4 1551 302 0 26 0 chr1 126737299 126737337 -70458095 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1551 231 36 0 0 chr1 126737742 126737770 -70457662 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1551 562 313 67 0 chr1 126737785 126737919 -70457513 - RSINE1 SINE B4 -16 149 7 4 1551 375 344 44 30 chr1 126738165 126738300 -70457132 + RSINE1 SINE B4 2 138 -27 4 1551 474 18 0 0 chr1 126738309 126738364 -70457068 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1551 456 296 133 36 chr1 126738445 126738641 -70456791 + B3 SINE B2 2 216 0 4 1551 775 237 28 11 chr1 126739212 126739391 -70456041 + B3A SINE B2 1 182 -16 4 1551 285 109 0 0 chr1 126742444 126742490 -70452942 + (CTG)n Simple_repeat Simple_repeat 1 46 0 4 1551 24 67 0 0 chr1 126742854 126742899 -70452533 + AT_rich Low_complexity Low_complexity 1 45 0 4 1551 187 269 58 0 chr1 126743347 126743399 -70452033 + L3 LINE CR1 2183 2237 -2252 4 1551 528 323 6 6 chr1 126743445 126743607 -70451825 - RSINE1 SINE B4 0 165 4 4 1551 324 103 0 0 chr1 126743909 126743967 -70451465 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 4 1551 985 242 5 23 chr1 126743967 126744187 -70451245 + B3 SINE B2 1 216 0 4 1551 2059 219 15 10 chr1 126744551 126744952 -70450480 - MTC LTR MaLR -18 403 1 4 1551 872 275 35 0 chr1 126744952 126745149 -70450283 - B4 SINE B4 -84 208 5 4 1551 301 299 94 53 chr1 126745252 126745517 -70449915 + L1MC LINE L1 2910 3185 -2961 4 1551 297 291 85 32 chr1 126745997 126746185 -70449247 - RLTR42-int LTR ERVK -4132 1390 1193 5 193 743 279 108 81 chr1 126746459 126746794 -70448638 + MTD LTR MaLR 76 419 0 5 1552 237 330 47 88 chr1 126746980 126747092 -70448340 + B3A SINE B2 11 119 -79 5 1552 396 0 0 0 chr1 126747092 126747136 -70448296 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1552 729 234 11 80 chr1 126747136 126747189 -70448243 + RSINE1 SINE B4 125 165 0 5 1552 237 330 47 88 chr1 126747189 126747216 -70448216 + B3A SINE B2 120 195 -3 5 1552 588 276 97 0 chr1 126747626 126747811 -70447621 + B3 SINE B2 1 203 -13 5 1552 406 260 118 39 chr1 126748029 126748233 -70447199 + ID_B1 SINE B4 1 220 -4 5 1552 1004 262 51 22 chr1 126748464 126748737 -70446695 + B4A SINE B4 2 282 -10 5 1552 495 0 0 0 chr1 126749150 126749205 -70446227 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1552 185 234 45 45 chr1 126750878 126750945 -70444487 + L3 LINE CR1 961 1027 -3462 5 1552 915 46 0 22 chr1 126750985 126750996 -70444436 + (TTC)n Simple_repeat Simple_repeat 2 11 0 5 1552 1283 69 0 6 chr1 126750996 126751172 -70444260 + (TTCTC)n Simple_repeat Simple_repeat 3 177 0 5 1552 915 46 0 22 chr1 126751172 126751294 -70444138 + (TTC)n Simple_repeat Simple_repeat 2 121 0 5 1552 783 32 0 0 chr1 126751296 126751390 -70444042 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1552 639 342 61 18 chr1 126751832 126752109 -70443323 + B4A SINE B4 4 292 0 5 1552 408 235 25 0 chr1 126752392 126752473 -70442959 + ID SINE ID 1 83 -141 5 1552 614 198 18 0 chr1 126752970 126753081 -70442351 + B4A SINE B4 139 251 -41 5 1552 288 336 137 46 chr1 126753710 126753972 -70441460 + B4 SINE B4 4 289 -3 5 1552 396 0 0 0 chr1 126753998 126754042 -70441390 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1552 412 270 89 9 chr1 126754466 126754578 -70440854 + RSINE1 SINE B4 17 137 -28 5 1552 4687 48 9 7 chr1 126755045 126755626 -70439806 + L1Md_F2 LINE L1 5988 6569 -13 5 1552 213 329 0 14 chr1 126755723 126755794 -70439638 + CT-rich Low_complexity Low_complexity 1 70 0 5 1552 229 298 37 46 chr1 126755873 126755982 -70439450 + MTEa LTR MaLR 272 379 0 5 1552 887 303 134 22 chr1 126756242 126756694 -70438738 + Charlie1 DNA MER1_type 1679 2181 -600 5 1552 563 342 48 44 chr1 126756694 126756942 -70438490 + B4 SINE B4 1 249 -43 5 1552 613 290 70 5 chr1 126757246 126757447 -70437985 + ID_B1 SINE B4 3 216 -8 5 1552 234 185 0 18 chr1 126757979 126758034 -70437398 + (TCTCTG)n Simple_repeat Simple_repeat 2 55 0 5 1552 360 293 199 28 chr1 126759315 126759526 -70435906 + MLT1A0 LTR MaLR 117 363 -2 5 1552 716 282 0 0 chr1 126759952 126760108 -70435324 - RSINE1 SINE B4 -7 158 3 5 1552 492 94 47 9 chr1 126760482 126760589 -70434843 + (TTG)n Simple_repeat Simple_repeat 2 112 0 5 1552 601 305 46 6 chr1 126760592 126760767 -70434665 + ID_B1 SINE B4 39 220 -4 5 1552 213 139 28 0 chr1 126760996 126761032 -70434400 + GA-rich Low_complexity Low_complexity 1 37 0 5 1552 189 0 0 0 chr1 126761046 126761067 -70434365 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1552 23 0 0 0 chr1 126761183 126761206 -70434226 + AT_rich Low_complexity Low_complexity 1 23 0 5 1552 827 46 9 0 chr1 126762004 126762112 -70433320 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1552 301 89 0 43 chr1 126762113 126762160 -70433272 + HAL1-3A_ME LINE L1 1974 2018 -840 5 1552 737 322 11 6 chr1 126762205 126762386 -70433046 + B3 SINE B2 3 184 -32 5 1552 440 72 14 0 chr1 126762392 126762461 -70432971 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1552 226 243 97 88 chr1 126762465 126762478 -70432954 + MT2B LTR ERVL 151 164 -437 5 1552 507 248 96 15 chr1 126762478 126762613 -70432819 + B1F2 SINE Alu 2 147 -2 5 1552 3256 266 76 28 chr1 126763860 126765130 -70430302 + Lx8 LINE L1 6135 7465 -8 5 1552 414 0 0 0 chr1 126765475 126765521 -70429911 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1552 468 0 0 0 chr1 126765521 126765572 -70429860 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1552 928 308 24 48 chr1 126765609 126765902 -70429530 - B4 SINE B4 -1 291 6 5 1552 1784 230 40 91 chr1 126766215 126766745 -70428687 + RMER19C LTR ERVK 109 611 0 5 1552 322 312 48 28 chr1 126766878 126767023 -70428409 + RMER15 LTR ERVL 427 574 -1 5 1552 757 273 28 0 chr1 126768624 126768840 -70426592 + ID_B1 SINE B4 3 224 0 5 1552 27 49 0 0 chr1 126768891 126768932 -70426500 + AT_rich Low_complexity Low_complexity 1 41 0 5 1552 965 261 126 66 chr1 126769111 126769460 -70425972 - MTE2a LTR MaLR -9 370 1 5 1552 513 0 0 0 chr1 126771373 126771430 -70424002 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1552 609 312 60 57 chr1 126771448 126771713 -70423719 - B4A SINE B4 -22 270 5 5 1552 340 292 10 40 chr1 126771862 126771962 -70423470 - RMER15 LTR ERVL -108 467 371 5 1552 524 268 107 0 chr1 126771977 126772145 -70423287 - Lx8 LINE L1 -256 7217 7032 5 1552 2570 166 2 19 chr1 126772233 126772544 -70422888 - MTC LTR MaLR -1 420 116 5 1552 3133 50 15 0 chr1 126772544 126772941 -70422491 + L1Md_F2 LINE L1 6180 6582 0 5 1552 2570 166 2 19 chr1 126772941 126773054 -70422378 - MTC LTR MaLR -306 115 3 5 1552 414 0 0 0 chr1 126773640 126773686 -70421746 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1552 513 298 77 95 chr1 126773717 126773991 -70421441 - B4 SINE B4 -19 273 5 5 1552 576 365 54 23 chr1 126774427 126774688 -70420744 + B4A SINE B4 2 270 -22 5 1552 443 87 14 0 chr1 126774688 126774757 -70420675 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1552 418 291 103 0 chr1 126774874 126775077 -70420355 + HAL1b LINE L1 1189 1412 -597 5 1552 245 29 0 29 chr1 126775697 126775732 -70419700 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1552 247 271 17 0 chr1 126775863 126775922 -70419510 + B4A SINE B4 9 68 -224 5 1552 522 0 0 0 chr1 126775930 126775988 -70419444 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1552 474 297 230 0 chr1 126775995 126776212 -70419220 - B4 SINE B4 -25 267 1 5 1552 707 212 39 43 chr1 126776671 126776878 -70418554 + Lx4B LINE L1 6801 7006 -52 5 1552 27 29 0 0 chr1 126776896 126776930 -70418502 + AT_rich Low_complexity Low_complexity 1 34 0 5 1552 1019 302 157 22 chr1 126777032 126777715 -70417717 + Lx8 LINE L1 6678 7452 -21 5 1552 6767 39 55 0 chr1 126778487 126779371 -70416061 + L1Md_F2 LINE L1 4654 5586 -297 5 1552 8129 43 1 2 chr1 126779372 126780367 -70415065 + L1Md_F2 LINE L1 5588 6581 -1 5 1552 180 111 0 0 chr1 126780374 126780401 -70415031 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1552 431 307 180 28 chr1 126780449 126780660 -70414772 + B4A SINE B4 12 254 -38 5 1552 474 132 0 0 chr1 126780681 126780757 -70414675 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1552 200 149 21 0 chr1 126781520 126781567 -70413865 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 1552 318 256 49 0 chr1 126781922 126782004 -70413428 + ID_B1 SINE B4 20 105 -119 5 1552 824 151 82 46 chr1 126782006 126782165 -70413267 + ORR1C1 LTR MaLR 1 154 -224 5 1552 780 83 0 0 chr1 126782165 126782274 -70413158 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1552 824 196 184 47 chr1 126782274 126782401 -70413031 + ORR1C1 LTR MaLR 155 304 -42 5 1552 296 212 0 0 chr1 126782637 126782703 -70412729 + MMERGLN-int LTR ERV1 5713 5778 -1778 5 1552 263 299 52 15 chr1 126782991 126783127 -70412305 + RNERVK23-int LTR ERVK 7554 7694 -523 5 1552 2158 85 139 11 chr1 126783319 126783700 -70411732 + RLTR47_MM LTR ERV1 1 430 -102 5 1552 209 87 109 0 chr1 126783700 126783746 -70411686 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1552 332 122 0 0 chr1 126783756 126783805 -70411627 + ORR1C1 LTR MaLR 330 378 0 5 1552 197 98 24 0 chr1 126784079 126784120 -70411312 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1552 833 257 5 20 chr1 126784249 126784444 -70410988 - B3A SINE B2 -5 193 2 5 1552 242 368 69 40 chr1 126784474 126784647 -70410785 - MER5A DNA MER1_type -6 183 6 5 1552 810 315 13 109 chr1 126784746 126784930 -70410502 - B4 SINE B4 -4 288 117 5 1552 4615 72 10 5 chr1 126784930 126785546 -70409886 + L1_Mus1 LINE L1 5947 6565 -2 5 1552 810 315 13 109 chr1 126785546 126785664 -70409768 - B4 SINE B4 -176 116 15 5 1552 251 301 124 19 chr1 126785667 126785691 -70409741 - B1F2 SINE Alu -1 148 33 5 1552 264 304 0 25 chr1 126785691 126785772 -70409660 - ID_B1 SINE B4 -32 192 114 5 1552 192 368 75 9 chr1 126785830 126785937 -70409495 - MIRc SINE MIR -138 130 17 5 1552 400 365 48 26 chr1 126786124 126786397 -70409035 - B4A SINE B4 -13 279 1 5 1552 921 179 82 46 chr1 126787758 126788039 -70407393 - Lx7 LINE L1 0 7696 7406 5 1552 6443 211 36 17 chr1 126788038 126790473 -70404959 - Lx7 LINE L1 -901 6795 4309 5 1552 628 214 7 0 chr1 126790474 126790619 -70404813 - Lx7 LINE L1 -2158 3722 3577 5 1552 3931 169 21 49 chr1 126790691 126791549 -70403883 - L1_Mur2 LINE L1 -13 5864 5031 5 1552 793 251 0 0 chr1 126791552 126791727 -70403705 + Lx5 LINE L1 6170 6344 -706 5 1552 534 16 0 0 chr1 126791926 126791989 -70403443 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 5 1552 787 291 53 45 chr1 126792182 126792448 -70402984 + B4 SINE B4 5 272 -20 5 1552 369 0 0 0 chr1 126792473 126792514 -70402918 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1552 222 333 40 20 chr1 126792871 126792972 -70402460 + L2c LINE L2 3275 3377 -10 5 1552 490 322 20 7 chr1 126793114 126793261 -70402171 - B1F SINE Alu 0 149 1 5 1552 23 33 0 0 chr1 126793435 126793465 -70401967 + AT_rich Low_complexity Low_complexity 1 30 0 5 1552 583 231 201 18 chr1 126794016 126794245 -70401187 + Lx4B LINE L1 6786 7056 -2 5 1552 398 330 0 0 chr1 126794256 126794362 -70401070 + PB1D10 SINE Alu 1 106 -11 5 1552 189 147 0 0 chr1 126794634 126794668 -70400764 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 5 1552 1534 174 19 1 chr1 126795172 126795441 -70399991 + RLTR12B LTR ERVK 1 271 -257 6 1552 1334 61 0 11 chr1 126795441 126795623 -70399809 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1552 256 277 56 73 chr1 126795623 126795638 -70399794 + RLTR12B LTR ERVK 235 249 -192 6 1552 1233 101 0 0 chr1 126795638 126795817 -70399615 + (GGA)n Simple_repeat Simple_repeat 2 180 0 6 1552 256 277 56 73 chr1 126795817 126795848 -70399584 + RLTR12B LTR ERVK 250 278 -163 6 1552 270 0 0 0 chr1 126795848 126795878 -70399554 + (GAA)n Simple_repeat Simple_repeat 1 30 0 6 1552 1265 230 7 14 chr1 126795878 126796165 -70399267 + RLTR12B LTR ERVK 244 528 0 6 1552 391 284 119 0 chr1 126796166 126796275 -70399157 + ID_B1 SINE B4 94 215 -9 6 1552 253 219 0 0 chr1 126796552 126796616 -70398816 + Lx9 LINE L1 7531 7594 -50 6 1552 375 265 96 32 chr1 126796695 126796851 -70398581 - Tigger6b DNA MER2_type -5 1592 1427 6 1552 848 310 42 39 chr1 126796873 126797158 -70398274 - B4A SINE B4 -5 287 2 6 1552 277 225 75 55 chr1 126797172 126797318 -70398114 - Tigger6b DNA MER2_type -158 1439 1291 6 1552 502 279 10 0 chr1 126797602 126797706 -70397726 + PB1D9 SINE Alu 8 112 -8 6 1552 499 335 71 63 chr1 126798318 126798570 -70396862 - B4 SINE B4 -27 265 12 6 1552 3301 234 53 12 chr1 126798724 126799608 -70395824 + Lx7 LINE L1 55 974 -6754 6 1552 3222 185 52 74 chr1 126799604 126800514 -70394918 + Lx7 LINE L1 3062 3951 -1929 6 1552 4452 160 65 22 chr1 126800600 126801509 -70393923 + RLTR22_Mur LTR ERVK 41 988 -860 6 1552 1072 211 36 36 chr1 126801727 126801967 -70393465 + RLTR22_Mur LTR ERVK 1587 1824 -24 6 1552 282 29 0 0 chr1 126801967 126802002 -70393430 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1552 3857 225 69 63 chr1 126802012 126805063 -70390369 + Lx7 LINE L1 3951 6819 -877 6 1552 4669 77 21 0 chr1 126805063 126805687 -70389745 + RLTR13D5 LTR ERVK 6 642 -381 6 1552 5637 107 0 15 chr1 126805708 126806575 -70388857 - L1_Mus1 LINE L1 0 5883 5030 6 1552 5322 49 1 0 chr1 126806575 126807227 -70388205 + L1_Mus1 LINE L1 5915 6567 0 6 1552 2301 126 19 89 chr1 126807239 126807489 -70387943 + RLTR13D5 LTR ERVK 626 866 -157 6 1552 1112 88 0 0 chr1 126807489 126807636 -70387796 + B1_Mus1 SINE Alu 2 148 0 6 1552 2301 126 19 89 chr1 126807636 126807811 -70387621 + RLTR13D5 LTR ERVK 867 1021 -2 6 1552 2109 258 18 100 chr1 126807816 126808583 -70386849 + Lx7 LINE L1 6848 7551 -145 6 1552 5194 100 12 65 chr1 126808743 126809591 -70385841 - RLTR13B4 LTR ERVK 0 803 1 6 1552 614 222 76 7 chr1 126809810 126809955 -70385477 + RSINE1 SINE B4 2 156 -9 6 1552 716 326 3 41 chr1 126810022 126810313 -70385119 + B4A SINE B4 1 280 -12 6 1552 525 44 0 0 chr1 126810326 126810394 -70385038 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1552 366 285 100 58 chr1 126811614 126811804 -70383628 - B3A SINE B2 0 198 1 6 1552 901 32 24 0 chr1 126812334 126812458 -70382974 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 6 1552 220 182 36 0 chr1 126812458 126812513 -70382919 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1552 253 319 16 115 chr1 126813232 126813423 -70382009 + MER5B DNA MER1_type 1 172 -6 6 1552 504 32 0 0 chr1 126813479 126813541 -70381891 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1552 574 318 40 63 chr1 126813552 126813851 -70381581 - MT2A LTR ERVL -75 458 167 6 1552 269 305 40 59 chr1 126813841 126813942 -70381490 - MTEa LTR MaLR -262 117 19 6 1552 1150 276 49 23 chr1 126815032 126815381 -70380051 + MTE2b LTR MaLR 1 358 -21 6 1552 468 0 0 0 chr1 126815604 126815656 -70379776 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1552 263 361 24 0 chr1 126815678 126815761 -70379671 - MER5A DNA MER1_type -40 149 65 6 1552 504 285 31 0 chr1 126815972 126816102 -70379330 - RSINE1 SINE B4 -29 136 3 6 1552 21 36 0 0 chr1 126816280 126816308 -70379124 + AT_rich Low_complexity Low_complexity 1 28 0 6 1552 577 363 0 6 chr1 126816308 126816466 -70378966 + RSINE1 SINE B4 5 161 -4 6 1552 282 116 0 0 chr1 126816469 126816512 -70378920 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1552 2421 137 28 0 chr1 126816789 126817184 -70378248 - Lx4A LINE L1 -1016 6042 5637 6 1552 3427 154 88 1 chr1 126817197 126817902 -70377530 + Lx4A LINE L1 6091 6937 -121 6 1552 757 274 75 8 chr1 126817913 126818167 -70377265 + B4 SINE B4 5 275 -17 6 1552 7596 64 0 42 chr1 126818506 126819318 -70376114 + L1Md_T LINE L1 59 836 -5686 6 1552 4487 36 0 0 chr1 126819318 126819846 -70375586 - L1Md_T LINE L1 0 6582 6055 6 1552 33778 42 1 3 chr1 126819846 126824514 -70370918 + L1Md_T LINE L1 837 5589 -297 6 1552 8506 34 0 0 chr1 126824514 126825510 -70369922 + L1Md_T LINE L1 5590 6585 0 6 1552 803 294 41 67 chr1 126825571 126825841 -70369591 + B4 SINE B4 19 281 -11 6 1552 1829 216 67 3 chr1 126825911 126826297 -70369135 + MTD LTR MaLR 1 411 -8 6 1552 472 267 142 23 chr1 126826691 126826864 -70368568 + B3A SINE B2 9 214 -2 6 1552 205 237 0 33 chr1 126828357 126828418 -70367014 + GA-rich Low_complexity Low_complexity 4 62 0 6 1552 188 170 43 0 chr1 126828442 126828489 -70366943 + GA-rich Low_complexity Low_complexity 4 52 0 6 1552 631 296 28 22 chr1 126828762 126828942 -70366490 + B4 SINE B4 93 273 -19 6 1552 426 271 195 0 chr1 126829275 126829393 -70366039 + RSINE1 SINE B4 3 143 -22 6 1552 534 16 0 0 chr1 126829400 126829463 -70365969 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1552 287 312 11 11 chr1 126830177 126830271 -70365161 + MTEa LTR MaLR 279 372 -7 6 1552 4293 103 40 25 chr1 126831080 126831806 -70363626 - Lx LINE L1 -194 6460 5783 6 1552 1014 117 0 0 chr1 126831806 126831943 -70363489 - B1_Mus2 SINE Alu -10 137 1 6 1552 1303 181 16 203 chr1 126831943 126831997 -70363435 - Lx LINE L1 -1268 5790 5745 6 1552 3147 43 53 2 chr1 126831997 126832394 -70363038 - L1Md_F2 LINE L1 -5 6577 6161 6 1552 1303 181 16 203 chr1 126832394 126832542 -70362890 - Lx LINE L1 -1314 5744 5610 6 1552 1048 141 0 0 chr1 126832540 126832703 -70362729 + Lx LINE L1 5461 5623 -260 6 1552 787 133 23 11 chr1 126833064 126833239 -70362193 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 6 1552 253 325 17 9 chr1 126833429 126833544 -70361888 + (CATA)n Simple_repeat Simple_repeat 4 119 0 6 1552 686 258 75 0 chr1 126834678 126834837 -70360595 + MTD LTR MaLR 29 199 -220 6 1552 708 88 0 0 chr1 126834921 126835012 -70360420 - B2_Mm2 SINE B2 -104 91 1 6 1552 317 215 0 16 chr1 126835012 126835079 -70360353 + MTD LTR MaLR 285 380 -39 6 1552 2576 131 29 14 chr1 126835275 126835693 -70359739 + Lx3B LINE L1 6546 6969 -4 6 1552 241 164 13 52 chr1 126835694 126835771 -70359661 + A-rich Low_complexity Low_complexity 5 78 0 6 1552 386 159 37 0 chr1 126835935 126836042 -70359390 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 6 1552 791 59 57 45 chr1 126836302 126836479 -70358953 + GA-rich Low_complexity Low_complexity 2 180 0 6 1552 390 297 112 94 chr1 126837106 126837392 -70358040 + B4A SINE B4 2 292 0 6 1552 531 0 0 0 chr1 126837402 126837461 -70357971 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1552 1010 303 23 0 chr1 126837622 126837886 -70357546 - B4A SINE B4 -4 288 19 6 1552 2371 204 40 80 chr1 126838202 126838672 -70356760 - L1_Rod LINE L1 -137 5710 5248 6 1552 278 26 26 0 chr1 126838672 126838711 -70356721 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1552 2371 204 40 80 chr1 126838711 126838802 -70356630 - L1_Rod LINE L1 -600 5247 5146 6 1552 1068 57 0 0 chr1 126838802 126838942 -70356490 + (TG)n Simple_repeat Simple_repeat 2 141 0 6 1552 2371 204 40 80 chr1 126838942 126839004 -70356428 - L1_Rod LINE L1 -702 5145 5103 6 1552 491 96 0 12 chr1 126839004 126839088 -70356344 - Lx2A LINE L1 -3 7005 6923 6 1552 2371 204 40 80 chr1 126839088 126839284 -70356148 - L1_Rod LINE L1 -745 5102 4922 6 1552 2037 224 20 31 chr1 126839265 126839854 -70355578 - L1_Rod LINE L1 -1593 4254 3672 6 1552 207 146 0 0 chr1 126839869 126839910 -70355522 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 6 1552 355 247 119 96 chr1 126839912 126840087 -70355345 - L1M4 LINE L1 -2450 3696 3509 6 1552 203 0 0 36 chr1 126840087 126840115 -70355317 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1552 355 247 119 96 chr1 126840115 126840158 -70355274 - L1M4 LINE L1 -2638 3508 3473 6 1552 4418 179 60 4 chr1 126840158 126840444 -70354988 - L1_Mur2 LINE L1 -2076 3801 3485 6 1552 315 49 0 0 chr1 126840444 126840485 -70354947 + (GGTTG)n Simple_repeat Simple_repeat 2 42 0 6 1552 4418 179 60 4 chr1 126840485 126841198 -70354234 - L1_Mur2 LINE L1 -2393 3484 2748 6 1552 623 199 0 34 chr1 126841202 126841348 -70354084 + L1_Mur1 LINE L1 2322 2462 -3424 6 1552 1393 179 178 5 chr1 126841355 126841536 -70353896 - MusHAL1 LINE L1 -1673 1039 833 6 1552 360 0 0 0 chr1 126841536 126841576 -70353856 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1552 1393 179 178 5 chr1 126841576 126841781 -70353651 - MusHAL1 LINE L1 -1880 832 586 6 1552 5046 208 27 21 chr1 126841823 126843547 -70351885 - L1_Rod LINE L1 -3369 2478 744 6 1552 356 362 50 0 chr1 126843615 126843836 -70351596 - L1_Rod LINE L1 -6860 748 517 6 1552 635 271 68 50 chr1 126843934 126844155 -70351277 - Lx6 LINE L1 -9 7451 7227 6 1552 850 284 6 0 chr1 126844490 126844673 -70350759 - ID_B1 SINE B4 -24 200 17 6 1552 243 0 0 0 chr1 126845272 126845299 -70350133 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1552 217 311 142 45 chr1 126845555 126845710 -70349722 - FAM SINE Alu -4 307 138 6 1552 924 257 34 10 chr1 126845578 126845786 -70349646 - ID_B1 SINE B4 -5 219 7 6 1552 279 59 0 0 chr1 126845810 126845844 -70349588 - BGLII_A LTR ERVK 0 445 412 6 1552 289 338 24 80 chr1 126846503 126846754 -70348678 + Lx8 LINE L1 7237 7473 0 6 1552 741 292 64 34 chr1 126846765 126846846 -70348586 + B4 SINE B4 3 87 -205 6 1552 227 31 31 0 chr1 126846846 126846878 -70348554 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 1552 741 292 64 34 chr1 126846878 126847062 -70348370 + B4 SINE B4 88 276 -16 6 1552 23 68 0 0 chr1 126847161 126847205 -70348227 + AT_rich Low_complexity Low_complexity 1 44 0 6 1552 499 326 0 0 chr1 126847549 126847678 -70347754 + B3A SINE B2 39 167 -31 6 1552 345 24 0 0 chr1 126847685 126847727 -70347705 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1552 855 82 0 0 chr1 126848018 126848152 -70347280 + (TG)n Simple_repeat Simple_repeat 2 135 0 6 1552 744 330 34 34 chr1 126848180 126848415 -70347017 - B4 SINE B4 -53 239 5 6 1552 737 287 112 24 chr1 126849043 126849293 -70346139 - B4A SINE B4 -20 272 1 6 1552 614 346 0 49 chr1 126849486 126849609 -70345823 + B3A SINE B2 5 125 -73 6 1552 3026 33 0 64 chr1 126849609 126849999 -70345433 + RLTR10B2 LTR ERVK 1 365 0 6 1552 614 319 37 56 chr1 126849999 126850091 -70345341 + B3A SINE B2 124 216 0 6 1552 689 186 7 67 chr1 126850094 126850244 -70345188 + B1_Mus2 SINE Alu 6 146 -1 6 1552 4308 110 53 0 chr1 126850427 126851071 -70344361 - RLTR33 LTR ERVK 0 678 1 6 1552 238 360 130 19 chr1 126851623 126851830 -70343602 - MLT1D LTR MaLR -133 372 143 6 1552 187 225 25 38 chr1 126852453 126852610 -70342822 + (TATG)n Simple_repeat Simple_repeat 1 155 0 6 1552 595 180 8 23 chr1 126852603 126852862 -70342570 + (TG)n Simple_repeat Simple_repeat 1 254 0 6 1552 514 189 11 39 chr1 126852886 126853068 -70342364 + (TG)n Simple_repeat Simple_repeat 1 177 0 6 1552 423 206 0 36 chr1 126853091 126853257 -70342175 + (TG)n Simple_repeat Simple_repeat 2 161 0 6 1552 478 280 154 55 chr1 126853298 126853551 -70341881 - B4A SINE B4 -12 280 3 6 1552 783 253 6 12 chr1 126853760 126853932 -70341500 - MER5B DNA MER1_type 0 178 8 6 1552 836 273 10 10 chr1 126854372 126854572 -70340860 + ID_B1 SINE B4 15 214 -10 6 1552 789 333 68 27 chr1 126854584 126855023 -70340409 + Lx8 LINE L1 7014 7470 -3 6 1552 383 342 58 19 chr1 126856313 126856519 -70338913 - RMER15 LTR ERVL -15 560 347 6 1552 29 0 0 0 chr1 126857752 126857781 -70337651 + AT_rich Low_complexity Low_complexity 1 29 0 7 1552 1425 206 24 30 chr1 126858425 126858761 -70336671 - RMER10A LTR ERVL -9 433 100 7 1552 2279 22 0 0 chr1 126858765 126859039 -70336393 - L1_Mm LINE L1 -209 5674 5401 7 1552 7672 60 0 0 chr1 126859039 126860002 -70335430 + L1Md_T LINE L1 5620 6582 0 7 1552 669 86 0 0 chr1 126860160 126860253 -70335179 + (TCC)n Simple_repeat Simple_repeat 2 94 0 7 1552 750 285 53 8 chr1 126860799 126861064 -70334368 - B4A SINE B4 -14 278 2 7 1552 477 0 0 0 chr1 126861131 126861184 -70334248 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1552 288 0 0 0 chr1 126861184 126861215 -70334217 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1552 1297 260 87 11 chr1 126861846 126862227 -70333205 - MTD LTR MaLR 0 419 10 7 1552 186 43 0 0 chr1 126862300 126862323 -70333109 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1552 349 202 0 0 chr1 126862422 126862511 -70332921 - Lx9 LINE L1 -5 7639 7551 7 1552 225 0 0 0 chr1 126862513 126862538 -70332894 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1552 36156 30 1 0 chr1 126862543 126868973 -70326459 - L1Md_T LINE L1 0 6585 56 7 1552 2577 164 35 45 chr1 126869182 126869694 -70325738 - RLTR28 LTR ERVL -16 508 2 7 1552 319 301 62 0 chr1 126869751 126869897 -70325535 - L1MA8 LINE L1 -106 6185 6031 7 1552 331 214 70 26 chr1 126870047 126870162 -70325270 - L1MA8 LINE L1 -321 5970 5851 7 1552 744 119 0 0 chr1 126870259 126870377 -70325055 + (TC)n Simple_repeat Simple_repeat 1 118 0 7 1552 4004 159 8 8 chr1 126870381 126871035 -70324397 - Lx4A LINE L1 0 7058 6405 7 1552 983 253 25 43 chr1 126871240 126871517 -70323915 + B4 SINE B4 4 275 -17 7 1552 399 41 0 0 chr1 126871555 126871604 -70323828 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1552 290 201 36 120 chr1 126872213 126872345 -70323087 - B1_Mur1 SINE Alu 0 149 3 7 1552 459 0 0 0 chr1 126872370 126872421 -70323011 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 7 1552 604 255 94 25 chr1 126872424 126872625 -70322807 - ID_B1 SINE B4 -8 216 2 7 1552 542 54 0 13 chr1 126873131 126873206 -70322226 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 7 1552 503 35 23 34 chr1 126873238 126873326 -70322106 + (TTGG)n Simple_repeat Simple_repeat 1 87 0 7 1552 692 199 22 0 chr1 126873326 126873462 -70321970 - B1_Mur1 SINE Alu -9 140 2 7 1552 1843 35 0 9 chr1 126873481 126873709 -70321723 + L1Md_F3 LINE L1 6345 6570 -14 7 1552 26 0 0 0 chr1 126873757 126873783 -70321649 + AT_rich Low_complexity Low_complexity 1 26 0 7 1552 221 240 13 39 chr1 126873786 126873864 -70321568 + GA-rich Low_complexity Low_complexity 5 80 0 7 1552 748 66 0 84 chr1 126873871 126874037 -70321395 + (GGGAA)n Simple_repeat Simple_repeat 4 155 0 7 1552 332 303 171 0 chr1 126874321 126874473 -70320959 - MER5A DNA MER1_type 0 189 12 7 1552 468 0 0 0 chr1 126874499 126874551 -70320881 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1552 366 23 0 0 chr1 126874551 126874593 -70320839 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1552 890 313 30 0 chr1 126874656 126874921 -70320511 - B4A SINE B4 -18 274 2 7 1552 727 303 55 30 chr1 126875101 126875336 -70320096 + B4 SINE B4 2 242 -50 7 1552 378 0 0 0 chr1 126875336 126875378 -70320054 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1552 208 143 0 0 chr1 126875439 126875474 -70319958 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 7 1552 467 78 13 0 chr1 126876059 126876136 -70319296 + (TG)n Simple_repeat Simple_repeat 2 79 0 7 1552 758 269 89 41 chr1 126876160 126876431 -70319001 - B4A SINE B4 -5 287 4 7 1552 346 362 68 21 chr1 126876674 126876908 -70318524 + L3 LINE CR1 3195 3439 -1050 7 24 554 242 16 8 chr1 126877657 126877786 -70317646 + B4 SINE B4 157 286 -6 7 1553 495 33 0 0 chr1 126877825 126877886 -70317546 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1553 799 224 131 21 chr1 126878519 126878756 -70316676 - RMER15 LTR ERVL 0 575 313 7 1553 328 341 145 36 chr1 126878988 126879122 -70316310 + L1ME3B LINE L1 5372 5506 -667 7 1553 425 270 209 0 chr1 126879122 126879191 -70316241 + B3A SINE B2 2 70 -128 7 1553 414 0 0 0 chr1 126879191 126879237 -70316195 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1553 425 270 209 0 chr1 126879237 126879315 -70316117 + B3A SINE B2 71 178 -20 7 1553 495 342 134 31 chr1 126879315 126879900 -70315532 + L1ME3B LINE L1 5507 6158 -82 7 1553 306 0 0 0 chr1 126880588 126880622 -70314810 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1553 639 277 28 22 chr1 126880857 126881038 -70314394 + B3A SINE B2 1 182 -16 7 1553 1170 249 7 17 chr1 126881362 126881652 -70313780 + B4 SINE B4 2 288 -4 7 1553 369 62 0 0 chr1 126881661 126881709 -70313723 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1553 30803 70 25 5 chr1 126881892 126883015 -70312417 - L1Md_F2 LINE L1 -4 6578 5453 7 1553 3155 93 0 16 chr1 126883015 126883464 -70311968 - L1Md_F2 LINE L1 -11 6571 6130 7 1553 30803 80 43 8 chr1 126883464 126888113 -70307319 - L1Md_F2 LINE L1 -431 5452 631 7 1553 634 214 146 0 chr1 126888749 126888955 -70306477 + Lx9 LINE L1 7407 7642 -2 7 1553 317 125 18 0 chr1 126889074 126889130 -70306302 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 7 1553 1362 220 137 152 chr1 126889484 126889615 -70305817 - MT2A LTR ERVL 0 533 444 7 1553 306 0 0 0 chr1 126889615 126889649 -70305783 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1553 1362 220 137 152 chr1 126889649 126890058 -70305374 - MT2A LTR ERVL -90 443 1 7 1553 1164 273 24 56 chr1 126890617 126890958 -70304474 + MTE2b LTR MaLR 50 379 0 7 1553 890 279 25 0 chr1 126891676 126891880 -70303552 + ID_B1 SINE B4 4 212 -12 7 1553 369 0 0 0 chr1 126892213 126892254 -70303178 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1553 339 331 41 16 chr1 126892299 126892467 -70302965 - ID_B1 SINE B4 -20 204 2 7 1553 496 268 71 35 chr1 126892564 126892692 -70302740 - L1MA5 LINE L1 -7 6293 6162 7 1553 1955 215 69 0 chr1 126892692 126893082 -70302350 - MTD LTR MaLR 0 419 3 7 1553 496 269 71 36 chr1 126893082 126893168 -70302264 - L1MA5 LINE L1 -138 6162 6075 7 1553 535 308 20 0 chr1 126893273 126893419 -70302013 + RSINE1 SINE B4 3 151 -14 7 1553 450 53 0 0 chr1 126893466 126893523 -70301909 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1553 511 306 173 16 chr1 126893701 126893950 -70301482 + B4A SINE B4 5 292 0 7 1553 297 51 0 0 chr1 126893973 126894012 -70301420 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1553 294 336 22 67 chr1 126894615 126894749 -70300683 - MER5A1 DNA MER1_type -36 130 3 7 1553 623 283 14 0 chr1 126895689 126895827 -70299605 + RSINE1 SINE B4 2 141 -24 7 1553 1577 191 162 15 chr1 126896538 126897075 -70298357 + Lx9 LINE L1 7022 7637 -7 7 1553 3706 20 2 0 chr1 126897082 126897477 -70297955 - MTA_Mm LTR MaLR 0 396 1 7 1553 648 198 48 0 chr1 126897568 126897694 -70297738 + B1_Mur3 SINE Alu 9 140 -9 7 1553 180 0 0 0 chr1 126897700 126897720 -70297712 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1553 372 323 0 0 chr1 126898006 126898099 -70297333 - RSINE1 SINE B4 -1 164 72 7 1553 411 297 27 9 chr1 126898213 126898325 -70297107 - B1F SINE Alu -2 147 34 7 1553 3307 106 41 4 chr1 126898424 126898909 -70296523 + L1_Mus3 LINE L1 6046 6548 -90 7 1553 25 51 0 0 chr1 126898971 126899010 -70296422 + AT_rich Low_complexity Low_complexity 1 39 0 7 1553 6457 71 1 0 chr1 126899142 126899907 -70295525 + L1_Mus1 LINE L1 5800 6565 -2 7 1553 4122 96 114 27 chr1 126899941 126900528 -70294904 + L1_Mus4 LINE L1 5957 6602 -34 7 1553 3282 75 2 2 chr1 126900528 126900928 -70294504 + MTB LTR MaLR 1 400 0 7 1553 4122 96 114 27 chr1 126900928 126900960 -70294472 + L1_Mus4 LINE L1 6603 6630 -6 7 1553 1100 296 75 3 chr1 126901033 126901395 -70294037 + Lx8 LINE L1 6925 7312 -161 7 1553 478 180 6 36 chr1 126901514 126901613 -70293819 + B1F SINE Alu 17 115 -34 7 1553 1755 209 0 0 chr1 126901630 126901937 -70293495 + Lx5 LINE L1 6146 6452 -598 7 1553 556 230 44 0 chr1 126902571 126902684 -70292748 + B3A SINE B2 1 118 -80 7 1553 690 294 19 23 chr1 126902887 126903103 -70292329 - B3 SINE B2 0 216 2 7 1553 210 118 0 0 chr1 126903117 126903151 -70292281 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7 1553 725 252 48 29 chr1 126903215 126903423 -70292009 - B4 SINE B4 -71 221 10 7 1553 920 287 42 97 chr1 126903660 126904018 -70291414 - MTD LTR MaLR -14 405 70 7 1553 5208 33 0 2 chr1 126904018 126904594 -70290838 - L1Md_T LINE L1 -1 6581 6007 7 1553 920 287 42 97 chr1 126904594 126904659 -70290773 - MTD LTR MaLR -350 69 5 7 1553 378 0 0 0 chr1 126905227 126905269 -70290163 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1553 982 335 7 7 chr1 126905306 126905577 -70289855 - B4 SINE B4 -20 272 2 7 1553 1050 243 106 71 chr1 126905766 126906134 -70289298 - MTD LTR MaLR -38 381 1 7 1553 285 321 0 0 chr1 126906488 126906569 -70288863 + B4 SINE B4 4 84 -208 7 1553 926 255 32 106 chr1 126906611 126907127 -70288305 - RLTR11B LTR ERVK -32 495 1 7 1553 507 112 0 0 chr1 126907154 126907234 -70288198 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1553 192 235 22 22 chr1 126908359 126908498 -70286934 + (TG)n Simple_repeat Simple_repeat 2 140 0 7 1553 1084 265 126 36 chr1 126908559 126908915 -70286517 - MTD LTR MaLR -14 405 18 7 1553 598 33 56 0 chr1 126908948 126909038 -70286394 + L1Md_F3 LINE L1 6490 6584 0 7 1553 516 280 122 36 chr1 126909044 126909240 -70286192 - B4A SINE B4 -78 214 1 7 1553 864 87 0 0 chr1 126909828 126909955 -70285477 + (TG)n Simple_repeat Simple_repeat 2 128 0 7 1553 615 257 7 0 chr1 126909955 126910091 -70285341 - B3A SINE B2 -61 137 1 7 1553 447 259 0 0 chr1 126910354 126910439 -70284993 + RSINE1 SINE B4 5 89 -76 7 1553 509 105 12 0 chr1 126910608 126910694 -70284738 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 1553 655 292 62 0 chr1 126911150 126911328 -70284104 + RMER30 DNA MER1_type 11 199 -3 8 1553 1306 170 4 22 chr1 126912499 126912727 -70282705 + URR1B DNA MER1_type 2 225 0 8 1553 593 366 62 8 chr1 126914186 126914442 -70280990 + B4A SINE B4 3 272 -20 8 1553 180 234 42 21 chr1 126914485 126914533 -70280899 + L2 LINE L2 1541 1589 -1830 8 1553 189 0 0 0 chr1 126914767 126914788 -70280644 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1553 525 32 0 0 chr1 126915043 126915106 -70280326 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 8 1553 837 56 0 0 chr1 126915130 126915237 -70280195 + (TGGA)n Simple_repeat Simple_repeat 3 109 0 8 1553 539 276 169 21 chr1 126915256 126915445 -70279987 + ID_B1 SINE B4 2 218 -6 8 1553 629 283 128 39 chr1 126915655 126915912 -70279520 + B4A SINE B4 3 282 -10 8 1553 258 32 0 0 chr1 126915970 126916001 -70279431 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1553 192 345 18 35 chr1 126916274 126916388 -70279044 - L2c LINE L2 0 3387 3276 8 1553 216 342 13 0 chr1 126916549 126916625 -70278807 + L2a LINE L2 3350 3426 0 8 1553 1073 290 20 47 chr1 126916810 126917043 -70278389 + B4A SINE B4 1 237 -55 8 1553 2555 98 3 0 chr1 126917043 126917369 -70278063 - ORR1A2 LTR MaLR 0 327 1 8 1553 1073 290 20 47 chr1 126917369 126917435 -70277997 + B4A SINE B4 238 292 0 8 1553 764 192 83 42 chr1 126917541 126917709 -70277723 - B4 SINE B4 -7 285 111 8 1553 259 319 42 0 chr1 126918240 126918312 -70277120 - B4A SINE B4 -2 290 216 8 1553 587 218 25 101 chr1 126918364 126918522 -70276910 - B3 SINE B2 -43 173 28 8 1553 823 278 60 26 chr1 126918513 126918746 -70276686 - B4A SINE B4 -43 249 9 8 1553 332 288 0 0 chr1 126919632 126919705 -70275727 + Lx8 LINE L1 6722 6794 -679 8 1553 707 233 33 7 chr1 126919708 126919869 -70275563 + B3A SINE B2 5 181 -12 8 1553 351 0 0 0 chr1 126920167 126920206 -70275226 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1553 1346 259 101 40 chr1 126920241 126920696 -70274736 + Lx8 LINE L1 6817 7299 -174 8 1553 423 0 0 0 chr1 126920701 126920748 -70274684 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1553 601 290 37 37 chr1 126921544 126921683 -70273749 - B4A SINE B4 -14 278 140 8 1553 2131 77 30 20 chr1 126921683 126921987 -70273445 + IAPLTR2b LTR ERVK 1 307 -20 8 1553 432 310 69 0 chr1 126921993 126922138 -70273294 - B4A SINE B4 -137 155 1 8 1553 480 290 48 0 chr1 126922473 126922597 -70272835 + ID_B1 SINE B4 14 143 -81 8 1553 409 352 23 0 chr1 126922633 126922761 -70272671 + B4A SINE B4 1 131 -161 8 1553 406 147 59 0 chr1 126922754 126922822 -70272610 + B1_Mur4 SINE Alu 72 143 -7 8 1553 382 274 74 0 chr1 126922899 126922994 -70272438 - B4 SINE B4 -190 102 1 8 1553 210 91 0 0 chr1 126923459 126923492 -70271940 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 8 1553 319 358 65 24 chr1 126924867 126924990 -70270442 + RSINE1 SINE B4 36 163 -2 8 1553 271 221 88 0 chr1 126925365 126925433 -70269999 - MTD LTR MaLR -24 395 322 8 1553 549 207 94 8 chr1 126925438 126925555 -70269877 + B1_Mus2 SINE Alu 1 127 -20 8 1553 279 0 0 0 chr1 126925563 126925594 -70269838 + (CAA)n Simple_repeat Simple_repeat 1 31 0 8 1553 588 246 74 53 chr1 126925981 126926170 -70269262 - B3A SINE B2 0 216 24 8 1553 271 54 27 0 chr1 126926260 126926297 -70269135 - L1_Mus3 LINE L1 -525 6113 6076 8 1553 643 35 11 0 chr1 126926297 126926384 -70269048 + L1_Mus3 LINE L1 6547 6634 -4 8 1553 847 290 10 10 chr1 126926764 126926966 -70268466 + B4 SINE B4 4 205 -87 8 1553 204 40 0 0 chr1 126927012 126927037 -70268395 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1553 256 290 19 65 chr1 126927567 126927674 -70267758 - RLTR14-int LTR ERV1 -729 4588 4487 8 1553 361 304 83 47 chr1 126928703 126929000 -70266432 - RLTR14-int LTR ERV1 -1883 3434 3221 8 1553 354 203 0 86 chr1 126929539 126929620 -70265812 + B4 SINE B4 219 292 0 8 1553 1074 97 4 0 chr1 126930633 126930860 -70264572 + (TC)n Simple_repeat Simple_repeat 1 227 0 8 1553 370 306 87 74 chr1 126930920 126931149 -70264283 - RMER15 LTR ERVL 0 575 344 8 1553 323 157 14 0 chr1 126931196 126931266 -70264166 + (CATA)n Simple_repeat Simple_repeat 2 72 0 8 1553 315 307 167 27 chr1 126932170 126932428 -70263004 + Lx8 LINE L1 7180 7473 0 8 1553 1111 87 7 0 chr1 126932552 126932690 -70262742 + B1_Mus2 SINE Alu 2 140 -7 8 1553 186 71 0 0 chr1 126932769 126932797 -70262635 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1553 342 67 0 0 chr1 126932800 126932845 -70262587 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 8 1553 548 291 108 45 chr1 126933248 126933492 -70261940 + L1MB1 LINE L1 5787 6048 -120 8 1553 1515 242 38 8 chr1 126933492 126933858 -70261574 + MTEa LTR MaLR 3 379 0 8 1553 548 291 108 45 chr1 126933858 126933947 -70261485 + L1MB1 LINE L1 6049 6141 -27 8 1553 652 258 103 0 chr1 126934559 126934714 -70260718 + ID_B1 SINE B4 21 191 -33 8 1553 384 270 0 90 chr1 126934610 126934732 -70260700 + PB1D10 SINE Alu 7 117 0 8 1553 249 331 100 23 chr1 126934778 126934908 -70260524 - L2b LINE L2 0 3375 3236 8 1553 1090 269 81 26 chr1 126934984 126935284 -70260148 + MTD LTR MaLR 1 317 -102 8 1553 1775 155 163 6 chr1 126935284 126935627 -70259805 + MTC LTR MaLR 1 397 -24 8 1553 349 186 209 0 chr1 126935644 126935730 -70259702 + MTD LTR MaLR 316 419 0 8 1553 632 173 265 45 chr1 126936177 126936379 -70259053 - ORR1C2 LTR MaLR 0 384 165 8 1553 682 237 147 15 chr1 126936689 126936886 -70258546 + ID_B1 SINE B4 2 224 0 8 1553 234 62 0 0 chr1 126937323 126937355 -70258077 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1553 438 20 0 0 chr1 126937355 126937405 -70258027 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1553 528 167 0 0 chr1 126937429 126937525 -70257907 + (TA)n Simple_repeat Simple_repeat 2 97 0 8 1553 366 211 0 13 chr1 126937528 126937605 -70257827 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1553 555 231 0 0 chr1 126937725 126937859 -70257573 + (TATG)n Simple_repeat Simple_repeat 3 136 0 8 1553 1261 56 0 0 chr1 126937859 126938001 -70257431 - B1_Mm SINE Alu -2 145 4 8 1553 575 311 20 96 chr1 126938043 126938195 -70257237 - B4A SINE B4 -10 282 132 8 1553 1638 194 131 39 chr1 126938195 126938577 -70256855 - MTD LTR MaLR 0 419 3 8 1553 575 311 20 96 chr1 126938577 126938716 -70256716 - B4A SINE B4 -161 131 13 8 1553 276 220 0 0 chr1 126938889 126938948 -70256484 - Lx4B LINE L1 -672 6386 6328 8 1553 2290 236 61 5 chr1 126938946 126939520 -70255912 + Lx2B LINE L1 6377 6982 -18 8 1553 565 239 44 42 chr1 126939531 126939700 -70255732 + B3A SINE B2 39 216 0 8 1553 26 30 0 0 chr1 126940149 126940182 -70255250 + AT_rich Low_complexity Low_complexity 1 33 0 8 1553 375 322 40 20 chr1 126940182 126940331 -70255101 - Lx8 LINE L1 -389 7084 6933 8 1553 181 312 21 0 chr1 126940816 126940864 -70254568 + MIR SINE MIR 90 138 -70 8 1553 488 306 19 77 chr1 126941374 126941530 -70253902 - B4A SINE B4 -143 149 3 8 1553 1757 245 22 19 chr1 126942317 126942729 -70252703 - MTD LTR MaLR -6 413 1 8 1553 279 330 70 0 chr1 126942789 126942889 -70252543 + MIR SINE MIR 18 124 -84 8 1553 258 284 0 0 chr1 126943976 126944057 -70251375 + L1MA5 LINE L1 6209 6289 -11 8 1553 336 349 101 32 chr1 126944254 126944473 -70250959 + Tigger5 DNA MER2_type 1 234 -2172 8 1553 604 266 40 45 chr1 126944744 126944921 -70250511 - MTEb LTR MaLR -7 372 197 8 1553 420 20 0 0 chr1 126945214 126945263 -70250169 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1553 540 326 69 18 chr1 126945296 126945571 -70249861 - B4A SINE B4 0 292 4 8 1553 292 260 81 48 chr1 126945727 126945913 -70249519 - L1MC5 LINE L1 -714 7247 7056 8 1553 627 312 153 8 chr1 126946359 126946538 -70248894 + B4A SINE B4 1 214 -78 8 1553 219 36 0 0 chr1 126946538 126946566 -70248866 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1553 627 312 153 8 chr1 126946566 126946641 -70248791 + B4A SINE B4 215 291 -1 8 1553 8947 101 29 16 chr1 126946987 126948299 -70247133 + Lx3_Mus LINE L1 5673 7001 -8 8 1553 22 35 0 0 chr1 126948303 126948332 -70247100 + AT_rich Low_complexity Low_complexity 1 29 0 8 1553 265 318 131 0 chr1 126948621 126948728 -70246704 + MTE2a LTR MaLR 1 121 -258 8 1553 215 143 0 39 chr1 126948742 126948793 -70246639 + (TGG)n Simple_repeat Simple_repeat 1 49 0 8 1553 273 374 25 34 chr1 126948804 126948923 -70246509 - RSINE1 SINE B4 -13 152 35 8 1553 940 306 31 18 chr1 126948906 126949223 -70246209 + MTE2b LTR MaLR 62 379 0 8 1553 1210 276 31 59 chr1 126949996 126950350 -70245082 + ORR1E LTR MaLR 7 350 -9 8 1553 383 271 133 81 chr1 126950856 126951029 -70244403 - B3A SINE B2 -16 182 1 8 1553 589 314 65 22 chr1 126951835 126952112 -70243320 - B4A SINE B4 -2 290 2 8 1553 574 303 19 44 chr1 126952588 126952747 -70242685 + RSINE1 SINE B4 11 165 0 8 1553 646 283 79 26 chr1 126953039 126953228 -70242204 + B3A SINE B2 3 201 -15 8 1553 21 0 0 0 chr1 126953340 126953361 -70242071 + AT_rich Low_complexity Low_complexity 1 21 0 8 1553 555 319 21 0 chr1 126953385 126953526 -70241906 + ID_B1 SINE B4 80 223 -1 8 1553 476 305 35 0 chr1 126953594 126953735 -70241697 - MLT1A0 LTR MaLR -7 358 213 8 1553 1009 219 42 17 chr1 126953737 126953974 -70241458 - RLTR14 LTR ERV1 -2 380 138 8 1553 215 132 38 0 chr1 126953979 126954032 -70241400 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 8 1553 393 22 0 0 chr1 126954704 126954750 -70240682 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1553 1151 232 54 43 chr1 126954751 126955030 -70240402 - MTEb LTR MaLR -24 355 74 8 1553 3472 89 17 4 chr1 126955039 126955502 -70239930 - L1_Mus3 LINE L1 0 6638 6170 9 1553 1249 88 0 58 chr1 126955522 126955728 -70239704 + Lx3_Mus LINE L1 6049 6242 -767 9 1553 808 289 7 11 chr1 126956492 126956749 -70238683 + L1MA4 LINE L1 5337 5593 -707 9 1553 595 264 15 3 chr1 126956750 126956994 -70238438 + L1MA4 LINE L1 5760 6012 -285 9 1553 238 349 85 40 chr1 126957265 126957593 -70237839 - L1M5 LINE L1 -269 5855 5513 9 1553 727 289 20 30 chr1 126957671 126957871 -70237561 - B3A SINE B2 0 198 1 9 1553 21 57 0 0 chr1 126957961 126957996 -70237436 + AT_rich Low_complexity Low_complexity 1 35 0 9 1553 708 266 129 19 chr1 126958240 126958657 -70236775 + RMER5 LTR ERV1 72 534 0 9 1553 2231 138 0 58 chr1 126958784 126959130 -70236302 - ORR1A3 LTR MaLR 0 326 1 9 1553 9535 145 143 34 chr1 126959132 126960897 -70234535 - ORR1A3-int LTR MaLR -2 1961 4 9 1553 2174 117 33 60 chr1 126960898 126961233 -70234199 - ORR1A3 LTR MaLR 0 326 1 9 1553 367 367 0 13 chr1 126961649 126961798 -70233634 + RMER15 LTR ERVL 273 419 -156 9 1553 932 275 53 45 chr1 126962637 126963018 -70232414 - MTD LTR MaLR -13 366 10 9 1553 910 221 33 24 chr1 126963069 126963282 -70232150 - ORR1D1 LTR MaLR -2 372 158 9 1553 390 85 0 0 chr1 126963287 126963346 -70232086 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1553 854 201 11 38 chr1 126963346 126963532 -70231900 - ORR1D1 LTR MaLR -193 181 1 9 1553 216 364 38 30 chr1 126963959 126964092 -70231340 - L2b LINE L2 0 3375 3242 9 1553 347 294 78 16 chr1 126964095 126964223 -70231209 + Lx8 LINE L1 6975 7110 -363 9 1553 24 0 0 0 chr1 126964528 126964552 -70230880 + AT_rich Low_complexity Low_complexity 1 24 0 9 1553 1345 67 17 0 chr1 126965518 126965696 -70229736 - L1_Mus1 LINE L1 -484 6083 5903 9 1553 4041 71 18 12 chr1 126965696 126966196 -70229236 + L1_Mus1 LINE L1 6065 6567 0 9 1553 412 295 85 54 chr1 126966218 126966347 -70229085 + RSINE1 SINE B4 4 136 -29 9 1553 779 250 79 19 chr1 126967213 126967429 -70228003 + B4 SINE B4 1 229 -63 9 1553 290 287 92 43 chr1 126967467 126967631 -70227801 + Lx8 LINE L1 7300 7471 -2 9 1553 249 295 26 0 chr1 126967637 126967715 -70227717 + B4A SINE B4 209 288 -4 9 1553 261 0 0 0 chr1 126967740 126967769 -70227663 + (CCA)n Simple_repeat Simple_repeat 1 29 0 9 1553 838 258 22 0 chr1 126968680 126968858 -70226574 - ID_B1 SINE B4 -41 183 2 9 1553 207 0 0 0 chr1 126969171 126969194 -70226238 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1553 662 0 13 0 chr1 126969194 126969271 -70226161 + (GA)n Simple_repeat Simple_repeat 1 79 0 9 1553 517 321 49 60 chr1 126969284 126969569 -70225863 - B4 SINE B4 -6 286 5 9 1553 807 267 162 30 chr1 126969695 126970028 -70225404 + MTEa LTR MaLR 1 377 -2 9 1553 404 318 40 31 chr1 126970479 126970706 -70224726 + L1M4 LINE L1 4630 4858 -1288 9 1553 261 163 0 0 chr1 126970745 126970794 -70224638 + (TGG)n Simple_repeat Simple_repeat 3 51 0 9 1553 674 258 43 76 chr1 126970816 126971026 -70224406 - ID_B1 SINE B4 -20 204 2 9 1553 1051 302 52 80 chr1 126971055 126971399 -70224033 - RMER19C LTR ERVK 0 902 583 9 1553 305 62 21 0 chr1 126971399 126971447 -70223985 + (TTG)n Simple_repeat Simple_repeat 2 50 0 9 1553 1139 221 63 111 chr1 126971447 126971836 -70223596 - RMER19C LTR ERVK -320 582 1 9 1553 420 20 0 0 chr1 126971972 126972021 -70223411 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1553 358 276 41 57 chr1 126972472 126972595 -70222837 + RMER19A LTR ERVK 342 462 -275 9 1553 266 381 63 70 chr1 126972903 126973174 -70222258 + B4 SINE B4 2 270 -22 9 1553 204 40 0 0 chr1 126973805 126973830 -70221602 + (TA)n Simple_repeat Simple_repeat 2 26 0 9 1553 34 24 0 0 chr1 126974137 126974178 -70221254 + AT_rich Low_complexity Low_complexity 1 41 0 9 1553 347 217 0 42 chr1 126974198 126974270 -70221162 - MTE2b LTR MaLR -310 69 1 9 1553 827 262 35 13 chr1 126975370 126975602 -70219830 - MTE2b LTR MaLR -142 237 1 9 1553 491 263 26 0 chr1 126975839 126975953 -70219479 + RSINE1 SINE B4 43 159 -6 9 1553 1156 205 5 24 chr1 126976232 126976437 -70218995 + B3 SINE B2 2 202 -14 9 1553 527 271 50 0 chr1 126976452 126976592 -70218840 + B1_Mur2 SINE Alu 3 149 0 9 1553 246 329 120 19 chr1 126977028 126977186 -70218246 - MIRb SINE MIR -31 237 64 9 1553 213 121 0 0 chr1 126977578 126977611 -70217821 + (TGG)n Simple_repeat Simple_repeat 1 33 0 9 1553 1239 259 22 34 chr1 126977611 126977935 -70217497 - ORR1E LTR MaLR -36 323 4 9 1553 726 261 69 20 chr1 126978022 126978225 -70217207 - MTE-int LTR MaLR -170 1410 1198 9 1553 1108 229 187 102 chr1 126978273 126978754 -70216678 - MT2A LTR ERVL -11 522 1 9 1553 3311 302 65 22 chr1 126978754 126979850 -70215582 - MTE-int LTR MaLR -403 1177 34 9 1553 1148 283 87 28 chr1 126979856 126980212 -70215220 - MTEb LTR MaLR 0 379 3 9 1553 337 294 49 24 chr1 126980291 126980455 -70214977 - L1MC LINE L1 -2260 3886 3719 9 1553 323 136 17 0 chr1 126981033 126981092 -70214340 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1553 372 303 89 31 chr1 126981148 126981373 -70214059 - L1M6 LINE L1 -4674 1822 1585 9 1553 716 259 15 15 chr1 126982549 126982745 -70212687 + Lx8 LINE L1 7041 7236 -237 9 1553 519 85 0 0 chr1 126982760 126982842 -70212590 + (TC)n Simple_repeat Simple_repeat 1 82 0 9 1553 417 20 0 0 chr1 126982842 126982892 -70212540 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1553 486 0 0 0 chr1 126982957 126983011 -70212421 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 9 1553 272 211 155 0 chr1 126983138 126983209 -70212223 - ID_B1 SINE B4 -21 203 122 9 1553 1174 89 7 0 chr1 126983406 126983552 -70211880 - B1_Mus2 SINE Alu 0 147 1 9 1553 537 275 45 8 chr1 126983946 126984078 -70211354 + ID_B1 SINE B4 87 223 -1 9 1553 298 222 0 31 chr1 126984471 126984536 -70210896 + B4 SINE B4 3 65 -227 9 1553 1011 139 0 0 chr1 126984557 126984723 -70210709 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 9 1553 798 300 58 60 chr1 126984724 126984757 -70210675 + RMER1A Other Other 185 211 -819 9 1553 2931 70 3 0 chr1 126984757 126985102 -70210330 + ORR1A1 LTR MaLR 1 346 0 9 1553 3140 228 53 21 chr1 126985102 126985871 -70209561 + RMER1B Other Other 7 953 -113 9 1553 7312 44 2 5 chr1 126985857 126986744 -70208688 - L1Md_F2 LINE L1 -4 6578 5694 9 1553 2745 35 0 0 chr1 126986742 126987056 -70208376 + L1Md_F2 LINE L1 5382 5695 -188 9 1553 619 160 23 39 chr1 126987055 126987185 -70208247 + RMER1B Other Other 939 1066 0 9 1553 380 319 36 30 chr1 126987199 126987374 -70208058 + B4A SINE B4 106 289 -3 9 1553 234 255 0 0 chr1 126987376 126987427 -70208005 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1553 39674 45 7 1 chr1 126987561 126993892 -70201540 - L1Md_T LINE L1 0 6582 273 9 1553 705 269 19 0 chr1 126994157 126994313 -70201119 + B3A SINE B2 9 167 -31 9 1553 451 321 126 55 chr1 126994476 126994730 -70200702 - MTEa LTR MaLR -107 272 1 9 1553 253 216 85 0 chr1 126994883 126994971 -70200461 - L2a LINE L2 -87 3339 3221 9 1553 377 256 36 65 chr1 126995302 126995440 -70199992 + B4 SINE B4 100 233 -59 9 1553 322 273 230 10 chr1 126995437 126995537 -70199895 + RSINE1 SINE B4 8 129 -36 9 1553 323 247 0 13 chr1 126995579 126995657 -70199775 + B4 SINE B4 215 291 -1 9 1553 209 204 0 0 chr1 126995658 126995702 -70199730 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1553 367 266 82 110 chr1 126995840 126996022 -70199410 - RMER15 LTR ERVL -3 572 396 9 1553 1461 250 61 29 chr1 126996056 126996457 -70198975 - MTD LTR MaLR -14 405 1 9 1553 358 348 63 56 chr1 126996504 126996772 -70198660 - Lx8 LINE L1 -182 7291 7022 9 1553 414 0 0 0 chr1 126996829 126996875 -70198557 + (GA)n Simple_repeat Simple_repeat 2 47 0 9 1553 341 43 21 0 chr1 126996880 126996927 -70198505 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 9 1553 477 301 145 23 chr1 126997225 126997439 -70197993 + MLT1E LTR MaLR 369 608 -45 9 1553 485 258 6 0 chr1 126998413 126998576 -70196856 + (TA)n Simple_repeat Simple_repeat 2 165 0 9 1553 21 0 0 0 chr1 126998615 126998636 -70196796 + AT_rich Low_complexity Low_complexity 1 21 0 9 1553 204 40 0 0 chr1 126998773 126998798 -70196634 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 1553 413 246 0 122 chr1 127000000 127000082 -70195350 + B4 SINE B4 148 228 -64 1 1553 640 242 0 20 chr1 127000082 127000234 -70195198 + B1_Mur1 SINE Alu 1 149 0 2 1553 413 246 0 122 chr1 127000234 127000290 -70195142 + B4 SINE B4 229 269 -23 1 1553 279 0 0 0 chr1 127000290 127000321 -70195111 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1553 252 122 0 0 chr1 127000594 127000635 -70194797 + (CCCCCT)n Simple_repeat Simple_repeat 6 46 0 4 1553 378 42 0 0 chr1 127000644 127000692 -70194740 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1553 414 0 0 0 chr1 127000692 127000737 -70194695 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1553 21 57 0 0 chr1 127001288 127001323 -70194109 + AT_rich Low_complexity Low_complexity 1 35 0 7 1553 449 327 50 50 chr1 127002218 127002440 -70192992 + Lx8 LINE L1 7044 7265 -208 8 1553 238 228 37 37 chr1 127002445 127002527 -70192905 + RMER15 LTR ERVL 433 514 -61 9 1553 3266 109 69 6 chr1 127003338 127003843 -70191589 - Lx2 LINE L1 -1 6996 6460 1 1553 205 191 0 0 chr1 127004096 127004138 -70191294 + T-rich Low_complexity Low_complexity 1 42 0 1 1553 295 119 136 0 chr1 127004271 127004330 -70191102 - Lx2 LINE L1 -319 6678 6612 1 1553 926 299 7 24 chr1 127004431 127004726 -70190706 + B4 SINE B4 1 290 -2 1 1553 468 309 57 41 chr1 127005103 127005349 -70190083 + L1ME1 LINE L1 5713 5962 -217 1 1553 1019 261 27 27 chr1 127005477 127005769 -70189663 + B4 SINE B4 1 292 0 1 1553 21 0 0 0 chr1 127005902 127005923 -70189509 + AT_rich Low_complexity Low_complexity 1 21 0 1 1553 273 252 32 80 chr1 127006048 127006173 -70189259 + Lx8 LINE L1 7355 7473 0 1 1553 838 191 26 26 chr1 127006205 127006399 -70189033 - Lx4B LINE L1 0 7058 6865 1 1553 1604 268 136 17 chr1 127006492 127007088 -70188344 - Lx8 LINE L1 -2 7471 6805 1 1553 1824 277 80 30 chr1 127007119 127007474 -70187958 + Lx8 LINE L1 6160 6513 -960 2 1553 240 35 0 0 chr1 127007474 127007503 -70187929 + (TGG)n Simple_repeat Simple_repeat 3 31 0 2 1553 1824 277 80 30 chr1 127007503 127007758 -70187674 + Lx8 LINE L1 6514 6800 -673 2 1553 451 312 50 28 chr1 127008542 127008723 -70186709 - B4A SINE B4 -44 248 64 2 1554 269 262 37 12 chr1 127008828 127008909 -70186523 + RSINE1 SINE B4 83 165 0 2 1554 564 286 56 87 chr1 127009503 127009698 -70185734 + B3A SINE B2 7 195 -3 2 1554 8533 27 6 0 chr1 127010293 127011428 -70184004 - L1Md_T LINE L1 0 6582 5444 2 1554 697 318 18 5 chr1 127011701 127011919 -70183513 + B4 SINE B4 3 223 -69 2 1554 771 42 0 0 chr1 127011919 127012014 -70183418 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 2 1554 688 94 0 0 chr1 127012089 127012185 -70183247 + L1_Mus1 LINE L1 4066 4161 -1722 2 1554 1014 77 0 7 chr1 127012187 127012330 -70183102 + B1_Mm SINE Alu 6 147 0 2 1554 12152 89 4 3 chr1 127012330 127014725 -70180707 + L1_Mus1 LINE L1 4144 6544 -23 2 1554 423 237 108 41 chr1 127014737 127014918 -70180514 - MTE2a LTR MaLR -30 349 159 3 1554 532 278 0 0 chr1 127014996 127015122 -70180310 + B3 SINE B2 83 208 -8 3 1554 216 67 0 0 chr1 127015122 127015152 -70180280 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1554 246 176 0 0 chr1 127015232 127015283 -70180149 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 3 1554 220 214 0 35 chr1 127015296 127015354 -70180078 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1554 350 360 9 0 chr1 127015890 127016004 -70179428 + MTEa LTR MaLR 54 168 -211 3 1554 693 251 32 88 chr1 127016020 127016269 -70179163 - RMER2 LTR ERV1 -45 522 288 3 1554 947 194 128 58 chr1 127016482 127016756 -70178676 - RMER2 LTR ERV1 -259 308 16 3 1554 625 192 17 0 chr1 127016783 127016903 -70178529 + MTEa LTR MaLR 194 315 -64 3 1554 472 198 116 9 chr1 127016921 127017033 -70178399 + MTE2a LTR MaLR 242 365 -14 3 1554 245 263 32 73 chr1 127017137 127017260 -70178172 + L1M3 LINE L1 4872 4989 -1151 3 1554 423 212 0 0 chr1 127017490 127017634 -70177798 + (TG)n Simple_repeat Simple_repeat 1 144 0 3 1554 301 337 30 24 chr1 127017675 127017842 -70177590 + MIR3 SINE MIR 38 205 -3 4 1554 697 322 28 45 chr1 127018551 127018837 -70176595 + B4 SINE B4 11 291 -1 4 1554 934 252 24 0 chr1 127019517 127019723 -70175709 - B3 SINE B2 -5 211 1 4 1554 731 243 0 7 chr1 127019737 127019886 -70175546 - B1_Mur1 SINE Alu 0 149 2 4 1554 836 259 49 14 chr1 127020036 127020259 -70175173 + B4A SINE B4 2 232 -60 4 1554 390 147 0 0 chr1 127020279 127020347 -70175085 + (TCC)n Simple_repeat Simple_repeat 1 68 0 4 1554 525 232 93 9 chr1 127021328 127021482 -70173950 + B3A SINE B2 1 180 -36 4 1554 506 247 202 36 chr1 127021675 127021923 -70173509 - B4A SINE B4 -3 289 1 4 1554 483 63 0 0 chr1 127023219 127023282 -70172150 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1554 776 143 4 47 chr1 127023337 127023571 -70171861 + (TTG)n Simple_repeat Simple_repeat 1 224 0 4 1554 672 268 54 16 chr1 127023586 127023772 -70171660 - B4 SINE B4 -98 194 2 5 1554 6817 104 18 1 chr1 127024583 127025532 -70169900 + L1_Mus4 LINE L1 5672 6636 0 5 1554 512 290 96 5 chr1 127025706 127025893 -70169539 + RMER15 LTR ERVL 354 557 -18 5 1554 306 248 151 8 chr1 127026263 127026389 -70169043 - L1MC4a LINE L1 -8 7874 7764 5 1554 1594 197 97 17 chr1 127027051 127027402 -70168030 - MTEa LTR MaLR 0 379 1 5 1554 288 258 52 31 chr1 127028164 127028260 -70167172 + PB1D10 SINE Alu 2 99 -18 5 1554 500 268 0 11 chr1 127028305 127028486 -70166946 + GA-rich Low_complexity Low_complexity 1 179 0 5 1554 391 90 75 0 chr1 127028558 127028625 -70166807 - ORR1A2 LTR MaLR 0 327 256 5 1554 189 0 0 0 chr1 127028758 127028779 -70166653 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1554 13257 52 0 0 chr1 127028824 127031290 -70164142 + L1Md_T LINE L1 410 2973 -2913 5 1554 36187 35 0 0 chr1 127031286 127036746 -70158686 + L1Md_T LINE L1 33 5589 -297 6 1554 8991 9 0 0 chr1 127036746 127037730 -70157702 + L1Md_T LINE L1 5590 6573 -12 6 1554 234 0 0 0 chr1 127037749 127037775 -70157657 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1554 22960 21 0 0 chr1 127037775 127040412 -70155020 + L1Md_T LINE L1 2953 5589 -297 5 1554 9095 5 0 0 chr1 127040412 127041398 -70154034 + L1Md_T LINE L1 5590 6575 -10 5 1554 2202 169 54 26 chr1 127041398 127041823 -70153609 - RMER10A LTR ERVL -1 441 5 6 1554 333 0 0 0 chr1 127041823 127041860 -70153572 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1554 3087 92 2 0 chr1 127042909 127043323 -70152109 + Lx3_Mus LINE L1 6595 7009 0 6 1554 681 255 56 38 chr1 127043449 127043740 -70151692 + L1ME2 LINE L1 5833 6134 -30 6 1554 252 0 0 0 chr1 127044072 127044100 -70151332 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 6 1554 491 88 160 42 chr1 127044190 127044309 -70151123 - Lx9 LINE L1 -1 7643 7511 6 1554 234 0 0 0 chr1 127044312 127044338 -70151094 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1554 489 34 0 0 chr1 127044338 127044396 -70151036 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1554 1043 248 40 95 chr1 127044621 127045022 -70150410 - MTE2a LTR MaLR 0 379 1 7 1554 471 301 52 13 chr1 127045188 127045343 -70150089 + RSINE1 SINE B4 5 165 0 7 1554 238 50 50 0 chr1 127045349 127045389 -70150043 + (CCA)n Simple_repeat Simple_repeat 3 44 0 7 1554 516 200 56 8 chr1 127045475 127045601 -70149831 + MTEa LTR MaLR 243 374 -5 7 1554 526 264 120 105 chr1 127046456 127046856 -70148576 - MTD LTR MaLR 0 379 8 7 1554 804 205 10 93 chr1 127046928 127047122 -70148310 - B3A SINE B2 -37 179 2 7 1554 22 0 0 0 chr1 127047501 127047523 -70147909 + AT_rich Low_complexity Low_complexity 1 22 0 7 1554 1770 259 59 68 chr1 127047523 127048065 -70147367 - Lx6 LINE L1 -9 7451 6915 7 1554 573 55 0 0 chr1 127048065 127048138 -70147294 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 1554 486 221 5 0 chr1 127048160 127048257 -70147175 - Lx6 LINE L1 -792 6904 6795 7 1554 986 7 20 27 chr1 127048326 127048473 -70146959 + (GAGAA)n Simple_repeat Simple_repeat 5 150 0 7 1554 636 299 53 16 chr1 127048476 127048666 -70146766 + B4A SINE B4 20 216 -76 8 1554 303 297 17 43 chr1 127048668 127048784 -70146648 - ID_B1 SINE B4 -8 216 104 8 1554 1022 144 0 6 chr1 127048905 127049086 -70146346 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1554 547 295 88 47 chr1 127049737 127050011 -70145421 - B4A SINE B4 0 292 8 8 1554 182 86 86 0 chr1 127050282 127050317 -70145115 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 8 1554 512 256 22 14 chr1 127050324 127050478 -70144954 - MTE2a LTR MaLR -27 352 197 8 1554 975 277 5 5 chr1 127050481 127050695 -70144737 - B4 SINE B4 -77 215 2 8 1554 2116 163 53 5 chr1 127051232 127051626 -70143806 + MTC LTR MaLR 1 413 -8 8 1554 38 22 0 0 chr1 127051668 127051713 -70143719 + AT_rich Low_complexity Low_complexity 1 45 0 8 1554 892 239 94 47 chr1 127051797 127052052 -70143380 + B4 SINE B4 1 267 -25 8 1554 381 93 0 0 chr1 127052052 127052106 -70143326 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1554 306 0 0 0 chr1 127052106 127052139 -70143293 + (GA)n Simple_repeat Simple_repeat 2 35 0 9 1554 331 148 257 53 chr1 127052414 127052547 -70142885 + B3 SINE B2 2 160 -38 9 1554 213 178 0 0 chr1 127052636 127052681 -70142751 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 9 1554 296 323 67 40 chr1 127052683 127053012 -70142420 - MER20B DNA MER1_type -146 637 300 9 1554 279 0 0 0 chr1 127053015 127053046 -70142386 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1554 528 16 0 0 chr1 127053121 127053182 -70142250 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 9 1554 476 146 0 11 chr1 127053271 127053361 -70142071 + GA-rich Low_complexity Low_complexity 2 90 0 9 1554 583 262 160 49 chr1 127053432 127053519 -70141913 + RMER5 LTR ERV1 119 218 -316 9 1554 1906 61 0 24 chr1 127053519 127053772 -70141660 - L1Md_F2 LINE L1 0 6582 6336 9 1554 583 262 160 49 chr1 127053772 127054009 -70141423 + RMER5 LTR ERV1 219 478 -56 9 1554 221 302 34 34 chr1 127055467 127055556 -70139876 + MamSINE1 SINE tRNA 2 90 -200 1 1554 725 309 34 54 chr1 127055690 127055988 -70139444 + B4A SINE B4 1 292 0 1 1554 568 270 168 12 chr1 127056009 127056089 -70139343 + L1MD2 LINE L1 6049 6152 -207 1 1554 393 75 0 0 chr1 127056089 127056142 -70139290 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1554 568 270 168 12 chr1 127056142 127056305 -70139127 + L1MD2 LINE L1 6153 6329 -30 1 1554 718 230 130 13 chr1 127056475 127056713 -70138719 + B4 SINE B4 2 267 -25 1 1554 366 115 0 0 chr1 127056846 127056907 -70138525 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1554 396 40 0 0 chr1 127056907 127056957 -70138475 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1554 416 303 111 48 chr1 127057556 127057871 -70137561 + MLT1C LTR MaLR 6 340 -127 1 1554 550 209 14 63 chr1 127058029 127058125 -70137307 + B3A SINE B2 1 95 -103 1 1554 2004 189 19 8 chr1 127058125 127058503 -70136929 + RLTR14 LTR ERV1 1 382 0 1 1554 550 209 14 63 chr1 127058503 127058549 -70136883 + B3A SINE B2 96 136 -62 1 1554 21 36 0 0 chr1 127058621 127058649 -70136783 + AT_rich Low_complexity Low_complexity 1 28 0 1 1554 288 331 119 7 chr1 127059225 127059368 -70136064 - B4A SINE B4 -2 290 132 1 1554 286 258 30 70 chr1 127059749 127059849 -70135583 - B4A SINE B4 -194 98 3 1 1554 303 289 48 0 chr1 127060105 127060188 -70135244 - MTE2a LTR MaLR -98 281 195 1 1554 673 242 40 61 chr1 127061060 127061258 -70134174 + B3A SINE B2 5 198 0 1 1554 1001 192 19 114 chr1 127061518 127061789 -70133643 - RMER20B LTR ERVK -130 497 253 1 1554 25 51 0 0 chr1 127061815 127061854 -70133578 + AT_rich Low_complexity Low_complexity 1 39 0 1 1554 1356 193 33 43 chr1 127061856 127062159 -70133273 - RMER20B LTR ERVK -327 300 1 1 1554 362 330 45 17 chr1 127062159 127062338 -70133094 + L1MA9 LINE L1 5916 6099 -213 1 1554 259 281 24 24 chr1 127062371 127062455 -70132977 + L1MA9 LINE L1 6168 6251 -61 1 1554 705 318 79 4 chr1 127062456 127062721 -70132711 + Lx8 LINE L1 7047 7331 -142 1 1554 419 97 42 0 chr1 127062725 127062797 -70132635 + (ATGGTG)n Simple_repeat Simple_repeat 5 79 0 1 1554 1601 226 32 5 chr1 127063940 127064313 -70131119 + MTD LTR MaLR 34 416 -3 1 1554 333 308 101 14 chr1 127065309 127065457 -70129975 + Charlie1a DNA MER1_type 7 167 -1288 1 1554 180 0 0 0 chr1 127065803 127065823 -70129609 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1554 394 277 81 27 chr1 127065990 127066250 -70129182 + Charlie1a DNA MER1_type 930 1203 -252 1 1554 967 269 118 4 chr1 127066277 127066557 -70128875 + MTE2b LTR MaLR 1 312 -67 1 1554 439 181 74 28 chr1 127067003 127067111 -70128321 - Lx5 LINE L1 -7 7043 6931 1 1554 254 179 18 0 chr1 127067233 127067289 -70128143 + MTE2b LTR MaLR 315 371 -8 1 1554 379 294 24 42 chr1 127068147 127068314 -70127118 + RMER15 LTR ERVL 352 515 -60 1 1554 4326 55 36 16 chr1 127068523 127069110 -70126322 + L1Md_F2 LINE L1 5997 6582 0 1 1554 895 56 16 0 chr1 127069539 127069665 -70125767 + (GA)n Simple_repeat Simple_repeat 2 129 0 1 1554 257 51 0 25 chr1 127071067 127071107 -70124325 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 1554 461 243 0 0 chr1 127073632 127073743 -70121689 - RCHARR1 DNA MER1_type -357 617 507 1 1554 688 272 5 16 chr1 127074359 127074546 -70120886 + ID_B1 SINE B4 40 224 0 1 1554 359 341 27 117 chr1 127074690 127074989 -70120443 - B4A SINE B4 -20 272 1 1 1554 366 218 69 78 chr1 127075015 127075199 -70120233 - B3A SINE B2 0 216 7 1 1554 225 0 0 0 chr1 127075691 127075716 -70119716 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1554 279 0 0 0 chr1 127076038 127076069 -70119363 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1554 31394 88 11 1 chr1 127076127 127077945 -70117487 - L1_Mus1 LINE L1 0 6567 4738 1 1554 192 40 0 0 chr1 127077945 127077970 -70117462 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1554 31394 116 13 21 chr1 127077970 127082019 -70113413 - L1_Mus1 LINE L1 -1146 4737 725 1 1554 467 264 43 7 chr1 127082021 127082162 -70113270 - L1_Mus1 LINE L1 -5807 809 664 1 1554 465 270 6 94 chr1 127082324 127082504 -70112928 - L1VL1 LINE L1 -6022 400 237 1 1554 418 309 66 33 chr1 127082595 127082869 -70112563 - L1MA4 LINE L1 -201 6099 5817 1 1554 348 194 40 32 chr1 127082873 127082990 -70112442 - B1_Mur1 SINE Alu 0 149 1 1 1554 406 271 0 10 chr1 127083134 127083231 -70112201 - B4A SINE B4 -194 98 3 1 1554 281 211 52 78 chr1 127084174 127084251 -70111181 - B4A SINE B4 0 292 218 1 1554 228 86 0 0 chr1 127084253 127084288 -70111144 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1554 529 261 106 0 chr1 127084300 127084442 -70110990 - B3A SINE B2 -38 160 4 1 1554 548 278 8 0 chr1 127085323 127085449 -70109983 + RSINE1 SINE B4 2 128 -37 1 1554 345 47 0 0 chr1 127085486 127085529 -70109903 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1554 620 306 87 29 chr1 127085656 127085932 -70109500 + B4A SINE B4 1 292 0 1 1554 233 308 136 8 chr1 127086255 127086373 -70109059 + B4A SINE B4 137 269 -23 1 1554 2724 193 140 42 chr1 127086405 127087026 -70108406 + RMER1B Other Other 381 1062 -4 1 1554 1651 226 65 0 chr1 127087102 127087456 -70107976 + MTE2b LTR MaLR 1 377 -2 1 1554 1650 278 52 31 chr1 127087689 127088212 -70107220 + Lx8 LINE L1 6929 7462 -11 1 1554 426 316 35 39 chr1 127088211 127088465 -70106967 + Lx7 LINE L1 5615 5867 -1829 1 1554 36 40 0 0 chr1 127088852 127088902 -70106530 + AT_rich Low_complexity Low_complexity 1 50 0 1 1554 9038 10 0 0 chr1 127089308 127090605 -70104827 - L1Md_A LINE L1 0 6582 5286 1 1554 288 0 0 0 chr1 127090724 127090756 -70104676 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1554 297 226 0 0 chr1 127090784 127090868 -70104564 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1554 752 234 65 6 chr1 127090999 127091167 -70104265 - B3A SINE B2 -16 182 5 1 1554 328 258 31 10 chr1 127091310 127091408 -70104024 - RMER15 LTR ERVL -105 470 371 1 1554 567 311 13 35 chr1 127091416 127091643 -70103789 - Lx8 LINE L1 -248 7225 7004 1 1554 259 68 0 0 chr1 127091810 127091854 -70103578 - Lx LINE L1 0 6654 6611 1 1554 1810 263 98 21 chr1 127092258 127092817 -70102615 + Lx8 LINE L1 6817 7418 -55 1 1554 1222 260 13 66 chr1 127093958 127094337 -70101095 + ORR1E LTR MaLR 1 359 0 1 1554 468 51 0 0 chr1 127094712 127094771 -70100661 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1554 450 0 0 0 chr1 127094856 127094906 -70100526 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 1554 525 144 0 0 chr1 127094904 127095022 -70100410 + (TTC)n Simple_repeat Simple_repeat 3 120 0 1 1554 879 231 117 10 chr1 127095022 127095219 -70100213 - B4 SINE B4 -72 220 3 1 1554 580 301 11 23 chr1 127095334 127095511 -70099921 - B4A SINE B4 -117 175 1 1 1554 514 319 68 89 chr1 127096043 127096275 -70099157 + B4 SINE B4 5 233 -59 1 1554 1042 264 124 6 chr1 127096275 127096606 -70098826 + ORR1D2 LTR MaLR 1 370 0 1 1554 514 319 68 89 chr1 127096606 127096665 -70098767 + B4 SINE B4 234 290 -2 1 1554 306 274 49 0 chr1 127097117 127097219 -70098213 + ID_B1 SINE B4 18 124 -100 1 1554 21 0 0 0 chr1 127097296 127097317 -70098115 + AT_rich Low_complexity Low_complexity 1 21 0 1 1554 355 269 64 153 chr1 127097562 127097764 -70097668 - B3A SINE B2 -11 184 1 1 1554 474 246 0 9 chr1 127097787 127097902 -70097530 - L1MA4 LINE L1 -390 5910 5797 1 1554 324 70 0 0 chr1 127098433 127098476 -70096956 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1554 191 133 22 0 chr1 127098503 127098548 -70096884 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1554 604 260 44 44 chr1 127098604 127098645 -70096787 - B3A SINE B2 -16 182 149 1 1554 672 71 27 0 chr1 127098645 127098757 -70096675 + (TG)n Simple_repeat Simple_repeat 1 115 0 1 1554 604 260 44 44 chr1 127098757 127098896 -70096536 - B3A SINE B2 -50 148 2 1 1554 934 248 7 69 chr1 127098899 127099176 -70096256 + B4 SINE B4 32 291 -1 1 1554 375 282 108 13 chr1 127099281 127099439 -70095993 + B3 SINE B2 4 176 -40 1 1554 263 313 24 65 chr1 127099680 127099803 -70095629 - MER74B LTR ERVL -380 242 125 1 1554 514 219 11 124 chr1 127099832 127100009 -70095423 - RMER5 LTR ERV1 -8 526 370 1 1554 253 206 62 42 chr1 127100017 127100113 -70095319 - Lx9 LINE L1 -17 7627 7530 1 1554 378 0 0 0 chr1 127100113 127100155 -70095277 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1554 519 259 55 17 chr1 127100166 127100202 -70095230 - L1_Mm LINE L1 -2497 5498 5455 1 1554 5445 94 59 6 chr1 127100202 127100983 -70094449 - L1_Mus3 LINE L1 -4 6634 5813 1 1554 3232 113 6 2 chr1 127100983 127101462 -70093970 - L1_Mm LINE L1 -2541 5454 4944 1 1554 30200 87 15 3 chr1 127101557 127106437 -70088995 + L1Md_F LINE L1 346 5282 -601 1 1554 447 128 0 44 chr1 127106442 127106532 -70088900 + L1Md_F2 LINE L1 6497 6582 0 1 1554 926 181 59 47 chr1 127106535 127106790 -70088642 - RLTR24 LTR ERV1 -53 476 219 1 1554 1960 169 6 11 chr1 127106811 127107170 -70088262 + ORR1B1 LTR MaLR 38 394 0 1 1554 1051 148 6 0 chr1 127107170 127107345 -70088087 - RLTR24 LTR ERV1 -353 176 1 1 1554 287 262 158 46 chr1 127107353 127107505 -70087927 - Lx9 LINE L1 -251 7393 7225 1 1554 8062 91 3 4 chr1 127107544 127109191 -70086241 + L1_Mus3 LINE L1 4992 6638 0 1 1554 839 280 55 57 chr1 127109215 127109582 -70085850 - RMER5 LTR ERV1 -156 378 13 1 1554 795 252 97 41 chr1 127109872 127110126 -70085306 + RLTR20B3 LTR ERVK 208 470 -107 1 1554 579 15 0 0 chr1 127110126 127110194 -70085238 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1554 795 252 97 41 chr1 127110194 127110258 -70085174 + RLTR20B3 LTR ERVK 471 544 -33 1 1554 777 253 8 82 chr1 127110645 127110890 -70084542 - ORR1E LTR MaLR -65 294 68 1 1554 414 0 0 0 chr1 127111230 127111276 -70084156 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 1 1554 432 0 0 0 chr1 127111869 127111917 -70083515 + (CTTG)n Simple_repeat Simple_repeat 1 48 0 1 1554 226 244 12 35 chr1 127112069 127112154 -70083278 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 1 1554 614 310 38 33 chr1 127112154 127112364 -70083068 - B4A SINE B4 0 292 82 1 1554 582 176 13 7 chr1 127112374 127112523 -70082909 + (TG)n Simple_repeat Simple_repeat 1 150 0 1 1554 549 276 56 35 chr1 127112523 127112714 -70082718 - B3A SINE B2 -13 203 14 1 1554 467 219 10 10 chr1 127112725 127112822 -70082610 - B4A SINE B4 -195 97 1 1 1554 1129 244 125 30 chr1 127113253 127113620 -70081812 - MTD LTR MaLR 0 419 18 1 1554 582 279 94 0 chr1 127113798 127113999 -70081433 + B4 SINE B4 9 228 -64 1 1554 672 300 54 18 chr1 127114001 127114279 -70081153 + B4A SINE B4 3 290 -2 2 1554 360 0 0 0 chr1 127114578 127114618 -70080814 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1554 324 0 0 0 chr1 127114619 127114655 -70080777 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1554 346 331 23 38 chr1 127114685 127114817 -70080615 - B1_Mus2 SINE Alu -17 130 1 2 1554 717 299 9 65 chr1 127114699 127114818 -70080614 - B4 SINE B4 -87 205 87 2 1554 222 62 0 0 chr1 127114818 127114850 -70080582 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1554 717 299 9 65 chr1 127114850 127114945 -70080487 - B4 SINE B4 -206 86 3 2 1554 498 304 51 30 chr1 127115180 127115455 -70079977 + B4 SINE B4 2 292 0 2 1554 324 0 0 0 chr1 127115492 127115528 -70079904 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1554 502 257 149 23 chr1 127115550 127115765 -70079667 - RMER5 LTR ERV1 0 534 293 2 1554 1605 232 35 0 chr1 127116233 127116599 -70078833 - MTEa LTR MaLR 0 379 1 2 1554 267 307 0 33 chr1 127117038 127117129 -70078303 + GA-rich Low_complexity Low_complexity 4 91 0 2 1554 2784 97 52 7 chr1 127117466 127117891 -70077541 + Lx LINE L1 6211 6654 0 2 1554 480 257 0 9 chr1 127117915 127118025 -70077407 + RSINE1 SINE B4 3 111 -54 2 1554 252 0 0 0 chr1 127118025 127118053 -70077379 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1554 234 0 0 0 chr1 127118053 127118078 -70077354 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1554 441 0 0 0 chr1 127118078 127118126 -70077306 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1554 420 224 0 12 chr1 127118260 127118346 -70077086 + B4A SINE B4 6 90 -202 2 1554 299 343 0 19 chr1 127118399 127118503 -70076929 + B4A SINE B4 189 290 -2 2 1554 342 0 0 0 chr1 127118511 127118549 -70076883 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1554 303 198 26 40 chr1 127118759 127118852 -70076580 - MIRc SINE MIR -40 168 80 2 1554 399 254 171 55 chr1 127118939 127119085 -70076347 + B4A SINE B4 122 284 -8 2 1554 363 23 0 0 chr1 127119102 127119146 -70076286 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1554 773 159 27 60 chr1 127119399 127119609 -70075823 - RMER1B Other Other -3 1063 809 2 1554 7082 102 5 12 chr1 127120569 127121686 -70073746 - L1_Mus4 LINE L1 -426 6210 5093 2 1554 3526 48 11 0 chr1 127121686 127122121 -70073311 - L1_Mus1 LINE L1 0 6567 6128 2 1554 7082 126 6 16 chr1 127122121 127122138 -70073294 - L1_Mus4 LINE L1 -791 5092 5082 2 1554 3209 48 10 0 chr1 127122138 127122530 -70072902 + MTA_Mm LTR MaLR 1 396 0 2 1554 8534 44 57 0 chr1 127122530 127123569 -70071863 + MTA_Mm-int LTR MaLR 1 1098 0 2 1554 3261 48 8 0 chr1 127123569 127123962 -70071470 + MTA_Mm LTR MaLR 1 396 0 2 1554 7082 126 6 16 chr1 127123962 127124250 -70071182 - L1_Mus4 LINE L1 -802 5081 4796 2 1554 28 0 0 0 chr1 127124362 127124390 -70071042 + AT_rich Low_complexity Low_complexity 1 28 0 2 1554 329 272 32 21 chr1 127124889 127124983 -70070449 + RSINE1 SINE B4 33 127 -38 2 1554 388 234 135 0 chr1 127125618 127125729 -70069703 - ID_B1 SINE B4 -7 217 92 2 1554 546 194 195 27 chr1 127125980 127126165 -70069267 + B3 SINE B2 1 216 0 2 1554 252 273 0 0 chr1 127126189 127126244 -70069188 + MLT1D LTR MaLR 32 86 -419 2 1554 1161 222 139 15 chr1 127126246 127126583 -70068849 - MTEa LTR MaLR 0 379 1 2 1554 242 326 69 39 chr1 127126630 127126863 -70068569 + MLT1D LTR MaLR 118 357 -148 2 1554 517 248 0 0 chr1 127126924 127127033 -70068399 - B4A SINE B4 -2 290 182 2 1554 353 272 31 23 chr1 127127161 127127289 -70068143 + MLT1D LTR MaLR 377 505 0 2 1554 749 256 52 5 chr1 127127839 127128051 -70067381 + ID_B1 SINE B4 1 222 -2 2 1554 336 24 0 0 chr1 127128168 127128209 -70067223 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1554 300 273 57 0 chr1 127128560 127128648 -70066784 - Lx8 LINE L1 -1571 5902 5810 2 1554 4216 215 91 56 chr1 127128671 127129086 -70066346 + Lx9 LINE L1 6327 6753 -891 2 1554 1175 57 0 0 chr1 127129086 127129227 -70066205 + B1_Mm SINE Alu 2 142 -5 2 1554 414 0 0 0 chr1 127129228 127129274 -70066158 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1554 4216 215 91 56 chr1 127129274 127129957 -70065475 + Lx9 LINE L1 6754 7465 -179 2 1554 769 319 79 89 chr1 127129973 127130592 -70064840 - RLTR18 LTR ERVK 0 616 4 2 1554 620 180 58 0 chr1 127130615 127130754 -70064678 + Lx9 LINE L1 7480 7626 -18 2 1554 706 143 87 36 chr1 127130800 127130833 -70064599 + Lx7 LINE L1 7217 7249 -447 2 1554 2304 87 27 12 chr1 127130833 127131170 -70064262 + L1Md_F2 LINE L1 6241 6582 0 2 1554 706 143 87 36 chr1 127131170 127131274 -70064158 + Lx7 LINE L1 7250 7361 -335 2 1554 207 0 0 0 chr1 127131288 127131311 -70064121 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1554 690 289 6 0 chr1 127131465 127131621 -70063811 + RSINE1 SINE B4 7 163 -2 2 1554 599 275 56 70 chr1 127132023 127132449 -70062983 + Lx9 LINE L1 7225 7644 0 2 1554 254 200 16 16 chr1 127132527 127132588 -70062844 + ID2 SINE ID 11 71 -12 2 1554 31 68 0 0 chr1 127132649 127132708 -70062724 + AT_rich Low_complexity Low_complexity 1 59 0 2 1554 622 98 38 55 chr1 127132810 127132993 -70062439 + (TGG)n Simple_repeat Simple_repeat 1 180 0 2 1554 246 81 0 0 chr1 127133029 127133066 -70062366 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2 1554 368 252 18 66 chr1 127133066 127133232 -70062200 - HAL1-2a_MD LINE L1 -524 2500 2343 2 1554 213 277 31 0 chr1 127133232 127133297 -70062135 + (TGG)n Simple_repeat Simple_repeat 1 67 0 2 1554 26 50 0 0 chr1 127134135 127134175 -70061257 + AT_rich Low_complexity Low_complexity 1 40 0 2 1554 297 240 0 0 chr1 127134220 127134295 -70061137 + GA-rich Low_complexity Low_complexity 2 76 0 2 1554 757 305 36 55 chr1 127134362 127134636 -70060796 + B4A SINE B4 10 278 -14 2 1554 318 87 0 0 chr1 127134643 127134689 -70060743 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1554 230 214 33 11 chr1 127134939 127135029 -70060403 + CT-rich Low_complexity Low_complexity 1 92 0 2 1554 458 299 11 33 chr1 127135392 127135575 -70059857 + GA-rich Low_complexity Low_complexity 1 179 0 2 1554 293 353 29 14 chr1 127135640 127135778 -70059654 + L4 LINE RTE 1300 1439 -590 2 1554 684 264 5 32 chr1 127136504 127136692 -70058740 + B3A SINE B2 10 192 -6 2 1554 1089 304 91 17 chr1 127136852 127137261 -70058171 + Lx7 LINE L1 6148 6586 -1110 2 1554 285 156 15 59 chr1 127137268 127137336 -70058096 - RLTR31_Mur LTR ERVK 0 553 489 2 1554 747 277 36 52 chr1 127137540 127137882 -70057550 - RLTR17 LTR ERVK -266 426 32 2 1554 2447 272 24 26 chr1 127137892 127138614 -70056818 + Lx7 LINE L1 6581 7300 -396 2 1554 387 0 0 0 chr1 127138619 127138662 -70056770 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1554 342 0 0 0 chr1 127138662 127138699 -70056733 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1554 809 243 156 35 chr1 127139417 127139732 -70055700 + MTE2a LTR MaLR 24 376 -3 2 1554 612 0 0 0 chr1 127139732 127139800 -70055632 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1555 282 233 0 27 chr1 127139894 127139969 -70055463 + (ATG)n Simple_repeat Simple_repeat 3 75 0 2 1555 249 296 12 0 chr1 127140673 127140754 -70054678 - MLT1D LTR MaLR -41 464 383 2 1555 2862 21 2 213 chr1 127140816 127141310 -70054122 + RLTR10 LTR ERVK 1 390 0 2 1555 6275 42 77 112 chr1 127141320 127142302 -70053130 + RLTR10-int LTR ERVK 41 988 -999 2 1555 9106 12 0 1 chr1 127142380 127143376 -70052056 + RLTR10-int LTR ERVK 990 1984 -3 2 1555 2862 21 2 213 chr1 127143378 127143872 -70051560 + RLTR10 LTR ERVK 1 390 0 2 1555 240 310 140 11 chr1 127143901 127144087 -70051345 - MLT1D LTR MaLR -287 218 9 2 1555 675 251 61 42 chr1 127144372 127144584 -70050848 + B3 SINE B2 1 216 0 2 1555 338 328 30 7 chr1 127144646 127144781 -70050651 + Lx8 LINE L1 7156 7293 -180 2 1555 330 193 0 0 chr1 127145019 127145076 -70050356 + PB1D10 SINE Alu 56 112 -5 2 1555 234 0 0 0 chr1 127145104 127145130 -70050302 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1555 3797 101 2 2 chr1 127145336 127145852 -70049580 + Lx2 LINE L1 6130 6645 -352 2 1555 1214 135 62 0 chr1 127145850 127146058 -70049374 + Lx2 LINE L1 6775 6995 -2 2 1555 1082 210 205 80 chr1 127146134 127146319 -70049113 + ORR1C1 LTR MaLR 1 159 -219 2 1555 518 0 16 0 chr1 127146319 127146381 -70049051 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1555 1082 210 205 80 chr1 127146381 127146531 -70048901 + ORR1C1 LTR MaLR 160 377 -1 2 1555 414 57 0 0 chr1 127146570 127146623 -70048809 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1555 418 330 9 0 chr1 127146623 127146732 -70048700 - B4 SINE B4 -99 193 84 2 1555 466 178 0 22 chr1 127146752 127146844 -70048588 + B3A SINE B2 5 94 -104 2 1555 28 0 0 0 chr1 127146895 127146923 -70048509 + AT_rich Low_complexity Low_complexity 1 28 0 2 1555 390 299 28 35 chr1 127147448 127147590 -70047842 + RSINE1 SINE B4 2 142 -23 2 1555 334 161 0 21 chr1 127147599 127147694 -70047738 + GA-rich Low_complexity Low_complexity 4 96 0 2 1555 396 0 0 0 chr1 127148059 127148103 -70047329 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1555 742 250 49 7 chr1 127148177 127148375 -70047057 + Lx8 LINE L1 6871 7186 -458 2 1555 1168 87 34 28 chr1 127148375 127148552 -70046880 + B2_Mm1t SINE B2 2 179 -14 2 1555 3496 30 2 0 chr1 127148646 127149053 -70046379 - L1Md_F2 LINE L1 -1 6581 6174 2 1555 1033 274 89 37 chr1 127149055 127149491 -70045941 + Lx8 LINE L1 7011 7469 -4 2 1555 873 254 68 32 chr1 127150367 127150648 -70044784 - B4A SINE B4 0 292 2 2 1555 351 236 0 36 chr1 127150749 127150916 -70044516 + GA-rich Low_complexity Low_complexity 3 163 0 2 1555 402 203 210 70 chr1 127151257 127151400 -70044032 - RSINE1 SINE B4 0 165 3 2 1555 311 58 0 80 chr1 127151845 127151920 -70043512 + (TTTTTG)n Simple_repeat Simple_repeat 1 69 0 2 1555 1040 175 90 0 chr1 127151920 127152120 -70043312 - ID_B1 SINE B4 -2 222 5 2 1555 288 188 47 0 chr1 127152326 127152390 -70043042 + B4 SINE B4 6 72 -220 2 1555 428 286 66 30 chr1 127152454 127152620 -70042812 + B4 SINE B4 70 241 -51 2 1555 607 228 17 35 chr1 127152607 127152780 -70042652 + MTEa LTR MaLR 208 377 -2 2 1555 633 47 0 0 chr1 127152969 127153054 -70042378 + (CCTG)n Simple_repeat Simple_repeat 2 86 0 2 1555 198 224 0 0 chr1 127153056 127153105 -70042327 + CT-rich Low_complexity Low_complexity 1 49 0 2 1555 207 254 0 0 chr1 127153110 127153173 -70042259 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1555 180 0 0 0 chr1 127153258 127153278 -70042154 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1555 243 125 0 0 chr1 127153295 127153335 -70042097 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2 1555 518 290 14 7 chr1 127153338 127153484 -70041948 - RSINE1 SINE B4 -17 148 2 2 1555 907 257 25 16 chr1 127153484 127153713 -70041719 - B4 SINE B4 -61 231 1 2 1555 186 171 43 0 chr1 127154280 127154350 -70041082 + (CATAC)n Simple_repeat Simple_repeat 3 75 0 2 1555 311 207 11 54 chr1 127154387 127154571 -70040861 + (CATAC)n Simple_repeat Simple_repeat 4 179 0 2 1555 367 206 6 49 chr1 127154582 127154745 -70040687 + (CACAC)n Simple_repeat Simple_repeat 4 159 0 3 1555 3538 18 2 0 chr1 127154818 127155213 -70040219 - MTA_Mm LTR MaLR 0 396 1 3 1555 920 248 74 11 chr1 127155975 127156244 -70039188 - B4 SINE B4 -6 286 1 3 1555 1125 65 0 7 chr1 127157026 127157166 -70038266 + B1_Mus1 SINE Alu 1 139 -9 3 1555 456 370 11 6 chr1 127157508 127157682 -70037750 + Lx8 LINE L1 7029 7203 -270 3 1555 1747 118 99 23 chr1 127157720 127158024 -70037408 + ORR1A4 LTR MaLR 1 327 -2 3 1555 1481 63 21 0 chr1 127158344 127158535 -70036897 + B2_Mm2 SINE B2 1 195 0 3 1555 946 301 101 9 chr1 127159042 127159387 -70036045 + Lx8 LINE L1 6896 7272 -201 3 1555 378 0 0 0 chr1 127159425 127159467 -70035965 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1555 210 224 0 0 chr1 127160344 127160393 -70035039 + G-rich Low_complexity Low_complexity 4 52 0 3 1555 478 295 117 25 chr1 127160603 127160925 -70034507 - MTD LTR MaLR -39 340 17 3 1555 327 49 0 0 chr1 127161035 127161076 -70034356 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1555 1589 88 13 13 chr1 127161163 127161392 -70034040 - L1_Mus1 LINE L1 0 6567 6339 3 1555 492 298 0 0 chr1 127161610 127161731 -70033701 + RSINE1 SINE B4 2 122 -43 3 1555 210 71 0 0 chr1 127161753 127161781 -70033651 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1555 267 31 0 0 chr1 127161812 127161844 -70033588 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1555 2563 45 10 0 chr1 127161865 127162176 -70033256 + L1Md_A LINE L1 6269 6582 0 3 1555 589 183 7 51 chr1 127162242 127162296 -70033136 - MTD LTR MaLR -15 404 355 3 1555 2561 136 8 13 chr1 127162296 127162691 -70032741 + ORR1B1 LTR MaLR 1 393 -1 3 1555 589 230 127 31 chr1 127162691 127162953 -70032479 - MTD LTR MaLR -65 354 18 3 1555 576 272 117 24 chr1 127163670 127163919 -70031513 + B4A SINE B4 3 274 -18 3 1555 396 0 0 0 chr1 127163948 127163992 -70031440 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1555 600 229 0 0 chr1 127164030 127164161 -70031271 - MLT1A1 LTR MaLR 0 408 278 3 1555 603 154 0 0 chr1 127164231 127164367 -70031065 + CT-rich Low_complexity Low_complexity 1 136 0 3 1555 33 56 0 0 chr1 127165144 127165198 -70030234 + AT_rich Low_complexity Low_complexity 1 54 0 3 1555 342 0 0 0 chr1 127165301 127165339 -70030093 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1555 957 273 49 25 chr1 127165366 127165693 -70029739 + Lx8 LINE L1 7139 7473 0 3 1555 1149 202 125 9 chr1 127165882 127166217 -70029215 + RMER20A LTR ERVK 1 374 -142 3 1555 540 193 110 0 chr1 127166977 127167039 -70028393 - B4 SINE B4 -130 162 92 3 1555 228 67 0 0 chr1 127167039 127167069 -70028363 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1555 540 193 110 0 chr1 127167069 127167151 -70028281 - B4 SINE B4 -201 91 4 3 1555 240 214 34 51 chr1 127167394 127167453 -70027979 - Lx9 LINE L1 -330 7314 7257 3 1555 456 171 140 19 chr1 127167470 127167577 -70027855 + Lx9 LINE L1 6929 7048 -596 3 1555 183 80 0 0 chr1 127168434 127168459 -70026973 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3 1555 974 99 13 0 chr1 127168460 127168612 -70026820 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 3 1555 180 0 0 0 chr1 127168741 127168761 -70026671 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1555 1151 75 7 0 chr1 127168764 127168911 -70026521 - B1_Mus1 SINE Alu 0 148 1 3 1555 825 224 81 101 chr1 127168938 127169114 -70026318 - ORR1E LTR MaLR -6 353 172 3 1555 522 158 225 65 chr1 127169114 127169283 -70026149 + B3A SINE B2 3 198 0 3 1555 825 224 81 101 chr1 127169283 127169463 -70025969 - ORR1E LTR MaLR -188 171 4 3 1555 988 252 57 25 chr1 127170183 127170549 -70024883 - RMER17C LTR ERVK -32 378 1 3 1555 507 247 4 4 chr1 127170572 127170849 -70024583 + (TG)n Simple_repeat Simple_repeat 1 277 0 3 1555 675 265 67 75 chr1 127170924 127171177 -70024255 + B4 SINE B4 2 252 -40 3 1555 346 75 0 93 chr1 127171249 127171367 -70024065 + (GTTTG)n Simple_repeat Simple_repeat 3 109 0 3 1555 180 0 0 0 chr1 127172137 127172157 -70023275 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 1555 951 270 57 21 chr1 127172386 127172666 -70022766 + B4A SINE B4 1 290 -2 3 1555 13319 54 3 30 chr1 127172720 127175217 -70020215 - L1Md_F2 LINE L1 -12 6570 4157 3 1555 3885 130 29 7 chr1 127175629 127176242 -70019190 + Lx4A LINE L1 6432 7058 0 3 1555 972 222 34 29 chr1 127176257 127176466 -70018966 + B4 SINE B4 83 292 0 3 1555 2246 147 153 2 chr1 127176503 127176934 -70018498 + RLTR17 LTR ERVK 197 692 0 3 1555 9041 190 55 48 chr1 127176934 127179419 -70016013 + RMER3D-int LTR ERVK 1 2842 0 3 1555 270 157 0 0 chr1 127179419 127179470 -70015962 + RLTR17 LTR ERVK 1 51 -641 3 1555 444 37 0 0 chr1 127179472 127179526 -70015906 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1555 1573 189 11 85 chr1 127179528 127179847 -70015585 + RLTR17 LTR ERVK 42 335 -357 3 1555 2202 88 19 12 chr1 127179847 127180170 -70015262 - L1_Mus3 LINE L1 0 6638 6314 3 1555 1573 189 11 85 chr1 127180170 127180203 -70015229 + RLTR17 LTR ERVK 336 368 -324 3 1555 288 0 0 0 chr1 127180218 127180250 -70015182 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 1555 1192 55 0 7 chr1 127180331 127180479 -70014953 + B1_Mus2 SINE Alu 1 147 0 3 1555 304 326 11 0 chr1 127180919 127181014 -70014418 - RMER15 LTR ERVL -109 466 371 3 1555 801 273 101 19 chr1 127181023 127181166 -70014266 - Lx8 LINE L1 -251 7222 7069 3 1555 1841 165 6 12 chr1 127181166 127181497 -70013935 - ORR1A4 LTR MaLR 0 329 1 3 1555 801 273 101 19 chr1 127181497 127181670 -70013762 - Lx8 LINE L1 -405 7068 6881 3 1555 711 243 71 6 chr1 127181973 127182155 -70013277 + B3A SINE B2 5 198 0 3 1555 21 36 0 0 chr1 127182162 127182190 -70013242 + AT_rich Low_complexity Low_complexity 1 28 0 3 1555 192 115 36 55 chr1 127182732 127182787 -70012645 + GA-rich Low_complexity Low_complexity 4 57 0 3 1555 457 323 59 47 chr1 127183399 127183568 -70011864 + B4 SINE B4 122 292 0 3 1555 438 317 54 27 chr1 127183637 127183822 -70011610 + MLT1B LTR MaLR 161 350 -40 3 1555 962 78 0 100 chr1 127184579 127184749 -70010683 + L1Md_F2 LINE L1 6430 6582 0 3 1555 540 306 83 0 chr1 127184867 127185024 -70010408 - B4 SINE B4 -18 274 105 3 1555 594 278 124 35 chr1 127185477 127185700 -70009732 + Lx8 LINE L1 7193 7438 -35 3 1555 237 33 0 0 chr1 127185700 127185730 -70009702 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1555 594 278 124 35 chr1 127185730 127185763 -70009669 + Lx8 LINE L1 7439 7471 -2 3 1555 498 303 0 70 chr1 127185773 127185915 -70009517 + B1_Mur1 SINE Alu 1 132 -17 3 1555 341 22 22 0 chr1 127185923 127185969 -70009463 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1555 294 227 80 26 chr1 127185972 127186085 -70009347 + Lx8 LINE L1 7353 7471 -2 3 1555 663 220 49 7 chr1 127186353 127186495 -70008937 + RSINE1 SINE B4 11 158 -7 3 1555 274 316 54 81 chr1 127186495 127186537 -70008895 + B3A SINE B2 10 188 -10 3 1555 1018 264 27 19 chr1 127187184 127187447 -70007985 + ORR1E LTR MaLR 94 358 -1 3 1555 291 242 47 135 chr1 127187478 127187647 -70007785 + B4A SINE B4 73 247 -45 3 1555 342 0 0 0 chr1 127187647 127187685 -70007747 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1555 1076 60 0 0 chr1 127187685 127187818 -70007614 - B1_Mus2 SINE Alu -11 136 4 3 1555 291 226 0 125 chr1 127187818 127187885 -70007547 + RSINE1 SINE B4 104 160 -5 3 1555 2063 123 7 87 chr1 127188158 127188604 -70006828 + RMER17C LTR ERVK 1 410 0 3 1555 237 65 0 0 chr1 127189064 127189095 -70006337 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1555 339 301 36 51 chr1 127189119 127189142 -70006290 + L1_Mus2 LINE L1 5131 5154 -992 3 1555 607 270 148 70 chr1 127189142 127189413 -70006019 - B4 SINE B4 0 292 1 3 1555 7851 82 2 1 chr1 127189413 127190856 -70004576 + L1_Mus2 LINE L1 5152 6565 -1 3 1555 197 303 91 0 chr1 127190924 127191023 -70004409 + MIRc SINE MIR 50 157 -111 3 1555 1256 233 75 19 chr1 127191049 127191445 -70003987 + MTD LTR MaLR 1 405 -14 3 1555 1342 241 40 32 chr1 127191449 127191822 -70003610 - MTE2a LTR MaLR -3 376 1 3 1555 769 268 38 24 chr1 127191972 127192182 -70003250 + ID_B1 SINE B4 8 220 -4 3 1555 513 0 0 0 chr1 127192655 127192712 -70002720 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1555 609 129 0 0 chr1 127193181 127193297 -70002135 + (TC)n Simple_repeat Simple_repeat 1 116 0 3 1555 459 0 0 0 chr1 127193297 127193348 -70002084 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1555 700 271 11 119 chr1 127193407 127193603 -70001829 - B4A SINE B4 0 292 124 3 1555 2196 140 30 46 chr1 127193603 127193976 -70001456 + ORR1B2 LTR MaLR 1 367 0 3 1555 700 271 11 119 chr1 127193976 127194056 -70001376 - B4A SINE B4 -169 123 46 3 1555 423 0 0 0 chr1 127196016 127196063 -69999369 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1555 423 0 0 0 chr1 127196063 127196109 -69999323 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1555 791 281 69 25 chr1 127196187 127196464 -69998968 - B4 SINE B4 -3 289 1 3 1555 571 269 55 0 chr1 127196805 127196950 -69998482 + ID_B1 SINE B4 19 171 -53 3 1555 789 170 11 11 chr1 127196975 127197072 -69998360 + polypurine Low_complexity Low_complexity 3 99 0 3 1555 1347 72 0 0 chr1 127197072 127197252 -69998180 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1555 789 170 11 11 chr1 127197252 127197332 -69998100 + polypurine Low_complexity Low_complexity 100 179 0 3 1555 213 211 0 0 chr1 127197355 127197407 -69998025 + GA-rich Low_complexity Low_complexity 2 53 0 3 1555 438 255 0 30 chr1 127197409 127197510 -69997922 + MTE2b LTR MaLR 1 98 -281 3 1555 338 347 75 58 chr1 127197510 127197687 -69997745 + MT2A LTR ERVL 1 283 -250 3 1555 299 310 11 0 chr1 127197680 127197767 -69997665 + MLT1A LTR MaLR 287 374 0 3 1555 546 79 0 0 chr1 127197867 127197943 -69997489 + (TGAG)n Simple_repeat Simple_repeat 4 79 0 3 1555 480 48 0 0 chr1 127198656 127198719 -69996713 + (TGG)n Simple_repeat Simple_repeat 2 64 0 3 1555 438 303 22 33 chr1 127199054 127199238 -69996194 - L1_Mur3 LINE L1 -3578 2302 2121 3 1555 257 301 32 21 chr1 127199302 127199397 -69996035 + RMER15 LTR ERVL 371 466 -109 3 1555 612 275 31 18 chr1 127199441 127199604 -69995828 - RSINE1 SINE B4 0 165 1 4 1555 259 354 45 22 chr1 127200274 127200453 -69994979 + L1M1 LINE L1 5723 5905 -395 4 1555 21 57 0 0 chr1 127200670 127200705 -69994727 + AT_rich Low_complexity Low_complexity 1 35 0 4 1555 865 243 6 6 chr1 127200736 127200918 -69994514 - B3A SINE B2 -16 182 1 4 1555 447 19 0 0 chr1 127201147 127201199 -69994233 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 4 1555 348 318 57 23 chr1 127201212 127201389 -69994043 + MLT1C LTR MaLR 227 409 -58 4 1555 410 319 83 58 chr1 127201801 127202077 -69993355 - B4A SINE B4 0 292 10 4 1555 997 274 110 31 chr1 127202435 127202890 -69992542 + L1MA5 LINE L1 5791 6281 -19 4 1555 535 328 86 26 chr1 127202920 127203189 -69992243 + B4 SINE B4 8 292 0 4 1555 423 202 61 1 chr1 127203224 127203323 -69992109 + B4A SINE B4 1 108 -57 4 1555 233 244 0 128 chr1 127203363 127203457 -69991975 + B4A SINE B4 211 292 0 4 1555 222 207 0 0 chr1 127204161 127204219 -69991213 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1555 5593 28 16 0 chr1 127204305 127204950 -69990482 - L1Md_F3 LINE L1 -14 6570 5916 4 1555 467 319 77 42 chr1 127205004 127205263 -69990169 - Lx8 LINE L1 -20 7453 7186 4 1555 1025 234 55 71 chr1 127205268 127205515 -69989917 - RMER17C LTR ERVK -34 376 141 4 1555 213 39 0 0 chr1 127205515 127205541 -69989891 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 4 1555 1025 234 55 71 chr1 127205541 127205675 -69989757 - RMER17C LTR ERVK -270 140 2 4 1555 1171 299 84 21 chr1 127205675 127206058 -69989374 - Lx8 LINE L1 -285 7188 6782 4 1555 2153 113 78 6 chr1 127206058 127206415 -69989017 + ORR1B1 LTR MaLR 1 383 -11 4 1555 474 193 64 0 chr1 127206464 127206573 -69988859 - MER20 DNA MER1_type -44 175 60 4 1555 615 246 0 0 chr1 127206792 127206918 -69988514 + Lx8 LINE L1 6588 6713 -760 4 1555 1035 179 0 0 chr1 127206912 127207080 -69988352 - Lx4A LINE L1 -777 6281 6114 4 1555 548 272 0 0 chr1 127207118 127207243 -69988189 + B1F2 SINE Alu 23 147 -2 4 1555 527 222 67 40 chr1 127207478 127207668 -69987764 + L1MB2 LINE L1 5790 5996 -295 4 1555 1313 232 66 12 chr1 127207711 127208043 -69987389 + MTEa LTR MaLR 17 366 -13 4 1555 330 168 229 42 chr1 127208056 127208174 -69987258 + L1MB2 LINE L1 6023 6162 -9 4 1555 688 241 7 0 chr1 127208825 127208966 -69986466 + B3A SINE B2 1 142 -56 4 1555 1568 83 4 108 chr1 127208972 127209261 -69986171 - L1_Mus2 LINE L1 0 6566 6328 4 1555 270 73 0 0 chr1 127209310 127209351 -69986081 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1555 33 0 0 0 chr1 127209352 127209385 -69986047 + AT_rich Low_complexity Low_complexity 1 33 0 4 1555 274 292 45 71 chr1 127210193 127210348 -69985084 - MER74A LTR ERVL -137 421 271 4 1555 633 325 20 20 chr1 127210731 127210985 -69984447 - MER74A LTR ERVL -293 265 12 4 1555 343 329 13 70 chr1 127211851 127212008 -69983424 + RSINE1 SINE B4 3 150 -15 4 1555 603 289 93 93 chr1 127212080 127212349 -69983083 + RMER13A LTR ERVK 21 278 -582 4 1555 2099 135 9 44 chr1 127212349 127212690 -69982742 + ORR1A4 LTR MaLR 1 329 0 4 1555 603 316 87 86 chr1 127212690 127213059 -69982373 + RMER13A LTR ERVK 279 681 -227 4 1555 2058 128 44 41 chr1 127213340 127213706 -69981726 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1555 58092 18 5 6 chr1 127213706 127220183 -69975249 + IAPEz-int LTR ERVK 8 6481 0 4 1555 2072 125 44 41 chr1 127220183 127220549 -69974883 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1555 431 279 9 18 chr1 127221164 127221277 -69974155 - B4 SINE B4 -39 253 142 4 1555 393 261 34 0 chr1 127221427 127221515 -69973917 + ID_B1 SINE B4 1 91 -133 4 1555 1112 147 16 0 chr1 127221516 127221706 -69973726 - MTC LTR MaLR -120 301 109 4 1555 471 118 0 0 chr1 127221713 127221781 -69973651 + tRNA-Gly-GGA tRNA tRNA 5 72 -3 4 1555 799 164 0 41 chr1 127221784 127221930 -69973502 + B1_Mur3 SINE Alu 10 149 0 4 1555 777 138 26 7 chr1 127221930 127222083 -69973349 + GA-rich Low_complexity Low_complexity 1 156 0 4 1555 615 176 8 8 chr1 127222084 127222204 -69973228 - MTC LTR MaLR -301 120 1 4 1555 876 272 92 5 chr1 127222263 127222470 -69972962 + B4A SINE B4 2 226 -66 4 1555 538 275 15 30 chr1 127222485 127222620 -69972812 + RSINE1 SINE B4 11 143 -22 4 1555 306 0 0 0 chr1 127222621 127222655 -69972777 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1555 229 350 87 0 chr1 127222833 127222936 -69972496 + L2b LINE L2 3260 3371 -4 4 1555 1074 308 40 37 chr1 127223532 127223936 -69971496 + MTD LTR MaLR 1 405 -14 4 1555 218 275 11 91 chr1 127223984 127224024 -69971408 + ID SINE ID 2 41 -183 4 1555 945 285 97 14 chr1 127224024 127224373 -69971059 - MTE2b LTR MaLR -1 378 1 4 1555 218 275 11 91 chr1 127224373 127224420 -69971012 + ID SINE ID 42 82 -142 4 1555 510 100 220 0 chr1 127226211 127226311 -69969121 - Lx9 LINE L1 -7 7637 7516 4 1555 465 198 0 0 chr1 127227618 127227719 -69967713 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 1555 636 170 36 0 chr1 127230113 127230225 -69965207 + RSINE1 SINE B4 12 127 -38 4 1555 180 77 0 0 chr1 127230663 127230689 -69964743 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1555 324 0 0 0 chr1 127230689 127230725 -69964707 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1555 827 251 37 17 chr1 127230788 127231060 -69964372 + MT2A LTR ERVL 259 533 0 4 1555 318 256 88 11 chr1 127231284 127231375 -69964057 + ID_B1 SINE B4 127 224 0 4 1555 591 53 0 0 chr1 127231538 127231613 -69963819 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1555 366 74 0 0 chr1 127231624 127231678 -69963754 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1555 843 263 29 5 chr1 127232067 127232277 -69963155 + B3 SINE B2 2 216 0 4 1555 735 219 69 53 chr1 127232292 127232480 -69962952 - B3A SINE B2 0 198 8 4 1555 259 360 96 48 chr1 127232721 127232831 -69962601 - MT2A LTR ERVL -270 263 1 4 1555 472 267 43 43 chr1 127232831 127232972 -69962460 - MTEa LTR MaLR -238 141 1 4 1555 732 273 0 0 chr1 127233358 127233512 -69961920 - B3A SINE B2 -44 154 1 4 1555 436 266 208 7 chr1 127234620 127234764 -69960668 - B4A SINE B4 -49 243 71 4 1555 568 163 0 0 chr1 127235066 127235158 -69960274 + ORR1A4 LTR MaLR 1 92 -302 4 1555 676 66 0 11 chr1 127235161 127235253 -69960179 + ORR1A4 LTR MaLR 239 329 0 4 1555 1186 223 54 21 chr1 127235281 127235561 -69959871 + B4A SINE B4 4 292 0 4 1555 1204 170 274 20 chr1 127236180 127236290 -69959142 + ORR1C2 LTR MaLR 1 158 -226 4 1555 459 0 0 0 chr1 127236290 127236341 -69959091 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1555 345 24 0 0 chr1 127236341 127236382 -69959050 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1555 1204 170 274 20 chr1 127236382 127236576 -69958856 + ORR1C2 LTR MaLR 159 383 -1 4 1555 941 224 12 128 chr1 127236608 127236763 -69958669 + ID_B1 SINE B4 2 148 -76 4 1555 552 311 18 18 chr1 127236763 127236927 -69958505 + RSINE1 SINE B4 2 165 0 4 1555 941 224 12 128 chr1 127236927 127236938 -69958494 + ID_B1 SINE B4 149 149 -75 4 1555 444 37 0 0 chr1 127236938 127236992 -69958440 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 1555 941 224 12 128 chr1 127236992 127237075 -69958357 + ID_B1 SINE B4 149 223 -1 4 1555 224 274 164 35 chr1 127237137 127237300 -69958132 + MIR SINE MIR 2 183 -85 4 1555 1030 166 43 28 chr1 127237558 127237751 -69957681 - MTEa LTR MaLR -2 377 179 4 1555 6289 39 3 4 chr1 127237751 127238501 -69956931 - L1Md_F2 LINE L1 0 6582 5834 4 1555 1030 166 43 28 chr1 127238501 127238518 -69956914 - MTEa LTR MaLR -201 178 164 4 1555 7335 56 5 0 chr1 127238526 127239423 -69956009 - L1_Mus1 LINE L1 -2 6565 5665 4 1555 601 280 40 13 chr1 127239423 127239575 -69955857 - MTEa LTR MaLR -214 165 10 4 1555 350 279 12 155 chr1 127239779 127239940 -69955492 + MER5A1 DNA MER1_type 21 158 -8 4 1555 1302 245 116 16 chr1 127240953 127241334 -69954098 + MTD LTR MaLR 1 419 0 4 1555 729 29 29 0 chr1 127241605 127241709 -69953723 + (TG)n Simple_repeat Simple_repeat 1 107 0 4 1555 477 250 114 0 chr1 127241710 127241850 -69953582 - B3A SINE B2 -42 156 1 4 1555 2996 21 0 3 chr1 127242714 127243052 -69952380 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1555 9497 30 2 5 chr1 127243052 127244137 -69951295 - IAPEz-int LTR ERVK 0 6481 5400 4 1555 18564 36 43 15 chr1 127244112 127246566 -69948866 - IAPEz-int LTR ERVK -3807 2674 8 4 1555 3058 15 0 0 chr1 127246566 127246903 -69948529 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1555 2392 164 137 19 chr1 127247287 127247760 -69947672 - RLTR24 LTR ERV1 0 529 1 4 1555 599 252 151 7 chr1 127248667 127248819 -69946613 + MTE2b LTR MaLR 4 177 -202 4 1555 808 267 82 22 chr1 127249597 127249865 -69945567 + B4A SINE B4 2 285 -7 4 1555 216 291 36 0 chr1 127250240 127250295 -69945137 + ID2 SINE ID 27 83 0 4 1555 280 340 97 13 chr1 127250372 127250527 -69944905 + L1M5 LINE L1 5605 5772 -352 4 1555 375 142 57 0 chr1 127250729 127250835 -69944597 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 4 1555 477 168 0 0 chr1 127250882 127251013 -69944419 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 1555 640 250 7 14 chr1 127251018 127251156 -69944276 - B1F SINE Alu -1 148 12 4 1555 256 329 98 0 chr1 127251530 127251612 -69943820 + B4 SINE B4 15 104 -188 4 1555 327 146 0 0 chr1 127251797 127251852 -69943580 + (ATTG)n Simple_repeat Simple_repeat 2 56 0 4 1555 605 276 61 20 chr1 127251869 127252017 -69943415 + B3A SINE B2 7 160 -38 4 1555 387 0 0 0 chr1 127252025 127252068 -69943364 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1555 41399 16 1 7 chr1 127252127 127259364 -69936068 - L1Md_A LINE L1 -1 6581 1 4 1555 21 36 0 0 chr1 127259801 127259829 -69935603 + AT_rich Low_complexity Low_complexity 1 28 0 4 1555 720 169 12 8 chr1 127260414 127260819 -69934613 + (TG)n Simple_repeat Simple_repeat 1 407 0 4 1555 696 260 22 22 chr1 127260819 127261000 -69934432 - B3A SINE B2 -16 182 2 4 1555 4908 36 0 3 chr1 127261008 127261588 -69933844 - L1Md_F2 LINE L1 0 6582 6005 4 1555 1592 176 103 69 chr1 127261605 127261965 -69933467 + ORR1D1 LTR MaLR 3 374 0 4 1555 602 191 22 17 chr1 127262103 127262516 -69932916 + (TG)n Simple_repeat Simple_repeat 1 415 0 4 1555 421 324 40 59 chr1 127262520 127262822 -69932610 - B4A SINE B4 0 292 1 4 1555 356 284 0 6 chr1 127262914 127263077 -69932355 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 1555 231 203 0 0 chr1 127263146 127263205 -69932227 + (CATG)n Simple_repeat Simple_repeat 1 59 0 4 1555 321 335 11 23 chr1 127263205 127263382 -69932050 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 4 1555 1133 234 22 29 chr1 127263392 127263665 -69931767 - B4 SINE B4 -16 276 6 4 1555 487 248 97 65 chr1 127264950 127265105 -69930327 + RSINE1 SINE B4 6 165 0 5 1555 269 191 0 0 chr1 127265173 127265220 -69930212 + RSINE1 SINE B4 3 49 -116 5 1555 458 281 74 0 chr1 127265221 127265342 -69930090 + RSINE1 SINE B4 24 153 -12 5 1555 336 143 0 0 chr1 127265359 127265415 -69930017 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 1555 7152 55 108 1 chr1 127265787 127266736 -69928696 - L1_Mus3 LINE L1 0 6638 5588 5 1555 509 279 105 55 chr1 127266770 127267090 -69928342 - Lx8 LINE L1 -8 7465 7173 5 1555 261 277 98 32 chr1 127267647 127267770 -69927662 + Charlie18a DNA MER1_type 70 200 -142 5 1555 229 333 0 58 chr1 127267852 127267938 -69927494 + RSINE1 SINE B4 2 82 -83 5 1555 624 94 0 0 chr1 127268897 127269003 -69926429 + (TC)n Simple_repeat Simple_repeat 2 107 0 5 1555 180 0 0 0 chr1 127269003 127269023 -69926409 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1555 201 320 0 0 chr1 127269448 127269498 -69925934 + MIRm SINE MIR 42 91 -185 5 1555 898 231 58 36 chr1 127269731 127269822 -69925610 - Lx7 LINE L1 -1823 5873 5778 5 1555 1637 159 16 174 chr1 127269822 127270309 -69925123 - RMER17C LTR ERVK 0 410 1 5 1555 898 231 58 36 chr1 127270309 127270491 -69924941 - Lx7 LINE L1 -1919 5777 5594 5 1555 236 329 47 0 chr1 127270564 127270649 -69924783 - B3 SINE B2 -2 214 126 5 1555 887 233 86 56 chr1 127270651 127270785 -69924647 - MTE2b LTR MaLR -103 276 135 5 194 2718 151 17 138 chr1 127270785 127271385 -69924047 + RLTR11A2 LTR ERVK 1 527 0 5 1556 887 233 86 56 chr1 127271385 127271518 -69923914 - MTE2b LTR MaLR -245 134 1 5 1556 1193 239 24 127 chr1 127272888 127273250 -69922182 + ORR1D1 LTR MaLR 1 327 -47 5 1556 1764 169 56 87 chr1 127273250 127273640 -69921792 + ORR1C1 LTR MaLR 1 378 0 5 1556 1193 239 24 127 chr1 127273640 127273688 -69921744 + ORR1D1 LTR MaLR 328 369 -5 5 1556 236 132 48 145 chr1 127273940 127274002 -69921430 - PB1D7 SINE Alu 0 120 65 5 1556 407 184 0 26 chr1 127273947 127274025 -69921407 - ID_B1 SINE B4 0 224 149 5 1556 504 0 0 0 chr1 127274044 127274100 -69921332 + (TAG)n Simple_repeat Simple_repeat 3 58 0 5 1556 529 265 71 19 chr1 127274101 127274255 -69921177 - RSINE1 SINE B4 0 165 4 5 1556 291 293 34 68 chr1 127274255 127274337 -69921095 - B1F2 SINE Alu -70 79 1 5 1556 468 299 34 0 chr1 127274337 127274383 -69921049 - ID SINE ID -143 81 32 5 1556 695 290 0 21 chr1 127274417 127274558 -69920874 + RSINE1 SINE B4 28 165 0 5 1556 268 111 69 0 chr1 127274561 127274633 -69920799 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1556 628 264 0 8 chr1 127274668 127274794 -69920638 + B1_Mur1 SINE Alu 11 135 -14 5 1556 492 287 31 8 chr1 127274813 127274943 -69920489 + RSINE1 SINE B4 4 136 -29 5 1556 1001 90 28 0 chr1 127274988 127275132 -69920300 + B1_Mus1 SINE Alu 1 148 0 5 1556 195 301 0 0 chr1 127275134 127275207 -69920225 + A-rich Low_complexity Low_complexity 1 73 0 5 1556 384 328 24 0 chr1 127275875 127276000 -69919432 + RSINE1 SINE B4 4 131 -34 5 1556 226 302 99 41 chr1 127276062 127276183 -69919249 + Tigger5 DNA MER2_type 227 354 -2052 5 1556 1124 194 0 68 chr1 127276188 127276409 -69919023 + B3 SINE B2 5 210 -6 5 1556 918 42 17 0 chr1 127276455 127276575 -69918857 - B1_Mm SINE Alu -3 144 23 5 1556 904 204 99 5 chr1 127276650 127276852 -69918580 + ID_B1 SINE B4 3 223 -1 5 1556 232 256 69 86 chr1 127277138 127277313 -69918119 + Lx8 LINE L1 7301 7472 -1 5 1556 638 85 11 0 chr1 127277330 127277424 -69918008 + (AGGGGG)n Simple_repeat Simple_repeat 3 97 0 5 1556 409 255 39 0 chr1 127277981 127278083 -69917349 - RSINE1 SINE B4 -12 153 48 5 1556 21 0 0 0 chr1 127278175 127278196 -69917236 + AT_rich Low_complexity Low_complexity 1 21 0 5 1556 2433 117 6 3 chr1 127278207 127278533 -69916899 + ORR1A2 LTR MaLR 1 327 0 5 1556 240 35 0 0 chr1 127278571 127278600 -69916832 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1556 300 241 57 122 chr1 127278630 127278658 -69916774 - MT2A LTR ERVL -40 435 413 5 1556 273 98 0 0 chr1 127278658 127278699 -69916733 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1556 1295 201 178 126 chr1 127278699 127279137 -69916295 - MT2A LTR ERVL -72 461 1 5 1556 447 301 7 49 chr1 127279220 127279363 -69916069 - RSINE1 SINE B4 -15 150 14 5 1556 442 194 17 104 chr1 127279346 127279461 -69915971 + ORR1D2 LTR MaLR 24 128 -242 5 1556 634 177 202 0 chr1 127279665 127279823 -69915609 + ORR1D2 LTR MaLR 155 344 -26 5 1556 360 296 118 34 chr1 127279934 127280112 -69915320 - B3A SINE B2 -5 193 1 5 1556 570 279 130 18 chr1 127280336 127280621 -69914811 - L1MA4 LINE L1 -386 5914 5598 5 1556 385 244 237 30 chr1 127280769 127280904 -69914528 - RSINE1 SINE B4 0 165 3 5 1556 552 196 28 38 chr1 127281281 127281387 -69914045 + B3A SINE B2 1 105 -93 5 1556 210 129 15 61 chr1 127281397 127281463 -69913969 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 5 1556 926 191 164 5 chr1 127281505 127281694 -69913738 + URR1B DNA MER1_type 3 221 -4 5 1556 305 234 25 38 chr1 127281705 127281785 -69913647 + B3A SINE B2 117 195 -3 5 1556 285 271 56 63 chr1 127281791 127281917 -69913515 + B4 SINE B4 106 230 -62 5 1556 394 161 86 0 chr1 127281921 127282002 -69913430 + 4.5SRNA scRNA scRNA 6 93 -1 5 1556 481 250 142 24 chr1 127282002 127282129 -69913303 + B1_Mur1 SINE Alu 2 143 -6 5 1556 392 284 117 64 chr1 127282129 127282190 -69913242 + B4A SINE B4 87 284 -8 5 1556 405 0 0 0 chr1 127282197 127282242 -69913190 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1556 638 228 7 87 chr1 127282545 127282694 -69912738 - RSINE1 SINE B4 -28 137 1 5 1556 422 329 13 89 chr1 127283155 127283312 -69912120 - RSINE1 SINE B4 -15 150 6 5 1556 718 292 44 5 chr1 127283326 127283529 -69911903 - B4A SINE B4 -68 224 14 5 1556 211 337 0 112 chr1 127284327 127284434 -69910998 + B2_Mm2 SINE B2 1 95 -100 5 1556 21 0 0 0 chr1 127284584 127284605 -69910827 + AT_rich Low_complexity Low_complexity 1 21 0 5 1556 240 299 132 66 chr1 127284620 127284770 -69910662 - B4 SINE B4 -31 261 3 5 1556 289 272 86 11 chr1 127284770 127284863 -69910569 - B3A SINE B2 -96 102 3 5 1556 466 303 91 7 chr1 127285439 127285582 -69909850 - RSINE1 SINE B4 -8 157 3 5 1556 317 237 231 8 chr1 127285600 127285730 -69909702 + B3A SINE B2 2 159 -39 5 1556 288 0 0 0 chr1 127285744 127285776 -69909656 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1556 458 96 0 14 chr1 127285808 127285882 -69909550 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1556 1033 61 15 22 chr1 127285887 127286021 -69909411 - B1_Mus1 SINE Alu -15 133 1 5 1556 210 322 34 0 chr1 127286070 127286129 -69909303 + L2a LINE L2 3340 3400 -26 5 1556 412 299 91 77 chr1 127287308 127287597 -69907835 + B4 SINE B4 9 285 -7 5 1556 555 253 56 25 chr1 127287920 127288082 -69907350 + MTE2a LTR MaLR 213 379 0 5 1556 249 217 216 72 chr1 127288344 127288483 -69906949 + B4A SINE B4 71 229 -63 5 1556 204 40 0 0 chr1 127288745 127288770 -69906662 + (CCA)n Simple_repeat Simple_repeat 1 25 0 5 1556 472 311 67 62 chr1 127288794 127288989 -69906443 - B3 SINE B2 0 216 21 5 1556 200 59 29 0 chr1 127291555 127291589 -69903843 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1556 21 0 0 0 chr1 127291601 127291622 -69903810 + AT_rich Low_complexity Low_complexity 1 21 0 5 1556 504 184 21 17 chr1 127291939 127292068 -69903364 + L1MA5 LINE L1 6144 6277 -23 5 1556 435 331 133 22 chr1 127292192 127292560 -69902872 + L1MC4 LINE L1 7172 7580 -462 5 1556 515 260 66 96 chr1 127292605 127292771 -69902661 + RSINE1 SINE B4 4 164 -1 5 1556 1235 89 6 0 chr1 127292781 127292960 -69902472 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 5 1556 299 25 25 0 chr1 127292960 127293000 -69902432 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1556 445 298 8 69 chr1 127293187 127293317 -69902115 - RSINE1 SINE B4 -14 151 30 5 1556 970 237 43 19 chr1 127294482 127294693 -69900739 + B3 SINE B2 1 216 0 5 1556 343 292 72 14 chr1 127295070 127295209 -69900223 - MER82 DNA MER2_type -471 182 36 5 1556 384 22 0 0 chr1 127295798 127295843 -69899589 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1556 454 262 11 2 chr1 127295997 127296106 -69899326 - PB1D7 SINE Alu -40 109 1 5 1556 668 260 51 81 chr1 127296281 127296478 -69898954 + B3A SINE B2 8 198 0 5 1556 21 0 0 0 chr1 127296478 127296499 -69898933 + AT_rich Low_complexity Low_complexity 1 21 0 5 1556 1004 195 58 39 chr1 127296499 127296707 -69898725 + B3 SINE B2 2 213 -3 5 1556 1206 61 0 13 chr1 127297042 127297191 -69898241 - B1_Mus2 SINE Alu 0 147 1 5 1556 21 36 0 0 chr1 127297191 127297219 -69898213 + AT_rich Low_complexity Low_complexity 1 28 0 5 1556 723 252 172 15 chr1 127297295 127297621 -69897811 + Lx7 LINE L1 6926 7302 -394 5 1556 259 169 108 40 chr1 127297756 127297830 -69897602 + Lx7 LINE L1 7618 7696 0 5 1556 232 314 73 37 chr1 127298720 127298829 -69896603 - B1F2 SINE Alu -36 113 1 5 1556 213 39 0 0 chr1 127299923 127299949 -69895483 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1556 512 171 0 45 chr1 127300792 127300902 -69894530 + PB1D9 SINE Alu 6 110 -10 5 1556 2683 71 6 0 chr1 127300961 127301286 -69894146 - ORR1A2 LTR MaLR 0 327 1 5 1556 578 219 46 15 chr1 127301505 127301635 -69893797 - B1_Mur1 SINE Alu -2 147 14 5 1556 261 280 26 13 chr1 127302623 127302699 -69892733 + B4 SINE B4 16 92 -200 5 1556 22 80 0 0 chr1 127302756 127302806 -69892626 + AT_rich Low_complexity Low_complexity 1 50 0 5 1556 491 302 53 32 chr1 127302881 127303107 -69892325 - B4A SINE B4 -60 232 2 5 1556 350 256 124 30 chr1 127303213 127303414 -69892018 + L1ME1 LINE L1 5762 5981 -198 5 1556 402 218 44 131 chr1 127305426 127305618 -69889814 + Lx7 LINE L1 7554 7696 0 6 1556 226 181 239 71 chr1 127305624 127305737 -69889695 + L1M5 LINE L1 5392 5523 -656 6 1556 295 334 55 41 chr1 127306063 127306224 -69889208 + Cheshire DNA MER1_type 13 292 -2128 6 1556 205 231 0 19 chr1 127306237 127306290 -69889142 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 6 1556 230 56 28 0 chr1 127306294 127306330 -69889102 + (CCTA)n Simple_repeat Simple_repeat 3 39 0 6 1556 2963 34 40 6 chr1 127306430 127306781 -69888651 + L1Md_F2 LINE L1 6220 6582 0 6 1556 443 304 34 30 chr1 127306875 127307112 -69888320 + L1ME2z LINE L1 6161 6398 -46 6 1556 225 325 24 12 chr1 127307700 127307784 -69887648 + B1_Mus2 SINE Alu 2 86 -61 6 1556 284 400 73 0 chr1 127308266 127308376 -69887056 + PB1 SINE Alu 6 123 -4 6 1556 24 77 0 0 chr1 127308392 127308444 -69886988 + AT_rich Low_complexity Low_complexity 1 52 0 6 1556 384 280 62 39 chr1 127308564 127308694 -69886738 + MER119 DNA MER1_type 117 249 -334 6 1556 435 38 0 0 chr1 127308710 127308763 -69886669 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 6 1556 1582 139 32 111 chr1 127309132 127309473 -69885959 + ORR1B1 LTR MaLR 81 394 0 6 1556 542 192 9 46 chr1 127310886 127310995 -69884437 - B1F2 SINE Alu -3 146 42 6 1556 206 118 7 129 chr1 127310997 127311152 -69884280 + CT-rich Low_complexity Low_complexity 5 140 0 6 1556 238 230 49 0 chr1 127311152 127311164 -69884268 - B4A SINE B4 -67 157 126 6 1556 303 104 0 40 chr1 127311164 127311214 -69884218 - B1_Mus1 SINE Alu -88 60 13 6 1556 238 230 49 0 chr1 127311214 127311228 -69884204 - B4A SINE B4 -67 125 80 6 1556 826 155 294 17 chr1 127311331 127311508 -69883924 + URR1A DNA MER1_type 1 226 0 6 1556 482 184 192 10 chr1 127312636 127312740 -69882692 + B1_Mur2 SINE Alu 20 142 -7 6 1556 254 365 17 17 chr1 127313326 127313443 -69881989 - PB1D10 SINE Alu 0 117 1 6 1556 705 271 13 19 chr1 127313462 127313620 -69881812 + RSINE1 SINE B4 5 161 -4 6 1556 322 291 26 88 chr1 127313620 127313654 -69881778 + B2_Mm2 SINE B2 4 183 -12 6 1556 538 317 83 29 chr1 127313896 127314101 -69881331 + B3 SINE B2 1 216 0 6 1556 725 191 36 22 chr1 127315024 127315163 -69880269 + B1_Mur4 SINE Alu 2 142 -8 6 1556 331 268 0 58 chr1 127315186 127315273 -69880159 - ID4 SINE ID 0 83 2 6 1556 500 364 7 14 chr1 127315312 127315457 -69879975 - RSINE1 SINE B4 0 165 22 6 1556 623 298 7 26 chr1 127315488 127315643 -69879789 - RSINE1 SINE B4 -10 155 4 6 1556 1298 48 0 0 chr1 127317354 127317500 -69877932 + B1_Mm SINE Alu 1 146 -1 6 1556 1123 131 141 0 chr1 127317581 127317779 -69877653 - URR1A DNA MER1_type 0 226 1 6 1556 1005 237 15 5 chr1 127318100 127318299 -69877133 + B3 SINE B2 1 201 -15 6 1556 270 0 0 0 chr1 127318300 127318330 -69877102 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1556 225 65 0 0 chr1 127318569 127318600 -69876832 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1556 1256 41 7 7 chr1 127318884 127319030 -69876402 + B1_Mm SINE Alu 2 147 0 6 1556 247 225 53 53 chr1 127319266 127319341 -69876091 + ID4_ SINE ID 3 77 -6 6 1556 399 68 0 0 chr1 127320113 127320172 -69875260 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 6 1556 1544 47 0 0 chr1 127320541 127320732 -69874700 - L1Md_A LINE L1 -34 6548 6358 6 1556 201 39 0 0 chr1 127321632 127321658 -69873774 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1556 528 57 0 0 chr1 127321661 127321731 -69873701 - B1_Mur4 SINE Alu -6 144 75 6 1556 565 250 39 24 chr1 127321929 127322056 -69873376 - ID_B1 SINE B4 -14 210 82 6 1556 2660 142 60 49 chr1 127322302 127322814 -69872618 + RLTR12B LTR ERVK 1 518 -10 6 1556 1272 147 35 35 chr1 127322984 127323210 -69872222 + URR1A DNA MER1_type 1 226 0 6 1556 339 262 92 78 chr1 127323355 127323508 -69871924 + ORR1C2 LTR MaLR 65 219 -165 6 1556 3123 42 16 93 chr1 127323578 127324019 -69871413 - MTB_Mm LTR MaLR 0 407 1 6 1556 378 0 0 0 chr1 127324652 127324694 -69870738 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1556 448 314 8 8 chr1 127325555 127325677 -69869755 + RSINE1 SINE B4 11 132 -33 6 1556 1266 55 0 7 chr1 127326049 127326197 -69869235 + B1_Mus1 SINE Alu 1 147 -1 6 1556 28 0 0 0 chr1 127326512 127326540 -69868892 + AT_rich Low_complexity Low_complexity 1 28 0 6 1556 321 319 113 4 chr1 127326553 127326666 -69868766 + B1F SINE Alu 5 120 0 6 1556 210 263 134 73 chr1 127326778 127326860 -69868572 + ID_B1 SINE B4 83 169 -55 6 1556 186 43 0 0 chr1 127326875 127326898 -69868534 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1556 438 282 0 0 chr1 127327461 127327564 -69867868 + B1F1 SINE Alu 1 103 -46 6 1556 926 202 85 22 chr1 127327566 127327789 -69867643 + RMER1A Other Other 764 1000 -30 6 1556 22 35 0 0 chr1 127327792 127327821 -69867611 + AT_rich Low_complexity Low_complexity 1 29 0 6 1556 237 227 30 15 chr1 127329264 127329331 -69866101 - ID4_ SINE ID -13 70 3 6 1556 567 0 0 0 chr1 127331552 127331615 -69863817 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1556 204 40 0 0 chr1 127332009 127332034 -69863398 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 6 1556 273 310 0 17 chr1 127332120 127332235 -69863197 + C-rich Low_complexity Low_complexity 5 117 0 6 1556 512 262 48 24 chr1 127332922 127333047 -69862385 + RSINE1 SINE B4 3 130 -35 6 1556 180 200 0 0 chr1 127333332 127333372 -69862060 + A-rich Low_complexity Low_complexity 1 40 0 6 1556 214 351 79 0 chr1 127333412 127333526 -69861906 - MER5A DNA MER1_type -6 183 61 6 1556 668 74 11 0 chr1 127333676 127333771 -69861661 + (TCC)n Simple_repeat Simple_repeat 1 96 0 6 1556 642 273 366 12 chr1 127333831 127334254 -69861178 - Lx8 LINE L1 -327 7146 6574 6 1556 1589 213 65 50 chr1 127334943 127335252 -69860180 + RMER5 LTR ERV1 33 350 -184 6 1556 405 58 0 0 chr1 127335252 127335304 -69860128 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1556 1589 213 65 50 chr1 127335304 127335489 -69859943 + RMER5 LTR ERV1 351 534 0 6 1556 192 40 0 0 chr1 127336046 127336071 -69859361 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1556 668 271 18 6 chr1 127336093 127336264 -69859168 - ID_B1 SINE B4 -50 174 2 6 1556 293 315 44 11 chr1 127336365 127336455 -69858977 - MER102c DNA MER1_type -151 180 88 6 1556 870 246 5 40 chr1 127336616 127336815 -69858617 - B3A SINE B2 -4 194 3 6 1556 1020 206 97 23 chr1 127336970 127337228 -69858204 - Lx8 LINE L1 -326 7147 6871 6 1556 652 254 111 39 chr1 127337500 127337813 -69857619 - MTD LTR MaLR -14 405 40 6 1556 375 272 19 0 chr1 127337999 127338102 -69857330 + RSINE1 SINE B4 3 107 -58 6 1556 299 130 19 0 chr1 127338141 127338195 -69857237 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1556 297 0 0 0 chr1 127338919 127338952 -69856480 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1556 581 307 12 66 chr1 127338956 127339214 -69856218 - B4A SINE B4 -29 263 20 6 1556 830 226 58 5 chr1 127339379 127339584 -69855848 + B3 SINE B2 1 216 0 6 1556 567 289 47 0 chr1 127339768 127339917 -69855515 + ID_B1 SINE B4 13 168 -56 6 1556 1886 180 45 5 chr1 127340023 127340402 -69855030 - ORR1B1 LTR MaLR 0 394 1 6 1556 1217 245 54 106 chr1 127340579 127341015 -69854417 + MTD LTR MaLR 6 404 -15 6 1556 428 318 50 112 chr1 127341014 127341247 -69854185 + MLT1J LTR MaLR 104 323 -189 6 1556 2265 185 19 14 chr1 127341247 127341663 -69853769 + MTC LTR MaLR 4 421 0 6 1556 428 318 50 112 chr1 127341663 127341812 -69853620 + MLT1J LTR MaLR 324 462 -50 6 1556 238 321 0 60 chr1 127342055 127342171 -69853261 - ID_B1 SINE B4 -7 217 109 6 1556 645 210 104 83 chr1 127342883 127343075 -69852357 - B3A SINE B2 -1 197 2 6 1556 41 21 0 0 chr1 127343224 127343272 -69852160 + AT_rich Low_complexity Low_complexity 1 48 0 6 1556 734 266 13 0 chr1 127343272 127343430 -69852002 + B3A SINE B2 1 160 -38 6 1556 288 0 0 0 chr1 127343433 127343465 -69851967 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1556 288 0 0 0 chr1 127344546 127344578 -69850854 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1556 447 309 153 20 chr1 127344617 127344871 -69850561 + B4A SINE B4 3 290 -2 6 1556 1689 137 112 65 chr1 127345028 127345395 -69850037 - ORR1C2 LTR MaLR 0 384 1 6 1556 915 257 4 31 chr1 127345411 127345636 -69849796 - ID_B1 SINE B4 -4 220 2 6 1556 862 251 131 45 chr1 127346007 127346320 -69849112 - MTE2b LTR MaLR -39 340 1 6 1556 246 350 0 79 chr1 127346366 127346493 -69848939 + B3A SINE B2 78 194 -4 6 1556 207 274 48 16 chr1 127347376 127347439 -69847993 - MER5A DNA MER1_type -29 160 96 6 1556 703 282 6 6 chr1 127347474 127347649 -69847783 + Lx8 LINE L1 7111 7285 -188 6 1556 311 315 31 16 chr1 127347958 127348087 -69847345 + RMER15 LTR ERVL 385 515 -60 6 1556 182 128 0 25 chr1 127349275 127349315 -69846117 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1556 454 181 13 20 chr1 127349347 127349499 -69845933 + (CA)n Simple_repeat Simple_repeat 2 152 0 6 1556 301 305 72 58 chr1 127349671 127349810 -69845622 - RSINE1 SINE B4 -13 152 12 6 1556 788 226 94 5 chr1 127350264 127350477 -69844955 + B4A SINE B4 53 284 -8 6 1556 932 238 14 23 chr1 127350824 127351039 -69844393 - B3 SINE B2 0 216 4 6 1556 347 311 82 0 chr1 127352258 127352380 -69843052 + ID_B1 SINE B4 44 175 -49 6 1556 278 211 43 22 chr1 127352380 127352472 -69842960 + (TA)n Simple_repeat Simple_repeat 1 94 0 6 1556 483 314 12 61 chr1 127352472 127352635 -69842797 + RSINE1 SINE B4 11 165 0 7 1556 670 167 117 0 chr1 127352668 127352788 -69842644 + B1_Mur3 SINE Alu 5 138 -11 7 1556 24 32 0 0 chr1 127352944 127352975 -69842457 + AT_rich Low_complexity Low_complexity 1 31 0 7 1556 497 234 9 9 chr1 127352991 127353099 -69842333 - PB1D10 SINE Alu -6 111 4 7 1556 258 322 14 0 chr1 127353128 127353209 -69842223 - ID4_ SINE ID -59 93 12 7 1556 360 0 0 0 chr1 127353294 127353334 -69842098 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1556 510 209 99 9 chr1 127353339 127353450 -69841982 - RSINE1 SINE B4 -41 124 4 7 1556 364 293 43 14 chr1 127353458 127353609 -69841823 - MLT1C LTR MaLR -20 447 234 7 1556 514 348 42 21 chr1 127353718 127354003 -69841429 - B4A SINE B4 -1 291 1 7 1556 1108 262 127 14 chr1 127354398 127354823 -69840609 - RMER5 LTR ERV1 -16 518 46 7 1556 241 286 21 32 chr1 127354930 127355024 -69840408 + PB1 SINE Alu 8 100 -27 7 1556 182 91 30 0 chr1 127355416 127355449 -69839983 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1556 378 162 67 13 chr1 127355605 127355680 -69839752 + ID4_ SINE ID 4 82 -1 7 1556 349 244 0 0 chr1 127355684 127355766 -69839666 + ID_B1 SINE B4 90 171 -53 7 1556 1958 148 101 3 chr1 127355766 127356124 -69839308 + ORR1B1 LTR MaLR 2 394 0 7 1556 340 162 12 70 chr1 127356134 127356220 -69839212 - MTD LTR MaLR -338 81 1 7 1556 699 226 71 6 chr1 127356223 127356392 -69839040 - B3A SINE B2 -16 182 3 7 1556 774 272 68 36 chr1 127356475 127356753 -69838679 - B4 SINE B4 -2 290 4 7 1556 798 148 0 0 chr1 127356775 127356903 -69838529 + B3 SINE B2 2 129 -87 7 1556 497 209 38 9 chr1 127357387 127357493 -69837939 + RSINE1 SINE B4 8 116 -49 7 1556 752 232 72 19 chr1 127357499 127357706 -69837726 + ID_B1 SINE B4 5 222 -2 7 1556 494 31 16 0 chr1 127358146 127358210 -69837222 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 7 1556 475 254 0 0 chr1 127359316 127359426 -69836006 + B3 SINE B2 1 110 -106 7 1556 904 180 140 0 chr1 127359429 127359629 -69835803 + MTD LTR MaLR 84 311 -108 7 1556 308 219 36 38 chr1 127359775 127359887 -69835545 + L1MB5 LINE L1 5788 5906 -273 7 1556 254 306 18 18 chr1 127360039 127360152 -69835280 + Lx8 LINE L1 7154 7266 -207 7 1556 246 279 0 14 chr1 127360152 127360221 -69835211 + RMER15 LTR ERVL 403 470 -105 7 1556 342 80 0 0 chr1 127360438 127360488 -69834944 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1556 566 246 36 0 chr1 127360495 127360633 -69834799 - RSINE1 SINE B4 -19 146 4 7 1556 183 177 16 31 chr1 127361007 127361071 -69834361 + GA-rich Low_complexity Low_complexity 2 64 0 7 1556 396 0 0 0 chr1 127361152 127361196 -69834236 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1556 180 158 53 0 chr1 127361211 127361268 -69834164 + GA-rich Low_complexity Low_complexity 2 61 0 7 1556 359 314 78 90 chr1 127361319 127361564 -69833868 - B4A SINE B4 -50 242 1 7 1556 356 305 108 8 chr1 127361566 127361695 -69833737 - B1F SINE Alu 0 149 8 7 1556 3991 81 82 28 chr1 127361695 127362265 -69833167 + MT2B LTR ERVL 1 601 0 7 1556 342 0 0 0 chr1 127362486 127362524 -69832908 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 1556 1126 72 0 0 chr1 127362524 127362662 -69832770 - B1_Mus1 SINE Alu -9 139 2 7 1556 656 294 93 5 chr1 127362716 127362921 -69832511 - ID_B1 SINE B4 -1 223 1 7 1556 475 267 0 0 chr1 127362968 127363084 -69832348 - PB1D10 SINE Alu 0 117 2 7 1556 303 280 0 0 chr1 127363132 127363207 -69832225 + CT-rich Low_complexity Low_complexity 5 79 0 7 1556 720 207 0 0 chr1 127363701 127363836 -69831596 - B1_Mur1 SINE Alu -12 137 3 7 1556 233 250 57 121 chr1 127363716 127363857 -69831575 - MT2B LTR ERVL -323 278 147 7 1556 28 61 0 0 chr1 127363919 127363968 -69831464 + AT_rich Low_complexity Low_complexity 1 49 0 7 1556 269 156 112 38 chr1 127363987 127364067 -69831365 + B4 SINE B4 3 88 -204 7 1556 324 0 0 0 chr1 127364067 127364103 -69831329 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1556 22 35 0 0 chr1 127364236 127364265 -69831167 + AT_rich Low_complexity Low_complexity 1 29 0 7 1556 690 242 70 25 chr1 127364266 127364465 -69830967 + B4A SINE B4 83 290 -2 7 1556 183 80 0 0 chr1 127364501 127364526 -69830906 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1556 268 271 57 0 chr1 127364528 127364598 -69830834 + ID4 SINE ID 6 79 -4 7 1556 490 184 102 0 chr1 127364996 127365094 -69830338 - RSINE1 SINE B4 -46 119 12 7 1556 261 317 0 12 chr1 127365142 127365225 -69830207 - ID4 SINE ID -1 82 1 7 1556 264 21 61 20 chr1 127365448 127365497 -69829935 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 7 1556 951 33 0 0 chr1 127365617 127365738 -69829694 + B1_Mus1 SINE Alu 28 148 0 7 1556 551 40 0 13 chr1 127365743 127365818 -69829614 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 7 1556 254 354 12 0 chr1 127365830 127365912 -69829520 + RSINE1 SINE B4 83 165 0 7 1556 242 211 0 0 chr1 127365912 127365964 -69829468 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1556 232 254 12 123 chr1 127366011 127366092 -69829340 - ID4 SINE ID -10 73 2 7 1556 414 266 90 45 chr1 127366126 127366260 -69829172 + B1F SINE Alu 10 149 0 7 1556 239 54 27 0 chr1 127366264 127366301 -69829131 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 7 1556 648 213 269 12 chr1 127366328 127366499 -69828933 + B3 SINE B2 1 215 -1 7 1556 351 304 95 8 chr1 127366553 127366679 -69828753 + B1F SINE Alu 12 148 -1 7 1556 323 318 18 0 chr1 127367025 127367135 -69828297 - L2a LINE L2 -5 3421 3310 7 1556 466 346 65 7 chr1 127367169 127367291 -69828141 - B4 SINE B4 -84 208 77 7 1556 438 20 0 0 chr1 127367291 127367342 -69828090 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1556 466 346 65 7 chr1 127367342 127367373 -69828059 - B4 SINE B4 -216 76 46 7 1556 374 224 47 0 chr1 127367379 127367464 -69827968 + RSINE1 SINE B4 49 137 -28 7 1556 257 258 0 0 chr1 127367522 127367584 -69827848 - B4 SINE B4 -230 62 1 7 1556 971 264 106 8 chr1 127368820 127369187 -69826245 - MLT1A1 LTR MaLR 0 408 6 7 1556 772 265 32 18 chr1 127369188 127369407 -69826025 + ID_B1 SINE B4 2 223 -1 7 1556 366 205 0 0 chr1 127369411 127369489 -69825943 + GA-rich Low_complexity Low_complexity 4 81 0 7 1556 356 247 90 0 chr1 127369634 127369723 -69825709 + B1F1 SINE Alu 1 97 -52 7 1556 209 233 0 0 chr1 127369723 127369766 -69825666 + A-rich Low_complexity Low_complexity 1 43 0 7 1556 250 244 37 0 chr1 127370451 127370533 -69824899 + MLT1A1 LTR MaLR 301 385 -23 7 1556 1187 238 28 97 chr1 127370785 127371176 -69824256 + ORR1D2 LTR MaLR 1 364 -6 7 1556 1230 221 40 7 chr1 127371276 127371549 -69823883 - MTD LTR MaLR 0 419 138 7 1556 250 209 28 56 chr1 127371536 127371607 -69823825 - MLT1A1 LTR MaLR -39 369 301 7 1556 580 219 8 8 chr1 127371666 127371790 -69823642 - MTD LTR MaLR -274 145 22 7 1556 285 29 0 0 chr1 127371792 127371826 -69823606 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1556 289 151 57 0 chr1 127372141 127372194 -69823238 - PB1D7 SINE Alu 0 120 65 7 1556 797 220 62 11 chr1 127372148 127372327 -69823105 - ID_B1 SINE B4 -7 217 30 7 1556 23 54 0 0 chr1 127372420 127372457 -69822975 + AT_rich Low_complexity Low_complexity 1 37 0 7 1556 221 328 15 37 chr1 127372615 127372727 -69822705 + MIRm SINE MIR 27 143 -125 7 1556 438 20 0 0 chr1 127373242 127373293 -69822139 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1556 627 26 0 0 chr1 127373293 127373369 -69822063 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1556 467 279 86 6 chr1 127373917 127374079 -69821353 + B4A SINE B4 1 175 -117 7 1556 216 350 16 8 chr1 127374146 127374267 -69821165 + (CA)n Simple_repeat Simple_repeat 1 122 0 7 1556 385 243 93 0 chr1 127374700 127374807 -69820625 - B3 SINE B2 0 216 100 7 1556 976 146 6 6 chr1 127374839 127375018 -69820414 + GA-rich Low_complexity Low_complexity 2 180 0 7 1556 673 225 97 17 chr1 127375726 127375902 -69819530 - B3A SINE B2 -7 191 2 7 1556 411 80 22 44 chr1 127376333 127376424 -69819008 + (TCTCTG)n Simple_repeat Simple_repeat 4 92 0 7 1556 983 212 23 0 chr1 127376821 127377038 -69818394 - ID_B1 SINE B4 -1 223 2 7 1556 669 281 58 46 chr1 127377125 127377386 -69818046 - B4 SINE B4 -27 265 2 7 1556 760 172 84 19 chr1 127377480 127377634 -69817798 + B3 SINE B2 1 164 -52 7 1556 268 354 85 36 chr1 127377672 127378083 -69817349 - HAL1 LINE L1 -1704 803 373 7 1556 2610 147 93 82 chr1 127378168 127378768 -69816664 - RLTR18 LTR ERVK -9 607 1 7 1556 534 333 50 11 chr1 127379142 127379403 -69816029 + B4A SINE B4 2 272 -20 7 1556 504 100 0 0 chr1 127379405 127379485 -69815947 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1556 777 206 0 0 chr1 127380429 127380570 -69814862 - ID_B1 SINE B4 -1 223 83 7 1556 2074 173 30 18 chr1 127380573 127380943 -69814489 + MTC LTR MaLR 5 382 -39 7 1556 3010 41 7 81 chr1 127380943 127381364 -69814068 + RLTR10 LTR ERVK 1 390 0 7 1556 2074 173 30 18 chr1 127381364 127381392 -69814040 + MTC LTR MaLR 383 408 -13 7 1556 16633 24 1 40 chr1 127381392 127383396 -69812036 + RLTR10-int LTR ERVK 59 1984 -3 7 1556 2925 41 7 116 chr1 127383398 127383836 -69811596 + RLTR10 LTR ERVK 1 390 0 7 1556 262 209 44 15 chr1 127383980 127384048 -69811384 + PB1D10 SINE Alu 27 96 -21 7 1556 220 270 0 0 chr1 127384056 127384119 -69811313 + (CAA)n Simple_repeat Simple_repeat 3 65 0 7 1556 274 183 0 27 chr1 127384119 127384192 -69811240 + GA-rich Low_complexity Low_complexity 2 72 0 7 1556 394 279 10 127 chr1 127384493 127384690 -69810742 - B4A SINE B4 -118 174 1 8 1556 216 0 0 0 chr1 127384830 127384854 -69810578 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1556 472 287 95 7 chr1 127385028 127385165 -69810267 - RSINE1 SINE B4 -1 164 16 8 1556 1162 82 0 0 chr1 127385179 127385325 -69810107 - B1_Mm SINE Alu 0 147 2 8 1556 364 141 57 8 chr1 127385412 127385534 -69809898 + (TA)n Simple_repeat Simple_repeat 2 129 0 8 1556 337 240 8 46 chr1 127386214 127386244 -69809188 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1556 240 35 0 0 chr1 127386244 127386273 -69809159 + (GTGTG)n Simple_repeat Simple_repeat 1 29 0 8 1556 337 240 8 46 chr1 127386273 127386373 -69809059 + (TG)n Simple_repeat Simple_repeat 2 98 0 8 1556 1848 274 90 16 chr1 127386811 127387444 -69807988 + Lx8 LINE L1 6790 7469 -4 8 1556 741 197 0 8 chr1 127387874 127388002 -69807430 + B1_Mur4 SINE Alu 5 131 -19 8 1556 972 249 181 11 chr1 127388072 127388426 -69807006 - MTD LTR MaLR 0 419 6 8 1556 423 276 17 8 chr1 127388430 127388547 -69806885 + B3A SINE B2 40 157 -41 8 1556 729 288 159 17 chr1 127388833 127389186 -69806246 - MTD LTR MaLR -16 403 1 8 1556 342 0 0 0 chr1 127389228 127389266 -69806166 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1556 469 275 33 0 chr1 127389273 127389393 -69806039 + RSINE1 SINE B4 8 131 -34 8 1556 183 129 0 0 chr1 127389406 127389437 -69805995 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 8 1556 725 290 62 10 chr1 127389454 127389649 -69805783 + B3 SINE B2 3 207 -9 8 1556 1021 246 38 52 chr1 127390114 127390405 -69805027 + B4A SINE B4 5 291 -1 8 1556 246 264 7 21 chr1 127390902 127391029 -69804403 + (TATATG)n Simple_repeat Simple_repeat 4 127 0 8 1556 351 0 0 0 chr1 127391029 127391068 -69804364 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1556 246 264 7 21 chr1 127391068 127391083 -69804349 + (TATATG)n Simple_repeat Simple_repeat 6 21 0 8 1556 457 147 7 52 chr1 127391116 127391252 -69804180 + (TATG)n Simple_repeat Simple_repeat 4 133 0 8 1556 412 217 11 21 chr1 127391524 127391618 -69803814 - PB1D10 SINE Alu -2 115 23 8 1556 357 310 45 37 chr1 127391710 127391844 -69803588 - RSINE1 SINE B4 -27 138 4 8 1556 313 210 176 86 chr1 127392030 127392315 -69803117 + RLTR12B LTR ERVK 68 456 -72 8 1556 1276 27 0 0 chr1 127392538 127392685 -69802747 + B1_Mus2 SINE Alu 1 147 0 8 1556 258 105 0 0 chr1 127392685 127392723 -69802709 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1556 227 179 0 35 chr1 127393177 127393235 -69802197 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 8 1556 320 321 9 28 chr1 127393294 127393403 -69802029 + PB1D10 SINE Alu 3 109 -8 8 1556 261 372 0 0 chr1 127393405 127393499 -69801933 + GA-rich Low_complexity Low_complexity 2 95 0 8 1556 619 247 78 0 chr1 127393881 127394047 -69801385 + ID_B1 SINE B4 24 202 -22 8 1556 185 0 0 39 chr1 127394201 127394227 -69801205 + (ATG)n Simple_repeat Simple_repeat 2 26 0 8 1556 394 319 30 0 chr1 127394355 127394490 -69800942 + B1F1 SINE Alu 3 141 -8 8 1556 300 246 0 0 chr1 127394605 127394666 -69800766 + RSINE1 SINE B4 69 129 -36 8 1556 2420 141 57 20 chr1 127394740 127395146 -69800286 + MTC LTR MaLR 1 421 0 8 1556 1112 252 99 18 chr1 127395214 127395552 -69799880 + MTD LTR MaLR 18 368 -32 8 1556 21 36 0 0 chr1 127395906 127395934 -69799498 + AT_rich Low_complexity Low_complexity 1 28 0 8 1556 391 245 0 5 chr1 127396071 127396162 -69799270 + ID4 SINE ID 11 99 -53 8 1556 286 244 98 0 chr1 127396292 127396374 -69799058 + B1F SINE Alu 50 139 -10 8 1556 296 292 0 0 chr1 127396384 127396456 -69798976 + GA-rich Low_complexity Low_complexity 3 74 0 8 1556 254 95 24 0 chr1 127396945 127396987 -69798445 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1556 700 235 60 0 chr1 127397005 127397154 -69798278 - RSINE1 SINE B4 -3 162 5 8 1556 534 256 62 34 chr1 127397299 127397477 -69797955 - Lx8 LINE L1 -359 7114 6932 8 1556 202 178 22 22 chr1 127397747 127397793 -69797639 + (TATG)n Simple_repeat Simple_repeat 1 46 0 8 1556 515 318 78 36 chr1 127397809 127398028 -69797404 - B4A SINE B4 -37 255 28 8 1556 1020 168 112 10 chr1 127398070 127398275 -69797157 + URR1A DNA MER1_type 1 226 0 8 1556 378 0 0 0 chr1 127399062 127399104 -69796328 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 8 1556 301 237 38 13 chr1 127399296 127399384 -69796048 - MTEa LTR MaLR -6 373 276 8 1556 1218 236 22 138 chr1 127399663 127400076 -69795356 - MTE2a LTR MaLR -14 365 1 8 1556 778 259 86 52 chr1 127400205 127400463 -69794969 + B4 SINE B4 3 267 -25 8 1556 351 0 0 0 chr1 127400463 127400502 -69794930 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1556 697 237 15 45 chr1 127400701 127400900 -69794532 + B3A SINE B2 4 196 -2 8 1556 576 130 0 0 chr1 127401025 127401117 -69794315 - URR1B DNA MER1_type -45 180 89 8 1556 321 231 0 0 chr1 127401235 127401300 -69794132 - ID_B1 SINE B4 0 224 160 8 1556 1162 246 42 47 chr1 127401307 127401708 -69793724 + MTD LTR MaLR 7 405 -14 8 1556 632 292 6 6 chr1 127401723 127401885 -69793547 - ID_B1 SINE B4 -62 162 1 8 1557 291 181 0 0 chr1 127402624 127402696 -69792736 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1557 276 270 0 39 chr1 127402697 127402774 -69792658 - B4A SINE B4 -1 291 218 8 1557 785 270 0 0 chr1 127402792 127402955 -69792477 - RSINE1 SINE B4 0 165 3 8 1557 250 49 65 16 chr1 127403274 127403336 -69792096 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 8 1557 454 297 96 34 chr1 127403601 127403810 -69791622 + B4A SINE B4 2 223 -69 8 1557 636 259 7 7 chr1 127403860 127404004 -69791428 + RSINE1 SINE B4 3 146 -19 8 1557 891 161 4 17 chr1 127404057 127404291 -69791141 + CT-rich Low_complexity Low_complexity 1 231 0 8 1557 387 0 0 0 chr1 127404635 127404678 -69790754 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1557 258 205 0 0 chr1 127404698 127404776 -69790656 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1557 549 0 0 0 chr1 127405080 127405141 -69790291 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1557 243 239 71 43 chr1 127405141 127405211 -69790221 - B4 SINE B4 -20 272 201 8 1557 4649 206 92 35 chr1 127405212 127406489 -69788943 + RMER1A Other Other 26 1009 -21 8 1557 412 221 95 32 chr1 127406490 127406616 -69788816 - B4 SINE B4 -79 213 80 8 1557 413 269 8 48 chr1 127406611 127406736 -69788696 - PB1D9 SINE Alu 0 120 1 8 1557 218 189 0 0 chr1 127406891 127406928 -69788504 + T-rich Low_complexity Low_complexity 3 39 0 8 1557 198 0 0 0 chr1 127407098 127407120 -69788312 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1557 414 268 155 0 chr1 127407196 127407338 -69788094 + ID_B1 SINE B4 2 165 -59 8 1557 15372 22 0 0 chr1 127407412 127409171 -69786261 + L1Md_T LINE L1 3828 5586 -297 8 1557 9137 8 0 0 chr1 127409171 127410167 -69785265 + L1Md_T LINE L1 5587 6582 0 8 1557 1257 87 0 0 chr1 127410955 127411163 -69784269 + (TATATG)n Simple_repeat Simple_repeat 1 208 0 8 1557 635 198 0 8 chr1 127411166 127411288 -69784144 - RSINE1 SINE B4 -40 125 5 8 1557 901 120 0 72 chr1 127411920 127411973 -69783459 + B1_Mus1 SINE Alu 1 53 -95 8 1557 1184 43 0 0 chr1 127411973 127412112 -69783320 + B1_Mus2 SINE Alu 1 139 -8 8 1557 901 120 0 72 chr1 127412112 127412211 -69783221 + B1_Mus1 SINE Alu 54 142 -6 8 1557 311 150 17 0 chr1 127412240 127412300 -69783132 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1557 508 321 51 6 chr1 127412343 127412500 -69782932 - RSINE1 SINE B4 0 165 2 8 1557 1470 22 0 0 chr1 127412506 127412684 -69782748 + (TTCCC)n Simple_repeat Simple_repeat 1 178 0 8 1557 564 161 0 0 chr1 127412687 127412811 -69782621 + C-rich Low_complexity Low_complexity 4 127 0 8 1557 605 105 11 0 chr1 127412795 127412890 -69782542 + (TC)n Simple_repeat Simple_repeat 2 97 0 8 1557 1189 68 0 0 chr1 127412901 127413047 -69782385 + B1_Mm SINE Alu 2 147 0 8 1557 1094 172 0 16 chr1 127413051 127413234 -69782198 - B2_Mm2 SINE B2 -14 181 2 8 1557 197 378 46 26 chr1 127413603 127413755 -69781677 + L2b LINE L2 3220 3374 -1 8 1557 767 186 20 33 chr1 127413788 127413938 -69781494 - B1_Mur3 SINE Alu -1 148 1 8 1557 604 285 78 0 chr1 127413980 127414159 -69781273 - B3A SINE B2 0 198 6 8 1557 524 300 117 51 chr1 127414218 127414492 -69780940 - B4A SINE B4 0 292 1 8 1557 245 261 0 104 chr1 127414684 127414761 -69780671 - RSINE1 SINE B4 0 165 97 8 1557 189 0 0 0 chr1 127414771 127414792 -69780640 + (TAA)n Simple_repeat Simple_repeat 1 21 0 8 1557 204 209 21 62 chr1 127414811 127414908 -69780524 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 8 1557 442 250 41 68 chr1 127414921 127415067 -69780365 - B4 SINE B4 -69 223 82 8 1557 483 162 25 8 chr1 127415067 127415185 -69780247 + CT-rich Low_complexity Low_complexity 2 121 0 8 1557 1200 111 0 0 chr1 127415186 127415366 -69780066 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1557 267 183 67 0 chr1 127415377 127415437 -69779995 - B4 SINE B4 -226 66 3 8 1557 294 262 47 30 chr1 127415525 127415636 -69779796 - MTEa LTR MaLR -14 405 279 8 1557 218 216 0 0 chr1 127416615 127416652 -69778780 + B1_Mus2 SINE Alu 7 43 -104 8 1557 762 266 87 79 chr1 127416685 127416833 -69778599 + ORR1E LTR MaLR 2 139 -220 8 1557 568 243 57 0 chr1 127416833 127416973 -69778459 - B1F2 SINE Alu -1 148 1 8 1557 762 266 87 79 chr1 127416973 127417179 -69778253 + ORR1E LTR MaLR 140 358 -1 8 1557 387 0 0 0 chr1 127417370 127417413 -69778019 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1557 198 0 0 0 chr1 127417413 127417434 -69777998 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1557 448 307 29 46 chr1 127417579 127417753 -69777679 + MER21B LTR ERV1 143 313 -550 8 1557 896 248 24 9 chr1 127417753 127417965 -69777467 + ID_B1 SINE B4 1 215 -9 8 1557 468 0 0 0 chr1 127418001 127418053 -69777379 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 9 1557 411 269 93 63 chr1 127418238 127418508 -69776924 + RMER2 LTR ERV1 290 567 0 9 1557 420 355 30 26 chr1 127418600 127418834 -69776598 + MER21B LTR ERV1 364 598 -265 8 1557 2282 177 70 64 chr1 127419009 127419539 -69775893 - MT2A LTR ERVL 0 533 1 9 1557 235 100 188 62 chr1 127419548 127419612 -69775820 - MTD LTR MaLR -11 408 337 9 1557 1860 166 46 43 chr1 127419648 127420020 -69775412 + RLTR14 LTR ERV1 10 382 0 9 1557 349 206 237 0 chr1 127420036 127420133 -69775299 - MTD LTR MaLR -101 295 176 9 1557 449 183 68 8 chr1 127420198 127420330 -69775102 - Lx9 LINE L1 0 7644 7505 9 1557 735 164 59 15 chr1 127420346 127420482 -69774950 - B1_Mus1 SINE Alu 0 148 7 9 1557 653 202 23 0 chr1 127420487 127420616 -69774816 - Lx9 LINE L1 -162 7482 7351 9 1557 694 277 99 0 chr1 127420620 127420822 -69774610 + Lx9 LINE L1 7073 7294 -350 9 1557 760 250 0 39 chr1 127420859 127421063 -69774369 - MTD LTR MaLR -211 208 13 9 1557 207 0 0 0 chr1 127421118 127421141 -69774291 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1557 412 296 154 19 chr1 127421179 127421341 -69774091 + B4A SINE B4 1 184 -108 9 1557 217 219 14 14 chr1 127421346 127421420 -69774012 + (ATG)n Simple_repeat Simple_repeat 2 75 0 9 1557 696 281 42 5 chr1 127421424 127421617 -69773815 + ID_B1 SINE B4 2 201 -23 9 1557 480 266 0 0 chr1 127421653 127421766 -69773666 + B3A SINE B2 5 117 -81 9 1557 2017 105 44 13 chr1 127421798 127422115 -69773317 + ORR1A4 LTR MaLR 3 329 0 9 1557 266 266 10 26 chr1 127422412 127422512 -69772920 - B3A SINE B2 -103 95 1 9 1557 369 399 0 7 chr1 127422531 127422680 -69772752 - MER63A DNA AcHobo -51 159 12 9 1557 223 376 0 27 chr1 127423854 127423966 -69771466 - RSINE1 SINE B4 -7 158 50 9 1557 908 234 60 0 chr1 127424745 127424946 -69770486 + ID_B1 SINE B4 1 213 -11 9 1557 427 129 14 0 chr1 127425672 127425742 -69769690 + RMER15 LTR ERVL 405 475 -100 9 1557 315 0 0 0 chr1 127425877 127425912 -69769520 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1557 1620 229 27 5 chr1 127426265 127426634 -69768798 - MTEa LTR MaLR -2 377 1 9 1557 337 318 29 143 chr1 127427160 127427369 -69768063 - B3A SINE B2 0 216 32 9 1557 1187 73 0 0 chr1 127427465 127427651 -69767781 + L1VL1 LINE L1 962 1147 -2551 9 1557 25 0 0 0 chr1 127427683 127427708 -69767724 + AT_rich Low_complexity Low_complexity 1 25 0 9 1557 267 231 83 9 chr1 127427882 127427991 -69767441 + L1M4 LINE L1 5240 5356 -790 9 1557 746 211 7 13 chr1 127429174 127429323 -69766109 - B1_Mur2 SINE Alu -1 148 1 9 1557 2129 237 146 62 chr1 127429334 127430278 -69765154 - RLTR13D2 LTR ERVK 0 1023 1 9 1557 968 150 0 0 chr1 127430292 127430439 -69764993 - ETnERV3-int LTR ERVK -28 5780 5634 9 1557 428 226 11 0 chr1 127430439 127430532 -69764900 - RLTR13D6 LTR ERVK -808 94 1 9 1557 366 270 45 0 chr1 127430586 127430697 -69764735 - RSINE1 SINE B4 -35 130 15 9 1557 3072 50 37 0 chr1 127431141 127431523 -69763909 + MTA_Mm LTR MaLR 1 396 0 9 1557 568 316 13 74 chr1 127431645 127431956 -69763476 - B4 SINE B4 0 292 1 9 1557 776 157 118 132 chr1 127432299 127432404 -69763028 - URR1B DNA MER1_type 0 225 149 9 1557 1063 65 0 0 chr1 127432404 127432543 -69762889 - L1_Mus1 LINE L1 -1 6566 6428 9 1557 776 157 118 132 chr1 127432543 127432665 -69762767 - URR1B DNA MER1_type -77 148 1 9 1557 320 276 51 80 chr1 127432670 127432808 -69762624 - MLT1F LTR MaLR -24 525 392 9 1557 387 252 50 10 chr1 127432997 127433097 -69762335 + B4A SINE B4 99 202 -90 9 1557 772 286 32 0 chr1 127433141 127433358 -69762074 + ID_B1 SINE B4 1 224 0 9 1557 271 290 115 18 chr1 127433476 127433641 -69761791 - MIRc SINE MIR -5 263 83 9 1557 1138 263 96 14 chr1 127434126 127434520 -69760912 + MTE2b LTR MaLR 6 405 -14 9 1557 198 0 0 0 chr1 127434702 127434724 -69760708 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1557 1637 158 117 56 chr1 127434943 127435318 -69760114 + MTD LTR MaLR 14 411 -8 9 1557 21 0 0 0 chr1 127435328 127435349 -69760083 + AT_rich Low_complexity Low_complexity 1 21 0 9 1557 283 234 78 0 chr1 127435357 127435421 -69760011 + ID4_ SINE ID 1 69 -14 9 1557 588 260 42 94 chr1 127435471 127435662 -69759770 - B3A SINE B2 -16 182 2 9 1557 198 0 0 0 chr1 127435984 127436006 -69759426 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1557 792 232 51 134 chr1 127436032 127436346 -69759086 - MTE2a LTR MaLR -33 346 59 9 1557 208 0 0 59 chr1 127436371 127436405 -69759027 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1557 1097 83 0 0 chr1 127436405 127436540 -69758892 - B1_Mus1 SINE Alu -8 140 6 9 1557 1041 120 0 18 chr1 127436574 127436744 -69758688 + B2_Mm2 SINE B2 1 167 -28 9 1557 31 44 0 0 chr1 127436777 127436822 -69758610 + AT_rich Low_complexity Low_complexity 1 45 0 9 1557 390 302 19 0 chr1 127437160 127437266 -69758166 + B4A SINE B4 3 110 -182 9 1557 277 266 25 0 chr1 127437326 127437405 -69758027 + MER76 LTR ERVL 24 104 -587 9 1557 998 172 6 6 chr1 127437497 127437813 -69757619 + CT-rich Low_complexity Low_complexity 1 316 0 9 1557 484 213 0 53 chr1 127437843 127437957 -69757475 - RSINE1 SINE B4 -33 132 25 9 1557 644 310 20 15 chr1 127438440 127438640 -69756792 + B4 SINE B4 2 202 -90 9 1557 405 0 0 0 chr1 127438648 127438693 -69756739 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 9 1557 235 341 11 0 chr1 127438721 127438809 -69756623 + (CA)n Simple_repeat Simple_repeat 2 90 0 9 1557 273 256 58 11 chr1 127439361 127439448 -69755984 + B1F2 SINE Alu 1 91 -58 9 1557 410 272 69 159 chr1 127439458 127439703 -69755729 + ID_B1 SINE B4 2 224 0 9 1557 374 0 22 0 chr1 127440019 127440065 -69755367 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1557 264 59 39 19 chr1 127440155 127440207 -69755225 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1557 227 281 0 0 chr1 127440216 127440280 -69755152 + CT-rich Low_complexity Low_complexity 2 65 0 9 1557 261 0 0 0 chr1 127440294 127440323 -69755109 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1557 710 196 15 0 chr1 127440340 127440473 -69754959 - RSINE1 SINE B4 -28 137 3 9 1557 678 225 71 75 chr1 127440482 127440708 -69754724 - B4A SINE B4 -67 225 1 9 1557 1074 90 21 0 chr1 127440743 127440887 -69754545 - B1_Mus1 SINE Alu 0 148 2 9 1557 198 103 0 0 chr1 127441450 127441479 -69753953 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 9 1557 405 229 295 17 chr1 127441481 127441654 -69753778 - ID_B1 SINE B4 -2 222 2 9 1557 518 248 146 6 chr1 127442010 127442168 -69753264 + ID_B1 SINE B4 43 222 -2 9 1557 222 62 0 0 chr1 127442331 127442363 -69753069 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1557 495 73 0 0 chr1 127442363 127442431 -69753001 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 9 1557 1223 42 0 0 chr1 127442695 127442839 -69752593 + B1_Mm SINE Alu 3 146 -1 9 1557 1218 117 6 11 chr1 127442863 127443044 -69752388 + B2_Mm1t SINE B2 2 181 -12 9 1557 339 118 310 9 chr1 127443073 127443182 -69752250 + B2_Mm2 SINE B2 46 192 -3 9 1557 21 0 0 0 chr1 127443427 127443448 -69751984 + AT_rich Low_complexity Low_complexity 1 21 0 9 1557 207 0 0 0 chr1 127443528 127443551 -69751881 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1557 216 0 0 0 chr1 127443551 127443574 -69751858 + (TA)n Simple_repeat Simple_repeat 1 24 0 9 1557 351 0 0 0 chr1 127443574 127443612 -69751820 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1557 1178 228 125 65 chr1 127444002 127444433 -69750999 - RMER13A LTR ERVK -395 465 9 9 1557 468 0 0 0 chr1 127444441 127444493 -69750939 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 9 1557 238 145 64 26 chr1 127444554 127444632 -69750800 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 9 1557 1070 254 145 44 chr1 127444877 127445566 -69749866 - L1MA8 LINE L1 -27 6264 5474 9 1557 936 211 33 28 chr1 127445602 127445817 -69749615 - B3 SINE B2 0 216 1 9 1557 373 312 53 77 chr1 127445907 127446207 -69749225 - B4 SINE B4 -11 281 2 9 1557 387 198 48 19 chr1 127446212 127446315 -69749117 - L1MA8 LINE L1 -869 5434 5329 9 1557 799 256 159 22 chr1 127446810 127447125 -69748307 - RMER15 LTR ERVL 0 575 218 9 1557 348 119 0 0 chr1 127447345 127447404 -69748028 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1557 266 132 0 19 chr1 127447458 127447512 -69747920 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1557 395 38 0 19 chr1 127447582 127447636 -69747796 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1557 490 220 127 7 chr1 127447638 127447780 -69747652 + L1MA5 LINE L1 5796 5938 -362 9 1557 226 396 0 0 chr1 127448159 127448250 -69747182 + MER2B DNA MER2_type 238 328 -8 9 1557 309 256 13 0 chr1 127448336 127448414 -69747018 + MER89 LTR ERV1 1 79 -480 9 1557 614 310 61 35 chr1 127448428 127448739 -69746693 + MER89 LTR ERV1 193 511 -48 9 1557 272 367 0 0 chr1 127448749 127448847 -69746585 - MER2 DNA MER2_type -8 337 240 9 1557 676 205 58 56 chr1 127448947 127449127 -69746305 - B3 SINE B2 -15 183 1 9 1557 415 254 17 17 chr1 127449139 127449255 -69746177 - B4 SINE B4 -95 197 82 9 1557 22834 11 18 0 chr1 127449262 127452437 -69742995 - L1Md_A LINE L1 0 6582 3328 9 1557 344 226 0 35 chr1 127452439 127452526 -69742906 - B4 SINE B4 -205 87 4 9 1557 346 318 122 13 chr1 127452526 127452681 -69742751 - MER2 DNA MER2_type -169 176 5 9 1557 1681 181 12 9 chr1 127453681 127454016 -69741416 - MTC LTR MaLR -85 336 1 9 1557 1299 175 137 24 chr1 127454085 127454123 -69741309 - MTD LTR MaLR -54 365 327 9 1557 2490 82 3 6 chr1 127454123 127454453 -69740979 + ORR1A4 LTR MaLR 1 329 0 9 1557 1299 175 137 24 chr1 127454453 127454742 -69740690 - MTD LTR MaLR -93 326 2 9 1557 304 339 81 16 chr1 127455073 127455086 -69740346 + B4 SINE B4 68 88 -204 9 1557 546 220 0 18 chr1 127455086 127455197 -69740235 + B1_Mur1 SINE Alu 2 110 -39 9 1557 273 119 0 0 chr1 127455197 127455239 -69740193 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1557 369 257 257 0 chr1 127455240 127455341 -69740091 - B1_Mur2 SINE Alu -21 128 2 9 1557 2128 86 16 0 chr1 127455610 127455925 -69739507 - ORR1A2 LTR MaLR -7 320 1 9 1557 649 255 155 53 chr1 127455967 127456232 -69739200 - B4A SINE B4 0 292 1 1 1557 25 31 0 0 chr1 127457580 127457612 -69737820 + GC_rich Low_complexity Low_complexity 1 32 0 1 1557 379 204 220 9 chr1 127458321 127458430 -69737002 - ID_B1 SINE B4 -12 212 81 1 1557 745 249 13 87 chr1 127458513 127458742 -69736690 - ID_B1 SINE B4 -8 216 5 1 1557 519 313 90 0 chr1 127459459 127459625 -69735807 - B3A SINE B2 -16 182 2 1 1557 206 62 0 30 chr1 127460116 127460149 -69735283 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1557 549 237 9 0 chr1 127460314 127460428 -69735004 - RSINE1 SINE B4 -44 121 7 1 1557 415 196 110 18 chr1 127460823 127460932 -69734500 + B1_Mur1 SINE Alu 17 135 -14 1 1557 295 254 0 0 chr1 127461089 127461156 -69734276 - B1F SINE Alu -3 146 80 1 1557 764 300 45 19 chr1 127461334 127461602 -69733830 + B4A SINE B4 18 292 0 1 1557 216 0 0 0 chr1 127461937 127461961 -69733471 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1557 323 366 67 29 chr1 127462267 127462542 -69732890 + B4 SINE B4 9 289 -3 1 1557 321 141 0 0 chr1 127462568 127462639 -69732793 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 1 1557 898 164 14 0 chr1 127463304 127463450 -69731982 + B1_Mus1 SINE Alu 1 148 0 1 1557 219 173 0 0 chr1 127463556 127463608 -69731824 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1 1557 441 54 0 0 chr1 127463605 127463661 -69731771 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 1557 268 308 37 99 chr1 127463675 127463837 -69731595 - B3A SINE B2 -44 154 3 1 1557 384 306 56 34 chr1 127464357 127464536 -69730896 - L1MB2 LINE L1 -2 6169 5987 1 1557 203 304 0 0 chr1 127464923 127464979 -69730453 + MIRb SINE MIR 123 178 -90 1 1557 873 265 45 25 chr1 127465702 127465988 -69729444 + B4A SINE B4 1 292 0 1 1557 253 293 125 22 chr1 127466066 127466202 -69729230 + L2a LINE L2 3252 3401 -25 1 1557 22 0 0 0 chr1 127466446 127466468 -69728964 + AT_rich Low_complexity Low_complexity 1 22 0 1 1557 180 0 0 0 chr1 127466468 127466488 -69728944 + (TAG)n Simple_repeat Simple_repeat 3 22 0 1 1557 274 309 71 0 chr1 127466506 127466590 -69728842 - RSINE1 SINE B4 -15 150 61 1 1557 1836 125 19 15 chr1 127466552 127466872 -69728560 - ORR1A4 LTR MaLR -4 370 1 1 1557 264 265 19 10 chr1 127467446 127467549 -69727883 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1557 632 271 73 21 chr1 127467552 127467744 -69727688 - ID_B1 SINE B4 -3 221 20 1 1557 243 0 0 0 chr1 127467904 127467931 -69727501 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 1557 897 162 14 7 chr1 127467933 127468076 -69727356 - B1_Mur4 SINE Alu -6 144 1 1 1557 1150 75 0 14 chr1 127468349 127468497 -69726935 - B1_Mus2 SINE Alu 0 147 2 1 1557 28 29 0 0 chr1 127468508 127468543 -69726889 + AT_rich Low_complexity Low_complexity 1 35 0 1 1557 477 181 160 9 chr1 127468551 127468657 -69726775 - RSINE1 SINE B4 -35 130 9 1 1557 501 239 19 37 chr1 127469124 127469285 -69726147 - RSINE1 SINE B4 0 165 8 1 1557 1011 277 30 0 chr1 127469462 127469733 -69725699 + B4 SINE B4 8 286 -6 1 1557 372 278 18 36 chr1 127469846 127469958 -69725474 - B4A SINE B4 -178 114 5 1 1557 318 239 402 30 chr1 127470146 127470302 -69725130 - B3A SINE B2 -3 213 2 1 1557 201 74 0 0 chr1 127470311 127470338 -69725094 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1557 242 231 58 0 chr1 127470363 127470415 -69725017 - ID4 SINE ID -1 82 28 1 1557 28 29 0 0 chr1 127470416 127470451 -69724981 + AT_rich Low_complexity Low_complexity 1 35 0 1 1557 243 301 101 55 chr1 127470474 127470583 -69724849 - PB1D7 SINE Alu -6 114 1 1 1557 742 211 38 44 chr1 127470697 127470880 -69724552 + B3A SINE B2 1 182 -16 1 1557 887 133 54 32 chr1 127470923 127471109 -69724323 + B2_Mm2 SINE B2 2 191 -4 1 1557 342 200 129 0 chr1 127471452 127471537 -69723895 - B1F2 SINE Alu -11 138 43 1 1557 266 132 0 70 chr1 127471486 127471543 -69723889 - 4.5SRNA scRNA scRNA -6 88 36 1 1557 197 33 33 0 chr1 127471815 127471845 -69723587 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 1557 1042 123 0 0 chr1 127471849 127471995 -69723437 - B1_Mus2 SINE Alu 0 147 2 1 1557 479 269 0 51 chr1 127472463 127472600 -69722832 + B1_Mur4 SINE Alu 12 141 -9 1 1557 347 320 46 106 chr1 127472883 127473100 -69722332 + B3A SINE B2 2 205 -11 1 1557 354 305 116 8 chr1 127474280 127474409 -69721023 + MER58A DNA MER1_type 29 171 -53 1 1557 416 304 59 49 chr1 127474636 127474840 -69720592 + MIR SINE MIR 26 231 -31 1 1557 278 255 137 18 chr1 127475507 127475657 -69719775 + MIR SINE MIR 26 193 -75 1 1557 198 167 0 0 chr1 127476028 127476064 -69719368 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1557 576 298 12 12 chr1 127476067 127476227 -69719205 - RSINE1 SINE B4 -3 162 3 1 1557 1230 41 0 0 chr1 127476403 127476550 -69718882 + B1_Mus2 SINE Alu 1 147 0 1 1557 355 327 67 73 chr1 127476779 127477122 -69718310 - L1MC4a LINE L1 -305 7577 7237 1 1557 32 26 0 0 chr1 127477321 127477360 -69718072 + AT_rich Low_complexity Low_complexity 1 39 0 1 1557 4445 131 15 7 chr1 127477360 127478037 -69717395 - Lx4A LINE L1 -5 7053 6372 1 1557 1310 73 27 27 chr1 127478379 127478563 -69716869 + B2_Mm1t SINE B2 1 184 -9 1 1557 343 310 74 101 chr1 127478901 127479159 -69716273 - B4 SINE B4 0 292 42 1 1557 995 36 0 91 chr1 127479257 127479291 -69716141 + B1_Mus1 SINE Alu 9 30 -118 1 1557 5940 48 42 1 chr1 127479291 127480024 -69715408 - L1_Mus1 LINE L1 0 6567 5805 1 1557 995 36 0 91 chr1 127480024 127480143 -69715289 + B1_Mus1 SINE Alu 31 148 0 1 1557 285 105 13 38 chr1 127480143 127480222 -69715210 + A-rich Low_complexity Low_complexity 6 82 0 1 1557 570 67 0 0 chr1 127480227 127480302 -69715130 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1557 357 43 0 0 chr1 127480302 127480348 -69715084 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 1 1557 941 152 137 34 chr1 127480507 127480711 -69714721 + URR1B DNA MER1_type 1 225 0 1 1557 410 264 169 27 chr1 127481266 127481449 -69713983 - B4A SINE B4 -81 211 3 1 1557 1058 163 93 5 chr1 127482242 127482446 -69712986 + URR1A DNA MER1_type 1 222 -4 1 1557 22 35 0 0 chr1 127482555 127482584 -69712848 + AT_rich Low_complexity Low_complexity 1 29 0 1 1557 647 271 136 12 chr1 127482593 127482843 -69712589 + B4A SINE B4 1 281 -11 1 1557 731 191 102 51 chr1 127483299 127483476 -69711956 + B3A SINE B2 4 189 -9 1 1557 1076 88 0 13 chr1 127483644 127483793 -69711639 - B1_Mus2 SINE Alu 0 147 1 1 1557 502 279 48 24 chr1 127484189 127484354 -69711078 + B4 SINE B4 36 204 -88 1 1557 180 0 0 0 chr1 127484423 127484443 -69710989 + (CACAC)n Simple_repeat Simple_repeat 5 24 0 1 1557 229 229 0 0 chr1 127484478 127484526 -69710906 - PB1D9 SINE Alu -68 52 5 1 1557 573 228 135 47 chr1 127484849 127485019 -69710413 + B3A SINE B2 8 192 -6 1 1557 621 278 66 126 chr1 127485412 127485713 -69709719 - B4 SINE B4 0 292 10 1 1557 500 253 188 47 chr1 127486620 127486875 -69708557 - B4A SINE B4 0 292 2 1 1557 283 323 0 31 chr1 127486895 127486991 -69708441 - PB1D10 SINE Alu -1 116 24 1 1557 313 231 61 53 chr1 127487014 127487128 -69708304 + PB1D7 SINE Alu 3 117 -3 1 1557 650 146 0 16 chr1 127487775 127487900 -69707532 + CT-rich Low_complexity Low_complexity 4 126 0 1 1557 626 243 7 7 chr1 127487900 127488045 -69707387 - B1_Mur1 SINE Alu 0 149 5 1 1557 299 289 51 51 chr1 127488083 127488240 -69707192 + MIR SINE MIR 14 170 -92 1 1557 1227 215 29 15 chr1 127488373 127488647 -69706785 - B4A SINE B4 -14 278 1 1 1557 205 244 0 0 chr1 127488778 127488819 -69706613 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1557 364 337 55 59 chr1 127489469 127489619 -69705813 - Lx8 LINE L1 -11 7462 7315 1 1557 207 0 0 0 chr1 127489619 127489642 -69705790 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1557 364 337 55 59 chr1 127489642 127489781 -69705651 - Lx8 LINE L1 -159 7314 7175 1 1557 554 267 87 0 chr1 127489968 127490118 -69705314 + ID_B1 SINE B4 62 224 0 1 1557 230 259 33 11 chr1 127490142 127490232 -69705200 - HAL1 LINE L1 -294 2213 2122 1 1557 642 224 62 62 chr1 127490582 127490777 -69704655 + B3A SINE B2 1 195 -3 1 1557 240 35 0 0 chr1 127491158 127491187 -69704245 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1557 452 311 34 0 chr1 127491190 127491338 -69704094 - RSINE1 SINE B4 -12 153 1 1 1557 21 0 0 0 chr1 127492360 127492381 -69703051 + AT_rich Low_complexity Low_complexity 1 21 0 1 1557 450 259 29 29 chr1 127492450 127492589 -69702843 + ID_B1 SINE B4 1 139 -85 1 1557 210 259 0 0 chr1 127492593 127492651 -69702781 + GA-rich Low_complexity Low_complexity 2 59 0 1 1557 228 254 28 14 chr1 127492654 127492726 -69702706 + ID_B1 SINE B4 121 193 -31 1 1557 376 187 316 29 chr1 127493159 127493330 -69702102 + B4 SINE B4 3 222 -70 1 1557 262 293 0 62 chr1 127493624 127493704 -69701728 + B4 SINE B4 218 292 0 1 1557 399 41 0 0 chr1 127493724 127493773 -69701659 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1557 275 325 17 34 chr1 127494392 127494510 -69700922 - Lx8 LINE L1 -210 7263 7148 1 1557 1322 234 74 0 chr1 127494515 127494878 -69700554 - Lx8 LINE L1 -718 6755 6366 1 1557 552 276 84 18 chr1 127495351 127495517 -69699915 - B3A SINE B2 -18 180 4 1 1557 375 293 40 8 chr1 127495623 127495747 -69699685 - ID_B1 SINE B4 -1 223 96 1 1557 342 260 125 0 chr1 127495798 127495902 -69699530 + PB1 SINE Alu 1 117 -10 1 1557 1072 236 140 14 chr1 127495902 127496137 -69699295 - MTD LTR MaLR -4 415 165 1 1557 3042 115 192 15 chr1 127496137 127496441 -69698991 + RMER6C LTR ERVK 1 362 -328 1 1557 251 93 23 0 chr1 127496441 127496484 -69698948 + (CAGTG)n Simple_repeat Simple_repeat 2 45 0 1 1557 3042 115 192 15 chr1 127496484 127496763 -69698669 + RMER6C LTR ERVK 363 687 -3 1 1557 1072 236 140 14 chr1 127496763 127496883 -69698549 - MTD LTR MaLR -255 164 15 1 1557 217 205 0 0 chr1 127496889 127496928 -69698504 + GA-rich Low_complexity Low_complexity 4 42 0 1 1557 810 278 17 30 chr1 127497580 127497810 -69697622 - B4A SINE B4 -61 231 5 1 1557 2320 80 48 0 chr1 127498649 127498961 -69696471 - ORR1A2 LTR MaLR 0 327 1 1 1557 225 178 0 0 chr1 127498962 127499007 -69696425 + CT-rich Low_complexity Low_complexity 3 47 0 1 1557 320 325 24 24 chr1 127499059 127499185 -69696247 + B4 SINE B4 5 130 -162 1 1557 336 48 0 0 chr1 127499208 127499250 -69696182 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1557 468 0 0 0 chr1 127499250 127499301 -69696131 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1557 495 259 26 31 chr1 127499551 127499746 -69695686 - B3A SINE B2 -4 194 1 1 1557 266 172 0 30 chr1 127499933 127499999 -69695433 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1 1557 1261 236 27 67 chr1 127500273 127500645 -69694787 + ORR1E LTR MaLR 1 357 -2 1 1557 523 264 33 40 chr1 127501423 127501573 -69693859 + RSINE1 SINE B4 13 161 -4 2 1557 225 0 0 0 chr1 127501653 127501678 -69693754 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1557 755 196 201 0 chr1 127502153 127502337 -69693095 - URR1B DNA MER1_type 0 225 5 4 1557 1246 231 106 3 chr1 127502501 127502831 -69692601 + MTE2b LTR MaLR 7 370 -9 5 1557 228 86 0 0 chr1 127503345 127503380 -69692052 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1557 419 48 0 16 chr1 127503456 127503519 -69691913 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1557 257 291 87 43 chr1 127503877 127503992 -69691440 + Lx8 LINE L1 7257 7376 -97 8 1557 226 184 0 0 chr1 127503994 127504032 -69691400 + B3A SINE B2 2 39 -159 9 1557 486 0 0 0 chr1 127504034 127504088 -69691344 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1557 498 293 0 8 chr1 127504633 127504767 -69690665 - B3A SINE B2 -37 161 29 1 1557 225 0 0 0 chr1 127504774 127504799 -69690633 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1557 258 32 0 0 chr1 127504803 127504834 -69690598 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1557 427 228 169 34 chr1 127504834 127504947 -69690485 - RSINE1 SINE B4 -30 135 6 1 1557 212 273 0 68 chr1 127505178 127505237 -69690195 + ID SINE ID 3 57 -167 1 1557 257 295 16 0 chr1 127505240 127505301 -69690131 - B4 SINE B4 -16 276 215 1 1557 8077 29 3 2 chr1 127505336 127506267 -69689165 - L1Md_F3 LINE L1 -4 6580 5649 1 1557 2785 69 39 0 chr1 127506275 127506638 -69688794 - L1_Mus2 LINE L1 -1 6565 6189 1 1557 727 217 124 29 chr1 127506638 127506847 -69688585 - B4 SINE B4 -61 231 3 1 1557 696 267 184 25 chr1 127506933 127507298 -69688134 + MLT2B1 LTR ERVL 4 426 -94 1 1557 608 242 97 7 chr1 127507378 127507532 -69687900 + ORR1E LTR MaLR 8 175 -184 2 1557 489 294 22 17 chr1 127507655 127507835 -69687597 - L1M4 LINE L1 -743 5437 5257 2 1557 469 264 7 40 chr1 127508362 127508512 -69686920 - MTD LTR MaLR -7 412 268 2 1557 720 289 58 48 chr1 127508547 127508841 -69686591 - MTD LTR MaLR -122 297 1 2 1557 439 288 97 18 chr1 127508875 127509101 -69686331 - L1M4 LINE L1 -915 5231 4988 2 1557 239 273 0 0 chr1 127509305 127509371 -69686061 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1557 273 29 0 0 chr1 127509391 127509425 -69686007 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1557 743 161 0 8 chr1 127510086 127510205 -69685227 + PB1D9 SINE Alu 2 119 -1 2 1557 217 290 0 68 chr1 127510212 127510286 -69685146 + RSINE1 SINE B4 2 70 -95 2 1557 279 308 87 11 chr1 127510392 127510484 -69684948 + RSINE1 SINE B4 2 100 -65 2 1557 573 115 0 0 chr1 127510689 127510776 -69684656 + (CACG)n Simple_repeat Simple_repeat 2 88 0 2 1557 1122 122 0 0 chr1 127510776 127510956 -69684476 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1557 227 264 0 0 chr1 127511016 127511069 -69684363 + B4 SINE B4 2 54 -238 2 1557 3259 43 5 5 chr1 127511817 127512213 -69683219 + MTA_Mm LTR MaLR 1 396 0 3 1557 555 320 55 10 chr1 127512375 127512574 -69682858 + MER44D DNA MER2_type 1 208 -497 3 1557 34 55 0 0 chr1 127512674 127512729 -69682703 + AT_rich Low_complexity Low_complexity 1 55 0 3 1557 186 43 0 0 chr1 127512752 127512775 -69682657 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1557 471 18 0 0 chr1 127512776 127512832 -69682600 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1557 721 213 24 6 chr1 127512833 127513003 -69682429 - ID_B1 SINE B4 -49 175 3 3 1557 465 256 55 38 chr1 127513005 127513110 -69682322 + MER44D DNA MER2_type 519 623 -82 3 1557 240 35 0 0 chr1 127513110 127513139 -69682293 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1557 465 256 55 38 chr1 127513139 127513216 -69682216 + MER44D DNA MER2_type 624 704 -1 3 1557 390 287 35 117 chr1 127513571 127513768 -69681664 + MTE2a LTR MaLR 20 200 -179 3 1557 216 0 0 0 chr1 127513813 127513837 -69681595 + (CTG)n Simple_repeat Simple_repeat 1 24 0 3 1557 21945 16 0 0 chr1 127513876 127516365 -69679067 + L1Md_T LINE L1 3099 5586 -297 3 1557 8688 28 1 0 chr1 127516365 127517360 -69678072 + L1Md_T LINE L1 5587 6582 0 3 1557 22 0 0 0 chr1 127517368 127517390 -69678042 + AT_rich Low_complexity Low_complexity 1 22 0 4 1557 250 208 27 14 chr1 127517391 127517464 -69677968 + MTE2a LTR MaLR 305 378 -1 3 1557 657 332 72 20 chr1 127517475 127517880 -69677552 - MT2A LTR ERVL -105 428 3 4 1557 351 0 0 0 chr1 127518857 127518896 -69676536 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1557 1125 184 107 0 chr1 127518897 127519130 -69676302 + ORR1C2 LTR MaLR 126 383 -1 4 1557 459 0 0 0 chr1 127519171 127519222 -69676210 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1557 298 267 123 16 chr1 127519229 127519351 -69676081 - RSINE1 SINE B4 -28 137 3 4 1557 315 260 64 16 chr1 127519368 127519493 -69675939 - L1ME1 LINE L1 -186 5993 5863 4 1557 411 319 77 35 chr1 127519683 127519943 -69675489 - L1ME1 LINE L1 -322 5857 5587 4 1557 269 307 62 69 chr1 127519954 127520269 -69675163 + RSINE1 SINE B4 1 278 -14 4 1557 642 298 66 41 chr1 127520353 127520887 -69674545 - L1ME1 LINE L1 -669 5510 4970 4 1557 448 279 16 0 chr1 127520935 127521057 -69674375 + L1M1 LINE L1 5363 5486 -817 4 1557 600 239 150 17 chr1 127521061 127521295 -69674137 + B4 SINE B4 7 271 -21 4 1557 430 302 6 12 chr1 127521393 127521554 -69673878 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1557 1210 249 81 71 chr1 127521952 127522282 -69673150 + RMER5 LTR ERV1 1 324 -210 5 1557 2980 128 53 18 chr1 127522282 127522791 -69672641 - RLTR11A LTR ERVK 0 528 2 5 1557 1210 249 81 71 chr1 127522791 127522969 -69672463 + RMER5 LTR ERV1 325 514 -20 5 1557 660 283 55 28 chr1 127524162 127524334 -69671098 + MLT1A0 LTR MaLR 130 308 -57 5 1557 264 77 0 0 chr1 127524334 127524373 -69671059 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1557 660 283 55 28 chr1 127524373 127524418 -69671014 + MLT1A0 LTR MaLR 309 353 -12 5 1557 206 247 13 27 chr1 127524511 127524586 -69670846 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1557 1524 139 43 115 chr1 127525239 127525612 -69669820 - ORR1B1 LTR MaLR -8 386 41 5 1557 675 67 0 0 chr1 127525796 127525885 -69669547 + (TCC)n Simple_repeat Simple_repeat 2 90 0 5 1557 209 346 28 19 chr1 127526089 127526195 -69669237 + MIRb SINE MIR 61 167 -101 5 1557 293 275 38 38 chr1 127526448 127526554 -69668878 + MIRc SINE MIR 61 166 -102 5 1557 525 302 138 8 chr1 127526592 127526846 -69668586 - B4 SINE B4 -3 289 3 6 1557 445 309 6 57 chr1 127527372 127527530 -69667902 + RSINE1 SINE B4 16 165 0 6 1557 1261 274 68 26 chr1 127527710 127528168 -69667264 - RMER5 LTR ERV1 -10 524 48 6 1557 481 247 30 61 chr1 127528222 127528386 -69667046 + RMER15 LTR ERVL 1 159 -416 6 1557 673 288 78 22 chr1 127528385 127528655 -69666777 + RMER15 LTR ERVL 275 559 -16 6 1557 222 37 0 0 chr1 127529701 127529728 -69665704 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 6 1557 310 238 419 23 chr1 127529735 127529864 -69665568 - B3A SINE B2 -16 182 3 6 1557 4371 164 35 11 chr1 127530077 127530889 -69664543 - RMER13A LTR ERVK 0 860 30 6 1557 805 173 14 35 chr1 127530929 127531073 -69664359 + B1_Mur2 SINE Alu 2 142 -7 6 1557 255 238 0 0 chr1 127531774 127531885 -69663547 + (CA)n Simple_repeat Simple_repeat 1 111 0 6 1557 454 216 32 6 chr1 127531897 127532032 -69663400 - L1MA4A LINE L1 -400 5903 5751 6 1557 390 89 0 0 chr1 127532032 127532088 -69663344 - ORR1A3 LTR MaLR 0 329 274 7 1557 996 66 15 0 chr1 127532110 127532247 -69663185 - B1_Mm SINE Alu 0 147 9 7 1557 1619 102 68 8 chr1 127532256 127532522 -69662910 - ORR1A3 LTR MaLR -44 282 1 7 194 1254 285 103 53 chr1 127532522 127533353 -69662079 - L1MA4A LINE L1 -126 5721 4849 6 1558 1721 265 105 52 chr1 127533398 127533635 -69661797 - Lx8 LINE L1 -5 7468 7229 7 1558 788 204 210 0 chr1 127533635 127533811 -69661621 + B3 SINE B2 1 213 -3 7 1558 1721 265 105 52 chr1 127533811 127534230 -69661202 - Lx8 LINE L1 -245 7228 6777 7 1558 882 279 24 8 chr1 127534246 127534573 -69660859 - L1M2 LINE L1 -1288 4858 4528 7 1558 1173 279 16 16 chr1 127535045 127535410 -69660022 + MTE2b LTR MaLR 13 377 -2 7 1558 505 282 26 60 chr1 127536888 127537039 -69658393 - B3A SINE B2 -41 157 12 7 1558 516 154 38 9 chr1 127537138 127537243 -69658189 - Lx4B LINE L1 -2 7056 6949 7 1558 412 220 49 25 chr1 127537251 127537386 -69658046 - MLT1E1A LTR MaLR -433 247 112 7 1558 241 318 30 60 chr1 127537459 127537593 -69657839 + RMER15 LTR ERVL 1 130 -445 7 1558 235 258 153 32 chr1 127537663 127537787 -69657645 + RMER15 LTR ERVL 345 483 -92 7 1558 628 257 171 8 chr1 127537783 127538034 -69657398 + ORR1D1 LTR MaLR 6 297 -77 8 1558 1601 81 8 21 chr1 127538034 127538274 -69657158 - IAPEY_LTR LTR ERVK 0 385 149 8 1558 2102 74 0 0 chr1 127538275 127538546 -69656886 + L1_Mus1 LINE L1 6297 6567 0 8 1558 186 200 0 0 chr1 127538552 127538569 -69656863 + A-rich Low_complexity Low_complexity 1 17 0 8 1558 1227 68 0 0 chr1 127538569 127538717 -69656715 + B1_Mus1 SINE Alu 1 148 0 8 1558 186 200 0 0 chr1 127538717 127538744 -69656688 + A-rich Low_complexity Low_complexity 18 44 0 8 1558 251 190 0 17 chr1 127538759 127538818 -69656614 + GA-rich Low_complexity Low_complexity 2 59 0 8 1558 329 272 37 0 chr1 127538952 127539033 -69656399 + RMER15 LTR ERVL 492 575 0 7 1558 290 296 18 9 chr1 127539279 127539388 -69656044 - Tigger9a DNA Tigger -50 682 573 8 1558 704 271 16 21 chr1 127539688 127539880 -69655552 + B3A SINE B2 1 191 -7 8 1558 534 95 21 10 chr1 127539959 127540055 -69655377 + (TC)n Simple_repeat Simple_repeat 2 98 0 8 1558 21 0 0 0 chr1 127540618 127540639 -69654793 + AT_rich Low_complexity Low_complexity 1 21 0 9 1558 339 215 134 93 chr1 127540663 127540798 -69654634 - B4 SINE B4 0 292 78 9 1558 1278 121 81 32 chr1 127540790 127541037 -69654395 + ORR1B1 LTR MaLR 136 394 0 9 1558 305 269 47 19 chr1 127541081 127541187 -69654245 - MTE2b LTR MaLR -267 112 4 9 1558 242 254 41 27 chr1 127541478 127541551 -69653881 + B3A SINE B2 117 190 -8 9 1558 384 77 0 0 chr1 127541958 127542010 -69653422 + (TCC)n Simple_repeat Simple_repeat 2 53 0 9 1558 488 260 102 7 chr1 127542035 127542182 -69653250 - B4A SINE B4 -129 163 3 9 1558 850 273 32 11 chr1 127542262 127542547 -69652885 - L1MB3 LINE L1 -1 6182 5892 9 1558 236 298 0 0 chr1 127542548 127542605 -69652827 + Cheshire DNA MER1_type 43 99 -2321 9 1558 397 252 19 0 chr1 127542615 127542718 -69652714 + Cheshire DNA MER1_type 2316 2420 0 9 1558 402 258 68 8 chr1 127542752 127542885 -69652547 - MER34A1 LTR ERV1 -20 567 427 9 1558 424 267 111 43 chr1 127542984 127543317 -69652115 - MT2A LTR ERVL 0 533 143 9 1558 1036 73 0 42 chr1 127543321 127543464 -69651968 + B1_Mus2 SINE Alu 2 138 -9 1 1558 423 0 0 0 chr1 127543464 127543511 -69651921 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 1 1558 413 283 94 0 chr1 127543654 127543813 -69651619 + MER2 DNA MER2_type 105 278 -67 1 1558 222 37 0 0 chr1 127544011 127544038 -69651394 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1558 952 230 25 0 chr1 127544369 127544569 -69650863 - B3 SINE B2 -7 209 5 1 1558 319 333 0 0 chr1 127545186 127545267 -69650165 - RSINE1 SINE B4 -83 82 2 1 1558 259 345 95 0 chr1 127545377 127545493 -69649939 - PB1 SINE Alu 0 127 1 1 1558 1125 256 85 77 chr1 127545729 127546225 -69649207 - RMER5 LTR ERV1 -34 500 1 1 1558 674 262 116 26 chr1 127546391 127546658 -69648774 - B4A SINE B4 0 292 2 1 1558 587 296 22 6 chr1 127547498 127547678 -69647754 - B3A SINE B2 0 198 16 1 1558 617 300 67 32 chr1 127547683 127547965 -69647467 - B4 SINE B4 0 292 1 1 1558 566 280 25 15 chr1 127548092 127548288 -69647144 - MER31B LTR ERV1 -30 436 239 1 1558 213 132 0 0 chr1 127548452 127548490 -69646942 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1558 625 232 45 0 chr1 127548740 127548895 -69646537 - B3A SINE B2 -3 195 34 1 1558 285 273 169 15 chr1 127548965 127549095 -69646337 - MER31B LTR ERV1 -316 150 1 1 1558 965 262 136 40 chr1 127551740 127552210 -69643222 - RMER15 LTR ERVL 0 575 61 1 1558 902 18 9 0 chr1 127552386 127552499 -69642933 - MTA_Mm LTR MaLR 0 396 283 1 1558 7146 20 12 7 chr1 127552495 127553409 -69642023 - MTA_Mm-int LTR MaLR -179 919 1 1 1558 3631 8 2 0 chr1 127553409 127553804 -69641628 - MTA_Mm LTR MaLR 0 396 1 1 1558 495 60 0 0 chr1 127553839 127553906 -69641526 + (CAAAA)n Simple_repeat Simple_repeat 1 67 0 1 1558 24 53 0 0 chr1 127553955 127553993 -69641439 + AT_rich Low_complexity Low_complexity 1 38 0 1 1558 552 268 0 0 chr1 127555273 127555593 -69639839 + (TG)n Simple_repeat Simple_repeat 1 320 0 1 1558 494 339 46 6 chr1 127555776 127555951 -69639481 - B3A SINE B2 -16 182 1 1 1558 1141 206 4 21 chr1 127555951 127556181 -69639251 - B4 SINE B4 -66 226 1 1 1558 1328 229 101 3 chr1 127556286 127556654 -69638778 - MTD LTR MaLR -14 405 2 1 1558 304 279 65 8 chr1 127557173 127557296 -69638136 - RMER15 LTR ERVL -23 552 423 1 1558 1097 260 27 74 chr1 127557580 127557946 -69637486 + ORR1E LTR MaLR 1 349 -10 1 1558 339 301 63 51 chr1 127558086 127558099 -69637333 - MTEa LTR MaLR -2 377 366 1 1558 1569 57 0 10 chr1 127558099 127558294 -69637138 - B2_Mm1t SINE B2 0 193 1 1 1558 352 277 96 21 chr1 127558294 127558455 -69636977 - MTEa LTR MaLR -12 367 201 1 1558 195 184 0 0 chr1 127558462 127558500 -69636932 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1558 416 319 36 26 chr1 127558518 127558711 -69636721 - MTEa LTR MaLR -183 196 2 1 1558 1155 257 81 14 chr1 127559287 127559670 -69635762 - MTD LTR MaLR -14 405 1 1 1558 225 281 154 23 chr1 127560075 127560190 -69635242 - L1MA5 LINE L1 0 6300 6168 1 1558 189 0 0 0 chr1 127560190 127560211 -69635221 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1558 225 281 154 23 chr1 127560211 127560270 -69635162 - L1MA5 LINE L1 -133 6167 6103 1 1558 1106 167 112 8 chr1 127560343 127560584 -69634848 - Lx9 LINE L1 -1 7643 7378 1 1558 844 228 30 41 chr1 127560580 127560777 -69634655 + Lx9 LINE L1 7161 7355 -289 1 1558 333 0 0 0 chr1 127561053 127561090 -69634342 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1558 384 321 18 70 chr1 127561340 127561369 -69634063 + ID_B1 SINE B4 55 216 -8 1 1558 674 229 0 14 chr1 127561369 127561511 -69633921 + B1_Mur1 SINE Alu 2 141 -8 1 1558 239 177 16 0 chr1 127561513 127561575 -69633857 + GA-rich Low_complexity Low_complexity 2 64 0 1 1558 1342 152 13 13 chr1 127561793 127562019 -69633413 - URR1A DNA MER1_type 0 226 1 1 1558 498 296 70 5 chr1 127562225 127562425 -69633007 - MLT1G1 LTR MaLR -5 574 362 1 1558 639 199 69 0 chr1 127562580 127562711 -69632721 + B1F SINE Alu 10 149 0 1 1558 186 43 0 0 chr1 127562737 127562760 -69632672 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1 1558 1005 275 34 35 chr1 127562816 127563176 -69632256 - MTD LTR MaLR -14 405 52 1 1558 414 0 0 0 chr1 127563185 127563231 -69632201 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1558 632 209 276 25 chr1 127563774 127564058 -69631374 - MTEa LTR MaLR -1 378 24 1 1558 261 277 48 0 chr1 127564478 127564561 -69630871 + B4A SINE B4 4 90 -202 1 1558 468 214 582 21 chr1 127565199 127565387 -69630045 - Lx5 LINE L1 -10 7040 6747 1 1558 405 0 0 0 chr1 127565408 127565453 -69629979 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1558 242 157 98 0 chr1 127565453 127565504 -69629928 - L1M3 LINE L1 -1068 5072 5017 1 1558 219 65 0 0 chr1 127565552 127565567 -69629865 + (TG)n Simple_repeat Simple_repeat 2 16 0 1 1558 690 38 130 19 chr1 127565567 127565675 -69629757 + L1Md_F2 LINE L1 6457 6576 -6 1 1558 219 65 0 0 chr1 127565675 127565690 -69629742 + (TG)n Simple_repeat Simple_repeat 1 15 0 1 1558 562 236 117 12 chr1 127565690 127565853 -69629579 - B3A SINE B2 -15 183 4 1 1558 1190 257 56 94 chr1 127565892 127566092 -69629340 - L1M3 LINE L1 -1163 4977 4792 1 1558 681 76 0 0 chr1 127566092 127566184 -69629248 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 1558 1190 257 56 94 chr1 127566184 127566592 -69628840 - L1M3 LINE L1 -1349 4791 4392 1 1558 961 226 0 10 chr1 127566611 127566812 -69628620 - B4 SINE B4 0 292 94 1 1558 562 312 6 44 chr1 127566812 127566993 -69628439 - B3A SINE B2 -24 174 1 1 1558 455 213 21 0 chr1 127566993 127567085 -69628347 - B4 SINE B4 -197 95 2 1 1558 606 258 86 0 chr1 127567251 127567402 -69628030 + B3A SINE B2 12 175 -23 1 1558 1036 255 92 29 chr1 127567416 127567731 -69627701 + Lx8 LINE L1 6892 7226 -247 1 1558 288 0 0 0 chr1 127567734 127567766 -69627666 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1558 476 242 158 33 chr1 127567766 127567950 -69627482 + Lx8 LINE L1 7264 7470 -3 1 1558 234 62 0 0 chr1 127568096 127568128 -69627304 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1558 504 291 31 0 chr1 127568135 127568262 -69627170 - B3A SINE B2 -47 151 21 1 1558 249 366 18 0 chr1 127568267 127568379 -69627053 - MIR SINE MIR -49 213 100 1 1558 363 242 0 54 chr1 127568721 127568832 -69626600 + RMER30 DNA MER1_type 7 198 -4 1 1558 450 0 0 0 chr1 127568879 127568929 -69626503 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1558 512 259 27 0 chr1 127568930 127569077 -69626355 - B3A SINE B2 -46 152 2 1 1558 921 243 34 42 chr1 127569077 127569309 -69626123 - B4A SINE B4 -62 230 1 1 1558 332 221 91 0 chr1 127569863 127569940 -69625492 + MIRb SINE MIR 105 188 -80 1 1558 450 36 0 0 chr1 127569943 127569999 -69625433 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 1 1558 573 293 19 19 chr1 127570007 127570167 -69625265 + B3A SINE B2 1 160 -38 1 1558 375 23 0 0 chr1 127570172 127570216 -69625216 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1558 286 310 14 0 chr1 127570299 127570370 -69625062 + B4 SINE B4 219 290 -2 1 1558 315 104 0 0 chr1 127570378 127570426 -69625006 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1558 3057 231 116 39 chr1 127570449 127571749 -69623683 - Lx9 LINE L1 -1307 6337 4879 1 1558 504 199 178 42 chr1 127571759 127572001 -69623431 + MTD LTR MaLR 145 421 0 1 1558 831 253 68 7 chr1 127572287 127572518 -69622914 + ID_B1 SINE B4 2 243 -49 1 1558 612 146 0 0 chr1 127575442 127575545 -69619887 + (GGGA)n Simple_repeat Simple_repeat 4 106 0 1 1558 827 265 33 5 chr1 127575675 127575887 -69619545 + ID_B1 SINE B4 4 221 -3 1 1558 466 303 48 21 chr1 127575922 127576111 -69619321 + B3A SINE B2 2 195 -3 1 1558 448 294 35 7 chr1 127576881 127577025 -69618407 + ID_B1 SINE B4 4 151 -73 1 1558 796 184 41 35 chr1 127577426 127577623 -69617809 - B3A SINE B2 0 198 1 1 1558 393 174 35 28 chr1 127578658 127578800 -69616632 + CT-rich Low_complexity Low_complexity 2 144 0 1 1558 297 0 0 0 chr1 127579270 127579303 -69616129 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1558 576 288 34 0 chr1 127579306 127579452 -69615980 - B3A SINE B2 -47 151 1 1 1558 780 265 26 0 chr1 127579456 127579645 -69615787 - ID_B1 SINE B4 0 224 31 1 1558 254 182 0 0 chr1 127579648 127579703 -69615729 + T-rich Low_complexity Low_complexity 1 55 0 1 1558 22 35 0 0 chr1 127580417 127580446 -69614986 + AT_rich Low_complexity Low_complexity 1 29 0 1 1558 708 192 0 8 chr1 127580449 127580570 -69614862 + PB1D9 SINE Alu 1 120 0 1 1558 480 168 32 0 chr1 127580618 127580713 -69614719 - ID_B1 SINE B4 -119 105 8 1 1558 252 86 0 0 chr1 127581394 127581429 -69614003 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1558 439 243 148 35 chr1 127581442 127581557 -69613875 - B1_Mur3 SINE Alu -21 128 1 1 1558 26 64 0 0 chr1 127581564 127581611 -69613821 + AT_rich Low_complexity Low_complexity 1 47 0 1 1558 234 0 0 0 chr1 127581622 127581648 -69613784 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1558 707 261 0 0 chr1 127581653 127581795 -69613637 - RSINE1 SINE B4 -21 144 3 1 1558 195 184 0 0 chr1 127582293 127582331 -69613101 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1558 703 332 90 4 chr1 127582337 127582603 -69612829 - B4A SINE B4 -3 289 1 1 1558 859 133 47 24 chr1 127582724 127582893 -69612539 + RMER10A LTR ERVL 3 175 -267 1 1558 552 205 49 0 chr1 127582886 127583008 -69612424 + MTEa LTR MaLR 240 367 -12 1 1558 454 238 40 0 chr1 127583149 127583250 -69612182 + RSINE1 SINE B4 1 105 -60 1 1558 183 42 0 0 chr1 127583505 127583529 -69611903 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1558 1074 82 0 0 chr1 127583776 127584088 -69611344 + (GA)n Simple_repeat Simple_repeat 1 312 0 1 1558 918 103 0 0 chr1 127586171 127586307 -69609125 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 1 1558 2038 140 17 17 chr1 127586647 127587009 -69608423 - ORR1C2 LTR MaLR -22 362 1 1 1558 274 282 121 66 chr1 127587009 127587191 -69608241 + MLT1E3 LTR MaLR 102 293 -331 2 1558 222 218 0 0 chr1 127587208 127587263 -69608169 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1558 239 0 0 31 chr1 127587425 127587457 -69607975 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1558 370 183 19 139 chr1 127587640 127587748 -69607684 - RMER5 LTR ERV1 -76 458 364 2 1558 750 113 0 0 chr1 127588352 127588467 -69606965 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1558 297 0 0 0 chr1 127588467 127588500 -69606932 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1558 1580 123 97 10 chr1 127589094 127589382 -69606050 - ORR1A4 LTR MaLR 0 329 17 2 1558 225 245 316 0 chr1 127589545 127589643 -69605789 + MER5A1 DNA MER1_type 1 129 -37 2 1558 450 0 0 0 chr1 127589749 127589799 -69605633 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1558 496 245 105 87 chr1 127589815 127590034 -69605398 - B4 SINE B4 -63 229 7 2 1558 481 294 60 96 chr1 127590220 127590438 -69604994 - MER57C2 LTR ERV1 -222 212 3 2 1558 659 257 63 48 chr1 127590510 127590825 -69604607 + Lx9 LINE L1 5700 6019 -1625 2 1558 477 269 128 10 chr1 127591469 127591660 -69603772 + ID_B1 SINE B4 22 237 -55 2 1558 1060 49 0 7 chr1 127591697 127591841 -69603591 + L1Md_F3 LINE L1 6442 6584 0 2 1558 422 315 54 88 chr1 127592285 127592457 -69602975 - MLT1A0 LTR MaLR 0 365 187 2 1558 1816 175 109 6 chr1 127592457 127592814 -69602618 - ORR1B1 LTR MaLR 0 394 1 2 1558 1608 238 27 0 chr1 127592822 127593187 -69602245 + MTEa LTR MaLR 5 379 0 2 1558 422 315 54 88 chr1 127593187 127593266 -69602166 - MLT1A0 LTR MaLR -179 186 114 2 1558 503 265 99 26 chr1 127594005 127594156 -69601276 - RSINE1 SINE B4 0 165 4 2 1558 586 265 12 6 chr1 127594218 127594381 -69601051 - ID_B1 SINE B4 -52 172 9 2 1558 198 0 0 0 chr1 127594972 127594994 -69600438 + (CAGGA)n Simple_repeat Simple_repeat 4 25 0 2 1558 853 248 67 0 chr1 127595022 127595232 -69600200 + B4A SINE B4 2 225 -67 2 1558 1376 194 83 74 chr1 127595234 127595680 -69599752 + Lx7 LINE L1 7247 7696 0 2 1558 381 269 37 0 chr1 127596740 127596848 -69598584 + Lx8 LINE L1 7154 7265 -208 2 1558 234 222 63 0 chr1 127596849 127596912 -69598520 + RMER15 LTR ERVL 403 469 -106 2 1558 330 225 38 0 chr1 127598129 127598209 -69597223 - MTD LTR MaLR -2 417 335 2 1558 489 34 0 0 chr1 127598314 127598373 -69597059 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1558 22 0 0 0 chr1 127598870 127598892 -69596540 + AT_rich Low_complexity Low_complexity 1 22 0 2 1558 200 184 0 0 chr1 127599539 127599577 -69595855 + C-rich Low_complexity Low_complexity 1 38 0 2 1558 726 232 77 10 chr1 127599587 127599783 -69595649 - ID_B1 SINE B4 -15 209 1 2 1558 3482 174 69 15 chr1 127600398 127601484 -69593948 - L1_Mur2 LINE L1 -3963 1923 788 2 1558 595 252 219 28 chr1 127601949 127602247 -69593185 - MTEa LTR MaLR 0 379 25 2 1558 637 208 16 0 chr1 127602530 127602655 -69592777 - B1F2 SINE Alu -7 142 16 2 1558 1099 237 89 4 chr1 127602768 127603113 -69592319 - MTD LTR MaLR -14 405 5 2 1558 462 18 0 0 chr1 127603830 127603885 -69591547 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1558 429 279 45 7 chr1 127604457 127604612 -69590820 + MamRep137 DNA TcMar? 18 178 -266 2 1558 306 0 0 0 chr1 127604754 127604788 -69590644 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1558 271 291 215 48 chr1 127605133 127605342 -69590090 + RMER15 LTR ERVL 296 539 -36 2 1558 255 242 81 38 chr1 127605536 127605746 -69589686 + Zaphod DNA Tip100 643 861 -3170 2 1558 393 284 137 70 chr1 127605879 127606081 -69589351 + Zaphod DNA Tip100 3648 3876 -155 2 1558 289 233 0 0 chr1 127606081 127606141 -69589291 - ID4 SINE ID -19 64 5 2 1558 393 284 137 70 chr1 127606141 127606267 -69589165 + Zaphod DNA Tip100 3877 3998 -33 2 1558 416 156 11 0 chr1 127606862 127606952 -69588480 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1558 770 314 50 11 chr1 127606956 127607236 -69588196 - B4A SINE B4 0 292 2 2 1558 783 287 0 28 chr1 127607620 127607835 -69587597 + B4 SINE B4 20 228 -64 2 1558 830 216 0 0 chr1 127607835 127607983 -69587449 + B1_Mur2 SINE Alu 1 148 -1 2 1558 246 128 0 0 chr1 127608056 127608095 -69587337 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1558 333 0 0 0 chr1 127608095 127608131 -69587301 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1558 198 0 0 0 chr1 127608131 127608152 -69587280 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1558 200 234 0 21 chr1 127608471 127608519 -69586913 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2 1558 276 261 0 0 chr1 127608532 127608597 -69586835 - RSINE1 SINE B4 -23 142 78 2 1558 528 254 29 7 chr1 127609228 127609367 -69586065 + MTEa LTR MaLR 23 164 -215 2 1558 237 277 15 0 chr1 127609386 127609451 -69585981 + CT-rich Low_complexity Low_complexity 1 66 0 2 1558 744 234 11 17 chr1 127609451 127609629 -69585803 + MTEa LTR MaLR 201 377 -2 2 1558 641 291 2 48 chr1 127610229 127610434 -69584998 + B3A SINE B2 20 215 -1 2 1558 1405 68 6 0 chr1 127610462 127610639 -69584793 + B2_Mm1a SINE B2 2 179 -14 2 1558 283 287 48 29 chr1 127610674 127610778 -69584654 - B4 SINE B4 -185 107 2 2 1558 463 297 108 5 chr1 127611310 127611496 -69583936 + ID_B1 SINE B4 17 221 -3 2 1558 421 294 87 6 chr1 127611497 127611658 -69583774 + B3A SINE B2 10 183 -15 2 1558 233 335 28 83 chr1 127611910 127612128 -69583304 - MER110A LTR ERV1 -10 458 253 2 1558 606 251 48 32 chr1 127612226 127612415 -69583017 + ID_B1 SINE B4 2 193 -31 2 1558 543 270 5 97 chr1 127612482 127612699 -69582733 - B3A SINE B2 0 198 2 2 1558 616 250 13 7 chr1 127613146 127613295 -69582137 + B3A SINE B2 3 152 -46 2 1558 777 287 46 34 chr1 127614366 127614629 -69580803 - B4 SINE B4 -23 269 4 2 1558 657 207 7 7 chr1 127615112 127615248 -69580184 + B1_Mur2 SINE Alu 9 144 -5 2 1558 680 281 2 5 chr1 127615410 127615612 -69579820 - B3A SINE B2 -16 200 2 2 1558 824 224 35 0 chr1 127616210 127616384 -69579048 - B3A SINE B2 -18 180 1 2 1558 605 274 134 63 chr1 127617104 127617211 -69578221 + MTD LTR MaLR 12 114 -305 2 1558 2509 40 7 0 chr1 127617211 127617513 -69577919 - L1Md_F3 LINE L1 -1 6583 6280 2 1558 605 274 134 63 chr1 127617513 127617755 -69577677 + MTD LTR MaLR 115 386 -33 2 1558 1087 283 62 17 chr1 127617829 127618181 -69577251 - MTEa LTR MaLR -10 369 2 2 1558 228 274 0 78 chr1 127618688 127618791 -69576641 + MTEb LTR MaLR 278 372 -7 2 1558 26 64 0 0 chr1 127618873 127618920 -69576512 + AT_rich Low_complexity Low_complexity 1 47 0 2 1558 721 253 0 71 chr1 127618958 127619154 -69576278 - B3A SINE B2 -16 182 1 2 1558 683 188 72 20 chr1 127619219 127619371 -69576061 - B3A SINE B2 -36 162 3 2 1558 490 325 101 19 chr1 127620389 127620706 -69574726 - L1MA4 LINE L1 -464 5836 5494 2 1558 534 173 0 0 chr1 127621300 127621404 -69574028 + (TATG)n Simple_repeat Simple_repeat 4 107 0 2 1558 351 60 0 0 chr1 127621450 127621500 -69573932 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 1558 361 309 28 9 chr1 127621513 127621621 -69573811 - B4 SINE B4 -102 190 81 2 1558 611 272 179 21 chr1 127621664 127621904 -69573528 - B4 SINE B4 -13 279 2 2 1558 386 253 0 0 chr1 127621915 127621998 -69573434 - B4 SINE B4 -209 83 1 2 1558 258 111 0 73 chr1 127622597 127622665 -69572767 + CT-rich Low_complexity Low_complexity 5 67 0 2 1558 253 296 76 53 chr1 127622838 127622970 -69572462 - LTR53 LTR ERVL -372 147 13 2 1558 265 304 49 82 chr1 127623070 127623314 -69572118 + MIRb SINE MIR 3 238 -30 2 1558 240 322 42 0 chr1 127623434 127623552 -69571880 + (TCCA)n Simple_repeat Simple_repeat 2 124 0 2 1558 943 273 50 22 chr1 127624460 127624737 -69570695 + B4A SINE B4 2 286 -6 2 1558 507 230 0 28 chr1 127625187 127625366 -69570066 + G-rich Low_complexity Low_complexity 5 178 0 2 1558 1055 163 172 104 chr1 127625475 127625859 -69569573 + RMER17C LTR ERVK 1 410 0 2 1558 393 39 0 0 chr1 127626009 127626060 -69569372 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1558 796 331 10 47 chr1 127626068 127626369 -69569063 - B4A SINE B4 0 292 3 2 1558 3451 85 6 13 chr1 127627583 127628217 -69567215 + L1_Mus3 LINE L1 6150 6638 0 2 1558 924 224 63 0 chr1 127628722 127628927 -69566505 - Lx8 LINE L1 -677 6796 6579 2 1558 472 336 72 24 chr1 127628931 127629181 -69566251 - ERVL-E-int LTR ERVL -3404 2263 2002 2 1558 242 273 0 0 chr1 127629670 127629725 -69565707 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1558 765 281 111 98 chr1 127630432 127630791 -69564641 - MTE2a LTR MaLR -15 364 1 2 1558 186 71 0 0 chr1 127631097 127631125 -69564307 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1558 753 286 149 12 chr1 127631141 127631396 -69564036 - B4 SINE B4 -2 290 1 2 1558 552 15 0 0 chr1 127632468 127632533 -69562899 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1558 1340 229 52 35 chr1 127632598 127632964 -69562468 + MTE2b LTR MaLR 6 377 -2 2 1558 611 301 8 102 chr1 127632967 127633111 -69562321 - B4 SINE B4 -60 232 92 2 1558 1011 124 6 11 chr1 127633111 127633290 -69562142 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 2 1558 611 301 8 102 chr1 127633290 127633400 -69562032 - B4 SINE B4 -201 91 2 2 1558 1011 276 85 30 chr1 127634186 127634552 -69560880 - MTD LTR MaLR -16 403 18 2 1558 2203 189 66 22 chr1 127634561 127635058 -69560374 - RLTR28 LTR ERVL 0 524 6 2 1558 742 284 36 76 chr1 127635053 127635304 -69560128 + MTE2a LTR MaLR 56 296 -83 2 1558 396 0 0 0 chr1 127635318 127635362 -69560070 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1558 474 248 12 77 chr1 127635804 127635974 -69559458 - B3A SINE B2 -2 196 38 2 1558 1727 291 81 18 chr1 127636035 127636158 -69559274 - Lx8 LINE L1 -2 7471 7342 3 1558 457 99 25 0 chr1 127636158 127636239 -69559193 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 3 1558 1727 291 81 18 chr1 127636239 127636258 -69559174 - Lx8 LINE L1 -132 7341 7317 3 1558 332 43 22 0 chr1 127636258 127636304 -69559128 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1558 1727 291 81 18 chr1 127636304 127636776 -69558656 - Lx8 LINE L1 -157 7316 6819 3 1558 1057 237 23 0 chr1 127637021 127637236 -69558196 - ID_B1 SINE B4 0 224 5 3 1558 372 133 0 0 chr1 127637290 127637350 -69558082 + (TTAG)n Simple_repeat Simple_repeat 1 60 0 3 1558 320 306 62 9 chr1 127637355 127637467 -69557965 - RSINE1 SINE B4 -43 122 5 3 1558 257 302 53 62 chr1 127637922 127638035 -69557397 - B4 SINE B4 -117 175 64 3 1558 474 131 10 20 chr1 127638500 127638601 -69556831 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 1558 2374 90 6 47 chr1 127638601 127638940 -69556492 - ORR1A2 LTR MaLR 0 327 3 3 1558 315 304 26 0 chr1 127639031 127639146 -69556286 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 3 1558 302 206 19 0 chr1 127639148 127639255 -69556177 + (TATG)n Simple_repeat Simple_repeat 3 111 0 3 1558 332 278 61 10 chr1 127639748 127639846 -69555586 + B3 SINE B2 114 216 0 3 1558 439 303 106 64 chr1 127639974 127640186 -69555246 - Tigger7 DNA MER2_type -2174 317 92 3 1558 422 79 16 0 chr1 127640186 127640249 -69555183 + (TTA)n Simple_repeat Simple_repeat 2 65 0 3 1558 439 303 106 64 chr1 127640249 127640260 -69555172 - Tigger7 DNA MER2_type -2400 91 83 3 1558 556 258 51 19 chr1 127640260 127640418 -69555014 - RSINE1 SINE B4 0 165 3 3 1558 439 303 106 64 chr1 127640418 127640475 -69554957 - Tigger7 DNA MER2_type -2409 82 24 3 1558 23 0 0 0 chr1 127640914 127640937 -69554495 + AT_rich Low_complexity Low_complexity 1 23 0 3 1558 1001 191 10 5 chr1 127641011 127641206 -69554226 + MTD LTR MaLR 1 196 -223 3 1558 210 37 0 0 chr1 127641764 127641791 -69553641 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1558 922 255 64 39 chr1 127642286 127642568 -69552864 - B4 SINE B4 -2 290 2 3 1558 545 243 189 0 chr1 127643102 127643287 -69552145 - ID_B1 SINE B4 0 224 5 3 1558 863 244 13 35 chr1 127643662 127643674 -69551758 - ID_B1 SINE B4 0 224 213 3 1558 459 0 0 0 chr1 127643674 127643725 -69551707 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 3 1558 863 244 13 35 chr1 127643725 127643941 -69551491 - ID_B1 SINE B4 -12 212 1 3 1558 268 277 0 122 chr1 127644436 127644551 -69550881 - B3A SINE B2 0 198 98 3 1558 489 288 72 0 chr1 127644608 127644761 -69550671 - RSINE1 SINE B4 0 165 2 3 1558 2589 186 8 23 chr1 127645345 127645877 -69549555 + RLTR28 LTR ERVL 1 524 0 3 1558 339 44 0 0 chr1 127646284 127646329 -69549103 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1558 762 306 79 54 chr1 127646743 127647150 -69548282 + MTD LTR MaLR 1 417 -2 3 1558 451 247 189 6 chr1 127647164 127647323 -69548109 + ID_B1 SINE B4 37 224 0 3 1558 892 297 12 8 chr1 127648289 127648540 -69546892 - B4 SINE B4 -40 252 1 3 1558 27 0 0 0 chr1 127648554 127648581 -69546851 + AT_rich Low_complexity Low_complexity 1 27 0 3 1558 455 108 223 11 chr1 127648759 127648853 -69546579 - B3 SINE B2 -102 114 1 3 1558 890 263 139 4 chr1 127649170 127649422 -69546010 + B4A SINE B4 1 286 -6 3 1558 337 122 13 13 chr1 127649435 127649510 -69545922 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1558 1520 233 145 3 chr1 127649840 127650206 -69545226 + MTD LTR MaLR 1 418 -1 3 1558 1450 224 76 14 chr1 127650804 127651161 -69544271 + MTEa LTR MaLR 1 379 0 3 1558 4491 174 32 113 chr1 127651452 127652451 -69542981 - RMER1A Other Other 0 1030 113 3 1558 386 206 28 9 chr1 127652492 127652600 -69542832 - Lx5 LINE L1 0 7050 6941 3 1558 3721 154 66 2 chr1 127652600 127653235 -69542197 - Lx5 LINE L1 -446 6604 5929 3 1558 321 229 0 0 chr1 127653235 127653296 -69542136 - Lx8 LINE L1 -873 6600 6540 3 1558 864 196 152 46 chr1 127653648 127653807 -69541625 + ORR1C2 LTR MaLR 17 195 -189 3 1558 246 32 0 0 chr1 127653807 127653838 -69541594 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1558 864 196 152 46 chr1 127653838 127653961 -69541471 + ORR1C2 LTR MaLR 196 329 -55 3 1558 6980 93 48 4 chr1 127653961 127655566 -69539866 - L1_Mus3 LINE L1 -5 6633 4961 3 1558 440 151 0 0 chr1 127655567 127655640 -69539792 + ORR1C2 LTR MaLR 312 384 0 3 1558 688 276 100 49 chr1 127655705 127656075 -69539357 - MTD LTR MaLR -14 405 17 3 1558 3440 35 2 0 chr1 127656082 127656477 -69538955 + MTA_Mm LTR MaLR 1 396 0 3 1558 321 26 0 0 chr1 127657616 127657654 -69537778 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1558 576 0 0 0 chr1 127657654 127657717 -69537715 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1558 305 239 35 41 chr1 127657728 127657898 -69537534 + (CAGAGA)n Simple_repeat Simple_repeat 6 174 0 3 1558 231 103 0 0 chr1 127657899 127657938 -69537494 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1558 792 0 0 0 chr1 127657938 127658025 -69537407 + (GGGAGA)n Simple_repeat Simple_repeat 4 91 0 3 1558 338 275 165 50 chr1 127658038 127658298 -69537134 - B4A SINE B4 0 292 3 3 1558 23 86 0 0 chr1 127658487 127658545 -69536887 + AT_rich Low_complexity Low_complexity 1 58 0 3 1558 524 248 24 60 chr1 127659241 127659408 -69536024 - B4 SINE B4 -69 223 63 3 1558 494 151 8 32 chr1 127659573 127659696 -69535736 + CT-rich Low_complexity Low_complexity 1 120 0 3 1558 706 245 92 15 chr1 127659696 127659891 -69535541 - ID_B1 SINE B4 -13 211 2 3 1558 649 283 73 80 chr1 127659948 127660813 -69534619 - L1_Rod LINE L1 -2687 3456 2587 3 1558 378 0 0 0 chr1 127660830 127660872 -69534560 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1558 423 0 0 0 chr1 127660872 127660918 -69534514 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1558 403 269 127 7 chr1 127660928 127661023 -69534409 - MTE2b LTR MaLR -9 370 275 3 1558 212 0 0 35 chr1 127661023 127661052 -69534380 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 3 1558 454 293 44 49 chr1 127661052 127661239 -69534193 - MTE2b LTR MaLR -105 274 1 3 1558 220 238 12 12 chr1 127661607 127661692 -69533740 + CT-rich Low_complexity Low_complexity 1 85 0 3 1558 909 252 9 0 chr1 127661713 127661927 -69533505 - ID_B1 SINE B4 -3 221 6 3 1558 486 280 0 0 chr1 127662615 127662733 -69532699 - B4 SINE B4 -87 205 88 3 1558 558 0 0 0 chr1 127662740 127662802 -69532630 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1558 3821 47 24 2 chr1 127662813 127663278 -69532154 - MT2C_Mm LTR ERVL 0 475 1 3 1558 285 128 0 0 chr1 127663488 127663535 -69531897 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1558 484 338 97 74 chr1 127663561 127663954 -69531478 - MER70B LTR ERVL -133 445 44 3 194 657 296 32 29 chr1 127664070 127664348 -69531084 - B4 SINE B4 -11 281 3 3 1559 429 329 94 0 chr1 127664354 127664524 -69530908 - ID_B1 SINE B4 -9 215 30 3 1559 1432 292 41 26 chr1 127664617 127665300 -69530132 + Charlie21a DNA MER1_type 386 1078 -135 3 1559 260 280 109 43 chr1 127665694 127665832 -69529600 - MLT1H2 LTR MaLR -54 435 289 3 1559 1135 216 205 6 chr1 127666373 127666685 -69528747 - MTE2a LTR MaLR -1 378 5 3 1559 445 191 0 0 chr1 127666890 127666979 -69528453 + CT-rich Low_complexity Low_complexity 1 89 0 3 1559 702 137 23 11 chr1 127666979 127667156 -69528276 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1559 240 163 0 0 chr1 127667171 127667214 -69528218 + CT-rich Low_complexity Low_complexity 2 44 0 3 1559 337 344 98 0 chr1 127667284 127667406 -69528026 - B4A SINE B4 -2 290 157 3 1559 279 262 148 12 chr1 127667417 127667498 -69527934 - B4A SINE B4 -199 93 2 3 1559 2197 266 76 29 chr1 127667665 127668390 -69527042 + Lx8 LINE L1 6715 7473 0 3 1559 340 125 0 35 chr1 127668929 127668987 -69526445 - HAL1-3A_ME LINE L1 -828 2030 1975 3 1559 880 300 11 49 chr1 127669055 127669081 -69526351 - B4 SINE B4 0 292 271 3 1559 878 85 0 8 chr1 127669081 127669211 -69526221 + (TA)n Simple_repeat Simple_repeat 2 130 0 3 1559 880 300 11 49 chr1 127669211 127669447 -69525985 - B4 SINE B4 -22 270 40 3 1559 629 198 47 114 chr1 127669492 127669703 -69525729 - B3A SINE B2 0 198 2 3 1559 299 315 54 124 chr1 127670537 127670559 -69524873 - B2_Mm2 SINE B2 -10 185 166 3 1559 387 0 0 0 chr1 127670559 127670602 -69524830 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1559 496 292 26 96 chr1 127670602 127670764 -69524668 - B3A SINE B2 -30 165 14 3 1559 249 333 0 0 chr1 127670820 127670892 -69524540 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1559 897 303 65 14 chr1 127670962 127671240 -69524192 - B4A SINE B4 0 292 1 3 1559 270 305 98 38 chr1 127671251 127671384 -69524048 - B1F2 SINE Alu -8 141 1 3 1559 740 279 21 17 chr1 127671474 127671707 -69523725 - MER33 DNA MER1_type -85 239 6 3 1559 289 250 0 77 chr1 127672014 127672092 -69523340 + B4A SINE B4 3 74 -218 3 1559 248 339 115 9 chr1 127672125 127672238 -69523194 + B4A SINE B4 150 274 -18 3 1559 414 0 0 0 chr1 127672241 127672287 -69523145 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1559 28 0 0 0 chr1 127672326 127672354 -69523078 + AT_rich Low_complexity Low_complexity 1 28 0 3 1559 1080 248 132 19 chr1 127672986 127673356 -69522076 - MTD LTR MaLR -2 417 1 3 1559 603 308 39 32 chr1 127673375 127673660 -69521772 - B4A SINE B4 -4 288 2 3 1559 237 267 107 41 chr1 127674113 127674234 -69521198 - MLT1J LTR MaLR 0 512 384 3 1559 1353 249 60 6 chr1 127674634 127674985 -69520447 - MTEb LTR MaLR -9 370 1 3 1559 622 311 13 0 chr1 127675181 127675332 -69520100 + ID_B1 SINE B4 2 154 -70 3 1559 705 225 117 64 chr1 127676144 127676312 -69519120 + B4A SINE B4 2 171 -121 3 1559 630 39 0 0 chr1 127676312 127676389 -69519043 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 3 1559 705 225 117 64 chr1 127676389 127676486 -69518946 + B4A SINE B4 172 280 -12 3 1559 323 314 30 16 chr1 127676496 127676648 -69518784 - MIRb SINE MIR -70 198 43 3 1559 227 298 104 68 chr1 127677013 127677233 -69518199 - Charlie18a DNA MER1_type -54 288 61 3 1559 1143 232 24 37 chr1 127677513 127677809 -69517623 + B4 SINE B4 1 292 0 3 1559 267 31 0 0 chr1 127677824 127677856 -69517576 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1559 297 0 0 0 chr1 127677856 127677889 -69517543 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1559 587 272 74 31 chr1 127678521 127678684 -69516748 + B3A SINE B2 2 171 -27 4 1559 360 0 0 0 chr1 127678688 127678728 -69516704 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1559 287 246 16 0 chr1 127678798 127678859 -69516573 - RMER15 LTR ERVL -111 464 403 4 1559 421 301 9 9 chr1 127678861 127678975 -69516457 - Lx8 LINE L1 -209 7264 7151 4 1559 8438 11 21 1 chr1 127679034 127680025 -69515407 - MTA_Mm-int LTR MaLR -87 1011 1 4 1559 3498 25 2 0 chr1 127680025 127680420 -69515012 - MTA_Mm LTR MaLR 0 396 1 4 1559 221 194 0 0 chr1 127680420 127680456 -69514976 - ID4_ SINE ID -43 40 5 4 1559 1076 316 47 12 chr1 127680663 127681003 -69514429 + ORR1E LTR MaLR 8 359 0 4 1559 1252 229 121 16 chr1 127681008 127681372 -69514060 - MTD LTR MaLR 0 419 18 4 1559 537 272 36 14 chr1 127681716 127681854 -69513578 - RSINE1 SINE B4 0 165 25 4 1559 827 258 56 0 chr1 127682026 127682224 -69513208 - ID_B1 SINE B4 -15 209 1 4 1559 375 41 0 0 chr1 127682792 127682841 -69512591 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1559 1469 179 151 21 chr1 127682859 127682915 -69512517 - ORR1D1 LTR MaLR 0 374 315 4 1559 243 0 0 0 chr1 127682915 127682942 -69512490 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1559 1469 179 151 21 chr1 127682942 127683216 -69512216 - ORR1D1 LTR MaLR -60 314 1 4 1559 423 0 0 0 chr1 127683248 127683295 -69512137 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1559 678 347 30 19 chr1 127683303 127683570 -69511862 - B4 SINE B4 -18 274 5 4 1559 446 298 12 127 chr1 127684806 127684979 -69510453 - B4A SINE B4 -121 171 19 4 1559 289 266 70 17 chr1 127685035 127685150 -69510282 - MER5A1 DNA MER1_type -45 121 1 4 1559 266 277 62 0 chr1 127687855 127687975 -69507457 + MIRc SINE MIR 104 241 -27 4 1559 291 54 0 0 chr1 127688185 127688222 -69507210 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1559 491 258 187 50 chr1 127688383 127688624 -69506808 - B4A SINE B4 -18 274 1 4 1559 225 308 46 0 chr1 127688776 127688841 -69506591 + ID4_ SINE ID 1 68 -15 4 1559 675 270 82 67 chr1 127689205 127689394 -69506038 + B4 SINE B4 8 195 -97 4 1559 237 65 0 0 chr1 127689394 127689425 -69506007 + (TAA)n Simple_repeat Simple_repeat 2 32 0 4 1559 675 286 67 52 chr1 127689425 127689527 -69505905 + B4 SINE B4 82 280 -12 4 1559 489 76 0 0 chr1 127689532 127689598 -69505834 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1559 1000 212 45 33 chr1 127690091 127690335 -69505097 + B4 SINE B4 2 248 -44 4 1559 773 11 11 0 chr1 127690358 127690452 -69504980 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1559 361 284 91 38 chr1 127690532 127690741 -69504691 - MLT1G1 LTR MaLR -259 320 101 4 1559 1136 273 58 58 chr1 127690782 127691182 -69504250 - MTD LTR MaLR -15 404 5 4 1559 545 289 44 0 chr1 127691359 127691518 -69503914 - MER5A DNA MER1_type 0 189 24 4 1559 843 305 10 0 chr1 127692550 127692753 -69502679 + B3 SINE B2 7 211 -5 4 1559 586 296 43 6 chr1 127693778 127693941 -69501491 - MLT2B4 LTR ERVL -96 460 292 4 1559 398 302 124 51 chr1 127693944 127694122 -69501310 - RMER30 DNA MER1_type -2 200 10 4 1559 383 365 86 9 chr1 127694131 127694341 -69501091 - MLT2B4 LTR ERVL -288 268 43 4 1559 207 345 11 33 chr1 127694377 127694467 -69500965 + MER5B DNA MER1_type 75 162 -16 4 1559 361 362 22 67 chr1 127694474 127694699 -69500733 + L2 LINE L2 2739 2953 -466 4 1559 891 243 53 35 chr1 127695659 127695726 -69499706 + MTE2a LTR MaLR 2 68 -311 4 1559 270 56 0 0 chr1 127695726 127695762 -69499670 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1559 891 243 53 35 chr1 127695762 127695920 -69499512 + MTE2a LTR MaLR 69 230 -149 4 1559 642 297 130 25 chr1 127696274 127696512 -69498920 + B4A SINE B4 30 292 0 4 1559 300 245 18 73 chr1 127696565 127696675 -69498757 + ID_B1 SINE B4 46 149 -75 4 1559 363 229 0 0 chr1 127697405 127697475 -69497957 + ID SINE ID 1 70 -154 4 1559 259 326 42 98 chr1 127697650 127697793 -69497639 + MLT1L LTR MaLR 302 436 -174 4 1559 244 217 33 0 chr1 127697844 127697904 -69497528 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 1559 482 298 73 61 chr1 127697924 127698171 -69497261 - B4A SINE B4 -10 282 33 4 1559 845 243 67 19 chr1 127698305 127698515 -69496917 - MTEa LTR MaLR -3 376 157 4 1559 354 300 10 20 chr1 127698778 127698880 -69496552 + RSINE1 SINE B4 37 137 -28 4 1559 542 259 145 0 chr1 127698937 127699068 -69496364 + B4A SINE B4 83 232 -60 4 1559 297 0 0 0 chr1 127699083 127699116 -69496316 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1559 1129 268 67 8 chr1 127699879 127700237 -69495195 + MTEa LTR MaLR 1 379 0 4 1559 780 236 98 20 chr1 127700946 127701149 -69494283 + B4 SINE B4 2 220 -72 4 1559 891 294 32 4 chr1 127701233 127701510 -69493922 - B4 SINE B4 -4 288 4 4 1559 646 295 6 11 chr1 127701755 127701930 -69493502 + B3A SINE B2 19 192 -6 4 1559 608 203 68 0 chr1 127702011 127702144 -69493288 + B1_Mur2 SINE Alu 3 144 -5 4 1559 309 0 57 38 chr1 127702257 127702310 -69493122 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1559 1332 234 78 16 chr1 127702392 127702713 -69492719 + MTE2a LTR MaLR 3 343 -36 4 1559 505 249 162 15 chr1 127702740 127703140 -69492292 - L1MD LINE L1 -2592 3554 3096 4 1559 644 276 33 7 chr1 127703180 127703333 -69492099 - RSINE1 SINE B4 -7 158 2 4 1559 378 327 85 128 chr1 127703401 127703706 -69491726 - B4A SINE B4 0 292 1 4 1559 1255 249 93 24 chr1 127703785 127704246 -69491186 - L1MD LINE L1 -3182 2964 2472 4 1559 893 150 30 24 chr1 127704595 127704759 -69490673 - URR1B DNA MER1_type -11 214 50 4 1559 225 191 43 0 chr1 127704780 127704827 -69490605 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1559 406 235 40 20 chr1 127704827 127704927 -69490505 - RMER12 LTR ERVK -466 856 755 4 1559 651 13 0 0 chr1 127705596 127705672 -69489760 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1559 6030 205 18 48 chr1 127705969 127707237 -69488195 + Lx7 LINE L1 6271 7500 -196 4 1559 1074 102 6 20 chr1 127707214 127707403 -69488029 - L1_Mm LINE L1 -3716 2161 1985 4 1559 1529 240 22 82 chr1 127707493 127707893 -69487539 - MTEa LTR MaLR 0 379 4 4 1559 811 291 10 0 chr1 127709409 127709615 -69485817 - ID_B1 SINE B4 -9 215 8 4 1559 439 287 48 27 chr1 127710377 127710524 -69484908 + RSINE1 SINE B4 2 151 -14 4 1559 524 312 34 40 chr1 127711175 127711255 -69484177 + ID SINE ID 1 79 -145 4 1559 273 273 137 60 chr1 127711255 127711372 -69484060 + B1_Mm SINE Alu 1 126 -21 4 1559 579 315 30 95 chr1 127711455 127711760 -69483672 - B4A SINE B4 0 292 8 4 1559 482 279 97 45 chr1 127711879 127712033 -69483399 - RSINE1 SINE B4 -1 164 3 4 1559 648 282 133 5 chr1 127712517 127712713 -69482719 + B4 SINE B4 70 290 -2 4 1559 417 20 0 0 chr1 127712732 127712782 -69482650 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1559 1621 323 70 52 chr1 127712938 127713067 -69482365 - Lx9 LINE L1 -3 7470 7336 4 1559 405 0 0 0 chr1 127713067 127713112 -69482320 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1559 4065 236 43 24 chr1 127713112 127714128 -69481304 - Lx9 LINE L1 -173 7471 6305 4 1559 688 332 150 47 chr1 127714135 127714703 -69480729 - MLT1G LTR MaLR 0 595 1 4 1559 864 237 183 56 chr1 127715499 127715821 -69479611 - MTEa LTR MaLR -4 375 13 4 1559 822 211 108 21 chr1 127716307 127716501 -69478931 + B3 SINE B2 2 212 -4 4 1559 555 257 68 0 chr1 127716533 127716681 -69478751 + RSINE1 SINE B4 3 160 -5 4 1559 1033 291 7 50 chr1 127717094 127717373 -69478059 + B4 SINE B4 25 291 -1 4 1559 302 236 60 94 chr1 127717532 127717649 -69477783 - MamRep605 Unknown Unknown -174 702 590 4 1559 265 299 84 79 chr1 127717754 127717957 -69477475 - L1MD LINE L1 -2265 5730 5527 4 1559 1398 212 60 69 chr1 127717983 127718333 -69477099 + MTE2b LTR MaLR 29 375 -4 4 1559 459 0 0 0 chr1 127718400 127718451 -69476981 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1559 371 38 19 0 chr1 127718451 127718503 -69476929 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1559 245 180 16 32 chr1 127718825 127718888 -69476544 + GA-rich Low_complexity Low_complexity 1 62 0 4 1559 240 148 16 32 chr1 127718888 127718951 -69476481 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1559 707 92 9 0 chr1 127719605 127719714 -69475718 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 4 1559 584 333 21 16 chr1 127719736 127719925 -69475507 - ID_B1 SINE B4 -33 191 2 4 1559 700 282 199 42 chr1 127720941 127721248 -69474184 + MTD LTR MaLR 1 355 -64 4 1559 793 222 34 11 chr1 127721293 127721471 -69473961 + RMER5 LTR ERV1 353 534 0 4 1559 717 12 0 0 chr1 127722111 127722193 -69473239 + (CCTG)n Simple_repeat Simple_repeat 4 85 0 4 1559 325 62 0 20 chr1 127722452 127722501 -69472931 - HAL1-3A_ME LINE L1 -836 2022 1975 4 1559 642 211 0 0 chr1 127722529 127722704 -69472728 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1559 689 254 93 82 chr1 127722739 127722806 -69472626 - B4A SINE B4 -6 286 230 4 1559 764 218 68 15 chr1 127722806 127723011 -69472421 - B3 SINE B2 0 216 1 4 1559 689 254 93 82 chr1 127723011 127723200 -69472232 - B4A SINE B4 -63 229 27 4 1559 542 311 87 56 chr1 127723857 127724249 -69471183 + MTD LTR MaLR 1 404 -15 4 1559 287 256 4 8 chr1 127724253 127724349 -69471083 + MTEa LTR MaLR 8 102 -277 4 1559 441 257 14 48 chr1 127724418 127724565 -69470867 + MTEa LTR MaLR 231 372 -7 4 1559 4183 169 112 15 chr1 127724656 127725498 -69469934 - Lx5 LINE L1 -3 7047 6125 4 1559 3176 130 17 15 chr1 127725504 127726053 -69469379 + Lx5 LINE L1 5543 6098 -952 4 1559 211 219 77 64 chr1 127726160 127726238 -69469194 - B3 SINE B2 -137 79 1 4 1559 204 267 17 0 chr1 127726324 127726384 -69469048 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1559 514 240 133 0 chr1 127726421 127726571 -69468861 - ID_B1 SINE B4 -3 221 52 4 1559 2015 176 51 0 chr1 127726588 127726979 -69468453 - MTD LTR MaLR -8 411 1 5 1559 180 388 19 10 chr1 127727935 127728039 -69467393 - L2b LINE L2 -220 3155 3051 5 1559 378 107 0 0 chr1 127728225 127728281 -69467151 + (T)n Simple_repeat Simple_repeat 1 56 0 5 1559 312 269 111 0 chr1 127728281 127728389 -69467043 - PB1D9 SINE Alu 0 120 1 5 1559 523 296 61 88 chr1 127728390 127728720 -69466712 + ORR1E LTR MaLR 6 326 -33 5 1559 268 299 61 61 chr1 127728740 127728904 -69466528 - MIR SINE MIR -93 169 6 5 1559 707 249 162 16 chr1 127729336 127729589 -69465843 - B4 SINE B4 0 292 3 5 1559 631 176 87 81 chr1 127730198 127730383 -69465049 - MTE2b LTR MaLR 0 379 194 5 1559 581 40 13 0 chr1 127730475 127730551 -69464881 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1559 295 197 57 42 chr1 127730564 127730639 -69464793 - ID2 SINE ID -6 77 1 5 1559 560 321 110 20 chr1 127731024 127731278 -69464154 + B4A SINE B4 1 277 -15 5 1559 649 295 71 53 chr1 127731576 127732007 -69463425 + MTE2a LTR MaLR 1 398 -21 5 1559 686 239 97 74 chr1 127732503 127732720 -69462712 + B4 SINE B4 2 223 -69 5 1559 306 0 0 0 chr1 127732743 127732777 -69462655 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1559 934 224 48 5 chr1 127733026 127733232 -69462200 + B3 SINE B2 2 216 0 5 1559 259 241 58 35 chr1 127733413 127733499 -69461933 + MLT1H1 LTR MaLR 283 370 -185 5 1559 810 303 18 29 chr1 127733700 127733979 -69461453 + B4A SINE B4 1 276 -16 5 1559 698 280 0 7 chr1 127734955 127735106 -69460326 - RSINE1 SINE B4 -14 151 2 5 1559 204 40 0 0 chr1 127736254 127736279 -69459153 + (GAA)n Simple_repeat Simple_repeat 3 27 0 5 1559 222 37 0 0 chr1 127736510 127736537 -69458895 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1559 290 219 122 20 chr1 127737118 127737216 -69458216 + B3A SINE B2 3 110 -88 5 1559 352 259 121 23 chr1 127737216 127737354 -69458078 + B4A SINE B4 3 272 -20 5 1559 603 0 0 0 chr1 127737494 127737561 -69457871 + (TTC)n Simple_repeat Simple_repeat 1 67 0 5 1559 535 211 153 12 chr1 127738912 127738965 -69456467 - MTE2b LTR MaLR 0 379 325 5 1559 636 14 0 0 chr1 127738965 127739038 -69456394 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1559 535 211 153 12 chr1 127739038 127739147 -69456285 - MTE2b LTR MaLR -55 324 194 5 1559 216 299 15 0 chr1 127739155 127739222 -69456210 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 5 1559 706 289 14 19 chr1 127739278 127739486 -69455946 - B4A SINE B4 -82 210 4 5 1559 1022 135 6 0 chr1 127739599 127739777 -69455655 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 5 1559 186 103 0 0 chr1 127740193 127740222 -69455210 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1559 389 268 0 20 chr1 127740243 127740342 -69455090 - RSINE1 SINE B4 -66 99 3 5 1559 559 294 0 22 chr1 127740939 127741078 -69454354 + B1_Mur1 SINE Alu 1 136 -13 5 1559 416 230 0 7 chr1 127741083 127741219 -69454213 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 5 1559 850 265 28 63 chr1 127741470 127741788 -69453644 - Lx3C LINE L1 -3 6973 6667 5 1559 21 0 0 0 chr1 127741790 127741811 -69453621 + AT_rich Low_complexity Low_complexity 1 21 0 5 1559 642 288 11 0 chr1 127741824 127742001 -69453431 - B3A SINE B2 -16 182 4 5 1559 1255 283 30 11 chr1 127743390 127743761 -69451671 - MTEb LTR MaLR -1 378 1 5 1559 660 143 0 0 chr1 127743948 127744060 -69451372 + (TCCC)n Simple_repeat Simple_repeat 1 112 0 5 1559 827 280 78 64 chr1 127744985 127745267 -69450165 - B4 SINE B4 -4 288 3 5 1559 364 250 55 16 chr1 127745277 127745451 -69449981 - L1M5 LINE L1 -731 5431 5246 5 1559 683 259 18 23 chr1 127745582 127745794 -69449638 + MTEa LTR MaLR 147 376 -3 5 1559 262 308 33 0 chr1 127746028 127746119 -69449313 - MIR3 SINE MIR -51 157 64 5 1559 592 291 100 12 chr1 127746762 127747012 -69448420 + B4A SINE B4 3 274 -18 5 1559 510 244 15 52 chr1 127747153 127747287 -69448145 + ID_B1 SINE B4 90 218 -6 5 1559 239 315 55 9 chr1 127747308 127747322 -69448110 - ID_B1 SINE B4 -28 196 88 5 1559 298 228 51 4 chr1 127747322 127747412 -69448020 - PB1D10 SINE Alu -48 101 5 5 1559 517 289 93 51 chr1 127747743 127748037 -69447395 + B4 SINE B4 6 287 -5 5 1559 232 314 55 47 chr1 127748253 127748380 -69447052 - MIRb SINE MIR -58 210 83 5 1559 570 228 50 96 chr1 127748669 127748950 -69446482 - RLTR12B LTR ERVK -144 384 117 5 1559 555 16 0 0 chr1 127749160 127749224 -69446208 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1559 255 338 34 67 chr1 127749289 127749438 -69445994 - B4 SINE B4 -146 146 3 5 1559 444 123 0 0 chr1 127749789 127749862 -69445570 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1559 543 248 14 7 chr1 127749865 127750003 -69445429 - B3A SINE B2 -43 155 17 5 1559 1285 169 0 5 chr1 127750140 127750360 -69445072 + URR1B DNA MER1_type 7 225 0 5 1559 274 307 29 68 chr1 127751567 127751773 -69443659 + MIRb SINE MIR 3 200 -68 5 1559 335 317 228 35 chr1 127751778 127751859 -69443573 + B4 SINE B4 2 101 -191 5 1559 317 24 24 0 chr1 127751859 127751901 -69443531 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 5 1559 335 317 228 35 chr1 127751901 127752051 -69443381 + B4 SINE B4 102 277 -15 5 1559 199 271 0 0 chr1 127752343 127752391 -69443041 - MIR SINE MIR -166 96 49 5 1559 411 165 0 0 chr1 127752694 127752779 -69442653 + CT-rich Low_complexity Low_complexity 2 86 0 5 1559 411 21 0 0 chr1 127752782 127752830 -69442602 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1559 432 330 0 11 chr1 127753119 127753300 -69442132 + (TGG)n Simple_repeat Simple_repeat 2 180 0 5 1559 353 315 6 23 chr1 127753322 127753494 -69441938 + (TGG)n Simple_repeat Simple_repeat 1 169 0 5 1559 794 272 55 35 chr1 127754957 127755212 -69440220 + B4A SINE B4 15 274 -18 5 1559 511 289 133 95 chr1 127756969 127757121 -69438311 - B4 SINE B4 -14 278 99 5 1559 2247 110 0 9 chr1 127757121 127757450 -69437982 + ORR1A3 LTR MaLR 1 326 0 5 1559 3007 75 0 15 chr1 127757451 127757854 -69437578 + L1Md_F2 LINE L1 6174 6570 -12 5 1559 511 289 133 95 chr1 127757854 127757963 -69437469 - B4 SINE B4 -194 98 5 5 1559 432 0 0 0 chr1 127758465 127758513 -69436919 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1559 441 328 87 39 chr1 127758567 127758838 -69436594 - MTD LTR MaLR -102 317 22 5 1559 388 274 84 50 chr1 127759424 127759543 -69435889 - B4 SINE B4 -6 286 164 5 1559 264 301 45 6 chr1 127759625 127759782 -69435650 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 5 1559 1240 90 52 6 chr1 127759820 127760271 -69435161 + (TAGA)n Simple_repeat Simple_repeat 1 471 0 5 1559 787 197 0 21 chr1 127760271 127760416 -69435016 + B1_Mur4 SINE Alu 3 144 -6 5 1559 394 211 65 24 chr1 127760416 127760471 -69434961 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 5 1559 195 42 0 0 chr1 127761204 127761228 -69434204 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1559 26 0 0 0 chr1 127761842 127761868 -69433564 + AT_rich Low_complexity Low_complexity 1 26 0 5 1559 309 315 22 30 chr1 127761959 127762093 -69433339 + MER3 DNA MER1_type 1 133 -76 5 1559 431 248 0 38 chr1 127762088 127762193 -69433239 - ID_B1 SINE B4 -5 219 119 5 1559 840 214 58 0 chr1 127762264 127762437 -69432995 + MTC LTR MaLR 1 183 -238 5 1559 435 52 0 0 chr1 127762450 127762508 -69432924 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1559 1056 289 105 27 chr1 127762540 127762708 -69432724 + MTD LTR MaLR 18 182 -237 5 1559 2967 146 16 55 chr1 127762708 127763258 -69432174 + RLTR24 LTR ERV1 1 529 0 5 1559 1056 289 105 27 chr1 127763258 127763462 -69431970 + MTD LTR MaLR 183 419 0 5 1559 493 253 86 96 chr1 127763558 127763838 -69431594 - B4 SINE B4 -14 278 2 5 1559 391 324 72 38 chr1 127765294 127765557 -69429875 - B4A SINE B4 -18 274 3 5 1559 973 85 25 0 chr1 127765874 127766034 -69429398 - B2_Mm2 SINE B2 -43 173 1 5 1559 217 259 19 0 chr1 127766245 127766299 -69429133 + CT-rich Low_complexity Low_complexity 2 56 0 5 1559 441 129 0 0 chr1 127767477 127767547 -69427885 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1559 398 217 262 40 chr1 127767549 127767698 -69427734 - B3A SINE B2 -12 186 5 5 1559 414 0 0 0 chr1 127768213 127768259 -69427173 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1559 570 267 13 11 chr1 127770494 127770651 -69424781 - B3A SINE B2 -13 203 45 5 1559 421 235 0 48 chr1 127770671 127770774 -69424658 - B4 SINE B4 -191 101 4 5 1559 730 250 102 36 chr1 127771190 127771464 -69423968 + B4A SINE B4 1 292 0 5 1559 215 208 113 0 chr1 127771616 127771669 -69423763 + ID4_ SINE ID 19 77 -6 5 1559 658 221 76 29 chr1 127771628 127771800 -69423632 + ID_B1 SINE B4 36 215 -9 5 1559 474 18 0 0 chr1 127772047 127772102 -69423330 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1559 721 231 205 18 chr1 127772108 127772337 -69423095 - B4 SINE B4 -19 273 2 5 1559 839 244 154 4 chr1 127772589 127772836 -69422596 + ORR1E LTR MaLR 2 285 -74 5 1559 227 250 148 0 chr1 127772921 127773009 -69422423 + ORR1E LTR MaLR 279 379 0 5 1559 1899 248 36 20 chr1 127773725 127774025 -69421407 + Lx9 LINE L1 6327 6633 -1011 5 1559 1186 166 71 0 chr1 127774025 127774236 -69421196 - URR1A DNA MER1_type 0 226 1 5 1559 1899 260 114 37 chr1 127774236 127774904 -69420528 + Lx9 LINE L1 6634 7419 -225 5 1559 242 169 62 150 chr1 127774915 127775075 -69420357 + Lx9 LINE L1 7495 7640 -4 5 1559 25 0 0 0 chr1 127775112 127775137 -69420295 + AT_rich Low_complexity Low_complexity 1 25 0 5 1559 3770 199 112 7 chr1 127775137 127775898 -69419534 + Lx9 LINE L1 6646 7479 -165 5 1559 189 0 0 0 chr1 127775898 127775919 -69419513 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1559 3770 199 112 7 chr1 127775919 127776057 -69419375 + Lx9 LINE L1 7480 7640 -4 5 1559 21 36 0 0 chr1 127776057 127776085 -69419347 + AT_rich Low_complexity Low_complexity 1 28 0 5 1559 618 238 115 108 chr1 127776103 127776390 -69419042 + B4A SINE B4 2 290 -2 5 1559 477 90 0 0 chr1 127776438 127776505 -69418927 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1559 1877 234 19 7 chr1 127777199 127777613 -69417819 - MTD LTR MaLR 0 419 1 6 1559 483 273 128 28 chr1 127777615 127777826 -69417606 - MIR SINE MIR -29 233 2 6 1559 477 0 0 0 chr1 127778191 127778244 -69417188 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1559 662 228 83 6 chr1 127778480 127778648 -69416784 - B3A SINE B2 -16 182 2 6 1559 210 329 14 14 chr1 127778681 127778752 -69416680 - ID4_ SINE ID -5 78 8 6 1559 849 262 134 23 chr1 127779137 127779399 -69416033 - B4A SINE B4 0 292 2 6 1559 713 279 0 23 chr1 127779915 127780091 -69415341 + B4 SINE B4 9 180 -112 6 1559 444 67 0 0 chr1 127780111 127780171 -69415261 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1559 361 176 224 0 chr1 127780947 127781032 -69414400 + B3A SINE B2 12 115 -83 6 1559 617 271 194 67 chr1 127781050 127781235 -69414197 + B4 SINE B4 8 222 -70 6 1559 232 25 24 48 chr1 127781235 127781277 -69414155 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 6 1559 617 271 194 67 chr1 127781277 127781344 -69414088 + B4 SINE B4 223 291 -1 6 1559 329 131 0 16 chr1 127782282 127782344 -69413088 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 6 1559 219 129 40 54 chr1 127782360 127782434 -69412998 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 6 1559 301 190 0 100 chr1 127782443 127782513 -69412919 - RMER30 DNA MER1_type -120 82 20 6 1559 869 236 16 58 chr1 127783285 127783352 -69412080 + MTE2a LTR MaLR 125 190 -189 6 1559 195 129 0 0 chr1 127783352 127783383 -69412049 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 6 1559 869 236 16 58 chr1 127783383 127783572 -69411860 + MTE2a LTR MaLR 191 370 -9 6 1559 434 337 72 23 chr1 127783800 127784145 -69411287 - MLT1B LTR MaLR -1 389 1 6 1559 608 272 17 28 chr1 127784865 127785043 -69410389 - ID_B1 SINE B4 -8 216 41 6 1559 1395 223 42 24 chr1 127785382 127785717 -69409715 + MTE2b LTR MaLR 1 341 -38 6 1559 525 58 0 0 chr1 127785856 127785925 -69409507 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1559 378 311 110 44 chr1 127785929 127786201 -69409231 - B4A SINE B4 0 292 3 6 1559 623 225 106 53 chr1 127786654 127786842 -69408590 + B3A SINE B2 1 198 0 6 1559 699 329 26 26 chr1 127786844 127787234 -69408198 + L1MC4a LINE L1 7259 7648 -234 6 1559 1092 260 73 34 chr1 127787399 127787700 -69407732 - MTE2b LTR MaLR -7 372 60 6 1559 1362 151 18 0 chr1 127787700 127787919 -69407513 + URR1B DNA MER1_type 1 223 -2 6 1559 1092 260 73 34 chr1 127787919 127787971 -69407461 - MTE2b LTR MaLR -320 59 6 6 1559 212 185 0 18 chr1 127788175 127788230 -69407202 + GA-rich Low_complexity Low_complexity 1 54 0 6 1559 209 222 16 0 chr1 127788235 127788298 -69407134 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 6 1559 753 276 33 73 chr1 127789127 127789401 -69406031 + B4 SINE B4 2 264 -28 6 1559 186 43 0 0 chr1 127789401 127789424 -69406008 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1559 587 112 0 10 chr1 127790328 127790427 -69405005 + (TG)n Simple_repeat Simple_repeat 2 99 0 6 1559 634 294 117 4 chr1 127790452 127790701 -69404731 - B4 SINE B4 -14 278 2 6 1559 474 91 0 0 chr1 127791019 127791096 -69404336 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1559 547 316 37 54 chr1 127791134 127791375 -69404057 - B4A SINE B4 -55 237 1 6 1559 441 0 0 0 chr1 127791702 127791751 -69403681 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1559 413 377 43 50 chr1 127791773 127792055 -69403377 - B4A SINE B4 -4 288 9 6 1559 846 257 24 9 chr1 127792412 127792624 -69402808 + ID_B1 SINE B4 3 217 -7 6 1559 597 289 27 0 chr1 127792624 127792773 -69402659 + B3A SINE B2 3 155 -43 6 1559 378 0 0 0 chr1 127792791 127792833 -69402599 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6 1559 942 256 52 86 chr1 127793383 127793674 -69401758 + B4A SINE B4 1 281 -11 6 1559 252 0 0 0 chr1 127793680 127793708 -69401724 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1559 357 287 0 32 chr1 127794384 127794510 -69400922 + GA-rich Low_complexity Low_complexity 1 122 0 6 1559 184 100 0 48 chr1 127794522 127794564 -69400868 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1560 638 296 26 16 chr1 127795810 127795999 -69399433 - ID_B1 SINE B4 -1 223 33 6 1560 333 0 0 0 chr1 127796911 127796948 -69398484 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1560 494 277 12 0 chr1 127796956 127797183 -69398249 + L1MB7 LINE L1 5891 6177 -7 6 1560 658 301 35 5 chr1 127797338 127797535 -69397897 + B4A SINE B4 2 204 -88 6 1560 198 0 0 0 chr1 127797608 127797630 -69397802 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1560 279 0 0 0 chr1 127797644 127797675 -69397757 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 6 1560 965 261 28 5 chr1 127798000 127798216 -69397216 - ID_B1 SINE B4 0 224 4 6 1560 3303 137 26 2 chr1 127798412 127798916 -69396516 + Lx4A LINE L1 6542 7057 -1 6 1560 646 247 78 49 chr1 127799005 127799248 -69396184 + MTE2a LTR MaLR 130 379 0 6 1560 746 50 0 10 chr1 127799974 127800074 -69395358 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 1560 575 297 30 122 chr1 127800074 127800369 -69395063 - B4 SINE B4 -13 279 12 6 1560 479 220 83 0 chr1 127800459 127800568 -69394864 - RSINE1 SINE B4 -45 120 3 6 1560 408 299 25 25 chr1 127800700 127800858 -69394574 + RSINE1 SINE B4 2 159 -6 6 1560 261 0 0 0 chr1 127800883 127800912 -69394520 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1560 323 176 37 74 chr1 127803254 127803389 -69392043 + A-rich Low_complexity Low_complexity 2 131 0 6 1560 644 248 161 56 chr1 127803438 127803779 -69391653 + MTE2b LTR MaLR 1 377 -2 6 1560 252 0 0 0 chr1 127803825 127803853 -69391579 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1560 223 250 10 176 chr1 127803916 127804018 -69391414 + RSINE1 SINE B4 80 164 -1 6 1560 271 194 266 108 chr1 127804279 127804418 -69391014 + B4A SINE B4 27 187 -105 6 1560 270 204 17 100 chr1 127804506 127804626 -69390806 + L1MC4a LINE L1 6584 6693 -1189 6 1560 279 71 0 0 chr1 127804626 127804668 -69390764 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1560 583 276 86 45 chr1 127805411 127805680 -69389752 + B4A SINE B4 1 280 -12 6 1560 200 330 11 11 chr1 127805708 127805800 -69389632 + (CATA)n Simple_repeat Simple_repeat 1 92 0 6 1560 363 78 0 0 chr1 127806795 127806846 -69388586 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1560 973 229 22 128 chr1 127812719 127813040 -69382392 + B4 SINE B4 2 288 -4 6 1560 396 0 0 0 chr1 127814133 127814177 -69381255 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1560 322 309 49 115 chr1 127814198 127814381 -69381051 + MER5A DNA MER1_type 1 171 -18 6 1560 1893 198 110 5 chr1 127814399 127814780 -69380652 + MTC LTR MaLR 1 421 0 6 1560 867 137 4 12 chr1 127814817 127815076 -69380356 + (TATG)n Simple_repeat Simple_repeat 1 256 0 6 1560 262 0 30 0 chr1 127815076 127815109 -69380323 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 6 1560 840 227 32 13 chr1 127815748 127815976 -69379456 - L1_Mur1 LINE L1 -1888 4252 4023 6 1560 671 261 73 42 chr1 127816003 127816195 -69379237 - B3A SINE B2 0 198 1 6 1560 659 323 57 6 chr1 127816211 127816544 -69378888 - L1_Mur3 LINE L1 -3407 2473 2124 6 1560 332 327 158 85 chr1 127816960 127817668 -69377764 + RMER13A LTR ERVK 18 777 -83 6 1560 927 269 36 45 chr1 127818020 127818355 -69377077 + RMER15 LTR ERVL 238 569 -6 6 1560 456 19 0 0 chr1 127818783 127818836 -69376596 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1560 358 366 57 28 chr1 127818840 127819126 -69376306 - B4A SINE B4 -11 281 3 6 1560 611 248 0 0 chr1 127819135 127819260 -69376172 - B1F SINE Alu -11 138 14 6 1560 366 273 30 47 chr1 127819516 127819685 -69375747 + B3A SINE B2 18 198 0 6 1560 425 19 19 0 chr1 127820829 127820883 -69374549 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 6 1560 325 342 44 31 chr1 127821335 127821561 -69373871 - MIR SINE MIR -25 237 9 6 1560 938 282 8 23 chr1 127821901 127822166 -69373266 + B4A SINE B4 26 286 -6 6 1560 201 229 0 0 chr1 127822179 127822227 -69373205 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1560 466 257 106 0 chr1 127822523 127822636 -69372796 - B1F SINE Alu -24 125 1 6 1560 228 397 0 0 chr1 127822581 127822649 -69372783 - B4 SINE B4 -152 140 73 6 1560 438 262 70 47 chr1 127822851 127822878 -69372554 - ORR1E LTR MaLR 0 379 358 6 1560 351 0 0 0 chr1 127822878 127822917 -69372515 + (TTG)n Simple_repeat Simple_repeat 1 39 0 6 1560 1049 208 122 30 chr1 127822917 127823226 -69372206 - ORR1E LTR MaLR -22 357 3 6 1560 399 289 72 38 chr1 127823436 127823645 -69371787 + AmnSINE1 SINE SINE 195 410 -165 6 1560 216 0 0 0 chr1 127824022 127824046 -69371386 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1560 3474 30 2 0 chr1 127824110 127824505 -69370927 + MTA_Mm LTR MaLR 1 396 0 6 1560 1298 258 44 90 chr1 127824506 127824941 -69370491 - MTD LTR MaLR 0 419 5 6 1560 547 295 80 30 chr1 127825214 127825476 -69369956 + B4A SINE B4 1 275 -17 6 1560 216 0 0 0 chr1 127825881 127825905 -69369527 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1560 327 260 0 0 chr1 127825947 127826070 -69369362 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 1560 479 282 64 78 chr1 127826373 127826571 -69368861 - B4A SINE B4 -14 278 83 6 1560 1183 208 0 5 chr1 127826571 127826779 -69368653 - B3 SINE B2 -5 211 5 6 1560 479 282 64 78 chr1 127826779 127826861 -69368571 - B4A SINE B4 -210 82 2 6 1560 536 268 65 26 chr1 127826876 127826939 -69368493 + RMER30 DNA MER1_type 19 81 -121 6 1560 465 19 0 0 chr1 127826939 127826993 -69368439 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1560 536 268 65 26 chr1 127826993 127827082 -69368350 + RMER30 DNA MER1_type 82 177 -25 6 1560 664 321 97 47 chr1 127827861 127828435 -69366997 - MER44D DNA MER2_type -1 704 88 7 1560 1048 279 71 21 chr1 127828452 127828789 -69366643 - ORR1E LTR MaLR -5 354 1 7 1560 844 224 5 48 chr1 127829476 127829682 -69365750 - B3A SINE B2 0 198 2 7 1560 1163 276 65 11 chr1 127829796 127830148 -69365284 + MTE2a LTR MaLR 9 379 0 7 1560 989 226 94 40 chr1 127831866 127832142 -69363290 + B4 SINE B4 2 292 0 7 1560 1101 262 55 4 chr1 127832943 127833196 -69362236 + B4 SINE B4 1 266 -26 7 1560 558 285 112 32 chr1 127833621 127833871 -69361561 + B4 SINE B4 1 270 -22 7 1560 620 102 10 0 chr1 127833882 127833980 -69361452 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1560 227 365 121 5 chr1 127834308 127834498 -69360934 + B4 SINE B4 31 242 -50 7 1560 23 54 0 0 chr1 127834965 127835002 -69360430 + AT_rich Low_complexity Low_complexity 1 37 0 7 1560 24 32 0 0 chr1 127835066 127835097 -69360335 + AT_rich Low_complexity Low_complexity 1 31 0 7 1560 728 294 60 11 chr1 127835688 127835956 -69359476 + B4 SINE B4 12 292 0 7 1560 3437 183 16 8 chr1 127836062 127836691 -69358741 + Lx5 LINE L1 6415 7048 -2 7 1560 288 182 101 11 chr1 127836961 127837050 -69358382 - MER117 DNA MER1_type -98 99 3 7 1560 405 0 0 0 chr1 127837057 127837102 -69358330 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1560 244 340 76 51 chr1 127837183 127837341 -69358091 + LTR33A LTR ERVL 10 171 -349 7 1560 580 269 7 14 chr1 127837693 127837840 -69357592 + RSINE1 SINE B4 20 165 0 7 1560 364 264 16 126 chr1 127838390 127838572 -69356860 + RSINE1 SINE B4 3 164 -1 7 1560 273 356 87 5 chr1 127838720 127838926 -69356506 - MER2 DNA MER2_type -122 223 1 7 1560 812 293 108 25 chr1 127839358 127839683 -69355749 + MTE2a LTR MaLR 26 377 -2 7 1560 366 280 4 6 chr1 127840079 127840186 -69355246 + B4A SINE B4 8 114 -51 7 1560 878 304 48 3 chr1 127840397 127840687 -69354745 + Lx8 LINE L1 7168 7470 -3 7 1560 231 264 0 0 chr1 127840829 127840920 -69354512 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1560 268 315 30 95 chr1 127841048 127841248 -69354184 + MLT1B LTR MaLR 188 374 -16 7 1560 826 272 38 29 chr1 127842651 127842991 -69352441 - Lx5 LINE L1 -1165 5885 5498 7 1560 971 210 101 41 chr1 127843026 127843364 -69352068 - Lx9 LINE L1 0 7644 7287 7 1560 536 263 19 6 chr1 127843364 127843521 -69351911 - MLT1A0 LTR MaLR -206 159 1 7 1560 609 286 10 50 chr1 127844901 127845066 -69350366 + B3A SINE B2 3 167 -31 7 1560 324 111 0 0 chr1 127845066 127845120 -69350312 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1560 609 286 10 50 chr1 127845120 127845153 -69350279 + B3A SINE B2 168 193 -5 7 1560 311 211 91 13 chr1 127845217 127845294 -69350138 + B4 SINE B4 1 83 -209 7 1560 245 194 16 31 chr1 127845348 127845412 -69350020 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 7 1560 529 257 7 41 chr1 127846205 127846351 -69349081 - B1F1 SINE Alu 0 149 9 7 1560 21 0 0 0 chr1 127846358 127846379 -69349053 + AT_rich Low_complexity Low_complexity 1 21 0 7 1560 328 296 12 0 chr1 127846432 127846513 -69348919 - RSINE1 SINE B4 -22 143 62 7 1560 813 271 14 0 chr1 127846593 127846800 -69348632 + ID_B1 SINE B4 5 214 -10 7 1560 546 267 73 7 chr1 127847047 127847198 -69348234 - RSINE1 SINE B4 -3 162 2 7 1560 190 170 62 21 chr1 127847242 127847290 -69348142 - MIR3 SINE MIR -48 160 111 7 1560 860 250 82 47 chr1 127848246 127848502 -69346930 + B4 SINE B4 2 266 -26 7 1560 648 285 156 55 chr1 127848990 127849362 -69346070 - Lx8 LINE L1 -142 7331 6923 7 1560 288 0 0 0 chr1 127849386 127849418 -69346014 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1560 231 114 0 0 chr1 127849755 127849790 -69345642 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 7 1560 969 261 9 0 chr1 127850211 127850422 -69345010 - ID_B1 SINE B4 -10 214 2 7 1560 341 320 142 46 chr1 127850601 127851170 -69344262 + L2 LINE L2 1427 2050 -1369 7 1560 575 298 40 17 chr1 127851404 127851578 -69343854 + B3A SINE B2 1 178 -20 7 1560 348 24 0 0 chr1 127851580 127851621 -69343811 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1560 220 213 21 0 chr1 127851837 127851884 -69343548 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1560 633 257 141 11 chr1 127851956 127852141 -69343291 - B4A SINE B4 -2 290 82 7 1560 356 226 0 23 chr1 127852299 127852385 -69343047 + B4 SINE B4 2 85 -207 7 1560 996 142 0 66 chr1 127852385 127852566 -69342866 + L1_Mur2 LINE L1 4569 4737 -1140 7 1560 362 231 190 0 chr1 127852845 127852966 -69342466 + MTE2b LTR MaLR 1 144 -235 7 1560 810 153 0 14 chr1 127852967 127853113 -69342319 + RLTR18B LTR ERVK 1 144 -368 7 1560 1100 235 16 0 chr1 127853146 127853389 -69342043 + MTE2b LTR MaLR 133 379 0 7 1560 542 326 81 16 chr1 127853764 127854055 -69341377 + MLT2B3 LTR ERVL 391 696 -21 7 1560 249 177 0 37 chr1 127854067 127854149 -69341283 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 7 1560 241 155 103 0 chr1 127854462 127854520 -69340912 + (ATATG)n Simple_repeat Simple_repeat 3 66 0 7 1560 393 348 19 31 chr1 127854567 127854727 -69340705 + RSINE1 SINE B4 8 165 0 7 1560 285 51 0 0 chr1 127854734 127854773 -69340659 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1560 432 0 0 0 chr1 127854773 127854821 -69340611 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1560 648 319 23 49 chr1 127856037 127856519 -69338913 + L1MA4 LINE L1 5637 6092 -1604 7 1560 213 237 0 0 chr1 127857150 127857209 -69338223 + (CATA)n Simple_repeat Simple_repeat 4 62 0 7 1560 1274 251 39 8 chr1 127858206 127858508 -69336924 + MTEb LTR MaLR 1 311 -68 7 1560 261 0 0 0 chr1 127858508 127858537 -69336895 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 7 1560 1274 251 39 8 chr1 127858537 127858595 -69336837 + MTEb LTR MaLR 312 371 -8 7 1560 344 216 27 13 chr1 127859070 127859145 -69336287 + ID2 SINE ID 2 77 -6 7 1560 21 71 0 0 chr1 127859455 127859497 -69335935 + AT_rich Low_complexity Low_complexity 1 42 0 7 1560 281 250 50 0 chr1 127860081 127860161 -69335271 + ORR1E LTR MaLR 256 339 -20 7 1560 224 357 107 13 chr1 127860441 127860600 -69334832 - B4A SINE B4 -117 175 2 7 1560 1822 177 55 23 chr1 127860768 127860973 -69334459 - MTD LTR MaLR -8 411 191 7 1560 2437 95 88 21 chr1 127860973 127861348 -69334084 - MTB LTR MaLR 0 400 1 7 1560 1822 177 55 23 chr1 127861348 127861540 -69333892 - MTD LTR MaLR -229 190 1 7 1560 385 223 5 0 chr1 127862237 127862320 -69333112 - ID4_ SINE ID -61 91 7 7 1560 305 224 42 48 chr1 127862331 127862430 -69333002 - PB1D10 SINE Alu -1 126 15 7 1560 1231 266 79 11 chr1 127862956 127863310 -69332122 + MTEa LTR MaLR 1 378 -1 7 1560 433 341 29 17 chr1 127863858 127864031 -69331401 + B4A SINE B4 1 175 -117 7 1560 738 109 0 0 chr1 127864167 127864277 -69331155 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 1560 261 307 27 0 chr1 127865742 127865817 -69329615 + B4 SINE B4 2 78 -214 7 1560 219 36 0 0 chr1 127865832 127865860 -69329572 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1560 452 310 111 39 chr1 127865868 127866049 -69329383 + B3A SINE B2 4 197 -1 7 1560 246 200 45 30 chr1 127866066 127866133 -69329299 + B4A SINE B4 80 147 -145 7 1560 211 233 0 130 chr1 127866078 127866147 -69329285 + B1F2 SINE Alu 7 66 -83 7 1560 736 276 26 119 chr1 127866939 127867251 -69328181 - B4 SINE B4 -7 285 3 7 1560 198 0 0 0 chr1 127867283 127867305 -69328127 + (CAA)n Simple_repeat Simple_repeat 2 23 0 7 1560 291 28 0 0 chr1 127867306 127867342 -69328090 + (CAAAC)n Simple_repeat Simple_repeat 5 40 0 7 1560 25 51 0 0 chr1 127867446 127867485 -69327947 + AT_rich Low_complexity Low_complexity 1 39 0 7 1560 562 286 126 0 chr1 127867555 127867730 -69327702 + B3 SINE B2 1 197 -19 7 1560 712 225 154 39 chr1 127867748 127868007 -69327425 + Lx8 LINE L1 6993 7281 -192 7 1560 245 311 14 0 chr1 127868478 127868552 -69326880 + MIRb SINE MIR 126 200 -68 7 1560 638 292 142 20 chr1 127868913 127869259 -69326173 + L1MA4A LINE L1 5543 5930 -373 7 1560 280 246 0 0 chr1 127869452 127869521 -69325911 - L1MA10 LINE L1 -13 6321 6253 7 1560 365 0 22 0 chr1 127869930 127869975 -69325457 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 7 1560 288 275 108 18 chr1 127870383 127870494 -69324938 - PB1 SINE Alu -6 121 1 7 1560 378 0 0 0 chr1 127870652 127870694 -69324738 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1560 510 17 0 0 chr1 127870694 127870753 -69324679 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1560 622 300 31 27 chr1 127870939 127871162 -69324270 - Lx8 LINE L1 -178 7295 7072 7 1560 341 181 96 0 chr1 127871804 127871887 -69323545 - Lx9 LINE L1 -154 7490 7400 7 1560 575 177 26 74 chr1 127871859 127872048 -69323384 + Lx9 LINE L1 7458 7637 -7 7 1560 701 306 15 0 chr1 127872070 127872276 -69323156 + ID_B1 SINE B4 2 210 -14 7 1560 826 286 77 37 chr1 127872727 127873080 -69322352 + MTE2a LTR MaLR 1 375 -44 7 1560 380 297 55 55 chr1 127873111 127873393 -69322039 + MTEb LTR MaLR 80 379 0 7 1560 302 45 0 22 chr1 127873667 127873712 -69321720 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 1560 1278 220 30 72 chr1 127874031 127874404 -69321028 + ORR1E LTR MaLR 1 357 -2 7 1560 201 154 0 0 chr1 127874649 127874688 -69320744 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1560 1185 292 59 25 chr1 127874735 127875261 -69320171 - L1MA4 LINE L1 -385 5915 5372 7 1560 213 232 0 18 chr1 127875335 127875392 -69320040 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 8 1560 557 248 8 0 chr1 127877109 127877230 -69318202 - B3A SINE B2 -75 123 2 8 1560 446 283 188 24 chr1 127877500 127877750 -69317682 - B4 SINE B4 -1 291 1 8 1560 405 257 67 60 chr1 127878428 127878577 -69316855 + RSINE1 SINE B4 1 150 -15 8 1560 25 0 0 0 chr1 127878626 127878651 -69316781 + AT_rich Low_complexity Low_complexity 1 25 0 8 1560 228 170 0 0 chr1 127879175 127879228 -69316204 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1560 1237 246 18 90 chr1 127880008 127880397 -69315035 + ORR1D2 LTR MaLR 1 361 -9 8 1560 181 75 24 24 chr1 127881580 127881621 -69313811 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 1560 645 250 30 18 chr1 127882152 127882319 -69313113 + B4A SINE B4 124 292 0 8 1560 429 227 0 0 chr1 127882374 127882484 -69312948 + (CA)n Simple_repeat Simple_repeat 1 110 0 8 1560 387 0 0 0 chr1 127882636 127882679 -69312753 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1560 632 209 12 25 chr1 127882935 127883120 -69312312 - B3 SINE B2 -3 192 14 8 1560 180 0 0 0 chr1 127883600 127883620 -69311812 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1560 833 260 58 150 chr1 127883629 127883923 -69311509 - B4 SINE B4 -25 267 1 8 1560 566 231 125 52 chr1 127884186 127884378 -69311054 + B4 SINE B4 84 289 -3 8 1560 245 237 100 17 chr1 127885063 127885123 -69310309 + RSINE1 SINE B4 4 68 -97 8 1560 317 153 9 220 chr1 127885279 127885388 -69310044 + RSINE1 SINE B4 78 163 -2 8 1560 821 317 12 20 chr1 127885851 127886099 -69309333 - B4A SINE B4 -45 247 2 8 1560 585 278 75 53 chr1 127886568 127886834 -69308598 - B4 SINE B4 -16 276 5 8 1560 210 158 0 26 chr1 127887225 127887264 -69308168 + C-rich Low_complexity Low_complexity 4 41 0 8 1560 249 33 0 0 chr1 127887614 127887644 -69307788 + (TC)n Simple_repeat Simple_repeat 1 30 0 8 1560 419 196 28 34 chr1 127887675 127887854 -69307578 + (CATA)n Simple_repeat Simple_repeat 1 178 0 8 1560 285 29 0 0 chr1 127887859 127887893 -69307539 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1560 483 271 142 35 chr1 127888748 127889204 -69306228 + L1MEc LINE L1 1064 1568 -4832 8 1560 373 358 37 66 chr1 127889279 127889519 -69305913 + B4A SINE B4 28 269 -23 8 1560 474 18 0 0 chr1 127889519 127889574 -69305858 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1560 373 358 37 66 chr1 127889574 127889605 -69305827 + B4A SINE B4 270 291 -1 8 1560 448 208 21 26 chr1 127889611 127889708 -69305724 - B1_Mur3 SINE Alu -26 101 1 8 1560 231 309 0 58 chr1 127889771 127889857 -69305575 + ID_B1 SINE B4 137 217 -7 8 1560 287 187 38 62 chr1 127889780 127889860 -69305572 + B1_Mur2 SINE Alu 68 145 -4 8 1560 261 322 111 17 chr1 127889918 127890152 -69305280 + L1MEc LINE L1 2409 2664 -3655 8 1560 255 297 92 24 chr1 127890342 127890549 -69304883 + L1MEc LINE L1 2911 3131 -3188 8 1560 27 0 0 0 chr1 127890711 127890738 -69304694 + AT_rich Low_complexity Low_complexity 1 27 0 8 1560 616 251 67 45 chr1 127890738 127890917 -69304515 + B3A SINE B2 2 184 -14 8 1560 713 230 93 32 chr1 127891753 127892023 -69303409 + ORR1E LTR MaLR 2 281 -89 8 1560 1702 35 5 0 chr1 127892023 127892226 -69303206 - L1Md_F3 LINE L1 -489 6095 5892 8 1560 3967 39 12 4 chr1 127892226 127892713 -69302719 + L1Md_F3 LINE L1 6094 6584 0 8 1560 310 234 41 41 chr1 127892714 127892812 -69302620 + ORR1E LTR MaLR 260 357 -2 8 1560 272 188 0 15 chr1 127892836 127892901 -69302531 + GA-rich Low_complexity Low_complexity 1 64 0 8 1560 450 0 0 0 chr1 127893661 127893711 -69301721 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1560 851 268 20 41 chr1 127893825 127894117 -69301315 - B4 SINE B4 -6 286 1 8 1560 527 288 153 42 chr1 127894511 127894772 -69300660 + B4A SINE B4 2 291 -1 8 1560 351 44 0 0 chr1 127895154 127895199 -69300233 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1560 851 75 8 0 chr1 127895199 127895331 -69300101 + (GA)n Simple_repeat Simple_repeat 1 134 0 8 1560 610 297 89 41 chr1 127895354 127895670 -69299762 - MLT2B4 LTR ERVL -214 342 12 8 1560 378 0 0 0 chr1 127895830 127895872 -69299560 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1560 904 270 42 12 chr1 127895903 127896143 -69299289 - B4 SINE B4 -45 247 1 8 1560 1287 237 73 17 chr1 127896483 127896839 -69298593 - MTE2a LTR MaLR -3 376 1 8 1560 427 290 32 82 chr1 127897199 127897357 -69298075 - RSINE1 SINE B4 -13 152 3 8 1560 240 301 27 0 chr1 127897357 127897430 -69298002 + MER45A DNA Tip100 104 178 0 8 1560 341 302 122 0 chr1 127897432 127897571 -69297861 + LTR16C LTR ERVL 329 484 -5 8 1560 686 272 31 25 chr1 127897708 127897904 -69297528 + B3A SINE B2 2 198 0 8 1560 555 112 0 0 chr1 127898055 127898153 -69297279 + (TC)n Simple_repeat Simple_repeat 1 98 0 8 1560 616 278 175 16 chr1 127898173 127898425 -69297007 - B4 SINE B4 0 292 1 8 1560 296 291 80 50 chr1 127900142 127900190 -69295242 + L1MA5A LINE L1 5685 5732 -565 8 1560 1480 211 26 34 chr1 127900190 127900572 -69294860 + MTEb LTR MaLR 1 379 0 8 1560 296 291 80 50 chr1 127900572 127900722 -69294710 + L1MA5A LINE L1 5733 5888 -409 8 1560 563 294 74 30 chr1 127900895 127901234 -69294198 + ORR1E LTR MaLR 4 379 0 8 1560 841 304 31 42 chr1 127901363 127901651 -69293781 - B4A SINE B4 -6 286 2 8 1560 549 255 43 96 chr1 127901662 127901870 -69293562 - B3A SINE B2 0 198 2 8 1560 1090 102 0 7 chr1 127902915 127903063 -69292369 - B1_Mus1 SINE Alu 0 148 2 8 1560 540 304 4 65 chr1 127903230 127903459 -69291973 + ID_B1 SINE B4 4 218 -6 8 1560 813 342 62 14 chr1 127905109 127905527 -69289905 + Lx8 LINE L1 6963 7400 -73 8 1560 575 301 48 0 chr1 127906051 127906197 -69289235 - RSINE1 SINE B4 -4 161 9 8 1560 1012 295 18 18 chr1 127906304 127906584 -69288848 - B4 SINE B4 -7 285 6 8 1560 678 298 26 0 chr1 127906856 127907047 -69288385 - B3A SINE B2 -2 196 1 8 1560 208 241 0 17 chr1 127907837 127907896 -69287536 + (TTG)n Simple_repeat Simple_repeat 2 59 0 8 1560 319 295 304 13 chr1 127907914 127908072 -69287360 - ID_B1 SINE B4 -18 206 3 8 1560 266 318 0 0 chr1 127908090 127908156 -69287276 - ID4 SINE ID -3 80 15 8 1560 1436 226 21 46 chr1 127908661 127909050 -69286382 + MTE2b LTR MaLR 1 379 0 8 1560 21 36 0 0 chr1 127909453 127909481 -69285951 + AT_rich Low_complexity Low_complexity 1 28 0 8 1560 1029 255 90 60 chr1 127909609 127909976 -69285456 + MTE2b LTR MaLR 2 379 0 8 1560 1488 199 43 79 chr1 127910391 127910784 -69284648 + MTEa LTR MaLR 1 379 0 8 1560 1363 162 5 5 chr1 127910831 127911054 -69284378 - URR1B DNA MER1_type 0 225 3 8 1560 991 201 4 68 chr1 127911799 127912034 -69283398 + ID_B1 SINE B4 5 224 0 8 1560 543 280 113 52 chr1 127912298 127912528 -69282904 + B4A SINE B4 43 286 -6 8 1560 417 95 0 0 chr1 127913590 127913653 -69281779 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1560 859 233 123 42 chr1 127913696 127913956 -69281476 - B4 SINE B4 -11 281 1 8 1560 246 105 0 0 chr1 127914347 127914385 -69281047 + (GGGAGA)n Simple_repeat Simple_repeat 5 42 0 8 1560 4405 108 54 11 chr1 127915209 127915929 -69279503 + RMER17A LTR ERVK 1 751 0 8 1560 1072 252 21 69 chr1 127915980 127916366 -69279066 + MTE2a LTR MaLR 3 362 -8 8 1560 459 0 0 0 chr1 127916517 127916568 -69278864 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1560 486 291 76 63 chr1 127917037 127917275 -69278157 + B4 SINE B4 1 241 -51 8 1560 212 29 0 79 chr1 127917621 127917659 -69277773 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1560 785 284 18 65 chr1 127918436 127918715 -69276717 - B4A SINE B4 0 292 27 8 1560 561 292 80 34 chr1 127919149 127919411 -69276021 + B4 SINE B4 3 276 -16 8 1560 342 0 0 0 chr1 127920052 127920090 -69275342 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1560 971 254 57 16 chr1 127920107 127920351 -69275081 - B4 SINE B4 -38 254 1 8 1560 201 276 34 17 chr1 127925727 127925786 -69269646 - MIR SINE MIR -187 75 16 8 1560 368 71 18 0 chr1 127925976 127926032 -69269400 + (TATG)n Simple_repeat Simple_repeat 1 57 0 8 1560 604 307 37 0 chr1 127926034 127926197 -69269235 - B3A SINE B2 -28 170 2 8 1561 195 313 48 12 chr1 127927282 127927366 -69268066 + MIRc SINE MIR 64 150 -118 8 1561 1021 254 19 19 chr1 127927371 127927640 -69267792 + B4 SINE B4 1 269 -23 8 1561 510 17 0 0 chr1 127927641 127927700 -69267732 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1561 21 0 0 0 chr1 127927964 127927985 -69267447 + AT_rich Low_complexity Low_complexity 1 21 0 8 1561 724 325 0 0 chr1 127928338 127928538 -69266894 + B4 SINE B4 19 218 -74 8 1561 1057 116 0 11 chr1 127928544 127928719 -69266713 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 8 1561 405 0 0 0 chr1 127928796 127928841 -69266591 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1561 458 262 125 27 chr1 127928918 127929102 -69266330 + B3 SINE B2 15 216 0 8 1561 571 254 133 52 chr1 127929672 127929942 -69265490 + B4 SINE B4 1 292 0 8 1561 260 282 0 0 chr1 127929950 127930028 -69265404 + (TA)n Simple_repeat Simple_repeat 1 78 0 8 1561 387 0 0 0 chr1 127930655 127930698 -69264734 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1561 747 256 88 106 chr1 127930725 127931009 -69264423 - B4 SINE B4 0 292 14 8 1561 245 317 12 0 chr1 127931311 127931393 -69264039 + ID4_ SINE ID 1 83 0 8 1561 751 240 71 52 chr1 127932556 127932627 -69262805 - ID_B1 SINE B4 -1 223 160 8 1561 780 256 115 92 chr1 127932627 127932976 -69262456 - ORR1E LTR MaLR -2 357 1 8 1561 751 240 71 52 chr1 127932976 127933115 -69262317 - ID_B1 SINE B4 -65 159 9 8 1561 239 307 0 41 chr1 127934381 127934491 -69260941 + MIR SINE MIR 36 136 -132 8 1561 183 184 0 0 chr1 127934589 127934627 -69260805 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1561 2191 92 53 20 chr1 127934683 127935039 -69260393 + RLTR9A LTR ERVK 1 368 0 9 1561 417 228 151 58 chr1 127935254 127935426 -69260006 + MTEa LTR MaLR 188 375 -4 9 1561 326 282 35 0 chr1 127936910 127936995 -69258437 + B4 SINE B4 2 89 -203 9 1561 1061 142 157 8 chr1 127936999 127937241 -69258191 + Lx9 LINE L1 7366 7643 -1 9 1561 406 330 54 30 chr1 127937253 127937456 -69257976 + B4 SINE B4 84 291 -1 9 1561 440 239 111 103 chr1 127938135 127938406 -69257026 + B4 SINE B4 2 274 -18 9 1561 561 99 0 0 chr1 127938482 127938563 -69256869 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1561 1625 46 0 0 chr1 127938579 127938775 -69256657 + L1Md_T LINE L1 6387 6582 0 9 1561 286 263 0 38 chr1 127939769 127939848 -69255584 - MTD LTR MaLR -45 334 259 9 1561 243 0 0 0 chr1 127939849 127939876 -69255556 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1561 450 252 82 82 chr1 127940055 127940202 -69255230 - B4A SINE B4 -142 150 4 9 1561 443 315 49 7 chr1 127940565 127940709 -69254723 - MTD LTR MaLR -206 213 64 9 1561 492 117 0 0 chr1 127940773 127940850 -69254582 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1561 387 0 0 0 chr1 127941116 127941159 -69254273 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1561 542 256 180 39 chr1 127941888 127942144 -69253288 + B4A SINE B4 1 292 0 9 1561 302 123 18 0 chr1 127942146 127942203 -69253229 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1561 571 246 122 33 chr1 127942441 127942622 -69252810 - B3A SINE B2 0 198 2 9 1561 1271 262 25 88 chr1 127942907 127943107 -69252325 + MTEb LTR MaLR 5 182 -197 9 1561 1103 57 14 7 chr1 127943107 127943248 -69252184 + B1_Mus2 SINE Alu 1 142 -5 9 1561 585 0 0 0 chr1 127943248 127943313 -69252119 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1561 1271 262 25 88 chr1 127943313 127943509 -69251923 + MTEb LTR MaLR 183 376 -3 9 1561 210 91 0 0 chr1 127943880 127943913 -69251519 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1561 231 393 19 9 chr1 127943917 127944025 -69251407 - RSINE1 SINE B4 -6 159 51 9 1561 486 0 0 0 chr1 127944555 127944609 -69250823 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1561 622 277 123 0 chr1 127945619 127945814 -69249618 + ID_B1 SINE B4 3 221 -3 9 1561 233 314 154 41 chr1 127946979 127947102 -69248330 - MIR SINE MIR -108 154 18 9 1561 349 344 0 47 chr1 127947475 127947603 -69247829 - RMER15 LTR ERVL -98 477 356 9 1561 233 316 55 42 chr1 127947750 127947900 -69247532 - MIR SINE MIR -22 246 86 9 1561 577 296 39 35 chr1 127948156 127948359 -69247073 + Lx8 LINE L1 7108 7311 -162 9 1561 282 189 28 42 chr1 127948381 127948453 -69246979 + Lx8 LINE L1 7403 7473 0 9 1561 361 300 175 22 chr1 127948503 127948772 -69246660 - MLT1A0 LTR MaLR -9 356 47 9 1561 798 288 9 45 chr1 127948782 127949004 -69246428 - ID_B1 SINE B4 -10 214 1 9 1561 196 340 94 57 chr1 127949196 127949302 -69246130 - MIRm SINE MIR -152 124 15 9 1561 1013 155 207 5 chr1 127949388 127949576 -69245856 - URR1A DNA MER1_type 0 226 1 9 1561 482 320 34 21 chr1 127949835 127950068 -69245364 + L1MA6 LINE L1 6016 6251 -49 9 1561 383 290 34 7 chr1 127950127 127950273 -69245159 + GA-rich Low_complexity Low_complexity 3 152 0 9 1561 930 224 32 157 chr1 127951074 127951386 -69244046 + B4A SINE B4 2 274 -18 9 1561 612 294 43 24 chr1 127952239 127952448 -69242984 - ID_B1 SINE B4 -3 221 9 9 1561 228 374 60 10 chr1 127953028 127953128 -69242304 - MER45R DNA Tip100 -1475 106 2 9 1561 985 304 49 4 chr1 127953236 127953503 -69241929 - B4A SINE B4 -2 290 12 9 1561 424 262 202 48 chr1 127953843 127954095 -69241337 - B4 SINE B4 -1 291 1 9 1561 1061 276 35 18 chr1 127954422 127954706 -69240726 - B4 SINE B4 0 292 4 9 1561 647 335 46 17 chr1 127954851 127955088 -69240344 + B4A SINE B4 1 244 -48 9 1561 458 288 56 0 chr1 127956136 127956296 -69239136 + L1M2 LINE L1 5606 5774 -526 9 1561 255 79 0 0 chr1 127956296 127956334 -69239098 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1561 1272 225 141 6 chr1 127956498 127956824 -69238608 - ORR1D2 LTR MaLR 0 370 1 9 1561 366 122 74 7 chr1 127957149 127957298 -69238134 + (TA)n Simple_repeat Simple_repeat 1 159 0 9 1561 21 0 0 0 chr1 127957333 127957354 -69238078 + AT_rich Low_complexity Low_complexity 1 21 0 9 1561 351 261 34 11 chr1 127957369 127957458 -69237974 - B4A SINE B4 -12 280 190 9 1561 309 283 53 63 chr1 127957762 127957876 -69237556 + B1F SINE Alu 13 116 -1 9 1561 395 342 26 0 chr1 127957911 127958066 -69237366 + RSINE1 SINE B4 5 163 -2 9 1561 201 171 0 0 chr1 127958073 127958108 -69237324 + (CATA)n Simple_repeat Simple_repeat 2 36 0 9 1561 232 271 90 30 chr1 127958128 127958261 -69237171 + Charlie4a DNA MER1_type 310 450 -58 9 1561 833 322 55 16 chr1 127958205 127958514 -69236918 + MER2 DNA MER2_type 25 345 0 9 1561 653 192 18 2 chr1 127958569 127958703 -69236729 + B3A SINE B2 1 147 -69 9 1561 285 29 0 0 chr1 127958764 127958798 -69236634 + (TGG)n Simple_repeat Simple_repeat 1 34 0 9 1561 459 0 0 0 chr1 127959619 127959670 -69235762 + (TTA)n Simple_repeat Simple_repeat 3 53 0 9 1561 2409 64 24 71 chr1 127959746 127960084 -69235348 - L1Md_F2 LINE L1 -12 6570 6249 9 1561 652 280 0 13 chr1 127960125 127960277 -69235155 - B4 SINE B4 -69 223 74 9 1561 285 145 60 0 chr1 127960707 127960790 -69234642 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 9 1561 725 241 148 20 chr1 127961916 127962166 -69233266 + B4A SINE B4 5 286 -6 9 1561 509 223 3 7 chr1 127962550 127962655 -69232777 + B3 SINE B2 2 103 -95 9 1561 696 275 52 17 chr1 127962648 127962824 -69232608 + ID_B1 SINE B4 41 222 -2 9 1561 564 111 0 0 chr1 127962982 127963072 -69232360 + (TG)n Simple_repeat Simple_repeat 2 91 0 9 1561 308 270 139 10 chr1 127963072 127963173 -69232259 - B1F1 SINE Alu -9 140 27 9 1561 245 390 95 36 chr1 127963727 127963948 -69231484 + MER68 LTR ERVL 131 364 -199 9 1561 336 24 0 0 chr1 127964116 127964157 -69231275 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1561 739 233 138 15 chr1 127964202 127964398 -69231034 - B4 SINE B4 -70 222 3 9 1561 213 103 14 68 chr1 127964595 127964668 -69230764 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1561 259 206 45 27 chr1 127964712 127964822 -69230610 + (TA)n Simple_repeat Simple_repeat 1 112 0 9 1561 266 391 31 6 chr1 127964885 127965047 -69230385 - MER20B DNA MER1_type -272 511 346 9 1561 235 250 12 24 chr1 127965622 127965704 -69229728 + GA-rich Low_complexity Low_complexity 1 81 0 9 1561 2331 95 38 9 chr1 127966045 127966365 -69229067 + ORR1A4 LTR MaLR 1 329 0 9 1561 185 283 0 19 chr1 127966556 127966610 -69228822 - MIR SINE MIR -204 58 6 9 1561 192 322 124 22 chr1 127966861 127966950 -69228482 + MIRb SINE MIR 2 99 -169 9 1561 872 264 23 5 chr1 127967129 127967346 -69228086 - MTEb LTR MaLR -8 371 151 9 1561 1242 230 117 10 chr1 127967350 127967657 -69227775 + ORR1D1 LTR MaLR 1 340 -34 9 1561 742 262 79 55 chr1 127967658 127967912 -69227520 - MTE2b LTR MaLR -119 260 1 9 1561 394 311 41 20 chr1 127968476 127968727 -69226705 + L1M5 LINE L1 4256 4515 -1631 9 1561 420 55 0 0 chr1 127969200 127969255 -69226177 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1561 520 319 21 14 chr1 127969278 127969421 -69226011 - RSINE1 SINE B4 -13 152 9 9 1561 419 299 93 9 chr1 127970062 127970170 -69225262 + B3A SINE B2 40 156 -42 9 1561 510 61 0 0 chr1 127970172 127970238 -69225194 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1561 207 69 0 0 chr1 127970238 127970267 -69225165 + (TA)n Simple_repeat Simple_repeat 2 30 0 9 1561 471 101 0 0 chr1 127970307 127970386 -69225046 + (TC)n Simple_repeat Simple_repeat 1 79 0 9 1561 25 75 0 0 chr1 127970804 127970857 -69224575 + AT_rich Low_complexity Low_complexity 1 53 0 9 1561 636 286 8 25 chr1 127971008 127971207 -69224225 + B3A SINE B2 9 203 -13 9 1561 914 251 35 23 chr1 127971231 127971525 -69223907 - Lx7 LINE L1 -1837 5859 5593 9 1561 771 203 83 30 chr1 127971648 127971864 -69223568 + MTD LTR MaLR 184 405 -14 9 1561 280 316 50 43 chr1 127972111 127972288 -69223144 + B3A SINE B2 2 187 -29 9 1561 233 266 16 0 chr1 127972335 127972399 -69223033 + Lx8 LINE L1 5830 5894 -1579 9 1561 22 0 0 0 chr1 127972673 127972695 -69222737 + AT_rich Low_complexity Low_complexity 1 22 0 9 1561 745 250 43 11 chr1 127973075 127973261 -69222171 + B4 SINE B4 9 200 -92 9 1561 378 0 0 0 chr1 127973283 127973325 -69222107 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1561 23 0 0 0 chr1 127973437 127973460 -69221972 + AT_rich Low_complexity Low_complexity 1 23 0 9 1561 180 0 0 0 chr1 127974618 127974638 -69220794 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1561 738 116 0 0 chr1 127975258 127975396 -69220036 + (GA)n Simple_repeat Simple_repeat 1 138 0 9 1561 285 29 0 0 chr1 127975584 127975618 -69219814 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1561 417 268 77 75 chr1 127976280 127976570 -69218862 - RSINE1 SINE B4 0 292 1 9 1561 564 260 16 0 chr1 127976570 127976693 -69218739 - B1F2 SINE Alu -8 141 17 9 1561 788 267 5 64 chr1 127977161 127977365 -69218067 + B4A SINE B4 83 274 -18 9 1561 468 0 0 0 chr1 127977374 127977426 -69218006 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1561 23 0 0 0 chr1 127977875 127977898 -69217534 + AT_rich Low_complexity Low_complexity 1 23 0 9 1561 1053 297 108 0 chr1 127978010 127978370 -69217062 - Lx8 LINE L1 -294 7179 6781 9 1561 369 109 0 0 chr1 127978538 127978593 -69216839 + (GGGAA)n Simple_repeat Simple_repeat 5 59 0 1 1561 623 265 18 47 chr1 127978604 127978774 -69216658 + B4 SINE B4 126 290 -2 1 1561 630 95 0 0 chr1 127978862 127978957 -69216475 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1561 257 277 11 57 chr1 127978957 127979045 -69216387 + L1ME1 LINE L1 5906 5989 -190 1 1561 198 0 0 0 chr1 127979202 127979224 -69216208 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 1561 228 67 0 0 chr1 127979224 127979253 -69216179 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 1561 496 272 14 14 chr1 127981482 127981620 -69213812 - MTD LTR MaLR -14 405 268 1 1561 301 152 0 0 chr1 127981626 127981672 -69213760 + ERVL-B4-int LTR ERVL 4451 4496 -1218 1 1561 712 261 76 60 chr1 127981684 127981972 -69213460 - MTD LTR MaLR -122 257 1 1 1561 348 299 28 9 chr1 127982805 127982926 -69212506 - MTC LTR MaLR -43 378 267 1 1561 850 259 57 161 chr1 127982967 127983284 -69212148 - B4 SINE B4 -7 285 2 1 1561 399 41 0 0 chr1 127983723 127983772 -69211660 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1561 994 224 65 30 chr1 127983783 127984046 -69211386 - B4 SINE B4 -15 277 6 1 1561 21 0 0 0 chr1 127984735 127984756 -69210676 + AT_rich Low_complexity Low_complexity 1 21 0 1 1561 828 268 77 26 chr1 127985141 127985413 -69210019 + B4A SINE B4 3 288 -4 1 1561 278 340 104 0 chr1 127985549 127985655 -69209777 - B3A SINE B2 -25 173 57 1 1561 1866 169 60 22 chr1 127985711 127986075 -69209357 + ORR1C1 LTR MaLR 1 378 0 1 1561 904 285 41 73 chr1 127986152 127986493 -69208939 + MTE2a LTR MaLR 11 340 -39 1 1561 1368 243 14 20 chr1 127986655 127986949 -69208483 - B4 SINE B4 0 292 1 1 1561 271 361 0 8 chr1 127988025 127988148 -69207284 + (TATG)n Simple_repeat Simple_repeat 3 124 0 1 1561 836 253 53 141 chr1 127988150 127988454 -69206978 - B4 SINE B4 -12 280 4 1 1561 225 0 0 0 chr1 127989093 127989118 -69206314 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1561 550 319 62 51 chr1 127989154 127989428 -69206004 + B4A SINE B4 16 292 0 1 1561 1062 144 0 0 chr1 127989586 127989766 -69205666 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1561 564 252 86 25 chr1 127990074 127990237 -69205195 - B3A SINE B2 -19 176 4 1 1561 21 57 0 0 chr1 127990470 127990505 -69204927 + AT_rich Low_complexity Low_complexity 1 35 0 1 1561 656 224 115 22 chr1 127991770 127991953 -69203479 - ORR1D2 LTR MaLR -58 312 113 1 1561 217 172 31 0 chr1 127992086 127992150 -69203282 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 1561 753 282 82 107 chr1 127992596 127993009 -69202423 - MTD LTR MaLR -14 405 3 1 1561 439 258 259 42 chr1 127993478 127993717 -69201715 + B4 SINE B4 2 292 0 1 1561 402 121 0 0 chr1 127993718 127993784 -69201648 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1561 233 235 58 41 chr1 127994127 127994239 -69201193 + ID4_ SINE ID 2 113 -39 1 1561 27 0 0 0 chr1 127994442 127994469 -69200963 + AT_rich Low_complexity Low_complexity 1 27 0 1 1561 443 270 80 0 chr1 127994505 127994605 -69200827 - RSINE1 SINE B4 -36 129 22 1 1561 378 289 19 0 chr1 127995129 127995233 -69200199 - PB1 SINE Alu -18 109 4 1 1561 1137 238 55 105 chr1 127995941 127996340 -69199092 - MTE2a LTR MaLR 0 379 1 1 1561 1470 216 128 11 chr1 127996396 127996756 -69198676 + MTD LTR MaLR 18 419 0 1 1561 543 252 200 45 chr1 127997638 127997883 -69197549 - B4 SINE B4 -5 287 5 1 1561 998 232 92 16 chr1 127998620 127998870 -69196562 - B4 SINE B4 -22 270 2 1 1561 306 50 0 0 chr1 127999778 127999818 -69195614 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1561 517 318 98 29 chr1 128000003 128000207 -69195225 - B4 SINE B4 -72 220 3 1 1561 5039 36 0 0 chr1 128000225 128000811 -69194621 + L1Md_T LINE L1 5997 6582 0 2 1561 494 270 107 57 chr1 128001751 128002014 -69193418 - B4 SINE B4 -14 278 3 3 1561 376 268 165 0 chr1 128002802 128002929 -69192503 - RSINE1 SINE B4 -10 155 8 4 1561 618 253 39 44 chr1 128003253 128003435 -69191997 + B3A SINE B2 2 182 -16 5 1561 537 265 126 15 chr1 128003668 128003867 -69191565 - ID_B1 SINE B4 -2 222 2 6 1561 247 303 102 32 chr1 128004309 128004466 -69190966 + MLT1J LTR MaLR 1 168 -344 7 1561 527 345 45 31 chr1 128004700 128004987 -69190445 + MLT1J LTR MaLR 222 512 0 7 1561 22 0 0 0 chr1 128005101 128005123 -69190309 + AT_rich Low_complexity Low_complexity 1 22 0 8 1561 1052 285 12 97 chr1 128005410 128005811 -69189621 + MTE2b LTR MaLR 5 371 -8 9 1561 442 301 152 35 chr1 128006196 128006571 -69188861 + MTD LTR MaLR 1 419 0 1 1561 1156 56 0 27 chr1 128007519 128007667 -69187765 + B1_Mus1 SINE Alu 5 148 0 1 1561 5071 71 1 0 chr1 128007667 128008483 -69186949 + L1_Mus1 LINE L1 5403 6219 -348 1 1561 1032 75 0 0 chr1 128008483 128008630 -69186802 + (GGA)n Simple_repeat Simple_repeat 1 147 0 1 1561 1431 50 0 0 chr1 128008630 128008810 -69186622 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1561 374 240 169 14 chr1 128008949 128009190 -69186242 + L1MA5 LINE L1 5725 6002 -289 1 1561 319 290 211 11 chr1 128009530 128009706 -69185726 - ID_B1 SINE B4 -11 213 3 1 1561 333 360 68 0 chr1 128009719 128009880 -69185552 + MLT1L LTR MaLR 56 227 -383 1 1561 21 36 0 0 chr1 128010070 128010098 -69185334 + AT_rich Low_complexity Low_complexity 1 28 0 1 1561 294 349 28 0 chr1 128010103 128010209 -69185223 + PB1D10 SINE Alu 2 110 -7 1 1561 204 40 0 0 chr1 128010275 128010300 -69185132 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1561 1345 158 18 0 chr1 128010374 128010595 -69184837 + URR1B DNA MER1_type 1 225 0 2 1561 494 341 4 55 chr1 128010610 128010846 -69184586 + B4A SINE B4 18 241 -51 2 1561 378 0 0 0 chr1 128010908 128010950 -69184482 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1561 505 301 79 36 chr1 128011670 128011949 -69183483 - B4A SINE B4 -1 291 1 2 1561 298 330 102 24 chr1 128013714 128013919 -69181513 + B4A SINE B4 41 261 -31 2 1561 474 65 0 0 chr1 128013977 128014039 -69181393 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1561 706 260 51 65 chr1 128014069 128014283 -69181149 + B4 SINE B4 82 292 0 2 1561 495 194 251 6 chr1 128014663 128014834 -69180598 - ID_B1 SINE B4 -8 216 4 2 1561 243 382 0 0 chr1 128015170 128015259 -69180173 - L2b LINE L2 0 3375 3287 2 1561 633 252 8 0 chr1 128015456 128015587 -69179845 - ID_B1 SINE B4 0 224 93 3 1561 209 279 50 12 chr1 128015744 128015824 -69179608 - MER5A DNA MER1_type 0 189 107 3 1561 721 292 111 4 chr1 128015890 128016134 -69179298 + B4A SINE B4 1 270 -22 3 1561 311 0 26 0 chr1 128016145 128016184 -69179248 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1561 371 119 15 0 chr1 128016686 128016753 -69178679 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 3 1561 811 262 80 29 chr1 128017496 128017771 -69177661 - B4A SINE B4 -2 290 2 3 1561 441 54 0 0 chr1 128018131 128018187 -69177245 + (TCCC)n Simple_repeat Simple_repeat 1 56 0 3 1561 301 192 13 27 chr1 128018187 128018262 -69177170 - HAL1-3A_ME LINE L1 -809 2049 1976 3 1561 246 377 7 20 chr1 128018684 128018833 -69176599 - MER5A DNA MER1_type -40 149 3 3 1561 491 231 29 40 chr1 128020054 128020414 -69175018 + GA-rich Low_complexity Low_complexity 1 356 0 3 1561 234 0 0 0 chr1 128021306 128021332 -69174100 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1561 397 191 30 69 chr1 128021391 128021492 -69173940 - B4 SINE B4 -193 99 3 4 1561 414 0 0 0 chr1 128021609 128021655 -69173777 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1561 342 0 0 0 chr1 128021655 128021692 -69173740 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1561 255 298 16 40 chr1 128022049 128022175 -69173257 + CT-rich Low_complexity Low_complexity 1 123 0 4 1561 269 280 108 34 chr1 128022393 128022541 -69172891 - L1MC4a LINE L1 -1642 6240 6082 4 1561 846 267 28 32 chr1 128022854 128023136 -69172296 - B4A SINE B4 -1 291 11 4 1561 22 35 0 0 chr1 128023607 128023636 -69171796 + AT_rich Low_complexity Low_complexity 1 29 0 4 1561 497 285 100 35 chr1 128023788 128024017 -69171415 - Lx8 LINE L1 -37 7436 7193 4 1561 710 311 11 0 chr1 128024245 128024435 -69170997 + B4 SINE B4 8 199 -93 4 1561 384 22 0 0 chr1 128024504 128024549 -69170883 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1561 710 230 9 105 chr1 128025531 128025750 -69169682 - B3A SINE B2 0 198 1 5 1561 201 74 0 0 chr1 128025763 128025790 -69169642 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1561 724 293 91 43 chr1 128026556 128026952 -69168480 + MTD LTR MaLR 1 415 -4 5 1561 366 270 0 0 chr1 128026945 128027019 -69168413 + RSINE1 SINE B4 23 96 -69 5 1561 627 118 0 40 chr1 128027113 128027237 -69168195 + GA-rich Low_complexity Low_complexity 2 120 0 5 1561 516 56 0 0 chr1 128027465 128027537 -69167895 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1561 247 71 0 91 chr1 128028415 128028492 -69166940 + A-rich Low_complexity Low_complexity 3 72 0 5 1561 272 313 44 33 chr1 128028747 128028940 -69166492 - MIRc SINE MIR -29 239 44 5 1561 211 254 0 31 chr1 128029695 128029760 -69165672 + T-rich Low_complexity Low_complexity 2 64 0 5 1561 286 317 10 19 chr1 128030685 128030788 -69164644 + B4A SINE B4 130 231 -61 5 1561 3706 301 53 16 chr1 128030805 128032130 -69163302 + Lx8 LINE L1 6100 7473 0 6 1561 244 259 0 33 chr1 128032134 128032194 -69163238 + B4 SINE B4 216 273 -19 5 1561 249 283 64 36 chr1 128032642 128032752 -69162680 - MER20 DNA MER1_type 0 219 107 6 1561 485 290 59 27 chr1 128033019 128033239 -69162193 + RMER15 LTR ERVL 336 562 -13 6 1561 498 17 0 0 chr1 128033519 128033578 -69161854 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1561 587 265 132 0 chr1 128033578 128033744 -69161688 - B4A SINE B4 -23 269 82 6 1561 330 248 92 78 chr1 128033908 128034061 -69161371 - RMER30 DNA MER1_type -29 173 19 6 1561 738 297 24 32 chr1 128034065 128034312 -69161120 + B4 SINE B4 44 288 -4 6 1561 201 317 0 0 chr1 128034326 128034386 -69161046 + (CATA)n Simple_repeat Simple_repeat 1 60 0 6 1561 635 255 65 0 chr1 128034501 128034687 -69160745 - B3A SINE B2 -15 201 3 6 1561 807 289 27 12 chr1 128035253 128035512 -69159920 + B4A SINE B4 8 270 -22 6 1561 691 296 117 16 chr1 128035613 128035870 -69159562 + B4 SINE B4 2 284 -8 7 1561 270 0 0 0 chr1 128035875 128035905 -69159527 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1561 459 0 0 0 chr1 128036188 128036239 -69159193 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 7 1561 513 84 0 0 chr1 128036854 128036925 -69158507 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1561 541 318 41 26 chr1 128036942 128037213 -69158219 - B4A SINE B4 -16 276 2 7 1561 297 232 91 0 chr1 128037628 128037727 -69157705 - MER3 DNA MER1_type -19 190 83 7 1561 450 0 0 0 chr1 128037750 128037800 -69157632 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1561 606 201 124 60 chr1 128038457 128038642 -69156790 + B3A SINE B2 1 197 -1 7 1561 575 307 11 22 chr1 128038737 128038920 -69156512 - B4A SINE B4 -28 264 84 7 1561 1541 178 83 24 chr1 128039022 128039361 -69156071 + MTC LTR MaLR 15 373 -48 7 1561 186 71 0 0 chr1 128040052 128040080 -69155352 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 8 1561 228 282 0 0 chr1 128040099 128040170 -69155262 + CT-rich Low_complexity Low_complexity 1 71 0 8 1561 599 270 75 129 chr1 128040171 128040465 -69154967 - B4 SINE B4 -6 286 9 8 1561 226 159 0 22 chr1 128040651 128040696 -69154736 + T-rich Low_complexity Low_complexity 4 47 0 8 1561 1023 233 71 8 chr1 128040836 128041091 -69154341 - Lx8 LINE L1 -2 7471 7201 8 1561 237 211 23 200 chr1 128041825 128041955 -69153477 + B1F SINE Alu 39 145 -4 8 1561 467 228 0 42 chr1 128041856 128041975 -69153457 + B4 SINE B4 127 240 -52 8 1561 326 159 0 14 chr1 128041975 128042045 -69153387 + GA-rich Low_complexity Low_complexity 2 70 0 8 1561 529 301 32 21 chr1 128043125 128043430 -69152002 + L1MA4 LINE L1 5667 5973 -1671 8 1561 499 282 30 30 chr1 128044087 128044255 -69151177 + B4 SINE B4 56 223 -69 8 1561 369 298 88 8 chr1 128044399 128044524 -69150908 + RSINE1 SINE B4 14 148 -17 9 1561 186 43 0 0 chr1 128044560 128044583 -69150849 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1561 272 48 24 0 chr1 128046183 128046225 -69149207 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 1561 1133 59 0 0 chr1 128046226 128046361 -69149071 - B1_Mus2 SINE Alu -11 136 2 9 1561 696 12 0 0 chr1 128046463 128046544 -69148888 + (TC)n Simple_repeat Simple_repeat 2 82 0 9 1561 656 206 38 8 chr1 128046545 128046677 -69148755 - B1_Mur1 SINE Alu -13 136 1 9 1561 1018 239 32 28 chr1 128046926 128047176 -69148256 - B4 SINE B4 -2 290 40 9 1561 794 11 0 10 chr1 128047201 128047297 -69148135 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 9 1561 321 177 0 0 chr1 128048018 128048080 -69147352 - B3A SINE B2 -134 64 3 9 1561 674 265 55 110 chr1 128048385 128048694 -69146738 - B4A SINE B4 0 292 1 9 1561 609 300 180 0 chr1 128049943 128050176 -69145256 - B4 SINE B4 -15 277 3 1 1561 486 273 72 6 chr1 128050822 128050988 -69144444 + B4A SINE B4 2 178 -114 1 1561 459 0 0 0 chr1 128051048 128051099 -69144333 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1561 36 40 0 0 chr1 128051192 128051242 -69144190 + AT_rich Low_complexity Low_complexity 1 50 0 1 1561 929 263 118 32 chr1 128051388 128051558 -69143874 + MTEa LTR MaLR 9 200 -179 1 1561 567 0 0 0 chr1 128051558 128051621 -69143811 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1561 929 263 118 32 chr1 128051621 128051755 -69143677 + MTEa LTR MaLR 201 346 -33 1 1561 221 0 0 33 chr1 128051755 128051785 -69143647 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1561 929 263 118 32 chr1 128051785 128051817 -69143615 + MTEa LTR MaLR 347 374 -5 1 1561 387 0 0 0 chr1 128052091 128052134 -69143298 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1 1561 530 299 99 77 chr1 128052993 128053265 -69142167 + B4 SINE B4 5 282 -10 1 1561 249 218 36 18 chr1 128053282 128053363 -69142069 + RMER17D LTR ERVK 389 469 -420 1 1561 252 0 0 0 chr1 128053363 128053391 -69142041 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1561 249 218 36 18 chr1 128053391 128053421 -69142011 + RMER17D LTR ERVK 470 502 -387 1 1561 666 254 154 0 chr1 128053642 128053843 -69141589 + B4 SINE B4 2 233 -59 1 1561 198 0 0 0 chr1 128054154 128054176 -69141256 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1561 1261 34 0 0 chr1 128054176 128054322 -69141110 - B1_Mus2 SINE Alu 0 147 2 1 1561 342 67 0 0 chr1 128054350 128054395 -69141037 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 1 1561 632 236 41 35 chr1 128054447 128054618 -69140814 - B4 SINE B4 -119 173 2 1 1561 189 371 86 0 chr1 128054824 128054940 -69140492 + MIR SINE MIR 35 160 -102 1 1561 527 249 82 48 chr1 128054986 128055193 -69140239 - B3 SINE B2 0 216 3 1 1561 303 77 0 21 chr1 128055249 128055307 -69140125 - L1_Mus3 LINE L1 -687 5949 5895 1 1561 509 144 0 0 chr1 128055309 128055400 -69140032 + L1_Mus3 LINE L1 6535 6625 -13 1 1561 1169 75 0 0 chr1 128055400 128055546 -69139886 + B1_Mm SINE Alu 2 147 0 1 1561 509 144 0 0 chr1 128055546 128055558 -69139874 + L1_Mus3 LINE L1 6626 6637 -1 1 1561 387 0 0 0 chr1 128055574 128055617 -69139815 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1561 762 231 27 114 chr1 128056330 128056550 -69138882 - B4 SINE B4 0 292 92 1 1561 585 42 0 0 chr1 128056560 128056632 -69138800 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 1 1561 363 232 17 2 chr1 128056633 128056716 -69138716 - B4 SINE B4 -69 96 12 1 1561 664 265 5 75 chr1 128056922 128057134 -69138298 + B3A SINE B2 2 198 0 1 1562 213 154 0 0 chr1 128057366 128057405 -69138027 + CT-rich Low_complexity Low_complexity 4 42 0 1 1562 377 323 193 39 chr1 128057739 128058019 -69137413 + MLT1A LTR MaLR 1 323 -51 1 1562 341 345 3 7 chr1 128058296 128058430 -69137002 + B1F1 SINE Alu 10 142 -7 1 1562 381 175 10 30 chr1 128058477 128058577 -69136855 + GA-rich Low_complexity Low_complexity 3 100 0 1 1562 1094 272 151 11 chr1 128058784 128059233 -69136199 - Lx8 LINE L1 -2 7471 6960 1 1562 314 309 83 41 chr1 128059505 128059650 -69135782 + MLT1A LTR MaLR 9 159 -215 1 1562 276 227 15 0 chr1 128060437 128060503 -69134929 + B4 SINE B4 6 72 -220 1 1562 228 67 0 0 chr1 128060503 128060533 -69134899 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1562 8378 25 11 1 chr1 128060645 128061859 -69133573 - L1Md_T LINE L1 0 6582 5351 1 1562 566 310 60 14 chr1 128062905 128063121 -69132311 + RMER15 LTR ERVL 336 561 -14 1 1562 318 26 0 0 chr1 128063161 128063200 -69132232 + (TGG)n Simple_repeat Simple_repeat 3 41 0 1 1562 576 0 0 0 chr1 128063648 128063712 -69131720 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1562 465 277 0 32 chr1 128063723 128063846 -69131586 - B3A SINE B2 -16 182 64 1 1562 236 235 148 30 chr1 128064284 128064385 -69131047 + L2b LINE L2 3259 3371 -4 1 1562 198 0 0 0 chr1 128065271 128065293 -69130139 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1562 661 279 99 26 chr1 128065300 128065532 -69129900 - B4A SINE B4 0 292 44 1 1562 378 298 62 42 chr1 128065627 128065736 -69129696 - B1F2 SINE Alu -7 110 1 1 1562 34 65 0 0 chr1 128066187 128066249 -69129183 + AT_rich Low_complexity Low_complexity 1 62 0 1 1562 234 0 0 0 chr1 128066300 128066326 -69129106 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1562 550 283 32 38 chr1 128066345 128066503 -69128929 - Lx8 LINE L1 -193 7280 7124 1 1562 457 306 58 80 chr1 128066716 128066904 -69128528 + B3A SINE B2 1 184 -11 1 1562 1471 251 32 24 chr1 128067219 128067590 -69127842 + MTE2a LTR MaLR 4 377 -2 1 1562 286 162 82 68 chr1 128067865 128067938 -69127494 + Lx8 LINE L1 5682 5792 -332 1 1562 1015 248 80 8 chr1 128068433 128068697 -69126735 - B4A SINE B4 -8 284 2 1 1562 23 0 0 0 chr1 128069149 128069172 -69126260 + AT_rich Low_complexity Low_complexity 1 23 0 1 1562 905 303 22 40 chr1 128069375 128069653 -69125779 + B4 SINE B4 2 274 -18 1 1562 2590 117 112 38 chr1 128070050 128070468 -69124964 + RLTR44B LTR ERVK 1 449 0 1 1562 186 71 0 0 chr1 128070506 128070534 -69124898 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1562 730 252 19 0 chr1 128070537 128070692 -69124740 - B3A SINE B2 -38 160 3 1 1562 1838 185 88 16 chr1 128070768 128071131 -69124301 + ORR1B1 LTR MaLR 6 394 0 1 1562 209 271 14 28 chr1 128071202 128071274 -69124158 + (TATG)n Simple_repeat Simple_repeat 4 74 0 1 1562 282 322 21 11 chr1 128071279 128071373 -69124059 - B4 SINE B4 -2 290 196 1 1562 545 272 6 58 chr1 128071373 128071545 -69123887 + B4 SINE B4 112 274 -18 1 1562 2155 148 31 0 chr1 128072130 128072487 -69122945 - Lx2B LINE L1 -251 5626 5259 1 1562 8112 131 64 9 chr1 128072488 128073808 -69121624 + Lx2B LINE L1 5600 6991 -9 1 1562 453 265 103 26 chr1 128073820 128074078 -69121354 + L1M2 LINE L1 1773 2056 -4793 1 1562 1133 101 6 0 chr1 128074078 128074257 -69121175 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1562 396 0 0 0 chr1 128074257 128074300 -69121132 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1562 453 265 103 26 chr1 128074300 128074342 -69121090 + L1M2 LINE L1 2057 2096 -4753 1 1562 623 326 26 80 chr1 128074585 128075088 -69120344 + L1M2 LINE L1 2216 2691 -4158 1 1562 1404 220 70 29 chr1 128075234 128075349 -69120083 - ORR1D1 LTR MaLR -18 356 244 1 1562 201 74 0 0 chr1 128075349 128075376 -69120056 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 1 1562 1404 220 70 29 chr1 128075376 128075602 -69119830 - ORR1D1 LTR MaLR -131 243 2 1 1562 673 278 82 72 chr1 128075602 128075878 -69119554 + MTE2a LTR MaLR 96 374 -5 1 1562 422 225 19 61 chr1 128075882 128076072 -69119360 + L1M2 LINE L1 2730 2915 -3930 1 1562 867 278 45 118 chr1 128076335 128076734 -69118698 - MTE2a LTR MaLR -9 370 1 1 1562 348 77 0 0 chr1 128076883 128076935 -69118497 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1562 270 115 0 0 chr1 128076935 128076987 -69118445 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1562 21 0 0 0 chr1 128076998 128077019 -69118413 + AT_rich Low_complexity Low_complexity 1 21 0 1 1562 403 314 89 15 chr1 128077058 128077418 -69118014 + L1PB4 LINE L1 5622 6001 -188 1 1562 398 236 46 28 chr1 128077538 128077647 -69117785 + PB1D7 SINE Alu 8 118 -2 1 1562 962 250 219 7 chr1 128078945 128079251 -69116181 + MTE2b LTR MaLR 9 379 0 1 1562 21 36 0 0 chr1 128079977 128080005 -69115427 + AT_rich Low_complexity Low_complexity 1 28 0 1 1562 444 306 8 0 chr1 128080081 128080202 -69115230 + MTEb LTR MaLR 1 122 -257 1 1562 1351 200 65 99 chr1 128080201 128080573 -69114859 - ORR1D1 LTR MaLR -7 367 9 1 1562 823 280 11 75 chr1 128080581 128080863 -69114569 + MTEb LTR MaLR 116 379 0 1 1562 428 277 87 76 chr1 128081257 128081429 -69114003 - B3A SINE B2 0 198 25 1 1562 836 312 25 60 chr1 128081462 128082139 -69113293 + L1M2 LINE L1 3238 3848 -2298 1 1562 25 31 0 0 chr1 128082143 128082175 -69113257 + AT_rich Low_complexity Low_complexity 1 32 0 1 1562 258 156 0 0 chr1 128082179 128082224 -69113208 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1562 449 238 11 0 chr1 128082228 128082351 -69113081 + L1M2 LINE L1 3822 3975 -2165 1 1562 2071 186 57 12 chr1 128082351 128082754 -69112678 + MTC LTR MaLR 1 421 0 1 1562 2481 298 41 35 chr1 128082757 128083683 -69111749 + L1M2 LINE L1 3977 4888 -1255 1 1562 519 31 0 0 chr1 128083683 128083748 -69111684 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1562 2481 298 41 35 chr1 128083748 128084087 -69111345 + L1M2 LINE L1 4889 5249 -894 1 1562 4111 74 29 38 chr1 128084089 128084649 -69110783 + L1_Mus2 LINE L1 6012 6566 0 1 1562 817 306 33 98 chr1 128087342 128087647 -69107785 + B4A SINE B4 4 288 -4 1 1562 519 45 0 0 chr1 128087651 128087717 -69107715 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1562 288 172 0 0 chr1 128087732 128087790 -69107642 + GA-rich Low_complexity Low_complexity 2 59 0 1 1562 201 250 0 19 chr1 128088196 128088249 -69107183 + GA-rich Low_complexity Low_complexity 2 53 0 1 1562 248 60 56 69 chr1 128088300 128088372 -69107060 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1562 742 268 178 8 chr1 128088373 128088614 -69106818 - B4 SINE B4 -10 282 1 1 1562 209 289 43 22 chr1 128089196 128089288 -69106144 - MIR3 SINE MIR -9 199 106 1 1562 236 238 0 0 chr1 128090196 128090238 -69105194 + L3 LINE CR1 4323 4364 -125 1 1562 1064 244 73 91 chr1 128090483 128090867 -69104565 + MTE2a LTR MaLR 1 377 -2 1 1562 2503 228 37 4 chr1 128090967 128091479 -69103953 + Lx4B LINE L1 6226 6754 -304 1 1562 263 256 11 11 chr1 128091511 128091588 -69103844 + Lx4B LINE L1 6960 7036 -22 1 1562 198 71 0 0 chr1 128091588 128091616 -69103816 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 1 1562 954 314 61 3 chr1 128091960 128092289 -69103143 + ORR1E LTR MaLR 1 348 -11 1 1562 471 48 0 0 chr1 128092500 128092562 -69102870 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1562 516 285 21 42 chr1 128092984 128093127 -69102305 + RMER30 DNA MER1_type 5 144 -58 1 1562 319 343 7 0 chr1 128093131 128093271 -69102161 + (CCCTAA)n Simple_repeat Simple_repeat 5 145 0 1 1562 21 0 0 0 chr1 128093639 128093660 -69101772 + AT_rich Low_complexity Low_complexity 1 21 0 1 1562 972 139 0 0 chr1 128093938 128094110 -69101322 + (GA)n Simple_repeat Simple_repeat 1 172 0 1 1562 2686 78 6 60 chr1 128094312 128094678 -69100754 + ORR1A1 LTR MaLR 1 346 0 1 1562 615 69 10 19 chr1 128094775 128094879 -69100553 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 2 1562 735 234 73 39 chr1 128094941 128095146 -69100286 + ID_B1 SINE B4 8 219 -5 2 1562 416 294 244 23 chr1 128096302 128096638 -69098794 + Lx8 LINE L1 7009 7419 -54 2 1562 11147 160 72 17 chr1 128096640 128099528 -69095904 + Lx6 LINE L1 520 3576 -2304 2 1562 6863 201 68 19 chr1 128099519 128101102 -69094330 + Lx6 LINE L1 4959 6607 -853 2 1562 3939 73 4 4 chr1 128101102 128101598 -69093834 + L1_Mus4 LINE L1 6141 6636 0 2 1562 6863 251 57 20 chr1 128101598 128102392 -69093040 + Lx6 LINE L1 6608 7458 -2 2 1562 262 38 72 48 chr1 128103183 128103266 -69092166 + (TTTG)n Simple_repeat Simple_repeat 2 86 0 2 1562 346 275 168 0 chr1 128103734 128103865 -69091567 + B4A SINE B4 82 234 -58 2 1562 213 302 57 0 chr1 128103925 128103978 -69091454 + RSINE1 SINE B4 97 152 -13 2 1562 534 294 53 83 chr1 128104890 128105191 -69090241 - B4 SINE B4 0 292 1 2 1562 848 267 31 0 chr1 128105196 128105391 -69090041 - B4A SINE B4 -78 214 14 2 1562 31 0 0 0 chr1 128106369 128106400 -69089032 + AT_rich Low_complexity Low_complexity 1 31 0 2 1562 341 286 129 26 chr1 128106548 128106742 -69088690 + ID_B1 SINE B4 4 217 -7 2 1562 21 0 0 0 chr1 128107154 128107175 -69088257 + AT_rich Low_complexity Low_complexity 1 21 0 2 1562 227 264 0 0 chr1 128107340 128107393 -69088039 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1562 454 316 252 50 chr1 128108013 128108254 -69087178 - B4 SINE B4 0 292 3 2 1562 261 0 0 0 chr1 128108472 128108501 -69086931 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1562 857 43 0 100 chr1 128108539 128108694 -69086738 - L1_Mus1 LINE L1 0 6567 6446 2 1562 239 208 0 20 chr1 128108694 128108743 -69086689 + ORR1E LTR MaLR 312 359 0 2 1562 321 317 30 0 chr1 128108746 128108847 -69086585 - MER2 DNA MER2_type -22 323 220 2 1562 1054 294 35 7 chr1 128108920 128109204 -69086228 - B4A SINE B4 0 292 1 2 1562 357 346 8 0 chr1 128109208 128109338 -69086094 - MER2 DNA MER2_type -128 217 87 2 1562 286 256 106 53 chr1 128110344 128110476 -69084956 + MLT1A0 LTR MaLR 210 348 -17 2 1562 312 305 36 66 chr1 128110507 128110644 -69084788 - MER5B DNA MER1_type -3 175 43 2 1562 432 376 60 40 chr1 128110871 128111123 -69084309 + B4 SINE B4 2 258 -34 2 1562 579 316 63 25 chr1 128111113 128111350 -69084082 + B4A SINE B4 46 291 -1 2 1562 1124 242 68 81 chr1 128111367 128111749 -69083683 + MTE2a LTR MaLR 3 379 0 2 1562 380 375 53 45 chr1 128111888 128112374 -69083058 + L2 LINE L2 2140 2629 -790 2 1562 213 315 0 40 chr1 128112420 128112496 -69082936 - RSINE1 SINE B4 -91 74 2 2 1562 615 294 26 5 chr1 128113772 128113967 -69081465 + B4 SINE B4 15 213 -79 2 1562 375 89 0 0 chr1 128113973 128114029 -69081403 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1562 212 239 0 0 chr1 128115431 128115477 -69079955 + CT-rich Low_complexity Low_complexity 2 47 0 2 1562 451 219 31 47 chr1 128115511 128115640 -69079792 - RSINE1 SINE B4 0 165 39 2 1562 302 365 26 0 chr1 128116212 128116327 -69079105 + RSINE1 SINE B4 46 163 -2 2 1562 979 244 31 138 chr1 128117076 128117489 -69077943 + MTE2a LTR MaLR 2 370 -9 2 1562 828 255 36 0 chr1 128117885 128118077 -69077355 - ID_B1 SINE B4 -21 203 5 2 1562 853 277 72 46 chr1 128118104 128118491 -69076941 - MTE2a LTR MaLR 0 419 17 2 1562 464 313 33 121 chr1 128119596 128119621 -69075811 - B4 SINE B4 -72 220 204 2 1562 1243 39 0 0 chr1 128119621 128119774 -69075658 + L1Md_A LINE L1 6430 6582 0 2 1562 464 313 33 121 chr1 128119774 128119988 -69075444 - B4 SINE B4 -89 203 2 2 1562 219 240 0 20 chr1 128120370 128120421 -69075011 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1562 353 314 73 66 chr1 128120871 128121130 -69074302 + B4 SINE B4 10 270 -22 2 1562 414 287 64 24 chr1 128121762 128121887 -69073545 + B4 SINE B4 3 132 -160 2 1562 483 134 0 0 chr1 128121991 128122073 -69073359 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1562 505 321 0 13 chr1 128122339 128122497 -69072935 + RSINE1 SINE B4 1 156 -9 2 1562 320 318 82 38 chr1 128122779 128123070 -69072362 + MER82 DNA MER2_type 122 425 -228 2 1562 884 225 49 31 chr1 128123065 128123290 -69072142 - ORR1E LTR MaLR -120 239 11 2 1562 215 61 30 0 chr1 128123370 128123403 -69072029 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1562 198 0 0 0 chr1 128123796 128123818 -69071614 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1562 341 174 34 51 chr1 128123873 128123976 -69071456 + B4 SINE B4 3 100 -192 2 1562 606 301 142 10 chr1 128124029 128124318 -69071114 + Lx8 LINE L1 7086 7412 -61 2 1562 592 252 0 40 chr1 128124443 128124592 -69070840 + B4 SINE B4 77 219 -73 2 1562 246 105 0 0 chr1 128124722 128124760 -69070672 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1562 1139 7 27 0 chr1 128125592 128125740 -69069692 + (GAGAA)n Simple_repeat Simple_repeat 5 156 0 2 1562 1384 198 45 7 chr1 128125875 128126031 -69069401 + MT2A LTR ERVL 1 160 -373 2 1562 432 0 0 0 chr1 128126031 128126079 -69069353 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1562 1384 169 228 20 chr1 128126079 128126377 -69069055 + MT2A LTR ERVL 161 522 -11 2 1562 436 303 54 14 chr1 128126803 128126950 -69068482 + RSINE1 SINE B4 8 160 -5 2 1562 294 291 16 0 chr1 128127247 128127374 -69068058 + GA-rich Low_complexity Low_complexity 2 130 0 2 1562 424 285 0 7 chr1 128127321 128127541 -69067891 + GA-rich Low_complexity Low_complexity 1 218 0 2 1562 626 226 144 21 chr1 128128191 128128385 -69067047 + ID_B1 SINE B4 1 218 -6 2 1562 213 378 42 0 chr1 128128543 128128662 -69066770 - L2b LINE L2 0 3375 3252 2 1562 593 286 53 10 chr1 128128748 128128956 -69066476 + B4 SINE B4 2 218 -74 2 1562 807 264 108 4 chr1 128128969 128129220 -69066212 + B4A SINE B4 10 286 -6 2 1562 216 0 0 0 chr1 128129536 128129560 -69065872 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1562 216 358 0 8 chr1 128129580 128129701 -69065731 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1562 464 282 18 0 chr1 128130218 128130328 -69065104 - B1_Mur1 SINE Alu -5 144 33 2 1562 407 301 24 60 chr1 128130368 128130534 -69064898 - ID_B1 SINE B4 0 224 65 2 1562 570 315 14 0 chr1 128131006 128131152 -69064280 + RSINE1 SINE B4 3 150 -15 2 1562 342 0 0 0 chr1 128131160 128131198 -69064234 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1562 292 202 51 76 chr1 128131533 128131651 -69063781 - PB1 SINE Alu 0 127 13 2 1562 266 234 150 38 chr1 128131598 128131731 -69063701 - B4A SINE B4 -143 149 2 2 1562 531 129 0 0 chr1 128132455 128132470 -69062962 + (A)n Simple_repeat Simple_repeat 1 15 0 2 1562 1075 115 0 0 chr1 128132470 128132618 -69062814 + B1_Mus1 SINE Alu 1 148 0 2 1562 531 129 0 0 chr1 128132618 128132695 -69062737 + (A)n Simple_repeat Simple_repeat 1 77 0 2 1562 1856 173 28 6 chr1 128132936 128133291 -69062141 + ORR1B1 LTR MaLR 24 386 -8 2 1562 910 319 71 61 chr1 128133358 128133824 -69061608 - Lx8 LINE L1 -1 7472 7003 2 1562 252 0 0 0 chr1 128133824 128133852 -69061580 + (CCA)n Simple_repeat Simple_repeat 3 30 0 2 1562 910 319 71 61 chr1 128133852 128133909 -69061523 - Lx8 LINE L1 -471 7002 6944 2 1562 412 312 111 9 chr1 128133916 128134142 -69061290 + Lx8 LINE L1 6608 6856 -617 2 1562 959 12 58 17 chr1 128134219 128134391 -69061041 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1562 526 379 4 26 chr1 128134396 128134664 -69060768 - B4 SINE B4 -28 264 3 2 1562 1230 268 89 0 chr1 128134955 128135302 -69060130 - MTEa LTR MaLR -1 378 1 2 1562 1824 263 111 2 chr1 128135737 128136222 -69059210 + Lx8 LINE L1 6595 7132 -341 2 1562 273 241 167 21 chr1 128136248 128136392 -69059040 + Lx8 LINE L1 7307 7471 -2 2 1562 466 299 14 88 chr1 128137232 128137379 -69058053 + B3A SINE B2 47 182 -16 2 1562 546 181 0 0 chr1 128137379 128137484 -69057948 + (CA)n Simple_repeat Simple_repeat 1 105 0 2 1562 835 260 121 26 chr1 128137843 128138108 -69057324 + B4 SINE B4 3 292 0 2 1562 28 29 0 0 chr1 128138134 128138169 -69057263 + AT_rich Low_complexity Low_complexity 1 35 0 2 1562 895 231 130 37 chr1 128138208 128138586 -69056846 + L1MA8 LINE L1 5872 6284 -7 2 1562 623 275 97 57 chr1 128138820 128139067 -69056365 + Tigger5 DNA MER2_type 1 257 -2149 2 1562 400 318 15 104 chr1 128139055 128139228 -69056204 + Tigger5 DNA MER2_type 2160 2314 -92 2 1562 590 249 5 121 chr1 128139228 128139434 -69055998 + B3A SINE B2 1 182 -16 2 1562 400 318 15 104 chr1 128139434 128139530 -69055902 + Tigger5 DNA MER2_type 2315 2405 -1 2 1562 360 291 29 19 chr1 128139878 128139983 -69055449 - PB1D10 SINE Alu -13 107 2 2 1562 626 215 7 22 chr1 128140119 128140257 -69055175 - MTD LTR MaLR -21 398 263 2 1562 743 281 30 50 chr1 128140317 128140579 -69054853 - MTD LTR MaLR -158 261 5 2 1562 626 241 223 45 chr1 128141750 128141997 -69053435 + B4 SINE B4 2 292 0 2 1562 198 91 0 0 chr1 128142041 128142074 -69053358 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1562 426 178 0 0 chr1 128143504 128143594 -69051838 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 1562 502 297 190 13 chr1 128143642 128143874 -69051558 - B4 SINE B4 -13 279 7 2 1562 292 272 48 39 chr1 128145059 128145263 -69050169 - MTE2a LTR MaLR -138 241 1 2 1562 484 311 122 36 chr1 128145408 128145746 -69049686 - ORR1E LTR MaLR -2 368 1 2 1562 334 323 95 0 chr1 128145756 128145914 -69049518 + MT2A LTR ERVL 356 528 -5 2 1562 357 247 11 22 chr1 128146373 128146464 -69048968 + B4A SINE B4 34 123 -169 2 1562 407 123 12 0 chr1 128146506 128146587 -69048845 + (GA)n Simple_repeat Simple_repeat 1 82 0 2 1562 369 322 8 62 chr1 128147340 128147469 -69047963 + RSINE1 SINE B4 12 133 -32 2 1562 219 357 0 0 chr1 128147540 128147624 -69047808 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1562 425 281 94 0 chr1 128148297 128148425 -69047007 + RSINE1 SINE B4 4 143 -22 2 1562 24 32 0 0 chr1 128148465 128148496 -69046936 + AT_rich Low_complexity Low_complexity 1 31 0 2 1562 459 0 0 0 chr1 128148634 128148685 -69046747 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1562 243 0 0 0 chr1 128149337 128149364 -69046068 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2 1562 505 258 56 19 chr1 128149377 128149539 -69045893 + ID_B1 SINE B4 9 176 -48 2 1562 311 281 67 19 chr1 128149455 128149560 -69045872 + PB1D7 SINE Alu 8 117 -3 3 1562 250 279 116 80 chr1 128149693 128149917 -69045515 + B4A SINE B4 67 276 -16 3 1562 799 300 12 20 chr1 128150493 128150745 -69044687 + B4 SINE B4 42 291 -1 3 1562 189 0 0 0 chr1 128151838 128151859 -69043573 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1562 333 0 0 0 chr1 128151881 128151918 -69043514 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 1562 675 311 35 13 chr1 128151932 128152163 -69043269 - B4A SINE B4 -56 236 1 3 1562 787 258 28 32 chr1 128152588 128152804 -69042628 + B4 SINE B4 76 290 -2 3 1562 292 371 6 22 chr1 128152806 128152985 -69042447 + (CATA)n Simple_repeat Simple_repeat 3 178 0 3 1562 430 294 19 50 chr1 128153974 128154135 -69041297 - B4A SINE B4 -2 290 135 3 1562 314 221 29 19 chr1 128155245 128155454 -69039978 + GA-rich Low_complexity Low_complexity 1 211 0 3 1562 1778 160 102 119 chr1 128155608 128156097 -69039335 - RMER15 LTR ERVL -2 573 93 3 1562 396 235 49 0 chr1 128156118 128156220 -69039212 + MTEb LTR MaLR 273 379 0 3 1562 409 301 32 27 chr1 128156671 128156859 -69038573 + L1PB4 LINE L1 5639 5827 -329 3 1562 2375 125 81 22 chr1 128156860 128157269 -69038163 + Lx LINE L1 6207 6639 -15 3 1562 192 297 30 30 chr1 128157606 128157672 -69037760 - MIRc SINE MIR -110 158 93 3 1562 1236 11 0 58 chr1 128157906 128158094 -69037338 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 3 1562 495 330 42 97 chr1 128158592 128158901 -69036531 + B4 SINE B4 1 292 0 3 1562 295 280 78 70 chr1 128159862 128159977 -69035455 - RSINE1 SINE B4 -5 160 45 3 1562 269 235 132 0 chr1 128160028 128160096 -69035336 + B4 SINE B4 3 79 -213 3 1562 414 274 199 18 chr1 128160146 128160317 -69035115 + B4 SINE B4 90 291 -1 3 1562 270 0 0 0 chr1 128160353 128160383 -69035049 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1562 385 326 65 69 chr1 128161957 128162247 -69033185 + B4 SINE B4 3 291 -1 3 1562 189 100 0 0 chr1 128162253 128162264 -69033168 + (CA)n Simple_repeat Simple_repeat 2 12 0 3 1562 591 40 0 0 chr1 128162264 128162338 -69033094 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1562 189 100 0 0 chr1 128162338 128162356 -69033076 + (CA)n Simple_repeat Simple_repeat 1 18 0 3 1562 300 59 0 0 chr1 128162657 128162708 -69032724 - L1_Mus3 LINE L1 0 6638 6588 3 1562 629 276 82 35 chr1 128163163 128163418 -69032014 + B4 SINE B4 1 267 -25 3 1562 369 0 0 0 chr1 128163428 128163469 -69031963 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1562 594 0 0 0 chr1 128163472 128163538 -69031894 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1562 719 249 163 29 chr1 128164049 128164375 -69031057 + MTEb LTR MaLR 6 374 -5 3 1562 293 155 0 17 chr1 128164491 128164550 -69030882 + CT-rich Low_complexity Low_complexity 2 59 0 3 1562 1055 96 0 0 chr1 128164557 128164693 -69030739 - B1_Mus1 SINE Alu -12 136 1 3 1562 664 235 103 12 chr1 128164814 128165128 -69030304 - ORR1E LTR MaLR -4 375 11 3 1562 374 278 0 0 chr1 128165141 128165231 -69030201 + B4 SINE B4 118 207 -85 3 1562 580 253 20 0 chr1 128165377 128165523 -69029909 + B1_Mur1 SINE Alu 1 149 0 3 1562 854 251 102 29 chr1 128165594 128165919 -69029513 + MTD LTR MaLR 19 380 -39 3 1562 352 354 13 0 chr1 128166424 128166582 -69028850 - RSINE1 SINE B4 -4 161 2 3 1562 185 65 0 31 chr1 128167034 128167066 -69028366 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 1562 215 289 0 0 chr1 128167100 128167152 -69028280 + CT-rich Low_complexity Low_complexity 3 54 0 3 1562 277 286 39 97 chr1 128167179 128167334 -69028098 + RMER12 LTR ERVK 703 848 -474 3 1562 452 279 137 119 chr1 128167363 128167648 -69027784 - B4A SINE B4 0 292 3 3 1562 471 48 0 0 chr1 128167778 128167840 -69027592 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1562 378 212 0 0 chr1 128167978 128168077 -69027355 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1562 693 306 68 57 chr1 128168102 128168383 -69027049 - B4A SINE B4 0 292 9 3 1562 1189 113 165 0 chr1 128168490 128168684 -69026748 + URR1A DNA MER1_type 1 226 0 3 1562 608 302 80 22 chr1 128169352 128169626 -69025806 - B4A SINE B4 0 292 3 3 1562 1709 199 81 18 chr1 128169800 128170194 -69025238 + MTD LTR MaLR 1 419 0 3 1562 1237 251 90 14 chr1 128170911 128171255 -69024177 - Lx8 LINE L1 -1 7472 7103 3 1562 258 229 0 0 chr1 128171827 128171897 -69023535 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 3 1562 1473 48 0 9 chr1 128171960 128172506 -69022926 + (TCCA)n Simple_repeat Simple_repeat 1 540 0 3 1562 221 269 38 13 chr1 128172521 128172554 -69022878 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 3 1562 366 61 0 0 chr1 128172554 128172603 -69022829 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 1562 221 269 38 13 chr1 128172603 128172648 -69022784 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 3 1562 594 51 0 0 chr1 128173010 128173088 -69022344 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1562 256 235 0 0 chr1 128173090 128173158 -69022274 + L1MA5 LINE L1 6229 6296 -4 3 1562 1556 291 5 29 chr1 128173782 128174196 -69021236 + Lx5 LINE L1 6630 7033 -17 3 1562 378 107 0 0 chr1 128174211 128174267 -69021165 + (GGA)n Simple_repeat Simple_repeat 2 57 0 3 1562 938 281 65 89 chr1 128174376 128174805 -69020627 - MTD LTR MaLR 0 419 1 3 1562 695 294 74 41 chr1 128176136 128176405 -69019027 - B4A SINE B4 -14 278 1 3 1562 228 350 90 43 chr1 128177341 128177574 -69017858 + MLT1F2 LTR MaLR 73 316 -244 3 1562 1268 295 42 8 chr1 128177583 128177942 -69017490 + MTE2b LTR MaLR 1 371 -8 3 1562 450 0 0 0 chr1 128178122 128178172 -69017260 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1562 409 309 89 18 chr1 128178193 128178361 -69017071 - Tigger7 DNA MER2_type -20 2471 2292 3 1562 234 0 0 0 chr1 128179100 128179126 -69016306 + (TGG)n Simple_repeat Simple_repeat 2 27 0 3 1562 589 225 75 90 chr1 128179686 128179886 -69015546 - B3A SINE B2 -1 197 1 3 1562 277 346 128 27 chr1 128180261 128180448 -69014984 - MIR SINE MIR -29 233 28 3 1562 506 182 90 13 chr1 128180975 128181131 -69014301 + Lx9 LINE L1 7414 7581 -63 3 1562 903 182 25 6 chr1 128181559 128181719 -69013713 + RLTR18B LTR ERVK 76 238 -274 3 1562 1578 209 3 66 chr1 128181720 128182069 -69013363 + RLTR18B LTR ERVK 186 512 0 3 1562 270 315 131 7 chr1 128182557 128182758 -69012674 - MIRb SINE MIR -34 228 7 3 1562 1007 0 20 27 chr1 128183302 128183449 -69011983 + (TTCTC)n Simple_repeat Simple_repeat 5 150 0 3 1562 669 326 17 1 chr1 128184041 128184242 -69011190 + B3A SINE B2 1 212 -4 3 1562 884 280 33 0 chr1 128184272 128184483 -69010949 + B4 SINE B4 4 221 -71 3 1562 513 115 0 0 chr1 128184496 128184574 -69010858 + (GGA)n Simple_repeat Simple_repeat 2 79 0 3 1562 862 143 0 12 chr1 128184624 128184787 -69010645 + (TA)n Simple_repeat Simple_repeat 1 161 0 3 1562 1254 220 80 45 chr1 128184998 128185350 -69010082 + ORR1C1 LTR MaLR 3 366 -12 3 1562 230 292 101 75 chr1 128185597 128185756 -69009676 - MLT1D LTR MaLR -291 214 52 3 1562 313 315 0 18 chr1 128186199 128186312 -69009120 + (TG)n Simple_repeat Simple_repeat 1 111 0 3 1562 744 123 12 0 chr1 128186798 128186961 -69008471 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 3 1562 428 280 36 52 chr1 128188076 128188268 -69007164 - B2_Mm2 SINE B2 -6 189 1 3 1563 405 0 0 0 chr1 128189282 128189327 -69006105 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1563 649 283 16 27 chr1 128189344 128189529 -69005903 - B3A SINE B2 -14 184 2 3 1563 258 221 32 0 chr1 128190120 128190215 -69005217 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 1563 189 0 0 0 chr1 128190239 128190260 -69005172 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1563 625 53 21 0 chr1 128190362 128190456 -69004976 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 1563 612 258 31 25 chr1 128190457 128190616 -69004816 - B3A SINE B2 -38 160 1 3 1563 27 0 0 0 chr1 128190925 128190952 -69004480 + AT_rich Low_complexity Low_complexity 1 27 0 3 1563 645 111 17 17 chr1 128191240 128191359 -69004073 + (GGA)n Simple_repeat Simple_repeat 2 120 0 3 1563 714 300 84 49 chr1 128191758 128192021 -69003411 + B4 SINE B4 16 287 -5 3 1563 336 83 0 0 chr1 128192044 128192092 -69003340 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1563 461 315 167 50 chr1 128192218 128192619 -69002813 + MER44D DNA MER2_type 50 497 -208 3 1563 285 29 0 0 chr1 128192640 128192674 -69002758 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1563 259 300 37 37 chr1 128192691 128192826 -69002606 + RMER15 LTR ERVL 5 139 -436 3 1563 414 0 0 0 chr1 128192872 128192918 -69002514 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1563 296 200 12 0 chr1 128192918 128192998 -69002434 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1563 222 37 0 0 chr1 128193053 128193080 -69002352 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1563 254 146 35 47 chr1 128193080 128193166 -69002266 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 3 1563 348 64 0 0 chr1 128193185 128193232 -69002200 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1563 1386 96 17 0 chr1 128194256 128194434 -69000998 - B2_Mm2 SINE B2 -14 181 1 3 1563 2978 57 3 39 chr1 128196090 128196473 -68998959 + L1_Mus2 LINE L1 6195 6563 -3 3 1563 1244 62 14 0 chr1 128196485 128196629 -68998803 + B1_Mus2 SINE Alu 2 147 0 3 1563 788 39 19 0 chr1 128196667 128196770 -68998662 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 3 1563 706 332 12 81 chr1 128197171 128197417 -68998015 + B4 SINE B4 58 286 -6 3 1563 192 40 0 0 chr1 128197431 128197456 -68997976 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1563 819 281 74 36 chr1 128198211 128198608 -68996824 + MTD LTR MaLR 1 405 -14 4 1563 397 324 169 28 chr1 128199159 128199413 -68996019 + B4A SINE B4 3 292 0 4 1563 308 378 0 11 chr1 128199419 128199601 -68995831 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 4 1563 189 121 0 0 chr1 128199617 128199650 -68995782 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1563 1217 261 71 11 chr1 128200144 128200496 -68994936 - MTE2b LTR MaLR -6 373 1 4 1563 417 280 95 52 chr1 128200706 128200885 -68994547 - B2_Mm2 SINE B2 -13 203 1 4 1563 7333 179 34 19 chr1 128201085 128202611 -68992821 + Lx5 LINE L1 5493 7050 0 4 1563 249 347 52 20 chr1 128202657 128202810 -68992622 - RMER15 LTR ERVL -73 502 345 4 1563 333 179 45 0 chr1 128203926 128203993 -68991439 + Lx5 LINE L1 6899 6968 -82 4 1563 537 278 67 53 chr1 128204021 128204230 -68991202 + MTE2a LTR MaLR 83 294 -85 4 1563 497 225 22 65 chr1 128204536 128204638 -68990794 + B4 SINE B4 115 215 -77 4 1563 183 80 0 0 chr1 128204638 128204663 -68990769 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1563 497 225 22 65 chr1 128204663 128204698 -68990734 + B4 SINE B4 216 246 -46 4 1563 221 278 0 0 chr1 128204734 128204788 -68990644 + C-rich Low_complexity Low_complexity 1 54 0 4 1563 228 212 93 124 chr1 128204790 128204919 -68990513 + LTR48B LTR ERV1 74 198 -446 4 1563 562 300 50 153 chr1 128205513 128205911 -68989521 - MTEa LTR MaLR -20 359 3 4 1563 545 186 65 242 chr1 128206218 128206282 -68989150 - MTD LTR MaLR -7 412 360 4 1563 819 168 130 0 chr1 128206282 128206413 -68989019 + B1_Mus1 SINE Alu 1 148 0 4 1563 545 186 65 242 chr1 128206413 128206575 -68988857 - MTD LTR MaLR -60 359 229 4 1563 964 90 18 71 chr1 128206575 128206743 -68988689 - L1Md_F3 LINE L1 -1 6583 6425 4 1563 545 186 65 242 chr1 128206743 128206792 -68988640 - MTD LTR MaLR -191 228 185 4 1563 3035 106 19 7 chr1 128206806 128207271 -68988161 - RLTR31B_Mm LTR ERVK -86 471 1 4 1563 229 308 15 30 chr1 128208368 128208435 -68986997 - B4A SINE B4 -10 282 217 4 1563 438 315 34 27 chr1 128208458 128208605 -68986827 - B4A SINE B4 -74 218 71 4 1563 938 293 48 24 chr1 128209390 128209768 -68985664 - Lx8 LINE L1 -97 7376 6970 4 1563 419 365 66 40 chr1 128210485 128210713 -68984719 + B4A SINE B4 1 234 -58 4 1563 450 0 0 0 chr1 128210760 128210810 -68984622 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1563 360 0 0 0 chr1 128210810 128210849 -68984583 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1563 549 297 0 51 chr1 128211025 128211181 -68984251 + RSINE1 SINE B4 18 165 0 4 1563 351 0 0 0 chr1 128211435 128211474 -68983958 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1563 359 297 98 10 chr1 128211668 128211770 -68983662 + B4 SINE B4 1 111 -181 4 1563 411 21 0 0 chr1 128211798 128211846 -68983586 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1563 538 299 19 49 chr1 128211851 128212013 -68983419 - B3A SINE B2 -38 160 4 4 1563 844 296 0 5 chr1 128212013 128212208 -68983224 + B4A SINE B4 93 286 -6 4 1563 450 173 45 0 chr1 128213300 128213433 -68981999 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 1563 378 0 0 0 chr1 128213436 128213478 -68981954 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1563 369 102 0 0 chr1 128215134 128215193 -68980239 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1563 247 149 64 0 chr1 128215207 128215254 -68980178 - B4A SINE B4 -47 245 196 4 1563 420 91 0 0 chr1 128215451 128215517 -68979915 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1563 874 198 5 117 chr1 128215707 128215904 -68979528 + B3A SINE B2 1 174 -24 4 1563 1308 67 0 0 chr1 128215904 128216084 -68979348 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1563 874 198 5 117 chr1 128216084 128216109 -68979323 + B3A SINE B2 175 198 0 4 1563 591 296 13 13 chr1 128216569 128216723 -68978709 + B3A SINE B2 1 154 -44 4 1563 375 23 0 0 chr1 128216723 128216767 -68978665 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1563 29 90 0 0 chr1 128216767 128216845 -68978587 + AT_rich Low_complexity Low_complexity 1 78 0 4 1563 392 37 19 0 chr1 128217720 128217774 -68977658 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1563 665 325 43 48 chr1 128218171 128218381 -68977051 + B4 SINE B4 6 214 -78 4 1563 995 39 8 0 chr1 128218386 128218514 -68976918 + (TC)n Simple_repeat Simple_repeat 2 130 0 4 1563 207 0 0 0 chr1 128218514 128218536 -68976896 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1563 459 0 0 0 chr1 128218618 128218669 -68976763 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1563 237 33 0 0 chr1 128219004 128219034 -68976398 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1563 771 310 43 15 chr1 128219255 128219527 -68975905 + ID_B1 SINE B4 9 292 0 4 1563 393 182 0 0 chr1 128219534 128219600 -68975832 + (CCCA)n Simple_repeat Simple_repeat 1 66 0 4 1563 624 196 0 0 chr1 128219600 128219779 -68975653 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1563 209 171 0 0 chr1 128219779 128219814 -68975618 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 4 1563 300 70 0 0 chr1 128219814 128219857 -68975575 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 4 1563 594 68 51 0 chr1 128220463 128220581 -68974851 + (TG)n Simple_repeat Simple_repeat 1 124 0 4 1563 799 313 38 11 chr1 128220581 128220843 -68974589 - B4A SINE B4 -17 275 7 4 1563 309 36 55 0 chr1 128222023 128222078 -68973354 + (TTG)n Simple_repeat Simple_repeat 2 59 0 4 1563 225 0 0 0 chr1 128222222 128222247 -68973185 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1563 569 14 14 0 chr1 128222399 128222469 -68972963 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 1563 405 0 0 0 chr1 128222702 128222747 -68972685 + (TAA)n Simple_repeat Simple_repeat 3 47 0 4 1563 462 157 0 0 chr1 128223543 128223645 -68971787 + (TCCA)n Simple_repeat Simple_repeat 3 104 0 4 1563 207 0 0 0 chr1 128223647 128223670 -68971762 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1563 261 0 0 0 chr1 128223670 128223699 -68971733 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1563 943 300 36 18 chr1 128223707 128223982 -68971450 - B4 SINE B4 -12 280 1 4 1563 684 134 0 0 chr1 128224895 128225029 -68970403 + (GA)n Simple_repeat Simple_repeat 1 134 0 4 1563 312 340 69 65 chr1 128225070 128225347 -68970085 - B4 SINE B4 -14 278 1 4 1563 265 189 22 0 chr1 128225536 128225603 -68969829 + MER5A DNA MER1_type 1 70 -119 4 1563 585 257 184 11 chr1 128226351 128226536 -68968896 + ID_B1 SINE B4 1 217 -7 4 1563 243 222 40 80 chr1 128226803 128226979 -68968453 + L1MDa LINE L1 2418 2586 -4047 4 1563 280 301 0 67 chr1 128227288 128227377 -68968055 - ID4_ SINE ID 0 83 1 4 1563 2546 149 5 18 chr1 128227485 128227868 -68967564 - ORR1C1 LTR MaLR 0 378 1 4 1563 564 301 24 215 chr1 128230704 128231364 -68964068 + RMER15 LTR ERVL 3 536 -39 4 1563 248 238 150 0 chr1 128231574 128231654 -68963778 + Tigger14a DNA MER2_type 76 167 -157 4 1563 256 196 19 19 chr1 128231842 128231894 -68963538 + B4A SINE B4 5 56 -236 4 1563 467 247 0 11 chr1 128231905 128231995 -68963437 + B4 SINE B4 204 292 0 4 1563 210 150 0 48 chr1 128232586 128232600 -68962832 + T-rich Low_complexity Low_complexity 28 40 0 4 1563 1536 89 0 5 chr1 128232600 128232793 -68962639 - B2_Mm2 SINE B2 -2 193 2 4 1563 210 150 0 48 chr1 128232793 128232820 -68962612 + T-rich Low_complexity Low_complexity 1 27 0 4 1563 569 225 197 28 chr1 128232824 128233002 -68962430 - MTC LTR MaLR -18 403 196 4 1563 180 0 0 0 chr1 128233037 128233057 -68962375 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 1563 584 161 80 0 chr1 128233057 128233169 -68962263 - Lx4A LINE L1 -3 7055 6935 4 1563 759 185 0 0 chr1 128233172 128233307 -68962125 + Lx4A LINE L1 5887 6021 -1037 4 1563 481 331 23 23 chr1 128234105 128234281 -68961151 + B3A SINE B2 5 180 -18 4 1563 278 211 178 27 chr1 128234516 128234589 -68960843 - B4 SINE B4 -206 86 3 4 1563 274 107 18 18 chr1 128235079 128235136 -68960296 + (GGA)n Simple_repeat Simple_repeat 1 57 0 4 1563 231 236 0 52 chr1 128235759 128235817 -68959615 - tRNA-Ala-GCY_ tRNA tRNA -12 63 9 4 1563 566 265 15 4 chr1 128237360 128237590 -68957842 - B4A SINE B4 -4 288 6 4 1563 459 0 0 0 chr1 128237809 128237860 -68957572 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1563 200 218 18 35 chr1 128237978 128238035 -68957397 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 4 1563 23 54 0 0 chr1 128238039 128238076 -68957356 + AT_rich Low_complexity Low_complexity 1 37 0 4 1563 235 308 0 0 chr1 128238091 128238143 -68957289 + ID2 SINE ID 7 58 -25 4 1563 600 230 128 50 chr1 128239026 128239210 -68956222 + B3A SINE B2 2 204 -12 4 1563 1343 20 0 0 chr1 128239230 128239377 -68956055 + B1_Mus2 SINE Alu 1 147 0 4 1563 189 0 0 0 chr1 128239377 128239398 -68956034 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1563 515 248 41 50 chr1 128239784 128239979 -68955453 - B3A SINE B2 -24 192 1 4 1563 264 348 66 93 chr1 128240266 128240662 -68954770 + MLT1C LTR MaLR 78 462 -5 4 1563 492 355 33 29 chr1 128240726 128240999 -68954433 + B4A SINE B4 1 274 -18 4 1563 342 0 0 0 chr1 128241016 128241054 -68954378 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1563 579 264 53 69 chr1 128241249 128241475 -68953957 + MIR SINE MIR 53 262 0 4 1563 450 234 113 74 chr1 128241544 128241674 -68953758 + B3 SINE B2 1 140 -76 4 1563 441 54 0 0 chr1 128241674 128241730 -68953702 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1563 450 234 113 74 chr1 128241730 128241802 -68953630 + B3 SINE B2 141 211 -5 4 1563 923 234 62 36 chr1 128241818 128242232 -68953200 + Lx7 LINE L1 7213 7696 0 4 1563 402 335 38 25 chr1 128242586 128242745 -68952687 - B4A SINE B4 -1 291 131 4 1563 238 261 0 28 chr1 128242912 128242983 -68952449 - B3A SINE B2 -128 70 2 4 1563 378 0 0 0 chr1 128242998 128243040 -68952392 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1563 249 182 72 43 chr1 128243041 128243110 -68952322 - B4A SINE B4 -221 71 1 5 1563 720 297 44 19 chr1 128243661 128243867 -68951565 - ID_B1 SINE B4 -11 213 3 5 1563 450 0 0 0 chr1 128244349 128244399 -68951033 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1563 935 312 7 14 chr1 128244440 128244729 -68950703 + B4A SINE B4 2 288 -4 5 1563 734 285 92 84 chr1 128245017 128245408 -68950024 + MLT1E2 LTR MaLR 1 394 -233 5 1563 462 331 61 6 chr1 128245435 128245599 -68949833 - ID_B1 SINE B4 -20 204 32 5 1563 497 326 49 49 chr1 128245624 128245850 -68949582 + MLT1E2 LTR MaLR 401 626 -1 5 1563 1129 229 37 37 chr1 128245997 128246269 -68949163 - ORR1E LTR MaLR 0 359 88 5 1563 467 191 52 65 chr1 128246270 128246494 -68948938 + RMER16 LTR ERVK 3 350 -183 5 1563 513 209 48 42 chr1 128246441 128246592 -68948840 - ORR1E LTR MaLR -223 147 1 5 1563 891 280 43 83 chr1 128247549 128247650 -68947782 + B4A SINE B4 1 94 -198 5 1563 496 268 177 8 chr1 128247650 128247774 -68947658 + B1_Mur1 SINE Alu 2 146 -3 5 1563 891 280 43 83 chr1 128247774 128247972 -68947460 + B4A SINE B4 95 288 -4 5 1563 332 333 46 33 chr1 128248933 128249085 -68946347 + HAL1-3A_ME LINE L1 2284 2437 -421 5 1563 653 279 32 7 chr1 128249690 128249845 -68945587 - RSINE1 SINE B4 -4 161 3 5 1563 188 174 21 42 chr1 128250228 128250276 -68945156 + L2 LINE L2 1391 1437 -1982 5 1563 440 18 18 0 chr1 128250294 128250351 -68945081 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1563 434 296 15 36 chr1 128250716 128250853 -68944579 + B4 SINE B4 20 153 -139 5 1563 489 34 0 0 chr1 128251476 128251535 -68943897 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 5 1563 206 304 0 42 chr1 128252057 128252129 -68943303 + GA-rich Low_complexity Low_complexity 3 71 0 5 1563 24 0 0 0 chr1 128252171 128252195 -68943237 + AT_rich Low_complexity Low_complexity 1 24 0 5 1563 378 368 0 7 chr1 128252225 128252378 -68943054 - RSINE1 SINE B4 -11 154 3 5 1563 180 292 42 0 chr1 128252694 128252742 -68942690 + MIR SINE MIR 76 125 -83 5 1563 242 196 0 19 chr1 128253072 128253124 -68942308 + 4.5SRNA scRNA scRNA 36 86 -8 5 1563 705 42 0 68 chr1 128253085 128253163 -68942269 + B1_Mm SINE Alu 51 128 -19 5 1563 6867 90 18 37 chr1 128253163 128254110 -68941322 + RLTR13B3 LTR ERVK 1 929 0 5 1563 705 42 0 68 chr1 128254110 128254134 -68941298 + B1_Mm SINE Alu 129 146 -1 5 1563 201 147 0 0 chr1 128254135 128254169 -68941263 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1563 525 298 109 58 chr1 128254176 128254450 -68940982 + B4A SINE B4 1 288 -4 5 1563 978 39 0 0 chr1 128254848 128254975 -68940457 + (TC)n Simple_repeat Simple_repeat 2 128 0 5 1563 287 240 10 0 chr1 128254975 128255079 -68940353 + (TG)n Simple_repeat Simple_repeat 1 105 0 5 1563 1367 51 45 0 chr1 128255198 128255374 -68940058 - L1Md_F3 LINE L1 -1 6583 6400 5 1563 1213 211 286 30 chr1 128255379 128255711 -68939721 - MTD LTR MaLR 0 419 3 5 1563 570 262 112 68 chr1 128255733 128255938 -68939494 - B4A SINE B4 -77 215 2 5 1563 438 20 0 0 chr1 128257360 128257411 -68938021 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1563 183 184 0 0 chr1 128257853 128257891 -68937541 + (TTGTG)n Simple_repeat Simple_repeat 2 39 0 5 1563 688 276 112 8 chr1 128258222 128258290 -68937142 - B4A SINE B4 -6 286 219 5 1563 270 0 0 0 chr1 128258290 128258320 -68937112 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 5 1563 688 276 112 8 chr1 128258320 128258510 -68936922 - B4A SINE B4 -74 218 2 5 1563 333 0 0 0 chr1 128259608 128259645 -68935787 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1563 845 271 55 32 chr1 128259744 128260053 -68935379 - L1MA7 LINE L1 -268 6023 5708 5 1563 437 353 0 0 chr1 128260541 128260674 -68934758 + RSINE1 SINE B4 4 136 -29 5 1563 487 299 82 44 chr1 128261548 128261726 -68933706 + B4 SINE B4 42 226 -66 5 1563 589 304 18 37 chr1 128261726 128261890 -68933542 + RSINE1 SINE B4 3 163 -2 5 1563 24 32 0 0 chr1 128261890 128261921 -68933511 + AT_rich Low_complexity Low_complexity 1 31 0 5 1563 442 350 47 58 chr1 128262221 128262497 -68932935 - MLT1B LTR MaLR -114 276 4 5 1563 322 226 65 0 chr1 128262658 128262720 -68932712 + B4A SINE B4 130 195 -97 5 1563 504 224 10 0 chr1 128263647 128263745 -68931687 - MTE2b LTR MaLR -14 365 267 5 1563 1195 201 14 5 chr1 128264508 128264728 -68930704 - URR1B DNA MER1_type -3 222 1 5 1563 567 164 0 0 chr1 128264902 128265006 -68930426 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1563 27 29 0 0 chr1 128265139 128265173 -68930259 + AT_rich Low_complexity Low_complexity 1 34 0 5 1563 470 312 67 43 chr1 128265533 128265741 -68929691 + MIRb SINE MIR 15 227 -41 5 1563 530 292 92 0 chr1 128265950 128266145 -68929287 + ID_B1 SINE B4 1 213 -11 5 1563 1212 259 17 53 chr1 128266339 128266641 -68928791 + B4 SINE B4 2 292 0 5 1563 211 50 24 48 chr1 128267262 128267304 -68928128 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1563 804 332 70 4 chr1 128267499 128267771 -68927661 - B4A SINE B4 -2 290 1 5 1563 211 205 0 25 chr1 128268206 128268246 -68927186 + PB1D10 SINE Alu 51 89 -28 5 1563 196 284 145 28 chr1 128269123 128269268 -68926164 - L3b LINE CR1 -121 361 200 5 1563 235 260 12 131 chr1 128269338 128269422 -68926010 + B3A SINE B2 120 193 -5 5 1563 234 278 99 11 chr1 128269666 128269679 -68925753 - BC1_Mm scRNA scRNA -53 99 1 5 1563 285 234 128 13 chr1 128269679 128269757 -68925675 - ID SINE ID -205 87 1 5 1563 252 59 0 0 chr1 128269830 128269864 -68925568 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1563 596 284 23 51 chr1 128270050 128270216 -68925216 + B3 SINE B2 1 163 -53 5 1563 360 0 0 0 chr1 128270216 128270256 -68925176 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1563 596 284 23 51 chr1 128270256 128270304 -68925128 + B3 SINE B2 164 208 -8 5 1563 432 0 0 0 chr1 128270672 128270720 -68924712 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1563 453 258 102 66 chr1 128270759 128270925 -68924507 - B4 SINE B4 -120 172 1 5 1563 492 18 0 0 chr1 128271677 128271734 -68923698 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1563 273 159 0 0 chr1 128271734 128271797 -68923635 + GA-rich Low_complexity Low_complexity 2 64 0 5 1563 186 133 0 0 chr1 128271815 128271845 -68923587 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 5 1563 333 0 0 0 chr1 128271910 128271947 -68923485 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1563 894 291 9 5 chr1 128271947 128272168 -68923264 - B4 SINE B4 -69 223 2 5 1563 1067 309 25 39 chr1 128272650 128273087 -68922345 + Lx8 LINE L1 6979 7409 -64 5 1563 371 200 28 28 chr1 128273208 128273316 -68922116 - L1_Rod LINE L1 -785 5062 4955 5 1563 548 310 62 28 chr1 128273455 128273631 -68921801 - B3A SINE B2 -16 182 1 5 1563 366 23 0 0 chr1 128274761 128274804 -68920628 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1563 303 28 0 0 chr1 128274804 128274839 -68920593 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1563 500 314 0 59 chr1 128275792 128275995 -68919437 + B3A SINE B2 2 192 -6 5 1563 418 288 39 110 chr1 128276993 128277247 -68918185 + B4A SINE B4 1 236 -56 5 1563 186 103 0 0 chr1 128277280 128277309 -68918123 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 5 1563 657 231 54 105 chr1 128277810 128278027 -68917405 + RLTR11B LTR ERVK 1 211 -242 5 1563 633 27 0 0 chr1 128278027 128278102 -68917330 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1563 657 231 54 105 chr1 128278102 128278179 -68917253 + RLTR11B LTR ERVK 212 280 -173 5 1563 751 155 6 69 chr1 128278228 128278401 -68917031 + RLTR11B LTR ERVK 277 438 -15 5 1563 660 318 18 33 chr1 128279065 128279338 -68916094 + B4A SINE B4 2 270 -22 5 1563 1869 301 86 20 chr1 128279698 128280545 -68914887 + RCHARR1 DNA MER1_type 72 974 0 5 1563 490 286 33 52 chr1 128281071 128281281 -68914151 - B3 SINE B2 -6 210 5 5 1563 724 271 77 16 chr1 128281440 128281688 -68913744 + B4A SINE B4 5 267 -25 5 1563 257 35 0 0 chr1 128281689 128281718 -68913714 + L1Md_F2 LINE L1 5557 5585 -298 5 1563 8106 45 3 8 chr1 128281719 128282717 -68912715 + L1Md_F2 LINE L1 5587 6579 -3 5 1563 261 234 0 0 chr1 128282774 128282838 -68912594 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1563 630 271 38 9 chr1 128283541 128283753 -68911679 + ID_B1 SINE B4 1 218 -6 5 1563 321 89 0 0 chr1 128283878 128283923 -68911509 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1563 252 298 24 0 chr1 128284644 128284728 -68910704 + B4A SINE B4 151 236 -56 5 1563 925 267 81 4 chr1 128284980 128285251 -68910181 + MTE2b LTR MaLR 13 304 -75 5 1563 243 0 0 0 chr1 128285833 128285860 -68909572 + (CTG)n Simple_repeat Simple_repeat 1 27 0 5 1563 369 0 0 0 chr1 128286008 128286049 -68909383 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1563 788 321 70 46 chr1 128286767 128287241 -68908191 - Lx8 LINE L1 -20 7453 6969 5 1563 476 314 107 93 chr1 128288618 128288888 -68906544 - B4 SINE B4 -18 274 1 5 1563 370 253 117 35 chr1 128290226 128290423 -68905009 + ID_B1 SINE B4 4 216 -8 5 1563 1195 277 60 28 chr1 128290456 128290853 -68904579 + Lx8 LINE L1 6861 7270 -203 5 1563 297 0 0 0 chr1 128291000 128291033 -68904399 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 5 1563 246 156 0 0 chr1 128291262 128291307 -68904125 + CT-rich Low_complexity Low_complexity 2 46 0 5 1563 207 139 0 0 chr1 128291533 128291569 -68903863 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1563 303 253 32 21 chr1 128291837 128291930 -68903502 + PB1D7 SINE Alu 17 110 -10 5 1563 287 205 12 25 chr1 128293137 128293217 -68902215 + B4 SINE B4 2 80 -212 5 1563 24 32 0 0 chr1 128293331 128293362 -68902070 + AT_rich Low_complexity Low_complexity 1 31 0 5 1563 416 258 86 7 chr1 128296363 128296515 -68898917 + RSINE1 SINE B4 2 165 0 6 1563 365 330 118 46 chr1 128296565 128296937 -68898495 + MT2A LTR ERVL 1 399 -134 6 1563 805 283 119 21 chr1 128297208 128297544 -68897888 - Lx8 LINE L1 -1 7472 7104 6 1563 233 250 17 0 chr1 128297639 128297699 -68897733 + (CATA)n Simple_repeat Simple_repeat 4 64 0 6 1563 35 24 0 0 chr1 128297699 128297741 -68897691 + AT_rich Low_complexity Low_complexity 1 42 0 6 1563 246 62 0 0 chr1 128297910 128297942 -68897490 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1563 871 223 5 37 chr1 128298230 128298421 -68897011 + B3A SINE B2 9 193 -5 6 1563 808 70 16 0 chr1 128298868 128298997 -68896435 + (TC)n Simple_repeat Simple_repeat 2 132 0 6 1563 315 0 0 0 chr1 128298997 128299031 -68896401 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1563 937 283 75 44 chr1 128299098 128299460 -68895972 + MTE2a LTR MaLR 2 374 -5 6 1563 456 305 61 46 chr1 128299482 128299678 -68895754 - B4 SINE B4 -90 202 4 6 1563 371 285 98 0 chr1 128300145 128300268 -68895164 + MLT1E2 LTR MaLR 8 142 -485 6 1563 370 325 26 26 chr1 128300303 128300496 -68894936 + MLT1E2 LTR MaLR 352 544 -83 6 1563 995 294 40 37 chr1 128300510 128300863 -68894569 + ORR1E LTR MaLR 4 357 -2 6 1563 207 326 11 11 chr1 128301270 128301363 -68894069 + GA-rich Low_complexity Low_complexity 3 95 0 6 1563 357 284 131 131 chr1 128301436 128301764 -68893668 - MTE2a LTR MaLR -51 328 1 6 1563 673 287 72 0 chr1 128302232 128302427 -68893005 + MTEa LTR MaLR 1 209 -170 6 1563 461 262 16 32 chr1 128302511 128302637 -68892795 + MTEa LTR MaLR 202 325 -54 6 1563 4126 76 4 12 chr1 128302644 128303206 -68892226 - L1Md_F2 LINE L1 0 6582 6026 6 1563 7105 50 19 0 chr1 128303206 128304209 -68891223 + L1Md_F2 LINE L1 4987 6001 -581 6 1563 342 220 13 0 chr1 128304209 128304294 -68891138 + MTEa LTR MaLR 289 379 0 6 1563 326 213 11 0 chr1 128305180 128305274 -68890158 + CT-rich Low_complexity Low_complexity 3 97 0 6 1563 249 202 121 22 chr1 128305452 128305543 -68889889 + RMER10A LTR ERVL 318 417 -25 6 1563 980 255 19 87 chr1 128305593 128305902 -68889530 + B4A SINE B4 1 288 -4 6 1563 3426 25 5 2 chr1 128305918 128306313 -68889119 + MTA_Mm LTR MaLR 1 396 0 6 1563 1024 314 68 29 chr1 128306660 128307204 -68888228 - Lx8 LINE L1 -1 7472 6908 6 1563 189 94 0 0 chr1 128307206 128307238 -68888194 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 6 1563 448 164 0 121 chr1 128307278 128307410 -68888022 - Lx9 LINE L1 -4 7640 7525 6 1563 224 147 64 39 chr1 128307413 128307491 -68887941 + (TTTAA)n Simple_repeat Simple_repeat 3 82 0 6 1563 244 295 123 18 chr1 128307549 128307663 -68887769 - B4 SINE B4 -152 140 15 6 1563 405 0 0 0 chr1 128307663 128307708 -68887724 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1563 233 254 14 141 chr1 128308216 128308358 -68887074 + B4 SINE B4 5 128 -164 6 1563 206 167 21 0 chr1 128308567 128308615 -68886817 + T-rich Low_complexity Low_complexity 4 52 0 6 1563 887 73 0 8 chr1 128308650 128308775 -68886657 + (GGGA)n Simple_repeat Simple_repeat 3 126 0 6 1563 834 208 60 15 chr1 128309092 128309292 -68886140 + B3 SINE B2 2 210 -6 6 1563 258 105 0 0 chr1 128309583 128309621 -68885811 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1563 1187 229 17 42 chr1 128309923 128310210 -68885222 + B4 SINE B4 3 282 -10 6 1563 183 80 0 0 chr1 128310760 128310785 -68884647 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1563 603 306 0 0 chr1 128311067 128311214 -68884218 + B4 SINE B4 144 290 -2 6 1563 264 30 0 0 chr1 128311311 128311344 -68884088 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1563 555 302 50 75 chr1 128312259 128312538 -68882894 + B4A SINE B4 15 286 -6 6 1563 3126 21 3 7 chr1 128312780 128313149 -68882283 + L1Md_A LINE L1 5247 5586 -297 6 1563 9104 5 0 2 chr1 128313149 128314147 -68881285 + L1Md_A LINE L1 5587 6582 0 6 1563 428 347 71 18 chr1 128315050 128315220 -68880212 + B3A SINE B2 2 180 -18 6 1563 24 32 0 0 chr1 128315477 128315508 -68879924 + AT_rich Low_complexity Low_complexity 1 31 0 6 1563 222 365 0 0 chr1 128315540 128315556 -68879876 + (TATG)n Simple_repeat Simple_repeat 3 18 0 6 1563 324 0 0 0 chr1 128315556 128315592 -68879840 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1563 222 365 0 0 chr1 128315592 128315682 -68879750 + (TATG)n Simple_repeat Simple_repeat 1 90 0 6 1563 458 318 77 0 chr1 128315701 128315871 -68879561 - B4A SINE B4 -4 288 106 6 1563 895 281 25 83 chr1 128315887 128316320 -68879112 - MTE2a LTR MaLR -15 404 1 6 1563 477 0 0 0 chr1 128316921 128316974 -68878458 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1563 546 291 119 56 chr1 128316982 128317251 -68878181 - B4A SINE B4 -1 291 6 6 1563 883 281 5 0 chr1 128317958 128318161 -68877271 + ID_B1 SINE B4 8 211 -13 6 1563 578 305 46 0 chr1 128318167 128318364 -68877068 + B4A SINE B4 2 207 -85 6 1563 514 257 16 84 chr1 128318512 128318717 -68876715 - MTD LTR MaLR -182 225 18 6 1563 351 0 0 0 chr1 128318874 128318913 -68876519 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1563 504 45 0 0 chr1 128318913 128318979 -68876453 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 1564 401 0 20 0 chr1 128319841 128319890 -68875542 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1564 3161 11 0 52 chr1 128320601 128320988 -68874444 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1564 9758 39 85 9 chr1 128320988 128322221 -68873211 + IAPEz-int LTR ERVK 8 1334 -5147 6 1564 33325 16 1 2 chr1 128322212 128325884 -68869548 + IAPEz-int LTR ERVK 2814 6481 0 6 1564 3147 14 0 52 chr1 128325884 128326271 -68869161 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1564 214 304 42 42 chr1 128326563 128326683 -68868749 + MIRc SINE MIR 3 122 -146 6 1564 396 223 10 69 chr1 128327024 128327046 -68868386 - RSINE1 SINE B4 -2 163 142 6 1564 258 56 0 0 chr1 128327046 128327082 -68868350 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 6 1564 396 223 10 69 chr1 128327082 128327160 -68868272 - RSINE1 SINE B4 -24 141 70 6 1564 275 288 0 12 chr1 128327279 128327360 -68868072 - RSINE1 SINE B4 -83 82 3 6 1564 696 254 11 28 chr1 128328934 128329112 -68866320 + B3A SINE B2 1 175 -23 6 1564 288 0 0 0 chr1 128329131 128329163 -68866269 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1564 1257 236 66 24 chr1 128329836 128330170 -68865262 + ORR1E LTR MaLR 1 348 -11 6 1564 206 177 65 0 chr1 128330643 128330705 -68864727 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1564 28 86 0 0 chr1 128330790 128330860 -68864572 + AT_rich Low_complexity Low_complexity 1 70 0 6 1564 414 333 93 79 chr1 128330917 128331400 -68864032 - L1MC4a LINE L1 -1649 6233 5744 6 1564 364 315 41 27 chr1 128331457 128331604 -68863828 + RSINE1 SINE B4 12 160 -5 6 1564 240 200 0 0 chr1 128332033 128332083 -68863349 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1564 744 267 55 33 chr1 128332125 128332396 -68863036 - B4 SINE B4 -14 278 2 6 1564 772 255 102 74 chr1 128332684 128332968 -68862464 + B4A SINE B4 1 292 0 6 1564 294 235 0 0 chr1 128332995 128333097 -68862335 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1564 375 23 0 0 chr1 128335215 128335259 -68860173 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 6 1564 595 270 66 7 chr1 128335268 128335457 -68859975 + B3A SINE B2 3 203 -13 6 1564 718 129 33 12 chr1 128335473 128335721 -68859711 + (CA)n Simple_repeat Simple_repeat 1 253 0 6 1564 338 323 61 8 chr1 128335759 128335890 -68859542 + RSINE1 SINE B4 28 165 0 6 1564 342 339 87 35 chr1 128336000 128336401 -68859031 + L1MDa LINE L1 1000 1421 -5212 6 1564 469 258 31 63 chr1 128336425 128336648 -68858784 + B3 SINE B2 1 216 0 6 1564 2166 149 92 50 chr1 128337032 128337512 -68857920 + RLTR28 LTR ERVL 25 524 0 6 1564 376 324 66 0 chr1 128337697 128337833 -68857599 + ID_B1 SINE B4 77 221 -3 6 1564 182 118 0 29 chr1 128337855 128337890 -68857542 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 6 1564 470 202 111 25 chr1 128337919 128338081 -68857351 + L1MDa LINE L1 2073 2248 -4385 6 1564 2684 163 62 13 chr1 128338131 128338587 -68856845 + RLTR20B2 LTR ERVK 1 469 -91 6 1564 333 0 0 0 chr1 128338587 128338624 -68856808 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1564 2684 163 62 13 chr1 128338624 128338701 -68856731 + RLTR20B2 LTR ERVK 470 560 0 6 1564 468 274 48 58 chr1 128338729 128338952 -68856480 + L1MDa LINE L1 2352 2576 -4057 6 1564 708 265 5 20 chr1 128338952 128339152 -68856280 + B3A SINE B2 2 198 0 6 1564 468 295 28 53 chr1 128339152 128339358 -68856074 + L1MDa LINE L1 2577 2781 -3756 6 1564 999 239 107 2 chr1 128339906 128340350 -68855082 + RMER15 LTR ERVL 1 521 -54 6 1564 230 0 0 32 chr1 128340350 128340381 -68855051 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1564 424 144 300 0 chr1 128341390 128341480 -68853952 + B3A SINE B2 2 118 -80 6 1564 25 31 0 0 chr1 128341498 128341530 -68853902 + AT_rich Low_complexity Low_complexity 1 32 0 6 1564 334 303 10 0 chr1 128342201 128342300 -68853132 - RSINE1 SINE B4 -56 109 10 6 1564 586 296 41 0 chr1 128342306 128342526 -68852906 - B4A SINE B4 -63 229 1 6 1564 305 314 148 0 chr1 128343315 128343538 -68851894 + L1MD3 LINE L1 7734 7989 -6 6 1564 991 281 14 36 chr1 128343555 128343832 -68851600 + B4 SINE B4 2 272 -20 6 1564 206 197 69 14 chr1 128345548 128345620 -68849812 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 6 1564 347 181 23 46 chr1 128346383 128346470 -68848962 + B4 SINE B4 15 99 -193 6 1564 338 333 27 0 chr1 128346777 128346924 -68848508 - Lx8 LINE L1 -505 6968 6818 6 1564 403 223 280 11 chr1 128347153 128347347 -68848085 + B4A SINE B4 2 247 -45 6 1564 22 35 0 0 chr1 128347991 128348020 -68847412 + AT_rich Low_complexity Low_complexity 1 29 0 6 1564 709 268 62 19 chr1 128348425 128348684 -68846748 + B4A SINE B4 7 276 -16 6 1564 51 0 0 0 chr1 128349062 128349113 -68846319 + AT_rich Low_complexity Low_complexity 1 51 0 6 1564 548 337 20 15 chr1 128349169 128349365 -68846067 - B3A SINE B2 -1 197 1 6 1564 374 311 122 22 chr1 128349377 128349607 -68845825 - Charlie1b DNA MER1_type -222 301 49 6 1564 382 269 6 75 chr1 128349817 128349990 -68845442 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 1564 862 284 56 35 chr1 128350171 128350459 -68844973 + Lx9 LINE L1 6462 6755 -889 6 1564 270 274 208 10 chr1 128350463 128350618 -68844814 - B4 SINE B4 -70 222 34 6 1564 641 295 121 25 chr1 128350887 128351127 -68844305 + B4 SINE B4 3 265 -27 7 1564 330 67 0 0 chr1 128351131 128351176 -68844256 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1564 650 276 58 53 chr1 128352231 128352457 -68842975 + B4 SINE B4 46 272 -20 7 1564 288 111 0 0 chr1 128352462 128352507 -68842925 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1564 404 274 15 100 chr1 128352740 128352870 -68842562 + B4A SINE B4 106 224 -68 7 1564 279 0 0 0 chr1 128353021 128353052 -68842380 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1564 24 0 0 0 chr1 128353559 128353583 -68841849 + AT_rich Low_complexity Low_complexity 1 24 0 7 1564 642 305 36 33 chr1 128354387 128354689 -68840743 + MLT1C LTR MaLR 165 467 0 7 1564 363 23 0 0 chr1 128355279 128355323 -68840109 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1564 490 319 71 71 chr1 128355359 128355585 -68839847 - B4 SINE B4 -40 252 27 7 1564 381 93 0 0 chr1 128355893 128355947 -68839485 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1564 225 0 0 0 chr1 128356280 128356305 -68839127 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 7 1564 220 296 132 69 chr1 128357496 128357670 -68837762 + B2_Mm2 SINE B2 1 185 -10 7 1564 206 125 75 0 chr1 128358450 128358490 -68836942 + C-rich Low_complexity Low_complexity 4 46 0 7 1564 313 286 87 20 chr1 128360627 128360777 -68834655 - MER82 DNA MER2_type -457 196 37 7 1564 1701 306 67 18 chr1 128360866 128361598 -68833834 + Lx8 LINE L1 6706 7473 0 7 1564 207 308 8 24 chr1 128362026 128362149 -68833283 + GA-rich Low_complexity Low_complexity 3 123 0 7 1564 373 294 0 0 chr1 128362168 128362277 -68833155 - Lx7 LINE L1 -412 7284 7176 7 1564 270 331 47 63 chr1 128362643 128362833 -68832599 + B4A SINE B4 49 235 -57 7 1564 762 43 0 0 chr1 128362846 128362940 -68832492 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1564 381 22 0 0 chr1 128362940 128362986 -68832446 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1564 785 217 106 0 chr1 128363400 128363580 -68831852 + B4 SINE B4 2 200 -92 7 1564 1335 219 127 16 chr1 128363653 128364024 -68831408 - MTD LTR MaLR -7 412 1 7 1564 465 256 60 0 chr1 128364564 128364681 -68830751 + B1F1 SINE Alu 7 130 -19 7 1564 300 27 0 0 chr1 128364713 128364750 -68830682 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1564 180 200 0 0 chr1 128364750 128364795 -68830637 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 1564 226 179 299 0 chr1 128365038 128365105 -68830327 + MLT1J2 LTR MaLR 42 128 -320 7 1564 21 71 0 0 chr1 128366224 128366266 -68829166 + AT_rich Low_complexity Low_complexity 1 42 0 7 1564 369 58 0 0 chr1 128367106 128367158 -68828274 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1564 254 327 97 0 chr1 128368283 128368396 -68827036 + RSINE1 SINE B4 1 124 -41 7 1564 231 61 0 0 chr1 128368406 128368439 -68826993 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1564 540 138 0 0 chr1 128368439 128368555 -68826877 + (GA)n Simple_repeat Simple_repeat 1 116 0 7 1564 483 60 0 0 chr1 128369588 128369655 -68825777 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1564 330 26 0 0 chr1 128369655 128369694 -68825738 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1564 573 313 32 14 chr1 128369840 128370057 -68825375 + ID_B1 SINE B4 2 222 -2 7 1564 1898 146 36 21 chr1 128370141 128370470 -68824962 + Lx5 LINE L1 6706 7039 -11 7 1564 477 110 0 0 chr1 128370470 128370543 -68824889 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 7 1564 217 236 71 42 chr1 128370822 128370990 -68824442 + (CACAC)n Simple_repeat Simple_repeat 4 176 0 7 1564 355 327 120 45 chr1 128371225 128371407 -68824025 + L1M5 LINE L1 4657 4856 -1290 7 1564 680 259 32 0 chr1 128371407 128371592 -68823840 + B3A SINE B2 1 191 -7 7 1564 355 327 120 45 chr1 128371592 128371925 -68823507 + L1M5 LINE L1 4857 5211 -935 7 1564 275 282 52 8 chr1 128371961 128372092 -68823340 + L1M5 LINE L1 5469 5605 -568 7 1564 389 304 161 15 chr1 128372125 128372262 -68823170 + B4A SINE B4 2 158 -134 7 1564 705 274 101 117 chr1 128373677 128373699 -68821733 - MTE2a LTR MaLR 0 379 360 7 1564 1980 202 37 10 chr1 128373699 128374109 -68821323 + MTC LTR MaLR 1 421 0 7 1564 705 274 101 117 chr1 128374109 128374471 -68820961 - MTE2a LTR MaLR -20 359 1 7 1564 396 319 36 36 chr1 128374892 128375032 -68820400 - Lx8 LINE L1 -182 7291 7152 7 1564 2445 100 156 14 chr1 128375384 128375800 -68819632 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1564 336 265 128 0 chr1 128376097 128376199 -68819233 + RSINE1 SINE B4 5 119 -46 7 1564 186 103 0 0 chr1 128376238 128376267 -68819165 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 7 1564 342 67 0 0 chr1 128376285 128376330 -68819102 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1564 968 221 102 60 chr1 128376516 128376857 -68818575 + ORR1E LTR MaLR 8 379 0 7 1564 260 271 0 94 chr1 128377006 128377112 -68818320 + L1MA6 LINE L1 6201 6296 -4 7 1564 241 343 19 9 chr1 128377101 128377207 -68818225 + L1MA5 LINE L1 6168 6274 -26 7 1564 273 119 0 0 chr1 128377536 128377578 -68817854 + (CAA)n Simple_repeat Simple_repeat 2 43 0 7 1564 504 298 100 36 chr1 128377832 128378083 -68817349 - B4A SINE B4 -23 269 3 7 1564 627 302 64 13 chr1 128378782 128379017 -68816415 + B4 SINE B4 42 288 -4 7 1564 204 383 24 12 chr1 128379090 128379259 -68816173 + MIR3 SINE MIR 20 190 -18 7 1564 389 331 6 39 chr1 128379510 128379692 -68815740 + C-rich Low_complexity Low_complexity 3 178 0 7 1564 226 241 15 15 chr1 128379747 128379882 -68815550 + CT-rich Low_complexity Low_complexity 1 135 0 7 1564 534 321 62 0 chr1 128380036 128380260 -68815172 + MLT1D LTR MaLR 20 257 -248 7 1564 276 280 27 27 chr1 128380317 128380427 -68815005 + MLT1D LTR MaLR 322 431 -36 7 1564 1163 271 111 45 chr1 128380631 128381138 -68814294 + Lx8 LINE L1 6926 7465 -8 7 1564 243 0 0 0 chr1 128381188 128381215 -68814217 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1564 605 237 12 0 chr1 128381841 128382014 -68813418 + (CATA)n Simple_repeat Simple_repeat 2 176 0 7 1564 434 301 151 47 chr1 128382085 128382146 -68813286 - B4A SINE B4 -6 286 222 7 1564 297 0 0 0 chr1 128382146 128382179 -68813253 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1564 434 301 151 47 chr1 128382179 128382375 -68813057 - B4A SINE B4 -71 221 4 7 1564 571 253 133 38 chr1 128382600 128382863 -68812569 + B4A SINE B4 1 288 -4 7 1564 186 133 0 0 chr1 128383892 128383922 -68811510 + (TTC)n Simple_repeat Simple_repeat 1 30 0 7 1564 526 291 114 34 chr1 128383995 128384258 -68811174 - B4A SINE B4 -8 284 1 7 1564 268 235 58 23 chr1 128384649 128384736 -68810696 - Lx8 LINE L1 -1 7472 7383 7 1564 645 280 23 70 chr1 128384754 128384814 -68810618 + Lx8 LINE L1 6609 6659 -814 7 1564 1627 190 101 25 chr1 128384814 128385171 -68810261 + ORR1C2 LTR MaLR 1 384 0 7 1564 645 280 23 70 chr1 128385171 128385367 -68810065 + Lx8 LINE L1 6660 6853 -620 7 1564 309 289 0 0 chr1 128385372 128385462 -68809970 + B3A SINE B2 53 142 -56 7 1564 342 0 0 0 chr1 128385470 128385508 -68809924 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1564 724 270 65 0 chr1 128385809 128386009 -68809423 + ID_B1 SINE B4 12 224 0 7 1564 287 250 12 0 chr1 128386899 128386983 -68808449 + MIRc SINE MIR 183 267 -1 7 1564 293 0 27 0 chr1 128387179 128387216 -68808216 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1564 22 0 0 0 chr1 128388655 128388677 -68806755 + AT_rich Low_complexity Low_complexity 1 22 0 7 1564 1199 95 0 11 chr1 128389845 128390026 -68805406 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 1564 442 35 193 34 chr1 128390222 128390310 -68805122 + L1_Mus3 LINE L1 6537 6638 0 7 1564 377 313 74 14 chr1 128391411 128391607 -68803825 - B4 SINE B4 -8 284 82 7 1564 603 301 20 0 chr1 128392097 128392250 -68803182 + RSINE1 SINE B4 6 161 -4 7 1564 631 242 13 7 chr1 128393472 128393626 -68801806 - B3 SINE B2 -59 157 3 7 1564 503 247 105 6 chr1 128394496 128394667 -68800765 + B4A SINE B4 99 286 -6 7 1564 1116 90 6 22 chr1 128394725 128394907 -68800525 + (GGGA)n Simple_repeat Simple_repeat 1 179 0 7 1564 732 123 0 0 chr1 128394916 128395030 -68800402 + (GAA)n Simple_repeat Simple_repeat 2 115 0 7 1564 868 240 17 11 chr1 128395069 128395246 -68800186 + B3A SINE B2 1 178 -20 7 1564 186 71 0 0 chr1 128395498 128395526 -68799906 + (TAAAAA)n Simple_repeat Simple_repeat 4 31 0 7 1564 3461 30 2 0 chr1 128395533 128395928 -68799504 - MTA_Mm LTR MaLR 0 396 1 7 1564 480 265 65 14 chr1 128395949 128396087 -68799345 + RSINE1 SINE B4 4 148 -17 7 1564 224 213 0 26 chr1 128396108 128396185 -68799247 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 7 1564 282 182 0 0 chr1 128396851 128396917 -68798515 + T-rich Low_complexity Low_complexity 1 66 0 7 1564 804 170 7 52 chr1 128396918 128397073 -68798359 - B1_Mus1 SINE Alu 0 148 1 7 1564 555 265 104 42 chr1 128397102 128397129 -68798303 - B3 SINE B2 -10 206 181 7 1564 351 0 0 0 chr1 128397129 128397168 -68798264 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1564 279 0 0 0 chr1 128397168 128397198 -68798234 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1564 555 265 104 42 chr1 128397198 128397362 -68798070 - B3 SINE B2 -36 180 3 7 1564 747 259 111 13 chr1 128397458 128397693 -68797739 - B4A SINE B4 -8 284 27 7 1564 776 271 137 33 chr1 128397827 128398193 -68797239 + MTD LTR MaLR 1 404 -15 7 1564 768 291 151 7 chr1 128398746 128399050 -68796382 + Lx8 LINE L1 6620 6967 -506 7 1564 342 0 0 0 chr1 128399069 128399107 -68796325 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1564 3590 145 74 11 chr1 128399116 128399775 -68795657 + RMER19A LTR ERVK 53 731 -6 7 1564 267 103 0 0 chr1 128399778 128399817 -68795615 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1564 837 93 0 0 chr1 128399817 128399945 -68795487 + (GA)n Simple_repeat Simple_repeat 2 130 0 7 1564 1533 244 158 9 chr1 128399974 128400412 -68795020 + Lx8 LINE L1 6969 7471 -2 7 1564 646 292 81 19 chr1 128400483 128400741 -68794691 + B4 SINE B4 1 274 -18 8 1564 25 51 0 0 chr1 128400902 128400941 -68794491 + AT_rich Low_complexity Low_complexity 1 39 0 8 1564 1379 195 73 0 chr1 128401194 128401481 -68793951 - Lx5 LINE L1 0 7050 6743 8 1564 787 271 73 11 chr1 128401858 128402130 -68793302 + B4 SINE B4 2 290 -2 8 1564 333 0 0 0 chr1 128402646 128402683 -68792749 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1564 740 321 17 20 chr1 128403017 128403310 -68792122 + B4A SINE B4 1 292 0 8 1564 808 262 69 11 chr1 128403768 128404030 -68791402 + B4A SINE B4 1 277 -15 8 1564 1485 188 69 20 chr1 128404030 128404261 -68791171 + ORR1D1 LTR MaLR 1 245 -129 8 1564 180 0 0 0 chr1 128404261 128404281 -68791151 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 8 1564 1485 188 69 20 chr1 128404281 128404397 -68791035 + ORR1D1 LTR MaLR 246 365 -9 8 1564 21 36 0 0 chr1 128404544 128404572 -68790860 + AT_rich Low_complexity Low_complexity 1 28 0 8 1564 277 346 110 0 chr1 128404606 128404742 -68790690 + L1M2 LINE L1 5576 5726 -571 8 1564 378 327 9 0 chr1 128404742 128404855 -68790577 + RSINE1 SINE B4 38 151 -14 8 1564 384 22 0 0 chr1 128404859 128404904 -68790528 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1564 638 312 23 9 chr1 128405522 128405742 -68789690 + B4A SINE B4 3 225 -67 8 1564 675 294 46 5 chr1 128406293 128406512 -68788920 + B4 SINE B4 1 228 -64 8 1564 1303 264 117 58 chr1 128406777 128407237 -68788195 + Lx9 LINE L1 6919 7425 -219 8 1564 189 0 0 0 chr1 128407237 128407258 -68788174 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 8 1564 1303 264 117 58 chr1 128407258 128407455 -68787977 + Lx9 LINE L1 7426 7614 -30 8 1564 779 243 25 11 chr1 128407500 128407692 -68787740 - B3A SINE B2 -25 191 2 8 1564 22 0 0 0 chr1 128408009 128408031 -68787401 + AT_rich Low_complexity Low_complexity 1 22 0 8 1564 268 231 14 58 chr1 128408751 128408820 -68786612 + ID4 SINE ID 12 77 -6 8 1564 213 258 72 41 chr1 128408986 128409083 -68786349 + B4 SINE B4 1 100 -192 8 1564 324 287 15 69 chr1 128409114 128409245 -68786187 + B4A SINE B4 169 292 0 8 1564 288 91 0 0 chr1 128409280 128409324 -68786108 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1564 396 0 0 0 chr1 128409420 128409464 -68785968 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 8 1564 952 110 0 7 chr1 128409464 128409601 -68785831 - B1_Mm SINE Alu -10 137 2 8 1564 31 26 0 0 chr1 128409610 128409648 -68785784 + AT_rich Low_complexity Low_complexity 1 38 0 8 1564 486 261 145 13 chr1 128409669 128409828 -68785604 - B3A SINE B2 -16 182 3 8 1564 22 0 0 0 chr1 128410111 128410133 -68785299 + AT_rich Low_complexity Low_complexity 1 22 0 8 1564 372 311 10 0 chr1 128410135 128410238 -68785194 + B4 SINE B4 80 183 -109 8 1564 537 16 0 0 chr1 128410521 128410583 -68784849 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1564 617 268 108 58 chr1 128410923 128411200 -68784232 + B4A SINE B4 1 291 -1 8 1564 315 0 0 0 chr1 128411220 128411255 -68784177 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1564 241 319 160 0 chr1 128411586 128411680 -68783752 - B1F SINE Alu -2 147 39 8 1564 538 330 75 0 chr1 128411605 128411793 -68783639 - ID_B1 SINE B4 -22 202 1 8 1564 661 306 75 8 chr1 128412958 128413225 -68782207 + B4A SINE B4 2 286 -6 8 1564 1166 61 0 20 chr1 128413359 128413509 -68781923 + B1_Mus1 SINE Alu 2 148 0 8 1564 700 285 80 73 chr1 128413989 128414027 -68781405 - B4 SINE B4 -1 291 271 8 1564 393 22 0 0 chr1 128414027 128414073 -68781359 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1564 700 285 80 73 chr1 128414073 128414322 -68781110 - B4 SINE B4 -22 270 2 8 1564 212 171 24 0 chr1 128415621 128415662 -68779770 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 1564 659 294 0 0 chr1 128415692 128415838 -68779594 - RSINE1 SINE B4 -2 163 18 8 1564 1051 269 7 14 chr1 128416425 128416715 -68778717 + B4 SINE B4 5 292 0 8 1564 263 169 14 0 chr1 128416715 128416786 -68778646 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1564 297 290 69 74 chr1 128417372 128417547 -68777885 + MER20 DNA MER1_type 1 174 -45 8 1564 1265 236 56 46 chr1 128417586 128417999 -68777433 - MTD LTR MaLR 0 419 3 8 1564 234 0 0 0 chr1 128418087 128418113 -68777319 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1564 393 141 0 0 chr1 128418113 128418198 -68777234 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 1564 4453 118 85 5 chr1 128418380 128419156 -68776276 - RMER17B LTR ERVK -120 838 1 8 1564 248 207 49 49 chr1 128419156 128419217 -68776215 - B4A SINE B4 -216 76 16 8 1564 749 243 147 27 chr1 128419534 128419875 -68775557 + MTD LTR MaLR 23 404 -15 8 1564 645 274 0 0 chr1 128420426 128420572 -68774860 - B3A SINE B2 -51 147 2 8 1564 369 370 0 0 chr1 128421012 128421120 -68774312 - B4 SINE B4 -4 288 181 8 1564 479 347 66 25 chr1 128422269 128422511 -68772921 + B4A SINE B4 29 280 -12 8 1564 1212 217 137 39 chr1 128422521 128422750 -68772682 + Lx8 LINE L1 7074 7345 -128 8 1564 2116 81 153 3 chr1 128422750 128423071 -68772361 + L1_Mus4 LINE L1 6268 6636 0 8 1564 1212 217 137 39 chr1 128423071 128423205 -68772227 + Lx8 LINE L1 7346 7473 0 8 1564 37 52 0 0 chr1 128424029 128424087 -68771345 + AT_rich Low_complexity Low_complexity 1 58 0 8 1564 1957 285 98 45 chr1 128424104 128425011 -68770421 - RCHARR1 DNA MER1_type -15 959 5 8 1564 618 320 64 53 chr1 128425479 128425760 -68769672 + B4 SINE B4 7 290 -2 8 1564 695 275 88 9 chr1 128426356 128426697 -68768735 - L1M2 LINE L1 -1351 4792 4425 8 1564 401 207 35 0 chr1 128427034 128427121 -68768311 - B3A SINE B2 -108 90 1 8 1564 1742 167 95 3 chr1 128427948 128428284 -68767148 + ORR1B2 LTR MaLR 1 367 0 8 1564 813 114 43 7 chr1 128428284 128428425 -68767007 + URR1A DNA MER1_type 81 226 0 8 1564 338 207 172 0 chr1 128428467 128428554 -68766878 + L1M2 LINE L1 5677 5778 -522 8 1564 570 71 0 0 chr1 128428556 128428640 -68766792 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1564 241 250 39 26 chr1 128428736 128428814 -68766618 + RSINE1 SINE B4 3 81 -84 8 1564 285 98 0 0 chr1 128429022 128429063 -68766369 + (CATA)n Simple_repeat Simple_repeat 2 42 0 8 1564 271 329 0 0 chr1 128429113 128429219 -68766213 + (TATG)n Simple_repeat Simple_repeat 1 106 0 8 1564 1027 281 12 109 chr1 128429775 128430186 -68765246 + MTE2b LTR MaLR 3 373 -6 8 1564 597 219 131 0 chr1 128430253 128430390 -68765042 + B3 SINE B2 38 192 -24 8 1564 296 352 36 7 chr1 128430471 128430611 -68764821 + MIRb SINE MIR 51 194 -74 8 1564 302 244 91 82 chr1 128430806 128431025 -68764407 + RMER5 LTR ERV1 47 267 -267 8 1564 192 179 0 0 chr1 128431106 128431145 -68764287 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1564 261 57 0 0 chr1 128431254 128431289 -68764143 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1564 867 268 52 19 chr1 128432507 128432777 -68762655 + B4A SINE B4 4 282 -10 8 1564 210 224 17 17 chr1 128432802 128432861 -68762571 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 8 1564 279 0 0 0 chr1 128432862 128432893 -68762539 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1564 324 0 0 0 chr1 128432893 128432928 -68762504 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1564 195 233 136 64 chr1 128434246 128434356 -68761076 - MER5A DNA MER1_type -52 137 20 8 1564 333 0 0 0 chr1 128434573 128434610 -68760822 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1564 424 237 72 0 chr1 128434640 128434737 -68760695 - MTE2b LTR MaLR -256 123 20 8 1564 257 190 19 84 chr1 128434786 128434941 -68760491 - RMER17D2 LTR ERVK -414 395 251 8 1564 276 30 0 0 chr1 128435392 128435425 -68760007 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1564 228 312 60 43 chr1 128435929 128436046 -68759386 - MER5A DNA MER1_type -25 164 46 8 1564 339 270 70 0 chr1 128436887 128436987 -68758445 - RSINE1 SINE B4 -17 148 42 8 1564 1221 106 0 0 chr1 128439445 128439625 -68755807 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1564 427 272 66 33 chr1 128440418 128440570 -68754862 - MER5A DNA MER1_type -29 160 4 8 1564 287 314 39 100 chr1 128440756 128440986 -68754446 - Lx8 LINE L1 -24 7449 7234 8 1564 1058 122 7 0 chr1 128442199 128442346 -68753086 - B1_Mus1 SINE Alu 0 148 1 8 1564 369 215 45 39 chr1 128442477 128442656 -68752776 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 1564 300 70 0 0 chr1 128443110 128443153 -68752279 + (TATG)n Simple_repeat Simple_repeat 2 44 0 8 1564 620 295 69 17 chr1 128443175 128443406 -68752026 - B4A SINE B4 0 292 50 8 1564 319 264 0 11 chr1 128444118 128444206 -68751226 + B4 SINE B4 1 87 -205 8 1564 390 175 19 19 chr1 128445512 128445617 -68749815 + GA-rich Low_complexity Low_complexity 5 109 0 8 1564 784 274 26 13 chr1 128445667 128445893 -68749539 - B4A SINE B4 -63 229 1 8 1564 21 0 0 0 chr1 128445983 128446004 -68749428 + AT_rich Low_complexity Low_complexity 1 21 0 8 1564 306 0 0 0 chr1 128446285 128446319 -68749113 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 1564 1034 286 3 40 chr1 128446642 128446944 -68748488 - B4 SINE B4 0 292 2 8 1564 265 322 124 0 chr1 128447088 128447209 -68748223 - B4 SINE B4 -155 137 2 8 1564 204 40 0 0 chr1 128447967 128447992 -68747440 + (TTA)n Simple_repeat Simple_repeat 3 27 0 8 1564 378 0 0 0 chr1 128448134 128448176 -68747256 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1564 579 188 0 0 chr1 128448177 128448294 -68747138 + (TA)n Simple_repeat Simple_repeat 2 118 0 8 1564 617 276 64 15 chr1 128448294 128448496 -68746936 + ID_B1 SINE B4 3 214 -10 8 1564 489 84 0 0 chr1 128448499 128448570 -68746862 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1564 418 323 48 26 chr1 128448593 128448866 -68746566 - B4A SINE B4 -12 280 2 9 1564 425 307 7 28 chr1 128449075 128449219 -68746213 + ID_B1 SINE B4 16 156 -68 9 1564 233 208 300 143 chr1 128450136 128450256 -68745176 + RSINE1 SINE B4 3 145 -20 9 1564 459 0 0 0 chr1 128450256 128450307 -68745125 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1564 233 208 300 143 chr1 128450307 128450326 -68745106 + RSINE1 SINE B4 146 164 -1 9 1564 396 59 0 0 chr1 128450454 128450505 -68744927 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 1565 261 119 0 0 chr1 128450816 128450858 -68744574 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1565 872 282 78 0 chr1 128451514 128451783 -68743649 + B4A SINE B4 3 292 0 9 1565 195 146 0 0 chr1 128451788 128451829 -68743603 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1565 252 365 19 0 chr1 128451878 128451985 -68743447 + PB1D10 SINE Alu 7 115 -2 9 1565 958 234 45 45 chr1 128452189 128452480 -68742952 - B4A SINE B4 0 292 2 9 1565 22 0 0 0 chr1 128452850 128452872 -68742560 + AT_rich Low_complexity Low_complexity 1 22 0 9 1565 768 266 12 0 chr1 128452888 128453057 -68742375 - B3A SINE B2 -25 173 3 9 1565 501 17 0 0 chr1 128453371 128453429 -68742003 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1565 330 98 0 0 chr1 128453673 128453724 -68741708 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1565 477 244 69 0 chr1 128453930 128454061 -68741371 + MTEb LTR MaLR 116 255 -124 9 1565 193 29 29 29 chr1 128455014 128455049 -68740383 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 9 1565 321 280 75 0 chr1 128455104 128455211 -68740221 - B4 SINE B4 -69 223 109 9 1565 461 47 16 0 chr1 128455997 128456061 -68739371 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1565 414 252 9 36 chr1 128456063 128456174 -68739258 - RSINE1 SINE B4 -14 151 44 9 1565 799 269 32 14 chr1 128456202 128456421 -68739011 - B4A SINE B4 -68 224 2 9 1565 462 36 0 0 chr1 128456734 128456790 -68738642 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 9 1565 606 204 207 12 chr1 128456816 128456838 -68738594 - B3 SINE B2 -14 202 180 9 1565 540 0 0 0 chr1 128456838 128456898 -68738534 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1565 606 204 207 12 chr1 128456898 128457039 -68738393 - B3 SINE B2 -37 179 8 9 1565 279 0 0 0 chr1 128457389 128457420 -68738012 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1565 468 0 0 0 chr1 128457420 128457471 -68737961 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1565 2560 259 64 58 chr1 128457529 128458472 -68736960 + RCHARR1 DNA MER1_type 27 974 0 9 1565 570 240 97 11 chr1 128458517 128458702 -68736730 + ID_B1 SINE B4 23 223 -1 9 1565 513 0 0 0 chr1 128458783 128458840 -68736592 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1565 554 249 145 88 chr1 128459057 128459374 -68736058 + MTE2a LTR MaLR 43 377 -2 9 1565 339 339 25 50 chr1 128459565 128459764 -68735668 - ORR1E LTR MaLR -165 194 1 9 1565 290 303 54 87 chr1 128459896 128460198 -68735234 + B4A SINE B4 2 278 -14 9 1565 539 271 56 6 chr1 128461045 128461205 -68734227 - B3A SINE B2 -28 170 3 9 1565 200 86 29 0 chr1 128461552 128461587 -68733845 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1565 243 140 35 0 chr1 128462405 128462462 -68732970 + (CAA)n Simple_repeat Simple_repeat 3 61 0 9 1565 314 280 206 8 chr1 128462467 128462593 -68732839 + B4 SINE B4 83 233 -59 9 1565 210 300 0 0 chr1 128462604 128462654 -68732778 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1565 530 260 147 6 chr1 128462949 128463119 -68732313 + MER58A DNA MER1_type 30 223 -1 9 1565 208 241 0 18 chr1 128463414 128463469 -68731963 + GA-rich Low_complexity Low_complexity 6 59 0 9 1565 756 141 0 0 chr1 128463471 128463606 -68731826 + (GGGA)n Simple_repeat Simple_repeat 2 136 0 9 1565 327 274 132 7 chr1 128463616 128463752 -68731680 - L1MC4a LINE L1 -361 7521 7369 9 1565 198 0 0 0 chr1 128463907 128463929 -68731503 + (CAA)n Simple_repeat Simple_repeat 2 23 0 9 1565 378 0 0 0 chr1 128464231 128464273 -68731159 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 1565 629 294 21 21 chr1 128465138 128465326 -68730106 - B3A SINE B2 -6 192 5 9 1565 801 250 29 14 chr1 128465516 128465723 -68729709 + B3 SINE B2 1 210 -6 9 1565 306 0 0 0 chr1 128465742 128465776 -68729656 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1565 643 140 0 27 chr1 128465782 128465892 -68729540 - B1_Mur3 SINE Alu -13 136 30 9 1565 290 250 0 80 chr1 128465817 128465917 -68729515 - MT2B LTR ERVL -344 257 166 9 1565 277 227 0 29 chr1 128465910 128465978 -68729454 + PB1D7 SINE Alu 51 116 -4 9 1565 811 218 86 25 chr1 128466603 128466801 -68728631 + B3 SINE B2 1 210 -6 9 1565 668 253 7 0 chr1 128466837 128466991 -68728441 + RSINE1 SINE B4 11 165 0 9 1565 839 282 8 8 chr1 128468176 128468412 -68727020 + B4 SINE B4 13 248 -44 9 1565 399 56 0 0 chr1 128468424 128468478 -68726954 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1565 203 88 29 0 chr1 128468815 128468849 -68726583 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 9 1565 507 266 72 0 chr1 128468872 128469011 -68726421 - RSINE1 SINE B4 -15 150 2 9 1565 408 111 0 0 chr1 128469140 128469203 -68726229 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1565 420 288 215 0 chr1 128469805 128469968 -68725464 + B3 SINE B2 9 206 -10 9 1565 288 320 82 10 chr1 128470170 128470268 -68725164 - RSINE1 SINE B4 -57 108 4 9 1565 604 305 103 23 chr1 128471946 128472208 -68723224 + B4A SINE B4 2 284 -8 9 1565 222 37 0 0 chr1 128472214 128472241 -68723191 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1565 250 283 17 0 chr1 128473552 128473612 -68721820 + L2 LINE L2 2416 2476 -943 9 1565 2417 128 42 22 chr1 128474108 128474605 -68720827 + L1_Mus3 LINE L1 6041 6566 0 9 1565 378 0 0 0 chr1 128475731 128475773 -68719659 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1565 354 303 107 46 chr1 128475976 128476239 -68719193 + B4 SINE B4 2 280 -12 9 1565 472 208 250 23 chr1 128476692 128476709 -68718723 - B3 SINE B2 -5 211 195 9 1565 414 0 0 0 chr1 128476709 128476755 -68718677 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1565 472 208 250 23 chr1 128476755 128476909 -68718523 - B3 SINE B2 -22 194 2 9 1565 340 267 119 33 chr1 128477097 128477248 -68718184 - MLT1C LTR MaLR -171 296 133 9 1565 1078 285 48 30 chr1 128477261 128477633 -68717799 - MTE2a LTR MaLR 0 379 1 9 1565 893 269 10 69 chr1 128477688 128477992 -68717440 - B4A SINE B4 -4 288 3 9 1565 2385 213 38 6 chr1 128478019 128478547 -68716885 + RLTR20B2 LTR ERVK 2 546 -14 9 1565 373 300 84 104 chr1 128479639 128479937 -68715495 + B4A SINE B4 1 292 0 9 1565 232 72 40 80 chr1 128479937 128480012 -68715420 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 1565 557 163 30 0 chr1 128480047 128480182 -68715250 + (CA)n Simple_repeat Simple_repeat 1 139 0 9 1565 180 111 0 0 chr1 128480578 128480605 -68714827 + (CATA)n Simple_repeat Simple_repeat 4 30 0 9 1565 612 146 0 0 chr1 128480661 128480764 -68714668 + (CATA)n Simple_repeat Simple_repeat 4 106 0 9 1565 567 255 93 47 chr1 128480908 128481101 -68714331 - B3 SINE B2 -5 211 10 9 1565 780 234 10 48 chr1 128481465 128481672 -68713760 + ORR1E LTR MaLR 5 203 -156 9 1565 326 206 0 0 chr1 128481695 128481758 -68713674 + ORR1E LTR MaLR 288 350 -29 9 1565 334 336 92 48 chr1 128481783 128482080 -68713352 - ORR1E LTR MaLR -6 353 41 9 1565 3488 43 0 5 chr1 128482080 128482501 -68712931 - L1Md_F2 LINE L1 -8 6574 6156 9 1565 334 336 92 48 chr1 128482501 128482540 -68712892 - ORR1E LTR MaLR -319 40 2 9 1565 440 311 8 98 chr1 128483083 128483329 -68712103 + B4A SINE B4 68 292 0 9 1565 180 0 0 0 chr1 128483345 128483365 -68712067 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1565 399 100 0 0 chr1 128483967 128484037 -68711395 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1565 349 312 71 0 chr1 128484037 128484149 -68711283 - RSINE1 SINE B4 -45 120 1 9 1565 284 175 0 16 chr1 128484293 128484357 -68711075 + GA-rich Low_complexity Low_complexity 2 64 0 9 1565 186 43 0 0 chr1 128485004 128485027 -68710405 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 1565 438 20 0 0 chr1 128485927 128485978 -68709454 + (GGGGA)n Simple_repeat Simple_repeat 2 52 0 9 1565 206 270 80 62 chr1 128486024 128486186 -68709246 + L2b LINE L2 2929 3093 -282 9 1565 925 296 75 50 chr1 128486379 128486778 -68708654 + MT2A LTR ERVL 1 409 -124 9 1565 330 180 135 0 chr1 128488411 128488500 -68706932 - BC1_Mm scRNA scRNA -44 108 8 9 1565 266 270 112 0 chr1 128488599 128488688 -68706744 + B3A SINE B2 2 100 -98 9 1565 296 322 48 7 chr1 128488787 128488934 -68706498 + MER2 DNA MER2_type 92 244 -101 9 1565 519 165 0 0 chr1 128489029 128489138 -68706294 + CT-rich Low_complexity Low_complexity 2 110 0 9 1565 347 298 30 15 chr1 128489320 128489453 -68705979 + MT2A LTR ERVL 3 137 -396 9 1565 1208 243 84 6 chr1 128489336 128489671 -68705761 + MTEa LTR MaLR 19 379 0 9 1565 689 300 93 53 chr1 128490112 128490584 -68704848 - LTR82A LTR ERVL -115 757 267 9 1565 520 70 23 0 chr1 128490614 128490700 -68704732 + (TG)n Simple_repeat Simple_repeat 1 88 0 9 1565 357 206 0 4 chr1 128490778 128490859 -68704573 - B3A SINE B2 -114 81 3 9 1565 3220 70 2 0 chr1 128490901 128491300 -68704132 - MTB LTR MaLR 0 400 1 9 1565 450 49 0 0 chr1 128493152 128493213 -68702219 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1565 596 238 8 0 chr1 128493674 128493796 -68701636 + RSINE1 SINE B4 2 124 -41 9 1565 339 25 0 0 chr1 128493796 128493836 -68701596 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1565 477 0 0 0 chr1 128494472 128494525 -68700907 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1565 475 183 140 0 chr1 128494642 128494735 -68700697 + RSINE1 SINE B4 21 126 -39 1 1565 637 258 20 7 chr1 128494794 128494946 -68700486 + RSINE1 SINE B4 2 155 -10 1 1565 617 279 27 57 chr1 128495367 128495663 -68699769 - B4A SINE B4 -2 290 4 1 1565 577 242 67 97 chr1 128495762 128496000 -68699432 + B4A SINE B4 2 232 -60 1 1565 535 92 0 0 chr1 128496287 128496363 -68699069 + B1_Mus2 SINE Alu 62 137 -10 1 1565 423 0 0 0 chr1 128496363 128496410 -68699022 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1565 791 217 72 0 chr1 128496629 128496781 -68698651 + RSINE1 SINE B4 3 165 0 1 1565 243 88 0 0 chr1 128496799 128496833 -68698599 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1 1565 590 80 23 0 chr1 128496967 128497055 -68698377 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 1 1565 687 313 42 42 chr1 128497913 128498200 -68697232 + B4A SINE B4 6 292 0 1 1565 180 158 0 0 chr1 128498551 128498589 -68696843 + A-rich Low_complexity Low_complexity 1 38 0 1 1565 382 278 35 0 chr1 128498604 128498719 -68696713 + MTEa LTR MaLR 1 119 -260 1 1565 483 224 0 18 chr1 128498713 128498822 -68696610 + MTEa LTR MaLR 269 375 -4 1 1565 24 0 0 0 chr1 128499198 128499222 -68696210 + AT_rich Low_complexity Low_complexity 1 24 0 1 1565 826 234 8 85 chr1 128499423 128499671 -68695761 + B4 SINE B4 46 274 -18 1 1565 234 0 0 0 chr1 128499676 128499702 -68695730 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1565 627 212 135 35 chr1 128500153 128500353 -68695079 + B4A SINE B4 21 240 -52 1 1565 414 127 0 0 chr1 128500353 128500424 -68695008 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1565 1362 222 51 11 chr1 128501657 128502007 -68693425 + MTEa LTR MaLR 1 364 -15 3 1565 638 296 39 19 chr1 128502218 128502425 -68693007 + ID_B1 SINE B4 1 211 -13 4 1565 430 264 146 71 chr1 128503796 128504049 -68691383 - B4 SINE B4 -20 272 1 5 1565 249 277 39 29 chr1 128504292 128504396 -68691036 - PB1D10 SINE Alu -11 106 2 6 1565 789 71 0 0 chr1 128504397 128504510 -68690922 + (TC)n Simple_repeat Simple_repeat 1 113 0 7 1565 622 269 19 12 chr1 128504991 128505153 -68690279 - RSINE1 SINE B4 0 165 3 8 1565 23 78 0 0 chr1 128505156 128505207 -68690225 + AT_rich Low_complexity Low_complexity 1 51 0 9 1565 853 290 17 28 chr1 128505378 128505669 -68689763 + B4 SINE B4 5 292 0 1 1565 1318 224 92 14 chr1 128505931 128506280 -68689152 + MTE2b LTR MaLR 3 378 -1 1 1565 770 261 34 0 chr1 128506681 128506857 -68688575 + B3A SINE B2 1 182 -16 1 1565 192 234 0 0 chr1 128506878 128506925 -68688507 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1565 312 27 0 0 chr1 128507157 128507194 -68688238 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1565 459 0 0 0 chr1 128507194 128507244 -68688188 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1565 297 0 0 0 chr1 128507329 128507362 -68688070 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1565 290 182 12 94 chr1 128507970 128508055 -68687377 + B3 SINE B2 20 97 -119 1 1565 531 211 98 0 chr1 128508469 128508602 -68686830 + B3 SINE B2 70 215 -1 1 1565 300 176 59 0 chr1 128508776 128508865 -68686567 + MTE2b LTR MaLR 278 379 0 1 1565 509 298 182 13 chr1 128508959 128509190 -68686242 + B4A SINE B4 4 273 -19 1 1565 889 241 15 0 chr1 128509590 128509785 -68685647 - B3A SINE B2 0 198 1 2 1565 383 263 0 0 chr1 128510475 128510551 -68684881 - RSINE1 SINE B4 -81 84 9 2 1565 929 324 8 36 chr1 128510804 128510979 -68684453 - L1_Rod LINE L1 -1 5846 5674 2 1565 3924 149 52 19 chr1 128510979 128511711 -68683721 - RMER6A LTR ERVK 0 756 1 2 1565 929 324 8 36 chr1 128511711 128511925 -68683507 - L1_Rod LINE L1 -174 5673 5468 2 1565 21 36 0 0 chr1 128511927 128511955 -68683477 + AT_rich Low_complexity Low_complexity 1 28 0 2 1565 590 302 6 30 chr1 128512037 128512204 -68683228 - B4A SINE B4 -128 164 2 2 1565 468 241 191 97 chr1 128512521 128512788 -68682644 + B4A SINE B4 1 292 0 2 1565 818 269 56 36 chr1 128513158 128513409 -68682023 - B4 SINE B4 -6 286 31 2 1565 576 361 21 21 chr1 128514902 128515137 -68680295 - B4A SINE B4 0 292 58 2 1565 780 230 12 0 chr1 128515136 128515301 -68680131 - ID_B1 SINE B4 -55 169 3 2 1565 834 229 79 82 chr1 128516171 128516355 -68679077 + B4 SINE B4 12 211 -81 3 1565 497 239 120 43 chr1 128516355 128516539 -68678893 + B3A SINE B2 1 198 0 3 1565 834 229 79 82 chr1 128516539 128516578 -68678854 + B4 SINE B4 212 236 -56 3 1565 3445 23 5 0 chr1 128516578 128516972 -68678460 + MTA_Mm LTR MaLR 1 396 0 3 1565 834 229 79 82 chr1 128516972 128517027 -68678405 + B4 SINE B4 237 290 -2 3 1565 216 67 0 0 chr1 128517030 128517060 -68678372 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1565 276 30 0 0 chr1 128517265 128517298 -68678134 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 3 1565 470 308 48 7 chr1 128517434 128517581 -68677851 + B3A SINE B2 1 153 -45 3 1565 255 125 0 0 chr1 128517601 128517641 -68677791 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1565 963 204 6 11 chr1 128518015 128518198 -68677234 + ID_B1 SINE B4 37 218 -6 3 1565 720 267 24 5 chr1 128518383 128518590 -68676842 + B3 SINE B2 1 211 -5 3 1565 414 202 0 0 chr1 128519312 128519470 -68675962 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 1565 655 307 0 0 chr1 128519493 128519656 -68675776 - B3A SINE B2 -35 163 1 4 1565 318 50 0 0 chr1 128519814 128519854 -68675578 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1565 231 125 0 0 chr1 128519854 128519894 -68675538 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1565 396 0 0 0 chr1 128520038 128520082 -68675350 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1565 222 128 0 0 chr1 128520154 128520193 -68675239 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1565 791 260 102 4 chr1 128520203 128520458 -68674974 - B4A SINE B4 -12 280 1 4 1565 237 83 0 0 chr1 128521500 128521536 -68673896 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1565 514 311 0 32 chr1 128521745 128521931 -68673501 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1565 372 326 8 0 chr1 128522020 128522152 -68673280 + (CATA)n Simple_repeat Simple_repeat 4 136 0 4 1565 1393 95 16 0 chr1 128522321 128522510 -68672922 - B2_Mm2 SINE B2 -3 192 1 4 1565 422 269 54 196 chr1 128522655 128522895 -68672537 + ID_B1 SINE B4 19 224 0 5 1565 238 250 17 0 chr1 128523275 128523335 -68672097 - B4 SINE B4 -94 198 138 5 1565 315 305 19 9 chr1 128523357 128523463 -68671969 + CT-rich Low_complexity Low_complexity 3 109 0 5 1565 539 335 17 34 chr1 128523468 128523647 -68671785 - B3A SINE B2 -21 177 2 5 1565 413 216 10 0 chr1 128523647 128523742 -68671690 - B4 SINE B4 -194 98 3 5 1565 2941 31 16 144 chr1 128523996 128524441 -68670991 - RLTR10 LTR ERVK -2 388 1 5 1565 8966 20 0 0 chr1 128524443 128525438 -68669994 - RLTR10-int LTR ERVK -3 1984 990 5 1565 7934 31 1 0 chr1 128525532 128526444 -68668988 - RLTR10-int LTR ERVK -1034 953 41 5 1565 2941 31 16 144 chr1 128526456 128526901 -68668531 - RLTR10 LTR ERVK -2 388 1 5 1565 470 198 216 0 chr1 128527386 128527502 -68667930 + RSINE1 SINE B4 3 143 -22 5 1565 213 94 0 0 chr1 128527510 128527542 -68667890 + (CATG)n Simple_repeat Simple_repeat 3 34 0 5 1565 378 0 0 0 chr1 128527543 128527585 -68667847 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1565 354 45 0 0 chr1 128528339 128528383 -68667049 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1565 2337 149 79 5 chr1 128528713 128529105 -68666327 + MTC LTR MaLR 1 421 0 5 1565 328 283 117 0 chr1 128529449 128529569 -68665863 + B4A SINE B4 3 136 -156 6 1565 565 285 249 0 chr1 128530342 128530567 -68664865 - B4 SINE B4 0 292 12 6 1565 708 304 10 5 chr1 128531299 128531501 -68663931 - B4A SINE B4 -23 269 67 6 1565 737 285 97 12 chr1 128531753 128532012 -68663420 - B4 SINE B4 -6 286 6 6 1565 282 56 0 0 chr1 128532564 128532600 -68662832 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1565 314 229 0 0 chr1 128532600 128532670 -68662762 - B3A SINE B2 -127 71 2 6 1565 387 0 0 0 chr1 128532787 128532830 -68662602 + (ATG)n Simple_repeat Simple_repeat 1 43 0 6 1565 379 253 0 40 chr1 128532999 128533098 -68662334 + ORR1E LTR MaLR 3 97 -262 6 1565 515 145 0 0 chr1 128533107 128533190 -68662242 - B1_Mus2 SINE Alu -3 144 62 6 1565 649 237 193 18 chr1 128533188 128533416 -68662016 + ORR1E LTR MaLR 90 357 -2 6 1565 225 322 0 0 chr1 128533531 128533590 -68661842 - MER5A DNA MER1_type -1 188 130 6 1565 531 303 182 26 chr1 128533705 128533952 -68661480 + B4A SINE B4 2 286 -6 7 1565 396 0 0 0 chr1 128533953 128533997 -68661435 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1565 468 0 0 0 chr1 128533997 128534048 -68661384 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1565 354 272 0 68 chr1 128534901 128535012 -68660420 - L1MA4A LINE L1 -370 5930 5825 7 1565 2087 160 32 42 chr1 128535012 128535390 -68660042 - ORR1C1 LTR MaLR -4 374 1 7 1565 340 272 0 68 chr1 128535390 128535424 -68660008 - L1MA4A LINE L1 -476 5824 5795 7 1565 231 36 0 0 chr1 128535775 128535803 -68659629 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1565 450 0 0 0 chr1 128535803 128535852 -68659580 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1565 953 111 0 0 chr1 128536240 128536384 -68659048 + URR1B DNA MER1_type 82 225 0 7 1565 1273 253 21 3 chr1 128536596 128536878 -68658554 + B4 SINE B4 2 288 -4 7 1565 264 275 0 0 chr1 128536883 128536952 -68658480 + (CATA)n Simple_repeat Simple_repeat 2 70 0 7 1565 376 234 13 0 chr1 128538004 128538081 -68657351 + B4A SINE B4 1 78 -214 8 1565 28 0 0 0 chr1 128538460 128538488 -68656944 + AT_rich Low_complexity Low_complexity 1 28 0 8 1565 1000 266 100 4 chr1 128538691 128538951 -68656481 + B4 SINE B4 1 285 -7 8 1565 315 130 0 0 chr1 128538953 128539007 -68656425 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1565 43 20 0 0 chr1 128539247 128539297 -68656135 + AT_rich Low_complexity Low_complexity 1 50 0 8 1565 2698 229 56 4 chr1 128540245 128541020 -68654412 - Lx5 LINE L1 -574 6886 5843 8 1565 1981 249 22 39 chr1 128541022 128541514 -68653918 + Lx5 LINE L1 6566 7049 -1 8 1565 429 54 0 0 chr1 128541559 128541615 -68653817 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1565 495 369 46 0 chr1 128541681 128541922 -68653510 - B4A SINE B4 -25 267 16 8 1565 1802 158 122 17 chr1 128542542 128542903 -68652529 + Lx5 LINE L1 6651 7049 -1 8 1565 578 295 26 0 chr1 128543265 128543455 -68651977 - ID_B1 SINE B4 -28 196 2 9 1565 343 250 24 16 chr1 128545930 128546056 -68649376 + (TG)n Simple_repeat Simple_repeat 2 128 0 9 1565 465 285 143 9 chr1 128546131 128546347 -68649085 - B4A SINE B4 -47 245 1 9 1565 598 353 34 4 chr1 128546545 128546784 -68648648 + B4A SINE B4 35 280 -12 9 1565 311 259 12 12 chr1 128548973 128549055 -68646377 + ID4 SINE ID 2 83 0 9 1565 489 332 5 45 chr1 128549316 128549515 -68645917 - ORR1E LTR MaLR -163 196 6 9 1565 446 350 6 0 chr1 128549899 128550056 -68645376 - RSINE1 SINE B4 0 165 8 9 1565 219 154 26 0 chr1 128550150 128550189 -68645243 + GA-rich Low_complexity Low_complexity 1 40 0 9 1565 207 0 0 0 chr1 128550325 128550348 -68645084 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1565 414 0 0 0 chr1 128550348 128550393 -68645039 + (GA)n Simple_repeat Simple_repeat 2 47 0 9 1565 339 271 112 56 chr1 128550873 128550998 -68644434 - ID_B1 SINE B4 -15 209 78 1 1565 380 158 13 0 chr1 128551074 128551150 -68644282 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1565 378 0 0 0 chr1 128551593 128551635 -68643797 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1565 358 289 135 45 chr1 128551637 128551793 -68643639 - B4 SINE B4 -23 269 100 1 1565 296 277 105 38 chr1 128551806 128551899 -68643533 - B4 SINE B4 -167 125 27 1 1565 591 15 0 0 chr1 128551899 128551967 -68643465 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1565 296 277 105 38 chr1 128551967 128551978 -68643454 - B4 SINE B4 -266 26 14 1 1565 564 226 81 47 chr1 128552027 128552199 -68643233 + B3A SINE B2 2 179 -19 1 1565 363 141 0 0 chr1 128552201 128552265 -68643167 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1565 543 295 62 19 chr1 128552638 128552849 -68642583 - ID_B1 SINE B4 -3 221 2 1 1565 878 279 116 53 chr1 128553223 128553601 -68641831 + MTD LTR MaLR 18 419 0 1 1565 352 289 16 47 chr1 128553677 128553804 -68641628 - Lx8 LINE L1 -191 7282 7160 1 1565 226 125 0 40 chr1 128554296 128554346 -68641086 + C-rich Low_complexity Low_complexity 4 51 0 1 1565 210 269 0 15 chr1 128554358 128554426 -68641006 + A-rich Low_complexity Low_complexity 6 72 0 1 1565 672 285 30 70 chr1 128554916 128555218 -68640214 + B4 SINE B4 1 290 -2 1 1565 654 311 0 0 chr1 128555479 128555640 -68639792 + RSINE1 SINE B4 3 163 -2 1 1565 250 318 0 12 chr1 128555643 128555729 -68639703 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1565 402 151 19 9 chr1 128555732 128555839 -68639593 + GA-rich Low_complexity Low_complexity 1 108 0 1 1565 766 300 44 15 chr1 128556542 128556813 -68638619 + B4 SINE B4 12 290 -2 1 1565 2393 167 161 2 chr1 128558225 128558710 -68636722 + RLTR17 LTR ERVK 131 692 0 1 1565 21 36 0 0 chr1 128559341 128559369 -68636063 + AT_rich Low_complexity Low_complexity 1 28 0 1 1565 38745 30 0 0 chr1 128560266 128566739 -68628693 - L1Md_T LINE L1 0 6585 15 1 1565 575 238 0 0 chr1 128566975 128567097 -68628335 + ID_B1 SINE B4 103 224 0 1 1565 721 281 14 19 chr1 128568175 128568382 -68627050 - B4 SINE B4 -5 287 82 1 1565 351 203 0 0 chr1 128568403 128568477 -68626955 + (TTG)n Simple_repeat Simple_repeat 2 75 0 1 1565 813 249 54 54 chr1 128569312 128569383 -68626049 + B4A SINE B4 26 95 -197 1 1565 1210 68 0 0 chr1 128569383 128569531 -68625901 + B1_Mus1 SINE Alu 1 148 0 1 1565 813 249 54 54 chr1 128569531 128569718 -68625714 + B4A SINE B4 96 284 -8 1 1565 180 300 49 16 chr1 128570422 128570483 -68624949 + MER5A DNA MER1_type 102 164 -25 1 1565 479 60 15 0 chr1 128570483 128570550 -68624882 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1565 664 252 104 42 chr1 128571455 128571695 -68623737 + B4 SINE B4 2 256 -36 1 1565 368 251 69 158 chr1 128571812 128572248 -68623184 + RMER10A LTR ERVL 18 414 -28 1 1565 227 143 0 39 chr1 128572296 128572347 -68623085 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1565 339 196 0 68 chr1 128573118 128573266 -68622166 + GA-rich Low_complexity Low_complexity 4 141 0 1 1565 261 263 220 28 chr1 128574247 128574388 -68621044 + B4A SINE B4 108 275 -17 1 1565 609 302 5 69 chr1 128574528 128574731 -68620701 + ID_B1 SINE B4 6 195 -29 1 1565 283 221 7 210 chr1 128575003 128575146 -68620286 + RMER15 LTR ERVL 1 114 -461 1 1565 748 316 62 23 chr1 128575179 128575484 -68619948 + RMER15 LTR ERVL 259 575 0 1 1565 233 200 92 0 chr1 128575641 128575706 -68619726 - Lx9 LINE L1 -130 7514 7444 1 1565 529 235 37 164 chr1 128575938 128576182 -68619250 - ID_B1 SINE B4 -7 217 5 1 1565 249 238 0 0 chr1 128576592 128576693 -68618739 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1565 603 188 0 17 chr1 128576734 128576913 -68618519 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1565 1084 255 82 7 chr1 128577303 128577572 -68617860 + B4A SINE B4 2 290 -2 1 1565 261 0 0 0 chr1 128578294 128578323 -68617109 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1565 238 297 116 8 chr1 128578783 128578912 -68616520 + MIRb SINE MIR 86 228 -40 1 1565 290 182 0 15 chr1 128578968 128578987 -68616445 + (TG)n Simple_repeat Simple_repeat 2 20 0 1 1565 893 107 7 0 chr1 128578987 128579127 -68616305 + (TA)n Simple_repeat Simple_repeat 1 141 0 1 1565 290 182 0 15 chr1 128579127 128579174 -68616258 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1565 494 221 223 16 chr1 128579443 128579627 -68615805 - B4A SINE B4 -61 231 10 1 1565 691 298 33 42 chr1 128579682 128579896 -68615536 + B3 SINE B2 5 216 0 1 1565 333 0 0 0 chr1 128579958 128579995 -68615437 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 195 442 320 101 29 chr1 128581540 128581749 -68613683 - B4 SINE B4 -2 290 67 1 1566 226 260 0 39 chr1 128582034 128582086 -68613346 + PB1D9 SINE Alu 5 54 -66 1 1566 385 276 60 8 chr1 128582085 128582202 -68613230 + B1_Mur2 SINE Alu 21 143 -6 1 1566 282 73 0 0 chr1 128582429 128582470 -68612962 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1566 387 0 0 0 chr1 128582470 128582513 -68612919 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1566 244 240 41 0 chr1 128583040 128583161 -68612271 + CT-rich Low_complexity Low_complexity 2 127 0 1 1566 966 259 40 16 chr1 128584584 128584835 -68610597 - B4 SINE B4 -32 260 4 1 1566 304 291 49 74 chr1 128585743 128585906 -68609526 - Charlie4z DNA MER1_type -8 159 1 1 1566 425 333 8 8 chr1 128585906 128585981 -68609451 + B4 SINE B4 211 285 -7 1 1566 207 345 35 0 chr1 128586162 128586249 -68609183 - L2c LINE L2 -17 3370 3281 1 1566 490 311 62 5 chr1 128586249 128586443 -68608989 + MER20 DNA MER1_type 9 213 -6 1 1566 447 222 115 31 chr1 128586543 128586672 -68608760 + ID_B1 SINE B4 37 176 -48 1 1566 1125 278 105 16 chr1 128586672 128587052 -68608380 - MTD LTR MaLR 0 419 6 1 1566 405 0 0 0 chr1 128587512 128587557 -68607875 + (TAA)n Simple_repeat Simple_repeat 1 45 0 1 1566 324 373 37 0 chr1 128587904 128588121 -68607311 + MIR SINE MIR 37 261 -1 1 1566 582 15 0 0 chr1 128588584 128588651 -68606781 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1566 610 226 89 116 chr1 128589175 128589400 -68606032 + B4 SINE B4 11 229 -63 1 1566 919 246 5 23 chr1 128589407 128589627 -68605805 + B4 SINE B4 11 226 -66 1 1566 522 311 19 0 chr1 128589628 128589789 -68605643 + RSINE1 SINE B4 2 165 0 1 1566 747 171 0 0 chr1 128590481 128590621 -68604811 + URR1B DNA MER1_type 86 225 0 1 1566 252 59 0 0 chr1 128590677 128590711 -68604721 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1566 222 208 0 0 chr1 128590791 128590839 -68604593 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1566 346 39 39 0 chr1 128591400 128591452 -68603980 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1566 339 96 0 0 chr1 128591691 128591743 -68603689 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1566 883 237 5 16 chr1 128592876 128593065 -68602367 + B3A SINE B2 1 187 -11 1 1566 453 281 95 38 chr1 128593365 128593576 -68601856 + Lx8 LINE L1 7246 7468 -5 1 1566 384 375 6 0 chr1 128594075 128594235 -68601197 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1566 409 308 15 0 chr1 128594262 128594392 -68601040 - Lx8 LINE L1 -186 7287 7156 1 1566 642 302 122 12 chr1 128594635 128594890 -68600542 + B4A SINE B4 8 290 -2 1 1566 230 225 51 92 chr1 128594938 128595036 -68600396 - L2a LINE L2 -92 3334 3241 1 1566 902 281 79 0 chr1 128595879 128596146 -68599286 + B4A SINE B4 1 288 -4 1 1566 217 241 0 18 chr1 128596159 128596214 -68599218 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1566 423 0 0 0 chr1 128596288 128596335 -68599097 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 1566 447 152 0 0 chr1 128596338 128596417 -68599015 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 1 1566 181 265 0 24 chr1 128596513 128596598 -68598834 + GA-rich Low_complexity Low_complexity 1 83 0 1 1566 208 26 49 49 chr1 128596999 128597040 -68598392 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 1566 266 217 62 52 chr1 128598072 128598169 -68597263 + RLTR25B LTR ERVK 401 498 -530 1 1566 710 41 10 0 chr1 128598112 128598209 -68597223 + B1_Mus2 SINE Alu 42 139 -8 1 1566 194 0 39 0 chr1 128598209 128598235 -68597197 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1566 242 273 61 0 chr1 128598243 128598309 -68597123 - B3A SINE B2 -128 70 1 1 1566 21 0 0 0 chr1 128598319 128598340 -68597092 + AT_rich Low_complexity Low_complexity 1 21 0 1 1566 560 272 91 54 chr1 128598777 128599057 -68596375 + B4 SINE B4 2 281 -11 1 1566 348 83 0 0 chr1 128599058 128599106 -68596326 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1566 700 278 206 17 chr1 128600033 128600747 -68594685 - L1MB8 LINE L1 -4 6174 5298 1 1566 622 254 10 72 chr1 128600750 128600958 -68594474 - B3A SINE B2 -3 195 1 1 1566 264 250 57 57 chr1 128600963 128601086 -68594346 - L1MD LINE L1 -838 5308 5186 1 1566 234 0 0 0 chr1 128601105 128601131 -68594301 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1566 633 38 0 0 chr1 128601131 128601210 -68594222 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1566 460 302 47 7 chr1 128601211 128601361 -68594071 - B3A SINE B2 -42 156 1 1 1566 906 303 98 20 chr1 128601361 128601923 -68593509 - L1MB8 LINE L1 -948 5198 4593 1 1566 301 229 0 14 chr1 128601985 128602056 -68593376 - B4 SINE B4 -221 71 2 1 1566 609 282 64 10 chr1 128603897 128604101 -68591331 - ID_B1 SINE B4 -7 217 3 1 1566 247 344 79 30 chr1 128604271 128604436 -68590996 + MTD LTR MaLR 3 175 -244 1 1566 325 295 10 10 chr1 128604501 128604597 -68590835 + MTD LTR MaLR 304 399 -20 1 1566 249 33 0 0 chr1 128605021 128605051 -68590381 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1566 455 257 9 0 chr1 128605354 128605463 -68589969 + ID_B1 SINE B4 114 223 -1 1 1566 333 0 0 0 chr1 128606020 128606057 -68589375 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1566 833 287 16 43 chr1 128606078 128606336 -68589096 - B4 SINE B4 -40 252 2 2 1566 3342 45 5 0 chr1 128606534 128606932 -68588500 + MTB LTR MaLR 1 400 0 2 1566 279 0 0 0 chr1 128607185 128607216 -68588216 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1566 195 42 0 0 chr1 128607216 128607240 -68588192 + (TATG)n Simple_repeat Simple_repeat 2 25 0 2 1566 794 252 42 14 chr1 128607308 128607525 -68587907 + ID_B1 SINE B4 2 224 0 2 1566 673 273 32 37 chr1 128607589 128607779 -68587653 - B3A SINE B2 -8 190 2 2 1566 300 220 13 0 chr1 128608127 128608206 -68587226 + ID4 SINE ID 16 94 -58 2 1566 775 293 71 84 chr1 128608591 128608997 -68586435 - MTD LTR MaLR -13 406 6 2 1566 418 290 35 28 chr1 128609000 128609142 -68586290 - ORR1E LTR MaLR -216 143 1 2 1566 618 245 19 72 chr1 128609413 128609620 -68585812 - B3A SINE B2 -2 196 1 2 1566 264 122 0 0 chr1 128609751 128609792 -68585640 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 1566 791 320 24 58 chr1 128610005 128610300 -68585132 - B4 SINE B4 -4 288 4 2 1566 404 356 0 20 chr1 128610868 128611017 -68584415 + G-rich Low_complexity Low_complexity 4 149 0 2 1566 254 270 28 24 chr1 128611021 128611278 -68584154 + GA-rich Low_complexity Low_complexity 1 258 0 2 1566 219 233 19 10 chr1 128611302 128611406 -68584026 + GA-rich Low_complexity Low_complexity 2 106 0 2 1566 453 211 36 18 chr1 128611728 128611839 -68583593 - MTD LTR MaLR -39 380 268 2 1566 308 146 18 0 chr1 128612163 128612218 -68583214 + tRNA-Ser-TCA(m) tRNA tRNA 13 68 -5 2 1566 745 298 40 16 chr1 128612302 128612554 -68582878 - MTD LTR MaLR -161 258 1 2 1566 285 208 0 0 chr1 128613078 128613131 -68582301 + Lx8 LINE L1 5854 5906 -1567 2 1566 408 266 11 11 chr1 128613394 128613489 -68581943 + B3A SINE B2 1 95 -103 2 1566 797 71 9 0 chr1 128613503 128613616 -68581816 + (CA)n Simple_repeat Simple_repeat 1 114 0 2 1566 33 25 0 0 chr1 128613616 128613656 -68581776 + AT_rich Low_complexity Low_complexity 1 40 0 2 1566 302 229 244 39 chr1 128614481 128614608 -68580824 - MLT1E1A LTR MaLR -371 309 157 2 1566 225 220 20 0 chr1 128614620 128614670 -68580762 + L1M3 LINE L1 5545 5595 -588 2 1566 471 219 0 17 chr1 128614738 128614843 -68580589 - B1_Mus1 SINE Alu -10 107 14 2 1566 950 216 168 43 chr1 128614866 128615122 -68580310 - MTC LTR MaLR -132 289 2 2 1566 293 329 105 0 chr1 128615122 128615265 -68580167 + RSINE1 SINE B4 4 161 -4 2 1566 426 311 33 7 chr1 128615297 128615449 -68579983 + L1MA4 LINE L1 5633 5788 -512 2 1566 343 230 71 43 chr1 128615514 128615655 -68579777 + L1MA4 LINE L1 5783 5927 -373 2 1566 882 259 22 62 chr1 128616264 128616560 -68578872 + B4 SINE B4 3 290 -2 2 1566 282 234 104 75 chr1 128616926 128617060 -68578372 + RMER15 LTR ERVL 46 183 -392 2 1566 451 208 32 24 chr1 128617042 128617165 -68578267 + RMER15 LTR ERVL 288 411 -164 2 1566 251 211 19 0 chr1 128617205 128617257 -68578175 + GA-rich Low_complexity Low_complexity 2 54 0 2 1566 1023 91 6 18 chr1 128617260 128617428 -68578004 + (GGAGAA)n Simple_repeat Simple_repeat 6 171 0 2 1566 1890 156 84 0 chr1 128617441 128617762 -68577670 - RMER1C Other Other -174 1168 821 2 1566 669 287 70 22 chr1 128617753 128617981 -68577451 + RMER1C Other Other 461 699 -643 2 1566 532 170 124 9 chr1 128617983 128618096 -68577336 - B4A SINE B4 -64 228 103 2 1566 414 0 0 0 chr1 128619102 128619148 -68576284 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1566 264 231 11 103 chr1 128619375 128619462 -68575970 + RSINE1 SINE B4 87 165 0 2 1566 697 242 20 40 chr1 128619719 128619921 -68575511 - B3A SINE B2 0 198 1 2 1566 210 71 0 0 chr1 128620139 128620167 -68575265 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1566 480 195 0 0 chr1 128620262 128620349 -68575083 + B4 SINE B4 1 87 -205 2 1566 25 31 0 0 chr1 128620358 128620390 -68575042 + AT_rich Low_complexity Low_complexity 1 32 0 2 1566 593 241 36 0 chr1 128620421 128620558 -68574874 + B1_Mur1 SINE Alu 1 142 -7 2 1566 408 357 0 0 chr1 128620613 128620742 -68574690 + B4 SINE B4 104 232 -60 2 1566 222 91 0 0 chr1 128620743 128620776 -68574656 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1566 245 333 0 22 chr1 128620973 128621062 -68574370 + MIR SINE MIR 106 192 -70 2 1566 498 108 0 0 chr1 128621321 128621395 -68574037 + (T)n Simple_repeat Simple_repeat 1 74 0 2 1566 180 0 0 0 chr1 128621593 128621613 -68573819 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 2 1566 1287 45 0 22 chr1 128621613 128621795 -68573637 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 2 1566 273 29 0 0 chr1 128621893 128621927 -68573505 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1566 417 42 56 0 chr1 128623847 128623918 -68571514 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 2 1566 1158 61 0 7 chr1 128623918 128624055 -68571377 - B1_Mus2 SINE Alu -10 137 1 2 1566 22 0 0 0 chr1 128624091 128624113 -68571319 + AT_rich Low_complexity Low_complexity 1 22 0 2 1566 983 256 1 30 chr1 128624373 128624671 -68570761 - Lx7 LINE L1 -184 5972 5617 2 1566 430 308 7 15 chr1 128624817 128624952 -68570480 + RSINE1 SINE B4 1 134 -31 2 1566 434 234 0 50 chr1 128625003 128625102 -68570330 + B3A SINE B2 67 160 -38 2 1566 182 163 0 39 chr1 128625102 128625153 -68570279 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 2 1566 631 273 109 52 chr1 128625224 128625491 -68569941 + MER2 DNA MER2_type 58 339 -6 2 1566 561 55 0 0 chr1 128625848 128625921 -68569511 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 2 1566 228 67 0 0 chr1 128626324 128626354 -68569078 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1566 674 288 31 23 chr1 128626389 128626645 -68568787 - B4A SINE B4 -33 259 2 2 1566 920 274 5 5 chr1 128627347 128627563 -68567869 + ID_B1 SINE B4 9 224 0 2 1566 186 82 39 39 chr1 128627573 128627624 -68567808 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1566 308 77 19 0 chr1 128627804 128627856 -68567576 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 2 1566 694 263 33 28 chr1 128628011 128628222 -68567210 + ID_B1 SINE B4 5 216 -8 2 1566 243 259 119 4 chr1 128628698 128628806 -68566626 + MIRb SINE MIR 24 136 -132 2 1566 656 289 5 46 chr1 128629124 128629320 -68566112 - B3A SINE B2 0 198 11 2 1566 443 225 5 43 chr1 128630192 128630378 -68565054 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 2 1566 255 300 10 20 chr1 128630398 128630500 -68564932 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1566 283 286 171 0 chr1 128630521 128630626 -68564806 - B4A SINE B4 -21 271 149 2 1566 284 304 32 11 chr1 128630657 128630750 -68564682 - B4A SINE B4 -197 95 1 2 1566 3689 53 2 0 chr1 128631246 128631698 -68563734 + L1Md_F2 LINE L1 6118 6570 -12 2 1566 705 284 105 31 chr1 128631773 128631833 -68563599 - B4 SINE B4 -14 278 222 2 1566 234 0 0 0 chr1 128631833 128631859 -68563573 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1566 198 71 0 0 chr1 128631863 128631891 -68563541 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1566 705 284 105 31 chr1 128631891 128632083 -68563349 - B4 SINE B4 -71 221 8 2 1566 681 281 70 0 chr1 128632820 128633019 -68562413 + ID_B1 SINE B4 1 213 -11 2 1566 193 175 0 66 chr1 128633870 128633931 -68561501 + A-rich Low_complexity Low_complexity 5 61 0 2 1566 243 0 0 0 chr1 128633940 128633967 -68561465 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1566 208 91 45 0 chr1 128634452 128634496 -68560936 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 2 1566 212 0 36 0 chr1 128635311 128635339 -68560093 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 2 1566 291 28 0 0 chr1 128635706 128635742 -68559690 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1566 736 260 31 10 chr1 128636506 128636700 -68558732 + ID_B1 SINE B4 2 199 -25 2 1566 570 298 12 24 chr1 128637199 128637364 -68558068 + RSINE1 SINE B4 3 165 0 2 1566 267 114 0 0 chr1 128637402 128637446 -68557986 + (CAAT)n Simple_repeat Simple_repeat 1 44 0 2 1566 409 351 27 76 chr1 128637560 128637785 -68557647 + B4A SINE B4 3 216 -76 2 1566 636 70 0 0 chr1 128638512 128638598 -68556834 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 2 1566 190 176 39 0 chr1 128638636 128638687 -68556745 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1566 712 224 0 39 chr1 128638725 128638878 -68556554 - B1_Mur1 SINE Alu -1 148 2 2 1566 460 231 43 216 chr1 128638892 128639240 -68556192 - B4A SINE B4 -4 288 1 2 1566 336 238 0 0 chr1 128642626 128642794 -68552638 + (CA)n Simple_repeat Simple_repeat 1 168 0 2 1566 219 225 0 0 chr1 128642823 128642901 -68552531 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1566 1060 91 0 24 chr1 128642901 128643070 -68552362 + (TATATG)n Simple_repeat Simple_repeat 3 167 0 2 1566 219 225 0 0 chr1 128643070 128643080 -68552352 + (CA)n Simple_repeat Simple_repeat 2 11 0 2 1566 436 165 41 0 chr1 128643230 128643400 -68552032 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2 1566 213 81 54 0 chr1 128643400 128643437 -68551995 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 2 1566 656 306 79 37 chr1 128644034 128644275 -68551157 + B4 SINE B4 1 251 -41 2 1566 384 22 0 0 chr1 128644341 128644386 -68551046 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1566 861 10 0 0 chr1 128644859 128644957 -68550475 + (GGGGA)n Simple_repeat Simple_repeat 5 102 0 2 1566 246 206 0 0 chr1 128645340 128645408 -68550024 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1566 610 275 41 0 chr1 128645409 128645580 -68549852 - B3A SINE B2 -18 180 3 2 1566 562 212 14 42 chr1 128645949 128646092 -68549340 - MTD LTR MaLR -175 244 106 2 1566 432 37 0 0 chr1 128646170 128646224 -68549208 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1566 1778 223 37 15 chr1 128646754 128646773 -68548659 + MTD LTR MaLR 1 18 -401 2 1566 216 0 0 0 chr1 128646773 128646797 -68548635 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2 1566 1778 223 37 15 chr1 128646797 128647187 -68548245 + MTD LTR MaLR 19 419 0 2 1566 638 264 34 0 chr1 128647187 128647365 -68548067 + ID_B1 SINE B4 37 220 -4 3 1566 1145 261 25 3 chr1 128648376 128648660 -68546772 + B4A SINE B4 2 291 -1 3 1566 474 49 0 0 chr1 128648783 128648844 -68546588 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1566 414 0 0 0 chr1 128649929 128649975 -68545457 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1566 782 263 51 74 chr1 128649979 128650275 -68545157 - B4 SINE B4 -3 289 1 3 1566 253 208 202 28 chr1 128650327 128650436 -68544996 + MER5A DNA MER1_type 3 130 -59 3 1566 330 26 0 0 chr1 128650445 128650484 -68544948 + (CACCC)n Simple_repeat Simple_repeat 2 40 0 3 1566 186 71 0 0 chr1 128650969 128650997 -68544435 + (ATG)n Simple_repeat Simple_repeat 3 30 0 3 1566 273 29 0 0 chr1 128650997 128651031 -68544401 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1566 366 129 0 0 chr1 128651031 128651093 -68544339 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1566 211 239 58 66 chr1 128651199 128651320 -68544112 - MIRb SINE MIR -99 169 50 3 1566 1068 70 0 0 chr1 128652073 128652215 -68543217 + (GA)n Simple_repeat Simple_repeat 1 142 0 3 1566 289 215 15 0 chr1 128652358 128652423 -68543009 + MIR SINE MIR 13 78 -184 3 1566 885 190 0 0 chr1 128653117 128653296 -68542136 + CT-rich Low_complexity Low_complexity 2 180 0 3 1566 353 337 103 37 chr1 128653406 128653578 -68541854 - L2 LINE L2 -891 2528 2340 3 1566 894 19 0 0 chr1 128653578 128653682 -68541750 + (GA)n Simple_repeat Simple_repeat 2 105 0 3 1566 353 337 103 37 chr1 128653682 128653780 -68541652 - L2 LINE L2 -1080 2339 2241 3 1566 1939 154 96 19 chr1 128654027 128654392 -68541040 + ORR1B1 LTR MaLR 1 393 -1 3 1566 391 300 36 20 chr1 128654436 128654621 -68540811 - B4A SINE B4 -102 190 2 3 1566 23 0 0 0 chr1 128654621 128654644 -68540788 + AT_rich Low_complexity Low_complexity 1 23 0 3 1566 846 154 7 34 chr1 128655329 128655477 -68539955 - B1_Mur3 SINE Alu 0 149 6 3 1566 328 283 30 98 chr1 128655369 128655502 -68539930 - MT2B LTR ERVL -337 264 141 3 1566 407 269 0 0 chr1 128656716 128656809 -68538623 - B4A SINE B4 -16 276 184 3 1566 600 14 0 0 chr1 128656935 128657004 -68538428 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1566 650 297 12 11 chr1 128657410 128657847 -68537585 + CT-rich Low_complexity Low_complexity 1 437 0 3 1566 1156 267 32 3 chr1 128658016 128658332 -68537100 - MER58B DNA MER1_type -16 325 1 3 1566 538 151 19 0 chr1 128659157 128659263 -68536169 + GA-rich Low_complexity Low_complexity 1 108 0 3 1566 564 316 68 82 chr1 128659907 128660017 -68535415 - B4 SINE B4 0 292 204 3 1566 443 18 0 18 chr1 128660017 128660074 -68535358 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 3 1566 564 316 68 82 chr1 128660074 128660256 -68535176 - B4 SINE B4 -89 203 4 3 1566 452 306 91 33 chr1 128661138 128661381 -68534051 + B4 SINE B4 16 272 -20 3 1566 351 0 0 0 chr1 128663120 128663159 -68532273 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1566 648 294 73 59 chr1 128663186 128663472 -68531960 + B4 SINE B4 3 292 0 3 1566 351 78 0 0 chr1 128663861 128663912 -68531520 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 1566 181 146 20 20 chr1 128663912 128663961 -68531471 + CT-rich Low_complexity Low_complexity 5 53 0 3 1566 27894 25 0 0 chr1 128664079 128670480 -68524952 - L1Md_T LINE L1 0 6585 88 3 1566 1261 251 55 39 chr1 128670744 128671108 -68524324 + ORR1D2 LTR MaLR 1 370 0 3 1566 646 305 115 15 chr1 128671562 128671822 -68523610 - B4A SINE B4 -4 288 3 3 1566 425 251 300 14 chr1 128672131 128672341 -68523091 + B4A SINE B4 2 271 -21 3 1566 537 16 0 0 chr1 128672396 128672458 -68522974 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1566 267 104 0 0 chr1 128673329 128673377 -68522055 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 1566 387 0 0 0 chr1 128673527 128673570 -68521862 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1566 595 276 79 18 chr1 128673591 128673820 -68521612 - B4 SINE B4 0 292 50 3 1566 2791 194 90 57 chr1 128673868 128674515 -68520917 - RMER1B Other Other 0 1066 399 3 1566 295 320 0 0 chr1 128675148 128675226 -68520206 + B4A SINE B4 6 83 -209 3 1566 1377 70 0 0 chr1 128675234 128675638 -68519794 + (CA)n Simple_repeat Simple_repeat 1 404 0 3 1566 374 305 91 101 chr1 128676331 128676550 -68518882 + B4A SINE B4 1 217 -75 3 1566 302 329 6 6 chr1 128677610 128677772 -68517660 + (TG)n Simple_repeat Simple_repeat 1 162 0 3 1566 232 311 15 15 chr1 128677720 128677857 -68517575 + (TATG)n Simple_repeat Simple_repeat 4 140 0 3 1566 630 143 0 0 chr1 128678273 128678378 -68517054 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 1566 689 168 8 0 chr1 128678378 128678503 -68516929 + B3 SINE B2 79 204 -12 3 1566 5859 43 15 0 chr1 128678659 128679381 -68516051 + L1Md_F3 LINE L1 5850 6582 -2 3 1566 28 0 0 0 chr1 128679479 128679507 -68515925 + AT_rich Low_complexity Low_complexity 1 28 0 3 1566 4005 64 10 11 chr1 128679565 128680088 -68515344 + L1Md_F2 LINE L1 6061 6582 0 3 1566 570 310 186 12 chr1 128680474 128680722 -68514710 + B4 SINE B4 2 292 0 3 1566 509 66 44 0 chr1 128680732 128680823 -68514609 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1566 577 292 12 6 chr1 128681044 128681206 -68514226 - RSINE1 SINE B4 0 165 3 3 1566 2144 143 3 3 chr1 128681381 128681731 -68513701 - L1_Mur2 LINE L1 -1334 4543 4194 3 1566 7231 80 24 3 chr1 128681719 128682664 -68512768 + L1_Mus4 LINE L1 5655 6621 -15 3 1566 834 11 0 0 chr1 128682664 128682759 -68512673 + (GAA)n Simple_repeat Simple_repeat 2 96 0 3 1566 7231 80 24 3 chr1 128682759 128682775 -68512657 + L1_Mus4 LINE L1 6622 6636 0 3 1566 841 291 11 19 chr1 128683019 128683285 -68512147 + B4A SINE B4 2 265 -27 3 1566 378 206 56 0 chr1 128683928 128684088 -68511344 + (CTATT)n Simple_repeat Simple_repeat 5 173 0 3 1566 193 204 53 26 chr1 128684190 128684341 -68511091 + (CTATT)n Simple_repeat Simple_repeat 3 157 0 3 1566 524 302 0 24 chr1 128685615 128685781 -68509651 + RSINE1 SINE B4 2 163 -2 3 1566 349 281 89 126 chr1 128685953 128686154 -68509278 + L1MC5 LINE L1 6640 6834 -1127 3 1566 577 240 102 38 chr1 128686154 128686340 -68509092 + B3A SINE B2 1 198 0 3 1566 349 281 89 126 chr1 128686340 128686700 -68508732 + L1MC5 LINE L1 6835 7180 -781 3 1566 387 189 194 44 chr1 128686760 128686920 -68508512 - Lx9 LINE L1 -42 7602 7419 3 1566 960 171 30 65 chr1 128686924 128687155 -68508277 - Lx9 LINE L1 -136 7508 7286 3 1566 318 349 23 15 chr1 128687166 128687297 -68508135 + MLT1A0 LTR MaLR 71 202 -163 3 1566 1669 273 56 33 chr1 128687345 128687867 -68507565 + Lx8 LINE L1 6809 7342 -131 3 1566 36160 36 0 0 chr1 128688782 128693915 -68501517 + L1Md_T LINE L1 360 5589 -297 3 1566 9051 9 0 2 chr1 128693915 128694913 -68500519 + L1Md_T LINE L1 5590 6585 0 3 1566 24 53 0 0 chr1 128694918 128694956 -68500476 + AT_rich Low_complexity Low_complexity 1 38 0 3 1566 24 0 0 0 chr1 128695024 128695048 -68500384 + AT_rich Low_complexity Low_complexity 1 24 0 3 1566 606 325 0 0 chr1 128695133 128695293 -68500139 - RSINE1 SINE B4 -2 163 4 3 1566 369 0 0 0 chr1 128696214 128696255 -68499177 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1566 605 251 0 138 chr1 128696733 128696922 -68498510 + RSINE1 SINE B4 3 165 0 3 1566 816 236 6 0 chr1 128697239 128697400 -68498032 - RSINE1 SINE B4 -2 163 2 3 1566 1432 200 35 19 chr1 128698961 128699272 -68496160 - Lx5 LINE L1 0 7050 6735 3 1566 552 264 118 38 chr1 128700146 128700496 -68494936 + MLT2B4 LTR ERVL 5 371 -43 3 1566 249 113 56 14 chr1 128700511 128700583 -68494849 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 1566 29 0 0 0 chr1 128701373 128701402 -68494030 + AT_rich Low_complexity Low_complexity 1 29 0 3 1566 22 0 0 0 chr1 128701964 128701986 -68493446 + AT_rich Low_complexity Low_complexity 1 22 0 3 1566 216 0 0 0 chr1 128702090 128702114 -68493318 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 1566 218 122 24 0 chr1 128702143 128702184 -68493248 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 3 1566 336 313 75 0 chr1 128702280 128702414 -68493018 + RSINE1 SINE B4 3 146 -19 3 1566 300 118 53 0 chr1 128702427 128702503 -68492929 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3 1566 254 296 54 27 chr1 128702521 128702632 -68492800 + L1M3 LINE L1 5595 5708 -460 3 1566 572 337 6 6 chr1 128702799 128702966 -68492466 + B3A SINE B2 1 167 -31 3 1566 417 39 0 0 chr1 128703032 128703083 -68492349 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1566 400 235 0 0 chr1 128704136 128704217 -68491215 + B4 SINE B4 3 83 -209 3 1566 274 147 118 0 chr1 128704217 128704285 -68491147 + Lx5 LINE L1 6975 7050 0 3 1566 290 229 96 0 chr1 128704300 128704383 -68491049 + B4A SINE B4 83 173 -119 3 1566 234 253 0 0 chr1 128704423 128704506 -68490926 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1566 675 244 0 3 chr1 128704521 128704875 -68490557 + (CA)n Simple_repeat Simple_repeat 1 352 0 3 1566 551 196 11 34 chr1 128704860 128705039 -68490393 + (CATA)n Simple_repeat Simple_repeat 4 178 0 3 1566 465 206 45 45 chr1 128705703 128705815 -68489617 + PB1D7 SINE Alu 2 113 -7 3 1566 452 296 11 95 chr1 128705835 128706025 -68489407 + B4A SINE B4 38 211 -81 3 1566 418 319 62 0 chr1 128706742 128706902 -68488530 - RMER15 LTR ERVL 0 575 406 3 1566 245 395 16 25 chr1 128707774 128707896 -68487536 + Lx8 LINE L1 7111 7231 -242 3 1566 239 288 12 24 chr1 128707945 128708027 -68487405 + RMER15 LTR ERVL 425 505 -70 3 1566 222 91 0 0 chr1 128708181 128708214 -68487218 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1566 664 240 129 93 chr1 128708235 128708515 -68486917 - B4A SINE B4 0 292 3 3 1566 525 80 0 0 chr1 128708660 128708735 -68486697 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1566 685 279 73 23 chr1 128708844 128709064 -68486368 + B4A SINE B4 44 274 -18 3 1566 3762 181 24 16 chr1 128709063 128709536 -68485896 + ORR1B1-int LTR MaLR 742 1216 -293 4 1566 216 0 0 0 chr1 128709536 128709560 -68485872 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 4 1566 3762 181 24 16 chr1 128709560 128709660 -68485772 + ORR1B1-int LTR MaLR 1217 1323 -186 4 1566 1034 40 8 0 chr1 128709660 128709784 -68485648 - B1_Mus1 SINE Alu -19 129 5 4 1566 3762 181 24 16 chr1 128709784 128709971 -68485461 + ORR1B1-int LTR MaLR 1324 1508 -1 4 1566 1633 165 135 3 chr1 128709971 128710312 -68485120 + ORR1B1 LTR MaLR 1 386 -8 4 1566 2127 182 5 19 chr1 128710316 128710747 -68484685 + ORR1B1-int LTR MaLR 1 425 -1084 4 1566 708 214 126 6 chr1 128710730 128710913 -68484519 + MTB_Mm LTR MaLR 195 399 -8 4 1566 269 180 15 45 chr1 128711030 128711164 -68484268 + (CAGAGA)n Simple_repeat Simple_repeat 2 131 0 4 1566 859 298 64 43 chr1 128711176 128711691 -68483741 + MT2A LTR ERVL 6 531 -2 4 1566 568 288 52 0 chr1 128712245 128712398 -68483034 + ID_B1 SINE B4 64 224 0 4 1567 1097 253 69 56 chr1 128712950 128713310 -68482122 - MTEa LTR MaLR 0 379 15 4 1567 737 255 48 10 chr1 128713349 128713555 -68481877 + B3 SINE B2 3 216 0 4 1567 361 295 111 35 chr1 128715454 128715474 -68479958 - RSINE1 SINE B4 -6 159 141 4 1567 426 39 0 0 chr1 128715474 128715526 -68479906 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1567 361 295 111 35 chr1 128715526 128715649 -68479783 - RSINE1 SINE B4 -25 140 5 4 1567 441 299 11 38 chr1 128716046 128716230 -68479202 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 4 1567 698 277 140 4 chr1 128716722 128716979 -68478453 + B4 SINE B4 1 292 0 4 1567 239 250 0 0 chr1 128716993 128717041 -68478391 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1567 1139 55 0 14 chr1 128717287 128717435 -68477997 - B1_Mus2 SINE Alu 0 147 2 4 1567 21 0 0 0 chr1 128717446 128717467 -68477965 + AT_rich Low_complexity Low_complexity 1 21 0 4 1567 282 125 0 0 chr1 128717710 128717758 -68477674 + (CCCCCT)n Simple_repeat Simple_repeat 5 52 0 4 1567 1072 261 19 4 chr1 128717877 128718146 -68477286 - B4 SINE B4 -18 274 2 4 1567 251 197 75 15 chr1 128718446 128718513 -68476919 + MIRc SINE MIR 150 220 -48 4 1567 487 315 64 64 chr1 128719626 128720002 -68475430 + Lx8 LINE L1 7097 7472 -1 4 1567 264 59 0 0 chr1 128720192 128720226 -68475206 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 1567 282 75 0 0 chr1 128720273 128720313 -68475119 - PB1D10 SINE Alu -3 114 75 4 1567 214 269 12 49 chr1 128720582 128720664 -68474768 + GA-rich Low_complexity Low_complexity 2 80 0 4 1567 183 129 0 0 chr1 128720664 128720695 -68474737 + (GGA)n Simple_repeat Simple_repeat 1 31 0 4 1567 566 168 0 43 chr1 128720710 128720897 -68474535 + GA-rich Low_complexity Low_complexity 2 180 0 4 1567 467 298 11 27 chr1 128720942 128721125 -68474307 + GA-rich Low_complexity Low_complexity 1 180 0 4 1567 563 247 111 46 chr1 128721681 128721834 -68473598 + RSINE1 SINE B4 3 165 0 4 1567 284 263 0 26 chr1 128721919 128721997 -68473435 + (TATG)n Simple_repeat Simple_repeat 2 77 0 4 1567 943 257 10 74 chr1 128721998 128722309 -68473123 - B4 SINE B4 0 292 2 4 1567 317 241 0 12 chr1 128722569 128722649 -68472783 + B4 SINE B4 3 81 -211 4 1567 281 135 0 19 chr1 128722649 128722702 -68472730 + CT-rich Low_complexity Low_complexity 3 54 0 4 1567 1012 102 0 0 chr1 128722720 128722857 -68472575 - B1_Mus1 SINE Alu -10 138 2 4 1567 1123 232 60 58 chr1 128722867 128723214 -68472218 - ORR1E LTR MaLR -11 348 1 4 1567 401 277 119 52 chr1 128723214 128723395 -68472037 + B4 SINE B4 75 257 -35 4 1567 204 254 0 0 chr1 128723467 128723526 -68471906 + GA-rich Low_complexity Low_complexity 1 59 0 4 1567 583 282 13 19 chr1 128723715 128723874 -68471558 - MER58A DNA MER1_type -66 158 1 4 1567 961 262 38 19 chr1 128724091 128724352 -68471080 + Lx8 LINE L1 6905 7170 -303 4 1567 333 0 0 0 chr1 128724394 128724431 -68471001 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1567 360 178 0 0 chr1 128724431 128724504 -68470928 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1567 240 364 9 27 chr1 128724513 128724623 -68470809 + Lx8 LINE L1 7237 7344 -129 4 1567 774 206 80 61 chr1 128724630 128724842 -68470590 + B3 SINE B2 1 216 0 4 1567 735 131 90 55 chr1 128724866 128725011 -68470421 + B1_Mur4 SINE Alu 1 150 0 4 1567 21 57 0 0 chr1 128725113 128725148 -68470284 + AT_rich Low_complexity Low_complexity 1 35 0 4 1567 888 118 0 0 chr1 128726322 128726458 -68468974 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 1567 366 297 33 17 chr1 128727996 128728116 -68467316 + B4A SINE B4 9 130 -162 4 1567 208 261 0 0 chr1 128728202 128728248 -68467184 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 4 1567 495 240 72 0 chr1 128728941 128729066 -68466366 - RSINE1 SINE B4 -29 136 3 4 1567 221 299 15 0 chr1 128729867 128729934 -68465498 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1567 587 233 14 50 chr1 128730016 128730154 -68465278 - B4A SINE B4 -2 290 158 4 1567 544 254 0 0 chr1 128730154 128730280 -68465152 + ORR1D2 LTR MaLR 1 126 -244 4 1567 271 191 57 9 chr1 128730749 128730855 -68464577 + GA-rich Low_complexity Low_complexity 5 115 0 4 1567 411 193 143 27 chr1 128731654 128731766 -68463666 - MTD LTR MaLR -13 406 282 4 1567 312 98 216 0 chr1 128731768 128731819 -68463613 + ERVL-E-int LTR ERVL 4391 4452 -1215 4 1567 2122 182 43 0 chr1 128731848 128732200 -68463232 + RMER1B Other Other 432 798 -268 4 1567 274 291 51 8 chr1 128732777 128732895 -68462537 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 4 1567 861 277 72 15 chr1 128732956 128733220 -68462212 - B4 SINE B4 -2 290 12 4 1567 1726 209 23 55 chr1 128733433 128733869 -68461563 - Lx7 LINE L1 -390 7306 6885 4 1567 756 258 112 49 chr1 128733873 128734097 -68461335 + B4 SINE B4 55 292 0 4 1567 209 83 28 0 chr1 128734530 128734566 -68460866 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 4 1567 435 173 233 16 chr1 128734651 128734780 -68460652 - B3A SINE B2 -38 160 4 4 1567 186 118 0 0 chr1 128734960 128734994 -68460438 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 1567 405 54 0 0 chr1 128735595 128735651 -68459781 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1567 441 129 52 0 chr1 128735638 128735754 -68459678 + CT-rich Low_complexity Low_complexity 1 122 0 4 1567 236 251 66 10 chr1 128735799 128735888 -68459544 - B4 SINE B4 -16 276 218 4 1567 325 242 35 0 chr1 128735996 128736105 -68459327 - B4A SINE B4 -171 121 3 4 1567 1168 260 24 100 chr1 128736528 128736938 -68458494 - MTE2a LTR MaLR 0 379 1 4 1567 435 92 0 0 chr1 128737490 128737555 -68457877 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1567 350 303 57 0 chr1 128737560 128737682 -68457750 - RSINE1 SINE B4 -34 131 3 4 1567 768 304 4 34 chr1 128737682 128737916 -68457516 - B4 SINE B4 -63 229 3 4 1567 538 290 5 119 chr1 128738311 128738530 -68456902 - B3A SINE B2 0 198 5 4 1567 627 233 61 12 chr1 128738764 128738929 -68456503 + B4 SINE B4 34 206 -86 4 1567 295 288 0 0 chr1 128739009 128739075 -68456357 + B4 SINE B4 227 292 0 4 1567 1754 268 24 16 chr1 128739209 128739702 -68455730 + Lx8 LINE L1 6733 7229 -244 4 1567 423 0 0 0 chr1 128739702 128739749 -68455683 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 4 1567 225 0 0 0 chr1 128739765 128739790 -68455642 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 1567 29 0 0 0 chr1 128739985 128740014 -68455418 + AT_rich Low_complexity Low_complexity 1 29 0 4 1567 2708 149 113 113 chr1 128741255 128741866 -68453566 - RMER19C LTR ERVK 0 611 1 4 1567 477 319 19 6 chr1 128741981 128742139 -68453293 - RSINE1 SINE B4 -3 162 3 4 1567 35 54 0 0 chr1 128742330 128742386 -68453046 + AT_rich Low_complexity Low_complexity 1 56 0 4 1567 563 260 47 47 chr1 128742391 128742581 -68452851 + MTE2a LTR MaLR 185 374 -5 4 1567 826 233 82 140 chr1 128742809 128743188 -68452244 - ORR1E LTR MaLR -2 357 1 4 1567 429 280 25 19 chr1 128743394 128743554 -68451878 + MLT1I LTR MaLR 3 163 -248 4 1567 385 272 0 0 chr1 128743917 128744009 -68451423 + Lx8 LINE L1 6565 6656 -817 4 1567 5318 129 21 0 chr1 128744581 128745386 -68450046 - Lx4A LINE L1 -3 7055 6234 4 1567 1061 274 37 37 chr1 128745399 128745774 -68449658 + MTEa LTR MaLR 1 375 -4 4 1567 239 361 14 0 chr1 128746435 128746507 -68448925 + ID4_ SINE ID 1 73 -10 4 1567 591 216 0 0 chr1 128746684 128746800 -68448632 + RSINE1 SINE B4 7 122 -43 4 1567 597 28 0 0 chr1 128746800 128746871 -68448561 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1567 898 281 69 23 chr1 128747058 128747320 -68448112 + B4 SINE B4 1 274 -18 4 1567 471 18 0 0 chr1 128747325 128747381 -68448051 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1567 1111 225 99 25 chr1 128748337 128748651 -68446781 - MTEa LTR MaLR -42 337 1 4 1567 279 0 0 0 chr1 128748882 128748913 -68446519 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1567 282 56 0 0 chr1 128748947 128748983 -68446449 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1567 677 297 48 48 chr1 128750450 128750740 -68444692 + B4A SINE B4 1 290 -2 4 1567 231 36 0 0 chr1 128751058 128751086 -68444346 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4 1567 476 298 6 53 chr1 128751414 128751584 -68443848 + RSINE1 SINE B4 4 165 0 4 1567 759 225 118 85 chr1 128752551 128752823 -68442609 - B4A SINE B4 0 292 12 4 1567 343 307 11 0 chr1 128753632 128753720 -68441712 - RSINE1 SINE B4 -2 163 75 4 1567 21 0 0 0 chr1 128754306 128754327 -68441105 + AT_rich Low_complexity Low_complexity 1 21 0 4 1567 229 329 147 35 chr1 128754969 128755139 -68440293 - MTEa LTR MaLR -129 250 62 4 1567 231 61 0 0 chr1 128755386 128755419 -68440013 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1567 198 0 0 0 chr1 128755419 128755441 -68439991 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1567 540 0 0 0 chr1 128755441 128755500 -68439932 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1567 557 312 90 26 chr1 128755557 128755583 -68439849 - B4A SINE B4 -6 286 261 4 1567 1394 99 16 5 chr1 128755583 128755776 -68439656 + B2_Mm2 SINE B2 1 195 0 5 1567 557 312 90 26 chr1 128755776 128756016 -68439416 - B4A SINE B4 -32 260 3 4 1567 1052 267 63 4 chr1 128756664 128756935 -68438497 - B4 SINE B4 -3 289 3 5 1567 381 303 7 50 chr1 128757027 128757166 -68438266 + polypurine Low_complexity Low_complexity 3 135 0 5 1567 645 243 12 53 chr1 128757998 128758193 -68437239 + B3A SINE B2 29 215 -1 5 1567 219 225 222 12 chr1 128759317 128759398 -68436034 - MIRc SINE MIR -109 159 62 5 1567 432 0 0 0 chr1 128759744 128759792 -68435640 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1567 716 323 73 11 chr1 128759824 128760084 -68435348 - B4 SINE B4 -12 280 5 5 1567 1148 245 56 0 chr1 128760815 128761023 -68434409 + B4 SINE B4 5 217 -75 5 1567 414 0 0 0 chr1 128761023 128761069 -68434363 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 1567 1148 245 56 0 chr1 128761069 128761129 -68434303 + B4 SINE B4 218 286 -6 5 1567 226 234 0 0 chr1 128761132 128761179 -68434253 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1567 468 139 0 0 chr1 128761370 128761449 -68433983 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 5 1567 642 309 49 31 chr1 128761638 128761925 -68433507 + B4A SINE B4 1 292 0 5 1567 776 57 0 9 chr1 128761948 128762055 -68433377 + (TCTCC)n Simple_repeat Simple_repeat 2 107 0 5 1567 1161 182 23 5 chr1 128763028 128763249 -68432183 - URR1B DNA MER1_type 0 225 1 5 1567 715 305 89 8 chr1 128763249 128763497 -68431935 + B4A SINE B4 16 283 -9 5 1567 253 351 0 0 chr1 128763611 128763688 -68431744 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 1567 767 214 5 63 chr1 128763850 128764040 -68431392 - B3A SINE B2 -16 182 4 5 1567 700 11 22 0 chr1 128764354 128764443 -68430989 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1567 329 289 49 7 chr1 128765398 128765541 -68429891 - RMER15 LTR ERVL -22 553 405 5 1567 327 301 42 0 chr1 128766142 128766285 -68429147 + RMER15 LTR ERVL 405 553 -22 5 1567 340 205 128 0 chr1 128766303 128766381 -68429051 - ORR1E LTR MaLR -138 221 134 5 1567 273 29 0 0 chr1 128767268 128767302 -68428130 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1567 547 285 92 29 chr1 128767849 128768055 -68427377 + B4A SINE B4 68 286 -6 5 1567 266 268 0 14 chr1 128768062 128768134 -68427298 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1567 261 0 0 0 chr1 128768255 128768284 -68427148 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1567 333 0 0 0 chr1 128768284 128768320 -68427112 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1567 795 318 21 35 chr1 128768327 128768611 -68426821 - B4A SINE B4 -12 280 1 5 1567 280 358 46 36 chr1 128768971 128769165 -68426267 - MLT1J LTR MaLR -94 418 223 5 1567 239 30 0 0 chr1 128769165 128769198 -68426234 - MTEb LTR MaLR -3 376 344 5 1567 212 158 0 0 chr1 128769198 128769236 -68426196 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1567 516 16 0 0 chr1 128769236 128769297 -68426135 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1567 348 278 135 0 chr1 128769511 128769637 -68425795 - MLT2B2 LTR ERVL -10 552 410 5 1567 862 248 78 155 chr1 128769700 128770065 -68425367 + MTE2a LTR MaLR 16 355 -24 5 1567 2490 163 24 7 chr1 128770065 128770414 -68425018 - MTC LTR MaLR 0 421 75 5 1567 486 0 0 0 chr1 128770414 128770468 -68424964 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1567 2490 163 24 7 chr1 128770468 128770532 -68424900 - MTC LTR MaLR -347 74 1 5 1567 862 248 78 155 chr1 128770532 128770553 -68424879 + MTE2a LTR MaLR 356 372 -7 5 1567 727 309 72 4 chr1 128770563 128770839 -68424593 - MLT2B2 LTR ERVL -217 298 4 5 1567 977 240 150 32 chr1 128771790 128772130 -68423302 - MTD LTR MaLR 0 419 40 5 1567 295 308 9 18 chr1 128772277 128772386 -68423046 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 5 1567 207 0 0 0 chr1 128772664 128772687 -68422745 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1567 729 0 0 0 chr1 128772772 128772853 -68422579 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5 1567 304 303 124 7 chr1 128772900 128773073 -68422359 - MTEb LTR MaLR -15 364 150 5 1567 581 247 81 43 chr1 128773443 128773457 -68421975 - B3A SINE B2 -17 181 168 5 1567 582 15 0 0 chr1 128773457 128773524 -68421908 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1567 581 247 81 43 chr1 128773524 128773670 -68421762 - B3A SINE B2 -31 167 15 5 1567 505 298 120 51 chr1 128774492 128774708 -68420724 + B4A SINE B4 35 265 -27 5 1567 378 0 0 0 chr1 128774719 128774761 -68420671 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1567 1472 284 44 12 chr1 128775163 128775594 -68419838 + Lx8 LINE L1 6886 7330 -143 5 1567 848 256 48 22 chr1 128776154 128776382 -68419050 - B4A SINE B4 0 292 59 5 1567 527 302 68 34 chr1 128776468 128776679 -68418753 - B3A SINE B2 -3 213 1 5 1567 617 310 77 7 chr1 128776849 128777135 -68418297 - MER2 DNA MER2_type -38 307 2 5 1567 339 363 54 0 chr1 128777136 128777304 -68418128 - MLT2D LTR ERVL -41 373 197 5 1567 743 309 56 53 chr1 128777393 128777749 -68417683 - MTD LTR MaLR -62 357 1 5 1567 333 349 0 36 chr1 128779328 128779438 -68415994 + RSINE1 SINE B4 41 146 -19 5 1567 35049 67 2 29 chr1 128779475 128785653 -68409779 - L1Md_F2 LINE L1 0 6582 607 5 1567 815 245 18 50 chr1 128786021 128786240 -68409192 + B3 SINE B2 4 215 -1 5 1567 528 338 25 13 chr1 128786259 128786496 -68408936 + Lx7 LINE L1 7096 7335 -361 5 1567 243 256 164 51 chr1 128786512 128786689 -68408743 + Lx6 LINE L1 7254 7450 -10 5 1567 210 239 14 95 chr1 128786716 128786790 -68408642 + ID4_ SINE ID 3 70 -13 5 1567 568 182 16 32 chr1 128786866 128786991 -68408441 - RMER19C LTR ERVK 0 611 489 5 1567 922 127 0 39 chr1 128786986 128787192 -68408240 - RMER19C LTR ERVK -347 264 1 5 1567 1035 270 10 33 chr1 128787313 128787612 -68407820 + B4A SINE B4 1 292 0 5 1567 735 12 0 0 chr1 128788098 128788182 -68407250 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1567 264 30 0 0 chr1 128788182 128788215 -68407217 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1567 264 245 0 0 chr1 128788220 128788269 -68407163 - B4A SINE B4 -20 272 224 5 1567 203 88 29 0 chr1 128788276 128788310 -68407122 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1567 610 273 91 19 chr1 128788323 128788532 -68406900 - B4A SINE B4 -68 224 1 5 1567 1120 249 19 90 chr1 128788901 128789334 -68406098 - MTE2a LTR MaLR -14 405 1 5 1567 1472 216 49 11 chr1 128789556 128789903 -68405529 - MTEb LTR MaLR -5 374 15 5 1567 3024 130 32 14 chr1 128789998 128790490 -68404942 - Lx4A LINE L1 0 7058 6558 5 1567 189 0 0 0 chr1 128791037 128791058 -68404374 + (TTG)n Simple_repeat Simple_repeat 2 22 0 5 1567 251 191 25 25 chr1 128791393 128791511 -68403921 + (TTCA)n Simple_repeat Simple_repeat 2 119 0 5 1567 180 322 21 72 chr1 128791517 128791614 -68403818 - L2b LINE L2 -6 3369 3278 5 1567 216 0 0 0 chr1 128791863 128791887 -68403545 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1567 778 303 7 37 chr1 128791954 128792252 -68403180 - B4 SINE B4 -2 290 2 5 1567 228 359 0 13 chr1 128792323 128792402 -68403030 - MER5A1 DNA MER1_type -23 143 66 5 1567 440 35 17 0 chr1 128792779 128792837 -68402595 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 1567 810 298 94 0 chr1 128792840 128793095 -68402337 - B4A SINE B4 -13 279 1 5 1567 209 353 17 34 chr1 128794871 128795050 -68400382 + (CATA)n Simple_repeat Simple_repeat 4 179 0 5 1567 538 231 76 15 chr1 128795680 128795812 -68399620 - B1F2 SINE Alu 0 149 10 5 1567 1151 216 28 89 chr1 128795933 128796361 -68399071 + MTE2a LTR MaLR 3 405 -14 5 1567 414 325 59 28 chr1 128796493 128796851 -68398581 + L1M5 LINE L1 5397 5765 -359 5 1567 327 280 141 23 chr1 128796986 128797114 -68398318 + MTEa LTR MaLR 8 150 -229 5 1567 207 300 12 12 chr1 128797613 128797694 -68397738 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 5 1567 226 340 34 14 chr1 128797665 128797811 -68397621 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 5 1567 249 304 43 36 chr1 128798197 128798337 -68397095 + MIR SINE MIR 30 170 -92 5 1567 985 235 51 102 chr1 128798434 128798827 -68396605 + MTE2a LTR MaLR 1 373 -6 5 1567 682 310 109 41 chr1 128799100 128799307 -68396125 - MLT1A0 LTR MaLR 0 365 140 5 1567 1594 210 56 3 chr1 128799307 128799665 -68395767 + MTEb LTR MaLR 3 379 0 5 1567 682 310 109 41 chr1 128799665 128799797 -68395635 - MLT1A0 LTR MaLR -226 139 4 5 1567 207 0 0 0 chr1 128799878 128799901 -68395531 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 1567 279 21 41 20 chr1 128799902 128799951 -68395481 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1567 908 66 0 0 chr1 128799951 128800072 -68395360 - B1_Mus1 SINE Alu -10 138 18 5 1567 333 283 81 16 chr1 128800049 128800231 -68395201 + ID_B1 SINE B4 28 224 0 5 1567 926 234 0 34 chr1 128800314 128800518 -68394914 - B3 SINE B2 -19 197 1 5 1567 600 14 0 0 chr1 128801420 128801489 -68393943 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1567 261 0 0 0 chr1 128801783 128801812 -68393620 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1567 192 77 0 0 chr1 128801864 128801890 -68393542 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1567 318 182 19 44 chr1 128802182 128802300 -68393132 + ORR1E LTR MaLR 1 114 -264 5 1567 366 322 56 77 chr1 128803239 128803525 -68391907 - RLTR25A LTR ERVK -789 314 35 5 1567 1001 240 27 101 chr1 128803553 128803891 -68391541 + ORR1E LTR MaLR 41 353 -6 5 1567 376 241 2 27 chr1 128804128 128804219 -68391213 - B4A SINE B4 -74 91 2 5 1567 205 191 0 0 chr1 128804294 128804336 -68391096 + T-rich Low_complexity Low_complexity 1 42 0 5 1567 1163 68 0 0 chr1 128804338 128804486 -68390946 - B1_Mus1 SINE Alu 0 148 1 5 1567 546 275 100 99 chr1 128804487 128805174 -68390258 - L1MC5 LINE L1 -438 7523 6836 5 1567 753 289 55 55 chr1 128805330 128805641 -68389791 + Lx7 LINE L1 7022 7332 -364 5 1567 489 229 28 39 chr1 128805662 128805844 -68389588 + Lx7 LINE L1 7509 7688 -8 5 1567 23 54 0 0 chr1 128805846 128805883 -68389549 + AT_rich Low_complexity Low_complexity 1 37 0 5 1567 393 265 29 0 chr1 128805935 128806037 -68389395 - MTE2b LTR MaLR -274 105 1 5 1567 1856 52 0 8 chr1 128806174 128806409 -68389023 + L1_Mus1 LINE L1 6334 6566 -1 6 1567 742 182 6 6 chr1 128806474 128806634 -68388798 + GA-rich Low_complexity Low_complexity 2 161 0 6 1567 644 272 191 21 chr1 128806760 128807076 -68388356 + MTD LTR MaLR 15 407 -12 6 1567 411 21 0 0 chr1 128807374 128807422 -68388010 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1567 646 291 16 0 chr1 128807425 128807607 -68387825 - B4 SINE B4 -106 186 2 6 1567 355 352 85 0 chr1 128807608 128807807 -68387625 - MER58A DNA MER1_type -4 220 5 6 1567 473 265 160 37 chr1 128808733 128808921 -68386511 - B3 SINE B2 0 216 6 6 1567 791 322 82 36 chr1 128809497 128809970 -68385462 + Lx8 LINE L1 6864 7358 -115 6 1567 828 124 20 40 chr1 128810038 128810189 -68385243 + ORR1B1 LTR MaLR 41 188 -206 6 1567 297 75 0 0 chr1 128810297 128810337 -68385095 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 6 1567 186 297 0 30 chr1 128810892 128810958 -68384474 + MER5A DNA MER1_type 63 126 -63 6 1567 235 208 75 0 chr1 128812401 128812454 -68382978 + RMER30 DNA MER1_type 8 64 -138 6 1567 367 268 14 109 chr1 128812467 128812605 -68382827 + B2_Mm2 SINE B2 2 126 -69 6 1567 267 284 0 24 chr1 128812687 128812770 -68382662 + RMER30 DNA MER1_type 111 191 -11 6 1567 282 299 0 0 chr1 128812841 128812918 -68382514 - B1_Mur1 SINE Alu -38 111 35 6 1567 685 298 109 19 chr1 128813806 128814004 -68381428 + B4A SINE B4 3 215 -77 6 1567 279 0 0 0 chr1 128814004 128814035 -68381397 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 1567 685 298 109 19 chr1 128814035 128814093 -68381339 + B4A SINE B4 216 282 -10 6 1567 261 275 0 24 chr1 128814105 128814187 -68381245 + (CATA)n Simple_repeat Simple_repeat 3 82 0 6 1567 290 136 0 0 chr1 128815484 128815528 -68379904 - L1MC5 LINE L1 -1176 6785 6742 6 1567 695 253 116 114 chr1 128815848 128816209 -68379223 + MTE2a LTR MaLR 1 362 -17 6 1567 346 284 115 93 chr1 128816380 128817204 -68378228 + L1MC5 LINE L1 6655 7496 -465 6 1567 248 243 13 26 chr1 128817413 128817489 -68377943 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 6 1567 246 105 0 0 chr1 128817644 128817682 -68377750 + (ATATG)n Simple_repeat Simple_repeat 3 40 0 6 1567 1064 261 166 81 chr1 128817712 128818242 -68377190 + RMER15 LTR ERVL 1 575 0 6 1567 303 140 0 0 chr1 128818492 128818542 -68376890 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1567 401 313 16 0 chr1 128819576 128819848 -68375584 + GA-rich Low_complexity Low_complexity 1 276 0 6 1567 252 224 0 0 chr1 128819979 128820037 -68375395 + G-rich Low_complexity Low_complexity 1 58 0 6 1567 1005 60 0 0 chr1 128820049 128820183 -68375249 + B1_Mus1 SINE Alu 6 139 -9 6 1567 202 352 66 59 chr1 128820533 128820669 -68374763 - MIRb SINE MIR -128 140 4 6 1567 228 291 151 26 chr1 128820677 128820829 -68374603 - MIRb SINE MIR -97 171 1 6 1567 428 296 8 8 chr1 128820929 128821055 -68374377 + RSINE1 SINE B4 38 163 -2 6 1567 591 290 98 110 chr1 128821130 128821548 -68373884 + Lx8 LINE L1 7061 7473 0 6 1567 791 278 61 27 chr1 128822745 128823007 -68372425 - B4 SINE B4 -21 271 1 6 1567 539 291 20 116 chr1 128824051 128824354 -68371078 - MT2A LTR ERVL -198 335 62 6 1567 312 341 44 44 chr1 128824269 128824404 -68371028 - MTE2b LTR MaLR -239 140 6 6 1567 414 0 0 0 chr1 128824568 128824614 -68370818 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6 1567 742 252 20 25 chr1 128824624 128824827 -68370605 - B3 SINE B2 -9 207 6 6 1567 441 239 150 85 chr1 128825409 128825669 -68369763 + B4A SINE B4 2 278 -14 6 1567 483 167 0 0 chr1 128825708 128825798 -68369634 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1567 908 311 46 9 chr1 128826045 128826370 -68369062 + MTE2b LTR MaLR 1 337 -42 6 1567 213 108 0 0 chr1 128826702 128826739 -68368693 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1567 606 298 0 0 chr1 128826748 128826889 -68368543 - B3A SINE B2 -36 162 22 6 1567 448 253 31 88 chr1 128827772 128827932 -68367500 - RSINE1 SINE B4 -13 152 2 6 1567 29 0 0 0 chr1 128828100 128828129 -68367303 + AT_rich Low_complexity Low_complexity 1 29 0 6 1567 198 0 0 0 chr1 128828219 128828241 -68367191 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1567 207 0 0 0 chr1 128828241 128828264 -68367168 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1567 903 289 86 22 chr1 128828691 128828960 -68366472 + B4 SINE B4 3 288 -4 6 1567 1165 96 11 0 chr1 128828989 128829167 -68366265 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1567 1396 258 30 89 chr1 128830860 128831387 -68364045 + Lx8 LINE L1 6976 7471 -2 6 1567 313 346 19 0 chr1 128831445 128831549 -68363883 + RSINE1 SINE B4 58 163 -2 6 1567 740 69 10 0 chr1 128831549 128831650 -68363782 + L1_Mus2 LINE L1 6228 6329 -237 6 1567 252 0 0 0 chr1 128831687 128831715 -68363717 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 6 1567 956 150 38 57 chr1 128831715 128831927 -68363505 + ORR1C2 LTR MaLR 177 384 0 6 1567 667 266 57 0 chr1 128832305 128832463 -68362969 - B3A SINE B2 -31 167 1 6 1567 666 302 49 12 chr1 128832576 128832821 -68362611 + MER2 DNA MER2_type 84 337 -8 6 1567 398 314 103 66 chr1 128832911 128832943 -68362489 + B4 SINE B4 1 45 -247 6 1567 2116 229 41 80 chr1 128832943 128833579 -68361853 - RMER19C LTR ERVK 0 611 1 6 1567 398 314 103 66 chr1 128833579 128833788 -68361644 + B4 SINE B4 46 250 -42 6 1567 477 248 0 0 chr1 128834578 128834679 -68360753 - RSINE1 SINE B4 -62 103 3 6 1567 450 0 0 0 chr1 128834881 128834931 -68360501 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1567 1360 209 103 18 chr1 128835100 128835441 -68359991 - ORR1D1 LTR MaLR 0 374 5 6 1567 2260 89 54 17 chr1 128835748 128836102 -68359330 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1567 7795 79 104 51 chr1 128836102 128837342 -68358090 + IAPEz-int LTR ERVK 8 1313 -5168 6 1567 29266 22 3 1 chr1 128837340 128840601 -68354831 + IAPEz-int LTR ERVK 3209 6478 -3 6 1567 2260 89 54 17 chr1 128840605 128840959 -68354473 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1567 216 0 0 0 chr1 128841441 128841465 -68353967 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1567 23 0 0 0 chr1 128841484 128841507 -68353925 + AT_rich Low_complexity Low_complexity 1 23 0 6 1567 456 19 0 0 chr1 128841605 128841658 -68353774 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 6 1567 208 287 82 18 chr1 128842311 128842421 -68353011 - MIR3 SINE MIR -49 159 43 6 1567 371 285 49 0 chr1 128843060 128843182 -68352250 - MER70A LTR ERVL 0 472 345 6 1567 440 271 85 7 chr1 128843182 128843323 -68352109 + B4 SINE B4 1 152 -140 6 1567 363 374 97 27 chr1 128843421 128843552 -68351880 - MER70A LTR ERVL -220 358 218 6 195 988 238 125 38 chr1 128843552 128843897 -68351535 + MTEb LTR MaLR 5 379 0 6 1568 363 374 97 27 chr1 128843897 128844023 -68351409 - MER70A LTR ERVL -361 217 83 6 1568 240 35 0 0 chr1 128844194 128844223 -68351209 + (TTATA)n Simple_repeat Simple_repeat 5 33 0 6 1568 24 96 0 0 chr1 128844223 128844296 -68351136 + AT_rich Low_complexity Low_complexity 1 73 0 6 1568 656 258 21 53 chr1 128844504 128844692 -68350740 + B3A SINE B2 1 182 -16 6 1568 26 93 0 0 chr1 128844815 128844890 -68350542 + AT_rich Low_complexity Low_complexity 1 75 0 6 1568 561 30 0 0 chr1 128845846 128845913 -68349519 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1568 1527 263 94 24 chr1 128845992 128846564 -68348868 - Lx6 LINE L1 -1 7459 6483 6 1568 401 181 171 0 chr1 128846562 128846667 -68348765 - Lx6 LINE L1 -1188 6272 6150 6 1568 420 275 120 0 chr1 128846721 128846863 -68348569 - B3 SINE B2 -7 209 51 6 1568 280 275 184 0 chr1 128846860 128846969 -68348463 - B4A SINE B4 -51 241 113 6 1568 1535 216 127 0 chr1 128846975 128847336 -68348096 - MTD LTR MaLR -12 407 1 6 1568 415 336 0 8 chr1 128847336 128847455 -68347977 - B4 SINE B4 -173 119 2 6 1568 605 312 171 29 chr1 128847702 128848228 -68347204 - L1MC3 LINE L1 -8 7777 7177 6 1568 546 301 25 41 chr1 128848327 128848524 -68346908 - B3A SINE B2 -3 195 2 6 1568 694 286 28 5 chr1 128848525 128848743 -68346689 - B4A SINE B4 -62 230 8 6 1568 528 281 131 38 chr1 128848745 128849089 -68346343 - L1MC3 LINE L1 -615 7170 6795 6 1568 994 232 266 23 chr1 128849159 128849592 -68345840 + RMER15 LTR ERVL 38 575 0 6 1568 355 222 0 47 chr1 128849593 128849678 -68345754 - L1MC3 LINE L1 -1175 6820 6740 6 1568 833 239 117 5 chr1 128849678 128849890 -68345542 + B4 SINE B4 1 236 -56 6 1568 1231 224 39 61 chr1 128849890 128850252 -68345180 + ORR1E LTR MaLR 1 354 -5 6 1568 191 114 29 0 chr1 128850316 128850351 -68345081 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1568 387 0 0 0 chr1 128850822 128850865 -68344567 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1568 187 234 125 21 chr1 128851422 128851518 -68343914 + MIRb SINE MIR 44 149 -119 6 1568 1113 277 28 11 chr1 128851722 128851791 -68343641 - B4 SINE B4 -2 290 214 6 1568 216 0 0 0 chr1 128851791 128851815 -68343617 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 6 1568 1113 277 28 11 chr1 128851815 128852030 -68343402 - B4 SINE B4 -79 213 1 6 1568 180 179 0 0 chr1 128852055 128852094 -68343338 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 6 1568 626 268 8 0 chr1 128852098 128852225 -68343207 - RSINE1 SINE B4 -8 157 30 6 1568 227 247 156 0 chr1 128853091 128853168 -68342264 - B4 SINE B4 -11 281 193 6 1568 2297 78 0 0 chr1 128853434 128853753 -68341679 + ORR1A2 LTR MaLR 1 319 -8 6 1568 465 90 0 0 chr1 128853917 128853984 -68341448 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1568 409 273 129 7 chr1 128854827 128854967 -68340465 - B4A SINE B4 -23 269 113 6 1568 583 200 38 0 chr1 128855751 128855856 -68339576 + RSINE1 SINE B4 3 111 -54 6 1568 196 254 145 29 chr1 128855973 128856042 -68339390 - L2b LINE L2 -6 3369 3293 6 1568 1689 119 140 10 chr1 128856054 128856368 -68339064 - ORR1B2 LTR MaLR -10 357 3 6 1568 706 261 33 11 chr1 128856450 128856632 -68338800 + ID_B1 SINE B4 1 186 -38 6 1568 1029 142 6 6 chr1 128856838 128857008 -68338424 + B2_Mm1t SINE B2 2 171 -22 6 1568 302 113 257 40 chr1 128857064 128857165 -68338267 + B2_Mm2 SINE B2 48 170 -25 6 1568 17647 204 41 59 chr1 128857179 128859690 -68335742 - Lx6 LINE L1 -28 7432 5008 6 1568 624 252 21 0 chr1 128859690 128859833 -68335599 - B1_Mus2 SINE Alu -1 146 1 7 1568 17647 173 56 38 chr1 128859833 128863262 -68332170 - Lx6 LINE L1 -873 5007 946 6 1568 4722 78 10 0 chr1 128863262 128863881 -68331551 - L1Md_F2 LINE L1 -1 6581 5957 7 1568 1638 222 54 135 chr1 128863881 128864275 -68331157 - Lx6 LINE L1 -6783 945 572 6 1568 337 184 109 9 chr1 128864672 128864782 -68330650 - Lx7 LINE L1 -138 7558 7438 7 1568 2609 45 3 0 chr1 128864782 128865119 -68330313 + ORR1A1 LTR MaLR 1 338 -8 7 1568 670 262 0 6 chr1 128865119 128865280 -68330152 - Lx6 LINE L1 -277 7183 7024 7 1568 548 185 0 0 chr1 128865413 128865505 -68329927 - B1_Mur2 SINE Alu -45 104 13 7 1568 414 0 0 0 chr1 128866019 128866065 -68329367 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1568 275 310 0 65 chr1 128866728 128866835 -68328597 + MTEa LTR MaLR 22 121 -258 7 1568 4336 56 0 11 chr1 128866888 128867430 -68328002 + L1Md_F2 LINE L1 6047 6582 0 7 1568 351 0 0 0 chr1 128867493 128867532 -68327900 + (CTG)n Simple_repeat Simple_repeat 1 39 0 7 1568 301 311 128 8 chr1 128867532 128867665 -68327767 + MT2A LTR ERVL 313 461 -72 7 1568 1280 273 3 26 chr1 128867701 128868040 -68327392 - Lx8 LINE L1 -334 7139 6809 7 1568 1541 135 48 119 chr1 128868087 128868441 -68326991 - ORR1A4 LTR MaLR 0 329 1 7 1568 181 308 0 0 chr1 128869524 128869576 -68325856 + MIRc SINE MIR 101 152 -116 7 1568 1449 244 40 24 chr1 128871117 128871487 -68323945 - MTEa LTR MaLR -2 377 2 7 1568 550 272 86 11 chr1 128871579 128871754 -68323678 + B3A SINE B2 10 197 -1 7 1568 181 300 67 48 chr1 128871777 128871882 -68323550 + MIR SINE MIR 19 125 -137 7 1568 668 245 45 6 chr1 128872019 128872175 -68323257 + RSINE1 SINE B4 3 164 -1 7 1568 904 245 26 109 chr1 128872434 128872745 -68322687 + MTE2a LTR MaLR 1 285 -94 7 1568 813 338 63 5 chr1 128872817 128873195 -68322237 + MER89 LTR ERV1 154 553 -6 7 1568 716 226 234 23 chr1 128873990 128874293 -68321139 + MTD LTR MaLR 29 395 -24 7 1568 220 357 71 0 chr1 128874502 128874600 -68320832 + B4A SINE B4 41 145 -147 7 1568 21 0 0 0 chr1 128874660 128874681 -68320751 + AT_rich Low_complexity Low_complexity 1 21 0 7 1568 387 0 0 0 chr1 128874877 128874920 -68320512 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1568 315 71 0 0 chr1 128874920 128874962 -68320470 + (GGA)n Simple_repeat Simple_repeat 3 44 0 7 1568 792 0 0 0 chr1 128874962 128875050 -68320382 + (GGAA)n Simple_repeat Simple_repeat 4 91 0 7 1568 671 285 84 29 chr1 128875282 128875557 -68319875 + Lx8 LINE L1 7174 7463 -10 7 1568 7226 36 7 2 chr1 128875558 128876414 -68319018 + L1Md_F2 LINE L1 5722 6581 -1 7 1568 25 0 0 0 chr1 128876421 128876446 -68318986 + AT_rich Low_complexity Low_complexity 1 25 0 7 1568 2230 30 40 7 chr1 128876706 128877006 -68318426 + IAPLTR2b LTR ERVK 1 310 -17 7 1568 389 144 29 49 chr1 128877020 128877127 -68318305 + IAPEz-int LTR ERVK 1 120 -6361 7 1568 240 224 0 33 chr1 128877487 128877547 -68317885 - MLT1A1 LTR MaLR 0 408 351 7 1568 304 293 0 35 chr1 128877559 128877644 -68317788 + B4 SINE B4 1 82 -210 7 1568 323 236 13 53 chr1 128877648 128877724 -68317708 + B4 SINE B4 217 289 -3 7 1568 202 315 0 27 chr1 128877726 128877801 -68317631 + (CATA)n Simple_repeat Simple_repeat 2 74 0 7 1568 716 241 240 18 chr1 128878089 128878418 -68317014 + MTD LTR MaLR 5 406 -13 7 1568 378 0 0 0 chr1 128878437 128878479 -68316953 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1568 1734 222 22 70 chr1 128878625 128879114 -68316318 - RMER19C LTR ERVK -4 607 142 7 1568 800 262 70 46 chr1 128879834 128880118 -68315314 + B4A SINE B4 2 292 0 7 1568 207 262 0 0 chr1 128880828 128880870 -68314562 + (CATG)n Simple_repeat Simple_repeat 3 44 0 7 1568 525 16 0 0 chr1 128880923 128880985 -68314447 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1568 810 257 24 5 chr1 128881625 128881832 -68313600 + ID_B1 SINE B4 4 214 -10 7 1568 256 254 98 33 chr1 128883628 128883750 -68311682 + MT2A LTR ERVL 1 130 -403 7 1568 586 250 34 7 chr1 128883642 128883791 -68311641 + MTE2b LTR MaLR 22 174 -205 7 1568 362 272 12 0 chr1 128884439 128884520 -68310912 - ID4 SINE ID 0 83 2 7 1568 255 270 119 10 chr1 128885311 128885412 -68310020 + Lx8 LINE L1 7352 7463 -10 7 1568 495 250 234 18 chr1 128885570 128885741 -68309691 + B3 SINE B2 5 212 -4 7 1568 29 70 0 0 chr1 128885761 128885818 -68309614 + AT_rich Low_complexity Low_complexity 1 57 0 7 1568 216 0 0 0 chr1 128885916 128885940 -68309492 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 7 1568 2717 124 19 0 chr1 128885941 128886351 -68309081 - Lx2 LINE L1 -4 6993 6576 7 1568 560 267 10 60 chr1 128887237 128887436 -68307996 - ID_B1 SINE B4 -8 216 28 7 1568 670 251 117 10 chr1 128887776 128887981 -68307451 + B4A SINE B4 66 292 0 7 1568 279 239 54 43 chr1 128887993 128888085 -68307347 - MER74A LTR ERVL -435 123 31 7 1568 246 250 23 23 chr1 128890450 128890536 -68304896 + RMER12 LTR ERVK 746 831 -491 7 1568 392 308 55 80 chr1 128890562 128890879 -68304553 - B4 SINE B4 -18 274 3 7 1568 3196 181 59 89 chr1 128891702 128892085 -68303347 + RLTR40 LTR ERVK 1 351 -466 7 1568 8743 27 0 0 chr1 128892085 128893081 -68302351 + L1Md_T LINE L1 5587 6582 0 7 1568 3196 181 59 89 chr1 128893081 128893539 -68301893 + RLTR40 LTR ERVK 352 817 0 7 1568 29 0 0 0 chr1 128893756 128893785 -68301647 + AT_rich Low_complexity Low_complexity 1 29 0 7 1568 236 304 63 28 chr1 128893856 128893998 -68301434 + B2_Mm2 SINE B2 3 149 -46 7 1568 654 218 43 38 chr1 128894038 128894224 -68301208 - RMER13B LTR ERVK -8 900 714 7 1568 933 182 43 17 chr1 128894221 128894529 -68300903 - RMER17B LTR ERVK -722 236 1 7 1568 430 269 43 49 chr1 128895555 128895719 -68299713 + RMER30 DNA MER1_type 2 164 -38 7 1568 498 238 130 35 chr1 128896100 128896290 -68299142 - B3A SINE B2 -1 215 1 7 1568 813 159 7 7 chr1 128896833 128896985 -68298447 - RLTR11A LTR ERVK -3 525 374 7 1568 1028 45 0 0 chr1 128896982 128897114 -68298318 - B1_Mm SINE Alu -9 138 7 7 1568 320 340 34 14 chr1 128897185 128897331 -68298101 - B1F SINE Alu 0 149 1 7 1568 740 269 45 11 chr1 128897686 128897863 -68297569 + B3A SINE B2 8 190 -8 7 1568 230 277 67 67 chr1 128898878 128898920 -68296512 + MER5A DNA MER1_type 98 140 -49 7 1568 345 24 0 0 chr1 128898920 128898962 -68296470 + (TTG)n Simple_repeat Simple_repeat 2 43 0 7 1568 230 277 67 67 chr1 128898962 128899008 -68296424 + MER5A DNA MER1_type 141 186 -3 7 1568 180 0 0 0 chr1 128899711 128899731 -68295701 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 7 1568 303 28 0 0 chr1 128899874 128899910 -68295522 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 7 1568 248 266 32 0 chr1 128901024 128901118 -68294314 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 7 1568 402 296 24 30 chr1 128901435 128901599 -68293833 - RLTR42-int LTR ERVK -4129 1393 1231 7 1568 566 307 42 35 chr1 128901740 128902027 -68293405 + B4A SINE B4 2 290 -2 7 1568 968 313 79 12 chr1 128902840 128903244 -68292188 - RMER5 LTR ERV1 -12 522 92 7 1568 1023 268 61 9 chr1 128903594 128903902 -68291530 + ORR1D2 LTR MaLR 57 394 0 7 1568 524 56 0 14 chr1 128904595 128904668 -68290764 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 7 1568 264 257 29 0 chr1 128904668 128904738 -68290694 + G-rich Low_complexity Low_complexity 5 76 0 7 1568 681 140 11 38 chr1 128904742 128904927 -68290505 + GA-rich Low_complexity Low_complexity 1 180 0 7 1568 616 244 40 22 chr1 128905620 128905814 -68289618 + B3A SINE B2 11 216 0 7 1568 452 313 165 13 chr1 128905845 128906081 -68289351 + B4A SINE B4 1 272 -20 7 1568 288 0 0 0 chr1 128906084 128906116 -68289316 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1568 768 275 124 34 chr1 128906800 128906961 -68288471 + B4A SINE B4 2 160 -132 7 1568 2584 102 27 73 chr1 128906961 128907374 -68288058 - ORR1B1 LTR MaLR 0 394 1 7 1568 768 275 124 34 chr1 128907374 128907479 -68287953 + B4A SINE B4 161 292 0 7 1568 850 175 0 24 chr1 128907485 128907649 -68287783 - URR1B DNA MER1_type -31 194 35 7 1568 833 212 10 50 chr1 128908115 128908314 -68287118 - MTE2a LTR MaLR -17 362 172 7 1568 290 26 0 25 chr1 128908343 128908383 -68287049 + (TAA)n Simple_repeat Simple_repeat 2 40 0 7 1568 488 291 48 6 chr1 128908492 128908658 -68286774 - MLT1B LTR MaLR 0 390 218 7 1568 722 188 56 0 chr1 128908687 128908847 -68286585 - MTEb LTR MaLR -7 372 204 7 1568 576 266 36 0 chr1 128908864 128909003 -68286429 - MTEb LTR MaLR -215 144 1 7 1568 275 347 25 8 chr1 128909003 128909124 -68286308 - MLT1B LTR MaLR -228 162 40 7 1568 709 236 45 114 chr1 128909124 128909344 -68286088 + ID_B1 SINE B4 2 206 -18 7 1568 270 56 0 0 chr1 128909353 128909389 -68286043 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1568 360 0 0 0 chr1 128909389 128909428 -68286004 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1568 596 279 30 12 chr1 128910268 128910435 -68284997 + B3A SINE B2 3 172 -26 7 1568 315 0 0 0 chr1 128910444 128910479 -68284953 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1568 432 0 0 0 chr1 128911386 128911434 -68283998 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1568 344 329 119 60 chr1 128912423 128912775 -68282657 + MTD LTR MaLR 3 375 -44 7 1568 387 60 0 0 chr1 128912851 128912901 -68282531 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1568 216 67 0 0 chr1 128913178 128913208 -68282224 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1568 238 283 31 12 chr1 128913761 128913847 -68281585 - B1F1 SINE Alu -78 71 1 7 1568 318 399 23 76 chr1 128914101 128914405 -68281027 - L2b LINE L2 -24 3351 3064 7 1568 396 0 0 0 chr1 128914725 128914769 -68280663 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1568 237 250 159 0 chr1 128915614 128915702 -68279730 - RMER15 LTR ERVL -13 562 461 7 1568 261 0 0 0 chr1 128915794 128915823 -68279609 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1568 345 311 9 28 chr1 128916388 128916494 -68278938 + RSINE1 SINE B4 11 114 -51 8 1568 285 29 0 0 chr1 128916528 128916562 -68278870 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1568 183 302 32 0 chr1 128917083 128917146 -68278286 + MIRm SINE MIR 57 121 -155 8 1568 582 240 19 19 chr1 128917349 128917506 -68277926 + MTEb LTR MaLR 1 157 -222 8 1568 336 48 0 0 chr1 128917701 128917743 -68277689 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1568 357 82 0 0 chr1 128918515 128918564 -68276868 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1568 560 62 12 0 chr1 128918564 128918645 -68276787 + (TG)n Simple_repeat Simple_repeat 2 83 0 8 1568 1169 249 11 4 chr1 128918660 128918926 -68276506 - B4 SINE B4 -24 268 1 8 1568 616 300 96 44 chr1 128918953 128919337 -68276095 + Charlie4a DNA MER1_type 1 404 -104 8 1568 411 21 0 0 chr1 128919440 128919488 -68275944 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1568 310 305 9 79 chr1 128919561 128919675 -68275757 - PB1D10 SINE Alu -6 111 6 8 1568 778 248 83 119 chr1 128920123 128920425 -68275007 + B4 SINE B4 2 292 0 8 1568 3086 45 13 0 chr1 128920969 128921344 -68274088 + L1_Mus1 LINE L1 6188 6567 0 8 1568 778 45 26 18 chr1 128921352 128921466 -68273966 + (GAAAA)n Simple_repeat Simple_repeat 2 116 0 8 1568 404 300 70 35 chr1 128921499 128921727 -68273705 + B4A SINE B4 2 237 -55 8 1568 258 32 0 0 chr1 128921727 128921758 -68273674 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1568 936 0 0 0 chr1 128921758 128921861 -68273571 + (GA)n Simple_repeat Simple_repeat 2 105 0 8 1568 306 0 0 0 chr1 128922010 128922044 -68273388 + (CATTA)n Simple_repeat Simple_repeat 5 38 0 8 1568 468 35 0 0 chr1 128922093 128922151 -68273281 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1568 630 135 0 0 chr1 128922189 128922293 -68273139 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 8 1568 8517 32 1 3 chr1 128922296 128923431 -68272001 - L1Md_F2 LINE L1 0 6582 5452 8 1568 687 11 33 0 chr1 128923431 128923523 -68271909 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 8 1568 646 284 64 30 chr1 128923524 128923727 -68271705 - B4 SINE B4 -81 211 2 8 1568 396 0 0 0 chr1 128924332 128924376 -68271056 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1568 406 228 0 0 chr1 128924528 128924607 -68270825 - ID SINE ID -145 79 1 8 1568 464 245 9 9 chr1 128924607 128924713 -68270719 - RSINE1 SINE B4 -26 139 34 8 1568 622 248 31 16 chr1 128924820 128924947 -68270485 + ID_B1 SINE B4 83 211 -13 8 1568 234 0 0 0 chr1 128925244 128925270 -68270162 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1568 501 221 39 0 chr1 128925271 128925375 -68270057 - B3 SINE B2 -94 122 15 8 1568 622 241 125 45 chr1 128925373 128925573 -68269859 - B4A SINE B4 -61 231 16 8 1568 717 274 15 15 chr1 128926398 128926598 -68268834 - ID_B1 SINE B4 -17 207 8 8 1568 219 121 0 0 chr1 128926700 128926733 -68268699 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1568 277 191 36 0 chr1 128926746 128926830 -68268602 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 8 1568 461 258 7 50 chr1 128927138 128927277 -68268155 - MLT1D LTR MaLR -10 495 363 8 1568 232 281 19 46 chr1 128927320 128927428 -68268004 - MLT1E1A LTR MaLR -523 157 53 8 1568 898 221 42 18 chr1 128927536 128927753 -68267679 + ID_B1 SINE B4 1 222 -2 8 1568 267 31 0 0 chr1 128928428 128928460 -68266972 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 8 1568 475 270 197 29 chr1 128928837 128929081 -68266351 - B4A SINE B4 -1 291 7 8 1568 833 254 6 0 chr1 128929089 128929258 -68266174 - ID_B1 SINE B4 -54 170 1 8 1568 262 0 26 26 chr1 128929457 128929496 -68265936 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1568 356 319 108 6 chr1 128929554 128929721 -68265711 + Lx8 LINE L1 7040 7223 -250 8 1568 258 238 25 125 chr1 128929764 128929884 -68265548 - RMER15 LTR ERVL -92 483 376 8 1568 433 325 19 6 chr1 128930202 128930363 -68265069 + RMER15 LTR ERVL 396 558 -17 8 1568 893 293 10 50 chr1 128930849 128931151 -68264281 + B4 SINE B4 1 290 -2 8 1568 1107 255 23 140 chr1 128931807 128932235 -68263197 + MTE2a LTR MaLR 1 378 -1 8 1568 292 264 99 46 chr1 128932335 128932486 -68262946 + L1MC LINE L1 4654 4812 -1334 8 1568 501 223 0 11 chr1 128932605 128932700 -68262732 + URR1B DNA MER1_type 1 94 -131 8 1568 3046 157 22 4 chr1 128932703 128933246 -68262186 + RLTR17 LTR ERVK 140 692 0 8 1568 259 77 0 0 chr1 128933246 128933284 -68262148 + URR1B DNA MER1_type 188 225 0 8 1568 355 288 147 59 chr1 128933310 128933480 -68261952 + B4A SINE B4 40 224 -68 8 1568 758 251 31 10 chr1 128933510 128933703 -68261729 + B3A SINE B2 2 198 0 8 1568 249 221 105 0 chr1 128933888 128933974 -68261458 + L1MC LINE L1 5296 5390 -1054 8 1568 900 176 0 0 chr1 128933984 128934154 -68261278 + GA-rich Low_complexity Low_complexity 2 171 0 8 1568 351 330 58 10 chr1 128934154 128934362 -68261070 + L1MC LINE L1 5385 5602 -842 8 1568 622 230 48 70 chr1 128934378 128934565 -68260867 + ORR1E LTR MaLR 11 193 -166 8 1568 3861 45 2 2 chr1 128934914 128935410 -68260022 + RLTR1C LTR ERV1 1 496 -7 8 1568 881 246 24 28 chr1 128935712 128935925 -68259507 - B3 SINE B2 -4 212 1 8 1568 870 246 9 28 chr1 128936002 128936215 -68259217 + ID_B1 SINE B4 8 216 -8 8 1568 1601 226 12 0 chr1 128936421 128936757 -68258675 - MTEa LTR MaLR -4 375 36 8 1568 310 283 58 8 chr1 128936668 128936789 -68258643 - MT2A LTR ERVL -405 128 2 8 1568 1029 305 128 44 chr1 128936789 128937431 -68258001 - L1MC1 LINE L1 -313 6020 5325 8 1568 221 167 19 0 chr1 128937431 128937485 -68257947 + CT-rich Low_complexity Low_complexity 2 56 0 8 1568 358 257 0 0 chr1 128937499 128937569 -68257863 - ID2 SINE ID -3 80 11 8 1568 264 360 0 0 chr1 128937653 128937828 -68257604 + (CA)n Simple_repeat Simple_repeat 1 175 0 8 1568 4759 58 0 3 chr1 128938168 128938752 -68256680 + L1_Mus1 LINE L1 5985 6566 -1 8 1568 188 67 33 0 chr1 128938888 128938918 -68256514 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 1568 489 34 0 0 chr1 128939026 128939085 -68256347 + (TCC)n Simple_repeat Simple_repeat 2 60 0 8 1568 633 259 19 24 chr1 128939121 128939327 -68256105 + B3 SINE B2 11 215 -1 8 1568 732 244 224 93 chr1 128939971 128940391 -68255041 - RMER20B LTR ERVK -152 475 1 8 1568 990 326 49 23 chr1 128940419 128940808 -68254624 - MT2A LTR ERVL -71 462 64 8 1568 336 210 0 0 chr1 128940880 128940942 -68254490 - MT2A LTR ERVL -452 81 20 8 1568 291 313 111 0 chr1 128941010 128941109 -68254323 - ID_B1 SINE B4 -29 195 86 8 1568 572 334 50 69 chr1 128941106 128941424 -68254008 - Tigger7 DNA MER2_type -2062 429 118 8 1568 255 241 17 0 chr1 128941511 128941569 -68253863 - B4 SINE B4 -18 274 216 8 1568 665 236 15 57 chr1 128941578 128941794 -68253638 - B3A SINE B2 0 216 2 8 1568 1485 205 87 37 chr1 128941821 128942176 -68253256 + MTD LTR MaLR 1 373 -46 8 1568 827 265 51 0 chr1 128942193 128942310 -68253122 - B4 SINE B4 -84 208 88 8 1568 408 20 0 0 chr1 128942310 128942359 -68253073 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 8 1568 827 265 51 0 chr1 128942359 128942437 -68252995 - B4 SINE B4 -205 87 4 8 1568 660 241 27 7 chr1 128942541 128942687 -68252745 - RSINE1 SINE B4 -15 150 2 8 1568 250 339 94 0 chr1 128942688 128942815 -68252617 - L3 LINE CR1 -891 3598 3460 8 1568 687 296 31 35 chr1 128943089 128943379 -68252053 + B4A SINE B4 1 289 -3 8 1568 856 267 114 10 chr1 128943753 128944059 -68251373 - ORR1E LTR MaLR 0 359 22 8 1568 715 272 35 70 chr1 128944064 128944293 -68251139 + B4 SINE B4 48 268 -24 8 1568 483 148 0 0 chr1 128944704 128944792 -68250640 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 8 1568 801 279 32 5 chr1 128944792 128945008 -68250424 - ID_B1 SINE B4 -2 222 1 8 1568 743 188 0 0 chr1 128945804 128945937 -68249495 - RSINE1 SINE B4 -30 135 3 8 1568 678 258 19 13 chr1 128946335 128946492 -68248940 - RSINE1 SINE B4 0 165 8 8 1568 221 83 28 0 chr1 128947389 128947425 -68248007 + (GGA)n Simple_repeat Simple_repeat 3 39 0 8 1568 281 154 115 0 chr1 128947436 128947514 -68247918 + Tigger7 DNA MER2_type 2320 2406 -85 8 1568 687 230 69 41 chr1 128947537 128947755 -68247677 + L1MB7 LINE L1 5860 6083 -101 8 1568 351 0 0 0 chr1 128947764 128947803 -68247629 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1568 399 297 28 62 chr1 128947838 128948014 -68247418 - MER58A DNA MER1_type -1 223 54 8 1568 1115 250 34 21 chr1 128948439 128948823 -68246609 + Lx6 LINE L1 892 1280 -6448 8 1568 17265 175 97 93 chr1 128948816 128949128 -68246304 + Lx6 LINE L1 1207 1563 -4317 8 1568 1102 82 0 14 chr1 128949128 128949276 -68246156 + B1_Mm SINE Alu 1 146 -1 8 1568 17265 175 97 93 chr1 128949276 128949771 -68245661 + Lx6 LINE L1 1564 2074 -3806 8 1568 186 71 0 0 chr1 128949771 128949799 -68245633 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1568 17265 175 97 93 chr1 128949799 128950283 -68245149 + Lx6 LINE L1 2075 2563 -3317 8 1568 3485 61 28 0 chr1 128950283 128950707 -68244725 - RLTR10C LTR ERVK 0 436 1 8 1568 17265 175 97 93 chr1 128950707 128952295 -68243137 + Lx6 LINE L1 2564 4279 -1601 8 1568 278 26 0 25 chr1 128952295 128952335 -68243097 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1568 17265 175 97 93 chr1 128952335 128952944 -68242488 + Lx6 LINE L1 4280 5035 -845 8 1568 833 236 55 38 chr1 128952944 128953184 -68242248 - RLTR15 LTR ERVK -9 350 100 8 1568 333 0 0 0 chr1 128953184 128953221 -68242211 + (TC)n Simple_repeat Simple_repeat 2 38 0 8 1568 351 0 0 0 chr1 128953221 128953259 -68242173 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1568 833 236 55 38 chr1 128953259 128953361 -68242071 - RLTR15 LTR ERVK -260 99 2 8 1568 17265 198 98 70 chr1 128953361 128954613 -68240819 + Lx6 LINE L1 5036 6363 -687 8 1568 1737 269 55 22 chr1 128954610 128955168 -68240264 + Lx6 LINE L1 6479 7432 -28 8 1568 333 312 133 11 chr1 128955184 128955372 -68240060 + B4 SINE B4 82 292 0 8 1568 246 282 0 0 chr1 128955372 128955475 -68239957 + (CA)n Simple_repeat Simple_repeat 1 103 0 8 1568 1650 253 40 17 chr1 128955625 128956099 -68239333 + RMER5 LTR ERV1 50 534 0 8 1568 1022 274 65 35 chr1 128956236 128956640 -68238792 - MTD LTR MaLR -14 405 3 9 1568 186 43 0 0 chr1 128957583 128957606 -68237826 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1568 818 155 33 44 chr1 128957967 128958079 -68237353 - B2_Mm2 SINE B2 -5 190 11 9 1568 248 176 60 119 chr1 128958079 128958149 -68237283 - B4 SINE B4 -212 80 11 9 1568 5911 96 32 18 chr1 128958149 128959019 -68236413 + Lx LINE L1 5773 6654 0 9 1568 248 176 60 119 chr1 128959019 128959032 -68236400 - B4 SINE B4 -282 10 2 9 1568 383 339 26 9 chr1 128959808 128959924 -68235508 + RSINE1 SINE B4 2 119 -46 9 1568 215 61 30 0 chr1 128959931 128959964 -68235468 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1568 524 15 15 0 chr1 128959965 128960030 -68235402 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 1568 565 282 44 40 chr1 128960104 128960329 -68235103 + RMER15 LTR ERVL 337 562 -13 9 1568 553 256 8 0 chr1 128960432 128960553 -68234879 + RSINE1 SINE B4 3 124 -41 9 1568 333 0 0 0 chr1 128960553 128960590 -68234842 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1568 270 136 0 0 chr1 128960598 128960642 -68234790 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 1568 558 108 0 0 chr1 128960644 128960727 -68234705 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 9 1568 374 0 22 0 chr1 128961929 128961975 -68233457 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1568 869 266 148 19 chr1 128961989 128962246 -68233186 - B4A SINE B4 -1 291 2 9 1568 567 132 0 0 chr1 128962409 128962500 -68232932 + (TC)n Simple_repeat Simple_repeat 2 92 0 9 1568 1006 108 0 0 chr1 128962505 128962644 -68232788 - B1_Mus1 SINE Alu -9 139 1 9 1568 762 330 43 20 chr1 128962809 128963112 -68232320 + ERVL-E-int LTR ERVL 2269 2578 -3089 9 1568 946 214 47 0 chr1 128963495 128963687 -68231745 - B3 SINE B2 -15 201 1 9 1568 839 179 49 0 chr1 128964061 128964223 -68231209 + L1Md_F2 LINE L1 284 453 -6163 9 1568 33415 65 5 7 chr1 128964198 128968911 -68226521 + L1Md_F2 LINE L1 883 5586 -297 9 1568 8640 27 1 4 chr1 128968911 128969909 -68225523 + L1Md_F2 LINE L1 5587 6581 -1 9 1568 3889 156 51 80 chr1 128969921 128970614 -68224818 + L1_Mur2 LINE L1 55 730 -5982 9 1568 2067 135 31 0 chr1 128970614 128970932 -68224500 - ORR1A4 LTR MaLR -1 328 1 9 1568 3889 156 51 80 chr1 128970932 128971040 -68224392 + L1_Mur2 LINE L1 731 833 -5879 9 1568 457 226 19 9 chr1 128971196 128971303 -68224129 + RLTR42-int LTR ERVK 2867 2974 -2548 9 1568 1033 196 17 9 chr1 128971380 128971612 -68223820 + RLTR42-int LTR ERVK 4006 4239 -1283 9 1568 1835 228 43 74 chr1 128971860 128972415 -68223017 + RLTR42-int LTR ERVK 4254 4791 -731 9 1568 324 270 65 114 chr1 128972463 128972664 -68222768 + RMER10A LTR ERVL 18 208 -234 9 1568 185 59 0 56 chr1 128972748 128972784 -68222648 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 9 1568 186 43 0 0 chr1 128972786 128972809 -68222623 + (TATG)n Simple_repeat Simple_repeat 4 26 0 9 1568 599 196 7 0 chr1 128973881 128974019 -68221413 + (CATA)n Simple_repeat Simple_repeat 1 139 0 9 1568 304 350 0 0 chr1 128974250 128974350 -68221082 + RSINE1 SINE B4 66 165 0 9 1568 287 194 118 15 chr1 128974406 128974474 -68220958 + B4 SINE B4 214 288 -4 9 1568 369 0 0 0 chr1 128974602 128974643 -68220789 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 24 450 182 0 0 chr1 128974785 128974862 -68220570 + ID_B1 SINE B4 141 217 -7 9 1569 21 0 0 0 chr1 128974867 128974888 -68220544 + AT_rich Low_complexity Low_complexity 1 21 0 9 1569 594 71 0 0 chr1 128975038 128975122 -68220310 + (TC)n Simple_repeat Simple_repeat 2 85 0 9 1569 285 295 136 64 chr1 128975618 128975868 -68219564 - MT2A LTR ERVL -71 462 195 9 1569 263 336 18 9 chr1 128975971 128976085 -68219347 - MTE2b LTR MaLR -264 115 1 9 1569 21 36 0 0 chr1 128976135 128976163 -68219269 + AT_rich Low_complexity Low_complexity 1 28 0 9 1569 243 0 0 0 chr1 128976520 128976547 -68218885 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1569 1896 147 50 25 chr1 128976872 128977234 -68218198 - ORR1C2 LTR MaLR 0 384 14 9 1569 769 232 39 48 chr1 128977335 128977501 -68217931 - ID_B1 SINE B4 -17 207 37 9 1569 2234 97 18 59 chr1 128977501 128977842 -68217590 + ORR1A2 LTR MaLR 1 327 0 9 1569 769 232 39 48 chr1 128977842 128977883 -68217549 - ID SINE ID -188 36 2 9 1569 332 250 116 14 chr1 128978038 128978176 -68217256 - MIR SINE MIR -69 193 42 9 1569 758 182 130 48 chr1 128978287 128978495 -68216937 + B4A SINE B4 7 231 -61 9 1569 450 0 0 0 chr1 128978495 128978545 -68216887 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1569 413 19 19 0 chr1 128978545 128978598 -68216834 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1569 577 204 6 28 chr1 128978700 128978881 -68216551 + CT-rich Low_complexity Low_complexity 2 178 0 9 1569 2217 205 43 10 chr1 128979350 128979837 -68215595 + RLTR18B LTR ERVK 1 503 -9 9 1569 984 271 72 0 chr1 128980013 128980275 -68215157 + B4 SINE B4 9 289 -3 9 1569 1265 288 28 2 chr1 128980785 128981210 -68214222 - L1MA4 LINE L1 -376 5924 5489 9 1569 532 285 71 18 chr1 128981260 128981485 -68213947 - MLT1D LTR MaLR -266 239 3 9 1569 693 267 115 0 chr1 128981618 128981809 -68213623 - ID_B1 SINE B4 -7 217 5 9 1569 311 235 61 3 chr1 128981958 128982050 -68213382 - MTE2b LTR MaLR -284 95 1 9 1569 958 254 58 36 chr1 128982395 128982673 -68212759 + B4 SINE B4 5 288 -4 9 1569 1212 301 82 51 chr1 128982737 128983367 -68212065 + Lx8 LINE L1 6825 7616 -28 9 1569 249 33 0 0 chr1 128984198 128984228 -68211204 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1569 235 171 22 37 chr1 128984590 128984724 -68210708 + (TA)n Simple_repeat Simple_repeat 1 132 0 9 1569 1247 194 9 77 chr1 128984747 128985105 -68210327 - MT2A LTR ERVL -101 500 28 9 1569 1305 229 84 3 chr1 128985132 128985443 -68209989 - MTEb LTR MaLR -5 374 39 9 1569 5291 55 1 0 chr1 128985574 128986224 -68209208 - L1Md_F2 LINE L1 0 6582 5932 9 1569 3616 32 3 0 chr1 128986224 128986693 -68208739 + L1Md_F2 LINE L1 5456 5925 -657 9 1569 247 330 76 0 chr1 128986716 128986834 -68208598 + ORR1E LTR MaLR 2 128 -231 9 1569 246 256 39 0 chr1 128986836 128986914 -68208518 + CT-rich Low_complexity Low_complexity 2 82 0 9 1569 226 219 0 59 chr1 128987010 128987078 -68208354 + ORR1E LTR MaLR 278 341 -38 9 1569 461 268 50 10 chr1 128987084 128987309 -68208123 - L1MA8 LINE L1 -204 6099 5855 9 1569 50 83 0 0 chr1 128987338 128987458 -68207974 + AT_rich Low_complexity Low_complexity 1 120 0 9 1569 670 260 158 29 chr1 128987653 128988136 -68207296 - L1MA8 LINE L1 -462 5829 5265 9 1569 450 0 0 0 chr1 128988136 128988186 -68207246 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1569 398 214 122 37 chr1 128988186 128988252 -68207180 - L1MA8 LINE L1 -879 5264 5197 9 1569 402 147 0 0 chr1 128988252 128988320 -68207112 + (CCCCCT)n Simple_repeat Simple_repeat 3 70 0 9 1569 281 169 21 126 chr1 128988321 128988416 -68207016 - L1MA8 LINE L1 -973 5170 5086 9 1569 283 229 202 30 chr1 128988450 128988549 -68206883 + B1_Mus1 SINE Alu 1 116 -1 9 1569 274 222 59 13 chr1 128988562 128988672 -68206760 - L1MA8 LINE L1 -1072 5071 4955 9 1569 1018 241 42 102 chr1 128988718 128989154 -68206278 - MTD LTR MaLR -16 403 18 9 1569 1682 255 91 81 chr1 128989199 128989548 -68205884 + RMER17B LTR ERVK 3 354 -604 9 1569 753 43 0 0 chr1 128989548 128989641 -68205791 + (TCC)n Simple_repeat Simple_repeat 3 95 0 9 1569 1682 255 91 81 chr1 128989641 128990127 -68205305 + RMER17B LTR ERVK 355 846 -112 9 1569 415 257 19 0 chr1 128990132 128990237 -68205195 + MTE2a LTR MaLR 273 379 0 9 1569 1459 248 165 18 chr1 128990254 128990824 -68204608 - L1MA8 LINE L1 -1265 4878 4225 9 1569 1268 256 84 8 chr1 128990879 128991234 -68204198 - Tigger2b DNA MER2_type -71 655 274 9 1569 542 252 32 24 chr1 128991254 128991380 -68204052 - B1F2 SINE Alu -18 131 5 9 1569 714 258 68 133 chr1 128991436 128991744 -68203688 - B4A SINE B4 0 292 5 9 1569 379 244 308 5 chr1 128991748 128991933 -68203499 - Tigger2b DNA MER2_type -485 241 1 9 1569 692 269 20 15 chr1 128991984 128992180 -68203252 - B3A SINE B2 -1 197 1 9 1569 583 282 59 24 chr1 128992180 128992434 -68202998 - L1MA8 LINE L1 -1958 4185 3923 9 1569 599 298 23 28 chr1 128992686 128992900 -68202532 + MTEa LTR MaLR 1 213 -166 9 1569 1886 158 36 0 chr1 128993874 128994210 -68201222 + ORR1B1 LTR MaLR 47 394 0 9 1569 226 267 65 22 chr1 128995028 128995120 -68200312 - RMER15 LTR ERVL -207 368 273 9 1569 458 319 29 29 chr1 128996796 128996935 -68198497 + RSINE1 SINE B4 3 141 -24 9 1569 195 42 0 0 chr1 128996941 128996965 -68198467 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1569 740 153 6 0 chr1 128996970 128997140 -68198292 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 9 1569 342 115 0 0 chr1 128997156 128997208 -68198224 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 9 1569 613 246 55 22 chr1 128997634 128997817 -68197615 + B3A SINE B2 2 190 -8 9 1569 210 37 0 0 chr1 128998201 128998228 -68197204 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 9 1569 512 146 19 28 chr1 128998228 128998334 -68197098 - B1_Mur2 SINE Alu 0 149 45 9 1569 2261 137 18 5 chr1 128998352 128998733 -68196699 + ORR1B1 LTR MaLR 1 386 -8 9 1569 604 274 13 0 chr1 128998817 128998970 -68196462 - B4 SINE B4 -45 247 93 9 1569 297 51 0 0 chr1 128998988 128999027 -68196405 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1569 447 294 103 0 chr1 128999035 128999171 -68196261 - B3A SINE B2 -41 157 8 9 1569 273 312 31 20 chr1 128999170 128999268 -68196164 - B4 SINE B4 -192 100 2 9 1569 23 0 0 0 chr1 128999554 128999577 -68195855 + AT_rich Low_complexity Low_complexity 1 23 0 9 1569 870 204 6 17 chr1 128999577 128999752 -68195680 - B3A SINE B2 -22 176 4 9 1569 308 274 32 0 chr1 128999757 128999852 -68195580 + L1M4 LINE L1 3633 3730 -2416 9 1569 285 262 89 16 chr1 128999876 129000000 -68195432 - Lx6 LINE L1 -27 7433 7301 9 1569 1195 283 26 17 chr1 129000003 129000305 -68195127 - Lx5 LINE L1 -135 6915 6611 1 1569 369 278 87 71 chr1 129000444 129000696 -68194736 + L1MC4a LINE L1 5669 5924 -1958 2 1569 620 293 88 12 chr1 129000714 129000963 -68194469 + B4A SINE B4 1 268 -24 3 1569 216 97 0 0 chr1 129000975 129001006 -68194426 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1569 3319 56 2 0 chr1 129001446 129001841 -68193591 - MTA_Mm LTR MaLR 0 396 1 5 1569 357 316 0 0 chr1 129001910 129002005 -68193427 + B4 SINE B4 184 278 -14 6 1569 721 238 6 62 chr1 129002016 129002195 -68193237 + B3A SINE B2 18 186 -12 7 1569 795 214 110 14 chr1 129002708 129002916 -68192516 + B4A SINE B4 3 231 -61 8 1569 645 255 72 47 chr1 129002916 129003109 -68192323 + B3A SINE B2 1 198 0 9 1569 333 156 0 0 chr1 129003216 129003293 -68192139 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1569 706 285 0 0 chr1 129003852 129004010 -68191422 + RSINE1 SINE B4 6 163 -2 1 1569 186 71 0 0 chr1 129004015 129004043 -68191389 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1569 1028 214 37 5 chr1 129004771 129004987 -68190445 + ID_B1 SINE B4 2 224 0 1 1569 288 0 0 0 chr1 129005745 129005777 -68189655 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1569 871 292 17 55 chr1 129005835 129006125 -68189307 + B4A SINE B4 1 279 -13 1 1569 281 324 0 0 chr1 129006238 129006309 -68189123 + B4A SINE B4 2 72 -220 1 1569 218 267 17 0 chr1 129006527 129006587 -68188845 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1569 291 264 63 40 chr1 129006607 129006733 -68188699 + L1M4 LINE L1 5158 5286 -860 1 1569 360 94 0 0 chr1 129006886 129006939 -68188493 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1 1569 368 162 171 11 chr1 129007088 129007222 -68188210 + B3A SINE B2 1 158 -37 2 1569 529 351 47 31 chr1 129007332 129007755 -68187677 + L1ME2 LINE L1 5452 5881 -283 2 1569 11141 89 3 5 chr1 129007875 129010212 -68185220 + L1_Mus3 LINE L1 4299 6631 -7 2 1569 198 156 0 0 chr1 129010270 129010315 -68185117 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1569 1183 204 24 4 chr1 129010357 129010603 -68184829 + MTEa LTR MaLR 5 255 -124 2 1569 706 307 47 66 chr1 129010600 129010963 -68184469 - MTE2a LTR MaLR -23 356 1 2 1569 501 197 268 0 chr1 129011065 129011207 -68184225 - B3A SINE B2 -18 180 1 2 1569 189 147 0 0 chr1 129011223 129011257 -68184175 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1569 348 24 0 0 chr1 129011260 129011301 -68184131 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1569 270 0 0 0 chr1 129011301 129011330 -68184102 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 2 1569 768 222 7 0 chr1 129011334 129011478 -68183954 - RSINE1 SINE B4 -19 146 2 3 1569 206 301 39 10 chr1 129011758 129011862 -68183570 + MIRc SINE MIR 152 258 -10 3 1569 615 62 0 0 chr1 129011953 129012033 -68183399 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1569 432 0 0 0 chr1 129012033 129012080 -68183352 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1569 1088 244 55 78 chr1 129012927 129013549 -68181883 + RMER20B LTR ERVK 10 608 -19 3 1569 380 20 20 0 chr1 129013815 129013864 -68181568 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1569 301 203 43 14 chr1 129013954 129014024 -68181408 - B4A SINE B4 -220 72 1 3 1569 402 21 0 0 chr1 129014155 129014202 -68181230 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1569 258 32 0 0 chr1 129014313 129014344 -68181088 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1569 297 289 37 0 chr1 129014345 129014448 -68180984 - PB1D7 SINE Alu -13 107 1 3 1569 378 205 19 11 chr1 129015096 129015185 -68180247 - PB1 SINE Alu -8 109 22 4 1569 771 244 5 37 chr1 129015407 129015594 -68179838 + B3A SINE B2 3 183 -15 4 1569 915 251 76 103 chr1 129015759 129016128 -68179304 - MTE2a LTR MaLR -19 360 2 4 1569 217 109 21 21 chr1 129016140 129016187 -68179245 + CT-rich Low_complexity Low_complexity 3 49 0 4 1569 2084 157 130 11 chr1 129016616 129017061 -68178371 - RLTR16 LTR ERVK 0 505 8 4 1569 813 49 0 0 chr1 129017083 129017185 -68178247 + (TTCTCC)n Simple_repeat Simple_repeat 5 106 0 4 1569 28 0 0 0 chr1 129017231 129017259 -68178173 + AT_rich Low_complexity Low_complexity 1 28 0 4 1569 811 244 0 6 chr1 129017262 129017435 -68177997 - B3 SINE B2 -5 211 40 4 1569 1446 216 21 0 chr1 129017437 129017719 -68177713 - RMER1B Other Other -730 336 49 4 1569 243 0 0 0 chr1 129017784 129017811 -68177621 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 4 1569 794 252 66 39 chr1 129017875 129018131 -68177301 - MTE2b LTR MaLR 0 379 117 5 1569 577 210 299 133 chr1 129018554 129018878 -68176554 + MTE2a LTR MaLR 1 378 -1 5 1569 911 279 87 56 chr1 129019538 129019701 -68175731 + MTE2a LTR MaLR 44 205 -214 5 1569 1041 83 0 0 chr1 129019701 129019846 -68175586 + (GA)n Simple_repeat Simple_repeat 1 145 0 5 1569 911 252 83 51 chr1 129019846 129020047 -68175385 + MTE2a LTR MaLR 171 379 0 5 1569 887 297 18 53 chr1 129020047 129020326 -68175106 - ORR1E LTR MaLR -87 272 4 5 1569 780 236 0 0 chr1 129020445 129020589 -68174843 - RSINE1 SINE B4 0 165 22 5 1569 471 231 56 0 chr1 129020906 129021014 -68174418 + PB1D7 SINE Alu 5 118 -2 5 1569 482 277 39 92 chr1 129021112 129021270 -68174162 + B3A SINE B2 3 159 -39 5 1569 387 0 0 0 chr1 129021270 129021313 -68174119 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1569 482 277 39 92 chr1 129021313 129021361 -68174071 + B3A SINE B2 160 198 0 5 1569 432 288 87 33 chr1 129022239 129022422 -68173010 - B3A SINE B2 -5 193 1 5 1569 216 0 0 0 chr1 129022458 129022482 -68172950 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1569 225 0 0 0 chr1 129022482 129022506 -68172926 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1569 315 238 18 98 chr1 129022536 129022648 -68172784 + MT2B LTR ERVL 155 257 -344 6 1569 877 103 0 35 chr1 129022551 129022692 -68172740 + B1_Mur4 SINE Alu 9 144 -6 6 1569 282 218 171 38 chr1 129022752 129022857 -68172575 + B3A SINE B2 70 188 -10 6 1569 836 269 9 18 chr1 129023332 129023555 -68171877 + ID_B1 SINE B4 1 221 -3 6 1569 533 269 54 20 chr1 129024306 129024454 -68170978 + RSINE1 SINE B4 2 154 -11 6 1569 351 0 0 0 chr1 129024454 129024493 -68170939 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1569 240 333 0 0 chr1 129024623 129024698 -68170734 - B4A SINE B4 -207 85 11 6 1569 189 0 0 0 chr1 129025361 129025382 -68170050 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1569 342 261 153 14 chr1 129025456 129025600 -68169832 - MER58B DNA MER1_type -2 339 176 7 1569 855 230 61 77 chr1 129025601 129025898 -68169534 + B4 SINE B4 1 292 0 7 1569 300 261 11 0 chr1 129025898 129025986 -68169446 + (CA)n Simple_repeat Simple_repeat 1 89 0 7 1569 327 337 54 50 chr1 129026165 129026424 -68169008 - RLTR12B LTR ERVK -250 278 19 7 1569 228 86 0 0 chr1 129026440 129026475 -68168957 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1569 215 361 60 0 chr1 129026547 129026630 -68168802 + RSINE1 SINE B4 60 147 -18 7 1569 2939 114 36 21 chr1 129026635 129027110 -68168322 - RLTR45 LTR ERVK 0 482 1 7 1569 442 309 30 18 chr1 129027134 129027302 -68168130 + Lx8 LINE L1 7083 7252 -221 7 1569 653 241 51 112 chr1 129027489 129027704 -68167728 + B3 SINE B2 1 202 -14 7 1569 388 250 11 21 chr1 129027911 129028005 -68167427 - MER58B DNA MER1_type -248 93 1 7 1569 436 242 181 0 chr1 129028225 129028374 -68167058 - ID_B1 SINE B4 0 224 49 7 1569 492 18 0 0 chr1 129028937 129028994 -68166438 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1569 671 283 70 46 chr1 129029008 129029267 -68166165 - B4A SINE B4 -2 290 26 8 1569 434 281 41 18 chr1 129029335 129029505 -68165927 + B4 SINE B4 2 175 -117 8 1569 231 243 129 0 chr1 129029537 129029607 -68165825 + B3A SINE B2 114 192 -6 8 1569 569 310 42 85 chr1 129030268 129030331 -68165101 + B4 SINE B4 1 62 -230 8 1569 1223 74 0 0 chr1 129030331 129030494 -68164938 + L1Md_T LINE L1 6420 6582 0 8 1569 569 310 42 85 chr1 129030494 129030666 -68164766 + B4 SINE B4 63 226 -66 8 1569 2770 172 19 22 chr1 129030677 129031217 -68164215 - RMER15 LTR ERVL -27 548 11 8 1569 594 0 0 0 chr1 129031293 129031359 -68164073 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 1569 381 166 45 51 chr1 129032679 129032857 -68162575 + CT-rich Low_complexity Low_complexity 4 180 0 8 1569 777 186 109 26 chr1 129033013 129033171 -68162261 + ID_B1 SINE B4 14 192 -32 8 1569 1682 154 146 15 chr1 129033171 129033501 -68161931 - ORR1D1 LTR MaLR -1 373 1 9 1569 777 186 109 26 chr1 129033501 129033535 -68161897 + ID_B1 SINE B4 193 222 -2 8 1569 192 40 0 0 chr1 129033535 129033560 -68161872 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1569 4952 71 39 5 chr1 129033560 129034222 -68161210 + L1_Mus3 LINE L1 5954 6638 0 9 1569 186 43 0 0 chr1 129034831 129034854 -68160578 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1569 527 188 8 33 chr1 129034919 129035040 -68160392 - RSINE1 SINE B4 -38 127 10 9 1569 635 283 122 14 chr1 129035509 129035731 -68159701 + B4 SINE B4 47 292 0 9 1569 21 36 0 0 chr1 129035774 129035802 -68159630 + AT_rich Low_complexity Low_complexity 1 28 0 9 1569 414 0 0 0 chr1 129035814 129035860 -68159572 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 9 1569 270 123 26 40 chr1 129037419 129037495 -68157937 + (TTTA)n Simple_repeat Simple_repeat 4 78 0 9 1569 246 32 0 0 chr1 129037497 129037528 -68157904 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1569 427 287 7 56 chr1 129037546 129037690 -68157742 - RSINE1 SINE B4 -25 140 4 1 1569 746 226 97 158 chr1 129037957 129038267 -68157165 + B4 SINE B4 2 292 0 1 1569 519 182 0 0 chr1 129039568 129039689 -68155743 + (TATG)n Simple_repeat Simple_repeat 1 121 0 1 1569 4291 133 56 44 chr1 129039701 129040423 -68155009 + RLTR13D6 LTR ERVK 1 742 -160 1 1569 2519 65 22 0 chr1 129040423 129040745 -68154687 + L1_Mus1 LINE L1 6238 6566 -1 1 1569 4291 133 56 44 chr1 129040745 129040913 -68154519 + RLTR13D6 LTR ERVK 743 902 0 1 1569 219 218 0 0 chr1 129040913 129040968 -68154464 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1569 489 255 37 12 chr1 129040968 129041131 -68154301 + L1MC LINE L1 2700 2866 -3280 1 1569 472 277 0 7 chr1 129041124 129041262 -68154170 + L1MC LINE L1 4304 4440 -1706 1 1569 252 0 0 0 chr1 129041264 129041292 -68154140 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1569 713 218 60 16 chr1 129041292 129041474 -68153958 - B3A SINE B2 0 216 27 1 1569 722 277 73 0 chr1 129041480 129041657 -68153775 - B3 SINE B2 -23 193 4 1 1569 850 275 5 5 chr1 129041833 129042041 -68153391 + ID_B1 SINE B4 2 209 -15 1 1569 231 36 0 0 chr1 129042048 129042076 -68153356 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 1 1569 537 110 28 0 chr1 129042076 129042185 -68153247 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 1 1569 313 232 0 28 chr1 129042667 129042738 -68152694 + B1_Mus2 SINE Alu 1 69 -78 1 1569 297 0 0 0 chr1 129042749 129042782 -68152650 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1569 1215 227 79 11 chr1 129042783 129043139 -68152293 + L1MC1 LINE L1 2487 2866 -3280 1 1569 641 256 11 0 chr1 129043132 129043308 -68152124 + L1MC1 LINE L1 4304 4481 -1665 1 1569 405 102 0 0 chr1 129043319 129043378 -68152054 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1569 279 0 0 0 chr1 129043378 129043408 -68152024 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1569 1274 206 198 15 chr1 129043408 129043701 -68151731 + Lx9 LINE L1 7165 7476 -168 1 1569 333 0 0 0 chr1 129043701 129043738 -68151694 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1569 243 0 0 0 chr1 129043745 129043772 -68151660 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1569 1274 206 198 15 chr1 129043772 129043870 -68151562 + Lx9 LINE L1 7484 7636 -8 1 1569 1126 244 62 19 chr1 129043877 129044249 -68151183 + L1MC1 LINE L1 4698 5085 -1061 1 1569 993 235 62 112 chr1 129044254 129044592 -68150840 - MTE2a LTR MaLR -5 374 51 1 1569 2543 140 38 55 chr1 129044592 129045061 -68150371 + RMER6B LTR ERVK 1 461 0 1 1569 993 235 62 112 chr1 129045061 129045106 -68150326 - MTE2a LTR MaLR -329 50 10 1 1569 886 42 8 8 chr1 129045154 129045274 -68150158 + (GGAA)n Simple_repeat Simple_repeat 4 123 0 1 1569 547 266 105 11 chr1 129045331 129045521 -68149911 + B4 SINE B4 14 221 -71 1 1569 360 0 0 0 chr1 129045580 129045620 -68149812 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1569 848 280 53 34 chr1 129045651 129046006 -68149426 + L1MC1 LINE L1 5970 6331 -2 1 1569 437 256 32 0 chr1 129046031 129046156 -68149276 - MLT1D LTR MaLR -355 150 22 1 1569 1073 99 0 6 chr1 129046395 129046557 -68148875 + (GAGAA)n Simple_repeat Simple_repeat 1 161 0 1 1569 489 47 0 0 chr1 129046557 129046620 -68148812 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 1 1569 708 272 30 20 chr1 129046624 129046823 -68148609 + B4 SINE B4 92 292 0 1 1569 766 77 15 15 chr1 129046830 129046962 -68148470 + (CAGAGA)n Simple_repeat Simple_repeat 1 132 0 1 1569 412 236 142 7 chr1 129046964 129047105 -68148327 + L1M3 LINE L1 5401 5560 -611 1 1569 487 266 73 0 chr1 129047151 129047275 -68148157 + RSINE1 SINE B4 2 134 -31 1 1569 21 36 0 0 chr1 129047357 129047385 -68148047 + AT_rich Low_complexity Low_complexity 1 28 0 1 1569 1090 305 78 34 chr1 129047880 129048379 -68147053 - Lx8 LINE L1 0 7473 6953 1 1569 326 42 21 0 chr1 129049104 129049152 -68146280 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1569 224 284 114 57 chr1 129049535 129049658 -68145774 + B3 SINE B2 2 131 -85 1 1569 613 272 37 21 chr1 129050307 129050518 -68144914 + B3A SINE B2 1 213 -3 1 1569 240 35 0 0 chr1 129050521 129050550 -68144882 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1569 273 244 0 0 chr1 129050567 129050653 -68144779 + Lx6 LINE L1 7362 7447 -13 1 1569 1062 76 7 46 chr1 129050662 129050814 -68144618 + B1_Mus2 SINE Alu 2 147 0 1 1569 342 0 0 0 chr1 129051288 129051326 -68144106 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1569 625 242 93 41 chr1 129051594 129051788 -68143644 + ID_B1 SINE B4 9 212 -12 1 1569 378 0 0 0 chr1 129051796 129051838 -68143594 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1569 396 0 0 0 chr1 129051838 129051881 -68143551 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1569 1312 86 48 5 chr1 129051905 129052092 -68143340 + B2_Mm2 SINE B2 1 195 0 1 1569 1467 189 93 3 chr1 129052121 129052444 -68142988 + MTD LTR MaLR 68 419 0 1 1569 261 0 0 0 chr1 129052479 129052508 -68142924 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1569 1104 178 24 24 chr1 129052540 129052753 -68142679 + B3 SINE B2 2 214 -2 1 1569 286 258 174 10 chr1 129052770 129052868 -68142564 - B3A SINE B2 -84 114 1 1 1569 244 0 27 27 chr1 129053124 129053161 -68142271 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1569 700 186 0 142 chr1 129053390 129053559 -68141873 + B1_Mus1 SINE Alu 4 148 0 1 1569 641 179 0 53 chr1 129053738 129053927 -68141505 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1569 203 259 0 24 chr1 129053947 129054012 -68141420 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 1 1569 800 220 195 40 chr1 129054012 129054263 -68141169 - B4 SINE B4 0 292 3 1 1569 203 259 0 24 chr1 129054263 129054280 -68141152 + (TATATG)n Simple_repeat Simple_repeat 6 22 0 1 1569 297 0 0 0 chr1 129054280 129054313 -68141119 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1569 252 0 0 0 chr1 129054374 129054402 -68141030 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1569 496 370 27 0 chr1 129054511 129054695 -68140737 - Lx8 LINE L1 -146 7327 7139 1 1569 481 174 0 0 chr1 129055076 129055162 -68140270 + B4 SINE B4 1 86 -206 1 1569 281 326 45 28 chr1 129055185 129055362 -68140070 + RLTR12B LTR ERVK 96 275 -253 1 1569 258 230 61 174 chr1 129055395 129055642 -68139790 - RMER10A LTR ERVL -9 433 215 1 1569 1040 271 90 20 chr1 129055651 129055997 -68139435 - MTD LTR MaLR -40 379 10 1 1569 605 138 7 0 chr1 129056082 129056227 -68139205 + (TTG)n Simple_repeat Simple_repeat 2 147 0 1 1569 691 272 44 53 chr1 129056227 129056452 -68138980 - B4 SINE B4 -68 224 2 1 1569 877 291 64 134 chr1 129057696 129057913 -68137519 - MTEb LTR MaLR -6 373 168 1 1569 738 224 0 0 chr1 129057913 129058060 -68137372 - B1_Mur2 SINE Alu 0 149 3 1 1569 877 291 64 134 chr1 129058060 129058231 -68137201 - MTEb LTR MaLR -212 167 12 1 1569 870 309 62 77 chr1 129058922 129059388 -68136044 + MT2A LTR ERVL 53 511 -22 1 1569 1267 215 146 53 chr1 129059570 129059809 -68135623 + RMER4A LTR ERVK 1 265 -201 1 1569 267 31 0 0 chr1 129059809 129059841 -68135591 + (TCC)n Simple_repeat Simple_repeat 3 34 0 1 1569 1267 215 146 53 chr1 129059841 129059852 -68135580 + RMER4A LTR ERVK 266 283 -183 1 1569 297 75 0 0 chr1 129059852 129059892 -68135540 + (TGG)n Simple_repeat Simple_repeat 1 40 0 1 1569 1267 215 146 53 chr1 129059892 129060058 -68135374 + RMER4A LTR ERVK 284 457 -9 1 1569 1775 202 44 3 chr1 129060084 129060446 -68134986 - MTE2a LTR MaLR -2 377 1 1 1569 1346 186 63 76 chr1 129060710 129061093 -68134339 + MTE2a LTR MaLR 2 379 0 1 1569 1019 268 18 65 chr1 129061692 129061971 -68133461 - B4 SINE B4 -23 269 4 1 1569 1087 189 90 28 chr1 129062186 129062398 -68133034 + URR1B DNA MER1_type 1 225 0 1 1569 1056 305 64 21 chr1 129062556 129062931 -68132501 - MTD LTR MaLR 0 419 29 1 1569 267 31 0 0 chr1 129063028 129063060 -68132372 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1569 2039 125 25 6 chr1 129063138 129063452 -68131980 + RLTR14 LTR ERV1 11 330 -52 1 1569 520 255 9 62 chr1 129063562 129063707 -68131725 - B4 SINE B4 -60 232 94 1 1569 279 372 38 55 chr1 129063693 129063816 -68131616 - MLT1D LTR MaLR -304 323 199 1 1569 891 203 20 65 chr1 129063816 129064016 -68131416 + B3A SINE B2 1 191 -7 1 1569 301 326 28 48 chr1 129064016 129064185 -68131247 - MLT1D LTR MaLR -429 198 37 1 1569 207 0 0 0 chr1 129065027 129065050 -68130382 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1569 271 113 32 0 chr1 129065280 129065342 -68130090 + (CAA)n Simple_repeat Simple_repeat 2 65 0 1 1569 1129 78 0 0 chr1 129065401 129065543 -68129889 + B1_Mus2 SINE Alu 1 142 -5 1 1569 486 33 0 0 chr1 129065765 129065825 -68129607 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1569 432 343 107 46 chr1 129065826 129065949 -68129483 - B4A SINE B4 0 292 166 1 1569 286 273 13 0 chr1 129065949 129066026 -68129406 - ID2 SINE ID -4 79 2 1 1569 608 280 40 7 chr1 129066026 129066177 -68129255 - ID_B1 SINE B4 -66 158 3 1 1569 309 185 79 9 chr1 129066177 129066292 -68129140 - L1MC2 LINE L1 -361 5972 5842 1 1569 211 320 37 37 chr1 129066732 129066813 -68128619 + B4 SINE B4 2 82 -210 1 1569 433 300 124 30 chr1 129066875 129067140 -68128292 + B4A SINE B4 2 291 -1 1 1569 7244 58 14 3 chr1 129067159 129068043 -68127389 - RLTR13B1 LTR ERVK 0 893 1 1 1569 955 8 15 22 chr1 129068429 129068564 -68126868 + (TCTCC)n Simple_repeat Simple_repeat 3 136 0 1 1569 364 267 44 30 chr1 129068651 129068739 -68126693 + ORR1D1 LTR MaLR 1 90 -280 1 1569 4011 200 26 45 chr1 129068739 129069650 -68125782 + RMER13B LTR ERVK 1 894 -14 1 1569 376 280 93 15 chr1 129069674 129069906 -68125526 + ORR1D1 LTR MaLR 95 374 0 1 1569 252 286 14 0 chr1 129069926 129069996 -68125436 + MLT1F2 LTR MaLR 490 560 0 1 1569 423 0 0 0 chr1 129070583 129070630 -68124802 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1569 950 271 79 11 chr1 129070739 129071004 -68124428 + B4A SINE B4 1 283 -9 1 1569 237 65 0 0 chr1 129071024 129071055 -68124377 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1569 375 89 0 0 chr1 129071075 129071131 -68124301 + (CCA)n Simple_repeat Simple_repeat 1 56 0 1 1569 2038 131 38 16 chr1 129071378 129071697 -68123735 - ORR1A3 LTR MaLR 0 326 1 2 1569 528 302 135 54 chr1 129071715 129071974 -68123458 + B4A SINE B4 2 281 -11 2 1569 381 91 18 0 chr1 129072231 129072286 -68123146 - ORR1B1 LTR MaLR 0 367 312 2 1569 3985 62 4 17 chr1 129072441 129072964 -68122468 - L1Md_F2 LINE L1 0 6582 6067 2 1569 2006 167 18 0 chr1 129072970 129073300 -68122132 - ORR1B1 LTR MaLR -48 346 11 2 1569 600 286 84 12 chr1 129073342 129073684 -68121748 + MER119 DNA MER1_type 193 583 0 2 1569 276 278 28 0 chr1 129074372 129074444 -68120988 + Lx8 LINE L1 7156 7229 -244 2 1569 455 303 72 54 chr1 129074449 129074728 -68120704 + Lx8 LINE L1 7179 7462 -11 2 1569 326 295 80 58 chr1 129074845 129074982 -68120450 + RMER30 DNA MER1_type 63 202 0 2 1569 904 289 9 4 chr1 129075289 129075515 -68119917 + B4 SINE B4 1 227 -65 2 1569 938 251 19 14 chr1 129075516 129075730 -68119702 + B3 SINE B2 2 216 0 2 1569 658 111 0 0 chr1 129075745 129075835 -68119597 - B1_Mus2 SINE Alu -12 135 46 2 1569 567 261 50 13 chr1 129076575 129076734 -68118698 + RSINE1 SINE B4 1 165 0 2 1569 678 250 37 37 chr1 129076796 129077012 -68118420 + B3 SINE B2 1 216 0 2 1569 276 289 0 90 chr1 129077513 129077646 -68117786 + MER20 DNA MER1_type 14 134 -85 2 1569 587 274 26 59 chr1 129077647 129077831 -68117601 - B3A SINE B2 -13 182 3 2 1569 436 254 216 22 chr1 129077867 129078048 -68117384 - B3 SINE B2 0 216 1 2 1569 755 258 47 151 chr1 129078216 129078535 -68116897 + RLTR11A2 LTR ERVK 1 286 -167 2 1569 247 288 177 18 chr1 129078678 129078791 -68116641 - PB1 SINE Alu -17 132 2 2 1569 651 246 60 102 chr1 129078795 129079030 -68116402 - MTE2a LTR MaLR -124 255 31 2 1569 1834 234 22 64 chr1 129079031 129079529 -68115903 - RMER19C LTR ERVK 0 611 135 2 1569 359 224 75 108 chr1 129079569 129079689 -68115743 + PB1 SINE Alu 1 116 -11 2 1569 218 300 166 6 chr1 129079764 129079939 -68115493 + MIR SINE MIR 65 259 -3 2 1569 269 109 46 15 chr1 129080166 129080231 -68115201 + CT-rich Low_complexity Low_complexity 4 70 0 2 1569 405 0 0 0 chr1 129080479 129080524 -68114908 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1569 675 213 0 0 chr1 129080524 129080646 -68114786 - ID_B1 SINE B4 -12 212 91 2 1569 402 39 0 0 chr1 129081151 129081203 -68114229 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1569 297 0 0 0 chr1 129081203 129081235 -68114197 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1569 437 297 226 22 chr1 129081268 129081449 -68113983 - B4 SINE B4 -69 223 6 2 1569 839 246 50 123 chr1 129081699 129081757 -68113675 - B4 SINE B4 -12 280 231 2 1569 1012 122 14 7 chr1 129081757 129081905 -68113527 - B1_Mur4 SINE Alu -1 149 1 2 1569 839 246 50 123 chr1 129081905 129082147 -68113285 - B4 SINE B4 -62 230 2 2 1569 215 279 83 75 chr1 129082934 129083054 -68112378 - L2c LINE L2 -1 3386 3266 2 1569 534 341 12 0 chr1 129083106 129083270 -68112162 + B3A SINE B2 7 172 -26 2 1569 1356 83 11 6 chr1 129083312 129083494 -68111938 + B2_Mm1t SINE B2 2 184 -9 2 1569 22 56 0 0 chr1 129083504 129083540 -68111892 + AT_rich Low_complexity Low_complexity 1 36 0 2 1569 289 283 83 152 chr1 129083618 129083835 -68111597 - ORR1E LTR MaLR 0 359 158 2 1569 459 0 0 0 chr1 129083879 129083930 -68111502 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1569 803 273 88 24 chr1 129083930 129084107 -68111325 - B4 SINE B4 -23 269 80 2 1569 180 0 0 0 chr1 129084107 129084127 -68111305 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1569 803 273 88 24 chr1 129084127 129084200 -68111232 - B4 SINE B4 -213 79 3 2 1569 882 275 6 7 chr1 129084754 129084965 -68110467 + B3A SINE B2 8 216 0 2 1569 702 220 0 34 chr1 129085724 129085870 -68109562 - B1_Mur1 SINE Alu -6 143 3 2 1569 280 0 0 48 chr1 129085870 129085912 -68109520 + (TAA)n Simple_repeat Simple_repeat 3 42 0 2 1569 2765 79 123 26 chr1 129085919 129086349 -68109083 + MT2C_Mm LTR ERVL 4 475 0 2 1569 35 0 0 0 chr1 129086350 129086385 -68109047 + AT_rich Low_complexity Low_complexity 1 35 0 2 1569 204 143 24 0 chr1 129086392 129086434 -68108998 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1569 280 250 108 27 chr1 129086435 129086509 -68108923 - RSINE1 SINE B4 0 165 86 2 1569 260 320 0 49 chr1 129086637 129086719 -68108713 - RSINE1 SINE B4 -84 81 4 2 1569 741 312 38 34 chr1 129086894 129087159 -68108273 - B4A SINE B4 0 292 27 2 1569 351 299 23 0 chr1 129087472 129087559 -68107873 + 5S rRNA rRNA 3 91 -30 2 1569 461 216 152 9 chr1 129087577 129087689 -68107743 + B1_Mur1 SINE Alu 5 132 -17 2 1569 489 84 0 0 chr1 129087694 129087765 -68107667 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 1569 573 15 0 0 chr1 129087765 129087831 -68107601 + (GAA)n Simple_repeat Simple_repeat 3 68 0 2 1569 239 300 159 45 chr1 129087847 129087866 -68107566 + AmnSINE1 SINE SINE 4 47 -528 2 1569 283 241 23 35 chr1 129087866 129087952 -68107480 + 5S rRNA rRNA 31 115 -6 2 1569 239 300 159 45 chr1 129087952 129088004 -68107428 + AmnSINE1 SINE SINE 48 178 -397 2 1569 805 262 54 10 chr1 129088166 129088370 -68107062 + B4A SINE B4 2 214 -78 2 1569 1561 234 62 19 chr1 129088370 129088451 -68106981 + MT2A LTR ERVL 3 84 -449 2 1569 198 0 0 0 chr1 129088451 129088473 -68106959 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1569 1561 234 62 19 chr1 129088473 129088761 -68106671 + MT2A LTR ERVL 85 387 -146 2 1569 249 186 82 0 chr1 129088777 129088852 -68106580 + MT2A LTR ERVL 467 555 -1 2 1569 285 29 0 0 chr1 129088919 129088953 -68106479 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1569 417 230 271 23 chr1 129089623 129089752 -68105680 + RSINE1 SINE B4 3 163 -2 2 1569 207 0 0 0 chr1 129090225 129090248 -68105184 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1569 2480 124 8 8 chr1 129090268 129090650 -68104782 - RLTR14 LTR ERV1 0 382 1 2 1569 1068 269 81 30 chr1 129090916 129091249 -68104183 + ORR1E LTR MaLR 10 359 0 2 1569 243 369 114 14 chr1 129091271 129091491 -68103941 - MLT1H LTR MaLR -200 349 108 2 1569 311 266 79 3 chr1 129091573 129091687 -68103745 + MLT1D LTR MaLR 1 117 -510 2 1569 640 233 0 15 chr1 129091728 129091859 -68103573 - RSINE1 SINE B4 -33 132 4 2 1569 416 360 0 0 chr1 129092165 129092326 -68103106 + (TG)n Simple_repeat Simple_repeat 1 161 0 2 1569 939 273 49 42 chr1 129092326 129092613 -68102819 - B4 SINE B4 0 292 4 2 1569 270 273 32 64 chr1 129092624 129092718 -68102714 + MLT1D LTR MaLR 403 493 -12 2 1569 355 238 12 24 chr1 129092758 129092840 -68102592 + B3A SINE B2 1 81 -117 2 1569 201 74 0 0 chr1 129093122 129093149 -68102283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1569 1111 95 7 0 chr1 129093202 129093349 -68102083 - B1_Mus1 SINE Alu 0 148 1 2 1569 1164 48 7 0 chr1 129093364 129093510 -68101922 - B1_Mus2 SINE Alu 0 147 1 2 1569 344 257 8 66 chr1 129093634 129093755 -68101677 - HAL1-3A_ME LINE L1 -769 2089 1976 2 1569 342 169 0 0 chr1 129093755 129093820 -68101612 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1569 2908 154 61 34 chr1 129093822 129094179 -68101253 - RLTR20A LTR ERVK -4 537 195 2 1569 426 39 0 0 chr1 129094179 129094231 -68101201 + (TCCCC)n Simple_repeat Simple_repeat 4 55 0 2 1569 2908 154 61 34 chr1 129094231 129094396 -68101036 - RLTR20A LTR ERVK -347 194 2 2 1569 381 93 0 0 chr1 129094396 129094450 -68100982 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1569 225 346 65 28 chr1 129095131 129095238 -68100194 - MLT1L LTR MaLR -147 463 353 2 1569 238 338 71 78 chr1 129095290 129095444 -68099988 + ZP3AR Satellite Satellite 41 193 -19 2 1569 542 244 52 109 chr1 129095400 129095492 -68099940 + ID_B1 SINE B4 2 218 -6 2 1569 833 159 7 0 chr1 129095492 129095630 -68099802 + B1_Mur4 SINE Alu 6 144 -6 2 1569 849 221 39 25 chr1 129095853 129096057 -68099375 + ID_B1 SINE B4 4 210 -14 2 1569 446 202 35 6 chr1 129096068 129096242 -68099190 + GA-rich Low_complexity Low_complexity 1 179 0 2 1569 417 291 117 8 chr1 129096269 129096397 -68099035 + RSINE1 SINE B4 5 146 -19 2 1569 266 50 25 0 chr1 129096417 129096457 -68098975 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1569 389 188 14 0 chr1 129096837 129096906 -68098526 - RSINE1 SINE B4 -8 157 88 2 1569 242 275 159 0 chr1 129097307 129097376 -68098056 - ID4_ SINE ID -1 82 3 2 1569 304 261 14 0 chr1 129097457 129097526 -68097906 - ID4 SINE ID -13 70 1 2 1569 1008 247 189 26 chr1 129098731 129099080 -68096352 + MTD LTR MaLR 1 406 -13 2 1569 1318 213 24 28 chr1 129099345 129099635 -68095797 - B4 SINE B4 -3 289 1 2 1569 433 292 96 14 chr1 129100821 129100967 -68094465 - MIRb SINE MIR -19 249 92 2 1569 484 244 49 25 chr1 129100968 129101090 -68094342 + ID_B1 SINE B4 80 204 -20 2 1569 252 149 0 0 chr1 129103190 129103237 -68092195 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1569 189 0 0 0 chr1 129104066 129104087 -68091345 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1569 878 294 0 5 chr1 129104098 129104296 -68091136 - B4 SINE B4 -14 278 82 2 1569 498 108 0 0 chr1 129104310 129104393 -68091039 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1569 432 309 132 78 chr1 129104403 129104645 -68090787 - B4 SINE B4 -30 262 8 2 1569 281 295 55 33 chr1 129104652 129104743 -68090689 - B4 SINE B4 -199 93 1 2 1569 238 220 0 39 chr1 129105205 129105257 -68090175 + C-rich Low_complexity Low_complexity 3 52 0 2 1569 449 160 0 16 chr1 129105275 129105396 -68090036 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 2 1569 1053 274 23 19 chr1 129105397 129105661 -68089771 - B4 SINE B4 -11 281 17 2 1570 508 265 57 29 chr1 129106310 129106450 -68088982 - ID_B1 SINE B4 0 224 81 2 1570 182 220 0 17 chr1 129106513 129106573 -68088859 + CT-rich Low_complexity Low_complexity 4 62 0 2 1570 514 166 28 17 chr1 129106576 129106754 -68088678 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1570 390 252 60 100 chr1 129106787 129106937 -68088495 - B4A SINE B4 0 292 149 3 1570 291 229 82 0 chr1 129106964 129107025 -68088407 - B4A SINE B4 -218 74 9 3 1570 375 89 0 0 chr1 129107263 129107319 -68088113 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 3 1570 786 269 93 41 chr1 129107578 129107636 -68087796 - B4A SINE B4 -10 282 225 3 1570 297 0 0 0 chr1 129107636 129107669 -68087763 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1570 786 269 93 41 chr1 129107669 129107878 -68087554 - B4A SINE B4 -68 224 3 3 1570 442 309 0 54 chr1 129108086 129108233 -68087199 + B1F2 SINE Alu 1 139 -10 3 1570 424 273 22 78 chr1 129108319 129108498 -68086934 - RMER30 DNA MER1_type -32 170 2 3 1570 276 323 0 0 chr1 129108499 129108561 -68086871 + ID2 SINE ID 22 83 0 3 1570 315 0 0 0 chr1 129108604 129108639 -68086793 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1570 315 0 0 0 chr1 129108639 129108673 -68086759 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1570 454 284 0 0 chr1 129108770 129108858 -68086574 + RSINE1 SINE B4 15 102 -63 3 1570 506 235 133 48 chr1 129108943 129109131 -68086301 + ID_B1 SINE B4 2 205 -19 3 1570 261 0 0 0 chr1 129109141 129109170 -68086262 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1570 182 321 164 22 chr1 129109248 129109382 -68086050 - MIR SINE MIR -71 191 39 3 1570 776 232 87 15 chr1 129109861 129110067 -68085365 + ID_B1 SINE B4 1 221 -3 3 1570 225 0 0 0 chr1 129110104 129110129 -68085303 + (CCA)n Simple_repeat Simple_repeat 1 25 0 3 1570 419 250 125 0 chr1 129110531 129110643 -68084789 + RSINE1 SINE B4 38 163 -2 3 1570 217 252 145 73 chr1 129110548 129110672 -68084760 + B2_Mm2 SINE B2 54 186 -9 3 1570 1028 254 20 63 chr1 129110693 129110996 -68084436 + B4A SINE B4 3 292 0 3 1570 207 291 0 0 chr1 129110998 129111053 -68084379 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 1570 408 271 8 32 chr1 129111124 129111250 -68084182 - PB1 SINE Alu -4 123 1 3 1570 322 336 8 8 chr1 129111263 129111380 -68084052 - PB1D10 SINE Alu 0 117 1 3 1570 1020 259 47 76 chr1 129111645 129111946 -68083486 + B4 SINE B4 1 292 0 3 1570 399 135 63 13 chr1 129111952 129112110 -68083322 + (CA)n Simple_repeat Simple_repeat 2 167 0 3 1570 184 59 59 0 chr1 129112125 129112159 -68083273 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1570 22 0 0 0 chr1 129112503 129112525 -68082907 + AT_rich Low_complexity Low_complexity 1 22 0 3 1570 369 110 41 33 chr1 129112702 129112824 -68082608 + (TG)n Simple_repeat Simple_repeat 1 123 0 3 1570 707 291 46 86 chr1 129112824 129113128 -68082304 - B4A SINE B4 0 292 1 3 1570 1002 246 169 27 chr1 129113503 129113870 -68081562 - MTD LTR MaLR 0 419 1 3 1570 567 0 0 0 chr1 129113877 129113940 -68081492 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1570 748 243 33 28 chr1 129113940 129114152 -68081280 - ID_B1 SINE B4 -10 214 2 3 1570 487 292 0 0 chr1 129114168 129114274 -68081158 - B1F2 SINE Alu -19 130 25 3 1570 304 322 0 87 chr1 129114274 129114294 -68081138 - ID_B1 SINE B4 -19 205 91 3 1570 357 24 0 0 chr1 129114711 129114753 -68080679 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1570 316 259 35 84 chr1 129114755 129114872 -68080560 - B4 SINE B4 -157 135 20 3 1570 272 284 205 0 chr1 129115035 129115162 -68080270 - MLT1D LTR MaLR -99 406 254 3 1570 208 161 35 18 chr1 129115430 129115487 -68079945 + (TATG)n Simple_repeat Simple_repeat 1 58 0 3 1570 347 299 102 109 chr1 129115488 129115781 -68079651 - B4A SINE B4 0 292 2 3 1570 189 305 95 24 chr1 129115919 129116003 -68079429 - MIRm SINE MIR -138 138 49 3 1570 25 65 0 0 chr1 129116705 129116751 -68078681 + AT_rich Low_complexity Low_complexity 1 46 0 3 1570 231 204 20 0 chr1 129116863 129116912 -68078520 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1570 286 224 33 76 chr1 129116935 129117027 -68078405 - RSINE1 SINE B4 0 165 78 3 1570 288 346 12 36 chr1 129117066 129117234 -68078198 - B4A SINE B4 -127 165 2 3 1570 562 289 67 24 chr1 129117241 129117450 -68077982 - ID_B1 SINE B4 -6 218 1 3 1570 2331 73 9 60 chr1 129117778 129118114 -68077318 + ORR1A2 LTR MaLR 1 319 -8 3 1570 592 278 43 14 chr1 129118173 129118381 -68077051 - B3 SINE B2 0 216 3 3 1570 186 118 0 0 chr1 129119105 129119139 -68076293 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1570 345 172 0 0 chr1 129119640 129119704 -68075728 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1570 245 200 36 0 chr1 129119981 129120036 -68075396 + ID_B1 SINE B4 166 222 -2 3 1570 288 295 12 163 chr1 129120346 129120413 -68075019 + Charlie4a DNA MER1_type 59 125 -383 3 1570 630 248 65 28 chr1 129120413 129120629 -68074803 - ID_B1 SINE B4 0 224 1 3 1570 288 295 12 163 chr1 129120629 129120727 -68074705 + Charlie4a DNA MER1_type 126 199 -309 3 1570 342 222 0 27 chr1 129120837 129120911 -68074521 + ID4_ SINE ID 4 75 -8 3 1570 402 198 10 59 chr1 129121030 129121132 -68074300 + ID_B1 SINE B4 1 97 -127 3 1570 1277 267 80 19 chr1 129121139 129121513 -68073919 - MTD LTR MaLR -13 406 10 3 1570 431 296 32 8 chr1 129121524 129121650 -68073782 + ID_B1 SINE B4 96 224 0 3 1570 216 0 0 0 chr1 129122106 129122130 -68073302 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1570 1096 203 15 0 chr1 129122855 129123057 -68072375 - ID_B1 SINE B4 -19 205 1 3 1570 195 42 0 0 chr1 129123378 129123402 -68072030 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1570 1000 296 17 20 chr1 129123433 129123726 -68071706 - B4 SINE B4 0 292 1 3 1570 373 325 22 67 chr1 129124013 129124191 -68071241 - B4A SINE B4 -118 174 5 3 1570 219 352 66 0 chr1 129125316 129125407 -68070025 - MIRc SINE MIR -107 161 65 3 1570 259 261 0 0 chr1 129125668 129125714 -68069718 + ID4_ SINE ID 2 47 -36 3 1570 627 246 58 74 chr1 129125751 129125940 -68069492 - ID_B1 SINE B4 -15 209 24 3 1570 461 71 14 0 chr1 129126463 129126533 -68068899 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1570 198 103 0 0 chr1 129126610 129126639 -68068793 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 1570 828 282 62 8 chr1 129126664 129127005 -68068427 - L1MA5A LINE L1 -195 5961 5599 3 1570 267 315 47 0 chr1 129127282 129127409 -68068023 + L1MB8 LINE L1 5912 6044 -134 3 1570 1148 247 48 10 chr1 129127444 129127738 -68067694 - MTEa LTR MaLR -74 305 1 3 1570 283 284 12 58 chr1 129127789 129127875 -68067557 - ID2 SINE ID 0 83 2 3 1570 361 260 14 7 chr1 129129231 129129378 -68066054 + C-rich Low_complexity Low_complexity 1 148 0 3 1570 191 274 7 29 chr1 129129344 129129483 -68065949 + CT-rich Low_complexity Low_complexity 3 138 0 3 1570 369 0 0 0 chr1 129129542 129129583 -68065849 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1570 834 197 141 77 chr1 129130220 129130323 -68065109 - ORR1D1 LTR MaLR -84 290 182 3 1570 192 40 0 0 chr1 129130323 129130348 -68065084 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1570 834 197 141 77 chr1 129130348 129130364 -68065068 - ORR1D1 LTR MaLR -193 181 170 3 1570 270 0 0 0 chr1 129130364 129130394 -68065038 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1570 432 0 0 0 chr1 129130394 129130441 -68064991 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1570 834 197 141 77 chr1 129130441 129130567 -68064865 - ORR1D1 LTR MaLR -205 169 28 3 1570 223 265 14 68 chr1 129130613 129130686 -68064746 + ID_B1 SINE B4 89 157 -67 3 1570 187 225 12 24 chr1 129130810 129130892 -68064540 + CT-rich Low_complexity Low_complexity 2 82 0 3 1570 256 261 102 59 chr1 129131728 129131846 -68063586 - MER2 DNA MER2_type -150 195 73 3 1570 228 250 0 67 chr1 129131875 129131935 -68063497 - ID_B1 SINE B4 -51 173 118 3 1570 367 304 86 35 chr1 129132120 129132318 -68063114 + Charlie4a DNA MER1_type 156 363 -145 3 1570 307 215 31 0 chr1 129132344 129132409 -68063023 - ID_B1 SINE B4 -48 176 110 3 1570 535 208 79 16 chr1 129132477 129132604 -68062828 + ID_B1 SINE B4 1 135 -89 3 1570 360 0 0 0 chr1 129132604 129132644 -68062788 + (CAAAC)n Simple_repeat Simple_repeat 5 44 0 3 1570 489 17 0 0 chr1 129132789 129132847 -68062585 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1570 528 261 30 7 chr1 129132857 129132992 -68062440 - RSINE1 SINE B4 -12 153 16 3 1570 207 69 0 0 chr1 129133478 129133507 -68061925 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 3 1570 6256 28 0 0 chr1 129133626 129134336 -68061096 - L1Md_T LINE L1 0 6582 5873 3 1570 310 276 138 0 chr1 129134425 129134543 -68060889 - MTEa LTR MaLR -230 149 16 3 1570 302 310 20 0 chr1 129134625 129134725 -68060707 + B2_Mm1t SINE B2 1 102 -91 3 1570 1180 75 0 0 chr1 129134764 129134910 -68060522 + B1_Mus2 SINE Alu 2 147 0 3 1570 252 0 0 0 chr1 129134910 129134938 -68060494 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1570 381 43 0 0 chr1 129135419 129135466 -68059966 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 3 1570 604 232 27 70 chr1 129135466 129135651 -68059781 - B3A SINE B2 -19 179 3 3 1570 570 263 7 0 chr1 129137010 129137147 -68058285 + ID_B1 SINE B4 2 139 -85 3 1570 300 0 104 30 chr1 129137252 129137319 -68058113 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 3 1570 1363 236 84 45 chr1 129137319 129137674 -68057758 - MTEa LTR MaLR -8 371 3 3 1570 198 0 0 0 chr1 129138132 129138154 -68057278 + (TCC)n Simple_repeat Simple_repeat 2 23 0 3 1570 399 239 15 14 chr1 129138168 129138278 -68057154 - PB1 SINE Alu -2 125 41 3 1570 22 35 0 0 chr1 129138334 129138363 -68057069 + AT_rich Low_complexity Low_complexity 1 29 0 3 1570 288 0 0 0 chr1 129138527 129138559 -68056873 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1570 266 222 30 45 chr1 129138671 129138737 -68056695 + ID4_ SINE ID 2 66 -17 3 1570 315 234 0 0 chr1 129138767 129138831 -68056601 + B3A SINE B2 2 65 -133 3 1570 1115 220 60 127 chr1 129139173 129139574 -68055858 + MTE2a LTR MaLR 4 377 -2 3 1570 216 0 0 0 chr1 129140249 129140273 -68055159 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 4 1570 778 247 133 16 chr1 129140649 129140904 -68054528 - B4 SINE B4 -6 286 2 4 1570 477 191 38 8 chr1 129141607 129141739 -68053693 + CT-rich Low_complexity Low_complexity 3 138 0 4 1570 627 208 40 0 chr1 129141753 129141878 -68053554 - ID_B1 SINE B4 -1 223 94 4 1570 1009 172 50 5 chr1 129143468 129143667 -68051765 + ID_B1 SINE B4 2 209 -15 4 1570 480 250 174 66 chr1 129144190 129144357 -68051075 + B3 SINE B2 5 189 -27 4 1570 1023 263 13 18 chr1 129144520 129144745 -68050687 + B4A SINE B4 5 228 -64 4 1570 963 214 5 16 chr1 129144745 129144907 -68050525 + B3 SINE B2 1 163 -53 4 1570 429 20 0 0 chr1 129144907 129144957 -68050475 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1570 963 214 5 16 chr1 129144957 129144979 -68050453 + B3 SINE B2 164 183 -33 4 1570 297 0 0 0 chr1 129145492 129145525 -68049907 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1570 192 40 0 0 chr1 129145618 129145643 -68049789 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1570 218 171 0 0 chr1 129145688 129145723 -68049709 + (CGGA)n Simple_repeat Simple_repeat 2 36 0 4 1570 602 303 14 67 chr1 129146003 129146212 -68049220 - B4 SINE B4 -86 206 9 4 1570 1064 252 9 19 chr1 129146526 129146740 -68048692 + ID_B1 SINE B4 9 220 -4 4 1570 3108 148 7 41 chr1 129146806 129147348 -68048084 - RLTR28 LTR ERVL 0 524 1 4 1570 391 206 0 0 chr1 129148120 129148188 -68047244 + ID_B1 SINE B4 145 212 -12 4 1570 360 0 0 0 chr1 129148978 129149018 -68046414 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1570 300 209 45 0 chr1 129149030 129149097 -68046335 - B4 SINE B4 -16 276 207 4 1570 373 282 199 27 chr1 129149098 129149284 -68046148 + MTD LTR MaLR 1 218 -201 4 1570 420 356 25 55 chr1 129149875 129150074 -68045358 + Tigger5 DNA MER2_type 30 222 -2184 4 1570 243 204 23 0 chr1 129150143 129150187 -68045245 - RMER30 DNA MER1_type -151 51 7 4 1570 354 269 0 25 chr1 129150190 129150270 -68045162 + B4 SINE B4 3 80 -212 4 1570 590 236 14 121 chr1 129150296 129150503 -68044929 + B3A SINE B2 1 185 -13 4 1570 364 292 20 20 chr1 129150589 129150687 -68044745 + B4 SINE B4 118 215 -77 4 1570 500 300 25 57 chr1 129150822 129150981 -68044451 - RSINE1 SINE B4 -4 161 8 4 1570 1069 67 0 0 chr1 129150998 129151133 -68044299 + B1_Mus1 SINE Alu 11 145 -3 4 1570 249 33 0 0 chr1 129151133 129151163 -68044269 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1570 340 109 36 18 chr1 129151308 129151364 -68044068 - B1F SINE Alu -6 143 87 4 1570 411 271 0 0 chr1 129151376 129151461 -68043971 - ID SINE ID -139 85 1 4 1570 244 336 104 0 chr1 129152334 129152468 -68042964 + MIRb SINE MIR 60 207 -61 4 1570 1427 253 78 12 chr1 129152517 129152837 -68042595 - MTE2b LTR MaLR -30 349 9 4 1570 449 287 84 59 chr1 129153182 129153478 -68041954 - B4 SINE B4 -6 286 4 4 1570 292 284 65 119 chr1 129153773 129153941 -68041491 - MER21B LTR ERV1 -692 171 13 4 1570 1190 169 18 5 chr1 129154083 129154303 -68041129 - URR1A DNA MER1_type -3 223 1 4 1570 249 196 58 19 chr1 129155170 129155222 -68040210 - RSINE1 SINE B4 0 165 112 4 1570 268 326 6 188 chr1 129155279 129155449 -68039983 - B4 SINE B4 -147 145 7 4 1570 457 246 40 116 chr1 129155483 129155618 -68039814 - L1M3 LINE L1 -369 5814 5688 4 1570 645 218 41 34 chr1 129155618 129155765 -68039667 - B1F2 SINE Alu -1 148 1 4 1570 457 246 40 116 chr1 129155765 129155827 -68039605 - L1M3 LINE L1 -496 5687 5632 4 1570 348 340 70 32 chr1 129155868 129156026 -68039406 - RSINE1 SINE B4 0 165 2 4 1570 423 125 0 0 chr1 129156072 129156144 -68039288 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1570 619 276 63 13 chr1 129156147 129156305 -68039127 - B3A SINE B2 -32 166 1 4 1570 1285 126 19 14 chr1 129156421 129156630 -68038802 - ORR1C2 LTR MaLR 0 384 175 4 1570 210 153 0 48 chr1 129156631 129156693 -68038739 + GA-rich Low_complexity Low_complexity 1 59 0 4 1570 802 155 33 42 chr1 129156717 129156899 -68038533 - ORR1C2 LTR MaLR -190 194 21 4 1570 320 290 165 6 chr1 129156994 129157176 -68038256 + MIR SINE MIR 11 239 -29 4 1570 459 259 41 57 chr1 129157220 129157343 -68038089 - RSINE1 SINE B4 -7 158 38 4 1570 221 241 42 135 chr1 129157569 129157665 -68037767 - B4A SINE B4 -109 183 97 4 1570 3162 108 4 52 chr1 129157667 129158185 -68037247 + RLTR28 LTR ERVL 1 493 -31 4 1570 207 100 0 0 chr1 129158378 129158408 -68037024 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 1570 550 169 0 0 chr1 129159212 129159295 -68036137 + B3A SINE B2 1 83 -115 4 1570 677 228 8 8 chr1 129159302 129159430 -68036002 + B4 SINE B4 163 290 -2 4 1570 915 209 9 34 chr1 129159608 129159805 -68035627 - B3A SINE B2 -6 189 7 4 1570 255 61 0 0 chr1 129159958 129159991 -68035441 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1570 571 250 84 51 chr1 129160259 129160474 -68034958 + ID_B1 SINE B4 2 223 -1 4 1570 7285 158 52 18 chr1 129160983 129162447 -68032985 - L1MD1 LINE L1 -225 6017 4506 4 1570 678 214 148 50 chr1 129162756 129162958 -68032474 - ID_B1 SINE B4 -1 223 2 4 1570 255 331 169 0 chr1 129163078 129163098 -68032334 - B4 SINE B4 -53 239 95 4 1570 478 250 0 0 chr1 129163098 129163202 -68032230 - PB1D7 SINE Alu -7 113 10 4 1570 439 297 50 7 chr1 129163290 129163429 -68032003 - B1F SINE Alu -4 145 1 4 1570 291 95 62 16 chr1 129163894 129163958 -68031474 + GA-rich Low_complexity Low_complexity 4 70 0 4 1570 939 280 27 44 chr1 129164025 129164320 -68031112 + B4 SINE B4 3 292 0 4 1570 270 0 0 0 chr1 129164398 129164428 -68031004 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1570 324 0 0 0 chr1 129164986 129165022 -68030410 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1570 466 307 51 31 chr1 129165050 129165245 -68030187 - B4A SINE B4 -86 206 8 4 1570 333 246 129 36 chr1 129165264 129165403 -68030029 - B4 SINE B4 -74 218 67 4 1570 480 287 59 13 chr1 129165860 129166012 -68029420 - RSINE1 SINE B4 -5 160 2 4 1570 1210 278 96 13 chr1 129166685 129167162 -68028270 + RMER5 LTR ERV1 3 519 -15 4 1570 217 283 17 0 chr1 129167167 129167227 -68028205 + CT-rich Low_complexity Low_complexity 5 65 0 4 1570 399 83 0 0 chr1 129167567 129167627 -68027805 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1570 325 310 58 58 chr1 129167678 129167798 -68027634 + PB1D7 SINE Alu 1 120 0 4 1570 381 93 0 0 chr1 129168475 129168529 -68026903 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1570 471 247 11 149 chr1 129168530 129168711 -68026721 - B4A SINE B4 -14 278 123 4 1570 824 229 36 36 chr1 129168824 129169046 -68026386 - ID_B1 SINE B4 -1 223 2 4 1570 456 238 135 32 chr1 129169086 129169212 -68026220 - RSINE1 SINE B4 -12 153 15 4 1570 21 0 0 0 chr1 129169216 129169237 -68026195 + AT_rich Low_complexity Low_complexity 1 21 0 4 1570 896 230 60 0 chr1 129171054 129171254 -68024178 - B3 SINE B2 -4 212 1 4 1570 313 295 180 72 chr1 129171328 129171467 -68023965 - RSINE1 SINE B4 -1 164 11 4 1570 237 33 0 0 chr1 129171481 129171511 -68023921 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 4 1570 704 204 65 7 chr1 129171604 129171742 -68023690 + MTEa LTR MaLR 5 150 -229 4 1570 302 256 81 75 chr1 129171742 129171777 -68023655 + MT2A LTR ERVL 5 178 -355 4 1570 420 12 118 12 chr1 129171777 129171862 -68023570 + (GGGAA)n Simple_repeat Simple_repeat 3 96 0 4 1570 231 344 33 86 chr1 129171865 129172075 -68023357 + RMER21A LTR ERV1 691 889 -58 4 1570 755 252 69 25 chr1 129171896 129172099 -68023333 + MTEa LTR MaLR 168 379 0 4 1570 762 255 54 18 chr1 129172773 129172988 -68022444 - ID_B1 SINE B4 -7 217 2 4 1570 768 207 27 120 chr1 129173430 129173655 -68021777 + B4 SINE B4 10 213 -79 4 1570 452 18 18 0 chr1 129174097 129174154 -68021278 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1570 608 255 78 0 chr1 129174320 129174473 -68020959 + ID_B1 SINE B4 57 221 -3 4 1570 1142 209 5 9 chr1 129174474 129174687 -68020745 + B3 SINE B2 1 212 -4 4 1570 592 115 9 9 chr1 129175271 129175376 -68020056 + (GA)n Simple_repeat Simple_repeat 1 105 0 4 1570 1265 226 133 9 chr1 129175525 129175847 -68019585 + MTD LTR MaLR 57 418 -1 4 1570 815 246 63 16 chr1 129176606 129176796 -68018636 - ID_B1 SINE B4 -23 201 3 4 1570 587 230 35 106 chr1 129176954 129177153 -68018279 - B3A SINE B2 -13 185 1 4 1570 1408 227 53 115 chr1 129177611 129178010 -68017422 - MTE2a LTR MaLR 0 379 6 4 1570 3275 21 45 0 chr1 129178076 129178455 -68016977 - MTA_Mm LTR MaLR 0 396 1 4 1570 5619 47 6 3 chr1 129178455 129179175 -68016257 - MTA_Mm-int LTR MaLR 0 1098 377 4 1570 225 0 0 0 chr1 129179176 129179201 -68016231 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1570 3339 18 0 0 chr1 129179707 129180098 -68015334 - MTA_Mm-int LTR MaLR -707 391 1 4 1570 3324 21 39 0 chr1 129180098 129180479 -68014953 - MTA_Mm LTR MaLR 0 396 1 4 1570 396 250 14 14 chr1 129180507 129180645 -68014787 + (TA)n Simple_repeat Simple_repeat 2 139 0 4 1570 606 287 115 30 chr1 129180826 129181095 -68014337 + B4 SINE B4 1 292 0 4 1570 342 0 0 0 chr1 129181110 129181148 -68014284 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1570 333 0 0 0 chr1 129181148 129181185 -68014247 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1570 738 271 7 0 chr1 129181195 129181350 -68014082 + B3A SINE B2 26 181 -17 4 1570 421 238 0 0 chr1 129181822 129181902 -68013530 + ID4_ SINE ID 1 80 -3 4 1570 590 308 0 87 chr1 129182246 129182431 -68013001 - B4A SINE B4 -118 174 6 4 1570 319 311 107 0 chr1 129182647 129182750 -68012682 + LTR41 LTR ERVL 67 180 -588 4 1570 405 0 0 0 chr1 129182833 129182878 -68012554 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1570 279 383 50 27 chr1 129183505 129183725 -68011707 + LTR41 LTR ERVL 498 722 -46 4 1570 909 195 9 87 chr1 129183726 129183945 -68011487 + B3 SINE B2 2 203 -13 5 1570 21 89 0 0 chr1 129183979 129184035 -68011397 + AT_rich Low_complexity Low_complexity 1 56 0 5 1570 1117 68 0 39 chr1 129184035 129184188 -68011244 - B1_Mus2 SINE Alu 0 147 1 5 1570 663 238 87 16 chr1 129184266 129184450 -68010982 + B3A SINE B2 2 198 0 5 1570 1305 144 39 0 chr1 129184543 129184751 -68010681 + URR1B DNA MER1_type 8 223 -2 5 1570 780 221 20 10 chr1 129185379 129185567 -68009865 - B3 SINE B2 -1 194 1 5 1570 378 0 0 0 chr1 129185678 129185720 -68009712 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1570 396 262 54 65 chr1 129185949 129186133 -68009299 + B3A SINE B2 1 182 -16 5 1570 787 293 26 17 chr1 129186179 129186412 -68009020 - Tigger7 DNA MER2_type -2078 413 179 5 1570 366 80 0 0 chr1 129186693 129186743 -68008689 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1570 201 254 0 0 chr1 129186768 129186839 -68008593 + (TATG)n Simple_repeat Simple_repeat 4 74 0 5 1570 949 331 14 56 chr1 129186852 129187151 -68008281 - B4A SINE B4 -2 290 2 5 1570 884 249 34 48 chr1 129187785 129187992 -68007440 - B4A SINE B4 -88 204 1 5 1570 332 233 0 0 chr1 129188890 129188950 -68006482 + PB1D7 SINE Alu 53 112 -8 5 1570 255 61 0 0 chr1 129188950 129188983 -68006449 + (CTAA)n Simple_repeat Simple_repeat 3 35 0 5 1570 471 359 166 5 chr1 129189077 129189276 -68006156 - B4A SINE B4 -60 232 2 5 1570 903 291 52 43 chr1 129190243 129190563 -68004869 - ORR1E LTR MaLR -6 353 34 5 1570 448 325 90 26 chr1 129190692 129190722 -68004710 - RSINE1 SINE B4 0 165 138 5 1570 210 91 0 0 chr1 129190722 129190755 -68004677 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1570 448 325 90 26 chr1 129190755 129190879 -68004553 - RSINE1 SINE B4 -28 137 1 5 1570 340 314 129 55 chr1 129190879 129191081 -68004351 - ID_B1 SINE B4 -6 218 2 5 1570 463 278 154 88 chr1 129191285 129191648 -68003784 + Charlie21a DNA MER1_type 345 731 -482 5 1570 566 319 46 62 chr1 129191730 129191844 -68003588 + B4 SINE B4 100 222 -70 5 1570 309 109 0 0 chr1 129191844 129191890 -68003542 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 5 1570 1149 60 18 0 chr1 129191892 129192059 -68003373 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 5 1570 566 319 46 62 chr1 129192059 129192135 -68003297 + B4 SINE B4 223 287 -5 5 1570 315 49 0 0 chr1 129192584 129192625 -68002807 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1570 960 269 62 23 chr1 129192847 129193106 -68002326 + B4A SINE B4 24 292 0 5 1570 204 40 0 0 chr1 129193786 129193811 -68001621 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1570 1049 254 22 15 chr1 129193847 129194119 -68001313 - B4A SINE B4 -18 274 1 5 1570 1392 145 0 13 chr1 129194139 129194363 -68001069 + URR1B DNA MER1_type 1 221 -4 5 1570 220 317 61 0 chr1 129194574 129194656 -68000776 + MER5A DNA MER1_type 75 161 -28 5 1570 501 17 0 0 chr1 129195800 129195858 -67999574 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1570 367 283 22 0 chr1 129195858 129195950 -67999482 - RMER15 LTR ERVL -111 464 371 5 1570 230 358 0 0 chr1 129195950 129196031 -67999401 - Lx8 LINE L1 -240 7233 7153 5 1570 227 275 0 158 chr1 129196201 129196283 -67999149 + B3A SINE B2 124 192 -6 5 1570 311 239 0 15 chr1 129196414 129196482 -67998950 - Lx8 LINE L1 -250 7223 7157 5 1570 318 346 10 10 chr1 129196536 129196638 -67998794 - Lx8 LINE L1 -250 7223 7122 5 1570 303 322 44 11 chr1 129197346 129197437 -67997995 + Charlie12 DNA MER1_type 1 94 -2779 5 1570 755 168 53 8 chr1 129197469 129197601 -67997831 - B1_Mur4 SINE Alu -11 139 2 5 1570 281 259 70 26 chr1 129197603 129197629 -67997803 - RMER30 DNA MER1_type -77 125 100 5 1570 441 0 0 0 chr1 129197629 129197678 -67997754 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1570 281 259 70 26 chr1 129197678 129197766 -67997666 - RMER30 DNA MER1_type -103 99 6 5 1570 567 228 48 24 chr1 129198163 129198289 -67997143 - RSINE1 SINE B4 -36 129 1 5 1570 468 324 171 32 chr1 129198628 129198874 -67996558 - RSINE1 SINE B4 -2 290 11 5 1570 640 275 79 10 chr1 129198894 129199096 -67996336 - B4A SINE B4 -73 219 4 5 1570 696 284 190 5 chr1 129200381 129200597 -67994835 - MTE2b LTR MaLR -93 286 31 5 1570 204 163 0 0 chr1 129200769 129200812 -67994620 + CT-rich Low_complexity Low_complexity 4 46 0 5 1570 213 261 130 0 chr1 129201258 129201350 -67994082 + L2b LINE L2 3259 3362 -13 5 1570 424 227 0 22 chr1 129201471 129201561 -67993871 - B3 SINE B2 -10 206 119 5 1570 267 122 0 0 chr1 129201595 129201644 -67993788 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 5 1570 400 288 76 70 chr1 129201724 129201896 -67993536 - B4A SINE B4 -52 240 68 5 1570 437 231 353 0 chr1 129201995 129202151 -67993281 - ID_B1 SINE B4 -12 212 2 5 1570 324 0 0 0 chr1 129202814 129202850 -67992582 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1570 599 320 65 72 chr1 129203732 129204025 -67991407 - B4 SINE B4 0 292 2 5 1570 498 280 8 0 chr1 129204456 129204581 -67990851 + ID_B1 SINE B4 84 209 -15 5 1570 372 22 0 0 chr1 129204581 129204626 -67990806 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1570 559 246 74 14 chr1 129204859 129205007 -67990425 - RSINE1 SINE B4 -6 159 3 5 1570 489 179 0 0 chr1 129205509 129205593 -67989839 + B4A SINE B4 8 91 -201 5 1570 351 0 0 0 chr1 129206046 129206085 -67989347 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1570 794 232 105 81 chr1 129206122 129206370 -67989062 + B4 SINE B4 39 292 0 5 1570 342 0 0 0 chr1 129206379 129206417 -67989015 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1570 575 218 105 146 chr1 129206650 129206897 -67988535 - MTD LTR MaLR -15 404 168 5 1570 430 214 30 20 chr1 129207257 129207357 -67988075 + ID_B1 SINE B4 113 213 -11 5 1570 393 297 0 29 chr1 129207832 129207936 -67987496 + MER58A DNA MER1_type 1 101 -123 5 1570 539 290 148 40 chr1 129209200 129209353 -67986079 + B3A SINE B2 1 177 -21 5 1570 522 114 0 0 chr1 129209353 129209432 -67986000 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1570 539 290 148 40 chr1 129209432 129209454 -67985978 + B3A SINE B2 178 195 -3 5 1570 279 0 0 0 chr1 129209766 129209797 -67985635 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1570 212 235 20 0 chr1 129209820 129209871 -67985561 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1570 467 266 58 33 chr1 129209871 129210068 -67985364 - Lx7 LINE L1 -1787 5909 5674 5 1570 429 20 0 0 chr1 129210962 129211012 -67984420 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1570 511 189 91 14 chr1 129211923 129212069 -67983363 - MTD LTR MaLR -13 406 219 5 1570 484 270 14 62 chr1 129212182 129212328 -67983104 + ID_B1 SINE B4 82 220 -4 5 1570 811 230 30 5 chr1 129212603 129212804 -67982628 - ID_B1 SINE B4 -17 207 2 5 1570 294 50 0 0 chr1 129212828 129212868 -67982564 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1570 369 0 0 0 chr1 129213152 129213193 -67982239 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1570 315 104 0 0 chr1 129213705 129213753 -67981679 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1570 259 279 48 16 chr1 129213766 129213828 -67981604 - RSINE1 SINE B4 -17 148 85 5 1570 244 294 0 14 chr1 129215046 129215115 -67980317 + CT-rich Low_complexity Low_complexity 1 68 0 5 1570 830 228 11 11 chr1 129215149 129215331 -67980101 - B3A SINE B2 -16 182 1 5 1570 399 287 138 50 chr1 129215762 129216059 -67979373 + Lx8 LINE L1 7151 7473 0 5 1570 806 248 101 24 chr1 129216068 129216275 -67979157 + ID_B1 SINE B4 2 224 0 5 1570 452 298 38 59 chr1 129216652 129216941 -67978491 - B4A SINE B4 -9 283 1 5 1570 592 268 63 58 chr1 129216941 129217131 -67978301 + RMER30 DNA MER1_type 8 198 -4 5 1570 254 310 51 8 chr1 129217693 129217810 -67977622 + ID_B1 SINE B4 81 202 -22 5 1570 336 285 96 38 chr1 129217825 129217982 -67977450 + L1MC3 LINE L1 6918 7083 -702 5 1570 302 200 213 0 chr1 129217993 129218068 -67977364 + ID_B1 SINE B4 134 224 0 5 1570 565 100 0 5 chr1 129218178 129218263 -67977169 - L1_Mus1 LINE L1 -440 6198 6117 5 1570 671 258 20 44 chr1 129218265 129218468 -67976964 + ID_B1 SINE B4 1 198 -26 5 1570 393 22 0 0 chr1 129219020 129219066 -67976366 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1570 602 241 230 9 chr1 129219088 129219318 -67976114 - B4A SINE B4 -10 282 2 5 1570 565 326 17 0 chr1 129219710 129219888 -67975544 + B3A SINE B2 2 182 -16 5 1570 904 256 13 20 chr1 129219993 129220282 -67975150 - ORR1D2 LTR MaLR 0 370 22 5 1570 354 23 0 0 chr1 129220353 129220396 -67975036 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 5 1570 750 191 15 0 chr1 129220400 129220531 -67974901 - B1_Mur4 SINE Alu -7 143 11 5 1570 307 264 43 123 chr1 129220428 129220566 -67974866 - MT2B LTR ERVL -337 264 138 5 1570 673 232 42 0 chr1 129220545 129220687 -67974745 - ID_B1 SINE B4 -75 149 2 5 1570 1279 226 86 32 chr1 129221159 129221515 -67973917 - MTEa LTR MaLR 0 359 22 5 1570 1601 212 18 44 chr1 129221625 129222009 -67973423 - ORR1D1 LTR MaLR 0 374 1 5 1570 423 68 0 0 chr1 129222722 129222781 -67972651 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1570 947 263 81 22 chr1 129223214 129223486 -67971946 + B4 SINE B4 1 288 -4 5 1570 326 277 7 0 chr1 129223495 129223636 -67971796 + (CA)n Simple_repeat Simple_repeat 1 142 0 5 1570 261 119 0 0 chr1 129223647 129223689 -67971743 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1570 1323 250 72 41 chr1 129224307 129224670 -67970762 - MTEa LTR MaLR 0 379 6 6 1570 338 210 48 36 chr1 129225484 129225568 -67969864 + B4 SINE B4 3 87 -205 6 1570 600 111 0 0 chr1 129225577 129225667 -67969765 + (GGGA)n Simple_repeat Simple_repeat 3 92 0 6 1570 298 319 76 98 chr1 129225670 129225802 -67969630 + B4 SINE B4 71 199 -93 6 1570 556 232 287 26 chr1 129225816 129226046 -67969386 + B4A SINE B4 2 291 -1 6 1570 546 312 58 14 chr1 129226491 129226699 -67968733 + MER20 DNA MER1_type 1 217 -2 6 1570 210 143 0 0 chr1 129226938 129226973 -67968459 + (CCA)n Simple_repeat Simple_repeat 1 35 0 6 1570 767 247 80 32 chr1 129226976 129227164 -67968268 + B3A SINE B2 1 197 -1 6 1570 609 266 25 45 chr1 129227911 129228112 -67967320 + ID_B1 SINE B4 3 199 -25 6 1570 1122 215 132 19 chr1 129228120 129228385 -67967047 - MTD LTR MaLR -14 405 111 6 1570 266 128 128 0 chr1 129228537 129228584 -67966848 - MTD LTR MaLR -299 120 68 6 1570 906 116 0 0 chr1 129228585 129228723 -67966709 + (TC)n Simple_repeat Simple_repeat 1 138 0 6 1570 2673 191 65 41 chr1 129228725 129229340 -67966092 - MYSERV16_I-int LTR ERVK -1488 838 209 6 1570 4095 112 11 115 chr1 129229342 129229537 -67965895 - RLTR22_Mur LTR ERVK -1137 711 544 6 1570 1104 43 42 7 chr1 129229537 129229679 -67965753 - B1_Mm SINE Alu 0 147 1 6 1570 4095 112 11 115 chr1 129229679 129230276 -67965156 - RLTR22_Mur LTR ERVK -1305 543 1 6 1570 9169 83 19 8 chr1 129230276 129232236 -67963196 - L1VL4 LINE L1 -1386 2173 188 6 1570 610 272 10 49 chr1 129232359 129232529 -67962903 + B3A SINE B2 1 168 -30 6 1570 306 0 0 0 chr1 129232529 129232563 -67962869 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1570 610 272 10 49 chr1 129232563 129232597 -67962835 + B3A SINE B2 169 197 -1 6 1570 407 332 68 53 chr1 129232619 129232883 -67962549 + Lx8 LINE L1 7159 7426 -47 6 1570 360 64 0 0 chr1 129232884 129232931 -67962501 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1570 396 281 90 13 chr1 129233330 129233485 -67961947 + MIR SINE MIR 17 183 -79 6 1570 1654 183 64 9 chr1 129233499 129233825 -67961607 - MTEa LTR MaLR -5 374 31 6 1570 453 219 46 37 chr1 129234233 129234342 -67961090 - PB1D10 SINE Alu -2 115 6 6 1570 677 267 25 0 chr1 129234261 129234422 -67961010 - ID_B1 SINE B4 -56 168 4 6 1570 278 269 26 0 chr1 129234912 129234990 -67960442 - ID4 SINE ID 0 83 4 6 1570 306 0 0 0 chr1 129235001 129235035 -67960397 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1570 184 288 0 48 chr1 129235710 129235772 -67959660 + MIRc SINE MIR 139 197 -71 6 1570 203 282 151 16 chr1 129236300 129236426 -67959006 - L2a LINE L2 -233 3193 3051 6 1570 1307 259 70 14 chr1 129236536 129236892 -67958540 + MTEb LTR MaLR 4 379 0 6 1571 597 305 6 18 chr1 129237352 129237519 -67957913 + MER58A DNA MER1_type 60 224 0 6 1571 969 228 14 14 chr1 129237984 129238206 -67957226 + ID_B1 SINE B4 1 222 -2 6 1571 315 320 19 19 chr1 129238305 129238410 -67957022 - Tigger5 DNA MER2_type -1 2405 2301 6 1571 657 291 34 29 chr1 129238416 129238621 -67956811 - Tigger5 DNA MER2_type -2164 242 37 6 1571 314 139 0 0 chr1 129238634 129238677 -67956755 + ID4_ SINE ID 6 48 -35 6 1571 192 40 0 0 chr1 129238765 129238790 -67956642 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1571 21 0 0 0 chr1 129239158 129239179 -67956253 + AT_rich Low_complexity Low_complexity 1 21 0 6 1571 269 295 28 83 chr1 129239325 129239506 -67955926 - HAL1 LINE L1 -1 2506 2336 6 1571 478 266 36 9 chr1 129239761 129239871 -67955561 - ID_B1 SINE B4 -88 136 24 6 1571 324 260 96 0 chr1 129239811 129239884 -67955548 - ID4_ SINE ID -1 82 3 6 1571 915 173 113 52 chr1 129240099 129240312 -67955120 - URR1A DNA MER1_type 0 226 1 6 1571 1048 240 114 51 chr1 129240887 129241083 -67954349 - MTEa LTR MaLR -5 374 155 6 1571 234 0 0 0 chr1 129241083 129241109 -67954323 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1571 1048 240 114 51 chr1 129241109 129241246 -67954186 - MTEa LTR MaLR -225 154 21 6 1571 192 152 0 0 chr1 129242497 129242530 -67952902 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1571 1017 274 63 0 chr1 129242559 129242829 -67952603 - B4A SINE B4 -2 290 4 6 1571 249 33 0 0 chr1 129243039 129243069 -67952363 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1571 849 290 85 4 chr1 129243888 129244158 -67951274 - B4 SINE B4 0 292 1 6 1571 339 25 0 0 chr1 129244301 129244341 -67951091 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1571 1886 210 24 5 chr1 129244343 129244712 -67950720 - MTEa LTR MaLR -3 376 1 6 1571 853 238 0 12 chr1 129246579 129246741 -67948691 + RSINE1 SINE B4 4 163 -2 6 1571 785 226 119 16 chr1 129247544 129247737 -67947695 - MTEb LTR MaLR -4 375 163 6 1571 683 185 8 0 chr1 129247771 129247890 -67947542 - B1_Mus1 SINE Alu -23 125 6 6 1571 763 250 32 5 chr1 129247895 129248080 -67947352 - MTEb LTR MaLR -188 191 2 6 1571 774 299 133 15 chr1 129248378 129248717 -67946715 - MTEa LTR MaLR 0 379 1 6 1571 799 288 45 77 chr1 129249369 129249813 -67945619 - L1ME2 LINE L1 -39 6125 5696 6 1571 377 294 80 18 chr1 129249871 129250034 -67945398 - L1ME2 LINE L1 -2799 3347 3175 6 1571 592 267 40 58 chr1 129250035 129250258 -67945174 - MLT2F LTR ERVL 0 663 445 6 1571 455 212 40 47 chr1 129250260 129250379 -67945053 + B4 SINE B4 4 112 -53 6 1571 303 262 12 24 chr1 129250418 129250500 -67944932 + Lx8 LINE L1 6953 7033 -440 6 1571 320 148 16 0 chr1 129250500 129250561 -67944871 + GA-rich Low_complexity Low_complexity 2 63 0 6 1571 258 253 53 117 chr1 129250833 129250927 -67944505 + B4A SINE B4 200 287 -5 6 1571 270 0 0 0 chr1 129251046 129251076 -67944356 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1571 329 333 83 52 chr1 129251127 129251320 -67944112 - MER58A DNA MER1_type -23 201 3 6 1571 911 158 14 0 chr1 129251370 129251516 -67943916 + B1_Mus1 SINE Alu 1 148 0 6 1571 399 216 44 22 chr1 129251540 129251630 -67943802 + B3 SINE B2 1 92 -124 6 1571 507 231 153 112 chr1 129251693 129251942 -67943490 + MTE2a LTR MaLR 121 379 0 6 1571 400 271 102 0 chr1 129251965 129252083 -67943349 + Tigger7 DNA MER2_type 2 131 -2360 6 1571 955 100 8 0 chr1 129252076 129252206 -67943226 - B1_Mur4 SINE Alu -2 148 18 6 1571 735 276 188 12 chr1 129252217 129252558 -67942874 + Tigger7 DNA MER2_type 76 476 -2015 6 1571 655 228 30 55 chr1 129252567 129252767 -67942665 + B3A SINE B2 2 196 -2 6 1571 661 248 0 27 chr1 129252784 129252933 -67942499 - B1_Mur1 SINE Alu -4 145 1 6 1571 523 253 135 10 chr1 129252974 129253166 -67942266 + Tigger7 DNA MER2_type 2266 2481 -10 6 1571 400 215 8 101 chr1 129253368 129253487 -67941945 + MT2B LTR ERVL 169 276 -325 6 1571 818 178 0 0 chr1 129253384 129253513 -67941919 + B1_Mus1 SINE Alu 19 147 -1 6 1571 264 284 0 13 chr1 129253523 129253598 -67941834 + B1_Mur2 SINE Alu 74 147 -2 6 1571 711 298 39 99 chr1 129253705 129253988 -67941444 - B4A SINE B4 0 292 27 6 1571 374 285 80 54 chr1 129254015 129254439 -67940993 - L1MEc LINE L1 -4641 2396 1913 6 1571 839 305 38 71 chr1 129254442 129254862 -67940570 - MTE2a LTR MaLR -14 405 1 6 1571 233 269 21 11 chr1 129254962 129255056 -67940376 - L1MEc LINE L1 -5119 1812 1718 6 1571 325 314 167 11 chr1 129255111 129255285 -67940147 - L1MEc LINE L1 -4889 1534 1334 6 1571 445 257 17 68 chr1 129255303 129255420 -67940012 - RSINE1 SINE B4 -51 114 4 6 1571 622 118 78 10 chr1 129255443 129255546 -67939886 - B1_Mur2 SINE Alu 0 149 40 6 1571 252 185 44 110 chr1 129255484 129255575 -67939857 - RLTR25B LTR ERVK -530 498 414 6 1571 688 236 136 72 chr1 129256882 129257133 -67938299 + ORR1E LTR MaLR 5 271 -88 6 1571 520 301 45 7 chr1 129257113 129257267 -67938165 - ID_B1 SINE B4 -32 192 33 6 1571 699 271 34 51 chr1 129257973 129258265 -67937167 - B4A SINE B4 -5 287 1 6 1571 244 133 156 0 chr1 129258532 129258577 -67936855 + B4A SINE B4 4 55 -237 6 1571 342 264 91 36 chr1 129258591 129258792 -67936640 + B4 SINE B4 78 273 -19 6 1571 772 210 202 157 chr1 129259582 129259678 -67935754 + MTD LTR MaLR 1 98 -321 6 1571 1228 34 7 0 chr1 129259678 129259824 -67935608 + B1_Mus2 SINE Alu 1 147 0 6 1571 772 210 202 157 chr1 129259824 129260128 -67935304 + MTD LTR MaLR 99 419 0 6 1571 1032 268 71 39 chr1 129260817 129261100 -67934332 + B4 SINE B4 1 292 0 6 1571 2032 123 123 0 chr1 129261208 129261533 -67933899 - ORR1B2 LTR MaLR -1 366 2 6 1571 224 318 33 33 chr1 129262183 129262208 -67933224 - ID_B1 SINE B4 -131 93 3 6 1571 237 242 30 0 chr1 129262208 129262274 -67933158 - ID4 SINE ID -13 70 3 6 1571 463 216 103 0 chr1 129262302 129262418 -67933014 - B4 SINE B4 -2 290 163 6 1571 643 238 73 0 chr1 129263337 129263488 -67931944 - RSINE1 SINE B4 -1 164 3 6 1571 294 297 36 9 chr1 129263643 129263755 -67931677 - L1M3 LINE L1 -653 5518 5404 6 1571 756 74 231 0 chr1 129264878 129264999 -67930433 + B1_Mur4 SINE Alu 2 150 0 6 1571 923 288 89 9 chr1 129265125 129265472 -67929960 + MTE2b LTR MaLR 1 375 -4 6 1571 826 281 52 60 chr1 129266017 129266267 -67929165 - B4A SINE B4 -44 248 1 6 1571 537 250 0 0 chr1 129266591 129266695 -67928737 + B3A SINE B2 25 128 -70 6 1571 387 0 0 0 chr1 129266710 129266753 -67928679 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1571 234 0 0 0 chr1 129266753 129266778 -67928654 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1571 1453 231 126 8 chr1 129267395 129267783 -67927649 - Lx8 LINE L1 -327 7146 6713 6 1571 240 208 11 200 chr1 129269235 129269325 -67926107 - B4 SINE B4 0 292 220 6 1571 537 314 97 30 chr1 129269391 129269660 -67925772 - B4A SINE B4 -4 288 2 6 1571 943 212 77 10 chr1 129269672 129269881 -67925551 - B4 SINE B4 -67 225 3 6 1571 321 118 0 0 chr1 129270022 129270073 -67925359 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1571 423 0 0 0 chr1 129271003 129271050 -67924382 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1571 387 0 0 0 chr1 129271050 129271092 -67924340 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1571 295 247 11 110 chr1 129271179 129271270 -67924162 - RSINE1 SINE B4 0 165 84 7 1571 681 195 129 55 chr1 129271490 129271691 -67923741 - ID_B1 SINE B4 -8 216 1 7 1571 200 311 0 16 chr1 129272039 129272101 -67923331 + C-rich Low_complexity Low_complexity 4 64 0 7 1571 1476 185 111 71 chr1 129272167 129272592 -67922840 + RMER10A LTR ERVL 1 442 0 7 1571 264 122 0 0 chr1 129272998 129273039 -67922393 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1571 287 293 76 55 chr1 129273928 129274104 -67921328 + Tigger7 DNA MER2_type 6 197 -142 7 1571 416 272 40 0 chr1 129274104 129274229 -67921203 - MTEa LTR MaLR 0 379 250 7 1571 39 38 0 0 chr1 129274239 129274292 -67921140 + AT_rich Low_complexity Low_complexity 1 53 0 7 1571 657 243 36 0 chr1 129274566 129274706 -67920726 - B1_Mm SINE Alu 0 147 3 7 1571 619 283 94 40 chr1 129275434 129275710 -67919722 - B4A SINE B4 0 292 2 7 1571 476 321 98 0 chr1 129276819 129277043 -67918389 + B4A SINE B4 1 246 -46 7 1571 519 60 0 0 chr1 129277045 129277112 -67918320 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1571 229 286 0 14 chr1 129277158 129277229 -67918203 + (CATA)n Simple_repeat Simple_repeat 3 72 0 7 1571 243 0 0 0 chr1 129277319 129277346 -67918086 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1571 622 224 75 101 chr1 129278239 129278438 -67916994 - B3A SINE B2 -1 194 1 7 1571 21 71 0 0 chr1 129278478 129278520 -67916912 + AT_rich Low_complexity Low_complexity 1 42 0 7 1571 394 305 21 0 chr1 129278596 129278691 -67916741 - RMER30 DNA MER1_type -1 201 105 7 1571 216 0 0 0 chr1 129278693 129278717 -67916715 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1571 514 234 79 16 chr1 129278827 129278953 -67916479 - ID_B1 SINE B4 0 224 91 7 1571 191 333 74 21 chr1 129279851 129279946 -67915486 - L2c LINE L2 -183 3204 3105 7 1571 486 288 180 6 chr1 129280154 129280332 -67915100 - B3 SINE B2 -2 214 6 7 1571 902 222 11 5 chr1 129280373 129280432 -67915000 + ID SINE ID 24 83 -141 7 1571 533 234 49 35 chr1 129280432 129280574 -67914858 + B1F SINE Alu 3 146 -3 7 1571 420 239 0 42 chr1 129280574 129280670 -67914762 + RSINE1 SINE B4 3 94 -71 7 1571 688 242 6 30 chr1 129281040 129281206 -67914226 - RSINE1 SINE B4 -2 163 2 7 1571 414 0 0 0 chr1 129281750 129281796 -67913636 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1571 629 159 83 53 chr1 129281931 129282053 -67913379 + B1_Mus1 SINE Alu 9 135 -13 7 1571 273 29 0 0 chr1 129282053 129282087 -67913345 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 7 1571 680 225 132 16 chr1 129282292 129282505 -67912927 + Lx7 LINE L1 7295 7692 -4 7 1571 231 103 0 0 chr1 129282845 129282884 -67912548 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1571 408 331 19 35 chr1 129282977 129283213 -67912219 + L1MC5 LINE L1 6670 6984 -1058 7 1571 468 281 144 0 chr1 129283339 129283492 -67911940 + B4 SINE B4 2 176 -116 7 1571 315 319 132 42 chr1 129283438 129283605 -67911827 - B4 SINE B4 -97 195 14 7 1571 183 152 30 0 chr1 129284907 129284940 -67910492 - L2 LINE L2 -2625 794 761 7 1571 207 69 0 0 chr1 129284951 129284980 -67910452 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1571 806 227 29 24 chr1 129284988 129285196 -67910236 - ID_B1 SINE B4 -12 212 4 7 1571 399 216 71 10 chr1 129285302 129285400 -67910032 - RSINE1 SINE B4 -8 157 54 7 1571 912 226 109 15 chr1 129286528 129286802 -67908630 - RMER15 LTR ERVL -1 574 275 7 1571 261 269 73 46 chr1 129286876 129286985 -67908447 - RMER15 LTR ERVL -463 112 1 7 1571 189 167 96 77 chr1 129287421 129287473 -67907959 + L3 LINE CR1 3219 3271 -1218 7 1571 780 202 0 0 chr1 129287677 129287801 -67907631 + B1_Mur2 SINE Alu 1 124 -25 7 1571 396 71 0 0 chr1 129287880 129287936 -67907496 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1571 343 280 29 26 chr1 129287940 129288080 -67907352 - RSINE1 SINE B4 -11 281 75 7 1571 288 309 39 49 chr1 129288070 129288172 -67907260 - ID_B1 SINE B4 -123 101 1 7 1571 884 284 112 63 chr1 129288227 129288576 -67906856 - MTEb LTR MaLR -13 366 1 7 1571 215 209 58 58 chr1 129289066 129289239 -67906193 + (ACTG)n Simple_repeat Simple_repeat 2 174 0 7 1571 830 228 82 11 chr1 129289686 129289868 -67905564 - B4 SINE B4 0 292 98 7 1571 642 270 87 0 chr1 129290514 129290710 -67904722 + ID_B1 SINE B4 5 217 -7 7 1571 934 287 76 11 chr1 129290735 129290999 -67904433 + B4A SINE B4 10 290 -2 7 1571 251 204 0 0 chr1 129291650 129291699 -67903733 - ID_B1 SINE B4 -55 169 121 7 1571 350 352 20 85 chr1 129292443 129292642 -67902790 - MER58B DNA MER1_type -16 325 140 7 1571 1079 275 3 60 chr1 129292689 129292991 -67902441 + B4 SINE B4 8 292 0 7 1571 269 336 83 8 chr1 129293231 129293363 -67902069 - MLT1A0 LTR MaLR -6 359 218 7 1571 232 351 0 0 chr1 129293861 129293938 -67901494 + ID4 SINE ID 3 79 -4 7 1571 1096 107 7 0 chr1 129294636 129294785 -67900647 - B1_Mur4 SINE Alu 0 150 1 7 1571 213 196 278 52 chr1 129294819 129294916 -67900516 + B4 SINE B4 2 120 -172 7 1571 207 186 0 23 chr1 129294916 129294960 -67900472 + C-rich Low_complexity Low_complexity 4 46 0 7 1571 355 328 23 15 chr1 129294973 129295106 -67900326 + B4A SINE B4 159 292 0 7 1571 21 0 0 0 chr1 129295366 129295387 -67900045 + AT_rich Low_complexity Low_complexity 1 21 0 7 1571 613 286 69 12 chr1 129296424 129296597 -67898835 + B4 SINE B4 2 184 -108 7 1571 453 36 0 0 chr1 129296665 129296720 -67898712 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1571 213 182 0 0 chr1 129296731 129296786 -67898646 + GA-rich Low_complexity Low_complexity 2 56 0 7 1571 990 244 54 77 chr1 129297628 129297926 -67897506 + B4 SINE B4 2 292 0 7 1571 991 217 32 9 chr1 129298268 129298487 -67896945 + ID_B1 SINE B4 1 224 0 7 1571 358 278 60 40 chr1 129298534 129298684 -67896748 + L1MC5 LINE L1 6963 7115 -846 7 1571 572 157 0 0 chr1 129299142 129299231 -67896201 - ID_B1 SINE B4 -3 221 133 7 1571 412 263 17 17 chr1 129299218 129299334 -67896098 + MTE2a LTR MaLR 260 375 -4 7 1571 438 20 0 0 chr1 129299434 129299485 -67895947 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1571 234 0 0 0 chr1 129299516 129299542 -67895890 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1571 773 134 29 29 chr1 129299542 129299671 -67895761 - B1_Mus1 SINE Alu -9 139 10 7 1571 207 0 0 0 chr1 129300101 129300124 -67895308 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 7 1571 537 234 186 0 chr1 129301127 129301315 -67894117 + ID_B1 SINE B4 2 224 0 7 1571 1019 209 57 19 chr1 129301986 129302196 -67893236 + B4 SINE B4 2 219 -73 7 1571 291 179 52 164 chr1 129302077 129302211 -67893221 + PB1 SINE Alu 9 127 0 7 1571 191 36 0 35 chr1 129302217 129302246 -67893186 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1571 879 229 24 5 chr1 129302250 129302461 -67892971 + B3 SINE B2 2 216 0 7 1571 31 0 0 0 chr1 129302461 129302492 -67892940 + AT_rich Low_complexity Low_complexity 1 31 0 7 1571 186 40 0 0 chr1 129302586 129302599 -67892833 + (TG)n Simple_repeat Simple_repeat 2 14 0 7 1571 699 62 0 0 chr1 129302599 129302696 -67892736 + (GA)n Simple_repeat Simple_repeat 1 97 0 7 1571 186 40 0 0 chr1 129302696 129302707 -67892725 + (TG)n Simple_repeat Simple_repeat 1 11 0 7 1571 1169 167 32 9 chr1 129303227 129303444 -67891988 + ID_B1 SINE B4 1 222 -2 7 1571 1210 214 79 113 chr1 129303766 129304145 -67891287 - MTEa LTR MaLR -13 366 1 7 1571 722 174 89 14 chr1 129304426 129304572 -67890860 - B3A SINE B2 -35 163 7 7 1571 702 280 47 33 chr1 129305034 129305248 -67890184 + ID_B1 SINE B4 8 224 0 7 1571 183 100 0 0 chr1 129305889 129305919 -67889513 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 7 1571 488 262 49 7 chr1 129306099 129306241 -67889191 + B4A SINE B4 65 212 -80 7 1571 561 289 103 9 chr1 129306265 129306436 -67888996 + B3A SINE B2 1 187 -8 7 1571 272 254 84 56 chr1 129306424 129306495 -67888937 + B4A SINE B4 210 282 -10 7 1571 270 0 0 0 chr1 129306527 129306557 -67888875 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1571 333 0 0 0 chr1 129306557 129306593 -67888839 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1571 812 242 99 33 chr1 129307003 129307276 -67888156 + B4 SINE B4 2 292 0 7 1571 993 112 0 0 chr1 129307611 129307745 -67887687 + B1_Mur4 SINE Alu 2 135 -15 7 1571 414 0 0 0 chr1 129307902 129307948 -67887484 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1571 189 0 0 0 chr1 129307999 129308020 -67887412 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 7 1571 510 286 57 61 chr1 129308025 129308271 -67887161 - B4A SINE B4 -47 245 1 7 1571 343 167 30 0 chr1 129308324 129308390 -67887042 - B4A SINE B4 -61 231 164 7 1571 836 254 56 23 chr1 129309085 129309299 -67886133 + B4A SINE B4 2 222 -70 7 1571 383 269 46 17 chr1 129309687 129309861 -67885571 + (CATG)n Simple_repeat Simple_repeat 1 179 0 7 1571 651 258 6 66 chr1 129309882 129310048 -67885384 - RSINE1 SINE B4 -8 157 2 7 1571 543 314 50 50 chr1 129310126 129310344 -67885088 + MER20 DNA MER1_type 2 219 0 7 1571 615 278 97 20 chr1 129310557 129310752 -67884680 + ORR1E LTR MaLR 12 221 -138 7 1571 280 320 0 13 chr1 129310777 129310853 -67884579 - PB1D7 SINE Alu -27 93 19 7 1571 275 220 0 48 chr1 129310893 129310955 -67884477 - PB1 SINE Alu -4 123 65 8 1571 230 250 146 11 chr1 129310995 129311084 -67884348 + MIR SINE MIR 162 262 0 8 1571 319 297 142 21 chr1 129311262 129311403 -67884029 + MER58B DNA MER1_type 184 341 0 8 1571 233 98 24 0 chr1 129311488 129311529 -67883903 + (TCTCC)n Simple_repeat Simple_repeat 1 42 0 8 1571 803 265 91 20 chr1 129311583 129311837 -67883595 - B4 SINE B4 -16 276 5 8 1571 1019 226 183 38 chr1 129311992 129312309 -67883123 - MTD LTR MaLR 0 419 57 8 1571 832 286 14 14 chr1 129313064 129313273 -67882159 + B4A SINE B4 1 209 -83 8 1571 796 253 20 45 chr1 129313259 129313458 -67881974 - ID_B1 SINE B4 -20 204 11 8 1571 854 238 11 32 chr1 129314122 129314231 -67881201 - B3A SINE B2 -15 183 79 8 1571 2022 112 237 6 chr1 129314231 129314573 -67880859 + MTC LTR MaLR 1 421 0 8 1571 854 238 11 32 chr1 129314573 129314650 -67880782 - B3A SINE B2 -120 78 1 8 1571 204 67 0 0 chr1 129314675 129314705 -67880727 + (CAA)n Simple_repeat Simple_repeat 2 31 0 8 1571 620 256 8 0 chr1 129315009 129315130 -67880302 + RSINE1 SINE B4 13 134 -31 8 1571 632 270 168 6 chr1 129315185 129315364 -67880068 + B4 SINE B4 83 290 -2 8 1571 520 307 18 0 chr1 129316614 129316728 -67878704 + ID_B1 SINE B4 2 117 -107 8 1571 211 280 40 13 chr1 129316732 129316808 -67878624 + RSINE1 SINE B4 55 132 -33 8 1571 21 57 0 0 chr1 129316829 129316864 -67878568 + AT_rich Low_complexity Low_complexity 1 35 0 8 1571 204 40 0 0 chr1 129317462 129317487 -67877945 + (CG)n Simple_repeat Simple_repeat 2 26 0 8 1571 635 267 100 97 chr1 129317832 129318122 -67877310 + B4 SINE B4 1 291 -1 8 1571 296 241 0 0 chr1 129318333 129318391 -67877041 - Charlie12 DNA MER1_type -16 2857 2800 8 1571 253 294 129 0 chr1 129318461 129318546 -67876886 + RMER30 DNA MER1_type 76 171 -31 8 1571 189 0 0 0 chr1 129318818 129318839 -67876593 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 8 1571 234 191 0 0 chr1 129319010 129319057 -67876375 + (TATG)n Simple_repeat Simple_repeat 2 48 0 8 1571 804 224 75 20 chr1 129319600 129319800 -67875632 + B4 SINE B4 10 220 -72 8 1571 321 209 131 58 chr1 129320314 129320451 -67874981 + LTR41 LTR ERVL 3 149 -619 8 1571 708 12 0 0 chr1 129320504 129320585 -67874847 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 8 1571 303 330 124 16 chr1 129320769 129320963 -67874469 + B4 SINE B4 2 216 -76 8 1571 275 216 49 107 chr1 129322357 129322496 -67872936 - MTE2b LTR MaLR -16 392 274 8 1571 396 0 0 0 chr1 129323318 129323362 -67872070 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1571 450 0 0 0 chr1 129323362 129323412 -67872020 + (ATATG)n Simple_repeat Simple_repeat 2 51 0 8 1571 633 319 63 14 chr1 129323566 129323773 -67871659 + ID_B1 SINE B4 8 224 0 8 1571 200 241 0 36 chr1 129323773 129323829 -67871603 + G-rich Low_complexity Low_complexity 2 55 0 8 1571 248 204 20 0 chr1 129323984 129324033 -67871399 - ID4 SINE ID -32 51 2 8 1571 232 244 0 0 chr1 129323994 129324039 -67871393 - ZP3AR Satellite Satellite -130 82 38 8 1571 309 261 0 85 chr1 129324400 129324494 -67870938 + Cheshire DNA MER1_type 34 116 -2304 8 1571 1219 179 18 14 chr1 129324835 129325056 -67870376 + ID_B1 SINE B4 3 224 0 8 1571 200 86 29 0 chr1 129325056 129325091 -67870341 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 8 1571 225 0 0 0 chr1 129325226 129325251 -67870181 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1571 533 290 5 83 chr1 129325305 129325501 -67869931 - B3A SINE B2 -27 189 14 8 1571 260 254 84 38 chr1 129325627 129325758 -67869674 - L1MC5 LINE L1 -535 7426 7290 8 1571 448 271 17 0 chr1 129325855 129325973 -67869459 - RSINE1 SINE B4 -44 121 2 8 1571 189 211 0 0 chr1 129326133 129326185 -67869247 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1571 351 87 0 0 chr1 129326189 129326235 -67869197 - HAL1-3A_ME LINE L1 -838 2020 1975 8 1571 516 254 0 0 chr1 129326241 129326418 -67869014 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 1571 287 309 0 0 chr1 129326429 129326523 -67868909 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1571 719 231 65 126 chr1 129326526 129326773 -67868659 - B4 SINE B4 -60 232 1 8 1571 229 308 17 103 chr1 129327507 129327528 -67867904 + RMER12 LTR ERVK 750 769 -553 8 1571 360 94 0 0 chr1 129327528 129327581 -67867851 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1571 229 308 17 103 chr1 129327581 129327601 -67867831 + RMER12 LTR ERVK 770 789 -533 8 1571 3547 23 2 0 chr1 129327601 129327996 -67867436 - MTA_Mm LTR MaLR 0 396 1 8 1571 229 308 17 103 chr1 129327996 129328069 -67867363 + RMER12 LTR ERVK 790 855 -467 8 1571 1024 245 92 4 chr1 129328132 129328394 -67867038 + B4 SINE B4 8 292 0 8 1571 206 118 0 0 chr1 129329229 129329263 -67866169 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1571 657 226 88 82 chr1 129329607 129329937 -67865495 + RMER10A LTR ERVL 1 299 -143 8 1571 393 296 20 60 chr1 129330340 129330386 -67865046 - B1F SINE Alu -4 145 100 8 1571 272 25 50 0 chr1 129330386 129330426 -67865006 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1571 393 296 20 60 chr1 129330426 129330444 -67864988 - B1F SINE Alu -50 99 82 8 1571 951 194 13 242 chr1 129330444 129330973 -67864459 - RMER17C LTR ERVK 0 410 3 8 1571 393 296 20 60 chr1 129330973 129331058 -67864374 - B1F SINE Alu -68 81 2 8 1571 207 0 0 0 chr1 129331090 129331113 -67864319 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 8 1571 755 227 148 21 chr1 129331383 129331572 -67863860 - ID_B1 SINE B4 -5 219 7 8 1571 1293 101 6 16 chr1 129331702 129331884 -67863548 + B2_Mm2 SINE B2 2 181 -14 8 1571 583 135 42 59 chr1 129331890 129332008 -67863424 + RSINE1 SINE B4 12 127 -38 8 1571 405 0 0 0 chr1 129332012 129332057 -67863375 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1571 315 0 0 0 chr1 129332528 129332563 -67862869 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1571 388 313 67 0 chr1 129332579 129332729 -67862703 - B4A SINE B4 -36 256 97 8 1571 382 240 38 19 chr1 129332801 129332907 -67862525 - B4A SINE B4 -178 114 7 8 1571 255 125 0 0 chr1 129333004 129333044 -67862388 + (TTG)n Simple_repeat Simple_repeat 2 41 0 8 1571 380 276 153 8 chr1 129333074 129333198 -67862234 - RSINE1 SINE B4 -22 143 2 8 1571 240 59 0 0 chr1 129333544 129333578 -67861854 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1571 300 53 0 0 chr1 129333658 129333696 -67861736 + (TAA)n Simple_repeat Simple_repeat 2 39 0 8 1571 343 335 86 54 chr1 129334400 129334586 -67860846 - LTR78 LTR ERV1 -94 1210 1019 8 1571 440 278 18 9 chr1 129334818 129334927 -67860505 + B4A SINE B4 160 269 -23 8 1571 204 97 0 0 chr1 129334927 129334958 -67860474 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1571 486 0 0 0 chr1 129335684 129335738 -67859694 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1571 249 33 0 0 chr1 129335738 129335767 -67859665 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1571 339 282 144 26 chr1 129335829 129335982 -67859450 - B4A SINE B4 -118 174 4 8 1571 483 73 0 0 chr1 129336714 129336782 -67858650 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1571 908 242 109 25 chr1 129336782 129337066 -67858366 - RMER15 LTR ERVL -44 531 224 8 1571 217 311 27 13 chr1 129337127 129337202 -67858230 + ID_B1 SINE B4 64 139 -85 8 1571 450 207 75 61 chr1 129337481 129337646 -67857786 - MLT1A LTR MaLR -196 178 2 8 1571 855 297 13 13 chr1 129337996 129338228 -67857204 + B4 SINE B4 4 235 -57 8 1571 1049 246 73 31 chr1 129338691 129339018 -67856414 + ORR1E LTR MaLR 1 341 -18 8 1571 252 0 0 0 chr1 129339654 129339682 -67855750 + (CGGG)n Simple_repeat Simple_repeat 4 31 0 8 1571 270 316 142 70 chr1 129339975 129340319 -67855113 - RMER17C LTR ERVK -34 376 8 8 1571 251 264 68 14 chr1 129340348 129340369 -67855063 - ID SINE ID -145 79 7 8 1571 252 271 0 0 chr1 129340369 129340417 -67855015 - tRNA-Ala-GCY_ tRNA tRNA -27 48 1 8 1571 182 275 0 11 chr1 129340467 129340559 -67854873 + CT-rich Low_complexity Low_complexity 3 93 0 8 1571 330 26 0 0 chr1 129341026 129341065 -67854367 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1571 262 342 23 75 chr1 129342104 129342278 -67853154 - RLTR21 LTR ERVK -319 1253 1089 8 1571 662 325 25 5 chr1 129342431 129342632 -67852800 - B4A SINE B4 -2 290 86 8 1571 456 19 0 0 chr1 129343120 129343173 -67852259 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1571 26 30 0 0 chr1 129343207 129343240 -67852192 + AT_rich Low_complexity Low_complexity 1 33 0 8 1571 302 307 28 56 chr1 129343432 129343539 -67851893 + PB1D10 SINE Alu 1 104 -13 8 1571 406 133 22 0 chr1 129343664 129343754 -67851678 + (TA)n Simple_repeat Simple_repeat 1 92 0 8 1571 206 339 0 0 chr1 129344328 129344390 -67851042 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1571 873 185 134 4 chr1 129344448 129344683 -67850749 - B2_Mm2 SINE B2 -1 215 15 8 1571 1135 58 0 7 chr1 129344720 129344859 -67850573 - B1_Mus1 SINE Alu -9 139 2 8 1571 215 225 0 0 chr1 129344859 129344899 -67850533 - B2_Mm2 SINE B2 -153 42 3 8 1571 615 295 56 153 chr1 129344926 129345194 -67850238 - B4 SINE B4 -49 243 2 8 1571 499 296 139 70 chr1 129345399 129345657 -67849775 + B4A SINE B4 17 292 0 8 1571 794 144 12 146 chr1 129345695 129345866 -67849566 - B1_Mur3 SINE Alu 0 149 2 8 1571 432 268 0 93 chr1 129345898 129346038 -67849394 + RSINE1 SINE B4 2 128 -37 8 1571 279 122 0 0 chr1 129346707 129346756 -67848676 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1571 423 231 0 0 chr1 129346756 129346864 -67848568 + (TA)n Simple_repeat Simple_repeat 2 109 0 8 1571 710 284 66 0 chr1 129346895 129347092 -67848340 + B3 SINE B2 1 210 -6 8 1571 679 205 115 33 chr1 129347182 129347335 -67848097 + B3A SINE B2 2 165 -33 8 1571 441 0 0 0 chr1 129347335 129347384 -67848048 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1571 679 205 115 33 chr1 129347384 129347412 -67848020 + B3A SINE B2 166 198 0 8 1571 250 227 104 15 chr1 129347878 129347945 -67847487 - ID4_ SINE ID -8 75 3 9 1571 288 0 0 0 chr1 129348302 129348334 -67847098 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 9 1571 822 246 24 24 chr1 129348334 129348542 -67846890 - ID_B1 SINE B4 -12 212 5 9 1571 597 226 217 80 chr1 129348965 129349191 -67846241 - MTE2a LTR MaLR 0 379 123 9 1571 1251 228 62 80 chr1 129349341 129349727 -67845705 - MTE2a LTR MaLR 0 379 1 9 1571 624 245 37 68 chr1 129350382 129350544 -67844888 - MTE2a LTR MaLR 0 379 223 9 1571 437 214 116 93 chr1 129350544 129350673 -67844759 + MTEa LTR MaLR 2 133 -226 9 1571 536 223 43 68 chr1 129350766 129350960 -67844472 + MTEa LTR MaLR 170 379 0 9 1571 504 277 69 32 chr1 129350964 129351201 -67844231 - MTE2a LTR MaLR -162 217 1 9 1571 239 247 21 124 chr1 129351387 129351414 -67844018 + MT2B LTR ERVL 144 210 -391 9 1571 394 203 0 0 chr1 129351414 129351478 -67843954 + B1_Mur3 SINE Alu 6 69 -80 9 1571 3478 25 5 0 chr1 129351498 129351892 -67843540 - MTA_Mm LTR MaLR 0 396 1 9 1571 549 0 0 0 chr1 129351892 129351953 -67843479 + (GGGGA)n Simple_repeat Simple_repeat 3 63 0 9 1571 206 259 19 0 chr1 129352679 129352733 -67842699 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 9 1571 975 237 131 12 chr1 129352811 129353063 -67842369 + B4 SINE B4 10 291 -1 9 1571 515 298 188 8 chr1 129353539 129353779 -67841653 - B4A SINE B4 -8 284 2 9 1571 213 238 0 0 chr1 129354309 129354351 -67841081 + (TATG)n Simple_repeat Simple_repeat 1 42 0 9 1571 415 320 90 41 chr1 129354375 129354642 -67840790 - B4 SINE B4 -12 280 1 9 1571 518 287 180 24 chr1 129356645 129356895 -67838537 - B4A SINE B4 -3 289 1 9 1571 816 227 136 53 chr1 129357058 129357323 -67838109 + B4 SINE B4 2 288 -4 9 1571 612 158 53 0 chr1 129357342 129357513 -67837919 + GA-rich Low_complexity Low_complexity 1 180 0 9 1571 459 272 26 39 chr1 129358095 129358248 -67837184 - L1M3 LINE L1 -792 5348 5198 9 1571 985 262 60 21 chr1 129358283 129358359 -67837073 + B4 SINE B4 1 76 -216 9 1571 189 0 0 0 chr1 129358359 129358380 -67837052 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 9 1571 985 262 60 21 chr1 129358380 129358584 -67836848 + B4 SINE B4 77 291 -1 9 1571 958 232 25 10 chr1 129359099 129359299 -67836133 + ID_B1 SINE B4 3 205 -19 9 1571 921 120 207 52 chr1 129359635 129359828 -67835604 + URR1A DNA MER1_type 4 226 0 9 1571 831 212 34 15 chr1 129359836 129360042 -67835390 + B3 SINE B2 1 210 -6 9 1571 711 134 0 0 chr1 129360141 129360260 -67835172 + (TC)n Simple_repeat Simple_repeat 1 119 0 9 1571 216 143 0 0 chr1 129360259 129360301 -67835131 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1571 563 0 15 0 chr1 129361152 129361219 -67834213 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1571 636 268 128 31 chr1 129361327 129361585 -67833847 + B4 SINE B4 5 287 -5 9 1571 24 0 0 0 chr1 129361819 129361843 -67833589 + AT_rich Low_complexity Low_complexity 1 24 0 9 1571 291 28 0 0 chr1 129361921 129361957 -67833475 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1571 390 264 36 30 chr1 129362427 129362595 -67832837 + B4A SINE B4 124 292 0 9 1571 246 252 176 0 chr1 129362669 129362788 -67832644 - MER20B DNA MER1_type -64 719 580 9 1571 251 296 50 30 chr1 129362980 129363081 -67832351 - MER20B DNA MER1_type -316 467 365 9 1571 449 282 118 41 chr1 129363104 129363274 -67832158 + ID_B1 SINE B4 37 219 -5 9 1571 1194 83 6 0 chr1 129363282 129363438 -67831994 + B2_Mm1t SINE B2 1 157 -36 9 1571 225 0 0 0 chr1 129363443 129363468 -67831964 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 9 1571 357 124 0 29 chr1 129363498 129363610 -67831822 + B2_Mm2 SINE B2 47 191 -4 9 1571 635 294 30 32 chr1 129364033 129364257 -67831175 - ID_B1 SINE B4 0 224 1 9 1571 696 257 50 45 chr1 129364517 129364696 -67830736 + B3A SINE B2 3 182 -16 9 1571 290 340 39 10 chr1 129364869 129364973 -67830459 - PB1D9 SINE Alu -13 107 1 9 1571 1241 241 90 15 chr1 129365103 129365436 -67829996 - MTE2b LTR MaLR -18 361 4 9 1571 226 236 91 0 chr1 129365455 129365510 -67829922 + B2_Mm2 SINE B2 16 75 -120 9 1571 416 19 0 19 chr1 129365890 129365944 -67829488 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 9 1571 529 297 81 16 chr1 129366346 129366531 -67828901 - B4A SINE B4 -49 243 47 9 1571 965 269 32 0 chr1 129367289 129367505 -67827927 + ID_B1 SINE B4 2 224 0 9 1571 213 358 76 50 chr1 129367768 129368006 -67827426 - MIR SINE MIR -2 260 17 9 1572 180 0 0 0 chr1 129368167 129368187 -67827245 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1572 401 0 20 0 chr1 129368510 129368559 -67826873 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1572 1045 262 72 18 chr1 129368573 129368849 -67826583 + B4 SINE B4 1 291 -1 9 1572 895 289 68 10 chr1 129369514 129369801 -67825631 - B4 SINE B4 -1 291 2 9 1572 282 301 97 9 chr1 129369848 129369962 -67825470 + MIR SINE MIR 111 234 -28 9 1572 325 324 101 60 chr1 129370224 129370441 -67824991 + Tigger7 DNA MER2_type 2233 2458 -33 9 1572 1343 286 33 12 chr1 129370529 129370862 -67824570 - MTEa LTR MaLR -37 342 3 9 1572 331 241 165 0 chr1 129371042 129371121 -67824311 - B4 SINE B4 -160 132 41 9 1572 198 321 72 72 chr1 129371214 129371395 -67824037 + L2b LINE L2 3107 3287 -88 9 1572 228 86 0 0 chr1 129371552 129371587 -67823845 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1572 414 57 0 0 chr1 129371593 129371646 -67823786 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 9 1572 523 240 99 0 chr1 129372085 129372206 -67823226 - ID_B1 SINE B4 -4 220 88 9 1572 209 195 0 0 chr1 129373031 129373072 -67822360 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 9 1572 618 293 64 0 chr1 129374382 129374522 -67820910 + B3A SINE B2 9 157 -41 9 1572 405 0 0 0 chr1 129374528 129374573 -67820859 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1572 283 329 83 6 chr1 129374630 129374786 -67820646 - ORR1E LTR MaLR -172 187 20 9 1572 623 270 209 0 chr1 129374919 129375197 -67820235 + MTEa LTR MaLR 41 376 -3 9 1572 473 279 228 0 chr1 129375726 129375884 -67819548 - ID_B1 SINE B4 -28 196 3 9 1572 189 94 0 0 chr1 129376210 129376242 -67819190 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 9 1572 409 47 0 30 chr1 129376413 129376479 -67818953 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1572 297 0 0 0 chr1 129376479 129376511 -67818921 + (GA)n Simple_repeat Simple_repeat 1 33 0 9 1572 211 235 20 0 chr1 129376511 129376562 -67818870 + (TATG)n Simple_repeat Simple_repeat 2 53 0 9 1572 223 293 11 128 chr1 129376667 129376761 -67818671 - ID_B1 SINE B4 -76 148 66 9 1572 654 264 118 112 chr1 129376810 129377139 -67818293 - MTEb LTR MaLR -6 373 43 9 1572 332 259 12 0 chr1 129377236 129377317 -67818115 - MIRb SINE MIR -146 122 41 9 1572 393 224 157 41 chr1 129377409 129377530 -67817902 + ID_B1 SINE B4 87 221 -3 9 1572 637 284 108 26 chr1 129377530 129377798 -67817634 + B4 SINE B4 2 291 -1 9 1572 1082 125 6 0 chr1 129377861 129378037 -67817395 + (TTC)n Simple_repeat Simple_repeat 1 177 0 9 1572 210 185 37 9 chr1 129378037 129378148 -67817284 + CT-rich Low_complexity Low_complexity 1 114 0 9 1572 272 100 74 74 chr1 129378149 129378203 -67817229 - PB1D7 SINE Alu -2 118 65 9 1572 577 283 7 0 chr1 129378160 129378305 -67817127 - ID_B1 SINE B4 -9 215 70 9 1572 350 232 16 28 chr1 129378308 129378422 -67817010 - B1F SINE Alu -1 148 40 9 1572 387 0 0 0 chr1 129378530 129378573 -67816859 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1572 526 292 114 3 chr1 129378577 129378753 -67816679 - B4 SINE B4 -67 225 40 9 1572 198 0 0 0 chr1 129379585 129379607 -67815825 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1572 651 201 206 54 chr1 129379928 129380112 -67815320 + ID_B1 SINE B4 7 218 -6 9 1572 191 236 69 52 chr1 129383415 129383473 -67811959 + L2a LINE L2 3358 3416 -10 9 1572 279 0 0 0 chr1 129384343 129384374 -67811058 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1572 420 20 0 0 chr1 129384377 129384426 -67811006 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1572 948 245 49 64 chr1 129385156 129385422 -67810010 + B4 SINE B4 31 292 0 9 1572 380 265 61 0 chr1 129385724 129385822 -67809610 + ID_B1 SINE B4 47 150 -74 9 1572 625 246 156 20 chr1 129386044 129386243 -67809189 + B4A SINE B4 2 227 -65 9 1572 336 261 0 0 chr1 129386257 129386376 -67809056 + (CA)n Simple_repeat Simple_repeat 2 120 0 9 1572 417 324 77 55 chr1 129386923 129387106 -67808326 + B4A SINE B4 1 187 -105 9 1572 699 239 68 170 chr1 129388371 129388694 -67806738 - B4 SINE B4 -1 291 2 9 1572 770 296 144 62 chr1 129388723 129389318 -67806114 - L1MB5 LINE L1 -47 6127 5484 9 1572 432 0 0 0 chr1 129389521 129389569 -67805863 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1572 516 264 0 43 chr1 129389569 129389678 -67805754 - RSINE1 SINE B4 -59 106 2 9 1572 575 274 34 0 chr1 129389769 129389915 -67805517 + ID_B1 SINE B4 63 213 -11 9 1572 1220 89 0 11 chr1 129389919 129390100 -67805332 + (GAA)n Simple_repeat Simple_repeat 1 179 0 9 1572 297 0 0 0 chr1 129390100 129390133 -67805299 + (GGA)n Simple_repeat Simple_repeat 1 33 0 9 1572 325 215 18 123 chr1 129390920 129391090 -67804342 + HAL1-2a_MD LINE L1 2358 2509 -515 9 1572 346 243 26 53 chr1 129391320 129391472 -67803960 + HAL1-2a_MD LINE L1 2358 2505 -519 9 1572 1890 188 71 28 chr1 129391609 129392003 -67803429 + MTD LTR MaLR 4 414 -5 9 1572 487 229 99 7 chr1 129392005 129392146 -67803286 + RMER15 LTR ERVL 405 558 -17 1 1572 252 0 0 0 chr1 129392553 129392581 -67802851 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1572 192 284 144 33 chr1 129393148 129393301 -67802131 + L2a LINE L2 3208 3377 -49 1 1572 201 74 0 0 chr1 129393345 129393372 -67802060 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 1 1572 405 0 0 0 chr1 129393687 129393732 -67801700 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1572 237 241 0 48 chr1 129393747 129393830 -67801602 + (CAGAGA)n Simple_repeat Simple_repeat 4 82 0 1 1572 320 200 148 28 chr1 129394392 129394500 -67800932 - B1_Mus1 SINE Alu -16 132 12 1 1572 614 213 136 17 chr1 129394406 129394583 -67800849 - ID_B1 SINE B4 -26 198 1 1 1572 225 0 0 0 chr1 129394755 129394780 -67800652 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1572 999 140 15 106 chr1 129395029 129395228 -67800204 - URR1A DNA MER1_type -2 224 44 1 1572 866 283 73 48 chr1 129395542 129395906 -67799526 + MTE2a LTR MaLR 19 402 -17 1 1572 956 259 4 35 chr1 129396180 129396408 -67799024 - ID_B1 SINE B4 -2 222 2 1 1572 462 246 45 0 chr1 129396429 129396539 -67798893 + PB1D10 SINE Alu 3 117 0 1 1572 478 270 40 7 chr1 129397965 129398114 -67797318 + RSINE1 SINE B4 2 155 -10 1 1572 222 193 0 0 chr1 129398133 129398190 -67797242 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1572 584 321 73 18 chr1 129398214 129398598 -67796834 + L1MC4a LINE L1 7282 7686 -196 1 1572 728 240 149 113 chr1 129398753 129399008 -67796424 + B4 SINE B4 1 271 -21 1 1572 312 27 0 0 chr1 129399008 129399045 -67796387 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1572 728 240 149 113 chr1 129399045 129399071 -67796361 + B4 SINE B4 272 292 0 1 1572 363 310 30 71 chr1 129399122 129399320 -67796112 + MLT1A0 LTR MaLR 151 340 -25 1 1572 632 327 12 6 chr1 129399314 129399480 -67795952 - B3 SINE B2 -6 210 44 1 1572 333 247 58 23 chr1 129399491 129399578 -67795854 + MTD LTR MaLR 1 90 -331 1 1572 579 112 0 0 chr1 129399578 129399685 -67795747 + (TCTG)n Simple_repeat Simple_repeat 4 110 0 1 1572 719 124 16 0 chr1 129399713 129399834 -67795598 + (GGGA)n Simple_repeat Simple_repeat 1 123 0 1 1572 692 179 38 44 chr1 129399839 129399997 -67795435 + MTD LTR MaLR 263 419 0 1 1572 888 217 96 26 chr1 129400262 129400532 -67794900 + B4 SINE B4 3 291 -1 1 1572 1140 71 0 0 chr1 129400629 129400797 -67794635 + (TG)n Simple_repeat Simple_repeat 2 169 0 1 1572 792 0 0 0 chr1 129400870 129400958 -67794474 + (CTGGGG)n Simple_repeat Simple_repeat 2 89 0 1 1572 672 48 0 0 chr1 129400962 129401046 -67794386 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 1572 420 20 0 0 chr1 129401046 129401094 -67794338 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1572 22 0 0 0 chr1 129401474 129401496 -67793936 + AT_rich Low_complexity Low_complexity 1 22 0 1 1572 889 193 0 7 chr1 129401741 129401892 -67793540 - B1_Mur4 SINE Alu 0 150 1 1 1572 620 227 248 14 chr1 129401932 129402236 -67793196 + ORR1E LTR MaLR 5 379 0 1 1572 463 232 34 53 chr1 129402236 129402402 -67793030 - B1F SINE Alu -18 131 1 1 1572 405 58 0 0 chr1 129402833 129402885 -67792547 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 1 1572 490 286 79 0 chr1 129402885 129403011 -67792421 - ID_B1 SINE B4 -9 215 80 1 1572 561 286 25 19 chr1 129403051 129403208 -67792224 + RSINE1 SINE B4 1 158 -7 1 1572 268 284 153 0 chr1 129403331 129403507 -67791925 - L1ME3 LINE L1 -130 6032 5830 1 1572 729 280 36 27 chr1 129403796 129404020 -67791412 - MT2A LTR ERVL -109 424 199 1 1572 367 287 106 23 chr1 129404024 129404156 -67791276 - MTEa LTR MaLR -236 143 1 1 1572 384 214 12 12 chr1 129404479 129404564 -67790868 + RMER30 DNA MER1_type 6 90 -112 1 1572 533 115 0 11 chr1 129404566 129404654 -67790778 + (GA)n Simple_repeat Simple_repeat 1 87 0 1 1572 324 197 56 0 chr1 129404655 129404726 -67790706 - Charlie12 DNA MER1_type -2768 105 31 1 1572 519 240 0 0 chr1 129406002 129406102 -67789330 + MTEa LTR MaLR 5 104 -275 1 1572 252 0 0 0 chr1 129406279 129406307 -67789125 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1572 252 0 0 0 chr1 129406810 129406838 -67788594 + (TTAG)n Simple_repeat Simple_repeat 1 28 0 1 1572 387 0 0 0 chr1 129407033 129407076 -67788356 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1572 312 27 0 0 chr1 129407076 129407112 -67788320 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1572 258 154 19 37 chr1 129407112 129407123 -67788309 - ID SINE ID -142 82 30 1 1572 278 116 23 0 chr1 129407123 129407166 -67788266 - ID4 SINE ID -11 72 29 1 1572 267 150 0 0 chr1 129408383 129408443 -67786989 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1572 460 268 118 63 chr1 129408495 129408750 -67786682 - B4A SINE B4 -23 269 1 1 1572 903 259 36 36 chr1 129408750 129408973 -67786459 - B4 SINE B4 -59 233 11 1 1572 201 74 0 0 chr1 129408973 129409000 -67786432 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1572 276 299 0 30 chr1 129409306 129409406 -67786026 - MIR SINE MIR -102 160 64 1 1572 643 226 29 88 chr1 129409408 129409578 -67785854 - RMER5 LTR ERV1 0 534 375 1 1572 1158 161 4 86 chr1 129409746 129409991 -67785441 + URR1B DNA MER1_type 1 225 0 1 1572 268 347 10 0 chr1 129410219 129410317 -67785115 + GA-rich Low_complexity Low_complexity 4 102 0 1 1572 214 196 22 0 chr1 129410727 129410773 -67784659 + CT-rich Low_complexity Low_complexity 2 48 0 1 1572 1106 199 38 0 chr1 129410774 129410985 -67784447 - ID_B1 SINE B4 -2 222 4 1 1572 576 286 108 98 chr1 129411354 129411641 -67783791 + B4A SINE B4 3 292 0 1 1572 468 255 0 0 chr1 129411649 129411794 -67783638 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1572 590 243 44 65 chr1 129411876 129412105 -67783327 - ID_B1 SINE B4 0 224 1 1 1572 1875 151 68 15 chr1 129412302 129412638 -67782794 + ORR1B1 LTR MaLR 41 394 0 1 1572 530 269 30 36 chr1 129412796 129412962 -67782470 - B4A SINE B4 -126 166 2 1 1572 984 293 54 29 chr1 129413318 129413758 -67781674 + Lx7 LINE L1 5622 6051 -1593 1 1572 1112 248 21 18 chr1 129413843 129414126 -67781306 + B4 SINE B4 2 285 -7 1 1572 348 24 0 0 chr1 129414931 129414972 -67780460 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1572 262 295 31 47 chr1 129415020 129415148 -67780284 + RMER15 LTR ERVL 2 127 -448 1 1572 243 287 50 50 chr1 129416102 129416201 -67779231 + RMER15 LTR ERVL 62 160 -415 1 1572 623 281 150 13 chr1 129416195 129416422 -67779010 + RMER15 LTR ERVL 272 529 -46 1 1572 369 290 62 46 chr1 129416414 129416544 -67778888 + B4A SINE B4 138 269 -23 1 1572 1254 104 0 0 chr1 129416544 129416900 -67778532 + (CA)n Simple_repeat Simple_repeat 1 356 0 1 1572 251 266 89 0 chr1 129417704 129417783 -67777649 + B4A SINE B4 1 86 -206 1 1572 230 0 33 0 chr1 129417784 129417814 -67777618 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1572 367 271 31 10 chr1 129417822 129417919 -67777513 + B4A SINE B4 134 232 -60 1 1572 477 309 16 43 chr1 129417920 129418106 -67777326 + B3A SINE B2 2 182 -16 1 1572 280 231 169 0 chr1 129418155 129418220 -67777212 + B4A SINE B4 217 292 0 1 1572 663 13 0 0 chr1 129418247 129418323 -67777109 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1572 405 0 0 0 chr1 129418323 129418367 -67777065 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1572 441 0 0 0 chr1 129418615 129418664 -67776768 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1572 245 238 36 36 chr1 129418895 129418978 -67776454 + MER5A DNA MER1_type 15 97 -92 1 1572 1084 190 110 79 chr1 129419446 129419801 -67775631 + RLTR9A LTR ERVK 1 366 -2 1 1572 237 65 0 0 chr1 129419802 129419833 -67775599 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1572 481 252 144 6 chr1 129420562 129420722 -67774710 + B4A SINE B4 34 215 -77 1 1572 735 321 44 22 chr1 129420722 129420996 -67774436 + B4A SINE B4 7 286 -6 1 1572 514 0 30 0 chr1 129421213 129421279 -67774153 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1572 349 195 57 40 chr1 129421905 129422006 -67773426 + PB1D10 SINE Alu 19 117 0 1 1572 432 0 0 0 chr1 129422033 129422081 -67773351 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1 1572 1004 100 0 0 chr1 129422214 129422354 -67773078 + URR1A DNA MER1_type 79 218 -8 1 1572 563 292 0 0 chr1 129422418 129422562 -67772870 - B1F SINE Alu -1 148 5 1 1572 5218 37 34 2 chr1 129422652 129423279 -67772153 - L1Md_F2 LINE L1 -10 6572 5926 1 1572 1042 243 8 98 chr1 129423309 129423636 -67771796 - B4A SINE B4 0 292 3 1 1572 1045 245 10 0 chr1 129423840 129424048 -67771384 + B3 SINE B2 2 211 -5 1 1572 747 231 42 52 chr1 129424125 129424317 -67771115 - B3A SINE B2 0 198 9 1 1572 245 333 165 9 chr1 129424349 129424458 -67770974 - MER2 DNA MER2_type -175 170 45 1 1572 204 314 0 184 chr1 129424466 129424589 -67770843 + MIRb SINE MIR 85 185 -83 1 1572 1104 243 91 139 chr1 129424589 129425148 -67770284 + MT2A LTR ERVL 2 533 0 1 1572 204 314 0 184 chr1 129425148 129425176 -67770256 + MIRb SINE MIR 186 208 -60 1 1572 884 261 68 68 chr1 129425541 129425567 -67769865 - B4 SINE B4 0 292 276 1 1572 210 71 0 0 chr1 129425567 129425595 -67769837 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1572 884 261 68 68 chr1 129425595 129425860 -67769572 - B4 SINE B4 -17 275 1 1 1572 189 255 34 68 chr1 129425946 129426005 -67769427 + MIR SINE MIR 21 77 -131 1 1572 319 271 21 96 chr1 129426325 129426419 -67769013 + B3A SINE B2 98 184 -14 1 1572 964 244 55 55 chr1 129426811 129427102 -67768330 + B4 SINE B4 2 292 0 1 1572 1207 41 0 20 chr1 129427127 129427276 -67768156 + B1_Mus2 SINE Alu 2 147 0 1 1572 355 350 11 17 chr1 129428500 129428741 -67766691 + (TATG)n Simple_repeat Simple_repeat 1 239 0 1 1572 49 66 0 0 chr1 129428905 129428996 -67766436 + AT_rich Low_complexity Low_complexity 1 91 0 1 1572 957 131 0 0 chr1 129429187 129429340 -67766092 + (TATATG)n Simple_repeat Simple_repeat 4 156 0 1 1572 228 135 0 0 chr1 129429469 129429506 -67765926 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1572 844 308 59 30 chr1 129429508 129429813 -67765619 + MTE2a LTR MaLR 66 379 0 1 1572 312 143 0 0 chr1 129430222 129430278 -67765154 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1572 672 320 141 43 chr1 129430318 129430573 -67764859 - B4A SINE B4 -1 291 12 1 1572 595 201 206 6 chr1 129430946 129431126 -67764306 - ID_B1 SINE B4 -8 216 1 1 1572 326 312 136 35 chr1 129431196 129431395 -67764037 + L1ME4a LINE L1 5830 6048 -76 1 1572 830 325 79 45 chr1 129431624 129431979 -67763453 + MTEa LTR MaLR 2 368 -11 1 1572 730 272 6 11 chr1 129432541 129432723 -67762709 - B3A SINE B2 -15 183 3 1 1572 687 247 11 46 chr1 129432938 129433028 -67762404 + ID SINE ID 1 84 -140 1 1572 408 268 41 0 chr1 129433028 129433125 -67762307 + PB1D10 SINE Alu 3 103 -14 1 1572 779 261 5 39 chr1 129433300 129433503 -67761929 + B3A SINE B2 3 198 0 1 1572 207 0 0 0 chr1 129433774 129433797 -67761635 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1572 232 329 14 0 chr1 129434440 129434510 -67760922 - B4 SINE B4 0 292 222 1 1572 570 272 101 20 chr1 129434521 129434720 -67760712 - B3 SINE B2 0 216 2 1 1572 966 251 18 18 chr1 129434740 129434959 -67760473 - B4 SINE B4 -72 220 2 1 1572 4239 144 63 20 chr1 129435992 129436735 -67758697 + Lx3C LINE L1 6195 6969 -7 1 1572 1008 177 126 0 chr1 129436860 129437058 -67758374 + ORR1D1 LTR MaLR 1 223 -151 1 1572 303 233 33 0 chr1 129437057 129437117 -67758315 + ID_B1 SINE B4 163 224 0 1 1572 24 0 0 0 chr1 129437202 129437226 -67758206 + AT_rich Low_complexity Low_complexity 1 24 0 1 1572 536 243 104 21 chr1 129437360 129437514 -67757918 - ID_B1 SINE B4 -68 224 67 1 1572 333 0 0 0 chr1 129437572 129437609 -67757823 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1572 787 215 7 0 chr1 129438113 129438257 -67757175 - RSINE1 SINE B4 -17 148 4 1 1572 186 43 0 0 chr1 129439024 129439047 -67756385 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 1 1572 307 253 0 46 chr1 129439061 129439148 -67756284 - ID4 SINE ID 0 83 1 1 1572 227 235 72 24 chr1 129439210 129439240 -67756192 - MTD LTR MaLR 0 370 343 1 1572 232 83 42 0 chr1 129439240 129439288 -67756144 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1572 1195 231 94 58 chr1 129439288 129439651 -67755781 - MTD LTR MaLR -29 390 12 1 1572 326 282 25 13 chr1 129439688 129439767 -67755665 + RSINE1 SINE B4 3 82 -83 1 1572 228 341 32 42 chr1 129439696 129439791 -67755641 + B3A SINE B2 10 103 -95 1 1572 317 138 62 0 chr1 129439866 129439936 -67755496 + RLTR20B3 LTR ERVK 143 236 -341 1 1572 304 292 74 8 chr1 129439909 129440030 -67755402 + MTE2a LTR MaLR 49 177 -202 1 1572 796 218 59 34 chr1 129440038 129440242 -67755190 + B3 SINE B2 2 210 -6 1 1572 881 214 8 103 chr1 129440255 129440489 -67754943 + MTE2a LTR MaLR 168 379 0 1 1572 245 317 137 50 chr1 129440591 129440853 -67754579 + MTEa LTR MaLR 8 292 -87 1 1572 517 301 64 64 chr1 129440713 129440933 -67754499 + MT2A LTR ERVL 136 355 -178 1 1572 897 266 123 13 chr1 129440942 129441243 -67754189 - RLTR40 LTR ERVK -13 804 471 1 1572 1012 194 22 6 chr1 129441264 129441445 -67753987 - B3 SINE B2 -6 210 27 1 1572 2071 173 89 39 chr1 129441441 129441632 -67753800 - RLTR40 LTR ERVK -333 484 298 1 1572 342 0 0 0 chr1 129441632 129441670 -67753762 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1572 2071 173 89 39 chr1 129441670 129441936 -67753496 - RLTR40 LTR ERVK -520 297 6 1 1572 347 304 113 0 chr1 129441986 129442101 -67753331 + MT2A LTR ERVL 406 533 0 1 1572 462 279 61 76 chr1 129442145 129442343 -67753089 + B3A SINE B2 1 195 -3 1 1572 381 243 68 75 chr1 129442409 129442556 -67752876 + L1MB1 LINE L1 5538 5683 -488 1 1572 329 220 98 16 chr1 129442592 129442722 -67752710 + L1MB1 LINE L1 5771 5911 -267 1 1572 726 228 56 19 chr1 129442764 129442925 -67752507 + B3 SINE B2 42 208 -8 1 1572 376 304 68 28 chr1 129442929 129443105 -67752327 + Lx8 LINE L1 7056 7238 -235 1 1572 1085 245 91 94 chr1 129443112 129443380 -67752052 - MTEa LTR MaLR -2 377 85 1 1572 1264 41 0 0 chr1 129443380 129443527 -67751905 + B1_Mm SINE Alu 1 147 0 1 1572 1085 245 91 94 chr1 129443527 129443632 -67751800 - MTEa LTR MaLR -295 84 5 1 1572 392 294 68 0 chr1 129443749 129443895 -67751537 + L1MB1 LINE L1 5904 6059 -109 1 1572 276 213 132 13 chr1 129443922 129443998 -67751434 + L1MB2 LINE L1 6035 6119 -52 1 1572 991 294 7 20 chr1 129444011 129444306 -67751126 + B4 SINE B4 2 292 0 1 1572 850 292 13 44 chr1 129444989 129445108 -67750324 + B4 SINE B4 71 190 -102 1 1572 389 130 0 0 chr1 129445108 129445177 -67750255 + Lx9 LINE L1 7574 7642 -2 1 1572 850 292 13 44 chr1 129445177 129445194 -67750238 + B4 SINE B4 191 205 -87 1 1572 351 0 0 0 chr1 129445194 129445233 -67750199 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1572 850 292 13 44 chr1 129445233 129445324 -67750108 + B4 SINE B4 206 292 0 1 1572 417 54 0 0 chr1 129445332 129445388 -67750044 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1572 423 0 0 0 chr1 129445861 129445908 -67749524 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1572 337 189 0 0 chr1 129445909 129445962 -67749470 - B4 SINE B4 -217 75 23 1 1572 190 106 21 21 chr1 129446476 129446524 -67748908 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1572 421 279 193 6 chr1 129446561 129446727 -67748705 - B3A SINE B2 -1 197 1 1 1572 255 204 0 0 chr1 129447358 129447407 -67748025 + ID4 SINE ID 2 50 -33 1 1572 267 247 71 0 chr1 129447430 129447515 -67747917 + GA-rich Low_complexity Low_complexity 4 94 0 1 1572 352 128 0 25 chr1 129447543 129447623 -67747809 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 1 1572 180 0 0 0 chr1 129448459 129448479 -67746953 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1572 402 286 23 11 chr1 129448512 129448689 -67746743 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1572 941 252 18 13 chr1 129450049 129450278 -67745154 + B4 SINE B4 5 234 -58 1 1572 542 240 42 144 chr1 129450289 129450463 -67744969 + B3A SINE B2 41 197 -1 1 1572 411 56 0 0 chr1 129450546 129450600 -67744832 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1572 715 148 139 8 chr1 129451288 129451417 -67744015 - B1_Mus2 SINE Alu -1 146 1 1 1572 647 256 101 19 chr1 129451460 129451667 -67743765 - B4 SINE B4 -66 226 3 1 1572 522 210 193 14 chr1 129452020 129452165 -67743267 + RMER15 LTR ERVL 340 510 -65 1 1572 1097 269 3 49 chr1 129453542 129453847 -67741585 + B4 SINE B4 2 292 0 1 1572 372 248 58 29 chr1 129453893 129454026 -67741406 + MTE2b LTR MaLR 241 369 -1 1 1572 366 217 206 9 chr1 129454484 129454591 -67740841 - RSINE1 SINE B4 -36 129 2 1 1572 2112 128 41 41 chr1 129454834 129455201 -67740231 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1572 58145 16 7 10 chr1 129455201 129461694 -67733738 - IAPEz-int LTR ERVK 0 6481 8 1 1572 2112 128 41 41 chr1 129461694 129462061 -67733371 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1572 270 247 41 0 chr1 129462355 129462428 -67733004 + GA-rich Low_complexity Low_complexity 1 76 0 1 1572 788 163 15 23 chr1 129462531 129462663 -67732769 + B1_Mur3 SINE Alu 19 149 0 1 1572 815 234 83 0 chr1 129462667 129462859 -67732573 - B3 SINE B2 -7 209 2 1 1572 324 0 0 0 chr1 129463020 129463056 -67732376 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1572 965 227 63 5 chr1 129463249 129463467 -67731965 + B4A SINE B4 1 231 -61 1 1572 847 164 7 21 chr1 129463467 129463610 -67731822 + B1_Mus1 SINE Alu 1 141 -7 1 1572 569 278 98 67 chr1 129463476 129463611 -67731821 + B4A SINE B4 94 220 -72 1 1572 206 62 0 30 chr1 129463611 129463644 -67731788 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1 1572 569 278 98 67 chr1 129463644 129463701 -67731731 + B4A SINE B4 221 292 0 1 1572 351 0 0 0 chr1 129463709 129463748 -67731684 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1572 216 135 0 0 chr1 129463785 129463822 -67731610 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 1 1572 435 279 107 67 chr1 129464187 129464337 -67731095 + ID_B1 SINE B4 50 205 -19 1 1572 540 251 71 39 chr1 129464355 129464604 -67730828 - MTE2a LTR MaLR -137 242 19 1 1572 4055 194 117 12 chr1 129464709 129464779 -67730653 - RMER1B Other Other 0 1066 1001 1 1572 5893 121 39 20 chr1 129464779 129465719 -67729713 - RMER17B LTR ERVK 0 958 1 1 1572 4055 194 117 12 chr1 129465719 129466486 -67728946 - RMER1B Other Other -66 1000 141 1 1572 1160 261 57 0 chr1 129466486 129466766 -67728666 - RMER1B Other Other -716 350 55 1 1572 250 156 0 43 chr1 129466767 129466814 -67728618 - RMER1B Other Other -981 85 41 1 1572 243 0 0 0 chr1 129466960 129466987 -67728445 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1572 678 225 68 6 chr1 129467031 129467192 -67728240 + MTEa LTR MaLR 209 379 0 1 1572 438 192 85 19 chr1 129467385 129467491 -67727941 - MER68 LTR ERVL -327 236 124 1 1572 719 275 12 0 chr1 129467538 129467698 -67727734 + ID_B1 SINE B4 63 224 0 1 1572 916 137 6 11 chr1 129467699 129467876 -67727556 + GA-rich Low_complexity Low_complexity 2 177 0 1 1572 334 260 194 29 chr1 129467876 129467979 -67727453 + B1_Mur3 SINE Alu 1 120 0 1 1572 542 213 7 0 chr1 129467982 129468132 -67727300 + GA-rich Low_complexity Low_complexity 2 152 0 1 1572 332 260 194 29 chr1 129468165 129468268 -67727164 + B1_Mur3 SINE Alu 1 120 0 1 1572 786 109 0 0 chr1 129468296 129468415 -67727017 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 1 1572 196 182 0 185 chr1 129469109 129469163 -67726269 - MIR3 SINE MIR -21 187 144 1 1572 400 247 121 25 chr1 129469163 129469362 -67726070 + RMER12 LTR ERVK 771 988 -334 1 1572 249 180 0 0 chr1 129469369 129469419 -67726013 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1572 1257 272 11 4 chr1 129469464 129469741 -67725691 - B4 SINE B4 -9 283 5 1 1572 685 239 48 19 chr1 129470059 129470255 -67725177 + B3 SINE B2 1 195 0 1 1572 807 131 0 0 chr1 129471050 129471187 -67724245 + (TGGA)n Simple_repeat Simple_repeat 2 138 0 1 1572 833 293 39 0 chr1 129471213 129471421 -67724011 + ID_B1 SINE B4 2 217 -7 1 1572 474 75 0 0 chr1 129471845 129471912 -67723520 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1572 495 141 0 0 chr1 129473095 129473187 -67722245 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 1572 549 187 0 124 chr1 129473209 129473362 -67722070 - BC1_Mm scRNA scRNA -18 134 1 1 1572 678 241 21 16 chr1 129474055 129474227 -67721205 - ID_B1 SINE B4 -18 274 99 1 1572 270 0 0 0 chr1 129474412 129474442 -67720990 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1572 853 238 22 0 chr1 129474536 129474717 -67720715 + B4 SINE B4 17 201 -91 1 1572 458 267 182 6 chr1 129475208 129475389 -67720043 + ID_B1 SINE B4 1 213 -11 1 1572 1256 38 6 0 chr1 129475737 129475895 -67719537 + (TTCCC)n Simple_repeat Simple_repeat 3 161 0 1 1572 234 91 55 0 chr1 129476297 129476352 -67719080 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1572 778 229 98 57 chr1 129476362 129476626 -67718806 - B4 SINE B4 -16 276 2 1 1572 200 310 0 14 chr1 129477013 129477085 -67718347 + GA-rich Low_complexity Low_complexity 2 72 0 1 1572 24 0 0 0 chr1 129477772 129477796 -67717636 + AT_rich Low_complexity Low_complexity 1 24 0 1 1572 470 331 0 47 chr1 129478060 129478209 -67717223 + RSINE1 SINE B4 6 147 -18 1 1572 321 89 0 0 chr1 129478209 129478254 -67717178 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1572 243 186 178 41 chr1 129478430 129478503 -67716929 - ID4 SINE ID 0 83 1 1 1572 841 250 114 9 chr1 129478791 129478997 -67716435 + B4 SINE B4 2 229 -63 1 1572 1043 278 62 15 chr1 129478997 129479256 -67716176 + B4A SINE B4 2 272 -20 1 1572 275 255 0 18 chr1 129479323 129479379 -67716053 + B4 SINE B4 220 274 -18 1 1572 195 42 0 0 chr1 129479400 129479424 -67716008 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1572 240 188 0 0 chr1 129479424 129479488 -67715944 + GA-rich Low_complexity Low_complexity 1 64 0 1 1572 694 233 66 13 chr1 129479605 129479757 -67715675 - B4A SINE B4 -124 168 9 1 1572 994 304 22 0 chr1 129480112 129480385 -67715047 + B4A SINE B4 12 290 -2 1 1572 432 292 53 58 chr1 129480414 129480585 -67714847 - ORR1E LTR MaLR -44 315 146 1 1572 407 356 42 30 chr1 129480786 129480956 -67714476 + B4 SINE B4 78 289 -3 1 1572 438 313 46 0 chr1 129481440 129481571 -67713861 + B1F SINE Alu 6 142 -7 1 1572 263 257 14 14 chr1 129481571 129481642 -67713790 + GA-rich Low_complexity Low_complexity 2 72 0 1 1572 275 202 202 0 chr1 129481728 129481817 -67713615 - Lx8 LINE L1 -2 7471 7365 1 1572 344 355 7 0 chr1 129481881 129481939 -67713493 - Lx8 LINE L1 -446 7027 6970 1 1572 180 0 0 0 chr1 129481939 129481959 -67713473 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1572 344 355 7 0 chr1 129481959 129482041 -67713391 - Lx8 LINE L1 -504 6969 6887 1 1572 355 317 10 0 chr1 129482184 129482285 -67713147 - RSINE1 SINE B4 -61 104 3 1 1572 434 303 103 44 chr1 129482480 129482825 -67712607 - MLT1C LTR MaLR -3 464 1 1 1572 3610 233 55 56 chr1 129482974 129483216 -67712216 - RCHARR1 DNA MER1_type 0 974 736 1 1572 843 170 30 0 chr1 129483216 129483351 -67712081 + B1_Mus2 SINE Alu 2 140 -7 1 1572 3610 233 55 56 chr1 129483351 129484078 -67711354 - RCHARR1 DNA MER1_type -239 735 6 1 1572 3243 46 8 2 chr1 129484703 129485097 -67710335 - MTA_Mm LTR MaLR 0 396 1 1 1572 226 125 42 0 chr1 129485509 129485557 -67709875 + GA-rich Low_complexity Low_complexity 3 52 0 1 1572 340 266 44 35 chr1 129485558 129485671 -67709761 + B4 SINE B4 27 140 -152 1 1572 725 256 247 5 chr1 129486547 129486767 -67708665 - B4 SINE B4 -14 278 5 1 1572 418 308 24 30 chr1 129486844 129487008 -67708424 - RSINE1 SINE B4 0 165 3 1 1572 240 267 0 0 chr1 129487063 129487123 -67708309 - PB1 SINE Alu -66 61 2 1 1572 2893 34 7 136 chr1 129487341 129487789 -67707643 + RLTR10 LTR ERVK 1 390 0 1 1572 8163 38 6 2 chr1 129487799 129488753 -67706679 + RLTR10-int LTR ERVK 41 998 -989 1 1572 396 224 62 39 chr1 129488817 129488947 -67706485 + RLTR10-int LTR ERVK 1462 1594 -5987 1 1572 8831 22 3 1 chr1 129489029 129490022 -67705410 + RLTR10-int LTR ERVK 990 1984 -3 1 1572 2893 34 7 136 chr1 129490024 129490472 -67704960 + RLTR10 LTR ERVK 1 390 0 1 1572 1153 58 0 0 chr1 129490620 129490759 -67704673 + B1_Mus1 SINE Alu 2 140 -8 1 1572 207 0 0 0 chr1 129490759 129490782 -67704650 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1572 729 229 7 0 chr1 129490793 129490933 -67704499 + B1_Mur4 SINE Alu 5 145 -5 1 1572 231 36 0 0 chr1 129490933 129490961 -67704471 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1572 862 297 48 16 chr1 129490970 129491220 -67704212 + B4 SINE B4 1 258 -34 1 1572 510 17 0 0 chr1 129491228 129491287 -67704145 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1572 1212 271 85 68 chr1 129492023 129492538 -67702894 + RMER5 LTR ERV1 2 525 -9 1 1572 1158 237 64 21 chr1 129493208 129493488 -67701944 + B4A SINE B4 1 292 0 1 1572 672 13 0 0 chr1 129493988 129494065 -67701367 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1572 632 231 99 45 chr1 129494078 129494300 -67701132 - B4 SINE B4 -50 242 9 1 1572 219 69 0 0 chr1 129494566 129494595 -67700837 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1572 423 258 7 27 chr1 129494720 129495628 -67699804 + (CA)n Simple_repeat Simple_repeat 1 889 0 1 1572 405 0 0 0 chr1 129495757 129495802 -67699630 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1572 307 159 159 0 chr1 129496126 129496189 -67699243 - MTE2b LTR MaLR -305 74 2 1 1572 660 256 126 35 chr1 129496465 129496639 -67698793 + ID_B1 SINE B4 34 223 -1 1 1572 441 339 26 26 chr1 129497147 129497341 -67698091 + B4 SINE B4 99 292 0 1 1572 800 226 116 0 chr1 129497437 129497618 -67697814 + B3 SINE B2 1 202 -14 1 1572 201 198 35 0 chr1 129497623 129497709 -67697723 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1572 241 260 248 10 chr1 129497747 129497848 -67697584 - MIR SINE MIR -129 133 9 1 1572 349 307 220 38 chr1 129498047 129498206 -67697226 - B3A SINE B2 -2 214 27 1 1572 216 0 0 0 chr1 129498206 129498230 -67697202 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1572 1260 34 0 0 chr1 129498230 129498376 -67697056 - B1_Mm SINE Alu 0 147 2 1 196 1088 268 88 11 chr1 129498953 129499236 -67696196 - ORR1E LTR MaLR 0 359 55 1 1573 908 295 68 101 chr1 129499282 129499839 -67695593 + RLTR18 LTR ERVK 72 610 -6 1 1573 235 222 45 60 chr1 129499823 129499890 -67695542 - ORR1E LTR MaLR -293 66 1 1 1573 298 343 37 0 chr1 129499890 129499998 -67695434 + MIRb SINE MIR 88 199 -69 1 1573 642 272 29 6 chr1 129501119 129501289 -67694143 + B4A SINE B4 3 176 -116 1 1573 309 89 0 0 chr1 129501358 129501403 -67694029 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1573 228 122 0 0 chr1 129501412 129501453 -67693979 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 1573 270 250 0 0 chr1 129501463 129501599 -67693833 + (CA)n Simple_repeat Simple_repeat 2 137 0 4 1573 200 258 0 0 chr1 129501605 129501671 -67693761 + (CAGA)n Simple_repeat Simple_repeat 2 67 0 5 1573 192 125 0 0 chr1 129501671 129501703 -67693729 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1573 565 227 80 7 chr1 129501966 129502041 -67693391 + ID SINE ID 3 88 -136 7 1573 308 229 103 10 chr1 129502041 129502138 -67693294 + PB1D10 SINE Alu 1 106 -11 8 1573 710 258 88 38 chr1 129502707 129502969 -67692463 + B4A SINE B4 2 276 -16 9 1573 217 277 15 0 chr1 129503010 129503075 -67692357 + A-rich Low_complexity Low_complexity 5 70 0 1 1573 227 272 10 115 chr1 129503084 129503188 -67692244 + ORR1E LTR MaLR 21 113 -246 1 1573 746 246 6 18 chr1 129503411 129503581 -67691851 + ID_B1 SINE B4 2 169 -55 1 1573 509 298 65 90 chr1 129503758 129503992 -67691440 + MTD LTR MaLR 1 228 -191 1 1573 495 0 0 0 chr1 129503992 129504047 -67691385 + (CCTG)n Simple_repeat Simple_repeat 3 57 0 1 1573 509 298 65 90 chr1 129504047 129504089 -67691343 + MTD LTR MaLR 229 270 -149 1 1573 729 228 40 88 chr1 129504104 129504455 -67690977 + RLTR15 LTR ERVK 8 341 -18 1 1573 375 268 81 0 chr1 129504514 129504637 -67690795 + MTD LTR MaLR 277 409 -10 1 1573 919 296 90 83 chr1 129504988 129505456 -67689976 + Tigger7 DNA MER2_type 29 499 -1992 1 1573 260 289 28 37 chr1 129505456 129505564 -67689868 + Lx8 LINE L1 7359 7465 -8 1 1573 577 274 66 16 chr1 129505907 129506089 -67689343 + RLTR42-int LTR ERVK 4253 4443 -1079 1 1573 1235 150 75 15 chr1 129506094 129506385 -67689047 + RLTR12B LTR ERVK 1 421 -107 1 1573 861 128 0 0 chr1 129506818 129506998 -67688434 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1573 240 35 0 0 chr1 129506998 129507027 -67688405 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1573 336 313 61 15 chr1 129507360 129507558 -67687874 + L1MD1 LINE L1 4449 4655 -1491 2 1573 457 286 54 48 chr1 129507568 129507715 -67687717 + RSINE1 SINE B4 12 159 -6 2 1573 261 83 0 0 chr1 129508015 129508051 -67687381 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1573 474 312 32 51 chr1 129508059 129508363 -67687069 + B4A SINE B4 2 281 -11 2 1573 1084 234 175 27 chr1 129508376 129508741 -67686691 - MTD LTR MaLR 0 419 1 2 1573 1236 169 25 17 chr1 129508833 129509074 -67686358 + ORR1B1 LTR MaLR 1 243 -151 2 1573 189 0 0 0 chr1 129509074 129509095 -67686337 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1573 539 220 34 156 chr1 129509095 129509126 -67686306 + ORR1A4 LTR MaLR 178 212 -117 2 1573 523 29 29 0 chr1 129509279 129509348 -67686084 + ORR1A4 LTR MaLR 259 329 0 2 1573 604 255 75 37 chr1 129509360 129509742 -67685690 + L1MD1 LINE L1 5045 5440 -739 2 1573 1041 166 60 19 chr1 129509742 129509957 -67685475 + ID_B1 SINE B4 1 224 0 3 1573 771 214 72 57 chr1 129510056 129510249 -67685183 + B3A SINE B2 1 196 -2 3 1573 4974 35 0 0 chr1 129510254 129510825 -67684607 - L1Md_F2 LINE L1 -12 6570 6000 3 1573 267 215 95 0 chr1 129510825 129510950 -67684482 + L1MD1 LINE L1 5509 5654 -2131 2 1573 30 0 0 0 chr1 129511078 129511108 -67684324 + AT_rich Low_complexity Low_complexity 1 30 0 3 1573 722 319 37 9 chr1 129511134 129511457 -67683975 + L1MD1 LINE L1 5651 5982 -260 2 1573 700 304 40 36 chr1 129511553 129511802 -67683630 + B4A SINE B4 2 251 -41 3 1573 16535 59 11 2 chr1 129511802 129513874 -67681558 + L1_Mm LINE L1 3493 5586 -297 3 1573 7782 70 0 17 chr1 129513874 129514881 -67680551 + L1Md_F2 LINE L1 5587 6576 -6 3 1573 24 32 0 0 chr1 129514889 129514920 -67680512 + AT_rich Low_complexity Low_complexity 1 31 0 3 1573 678 131 7 14 chr1 129514967 129515114 -67680318 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 3 1573 180 0 0 0 chr1 129515144 129515164 -67680268 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1573 388 241 0 0 chr1 129515253 129515336 -67680096 - B3A SINE B2 -56 142 60 4 1573 387 0 0 0 chr1 129515365 129515408 -67680024 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 4 1573 933 174 107 31 chr1 129515504 129515729 -67679703 + RLTR14 LTR ERV1 8 249 -133 4 1573 314 240 99 10 chr1 129516064 129516165 -67679267 + MLT1A1 LTR MaLR 1 110 -298 4 1573 497 126 56 0 chr1 129516255 129516398 -67679034 + (TCTG)n Simple_repeat Simple_repeat 2 152 0 4 1573 389 267 20 17 chr1 129516398 129516694 -67678738 + CT-rich Low_complexity Low_complexity 1 297 0 4 1573 467 186 24 48 chr1 129516726 129516859 -67678573 + MLT1A1 LTR MaLR 299 408 0 4 1573 638 187 43 0 chr1 129517103 129517242 -67678190 - URR1A DNA MER1_type -1 225 81 4 1573 1232 232 120 19 chr1 129517301 129517675 -67677757 - MTD LTR MaLR 0 419 8 4 1573 210 91 0 0 chr1 129517797 129517830 -67677602 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1573 660 240 14 0 chr1 129517857 129518003 -67677429 - B3A SINE B2 -50 148 1 4 1573 774 287 50 61 chr1 129518254 129518551 -67676881 + Lx8 LINE L1 7178 7471 -2 5 1573 944 241 64 32 chr1 129518600 129518883 -67676549 + B4 SINE B4 1 292 0 5 1573 729 281 44 41 chr1 129519298 129519569 -67675863 + B4A SINE B4 3 274 -18 5 1573 279 104 0 0 chr1 129519572 129519620 -67675812 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1573 199 0 0 61 chr1 129519644 129519677 -67675755 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 5 1573 2830 125 34 0 chr1 129520173 129520580 -67674852 - MTC LTR MaLR 0 421 1 5 1573 381 75 0 0 chr1 129521334 129521387 -67674045 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1573 661 314 55 59 chr1 129521444 129521715 -67673717 - B4 SINE B4 -1 291 22 5 1573 306 0 0 0 chr1 129522054 129522088 -67673344 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1573 234 0 0 0 chr1 129522088 129522113 -67673319 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1573 452 294 66 0 chr1 129522605 129522741 -67672691 + B4A SINE B4 1 145 -147 6 1573 2019 144 98 5 chr1 129523104 129523482 -67671950 + MTC LTR MaLR 1 413 -8 6 1573 838 256 35 62 chr1 129523484 129523742 -67671690 - B4A SINE B4 -40 252 2 6 1573 3198 60 0 17 chr1 129524171 129524578 -67670854 - MTB LTR MaLR 0 400 1 6 1573 568 179 9 0 chr1 129524803 129524909 -67670523 - B3 SINE B2 -109 107 1 6 1573 216 200 33 0 chr1 129525052 129525142 -67670290 + (TG)n Simple_repeat Simple_repeat 1 93 0 6 1573 496 175 19 12 chr1 129525162 129525324 -67670108 + (TG)n Simple_repeat Simple_repeat 1 163 0 6 1573 212 259 0 17 chr1 129525335 129525394 -67670038 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1573 203 0 0 36 chr1 129525412 129525440 -67669992 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1573 502 283 56 105 chr1 129525526 129525830 -67669602 - B4 SINE B4 -3 289 1 6 1573 816 114 0 0 chr1 129525882 129526013 -67669419 + (GGAGAA)n Simple_repeat Simple_repeat 6 136 0 6 1573 326 280 39 20 chr1 129526633 129526735 -67668697 + B4 SINE B4 185 288 -4 6 1573 435 118 105 0 chr1 129527238 129527314 -67668118 + URR1B DNA MER1_type 141 224 -1 6 1573 494 262 52 75 chr1 129527323 129527496 -67667936 + MLT1D LTR MaLR 302 470 -35 6 1573 1602 32 16 0 chr1 129527500 129527689 -67667743 - B2_Mm1t SINE B2 0 193 2 7 1573 317 238 8 0 chr1 129528244 129528366 -67667066 + CT-rich Low_complexity Low_complexity 1 123 0 7 1573 192 97 0 0 chr1 129528368 129528399 -67667033 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1573 795 223 40 89 chr1 129528399 129528601 -67666831 - ID_B1 SINE B4 -18 206 15 7 1573 869 272 14 5 chr1 129529095 129529309 -67666123 + ID_B1 SINE B4 1 216 -8 7 1573 483 269 25 0 chr1 129529339 129529458 -67665974 + B1F SINE Alu 10 131 -18 7 1573 315 104 0 0 chr1 129529461 129529509 -67665923 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 7 1573 1114 256 42 64 chr1 129529515 129529874 -67665558 + MTE2a LTR MaLR 29 379 0 7 1573 937 212 259 14 chr1 129530281 129530415 -67665017 + ORR1D1 LTR MaLR 5 165 -209 7 1573 192 40 0 0 chr1 129530415 129530440 -67664992 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1573 937 212 259 14 chr1 129530440 129530602 -67664830 + ORR1D1 LTR MaLR 166 373 -1 7 1573 1358 167 20 4 chr1 129530602 129530855 -67664577 + ORR1D1-int LTR MaLR 1 257 -1113 7 1573 652 248 6 13 chr1 129530915 129531074 -67664358 + ORR1D1 LTR MaLR 1 158 -216 7 1573 207 0 0 0 chr1 129531074 129531097 -67664335 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1573 4541 214 82 12 chr1 129531166 129531623 -67663809 + ORR1D1-int LTR MaLR 277 752 -618 7 1573 1575 179 112 59 chr1 129531623 129531979 -67663453 + ORR1C1 LTR MaLR 1 375 -3 8 1573 4541 214 82 12 chr1 129531979 129532543 -67662889 + ORR1D1-int LTR MaLR 753 1370 0 7 1573 1352 170 91 152 chr1 129532545 129532940 -67662492 + ORR1D1 LTR MaLR 3 373 -1 7 1573 570 244 62 0 chr1 129532942 129533016 -67662416 + ID_B1 SINE B4 55 138 -86 8 1573 414 0 0 0 chr1 129533016 129533062 -67662370 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 8 1573 570 244 62 0 chr1 129533062 129533147 -67662285 + ID_B1 SINE B4 139 223 -1 8 1573 285 281 49 0 chr1 129533146 129533228 -67662204 - MER63B DNA AcHobo -43 393 308 8 1573 213 39 0 0 chr1 129533495 129533521 -67661911 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 8 1573 568 259 47 70 chr1 129533598 129533855 -67661577 - L1MB8 LINE L1 -24 6154 5904 8 1573 639 0 0 0 chr1 129533895 129533966 -67661466 + (GA)n Simple_repeat Simple_repeat 2 72 0 8 1573 606 286 20 7 chr1 129534031 129534179 -67661253 + B4 SINE B4 131 280 -12 8 1573 285 315 8 0 chr1 129534189 129534316 -67661116 + (CA)n Simple_repeat Simple_repeat 1 128 0 8 1573 22 0 0 0 chr1 129535157 129535179 -67660253 + AT_rich Low_complexity Low_complexity 1 22 0 9 1573 1578 220 47 17 chr1 129535193 129535554 -67659878 - MTEb LTR MaLR -2 377 6 9 1573 355 277 0 0 chr1 129535949 129536032 -67659400 + MER31A LTR ERV1 1 83 -402 9 1573 931 226 49 0 chr1 129536315 129536519 -67658913 - ID_B1 SINE B4 -6 218 5 9 1573 208 234 0 0 chr1 129536623 129536670 -67658762 + L2b LINE L2 3329 3375 0 9 1573 490 279 29 35 chr1 129537134 129537305 -67658127 - RMER15 LTR ERVL 0 575 406 9 1573 543 254 46 0 chr1 129537336 129537466 -67657966 - ID_B1 SINE B4 -64 160 25 9 1573 760 86 17 0 chr1 129538173 129538290 -67657142 + URR1A DNA MER1_type 81 199 -27 9 1573 1239 233 97 22 chr1 129538300 129538660 -67656772 + MTD LTR MaLR 33 419 0 9 1573 521 302 89 54 chr1 129538684 129538943 -67656489 + B4 SINE B4 2 269 -23 9 1573 183 129 0 0 chr1 129538955 129538986 -67656446 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1573 213 139 0 27 chr1 129538993 129539030 -67656402 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1 1573 248 72 53 18 chr1 129539579 129539636 -67655796 + (TCTCCC)n Simple_repeat Simple_repeat 2 60 0 1 1573 387 0 0 0 chr1 129539787 129539830 -67655602 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1573 378 310 7 65 chr1 129540431 129540569 -67654863 + RMER10B LTR ERVL 269 398 0 1 1573 261 98 0 0 chr1 129540687 129540728 -67654704 + (CCA)n Simple_repeat Simple_repeat 2 42 0 1 1573 617 231 58 175 chr1 129540959 129541258 -67654174 + B4 SINE B4 7 269 -23 1 1573 270 0 0 0 chr1 129541258 129541288 -67654144 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1573 340 279 0 0 chr1 129541637 129541716 -67653716 + ID4 SINE ID 5 83 0 1 1573 367 264 0 11 chr1 129541737 129541829 -67653603 + B4 SINE B4 3 93 -199 1 1573 320 310 176 21 chr1 129541832 129542020 -67653412 + B4A SINE B4 1 217 -75 1 1573 1380 207 63 51 chr1 129542012 129542440 -67652992 + RMER10A LTR ERVL 7 439 -3 1 1573 688 273 5 62 chr1 129542540 129542751 -67652681 + B4 SINE B4 90 288 -4 1 1573 195 42 0 0 chr1 129542794 129542818 -67652614 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1573 224 274 105 23 chr1 129543471 129543557 -67651875 + PB1D7 SINE Alu 2 94 -26 1 1573 576 264 124 0 chr1 129543750 129543943 -67651489 - ID_B1 SINE B4 -3 221 5 1 1573 556 279 127 6 chr1 129543965 129544138 -67651294 - B3A SINE B2 -4 194 1 1 1573 671 218 56 25 chr1 129544303 129544463 -67650969 + B3 SINE B2 50 214 -2 1 1573 362 240 62 0 chr1 129544506 129544602 -67650830 + B4A SINE B4 123 224 -68 1 1573 684 239 0 7 chr1 129544612 129544751 -67650681 + B1_Mur1 SINE Alu 1 138 -11 1 1573 246 32 0 0 chr1 129544751 129544782 -67650650 + (ATG)n Simple_repeat Simple_repeat 3 33 0 1 1573 342 0 0 0 chr1 129545463 129545501 -67649931 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1573 467 272 23 201 chr1 129545520 129545874 -67649558 + B4A SINE B4 2 292 0 1 1573 494 145 0 9 chr1 129545884 129545995 -67649437 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1573 3632 219 35 35 chr1 129546716 129547620 -67647812 - MTC-int LTR MaLR -308 950 47 1 1573 1075 201 208 0 chr1 129547641 129547930 -67647502 - MTD LTR MaLR 0 419 71 1 1573 381 211 102 34 chr1 129548013 129548131 -67647301 + B4 SINE B4 4 129 -163 1 1573 635 259 7 0 chr1 129548752 129548887 -67646545 + B1F SINE Alu 5 140 -9 1 1573 189 363 58 12 chr1 129549299 129549472 -67645960 + MIRb SINE MIR 80 260 -8 1 1573 256 232 61 0 chr1 129549584 129549666 -67645766 - MTEa LTR MaLR -7 372 286 1 1573 2144 163 36 58 chr1 129549782 129550198 -67645234 - MTB_Mm LTR MaLR 0 407 1 1 1573 267 266 37 37 chr1 129550448 129550530 -67644902 - MTD LTR MaLR -288 82 1 1 1573 355 284 55 88 chr1 129551324 129551594 -67643838 + L1MC4 LINE L1 1451 1708 -4603 1 1573 676 288 68 5 chr1 129551933 129552125 -67643307 + ID_B1 SINE B4 3 206 -18 1 1573 26 0 0 0 chr1 129552618 129552644 -67642788 + AT_rich Low_complexity Low_complexity 1 26 0 1 1573 267 231 147 62 chr1 129553400 129553529 -67641903 + B4A SINE B4 4 143 -149 1 1573 378 0 0 0 chr1 129553647 129553689 -67641743 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1573 399 21 0 0 chr1 129553999 129554047 -67641385 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1573 379 213 44 44 chr1 129554111 129554224 -67641208 + B3A SINE B2 28 140 -58 1 1573 591 94 0 0 chr1 129554224 129554320 -67641112 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1573 745 177 14 28 chr1 129554430 129554575 -67640857 + B1_Mur3 SINE Alu 2 144 -5 1 1573 335 89 0 18 chr1 129554586 129554643 -67640789 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1573 180 176 0 0 chr1 129554891 129554925 -67640507 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1573 437 191 14 58 chr1 129554937 129555076 -67640356 + Lx9 LINE L1 7512 7644 0 1 1573 613 192 16 0 chr1 129555095 129555220 -67640212 + RSINE1 SINE B4 3 129 -36 1 1573 261 0 0 0 chr1 129555230 129555259 -67640173 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1573 720 202 157 75 chr1 129555622 129555889 -67639543 - B4 SINE B4 -3 289 1 1 1573 850 200 53 16 chr1 129556331 129556519 -67638913 - B2_Mm2 SINE B2 0 195 1 1 1573 821 323 22 81 chr1 129556576 129556669 -67638763 + MLT1B LTR MaLR 8 81 -309 1 1573 396 275 77 39 chr1 129556669 129556824 -67638608 - RSINE1 SINE B4 -2 163 3 1 1573 821 323 22 81 chr1 129556824 129557090 -67638342 + MLT1B LTR MaLR 82 346 -44 1 1573 314 210 0 0 chr1 129557165 129557227 -67638205 - B3A SINE B2 -136 62 1 1 1573 724 251 23 17 chr1 129557248 129557422 -67638010 - ID_B1 SINE B4 -49 175 1 1 1573 501 17 0 0 chr1 129557440 129557498 -67637934 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1573 364 304 9 0 chr1 129558541 129558653 -67636779 + PB1D10 SINE Alu 1 113 -4 1 1573 572 281 73 69 chr1 129558655 129558873 -67636559 + B4A SINE B4 2 220 -72 1 1573 415 60 30 0 chr1 129558874 129558941 -67636491 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1573 204 240 0 0 chr1 129558943 129558993 -67636439 + A-rich Low_complexity Low_complexity 2 51 0 1 1573 474 33 0 0 chr1 129559720 129559780 -67635652 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1573 563 154 182 0 chr1 129560564 129560674 -67634758 + B1_Mur4 SINE Alu 2 131 -19 1 1573 313 292 41 10 chr1 129560683 129560780 -67634652 - PB1D7 SINE Alu -18 102 3 1 1573 21 36 0 0 chr1 129561125 129561153 -67634279 + AT_rich Low_complexity Low_complexity 1 28 0 1 1573 770 251 67 67 chr1 129561167 129561376 -67634056 + B3 SINE B2 5 213 -3 1 1573 692 229 21 21 chr1 129561555 129561698 -67633734 - B1_Mur1 SINE Alu 0 149 7 1 1573 821 295 38 14 chr1 129561703 129561913 -67633519 - B4 SINE B4 -64 228 14 1 1573 1409 256 44 3 chr1 129562046 129562410 -67633022 + MTE2b LTR MaLR 1 379 0 1 1573 798 287 65 39 chr1 129562821 129563100 -67632332 + B4A SINE B4 7 292 0 1 1573 641 257 80 48 chr1 129563276 129563464 -67631968 + B3A SINE B2 5 198 0 1 1573 22 35 0 0 chr1 129564361 129564390 -67631042 + AT_rich Low_complexity Low_complexity 1 29 0 1 1573 22 0 0 0 chr1 129565101 129565123 -67630309 + AT_rich Low_complexity Low_complexity 1 22 0 1 1573 271 329 96 8 chr1 129565425 129565580 -67629852 + MER102a DNA MER1_type 1 173 -158 1 1573 945 296 69 9 chr1 129565980 129566212 -67629220 + B4 SINE B4 44 289 -3 1 1573 252 0 0 0 chr1 129566233 129566261 -67629171 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1573 441 0 0 0 chr1 129566261 129566309 -67629123 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1573 344 225 14 14 chr1 129566526 129566598 -67628834 + B3A SINE B2 8 79 -119 1 1573 943 144 14 0 chr1 129566641 129566787 -67628645 + B1_Mus1 SINE Alu 1 148 0 1 1573 937 250 24 0 chr1 129567181 129567393 -67628039 + ID_B1 SINE B4 1 217 -7 1 1573 446 171 32 0 chr1 129567455 129567578 -67627854 + GA-rich Low_complexity Low_complexity 2 128 0 1 1573 360 240 0 0 chr1 129567964 129568118 -67627314 + (TG)n Simple_repeat Simple_repeat 1 154 0 1 1573 1047 237 44 15 chr1 129568127 129568401 -67627031 - B4 SINE B4 -8 284 3 1 1573 345 273 137 50 chr1 129568426 129568565 -67626867 - LTR48 LTR ERV1 -627 160 10 1 1573 968 129 0 21 chr1 129568610 129568752 -67626680 + B1_Mur2 SINE Alu 1 139 -10 1 1573 867 243 48 0 chr1 129569019 129569225 -67626207 + ID_B1 SINE B4 1 216 -8 1 1573 703 273 126 10 chr1 129569493 129569700 -67625732 + B4A SINE B4 8 238 -54 1 1573 657 204 101 36 chr1 129569703 129569871 -67625561 + Lx9 LINE L1 7181 7359 -285 1 1573 414 0 0 0 chr1 129569871 129569917 -67625515 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1573 342 0 0 0 chr1 129569917 129569954 -67625478 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1573 702 241 183 47 chr1 129570528 129570785 -67624647 + B4 SINE B4 1 292 0 1 1573 401 276 28 19 chr1 129571223 129571330 -67624102 - B1F SINE Alu -40 109 2 1 1573 1172 89 0 6 chr1 129571537 129571718 -67623714 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1573 27 0 0 0 chr1 129573660 129573687 -67621745 + AT_rich Low_complexity Low_complexity 1 27 0 1 1573 25 83 0 0 chr1 129574096 129574156 -67621276 + GC_rich Low_complexity Low_complexity 1 60 0 1 1573 297 0 0 0 chr1 129575579 129575612 -67619820 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1573 414 0 0 0 chr1 129575612 129575657 -67619775 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1573 189 132 0 0 chr1 129575745 129575783 -67619649 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1573 285 305 88 44 chr1 129576660 129576842 -67618590 + MER20B DNA MER1_type 200 389 -394 1 1573 189 0 0 0 chr1 129576892 129576913 -67618519 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1573 264 316 114 7 chr1 129577051 129577191 -67618241 + MER20B DNA MER1_type 515 669 -114 1 1573 893 81 16 0 chr1 129577298 129577422 -67618010 - B1_Mus1 SINE Alu -20 128 3 1 1573 1461 122 13 22 chr1 129577427 129577654 -67617778 + URR1B DNA MER1_type 1 225 0 1 1573 523 242 54 84 chr1 129577663 129577830 -67617602 + B3A SINE B2 36 197 -1 1 1573 755 266 18 59 chr1 129578033 129578253 -67617179 - ID_B1 SINE B4 0 224 14 1 1573 506 57 14 0 chr1 129578705 129578775 -67616657 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1573 239 223 147 78 chr1 129578834 129578936 -67616496 - B4 SINE B4 -182 110 2 1 1573 1295 60 46 56 chr1 129578962 129579157 -67616275 - B2_Mm2 SINE B2 -1 194 2 2 1573 583 53 0 0 chr1 129579160 129579235 -67616197 - B1_Mus1 SINE Alu -73 75 1 2 1573 314 333 65 65 chr1 129579297 129579370 -67616062 + MTE2a LTR MaLR 1 75 -304 2 1573 1028 164 111 34 chr1 129579370 129579578 -67615854 + URR1A DNA MER1_type 1 224 -2 2 1573 314 333 65 65 chr1 129579578 129579690 -67615742 + MTE2a LTR MaLR 76 186 -193 2 1573 961 86 29 0 chr1 129579696 129579835 -67615597 + B1_Mus1 SINE Alu 6 148 0 2 1573 929 219 27 59 chr1 129579854 129580073 -67615359 + MTE2a LTR MaLR 168 379 0 2 1573 432 279 152 14 chr1 129580073 129580211 -67615221 + MER2B DNA MER2_type 180 336 0 2 1573 609 225 54 8 chr1 129580231 129580361 -67615071 + RSINE1 SINE B4 2 137 -28 2 1573 1320 259 38 46 chr1 129580414 129580641 -67614791 - ORR1D2 LTR MaLR 0 370 154 2 1573 1166 189 142 102 chr1 129580641 129580821 -67614611 - RMER17C LTR ERVK 0 410 181 2 1573 513 0 0 0 chr1 129580821 129580878 -67614554 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1573 1166 189 142 102 chr1 129580878 129581091 -67614341 - RMER17C LTR ERVK -230 180 1 2 1573 1320 259 38 46 chr1 129581091 129581235 -67614197 - ORR1D2 LTR MaLR -217 153 2 2 1573 738 214 0 0 chr1 129581235 129581366 -67614066 - B1_Mur1 SINE Alu -15 134 4 2 1573 693 321 45 41 chr1 129581532 129581889 -67613543 - ORR1E LTR MaLR 0 379 1 2 1573 318 308 13 0 chr1 129581898 129581976 -67613456 + MER81 DNA AcHobo 34 112 -2 2 1573 824 293 5 0 chr1 129582010 129582208 -67613224 + ID_B1 SINE B4 14 212 -12 2 1573 206 194 203 31 chr1 129582286 129582350 -67613082 + MER5B DNA MER1_type 98 172 -6 2 1573 1013 140 0 0 chr1 129582664 129582814 -67612618 - B1_Mur4 SINE Alu 0 150 1 2 1573 488 240 10 0 chr1 129582815 129582911 -67612521 - B4A SINE B4 -195 97 1 2 1573 641 298 106 67 chr1 129583177 129583432 -67612000 + B4A SINE B4 8 272 -20 2 1573 324 0 0 0 chr1 129583461 129583497 -67611935 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1573 400 310 57 53 chr1 129583788 129584016 -67611416 + RMER15 LTR ERVL 347 575 0 2 1573 306 354 88 32 chr1 129584085 129584301 -67611131 + L1M4 LINE L1 4807 5034 -1112 2 1573 377 350 140 16 chr1 129584569 129584676 -67610756 - Lx9 LINE L1 -2 7471 7354 2 1573 270 0 0 0 chr1 129584676 129584706 -67610726 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1573 1075 275 109 14 chr1 129584706 129585077 -67610355 - Lx9 LINE L1 -182 7462 7048 2 1573 291 296 50 30 chr1 129585127 129585228 -67610204 + PB1D10 SINE Alu 15 117 0 2 1573 416 274 8 49 chr1 129585400 129585523 -67609909 + PB1D9 SINE Alu 2 119 -1 2 1573 2375 154 70 41 chr1 129585544 129586057 -67609375 + RLTR11A LTR ERVK 1 528 0 2 1573 204 179 0 0 chr1 129586474 129586513 -67608919 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2 1573 301 327 0 18 chr1 129586545 129586654 -67608778 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 2 1573 1536 22 0 0 chr1 129587190 129587370 -67608062 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1573 348 161 0 0 chr1 129587372 129587434 -67607998 + CT-rich Low_complexity Low_complexity 3 64 0 2 1573 9563 80 11 10 chr1 129587435 129589485 -67605947 - L1_Mus2 LINE L1 -1 6653 4519 2 1573 1675 241 16 11 chr1 129589613 129589978 -67605454 + MTEb LTR MaLR 3 369 -10 2 1573 538 209 17 17 chr1 129590579 129590696 -67604736 + PB1D10 SINE Alu 1 117 0 2 1573 346 297 0 11 chr1 129590716 129590808 -67604624 - RMER5 LTR ERV1 -8 526 436 2 1573 1484 238 60 20 chr1 129590828 129591231 -67604201 - RMER5 LTR ERV1 -77 457 39 2 1573 203 191 16 0 chr1 129591609 129591672 -67603760 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1573 513 262 23 81 chr1 129591672 129591846 -67603586 - RSINE1 SINE B4 0 165 2 2 1573 354 45 0 0 chr1 129592766 129592810 -67602622 + (CATA)n Simple_repeat Simple_repeat 4 47 0 2 1573 559 343 131 22 chr1 129592812 129593217 -67602215 - MLT1D LTR MaLR -53 452 4 2 1573 417 206 0 18 chr1 129593437 129593480 -67601952 + polypyrimidine Low_complexity Low_complexity 119 161 0 2 1573 651 65 0 0 chr1 129593480 129593573 -67601859 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1573 417 206 0 18 chr1 129593573 129593692 -67601740 + CT-rich Low_complexity Low_complexity 3 118 0 2 1573 509 259 76 60 chr1 129593712 129593897 -67601535 - ID_B1 SINE B4 -21 203 16 2 1573 21 57 0 0 chr1 129594132 129594167 -67601265 + AT_rich Low_complexity Low_complexity 1 35 0 2 1573 190 232 0 82 chr1 129594219 129594280 -67601152 + L3b LINE CR1 228 283 -199 2 1573 825 231 58 39 chr1 129594777 129594799 -67600633 - B3 SINE B2 -4 212 192 2 1573 198 0 0 0 chr1 129594799 129594821 -67600611 + (TGG)n Simple_repeat Simple_repeat 3 24 0 2 1573 825 231 58 39 chr1 129594821 129595005 -67600427 - B3 SINE B2 -25 191 2 2 1573 3479 205 140 11 chr1 129595083 129595646 -67599786 - Lx6 LINE L1 -40 7420 6781 2 1573 2244 112 0 65 chr1 129595646 129595998 -67599434 - ORR1A4 LTR MaLR 0 329 1 2 1573 3479 205 140 11 chr1 129595998 129596234 -67599198 - Lx6 LINE L1 -680 6780 6518 2 1573 244 265 62 68 chr1 129596326 129596472 -67598960 + YREP_Mm Unknown Unknown 150 294 -1518 2 1573 710 260 24 34 chr1 129596357 129596564 -67598868 - ID_B1 SINE B4 -8 216 12 2 1573 530 224 26 0 chr1 129596640 129596756 -67598676 + B1F SINE Alu 28 146 -3 2 1573 614 233 23 0 chr1 129596863 129596992 -67598440 + B1_Mur2 SINE Alu 5 136 -13 2 1573 222 37 0 0 chr1 129596996 129597023 -67598409 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2 1573 372 277 11 0 chr1 129597214 129597307 -67598125 + MTD LTR MaLR 117 210 -209 2 1573 551 197 180 0 chr1 129597307 129597429 -67598003 + B3 SINE B2 2 145 -71 2 1573 369 0 0 0 chr1 129597430 129597471 -67597961 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1573 492 246 8 60 chr1 129597621 129597748 -67597684 + RSINE1 SINE B4 1 120 -45 2 1573 2807 30 0 21 chr1 129597748 129598082 -67597350 - IAPLTR2b LTR ERVK 0 327 1 2 1573 1144 207 0 33 chr1 129598403 129598624 -67596808 + B4 SINE B4 3 213 -79 2 1573 822 150 20 13 chr1 129598624 129598773 -67596659 + B1_Mur4 SINE Alu 1 150 0 2 1573 949 270 16 72 chr1 129598773 129598858 -67596574 + B4A SINE B4 214 292 0 2 1573 787 278 17 0 chr1 129598906 129599086 -67596346 - B3A SINE B2 -14 184 2 2 1573 721 301 156 17 chr1 129599154 129599391 -67596041 - MER82 DNA MER2_type -1 652 383 2 1573 255 278 85 122 chr1 129599401 129599426 -67596006 - B2_Mm2 SINE B2 -11 184 150 2 1573 699 90 0 0 chr1 129599426 129599526 -67595906 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 1573 533 258 46 52 chr1 129599526 129599599 -67595833 - B3A SINE B2 -45 153 90 2 1573 4172 46 14 2 chr1 129599599 129600096 -67595336 - RLTR1C LTR ERV1 0 503 1 2 1573 533 254 39 39 chr1 129600096 129600160 -67595272 - B3A SINE B2 -108 90 27 2 1573 779 175 225 12 chr1 129600193 129600366 -67595066 - B3 SINE B2 -5 211 2 2 1573 2818 76 13 0 chr1 129600391 129600772 -67594660 - L1_Mus1 LINE L1 0 6567 6182 2 1573 405 0 0 0 chr1 129600813 129600858 -67594574 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1573 279 0 0 0 chr1 129600858 129600888 -67594544 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1573 337 234 88 38 chr1 129600920 129601000 -67594432 - B3A SINE B2 -77 121 38 2 1573 345 274 47 9 chr1 129601006 129601113 -67594319 - MER82 DNA MER2_type -254 399 289 2 1573 814 178 20 14 chr1 129601391 129601539 -67593893 - B1_Mur4 SINE Alu 0 150 2 2 1573 1001 212 43 50 chr1 129601539 129601788 -67593644 + B4A SINE B4 46 292 0 2 1573 746 193 14 14 chr1 129602104 129602251 -67593181 + B1_Mur4 SINE Alu 2 148 -2 2 1573 226 343 0 0 chr1 129602327 129602394 -67593038 + MER5B DNA MER1_type 2 68 -110 2 1573 605 267 60 0 chr1 129602610 129602760 -67592672 + RSINE1 SINE B4 3 161 -4 2 1573 485 120 0 11 chr1 129603236 129603329 -67592103 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1573 348 24 0 0 chr1 129603331 129603372 -67592060 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1573 2135 181 40 3 chr1 129603417 129603794 -67591638 + ORR1B1 LTR MaLR 1 391 -3 2 1573 1382 182 0 0 chr1 129603809 129604045 -67591387 + ORR1B1-int LTR MaLR 9 244 -1265 2 1573 1569 114 0 9 chr1 129604045 129604276 -67591156 - L1_Mm LINE L1 -739 5144 4916 2 1573 7890 46 9 7 chr1 129604271 129605194 -67590238 + L1_Mus1 LINE L1 5467 6397 -170 2 1573 3431 38 2 0 chr1 129605194 129605589 -67589843 + MTA_Mm LTR MaLR 1 396 0 2 1573 7890 38 8 8 chr1 129605589 129605722 -67589710 + L1_Mus1 LINE L1 6398 6524 -43 2 1573 882 242 5 42 chr1 129605722 129605953 -67589479 + ORR1B1-int LTR MaLR 229 404 -1559 2 1573 1307 69 0 17 chr1 129605969 129606146 -67589286 - L1_Mur1 LINE L1 -3439 2447 2274 2 1573 7878 37 2 5 chr1 129606150 129607091 -67588341 - L1Md_F2 LINE L1 0 6582 5645 2 1573 2610 96 18 0 chr1 129607083 129607469 -67587963 - L1_Mur1 LINE L1 -3591 2295 1903 2 1573 4593 78 23 0 chr1 129607469 129608069 -67587363 + Lx3_Mus LINE L1 6396 7009 0 2 1573 3628 181 99 61 chr1 129608079 129609803 -67585629 + ORR1B1-int LTR MaLR 2 1779 -13 2 1573 338 260 69 17 chr1 129609804 129609932 -67585500 + L1MA4A LINE L1 5780 5930 -373 2 1573 928 206 85 21 chr1 129610079 129610268 -67585164 - B3 SINE B2 -2 214 14 2 1573 491 213 0 41 chr1 129610290 129610388 -67585044 - B3 SINE B2 -1 215 122 2 1573 2014 140 82 0 chr1 129610392 129610720 -67584712 - ORR1B2 LTR MaLR -8 359 5 2 1573 631 191 18 0 chr1 129610732 129610842 -67584590 - B3 SINE B2 -101 115 4 2 1573 1975 129 58 85 chr1 129610849 129611213 -67584219 + ORR1B1 LTR MaLR 41 394 0 2 1573 332 271 0 14 chr1 129611534 129611605 -67583827 + B4 SINE B4 221 290 -2 2 1573 260 262 221 0 chr1 129611859 129611981 -67583451 + B3 SINE B2 3 151 -65 2 1573 432 0 0 0 chr1 129612141 129612189 -67583243 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1573 518 189 0 22 chr1 129612289 129612381 -67583051 - B3 SINE B2 -125 91 2 2 1573 320 319 11 0 chr1 129612381 129612474 -67582958 - MTD LTR MaLR -209 210 117 2 1573 2185 137 27 25 chr1 129612486 129612909 -67582523 - ORR1A2 LTR MaLR -8 411 3 2 1573 698 280 158 12 chr1 129613484 129613737 -67581695 - B4 SINE B4 0 292 3 2 1573 814 292 42 39 chr1 129614089 129614374 -67581058 + B4A SINE B4 3 288 -4 2 1573 711 305 33 14 chr1 129614760 129614973 -67580459 - B4A SINE B4 -62 230 14 2 1573 1761 212 47 27 chr1 129615089 129615481 -67579951 + MTD LTR MaLR 3 404 -15 2 1573 225 0 0 0 chr1 129615481 129615506 -67579926 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1573 2031 199 42 86 chr1 129615515 129615880 -67579552 + RLTR20A2 LTR ERVK 1 363 -215 3 1573 6698 6 0 0 chr1 129615880 129616608 -67578824 + L1Md_T LINE L1 5855 6582 0 3 1573 2031 199 42 86 chr1 129616608 129616691 -67578741 + RLTR20A2 LTR ERVK 364 445 -133 3 1573 1145 76 0 0 chr1 129616691 129616835 -67578597 + B1_Mus2 SINE Alu 2 145 -2 3 1573 2031 216 50 75 chr1 129616835 129616982 -67578450 + RLTR20A2 LTR ERVK 407 563 0 3 1573 304 246 43 60 chr1 129617260 129617377 -67578055 - MIR SINE MIR -47 215 101 3 1573 201 68 68 0 chr1 129617385 129617429 -67578003 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 3 1573 570 15 0 0 chr1 129617431 129617498 -67577934 + (GAAA)n Simple_repeat Simple_repeat 4 70 0 3 1573 939 207 145 44 chr1 129617649 129617722 -67577710 + MTE2b LTR MaLR 68 135 -244 3 1573 2086 131 64 3 chr1 129617722 129618068 -67577364 - ORR1B2 LTR MaLR 0 367 1 3 1573 939 207 145 44 chr1 129618068 129618242 -67577190 + MTE2b LTR MaLR 136 340 -39 3 1573 4195 59 121 0 chr1 129619017 129619573 -67575859 + L1_Mus3 LINE L1 6009 6631 -7 3 1573 1573 48 0 21 chr1 129620426 129620617 -67574815 + B2_Mm1a SINE B2 2 188 -5 3 1573 1236 41 0 0 chr1 129620792 129620939 -67574493 - B1_Mus2 SINE Alu 0 147 1 3 1573 244 172 125 0 chr1 129621601 129621665 -67573767 + L2c LINE L2 3309 3380 -7 3 1573 541 269 73 17 chr1 129622193 129622371 -67573061 + ID_B1 SINE B4 36 223 -1 3 1573 23 33 0 0 chr1 129622417 129622447 -67572985 + AT_rich Low_complexity Low_complexity 1 30 0 3 1573 332 290 42 36 chr1 129622449 129622617 -67572815 - RLTR11A2 LTR ERVK -26 427 259 3 1573 716 263 35 35 chr1 129622707 129622967 -67572465 - RLTR11A2 LTR ERVK -267 260 1 3 1573 407 290 61 8 chr1 129622968 129623100 -67572332 + ID_B1 SINE B4 86 224 0 3 1573 227 331 45 8 chr1 129623111 129623245 -67572187 - L1MEd LINE L1 -5975 144 6 3 1573 184 234 125 0 chr1 129623528 129623592 -67571840 + L2c LINE L2 3316 3387 0 3 1573 342 115 0 0 chr1 129623595 129623647 -67571785 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 3 1573 1103 183 0 133 chr1 129623870 129624110 -67571322 + B3 SINE B2 2 209 -7 3 1573 851 163 0 22 chr1 129624204 129624342 -67571090 + B1_Mur3 SINE Alu 3 137 -12 3 1573 396 0 0 0 chr1 129624342 129624386 -67571046 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1573 506 313 22 0 chr1 129624607 129624731 -67570701 - ID_B1 SINE B4 -2 222 96 3 1573 4677 108 5 18 chr1 129624731 129625608 -67569824 + RLTR13D2 LTR ERVK 1 1023 0 3 1573 382 266 11 0 chr1 129625611 129625705 -67569727 - ID_B1 SINE B4 -129 95 1 3 1573 22 35 0 0 chr1 129625798 129625827 -67569605 + AT_rich Low_complexity Low_complexity 1 29 0 3 1573 240 278 56 0 chr1 129626752 129626824 -67568608 + ID SINE ID 1 76 -148 3 1573 270 0 0 0 chr1 129626887 129626917 -67568515 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1573 531 0 0 0 chr1 129626917 129626975 -67568457 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1573 270 217 0 0 chr1 129627206 129627275 -67568157 + GA-rich Low_complexity Low_complexity 1 69 0 3 1573 732 221 138 5 chr1 129627519 129627715 -67567717 + ID_B1 SINE B4 3 224 0 3 1573 180 97 0 0 chr1 129628100 129628131 -67567301 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 1573 3016 224 115 41 chr1 129628279 129628708 -67566724 - RCHARR1 DNA MER1_type -4 970 483 3 1573 950 236 42 5 chr1 129628708 129628921 -67566511 - ID_B1 SINE B4 -2 222 2 3 1573 3016 224 115 41 chr1 129628921 129629387 -67566045 - RCHARR1 DNA MER1_type -492 482 9 3 1573 386 271 274 14 chr1 129629544 129629832 -67565600 + MLT1A0 LTR MaLR 3 365 0 3 1573 539 29 14 0 chr1 129629915 129629984 -67565448 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1573 300 248 36 98 chr1 129630033 129630145 -67565287 - PB1D10 SINE Alu -11 106 2 3 1574 738 294 60 21 chr1 129630837 129631070 -67564362 + B4 SINE B4 49 290 -2 3 1574 387 0 0 0 chr1 129631590 129631633 -67563799 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1574 868 224 70 20 chr1 129631640 129631840 -67563592 - ID_B1 SINE B4 -5 219 10 3 1574 9122 113 66 3 chr1 129632228 129633626 -67561806 - Lx4A LINE L1 0 7058 5545 3 1574 636 272 233 21 chr1 129633648 129633888 -67561544 + B4 SINE B4 1 291 -1 3 1574 219 179 0 0 chr1 129633913 129633980 -67561452 + (TTG)n Simple_repeat Simple_repeat 3 69 0 3 1574 367 269 58 64 chr1 129633980 129633998 -67561434 - B4A SINE B4 -46 246 168 3 1574 818 133 30 0 chr1 129633998 129634133 -67561299 - B1_Mus2 SINE Alu 0 147 9 3 1574 367 269 58 64 chr1 129634133 129634151 -67561281 - B4A SINE B4 -46 167 77 3 1574 347 299 103 0 chr1 129634359 129634466 -67560966 - B4 SINE B4 -173 119 2 3 1574 227 309 43 14 chr1 129634595 129634664 -67560768 + ID_B1 SINE B4 82 152 -72 3 1574 281 197 81 16 chr1 129634606 129634668 -67560764 + PB1D10 SINE Alu 12 77 -40 3 1574 198 0 0 0 chr1 129634700 129634722 -67560710 + (TCC)n Simple_repeat Simple_repeat 3 24 0 3 1574 862 240 11 0 chr1 129634739 129634918 -67560514 - ID_B1 SINE B4 -42 182 2 3 1574 768 274 13 52 chr1 129635954 129636185 -67559247 + B4 SINE B4 3 224 -68 3 1574 681 181 0 0 chr1 129636190 129636323 -67559109 + GA-rich Low_complexity Low_complexity 3 135 0 3 1574 705 56 0 0 chr1 129636323 129636413 -67559019 + (GGAAA)n Simple_repeat Simple_repeat 2 91 0 3 1574 366 289 83 95 chr1 129636888 129637056 -67558376 + B4A SINE B4 9 174 -118 3 1574 295 284 36 36 chr1 129637138 129637222 -67558210 + RSINE1 SINE B4 82 165 0 3 1574 456 259 0 0 chr1 129637248 129637410 -67558022 + (CA)n Simple_repeat Simple_repeat 1 162 0 3 1574 476 285 7 37 chr1 129637718 129637853 -67557579 - ID_B1 SINE B4 -8 216 86 3 1574 228 258 22 22 chr1 129638270 129638361 -67557071 - MIR SINE MIR -41 221 131 3 1574 14618 74 24 3 chr1 129638372 129640993 -67554439 + L1VL2 LINE L1 309 2988 -627 3 1574 1216 108 34 11 chr1 129641015 129641192 -67554240 + B2_Mm2 SINE B2 1 181 -14 3 1574 30 27 0 0 chr1 129641256 129641293 -67554139 + AT_rich Low_complexity Low_complexity 1 37 0 3 1574 22 56 0 0 chr1 129641510 129641546 -67553886 + AT_rich Low_complexity Low_complexity 1 36 0 3 1574 24 32 0 0 chr1 129641755 129641786 -67553646 + AT_rich Low_complexity Low_complexity 1 31 0 3 1574 946 234 13 45 chr1 129642538 129642762 -67552670 - ID_B1 SINE B4 -7 217 1 3 1574 2634 144 86 26 chr1 129643027 129643525 -67551907 - RLTR11A LTR ERVK 0 528 1 3 1574 275 241 0 65 chr1 129643819 129643881 -67551551 + B4 SINE B4 24 81 -211 3 1574 6407 96 15 39 chr1 129643904 129644946 -67550486 - RLTR13D2 LTR ERVK 0 1023 7 3 1574 317 299 24 49 chr1 129644960 129645083 -67550349 + B4A SINE B4 36 155 -137 3 1574 318 50 0 0 chr1 129646114 129646154 -67549278 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1574 382 179 0 0 chr1 129646257 129646324 -67549108 + B1F SINE Alu 75 141 -8 3 1574 214 244 35 35 chr1 129646391 129646476 -67548956 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 3 1574 966 226 34 86 chr1 129647802 129647866 -67547566 - B4A SINE B4 -14 278 227 3 1574 842 242 14 14 chr1 129647866 129648076 -67547356 - B3 SINE B2 -5 211 2 3 1574 966 226 34 86 chr1 129648076 129648302 -67547130 - B4A SINE B4 -66 226 3 3 1574 336 162 39 0 chr1 129648846 129648931 -67546501 - MTD LTR MaLR -15 406 320 3 1574 766 170 14 7 chr1 129648905 129649047 -67546385 - MTD LTR MaLR -263 156 14 3 1574 243 0 0 0 chr1 129649047 129649074 -67546358 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1574 315 0 0 0 chr1 129649413 129649448 -67545984 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3 1574 316 273 13 0 chr1 129649450 129649527 -67545905 - B1F1 SINE Alu -7 142 65 3 1574 907 322 4 34 chr1 129649771 129650038 -67545394 + B4 SINE B4 18 276 -16 3 1574 492 105 0 0 chr1 129650052 129650128 -67545304 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1574 606 201 161 29 chr1 129650603 129650777 -67544655 - RMER15 LTR ERVL -350 225 29 3 1574 1102 166 90 35 chr1 129651038 129651223 -67544209 - RMER17C LTR ERVK 0 410 212 3 1574 315 0 0 0 chr1 129651223 129651258 -67544174 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1574 1102 166 90 35 chr1 129651258 129651384 -67544048 - RMER17C LTR ERVK -199 211 83 3 1574 306 0 0 0 chr1 129651457 129651491 -67543941 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1574 219 275 11 32 chr1 129652168 129652262 -67543170 + GA-rich Low_complexity Low_complexity 6 97 0 3 1574 463 202 0 0 chr1 129652780 129652864 -67542568 + BC1_Mm scRNA scRNA 1 84 -68 3 1574 1120 59 0 0 chr1 129653852 129653987 -67541445 + B1_Mus2 SINE Alu 1 135 -12 3 1574 591 15 0 0 chr1 129654133 129654201 -67541231 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1574 374 302 31 8 chr1 129654739 129654866 -67540566 - MLT1B LTR MaLR -67 323 194 3 1574 325 189 26 51 chr1 129654958 129655036 -67540396 - B4 SINE B4 -2 290 215 3 1574 322 137 260 0 chr1 129655267 129655340 -67540092 + B1_Mm SINE Alu 37 128 -19 3 1574 729 246 40 45 chr1 129655402 129655602 -67539830 - B4A SINE B4 -88 204 6 3 1574 713 171 116 0 chr1 129655714 129655843 -67539589 + B1_Mur4 SINE Alu 2 145 -5 3 1574 321 135 0 0 chr1 129655844 129655896 -67539536 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1574 477 292 38 54 chr1 129655914 129656124 -67539308 - B3A SINE B2 0 216 1 3 1574 312 206 57 22 chr1 129656128 129656241 -67539191 - B1F SINE Alu -4 145 33 3 1574 226 296 123 12 chr1 129656752 129656923 -67538509 - Lx7 LINE L1 0 7696 7507 3 1574 342 0 0 0 chr1 129657031 129657069 -67538363 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1574 670 100 0 0 chr1 129657111 129657211 -67538221 + B2_Mm2 SINE B2 3 102 -93 3 1574 919 194 33 43 chr1 129657541 129657799 -67537633 - MTE2a LTR MaLR 0 419 174 3 1574 1397 231 90 12 chr1 129658199 129658545 -67536887 - MTE2b LTR MaLR -4 375 3 3 1574 22 0 0 0 chr1 129658831 129658853 -67536579 + AT_rich Low_complexity Low_complexity 1 22 0 3 1574 795 220 25 25 chr1 129658867 129659063 -67536369 - B3A SINE B2 0 198 3 3 1574 1873 152 82 3 chr1 129659409 129659765 -67535667 + ORR1C2 LTR MaLR 1 384 0 4 1574 396 103 0 0 chr1 129660158 129660216 -67535216 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1574 363 23 0 0 chr1 129660700 129660744 -67534688 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1574 407 259 304 10 chr1 129660746 129660943 -67534489 - B4A SINE B4 -35 257 3 4 1574 460 194 91 10 chr1 129660965 129661064 -67534368 - PB1D9 SINE Alu -11 109 3 4 1574 336 48 0 0 chr1 129661101 129661143 -67534289 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1574 24 67 0 0 chr1 129661288 129661333 -67534099 + AT_rich Low_complexity Low_complexity 1 45 0 4 1574 213 163 0 44 chr1 129661397 129661442 -67533990 - PB1D10 SINE Alu -2 115 73 4 1574 372 239 121 26 chr1 129661404 129661520 -67533912 - ID_B1 SINE B4 -7 217 91 4 1574 450 0 0 0 chr1 129661559 129661609 -67533823 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1574 288 0 0 0 chr1 129661609 129661640 -67533792 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1574 576 272 67 12 chr1 129661996 129662160 -67533272 + B4 SINE B4 61 233 -59 4 1574 230 157 164 41 chr1 129663036 129663109 -67532323 + PB1D7 SINE Alu 37 118 -2 4 1574 27 29 0 0 chr1 129663242 129663276 -67532156 + AT_rich Low_complexity Low_complexity 1 34 0 4 1574 636 209 27 48 chr1 129663651 129663797 -67531635 + B1_Mur2 SINE Alu 2 144 -5 4 1574 1358 75 16 21 chr1 129663805 129663996 -67531436 + B2_Mm2 SINE B2 3 192 -3 4 1574 547 279 76 71 chr1 129664720 129664903 -67530529 - MTEa LTR MaLR -94 285 93 4 1574 261 0 0 0 chr1 129664903 129664932 -67530500 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1574 974 70 70 0 chr1 129664932 129665060 -67530372 - B1_Mus1 SINE Alu -11 137 1 4 1574 547 279 76 71 chr1 129665060 129665099 -67530333 - MTEa LTR MaLR -287 92 62 4 1574 23 54 0 0 chr1 129665225 129665262 -67530170 + AT_rich Low_complexity Low_complexity 1 37 0 4 1574 231 246 0 71 chr1 129665355 129665425 -67530007 - ID_B1 SINE B4 -27 197 133 4 1574 251 220 46 126 chr1 129665804 129665955 -67529477 - ID_B1 SINE B4 -85 139 1 4 1574 723 308 97 20 chr1 129665987 129666328 -67529104 - MTE-int LTR MaLR -1038 542 176 4 1574 434 324 146 36 chr1 129666422 129666758 -67528674 - MTEa LTR MaLR -2 377 5 4 1574 477 0 0 0 chr1 129666805 129666858 -67528574 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1574 465 90 0 0 chr1 129667188 129667255 -67528177 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1574 1239 54 0 0 chr1 129667537 129667685 -67527747 - B1_Mus1 SINE Alu 0 148 1 4 1574 436 262 129 41 chr1 129668354 129668525 -67526907 + B3 SINE B2 1 186 -30 4 1574 500 271 47 0 chr1 129668580 129668709 -67526723 + RSINE1 SINE B4 17 151 -14 4 1574 546 226 95 33 chr1 129668777 129668987 -67526445 - L1MC LINE L1 -1990 4156 3934 4 1574 580 270 25 25 chr1 129669281 129669444 -67525988 - RSINE1 SINE B4 0 165 3 4 1574 463 256 8 23 chr1 129669952 129670084 -67525348 + ID_B1 SINE B4 90 219 -5 4 1574 741 146 13 34 chr1 129671998 129672147 -67523285 - B1_Mur2 SINE Alu -2 147 2 4 1574 330 259 99 0 chr1 129673845 129673926 -67521506 + RSINE1 SINE B4 3 91 -74 4 1574 294 152 0 0 chr1 129673933 129673992 -67521440 + CT-rich Low_complexity Low_complexity 3 61 0 4 1574 1013 211 31 71 chr1 129674030 129674254 -67521178 - B3 SINE B2 0 216 2 4 1574 545 184 26 26 chr1 129674284 129674401 -67521031 + PB1D9 SINE Alu 2 118 -2 4 1574 1154 204 169 8 chr1 129674766 129675127 -67520305 + Lx9 LINE L1 7226 7644 0 4 1574 873 182 0 13 chr1 129675163 129675313 -67520119 - B1_Mur3 SINE Alu 0 149 2 4 1574 432 183 250 0 chr1 129675340 129675444 -67519988 - B3 SINE B2 -86 130 1 4 1574 235 250 206 0 chr1 129675712 129675804 -67519628 - PB1D10 SINE Alu 0 149 39 4 1574 1107 139 13 77 chr1 129676155 129676389 -67519043 - URR1B DNA MER1_type -6 219 1 4 1574 383 256 0 0 chr1 129676665 129676743 -67518689 - ID4_ SINE ID -2 81 4 4 1574 25 65 0 0 chr1 129677322 129677368 -67518064 + AT_rich Low_complexity Low_complexity 1 46 0 4 1574 348 173 254 0 chr1 129677443 129677553 -67517879 - B1_Mur2 SINE Alu -10 139 2 4 1574 231 304 50 42 chr1 129677610 129677730 -67517702 - MIRb SINE MIR -101 167 47 4 1574 252 275 0 28 chr1 129678284 129678355 -67517077 - MTEb LTR MaLR 0 379 311 4 1574 320 281 233 16 chr1 129678853 129679106 -67516326 - L1MB2 LINE L1 -249 5922 5615 4 1574 797 183 147 21 chr1 129679170 129679360 -67516072 - B3 SINE B2 0 216 3 4 1574 348 269 38 19 chr1 129679410 129679516 -67515916 - B1F SINE Alu 0 149 42 4 1574 289 249 99 8 chr1 129679627 129679789 -67515643 - L1M4 LINE L1 -844 5468 5290 4 1574 520 235 76 0 chr1 129679835 129679954 -67515478 - B1_Mur2 SINE Alu 0 149 22 4 1574 536 138 41 152 chr1 129679962 129680107 -67515325 + B1_Mur3 SINE Alu 6 134 -15 4 1574 22 0 0 0 chr1 129680148 129680170 -67515262 + AT_rich Low_complexity Low_complexity 1 22 0 4 1574 529 179 246 62 chr1 129681414 129681593 -67513839 - B3 SINE B2 -4 212 1 4 1574 230 271 42 28 chr1 129681666 129681738 -67513694 - tRNA-Ala-GCY_ tRNA tRNA -1 74 2 4 1574 231 277 62 0 chr1 129681676 129681741 -67513691 - ID4_ SINE ID -11 72 4 4 1574 260 294 35 0 chr1 129681782 129681867 -67513565 - MLT1A1 LTR MaLR -21 387 300 4 1574 719 220 116 16 chr1 129683187 129683376 -67512056 - B3 SINE B2 -7 209 2 4 1574 639 152 85 39 chr1 129684444 129684574 -67510858 + B1_Mur2 SINE Alu 1 136 -13 4 1574 222 37 0 0 chr1 129684574 129684601 -67510831 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1574 25 0 0 0 chr1 129685284 129685309 -67510123 + AT_rich Low_complexity Low_complexity 1 25 0 4 1574 1172 61 0 0 chr1 129685820 129685967 -67509465 - B1_Mus2 SINE Alu 0 147 1 4 1574 1030 43 51 0 chr1 129686134 129686272 -67509160 + B1_Mus2 SINE Alu 2 146 -1 4 1574 374 221 95 0 chr1 129686416 129686511 -67508921 + PB1D9 SINE Alu 9 112 -8 4 1574 207 162 0 0 chr1 129686845 129686882 -67508550 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1574 666 253 60 27 chr1 129686898 129687081 -67508351 - B3 SINE B2 0 216 28 4 1574 844 17 256 0 chr1 129687084 129687201 -67508231 + B1_Mus1 SINE Alu 2 148 0 4 1574 397 198 0 24 chr1 129687833 129687916 -67507516 + HY4 scRNA scRNA 1 81 -12 4 1574 248 282 12 37 chr1 129687953 129688034 -67507398 + ID4 SINE ID 5 83 0 4 1574 211 274 182 45 chr1 129689042 129689130 -67506302 - PB1D10 SINE Alu -17 100 1 4 1574 852 120 15 22 chr1 129689677 129689813 -67505619 - B1_Mur3 SINE Alu -9 140 6 4 1574 21 36 0 0 chr1 129690576 129690604 -67504828 + AT_rich Low_complexity Low_complexity 1 28 0 4 1574 588 179 35 9 chr1 129690604 129690717 -67504715 + PB1D9 SINE Alu 4 119 -1 4 1574 234 0 0 0 chr1 129692379 129692405 -67503027 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1574 372 119 0 0 chr1 129693009 129693068 -67502364 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1574 285 159 0 0 chr1 129694037 129694100 -67501332 + T-rich Low_complexity Low_complexity 1 63 0 4 1574 638 209 28 35 chr1 129695201 129695345 -67500087 + ID_B1 SINE B4 82 224 0 4 1574 29 60 0 0 chr1 129695713 129695763 -67499669 + AT_rich Low_complexity Low_complexity 1 50 0 4 1574 899 48 0 8 chr1 129696357 129696483 -67498949 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 1574 22 0 0 0 chr1 129697117 129697139 -67498293 + AT_rich Low_complexity Low_complexity 1 22 0 4 1574 702 279 164 35 chr1 129697264 129697915 -67497517 - L1MC4a LINE L1 -17 7865 7131 4 1574 186 71 0 0 chr1 129697978 129698006 -67497426 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1574 225 242 0 0 chr1 129701137 129701203 -67494229 + (TGAG)n Simple_repeat Simple_repeat 2 67 0 4 1574 270 81 0 0 chr1 129704824 129704861 -67490571 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1574 186 43 0 0 chr1 129705212 129705235 -67490197 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1574 1179 55 0 7 chr1 129705237 129705384 -67490048 - B1_Mm SINE Alu -1 146 1 4 1574 519 140 106 53 chr1 129705492 129705605 -67489827 + B1_Mm SINE Alu 7 125 -22 4 1574 4134 114 97 23 chr1 129706029 129706580 -67488852 - Lx2 LINE L1 -6 6991 6397 4 1574 225 0 0 0 chr1 129706580 129706605 -67488827 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1574 4134 114 97 23 chr1 129706605 129706788 -67488644 - Lx2 LINE L1 -601 6396 6203 4 1574 279 342 58 45 chr1 129707090 129707246 -67488186 + RSINE1 SINE B4 2 159 -6 4 1574 649 294 27 16 chr1 129707276 129707463 -67487969 + B4 SINE B4 98 286 -6 4 1574 676 265 60 4 chr1 129707839 129708074 -67487358 - B4A SINE B4 -10 282 35 4 1574 1277 34 0 0 chr1 129708359 129708505 -67486927 + B1_Mm SINE Alu 1 146 -1 4 1574 470 128 57 171 chr1 129708549 129708672 -67486760 - ID_B1 SINE B4 -13 211 103 4 1574 522 0 0 0 chr1 129708715 129708773 -67486659 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1574 288 0 0 0 chr1 129708773 129708804 -67486628 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1574 619 182 86 57 chr1 129709105 129709245 -67486187 + B1_Mur4 SINE Alu 1 144 -6 4 1574 315 0 0 0 chr1 129709257 129709292 -67486140 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 4 1574 645 190 371 13 chr1 129709687 129709992 -67485440 - MTC LTR MaLR -7 414 1 4 1574 763 152 27 55 chr1 129710048 129710194 -67485238 + B1_Mur4 SINE Alu 1 142 -8 4 1574 273 57 0 0 chr1 129710572 129710607 -67484825 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1574 258 267 13 39 chr1 129710708 129710786 -67484646 + B4 SINE B4 3 78 -214 5 1574 216 336 26 26 chr1 129710786 129710812 -67484620 + B3A SINE B2 3 106 -92 5 1574 613 239 99 19 chr1 129710812 129710974 -67484458 + B3A SINE B2 1 175 -23 5 1574 21 36 0 0 chr1 129710984 129711012 -67484420 + AT_rich Low_complexity Low_complexity 1 28 0 5 1574 1208 72 28 0 chr1 129711016 129711197 -67484235 + B2_Mm2 SINE B2 7 192 -3 5 1574 409 219 129 74 chr1 129711199 129711362 -67484070 + B4A SINE B4 121 292 0 5 1574 1008 142 7 0 chr1 129711413 129711561 -67483871 + B1_Mur2 SINE Alu 1 149 0 5 1574 627 266 60 5 chr1 129712010 129712195 -67483237 + B3A SINE B2 1 195 -3 5 1574 519 259 138 51 chr1 129712318 129712513 -67482919 + ID_B1 SINE B4 3 214 -10 5 1574 689 132 145 15 chr1 129712610 129712741 -67482691 - B1_Mus1 SINE Alu 0 148 1 5 1574 21 0 0 0 chr1 129712751 129712772 -67482660 + AT_rich Low_complexity Low_complexity 1 21 0 5 1574 636 271 21 0 chr1 129712827 129712967 -67482465 - B1F SINE Alu -1 148 6 5 1574 315 0 0 0 chr1 129713066 129713101 -67482331 + (TGG)n Simple_repeat Simple_repeat 2 36 0 5 1574 489 274 26 52 chr1 129713123 129713277 -67482155 + RSINE1 SINE B4 3 152 -13 5 1574 316 179 21 116 chr1 129713330 129713425 -67482007 + MT2B LTR ERVL 156 241 -360 5 1574 541 169 10 10 chr1 129713347 129713443 -67481989 + PB1D9 SINE Alu 9 104 -16 5 1574 387 0 0 0 chr1 129713443 129713486 -67481946 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 1574 727 191 191 0 chr1 129713543 129713726 -67481706 - ID_B1 SINE B4 -6 218 1 5 1574 609 83 0 0 chr1 129714808 129714892 -67480540 + (TC)n Simple_repeat Simple_repeat 2 85 0 5 1574 621 203 53 0 chr1 129714894 129715027 -67480405 + B1_Mur1 SINE Alu 1 140 -9 5 1574 570 265 30 69 chr1 129715034 129715237 -67480195 - B3A SINE B2 0 198 4 5 1574 620 242 15 0 chr1 129715237 129715369 -67480063 - ID_B1 SINE B4 -7 217 84 5 1574 837 257 69 62 chr1 129715379 129715669 -67479763 - B4A SINE B4 0 292 1 5 1574 288 0 0 0 chr1 129715939 129715971 -67479461 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1574 596 177 44 0 chr1 129715971 129716084 -67479348 - B1_Mur3 SINE Alu -9 140 23 5 1574 1614 236 11 8 chr1 129716266 129716634 -67478798 + MTE2b LTR MaLR 2 370 -9 5 1574 474 216 0 19 chr1 129717192 129717296 -67478136 - ID_B1 SINE B4 0 224 123 5 1574 325 150 84 36 chr1 129717322 129717405 -67478027 - RMER30 DNA MER1_type -18 184 98 5 1574 189 0 0 0 chr1 129717406 129717427 -67478005 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 1574 218 242 147 29 chr1 129717636 129717704 -67477728 + ID2 SINE ID 6 81 -2 5 1574 404 223 10 60 chr1 129717711 129717811 -67477621 + ID_B1 SINE B4 129 223 -1 5 1574 907 123 113 118 chr1 129717965 129718080 -67477352 + URR1A DNA MER1_type 1 126 -100 5 1574 620 181 158 0 chr1 129718080 129718207 -67477225 + B1_Mus1 SINE Alu 1 147 -1 5 1574 907 123 113 118 chr1 129718207 129718312 -67477120 + URR1A DNA MER1_type 127 220 -6 5 1574 402 270 96 62 chr1 129718316 129718462 -67476970 + RSINE1 SINE B4 15 165 0 5 1574 739 179 104 0 chr1 129721024 129721158 -67474274 - B1_Mus1 SINE Alu 0 148 1 5 1574 1468 147 205 3 chr1 129721271 129721593 -67473839 + ORR1B1 LTR MaLR 8 394 0 5 1574 298 190 17 0 chr1 129721593 129721651 -67473781 - ID4 SINE ID -16 67 9 5 1574 1284 86 29 0 chr1 129721724 129721899 -67473533 - B2_Mm2 SINE B2 -14 181 2 5 1574 300 240 26 13 chr1 129721930 129722006 -67473426 + ID4_ SINE ID 1 77 -6 5 1574 234 264 69 0 chr1 129722008 129722080 -67473352 + ID_B1 SINE B4 97 173 -51 5 1574 606 63 0 0 chr1 129722100 129722179 -67473253 + (CATA)n Simple_repeat Simple_repeat 2 80 0 5 1574 877 242 0 0 chr1 129722194 129722359 -67473073 + RSINE1 SINE B4 1 165 0 5 1574 543 117 39 0 chr1 129722362 129722490 -67472942 + (CAGA)n Simple_repeat Simple_repeat 2 134 0 5 1574 21 0 0 0 chr1 129722493 129722514 -67472918 + AT_rich Low_complexity Low_complexity 1 21 0 5 1574 348 271 9 36 chr1 129722523 129722634 -67472798 + BC1_Mm scRNA scRNA 11 118 -34 5 1574 548 331 22 0 chr1 129722686 129722864 -67472568 + B3A SINE B2 1 182 -16 5 1574 674 181 85 48 chr1 129722912 129723087 -67472345 + B3 SINE B2 24 216 0 5 1574 185 132 0 26 chr1 129723141 129723180 -67472252 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1574 615 196 25 123 chr1 129723181 129723344 -67472088 - B1_Mus2 SINE Alu 0 147 1 5 1574 583 274 41 35 chr1 129723566 129723763 -67471669 + ID_B1 SINE B4 16 213 -11 5 1574 236 30 30 0 chr1 129723763 129723796 -67471636 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1574 769 174 173 38 chr1 129723823 129724008 -67471424 - B3 SINE B2 -6 210 1 5 1574 1127 57 43 0 chr1 129724409 129724550 -67470882 + B1_Mus2 SINE Alu 1 147 0 5 1574 944 254 74 4 chr1 129724568 129724797 -67470635 + B4 SINE B4 2 246 -46 5 1574 533 165 0 0 chr1 129725085 129725176 -67470256 + PB1D9 SINE Alu 18 108 -12 5 1574 954 152 0 0 chr1 129725443 129725588 -67469844 - B1_Mur4 SINE Alu -1 149 5 5 1574 737 256 45 45 chr1 129725861 129726082 -67469350 - ID_B1 SINE B4 -3 221 1 5 1574 317 24 24 0 chr1 129726208 129726250 -67469182 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1574 510 308 81 0 chr1 129726300 129726485 -67468947 - B4 SINE B4 -12 280 81 5 1574 295 225 127 0 chr1 129726523 129726594 -67468838 - B4 SINE B4 -212 80 1 5 1574 1149 235 5 0 chr1 129727769 129727990 -67467442 - ID_B1 SINE B4 -2 222 1 5 1574 307 333 0 0 chr1 129728454 129728541 -67466891 - B1F2 SINE Alu -32 117 31 5 1574 210 105 0 0 chr1 129728808 129728846 -67466586 + (TCTCTG)n Simple_repeat Simple_repeat 6 43 0 5 1574 835 246 82 31 chr1 129728914 129729170 -67466262 - B4A SINE B4 -20 272 4 5 1574 422 269 157 14 chr1 129729541 129729618 -67465814 - RMER30 DNA MER1_type -24 178 80 5 1574 225 0 0 0 chr1 129729618 129729643 -67465789 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1574 324 0 0 0 chr1 129729643 129729678 -67465754 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1574 422 269 157 14 chr1 129729678 129729746 -67465686 - RMER30 DNA MER1_type -123 79 12 5 1574 393 355 57 0 chr1 129729779 129729920 -67465512 + RSINE1 SINE B4 17 165 0 5 1574 21 36 0 0 chr1 129730140 129730168 -67465264 + GC_rich Low_complexity Low_complexity 1 28 0 5 1574 454 99 84 0 chr1 129730590 129730721 -67464711 + CT-rich Low_complexity Low_complexity 1 142 0 5 1574 410 234 42 139 chr1 129730766 129731006 -67464426 - B4 SINE B4 -2 290 1 5 1574 430 288 39 13 chr1 129731236 129731391 -67464041 + B4 SINE B4 5 163 -129 5 1574 29 47 0 0 chr1 129732063 129732106 -67463326 + AT_rich Low_complexity Low_complexity 1 43 0 5 1574 546 118 412 0 chr1 129732106 129732208 -67463224 - B1_Mur4 SINE Alu -6 144 1 5 1574 438 20 0 0 chr1 129732238 129732289 -67463143 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1574 621 241 0 21 chr1 129732305 129732445 -67462987 - RSINE1 SINE B4 -17 148 12 5 1574 704 232 26 0 chr1 129732549 129732700 -67462732 + ID_B1 SINE B4 67 221 -3 5 1574 440 297 47 0 chr1 129732899 129733027 -67462405 + RSINE1 SINE B4 13 146 -19 5 1574 24 32 0 0 chr1 129733045 129733076 -67462356 + AT_rich Low_complexity Low_complexity 1 31 0 5 1574 23 54 0 0 chr1 129733131 129733168 -67462264 + AT_rich Low_complexity Low_complexity 1 37 0 5 1574 377 269 40 27 chr1 129733248 129733397 -67462035 + MLT1A0 LTR MaLR 12 162 -203 5 1574 378 0 0 0 chr1 129733573 129733615 -67461817 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1574 465 298 62 10 chr1 129733687 129733880 -67461552 + RMER15 LTR ERVL 372 574 -1 5 1574 974 153 0 7 chr1 129733943 129734094 -67461338 - B1_Mur4 SINE Alu 0 150 1 5 1574 537 88 0 0 chr1 129734161 129734241 -67461191 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1574 1128 171 62 0 chr1 129734279 129734472 -67460960 - B3 SINE B2 -11 205 1 5 1574 221 247 309 0 chr1 129734546 129734627 -67460805 + B1F1 SINE Alu 37 142 -7 5 1574 629 231 129 36 chr1 129734771 129734964 -67460468 - B3 SINE B2 -5 211 1 5 1574 261 57 0 0 chr1 129735221 129735256 -67460176 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1574 318 211 13 26 chr1 129735725 129735803 -67459629 + B4 SINE B4 11 87 -205 5 1574 815 251 44 10 chr1 129735833 129735863 -67459569 + B3 SINE B2 5 34 -182 5 1574 264 59 0 0 chr1 129735863 129735897 -67459535 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 5 1574 815 251 44 10 chr1 129735897 129736071 -67459361 + B3 SINE B2 35 215 -1 5 1574 407 264 129 23 chr1 129736090 129736222 -67459210 + B4 SINE B4 81 226 -66 5 1574 632 240 116 12 chr1 129736224 129736397 -67459035 + B3A SINE B2 1 191 -7 5 1574 180 184 0 0 chr1 129736458 129736507 -67458925 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1574 577 244 66 7 chr1 129736615 129736751 -67458681 + B1_Mur2 SINE Alu 5 148 -1 5 1574 319 304 0 0 chr1 129737140 129737219 -67458213 + ID SINE ID 2 80 -144 5 1574 353 245 266 19 chr1 129737246 129737400 -67458032 - ID_B1 SINE B4 -32 192 1 5 1574 22 0 0 0 chr1 129737497 129737519 -67457913 + AT_rich Low_complexity Low_complexity 1 22 0 5 1574 276 30 0 0 chr1 129738330 129738363 -67457069 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1574 759 197 63 0 chr1 129738365 129738507 -67456925 - ID_B1 SINE B4 -15 209 59 5 1574 306 0 0 0 chr1 129738508 129738542 -67456890 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1574 398 243 71 9 chr1 129738563 129738675 -67456757 - RSINE1 SINE B4 -44 121 3 6 1574 1009 296 4 22 chr1 129738942 129739212 -67456220 + B4A SINE B4 2 266 -26 6 1574 333 140 0 0 chr1 129739222 129739279 -67456153 + (GGA)n Simple_repeat Simple_repeat 3 59 0 6 1574 619 125 27 0 chr1 129739273 129739385 -67456047 + GA-rich Low_complexity Low_complexity 3 117 0 6 1574 196 252 29 14 chr1 129739527 129739597 -67455835 + MIRb SINE MIR 113 190 -78 6 1574 21 57 0 0 chr1 129739781 129739816 -67455616 + AT_rich Low_complexity Low_complexity 1 35 0 6 1574 551 291 32 60 chr1 129740248 129740464 -67454968 + B3A SINE B2 1 210 -6 6 1574 333 242 33 11 chr1 129740494 129740586 -67454846 + B4A SINE B4 1 94 -198 6 1574 233 98 24 24 chr1 129740704 129740746 -67454686 + RMER15 LTR ERVL 31 72 -503 6 1574 727 160 8 8 chr1 129740808 129740934 -67454498 + B1_Mus2 SINE Alu 21 146 -1 6 1574 208 178 0 22 chr1 129740938 129740984 -67454448 + A-rich Low_complexity Low_complexity 3 47 0 6 1574 959 239 112 0 chr1 129740988 129741248 -67454184 + RMER15 LTR ERVL 68 356 -219 6 1574 647 144 10 0 chr1 129741248 129741352 -67454080 + RLTR28 LTR ERVL 1 105 -419 6 1574 3808 0 0 0 chr1 129741355 129741768 -67453664 - L1Md_T LINE L1 0 6582 6170 6 1574 999 27 0 0 chr1 129741768 129741880 -67453552 + L1Md_T LINE L1 6064 6175 -407 6 1574 1634 155 55 6 chr1 129741880 129742205 -67453227 + RLTR28 LTR ERVL 92 432 -92 6 1574 387 214 71 0 chr1 129742198 129742296 -67453136 + RMER15 LTR ERVL 471 575 0 6 1574 526 298 66 17 chr1 129742299 129742480 -67452952 + B4 SINE B4 95 284 -8 6 1574 423 0 0 0 chr1 129742497 129742544 -67452888 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1574 1670 47 0 0 chr1 129742559 129742752 -67452680 - B2_Mm1t SINE B2 0 193 1 6 1574 259 23 45 23 chr1 129743026 129743070 -67452362 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 6 1574 1108 75 7 0 chr1 129743070 129743216 -67452216 - B1_Mus2 SINE Alu 0 147 1 6 1574 496 308 14 76 chr1 129743332 129743495 -67451937 + B3A SINE B2 1 159 -39 6 1574 408 55 0 0 chr1 129743495 129743550 -67451882 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1574 496 308 14 76 chr1 129743550 129743597 -67451835 + B3A SINE B2 160 198 0 6 1574 204 238 0 0 chr1 129743659 129743785 -67451647 + (CCCTG)n Simple_repeat Simple_repeat 3 128 0 6 1574 437 115 69 50 chr1 129744095 129744196 -67451236 - B1_Mus1 SINE Alu -40 108 6 6 1574 561 105 0 0 chr1 129744113 129744199 -67451233 - 4.5SRNA scRNA scRNA -8 86 1 6 1574 253 47 44 59 chr1 129744233 129744288 -67451144 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1574 893 145 20 7 chr1 129744288 129744434 -67450998 - B1_Mur4 SINE Alu 0 150 3 6 1574 253 47 44 59 chr1 129744434 129744446 -67450986 + (TTTTTG)n Simple_repeat Simple_repeat 2 13 0 6 1574 724 250 0 0 chr1 129744447 129744595 -67450837 - B1_Mur1 SINE Alu -1 148 1 6 1574 180 0 0 0 chr1 129744634 129744654 -67450778 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 6 1574 367 217 157 50 chr1 129744665 129744786 -67450646 - B3A SINE B2 -64 134 1 6 1574 1219 84 73 0 chr1 129744886 129745064 -67450368 + B2_Mm2 SINE B2 2 192 -3 6 1574 235 171 133 67 chr1 129745098 129745173 -67450259 + ID4_ SINE ID 3 82 -1 6 1574 682 157 50 0 chr1 129745238 129745359 -67450073 + B1_Mur1 SINE Alu 6 132 -17 6 1574 185 79 0 73 chr1 129745379 129745420 -67450012 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1574 730 246 126 0 chr1 129745522 129745721 -67449711 - ID_B1 SINE B4 0 224 1 6 1574 367 210 62 14 chr1 129745784 129745929 -67449503 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 6 1574 767 253 11 5 chr1 129746373 129746564 -67448868 + ID_B1 SINE B4 2 193 -31 6 1574 231 36 0 0 chr1 129746673 129746701 -67448731 + (CAA)n Simple_repeat Simple_repeat 2 29 0 6 1574 583 280 169 20 chr1 129747206 129747454 -67447978 + B4A SINE B4 8 292 0 6 1574 348 310 0 11 chr1 129747514 129747602 -67447830 + B4A SINE B4 1 87 -205 6 1574 535 271 0 0 chr1 129747604 129747711 -67447721 + RSINE1 SINE B4 57 163 -2 6 1574 3147 138 159 17 chr1 129747743 129748346 -67447086 + RMER6C LTR ERVK 1 689 -1 6 1574 635 179 100 67 chr1 129748398 129748578 -67446854 + B2_Mm2 SINE B2 1 186 -9 6 1574 758 177 211 0 chr1 129748578 129748753 -67446679 - B3 SINE B2 -4 212 1 6 1574 24 32 0 0 chr1 129748753 129748784 -67446648 + AT_rich Low_complexity Low_complexity 1 31 0 6 1574 550 128 196 0 chr1 129748784 129748886 -67446546 + B1_Mus1 SINE Alu 15 136 -12 6 1574 252 0 0 0 chr1 129748887 129748915 -67446517 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1574 273 245 189 0 chr1 129749711 129749817 -67445615 - B1F SINE Alu -1 148 23 6 1574 1096 89 14 0 chr1 129749839 129749985 -67445447 - B1_Mus1 SINE Alu 0 148 1 6 1574 26 0 0 0 chr1 129750035 129750061 -67445371 + AT_rich Low_complexity Low_complexity 1 26 0 6 1574 225 0 0 0 chr1 129750342 129750367 -67445065 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 1574 997 88 225 6 chr1 129750605 129750765 -67444667 - B2_Mm2 SINE B2 0 195 1 6 1574 315 202 21 11 chr1 129752452 129752547 -67442885 + CT-rich Low_complexity Low_complexity 2 97 0 6 1574 659 139 8 17 chr1 129752548 129752665 -67442767 - B1_Mur2 SINE Alu 0 149 34 6 1574 575 247 139 18 chr1 129752971 129753136 -67442296 + B3A SINE B2 2 186 -9 6 1574 1289 68 79 0 chr1 129753375 129753552 -67441880 + B2_Mm2 SINE B2 3 193 -2 6 1574 670 284 10 10 chr1 129753704 129753896 -67441536 - ID_B1 SINE B4 -30 194 3 6 1574 231 350 10 10 chr1 129753903 129754004 -67441428 + L1MEf LINE L1 1499 1599 -4601 6 1574 357 158 105 0 chr1 129754007 129754083 -67441349 + B1_Mur4 SINE Alu 7 90 -60 6 1574 429 19 0 0 chr1 129754200 129754208 -67441224 + (TC)n Simple_repeat Simple_repeat 1 8 0 6 1574 887 109 19 6 chr1 129754208 129754365 -67441067 + (TTC)n Simple_repeat Simple_repeat 3 161 0 6 1574 429 19 0 0 chr1 129754365 129754408 -67441024 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1574 396 0 0 0 chr1 129754505 129754549 -67440883 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1574 355 274 31 86 chr1 129754557 129754685 -67440747 - RSINE1 SINE B4 -41 124 4 6 1574 259 133 183 0 chr1 129754687 129754747 -67440685 + LTR80A LTR ERVL 505 575 -8 6 1574 1895 175 86 13 chr1 129754886 129755269 -67440163 + MTD LTR MaLR 1 411 -8 6 1574 251 237 25 17 chr1 129755374 129755494 -67439938 + CT-rich Low_complexity Low_complexity 2 122 0 6 1574 220 250 103 0 chr1 129755509 129755522 -67439910 - ID SINE ID -137 87 13 6 1574 231 200 18 0 chr1 129755522 129755577 -67439855 - ID4 SINE ID -15 68 13 6 1574 1060 97 0 7 chr1 129756135 129756280 -67439152 - B1_Mus1 SINE Alu -1 147 4 6 1574 348 24 0 0 chr1 129756329 129756370 -67439062 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1574 1079 254 65 18 chr1 129756403 129756680 -67438752 - B4 SINE B4 0 292 3 6 1574 1313 91 23 6 chr1 129756711 129756888 -67438544 + B2_Mm2 SINE B2 3 182 -13 6 1574 186 43 0 0 chr1 129756888 129756911 -67438521 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1574 630 126 271 7 chr1 129756955 129757099 -67438333 - B2_Mm2 SINE B2 -13 182 1 6 1574 602 287 53 19 chr1 129757231 129757437 -67437995 + ID_B1 SINE B4 5 217 -7 6 1574 833 160 34 20 chr1 129757449 129757596 -67437836 + B1_Mur3 SINE Alu 1 149 0 6 1574 434 263 48 66 chr1 129757775 129757942 -67437490 + RSINE1 SINE B4 2 165 0 6 1574 632 229 21 28 chr1 129757953 129758097 -67437335 - B1_Mur1 SINE Alu 0 149 7 6 1574 328 212 0 0 chr1 129758170 129758236 -67437196 + B4 SINE B4 82 147 -145 6 1574 1614 218 133 45 chr1 129758244 129758686 -67436746 - Lx8 LINE L1 -772 6701 6221 6 1574 392 229 17 68 chr1 129758688 129758782 -67436650 + B4 SINE B4 165 252 -40 6 1574 2280 132 86 115 chr1 129758782 129759139 -67436293 + RLTR19 LTR ERVK 1 338 -161 6 1574 4698 55 42 3 chr1 129759139 129759742 -67435690 - L1Md_F2 LINE L1 -12 6570 5945 6 1574 2280 132 86 115 chr1 129759742 129759897 -67435535 + RLTR19 LTR ERVK 339 498 -1 6 1574 1132 102 0 0 chr1 129761114 129761261 -67434171 - B1_Mus2 SINE Alu 0 147 1 6 1575 2762 85 2 17 chr1 129761356 129761433 -67433999 - MTB LTR MaLR 0 400 330 6 1575 3289 34 29 0 chr1 129761433 129761818 -67433614 - MTA_Mm LTR MaLR 0 396 1 6 1575 2762 85 2 17 chr1 129761818 129762146 -67433286 - MTB LTR MaLR -71 329 1 6 1575 2981 148 67 105 chr1 129762146 129762291 -67433141 - MTB-int LTR MaLR 0 1258 1153 6 1575 1323 101 6 0 chr1 129762291 129762469 -67432963 - B2_Mm1t SINE B2 -14 179 1 6 1575 2981 148 67 105 chr1 129762469 129763085 -67432347 - MTB-int LTR MaLR -106 1152 526 6 1575 363 93 0 18 chr1 129763074 129763129 -67432303 - MTB-int LTR MaLR -1044 54 1 6 1575 998 90 0 7 chr1 129763129 129763275 -67432157 - MTB LTR MaLR 0 400 256 6 1575 540 29 0 0 chr1 129763258 129763327 -67432105 + MTB LTR MaLR 209 277 -123 6 1575 816 206 0 7 chr1 129763327 129763469 -67431963 + B1_Mur2 SINE Alu 3 143 -6 6 1575 918 277 0 0 chr1 129763484 129763690 -67431742 - B3 SINE B2 -10 206 1 6 1575 869 136 13 39 chr1 129763822 129763975 -67431457 - B1_Mur3 SINE Alu 0 149 1 6 1575 533 279 81 29 chr1 129764088 129764298 -67431134 + ID_B1 SINE B4 2 222 -2 6 1575 963 106 44 113 chr1 129764302 129764505 -67430927 + B2_Mm2 SINE B2 2 190 -5 6 1575 205 75 75 0 chr1 129764668 129764708 -67430724 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 6 1575 1200 61 0 0 chr1 129764714 129764861 -67430571 - B1_Mus2 SINE Alu 0 147 1 6 1575 1060 233 0 18 chr1 129764929 129765148 -67430284 - B3 SINE B2 -1 215 1 6 1575 334 316 53 0 chr1 129766536 129766650 -67428782 + PB1 SINE Alu 1 120 -7 6 1575 358 292 80 27 chr1 129766817 129766968 -67428464 - MER5A DNA MER1_type -7 159 1 6 1575 726 218 207 0 chr1 129767356 129767530 -67427902 + B3 SINE B2 1 210 -6 6 1575 1586 53 0 0 chr1 129767555 129767745 -67427687 + B2_Mm1t SINE B2 2 191 -2 6 1575 423 292 153 40 chr1 129768213 129768559 -67426873 - RMER10A LTR ERVL -24 418 34 6 1575 198 71 0 0 chr1 129768913 129768941 -67426491 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1575 675 150 108 16 chr1 129768946 129769075 -67426357 - B1_Mus2 SINE Alu 0 147 7 7 1575 195 344 31 0 chr1 129769101 129769165 -67426267 - L2b LINE L2 -92 3283 3218 7 1575 859 186 6 11 chr1 129769397 129769571 -67425861 + B2_Mm2 SINE B2 1 173 -22 7 1575 23 33 0 0 chr1 129769590 129769620 -67425812 + AT_rich Low_complexity Low_complexity 1 30 0 7 1575 456 207 103 7 chr1 129770159 129770295 -67425137 - B3 SINE B2 -1 215 67 7 1575 690 213 0 7 chr1 129770951 129771093 -67424339 - B1_Mur2 SINE Alu -8 141 1 7 1575 270 0 0 0 chr1 129771460 129771490 -67423942 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1575 519 171 0 0 chr1 129771572 129771654 -67423778 - B1_Mur4 SINE Alu -63 87 6 7 1575 2996 24 0 0 chr1 129771657 129771994 -67423438 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1575 56629 22 15 7 chr1 129771994 129778414 -67417018 - IAPEz-int LTR ERVK 0 6481 8 7 1575 2965 24 0 0 chr1 129778414 129778751 -67416681 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1575 239 268 18 0 chr1 129779390 129779446 -67415986 + Charlie1b DNA MER1_type 467 523 0 7 1575 387 91 14 57 chr1 129779579 129779649 -67415783 + B1_Mur4 SINE Alu 84 150 0 7 1575 1181 49 7 0 chr1 129779665 129779808 -67415624 + B1_Mus2 SINE Alu 4 147 0 7 1575 601 221 23 69 chr1 129779857 129779988 -67415444 + B3A SINE B2 38 162 -36 7 1575 2417 113 98 26 chr1 129780727 129781155 -67414277 + L1_Mus4 LINE L1 6178 6636 0 7 1575 1200 62 0 0 chr1 129781465 129781611 -67413821 + B1_Mus1 SINE Alu 2 147 -1 7 1575 237 175 160 30 chr1 129782309 129782396 -67413036 - Lx9 LINE L1 0 7644 7542 7 1575 255 31 0 0 chr1 129782396 129782428 -67413004 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 7 1575 237 175 160 30 chr1 129782428 129782440 -67412992 - Lx9 LINE L1 -103 7541 7532 7 1575 1479 53 5 5 chr1 129782465 129782654 -67412778 - B2_Mm2 SINE B2 -5 190 2 7 1575 527 235 6 0 chr1 129782688 129782854 -67412578 + (TA)n Simple_repeat Simple_repeat 1 167 0 7 1575 5161 184 54 16 chr1 129782856 129784001 -67411431 - Lx9 LINE L1 -134 7510 6322 7 1575 1072 39 0 0 chr1 129784055 129784182 -67411250 + B1_Mus2 SINE Alu 2 128 -19 7 1575 28 71 0 0 chr1 129784196 129784252 -67411180 + AT_rich Low_complexity Low_complexity 1 56 0 7 1575 182 91 0 29 chr1 129784761 129784795 -67410637 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 7 1575 761 249 41 15 chr1 129784941 129785137 -67410295 - B3 SINE B2 -7 209 9 7 1575 204 111 0 0 chr1 129785378 129785414 -67410018 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1575 503 226 27 36 chr1 129785423 129785533 -67409899 - RSINE1 SINE B4 -11 154 46 7 1575 583 246 104 20 chr1 129786212 129786439 -67408993 - Tigger7 DNA MER2_type 0 2491 2248 7 1575 31 26 0 0 chr1 129787185 129787223 -67408209 + AT_rich Low_complexity Low_complexity 1 38 0 7 1575 24 77 0 0 chr1 129787243 129787295 -67408137 + AT_rich Low_complexity Low_complexity 1 52 0 7 1575 435 19 0 0 chr1 129787698 129787750 -67407682 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1575 306 0 0 0 chr1 129787750 129787783 -67407649 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1575 630 186 22 37 chr1 129787800 129787934 -67407498 - B1_Mur4 SINE Alu -2 148 17 7 1575 278 229 13 91 chr1 129787876 129787953 -67407479 - MT2B LTR ERVL -371 230 160 7 1575 1072 323 45 43 chr1 129788030 129788470 -67406962 - MER68 LTR ERVL -122 441 1 7 1575 2778 22 5 85 chr1 129788561 129788960 -67406472 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1575 27251 21 7 1 chr1 129788960 129792213 -67403219 - IAPEz-int LTR ERVK 0 6481 3210 7 1575 7174 102 84 13 chr1 129792212 129793432 -67402000 - IAPEz-int LTR ERVK -5168 1313 8 7 1575 2764 25 5 85 chr1 129793432 129793831 -67401601 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1575 26 0 0 0 chr1 129793843 129793869 -67401563 + AT_rich Low_complexity Low_complexity 1 26 0 7 1575 563 271 39 8 chr1 129794040 129794170 -67401262 + ID_B1 SINE B4 5 138 -86 7 1575 272 246 265 7 chr1 129794631 129794918 -67400514 - L1MB3 LINE L1 -215 5968 5596 7 1575 1686 16 0 0 chr1 129794933 129795122 -67400310 + B2_Mm1a SINE B2 2 190 -3 7 1575 519 208 18 53 chr1 129795130 129795281 -67400151 - B1F2 SINE Alu -2 147 16 7 1575 415 254 45 0 chr1 129795529 129795639 -67399793 + PB1D9 SINE Alu 1 115 -5 7 1575 533 55 14 0 chr1 129795937 129796010 -67399422 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1575 270 0 0 0 chr1 129796526 129796556 -67398876 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1575 27 29 0 0 chr1 129796755 129796789 -67398643 + AT_rich Low_complexity Low_complexity 1 34 0 7 1575 973 187 46 5 chr1 129796879 129797073 -67398359 + B3 SINE B2 1 202 -14 7 1575 310 227 30 18 chr1 129797689 129797785 -67397647 + ID2 SINE ID 1 94 -58 7 1575 490 277 60 30 chr1 129797781 129797915 -67397517 + RSINE1 SINE B4 11 148 -17 7 1575 453 36 0 0 chr1 129797920 129797975 -67397457 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1575 581 244 0 0 chr1 129798426 129798541 -67396891 + PB1D10 SINE Alu 1 115 -2 7 1575 1173 74 66 44 chr1 129798714 129798897 -67396535 - B2_Mm2 SINE B2 -8 187 1 7 1575 185 0 0 39 chr1 129798955 129798981 -67396451 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 1575 510 228 62 23 chr1 129798981 129799111 -67396321 - B1_Mur1 SINE Alu -13 136 2 7 1575 992 248 57 75 chr1 129799416 129799747 -67395685 + MER82 DNA MER2_type 2 326 -327 7 1575 466 315 114 33 chr1 129799775 129799985 -67395447 + MER82 DNA MER2_type 426 652 -1 7 1575 27 73 0 0 chr1 129800541 129800596 -67394836 + AT_rich Low_complexity Low_complexity 1 55 0 7 1575 825 207 91 20 chr1 129800596 129800793 -67394639 + B3 SINE B2 2 212 -4 7 1575 246 320 0 26 chr1 129801444 129801521 -67393911 + ID4_ SINE ID 1 75 -8 7 1575 1573 181 46 54 chr1 129801521 129801894 -67393538 + ORR1D1 LTR MaLR 3 372 -2 7 1575 962 155 7 0 chr1 129802311 129802459 -67392973 - B1_Mur3 SINE Alu 0 149 1 7 1575 239 316 136 32 chr1 129802937 129803091 -67392341 - L3 LINE CR1 -243 4246 4077 7 1575 1098 174 14 24 chr1 129803168 129803380 -67392052 + B3 SINE B2 1 210 -6 7 1575 243 0 0 0 chr1 129803401 129803428 -67392004 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1575 1339 13 0 0 chr1 129803428 129803585 -67391847 - B2_Mm1t SINE B2 -33 160 4 7 1575 246 376 32 42 chr1 129803891 129803946 -67391486 - B3A SINE B2 0 198 12 7 1575 666 241 30 8 chr1 129803946 129804080 -67391352 - RSINE1 SINE B4 -16 149 13 7 1575 808 227 56 17 chr1 129804855 129804930 -67390502 + B3 SINE B2 1 79 -137 7 1575 225 0 0 0 chr1 129804930 129804955 -67390477 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1575 808 227 56 17 chr1 129804955 129805058 -67390374 + B3 SINE B2 80 186 -30 7 1575 423 0 0 0 chr1 129805058 129805105 -67390327 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1575 1171 48 0 26 chr1 129805195 129805346 -67390086 + B1_Mm SINE Alu 1 147 0 7 1575 226 305 174 47 chr1 129805354 129805446 -67389986 + MLT2B5 LTR ERVL 191 326 -275 7 1575 229 209 0 0 chr1 129805446 129805489 -67389943 - B1F SINE Alu -8 141 99 7 1575 226 305 174 47 chr1 129805489 129805526 -67389906 + MLT2B5 LTR ERVL 327 384 -217 7 1575 291 261 45 11 chr1 129805974 129806063 -67389369 - Lx9 LINE L1 -492 7152 7061 7 1575 699 207 27 7 chr1 129806085 129806231 -67389201 - B1_Mur1 SINE Alu 0 149 1 7 1575 1159 180 33 5 chr1 129806882 129807094 -67388338 + URR1B DNA MER1_type 1 218 -7 7 1575 636 273 27 34 chr1 129807340 129807488 -67387944 - RSINE1 SINE B4 -17 148 2 7 1575 664 221 73 0 chr1 129807550 129807686 -67387746 - B1_Mus2 SINE Alu 0 147 2 7 1575 225 132 0 0 chr1 129807929 129807967 -67387465 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1575 588 228 121 9 chr1 129807987 129808208 -67387224 - L1MA4 LINE L1 -374 5926 5628 7 1575 22 0 0 0 chr1 129808249 129808271 -67387161 + AT_rich Low_complexity Low_complexity 1 22 0 7 1575 183 250 0 0 chr1 129808272 129808324 -67387108 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1575 261 0 0 0 chr1 129808382 129808411 -67387021 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 7 1575 848 288 29 50 chr1 129808953 129809194 -67386238 - B4A SINE B4 -46 246 11 7 1575 445 338 29 0 chr1 129809325 129809461 -67385971 - B1F SINE Alu -5 144 5 7 1575 321 254 0 0 chr1 129809856 129809915 -67385517 + tRNA-Ala-GCA tRNA tRNA 2 60 -15 7 1575 942 126 126 0 chr1 129810191 129810350 -67385082 - B2_Mm1t SINE B2 -14 179 1 7 1575 650 186 125 51 chr1 129810357 129810533 -67384899 - B2_Mm2 SINE B2 -6 189 1 7 1575 212 167 0 0 chr1 129810685 129810727 -67384705 + T-rich Low_complexity Low_complexity 1 42 0 7 1575 946 39 138 0 chr1 129810727 129810857 -67384575 - B1_Mus1 SINE Alu 0 148 1 7 1575 1243 58 87 0 chr1 129810888 129811060 -67384372 + B2_Mm2 SINE B2 1 187 -8 7 1575 1353 56 44 0 chr1 129811628 129811808 -67383624 + B2_Mm2 SINE B2 1 188 -7 7 1575 237 225 26 90 chr1 129812484 129812562 -67382870 + ID4_ SINE ID 1 73 -10 7 1575 259 309 107 0 chr1 129812564 129812648 -67382784 + Cheshire DNA MER1_type 2 94 -2326 7 1575 270 322 51 0 chr1 129812788 129812906 -67382526 - L1MB7 LINE L1 -29 6155 6032 7 1575 685 245 24 5 chr1 129812950 129813159 -67382273 - L1_Rod LINE L1 -6496 676 464 7 1575 322 260 113 8 chr1 129813624 129813748 -67381684 - L1MB7 LINE L1 -393 5791 5655 7 1575 296 150 0 11 chr1 129813837 129813892 -67381540 - ORR1B2 LTR MaLR -8 386 330 7 1575 1875 116 82 3 chr1 129814214 129814517 -67380915 - ORR1B2 LTR MaLR -40 327 1 7 1575 264 354 31 0 chr1 129814584 129814680 -67380752 - Lx8 LINE L1 -172 7301 7203 7 1575 281 241 0 0 chr1 129814699 129814757 -67380675 - L1MB7 LINE L1 -458 5666 5609 7 1575 283 265 73 0 chr1 129815120 129815188 -67380244 + ID4 SINE ID 2 74 -9 7 1575 645 167 0 0 chr1 129815234 129815336 -67380096 + B3 SINE B2 1 102 -114 7 1575 371 285 121 28 chr1 129815591 129815732 -67379700 - RSINE1 SINE B4 -8 157 4 7 1575 2191 153 3 31 chr1 129816498 129816882 -67378550 - MTB_Mm LTR MaLR -3 404 32 7 1575 1632 225 217 7 chr1 129816947 129817689 -67377743 - RCHARR1 DNA MER1_type 0 974 77 7 1575 1374 60 16 11 chr1 129817746 129817931 -67377501 + B2_Mm2 SINE B2 1 186 -9 7 1575 691 214 0 67 chr1 129818162 129818297 -67377135 - B1_Mur4 SINE Alu -9 141 16 8 1575 293 271 34 144 chr1 129818180 129818345 -67377087 - MT2B LTR ERVL -306 278 116 8 1575 987 111 109 23 chr1 129818513 129818688 -67376744 - B2_Mm2 SINE B2 -4 191 2 8 1575 261 0 0 0 chr1 129818697 129818726 -67376706 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1575 1071 134 52 51 chr1 129818742 129819047 -67376385 - RMER12 LTR ERVK -555 767 424 8 1575 302 100 82 16 chr1 129819041 129819102 -67376330 - B2_Mm1a SINE B2 -6 187 123 8 1575 27 0 0 0 chr1 129819119 129819146 -67376286 + AT_rich Low_complexity Low_complexity 1 27 0 8 1575 273 75 0 0 chr1 129819630 129819670 -67375762 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1575 1156 62 0 7 chr1 129819671 129819817 -67375615 - B1_Mus2 SINE Alu -1 146 2 8 1575 544 321 25 6 chr1 129819991 129820148 -67375284 - ID_B1 SINE B4 -12 212 53 8 1575 308 254 75 0 chr1 129820222 129820289 -67375143 + PB1D10 SINE Alu 22 93 -27 8 1575 256 201 123 56 chr1 129820948 129820965 -67374467 - B1_Mus1 SINE Alu 0 120 86 8 1575 281 148 18 18 chr1 129820965 129821020 -67374412 - 4.5SRNA scRNA scRNA 0 94 40 8 1575 256 201 123 56 chr1 129821020 129821058 -67374374 - B1_Mus1 SINE Alu 0 85 1 8 1575 560 157 0 34 chr1 129821095 129821210 -67374222 - B1_Mm SINE Alu -5 143 36 8 1575 381 43 0 0 chr1 129822182 129822229 -67373203 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1575 223 211 0 0 chr1 129822313 129822351 -67373081 - ID4 SINE ID -6 77 40 8 1575 657 184 78 31 chr1 129822713 129822842 -67372590 + B1_Mur2 SINE Alu 12 146 -3 8 1575 386 309 0 0 chr1 129823343 129823424 -67372008 + PB1D10 SINE Alu 24 104 -13 8 1575 281 331 19 68 chr1 129823824 129823838 -67371594 + ID_B1 SINE B4 70 219 -1 8 1575 469 274 62 62 chr1 129823838 129823982 -67371450 + B1_Mur1 SINE Alu 1 144 -5 8 1575 326 260 13 25 chr1 129824907 129824920 -67370512 - ID SINE ID -135 89 12 8 1575 366 227 0 0 chr1 129824920 129824986 -67370446 - ID4 SINE ID -6 77 12 8 1575 225 284 0 129 chr1 129824993 129825025 -67370407 + B4 SINE B4 64 144 -148 8 1575 275 207 0 49 chr1 129825025 129825086 -67370346 + PB1D9 SINE Alu 2 59 -61 8 1575 714 184 0 0 chr1 129825125 129825304 -67370128 + GA-rich Low_complexity Low_complexity 2 180 0 8 1575 567 171 23 43 chr1 129825269 129825528 -67369904 + (CAGAGA)n Simple_repeat Simple_repeat 1 253 0 8 1575 467 133 98 39 chr1 129825528 129825630 -67369802 + B1_Mur1 SINE Alu 42 149 0 8 1575 346 263 124 0 chr1 129825698 129825835 -67369597 + L1ME4a LINE L1 5954 6107 -17 8 1575 1297 62 50 22 chr1 129825896 129826078 -67369354 - B2_Mm2 SINE B2 -8 187 1 8 1575 1598 26 0 49 chr1 129826689 129826892 -67368540 + B2_Mm1a SINE B2 1 193 0 8 1575 240 35 0 0 chr1 129827065 129827094 -67368338 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 1575 649 279 104 85 chr1 129827850 129827987 -67367445 - Lx8 LINE L1 -5 7468 7343 8 1575 1245 34 0 7 chr1 129827987 129828136 -67367296 - B1_Mus1 SINE Alu 0 148 1 8 1575 649 279 104 85 chr1 129828136 129828410 -67367022 - Lx8 LINE L1 -131 7342 7049 8 1575 1097 88 0 0 chr1 129828696 129828843 -67366589 + B1_Mus2 SINE Alu 1 147 0 8 1575 469 0 33 0 chr1 129829486 129829547 -67365885 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 8 1575 584 246 14 61 chr1 129829547 129829694 -67365738 - B1_Mur1 SINE Alu -9 140 1 8 1575 1438 219 103 21 chr1 129830053 129830440 -67364992 + MTD LTR MaLR 1 419 0 8 1575 499 260 76 9 chr1 129830489 129830622 -67364810 - ID_B1 SINE B4 -19 205 71 8 1575 505 200 9 2 chr1 129831748 129831873 -67363559 - B3 SINE B2 -9 207 1 8 1575 691 139 119 0 chr1 129832213 129832356 -67363076 - B2_Mm2 SINE B2 -17 199 35 8 1575 595 104 0 0 chr1 129833063 129833140 -67362292 + B3 SINE B2 1 77 -139 8 1575 257 360 67 0 chr1 129833140 129833152 -67362280 + RSINE1 SINE B4 2 96 -69 8 1575 21 0 0 0 chr1 129834752 129834773 -67360659 + AT_rich Low_complexity Low_complexity 1 21 0 8 1575 295 294 15 0 chr1 129835036 129835104 -67360328 - RSINE1 SINE B4 -95 70 2 8 1575 325 282 195 10 chr1 129835311 129835443 -67359989 + B1F1 SINE Alu 4 149 0 8 1575 306 73 0 0 chr1 129836155 129836196 -67359236 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 1575 201 147 0 0 chr1 129836197 129836231 -67359201 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1575 1209 143 430 3 chr1 129836404 129836699 -67358733 - MTC LTR MaLR 0 421 1 8 1575 470 297 41 0 chr1 129837558 129837703 -67357729 + RSINE1 SINE B4 3 153 -12 8 1575 225 83 0 0 chr1 129839722 129839758 -67355674 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 8 1575 595 217 118 0 chr1 129840993 129841154 -67354278 + B3 SINE B2 30 209 -7 8 1575 484 158 128 10 chr1 129842536 129842638 -67352794 + B1_Mus2 SINE Alu 34 147 0 8 1575 701 139 133 44 chr1 129842978 129843113 -67352319 + B1_Mus2 SINE Alu 1 147 0 8 1575 21 0 0 0 chr1 129843132 129843153 -67352279 + AT_rich Low_complexity Low_complexity 1 21 0 8 1575 295 235 118 0 chr1 129843212 129843324 -67352108 - ID4_ SINE ID -22 130 5 8 1575 334 216 0 46 chr1 129843324 129843421 -67352011 + L1_Mur3 LINE L1 5169 5287 -856 8 1575 238 310 70 0 chr1 129843759 129843830 -67351602 + MER5A DNA MER1_type 4 79 -110 8 1575 275 178 167 64 chr1 129843904 129843982 -67351450 + B4A SINE B4 143 228 -64 8 1575 508 200 45 9 chr1 129843999 129844103 -67351329 - B1_Mur2 SINE Alu 0 149 42 8 1575 638 194 37 37 chr1 129844103 129844237 -67351195 + B1_Mm SINE Alu 3 136 -11 8 1575 386 282 75 86 chr1 129844127 129844313 -67351119 + B4A SINE B4 108 291 -1 8 1575 673 254 124 5 chr1 129844618 129844762 -67350670 + B3 SINE B2 2 166 -50 8 1575 180 77 0 0 chr1 129844762 129844788 -67350644 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1575 673 254 124 5 chr1 129844788 129844829 -67350603 + B3 SINE B2 167 209 -7 8 1575 307 237 39 13 chr1 129845058 129845135 -67350297 + B1F SINE Alu 13 91 -58 8 1575 231 267 17 0 chr1 129845752 129845812 -67349620 + tRNA-Ala-GCY_ tRNA tRNA 8 68 -7 8 1575 544 224 58 71 chr1 129845850 129846004 -67349428 - RMER30 DNA MER1_type -44 158 7 8 1575 216 130 0 0 chr1 129846252 129846298 -67349134 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1575 599 170 26 0 chr1 129847015 129847168 -67348264 + (TG)n Simple_repeat Simple_repeat 1 157 0 8 1575 353 347 70 70 chr1 129847233 129847518 -67347914 - B4A SINE B4 -7 285 1 8 1575 1814 154 67 42 chr1 129848246 129848604 -67346828 + ORR1B2 LTR MaLR 1 367 0 8 1575 573 229 0 17 chr1 129848762 129848882 -67346550 - PB1D9 SINE Alu -1 119 2 8 1575 564 230 50 0 chr1 129848922 129849061 -67346371 - B1F SINE Alu -3 146 1 8 1575 222 219 0 0 chr1 129849061 129849102 -67346330 - ID4_ SINE ID -4 79 39 8 1575 1541 62 48 5 chr1 129849095 129849305 -67346127 - RLTR14 LTR ERV1 -163 219 1 8 1575 531 237 209 0 chr1 129849893 129850070 -67345362 - B3 SINE B2 -1 215 2 8 1575 721 264 47 0 chr1 129850210 129850403 -67345029 - B4A SINE B4 -90 202 1 8 1575 843 178 0 0 chr1 129850415 129850550 -67344882 - B1_Mur1 SINE Alu -7 142 8 8 1575 28 0 0 0 chr1 129850748 129850776 -67344656 + AT_rich Low_complexity Low_complexity 1 28 0 8 1575 4289 90 14 0 chr1 129851792 129852380 -67343052 + L1_Mus3 LINE L1 6043 6638 0 8 1575 426 238 78 109 chr1 129852724 129852917 -67342515 - ID_B1 SINE B4 -36 188 2 8 1575 29 28 0 0 chr1 129853558 129853594 -67341838 + AT_rich Low_complexity Low_complexity 1 36 0 8 1575 763 217 62 31 chr1 129853676 129853871 -67341561 - ID_B1 SINE B4 -19 205 5 8 1575 23 33 0 0 chr1 129854543 129854573 -67340859 + AT_rich Low_complexity Low_complexity 1 30 0 8 1575 792 122 0 0 chr1 129854573 129854696 -67340736 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 8 1575 735 174 0 32 chr1 129854696 129854821 -67340611 - B1_Mur2 SINE Alu -13 136 16 8 1575 1770 144 154 6 chr1 129855131 129855474 -67339958 + ORR1B1 LTR MaLR 1 394 0 8 1575 400 296 28 39 chr1 129855932 129856111 -67339321 + GA-rich Low_complexity Low_complexity 3 179 0 8 1575 306 0 0 0 chr1 129858179 129858213 -67337219 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1575 1699 168 109 10 chr1 129858294 129858607 -67336825 + ORR1B1 LTR MaLR 35 378 -16 8 1575 466 286 79 50 chr1 129858609 129858811 -67336621 - B4A SINE B4 -82 210 3 8 1575 562 162 234 0 chr1 129859314 129859425 -67336007 - B3 SINE B2 -79 137 1 8 1575 647 270 83 0 chr1 129860020 129860224 -67335208 - ID_B1 SINE B4 0 224 4 8 1575 218 189 28 9 chr1 129860951 129861058 -67334374 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 8 1575 27 0 0 0 chr1 129861597 129861624 -67333808 + AT_rich Low_complexity Low_complexity 1 27 0 8 1575 228 111 0 0 chr1 129862963 129862999 -67332433 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 8 1575 277 246 5 24 chr1 129863044 129863146 -67332286 - ID4 SINE ID -23 129 30 8 1575 362 273 165 0 chr1 129863194 129863315 -67332117 + RSINE1 SINE B4 4 144 -21 8 1575 398 231 18 27 chr1 129863621 129863732 -67331700 - PB1D10 SINE Alu -3 114 5 8 1575 392 329 75 17 chr1 129863777 129864018 -67331414 + Charlie1a DNA MER1_type 1196 1450 -5 8 1575 243 230 216 20 chr1 129864203 129864305 -67331127 - MIR SINE MIR -59 149 28 8 1575 573 251 75 48 chr1 129864607 129864795 -67330637 + B3A SINE B2 1 193 -5 9 1575 188 342 35 26 chr1 129864946 129865060 -67330372 + L3b LINE CR1 202 316 -166 9 1575 412 195 0 13 chr1 129865320 129865398 -67330034 + ID4 SINE ID 4 80 -3 9 1575 428 257 136 56 chr1 129865598 129865796 -67329636 - B3 SINE B2 -1 215 2 9 1575 380 298 72 67 chr1 129866068 129866248 -67329184 + Kanga1c DNA Tc2 43 223 -506 9 1575 295 271 127 89 chr1 129866280 129866438 -67328994 + RSINE1 SINE B4 2 165 0 9 1575 192 77 0 0 chr1 129866439 129866465 -67328967 + (TAA)n Simple_repeat Simple_repeat 2 27 0 9 1575 389 293 196 28 chr1 129866597 129866776 -67328656 + Kanga1c DNA Tc2 437 645 -84 9 1575 198 0 0 0 chr1 129867123 129867145 -67328287 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 9 1575 264 30 0 0 chr1 129867335 129867368 -67328064 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1575 218 207 155 0 chr1 129867392 129867450 -67327982 - RSINE1 SINE B4 -77 88 22 9 1575 602 236 137 44 chr1 129867473 129867655 -67327777 - ID_B1 SINE B4 -6 218 20 9 1575 528 164 123 19 chr1 129867906 129868012 -67327420 - PB1D9 SINE Alu -3 117 1 9 1575 347 236 0 53 chr1 129867945 129868021 -67327411 - B4 SINE B4 -140 152 81 9 1575 1372 62 17 0 chr1 129868022 129868200 -67327232 - B2_Mm2 SINE B2 -2 193 13 9 1575 415 284 20 101 chr1 129868512 129868661 -67326771 - B4A SINE B4 -154 138 2 9 1575 261 83 0 0 chr1 129868709 129868745 -67326687 + (GAA)n Simple_repeat Simple_repeat 2 37 0 9 1575 1200 111 0 0 chr1 129868747 129868927 -67326505 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 9 1575 189 0 0 0 chr1 129868927 129868947 -67326485 + (CAG)n Simple_repeat Simple_repeat 2 22 0 9 1575 1060 233 5 0 chr1 129869264 129869479 -67325953 - ID_B1 SINE B4 -8 216 1 9 1575 501 248 0 0 chr1 129870192 129870293 -67325139 - PB1D9 SINE Alu -19 101 1 9 1575 725 253 39 22 chr1 129870508 129870686 -67324746 - B3 SINE B2 0 216 36 9 1575 715 284 104 20 chr1 129870706 129870907 -67324525 - B4A SINE B4 -26 266 49 9 1575 582 148 130 0 chr1 129870936 129871044 -67324388 - B1_Mus1 SINE Alu -13 135 14 9 1575 239 244 75 75 chr1 129870988 129871081 -67324351 - MT2B LTR ERVL -375 226 134 9 1575 227 304 114 46 chr1 129871103 129871234 -67324198 - L2 LINE L2 -952 2467 2328 9 1575 253 339 32 24 chr1 129871793 129871917 -67323515 + LFSINE_Vert SINE SINE 133 257 -202 9 1575 206 312 0 41 chr1 129873643 129873740 -67321692 + (CA)n Simple_repeat Simple_repeat 2 94 0 9 1575 422 291 98 79 chr1 129873792 129874046 -67321386 - HAL1 LINE L1 -1084 1423 1165 9 1575 446 243 181 14 chr1 129874158 129874296 -67321136 - RSINE1 SINE B4 0 165 5 9 1575 528 321 125 25 chr1 129875279 129875560 -67319872 - HAL1 LINE L1 -1293 1214 906 9 1575 183 80 0 0 chr1 129875719 129875744 -67319688 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1575 450 306 0 8 chr1 129875746 129875871 -67319561 - RSINE1 SINE B4 -39 126 3 9 1575 1180 217 171 87 chr1 129876177 129876731 -67318701 + MT2B LTR ERVL 1 601 0 9 1575 638 325 37 17 chr1 129876842 129877083 -67318349 - B4A SINE B4 -2 290 45 9 1575 1374 62 28 0 chr1 129877307 129877485 -67317947 - B2_Mm1t SINE B2 -8 185 3 9 1575 248 328 50 58 chr1 129878196 129878335 -67317097 + Charlie4z DNA MER1_type 22 159 -8 9 1575 781 297 48 22 chr1 129878591 129878818 -67316614 - B4A SINE B4 -58 234 2 9 1575 655 220 71 6 chr1 129879182 129879351 -67316081 + B3A SINE B2 4 183 -15 9 1575 290 253 72 0 chr1 129879607 129879690 -67315742 + ID_B1 SINE B4 125 213 -11 9 1575 405 0 0 0 chr1 129879690 129879735 -67315697 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1575 528 314 58 0 chr1 129879751 129879888 -67315544 - ID_B1 SINE B4 0 224 80 9 1575 272 341 30 75 chr1 129880054 129880271 -67315161 + RMER4B LTR ERVK 19 213 -253 9 1575 922 166 54 20 chr1 129880671 129880874 -67314558 - B3 SINE B2 -5 211 2 9 1575 357 266 42 11 chr1 129881210 129881305 -67314127 + RMER5 LTR ERV1 32 129 -405 9 1575 341 280 23 92 chr1 129881332 129881462 -67313970 - MT2B LTR ERVL -331 270 150 9 1575 562 238 9 0 chr1 129881340 129881445 -67313987 - B1F2 SINE Alu -43 106 1 9 1575 286 354 43 80 chr1 129881445 129881478 -67313954 - B4 SINE B4 -97 195 63 9 1575 610 322 68 30 chr1 129881507 129881773 -67313659 + RMER5 LTR ERV1 259 534 0 9 1575 549 0 0 0 chr1 129882440 129882501 -67312931 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 9 1575 471 305 8 45 chr1 129882663 129882797 -67312635 + RSINE1 SINE B4 4 132 -33 9 1575 268 311 9 55 chr1 129882933 129883042 -67312390 + L1MC5 LINE L1 6727 6830 -1131 9 1575 409 332 90 23 chr1 129883056 129883312 -67312120 + B4A SINE B4 1 273 -19 9 1575 606 153 0 0 chr1 129883346 129883457 -67311975 + (CA)n Simple_repeat Simple_repeat 2 112 0 9 1575 255 283 168 0 chr1 129883465 129883578 -67311854 + L1MC5 LINE L1 7109 7240 -802 9 1575 309 167 153 0 chr1 129883722 129883794 -67311638 - PB1D10 SINE Alu 0 117 35 9 1575 281 182 114 83 chr1 129883794 129883926 -67311506 - L1M5 LINE L1 -979 5167 5032 9 1575 616 289 67 39 chr1 129884139 129884423 -67311009 + B4A SINE B4 1 292 0 9 1575 555 90 0 0 chr1 129884445 129884523 -67310909 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 9 1575 2961 183 90 36 chr1 129884913 129885515 -67309917 + RMER1B Other Other 377 1010 -56 9 1575 1519 63 0 16 chr1 129885542 129885734 -67309698 + B2_Mm2 SINE B2 1 189 -6 9 1575 307 298 43 0 chr1 129885965 129886059 -67309373 + MLT1A0 LTR MaLR 39 136 -229 9 1575 1054 323 105 38 chr1 129886117 129886286 -67309146 + MLT-int LTR MaLR 1 205 -1530 9 1575 562 130 46 9 chr1 129886286 129886395 -67309037 + Lx LINE L1 6532 6644 -10 9 1575 1054 323 105 38 chr1 129886395 129886836 -67308596 + MLT-int LTR MaLR 206 652 -1083 9 1575 990 323 83 43 chr1 129887137 129887655 -67307777 + MLT-int LTR MaLR 1135 1642 -93 9 1575 547 228 210 81 chr1 129887655 129887989 -67307443 + MTE2a LTR MaLR 3 379 0 9 1575 317 356 90 92 chr1 129887989 129888002 -67307430 + MLT-int LTR MaLR 1520 1527 -53 9 1575 304 258 151 0 chr1 129888002 129888095 -67307337 + MLT1A0 LTR MaLR 1 107 -258 9 1575 2377 98 69 8 chr1 129888090 129888452 -67306980 - MTC LTR MaLR -37 384 1 9 1575 300 275 47 13 chr1 129888497 129888642 -67306790 + MLT1A0 LTR MaLR 224 372 -2 9 1575 609 224 134 78 chr1 129888949 129889128 -67306304 + B3A SINE B2 9 197 -1 9 1575 1273 228 120 53 chr1 129889674 129890050 -67305382 + MTD LTR MaLR 5 405 -14 9 1575 897 271 19 101 chr1 129891059 129891283 -67304149 + B4 SINE B4 2 223 -69 9 1575 793 164 44 15 chr1 129891283 129891419 -67304013 + B1_Mur2 SINE Alu 1 140 -9 9 1575 234 0 0 0 chr1 129891425 129891451 -67303981 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 9 1575 897 271 19 101 chr1 129891451 129891535 -67303897 + B4 SINE B4 224 291 -1 9 196 1187 192 145 61 chr1 129892211 129892522 -67302910 + ORR1D1 LTR MaLR 1 337 -37 9 1576 630 184 156 23 chr1 129892574 129892702 -67302730 + B1_Mus2 SINE Alu 2 146 -1 9 1576 630 275 0 27 chr1 129892713 129892859 -67302573 + B1_Mur1 SINE Alu 1 142 -7 9 1576 565 252 92 26 chr1 129893034 129893262 -67302170 + Lx8 LINE L1 7231 7473 0 9 1576 608 322 7 7 chr1 129893730 129893883 -67301549 - RSINE1 SINE B4 -2 163 11 9 1576 1740 185 61 28 chr1 129893943 129894169 -67301263 + ORR1D1 LTR MaLR 1 243 -131 9 1576 198 0 0 0 chr1 129894169 129894191 -67301241 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 9 1576 1740 185 61 28 chr1 129894191 129894326 -67301106 + ORR1D1 LTR MaLR 244 374 0 9 1576 1570 191 28 0 chr1 129896925 129897207 -67298225 + MTC LTR MaLR 1 290 -131 9 1576 4065 145 89 51 chr1 129897251 129898100 -67297332 - RLTR13D6 LTR ERVK -20 882 1 9 1576 312 120 20 0 chr1 129898102 129898152 -67297280 + MTC LTR MaLR 355 405 -14 9 1576 338 309 83 0 chr1 129898394 129898478 -67296954 + PB1D10 SINE Alu 2 92 -25 9 1576 272 299 35 0 chr1 129898403 129898490 -67296942 + MT2B LTR ERVL 175 264 -337 9 1576 657 250 47 40 chr1 129898509 129898659 -67296773 + B3A SINE B2 2 152 -46 9 1576 450 0 0 0 chr1 129898669 129898719 -67296713 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1576 590 254 82 65 chr1 129899210 129899516 -67295916 + MLT1A1 LTR MaLR 51 400 -8 9 1576 243 366 0 53 chr1 129899583 129899658 -67295774 + ID4 SINE ID 2 72 -11 9 1576 189 107 0 0 chr1 129899658 129899686 -67295746 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 9 1576 428 326 7 14 chr1 129899712 129899852 -67295580 + GA-rich Low_complexity Low_complexity 3 141 0 9 1576 316 321 48 62 chr1 129899853 129899999 -67295433 + HAL1-3A_ME LINE L1 2291 2434 -424 9 1576 238 274 82 41 chr1 129900055 129900177 -67295255 + L1MA7 LINE L1 6106 6232 -59 9 1576 435 304 24 8 chr1 129901100 129901226 -67294206 + B4A SINE B4 1 128 -164 9 1576 200 209 23 0 chr1 129901339 129901382 -67294050 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1576 1365 249 84 55 chr1 129901385 129901836 -67293596 + Lx8 LINE L1 6889 7352 -121 9 1576 372 43 0 0 chr1 129901869 129901915 -67293517 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1576 204 40 0 0 chr1 129901971 129901996 -67293436 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1576 697 211 16 0 chr1 129903075 129903198 -67292234 + B1_Mur1 SINE Alu 5 129 -20 9 1576 222 37 0 0 chr1 129903206 129903233 -67292199 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1576 464 218 78 63 chr1 129903457 129903648 -67291784 - B2_Mm2 SINE B2 0 195 2 9 1576 321 273 22 11 chr1 129903989 129904078 -67291354 - B1F2 SINE Alu -51 98 9 9 1576 222 300 77 39 chr1 129904078 129904093 -67291339 - ID_B1 SINE B4 -48 176 69 9 1576 210 287 236 22 chr1 129904154 129904243 -67291189 - B3A SINE B2 -90 108 1 9 1576 268 274 134 47 chr1 129904819 129904991 -67290441 + MER31B LTR ERV1 280 466 0 9 1576 350 243 0 0 chr1 129905049 129905123 -67290309 - B4A SINE B4 -208 84 11 9 1576 22 35 0 0 chr1 129905548 129905577 -67289855 + AT_rich Low_complexity Low_complexity 1 29 0 1 1576 850 160 83 0 chr1 129905714 129905883 -67289549 + B3 SINE B2 23 205 -11 1 1576 641 246 14 21 chr1 129905924 129906065 -67289367 - B3A SINE B2 -58 140 1 1 1576 432 0 0 0 chr1 129906155 129906203 -67289229 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 1 1576 1324 104 44 0 chr1 129906229 129906412 -67289020 + B2_Mm2 SINE B2 2 192 -3 1 1576 278 321 27 18 chr1 129907922 129908033 -67287399 + PB1D7 SINE Alu 6 117 -3 1 1576 630 0 0 0 chr1 129908079 129908149 -67287283 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 1 1576 409 62 31 0 chr1 129908277 129908342 -67287090 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1576 713 330 18 9 chr1 129908376 129908588 -67286844 + MTD LTR MaLR 1 214 -205 1 1576 306 284 0 87 chr1 129908588 129908646 -67286786 + B3 SINE B2 2 59 -157 1 1576 1192 100 123 0 chr1 129908646 129908816 -67286616 - B2_Mm2 SINE B2 -3 192 2 1 1576 314 195 12 23 chr1 129908816 129908901 -67286531 + B3 SINE B2 60 216 0 1 1576 666 209 191 11 chr1 129908934 129909123 -67286309 + MTD LTR MaLR 197 419 0 1 1576 25 0 0 0 chr1 129909149 129909174 -67286258 + AT_rich Low_complexity Low_complexity 1 25 0 1 1576 485 279 132 79 chr1 129910643 129910908 -67284524 + B4 SINE B4 3 281 -11 1 1576 1057 177 91 0 chr1 129911392 129911590 -67283842 - B3 SINE B2 0 216 1 1 1576 495 0 0 0 chr1 129911592 129911647 -67283785 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1576 652 263 34 29 chr1 129911731 129911935 -67283497 + B3 SINE B2 1 205 -11 1 1576 674 214 28 14 chr1 129911964 129912106 -67283326 + B1_Mur1 SINE Alu 1 144 -5 1 1576 463 236 146 73 chr1 129913533 129913794 -67281638 - B4 SINE B4 -12 280 1 1 1576 219 146 0 0 chr1 129913799 129913840 -67281592 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1576 443 252 155 9 chr1 129914462 129914578 -67280854 + B3A SINE B2 1 133 -65 1 1576 216 234 44 144 chr1 129914641 129914731 -67280701 + PB1D7 SINE Alu 12 92 -28 1 1576 744 159 98 8 chr1 129914819 129914952 -67280480 + B1_Mur4 SINE Alu 6 150 0 1 1576 2268 52 64 19 chr1 129915099 129915410 -67280022 - ORR1A1 LTR MaLR 0 346 22 1 1576 321 192 0 0 chr1 129915629 129915681 -67279751 - ID4_ SINE ID 0 83 32 1 1576 511 225 128 30 chr1 129916091 129916224 -67279208 + B1_Mur1 SINE Alu 2 147 -2 1 1576 278 155 34 17 chr1 129916485 129916544 -67278888 + ID_B1 SINE B4 165 224 0 1 1576 246 254 28 0 chr1 129916544 129916615 -67278817 + GA-rich Low_complexity Low_complexity 3 75 0 1 1576 246 95 0 0 chr1 129916651 129916693 -67278739 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1576 621 309 86 49 chr1 129916743 129917495 -67277937 - L1MB8 LINE L1 -210 5968 5197 1 1576 315 150 49 16 chr1 129917502 129917563 -67277869 - B1F SINE Alu -63 86 24 1 1576 437 270 0 0 chr1 129917557 129917646 -67277786 - RSINE1 SINE B4 -76 89 1 1 1576 843 179 13 27 chr1 129917766 129917915 -67277517 + B1_Mur3 SINE Alu 1 147 -2 1 1576 402 252 78 35 chr1 129917970 129918085 -67277347 + B1_Mur1 SINE Alu 29 148 -1 1 1576 315 0 0 0 chr1 129918205 129918240 -67277192 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1576 663 240 8 30 chr1 129918243 129918376 -67277056 - RSINE1 SINE B4 -25 140 11 1 1576 1606 232 91 105 chr1 129918649 129919332 -67276100 + Lx9 LINE L1 6970 7642 -2 1 1576 723 252 63 19 chr1 129919522 129919728 -67275704 + B3 SINE B2 2 216 0 1 1576 279 219 0 121 chr1 129920094 129920177 -67275255 - ID_B1 SINE B4 0 224 152 1 1576 3268 168 29 40 chr1 129920287 129920914 -67274518 - RMER1B Other Other -8 1058 439 1 1576 272 354 67 28 chr1 129921198 129921378 -67274054 + MER20B DNA MER1_type 284 470 -313 1 1576 198 0 0 0 chr1 129921802 129921824 -67273608 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1576 1225 75 0 0 chr1 129921824 129921971 -67273461 - B1_Mus2 SINE Alu 0 147 1 1 1576 334 299 109 18 chr1 129921992 129922213 -67273219 + MER20B DNA MER1_type 543 783 0 1 1576 407 272 23 31 chr1 129922273 129922402 -67273030 + L1MC LINE L1 3448 3575 -2571 1 1576 277 254 54 40 chr1 129922406 129922480 -67272952 + B4 SINE B4 4 78 -214 1 1576 191 317 122 56 chr1 129922586 129922693 -67272739 + L2a LINE L2 3292 3405 -21 1 1576 1368 183 134 3 chr1 129922788 129923139 -67272293 + Lx9 LINE L1 7246 7642 -2 1 1576 785 250 0 0 chr1 129923173 129923321 -67272111 - B1_Mur4 SINE Alu 0 150 3 1 1576 606 254 42 108 chr1 129923490 129923702 -67271730 + B3A SINE B2 1 198 0 1 1576 3466 72 55 4 chr1 129923935 129924410 -67271022 - L1_Mus3 LINE L1 -311 6327 5829 1 1576 21 0 0 0 chr1 129925388 129925409 -67270023 + AT_rich Low_complexity Low_complexity 1 21 0 1 1576 360 289 90 0 chr1 129925546 129925712 -67269720 + L1MB4 LINE L1 5981 6161 -19 1 1576 1015 259 0 0 chr1 129926155 129926344 -67269088 - B3 SINE B2 -27 189 1 1 1576 2425 166 82 48 chr1 129926835 129927382 -67268050 + RLTR17 LTR ERVK 98 601 -91 1 1576 897 184 13 20 chr1 129927479 129927629 -67267803 - B1_Mur1 SINE Alu 0 149 1 1 1576 437 308 101 13 chr1 129928415 129928573 -67266859 + B3A SINE B2 2 173 -25 1 1576 902 170 133 35 chr1 129928821 129929047 -67266385 + ORR1D1 LTR MaLR 127 374 0 1 1576 324 247 74 0 chr1 129929173 129929254 -67266178 - B1_Mus2 SINE Alu -58 89 3 1 1576 249 282 11 76 chr1 129929177 129929269 -67266163 - B4A SINE B4 -129 163 78 1 1576 207 0 0 0 chr1 129929743 129929766 -67265666 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1 1576 431 186 64 23 chr1 129930075 129930184 -67265248 - PB1D9 SINE Alu -5 112 10 1 1576 225 288 15 15 chr1 129930249 129930316 -67265116 - ID4 SINE ID -9 74 8 1 1576 349 264 132 24 chr1 129930372 129930539 -67264893 - B4A SINE B4 0 292 108 1 1576 749 250 85 23 chr1 129930848 129931106 -67264326 - L1MB7 LINE L1 0 6184 5911 1 1576 276 293 137 11 chr1 129931147 129931337 -67264095 + L1M4 LINE L1 3033 3246 -2900 1 1576 367 278 17 42 chr1 129931627 129931747 -67263685 + B4A SINE B4 132 248 -44 1 1576 3715 127 43 19 chr1 129931810 129932443 -67262989 - RMER6A LTR ERVK 0 756 109 1 1576 477 252 0 10 chr1 129932611 129932715 -67262717 + PB1D9 SINE Alu 17 119 -1 1 1576 227 140 20 0 chr1 129932716 129932766 -67262666 + A-rich Low_complexity Low_complexity 4 54 0 1 1576 568 324 16 21 chr1 129933969 129934155 -67261277 - B4A SINE B4 -6 286 102 1 1576 225 0 0 0 chr1 129935599 129935624 -67259808 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1576 598 284 37 0 chr1 129935832 129935966 -67259466 - B1_Mus2 SINE Alu -8 139 1 1 1576 730 189 8 0 chr1 129935976 129936103 -67259329 - B1_Mur1 SINE Alu -8 141 14 1 1576 1453 86 11 0 chr1 129936303 129936490 -67258942 + B2_Mm2 SINE B2 1 189 -6 1 1576 1324 41 0 0 chr1 129936968 129937115 -67258317 + B1_Mus2 SINE Alu 1 147 0 1 1576 249 238 16 16 chr1 129938071 129938135 -67257297 + L1MD LINE L1 5691 5754 -488 1 1576 1013 279 27 31 chr1 129938497 129938789 -67256643 + B4A SINE B4 2 292 0 1 1576 202 234 0 0 chr1 129939465 129939512 -67255920 + A-rich Low_complexity Low_complexity 1 47 0 1 1576 449 271 0 9 chr1 129939627 129939735 -67255697 - Lx7 LINE L1 -24 5856 5750 1 1576 454 256 94 22 chr1 129939732 129939912 -67255520 + Lx7 LINE L1 5847 6039 -1657 1 1576 451 311 159 10 chr1 129939921 129940116 -67255316 + Lx8 LINE L1 6559 6782 -691 1 1576 406 314 70 13 chr1 129940115 129940273 -67255159 + Lx7 LINE L1 6905 7071 -625 1 1576 242 269 464 0 chr1 129940281 129940419 -67255013 + Lx8 LINE L1 7137 7338 -135 1 1576 28 0 0 0 chr1 129940490 129940518 -67254914 + AT_rich Low_complexity Low_complexity 1 28 0 1 1576 660 293 55 20 chr1 129940522 129940724 -67254708 + ID_B1 SINE B4 16 224 0 1 1576 1255 48 7 7 chr1 129941154 129941301 -67254131 - B1_Mus2 SINE Alu 0 147 1 1 1576 2434 193 20 159 chr1 129941344 129942054 -67253378 + RMER19C LTR ERVK 1 611 0 1 1576 190 73 0 47 chr1 129942116 129942159 -67253273 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 1576 1246 55 0 7 chr1 129942159 129942306 -67253126 - B1_Mus2 SINE Alu 0 147 2 1 1576 2124 103 43 7 chr1 129942837 129943140 -67252292 - L1Md_F2 LINE L1 -2 6580 6267 1 1576 218 156 16 0 chr1 129944041 129944105 -67251327 + GA-rich Low_complexity Low_complexity 2 66 0 1 1576 818 251 58 11 chr1 129944609 129944798 -67250634 - B3A SINE B2 0 198 1 1 1576 1778 112 7 59 chr1 129945274 129945577 -67249855 + ORR1A4 LTR MaLR 1 287 -42 1 1576 1142 97 14 0 chr1 129945577 129945721 -67249711 + B1_Mus1 SINE Alu 2 147 -1 1 1576 201 136 0 43 chr1 129945722 129945768 -67249664 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1576 311 62 0 94 chr1 129945770 129945823 -67249609 + ORR1A4 LTR MaLR 274 321 -8 1 1576 204 200 0 0 chr1 129946134 129946184 -67249248 + (CCA)n Simple_repeat Simple_repeat 1 50 0 1 1576 248 292 62 0 chr1 129946250 129946315 -67249117 + B3A SINE B2 120 188 -10 1 1576 517 269 8 0 chr1 129946360 129946479 -67248953 + PB1D9 SINE Alu 1 120 0 1 1576 812 225 158 11 chr1 129946531 129946715 -67248717 + ID_B1 SINE B4 5 215 -9 1 1576 846 283 49 111 chr1 129947304 129947693 -67247739 + MTE2a LTR MaLR 3 367 -12 1 1576 295 294 38 6 chr1 129948302 129948417 -67247015 + B1F SINE Alu 7 148 -1 1 1576 210 192 0 0 chr1 129948418 129948470 -67246962 + A-rich Low_complexity Low_complexity 1 52 0 1 1576 189 0 0 0 chr1 129948557 129948578 -67246854 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1576 1218 63 138 0 chr1 129948588 129948747 -67246685 + B2_Mm2 SINE B2 1 181 -14 1 1576 534 221 97 0 chr1 129948878 129948991 -67246441 + B1_Mur4 SINE Alu 13 136 -14 1 1576 504 0 0 0 chr1 129948993 129949049 -67246383 + (CAAAC)n Simple_repeat Simple_repeat 2 57 0 1 1576 23 33 0 0 chr1 129949325 129949355 -67246077 + AT_rich Low_complexity Low_complexity 1 30 0 1 1576 750 271 87 36 chr1 129949410 129949663 -67245769 + MLT1C LTR MaLR 2 267 -200 1 1576 562 146 246 0 chr1 129949720 129949830 -67245602 + B1_Mur4 SINE Alu 2 138 -12 1 1576 3074 55 48 3 chr1 129949830 129950209 -67245223 - MTB LTR MaLR -4 396 1 1 1576 383 218 108 10 chr1 129950345 129950447 -67244985 + MLT1C LTR MaLR 350 461 -6 1 1576 491 298 56 62 chr1 129950468 129950647 -67244785 + B3A SINE B2 20 197 -1 1 1576 22 0 0 0 chr1 129950647 129950669 -67244763 + AT_rich Low_complexity Low_complexity 1 22 0 1 1576 1086 229 57 147 chr1 129950734 129951190 -67244242 - MTD LTR MaLR 0 419 5 1 1576 204 125 0 0 chr1 129952230 129952262 -67243170 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1576 1291 48 0 0 chr1 129952265 129952410 -67243022 - B1_Mus2 SINE Alu 0 147 3 1 1576 688 150 62 0 chr1 129952497 129952610 -67242822 - B1_Mus1 SINE Alu -28 120 1 1 1576 23 33 0 0 chr1 129952621 129952651 -67242781 + AT_rich Low_complexity Low_complexity 1 30 0 1 1576 687 314 30 38 chr1 129952861 129953126 -67242306 + B4A SINE B4 10 272 -20 1 1576 2526 50 6 3 chr1 129953554 129953875 -67241557 - ORR1A2 LTR MaLR 0 327 6 1 1576 894 260 142 24 chr1 129953923 129954254 -67241178 + ORR1D2 LTR MaLR 1 370 0 1 1576 686 183 22 22 chr1 129954935 129955062 -67240370 + B1_Mur1 SINE Alu 16 143 -6 1 1576 258 105 0 0 chr1 129955062 129955100 -67240332 + (TAGG)n Simple_repeat Simple_repeat 2 39 0 1 1576 827 264 57 98 chr1 129955128 129955515 -67239917 - MTE2a LTR MaLR -8 371 1 1 1576 1111 122 0 0 chr1 129955624 129955771 -67239661 - B1_Mur3 SINE Alu 0 149 3 1 1576 609 263 83 6 chr1 129955901 129956058 -67239374 - B4A SINE B4 -123 169 1 1 1576 500 281 91 7 chr1 129956507 129956661 -67238771 + B4A SINE B4 118 284 -8 1 1576 1545 73 0 15 chr1 129956698 129956893 -67238539 + B2_Mm2 SINE B2 3 194 -1 1 1576 3810 198 173 72 chr1 129957701 129958897 -67236535 + RLTR21 LTR ERVK 1 1317 -255 1 1576 257 200 123 0 chr1 129958905 129958970 -67236462 + RMER12B LTR ERVK 1332 1404 0 1 1576 631 255 6 46 chr1 129959169 129959342 -67236090 + B3A SINE B2 1 166 -32 1 1576 1322 99 11 32 chr1 129960116 129960304 -67235128 + B2_Mm1t SINE B2 2 185 -8 1 1576 693 82 0 0 chr1 129960308 129960405 -67235027 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 1 1576 351 222 120 22 chr1 129960942 129961034 -67234398 + PB1D9 SINE Alu 20 120 0 1 1576 459 269 117 0 chr1 129961052 129961197 -67234235 + B3A SINE B2 27 188 -10 1 1576 1637 143 129 0 chr1 129963476 129963770 -67231662 - ORR1C1 LTR MaLR -10 368 37 1 1576 373 248 43 68 chr1 129963769 129963886 -67231546 + MTE2a LTR MaLR 266 379 0 1 1576 603 260 138 6 chr1 129964429 129964603 -67230829 + B3 SINE B2 1 197 -19 1 1576 633 147 0 0 chr1 129964786 129964895 -67230537 + (TA)n Simple_repeat Simple_repeat 1 109 0 1 1576 499 239 43 34 chr1 129964903 129965020 -67230412 + RSINE1 SINE B4 4 121 -44 1 1576 776 188 62 0 chr1 129965242 129965402 -67230030 + MTEa LTR MaLR 210 379 0 1 1576 22 0 0 0 chr1 129965437 129965459 -67229973 + AT_rich Low_complexity Low_complexity 1 22 0 1 1576 414 286 31 68 chr1 129965542 129965733 -67229699 - RLTR23 LTR ERV1 -2 428 245 1 1576 1912 113 30 61 chr1 129966243 129966573 -67228859 + ORR1A4 LTR MaLR 3 322 -7 1 1576 1063 58 147 13 chr1 129966939 129967096 -67228336 + B2_Mm2 SINE B2 2 179 -16 1 1576 666 109 0 0 chr1 129967096 129967197 -67228235 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 1576 226 154 0 0 chr1 129967197 129967236 -67228196 + MER5B DNA MER1_type 131 169 -9 1 1576 222 238 0 137 chr1 129967378 129967451 -67227981 + ID4_ SINE ID 2 64 -19 1 1576 483 33 0 0 chr1 129967460 129967521 -67227911 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1576 787 187 0 12 chr1 129967774 129967947 -67227485 + G-rich Low_complexity Low_complexity 1 171 0 1 1576 755 203 34 27 chr1 129968018 129968165 -67227267 + B1_Mur2 SINE Alu 2 149 0 1 1576 754 195 2 3 chr1 129968468 129968606 -67226826 + B1_Mus2 SINE Alu 1 137 -12 1 1576 1641 198 132 11 chr1 129968671 129969044 -67226388 - MTD LTR MaLR -13 406 1 1 1576 629 300 36 0 chr1 129969044 129969176 -67226256 + RSINE1 SINE B4 14 150 -15 1 1576 628 282 14 7 chr1 129969339 129969482 -67225950 - RSINE1 SINE B4 -19 146 3 1 1576 264 176 20 0 chr1 129969883 129969934 -67225498 + B4A SINE B4 9 60 -232 1 1576 1874 141 107 12 chr1 129969943 129970280 -67225152 - RMER4A LTR ERVK -97 369 1 1 1576 1586 103 87 0 chr1 129970280 129970514 -67224918 + ORR1B2 LTR MaLR 113 367 0 1 1576 1353 297 52 48 chr1 129971069 129971106 -67224326 - MER44B DNA MER2_type 0 550 524 1 1576 1449 76 43 0 chr1 129971106 129971291 -67224141 + B2_Mm2 SINE B2 1 193 -2 1 1576 1353 297 52 48 chr1 129971291 129971797 -67223635 - MER44B DNA MER2_type -27 523 5 1 1576 231 342 60 33 chr1 129972020 129972171 -67223261 + L2 LINE L2 1714 1868 -1551 1 1576 378 311 38 0 chr1 129972429 129972535 -67222897 + B1F SINE Alu 25 134 -15 1 1576 465 66 0 0 chr1 129972549 129972610 -67222822 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 1576 24 32 0 0 chr1 129974382 129974413 -67221019 + AT_rich Low_complexity Low_complexity 1 31 0 1 1576 639 258 40 46 chr1 129974854 129975029 -67220403 - B3A SINE B2 -3 195 22 1 1576 694 192 15 46 chr1 129975029 129975160 -67220272 - B1_Mur2 SINE Alu -20 129 3 1 1576 252 231 48 60 chr1 129975180 129975263 -67220169 + L1M7 LINE L1 814 895 -5323 1 1576 236 288 30 0 chr1 129975636 129975702 -67219730 - ID_B1 SINE B4 -49 175 108 1 1576 254 271 14 28 chr1 129975945 129976013 -67219419 + ID_B1 SINE B4 103 169 -55 1 1576 963 64 143 0 chr1 129976013 129976153 -67219279 + B2_Mm2 SINE B2 2 161 -34 1 1576 198 91 0 0 chr1 129976156 129976189 -67219243 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 1 1576 237 310 14 0 chr1 129976210 129976281 -67219151 + ID_B1 SINE B4 151 222 -2 1 1576 834 236 44 90 chr1 129976421 129976742 -67218690 - ORR1C2 LTR MaLR -5 379 74 1 1576 1185 58 0 0 chr1 129976755 129976892 -67218540 + B1_Mm SINE Alu 1 137 -10 1 1576 228 35 0 0 chr1 129976892 129976921 -67218511 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1576 23 33 0 0 chr1 129976996 129977026 -67218406 + AT_rich Low_complexity Low_complexity 1 30 0 1 1576 1019 223 125 11 chr1 129977199 129977471 -67217961 + MTD LTR MaLR 117 419 0 1 1576 605 236 80 13 chr1 129978079 129978229 -67217203 + RSINE1 SINE B4 2 161 -4 1 1576 299 264 6 17 chr1 129978610 129978728 -67216704 + L1MA4 LINE L1 5491 5607 -582 1 1576 492 284 52 0 chr1 129978729 129978863 -67216569 + B1F2 SINE Alu 1 141 -8 1 1576 704 319 33 22 chr1 129978885 129979280 -67216152 + L1MA4 LINE L1 5599 5996 -304 1 1576 341 268 8 108 chr1 129979291 129979411 -67216021 + RSINE1 SINE B4 36 144 -21 1 1576 1919 255 103 85 chr1 129979336 129980254 -67215178 - RMER17B LTR ERVK -23 935 1 1 1576 239 234 0 21 chr1 129980254 129980297 -67215135 + RSINE1 SINE B4 109 150 -15 1 1576 22 35 0 0 chr1 129980306 129980335 -67215097 + AT_rich Low_complexity Low_complexity 1 29 0 1 1576 691 274 77 11 chr1 129980338 129980519 -67214913 + B3A SINE B2 6 198 0 1 1576 504 302 92 40 chr1 129980538 129980811 -67214621 + B4A SINE B4 2 288 -4 1 1576 327 96 0 0 chr1 129980823 129980875 -67214557 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1576 403 335 12 18 chr1 129980987 129981154 -67214278 - MER3 DNA MER1_type -42 167 2 1 1576 444 246 168 8 chr1 129981798 129981929 -67213503 + RSINE1 SINE B4 11 162 -3 1 1576 31 0 0 0 chr1 129981939 129981970 -67213462 + AT_rich Low_complexity Low_complexity 1 31 0 1 1576 536 286 22 15 chr1 129981997 129982132 -67213300 + RSINE1 SINE B4 11 146 -19 1 1576 475 336 0 0 chr1 129982238 129982351 -67213081 + RSINE1 SINE B4 47 159 -6 1 1576 1264 48 14 0 chr1 129982396 129982542 -67212890 + B1_Mus1 SINE Alu 1 148 0 1 1576 213 82 20 39 chr1 129982542 129982593 -67212839 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1576 270 277 145 72 chr1 129982619 129982771 -67212661 + MLT1C LTR MaLR 305 467 0 1 1576 342 314 43 105 chr1 129983066 129983276 -67212156 - RMER30 DNA MER1_type -1 201 5 1 1576 527 243 27 0 chr1 129983283 129983394 -67212038 + B3 SINE B2 9 122 -94 1 1576 19827 45 2 6 chr1 129983739 129986138 -67209294 + IAPEy-int LTR ERVK 5123 7513 0 1 1576 3414 47 5 0 chr1 129986138 129986521 -67208911 + IAPEY_LTR LTR ERVK 1 385 0 1 1576 357 277 0 12 chr1 129986521 129986605 -67208827 + RSINE1 SINE B4 71 153 -12 1 1576 705 187 80 29 chr1 129986634 129986772 -67208660 + B1_Mur4 SINE Alu 1 145 -5 1 1576 234 293 35 70 chr1 129986775 129986918 -67208514 + L1ME2z LINE L1 6171 6308 -136 1 1576 3053 38 18 0 chr1 129987053 129987393 -67208039 + ORR1A1 LTR MaLR 1 346 0 1 1576 387 283 314 45 chr1 129987455 129987754 -67207678 + ORR1E LTR MaLR 1 379 0 1 1576 748 197 21 14 chr1 129987932 129988076 -67207356 + B1_Mm SINE Alu 1 145 -2 1 1576 383 270 70 0 chr1 129988087 129988187 -67207245 + RSINE1 SINE B4 47 153 -12 1 1576 213 330 9 74 chr1 129988906 129988934 -67206498 - ID_B1 SINE B4 -119 105 5 1 1576 227 288 12 88 chr1 129988934 129989014 -67206418 - ID4 SINE ID -5 78 5 1 1576 453 36 0 0 chr1 129989014 129989069 -67206363 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 1 1576 530 295 30 8 chr1 129989101 129989234 -67206198 + RSINE1 SINE B4 12 147 -18 1 1576 1659 38 5 0 chr1 129989304 129989489 -67205943 - B2_Mm1t SINE B2 -6 187 2 1 1576 504 213 46 9 chr1 129989546 129989655 -67205777 + B1_Mur1 SINE Alu 29 141 -8 1 1576 180 111 0 0 chr1 129990097 129990124 -67205308 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1 1576 411 73 0 0 chr1 129990180 129990235 -67205197 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1576 231 240 41 10 chr1 129990237 129990334 -67205098 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1576 194 0 39 0 chr1 129990584 129990610 -67204822 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1576 1193 65 0 0 chr1 129990610 129990748 -67204684 - B1_Mus2 SINE Alu -9 138 1 1 1576 311 60 0 20 chr1 129991289 129991340 -67204092 + (CCCCCA)n Simple_repeat Simple_repeat 1 50 0 1 1576 432 294 140 45 chr1 129991340 129991718 -67203714 + L2a LINE L2 2924 3337 -89 1 1576 302 246 14 58 chr1 129991719 129991788 -67203644 - ID4_ SINE ID -1 82 17 1 1576 259 219 11 50 chr1 129991806 129991886 -67203546 - PB1 SINE Alu -2 125 50 1 1576 180 241 185 0 chr1 129991886 129991940 -67203492 + L2b LINE L2 3290 3353 -22 1 1576 743 154 13 128 chr1 129991967 129992123 -67203309 + B1_Mur3 SINE Alu 2 139 -10 1 1576 226 159 22 43 chr1 129992382 129992428 -67203004 - B3 SINE B2 -171 45 1 1 1576 1638 164 229 11 chr1 129992692 129993055 -67202377 - RMER10A LTR ERVL 0 442 1 1 1576 180 0 0 0 chr1 129993182 129993202 -67202230 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1576 1222 76 0 7 chr1 129993202 129993342 -67202090 - B1_Mus1 SINE Alu -8 140 1 1 1576 1526 63 15 30 chr1 129993342 129993538 -67201894 - B2_Mm2 SINE B2 0 195 2 1 1576 494 314 35 28 chr1 129993595 129993736 -67201696 - RSINE1 SINE B4 -21 144 3 1 1576 2306 127 116 27 chr1 129993754 129994159 -67201273 + RMER10A LTR ERVL 1 441 -1 1 1576 611 202 17 0 chr1 129994338 129994457 -67200975 + ID_B1 SINE B4 102 222 -2 1 1576 22 35 0 0 chr1 129994713 129994742 -67200690 + AT_rich Low_complexity Low_complexity 1 29 0 1 1576 1011 146 0 7 chr1 129994813 129994958 -67200474 - B1_Mur3 SINE Alu -5 144 1 1 1576 822 265 70 80 chr1 129995136 129995351 -67200081 + B4A SINE B4 3 229 -63 1 1576 1218 62 0 0 chr1 129995351 129995497 -67199935 + B1_Mus2 SINE Alu 2 147 0 1 1576 822 265 70 80 chr1 129995497 129995568 -67199864 + B4A SINE B4 230 286 -6 1 1576 321 272 97 0 chr1 129995701 129995815 -67199617 + RSINE1 SINE B4 5 129 -36 1 1576 784 293 138 18 chr1 129995842 129996276 -67199156 + L1MB1 LINE L1 5683 6168 0 1 1576 5745 103 62 2 chr1 129996482 129997331 -67198101 + Lx3A LINE L1 6075 6974 -7 1 1576 755 225 152 8 chr1 129997352 129997555 -67197877 + B3 SINE B2 1 210 -6 1 1576 299 209 15 15 chr1 129997580 129997648 -67197784 + PB1D9 SINE Alu 2 69 -51 1 1576 514 198 151 0 chr1 129998779 129998905 -67196527 - B1F SINE Alu -4 145 1 1 1576 851 126 7 0 chr1 130001033 130001168 -67194264 - B1_Mur4 SINE Alu -14 136 1 1 1576 491 268 16 16 chr1 130002224 130002349 -67193083 - RSINE1 SINE B4 -37 128 4 2 1576 292 311 14 0 chr1 130002711 130002785 -67192647 - ID4_ SINE ID 0 83 9 3 1576 722 175 16 8 chr1 130003946 130004073 -67191359 - B1_Mur3 SINE Alu -20 129 2 4 1576 1002 218 14 5 chr1 130004093 130004305 -67191127 - B3 SINE B2 -1 215 2 5 1576 706 262 55 75 chr1 130004872 130005203 -67190229 + L1MD2 LINE L1 5730 6077 -102 6 1576 1204 27 7 0 chr1 130005297 130005443 -67189989 - B1_Mm SINE Alu 0 147 1 7 1576 362 156 0 15 chr1 130005466 130005531 -67189901 - B1_Mur1 SINE Alu -4 145 82 8 1576 342 0 0 0 chr1 130005537 130005575 -67189857 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 9 1576 685 187 7 36 chr1 130005596 130005735 -67189697 - B1_Mus1 SINE Alu -13 135 1 1 1576 272 120 20 0 chr1 130006045 130006095 -67189337 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1 1576 25 0 0 0 chr1 130006221 130006246 -67189186 + AT_rich Low_complexity Low_complexity 1 25 0 1 1576 690 195 6 45 chr1 130006318 130006474 -67188958 + B1_Mur4 SINE Alu 1 150 0 1 1576 721 262 24 38 chr1 130006523 130006733 -67188699 - B3 SINE B2 -9 207 1 1 1576 1223 34 0 0 chr1 130007040 130007187 -67188245 + B1_Mus2 SINE Alu 1 147 0 1 1576 291 238 11 35 chr1 130007235 130007322 -67188110 - L1M4 LINE L1 -1526 4620 4536 1 1576 328 307 74 53 chr1 130007895 130008084 -67187348 - B3A SINE B2 -3 195 3 1 1576 718 179 42 14 chr1 130008188 130008330 -67187102 - B1_Mur4 SINE Alu 0 150 5 1 1576 206 116 0 23 chr1 130008366 130008410 -67187022 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1576 510 125 0 0 chr1 130008451 130008531 -67186901 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1576 198 0 0 0 chr1 130008531 130008552 -67186880 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1576 1024 83 185 0 chr1 130008964 130009121 -67186311 + B2_Mm2 SINE B2 1 186 -9 2 1576 285 146 0 0 chr1 130009211 130009259 -67186173 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1576 3537 74 8 34 chr1 130009369 130009874 -67185558 - L1Md_F2 LINE L1 0 6582 6091 2 1576 4470 56 0 0 chr1 130009875 130010465 -67184967 - L1Md_F2 LINE L1 -664 5918 5329 2 1576 237 333 124 44 chr1 130011028 130011141 -67184291 - RSINE1 SINE B4 -1 164 43 2 1576 189 74 0 0 chr1 130011638 130011665 -67183767 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 1576 1015 88 0 22 chr1 130011790 130011929 -67183503 + B1_Mus2 SINE Alu 2 137 -10 2 1576 315 0 0 0 chr1 130011929 130011964 -67183468 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1576 1017 322 52 110 chr1 130012009 130012589 -67182843 - MER44B DNA MER2_type -4 546 1 2 1576 444 400 19 0 chr1 130012849 130013009 -67182423 - RSINE1 SINE B4 0 165 3 3 1576 946 142 0 26 chr1 130013214 130013366 -67182066 + B1_Mur4 SINE Alu 2 149 -1 3 1576 260 362 59 20 chr1 130013426 130013578 -67181854 + Tigger15a DNA TcMar 312 469 -246 3 1576 196 130 0 42 chr1 130013588 130013636 -67181796 + (TTG)n Simple_repeat Simple_repeat 2 47 0 3 1576 470 211 34 42 chr1 130014059 130014178 -67181254 + PB1D9 SINE Alu 3 120 0 3 1576 215 236 77 77 chr1 130014401 130014479 -67180953 + PB1D10 SINE Alu 23 100 -17 3 1576 271 250 0 101 chr1 130014785 130014874 -67180558 + PB1D10 SINE Alu 38 117 0 3 1576 276 320 0 0 chr1 130015020 130015114 -67180318 - ID4 SINE ID -55 97 4 3 1576 324 326 23 0 chr1 130015120 130015206 -67180226 - PB1 SINE Alu -7 120 33 3 1576 291 276 13 13 chr1 130015443 130015520 -67179912 + B1F1 SINE Alu 47 123 -26 3 1576 1202 290 106 42 chr1 130015609 130016347 -67179085 - L1MB8 LINE L1 -25 6153 5369 4 1576 846 160 20 34 chr1 130016543 130016692 -67178740 + B1_Mus1 SINE Alu 2 148 0 4 1576 381 326 136 14 chr1 130016704 130016844 -67178588 - RSINE1 SINE B4 -4 161 5 4 1576 688 141 27 75 chr1 130017423 130017569 -67177863 - B1_Mur3 SINE Alu 0 149 11 4 1576 884 181 29 23 chr1 130017591 130017766 -67177666 - B2_Mm2 SINE B2 -18 177 2 4 1576 260 140 0 0 chr1 130018246 130018296 -67177136 - B3 SINE B2 0 216 167 4 1576 452 215 290 25 chr1 130018346 130018508 -67176924 - B3 SINE B2 -10 206 2 4 1576 1607 57 0 0 chr1 130018584 130018777 -67176655 + B2_Mm1t SINE B2 1 193 0 4 1576 515 278 111 62 chr1 130018835 130019095 -67176337 + MTE-int LTR MaLR 214 516 -1064 4 1576 1060 37 8 0 chr1 130019233 130019367 -67176065 - B1_Mm SINE Alu 0 147 13 4 1576 2122 323 73 21 chr1 130019375 130020211 -67175221 + MTE-int LTR MaLR 672 1550 -30 4 1576 413 341 66 92 chr1 130020315 130020619 -67174813 + ORR1E LTR MaLR 64 359 0 5 1576 1333 84 10 21 chr1 130020679 130020873 -67174559 - B2_Mm2 SINE B2 -2 193 2 5 1576 1270 161 89 26 chr1 130021634 130021926 -67173506 - ORR1B2 LTR MaLR -8 359 1 5 1576 258 154 0 0 chr1 130022176 130022215 -67173217 - U2 snRNA snRNA -149 39 1 5 1576 312 274 102 64 chr1 130022709 130022757 -67172675 - B2_Mm2 SINE B2 -1 194 152 5 1576 261 0 0 0 chr1 130022757 130022786 -67172646 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 5 1576 412 274 102 64 chr1 130022786 130022924 -67172508 - B3 SINE B2 -44 151 1 5 1576 897 254 17 0 chr1 130023099 130023280 -67172152 + B3 SINE B2 32 215 -1 5 1577 524 223 207 5 chr1 130023577 130023775 -67171657 - L1MB3 LINE L1 -192 5991 5754 5 1577 932 260 162 40 chr1 130023802 130024154 -67171278 + MTC LTR MaLR 13 407 -14 5 1577 416 289 98 49 chr1 130024169 130024382 -67171050 - L1MB3 LINE L1 -587 5596 5363 5 1577 1538 67 0 0 chr1 130024382 130024575 -67170857 - B2_Mm1a SINE B2 0 193 1 5 1577 416 289 98 49 chr1 130024575 130024648 -67170784 - L1MB3 LINE L1 -821 5362 5296 5 1577 597 278 101 9 chr1 130026076 130026294 -67169138 + MLT1C LTR MaLR 3 240 -227 6 1577 277 260 137 62 chr1 130026611 130026918 -67168514 + L1MB8 LINE L1 5590 5919 -259 6 1577 22 35 0 0 chr1 130026999 130027028 -67168404 + AT_rich Low_complexity Low_complexity 1 29 0 6 1577 528 278 57 10 chr1 130028417 130028610 -67166822 + MER3 DNA MER1_type 7 208 -1 6 1577 275 319 84 36 chr1 130028664 130028830 -67166602 + MIR SINE MIR 89 262 0 6 1577 27 0 0 0 chr1 130028890 130028917 -67166515 + AT_rich Low_complexity Low_complexity 1 27 0 6 1577 416 277 93 17 chr1 130028961 130029087 -67166345 - B3A SINE B2 -92 124 1 6 1577 293 280 13 0 chr1 130029369 130029444 -67165988 - ID4_ SINE ID -6 77 2 6 1577 306 358 0 32 chr1 130029444 130029568 -67165864 - ID_B1 SINE B4 -3 221 102 6 1577 221 344 33 0 chr1 130029514 130029575 -67165857 - AluF_3 SINE Alu -100 211 149 6 1577 264 89 0 186 chr1 130030393 130030490 -67164942 - Lx4B LINE L1 -4 7054 6976 7 1577 332 71 0 40 chr1 130030493 130030552 -67164880 + Lx4B LINE L1 6877 6946 -112 7 1577 230 308 0 71 chr1 130031084 130031154 -67164278 + MLT1J2 LTR MaLR 258 322 -126 7 1577 228 67 0 0 chr1 130031690 130031720 -67163712 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1577 1201 41 0 0 chr1 130031720 130031867 -67163565 - B1_Mus1 SINE Alu 0 148 2 7 1577 766 216 0 0 chr1 130031999 130032133 -67163299 - B1_Mur2 SINE Alu -7 142 9 7 1577 301 221 35 105 chr1 130032056 130032142 -67163290 - MT2B LTR ERVL -361 240 161 7 1577 1351 102 5 0 chr1 130032149 130032336 -67163096 - B2_Mm2 SINE B2 -7 188 1 7 1577 406 304 66 20 chr1 130032355 130032506 -67162926 + B4 SINE B4 1 158 -134 7 1577 233 263 18 0 chr1 130032515 130032572 -67162860 - MTC LTR MaLR -352 69 12 7 1577 21 36 0 0 chr1 130033183 130033211 -67162221 + AT_rich Low_complexity Low_complexity 1 28 0 7 1577 672 181 87 0 chr1 130033765 130033903 -67161529 - B1_Mur4 SINE Alu 0 150 1 8 1577 271 289 19 0 chr1 130034317 130034393 -67161039 + ID4_ SINE ID 5 82 -70 8 1577 1173 34 7 14 chr1 130034661 130034809 -67160623 - B1_Mm SINE Alu 0 147 1 8 1577 252 0 0 0 chr1 130035245 130035273 -67160159 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1577 252 250 16 48 chr1 130035600 130035663 -67159769 + PB1D10 SINE Alu 43 103 -14 8 1577 207 0 0 0 chr1 130035915 130035938 -67159494 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 1577 1102 95 0 0 chr1 130035944 130036091 -67159341 - B1_Mus2 SINE Alu 0 147 1 8 1577 686 179 63 19 chr1 130036198 130036357 -67159075 - B2_Mm2 SINE B2 -29 166 1 8 1577 180 0 0 0 chr1 130037996 130038016 -67157416 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1577 29 28 0 0 chr1 130038045 130038081 -67157351 + AT_rich Low_complexity Low_complexity 1 36 0 8 1577 623 202 9 9 chr1 130038087 130038202 -67157230 + PB1D9 SINE Alu 6 120 0 9 1577 186 118 0 0 chr1 130039409 130039443 -67155989 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1577 803 70 9 0 chr1 130039835 130039950 -67155482 - B1_Mus2 SINE Alu 0 147 32 9 1577 248 253 0 48 chr1 130040152 130040235 -67155197 + CT-rich Low_complexity Low_complexity 4 82 0 9 1577 1343 66 22 0 chr1 130040637 130040818 -67154614 - B2_Mm1t SINE B2 -7 186 2 9 1577 270 279 0 48 chr1 130041278 130041361 -67154071 - ID4_ SINE ID 0 83 5 9 1577 2146 100 15 59 chr1 130042216 130042557 -67152875 - ORR1A2 LTR MaLR 0 327 2 9 1577 576 0 0 0 chr1 130042557 130042621 -67152811 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 9 1577 791 272 3 39 chr1 130042698 130042899 -67152533 - B3A SINE B2 -12 204 6 9 1577 21 57 0 0 chr1 130042903 130042938 -67152494 + AT_rich Low_complexity Low_complexity 1 35 0 9 1577 339 245 325 13 chr1 130043792 130043949 -67151483 - ID_B1 SINE B4 -16 208 3 1 1577 363 223 143 0 chr1 130045129 130045241 -67150191 + B1_Mur1 SINE Alu 3 130 -19 1 1577 617 313 177 9 chr1 130046382 130046614 -67148818 - B4 SINE B4 -18 274 4 1 1577 696 162 0 0 chr1 130046651 130046762 -67148670 - B1_Mus2 SINE Alu 0 147 37 1 1577 352 202 133 57 chr1 130047531 130047636 -67147796 + PB1D9 SINE Alu 1 113 -7 1 1577 237 128 0 0 chr1 130048705 130048752 -67146680 + (CTTG)n Simple_repeat Simple_repeat 4 50 0 1 1577 835 168 28 0 chr1 130050080 130050223 -67145209 - B1_Mus1 SINE Alu 0 148 2 1 1577 374 374 126 17 chr1 130050653 130050947 -67144485 - MLT1H1 LTR MaLR -228 327 2 1 1577 244 271 178 0 chr1 130050988 130051106 -67144326 - MTEb LTR MaLR 0 379 241 1 1577 686 285 22 44 chr1 130051442 130051622 -67143810 + B4A SINE B4 1 176 -116 1 1577 381 344 37 31 chr1 130051799 130051961 -67143471 - RSINE1 SINE B4 0 165 3 1 1577 218 328 14 92 chr1 130051952 130052093 -67143339 + PB1D10 SINE Alu 2 139 -10 1 1577 21 0 0 0 chr1 130052369 130052390 -67143042 + AT_rich Low_complexity Low_complexity 1 21 0 1 1577 386 279 63 21 chr1 130052450 130052593 -67142839 - B1F1 SINE Alu 0 149 1 1 1577 23 33 0 0 chr1 130054609 130054639 -67140793 + AT_rich Low_complexity Low_complexity 1 30 0 1 1577 4241 50 0 9 chr1 130054639 130055168 -67140264 - L1Md_F2 LINE L1 -15 6567 6044 1 1577 1366 57 22 6 chr1 130055547 130055725 -67139707 - B2_Mm2 SINE B2 -14 181 1 1 1577 1536 204 121 27 chr1 130055829 130056233 -67139199 - RMER10A LTR ERVL 0 442 1 1 1577 489 326 53 26 chr1 130057114 130057341 -67138091 - MLT1E3 LTR MaLR -332 292 60 1 1577 585 0 0 0 chr1 130057879 130057944 -67137488 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1577 256 222 0 47 chr1 130058939 130059072 -67136360 + T-rich Low_complexity Low_complexity 1 126 0 1 1577 583 265 29 0 chr1 130060239 130060375 -67135057 + B1_Mur1 SINE Alu 6 145 -4 1 1577 1065 232 10 19 chr1 130060915 130061122 -67134310 + B3 SINE B2 8 212 -4 1 1577 903 155 0 0 chr1 130061183 130061325 -67134107 - B1_Mus1 SINE Alu -6 142 1 1 1577 189 74 0 0 chr1 130061635 130061662 -67133770 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1577 860 258 28 5 chr1 130063391 130063605 -67131827 + ID_B1 SINE B4 3 221 -3 1 1577 1156 128 11 22 chr1 130063729 130063912 -67131520 + B2_Mm2 SINE B2 1 181 -14 1 1577 655 226 29 0 chr1 130064010 130064147 -67131285 - B1_Mur1 SINE Alu -8 141 1 1 1577 507 197 24 57 chr1 130064195 130064319 -67131113 - PB1D9 SINE Alu 0 120 1 1 1577 22 80 0 0 chr1 130064589 130064639 -67130793 + AT_rich Low_complexity Low_complexity 1 50 0 1 1577 412 174 11 0 chr1 130066467 130066559 -67128873 + Lx9 LINE L1 7547 7639 -5 1 1577 792 238 10 20 chr1 130066848 130067045 -67128387 + B3A SINE B2 1 195 -3 1 1577 275 300 17 0 chr1 130067069 130067129 -67128303 - RSINE1 SINE B4 -99 66 6 1 1577 216 269 209 0 chr1 130067149 130067216 -67128216 - ID4_ SINE ID -1 82 2 1 1577 293 226 65 30 chr1 130067430 130067599 -67127833 - RMER17C LTR ERVK -139 271 97 1 1577 243 0 0 0 chr1 130068203 130068230 -67127202 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1577 520 225 72 0 chr1 130068646 130068757 -67126675 + B3 SINE B2 92 210 -6 1 1577 1921 92 85 3 chr1 130068765 130069070 -67126362 - L1_Mus3 LINE L1 -4 6634 6305 1 1577 183 331 105 24 chr1 130069427 130069551 -67125881 - L2 LINE L2 -484 2935 2802 1 1577 284 303 63 18 chr1 130069697 130069808 -67125624 + PB1D10 SINE Alu 2 117 0 1 1577 500 256 13 74 chr1 130069812 130069968 -67125464 + ID_B1 SINE B4 82 224 0 1 1577 548 311 46 93 chr1 130070000 130070259 -67125173 + B4A SINE B4 5 251 -41 1 1577 471 63 0 0 chr1 130070272 130070335 -67125097 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1577 218 119 48 0 chr1 130070335 130070377 -67125055 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1 1577 234 43 85 0 chr1 130070791 130070838 -67124594 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1577 346 241 12 12 chr1 130072355 130072435 -67122997 + ID4 SINE ID 4 83 0 1 1577 697 237 14 7 chr1 130073992 130074132 -67121300 + B1_Mur1 SINE Alu 9 149 0 1 1577 468 225 6 98 chr1 130074251 130074414 -67121018 + B1_Mur1 SINE Alu 2 149 0 1 1577 243 318 97 70 chr1 130075089 130075275 -67120157 - MIRc SINE MIR -46 222 32 1 1577 346 349 52 66 chr1 130076446 130076658 -67118774 - MIRb SINE MIR -18 250 42 1 1577 229 394 49 42 chr1 130077236 130077379 -67118053 - L2 LINE L2 -601 2818 2675 1 1577 465 325 7 0 chr1 130077536 130077687 -67117745 - RSINE1 SINE B4 -12 153 2 1 1577 401 19 38 0 chr1 130077921 130077974 -67117458 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1577 1095 73 0 0 chr1 130077975 130078112 -67117320 - B1_Mus2 SINE Alu -10 137 1 1 1577 289 250 0 35 chr1 130079727 130079785 -67115647 - B1_Mm SINE Alu -90 57 2 1 1577 207 211 0 0 chr1 130079847 130079885 -67115547 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1 1577 225 193 121 17 chr1 130080010 130080068 -67115364 + PB1D9 SINE Alu 52 115 -5 1 1577 682 186 38 15 chr1 130081663 130081794 -67113638 - B1_Mm SINE Alu -13 134 1 1 1577 630 39 0 0 chr1 130081831 130081908 -67113524 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 1 1577 438 209 23 11 chr1 130082071 130082158 -67113274 + B3 SINE B2 2 89 -127 1 1577 205 190 0 49 chr1 130082351 130082412 -67113020 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 1 1577 647 115 133 37 chr1 130082414 130082549 -67112883 - B1_Mus1 SINE Alu 0 148 1 1 1577 789 244 13 70 chr1 130082809 130083038 -67112394 - B3 SINE B2 0 216 1 1 1577 248 255 165 77 chr1 130083081 130083251 -67112181 - MER46C DNA MER2_type -121 217 33 1 1577 182 121 61 0 chr1 130083713 130083746 -67111686 - MIRb SINE MIR -101 167 133 1 1577 766 288 0 0 chr1 130083928 130084088 -67111344 - RSINE1 SINE B4 -4 161 2 1 1577 561 211 120 0 chr1 130084111 130084244 -67111188 - B1_Mur1 SINE Alu 0 149 1 1 1577 189 198 28 28 chr1 130086291 130086400 -67109032 + (TATATG)n Simple_repeat Simple_repeat 5 113 0 1 1577 850 235 39 20 chr1 130086432 130086477 -67108955 - B3 SINE B2 -6 210 164 1 1577 726 44 0 0 chr1 130086477 130086567 -67108865 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1577 850 235 39 20 chr1 130086567 130086725 -67108707 - B3 SINE B2 -53 163 3 1 1577 1758 218 12 52 chr1 130087655 130087979 -67107453 - MTD LTR MaLR -29 390 76 1 1577 1169 92 109 0 chr1 130087979 130087995 -67107437 - B2_Mm2 SINE B2 -2 193 165 1 1577 342 45 0 0 chr1 130087995 130088039 -67107393 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 1 1577 1169 92 109 0 chr1 130088039 130088196 -67107236 - B2_Mm2 SINE B2 -31 164 2 1 1577 1758 218 12 52 chr1 130088196 130088277 -67107155 - MTD LTR MaLR -344 75 1 1 1577 668 203 16 8 chr1 130088730 130088859 -67106573 + B3 SINE B2 1 130 -86 1 1577 200 215 15 30 chr1 130089641 130089708 -67105724 + A-rich Low_complexity Low_complexity 5 70 0 1 1577 744 271 34 29 chr1 130089728 130089933 -67105499 + ID_B1 SINE B4 2 207 -17 1 1577 230 229 0 0 chr1 130090172 130090233 -67105199 + (CCA)n Simple_repeat Simple_repeat 2 62 0 1 1577 2212 162 36 41 chr1 130090560 130090977 -67104455 - MTC LTR MaLR 0 421 7 1 1577 578 281 22 7 chr1 130091175 130091311 -67104121 - B1_Mus2 SINE Alu -9 138 1 1 1577 250 227 50 193 chr1 130091479 130091681 -67103751 + RMER15 LTR ERVL 4 176 -399 1 1577 305 257 16 66 chr1 130091790 130091911 -67103521 + RMER15 LTR ERVL 446 560 -15 1 1577 584 236 79 0 chr1 130092294 130092421 -67103011 + B1_Mur1 SINE Alu 7 143 -6 1 1577 1264 270 129 46 chr1 130092460 130093093 -67102339 - Lx9 LINE L1 -485 7159 6474 1 1577 825 194 0 7 chr1 130093226 130093371 -67102061 - B1_Mur1 SINE Alu -1 148 5 1 1577 315 0 0 0 chr1 130093785 130093820 -67101612 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1577 369 0 0 0 chr1 130093820 130093860 -67101572 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1577 360 97 0 0 chr1 130094188 130094250 -67101182 + (T)n Simple_repeat Simple_repeat 1 62 0 1 1577 670 162 100 29 chr1 130094252 130094392 -67101040 - B1_Mur4 SINE Alu 0 150 1 1 1577 901 314 47 4 chr1 130094584 130094859 -67100573 + B4 SINE B4 2 288 -4 1 1577 387 315 33 47 chr1 130095526 130095676 -67099756 + RSINE1 SINE B4 5 152 -13 1 1577 235 316 25 58 chr1 130095806 130095927 -67099505 + PB1D10 SINE Alu 1 117 0 1 1577 844 161 130 22 chr1 130096188 130096372 -67099060 + B3 SINE B2 5 208 -8 1 1577 1006 116 69 11 chr1 130096415 130096589 -67098843 + B2_Mm2 SINE B2 1 184 -11 1 1577 29 0 0 0 chr1 130096828 130096857 -67098575 + AT_rich Low_complexity Low_complexity 1 29 0 1 1577 912 208 43 19 chr1 130098217 130098428 -67097004 - B3 SINE B2 0 216 1 1 1577 283 261 116 0 chr1 130099608 130099677 -67095755 + ID SINE ID 4 80 -144 1 1577 402 217 202 32 chr1 130102447 130102571 -67092861 + B1_Mur1 SINE Alu 2 146 -3 1 1577 27 0 0 0 chr1 130102571 130102598 -67092834 + AT_rich Low_complexity Low_complexity 1 27 0 1 1577 451 272 48 12 chr1 130102756 130102952 -67092480 + MIR SINE MIR 37 236 -26 1 1577 494 295 35 14 chr1 130103211 130103352 -67092080 - B1F2 SINE Alu 0 149 6 1 1577 893 239 66 0 chr1 130103382 130103579 -67091853 + B3 SINE B2 1 210 -6 1 1577 37 39 0 0 chr1 130103599 130103650 -67091782 + AT_rich Low_complexity Low_complexity 1 51 0 2 1577 321 250 130 43 chr1 130104761 130104899 -67090533 + MTE2a LTR MaLR 172 321 -58 2 1577 1586 42 5 0 chr1 130105449 130105641 -67089791 - B2_Mm1t SINE B2 0 193 1 2 1577 1146 126 5 32 chr1 130105889 130106078 -67089354 - B2_Mm2 SINE B2 -9 186 3 2 1577 24 0 0 0 chr1 130107578 130107602 -67087830 + AT_rich Low_complexity Low_complexity 1 24 0 2 1577 357 288 56 11 chr1 130107995 130108103 -67087329 + B1F SINE Alu 12 125 -24 2 1577 240 319 30 46 chr1 130108148 130108270 -67087162 - B1F1 SINE Alu -1 148 1 2 1577 787 207 0 14 chr1 130108641 130108788 -67086644 + B1_Mur2 SINE Alu 5 149 0 2 1577 691 221 13 27 chr1 130108802 130108951 -67086481 + B1_Mur1 SINE Alu 2 148 -1 2 1577 448 168 39 4 chr1 130109080 130109188 -67086244 - MTD LTR MaLR 0 421 311 2 1577 501 234 147 14 chr1 130109253 130109396 -67086036 - MTD LTR MaLR -257 162 1 2 1577 458 196 43 21 chr1 130109627 130109721 -67085711 + B1_Mur1 SINE Alu 46 141 -8 2 1577 450 0 0 0 chr1 130110098 130110148 -67085284 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2 1577 885 107 42 14 chr1 130110278 130110420 -67085012 - B1_Mur4 SINE Alu -2 148 3 2 1577 240 35 0 0 chr1 130110740 130110769 -67084663 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1577 1141 70 0 0 chr1 130110769 130110912 -67084520 - B1_Mus2 SINE Alu 0 147 5 2 1577 432 0 0 0 chr1 130110944 130110992 -67084440 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1577 691 293 89 30 chr1 130111086 130111357 -67084075 + B4A SINE B4 4 290 -2 2 1577 436 267 0 0 chr1 130111776 130111866 -67083566 + B1F2 SINE Alu 2 91 -58 2 1577 1182 95 7 0 chr1 130111882 130112029 -67083403 - B1_Mus1 SINE Alu 0 148 1 2 1577 184 173 211 0 chr1 130112161 130112213 -67083219 + MIRb SINE MIR 188 250 -18 2 1577 230 299 38 60 chr1 130112453 130112647 -67082785 - MIR SINE MIR -45 223 25 2 1577 833 217 83 29 chr1 130113290 130113494 -67081938 - B3 SINE B2 -1 215 1 2 1577 3875 43 53 2 chr1 130113605 130114074 -67081358 + L1Md_F2 LINE L1 6090 6582 0 2 1577 323 262 388 56 chr1 130114082 130114215 -67081217 + B3A SINE B2 6 182 -16 2 1577 385 191 60 0 chr1 130114215 130114299 -67081133 - B1_Mus1 SINE Alu -45 103 15 2 1577 266 229 117 68 chr1 130114299 130114318 -67081114 - MT2B LTR ERVL -344 257 150 2 1577 761 250 78 68 chr1 130115090 130115277 -67080155 + B3 SINE B2 4 188 -28 2 1577 1296 98 75 0 chr1 130115277 130115451 -67079981 - B2_Mm2 SINE B2 -7 188 2 2 1577 761 245 81 67 chr1 130115451 130115486 -67079946 + B3 SINE B2 189 216 0 2 1577 367 266 9 68 chr1 130115578 130115711 -67079721 + PB1D9 SINE Alu 7 136 -13 2 1577 807 89 187 0 chr1 130115740 130115863 -67079569 - B1_Mus1 SINE Alu -2 146 1 2 1577 207 88 0 0 chr1 130115885 130115919 -67079513 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1577 21 0 0 0 chr1 130116010 130116031 -67079401 + AT_rich Low_complexity Low_complexity 1 21 0 2 1577 204 200 0 0 chr1 130116340 130116385 -67079047 + GA-rich Low_complexity Low_complexity 2 46 0 2 1577 870 212 64 29 chr1 130116759 130116963 -67078469 - B3 SINE B2 -1 215 5 2 1577 189 0 0 0 chr1 130117624 130117645 -67077787 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1577 814 144 83 0 chr1 130117667 130117799 -67077633 - B1_Mus1 SINE Alu -5 143 1 2 1577 21 57 0 0 chr1 130117866 130117901 -67077531 + AT_rich Low_complexity Low_complexity 1 35 0 2 1577 1150 62 7 7 chr1 130118925 130119070 -67076362 + B1_Mm SINE Alu 2 146 -1 2 1577 653 278 20 20 chr1 130119114 130119309 -67076123 + B3 SINE B2 22 216 0 2 1577 390 204 73 8 chr1 130119383 130119491 -67075941 - B1_Mur2 SINE Alu -24 124 2 2 1577 222 151 52 52 chr1 130119637 130119714 -67075718 + T-rich Low_complexity Low_complexity 4 80 0 2 1577 299 327 25 68 chr1 130119726 130119844 -67075588 - PB1D10 SINE Alu 0 117 5 2 1577 228 212 45 0 chr1 130120242 130120302 -67075130 - B1F1 SINE Alu -1 148 84 2 1577 377 261 57 0 chr1 130120483 130120583 -67074849 - PB1D10 SINE Alu -7 120 6 2 1577 250 330 11 11 chr1 130120501 130120593 -67074839 - ID_B1 SINE B4 -55 169 78 2 1577 1414 105 16 0 chr1 130120601 130120792 -67074640 - B2_Mm2 SINE B2 0 195 2 2 1577 1723 202 62 8 chr1 130120943 130121298 -67074134 - ORR1D1 LTR MaLR 0 374 1 2 1577 432 270 27 81 chr1 130121298 130121447 -67073985 + ID_B1 SINE B4 84 224 0 2 1577 1112 43 0 0 chr1 130121661 130121800 -67073632 + B1_Mus1 SINE Alu 10 148 0 2 1577 288 288 14 132 chr1 130121806 130121950 -67073482 + MT2B LTR ERVL 152 278 -323 2 1577 617 178 28 79 chr1 130121823 130121978 -67073454 + B1_Mur1 SINE Alu 1 149 0 2 1577 216 116 0 0 chr1 130121982 130122001 -67073431 + (A)n Simple_repeat Simple_repeat 1 19 0 2 1577 1396 35 102 11 chr1 130122001 130122177 -67073255 + B2_Mm1a SINE B2 2 193 0 2 1577 216 116 0 0 chr1 130122177 130122200 -67073232 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1577 541 219 425 0 chr1 130122340 130122486 -67072946 - B3 SINE B2 -6 210 3 2 1577 1302 34 0 13 chr1 130122539 130122688 -67072744 + B1_Mus1 SINE Alu 1 147 -1 2 1577 327 25 0 0 chr1 130122723 130122763 -67072669 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1577 267 115 71 71 chr1 130122771 130122827 -67072605 - B2_Mm2 SINE B2 -94 101 46 2 1577 1474 62 11 0 chr1 130122876 130123054 -67072378 - B2_Mm1t SINE B2 -13 180 1 2 1577 1226 68 0 7 chr1 130123110 130123258 -67072174 - B1_Mus2 SINE Alu 0 147 1 2 1577 1540 174 95 7 chr1 130123273 130123579 -67071853 - RMER1B Other Other -2 1064 732 2 1577 309 273 12 49 chr1 130123697 130123778 -67071654 - B3 SINE B2 -137 79 2 2 1577 1983 226 144 69 chr1 130123828 130124588 -67070844 - L1_Mur3 LINE L1 -2901 2979 2133 2 1577 812 181 58 0 chr1 130124588 130124726 -67070706 + B1_Mur4 SINE Alu 5 150 0 2 1577 1983 226 144 69 chr1 130124726 130124816 -67070616 - L1_Mur3 LINE L1 -3748 2132 2065 2 1577 690 229 84 10 chr1 130124815 130125148 -67070284 - Lx4B LINE L1 0 7058 6628 2 1577 279 261 49 31 chr1 130125151 130125284 -67070148 - L1_Mur3 LINE L1 -3847 2033 1897 2 1577 419 250 131 66 chr1 130125285 130125422 -67070010 - B1F2 SINE Alu -1 148 3 2 1577 556 262 14 136 chr1 130125431 130125507 -67069925 - B2_Mm2 SINE B2 0 195 135 2 1577 459 52 0 0 chr1 130125507 130125565 -67069867 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1577 719 262 14 136 chr1 130125565 130125709 -67069723 - B3 SINE B2 -71 145 2 2 1577 986 177 29 0 chr1 130125740 130125915 -67069517 + B2_Mm2 SINE B2 6 185 -10 2 1577 272 125 16 0 chr1 130126013 130126077 -67069355 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1577 278 246 18 0 chr1 130126079 130126136 -67069296 - ID4_ SINE ID -17 66 9 2 1577 403 273 0 0 chr1 130126378 130126455 -67068977 + PB1D10 SINE Alu 9 85 -32 2 1577 225 287 46 0 chr1 130126668 130126755 -67068677 + L1MC4 LINE L1 7691 7781 -261 2 1577 1033 228 15 10 chr1 130126756 130126960 -67068472 + B3 SINE B2 12 216 0 2 1577 580 237 57 7 chr1 130127399 130127539 -67067893 + B1F2 SINE Alu 3 149 0 2 1577 367 229 211 0 chr1 130128143 130128252 -67067180 - RSINE1 SINE B4 -4 161 30 2 1577 565 208 131 0 chr1 130128269 130128399 -67067033 + B2_Mm2 SINE B2 49 195 0 2 1577 498 280 159 22 chr1 130128399 130128669 -67066763 + L1M5 LINE L1 5428 5734 -430 2 1577 186 143 0 0 chr1 130129044 130129072 -67066360 + L4 LINE RTE 112 139 -1890 2 1577 22 35 0 0 chr1 130129265 130129294 -67066138 + AT_rich Low_complexity Low_complexity 1 29 0 2 1577 1087 195 54 0 chr1 130129294 130129499 -67065933 - B3 SINE B2 0 216 1 2 1577 596 221 284 12 chr1 130129544 130129713 -67065719 - B3 SINE B2 0 216 2 2 1577 302 115 19 0 chr1 130129744 130129796 -67065636 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 2 1577 913 197 7 0 chr1 130129806 130129953 -67065479 - B1_Mus1 SINE Alu 0 148 1 2 1577 514 301 39 39 chr1 130129991 130130171 -67065261 + B3A SINE B2 3 182 -16 2 1577 24 0 0 0 chr1 130130176 130130200 -67065232 + AT_rich Low_complexity Low_complexity 1 24 0 2 1577 649 297 0 55 chr1 130130212 130130376 -67065056 + RSINE1 SINE B4 3 157 -8 2 1577 719 266 37 21 chr1 130130425 130130613 -67064819 + B3A SINE B2 1 191 -7 2 1577 307 243 143 39 chr1 130130624 130130636 -67064796 + B1_Mur2 SINE Alu 9 18 -131 2 1577 3414 24 39 3 chr1 130130636 130131018 -67064414 - MTA_Mm LTR MaLR 0 396 1 2 1577 307 243 143 39 chr1 130131018 130131082 -67064350 + B1_Mur2 SINE Alu 19 93 -56 2 1577 243 0 0 0 chr1 130131221 130131248 -67064184 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2 1577 537 195 0 0 chr1 130131248 130131335 -67064097 + B1_Mur4 SINE Alu 3 89 -61 2 1577 629 263 13 26 chr1 130131337 130131493 -67063939 + RSINE1 SINE B4 8 161 -4 2 1577 1484 99 10 0 chr1 130132632 130132824 -67062608 + B2_Mm2 SINE B2 2 195 0 2 1577 730 174 26 53 chr1 130134977 130135129 -67060303 - B1_Mus1 SINE Alu 0 148 1 2 1577 875 103 6 110 chr1 130135266 130135429 -67060003 + B1_Mm SINE Alu 1 146 -1 2 1577 268 241 0 17 chr1 130135617 130135676 -67059756 + ID_B1 SINE B4 81 138 -86 2 1577 247 258 13 132 chr1 130135673 130135749 -67059683 + RSINE1 SINE B4 58 124 -41 2 1577 309 109 0 0 chr1 130135754 130135800 -67059632 + (CACG)n Simple_repeat Simple_repeat 1 46 0 2 1577 839 238 113 0 chr1 130135809 130135994 -67059438 + ID_B1 SINE B4 3 208 -16 2 1577 228 194 219 14 chr1 130136227 130136300 -67059132 + PB1D10 SINE Alu 30 117 0 3 1577 23 0 0 0 chr1 130136472 130136495 -67058937 + AT_rich Low_complexity Low_complexity 1 23 0 3 1577 287 277 35 35 chr1 130136551 130136637 -67058795 + ID_B1 SINE B4 77 162 -62 3 1577 1481 55 50 6 chr1 130136932 130137113 -67058319 - B2_Mm2 SINE B2 -5 190 2 3 1577 24 0 0 0 chr1 130137267 130137291 -67058141 + AT_rich Low_complexity Low_complexity 1 24 0 3 1577 3722 20 2 0 chr1 130137344 130137739 -67057693 - MTA_Mm LTR MaLR 0 396 1 3 1577 325 279 46 46 chr1 130137780 130137889 -67057543 + PB1D10 SINE Alu 3 111 -6 3 1577 434 245 62 26 chr1 130137910 130138023 -67057409 + B3A SINE B2 2 118 -80 3 1577 466 266 26 44 chr1 130138068 130138182 -67057250 - B3A SINE B2 -30 168 57 3 1577 655 239 105 23 chr1 130138253 130138424 -67057008 - B3A SINE B2 -13 185 1 3 1577 1159 54 0 0 chr1 130138465 130138612 -67056820 + L1Md_F2 LINE L1 6436 6582 0 3 1577 1165 95 0 7 chr1 130138628 130138776 -67056656 + B1_Mus1 SINE Alu 2 148 0 3 1577 1375 146 198 12 chr1 130139412 130139599 -67055833 - RMER10B LTR ERVL -20 378 142 3 1577 360 0 0 0 chr1 130139599 130139639 -67055793 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1577 1375 146 198 12 chr1 130139639 130139770 -67055662 - RMER10B LTR ERVL -257 141 3 3 1577 234 0 0 0 chr1 130140261 130140287 -67055145 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1577 454 221 40 32 chr1 130140290 130140416 -67055016 - B1_Mm SINE Alu -16 131 5 3 1577 234 0 0 0 chr1 130141308 130141334 -67054098 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1577 25 31 0 0 chr1 130142338 130142370 -67053062 + AT_rich Low_complexity Low_complexity 1 32 0 3 1577 435 164 45 0 chr1 130142431 130142498 -67052934 - B3 SINE B2 -144 72 3 3 1577 207 0 0 0 chr1 130142691 130142714 -67052718 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1577 467 172 118 0 chr1 130142714 130142807 -67052625 - PB1D10 SINE Alu -2 115 12 3 1577 224 203 11 169 chr1 130142761 130142850 -67052582 - B4 SINE B4 -151 141 67 3 1577 470 198 22 65 chr1 130142858 130142950 -67052482 - PB1D9 SINE Alu -15 105 18 3 1577 362 286 0 11 chr1 130142951 130143052 -67052380 - B1_Mur4 SINE Alu -17 103 4 3 1577 400 158 312 52 chr1 130143072 130143226 -67052206 - B2_Mm2 SINE B2 0 195 2 3 1577 1226 131 17 0 chr1 130143226 130143402 -67052030 - B2_Mm1t SINE B2 -14 179 1 3 1577 228 35 0 0 chr1 130143430 130143459 -67051973 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1577 913 59 2 47 chr1 130143483 130143626 -67051806 - B1_Mus2 SINE Alu -9 141 3 3 1577 703 155 17 0 chr1 130143626 130143724 -67051708 + B1_Mus2 SINE Alu 42 141 -6 3 1577 246 270 63 94 chr1 130143610 130143737 -67051695 + B4 SINE B4 111 233 -59 3 1577 610 192 45 0 chr1 130143738 130143862 -67051570 + B1_Mur4 SINE Alu 7 144 -6 3 1577 242 333 0 0 chr1 130144178 130144259 -67051173 + L1MC4 LINE L1 6653 6733 -1309 3 1577 256 278 27 14 chr1 130144488 130144561 -67050871 + RMER30 DNA MER1_type 11 84 -118 3 1577 1287 41 7 0 chr1 130144788 130144933 -67050499 + B1_Mus2 SINE Alu 2 147 0 3 1577 390 21 0 0 chr1 130145046 130145093 -67050339 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1577 555 284 69 25 chr1 130145101 130145260 -67050172 + B3A SINE B2 1 166 -32 3 1577 228 86 0 0 chr1 130145262 130145297 -67050135 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1577 1505 66 66 0 chr1 130145364 130145546 -67049886 - B2_Mm2 SINE B2 -1 194 1 3 1577 302 200 227 21 chr1 130145568 130145665 -67049767 - PB1 SINE Alu -7 120 4 3 1577 23 0 0 0 chr1 130145712 130145735 -67049697 + AT_rich Low_complexity Low_complexity 1 23 0 3 1577 1125 158 49 0 chr1 130145872 130146055 -67049377 + B2_Mm2 SINE B2 2 193 -2 3 1577 491 195 221 0 chr1 130146699 130146812 -67048620 + B1_Mus1 SINE Alu 10 147 -1 3 1577 204 125 0 0 chr1 130146812 130146844 -67048588 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 3 1577 314 242 0 59 chr1 130147540 130147641 -67047791 - L2a LINE L2 -83 3343 3249 3 1577 339 245 49 29 chr1 130147740 130147875 -67047557 + B3A SINE B2 1 143 -52 3 1577 717 197 93 27 chr1 130147854 130148047 -67047385 + B3A SINE B2 5 197 -1 3 1577 208 357 103 0 chr1 130148053 130148179 -67047253 - L2 LINE L2 -665 2754 2616 3 1577 597 172 171 8 chr1 130148328 130148445 -67046987 + B1_Mus1 SINE Alu 1 136 -12 3 1577 728 203 55 22 chr1 130148477 130148658 -67046774 + B3 SINE B2 27 213 -3 3 1577 3202 43 5 101 chr1 130149009 130149447 -67045985 - MTA_Mm LTR MaLR 0 396 1 3 1577 760 62 0 0 chr1 130149447 130149544 -67045888 + B1_Mm SINE Alu 1 97 -50 3 1577 463 351 65 7 chr1 130149670 130149825 -67045607 + RSINE1 SINE B4 2 165 0 3 1577 891 215 7 0 chr1 130149839 130149988 -67045444 + B1_Mur4 SINE Alu 1 150 0 3 1577 224 227 0 0 chr1 130150023 130150067 -67045365 + B3 SINE B2 3 46 -170 3 1577 1569 70 0 5 chr1 130150296 130150484 -67044948 + B2_Mm1t SINE B2 1 187 -6 3 1577 1243 165 39 24 chr1 130150828 130151033 -67044399 - B3 SINE B2 -6 210 3 3 1577 408 111 0 0 chr1 130151092 130151155 -67044277 + (TTTTC)n Simple_repeat Simple_repeat 3 65 0 3 1577 416 235 179 4 chr1 130151155 130151279 -67044153 - B1_Mur2 SINE Alu 0 149 9 3 1577 30 27 0 0 chr1 130151302 130151339 -67044093 + AT_rich Low_complexity Low_complexity 1 37 0 3 1577 344 122 8 34 chr1 130151342 130151408 -67044024 - B2_Mm2 SINE B2 -102 114 47 3 1577 1101 155 17 0 chr1 130151451 130151625 -67043807 - B2_Mm1t SINE B2 -14 179 3 3 1577 1257 57 0 0 chr1 130151753 130151894 -67043538 + B1_Mus2 SINE Alu 1 141 -6 3 1577 207 0 0 0 chr1 130152078 130152101 -67043331 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 1577 759 193 57 0 chr1 130152126 130152266 -67043166 + B1_Mus1 SINE Alu 1 148 0 3 1577 1334 112 32 0 chr1 130152857 130153044 -67042388 + B2_Mm1a SINE B2 1 193 0 3 1577 443 178 202 63 chr1 130153145 130153411 -67042021 - RMER12 LTR ERVK -260 1062 711 3 1577 1246 56 0 0 chr1 130153430 130153572 -67041860 - B1_Mus2 SINE Alu -5 142 1 3 1577 2700 145 32 14 chr1 130153614 130154110 -67041322 - RMER12 LTR ERVK -817 505 1 3 1578 243 0 0 0 chr1 130154548 130154575 -67040857 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1578 1194 58 0 0 chr1 130154579 130154716 -67040716 - B1_Mus2 SINE Alu -7 140 4 3 1578 670 141 149 0 chr1 130155058 130155179 -67040253 - B1_Mur2 SINE Alu -1 148 10 3 1578 237 65 0 0 chr1 130155269 130155300 -67040132 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1578 360 0 0 0 chr1 130155300 130155339 -67040093 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1578 231 103 0 0 chr1 130155865 130155904 -67039528 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 1578 402 187 53 0 chr1 130155911 130155986 -67039446 - B1_Mus2 SINE Alu -22 125 47 3 1578 254 243 93 13 chr1 130156691 130156766 -67038666 + ID4_ SINE ID 1 81 -2 3 1578 277 348 0 89 chr1 130156826 130156854 -67038578 - B3 SINE B2 -101 115 88 3 1578 633 123 349 0 chr1 130156854 130156960 -67038472 + B1_Mur4 SINE Alu 1 143 -7 3 1578 277 348 0 89 chr1 130156960 130157054 -67038378 - B3 SINE B2 -129 87 4 3 1578 236 239 0 69 chr1 130157639 130157711 -67037721 - B1F SINE Alu 0 149 61 3 1578 1602 47 11 5 chr1 130157754 130157945 -67037487 - B2_Mm2 SINE B2 -2 193 2 3 1578 842 256 28 69 chr1 130158365 130158583 -67036849 - B3 SINE B2 -7 209 1 3 1578 594 39 0 0 chr1 130158599 130158676 -67036756 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1578 985 169 29 73 chr1 130158799 130159003 -67036429 - B2_Mm2 SINE B2 0 195 1 3 1578 192 40 0 0 chr1 130159007 130159032 -67036400 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1578 1687 37 21 0 chr1 130159032 130159221 -67036211 - B2_Mm1t SINE B2 0 193 1 3 1578 269 169 329 27 chr1 130159923 130159996 -67035436 + B1_Mus2 SINE Alu 2 96 -52 3 1578 943 49 8 8 chr1 130160014 130160137 -67035295 + B1_Mur4 SINE Alu 27 149 -1 3 1578 674 280 51 31 chr1 130160189 130160384 -67035048 - B3 SINE B2 -17 199 1 3 1578 383 295 24 32 chr1 130160393 130160519 -67034913 - RSINE1 SINE B4 -38 127 3 3 1578 423 0 0 0 chr1 130160551 130160598 -67034834 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1578 630 244 46 0 chr1 130160664 130160795 -67034637 - B3A SINE B2 -54 144 8 3 1578 344 196 282 10 chr1 130160815 130160918 -67034514 - B1_Mm SINE Alu -1 146 16 3 1578 601 165 93 43 chr1 130160933 130161072 -67034360 + B1_Mur4 SINE Alu 5 150 0 3 1578 259 232 36 100 chr1 130161103 130161119 -67034313 + MT2B2 LTR ERVL 151 159 -425 3 1578 510 273 58 0 chr1 130161119 130161240 -67034192 + B1_Mur1 SINE Alu 1 128 -21 3 1578 297 0 0 0 chr1 130161392 130161425 -67034007 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1578 319 156 0 37 chr1 130161439 130161505 -67033927 - B2_Mm2 SINE B2 -107 109 48 3 1578 1416 99 5 16 chr1 130161565 130161759 -67033673 - B2_Mm2 SINE B2 -2 193 2 3 1578 1338 108 11 0 chr1 130161767 130161943 -67033489 - B2_Mm1t SINE B2 -14 179 2 3 1578 936 216 59 25 chr1 130161946 130162150 -67033282 - B3 SINE B2 0 216 6 3 1578 1503 80 16 0 chr1 130162179 130162367 -67033065 + B2_Mm2 SINE B2 1 191 -4 3 1578 209 280 20 0 chr1 130162408 130162458 -67032974 - L2b LINE L2 -4 3371 3321 4 1578 1299 34 0 20 chr1 130162574 130162725 -67032707 + B1_Mus1 SINE Alu 1 148 0 4 1578 777 226 0 0 chr1 130163060 130163206 -67032226 - B1_Mur1 SINE Alu -1 148 3 4 1578 601 176 183 8 chr1 130163283 130163403 -67032029 + B1_Mur2 SINE Alu 3 143 -6 4 1578 797 231 5 97 chr1 130163434 130163483 -67031949 + B3A SINE B2 3 51 -147 4 1578 2971 16 0 3 chr1 130163483 130163806 -67031626 - RLTRETN_Mm LTR ERVK 0 322 1 4 1578 797 231 5 97 chr1 130163806 130163972 -67031460 + B3A SINE B2 52 198 0 4 1578 369 310 199 36 chr1 130164144 130164395 -67031037 + B4A SINE B4 1 292 0 4 1578 439 292 63 35 chr1 130164469 130164611 -67030821 - B3A SINE B2 -51 147 2 4 1578 248 281 47 73 chr1 130164647 130164717 -67030715 + L1MB8 LINE L1 5212 5276 -870 4 1578 1174 82 0 7 chr1 130164717 130164864 -67030568 + B1_Mus2 SINE Alu 2 147 0 4 1578 248 281 47 73 chr1 130164864 130164943 -67030489 + L1MB8 LINE L1 5277 5357 -789 4 1578 210 71 0 0 chr1 130165006 130165034 -67030398 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1578 1157 90 0 0 chr1 130165037 130165182 -67030250 - B1_Mus2 SINE Alu 0 147 3 4 1578 342 317 48 0 chr1 130165185 130165289 -67030143 + B1F SINE Alu 40 148 -1 4 1578 811 152 72 0 chr1 130165383 130165521 -67029911 - B1_Mur4 SINE Alu 0 150 3 4 1578 374 282 182 14 chr1 130165550 130165759 -67029673 + L1MB8 LINE L1 5848 6091 -87 4 1578 498 33 0 0 chr1 130165761 130165821 -67029611 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1578 390 255 44 97 chr1 130165993 130166106 -67029326 - PB1D10 SINE Alu -21 128 22 4 1578 192 152 0 0 chr1 130166175 130166208 -67029224 + GA-rich Low_complexity Low_complexity 4 36 0 4 1578 436 238 106 15 chr1 130166229 130166361 -67029071 - RSINE1 SINE B4 -19 146 3 4 1578 274 243 14 41 chr1 130167295 130167368 -67028064 + RSINE1 SINE B4 6 76 -89 4 1578 456 282 75 75 chr1 130167709 130167775 -67027657 - RSINE1 SINE B4 -2 163 87 4 1578 239 0 0 31 chr1 130167781 130167813 -67027619 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1578 1217 28 0 7 chr1 130167813 130167949 -67027483 - B1_Mus1 SINE Alu -11 137 2 4 1578 456 282 75 75 chr1 130167949 130168043 -67027389 - RSINE1 SINE B4 -79 86 3 4 1578 269 266 135 13 chr1 130168346 130168502 -67026930 - L1M1 LINE L1 -416 5884 5710 4 1578 382 264 82 36 chr1 130168573 130168683 -67026749 + B1_Mur3 SINE Alu 1 115 -5 4 1578 1527 58 11 0 chr1 130168958 130169147 -67026285 + B2_Mm2 SINE B2 2 192 -3 4 1578 22 94 0 0 chr1 130169251 130169315 -67026117 + AT_rich Low_complexity Low_complexity 1 64 0 4 1578 616 208 76 15 chr1 130169876 130170008 -67025424 - B1_Mur2 SINE Alu -7 142 3 4 1578 977 152 72 11 chr1 130170192 130170372 -67025060 - B2_Mm2 SINE B2 -4 191 1 4 1578 826 236 58 15 chr1 130170404 130170610 -67024822 + B3 SINE B2 2 216 0 4 1578 630 199 222 78 chr1 130170645 130170686 -67024746 + B3 SINE B2 1 40 -176 4 1578 1282 115 16 0 chr1 130170686 130170877 -67024555 + B2_Mm2 SINE B2 2 195 0 4 1578 630 199 222 78 chr1 130170877 130171015 -67024417 + B3 SINE B2 41 206 -10 4 1578 805 177 6 64 chr1 130171037 130171194 -67024238 + B1_Mur2 SINE Alu 1 148 -1 4 1578 579 217 26 9 chr1 130171760 130171876 -67023556 - PB1D9 SINE Alu 0 120 3 4 1578 272 320 71 10 chr1 130171795 130171893 -67023539 - B4A SINE B4 -123 169 66 4 1578 256 306 14 101 chr1 130171857 130171995 -67023437 + B1F SINE Alu 22 147 -2 4 1578 286 302 90 34 chr1 130172248 130172337 -67023095 - ID_B1 SINE B4 -66 158 65 4 1578 1900 155 78 21 chr1 130172447 130172782 -67022650 - ORR1B1 LTR MaLR -8 386 33 4 1578 447 176 165 10 chr1 130175112 130175215 -67020217 + B1F2 SINE Alu 2 120 -29 4 1578 390 266 117 0 chr1 130175292 130175420 -67020012 + ID_B1 SINE B4 70 212 -12 4 1578 1208 61 0 0 chr1 130175606 130175753 -67019679 + B1_Mm SINE Alu 1 147 0 4 1578 227 246 109 22 chr1 130175835 130175972 -67019460 - L1ME4a LINE L1 -99 6025 5877 4 1578 571 153 240 25 chr1 130176106 130176227 -67019205 + B1F2 SINE Alu 3 149 0 4 1578 385 264 51 0 chr1 130176555 130176690 -67018742 - B1_Mur2 SINE Alu 0 150 8 4 1578 294 257 169 54 chr1 130176601 130176749 -67018683 - MT2B LTR ERVL -349 252 88 4 1578 1145 77 112 0 chr1 130176752 130176922 -67018510 - B2_Mm2 SINE B2 -5 190 2 4 1578 907 51 0 0 chr1 130176924 130177041 -67018391 - B1_Mus2 SINE Alu 0 147 31 4 1578 404 279 189 28 chr1 130177150 130177320 -67018112 - B3A SINE B2 -3 192 1 4 1578 430 245 64 0 chr1 130177381 130177475 -67017957 - RSINE1 SINE B4 -28 137 38 4 1578 1172 55 7 0 chr1 130177748 130177893 -67017539 + B1_Mm SINE Alu 2 147 0 4 1578 885 286 5 9 chr1 130177906 130178121 -67017311 - B3 SINE B2 -2 214 1 4 1578 294 286 58 91 chr1 130178185 130178339 -67017093 + ID_B1 SINE B4 70 218 -6 4 1578 413 269 42 56 chr1 130178204 130178346 -67017086 + B1F1 SINE Alu 10 149 0 4 1578 1014 237 23 19 chr1 130178472 130178687 -67016745 - B3 SINE B2 0 216 1 4 1578 1623 26 5 10 chr1 130178736 130178930 -67016502 + B2_Mm1t SINE B2 1 193 0 4 1578 1051 229 0 23 chr1 130178979 130179198 -67016234 - B3 SINE B2 0 216 3 4 1578 400 246 30 27 chr1 130179339 130179439 -67015993 - PB1D9 SINE Alu -16 104 8 4 1578 1349 191 148 87 chr1 130179441 130179470 -67015962 - RMER19C LTR ERVK 0 611 587 4 1578 1143 113 90 6 chr1 130179470 130179648 -67015784 - B2_Mm2 SINE B2 -1 194 2 4 1578 1036 116 62 28 chr1 130179648 130179825 -67015607 - B2_Mm2 SINE B2 -12 183 1 4 1578 1349 191 148 87 chr1 130179825 130180241 -67015191 - RMER19C LTR ERVK -25 586 139 4 1578 803 184 0 75 chr1 130180316 130180475 -67014957 - B1_Mur3 SINE Alu -2 147 1 4 1578 21 0 0 0 chr1 130180478 130180499 -67014933 + AT_rich Low_complexity Low_complexity 1 21 0 4 1578 409 204 80 36 chr1 130180503 130180615 -67014817 + PB1D9 SINE Alu 2 118 -2 4 1578 297 0 0 0 chr1 130181045 130181078 -67014354 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1578 1284 103 11 21 chr1 130182096 130182284 -67013148 - B2_Mm1t SINE B2 -5 188 3 4 1578 315 276 248 16 chr1 130182315 130182440 -67012992 - RSINE1 SINE B4 -10 155 2 4 1578 529 307 131 12 chr1 130182468 130182636 -67012796 - ID_B1 SINE B4 -34 190 3 4 1578 228 209 0 0 chr1 130183664 130183707 -67011725 - B4 SINE B4 -4 288 246 4 1578 292 320 13 0 chr1 130183701 130183776 -67011656 - B4A SINE B4 -215 77 2 4 1578 243 270 108 0 chr1 130184868 130184978 -67010454 + B4A SINE B4 25 150 -142 4 1578 414 0 0 0 chr1 130185078 130185124 -67010308 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1578 1039 99 0 0 chr1 130185124 130185265 -67010167 - B1_Mur4 SINE Alu 0 150 10 4 1578 327 49 0 0 chr1 130185880 130185921 -67009511 + (CCCCCG)n Simple_repeat Simple_repeat 2 42 0 4 1578 1435 65 21 0 chr1 130187330 130187516 -67007916 - B2_Mm2 SINE B2 -4 191 2 4 1578 3049 55 0 0 chr1 130187569 130187934 -67007498 + L1_Mus1 LINE L1 6202 6566 -1 4 1578 23 0 0 0 chr1 130187998 130188021 -67007411 + AT_rich Low_complexity Low_complexity 1 23 0 4 1578 763 210 147 9 chr1 130188144 130188375 -67007057 + Lx7 LINE L1 6797 7059 -637 4 1578 3580 18 2 0 chr1 130188853 130189248 -67006184 + MTA_Mm LTR MaLR 1 396 0 4 1578 788 270 20 10 chr1 130189296 130189498 -67005934 - ID_B1 SINE B4 -19 205 2 4 1578 195 42 0 0 chr1 130189520 130189544 -67005888 + (TAG)n Simple_repeat Simple_repeat 2 25 0 4 1578 243 0 0 0 chr1 130189558 130189585 -67005847 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1578 359 336 13 39 chr1 130189594 130189749 -67005683 - RSINE1 SINE B4 -11 154 4 4 1578 498 250 78 89 chr1 130189786 130189966 -67005466 + B3A SINE B2 21 198 0 4 1578 535 244 9 9 chr1 130191109 130191225 -67004207 + RSINE1 SINE B4 2 117 -48 4 1578 387 0 0 0 chr1 130191229 130191272 -67004160 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1578 906 233 43 10 chr1 130191285 130191493 -67003939 + ID_B1 SINE B4 1 215 -9 4 1578 594 79 0 0 chr1 130192134 130192223 -67003209 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1578 232 217 84 126 chr1 130192235 130192330 -67003102 - ID_B1 SINE B4 -12 212 122 4 1578 561 98 0 69 chr1 130192802 130192933 -67002499 + GA-rich Low_complexity Low_complexity 4 125 0 4 1578 288 293 217 37 chr1 130192948 130193053 -67002379 + L1MC4a LINE L1 6504 6617 -1265 4 1578 723 262 14 33 chr1 130193053 130193266 -67002166 + ID_B1 SINE B4 2 210 -14 4 1578 372 77 0 0 chr1 130193270 130193322 -67002110 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 4 1578 288 293 217 37 chr1 130193322 130193534 -67001898 + L1MC4a LINE L1 6618 6884 -998 4 1578 502 311 63 63 chr1 130193536 130193681 -67001751 + ID_B1 SINE B4 2 159 -65 4 1578 1147 56 28 0 chr1 130193681 130193824 -67001608 + B1_Mus2 SINE Alu 1 147 0 4 1578 502 311 63 63 chr1 130193824 130193901 -67001531 + ID_B1 SINE B4 160 224 0 4 1578 180 111 0 0 chr1 130193914 130193941 -67001491 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 4 1578 191 189 0 19 chr1 130193960 130194014 -67001418 + GA-rich Low_complexity Low_complexity 1 53 0 4 1578 469 285 153 10 chr1 130194111 130194320 -67001112 + LTR82A LTR ERVL 538 776 -96 4 1578 408 328 16 16 chr1 130194802 130194929 -67000503 + MTEa LTR MaLR 11 137 -242 4 1578 211 301 27 72 chr1 130195581 130195604 -66999828 - BC1_Mm scRNA scRNA -45 107 86 4 1578 866 35 0 17 chr1 130195604 130195719 -66999713 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 4 1578 302 251 9 68 chr1 130195723 130195806 -66999626 - ID SINE ID -207 85 2 4 1578 581 208 6 0 chr1 130195881 130196059 -66999373 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1578 933 243 107 26 chr1 130196059 130196329 -66999103 - B4 SINE B4 0 292 1 5 1578 1093 164 72 21 chr1 130198043 130198236 -66997196 - B3 SINE B2 -11 205 3 5 1578 438 183 61 0 chr1 130198275 130198355 -66997077 - ID_B1 SINE B4 -16 208 124 5 1578 4272 151 93 141 chr1 130198355 130199432 -66996000 + RLTR25B LTR ERVK 3 1027 -1 5 1578 239 267 311 9 chr1 130199432 130199526 -66995906 - ID_B1 SINE B4 -92 132 7 5 1578 423 274 28 0 chr1 130199537 130199643 -66995789 - PB1D10 SINE Alu -7 110 2 5 1578 183 405 0 0 chr1 130200083 130200167 -66995265 + L2a LINE L2 3343 3426 0 5 1578 328 219 17 27 chr1 130200184 130200268 -66995164 + RSINE1 SINE B4 1 85 -207 5 1578 186 43 0 0 chr1 130200273 130200296 -66995136 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 5 1578 414 151 0 0 chr1 130201137 130201210 -66994222 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1578 352 285 106 0 chr1 130201417 130201540 -66993892 + MLT1A LTR MaLR 1 136 -238 5 1578 1402 222 57 84 chr1 130201917 130202285 -66993147 + MTEa LTR MaLR 17 374 -5 5 1578 936 76 241 0 chr1 130202288 130202433 -66992999 + B2_Mm2 SINE B2 2 181 -14 5 1578 377 93 19 0 chr1 130202464 130202518 -66992914 + B2_Mm2 SINE B2 47 101 -94 5 1578 216 0 0 0 chr1 130202533 130202557 -66992875 + (CATA)n Simple_repeat Simple_repeat 1 24 0 5 1578 648 217 16 0 chr1 130202713 130202842 -66992590 + RLTR14 LTR ERV1 102 232 -150 5 1578 348 24 0 0 chr1 130202843 130202884 -66992548 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1578 340 20 41 0 chr1 130202922 130202971 -66992461 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1578 375 284 48 10 chr1 130203071 130203174 -66992258 - PB1D10 SINE Alu -10 107 1 5 1578 263 93 23 0 chr1 130203247 130203290 -66992142 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 5 1578 424 220 186 0 chr1 130203298 130203416 -66992016 + B1F SINE Alu 1 140 -9 5 1578 415 266 21 111 chr1 130203422 130203514 -66991918 + ID SINE ID 3 81 -143 5 1578 238 253 43 54 chr1 130203514 130203606 -66991826 + PB1D9 SINE Alu 1 91 -29 5 1578 593 261 94 94 chr1 130203664 130203757 -66991675 + ID_B1 SINE B4 1 98 -126 5 1578 1105 70 14 7 chr1 130203757 130203900 -66991532 + B1_Mus1 SINE Alu 5 148 0 5 1578 593 261 94 94 chr1 130203900 130204030 -66991402 + ID_B1 SINE B4 99 224 0 5 1578 669 185 18 4 chr1 130204895 130205036 -66990396 + B1_Mur1 SINE Alu 2 148 -1 5 1578 354 180 10 20 chr1 130205038 130205140 -66990292 + GA-rich Low_complexity Low_complexity 4 104 0 5 1578 234 259 78 11 chr1 130205164 130205254 -66990178 + B3 SINE B2 111 206 -10 5 1578 875 265 5 10 chr1 130205562 130205768 -66989664 + MTD LTR MaLR 3 207 -212 5 1578 259 282 23 105 chr1 130205783 130205896 -66989536 + B2_Mm2 SINE B2 81 198 0 5 1578 207 0 0 0 chr1 130205896 130205919 -66989513 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1578 1115 59 0 0 chr1 130205919 130206055 -66989377 - B1_Mus2 SINE Alu -11 136 1 5 1578 259 253 0 149 chr1 130206055 130206083 -66989349 + B2_Mm2 SINE B2 170 194 -1 5 1578 465 133 0 0 chr1 130206083 130206158 -66989274 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 5 1578 1042 151 129 0 chr1 130206160 130206346 -66989086 + MTD LTR MaLR 196 405 -14 5 1578 261 57 0 0 chr1 130206416 130206451 -66988981 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1578 430 264 46 53 chr1 130206460 130206612 -66988820 - RSINE1 SINE B4 -13 152 2 5 1578 504 189 248 40 chr1 130206846 130206995 -66988437 + B3A SINE B2 2 181 -17 5 1578 1013 117 14 0 chr1 130207281 130207426 -66988006 - B1_Mur4 SINE Alu 0 150 4 5 1578 298 253 81 0 chr1 130207451 130207536 -66987896 + B4 SINE B4 4 95 -197 5 1578 761 197 68 0 chr1 130207536 130207683 -66987749 + B3A SINE B2 1 157 -41 5 1578 198 0 0 0 chr1 130207687 130207709 -66987723 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1578 296 180 13 11 chr1 130207711 130207787 -66987645 + B1F SINE Alu 53 123 -24 5 1578 1144 60 0 0 chr1 130208519 130208653 -66986779 + B1_Mus2 SINE Alu 2 135 -12 5 1578 441 0 0 0 chr1 130208654 130208703 -66986729 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1578 1253 232 93 11 chr1 130208757 130209123 -66986309 - Lx9 LINE L1 -127 7517 7122 5 1578 909 230 29 20 chr1 130209282 130209486 -66985946 - ID_B1 SINE B4 -7 217 12 5 1578 354 244 362 25 chr1 130210162 130210322 -66985110 + ID_B1 SINE B4 4 217 -7 5 1578 396 259 0 12 chr1 130210355 130210441 -66984991 + RSINE1 SINE B4 9 93 -72 5 1578 186 216 0 73 chr1 130210582 130210637 -66984795 + MER5A DNA MER1_type 40 90 -99 5 1578 410 171 0 22 chr1 130210659 130210749 -66984683 + C-rich Low_complexity Low_complexity 2 89 0 5 1578 984 243 22 35 chr1 130210766 130210992 -66984440 - ID_B1 SINE B4 0 224 2 5 1578 994 243 52 9 chr1 130211692 130211904 -66983528 + ID_B1 SINE B4 2 222 -2 5 1578 379 239 20 80 chr1 130211943 130212043 -66983389 + PB1D7 SINE Alu 27 120 0 5 1578 257 316 10 30 chr1 130212032 130212133 -66983299 + ID_B1 SINE B4 78 176 -48 5 1578 333 278 0 22 chr1 130212064 130212156 -66983276 + PB1D10 SINE Alu 27 116 -1 5 1578 427 209 11 21 chr1 130214373 130214466 -66980966 - RSINE1 SINE B4 -6 159 68 5 1578 632 223 28 21 chr1 130214476 130214618 -66980814 - B1F2 SINE Alu -1 148 6 5 1578 339 190 112 194 chr1 130214692 130214862 -66980570 + ID_B1 SINE B4 69 224 0 5 1578 1214 55 0 14 chr1 130214913 130215061 -66980371 + B1_Mm SINE Alu 1 146 -1 5 1578 255 61 0 0 chr1 130215066 130215099 -66980333 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1578 514 196 74 9 chr1 130215126 130215234 -66980198 + B1_Mm SINE Alu 1 115 -32 5 1578 280 158 25 50 chr1 130215853 130215890 -66979542 + T-rich Low_complexity Low_complexity 50 83 0 5 1578 8398 68 3 41 chr1 130215890 130216189 -66979243 - Lx3_Mus LINE L1 0 7009 6723 5 1578 1165 59 0 0 chr1 130216189 130216324 -66979108 + B1_Mus2 SINE Alu 1 135 -12 5 1578 203 0 37 0 chr1 130216326 130216353 -66979079 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1578 8398 68 3 41 chr1 130216353 130217193 -66978239 - Lx3_Mus LINE L1 -287 6722 5910 5 1578 280 158 25 50 chr1 130217193 130217235 -66978197 + T-rich Low_complexity Low_complexity 9 49 0 5 1578 851 29 9 0 chr1 130217235 130217340 -66978092 - B1_Mm SINE Alu 0 147 42 5 1578 300 211 77 26 chr1 130217277 130217355 -66978077 - RLTR25B LTR ERVK -519 509 428 5 1578 459 267 91 8 chr1 130217391 130217512 -66977920 - B1_Mur2 SINE Alu -18 131 1 5 1578 606 209 15 58 chr1 130217660 130217797 -66977635 + ID_B1 SINE B4 67 197 -27 5 1578 405 0 0 0 chr1 130217800 130217845 -66977587 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 5 1578 1004 110 13 27 chr1 130218067 130218217 -66977215 + B1_Mur4 SINE Alu 3 150 0 5 1578 899 259 0 30 chr1 130218329 130218528 -66976904 - B3A SINE B2 0 198 6 5 1578 1041 222 20 0 chr1 130218544 130218747 -66976685 - ID_B1 SINE B4 -15 209 3 5 1578 914 241 55 5 chr1 130218925 130218975 -66976457 + B4 SINE B4 1 49 -243 5 1578 2368 135 91 25 chr1 130218975 130219369 -66976063 + MTC LTR MaLR 2 421 0 5 1578 914 241 55 5 chr1 130219369 130219509 -66975923 + B4 SINE B4 50 200 -92 5 1578 417 259 58 41 chr1 130219509 130219630 -66975802 + RSINE1 SINE B4 2 124 -41 5 1578 539 85 12 0 chr1 130219631 130219713 -66975719 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1578 339 260 0 0 chr1 130219866 130219943 -66975489 - ID4_ SINE ID -6 77 1 5 1578 395 38 19 0 chr1 130220204 130220257 -66975175 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1578 360 233 15 7 chr1 130220354 130220476 -66974956 - L1M4 LINE L1 -2509 5486 5363 5 1578 775 182 65 7 chr1 130220627 130220765 -66974667 + B1_Mur2 SINE Alu 2 147 -2 5 1578 555 240 233 31 chr1 130220793 130220952 -66974480 - ID_B1 SINE B4 -20 204 14 5 1578 306 297 39 10 chr1 130221001 130221103 -66974329 - PB1D10 SINE Alu -7 110 6 5 1578 675 226 18 54 chr1 130221026 130221194 -66974238 - ID_B1 SINE B4 -60 164 3 5 1578 375 60 0 0 chr1 130221238 130221288 -66974144 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1578 333 288 38 0 chr1 130221318 130221398 -66974034 - RSINE1 SINE B4 -15 150 68 5 1578 801 232 63 15 chr1 130221458 130221664 -66973768 - B3 SINE B2 0 216 1 5 1578 1255 227 108 35 chr1 130221684 130222090 -66973342 + Lx7 LINE L1 6944 7379 -317 5 1578 537 16 0 0 chr1 130222149 130222211 -66973221 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1578 1216 48 7 0 chr1 130222285 130222431 -66973001 + B1_Mus2 SINE Alu 1 147 0 5 1578 207 0 0 0 chr1 130222431 130222454 -66972978 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1578 370 198 27 98 chr1 130222545 130222558 -66972874 + MT2B LTR ERVL 154 158 -443 5 1578 606 175 29 0 chr1 130222558 130222661 -66972771 + B1_Mur2 SINE Alu 3 108 -41 5 1578 782 150 13 64 chr1 130222741 130222898 -66972534 - B1_Mur3 SINE Alu 0 149 1 5 1578 733 153 27 34 chr1 130222947 130223096 -66972336 - B1_Mur2 SINE Alu -1 148 1 5 1578 438 20 0 0 chr1 130223250 130223301 -66972131 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1578 371 299 30 38 chr1 130223316 130223448 -66971984 - B1F2 SINE Alu -18 131 1 5 1578 1068 153 116 0 chr1 130223654 130223843 -66971589 + B3 SINE B2 1 211 -5 5 1578 706 257 71 5 chr1 130223888 130224072 -66971360 + ID_B1 SINE B4 29 224 0 5 1578 281 266 16 0 chr1 130225119 130225183 -66970249 - B4A SINE B4 -134 158 94 5 1578 716 170 36 22 chr1 130225219 130225357 -66970075 + B1_Mur1 SINE Alu 10 149 0 6 1578 472 200 148 6 chr1 130225375 130225550 -66969882 + B3 SINE B2 6 205 -11 6 1578 213 259 0 18 chr1 130225583 130225638 -66969794 + (TATG)n Simple_repeat Simple_repeat 1 54 0 6 1578 249 260 27 27 chr1 130225732 130225807 -66969625 - RSINE1 SINE B4 -61 104 30 6 1578 513 268 164 5 chr1 130225825 130226020 -66969412 - B4 SINE B4 -64 228 3 6 1578 382 315 100 0 chr1 130226231 130226361 -66969071 - RSINE1 SINE B4 -12 153 11 6 1578 798 36 18 0 chr1 130226389 130226500 -66968932 + B1_Mus2 SINE Alu 34 146 -1 6 1578 269 274 32 0 chr1 130226518 130226580 -66968852 - B3 SINE B2 -13 203 140 6 1578 381 286 127 0 chr1 130226627 130226753 -66968679 - B4 SINE B4 -82 210 69 6 1578 1341 178 159 11 chr1 130226756 130227108 -66968324 + MTC LTR MaLR 18 421 0 6 1578 351 135 158 50 chr1 130227148 130227249 -66968183 - B1_Mur2 SINE Alu -7 142 31 6 1578 228 310 115 0 chr1 130227287 130227374 -66968058 - PB1 SINE Alu -30 97 1 6 1578 1261 41 0 0 chr1 130227797 130227944 -66967488 + B1_Mus2 SINE Alu 1 147 0 6 1578 647 140 85 35 chr1 130228833 130229000 -66966432 - B2_Mm2 SINE B2 -3 192 20 6 1578 225 222 284 0 chr1 130229276 130229357 -66966075 - B3A SINE B2 -91 107 4 6 1578 390 245 9 28 chr1 130229424 130229533 -66965899 + PB1D10 SINE Alu 10 116 -1 6 1578 189 0 0 0 chr1 130230407 130230428 -66965004 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1578 228 35 0 0 chr1 130230458 130230487 -66964945 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 6 1578 489 233 69 0 chr1 130230499 130230615 -66964817 - B1_Mur1 SINE Alu -24 125 2 6 1578 288 279 35 11 chr1 130230743 130230830 -66964602 + B3A SINE B2 99 187 -11 6 1578 309 299 31 0 chr1 130231703 130231800 -66963632 + PB1D10 SINE Alu 1 100 -17 6 1578 463 234 0 92 chr1 130232642 130232716 -66962716 - B3A SINE B2 -8 190 127 6 1578 713 93 263 0 chr1 130232716 130232834 -66962598 + B1_Mur4 SINE Alu 1 149 -1 6 1578 463 234 0 92 chr1 130232834 130232900 -66962532 - B3A SINE B2 -72 126 63 6 1578 2639 44 41 5 chr1 130232900 130233269 -66962163 + MTB LTR MaLR 1 382 -18 6 1578 454 53 11 3 chr1 130233278 130233355 -66962077 - B1_Mur3 SINE Alu -46 81 2 6 1578 554 266 143 26 chr1 130233355 130233544 -66961888 - B3 SINE B2 -1 215 5 6 1578 882 152 0 0 chr1 130233562 130233707 -66961725 - B1_Mur4 SINE Alu 0 150 6 6 1578 584 285 0 0 chr1 130233812 130233949 -66961483 - ID_B1 SINE B4 -6 218 82 6 1578 324 64 0 0 chr1 130234905 130234952 -66960480 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 6 1578 404 218 62 26 chr1 130236176 130236289 -66959143 + ID_B1 SINE B4 108 224 0 6 1578 1547 43 16 0 chr1 130236341 130236526 -66958906 - B2_Mm1a SINE B2 -4 189 2 6 1578 26 30 0 0 chr1 130236531 130236564 -66958868 + AT_rich Low_complexity Low_complexity 1 33 0 6 1578 751 173 75 0 chr1 130236567 130236700 -66958732 + B1_Mur1 SINE Alu 5 147 -2 6 1578 594 236 104 44 chr1 130236706 130236888 -66958544 - B3 SINE B2 -23 193 1 6 1578 787 171 14 14 chr1 130237050 130237192 -66958240 + B1_Mur4 SINE Alu 9 150 0 6 1578 21 0 0 0 chr1 130237210 130237231 -66958201 + AT_rich Low_complexity Low_complexity 1 21 0 6 1578 280 298 153 0 chr1 130237322 130237446 -66957986 - MIR SINE MIR -114 148 6 6 1578 236 234 0 0 chr1 130237651 130237698 -66957734 + ID_B1 SINE B4 163 209 -15 6 1578 5261 62 5 6 chr1 130238056 130238721 -66956711 + L1Md_F2 LINE L1 5914 6577 -5 6 1578 25 31 0 0 chr1 130239225 130239257 -66956175 + AT_rich Low_complexity Low_complexity 1 32 0 6 1578 438 279 135 10 chr1 130239260 130239452 -66955980 - B3 SINE B2 0 216 1 6 1578 248 184 0 75 chr1 130240135 130240188 -66955244 + ID4_ SINE ID 2 50 -33 6 1578 278 368 68 0 chr1 130241206 130241323 -66954109 - RSINE1 SINE B4 -39 126 2 6 1578 26 23 0 23 chr1 130241336 130241357 -66954075 + AT_rich Low_complexity Low_complexity 1 21 0 6 1578 816 178 27 0 chr1 130241357 130241503 -66953929 + B1_Mur4 SINE Alu 1 150 0 6 1578 26 23 0 23 chr1 130241503 130241525 -66953907 + AT_rich Low_complexity Low_complexity 1 22 0 6 1578 1117 68 0 14 chr1 130241529 130241677 -66953755 + B1_Mus1 SINE Alu 2 147 -1 6 1578 382 298 26 26 chr1 130241685 130241802 -66953630 + PB1D10 SINE Alu 1 117 0 6 1578 341 311 25 16 chr1 130242026 130242147 -66953285 + L1MB3 LINE L1 5961 6082 -101 6 1578 431 272 8 31 chr1 130242629 130242758 -66952674 + RSINE1 SINE B4 2 127 -38 6 1578 831 94 17 0 chr1 130243007 130243124 -66952308 - PB1D9 SINE Alu 0 120 2 6 1578 711 276 26 114 chr1 130243463 130243770 -66951662 + B4 SINE B4 13 292 0 6 1578 248 273 38 25 chr1 130243898 130243977 -66951455 + PB1D10 SINE Alu 1 80 -37 6 1578 325 261 68 6 chr1 130244005 130244116 -66951316 + B1F2 SINE Alu 2 144 -5 6 1578 240 217 228 0 chr1 130244281 130244373 -66951059 + MLT1F1 LTR MaLR 129 241 -328 6 1578 757 61 252 0 chr1 130244530 130244645 -66950787 - B1_Mus1 SINE Alu -3 145 2 6 1578 778 254 86 0 chr1 130244651 130244848 -66950584 - B3 SINE B2 -1 215 2 6 1578 735 274 134 4 chr1 130246156 130246402 -66949030 - B4 SINE B4 -14 278 1 6 1578 1200 122 50 0 chr1 130246454 130246635 -66948797 + B2_Mm1t SINE B2 2 191 -2 6 1578 530 266 28 7 chr1 130246673 130246817 -66948615 + B3 SINE B2 70 216 0 6 1578 465 202 64 0 chr1 130247009 130247102 -66948330 + B3 SINE B2 1 99 -117 6 1578 967 208 123 4 chr1 130247102 130247328 -66948104 + MTD LTR MaLR 1 253 -166 6 1578 463 220 44 131 chr1 130247328 130247414 -66948018 - URR1B DNA MER1_type 0 225 140 6 1578 1247 41 0 0 chr1 130247414 130247561 -66947871 + B1_Mus2 SINE Alu 1 147 0 6 1578 463 220 44 131 chr1 130247561 130247657 -66947775 - URR1B DNA MER1_type -86 139 59 6 1578 588 153 179 31 chr1 130247668 130247830 -66947602 + MTD LTR MaLR 234 419 0 6 1578 553 238 39 93 chr1 130248395 130248599 -66946833 - B3A SINE B2 -4 194 2 6 1578 762 190 29 0 chr1 130248684 130248821 -66946611 + B1_Mus1 SINE Alu 1 141 -7 6 1578 216 229 130 98 chr1 130248874 130248966 -66946466 + B4 SINE B4 81 175 -117 6 1578 673 158 33 0 chr1 130249085 130249205 -66946227 - B3 SINE B2 -86 130 7 6 1578 275 190 10 192 chr1 130249215 130249319 -66946113 + B1_Mur2 SINE Alu 17 101 -48 6 1578 612 186 40 17 chr1 130249392 130249534 -66945898 - B1_Mur1 SINE Alu 0 148 5 6 1578 471 292 73 62 chr1 130250515 130250804 -66944628 - B4A SINE B4 0 292 1 6 1578 628 245 22 0 chr1 130251056 130251195 -66944237 + B1_Mur2 SINE Alu 2 143 -6 6 1578 288 316 126 0 chr1 130251492 130251587 -66943845 + RSINE1 SINE B4 40 146 -19 6 1578 319 305 0 54 chr1 130251697 130251808 -66943624 + PB1D10 SINE Alu 6 110 -7 6 1578 488 236 154 0 chr1 130252533 130252656 -66942776 + B3A SINE B2 1 142 -56 6 1578 372 227 133 10 chr1 130252691 130252789 -66942643 - RSINE1 SINE B4 -53 112 3 6 1578 700 223 151 5 chr1 130252826 130253011 -66942421 - B3 SINE B2 -3 213 2 6 1578 425 248 133 0 chr1 130253058 130253171 -66942261 - B1_Mur4 SINE Alu -16 134 7 6 1578 826 34 254 0 chr1 130253223 130253341 -66942091 + B1_Mus1 SINE Alu 1 148 0 6 1578 245 319 130 0 chr1 130253434 130253503 -66941929 + ID SINE ID 3 80 -144 6 1578 250 305 28 28 chr1 130253849 130253957 -66941475 + PB1D10 SINE Alu 2 109 -8 6 1578 225 232 198 20 chr1 130253983 130254084 -66941348 + PB1D9 SINE Alu 1 119 -1 6 1578 239 275 0 68 chr1 130254094 130254168 -66941264 + ID4_ SINE ID 4 72 -11 6 1578 387 229 88 35 chr1 130254259 130254372 -66941060 + PB1D9 SINE Alu 1 119 -1 6 1578 756 141 271 0 chr1 130254579 130254756 -66940676 - URR1A DNA MER1_type -1 225 1 6 1578 524 165 27 36 chr1 130254879 130255012 -66940420 - B1_Mur4 SINE Alu 0 150 23 6 1578 559 261 8 0 chr1 130255736 130255762 -66939670 + ID SINE ID 55 81 -143 6 1578 402 300 0 52 chr1 130255762 130255878 -66939554 + PB1D10 SINE Alu 1 110 -7 6 1578 421 312 139 0 chr1 130256637 130256810 -66938622 + B3A SINE B2 2 198 0 6 1578 294 205 0 117 chr1 130256844 130256938 -66938494 - ID_B1 SINE B4 -1 223 141 6 1578 241 216 36 118 chr1 130256846 130256956 -66938476 - PB1 SINE Alu -2 125 25 6 1578 790 210 79 26 chr1 130257275 130257625 -66937807 - MT2A LTR ERVL -11 522 103 6 1578 225 132 0 0 chr1 130257637 130257675 -66937757 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1578 701 66 19 9 chr1 130257675 130257782 -66937650 - PB1D9 SINE Alu 0 120 13 6 1578 467 170 21 31 chr1 130257780 130257877 -66937555 - B1_Mur3 SINE Alu -16 133 38 6 1578 472 202 50 58 chr1 130257891 130258012 -66937420 - MT2A LTR ERVL -372 161 42 6 1578 462 36 0 0 chr1 130258102 130258158 -66937274 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 6 1578 564 307 133 20 chr1 130258447 130258740 -66936692 + Lx8 LINE L1 6175 6500 -973 6 1578 2234 200 115 10 chr1 130258737 130259241 -66936191 - Lx7 LINE L1 -469 7227 6671 6 1578 316 259 96 85 chr1 130259626 130259803 -66935629 + RMER20B LTR ERVK 233 411 -216 6 1578 211 314 84 47 chr1 130260063 130260170 -66935262 - PB1D10 SINE Alu -5 112 2 6 1578 575 295 58 17 chr1 130260980 130261221 -66934211 - L1MB2 LINE L1 -115 6056 5806 7 1578 1241 41 0 13 chr1 130261224 130261373 -66934059 + B1_Mus2 SINE Alu 1 147 0 7 1578 195 42 0 0 chr1 130261373 130261397 -66934035 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1578 441 0 0 0 chr1 130261404 130261453 -66933979 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1578 354 272 19 122 chr1 130261616 130261750 -66933682 - L1MB2 LINE L1 -400 5783 5662 7 1578 1733 16 0 0 chr1 130261750 130261943 -66933489 - B2_Mm1a SINE B2 0 193 1 7 1578 354 272 19 122 chr1 130261943 130262013 -66933419 - L1MB2 LINE L1 -522 5661 5600 7 1578 333 253 11 0 chr1 130262006 130262093 -66933339 - L1M4 LINE L1 -525 5658 5571 7 1578 430 242 305 0 chr1 130262167 130262342 -66933090 - L1M4 LINE L1 -763 5417 5186 7 1578 519 282 16 2 chr1 130262378 130262533 -66932899 - B3A SINE B2 -57 159 4 7 1578 764 285 28 3 chr1 130262691 130262976 -66932456 - L1M4 LINE L1 -964 5182 4891 7 1578 733 252 68 43 chr1 130262994 130263201 -66932231 - B3 SINE B2 0 216 5 7 1578 243 0 0 0 chr1 130263987 130264014 -66931418 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1578 375 283 26 0 chr1 130264112 130264225 -66931207 + MER5A DNA MER1_type 38 153 -36 7 1578 530 224 19 0 chr1 130264244 130264351 -66931081 + B1_Mur2 SINE Alu 36 144 -5 7 1578 727 154 24 0 chr1 130264514 130264637 -66930795 + B3 SINE B2 5 130 -86 7 1578 25 31 0 0 chr1 130264647 130264679 -66930753 + AT_rich Low_complexity Low_complexity 1 32 0 7 1578 414 132 0 0 chr1 130265048 130265124 -66930308 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 7 1578 1103 65 0 0 chr1 130265767 130265906 -66929526 + B1_Mus1 SINE Alu 1 139 -9 7 1578 525 252 0 22 chr1 130266181 130266315 -66929117 - B3A SINE B2 -67 131 1 7 1578 1165 68 0 0 chr1 130266498 130266644 -66928788 + B1_Mus2 SINE Alu 2 147 0 7 1578 24 0 0 0 chr1 130266714 130266738 -66928694 + AT_rich Low_complexity Low_complexity 1 24 0 7 1578 257 86 0 0 chr1 130267109 130267144 -66928288 - U2 snRNA snRNA -153 35 1 7 1578 356 292 95 74 chr1 130267175 130267192 -66928240 + B4 SINE B4 69 101 -191 7 1578 550 168 123 51 chr1 130267192 130267208 -66928224 + B1_Mus1 SINE Alu 1 14 -134 7 1578 3137 64 10 2 chr1 130267208 130267601 -66927831 + MTA_Mm LTR MaLR 1 396 0 7 1578 356 292 95 74 chr1 130267601 130267715 -66927717 + B4 SINE B4 102 219 -73 7 1578 495 188 241 0 chr1 130267854 130267966 -66927466 - B1_Mm SINE Alu -6 141 3 7 1578 641 233 136 50 chr1 130267990 130268189 -66927243 - B3 SINE B2 0 216 1 7 1578 208 153 68 14 chr1 130268198 130268271 -66927161 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1578 310 160 0 0 chr1 130268308 130268358 -66927074 - B3A SINE B2 -144 54 5 7 1578 363 281 101 8 chr1 130268374 130268503 -66926929 - B1F SINE Alu -8 141 1 7 1578 30 45 0 0 chr1 130268582 130268626 -66926806 + AT_rich Low_complexity Low_complexity 1 44 0 7 1578 1103 68 0 27 chr1 130269550 130269700 -66925732 + B1_Mm SINE Alu 2 147 0 7 1578 207 0 0 0 chr1 130269705 130269728 -66925704 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1578 744 247 59 0 chr1 130269805 130269975 -66925457 + B3A SINE B2 2 181 -17 7 1578 1144 61 0 39 chr1 130270211 130270364 -66925068 - B1_Mus1 SINE Alu -1 147 1 7 1578 250 282 0 0 chr1 130270886 130270964 -66924468 + Tigger14a DNA MER2_type 98 175 -149 7 1578 490 227 18 0 chr1 130271455 130271565 -66923867 - PB1D7 SINE Alu 0 120 9 7 1578 249 220 51 0 chr1 130271513 130271572 -66923860 - B4A SINE B4 -146 146 85 7 1578 297 331 66 8 chr1 130271695 130271817 -66923615 + MER5A1 DNA MER1_type 1 129 -37 7 1578 1310 102 16 16 chr1 130271883 130272073 -66923359 + B2_Mm2 SINE B2 2 191 -4 7 1578 297 265 84 0 chr1 130272199 130272282 -66923150 - B3 SINE B2 -38 178 89 7 1578 345 254 0 0 chr1 130272287 130272354 -66923078 + B3 SINE B2 13 79 -137 7 1578 218 270 104 60 chr1 130272365 130272432 -66923000 - PB1D9 SINE Alu -50 70 1 7 1578 981 99 117 12 chr1 130272955 130273118 -66922314 - B2_Mm2 SINE B2 -14 181 2 7 1578 1585 47 10 5 chr1 130273123 130273317 -66922115 - B2_Mm2 SINE B2 0 195 1 7 1578 1167 35 35 0 chr1 130273346 130273488 -66921944 + B1_Mm SINE Alu 1 147 0 7 1578 2107 108 116 3 chr1 130273491 130273845 -66921587 + L1_Mus3 LINE L1 6244 6637 -1 7 1578 648 230 14 7 chr1 130274063 130274203 -66921229 - B1_Mus2 SINE Alu -6 141 1 7 1578 823 224 32 32 chr1 130274281 130274470 -66920962 - B3 SINE B2 -27 189 1 7 1578 355 261 116 116 chr1 130274505 130274652 -66920780 - RSINE1 SINE B4 -7 158 12 7 1578 431 243 0 61 chr1 130274682 130274796 -66920636 - PB1D9 SINE Alu -8 112 6 7 1578 562 107 149 37 chr1 130274991 130275098 -66920334 + PB1D9 SINE Alu 2 120 0 7 1578 770 170 59 7 chr1 130276420 130276556 -66918876 - B1_Mur4 SINE Alu -5 145 3 7 1578 351 339 68 25 chr1 130276599 130276717 -66918715 - RSINE1 SINE B4 -40 125 3 7 1578 396 59 0 0 chr1 130276873 130276924 -66918508 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 7 1578 314 40 60 0 chr1 130277512 130277562 -66917870 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 7 1578 223 269 58 0 chr1 130277699 130277751 -66917681 + PB1D7 SINE Alu 10 64 -56 7 1578 724 148 129 86 chr1 130278403 130278543 -66916889 + B1_Mur4 SINE Alu 3 148 -2 7 1578 21 36 0 0 chr1 130279939 130279967 -66915465 + AT_rich Low_complexity Low_complexity 1 28 0 7 1578 1502 87 0 5 chr1 130280002 130280188 -66915244 + B2_Mm2 SINE B2 2 186 -9 7 1578 934 214 27 45 chr1 130280215 130280435 -66914997 - B3 SINE B2 0 216 1 7 1578 587 214 199 18 chr1 130280488 130280659 -66914773 - B3 SINE B2 -13 203 2 7 1578 444 327 31 6 chr1 130280691 130280851 -66914581 - RSINE1 SINE B4 0 165 2 7 1578 822 252 28 47 chr1 130281185 130281397 -66914035 - B3 SINE B2 -6 210 3 7 1578 448 280 278 6 chr1 130281625 130281794 -66913638 + ID_B1 SINE B4 3 217 -7 7 1578 453 62 0 0 chr1 130281794 130281859 -66913573 + (CATA)n Simple_repeat Simple_repeat 2 66 0 7 1578 745 246 0 7 chr1 130281860 130282003 -66913429 + RSINE1 SINE B4 2 143 -22 7 1578 537 345 76 25 chr1 130282034 130282272 -66913160 + B4A SINE B4 37 286 -6 7 1578 242 236 67 40 chr1 130282478 130282553 -66912879 - MER102c DNA MER1_type -172 159 83 7 1578 425 309 57 36 chr1 130282599 130282753 -66912679 - ID_B1 SINE B4 -50 242 83 7 1578 430 244 33 0 chr1 130282742 130282832 -66912600 - PB1 SINE Alu -33 94 2 7 1578 614 189 28 0 chr1 130283986 130284092 -66911340 + PB1D9 SINE Alu 2 110 -10 7 1578 537 257 6 69 chr1 130284219 130284378 -66911054 + B4A SINE B4 144 292 0 7 1578 3240 31 3 0 chr1 130284540 130284923 -66910509 + MTA_Mm LTR MaLR 13 396 0 7 1578 568 216 103 8 chr1 130284938 130285064 -66910368 - B1_Mur3 SINE Alu -11 138 1 7 1578 265 271 17 0 chr1 130285410 130285469 -66909963 - ID2 SINE ID -20 63 4 7 197 253 254 16 16 chr1 130285529 130285593 -66909839 - ID4_ SINE ID -19 64 1 7 1579 581 246 219 17 chr1 130285926 130286104 -66909328 - B3 SINE B2 0 216 3 7 1579 29 60 0 0 chr1 130286933 130286983 -66908449 + AT_rich Low_complexity Low_complexity 1 50 0 7 1579 26 30 0 0 chr1 130287080 130287113 -66908319 + AT_rich Low_complexity Low_complexity 1 33 0 7 1579 1408 101 0 5 chr1 130288911 130289111 -66906321 + ORR1A2 LTR MaLR 129 327 0 7 1579 1347 179 239 43 chr1 130289152 130289520 -66905912 + RMER10A LTR ERVL 3 442 0 7 1579 339 292 133 0 chr1 130289811 130289931 -66905501 - ID_B1 SINE B4 -3 221 86 7 1579 362 270 154 14 chr1 130290486 130290620 -66904812 - PB1D7 SINE Alu 0 149 7 7 1579 1472 184 147 24 chr1 130290664 130291004 -66904428 - MTD LTR MaLR 0 419 38 7 1579 2321 164 125 22 chr1 130291008 130291457 -66903975 - RLTR18B LTR ERVK -4 508 14 7 1579 482 158 125 22 chr1 130291539 130291675 -66903757 - MTC-int LTR MaLR 0 1258 1109 7 1579 1492 75 43 0 chr1 130291682 130291869 -66903563 + B2_Mm2 SINE B2 1 195 0 7 1579 887 251 0 16 chr1 130291869 130292059 -66903373 + B3 SINE B2 27 213 -3 7 1579 332 315 111 21 chr1 130292048 130292291 -66903141 - Charlie7 DNA MER1_type -2265 347 83 7 1579 200 184 0 20 chr1 130292311 130292361 -66903071 + GA-rich Low_complexity Low_complexity 4 52 0 7 1579 330 355 41 0 chr1 130292744 130292865 -66902567 + B1F1 SINE Alu 9 134 -15 7 1579 241 284 0 80 chr1 130292959 130293047 -66902385 - ID2 SINE ID 0 83 3 7 1579 970 53 184 0 chr1 130293052 130293204 -66902228 + B2_Mm1t SINE B2 10 189 -4 7 1579 637 239 140 11 chr1 130293238 130293416 -66902016 + B3 SINE B2 15 215 -1 7 1579 1471 64 26 11 chr1 130293539 130293729 -66901703 - B2_Mm2 SINE B2 0 195 3 7 1579 1106 67 0 15 chr1 130294235 130294371 -66901061 - B1_Mus2 SINE Alu -13 134 1 7 1579 544 284 79 114 chr1 130294648 130294938 -66900494 - B4 SINE B4 -10 282 3 7 1579 640 307 101 0 chr1 130294974 130295153 -66900279 - B3 SINE B2 -15 201 5 7 1579 1260 48 7 0 chr1 130295191 130295338 -66900094 - B1_Mus1 SINE Alu 0 148 1 7 1579 529 162 19 19 chr1 130296031 130296138 -66899294 + B1F2 SINE Alu 42 148 -1 7 1579 183 374 36 0 chr1 130296485 130296568 -66898864 - L3b LINE CR1 -89 393 308 7 1579 884 247 110 86 chr1 130298019 130298257 -66897175 + Tigger9b DNA MER2_type 242 500 -124 7 1579 1271 21 7 7 chr1 130298257 130298403 -66897029 + B1_Mus1 SINE Alu 2 147 -1 8 1579 884 247 110 86 chr1 130298403 130298536 -66896896 + Tigger9b DNA MER2_type 501 622 -2 7 1579 207 0 0 0 chr1 130299119 130299142 -66896290 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1579 249 222 0 22 chr1 130299791 130299837 -66895595 - MurSatRep1 Unknown Unknown -1873 264 220 8 1579 931 300 66 8 chr1 130300002 130300261 -66895171 - B4 SINE B4 0 292 19 8 1579 703 115 205 0 chr1 130300567 130300689 -66894743 - B1_Mus1 SINE Alu 0 148 2 8 1579 790 155 25 123 chr1 130301003 130301165 -66894267 + B1_Mur4 SINE Alu 5 150 0 8 1579 231 146 0 0 chr1 130301165 130301206 -66894226 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1579 29 0 0 0 chr1 130302904 130302933 -66892499 + AT_rich Low_complexity Low_complexity 1 29 0 8 1579 472 249 2 7 chr1 130303050 130303153 -66892279 + B1_Mm SINE Alu 1 99 -21 8 1579 429 209 0 23 chr1 130303761 130303849 -66891583 - B1_Mur3 SINE Alu -5 144 59 8 1579 1474 77 16 0 chr1 130304036 130304218 -66891214 + B2_Mm2 SINE B2 2 186 -9 8 1579 1005 82 89 0 chr1 130304225 130304360 -66891072 + B1_Mus2 SINE Alu 1 147 0 8 1579 786 237 83 16 chr1 130304640 130304833 -66890599 + B3 SINE B2 3 208 -8 8 1579 449 333 42 7 chr1 130304968 130305110 -66890322 + B1_Mur1 SINE Alu 3 149 0 8 1579 22 70 0 0 chr1 130305158 130305201 -66890231 + AT_rich Low_complexity Low_complexity 1 43 0 8 1579 992 68 6 197 chr1 130305207 130305390 -66890042 + B1_Mus1 SINE Alu 1 148 0 8 1579 780 295 15 49 chr1 130305508 130305787 -66889645 - B4A SINE B4 -21 271 5 8 1579 36 23 0 0 chr1 130305789 130305832 -66889600 + AT_rich Low_complexity Low_complexity 1 43 0 8 1579 417 252 148 8 chr1 130306268 130306396 -66889036 + ID_B1 SINE B4 78 223 -1 8 1579 535 248 8 0 chr1 130306551 130306668 -66888764 + B3 SINE B2 6 123 -93 8 1579 690 162 65 22 chr1 130306805 130306944 -66888488 + B1_Mur3 SINE Alu 3 147 -2 8 1579 1026 38 15 0 chr1 130307077 130307208 -66888224 + B1_Mus1 SINE Alu 16 148 0 8 1579 258 132 0 0 chr1 130307208 130307261 -66888171 + (A)n Simple_repeat Simple_repeat 1 53 0 8 1579 801 184 64 0 chr1 130307395 130307536 -66887896 - B1_Mur4 SINE Alu 0 150 1 8 1579 1268 54 0 0 chr1 130308034 130308181 -66887251 + B1_Mus2 SINE Alu 1 147 0 8 1579 195 129 0 0 chr1 130308227 130308258 -66887174 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1579 500 170 34 11 chr1 130308372 130308461 -66886971 + B3A SINE B2 1 91 -107 8 1579 297 0 0 0 chr1 130308472 130308505 -66886927 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1579 1036 59 0 35 chr1 130308505 130308646 -66886786 - B1_Mm SINE Alu 0 147 12 8 1579 627 211 113 0 chr1 130308685 130308818 -66886614 + B1_Mur1 SINE Alu 1 148 -1 8 1579 333 47 0 0 chr1 130308973 130309016 -66886416 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1579 21 36 0 0 chr1 130309171 130309199 -66886233 + AT_rich Low_complexity Low_complexity 1 28 0 8 1579 845 142 140 53 chr1 130309294 130309465 -66885967 + B2_Mm2 SINE B2 1 186 -9 8 1579 1042 67 234 26 chr1 130309571 130309725 -66885707 + B2_Mm2 SINE B2 1 186 -9 8 1579 561 271 8 93 chr1 130309956 130310192 -66885240 + B3 SINE B2 1 216 0 8 1579 313 180 32 16 chr1 130310996 130311058 -66884374 + URR1B DNA MER1_type 1 63 -162 8 1579 1252 61 0 0 chr1 130311269 130311416 -66884016 + B1_Mus2 SINE Alu 1 147 0 8 1579 874 170 28 0 chr1 130311475 130311616 -66883816 + B1_Mur4 SINE Alu 5 149 -1 8 1579 422 234 35 99 chr1 130311632 130311774 -66883658 + ID_B1 SINE B4 79 211 -13 8 1579 270 0 0 0 chr1 130311774 130311804 -66883628 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1579 533 176 39 0 chr1 130314173 130314275 -66881157 - PB1D7 SINE Alu -7 113 8 8 1579 352 274 39 19 chr1 130314197 130314301 -66881131 - B4 SINE B4 -122 170 65 8 1579 261 216 0 0 chr1 130314703 130314758 -66880674 + B1F SINE Alu 72 147 -2 8 1579 353 289 0 0 chr1 130316587 130316684 -66878748 - RMER4B LTR ERVK -144 441 345 8 1579 3493 330 66 50 chr1 130316686 130318760 -66876672 - RodERV21-int LTR ERV1 -167 4824 2718 8 1579 207 0 0 0 chr1 130318872 130318895 -66876537 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1579 1179 58 0 21 chr1 130318895 130319036 -66876396 - B1_Mm SINE Alu -9 138 1 8 1579 273 203 34 0 chr1 130319264 130319323 -66876109 - MuLV-int LTR ERV1 -2658 4948 4888 8 1579 423 0 0 0 chr1 130319408 130319455 -66875977 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1579 1028 110 98 0 chr1 130319542 130319705 -66875727 + B2_Mm1t SINE B2 1 179 -14 8 1579 310 70 0 17 chr1 130319811 130319869 -66875563 + B2_Mm2 SINE B2 137 193 -2 8 1579 2018 142 3 21 chr1 130319869 130320199 -66875233 + Lx LINE L1 6326 6649 -5 8 1579 22 0 0 0 chr1 130320205 130320227 -66875205 + AT_rich Low_complexity Low_complexity 1 22 0 8 1579 472 288 26 34 chr1 130320604 130320838 -66874594 - MER52-int LTR ERV1 -1985 5106 4875 8 1579 202 200 0 24 chr1 130321017 130321058 -66874374 + G-rich Low_complexity Low_complexity 1 40 0 8 1579 1770 234 36 31 chr1 130321526 130321941 -66873491 - RodERV21-int LTR ERV1 -3844 1147 731 8 1579 1207 236 52 16 chr1 130321986 130322292 -66873140 - RodERV21-int LTR ERV1 -4674 317 1 8 1579 458 171 97 233 chr1 130322632 130322747 -66872685 + MLT1B LTR MaLR 2 95 -295 8 1579 1302 34 0 0 chr1 130322747 130322893 -66872539 - B1_Mm SINE Alu 0 147 2 8 1579 458 171 97 233 chr1 130322893 130322983 -66872449 + MLT1B LTR MaLR 96 179 -211 8 1579 3964 143 10 6 chr1 130323000 130323621 -66871811 + RLTR18-int LTR ERVK 2794 3416 -1945 8 1579 2094 100 84 12 chr1 130323623 130323957 -66871475 - ORR1B2 LTR MaLR -8 359 2 8 1579 8421 184 53 58 chr1 130323963 130324839 -66870593 + RLTR18-int LTR ERVK 3423 4305 -1056 8 1579 1543 78 16 0 chr1 130324839 130325031 -66870401 + B2_Mm2 SINE B2 1 195 0 8 1579 8421 184 53 58 chr1 130325031 130325770 -66869662 + RLTR18-int LTR ERVK 4306 5035 -326 8 1579 3438 46 10 5 chr1 130325770 130326164 -66869268 + MTA_Mm LTR MaLR 1 396 0 8 1579 7498 82 29 75 chr1 130326164 130327316 -66868116 + MTA_Mm-int LTR MaLR 1 1098 0 8 1579 3184 65 34 3 chr1 130327316 130327704 -66867728 + MTA_Mm LTR MaLR 1 400 0 8 1579 8421 184 53 58 chr1 130327704 130328034 -66867398 + RLTR18-int LTR ERVK 5036 5359 -2 8 1579 2796 160 24 73 chr1 130328035 130328567 -66866865 + RLTR18B LTR ERVK 1 506 -6 8 1579 462 323 50 86 chr1 130328553 130328773 -66866659 + MLT1B LTR MaLR 179 390 0 8 1579 373 283 125 0 chr1 130328773 130328891 -66866541 + MER5A DNA MER1_type 47 179 -10 8 1579 254 342 38 0 chr1 130329047 130329126 -66866306 - ZP3AR Satellite Satellite -106 106 25 8 1579 853 137 0 8 chr1 130329255 130329380 -66866052 - B3 SINE B2 -92 124 1 8 1579 240 299 25 38 chr1 130329587 130329667 -66865765 - ID2 SINE ID -3 80 2 8 1579 815 332 5 0 chr1 130331095 130331180 -66864252 + B4A SINE B4 1 86 -206 8 1579 269 376 14 50 chr1 130331180 130331320 -66864112 + B1_Mur3 SINE Alu 1 135 -14 8 1579 2465 114 79 59 chr1 130331390 130331845 -66863587 + RMER16 LTR ERVK 70 533 0 8 1579 380 291 0 0 chr1 130331845 130331930 -66863502 + B4A SINE B4 207 291 -1 8 1579 431 256 94 86 chr1 130332104 130332442 -66862990 + MLT1G3 LTR MaLR 72 460 -29 8 1579 767 265 136 49 chr1 130332640 130332889 -66862543 + ORR1E LTR MaLR 1 278 -81 8 1579 204 97 0 0 chr1 130332904 130332935 -66862497 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1579 1651 188 85 9 chr1 130332938 130333311 -66862121 + MTD LTR MaLR 12 406 -13 8 1579 3499 167 100 27 chr1 130333433 130333523 -66861909 + RLTR25B LTR ERVK 1 88 -940 8 1579 443 60 15 0 chr1 130333523 130333590 -66861842 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1579 3499 167 107 28 chr1 130333590 130334359 -66861073 + RLTR25B LTR ERVK 89 1028 0 8 1579 249 306 12 28 chr1 130334413 130334538 -66860894 - MIRb SINE MIR -109 159 28 8 1579 1118 159 5 5 chr1 130334632 130334821 -66860611 - B2_Mm2 SINE B2 -6 189 1 8 1579 34 0 0 0 chr1 130335121 130335155 -66860277 + AT_rich Low_complexity Low_complexity 1 34 0 8 1579 211 280 147 37 chr1 130335372 130335535 -66859897 + MIRm SINE MIR 14 194 -82 8 1579 261 289 0 30 chr1 130335732 130335832 -66859600 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 8 1579 336 285 144 56 chr1 130335833 130335993 -66859439 - B4A SINE B4 -3 289 116 8 1579 24 0 0 0 chr1 130336834 130336858 -66858574 + AT_rich Low_complexity Low_complexity 1 24 0 8 1579 340 323 83 6 chr1 130338038 130338194 -66857238 + B3A SINE B2 6 173 -25 8 1579 1478 78 16 0 chr1 130338214 130338406 -66857026 + B2_Mm2 SINE B2 1 195 0 8 1579 328 272 77 49 chr1 130338636 130338779 -66856653 - B1F1 SINE Alu -2 147 1 8 1579 736 182 50 104 chr1 130338920 130339081 -66856351 + ORR1D2 LTR MaLR 180 335 -35 8 1579 315 0 0 0 chr1 130339081 130339116 -66856316 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1579 1031 93 7 7 chr1 130339116 130339252 -66856180 - B1_Mus2 SINE Alu -4 143 7 8 1579 736 182 50 104 chr1 130339252 130339296 -66856136 + ORR1D2 LTR MaLR 336 369 -1 8 1579 308 215 12 48 chr1 130339351 130339434 -66855998 - ID_B1 SINE B4 -9 215 136 8 1579 241 296 48 73 chr1 130339399 130339523 -66855909 + RSINE1 SINE B4 45 165 0 8 1579 234 194 0 0 chr1 130339527 130339589 -66855843 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1579 700 215 220 0 chr1 130339648 130339825 -66855607 + B3 SINE B2 1 216 0 8 1579 680 237 202 0 chr1 130339910 130340083 -66855349 - ID_B1 SINE B4 -16 208 1 8 1579 789 65 0 9 chr1 130340166 130340265 -66855167 + B1_Mus1 SINE Alu 1 98 -50 8 1579 600 218 121 0 chr1 130340265 130340389 -66855043 + B1_Mus2 SINE Alu 3 141 -6 8 1579 297 129 0 8 chr1 130340415 130340471 -66854961 + B1_Mur4 SINE Alu 85 141 -9 8 1579 279 0 0 0 chr1 130340471 130340502 -66854930 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1579 24 0 0 0 chr1 130340811 130340835 -66854597 + AT_rich Low_complexity Low_complexity 1 24 0 8 1579 688 281 0 27 chr1 130341742 130341925 -66853507 - B3A SINE B2 -16 182 5 8 1579 317 209 45 34 chr1 130342043 130342132 -66853300 - PB1D9 SINE Alu 0 120 31 8 1579 678 189 0 0 chr1 130342124 130342235 -66853197 - B1_Mur3 SINE Alu -32 117 7 8 1579 189 107 0 0 chr1 130342520 130342548 -66852884 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 9 1579 342 107 0 0 chr1 130342796 130342852 -66852580 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1579 227 160 36 91 chr1 130342859 130342914 -66852518 - L1M2 LINE L1 -383 5917 5866 9 1579 673 279 14 33 chr1 130343061 130343276 -66852156 - Lx7 LINE L1 -1873 5823 5613 9 1579 588 229 173 46 chr1 130343352 130343549 -66851883 - ID_B1 SINE B4 -1 223 2 9 1579 342 0 0 0 chr1 130343591 130343629 -66851803 + (TC)n Simple_repeat Simple_repeat 2 39 0 9 1579 234 0 0 0 chr1 130343629 130343654 -66851778 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1579 339 25 0 0 chr1 130343654 130343693 -66851739 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1579 276 250 169 32 chr1 130343701 130343825 -66851607 - B3A SINE B2 -55 143 3 9 1579 5653 188 43 11 chr1 130344513 130345563 -66849869 + Lx5 LINE L1 5714 6796 -254 9 1579 343 259 25 0 chr1 130345564 130345645 -66849787 + G-rich Low_complexity Low_complexity 3 85 0 9 1579 1071 117 0 3 chr1 130345645 130345995 -66849437 + (GGA)n Simple_repeat Simple_repeat 1 349 0 9 1579 1108 148 14 50 chr1 130346074 130346294 -66849138 + URR1A DNA MER1_type 1 212 -14 9 1579 910 261 9 14 chr1 130346317 130346527 -66848905 - B4A SINE B4 -83 209 1 9 1579 186 43 0 0 chr1 130346535 130346558 -66848874 + (TTA)n Simple_repeat Simple_repeat 2 24 0 9 1579 941 209 0 0 chr1 130346558 130346735 -66848697 - B3 SINE B2 -38 178 2 9 1579 635 262 124 34 chr1 130346735 130346942 -66848490 - B4A SINE B4 -65 227 2 9 1579 356 273 182 0 chr1 130347172 130347282 -66848150 + ID_B1 SINE B4 82 211 -13 9 1579 234 0 0 0 chr1 130347284 130347310 -66848122 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 9 1579 463 222 49 97 chr1 130347503 130347688 -66847744 + MER5B DNA MER1_type 1 176 -2 9 1579 202 291 55 55 chr1 130347730 130347821 -66847611 - L2c LINE L2 -2 3385 3295 9 1579 472 308 118 37 chr1 130349516 130349762 -66845670 + Lx8 LINE L1 7020 7285 -188 9 1579 658 34 68 0 chr1 130349800 130349918 -66845514 + (GA)n Simple_repeat Simple_repeat 1 126 0 9 1579 423 0 0 0 chr1 130350003 130350050 -66845382 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 9 1579 252 143 0 0 chr1 130350052 130350094 -66845338 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 1579 1115 189 19 0 chr1 130350458 130350670 -66844762 - B3 SINE B2 0 216 1 9 1579 996 263 5 0 chr1 130351163 130351376 -66844056 - ID_B1 SINE B4 -10 214 1 9 1579 282 235 169 0 chr1 130351467 130351603 -66843829 - L1MA5A LINE L1 -85 6212 6054 9 1579 969 243 14 0 chr1 130351640 130351854 -66843578 + ID_B1 SINE B4 1 217 -7 9 1579 597 301 26 0 chr1 130352080 130352236 -66843196 + RSINE1 SINE B4 4 163 -2 9 1579 461 283 204 29 chr1 130352343 130352583 -66842849 - B4A SINE B4 -7 285 4 9 1579 261 0 0 0 chr1 130352889 130352918 -66842514 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1579 558 248 77 18 chr1 130353092 130353260 -66842172 + B4A SINE B4 10 187 -105 9 1579 351 0 0 0 chr1 130353382 130353421 -66842011 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 9 1579 272 250 0 29 chr1 130354214 130354284 -66841148 + CT-rich Low_complexity Low_complexity 4 71 0 9 1579 576 275 79 37 chr1 130354300 130354515 -66840917 - ID_B1 SINE B4 0 224 1 9 1579 585 79 285 31 chr1 130354646 130354776 -66840656 - URR1A DNA MER1_type -59 167 5 9 1579 363 250 13 0 chr1 130355108 130355184 -66840248 - ID4 SINE ID -6 77 1 9 1579 450 53 0 0 chr1 130355192 130355249 -66840183 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 9 1579 341 185 0 0 chr1 130355249 130355314 -66840118 - ID_B1 SINE B4 -10 214 150 9 1579 272 27 27 0 chr1 130355375 130355412 -66840020 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 1579 1082 179 75 0 chr1 130355420 130355621 -66839811 - B3 SINE B2 0 216 1 9 1579 270 325 40 24 chr1 130355696 130355822 -66839610 - B1F SINE Alu -21 128 1 9 1579 693 245 0 7 chr1 130355822 130355894 -66839538 - ID SINE ID -143 81 11 9 1579 582 15 0 0 chr1 130356343 130356410 -66839022 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1579 1086 264 35 21 chr1 130356477 130356763 -66838669 + B4 SINE B4 1 290 -2 9 1579 745 184 7 7 chr1 130357659 130357796 -66837636 + B1_Mur1 SINE Alu 5 141 -8 9 1579 816 251 29 10 chr1 130357979 130358188 -66837244 + B3 SINE B2 4 216 0 9 1579 426 101 0 0 chr1 130358291 130358360 -66837072 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1579 622 282 26 21 chr1 130358690 130358882 -66836550 + B4A SINE B4 41 233 -59 9 1579 435 83 0 0 chr1 130358883 130358943 -66836489 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1579 597 217 156 19 chr1 130359234 130359335 -66836097 - ID_B1 SINE B4 -35 189 66 9 1579 432 0 0 0 chr1 130359335 130359383 -66836049 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1579 597 217 156 19 chr1 130359383 130359441 -66835991 - ID SINE ID -159 65 8 9 1579 1294 73 5 59 chr1 130359601 130359805 -66835627 - B2_Mm2 SINE B2 -2 193 1 9 1579 612 213 77 14 chr1 130359826 130359969 -66835463 - RSINE1 SINE B4 -12 153 2 9 1579 902 242 16 0 chr1 130360894 130361080 -66834352 + ID_B1 SINE B4 1 189 -35 9 1579 243 0 0 0 chr1 130361146 130361173 -66834259 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1579 235 221 22 154 chr1 130361190 130361281 -66834151 + ID2 SINE ID 1 79 -4 9 1579 231 167 278 10 chr1 130361326 130361423 -66834009 + MIR SINE MIR 75 197 -65 9 1579 354 301 9 17 chr1 130361628 130361743 -66833689 - PB1D10 SINE Alu -3 114 1 9 1579 546 293 96 5 chr1 130361769 130361968 -66833464 - ID_B1 SINE B4 -6 218 2 9 1579 227 319 123 9 chr1 130362380 130362494 -66832938 + MamSINE1 SINE tRNA 38 164 -126 9 1579 644 276 140 16 chr1 130363100 130363343 -66832089 + B4A SINE B4 8 280 -12 9 1579 207 0 0 0 chr1 130363351 130363374 -66832058 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 1579 767 249 81 5 chr1 130363548 130363746 -66831686 + ID_B1 SINE B4 3 215 -9 9 1579 489 110 0 0 chr1 130363760 130363833 -66831599 + (TC)n Simple_repeat Simple_repeat 1 73 0 9 1579 180 0 0 0 chr1 130364222 130364242 -66831190 + (CAA)n Simple_repeat Simple_repeat 3 22 0 9 1579 387 0 0 0 chr1 130364631 130364674 -66830758 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1579 218 254 0 0 chr1 130364957 130365012 -66830420 - L2a LINE L2 -2 3424 3370 9 1579 1169 56 0 0 chr1 130365353 130365497 -66829935 - B1_Mus1 SINE Alu -4 144 1 9 1579 467 267 50 39 chr1 130365523 130365697 -66829735 - B4A SINE B4 -51 173 1 9 1579 563 217 206 26 chr1 130366091 130366157 -66829275 - ID_B1 SINE B4 -1 223 141 9 1579 1028 45 0 7 chr1 130366157 130366292 -66829140 + (TCC)n Simple_repeat Simple_repeat 2 135 0 9 1579 563 217 206 26 chr1 130366292 130366414 -66829018 - ID_B1 SINE B4 -84 140 1 9 1579 433 218 80 18 chr1 130366609 130366721 -66828711 + PB1D7 SINE Alu 1 119 -1 9 1579 182 37 37 0 chr1 130366723 130366750 -66828682 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1579 298 260 18 91 chr1 130366750 130366860 -66828572 + MT2B LTR ERVL 163 264 -337 9 1579 683 169 39 0 chr1 130366764 130366894 -66828538 + B1_Mm SINE Alu 13 147 0 9 1579 544 236 74 15 chr1 130366945 130367111 -66828321 + B3A SINE B2 1 160 -33 9 1579 530 76 25 0 chr1 130367111 130367190 -66828242 + (CATA)n Simple_repeat Simple_repeat 2 82 0 9 1579 310 292 36 73 chr1 130367190 130367215 -66828217 + B2_Mm1a SINE B2 161 185 -8 9 1579 306 0 0 0 chr1 130367288 130367322 -66828110 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 9 1579 898 266 3 129 chr1 130367677 130367974 -66827458 + B4 SINE B4 3 271 -21 9 1579 189 0 0 0 chr1 130367974 130367995 -66827437 + (CATA)n Simple_repeat Simple_repeat 4 24 0 9 1579 898 266 3 129 chr1 130367995 130368029 -66827403 + B4 SINE B4 272 292 0 9 1579 228 135 0 0 chr1 130368039 130368076 -66827356 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1579 1631 304 56 19 chr1 130369736 130370461 -66824971 + Lx6 LINE L1 5006 5759 -121 9 1579 195 42 0 0 chr1 130370461 130370485 -66824947 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 1579 1631 251 89 66 chr1 130370485 130370628 -66824804 + Lx6 LINE L1 5760 5898 -1562 9 1579 529 205 125 0 chr1 130370733 130370845 -66824587 + B1_Mus2 SINE Alu 11 136 -11 9 1579 269 118 0 19 chr1 130370876 130370928 -66824504 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 9 1579 1854 33 0 0 chr1 130371196 130371411 -66824021 - L1Md_F2 LINE L1 -272 6310 6096 9 1579 1541 88 87 52 chr1 130371411 130371583 -66823849 + L1Md_F2 LINE L1 6322 6481 -101 9 1579 183 80 0 0 chr1 130371583 130371608 -66823824 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 9 1579 1541 88 87 52 chr1 130371608 130371687 -66823745 + L1Md_F2 LINE L1 6482 6580 -2 9 1579 577 239 179 36 chr1 130372355 130372550 -66822882 + ID_B1 SINE B4 2 224 0 9 1579 808 117 142 0 chr1 130372596 130372716 -66822716 + B1_Mur4 SINE Alu 2 138 -12 9 1579 276 30 0 0 chr1 130372719 130372752 -66822680 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1579 195 114 0 0 chr1 130372798 130372833 -66822599 + (TATG)n Simple_repeat Simple_repeat 2 36 0 9 1579 426 289 0 0 chr1 130372833 130372937 -66822495 - PB1D10 SINE Alu -13 104 1 9 1579 1375 231 46 22 chr1 130373063 130373430 -66822002 - MTEb LTR MaLR 0 379 4 9 1579 340 254 6 212 chr1 130373690 130373850 -66821582 - ID_B1 SINE B4 0 224 98 9 1579 295 309 0 0 chr1 130374031 130374112 -66821320 - ID SINE ID -142 82 2 9 1579 1037 237 64 8 chr1 130374191 130374455 -66820977 - MTD LTR MaLR -14 405 127 9 1579 1072 90 21 0 chr1 130374669 130374813 -66820619 - B1_Mus2 SINE Alu 0 147 1 9 1579 267 31 0 0 chr1 130375052 130375084 -66820348 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1579 525 293 0 13 chr1 130375272 130375424 -66820008 + B4A SINE B4 3 152 -140 9 1579 526 247 31 128 chr1 130375435 130375630 -66819802 + B3A SINE B2 30 205 -11 9 1579 224 194 0 0 chr1 130375630 130375666 -66819766 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1579 1206 48 14 0 chr1 130375716 130375863 -66819569 - B1_Mur4 SINE Alu 0 150 2 1 1579 180 77 0 0 chr1 130375940 130375966 -66819466 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1579 239 71 24 0 chr1 130376536 130376578 -66818854 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1579 363 227 0 39 chr1 130376678 130376756 -66818676 - ID4 SINE ID -7 76 2 1 1579 466 200 0 0 chr1 130376757 130376849 -66818583 - B4A SINE B4 -62 230 139 1 1579 1677 192 58 39 chr1 130376849 130377283 -66818149 + RMER10A LTR ERVL 1 442 0 1 1579 618 230 22 0 chr1 130377293 130377432 -66818000 - B4 SINE B4 -150 142 1 1 1579 529 252 24 23 chr1 130378032 130378187 -66817245 - B3A SINE B2 -12 204 49 1 1579 445 147 107 27 chr1 130378187 130378299 -66817133 + RLTR15 LTR ERVK 1 121 -238 1 1579 333 265 47 61 chr1 130378426 130378639 -66816793 + RLTR15 LTR ERVK 133 342 -17 1 1579 450 0 0 0 chr1 130378641 130378691 -66816741 + (TTA)n Simple_repeat Simple_repeat 3 52 0 1 1579 262 211 0 0 chr1 130378691 130378743 -66816689 - B3A SINE B2 -146 52 1 1 1579 376 302 5 11 chr1 130378754 130378943 -66816489 - ID_B1 SINE B4 -6 218 2 1 1579 382 304 10 59 chr1 130378995 130379144 -66816288 - PB1D10 SINE Alu 0 147 1 1 1579 499 316 18 94 chr1 130379176 130379347 -66816085 - RSINE1 SINE B4 0 165 8 1 1579 326 264 14 0 chr1 130380003 130380075 -66815357 + ID4 SINE ID 1 73 -10 1 1579 315 71 0 0 chr1 130380137 130380179 -66815253 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 1579 696 157 0 8 chr1 130380210 130380332 -66815100 - B1_Mus2 SINE Alu -1 146 26 1 1579 40518 24 1 6 chr1 130380456 130386521 -66808911 - L1Md_T LINE L1 0 6582 561 1 1579 2019 111 6 16 chr1 130387225 130387544 -66807888 + ORR1A4 LTR MaLR 14 329 0 1 1579 275 242 76 0 chr1 130387863 130387929 -66807503 - ID4 SINE ID -2 81 11 1 1579 507 73 0 0 chr1 130387966 130388034 -66807398 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1579 279 0 0 0 chr1 130388101 130388132 -66807300 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1579 605 145 29 6 chr1 130388144 130388317 -66807115 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 1 1579 285 51 0 0 chr1 130388333 130388372 -66807060 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1579 804 307 50 32 chr1 130388530 130388775 -66806657 - B4 SINE B4 0 292 42 1 1579 2623 137 31 12 chr1 130388775 130389188 -66806244 + MTC LTR MaLR 1 421 0 1 1579 804 307 50 32 chr1 130389188 130389221 -66806211 - B4 SINE B4 -251 41 9 1 1579 785 291 116 3 chr1 130389454 130389757 -66805675 + Lx8 LINE L1 6939 7275 -198 1 1579 2629 71 3 0 chr1 130390092 130390417 -66805015 + ORR1A2 LTR MaLR 1 326 -1 1 1579 288 0 0 0 chr1 130390855 130390887 -66804545 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1579 250 211 118 0 chr1 130391294 130391370 -66804062 + Lx8 LINE L1 6939 7023 -450 1 1579 1233 245 32 4 chr1 130391763 130392042 -66803390 + B4A SINE B4 2 288 -4 1 1579 456 19 0 0 chr1 130392401 130392454 -66802978 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1579 280 202 24 12 chr1 130393184 130393269 -66802163 + CT-rich Low_complexity Low_complexity 5 90 0 1 1579 450 269 25 69 chr1 130393273 130393433 -66801999 - ID_B1 SINE B4 -2 222 70 1 1579 585 162 9 0 chr1 130393433 130393541 -66801891 - ORR1B1 LTR MaLR 0 394 286 1 1579 1679 131 11 104 chr1 130393541 130393898 -66801534 + ORR1A4 LTR MaLR 1 324 -5 1 1579 698 117 9 0 chr1 130393897 130394008 -66801424 - ORR1B1 LTR MaLR -282 112 1 1 1579 327 284 0 13 chr1 130394008 130394081 -66801351 - ID4_ SINE ID -10 73 2 1 1579 524 260 143 0 chr1 130394374 130394570 -66800862 - ID_B1 SINE B4 0 224 1 1 1579 412 222 14 20 chr1 130394591 130394738 -66800694 + (TATATG)n Simple_repeat Simple_repeat 6 151 0 1 1579 278 321 95 17 chr1 130394835 130395076 -66800356 - L1ME1 LINE L1 -172 6007 5748 1 1579 322 247 14 0 chr1 130395082 130395155 -66800277 + B4A SINE B4 1 74 -218 1 1579 1926 214 122 7 chr1 130395159 130395462 -66799970 + Lx6 LINE L1 6822 7170 -290 1 1579 1186 62 0 0 chr1 130395462 130395608 -66799824 - B1_Mus2 SINE Alu -1 146 1 1 1579 1926 214 122 7 chr1 130395608 130395722 -66799710 + Lx6 LINE L1 7171 7287 -173 1 1579 521 320 58 0 chr1 130395745 130395901 -66799531 + B4A SINE B4 66 230 -62 1 1579 402 115 0 0 chr1 130396017 130396078 -66799354 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1579 258 250 0 0 chr1 130396222 130396278 -66799154 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1579 496 273 49 12 chr1 130396287 130396450 -66798982 - B4A SINE B4 0 292 124 1 1579 441 254 82 0 chr1 130396466 130396588 -66798844 - ID_B1 SINE B4 -5 219 88 1 1579 254 72 0 67 chr1 130396595 130396640 -66798792 - L1MCa LINE L1 -4297 2211 2170 1 1579 582 250 64 0 chr1 130396680 130396836 -66798596 - B3 SINE B2 -4 212 47 1 1579 3046 181 127 14 chr1 130396874 130397458 -66797974 - Lx7 LINE L1 -857 6839 6190 1 1579 21104 22 0 0 chr1 130397461 130400559 -66794873 - L1Md_T LINE L1 0 6582 3484 1 1579 409 279 94 6 chr1 130400555 130400714 -66794718 - Lx7 LINE L1 -1489 6207 6035 1 1579 1275 171 94 82 chr1 130400905 130401223 -66794209 - RLTR41 LTR ERV1 -63 383 62 1 1579 319 302 8 16 chr1 130401885 130402006 -66793426 - RLTR4_MM-int LTR ERV1 -1991 5610 5491 1 1579 518 220 30 15 chr1 130402148 130402282 -66793150 - RLTR41 LTR ERV1 -10 436 301 1 1579 873 257 88 97 chr1 130402406 130402606 -66792826 + MTE2a LTR MaLR 1 190 -189 1 1579 346 67 67 0 chr1 130402606 130402681 -66792751 + (CAAG)n Simple_repeat Simple_repeat 1 80 0 1 1579 873 257 88 97 chr1 130402681 130402842 -66792590 + MTE2a LTR MaLR 191 359 -20 1 1579 394 236 15 68 chr1 130402886 130403018 -66792414 - RSINE1 SINE B4 -38 127 3 1 1579 467 306 26 77 chr1 130403128 130403401 -66792031 - B4A SINE B4 -3 289 31 1 1579 202 273 0 0 chr1 130403951 130404006 -66791426 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1579 501 247 81 103 chr1 130404015 130404045 -66791387 - B4 SINE B4 0 292 274 1 1579 1248 96 0 0 chr1 130404045 130404391 -66791041 + (TG)n Simple_repeat Simple_repeat 1 346 0 1 1579 501 247 81 103 chr1 130404391 130404541 -66790891 - B4 SINE B4 -19 273 112 1 1579 835 302 70 7 chr1 130404695 130404965 -66790467 + B4A SINE B4 5 291 -1 1 1579 488 272 46 77 chr1 130406047 130406262 -66789170 + RSINE1 SINE B4 3 163 -2 1 1579 602 282 60 6 chr1 130406315 130406497 -66788935 + B4 SINE B4 84 275 -17 1 1579 225 267 0 32 chr1 130406514 130406576 -66788856 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 1 1579 500 255 38 139 chr1 130407055 130407135 -66788297 + B4A SINE B4 2 78 -214 1 1579 2919 65 34 3 chr1 130407135 130407519 -66787913 - MTA_Mm LTR MaLR 0 396 1 1 1579 500 255 38 139 chr1 130407519 130407543 -66787889 + B4A SINE B4 79 82 -210 1 1579 737 187 8 0 chr1 130407543 130407677 -66787755 + B1_Mus1 SINE Alu 3 137 -11 1 1579 361 248 22 36 chr1 130407711 130407849 -66787583 + B4A SINE B4 106 241 -51 1 1579 351 0 0 0 chr1 130408453 130408492 -66786940 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1579 1332 142 94 0 chr1 130408526 130408759 -66786673 + ORR1B2 LTR MaLR 1 255 -112 1 1579 716 119 93 0 chr1 130408767 130408885 -66786547 - B2_Mm2 SINE B2 -66 129 1 1 1579 653 157 33 8 chr1 130408885 130408944 -66786488 + ORR1B2 LTR MaLR 240 298 -69 1 1579 387 0 0 0 chr1 130408944 130408987 -66786445 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1579 653 157 33 8 chr1 130408987 130409044 -66786388 + ORR1B2 LTR MaLR 299 359 -8 1 1579 243 316 97 0 chr1 130409053 130409167 -66786265 - Lx8 LINE L1 -179 7294 7170 1 1579 241 366 25 51 chr1 130409200 130409318 -66786114 - MLT1L LTR MaLR -334 276 162 1 1579 804 215 35 45 chr1 130409462 130409662 -66785770 - B3A SINE B2 0 198 1 1 1579 524 321 0 0 chr1 130409680 130409820 -66785612 - ID_B1 SINE B4 0 224 85 1 1579 749 268 32 46 chr1 130409896 130410045 -66785387 + L1MC3 LINE L1 7500 7646 -139 1 1579 814 226 43 19 chr1 130410045 130410253 -66785179 + ID_B1 SINE B4 1 213 -11 1 1579 312 27 0 0 chr1 130410253 130410290 -66785142 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 1 1579 749 268 32 46 chr1 130410290 130410421 -66785011 + L1MC3 LINE L1 7647 7776 -9 1 1579 439 381 69 42 chr1 130410458 130410790 -66784642 - LTR16A LTR ERVL -110 341 1 1 1579 22 35 0 0 chr1 130411204 130411233 -66784199 + AT_rich Low_complexity Low_complexity 1 29 0 1 1579 430 141 31 0 chr1 130411241 130411305 -66784127 - ID4_ SINE ID -16 67 2 1 1579 519 184 29 10 chr1 130411691 130411795 -66783637 - U6 snRNA snRNA 0 107 2 1 1579 1242 41 7 0 chr1 130411925 130412071 -66783361 + B1_Mm SINE Alu 1 147 0 1 1579 651 277 16 58 chr1 130412288 130412476 -66782956 - B3A SINE B2 -11 187 8 1 1579 477 296 23 85 chr1 130412855 130413044 -66782388 + B3A SINE B2 22 203 -13 1 1579 227 227 0 26 chr1 130413045 130413122 -66782310 + (CATA)n Simple_repeat Simple_repeat 4 78 0 1 1579 3072 101 13 15 chr1 130413125 130413599 -66781833 - MT2B2 LTR ERVL -111 473 1 1 1579 1263 89 0 0 chr1 130413599 130413802 -66781630 + (GGAA)n Simple_repeat Simple_repeat 1 203 0 1 1579 218 270 22 0 chr1 130414485 130414574 -66780858 + CT-rich Low_complexity Low_complexity 2 92 0 1 1579 241 271 51 0 chr1 130414606 130414665 -66780767 - ID4 SINE ID -16 67 6 1 1579 390 268 40 68 chr1 130414707 130414855 -66780577 - RMER30 DNA MER1_type -45 157 14 1 1579 226 50 50 0 chr1 130415204 130415244 -66780188 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1579 530 204 78 26 chr1 130415245 130415361 -66780071 - RSINE1 SINE B4 -41 124 3 1 1579 230 262 173 27 chr1 130415701 130415811 -66779621 + Lx8 LINE L1 7164 7289 -184 1 1579 435 153 0 0 chr1 130416153 130416251 -66779181 + CT-rich Low_complexity Low_complexity 1 98 0 1 1579 558 0 0 0 chr1 130416424 130416486 -66778946 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1580 442 309 41 0 chr1 130418103 130418226 -66777206 - ID_B1 SINE B4 -91 133 6 1 1580 29 28 0 0 chr1 130418254 130418290 -66777142 + AT_rich Low_complexity Low_complexity 1 36 0 1 1580 22 0 0 0 chr1 130418627 130418649 -66776783 + AT_rich Low_complexity Low_complexity 1 22 0 1 1580 745 244 104 0 chr1 130418657 130418858 -66776574 - ID_B1 SINE B4 -2 222 1 1 1580 7795 81 17 20 chr1 130418871 130420196 -66775236 - L1_Mus4 LINE L1 0 6636 5314 1 1580 8978 101 6 8 chr1 130420195 130422254 -66773178 - L1VL4 LINE L1 -1469 2090 29 1 1580 2205 158 10 30 chr1 130422476 130422875 -66772557 + ORR1B1 LTR MaLR 1 391 -3 1 1580 3029 186 75 60 chr1 130422877 130424625 -66770807 + ORR1B1-int LTR MaLR 1 1735 -57 1 1580 2249 141 10 10 chr1 130424625 130425011 -66770421 + ORR1B1 LTR MaLR 6 391 -3 1 1580 1165 283 4 4 chr1 130425011 130425262 -66770170 + B4A SINE B4 22 272 -20 1 1580 234 286 0 16 chr1 130425302 130425366 -66770066 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 1580 671 270 20 126 chr1 130425848 130426094 -66769338 - ID_B1 SINE B4 0 224 5 1 1580 365 156 13 0 chr1 130426111 130426188 -66769244 + CT-rich Low_complexity Low_complexity 1 78 0 1 1580 285 264 65 11 chr1 130426204 130426296 -66769136 - PB1D10 SINE Alu -17 100 4 1 1580 717 223 7 0 chr1 130427143 130427282 -66768150 - ID_B1 SINE B4 -9 215 76 1 1580 389 56 19 0 chr1 130427286 130427340 -66768092 - ORR1A3 LTR MaLR 0 394 340 1 1580 390 42 0 0 chr1 130427353 130427401 -66768031 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1580 1103 71 0 0 chr1 130427404 130427558 -66767874 - B2_Mm2 SINE B2 -41 154 1 1 1580 2001 74 0 0 chr1 130427558 130427841 -66767591 - ORR1A3 LTR MaLR -42 284 2 1 1580 377 321 0 0 chr1 130427841 130427944 -66767488 - ID_B1 SINE B4 -121 103 1 1 1580 230 229 0 16 chr1 130427946 130428008 -66767424 - MLT1A1 LTR MaLR -40 368 308 1 1580 563 268 109 0 chr1 130428131 130428269 -66767163 - RSINE1 SINE B4 -9 156 4 1 1580 724 145 45 40 chr1 130428378 130428527 -66766905 + B3 SINE B2 1 140 -53 1 1580 414 295 39 0 chr1 130428801 130428930 -66766502 + Charlie12 DNA MER1_type 11 144 -2729 1 1580 646 278 58 54 chr1 130428949 130429189 -66766243 - B4 SINE B4 -4 288 48 1 1580 234 0 0 0 chr1 130429193 130429219 -66766213 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1580 555 16 0 0 chr1 130429219 130429282 -66766150 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1580 1136 239 5 0 chr1 130429940 130430158 -66765274 + ID_B1 SINE B4 6 224 0 1 1580 624 14 0 0 chr1 130430197 130430270 -66765162 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1580 2482 99 2 46 chr1 130430270 130430663 -66764769 + RLTR14 LTR ERV1 2 377 -5 1 1580 621 40 0 0 chr1 130430666 130430742 -66764690 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 1 1580 230 226 0 0 chr1 130431022 130431075 -66764357 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1580 216 67 0 0 chr1 130431177 130431207 -66764225 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1580 456 234 88 8 chr1 130431584 130431709 -66763723 - ID_B1 SINE B4 -8 216 82 1 1580 519 167 21 10 chr1 130431727 130431824 -66763608 - PB1D9 SINE Alu -1 119 22 1 1580 468 251 157 64 chr1 130431824 130431931 -66763501 - ID_B1 SINE B4 0 224 2 1 1580 366 277 26 43 chr1 130433091 130433208 -66762224 - B4A SINE B4 -176 116 2 1 1580 459 159 167 198 chr1 130433422 130433649 -66761783 - Lx8 LINE L1 -334 7139 6920 1 1580 618 235 15 0 chr1 130433661 130433797 -66761635 - ID_B1 SINE B4 -3 221 84 1 1580 246 274 0 0 chr1 130434244 130434306 -66761126 - B4A SINE B4 -4 288 227 1 1580 369 260 30 52 chr1 130434300 130434434 -66760998 + B4 SINE B4 65 195 -97 1 1580 566 156 0 20 chr1 130434684 130434782 -66760650 - B1_Mm SINE Alu -7 140 45 1 1580 279 133 0 0 chr1 130434782 130434827 -66760605 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1580 604 96 39 0 chr1 130434856 130434960 -66760472 + (CATA)n Simple_repeat Simple_repeat 3 110 0 1 1580 243 0 0 0 chr1 130435451 130435478 -66759954 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1580 315 241 51 0 chr1 130435624 130435703 -66759729 - B4A SINE B4 -208 84 2 1 1580 574 265 20 0 chr1 130435730 130435877 -66759555 + ID_B1 SINE B4 3 152 -72 1 1580 1581 266 62 31 chr1 130436638 130437158 -66758274 - Lx8 LINE L1 -2 7471 6936 1 1580 671 257 78 61 chr1 130437187 130437481 -66757951 - Lx8 LINE L1 -1117 6356 6058 1 1580 285 298 27 71 chr1 130437523 130437635 -66757797 - PB1D10 SINE Alu -1 116 10 1 1580 793 220 47 2 chr1 130437682 130437898 -66757534 + B4A SINE B4 1 223 -69 1 1580 202 217 0 0 chr1 130437923 130437969 -66757463 + (CAA)n Simple_repeat Simple_repeat 1 46 0 1 1580 258 309 0 0 chr1 130437972 130438040 -66757392 + B4A SINE B4 224 291 -1 1 1580 654 259 134 52 chr1 130438461 130438730 -66756702 - B4 SINE B4 0 292 2 1 1580 693 275 80 28 chr1 130439094 130439307 -66756125 + ID_B1 SINE B4 1 224 0 1 1580 357 331 20 20 chr1 130439324 130439475 -66755957 + MLT1A LTR MaLR 174 324 -50 1 1580 677 23 11 0 chr1 130439771 130439858 -66755574 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1580 433 256 86 0 chr1 130440005 130440122 -66755310 - ID_B1 SINE B4 -2 222 96 1 1580 1253 85 131 0 chr1 130440428 130440627 -66754805 + URR1B DNA MER1_type 1 225 0 1 1580 593 251 160 0 chr1 130441126 130441313 -66754119 - ID_B1 SINE B4 -2 222 6 1 1580 640 265 71 57 chr1 130441337 130441617 -66753815 + B4 SINE B4 2 285 -7 1 1580 210 106 20 60 chr1 130441661 130441711 -66753721 + GA-rich Low_complexity Low_complexity 2 49 0 1 1580 236 104 42 0 chr1 130441722 130441770 -66753662 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 1 1580 560 62 25 0 chr1 130442037 130442117 -66753315 + (GAAAA)n Simple_repeat Simple_repeat 3 84 0 1 1580 605 243 14 0 chr1 130442994 130443134 -66752298 - B3A SINE B2 -56 142 1 1 1580 392 275 29 14 chr1 130443134 130443259 -66752173 - B4A SINE B4 -59 233 107 1 1580 766 60 17 0 chr1 130443259 130443376 -66752056 + (CA)n Simple_repeat Simple_repeat 1 119 0 1 1580 239 312 0 12 chr1 130443378 130443459 -66751973 - B3A SINE B2 -115 83 4 1 1580 833 235 34 20 chr1 130444092 130444296 -66751136 + ID_B1 SINE B4 2 208 -16 1 1580 402 314 91 105 chr1 130444336 130444546 -66750886 + B3 SINE B2 6 212 -4 1 1580 594 302 68 41 chr1 130444643 130444944 -66750488 + B4 SINE B4 1 280 -12 1 1580 311 281 68 30 chr1 130445102 130445234 -66750198 + MamRep1879 DNA hAT? 8 144 -72 1 1580 306 0 0 0 chr1 130445344 130445378 -66750054 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1580 727 245 95 5 chr1 130445389 130445610 -66749822 + L1MB2 LINE L1 5903 6143 -28 1 1580 243 0 0 0 chr1 130445996 130446023 -66749409 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1580 576 93 0 0 chr1 130446023 130446120 -66749312 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1580 704 251 64 23 chr1 130446134 130446354 -66749078 - B4 SINE B4 -62 230 2 1 1580 573 323 6 6 chr1 130446746 130446905 -66748527 - RSINE1 SINE B4 -1 164 6 1 1580 417 285 144 8 chr1 130447008 130447181 -66748251 + MTD LTR MaLR 200 376 -24 1 1580 312 169 0 48 chr1 130447429 130447491 -66747941 + ID_B1 SINE B4 135 193 -31 1 1580 524 56 14 0 chr1 130447494 130447566 -66747866 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 1 1580 562 213 18 9 chr1 130447592 130447701 -66747731 + RSINE1 SINE B4 11 120 -45 1 1580 537 16 0 0 chr1 130447707 130447769 -66747663 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1580 529 319 18 12 chr1 130448108 130448279 -66747153 - ID_B1 SINE B4 0 224 53 1 1580 696 124 0 0 chr1 130448947 130449084 -66746348 + (CA)n Simple_repeat Simple_repeat 2 138 0 1 1580 369 0 0 0 chr1 130449084 130449124 -66746308 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1580 279 293 100 35 chr1 130449361 130449531 -66745901 - MIRb SINE MIR -72 196 16 1 1580 617 285 40 0 chr1 130449584 130449735 -66745697 + ID_B1 SINE B4 1 157 -67 1 1580 747 285 41 62 chr1 130449735 130450027 -66745405 + B4A SINE B4 3 288 -4 1 1580 447 19 0 0 chr1 130450037 130450089 -66745343 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1580 21 36 0 0 chr1 130450291 130450319 -66745113 + AT_rich Low_complexity Low_complexity 1 28 0 1 1580 701 186 8 0 chr1 130450319 130450437 -66744995 - RSINE1 SINE B4 -43 122 4 1 1580 520 261 48 65 chr1 130450674 130450842 -66744590 + B4 SINE B4 5 169 -123 1 1580 789 147 0 0 chr1 130450867 130451023 -66744409 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 1580 180 0 0 0 chr1 130451725 130451745 -66743687 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1580 882 177 7 0 chr1 130451746 130451893 -66743539 - B1_Mur2 SINE Alu 0 149 2 1 1580 676 276 32 5 chr1 130451921 130452107 -66743325 - B3A SINE B2 -7 191 1 1 1580 621 119 0 0 chr1 130452419 130452520 -66742912 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1580 557 362 0 0 chr1 130452586 130452738 -66742694 - RSINE1 SINE B4 -12 153 2 1 1580 642 269 29 63 chr1 130452738 130452973 -66742459 - B4A SINE B4 -62 230 4 1 1580 318 289 101 196 chr1 130453251 130453355 -66742077 + RSINE1 SINE B4 1 91 -74 1 1580 947 154 0 7 chr1 130453355 130453505 -66741927 - B1_Mur2 SINE Alu 0 149 1 1 1580 318 289 101 196 chr1 130453505 130453568 -66741864 + RSINE1 SINE B4 92 152 -13 1 1580 243 258 99 40 chr1 130453630 130453731 -66741701 + MIR3 SINE MIR 74 180 -28 1 1580 634 236 208 19 chr1 130454386 130454598 -66740834 - RMER15 LTR ERVL 0 575 324 1 1580 186 43 0 0 chr1 130455263 130455286 -66740146 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1580 1373 81 16 5 chr1 130455296 130455482 -66739950 - B2_Mm2 SINE B2 -7 188 1 1 1580 2513 224 101 21 chr1 130455590 130456113 -66739319 - Lx6 LINE L1 -35 7425 6862 1 1580 1139 104 6 0 chr1 130456113 130456286 -66739146 + (TCCC)n Simple_repeat Simple_repeat 4 177 0 1 1580 1021 202 186 25 chr1 130456286 130456344 -66739088 - Lx6 LINE L1 -835 6861 6796 1 1580 21 0 0 0 chr1 130456613 130456634 -66738798 + AT_rich Low_complexity Low_complexity 1 21 0 1 1580 250 246 77 115 chr1 130456682 130456838 -66738594 + MIRb SINE MIR 64 213 -55 1 1580 1086 51 0 0 chr1 130457272 130457409 -66738023 + (TC)n Simple_repeat Simple_repeat 2 138 0 1 1580 318 194 32 0 chr1 130457454 130457516 -66737916 - RSINE1 SINE B4 -62 103 40 1 1580 780 279 77 8 chr1 130457500 130457735 -66737697 - B4A SINE B4 -30 262 12 1 1580 251 335 155 15 chr1 130458724 130458921 -66736511 + MLT1H LTR MaLR 250 476 -73 1 1580 443 250 93 29 chr1 130458921 130459061 -66736371 + B1_Mur1 SINE Alu 1 149 0 1 1580 818 232 58 39 chr1 130459097 130459303 -66736129 + ID_B1 SINE B4 3 212 -12 1 1580 216 158 0 0 chr1 130459306 130459344 -66736088 + GA-rich Low_complexity Low_complexity 3 40 0 1 1580 475 245 130 20 chr1 130459653 130459799 -66735633 + B4 SINE B4 3 164 -128 1 1580 303 28 0 0 chr1 130459858 130459894 -66735538 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1580 279 0 0 0 chr1 130460123 130460154 -66735278 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1580 234 306 101 101 chr1 130460213 130460391 -66735041 - B4 SINE B4 -14 278 101 1 1580 2145 170 53 3 chr1 130460421 130460798 -66734634 - MTD LTR MaLR -8 411 16 1 1580 453 314 7 28 chr1 130460971 130461112 -66734320 + ID_B1 SINE B4 82 219 -5 1 1580 529 264 24 8 chr1 130460990 130461116 -66734316 + B1F SINE Alu 20 147 -2 1 1580 264 308 91 55 chr1 130460994 130461159 -66734273 - YREP_Mm Unknown Unknown -1519 293 123 1 1580 840 104 0 0 chr1 130461260 130461385 -66734047 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 1 1580 568 250 6 10 chr1 130461645 130461961 -66733471 + (TG)n Simple_repeat Simple_repeat 1 314 0 1 1580 1114 244 31 35 chr1 130461971 130462260 -66733172 - B4 SINE B4 0 292 5 1 1580 624 269 15 0 chr1 130462631 130462761 -66732671 + ID_B1 SINE B4 9 140 -84 1 1580 984 237 13 126 chr1 130463353 130463584 -66731848 - B4 SINE B4 -10 282 81 1 1580 837 243 0 55 chr1 130463584 130463784 -66731648 - B3A SINE B2 -9 189 1 1 1580 984 237 13 126 chr1 130463784 130463870 -66731562 - B4 SINE B4 -212 80 1 1 1580 713 214 179 0 chr1 130464859 130465032 -66730400 + B3 SINE B2 1 204 -12 1 1580 257 83 42 0 chr1 130465039 130465087 -66730345 + (TCTCTG)n Simple_repeat Simple_repeat 4 53 0 1 1580 835 161 14 20 chr1 130465094 130465240 -66730192 - B1_Mur4 SINE Alu -5 145 1 1 1580 609 264 39 0 chr1 130465249 130465378 -66730054 - B3 SINE B2 -82 134 1 1 1580 273 196 0 0 chr1 130465379 130465425 -66730007 + MTE2a LTR MaLR 4 49 -330 1 1580 468 0 0 0 chr1 130465725 130465777 -66729655 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1580 261 0 0 0 chr1 130465777 130465805 -66729627 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1580 272 222 127 0 chr1 130465805 130465868 -66729564 - ID4 SINE ID -11 72 2 1 1580 426 39 0 0 chr1 130465929 130465981 -66729451 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1580 609 298 18 24 chr1 130466019 130466184 -66729248 + ID_B1 SINE B4 19 182 -42 1 1580 771 127 35 0 chr1 130466193 130466366 -66729066 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1580 683 245 59 20 chr1 130466434 130466638 -66728794 - B3 SINE B2 0 216 5 1 1580 1462 264 108 7 chr1 130467256 130467710 -66727722 - Lx8 LINE L1 -4 7469 6970 1 1580 421 335 69 10 chr1 130467716 130467918 -66727514 - ID_B1 SINE B4 -9 215 2 1 1580 215 191 15 0 chr1 130468202 130468270 -66727162 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1580 515 196 23 0 chr1 130468288 130468461 -66726971 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1580 711 151 0 0 chr1 130468836 130468942 -66726490 + B3 SINE B2 15 120 -96 1 1580 602 272 125 5 chr1 130468994 130469186 -66726246 - ID_B1 SINE B4 -9 215 1 1 1580 431 258 5 82 chr1 130469961 130469996 -66725436 - B3A SINE B2 -17 181 3 1 1580 540 269 19 19 chr1 130469996 130470155 -66725277 - B4A SINE B4 -131 161 3 1 1580 225 211 0 0 chr1 130470377 130470429 -66725003 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1580 411 113 0 0 chr1 130470549 130470611 -66724821 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 1 1580 382 280 37 0 chr1 130470868 130470975 -66724457 - B4 SINE B4 -1 291 181 1 1580 228 321 96 26 chr1 130470933 130471048 -66724384 - PB1 SINE Alu -4 123 1 1 1580 266 0 29 0 chr1 130471051 130471085 -66724347 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1580 454 267 10 15 chr1 130471118 130471267 -66724165 - B4 SINE B4 -144 148 2 1 1580 910 242 120 23 chr1 130472148 130472414 -66723018 + B4A SINE B4 1 292 0 1 1580 678 255 65 109 chr1 130472547 130472696 -66722736 + ID_B1 SINE B4 1 164 -60 1 1580 2090 191 34 17 chr1 130472696 130473106 -66722326 - MTC LTR MaLR 0 421 5 1 1580 678 255 65 109 chr1 130473106 130473185 -66722247 + ID_B1 SINE B4 165 219 -5 1 1580 804 204 0 34 chr1 130473192 130473339 -66722093 - B1_Mus2 SINE Alu 0 147 6 1 1580 366 212 47 0 chr1 130473455 130473540 -66721892 + RSINE1 SINE B4 77 165 0 1 1580 603 197 23 30 chr1 130473762 130473893 -66721539 - B3A SINE B2 -68 130 1 1 1580 270 311 26 19 chr1 130474090 130474244 -66721188 - L1M5 LINE L1 -642 5482 5328 1 1580 894 88 0 0 chr1 130474249 130474374 -66721058 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 1580 1206 238 19 83 chr1 130474375 130474687 -66720745 - B4A SINE B4 0 292 1 1 1580 393 236 0 0 chr1 130475509 130475636 -66719796 + (TG)n Simple_repeat Simple_repeat 1 127 0 1 1580 915 249 93 50 chr1 130475688 130475972 -66719460 - B4 SINE B4 0 292 9 1 1580 1061 289 44 4 chr1 130476263 130476537 -66718895 - B4A SINE B4 -6 286 2 1 1580 517 314 28 101 chr1 130476537 130476721 -66718711 + Cheshire DNA MER1_type 93 258 -2162 1 1580 946 289 43 11 chr1 130477235 130477511 -66717921 - MER2 DNA MER2_type -1 344 60 1 1580 439 285 169 0 chr1 130477541 130477671 -66717761 - RSINE1 SINE B4 -10 155 4 1 1580 1508 210 90 25 chr1 130477810 130478166 -66717266 - MTEa LTR MaLR 0 379 1 1 1580 934 236 37 0 chr1 130478611 130478802 -66716630 + B3 SINE B2 1 198 -18 1 1580 432 0 0 0 chr1 130478802 130478850 -66716582 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1580 263 219 135 14 chr1 130478932 130479006 -66716426 - PB1D7 SINE Alu 0 120 38 1 1580 306 334 58 58 chr1 130479098 130479274 -66716158 + MIR SINE MIR 20 195 -73 1 1580 474 282 182 0 chr1 130479370 130479551 -66715881 + ID_B1 SINE B4 3 216 -8 1 1580 333 0 0 0 chr1 130479558 130479595 -66715837 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1580 419 131 0 20 chr1 130479595 130479696 -66715736 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 1 1580 411 21 0 0 chr1 130479702 130479750 -66715682 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1580 675 303 111 24 chr1 130480487 130480804 -66714628 - MLT1A0 LTR MaLR -21 369 11 1 1580 731 238 6 6 chr1 130480849 130480991 -66714441 + RSINE1 SINE B4 2 143 -22 1 1580 423 0 0 0 chr1 130480991 130481038 -66714394 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1580 731 238 6 6 chr1 130481038 130481056 -66714376 + RSINE1 SINE B4 144 161 -4 1 1580 210 271 0 0 chr1 130481146 130481242 -66714190 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1580 683 238 6 72 chr1 130481242 130481379 -66714053 - B4 SINE B4 0 292 167 1 1580 2323 82 69 0 chr1 130481379 130481685 -66713747 + ORR1A2 LTR MaLR 1 327 0 1 1580 683 238 6 72 chr1 130481685 130481728 -66713704 - B4 SINE B4 -126 166 124 1 1580 408 330 84 31 chr1 130481773 130481964 -66713468 - MER20 DNA MER1_type -5 214 14 1 1580 216 0 0 0 chr1 130482781 130482805 -66712627 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1580 184 30 29 29 chr1 130483677 130483711 -66711721 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1580 1085 228 25 76 chr1 130484349 130484624 -66710808 + B4 SINE B4 1 261 -31 1 1580 199 68 91 0 chr1 130484934 130484978 -66710454 + A-rich Low_complexity Low_complexity 6 53 0 1 1580 243 0 0 0 chr1 130485015 130485042 -66710390 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 1 1580 203 0 37 0 chr1 130485377 130485404 -66710028 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1580 181 140 0 34 chr1 130486854 130486913 -66708519 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 1 1580 1176 81 0 0 chr1 130487023 130487184 -66708248 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 1 1580 284 0 0 27 chr1 130490120 130490157 -66705275 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1580 901 265 18 9 chr1 130490157 130490366 -66705066 - ID_B1 SINE B4 -12 212 2 1 1580 351 0 0 0 chr1 130491080 130491119 -66704313 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1580 354 356 66 40 chr1 130491163 130491464 -66703968 + L1ME4a LINE L1 5616 5924 -200 1 1580 243 278 0 27 chr1 130491482 130491556 -66703876 + ID SINE ID 2 73 -151 1 1580 264 325 13 13 chr1 130491651 130491729 -66703703 - ID4_ SINE ID -2 81 4 1 1580 235 235 0 93 chr1 130491895 130491970 -66703462 - MIRb SINE MIR -199 69 2 1 1580 506 100 22 0 chr1 130492609 130492699 -66702733 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 1 1580 207 88 0 0 chr1 130493102 130493136 -66702296 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1580 288 0 0 0 chr1 130493137 130493169 -66702263 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1580 495 0 0 0 chr1 130493169 130493223 -66702209 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1580 242 304 0 0 chr1 130494113 130494169 -66701263 - B4 SINE B4 0 292 237 1 1580 569 267 36 19 chr1 130494196 130494363 -66701069 - B4 SINE B4 -118 174 3 1 1580 229 276 35 0 chr1 130494453 130494511 -66700921 + ID4 SINE ID 11 70 -13 1 1580 225 0 0 0 chr1 130494516 130494541 -66700891 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1580 303 93 0 0 chr1 130495226 130495269 -66700163 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1580 596 240 110 83 chr1 130495269 130495479 -66699953 - ID_B1 SINE B4 -5 219 1 1 1580 327 343 28 14 chr1 130495552 130495694 -66699738 + MIR SINE MIR 116 259 -3 1 1580 717 278 24 14 chr1 130496611 130496819 -66698613 + ID_B1 SINE B4 2 211 -13 1 1580 680 261 170 12 chr1 130497396 130497637 -66697795 + B4 SINE B4 2 280 -12 1 1580 287 197 61 0 chr1 130497639 130497705 -66697727 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1 1580 242 246 33 0 chr1 130498269 130498330 -66697102 + CT-rich Low_complexity Low_complexity 2 64 0 1 1580 455 170 21 0 chr1 130498343 130498437 -66696995 + CT-rich Low_complexity Low_complexity 1 96 0 1 1580 1021 118 0 12 chr1 130498462 130498633 -66696799 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 1 1580 241 276 36 95 chr1 130498633 130498717 -66696715 - ID4 SINE ID -4 79 1 1 1580 766 250 30 0 chr1 130499042 130499118 -66696314 + ID SINE ID 1 81 -143 1 1580 345 286 0 79 chr1 130499118 130499232 -66696200 + PB1D10 SINE Alu 1 105 -12 1 1580 350 42 21 0 chr1 130499598 130499646 -66695786 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1580 745 289 49 38 chr1 130499681 130499944 -66695488 - B4A SINE B4 -23 269 4 1 1580 536 231 157 0 chr1 130500001 130500135 -66695297 - ID_B1 SINE B4 -65 159 5 1 1580 589 107 11 68 chr1 130500680 130500870 -66694562 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1580 266 312 12 55 chr1 130500907 130501033 -66694399 + CT-rich Low_complexity Low_complexity 38 158 0 3 1580 754 262 62 5 chr1 130501033 130501244 -66694188 - ID_B1 SINE B4 0 224 2 4 1580 266 312 12 55 chr1 130501244 130501280 -66694152 + polypyrimidine Low_complexity Low_complexity 3 37 0 5 1580 192 200 0 0 chr1 130501284 130501324 -66694108 + CT-rich Low_complexity Low_complexity 4 43 0 6 1580 608 298 31 62 chr1 130502044 130502205 -66693227 + B3A SINE B2 1 156 -42 7 1580 303 28 0 0 chr1 130502210 130502246 -66693186 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1580 783 0 0 0 chr1 130502689 130502776 -66692656 + (GAA)n Simple_repeat Simple_repeat 1 87 0 9 1580 907 232 77 26 chr1 130503522 130503756 -66691676 + Lx8 LINE L1 7169 7414 -59 1 1580 517 177 9 9 chr1 130503756 130503870 -66691562 + GA-rich Low_complexity Low_complexity 1 114 0 1 1580 26 50 0 0 chr1 130503946 130503986 -66691446 + AT_rich Low_complexity Low_complexity 1 40 0 1 1580 272 340 128 28 chr1 130504014 130504134 -66691298 + Charlie23a DNA MER1_type 81 223 -116 1 1580 189 0 0 0 chr1 130504134 130504155 -66691277 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1580 272 340 128 28 chr1 130504155 130504252 -66691180 + Charlie23a DNA MER1_type 224 320 -19 1 1580 180 319 116 0 chr1 130504795 130504864 -66690568 - MIRb SINE MIR -81 187 111 1 1580 283 200 73 85 chr1 130505119 130505201 -66690231 + MIRc SINE MIR 96 176 -92 1 1580 1138 252 11 25 chr1 130505436 130505717 -66689715 - B4 SINE B4 -14 278 2 1 1580 514 182 34 26 chr1 130506108 130506458 -66688974 + (TG)n Simple_repeat Simple_repeat 1 353 0 1 1580 423 151 45 17 chr1 130506471 130506767 -66688665 + (TG)n Simple_repeat Simple_repeat 1 304 0 1 1580 679 264 35 35 chr1 130506767 130507057 -66688375 - B4A SINE B4 0 292 3 1 1580 519 222 125 25 chr1 130507062 130507182 -66688250 - B4A SINE B4 -73 219 88 2 1580 294 217 21 21 chr1 130507182 130507323 -66688109 + (TTTA)n Simple_repeat Simple_repeat 1 141 0 2 1580 287 345 69 0 chr1 130507337 130507424 -66688008 - B3A SINE B2 -36 162 70 2 1580 1273 216 72 28 chr1 130507420 130507710 -66687722 - MTEb LTR MaLR -74 305 3 2 1580 504 0 0 0 chr1 130507805 130507861 -66687571 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1580 919 121 0 19 chr1 130507958 130508118 -66687314 + (TTTTC)n Simple_repeat Simple_repeat 5 161 0 2 1580 720 177 6 33 chr1 130508119 130508300 -66687132 + CT-rich Low_complexity Low_complexity 3 178 0 2 1580 626 109 0 10 chr1 130508275 130508377 -66687055 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 2 1580 369 0 0 0 chr1 130508375 130508416 -66687016 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1580 270 0 0 0 chr1 130508866 130508896 -66686536 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 2 1580 1545 35 0 0 chr1 130508896 130509129 -66686303 + (TCTCCC)n Simple_repeat Simple_repeat 1 233 0 3 1580 1266 27 0 0 chr1 130509130 130509280 -66686152 + (CCCCCT)n Simple_repeat Simple_repeat 1 150 0 3 1580 669 293 81 14 chr1 130509283 130509494 -66685938 - B4 SINE B4 -2 290 66 3 1580 353 361 65 32 chr1 130509870 130510056 -66685376 - L2b LINE L2 -5 3370 3179 3 1580 260 300 0 41 chr1 130510201 130510274 -66685158 - B4A SINE B4 0 292 223 3 1580 351 65 0 0 chr1 130510281 130510327 -66685105 + (TCC)n Simple_repeat Simple_repeat 3 48 0 3 1580 214 326 34 0 chr1 130510403 130510492 -66684940 - B4A SINE B4 -199 93 2 3 1580 1094 192 4 82 chr1 130510622 130510854 -66684578 + ID_B1 SINE B4 6 219 -5 3 1580 236 304 77 17 chr1 130511047 130511164 -66684268 + MIRc SINE MIR 50 173 -95 3 1580 189 147 0 0 chr1 130511802 130511836 -66683596 + (TCTCCC)n Simple_repeat Simple_repeat 5 38 0 3 1580 890 244 43 82 chr1 130512236 130512540 -66682892 + B4 SINE B4 1 292 0 3 1580 558 43 0 0 chr1 130512562 130512631 -66682801 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1580 228 254 57 43 chr1 130512652 130512722 -66682710 + ID4_ SINE ID 11 81 -2 4 1580 228 198 432 0 chr1 130512874 130512955 -66682477 - PB1D10 SINE Alu -1 116 1 4 1580 870 170 87 38 chr1 130513822 130514005 -66681427 + URR1A DNA MER1_type 35 226 0 4 1580 286 228 265 10 chr1 130514009 130514111 -66681321 - B1F2 SINE Alu -15 134 7 4 1580 777 292 10 5 chr1 130514680 130514873 -66680559 - ID_B1 SINE B4 -3 221 28 4 1580 760 203 7 0 chr1 130515242 130515380 -66680052 - ID_B1 SINE B4 -84 140 2 4 1580 252 0 0 0 chr1 130515489 130515517 -66679915 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1580 246 246 122 14 chr1 130515677 130515751 -66679681 - MER44B DNA MER2_type -389 161 80 4 1580 1276 192 56 30 chr1 130515749 130516018 -66679414 + ORR1D1 LTR MaLR 98 373 -1 4 1580 1339 276 21 34 chr1 130516039 130516422 -66679010 + MTE2a LTR MaLR 1 378 -1 5 1580 1684 246 106 16 chr1 130516449 130516949 -66678483 + Tigger7 DNA MER2_type 266 810 -1681 5 1580 731 235 84 0 chr1 130516941 130517120 -66678312 + ID_B1 SINE B4 8 201 -23 5 1580 771 11 0 0 chr1 130517122 130517210 -66678222 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1580 1209 94 0 0 chr1 130517210 130517660 -66677772 + (TG)n Simple_repeat Simple_repeat 1 450 0 5 1580 779 272 97 17 chr1 130517678 130517966 -66677466 + Tigger7 DNA MER2_type 793 1103 -1388 5 1580 514 284 34 54 chr1 130517964 130518113 -66677319 + ID_B1 SINE B4 79 224 0 5 1580 268 297 13 26 chr1 130518235 130518311 -66677121 + Tigger7 DNA MER2_type 2417 2491 0 5 1580 411 21 0 0 chr1 130518686 130518734 -66676698 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1580 450 0 0 0 chr1 130519149 130519199 -66676233 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1580 622 299 7 7 chr1 130519205 130519350 -66676082 - RSINE1 SINE B4 -19 146 2 5 1580 193 209 129 43 chr1 130519921 130519991 -66675441 + MIRc SINE MIR 94 169 -99 5 1580 909 266 59 31 chr1 130520575 130520831 -66674601 - B4 SINE B4 -25 267 5 6 1580 411 83 0 0 chr1 130520985 130521045 -66674387 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1580 374 274 0 40 chr1 130521056 130521155 -66674277 - B4A SINE B4 -45 247 153 6 1580 21 0 0 0 chr1 130521519 130521540 -66673892 + AT_rich Low_complexity Low_complexity 1 21 0 6 1580 624 264 0 84 chr1 130521550 130521728 -66673704 + RSINE1 SINE B4 1 163 -2 6 1580 441 54 0 0 chr1 130521750 130521806 -66673626 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1580 230 213 145 13 chr1 130521953 130522029 -66673403 - Charlie25 DNA MER1_type -261 2263 2178 6 1580 866 223 6 6 chr1 130522265 130522432 -66673000 - B3 SINE B2 -3 213 47 6 1580 252 246 0 0 chr1 130522503 130522572 -66672860 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1580 578 269 159 35 chr1 130522598 130522856 -66672576 - B4A SINE B4 0 292 3 6 1580 225 119 0 45 chr1 130522982 130523026 -66672406 - Charlie25 DNA MER1_type -880 1644 1603 6 1580 993 279 130 27 chr1 130523199 130523568 -66671864 - MTC LTR MaLR -14 407 1 7 1580 531 261 158 45 chr1 130523763 130523984 -66671448 + B4A SINE B4 2 247 -45 7 1580 324 0 0 0 chr1 130523996 130524032 -66671400 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1580 1837 218 66 3 chr1 130524058 130524421 -66671011 - MTD LTR MaLR -8 411 26 7 1580 2169 226 189 106 chr1 130524427 130524819 -66670613 - MTD-int LTR MaLR 0 1258 943 7 1580 287 25 0 24 chr1 130524819 130524860 -66670572 + (CAA)n Simple_repeat Simple_repeat 2 41 0 7 1580 2169 226 189 106 chr1 130524860 130525299 -66670133 - MTD-int LTR MaLR -316 942 359 7 1580 2778 138 45 21 chr1 130525458 130525590 -66669842 - Lx2A1 LINE L1 -2 7006 6878 7 1580 243 0 0 0 chr1 130525590 130525617 -66669815 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 7 1580 2778 138 45 21 chr1 130525617 130525950 -66669482 - Lx2A1 LINE L1 -131 6877 6531 7 1580 313 394 19 19 chr1 130525959 130526218 -66669214 - Charlie25 DNA MER1_type -1069 1455 1197 6 1580 32 0 0 0 chr1 130526226 130526258 -66669174 + AT_rich Low_complexity Low_complexity 1 32 0 7 1580 805 208 174 5 chr1 130526518 130526702 -66668730 + B3 SINE B2 2 216 0 7 1580 495 0 0 0 chr1 130526714 130526769 -66668663 + (CAAG)n Simple_repeat Simple_repeat 2 56 0 7 1580 619 217 25 0 chr1 130526770 130526890 -66668542 + ID_B1 SINE B4 1 123 -101 8 1580 2117 88 7 0 chr1 130526910 130527193 -66668239 + ORR1A2 LTR MaLR 1 285 -42 8 1580 1223 68 0 0 chr1 130527193 130527340 -66668092 + B1_Mus2 SINE Alu 1 147 0 8 1580 1878 117 58 129 chr1 130527340 130527420 -66668012 + ORR1A2 LTR MaLR 305 338 -8 8 1580 1074 286 146 48 chr1 130527436 130528086 -66667346 - Charlie25 DNA MER1_type -1481 1043 330 6 1580 625 228 0 0 chr1 130528182 130528296 -66667136 - B3A SINE B2 -84 114 1 8 1580 216 287 116 11 chr1 130528335 130528430 -66667002 - MIR3 SINE MIR -7 201 97 8 1580 502 296 57 17 chr1 130528440 130528615 -66666817 + B4A SINE B4 17 198 -94 8 1580 886 283 164 3 chr1 130528703 130529026 -66666406 + MTE2a LTR MaLR 1 375 -4 8 1580 183 184 0 0 chr1 130529338 130529376 -66666056 + A-rich Low_complexity Low_complexity 1 38 0 8 1580 312 243 92 26 chr1 130529698 130529774 -66665658 - B4 SINE B4 -128 164 84 8 1580 221 128 0 21 chr1 130529777 130529825 -66665607 + (CCA)n Simple_repeat Simple_repeat 3 49 0 8 1580 223 150 0 48 chr1 130529842 130529884 -66665548 - B4 SINE B4 -217 75 36 8 1580 242 238 90 90 chr1 130529967 130530075 -66665357 + LTR28 LTR ERV1 283 390 -630 9 1580 540 268 55 0 chr1 130530075 130530202 -66665230 + ID_B1 SINE B4 2 135 -89 9 1580 217 246 63 32 chr1 130530161 130530224 -66665208 + B1_Mus1 SINE Alu 14 78 -70 9 1580 342 0 0 0 chr1 130530303 130530341 -66665091 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1580 1046 181 0 21 chr1 130530750 130530936 -66664496 + URR1B DNA MER1_type 1 182 -43 9 1580 810 319 51 0 chr1 130531134 130531407 -66664025 + B4 SINE B4 1 287 -5 9 1580 387 0 0 0 chr1 130531464 130531507 -66663925 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1580 425 257 17 118 chr1 130531520 130531639 -66663793 - ID_B1 SINE B4 -100 124 18 9 1580 544 230 111 77 chr1 130531655 130531700 -66663732 - B3 SINE B2 -2 214 174 9 1580 477 0 0 0 chr1 130531700 130531753 -66663679 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1580 607 210 157 6 chr1 130531753 130531914 -66663518 - B3A SINE B2 -43 173 1 9 1580 219 69 0 0 chr1 130532486 130532515 -66662917 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1580 936 244 28 47 chr1 130532614 130532825 -66662607 - B4 SINE B4 -5 287 81 1 1580 1073 270 49 81 chr1 130533120 130533612 -66661820 + HAL1 LINE L1 604 1079 -1428 1 1580 317 282 35 0 chr1 130533633 130533718 -66661714 + BC1_Mm scRNA scRNA 18 105 -47 1 1580 811 239 78 5 chr1 130533832 130534025 -66661407 + ID_B1 SINE B4 2 208 -16 1 1580 590 262 35 0 chr1 130534037 130534178 -66661254 + RSINE1 SINE B4 3 148 -17 1 1580 245 339 65 26 chr1 130534277 130534507 -66660925 + HAL1 LINE L1 1180 1418 -1089 1 1580 856 272 38 49 chr1 130534827 130535094 -66660338 - B4A SINE B4 -27 265 2 1 1580 472 140 11 11 chr1 130535367 130535461 -66659971 + CT-rich Low_complexity Low_complexity 1 94 0 1 1580 344 330 11 0 chr1 130535462 130535556 -66659876 - B4 SINE B4 -105 187 93 1 1580 513 150 0 0 chr1 130535581 130535681 -66659751 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1580 389 205 39 0 chr1 130535681 130535759 -66659673 - B4 SINE B4 -211 81 1 1 1580 707 211 8 0 chr1 130535940 130536073 -66659359 + B1_Mus2 SINE Alu 5 138 -9 1 1580 201 143 0 0 chr1 130536888 130536923 -66658509 + (G)n Simple_repeat Simple_repeat 1 35 0 1 1580 201 74 0 0 chr1 130537415 130537442 -66657990 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1580 668 264 117 6 chr1 130537617 130537796 -66657636 - ID_B1 SINE B4 -23 201 3 1 1580 206 83 83 0 chr1 130537930 130537966 -66657466 + MIRc SINE MIR 106 144 -124 1 1580 508 280 22 17 chr1 130538003 130538137 -66657295 - ID_B1 SINE B4 -151 141 10 1 1580 285 98 0 0 chr1 130538277 130538318 -66657114 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1580 820 248 218 24 chr1 130538331 130538662 -66656770 - MTC LTR MaLR -17 404 10 1 1580 486 0 0 0 chr1 130539352 130539406 -66656026 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1580 831 281 38 62 chr1 130539411 130539703 -66655729 - B4 SINE B4 -2 290 6 1 1580 509 202 0 0 chr1 130540715 130540794 -66654638 + ID SINE ID 2 80 -144 1 1580 2430 66 3 16 chr1 130540898 130541221 -66654211 - ORR1A2 LTR MaLR -8 319 1 1 1580 445 331 61 92 chr1 130541260 130541456 -66653976 + B4 SINE B4 103 292 0 1 1580 1630 174 91 59 chr1 130541621 130541993 -66653439 + ORR1C2 LTR MaLR 1 384 0 1 1580 236 328 36 86 chr1 130542174 130542314 -66653118 + MIRb SINE MIR 22 154 -114 1 1580 316 253 63 0 chr1 130542482 130542561 -66652871 - ID_B1 SINE B4 0 224 141 1 1580 235 224 117 33 chr1 130542801 130542861 -66652571 + MLT1L LTR MaLR 109 173 -339 1 1580 275 16 29 114 chr1 130543000 130543070 -66652362 + A-rich Low_complexity Low_complexity 1 64 0 1 1580 303 28 0 0 chr1 130543103 130543139 -66652293 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1580 456 51 0 0 chr1 130543141 130543200 -66652232 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1580 288 270 137 38 chr1 130543200 130543331 -66652101 - B4 SINE B4 -66 226 83 1 1580 254 287 156 0 chr1 130543329 130543451 -66651981 + MLT1L LTR MaLR 457 597 -13 1 1580 254 295 171 0 chr1 130543533 130543662 -66651770 + Charlie16a DNA MER1_type 69 219 -123 1 1580 532 252 46 39 chr1 130543888 130544041 -66651391 + RSINE1 SINE B4 10 163 -2 1 1580 206 261 0 0 chr1 130544042 130544088 -66651344 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 1 1580 276 30 0 0 chr1 130544088 130544121 -66651311 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1580 563 102 11 0 chr1 130544179 130544267 -66651165 + (TCC)n Simple_repeat Simple_repeat 2 90 0 1 1580 1026 228 11 0 chr1 130544514 130544703 -66650729 + B3 SINE B2 14 204 -12 1 1580 3442 228 73 24 chr1 130544730 130545602 -66649830 - Lx9 LINE L1 -157 7487 6573 1 1580 423 295 0 0 chr1 130545605 130545700 -66649732 - ID_B1 SINE B4 -125 99 5 1 1580 1374 95 5 16 chr1 130545766 130545959 -66649473 + B2_Mm1a SINE B2 2 192 -1 1 1580 916 215 45 45 chr1 130546615 130546839 -66648593 + ID_B1 SINE B4 1 224 0 1 1580 1483 143 166 30 chr1 130547500 130547630 -66647802 - RMER17C LTR ERVK 0 410 279 1 1580 663 25 0 0 chr1 130547630 130547711 -66647721 + (TATAG)n Simple_repeat Simple_repeat 1 81 0 1 197 1483 143 166 30 chr1 130547711 130547941 -66647491 - RMER17C LTR ERVK -132 278 3 1 1581 1483 254 57 8 chr1 130547946 130548299 -66647133 - MTE2b LTR MaLR -9 370 1 1 1581 1161 62 7 0 chr1 130548419 130548565 -66646867 + B1_Mus2 SINE Alu 1 147 0 1 1581 198 0 0 0 chr1 130548565 130548587 -66646845 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1581 429 290 174 21 chr1 130548633 130548869 -66646563 + B4A SINE B4 2 273 -19 1 1581 227 103 0 25 chr1 130548938 130548978 -66646454 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1581 293 221 0 0 chr1 130549039 130549107 -66646325 - MER112 DNA MER1_type -80 181 114 1 1581 189 0 0 0 chr1 130549318 130549339 -66646093 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 1581 650 274 0 7 chr1 130550202 130550349 -66645083 + ID_B1 SINE B4 76 221 -3 1 1581 262 176 23 17 chr1 130550365 130550425 -66645007 + RMER17C LTR ERVK 1 43 -367 1 1581 186 91 0 57 chr1 130551720 130551755 -66643677 - MIR SINE MIR -123 139 107 1 1581 228 182 0 0 chr1 130552019 130552063 -66643369 + GA-rich Low_complexity Low_complexity 4 47 0 1 1581 752 246 75 10 chr1 130552072 130552273 -66643159 - B4A SINE B4 -78 214 1 1 1581 628 208 154 109 chr1 130552488 130552709 -66642723 + B4 SINE B4 2 232 -60 1 1581 510 61 0 0 chr1 130552777 130552843 -66642589 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1581 212 0 36 0 chr1 130553225 130553253 -66642179 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1581 1332 99 0 6 chr1 130553341 130553523 -66641909 + B2_Mm2 SINE B2 1 181 -14 1 1581 1196 62 0 0 chr1 130553892 130554038 -66641394 + B1_Mus2 SINE Alu 2 147 0 1 1581 198 0 0 0 chr1 130554038 130554060 -66641372 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1581 357 294 0 0 chr1 130554078 130554163 -66641269 + B3A SINE B2 6 90 -108 1 1581 24 53 0 0 chr1 130554184 130554222 -66641210 + AT_rich Low_complexity Low_complexity 1 38 0 1 1581 1753 208 84 16 chr1 130554382 130554773 -66640659 + MTD LTR MaLR 1 404 -15 1 1581 631 290 25 0 chr1 130554781 130554943 -66640489 - ID_B1 SINE B4 -53 171 6 1 1581 755 237 55 26 chr1 130554964 130555280 -66640152 - L1MB7 LINE L1 -118 6062 5725 1 1581 708 334 90 48 chr1 130555386 130555864 -66639568 + MER34A LTR ERV1 12 509 -62 1 1581 210 160 0 0 chr1 130555918 130555968 -66639464 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 1 1581 1032 209 33 5 chr1 130556054 130556265 -66639167 - ID_B1 SINE B4 -7 217 1 1 1581 321 26 0 0 chr1 130556872 130556910 -66638522 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 1581 282 254 32 16 chr1 130558060 130558184 -66637248 + GA-rich Low_complexity Low_complexity 1 126 0 1 1581 266 217 24 0 chr1 130558295 130558378 -66637054 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 1 1581 864 246 47 5 chr1 130559088 130559300 -66636132 + ID_B1 SINE B4 3 223 -1 1 1581 2117 108 3 110 chr1 130559583 130559948 -66635484 + ORR1A3 LTR MaLR 1 326 0 1 1581 890 239 33 5 chr1 130560203 130560417 -66635015 + ID_B1 SINE B4 3 222 -2 1 1581 25 31 0 0 chr1 130560652 130560684 -66634748 + AT_rich Low_complexity Low_complexity 1 32 0 1 1581 472 331 108 63 chr1 130560723 130560991 -66634441 - B4A SINE B4 -11 281 2 1 1581 557 263 17 17 chr1 130561047 130561163 -66634269 - RSINE1 SINE B4 -48 117 2 1 1581 389 202 12 23 chr1 130561992 130562078 -66633354 + B4 SINE B4 2 86 -206 1 1581 225 254 127 0 chr1 130562177 130562240 -66633192 + RSINE1 SINE B4 93 163 -2 1 1581 599 39 0 13 chr1 130562481 130562560 -66632872 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1581 341 309 62 0 chr1 130562670 130562767 -66632665 + RSINE1 SINE B4 56 158 -7 1 1581 951 202 26 5 chr1 130562873 130562908 -66632524 - B3A SINE B2 -5 193 155 1 1581 578 71 0 12 chr1 130562908 130562993 -66632439 + (TATG)n Simple_repeat Simple_repeat 4 87 0 1 1581 951 202 26 5 chr1 130562993 130563146 -66632286 - B3A SINE B2 -44 154 2 1 1581 443 330 136 63 chr1 130563350 130563667 -66631765 - HAL1 LINE L1 -373 2134 1795 1 1581 281 253 260 26 chr1 130563701 130563855 -66631577 - MLT1A0 LTR MaLR -11 354 165 1 1581 506 325 24 41 chr1 130564254 130564549 -66630883 - B4A SINE B4 -2 290 1 1 1581 512 266 43 0 chr1 130564749 130564888 -66630544 - MIR SINE MIR 0 262 118 1 1581 1040 238 89 125 chr1 130564945 130565164 -66630268 - MTE2b LTR MaLR 0 379 177 1 1581 585 251 109 41 chr1 130565164 130565430 -66630002 - B4A SINE B4 -8 284 1 1 1581 1040 238 89 125 chr1 130565430 130565603 -66629829 - MTE2b LTR MaLR -203 176 1 1 1581 245 267 11 65 chr1 130566369 130566461 -66628971 - MIRm SINE MIR -102 174 88 1 1581 675 265 42 26 chr1 130566844 130567034 -66628398 + ID_B1 SINE B4 1 193 -31 1 1581 259 308 0 25 chr1 130568537 130568617 -66626815 - MTEb LTR MaLR -15 364 287 1 1581 250 87 43 0 chr1 130568791 130568837 -66626595 + (GGGAGA)n Simple_repeat Simple_repeat 5 52 0 1 1581 645 278 33 0 chr1 130569305 130569385 -66626047 + B4 SINE B4 7 91 -201 1 1581 215 310 106 12 chr1 130569385 130569470 -66625962 + PB1D7 SINE Alu 2 94 -26 1 1581 418 271 0 0 chr1 130569637 130569722 -66625710 + B4 SINE B4 168 252 -40 1 1581 432 181 0 0 chr1 130569739 130569822 -66625610 + CT-rich Low_complexity Low_complexity 4 86 0 1 1581 1067 242 39 68 chr1 130569970 130570249 -66625183 - B4 SINE B4 0 292 22 1 1581 836 252 74 0 chr1 130570845 130571047 -66624385 - ID_B1 SINE B4 -6 218 2 1 1581 579 321 107 53 chr1 130571141 130571460 -66623972 - Lx8 LINE L1 -4 7469 7134 1 1581 316 227 53 0 chr1 130571465 130571540 -66623892 - MLT1A0 LTR MaLR -284 81 3 1 1581 928 188 61 26 chr1 130571646 130571875 -66623557 + RMER10A LTR ERVL 206 442 0 2 1581 598 246 45 15 chr1 130571875 130572007 -66623425 + MTEa LTR MaLR 244 379 0 2 1581 263 249 60 34 chr1 130572057 130572159 -66623273 - MLT1A0 LTR MaLR -234 131 33 2 1581 530 295 103 77 chr1 130572551 130572617 -66622815 - B4 SINE B4 -11 281 216 2 1581 714 12 0 0 chr1 130572617 130572700 -66622732 + (CCTA)n Simple_repeat Simple_repeat 1 83 0 2 1581 530 295 103 77 chr1 130572700 130572905 -66622527 - B4 SINE B4 -77 215 4 2 1581 444 147 0 0 chr1 130572934 130573009 -66622423 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 2 1581 311 365 10 0 chr1 130573020 130573116 -66622316 - B1F2 SINE Alu -23 126 30 2 1581 1125 96 6 11 chr1 130573177 130573357 -66622075 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2 1581 755 50 10 0 chr1 130573369 130573469 -66621963 + (TTTC)n Simple_repeat Simple_repeat 3 103 0 2 1581 666 258 26 0 chr1 130573482 130573637 -66621795 - RSINE1 SINE B4 0 165 7 2 1581 2268 145 42 3 chr1 130573639 130573992 -66621440 - ORR1B2 LTR MaLR 0 367 1 2 1581 231 309 143 59 chr1 130574309 130574386 -66621046 + B4A SINE B4 1 220 -72 2 1581 462 248 135 8 chr1 130574386 130574512 -66620920 + B1F SINE Alu 1 142 -7 2 1581 293 217 29 14 chr1 130574549 130574619 -66620813 + ID4 SINE ID 2 72 -11 2 1581 252 297 0 0 chr1 130574655 130574719 -66620713 + MER117 DNA MER1_type 99 162 -35 2 1581 824 275 35 42 chr1 130574844 130575132 -66620300 - B4A SINE B4 -2 290 5 2 1581 599 207 154 63 chr1 130575165 130575340 -66620092 - B3A SINE B2 -5 193 3 2 1581 647 274 177 12 chr1 130576379 130576627 -66618805 + B4 SINE B4 2 290 -2 2 1581 249 368 9 0 chr1 130576636 130576750 -66618682 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1581 230 291 0 18 chr1 130577445 130577501 -66617931 + MIR SINE MIR 77 131 -131 2 1581 676 272 25 0 chr1 130577541 130577606 -66617826 - B4 SINE B4 -4 288 223 2 1581 680 0 12 0 chr1 130577606 130577686 -66617746 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2 1581 676 272 25 0 chr1 130577686 130577782 -66617650 - B4 SINE B4 -70 222 124 2 1581 333 102 0 0 chr1 130577804 130577863 -66617569 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1581 198 296 0 0 chr1 130577874 130577918 -66617514 + MIR SINE MIR 201 244 -18 2 1581 504 0 0 0 chr1 130578430 130578486 -66616946 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1581 568 254 8 0 chr1 130578486 130578604 -66616828 - RSINE1 SINE B4 -44 121 3 2 1581 975 246 9 19 chr1 130578605 130578820 -66616612 - B4 SINE B4 -65 227 15 2 1581 894 257 53 0 chr1 130578986 130579192 -66616240 - ID_B1 SINE B4 -7 217 1 2 1581 194 322 101 22 chr1 130579997 130580086 -66615346 + MIR SINE MIR 62 157 -105 2 1581 24 0 0 0 chr1 130580296 130580320 -66615112 + AT_rich Low_complexity Low_complexity 1 24 0 2 1581 274 245 143 41 chr1 130580444 130580542 -66614890 + B4 SINE B4 158 265 -27 2 1581 414 0 0 0 chr1 130580958 130581004 -66614428 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 2 1581 1216 237 32 21 chr1 130581079 130581364 -66614068 - B4 SINE B4 -2 290 3 2 1581 225 194 191 15 chr1 130582415 130582483 -66612949 + B4 SINE B4 111 190 -102 2 1581 224 167 21 0 chr1 130582621 130582669 -66612763 + GA-rich Low_complexity Low_complexity 1 49 0 2 1581 736 261 87 0 chr1 130582889 130582920 -66612512 - B3 SINE B2 -1 215 183 2 1581 186 43 0 0 chr1 130582920 130582943 -66612489 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2 1581 736 261 87 0 chr1 130582943 130583106 -66612326 - B3 SINE B2 -34 182 5 2 1581 516 268 41 0 chr1 130583190 130583313 -66612119 + B4 SINE B4 142 269 -23 2 1581 408 40 0 0 chr1 130583314 130583364 -66612068 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1581 571 90 18 18 chr1 130583367 130583480 -66611952 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 2 1581 652 229 95 47 chr1 130583547 130583758 -66611674 - ID_B1 SINE B4 0 224 4 2 1581 424 287 11 0 chr1 130584585 130584679 -66610753 - ID_B1 SINE B4 -83 141 47 2 1581 367 253 139 59 chr1 130585043 130585245 -66610187 + ID_B1 SINE B4 2 219 -5 2 1581 759 153 0 0 chr1 130585250 130585381 -66610051 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 1581 875 128 17 11 chr1 130585912 130586086 -66609346 + CT-rich Low_complexity Low_complexity 2 176 0 2 1581 440 308 272 30 chr1 130586117 130586349 -66609083 - B4A SINE B4 -1 291 4 2 1581 1289 34 23 0 chr1 130587131 130587306 -66608126 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1581 22 0 0 0 chr1 130587387 130587409 -66608023 + AT_rich Low_complexity Low_complexity 1 22 0 2 1581 342 98 0 0 chr1 130587411 130587462 -66607970 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1581 287 289 12 35 chr1 130587558 130587644 -66607788 - RSINE1 SINE B4 -69 96 13 2 1581 468 0 0 0 chr1 130587702 130587754 -66607678 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 2 1581 713 250 47 83 chr1 130588324 130588516 -66606916 + ID_B1 SINE B4 34 218 -6 2 1581 329 324 97 38 chr1 130589253 130589439 -66605993 + L1ME3B LINE L1 5692 5888 -352 2 1581 577 308 27 63 chr1 130589491 130589713 -66605719 + B4A SINE B4 2 215 -77 2 1581 393 133 0 0 chr1 130589762 130589837 -66605595 + (CCCA)n Simple_repeat Simple_repeat 2 76 0 2 1581 273 229 0 114 chr1 130589859 130589938 -66605494 + B4A SINE B4 215 284 -8 2 1581 303 284 17 51 chr1 130589951 130590129 -66605303 + (CATA)n Simple_repeat Simple_repeat 1 172 0 2 1581 223 338 0 0 chr1 130590767 130590835 -66604597 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1581 883 264 59 15 chr1 130590851 130591124 -66604308 - B4A SINE B4 -4 288 4 2 1581 201 222 0 0 chr1 130591360 130591396 -66604036 + C-rich Low_complexity Low_complexity 5 40 0 2 1581 239 297 0 63 chr1 130591914 130591993 -66603439 - ID4_ SINE ID -8 75 2 2 1581 222 89 0 62 chr1 130592225 130592273 -66603159 + T-rich Low_complexity Low_complexity 1 45 0 2 1581 813 143 71 0 chr1 130592273 130592413 -66603019 - B1_Mur4 SINE Alu 0 150 1 2 1581 21 0 0 0 chr1 130592575 130592596 -66602836 + AT_rich Low_complexity Low_complexity 1 21 0 2 1581 4103 44 40 0 chr1 130592986 130593484 -66601948 - L1_Mus1 LINE L1 0 6567 6050 2 1581 748 185 15 7 chr1 130593484 130593620 -66601812 + B1_Mur4 SINE Alu 14 150 0 2 1581 2090 201 11 3 chr1 130593698 130594073 -66601359 + Lx9 LINE L1 6294 6671 -973 2 1581 827 118 71 0 chr1 130594105 130594232 -66601200 + B1_Mus1 SINE Alu 6 141 -7 2 1581 405 0 0 0 chr1 130594237 130594282 -66601150 + (CTAA)n Simple_repeat Simple_repeat 4 48 0 2 1581 2886 209 81 62 chr1 130594335 130595089 -66600343 + Lx9 LINE L1 6689 7456 -188 2 1581 295 274 0 0 chr1 130595092 130595154 -66600278 - B4A SINE B4 -230 62 1 2 1581 2198 166 76 15 chr1 130595323 130595720 -66599712 - MTC LTR MaLR 0 421 1 2 1581 302 235 29 0 chr1 130595857 130595925 -66599507 + B4A SINE B4 2 71 -221 2 1581 623 259 76 42 chr1 130596791 130597053 -66598379 + B4 SINE B4 5 275 -17 2 1581 529 327 44 13 chr1 130597529 130597687 -66597745 - B4A SINE B4 -20 272 110 2 1581 344 200 163 31 chr1 130598034 130598132 -66597300 - Charlie13b DNA Charlie -61 451 341 2 1581 274 352 41 41 chr1 130598663 130598832 -66596600 + MLT1K LTR MaLR 8 176 -419 2 1581 402 246 84 93 chr1 130598958 130599173 -66596259 + MLT1K LTR MaLR 381 593 -2 2 1581 4935 41 10 3 chr1 130599204 130599796 -66595636 + L1Md_F2 LINE L1 5987 6582 0 2 1581 21 0 0 0 chr1 130599826 130599847 -66595585 + AT_rich Low_complexity Low_complexity 1 21 0 2 1581 684 167 24 8 chr1 130599861 130600111 -66595321 + (TG)n Simple_repeat Simple_repeat 1 254 0 2 1581 180 179 0 0 chr1 130600130 130600169 -66595263 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1581 289 319 97 100 chr1 130600169 130600458 -66594974 - B4A SINE B4 0 292 5 2 1581 28 0 0 0 chr1 130600465 130600493 -66594939 + AT_rich Low_complexity Low_complexity 1 28 0 2 1581 609 14 0 0 chr1 130602215 130602285 -66593147 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1581 293 229 0 24 chr1 130602602 130602687 -66592745 + CT-rich Low_complexity Low_complexity 4 86 0 2 1581 423 0 0 0 chr1 130602690 130602737 -66592695 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1581 939 227 132 16 chr1 130602738 130602980 -66592452 - B4 SINE B4 -20 272 3 2 1581 546 16 0 0 chr1 130604003 130604066 -66591366 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2 1581 648 197 29 29 chr1 130604070 130604206 -66591226 - B1_Mur1 SINE Alu -13 136 1 2 1581 983 271 8 30 chr1 130604208 130604444 -66590988 - B4A SINE B4 -60 232 2 2 1581 1081 208 17 180 chr1 130604598 130605009 -66590423 + MTE2a LTR MaLR 1 344 -35 2 1581 232 337 84 64 chr1 130605066 130605269 -66590163 - MIRb SINE MIR -1 267 61 2 1581 1074 150 0 12 chr1 130605851 130606093 -66589339 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 2 1581 423 237 10 10 chr1 130606243 130606341 -66589091 + B4 SINE B4 1 98 -194 2 1581 363 197 15 83 chr1 130606352 130606485 -66588947 + Lx7 LINE L1 7289 7412 -284 2 1581 180 0 0 0 chr1 130606516 130606536 -66588896 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1581 314 200 14 0 chr1 130606546 130606616 -66588816 + Lx7 LINE L1 7610 7680 -16 2 1581 804 321 77 31 chr1 130606828 130607088 -66588344 + B4 SINE B4 6 277 -15 2 1581 228 245 0 0 chr1 130607095 130607144 -66588288 + CT-rich Low_complexity Low_complexity 1 49 0 2 1581 385 248 69 0 chr1 130607404 130607505 -66587927 + L2a LINE L2 3303 3410 -16 2 1581 192 298 0 0 chr1 130607507 130607621 -66587811 + (TCCA)n Simple_repeat Simple_repeat 4 117 0 2 1581 412 197 0 0 chr1 130608673 130608744 -66586688 - BC1_Mm scRNA scRNA -81 71 1 2 1581 750 262 14 43 chr1 130608784 130608995 -66586437 + ID_B1 SINE B4 1 205 -19 2 1581 307 232 0 67 chr1 130609001 130609121 -66586311 + A-rich Low_complexity Low_complexity 1 112 0 2 1581 348 296 200 6 chr1 130609855 130610025 -66585407 + MER113A DNA MER1_type 4 206 -108 3 1581 934 223 49 5 chr1 130610068 130610271 -66585161 + ID_B1 SINE B4 2 213 -11 3 1581 387 41 0 0 chr1 130610271 130610320 -66585112 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 3 1581 226 247 65 43 chr1 130610338 130610431 -66585001 - Charlie5 DNA MER1_type -22 2602 2508 3 1581 227 185 36 18 chr1 130610489 130610544 -66584888 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 3 1581 423 0 0 0 chr1 130610783 130610830 -66584602 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1581 21 0 0 0 chr1 130611881 130611902 -66583530 + AT_rich Low_complexity Low_complexity 1 21 0 3 1581 265 267 67 0 chr1 130612034 130612109 -66583323 - MTEa LTR MaLR -299 80 1 3 1581 232 222 0 0 chr1 130612960 130613032 -66582400 - L1MA5 LINE L1 -6 6294 6223 3 1581 465 291 22 22 chr1 130613174 130613311 -66582121 - Lx8 LINE L1 -178 7295 7159 3 1581 250 254 0 17 chr1 130613308 130613368 -66582064 - Lx8 LINE L1 -257 7216 7158 3 1581 1222 234 33 133 chr1 130613633 130614053 -66581379 - MTE2a LTR MaLR 0 379 2 3 1581 345 47 0 0 chr1 130614097 130614140 -66581292 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1581 244 298 21 0 chr1 130614406 130614500 -66580932 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 3 1581 504 233 55 80 chr1 130614650 130614813 -66580619 - B4A SINE B4 0 292 134 3 1581 962 179 70 9 chr1 130614802 130615016 -66580416 - B4 SINE B4 -63 229 3 3 1581 285 98 0 0 chr1 130615854 130615895 -66579537 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1581 393 312 99 18 chr1 130616173 130616457 -66578975 + L1M5 LINE L1 5412 5718 -522 3 1581 445 286 89 39 chr1 130616803 130617061 -66578371 + L1MA6 LINE L1 6000 6270 -30 3 1581 450 260 40 8 chr1 130617125 130617249 -66578183 + RSINE1 SINE B4 2 129 -36 3 1581 220 191 0 0 chr1 130617338 130617385 -66578047 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1581 271 225 42 0 chr1 130617462 130617533 -66577899 + GA-rich Low_complexity Low_complexity 5 78 0 3 1581 1000 282 28 21 chr1 130617652 130617942 -66577490 + B4A SINE B4 1 292 0 3 1581 324 0 0 0 chr1 130618190 130618226 -66577206 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1581 189 0 0 0 chr1 130619067 130619088 -66576344 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1581 450 0 0 0 chr1 130619191 130619241 -66576191 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1581 191 61 30 0 chr1 130619253 130619286 -66576146 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1581 854 268 53 25 chr1 130619292 130619575 -66575857 - B4A SINE B4 -1 291 1 3 1581 224 30 30 0 chr1 130619705 130619738 -66575694 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1581 340 276 30 0 chr1 130620429 130620569 -66574863 - MIRb SINE MIR -38 230 84 3 1581 569 52 13 0 chr1 130620665 130620742 -66574690 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1581 627 318 10 19 chr1 130620754 130620870 -66574562 - B4A SINE B4 -89 203 87 3 1581 206 32 0 31 chr1 130620870 130620902 -66574530 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 3 1581 627 318 10 19 chr1 130620902 130620990 -66574442 - B4A SINE B4 -206 86 1 3 1581 354 229 0 0 chr1 130621213 130621283 -66574149 + MIR SINE MIR 81 150 -58 3 1581 999 222 37 0 chr1 130621285 130621501 -66573931 + ID_B1 SINE B4 1 224 0 3 1581 351 198 96 32 chr1 130622303 130622397 -66573035 + B4 SINE B4 2 101 -191 3 1581 5889 82 23 4 chr1 130622397 130623608 -66571824 + L1_Mus3 LINE L1 5083 6327 -311 3 1581 397 211 0 0 chr1 130623902 130623978 -66571454 - ID4_ SINE ID -6 77 2 3 1581 400 247 0 0 chr1 130624233 130624322 -66571110 + MTEb LTR MaLR 291 379 0 3 1581 307 105 17 17 chr1 130624437 130624495 -66570937 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1581 698 246 5 55 chr1 130624698 130624900 -66570532 - B3A SINE B2 -6 192 1 3 1581 557 261 7 7 chr1 130625446 130625585 -66569847 - B4 SINE B4 -149 143 5 3 1581 558 29 0 0 chr1 130625679 130625747 -66569685 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1581 253 327 55 27 chr1 130626227 130626337 -66569095 + MLT1H LTR MaLR 369 481 -68 3 1581 707 292 36 5 chr1 130626385 130626578 -66568854 - ID_B1 SINE B4 -15 209 11 3 1581 309 265 92 12 chr1 130626709 130626873 -66568559 + L1M3 LINE L1 4296 4472 -1668 3 1581 883 259 30 0 chr1 130627375 130627576 -66567856 + ID_B1 SINE B4 1 207 -17 3 1581 1649 229 35 21 chr1 130628437 130628811 -66566621 + MTEa LTR MaLR 1 379 0 3 1581 366 181 14 0 chr1 130629068 130629140 -66566292 + RMER30 DNA MER1_type 7 79 -123 3 1581 261 0 0 0 chr1 130629140 130629169 -66566263 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1581 386 253 0 0 chr1 130629169 130629260 -66566172 + RMER30 DNA MER1_type 111 201 -1 3 1581 654 253 109 35 chr1 130629473 130629674 -66565758 - ID_B1 SINE B4 -8 216 1 3 1581 338 267 0 0 chr1 130629718 130629793 -66565639 - ID4 SINE ID -4 79 5 3 1581 198 0 0 0 chr1 130629798 130629820 -66565612 + (TAA)n Simple_repeat Simple_repeat 2 23 0 3 1581 378 0 0 0 chr1 130629820 130629862 -66565570 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 1581 254 286 16 146 chr1 130630551 130630674 -66564758 + ID_B1 SINE B4 11 117 -107 3 1581 2180 162 46 43 chr1 130630767 130630970 -66564462 - MTC LTR MaLR -6 415 208 3 1581 405 0 0 0 chr1 130630970 130631015 -66564417 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1581 2180 162 46 43 chr1 130631015 130631225 -66564207 - MTC LTR MaLR -214 207 1 3 1581 362 197 56 0 chr1 130631225 130631296 -66564136 + ID_B1 SINE B4 134 208 -16 3 1581 671 0 0 12 chr1 130631305 130631385 -66564047 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1581 415 332 90 36 chr1 130631650 130632063 -66563369 - MLT1L LTR MaLR -52 558 124 3 1581 381 235 12 0 chr1 130632138 130632223 -66563209 + B4A SINE B4 3 88 -204 3 1581 3748 119 41 0 chr1 130632224 130632785 -66562647 + Lx2 LINE L1 6413 6996 -1 3 1581 670 231 7 0 chr1 130632878 130633021 -66562411 + B4A SINE B4 82 225 -67 3 1581 297 0 0 0 chr1 130633021 130633054 -66562378 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1581 513 0 0 0 chr1 130633090 130633147 -66562285 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1581 1443 50 28 6 chr1 130633288 130633470 -66561962 + B2_Mm2 SINE B2 2 187 -8 3 1581 239 292 42 0 chr1 130633730 130633802 -66561630 + MIR SINE MIR 39 113 -149 3 1581 491 312 12 18 chr1 130633845 130634008 -66561424 + RSINE1 SINE B4 4 165 0 3 1581 1355 208 61 17 chr1 130634110 130634403 -66561029 - MTEa LTR MaLR -11 368 63 3 1581 1186 224 55 0 chr1 130635345 130635539 -66559893 - B4 SINE B4 -5 287 79 3 1581 360 43 0 0 chr1 130635539 130635585 -66559847 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 3 1581 1186 224 55 0 chr1 130635585 130635662 -66559770 - B4 SINE B4 -214 78 2 3 1581 213 183 65 51 chr1 130636815 130636857 -66558575 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1581 818 273 43 9 chr1 130636857 130637068 -66558364 + ID_B1 SINE B4 1 218 -6 3 1581 213 183 65 51 chr1 130637068 130637163 -66558269 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 1581 2270 220 39 27 chr1 130637485 130637998 -66557434 - RLTR20D LTR ERVK 0 568 50 3 1581 1482 311 69 21 chr1 130638002 130638789 -66556643 + Lx7 LINE L1 6493 7344 -129 3 1581 760 184 7 20 chr1 130638798 130638948 -66556484 + B1_Mur4 SINE Alu 2 149 -1 3 1581 330 26 0 0 chr1 130638971 130639010 -66556422 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1581 201 158 0 0 chr1 130639114 130639152 -66556280 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 3 1581 257 274 13 27 chr1 130639580 130639655 -66555777 - B4A SINE B4 -2 290 217 3 1581 805 251 36 23 chr1 130639796 130640016 -66555416 - B4 SINE B4 -69 223 1 3 1581 183 247 155 0 chr1 130640294 130640391 -66555041 + L2 LINE L2 2843 2954 -465 3 1581 2156 130 69 0 chr1 130640394 130640755 -66554677 - ORR1B1 LTR MaLR -8 386 1 3 1581 949 246 54 89 chr1 130641112 130641425 -66554007 - MTEa LTR MaLR -22 357 56 3 1581 289 195 11 99 chr1 130641723 130641808 -66553624 + MER53 DNA hAT 90 166 -27 3 1581 1774 153 176 3 chr1 130641808 130642161 -66553271 - MTC LTR MaLR 0 421 8 3 1581 197 86 0 54 chr1 130642391 130642428 -66553004 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 3 1581 738 239 89 25 chr1 130642607 130642843 -66552589 - B4 SINE B4 -32 260 10 3 1581 1098 117 0 0 chr1 130642995 130643174 -66552258 + (TC)n Simple_repeat Simple_repeat 1 179 0 3 1581 575 260 16 8 chr1 130643177 130643305 -66552127 - B3A SINE B2 -31 167 39 3 1581 237 333 77 8 chr1 130643483 130643613 -66551819 + MLT1K LTR MaLR 85 223 -372 3 1581 1575 183 223 40 chr1 130643726 130644228 -66551204 - RMER19B LTR ERVK 0 902 309 3 1581 270 279 0 0 chr1 130644484 130644545 -66550887 + GA-rich Low_complexity Low_complexity 5 65 0 3 1581 813 211 28 39 chr1 130644995 130645177 -66550255 - ID_B1 SINE B4 0 224 45 3 1581 956 188 4 4 chr1 130645591 130645852 -66549580 + CT-rich Low_complexity Low_complexity 1 261 0 3 1581 719 259 92 60 chr1 130646374 130646657 -66548775 - B4 SINE B4 0 292 1 3 1581 354 149 0 0 chr1 130646908 130646995 -66548437 + (T)n Simple_repeat Simple_repeat 1 87 0 3 1581 1152 88 0 0 chr1 130647005 130647152 -66548280 - B1_Mus1 SINE Alu 0 148 2 3 1581 576 325 6 0 chr1 130647231 130647391 -66548041 + B3A SINE B2 13 173 -25 3 1581 426 39 0 0 chr1 130647392 130647444 -66547988 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1581 522 0 0 0 chr1 130648087 130648145 -66547287 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1581 698 276 144 7 chr1 130648605 130648882 -66546550 + MTE2a LTR MaLR 57 371 -8 3 1581 401 264 64 0 chr1 130648895 130649005 -66546427 + RSINE1 SINE B4 43 159 -6 3 1581 261 0 0 0 chr1 130649336 130649365 -66546067 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1581 21 0 0 0 chr1 130649913 130649934 -66545498 + AT_rich Low_complexity Low_complexity 1 21 0 4 1581 257 287 82 18 chr1 130650007 130650023 -66545409 - B1F SINE Alu 0 149 33 4 1581 457 228 0 21 chr1 130650023 130650117 -66545315 - ID_B1 SINE B4 -19 205 114 4 1581 887 237 0 16 chr1 130650112 130650305 -66545127 - MTE2b LTR MaLR -188 191 2 4 1581 438 203 240 25 chr1 130650631 130650752 -66544680 + ID_B1 SINE B4 78 224 0 4 1581 343 309 0 40 chr1 130650832 130650933 -66544499 + B4 SINE B4 25 121 -171 4 1581 361 253 35 0 chr1 130650961 130651048 -66544384 + B4 SINE B4 192 281 -11 4 1581 581 179 87 135 chr1 130651268 130651475 -66543957 - B3A SINE B2 -1 197 1 4 1581 327 282 133 7 chr1 130651486 130651629 -66543803 - RSINE1 SINE B4 -2 163 3 4 1581 786 36 9 18 chr1 130652435 130652547 -66542885 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 4 1581 961 146 6 11 chr1 130652567 130652702 -66542730 + polypyrimidine Low_complexity Low_complexity 46 180 0 4 1581 1404 51 0 0 chr1 130652702 130652879 -66542553 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 4 1581 961 146 6 11 chr1 130652879 130652923 -66542509 + polypyrimidine Low_complexity Low_complexity 2 45 0 4 1581 432 0 0 0 chr1 130654021 130654069 -66541363 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1581 252 0 0 0 chr1 130654069 130654096 -66541336 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1581 275 287 23 11 chr1 130654198 130654286 -66541146 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 4 1581 203 250 0 0 chr1 130654263 130654303 -66541129 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1581 462 296 92 42 chr1 130654303 130654564 -66540868 - B4A SINE B4 -14 278 5 4 1581 463 296 147 6 chr1 130654585 130654755 -66540677 - B4A SINE B4 -94 198 5 4 1581 664 285 28 37 chr1 130655940 130656155 -66539277 - B4 SINE B4 -78 214 2 4 1581 218 244 0 0 chr1 130656541 130656586 -66538846 - ID4 SINE ID -36 47 3 4 1581 773 287 0 57 chr1 130656692 130656921 -66538511 - B3 SINE B2 0 216 1 4 1581 3597 50 0 7 chr1 130657158 130657601 -66537831 - L1Md_F2 LINE L1 -12 6570 6131 4 1581 1787 38 0 0 chr1 130657601 130657811 -66537621 + L1Md_F2 LINE L1 5761 5970 -612 4 1581 266 360 0 13 chr1 130658070 130658146 -66537286 - RSINE1 SINE B4 -90 75 1 4 1581 421 338 35 7 chr1 130658171 130658314 -66537118 + RSINE1 SINE B4 4 150 -15 4 1581 757 307 8 30 chr1 130659921 130660156 -66535276 + B4A SINE B4 1 230 -62 4 1581 547 291 45 33 chr1 130661077 130661322 -66534110 - B4A SINE B4 -13 279 32 4 1581 303 200 42 14 chr1 130661552 130661623 -66533809 + B4 SINE B4 1 73 -219 4 1581 457 240 91 0 chr1 130661632 130661683 -66533749 - B4 SINE B4 -151 141 88 4 1581 888 37 0 0 chr1 130661683 130661791 -66533641 + (TCC)n Simple_repeat Simple_repeat 2 109 0 4 1581 457 240 91 0 chr1 130661791 130661860 -66533572 - B4 SINE B4 -205 87 12 4 1581 180 227 0 0 chr1 130662043 130662087 -66533345 - MIRb SINE MIR -91 177 134 4 1581 534 290 58 68 chr1 130662891 130663098 -66532334 + B4A SINE B4 7 211 -81 4 1581 224 0 83 42 chr1 130663098 130663146 -66532286 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1581 333 214 0 103 chr1 130663156 130663234 -66532198 + B4A SINE B4 222 291 -1 4 1581 3171 161 32 102 chr1 130663894 130664636 -66530796 + RMER6C LTR ERVK 1 690 0 4 1581 635 254 52 28 chr1 130664814 130665025 -66530407 - B4 SINE B4 -11 281 66 4 1581 279 246 0 0 chr1 130665520 130665585 -66529847 - RMER15 LTR ERVL -108 467 403 4 1581 384 135 0 0 chr1 130666116 130666190 -66529242 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1581 556 264 85 78 chr1 130666336 130666619 -66528813 - B4A SINE B4 -5 287 3 4 1581 3838 195 49 61 chr1 130666637 130667059 -66528373 - Lx7 LINE L1 -4 7692 7303 4 1581 243 0 0 0 chr1 130667059 130667086 -66528346 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 4 1581 3838 192 51 62 chr1 130667086 130667590 -66527842 - Lx7 LINE L1 -394 7302 6798 4 1581 757 235 107 0 chr1 130668078 130668274 -66527158 - ID_B1 SINE B4 -3 221 5 4 1581 227 31 0 30 chr1 130668455 130668488 -66526944 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1581 633 235 0 0 chr1 130669204 130669319 -66526113 + RSINE1 SINE B4 8 122 -43 4 1581 279 113 0 0 chr1 130669532 130669585 -66525847 + (T)n Simple_repeat Simple_repeat 1 53 0 4 1581 1185 28 28 0 chr1 130669585 130669726 -66525706 - B1_Mm SINE Alu 0 147 3 4 1581 36016 47 0 3 chr1 130669797 130675265 -66520167 + L1Md_T LINE L1 44 5589 -297 4 1581 8595 33 0 0 chr1 130675265 130676261 -66519171 + L1Md_T LINE L1 5590 6585 0 4 1581 460 30 15 15 chr1 130676783 130676850 -66518582 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1581 460 311 87 34 chr1 130676863 130677129 -66518303 - B4 SINE B4 -12 280 1 4 1581 441 296 23 0 chr1 130677129 130677261 -66518171 - L1MA5 LINE L1 -3 6297 6163 4 1581 266 386 87 36 chr1 130677300 130677496 -66517936 - B3 SINE B2 0 216 11 4 1581 628 312 14 0 chr1 130677360 130677501 -66517931 - RSINE1 SINE B4 -16 149 7 4 1581 471 48 0 0 chr1 130677532 130677594 -66517838 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1581 800 247 15 35 chr1 130677748 130677949 -66517483 - B3A SINE B2 0 198 2 4 1581 343 332 126 0 chr1 130677987 130678186 -66517246 - L1MB5 LINE L1 -47 6127 5904 4 1581 234 250 0 0 chr1 130678212 130678272 -66517160 + GA-rich Low_complexity Low_complexity 1 60 0 4 1581 401 316 18 0 chr1 130678279 130678393 -66517039 - RSINE1 SINE B4 -7 158 43 4 1581 1068 251 62 24 chr1 130678478 130678764 -66516668 - B4 SINE B4 0 292 8 4 1582 251 290 86 0 chr1 130679398 130679491 -66515941 + LTR48 LTR ERV1 53 153 -634 4 1582 322 226 13 43 chr1 130679416 130679647 -66515785 + RMER17D LTR ERVK 250 473 -416 4 1582 213 65 0 0 chr1 130679647 130679678 -66515754 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1582 361 247 22 33 chr1 130680031 130680123 -66515309 + B4 SINE B4 1 91 -201 4 1582 1129 75 0 27 chr1 130680128 130680278 -66515154 + B1_Mus2 SINE Alu 2 147 0 4 1582 505 42 0 27 chr1 130680280 130680354 -66515078 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 4 1582 747 311 14 19 chr1 130680354 130680564 -66514868 + B4 SINE B4 82 290 -2 4 1582 356 275 99 63 chr1 130680631 130680842 -66514590 - L1MEg LINE L1 -4132 2608 2439 4 1582 394 194 53 0 chr1 130680854 130680967 -66514465 - MTEb LTR MaLR 0 379 250 4 1582 1122 245 37 152 chr1 130681320 130681748 -66513684 - MTE2a LTR MaLR 0 379 1 4 1582 483 325 85 28 chr1 130681943 130682155 -66513277 - ID_B1 SINE B4 0 224 1 4 1582 566 158 23 28 chr1 130683083 130683259 -66512173 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 4 1582 322 287 11 0 chr1 130685212 130685306 -66510126 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1582 267 31 0 0 chr1 130685435 130685467 -66509965 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1582 382 325 118 82 chr1 130685469 130685592 -66509840 - B4 SINE B4 -36 256 3 4 1582 781 149 0 8 chr1 130685592 130685714 -66509718 - B3 SINE B2 -93 123 3 4 1582 264 299 66 44 chr1 130685838 130685929 -66509503 - B3A SINE B2 -105 93 1 4 1582 203 350 39 39 chr1 130686745 130686873 -66508559 + L2a LINE L2 3031 3158 -268 4 1582 505 257 89 134 chr1 130686882 130687151 -66508281 + B4 SINE B4 36 292 0 4 1582 202 279 0 0 chr1 130687155 130687192 -66508240 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 4 1582 213 65 0 0 chr1 130687192 130687223 -66508209 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 4 1582 202 279 0 0 chr1 130687223 130687246 -66508186 + (CATATA)n Simple_repeat Simple_repeat 4 26 0 4 1582 633 277 0 14 chr1 130687350 130687493 -66507939 + ID_B1 SINE B4 83 223 -1 4 1582 795 75 0 0 chr1 130688108 130688228 -66507204 + (GA)n Simple_repeat Simple_repeat 1 120 0 4 1582 227 278 193 9 chr1 130688355 130688464 -66506968 + MIRb SINE MIR 27 155 -113 4 1582 1108 245 23 19 chr1 130688468 130688730 -66506702 + B4 SINE B4 2 264 -28 4 1582 427 286 22 29 chr1 130688795 130688932 -66506500 + RSINE1 SINE B4 24 159 -6 4 1582 450 0 0 0 chr1 130688952 130689002 -66506430 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 4 1582 260 329 14 0 chr1 130689217 130689290 -66506142 + ID4_ SINE ID 9 82 -1 4 1582 849 285 91 20 chr1 130689333 130689587 -66505845 + B4A SINE B4 9 280 -12 4 1582 875 227 127 15 chr1 130690120 130690380 -66505052 - B4 SINE B4 -3 289 1 4 1582 615 262 47 37 chr1 130690857 130691047 -66504385 - ID_B1 SINE B4 -32 192 1 4 1582 639 238 18 125 chr1 130691307 130691475 -66503957 + ID_B1 SINE B4 6 155 -69 4 1582 1132 62 7 14 chr1 130691476 130691623 -66503809 + B1_Mus2 SINE Alu 2 147 0 4 1582 285 51 0 0 chr1 130691652 130691691 -66503741 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 4 1582 247 273 0 52 chr1 130691698 130691756 -66503676 + ID_B1 SINE B4 150 204 -20 4 1582 332 111 0 16 chr1 130691758 130691822 -66503610 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1582 522 0 0 0 chr1 130692202 130692260 -66503172 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1582 297 0 0 0 chr1 130692260 130692292 -66503140 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1582 541 247 113 6 chr1 130692294 130692453 -66502979 - Tigger5 DNA MER2_type -95 2311 2136 4 1582 882 223 23 19 chr1 130692780 130692995 -66502437 + B4 SINE B4 2 217 -75 4 1582 222 37 0 0 chr1 130693553 130693580 -66501852 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1582 1202 48 14 0 chr1 130693912 130694057 -66501375 + B1_Mm SINE Alu 1 147 0 4 1582 189 0 0 0 chr1 130694086 130694107 -66501325 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1582 603 227 6 102 chr1 130694416 130694487 -66500945 + RSINE1 SINE B4 11 78 -87 4 1582 1127 236 61 88 chr1 130694487 130694805 -66500627 + ORR1D2 LTR MaLR 1 327 -43 5 1582 189 0 0 0 chr1 130694805 130694826 -66500606 + (ATGGTG)n Simple_repeat Simple_repeat 3 23 0 5 1582 1127 236 61 88 chr1 130694826 130694884 -66500548 + ORR1D2 LTR MaLR 328 367 -3 5 1582 603 227 6 102 chr1 130694884 130694979 -66500453 + RSINE1 SINE B4 79 161 -4 4 1582 555 241 47 89 chr1 130695130 130695213 -66500219 - B4 SINE B4 -105 187 111 5 1582 1366 209 99 38 chr1 130695213 130695606 -66499826 - MTD LTR MaLR 0 419 3 5 1582 555 241 47 89 chr1 130695606 130695713 -66499719 - B4 SINE B4 -182 110 5 5 1582 238 339 25 33 chr1 130696507 130696629 -66498803 + ORR1E LTR MaLR 10 130 -229 5 1582 184 149 0 41 chr1 130696637 130696686 -66498746 + CT-rich Low_complexity Low_complexity 1 47 0 5 1582 404 243 214 9 chr1 130696865 130696977 -66498455 - ID_B1 SINE B4 0 224 90 5 1582 258 179 0 0 chr1 130697141 130697197 -66498235 + GA-rich Low_complexity Low_complexity 2 57 0 5 1582 22 0 0 0 chr1 130697319 130697341 -66498091 + AT_rich Low_complexity Low_complexity 1 22 0 5 1582 518 328 169 19 chr1 130698344 130698652 -66496780 + MLT1A1 LTR MaLR 26 379 -29 5 1582 506 298 72 61 chr1 130698652 130698916 -66496516 + MLT1B LTR MaLR 89 355 -35 5 1582 921 172 31 0 chr1 130698965 130699128 -66496304 - MTD LTR MaLR 0 419 252 5 1582 474 335 3 14 chr1 130699147 130699409 -66496023 + CT-rich Low_complexity Low_complexity 1 259 0 5 1582 561 119 0 0 chr1 130699410 130699511 -66495921 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 5 1582 181 338 84 0 chr1 130699616 130699687 -66495745 + L2c LINE L2 3271 3347 -40 5 1582 228 339 72 21 chr1 130700355 130700548 -66494884 + LTR88b LTR Gypsy? 42 244 -593 5 1582 834 275 35 78 chr1 130700821 130701048 -66494384 + B4 SINE B4 1 215 -77 5 1582 459 0 0 0 chr1 130701048 130701099 -66494333 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 5 1582 834 275 35 78 chr1 130701099 130701155 -66494277 + B4 SINE B4 216 272 -20 5 1582 315 0 0 0 chr1 130701200 130701235 -66494197 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1582 396 0 0 0 chr1 130701235 130701278 -66494154 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1582 474 253 80 95 chr1 130701293 130701555 -66493877 + L1MB7 LINE L1 5888 6145 -39 5 1582 432 51 0 0 chr1 130702002 130702061 -66493371 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 5 1582 405 0 0 0 chr1 130702066 130702111 -66493321 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1582 1053 250 14 57 chr1 130702112 130702392 -66493040 - B4 SINE B4 -23 269 2 5 1582 432 0 0 0 chr1 130703258 130703306 -66492126 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1582 986 253 75 8 chr1 130703329 130703584 -66491848 - B4A SINE B4 -8 284 13 5 1582 466 244 34 109 chr1 130703604 130703898 -66491534 - RMER17C LTR ERVK -59 351 80 5 1582 343 148 0 22 chr1 130703906 130703996 -66491436 + GA-rich Low_complexity Low_complexity 1 88 0 5 1582 436 217 94 123 chr1 130704779 130705061 -66490371 + MTD LTR MaLR 1 405 -14 5 1582 589 318 61 15 chr1 130705784 130705982 -66489450 - ID_B1 SINE B4 -17 207 1 5 1582 543 31 0 0 chr1 130706593 130706658 -66488774 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1582 527 241 18 18 chr1 130707373 130707487 -66487945 + B4A SINE B4 43 156 -136 5 1582 366 292 90 52 chr1 130707561 130707716 -66487716 + B4A SINE B4 131 291 -1 5 1582 612 238 164 17 chr1 130707902 130708133 -66487299 + L1MA9 LINE L1 5254 5518 -671 5 1582 1021 267 94 21 chr1 130708139 130708468 -66486964 + ORR1E LTR MaLR 1 353 -6 5 1582 769 262 60 8 chr1 130708503 130708753 -66486679 + L1MA9 LINE L1 5563 5825 -487 5 1582 533 285 126 20 chr1 130708753 130709007 -66486425 + B4A SINE B4 8 288 -4 5 1582 363 141 56 0 chr1 130709007 130709078 -66486354 + L1MA9 LINE L1 5814 5888 -403 5 1582 452 18 18 0 chr1 130709079 130709136 -66486296 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1582 370 322 68 47 chr1 130709179 130709501 -66485931 + L1MA9 LINE L1 5984 6312 0 5 1582 717 317 13 53 chr1 130709611 130709696 -66485736 - B4 SINE B4 0 292 214 5 1582 588 14 0 0 chr1 130709696 130709765 -66485667 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 5 1582 717 317 13 53 chr1 130709765 130709982 -66485450 - B4 SINE B4 -79 213 2 5 1582 449 349 65 43 chr1 130710040 130710411 -66485021 - L1M5 LINE L1 -2392 3754 3376 5 1582 245 111 44 0 chr1 130710503 130710548 -66484884 + (TATG)n Simple_repeat Simple_repeat 4 50 0 5 1582 317 287 158 41 chr1 130710548 130710719 -66484713 - HAL1-3A_ME LINE L1 -844 2014 1824 5 1582 30 0 0 0 chr1 130710722 130710752 -66484680 + AT_rich Low_complexity Low_complexity 1 30 0 5 1582 248 237 119 50 chr1 130710755 130710915 -66484517 - L1MA6 LINE L1 0 6300 6130 5 1582 258 195 24 12 chr1 130710915 130710998 -66484434 + CT-rich Low_complexity Low_complexity 3 86 0 5 1582 770 130 53 8 chr1 130711133 130711265 -66484167 - B1_Mus2 SINE Alu -7 140 3 5 1582 308 269 130 47 chr1 130711300 130711577 -66483855 - L1M5 LINE L1 -3069 3077 2778 5 1582 266 194 16 0 chr1 130711716 130711778 -66483654 + CT-rich Low_complexity Low_complexity 2 64 0 5 1582 378 247 0 0 chr1 130711788 130711869 -66483563 - ID_B1 SINE B4 -1 223 143 5 1582 2782 106 16 34 chr1 130711891 130712331 -66483101 - Lx LINE L1 -1 6653 6222 5 1582 265 286 0 45 chr1 130712339 130712427 -66483005 - PB1D10 SINE Alu -33 84 1 5 1582 531 289 7 32 chr1 130712427 130712504 -66482928 - ID SINE ID -146 78 6 5 1582 186 161 15 138 chr1 130712834 130712899 -66482533 - L4 LINE RTE -304 1725 1669 5 1582 1869 173 45 40 chr1 130713184 130713564 -66481868 + ORR1C2 LTR MaLR 3 384 0 5 1582 200 178 0 43 chr1 130713663 130713710 -66481722 + GA-rich Low_complexity Low_complexity 4 48 0 5 1582 377 130 19 39 chr1 130713933 130714037 -66481395 + (TTAA)n Simple_repeat Simple_repeat 2 103 0 5 1582 2107 275 92 20 chr1 130714037 130714731 -66480701 - Lx8 LINE L1 -186 7287 6544 5 1582 688 287 61 100 chr1 130714737 130715128 -66480304 - LTR84a LTR ERVL -381 376 1 5 1582 184 300 56 14 chr1 130715196 130715267 -66480165 - L2c LINE L2 -46 3341 3268 5 1582 601 21 42 10 chr1 130715397 130715493 -66479939 + (GA)n Simple_repeat Simple_repeat 1 99 0 5 1582 1204 230 33 122 chr1 130716093 130716529 -66478903 - MTE2a LTR MaLR 0 419 1 5 1582 283 338 77 7 chr1 130716891 130717034 -66478398 + MLT2F LTR ERVL 269 421 -242 5 1582 434 266 262 14 chr1 130717200 130717345 -66478087 + B3A SINE B2 2 182 -16 5 1582 274 296 53 80 chr1 130717589 130717776 -66477656 + MLT2F LTR ERVL 433 614 -49 5 1582 495 0 0 0 chr1 130717893 130717948 -66477484 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 5 1582 1428 163 136 7 chr1 130717948 130718257 -66477175 - Lx9 LINE L1 -12 7632 7284 5 1582 298 218 39 0 chr1 130718257 130718335 -66477097 + Lx9 LINE L1 7195 7275 -369 5 1582 655 176 136 59 chr1 130718344 130718513 -66476919 - B3A SINE B2 -10 185 4 5 1582 1044 277 42 15 chr1 130719364 130719628 -66475804 + B4 SINE B4 2 272 -20 5 1582 210 289 0 0 chr1 130719658 130719762 -66475670 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1582 230 320 39 0 chr1 130720494 130720572 -66474860 - PB1D9 SINE Alu -5 115 35 5 1582 624 62 0 0 chr1 130721344 130721425 -66474007 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 5 1582 559 265 45 26 chr1 130721453 130721608 -66473824 - B3A SINE B2 -5 193 36 5 1582 234 0 0 0 chr1 130721623 130721649 -66473783 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1582 726 281 38 48 chr1 130721665 130721874 -66473558 - B4 SINE B4 -85 207 1 5 1582 366 297 104 42 chr1 130721882 130722026 -66473406 + MER5A DNA MER1_type 5 157 -32 5 1582 871 166 21 0 chr1 130722332 130722477 -66472955 + B1_Mur2 SINE Alu 2 149 0 5 1582 543 231 60 0 chr1 130722527 130722661 -66472771 - RSINE1 SINE B4 -21 144 3 5 1582 524 214 286 0 chr1 130722661 130722804 -66472628 - B4A SINE B4 -62 230 44 5 1582 182 105 26 0 chr1 130723007 130723045 -66472387 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1582 873 278 150 31 chr1 130723609 130723969 -66471463 - MTD LTR MaLR -14 405 3 5 1582 655 175 4 4 chr1 130724544 130724810 -66470622 + (TG)n Simple_repeat Simple_repeat 1 266 0 5 1582 395 130 13 0 chr1 130724809 130724886 -66470546 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1582 330 26 0 0 chr1 130725791 130725830 -66469602 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1582 654 221 20 33 chr1 130725830 130725980 -66469452 - B3A SINE B2 -50 148 1 5 1582 302 186 161 89 chr1 130726028 130726140 -66469292 - L2a LINE L2 -20 3406 3287 5 1582 465 19 0 0 chr1 130726459 130726513 -66468919 + (TATG)n Simple_repeat Simple_repeat 3 56 0 5 1582 205 255 10 10 chr1 130726606 130726705 -66468727 + (TG)n Simple_repeat Simple_repeat 1 99 0 5 1582 212 227 30 15 chr1 130726711 130726778 -66468654 + (TATG)n Simple_repeat Simple_repeat 4 71 0 5 1582 180 0 0 0 chr1 130726787 130726807 -66468625 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1582 199 172 62 0 chr1 130726816 130726880 -66468552 + (CATG)n Simple_repeat Simple_repeat 1 68 0 5 1582 785 271 67 56 chr1 130726894 130727164 -66468268 - B4 SINE B4 0 292 20 5 1582 216 0 0 0 chr1 130727336 130727360 -66468072 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1582 848 169 14 0 chr1 130727468 130727610 -66467822 + URR1A DNA MER1_type 83 226 0 5 1582 239 200 68 54 chr1 130727801 130727875 -66467557 + MIR SINE MIR 94 168 -94 5 1582 207 300 33 0 chr1 130727872 130727932 -66467500 - MIRm SINE MIR -11 265 204 5 1582 486 301 38 19 chr1 130728220 130728379 -66467053 + ID_B1 SINE B4 2 163 -61 5 1582 438 302 41 25 chr1 130728380 130728502 -66466930 + RSINE1 SINE B4 32 155 -10 5 1582 298 271 0 0 chr1 130728537 130728607 -66466825 + ID_B1 SINE B4 151 220 -4 5 1582 252 122 0 0 chr1 130729230 130729271 -66466161 + (CAAAG)n Simple_repeat Simple_repeat 3 43 0 5 1582 960 266 29 25 chr1 130731017 130731291 -66464141 - B4 SINE B4 -16 276 2 5 1582 424 214 91 10 chr1 130731771 130731870 -66463562 - ID_B1 SINE B4 -2 222 116 5 1582 405 0 0 0 chr1 130732028 130732073 -66463359 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1582 1011 295 4 8 chr1 130732091 130732334 -66463098 - B4 SINE B4 -50 242 1 5 1582 351 284 264 19 chr1 130732495 130732703 -66462729 + MLT1L LTR MaLR 252 510 -100 5 1582 286 107 18 18 chr1 130733014 130733071 -66462361 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 6 1582 513 0 0 0 chr1 130733073 130733130 -66462302 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1582 672 273 7 0 chr1 130733147 130733290 -66462142 - B4 SINE B4 -23 269 126 6 1582 359 282 0 21 chr1 130734547 130734658 -66460774 + MIR SINE MIR 54 168 -108 6 1582 1798 139 30 13 chr1 130734660 130734951 -66460481 - RLTR28 LTR ERVL -2 522 227 6 1582 525 280 26 47 chr1 130734951 130735142 -66460290 - RLTR23 LTR ERV1 0 430 244 6 1582 1326 99 26 5 chr1 130735330 130735523 -66459909 - RLTR28B LTR ERVL -258 223 27 6 1582 487 298 86 6 chr1 130735532 130735694 -66459738 + B4A SINE B4 50 224 -68 6 1582 435 83 0 0 chr1 130735790 130735850 -66459582 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1582 36 40 0 0 chr1 130735916 130735966 -66459466 + AT_rich Low_complexity Low_complexity 1 50 0 6 1582 705 159 138 0 chr1 130736337 130736475 -66458957 + RMER15 LTR ERVL 4 160 -415 6 1582 606 68 0 0 chr1 130736491 130736579 -66458853 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 6 1582 678 209 36 0 chr1 130736589 130736728 -66458704 + RMER15 LTR ERVL 432 575 0 6 1582 700 265 43 12 chr1 130736728 130736889 -66458543 - ID_B1 SINE B4 -57 167 2 6 1582 1168 151 14 33 chr1 130736938 130737150 -66458282 - B3 SINE B2 -7 209 2 6 1582 454 231 77 69 chr1 130737362 130737492 -66457940 + RSINE1 SINE B4 11 141 -24 6 1582 441 0 0 0 chr1 130737493 130737542 -66457890 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1582 237 65 0 0 chr1 130738048 130738079 -66457353 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1582 1196 257 215 11 chr1 130738220 130738676 -66456756 - RMER15 LTR ERVL 0 575 27 6 1582 260 246 18 0 chr1 130738699 130738756 -66456676 - RMER15 LTR ERVL -515 60 3 6 1582 692 288 54 25 chr1 130739203 130739406 -66456026 + B4 SINE B4 42 250 -42 6 1582 288 0 0 0 chr1 130739533 130739565 -66455867 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1582 258 295 0 10 chr1 130740296 130740392 -66455040 + L1MA9 LINE L1 6218 6312 0 6 1582 368 276 147 0 chr1 130740730 130740846 -66454586 - MER5A DNA MER1_type -26 163 31 6 1582 1213 242 18 11 chr1 130741107 130741383 -66454049 + B4 SINE B4 1 278 -14 6 1582 252 0 0 0 chr1 130741452 130741480 -66453952 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1582 381 43 0 0 chr1 130741502 130741549 -66453883 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 6 1582 296 341 11 0 chr1 130742783 130742874 -66452558 - RMER15 LTR ERVL -111 464 373 6 1582 180 111 0 0 chr1 130743006 130743033 -66452399 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 1582 204 40 0 0 chr1 130743080 130743105 -66452327 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 1582 433 304 177 10 chr1 130743144 130743347 -66452085 + MER21B LTR ERV1 12 248 -615 6 1582 42009 4 0 0 chr1 130743354 130749924 -66445508 - L1Md_A LINE L1 0 6582 13 6 1582 1146 317 79 21 chr1 130749924 130750407 -66445025 + MER21B LTR ERV1 229 739 -124 6 1582 343 289 122 47 chr1 130750875 130751154 -66444278 + L1ME4a LINE L1 5771 6070 -54 6 1582 244 220 41 68 chr1 130751856 130751957 -66443475 - MIRm SINE MIR -54 154 52 6 1582 778 276 158 9 chr1 130752145 130752485 -66442947 - MTD LTR MaLR -15 404 1 6 1582 2432 141 41 34 chr1 130752867 130753285 -66442147 - MTC LTR MaLR 0 421 1 6 1582 347 280 154 41 chr1 130753285 130753408 -66442024 + B1F SINE Alu 13 149 0 6 1582 231 250 97 56 chr1 130753417 130753489 -66441943 + ID4_ SINE ID 8 82 -1 6 1582 265 261 115 57 chr1 130753816 130753938 -66441494 - MamGypLTR1d LTR Gypsy -486 327 199 6 1582 850 258 33 9 chr1 130754706 130754917 -66440515 + MTEa LTR MaLR 162 377 -2 6 1582 889 254 24 0 chr1 130755294 130755507 -66439925 + ID_B1 SINE B4 1 218 -6 6 1582 1251 236 67 33 chr1 130755597 130755957 -66439475 - RMER5 LTR ERV1 -130 404 33 6 1582 615 286 32 79 chr1 130757443 130757659 -66437773 - B4 SINE B4 -23 269 64 6 1582 629 243 153 25 chr1 130757693 130757899 -66437533 - MTD LTR MaLR -14 405 188 6 1582 2819 98 77 8 chr1 130758233 130758635 -66436797 - RLTR23 LTR ERV1 0 430 1 6 1582 419 286 176 0 chr1 130758786 130758968 -66436464 - L1MB2 LINE L1 -5 6166 5953 6 1582 623 13 13 0 chr1 130758969 130759045 -66436387 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 6 1582 1117 252 122 35 chr1 130759139 130759509 -66435923 + MTD LTR MaLR 10 411 -8 6 1582 395 265 210 22 chr1 130759571 130759795 -66435637 - L1MB3 LINE L1 -215 5963 5698 6 1582 210 37 0 0 chr1 130759802 130759829 -66435603 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1582 2416 166 122 8 chr1 130759833 130759896 -66435536 - RLTR24 LTR ERV1 -1 528 464 6 1582 207 0 0 0 chr1 130759896 130759919 -66435513 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 6 1582 2416 166 122 8 chr1 130759919 130760329 -66435103 - RLTR24 LTR ERV1 -66 463 2 6 1582 1076 258 117 41 chr1 130760517 130760807 -66434625 - MTE2b LTR MaLR -10 369 53 6 1582 1485 125 4 35 chr1 130760807 130761039 -66434393 + URR1B DNA MER1_type 1 225 0 6 1582 1076 258 117 41 chr1 130761039 130761091 -66434341 - MTE2b LTR MaLR -327 52 1 6 1582 401 233 123 17 chr1 130761815 130761942 -66433490 - ORR1D2 LTR MaLR -31 343 205 6 1582 277 222 19 0 chr1 130761954 130762008 -66433424 - ORR1D2 LTR MaLR -314 56 2 6 1582 324 211 0 0 chr1 130762008 130762084 -66433348 + (CAT)n Simple_repeat Simple_repeat 1 76 0 6 1582 320 373 81 18 chr1 130762144 130762365 -66433067 - MIR SINE MIR -25 237 3 6 1582 5617 155 32 17 chr1 130762645 130763636 -66431796 - Lx2B LINE L1 -7 6993 5988 6 1582 249 139 0 0 chr1 130763825 130763868 -66431564 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 6 1582 487 271 69 78 chr1 130764133 130764337 -66431095 + MLT1C LTR MaLR 34 235 -232 6 1582 974 290 143 52 chr1 130764329 130764812 -66430620 - MT2A LTR ERVL -6 527 1 6 1582 827 209 86 0 chr1 130766326 130766513 -66428919 + ID_B1 SINE B4 5 207 -17 6 1582 338 42 0 20 chr1 130766517 130766566 -66428866 + (CAACC)n Simple_repeat Simple_repeat 2 49 0 6 1582 257 271 11 56 chr1 130766765 130766855 -66428577 - RMER15 LTR ERVL -43 532 447 6 1582 471 78 0 0 chr1 130767003 130767067 -66428365 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1582 724 265 56 40 chr1 130767512 130767856 -66427576 - B4 SINE B4 -68 224 3 6 1582 672 74 0 0 chr1 130769278 130769373 -66426059 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 6 1582 408 227 11 54 chr1 130769417 130769510 -66425922 + ID_B1 SINE B4 9 97 -127 6 1582 883 261 40 62 chr1 130769519 130769943 -66425489 + RLTR28 LTR ERVL 9 443 -38 6 1582 501 322 43 18 chr1 130770007 130770288 -66425144 + B4A SINE B4 5 292 0 6 1582 272 282 14 0 chr1 130770374 130770445 -66424987 + ID_B1 SINE B4 137 208 -16 6 1582 369 0 0 0 chr1 130770449 130770490 -66424942 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1582 551 88 11 0 chr1 130770490 130770581 -66424851 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 1582 286 256 121 12 chr1 130771076 130771242 -66424190 + L1MB2 LINE L1 5922 6105 -66 6 1582 356 274 86 40 chr1 130771305 130771457 -66423975 - RSINE1 SINE B4 -4 161 3 6 1582 730 193 51 45 chr1 130771632 130771789 -66423643 + ID_B1 SINE B4 59 216 -8 6 1582 1859 170 98 54 chr1 130772350 130772760 -66422672 - RMER1B Other Other -9 1057 630 6 1582 279 0 0 0 chr1 130772760 130772791 -66422641 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1582 267 186 123 41 chr1 130772829 130772902 -66422530 - RSINE1 SINE B4 -85 80 2 6 1582 23 0 0 0 chr1 130772904 130772927 -66422505 + AT_rich Low_complexity Low_complexity 1 23 0 6 1582 250 232 15 130 chr1 130773012 130773143 -66422289 - L1MB3 LINE L1 -198 5970 5855 6 1582 414 0 0 0 chr1 130773207 130773253 -66422179 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1582 192 135 0 0 chr1 130773392 130773429 -66422003 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1582 817 312 42 19 chr1 130773458 130773837 -66421595 - L1MA4A LINE L1 -372 5931 5544 6 1582 532 329 0 19 chr1 130773885 130774040 -66421392 - RSINE1 SINE B4 -11 154 3 6 1582 249 347 35 7 chr1 130774186 130774331 -66421101 + MIRb SINE MIR 26 174 -94 6 1582 643 297 42 14 chr1 130774620 130774832 -66420600 + ID_B1 SINE B4 4 221 -3 6 1582 287 167 15 0 chr1 130775418 130775484 -66419948 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1582 237 311 133 0 chr1 130776563 130776698 -66418734 + MER5B DNA MER1_type 15 167 -11 6 1582 530 115 60 18 chr1 130776919 130777087 -66418345 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1582 294 148 86 6 chr1 130777124 130777287 -66418145 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1582 181 149 75 0 chr1 130777311 130777378 -66418054 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1582 368 123 74 14 chr1 130777405 130777553 -66417879 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 1582 727 212 77 16 chr1 130777939 130778121 -66417311 - MTEb LTR MaLR -186 193 1 6 1582 989 124 153 40 chr1 130778658 130778860 -66416572 - URR1B DNA MER1_type 0 225 1 6 1582 270 0 0 0 chr1 130779268 130779298 -66416134 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1582 1646 276 42 75 chr1 130779532 130780237 -66415195 - L1MC LINE L1 -1018 5128 4436 6 1582 592 270 53 13 chr1 130780237 130780387 -66415045 - RSINE1 SINE B4 -7 158 3 6 1582 1646 276 42 75 chr1 130780387 130780459 -66414973 - L1MC LINE L1 -1711 4435 4377 6 1582 920 185 96 10 chr1 130780459 130780656 -66414776 - B3 SINE B2 -1 215 2 6 1582 1646 276 42 75 chr1 130780656 130780704 -66414728 - L1MC LINE L1 -1770 4376 4329 6 1582 505 170 10 31 chr1 130780704 130780801 -66414631 - Lx7 LINE L1 -557 7139 7045 6 1582 711 288 37 22 chr1 130780862 130781135 -66414297 - L1MC LINE L1 -1831 4315 4039 6 1582 271 269 56 28 chr1 130781184 130781291 -66414141 - RMER12 LTR ERVK -466 856 747 6 1582 3121 161 124 5 chr1 130781291 130781922 -66413510 + RLTR25B LTR ERVK 1 706 -322 6 1582 1799 114 63 63 chr1 130781926 130782243 -66413189 - ORR1A3 LTR MaLR -8 318 2 6 1582 630 157 399 5 chr1 130782247 130782445 -66412987 + RLTR25B LTR ERVK 706 981 -47 6 1582 484 194 0 0 chr1 130782485 130782578 -66412854 - U6 snRNA snRNA 0 107 15 6 1582 266 286 12 0 chr1 130782722 130782806 -66412626 - MLT1B LTR MaLR -26 441 357 6 1582 1338 266 13 64 chr1 130782817 130783206 -66412226 - MTE2b LTR MaLR -4 375 7 6 1582 321 252 90 22 chr1 130783307 130783441 -66411991 - MLT1B LTR MaLR -240 150 8 6 1582 788 263 0 53 chr1 130783648 130783857 -66411575 + B3A SINE B2 1 198 0 7 1582 1029 229 43 13 chr1 130784261 130784491 -66410941 + MTE2b LTR MaLR 1 237 -142 7 1582 344 220 36 107 chr1 130784489 130784601 -66410831 + B3A SINE B2 95 198 0 7 1582 2705 46 9 3 chr1 130784651 130784976 -66410456 + IAPLTR2b LTR ERVK 1 327 0 7 1582 4315 83 12 40 chr1 130784977 130785732 -66409700 + IAPEz-int LTR ERVK 9 662 -5819 7 1582 917 52 26 0 chr1 130785732 130785848 -66409584 + IAPEz-int LTR ERVK 1359 1477 -5004 7 1582 1907 78 4 4 chr1 130785849 130786095 -66409337 + IAPEz-int LTR ERVK 2252 2497 -5183 7 1582 14437 65 9 8 chr1 130786093 130787917 -66407515 + IAPEz-int LTR ERVK 4655 6479 -2 7 1582 2698 46 9 3 chr1 130787919 130788244 -66407188 + IAPLTR2b LTR ERVK 1 327 0 7 1582 230 138 17 0 chr1 130788676 130788734 -66406698 + (TTAAA)n Simple_repeat Simple_repeat 1 59 0 7 1582 522 0 0 0 chr1 130788760 130788818 -66406614 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1582 819 233 83 14 chr1 130788946 130789241 -66406191 - Lx7 LINE L1 -330 5970 5638 7 1582 1228 40 0 28 chr1 130789261 130789441 -66405991 + (TCCC)n Simple_repeat Simple_repeat 3 177 0 7 1582 1036 100 29 0 chr1 130789458 130789598 -66405834 - B1_Mur4 SINE Alu -6 144 1 7 1582 216 67 0 0 chr1 130789700 130789730 -66405702 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 7 1582 372 22 0 0 chr1 130789825 130789870 -66405562 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1582 1911 262 26 20 chr1 130789870 130790353 -66405079 - Lx7 LINE L1 -383 7313 6826 7 1582 1660 292 83 89 chr1 130790427 130790720 -66404712 - Lx7 LINE L1 -688 5624 5274 7 1582 240 35 0 0 chr1 130790720 130790749 -66404683 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1582 1834 279 60 51 chr1 130790749 130791778 -66403654 - Lx7 LINE L1 -607 5273 4296 7 1582 714 280 70 9 chr1 130791899 130792126 -66403306 - B4A SINE B4 -50 242 2 7 1582 941 229 170 76 chr1 130793034 130793375 -66402057 + MTEa LTR MaLR 3 375 -4 7 1582 248 224 35 0 chr1 130793570 130793628 -66401804 + CT-rich Low_complexity Low_complexity 3 62 0 7 1582 376 219 40 50 chr1 130793636 130793737 -66401695 - B1F1 SINE Alu -8 141 42 7 1582 255 130 0 0 chr1 130793737 130793791 -66401641 + (T)n Simple_repeat Simple_repeat 1 54 0 7 1582 1137 75 7 0 chr1 130793792 130793938 -66401494 - B1_Mus2 SINE Alu 0 147 1 7 1582 264 318 18 9 chr1 130794101 130794212 -66401220 + MLT1A0 LTR MaLR 36 147 -218 7 1582 1008 247 62 4 chr1 130794220 130794492 -66400940 + B4 SINE B4 1 288 -4 7 1582 470 310 35 48 chr1 130794554 130794781 -66400651 + MLT1A0 LTR MaLR 142 365 0 7 1582 381 281 78 0 chr1 130795390 130795518 -66399914 + MTEa LTR MaLR 3 140 -239 7 1582 707 304 33 18 chr1 130795546 130795821 -66399611 + MT2A LTR ERVL 183 461 -72 7 1582 989 254 88 53 chr1 130795873 130796247 -66399185 - MTD LTR MaLR -8 411 25 7 1582 713 129 7 0 chr1 130796881 130797020 -66398412 + (TG)n Simple_repeat Simple_repeat 2 141 0 7 1582 717 12 0 0 chr1 130797022 130797104 -66398328 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1582 243 0 0 0 chr1 130798028 130798055 -66397377 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1582 829 247 30 72 chr1 130798096 130798401 -66397031 - B4 SINE B4 0 292 1 7 1582 639 273 0 83 chr1 130798423 130798639 -66396793 - B3A SINE B2 0 198 1 7 1582 200 235 15 0 chr1 130798922 130798990 -66396442 + (TATG)n Simple_repeat Simple_repeat 3 71 0 7 1582 333 0 0 0 chr1 130799052 130799089 -66396343 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 7 1582 257 333 95 0 chr1 130799159 130799264 -66396168 - B4 SINE B4 -174 118 4 7 1582 662 257 93 10 chr1 130799817 130800010 -66395422 + MTE2b LTR MaLR 1 209 -170 7 1582 23 0 0 0 chr1 130800012 130800035 -66395397 + AT_rich Low_complexity Low_complexity 1 23 0 7 1582 4740 286 78 31 chr1 130801038 130801275 -66394157 - L1_Mur3 LINE L1 -17 5863 5619 7 1582 234 0 0 0 chr1 130801275 130801301 -66394131 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1582 4740 286 78 31 chr1 130801301 130801640 -66393792 - L1_Mur3 LINE L1 -262 5618 5253 7 1582 450 0 0 0 chr1 130801640 130801690 -66393742 + (TTA)n Simple_repeat Simple_repeat 2 51 0 7 1582 4740 286 78 31 chr1 130801690 130803520 -66391912 - L1_Mur3 LINE L1 -628 5252 3345 7 1582 551 276 60 24 chr1 130803562 130803729 -66391703 + MTE2b LTR MaLR 205 377 -2 7 1582 610 277 316 0 chr1 130804019 130804307 -66391125 - MTE2b LTR MaLR 0 379 1 7 1582 1236 255 29 19 chr1 130805471 130805783 -66389649 - ORR1E LTR MaLR -44 315 1 7 1582 1703 105 36 6 chr1 130805783 130806078 -66389354 + ORR1A4 LTR MaLR 19 366 -8 7 1582 776 251 152 4 chr1 130806936 130807180 -66388252 + MTD LTR MaLR 1 280 -139 7 1582 466 237 68 0 chr1 130807354 130807472 -66387960 + MTD LTR MaLR 292 417 -2 7 1582 247 292 97 0 chr1 130807562 130807634 -66387798 - ID4_ SINE ID -4 79 1 7 1582 575 332 16 16 chr1 130807884 130808138 -66387294 + RMER15 LTR ERVL 280 533 -42 7 1582 1318 241 3 7 chr1 130808166 130808455 -66386977 + B4 SINE B4 1 288 -4 7 1582 210 91 0 0 chr1 130808580 130808613 -66386819 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1582 335 352 52 35 chr1 130808613 130808914 -66386518 - B4A SINE B4 -11 281 2 7 197 533 263 162 0 chr1 130809768 130809947 -66385485 - B4 SINE B4 -2 290 83 7 1583 387 0 0 0 chr1 130810759 130810802 -66384630 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1583 414 0 0 0 chr1 130810831 130810877 -66384555 + (GGAGA)n Simple_repeat Simple_repeat 1 46 0 7 1583 352 246 8 8 chr1 130811240 130811363 -66384069 + CT-rich Low_complexity Low_complexity 2 124 0 7 1583 438 341 48 24 chr1 130811434 130811644 -66383788 - B4A SINE B4 -75 217 3 7 1583 370 319 0 40 chr1 130811683 130811807 -66383625 - PB1D7 SINE Alu -1 119 1 7 1583 606 191 27 3 chr1 130812247 130812546 -66382886 + (TCCA)n Simple_repeat Simple_repeat 1 306 0 7 1583 530 295 84 21 chr1 130812552 130812791 -66382641 - L1MC4 LINE L1 -967 7075 6822 7 1583 306 231 43 11 chr1 130812808 130812900 -66382532 + CT-rich Low_complexity Low_complexity 1 95 0 7 1583 429 300 146 3 chr1 130812930 130813182 -66382250 - L1MC4 LINE L1 -1108 6774 6455 7 1583 21 0 0 0 chr1 130813781 130813802 -66381630 + AT_rich Low_complexity Low_complexity 1 21 0 7 1583 442 269 76 0 chr1 130813990 130814109 -66381323 - RSINE1 SINE B4 -33 132 5 7 1583 778 301 142 15 chr1 130814158 130814495 -66380937 - Lx8 LINE L1 -8 7465 7086 7 1583 691 336 19 19 chr1 130814570 130814840 -66380592 - Lx8 LINE L1 -598 6875 6606 7 1583 2513 75 14 20 chr1 130814908 130815264 -66380168 + L1Md_F2 LINE L1 6229 6582 0 7 1583 9031 189 75 16 chr1 130815273 130815923 -66379509 + Lx7 LINE L1 5490 6159 -1537 7 1583 6884 35 0 5 chr1 130815923 130816734 -66378698 + L1Md_A LINE L1 5775 6581 -1 7 1583 9031 188 82 18 chr1 130816734 130817863 -66377569 + Lx7 LINE L1 6160 7379 -317 7 1583 180 77 0 0 chr1 130817863 130817889 -66377543 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1583 9031 188 82 18 chr1 130817889 130818072 -66377360 + Lx7 LINE L1 7380 7580 -116 7 1583 1314 81 5 0 chr1 130818075 130818464 -66376968 + (TAGA)n Simple_repeat Simple_repeat 1 391 0 7 1583 346 257 0 9 chr1 130818470 130818580 -66376852 + Lx7 LINE L1 7578 7686 -10 7 1583 1228 41 0 0 chr1 130818594 130818741 -66376691 + B1_Mus1 SINE Alu 2 148 0 7 1583 459 213 0 27 chr1 130818764 130818875 -66376557 + ORR1D1 LTR MaLR 202 309 -65 7 1583 614 308 44 36 chr1 130818891 130819140 -66376292 + Lx8 LINE L1 6191 6441 -1032 7 1583 528 16 0 0 chr1 130819247 130819308 -66376124 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 7 1583 931 210 48 48 chr1 130819368 130819578 -66375854 - B3 SINE B2 -5 211 2 7 1583 327 309 87 22 chr1 130819609 130819794 -66375638 - HAL1 LINE L1 -776 1731 1535 7 1583 581 0 14 0 chr1 130819898 130819967 -66375465 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 7 1583 375 119 0 0 chr1 130819968 130820035 -66375397 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1583 232 120 137 20 chr1 130820035 130820086 -66375346 - RSINE1 SINE B4 -41 124 68 7 1583 213 226 0 19 chr1 130820104 130820158 -66375274 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1583 1739 118 128 23 chr1 130820468 130820773 -66374659 + L1_Mus2 LINE L1 6230 6566 0 7 1583 632 292 73 33 chr1 130822700 130822973 -66372459 + B4A SINE B4 2 285 -7 7 1583 28 0 0 0 chr1 130823187 130823215 -66372217 + AT_rich Low_complexity Low_complexity 1 28 0 7 1583 1867 141 150 43 chr1 130823215 130823814 -66371618 - Lx4A LINE L1 -1 7057 6457 7 1583 633 359 43 39 chr1 130823922 130824386 -66371046 + MLT2B2 LTR ERVL 6 471 -44 7 1583 226 217 68 102 chr1 130824532 130824650 -66370782 + RMER15 LTR ERVL 14 127 -448 7 1583 248 219 141 30 chr1 130824698 130824797 -66370635 + RMER15 LTR ERVL 289 398 -177 7 1583 769 304 152 20 chr1 130824887 130825189 -66370243 + ORR1D2 LTR MaLR 26 367 -3 7 1583 3158 31 0 0 chr1 130825218 130825572 -66369860 + IAPEY2_LTR LTR ERVK 1 354 -3 7 1583 320 45 23 0 chr1 130825727 130825771 -66369661 - ORR1A4 LTR MaLR 0 329 285 7 1583 553 167 0 0 chr1 130825775 130825865 -66369567 - MT2B LTR ERVL -476 125 36 7 1583 3092 161 108 23 chr1 130825808 130826458 -66368974 - ORR1A4-int LTR MaLR -1258 705 1 7 1583 1733 107 103 0 chr1 130826462 130826753 -66368679 - ORR1A4 LTR MaLR -8 321 1 7 1583 4455 198 36 78 chr1 130827222 130828218 -66367214 + RMER1B Other Other 2 943 -123 7 1583 581 0 14 0 chr1 130828218 130828287 -66367145 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 7 1583 4455 198 36 78 chr1 130828287 130828396 -66367036 + RMER1B Other Other 944 1060 -6 7 1583 1040 236 11 64 chr1 130828434 130828517 -66366915 - B4A SINE B4 -3 289 209 7 1583 2959 81 29 0 chr1 130828517 130828926 -66366506 + BGLII LTR ERVK 1 421 0 7 1583 1040 236 11 64 chr1 130828926 130829018 -66366414 - B4A SINE B4 -84 208 124 7 1583 2190 106 27 53 chr1 130829018 130829356 -66366076 - ORR1A4 LTR MaLR 0 329 1 7 1583 1040 236 11 64 chr1 130829356 130829446 -66365986 - B4A SINE B4 -169 123 37 7 1583 318 342 40 20 chr1 130830034 130830162 -66365270 + RMER15 LTR ERVL 410 543 -32 7 1583 1645 164 114 15 chr1 130830162 130830496 -66364936 + ORR1B2 LTR MaLR 1 367 0 7 1583 318 342 40 20 chr1 130830496 130830519 -66364913 + RMER15 LTR ERVL 544 564 -11 7 1583 242 338 0 0 chr1 130831324 130831398 -66364034 + (TATG)n Simple_repeat Simple_repeat 2 75 0 7 1583 767 235 120 0 chr1 130831401 130831584 -66363848 - B4 SINE B4 -86 206 2 7 1583 1124 204 22 22 chr1 130831610 130831835 -66363597 - URR1B DNA MER1_type 0 225 1 7 1583 348 301 0 0 chr1 130831888 130831971 -66363461 + ID4_ SINE ID 1 83 0 7 1583 5524 112 14 22 chr1 130832085 130832932 -66362500 - Lx2 LINE L1 -4 6993 6154 7 1583 531 211 75 8 chr1 130832932 130833066 -66362366 + MTE2a LTR MaLR 235 377 -2 7 1583 1708 214 98 18 chr1 130833501 130833703 -66361729 - Lx5 LINE L1 -5 7045 6820 7 1583 297 51 0 0 chr1 130833703 130833742 -66361690 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 7 1583 1708 214 98 18 chr1 130833742 130833939 -66361493 - Lx5 LINE L1 -231 6819 6615 7 1583 9383 137 9 44 chr1 130833933 130835661 -66359771 - L1_Mur1 LINE L1 -2554 3323 1633 7 1583 1100 57 50 0 chr1 130835661 130835801 -66359631 - B1_Mm SINE Alu 0 147 1 7 1583 7639 200 61 59 chr1 130835801 130835952 -66359480 - L1_Mur1 LINE L1 -4248 1632 1479 7 1583 760 83 0 0 chr1 130835952 130836060 -66359372 - B2_Mm2 SINE B2 -86 109 2 8 1583 7639 200 61 59 chr1 130836060 130836493 -66358939 - L1_Mur1 LINE L1 -4248 1478 1036 7 1583 4142 118 0 2 chr1 130836734 130837348 -66358084 - L1_Mm LINE L1 -1536 4347 3735 8 1583 555 303 108 102 chr1 130837679 130837822 -66357610 + MTD LTR MaLR 45 213 -206 8 1583 279 0 0 0 chr1 130837822 130837853 -66357579 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8 1583 555 303 108 102 chr1 130837853 130837898 -66357534 + MTD LTR MaLR 214 257 -162 8 1583 4811 67 6 2 chr1 130837898 130838523 -66356909 - L1_Mus2 LINE L1 -1 6565 5938 8 1583 555 303 108 102 chr1 130838523 130838704 -66356728 + MTD LTR MaLR 258 417 -2 8 1583 207 287 0 0 chr1 130839836 130839930 -66355502 + (CATATA)n Simple_repeat Simple_repeat 1 94 0 8 1583 1168 239 52 4 chr1 130839977 130840246 -66355186 + MTE2b LTR MaLR 2 283 -96 8 1583 250 253 49 25 chr1 130840292 130840373 -66355059 - RMER30 DNA MER1_type -31 171 89 8 1583 707 218 123 0 chr1 130840385 130840555 -66354877 - B3A SINE B2 -7 191 1 8 1583 198 71 0 0 chr1 130840567 130840595 -66354837 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 8 1583 314 232 0 80 chr1 130840617 130840692 -66354740 - RMER30 DNA MER1_type -132 70 2 8 1583 699 249 87 34 chr1 130841768 130841789 -66353643 - ID_B1 SINE B4 -1 223 209 8 1583 1588 228 48 41 chr1 130841789 130842205 -66353227 + MTD LTR MaLR 1 419 0 8 1583 699 249 87 34 chr1 130842205 130842391 -66353041 - ID_B1 SINE B4 -16 208 5 8 1583 180 0 0 0 chr1 130842477 130842497 -66352935 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1583 180 111 0 0 chr1 130842502 130842529 -66352903 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1583 2187 26 124 4 chr1 130842533 130842808 -66352624 - L1_Mus1 LINE L1 0 6567 6260 8 1583 324 268 80 0 chr1 130842837 130842949 -66352483 - MTE-int LTR MaLR -95 1485 1365 8 1583 1494 147 58 70 chr1 130843045 130843374 -66352058 + ORR1C2 LTR MaLR 1 325 -59 8 1583 4459 41 2 7 chr1 130843374 130843920 -66351512 - L1Md_F2 LINE L1 0 6582 6040 8 1583 449 227 0 52 chr1 130844055 130844171 -66351261 - ID_B1 SINE B4 0 224 115 8 1583 663 48 0 0 chr1 130844744 130844827 -66350605 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1583 469 210 165 24 chr1 130844856 130844983 -66350449 - B4 SINE B4 -82 210 66 8 1583 1268 249 11 19 chr1 130845477 130845838 -66349594 - Tigger8 DNA MER2_type -114 552 195 8 1583 222 136 0 0 chr1 130846198 130846242 -66349190 + (TATG)n Simple_repeat Simple_repeat 2 45 0 8 1583 595 133 42 4 chr1 130846239 130846520 -66348912 + (TCTA)n Simple_repeat Simple_repeat 1 291 0 8 1583 277 281 33 89 chr1 130846557 130846647 -66348785 - B1F SINE Alu -64 85 1 8 1583 742 232 180 39 chr1 130846675 130846958 -66348474 + ORR1D2 LTR MaLR 22 344 -26 8 1583 415 33 0 32 chr1 130846958 130847021 -66348411 + (CAA)n Simple_repeat Simple_repeat 3 63 0 8 1583 288 0 0 0 chr1 130848230 130848262 -66347170 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1583 402 262 90 82 chr1 130848768 130848875 -66346557 + MER45B DNA Tip100 790 904 -136 8 1583 279 0 0 0 chr1 130848875 130848906 -66346526 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1583 402 262 90 82 chr1 130848906 130849043 -66346389 + MER45B DNA Tip100 905 1036 -4 8 1583 4042 49 0 2 chr1 130849252 130849739 -66345693 + L1_Mus1 LINE L1 6082 6567 0 8 1583 1921 154 54 6 chr1 130850327 130850661 -66344771 - Lx2A1 LINE L1 0 7008 6659 8 1583 342 297 54 7 chr1 130850685 130850834 -66344598 - RMER15 LTR ERVL -15 560 405 8 1583 324 323 35 76 chr1 130850978 130851149 -66344283 - RMER15 LTR ERVL -137 438 275 8 1583 21 36 0 0 chr1 130851315 130851343 -66344089 + AT_rich Low_complexity Low_complexity 1 28 0 8 1583 697 217 20 0 chr1 130851345 130851497 -66343935 - Lx6 LINE L1 -3 7457 7303 8 1583 3550 45 0 0 chr1 130851493 130851918 -66343514 + L1_Mus1 LINE L1 6143 6567 0 8 1583 2782 200 68 4 chr1 130851926 130852458 -66342974 - Lx6 LINE L1 -136 7324 6759 8 1583 1821 221 8 11 chr1 130852507 130852869 -66342563 - Lx6 LINE L1 -686 6774 6414 8 1583 187 233 200 0 chr1 130853069 130853129 -66342303 + MIRc SINE MIR 110 181 -87 8 1583 574 268 16 6 chr1 130853588 130853806 -66341626 - L1MA5A LINE L1 -430 5867 5643 8 1583 1237 227 117 9 chr1 130853911 130854235 -66341197 + ORR1E LTR MaLR 1 359 0 8 1583 426 257 35 9 chr1 130854559 130854673 -66340759 - PB1D9 SINE Alu 0 120 4 8 1583 420 272 123 12 chr1 130854752 130854923 -66340509 - MT2A LTR ERVL 0 533 344 8 1583 673 267 33 0 chr1 130854977 130855157 -66340275 + MTC LTR MaLR 199 384 -37 8 1583 1063 185 224 62 chr1 130855613 130856029 -66339403 + RMER4B LTR ERVK 94 576 -9 8 1583 745 192 40 111 chr1 130856038 130856237 -66339195 - B4 SINE B4 0 292 108 8 1583 919 252 49 38 chr1 130856651 130856915 -66338517 - B4A SINE B4 -25 267 1 8 1583 901 277 37 15 chr1 130857854 130858125 -66337307 - B4A SINE B4 -14 278 2 8 1583 612 354 165 8 chr1 130858145 130858587 -66336845 + MLT2B3 LTR ERVL 1 518 -36 8 1583 488 30 0 15 chr1 130858587 130858654 -66336778 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 8 1583 612 354 165 8 chr1 130858654 130858690 -66336742 + MLT2B3 LTR ERVL 519 554 0 8 1583 244 200 67 0 chr1 130859146 130859206 -66336226 + MER31B LTR ERV1 13 76 -390 8 1583 482 240 21 0 chr1 130859203 130859299 -66336133 + PB1D10 SINE Alu 10 107 -10 8 1583 452 273 76 25 chr1 130859301 130859459 -66335973 + MER67A LTR ERV1 92 257 -286 8 1583 283 238 180 0 chr1 130859530 130859652 -66335780 + MER67A LTR ERV1 388 531 -12 8 1583 1555 239 16 19 chr1 130859966 130860337 -66335095 + MTEa LTR MaLR 2 371 -8 8 1583 417 86 0 0 chr1 130860410 130860468 -66334964 + (CATA)n Simple_repeat Simple_repeat 2 59 0 8 1583 180 0 0 0 chr1 130860538 130860558 -66334874 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1583 544 285 117 84 chr1 130860560 130860809 -66334623 - B4 SINE B4 -35 257 1 8 1583 1311 57 8 8 chr1 130861330 130861580 -66333852 + (TCTA)n Simple_repeat Simple_repeat 1 250 0 8 1583 1528 207 79 57 chr1 130861595 130862000 -66333432 - MTC LTR MaLR -7 414 1 8 1583 1061 16 8 0 chr1 130862012 130862139 -66333293 + (TCTA)n Simple_repeat Simple_repeat 1 128 0 8 1583 831 285 15 0 chr1 130862161 130862361 -66333071 - ID_B1 SINE B4 -20 204 2 8 1583 1531 53 11 0 chr1 130862379 130862568 -66332864 - B2_Mm1t SINE B2 -1 192 2 8 1583 959 248 142 15 chr1 130862571 130862895 -66332537 - ORR1D1 LTR MaLR -9 365 1 8 1583 267 79 0 0 chr1 130863244 130863282 -66332150 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1583 265 277 0 78 chr1 130863288 130863429 -66332003 - MamRep434 DNA TcMar -184 242 113 8 1583 796 293 36 0 chr1 130863668 130863890 -66331542 + B4A SINE B4 3 232 -60 8 1583 226 324 0 0 chr1 130863920 130863991 -66331441 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 1583 956 206 370 57 chr1 130864346 130864711 -66330721 + MT2A LTR ERVL 1 493 -40 8 1583 237 119 0 0 chr1 130864711 130864753 -66330679 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1583 956 206 370 57 chr1 130864753 130864793 -66330639 + MT2A LTR ERVL 494 533 0 8 1583 1458 245 122 21 chr1 130864796 130865329 -66330103 - L1MA4 LINE L1 -373 5927 5341 8 1583 798 251 113 30 chr1 130865378 130865715 -66329717 - L1M2 LINE L1 -525 5766 5402 8 1583 272 326 132 0 chr1 130866647 130866791 -66328641 + Lx8 LINE L1 7039 7201 -272 8 1583 427 312 32 0 chr1 130867021 130867175 -66328257 + RMER15 LTR ERVL 406 564 -11 8 1583 243 125 0 0 chr1 130867269 130867309 -66328123 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 8 1583 820 193 21 0 chr1 130867327 130867472 -66327960 - B3 SINE B2 -5 211 64 8 1583 1447 275 42 23 chr1 130868075 130868593 -66326839 + MLT2B4 LTR ERVL 1 528 -28 8 1583 297 0 0 0 chr1 130868624 130868657 -66326775 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1583 594 252 50 43 chr1 130868658 130868799 -66326633 - RSINE1 SINE B4 -22 143 2 8 1583 735 152 112 48 chr1 130868854 130869041 -66326391 + ID_B1 SINE B4 3 201 -23 8 1583 546 29 0 0 chr1 130869548 130869616 -66325816 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1583 317 131 16 0 chr1 130870299 130870360 -66325072 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1583 282 375 50 53 chr1 130870886 130871207 -66324225 - MLT1E1A LTR MaLR 0 680 361 8 1583 1936 179 71 0 chr1 130871877 130872230 -66323202 + ORR1C1 LTR MaLR 1 378 0 8 1583 382 343 58 14 chr1 130872507 130872714 -66322718 + L1MD2 LINE L1 5679 5894 -465 8 1583 393 217 132 0 chr1 130872714 130872820 -66322612 + B4 SINE B4 4 123 -169 8 1583 3162 118 0 26 chr1 130873466 130873962 -66321470 + Lx3A LINE L1 6499 6981 0 8 1583 1279 181 31 59 chr1 130873966 130874253 -66321179 + ORR1D1 LTR MaLR 96 374 0 8 1583 6175 207 33 13 chr1 130874254 130875596 -66319836 + ORR1D1-int LTR MaLR 2 1370 0 8 1583 1933 167 25 0 chr1 130875596 130875956 -66319476 + ORR1D1 LTR MaLR 1 369 -5 8 1583 1101 241 122 20 chr1 130876486 130876829 -66318603 - MTEa LTR MaLR -1 378 1 8 1583 477 242 175 0 chr1 130877981 130878101 -66317331 - B1_Mur1 SINE Alu -8 141 1 8 1583 446 202 12 12 chr1 130878143 130878308 -66317124 + (TG)n Simple_repeat Simple_repeat 2 166 0 8 1583 1095 276 37 55 chr1 130878548 130878931 -66316501 - MTEa LTR MaLR -2 377 2 8 1583 236 298 40 40 chr1 130879385 130879511 -66315921 + MLT1A1 LTR MaLR 271 396 -12 8 1583 765 254 17 61 chr1 130879565 130879654 -66315778 + B4 SINE B4 8 89 -203 8 1583 1249 254 62 27 chr1 130879654 130880055 -66315377 + MTD LTR MaLR 5 419 0 8 1583 765 254 17 61 chr1 130880055 130880196 -66315236 + B4 SINE B4 90 228 -64 8 1583 975 204 24 9 chr1 130880196 130880409 -66315023 + B3 SINE B2 1 216 0 8 1583 528 223 33 0 chr1 130880528 130880649 -66314783 + Lx9 LINE L1 7399 7523 -121 8 1583 270 213 104 24 chr1 130880674 130880799 -66314633 + Lx9 LINE L1 7476 7610 -34 8 1583 237 344 0 0 chr1 130880870 130880934 -66314498 + B4 SINE B4 221 284 -8 8 1583 716 342 70 15 chr1 130881679 130881949 -66313483 - B4A SINE B4 -2 290 6 8 1583 214 29 0 54 chr1 130882731 130882768 -66312664 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 8 1583 1400 289 20 3 chr1 130882821 130883175 -66312257 + MTEa LTR MaLR 6 365 -14 8 1583 461 302 133 36 chr1 130883346 130883503 -66311929 - MTC LTR MaLR -34 387 212 8 1583 6455 44 0 4 chr1 130883503 130884276 -66311156 - L1Md_T LINE L1 0 6582 5813 8 1583 461 302 133 36 chr1 130884276 130884396 -66311036 - MTC LTR MaLR -210 211 84 8 1583 352 240 164 42 chr1 130884436 130884649 -66310783 + MIR SINE MIR 14 252 -10 9 1583 676 224 26 62 chr1 130884911 130885106 -66310326 - B2_Mm2 SINE B2 -3 192 5 9 1583 204 225 0 0 chr1 130885133 130885173 -66310259 + (TATG)n Simple_repeat Simple_repeat 2 41 0 9 1583 480 280 1 24 chr1 130885174 130885320 -66310112 - B3A SINE B2 -13 203 65 9 1583 204 40 0 0 chr1 130885320 130885345 -66310087 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 9 1583 787 304 34 11 chr1 130885546 130885809 -66309623 + B4A SINE B4 2 270 -22 9 1583 209 292 42 0 chr1 130886573 130886645 -66308787 + MIRm SINE MIR 202 276 0 9 1583 1029 87 7 0 chr1 130886859 130887009 -66308423 - L1_Mus2 LINE L1 -1 6565 6415 9 1583 1364 208 71 23 chr1 130887064 130887418 -66308014 + MTEb LTR MaLR 1 371 -8 9 1583 313 331 28 14 chr1 130887420 130887564 -66307868 + MIRb SINE MIR 123 268 0 9 1583 726 282 10 39 chr1 130888221 130888424 -66307008 - ID_B1 SINE B4 -4 220 24 9 1583 222 62 0 0 chr1 130889305 130889337 -66306095 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 1583 254 172 31 0 chr1 130889420 130889484 -66305948 + (TATG)n Simple_repeat Simple_repeat 3 68 0 9 1583 225 0 0 0 chr1 130889496 130889521 -66305911 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1583 779 236 16 42 chr1 130889521 130889711 -66305721 - B4A SINE B4 0 292 108 9 1583 879 209 96 5 chr1 130889739 130889927 -66305505 - B3 SINE B2 -3 213 9 9 1583 884 231 52 9 chr1 130890727 130890937 -66304495 - MTEa LTR MaLR 0 379 161 9 1583 425 253 231 65 chr1 130891986 130892233 -66303199 - MER2 DNA MER2_type 0 345 58 9 1583 867 297 13 22 chr1 130892267 130892491 -66302941 - ID_B1 SINE B4 -2 222 1 9 1583 210 371 52 13 chr1 130892824 130892977 -66302455 + MIRb SINE MIR 81 239 -29 9 1583 5121 197 116 10 chr1 130893455 130893549 -66301883 - Lx9 LINE L1 -8 7636 7525 9 1583 297 0 0 0 chr1 130893549 130893582 -66301850 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1583 5121 197 116 10 chr1 130893582 130893608 -66301824 - Lx9 LINE L1 -120 7524 7444 9 1583 2632 163 12 37 chr1 130893608 130894040 -66301392 - MTC LTR MaLR 0 421 1 9 1583 5121 197 116 10 chr1 130894040 130895008 -66300424 - Lx9 LINE L1 -201 7443 6434 9 1583 454 298 97 75 chr1 130895119 130895387 -66300045 + B4 SINE B4 1 274 -18 9 1583 319 310 169 17 chr1 130895954 130896131 -66299301 - Charlie8 DNA MER1_type -2166 262 59 9 1583 1110 272 58 14 chr1 130896411 130896773 -66298659 - MTEa LTR MaLR 0 379 2 9 1583 424 284 143 72 chr1 130897359 130897568 -66297864 + B4 SINE B4 46 269 -23 9 1583 393 22 0 0 chr1 130897572 130897618 -66297814 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1583 414 0 0 0 chr1 130897980 130898026 -66297406 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1583 243 0 0 0 chr1 130898226 130898253 -66297179 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1583 675 133 0 36 chr1 130898254 130898394 -66297038 + GA-rich Low_complexity Low_complexity 3 137 0 9 1583 723 259 89 31 chr1 130898436 130898627 -66296805 - B4A SINE B4 -90 202 1 9 1583 224 313 262 35 chr1 130899491 130899780 -66295652 - L2b LINE L2 -2 3424 3044 9 1583 588 14 0 0 chr1 130899780 130899849 -66295583 + (GA)n Simple_repeat Simple_repeat 1 69 0 9 1583 224 323 153 21 chr1 130899849 130899956 -66295476 - L2b LINE L2 -332 3043 2937 9 1583 347 305 82 44 chr1 130900300 130900482 -66294950 - MLT2B1 LTR ERVL 0 562 374 9 1583 329 252 17 17 chr1 130900526 130900770 -66294662 + GA-rich Low_complexity Low_complexity 1 244 0 9 1583 360 282 102 41 chr1 130900804 130901000 -66294432 - MLT2B1 LTR ERVL -312 208 1 9 1583 754 296 75 38 chr1 130901193 130901593 -66293839 + L1ME3A LINE L1 5579 5993 -180 9 1583 414 298 158 63 chr1 130902013 130902267 -66293165 - B4 SINE B4 -13 279 2 9 1583 349 319 95 43 chr1 130903309 130903519 -66291913 + MLT1L LTR MaLR 345 565 -45 9 1583 668 305 201 25 chr1 130904065 130904543 -66290889 - RMER15 LTR ERVL 0 575 14 9 1583 450 328 8 0 chr1 130905088 130905219 -66290213 + Lx8 LINE L1 7164 7295 -178 9 1583 210 143 71 0 chr1 130905299 130905369 -66290063 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 9 1583 7691 143 37 221 chr1 130905455 130906986 -66288446 + Lx5 LINE L1 2439 3482 -2395 9 1583 383 52 17 0 chr1 130906986 130907044 -66288388 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 9 1583 7691 143 37 221 chr1 130907044 130908010 -66287422 + Lx5 LINE L1 3483 4476 -1401 9 1583 32686 95 29 22 chr1 130908005 130910280 -66285152 + Lx4B LINE L1 377 2657 -3226 9 1583 1189 58 0 0 chr1 130910280 130910418 -66285014 - B1_Mus2 SINE Alu -8 139 2 9 1583 32686 86 9 34 chr1 130910418 130911255 -66284177 + Lx4B LINE L1 2658 3476 -2407 9 1583 189 0 0 0 chr1 130911255 130911276 -66284156 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9 1583 32686 86 9 34 chr1 130911276 130913359 -66282073 + Lx4B LINE L1 3477 5584 -299 9 1583 7977 62 30 3 chr1 130913359 130914327 -66281105 + L1Md_F2 LINE L1 5587 6580 -2 9 1583 32686 151 13 23 chr1 130914327 130915875 -66279557 + Lx4B LINE L1 5585 7053 -5 9 1583 603 0 0 0 chr1 130915944 130916011 -66279421 + (GA)n Simple_repeat Simple_repeat 1 67 0 9 1583 4357 162 49 30 chr1 130916012 130916420 -66279012 + Lx5 LINE L1 5021 5439 -438 9 1583 183 42 0 0 chr1 130916420 130916444 -66278988 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1583 4357 196 72 20 chr1 130916444 130917356 -66278076 + Lx5 LINE L1 5440 6403 -647 9 1583 617 286 47 42 chr1 130917916 130918131 -66277301 - B3A SINE B2 0 216 1 9 1583 276 311 75 69 chr1 130918301 130918460 -66276972 - MIRb SINE MIR -14 254 95 9 1583 325 319 151 57 chr1 130918510 130918809 -66276623 + MLT1I LTR MaLR 65 391 -20 9 1583 240 111 0 0 chr1 130918843 130918879 -66276553 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 9 1583 471 113 0 0 chr1 130918894 130918965 -66276467 + (TATG)n Simple_repeat Simple_repeat 4 74 0 9 1583 909 342 19 4 chr1 130918979 130919249 -66276183 - B4 SINE B4 -13 279 6 9 1583 201 359 112 29 chr1 130919381 130919728 -66275704 - L3 LINE CR1 -344 4145 3770 9 1583 1769 222 111 2 chr1 130919974 130920031 -66275401 + Lx9 LINE L1 6910 6966 -678 9 1583 573 64 0 0 chr1 130920031 130920109 -66275323 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1583 1769 222 111 2 chr1 130920109 130920476 -66274956 + Lx9 LINE L1 6967 7380 -264 9 1583 9994 92 54 7 chr1 130920492 130922569 -66272863 + L1VL4 LINE L1 198 2367 -1192 9 1583 7953 86 17 6 chr1 130922567 130924100 -66271332 + L1_Mus3 LINE L1 5071 6632 -6 9 1583 5746 85 44 5 chr1 130924097 130924900 -66270532 + L1VL4 LINE L1 2687 3523 -36 9 1583 3582 32 5 7 chr1 130924900 130925308 -66270124 - L1Md_F3 LINE L1 -3 6581 6175 9 1583 5746 85 44 5 chr1 130925308 130925339 -66270093 + L1VL4 LINE L1 3524 3554 -5 9 1583 355 171 48 12 chr1 130925343 130925426 -66270006 + Lx9 LINE L1 7398 7483 -161 9 1583 598 105 48 16 chr1 130925428 130925554 -66269878 + CT-rich Low_complexity Low_complexity 1 130 0 9 1583 552 134 0 0 chr1 130925557 130925654 -66269778 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1583 2296 145 29 3 chr1 130925655 130926029 -66269403 - ORR1B1 LTR MaLR -8 386 3 9 1583 608 300 69 93 chr1 130926034 130926122 -66269310 - B4 SINE B4 -8 284 220 9 1583 612 27 0 0 chr1 130926122 130926196 -66269236 + (TCTTG)n Simple_repeat Simple_repeat 2 75 0 9 1583 608 300 69 93 chr1 130926196 130926397 -66269035 - B4 SINE B4 -73 219 2 9 1583 860 258 16 0 chr1 130926407 130926601 -66268831 - ID_B1 SINE B4 -2 222 26 9 1583 28 0 0 0 chr1 130926601 130926629 -66268803 + AT_rich Low_complexity Low_complexity 1 28 0 9 1583 587 239 34 112 chr1 130926789 130926823 -66268609 - RSINE1 SINE B4 0 165 145 9 1583 246 81 0 0 chr1 130926823 130926860 -66268572 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1583 587 239 34 112 chr1 130926860 130927004 -66268428 - RSINE1 SINE B4 -21 144 1 9 1583 225 94 0 0 chr1 130927007 130927039 -66268393 + (TA)n Simple_repeat Simple_repeat 2 33 0 9 1583 339 330 95 18 chr1 130927184 130927406 -66268026 - L3 LINE CR1 -729 3760 3522 9 1583 316 278 30 20 chr1 130927591 130927690 -66267742 - L3 LINE CR1 -2245 2244 2145 9 1583 435 38 0 0 chr1 130929483 130929536 -66265896 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 9 1583 691 322 19 113 chr1 130929574 130929893 -66265539 - B4A SINE B4 -3 289 1 9 1583 845 251 38 10 chr1 130929914 130930123 -66265309 - B3 SINE B2 0 216 2 9 1583 182 255 0 21 chr1 130930275 130930323 -66265109 + L2a LINE L2 3376 3422 -4 9 1583 651 267 284 22 chr1 130931000 130931300 -66264132 + MTE2b LTR MaLR 1 379 0 9 1583 780 82 0 0 chr1 130931690 130931812 -66263620 + (GA)n Simple_repeat Simple_repeat 1 122 0 9 1583 1174 179 84 35 chr1 130932036 130932297 -66263135 + RLTR46 LTR ERVK 42 315 -5 9 1583 1842 216 60 27 chr1 130932304 130932818 -66262614 - L1VL4 LINE L1 -5513 789 259 9 1583 714 283 80 6 chr1 130933323 130933659 -66261773 - L1MA7 LINE L1 -226 6065 5703 9 1583 230 232 48 12 chr1 130933656 130933739 -66261693 + L1M2 LINE L1 5186 5271 -872 9 1583 358 326 45 8 chr1 130933736 130933869 -66261563 + Lx9 LINE L1 5865 6002 -1642 9 1583 1191 133 0 0 chr1 130934014 130934271 -66261161 + (TA)n Simple_repeat Simple_repeat 1 257 0 9 1583 3090 271 91 43 chr1 130934291 130935344 -66260088 + Lx9 LINE L1 6240 7341 -303 9 1583 576 0 0 0 chr1 130935344 130935408 -66260024 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1583 3090 271 91 43 chr1 130935408 130935624 -66259808 + Lx9 LINE L1 7342 7569 -75 9 1583 516 84 0 0 chr1 130935744 130935827 -66259605 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 9 1583 180 0 0 0 chr1 130935830 130935850 -66259582 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1583 493 296 97 18 chr1 130935864 130936091 -66259341 + L1M2 LINE L1 5350 5594 -697 9 1583 565 197 128 0 chr1 130936154 130936271 -66259161 + ID_B1 SINE B4 83 214 -10 9 1583 312 27 0 0 chr1 130936660 130936697 -66258735 + (CGTG)n Simple_repeat Simple_repeat 2 38 0 9 1583 502 325 49 68 chr1 130938200 130938405 -66257027 - B4A SINE B4 -5 287 87 9 1583 283 325 110 76 chr1 130939027 130939317 -66256115 - RMER15 LTR ERVL -1 574 275 9 1583 3428 46 5 2 chr1 130939414 130939809 -66255623 + MTA_Mm LTR MaLR 1 396 0 9 1583 206 366 114 18 chr1 130939990 130940104 -66255328 + L2c LINE L2 3252 3376 -11 9 1583 456 216 215 6 chr1 130940389 130940552 -66254880 + Lx8 LINE L1 7274 7470 -3 9 1583 4063 222 61 29 chr1 130940587 130940602 -66254830 - Lx5 LINE L1 0 7050 7035 9 1583 249 33 0 0 chr1 130940602 130940632 -66254800 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 9 197 4063 222 61 29 chr1 130940632 130941579 -66253853 - Lx5 LINE L1 -16 7034 6057 9 1584 1136 151 0 31 chr1 130941922 130942114 -66253318 + B2_Mm2 SINE B2 3 188 -7 9 1584 414 0 0 0 chr1 130942168 130942214 -66253218 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 9 1584 300 70 0 0 chr1 130942970 130943013 -66252419 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1584 470 299 176 21 chr1 130943022 130943261 -66252171 - B4A SINE B4 -16 276 1 1 1584 514 339 45 45 chr1 130943888 130944175 -66251257 + B4A SINE B4 5 291 -1 1 1584 432 55 0 0 chr1 130944178 130944233 -66251199 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1584 282 268 158 55 chr1 130945356 130945502 -66249930 + MARNA DNA Mariner 298 458 -128 1 1584 510 152 0 0 chr1 130945774 130945866 -66249566 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 1 1584 220 250 0 0 chr1 130945869 130945913 -66249519 + (CCCA)n Simple_repeat Simple_repeat 2 45 0 1 1584 1851 166 87 23 chr1 130945946 130946291 -66249141 + ORR1B2 LTR MaLR 1 367 0 1 1584 1388 218 116 6 chr1 130947522 130947859 -66247573 + MTD LTR MaLR 1 374 -45 1 1584 578 291 15 55 chr1 130947904 130948104 -66247328 - B3A SINE B2 -5 193 2 1 1584 240 331 62 14 chr1 130948171 130948237 -66247195 + MIRc SINE MIR 11 80 -188 1 1584 1202 197 5 9 chr1 130948237 130948452 -66246980 - B3 SINE B2 -1 215 2 1 1584 240 317 82 22 chr1 130948452 130948569 -66246863 + MIRc SINE MIR 81 207 -61 1 1584 348 60 0 57 chr1 130949327 130949380 -66246052 - HAL1-3A_ME LINE L1 -845 2013 1964 1 1584 309 333 10 10 chr1 130949401 130949504 -66245928 - PB1D10 SINE Alu -5 112 10 1 1584 198 143 0 0 chr1 130949977 130950012 -66245420 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1584 242 231 0 0 chr1 130950029 130950068 -66245364 - B4A SINE B4 -252 40 2 1 1584 277 265 0 35 chr1 130950437 130950523 -66244909 - MER20 DNA MER1_type -3 216 134 1 1584 560 315 69 73 chr1 130950542 130950830 -66244602 + B4A SINE B4 6 292 0 1 1584 230 57 0 0 chr1 130950935 130950970 -66244462 + L1_Mus2 LINE L1 6532 6566 0 1 1584 260 288 15 0 chr1 130951059 130951125 -66244307 - MER20 DNA MER1_type -152 67 1 1 1584 287 229 0 0 chr1 130951274 130951322 -66244110 - B1_Mus2 SINE Alu -99 48 1 1 1584 396 0 0 0 chr1 130951394 130951438 -66243994 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1584 840 289 20 15 chr1 130951462 130951659 -66243773 - B4 SINE B4 -20 272 75 1 1584 3389 252 107 14 chr1 130951672 130952733 -66242699 + Lx6 LINE L1 6059 7438 -22 1 1584 629 25 0 12 chr1 130953388 130953468 -66241964 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 1 1584 497 243 0 0 chr1 130954340 130954443 -66240989 + MLT1C LTR MaLR 6 108 -359 1 1584 238 281 15 15 chr1 130954464 130954529 -66240903 - Tigger7 DNA MER2_type -22 2469 2405 1 1584 541 320 53 187 chr1 130954497 130954855 -66240577 - Tigger7 DNA MER2_type -2179 312 3 1 1584 378 0 0 0 chr1 130955176 130955218 -66240214 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1584 361 281 50 157 chr1 130955233 130955324 -66240108 - B4 SINE B4 -55 237 142 1 1584 2444 35 0 17 chr1 130955324 130955612 -66239820 + L1Md_F3 LINE L1 6290 6572 -12 1 1584 361 281 50 157 chr1 130955612 130955718 -66239714 - B4 SINE B4 -151 141 61 1 1584 541 298 98 47 chr1 130955724 130955939 -66239493 - B4 SINE B4 -65 227 2 1 1584 359 266 140 12 chr1 130955965 130956136 -66239296 + Charlie5 DNA MER1_type 2427 2619 -5 1 1584 1267 268 42 18 chr1 130956442 130956776 -66238656 - ORR1E LTR MaLR -16 343 2 1 1584 511 300 138 141 chr1 130957473 130957764 -66237668 + B4 SINE B4 3 292 0 1 1584 588 125 0 0 chr1 130957775 130957871 -66237561 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1584 243 103 0 0 chr1 130957892 130957931 -66237501 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1584 328 143 0 18 chr1 130957936 130957993 -66237439 + HAL1-3A_ME LINE L1 1963 2018 -840 1 1584 387 0 0 0 chr1 130957996 130958039 -66237393 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1584 987 167 172 0 chr1 130958481 130958673 -66236759 + URR1B DNA MER1_type 1 225 0 1 1584 5948 232 80 25 chr1 130958700 130958949 -66236483 + Lx6 LINE L1 5925 6162 -1298 1 1584 351 0 0 0 chr1 130958949 130958988 -66236444 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1584 5948 232 80 25 chr1 130958988 130960194 -66235238 + Lx6 LINE L1 6163 7459 -1 1 1584 535 312 16 0 chr1 130960198 130960323 -66235109 + B3A SINE B2 27 153 -45 1 1584 270 0 0 0 chr1 130960391 130960421 -66235011 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1584 2686 137 81 75 chr1 130960979 130961538 -66233894 - RMER4B LTR ERVK 0 585 24 1 1584 417 245 70 35 chr1 130962417 130962531 -66232901 + Lx8 LINE L1 7232 7349 -124 1 1584 321 26 0 0 chr1 130962577 130962615 -66232817 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1584 345 331 149 51 chr1 130962664 130962839 -66232593 - B4A SINE B4 -100 192 1 1 1584 272 356 81 6 chr1 130963791 130963952 -66231480 + L4 LINE RTE 1578 1750 -279 1 1584 23 33 0 0 chr1 130964115 130964145 -66231287 + AT_rich Low_complexity Low_complexity 1 30 0 1 1584 904 299 58 4 chr1 130964831 130965073 -66230359 - B4 SINE B4 -1 291 37 1 1584 842 296 118 42 chr1 130965086 130965418 -66230014 - MTD LTR MaLR -14 405 49 1 1584 2055 165 92 0 chr1 130966501 130966858 -66228574 + RMER19B LTR ERVK 501 890 -12 1 1584 522 46 0 0 chr1 130967291 130967356 -66228076 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 1 1584 1192 65 0 0 chr1 130967377 130967516 -66227916 - B1_Mm SINE Alu -8 139 1 1 1584 627 300 127 60 chr1 130968117 130968533 -66226899 - MER20B DNA MER1_type -88 695 252 1 1584 478 316 19 32 chr1 130968533 130968687 -66226745 + ID_B1 SINE B4 2 153 -71 1 1584 832 284 29 14 chr1 130968693 130968968 -66226464 - RMER5 LTR ERV1 -15 519 241 1 1584 269 279 9 43 chr1 130969516 130969632 -66225800 - Lx5 LINE L1 -8 7042 6931 1 1584 784 202 70 38 chr1 130969650 130969835 -66225597 + Lx5 LINE L1 6697 6887 -163 1 1584 614 276 7 19 chr1 130969867 130970022 -66225410 + B3A SINE B2 1 153 -45 1 1584 383 83 17 0 chr1 130970033 130970093 -66225339 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1584 334 269 6 158 chr1 130971610 130971787 -66223645 - MIRb SINE MIR -57 211 62 1 1584 348 24 0 0 chr1 130972056 130972097 -66223335 + (TAG)n Simple_repeat Simple_repeat 3 43 0 1 1584 513 263 0 99 chr1 130972106 130972237 -66223195 - RSINE1 SINE B4 0 165 48 1 1584 507 69 0 0 chr1 130972273 130972345 -66223087 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1584 402 237 104 16 chr1 130972353 130972367 -66223065 - L1M4c LINE L1 -4143 2241 2229 1 1584 551 51 13 0 chr1 130972367 130972446 -66222986 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1 1584 402 237 104 16 chr1 130972446 130972624 -66222808 - L1M4c LINE L1 -4156 2228 2033 1 1584 549 296 146 14 chr1 130972627 130972771 -66222661 + RSINE1 SINE B4 3 165 0 1 1584 21 57 0 0 chr1 130972785 130972820 -66222612 + AT_rich Low_complexity Low_complexity 1 35 0 1 1584 565 110 40 0 chr1 130972847 130972947 -66222485 + Lx4A LINE L1 6953 7056 -2 1 1584 264 174 205 17 chr1 130973204 130973321 -66222111 - L1M4c LINE L1 -5068 1316 1178 1 1584 428 238 27 40 chr1 130973345 130973494 -66221938 - Lx5 LINE L1 -9 7041 6895 1 1584 446 262 40 64 chr1 130973494 130973681 -66221751 + MT2A LTR ERVL 235 464 -69 1 1584 258 32 0 0 chr1 130973713 130973744 -66221688 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1584 2975 224 47 16 chr1 130973744 130974997 -66220435 - Lx5 LINE L1 -561 6899 5695 1 1584 256 244 31 142 chr1 130974996 130975221 -66220211 - L1M4c LINE L1 -5230 1154 955 1 1584 334 259 123 49 chr1 130975222 130975371 -66220061 + B3A SINE B2 25 185 -10 1 1584 1141 301 226 14 chr1 130975385 130976115 -66219317 - L1M4c LINE L1 -5481 903 19 1 1584 448 328 171 46 chr1 130976511 130976751 -66218681 + B4 SINE B4 12 281 -11 1 1584 21 0 0 0 chr1 130976880 130976901 -66218531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1584 202 89 21 43 chr1 130977127 130977174 -66218258 + T-rich Low_complexity Low_complexity 1 46 0 1 1584 1638 233 13 60 chr1 130978193 130978591 -66216841 - MTEa LTR MaLR 0 379 1 1 1584 2034 211 25 7 chr1 130979276 130979933 -66215499 + Lx5 LINE L1 876 1609 -4268 1 1584 20763 175 45 35 chr1 130979930 130985137 -66210295 + Lx5 LINE L1 1834 7050 0 1 1584 284 273 140 50 chr1 130985797 130985981 -66209451 - MLT1J1 LTR MaLR -2 446 240 1 1584 878 304 7 3 chr1 130986038 130986251 -66209181 + ID_B1 SINE B4 2 210 -14 1 1584 667 131 37 0 chr1 130986869 130986976 -66208456 - URR1B DNA MER1_type 0 225 115 1 1584 2389 101 123 0 chr1 130986976 130987342 -66208090 + IAPLTR2a LTR ERVK 1 411 0 1 1584 1036 111 25 81 chr1 130987343 130987540 -66207892 + IAPEz-int LTR ERVK 9 194 -6287 1 1584 259 296 0 0 chr1 130987540 130987594 -66207838 + RLTR27 LTR ERVK 222 275 -34 1 1584 3436 68 22 16 chr1 130987594 130988160 -66207272 + IAPEz-int LTR ERVK 168 662 -5819 1 1584 2274 58 0 0 chr1 130988160 130988438 -66206994 + IAPEz-int LTR ERVK 1359 1636 -4845 1 1584 5936 49 15 19 chr1 130988437 130989184 -66206248 + IAPEz-int LTR ERVK 5736 6479 -2 1 1584 2334 85 24 62 chr1 130989186 130989526 -66205906 + IAPLTR2a LTR ERVK 1 327 0 1 1584 530 180 210 0 chr1 130989526 130989626 -66205806 - URR1B DNA MER1_type -105 120 1 1 1584 431 141 13 0 chr1 130989982 130990060 -66205372 + GA-rich Low_complexity Low_complexity 2 80 0 1 1584 246 264 81 9 chr1 130990060 130990171 -66205261 + Lx7 LINE L1 7578 7696 0 1 1584 366 210 52 29 chr1 130990415 130990606 -66204826 + (TCTA)n Simple_repeat Simple_repeat 1 195 0 1 1584 231 169 156 10 chr1 130990677 130990773 -66204659 - Lx9 LINE L1 0 7644 7535 1 1584 1350 274 64 13 chr1 130990796 130991266 -66204166 - L1M2 LINE L1 -860 5283 4790 1 1584 396 0 0 0 chr1 130991744 130991788 -66203644 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1584 597 258 157 16 chr1 130992054 130992239 -66203193 - B3 SINE B2 -5 211 1 1 1584 1616 35 0 10 chr1 130992422 130992622 -66202810 - L1Md_F3 LINE L1 0 6584 6387 1 1584 6822 208 34 25 chr1 130992824 130994292 -66201140 + Lx7 LINE L1 3751 5232 -648 1 1584 3711 25 0 0 chr1 130994292 130994688 -66200744 - MTA_Mm LTR MaLR 0 396 1 1 1584 6822 208 34 25 chr1 130994688 130994806 -66200626 + Lx7 LINE L1 5233 5352 -528 1 1584 5095 260 89 26 chr1 130994819 130996639 -66198793 + Lx7 LINE L1 5470 7414 -282 1 1584 231 103 0 0 chr1 130996654 130996693 -66198739 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1584 1295 65 0 5 chr1 130996693 130996896 -66198536 + (GA)n Simple_repeat Simple_repeat 1 202 0 1 1584 852 265 79 57 chr1 130997147 130997428 -66198004 - B4 SINE B4 -6 286 24 1 1584 577 221 70 14 chr1 130998584 130998726 -66196706 + B3A SINE B2 2 151 -47 1 1584 265 382 46 42 chr1 130998810 130998973 -66196459 - MIR SINE MIR -48 160 4 1 1584 972 282 86 8 chr1 130999061 130999329 -66196103 + B4 SINE B4 2 290 -2 1 1584 345 187 0 0 chr1 130999396 130999471 -66195961 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1584 182 294 42 42 chr1 131000544 131000615 -66194817 - L2 LINE L2 -567 2852 2782 1 1584 1007 298 67 26 chr1 131000784 131001170 -66194262 + MTD LTR MaLR 5 406 -13 2 1584 424 220 33 0 chr1 131002090 131002181 -66193251 - Lx9 LINE L1 -851 6793 6700 3 1584 22 56 0 0 chr1 131002274 131002310 -66193122 + AT_rich Low_complexity Low_complexity 1 36 0 4 1584 2833 59 0 0 chr1 131003062 131003416 -66192016 + L1Md_F2 LINE L1 6217 6570 -12 5 1584 386 366 45 49 chr1 131004017 131004241 -66191191 + B4A SINE B4 17 239 -53 6 1584 953 262 34 31 chr1 131005068 131005344 -66190088 + B4 SINE B4 1 276 -16 7 1584 183 42 0 0 chr1 131005344 131005368 -66190064 + (C)n Simple_repeat Simple_repeat 1 24 0 8 1584 953 262 34 31 chr1 131005368 131005382 -66190050 + B4 SINE B4 277 291 -1 7 1584 371 314 57 0 chr1 131005575 131005724 -66189708 - B3 SINE B2 -38 160 2 9 1584 4245 105 10 8 chr1 131005724 131006331 -66189101 - Lx3C LINE L1 -128 6848 6241 1 1584 5456 104 10 9 chr1 131006329 131007455 -66187977 + Lx3C LINE L1 5112 6234 -742 1 1584 219 321 0 0 chr1 131007455 131007511 -66187921 - B3 SINE B2 -160 56 1 9 1584 626 212 57 62 chr1 131008196 131008256 -66187176 + RMER30 DNA MER1_type 11 68 -134 1 1584 612 0 0 0 chr1 131008256 131008324 -66187108 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1584 626 212 57 62 chr1 131008324 131008439 -66186993 + RMER30 DNA MER1_type 69 185 -17 1 1584 378 0 0 0 chr1 131009364 131009406 -66186026 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1584 321 26 0 0 chr1 131009406 131009444 -66185988 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1584 517 291 0 22 chr1 131009852 131009989 -66185443 - B1_Mur1 SINE Alu -10 139 6 1 1584 603 286 0 47 chr1 131010829 131011020 -66184412 + B3A SINE B2 2 183 -15 1 1584 754 336 8 27 chr1 131011610 131011870 -66183562 - B4A SINE B4 -29 263 9 1 1584 29 0 0 0 chr1 131012850 131012879 -66182553 + AT_rich Low_complexity Low_complexity 1 29 0 1 1584 645 282 16 52 chr1 131012880 131013071 -66182361 - B3A SINE B2 -6 192 9 1 1584 5035 65 0 8 chr1 131013072 131013727 -66181705 - L1Md_F2 LINE L1 0 6582 5933 2 1584 24440 76 1 1 chr1 131013727 131017807 -66177625 - L1Md_F LINE L1 -1413 4470 392 2 1584 746 309 34 56 chr1 131018023 131018091 -66177341 - B4A SINE B4 -7 285 228 2 1584 655 234 109 0 chr1 131018091 131018283 -66177149 - B3 SINE B2 -3 213 1 2 1584 746 309 34 56 chr1 131018283 131018481 -66176951 - B4A SINE B4 -65 227 25 2 1584 1154 283 74 52 chr1 131019909 131020393 -66175039 + Lx8 LINE L1 6950 7444 -29 2 1584 546 327 6 0 chr1 131020393 131020549 -66174883 + B3A SINE B2 1 157 -41 2 1584 567 0 0 0 chr1 131020551 131020614 -66174818 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1584 216 0 0 0 chr1 131020614 131020638 -66174794 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1584 699 183 0 0 chr1 131021900 131022075 -66173357 + CT-rich Low_complexity Low_complexity 3 177 0 2 1584 210 358 0 12 chr1 131022141 131022223 -66173209 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1584 258 105 0 0 chr1 131022270 131022308 -66173124 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 1584 372 43 0 0 chr1 131022417 131022463 -66172969 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 1584 340 271 1 1 chr1 131022567 131022656 -66172776 - B4 SINE B4 -69 96 7 3 1584 636 265 83 12 chr1 131022705 131022873 -66172559 - B3A SINE B2 -16 182 3 3 1584 705 304 11 0 chr1 131023604 131023795 -66171637 - B3A SINE B2 -5 193 1 3 1584 2035 152 33 38 chr1 131024117 131024485 -66170947 - ORR1B2 LTR MaLR -1 366 1 3 1584 359 303 98 0 chr1 131025260 131025382 -66170050 + MER3 DNA MER1_type 6 139 -70 3 1584 223 216 0 38 chr1 131025372 131025425 -66170007 - PB1D9 SINE Alu -4 116 66 3 1584 7755 99 25 11 chr1 131025482 131027127 -66168305 + L1_Mus4 LINE L1 4984 6636 0 3 1584 279 0 0 0 chr1 131027284 131027315 -66168117 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1584 207 0 0 0 chr1 131027315 131027337 -66168095 + (CG)n Simple_repeat Simple_repeat 2 24 0 4 1584 213 341 33 21 chr1 131027352 131027494 -66167938 - MIR SINE MIR -88 174 32 4 1584 227 315 83 9 chr1 131027582 131027691 -66167741 - LTR16E2 LTR ERVL -5 533 417 4 1584 3188 59 0 5 chr1 131027733 131028142 -66167290 + L1Md_F2 LINE L1 6164 6570 -12 4 1584 230 360 62 56 chr1 131028193 131028337 -66167095 - LTR16E2 LTR ERVL -256 312 168 4 1584 236 312 12 24 chr1 131028504 131028586 -66166846 + B3A SINE B2 3 83 -115 4 1584 198 0 0 0 chr1 131028595 131028617 -66166815 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 4 1584 5992 6 0 0 chr1 131028793 131029470 -66165962 - L1_Mm LINE L1 -2159 3724 3048 4 1584 6381 17 0 1 chr1 131029470 131030185 -66165247 + L1Md_A LINE L1 5869 6582 0 4 1584 651 221 21 42 chr1 131030641 131030783 -66164649 - B3 SINE B2 -77 139 1 4 1584 685 251 171 4 chr1 131032119 131032359 -66163073 + B4 SINE B4 3 282 -10 4 1584 480 35 0 0 chr1 131033152 131033210 -66162222 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1584 234 0 0 0 chr1 131033211 131033237 -66162195 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1584 495 252 235 67 chr1 131033247 131033485 -66161947 - B4A SINE B4 -14 278 1 5 1584 270 0 0 0 chr1 131034513 131034543 -66160889 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 5 1584 781 311 37 41 chr1 131034576 131034847 -66160585 + B4A SINE B4 3 272 -20 5 1584 591 259 46 36 chr1 131034970 131035166 -66160266 - B3A SINE B2 0 198 1 5 1584 189 107 0 0 chr1 131035225 131035253 -66160179 + (CTG)n Simple_repeat Simple_repeat 3 30 0 5 1584 891 269 60 45 chr1 131035740 131036009 -66159423 - B4A SINE B4 -19 273 1 5 1584 589 299 26 2 chr1 131036045 131036248 -66159184 - B3A SINE B2 -1 215 7 5 1584 2473 93 23 0 chr1 131036275 131036620 -66158812 - L1_Mus3 LINE L1 0 6638 6286 5 1584 762 339 68 37 chr1 131036860 131037374 -66158058 - MT2A LTR ERVL -2 531 2 6 1584 365 0 22 0 chr1 131037573 131037618 -66157814 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1584 1656 194 79 43 chr1 131037618 131038012 -66157420 + MTD LTR MaLR 12 419 0 6 1584 180 324 66 26 chr1 131038209 131038361 -66157071 + L2 LINE L2 2558 2715 -704 6 1584 245 284 82 68 chr1 131038459 131038678 -66156754 + L1MC5 LINE L1 7696 7917 -44 6 1584 234 62 0 0 chr1 131038686 131038718 -66156714 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1584 417 242 42 0 chr1 131038811 131038906 -66156526 - B1_Mur4 SINE Alu -51 99 1 6 1584 386 69 0 17 chr1 131039085 131039144 -66156288 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1584 669 309 32 12 chr1 131039149 131039398 -66156034 - B4A SINE B4 -23 269 16 6 1584 270 0 0 0 chr1 131040143 131040173 -66155259 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1584 915 163 0 0 chr1 131040181 131040347 -66155085 + CT-rich Low_complexity Low_complexity 2 167 0 7 1584 234 0 0 0 chr1 131040347 131040373 -66155059 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1584 797 254 96 9 chr1 131041171 131041401 -66154031 + B4 SINE B4 1 250 -42 7 1584 754 207 28 0 chr1 131041401 131041546 -66153886 - B1_Mur4 SINE Alu -1 149 1 7 1584 430 256 43 36 chr1 131041847 131041985 -66153447 + MT2A LTR ERVL 1 139 -394 7 1584 3064 254 113 27 chr1 131041996 131042636 -66152796 - Lx6 LINE L1 -8 7452 6738 7 1584 288 77 0 0 chr1 131042636 131042675 -66152757 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 7 1584 3064 273 72 26 chr1 131042675 131043056 -66152376 - Lx6 LINE L1 -723 6737 6136 7 1584 758 67 9 0 chr1 131043633 131043738 -66151694 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 7 1584 186 133 0 0 chr1 131045251 131045281 -66150151 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 7 1584 826 295 36 50 chr1 131046073 131046437 -66148995 - ORR1E LTR MaLR 0 359 1 7 1584 227 256 25 25 chr1 131047624 131047704 -66147728 + L1MEg LINE L1 6 85 -6034 8 1584 462 264 139 0 chr1 131048082 131048211 -66147221 - Lx8 LINE L1 -303 7170 7024 8 1584 391 289 27 80 chr1 131048211 131048399 -66147033 + Lx8 LINE L1 7245 7422 -51 8 1584 327 309 31 0 chr1 131049408 131049505 -66145927 + L1MEg LINE L1 1078 1177 -5048 8 1584 459 331 42 37 chr1 131051859 131052050 -66143382 + B4 SINE B4 30 221 -71 8 1584 467 233 112 41 chr1 131052050 131052247 -66143185 + Lx8 LINE L1 7261 7471 -2 8 1584 357 109 0 0 chr1 131052303 131052358 -66143074 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1584 254 298 24 0 chr1 131055218 131055302 -66140130 + GA-rich Low_complexity Low_complexity 6 91 0 8 1584 1260 132 5 10 chr1 131055486 131055692 -66139740 + Lx5 LINE L1 5627 5831 -1219 8 1584 4509 176 70 47 chr1 131055724 131056614 -66138818 + Lx5 LINE L1 6141 7050 0 8 1584 183 156 0 0 chr1 131056614 131056646 -66138786 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 8 1584 24 32 0 0 chr1 131057856 131057887 -66137545 + AT_rich Low_complexity Low_complexity 1 31 0 8 1584 5557 38 2 6 chr1 131058441 131059075 -66136357 + L1Md_F2 LINE L1 5948 6578 -4 8 1584 378 0 0 0 chr1 131059095 131059137 -66136295 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1584 490 306 140 35 chr1 131059141 131059398 -66136034 - B4A SINE B4 -5 287 4 9 1584 970 290 111 22 chr1 131059628 131059998 -66135434 + MTD LTR MaLR 17 419 0 9 1584 554 326 16 11 chr1 131060193 131060379 -66135053 + L4 LINE RTE 1221 1407 -622 9 1584 368 282 221 0 chr1 131060430 131060561 -66134871 - HAL1-3A_ME LINE L1 -422 2436 2277 9 1584 203 234 42 21 chr1 131062154 131062250 -66133182 + (TA)n Simple_repeat Simple_repeat 2 99 0 9 1584 414 79 26 13 chr1 131062347 131062424 -66133008 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 9 1584 388 179 40 20 chr1 131063192 131063340 -66132092 + CT-rich Low_complexity Low_complexity 1 151 0 9 1584 946 299 56 22 chr1 131063410 131063680 -66131752 - B4 SINE B4 -4 288 10 9 1584 1022 129 7 7 chr1 131063829 131063966 -66131466 + B1_Mus1 SINE Alu 1 138 -10 9 1584 343 0 43 0 chr1 131063966 131064013 -66131419 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1584 226 292 0 0 chr1 131064835 131064900 -66130532 - L1MC4 LINE L1 -776 7266 7202 1 1584 219 340 13 108 chr1 131064973 131065131 -66130301 - L2b LINE L2 -115 3260 3118 1 1584 254 290 27 107 chr1 131065242 131065354 -66130078 - Charlie9 DNA MER1_type 0 2757 2655 1 1584 660 179 20 0 chr1 131065848 131065999 -66129433 + CT-rich Low_complexity Low_complexity 1 154 0 1 1584 1223 76 0 0 chr1 131065999 131066144 -66129288 - B1_Mus2 SINE Alu -2 145 1 1 1584 952 286 141 23 chr1 131066173 131066563 -66128869 - Lx8 LINE L1 -2 7471 7036 1 1584 231 299 29 49 chr1 131067084 131067186 -66128246 + L2a LINE L2 3285 3384 -42 1 1584 761 301 51 48 chr1 131067780 131068206 -66127226 + L1MDb LINE L1 1086 1545 -5088 1 1584 283 271 44 44 chr1 131068585 131068720 -66126712 + L1MDb LINE L1 2242 2376 -4257 1 1584 1070 91 0 14 chr1 131068722 131068867 -66126565 + L1_Mus1 LINE L1 6424 6566 -1 1 1584 200 178 0 0 chr1 131068888 131068918 -66126514 + (TTTAA)n Simple_repeat Simple_repeat 4 33 0 1 1584 1234 43 0 0 chr1 131068918 131069056 -66126376 - B1_Mm SINE Alu -5 142 5 1 1584 200 178 0 0 chr1 131069056 131069070 -66126362 + (TTTAA)n Simple_repeat Simple_repeat 5 18 0 1 1584 3812 209 51 73 chr1 131069076 131070370 -66125062 - RMER1B Other Other 0 1066 2 1 1584 1696 232 66 38 chr1 131070417 131070688 -66124744 - RMER1C Other Other -9 1333 1046 1 1584 2916 108 10 2 chr1 131070688 131071106 -66124326 - Lx2 LINE L1 0 6997 6577 1 1584 1696 232 66 38 chr1 131071106 131071255 -66124177 - RMER1C Other Other -297 1045 892 1 1584 389 129 0 0 chr1 131071255 131071325 -66124107 - L1_Mus3 LINE L1 0 6638 6569 1 1584 1696 232 66 38 chr1 131071325 131071373 -66124059 - RMER1C Other Other -451 891 851 1 1584 198 0 0 0 chr1 131071404 131071426 -66124006 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1584 360 285 92 14 chr1 131071447 131071664 -66123768 + L1MDb LINE L1 4113 4346 -2191 1 1584 660 135 0 0 chr1 131071807 131071918 -66123514 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 24 367 290 155 63 chr1 131071934 131072391 -66123041 + L1MD LINE L1 3950 4448 -1698 1 1585 625 267 242 13 chr1 131072414 131072728 -66122704 + MTD LTR MaLR 20 405 -14 1 1585 678 302 54 68 chr1 131072741 131073150 -66122282 + L1MD LINE L1 4452 4854 -1292 1 1585 204 121 28 83 chr1 131073386 131073458 -66121974 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 1 1585 540 0 0 0 chr1 131073459 131073519 -66121913 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1585 569 346 0 25 chr1 131073575 131073738 -66121694 - B4A SINE B4 -133 159 1 1 1585 378 0 0 0 chr1 131073742 131073784 -66121648 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1585 238 321 9 18 chr1 131073823 131073937 -66121495 + L1MD LINE L1 4928 5040 -1106 1 1585 822 309 38 41 chr1 131073950 131074291 -66121141 + L1MA4A LINE L1 5572 5911 -392 1 1585 375 23 0 0 chr1 131074310 131074354 -66121078 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1585 408 40 0 0 chr1 131074359 131074409 -66121023 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1585 850 270 127 59 chr1 131074697 131075341 -66120091 + L1MD LINE L1 5085 5767 -592 1 1585 1014 244 98 4 chr1 131075881 131076136 -66119296 + MTEa LTR MaLR 101 379 0 1 1585 637 264 35 122 chr1 131076444 131076486 -66118946 - B3 SINE B2 -6 210 171 1 1585 450 0 0 0 chr1 131076486 131076536 -66118896 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1585 637 264 35 122 chr1 131076536 131076722 -66118710 - B3 SINE B2 -46 170 2 1 1585 711 250 48 76 chr1 131076724 131077014 -66118418 - Lx8 LINE L1 -2 7471 7190 1 1585 1047 306 39 7 chr1 131077708 131077988 -66117444 + B4A SINE B4 1 289 -3 1 1585 2762 178 63 21 chr1 131078026 131078633 -66116799 + Lx9 LINE L1 6890 7521 -123 1 1585 234 366 102 16 chr1 131078994 131079297 -66116135 + L2 LINE L2 1611 1939 -1480 1 1585 5524 104 26 5 chr1 131079614 131080386 -66115046 - L1_Mus4 LINE L1 0 6636 5849 1 1585 2042 264 24 20 chr1 131080752 131081063 -66114369 + RMER1B Other Other 1 320 -746 1 1585 3686 28 2 0 chr1 131081063 131081458 -66113974 - MTA_Mm LTR MaLR 0 396 1 1 1585 9791 34 5 1 chr1 131081458 131082552 -66112880 - MTA_Mm-int LTR MaLR 0 1098 1 1 1585 3720 23 2 0 chr1 131082552 131082947 -66112485 - MTA_Mm LTR MaLR 0 396 1 1 1585 2868 197 286 17 chr1 131082947 131083761 -66111671 + RMER1A Other Other 47 1029 -1 1 1585 246 330 50 45 chr1 131083844 131084044 -66111388 + L2 LINE L2 2632 2832 -587 1 1585 228 263 141 0 chr1 131084032 131084131 -66111301 - L2c LINE L2 0 3387 3275 1 1585 180 348 68 25 chr1 131084260 131084378 -66111054 - MER5A DNA MER1_type -24 165 43 1 1585 319 299 0 10 chr1 131084379 131084477 -66110955 + (TATG)n Simple_repeat Simple_repeat 4 100 0 1 1585 922 320 25 11 chr1 131084481 131084765 -66110667 - B4 SINE B4 -1 291 4 1 1585 3288 20 0 0 chr1 131084807 131085153 -66110279 - ORR1A0 LTR MaLR 0 346 1 1 1585 14972 53 12 1 chr1 131085153 131086924 -66108508 - ORR1A0-int LTR MaLR 0 1792 1 1 1585 3295 20 0 0 chr1 131086924 131087270 -66108162 - ORR1A0 LTR MaLR 0 346 1 1 1585 225 388 115 39 chr1 131087409 131087766 -66107666 - MLT1J2 LTR MaLR 0 448 65 1 1585 444 396 108 26 chr1 131087847 131088309 -66107123 - MLT1J2-int LTR MaLR -13 1374 875 1 1585 208 135 0 0 chr1 131088724 131088761 -66106671 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1585 401 53 0 18 chr1 131089182 131089239 -66106193 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1585 507 270 111 0 chr1 131089252 131089378 -66106054 - B3 SINE B2 -75 141 2 1 1585 616 192 68 31 chr1 131089384 131089545 -66105887 - L1MA4 LINE L1 -361 5939 5773 1 1585 1484 231 28 80 chr1 131090185 131090575 -66104857 + MTEa LTR MaLR 4 373 -6 1 1585 738 243 41 0 chr1 131091601 131091770 -66103662 - B3 SINE B2 0 216 41 1 1585 1167 89 7 0 chr1 131091824 131091970 -66103462 - B1_Mus2 SINE Alu 0 147 1 1 1585 873 250 17 6 chr1 131092007 131092180 -66103252 - B3A SINE B2 -19 179 5 1 1585 474 65 0 0 chr1 131092199 131092261 -66103171 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1585 788 294 43 25 chr1 131092274 131092553 -66102879 - B4 SINE B4 -8 284 1 1 1585 732 238 40 45 chr1 131092924 131093100 -66102332 - B3A SINE B2 -8 190 16 1 1585 388 307 46 20 chr1 131093641 131093794 -66101638 - MER20 DNA MER1_type -31 188 32 1 1585 506 267 137 76 chr1 131093863 131094174 -66101258 + ORR1E LTR MaLR 3 362 -12 1 1585 303 206 50 20 chr1 131094364 131094453 -66100979 + Lx9 LINE L1 7543 7631 -13 1 1585 513 71 0 0 chr1 131094453 131094523 -66100909 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1585 444 348 94 43 chr1 131094536 131094770 -66100662 + B4A SINE B4 1 246 -46 1 1585 324 0 0 0 chr1 131094925 131094961 -66100471 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1585 444 19 0 0 chr1 131095743 131095796 -66099636 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1585 525 331 37 54 chr1 131095808 131096105 -66099327 - B4 SINE B4 0 292 1 1 1585 828 266 181 3 chr1 131096568 131096855 -66098577 - MTEb LTR MaLR -3 376 39 1 1585 547 293 156 0 chr1 131096840 131097007 -66098425 - B3 SINE B2 -13 203 11 1 1585 269 289 45 19 chr1 131097020 131097124 -66098308 - MTEa LTR MaLR -265 114 9 1 1585 681 245 116 118 chr1 131097659 131098039 -66097393 - MTE2a LTR MaLR 0 379 1 1 1585 237 345 0 58 chr1 131098875 131098950 -66096482 - MIRb SINE MIR -121 147 75 1 1585 764 270 5 30 chr1 131098950 131099152 -66096280 + B3A SINE B2 2 198 0 1 1585 237 345 0 58 chr1 131099152 131099196 -66096236 - MIRb SINE MIR -194 74 35 1 1585 34 24 0 0 chr1 131099707 131099748 -66095684 + AT_rich Low_complexity Low_complexity 1 41 0 1 1585 729 284 110 8 chr1 131099783 131099866 -66095566 - Lx8 LINE L1 -163 7310 7227 1 1585 321 26 0 0 chr1 131099866 131099904 -66095528 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1585 729 284 110 8 chr1 131099904 131100065 -66095367 - Lx8 LINE L1 -247 7226 7043 1 1585 978 266 15 5 chr1 131100072 131100272 -66095160 - ID_B1 SINE B4 -20 204 3 1 1585 718 307 9 6 chr1 131100286 131100481 -66094951 - B3A SINE B2 -11 205 6 1 1585 226 265 121 0 chr1 131100771 131100854 -66094578 - ID_B1 SINE B4 -131 93 1 1 1585 1271 223 159 26 chr1 131101692 131102051 -66093381 + MTB_Mm LTR MaLR 1 395 -12 1 1585 627 341 21 45 chr1 131102247 131102536 -66092896 - B4A SINE B4 -6 286 5 1 1585 254 429 0 0 chr1 131102588 131102679 -66092753 + LTR88a LTR Gypsy 336 426 -390 1 1585 211 338 104 0 chr1 131102747 131102777 -66092655 - B4 SINE B4 -174 118 89 1 1585 275 0 29 0 chr1 131102777 131102812 -66092620 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1 1585 211 338 104 0 chr1 131102812 131102858 -66092574 - B4 SINE B4 -204 88 35 1 1585 560 331 19 0 chr1 131103004 131103164 -66092268 - ID_B1 SINE B4 -32 192 30 1 1585 310 372 32 0 chr1 131103211 131103367 -66092065 - LTR16C LTR ERVL 0 489 329 1 1585 1448 164 290 7 chr1 131103580 131103887 -66091545 + ORR1B1 LTR MaLR 1 394 0 1 1585 468 0 0 0 chr1 131105598 131105650 -66089782 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1585 294 344 131 26 chr1 131105650 131105841 -66089591 - B4A SINE B4 -80 212 2 1 1585 2425 80 9 13 chr1 131105976 131106292 -66089140 - L1Md_F2 LINE L1 -11 6571 6257 1 1585 3311 56 5 8 chr1 131106684 131107081 -66088351 + MTA_Mm LTR MaLR 1 396 0 1 1585 774 331 18 40 chr1 131107225 131107499 -66087933 - B4A SINE B4 -21 271 4 1 1585 323 350 31 12 chr1 131107646 131107808 -66087624 + L2 LINE L2 2290 2454 -965 1 1585 1105 31 0 0 chr1 131107821 131107949 -66087483 - L1_Mus2 LINE L1 -803 5763 5636 1 1585 6468 75 4 1 chr1 131107949 131108750 -66086682 + L1_Mus2 LINE L1 5763 6565 -1 1 1585 579 304 10 5 chr1 131108778 131108986 -66086446 + Lx9 LINE L1 7285 7493 -151 1 1585 441 0 0 0 chr1 131109203 131109252 -66086180 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1585 369 0 0 0 chr1 131109252 131109292 -66086140 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1585 917 280 10 0 chr1 131109383 131109583 -66085849 - ID_B1 SINE B4 -3 221 20 1 1585 243 0 0 0 chr1 131110214 131110241 -66085191 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1585 394 311 307 17 chr1 131110241 131110612 -66084820 - MLT2B1 LTR ERVL -38 518 32 1 1585 416 257 50 0 chr1 131110736 131110837 -66084595 - PB1D10 SINE Alu -9 108 3 1 1585 738 264 18 0 chr1 131110837 131110918 -66084514 - ID SINE ID -139 85 2 1 1585 506 348 95 14 chr1 131111345 131111639 -66083793 + Charlie7 DNA MER1_type 356 673 -1939 1 1585 517 342 85 65 chr1 131111811 131112152 -66083280 - MLT1A0 LTR MaLR -17 348 1 1 1585 266 286 29 0 chr1 131112154 131112172 -66083260 - MLT1A0-int LTR MaLR -26 1709 1691 1 1585 429 54 0 0 chr1 131112172 131112228 -66083204 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1585 266 286 29 0 chr1 131112228 131112314 -66083118 - MLT1A0-int LTR MaLR -45 1690 1603 1 1585 219 114 0 0 chr1 131112343 131112378 -66083054 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1585 625 193 58 39 chr1 131112414 131112619 -66082813 + Lx9 LINE L1 7429 7637 -7 2 1585 974 254 95 14 chr1 131112987 131113042 -66082390 - MTEa LTR MaLR -71 308 253 2 1585 345 109 0 0 chr1 131113042 131113106 -66082326 + (CTG)n Simple_repeat Simple_repeat 1 64 0 2 1585 974 254 95 14 chr1 131113106 131113334 -66082098 - MTEa LTR MaLR -127 252 3 2 1585 1337 337 91 75 chr1 131113384 131114235 -66081197 - MLT1A0-int LTR MaLR -617 1118 255 1 1585 801 73 0 0 chr1 131114276 131114385 -66081047 + (CA)n Simple_repeat Simple_repeat 2 110 0 2 1585 234 0 0 0 chr1 131114385 131114410 -66081022 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1585 638 259 37 31 chr1 131114624 131114787 -66080645 - RSINE1 SINE B4 0 165 2 2 1585 350 273 206 7 chr1 131114804 131114959 -66080473 - MLT1A1 LTR MaLR -2 406 221 2 1585 935 220 112 100 chr1 131115147 131115495 -66079937 + MTD LTR MaLR 5 357 -62 2 1585 1190 68 0 0 chr1 131115495 131115641 -66079791 - B1_Mm SINE Alu -1 146 1 2 1585 935 220 112 100 chr1 131115641 131115702 -66079730 + MTD LTR MaLR 358 419 0 2 1585 529 316 7 0 chr1 131115846 131115985 -66079447 + B4 SINE B4 6 145 -147 2 1585 1427 220 97 14 chr1 131116124 131116474 -66078958 + MTEa LTR MaLR 1 379 0 2 1585 1069 296 74 52 chr1 131117550 131117956 -66077476 + MTD LTR MaLR 5 419 0 2 1585 597 305 6 17 chr1 131118614 131118794 -66076638 + B3A SINE B2 5 182 -16 2 1585 22 56 0 0 chr1 131118804 131118840 -66076592 + AT_rich Low_complexity Low_complexity 1 36 0 2 1585 405 0 0 0 chr1 131119361 131119406 -66076026 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1585 1171 281 97 18 chr1 131119440 131119893 -66075539 + MLT1D LTR MaLR 17 505 0 2 1585 4119 55 2 4 chr1 131120162 131120676 -66074756 - L1Md_F2 LINE L1 -1 6581 6069 2 1585 261 83 0 0 chr1 131121267 131121303 -66074129 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1585 608 303 40 0 chr1 131121317 131121492 -66073940 - B3A SINE B2 -16 182 1 2 1585 301 275 111 12 chr1 131122163 131122244 -66073188 + B4 SINE B4 2 90 -202 2 1585 541 333 29 47 chr1 131122296 131122466 -66072966 + B4 SINE B4 98 264 -28 2 1585 312 94 0 0 chr1 131122469 131122522 -66072910 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1585 585 0 0 0 chr1 131122524 131122589 -66072843 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1585 330 87 0 0 chr1 131123901 131123947 -66071485 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1585 243 0 0 0 chr1 131124324 131124351 -66071081 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1585 420 340 27 0 chr1 131124352 131124502 -66070930 - B3A SINE B2 -44 154 1 2 1585 632 314 16 0 chr1 131125017 131125208 -66070224 + B3A SINE B2 1 194 -4 2 1585 6830 90 5 21 chr1 131125955 131127401 -66068031 - L1_Mus2 LINE L1 0 6566 5145 2 1585 680 207 170 5 chr1 131127407 131127601 -66067831 + URR1A DNA MER1_type 1 226 0 2 1585 215 322 48 43 chr1 131128007 131128049 -66067383 - B2_Mm2 SINE B2 -2 193 5 2 1585 649 281 68 0 chr1 131128049 131128195 -66067237 - RSINE1 SINE B4 -4 161 6 2 1585 4055 233 65 22 chr1 131128235 131129358 -66066074 + Lx9 LINE L1 6474 7644 0 2 1585 9466 85 11 34 chr1 131129572 131129675 -66065757 - L1_Mur1 LINE L1 -518 5368 5270 2 1585 4391 22 0 0 chr1 131129675 131130168 -66065264 - MT2_Mm LTR ERVL 0 493 1 2 1585 9466 85 11 34 chr1 131130168 131130716 -66064716 - L1_Mur1 LINE L1 -617 5269 4735 2 1585 221 0 35 0 chr1 131130716 131130745 -66064687 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1585 9466 85 11 34 chr1 131130745 131131556 -66063876 - L1_Mur1 LINE L1 -1152 4734 3932 2 1585 261 0 0 0 chr1 131131556 131131585 -66063847 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1585 1077 80 0 0 chr1 131131585 131131722 -66063710 - B1_Mus2 SINE Alu -10 137 1 2 1585 9466 85 11 34 chr1 131131722 131131797 -66063635 - L1_Mur1 LINE L1 -1955 3931 3865 2 1585 348 243 0 41 chr1 131131799 131131872 -66063560 - ID_B1 SINE B4 -59 165 96 2 1585 515 261 176 29 chr1 131132336 131132370 -66063062 - B3A SINE B2 -3 195 164 2 1585 333 0 0 0 chr1 131132370 131132407 -66063025 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1585 515 261 176 29 chr1 131132407 131132542 -66062890 - B3A SINE B2 -35 163 1 2 1585 240 59 0 0 chr1 131133125 131133159 -66062273 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1585 620 326 54 22 chr1 131133485 131133802 -66061630 - MER89-int LTR ERV1 -411 6390 6064 2 1585 180 0 0 0 chr1 131133836 131133856 -66061576 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1585 840 333 52 26 chr1 131133861 131134129 -66061303 - B4 SINE B4 -16 276 2 2 1585 548 298 40 44 chr1 131134282 131134531 -66060901 - MER89-int LTR ERV1 -944 5857 5610 2 1585 935 302 116 16 chr1 131134571 131135055 -66060377 - MER89-int LTR ERV1 -1278 5523 4992 2 1585 1343 275 45 49 chr1 131137067 131137557 -66057875 - RMER19C LTR ERVK 0 611 62 2 1585 408 40 0 0 chr1 131137767 131137817 -66057615 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1585 668 268 35 59 chr1 131138678 131138880 -66056552 + B3A SINE B2 2 198 0 2 1585 1072 236 25 141 chr1 131139055 131139267 -66056165 + MTE2b LTR MaLR 3 163 -216 2 1585 4752 112 9 1 chr1 131139267 131139963 -66055469 + L1_Mus3 LINE L1 5937 6637 -1 2 1585 1072 246 38 163 chr1 131139963 131140184 -66055248 + MTE2b LTR MaLR 164 377 -2 2 1585 378 0 0 0 chr1 131140321 131140363 -66055069 + (CTAA)n Simple_repeat Simple_repeat 2 43 0 2 1585 528 260 30 50 chr1 131140947 131141149 -66054283 + B3A SINE B2 1 198 0 2 1585 21 0 0 0 chr1 131141652 131141673 -66053759 + AT_rich Low_complexity Low_complexity 1 21 0 2 1585 2026 176 46 8 chr1 131141981 131142354 -66053078 + MTC LTR MaLR 35 421 0 2 1585 24 0 0 0 chr1 131142357 131142381 -66053051 + AT_rich Low_complexity Low_complexity 1 24 0 2 1585 342 0 0 0 chr1 131142689 131142727 -66052705 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1585 405 0 0 0 chr1 131142727 131142771 -66052661 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1585 5989 61 14 1 chr1 131142872 131143642 -66051790 - L1_Mus2 LINE L1 0 6566 5787 2 1585 1368 67 0 0 chr1 131143742 131143922 -66051510 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 1585 549 309 75 33 chr1 131143966 131144327 -66051105 - Lx9 LINE L1 -203 7441 7066 2 1585 919 137 0 0 chr1 131144347 131144486 -66050946 - L1_Mur2 LINE L1 -277 5600 5462 2 1585 793 291 42 14 chr1 131144490 131144706 -66050726 - B4 SINE B4 -67 225 4 2 1585 663 247 132 0 chr1 131145721 131145868 -66049564 + B3A SINE B2 1 169 -29 2 1585 683 34 22 0 chr1 131145868 131145957 -66049475 + (CATA)n Simple_repeat Simple_repeat 4 94 0 2 1585 663 247 132 0 chr1 131145957 131145975 -66049457 + B3A SINE B2 170 187 -11 2 1585 228 222 0 0 chr1 131146234 131146296 -66049136 + (TTG)n Simple_repeat Simple_repeat 1 62 0 2 1585 347 331 41 8 chr1 131146315 131146437 -66048995 - RSINE1 SINE B4 -35 130 5 2 1585 279 0 0 0 chr1 131146898 131146929 -66048503 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 2 1585 491 248 116 69 chr1 131149049 131149222 -66046210 + B3A SINE B2 2 182 -16 2 1585 311 78 20 0 chr1 131149452 131149503 -66045929 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1585 26 0 0 0 chr1 131149950 131149976 -66045456 + AT_rich Low_complexity Low_complexity 1 26 0 2 1585 227 262 98 0 chr1 131150139 131150200 -66045232 - B3A SINE B2 -128 70 4 2 1585 489 290 44 25 chr1 131151127 131151286 -66044146 - ID_B1 SINE B4 -6 218 57 2 1585 207 100 0 0 chr1 131152186 131152216 -66043216 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1585 415 311 132 18 chr1 131152226 131152393 -66043039 - B3 SINE B2 -30 186 1 2 1585 242 273 0 35 chr1 131152768 131152825 -66042607 - MER5A1 DNA MER1_type -27 139 85 2 1585 256 345 43 70 chr1 131152934 131153121 -66042311 - MER20 DNA MER1_type -37 182 1 2 1585 326 236 80 111 chr1 131153158 131153357 -66042075 + MIRb SINE MIR 54 247 -21 2 1585 428 62 16 0 chr1 131154239 131154303 -66041129 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1585 1124 304 7 28 chr1 131154992 131155280 -66040152 - B4 SINE B4 -1 291 10 2 1585 647 35 12 0 chr1 131155374 131155460 -66039972 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 1585 378 0 0 0 chr1 131155461 131155503 -66039929 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1585 430 302 13 4 chr1 131155507 131155640 -66039792 - B3A SINE B2 -56 139 1 2 1585 299 319 53 40 chr1 131156028 131156178 -66039254 - LFSINE_Vert SINE SINE -99 360 209 2 1585 582 86 0 0 chr1 131156465 131156546 -66038886 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1585 846 275 43 50 chr1 131156589 131156868 -66038564 - B4 SINE B4 -14 278 2 2 1585 285 350 82 55 chr1 131156913 131157151 -66038281 - MIRb SINE MIR 0 268 23 2 1585 1270 167 42 5 chr1 131157151 131157368 -66038064 - URR1B DNA MER1_type 0 225 1 2 1585 284 350 82 55 chr1 131157368 131157386 -66038046 - MIRc SINE MIR -246 22 5 2 1585 486 0 0 0 chr1 131157934 131157988 -66037444 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 2 1585 366 23 0 0 chr1 131158484 131158527 -66036905 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1585 398 323 0 16 chr1 131158901 131159027 -66036405 + MIR3 SINE MIR 85 208 0 2 1585 609 14 0 0 chr1 131159433 131159503 -66035929 + (GAA)n Simple_repeat Simple_repeat 2 71 0 2 1585 1383 290 56 3 chr1 131159623 131159983 -66035449 - MTE2b LTR MaLR 0 379 1 2 1585 321 269 45 55 chr1 131160818 131160928 -66034504 - L2a LINE L2 -20 3406 3298 2 1585 1395 268 96 35 chr1 131161188 131161668 -66033764 - MT2A LTR ERVL -7 526 18 2 1585 404 368 69 23 chr1 131161927 131162233 -66033199 + MLT1I LTR MaLR 86 405 -6 2 1585 204 324 73 45 chr1 131163015 131163125 -66032307 - L2b LINE L2 -18 3357 3245 2 1585 180 111 0 0 chr1 131163561 131163588 -66031844 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1585 584 288 74 18 chr1 131163673 131163836 -66031596 - B3A SINE B2 -19 179 8 2 1585 262 346 80 27 chr1 131163844 131164031 -66031401 - L2a LINE L2 -111 3315 3119 2 1585 487 66 26 0 chr1 131164260 131164336 -66031096 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1585 450 0 0 0 chr1 131165127 131165177 -66030255 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1585 188 311 73 36 chr1 131165308 131165418 -66030014 + L2 LINE L2 2745 2858 -561 3 1585 1326 78 0 0 chr1 131165543 131165723 -66029709 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1585 411 301 128 6 chr1 131165812 131165976 -66029456 + MIR SINE MIR 2 185 -77 3 1585 252 0 0 0 chr1 131167339 131167367 -66028065 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1585 253 304 51 5 chr1 131167741 131167851 -66027581 + B4A SINE B4 189 288 -4 3 1585 522 0 0 0 chr1 131167865 131167923 -66027509 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1585 213 169 0 0 chr1 131168444 131168503 -66026929 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1585 25 31 0 0 chr1 131169906 131169938 -66025494 + GC_rich Low_complexity Low_complexity 1 32 0 3 1585 231 88 0 0 chr1 131170000 131170034 -66025398 + (TCC)n Simple_repeat Simple_repeat 3 36 0 3 1585 450 0 0 0 chr1 131171026 131171076 -66024356 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1585 315 0 0 0 chr1 131171076 131171110 -66024322 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1585 414 0 0 0 chr1 131171153 131171199 -66024233 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1585 315 0 0 0 chr1 131171539 131171574 -66023858 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1585 802 348 75 31 chr1 131173630 131174152 -66021280 - Lx8 LINE L1 0 7473 6929 3 1585 257 296 37 0 chr1 131175214 131175295 -66020137 - MamRep38 DNA hAT -2 293 210 3 1585 441 0 0 0 chr1 131176082 131176131 -66019301 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1585 481 380 26 13 chr1 131176155 131176307 -66019125 - RSINE1 SINE B4 -10 155 2 3 1585 323 358 26 19 chr1 131177172 131177326 -66018106 - RMER15 LTR ERVL -155 420 266 3 1585 727 280 0 37 chr1 131178005 131178194 -66017238 - B3A SINE B2 -16 182 1 3 1585 563 276 30 79 chr1 131178228 131178379 -66017053 + RSINE1 SINE B4 9 152 -13 3 1585 387 0 0 0 chr1 131178379 131178422 -66017010 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1585 563 276 30 79 chr1 131178422 131178435 -66016997 + RSINE1 SINE B4 153 165 0 3 1585 270 0 0 0 chr1 131178445 131178475 -66016957 + (CCA)n Simple_repeat Simple_repeat 3 32 0 3 1585 286 300 62 119 chr1 131178475 131178486 -66016946 + B3A SINE B2 173 182 -16 3 1585 26 50 0 0 chr1 131178487 131178527 -66016905 + AT_rich Low_complexity Low_complexity 1 40 0 3 1585 340 377 21 21 chr1 131178712 131178899 -66016533 + L3 LINE CR1 4244 4430 -59 3 1585 247 294 139 56 chr1 131179051 131179159 -66016273 + PB1 SINE Alu 1 117 -10 3 1585 243 0 0 0 chr1 131179163 131179190 -66016242 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3 1585 602 267 30 0 chr1 131179190 131179321 -66016111 - B1_Mur1 SINE Alu -12 137 3 3 1585 240 293 104 20 chr1 131179463 131179665 -66015767 - Charlie5 DNA MER1_type -24 2600 2382 3 1585 655 296 61 77 chr1 131179866 131180163 -66015269 + B4A SINE B4 1 292 0 3 1585 719 270 47 0 chr1 131181414 131181562 -66013870 + B3A SINE B2 1 155 -43 3 1585 279 0 0 0 chr1 131181796 131181827 -66013605 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1585 1102 217 84 84 chr1 131183090 131183268 -66012164 - ORR1E LTR MaLR -15 344 180 3 1585 1161 0 0 0 chr1 131183268 131183397 -66012035 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 3 1585 1102 217 84 84 chr1 131183397 131183561 -66011871 - ORR1E LTR MaLR -180 179 3 3 1585 189 0 0 0 chr1 131183691 131183712 -66011720 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1585 777 340 27 15 chr1 131183908 131184171 -66011261 + B4A SINE B4 5 270 -22 3 1585 390 42 0 0 chr1 131184171 131184219 -66011213 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1585 468 0 0 0 chr1 131184219 131184270 -66011162 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1585 495 48 0 0 chr1 131184445 131184507 -66010925 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 3 1585 267 157 56 11 chr1 131185450 131185540 -66009892 + CT-rich Low_complexity Low_complexity 2 95 0 3 1585 885 138 0 0 chr1 131185564 131185709 -66009723 + (TCCC)n Simple_repeat Simple_repeat 4 148 0 3 1585 388 247 32 0 chr1 131185728 131185821 -66009611 - PB1D10 SINE Alu -21 96 1 3 1585 23 0 0 0 chr1 131186440 131186463 -66008969 + AT_rich Low_complexity Low_complexity 1 23 0 3 1585 345 349 7 58 chr1 131186525 131186662 -66008770 - RSINE1 SINE B4 -25 140 11 3 1585 230 310 49 20 chr1 131186912 131187014 -66008418 - Tigger14a DNA MER2_type -147 177 73 3 1585 267 54 0 0 chr1 131187340 131187377 -66008055 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 3 1585 278 292 22 11 chr1 131187610 131187700 -66007732 - MLT1A1 LTR MaLR -316 92 2 3 1585 835 182 22 0 chr1 131187826 131187963 -66007469 + B1_Mur3 SINE Alu 2 141 -8 3 1585 417 39 0 0 chr1 131187967 131188018 -66007414 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 1585 287 159 0 0 chr1 131188035 131188079 -66007353 + ID SINE ID 11 54 -170 3 1585 260 365 63 8 chr1 131188083 131188210 -66007222 + B1_Mus1 SINE Alu 14 147 -1 3 1585 295 296 0 0 chr1 131188310 131188381 -66007051 + MER2 DNA MER2_type 86 156 -189 3 1585 1036 290 93 24 chr1 131188407 131188782 -66006650 + MTD LTR MaLR 5 405 -14 3 1585 434 364 39 10 chr1 131188757 131188965 -66006467 + MER2B DNA MER2_type 123 336 0 3 1585 483 278 75 0 chr1 131189451 131189584 -66005848 + ID_B1 SINE B4 74 216 -8 3 1585 318 284 113 52 chr1 131189583 131189795 -66005637 - Tigger9b DNA MER2_type -151 473 249 3 1585 584 101 0 0 chr1 131190153 131190232 -66005200 - ORR1A2 LTR MaLR 0 326 248 3 1585 11421 139 63 10 chr1 131190254 131192117 -66003315 - ORR1A2-int LTR MaLR 0 1963 1 3 1585 2190 103 3 16 chr1 131192117 131192432 -66003000 - ORR1A2 LTR MaLR 0 327 17 3 1585 387 0 0 0 chr1 131192432 131192475 -66002957 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 1585 1597 169 109 8 chr1 131192475 131192492 -66002940 - ORR1A2 LTR MaLR -346 48 26 3 1585 3073 81 25 8 chr1 131192492 131192890 -66002542 - L1Md_F2 LINE L1 -3 6579 6175 3 1585 1597 169 109 8 chr1 131192890 131192914 -66002518 - ORR1A2 LTR MaLR -369 25 2 3 1585 261 226 0 0 chr1 131193233 131193295 -66002137 + GA-rich Low_complexity Low_complexity 2 63 0 3 1585 1252 249 125 13 chr1 131194057 131194432 -66001000 + MTD LTR MaLR 1 417 -2 3 1585 667 315 72 29 chr1 131194996 131195205 -66000227 + B4A SINE B4 25 242 -50 3 1585 233 151 19 0 chr1 131195215 131195268 -66000164 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1585 22 35 0 0 chr1 131196414 131196443 -65998989 + AT_rich Low_complexity Low_complexity 1 29 0 3 1585 423 38 0 0 chr1 131196451 131196504 -65998928 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1585 571 258 16 0 chr1 131196544 131196668 -65998764 - B3 SINE B2 -90 126 1 3 1585 195 271 0 0 chr1 131196668 131196738 -65998694 + CT-rich Low_complexity Low_complexity 4 73 0 3 1585 287 333 23 23 chr1 131197143 131197275 -65998157 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 1585 29 0 0 0 chr1 131197404 131197433 -65997999 + AT_rich Low_complexity Low_complexity 1 29 0 3 1585 631 335 30 15 chr1 131197437 131197637 -65997795 - B4 SINE B4 -87 205 3 3 1585 1224 63 0 7 chr1 131198012 131198156 -65997276 - B1_Mus2 SINE Alu -3 144 2 3 1585 3765 251 67 15 chr1 131198163 131199115 -65996317 - Lx6 LINE L1 -8 7452 6451 3 1585 263 295 75 30 chr1 131199662 131199795 -65995637 + MLT1I LTR MaLR 96 234 -177 3 1585 522 280 0 39 chr1 131199787 131199943 -65995489 + RMER30 DNA MER1_type 7 156 -46 3 1585 525 320 30 40 chr1 131200234 131200563 -65994869 + L1MA4A LINE L1 5606 5931 -372 3 1585 539 228 0 0 chr1 131200742 131200834 -65994598 + RSINE1 SINE B4 14 105 -60 3 1585 292 271 62 67 chr1 131201943 131202168 -65993264 - Lx9 LINE L1 -5 7639 7416 3 1585 1281 272 79 23 chr1 131202421 131202891 -65992541 - RMER5 LTR ERV1 -6 528 33 3 1586 1283 236 112 12 chr1 131204069 131204408 -65991024 + MTEb LTR MaLR 1 373 -6 3 1586 324 0 0 0 chr1 131204821 131204857 -65990575 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1586 392 351 98 19 chr1 131204930 131205186 -65990246 + B4A SINE B4 3 278 -14 3 1586 1061 317 73 29 chr1 131205398 131205989 -65989443 - L1MB8 LINE L1 -181 5997 5381 3 1586 691 301 66 33 chr1 131206037 131206370 -65989062 + L1MC1 LINE L1 5848 6191 -142 3 1586 2842 53 29 40 chr1 131206806 131207182 -65988250 - L1Md_F2 LINE L1 -2 6580 6209 3 1586 333 286 50 50 chr1 131207314 131207494 -65987938 + L1MA4 LINE L1 5743 5922 -378 3 1586 201 74 0 0 chr1 131207682 131207709 -65987723 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 1586 567 301 13 7 chr1 131207722 131207843 -65987589 + RSINE1 SINE B4 11 131 -34 3 1586 1107 94 0 0 chr1 131207843 131208023 -65987409 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1586 567 301 13 7 chr1 131208023 131208055 -65987377 + RSINE1 SINE B4 132 165 0 3 1586 576 128 0 0 chr1 131208056 131208148 -65987284 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 1586 1033 70 23 0 chr1 131208148 131208319 -65987113 + (CAGA)n Simple_repeat Simple_repeat 4 178 0 3 1586 576 128 0 0 chr1 131208319 131208343 -65987089 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1586 249 316 78 22 chr1 131208519 131208839 -65986593 - L1MD3 LINE L1 -2066 5929 5587 3 1586 21 0 0 0 chr1 131208913 131208934 -65986498 + AT_rich Low_complexity Low_complexity 1 21 0 3 1586 546 273 14 64 chr1 131209010 131209151 -65986281 - B3A SINE B2 -63 135 2 3 1586 27 49 0 0 chr1 131209154 131209195 -65986237 + AT_rich Low_complexity Low_complexity 1 41 0 3 1586 265 266 154 89 chr1 131209414 131209583 -65985849 + ORR1C2 LTR MaLR 66 245 -139 3 1586 867 275 143 22 chr1 131209941 131210478 -65984954 - L1MD3 LINE L1 -2292 3854 3249 3 1586 393 177 34 9 chr1 131210511 131210593 -65984839 + B3A SINE B2 2 91 -125 3 1586 229 232 0 35 chr1 131210694 131210752 -65984680 + CT-rich Low_complexity Low_complexity 2 57 0 3 1586 477 0 0 0 chr1 131210765 131210818 -65984614 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1586 3189 140 10 8 chr1 131210823 131211343 -65984089 + L1_Mur2 LINE L1 4896 5416 -461 4 1586 917 210 13 52 chr1 131211388 131211597 -65983835 - ID_B1 SINE B4 -23 201 1 4 1586 1056 277 70 4 chr1 131211902 131212159 -65983273 + B4A SINE B4 5 278 -14 4 1586 2517 138 3 0 chr1 131212336 131212705 -65982727 - Lx LINE L1 -96 5787 5418 4 1586 3577 98 37 6 chr1 131212680 131213192 -65982240 + Lx LINE L1 5773 6300 -354 4 1586 877 53 0 17 chr1 131213193 131213309 -65982123 + L1_Mus1 LINE L1 6451 6564 -3 4 1586 2004 142 37 9 chr1 131213360 131213686 -65981746 + Lx LINE L1 6303 6637 -17 4 1586 361 284 47 115 chr1 131213820 131213995 -65981437 - B3 SINE B2 -4 191 30 4 1586 592 33 0 71 chr1 131213995 131214094 -65981338 - L1Md_F2 LINE L1 0 6582 6491 4 1586 361 327 48 48 chr1 131214094 131214109 -65981323 - B3 SINE B2 -187 29 15 4 1586 1356 55 0 6 chr1 131214109 131214273 -65981159 + L1_Mus1 LINE L1 6292 6454 -113 4 1586 278 188 0 0 chr1 131214273 131214321 -65981111 - B3A SINE B2 -150 48 1 4 1586 452 226 41 41 chr1 131215015 131215112 -65980320 - RSINE1 SINE B4 -25 140 44 4 1586 4180 121 20 21 chr1 131215281 131215890 -65979542 - Lx2 LINE L1 -5 6992 6385 4 1586 26 0 0 0 chr1 131216541 131216567 -65978865 + AT_rich Low_complexity Low_complexity 1 26 0 4 1586 341 182 18 0 chr1 131217834 131217889 -65977543 - 5S rRNA rRNA -39 82 27 4 1586 2764 245 90 11 chr1 131217954 131218684 -65976748 - Lx7 LINE L1 -388 7308 6521 4 1586 1608 279 17 50 chr1 131218670 131219251 -65976181 - Lx7 LINE L1 -1483 6213 5652 4 1586 312 324 142 20 chr1 131219614 131219705 -65975727 - RLTR20D LTR ERVK 0 534 427 4 1586 570 15 0 0 chr1 131219705 131219772 -65975660 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1586 828 234 82 76 chr1 131219772 131220099 -65975333 - RLTR20D LTR ERVK -108 426 1 4 1586 477 310 69 34 chr1 131220228 131220432 -65975000 - ID_B1 SINE B4 -4 220 10 4 1586 271 223 23 23 chr1 131222419 131222552 -65972880 + (TA)n Simple_repeat Simple_repeat 1 133 0 4 1586 455 95 0 0 chr1 131222772 131222846 -65972586 - L1_Mus3 LINE L1 -2 6636 6563 4 1586 230 228 42 23 chr1 131223079 131223302 -65972130 + (TCTA)n Simple_repeat Simple_repeat 1 227 0 4 1586 645 325 68 58 chr1 131223315 131223593 -65971839 - MLT2B2 LTR ERVL -58 457 177 4 1586 969 116 6 25 chr1 131223583 131223742 -65971690 - URR1A DNA MER1_type -4 222 67 4 1586 239 288 0 24 chr1 131223929 131224011 -65971421 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1586 228 67 0 0 chr1 131224022 131224052 -65971380 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1586 234 312 26 0 chr1 131224060 131224137 -65971295 - MLT2B2 LTR ERVL -429 86 8 4 1586 343 261 24 34 chr1 131224544 131224641 -65970791 - B4 SINE B4 -195 97 1 4 1586 1177 320 114 10 chr1 131224721 131225407 -65970025 - L1MC3 LINE L1 -572 7213 6457 4 1586 272 264 13 91 chr1 131225644 131225798 -65969634 - L1MC3 LINE L1 -1999 5786 5645 4 1586 480 62 0 0 chr1 131225800 131225864 -65969568 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1586 730 327 44 0 chr1 131226084 131226289 -65969143 - ID_B1 SINE B4 -2 222 9 4 1586 8034 29 1 1 chr1 131226294 131227568 -65967864 - L1Md_T LINE L1 0 6582 5309 4 1586 36201 39 2 3 chr1 131227572 131233981 -65961451 - L1Md_T LINE L1 0 6585 86 4 1586 634 169 15 7 chr1 131234031 131234168 -65961264 + CT-rich Low_complexity Low_complexity 2 139 0 4 1586 808 244 14 23 chr1 131234287 131234501 -65960931 - B3 SINE B2 -4 212 1 4 1586 266 260 173 31 chr1 131234667 131234796 -65960636 - L2a LINE L2 -1 3425 3240 4 1586 1405 260 51 20 chr1 131234840 131235233 -65960199 + MTD LTR MaLR 1 405 -14 4 1586 387 0 0 0 chr1 131235260 131235303 -65960129 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1586 801 19 0 18 chr1 131235415 131235524 -65959908 + L1Md_F2 LINE L1 6464 6570 -12 4 1586 254 297 79 21 chr1 131235545 131235734 -65959698 + L1MA5 LINE L1 5941 6140 -160 4 1586 714 269 74 33 chr1 131235739 131235954 -65959478 + B4A SINE B4 5 228 -64 4 1586 554 219 25 75 chr1 131235991 131236164 -65959268 + Lx7 LINE L1 5728 5880 -1816 4 1586 405 0 0 0 chr1 131236164 131236209 -65959223 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1586 294 73 0 0 chr1 131236209 131236249 -65959183 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1586 554 234 24 122 chr1 131236249 131236339 -65959093 + Lx7 LINE L1 5881 5954 -1742 4 1586 666 138 0 0 chr1 131236369 131236478 -65958954 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1586 409 290 21 47 chr1 131236478 131236670 -65958762 + Lx7 LINE L1 5865 6051 -1645 4 1586 238 342 13 26 chr1 131236707 131236785 -65958647 + B4A SINE B4 216 292 0 4 1586 430 279 29 0 chr1 131236840 131236980 -65958452 + L1MA5 LINE L1 6149 6292 -8 4 1586 253 307 111 29 chr1 131237021 131237192 -65958240 - L2a LINE L2 -270 3105 2921 4 1586 259 316 8 26 chr1 131237246 131237363 -65958069 - MER5A1 DNA MER1_type -31 135 21 4 1586 202 316 71 31 chr1 131237626 131237724 -65957708 + MER91A DNA Tip100 5 106 -90 4 1586 204 40 0 0 chr1 131238073 131238098 -65957334 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1586 824 287 33 19 chr1 131238490 131238703 -65956729 - ID_B1 SINE B4 -1 223 8 4 1586 1024 281 158 6 chr1 131239192 131239514 -65955918 - MTE2b LTR MaLR -8 371 1 4 1586 576 272 130 45 chr1 131240610 131240879 -65954553 + B4A SINE B4 1 292 0 4 1586 326 108 15 0 chr1 131240920 131240985 -65954447 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1586 405 0 0 0 chr1 131241743 131241788 -65953644 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1586 255 61 0 0 chr1 131241798 131241831 -65953601 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 4 1586 399 21 0 0 chr1 131242286 131242334 -65953098 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1586 465 34 0 0 chr1 131242334 131242392 -65953040 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1586 558 333 10 36 chr1 131242600 131242793 -65952639 - B4 SINE B4 -90 202 15 4 1586 1189 266 147 30 chr1 131242938 131243922 -65951510 - Lx8 LINE L1 -122 7351 6196 4 1586 252 221 47 28 chr1 131245776 131245883 -65949549 + (TA)n Simple_repeat Simple_repeat 1 109 0 4 1586 385 312 0 107 chr1 131246287 131246427 -65949005 + MTEa LTR MaLR 4 128 -251 4 1586 307 276 0 0 chr1 131246440 131246516 -65948916 + RLTR18 LTR ERVK 9 84 -532 4 1586 468 0 0 0 chr1 131246519 131246571 -65948861 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1586 390 21 0 0 chr1 131246704 131246751 -65948681 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1586 419 52 17 0 chr1 131247108 131247166 -65948266 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1586 925 231 65 67 chr1 131247167 131247493 -65947939 + RLTR18 LTR ERVK 171 616 0 4 1586 1079 143 10 26 chr1 131247972 131248166 -65947266 - B2_Mm2 SINE B2 -3 192 2 4 1586 291 269 146 23 chr1 131248422 131248630 -65946802 + L1MC4 LINE L1 7416 7647 -235 4 1586 255 31 0 0 chr1 131248906 131248938 -65946494 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1586 413 200 23 34 chr1 131250176 131250264 -65945168 - MTE2a LTR MaLR -5 374 288 4 1586 539 241 52 8 chr1 131250263 131250397 -65945035 + B4 SINE B4 149 288 -4 4 1586 396 77 0 0 chr1 131251119 131251171 -65944261 - HAL1-3A_ME LINE L1 -833 2025 1974 4 1586 270 0 0 0 chr1 131251171 131251201 -65944231 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1586 439 181 11 21 chr1 131251218 131251315 -65944117 - B4 SINE B4 0 292 212 4 1586 370 162 27 0 chr1 131251333 131251444 -65943988 + (TCTG)n Simple_repeat Simple_repeat 3 116 0 4 1586 644 309 58 29 chr1 131251444 131251462 -65943970 - B4A SINE B4 -44 248 229 4 1586 462 18 0 0 chr1 131251462 131251517 -65943915 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1586 724 309 58 29 chr1 131251517 131251738 -65943694 - B4 SINE B4 -64 228 2 4 1586 1614 77 9 0 chr1 131251766 131251988 -65943444 - L1_Mus2 LINE L1 -2 6564 6341 4 1586 802 231 34 79 chr1 131252636 131252989 -65942443 + Lx2B LINE L1 6660 6996 -4 4 1586 661 254 16 36 chr1 131252989 131253242 -65942190 - Lx7 LINE L1 -1788 5908 5661 4 1586 682 246 4 4 chr1 131254958 131255229 -65940203 + CT-rich Low_complexity Low_complexity 1 271 0 4 1586 5893 80 50 1 chr1 131255231 131256050 -65939382 - Lx3_Mus LINE L1 -12 6997 6139 4 1586 714 56 0 0 chr1 131256051 131256159 -65939273 + Lx3_Mus LINE L1 6091 6198 -811 4 1586 288 0 0 0 chr1 131256303 131256335 -65939097 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1586 509 296 91 33 chr1 131256640 131256916 -65938516 - B4A SINE B4 0 292 1 4 1586 398 99 0 40 chr1 131257094 131257117 -65938315 - L1Md_F2 LINE L1 -710 5874 5854 4 1586 4122 69 0 34 chr1 131257117 131257671 -65937761 - L1_Mus2 LINE L1 -3 6563 6029 4 1586 421 44 0 10 chr1 131257671 131257735 -65937697 - L1Md_F2 LINE L1 -1156 5853 5793 4 1586 685 248 56 21 chr1 131258098 131258242 -65937190 + RSINE1 SINE B4 2 150 -15 4 1586 356 323 43 37 chr1 131258332 131258493 -65936939 - B3A SINE B2 0 216 55 4 1586 1003 255 159 0 chr1 131258531 131258857 -65936575 - MTE2b LTR MaLR 0 379 2 4 1586 261 83 0 0 chr1 131259058 131259094 -65936338 - U2 snRNA snRNA -152 36 1 4 1586 238 281 24 24 chr1 131259637 131259761 -65935671 + GA-rich Low_complexity Low_complexity 1 124 0 4 1586 397 300 19 6 chr1 131259787 131259948 -65935484 + GA-rich Low_complexity Low_complexity 2 164 0 4 1586 234 143 0 0 chr1 131260067 131260116 -65935316 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1586 191 289 79 40 chr1 131260382 131260508 -65934924 + L2 LINE L2 2509 2639 -780 4 1586 232 307 6 196 chr1 131261521 131261679 -65933753 - MIR SINE MIR -60 148 21 4 1586 528 59 0 0 chr1 131261976 131262044 -65933388 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 4 1586 480 111 0 0 chr1 131262094 131262175 -65933257 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1586 444 19 0 0 chr1 131262294 131262347 -65933085 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1586 4075 61 4 8 chr1 131262887 131263414 -65932018 + L1_Mus1 LINE L1 6043 6567 0 4 1586 2613 171 13 110 chr1 131263461 131264131 -65931301 - Lx2 LINE L1 0 6997 6393 4 1586 448 300 174 64 chr1 131265528 131265952 -65929480 - MLT2B2 LTR ERVL -44 471 1 4 1586 210 272 93 90 chr1 131266007 131266176 -65929256 - MIR SINE MIR -43 225 58 4 1586 226 271 124 10 chr1 131266906 131267003 -65928429 + Lx9 LINE L1 5825 5932 -1712 4 1586 407 68 17 0 chr1 131267007 131267066 -65928366 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1586 235 295 112 11 chr1 131267311 131267400 -65928032 - MamRep38 DNA hAT 0 295 198 4 1586 733 304 27 14 chr1 131267698 131267918 -65927514 + B4 SINE B4 3 225 -67 4 1586 253 270 20 20 chr1 131267999 131268101 -65927331 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 1586 190 182 55 0 chr1 131268102 131268157 -65927275 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 5 1586 589 308 93 23 chr1 131268688 131268947 -65926485 - RMER15 LTR ERVL 0 575 299 5 1586 268 356 37 15 chr1 131269554 131269688 -65925744 + 7SK RNA RNA 4 140 -191 5 1586 1448 292 98 8 chr1 131270445 131271039 -65924393 - Lx8 LINE L1 -5 7468 6822 5 1586 381 355 48 0 chr1 131271288 131271454 -65923978 + L2 LINE L2 2159 2332 -1087 5 1586 500 357 46 46 chr1 131271563 131271757 -65923675 - B3A SINE B2 0 198 5 5 1586 249 341 0 24 chr1 131272528 131272612 -65922820 - LTR81A LTR ERV1? -1134 216 135 5 1586 566 265 12 47 chr1 131272806 131272976 -65922456 + Charlie12 DNA MER1_type 2710 2873 0 5 1586 205 89 22 22 chr1 131273141 131273187 -65922245 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1586 2503 68 12 3 chr1 131273361 131273702 -65921730 + L1_Mus2 LINE L1 6223 6566 0 5 1586 570 287 48 24 chr1 131274137 131274305 -65921127 + B3A SINE B2 1 172 -26 5 1586 877 74 15 0 chr1 131274315 131274450 -65920982 + (CA)n Simple_repeat Simple_repeat 1 137 0 5 1586 198 103 0 0 chr1 131274450 131274479 -65920953 + (CCA)n Simple_repeat Simple_repeat 1 29 0 5 1586 22 56 0 0 chr1 131276102 131276138 -65919294 + AT_rich Low_complexity Low_complexity 1 36 0 5 1586 31 26 0 0 chr1 131276616 131276654 -65918778 + AT_rich Low_complexity Low_complexity 1 38 0 5 1586 274 326 79 0 chr1 131276689 131276778 -65918654 - B1F1 SINE Alu -2 147 52 5 1586 303 233 76 22 chr1 131276810 131276902 -65918530 - LTR33A LTR ERVL -2 518 422 5 1586 245 309 217 49 chr1 131277234 131277418 -65918014 + LTR16A LTR ERVL 1 215 -236 5 1586 388 372 23 8 chr1 131277651 131277807 -65917625 + B3A SINE B2 2 170 -46 5 1586 252 200 0 0 chr1 131277834 131277889 -65917543 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1586 596 0 48 0 chr1 131277892 131277976 -65917456 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 5 1586 298 328 77 8 chr1 131281086 131281203 -65914229 - MER5A DNA MER1_type -1 188 64 5 1586 296 301 27 64 chr1 131281780 131281890 -65913542 - MIRb SINE MIR -91 177 72 5 1586 274 295 133 7 chr1 131282203 131282353 -65913079 - MIRb SINE MIR -2 266 98 5 1586 465 19 0 0 chr1 131283005 131283059 -65912373 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1586 552 254 198 50 chr1 131283085 131283426 -65912006 + MTD LTR MaLR 8 419 0 5 1586 21 36 0 0 chr1 131283846 131283874 -65911558 + AT_rich Low_complexity Low_complexity 1 28 0 5 1586 313 330 175 18 chr1 131284034 131284262 -65911170 - HAL1 LINE L1 -797 1710 1447 5 1586 459 317 34 14 chr1 131285093 131285240 -65910192 + MLT1E2 LTR MaLR 80 229 -398 5 1586 269 26 26 0 chr1 131285413 131285451 -65909981 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1586 352 329 122 53 chr1 131285464 131286100 -65909332 - L1MC4 LINE L1 -499 7543 6864 5 1586 343 329 90 24 chr1 131286374 131286586 -65908846 - L1MC4 LINE L1 -1207 6675 6450 5 1586 2248 166 13 5 chr1 131286647 131287028 -65908404 + MTC LTR MaLR 1 384 -37 5 1586 558 396 14 0 chr1 131287337 131287544 -65907888 - B4A SINE B4 -82 210 1 5 1586 21 0 0 0 chr1 131287550 131287571 -65907861 + AT_rich Low_complexity Low_complexity 1 21 0 5 1586 1691 66 0 4 chr1 131287988 131288217 -65907215 - L1_Mus1 LINE L1 -301 6266 6039 5 1586 391 118 12 50 chr1 131288217 131288297 -65907135 + L1_Mus1 LINE L1 6489 6565 -2 5 1586 302 51 0 0 chr1 131288310 131288349 -65907083 - L1_Mus1 LINE L1 -226 6341 6303 5 1586 661 95 0 17 chr1 131288349 131288467 -65906965 + L1Md_F2 LINE L1 6466 6581 -1 5 1586 944 235 45 143 chr1 131288651 131289069 -65906363 - MTE2a LTR MaLR -2 377 1 5 1586 204 321 0 97 chr1 131289192 131289316 -65906116 + L2b LINE L2 3052 3163 -212 5 1586 708 282 26 26 chr1 131289526 131289719 -65905713 + B4 SINE B4 3 195 -97 5 1586 618 82 0 0 chr1 131289722 131289807 -65905625 + (CAAAC)n Simple_repeat Simple_repeat 2 86 0 5 1586 402 21 0 0 chr1 131289839 131289886 -65905546 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1586 387 0 0 0 chr1 131290600 131290643 -65904789 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1586 4462 10 0 0 chr1 131290656 131291149 -65904283 - MT2_Mm LTR ERVL 0 493 1 5 1586 302 0 0 0 chr1 131291149 131291187 -65904245 - MERVL-int LTR ERVL 0 5485 5448 5 1586 390 167 46 35 chr1 131291187 131291274 -65904158 - ORR1A3-int LTR MaLR -1323 640 553 5 1586 25195 49 13 5 chr1 131291274 131296479 -65898953 - MERVL-int LTR ERVL -125 5360 1 5 1586 4462 10 0 0 chr1 131296479 131296972 -65898460 - MT2_Mm LTR ERVL 0 493 1 5 1586 382 343 14 50 chr1 131297015 131297236 -65898196 - B4 SINE B4 -78 214 2 5 1586 651 318 15 5 chr1 131297670 131297872 -65897560 - ID_B1 SINE B4 -15 209 6 5 1586 215 277 80 60 chr1 131298043 131298143 -65897289 - L3b LINE CR1 -205 277 176 5 1586 293 316 0 28 chr1 131299539 131299636 -65895796 + ID4 SINE ID 5 97 -55 5 1586 189 174 14 28 chr1 131299822 131299893 -65895539 + GA-rich Low_complexity Low_complexity 3 72 0 5 1586 556 245 12 77 chr1 131300430 131300598 -65894834 - MTD LTR MaLR 0 419 263 5 1586 466 293 45 77 chr1 131300653 131300878 -65894554 - MTD LTR MaLR -158 261 29 5 1586 360 317 126 0 chr1 131300961 131301128 -65894304 - RMER30 DNA MER1_type -2 200 13 5 1586 272 314 339 31 chr1 131301151 131301440 -65893992 + L2a LINE L2 2511 2888 -531 5 1586 251 307 53 0 chr1 131301472 131301547 -65893885 + L2a LINE L2 3036 3114 -312 5 1586 187 301 54 14 chr1 131301564 131301638 -65893794 + L2a LINE L2 3350 3426 0 5 1586 590 241 99 25 chr1 131301673 131301875 -65893557 - MTD LTR MaLR -21 398 167 5 1586 222 91 0 0 chr1 131301875 131301908 -65893524 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1586 9022 44 2 6 chr1 131301915 131303776 -65891656 - L1Md_F2 LINE L1 -2 6580 4725 5 1586 455 327 35 12 chr1 131303776 131303946 -65891486 - MTD LTR MaLR -218 201 28 5 1586 1155 133 99 0 chr1 131304051 131304162 -65891270 - Lx2 LINE L1 0 6997 6884 5 1586 189 0 0 0 chr1 131304162 131304183 -65891249 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 5 1586 1155 133 99 0 chr1 131304183 131304282 -65891150 - Lx2 LINE L1 -114 6883 6768 5 1586 495 351 29 0 chr1 131304745 131304916 -65890516 - MLT1F LTR MaLR -2 546 371 5 1586 23 33 0 0 chr1 131304947 131304977 -65890455 + AT_rich Low_complexity Low_complexity 1 30 0 5 1586 910 222 65 10 chr1 131304977 131305177 -65890255 - B3 SINE B2 -5 211 1 5 1586 739 319 34 34 chr1 131306069 131306338 -65889094 + MTD LTR MaLR 2 270 -149 5 1586 546 214 19 45 chr1 131306391 131306545 -65888887 + MTD LTR MaLR 234 404 -15 5 1586 796 352 34 48 chr1 131307807 131308476 -65886956 - Lx8 LINE L1 -214 7259 6600 5 1586 889 239 8 80 chr1 131308600 131308837 -65886595 - B4 SINE B4 -60 232 13 5 1586 387 105 0 0 chr1 131309186 131309243 -65886189 + (T)n Simple_repeat Simple_repeat 1 57 0 5 1586 546 304 19 0 chr1 131310022 131310183 -65885249 - RSINE1 SINE B4 0 165 2 5 1586 387 0 0 0 chr1 131310517 131310560 -65884872 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1586 724 263 25 19 chr1 131310567 131310726 -65884706 - B3A SINE B2 -17 181 22 5 1586 229 253 63 42 chr1 131311070 131311165 -65884267 - MamSINE1 SINE tRNA -128 162 66 5 1586 2086 122 44 9 chr1 131311826 131312142 -65883290 - ORR1A2 LTR MaLR 0 327 1 5 1586 340 282 13 13 chr1 131312274 131312353 -65883079 - ID4 SINE ID -1 82 4 5 1586 371 306 9 27 chr1 131312361 131312472 -65882960 - PB1D10 SINE Alu -8 109 1 5 1586 28 29 0 0 chr1 131312703 131312738 -65882694 + AT_rich Low_complexity Low_complexity 1 35 0 5 1586 512 221 90 69 chr1 131312745 131312934 -65882498 - B3A SINE B2 -1 197 5 5 1586 618 284 39 35 chr1 131313914 131314173 -65881259 + L1MA4 LINE L1 5533 5792 -508 5 1586 654 335 45 21 chr1 131314242 131314711 -65880721 + L1MA4 LINE L1 5798 6277 -23 5 1586 4204 206 68 13 chr1 131314935 131315941 -65879491 - Lx9 LINE L1 -416 7228 6168 5 1586 943 221 7 52 chr1 131315989 131316183 -65879249 + Lx9 LINE L1 7242 7424 -220 5 1586 378 0 0 0 chr1 131316183 131316225 -65879207 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1586 261 0 0 0 chr1 131316225 131316253 -65879179 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1586 943 221 7 52 chr1 131316253 131316329 -65879103 + Lx9 LINE L1 7425 7500 -144 5 1586 24 85 0 0 chr1 131316428 131316487 -65878945 + AT_rich Low_complexity Low_complexity 1 59 0 5 1586 26 30 0 0 chr1 131316817 131316850 -65878582 + AT_rich Low_complexity Low_complexity 1 33 0 5 1586 22 35 0 0 chr1 131317244 131317273 -65878159 + AT_rich Low_complexity Low_complexity 1 29 0 5 1586 180 0 0 0 chr1 131317591 131317611 -65877821 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1586 331 338 99 53 chr1 131317896 131318389 -65877043 - L2 LINE L2 -797 2622 2107 5 1586 1930 216 53 25 chr1 131319081 131319552 -65875880 - Lx4B LINE L1 -198 6860 6377 5 1586 30 27 0 0 chr1 131319645 131319682 -65875750 + AT_rich Low_complexity Low_complexity 1 37 0 5 1586 207 312 0 13 chr1 131320071 131320149 -65875283 + CT-rich Low_complexity Low_complexity 3 79 0 5 1586 717 12 0 0 chr1 131320269 131320351 -65875081 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1586 252 0 0 0 chr1 131320351 131320378 -65875054 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1586 514 277 8 8 chr1 131320720 131320840 -65874592 + B1F SINE Alu 29 148 -1 5 1586 24 32 0 0 chr1 131321192 131321223 -65874209 + AT_rich Low_complexity Low_complexity 1 31 0 5 1586 4141 206 95 31 chr1 131321470 131322539 -65872893 - Lx5 LINE L1 -3 7047 5910 5 1586 298 329 0 35 chr1 131324879 131324964 -65870468 + Zaphod2 DNA Tip100 3442 3523 -1 5 1586 244 389 28 0 chr1 131325258 131325366 -65870066 + L4 LINE RTE 1430 1540 -489 5 1586 834 294 54 66 chr1 131325572 131325889 -65869543 - MTE2a LTR MaLR -8 371 59 5 1586 576 121 0 0 chr1 131326151 131326242 -65869190 + (TCTG)n Simple_repeat Simple_repeat 2 92 0 5 1586 204 228 0 0 chr1 131326246 131326303 -65869129 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1586 548 53 13 0 chr1 131327684 131327760 -65867672 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 5 1586 369 43 0 0 chr1 131327765 131327812 -65867620 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1586 578 281 13 27 chr1 131327816 131327966 -65867466 - B3A SINE B2 -50 148 1 6 1586 672 266 65 0 chr1 131328276 131328445 -65866987 + B3A SINE B2 3 182 -16 6 1586 354 45 0 0 chr1 131329287 131329331 -65866101 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1586 671 302 61 20 chr1 131329373 131329569 -65865863 - B4 SINE B4 -87 205 2 6 1586 1096 95 0 0 chr1 131330126 131330274 -65865158 - B1_Mus1 SINE Alu 0 148 1 6 1586 198 171 0 0 chr1 131330507 131330548 -65864884 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1586 859 248 31 20 chr1 131331512 131331761 -65863671 - ORR1D1 LTR MaLR -114 256 5 6 1586 400 273 34 0 chr1 131331867 131331955 -65863477 + RSINE1 SINE B4 34 124 -41 6 1586 297 0 0 0 chr1 131331955 131331988 -65863444 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1586 200 250 19 0 chr1 131331989 131332041 -65863391 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 6 1586 498 33 0 0 chr1 131332198 131332258 -65863174 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1586 387 279 7 7 chr1 131332401 131332538 -65862894 - L1MB4 LINE L1 -8 6172 6036 6 198 33643 36 0 0 chr1 131332865 131338501 -65856931 + L1Md_T LINE L1 1 5589 -297 6 1587 9043 5 0 0 chr1 131338501 131339535 -65855897 + L1Md_T LINE L1 5590 6585 0 6 1587 789 235 16 16 chr1 131339626 131339808 -65855624 - B3A SINE B2 -16 182 1 6 1587 199 299 119 0 chr1 131340552 131340619 -65854813 + L2a LINE L2 3302 3376 -50 6 1587 568 13 0 48 chr1 131340677 131340760 -65854672 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 6 1587 213 224 20 0 chr1 131340760 131340809 -65854623 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1587 232 261 0 28 chr1 131341060 131341131 -65854301 + CT-rich Low_complexity Low_complexity 1 69 0 6 1587 404 281 22 0 chr1 131341166 131341255 -65854177 - PB1D7 SINE Alu -26 94 4 6 1587 252 0 0 0 chr1 131341911 131341939 -65853493 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1587 1336 272 88 22 chr1 131341939 131342303 -65853129 + MTD LTR MaLR 18 405 -14 6 1587 203 61 0 29 chr1 131342663 131342697 -65852735 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1587 432 242 29 79 chr1 131342939 131343078 -65852354 - B1F SINE Alu -3 146 15 6 1587 228 341 117 32 chr1 131343764 131343952 -65851480 - MLT1G LTR MaLR 0 591 388 6 1587 543 248 45 23 chr1 131344239 131344371 -65851061 - B4 SINE B4 -4 288 154 6 1587 2700 133 118 0 chr1 131344374 131344889 -65850543 + Lx3B LINE L1 3758 4333 -1544 6 1587 737 127 0 0 chr1 131344884 131345010 -65850422 + Lx3B LINE L1 4544 4669 -1208 6 1587 2421 98 18 8 chr1 131345007 131345388 -65850044 + Lx LINE L1 6270 6654 0 6 1587 6976 169 31 13 chr1 131345428 131347662 -65847770 + Lx3B LINE L1 4686 6970 -3 6 1587 1081 152 33 0 chr1 131347701 131347885 -65847547 + B2_Mm2 SINE B2 1 190 -5 6 1587 453 36 0 0 chr1 131347953 131348008 -65847424 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1587 221 327 128 98 chr1 131348446 131348515 -65846917 + B4 SINE B4 52 119 -173 6 1587 414 0 0 0 chr1 131348515 131348561 -65846871 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1587 435 38 0 0 chr1 131348561 131348613 -65846819 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1587 221 327 128 98 chr1 131348613 131348776 -65846656 + B4 SINE B4 120 291 -1 6 1587 4180 83 22 2 chr1 131350274 131350864 -65844568 - L1Md_F2 LINE L1 -206 6376 5775 6 1587 1504 92 51 0 chr1 131350864 131351081 -65844351 + L1_Mus1 LINE L1 6340 6567 0 6 1587 1119 72 0 0 chr1 131351099 131351237 -65844195 + B1_Mus2 SINE Alu 1 138 -9 6 1587 640 318 67 50 chr1 131351340 131351737 -65843695 + MTE2b LTR MaLR 1 398 -21 6 1587 396 0 0 0 chr1 131352034 131352078 -65843354 + (CTA)n Simple_repeat Simple_repeat 1 44 0 6 1587 620 326 78 37 chr1 131352229 131352398 -65843034 - L1MB8 LINE L1 -183 5995 5823 6 1587 526 295 103 15 chr1 131352398 131352601 -65842831 - ID_B1 SINE B4 -2 222 2 6 1587 620 326 78 37 chr1 131352601 131352653 -65842779 - L1MB8 LINE L1 -356 5822 5776 6 1587 2998 63 0 3 chr1 131352653 131353033 -65842399 - L1_Mus2 LINE L1 0 6566 6188 6 1587 620 328 92 37 chr1 131353033 131353884 -65841548 - L1MB8 LINE L1 -403 5775 4869 6 1587 180 0 0 0 chr1 131353953 131353973 -65841459 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1587 468 0 0 0 chr1 131353973 131354024 -65841408 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1587 440 35 17 0 chr1 131354259 131354317 -65841115 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 6 1587 278 247 132 13 chr1 131354540 131354692 -65840740 - L1MB8 LINE L1 -1658 4488 4319 6 1587 361 328 35 9 chr1 131354766 131354880 -65840552 + PB1 SINE Alu 9 125 -2 6 1587 276 30 0 0 chr1 131356423 131356456 -65838976 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1587 306 0 0 0 chr1 131359234 131359268 -65836164 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1587 558 302 64 5 chr1 131359268 131359471 -65835961 - ID_B1 SINE B4 -8 216 2 6 1587 3601 131 122 3 chr1 131360134 131360740 -65834692 + RLTR33 LTR ERVK 1 678 0 6 1587 2134 162 27 0 chr1 131361601 131361966 -65833466 - Lx2 LINE L1 0 6997 6623 6 1587 439 333 0 0 chr1 131362345 131362492 -65832940 + RSINE1 SINE B4 2 148 -17 6 1587 486 49 0 0 chr1 131363736 131363797 -65831635 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1587 834 140 0 0 chr1 131365505 131365684 -65829748 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1587 588 95 0 0 chr1 131365705 131365789 -65829643 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 6 1587 312 305 174 8 chr1 131365817 131365949 -65829483 + RSINE1 SINE B4 4 157 -8 6 1587 23 33 0 0 chr1 131365967 131365997 -65829435 + AT_rich Low_complexity Low_complexity 1 30 0 6 1587 1294 255 80 21 chr1 131366110 131366486 -65828946 - MTD LTR MaLR -2 417 20 6 1587 483 18 0 0 chr1 131366486 131366542 -65828890 + (CAA)n Simple_repeat Simple_repeat 2 57 0 6 1587 192 282 89 13 chr1 131367662 131367741 -65827691 + MIR SINE MIR 110 194 -68 6 1587 559 276 91 25 chr1 131367875 131368072 -65827360 + B3 SINE B2 1 210 -6 6 1587 217 395 7 7 chr1 131368702 131368837 -65826595 - MIR SINE MIR -79 183 49 6 1587 547 258 51 8 chr1 131369053 131369185 -65826247 - ID_B1 SINE B4 -53 171 40 6 1587 680 301 33 4 chr1 131369235 131369588 -65825844 - L1MA5 LINE L1 -271 5885 5522 6 1587 24 0 0 0 chr1 131370875 131370899 -65824533 + AT_rich Low_complexity Low_complexity 1 24 0 6 1587 410 328 107 78 chr1 131370901 131371172 -65824260 - B4 SINE B4 -12 280 2 6 1587 350 91 0 18 chr1 131371813 131371869 -65823563 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 1587 358 198 54 36 chr1 131371870 131371996 -65823436 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 6 1587 396 0 0 0 chr1 131371996 131372040 -65823392 + (TATG)n Simple_repeat Simple_repeat 4 47 0 6 1587 358 198 54 36 chr1 131372040 131372081 -65823351 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 6 1587 248 20 39 39 chr1 131373176 131373227 -65822205 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1587 820 254 0 0 chr1 131374246 131374411 -65821021 - MTEa LTR MaLR -45 334 170 6 1587 2391 243 40 12 chr1 131374439 131375017 -65820415 - Lx5 LINE L1 0 7050 6457 6 1587 749 291 15 0 chr1 131375017 131375216 -65820216 - MTEa LTR MaLR -177 202 1 6 1587 444 292 119 64 chr1 131375221 131375708 -65819724 - L1MB2 LINE L1 -28 6143 5630 6 1587 201 74 0 0 chr1 131375721 131375748 -65819684 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1587 261 0 0 0 chr1 131375776 131375805 -65819627 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1587 229 209 27 82 chr1 131375805 131375878 -65819554 - ID4_ SINE ID -13 70 2 6 1587 376 291 20 26 chr1 131376106 131376258 -65819174 - Lx6 LINE L1 -27 7433 7283 6 1587 909 216 53 57 chr1 131377148 131377524 -65817908 - RMER20A LTR ERVK -394 466 141 6 1587 355 87 29 0 chr1 131377527 131377596 -65817836 + (TTTTG)n Simple_repeat Simple_repeat 3 73 0 6 1587 874 124 15 8 chr1 131377609 131377739 -65817693 - RMER20A LTR ERVK -385 131 1 6 1587 326 23 23 0 chr1 131377743 131377786 -65817646 + (TATG)n Simple_repeat Simple_repeat 3 46 0 6 1587 717 333 21 21 chr1 131380514 131380743 -65814689 + B4A SINE B4 2 230 -62 6 1587 468 289 114 30 chr1 131380743 131380875 -65814557 + RSINE1 SINE B4 3 145 -20 6 1587 236 320 69 69 chr1 131381219 131381350 -65814082 - MIRb SINE MIR -111 157 27 6 1587 239 258 16 0 chr1 131381693 131381755 -65813677 + GA-rich Low_complexity Low_complexity 2 64 0 6 1587 374 36 36 0 chr1 131381849 131381904 -65813528 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 6 1587 1116 59 0 0 chr1 131381904 131382040 -65813392 - B1_Mus2 SINE Alu -11 136 1 6 1587 556 272 14 51 chr1 131382040 131382257 -65813175 + Lx6 LINE L1 7244 7452 -8 6 1587 676 189 0 22 chr1 131382352 131382536 -65812896 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1587 461 131 12 0 chr1 131382579 131382663 -65812769 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1587 272 361 47 27 chr1 131382694 131382842 -65812590 - B3A SINE B2 -46 152 2 6 1587 328 327 0 10 chr1 131383155 131383257 -65812175 + Tigger5 DNA MER2_type 2306 2406 0 6 1587 670 266 10 71 chr1 131383436 131383634 -65811798 + B3A SINE B2 1 186 -12 6 1587 30 27 0 0 chr1 131383634 131383671 -65811761 + AT_rich Low_complexity Low_complexity 1 37 0 6 1587 610 294 34 0 chr1 131385302 131385479 -65809953 - B3A SINE B2 -15 183 1 6 1587 1317 81 21 5 chr1 131385838 131386024 -65809408 - B2_Mm2 SINE B2 -6 189 1 6 1587 1738 109 27 17 chr1 131386029 131386327 -65809105 - Lx LINE L1 -1 6653 6353 6 1587 895 49 0 16 chr1 131386327 131386452 -65808980 + Lx LINE L1 6223 6345 -309 6 1587 433 258 204 39 chr1 131386464 131386647 -65808785 + B4A SINE B4 49 269 -23 6 1587 378 0 0 0 chr1 131386647 131386689 -65808743 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1587 433 258 204 39 chr1 131386689 131386711 -65808721 + B4A SINE B4 270 288 -4 6 1587 366 123 0 0 chr1 131386718 131386775 -65808657 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1587 271 258 10 30 chr1 131386820 131386920 -65808512 + (CATA)n Simple_repeat Simple_repeat 3 100 0 6 1587 195 139 0 0 chr1 131386944 131386980 -65808452 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 6 1587 288 0 0 0 chr1 131389205 131389237 -65806195 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1587 335 364 114 6 chr1 131389487 131389653 -65805779 - B4 SINE B4 -73 219 36 7 1587 429 20 0 0 chr1 131390025 131390075 -65805357 + (TAA)n Simple_repeat Simple_repeat 1 50 0 7 1587 737 269 166 36 chr1 131390266 131390512 -65804920 - B4 SINE B4 -2 290 13 7 1587 767 260 234 0 chr1 131391019 131391254 -65804178 + B4A SINE B4 3 292 0 7 1587 291 93 0 0 chr1 131391827 131391870 -65803562 + (TAG)n Simple_repeat Simple_repeat 1 43 0 7 1587 287 113 0 19 chr1 131391907 131391961 -65803471 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1587 510 324 63 31 chr1 131392048 131392239 -65803193 - B3A SINE B2 0 198 2 7 1587 204 67 0 0 chr1 131393114 131393144 -65802288 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1587 285 89 0 0 chr1 131393243 131393288 -65802144 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1587 333 0 0 0 chr1 131395230 131395267 -65800165 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1587 242 315 71 18 chr1 131395365 131395478 -65799954 - Lx8 LINE L1 -166 7307 7189 7 1587 189 0 0 0 chr1 131396307 131396328 -65799104 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 7 1587 186 43 0 0 chr1 131396690 131396713 -65798719 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1587 268 331 19 50 chr1 131396789 131396948 -65798484 - MTEa LTR MaLR -14 365 212 7 1587 302 215 0 70 chr1 131397138 131397238 -65798194 + (CAGAGA)n Simple_repeat Simple_repeat 3 95 0 7 1587 660 36 0 0 chr1 131397238 131397321 -65798111 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1587 531 125 0 10 chr1 131397382 131397479 -65797953 - Lx9 LINE L1 -8 7636 7541 7 1587 369 237 0 134 chr1 131397577 131397689 -65797743 - MTEa LTR MaLR -282 97 1 7 1587 225 298 104 21 chr1 131397809 131397905 -65797527 + MLT1K LTR MaLR 337 440 -155 7 1587 289 337 118 10 chr1 131398156 131398351 -65797081 + ID_B1 SINE B4 1 216 -8 7 1587 588 278 56 39 chr1 131399122 131399302 -65796130 - B3A SINE B2 -1 197 15 7 1587 643 254 0 43 chr1 131399310 131399338 -65796094 - B1_Mur1 SINE Alu -7 142 119 7 1587 1957 197 49 24 chr1 131399338 131399749 -65795683 - MTC LTR MaLR 0 421 1 7 1587 643 254 0 43 chr1 131399749 131399860 -65795572 - B1_Mur1 SINE Alu -31 118 9 7 1587 421 237 139 44 chr1 131400174 131400311 -65795121 - MLT1A1 LTR MaLR 0 408 259 7 1587 397 344 13 0 chr1 131402092 131402246 -65793186 - RMER15-int LTR ERVL -2835 2164 2009 7 1587 546 216 104 0 chr1 131402240 131402374 -65793058 + RMER15-int LTR ERVL 503 650 -4349 7 1587 25 0 0 0 chr1 131402421 131402446 -65792986 + AT_rich Low_complexity Low_complexity 1 25 0 7 1587 339 252 29 10 chr1 131402446 131402550 -65792882 + RMER15-int LTR ERVL 670 775 -4224 7 1587 234 0 0 0 chr1 131402573 131402599 -65792833 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1587 354 315 39 0 chr1 131402601 131402731 -65792701 - Lx6 LINE L1 -212 7248 7114 7 1587 6383 72 1 4 chr1 131402773 131403996 -65791436 + L1Md_F2 LINE L1 396 1619 -4264 7 1587 17479 70 0 2 chr1 131404000 131406426 -65789006 + L1Md_F2 LINE L1 3166 5586 -297 7 1587 8169 45 1 1 chr1 131406426 131407418 -65788014 + L1Md_F2 LINE L1 5587 6578 -4 7 1587 342 225 81 0 chr1 131407418 131407529 -65787903 + Lx6 LINE L1 7330 7449 -11 7 1587 405 0 0 0 chr1 131407696 131407741 -65787691 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1587 959 315 11 25 chr1 131408530 131408807 -65786625 + B4A SINE B4 2 274 -18 7 1587 396 0 0 0 chr1 131408810 131408854 -65786578 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1587 235 45 68 0 chr1 131409182 131409226 -65786206 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1587 442 330 15 0 chr1 131409399 131409599 -65785833 - Lx9 LINE L1 -176 7468 7266 7 1587 313 263 115 10 chr1 131410256 131410352 -65785080 + B3A SINE B2 2 107 -91 7 1587 306 87 0 0 chr1 131410352 131410398 -65785034 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1587 339 277 75 29 chr1 131410591 131410940 -65784492 + L1ME3B LINE L1 5682 6046 -194 7 1587 532 128 38 0 chr1 131411833 131411966 -65783466 + (TAGA)n Simple_repeat Simple_repeat 3 140 0 7 1587 211 324 36 14 chr1 131411980 131412118 -65783314 + (TGGA)n Simple_repeat Simple_repeat 4 144 0 7 1587 564 170 18 33 chr1 131412227 131412411 -65783021 + (TAGA)n Simple_repeat Simple_repeat 1 181 0 7 1587 243 0 0 0 chr1 131412411 131412438 -65782994 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1587 282 254 28 51 chr1 131412438 131412495 -65782937 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 7 1587 842 323 39 0 chr1 131413179 131413436 -65781996 + B4 SINE B4 9 275 -17 7 1587 314 226 52 35 chr1 131414420 131414594 -65780838 + (CATA)n Simple_repeat Simple_repeat 2 178 0 7 1587 306 196 45 36 chr1 131414543 131414654 -65780778 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 1587 501 253 274 37 chr1 131417719 131418048 -65777384 + MTD LTR MaLR 13 419 0 7 1587 394 276 61 61 chr1 131418404 131418535 -65776897 + B1F SINE Alu 1 131 -18 7 1587 733 308 96 17 chr1 131418560 131418904 -65776528 + Lx8 LINE L1 7098 7468 -5 7 1587 251 287 0 44 chr1 131418827 131418918 -65776514 + RMER1C Other Other 1243 1329 -13 7 1587 744 271 39 0 chr1 131420756 131420959 -65774473 + ID_B1 SINE B4 1 211 -13 7 1587 358 326 166 0 chr1 131420977 131421170 -65774262 - L1MB7 LINE L1 -18 6166 5942 7 1587 781 278 81 37 chr1 131421422 131421695 -65773737 + B4 SINE B4 4 288 -4 7 1587 1136 67 0 32 chr1 131421715 131421900 -65773532 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1587 684 284 30 5 chr1 131422914 131423116 -65772316 - ID_B1 SINE B4 -16 208 2 7 1587 373 105 0 0 chr1 131425077 131425134 -65770298 - L1Md_F2 LINE L1 -387 6195 6139 7 1587 501 318 112 36 chr1 131425870 131426121 -65769311 - RMER15 LTR ERVL 0 575 306 7 1587 312 303 35 35 chr1 131426161 131426274 -65769158 - RMER15 LTR ERVL -437 138 26 7 1587 343 362 114 42 chr1 131426382 131426688 -65768744 - LTR16C LTR ERVL -10 479 152 7 1587 615 340 0 55 chr1 131426849 131427051 -65768381 - B3A SINE B2 0 198 8 7 1587 955 283 62 1 chr1 131427886 131428184 -65767248 - MTEa LTR MaLR -8 371 56 7 1587 450 0 0 0 chr1 131429146 131429196 -65766236 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 7 1587 216 0 0 0 chr1 131429197 131429221 -65766211 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 7 1587 351 0 0 0 chr1 131429332 131429371 -65766061 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1587 234 0 0 0 chr1 131429563 131429589 -65765843 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1587 1325 275 105 22 chr1 131429710 131430263 -65765169 - Lx7 LINE L1 -405 7291 6693 7 1587 389 306 43 32 chr1 131430329 131430398 -65765034 - Lx9 LINE L1 -50 7594 7518 7 1587 341 109 0 15 chr1 131430398 131430463 -65764969 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1587 389 306 43 32 chr1 131430463 131430646 -65764786 - Lx9 LINE L1 -127 7517 7339 7 1587 306 50 0 0 chr1 131430794 131430834 -65764598 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1587 23 33 0 0 chr1 131430978 131431008 -65764424 + AT_rich Low_complexity Low_complexity 1 30 0 7 1587 252 0 0 0 chr1 131432510 131432538 -65762894 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1587 201 143 0 0 chr1 131433019 131433054 -65762378 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1587 201 206 19 10 chr1 131433054 131433157 -65762275 + (CA)n Simple_repeat Simple_repeat 1 104 0 7 1587 450 0 0 0 chr1 131433230 131433280 -65762152 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1587 202 209 14 29 chr1 131433506 131433575 -65761857 + (CATA)n Simple_repeat Simple_repeat 3 70 0 7 1587 650 229 31 103 chr1 131433818 131434013 -65761419 + B3A SINE B2 2 182 -16 7 1587 528 148 0 0 chr1 131434035 131434157 -65761275 + (TC)n Simple_repeat Simple_repeat 2 123 0 7 1587 288 0 0 0 chr1 131434157 131434189 -65761243 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1587 21 0 0 0 chr1 131434927 131434948 -65760484 + AT_rich Low_complexity Low_complexity 1 21 0 7 1587 23 0 0 0 chr1 131435307 131435330 -65760102 + AT_rich Low_complexity Low_complexity 1 23 0 7 1587 3112 66 9 0 chr1 131436052 131436474 -65758958 - L1_Mus1 LINE L1 -298 6269 5844 7 1587 980 276 101 21 chr1 131436497 131436823 -65758609 - ORR1E LTR MaLR -2 357 6 7 1587 216 0 0 0 chr1 131437364 131437388 -65758044 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 7 1587 599 312 109 62 chr1 131438258 131438964 -65756468 - LTR48 LTR ERV1 -4 783 3 7 1587 645 325 16 53 chr1 131439920 131440167 -65755265 + B4A SINE B4 46 283 -9 7 1587 654 99 61 8 chr1 131440236 131440368 -65755064 + Lx LINE L1 6514 6652 -2 7 1587 280 36 0 35 chr1 131440399 131440456 -65754976 + L1Md_F2 LINE L1 6528 6582 0 7 1587 1118 251 36 120 chr1 131440907 131441300 -65754132 + MTE2a LTR MaLR 19 378 -1 7 1587 455 48 16 0 chr1 131441411 131441473 -65753959 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 1587 306 227 0 0 chr1 131442298 131442373 -65753059 + (TA)n Simple_repeat Simple_repeat 2 76 0 7 1587 677 313 35 4 chr1 131442421 131442649 -65752783 - MER2 DNA MER2_type -4 341 107 7 1587 356 321 7 7 chr1 131442717 131442852 -65752580 + Lx8 LINE L1 7202 7336 -137 7 1587 477 0 0 0 chr1 131443552 131443605 -65751827 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1587 528 16 0 0 chr1 131443798 131443859 -65751573 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1587 366 23 0 0 chr1 131443860 131443903 -65751529 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1587 1113 56 0 27 chr1 131443997 131444145 -65751287 + B1_Mm SINE Alu 4 147 0 7 1587 216 158 0 0 chr1 131444145 131444183 -65751249 + A-rich Low_complexity Low_complexity 138 175 0 7 1587 595 0 0 26 chr1 131444183 131444260 -65751172 + (GAAAA)n Simple_repeat Simple_repeat 5 79 0 7 1587 21 0 0 0 chr1 131445050 131445071 -65750361 + AT_rich Low_complexity Low_complexity 1 21 0 7 1587 894 314 30 11 chr1 131445299 131445566 -65749866 - B4A SINE B4 -10 282 11 7 1587 189 0 0 0 chr1 131445624 131445645 -65749787 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1587 225 309 36 36 chr1 131445796 131445880 -65749552 + RSINE1 SINE B4 72 155 -10 8 1587 26 50 0 0 chr1 131445880 131445920 -65749512 + AT_rich Low_complexity Low_complexity 1 40 0 8 1587 519 69 0 0 chr1 131447853 131447925 -65747507 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1587 563 320 104 24 chr1 131447955 131448295 -65747137 + MTD LTR MaLR 39 403 -16 8 1587 290 298 53 84 chr1 131448666 131448893 -65746539 - L2a LINE L2 0 3426 3207 8 1587 2095 134 43 285 chr1 131449513 131450424 -65745008 + RMER6C LTR ERVK 1 690 0 8 1587 432 86 0 0 chr1 131450514 131450584 -65744848 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1587 1041 293 60 22 chr1 131450654 131451108 -65744324 - Lx8 LINE L1 -163 7310 6840 8 1587 935 328 13 50 chr1 131451422 131451724 -65743708 - B4A SINE B4 0 292 2 8 1587 341 117 17 0 chr1 131451963 131452023 -65743409 + (CAA)n Simple_repeat Simple_repeat 2 62 0 8 1587 1110 264 117 53 chr1 131452511 131452887 -65742545 - MTD LTR MaLR -15 404 5 8 1587 256 178 22 22 chr1 131455266 131455312 -65740120 + B4A SINE B4 1 46 -246 8 1587 212 287 115 29 chr1 131456032 131456136 -65739296 - MIRb SINE MIR -31 237 125 8 1587 426 20 0 0 chr1 131457124 131457175 -65738257 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1587 611 169 6 33 chr1 131457183 131457366 -65738066 + (TA)n Simple_repeat Simple_repeat 2 179 0 8 1587 1048 321 110 62 chr1 131457773 131458709 -65736723 - Charlie1 DNA MER1_type -1671 1110 130 8 1587 310 281 9 19 chr1 131460922 131461027 -65734405 + Charlie5 DNA MER1_type 22 125 -2499 8 1587 472 306 14 20 chr1 131461155 131461302 -65734130 + RSINE1 SINE B4 3 148 -17 8 1587 711 322 45 20 chr1 131461509 131461908 -65733524 - L1MD2 LINE L1 -498 5861 5453 8 1587 308 346 15 0 chr1 131461915 131462048 -65733384 + Charlie5 DNA MER1_type 2292 2426 -198 8 1587 373 345 76 33 chr1 131462261 131462471 -65732961 - MER58A DNA MER1_type -5 219 1 8 1587 1580 241 20 77 chr1 131462610 131463011 -65732421 - MTEa LTR MaLR -1 378 1 8 1587 278 366 75 40 chr1 131463011 131463227 -65732205 - LTR33A_ LTR ERVL -98 433 208 8 1587 669 260 40 10 chr1 131463824 131464026 -65731406 - ID_B1 SINE B4 -15 209 2 8 1588 625 328 56 16 chr1 131465738 131465989 -65729443 - MLT1H LTR MaLR -193 356 96 8 1588 22 35 0 0 chr1 131466217 131466246 -65729186 + AT_rich Low_complexity Low_complexity 1 29 0 8 1588 3064 84 2 5 chr1 131468184 131468603 -65726829 - L1_Mus2 LINE L1 0 6566 6149 8 1588 3554 94 1 24 chr1 131468612 131469374 -65726058 + L1_Mus2 LINE L1 5414 6141 -497 8 1588 267 298 8 16 chr1 131469519 131469645 -65725787 + (CATATA)n Simple_repeat Simple_repeat 3 127 0 8 1588 408 40 0 0 chr1 131469845 131469895 -65725537 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1588 399 336 31 15 chr1 131471185 131471315 -65724117 + RSINE1 SINE B4 34 165 0 8 1588 242 56 0 27 chr1 131471418 131471455 -65723977 + (TTA)n Simple_repeat Simple_repeat 2 37 0 8 1588 1351 252 84 30 chr1 131471455 131471859 -65723573 - Lx6 LINE L1 -35 7425 7000 8 1588 1073 50 0 7 chr1 131471859 131472000 -65723432 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 8 1588 7892 36 2 2 chr1 131472025 131473017 -65722415 - L1Md_F2 LINE L1 -3 6579 5588 8 1588 682 249 157 5 chr1 131473030 131473228 -65722204 - Lx6 LINE L1 -477 6983 6756 8 1588 2468 113 48 5 chr1 131473241 131473634 -65721798 + L1_Mus3 LINE L1 6229 6638 0 8 1588 539 269 108 1 chr1 131474178 131474357 -65721075 + B3A SINE B2 1 198 -18 8 1588 732 295 34 58 chr1 131476126 131476331 -65719101 + ID_B1 SINE B4 7 206 -18 8 1588 219 36 0 0 chr1 131476346 131476374 -65719058 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1588 628 324 58 13 chr1 131477132 131477357 -65718075 + B4A SINE B4 46 280 -12 8 1588 198 128 0 0 chr1 131477437 131477476 -65717956 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 8 1588 594 0 0 0 chr1 131477481 131477547 -65717885 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 1588 245 341 0 12 chr1 131478152 131478235 -65717197 - MamGypLTR1d LTR Gypsy 0 813 732 8 1588 391 299 135 64 chr1 131479314 131479655 -65715777 - MT2A LTR ERVL -2 599 1 8 1588 411 276 39 54 chr1 131479655 131479785 -65715647 - MTEa LTR MaLR -251 128 1 8 1588 277 175 18 0 chr1 131480378 131480435 -65714997 + Lx6 LINE L1 6395 6452 -1008 8 1588 4007 221 75 21 chr1 131480434 131481503 -65713929 + Lx7 LINE L1 6570 7696 0 8 1588 5201 33 5 0 chr1 131482259 131482918 -65712514 - L1Md_F3 LINE L1 0 6584 5919 8 1588 1137 82 0 0 chr1 131484201 131484348 -65711084 + B1_Mus2 SINE Alu 1 147 0 8 1588 249 57 0 0 chr1 131484354 131484389 -65711043 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1588 464 327 0 75 chr1 131485195 131485354 -65710078 - RSINE1 SINE B4 -17 148 2 8 1588 547 224 148 19 chr1 131486624 131486940 -65708492 + Lx8 LINE L1 6969 7326 -147 8 1588 560 14 14 0 chr1 131486980 131487049 -65708383 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1588 3403 34 5 2 chr1 131489288 131489700 -65705732 - L1Md_F3 LINE L1 0 6584 6172 8 1588 477 33 0 0 chr1 131489700 131489760 -65705672 + L1Md_F3 LINE L1 6107 6166 -418 8 1588 912 246 44 2 chr1 131489899 131490131 -65705301 + B4 SINE B4 8 246 -46 8 1588 256 261 0 64 chr1 131490424 131490518 -65704914 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 8 1588 261 288 41 0 chr1 131490540 131490613 -65704819 + PB1 SINE Alu 41 116 -11 8 1588 600 14 0 0 chr1 131490734 131490803 -65704629 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1588 887 245 19 19 chr1 131491295 131491511 -65703921 - B3 SINE B2 0 216 1 8 1588 215 337 13 129 chr1 131492986 131493062 -65702370 - B3 SINE B2 -11 205 134 8 1588 531 0 0 0 chr1 131493062 131493121 -65702311 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1588 215 337 13 129 chr1 131493121 131493173 -65702259 - B3 SINE B2 -83 133 7 8 1588 511 200 0 10 chr1 131493173 131493269 -65702163 - RSINE1 SINE B4 -63 102 8 8 1588 1172 106 0 6 chr1 131494253 131494433 -65700999 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1588 307 276 27 27 chr1 131494749 131494898 -65700534 - L1MC2 LINE L1 -362 5982 5834 8 1588 268 296 161 86 chr1 131494919 131495093 -65700339 - B4A SINE B4 -3 289 103 8 1588 369 187 0 0 chr1 131495095 131495170 -65700262 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1588 363 291 94 18 chr1 131495238 131495462 -65699970 - L1MC2 LINE L1 -512 5821 5581 8 1588 241 211 18 0 chr1 131495712 131495769 -65699663 - L1M4 LINE L1 -594 5590 5533 8 1588 289 313 39 16 chr1 131496041 131496223 -65699209 - L1MCa LINE L1 -6254 254 69 8 1588 258 136 0 57 chr1 131496610 131496680 -65698752 + CT-rich Low_complexity Low_complexity 2 67 0 8 1588 295 242 15 0 chr1 131496869 131496935 -65698497 - RMER15 LTR ERVL -105 470 404 8 1588 563 305 45 10 chr1 131496936 131497138 -65698294 - Lx8 LINE L1 -207 7266 7058 8 1588 882 234 73 15 chr1 131497601 131497805 -65697627 - B3 SINE B2 0 216 1 8 1588 602 254 0 23 chr1 131498043 131498176 -65697256 + B1_Mus1 SINE Alu 1 130 -18 8 1588 402 85 0 0 chr1 131498296 131498355 -65697077 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1588 425 276 78 35 chr1 131499599 131499949 -65695483 - L1M2 LINE L1 -4284 2565 2222 8 1588 264 149 0 0 chr1 131500503 131500550 -65694882 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 1 1588 205 175 52 17 chr1 131500553 131500669 -65694763 + (CAGA)n Simple_repeat Simple_repeat 1 120 0 2 1588 258 235 0 0 chr1 131500658 131500739 -65694693 + GA-rich Low_complexity Low_complexity 2 82 0 3 1588 899 145 40 6 chr1 131501892 131502077 -65693355 - URR1A DNA MER1_type -6 220 1 4 1588 293 342 0 0 chr1 131503517 131503590 -65691842 + ID4_ SINE ID 8 80 -3 5 1588 250 359 113 0 chr1 131503590 131503623 -65691809 + ID_B1 SINE B4 8 125 -99 6 1588 576 0 0 0 chr1 131503626 131503690 -65691742 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1588 231 36 0 0 chr1 131503909 131503937 -65691495 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1588 401 154 0 11 chr1 131504170 131504262 -65691170 + (TAAA)n Simple_repeat Simple_repeat 2 92 0 9 1588 331 307 100 37 chr1 131504660 131504979 -65690453 - MLT1D LTR MaLR -81 386 46 1 1588 372 270 154 7 chr1 131505147 131505296 -65690136 - RMER5 LTR ERV1 0 534 364 1 1588 232 259 167 65 chr1 131505314 131505500 -65689932 - RMER5 LTR ERV1 -278 256 52 1 1588 22 56 0 0 chr1 131506718 131506754 -65688678 + AT_rich Low_complexity Low_complexity 1 36 0 1 1588 381 353 83 0 chr1 131506884 131507040 -65688392 - B4A SINE B4 -104 188 20 1 1588 367 335 42 23 chr1 131507174 131507388 -65688044 - MLT1B LTR MaLR -8 382 165 1 1588 402 176 0 0 chr1 131507391 131507476 -65687956 + CT-rich Low_complexity Low_complexity 2 86 0 1 1588 539 238 84 104 chr1 131508074 131508276 -65687156 - B3A SINE B2 0 198 1 1 1588 374 341 31 8 chr1 131508377 131508504 -65686928 - MER63B DNA AcHobo -4 432 303 1 1588 193 330 43 11 chr1 131508935 131509027 -65686405 + MIR SINE MIR 87 181 -81 1 1588 345 245 112 20 chr1 131509171 131509269 -65686163 - PB1 SINE Alu -5 115 10 1 1588 364 247 35 12 chr1 131509395 131509481 -65685951 + RSINE1 SINE B4 56 143 -22 2 1588 419 73 15 0 chr1 131509482 131509550 -65685882 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1588 306 0 0 0 chr1 131509550 131509583 -65685849 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1588 240 323 0 0 chr1 131510874 131510936 -65684496 - B3A SINE B2 -57 141 80 2 1588 768 226 15 81 chr1 131511139 131511336 -65684096 - B3A SINE B2 -14 184 1 2 1588 185 370 0 0 chr1 131511551 131511605 -65683827 + MIRm SINE MIR 73 126 -150 2 1588 2327 86 27 21 chr1 131511852 131512186 -65683246 - Lx3_Mus LINE L1 0 7009 6674 2 1588 180 0 0 0 chr1 131512623 131512643 -65682789 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1588 276 77 0 0 chr1 131512645 131512684 -65682748 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1588 191 348 85 18 chr1 131513192 131513356 -65682076 - L2a LINE L2 -5 3421 3247 2 1588 353 239 6 6 chr1 131515242 131515402 -65680030 + CT-rich Low_complexity Low_complexity 1 160 0 3 1588 229 300 0 0 chr1 131515405 131515465 -65679967 + L2a LINE L2 3364 3423 -3 3 1588 183 362 0 0 chr1 131515826 131515895 -65679537 + L2c LINE L2 3319 3387 0 3 1588 423 0 0 0 chr1 131516825 131516872 -65678560 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1588 4032 66 31 14 chr1 131517299 131517853 -65677579 - L1Md_F2 LINE L1 -1 6581 6019 3 1588 7489 62 0 0 chr1 131517853 131518807 -65676625 + L1_Mm LINE L1 4144 5097 -786 3 1588 912 227 0 57 chr1 131518807 131519017 -65676415 - B3A SINE B2 0 198 1 3 1588 919 191 88 50 chr1 131519721 131520040 -65675392 - RMER17C LTR ERVK 0 410 80 3 1588 2563 159 7 7 chr1 131520040 131520459 -65674973 + L1_Mur1 LINE L1 5416 5834 -52 3 1588 22 35 0 0 chr1 131521736 131521765 -65673667 + AT_rich Low_complexity Low_complexity 1 29 0 3 1588 3670 133 8 15 chr1 131521765 131522362 -65673070 + Lx2 LINE L1 6405 6997 0 4 1588 300 321 0 9 chr1 131522379 131522486 -65672946 - Lx8 LINE L1 -6 7467 7362 4 1588 1805 271 78 12 chr1 131522509 131523021 -65672411 - Lx8 LINE L1 -393 7080 6535 4 1588 564 152 0 0 chr1 131523067 131523166 -65672266 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1588 751 280 37 28 chr1 131523186 131523403 -65672029 - ID_B1 SINE B4 0 224 6 4 1588 396 0 0 0 chr1 131523456 131523500 -65671932 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1588 300 27 0 0 chr1 131523764 131523801 -65671631 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1588 349 326 12 0 chr1 131524232 131524318 -65671114 - B4A SINE B4 -2 290 204 4 1588 3438 288 107 27 chr1 131525722 131526992 -65668440 - Lx8 LINE L1 -2 7471 6100 4 1588 459 223 225 99 chr1 131527993 131528357 -65667075 + MTD LTR MaLR 6 415 -4 4 1588 285 89 29 15 chr1 131528984 131529052 -65666380 + (TTTTG)n Simple_repeat Simple_repeat 1 69 0 4 1588 1139 70 0 0 chr1 131529074 131529217 -65666215 - B1_Mm SINE Alu -2 145 3 5 1588 23 0 0 0 chr1 131529427 131529450 -65665982 + AT_rich Low_complexity Low_complexity 1 23 0 5 1588 258 32 0 0 chr1 131529452 131529483 -65665949 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 5 1588 387 240 159 8 chr1 131529497 131529623 -65665809 - RSINE1 SINE B4 -19 146 2 5 1588 452 18 18 0 chr1 131530468 131530525 -65664907 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1588 206 146 62 0 chr1 131530558 131530606 -65664826 + (ATTG)n Simple_repeat Simple_repeat 4 54 0 5 1588 445 250 123 16 chr1 131532406 131532593 -65662839 - L1MA8 LINE L1 -34 6257 6051 5 1588 200 321 12 12 chr1 131533332 131533417 -65662015 + MIRc SINE MIR 74 158 -110 5 1588 211 196 59 0 chr1 131533779 131533830 -65661602 + MIRm SINE MIR 124 177 -99 5 1588 566 337 51 30 chr1 131534337 131534670 -65660762 - LTR40b LTR ERVL 0 462 123 5 1588 638 130 0 44 chr1 131535797 131535910 -65659522 - B1_Mus1 SINE Alu -5 143 36 6 1588 261 0 0 0 chr1 131536384 131536413 -65659019 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1588 453 36 0 0 chr1 131537554 131537609 -65657823 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1588 355 362 39 0 chr1 131538793 131538920 -65656512 + B1F SINE Alu 1 132 -17 6 1588 541 305 13 32 chr1 131539058 131539214 -65656218 - ID_B1 SINE B4 -67 157 5 6 1588 931 165 6 6 chr1 131539679 131539856 -65655576 - Lx2B LINE L1 -11 6989 6813 6 1588 476 303 114 41 chr1 131540156 131540497 -65654935 - L1M5 LINE L1 -731 5713 5348 6 1588 289 228 161 11 chr1 131541110 131541203 -65654229 + L3 LINE CR1 2120 2226 -2263 6 1588 764 295 40 25 chr1 131541883 131542161 -65653271 + MER2 DNA MER2_type 64 345 0 6 1588 22 56 0 0 chr1 131542293 131542329 -65653103 + AT_rich Low_complexity Low_complexity 1 36 0 6 1588 371 365 95 47 chr1 131542652 131543011 -65652421 - L2a LINE L2 -22 3404 3029 7 1588 306 342 96 5 chr1 131543036 131543224 -65652208 + L1ME1 LINE L1 5919 6123 -56 7 1588 267 365 0 0 chr1 131543231 131543335 -65652097 + (CA)n Simple_repeat Simple_repeat 1 104 0 7 1588 203 308 7 0 chr1 131543355 131543498 -65651934 + (CA)n Simple_repeat Simple_repeat 1 144 0 7 1588 1458 236 117 28 chr1 131543626 131544167 -65651265 - L1M2 LINE L1 -1521 4622 4034 7 1588 522 328 29 6 chr1 131544196 131544371 -65651061 + B3A SINE B2 5 183 -15 7 1588 5427 250 85 31 chr1 131544389 131546518 -65648914 + Lx9 LINE L1 5328 7641 -3 7 1588 952 48 27 7 chr1 131546709 131546857 -65648575 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 7 1588 674 274 42 23 chr1 131547954 131548171 -65647261 - RLTR45 LTR ERVK -1 481 261 7 1588 942 106 0 0 chr1 131548541 131548682 -65646750 + (TCCC)n Simple_repeat Simple_repeat 1 141 0 7 1588 387 307 168 0 chr1 131548701 131548880 -65646552 - ID_B1 SINE B4 -14 210 2 7 1588 224 241 0 0 chr1 131549789 131549843 -65645589 + T-rich Low_complexity Low_complexity 1 54 0 8 1588 473 283 152 64 chr1 131549844 131550048 -65645384 - B4 SINE B4 -69 223 2 8 1588 10037 18 50 50 chr1 131550628 131551223 -65644209 + L1_Mm LINE L1 4273 4897 -986 8 1588 260 150 46 77 chr1 131551223 131551288 -65644144 - RMER20A LTR ERVK -268 248 186 8 1588 10037 18 50 50 chr1 131551288 131551942 -65643490 + L1_Mm LINE L1 4898 5586 -297 8 1588 8264 39 3 0 chr1 131551943 131552934 -65642498 + L1Md_T LINE L1 5588 6581 -1 8 1588 233 302 16 78 chr1 131553885 131554014 -65641418 + MER106A DNA MER1_type 108 228 -8 8 1588 227 381 103 23 chr1 131555511 131555774 -65639658 - Lx8 LINE L1 -123 7350 7067 8 1588 492 232 281 0 chr1 131556076 131556240 -65639192 + B3 SINE B2 1 210 -6 8 1588 620 292 14 0 chr1 131560699 131560846 -65634586 - MER70A LTR ERVL -12 460 312 8 1588 505 354 80 10 chr1 131560899 131561099 -65634333 - MER70A LTR ERVL -350 228 15 8 1588 267 310 0 0 chr1 131561157 131561228 -65634204 + MIR SINE MIR 13 83 -179 8 1588 317 280 177 33 chr1 131561262 131561443 -65633989 - B3 SINE B2 -1 215 9 9 1588 1655 122 32 7 chr1 131561854 131562135 -65633297 + Lx LINE L1 6367 6654 0 9 1588 827 295 8 0 chr1 131563079 131563316 -65632116 - Lx8 LINE L1 -907 6566 6328 9 1588 235 261 62 77 chr1 131563345 131563540 -65631892 - Lx7 LINE L1 -1510 6186 5995 9 1588 695 311 5 5 chr1 131564777 131564987 -65630445 + ID_B1 SINE B4 5 214 -10 9 1588 445 303 91 39 chr1 131565741 131566070 -65629362 + ORR1E LTR MaLR 20 379 0 9 1588 231 323 175 16 chr1 131566690 131566816 -65628616 - MLT1K LTR MaLR -298 297 152 9 1588 219 69 0 0 chr1 131567064 131567093 -65628339 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1588 3193 91 11 2 chr1 131567102 131567555 -65627877 - L1Md_F2 LINE L1 0 6582 6126 9 1588 584 319 63 109 chr1 131567751 131568226 -65627206 + MLT1C LTR MaLR 3 455 -12 9 1588 975 274 36 36 chr1 131568370 131568650 -65626782 + B4 SINE B4 9 288 -4 1 1588 180 0 0 0 chr1 131569781 131569801 -65625631 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1588 663 25 0 0 chr1 131570902 131570983 -65624449 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1588 908 252 68 19 chr1 131571021 131571284 -65624148 + B4 SINE B4 1 276 -16 1 1588 198 0 0 0 chr1 131571746 131571768 -65623664 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 1 1588 876 299 91 10 chr1 131573063 131573370 -65622062 - ORR1E LTR MaLR -1 358 27 1 1588 520 299 36 41 chr1 131573399 131573619 -65621813 + ID_B1 SINE B4 3 221 -3 1 1588 211 28 27 27 chr1 131574915 131574952 -65620480 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 1 1588 257 388 10 10 chr1 131576178 131576282 -65619150 + MER21B LTR ERV1 20 123 -740 1 1588 236 331 36 138 chr1 131576389 131576585 -65618847 + MER21B LTR ERV1 272 447 -416 1 1588 431 284 26 39 chr1 131576607 131576761 -65618671 + MER21B LTR ERV1 428 579 -284 1 1588 309 293 126 21 chr1 131576795 131576938 -65618494 + MER21B LTR ERV1 676 833 -30 1 1588 257 340 69 27 chr1 131578248 131578508 -65616924 - B4A SINE B4 -18 274 4 1 1588 607 112 19 0 chr1 131578530 131578637 -65616795 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1588 529 199 23 6 chr1 131578790 131578967 -65616465 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1588 261 0 0 0 chr1 131579554 131579583 -65615849 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1588 2542 121 98 0 chr1 131579878 131580298 -65615134 + Lx4A LINE L1 6520 6980 -78 1 1588 1748 98 15 19 chr1 131580378 131580637 -65614795 + RMER17B LTR ERVK 4 261 -697 1 1588 201 185 36 18 chr1 131580706 131580761 -65614671 + T-rich Low_complexity Low_complexity 2 57 0 1 1588 3929 37 8 8 chr1 131580763 131581249 -65614183 - L1Md_F3 LINE L1 -2 6582 6097 1 1588 321 239 57 35 chr1 131582055 131582172 -65613260 - B3A SINE B2 -10 206 80 1 1588 234 176 39 19 chr1 131583132 131583184 -65612248 + LTR16C LTR ERVL 77 129 -360 1 1588 228 273 0 18 chr1 131584166 131584222 -65611210 + MTEb LTR MaLR 39 93 -286 1 1588 224 196 57 38 chr1 131584234 131584287 -65611145 - L2c LINE L2 -58 3329 3276 1 1588 594 0 0 0 chr1 131584643 131584709 -65610723 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1588 254 363 69 12 chr1 131584975 131585148 -65610284 - MER5A DNA MER1_type -3 186 4 1 1588 472 278 75 20 chr1 131586755 131586838 -65608594 - MER44B DNA MER2_type -8 542 452 1 1588 213 121 0 0 chr1 131586838 131586871 -65608561 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1588 472 347 92 20 chr1 131586871 131587107 -65608325 - MER44B DNA MER2_type -99 451 158 1 1588 1618 170 144 18 chr1 131587104 131587445 -65607987 - ORR1B1 LTR MaLR -10 384 1 1 1588 280 250 0 0 chr1 131587462 131587522 -65607910 - MER44B DNA MER2_type -449 101 42 1 1588 21 0 0 0 chr1 131587940 131587961 -65607471 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 381 340 34 68 chr1 131589236 131589441 -65605991 - L2c LINE L2 -10 3377 3180 1 1588 751 210 145 0 chr1 131590237 131590423 -65605009 - B3 SINE B2 0 216 4 1 1588 316 238 229 37 chr1 131590453 131590641 -65604791 - RMER15 LTR ERVL -15 560 337 1 1588 623 354 36 16 chr1 131592360 131592610 -65602822 - MLT1A1 LTR MaLR -81 327 73 1 1588 281 117 0 16 chr1 131592960 131593021 -65602411 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 1 1588 567 0 0 0 chr1 131593244 131593307 -65602125 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 198 31586 85 19 8 chr1 131593476 131599637 -65595795 - L1Md_F2 LINE L1 -1 6581 346 1 1589 23 33 0 0 chr1 131600324 131600354 -65595078 + AT_rich Low_complexity Low_complexity 1 30 0 1 1589 25 31 0 0 chr1 131600414 131600446 -65594986 + AT_rich Low_complexity Low_complexity 1 32 0 1 1589 1261 272 88 22 chr1 131600604 131600978 -65594454 + MTD LTR MaLR 11 405 -14 1 1589 1290 108 0 5 chr1 131601468 131601654 -65593778 - B2_Mm2 SINE B2 -10 185 1 1 1589 203 148 85 12 chr1 131602914 131602996 -65592436 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1589 2953 263 52 52 chr1 131603278 131603721 -65591711 - RCHARR1 DNA MER1_type 0 974 517 1 1589 976 16 16 0 chr1 131603721 131603843 -65591589 + (TA)n Simple_repeat Simple_repeat 2 125 0 1 1589 2953 263 52 52 chr1 131603843 131604353 -65591079 - RCHARR1 DNA MER1_type -458 516 22 1 1589 260 261 29 44 chr1 131604576 131604712 -65590720 - L1M5 LINE L1 -296 5828 5695 1 1589 30 45 0 0 chr1 131604907 131604951 -65590481 + AT_rich Low_complexity Low_complexity 1 44 0 1 1589 314 123 0 17 chr1 131605621 131605679 -65589753 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1589 23 0 0 0 chr1 131605932 131605955 -65589477 + AT_rich Low_complexity Low_complexity 1 23 0 1 1589 562 279 117 23 chr1 131605969 131606226 -65589206 - B4 SINE B4 -10 282 2 1 1589 216 98 0 68 chr1 131606259 131606303 -65589129 + A-rich Low_complexity Low_complexity 4 44 0 1 1589 309 372 35 13 chr1 131607218 131607444 -65587988 - L1M5 LINE L1 -1543 4603 4373 1 1589 3795 101 20 16 chr1 131607643 131608285 -65587147 + L1_Mur2 LINE L1 2776 3420 -2457 1 1589 2325 165 18 2 chr1 131608291 131608685 -65586747 - Lx2 LINE L1 0 6997 6598 1 1589 877 337 78 9 chr1 131608697 131609044 -65586388 + Tigger7 DNA MER2_type 1 371 -2120 1 1589 211 318 56 92 chr1 131609009 131609133 -65586299 + RSINE1 SINE B4 29 152 -13 1 1589 407 52 17 0 chr1 131609133 131609191 -65586241 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1589 211 318 56 92 chr1 131609191 131609208 -65586224 + RSINE1 SINE B4 153 165 0 1 1589 34 0 0 0 chr1 131609225 131609259 -65586173 + AT_rich Low_complexity Low_complexity 1 34 0 1 1589 349 316 105 77 chr1 131609466 131609884 -65585548 + L1MC4a LINE L1 5569 5998 -1884 1 1589 283 300 9 18 chr1 131611319 131611431 -65584001 + (TATG)n Simple_repeat Simple_repeat 3 113 0 1 1589 183 42 0 0 chr1 131611956 131611980 -65583452 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1589 1252 74 0 6 chr1 131612140 131612317 -65583115 - L1Md_F2 LINE L1 0 6582 6407 1 1589 235 284 0 13 chr1 131612332 131612428 -65583004 + CT-rich Low_complexity Low_complexity 1 94 0 1 1589 180 0 0 0 chr1 131612430 131612450 -65582982 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1589 371 143 22 0 chr1 131612452 131612543 -65582889 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 1 1589 657 223 33 49 chr1 131612622 131612806 -65582626 - L1M2 LINE L1 -580 5711 5531 1 1589 4728 89 5 6 chr1 131613614 131614267 -65581165 + L1_Mus4 LINE L1 5966 6617 -19 1 1589 528 93 0 0 chr1 131614267 131614342 -65581090 + (TAA)n Simple_repeat Simple_repeat 3 77 0 1 1589 203 218 67 29 chr1 131614903 131615007 -65580425 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 1 1589 221 75 25 0 chr1 131615067 131615107 -65580325 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1589 3295 121 34 2 chr1 131615109 131615605 -65579827 - Lx LINE L1 -7 6647 6136 1 1589 217 163 20 0 chr1 131615697 131615746 -65579686 + A-rich Low_complexity Low_complexity 4 53 0 1 1589 240 323 0 16 chr1 131616055 131616118 -65579314 + PB1 SINE Alu 53 114 -13 1 1589 249 57 0 0 chr1 131616148 131616183 -65579249 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1589 336 315 35 43 chr1 131616297 131616413 -65579019 - RSINE1 SINE B4 -3 162 48 1 1589 435 180 20 20 chr1 131616593 131616746 -65578686 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1589 705 275 48 45 chr1 131617548 131617837 -65577595 - L1MA4 LINE L1 -379 5921 5632 1 1589 24 53 0 0 chr1 131618096 131618134 -65577298 + AT_rich Low_complexity Low_complexity 1 38 0 1 1589 1195 238 87 26 chr1 131618312 131618657 -65576775 - ORR1D2 LTR MaLR -4 366 1 1 1589 8152 36 3 5 chr1 131619825 131620804 -65574628 - L1Md_F2 LINE L1 -12 6570 5594 1 1589 1438 115 5 9 chr1 131620803 131621022 -65574410 + L1Md_F LINE L1 309 526 -5993 1 1589 340 228 48 7 chr1 131621452 131621598 -65573834 + Lx9 LINE L1 7493 7644 0 1 1589 21 0 0 0 chr1 131621843 131621864 -65573568 + AT_rich Low_complexity Low_complexity 1 21 0 1 1589 242 343 93 0 chr1 131622326 131622434 -65572998 - MIRb SINE MIR -136 132 15 1 1589 572 239 189 51 chr1 131623258 131623554 -65571878 - Lx4B LINE L1 -2 7056 6720 1 1589 374 162 0 56 chr1 131623554 131623626 -65571806 + U5 snRNA snRNA 7 74 -42 1 1589 887 314 55 68 chr1 131623726 131624106 -65571326 + MLT1B LTR MaLR 1 375 -15 1 1589 288 345 11 0 chr1 131624275 131624362 -65571070 + RSINE1 SINE B4 45 132 -33 1 1589 276 30 0 0 chr1 131624383 131624416 -65571016 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1589 1367 238 78 24 chr1 131625068 131625442 -65569990 + MTD LTR MaLR 12 405 -14 1 1589 238 368 0 0 chr1 131625616 131625684 -65569748 + ID4 SINE ID 16 83 0 1 1589 441 0 0 0 chr1 131625798 131625847 -65569585 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1589 2156 180 21 57 chr1 131625860 131626332 -65569100 - RLTR20B3 LTR ERVK -122 455 1 1 1589 351 0 0 0 chr1 131626336 131626375 -65569057 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1589 254 254 34 0 chr1 131626669 131626728 -65568704 + (CATA)n Simple_repeat Simple_repeat 3 63 0 1 1589 27 29 0 0 chr1 131626939 131626973 -65568459 + AT_rich Low_complexity Low_complexity 1 34 0 1 1589 1073 161 326 76 chr1 131627252 131627306 -65568126 + Lx6 LINE L1 3571 3624 -2256 1 1589 528 16 0 0 chr1 131627306 131627367 -65568065 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1589 324 0 0 0 chr1 131627367 131627402 -65568030 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1589 1073 161 326 76 chr1 131627402 131627702 -65567730 + Lx6 LINE L1 3625 4014 -1866 1 1589 720 164 164 0 chr1 131627694 131627846 -65567586 + Lx6 LINE L1 4442 4618 -1262 1 1589 1678 209 52 0 chr1 131627846 131628191 -65567241 + ORR1C1 LTR MaLR 14 376 -2 1 1589 1440 220 148 22 chr1 131628191 131628651 -65566781 + Lx6 LINE L1 4614 5131 -746 1 1589 2830 263 77 20 chr1 131628705 131629876 -65565556 + RMER1C Other Other 92 1341 -1 1 1589 4886 176 17 13 chr1 131629873 131630634 -65564798 + Lx6 LINE L1 5118 5883 -1577 1 1589 348 24 0 0 chr1 131630634 131630675 -65564757 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1589 4886 242 67 58 chr1 131630675 131632391 -65563041 + Lx6 LINE L1 5884 7695 -1 1 1589 248 383 0 12 chr1 131632442 131632524 -65562908 + ID4_ SINE ID 3 83 0 1 1589 29 0 0 0 chr1 131633505 131633534 -65561898 + AT_rich Low_complexity Low_complexity 1 29 0 1 1589 4457 66 5 3 chr1 131633538 131634130 -65561302 - L1Md_F2 LINE L1 0 6582 5990 2 1589 22 70 0 0 chr1 131634578 131634621 -65560811 + AT_rich Low_complexity Low_complexity 1 43 0 2 1589 369 0 0 0 chr1 131635160 131635201 -65560231 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1589 215 133 22 0 chr1 131635482 131635527 -65559905 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1589 2436 326 81 33 chr1 131635689 131636880 -65558552 + Lx8 LINE L1 6225 7472 -1 2 1589 3528 91 14 0 chr1 131639259 131639741 -65555691 + L1_Mus2 LINE L1 6078 6566 0 2 1589 222 297 109 11 chr1 131639968 131640060 -65555372 - MIRm SINE MIR -2 274 174 2 1589 781 90 148 0 chr1 131640100 131640222 -65555210 - B1_Mus1 SINE Alu -8 140 1 2 1589 408 267 45 45 chr1 131640330 131640487 -65554945 + CYRA11_Mm Unknown Y-chromosome 164 320 -297 2 1589 954 118 68 0 chr1 131640350 131640511 -65554921 - URR1A DNA MER1_type -8 218 47 2 1589 2646 67 3 0 chr1 131640518 131640849 -65554583 - L1_Mus1 LINE L1 -107 6460 6129 2 1589 27 29 0 0 chr1 131641224 131641258 -65554174 + AT_rich Low_complexity Low_complexity 1 34 0 2 1589 587 300 54 18 chr1 131641897 131642119 -65553313 + MTD LTR MaLR 32 261 -158 2 1589 230 316 133 0 chr1 131642749 131642847 -65552585 - MIR SINE MIR -128 134 24 2 1589 605 332 58 22 chr1 131643349 131643626 -65551806 + B4A SINE B4 2 288 -4 2 1589 369 0 0 0 chr1 131643690 131643731 -65551701 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1589 984 296 77 20 chr1 131643731 131644211 -65551221 + L1ME1 LINE L1 5171 5674 -505 2 1589 459 0 0 0 chr1 131644211 131644262 -65551170 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1589 984 314 82 25 chr1 131644262 131644554 -65550878 + L1ME1 LINE L1 5675 5987 -192 2 1589 383 162 12 0 chr1 131644577 131644657 -65550775 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1589 606 275 0 0 chr1 131645548 131645668 -65549764 + ID_B1 SINE B4 94 213 -11 2 1589 348 64 0 0 chr1 131645675 131645722 -65549710 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1589 31 0 0 0 chr1 131645762 131645793 -65549639 + AT_rich Low_complexity Low_complexity 1 31 0 2 1589 212 59 29 0 chr1 131645944 131645978 -65549454 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1589 494 288 20 0 chr1 131646108 131646254 -65549178 - B1F SINE Alu 0 149 1 2 1589 1992 126 0 25 chr1 131646932 131647258 -65548174 - Lx LINE L1 -4 6650 6333 2 1589 27 29 0 0 chr1 131647332 131647366 -65548066 + AT_rich Low_complexity Low_complexity 1 34 0 2 1589 540 0 0 0 chr1 131647404 131647464 -65547968 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1589 292 383 24 12 chr1 131647746 131647910 -65547522 + MIR SINE MIR 15 180 -82 2 1589 436 271 64 70 chr1 131647968 131648139 -65547293 - B3A SINE B2 -25 173 4 2 1589 288 0 0 0 chr1 131651204 131651236 -65544196 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1589 303 49 0 0 chr1 131651529 131651570 -65543862 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1589 2843 110 12 49 chr1 131651892 131652379 -65543053 + Lx LINE L1 6185 6653 -1 2 1589 441 0 0 0 chr1 131653773 131653822 -65541610 + (ATATG)n Simple_repeat Simple_repeat 2 50 0 2 1589 625 325 32 11 chr1 131657203 131657227 -65538205 - B3A SINE B2 -3 195 167 2 1589 336 48 0 0 chr1 131657227 131657269 -65538163 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1589 630 300 12 18 chr1 131657269 131657434 -65537998 - B3 SINE B2 -32 166 2 2 1589 811 306 106 28 chr1 131659674 131660062 -65535370 + MTD LTR MaLR 1 380 -39 2 1589 3538 70 19 4 chr1 131660315 131660792 -65534640 - L1Md_F2 LINE L1 -4 6578 6095 2 1589 21 0 0 0 chr1 131661545 131661566 -65533866 + AT_rich Low_complexity Low_complexity 1 21 0 2 1589 4134 71 2 25 chr1 131662683 131663244 -65532188 - L1_Mus2 LINE L1 0 6566 6019 2 1589 26 0 0 0 chr1 131664217 131664243 -65531189 + AT_rich Low_complexity Low_complexity 1 26 0 2 1589 33177 14 1 6 chr1 131664467 131670660 -65524772 - L1Md_A LINE L1 -1 6581 423 2 1589 538 319 123 32 chr1 131670663 131670939 -65524493 - MLT1A0 LTR MaLR -68 297 8 2 1589 873 310 29 16 chr1 131670939 131671313 -65524119 - MTEa LTR MaLR 0 379 1 2 1589 201 333 86 39 chr1 131672650 131672778 -65522654 + MIRc SINE MIR 11 144 -124 2 1589 270 0 0 0 chr1 131674997 131675027 -65520405 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1589 180 247 81 101 chr1 131675195 131675294 -65520138 + MIRm SINE MIR 53 149 -127 2 1589 251 299 78 16 chr1 131675510 131675639 -65519793 - MER5A1 DNA MER1_type -1 165 29 2 1589 225 375 0 9 chr1 131675892 131675997 -65519435 - MER5B DNA MER1_type -2 176 73 2 1589 222 211 167 50 chr1 131676771 131676805 -65518627 - B1F SINE Alu -81 68 25 2 1589 396 0 0 0 chr1 131676805 131676849 -65518583 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1589 222 211 167 50 chr1 131676849 131676874 -65518558 - B1F SINE Alu -125 24 2 2 1589 224 100 25 0 chr1 131677494 131677534 -65517898 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1589 2349 85 0 6 chr1 131677540 131677872 -65517560 + MusHAL1 LINE L1 1308 1637 -1075 2 1589 776 320 151 23 chr1 131677857 131678381 -65517051 - Lx8 LINE L1 -988 6485 5895 2 1589 259 265 221 29 chr1 131678428 131678568 -65516864 + MIR SINE MIR 96 262 0 2 1589 338 241 36 12 chr1 131678985 131679069 -65516363 + MTEb LTR MaLR 287 372 -7 2 1589 237 232 0 0 chr1 131679983 131680052 -65515380 + (TATG)n Simple_repeat Simple_repeat 2 70 0 2 1589 465 19 0 0 chr1 131680058 131680112 -65515320 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1589 342 80 0 0 chr1 131680607 131680657 -65514775 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1589 458 33 17 0 chr1 131680657 131680717 -65514715 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1589 834 296 75 9 chr1 131680956 131681184 -65514248 - B4 SINE B4 -4 288 46 2 1589 404 238 10 8 chr1 131681510 131681626 -65513806 - L1MA7 LINE L1 -22 6269 6160 2 1589 1042 145 6 0 chr1 131682564 131682730 -65512702 - Lx2B LINE L1 -367 6633 6467 2 1589 721 152 12 56 chr1 131682730 131682890 -65512542 + Lx2B LINE L1 6846 6998 -2 2 1589 1138 90 0 0 chr1 131682900 131683045 -65512387 + B1_Mm SINE Alu 1 145 -2 2 1589 392 217 0 19 chr1 131683045 131683153 -65512279 + GA-rich Low_complexity Low_complexity 1 106 0 2 1589 232 399 22 22 chr1 131683653 131683789 -65511643 - MER5B DNA MER1_type -42 136 1 2 1589 207 0 0 0 chr1 131684937 131684960 -65510472 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1589 463 381 22 58 chr1 131687186 131687409 -65508023 + Tigger5 DNA MER2_type 26 240 -2166 2 1589 246 333 21 0 chr1 131688625 131688718 -65506714 - MER45A DNA Tip100 -13 165 71 2 1589 1162 299 56 21 chr1 131689123 131689514 -65505918 + MTD LTR MaLR 6 399 -20 2 1589 999 190 91 64 chr1 131689866 131690131 -65505301 - RLTR25B LTR ERVK 0 1028 757 2 1589 814 167 12 18 chr1 131690921 131691086 -65504346 - RLTR25B LTR ERVK -256 772 609 2 1589 7949 41 8 9 chr1 131691088 131692551 -65502881 - L1Md_F2 LINE L1 -1 6581 5147 2 1589 189 0 0 0 chr1 131692570 131692591 -65502841 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1589 25 31 0 0 chr1 131692649 131692681 -65502751 + AT_rich Low_complexity Low_complexity 1 32 0 2 1589 1902 167 59 3 chr1 131694546 131694883 -65500549 - RLTR25B LTR ERVK -672 356 1 2 1589 278 26 26 0 chr1 131694978 131695017 -65500415 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1589 324 0 0 0 chr1 131695477 131695513 -65499919 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1589 906 10 0 0 chr1 131695513 131695615 -65499817 + (GA)n Simple_repeat Simple_repeat 1 103 0 2 1589 518 275 0 7 chr1 131696383 131696520 -65498912 - Lx5 LINE L1 -997 6053 5917 2 1589 2621 69 9 3 chr1 131696520 131696870 -65498562 - L1Md_F2 LINE L1 0 6582 6231 2 1589 6931 60 19 0 chr1 131696870 131697747 -65497685 + L1_Mm LINE L1 4885 5778 -105 2 1589 439 154 0 0 chr1 131697783 131697861 -65497571 - Lx5 LINE L1 -1190 5860 5783 2 1589 332 56 70 0 chr1 131697861 131697932 -65497500 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 2 1589 3159 182 231 34 chr1 131698435 131699320 -65496112 - Lx5 LINE L1 -1253 5797 4739 2 1589 1100 332 43 10 chr1 131699320 131699719 -65495713 + Lx5 LINE L1 6639 7050 0 2 1589 254 123 18 0 chr1 131699751 131699808 -65495624 + (CATA)n Simple_repeat Simple_repeat 2 59 0 2 1589 3948 73 17 0 chr1 131700987 131701703 -65493729 - L1_Mus2 LINE L1 -444 6122 5395 2 1589 3545 49 0 54 chr1 131701704 131702182 -65493250 + L1_Mus2 LINE L1 6115 6566 0 2 1589 272 321 45 18 chr1 131702341 131702452 -65492980 - MER5B DNA MER1_type -62 116 3 2 1589 832 249 77 74 chr1 131702570 131702869 -65492563 + Lx6 LINE L1 7135 7434 -26 2 1589 501 258 27 49 chr1 131703111 131703315 -65492117 - MIRc SINE MIR -32 236 38 2 1589 537 16 0 0 chr1 131704561 131704623 -65490809 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1589 251 197 33 0 chr1 131704623 131704684 -65490748 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 2 1589 1695 144 112 31 chr1 131705114 131705436 -65489996 - ORR1B1 LTR MaLR -8 386 39 2 1589 196 252 53 164 chr1 131706607 131706759 -65488673 + MIR SINE MIR 85 219 -43 2 1589 6945 204 30 19 chr1 131707631 131707717 -65487715 - Lx5 LINE L1 -47 7003 6918 2 1589 581 0 14 0 chr1 131707717 131707786 -65487646 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1589 6945 200 120 56 chr1 131707786 131709258 -65486174 - Lx5 LINE L1 -133 6917 5495 2 1589 232 298 71 53 chr1 131709258 131709428 -65486004 - RLTR18B LTR ERVK -112 400 228 2 1589 6945 200 120 56 chr1 131709428 131709487 -65485945 - Lx5 LINE L1 -133 5494 5437 2 1589 5917 13 0 1 chr1 131709487 131710161 -65485271 - L1Md_A LINE L1 0 6582 5910 2 1589 5826 163 99 45 chr1 131710161 131711785 -65483647 - Lx5 LINE L1 -450 5436 3250 2 1589 1048 203 15 40 chr1 131711780 131712052 -65483380 - Lx5 LINE L1 -5954 1132 868 2 1589 934 196 54 0 chr1 131712752 131712956 -65482476 + B3 SINE B2 1 215 -1 2 1589 366 129 0 0 chr1 131713653 131713715 -65481717 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1589 243 270 0 0 chr1 131713735 131713922 -65481510 + (CA)n Simple_repeat Simple_repeat 1 187 0 2 1589 243 256 0 0 chr1 131713993 131714083 -65481349 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1589 471 229 27 45 chr1 131714200 131714310 -65481122 + PB1D10 SINE Alu 1 108 -9 2 1589 339 25 0 0 chr1 131715312 131715352 -65480080 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1589 1228 47 0 0 chr1 131716321 131716469 -65478963 + B1_Mus1 SINE Alu 1 148 0 2 1589 257 73 28 56 chr1 131716528 131716600 -65478832 + A-rich Low_complexity Low_complexity 2 71 0 2 1589 270 231 0 0 chr1 131717210 131717275 -65478157 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1589 508 335 55 22 chr1 131717283 131717594 -65477838 - Lx9 LINE L1 -127 7517 7197 3 1589 2031 119 3 6 chr1 131717749 131718061 -65477371 - L1_Mus4 LINE L1 -7 6629 6319 3 1589 3133 93 36 22 chr1 131718061 131718698 -65476734 - L1_Mus4 LINE L1 -587 6049 5406 3 1589 951 317 26 35 chr1 131718697 131719040 -65476392 - Lx9 LINE L1 -487 7157 6818 3 1589 21 0 0 0 chr1 131719469 131719490 -65475942 + AT_rich Low_complexity Low_complexity 1 21 0 3 1589 32 81 0 0 chr1 131720138 131720212 -65475220 + AT_rich Low_complexity Low_complexity 1 74 0 3 1589 1313 160 19 5 chr1 131721230 131721443 -65473989 + URR1A DNA MER1_type 2 217 -9 3 1589 663 13 0 0 chr1 131721824 131721900 -65473532 + (GAAA)n Simple_repeat Simple_repeat 3 78 0 3 1589 651 117 71 28 chr1 131722604 131722745 -65472687 + Lx LINE L1 6502 6648 -6 3 1589 252 280 48 63 chr1 131723639 131723765 -65471667 - ORR1E LTR MaLR -208 151 28 3 1589 315 368 18 0 chr1 131724867 131724981 -65470451 + PB1D10 SINE Alu 1 116 -1 3 1589 899 231 14 5 chr1 131725125 131725338 -65470094 - B3 SINE B2 0 216 2 3 1589 23 0 0 0 chr1 131725679 131725702 -65469730 + AT_rich Low_complexity Low_complexity 1 23 0 3 1589 23 86 0 0 chr1 131726973 131727031 -65468401 + AT_rich Low_complexity Low_complexity 1 58 0 3 1590 677 196 23 0 chr1 131727513 131727646 -65467786 + B1_Mus2 SINE Alu 3 138 -9 3 1590 333 0 0 0 chr1 131727646 131727683 -65467749 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1590 232 65 21 42 chr1 131727688 131727736 -65467696 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 3 1590 246 32 0 0 chr1 131727810 131727841 -65467591 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1590 504 48 0 0 chr1 131728722 131728785 -65466647 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1590 23 33 0 0 chr1 131729967 131729997 -65465435 + AT_rich Low_complexity Low_complexity 1 30 0 3 1590 522 46 0 0 chr1 131730349 131730414 -65465018 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1590 334 326 55 28 chr1 131732245 131732390 -65463042 - B1F SINE Alu 0 149 1 3 1590 239 265 36 0 chr1 131733699 131733782 -65461650 + CT-rich Low_complexity Low_complexity 2 87 0 3 1590 459 0 0 0 chr1 131734151 131734202 -65461230 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1590 382 355 81 62 chr1 131734693 131735174 -65460258 - L2a LINE L2 0 3426 2937 3 1590 351 0 0 0 chr1 131735333 131735372 -65460060 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1590 181 327 181 15 chr1 131735565 131735770 -65459662 - L2a LINE L2 -1197 2222 1984 3 1590 189 0 0 0 chr1 131736026 131736047 -65459385 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1590 3550 13 0 10 chr1 131736051 131736451 -65458981 - MTA_Mm LTR MaLR 0 396 1 3 1590 9308 21 18 1 chr1 131736451 131737531 -65457901 - MTA_Mm-int LTR MaLR 0 1098 1 3 1590 3575 8 0 10 chr1 131737531 131737931 -65457501 - MTA_Mm LTR MaLR 0 396 1 3 1590 468 227 11 6 chr1 131738131 131738250 -65457182 + (CA)n Simple_repeat Simple_repeat 1 120 0 3 1590 2013 131 62 0 chr1 131738250 131738556 -65456876 - ORR1A2 LTR MaLR -2 325 1 3 1590 468 227 11 6 chr1 131738556 131738613 -65456819 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1590 357 247 0 28 chr1 131738586 131738765 -65456667 + (CATA)n Simple_repeat Simple_repeat 4 177 0 3 1590 265 289 102 37 chr1 131738796 131739040 -65456392 - RLTR21 LTR ERVK -266 1306 1047 3 1590 3550 75 8 70 chr1 131740295 131740827 -65454605 + L1_Mus2 LINE L1 6067 6565 -1 3 1590 530 76 0 25 chr1 131740837 131740918 -65454514 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 3 1590 233 187 0 6 chr1 131741049 131741103 -65454329 - PB1 SINE Alu -70 57 4 3 1590 578 162 51 14 chr1 131741207 131741345 -65454087 - RMER1C Other Other -1 1341 1199 3 1590 746 276 5 20 chr1 131741666 131741704 -65453728 - B3A SINE B2 0 198 161 3 1590 474 49 0 0 chr1 131741704 131741765 -65453667 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1590 746 276 5 20 chr1 131741765 131741922 -65453510 - B3A SINE B2 -38 160 6 3 1590 21 0 0 0 chr1 131742171 131742192 -65453240 + AT_rich Low_complexity Low_complexity 1 21 0 3 1590 796 248 34 39 chr1 131742740 131742946 -65452486 - B3 SINE B2 -6 210 6 3 1590 834 309 41 0 chr1 131744566 131744786 -65450646 + B4A SINE B4 4 232 -60 3 1590 377 341 24 24 chr1 131744781 131744907 -65450525 + RSINE1 SINE B4 8 133 -32 3 1590 191 81 0 51 chr1 131745010 131745049 -65450383 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1590 216 304 101 36 chr1 131745440 131745585 -65449847 + MIRb SINE MIR 52 212 -56 3 1590 214 381 31 10 chr1 131746099 131746197 -65449235 - MamSINE1 SINE tRNA -188 102 3 3 1590 836 224 41 141 chr1 131746245 131746656 -65448776 - ORR1D2 LTR MaLR 0 370 1 3 1590 192 362 19 9 chr1 131747293 131747399 -65448033 + MIRb SINE MIR 134 240 -28 3 1590 187 245 20 0 chr1 131747454 131747503 -65447929 - MIR SINE MIR -74 188 139 3 1590 290 26 26 0 chr1 131747504 131747543 -65447889 + (TATG)n Simple_repeat Simple_repeat 1 40 0 3 1590 206 350 86 12 chr1 131748457 131748538 -65446894 + MIRc SINE MIR 2 88 -180 3 1590 676 325 94 16 chr1 131749035 131749279 -65446153 - B4A SINE B4 -14 278 16 3 1590 194 309 47 23 chr1 131750683 131750769 -65444663 + MIRb SINE MIR 139 226 -42 3 1590 365 58 19 0 chr1 131751459 131751511 -65443921 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 3 1590 673 248 7 14 chr1 131751577 131751720 -65443712 - ID_B1 SINE B4 0 224 83 3 1590 722 284 89 5 chr1 131752886 131753088 -65442344 + MTE2b LTR MaLR 2 220 -159 3 1590 804 58 32 78 chr1 131753089 131753462 -65441970 + (TCTCTG)n Simple_repeat Simple_repeat 1 356 0 3 1590 718 226 40 53 chr1 131753463 131753689 -65441743 + MTEb LTR MaLR 158 379 0 3 1590 469 298 86 43 chr1 131754433 131754619 -65440813 + B4A SINE B4 95 288 -4 3 1590 333 68 0 0 chr1 131754686 131754730 -65440702 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1590 353 252 157 73 chr1 131754830 131755143 -65440289 + L1Md_F LINE L1 299 725 -5794 3 1590 7293 63 0 20 chr1 131755149 131756339 -65439093 + L1_Mus2 LINE L1 5395 6560 -6 3 1590 219 319 134 52 chr1 131757071 131757356 -65438076 + L2c LINE L2 2772 3077 -310 3 1590 610 251 326 35 chr1 131757640 131757925 -65437507 - ORR1D2 LTR MaLR -2 368 1 3 1590 270 0 0 0 chr1 131757940 131757970 -65437462 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1590 898 285 118 35 chr1 131758306 131758644 -65436788 - MTEa LTR MaLR -12 367 2 3 1590 258 32 0 0 chr1 131760221 131760252 -65435180 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1590 232 292 32 77 chr1 131762659 131762815 -65432617 - L1MC4a LINE L1 -112 7770 7622 3 1590 1062 217 73 16 chr1 131763503 131763751 -65431681 + RLTR11A2 LTR ERVK 1 262 -265 3 1590 1405 211 40 40 chr1 131763814 131763879 -65431553 + RLTR11A2 LTR ERVK 174 238 -289 3 1590 360 0 0 0 chr1 131763879 131763919 -65431513 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 1590 1405 211 40 40 chr1 131763919 131764204 -65431228 + RLTR11A2 LTR ERVK 239 524 -3 3 1590 390 220 0 0 chr1 131765045 131765145 -65430287 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 1590 503 131 28 0 chr1 131765827 131765934 -65429498 + (ATGGTG)n Simple_repeat Simple_repeat 1 110 0 3 1590 238 329 13 27 chr1 131765934 131766009 -65429423 - ID4_ SINE ID -5 78 5 3 1590 3865 53 0 8 chr1 131766685 131767163 -65428269 - L1Md_F2 LINE L1 -12 6570 6097 3 1590 3850 104 12 4 chr1 131767194 131767752 -65427680 + Lx LINE L1 6085 6647 -7 3 1590 272 353 0 19 chr1 131768664 131768768 -65426664 + GA-rich Low_complexity Low_complexity 1 102 0 3 1590 278 282 22 44 chr1 131769161 131769298 -65426134 - L1MB2 LINE L1 -4 6167 6034 3 1590 242 278 8 107 chr1 131769298 131769419 -65426013 - LTR85a LTR Gypsy? -221 481 373 3 1590 243 303 0 39 chr1 131769419 131769522 -65425910 - L1MB2 LINE L1 -299 5872 5774 3 1590 189 147 0 0 chr1 131769653 131769687 -65425745 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1590 342 0 0 0 chr1 131770852 131770890 -65424542 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1590 182 224 122 0 chr1 131772400 131772449 -65422983 + L4 LINE RTE 216 270 -1759 3 1590 396 125 0 0 chr1 131772599 131772663 -65422769 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1590 191 307 152 35 chr1 131773445 131773590 -65421842 - L2 LINE L2 -975 2444 2283 3 1590 24 32 0 0 chr1 131774462 131774493 -65420939 + AT_rich Low_complexity Low_complexity 1 31 0 3 1590 1052 276 14 64 chr1 131774774 131775057 -65420375 + B4A SINE B4 1 269 -23 3 1590 294 29 0 0 chr1 131775057 131775092 -65420340 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1590 279 339 0 53 chr1 131775172 131775362 -65420070 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1590 420 274 75 33 chr1 131776264 131776462 -65418970 + MIR SINE MIR 12 224 -44 3 1590 202 217 14 14 chr1 131776529 131776599 -65418833 + CT-rich Low_complexity Low_complexity 4 73 0 3 1590 245 283 80 62 chr1 131776622 131776735 -65418697 - PB1D10 SINE Alu -1 116 2 3 1590 1385 271 60 91 chr1 131777033 131777581 -65417851 - MT2A LTR ERVL 0 533 3 3 1590 260 298 172 8 chr1 131777835 131777957 -65417475 + MLT1H2 LTR MaLR 45 186 -303 3 1590 22 0 0 0 chr1 131779272 131779294 -65416138 + AT_rich Low_complexity Low_complexity 1 22 0 3 1590 22 0 0 0 chr1 131780564 131780586 -65414846 + AT_rich Low_complexity Low_complexity 1 22 0 3 1590 23 33 0 0 chr1 131781180 131781210 -65414222 + AT_rich Low_complexity Low_complexity 1 30 0 3 1590 22 0 0 0 chr1 131781221 131781243 -65414189 + AT_rich Low_complexity Low_complexity 1 22 0 3 1590 736 286 123 31 chr1 131781261 131781586 -65413846 - ORR1E LTR MaLR -4 355 1 3 1590 183 262 92 35 chr1 131782173 131782260 -65413172 - MIR3 SINE MIR -102 106 15 3 1590 254 33 133 0 chr1 131782260 131782320 -65413112 + (TCTCTG)n Simple_repeat Simple_repeat 5 72 0 3 1590 540 303 100 88 chr1 131782644 131782995 -65412437 - MLT1A LTR MaLR -19 355 1 3 1590 512 198 18 69 chr1 131783587 131783804 -65411628 + RMER17C LTR ERVK 70 275 -135 4 1590 381 93 0 0 chr1 131783812 131783866 -65411566 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1590 316 38 57 19 chr1 131783866 131783919 -65411513 + (GGGGA)n Simple_repeat Simple_repeat 5 59 0 4 1590 1040 118 18 0 chr1 131783921 131784091 -65411341 + (GGAAA)n Simple_repeat Simple_repeat 5 177 0 4 1590 210 219 0 24 chr1 131786976 131787018 -65408414 + RSINE1 SINE B4 4 44 -121 4 1590 432 0 0 0 chr1 131787043 131787091 -65408341 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1590 210 229 0 0 chr1 131787094 131787142 -65408290 + (CAG)n Simple_repeat Simple_repeat 1 48 0 4 1590 899 304 58 8 chr1 131787241 131787483 -65407949 - B4A SINE B4 -35 257 4 4 1590 387 275 56 0 chr1 131788977 131789119 -65406313 + L1MA4 LINE L1 6082 6231 -69 4 1590 277 312 101 14 chr1 131790577 131790714 -65404718 + PB1D10 SINE Alu 3 149 0 4 1590 350 287 152 6 chr1 131790869 131791027 -65404405 - B3A SINE B2 -16 182 2 4 1590 329 0 0 24 chr1 131791248 131791290 -65404142 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1590 1145 81 0 0 chr1 131791290 131791438 -65403994 - B1_Mus1 SINE Alu 0 148 1 4 1590 302 45 0 22 chr1 131791441 131791486 -65403946 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1590 1428 116 0 5 chr1 131791491 131791708 -65403724 - Lx2 LINE L1 -7 6990 6775 4 1590 2748 96 2 2 chr1 131791708 131792103 -65403329 - Lx2 LINE L1 -354 6643 6249 4 1590 2542 98 5 3 chr1 131792100 131792489 -65402943 + L1_Mm LINE L1 5139 5528 -355 4 1590 317 254 28 69 chr1 131792489 131792633 -65402799 - L1MB7 LINE L1 -44 6140 6003 4 1590 3030 160 51 9 chr1 131792655 131793180 -65402252 - Lx4A LINE L1 -11 7047 6501 4 1590 3651 113 11 0 chr1 131793180 131793745 -65401687 + L1_Mur2 LINE L1 4894 5464 -413 4 1590 38 51 0 0 chr1 131793799 131793858 -65401574 + AT_rich Low_complexity Low_complexity 1 59 0 4 1590 962 245 25 0 chr1 131793860 131794064 -65401368 - B3 SINE B2 -7 209 1 4 1590 495 324 102 26 chr1 131796085 131796554 -65398878 + MLT1D LTR MaLR 1 505 0 4 1590 492 18 0 0 chr1 131796685 131796742 -65398690 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1590 924 165 102 21 chr1 131796951 131797137 -65398295 + ORR1A4 LTR MaLR 129 329 0 4 1590 239 157 20 0 chr1 131798537 131798588 -65396844 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 4 1590 189 0 0 0 chr1 131798635 131798656 -65396776 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1590 282 56 0 0 chr1 131798656 131798692 -65396740 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1590 520 94 46 30 chr1 131798689 131798820 -65396612 + (TCTCTG)n Simple_repeat Simple_repeat 2 134 0 4 1590 372 22 0 0 chr1 131798821 131798866 -65396566 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1590 2350 67 0 0 chr1 131800035 131800333 -65395099 - L1_Mus1 LINE L1 0 6567 6270 4 1590 186 82 39 39 chr1 131800338 131800389 -65395043 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1590 360 88 0 0 chr1 131800958 131801015 -65394417 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1590 548 95 12 0 chr1 131801307 131801391 -65394041 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1590 189 229 0 0 chr1 131801510 131801558 -65393874 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1590 487 314 112 0 chr1 131801606 131801794 -65393638 - Lx8 LINE L1 -151 7322 7114 4 1590 920 77 0 8 chr1 131801852 131801983 -65393449 + (GAA)n Simple_repeat Simple_repeat 1 130 0 4 1590 3872 131 19 0 chr1 131802053 131802695 -65392737 - Lx2 LINE L1 -531 6466 5813 4 1590 3435 108 22 0 chr1 131802695 131803193 -65392239 + Lx2 LINE L1 6485 6993 -4 4 1590 21 0 0 0 chr1 131803547 131803568 -65391864 + AT_rich Low_complexity Low_complexity 1 21 0 4 1590 1519 277 19 70 chr1 131804209 131805040 -65390392 + Lx7 LINE L1 3311 4099 -1781 4 1590 1449 189 102 10 chr1 131805049 131805354 -65390078 - MTD LTR MaLR -52 367 35 4 1590 687 278 30 28 chr1 131805361 131805723 -65389709 + Lx7 LINE L1 4085 4447 -1433 4 1590 362 296 146 61 chr1 131805739 131806117 -65389315 + Lx7 LINE L1 4859 5284 -596 4 1590 757 267 28 32 chr1 131806117 131806334 -65389098 + B3 SINE B2 1 216 0 4 1590 274 295 149 61 chr1 131806334 131806464 -65388968 + Lx7 LINE L1 5285 5436 -444 4 1590 931 231 44 12 chr1 131806491 131806741 -65388691 - L1_Mur3 LINE L1 -984 4896 4639 4 1590 360 0 0 0 chr1 131806746 131806786 -65388646 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1590 180 0 0 0 chr1 131806787 131806807 -65388625 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1590 1184 229 8 42 chr1 131806807 131807190 -65388242 - L1_Mur3 LINE L1 -2797 3083 2714 4 1590 2454 275 73 101 chr1 131807199 131807473 -65387959 + Lx7 LINE L1 5963 6237 -1459 4 1590 645 25 0 0 chr1 131807473 131807552 -65387880 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 1590 2454 275 73 101 chr1 131807552 131808237 -65387195 + Lx7 LINE L1 6238 6838 -858 4 1590 207 0 0 0 chr1 131808237 131808260 -65387172 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1590 2454 275 73 101 chr1 131808260 131808676 -65386756 + Lx7 LINE L1 6839 7301 -395 4 1590 21 36 0 0 chr1 131808923 131808951 -65386481 + AT_rich Low_complexity Low_complexity 1 28 0 4 1590 692 302 30 7 chr1 131808953 131809250 -65386182 + L1M2 LINE L1 5476 5779 -521 4 1590 492 315 74 58 chr1 131809255 131809377 -65386055 + Lx9 LINE L1 6969 7072 -572 4 1590 1459 196 112 20 chr1 131809377 131809558 -65385874 - ORR1C2 LTR MaLR -2 382 193 4 1590 378 0 0 0 chr1 131809558 131809600 -65385832 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1590 1459 196 112 20 chr1 131809600 131809766 -65385666 - ORR1C2 LTR MaLR -192 192 4 4 1590 492 315 74 58 chr1 131809766 131810105 -65385327 + Lx9 LINE L1 7073 7437 -207 4 1590 285 109 0 0 chr1 131810121 131810167 -65385265 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1590 243 0 0 0 chr1 131810765 131810792 -65384640 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1590 429 323 18 53 chr1 131811132 131811302 -65384130 + MER20 DNA MER1_type 51 214 -5 4 1590 214 368 0 0 chr1 131812447 131812515 -65382917 + L2a LINE L2 3357 3424 -2 4 1590 2254 172 22 92 chr1 131813113 131813656 -65381776 - RLTR16 LTR ERVK 0 505 1 4 1590 33 43 0 0 chr1 131817606 131817653 -65377779 + AT_rich Low_complexity Low_complexity 1 47 0 4 1590 3604 54 0 2 chr1 131818577 131819024 -65376408 + L1Md_F2 LINE L1 6125 6570 -12 4 1590 665 55 0 11 chr1 131819769 131819860 -65375572 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 1590 238 274 0 0 chr1 131819886 131819937 -65375495 - AmnSINE1 SINE SINE -488 87 37 4 1590 863 292 87 41 chr1 131820967 131821001 -65374431 - MTE-int LTR MaLR -28 1552 1520 4 1590 701 271 76 94 chr1 131821001 131821384 -65374048 - MTEb LTR MaLR 0 379 4 4 1590 863 292 87 41 chr1 131821384 131821717 -65373715 - MTE-int LTR MaLR -61 1519 1168 4 1590 328 211 13 26 chr1 131822215 131822293 -65373139 + B4 SINE B4 1 77 -215 4 1590 22 56 0 0 chr1 131822438 131822474 -65372958 + AT_rich Low_complexity Low_complexity 1 36 0 4 1590 427 309 171 35 chr1 131822501 131822876 -65372556 + L1M3 LINE L1 3878 4303 -1840 4 1590 398 254 48 52 chr1 131822919 131823168 -65372264 + Lx9 LINE L1 5999 6246 -1398 4 1590 411 98 0 0 chr1 131823223 131823284 -65372148 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1590 4192 242 61 17 chr1 131823437 131824658 -65370774 + Lx9 LINE L1 6353 7627 -17 4 1590 390 162 42 8 chr1 131824659 131824777 -65370655 + (TA)n Simple_repeat Simple_repeat 1 122 0 4 1590 1322 291 67 27 chr1 131824789 131825285 -65370147 + L1M3 LINE L1 4360 4860 -1280 4 1590 892 241 151 139 chr1 131825285 131825395 -65370037 - MT2A LTR ERVL 0 533 452 4 1590 624 62 0 0 chr1 131825395 131825476 -65369956 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 4 1590 892 241 151 139 chr1 131825476 131825890 -65369542 - MT2A LTR ERVL -82 451 3 4 1590 1322 291 67 27 chr1 131825890 131826135 -65369297 + L1M3 LINE L1 4861 5131 -1009 4 1590 256 152 74 33 chr1 131826561 131826683 -65368749 + (TA)n Simple_repeat Simple_repeat 2 128 0 4 1590 192 283 57 0 chr1 131828024 131828077 -65367355 - MIR SINE MIR -10 252 197 4 1590 860 314 50 43 chr1 131828465 131828861 -65366571 - L3 LINE CR1 -646 3843 3445 4 1590 1104 257 308 58 chr1 131829328 131830065 -65365367 + MTC-int LTR MaLR 27 960 -298 4 1590 369 0 0 0 chr1 131830065 131830106 -65365326 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 4 1590 1104 257 308 58 chr1 131830106 131830325 -65365107 + MTC-int LTR MaLR 961 1222 -36 4 1590 4911 123 71 7 chr1 131830355 131831196 -65364236 - Lx3B LINE L1 -34 6939 6045 4 1590 1195 243 168 17 chr1 131831218 131831570 -65363862 + MTD LTR MaLR 1 405 -14 4 1590 2551 181 66 20 chr1 131831989 131832532 -65362900 - RLTR12A LTR ERVK 0 568 1 4 1590 277 140 40 0 chr1 131833769 131833819 -65361613 - ORR1B1 LTR MaLR 0 394 343 4 1590 252 86 0 0 chr1 131833820 131833855 -65361577 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1590 530 291 0 109 chr1 131833856 131834057 -65361375 - Lx5 LINE L1 -20 7030 6852 4 1590 752 79 3 1 chr1 131834057 131834162 -65361270 + B1_Mm SINE Alu 42 145 -2 4 1590 1727 250 30 6 chr1 131834179 131834545 -65360887 - Lx5 LINE L1 -190 6860 6486 4 1590 1221 199 51 14 chr1 131834566 131834863 -65360569 - ORR1B1 LTR MaLR -42 352 1 4 1590 277 352 61 30 chr1 131835452 131835584 -65359848 - MIRc SINE MIR -86 182 47 4 1590 496 214 25 25 chr1 131837502 131837622 -65357810 - B1F SINE Alu -20 129 10 4 1590 234 222 19 0 chr1 131838038 131838092 -65357340 - Charlie8 DNA MER1_type -2283 145 91 4 1590 192 198 17 59 chr1 131838555 131838673 -65356759 + (TATG)n Simple_repeat Simple_repeat 2 114 0 4 1590 21 0 0 0 chr1 131839559 131839580 -65355852 + AT_rich Low_complexity Low_complexity 1 21 0 4 1590 682 308 106 45 chr1 131839782 131840160 -65355272 - MLT1I LTR MaLR -8 403 3 4 1590 940 278 161 3 chr1 131840995 131841331 -65354101 - Lx8 LINE L1 -1 7472 7084 4 1590 21 0 0 0 chr1 131841544 131841565 -65353867 + AT_rich Low_complexity Low_complexity 1 21 0 4 1590 1061 297 92 35 chr1 131841927 131842757 -65352675 - L1MA4 LINE L1 -359 5941 5037 4 1590 22 0 0 0 chr1 131843238 131843260 -65352172 + AT_rich Low_complexity Low_complexity 1 22 0 4 1590 294 327 25 19 chr1 131845018 131845177 -65350255 + GA-rich Low_complexity Low_complexity 6 165 0 4 1590 1296 92 36 42 chr1 131845336 131845529 -65349903 + B2_Mm2 SINE B2 3 194 -1 4 1590 1091 99 0 0 chr1 131846331 131846473 -65348959 + B1_Mus1 SINE Alu 1 142 -6 4 1590 508 29 29 0 chr1 131846474 131846544 -65348888 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1590 249 318 81 62 chr1 131846736 131846897 -65348535 - MLT1E1A LTR MaLR -24 600 437 4 1590 429 279 42 54 chr1 131846977 131847144 -65348288 - MLT1E1A LTR MaLR -410 270 106 4 1590 633 280 44 129 chr1 131850270 131850404 -65345028 - L1MA8 LINE L1 -282 6009 5896 4 1590 633 216 14 21 chr1 131850404 131850546 -65344886 - B1F SINE Alu -7 142 2 4 1590 663 276 41 43 chr1 131850546 131850827 -65344605 - L1MA8 LINE L1 -259 5909 5626 4 1590 339 290 19 0 chr1 131851137 131851244 -65344188 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1590 409 238 65 0 chr1 131851600 131851768 -65343664 + (ATGTG)n Simple_repeat Simple_repeat 2 180 0 5 1590 246 32 0 0 chr1 131852987 131853018 -65342414 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1590 274 107 36 0 chr1 131855173 131855229 -65340203 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 1590 238 318 90 51 chr1 131855264 131855420 -65340012 - RSINE1 SINE B4 0 165 4 5 1590 1937 116 22 53 chr1 131855851 131856147 -65339285 + RMER17A2 LTR ERVK 1 291 -615 5 1590 257 0 30 0 chr1 131856147 131856180 -65339252 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1590 1937 146 36 52 chr1 131856180 131856256 -65339176 + RMER17A2 LTR ERVK 292 369 -440 5 1590 540 30 0 0 chr1 131856256 131856322 -65339110 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1590 1861 249 85 47 chr1 131856322 131856714 -65338718 + RMER17A2 LTR ERVK 370 794 -15 5 1590 249 272 38 28 chr1 131856997 131857103 -65338329 - L1M5 LINE L1 -393 5771 5665 5 1590 244 248 0 17 chr1 131858293 131858412 -65337020 + (CAT)n Simple_repeat Simple_repeat 3 119 0 5 1591 351 367 78 29 chr1 131858440 131858684 -65336748 - LTR16C LTR ERVL -2 487 232 5 1591 798 236 33 33 chr1 131858693 131858903 -65336529 - RLTR22_Mur LTR ERVK -49 1799 1590 5 1591 3784 184 26 56 chr1 131859017 131859555 -65335877 - RLTR22_Mur LTR ERVK -1018 830 304 5 1591 3376 175 15 8 chr1 131859555 131860149 -65335283 - Lx LINE L1 -1 6653 6056 5 1591 3784 184 26 56 chr1 131860149 131860466 -65334966 - RLTR22_Mur LTR ERVK -1545 303 1 5 1591 481 252 44 18 chr1 131861244 131861357 -65334075 + MER5B DNA MER1_type 62 177 -1 5 1591 202 310 220 23 chr1 131861358 131861490 -65333942 - MIR3 SINE MIR -49 159 2 5 1591 1082 123 41 0 chr1 131862211 131862381 -65333051 - B2_Mm2 SINE B2 -17 178 2 5 1591 219 139 0 0 chr1 131862389 131862425 -65333007 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 1591 992 316 11 13 chr1 131863479 131863854 -65331578 - L1M2 LINE L1 -1259 4884 4511 5 1591 26 50 0 0 chr1 131864138 131864178 -65331254 + AT_rich Low_complexity Low_complexity 1 40 0 5 1591 330 26 0 0 chr1 131864264 131864303 -65331129 + (TTA)n Simple_repeat Simple_repeat 2 40 0 5 1591 2127 167 18 38 chr1 131866490 131866938 -65328494 - BGLII_B LTR ERVK 0 441 3 5 1591 441 90 0 0 chr1 131867014 131867081 -65328351 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 5 1591 261 167 0 0 chr1 131867084 131867138 -65328294 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1591 405 39 0 0 chr1 131867141 131867192 -65328240 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1591 234 388 46 7 chr1 131867443 131867596 -65327836 - Zaphod DNA Tip100 0 4031 3873 5 1591 430 308 0 71 chr1 131868429 131868625 -65326807 + B3A SINE B2 2 183 -15 5 1591 780 298 196 35 chr1 131868674 131869055 -65326377 - Charlie1a DNA MER1_type -1 1454 1068 5 1591 704 43 11 0 chr1 131869055 131869147 -65326285 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1591 180 0 0 0 chr1 131869147 131869166 -65326266 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1591 780 298 196 35 chr1 131869166 131869600 -65325832 - Charlie1a DNA MER1_type -388 1067 508 5 1591 23625 128 18 0 chr1 131869681 131873894 -65321538 - L1_Mus3 LINE L1 -75 6563 2244 5 1591 2926 38 0 0 chr1 131873894 131874240 -65321192 + ORR1A0 LTR MaLR 1 346 0 5 1591 12698 56 15 1 chr1 131874240 131875935 -65319497 + ORR1A0-int LTR MaLR 1 1720 -72 5 1591 17791 83 3 14 chr1 131875935 131879184 -65316248 + L1Md_F LINE L1 503 3713 -2170 5 1591 1893 60 8 0 chr1 131879184 131879432 -65316000 + L1Md_F2 LINE L1 6333 6582 0 5 1591 799 31 0 0 chr1 131879434 131879532 -65315900 + ORR1A0-int LTR MaLR 1695 1792 0 5 1591 2859 46 0 0 chr1 131879532 131879878 -65315554 + ORR1A0 LTR MaLR 1 346 0 5 1591 259 200 30 150 chr1 131879878 131879917 -65315515 + ORR1B1 LTR MaLR 69 102 -292 5 1591 6575 153 71 10 chr1 131879917 131882139 -65313293 - L1Md_F LINE L1 -3674 2209 98 5 1591 27 0 0 0 chr1 131882429 131882456 -65312976 + AT_rich Low_complexity Low_complexity 1 27 0 5 1591 554 283 115 23 chr1 131882662 131882922 -65312510 + Lx8 LINE L1 7188 7471 -2 5 1591 494 211 101 21 chr1 131882945 131883134 -65312298 - L1_Mur3 LINE L1 -2180 3697 3494 5 1591 3027 268 60 41 chr1 131883146 131884419 -65311013 - L1_Mur3 LINE L1 -2636 3244 1948 5 1591 180 0 0 0 chr1 131884499 131884519 -65310913 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1591 267 54 0 0 chr1 131884519 131884555 -65310877 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1591 2748 92 3 0 chr1 131885643 131886023 -65309409 - MTA_Mm LTR MaLR 0 396 16 5 1591 497 297 85 78 chr1 131886030 131886326 -65309106 + MLT1A1 LTR MaLR 87 401 -7 5 1591 23 33 0 0 chr1 131886529 131886559 -65308873 + AT_rich Low_complexity Low_complexity 1 30 0 5 1591 579 330 45 5 chr1 131886566 131886764 -65308668 - MER58A DNA MER1_type -10 214 9 5 1591 971 48 16 0 chr1 131887741 131887865 -65307567 - B1_Mm SINE Alu 0 147 22 5 1591 201 175 0 0 chr1 131888826 131888866 -65306566 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1591 693 272 51 74 chr1 131889119 131889472 -65305960 - RLTR15 LTR ERVK -14 345 1 5 1591 1261 257 36 86 chr1 131889596 131890037 -65305395 - MTD LTR MaLR -16 403 4 5 1591 444 37 0 0 chr1 131890957 131891011 -65304421 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1591 1117 249 119 9 chr1 131891371 131891708 -65303724 + MTD LTR MaLR 46 419 0 5 1591 22 56 0 0 chr1 131891720 131891756 -65303676 + AT_rich Low_complexity Low_complexity 1 36 0 5 1591 875 265 158 44 chr1 131892220 131892832 -65302600 - L1MA6 LINE L1 -306 5994 5313 5 1591 32 0 0 0 chr1 131892843 131892875 -65302557 + AT_rich Low_complexity Low_complexity 1 32 0 5 1591 2391 121 3 0 chr1 131892878 131893243 -65302189 - L1_Mm LINE L1 -31 5852 5487 5 1591 431 251 183 13 chr1 131893347 131893735 -65301697 - L1MA6 LINE L1 -2582 3561 3108 5 1591 21 71 0 0 chr1 131893793 131893835 -65301597 + AT_rich Low_complexity Low_complexity 1 42 0 5 1591 21 36 0 0 chr1 131894003 131894031 -65301401 + AT_rich Low_complexity Low_complexity 1 28 0 5 1591 212 257 13 53 chr1 131894165 131894317 -65301115 + A-rich Low_complexity Low_complexity 2 147 0 5 1591 1695 66 25 8 chr1 131894317 131894560 -65300872 + L1Md_F2 LINE L1 6336 6582 0 5 1591 1513 267 14 17 chr1 131894892 131895239 -65300193 - ORR1D2 LTR MaLR -24 346 1 5 1591 984 319 95 11 chr1 131895771 131896139 -65299293 - MTD LTR MaLR -20 399 1 5 1591 3222 260 145 29 chr1 131896143 131897266 -65298166 - MTD-int LTR MaLR -4 1254 1 5 1591 738 263 111 35 chr1 131897255 131897510 -65297922 - MTD LTR MaLR -1 378 109 5 1591 33054 71 9 3 chr1 131897514 131903696 -65291736 - L1Md_F2 LINE L1 -12 6570 350 5 1591 381 241 97 65 chr1 131903696 131903851 -65291581 - MTD LTR MaLR -249 170 11 5 1591 25 0 0 0 chr1 131905720 131905745 -65289687 + AT_rich Low_complexity Low_complexity 1 25 0 5 1591 2089 175 220 12 chr1 131907585 131908104 -65287328 - RMER20B LTR ERVK 0 627 1 5 1591 991 152 0 12 chr1 131908147 131908395 -65287037 + CT-rich Low_complexity Low_complexity 1 244 0 5 1591 1407 50 0 0 chr1 131908395 131908575 -65286857 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1591 1082 123 0 11 chr1 131908586 131908767 -65286665 + (TCC)n Simple_repeat Simple_repeat 1 179 0 5 1591 324 64 0 0 chr1 131908779 131908826 -65286606 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 5 1591 5668 184 29 32 chr1 131908826 131910841 -65284591 - Lx5 LINE L1 -16 7034 5079 5 1591 857 242 95 10 chr1 131911384 131911485 -65283947 - Lx9 LINE L1 -6 7638 7538 5 1591 489 34 0 0 chr1 131911485 131911544 -65283888 + (TTA)n Simple_repeat Simple_repeat 2 60 0 5 1591 857 242 95 10 chr1 131911544 131911746 -65283686 - Lx9 LINE L1 -107 7537 7309 5 1591 441 95 0 0 chr1 131912395 131912458 -65282974 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1591 25 65 0 0 chr1 131912541 131912587 -65282845 + AT_rich Low_complexity Low_complexity 1 46 0 5 1591 10418 270 72 21 chr1 131912711 131914220 -65281212 - Lx7 LINE L1 -281 7415 5842 5 1591 3209 110 2 8 chr1 131914220 131914706 -65280726 - L1_Mus4 LINE L1 0 6636 6154 5 1591 10418 235 68 88 chr1 131914706 131915260 -65280172 - Lx7 LINE L1 -39 5841 5242 5 1591 312 27 0 0 chr1 131915260 131915297 -65280135 + (TTG)n Simple_repeat Simple_repeat 3 39 0 5 1591 10418 235 68 88 chr1 131915297 131916127 -65279305 - Lx7 LINE L1 -639 5241 4445 5 1591 1599 6 0 0 chr1 131916127 131916307 -65279125 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1591 10418 235 68 88 chr1 131916307 131917411 -65278021 - Lx7 LINE L1 -1436 4444 3394 5 1591 3590 119 0 53 chr1 131917411 131917996 -65277436 - Lx LINE L1 -6 6648 6095 5 1591 10418 238 66 86 chr1 131917996 131920361 -65275071 - Lx7 LINE L1 -2487 3393 1075 5 1591 287 406 16 0 chr1 131920677 131920805 -65274627 + B3A SINE B2 3 132 -66 5 1591 602 284 0 56 chr1 131920805 131921003 -65274429 - Lx9 LINE L1 -473 7171 6985 5 1591 341 22 22 0 chr1 131921271 131921317 -65274115 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1591 1495 269 32 28 chr1 131921325 131921760 -65273672 + Lx9 LINE L1 6488 6924 -720 5 1591 615 280 8 0 chr1 131922411 131922543 -65272889 + ID_B1 SINE B4 2 134 -90 5 1591 593 232 35 7 chr1 131922546 131922689 -65272743 - ORR1D1 LTR MaLR -227 147 1 5 1591 19545 101 5 1 chr1 131924632 131928381 -65267051 - L1_Mus1 LINE L1 -2 6565 2803 5 1591 39441 5 0 0 chr1 131928404 131934975 -65260457 - L1Md_A LINE L1 0 6582 12 5 1591 9872 136 33 26 chr1 131934979 131937597 -65257835 - L1_Mus1 LINE L1 -3069 2814 177 5 1591 1529 218 103 5 chr1 131937611 131938036 -65257396 - Lx9 LINE L1 -8 7636 7170 5 1591 513 0 0 0 chr1 131938674 131938731 -65256701 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1591 342 45 0 0 chr1 131939562 131939606 -65255826 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1591 243 0 0 0 chr1 131940444 131940471 -65254961 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1591 466 308 90 71 chr1 131940663 131940917 -65254515 - LTR16B2 LTR ERVL -173 289 31 5 1591 461 285 18 76 chr1 131940917 131941088 -65254344 - MER5A1 DNA MER1_type -3 163 3 5 1591 474 353 79 35 chr1 131941372 131941713 -65253719 - MER74A LTR ERVL -56 502 147 5 1591 336 48 0 0 chr1 131943116 131943158 -65252274 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 5 1591 465 293 17 0 chr1 131943449 131943565 -65251867 - B3 SINE B2 -96 120 3 5 1591 340 289 0 57 chr1 131943600 131943758 -65251674 - Lx9 LINE L1 -1 7643 7495 5 1591 260 337 49 10 chr1 131945515 131945617 -65249815 - B4A SINE B4 -1 291 186 5 1591 206 220 34 0 chr1 131945825 131945884 -65249548 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 5 1591 502 308 44 60 chr1 131946056 131946509 -65248923 - L1MEf LINE L1 -4503 1697 1252 5 1591 278 235 60 24 chr1 131946765 131946848 -65248584 + MTEa LTR MaLR 279 364 -15 5 1591 402 21 0 0 chr1 131947240 131947287 -65248145 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1591 21 0 0 0 chr1 131948460 131948481 -65246951 + AT_rich Low_complexity Low_complexity 1 21 0 5 1591 700 237 0 50 chr1 131948571 131948731 -65246701 - B3 SINE B2 -64 152 1 6 1591 3538 79 33 8 chr1 131949705 131950191 -65245241 - L1Md_F2 LINE L1 -10 6572 6075 6 1591 3444 28 16 0 chr1 131950191 131950622 -65244810 + L1Md_F2 LINE L1 5649 6086 -496 6 1591 254 347 70 31 chr1 131951327 131951455 -65243977 + MIRb SINE MIR 59 191 -77 6 1591 230 282 172 6 chr1 131951462 131951619 -65243813 - LTR33B LTR ERVL -2 501 319 6 1591 7149 128 4 7 chr1 131952444 131954322 -65241110 - Lx LINE L1 -3 6651 4779 6 1591 793 186 13 46 chr1 131954322 131954474 -65240958 + ORR1D1 LTR MaLR 35 181 -193 6 1591 405 109 0 0 chr1 131954474 131954538 -65240894 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1591 896 228 67 5 chr1 131954541 131954735 -65240697 + ORR1D1 LTR MaLR 169 374 0 6 1591 338 147 15 0 chr1 131954886 131954954 -65240478 + (ATG)n Simple_repeat Simple_repeat 1 69 0 6 1591 471 78 0 0 chr1 131955337 131955401 -65240031 + (TTA)n Simple_repeat Simple_repeat 2 65 0 6 1591 4085 198 83 3 chr1 131955401 131956299 -65239133 - Lx4B LINE L1 -19 7039 6070 6 1591 4539 134 4 0 chr1 131956299 131957052 -65238380 + L1_Mur2 LINE L1 4131 4886 -991 6 1591 393 75 0 0 chr1 131957057 131957110 -65238322 + (CCA)n Simple_repeat Simple_repeat 1 53 0 6 1591 1877 204 74 5 chr1 131957367 131957757 -65237675 + MTD LTR MaLR 3 419 0 6 1591 1564 177 194 3 chr1 131959727 131960113 -65235319 - RMER6C LTR ERVK 0 690 231 6 1591 216 0 0 0 chr1 131960823 131960847 -65234585 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1591 2188 209 42 63 chr1 131960847 131961418 -65234014 - Lx5 LINE L1 -13 7037 6479 6 1591 1858 172 14 3 chr1 131961431 131961775 -65233657 - L1_Mur2 LINE L1 -13 5864 5517 6 1591 1038 102 72 0 chr1 131961773 131961939 -65233493 - L1_Mur2 LINE L1 -964 4913 4736 6 1591 4670 148 21 16 chr1 131961940 131962832 -65232600 + L1_Mur2 LINE L1 3815 4711 -1166 6 1591 878 279 5 0 chr1 131962849 131963057 -65232375 + B3 SINE B2 8 216 0 6 1591 237 292 19 19 chr1 131963921 131964029 -65231403 + (TA)n Simple_repeat Simple_repeat 2 109 0 6 1591 250 267 112 19 chr1 131966605 131966712 -65228720 + MLT1K LTR MaLR 472 588 -7 6 1591 246 320 78 29 chr1 131966926 131967029 -65228403 + MIR SINE MIR 82 189 -73 6 1591 2806 127 17 21 chr1 131967119 131967587 -65227845 - Lx3A LINE L1 -3 6978 6513 6 1591 349 83 0 0 chr1 131967587 131967635 -65227797 + Lx3_Mus LINE L1 6476 6523 -486 6 1591 3930 69 8 2 chr1 131967747 131968255 -65227177 - L1_Mus1 LINE L1 -2 6565 6055 6 1591 2262 267 43 2 chr1 131968355 131968895 -65226537 + Lx5 LINE L1 6477 7038 -12 6 1591 437 182 10 0 chr1 131969476 131969575 -65225857 + GA-rich Low_complexity Low_complexity 1 100 0 6 1591 377 312 141 82 chr1 131970016 131970300 -65225132 - MLT1A1 LTR MaLR 0 374 57 6 1591 21 82 0 0 chr1 131972061 131972110 -65223322 + AT_rich Low_complexity Low_complexity 1 49 0 6 1591 1319 93 0 10 chr1 131972342 131972538 -65222894 + B2_Mm2 SINE B2 2 195 0 6 1591 365 211 0 22 chr1 131972735 131972827 -65222605 + L1_Rod LINE L1 5505 5594 -253 6 1591 321 270 46 7 chr1 131972856 131973009 -65222423 + L1MA4 LINE L1 5729 5887 -413 6 1591 296 295 21 10 chr1 131973913 131974009 -65221423 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 6 1591 3348 249 68 9 chr1 131975710 131976622 -65218810 - RCHARR1 DNA MER1_type -2 972 7 6 1591 395 331 120 34 chr1 131976628 131976894 -65218538 - MLT2B3 LTR ERVL -16 538 250 6 1591 24 32 0 0 chr1 131978275 131978306 -65217126 + AT_rich Low_complexity Low_complexity 1 31 0 6 1591 186 103 0 0 chr1 131978921 131978950 -65216482 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1591 268 325 98 39 chr1 131980810 131981371 -65214061 + L1MB7 LINE L1 5416 6009 -175 6 1591 936 218 14 45 chr1 131981448 131981669 -65213763 + B3 SINE B2 3 216 0 6 1591 250 362 26 0 chr1 131982479 131982595 -65212837 - AmnSINE1 SINE SINE -59 516 398 6 1591 200 139 28 0 chr1 131984187 131984223 -65211209 + (TTG)n Simple_repeat Simple_repeat 2 38 0 6 1591 378 0 0 0 chr1 131986024 131986066 -65209366 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1591 225 0 0 0 chr1 131986066 131986090 -65209342 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1591 501 250 166 6 chr1 131986109 131986266 -65209166 - B3A SINE B2 -16 182 1 6 1591 246 193 0 0 chr1 131986345 131986402 -65209030 + (TATG)n Simple_repeat Simple_repeat 2 58 0 6 1591 233 205 70 32 chr1 131986415 131986571 -65208861 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 6 1591 519 327 55 0 chr1 131986643 131986918 -65208514 - L1MB1 LINE L1 -1 6167 5878 6 1591 949 93 21 0 chr1 131987895 131988035 -65207397 + B1_Mus1 SINE Alu 6 148 0 6 1591 455 218 1 0 chr1 131988730 131988817 -65206615 + PB1D9 SINE Alu 12 99 -21 6 1591 238 152 34 0 chr1 131988817 131988876 -65206556 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1591 25 0 0 0 chr1 131988880 131988905 -65206527 + AT_rich Low_complexity Low_complexity 1 25 0 6 198 7534 98 8 0 chr1 131989075 131990657 -65204775 - L1_Mus3 LINE L1 -1 6637 5045 6 1592 650 321 29 8 chr1 131991778 131992017 -65203415 - MER2 DNA MER2_type -7 338 95 6 1592 833 263 69 89 chr1 131992129 131992213 -65203219 + ORR1E LTR MaLR 9 87 -272 6 1592 1001 185 66 5 chr1 131992213 131992425 -65203007 - URR1B DNA MER1_type 0 225 1 6 1592 833 263 69 89 chr1 131992425 131992687 -65202745 + ORR1E LTR MaLR 88 348 -11 6 1592 684 0 0 0 chr1 131994539 131994615 -65200817 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1592 247 372 0 0 chr1 131995000 131995078 -65200354 + ID4_ SINE ID 6 83 0 6 1592 8595 68 7 3 chr1 131996283 131998134 -65197298 - L1Md_F2 LINE L1 -2 6580 4720 6 1592 1693 183 3 6 chr1 131998134 131998469 -65196963 + L1Md_F LINE L1 130 463 -6056 6 1592 26 0 0 0 chr1 131998761 131998787 -65196645 + AT_rich Low_complexity Low_complexity 1 26 0 6 1592 402 21 0 0 chr1 131998837 131998884 -65196548 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1592 857 161 12 0 chr1 131999003 131999165 -65196267 + GA-rich Low_complexity Low_complexity 3 166 0 6 1592 213 62 62 0 chr1 131999167 131999199 -65196233 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 6 1592 270 0 0 0 chr1 132000306 132000336 -65195096 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 1592 645 80 71 0 chr1 132000557 132000669 -65194763 + L1_Mus3 LINE L1 6519 6638 0 2 1592 1240 27 0 0 chr1 132000672 132000818 -65194614 + B1_Mm SINE Alu 2 147 0 3 1592 208 91 0 43 chr1 132000838 132000884 -65194548 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 4 1592 193 0 94 0 chr1 132002179 132002211 -65193221 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1592 35467 78 1 8 chr1 132002214 132008530 -65186902 - L1Md_F2 LINE L1 -19 6563 307 6 1592 674 326 208 36 chr1 132008982 132009919 -65185513 - L2 LINE L2 -561 2858 1761 7 1592 422 338 40 53 chr1 132010050 132010275 -65185157 + MLT1D LTR MaLR 1 222 -283 8 1592 396 350 40 22 chr1 132010456 132010681 -65184751 - HAL1 LINE L1 -1995 512 284 9 1592 393 339 93 19 chr1 132011915 132012336 -65183096 - L1ME3A LINE L1 -28 6145 5694 1 1592 24 53 0 0 chr1 132016322 132016360 -65179072 + AT_rich Low_complexity Low_complexity 1 38 0 1 1592 204 40 0 0 chr1 132016394 132016419 -65179013 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1592 459 0 0 0 chr1 132016456 132016507 -65178925 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1592 1578 264 29 56 chr1 132016523 132017040 -65178392 - Lx9 LINE L1 -204 7440 6938 1 1592 564 134 0 0 chr1 132018520 132018617 -65176815 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 1 1592 31 88 0 0 chr1 132019376 132019456 -65175976 + AT_rich Low_complexity Low_complexity 1 80 0 1 1592 504 0 0 0 chr1 132019465 132019521 -65175911 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1 1592 371 305 105 35 chr1 132020602 132020830 -65174602 - L1ME3 LINE L1 -62 6100 5857 1 1592 236 183 133 0 chr1 132020843 132020903 -65174529 - L1M5 LINE L1 -255 5918 5851 1 1592 21 0 0 0 chr1 132021184 132021205 -65174227 + AT_rich Low_complexity Low_complexity 1 21 0 2 1592 381 22 0 0 chr1 132021320 132021366 -65174066 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1592 319 97 43 101 chr1 132021509 132021578 -65173854 - HAL1-3A_ME LINE L1 -819 2039 1975 2 1592 256 336 58 31 chr1 132022170 132022428 -65173004 - L1ME3 LINE L1 -1322 4824 4560 1 1592 231 355 45 5 chr1 132022474 132022672 -65172760 - L1ME3 LINE L1 -1665 4481 4276 1 1592 378 0 0 0 chr1 132023190 132023232 -65172200 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1592 557 277 56 14 chr1 132023861 132024004 -65171428 - B1F SINE Alu 0 149 1 2 1592 8364 34 9 0 chr1 132024368 132025556 -65169876 - L1Md_F3 LINE L1 -2 6582 5379 2 1592 256 261 157 14 chr1 132026222 132026292 -65169140 + PB1D10 SINE Alu 1 80 -37 2 1592 680 314 118 16 chr1 132026403 132026700 -65168732 - ORR1E LTR MaLR -3 376 24 2 1592 189 0 0 0 chr1 132026962 132026983 -65168449 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1592 372 22 0 0 chr1 132027863 132027908 -65167524 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1592 216 330 128 56 chr1 132028071 132028267 -65167165 - MIRb SINE MIR -44 224 15 3 1592 2632 168 152 22 chr1 132028590 132029131 -65166301 - RMER19C LTR ERVK 0 611 1 3 1592 928 84 21 0 chr1 132029600 132029743 -65165689 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 3 1592 740 263 29 0 chr1 132030129 132030300 -65165132 + Lx6 LINE L1 7257 7432 -28 3 1592 410 287 59 0 chr1 132030356 132030492 -65164940 + B1F SINE Alu 1 144 -5 3 1592 23 54 0 0 chr1 132030620 132030657 -65164775 + AT_rich Low_complexity Low_complexity 1 37 0 3 1592 246 62 0 0 chr1 132030660 132030692 -65164740 + (TATG)n Simple_repeat Simple_repeat 4 35 0 3 1592 465 300 48 130 chr1 132030692 132030899 -65164533 - B3 SINE B2 -26 190 1 3 1592 21 71 0 0 chr1 132031385 132031427 -65164005 + AT_rich Low_complexity Low_complexity 1 42 0 3 1592 288 0 0 0 chr1 132031493 132031525 -65163907 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 3 1592 282 220 243 18 chr1 132031525 132031627 -65163805 - B1F SINE Alu -12 137 9 4 1592 671 300 38 41 chr1 132032532 132032767 -65162665 + RLTR15 LTR ERVK 1 228 -131 4 1592 279 0 0 0 chr1 132032767 132032798 -65162634 + (TTTAA)n Simple_repeat Simple_repeat 4 34 0 4 1592 671 300 38 41 chr1 132032798 132032906 -65162526 + RLTR15 LTR ERVK 229 342 -17 4 1592 924 111 0 32 chr1 132033188 132033374 -65162058 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1592 241 306 15 61 chr1 132033664 132033796 -65161636 - L1MC4 LINE L1 -125 7917 7792 4 1592 232 189 208 62 chr1 132033951 132034047 -65161385 - L1MC4 LINE L1 -397 7645 7536 4 1592 532 250 9 0 chr1 132034703 132034819 -65160613 - MTD LTR MaLR -41 378 262 4 1592 470 268 164 6 chr1 132034823 132034988 -65160444 - Lx8 LINE L1 -237 7236 7046 4 1592 405 0 0 0 chr1 132035054 132035099 -65160333 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1592 389 357 6 6 chr1 132035198 132035370 -65160062 - Lx8 LINE L1 -885 6811 6640 4 1592 500 192 49 24 chr1 132035372 132035495 -65159937 - MTC LTR MaLR 0 419 294 4 1592 313 352 12 64 chr1 132035534 132035707 -65159725 + RMER4A LTR ERVK 5 168 -298 5 1592 753 180 0 0 chr1 132035888 132036010 -65159422 - MTC LTR MaLR -95 326 205 4 1592 926 81 15 0 chr1 132036014 132036150 -65159282 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 5 1592 1377 316 21 29 chr1 132036157 132036636 -65158796 - Lx5 LINE L1 0 7050 6576 5 1592 1061 197 60 0 chr1 132036638 132036856 -65158576 - MTC LTR MaLR -190 231 1 4 1592 385 217 2 13 chr1 132036857 132036944 -65158488 - Lx8 LINE L1 -822 6651 6559 4 1592 974 227 114 65 chr1 132036959 132037436 -65157996 - RMER2 LTR ERV1 -28 539 1 5 1592 786 311 46 97 chr1 132037437 132037893 -65157539 - Lx8 LINE L1 -900 6573 6141 4 1592 464 293 105 24 chr1 132038152 132038362 -65157070 - MER47B DNA MER2_type -171 247 21 5 1592 267 295 138 31 chr1 132038989 132039185 -65156247 + MIR SINE MIR 41 257 -5 5 1592 294 330 11 0 chr1 132039275 132039366 -65156066 + MTE2b LTR MaLR 6 97 -282 5 1592 1175 238 75 75 chr1 132039368 132039690 -65155742 + MTE2b LTR MaLR 58 379 0 5 1592 3216 150 3 1 chr1 132039703 132040354 -65155078 - Lx4A LINE L1 -1049 6009 5350 5 1592 23071 119 60 60 chr1 132040355 132044514 -65150918 - Lx2 LINE L1 -2 6995 2785 5 1592 408 20 0 0 chr1 132044514 132044563 -65150869 + (TTG)n Simple_repeat Simple_repeat 1 49 0 5 1592 23071 117 71 67 chr1 132044563 132045208 -65150224 - Lx2 LINE L1 -3093 2784 2155 5 1592 5351 121 12 8 chr1 132045208 132046043 -65149389 - Lx3_Mus LINE L1 -1 7008 6171 6 1592 23071 117 71 67 chr1 132046043 132046171 -65149261 - Lx2 LINE L1 -3723 2154 2073 5 1592 182 91 30 0 chr1 132046171 132046204 -65149228 + (TGG)n Simple_repeat Simple_repeat 1 34 0 6 1592 23071 117 71 67 chr1 132046204 132046902 -65148530 - Lx2 LINE L1 -3805 2072 1376 5 1592 417 284 115 81 chr1 132047439 132047699 -65147733 - MLT1J1 LTR MaLR -115 329 61 6 1592 279 285 39 26 chr1 132048946 132049101 -65146331 - L1MC4a LINE L1 -465 7496 7340 6 1592 312 335 38 54 chr1 132049591 132049777 -65145655 - L1MC4a LINE L1 -1024 6858 6676 6 1592 340 278 31 31 chr1 132050180 132050310 -65145122 - L1MC4 LINE L1 -4476 1739 1610 6 1592 228 67 0 0 chr1 132052732 132052762 -65142670 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 6 1592 489 135 0 0 chr1 132052762 132052836 -65142596 - B2_Mm2 SINE B2 -34 161 88 6 1592 985 205 5 10 chr1 132053016 132053213 -65142219 + URR1B DNA MER1_type 1 196 -29 6 1592 878 58 8 0 chr1 132053257 132053378 -65142054 + (TTC)n Simple_repeat Simple_repeat 3 124 0 6 1592 26 30 0 0 chr1 132054348 132054381 -65141051 + AT_rich Low_complexity Low_complexity 1 33 0 6 1592 2452 104 14 16 chr1 132055017 132055388 -65140044 + L1_Mus1 LINE L1 6185 6554 -13 7 1592 983 54 0 8 chr1 132055388 132055519 -65139913 + (GGAA)n Simple_repeat Simple_repeat 4 133 0 7 1592 1540 65 11 5 chr1 132057045 132057232 -65138200 - B2_Mm2 SINE B2 -7 188 1 7 1592 338 352 55 21 chr1 132057467 132057612 -65137820 - MLT1A0 LTR MaLR -202 163 14 7 1592 219 36 0 0 chr1 132057761 132057789 -65137643 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1592 387 171 9 37 chr1 132058021 132058130 -65137302 - L1Md_T LINE L1 0 6582 6477 7 1592 7377 105 20 17 chr1 132058150 132059382 -65136050 - Lx LINE L1 -1 6653 5417 7 1592 2501 172 4 75 chr1 132063174 132063483 -65131949 - MTC LTR MaLR 0 421 122 7 1592 1214 75 0 0 chr1 132063483 132063629 -65131803 + B1_Mus1 SINE Alu 3 148 0 7 1592 2501 172 4 75 chr1 132063629 132063772 -65131660 - MTC LTR MaLR -300 121 1 7 1592 21 0 0 0 chr1 132063952 132063973 -65131459 + AT_rich Low_complexity Low_complexity 1 21 0 7 1592 826 267 6 0 chr1 132063983 132064163 -65131269 - B3A SINE B2 -16 182 2 8 1592 288 324 94 14 chr1 132064252 132064390 -65131042 - L2b LINE L2 -1 3374 3226 8 1592 369 0 0 0 chr1 132065085 132065126 -65130306 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1592 185 154 0 25 chr1 132067366 132067406 -65128026 + (TTA)n Simple_repeat Simple_repeat 1 39 0 8 1592 616 178 7 169 chr1 132070739 132071017 -65124415 + Lx9 LINE L1 7412 7644 0 8 1592 282 292 90 71 chr1 132071690 132071845 -65123587 - MIRc SINE MIR -109 159 2 8 1592 2459 120 12 3 chr1 132072059 132072402 -65123030 - ORR1A1 LTR MaLR 0 346 1 8 1592 889 280 180 16 chr1 132072949 132073399 -65122033 - Lx8 LINE L1 -63 7410 6887 8 1592 15214 57 43 0 chr1 132073374 132075872 -65119560 - L1Md_F2 LINE L1 -3 6579 3974 8 1592 528 59 0 0 chr1 132076199 132076267 -65119165 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1592 1711 291 33 10 chr1 132078713 132079227 -65116205 + Lx5 LINE L1 6525 7050 0 9 1592 524 311 53 23 chr1 132080008 132080271 -65115161 - MER2 DNA MER2_type -37 308 38 9 1592 207 259 34 17 chr1 132080307 132080366 -65115066 + MIRb SINE MIR 195 254 -14 9 1592 305 345 45 0 chr1 132081363 132081473 -65113959 + MLT1A1 LTR MaLR 288 402 -6 9 1592 365 285 76 0 chr1 132081656 132081800 -65113632 - Tigger7 DNA MER2_type -32 2459 2305 9 1592 511 35 0 0 chr1 132081803 132081861 -65113571 - Lx2A LINE L1 -260 6748 6691 9 1592 1724 149 11 0 chr1 132081861 132082123 -65113309 + Lx2A LINE L1 6725 6989 -19 9 1592 258 32 0 0 chr1 132082123 132082154 -65113278 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1592 820 325 74 11 chr1 132082194 132082477 -65112955 - Tigger7 DNA MER2_type -2154 337 37 9 1592 6431 78 83 2 chr1 132083067 132083893 -65111539 + RLTR13B1 LTR ERVK 1 893 0 9 1592 1553 39 61 0 chr1 132084671 132084851 -65110581 - B2_Mm1t SINE B2 -2 191 1 9 1592 567 0 0 0 chr1 132085362 132085425 -65110007 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1 1592 422 165 35 12 chr1 132086045 132086131 -65109301 - Lx7 LINE L1 -2 7694 7607 1 1592 449 332 73 80 chr1 132087282 132087707 -65107725 - Charlie7 DNA MER1_type -1870 742 321 1 1592 807 11 0 0 chr1 132087716 132087808 -65107624 + (TCC)n Simple_repeat Simple_repeat 1 92 0 1 1592 570 124 0 0 chr1 132089272 132089361 -65106071 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1592 500 106 11 0 chr1 132089722 132089816 -65105616 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1592 180 111 0 0 chr1 132089826 132089853 -65105579 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1592 279 181 202 0 chr1 132091343 132091437 -65103995 + Lx4A LINE L1 6946 7058 0 1 1592 197 65 0 31 chr1 132091948 132091980 -65103452 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 1 1592 890 180 0 6 chr1 132094119 132094298 -65101134 + GA-rich Low_complexity Low_complexity 3 180 0 1 1592 224 314 56 28 chr1 132094300 132094408 -65101024 - MIRm SINE MIR -140 136 19 1 1592 988 158 20 0 chr1 132095005 132095151 -65100281 + B1_Mur4 SINE Alu 2 150 0 1 1592 493 88 25 0 chr1 132095168 132095248 -65100184 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1592 687 84 0 0 chr1 132095269 132095364 -65100068 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 1 1592 3037 64 0 0 chr1 132095364 132095740 -65099692 - L1_Mus3 LINE L1 -208 6430 6055 1 1592 1614 95 54 0 chr1 132095740 132095962 -65099470 + L1_Mus3 LINE L1 6401 6634 -4 1 1592 39100 9 0 8 chr1 132096227 132101452 -65093980 + L1Md_A LINE L1 406 5586 -297 1 1592 9363 17 0 0 chr1 132101452 132102448 -65092984 + L1Md_A LINE L1 5587 6582 0 1 1592 3848 78 33 12 chr1 132102665 132103183 -65092249 + Lx LINE L1 6126 6654 0 1 1592 786 41 0 0 chr1 132103240 132103338 -65092094 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 1 1592 933 79 0 0 chr1 132103340 132103467 -65091965 + (GAAA)n Simple_repeat Simple_repeat 1 127 0 1 1592 993 31 16 0 chr1 132103488 132103615 -65091817 - MTA_Mm LTR MaLR -30 366 238 1 1592 714 336 31 49 chr1 132103676 132103964 -65091468 - B4A SINE B4 -4 288 6 1 1592 25 0 0 0 chr1 132104580 132104605 -65090827 + AT_rich Low_complexity Low_complexity 1 25 0 1 1592 205 137 108 14 chr1 132105311 132105385 -65090047 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 1592 350 245 0 50 chr1 132105391 132105490 -65089942 - Lx8 LINE L1 -147 7326 7233 1 1592 306 107 0 0 chr1 132105491 132105547 -65089885 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1592 892 260 45 71 chr1 132105547 132105858 -65089574 - Lx8 LINE L1 -235 7238 6936 1 1592 21 36 0 0 chr1 132106374 132106402 -65089030 + AT_rich Low_complexity Low_complexity 1 28 0 1 1592 216 0 0 0 chr1 132106694 132106718 -65088714 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1592 297 0 0 0 chr1 132106718 132106750 -65088682 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1592 210 325 70 9 chr1 132107199 132107314 -65088118 - MER5B DNA MER1_type -51 127 6 1 1592 3315 56 0 5 chr1 132107362 132107759 -65087673 - L1Md_F2 LINE L1 -1 6581 6187 1 1592 239 138 0 33 chr1 132108969 132109029 -65086403 + (TCTCTG)n Simple_repeat Simple_repeat 1 58 0 1 1592 714 67 0 0 chr1 132109058 132109163 -65086269 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1592 212 366 48 29 chr1 132109197 132109301 -65086131 - B1_Mus1 SINE Alu -40 108 3 1 1592 279 0 0 0 chr1 132111426 132111457 -65083975 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1592 1239 43 0 0 chr1 132111457 132111595 -65083837 - B1_Mus1 SINE Alu -10 138 1 1 1592 202 29 0 54 chr1 132113075 132113112 -65082320 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1592 411 213 26 7 chr1 132113285 132113420 -65082012 + L1MB7 LINE L1 5872 6004 -170 1 1592 241 299 44 33 chr1 132113594 132113684 -65081748 + MIRb SINE MIR 162 252 -16 1 1592 492 137 0 0 chr1 132113735 132113837 -65081595 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 1592 24 32 0 0 chr1 132115614 132115645 -65079787 + AT_rich Low_complexity Low_complexity 1 31 0 1 1592 2018 270 35 2 chr1 132117158 132117760 -65077672 + Lx7 LINE L1 6739 7360 -336 1 1592 660 94 0 0 chr1 132117760 132117866 -65077566 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1592 259 167 81 27 chr1 132118059 132118133 -65077299 + Lx7 LINE L1 7609 7686 -10 1 1592 269 163 0 0 chr1 132118290 132118339 -65077093 + Charlie8 DNA MER1_type 104 152 -2276 1 1592 454 299 60 6 chr1 132119003 132119171 -65076261 + MER58A DNA MER1_type 47 223 -1 1 1592 817 35 18 0 chr1 132119225 132119338 -65076094 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 1592 405 39 0 0 chr1 132119338 132119389 -65076043 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1592 203 353 44 0 chr1 132119460 132119528 -65075904 + L2b LINE L2 3213 3283 -92 1 1592 1023 242 125 56 chr1 132119891 132120228 -65075204 - RMER13B LTR ERVK -4 904 545 1 24 3365 35 5 0 chr1 132120233 132120627 -65074805 + MTA_Mm LTR MaLR 1 396 0 1 1593 2640 214 38 111 chr1 132120632 132121474 -65073958 - RMER17B LTR ERVK -177 781 1 1 1593 2443 185 60 89 chr1 132121489 132122380 -65073052 + RMER6C LTR ERVK 3 716 -4 1 1593 1154 271 86 47 chr1 132123226 132123714 -65071718 - MER119 DNA MER1_type -5 578 72 1 1593 908 280 115 0 chr1 132124146 132124425 -65071007 - MTD LTR MaLR 0 419 109 1 1593 1190 255 108 0 chr1 132124495 132124883 -65070549 - Lx9 LINE L1 -257 7387 6958 1 1593 1782 300 95 45 chr1 132124911 132125394 -65070038 - L1M2 LINE L1 -140 5740 5246 1 1593 1169 71 0 0 chr1 132125394 132125548 -65069884 - L1_Mus2 LINE L1 0 6566 6413 1 1593 1782 292 143 37 chr1 132125548 132126672 -65068760 - L1M2 LINE L1 -862 5281 3993 1 1593 3584 15 0 0 chr1 132126672 132127068 -65068364 - MTA_Mm LTR MaLR 0 396 1 1 1593 9699 16 0 0 chr1 132127068 132128166 -65067266 - MTA_Mm-int LTR MaLR 0 1098 1 1 1593 3564 18 0 0 chr1 132128166 132128562 -65066870 - MTA_Mm LTR MaLR 0 396 1 1 1593 1782 292 143 37 chr1 132128562 132128788 -65066644 - L1M2 LINE L1 -2151 3992 3772 1 1593 4174 74 4 4 chr1 132128833 132129386 -65066046 - L1_Mus3 LINE L1 -8 6630 6078 1 1593 289 0 24 24 chr1 132129429 132129471 -65065961 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1593 870 168 0 7 chr1 132129472 132129610 -65065822 - B1_Mus1 SINE Alu -9 139 3 1 1593 3170 132 97 34 chr1 132130131 132130780 -65064652 - RMER6C LTR ERVK 0 690 1 1 1593 1655 216 77 8 chr1 132132063 132132427 -65063005 + MTD LTR MaLR 13 401 -18 1 1593 463 335 141 8 chr1 132133435 132133691 -65061741 + MLT1F LTR MaLR 117 406 -163 1 1593 247 232 51 51 chr1 132133969 132134028 -65061404 - B4 SINE B4 -10 282 224 1 1593 2839 38 18 6 chr1 132134945 132135287 -65060145 + ORR1A1 LTR MaLR 1 346 0 1 1593 367 259 12 0 chr1 132135338 132135423 -65060009 + MTE2b LTR MaLR 16 101 -278 1 1593 647 257 5 112 chr1 132135460 132135666 -65059766 + MTE2b LTR MaLR 194 377 -2 1 1593 447 306 87 65 chr1 132135714 132136084 -65059348 + L1M5 LINE L1 4088 4465 -1681 1 1593 1372 286 53 17 chr1 132136139 132136798 -65058634 + L1M5 LINE L1 4556 5238 -908 1 1593 233 217 0 0 chr1 132136800 132136846 -65058586 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1 1593 361 253 0 31 chr1 132136851 132136949 -65058483 - RMER12 LTR ERVK -471 851 757 1 1593 266 234 22 135 chr1 132137032 132137121 -65058311 - B1_Mur4 SINE Alu -8 109 31 1 1593 226 254 18 0 chr1 132137436 132137491 -65057941 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 1 1593 306 0 0 0 chr1 132138668 132138702 -65056730 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1593 1201 42 7 0 chr1 132138702 132138845 -65056587 - B1_Mus1 SINE Alu -4 144 1 1 1593 198 91 0 0 chr1 132139023 132139056 -65056376 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1593 308 226 0 11 chr1 132139583 132139602 -65055830 + polypurine Low_complexity Low_complexity 2 20 0 1 1593 1167 81 0 0 chr1 132139602 132139762 -65055670 + (GGAGAA)n Simple_repeat Simple_repeat 2 161 0 1 1593 308 226 0 11 chr1 132139762 132139836 -65055596 + GA-rich Low_complexity Low_complexity 21 94 0 1 1593 600 247 7 33 chr1 132140027 132140178 -65055254 - B1F1 SINE Alu -1 148 2 1 1593 2425 39 32 16 chr1 132141249 132141563 -65053869 - L1Md_F3 LINE L1 -2 6582 6264 1 1593 1051 323 109 2 chr1 132141607 132142112 -65053320 - Lx8 LINE L1 -127 7346 6788 1 1593 2674 110 43 8 chr1 132142130 132142525 -65052907 - RLTR9E LTR ERVK 0 409 1 1 1593 494 96 16 34 chr1 132142525 132142614 -65052818 - ETnERV2-int LTR ERVK 0 7406 7331 1 1593 1872 158 34 32 chr1 132142831 132143275 -65052157 - RLTR45-int LTR ERVK -1230 4176 4122 1 1593 4271 61 29 7 chr1 132143275 132143823 -65051609 - LTRIS2 LTR ERV1 0 564 5 1 1593 2319 184 105 101 chr1 132143823 132144772 -65050660 - RLTR45-int LTR ERVK -1804 5440 4676 1 1593 16286 93 12 2 chr1 132144764 132147064 -65048368 - ETnERV2-int LTR ERVK -1644 5762 3441 1 1593 5164 136 38 22 chr1 132147278 132148281 -65047151 - ETnERV2-int LTR ERVK -3958 3448 1995 1 1593 4689 155 57 24 chr1 132148306 132149289 -65046143 - ETnERV2-int LTR ERVK -5321 2085 1071 1 1593 700 259 116 28 chr1 132149299 132149652 -65045780 - ETnERV2-int LTR ERVK -2927 387 4 1 1593 2452 118 51 10 chr1 132149670 132150063 -65045369 - RLTR9E LTR ERVK 0 409 1 1 1593 30689 84 12 4 chr1 132150088 132155267 -65040165 + L1Md_F2 LINE L1 360 5585 -298 1 1593 7686 66 8 6 chr1 132155268 132156262 -65039170 + L1Md_F2 LINE L1 5587 6582 0 1 1593 626 348 42 15 chr1 132156274 132156607 -65038825 - Lx8 LINE L1 -714 6759 6418 1 1593 799 289 65 37 chr1 132157235 132157558 -65037874 - MLT1B LTR MaLR 0 390 59 1 1593 973 129 34 28 chr1 132157664 132157840 -65037592 - B2_Mm2 SINE B2 -18 177 1 1 1593 538 278 0 47 chr1 132157857 132158027 -65037405 + RSINE1 SINE B4 4 165 0 1 1593 394 343 120 0 chr1 132159310 132159485 -65035947 + MER20 DNA MER1_type 24 219 0 1 1593 862 242 168 16 chr1 132160703 132161006 -65034426 + Lx8 LINE L1 7047 7395 -78 1 1593 201 175 0 0 chr1 132161232 132161272 -65034160 + A-rich Low_complexity Low_complexity 1 40 0 1 1593 186 292 0 89 chr1 132161714 132161793 -65033639 + L2 LINE L2 2637 2708 -711 1 1593 22 0 0 0 chr1 132161916 132161938 -65033494 + AT_rich Low_complexity Low_complexity 1 22 0 1 1593 455 139 15 37 chr1 132162940 132163074 -65032358 + (CA)n Simple_repeat Simple_repeat 1 131 0 1 1593 1315 114 26 0 chr1 132163262 132163455 -65031977 + RLTR33 LTR ERVK 1 198 -480 1 1593 1231 171 32 5 chr1 132163613 132163831 -65031601 - URR1B DNA MER1_type -1 224 1 1 1593 370 234 78 35 chr1 132164180 132164322 -65031110 - L1MB1 LINE L1 -2 6166 6019 1 1593 451 325 76 0 chr1 132164359 132164636 -65030796 - L1MB1 LINE L1 -204 5964 5667 1 1593 932 290 95 17 chr1 132164633 132165474 -65029958 - L1MA5 LINE L1 -315 5985 5071 1 1593 2829 264 67 40 chr1 132165592 132166909 -65028523 + RMER1C Other Other 109 1331 -11 1 1593 476 298 182 5 chr1 132166975 132167184 -65028248 + MLT1D LTR MaLR 1 246 -259 2 1593 263 316 63 0 chr1 132167443 132167617 -65027815 - L1MA5 LINE L1 -4759 1308 1124 1 1593 296 308 32 24 chr1 132167716 132167839 -65027593 - L1MA5 LINE L1 -5140 927 804 1 1593 243 125 0 0 chr1 132168274 132168314 -65027118 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1593 2428 62 0 0 chr1 132168697 132169004 -65026428 + MTB LTR MaLR 1 307 -93 2 1593 1575 174 62 24 chr1 132169007 132169435 -65025997 + RMER17C LTR ERVK 16 441 -517 2 1593 800 81 0 51 chr1 132169416 132169533 -65025899 + MTB LTR MaLR 290 400 0 2 1593 245 281 135 10 chr1 132169579 132169683 -65025749 - PB1D7 SINE Alu -31 118 2 2 1593 207 0 0 0 chr1 132169958 132169981 -65025451 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 1593 320 216 10 0 chr1 132170396 132170493 -65024939 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 1593 255 372 7 7 chr1 132170495 132170633 -65024799 + (CATA)n Simple_repeat Simple_repeat 2 139 0 2 1593 304 327 0 10 chr1 132170520 132170622 -65024810 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 1593 3237 43 13 0 chr1 132172299 132172690 -65022742 - MTA_Mm LTR MaLR 0 396 1 2 1593 300 27 0 0 chr1 132172925 132172962 -65022470 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1593 279 0 0 0 chr1 132173627 132173658 -65021774 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1593 2993 39 8 0 chr1 132174075 132174471 -65020961 + L1Md_F3 LINE L1 6205 6584 0 2 1593 265 228 139 0 chr1 132174516 132174617 -65020815 + Lx7 LINE L1 7578 7692 -4 2 1593 379 291 75 62 chr1 132175933 132176160 -65019272 + RLTR14 LTR ERV1 153 382 0 2 1593 942 301 56 32 chr1 132176445 132176785 -65018647 - MLT2B4 LTR ERVL -208 348 1 2 1593 748 314 47 58 chr1 132176875 132177524 -65017908 - RLTR18B LTR ERVK -9 503 5 2 1593 337 325 88 13 chr1 132177616 132177775 -65017657 + LTR82B Low_complexity ERVL 635 805 -25 2 1593 227 287 106 49 chr1 132180031 132180295 -65015137 - L1MEg LINE L1 -4024 2176 1898 2 1593 28 61 0 0 chr1 132180439 132180488 -65014944 + AT_rich Low_complexity Low_complexity 1 49 0 2 1593 812 277 163 30 chr1 132180502 132180766 -65014666 - ORR1E LTR MaLR -60 299 1 2 1593 343 291 121 21 chr1 132181219 132181505 -65013927 - L1MEg LINE L1 -4532 1668 1390 2 1593 989 274 132 3 chr1 132181537 132181863 -65013569 - ORR1D2 LTR MaLR 0 370 3 2 1593 1643 228 165 28 chr1 132182272 132182837 -65012595 + RLTR26 LTR ERVK 1 642 0 2 1593 25 0 0 0 chr1 132183065 132183090 -65012342 + AT_rich Low_complexity Low_complexity 1 25 0 2 1593 269 338 70 6 chr1 132183183 132183341 -65012091 + HERVL40-int LTR ERVL 3773 3940 -1590 2 1593 291 54 0 0 chr1 132183632 132183669 -65011763 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1593 730 361 89 21 chr1 132185250 132185734 -65009698 + LTR40a LTR ERVL 1 517 -2 2 1593 218 116 23 0 chr1 132185994 132186037 -65009395 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2 1593 22 0 0 0 chr1 132186391 132186413 -65009019 + AT_rich Low_complexity Low_complexity 1 22 0 2 1593 2073 195 129 19 chr1 132186730 132187201 -65008231 + MT2A LTR ERVL 1 523 -10 2 1593 219 160 53 11 chr1 132187810 132187905 -65007527 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1593 2207 147 40 5 chr1 132187941 132188317 -65007115 + RLTR12B LTR ERVK 138 526 -2 2 1593 3052 147 41 62 chr1 132188493 132188822 -65006610 + RMER4B LTR ERVK 17 315 -270 2 1593 276 30 0 0 chr1 132188822 132188855 -65006577 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2 1593 453 36 0 0 chr1 132188855 132188909 -65006523 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 2 1593 3052 147 41 62 chr1 132188909 132189159 -65006273 + RMER4B LTR ERVK 316 584 -1 2 1593 1467 243 95 14 chr1 132189625 132190139 -65005293 + Lx7 LINE L1 5754 6309 -1387 2 1593 3581 203 50 71 chr1 132190181 132191109 -65004323 - RMER13B LTR ERVK 0 908 1 2 1593 1524 184 39 62 chr1 132191321 132191684 -65003748 + ORR1B1 LTR MaLR 1 386 -8 2 1593 1154 297 57 42 chr1 132191710 132192476 -65002956 + L1M4 LINE L1 4057 4834 -1312 2 1593 241 352 88 40 chr1 132193042 132193190 -65002242 - MIR SINE MIR -90 172 18 2 1593 1502 236 136 6 chr1 132193521 132193874 -65001558 + MTD LTR MaLR 21 419 0 2 1593 23 0 0 0 chr1 132193941 132193964 -65001468 + AT_rich Low_complexity Low_complexity 1 23 0 2 1593 216 0 0 0 chr1 132195504 132195528 -64999904 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1593 694 277 122 32 chr1 132195539 132196006 -64999426 - L1MC1 LINE L1 -453 5880 5372 2 1593 355 280 90 15 chr1 132197667 132197801 -64997631 + MIRb SINE MIR 111 254 -14 2 1593 1117 70 0 7 chr1 132197908 132198051 -64997381 + B1_Mus1 SINE Alu 2 143 -5 2 1593 445 327 126 17 chr1 132199642 132199944 -64995488 - MER74B LTR ERVL -207 415 81 2 1593 362 259 132 18 chr1 132200094 132200208 -64995224 + RMER20A LTR ERVK 11 137 -490 2 1593 631 226 40 5 chr1 132200237 132200445 -64994987 + RMER20A LTR ERVK 224 440 -187 2 1593 602 298 0 81 chr1 132201770 132201853 -64993579 + B4A SINE B4 4 71 -221 2 1593 213 255 61 148 chr1 132201853 132201968 -64993464 + PB1 SINE Alu 1 105 -22 2 1593 273 231 0 0 chr1 132202003 132202055 -64993377 + RSINE1 SINE B4 78 129 -36 2 1593 360 77 0 0 chr1 132202060 132202112 -64993320 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1593 315 0 0 0 chr1 132202112 132202147 -64993285 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1593 449 253 9 127 chr1 132202759 132202972 -64992460 + MER53 DNA hAT 1 188 -5 2 1593 405 317 115 85 chr1 132203094 132203459 -64991973 + MLT1K LTR MaLR 212 587 -8 2 1593 509 274 124 44 chr1 132203629 132203854 -64991578 + Lx8 LINE L1 7172 7414 -59 2 1593 4694 67 2 8 chr1 132203912 132204503 -64990929 + LTRIS_Mus LTR ERV1 1 587 0 2 1593 1737 165 54 92 chr1 132205121 132205489 -64989943 + ORR1B1 LTR MaLR 41 394 0 2 1593 1155 148 66 9 chr1 132205727 132205939 -64989493 + URR1B DNA MER1_type 1 224 -1 2 1593 422 295 108 0 chr1 132206494 132206633 -64988799 + MER96 DNA hAT 22 175 0 2 1593 610 254 196 65 chr1 132207226 132207361 -64988071 - Lx9 LINE L1 -20 7624 7502 2 1593 189 0 0 0 chr1 132207361 132207382 -64988050 + (TATG)n Simple_repeat Simple_repeat 4 24 0 2 1593 610 254 196 65 chr1 132207382 132207742 -64987690 - Lx9 LINE L1 -143 7501 7065 2 1593 333 197 0 0 chr1 132207747 132207813 -64987619 + L1_Mur2 LINE L1 4479 4544 -1333 2 1593 2352 157 5 0 chr1 132208026 132208402 -64987030 - ORR1C1 LTR MaLR 0 378 1 2 1593 243 0 0 0 chr1 132208714 132208741 -64986691 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1593 6926 8 0 0 chr1 132208762 132209529 -64985903 - L1Md_T LINE L1 0 6582 5816 2 1593 526 329 69 47 chr1 132210902 132211297 -64984135 - MLT1A0 LTR MaLR -20 388 1 2 1593 526 366 58 16 chr1 132212852 132213109 -64982323 + LTR16C LTR ERVL 239 478 -60 2 1593 25 31 0 0 chr1 132214585 132214617 -64980815 + AT_rich Low_complexity Low_complexity 1 32 0 2 1593 265 389 18 0 chr1 132214747 132214860 -64980572 - MLT1B LTR MaLR -79 311 197 2 1593 322 264 102 46 chr1 132214904 132215071 -64980361 - MLT1B LTR MaLR -181 193 28 2 1593 36266 40 0 3 chr1 132215220 132221513 -64973919 - L1Md_T LINE L1 -1 6584 211 2 1593 31 0 0 0 chr1 132221685 132221716 -64973716 + AT_rich Low_complexity Low_complexity 1 31 0 2 1593 389 356 148 43 chr1 132221930 132222321 -64973111 - MER68 LTR ERVL 0 563 132 2 1593 461 278 96 19 chr1 132222328 132222537 -64972895 - L1MA10 LINE L1 -2 6332 6108 2 1593 706 31 21 0 chr1 132222811 132222908 -64972524 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1593 392 237 138 40 chr1 132223107 132223294 -64972138 - L1MA10 LINE L1 -293 5998 5799 2 1593 4258 148 42 14 chr1 132223330 132224113 -64971319 + RLTR22_Mur LTR ERVK 1 805 -1043 2 1593 237 355 9 61 chr1 132224421 132224535 -64970897 + RMER12 LTR ERVK 1215 1322 0 2 1593 318 306 106 50 chr1 132224587 132224728 -64970704 - MER68 LTR ERVL -414 149 1 2 1593 399 277 20 0 chr1 132224955 132225056 -64970376 + MTEa-int LTR MaLR 2 104 -1476 2 1593 501 17 0 0 chr1 132225094 132225152 -64970280 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 2 1593 1208 61 7 7 chr1 132225152 132225290 -64970142 - B1_Mus1 SINE Alu -9 139 1 2 1593 2863 235 132 27 chr1 132225290 132226096 -64969336 + RMER19B LTR ERVK 13 902 0 2 1593 4201 303 82 30 chr1 132226096 132227495 -64967937 + MTEa-int LTR MaLR 109 1580 0 2 1593 1168 259 97 26 chr1 132227495 132227847 -64967585 + MTEa LTR MaLR 1 377 -2 2 1593 315 0 0 0 chr1 132227893 132227928 -64967504 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1593 396 0 0 0 chr1 132230325 132230369 -64965063 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 1593 314 365 152 22 chr1 132230728 132231053 -64964379 - L1MEc LINE L1 -5644 756 386 2 1593 648 0 0 0 chr1 132231053 132231125 -64964307 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1593 314 365 152 22 chr1 132231125 132231245 -64964187 - L1MEc LINE L1 -6015 385 255 2 1593 393 283 88 14 chr1 132231254 132231401 -64964031 + MLT2B2 LTR ERVL 9 166 -349 2 1593 1955 285 28 14 chr1 132231423 132232069 -64963363 + Lx6 LINE L1 6221 7096 -364 2 1593 285 183 0 155 chr1 132232069 132232140 -64963292 - RMER5 LTR ERV1 -83 451 392 2 1593 453 116 0 0 chr1 132232141 132232210 -64963222 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 2 1593 1235 61 0 7 chr1 132232210 132232358 -64963074 - B1_Mus1 SINE Alu -1 147 1 2 1593 1188 268 70 20 chr1 132232380 132232738 -64962694 - RMER5 LTR ERV1 -158 376 1 2 1593 21 0 0 0 chr1 132232830 132232851 -64962581 + AT_rich Low_complexity Low_complexity 1 21 0 2 1593 564 168 0 0 chr1 132233221 132233346 -64962086 + CT-rich Low_complexity Low_complexity 3 127 0 2 1593 1476 158 209 9 chr1 132234259 132234579 -64960853 - ORR1C2 LTR MaLR 0 384 1 2 1593 1436 280 65 67 chr1 132235897 132236615 -64958817 - L1MA4A LINE L1 -258 6039 5323 2 1593 584 303 156 50 chr1 132236625 132237223 -64958209 + L1M2 LINE L1 2589 3249 -2894 2 1593 2891 209 53 57 chr1 132237247 132237961 -64957471 + RMER1C Other Other 630 1340 -2 2 1593 841 291 108 34 chr1 132237954 132238592 -64956840 + L1M2 LINE L1 3252 3935 -2211 2 1593 997 230 93 82 chr1 132238754 132238924 -64956508 - ORR1E LTR MaLR 0 359 186 2 1593 936 0 0 0 chr1 132238924 132239028 -64956404 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 2 1593 997 230 93 82 chr1 132239028 132239212 -64956220 - ORR1E LTR MaLR -174 185 1 2 1593 309 338 43 43 chr1 132239576 132239740 -64955692 - L3 LINE CR1 -67 4422 4259 2 1593 1381 48 6 0 chr1 132240103 132240271 -64955161 - L1_Mus1 LINE L1 0 6567 6399 3 1593 1540 22 0 13 chr1 132240712 132240938 -64954494 + (GAA)n Simple_repeat Simple_repeat 1 223 0 3 1593 486 0 0 0 chr1 132241033 132241087 -64954345 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 3 1593 911 103 0 0 chr1 132241087 132241213 -64954219 - B1_Mus2 SINE Alu -12 135 10 3 1593 249 33 0 0 chr1 132241214 132241244 -64954188 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 3 1593 251 204 0 0 chr1 132242560 132242604 -64952828 + B3A SINE B2 3 46 -152 3 1593 6308 89 0 2 chr1 132242604 132243444 -64951988 + L1_Mus1 LINE L1 5730 6567 0 3 1593 528 252 25 74 chr1 132243465 132243628 -64951804 + B3A SINE B2 41 195 -3 3 1593 262 115 0 32 chr1 132244104 132244167 -64951265 + (CCCCCA)n Simple_repeat Simple_repeat 5 65 0 3 1593 306 421 7 21 chr1 132244746 132244889 -64950543 + MER115 DNA Tip100 156 296 -397 3 1593 225 318 108 72 chr1 132244934 132245100 -64950332 + MER115 DNA Tip100 415 586 -107 3 1593 1035 188 0 148 chr1 132245106 132245430 -64950002 - Lx4B LINE L1 0 7058 6783 3 1593 263 233 53 27 chr1 132245651 132245726 -64949706 + MTD LTR MaLR 6 82 -337 3 1593 24 0 0 0 chr1 132245776 132245800 -64949632 + AT_rich Low_complexity Low_complexity 1 24 0 3 1593 468 155 36 0 chr1 132245811 132245895 -64949537 + MTC LTR MaLR 335 421 0 3 1593 292 358 55 0 chr1 132246181 132246290 -64949142 - MLT1D LTR MaLR -343 162 48 3 1593 318 98 0 0 chr1 132247096 132247147 -64948285 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1593 1052 283 45 14 chr1 132247707 132247994 -64947438 + Lx9 LINE L1 6597 6892 -752 3 1593 4222 157 175 27 chr1 132247994 132248065 -64947367 + RLTR25B LTR ERVK 1 72 -956 3 1593 270 0 0 0 chr1 132248065 132248095 -64947337 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1593 4222 157 175 27 chr1 132248095 132248573 -64946859 + RLTR25B LTR ERVK 73 608 -420 3 1593 297 0 0 0 chr1 132248573 132248606 -64946826 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1593 4222 157 175 27 chr1 132248606 132248950 -64946482 + RLTR25B LTR ERVK 609 1027 -1 3 1593 1750 294 61 31 chr1 132248955 132249569 -64945863 + Lx9 LINE L1 6889 7518 -126 3 1593 396 0 0 0 chr1 132249569 132249613 -64945819 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1593 1750 294 61 31 chr1 132249613 132249706 -64945726 + Lx9 LINE L1 7519 7616 -28 3 1593 611 13 13 0 chr1 132249795 132249871 -64945561 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 3 1593 4274 45 4 89 chr1 132249871 132250431 -64945001 - RLTR1B LTR ERV1 0 512 1 3 1593 481 336 58 86 chr1 132250495 132250808 -64944624 - MLT1D LTR MaLR -180 325 22 3 1593 739 223 30 75 chr1 132251320 132251519 -64943913 + B3A SINE B2 9 198 0 3 1594 1180 171 107 16 chr1 132252062 132252305 -64943127 - MTD LTR MaLR -154 265 1 3 1594 228 372 81 16 chr1 132252825 132252948 -64942484 + RSINE1 SINE B4 3 133 -32 3 1594 306 0 0 0 chr1 132252950 132252984 -64942448 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1594 218 208 56 19 chr1 132253136 132253190 -64942242 + MIRm SINE MIR 86 141 -135 3 1594 21 0 0 0 chr1 132253633 132253654 -64941778 + AT_rich Low_complexity Low_complexity 1 21 0 3 1594 1269 181 23 71 chr1 132253686 132253996 -64941436 - Lx7 LINE L1 0 7696 7402 3 1594 1037 189 266 14 chr1 132253996 132254285 -64941147 - MT2A LTR ERVL -105 428 67 3 1594 2178 99 13 9 chr1 132254340 132254657 -64940775 - ORR1A4 LTR MaLR -8 321 4 3 1594 317 211 104 13 chr1 132254657 132254726 -64940706 - MT2A LTR ERVL -457 76 1 3 1594 464 227 0 0 chr1 132254726 132254814 -64940618 - Lx6 LINE L1 -314 7146 7059 3 1594 356 309 98 5 chr1 132254852 132255081 -64940351 - L1MA6 LINE L1 -28 6263 6003 3 1594 26 0 0 0 chr1 132255558 132255584 -64939848 + AT_rich Low_complexity Low_complexity 1 26 0 3 1594 2425 79 0 0 chr1 132256052 132256369 -64939063 - ORR1A2 LTR MaLR -8 319 3 3 1594 1615 222 76 38 chr1 132256370 132256764 -64938668 + MTD LTR MaLR 11 419 0 3 1594 521 69 0 0 chr1 132257163 132257235 -64938197 - L1Md_F2 LINE L1 -2 6580 6509 3 1594 1101 129 0 0 chr1 132257507 132257649 -64937783 + (GGA)n Simple_repeat Simple_repeat 3 144 0 3 1594 1578 11 0 0 chr1 132257649 132257829 -64937603 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1594 1101 129 0 0 chr1 132257829 132257864 -64937568 + (GGA)n Simple_repeat Simple_repeat 1 35 0 3 1594 252 0 0 0 chr1 132257864 132257892 -64937540 + (GAA)n Simple_repeat Simple_repeat 3 30 0 3 1594 733 269 105 13 chr1 132257914 132258287 -64937145 - L1M2 LINE L1 -759 5381 4975 3 1594 414 0 0 0 chr1 132258385 132258431 -64937001 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1594 533 262 0 16 chr1 132258431 132258555 -64936877 - RSINE1 SINE B4 -41 124 3 3 1594 2548 252 101 31 chr1 132258568 132259473 -64935959 - Lx6 LINE L1 0 7460 6271 3 1594 1566 256 42 98 chr1 132259475 132260241 -64935191 - L1M2 LINE L1 -1205 4938 4216 3 1594 876 279 90 87 chr1 132260237 132260426 -64935006 + L1MA9 LINE L1 5401 5596 -716 3 1594 966 240 55 0 chr1 132260426 132260626 -64934806 + B3 SINE B2 1 211 -5 3 1594 876 279 90 87 chr1 132260626 132261002 -64934430 + L1MA9 LINE L1 5597 5968 -344 3 1594 212 323 62 0 chr1 132261009 132261074 -64934358 + BC1_Mm scRNA scRNA 3 71 -81 3 1594 573 250 244 0 chr1 132261016 132261176 -64934256 + ID_B1 SINE B4 15 213 -11 3 1594 576 251 15 41 chr1 132261346 132261357 -64934075 + L1MA9 LINE L1 6057 6069 -222 3 1594 853 214 119 5 chr1 132261357 132261550 -64933882 - B3 SINE B2 -1 215 1 3 1594 576 251 15 41 chr1 132261550 132261733 -64933699 + L1MA9 LINE L1 6070 6246 -45 3 1594 284 84 17 3 chr1 132262039 132262084 -64933348 + B1_Mus1 SINE Alu 1 49 -68 3 1594 224 183 14 0 chr1 132262755 132262793 -64932639 + polypyrimidine Low_complexity Low_complexity 35 72 0 3 1594 3142 32 3 9 chr1 132262793 132263141 -64932291 + ORR1A1 LTR MaLR 1 346 0 3 1594 224 183 14 0 chr1 132263141 132263173 -64932259 + polypyrimidine Low_complexity Low_complexity 2 34 0 3 1594 212 302 87 8 chr1 132263322 132263449 -64931983 + MIRb SINE MIR 89 225 -43 3 1594 232 325 0 25 chr1 132264075 132264154 -64931278 - ID4 SINE ID -3 80 4 3 1594 759 318 5 22 chr1 132264255 132264477 -64930955 + ID_B1 SINE B4 2 219 -5 3 1594 1364 245 112 24 chr1 132264595 132265005 -64930427 - RMER5 LTR ERV1 -74 460 15 3 1594 501 17 0 0 chr1 132265813 132265871 -64929561 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1594 379 227 228 29 chr1 132266128 132266264 -64929168 + RSINE1 SINE B4 3 165 0 3 1594 796 269 157 70 chr1 132266567 132267007 -64928425 - MER54A LTR ERVL -5 896 419 3 1594 522 294 66 10 chr1 132267039 132267235 -64928197 - MER54A LTR ERVL -688 213 7 3 1594 258 105 0 0 chr1 132269244 132269282 -64926150 + (TCC)n Simple_repeat Simple_repeat 3 40 0 3 1594 307 305 42 67 chr1 132271024 132271189 -64924243 + RLTR14 LTR ERV1 222 382 0 3 1594 430 157 16 0 chr1 132271744 132271865 -64923567 + (TG)n Simple_repeat Simple_repeat 1 123 0 3 1594 247 233 39 64 chr1 132271946 132272024 -64923408 - B4A SINE B4 0 292 217 3 1594 466 229 110 0 chr1 132272120 132272229 -64923203 - MTEa-int LTR MaLR -1459 121 1 3 1594 559 275 205 13 chr1 132272231 132272538 -64922894 - MTEa LTR MaLR -2 377 12 3 1594 985 207 33 19 chr1 132272788 132272968 -64922464 + B3 SINE B2 2 186 -30 3 1594 258 106 0 0 chr1 132272968 132273015 -64922417 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 3 1594 985 207 33 19 chr1 132273015 132273046 -64922386 + B3 SINE B2 187 216 0 3 1594 580 286 22 10 chr1 132273066 132273246 -64922186 + Lx8 LINE L1 6549 6840 -804 3 1594 246 405 0 11 chr1 132273370 132273550 -64921882 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1594 213 343 9 18 chr1 132273624 132273734 -64921698 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 3 1594 654 272 96 71 chr1 132273751 132274075 -64921357 - Lx8 LINE L1 -543 6930 6599 3 1594 2942 74 85 7 chr1 132274140 132274422 -64921010 - RLTR44C LTR ERVK -31 471 168 3 1594 279 0 0 0 chr1 132274422 132274453 -64920979 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1594 2942 74 85 7 chr1 132274453 132274607 -64920825 - RLTR44C LTR ERVK -335 167 1 3 1594 752 283 82 0 chr1 132274656 132274875 -64920557 - Lx8 LINE L1 -954 6519 6283 3 1594 862 113 15 0 chr1 132274891 132275024 -64920408 + B1_Mus2 SINE Alu 11 145 -2 3 1594 261 0 0 0 chr1 132275507 132275536 -64919896 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1594 378 0 0 0 chr1 132275536 132275577 -64919855 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1594 531 252 89 21 chr1 132275822 132276057 -64919375 - L1M5 LINE L1 -2125 4021 3771 3 1594 258 241 0 0 chr1 132276274 132276353 -64919079 + CT-rich Low_complexity Low_complexity 2 80 0 3 1594 2075 132 26 7 chr1 132276489 132276794 -64918638 - RLTR10E LTR ERVK 0 311 1 3 1594 11555 82 8 1 chr1 132276794 132278678 -64916754 - MMERVK10C-int LTR ERVK 0 7680 5761 3 1594 15253 73 11 3 chr1 132278669 132280743 -64914689 - MMERVK10C-int LTR ERVK -1939 5642 3552 3 1594 1593 79 304 0 chr1 132280739 132280997 -64914435 - MMERVK10C-int LTR ERVK -4515 3066 2730 3 1594 4054 69 18 9 chr1 132280995 132281551 -64913881 - MMERVK10C-int LTR ERVK -5136 2445 1885 3 1594 376 185 123 0 chr1 132281542 132281623 -64913809 - MMERVK10C-int LTR ERVK -5109 1028 938 3 1594 1345 172 207 34 chr1 132281628 132282043 -64913389 - MMERVK10C-int LTR ERVK -4587 819 333 3 1594 2858 185 70 68 chr1 132282058 132282905 -64912527 - MMERVK10C-int LTR ERVK -6733 848 1 3 1594 1913 162 3 3 chr1 132282905 132283215 -64912217 - RLTR10E LTR ERVK 0 311 2 3 1594 428 282 64 0 chr1 132283216 132283326 -64912106 + B1F SINE Alu 12 128 -21 3 1594 245 27 54 0 chr1 132283335 132283372 -64912060 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1594 754 251 105 0 chr1 132283689 132283860 -64911572 - ID_B1 SINE B4 -12 212 24 3 1594 361 354 85 35 chr1 132284337 132284796 -64910636 - L1MC4 LINE L1 -445 7597 7116 3 1594 325 312 103 28 chr1 132284805 132284950 -64910482 - L1MC4 LINE L1 -1007 6875 6720 3 1594 465 297 159 24 chr1 132284993 132285236 -64910196 + MLT2B2 LTR ERVL 9 284 -231 3 1594 253 354 12 8 chr1 132285589 132285692 -64909740 + B1F SINE Alu 1 104 -43 3 1594 312 27 0 0 chr1 132287060 132287097 -64908335 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1594 288 0 0 0 chr1 132287124 132287156 -64908276 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 3 1594 670 277 147 0 chr1 132287162 132287339 -64908093 - ID_B1 SINE B4 -20 204 2 3 1594 1053 112 0 0 chr1 132287779 132287922 -64907510 - B1_Mus1 SINE Alu -5 143 1 3 1594 1582 303 120 6 chr1 132288799 132289623 -64905809 + Lx8 LINE L1 6137 7054 -419 3 1594 866 121 32 6 chr1 132289631 132289789 -64905643 - L1_Mus3 LINE L1 -6 6632 6471 3 1594 968 69 152 0 chr1 132289789 132289934 -64905498 + L1_Mus3 LINE L1 6134 6300 -338 3 1594 427 256 31 8 chr1 132290098 132290228 -64905204 + Lx8 LINE L1 7205 7337 -136 3 1594 570 250 74 35 chr1 132290317 132290520 -64904912 + B3 SINE B2 2 212 -4 3 1594 4776 48 28 0 chr1 132290913 132291512 -64903920 - L1Md_F3 LINE L1 0 6584 5969 3 1594 7385 33 0 3 chr1 132291512 132292464 -64902968 + L1_Mm LINE L1 3097 4045 -1838 3 1594 253 277 43 108 chr1 132292726 132292740 -64902692 - B4A SINE B4 -129 163 112 3 1594 284 242 0 83 chr1 132292740 132292812 -64902620 - PB1D10 SINE Alu -49 68 3 3 1594 878 79 19 1 chr1 132293141 132293278 -64902154 + B1_Mm SINE Alu 1 140 -9 4 1594 318 26 0 0 chr1 132293278 132293317 -64902115 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1594 323 312 8 92 chr1 132293690 132293810 -64901622 - MER2 DNA MER2_type -2 343 234 4 1594 710 262 81 30 chr1 132293849 132294046 -64901386 + B3 SINE B2 10 216 0 4 1594 194 286 0 0 chr1 132295804 132295853 -64899579 + L2b LINE L2 3320 3368 -7 4 1594 310 371 32 0 chr1 132296090 132296214 -64899218 - MIRb SINE MIR -116 152 25 4 1594 267 278 112 47 chr1 132296298 132296468 -64898964 + MER106B DNA MER1_type 874 1054 -5 4 1594 30733 78 7 36 chr1 132296677 132301990 -64893442 + L1Md_F3 LINE L1 446 5585 -298 4 1594 8164 33 5 0 chr1 132301992 132302970 -64892462 + L1Md_F3 LINE L1 5588 6570 -14 4 1594 4461 62 2 3 chr1 132302971 132303572 -64891860 + L1Md_F3 LINE L1 4987 5586 -297 4 1594 7913 53 0 1 chr1 132303572 132304557 -64890875 + L1Md_F3 LINE L1 5587 6570 -14 4 1594 3388 54 76 9 chr1 132305550 132305995 -64889437 + MT2C_Mm LTR ERVL 1 475 0 4 1594 22 0 0 0 chr1 132306616 132306638 -64888794 + AT_rich Low_complexity Low_complexity 1 22 0 4 1594 215 122 0 20 chr1 132306639 132306689 -64888743 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1594 331 287 17 17 chr1 132306901 132307018 -64888414 + PB1D10 SINE Alu 1 117 0 4 1594 238 262 88 0 chr1 132308426 132308506 -64886926 + Lx8 LINE L1 5820 5906 -1567 4 1594 519 60 0 0 chr1 132308525 132308592 -64886840 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1594 201 176 0 0 chr1 132309644 132309678 -64885754 + T-rich Low_complexity Low_complexity 1 34 0 4 1594 475 224 176 0 chr1 132310361 132310486 -64884946 - B1_Mus1 SINE Alu -1 147 1 4 1594 409 290 88 47 chr1 132311564 132311734 -64883698 + B4 SINE B4 65 241 -51 4 1594 250 306 0 0 chr1 132311747 132311819 -64883613 + (CATA)n Simple_repeat Simple_repeat 1 72 0 4 1594 276 246 0 14 chr1 132311818 132311888 -64883544 + GA-rich Low_complexity Low_complexity 2 70 0 4 1594 428 79 13 13 chr1 132312103 132312213 -64883219 + L1Md_F2 LINE L1 6491 6582 0 4 1594 896 71 7 48 chr1 132312251 132312398 -64883034 + B2_Mm2 SINE B2 53 193 -2 4 1594 306 0 0 0 chr1 132312660 132312694 -64882738 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1594 963 274 11 28 chr1 132315118 132315400 -64880032 + B4 SINE B4 2 278 -14 4 1594 305 346 14 50 chr1 132315453 132315593 -64879839 + ID_B1 SINE B4 1 135 -89 4 1594 27 0 0 0 chr1 132316497 132316524 -64878908 + AT_rich Low_complexity Low_complexity 1 27 0 4 1594 243 304 27 81 chr1 132316885 132316996 -64878436 + MIRc SINE MIR 127 231 -37 4 1594 1161 118 0 0 chr1 132317475 132317653 -64877779 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 1594 1018 83 14 0 chr1 132317697 132317842 -64877590 + B1_Mus1 SINE Alu 2 148 0 4 1594 223 49 49 0 chr1 132317842 132317883 -64877549 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 4 1594 441 167 39 0 chr1 132317913 132317991 -64877441 + PB1 SINE Alu 21 101 -26 4 1594 1107 49 28 0 chr1 132320101 132320244 -64875188 + B1_Mus1 SINE Alu 2 148 0 4 1594 195 69 0 0 chr1 132320246 132320275 -64875157 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 4 1594 183 298 44 77 chr1 132320618 132320709 -64874723 - MIRm SINE MIR -90 186 99 4 1594 850 256 57 35 chr1 132320745 132320771 -64874661 - B4 SINE B4 0 292 270 4 1594 855 129 0 0 chr1 132320771 132320926 -64874506 + (TG)n Simple_repeat Simple_repeat 2 156 0 4 1594 850 256 57 35 chr1 132320926 132321182 -64874250 - B4 SINE B4 -23 269 4 4 1594 2291 172 23 0 chr1 132321796 132322239 -64873193 + RLTR11B LTR ERVK 1 453 0 4 1594 207 0 0 0 chr1 132323133 132323156 -64872276 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1594 789 243 64 20 chr1 132323205 132323503 -64871929 - Lx7 LINE L1 -1692 6004 5694 4 1594 229 408 64 44 chr1 132323907 132324158 -64871274 + MIRb SINE MIR 4 259 -9 4 1594 754 251 105 0 chr1 132325116 132325287 -64870145 - ID_B1 SINE B4 -12 212 24 4 1594 347 351 67 60 chr1 132325764 132326243 -64869189 - L1MC4 LINE L1 -445 7597 7116 4 1594 7407 89 9 13 chr1 132326243 132326855 -64868577 - RLTR13D5 LTR ERVK 0 1023 414 4 1594 3204 46 13 0 chr1 132326855 132327246 -64868186 + MTA_Mm LTR MaLR 1 396 0 4 1594 7407 89 9 13 chr1 132327246 132327660 -64867772 - RLTR13D5 LTR ERVK -610 413 1 4 1594 1113 162 0 0 chr1 132327700 132327891 -64867541 - ETnERV3-int LTR ERVK -57 5751 5561 4 1594 580 89 56 0 chr1 132327928 132328018 -64867414 - ETnERV2-int LTR ERVK -1120 4286 4192 4 1594 3261 53 81 0 chr1 132328020 132328451 -64866981 + MT2C_Mm LTR ERVL 10 475 0 4 1594 3508 121 113 74 chr1 132328451 132329666 -64865766 - ETnERV2-int LTR ERVK -1811 3595 2864 4 1594 744 158 0 0 chr1 132329668 132329801 -64865631 + (TA)n Simple_repeat Simple_repeat 1 133 0 4 1594 189 0 0 0 chr1 132329812 132329833 -64865599 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1594 760 171 19 122 chr1 132329833 132330046 -64865386 - ETnERV2-int LTR ERVK -2546 2860 2670 4 1594 494 270 74 7 chr1 132330072 132330221 -64865211 + RMER16 LTR ERVK 69 227 -306 4 1594 9434 171 70 58 chr1 132330221 132332667 -64862765 - ETnERV2-int LTR ERVK -4884 2522 48 4 1594 7144 93 16 2 chr1 132332711 132333707 -64861725 - RLTR13D5 LTR ERVK -13 1010 1 4 1594 273 305 123 15 chr1 132333735 132333865 -64861567 - L1MC4 LINE L1 -1019 6863 6720 4 1594 856 296 51 18 chr1 132333907 132334182 -64861250 + MLT2B2 LTR ERVL 1 284 -231 4 1594 239 366 29 19 chr1 132334554 132334657 -64860775 + PB1D10 SINE Alu 1 104 -43 4 1594 294 106 0 0 chr1 132336022 132336069 -64859363 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 1594 363 23 0 0 chr1 132336099 132336143 -64859289 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 4 1594 422 281 51 26 chr1 132336146 132336263 -64859169 - B1F1 SINE Alu -15 134 15 4 1594 571 270 82 5 chr1 132336263 132336318 -64859114 - ID_B1 SINE B4 -15 209 16 4 1594 1950 290 121 7 chr1 132337648 132338472 -64856960 + Lx8 LINE L1 6137 7054 -419 4 1594 930 90 57 6 chr1 132338480 132338637 -64856795 - L1_Mus3 LINE L1 -3 6635 6471 4 1594 980 90 152 0 chr1 132338637 132338782 -64856650 + L1_Mus3 LINE L1 6134 6300 -338 4 1594 435 303 58 55 chr1 132338828 132339121 -64856311 + Lx8 LINE L1 7108 7401 -72 4 1594 664 229 80 45 chr1 132339147 132339348 -64856084 + B3 SINE B2 2 209 -7 4 1594 318 300 16 91 chr1 132339534 132339655 -64855777 - MER2 DNA MER2_type 0 345 234 4 1594 667 264 95 21 chr1 132339681 132339871 -64855561 + B3 SINE B2 2 205 -11 4 1594 1225 56 0 0 chr1 132341786 132341928 -64853504 + B1_Mus2 SINE Alu 2 143 -4 4 1594 387 0 0 0 chr1 132341929 132341972 -64853460 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1594 244 357 54 35 chr1 132342109 132342280 -64853152 - MIRb SINE MIR -80 196 25 4 1594 260 271 43 74 chr1 132342375 132342538 -64852894 + MER106B DNA MER1_type 897 1054 -5 4 1594 22 35 0 0 chr1 132343116 132343145 -64852287 + AT_rich Low_complexity Low_complexity 1 29 0 4 1594 203 211 0 19 chr1 132344352 132344405 -64851027 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1594 375 287 17 17 chr1 132344599 132344716 -64850716 + PB1D10 SINE Alu 1 117 0 4 1594 1655 53 0 0 chr1 132346283 132346471 -64848961 + B2_Mm1t SINE B2 1 188 -5 4 1594 365 276 0 0 chr1 132346671 132346758 -64848674 + Lx8 LINE L1 5820 5906 -1567 4 1594 240 184 0 0 chr1 132346779 132346828 -64848604 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1594 523 224 176 0 chr1 132348687 132348812 -64846620 - B1_Mus1 SINE Alu -1 147 1 4 1594 403 290 88 47 chr1 132349902 132350072 -64845360 + B4 SINE B4 65 241 -51 4 1594 264 292 0 0 chr1 132350085 132350157 -64845275 + (CATA)n Simple_repeat Simple_repeat 1 72 0 4 1594 276 246 0 14 chr1 132350156 132350226 -64845206 + GA-rich Low_complexity Low_complexity 2 70 0 4 1594 201 94 0 0 chr1 132350531 132350563 -64844869 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1594 180 0 0 0 chr1 132350596 132350616 -64844816 + (CAA)n Simple_repeat Simple_repeat 1 20 0 4 1594 2070 129 3 9 chr1 132350820 132351141 -64844291 + ORR1A2 LTR MaLR 1 319 -8 4 1594 462 179 33 74 chr1 132351297 132351418 -64844014 + RMER1C Other Other 1114 1229 -113 4 1594 490 199 8 60 chr1 132351434 132351613 -64843819 + RMER1C Other Other 1228 1342 0 4 1594 1276 91 10 31 chr1 132352607 132352799 -64842633 - B2_Mm2 SINE B2 -6 189 2 4 1594 1083 280 7 21 chr1 132355100 132355381 -64840051 + B4 SINE B4 2 278 -14 4 1594 248 376 14 50 chr1 132355434 132355574 -64839858 + ID_B1 SINE B4 1 135 -89 4 1594 27 0 0 0 chr1 132356478 132356505 -64838927 + AT_rich Low_complexity Low_complexity 1 27 0 4 1594 23 54 0 0 chr1 132357439 132357476 -64837956 + AT_rich Low_complexity Low_complexity 1 37 0 4 1594 633 119 8 25 chr1 132357484 132357605 -64837827 + A-rich Low_complexity Low_complexity 3 121 0 4 1594 433 179 39 0 chr1 132357616 132357694 -64837738 + PB1 SINE Alu 21 101 -26 4 1594 227 333 0 0 chr1 132359157 132359217 -64836215 + (CGG)n Simple_repeat Simple_repeat 2 61 0 4 1594 366 246 167 0 chr1 132360688 132360802 -64834630 + B1F SINE Alu 10 142 -7 4 1594 1071 92 7 0 chr1 132361151 132361292 -64834140 + B1_Mus1 SINE Alu 3 144 -4 4 1594 269 26 0 26 chr1 132361292 132361331 -64834101 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 1594 881 102 0 49 chr1 132361634 132361778 -64833654 + MTA_Mm LTR MaLR 1 137 -259 4 1594 1116 22 8 0 chr1 132361770 132361904 -64833528 + MTA_Mm LTR MaLR 262 396 0 4 1594 1017 254 49 42 chr1 132362086 132362114 -64833318 - B4 SINE B4 0 292 270 4 1594 297 0 0 0 chr1 132362114 132362147 -64833285 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1594 1017 254 49 42 chr1 132362147 132362405 -64833027 - B4 SINE B4 -23 269 4 4 1594 363 324 62 40 chr1 132365042 132365219 -64830213 - HAL1 LINE L1 -1554 953 773 4 1594 2144 97 0 0 chr1 132365531 132365830 -64829602 + ORR1A2 LTR MaLR 2 300 -27 4 1594 297 0 0 0 chr1 132366804 132366837 -64828595 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1594 490 340 86 78 chr1 132367455 132367669 -64827763 - Charlie24 DNA MER1_type -1322 1128 909 4 1594 1315 106 44 0 chr1 132367669 132367849 -64827583 - B2_Mm2 SINE B2 -6 189 2 4 1594 490 340 86 78 chr1 132367849 132368055 -64827377 - Charlie24 DNA MER1_type -1542 908 705 4 1594 180 0 0 0 chr1 132368794 132368814 -64826618 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1594 181 328 0 0 chr1 132368814 132368875 -64826557 + L2a LINE L2 1671 1731 -1688 5 1594 333 0 0 0 chr1 132368938 132368975 -64826457 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1594 396 266 10 69 chr1 132368977 132369040 -64826392 - PB1D10 SINE Alu -22 95 38 5 1594 626 262 78 160 chr1 132369040 132369496 -64825936 + RLTR16 LTR ERVK 1 411 -94 5 1594 360 0 0 0 chr1 132369496 132369536 -64825896 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1594 626 262 78 160 chr1 132369536 132369629 -64825803 + RLTR16 LTR ERVK 412 504 -1 5 1594 396 266 10 69 chr1 132369629 132369666 -64825766 - PB1D10 SINE Alu -80 37 1 5 1594 3323 114 113 4 chr1 132369969 132370499 -64824933 - RLTR1D LTR ERV1 -17 588 1 5 1594 201 121 0 0 chr1 132370676 132370709 -64824723 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1594 191 312 42 65 chr1 132370716 132370884 -64824548 + L2a LINE L2 2479 2642 -777 5 1594 371 330 124 58 chr1 132371080 132371562 -64823870 + L2a LINE L2 2913 3426 0 5 1594 251 301 31 41 chr1 132371609 132371706 -64823726 + MER102a DNA MER1_type 128 223 -107 5 1594 27 0 0 0 chr1 132372062 132372089 -64823343 + AT_rich Low_complexity Low_complexity 1 27 0 5 1594 782 273 95 10 chr1 132372227 132372559 -64822873 - Lx7 LINE L1 -366 5934 5586 5 1594 665 296 138 24 chr1 132372965 132373336 -64822096 - Lx9 LINE L1 -24 7620 7208 5 1594 274 342 45 0 chr1 132373332 132373443 -64821989 + Lx9 LINE L1 6854 6969 -675 5 1594 2497 291 67 22 chr1 132373433 132374258 -64821174 - Lx9 LINE L1 -434 7210 6174 5 1594 360 0 0 0 chr1 132374258 132374298 -64821134 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1594 444 37 0 0 chr1 132374298 132374351 -64821081 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1594 6851 263 94 60 chr1 132374351 132376682 -64818750 - Lx9 LINE L1 -1523 6173 3728 5 1594 2374 156 17 0 chr1 132376682 132377041 -64818391 - ORR1B2 LTR MaLR -2 365 1 5 1594 6851 255 90 62 chr1 132377041 132377298 -64818134 - Lx9 LINE L1 -2120 3727 3440 5 1594 345 100 0 0 chr1 132377298 132377348 -64818084 + (TGG)n Simple_repeat Simple_repeat 1 50 0 5 1594 6851 255 90 62 chr1 132377348 132377449 -64817983 - Lx9 LINE L1 -2408 3439 3339 5 1594 180 0 0 0 chr1 132377449 132377469 -64817963 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1594 6851 255 90 62 chr1 132377469 132377912 -64817520 - Lx9 LINE L1 -2509 3338 2890 5 1594 1200 41 0 7 chr1 132377919 132378067 -64817365 - L1Md_F2 LINE L1 -13 6569 6423 5 1594 482 274 75 53 chr1 132378071 132378337 -64817095 - L1_Mur3 LINE L1 -2935 2945 2674 5 1594 826 161 74 6 chr1 132378629 132378791 -64816641 - Lx6 LINE L1 -1 7459 7287 5 1594 447 19 0 0 chr1 132378791 132378843 -64816589 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 5 1594 3202 176 22 28 chr1 132378845 132379422 -64816010 - Lx6 LINE L1 -210 7250 6677 5 1594 1913 105 40 64 chr1 132379422 132379749 -64815683 + ORR1A2 LTR MaLR 1 319 -8 5 1594 1643 202 82 3 chr1 132379754 132380082 -64815350 - Lx6 LINE L1 -780 6680 6327 5 1594 3159 246 25 28 chr1 132380125 132380995 -64814437 - Lx9 LINE L1 -3163 2684 1817 5 1594 903 128 121 6 chr1 132380999 132381156 -64814276 + URR1B DNA MER1_type 5 179 -46 5 1594 465 219 9 45 chr1 132381145 132381255 -64814177 - MTD LTR MaLR -306 113 8 5 1594 1466 269 59 45 chr1 132381574 132382167 -64813265 - Lx7 LINE L1 -2 7471 6853 5 1594 25 0 0 0 chr1 132382416 132382441 -64812991 + AT_rich Low_complexity Low_complexity 1 25 0 5 1595 206 230 40 0 chr1 132384667 132384741 -64810691 + T-rich Low_complexity Low_complexity 3 79 0 5 1595 21 0 0 0 chr1 132385168 132385189 -64810243 + AT_rich Low_complexity Low_complexity 1 21 0 5 1595 25 0 0 0 chr1 132385327 132385352 -64810080 + AT_rich Low_complexity Low_complexity 1 25 0 5 1595 330 87 0 0 chr1 132386044 132386090 -64809342 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 5 1595 189 74 0 0 chr1 132386095 132386122 -64809310 + (TTAG)n Simple_repeat Simple_repeat 3 29 0 5 1595 703 165 78 16 chr1 132386124 132386253 -64809179 - B1_Mur3 SINE Alu -1 148 12 5 1595 198 0 0 0 chr1 132386253 132386275 -64809157 + (CAG)n Simple_repeat Simple_repeat 1 22 0 5 1595 249 33 0 0 chr1 132386413 132386443 -64808989 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5 1595 207 0 0 0 chr1 132386949 132386972 -64808460 + (CAA)n Simple_repeat Simple_repeat 1 23 0 5 1595 432 0 0 0 chr1 132387223 132387271 -64808161 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1595 36016 37 0 1 chr1 132387669 132393296 -64802136 + L1Md_T LINE L1 1 5589 -297 5 1595 9143 6 0 0 chr1 132393296 132394292 -64801140 + L1Md_T LINE L1 5590 6585 0 5 1595 741 178 0 0 chr1 132394901 132395030 -64800402 + RMER10A LTR ERVL 1 129 -313 5 1595 342 0 0 0 chr1 132395036 132395074 -64800358 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1595 436 262 60 16 chr1 132395085 132395267 -64800165 + RMER10A LTR ERVL 209 398 0 5 1595 480 261 83 57 chr1 132395641 132395905 -64799527 + L1MA9 LINE L1 4952 5222 -918 5 1595 30 45 0 0 chr1 132395922 132395966 -64799466 + AT_rich Low_complexity Low_complexity 1 44 0 5 1595 954 172 92 229 chr1 132396065 132396480 -64798952 - ORR1C1 LTR MaLR -2 376 19 5 1595 1327 176 4 15 chr1 132396482 132396747 -64798685 - ORR1C1-int LTR MaLR -290 1219 958 5 1595 507 143 22 11 chr1 132396745 132396837 -64798595 - ORR1C1 LTR MaLR -285 93 1 5 1595 1315 292 85 18 chr1 132396840 132397498 -64797934 + L1MA9 LINE L1 5336 6037 -275 5 1595 381 249 117 56 chr1 132398432 132398611 -64796821 - MER3 DNA MER1_type -14 195 6 5 1595 396 0 0 0 chr1 132398738 132398782 -64796650 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1595 744 163 113 0 chr1 132398782 132398923 -64796509 - RLTR28 LTR ERVL -24 457 301 5 1595 857 115 70 6 chr1 132398951 132399108 -64796324 - B2_Mm2 SINE B2 0 195 29 5 1595 336 163 81 11 chr1 132399115 132399202 -64796230 - RLTR28 LTR ERVL -168 313 221 5 1595 1160 139 117 12 chr1 132399253 132399493 -64795939 - RLTR28 LTR ERVL -256 268 4 5 1595 214 308 0 0 chr1 132399618 132399670 -64795762 + ID_B1 SINE B4 81 132 -92 5 1595 478 293 42 49 chr1 132400009 132400202 -64795230 - Lx8 LINE L1 -669 6804 6599 5 1595 213 39 0 0 chr1 132400316 132400342 -64795090 + (ATG)n Simple_repeat Simple_repeat 1 26 0 5 1595 274 299 50 50 chr1 132400447 132400588 -64794844 + L2a LINE L2 3271 3411 -15 5 1595 1106 234 62 78 chr1 132400897 132401281 -64794151 + MTEb LTR MaLR 1 378 -1 5 1595 314 319 38 101 chr1 132402283 132402492 -64792940 + B4A SINE B4 1 196 -96 5 1595 434 302 0 56 chr1 132402545 132402671 -64792761 + RSINE1 SINE B4 43 161 -4 5 1595 24 53 0 0 chr1 132402720 132402758 -64792674 + AT_rich Low_complexity Low_complexity 1 38 0 5 1595 1134 71 0 0 chr1 132402760 132402901 -64792531 + B1_Mus1 SINE Alu 1 141 -7 5 1595 369 0 0 0 chr1 132402905 132402946 -64792486 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 1595 247 214 0 0 chr1 132402965 132403007 -64792425 + B4A SINE B4 239 280 -12 5 1595 1920 142 91 25 chr1 132403459 132403864 -64791568 + RMER15 LTR ERVL 3 434 -141 5 1595 606 63 0 0 chr1 132403892 132403971 -64791461 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 5 1595 336 361 122 24 chr1 132403971 132404226 -64791206 + RCHARR1 DNA MER1_type 80 359 -615 5 1595 258 278 30 0 chr1 132404285 132404418 -64791014 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 1595 352 223 105 28 chr1 132404418 132404561 -64790871 + RCHARR1 DNA MER1_type 355 508 -466 5 1595 180 0 0 0 chr1 132406443 132406463 -64788969 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1595 1765 227 94 59 chr1 132406464 132406615 -64788817 + Lx8 LINE L1 6200 6341 -1132 5 1595 2382 87 19 12 chr1 132406615 132406940 -64788492 - ORR1A2 LTR MaLR 0 327 1 5 1595 1765 227 94 59 chr1 132406940 132407330 -64788102 + Lx8 LINE L1 6342 6760 -713 5 1595 2016 249 32 30 chr1 132407506 132407873 -64787559 + Lx6 LINE L1 6548 7280 -180 5 1595 1866 173 134 5 chr1 132407873 132408245 -64787187 + MTC LTR MaLR 2 421 0 5 1595 2016 244 29 31 chr1 132408245 132408403 -64787029 + Lx6 LINE L1 7281 7431 -29 5 1595 571 293 97 36 chr1 132408413 132408661 -64786771 - Lx8 LINE L1 -179 7294 7032 5 1595 263 300 34 54 chr1 132408741 132408889 -64786543 - MER57A-int LTR ERV1 -1953 4234 4090 5 1595 495 33 0 0 chr1 132409052 132409113 -64786319 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1595 243 0 0 0 chr1 132409113 132409139 -64786293 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1595 360 0 0 0 chr1 132410430 132410470 -64784962 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1595 207 0 0 0 chr1 132410640 132410663 -64784769 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1595 683 153 27 133 chr1 132410671 132410859 -64784573 - Lx4A LINE L1 0 7058 6891 5 1595 387 244 0 0 chr1 132411481 132411596 -64783836 + C-rich Low_complexity Low_complexity 1 115 0 5 1595 718 245 67 50 chr1 132411609 132411952 -64783480 + RLTR15 LTR ERVK 1 349 -10 5 1595 593 306 145 39 chr1 132411961 132412298 -64783134 - Lx6 LINE L1 -92 6958 6586 5 1595 284 70 23 0 chr1 132412298 132412341 -64783091 + (TCC)n Simple_repeat Simple_repeat 2 45 0 5 1595 2495 231 104 12 chr1 132412417 132413154 -64782278 - Lx6 LINE L1 -874 6586 5564 5 1595 1256 241 29 29 chr1 132413933 132414309 -64781123 - RMER5 LTR ERV1 -156 378 3 5 1595 8280 29 0 0 chr1 132416492 132417421 -64778011 - RLTR13B3 LTR ERVK 0 929 1 5 1595 470 220 60 0 chr1 132417459 132417559 -64777873 + Lx9 LINE L1 7083 7188 -456 5 1595 411 130 0 0 chr1 132417572 132417649 -64777783 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1595 2078 115 28 81 chr1 132418136 132418532 -64776900 - RLTR14 LTR ERV1 -7 375 1 5 1595 1128 56 21 0 chr1 132418632 132418776 -64776656 + B1_Mus1 SINE Alu 2 148 0 5 1595 820 289 52 26 chr1 132418828 132419134 -64776298 + MTE2b LTR MaLR 1 314 -65 5 1595 266 0 29 0 chr1 132419137 132419171 -64776261 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1595 370 281 204 21 chr1 132420046 132420232 -64775200 - Lx9 LINE L1 -320 7324 7105 5 1595 2251 177 59 0 chr1 132420459 132420900 -64774532 - Lx9 LINE L1 0 7644 7178 5 1595 734 231 0 13 chr1 132421124 132421273 -64774159 + B1_Mur1 SINE Alu 2 148 -1 5 1595 321 346 10 0 chr1 132421286 132421387 -64774045 + B1F SINE Alu 6 107 -42 5 1595 740 122 8 0 chr1 132421681 132421804 -64773628 + (TC)n Simple_repeat Simple_repeat 2 125 0 5 1595 1847 205 63 12 chr1 132422486 132422915 -64772517 + RLTR18 LTR ERVK 1 451 -165 5 1595 2053 125 32 0 chr1 132422919 132423231 -64772201 - ORR1A3 LTR MaLR -4 322 1 5 1595 942 219 101 20 chr1 132423233 132423480 -64771952 - RLTR18 LTR ERVK -349 267 1 5 1595 439 308 20 20 chr1 132423650 132423796 -64771636 + RLTR18 LTR ERVK 453 598 -18 5 1595 9052 249 70 86 chr1 132423800 132427361 -64768071 + MYSERV-int LTR ERVK 335 6544 -6 5 1595 1923 185 37 22 chr1 132427363 132427767 -64767665 + RLTR11A2 LTR ERVK 1 410 -117 5 1595 10995 156 12 69 chr1 132427768 132430020 -64765412 + L1_Mur1 LINE L1 1849 3972 -1914 5 1595 414 101 0 0 chr1 132430028 132430097 -64765335 + Lx LINE L1 6585 6653 -1 5 1595 22 0 0 0 chr1 132430103 132430125 -64765307 + AT_rich Low_complexity Low_complexity 1 22 0 5 1595 303 289 43 72 chr1 132430560 132430698 -64764734 + RLTR14 LTR ERV1 224 357 -25 5 1595 2897 36 0 3 chr1 132430881 132431219 -64764213 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1595 26527 28 26 12 chr1 132431219 132434333 -64761099 + IAPEz-int LTR ERVK 8 3165 -3316 6 1595 9973 27 2 5 chr1 132434322 132435463 -64759969 + IAPEz-int LTR ERVK 5345 6481 0 6 1595 2908 33 0 3 chr1 132435463 132435801 -64759631 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1595 2527 160 65 23 chr1 132436306 132436627 -64758805 - RLTR20A LTR ERVK 0 541 219 6 1595 315 0 0 0 chr1 132436627 132436662 -64758770 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 6 1595 2527 160 65 23 chr1 132436662 132436859 -64758573 - RLTR20A LTR ERVK -323 218 1 6 1595 1435 125 4 12 chr1 132437176 132437419 -64758013 + RLTR14 LTR ERV1 1 241 -141 6 1595 453 280 9 18 chr1 132437432 132437526 -64757906 + RSINE1 SINE B4 46 140 -25 6 1595 243 0 0 0 chr1 132437526 132437553 -64757879 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1595 453 280 9 18 chr1 132437553 132437567 -64757865 + RSINE1 SINE B4 141 153 -12 6 1595 23 33 0 0 chr1 132437592 132437622 -64757810 + AT_rich Low_complexity Low_complexity 1 30 0 6 1595 576 130 0 0 chr1 132437848 132437948 -64757484 + L1_Mus3 LINE L1 6536 6635 -3 6 1595 25 31 0 0 chr1 132437948 132437980 -64757452 + AT_rich Low_complexity Low_complexity 1 32 0 6 1595 1356 74 0 87 chr1 132437982 132438190 -64757242 + B2_Mm1a SINE B2 1 190 -3 6 1595 2486 174 60 12 chr1 132438529 132439030 -64756402 + RMER5 LTR ERV1 1 525 -9 6 1595 1258 285 33 49 chr1 132439046 132439499 -64755933 - L1_Rod LINE L1 -87 5760 5315 6 1595 339 301 67 31 chr1 132439501 132439724 -64755708 - L1_Rod LINE L1 -729 5118 4888 6 1595 435 284 43 0 chr1 132439728 132439869 -64755563 - L1_Rod LINE L1 -3395 2452 2306 6 1595 1738 299 136 40 chr1 132439874 132441083 -64754349 + Lx8 LINE L1 3991 5276 -604 6 1595 414 0 0 0 chr1 132441083 132441129 -64754303 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1595 1330 296 150 32 chr1 132441129 132441532 -64753900 + Lx8 LINE L1 5277 5756 -124 6 1595 2094 152 17 112 chr1 132441532 132441637 -64753795 + RLTR23 LTR ERV1 1 92 -338 6 1595 191 61 0 29 chr1 132441637 132441671 -64753761 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1595 2094 152 17 112 chr1 132441671 132442040 -64753392 + RLTR23 LTR ERV1 93 430 0 6 1595 1330 296 150 32 chr1 132442040 132442164 -64753268 + Lx8 LINE L1 5757 5870 -10 6 1595 221 75 25 0 chr1 132442234 132442274 -64753158 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 1595 884 240 35 43 chr1 132442368 132442625 -64752807 + RLTR18 LTR ERVK 14 268 -348 6 1595 1318 237 15 25 chr1 132442690 132443015 -64752417 + RLTR18B LTR ERVK 189 510 -2 6 1595 309 26 0 0 chr1 132443089 132443127 -64752305 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1595 1858 306 151 16 chr1 132443198 132444168 -64751264 + Lx8 LINE L1 6196 7295 -178 6 1595 204 40 0 0 chr1 132444195 132444220 -64751212 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 6 1595 271 264 18 54 chr1 132444334 132444446 -64750986 - MER96B DNA hAT -307 110 3 6 1595 830 83 0 8 chr1 132445165 132445286 -64750146 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 6 1595 1367 81 17 22 chr1 132445286 132445464 -64749968 - B2_Mm2 SINE B2 -17 178 2 6 1595 420 90 0 49 chr1 132445467 132445549 -64749883 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 6 1595 336 312 56 28 chr1 132445777 132445919 -64749513 - B3A SINE B2 -1 197 52 6 1595 769 171 44 89 chr1 132445923 132446103 -64749329 - RLTR28B LTR ERVL -3 478 307 6 1595 910 50 0 8 chr1 132446102 132446222 -64749210 + B1_Mm SINE Alu 28 146 -1 6 1595 294 37 35 53 chr1 132446222 132446279 -64749153 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 6 1595 1536 102 55 29 chr1 132446279 132446551 -64748881 - RLTR28B LTR ERVL -181 300 22 6 1595 305 130 37 0 chr1 132446557 132446611 -64748821 - B3A SINE B2 -142 56 1 6 1595 511 272 76 5 chr1 132446751 132446936 -64748496 + Lx8 LINE L1 6408 6605 -868 6 1595 263 28 28 0 chr1 132448168 132448204 -64747228 + (TCCCC)n Simple_repeat Simple_repeat 2 38 0 6 1595 252 0 0 0 chr1 132448275 132448303 -64747129 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1595 207 0 0 0 chr1 132449476 132449499 -64745933 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1595 287 283 116 19 chr1 132449611 132449827 -64745605 + L1_Mur3 LINE L1 2506 2742 -3138 6 1595 2090 193 93 21 chr1 132449832 132450303 -64745129 + RLTR16 LTR ERVK 1 505 0 6 1595 1739 310 96 33 chr1 132450342 132451576 -64743856 + L1_Mur3 LINE L1 2783 4094 -1786 6 1595 812 212 0 31 chr1 132451569 132451730 -64743702 - Lx5 LINE L1 -260 6790 6635 6 1595 1342 209 34 31 chr1 132451718 132451988 -64743444 + Lx5 LINE L1 6757 7031 -19 6 1595 516 32 0 0 chr1 132451988 132452050 -64743382 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 6 1595 1342 209 34 31 chr1 132452050 132452070 -64743362 + Lx5 LINE L1 7032 7048 -2 6 1595 235 273 118 22 chr1 132452082 132452217 -64743215 + L1_Mur3 LINE L1 4149 4296 -1584 6 1595 189 74 0 0 chr1 132452528 132452555 -64742877 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1595 40151 27 1 12 chr1 132453665 132459884 -64735548 - L1Md_A LINE L1 -1 6581 440 6 1595 69 33 0 0 chr1 132460016 132460106 -64735326 + AT_rich Low_complexity Low_complexity 1 90 0 6 1595 756 154 31 15 chr1 132460222 132460550 -64734882 + (CA)n Simple_repeat Simple_repeat 1 333 0 6 1595 1152 309 61 18 chr1 132460566 132461057 -64734375 - Lx9 LINE L1 -127 7517 7006 6 1595 225 274 103 13 chr1 132461821 132461976 -64733456 + L1M5 LINE L1 4127 4295 -1851 6 1595 571 103 10 10 chr1 132462354 132462452 -64732980 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 6 1595 1039 208 33 24 chr1 132462585 132462797 -64732635 - B3 SINE B2 -2 214 1 6 1595 248 376 32 0 chr1 132462802 132462895 -64732537 - B1F SINE Alu -3 146 51 6 1595 219 214 0 0 chr1 132463654 132463696 -64731736 - PB1D7 SINE Alu -5 115 74 6 1595 255 279 43 75 chr1 132463852 132463945 -64731487 - B1F1 SINE Alu -50 99 10 6 1595 1161 203 5 0 chr1 132463973 132464180 -64731252 + B3 SINE B2 2 209 -7 6 1595 207 0 0 0 chr1 132464240 132464263 -64731169 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 6 1595 567 269 8 0 chr1 132464642 132464761 -64730671 - RSINE1 SINE B4 -43 122 3 6 1595 529 160 30 0 chr1 132465030 132465130 -64730302 - B2_Mm2 SINE B2 -3 192 90 6 1595 1609 116 35 4 chr1 132465174 132465433 -64729999 - RLTR20A LTR ERVK -101 440 174 6 1595 1361 115 51 4 chr1 132465434 132465669 -64729763 - RLTR20A LTR ERVK -294 247 2 6 1595 425 245 75 0 chr1 132467241 132467335 -64728097 - RSINE1 SINE B4 -17 148 48 6 1595 552 162 18 54 chr1 132467921 132468032 -64727400 + MT2B2 LTR ERVL 333 439 -145 6 1595 4638 94 29 2 chr1 132468669 132469254 -64726178 - MT2B LTR ERVL 0 601 1 6 1595 557 307 0 124 chr1 132469433 132469619 -64725813 + RSINE1 SINE B4 3 165 0 6 1595 204 40 0 0 chr1 132469639 132469664 -64725768 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1595 1154 235 90 10 chr1 132470140 132470441 -64724991 - ORR1B2 LTR MaLR -2 365 41 6 1595 922 185 6 0 chr1 132470466 132470628 -64724804 + URR1B DNA MER1_type 1 163 -62 6 1595 443 202 36 0 chr1 132470651 132470735 -64724697 - ORR1B2 LTR MaLR -287 87 1 6 1595 251 281 30 40 chr1 132470738 132470838 -64724594 + L1M5 LINE L1 5036 5134 -1012 6 1595 228 297 62 85 chr1 132471095 132471152 -64724280 - MER2 DNA MER2_type -219 126 76 6 1595 745 144 113 8 chr1 132471152 132471285 -64724147 - B1_Mur3 SINE Alu 0 149 3 6 1595 229 297 62 85 chr1 132471285 132471356 -64724076 - MER2 DNA MER2_type -270 75 1 6 1595 407 303 43 24 chr1 132471412 132471677 -64723755 + L1M5 LINE L1 5196 5466 -707 6 1595 253 282 59 50 chr1 132471771 132471915 -64723517 + L1M5 LINE L1 5601 5744 -429 6 1595 563 299 41 0 chr1 132471998 132472145 -64723287 + B3 SINE B2 27 179 -37 6 1595 1321 222 150 6 chr1 132472231 132472262 -64723170 - MTD LTR MaLR 0 419 383 6 1595 324 0 0 0 chr1 132472262 132472298 -64723134 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1595 1321 222 150 6 chr1 132472298 132472606 -64722826 - MTD LTR MaLR -37 382 31 6 1595 1201 76 11 0 chr1 132472762 132473037 -64722395 + (TC)n Simple_repeat Simple_repeat 1 277 0 6 1595 189 0 0 0 chr1 132473037 132473057 -64722375 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1595 1032 46 0 0 chr1 132473858 132473988 -64721444 + (TG)n Simple_repeat Simple_repeat 2 131 0 6 1595 212 355 24 37 chr1 132474013 132474095 -64721337 - B4 SINE B4 -129 163 83 6 1595 720 58 36 20 chr1 132475492 132475747 -64719685 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 6 1595 477 283 81 118 chr1 132476260 132476592 -64718840 - MTE-int LTR MaLR -39 1541 1222 6 1595 592 285 181 19 chr1 132477032 132477513 -64717919 - L1_Rod LINE L1 -13 5834 5283 6 1595 207 0 0 0 chr1 132478118 132478141 -64717291 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1595 458 75 15 0 chr1 132478426 132478493 -64716939 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1595 30 69 0 0 chr1 132480373 132480431 -64715001 + AT_rich Low_complexity Low_complexity 1 58 0 6 1595 1485 210 95 6 chr1 132480613 132480939 -64714493 - ORR1D1 LTR MaLR -12 362 8 6 1595 308 322 129 89 chr1 132480950 132481253 -64714179 + L1M3e LINE L1 62 376 -6654 6 1595 261 328 102 0 chr1 132481473 132481601 -64713831 + L1M3e LINE L1 234 374 -6656 6 1595 1302 257 172 18 chr1 132482373 132482990 -64712442 + L1M3e LINE L1 4528 5239 -1864 6 1595 421 270 88 51 chr1 132482990 132483206 -64712226 + MTE2b LTR MaLR 1 215 -204 6 1595 2610 154 82 28 chr1 132483249 132483749 -64711683 + RLTR11A2 LTR ERVK 1 527 0 6 1595 1060 292 166 34 chr1 132483849 132484989 -64710443 + MTE-int LTR MaLR 5 1462 -118 6 1595 561 142 106 0 chr1 132485508 132485621 -64709811 - Lx9 LINE L1 0 7644 7520 6 1595 357 24 0 0 chr1 132485622 132485664 -64709768 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1595 550 130 0 44 chr1 132485664 132485801 -64709631 + GA-rich Low_complexity Low_complexity 2 132 0 6 1595 1716 197 74 0 chr1 132485809 132486160 -64709272 - Lx9 LINE L1 -250 7394 7018 6 1595 1244 55 0 0 chr1 132486944 132487090 -64708342 - B1_Mm SINE Alu 0 147 2 6 1595 1276 55 0 0 chr1 132487339 132487485 -64707947 + B1_Mus1 SINE Alu 1 146 -2 6 1595 21 36 0 0 chr1 132487561 132487589 -64707843 + AT_rich Low_complexity Low_complexity 1 28 0 6 1595 1190 68 0 7 chr1 132489539 132489686 -64705746 - B1_Mm SINE Alu 0 147 2 6 1595 761 306 81 20 chr1 132489743 132489901 -64705531 + RMER5 LTR ERV1 218 393 -141 6 1595 8781 31 1 0 chr1 132489901 132490868 -64704564 + L1Md_T LINE L1 5614 6581 -1 6 1595 761 306 81 20 chr1 132490868 132491006 -64704426 + RMER5 LTR ERV1 394 532 -2 6 1595 327 283 37 75 chr1 132491006 132491092 -64704340 - RSINE1 SINE B4 -81 84 3 6 1595 3794 115 23 0 chr1 132491127 132491658 -64703774 - Lx2A1 LINE L1 0 7008 6466 6 1595 5077 178 21 78 chr1 132491659 132492178 -64703254 + L1_Mm LINE L1 4198 4721 -1162 6 1595 601 40 0 0 chr1 132492178 132492252 -64703180 - U6 snRNA snRNA -32 75 2 6 1595 5077 178 21 78 chr1 132492252 132492765 -64702667 + L1_Mm LINE L1 4722 5240 -643 6 1595 573 276 45 0 chr1 132492936 132493070 -64702362 + RSINE1 SINE B4 2 141 -24 6 1595 804 272 137 22 chr1 132493519 132493930 -64701502 - RMER5 LTR ERV1 -17 517 59 6 1595 203 57 0 79 chr1 132494041 132494079 -64701353 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1595 279 286 93 57 chr1 132494731 132494924 -64700508 + RMER15 LTR ERVL 334 533 -42 6 1595 283 129 16 31 chr1 132496374 132496438 -64698994 + CT-rich Low_complexity Low_complexity 3 65 0 7 1595 5647 187 15 21 chr1 132496477 132498582 -64696850 + L1Md_F LINE L1 99 1205 -5411 7 1595 10969 53 0 0 chr1 132498588 132500000 -64695432 + L1Md_F LINE L1 1170 2581 -3302 7 1595 24580 21 0 0 chr1 132500000 132503005 -64692427 + L1Md_T LINE L1 2582 5586 -297 1 1595 8079 53 0 0 chr1 132503005 132504001 -64691431 + L1Md_T LINE L1 5587 6582 0 1 1595 235 45 22 43 chr1 132505576 132505622 -64689810 + (TTTTTG)n Simple_repeat Simple_repeat 6 50 0 2 1595 1088 89 7 0 chr1 132505622 132505768 -64689664 - B1_Mus1 SINE Alu 0 148 2 3 1595 337 196 43 0 chr1 132506286 132506378 -64689054 + L1M5 LINE L1 5350 5445 -795 4 1595 356 131 0 104 chr1 132506416 132506493 -64688939 + RLTR11A2 LTR ERVK 1 69 -458 5 1595 2469 220 51 12 chr1 132506503 132507166 -64688266 + MYSERV-int LTR ERVK 5857 6545 -5 6 1595 1302 177 21 8 chr1 132507170 132507409 -64688023 + RLTR11A2 LTR ERVK 1 242 -285 6 1595 813 152 51 0 chr1 132507419 132507557 -64687875 + ORR1D1 LTR MaLR 227 371 -3 7 1595 355 229 96 78 chr1 132507560 132507726 -64687706 + L1MA4 LINE L1 4582 4750 -1393 8 1595 201 171 0 0 chr1 132507784 132507819 -64687613 + A-rich Low_complexity Low_complexity 1 35 0 9 1595 338 288 118 55 chr1 132507820 132508150 -64687282 + L1MA4 LINE L1 4875 5225 -918 8 1595 1005 301 65 22 chr1 132508204 132508745 -64686687 + L1MA4 LINE L1 5353 5916 -384 8 1595 417 39 0 0 chr1 132508784 132508835 -64686597 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1595 270 0 0 0 chr1 132508835 132508865 -64686567 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1595 22 0 0 0 chr1 132508924 132508946 -64686486 + AT_rich Low_complexity Low_complexity 1 22 0 1 1595 279 0 0 0 chr1 132509570 132509601 -64685831 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1595 364 248 66 72 chr1 132509606 132509758 -64685674 + L1MD1 LINE L1 5131 5281 -865 1 1595 400 304 94 29 chr1 132509913 132510430 -64685002 + L1MD1 LINE L1 5471 6021 -221 1 1595 638 112 41 0 chr1 132510456 132510554 -64684878 - URR1B DNA MER1_type -55 170 69 1 1595 578 328 85 44 chr1 132510734 132511053 -64684379 + ORR1E LTR MaLR 18 349 -10 1 1595 432 0 0 0 chr1 132511065 132511113 -64684319 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 199 3449 287 80 83 chr1 132511905 132513849 -64681583 + Lx8 LINE L1 5504 7472 -1 1 1596 1195 49 0 0 chr1 132514149 132514292 -64681140 + B1_Mus1 SINE Alu 1 143 -5 1 1596 920 80 0 69 chr1 132514317 132514506 -64680926 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 2 1596 340 265 128 96 chr1 132514558 132514746 -64680686 - B3A SINE B2 -4 194 1 2 1596 456 19 0 0 chr1 132516678 132516731 -64678701 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1596 6056 190 38 7 chr1 132517092 132517476 -64677956 + L1_Mur1 LINE L1 869 1259 -5725 2 1596 186 43 0 0 chr1 132517476 132517499 -64677933 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1596 6056 172 30 22 chr1 132517499 132517705 -64677727 + L1_Mur1 LINE L1 1260 1481 -4396 2 1596 243 0 0 0 chr1 132517705 132517732 -64677700 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2 1596 6056 172 30 22 chr1 132517732 132518861 -64676571 + L1_Mur1 LINE L1 1482 2605 -3272 2 1596 5875 155 37 29 chr1 132518856 132519458 -64675974 + Lx4B LINE L1 5720 6331 -727 2 1596 2209 70 236 6 chr1 132519458 132519789 -64675643 - MTB_Mm LTR MaLR 0 407 1 2 1596 5875 155 37 29 chr1 132519789 132520338 -64675094 + Lx4B LINE L1 6332 6881 -177 2 1596 293 250 191 32 chr1 132520357 132520514 -64674918 + L1MA4 LINE L1 5694 5875 -425 2 1596 1284 258 78 9 chr1 132520738 132521164 -64674268 + Lx7 LINE L1 6805 7259 -437 2 1596 7284 94 11 2 chr1 132521161 132522599 -64672833 - L1_Mus3 LINE L1 -5 6633 5185 3 1596 3202 114 17 2 chr1 132522585 132523121 -64672311 + L1_Mm LINE L1 3466 4009 -1874 3 1596 716 108 0 8 chr1 132523258 132523380 -64672052 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1596 372 282 40 6 chr1 132523382 132523557 -64671875 + Lx7 LINE L1 7512 7692 -4 2 1596 585 299 26 0 chr1 132523575 132523729 -64671703 + RSINE1 SINE B4 5 162 -3 3 1596 276 118 29 14 chr1 132524313 132524382 -64671050 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 3 1596 270 0 0 0 chr1 132524449 132524479 -64670953 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1596 1089 295 48 106 chr1 132524479 132524877 -64670555 - MTE2b LTR MaLR -2 377 3 3 1596 467 250 59 22 chr1 132524877 132524992 -64670440 - Tigger5 DNA MER2_type -94 2312 2193 3 1596 709 320 8 8 chr1 132525009 132525245 -64670187 - Tigger5 DNA MER2_type -2106 300 65 3 1596 334 264 36 36 chr1 132525445 132525555 -64669877 - ID_B1 SINE B4 -34 190 81 3 1596 235 265 36 0 chr1 132525644 132525727 -64669705 - L1M5 LINE L1 -1063 5083 4998 3 1596 505 258 36 12 chr1 132526547 132526712 -64668720 + MER2 DNA MER2_type 83 251 -94 4 1596 1567 267 50 33 chr1 132526735 132527251 -64668181 - RMER5 LTR ERV1 -9 525 1 4 1596 1694 240 71 102 chr1 132527298 132527928 -64667504 - RMER19C LTR ERVK 0 611 1 4 1596 6014 69 1 10 chr1 132528318 132529136 -64666296 + RLTR22_Mus LTR ERVK 1 811 -997 4 1596 1112 123 40 106 chr1 132529411 132529638 -64665794 + RLTR22_Mus LTR ERVK 1546 1757 -51 4 1596 464 297 18 9 chr1 132529640 132529752 -64665680 + B3 SINE B2 97 209 -7 4 1596 1058 18 58 0 chr1 132530111 132530389 -64665043 + (GA)n Simple_repeat Simple_repeat 1 294 0 4 1596 199 204 40 20 chr1 132531075 132531125 -64664307 - MIR SINE MIR -102 160 110 4 1596 34 24 0 0 chr1 132531867 132531908 -64663524 + AT_rich Low_complexity Low_complexity 1 41 0 4 1596 215 388 10 20 chr1 132533616 132533716 -64661716 - MIRb SINE MIR -71 197 99 4 1596 798 11 0 0 chr1 132534365 132534456 -64660976 + (TC)n Simple_repeat Simple_repeat 1 91 0 4 1596 2826 274 66 27 chr1 132534574 132535450 -64659982 + Lx6 LINE L1 6495 7404 -56 5 1596 267 333 51 66 chr1 132536012 132536208 -64659224 + ORR1E LTR MaLR 5 197 -162 5 1596 267 336 14 43 chr1 132537309 132537449 -64657983 + HERV16-int LTR ERVL 1136 1271 -3725 5 1596 332 259 65 24 chr1 132537856 132538026 -64657406 - L1M2 LINE L1 -2423 3720 3544 5 1596 675 174 180 0 chr1 132538030 132538197 -64657235 - Lx4A LINE L1 -1 7057 6861 5 1596 240 243 81 0 chr1 132538961 132539035 -64656397 + MIRc SINE MIR 86 165 -103 5 1596 398 271 83 9 chr1 132539739 132539847 -64655585 + B4 SINE B4 6 121 -171 5 1596 211 333 0 57 chr1 132539915 132539985 -64655447 + PB1D9 SINE Alu 1 66 -54 5 1596 273 322 22 11 chr1 132540005 132540096 -64655336 + RSINE1 SINE B4 73 164 -1 5 1596 193 217 0 24 chr1 132540096 132540181 -64655251 + (CATA)n Simple_repeat Simple_repeat 1 83 0 5 1596 333 0 0 0 chr1 132540373 132540410 -64655022 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1596 447 246 18 18 chr1 132540910 132541022 -64654410 - MTE2a LTR MaLR -266 113 2 6 1596 349 191 72 14 chr1 132541252 132541321 -64654111 + RSINE1 SINE B4 14 86 -79 6 1596 2611 232 100 5 chr1 132541374 132542096 -64653336 + Lx5 LINE L1 5588 6594 -866 6 1596 1502 281 42 16 chr1 132542114 132542664 -64652768 + Lx6 LINE L1 6506 7448 -12 6 1596 801 284 14 21 chr1 132542649 132542937 -64652495 + L1_Mur3 LINE L1 3696 3981 -1899 6 1596 1370 220 73 50 chr1 132542952 132543292 -64652140 - RLTR18B LTR ERVK -6 506 159 6 1596 1179 213 22 9 chr1 132543275 132543502 -64651930 - RLTR18B LTR ERVK -280 232 3 6 1596 649 263 6 134 chr1 132543504 132543670 -64651762 + L1M2 LINE L1 4015 4175 -1968 6 1596 1272 86 35 0 chr1 132543670 132543844 -64651588 + B2_Mm2 SINE B2 2 181 -14 6 1596 919 86 7 7 chr1 132543850 132543990 -64651442 + (GAA)n Simple_repeat Simple_repeat 2 141 0 6 1596 649 263 6 134 chr1 132543990 132544159 -64651273 + L1M2 LINE L1 4176 4313 -1830 6 1596 536 44 0 0 chr1 132545347 132545415 -64650017 - ORR1A2 LTR MaLR 0 346 279 7 1596 8671 144 90 38 chr1 132545413 132547095 -64648337 - ORR1A2-int LTR MaLR -192 1771 1 7 1596 1883 133 36 60 chr1 132547095 132547430 -64648002 - ORR1A2 LTR MaLR 0 327 1 7 1596 633 280 63 26 chr1 132547610 132547782 -64647650 + B3A SINE B2 1 181 -17 7 1596 624 14 0 0 chr1 132547782 132547855 -64647577 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1596 633 280 63 26 chr1 132547855 132547873 -64647559 + B3A SINE B2 182 198 0 7 1596 608 278 14 43 chr1 132547911 132548050 -64647382 + RSINE1 SINE B4 31 165 0 7 1596 235 241 20 112 chr1 132548052 132548150 -64647282 - RLTR22_Mur LTR ERVK -476 1372 1284 7 1596 315 331 25 21 chr1 132548152 132548259 -64647173 + PB1D10 SINE Alu 10 119 -1 7 1596 227 318 27 27 chr1 132548280 132548390 -64647042 + HAL1b LINE L1 986 1095 -914 7 1596 250 279 112 38 chr1 132548752 132548912 -64646520 + L1MC LINE L1 5704 5875 -2007 7 1596 647 241 59 55 chr1 132548948 132549185 -64646247 + Lx8 LINE L1 7228 7465 -8 7 1596 668 248 15 0 chr1 132549236 132549369 -64646063 + B1_Mur1 SINE Alu 1 135 -14 7 1596 232 254 0 0 chr1 132549400 132549467 -64645965 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 1596 201 116 0 44 chr1 132549690 132549735 -64645697 + T-rich Low_complexity Low_complexity 6 48 0 8 1596 437 0 19 0 chr1 132550229 132550282 -64645150 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1596 21 36 0 0 chr1 132550389 132550417 -64645015 + AT_rich Low_complexity Low_complexity 1 28 0 8 1596 318 271 27 45 chr1 132550456 132550568 -64644864 + RMER12 LTR ERVK 739 848 -474 8 1596 1415 60 22 0 chr1 132550693 132550876 -64644556 - B2_Mm2 SINE B2 -7 188 2 8 1596 225 211 0 0 chr1 132550884 132550941 -64644491 + (TTA)n Simple_repeat Simple_repeat 3 59 0 8 1596 282 250 82 16 chr1 132550954 132551015 -64644417 - RSINE1 SINE B4 -7 158 94 8 1596 7035 65 18 14 chr1 132551096 132552371 -64643061 + L1_Mus2 LINE L1 5288 6566 0 8 1596 226 186 23 0 chr1 132553032 132553075 -64642357 + PB1D10 SINE Alu 53 96 -21 8 1596 1429 62 0 49 chr1 132553174 132553378 -64642054 + B2_Mm2 SINE B2 2 195 0 9 1596 189 281 144 32 chr1 132553895 132554020 -64641412 - L2c LINE L2 -4 3383 3245 9 1596 2903 232 26 39 chr1 132554194 132555187 -64640245 - Lx7 LINE L1 -1702 5994 5023 9 1596 2195 268 78 31 chr1 132555198 132555847 -64639585 + Lx7 LINE L1 6017 6759 -714 9 1596 213 39 0 0 chr1 132555847 132555873 -64639559 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1596 2195 253 63 36 chr1 132555873 132556167 -64639265 + Lx7 LINE L1 6750 7051 -645 9 1596 2851 203 45 40 chr1 132556199 132556285 -64639147 + Lx9 LINE L1 6306 6378 -1266 9 1596 870 199 86 148 chr1 132556285 132556704 -64638728 + RLTR9C LTR ERVK 1 393 0 9 1596 5550 202 67 55 chr1 132556704 132557939 -64637493 + Lx9 LINE L1 6379 7642 -2 9 1596 435 267 150 0 chr1 132558872 132558992 -64636440 + RSINE1 SINE B4 3 140 -25 9 1596 549 243 9 0 chr1 132559053 132559160 -64636272 + PB1D10 SINE Alu 3 110 -7 9 1596 243 308 38 13 chr1 132559165 132559244 -64636188 + ID4 SINE ID 3 83 0 9 1596 6639 49 11 5 chr1 132559858 132560661 -64634771 + RLTR13C2 LTR ERVK 1 808 0 9 1596 1147 245 35 58 chr1 132560767 132561114 -64634318 + MTE2a LTR MaLR 41 379 0 1 1596 418 160 27 0 chr1 132561245 132561320 -64634112 - B1_Mur2 SINE Alu 0 149 73 1 1596 188 100 25 0 chr1 132561357 132561397 -64634035 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1596 427 269 8 10 chr1 132561729 132561857 -64633575 - MLT1A1 LTR MaLR -4 404 237 1 1596 1893 147 83 45 chr1 132562020 132562060 -64633372 + MTC LTR MaLR 1 40 -381 1 1596 1217 188 9 4 chr1 132562060 132562285 -64633147 - URR1A DNA MER1_type 0 226 1 1 1596 1893 147 83 45 chr1 132562285 132562642 -64632790 + MTC LTR MaLR 41 413 -8 1 1596 2050 114 59 0 chr1 132562726 132563033 -64632399 + ORR1A2 LTR MaLR 3 327 0 1 1596 476 314 7 0 chr1 132563478 132563615 -64631817 + ID_B1 SINE B4 80 217 -7 1 1596 699 200 0 28 chr1 132564689 132564833 -64630599 + B1_Mus1 SINE Alu 2 141 -7 1 1596 834 188 0 0 chr1 132564838 132565003 -64630429 + GA-rich Low_complexity Low_complexity 4 168 0 1 1596 609 195 0 30 chr1 132565023 132565155 -64630277 + B1_Mus2 SINE Alu 13 140 -7 1 1596 774 0 0 0 chr1 132565157 132565243 -64630189 + (GAAAA)n Simple_repeat Simple_repeat 5 90 0 1 1596 1134 0 0 0 chr1 132565246 132565372 -64630060 + (GGGAA)n Simple_repeat Simple_repeat 5 130 0 1 1596 3106 276 29 66 chr1 132565387 132566398 -64629034 - Lx7 LINE L1 -396 7300 6328 1 1596 4812 48 0 9 chr1 132568344 132568928 -64626504 + L1Md_F2 LINE L1 5980 6558 -24 1 1596 941 136 0 12 chr1 132569505 132569669 -64625763 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 1 1596 267 229 9 79 chr1 132571066 132571180 -64624252 + Lx8 LINE L1 7365 7470 -3 1 1596 1947 100 10 53 chr1 132571273 132571633 -64623799 + L1VL1 LINE L1 38 533 -5889 1 1596 14666 81 37 1 chr1 132571628 132574215 -64621217 + L1_Mus1 LINE L1 3907 6567 0 1 1596 21 71 0 0 chr1 132574329 132574371 -64621061 + AT_rich Low_complexity Low_complexity 1 42 0 1 1596 1121 226 189 25 chr1 132578201 132578519 -64616913 + ORR1D2 LTR MaLR 1 370 0 1 1596 426 258 92 0 chr1 132579082 132579202 -64616230 + ID_B1 SINE B4 2 132 -92 1 1596 1100 241 95 3 chr1 132579964 132580260 -64615172 + RMER15 LTR ERVL 253 575 0 1 1596 215 284 135 10 chr1 132580296 132580392 -64615040 + ID_B1 SINE B4 84 191 -33 1 1596 2277 78 20 61 chr1 132581046 132581389 -64614043 - ORR1A4 LTR MaLR 0 329 1 1 1596 4030 127 80 126 chr1 132581389 132582368 -64613064 - ORR1A4-int LTR MaLR 0 1963 1030 1 1596 791 44 0 9 chr1 132582369 132582483 -64612949 - B2_Mm1a SINE B2 -4 189 77 1 1596 2080 109 17 23 chr1 132582465 132582811 -64612621 + IAPEY2_LTR LTR ERVK 14 357 0 1 1596 608 104 10 0 chr1 132582811 132582893 -64612539 - B2_Mm1t SINE B2 -109 84 2 1 1596 1168 50 21 0 chr1 132582913 132583054 -64612378 - B1_Mm SINE Alu -3 144 1 1 1596 1488 133 21 51 chr1 132583055 132583388 -64612044 - ORR1A4-int LTR MaLR -923 1040 718 1 1596 736 210 54 6 chr1 132583391 132583559 -64611873 - MT2B LTR ERVL -342 259 84 1 1596 2070 197 25 67 chr1 132583421 132583975 -64611457 - ORR1A4-int LTR MaLR -1163 800 270 1 1596 201 146 0 0 chr1 132583975 132584023 -64611409 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1596 843 188 0 6 chr1 132584048 132584209 -64611223 + RLTR16 LTR ERVK 1 160 -345 1 1596 520 253 63 71 chr1 132584230 132584468 -64610964 + RLTR16 LTR ERVK 258 493 -12 1 1596 1293 95 76 9 chr1 132584551 132584727 -64610705 - ORR1A4-int LTR MaLR -1725 238 46 1 1596 261 0 0 0 chr1 132584727 132584756 -64610676 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 1596 1293 95 76 9 chr1 132584756 132584802 -64610630 - ORR1A4-int LTR MaLR -1918 45 1 1 1596 2375 93 15 3 chr1 132584802 132585127 -64610305 - ORR1A4 LTR MaLR 0 329 1 1 1596 29 0 0 0 chr1 132586814 132586843 -64608589 + AT_rich Low_complexity Low_complexity 1 29 0 1 1596 396 0 0 0 chr1 132588048 132588092 -64607340 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1596 280 283 54 54 chr1 132588253 132588365 -64607067 - MER5A1 DNA MER1_type -3 163 52 1 1596 23 0 0 0 chr1 132588793 132588816 -64606616 + AT_rich Low_complexity Low_complexity 1 23 0 1 1596 210 37 0 0 chr1 132590138 132590165 -64605267 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1596 553 62 24 12 chr1 132590167 132590249 -64605183 - B1_Mus2 SINE Alu -6 141 59 1 1596 406 219 0 24 chr1 132590496 132590580 -64604852 - ID4_ SINE ID -1 82 1 1 1596 29 0 0 0 chr1 132590622 132590651 -64604781 + AT_rich Low_complexity Low_complexity 1 29 0 1 1596 459 0 0 0 chr1 132591431 132591482 -64603950 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1596 576 200 0 0 chr1 132591572 132591692 -64603740 + (TA)n Simple_repeat Simple_repeat 1 120 0 1 1596 298 316 70 0 chr1 132591695 132591809 -64603623 + Lx9 LINE L1 7306 7427 -217 1 1596 560 286 9 80 chr1 132592393 132592606 -64602826 - B3A SINE B2 0 198 1 1 1596 420 71 0 0 chr1 132592725 132592781 -64602651 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1596 1002 159 0 0 chr1 132593934 132594168 -64601264 + (CA)n Simple_repeat Simple_repeat 1 234 0 1 1596 328 213 118 39 chr1 132595361 132595488 -64599944 + B1F SINE Alu 13 149 0 1 1596 435 276 35 0 chr1 132597821 132597937 -64597495 + PB1D7 SINE Alu 1 120 0 1 1596 736 271 38 125 chr1 132599989 132600170 -64595262 + MTEa LTR MaLR 13 167 -212 1 1596 303 284 118 0 chr1 132600170 132600272 -64595160 + PB1D7 SINE Alu 1 114 -6 1 1596 736 271 38 125 chr1 132600272 132600482 -64594950 + MTEa LTR MaLR 168 370 -9 1 1596 527 232 24 0 chr1 132600515 132600640 -64594792 + ID_B1 SINE B4 96 223 -1 1 1596 711 282 48 5 chr1 132600866 132601076 -64594356 + MER20 DNA MER1_type 1 219 0 1 1596 1448 155 0 4 chr1 132601084 132601311 -64594121 - URR1A DNA MER1_type 0 226 1 1 1596 2531 143 36 26 chr1 132601400 132601817 -64593615 + MTC LTR MaLR 1 421 0 1 1596 489 34 0 0 chr1 132602905 132602964 -64592468 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1596 183 254 32 48 chr1 132604857 132604919 -64590513 - MIRc SINE MIR -51 217 157 1 1596 681 123 0 0 chr1 132606831 132606937 -64588495 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 1596 183 261 0 0 chr1 132607313 132607359 -64588073 - MIR SINE MIR -70 138 93 1 1596 22 0 0 0 chr1 132608287 132608309 -64587123 + AT_rich Low_complexity Low_complexity 1 22 0 1 1596 27 0 0 0 chr1 132608963 132608990 -64586442 + AT_rich Low_complexity Low_complexity 1 27 0 1 1596 198 0 0 0 chr1 132608990 132609012 -64586420 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1596 354 217 60 0 chr1 132609533 132609616 -64585816 + PB1D7 SINE Alu 19 106 -14 1 1596 339 286 63 0 chr1 132609675 132609801 -64585631 - MIR SINE MIR -124 138 5 1 1596 486 265 14 14 chr1 132610400 132610538 -64584894 - ID_B1 SINE B4 -6 218 81 1 1596 290 345 0 25 chr1 132610797 132610916 -64584516 + B1F1 SINE Alu 34 149 0 1 1596 454 222 8 8 chr1 132611640 132611767 -64583665 + GA-rich Low_complexity Low_complexity 1 127 0 1 1596 216 158 0 0 chr1 132612056 132612094 -64583338 + A-rich Low_complexity Low_complexity 1 38 0 1 1596 588 65 0 0 chr1 132614745 132614822 -64580610 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1596 243 0 0 0 chr1 132614822 132614849 -64580583 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1596 665 243 15 0 chr1 132617596 132617732 -64577700 - B1F2 SINE Alu -10 139 2 1 1596 235 200 18 18 chr1 132618083 132618139 -64577293 - L2a LINE L2 -1 3425 3370 1 1596 21 0 0 0 chr1 132618459 132618480 -64576952 + AT_rich Low_complexity Low_complexity 1 21 0 1 1596 180 135 0 0 chr1 132618632 132618669 -64576763 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1596 22 0 0 0 chr1 132618716 132618738 -64576694 + AT_rich Low_complexity Low_complexity 1 22 0 1 1596 285 98 0 0 chr1 132619359 132619400 -64576032 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1596 1131 63 28 0 chr1 132619400 132619543 -64575889 - B1_Mus2 SINE Alu 0 147 1 1 1596 1083 43 18 4 chr1 132621764 132621916 -64573516 + B1_Mus1 SINE Alu 7 142 -6 1 1596 225 376 42 8 chr1 132622074 132622192 -64573240 - L1MEg LINE L1 -5815 269 148 1 1596 259 274 56 103 chr1 132622758 132622884 -64572548 - PB1D7 SINE Alu 0 120 1 1 1596 286 246 376 11 chr1 132623865 132624054 -64571378 + HAL1 LINE L1 1486 1743 -764 1 1596 207 0 0 0 chr1 132625349 132625372 -64570060 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1596 2173 106 16 3 chr1 132626068 132626389 -64569043 - ORR1A2 LTR MaLR 0 327 3 1 1596 805 279 88 53 chr1 132627072 132627390 -64568042 + MTE2b LTR MaLR 45 373 -6 1 1596 187 323 121 10 chr1 132627400 132627594 -64567838 + MIRc SINE MIR 35 256 -12 1 1596 396 0 0 0 chr1 132628014 132628058 -64567374 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1596 379 269 93 36 chr1 132629071 132629210 -64566222 + B1F2 SINE Alu 3 149 0 1 1596 290 299 55 77 chr1 132631991 132632226 -64563206 - Lx8 LINE L1 -277 7196 6967 1 1596 405 0 0 0 chr1 132633115 132633160 -64562272 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1596 201 302 64 0 chr1 132633703 132633792 -64561640 - MIR SINE MIR -164 112 17 1 1596 206 205 0 0 chr1 132634309 132634348 -64561084 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 1 1596 663 166 9 5 chr1 132634603 132634734 -64560698 + B1_Mur3 SINE Alu 3 130 -19 1 1596 187 311 40 0 chr1 132634853 132634927 -64560505 + MIRc SINE MIR 59 135 -133 1 1596 823 164 0 21 chr1 132634947 132635090 -64560342 - B1_Mur1 SINE Alu -1 148 9 1 1596 257 243 102 9 chr1 132635246 132635354 -64560078 - RMER15 LTR ERVL -159 416 299 1 1596 237 228 0 0 chr1 132635355 132635434 -64559998 + CT-rich Low_complexity Low_complexity 2 80 0 1 1596 189 74 0 0 chr1 132636250 132636277 -64559155 + (AGGGGG)n Simple_repeat Simple_repeat 2 28 0 1 1596 510 222 166 21 chr1 132636282 132636475 -64558957 + ID_B1 SINE B4 4 224 0 1 1596 237 98 0 0 chr1 132638680 132638721 -64556711 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1596 192 77 0 0 chr1 132640637 132640663 -64554769 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1596 500 246 132 42 chr1 132641357 132641501 -64553931 + B3A SINE B2 1 157 -41 1 1596 591 53 0 0 chr1 132641505 132641580 -64553852 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1596 1222 61 0 0 chr1 132643007 132643154 -64552278 + B1_Mm SINE Alu 1 147 0 2 1596 363 284 0 24 chr1 132643180 132643263 -64552169 + B4 SINE B4 81 161 -131 2 1596 207 0 0 0 chr1 132643305 132643328 -64552104 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 2 1596 302 115 0 19 chr1 132643331 132643384 -64552048 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 2 199 3463 52 70 5 chr1 132644833 132645279 -64550153 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1597 277 276 53 121 chr1 132645973 132646179 -64549253 + L1MC4a LINE L1 6061 6252 -1630 2 1597 224 214 0 0 chr1 132646232 132646274 -64549158 + B4A SINE B4 37 78 -214 2 1597 215 241 0 12 chr1 132646275 132646359 -64549073 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1597 194 277 0 18 chr1 132646423 132646537 -64548895 + (CATA)n Simple_repeat Simple_repeat 3 114 0 2 1597 209 194 0 0 chr1 132646573 132646609 -64548823 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1597 856 301 111 37 chr1 132646650 132647382 -64548050 + L1MC4a LINE L1 6379 7164 -718 2 1597 947 162 0 13 chr1 132647485 132647635 -64547797 + B1_Mur1 SINE Alu 1 148 -1 2 1597 339 25 0 0 chr1 132647733 132647773 -64547659 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1597 376 310 57 23 chr1 132647778 132647953 -64547479 + L1MC4a LINE L1 7472 7652 -230 2 1597 360 235 0 0 chr1 132648179 132648247 -64547185 - RSINE1 SINE B4 -96 69 2 2 1597 451 241 42 59 chr1 132648594 132648713 -64546719 - PB1D10 SINE Alu 0 117 1 2 1597 21 71 0 0 chr1 132648720 132648762 -64546670 + AT_rich Low_complexity Low_complexity 1 42 0 2 1597 33651 110 28 20 chr1 132649109 132650810 -64544622 + L1Md_F2 LINE L1 273 1969 -3914 2 1597 207 0 0 0 chr1 132650810 132650833 -64544599 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1597 33651 63 6 3 chr1 132650833 132654438 -64540994 + L1Md_F2 LINE L1 1970 5586 -297 2 1597 7388 79 16 9 chr1 132654438 132655426 -64540006 + L1Md_F2 LINE L1 5587 6581 -1 2 1597 28 29 0 0 chr1 132655431 132655466 -64539966 + AT_rich Low_complexity Low_complexity 1 35 0 2 1597 369 252 48 0 chr1 132657053 132657156 -64538276 + B1F SINE Alu 34 141 -8 2 1597 274 226 0 46 chr1 132657163 132657228 -64538204 + ID4_ SINE ID 2 63 -20 2 1597 252 0 0 0 chr1 132657229 132657257 -64538175 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1597 324 0 0 0 chr1 132657257 132657292 -64538140 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1597 403 301 11 57 chr1 132657356 132657532 -64537900 + MER3 DNA MER1_type 7 174 -35 2 1597 492 32 0 0 chr1 132657535 132657597 -64537835 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1597 319 247 0 0 chr1 132657616 132657689 -64537743 - B3A SINE B2 -105 93 21 2 1597 201 311 0 47 chr1 132658332 132658396 -64537036 + L2b LINE L2 3315 3375 0 2 1597 180 0 0 0 chr1 132658557 132658577 -64536855 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1597 698 139 367 0 chr1 132658591 132658749 -64536683 - B3 SINE B2 0 216 1 2 1597 335 304 8 17 chr1 132658752 132658869 -64536563 - PB1D10 SINE Alu -1 116 1 2 1597 495 287 35 7 chr1 132659331 132659475 -64535957 + B1F SINE Alu 1 148 -1 2 1597 698 87 0 10 chr1 132659498 132659602 -64535830 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 2 1597 364 219 0 0 chr1 132659605 132659669 -64535763 + ID4_ SINE ID 14 77 -6 2 1597 244 161 18 0 chr1 132659669 132659725 -64535707 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1597 378 0 0 0 chr1 132659725 132659767 -64535665 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1597 370 165 94 52 chr1 132659768 132659864 -64535568 + RSINE1 SINE B4 31 130 -35 2 1597 340 252 41 16 chr1 132661562 132661683 -64533749 + (CACAC)n Simple_repeat Simple_repeat 1 124 0 2 1597 382 152 23 39 chr1 132661688 132661818 -64533614 + (CA)n Simple_repeat Simple_repeat 1 128 0 2 1597 228 154 75 32 chr1 132661819 132661913 -64533519 + (CATA)n Simple_repeat Simple_repeat 1 98 0 2 1597 522 125 27 34 chr1 132661914 132662063 -64533369 + (CA)n Simple_repeat Simple_repeat 1 148 0 2 1597 215 133 22 0 chr1 132662092 132662137 -64533295 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1597 212 190 36 48 chr1 132662178 132662261 -64533171 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1597 342 0 0 0 chr1 132662542 132662580 -64532852 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1597 217 349 0 0 chr1 132664175 132664241 -64531191 + MIRc SINE MIR 90 155 -113 2 1597 234 0 0 0 chr1 132664268 132664294 -64531138 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1597 668 144 0 0 chr1 132664334 132664438 -64530994 - B3 SINE B2 -112 104 1 2 1597 222 268 99 0 chr1 132665222 132665293 -64530139 - MIR SINE MIR -10 252 175 2 1597 850 295 129 16 chr1 132665320 132665747 -64529685 + Lx8 LINE L1 6994 7468 -5 2 1597 231 172 0 111 chr1 132665771 132665794 -64529638 + polypurine Low_complexity Low_complexity 3 24 0 2 1597 907 123 0 13 chr1 132665794 132665950 -64529482 + (GAA)n Simple_repeat Simple_repeat 1 154 0 2 1597 231 172 0 111 chr1 132665950 132665963 -64529469 + polypurine Low_complexity Low_complexity 25 34 0 2 1597 1102 73 11 22 chr1 132665963 132666145 -64529287 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1597 231 172 0 111 chr1 132666145 132666179 -64529253 + polypurine Low_complexity Low_complexity 35 66 0 2 1597 186 232 100 14 chr1 132667565 132667635 -64527797 + MIRc SINE MIR 92 167 -101 2 1597 267 103 0 0 chr1 132668089 132668128 -64527304 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 1597 258 374 0 0 chr1 132668272 132668355 -64527077 - RSINE1 SINE B4 -1 164 82 2 1597 326 323 55 82 chr1 132668374 132668556 -64526876 - B4 SINE B4 -114 178 2 2 1597 246 62 0 0 chr1 132668585 132668617 -64526815 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 2 1597 310 189 0 0 chr1 132668625 132668678 -64526754 - ID_B1 SINE B4 -69 155 103 2 1597 290 268 14 0 chr1 132668627 132668698 -64526734 - PB1D10 SINE Alu -45 72 1 2 1597 383 326 68 18 chr1 132669778 132669997 -64525435 + MIR SINE MIR 33 262 0 2 1597 596 244 0 58 chr1 132670124 132670263 -64525169 + RSINE1 SINE B4 2 132 -33 2 1597 1284 100 0 0 chr1 132670612 132670873 -64524559 + (GA)n Simple_repeat Simple_repeat 1 261 0 2 1597 463 281 39 0 chr1 132670981 132671109 -64524323 - B1F SINE Alu -12 137 5 2 1597 458 283 176 24 chr1 132671112 132671442 -64523990 - L1MA5 LINE L1 -445 5855 5476 2 1597 305 238 23 45 chr1 132671519 132671607 -64523825 - RSINE1 SINE B4 -45 120 35 2 1597 302 273 151 29 chr1 132671612 132671884 -64523548 - L1_Mur3 LINE L1 -408 5472 5168 2 1597 259 258 53 16 chr1 132672052 132672141 -64523291 - PB1 SINE Alu -21 96 1 2 1597 854 313 102 23 chr1 132672182 132672741 -64522691 - L1MB7 LINE L1 -40 6144 5542 2 1597 248 275 32 57 chr1 132672767 132672925 -64522507 - L1M5 LINE L1 -404 5836 5683 2 1597 22 35 0 0 chr1 132672981 132673010 -64522422 + AT_rich Low_complexity Low_complexity 1 29 0 2 1597 286 219 58 14 chr1 132673019 132673158 -64522274 + (TA)n Simple_repeat Simple_repeat 2 146 0 2 1597 214 148 18 18 chr1 132673168 132673223 -64522209 + (CATA)n Simple_repeat Simple_repeat 3 57 0 2 1597 864 292 51 22 chr1 132673270 132673582 -64521850 - Lx7 LINE L1 -43 7430 7110 2 1597 1572 297 43 93 chr1 132673581 132674542 -64520890 - Lx7 LINE L1 -1161 6535 5625 2 1597 3027 57 45 0 chr1 132674542 132674945 -64520487 + BGLII LTR ERVK 1 421 0 2 1597 1572 248 21 57 chr1 132674945 132675212 -64520220 - Lx7 LINE L1 -256 5624 5356 2 1597 777 249 26 36 chr1 132675217 132675250 -64520182 - B3 SINE B2 -25 191 164 2 1597 2945 93 5 9 chr1 132675250 132675673 -64519759 - BGLII LTR ERVK 0 421 1 2 1597 777 249 26 36 chr1 132675673 132675831 -64519601 - B3 SINE B2 -53 163 2 2 1597 811 252 116 0 chr1 132675851 132676101 -64519331 - Lx7 LINE L1 -536 5344 5066 2 1597 489 284 44 22 chr1 132676098 132676325 -64519107 - Lx7 LINE L1 -3696 2184 1953 2 1597 3199 156 76 63 chr1 132676325 132677024 -64518408 - RMER19B LTR ERVK -194 708 1 2 1597 291 298 21 0 chr1 132677211 132677305 -64518127 - MLT1A0 LTR MaLR -61 304 209 2 1597 222 275 108 92 chr1 132677527 132677647 -64517785 + ID_B1 SINE B4 78 199 -25 2 1597 363 286 0 39 chr1 132677547 132677649 -64517783 + B1F SINE Alu 26 123 -26 2 1597 240 221 0 94 chr1 132677626 132677711 -64517721 + B1F1 SINE Alu 72 148 -1 2 1597 1101 225 0 0 chr1 132677886 132678095 -64517337 + B3 SINE B2 1 209 -7 2 1597 30 0 0 0 chr1 132678323 132678353 -64517079 + AT_rich Low_complexity Low_complexity 1 30 0 2 1597 315 0 0 0 chr1 132678902 132678937 -64516495 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1597 387 233 92 25 chr1 132678963 132679082 -64516350 - RSINE1 SINE B4 -35 130 4 2 1597 243 288 225 0 chr1 132679505 132679585 -64515847 + PB1D10 SINE Alu 15 112 -5 2 1597 716 209 0 147 chr1 132680274 132680465 -64514967 + B3 SINE B2 1 163 -53 2 1597 24 32 0 0 chr1 132680467 132680498 -64514934 + AT_rich Low_complexity Low_complexity 1 31 0 2 1597 737 251 6 12 chr1 132680519 132680688 -64514744 + B3 SINE B2 49 216 0 2 1597 342 91 0 0 chr1 132681012 132681067 -64514365 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1597 521 193 53 0 chr1 132681097 132681247 -64514185 + GA-rich Low_complexity Low_complexity 4 161 0 2 1597 972 250 53 5 chr1 132681519 132681768 -64513664 - Lx8 LINE L1 -326 7147 6876 2 1597 2100 193 3 11 chr1 132682349 132682711 -64512721 - Lx5 LINE L1 -307 6743 6385 2 1597 4201 127 101 20 chr1 132682737 132683471 -64511961 + Lx5 LINE L1 5587 6379 -671 2 1597 344 220 22 0 chr1 132683963 132684054 -64511378 + CT-rich Low_complexity Low_complexity 4 96 0 2 1597 1204 235 40 29 chr1 132685045 132685396 -64510036 - L1_Mur3 LINE L1 -1934 3946 3592 2 1597 1819 253 29 73 chr1 132685528 132686121 -64509311 + RMER1B Other Other 1 513 -553 2 1597 5193 177 26 68 chr1 132686123 132687073 -64508359 + RMER1A Other Other 1 910 -120 2 1597 1105 17 0 58 chr1 132687073 132687264 -64508168 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1597 5193 177 26 68 chr1 132687264 132687388 -64508044 + RMER1A Other Other 911 1030 0 2 1597 4058 210 37 71 chr1 132687380 132688559 -64506873 - L1_Mur3 LINE L1 -2277 3603 2465 2 1597 339 305 13 54 chr1 132688561 132688710 -64506722 - RLTR14 LTR ERV1 -7 375 233 2 1597 3475 212 29 76 chr1 132689002 132689316 -64506116 - L1_Mur3 LINE L1 -3411 2469 2184 2 1597 812 179 0 15 chr1 132689316 132689452 -64505980 - B1_Mur4 SINE Alu -12 138 5 2 1597 3475 212 29 76 chr1 132689452 132690163 -64505269 - L1_Mur3 LINE L1 -3697 2183 1492 2 1597 933 278 16 35 chr1 132690276 132690530 -64504902 - Lx8 LINE L1 -962 6511 6263 2 1597 810 242 40 43 chr1 132690891 132691261 -64504171 - L1_Mur3 LINE L1 -4381 1499 1127 2 1597 1058 253 108 27 chr1 132691403 132691736 -64503696 + Lx8 LINE L1 6358 6717 -756 3 1597 566 256 59 109 chr1 132691740 132691942 -64503490 + B3 SINE B2 1 192 -24 3 1597 204 67 0 0 chr1 132691967 132691997 -64503435 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 3 1597 1897 251 158 52 chr1 132691997 132692689 -64502743 + Lx8 LINE L1 6704 7468 -5 3 1597 481 185 231 0 chr1 132693121 132693251 -64502181 + RLTR11A LTR ERVK 1 160 -368 3 1597 455 287 13 53 chr1 132693650 132693801 -64501631 + B3A SINE B2 1 145 -53 3 1597 262 295 0 13 chr1 132694109 132694188 -64501244 - ID4 SINE ID -4 79 2 3 1597 442 78 0 0 chr1 132694346 132694410 -64501022 + B1_Mus2 SINE Alu 82 145 -2 3 1597 214 250 0 0 chr1 132695625 132695665 -64499767 + polypurine Low_complexity Low_complexity 3 42 0 3 1597 268 164 0 43 chr1 132695921 132695991 -64499441 + A-rich Low_complexity Low_complexity 6 72 0 3 1597 288 0 0 0 chr1 132696326 132696358 -64499074 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1597 299 302 9 28 chr1 132698633 132698742 -64496690 + CT-rich Low_complexity Low_complexity 2 108 0 3 1597 423 0 0 0 chr1 132700051 132700098 -64495334 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1597 4816 150 47 34 chr1 132701631 132702527 -64492905 - RMER13B LTR ERVK 0 908 1 3 1597 27 0 0 0 chr1 132702701 132702728 -64492704 + AT_rich Low_complexity Low_complexity 1 27 0 3 1597 450 0 0 0 chr1 132703166 132703216 -64492216 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1597 425 120 326 0 chr1 132703298 132703390 -64492042 - B3 SINE B2 -86 130 9 3 1597 1276 297 151 50 chr1 132703391 132705028 -64490404 - L1_Mur3 LINE L1 -2429 3418 1488 3 1597 641 174 8 0 chr1 132705030 132705162 -64490270 + CT-rich Low_complexity Low_complexity 3 135 0 3 1597 341 218 108 64 chr1 132705267 132705472 -64489960 - L1_Mur3 LINE L1 -4444 1403 1174 3 1597 860 130 14 0 chr1 132705472 132705618 -64489814 + (TTCTC)n Simple_repeat Simple_repeat 2 149 0 3 1597 5883 115 71 6 chr1 132705621 132706552 -64488880 - Lx3C LINE L1 0 6976 5986 3 1597 471 60 0 0 chr1 132707305 132707372 -64488060 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1597 459 0 0 0 chr1 132710276 132710327 -64485105 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1597 1492 129 4 22 chr1 132712515 132712745 -64482687 + URR1A DNA MER1_type 1 226 0 3 1597 678 25 0 0 chr1 132712815 132712895 -64482537 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1597 573 158 0 0 chr1 132713661 132713762 -64481670 + (CATA)n Simple_repeat Simple_repeat 2 102 0 3 1597 294 138 0 0 chr1 132714623 132714681 -64480751 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1597 261 305 45 54 chr1 132716671 132716782 -64478650 + PB1D7 SINE Alu 6 115 -5 3 1597 509 247 50 170 chr1 132717952 132718416 -64477016 + RMER10A LTR ERVL 18 425 -17 3 1597 437 342 68 50 chr1 132720407 132720746 -64474686 + MLT1C LTR MaLR 117 461 -6 3 1597 270 328 46 16 chr1 132720777 132720956 -64474476 - MIR3 SINE MIR -23 185 6 3 1597 328 256 146 42 chr1 132722314 132722506 -64472926 + MamGypLTR2b LTR Gypsy 692 903 -19 3 1597 299 235 111 56 chr1 132723691 132723799 -64471633 + MIRc SINE MIR 105 218 -50 3 1597 207 0 0 0 chr1 132724994 132725017 -64470415 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 3 1597 23 0 0 0 chr1 132725669 132725692 -64469740 + AT_rich Low_complexity Low_complexity 1 23 0 3 1597 320 250 31 12 chr1 132725705 132725867 -64469565 + (TG)n Simple_repeat Simple_repeat 1 165 0 3 1597 191 205 26 0 chr1 132726000 132726039 -64469393 + MIR SINE MIR 159 198 -64 3 1597 1559 91 27 18 chr1 132727519 132727743 -64467689 - URR1A DNA MER1_type 0 226 1 3 1597 297 0 0 0 chr1 132728343 132728376 -64467056 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1597 246 62 0 0 chr1 132728645 132728677 -64466755 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1597 333 198 0 0 chr1 132730133 132730229 -64465203 + CT-rich Low_complexity Low_complexity 1 96 0 3 1597 297 0 0 0 chr1 132731302 132731335 -64464097 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1597 324 0 0 0 chr1 132731659 132731695 -64463737 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 1597 269 297 55 19 chr1 132732259 132732481 -64462951 - RLTR6-int LTR ERV1 -399 4664 4561 3 1597 273 312 148 26 chr1 132733918 132734188 -64461244 - RLTR6-int LTR ERV1 -3209 4397 4095 3 1597 271 306 18 18 chr1 132734498 132734611 -64460821 - RLTR1B-int LTR ERV1 -1507 1792 1680 3 1597 429 325 41 48 chr1 132734693 132734987 -64460445 - RLTR14-int LTR ERV1 -3261 2056 1765 3 1597 546 348 28 27 chr1 132735167 132735620 -64459812 - RLTR6-int LTR ERV1 -4640 3138 2715 3 1597 278 24 73 0 chr1 132737025 132737066 -64458366 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 3 1597 499 256 71 160 chr1 132738831 132739268 -64456164 + RMER10A LTR ERVL 18 415 -27 3 1597 1033 209 5 24 chr1 132740197 132740408 -64455024 - B3 SINE B2 -9 207 1 3 1597 265 345 151 70 chr1 132742271 132742555 -64452877 - Helitron3Na_Mam RC Helitron -124 362 56 3 1597 254 290 16 0 chr1 132744475 132744537 -64450895 + tRNA-Ala-GCY_ tRNA tRNA 6 68 -7 3 1597 633 233 31 8 chr1 132748213 132748343 -64447089 + ID_B1 SINE B4 86 218 -6 3 1597 1141 78 12 0 chr1 132748382 132748548 -64446884 + (GAA)n Simple_repeat Simple_repeat 1 168 0 3 1597 1283 40 35 10 chr1 132749224 132749623 -64445809 + (CCCCAG)n Simple_repeat Simple_repeat 1 408 0 3 1597 274 354 83 47 chr1 132749629 132749798 -64445634 - L4 LINE RTE -1520 509 335 3 1597 427 273 9 18 chr1 132750501 132750613 -64444819 + PB1D10 SINE Alu 7 117 0 3 1597 875 244 232 10 chr1 132750701 132751105 -64444327 + RLTR16 LTR ERVK 1 493 -12 3 1597 705 43 0 0 chr1 132752736 132752829 -64442603 + (GAA)n Simple_repeat Simple_repeat 1 93 0 3 1597 459 0 0 0 chr1 132752871 132752922 -64442510 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1597 386 290 81 89 chr1 132753317 132753813 -64441619 + L1_Mur1 LINE L1 1454 1945 -3941 3 1597 589 276 28 39 chr1 132753827 132754008 -64441424 + B3 SINE B2 2 180 -36 3 1597 25 0 0 0 chr1 132754008 132754033 -64441399 + AT_rich Low_complexity Low_complexity 1 25 0 3 1597 264 333 59 27 chr1 132754292 132754511 -64440921 + L1_Rod LINE L1 2160 2385 -3462 3 1597 903 151 7 0 chr1 132754521 132754667 -64440765 + B1_Mus1 SINE Alu 1 147 -1 3 1597 22 88 0 0 chr1 132754721 132754778 -64440654 + AT_rich Low_complexity Low_complexity 1 57 0 3 1597 15211 75 11 6 chr1 132755562 132758319 -64437113 + L1_Mus2 LINE L1 3791 6566 0 3 1597 261 0 0 0 chr1 132758352 132758381 -64437051 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1597 1128 79 0 0 chr1 132758393 132758533 -64436899 - B1_Mus1 SINE Alu -4 144 5 3 1597 769 162 106 43 chr1 132758623 132758784 -64436648 + RMER5 LTR ERV1 364 534 0 3 1597 189 107 0 0 chr1 132759475 132759503 -64435929 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3 1597 3515 188 108 18 chr1 132759522 132760253 -64435179 - Lx7 LINE L1 -363 7333 6537 3 1597 200 266 205 27 chr1 132761297 132761409 -64434023 - MIRc SINE MIR -44 224 93 3 1597 466 82 10 8 chr1 132761877 132761949 -64433483 + B1_Mus2 SINE Alu 55 147 0 3 1597 250 45 45 0 chr1 132761956 132762000 -64433432 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 3 1597 1050 293 12 101 chr1 132763356 132763670 -64431762 + MTEa LTR MaLR 1 284 -95 3 1597 1078 215 72 0 chr1 132763670 132763879 -64431553 - URR1B DNA MER1_type -1 224 1 3 1597 1050 293 12 101 chr1 132763879 132763978 -64431454 + MTEa LTR MaLR 285 377 -2 3 1597 764 299 141 13 chr1 132763982 132764160 -64431272 + MTEa-int LTR MaLR 3 183 -1397 3 1597 258 81 0 0 chr1 132764160 132764197 -64431235 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 3 1597 764 298 73 40 chr1 132764197 132764522 -64430910 + MTEa-int LTR MaLR 184 583 -997 3 1597 994 268 136 34 chr1 132764523 132764807 -64430625 - MTC LTR MaLR 0 421 96 3 1597 1185 68 0 0 chr1 132764807 132764954 -64430478 - B1_Mus1 SINE Alu 0 148 2 3 1597 994 268 136 34 chr1 132764954 132765051 -64430381 - MTC LTR MaLR -326 95 1 3 1597 1647 295 52 50 chr1 132765051 132765613 -64429819 + MTEa-int LTR MaLR 580 1142 -438 3 1597 264 273 19 57 chr1 132765710 132765724 -64429708 + Zaphod DNA Tip100 3931 3943 -88 3 1597 386 292 210 17 chr1 132765724 132765905 -64429527 - ID_B1 SINE B4 -7 217 2 3 1597 264 273 19 57 chr1 132765905 132765995 -64429437 + Zaphod DNA Tip100 3944 4031 0 3 1597 423 0 0 0 chr1 132766125 132766172 -64429260 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1597 222 241 0 129 chr1 132766195 132766257 -64429175 - RSINE1 SINE B4 -14 151 98 3 1597 363 306 113 75 chr1 132766223 132766488 -64428944 - B4 SINE B4 -16 276 2 3 1597 393 307 164 30 chr1 132766737 132767110 -64428322 - L2 LINE L2 -1085 2334 1912 3 1597 312 337 51 56 chr1 132767445 132767569 -64427863 - B3 SINE B2 -2 214 2 3 1597 363 322 11 0 chr1 132767569 132767659 -64427773 - RSINE1 SINE B4 -72 93 3 3 1597 660 281 92 0 chr1 132767693 132767878 -64427554 + B4A SINE B4 5 206 -86 3 1597 2131 163 71 8 chr1 132769170 132769331 -64426101 + ORR1D1 LTR MaLR 1 185 -189 3 1597 273 29 0 0 chr1 132769331 132769365 -64426067 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1597 531 0 0 0 chr1 132769365 132769423 -64426009 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1597 2131 163 71 8 chr1 132769423 132769612 -64425820 + ORR1D1 LTR MaLR 186 373 -1 3 1597 203 249 42 149 chr1 132772195 132772333 -64423099 - L2c LINE L2 -109 3266 3123 3 1597 3153 142 31 25 chr1 132772919 132773432 -64422000 - RMER20A LTR ERVK 0 516 1 3 1597 261 329 89 19 chr1 132774034 132774192 -64421240 - MIRc SINE MIR -78 190 22 3 1597 1254 26 0 0 chr1 132775381 132775535 -64419897 + (GA)n Simple_repeat Simple_repeat 2 155 0 3 1598 453 19 0 0 chr1 132776170 132776224 -64419208 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1598 938 233 0 19 chr1 132778305 132778515 -64416917 + B3 SINE B2 4 209 -7 3 1598 180 0 0 0 chr1 132779765 132779785 -64415647 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1598 370 278 31 23 chr1 132780162 132780291 -64415141 - MIRb SINE MIR -81 187 58 3 1598 234 226 68 45 chr1 132781982 132782070 -64413362 + MIRc SINE MIR 117 206 -62 3 1598 313 298 73 27 chr1 132782515 132782669 -64412763 + MLT1A1 LTR MaLR 311 408 0 3 1598 591 277 50 0 chr1 132784225 132784366 -64411066 + ID_B1 SINE B4 77 224 0 3 1598 257 299 148 9 chr1 132785297 132785405 -64410027 + MER58B DNA MER1_type 212 334 -7 4 1598 4818 47 0 8 chr1 132786436 132787022 -64408410 - L1Md_F2 LINE L1 -1 6581 6001 4 1598 455 53 0 0 chr1 132787022 132787079 -64408353 + L1_Mm LINE L1 4553 4609 -1274 4 1598 246 296 87 43 chr1 132787215 132787353 -64408079 + MER20 DNA MER1_type 1 144 -75 4 1598 198 78 0 135 chr1 132787703 132787777 -64407655 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 4 1598 1076 37 73 0 chr1 132787777 132787913 -64407519 - B1_Mus2 SINE Alu -1 146 1 4 1598 390 223 0 0 chr1 132788015 132788136 -64407296 + C-rich Low_complexity Low_complexity 4 124 0 4 1598 320 333 0 0 chr1 132788136 132788223 -64407209 - PB1D10 SINE Alu -6 111 25 4 1598 303 280 122 71 chr1 132788231 132788427 -64407005 + L1MB7 LINE L1 5918 6123 -61 4 1598 872 173 0 6 chr1 132788498 132788678 -64406754 + GA-rich Low_complexity Low_complexity 1 179 0 4 1598 629 325 79 66 chr1 132789682 132789918 -64405514 + MER21B LTR ERV1 277 530 -333 4 1598 216 0 0 0 chr1 132789918 132789942 -64405490 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1598 629 325 79 66 chr1 132789942 132790071 -64405361 + MER21B LTR ERV1 531 647 -216 4 1598 380 292 91 96 chr1 132790088 132790296 -64405136 + MTE2a LTR MaLR 1 207 -172 4 1598 459 281 102 0 chr1 132790333 132790461 -64404971 + MTE2a LTR MaLR 193 333 -46 4 1598 469 184 353 6 chr1 132791351 132791481 -64403951 + ORR1C2 LTR MaLR 2 189 -195 4 1598 711 88 0 0 chr1 132791481 132791594 -64403838 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 1598 469 184 353 6 chr1 132791594 132791633 -64403799 + ORR1C2 LTR MaLR 190 229 -155 4 1598 423 0 0 0 chr1 132791897 132791944 -64403488 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1598 423 0 0 0 chr1 132792349 132792396 -64403036 + (ATG)n Simple_repeat Simple_repeat 2 48 0 4 1598 486 49 0 0 chr1 132792398 132792459 -64402973 + (GGAGAA)n Simple_repeat Simple_repeat 3 63 0 4 1598 1137 128 0 0 chr1 132792459 132792639 -64402793 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1598 2333 102 90 11 chr1 132792780 132793146 -64402286 - RMER10B LTR ERVL 0 398 4 4 1598 309 289 158 16 chr1 132793193 132793383 -64402049 - RLTR19-int LTR ERVK -75 3163 2947 4 1598 1032 172 51 68 chr1 132793566 132793803 -64401629 - RLTR19-int LTR ERVK -3381 2756 2524 4 1598 187 385 84 16 chr1 132793845 132794035 -64401397 - MIRc SINE MIR -36 232 30 4 1598 300 244 84 12 chr1 132794041 132794124 -64401308 + MIRb SINE MIR 4 92 -176 4 1598 489 217 162 71 chr1 132794127 132794281 -64401151 - ORR1E LTR MaLR -194 180 13 4 1598 437 317 86 5 chr1 132794470 132794657 -64400775 - L1MEg LINE L1 -5118 966 765 4 1598 372 238 20 10 chr1 132794668 132794770 -64400662 - L1MA10 LINE L1 -19 6315 6213 4 1598 378 0 0 0 chr1 132794773 132794815 -64400617 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1598 293 361 35 12 chr1 132794834 132795005 -64400427 - L1M4 LINE L1 -410 5769 5595 4 1598 619 279 56 36 chr1 132795025 132795274 -64400158 + RLTR42-int LTR ERVK 1148 1401 -4121 4 1598 909 142 0 0 chr1 132795906 132796061 -64399371 + (TC)n Simple_repeat Simple_repeat 2 156 0 4 1598 830 184 6 0 chr1 132796056 132796235 -64399197 + CT-rich Low_complexity Low_complexity 1 180 0 4 1598 343 286 18 18 chr1 132796235 132796349 -64399083 - PB1D10 SINE Alu -1 116 3 4 1598 416 268 99 46 chr1 132796357 132796883 -64398549 - L1M4 LINE L1 -2305 5480 4919 4 1598 252 0 0 0 chr1 132796953 132796981 -64398451 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 4 1598 297 0 0 0 chr1 132796981 132797013 -64398419 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1598 261 306 101 10 chr1 132797039 132797138 -64398294 - PB1D10 SINE Alu 0 117 10 4 1598 239 327 47 68 chr1 132797204 132797526 -64397906 - L1M4 LINE L1 -1329 4817 4503 4 1598 688 297 32 35 chr1 132797592 132797875 -64397557 + B4A SINE B4 11 292 0 4 1598 743 226 38 6 chr1 132797978 132798138 -64397294 - B3 SINE B2 0 216 52 4 1598 432 0 0 0 chr1 132798138 132798186 -64397246 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1598 477 265 41 33 chr1 132798191 132798312 -64397120 - B3A SINE B2 -30 168 47 4 1598 392 51 0 17 chr1 132798312 132798372 -64397060 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1598 1133 68 7 0 chr1 132798376 132798522 -64396910 - B1_Mus1 SINE Alu 0 148 2 4 1598 210 205 0 0 chr1 132798522 132798561 -64396871 - B3A SINE B2 -158 40 2 4 1598 477 0 0 0 chr1 132798620 132798673 -64396759 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 4 1598 1176 83 13 0 chr1 132798673 132798830 -64396602 - B2_Mm2 SINE B2 -36 159 1 4 1598 416 355 74 14 chr1 132798831 132799048 -64396384 - L1MC LINE L1 -1763 4383 4154 4 1598 311 327 29 4 chr1 132799049 132799172 -64396260 + MIR SINE MIR 20 142 -126 4 1598 22 70 0 0 chr1 132799489 132799532 -64395900 + AT_rich Low_complexity Low_complexity 1 43 0 4 1598 238 353 85 76 chr1 132799830 132800066 -64395366 + MLT1N2 LTR MaLR 52 289 -273 4 1598 2895 35 8 8 chr1 132800111 132800462 -64394970 + L1Md_F2 LINE L1 6232 6582 0 4 1598 1169 270 155 42 chr1 132800468 132800966 -64394466 - MER89 LTR ERV1 -5 554 1 4 1598 709 312 126 48 chr1 132801635 132801945 -64393487 - MER2 DNA MER2_type -5 340 7 4 1598 464 59 0 14 chr1 132801955 132802024 -64393408 + (CATA)n Simple_repeat Simple_repeat 2 69 0 4 1598 375 324 217 21 chr1 132802024 132802213 -64393219 - MER44D DNA MER2_type -113 226 1 4 1598 240 186 34 0 chr1 132803646 132803705 -64391727 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 4 1598 399 125 0 0 chr1 132804164 132804236 -64391196 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1598 301 109 18 35 chr1 132804236 132804293 -64391139 - HAL1-3A_ME LINE L1 -831 2027 1972 4 1598 304 335 142 29 chr1 132804322 132804568 -64390864 - L2c LINE L2 -19 3368 3095 4 1598 1005 184 39 29 chr1 132805032 132805239 -64390193 - B3 SINE B2 0 216 8 4 1598 1296 67 77 16 chr1 132805662 132805844 -64389588 + B2_Mm2 SINE B2 2 194 -1 4 1598 426 20 0 0 chr1 132805985 132806036 -64389396 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 4 1598 189 0 0 0 chr1 132807585 132807606 -64387826 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 4 1598 235 264 71 62 chr1 132808282 132808395 -64387037 - IAPLTR2_Mm LTR ERVK -42 433 320 4 1598 247 221 229 52 chr1 132808889 132809042 -64386390 - MER96B DNA hAT -90 327 148 4 1598 637 251 109 30 chr1 132809149 132809416 -64386016 + B4 SINE B4 5 292 0 4 1598 651 151 0 0 chr1 132809416 132809542 -64385890 + (CA)n Simple_repeat Simple_repeat 1 126 0 4 1598 276 30 0 0 chr1 132809620 132809653 -64385779 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1598 240 274 114 45 chr1 132809698 132809786 -64385646 - MER81 DNA AcHobo -20 94 1 4 1598 185 287 160 0 chr1 132809787 132809881 -64385551 + MIRb SINE MIR 114 222 -46 4 1598 2735 176 65 16 chr1 132809953 132810460 -64384972 + RMER5 LTR ERV1 1 532 -2 4 1598 3421 38 2 0 chr1 132810526 132810921 -64384511 - MTA_Mm LTR MaLR 0 396 1 4 1598 9580 16 5 8 chr1 132810921 132812023 -64383409 - MTA_Mm-int LTR MaLR 0 1098 1 4 1598 3447 35 2 0 chr1 132812023 132812418 -64383014 - MTA_Mm LTR MaLR 0 396 1 4 1598 516 77 0 0 chr1 132812952 132813030 -64382402 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1598 2333 157 60 16 chr1 132813096 132813530 -64381902 + RMER4B LTR ERVK 17 469 -116 4 1598 654 168 99 99 chr1 132813521 132813552 -64381880 + RMER5 LTR ERV1 363 390 -144 4 1598 1448 59 0 26 chr1 132813552 132813744 -64381688 + B2_Mm2 SINE B2 2 188 -7 4 1598 654 168 99 99 chr1 132813744 132813884 -64381548 + RMER5 LTR ERV1 391 534 0 4 1598 432 0 0 0 chr1 132815233 132815281 -64380151 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1598 363 304 161 33 chr1 132815739 132815919 -64379513 + Charlie4a DNA MER1_type 54 256 -252 4 1598 595 253 161 58 chr1 132815922 132816182 -64379250 + RLTR20D LTR ERVK 1 287 -281 4 1598 737 233 6 25 chr1 132816166 132816226 -64379206 + RLTR20D LTR ERVK 407 464 -104 4 1598 231 36 0 0 chr1 132816226 132816254 -64379178 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1598 737 233 6 25 chr1 132816254 132816356 -64379076 + RLTR20D LTR ERVK 465 565 -3 4 1598 388 278 261 0 chr1 132816367 132816547 -64378885 + Charlie4a DNA MER1_type 282 508 0 4 1598 33455 71 2 18 chr1 132816631 132821818 -64373614 + L1Md_F2 LINE L1 220 5588 -298 4 1598 7874 56 9 3 chr1 132821820 132822798 -64372634 + L1Md_F2 LINE L1 5591 6574 -11 4 1598 193 333 0 0 chr1 132822954 132823014 -64372418 - L2c LINE L2 -223 3164 3105 4 1598 614 176 18 18 chr1 132823232 132823342 -64372090 + B3 SINE B2 96 205 -11 4 1598 919 118 7 7 chr1 132823342 132823496 -64371936 + (GGA)n Simple_repeat Simple_repeat 1 154 0 4 1598 1085 128 0 6 chr1 132823496 132823677 -64371755 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1598 313 262 49 12 chr1 132823877 132823958 -64371474 + B1F SINE Alu 7 90 -59 4 1598 253 322 138 0 chr1 132824267 132824354 -64371078 + PB1 SINE Alu 5 103 -24 4 1598 482 291 8 0 chr1 132824277 132824404 -64371028 + ID_B1 SINE B4 97 224 0 4 1598 503 307 68 9 chr1 132824709 132824929 -64370503 - Lx8 LINE L1 -72 7401 7169 4 1598 198 269 93 113 chr1 132824970 132825121 -64370311 - MIR SINE MIR -62 200 53 4 1598 302 291 23 70 chr1 132825486 132825700 -64369732 - RMER17C LTR ERVK -104 306 103 4 1598 345 281 85 17 chr1 132826126 132826361 -64369071 - L1_Rod LINE L1 -460 5387 5137 4 1598 1972 175 139 69 chr1 132826374 132826883 -64368549 - RMER15 LTR ERVL -4 571 27 4 1598 5781 74 64 4 chr1 132826905 132827690 -64367742 + L1_Mus3 LINE L1 5805 6636 -2 4 1598 238 288 17 0 chr1 132827756 132827815 -64367617 - RMER15 LTR ERVL -515 60 1 4 1598 283 218 0 0 chr1 132827818 132827873 -64367559 - L1M2 LINE L1 -954 5189 5135 4 1598 189 0 0 0 chr1 132828230 132828251 -64367181 + (TC)n Simple_repeat Simple_repeat 1 21 0 4 1598 4777 68 3 5 chr1 132828252 132828868 -64366564 + L1Md_F2 LINE L1 5966 6580 -2 4 1598 298 225 12 48 chr1 132829033 132829117 -64366315 + MLT1A1 LTR MaLR 318 398 -10 4 1598 209 157 19 19 chr1 132829629 132829681 -64365751 + A-rich Low_complexity Low_complexity 5 56 0 4 1598 1931 157 23 20 chr1 132830264 132830616 -64364816 + RLTR15 LTR ERVK 1 353 -6 4 1598 251 350 62 20 chr1 132830788 132830934 -64364498 + MIRb SINE MIR 88 239 -29 4 1598 264 303 50 0 chr1 132831044 132831143 -64364289 + MER5A1 DNA MER1_type 30 133 -33 4 1598 229 349 17 67 chr1 132831878 132832056 -64363376 - MIRc SINE MIR -66 202 34 4 1598 697 152 30 6 chr1 132833422 132833588 -64361844 + GA-rich Low_complexity Low_complexity 2 171 0 5 1598 321 275 108 58 chr1 132833595 132833734 -64361698 + RSINE1 SINE B4 20 165 0 5 1598 204 88 0 56 chr1 132834095 132834131 -64361301 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1598 1131 242 149 15 chr1 132834174 132834631 -64360801 + RMER5 LTR ERV1 17 534 0 5 1598 376 287 25 25 chr1 132834631 132834749 -64360683 - B1F1 SINE Alu -31 118 1 5 1598 423 0 0 0 chr1 132836454 132836501 -64358931 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1598 196 30 61 0 chr1 132837256 132837289 -64358143 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1598 452 277 19 71 chr1 132837587 132837797 -64357635 + Lx8 LINE L1 7257 7455 -18 5 1598 576 227 18 9 chr1 132838895 132839006 -64356426 - PB1D10 SINE Alu -5 112 1 5 1598 213 236 125 100 chr1 132839255 132839335 -64356097 + ID_B1 SINE B4 50 131 -93 5 1598 271 286 72 62 chr1 132839288 132839385 -64356047 + PB1D10 SINE Alu 8 105 -12 5 1598 422 234 103 0 chr1 132839811 132839918 -64355514 + B1_Mur3 SINE Alu 32 149 0 5 1598 775 189 0 20 chr1 132840030 132840181 -64355251 + B1_Mur2 SINE Alu 2 149 0 5 1598 414 250 79 24 chr1 132840229 132840356 -64355076 + B3 SINE B2 67 200 -16 5 1598 195 42 0 0 chr1 132840356 132840380 -64355052 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 5 1598 234 268 0 0 chr1 132841571 132841627 -64353805 - MER53 DNA hAT -133 60 5 5 1598 263 256 108 12 chr1 132841745 132841828 -64353604 + B1_Mm SINE Alu 1 91 -56 5 1598 329 131 82 0 chr1 132841924 132841985 -64353447 + HAL1-3A_ME LINE L1 1975 2040 -818 5 1598 255 286 52 0 chr1 132842147 132842224 -64353208 - Arthur1B DNA Tip100 -446 779 699 5 1598 244 379 106 15 chr1 132842386 132842651 -64352781 - Arthur1B DNA Tip100 -836 389 101 5 1598 253 255 31 100 chr1 132842803 132843064 -64352368 - RMER17C LTR ERVK -59 351 109 5 1598 447 106 0 0 chr1 132843074 132843140 -64352292 + (TCC)n Simple_repeat Simple_repeat 3 68 0 5 1598 21 71 0 0 chr1 132843196 132843238 -64352194 + AT_rich Low_complexity Low_complexity 1 42 0 5 1598 866 154 7 39 chr1 132843280 132843435 -64351997 + B1_Mur4 SINE Alu 1 150 0 5 1598 413 363 10 10 chr1 132843719 132843911 -64351521 - MIR SINE MIR -61 201 10 5 1598 225 0 0 0 chr1 132845020 132845045 -64350387 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 5 1598 473 292 19 19 chr1 132845221 132845378 -64350054 + RSINE1 SINE B4 9 165 0 5 1598 276 100 0 0 chr1 132845379 132845419 -64350013 + (CCA)n Simple_repeat Simple_repeat 1 40 0 5 1598 192 77 0 0 chr1 132845714 132845740 -64349692 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1598 333 109 0 0 chr1 132845882 132845937 -64349495 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1598 983 132 111 0 chr1 132846002 132846191 -64349241 - ORR1C2 LTR MaLR 0 384 175 5 1598 619 139 9 9 chr1 132846191 132846307 -64349125 + GA-rich Low_complexity Low_complexity 2 117 0 5 1598 626 202 139 0 chr1 132846307 132846465 -64348967 - ORR1C2 LTR MaLR -198 180 1 5 1598 273 317 129 0 chr1 132847234 132847335 -64348097 - MER81 DNA AcHobo 0 114 1 5 1598 3587 15 2 0 chr1 132847522 132847917 -64347515 + MTA_Mm LTR MaLR 1 396 0 5 1598 284 118 11 45 chr1 132848404 132848493 -64346939 + T-rich Low_complexity Low_complexity 3 88 0 5 1598 927 131 14 0 chr1 132848654 132848799 -64346633 - B1_Mur3 SINE Alu 0 149 3 5 1598 226 297 0 32 chr1 132850443 132850537 -64344895 - L1M1 LINE L1 -375 5925 5835 5 1598 4182 186 81 104 chr1 132850573 132850843 -64344589 - Lx5 LINE L1 0 7050 6769 5 1598 564 40 0 0 chr1 132850843 132850917 -64344515 - MT2C_Mm LTR ERVL 0 475 402 5 1598 4182 186 81 104 chr1 132850917 132851678 -64343754 - Lx5 LINE L1 0 6768 5972 5 1598 11681 149 139 31 chr1 132851685 132853047 -64342385 + L1_Mur2 LINE L1 505 2113 -3764 5 1598 8628 28 2 0 chr1 132853047 132854041 -64341391 + L1Md_T LINE L1 5587 6582 0 5 1598 1510 30 0 56 chr1 132854044 132854257 -64341175 + L1Md_F2 LINE L1 6382 6582 0 5 1598 11681 114 168 8 chr1 132854257 132855662 -64339770 + L1_Mur2 LINE L1 2114 3650 -2227 5 1598 1263 117 16 5 chr1 132855947 132856136 -64339296 + B2_Mm2 SINE B2 1 191 -4 5 1598 2123 145 81 3 chr1 132856287 132856668 -64338764 - MTC LTR MaLR -5 416 6 5 1598 378 0 0 0 chr1 132856846 132856888 -64338544 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 1598 501 172 0 0 chr1 132857928 132858021 -64337411 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 5 1598 702 0 0 0 chr1 132858073 132858151 -64337281 + (CTATT)n Simple_repeat Simple_repeat 5 82 0 5 1598 255 325 109 66 chr1 132858513 132858862 -64336570 - L2c LINE L2 0 3387 3024 5 1598 380 297 68 0 chr1 132858957 132859075 -64336357 + MLT1G1 LTR MaLR 454 579 0 5 1598 264 122 0 0 chr1 132859092 132859133 -64336299 + (GGA)n Simple_repeat Simple_repeat 3 43 0 5 1598 230 241 19 0 chr1 132859476 132859530 -64335902 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1598 313 294 86 22 chr1 132859655 132859794 -64335638 - B3A SINE B2 -49 149 2 5 1598 264 382 30 0 chr1 132859806 132859971 -64335461 + L3 LINE CR1 3572 3741 -748 5 1598 580 224 107 68 chr1 132860129 132860306 -64335126 + ID_B1 SINE B4 1 184 -40 5 1598 688 279 59 25 chr1 132860284 132860523 -64334909 - MTEa LTR MaLR -113 266 20 5 1598 620 273 68 63 chr1 132860776 132861189 -64334243 - RLTR26 LTR ERVK -207 435 1 5 1598 1446 205 23 0 chr1 132861458 132861721 -64333711 - Lx4B LINE L1 -363 6695 6427 5 1598 591 250 66 132 chr1 132861721 132862039 -64333393 + Lx2B LINE L1 6694 6990 -10 5 1598 3125 270 43 32 chr1 132862191 132863387 -64332045 + L1_Mur3 LINE L1 3204 4413 -1467 5 1598 438 209 67 67 chr1 132863435 132863614 -64331818 + B3 SINE B2 37 215 -1 5 1598 228 242 146 10 chr1 132863620 132863716 -64331716 + L1_Mur3 LINE L1 4431 4539 -1341 5 1598 945 136 0 0 chr1 132864533 132864687 -64330745 + (TTC)n Simple_repeat Simple_repeat 1 154 0 5 1598 544 91 11 11 chr1 132864704 132864793 -64330639 + (TCC)n Simple_repeat Simple_repeat 3 91 0 5 1598 1165 249 107 37 chr1 132865212 132865670 -64329762 + L1_Mur3 LINE L1 2439 2928 -2952 5 1598 375 23 0 0 chr1 132865696 132865740 -64329692 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1598 977 197 94 120 chr1 132865740 132866145 -64329287 - MT2A LTR ERVL -76 525 1 5 1598 400 254 18 14 chr1 132866145 132866300 -64329132 + L1_Mur3 LINE L1 2923 3108 -3035 5 1598 1497 52 0 30 chr1 132866414 132866612 -64328820 + B2_Mm2 SINE B2 1 192 -3 5 1598 760 277 58 58 chr1 132866731 132867110 -64328322 + L1MA4 LINE L1 5506 5884 -416 5 1598 4586 8 0 0 chr1 132867113 132867616 -64327816 + L1Md_A LINE L1 6080 6582 0 5 1598 373 247 32 0 chr1 132867854 132867947 -64327485 + B1_Mus1 SINE Alu 1 96 -52 5 1598 615 192 17 0 chr1 132867969 132868146 -64327286 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1598 546 304 92 31 chr1 132868202 132868630 -64326802 - ERVL-E-int LTR ERVL -408 5259 4860 5 1598 204 55 0 53 chr1 132869107 132869145 -64326287 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1598 1087 144 10 40 chr1 132869518 132869720 -64325712 - URR1B DNA MER1_type 0 225 30 5 1598 36341 59 9 1 chr1 132869774 132875295 -64320137 - L1Md_F2 LINE L1 0 6582 1016 5 1598 1496 51 0 0 chr1 132875322 132875499 -64319933 - L1Md_F2 LINE L1 -6257 359 183 5 1598 343 353 43 0 chr1 132875629 132875813 -64319619 - ERVL-E-int LTR ERVL -4235 1432 1241 5 1598 296 295 131 53 chr1 132876412 132876829 -64318603 - L1MA9 LINE L1 -232 6080 5641 5 1598 619 291 51 2 chr1 132877703 132877900 -64317532 + B3A SINE B2 1 203 -13 5 1598 2008 24 177 0 chr1 132878293 132878541 -64316891 - RLTR10B LTR ERVK 0 292 1 5 1598 1960 55 0 0 chr1 132878541 132878776 -64316656 - MMERVK10C-int LTR ERVK 0 7581 7347 5 1598 648 38 38 0 chr1 132878776 132878856 -64316576 - MMERVK10C-int LTR ERVK -2015 5566 5484 5 1598 379 0 106 0 chr1 132878870 132878917 -64316515 - MMERVK10C-int LTR ERVK -7305 276 225 5 1598 232 291 0 0 chr1 132878917 132878972 -64316460 - RLTR27 LTR ERVK -34 275 221 5 1598 1402 54 0 0 chr1 132878973 132879140 -64316292 - MMERVK10C-int LTR ERVK -7412 169 3 5 1598 2223 23 114 0 chr1 132879142 132879404 -64316028 - RLTR10B LTR ERVK 0 292 1 5 1598 25 51 0 0 chr1 132879497 132879536 -64315896 + AT_rich Low_complexity Low_complexity 1 39 0 5 1598 1744 238 113 29 chr1 132879559 132879882 -64315550 + Lx8 LINE L1 6587 6946 -527 5 1598 753 33 0 0 chr1 132879882 132879974 -64315458 + (TC)n Simple_repeat Simple_repeat 1 92 0 5 1598 1744 238 113 29 chr1 132879974 132879990 -64315442 + Lx8 LINE L1 6947 6955 -518 5 1598 207 0 0 0 chr1 132879990 132880013 -64315419 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1598 1744 238 113 29 chr1 132880013 132880160 -64315272 + Lx8 LINE L1 6956 7115 -358 5 1598 1160 197 5 0 chr1 132880362 132880575 -64314857 + B3 SINE B2 2 215 -1 5 1598 374 0 22 0 chr1 132881599 132881645 -64313787 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1598 4017 113 57 11 chr1 132881686 132882314 -64313118 - Lx LINE L1 0 6654 5998 5 1598 3461 34 2 0 chr1 132882327 132882734 -64312698 - L1Md_F2 LINE L1 -1 6581 6174 5 1598 1063 88 0 0 chr1 132882734 132882871 -64312561 - Lx LINE L1 -645 6009 5873 5 1598 5060 200 78 5 chr1 132883339 132884307 -64311125 - RMER1B Other Other -28 1038 1 5 1598 594 281 50 18 chr1 132884399 132884620 -64310812 + RLTR20D LTR ERVK 51 278 -290 5 1598 549 304 6 30 chr1 132884612 132884778 -64310654 + RLTR20D LTR ERVK 407 568 0 5 1598 1295 97 11 0 chr1 132885521 132885697 -64309735 + B2_Mm1t SINE B2 2 179 -14 5 1598 343 107 13 34 chr1 132885743 132885810 -64309622 + B2_Mm2 SINE B2 46 116 -82 5 1598 606 287 81 10 chr1 132885879 132886076 -64309356 + MTE2a LTR MaLR 169 379 0 5 1598 513 0 0 0 chr1 132886318 132886375 -64309057 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1598 22 0 0 0 chr1 132886390 132886412 -64309020 + AT_rich Low_complexity Low_complexity 1 22 0 5 1598 619 282 54 0 chr1 132886918 132887067 -64308365 - RSINE1 SINE B4 -6 159 3 5 1598 3381 246 82 48 chr1 132887106 132888137 -64307295 + Lx8 LINE L1 6407 7473 0 5 1598 491 56 14 0 chr1 132888274 132888345 -64307087 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1598 631 205 66 0 chr1 132889059 132889181 -64306251 + B1_Mur3 SINE Alu 3 132 -17 5 1598 921 116 0 0 chr1 132889192 132889365 -64306067 + (GA)n Simple_repeat Simple_repeat 2 174 0 5 1598 797 181 0 35 chr1 132889621 132889764 -64305668 + B1_Mur2 SINE Alu 3 140 -9 5 1598 195 69 0 0 chr1 132890076 132890105 -64305327 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1598 488 223 53 0 chr1 132891021 132891115 -64304317 + PB1D10 SINE Alu 6 104 -13 6 1598 200 180 160 0 chr1 132893740 132893790 -64301642 + MIR SINE MIR 19 76 -132 6 1598 1076 280 118 32 chr1 132894791 132895197 -64300235 + MLT2B2 LTR ERVL 1 441 -74 6 1598 378 0 0 0 chr1 132895201 132895243 -64300189 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1598 346 306 28 9 chr1 132898161 132898270 -64297162 + MIR SINE MIR 32 142 -120 6 1598 3185 115 66 12 chr1 132898277 132898780 -64296652 + Lx2 LINE L1 6467 6996 -1 6 1598 41 21 0 0 chr1 132898870 132898918 -64296514 + AT_rich Low_complexity Low_complexity 1 48 0 6 1598 396 0 0 0 chr1 132899403 132899447 -64295985 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1598 282 73 0 0 chr1 132900362 132900403 -64295029 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 1598 241 207 264 44 chr1 132900649 132900740 -64294692 - BC1_Mm scRNA scRNA -41 111 1 6 1598 315 123 43 58 chr1 132900766 132900835 -64294597 + RLTR28 LTR ERVL 3 70 -454 6 1598 1626 133 18 11 chr1 132900847 132901121 -64294311 + RLTR28 LTR ERVL 236 511 -13 6 1598 235 24 70 23 chr1 132901122 132901165 -64294267 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1598 281 174 0 14 chr1 132902304 132902374 -64293058 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1598 206 287 38 25 chr1 132902866 132902953 -64292479 - MIR SINE MIR -91 177 83 6 1598 1717 185 48 69 chr1 132902970 132903348 -64292084 - ORR1D1 LTR MaLR -4 370 1 6 1598 700 226 36 26 chr1 132903830 132904025 -64291407 + B3A SINE B2 1 197 -1 6 1598 276 30 0 0 chr1 132904257 132904290 -64291142 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 6 199 356 287 9 18 chr1 132906941 132907051 -64288381 - PB1D10 SINE Alu -4 113 5 6 1599 216 330 109 22 chr1 132907919 132908102 -64287330 - MIRc SINE MIR -52 216 3 6 1599 679 305 0 52 chr1 132908603 132908776 -64286656 - RSINE1 SINE B4 0 165 2 6 1599 428 252 78 0 chr1 132908896 132909011 -64286421 + Charlie1a DNA MER1_type 1332 1455 0 6 1599 899 283 115 31 chr1 132910022 132910405 -64285027 - Lx8 LINE L1 -5 7468 7054 6 1599 216 0 0 0 chr1 132910803 132910827 -64284605 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1599 755 253 20 44 chr1 132910855 132911058 -64284374 + B3A SINE B2 1 198 0 6 1599 1079 158 108 5 chr1 132911419 132911622 -64283810 + URR1B DNA MER1_type 1 224 -1 6 1599 398 328 73 11 chr1 132912491 132912682 -64282750 - B3 SINE B2 -13 203 1 6 1599 219 281 0 0 chr1 132912934 132912998 -64282434 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1599 345 271 35 12 chr1 132913177 132913263 -64282169 + PB1D10 SINE Alu 1 88 -29 6 1599 1886 27 5 0 chr1 132913341 132913564 -64281868 - L1Md_A LINE L1 -1 6581 6358 6 1599 23 0 0 0 chr1 132914405 132914428 -64281004 + AT_rich Low_complexity Low_complexity 1 23 0 6 1599 203 200 0 0 chr1 132916268 132916303 -64279129 + A-rich Low_complexity Low_complexity 1 35 0 6 1599 558 165 0 0 chr1 132916729 132916832 -64278600 + CT-rich Low_complexity Low_complexity 1 103 0 6 1599 21 0 0 0 chr1 132919776 132919797 -64275635 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 208 139 0 0 chr1 132920528 132920564 -64274868 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1599 243 253 40 13 chr1 132921904 132921980 -64273452 + B4A SINE B4 1 78 -214 6 1599 354 228 38 0 chr1 132922241 132922320 -64273112 - PB1D10 SINE Alu -9 108 27 6 1599 384 22 0 0 chr1 132922554 132922599 -64272833 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1599 183 42 0 0 chr1 132922762 132922786 -64272646 + (G)n Simple_repeat Simple_repeat 1 24 0 6 1599 222 273 43 43 chr1 132922794 132922886 -64272546 + B4A SINE B4 10 101 -191 6 1599 1190 117 126 5 chr1 132922930 132923128 -64272304 + RMER10A LTR ERVL 1 222 -220 6 1599 276 154 0 0 chr1 132923298 132923350 -64272082 + GA-rich Low_complexity Low_complexity 1 52 0 6 1599 182 294 107 102 chr1 132923864 132923980 -64271452 - MIR SINE MIR 0 262 148 6 1599 871 191 7 0 chr1 132923980 132924121 -64271311 - B1_Mur1 SINE Alu -6 143 2 6 1599 209 246 118 30 chr1 132924121 132924201 -64271231 - MIRc SINE MIR -117 151 65 6 1599 345 323 20 10 chr1 132924320 132924420 -64271012 + PB1D10 SINE Alu 10 110 -7 6 1599 365 169 48 26 chr1 132924445 132924532 -64270900 + PB1 SINE Alu 29 118 -2 6 1599 295 222 33 0 chr1 132924539 132924629 -64270803 - L1M2 LINE L1 -3178 2965 2873 6 1599 630 324 30 27 chr1 132924656 132924919 -64270513 - MLT1F1 LTR MaLR -291 278 15 6 1599 2693 67 0 0 chr1 132924919 132925246 -64270186 - ORR1A2 LTR MaLR 0 327 1 6 1599 709 331 49 113 chr1 132925425 132925813 -64269619 + MLT1A LTR MaLR 1 363 -11 6 1599 234 306 153 62 chr1 132926665 132926874 -64268558 + Charlie19a DNA Charlie 118 345 -41 6 1599 207 200 0 0 chr1 132927381 132927416 -64268016 + MIRm SINE MIR 224 258 -18 6 1599 752 196 0 0 chr1 132927444 132927577 -64267855 + B1_Mur4 SINE Alu 1 133 -17 6 1599 211 226 210 0 chr1 132928572 132928634 -64266798 - PB1 SINE Alu -8 119 45 6 1599 306 330 99 45 chr1 132928668 132928779 -64266653 - PB1D9 SINE Alu -1 119 3 6 1599 293 311 72 45 chr1 132928691 132928802 -64266630 - ID_B1 SINE B4 -45 179 66 6 1599 251 225 56 14 chr1 132928806 132928878 -64266554 - L2b LINE L2 -222 3153 3079 6 1599 771 156 149 27 chr1 132929909 132930121 -64265311 + MTD LTR MaLR 1 411 -8 6 1599 281 321 35 9 chr1 132930466 132930579 -64264853 - L2 LINE L2 -2498 921 806 6 1599 1422 11 17 0 chr1 132930810 132930986 -64264446 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 6 1599 228 43 21 42 chr1 132931337 132931385 -64264047 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 6 1599 424 278 67 28 chr1 132931981 132932159 -64263273 + Charlie10 DNA MER1_type 2636 2820 -2 6 1599 527 172 155 32 chr1 132932285 132932477 -64262955 + RMER10A LTR ERVL 1 263 -179 6 1599 494 294 96 6 chr1 132932892 132933070 -64262362 + RMER30 DNA MER1_type 2 195 -7 6 1599 49 80 0 0 chr1 132933323 132933435 -64261997 + AT_rich Low_complexity Low_complexity 1 112 0 6 1599 939 331 50 29 chr1 132933801 132934588 -64260844 + L1M2 LINE L1 2397 3199 -2944 6 1599 241 338 53 23 chr1 132934632 132934765 -64260667 + MLT1K LTR MaLR 442 578 -17 6 1599 199 295 131 62 chr1 132935215 132935345 -64260087 - L3 LINE CR1 -143 4346 4208 6 1599 757 250 57 49 chr1 132935530 132935774 -64259658 + MTD LTR MaLR 3 248 -171 6 1599 4460 231 62 19 chr1 132935779 132936922 -64258510 + Lx7 LINE L1 6176 7367 -329 6 1599 722 124 8 0 chr1 132936981 132937102 -64258330 + (GGGA)n Simple_repeat Simple_repeat 2 123 0 6 1599 414 253 0 0 chr1 132937102 132937185 -64258247 + MTD LTR MaLR 197 279 -140 6 1599 851 254 131 11 chr1 132937476 132937743 -64257689 + MTE-int LTR MaLR 1159 1457 -123 6 1599 661 248 141 19 chr1 132937760 132938079 -64257353 + MTEb LTR MaLR 1 365 -14 6 1599 348 103 0 0 chr1 132938710 132938768 -64256664 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1599 235 179 0 0 chr1 132939690 132939729 -64255703 - MTEb LTR MaLR -62 317 279 6 1599 318 261 88 15 chr1 132941269 132941355 -64254077 + PB1D7 SINE Alu 17 107 -13 6 1599 1194 63 0 0 chr1 132941440 132941583 -64253849 + B1_Mm SINE Alu 2 144 -3 6 1599 678 13 0 0 chr1 132941583 132941662 -64253770 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 1599 1301 236 203 66 chr1 132941744 132942257 -64253175 + Lx8 LINE L1 6880 7462 -11 6 1599 323 204 141 204 chr1 132943646 132943745 -64251687 + RSINE1 SINE B4 2 96 -69 6 1599 2341 106 22 8 chr1 132943745 132944106 -64251326 - Lx4A LINE L1 -2 7056 6691 6 1599 298 196 158 197 chr1 132944106 132944148 -64251284 + RSINE1 SINE B4 97 134 -31 6 1599 259 323 153 13 chr1 132944308 132944465 -64250967 + B4A SINE B4 1 179 -113 6 1599 230 319 138 26 chr1 132944859 132944975 -64250457 + B4 SINE B4 76 204 -88 6 1599 471 192 121 0 chr1 132944892 132944991 -64250441 + B1_Mur1 SINE Alu 21 131 -18 6 1599 333 0 0 0 chr1 132944991 132945028 -64250404 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1599 270 0 0 0 chr1 132945028 132945057 -64250375 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1599 278 305 90 28 chr1 132945064 132945209 -64250223 + B4A SINE B4 139 292 0 6 1599 285 51 0 0 chr1 132945355 132945394 -64250038 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1599 995 81 7 13 chr1 132945397 132945547 -64249885 - B1_Mur3 SINE Alu 0 149 1 6 1599 21 0 0 0 chr1 132946907 132946928 -64248504 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 185 108 0 26 chr1 132947152 132947190 -64248242 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1599 191 337 109 0 chr1 132948550 132948651 -64246781 + MIR SINE MIR 76 187 -75 6 1599 362 287 10 10 chr1 132948858 132948960 -64246472 + B3A SINE B2 70 171 -27 6 1599 207 288 0 15 chr1 132952044 132952111 -64243321 + MIR3 SINE MIR 109 174 -34 6 1599 512 68 14 0 chr1 132955412 132955485 -64239947 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1599 276 352 48 38 chr1 132955868 132956054 -64239378 + MLT1L LTR MaLR 70 257 -353 6 1599 212 245 19 0 chr1 132956605 132956658 -64238774 + (CAGG)n Simple_repeat Simple_repeat 4 57 0 6 1599 354 219 143 24 chr1 132957744 132957870 -64237562 + B1F SINE Alu 9 149 0 6 1599 273 119 0 0 chr1 132960746 132960788 -64234644 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1599 5889 60 4 0 chr1 132962085 132962855 -64232577 + L1Md_F2 LINE L1 5808 6580 -2 6 1599 468 219 29 0 chr1 132962951 132963056 -64232376 + RSINE1 SINE B4 1 108 -57 7 1599 383 36 36 0 chr1 132963071 132963127 -64232305 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 7 1599 875 223 43 24 chr1 132963188 132963399 -64232033 + B3 SINE B2 2 216 0 7 1599 864 206 129 70 chr1 132963908 132964237 -64231195 + ORR1E LTR MaLR 6 376 -3 7 1599 246 308 73 18 chr1 132964386 132964495 -64230937 - MIRb SINE MIR -107 161 47 7 1599 1943 157 50 14 chr1 132964629 132964990 -64230442 + MTC LTR MaLR 40 413 -8 7 1599 2212 180 105 17 chr1 132965373 132965898 -64229534 - RMER6-int LTR ERVK -2600 577 7 7 1599 1857 104 122 35 chr1 132965938 132966308 -64229124 - MYSERV6-int LTR ERVK -2286 6673 6272 7 1599 2573 164 20 82 chr1 132966445 132967088 -64228344 - MYSERV6-int LTR ERVK -3973 4986 4384 7 1599 5266 121 42 32 chr1 132967070 132967907 -64227525 - MYSERV6-int LTR ERVK -6876 2083 1235 7 1599 1129 55 7 0 chr1 132967907 132968053 -64227379 - B1_Mus1 SINE Alu 0 148 2 7 1599 5266 121 42 32 chr1 132968053 132968119 -64227313 - MYSERV6-int LTR ERVK -7725 1234 1171 7 1599 575 294 122 36 chr1 132968614 132968893 -64226539 + ORR1E LTR MaLR 48 350 -9 7 1599 202 267 77 39 chr1 132969073 132969151 -64226281 + L3 LINE CR1 3531 3611 -878 7 1599 220 281 205 29 chr1 132969343 132969548 -64225884 + MIR SINE MIR 22 262 0 7 1599 626 307 158 4 chr1 132969737 132970015 -64225417 - Tigger6b DNA MER2_type -1253 344 24 7 1599 385 209 47 0 chr1 132970240 132970326 -64225106 - U6 snRNA snRNA -6 101 12 7 1599 250 309 40 24 chr1 132970347 132970473 -64224959 + MER20 DNA MER1_type 31 158 -61 7 1599 338 0 24 0 chr1 132970786 132970828 -64224604 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1599 536 286 38 29 chr1 132971209 132971447 -64223985 + L1ME2 LINE L1 5621 5860 -304 7 1599 281 175 0 31 chr1 132971482 132971547 -64223885 + (CATA)n Simple_repeat Simple_repeat 4 66 0 7 1599 227 242 187 45 chr1 132971605 132971739 -64223693 + L1ME2 LINE L1 6014 6166 -278 7 1599 345 47 0 0 chr1 132972563 132972606 -64222826 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1599 1197 202 111 60 chr1 132973182 132973534 -64221898 + ORR1D2 LTR MaLR 1 370 0 7 1599 622 111 117 25 chr1 132974564 132974684 -64220748 + B1_Mur4 SINE Alu 20 150 0 7 1599 542 71 12 0 chr1 132974686 132974770 -64220662 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 7 1599 966 157 104 10 chr1 132974994 132975187 -64220245 + B3 SINE B2 2 212 -4 7 1599 21 36 0 0 chr1 132975191 132975219 -64220213 + AT_rich Low_complexity Low_complexity 1 28 0 7 1599 203 170 21 0 chr1 132975728 132975775 -64219657 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1599 315 172 34 17 chr1 132975903 132976021 -64219411 + (CAGAGA)n Simple_repeat Simple_repeat 2 121 0 7 1599 378 0 0 0 chr1 132976288 132976330 -64219102 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1599 759 216 82 34 chr1 132976427 132976633 -64218799 - B3 SINE B2 0 216 1 7 1599 239 300 0 0 chr1 132976893 132977003 -64218429 + (CA)n Simple_repeat Simple_repeat 1 110 0 7 1599 516 16 0 0 chr1 132977304 132977365 -64218067 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1599 939 210 43 19 chr1 132977652 132977861 -64217571 + B3 SINE B2 2 215 -1 7 1599 293 250 27 14 chr1 132979408 132979481 -64215951 + RSINE1 SINE B4 4 77 -88 7 1599 207 0 0 0 chr1 132979943 132979966 -64215466 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1599 429 299 26 0 chr1 132981764 132981881 -64213551 + PB1D7 SINE Alu 1 120 0 7 1599 202 160 39 20 chr1 132981983 132982034 -64213398 + L2a LINE L2 3117 3168 -219 7 1599 765 180 222 0 chr1 132982050 132982217 -64213215 + B3 SINE B2 3 206 -10 7 1599 336 148 0 0 chr1 132982260 132982321 -64213111 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 7 1599 354 352 101 9 chr1 132982331 132982549 -64212883 + L2a LINE L2 3189 3426 0 7 1599 244 188 172 0 chr1 132982871 132982935 -64212497 - RSINE1 SINE B4 -83 82 8 7 1599 351 0 0 0 chr1 132983053 132983092 -64212340 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1599 219 204 0 75 chr1 132984502 132984555 -64210877 - ID SINE ID -153 71 23 7 1599 409 149 60 36 chr1 132984562 132984729 -64210703 + (CTATG)n Simple_repeat Simple_repeat 3 173 0 7 1599 208 338 12 0 chr1 132987952 132988032 -64207400 - MER91A DNA Tip100 -112 84 4 7 1599 298 261 60 66 chr1 132991157 132991330 -64204102 + MIR3 SINE MIR 19 183 -25 7 1599 306 0 0 0 chr1 132991503 132991537 -64203895 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1599 235 269 0 0 chr1 132991544 132991596 -64203836 - B3A SINE B2 -67 131 80 7 1599 1123 96 62 6 chr1 132991909 132992087 -64203345 + B2_Mm2 SINE B2 6 193 -2 7 1599 29 78 0 0 chr1 132994130 132994194 -64201238 + GC_rich Low_complexity Low_complexity 1 64 0 7 1599 347 237 0 67 chr1 132995040 132995144 -64200288 + PB1D10 SINE Alu 20 116 -1 7 1599 195 42 0 0 chr1 132995726 132995750 -64199682 + (G)n Simple_repeat Simple_repeat 1 24 0 7 1599 1337 85 0 0 chr1 132996178 132996355 -64199077 + B2_Mm2 SINE B2 1 177 -18 7 1599 286 143 16 16 chr1 132996357 132996421 -64199011 + GA-rich Low_complexity Low_complexity 2 65 0 7 1599 380 281 114 51 chr1 132996722 132996898 -64198534 + RLTR23 LTR ERV1 244 430 0 7 1599 398 65 16 0 chr1 132997237 132997299 -64198133 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1599 360 339 15 0 chr1 132997427 132997557 -64197875 + MIRc SINE MIR 70 201 -67 7 1599 246 266 0 0 chr1 132997668 132997732 -64197700 + tRNA-Ala-GCA tRNA tRNA 1 64 -11 7 1599 545 252 14 14 chr1 132998098 132998243 -64197189 + B1F SINE Alu 1 145 -4 7 1599 656 319 39 13 chr1 132999089 132999318 -64196114 - 7SK RNA RNA -92 239 5 7 1599 862 149 14 0 chr1 132999466 132999607 -64195825 + B1_Mur4 SINE Alu 1 143 -7 7 1599 1119 83 0 0 chr1 132999611 132999767 -64195665 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 7 1599 442 144 22 11 chr1 132999770 132999861 -64195571 + GA-rich Low_complexity Low_complexity 1 92 0 7 1599 730 94 46 20 chr1 133001226 133001530 -64193902 + (CA)n Simple_repeat Simple_repeat 1 312 0 1 1599 443 276 22 80 chr1 133001533 133001671 -64193761 + B1F SINE Alu 18 147 -2 2 1599 890 36 9 0 chr1 133001756 133001866 -64193566 - B1_Mus1 SINE Alu 0 148 38 3 1599 273 283 173 67 chr1 133002012 133002266 -64193166 + ORR1E LTR MaLR 79 359 0 4 1599 288 0 0 0 chr1 133002573 133002605 -64192827 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 5 1599 183 42 0 0 chr1 133003250 133003274 -64192158 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1599 522 0 0 0 chr1 133003275 133003333 -64192099 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1599 423 250 36 0 chr1 133003412 133003496 -64191936 - B4A SINE B4 0 292 206 8 1599 1299 177 120 7 chr1 133003533 133003834 -64191598 - MTD LTR MaLR -84 335 1 9 1599 344 243 14 0 chr1 133003834 133003900 -64191532 - B4A SINE B4 -81 211 145 8 1599 1123 51 0 35 chr1 133004012 133004155 -64191277 - B1_Mus2 SINE Alu -9 138 1 1 1599 194 240 0 118 chr1 133005479 133005564 -64189868 + L2 LINE L2 2488 2562 -857 1 1599 815 300 23 45 chr1 133005686 133006039 -64189393 - L1MB1 LINE L1 -5 6163 5819 1 1599 2203 175 63 5 chr1 133006089 133006485 -64188947 + MTD LTR MaLR 1 419 0 1 1599 286 266 18 27 chr1 133006491 133006603 -64188829 - L1MB1 LINE L1 -377 5791 5681 1 1599 189 0 0 0 chr1 133007993 133008014 -64187418 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1599 204 40 0 0 chr1 133008330 133008355 -64187077 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1599 191 370 0 0 chr1 133008387 133008441 -64186991 - MIR SINE MIR -22 240 187 1 1599 225 0 0 0 chr1 133008662 133008687 -64186745 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1599 370 316 45 0 chr1 133008759 133008892 -64186540 + B1F SINE Alu 3 141 -8 1 1599 230 308 31 0 chr1 133008916 133008981 -64186451 + ID4_ SINE ID 1 67 -16 1 1599 438 20 0 0 chr1 133009054 133009105 -64186327 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1599 3377 31 8 5 chr1 133009792 133010187 -64185245 + MTA_Mm LTR MaLR 1 396 0 2 1599 228 163 0 0 chr1 133010498 133010541 -64184891 + GA-rich Low_complexity Low_complexity 3 45 0 2 1599 252 253 31 144 chr1 133010606 133010703 -64184729 - MIRc SINE MIR -166 110 22 2 1599 626 282 13 20 chr1 133011302 133011454 -64183978 - RSINE1 SINE B4 -11 154 4 2 1599 392 306 16 0 chr1 133011517 133011641 -64183791 + G-rich Low_complexity Low_complexity 1 126 0 2 1599 307 252 202 16 chr1 133011641 133011770 -64183662 + HAL1-3A_ME LINE L1 2285 2437 -421 2 1599 1681 36 0 0 chr1 133012812 133013004 -64182428 - B2_Mm1a SINE B2 0 193 2 2 1599 523 245 8 59 chr1 133014273 133014715 -64180717 + G-rich Low_complexity Low_complexity 1 419 0 2 1599 459 269 127 13 chr1 133015001 133015159 -64180273 - B3A SINE B2 -22 176 1 2 1599 334 325 51 86 chr1 133015463 133015638 -64179794 + LTR33 LTR ERVL 163 331 -184 3 1599 441 268 86 96 chr1 133015691 133015921 -64179511 - B3A SINE B2 -1 215 1 3 1599 285 98 0 0 chr1 133016472 133016513 -64178919 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1599 1068 142 28 0 chr1 133016513 133016678 -64178754 - B2_Mm1t SINE B2 -24 169 3 3 1599 405 0 0 0 chr1 133017865 133017910 -64177522 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1599 544 111 241 0 chr1 133017911 133018019 -64177413 - B1_Mur2 SINE Alu -13 136 3 3 1599 205 310 0 0 chr1 133018029 133018100 -64177332 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 3 1599 569 242 42 84 chr1 133018117 133018284 -64177148 - RSINE1 SINE B4 -4 161 2 3 1599 1233 41 0 7 chr1 133018384 133018531 -64176901 - B1_Mm SINE Alu 0 147 2 3 1599 230 348 19 102 chr1 133019790 133019947 -64175485 + B4 SINE B4 1 144 -148 3 1599 204 97 0 0 chr1 133020063 133020094 -64175338 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1599 574 156 0 13 chr1 133020143 133020250 -64175182 - B1_Mus2 SINE Alu 0 147 21 4 1599 937 175 118 20 chr1 133020841 133021045 -64174387 + URR1A DNA MER1_type 1 224 -2 4 1599 307 111 111 0 chr1 133021051 133021105 -64174327 - URR1A DNA MER1_type -131 95 36 4 1599 391 167 0 27 chr1 133021689 133021763 -64173669 - B1_Mus2 SINE Alu -67 80 9 4 1599 736 91 130 16 chr1 133021798 133021921 -64173511 - B1_Mus2 SINE Alu 0 147 11 4 1599 244 214 75 25 chr1 133021832 133021936 -64173496 - ORR1B1-int LTR MaLR -763 746 634 4 1599 405 263 43 28 chr1 133021921 133021932 -64173500 - ID_B1 SINE B4 -1 177 81 4 1599 243 0 0 0 chr1 133021936 133021963 -64173469 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1599 1144 61 0 7 chr1 133021963 133022111 -64173321 - B1_Mus1 SINE Alu -1 147 1 4 1599 244 214 75 25 chr1 133022111 133022125 -64173307 - ORR1B1-int LTR MaLR -876 633 622 4 1599 1345 139 28 5 chr1 133023277 133023493 -64171939 - URR1A DNA MER1_type 0 226 6 4 1599 636 206 83 51 chr1 133024733 133024936 -64170496 + B3 SINE B2 1 195 0 5 1599 388 271 298 10 chr1 133026916 133027121 -64168311 + B4A SINE B4 1 264 -28 5 1599 1744 125 191 6 chr1 133027144 133027473 -64167959 + ORR1B1 LTR MaLR 5 394 0 5 1599 495 240 112 0 chr1 133027609 133027734 -64167698 - RSINE1 SINE B4 -18 147 9 5 1599 806 189 7 0 chr1 133027760 133027903 -64167529 + B1_Mur4 SINE Alu 1 144 -6 5 1599 244 0 32 0 chr1 133027903 133027934 -64167498 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 5 1599 956 148 6 0 chr1 133027934 133028103 -64167329 + GA-rich Low_complexity Low_complexity 3 172 0 5 1599 1108 63 14 14 chr1 133028218 133028363 -64167069 + B1_Mm SINE Alu 2 146 -1 5 1599 361 229 74 33 chr1 133028577 133028699 -64166733 + MIRb SINE MIR 47 173 -95 5 1599 516 32 0 0 chr1 133028835 133028897 -64166535 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1599 1763 106 98 128 chr1 133029821 133030189 -64165243 + ORR1B2 LTR MaLR 1 357 -10 6 1599 626 124 208 32 chr1 133030284 133030409 -64165023 + B1_Mur3 SINE Alu 1 147 -2 6 1599 440 173 0 58 chr1 133030675 133030761 -64164671 + ID4_ SINE ID 1 81 -2 6 1599 296 260 0 0 chr1 133031660 133031710 -64163722 + RSINE1 SINE B4 1 50 -115 6 1599 330 96 0 0 chr1 133032105 133032157 -64163275 + B1_Mur3 SINE Alu 87 138 -11 6 1599 634 230 14 28 chr1 133032536 133032679 -64162753 + B1_Mus2 SINE Alu 5 145 -2 6 1599 665 149 9 0 chr1 133033123 133033230 -64162202 - B1_Mur3 SINE Alu 0 149 42 6 1599 243 197 0 76 chr1 133033178 133033244 -64162188 - 4.5SRNA scRNA scRNA -6 88 28 6 1599 534 281 16 71 chr1 133033279 133033312 -64162120 + ID_B1 SINE B4 50 223 -1 6 1599 881 143 7 26 chr1 133033312 133033463 -64161969 + B1_Mur2 SINE Alu 1 148 -1 6 1599 694 239 110 0 chr1 133035272 133035427 -64160005 + B3 SINE B2 38 209 -7 7 1599 314 180 40 7 chr1 133036516 133036643 -64158789 + B3A SINE B2 1 213 -3 7 1599 268 349 0 0 chr1 133036889 133036972 -64158460 + ID4_ SINE ID 1 83 0 7 1599 225 203 67 17 chr1 133037112 133037172 -64158260 + Arthur1 DNA Tip100 630 692 -3255 7 1599 646 123 30 32 chr1 133037334 133037865 -64157567 + (TG)n Simple_repeat Simple_repeat 1 529 0 7 1599 535 297 0 103 chr1 133037868 133038052 -64157380 - RSINE1 SINE B4 0 165 1 7 199 1038 281 125 65 chr1 133038075 133038673 -64156759 - MLT1F-int LTR MaLR -251 1238 605 7 1600 851 189 134 5 chr1 133038687 133038873 -64156559 - B3 SINE B2 -4 212 3 7 1600 254 250 114 8 chr1 133038901 133038987 -64156445 - PB1D7 SINE Alu -10 110 5 7 1600 273 329 12 0 chr1 133039050 133039132 -64156300 - ID4_ SINE ID 0 83 1 7 1600 1254 161 132 16 chr1 133039230 133039488 -64155944 + ORR1B2 LTR MaLR 1 288 -79 8 1600 1779 193 20 30 chr1 133039490 133039695 -64155737 + RMER17C LTR ERVK 1 201 -209 8 1600 384 40 0 0 chr1 133039695 133039745 -64155687 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1600 1779 193 20 30 chr1 133039745 133039944 -64155488 + RMER17C LTR ERVK 202 401 -9 8 1600 257 158 10 0 chr1 133039942 133039992 -64155440 + ORR1B2 LTR MaLR 288 343 -41 8 1600 233 100 0 0 chr1 133039989 133040019 -64155413 - PB1D9 SINE Alu -87 33 4 8 1600 271 207 0 49 chr1 133040019 133040073 -64155359 + RLTR25A LTR ERVK 522 572 -531 8 1600 633 76 109 0 chr1 133040020 133040112 -64155320 + B1_Mus2 SINE Alu 46 147 0 8 1600 372 83 0 0 chr1 133040130 133040178 -64155254 + ORR1B2 LTR MaLR 312 359 -8 8 1600 843 282 34 55 chr1 133040141 133040190 -64155242 - MT2B LTR ERVL -5 596 556 8 1600 369 0 0 0 chr1 133040190 133040231 -64155201 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 8 1600 843 252 134 33 chr1 133040231 133040521 -64154911 - MT2B LTR ERVL -46 555 72 8 1600 1523 186 23 70 chr1 133040494 133040812 -64154620 + RMER6B LTR ERVK 136 439 -22 8 1600 186 43 0 0 chr1 133040812 133040835 -64154597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1600 966 62 117 0 chr1 133040835 133040963 -64154469 - B1_Mus1 SINE Alu -2 146 4 9 1600 1523 186 23 70 chr1 133040963 133040985 -64154447 + RMER6B LTR ERVK 440 460 -1 8 1600 403 236 0 0 chr1 133040985 133041057 -64154375 + MYSERV6-int LTR ERVK 2 73 -8886 8 1600 2307 149 28 38 chr1 133041057 133041509 -64153923 + RMER16 LTR ERVK 1 533 0 9 1600 247 299 43 86 chr1 133041563 133041702 -64153730 - RLTR41 LTR ERV1 -62 384 252 9 1600 2792 153 58 55 chr1 133042180 133042709 -64152723 + MYSERV6-int LTR ERVK 67 603 -8356 8 1600 2315 103 0 55 chr1 133042709 133043057 -64152375 + ORR1A4 LTR MaLR 1 329 0 9 1600 4653 137 198 56 chr1 133043057 133043638 -64151794 + MYSERV6-int LTR ERVK 604 1256 -7703 8 1600 641 118 0 0 chr1 133043638 133043731 -64151701 + 4.5SRNA scRNA scRNA 1 93 -1 9 1600 1222 55 0 0 chr1 133043731 133043877 -64151555 + B1_Mus2 SINE Alu 1 146 -1 9 1600 4653 136 27 56 chr1 133043877 133044172 -64151260 + MYSERV6-int LTR ERVK 1257 1549 -7410 8 1600 372 296 15 140 chr1 133044172 133044372 -64151060 - L1MC2 LINE L1 -292 6052 5878 9 1600 1003 206 15 10 chr1 133044392 133044588 -64150844 - B3 SINE B2 -9 207 11 9 1600 525 288 66 119 chr1 133044589 133044967 -64150465 - MTD LTR MaLR -61 358 1 9 1600 910 115 142 24 chr1 133045011 133045180 -64150252 + B2_Mm2 SINE B2 2 190 -5 9 1600 430 343 7 49 chr1 133045975 133046119 -64149313 - RSINE1 SINE B4 -3 162 25 1 1600 1506 142 82 133 chr1 133046212 133046456 -64148976 + RMER17C LTR ERVK 1 225 -185 1 1600 1109 83 14 0 chr1 133046456 133046601 -64148831 - B1_Mm SINE Alu 0 147 1 1 1600 1506 142 82 133 chr1 133046601 133046785 -64148647 + RMER17C LTR ERVK 226 407 -3 1 1600 439 206 29 76 chr1 133046945 133047050 -64148382 + B1F SINE Alu 23 122 -27 1 1600 4162 35 14 0 chr1 133047058 133047544 -64147888 - MT2_Mm LTR ERVL 0 493 1 1 1600 263 294 0 0 chr1 133047569 133047620 -64147812 + ID4_ SINE ID 9 59 -24 1 1600 610 13 25 0 chr1 133047621 133047700 -64147732 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1600 2905 65 21 0 chr1 133047946 133048292 -64147140 + MTB LTR MaLR 1 354 -46 1 1600 1340 211 163 17 chr1 133048292 133048654 -64146778 - MTD LTR MaLR -2 417 3 1 1600 205 316 38 67 chr1 133048693 133048798 -64146634 + MIRb SINE MIR 48 149 -119 1 1600 189 147 0 0 chr1 133049075 133049109 -64146323 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1 1600 1176 63 0 0 chr1 133051490 133051632 -64143800 - B1_Mus1 SINE Alu -5 143 2 1 1600 234 0 0 0 chr1 133052326 133052352 -64143080 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1600 2200 81 13 7 chr1 133052781 133053175 -64142257 - L1Md_F2 LINE L1 0 6582 6281 1 1600 9087 9 0 0 chr1 133053175 133054153 -64141279 + MERVL-int LTR ERVL 2496 3473 -2012 1 1600 745 89 20 0 chr1 133054153 133054254 -64141178 - L1Md_F2 LINE L1 -320 6262 6160 1 1600 1181 75 0 0 chr1 133054261 133054408 -64141024 - B1_Mm SINE Alu 0 147 1 1 1600 1523 21 32 11 chr1 133054417 133054605 -64140827 - B2_Mm1a SINE B2 0 193 2 1 1600 267 312 75 11 chr1 133055350 133055444 -64139988 + PB1 SINE Alu 19 118 -9 1 1600 216 0 0 0 chr1 133055478 133055502 -64139930 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1600 299 169 22 33 chr1 133055991 133056083 -64139349 + CT-rich Low_complexity Low_complexity 3 93 0 1 1600 652 190 49 8 chr1 133056083 133056205 -64139227 - ID_B1 SINE B4 -21 203 77 1 1600 837 161 6 80 chr1 133056205 133056367 -64139065 - B1_Mur4 SINE Alu 0 150 1 1 1600 195 42 0 0 chr1 133056522 133056546 -64138886 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1600 429 20 0 0 chr1 133056546 133056595 -64138837 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1600 252 0 0 0 chr1 133056637 133056665 -64138767 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1600 342 0 0 0 chr1 133056707 133056745 -64138687 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1600 400 253 24 85 chr1 133057495 133057659 -64137773 + RSINE1 SINE B4 3 156 -9 1 1600 1065 76 6 60 chr1 133058645 133058827 -64136605 + B2_Mm2 SINE B2 14 185 -10 1 1600 1177 48 0 0 chr1 133058985 133059132 -64136300 - B1_Mus2 SINE Alu 0 147 1 1 1600 184 73 49 0 chr1 133059197 133059208 -64136224 + (TTTA)n Simple_repeat Simple_repeat 2 12 0 1 1600 1220 27 0 0 chr1 133059208 133059355 -64136077 - B1_Mus2 SINE Alu 0 147 1 1 1600 184 73 49 0 chr1 133059355 133059384 -64136048 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1600 518 207 197 22 chr1 133059750 133059928 -64135504 - MER3 DNA MER1_type 0 209 1 1 1600 1171 48 0 0 chr1 133060384 133060531 -64134901 - B1_Mm SINE Alu 0 147 1 1 1600 570 173 153 116 chr1 133060553 133060743 -64134689 - B3A SINE B2 -1 197 1 1 1600 213 65 0 0 chr1 133060779 133060810 -64134622 - B3 SINE B2 -184 32 2 1 1600 543 253 103 0 chr1 133061867 133062013 -64133419 + RSINE1 SINE B4 3 163 -2 1 1600 1143 68 0 0 chr1 133062563 133062709 -64132723 - B1_Mus2 SINE Alu 0 147 2 1 1600 495 299 76 40 chr1 133063096 133063347 -64132085 + B4A SINE B4 33 292 0 1 1600 245 199 143 29 chr1 133063479 133063619 -64131813 + ORR1B1-int LTR MaLR 604 759 -750 1 1600 978 75 0 0 chr1 133063520 133063654 -64131778 + B1_Mus1 SINE Alu 15 148 0 1 1600 311 291 94 98 chr1 133064026 133064292 -64131140 + B4 SINE B4 43 276 -16 1 1600 266 247 22 90 chr1 133064834 133064923 -64130509 + ID4 SINE ID 1 83 0 1 1600 248 286 61 37 chr1 133065450 133065615 -64129817 + MIRb SINE MIR 90 262 0 1 1600 188 273 0 18 chr1 133065804 133065860 -64129572 + L3 LINE CR1 4384 4438 -51 1 1600 264 30 0 0 chr1 133065870 133065903 -64129529 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1600 1035 51 14 7 chr1 133065924 133066062 -64129370 - B1_Mm SINE Alu -8 139 1 1 1600 921 223 24 24 chr1 133066100 133066307 -64129125 - B3 SINE B2 0 216 10 1 1600 604 238 0 26 chr1 133066509 133066660 -64128772 - RSINE1 SINE B4 -15 150 4 1 1600 506 245 29 7 chr1 133066727 133066867 -64128565 + B1F2 SINE Alu 7 149 0 1 1600 239 116 0 23 chr1 133066871 133066915 -64128517 + L1MC5 LINE L1 7701 7743 -218 1 1600 325 306 57 13 chr1 133066927 133067086 -64128346 + L1MC5 LINE L1 7718 7883 -78 1 1600 693 219 0 42 chr1 133067102 133067245 -64128187 - B1_Mur1 SINE Alu -11 138 2 1 1600 322 316 90 63 chr1 133067796 133067985 -64127447 + Tigger5 DNA MER2_type 41 234 -2172 1 1600 1191 155 0 50 chr1 133068073 133068291 -64127141 - B3 SINE B2 -9 207 1 1 1600 271 221 57 29 chr1 133068291 133068361 -64127071 + Tigger5 DNA MER2_type 2335 2406 0 1 1600 275 367 18 10 chr1 133068574 133068709 -64126723 - MIRb SINE MIR -105 163 22 1 1600 1156 196 14 0 chr1 133069400 133069620 -64125812 + URR1B DNA MER1_type 1 223 -2 1 1600 190 116 0 44 chr1 133070828 133070873 -64124559 + GA-rich Low_complexity Low_complexity 1 43 0 1 1600 322 224 261 77 chr1 133071365 133071433 -64123999 - L1_Rod LINE L1 -525 5322 5260 1 1600 1104 55 0 27 chr1 133071433 133071583 -64123849 - B1_Mus2 SINE Alu 0 147 2 1 1600 322 224 261 77 chr1 133071583 133071867 -64123565 - L1_Rod LINE L1 -588 5259 4905 1 1600 227 352 25 0 chr1 133071935 133072057 -64123375 - L1_Rod LINE L1 -6968 204 80 1 1600 234 283 8 168 chr1 133072098 133072217 -64123215 + MT2B LTR ERVL 153 252 -349 1 1600 541 204 37 0 chr1 133072131 133072239 -64123193 + B1_Mus1 SINE Alu 9 120 -28 1 1600 342 0 0 0 chr1 133072242 133072280 -64123152 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1600 590 289 0 7 chr1 133072296 133072449 -64122983 - RSINE1 SINE B4 -13 152 1 1 1600 221 211 19 0 chr1 133073230 133073282 -64122150 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1600 251 177 47 31 chr1 133078944 133079008 -64116424 + MIRb SINE MIR 101 165 -103 1 1600 405 336 26 13 chr1 133081530 133081684 -64113748 - MER5B DNA MER1_type -21 157 2 1 1600 499 244 158 0 chr1 133082266 133082393 -64113039 + B1F2 SINE Alu 2 148 -1 1 1600 339 261 80 9 chr1 133083611 133083723 -64111709 - MER58B DNA MER1_type 0 341 222 1 1600 861 217 20 45 chr1 133084049 133084247 -64111185 - MTE2a LTR MaLR -9 370 178 1 1600 255 93 0 0 chr1 133084249 133084292 -64111140 + (CAT)n Simple_repeat Simple_repeat 2 44 0 1 1600 558 193 92 0 chr1 133084293 133084412 -64111020 - B1_Mur2 SINE Alu -10 139 10 1 1600 383 260 69 97 chr1 133084408 133084553 -64110879 - MTE2a LTR MaLR -219 160 20 1 1600 341 267 0 11 chr1 133085259 133085350 -64110082 + MIR3 SINE MIR 85 174 -34 1 1600 339 300 95 51 chr1 133086977 133087046 -64108386 - ORSL DNA Tip100 -3 272 206 1 1600 1087 83 0 0 chr1 133087046 133087191 -64108241 + B1_Mus2 SINE Alu 1 145 -2 1 1600 197 33 0 32 chr1 133087191 133087222 -64108210 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 1600 339 300 95 51 chr1 133087222 133087288 -64108144 - ORSL DNA Tip100 -70 205 131 1 1600 603 262 54 12 chr1 133087292 133087458 -64107974 + B4A SINE B4 2 174 -118 1 1600 559 228 281 2 chr1 133087865 133088190 -64107242 - MTD LTR MaLR -20 399 4 1 1600 394 289 196 29 chr1 133088203 133088509 -64106923 + L1MB3 LINE L1 5546 5902 -410 1 1600 270 338 0 12 chr1 133088593 133088604 -64106828 + ID4_ SINE ID 1 78 -3 1 1600 272 269 0 15 chr1 133088604 133088672 -64106760 + tRNA-Ala-GCY_ tRNA tRNA 6 72 -3 1 1600 266 227 40 40 chr1 133088674 133088775 -64106657 + L1MB3 LINE L1 6055 6155 -28 1 1600 223 235 20 0 chr1 133088806 133088857 -64106575 + ID4 SINE ID 32 83 0 1 1600 237 33 0 0 chr1 133090174 133090204 -64105228 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1600 228 67 0 0 chr1 133090736 133090766 -64104666 + (CATA)n Simple_repeat Simple_repeat 3 32 0 1 1600 3390 284 46 24 chr1 133090766 133091856 -64103576 + Lx9 LINE L1 6347 7460 -184 1 1600 267 378 26 26 chr1 133091860 133091951 -64103481 + RLTR22_Mur LTR ERVK 1311 1398 -450 1 1600 186 43 0 0 chr1 133091951 133091974 -64103458 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1 1600 267 378 26 26 chr1 133091974 133092034 -64103398 + RLTR22_Mur LTR ERVK 1399 1462 -386 1 1600 1225 88 50 0 chr1 133094585 133094766 -64100666 + B2_Mm2 SINE B2 1 190 -5 1 1600 1327 86 16 0 chr1 133098831 133099018 -64096414 - B2_Mm2 SINE B2 -5 190 1 1 1600 1889 125 9 46 chr1 133099117 133099445 -64095987 - Lx3B LINE L1 0 6973 6658 1 1600 252 111 0 0 chr1 133099739 133099784 -64095648 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 1 1600 752 206 68 11 chr1 133100185 133100362 -64095070 - B3 SINE B2 -23 193 7 1 1600 843 89 0 31 chr1 133100376 133100504 -64094928 - ORR1A4 LTR MaLR 0 329 206 1 1600 688 325 102 4 chr1 133100610 133100876 -64094556 + B4A SINE B4 1 292 0 1 1600 306 0 0 0 chr1 133101010 133101044 -64094388 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1600 475 230 103 29 chr1 133102376 133102618 -64092814 + L1MEc LINE L1 1198 1457 -4943 1 1600 813 116 61 23 chr1 133102618 133102750 -64092682 + B1_Mm SINE Alu 4 140 -7 1 1600 774 282 48 11 chr1 133103140 133103409 -64092023 + B4A SINE B4 4 282 -10 1 1600 487 139 26 53 chr1 133103510 133103624 -64091808 + Lx4B LINE L1 6946 7056 -2 1 1600 293 325 53 5 chr1 133103629 133103682 -64091750 + L1MEc LINE L1 2443 2500 -3819 1 1600 428 212 0 12 chr1 133103682 133103763 -64091669 + ID4 SINE ID 4 83 0 1 1600 293 325 53 5 chr1 133103763 133103916 -64091516 + L1MEc LINE L1 2501 2659 -3660 1 1600 477 226 0 0 chr1 133103971 133104086 -64091346 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1600 654 239 202 5 chr1 133104856 133105049 -64090383 + B4 SINE B4 59 289 -3 2 1600 303 279 0 19 chr1 133105052 133105209 -64090223 + (CA)n Simple_repeat Simple_repeat 1 154 0 2 1600 444 37 0 0 chr1 133106099 133106153 -64089279 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1600 549 0 0 0 chr1 133106782 133106843 -64088589 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1600 362 303 123 48 chr1 133106908 133107095 -64088337 - MER20 DNA MER1_type -3 216 16 2 1600 735 177 0 60 chr1 133107249 133107399 -64088033 + B1_Mus1 SINE Alu 2 142 -6 2 1600 215 231 0 37 chr1 133107558 133107612 -64087820 + A-rich Low_complexity Low_complexity 124 175 0 2 1600 287 342 46 60 chr1 133108067 133108375 -64087057 + L2c LINE L2 3066 3372 -15 2 1600 1684 185 112 30 chr1 133110419 133110594 -64084838 - MTD LTR MaLR -2 417 226 2 1600 1470 171 69 89 chr1 133110594 133110985 -64084447 + ORR1C2 LTR MaLR 1 383 -1 2 1600 1684 185 112 30 chr1 133110985 133111176 -64084256 - MTD LTR MaLR -194 225 21 2 1600 293 206 186 52 chr1 133111813 133111910 -64083522 + ID_B1 SINE B4 70 179 -45 2 1600 432 169 198 10 chr1 133111834 133111930 -64083502 + PB1D9 SINE Alu 7 120 0 2 1600 1060 202 224 65 chr1 133112442 133112571 -64082861 - RMER6B LTR ERVK 0 461 345 2 1600 3394 43 5 0 chr1 133112571 133112965 -64082467 - MTA_Mm LTR MaLR 0 396 1 2 1600 1060 202 224 65 chr1 133112965 133113233 -64082199 - RMER6B LTR ERVK -117 344 1 2 1600 836 125 22 0 chr1 133113249 133113385 -64082047 + B1_Mus2 SINE Alu 6 144 -3 2 1600 385 323 110 10 chr1 133115434 133115634 -64079798 - L1MA9 LINE L1 -416 5896 5677 2 1600 385 301 80 7 chr1 133115669 133115806 -64079626 + RSINE1 SINE B4 1 147 -18 2 1600 662 315 107 7 chr1 133115822 133116113 -64079319 - MLT1C LTR MaLR -102 365 46 2 1600 290 337 90 11 chr1 133116974 133117153 -64078279 + MIR SINE MIR 34 230 -38 2 1600 286 333 113 0 chr1 133117866 133118007 -64077425 + MIR SINE MIR 106 262 0 2 1600 782 234 118 118 chr1 133118490 133118819 -64076613 + RMER15 LTR ERVL 238 566 -9 2 1600 2657 105 10 7 chr1 133119253 133119656 -64075776 + MTC LTR MaLR 1 404 -17 2 1600 856 192 34 11 chr1 133119657 133119836 -64075596 + RLTR18B LTR ERVK 1 183 -329 2 1600 1376 258 91 27 chr1 133119838 133120212 -64075220 + RLTR18B LTR ERVK 110 507 -5 2 1600 1179 82 0 0 chr1 133120361 133120507 -64074925 - B1_Mus2 SINE Alu -1 146 1 2 1600 443 289 101 0 chr1 133120572 133120731 -64074701 - L1MC1 LINE L1 -69 6264 6090 2 1600 1153 51 13 6 chr1 133120805 133120964 -64074468 - B2_Mm2 SINE B2 -27 168 9 2 1600 1551 72 0 5 chr1 133121031 133121226 -64074206 + B2_Mm2 SINE B2 2 195 0 2 1600 1054 207 46 15 chr1 133121240 133121500 -64073932 - L1MC1 LINE L1 -414 5919 5652 2 1600 219 349 49 98 chr1 133121923 133122187 -64073245 + MIRb SINE MIR 9 259 -9 2 1600 339 319 20 55 chr1 133122224 133122370 -64073062 - B1F1 SINE Alu -5 144 4 2 1600 344 246 193 8 chr1 133124532 133124651 -64070781 + B1F SINE Alu 3 143 -6 2 1600 229 196 0 0 chr1 133124841 133124887 -64070545 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1600 405 0 0 0 chr1 133125202 133125247 -64070185 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1600 832 100 29 0 chr1 133126234 133126374 -64069058 + URR1A DNA MER1_type 83 226 0 2 1600 555 56 0 0 chr1 133127995 133128066 -64067366 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1600 2524 147 6 155 chr1 133128221 133128769 -64066663 - RMER4A LTR ERVK 0 466 1 2 1600 318 250 55 91 chr1 133131376 133131387 -64064045 + MT2B2 LTR ERVL 169 209 -375 2 1600 479 155 12 12 chr1 133131387 133131472 -64063960 + PB1D10 SINE Alu 16 100 -17 2 1600 318 250 55 91 chr1 133131472 133131486 -64063946 + MT2B2 LTR ERVL 210 274 -310 2 1600 226 338 15 0 chr1 133131473 133131541 -64063891 + ID4_ SINE ID 14 82 -1 2 1600 256 328 17 39 chr1 133133288 133133466 -64061966 + (CATA)n Simple_repeat Simple_repeat 4 177 0 2 1600 3311 55 5 10 chr1 133133728 133134130 -64061302 + MTB LTR MaLR 1 400 0 2 1600 270 0 0 0 chr1 133134638 133134668 -64060764 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1600 399 315 19 0 chr1 133134671 133134779 -64060653 - B4A SINE B4 -182 110 1 2 1600 261 119 0 0 chr1 133135367 133135409 -64060023 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1600 666 254 192 17 chr1 133138063 133138303 -64057129 - B4A SINE B4 -7 285 4 2 1600 417 278 82 68 chr1 133138859 133139079 -64056353 - MIR SINE MIR -7 255 33 2 1600 540 192 77 148 chr1 133139114 133139310 -64056122 - B4 SINE B4 -110 182 1 2 1600 195 42 0 0 chr1 133141799 133141823 -64053609 + (CGGGG)n Simple_repeat Simple_repeat 5 28 0 2 1600 305 256 122 0 chr1 133142447 133142537 -64052895 + MER45A DNA Tip100 68 168 -10 2 1600 356 321 127 5 chr1 133142814 133143011 -64052421 + MER2 DNA MER2_type 2 222 -123 2 1600 424 212 164 15 chr1 133143557 133143691 -64051741 - MER5A DNA MER1_type -35 154 1 2 1600 378 0 0 0 chr1 133144612 133144654 -64050778 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1600 202 200 0 0 chr1 133145037 133145077 -64050355 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 2 1600 309 255 117 0 chr1 133145232 133145326 -64050106 - MLT1I LTR MaLR 0 411 307 2 1600 238 335 169 27 chr1 133145609 133145793 -64049639 - L2a LINE L2 0 3426 3217 2 1600 984 179 183 5 chr1 133145837 133146028 -64049404 - URR1B DNA MER1_type 0 225 1 2 1600 384 22 0 0 chr1 133147320 133147365 -64048067 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1600 193 130 65 0 chr1 133147827 133147873 -64047559 + CT-rich Low_complexity Low_complexity 3 51 0 2 1600 1501 145 257 22 chr1 133147998 133148139 -64047293 + ORR1C2 LTR MaLR 1 173 -211 2 1600 189 0 0 0 chr1 133148139 133148160 -64047272 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2 1600 1501 145 257 22 chr1 133148160 133148329 -64047103 + ORR1C2 LTR MaLR 174 384 0 2 1600 236 254 73 15 chr1 133148345 133148413 -64047019 + B1F SINE Alu 77 148 -1 2 1600 234 256 44 44 chr1 133148672 133148762 -64046670 - MER5A DNA MER1_type -52 137 48 2 1600 3137 61 20 0 chr1 133149509 133149901 -64045531 + MTB LTR MaLR 1 400 0 2 1600 243 256 177 24 chr1 133152073 133152197 -64043235 + MER5B DNA MER1_type 20 162 -16 2 1600 198 310 0 27 chr1 133152302 133152375 -64043057 + L3b LINE CR1 227 297 -185 2 1600 844 186 0 0 chr1 133152533 133152689 -64042743 + ORR1D1 LTR MaLR 1 156 -218 2 1600 948 153 14 0 chr1 133152689 133152833 -64042599 + B1_Mus2 SINE Alu 1 146 -1 2 1600 182 291 0 35 chr1 133153998 133154055 -64041377 - L3b LINE CR1 -191 291 237 2 1600 313 237 79 71 chr1 133155026 133155153 -64040279 + MER5B DNA MER1_type 1 128 -50 2 1600 310 332 50 28 chr1 133155376 133155553 -64039879 + MIR3 SINE MIR 1 186 -90 2 1600 874 215 113 0 chr1 133157202 133157388 -64038044 + URR1B DNA MER1_type 17 223 -2 2 1600 182 291 88 12 chr1 133157762 133157842 -64037590 + MIR SINE MIR 101 186 -76 2 1600 994 142 0 0 chr1 133157842 133157983 -64037449 - B1_Mur1 SINE Alu -7 142 2 2 1600 743 234 76 19 chr1 133158318 133158706 -64036726 + Charlie5 DNA MER1_type 2263 2623 -1 2 1600 807 283 76 25 chr1 133159082 133159358 -64036074 + B4A SINE B4 1 290 -2 2 1600 980 156 0 6 chr1 133159379 133159560 -64035872 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1600 423 0 0 0 chr1 133160131 133160178 -64035254 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1600 302 223 319 9 chr1 133160701 133160814 -64034618 + B1_Mur1 SINE Alu 1 148 -1 2 1600 194 98 0 47 chr1 133160824 133160867 -64034565 + (TAAAAA)n Simple_repeat Simple_repeat 6 46 0 2 1600 824 252 43 10 chr1 133161087 133161295 -64034137 + B3 SINE B2 2 216 0 2 1600 774 203 7 7 chr1 133161308 133161452 -64033980 - B1_Mur3 SINE Alu -1 148 5 2 1600 312 223 24 16 chr1 133161496 133161619 -64033813 + (TCTA)n Simple_repeat Simple_repeat 4 127 0 2 1600 380 214 0 0 chr1 133161626 133161696 -64033736 - ID4 SINE ID -6 77 8 2 1600 468 0 0 0 chr1 133163626 133163678 -64031754 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1600 250 243 100 50 chr1 133163794 133163954 -64031478 - Lx7 LINE L1 0 7696 7529 2 1600 615 284 32 0 chr1 133163977 133164167 -64031265 - Lx7 LINE L1 -366 7330 7135 2 1600 295 91 18 35 chr1 133164179 133164236 -64031196 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 2 1600 452 230 100 31 chr1 133164236 133164366 -64031066 - B1_Mur2 SINE Alu -1 148 10 2 1600 368 194 140 0 chr1 133167976 133168069 -64027363 + PB1D10 SINE Alu 3 108 -9 2 1601 714 220 58 39 chr1 133170545 133170753 -64024679 + B3 SINE B2 4 215 -1 2 1601 970 241 39 0 chr1 133170769 133170976 -64024456 + B3 SINE B2 1 215 -1 2 1601 303 190 0 0 chr1 133171080 133171138 -64024294 - PB1D10 SINE Alu -20 97 40 2 1601 286 325 76 28 chr1 133171189 133171480 -64023952 - L1MB2 LINE L1 -51 6120 5816 2 1601 225 24 23 45 chr1 133172124 133172168 -64023264 + (CCCCCA)n Simple_repeat Simple_repeat 3 45 0 2 1601 206 278 102 17 chr1 133173281 133173387 -64022045 - MIRc SINE MIR -127 141 21 2 1601 1165 49 28 0 chr1 133174129 133174272 -64021160 - B1_Mm SINE Alu 0 147 1 2 1601 485 270 122 39 chr1 133174294 133174498 -64020934 - ID_B1 SINE B4 0 224 4 2 1601 416 205 134 20 chr1 133174523 133174672 -64020760 + Lx2B LINE L1 6834 6999 -1 2 1601 285 197 0 0 chr1 133176148 133176209 -64019223 + CT-rich Low_complexity Low_complexity 2 62 0 2 1601 1280 11 7 42 chr1 133177834 133178117 -64017315 + (TG)n Simple_repeat Simple_repeat 1 273 0 2 1601 260 261 8 0 chr1 133178268 133178398 -64017034 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 1601 1445 78 28 24 chr1 133178398 133178609 -64016823 - RMER6A LTR ERVK -544 212 1 3 1601 540 0 0 0 chr1 133179369 133179429 -64016003 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1601 625 183 39 3 chr1 133179478 133179616 -64015816 - B1_Mur2 SINE Alu -9 140 2 3 1601 209 284 95 0 chr1 133180091 133180165 -64015267 + L2 LINE L2 2368 2448 -971 3 1601 346 259 141 0 chr1 133180247 133180332 -64015100 - PB1 SINE Alu -30 97 1 3 1601 274 321 46 28 chr1 133180332 133180358 -64015074 - ID SINE ID -142 82 55 3 1601 337 182 45 15 chr1 133180529 133180596 -64014836 + B1F SINE Alu 2 70 -79 3 1601 603 302 122 10 chr1 133181326 133181620 -64013812 + Lx8 LINE L1 7105 7431 -42 3 1601 439 188 14 0 chr1 133181871 133181940 -64013492 + PB1D9 SINE Alu 5 74 -46 3 1601 880 231 21 27 chr1 133182310 133182497 -64012935 + B3 SINE B2 3 188 -28 3 1601 378 147 0 0 chr1 133182563 133182631 -64012801 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 3 1601 647 180 68 30 chr1 133182645 133182777 -64012655 - B1_Mur4 SINE Alu -13 137 1 3 1601 225 300 0 0 chr1 133185440 133185500 -64009932 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1601 1018 282 86 68 chr1 133186463 133186831 -64008601 + Lx8 LINE L1 6983 7361 -112 3 1601 387 0 0 0 chr1 133186831 133186874 -64008558 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1601 1018 282 86 68 chr1 133186874 133186973 -64008459 + Lx8 LINE L1 7362 7458 -15 3 1601 245 297 0 0 chr1 133187100 133187174 -64008258 + L1ME2z LINE L1 6356 6429 -15 3 1601 292 287 0 102 chr1 133187726 133187813 -64007619 - ID4_ SINE ID -62 90 12 3 1601 1011 254 92 23 chr1 133188609 133188871 -64006561 - B4A SINE B4 -8 284 5 3 1601 342 325 8 50 chr1 133190919 133191039 -64004393 - L2c LINE L2 -219 3168 3054 3 1601 442 198 141 55 chr1 133194130 133194258 -64001174 + B1F SINE Alu 1 139 -10 3 1601 1642 144 208 9 chr1 133194258 133194594 -64000838 + MTC LTR MaLR 19 421 0 3 1601 297 222 0 100 chr1 133195364 133195454 -63999978 - ID4_ SINE ID 0 83 3 3 1601 348 258 78 31 chr1 133195672 133195800 -63999632 + MIR SINE MIR 110 243 -19 3 1601 255 293 264 0 chr1 133198126 133198266 -63997166 - MER5A DNA MER1_type -5 184 8 3 1601 39696 58 1 23 chr1 133198691 133205501 -63989931 - L1Md_T LINE L1 0 6582 99 3 1601 492 149 0 0 chr1 133208092 133208166 -63987266 + ORR1C1 LTR MaLR 1 74 -304 3 1601 681 101 20 0 chr1 133208167 133208266 -63987166 + PB1D9 SINE Alu 9 109 -11 3 1601 359 205 225 16 chr1 133208266 133208296 -63987136 + B4 SINE B4 94 249 -43 3 1601 1361 149 25 105 chr1 133208285 133208562 -63986870 + ORR1C1 LTR MaLR 61 315 -63 3 1601 235 284 135 19 chr1 133209012 133209116 -63986316 - PB1D10 SINE Alu -1 116 1 3 1601 856 262 110 31 chr1 133209514 133209808 -63985624 + MTD LTR MaLR 1 303 -97 3 1601 795 282 63 60 chr1 133209814 133210195 -63985237 - L1MA4 LINE L1 -443 5857 5476 3 1601 975 261 78 18 chr1 133210227 133210508 -63984924 - Lx6 LINE L1 -27 7433 7136 3 1601 363 44 0 0 chr1 133210588 133210633 -63984799 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1601 1284 267 23 11 chr1 133210889 133211241 -63984191 - L1MB5 LINE L1 -47 6127 5772 3 1601 1442 68 11 0 chr1 133211558 133211749 -63983683 - B2_Mm1a SINE B2 0 193 1 3 1601 290 311 132 37 chr1 133212374 133212723 -63982709 - Charlie8 DNA MER1_type -2006 422 1 3 1601 252 350 128 73 chr1 133213060 133213334 -63982098 + L2b LINE L2 2581 2869 -550 3 1601 275 350 115 56 chr1 133213316 133213637 -63981795 + L2b LINE L2 3085 3424 -2 3 1601 2014 171 103 0 chr1 133215021 133215401 -63980031 + MTD LTR MaLR 1 419 0 3 1601 423 0 0 0 chr1 133215626 133215673 -63979759 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1601 220 246 123 0 chr1 133217778 133217843 -63977589 - MIRc SINE MIR -69 199 127 3 1601 225 94 0 0 chr1 133218838 133218870 -63976562 + (CAT)n Simple_repeat Simple_repeat 2 33 0 3 1601 350 193 7 16 chr1 133218921 133218989 -63976443 - RSINE1 SINE B4 -218 74 4 3 1601 27 0 0 0 chr1 133219424 133219451 -63975981 + AT_rich Low_complexity Low_complexity 1 27 0 3 1601 203 338 231 9 chr1 133219593 133219930 -63975502 + L2a LINE L2 2936 3347 -79 3 1601 205 189 0 0 chr1 133219957 133219994 -63975438 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 3 1601 429 20 0 0 chr1 133220990 133221040 -63974392 + (CCA)n Simple_repeat Simple_repeat 3 52 0 3 1601 469 311 23 87 chr1 133221273 133221583 -63973849 - B4A SINE B4 -2 290 1 3 1601 663 241 131 9 chr1 133222649 133222866 -63972566 + RLTR19-int LTR ERVK 1431 1674 -4463 3 1601 549 30 0 0 chr1 133222866 133222933 -63972499 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1601 867 242 90 10 chr1 133223242 133223442 -63971990 - B3 SINE B2 0 216 1 3 1601 276 218 73 49 chr1 133223498 133223580 -63971852 - MIRc SINE MIR -124 144 61 3 1601 667 189 49 34 chr1 133224021 133224167 -63971265 - B1_Mur1 SINE Alu -2 147 1 3 1601 247 247 25 0 chr1 133225192 133225273 -63970159 - L1MA4A LINE L1 0 6303 6221 3 1601 378 182 45 0 chr1 133225276 133225342 -63970090 + B3A SINE B2 1 69 -129 3 1601 2153 4 0 0 chr1 133225352 133225580 -63969852 - L1Md_T LINE L1 0 6582 6355 3 1601 1934 0 0 0 chr1 133225580 133225791 -63969641 + L1Md_T LINE L1 5747 5957 -625 3 1601 796 231 25 0 chr1 133225791 133225951 -63969481 + B3 SINE B2 53 216 0 3 1601 23 0 0 0 chr1 133225957 133225980 -63969452 + AT_rich Low_complexity Low_complexity 1 23 0 3 1601 1150 136 32 16 chr1 133226298 133226485 -63968947 - B2_Mm2 SINE B2 -3 192 3 3 1601 457 287 0 42 chr1 133227038 133227158 -63968274 + PB1D10 SINE Alu 1 115 -2 3 1601 914 223 13 92 chr1 133227240 133227467 -63967965 + B3 SINE B2 3 211 -5 3 1601 593 260 41 0 chr1 133227483 133227606 -63967826 - B3A SINE B2 -69 129 2 3 1601 22 35 0 0 chr1 133227609 133227638 -63967794 + AT_rich Low_complexity Low_complexity 1 29 0 3 1601 1384 102 0 11 chr1 133227648 133227837 -63967595 - B2_Mm2 SINE B2 -8 187 1 3 1601 189 250 21 0 chr1 133229442 133229490 -63965942 - MIR SINE MIR -77 131 83 3 1601 459 0 0 0 chr1 133230839 133230890 -63964542 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1601 365 167 13 0 chr1 133233205 133233283 -63962149 + CT-rich Low_complexity Low_complexity 2 80 0 3 1601 1850 200 153 14 chr1 133233974 133234457 -63960975 + RMER15 LTR ERVL 26 575 0 3 1601 279 0 0 0 chr1 133236316 133236347 -63959085 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1601 786 232 85 0 chr1 133236515 133236692 -63958740 + B3A SINE B2 1 192 -6 3 1601 362 253 0 25 chr1 133237019 133237100 -63958332 - ID4_ SINE ID -4 79 1 3 1601 188 303 13 38 chr1 133237565 133237644 -63957788 + MIR3 SINE MIR 125 201 -7 3 1601 798 226 20 61 chr1 133238216 133238414 -63957018 - B3A SINE B2 -6 192 3 3 1601 1249 253 46 21 chr1 133238555 133238838 -63956594 - B4A SINE B4 -1 291 2 3 1601 52 50 0 0 chr1 133238875 133238955 -63956477 + AT_rich Low_complexity Low_complexity 1 80 0 3 1601 253 318 0 0 chr1 133239270 133239336 -63956096 + L2b LINE L2 3310 3375 0 3 1601 1266 68 0 0 chr1 133240158 133240304 -63955128 + B1_Mus2 SINE Alu 1 146 -1 3 1601 837 207 45 0 chr1 133241413 133241592 -63953840 - B3 SINE B2 -7 209 23 3 1601 4830 105 57 71 chr1 133245152 133245972 -63949460 + RMER17D2 LTR ERVK 1 809 0 3 1601 827 250 10 26 chr1 133246941 133247026 -63948406 + ID SINE ID 1 82 -142 3 1601 252 280 24 130 chr1 133247026 133247142 -63948290 + PB1D7 SINE Alu 4 107 -13 3 1601 378 0 0 0 chr1 133247142 133247184 -63948248 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1601 233 313 108 7 chr1 133247193 133247333 -63948099 + B4A SINE B4 2 164 -128 3 1601 215 307 77 33 chr1 133247277 133247368 -63948064 + PB1D10 SINE Alu 21 115 -2 3 1601 775 285 16 16 chr1 133247373 133247546 -63947886 + B3A SINE B2 2 175 -23 3 1601 465 34 0 0 chr1 133247546 133247605 -63947827 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1601 775 285 16 16 chr1 133247605 133247620 -63947812 + B3A SINE B2 176 190 -8 3 1601 405 330 76 76 chr1 133247713 133247936 -63947496 + Charlie15a DNA MER1_type 1 223 -1 3 1601 189 304 0 35 chr1 133247936 133247994 -63947438 + MIR3 SINE MIR 150 205 -3 3 1601 225 292 74 74 chr1 133248856 133249004 -63946428 - MIRb SINE MIR -9 259 112 3 1601 321 26 0 0 chr1 133250475 133250513 -63944919 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1601 188 335 173 24 chr1 133251764 133251932 -63943500 + MIRc SINE MIR 23 215 -53 3 1601 26 50 0 0 chr1 133252245 133252285 -63943147 + AT_rich Low_complexity Low_complexity 1 40 0 3 1601 595 255 57 25 chr1 133252305 133252462 -63942970 - RSINE1 SINE B4 0 165 4 3 1601 1025 73 176 13 chr1 133252837 133252990 -63942442 + B2_Mm2 SINE B2 2 179 -16 3 1601 669 58 0 0 chr1 133252993 133253079 -63942353 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 3 1601 322 229 16 114 chr1 133254082 133254205 -63941227 + MT2B2 LTR ERVL 154 264 -320 3 1601 597 207 18 0 chr1 133254098 133254209 -63941223 + B1_Mur3 SINE Alu 6 118 -31 3 1601 215 0 0 62 chr1 133254210 133254242 -63941190 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 3 1601 533 335 111 9 chr1 133254593 133254810 -63940622 - MIRb SINE MIR -10 258 20 3 1601 926 152 22 0 chr1 133255640 133255778 -63939654 + B1_Mur3 SINE Alu 1 141 -8 3 1601 465 19 0 0 chr1 133255782 133255836 -63939596 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1601 812 137 7 0 chr1 133257103 133257242 -63938190 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 4 1601 1132 88 0 0 chr1 133257254 133257391 -63938041 - B1_Mus1 SINE Alu -10 138 2 4 1601 241 239 119 0 chr1 133257596 133257663 -63937769 + MER81 DNA AcHobo 1 75 -39 4 1601 347 151 0 221 chr1 133257665 133257866 -63937566 - B1F1 SINE Alu -9 140 61 4 1601 549 225 90 0 chr1 133257869 133257980 -63937452 - B1_Mur1 SINE Alu -9 140 20 4 1601 390 246 182 0 chr1 133258799 133258909 -63936523 + RSINE1 SINE B4 1 130 -35 4 1601 300 291 34 23 chr1 133259707 133259795 -63935637 + HAL1-3A_ME LINE L1 2284 2372 -486 4 1601 1031 117 0 0 chr1 133261436 133261581 -63933851 + B2_Mm2 SINE B2 2 146 -49 4 1601 324 48 73 88 chr1 133261614 133261682 -63933750 + B2_Mm1a SINE B2 127 193 0 4 1601 415 266 0 0 chr1 133261834 133261913 -63933519 - ID4_ SINE ID -4 79 1 4 1601 297 0 0 0 chr1 133261970 133262003 -63933429 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1601 623 128 9 0 chr1 133262017 133262126 -63933306 + (GA)n Simple_repeat Simple_repeat 1 110 0 4 1601 264 292 110 42 chr1 133262139 133262257 -63933175 - RSINE1 SINE B4 -24 141 16 4 1601 854 259 45 15 chr1 133262520 133262824 -63932608 - ORR1E LTR MaLR 0 379 4 4 1601 982 276 69 74 chr1 133262906 133263266 -63932166 + L1MA6 LINE L1 5010 5369 -774 4 1601 1801 174 61 56 chr1 133263266 133263674 -63931758 + RMER17C LTR ERVK 1 410 0 4 1601 982 279 146 38 chr1 133263674 133264155 -63931277 + L1MA6 LINE L1 5341 5945 -355 4 1601 806 68 256 0 chr1 133264182 133264299 -63931133 + B1_Mus1 SINE Alu 1 147 -1 4 1601 846 91 0 0 chr1 133264326 133264447 -63930985 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 4 1601 1037 266 100 16 chr1 133264703 133265074 -63930358 - MTD LTR MaLR 0 419 18 4 1601 2925 21 39 12 chr1 133265683 133266021 -63929411 - L1Md_F2 LINE L1 -2 6580 6234 4 1601 18036 55 9 1 chr1 133266224 133268492 -63926940 - L1_Mm LINE L1 -728 5155 2869 4 1601 39302 51 2 5 chr1 133268481 133274658 -63920774 - L1Md_T LINE L1 0 6582 422 4 1601 279 133 0 0 chr1 133275746 133275791 -63919641 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1601 539 251 94 21 chr1 133276159 133276350 -63919082 - B3 SINE B2 -1 215 11 4 1601 253 340 113 0 chr1 133277872 133277978 -63917454 - L2c LINE L2 -4 3383 3266 4 1601 4202 166 57 120 chr1 133278478 133279577 -63915855 + RMER1A Other Other 1 1030 0 4 1601 472 254 229 11 chr1 133279683 133279866 -63915566 + RCHARR1 DNA MER1_type 278 500 -474 4 1601 825 300 99 32 chr1 133279907 133280813 -63914619 + L1M2 LINE L1 2170 3136 -3007 4 1601 328 286 85 58 chr1 133281679 133281868 -63913564 + L1MEg LINE L1 1585 1778 -4306 4 1601 610 301 7 0 chr1 133281876 133282022 -63913410 + RSINE1 SINE B4 4 150 -15 4 1601 342 0 0 0 chr1 133282026 133282064 -63913368 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1601 1250 271 96 10 chr1 133282123 133282507 -63912925 + Lx5 LINE L1 6634 7050 0 4 1601 380 240 47 19 chr1 133282525 133282631 -63912801 + PB1D10 SINE Alu 2 110 -7 4 1601 412 220 53 32 chr1 133282985 133283079 -63912353 + PB1D10 SINE Alu 1 96 -21 4 1601 232 237 38 50 chr1 133283008 133283088 -63912344 - YREP_Mm Unknown Unknown -1519 293 215 4 1601 465 286 244 4 chr1 133283088 133283538 -63911894 - L1MEg LINE L1 -4602 1482 925 4 1601 1149 239 46 17 chr1 133283627 133283972 -63911460 - L1MB7 LINE L1 -17 6167 5813 4 1601 221 324 13 39 chr1 133283979 133284056 -63911376 - ID4 SINE ID -8 75 1 4 1601 447 256 121 30 chr1 133284066 133284299 -63911133 - L1MB7 LINE L1 -342 5822 5572 4 1601 281 321 0 0 chr1 133284322 133284378 -63911054 - B1F2 SINE Alu -93 56 1 4 1601 599 266 83 7 chr1 133284378 133284691 -63910741 - L1MB7 LINE L1 -667 5507 5159 4 1601 249 315 118 18 chr1 133284915 133285025 -63910407 - L1MEg LINE L1 -5558 526 406 4 1601 378 211 14 0 chr1 133285130 133285201 -63910231 - ID4_ SINE ID -10 73 2 4 1601 309 225 53 97 chr1 133285218 133285331 -63910101 - ID_B1 SINE B4 0 224 117 4 1601 385 164 0 15 chr1 133285958 133286026 -63909406 + RSINE1 SINE B4 2 68 -97 4 1601 347 315 237 5 chr1 133286240 133286438 -63908994 - MIRb SINE MIR 0 268 25 4 1601 12333 105 10 6 chr1 133286986 133289785 -63905647 + L1_Mus4 LINE L1 3827 6636 0 4 1601 773 71 32 0 chr1 133290980 133291106 -63904326 + (TC)n Simple_repeat Simple_repeat 1 130 0 4 1601 239 54 0 26 chr1 133291752 133291790 -63903642 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 1601 1079 221 10 5 chr1 133291877 133292086 -63903346 - B3 SINE B2 -6 210 1 4 1601 27 0 0 0 chr1 133293051 133293078 -63902354 + AT_rich Low_complexity Low_complexity 1 27 0 4 1601 260 273 146 20 chr1 133293638 133293765 -63901667 + MIR3 SINE MIR 19 159 -49 4 1601 451 286 95 91 chr1 133293790 133294018 -63901414 + L2a LINE L2 2492 2732 -687 4 1601 680 123 197 0 chr1 133294018 133294140 -63901292 - B1_Mus1 SINE Alu -1 147 2 4 1601 451 286 95 91 chr1 133294140 133294196 -63901236 + L2a LINE L2 2733 2777 -642 4 1601 984 103 0 0 chr1 133294338 133294503 -63900929 + (TC)n Simple_repeat Simple_repeat 1 165 0 4 1601 198 0 0 0 chr1 133294503 133294524 -63900908 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1601 321 298 90 8 chr1 133294547 133294669 -63900763 + L2a LINE L2 3295 3426 0 4 1601 297 0 0 0 chr1 133295451 133295484 -63899948 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1601 23 33 0 0 chr1 133295485 133295515 -63899917 + AT_rich Low_complexity Low_complexity 1 30 0 4 1601 518 244 53 8 chr1 133296585 133296717 -63898715 - B1F SINE Alu -2 147 10 4 1601 355 287 66 52 chr1 133296596 133296732 -63898700 - ID_B1 SINE B4 -17 207 70 4 1601 360 294 70 42 chr1 133297048 133297064 -63898368 + ID_B1 SINE B4 77 155 -69 4 1601 408 272 78 9 chr1 133297064 133297179 -63898253 + B1F2 SINE Alu 14 136 -13 4 1601 360 294 70 42 chr1 133297179 133297190 -63898242 + ID_B1 SINE B4 156 222 -2 4 1601 548 317 47 35 chr1 133297603 133297861 -63897571 + MIR SINE MIR 2 262 0 4 1601 291 157 0 0 chr1 133298103 133298154 -63897278 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 4 1601 392 267 12 0 chr1 133298342 133298428 -63897004 + PB1D10 SINE Alu 2 88 -29 4 1601 491 16 32 0 chr1 133298431 133298494 -63896938 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 4 1601 307 259 46 23 chr1 133298799 133298886 -63896546 + HAL1-3A_ME LINE L1 2281 2369 -489 4 1601 213 39 0 0 chr1 133299541 133299567 -63895865 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1602 864 285 80 19 chr1 133300823 133301134 -63894298 - MER2 DNA MER2_type -1 344 15 4 1602 1819 212 46 39 chr1 133301365 133301781 -63893651 + MTD LTR MaLR 1 419 0 4 1602 416 305 47 26 chr1 133301888 133302080 -63893352 - MLT1D LTR MaLR -214 291 96 4 1602 2315 143 71 38 chr1 133302125 133302632 -63892800 - RLTR28 LTR ERVL 0 524 1 4 1602 744 256 70 38 chr1 133302632 133303051 -63892381 - L1M4 LINE L1 -493 5671 5236 4 1602 443 264 279 25 chr1 133303052 133303367 -63892065 + MLT1A1 LTR MaLR 1 395 -13 4 1602 357 259 140 7 chr1 133303368 133303504 -63891928 - L1M4 LINE L1 -921 5225 5072 4 1602 250 297 0 30 chr1 133303504 133303570 -63891862 - MER5B DNA MER1_type -113 65 2 4 1602 363 282 179 28 chr1 133304704 133304883 -63890549 + MIRb SINE MIR 27 236 -32 4 1602 583 311 28 8 chr1 133305569 133305819 -63889613 + L1ME3A LINE L1 5881 6135 -38 4 1602 1487 230 39 3 chr1 133306083 133306440 -63888992 + ORR1D2 LTR MaLR 1 370 0 4 1602 202 239 0 0 chr1 133307141 133307187 -63888245 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1602 2085 157 36 59 chr1 133307269 133307656 -63887776 + ORR1C1 LTR MaLR 1 378 0 4 1602 445 274 169 56 chr1 133308671 133308999 -63886433 + ORR1E LTR MaLR 1 370 0 4 1602 878 90 104 8 chr1 133309122 133309256 -63886176 - B1_Mus1 SINE Alu 0 148 2 4 1602 1395 54 21 21 chr1 133309275 133309464 -63885968 - B2_Mm2 SINE B2 -5 190 2 4 1602 899 207 25 40 chr1 133309659 133309860 -63885572 + B3A SINE B2 1 198 0 4 1602 869 153 271 0 chr1 133311147 133311317 -63884115 - B3 SINE B2 0 216 1 4 1602 631 219 101 7 chr1 133311334 133311472 -63883960 + RSINE1 SINE B4 3 153 -12 4 1602 189 154 0 0 chr1 133312194 133312233 -63883199 + CT-rich Low_complexity Low_complexity 1 39 0 4 1602 298 255 83 157 chr1 133312292 133312413 -63883019 + PB1D10 SINE Alu 3 114 -6 4 1602 256 327 74 9 chr1 133313631 133313739 -63881693 + MIRc SINE MIR 154 268 0 4 1602 22 0 0 0 chr1 133314344 133314366 -63881066 + AT_rich Low_complexity Low_complexity 1 22 0 4 1602 860 117 18 12 chr1 133315144 133315308 -63880124 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 4 1602 494 272 0 0 chr1 133315432 133315535 -63879897 + PB1D7 SINE Alu 13 115 -5 4 1602 22 0 0 0 chr1 133315838 133315860 -63879572 + AT_rich Low_complexity Low_complexity 1 22 0 4 1602 212 331 49 77 chr1 133316511 133316694 -63878738 + MIRc SINE MIR 47 224 -44 4 1602 443 261 119 42 chr1 133317064 133317232 -63878200 - MIR3 SINE MIR -5 203 23 4 1602 188 107 0 0 chr1 133317838 133317866 -63877566 - MER5A DNA MER1_type -22 167 140 4 1602 241 219 43 86 chr1 133317867 133317937 -63877495 + MER5A DNA MER1_type 105 171 -18 4 1602 765 260 20 40 chr1 133318108 133318308 -63877124 + B3A SINE B2 1 196 -2 4 1602 214 394 94 8 chr1 133318427 133318446 -63876986 - B4 SINE B4 -62 230 92 4 1602 484 250 9 9 chr1 133318446 133318555 -63876877 - PB1D10 SINE Alu -2 115 7 4 1602 204 156 0 22 chr1 133319119 133319165 -63876267 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 1602 215 212 17 17 chr1 133320140 133320208 -63875224 + T-rich Low_complexity Low_complexity 1 68 0 4 1602 883 156 7 28 chr1 133320209 133320354 -63875078 - B1_Mus2 SINE Alu 0 147 6 4 1602 399 255 0 105 chr1 133320259 133320373 -63875059 - MT2B LTR ERVL -345 256 155 5 1602 316 302 103 32 chr1 133320444 133320801 -63874631 + L1MC4 LINE L1 6228 6618 -1424 5 1602 643 268 136 5 chr1 133320812 133321011 -63874421 + Tigger5 DNA MER2_type 18 242 -2164 5 1602 412 290 75 0 chr1 133321007 133321114 -63874318 + Tigger5 DNA MER2_type 2291 2405 -1 5 1602 1058 281 136 65 chr1 133321204 133321920 -63873512 + L1MC4 LINE L1 6744 7528 -514 5 1602 487 195 110 117 chr1 133321920 133322054 -63873378 + B1_Mur4 SINE Alu 5 140 -10 5 1602 180 77 0 0 chr1 133322054 133322080 -63873352 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1602 1058 281 136 65 chr1 133322090 133322586 -63872846 + L1MC4 LINE L1 7529 8042 0 5 1602 200 333 96 11 chr1 133322672 133322766 -63872666 + L2b LINE L2 3234 3335 -40 5 1602 279 253 76 0 chr1 133323647 133323726 -63871706 + B4A SINE B4 68 152 -140 5 1602 339 184 56 0 chr1 133323671 133323748 -63871684 + PB1D10 SINE Alu 9 91 -36 5 1602 270 0 0 0 chr1 133323749 133323779 -63871653 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1602 23 0 0 0 chr1 133324930 133324953 -63870479 + AT_rich Low_complexity Low_complexity 1 23 0 5 1602 582 314 71 18 chr1 133325617 133325841 -63869591 - MIRb SINE MIR -8 260 25 5 1602 1133 314 36 2 chr1 133326147 133326540 -63868892 - Lx8 LINE L1 -163 7310 6905 5 1602 907 215 59 0 chr1 133327166 133327352 -63868080 - B3 SINE B2 0 216 20 5 1602 28 0 0 0 chr1 133327480 133327508 -63867924 + AT_rich Low_complexity Low_complexity 1 28 0 5 1602 227 243 108 0 chr1 133328502 133328576 -63866856 + LTR16D LTR ERVL 163 244 -407 5 1602 862 181 138 5 chr1 133328967 133329156 -63866276 - B3 SINE B2 0 216 3 5 1602 393 334 150 64 chr1 133329646 133329972 -63865460 + MLT1J LTR MaLR 20 373 -139 5 1602 364 261 162 7 chr1 133330559 133330583 -63864849 - B2_Mm2 SINE B2 -8 187 161 5 1602 441 0 0 0 chr1 133330583 133330632 -63864800 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1602 513 221 225 0 chr1 133330632 133330761 -63864671 - B3A SINE B2 -35 160 10 5 1602 421 342 74 68 chr1 133331341 133331680 -63863752 + ORR1E LTR MaLR 19 359 0 5 1602 792 164 0 0 chr1 133331813 133331990 -63863442 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1602 427 196 13 0 chr1 133332001 133332159 -63863273 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1602 429 54 0 0 chr1 133332954 133333010 -63862422 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1602 583 40 470 0 chr1 133333857 133333957 -63861475 - B1_Mus2 SINE Alu 0 147 1 5 1602 1180 51 0 0 chr1 133334257 133334395 -63861037 + B1_Mm SINE Alu 1 138 -9 5 1602 206 32 0 31 chr1 133334395 133334427 -63861005 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1602 219 88 0 0 chr1 133334483 133334517 -63860915 + (ATG)n Simple_repeat Simple_repeat 2 35 0 5 1602 1624 32 5 0 chr1 133336070 133336260 -63859172 - B2_Mm1t SINE B2 -1 192 2 5 1602 614 269 166 21 chr1 133336480 133336762 -63858670 + MTE2b LTR MaLR 57 379 0 5 1602 738 60 265 0 chr1 133337821 133337938 -63857494 - B1_Mus1 SINE Alu 0 148 1 5 1602 180 0 0 0 chr1 133338257 133338277 -63857155 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1602 180 0 0 0 chr1 133338277 133338296 -63857136 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1602 379 140 30 0 chr1 133338415 133338515 -63856917 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 5 1602 204 40 0 0 chr1 133338515 133338540 -63856892 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1602 214 398 37 0 chr1 133339804 133339912 -63855520 - MIR3 SINE MIR -87 121 10 5 1602 31 26 0 0 chr1 133339920 133339958 -63855474 + AT_rich Low_complexity Low_complexity 1 38 0 5 1602 425 299 158 43 chr1 133340338 133340761 -63854671 + L2a LINE L2 2320 2791 -628 5 1602 331 356 55 70 chr1 133340865 133341203 -63854229 + L2a LINE L2 2977 3307 -68 5 1602 540 262 122 50 chr1 133341418 133341599 -63853833 + B3A SINE B2 2 195 -3 5 1602 297 286 119 37 chr1 133342226 133342553 -63852879 + Charlie21a DNA MER1_type 858 1211 -2 5 1602 312 208 12 59 chr1 133344470 133344597 -63850835 - B3 SINE B2 0 216 1 5 1602 191 95 48 0 chr1 133344631 133344673 -63850759 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 5 1602 853 221 60 141 chr1 133345219 133345488 -63849944 - MTEa LTR MaLR -130 249 3 5 1602 905 252 111 77 chr1 133345590 133345952 -63849480 + MTEa LTR MaLR 1 368 -2 5 1602 1421 69 5 16 chr1 133346322 133346514 -63848918 - B2_Mm1a SINE B2 -2 191 2 5 1602 635 250 0 0 chr1 133346578 133346702 -63848730 + B1F1 SINE Alu 13 136 -13 5 1602 378 0 0 0 chr1 133346702 133346744 -63848688 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 5 1602 1146 44 0 0 chr1 133346774 133346910 -63848522 + B1_Mus2 SINE Alu 2 137 -10 5 1602 212 0 36 0 chr1 133346910 133346938 -63848494 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1602 189 0 0 0 chr1 133346972 133346993 -63848439 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1602 396 338 67 32 chr1 133347777 133347980 -63847452 + L2a LINE L2 2942 3161 -226 5 1602 801 290 102 50 chr1 133348550 133348953 -63846479 - Lx8 LINE L1 -28 7445 7022 5 1602 606 281 90 5 chr1 133348999 133349210 -63846222 - Lx8 LINE L1 -814 6659 6431 5 1602 201 39 0 0 chr1 133350398 133350424 -63845008 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1602 995 209 103 37 chr1 133351027 133351375 -63844057 + Lx8 LINE L1 7075 7445 -28 5 1602 454 259 162 8 chr1 133351435 133351552 -63843880 + RSINE1 SINE B4 3 137 -28 5 1602 225 0 0 0 chr1 133351688 133351713 -63843719 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1602 266 368 71 16 chr1 133352645 133352772 -63842660 + MER20B DNA MER1_type 29 162 -621 5 1602 503 328 8 16 chr1 133352822 133352949 -63842483 + B1F SINE Alu 17 142 -7 5 1602 360 0 0 0 chr1 133353207 133353247 -63842185 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1602 5854 131 19 18 chr1 133353564 133354552 -63840880 + Lx LINE L1 5665 6653 -1 5 1602 201 326 12 100 chr1 133356168 133356227 -63839205 + L2a LINE L2 3221 3274 -152 5 1602 798 153 66 0 chr1 133356227 133356364 -63839068 - B1_Mur3 SINE Alu -3 146 1 5 1602 201 326 12 100 chr1 133356364 133356464 -63838968 + L2a LINE L2 3275 3365 -61 5 1602 1209 206 124 87 chr1 133356469 133356873 -63838559 + MTD LTR MaLR 1 419 0 5 1602 382 261 165 16 chr1 133356923 133357044 -63838388 - MLT1I LTR MaLR -28 383 245 5 1602 270 0 0 0 chr1 133357580 133357610 -63837822 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1602 396 0 0 0 chr1 133357610 133357653 -63837779 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1602 21 0 0 0 chr1 133358108 133358129 -63837303 + AT_rich Low_complexity Low_complexity 1 21 0 5 1602 1251 41 0 0 chr1 133358180 133358327 -63837105 - B1_Mus2 SINE Alu 0 147 1 5 1602 244 284 137 37 chr1 133359813 133359974 -63835458 + L1MC LINE L1 5693 5869 -2013 5 1602 234 310 17 0 chr1 133360475 133360533 -63834899 + tRNA-Gly-GGY tRNA tRNA 1 59 -15 5 1602 249 263 44 0 chr1 133360482 133360547 -63834885 + ID4_ SINE ID 14 82 -1 5 1602 213 312 78 0 chr1 133360547 133360559 -63834873 + ID_B1 SINE B4 14 96 -128 5 1602 496 249 91 25 chr1 133361032 133361189 -63834243 + B3 SINE B2 3 169 -47 5 1602 441 0 0 0 chr1 133361189 133361238 -63834194 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1602 496 249 91 25 chr1 133361238 133361278 -63834154 + B3 SINE B2 170 213 -3 5 1602 228 235 0 0 chr1 133361289 133361340 -63834092 + GA-rich Low_complexity Low_complexity 1 51 0 5 1602 466 269 0 9 chr1 133362074 133362183 -63833249 - PB1D10 SINE Alu -9 108 1 5 1602 408 349 28 9 chr1 133362352 133362569 -63832863 - MER58A DNA MER1_type -1 223 3 5 1602 187 372 95 14 chr1 133362785 133362932 -63832500 + L2b LINE L2 3120 3278 -109 5 1602 245 95 95 0 chr1 133362943 133362985 -63832447 + ORR1A4 LTR MaLR 1 46 -283 5 1602 197 295 66 0 chr1 133363229 133363290 -63832142 + L2b LINE L2 3306 3370 -5 5 1602 207 69 0 0 chr1 133363526 133363555 -63831877 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1602 506 310 0 53 chr1 133365019 133365169 -63830263 + ID_B1 SINE B4 80 221 -3 5 1602 391 247 13 0 chr1 133365308 133365385 -63830047 + PB1D10 SINE Alu 32 109 -8 5 1602 397 270 22 0 chr1 133365423 133365512 -63829920 + B3 SINE B2 126 216 0 5 1602 180 0 0 0 chr1 133366205 133366225 -63829207 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5 1602 918 228 129 67 chr1 133366656 133367013 -63828419 - MTE2a LTR MaLR 0 379 1 5 1602 893 168 94 6 chr1 133367361 133367541 -63827891 + B3 SINE B2 2 197 -19 5 1602 351 0 0 0 chr1 133367542 133367581 -63827851 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1602 258 183 0 32 chr1 133367606 133367668 -63827764 + A-rich Low_complexity Low_complexity 1 60 0 5 1602 2265 188 12 5 chr1 133367694 133368110 -63827322 + MTD LTR MaLR 1 419 0 5 1602 525 224 0 0 chr1 133368843 133368968 -63826464 + GA-rich Low_complexity Low_complexity 2 126 0 5 1602 932 78 54 0 chr1 133369580 133369709 -63825723 - B2_Mm2 SINE B2 -58 137 2 5 1602 1270 47 121 6 chr1 133371208 133371381 -63824051 + B2_Mm2 SINE B2 2 194 -1 5 1602 210 333 140 49 chr1 133371456 133371748 -63823684 - L2a LINE L2 -272 3154 2822 5 1602 862 198 123 15 chr1 133371748 133371943 -63823489 - B3 SINE B2 0 216 1 5 1602 197 317 155 51 chr1 133371943 133372095 -63823337 - L2a LINE L2 -598 2821 2662 5 1602 224 261 53 80 chr1 133372225 133372300 -63823132 + L2b LINE L2 3302 3374 -1 5 1602 6602 111 24 13 chr1 133372983 133374240 -63821192 + Lx LINE L1 5383 6653 -1 5 1602 231 272 40 80 chr1 133374550 133374650 -63820782 + MIR SINE MIR 42 137 -71 5 1602 192 40 0 0 chr1 133376135 133376160 -63819272 + (CAA)n Simple_repeat Simple_repeat 3 27 0 5 1602 405 323 62 0 chr1 133376411 133376541 -63818891 - MER2 DNA MER2_type 0 345 208 5 1602 548 246 42 28 chr1 133376643 133376785 -63818647 - RSINE1 SINE B4 -15 150 7 5 1602 680 200 43 0 chr1 133376786 133376926 -63818506 - MER2 DNA MER2_type -119 226 81 5 1602 218 259 47 58 chr1 133377090 133377176 -63818256 - PB1D10 SINE Alu 0 117 33 5 1602 221 339 18 0 chr1 133377773 133377829 -63817603 - ID4 SINE ID -4 79 23 5 1602 205 270 0 26 chr1 133379615 133379691 -63815741 + (TTG)n Simple_repeat Simple_repeat 2 75 0 6 1602 481 135 29 68 chr1 133379694 133379797 -63815635 - B1_Mur1 SINE Alu 0 149 51 6 1602 570 286 54 26 chr1 133380087 133380304 -63815128 - B3A SINE B2 -2 214 1 6 1602 1267 110 15 25 chr1 133380999 133381195 -63814237 - B2_Mm2 SINE B2 -1 194 1 6 1602 506 332 91 25 chr1 133381257 133381455 -63813977 + ID_B1 SINE B4 2 212 -12 6 1602 24 32 0 0 chr1 133381607 133381638 -63813794 + AT_rich Low_complexity Low_complexity 1 31 0 6 1602 336 316 0 40 chr1 133381682 133381781 -63813651 - RSINE1 SINE B4 -43 122 28 6 1602 279 304 12 37 chr1 133381993 133382075 -63813357 + B4A SINE B4 201 280 -12 6 1602 631 300 18 115 chr1 133382529 133382871 -63812561 - B4 SINE B4 -11 281 7 6 1602 558 299 86 31 chr1 133383013 133383175 -63812257 + ID_B1 SINE B4 2 172 -52 6 1602 364 307 30 0 chr1 133383089 133383190 -63812242 + PB1D10 SINE Alu 6 109 -8 6 1602 264 180 20 0 chr1 133383311 133383361 -63812071 + Lx8 LINE L1 6103 6153 -1320 6 1602 263 274 130 34 chr1 133384016 133384146 -63811286 + MIRb SINE MIR 37 184 -84 6 1602 1394 84 21 0 chr1 133385300 133385490 -63809942 + B2_Mm2 SINE B2 2 195 0 6 1602 1171 62 7 0 chr1 133385586 133385732 -63809700 + B1_Mus1 SINE Alu 1 147 -1 6 1602 268 340 53 33 chr1 133386479 133386631 -63808801 + MIR SINE MIR 108 262 0 6 1602 263 244 24 12 chr1 133386877 133387020 -63808412 + (CATATA)n Simple_repeat Simple_repeat 1 144 0 6 1602 275 277 115 68 chr1 133387128 133387201 -63808231 + Tigger13a DNA MER2_type 237 306 -465 6 1602 1036 202 20 0 chr1 133387201 133387399 -63808033 + B3 SINE B2 1 202 -14 6 1602 275 277 115 68 chr1 133387399 133387577 -63807855 + Tigger13a DNA MER2_type 307 500 -271 6 1602 379 253 24 0 chr1 133387577 133387660 -63807772 + PB1D10 SINE Alu 33 117 0 6 1602 543 16 0 0 chr1 133388092 133388156 -63807276 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1602 320 354 49 0 chr1 133388896 133389060 -63806372 + L3b LINE CR1 216 387 -95 6 1602 513 0 0 0 chr1 133389830 133389887 -63805545 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1602 261 0 0 0 chr1 133389887 133389915 -63805517 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1602 426 20 0 0 chr1 133391571 133391622 -63803810 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 6 1602 532 240 0 0 chr1 133391624 133391728 -63803704 - PB1D10 SINE Alu -12 105 2 6 1602 213 248 99 54 chr1 133391745 133391856 -63803576 + MIRc SINE MIR 47 162 -106 6 1602 610 253 93 49 chr1 133391932 133392115 -63803317 - B4 SINE B4 0 292 102 6 1602 749 162 262 44 chr1 133392128 133392254 -63803178 - Lx9 LINE L1 -6 7638 7517 6 1602 216 0 0 0 chr1 133392254 133392278 -63803154 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1602 324 127 0 0 chr1 133392280 133392335 -63803097 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1602 749 162 262 44 chr1 133392335 133392457 -63802975 - Lx9 LINE L1 -128 7516 7332 6 1602 390 161 34 80 chr1 133392469 133392557 -63802875 - B4 SINE B4 -203 89 6 6 1602 259 250 55 77 chr1 133393006 133393097 -63802335 - B4A SINE B4 -12 280 192 6 1602 500 251 136 38 chr1 133393091 133393368 -63802064 + MTD LTR MaLR 56 386 -33 6 1602 330 26 0 0 chr1 133393369 133393408 -63802024 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 6 1602 545 210 149 16 chr1 133393408 133393529 -63801903 - B1_Mur1 SINE Alu -12 137 1 6 1602 464 306 138 26 chr1 133393904 133394373 -63801059 + L2b LINE L2 2684 3200 -175 6 1602 4963 198 111 32 chr1 133394415 133394644 -63800788 - MMAR1 DNA Mariner 0 1286 1053 6 1602 521 239 0 93 chr1 133394644 133394773 -63800659 + PB1D9 SINE Alu 3 119 -1 6 1602 4963 198 111 32 chr1 133394773 133394861 -63800571 - MMAR1 DNA Mariner -234 1052 966 6 1602 669 171 0 57 chr1 133394861 133394985 -63800447 - PB1D9 SINE Alu -3 117 1 6 1602 4963 198 111 32 chr1 133394985 133395858 -63799574 - MMAR1 DNA Mariner -321 965 1 6 1602 336 48 0 0 chr1 133396015 133396057 -63799375 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 6 1602 812 147 155 0 chr1 133396075 133396204 -63799228 - B1_Mur4 SINE Alu 0 150 2 6 1602 24 0 0 0 chr1 133396663 133396687 -63798745 + AT_rich Low_complexity Low_complexity 1 24 0 6 1602 694 169 52 44 chr1 133396701 133396837 -63798595 + B1_Mur1 SINE Alu 13 149 0 6 1602 265 294 91 98 chr1 133396931 133396952 -63798480 + B4 SINE B4 72 213 -79 6 1602 615 134 107 25 chr1 133396952 133397074 -63798358 + B1_Mur4 SINE Alu 6 137 -13 6 1602 270 186 67 17 chr1 133397771 133397831 -63797601 + ID4_ SINE ID 12 74 -9 6 1602 308 288 51 59 chr1 133398598 133398716 -63796716 + ID_B1 SINE B4 100 216 -8 6 1602 774 203 25 111 chr1 133399770 133399969 -63795463 - B3A SINE B2 -16 182 1 6 1602 610 355 18 5 chr1 133400306 133400527 -63794905 + B4 SINE B4 1 224 -68 6 1602 432 327 19 12 chr1 133400829 133400990 -63794442 - L2c LINE L2 0 3387 3226 6 1602 243 333 22 40 chr1 133403116 133403229 -63792203 - L2a LINE L2 -4 3422 3259 6 1602 385 280 65 48 chr1 133403900 133404024 -63791408 + B1F SINE Alu 24 149 0 6 1602 423 260 211 0 chr1 133404036 133404140 -63791292 + ID_B1 SINE B4 85 210 -14 6 1602 868 261 107 55 chr1 133404165 133404437 -63790995 + B4 SINE B4 7 292 0 6 1602 610 316 105 75 chr1 133404563 133404830 -63790602 + B4A SINE B4 18 292 0 6 1602 270 265 14 14 chr1 133404891 133404960 -63790472 + B1F SINE Alu 80 148 -1 6 1602 646 243 249 0 chr1 133404963 133405132 -63790300 + B3 SINE B2 2 212 -4 6 1602 323 261 37 48 chr1 133405404 133405559 -63789873 + L1M4 LINE L1 4930 5085 -1061 6 1602 554 335 26 0 chr1 133405797 133405952 -63789480 + RSINE1 SINE B4 3 161 -4 6 1602 207 0 0 0 chr1 133405961 133405984 -63789448 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1602 323 45 0 22 chr1 133405988 133406034 -63789398 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 6 1602 677 243 26 7 chr1 133406287 133406440 -63788992 + L1MD1 LINE L1 5673 5828 -531 6 1602 462 306 60 0 chr1 133406477 133406611 -63788821 - RSINE1 SINE B4 -21 144 3 6 1602 389 333 7 34 chr1 133406719 133406868 -63788564 - RSINE1 SINE B4 -17 148 4 6 1602 22 0 0 0 chr1 133406906 133406928 -63788504 + AT_rich Low_complexity Low_complexity 1 22 0 6 1602 437 34 17 0 chr1 133406933 133406992 -63788440 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1602 682 189 41 0 chr1 133407005 133407127 -63788305 - RSINE1 SINE B4 -22 143 17 6 1602 811 263 50 64 chr1 133407131 133407489 -63787943 + L1MD1 LINE L1 5880 6232 -10 6 1602 24 0 0 0 chr1 133407527 133407551 -63787881 + AT_rich Low_complexity Low_complexity 1 24 0 6 1602 195 356 91 25 chr1 133407686 133407807 -63787625 + L2c LINE L2 3254 3382 -5 6 1602 598 231 5 5 chr1 133407992 133408212 -63787220 + CT-rich Low_complexity Low_complexity 1 220 0 6 1602 493 126 25 6 chr1 133408908 133408993 -63786439 + B1_Mus2 SINE Alu 20 141 -6 6 1602 660 26 0 0 chr1 133408995 133409073 -63786359 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 6 1602 240 130 0 0 chr1 133409083 133409129 -63786303 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1602 189 373 45 0 chr1 133409591 133409658 -63785774 - MIR SINE MIR -58 150 81 6 1602 22 0 0 0 chr1 133410045 133410067 -63785365 + AT_rich Low_complexity Low_complexity 1 22 0 6 1602 224 250 19 0 chr1 133410081 133410133 -63785299 - MIR3 SINE MIR -38 170 118 6 1602 702 200 23 8 chr1 133410295 133410426 -63785006 - ID_B1 SINE B4 -8 216 84 6 1602 513 300 84 15 chr1 133410473 133410676 -63784756 + MIR SINE MIR 46 262 0 6 1602 651 13 0 0 chr1 133410812 133410888 -63784544 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1602 654 49 0 0 chr1 133411247 133411329 -63784103 + (GAGAA)n Simple_repeat Simple_repeat 4 85 0 6 1602 702 207 0 29 chr1 133411755 133411894 -63783538 + B1F SINE Alu 12 146 -3 6 1602 281 222 149 53 chr1 133412406 133412520 -63782912 - L2c LINE L2 -223 3164 3040 6 1602 260 296 122 22 chr1 133413076 133413166 -63782266 + PB1D10 SINE Alu 11 109 -8 6 1602 349 327 103 37 chr1 133413174 133413447 -63781985 + B4A SINE B4 2 292 0 6 1602 250 313 132 26 chr1 133413795 133413946 -63781486 + MIRb SINE MIR 94 260 -8 6 1602 328 288 14 14 chr1 133414665 133414739 -63780693 - ID SINE ID -149 75 2 6 1602 309 200 16 141 chr1 133414789 133414917 -63780515 + MT2B LTR ERVL 153 264 -337 6 1602 675 245 0 7 chr1 133414813 133414953 -63780479 + B1F2 SINE Alu 11 149 0 6 1602 36 53 0 0 chr1 133414979 133415036 -63780396 + AT_rich Low_complexity Low_complexity 1 57 0 6 1602 1157 39 0 0 chr1 133415177 133415306 -63780126 + B1_Mus1 SINE Alu 1 129 -19 6 1602 483 63 0 0 chr1 133415314 133415377 -63780055 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1602 1184 158 86 5 chr1 133415383 133415580 -63779852 + B3 SINE B2 1 213 -3 6 1602 1448 226 137 22 chr1 133415607 133416051 -63779381 + L1MB3 LINE L1 5689 6183 0 6 1602 413 295 28 28 chr1 133417114 133417222 -63778210 + B1F1 SINE Alu 10 117 -32 6 1602 470 128 128 0 chr1 133417212 133417298 -63778134 + B1_Mur2 SINE Alu 53 149 0 6 1602 184 30 29 29 chr1 133417302 133417336 -63778096 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1602 532 254 26 0 chr1 133418120 133418234 -63777198 - PB1D7 SINE Alu -2 118 2 6 1602 304 329 155 28 chr1 133418381 133418594 -63776838 - MIRb SINE MIR -3 265 26 6 1602 620 278 7 0 chr1 133418719 133418863 -63776569 + B1F SINE Alu 5 149 0 6 1602 269 202 189 11 chr1 133418994 133419084 -63776348 + L2a LINE L2 3303 3408 -18 6 1602 216 274 32 0 chr1 133419103 133419165 -63776267 + MIRc SINE MIR 72 135 -133 7 1602 311 226 72 5 chr1 133419386 133419483 -63775949 + MIR SINE MIR 70 175 -101 7 1602 309 26 0 0 chr1 133419568 133419606 -63775826 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1602 277 325 97 51 chr1 133419893 133420068 -63775364 - AmnSINE1 SINE SINE -159 416 234 7 1602 351 0 0 0 chr1 133422042 133422081 -63773351 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1602 308 301 59 82 chr1 133426210 133426380 -63769052 - B3A SINE B2 0 198 33 7 1602 1436 247 174 19 chr1 133426485 133427041 -63768391 + L1MB2 LINE L1 5480 6118 -53 7 1602 329 277 0 0 chr1 133427054 133427119 -63768313 + ID4_ SINE ID 5 69 -14 7 1602 463 241 44 53 chr1 133427502 133427616 -63767816 - RSINE1 SINE B4 -50 115 3 7 1602 514 301 125 31 chr1 133427780 133427972 -63767460 + B4A SINE B4 2 211 -81 7 1602 829 138 100 0 chr1 133428167 133428297 -63767135 - B1_Mus2 SINE Alu 0 147 5 7 1602 447 322 0 0 chr1 133428303 133428418 -63767014 - B1F SINE Alu -1 148 34 7 1602 211 164 0 32 chr1 133428470 133428533 -63766899 + CT-rich Low_complexity Low_complexity 1 61 0 7 1602 227 305 91 8 chr1 133428533 133428665 -63766767 - B1F2 SINE Alu -6 143 1 7 1602 207 348 55 55 chr1 133428917 133429183 -63766249 - L2a LINE L2 -22 3404 3152 7 1602 207 354 15 15 chr1 133429204 133429270 -63766162 - L2a LINE L2 -300 3075 3010 7 1602 441 293 39 31 chr1 133429350 133429477 -63765955 + L2a LINE L2 3299 3426 0 7 1602 376 242 66 0 chr1 133430774 133430865 -63764567 - PB1D10 SINE Alu -14 103 7 7 1602 992 229 19 9 chr1 133431079 133431291 -63764141 + B3 SINE B2 2 215 -1 7 1603 664 294 112 27 chr1 133431417 133431676 -63763756 + B4A SINE B4 2 282 -10 7 1603 506 333 0 0 chr1 133431738 133431855 -63763577 - RSINE1 SINE B4 0 165 49 7 1603 537 217 343 30 chr1 133431856 133432022 -63763410 - ID_B1 SINE B4 -5 219 2 7 1603 492 186 0 0 chr1 133432041 133432159 -63763273 + (TG)n Simple_repeat Simple_repeat 2 119 0 7 1603 253 265 43 29 chr1 133433427 133433497 -63761935 + RSINE1 SINE B4 4 74 -91 7 1603 310 257 99 35 chr1 133433685 133433826 -63761606 + L1ME3B LINE L1 5783 5932 -308 7 1603 659 266 29 0 chr1 133433828 133433967 -63761465 + ID_B1 SINE B4 82 224 0 7 1603 274 279 10 79 chr1 133434663 133434764 -63760668 - B1F SINE Alu -7 142 49 7 1603 1032 117 97 28 chr1 133435049 133435225 -63760207 + B2_Mm2 SINE B2 1 188 -7 7 1603 482 252 110 0 chr1 133436216 133436343 -63759089 - B1F1 SINE Alu -8 141 1 7 1603 2820 155 97 4 chr1 133436356 133436880 -63758552 - RMER1B Other Other -15 1051 479 7 1603 376 224 7 10 chr1 133437238 133437325 -63758107 - ID4_ SINE ID -54 98 13 7 1603 192 179 0 0 chr1 133438597 133438636 -63756796 + CT-rich Low_complexity Low_complexity 1 39 0 7 1603 434 311 0 0 chr1 133438978 133439081 -63756351 - PB1D7 SINE Alu -17 103 1 7 1603 406 156 0 0 chr1 133439269 133439333 -63756099 - ID4 SINE ID -13 70 7 7 1603 190 200 66 98 chr1 133439379 133439440 -63755992 - L2c LINE L2 -1 3386 3328 7 1603 224 365 118 45 chr1 133439474 133439570 -63755862 - MIR SINE MIR -10 252 136 7 1603 294 29 0 0 chr1 133439570 133439605 -63755827 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 7 1603 1212 106 0 0 chr1 133439605 133439784 -63755648 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 7 1603 224 365 118 45 chr1 133439784 133439864 -63755568 - MIR SINE MIR -127 135 63 7 1603 323 317 73 0 chr1 133441671 133441794 -63753638 + ID_B1 SINE B4 93 224 0 7 1603 324 309 91 0 chr1 133441793 133441903 -63753529 + PB1D7 SINE Alu 1 120 0 7 1603 685 245 46 41 chr1 133441932 133442128 -63753304 + B3A SINE B2 2 198 0 7 1603 225 0 0 0 chr1 133442257 133442282 -63753150 + (CCA)n Simple_repeat Simple_repeat 2 26 0 7 1603 232 293 0 0 chr1 133442333 133442391 -63753041 - MLT1H LTR MaLR -159 396 339 7 1603 510 289 65 19 chr1 133442513 133442668 -63752764 - MLT1H LTR MaLR -347 202 41 7 1603 187 318 0 31 chr1 133443820 133443885 -63751547 + MIR3 SINE MIR 138 200 -8 7 1603 216 0 0 0 chr1 133443893 133443917 -63751515 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 7 1603 821 219 219 107 chr1 133443950 133444297 -63751135 - MLT1B LTR MaLR -2 388 3 7 1603 439 283 65 0 chr1 133444297 133444434 -63750998 + B1F SINE Alu 1 147 -2 7 1603 270 0 0 0 chr1 133446062 133446092 -63749340 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1603 636 226 60 0 chr1 133446164 133446297 -63749135 + B1_Mur1 SINE Alu 2 142 -7 7 1603 228 246 0 76 chr1 133446400 133446417 -63749015 - ID_B1 SINE B4 -43 181 169 7 1603 1590 224 111 43 chr1 133446417 133446948 -63748484 + RMER2 LTR ERV1 1 567 0 7 1603 228 246 0 76 chr1 133446948 133446996 -63748436 - ID_B1 SINE B4 -56 168 121 7 1603 857 155 14 14 chr1 133447126 133447270 -63748162 - B1_Mur3 SINE Alu -1 148 5 7 1603 3417 137 47 9 chr1 133447307 133447860 -63747572 + RMER1B Other Other 491 1064 -2 7 1603 1094 98 7 0 chr1 133447869 133448022 -63747410 + B2_Mm1t SINE B2 2 155 -38 7 1603 489 34 0 0 chr1 133448027 133448086 -63747346 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 7 1603 447 217 56 19 chr1 133448247 133448355 -63747077 + PB1D9 SINE Alu 9 120 0 7 1603 212 184 0 20 chr1 133448357 133448407 -63747025 + GA-rich Low_complexity Low_complexity 3 51 0 7 1603 322 288 128 0 chr1 133449616 133449741 -63745691 - MLT1A LTR MaLR -233 141 1 7 1603 207 346 28 9 chr1 133449742 133449850 -63745582 + L2a LINE L2 3268 3377 -49 7 1603 1026 168 99 0 chr1 133450169 133450360 -63745072 - B3 SINE B2 -5 211 2 7 1603 767 277 29 11 chr1 133451280 133451561 -63743871 - L1MB8 LINE L1 -30 6148 5863 7 1603 315 0 0 0 chr1 133451986 133452021 -63743411 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 7 1603 356 83 0 32 chr1 133452022 133452084 -63743348 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 7 1603 307 174 23 0 chr1 133452084 133452170 -63743262 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 1603 431 202 11 0 chr1 133452211 133452389 -63743043 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 7 1603 226 100 50 0 chr1 133452409 133452449 -63742983 + (TCTCTG)n Simple_repeat Simple_repeat 5 46 0 7 1603 375 55 18 0 chr1 133452509 133452564 -63742868 + ORR1B1 LTR MaLR 1 56 -338 7 1603 1896 151 6 0 chr1 133452568 133452887 -63742545 - ORR1A4 LTR MaLR -8 321 1 7 1603 616 144 55 2 chr1 133452887 133453002 -63742430 + ORR1B1 LTR MaLR 91 209 -185 7 1603 939 80 0 14 chr1 133453001 133453141 -63742291 + BGLII LTR ERVK 284 421 0 7 1603 317 141 47 0 chr1 133453148 133453212 -63742220 + ORR1B1 LTR MaLR 210 276 -118 7 1603 991 160 86 19 chr1 133453213 133453423 -63742009 - RLTR20A2 LTR ERVK -354 224 1 7 1603 594 280 15 0 chr1 133453423 133453553 -63741879 - RSINE1 SINE B4 -22 143 12 7 1603 554 326 34 75 chr1 133453788 133454080 -63741352 - RMER15-int LTR ERVL -2944 2055 1776 7 1603 543 76 219 0 chr1 133454201 133454320 -63741112 - RLTR47_MM LTR ERV1 -387 145 1 7 1603 305 295 26 0 chr1 133455065 133455143 -63740289 - Charlie12 DNA MER1_type -2793 80 1 7 1603 339 243 0 0 chr1 133455074 133455144 -63740288 + RMER30 DNA MER1_type 133 202 0 7 1603 1716 171 16 47 chr1 133455427 133455790 -63739642 + ORR1B2 LTR MaLR 1 352 -15 7 1603 309 163 0 0 chr1 133455815 133455864 -63739568 - RMER15-int LTR ERVL -3443 1556 1508 7 1603 2177 209 12 15 chr1 133455868 133456280 -63739152 - ETnERV2-int LTR ERVK -348 7058 6648 7 1603 508 299 54 36 chr1 133456278 133456510 -63738922 - MERVK26-int LTR ERVK -300 6619 6502 7 1603 477 270 8 8 chr1 133456510 133456637 -63738795 - RodERV21-int LTR ERV1 -428 4563 4437 7 1603 508 299 54 36 chr1 133456637 133456661 -63738771 - MERVK26-int LTR ERVK -300 6501 6489 7 1603 1253 111 5 10 chr1 133457297 133457498 -63737934 - MTB LTR MaLR -200 200 1 7 1603 1604 84 18 0 chr1 133457523 133457749 -63737683 + MTB LTR MaLR 171 400 0 7 1603 1147 246 71 9 chr1 133457829 133458169 -63737263 + ORR1A3 LTR MaLR 1 361 -13 7 1603 446 271 7 76 chr1 133458178 133458369 -63737063 + ORR1A3-int LTR MaLR 3 175 -1405 7 1603 656 218 27 49 chr1 133458355 133458538 -63736894 + ORR1A3-int LTR MaLR 806 984 -386 7 1603 2014 118 36 140 chr1 133458544 133459016 -63736416 - RLTR23 LTR ERV1 0 430 8 7 1603 1546 179 65 14 chr1 133459035 133459391 -63736041 + ORR1A3-int LTR MaLR 997 1370 0 7 1603 1966 97 21 52 chr1 133459391 133459719 -63735713 + ORR1A3 LTR MaLR 1 318 -8 7 1603 749 227 256 11 chr1 133459725 133460006 -63735426 + ORR1D1 LTR MaLR 25 374 0 7 1603 501 326 29 62 chr1 133460393 133460635 -63734797 - B4A SINE B4 -2 290 57 7 1603 473 215 123 24 chr1 133460639 133460726 -63734706 - RLTR20A1 LTR ERVK 0 568 476 7 1603 414 0 0 0 chr1 133460726 133460772 -63734660 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1603 473 210 122 23 chr1 133460772 133460835 -63734597 - RLTR20A1 LTR ERVK -98 480 403 7 1603 551 199 79 72 chr1 133460837 133460976 -63734456 - RLTR20A1 LTR ERVK -325 243 100 7 1603 1676 31 0 0 chr1 133460976 133461168 -63734264 - B2_Mm1t SINE B2 0 193 2 7 1603 551 160 65 77 chr1 133461168 133461255 -63734177 - RLTR20A1 LTR ERVK -434 117 10 7 1603 334 352 50 20 chr1 133461852 133462052 -63733380 - L2c LINE L2 -70 3317 3112 7 1603 4573 38 11 16 chr1 133462398 133462637 -63732795 - L1Md_F2 LINE L1 0 6582 6345 7 1603 1079 226 35 28 chr1 133462637 133462955 -63732477 - RLTR46 LTR ERVK 0 320 1 7 1603 4573 38 11 16 chr1 133462955 133463283 -63732149 - L1Md_F2 LINE L1 -238 6344 6018 7 1603 237 274 16 0 chr1 133463329 133463391 -63732041 + T-rich Low_complexity Low_complexity 4 66 0 7 1603 1272 62 91 0 chr1 133465211 133465369 -63730063 + B2_Mm1a SINE B2 2 175 -18 7 1603 198 0 0 0 chr1 133465369 133465391 -63730041 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 7 1603 1272 62 91 0 chr1 133465391 133465408 -63730024 + B2_Mm1a SINE B2 176 192 -1 7 1603 2108 113 268 14 chr1 133465430 133465851 -63729581 + RLTR11A LTR ERVK 1 528 0 7 1603 509 159 0 0 chr1 133466603 133466691 -63728741 - Charlie21a DNA MER1_type -503 710 623 7 1603 214 152 43 0 chr1 133466867 133466913 -63728519 + (TTG)n Simple_repeat Simple_repeat 1 48 0 7 1603 713 105 9 9 chr1 133466913 133467028 -63728404 - B1_Mus1 SINE Alu -2 146 32 7 1603 382 282 19 97 chr1 133467028 133467129 -63728303 - ID_B1 SINE B4 -1 223 25 7 1603 516 297 93 46 chr1 133467188 133467401 -63728031 + RMER10A LTR ERVL 12 242 -200 7 1603 273 75 0 0 chr1 133467401 133467441 -63727991 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 7 1603 516 297 93 46 chr1 133467441 133467615 -63727817 + RMER10A LTR ERVL 243 416 -26 7 1603 630 39 0 0 chr1 133468324 133468401 -63727031 + (TTCTC)n Simple_repeat Simple_repeat 2 78 0 8 1603 273 259 22 66 chr1 133468410 133468501 -63726931 - PB1D10 SINE Alu -25 92 6 8 1603 836 327 123 81 chr1 133468533 133469259 -63726173 - Charlie2b DNA MER1_type -1393 1389 663 8 1603 198 0 0 0 chr1 133469259 133469281 -63726151 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1603 836 327 123 81 chr1 133469281 133469648 -63725784 - Charlie2b DNA MER1_type -2120 662 250 8 1603 1548 119 8 12 chr1 133469668 133469922 -63725510 - ORR1A4 LTR MaLR -75 254 2 8 1603 882 221 8 98 chr1 133470095 133470331 -63725101 - B3 SINE B2 -1 215 1 8 1603 1938 71 139 0 chr1 133470362 133470643 -63724789 + LSU-rRNA_Hsa rRNA rRNA 138 457 -4578 8 1603 587 279 26 69 chr1 133471793 133471982 -63723450 + MER21B LTR ERV1 588 768 -95 8 1603 282 191 16 16 chr1 133472053 133472117 -63723315 - RMER5 LTR ERV1 -15 519 456 8 1603 1066 146 15 56 chr1 133472124 133472320 -63723112 - B2_Mm2 SINE B2 -5 190 3 8 1603 783 189 0 33 chr1 133472409 133472562 -63722870 + B1_Mur2 SINE Alu 2 149 0 8 1603 285 29 0 0 chr1 133472563 133472597 -63722835 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1603 908 264 65 19 chr1 133472615 133472936 -63722496 - RMER5 LTR ERV1 -82 452 117 8 1603 274 316 108 43 chr1 133472987 133473126 -63722306 - B1F SINE Alu -1 148 1 8 1603 448 252 17 51 chr1 133473010 133473127 -63722305 - ID_B1 SINE B4 -31 193 81 8 1603 2377 123 10 8 chr1 133473184 133473569 -63721863 - ORR1B1 LTR MaLR -8 386 1 8 1603 270 333 52 0 chr1 133473766 133473862 -63721570 - MIR SINE MIR -63 145 45 8 1603 419 36 18 0 chr1 133473901 133473957 -63721475 - ORR1A1 LTR MaLR 0 346 290 8 1603 3186 59 20 4 chr1 133473968 133474427 -63721005 - ORR1A1-int LTR MaLR -1326 466 1 8 1603 534 261 7 28 chr1 133475432 133475574 -63719858 + B3A SINE B2 1 139 -59 8 1603 586 305 68 11 chr1 133476567 133476876 -63718556 + L1MA5 LINE L1 5934 6269 -31 8 1603 303 254 49 36 chr1 133477317 133477422 -63718010 - B1F SINE Alu 0 120 11 8 1603 228 182 54 18 chr1 133477657 133477713 -63717719 + MER5B DNA MER1_type 1 58 -120 8 1603 294 230 79 26 chr1 133477799 133477875 -63717557 - B3 SINE B2 -113 103 24 8 1603 299 233 151 0 chr1 133478338 133478411 -63717021 - ID_B1 SINE B4 -2 222 139 8 1603 230 333 126 0 chr1 133478416 133478527 -63716905 + MER5A DNA MER1_type 1 125 -64 8 1603 498 197 144 139 chr1 133479066 133479267 -63716165 + B3 SINE B2 1 202 -14 8 1603 477 0 0 0 chr1 133479267 133479320 -63716112 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 8 1603 643 203 0 17 chr1 133479330 133479450 -63715982 + PB1D9 SINE Alu 3 120 0 8 1603 235 355 64 0 chr1 133480090 133480235 -63715197 - MIR SINE MIR -90 178 26 8 1603 1642 170 89 57 chr1 133482057 133482463 -63712969 + RMER1C Other Other 924 1342 0 8 1603 501 17 0 0 chr1 133482480 133482538 -63712894 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1603 375 296 28 0 chr1 133482608 133482716 -63712716 + PB1D10 SINE Alu 1 111 -6 8 1603 979 149 229 0 chr1 133483170 133483345 -63712087 - B3 SINE B2 0 216 2 8 1603 255 274 14 0 chr1 133484590 133484663 -63710769 - Charlie8 DNA MER1_type 0 2428 2355 8 1603 235 286 12 135 chr1 133484781 133484951 -63710481 - Charlie8 DNA MER1_type -2217 211 63 8 1603 445 237 0 0 chr1 133485009 133485102 -63710330 + B1F SINE Alu 23 115 -34 8 1603 237 229 0 0 chr1 133485654 133485702 -63709730 - B1F SINE Alu -89 60 13 8 1603 695 217 147 43 chr1 133485902 133486133 -63709299 - MTD LTR MaLR 0 419 140 8 1603 3718 117 46 20 chr1 133486250 133486862 -63708570 + Lx2B LINE L1 6365 6992 -8 8 1603 673 123 9 17 chr1 133486869 133486985 -63708447 - MTD LTR MaLR -304 115 1 8 1603 280 259 128 9 chr1 133487286 133487395 -63708037 - MIRb SINE MIR -19 249 128 8 1603 1208 48 7 0 chr1 133487466 133487611 -63707821 + B1_Mm SINE Alu 2 147 0 8 1603 592 236 8 8 chr1 133487938 133488062 -63707370 + ID_B1 SINE B4 94 217 -7 8 1603 292 154 58 0 chr1 133488016 133488068 -63707364 + PB1D7 SINE Alu 65 119 -1 8 1603 501 17 0 0 chr1 133488069 133488127 -63707305 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1603 751 267 6 9 chr1 133489197 133489383 -63706049 + B3A SINE B2 5 186 -7 8 1603 213 247 13 27 chr1 133489841 133489916 -63705516 + C-rich Low_complexity Low_complexity 4 77 0 8 1603 926 83 8 0 chr1 133490206 133490339 -63705093 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 8 1603 1454 55 22 0 chr1 133490339 133490520 -63704912 - B2_Mm2 SINE B2 -10 185 1 8 1603 350 241 173 14 chr1 133491831 133491970 -63703462 + MLT2B4 LTR ERVL 264 424 -132 8 1603 345 293 47 47 chr1 133492296 133492316 -63703116 + L1MC5 LINE L1 7712 7726 -235 8 1603 2278 158 36 29 chr1 133492316 133492733 -63702699 + MTC LTR MaLR 1 420 -1 8 1603 345 293 47 47 chr1 133492733 133492927 -63702505 + L1MC5 LINE L1 7727 7926 -35 8 1603 775 224 34 6 chr1 133493620 133493795 -63701637 + B3A SINE B2 1 180 -18 8 1603 200 132 26 0 chr1 133493799 133493837 -63701595 + (CATA)n Simple_repeat Simple_repeat 1 39 0 8 1603 969 101 32 102 chr1 133494234 133494443 -63700989 + B2_Mm2 SINE B2 1 189 -4 8 1603 369 0 0 0 chr1 133495410 133495451 -63699981 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1603 249 33 0 0 chr1 133495451 133495480 -63699952 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1603 226 333 0 18 chr1 133496197 133496307 -63699125 + CT-rich Low_complexity Low_complexity 4 111 0 8 1603 242 260 82 10 chr1 133497374 133497471 -63697961 - MLT1A0 LTR MaLR 0 408 305 8 1603 256 260 43 96 chr1 133497625 133497740 -63697692 - MLT1A0 LTR MaLR -254 111 3 8 1603 582 176 119 18 chr1 133497805 133497973 -63697459 - B2_Mm2 SINE B2 -3 192 8 8 1603 189 268 36 0 chr1 133498099 133498155 -63697277 - MIR3 SINE MIR 0 208 151 8 1603 220 357 34 40 chr1 133498251 133498426 -63697006 - MIR3 SINE MIR -20 188 15 8 1603 728 279 23 0 chr1 133498432 133498604 -63696828 - B3 SINE B2 -5 211 36 8 1603 354 336 8 8 chr1 133498779 133498902 -63696530 - ID_B1 SINE B4 -24 200 78 8 1603 262 266 0 37 chr1 133499084 133499166 -63696266 - MIRc SINE MIR -133 135 57 8 1603 200 274 214 0 chr1 133500389 133500473 -63694959 + L2b LINE L2 3272 3373 -2 1 1603 1634 266 18 24 chr1 133500649 133501031 -63694401 + RCHARR1 DNA MER1_type 12 391 -583 2 1603 1324 123 0 0 chr1 133501030 133501217 -63694215 + URR1B DNA MER1_type 39 225 0 3 1603 697 261 86 68 chr1 133501298 133501577 -63693855 - MLT1F2 LTR MaLR -62 498 215 4 1603 441 221 98 0 chr1 133501711 133501833 -63693599 + RCHARR1 DNA MER1_type 394 527 -447 2 1603 802 283 82 34 chr1 133501838 133502105 -63693327 + B4A SINE B4 7 286 -6 5 1603 1124 248 100 0 chr1 133502174 133502473 -63692959 + RCHARR1 DNA MER1_type 519 847 -127 2 1603 1350 74 5 60 chr1 133502476 133502677 -63692755 + B2_Mm2 SINE B2 2 191 -4 6 1603 432 308 167 27 chr1 133504297 133504811 -63690621 + L1_Mur3 LINE L1 1229 1814 -4066 7 1603 451 210 88 8 chr1 133504976 133505101 -63690331 + RCHARR1 DNA MER1_type 840 974 0 2 1603 191 350 81 20 chr1 133505317 133505416 -63690016 + MIR SINE MIR 31 135 -73 8 1603 226 0 59 0 chr1 133505451 133505485 -63689947 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 9 1603 3202 77 0 12 chr1 133505530 133505950 -63689482 - L1Md_F2 LINE L1 -23 6559 6145 1 1603 240 258 206 0 chr1 133507151 133507248 -63688184 + MIR3 SINE MIR 89 205 -3 1 1603 820 201 82 0 chr1 133507936 133508095 -63687337 + MTD LTR MaLR 39 210 -209 1 1603 773 167 157 0 chr1 133508098 133508296 -63687136 + Lx9 LINE L1 7415 7643 -1 1 1603 363 167 0 0 chr1 133508342 133508408 -63687024 + GA-rich Low_complexity Low_complexity 3 68 0 1 1603 1363 158 9 13 chr1 133508408 133508632 -63686800 + MTD LTR MaLR 197 419 0 1 1603 300 325 25 33 chr1 133509075 133509196 -63686236 + B1F SINE Alu 30 149 0 1 1603 213 328 15 30 chr1 133509214 133509280 -63686152 + ID2 SINE ID 2 66 -17 1 1603 1023 121 7 0 chr1 133509919 133510068 -63685364 + B1_Mur4 SINE Alu 1 150 0 1 1603 213 39 0 0 chr1 133510173 133510199 -63685233 + (GGCTG)n Simple_repeat Simple_repeat 4 29 0 1 1603 611 208 72 39 chr1 133510199 133510368 -63685064 + Lx6 LINE L1 7288 7428 -32 1 1603 189 107 0 0 chr1 133510409 133510437 -63684995 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1603 542 165 235 0 chr1 133510451 133510566 -63684866 + B1_Mur4 SINE Alu 1 142 -8 2 1603 483 316 210 4 chr1 133511346 133511575 -63683857 + Tigger7 DNA MER2_type 1 276 -2215 2 1603 3971 107 98 26 chr1 133511721 133512363 -63683069 + RLTR19B LTR ERVK 28 715 0 2 1603 293 257 0 54 chr1 133512408 133512482 -63682950 - B4A SINE B4 -6 286 217 2 1603 603 291 59 24 chr1 133512518 133512698 -63682734 - B4A SINE B4 0 292 82 2 1603 1919 206 8 25 chr1 133512749 133513147 -63682285 - Lx5 LINE L1 -3 7047 6657 2 1603 1446 122 5 13 chr1 133513347 133513571 -63681861 - URR1A DNA MER1_type 0 226 5 2 1603 467 262 43 75 chr1 133513884 133513901 -63681531 + B4A SINE B4 69 80 -212 2 1603 972 144 7 0 chr1 133513901 133514047 -63681385 + B1_Mus2 SINE Alu 1 147 0 2 1603 1274 40 0 0 chr1 133514221 133514369 -63681063 - B1_Mus1 SINE Alu 0 148 1 2 1603 306 0 0 0 chr1 133514467 133514501 -63680931 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1603 408 20 0 0 chr1 133514501 133514549 -63680883 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1603 765 213 103 6 chr1 133514552 133514727 -63680705 + B3A SINE B2 6 197 -1 3 1603 999 121 0 21 chr1 133514745 133514889 -63680543 - B1_Mur3 SINE Alu -7 142 2 3 1603 242 239 65 78 chr1 133514926 133515003 -63680429 - PB1D10 SINE Alu -58 91 16 3 1603 213 222 0 22 chr1 133515133 133515179 -63680253 + CT-rich Low_complexity Low_complexity 3 47 0 3 1603 740 205 99 0 chr1 133515247 133515408 -63680024 + B3 SINE B2 16 192 -24 3 1603 558 79 0 0 chr1 133515418 133515494 -63679938 + (TGAA)n Simple_repeat Simple_repeat 3 78 0 3 1603 341 216 167 22 chr1 133515526 133515616 -63679816 + RSINE1 SINE B4 12 114 -51 3 1603 387 0 0 0 chr1 133515617 133515660 -63679772 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1603 1670 256 10 13 chr1 133516338 133516730 -63678702 + Lx6 LINE L1 7043 7433 -27 4 1603 442 238 18 62 chr1 133517145 133517257 -63678175 + PB1D10 SINE Alu 1 107 -10 4 1603 203 189 19 0 chr1 133517258 133517311 -63678121 + GA-rich Low_complexity Low_complexity 2 55 0 4 1603 279 303 40 60 chr1 133517824 133517975 -63677457 + BC1_Mm scRNA scRNA 3 150 -2 4 1603 1541 184 6 62 chr1 133518301 133518626 -63676806 - RMER1A Other Other -73 957 651 4 1603 288 85 0 0 chr1 133518622 133518669 -63676763 + RMER1B Other Other 1019 1065 -1 4 1603 260 363 18 0 chr1 133518995 133519108 -63676324 + MIRb SINE MIR 19 133 -135 4 1603 1045 180 45 10 chr1 133519243 133519445 -63675987 - B3 SINE B2 -5 211 3 4 1603 234 0 0 0 chr1 133519685 133519711 -63675721 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1603 467 267 0 37 chr1 133520878 133520987 -63674445 + RSINE1 SINE B4 41 145 -20 4 1603 333 0 0 0 chr1 133520988 133521025 -63674407 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1603 249 257 28 14 chr1 133521526 133521597 -63673835 + MER97c DNA MER1_type? 108 179 -911 5 1603 466 302 168 47 chr1 133521683 133521874 -63673558 + B4A SINE B4 55 268 -24 5 1603 279 265 29 0 chr1 133522397 133522465 -63672967 - MER81 DNA AcHobo -42 72 3 5 1603 1010 129 113 91 chr1 133522522 133522743 -63672689 + URR1A DNA MER1_type 1 226 0 5 1603 294 258 54 0 chr1 133522909 133523002 -63672430 - MER20 DNA MER1_type -90 129 32 5 1603 477 164 75 129 chr1 133523096 133523243 -63672189 + B1_Mur2 SINE Alu 1 139 -10 5 1603 1197 101 0 0 chr1 133523251 133523430 -63672002 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 1603 1915 173 28 46 chr1 133523692 133524085 -63671347 + RMER10B LTR ERVL 13 398 0 5 1603 271 60 20 20 chr1 133524392 133524443 -63670989 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1603 1186 68 0 0 chr1 133524443 133524590 -63670842 - B1_Mus2 SINE Alu 0 147 1 6 1603 237 321 135 18 chr1 133524712 133524823 -63670609 + MLT1A1 LTR MaLR 6 129 -279 6 1603 403 312 102 71 chr1 133524860 133524940 -63670492 + ORR1E LTR MaLR 97 185 -174 6 1603 227 29 57 0 chr1 133524940 133524975 -63670457 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 6 1603 403 312 102 71 chr1 133524975 133525149 -63670283 + ORR1E LTR MaLR 186 359 0 6 1603 758 281 138 21 chr1 133525296 133525752 -63669680 + Charlie1b DNA MER1_type 6 523 0 6 1603 3413 35 5 0 chr1 133525800 133526194 -63669238 + MTA_Mm LTR MaLR 1 396 0 6 1603 7787 46 4 2 chr1 133526194 133527172 -63668260 + MTA_Mm-int LTR MaLR 1 980 -118 6 1603 287 49 24 0 chr1 133528069 133528110 -63667322 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1603 1091 0 0 0 chr1 133529663 133529797 -63665635 + MTA_Mm-int LTR MaLR 965 1098 0 6 1603 3407 41 5 0 chr1 133529797 133530191 -63665241 + MTA_Mm LTR MaLR 1 396 0 6 1603 757 276 90 57 chr1 133530512 133530812 -63664620 + MTEb LTR MaLR 1 310 -69 6 1603 300 302 84 72 chr1 133530813 133531063 -63664369 + HAL1-3A_ME LINE L1 1082 1334 -1524 6 1603 793 182 4 183 chr1 133531358 133531438 -63663994 - RMER10B LTR ERVL 0 398 338 6 1603 399 127 0 0 chr1 133531438 133531501 -63663931 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1603 793 182 4 183 chr1 133531501 133531682 -63663750 - RMER10B LTR ERVL -61 337 184 6 1603 6525 150 20 11 chr1 133531683 133532805 -63662627 + L1_Mm LINE L1 4260 5392 -491 7 1603 1905 124 56 0 chr1 133532805 133533111 -63662321 + Lx LINE L1 6332 6654 0 7 1603 1010 172 55 6 chr1 133533111 133533292 -63662140 - RMER10B LTR ERVL -208 190 1 6 1603 273 260 11 0 chr1 133533345 133533406 -63662026 - PB1D10 SINE Alu -35 85 19 7 1603 309 26 0 0 chr1 133533576 133533614 -63661818 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1603 274 343 67 0 chr1 133533681 133533786 -63661646 + MIRm SINE MIR 165 276 0 7 1603 1169 69 0 14 chr1 133533961 133534108 -63661324 + B1_Mus1 SINE Alu 2 146 -2 7 1603 302 0 0 26 chr1 133534112 133534151 -63661281 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 7 1603 1575 48 5 0 chr1 133534152 133534340 -63661092 + B2_Mm1t SINE B2 3 191 -2 7 1603 607 284 14 11 chr1 133534653 133534815 -63660617 - ID_B1 SINE B4 -63 229 72 7 1603 217 294 137 45 chr1 133534892 133535086 -63660346 - MIR SINE MIR -64 204 9 8 1603 264 200 17 0 chr1 133535340 133535400 -63660032 - B1F SINE Alu -2 147 87 8 1603 450 262 170 84 chr1 133535410 133535501 -63659931 + Zaphod2 DNA Tip100 365 476 -3048 8 1603 342 0 0 0 chr1 133535501 133535539 -63659893 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1603 243 0 0 0 chr1 133535539 133535565 -63659867 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1603 450 262 170 84 chr1 133535565 133535733 -63659699 + Zaphod2 DNA Tip100 477 669 -2855 8 1603 784 181 23 0 chr1 133535733 133535866 -63659566 + B1_Mur1 SINE Alu 3 138 -11 8 1603 261 0 0 0 chr1 133535866 133535895 -63659537 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1603 450 262 170 84 chr1 133535895 133535952 -63659480 + Zaphod2 DNA Tip100 670 716 -2808 8 1603 1128 206 19 0 chr1 133535952 133536161 -63659271 + B3 SINE B2 1 213 -3 8 1603 450 304 184 116 chr1 133536161 133537124 -63658308 + Zaphod2 DNA Tip100 469 1577 -1947 8 1603 254 264 88 35 chr1 133537124 133537238 -63658194 + PB1 SINE Alu 1 120 -7 8 1603 356 306 185 118 chr1 133537238 133538107 -63657325 + Zaphod2 DNA Tip100 1578 2433 -1091 8 1603 500 66 13 0 chr1 133538107 133538183 -63657249 - L1Md_F2 LINE L1 -2 6580 6504 8 1603 356 306 185 118 chr1 133538183 133538219 -63657213 + Zaphod2 DNA Tip100 2434 2464 -1060 8 1603 272 120 20 0 chr1 133538276 133538326 -63657106 + (TTTCG)n Simple_repeat Simple_repeat 1 51 0 9 1603 247 231 0 55 chr1 133538334 133538389 -63657043 - tRNA-Ala-GCY_ tRNA tRNA -7 68 17 9 1603 518 257 121 71 chr1 133538426 133538665 -63656767 + Zaphod2 DNA Tip100 2490 2740 -784 8 1603 207 0 0 0 chr1 133538703 133538726 -63656706 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1603 1976 119 22 26 chr1 133538750 133539061 -63656371 - Lx3B LINE L1 0 6973 6664 9 1603 530 134 0 0 chr1 133539061 133539143 -63656289 + 4.5SRNA scRNA scRNA 6 87 -7 9 1603 6604 20 1 9 chr1 133539143 133539891 -63655541 + RLTR4_Mm LTR ERV1 1 742 0 9 1603 68753 15 5 0 chr1 133539891 133547451 -63647981 + RLTR4_MM-int LTR ERV1 1 7601 0 9 1603 6614 20 1 7 chr1 133547451 133548197 -63647235 + RLTR4_Mm LTR ERV1 1 742 0 9 1603 542 265 80 11 chr1 133548197 133548384 -63647048 + Zaphod2 DNA Tip100 2764 2963 -561 8 1603 402 219 0 0 chr1 133548388 133548470 -63646962 + B4A SINE B4 2 83 -209 9 1603 683 199 6 93 chr1 133548470 133548631 -63646801 + B1_Mus2 SINE Alu 1 147 0 9 1603 1230 94 7 3 chr1 133548631 133548930 -63646502 + (GAAA)n Simple_repeat Simple_repeat 1 300 0 9 1603 459 0 0 0 chr1 133549071 133549122 -63646310 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1603 1230 40 0 20 chr1 133549145 133549156 -63646276 - B1_Mus1 SINE Alu 0 148 140 1 1603 261 0 0 0 chr1 133549156 133549185 -63646247 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1603 1230 40 0 20 chr1 133549185 133549324 -63646108 - B1_Mus1 SINE Alu -9 139 1 1 1603 259 346 47 16 chr1 133549369 133549498 -63645934 + Zaphod2 DNA Tip100 3018 3150 -374 8 1603 294 254 197 58 chr1 133549517 133549705 -63645727 + Zaphod2 DNA Tip100 3194 3407 -117 8 1603 195 194 0 0 chr1 133551096 133551127 -63644305 - MIR SINE MIR -6 256 226 1 1603 28 29 0 0 chr1 133551377 133551412 -63644020 + AT_rich Low_complexity Low_complexity 1 35 0 1 1603 461 97 14 0 chr1 133551412 133551484 -63643948 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1603 338 268 101 2 chr1 133551484 133551606 -63643826 - B3A SINE B2 -50 166 27 1 1603 200 217 0 0 chr1 133551847 133551893 -63643539 + T-rich Low_complexity Low_complexity 4 49 0 1 1603 323 220 27 0 chr1 133551894 133551973 -63643459 - B1_Mur4 SINE Alu -7 143 60 1 1603 417 212 25 0 chr1 133552671 133552751 -63642681 - ID4 SINE ID -1 82 1 1 1603 291 317 29 9 chr1 133552760 133552865 -63642567 - PB1D10 SINE Alu -1 116 10 1 1603 675 292 0 0 chr1 133552908 133553052 -63642380 - RSINE1 SINE B4 -11 154 11 1 1603 213 263 11 66 chr1 133553408 133553503 -63641929 + MIRc SINE MIR 76 161 -107 1 1603 642 260 40 27 chr1 133553596 133553746 -63641686 + RSINE1 SINE B4 2 153 -12 1 1603 438 79 0 0 chr1 133553747 133553810 -63641622 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1603 327 85 0 0 chr1 133553811 133553858 -63641574 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1603 626 143 31 85 chr1 133554137 133554267 -63641165 - ORR1D1 LTR MaLR -225 149 27 1 1603 458 231 10 20 chr1 133554563 133554669 -63640763 - B1_Mur1 SINE Alu -13 136 2 1 1603 873 142 0 98 chr1 133555478 133555642 -63639790 - URR1A DNA MER1_type -1 225 78 1 1603 380 307 155 10 chr1 133555688 133555895 -63639537 + MIRb SINE MIR 10 246 -22 1 1603 334 307 131 0 chr1 133555914 133556051 -63639381 - MIR3 SINE MIR -45 163 9 1 1603 313 325 69 13 chr1 133556916 133557075 -63638357 + MIR3 SINE MIR 17 184 -24 1 1603 431 260 52 0 chr1 133557725 133557821 -63637611 + MLT1C LTR MaLR 367 467 0 1 1603 423 0 0 0 chr1 133558279 133558326 -63637106 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1603 674 193 8 0 chr1 133561849 133561968 -63633464 + B3 SINE B2 2 121 -95 1 1603 803 180 14 7 chr1 133562070 133562210 -63633222 + B1_Mur1 SINE Alu 1 141 -8 1 1604 375 375 88 0 chr1 133562438 133562654 -63632778 + MLT2F LTR ERVL 196 430 -233 1 1604 496 309 184 82 chr1 133562854 133563002 -63632430 + L1M5 LINE L1 3046 3164 -2982 1 1604 1116 62 0 58 chr1 133563002 133563157 -63632275 + B1_Mus2 SINE Alu 1 146 -1 1 1604 496 309 184 82 chr1 133563157 133563420 -63632012 + L1M5 LINE L1 3165 3499 -2647 1 1604 783 217 0 0 chr1 133563564 133563702 -63631730 + B1_Mur2 SINE Alu 2 139 -10 1 1604 918 275 10 0 chr1 133563712 133563905 -63631527 + ID_B1 SINE B4 15 209 -15 1 1604 813 247 13 64 chr1 133564001 133564065 -63631367 + URR1A DNA MER1_type 1 60 -166 1 1604 360 0 0 0 chr1 133564065 133564105 -63631327 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1604 813 247 13 64 chr1 133564105 133564274 -63631158 + URR1A DNA MER1_type 61 221 -5 1 1604 273 29 0 0 chr1 133564949 133564983 -63630449 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1604 251 333 14 0 chr1 133565322 133565391 -63630041 + ID4_ SINE ID 8 77 -6 1 1604 666 224 192 26 chr1 133565393 133565664 -63629768 + L1MB2 LINE L1 5832 6147 -24 1 1604 1348 186 76 174 chr1 133566110 133566599 -63628833 + RMER4A LTR ERVK 17 457 -9 1 1604 489 173 62 18 chr1 133568076 133568188 -63627244 - PB1D10 SINE Alu 0 117 1 1 1604 239 284 24 47 chr1 133568240 133568325 -63627107 + Charlie9 DNA MER1_type 2661 2743 -14 1 1604 328 263 181 2 chr1 133568332 133568429 -63627003 + B1F SINE Alu 1 115 -5 1 1604 816 193 36 0 chr1 133568438 133568578 -63626854 + B1_Mm SINE Alu 2 146 -1 1 1604 522 0 0 0 chr1 133568665 133568723 -63626709 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1604 263 240 56 65 chr1 133569404 133569511 -63625921 - MIRb SINE MIR -77 191 86 1 1604 776 189 106 16 chr1 133569511 133569699 -63625733 + B3 SINE B2 1 205 -11 1 1604 1361 86 11 5 chr1 133569701 133569888 -63625544 - B2_Mm2 SINE B2 -7 188 1 1 1604 226 252 182 0 chr1 133570769 133570868 -63624564 + PB1D10 SINE Alu 1 117 0 1 1604 333 345 51 28 chr1 133571758 133571934 -63623498 - L1MC5 LINE L1 -44 7917 7738 1 1604 473 256 92 17 chr1 133572190 133572309 -63623123 + B1F1 SINE Alu 21 148 -1 1 1604 298 292 15 51 chr1 133572634 133572771 -63622661 - L1MC5 LINE L1 -839 7122 6991 1 1604 675 246 14 14 chr1 133573209 133573357 -63622075 + RSINE1 SINE B4 3 150 -15 1 1604 204 40 0 0 chr1 133573358 133573383 -63622049 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1604 380 200 0 0 chr1 133573483 133573558 -63621874 + PB1D10 SINE Alu 41 115 -2 1 1604 553 68 14 0 chr1 133574025 133574099 -63621333 + B2_Mm1t SINE B2 1 75 -118 1 1604 884 157 75 40 chr1 133574104 133574277 -63621155 + B2_Mm1t SINE B2 2 180 -13 1 1604 325 132 331 30 chr1 133574308 133574406 -63621026 + B2_Mm2 SINE B2 47 177 -18 1 1604 1070 56 0 7 chr1 133574410 133574553 -63620879 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 1 1604 1129 82 0 0 chr1 133574565 133574711 -63620721 + B1_Mus1 SINE Alu 3 148 0 1 1604 1556 194 56 0 chr1 133574833 133575117 -63620315 + ORR1D1 LTR MaLR 1 300 -74 1 1604 227 279 24 37 chr1 133575735 133575817 -63619615 + B4A SINE B4 66 146 -146 1 1604 392 152 99 25 chr1 133575758 133575839 -63619593 + PB1D10 SINE Alu 5 91 -26 1 1604 1668 177 260 18 chr1 133576631 133577073 -63618359 + RMER15 LTR ERVL 27 575 0 1 1604 36010 35 0 0 chr1 133577119 133582571 -63612861 + L1Md_T LINE L1 41 5589 -297 1 1604 9159 6 0 0 chr1 133582571 133583567 -63611865 + L1Md_T LINE L1 5590 6585 0 1 1604 282 211 169 0 chr1 133583613 133583684 -63611748 - 5S rRNA rRNA -30 91 9 1 1604 414 0 0 0 chr1 133584041 133584087 -63611345 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1604 236 139 51 89 chr1 133584437 133584595 -63610837 + (GTGTG)n Simple_repeat Simple_repeat 1 152 0 1 1604 295 149 15 15 chr1 133584780 133584841 -63610591 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1604 486 0 0 0 chr1 133584841 133584895 -63610537 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1604 295 149 15 15 chr1 133584895 133584901 -63610531 + (TG)n Simple_repeat Simple_repeat 2 7 0 1 1604 405 0 0 0 chr1 133585997 133586042 -63609390 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1604 322 263 254 33 chr1 133586070 133586192 -63609240 - RSINE1 SINE B4 -14 151 3 1 1604 215 301 0 27 chr1 133586397 133586472 -63608960 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 1 1604 21 36 0 0 chr1 133588891 133588919 -63606513 + AT_rich Low_complexity Low_complexity 1 28 0 1 1604 400 289 106 0 chr1 133589030 133589134 -63606298 + PB1 SINE Alu 6 120 -7 1 1604 1478 261 33 19 chr1 133589248 133589611 -63605821 - MTEa LTR MaLR -7 372 5 1 1604 354 315 70 16 chr1 133589624 133589811 -63605621 + MIR SINE MIR 21 217 -45 1 1604 519 17 0 0 chr1 133590292 133590352 -63605080 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1604 1368 67 0 0 chr1 133590837 133591106 -63604326 + (TGGA)n Simple_repeat Simple_repeat 1 269 0 1 1604 194 88 16 81 chr1 133591411 133591473 -63603959 + (TTAA)n Simple_repeat Simple_repeat 2 59 0 1 1604 271 234 0 0 chr1 133591518 133591565 -63603867 + ID4_ SINE ID 29 75 -8 1 1604 4440 213 24 75 chr1 133591574 133592575 -63602857 + RMER1B Other Other 147 928 -138 1 1604 1224 104 10 25 chr1 133592575 133592772 -63602660 - B2_Mm2 SINE B2 -1 194 1 1 1604 4440 191 21 88 chr1 133592772 133592910 -63602522 + RMER1B Other Other 929 1050 -16 1 1604 313 256 134 8 chr1 133592926 133593060 -63602372 - L1M5 LINE L1 -437 5687 5537 1 1604 717 125 0 0 chr1 133594155 133594275 -63601157 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 1604 522 0 0 0 chr1 133594298 133594356 -63601076 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1604 239 271 28 28 chr1 133594694 133594766 -63600666 + MER58B DNA MER1_type 240 311 -30 1 1604 423 0 0 0 chr1 133595214 133595261 -63600171 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1 1604 186 272 180 22 chr1 133596696 133596835 -63598597 - L2 LINE L2 -2791 628 468 1 1604 1153 37 15 0 chr1 133596864 133597000 -63598432 + B1_Mm SINE Alu 1 138 -9 1 1604 279 0 0 0 chr1 133597000 133597031 -63598401 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1604 362 300 23 0 chr1 133597639 133597769 -63597663 + L1MB3 LINE L1 6039 6171 -12 1 1604 936 193 66 52 chr1 133598081 133598294 -63597138 - B3 SINE B2 0 216 1 1 1604 233 35 0 0 chr1 133599442 133599471 -63595961 + URR1B DNA MER1_type 1 29 -196 1 1604 347 252 44 61 chr1 133599520 133599634 -63595798 + URR1B DNA MER1_type 112 223 -2 1 1604 441 299 32 70 chr1 133600403 133600590 -63594842 + MIR SINE MIR 48 227 -35 1 1604 203 305 93 19 chr1 133600856 133600893 -63594539 + MIRb SINE MIR 84 124 -144 1 1604 1387 152 9 18 chr1 133600893 133601120 -63594312 - URR1B DNA MER1_type 0 225 1 1 1604 203 305 93 19 chr1 133601120 133601189 -63594243 + MIRb SINE MIR 125 198 -70 1 1604 966 147 45 0 chr1 133601189 133601366 -63594066 + B2_Mm2 SINE B2 1 185 -10 1 1604 180 0 0 0 chr1 133601516 133601536 -63593896 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1 1604 257 220 0 33 chr1 133601645 133601706 -63593726 + (TATG)n Simple_repeat Simple_repeat 1 59 0 1 1604 706 283 99 20 chr1 133601735 133601987 -63593445 - B4A SINE B4 -16 276 5 1 1604 259 272 62 80 chr1 133601997 133602109 -63593323 - MLT1A0 LTR MaLR -254 111 2 1 1604 299 319 34 8 chr1 133604509 133604626 -63590806 - PB1D9 SINE Alu 0 120 1 1 1604 396 88 0 0 chr1 133604666 133604723 -63590709 - RLTR15 LTR ERVK -302 57 1 1 1604 21 0 0 0 chr1 133605325 133605346 -63590086 + AT_rich Low_complexity Low_complexity 1 21 0 2 1604 1271 167 62 25 chr1 133605346 133605586 -63589846 - Lx3B LINE L1 -1 6972 6724 2 1604 291 269 89 37 chr1 133605678 133605832 -63589600 + MIRb SINE MIR 20 189 -79 2 1604 697 252 29 29 chr1 133607207 133607415 -63588017 + B3 SINE B2 3 210 -6 2 1604 226 188 232 24 chr1 133607465 133607547 -63587885 + PB1D9 SINE Alu 21 119 -1 2 1604 233 272 179 29 chr1 133608954 133609094 -63586338 - L2a LINE L2 -245 3181 3021 2 1604 216 0 0 0 chr1 133609328 133609352 -63586080 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1604 700 290 152 8 chr1 133609934 133610198 -63585234 + Tigger7 DNA MER2_type 1 302 -2189 2 1604 794 288 96 20 chr1 133610186 133610487 -63584945 + Tigger7 DNA MER2_type 2129 2452 -39 2 1604 25 0 0 0 chr1 133610537 133610562 -63584870 + AT_rich Low_complexity Low_complexity 1 25 0 2 1604 1121 240 62 56 chr1 133612050 133612407 -63583025 - Lx8 LINE L1 0 7473 7115 2 1604 1412 80 27 0 chr1 133612429 133612617 -63582815 - B2_Mm2 SINE B2 0 195 3 2 1604 204 231 0 0 chr1 133612906 133612945 -63582487 + GA-rich Low_complexity Low_complexity 2 40 0 2 1604 1125 211 15 0 chr1 133613363 133613567 -63581865 - B3 SINE B2 -6 210 4 2 1604 249 303 39 29 chr1 133613747 133613849 -63581583 + Lx4B LINE L1 5693 5795 -1263 2 1604 538 155 0 17 chr1 133613901 133614019 -63581413 + GA-rich Low_complexity Low_complexity 3 118 0 2 1604 228 143 0 0 chr1 133614385 133614420 -63581012 + L2a LINE L2 3378 3412 -14 2 1604 939 169 7 0 chr1 133614449 133614597 -63580835 - B1_Mur3 SINE Alu 0 149 1 2 1604 209 108 27 0 chr1 133614762 133614799 -63580633 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2 1604 25 0 0 0 chr1 133615450 133615475 -63579957 + AT_rich Low_complexity Low_complexity 1 25 0 2 1604 275 314 56 0 chr1 133615623 133615750 -63579682 - MIR SINE MIR -85 177 50 2 1604 461 198 10 0 chr1 133616553 133616649 -63578783 + PB1D10 SINE Alu 14 110 -7 2 1604 772 235 48 62 chr1 133616670 133616879 -63578553 + B3A SINE B2 5 210 -6 2 1604 3391 40 5 5 chr1 133616901 133617301 -63578131 - MTB LTR MaLR 0 400 1 2 1604 2550 135 63 10 chr1 133617654 133618050 -63577382 - MTC LTR MaLR 0 421 5 2 1604 270 81 0 0 chr1 133618228 133618265 -63577167 + (CCCTAA)n Simple_repeat Simple_repeat 6 42 0 2 1604 1047 56 7 7 chr1 133618282 133618427 -63577005 + L1Md_A LINE L1 6436 6580 -2 2 1604 270 81 0 0 chr1 133618459 133618496 -63576936 + (CCCTAA)n Simple_repeat Simple_repeat 6 42 0 2 1604 362 227 188 40 chr1 133619093 133619194 -63576238 + PB1D10 SINE Alu 1 116 -1 2 1604 554 230 0 11 chr1 133620820 133620874 -63574558 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 2 1604 1077 123 0 0 chr1 133620874 133621053 -63574379 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 2 1604 554 233 0 5 chr1 133621053 133621320 -63574112 + (TGAA)n Simple_repeat Simple_repeat 1 265 0 2 1604 378 0 0 0 chr1 133622197 133622239 -63573193 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1604 558 0 0 0 chr1 133622243 133622305 -63573127 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1604 1276 154 5 5 chr1 133623685 133623906 -63571526 + RMER10A LTR ERVL 1 221 -221 2 1604 828 104 0 0 chr1 133623931 133624056 -63571376 + (TC)n Simple_repeat Simple_repeat 1 125 0 2 1604 252 206 67 27 chr1 133624056 133624131 -63571301 + RMER10A LTR ERVL 320 397 -1 2 1604 305 331 48 36 chr1 133625110 133625276 -63570156 + HAL1b LINE L1 1842 2009 0 2 1604 432 0 0 0 chr1 133626141 133626189 -63569243 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1604 302 323 0 38 chr1 133628314 133628446 -63566986 + G-rich Low_complexity Low_complexity 1 127 0 2 1604 242 271 127 14 chr1 133629293 133629364 -63566068 + ID2 SINE ID 2 80 -3 2 1604 285 358 93 43 chr1 133629463 133629980 -63565452 + L1ME2z LINE L1 5869 6411 -33 2 1604 582 149 9 9 chr1 133630995 133631103 -63564329 - B1_Mur2 SINE Alu 0 149 42 2 1604 245 0 0 160 chr1 133631106 133631231 -63564201 + (CTCTG)n Simple_repeat Simple_repeat 1 105 0 2 1604 324 185 0 0 chr1 133631240 133631294 -63564138 - B1_Mus2 SINE Alu -93 54 1 2 1604 466 276 102 0 chr1 133631303 133631430 -63564002 - ID_B1 SINE B4 -1 223 84 2 1604 396 0 0 0 chr1 133631756 133631800 -63563632 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1604 293 369 70 65 chr1 133632697 133632777 -63562655 + ORR1E LTR MaLR 2 76 -283 2 1604 1041 155 209 0 chr1 133632777 133632964 -63562468 + URR1A DNA MER1_type 1 226 0 2 1604 293 369 70 65 chr1 133632964 133633239 -63562193 + ORR1E LTR MaLR 77 359 0 2 1604 359 297 27 0 chr1 133633575 133633686 -63561746 - MIR SINE MIR -52 210 97 2 1604 483 257 0 35 chr1 133633691 133633804 -63561628 + PB1D10 SINE Alu 1 109 -8 2 1604 259 264 56 39 chr1 133635398 133635525 -63559907 - MIRc SINE MIR -121 155 32 2 1604 216 97 0 0 chr1 133636084 133636115 -63559317 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 2 1604 342 152 0 0 chr1 133636125 133636184 -63559248 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1604 485 211 0 37 chr1 133636190 133636298 -63559134 - RSINE1 SINE B4 -60 105 2 2 1604 255 348 26 18 chr1 133636552 133636666 -63558766 + MIR3 SINE MIR 91 205 -3 2 1604 387 0 0 0 chr1 133637481 133637524 -63557908 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1604 759 52 0 0 chr1 133637869 133637965 -63557467 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 2 1604 227 340 28 9 chr1 133638589 133638696 -63556736 + MIRb SINE MIR 92 200 -68 2 1604 190 152 0 61 chr1 133638979 133639028 -63556404 + L4 LINE RTE 999 1044 -985 2 1604 299 91 0 0 chr1 133639533 133639577 -63555855 - L2a LINE L2 -1 3425 3382 2 1604 306 0 0 0 chr1 133643209 133643243 -63552189 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1604 732 191 68 0 chr1 133643513 133643660 -63551772 - B3 SINE B2 -57 159 3 2 1604 192 77 0 0 chr1 133644960 133644986 -63550446 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1604 309 240 93 0 chr1 133645587 133645662 -63549770 - MIR SINE MIR -60 202 121 2 1604 198 275 149 32 chr1 133646040 133646134 -63549298 - MIRc SINE MIR -50 218 114 2 1604 218 235 0 19 chr1 133648260 133648312 -63547120 + MIR SINE MIR 205 255 -7 2 1604 285 29 0 0 chr1 133648312 133648346 -63547086 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2 1604 288 0 0 0 chr1 133651085 133651117 -63544315 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1604 313 300 54 56 chr1 133651187 133651473 -63543959 - L2b LINE L2 -181 3206 2910 2 1604 200 139 47 0 chr1 133651707 133651750 -63543682 - MIR SINE MIR -64 144 100 2 1604 451 202 22 0 chr1 133652402 133652491 -63542941 + B3A SINE B2 64 154 -44 2 1604 388 77 15 15 chr1 133652491 133652557 -63542875 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1604 305 181 43 108 chr1 133654130 133654223 -63541209 + ZP3AR Satellite Satellite 52 138 -74 2 1604 285 192 0 0 chr1 133654180 133654232 -63541200 + ID4_ SINE ID 1 52 -31 2 1604 220 246 43 14 chr1 133654232 133654250 -63541182 + B4 SINE B4 1 72 -220 2 1604 813 145 19 6 chr1 133654347 133654507 -63540925 + CT-rich Low_complexity Low_complexity 3 164 0 2 1604 1020 259 64 36 chr1 133654590 133654870 -63540562 - B4A SINE B4 -2 290 3 2 1604 976 78 0 58 chr1 133656081 133656272 -63539160 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1604 230 387 35 21 chr1 133656400 133656545 -63538887 + MIRb SINE MIR 66 212 -56 2 1604 914 153 58 196 chr1 133657336 133657596 -63537836 + URR1A DNA MER1_type 1 224 -2 2 1604 253 296 30 0 chr1 133658002 133658086 -63537346 + ID4_ SINE ID 2 87 -65 2 1604 1052 119 6 0 chr1 133659030 133659190 -63536242 + B2_Mm2 SINE B2 2 162 -33 2 1604 369 0 0 0 chr1 133659190 133659231 -63536201 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 1604 465 110 0 0 chr1 133660103 133660176 -63535256 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 1604 217 186 47 0 chr1 133661508 133661551 -63533881 + CT-rich Low_complexity Low_complexity 1 45 0 2 1604 194 333 18 45 chr1 133661791 133661901 -63533531 + MIR3 SINE MIR 97 203 -5 2 1604 4353 82 59 3 chr1 133663123 133663712 -63531720 - L1_Mus4 LINE L1 -2 6634 6013 2 1604 659 248 65 7 chr1 133663822 133663976 -63531456 - RSINE1 SINE B4 0 165 3 2 1604 279 0 0 0 chr1 133664677 133664708 -63530724 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 2 1604 859 181 0 0 chr1 133664709 133664847 -63530585 - B1_Mur3 SINE Alu -11 138 1 2 1604 273 309 136 16 chr1 133665002 133665127 -63530305 - L2a LINE L2 -1 3425 3286 2 1604 243 0 0 0 chr1 133667069 133667096 -63528336 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1604 450 0 0 0 chr1 133667096 133667146 -63528286 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1604 449 269 0 0 chr1 133668361 133668463 -63526969 + ID_B1 SINE B4 83 180 -44 2 1604 397 240 0 96 chr1 133668369 133668484 -63526948 + PB1D10 SINE Alu 6 109 -8 2 1604 213 39 0 0 chr1 133668509 133668535 -63526897 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1604 1822 140 22 6 chr1 133668607 133668923 -63526509 + ORR1A4 LTR MaLR 1 321 -8 2 1604 12045 112 6 117 chr1 133668927 133671136 -63524296 + ORR1A4-int LTR MaLR 1 1963 0 2 1604 1751 132 12 65 chr1 133671136 133671476 -63523956 + ORR1A4 LTR MaLR 1 322 -7 2 1604 1017 302 25 33 chr1 133672199 133672559 -63522873 + ORR1E LTR MaLR 1 357 -2 2 1604 673 152 0 0 chr1 133672998 133673103 -63522329 - B3 SINE B2 -111 105 1 2 1604 1395 210 60 38 chr1 133673321 133673671 -63521761 + MTD LTR MaLR 1 358 -61 2 1604 1002 212 171 18 chr1 133673671 133673998 -63521434 - MTD LTR MaLR 0 419 43 2 1604 243 133 43 22 chr1 133674025 133674071 -63521361 + MTD LTR MaLR 361 407 -14 2 1604 584 240 49 19 chr1 133674276 133674505 -63520927 + L1M4b LINE L1 2223 2474 -4860 3 1604 180 0 0 0 chr1 133674555 133674575 -63520857 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1604 2269 155 34 14 chr1 133674578 133674991 -63520441 + MTC LTR MaLR 1 421 0 3 1604 419 267 0 0 chr1 133675103 133675193 -63520239 + PB1D10 SINE Alu 11 100 -17 3 1604 419 276 121 0 chr1 133675545 133675661 -63519771 - B3 SINE B2 -86 130 1 3 1604 262 300 117 0 chr1 133675674 133675794 -63519638 + L1M4b LINE L1 3577 3710 -3296 3 1604 307 241 74 179 chr1 133676022 133676126 -63519306 - B4 SINE B4 -108 184 101 3 1604 1143 75 0 13 chr1 133676126 133676275 -63519157 - B1_Mus1 SINE Alu -1 147 1 3 1604 307 241 74 179 chr1 133676275 133676332 -63519100 - B4 SINE B4 -192 100 40 3 1604 2185 139 44 56 chr1 133676368 133676780 -63518652 + MTB_Mm LTR MaLR 1 407 0 3 1604 5623 157 45 14 chr1 133676780 133677866 -63517566 + MTB_Mm-int LTR MaLR 3 1122 -136 3 1604 11433 145 28 6 chr1 133677872 133678418 -63517014 + Lx5 LINE L1 1505 2060 -3817 3 1604 267 133 0 0 chr1 133678418 133678463 -63516969 + (CTA)n Simple_repeat Simple_repeat 2 46 0 3 1604 11433 145 28 6 chr1 133678463 133679917 -63515515 + Lx5 LINE L1 2061 3549 -2328 3 1604 1841 89 26 4 chr1 133679917 133680188 -63515244 + Lx5 LINE L1 4003 4279 -1598 3 1604 4595 152 65 11 chr1 133680171 133681686 -63513746 + Lx5 LINE L1 4625 6264 -786 3 1604 6409 153 43 155 chr1 133681686 133683191 -63512241 + RLTR21 LTR ERVK 1 1290 -282 3 1604 279 0 0 0 chr1 133683191 133683222 -63512210 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1604 417 39 0 0 chr1 133683222 133683272 -63512160 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1604 6409 153 43 155 chr1 133683272 133683536 -63511896 + RLTR21 LTR ERVK 1291 1571 -1 3 1604 3610 185 81 27 chr1 133683537 133684287 -63511145 + Lx5 LINE L1 6260 7050 0 3 1604 228 262 5 95 chr1 133684448 133684602 -63510830 + A-rich Low_complexity Low_complexity 6 145 0 3 1604 2107 154 185 37 chr1 133684602 133685061 -63510371 - RLTR11A2 LTR ERVK 0 527 1 3 1604 228 262 5 95 chr1 133685061 133685080 -63510352 + A-rich Low_complexity Low_complexity 146 163 0 3 1604 5186 112 47 1 chr1 133685080 133685843 -63509589 + Lx3B LINE L1 6176 6973 0 3 1604 228 262 5 95 chr1 133685843 133685858 -63509574 + A-rich Low_complexity Low_complexity 164 178 0 3 1604 9550 258 29 36 chr1 133685899 133687102 -63508330 + MYSERV6-int LTR ERVK 333 1553 -7406 3 1604 1202 55 0 0 chr1 133687102 133687248 -63508184 + B1_Mm SINE Alu 2 147 0 3 1604 9550 258 29 36 chr1 133687248 133688508 -63506924 + MYSERV6-int LTR ERVK 1554 2788 -6171 3 1604 1448 69 0 21 chr1 133688508 133688701 -63506731 + B2_Mm2 SINE B2 3 191 -4 3 1604 9550 258 29 36 chr1 133688701 133689238 -63506194 + MYSERV6-int LTR ERVK 2789 3313 -5646 3 1604 3141 112 11 13 chr1 133689273 133689797 -63505635 - MTB-int LTR MaLR -575 523 1 3 1604 3240 53 2 5 chr1 133689797 133690198 -63505234 - MTB LTR MaLR 0 400 1 3 1604 427 240 25 91 chr1 133690215 133690412 -63505020 - RLTR15 LTR ERVK -128 231 48 3 1604 1450 66 16 0 chr1 133690565 133690748 -63504684 + B2_Mm2 SINE B2 1 186 -9 3 1604 336 24 0 0 chr1 133690856 133690897 -63504535 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 3 1604 465 263 26 0 chr1 133690904 133691018 -63504414 + Lx7 LINE L1 7118 7234 -462 3 1604 672 155 37 92 chr1 133691327 133691490 -63503942 + MYSERV6-int LTR ERVK 4118 4271 -1866 3 1604 277 286 41 35 chr1 133691657 133691802 -63503630 + RLTR14-int LTR ERV1 4891 5036 -281 3 1604 204 308 0 0 chr1 133692360 133692412 -63503020 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1604 216 0 0 0 chr1 133692450 133692474 -63502958 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1604 309 26 0 0 chr1 133692474 133692511 -63502921 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1604 282 109 0 158 chr1 133692880 133692956 -63502476 - Lx2B LINE L1 0 6997 6934 3 200 4549 111 16 18 chr1 133692945 133693623 -63501809 - Lx2B LINE L1 -196 6804 6128 3 1605 360 0 0 0 chr1 133693756 133693796 -63501636 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1605 362 209 15 15 chr1 133694893 133695029 -63500403 + CT-rich Low_complexity Low_complexity 3 138 0 3 1605 890 204 94 35 chr1 133695910 133696113 -63499319 + B3 SINE B2 1 215 -1 3 1605 273 271 71 0 chr1 133696133 133696203 -63499229 + MER2 DNA MER2_type 4 78 -267 3 1605 449 240 87 0 chr1 133696205 133696299 -63499133 + PB1D10 SINE Alu 1 103 -14 3 1605 447 19 0 0 chr1 133696299 133696351 -63499081 + (CAAAA)n Simple_repeat Simple_repeat 5 56 0 3 1605 2182 138 56 3 chr1 133696364 133696756 -63498676 + MTC LTR MaLR 1 413 -8 3 1605 409 200 10 31 chr1 133696799 133696897 -63498535 - PB1D10 SINE Alu -1 116 21 3 1605 456 67 0 0 chr1 133697085 133697145 -63498287 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1605 942 198 5 88 chr1 133697145 133697350 -63498082 - B3 SINE B2 -28 188 1 3 1605 279 0 0 0 chr1 133697418 133697449 -63497983 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1605 22 0 0 0 chr1 133697461 133697483 -63497949 + AT_rich Low_complexity Low_complexity 1 22 0 3 1605 2720 144 5 5 chr1 133699844 133700264 -63495168 + MTC LTR MaLR 1 420 -1 3 1605 559 265 0 0 chr1 133702463 133702595 -63492837 - B1_Mur1 SINE Alu -5 144 13 3 1605 239 159 68 0 chr1 133704071 133704115 -63491317 + ID_B1 SINE B4 174 220 -4 3 1605 297 0 0 0 chr1 133704151 133704184 -63491248 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1605 706 236 42 42 chr1 133704377 133704567 -63490865 + B4A SINE B4 1 190 -102 3 1605 296 231 18 88 chr1 133704562 133704676 -63490756 + MT2B LTR ERVL 158 263 -338 3 1605 546 238 15 44 chr1 133704579 133704677 -63490755 + B1_Mur1 SINE Alu 11 110 -39 3 1605 2085 109 114 12 chr1 133704677 133705020 -63490412 - ORR1C1 LTR MaLR 0 378 1 3 1605 546 238 15 44 chr1 133705020 133705057 -63490375 + B1_Mur1 SINE Alu 111 142 -7 3 1605 451 226 3 9 chr1 133705942 133706056 -63489376 - PB1D10 SINE Alu -1 116 1 3 1605 237 325 24 57 chr1 133706057 133706181 -63489251 - L2a LINE L2 -44 3382 3263 3 1605 326 237 140 0 chr1 133706354 133706447 -63488985 - PB1D9 SINE Alu -13 107 2 3 1605 414 228 0 12 chr1 133707576 133707656 -63487776 - ID4_ SINE ID 0 83 5 3 1605 770 141 103 7 chr1 133710178 133710314 -63485118 + B1_Mur4 SINE Alu 2 150 0 3 1605 919 172 161 0 chr1 133710883 133711069 -63484363 - B3 SINE B2 0 216 1 3 1605 3032 48 2 0 chr1 133711113 133711507 -63483925 - MTB LTR MaLR 0 400 6 3 1605 735 197 0 0 chr1 133711894 133712036 -63483396 + B1_Mur2 SINE Alu 1 142 -7 3 1605 2068 103 29 0 chr1 133715269 133715579 -63479853 + ORR1A2 LTR MaLR 1 319 -8 3 1605 452 143 436 24 chr1 133715794 133715964 -63479468 - RMER4B LTR ERVK 0 585 346 3 1605 830 96 0 0 chr1 133716053 133716178 -63479254 - RMER4B LTR ERVK -412 173 49 3 1605 978 248 9 18 chr1 133716236 133716454 -63478978 - B3 SINE B2 0 216 1 3 1605 22 0 0 0 chr1 133716513 133716535 -63478897 + AT_rich Low_complexity Low_complexity 1 22 0 3 1605 256 363 212 0 chr1 133716535 133716728 -63478704 - Zaphod DNA Tip100 -3787 244 11 3 1605 3028 88 104 83 chr1 133716747 133717255 -63478177 + MURVY-LTR LTR ERV1 1 519 0 3 1605 1182 220 7 75 chr1 133717575 133717901 -63477531 + L1_Mur3 LINE L1 5339 5679 -495 3 1605 628 242 6 75 chr1 133718051 133718225 -63477207 + RSINE1 SINE B4 3 164 -1 3 1605 1159 64 0 0 chr1 133718252 133718393 -63477039 + B1_Mus2 SINE Alu 2 142 -5 3 1605 414 0 0 0 chr1 133718396 133718442 -63476990 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 1605 432 0 0 0 chr1 133718444 133718492 -63476940 + (TTA)n Simple_repeat Simple_repeat 2 49 0 3 1605 340 239 75 0 chr1 133718492 133718559 -63476873 + ID4_ SINE ID 1 72 -11 3 1605 336 102 0 0 chr1 133718566 133718615 -63476817 + (GGA)n Simple_repeat Simple_repeat 2 50 0 3 1605 1548 58 0 10 chr1 133718770 133718962 -63476470 - B2_Mm1a SINE B2 -3 190 1 3 1605 515 264 94 55 chr1 133718996 133719252 -63476180 - L1M3 LINE L1 -510 5670 5405 3 1605 184 330 77 17 chr1 133719892 133720009 -63475423 - MIRb SINE MIR -136 132 9 3 1605 336 119 0 0 chr1 133720856 133720915 -63474517 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1605 435 248 111 40 chr1 133720996 133721122 -63474310 - RSINE1 SINE B4 -28 137 3 3 1605 272 259 0 0 chr1 133721589 133721647 -63473785 - L2c LINE L2 -19 3368 3311 3 1605 545 219 189 6 chr1 133721713 133721942 -63473490 + L1ME3A LINE L1 5208 5470 -703 3 1605 577 222 0 53 chr1 133721948 133722081 -63473351 - B1_Mur1 SINE Alu 0 149 24 3 1605 440 312 72 0 chr1 133722103 133722241 -63473191 + L1ME3A LINE L1 5480 5627 -535 3 1605 731 175 25 106 chr1 133722261 133722421 -63473011 + B1_Mur4 SINE Alu 4 150 0 3 1605 820 55 9 0 chr1 133722550 133722660 -63472772 + BC1_Mm scRNA scRNA 1 111 -41 3 1605 337 314 67 10 chr1 133722768 133722961 -63472471 + L1ME3A LINE L1 5967 6170 -3 3 1605 356 278 48 80 chr1 133723041 133723166 -63472266 - B1F2 SINE Alu -4 145 25 3 1605 189 0 0 0 chr1 133725544 133725565 -63469867 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1605 198 0 0 0 chr1 133728910 133728932 -63466500 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 3 1605 439 215 0 0 chr1 133729075 133729154 -63466278 + ID4_ SINE ID 2 80 -3 3 1605 199 189 27 0 chr1 133729286 133729323 -63466109 - MIR SINE MIR -115 147 110 3 1605 311 222 118 32 chr1 133731828 133731921 -63463511 - PB1D10 SINE Alu -16 101 1 3 1605 390 291 29 0 chr1 133732621 133732724 -63462708 - PB1D10 SINE Alu -1 116 11 3 1605 240 303 39 13 chr1 133732662 133732739 -63462693 - ID_B1 SINE B4 -69 155 77 3 1605 984 280 45 50 chr1 133732823 133732890 -63462542 - L1MB2 LINE L1 -151 6032 5967 3 1605 513 0 0 0 chr1 133732890 133732947 -63462485 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1605 234 0 0 0 chr1 133732947 133732972 -63462460 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1605 1011 236 42 99 chr1 133732972 133733373 -63462059 - L1MB2 LINE L1 -217 5966 5594 3 1605 405 0 0 0 chr1 133733377 133733422 -63462010 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1605 746 275 50 139 chr1 133733444 133733541 -63461891 - B4A SINE B4 0 292 221 3 1605 1008 210 29 20 chr1 133733541 133733745 -63461687 - B3 SINE B2 -10 206 1 3 1605 746 275 50 139 chr1 133733745 133733964 -63461468 - B4A SINE B4 -72 220 4 3 1605 967 99 14 41 chr1 133734015 133734162 -63461270 - B1_Mus1 SINE Alu 0 148 6 3 1605 331 187 48 137 chr1 133734053 133734177 -63461255 - MT2B LTR ERVL -337 264 152 3 1605 307 233 130 22 chr1 133734169 133734261 -63461171 - PB1D9 SINE Alu -2 118 17 3 1605 608 256 39 22 chr1 133734263 133734443 -63460989 - L1MB2 LINE L1 -569 5602 5420 3 1605 254 238 6 62 chr1 133734891 133734984 -63460448 + MIRc SINE MIR 109 191 -71 3 1605 203 253 42 3 chr1 133735029 133735113 -63460319 - MIRc SINE MIR -182 86 4 4 1605 410 238 36 62 chr1 133738235 133738347 -63457085 + PB1D10 SINE Alu 1 109 -8 4 1605 264 230 125 39 chr1 133739722 133739826 -63455606 - LTR33A_ LTR ERVL -101 430 318 4 1605 1046 32 0 0 chr1 133742199 133742325 -63453107 + B1_Mus2 SINE Alu 21 146 -1 4 1605 270 345 24 48 chr1 133742459 133742584 -63452848 - MER5A1 DNA MER1_type -26 140 19 4 1605 381 75 0 0 chr1 133745912 133745965 -63449467 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1605 498 258 31 62 chr1 133746082 133746276 -63449156 + B3A SINE B2 1 188 -10 4 1605 286 299 81 20 chr1 133746454 133746553 -63448879 - ORR1E LTR MaLR -248 111 7 4 1605 857 236 78 10 chr1 133746859 133747052 -63448380 - ID_B1 SINE B4 -3 221 16 4 1605 185 232 145 0 chr1 133747404 133747473 -63447959 - MIR SINE MIR -93 169 91 4 1605 664 242 8 0 chr1 133747703 133747835 -63447597 + B1F2 SINE Alu 9 141 -8 4 1605 204 125 0 0 chr1 133747859 133747891 -63447541 + (GGGAGA)n Simple_repeat Simple_repeat 3 34 0 4 1605 1219 118 0 0 chr1 133748436 133748606 -63446826 + B2_Mm2 SINE B2 2 171 -24 4 1605 230 146 24 0 chr1 133748635 133748676 -63446756 + B4 SINE B4 41 82 -210 4 1605 454 61 0 11 chr1 133748640 133748754 -63446678 + B2_Mm2 SINE B2 47 195 0 4 1605 801 195 129 35 chr1 133748841 133749043 -63446389 + ID_B1 SINE B4 2 222 -2 4 1605 277 283 0 16 chr1 133749046 133749107 -63446325 + B1F2 SINE Alu 1 60 -89 4 1605 1428 89 16 0 chr1 133749432 133749622 -63445810 + B2_Mm2 SINE B2 1 193 -2 4 1605 216 0 0 0 chr1 133749922 133749946 -63445486 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1605 207 0 0 0 chr1 133750130 133750153 -63445279 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1605 1025 75 75 0 chr1 133750155 133750288 -63445144 - B1_Mm SINE Alu -4 143 1 4 1605 889 128 28 28 chr1 133750620 133750765 -63444667 - B1_Mur3 SINE Alu -2 147 3 4 1605 534 16 0 0 chr1 133751763 133751826 -63443606 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1605 296 298 12 12 chr1 133752127 133752212 -63443220 + ID SINE ID 1 85 -139 4 1605 543 224 37 9 chr1 133752696 133752804 -63442628 + PB1D9 SINE Alu 1 111 -9 4 1605 344 231 169 25 chr1 133752863 133753023 -63442409 - MTEa LTR MaLR -2 377 195 4 1605 1152 146 229 8 chr1 133753027 133753400 -63442032 + RMER6B LTR ERVK 1 456 -5 4 1605 302 302 134 8 chr1 133753421 133753548 -63441884 - MTEa LTR MaLR -196 183 41 4 1605 24 0 0 0 chr1 133753558 133753582 -63441850 + AT_rich Low_complexity Low_complexity 1 24 0 4 1605 464 157 48 0 chr1 133753744 133753891 -63441541 + (TA)n Simple_repeat Simple_repeat 1 154 0 4 1605 651 253 32 13 chr1 133754032 133754188 -63441244 + RSINE1 SINE B4 5 163 -2 4 1605 899 218 45 5 chr1 133754304 133754502 -63440930 + B3 SINE B2 1 206 -10 4 1605 2241 183 59 37 chr1 133754502 133754562 -63440870 - RLTR18 LTR ERVK -98 518 473 4 1605 1385 82 39 0 chr1 133754562 133754744 -63440688 - B2_Mm2 SINE B2 -6 189 1 4 1605 2241 183 59 37 chr1 133754744 133755143 -63440289 - RLTR18 LTR ERVK -144 472 49 4 1605 248 154 37 37 chr1 133755158 133755212 -63440220 - MTEa LTR MaLR -323 56 3 4 1605 345 206 16 211 chr1 133755575 133755621 -63439811 - B3 SINE B2 -117 99 63 4 1605 1238 48 7 0 chr1 133755621 133755766 -63439666 + B1_Mus2 SINE Alu 2 147 0 4 1605 345 206 16 211 chr1 133755766 133755842 -63439590 - B3 SINE B2 -154 62 1 4 1605 897 142 0 7 chr1 133756129 133756264 -63439168 - B1_Mus1 SINE Alu -9 139 6 4 1605 238 282 42 108 chr1 133756264 133756286 -63439146 + YREP_Mm Unknown Unknown 215 327 -1485 4 1605 280 324 28 0 chr1 133756387 133756458 -63438974 + ID4_ SINE ID 1 73 -10 4 1605 270 233 33 0 chr1 133756569 133756629 -63438803 + B1F SINE Alu 26 87 -62 4 1605 33 0 0 0 chr1 133756639 133756672 -63438760 + AT_rich Low_complexity Low_complexity 1 33 0 4 1605 6254 62 26 5 chr1 133757428 133758284 -63437148 - L1Md_F2 LINE L1 -11 6571 5691 4 1605 399 285 95 43 chr1 133758324 133758694 -63436738 - MTD LTR MaLR -4 415 5 4 1605 712 249 63 11 chr1 133758740 133758915 -63436517 - ID_B1 SINE B4 -36 188 5 4 1605 901 133 10 10 chr1 133758931 133759129 -63436303 + (CATA)n Simple_repeat Simple_repeat 1 198 0 4 1605 254 319 22 11 chr1 133759227 133759319 -63436113 - RMER15 LTR ERVL -106 469 377 4 1605 685 170 41 41 chr1 133759339 133759486 -63435946 + B1_Mur3 SINE Alu 2 148 -1 4 1605 1492 265 90 55 chr1 133759490 133760054 -63435378 - Lx8 LINE L1 -251 7222 6639 4 1605 1178 168 4 79 chr1 133760074 133760301 -63435131 + B3 SINE B2 6 215 -1 4 1605 667 279 166 0 chr1 133760307 133760572 -63434860 - Lx8 LINE L1 -833 6640 6332 4 1605 5107 85 4 7 chr1 133760606 133761281 -63434151 + Lx3_Mus LINE L1 6337 7009 0 4 1605 1226 36 0 0 chr1 133761360 133761498 -63433934 + B1_Mus2 SINE Alu 1 138 -9 4 1605 207 0 0 0 chr1 133761498 133761521 -63433911 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1605 1213 76 122 0 chr1 133761714 133761886 -63433546 + B2_Mm2 SINE B2 2 194 -1 4 1605 1236 48 7 0 chr1 133761886 133762030 -63433402 + B1_Mus2 SINE Alu 1 146 -1 4 1605 203 0 0 36 chr1 133762035 133762063 -63433369 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1605 251 273 208 15 chr1 133762502 133762560 -63432872 + ID_B1 SINE B4 70 224 0 4 1605 272 250 56 0 chr1 133762560 133762632 -63432800 + PB1D10 SINE Alu 42 117 0 4 1605 237 132 0 0 chr1 133762634 133762672 -63432760 + (GGA)n Simple_repeat Simple_repeat 2 39 0 4 1605 386 217 121 0 chr1 133762672 133762755 -63432677 + ID_B1 SINE B4 2 94 -130 4 1605 266 0 29 0 chr1 133762828 133762862 -63432570 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 4 1605 311 298 9 71 chr1 133763502 133763614 -63431818 - ID_B1 SINE B4 -41 183 79 4 1605 225 119 0 0 chr1 133764949 133764991 -63430441 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1605 1247 48 0 7 chr1 133765070 133765217 -63430215 - B1_Mus2 SINE Alu 0 147 2 4 1605 309 271 62 20 chr1 133765584 133765708 -63429724 + PB1D7 SINE Alu 7 83 -37 4 1605 351 0 0 0 chr1 133766263 133766302 -63429130 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1605 288 0 0 0 chr1 133766310 133766342 -63429090 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1605 268 304 97 18 chr1 133766987 133767101 -63428331 - MIR SINE MIR -113 149 27 4 1605 610 265 24 47 chr1 133767751 133767921 -63427511 - B3 SINE B2 -24 192 27 4 1605 1585 37 21 0 chr1 133767921 133768109 -63427323 - B2_Mm1a SINE B2 0 193 2 4 1605 415 290 33 66 chr1 133768109 133768150 -63427282 - B3A SINE B2 -156 42 2 4 1605 288 0 0 0 chr1 133768183 133768215 -63427217 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 4 1605 406 73 0 22 chr1 133768229 133768295 -63427137 - B2_Mm2 SINE B2 -107 109 47 4 1605 1297 85 17 0 chr1 133768336 133768512 -63426920 - B2_Mm1t SINE B2 -12 181 3 4 1605 213 121 0 0 chr1 133769007 133769040 -63426392 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1605 232 259 177 105 chr1 133769576 133769693 -63425739 + B2_Mm2 SINE B2 2 110 -85 4 1605 513 68 0 0 chr1 133769693 133769767 -63425665 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1605 232 259 177 105 chr1 133769767 133769830 -63425602 + B2_Mm2 SINE B2 111 195 0 4 1605 252 281 16 0 chr1 133769832 133769896 -63425536 + B4A SINE B4 81 145 -147 4 1605 449 264 9 36 chr1 133769845 133769955 -63425477 + PB1D10 SINE Alu 9 115 -2 4 1605 879 123 13 46 chr1 133769959 133770112 -63425320 + B1_Mur3 SINE Alu 1 148 -1 4 1605 535 217 101 40 chr1 133770434 133770583 -63424849 + B3 SINE B2 3 160 -56 4 1605 973 189 81 10 chr1 133770626 133770824 -63424608 + B3 SINE B2 5 216 0 4 1605 532 129 313 54 chr1 133770884 133771031 -63424401 - B2_Mm2 SINE B2 -9 186 2 4 1605 894 60 17 0 chr1 133771560 133771676 -63423756 - B1_Mus1 SINE Alu -30 118 1 4 1605 237 237 37 73 chr1 133771813 133771895 -63423537 - MER5B DNA MER1_type -98 80 2 4 1605 728 243 59 5 chr1 133771900 133772086 -63423346 + B3A SINE B2 1 196 -2 4 1605 244 258 133 10 chr1 133772144 133772242 -63423190 + PB1D10 SINE Alu 7 116 -1 4 1605 1330 86 43 0 chr1 133772245 133772431 -63423001 + B2_Mm2 SINE B2 2 195 0 4 1605 338 245 66 5 chr1 133772630 133772827 -63422605 + RMER17C LTR ERVK 67 275 -135 4 1605 283 318 36 18 chr1 133773111 133773223 -63422209 - PB1D10 SINE Alu -1 116 3 4 1605 1072 225 26 41 chr1 133773652 133774029 -63421403 - RLTR33 LTR ERVK -50 628 175 4 1605 769 294 16 0 chr1 133774048 133774235 -63421197 - ID_B1 SINE B4 -34 190 1 4 1605 810 194 14 0 chr1 133774316 133774460 -63420972 - B1_Mus2 SINE Alu -1 146 1 4 1605 342 102 0 0 chr1 133774538 133774587 -63420845 - ID_B1 SINE B4 -2 222 174 4 1605 281 180 66 0 chr1 133774587 133774599 -63420833 - PB1D10 SINE Alu -2 115 51 4 1605 1203 82 0 0 chr1 133774772 133774919 -63420513 + B1_Mus1 SINE Alu 2 148 0 4 1605 231 36 0 0 chr1 133774919 133774947 -63420485 + (GAGAA)n Simple_repeat Simple_repeat 3 30 0 4 1605 318 289 129 76 chr1 133774955 133775249 -63420183 + B4 SINE B4 1 292 0 4 1605 1306 102 6 0 chr1 133775288 133775465 -63419967 + B2_Mm1t SINE B2 2 179 -14 4 1605 422 90 0 0 chr1 133775500 133775567 -63419865 + B2_Mm1a SINE B2 127 193 0 4 1605 343 277 149 0 chr1 133775611 133775705 -63419727 + B4A SINE B4 2 109 -183 4 1605 1281 34 0 0 chr1 133775785 133775932 -63419500 + B1_Mm SINE Alu 1 147 0 4 1605 216 0 0 0 chr1 133775936 133775960 -63419472 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1605 2952 132 56 6 chr1 133776443 133776946 -63418486 + RLTR11A LTR ERVK 1 528 0 5 1605 239 173 19 0 chr1 133777329 133777381 -63418051 + CT-rich Low_complexity Low_complexity 2 54 0 5 1605 1156 43 0 0 chr1 133777381 133777520 -63417912 - B1_Mm SINE Alu 0 147 9 5 1605 372 368 61 15 chr1 133777623 133777819 -63417613 + L1MDa LINE L1 1262 1466 -5167 5 1605 481 273 133 71 chr1 133777880 133778328 -63417104 + Lx8 LINE L1 2308 2789 -3790 5 1605 1647 157 119 16 chr1 133778328 133778698 -63416734 + RMER17C LTR ERVK 3 410 0 5 1605 435 246 119 35 chr1 133778698 133779095 -63416337 + Lx8 LINE L1 6476 6700 -1475 5 1605 815 200 32 26 chr1 133779250 133779440 -63415992 - B3 SINE B2 -10 206 16 5 1605 814 247 45 5 chr1 133779443 133779642 -63415790 + B3 SINE B2 1 207 -9 5 1605 690 197 148 15 chr1 133779753 133779949 -63415483 + RLTR40 LTR ERVK 580 801 -16 5 1605 593 222 8 0 chr1 133780124 133780241 -63415191 - PB1D9 SINE Alu -1 119 2 5 1605 477 90 0 0 chr1 133780268 133780335 -63415097 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 5 1605 3936 230 27 36 chr1 133780336 133781229 -63414203 + Lx8 LINE L1 6965 7849 -326 5 1605 663 24 0 0 chr1 133781497 133781581 -63413851 + L1Md_T LINE L1 6499 6582 0 5 1605 499 303 0 0 chr1 133781808 133781940 -63413492 - B1F1 SINE Alu -3 146 15 5 1605 503 169 0 33 chr1 133782022 133782114 -63413318 - B1_Mur1 SINE Alu -21 128 40 5 1605 657 155 0 33 chr1 133782118 133782238 -63413194 + (TCTCTG)n Simple_repeat Simple_repeat 5 120 0 5 1605 302 193 17 34 chr1 133782238 133782297 -63413135 - PB1D9 SINE Alu -61 59 2 5 1605 262 310 69 10 chr1 133782415 133782516 -63412916 + PB1D10 SINE Alu 1 107 -10 5 1605 237 132 0 0 chr1 133782525 133782563 -63412869 + (CACCAT)n Simple_repeat Simple_repeat 6 43 0 5 1605 1033 271 60 9 chr1 133782763 133783098 -63412334 - MLT2D LTR ERVL -59 355 4 5 1605 288 0 0 0 chr1 133783510 133783542 -63411890 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1605 307 152 152 0 chr1 133783966 133784032 -63411400 - ID2 SINE ID -3 80 5 5 1605 214 241 114 0 chr1 133784032 133784111 -63411321 + (ACTAG)n Simple_repeat Simple_repeat 3 90 0 5 1605 310 310 91 52 chr1 133784500 133784761 -63410671 + RSINE1 SINE B4 37 274 -18 5 1605 1230 131 0 0 chr1 133784978 133784996 -63410436 - B2_Mm2 SINE B2 -19 176 159 5 1605 312 27 0 0 chr1 133784996 133785033 -63410399 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 1605 1230 131 0 0 chr1 133785033 133785190 -63410242 - B2_Mm2 SINE B2 -37 158 2 5 1605 501 231 93 36 chr1 133785234 133785373 -63410059 - RSINE1 SINE B4 -6 159 13 5 1605 551 219 154 0 chr1 133785373 133785496 -63409936 - B1F1 SINE Alu -6 143 2 5 1605 873 68 83 0 chr1 133785615 133785748 -63409684 + B2_Mm2 SINE B2 1 144 -51 5 1605 396 0 0 0 chr1 133785748 133785792 -63409640 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1605 754 233 105 5 chr1 133785836 133786026 -63409406 - ID_B1 SINE B4 -10 214 6 5 1605 226 346 25 0 chr1 133786088 133786169 -63409263 + ID4 SINE ID 1 83 0 5 1605 252 0 0 0 chr1 133786286 133786314 -63409118 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1605 261 0 0 0 chr1 133786450 133786479 -63408953 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1605 1147 58 0 0 chr1 133786479 133786616 -63408816 - B1_Mus1 SINE Alu -10 138 2 5 1605 459 352 60 68 chr1 133786816 133787081 -63408351 - B4 SINE B4 -27 265 3 5 1605 512 221 55 0 chr1 133787081 133787206 -63408226 - MLT1A0 LTR MaLR -218 147 16 5 1605 326 285 6 100 chr1 133787277 133787304 -63408128 + ID_B1 SINE B4 80 101 -123 5 1605 2228 140 50 13 chr1 133787304 133787688 -63407744 - RMER10B LTR ERVL 0 398 1 5 1605 326 285 6 100 chr1 133787688 133787820 -63407612 + ID_B1 SINE B4 102 224 0 5 1605 229 159 22 22 chr1 133787827 133787872 -63407560 + B1F SINE Alu 10 54 -95 5 1605 1433 179 43 96 chr1 133787872 133788248 -63407184 - RLTR41 LTR ERV1 0 446 91 5 1605 369 277 16 48 chr1 133788265 133788390 -63407042 + B1F SINE Alu 29 149 0 5 1605 627 120 26 0 chr1 133788744 133788861 -63406571 + (CATATA)n Simple_repeat Simple_repeat 6 125 0 5 1605 314 316 79 37 chr1 133788883 133789097 -63406335 - MLT1D LTR MaLR -170 335 113 5 1605 363 313 52 7 chr1 133789319 133789454 -63405978 - B1F SINE Alu -8 141 1 5 1605 516 32 0 0 chr1 133789739 133789801 -63405631 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1605 3124 18 0 0 chr1 133789833 133790175 -63405257 - ORR1A0 LTR MaLR -4 342 1 5 1605 248 258 0 43 chr1 133790383 133790452 -63404980 + MLT1A1 LTR MaLR 64 129 -279 5 1605 366 23 0 0 chr1 133790457 133790500 -63404932 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1605 227 179 0 0 chr1 133790661 133790700 -63404732 + L1MA9 LINE L1 5388 5426 -742 5 1605 905 213 65 10 chr1 133790700 133790899 -63404533 + B3 SINE B2 1 210 -6 5 1605 805 182 0 28 chr1 133790913 133791054 -63404378 - B1_Mm SINE Alu -10 137 1 5 1605 1798 267 88 63 chr1 133791079 133791277 -63404155 + L1MA9 LINE L1 5413 5606 -706 5 1605 549 275 18 48 chr1 133791277 133791445 -63403987 + RSINE1 SINE B4 3 165 0 5 1605 1798 267 88 63 chr1 133791445 133792120 -63403312 + L1MA9 LINE L1 5607 6308 -4 5 1605 992 98 0 0 chr1 133792163 133792306 -63403126 + B2_Mm2 SINE B2 2 144 -51 5 1605 227 54 27 0 chr1 133792306 133792343 -63403089 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1605 5946 77 33 16 chr1 133792345 133793590 -63401842 + L1VL2 LINE L1 124 1392 -2223 5 1605 12564 118 7 8 chr1 133793581 133794362 -63401070 + L1_Mus4 LINE L1 3969 4746 -1137 5 1605 1601 32 0 16 chr1 133794362 133794550 -63400882 + B2_Mm1a SINE B2 2 186 -7 5 1605 12564 98 17 4 chr1 133794550 133796406 -63399026 + L1_Mus4 LINE L1 4747 6629 -7 5 1605 288 0 0 0 chr1 133796442 133796474 -63398958 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1605 192 77 0 0 chr1 133796776 133796802 -63398630 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1605 28 0 0 0 chr1 133797018 133797046 -63398386 + AT_rich Low_complexity Low_complexity 1 28 0 5 1605 885 102 15 0 chr1 133797067 133797204 -63398228 + B1_Mur4 SINE Alu 6 144 -6 5 1605 211 130 0 36 chr1 133797215 133797271 -63398161 + A-rich Low_complexity Low_complexity 4 57 0 5 1605 1153 101 31 36 chr1 133797408 133797518 -63397914 + B2_Mm2 SINE B2 1 106 -89 5 1605 2019 133 34 167 chr1 133797518 133798014 -63397418 - RLTR23 LTR ERV1 0 430 1 5 1605 1153 101 31 36 chr1 133798014 133798099 -63397333 + B2_Mm2 SINE B2 107 195 0 5 1605 21 0 0 0 chr1 133798101 133798122 -63397310 + AT_rich Low_complexity Low_complexity 1 21 0 5 1605 393 114 0 19 chr1 133798170 133798239 -63397193 - B2_Mm2 SINE B2 -107 109 47 5 1605 1102 111 23 0 chr1 133798250 133798421 -63397011 - B2_Mm2 SINE B2 -12 183 9 5 1605 1309 27 0 0 chr1 133798458 133798606 -63396826 - B1_Mus1 SINE Alu 0 148 1 5 1605 1744 284 135 55 chr1 133798608 133799018 -63396414 - Lx8 LINE L1 -696 7000 6566 5 1605 1521 48 11 0 chr1 133799018 133799205 -63396227 - B2_Mm1t SINE B2 -4 189 1 5 1605 1744 239 165 61 chr1 133799205 133799616 -63395816 - Lx8 LINE L1 -898 6575 6100 5 1605 2298 267 91 147 chr1 133799807 133800192 -63395240 - Lx8 LINE L1 -12 5868 5458 5 1605 754 247 21 21 chr1 133800192 133800382 -63395050 - B3A SINE B2 -8 190 1 5 1605 2298 267 91 147 chr1 133800382 133800572 -63394860 - Lx8 LINE L1 -423 5457 5269 5 1605 404 158 305 0 chr1 133800572 133800667 -63394765 - B1_Mus2 SINE Alu -12 135 12 5 1605 2298 267 91 147 chr1 133800667 133801515 -63393917 - Lx8 LINE L1 -423 5268 4420 5 1605 898 150 0 45 chr1 133801515 133801645 -63393787 + B1_Mur4 SINE Alu 3 125 -25 5 1605 266 0 29 0 chr1 133801645 133801679 -63393753 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1605 898 150 0 45 chr1 133801679 133801702 -63393730 + B1_Mur4 SINE Alu 126 148 -2 5 1605 2298 267 91 147 chr1 133801702 133801724 -63393708 - Lx8 LINE L1 -1461 4419 4411 5 1605 1867 195 111 0 chr1 133801724 133802103 -63393329 + MTC LTR MaLR 1 421 0 5 1605 2298 267 91 147 chr1 133802103 133802147 -63393285 - Lx8 LINE L1 -1470 4410 4371 5 1605 562 196 247 56 chr1 133802177 133802355 -63393077 - B3 SINE B2 -4 212 1 5 1605 571 248 87 50 chr1 133802721 133802788 -63392644 + ID SINE ID 2 74 -150 5 1605 301 252 8 139 chr1 133802788 133802886 -63392546 + PB1D10 SINE Alu 1 87 -30 5 1605 658 281 60 25 chr1 133802886 133803054 -63392378 + B3 SINE B2 1 165 -51 5 1605 306 0 0 0 chr1 133803054 133803088 -63392344 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1605 658 281 60 25 chr1 133803088 133803120 -63392312 + B3 SINE B2 166 207 -9 5 1605 301 252 8 139 chr1 133803120 133803150 -63392282 + PB1D10 SINE Alu 88 112 -5 5 1605 1142 107 6 0 chr1 133803183 133803360 -63392072 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1605 1042 101 159 12 chr1 133803382 133803552 -63391880 + B2_Mm2 SINE B2 1 195 0 5 1605 1150 82 0 0 chr1 133803875 133804022 -63391410 + B1_Mus2 SINE Alu 1 147 0 5 1605 1318 82 37 26 chr1 133804094 133804283 -63391149 + B2_Mm2 SINE B2 1 191 -4 5 1605 439 214 82 0 chr1 133804908 133805006 -63390426 + L1MB3 LINE L1 6050 6155 -28 5 1605 703 202 0 15 chr1 133805009 133805140 -63390292 - B1_Mur4 SINE Alu -21 129 1 5 1605 645 289 80 0 chr1 133805338 133805539 -63389893 - ID_B1 SINE B4 -2 222 6 5 1605 1508 58 16 5 chr1 133806013 133806203 -63389229 - B2_Mm2 SINE B2 -3 192 1 5 1605 181 330 157 0 chr1 133806326 133806441 -63388991 - MIR SINE MIR -118 144 12 5 1605 23 54 0 0 chr1 133807210 133807247 -63388185 + GC_rich Low_complexity Low_complexity 1 37 0 5 1605 21 0 0 0 chr1 133807716 133807737 -63387695 + GC_rich Low_complexity Low_complexity 1 21 0 5 1605 1092 58 29 0 chr1 133808638 133808777 -63386655 - B1_Mus1 SINE Alu -5 143 1 5 1605 283 215 218 24 chr1 133808845 133808969 -63386463 - B1_Mus1 SINE Alu 0 148 1 5 1605 1139 89 0 0 chr1 133809162 133809308 -63386124 + B1_Mus2 SINE Alu 2 147 0 5 1605 186 133 0 0 chr1 133809311 133809341 -63386091 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1605 657 121 54 39 chr1 133809400 133809529 -63385903 - B1_Mur4 SINE Alu 0 150 20 5 1605 219 175 0 0 chr1 133809567 133809624 -63385808 + T-rich Low_complexity Low_complexity 1 57 0 5 1605 1670 31 0 0 chr1 133809639 133809831 -63385601 - B2_Mm1a SINE B2 0 193 2 5 1605 374 237 134 21 chr1 133809980 133810122 -63385310 - RSINE1 SINE B4 -4 161 4 5 1605 21 0 0 0 chr1 133810311 133810332 -63385100 + AT_rich Low_complexity Low_complexity 1 21 0 5 1605 1703 31 0 0 chr1 133810415 133810607 -63384825 + B2_Mm1a SINE B2 2 193 0 6 1605 353 159 204 20 chr1 133810620 133810720 -63384712 + PB1D9 SINE Alu 3 119 -1 6 1605 1382 90 5 16 chr1 133810924 133811116 -63384316 - B2_Mm2 SINE B2 -5 190 1 6 1605 304 320 50 10 chr1 133811163 133811264 -63384168 + PB1D10 SINE Alu 9 113 -4 6 1605 1053 72 58 0 chr1 133811346 133811485 -63383947 - B1_Mm SINE Alu 0 147 1 6 1605 1128 138 50 0 chr1 133811485 133811665 -63383767 - B2_Mm2 SINE B2 -3 192 3 6 1605 1115 82 0 0 chr1 133811693 133811839 -63383593 - B1_Mus2 SINE Alu 0 147 2 6 1605 404 355 64 27 chr1 133811935 133812123 -63383309 - ID_B1 SINE B4 -1 223 29 6 1605 317 254 14 0 chr1 133812216 133812287 -63383145 + ID4 SINE ID 10 81 -2 6 1605 428 248 96 44 chr1 133813515 133813650 -63381782 + B3 SINE B2 1 142 -74 6 1605 449 174 180 20 chr1 133813835 133813935 -63381497 + PB1D9 SINE Alu 2 117 -3 6 1605 198 337 33 0 chr1 133814100 133814192 -63381240 - MIR3 SINE MIR -51 157 63 6 1605 233 268 113 0 chr1 133814306 133814403 -63381029 - PB1D10 SINE Alu -9 108 1 6 1605 312 209 220 0 chr1 133814729 133814820 -63380612 + PB1D10 SINE Alu 5 115 -2 6 1605 312 272 130 9 chr1 133814832 133814947 -63380485 + B3 SINE B2 80 208 -8 6 1605 368 211 56 0 chr1 133815141 133815231 -63380201 + PB1D9 SINE Alu 1 95 -25 6 1605 220 281 53 0 chr1 133815425 133815482 -63379950 - PB1D9 SINE Alu -59 61 2 6 1605 277 200 233 0 chr1 133815769 133815859 -63379573 - PB1D10 SINE Alu -5 112 2 6 1605 232 213 0 0 chr1 133815995 133816042 -63379390 - B3 SINE B2 -145 71 25 6 1605 867 114 22 30 chr1 133816196 133816331 -63379101 - B1_Mur3 SINE Alu -14 135 2 6 1605 1454 56 6 0 chr1 133816505 133816683 -63378749 + B2_Mm1a SINE B2 1 179 -14 6 1605 528 289 42 0 chr1 133816711 133816853 -63378579 + RSINE1 SINE B4 14 161 -4 6 1605 264 59 0 0 chr1 133816900 133816934 -63378498 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1605 438 192 49 29 chr1 133817426 133817528 -63377904 + PB1D9 SINE Alu 1 104 -16 6 1605 225 274 110 42 chr1 133817808 133817926 -63377506 - RSINE1 SINE B4 -31 134 9 6 1605 22 0 0 0 chr1 133817932 133817954 -63377478 + AT_rich Low_complexity Low_complexity 1 22 0 6 1605 180 135 0 0 chr1 133818014 133818051 -63377381 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1605 1284 27 0 0 chr1 133818051 133818197 -63377235 - B1_Mus2 SINE Alu 0 147 2 6 1605 632 220 88 47 chr1 133818207 133818393 -63377039 - B3 SINE B2 -8 187 6 6 1605 207 0 0 0 chr1 133818986 133819009 -63376423 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1605 922 26 0 0 chr1 133819009 133819124 -63376308 - B1_Mus2 SINE Alu -8 139 25 6 1605 1321 81 5 46 chr1 133819126 133819320 -63376112 - B2_Mm1a SINE B2 -6 187 2 6 1605 448 239 98 41 chr1 133819714 133819836 -63375596 + B3 SINE B2 88 216 0 6 1605 463 62 0 0 chr1 133819840 133819905 -63375527 + B1_Mm SINE Alu 83 147 0 6 1605 1523 48 16 0 chr1 133819972 133820158 -63375274 - B2_Mm2 SINE B2 -5 190 2 6 1605 755 120 8 0 chr1 133820257 133820374 -63375058 - B1_Mur4 SINE Alu 0 150 33 6 1605 310 291 39 84 chr1 133820837 133820865 -63374567 - B1F1 SINE Alu 0 149 122 6 1605 406 304 0 18 chr1 133820865 133820979 -63374453 - PB1D9 SINE Alu -6 114 3 6 1605 310 291 39 84 chr1 133820979 133821104 -63374328 - B1F1 SINE Alu -28 121 4 6 1605 939 237 57 36 chr1 133821257 133821590 -63373842 - RLTR15 LTR ERVK -19 340 1 6 1605 507 17 0 0 chr1 133821661 133821721 -63373711 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1605 384 193 145 0 chr1 133821722 133821805 -63373627 - B1_Mm SINE Alu -34 113 19 6 1605 913 63 0 0 chr1 133821856 133821982 -63373450 + B1_Mus2 SINE Alu 22 147 0 6 1605 30 0 0 0 chr1 133822002 133822032 -63373400 + AT_rich Low_complexity Low_complexity 1 30 0 6 1605 408 280 25 0 chr1 133822145 133822263 -63373169 + B3A SINE B2 30 150 -48 6 1605 510 271 215 53 chr1 133822779 133822937 -63372495 + Lx8 LINE L1 7144 7335 -138 6 1605 264 59 0 0 chr1 133822937 133822971 -63372461 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1605 510 271 215 53 chr1 133822971 133823096 -63372336 + Lx8 LINE L1 7336 7472 -1 6 1605 770 286 35 0 chr1 133823117 133823316 -63372116 - B3 SINE B2 -10 206 1 6 1605 562 196 53 9 chr1 133823456 133823569 -63371863 + PB1D9 SINE Alu 3 120 0 6 1605 1091 55 7 20 chr1 133824118 133824266 -63371166 - B1_Mus2 SINE Alu 0 147 2 6 1605 1422 89 16 0 chr1 133824276 133824467 -63370965 - B2_Mm2 SINE B2 -1 194 1 6 1606 265 289 169 0 chr1 133824905 133824988 -63370444 - ID_B1 SINE B4 -125 99 3 6 1606 321 89 0 0 chr1 133825114 133825159 -63370273 + (GGGGA)n Simple_repeat Simple_repeat 1 45 0 6 1606 456 19 0 0 chr1 133825517 133825570 -63369862 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1606 243 305 48 24 chr1 133825807 133825891 -63369541 - B1F SINE Alu -34 115 30 6 1606 433 228 231 14 chr1 133826480 133826627 -63368805 + B3A SINE B2 2 180 -18 6 1606 1300 74 20 31 chr1 133826665 133826860 -63368572 + B2_Mm1t SINE B2 1 193 0 6 1606 368 305 93 0 chr1 133826876 133826994 -63368438 + B3 SINE B2 2 130 -86 6 1606 195 45 43 43 chr1 133827946 133827992 -63367440 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 6 1606 1148 81 0 0 chr1 133828013 133828161 -63367271 - B1_Mus1 SINE Alu 0 148 1 6 1606 186 43 0 0 chr1 133829524 133829547 -63365885 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1606 181 53 25 50 chr1 133831443 133831483 -63363949 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1606 180 0 0 0 chr1 133833059 133833079 -63362353 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1606 21 0 0 0 chr1 133833079 133833100 -63362332 + AT_rich Low_complexity Low_complexity 1 21 0 6 1606 933 109 43 0 chr1 133833118 133833256 -63362176 - B1_Mus1 SINE Alu -4 144 1 6 1606 1249 66 55 0 chr1 133833256 133833438 -63361994 - B2_Mm1a SINE B2 0 193 1 6 1606 702 179 14 41 chr1 133833904 133834050 -63361382 - B1_Mur2 SINE Alu -2 147 6 6 1606 309 214 25 127 chr1 133833947 133834065 -63361367 - MT2B LTR ERVL -344 257 152 6 1606 619 122 182 24 chr1 133834094 133834220 -63361212 - B1_Mus2 SINE Alu 0 147 2 6 1606 483 178 64 18 chr1 133834299 133834408 -63361024 - B3 SINE B2 -5 211 98 6 1606 629 243 15 0 chr1 133834883 133835019 -63360413 + B1_Mur2 SINE Alu 6 143 -6 6 1606 180 0 0 0 chr1 133835132 133835152 -63360280 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1606 609 238 25 70 chr1 133835943 133836101 -63359331 + B3A SINE B2 2 152 -46 6 1606 288 0 0 0 chr1 133836112 133836144 -63359288 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1606 294 95 0 0 chr1 133836144 133836185 -63359247 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1606 1129 75 0 0 chr1 133836392 133836539 -63358893 + B1_Mus2 SINE Alu 1 147 0 6 1606 216 86 0 0 chr1 133836542 133836577 -63358855 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1606 1202 34 0 0 chr1 133836695 133836842 -63358590 + B1_Mus1 SINE Alu 2 148 0 6 1606 577 212 118 22 chr1 133837052 133837187 -63358245 - B1_Mur1 SINE Alu 0 149 2 6 1606 230 238 31 31 chr1 133838301 133838366 -63357066 + RLTR22_Mur LTR ERVK 1600 1664 -184 6 1606 1178 61 0 0 chr1 133838597 133838744 -63356688 - B1_Mus1 SINE Alu 0 148 2 6 1606 238 256 0 79 chr1 133839020 133839109 -63356323 + ID4 SINE ID 2 83 0 6 1606 234 81 0 0 chr1 133839754 133839791 -63355641 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1606 247 221 204 31 chr1 133839870 133839968 -63355464 - PB1D10 SINE Alu 0 117 3 6 1606 410 277 115 0 chr1 133840107 133840255 -63355177 + MER5A DNA MER1_type 1 165 -24 6 1606 393 22 0 0 chr1 133840473 133840519 -63354913 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1606 488 282 8 22 chr1 133840524 133840658 -63354774 - RSINE1 SINE B4 -30 135 4 6 1606 455 223 55 47 chr1 133840811 133840938 -63354494 + B1F SINE Alu 5 132 -17 6 1606 428 293 67 20 chr1 133841106 133841256 -63354176 + RSINE1 SINE B4 5 161 -4 6 1606 304 330 0 11 chr1 133841277 133841366 -63354066 + B4A SINE B4 1 88 -204 6 1606 749 118 14 56 chr1 133841514 133841657 -63353775 + B1_Mur3 SINE Alu 13 149 0 6 1606 198 0 0 0 chr1 133842543 133842565 -63352867 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 6 1606 226 175 0 0 chr1 133843053 133843093 -63352339 - PB1D10 SINE Alu -49 68 29 6 1606 389 282 124 21 chr1 133843206 133843351 -63352081 - MER20 DNA MER1_type -56 163 4 6 1606 1089 52 0 0 chr1 133843690 133843825 -63351607 - B1_Mm SINE Alu -11 136 2 6 1606 432 0 0 0 chr1 133845275 133845323 -63350109 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1606 548 305 8 0 chr1 133845430 133845561 -63349871 + ID_B1 SINE B4 1 132 -92 6 1606 446 274 58 22 chr1 133845561 133845711 -63349721 + B3 SINE B2 36 188 -5 6 1606 305 271 154 28 chr1 133845717 133845899 -63349533 - L1MD1 LINE L1 -337 5905 5701 6 1606 1189 102 48 0 chr1 133846094 133846280 -63349152 + B2_Mm2 SINE B2 1 195 0 6 1606 306 291 75 0 chr1 133846491 133846625 -63348807 + MIRb SINE MIR 68 211 -57 6 1606 1665 178 41 35 chr1 133846895 133846960 -63348472 - ORR1C1 LTR MaLR -6 372 308 7 1606 1043 137 49 0 chr1 133846960 133847143 -63348289 + B2_Mm1a SINE B2 1 192 -1 7 1606 1665 178 41 35 chr1 133847143 133847443 -63347989 - ORR1C1 LTR MaLR -71 307 5 7 1606 216 0 0 0 chr1 133847475 133847499 -63347933 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1606 1194 48 0 0 chr1 133847499 133847646 -63347786 - B1_Mm SINE Alu 0 147 1 7 1606 1079 58 0 0 chr1 133847733 133847870 -63347562 + B1_Mus1 SINE Alu 1 137 -11 7 1606 324 0 0 0 chr1 133847870 133847906 -63347526 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 7 1606 844 200 101 15 chr1 133848826 133849024 -63346408 - B3 SINE B2 0 216 2 7 1606 300 301 154 0 chr1 133849180 133849323 -63346109 + MER58B DNA MER1_type 147 311 -30 7 1606 726 201 0 7 chr1 133849428 133849563 -63345869 + B1_Mus2 SINE Alu 14 147 0 7 1606 887 152 0 6 chr1 133849569 133849734 -63345698 + GA-rich Low_complexity Low_complexity 3 166 0 7 1606 210 143 0 0 chr1 133850486 133850535 -63344897 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1606 191 342 75 12 chr1 133850684 133850764 -63344668 + MIRc SINE MIR 153 237 -31 7 1606 273 118 0 0 chr1 133853847 133853898 -63341534 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1606 1159 55 7 0 chr1 133854861 133855007 -63340425 + B1_Mus1 SINE Alu 2 148 0 7 1606 405 333 104 0 chr1 133855054 133855198 -63340234 + RSINE1 SINE B4 3 161 -4 7 1606 252 0 0 0 chr1 133855199 133855227 -63340205 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1606 254 274 16 0 chr1 133855287 133855349 -63340083 + PB1D10 SINE Alu 55 117 0 7 1606 561 243 28 69 chr1 133855404 133855621 -63339811 + B4A SINE B4 82 289 -3 7 1606 751 228 0 0 chr1 133855672 133855821 -63339611 - B1_Mur3 SINE Alu 0 149 1 7 1606 180 0 0 0 chr1 133855875 133855895 -63339537 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1606 413 269 9 9 chr1 133856366 133856471 -63338961 - PB1D10 SINE Alu -2 115 11 7 1606 348 333 32 21 chr1 133856478 133856665 -63338767 - L1ME4a LINE L1 -297 5827 5639 7 1606 1092 49 7 0 chr1 133858211 133858354 -63337078 + B1_Mus1 SINE Alu 5 148 0 7 1606 517 299 61 53 chr1 133858451 133858698 -63336734 - MER2 DNA MER2_type -6 339 91 7 1606 224 224 15 15 chr1 133859423 133859491 -63335941 + (CCCCG)n Simple_repeat Simple_repeat 2 69 0 7 1606 703 177 41 28 chr1 133861662 133861807 -63333625 + B1F SINE Alu 1 147 -2 7 1606 342 79 0 45 chr1 133861969 133862035 -63333397 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 7 1606 279 155 393 0 chr1 133862037 133862121 -63333311 - PB1D10 SINE Alu 0 117 1 7 1606 311 218 0 0 chr1 133862067 133862122 -63333310 - B4 SINE B4 -153 139 85 7 1606 274 326 81 7 chr1 133862262 133862410 -63333022 + MIRb SINE MIR 102 260 -8 7 1606 221 223 22 18 chr1 133864233 133864300 -63331132 + L2c LINE L2 3081 3152 -235 7 1606 1333 99 16 0 chr1 133864595 133864786 -63330646 - B2_Mm2 SINE B2 0 195 2 7 1606 597 186 92 40 chr1 133864904 133865045 -63330387 - B1_Mur1 SINE Alu -7 142 1 7 1606 207 0 0 0 chr1 133865045 133865068 -63330364 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1606 434 276 9 9 chr1 133865071 133865177 -63330255 - PB1D10 SINE Alu -6 111 6 7 1606 327 271 105 30 chr1 133865985 133866118 -63329314 - MIR3 SINE MIR -36 172 30 7 1606 755 178 14 0 chr1 133866283 133866429 -63329003 + B1_Mur4 SINE Alu 3 150 0 7 1606 216 366 36 36 chr1 133866757 133866896 -63328536 - B4A SINE B4 -141 151 13 7 1606 289 301 0 14 chr1 133866825 133866899 -63328533 - ID4_ SINE ID -1 82 10 7 1606 204 67 0 0 chr1 133870127 133870157 -63325275 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1606 653 73 0 30 chr1 133871100 133871199 -63324233 - B2_Mm2 SINE B2 -99 96 1 7 1606 387 0 0 0 chr1 133871625 133871668 -63323764 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1606 392 216 74 37 chr1 133871727 133871842 -63323590 - B1F1 SINE Alu -32 117 5 7 1606 315 0 0 0 chr1 133872124 133872159 -63323273 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1606 564 232 208 16 chr1 133872439 133872684 -63322748 - B4A SINE B4 0 292 1 7 1606 500 298 96 54 chr1 133872754 133873034 -63322398 - B4A SINE B4 0 292 1 7 1606 1581 42 0 0 chr1 133876504 133876695 -63318737 - B2_Mm1t SINE B2 -1 192 2 7 1606 243 0 0 0 chr1 133877470 133877497 -63317935 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1606 29 0 0 0 chr1 133878865 133878894 -63316538 + AT_rich Low_complexity Low_complexity 1 29 0 7 1606 643 229 103 32 chr1 133879986 133880171 -63315261 + B3A SINE B2 1 198 0 7 1606 535 234 109 0 chr1 133880351 133880479 -63314953 + B3A SINE B2 3 144 -54 7 1606 336 64 0 0 chr1 133880479 133880526 -63314906 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1606 2381 107 11 39 chr1 133880655 133881036 -63314396 + ORR1C1 LTR MaLR 1 370 -8 7 1606 404 200 12 0 chr1 133881239 133881319 -63314113 - ID4 SINE ID 0 83 3 7 1606 264 122 0 0 chr1 133881546 133881587 -63313845 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 7 1606 1540 32 21 0 chr1 133881599 133881788 -63313644 - B2_Mm1t SINE B2 0 193 1 7 1606 1184 126 21 0 chr1 133881798 133881988 -63313444 - B2_Mm2 SINE B2 -1 194 1 7 1606 504 212 106 0 chr1 133882081 133882194 -63313238 - B1_Mus1 SINE Alu -22 126 2 7 1606 1380 69 21 0 chr1 133882215 133882403 -63313029 - B2_Mm1t SINE B2 0 193 2 7 1606 573 238 78 62 chr1 133882429 133882622 -63312810 + B3A SINE B2 2 197 -1 7 1606 229 323 202 16 chr1 133882635 133882648 -63312784 + B4A SINE B4 77 224 -63 7 1606 516 225 27 0 chr1 133882648 133882759 -63312673 + PB1D9 SINE Alu 6 119 -1 7 1606 475 159 21 80 chr1 133882758 133882877 -63312555 + B1_Mus2 SINE Alu 1 146 -1 7 1606 336 288 66 25 chr1 133882911 133883015 -63312417 - L1MEg LINE L1 -4083 2001 1893 7 1606 1140 68 0 0 chr1 133883015 133883162 -63312270 - B1_Mus1 SINE Alu 0 148 2 7 1606 336 288 66 25 chr1 133883162 133883178 -63312254 - L1MEg LINE L1 -4192 1892 1877 7 1606 189 0 0 0 chr1 133883183 133883204 -63312228 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1606 189 0 0 0 chr1 133883392 133883413 -63312019 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1606 577 157 157 0 chr1 133883413 133883534 -63311898 - B1_Mur4 SINE Alu -10 140 1 7 1606 888 255 5 24 chr1 133883539 133883752 -63311680 - B4A SINE B4 -82 210 2 7 1606 22 0 0 0 chr1 133883757 133883779 -63311653 + AT_rich Low_complexity Low_complexity 1 22 0 7 1606 262 276 0 0 chr1 133884055 133884113 -63311319 - RSINE1 SINE B4 -105 60 3 7 1606 335 280 144 56 chr1 133884114 133884239 -63311193 - ID_B1 SINE B4 -69 155 20 7 1606 209 184 26 0 chr1 133884505 133884543 -63310889 + CT-rich Low_complexity Low_complexity 2 40 0 7 1606 271 174 17 0 chr1 133885229 133885297 -63310135 - B1F SINE Alu 0 149 49 7 1606 42 20 0 0 chr1 133885297 133885346 -63310086 + AT_rich Low_complexity Low_complexity 1 49 0 7 1606 1029 76 4 16 chr1 133885508 133885682 -63309750 - B2_Mm2 SINE B2 -18 175 2 7 1606 265 284 12 12 chr1 133885675 133885687 -63309745 - PB1D10 SINE Alu -35 82 37 7 1606 283 254 16 0 chr1 133885687 133885750 -63309682 - ID_B1 SINE B4 -72 152 89 7 1606 329 256 39 0 chr1 133885789 133885867 -63309565 - ID4_ SINE ID -1 82 2 7 1606 735 12 0 0 chr1 133886018 133886102 -63309330 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1606 273 278 15 0 chr1 133887349 133887361 -63308071 + B1F2 SINE Alu 1 43 -74 7 1606 272 270 0 0 chr1 133887361 133887424 -63308008 + ID_B1 SINE B4 95 157 -67 7 1606 909 102 7 7 chr1 133887701 133887839 -63307593 + B1_Mus1 SINE Alu 11 148 0 7 1606 1408 145 146 136 chr1 133887851 133888174 -63307258 + ORR1B1 LTR MaLR 1 339 -55 7 1606 1107 75 0 0 chr1 133888174 133888321 -63307111 + B1_Mus2 SINE Alu 1 147 0 7 1606 1512 145 146 136 chr1 133888321 133888387 -63307045 + ORR1B1 LTR MaLR 340 394 0 7 1606 228 206 29 100 chr1 133888478 133888505 -63306927 + PB1 SINE Alu 48 76 -51 7 1606 1057 228 5 5 chr1 133888505 133888717 -63306715 + B3 SINE B2 2 213 -3 7 1606 228 206 29 100 chr1 133888717 133888759 -63306673 + PB1 SINE Alu 77 111 -16 7 1606 1496 62 0 25 chr1 133888833 133889031 -63306401 - B2_Mm2 SINE B2 0 195 3 7 1606 737 238 61 37 chr1 133889574 133889788 -63305644 - Tigger7 DNA MER2_type -11 2480 2262 7 1606 485 323 95 0 chr1 133889845 133890003 -63305429 - Tigger7 DNA MER2_type -2318 173 1 7 1606 524 292 187 8 chr1 133890351 133890586 -63304846 + B4 SINE B4 2 278 -14 7 1606 869 259 96 39 chr1 133890688 133891058 -63304374 + MLT2B4 LTR ERVL 1 401 -63 7 1606 589 244 91 129 chr1 133891115 133891176 -63304256 - B4A SINE B4 -16 276 222 7 1606 1631 43 0 0 chr1 133891176 133891364 -63304068 - B2_Mm1t SINE B2 -5 188 1 7 1606 589 244 91 129 chr1 133891364 133891589 -63303843 - B4A SINE B4 -71 221 1 7 1606 801 177 23 0 chr1 133891623 133891753 -63303679 - B1_Mus1 SINE Alu -15 133 1 7 1606 620 224 77 20 chr1 133891762 133891935 -63303497 - B3 SINE B2 -4 212 17 7 1606 209 33 0 32 chr1 133891935 133891966 -63303466 + (CACCC)n Simple_repeat Simple_repeat 5 34 0 7 1606 262 296 34 17 chr1 133892014 133892131 -63303301 - PB1D9 SINE Alu 0 120 2 7 1606 408 20 0 0 chr1 133892148 133892197 -63303235 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1606 698 247 6 29 chr1 133892416 133892587 -63302845 + B3A SINE B2 2 168 -30 7 1606 740 217 1 19 chr1 133893117 133893292 -63302140 + B3 SINE B2 1 163 -32 7 1606 554 156 55 9 chr1 133893423 133893533 -63301899 + B1_Mur1 SINE Alu 34 148 -1 8 1606 1395 74 0 6 chr1 133893538 133893715 -63301717 + B2_Mm2 SINE B2 1 176 -19 8 1606 261 325 34 11 chr1 133893733 133893829 -63301603 + PB1D10 SINE Alu 1 107 -20 8 1606 258 257 83 28 chr1 133893847 133893919 -63301513 + ID4 SINE ID 8 83 0 8 1606 794 151 0 23 chr1 133894040 133894169 -63301263 + B1_Mus1 SINE Alu 2 127 -21 8 1606 2420 62 49 0 chr1 133894201 133894507 -63300925 - ORR1A2 LTR MaLR -4 323 3 8 1606 213 247 53 96 chr1 133894564 133894658 -63300774 - RSINE1 SINE B4 -2 163 74 8 1606 1457 205 105 6 chr1 133894665 133894979 -63300453 + ORR1D2 LTR MaLR 1 345 -25 8 1606 288 0 0 0 chr1 133895159 133895191 -63300241 + (TTC)n Simple_repeat Simple_repeat 2 33 0 8 1606 1034 80 0 0 chr1 133895199 133895336 -63300096 - B1_Mm SINE Alu 0 147 11 8 1606 623 194 0 77 chr1 133895336 133895347 -63300085 - ID_B1 SINE B4 0 173 81 8 1606 1190 35 0 20 chr1 133895366 133895514 -63299918 - B1_Mus2 SINE Alu 0 147 3 8 1606 2257 109 7 120 chr1 133896007 133896207 -63299225 + ORR1C1 LTR MaLR 1 172 -206 8 1606 1586 27 0 41 chr1 133896207 133896403 -63299029 + B2_Mm1t SINE B2 2 189 -4 8 1606 2257 109 7 120 chr1 133896403 133896628 -63298804 + ORR1C1 LTR MaLR 173 378 0 8 1606 992 143 64 32 chr1 133897187 133897375 -63298057 - B2_Mm2 SINE B2 0 195 2 8 1606 817 203 40 60 chr1 133897406 133897605 -63297827 - B3A SINE B2 0 198 4 8 1606 1053 195 19 24 chr1 133897670 133897875 -63297557 + B3 SINE B2 8 211 -5 8 1606 1594 42 5 0 chr1 133897960 133898150 -63297282 + B2_Mm1t SINE B2 3 193 0 8 1606 1342 14 0 0 chr1 133898237 133898385 -63297047 - B1_Mus1 SINE Alu 0 148 1 8 1606 576 235 29 22 chr1 133899058 133899197 -63296235 - ID_B1 SINE B4 -3 221 82 8 1606 3348 30 10 2 chr1 133899197 133899592 -63295840 - MTB LTR MaLR -2 398 1 8 1606 567 221 13 46 chr1 133899844 133899996 -63295436 - B1_Mur1 SINE Alu 0 149 3 8 1606 396 0 0 0 chr1 133900899 133900943 -63294489 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1606 244 236 0 0 chr1 133900948 133901003 -63294429 - tRNA-Ala-GCA tRNA tRNA -20 55 1 8 1606 407 281 74 0 chr1 133901166 133901301 -63294131 - B1F SINE Alu -4 145 1 8 1606 720 207 21 0 chr1 133901331 133901471 -63293961 - B1F2 SINE Alu -2 147 5 8 1606 275 350 0 70 chr1 133901738 133901867 -63293565 - MIRb SINE MIR -105 163 44 8 1606 701 210 27 34 chr1 133902019 133902167 -63293265 + B3A SINE B2 4 150 -48 8 1606 3020 241 142 26 chr1 133902167 133903088 -63292344 + Lx8 LINE L1 6444 7471 -2 8 1606 228 158 0 0 chr1 133903089 133903146 -63292286 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1606 459 246 189 0 chr1 133903146 133903268 -63292164 + ID_B1 SINE B4 78 222 -2 8 1606 235 370 76 0 chr1 133903286 133903405 -63292027 + B1F SINE Alu 15 142 -7 8 1606 329 219 7 180 chr1 133903623 133903762 -63291670 + PB1D10 SINE Alu 3 117 0 8 1606 224 79 53 0 chr1 133903764 133903802 -63291630 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 8 1606 263 250 12 73 chr1 133905695 133905777 -63289655 - ID4 SINE ID -6 77 1 8 1606 572 206 61 45 chr1 133906088 133906220 -63289212 - B1_Mur1 SINE Alu -11 138 5 8 1606 394 299 67 0 chr1 133906103 133906237 -63289195 - ID_B1 SINE B4 -17 207 65 8 1606 287 151 112 69 chr1 133906466 133906553 -63288879 - B1_Mur4 SINE Alu -6 114 17 8 1606 253 256 36 24 chr1 133906484 133906568 -63288864 - MT2B LTR ERVL -352 249 165 8 1606 1723 5 11 0 chr1 133906885 133907075 -63288357 - B2_Mm1a SINE B2 0 193 2 8 1606 277 313 75 68 chr1 133907496 133907818 -63287614 - L1MB8 LINE L1 -44 6134 5811 8 1606 478 239 170 32 chr1 133907885 133908132 -63287300 - B4 SINE B4 -1 291 11 8 1606 480 169 105 0 chr1 133908142 133908266 -63287166 - L1MB8 LINE L1 -352 5826 5690 8 1606 769 213 7 0 chr1 133908272 133908413 -63287019 - B1_Mur1 SINE Alu -1 148 7 8 1606 409 191 87 87 chr1 133908311 133908437 -63286995 - MT2B LTR ERVL -338 263 138 8 1606 239 257 151 16 chr1 133908490 133908676 -63286756 - L1MB8 LINE L1 -628 5556 5346 8 1606 818 201 0 26 chr1 133908968 133909121 -63286311 - B1_Mur4 SINE Alu 0 150 2 8 1606 270 256 48 60 chr1 133909328 133909411 -63286021 + MER20 DNA MER1_type 96 177 -42 8 1606 1493 68 16 5 chr1 133909834 133910026 -63285406 + B2_Mm2 SINE B2 1 194 -1 8 1606 1257 68 56 17 chr1 133910030 133910209 -63285223 + B2_Mm2 SINE B2 3 188 -7 8 1606 408 255 192 41 chr1 133910439 133910611 -63284821 + B3A SINE B2 1 198 0 8 1606 422 261 54 0 chr1 133910635 133910746 -63284686 + PB1D10 SINE Alu 1 117 0 8 1606 351 323 77 30 chr1 133910753 133910922 -63284510 + MIR SINE MIR 3 179 -83 8 1606 659 205 74 0 chr1 133911361 133911483 -63283949 - RSINE1 SINE B4 -29 136 6 8 1606 620 232 93 54 chr1 133911491 133911696 -63283736 - B3 SINE B2 -3 213 1 8 1606 521 271 144 10 chr1 133911809 133912003 -63283429 + ID_B1 SINE B4 2 221 -3 8 1606 529 233 110 26 chr1 133912024 133912105 -63283327 + B4A SINE B4 1 78 -214 8 1606 240 35 0 0 chr1 133912105 133912134 -63283298 + (CAA)n Simple_repeat Simple_repeat 3 31 0 8 1606 529 233 110 26 chr1 133912134 133912206 -63283226 + B4A SINE B4 79 167 -125 8 1606 397 237 40 0 chr1 133912421 133912497 -63282935 + B1F SINE Alu 3 81 -68 8 1606 180 250 0 0 chr1 133912549 133912613 -63282819 + T-rich Low_complexity Low_complexity 1 64 0 8 1606 751 175 80 7 chr1 133912616 133912754 -63282678 - B1_Mus1 SINE Alu 0 148 1 8 1606 24 32 0 0 chr1 133912770 133912801 -63282631 + AT_rich Low_complexity Low_complexity 1 31 0 8 1606 348 43 0 0 chr1 133912883 133912929 -63282503 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1606 1198 61 0 0 chr1 133912929 133913076 -63282356 - B1_Mus1 SINE Alu 0 148 2 8 1606 921 236 11 0 chr1 133913094 133913272 -63282160 - B3 SINE B2 -11 205 26 8 1606 270 315 92 9 chr1 133913296 133913310 -63282122 - ID_B1 SINE B4 -8 216 99 8 1606 472 263 21 0 chr1 133913310 133913405 -63282027 - B1_Mur2 SINE Alu -35 114 18 8 1606 416 363 52 67 chr1 133913453 133913722 -63281710 - B4 SINE B4 -26 266 2 8 1606 967 244 29 20 chr1 133915250 133915501 -63279931 + ID_B1 SINE B4 10 272 -20 8 1606 507 303 102 6 chr1 133916161 133916337 -63279095 - Tigger5 DNA MER2_type -2190 216 24 8 1606 1786 234 25 10 chr1 133916573 133916978 -63278454 - Lx8 LINE L1 -221 7252 6842 8 1606 374 250 0 0 chr1 133916978 133917054 -63278378 + B3A SINE B2 1 76 -122 8 1606 1306 271 99 18 chr1 133917120 133917733 -63277699 - Lx8 LINE L1 -622 6851 6189 8 1606 978 83 0 0 chr1 133917761 133917893 -63277539 - B1_Mus1 SINE Alu 0 148 17 8 1606 406 242 165 8 chr1 133918131 133918252 -63277180 + B1F SINE Alu 2 141 -8 8 1606 247 269 121 50 chr1 133918149 133918290 -63277142 + B4A SINE B4 104 254 -38 8 1606 335 121 0 17 chr1 133918290 133918349 -63277083 + (TAA)n Simple_repeat Simple_repeat 2 59 0 8 1606 949 173 11 16 chr1 133918674 133918856 -63276576 - B2_Mm2 SINE B2 -14 181 1 8 1606 271 227 85 23 chr1 133919383 133919508 -63275924 - Lx7 LINE L1 -1 7695 7576 8 1606 521 244 67 0 chr1 133919649 133919784 -63275648 - Lx7 LINE L1 -378 7318 7175 8 1606 216 122 0 0 chr1 133920418 133920459 -63274973 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1606 423 234 198 16 chr1 133920606 133920732 -63274700 + B1F1 SINE Alu 1 149 0 8 1606 813 263 38 24 chr1 133922134 133922344 -63273088 + ID_B1 SINE B4 10 222 -2 8 1606 219 178 0 0 chr1 133923155 133923193 -63272239 + T-rich Low_complexity Low_complexity 8 45 0 8 1606 1329 14 0 0 chr1 133923193 133923341 -63272091 - B1_Mus1 SINE Alu 0 148 1 8 1606 225 250 210 40 chr1 133923396 133923496 -63271936 - PB1D10 SINE Alu 0 117 1 8 1606 318 227 80 0 chr1 133923903 133923978 -63271454 - PB1D7 SINE Alu 0 120 40 8 1606 248 347 0 0 chr1 133924081 133924156 -63271276 - PB1D7 SINE Alu -44 76 2 8 1606 784 156 54 41 chr1 133926337 133926484 -63268948 - B1_Mur2 SINE Alu 0 149 1 8 1606 606 254 0 53 chr1 133927086 133927236 -63268196 + ID_B1 SINE B4 77 218 -6 8 1606 729 282 44 0 chr1 133927239 133927408 -63268024 + B3A SINE B2 6 182 -16 8 1606 945 0 0 0 chr1 133927408 133927513 -63267919 + (TTTCC)n Simple_repeat Simple_repeat 3 107 0 8 1606 729 282 44 0 chr1 133927513 133927524 -63267908 + B3A SINE B2 183 193 -5 8 1606 307 273 39 62 chr1 133927665 133927794 -63267638 - PB1 SINE Alu -1 126 1 8 1606 275 277 46 0 chr1 133927885 133927950 -63267482 + ID4_ SINE ID 14 81 -2 8 1606 632 234 90 26 chr1 133927893 133928082 -63267350 + ID_B1 SINE B4 23 223 -1 8 1606 26 0 0 0 chr1 133929158 133929184 -63266248 + AT_rich Low_complexity Low_complexity 1 26 0 8 1606 369 325 31 0 chr1 133929450 133929610 -63265822 - RSINE1 SINE B4 0 165 1 8 1606 192 135 0 0 chr1 133929613 133929650 -63265782 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1606 341 248 50 50 chr1 133929740 133929859 -63265573 - PB1D7 SINE Alu 0 120 2 8 1606 1162 60 20 0 chr1 133930995 133931146 -63264286 + B2_Mm2 SINE B2 3 156 -39 8 1606 360 218 318 11 chr1 133931747 133931923 -63263509 + L2b LINE L2 2580 2809 -610 8 1606 246 315 237 27 chr1 133931992 133932393 -63263039 + L2b LINE L2 2940 3425 -1 8 1606 563 297 52 5 chr1 133932416 133932629 -63262803 + ID_B1 SINE B4 2 224 0 8 1606 243 0 0 0 chr1 133932763 133932790 -63262642 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1606 1199 15 0 7 chr1 133932790 133932927 -63262505 - B1_Mm SINE Alu -11 136 1 9 1606 354 121 0 0 chr1 133932927 133932993 -63262439 + (T)n Simple_repeat Simple_repeat 1 66 0 9 1606 258 282 28 0 chr1 133933008 133933079 -63262353 + ID4_ SINE ID 4 76 -7 9 1606 563 40 0 13 chr1 133933096 133933171 -63262261 + (CATA)n Simple_repeat Simple_repeat 3 76 0 9 1606 318 26 0 0 chr1 133933197 133933236 -63262196 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1606 226 302 111 87 chr1 133934512 133934719 -63260713 - MER63D DNA AcHobo -725 336 125 9 1606 816 165 0 0 chr1 133934730 133934851 -63260581 + B1_Mur4 SINE Alu 1 121 -29 9 1606 279 224 0 17 chr1 133934851 133934910 -63260522 + B1_Mur4 SINE Alu 93 150 0 9 1606 280 274 158 0 chr1 133934913 133935008 -63260424 - MER63D DNA AcHobo -951 110 1 9 1606 247 49 49 0 chr1 133935734 133935775 -63259657 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1606 261 83 0 0 chr1 133935903 133935939 -63259493 + (CAT)n Simple_repeat Simple_repeat 2 37 0 9 1606 578 214 70 82 chr1 133936003 133936161 -63259271 - RSINE1 SINE B4 0 165 10 9 1606 646 164 109 22 chr1 133936292 133936429 -63259003 - B1_Mur1 SINE Alu 0 149 1 9 1606 576 42 0 0 chr1 133937556 133937627 -63257805 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 1606 369 0 0 0 chr1 133937627 133937667 -63257765 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1606 849 257 112 70 chr1 133938654 133939224 -63256208 + RMER13A LTR ERVK 25 680 -228 9 1606 224 273 7 59 chr1 133940155 133940307 -63255125 + CT-rich Low_complexity Low_complexity 3 146 0 9 1606 223 203 0 30 chr1 133940774 133940840 -63254592 + CT-rich Low_complexity Low_complexity 3 66 0 9 1606 228 274 234 31 chr1 133940840 133940858 -63254574 - B4A SINE B4 -46 246 93 9 1606 503 252 0 27 chr1 133940858 133940968 -63254464 - PB1D9 SINE Alu -6 114 8 9 1606 1464 78 16 16 chr1 133940993 133941187 -63254245 + B2_Mm2 SINE B2 1 194 -1 9 1606 225 0 0 0 chr1 133941437 133941462 -63253970 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 9 1606 1385 95 16 0 chr1 133942019 133942209 -63253223 + B2_Mm2 SINE B2 3 195 0 9 1606 2045 166 41 30 chr1 133943890 133944325 -63251107 + RMER10A LTR ERVL 1 440 -2 9 1606 1043 75 0 7 chr1 133944349 133944496 -63250936 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 9 1606 318 254 0 0 chr1 133944605 133944668 -63250764 - ID4 SINE ID -12 71 9 9 1606 316 279 0 0 chr1 133944742 133944821 -63250611 + ID4 SINE ID 2 80 -3 9 1606 391 279 48 9 chr1 133945188 133945293 -63250139 + PB1D10 SINE Alu 5 113 -4 9 1606 1266 168 15 0 chr1 133945303 133945500 -63249932 + B3 SINE B2 1 200 -16 9 1606 243 337 11 78 chr1 133945504 133945594 -63249838 + RSINE1 SINE B4 67 150 -15 9 1606 333 0 0 0 chr1 133945639 133945676 -63249756 + (TAA)n Simple_repeat Simple_repeat 2 38 0 9 1606 1689 141 6 83 chr1 133946399 133946748 -63248684 + RLTRETN_Mm LTR ERVK 1 322 0 9 1606 2323 85 16 0 chr1 133946979 133947296 -63248136 + ORR1A2 LTR MaLR 6 327 0 9 1606 378 0 0 0 chr1 133947335 133947377 -63248055 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1606 436 218 52 52 chr1 133947769 133947885 -63247547 - PB1D10 SINE Alu -1 116 1 9 1606 567 78 0 0 chr1 133947902 133947979 -63247453 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 9 1606 1046 197 52 0 chr1 133948007 133948200 -63247232 - B3 SINE B2 -10 206 4 9 1606 282 314 14 123 chr1 133948221 133948359 -63247073 + L3 LINE CR1 4324 4446 -43 9 1606 194 281 18 0 chr1 133948723 133948780 -63246652 - MIR SINE MIR -67 141 84 9 1606 265 226 177 46 chr1 133949394 133949524 -63245908 - MIR3 SINE MIR -60 148 2 9 1606 949 232 35 25 chr1 133951116 133951319 -63244113 + B3 SINE B2 5 209 -7 9 1606 226 363 64 23 chr1 133951781 133951953 -63243479 - L3b LINE CR1 -122 360 182 9 1606 1386 226 113 26 chr1 133953463 133953845 -63241587 + MTD LTR MaLR 5 419 0 9 1606 1573 42 15 20 chr1 133954859 133955055 -63240377 + B2_Mm2 SINE B2 1 195 0 9 1606 331 85 33 17 chr1 133955059 133955119 -63240313 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 9 1606 927 283 129 14 chr1 133955129 133955409 -63240023 + MTEa LTR MaLR 44 355 -24 9 1607 234 272 85 21 chr1 133955724 133955818 -63239614 + Tigger10 DNA Tigger 1005 1104 -739 9 1607 483 228 0 0 chr1 133957443 133957544 -63237888 + PB1D10 SINE Alu 17 117 0 9 1607 272 300 90 16 chr1 133958197 133958319 -63237113 + MIRc SINE MIR 31 161 -107 9 1607 213 162 0 0 chr1 133958593 133958630 -63236802 - MIR SINE MIR -63 145 109 9 1607 180 269 39 0 chr1 133958896 133958948 -63236484 + MIR SINE MIR 61 114 -148 9 1607 201 329 47 34 chr1 133959497 133959645 -63235787 + L2c LINE L2 3058 3207 -168 9 1607 282 302 79 8 chr1 133959743 133959870 -63235562 + 7SLRNA srpRNA srpRNA 2 117 -197 9 1607 202 293 92 13 chr1 133959873 133959949 -63235483 + L2c LINE L2 3302 3383 -4 9 1607 466 197 0 188 chr1 133960110 133960254 -63235178 - PB1D10 SINE Alu 0 117 1 9 1607 277 267 0 0 chr1 133960254 133960314 -63235118 - L1MB7 LINE L1 -119 6065 6006 9 1607 281 273 80 0 chr1 133960500 133960588 -63234844 - L1MB7 LINE L1 -394 5784 5690 9 1607 266 359 38 19 chr1 133960590 133960749 -63234683 + YREP_Mm Unknown Unknown 133 294 -1518 9 1607 630 278 0 0 chr1 133960640 133960773 -63234659 - ID_B1 SINE B4 -12 212 80 9 1607 523 186 0 56 chr1 133962343 133962450 -63232982 - PB1D10 SINE Alu 0 117 26 9 1607 437 331 39 0 chr1 133962454 133962584 -63232848 + MIRb SINE MIR 96 230 -38 9 1607 203 0 0 36 chr1 133962901 133962929 -63232503 + (CAA)n Simple_repeat Simple_repeat 2 28 0 9 1607 432 0 0 0 chr1 133963281 133963329 -63232103 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 9 1607 247 211 39 0 chr1 133964988 133965040 -63230392 - ID4_ SINE ID -3 80 27 9 1607 1162 202 10 0 chr1 133965906 133966114 -63229318 - B3 SINE B2 -6 210 1 9 1607 264 311 42 114 chr1 133966454 133966621 -63228811 + LTR48B LTR ERV1 2 156 -631 9 1607 186 43 0 0 chr1 133966635 133966658 -63228774 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1607 235 271 27 67 chr1 133966666 133966741 -63228691 - ID4_ SINE ID -9 74 3 9 1607 364 348 113 26 chr1 133966950 133967180 -63228252 + LTR48B LTR ERV1 395 644 0 9 1607 284 293 0 0 chr1 133967194 133967269 -63228163 + L1ME3 LINE L1 6084 6158 -4 9 1607 264 277 244 0 chr1 133967953 133967966 -63227466 + B1_Mur4 SINE Alu 1 148 -2 9 1607 399 236 170 0 chr1 133967966 133968072 -63227360 + ID_B1 SINE B4 99 222 -2 9 1607 775 206 14 14 chr1 133968163 133968306 -63227126 - B1_Mus1 SINE Alu 0 148 6 9 1607 310 320 23 31 chr1 133968381 133968510 -63226922 + Lx8 LINE L1 7203 7330 -143 9 1607 753 189 0 0 chr1 133968510 133968731 -63226701 + (CA)n Simple_repeat Simple_repeat 1 221 0 9 1607 833 182 2 0 chr1 133968885 133969368 -63226064 + (CA)n Simple_repeat Simple_repeat 1 484 0 9 1607 1063 182 64 5 chr1 133969645 133969849 -63225583 + B3 SINE B2 1 216 0 9 1607 717 101 126 44 chr1 133969850 133969985 -63225447 + B1_Mur3 SINE Alu 3 148 -1 9 1607 1179 43 0 0 chr1 133970023 133970163 -63225269 + B1_Mm SINE Alu 2 141 -6 9 1607 1096 64 43 0 chr1 133970165 133970306 -63225126 + B1_Mus2 SINE Alu 1 147 0 9 1607 486 120 0 0 chr1 133970306 133970381 -63225051 + (A)n Simple_repeat Simple_repeat 1 75 0 9 1607 467 216 69 0 chr1 133970385 133970487 -63224945 + RSINE1 SINE B4 2 110 -55 9 1607 264 309 19 76 chr1 133971000 133971105 -63224327 - PB1D7 SINE Alu 0 120 22 9 1607 660 313 0 0 chr1 133971168 133971315 -63224117 - RSINE1 SINE B4 -18 147 1 9 1607 238 250 18 0 chr1 133971348 133971404 -63224028 + tRNA-Ala-GCA tRNA tRNA 3 59 -16 9 1607 233 351 13 13 chr1 133971404 133971419 -63224013 + ID4 SINE ID 24 80 -3 9 1607 808 250 31 0 chr1 133972986 133973146 -63222286 - ID_B1 SINE B4 -56 168 4 9 1607 461 229 128 0 chr1 133973654 133973763 -63221669 - ID_B1 SINE B4 -100 124 2 9 1607 538 256 0 49 chr1 133973773 133973896 -63221536 - PB1D10 SINE Alu 0 117 1 9 1607 251 359 0 0 chr1 133973835 133973913 -63221519 - B4 SINE B4 -146 146 69 9 1607 2203 79 72 10 chr1 133973914 133974221 -63221211 + ORR1A3 LTR MaLR 1 326 0 9 1607 957 163 7 0 chr1 133974269 133974416 -63221016 - B1_Mur4 SINE Alu 0 150 3 9 1607 263 276 0 50 chr1 133974555 133974635 -63220797 - L1ME3 LINE L1 -62 6100 6025 9 1607 319 135 10 27 chr1 133974734 133974821 -63220611 + B1_Mur4 SINE Alu 55 140 -9 9 1607 302 290 144 19 chr1 133974847 133975104 -63220328 - L1ME3 LINE L1 -461 5701 5413 9 1607 1043 215 15 0 chr1 133975283 133975478 -63219954 + MTD LTR MaLR 13 210 -209 9 1607 343 205 88 28 chr1 133975480 133975579 -63219853 + B1_Mur1 SINE Alu 2 106 -43 9 1607 428 246 73 8 chr1 133975566 133975689 -63219743 + MTD LTR MaLR 200 330 -89 9 1607 24 0 0 0 chr1 133975702 133975726 -63219706 + AT_rich Low_complexity Low_complexity 1 24 0 9 1607 429 232 12 129 chr1 133976051 133976214 -63219218 - B1F1 SINE Alu -1 148 5 9 1607 277 262 138 0 chr1 133976293 133976373 -63219059 - PB1D10 SINE Alu -9 108 18 9 1607 376 270 18 47 chr1 133976375 133976546 -63218886 - L1M2 LINE L1 -1396 4747 4582 9 1607 425 243 85 0 chr1 133976548 133976674 -63218758 - PB1D10 SINE Alu -1 148 3 9 1607 229 273 76 0 chr1 133976620 133976686 -63218746 - B4A SINE B4 -146 146 76 9 1607 272 300 33 0 chr1 133976704 133976794 -63218638 - MTEb LTR MaLR 0 379 287 9 1607 239 73 49 0 chr1 133976825 133976866 -63218566 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 9 1607 245 246 29 0 chr1 133977027 133977096 -63218336 - MLT1A1 LTR MaLR -274 134 64 9 1607 1009 224 92 133 chr1 133977204 133977586 -63217846 - MTE2a LTR MaLR -6 373 8 1 1607 2113 129 9 58 chr1 133977790 133978136 -63217296 - ORR1A4 LTR MaLR 0 329 1 1 1607 10529 141 23 109 chr1 133978136 133980284 -63215148 - ORR1A4-int LTR MaLR 0 1963 1 1 1607 2078 141 31 9 chr1 133980284 133980606 -63214826 - ORR1A4 LTR MaLR 0 329 1 1 1607 475 202 138 0 chr1 133980945 133981039 -63214393 + B1F SINE Alu 32 138 -11 1 1607 1093 209 112 30 chr1 133981394 133981661 -63213771 + MTD LTR MaLR 2 290 -129 1 1607 584 87 11 0 chr1 133981706 133981798 -63213634 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1607 1224 120 120 0 chr1 133983085 133983285 -63212147 - URR1A DNA MER1_type -2 224 1 1 1607 1195 47 68 28 chr1 133983488 133983664 -63211768 + L1Md_F3 LINE L1 6402 6584 0 1 1607 216 0 0 0 chr1 133983896 133983920 -63211512 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1607 303 246 58 0 chr1 133983926 133983995 -63211437 - L1MB7 LINE L1 -26 6158 6086 1 1607 628 244 0 0 chr1 133984011 133984130 -63211302 - B4A SINE B4 -166 126 8 1 1607 455 159 47 47 chr1 133984186 133984272 -63211160 - ID_B1 SINE B4 0 224 139 1 1607 326 241 306 0 chr1 133984197 133984305 -63211127 - B1F1 SINE Alu -7 142 2 1 1607 582 15 0 0 chr1 133984305 133984372 -63211060 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 1 1607 1095 139 0 0 chr1 133984375 133984555 -63210877 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1 1607 462 245 10 0 chr1 133984579 133984681 -63210751 - PB1D7 SINE Alu 0 120 18 1 1607 441 269 9 9 chr1 133984811 133984920 -63210512 - L3 LINE CR1 -1287 3202 3094 1 1607 1232 182 14 9 chr1 133985257 133985479 -63209953 + URR1B DNA MER1_type 3 225 0 1 1607 303 316 60 0 chr1 133985680 133985813 -63209619 - L1MD LINE L1 -2914 3232 3092 1 1607 637 238 0 16 chr1 133985814 133985942 -63209490 - ID_B1 SINE B4 0 224 99 1 1607 23 54 0 0 chr1 133985948 133985985 -63209447 + AT_rich Low_complexity Low_complexity 1 37 0 1 1607 318 304 33 50 chr1 133986036 133986157 -63209275 - RSINE1 SINE B4 -46 119 1 1 1607 2406 109 78 3 chr1 133986656 133987013 -63208419 + ORR1C2 LTR MaLR 1 384 0 1 1607 918 164 161 17 chr1 133987466 133987640 -63207792 - URR1A DNA MER1_type -27 199 1 1 1607 256 197 53 120 chr1 133987640 133987702 -63207730 - B1F1 SINE Alu -59 58 2 1 1607 756 200 28 66 chr1 133987809 133987930 -63207502 - B3 SINE B2 -1 215 100 1 1607 2511 74 6 18 chr1 133987930 133988261 -63207171 - ORR1A2 LTR MaLR 0 327 1 1 1607 756 200 28 66 chr1 133988261 133988321 -63207111 - B3 SINE B2 -117 99 41 1 1607 2089 224 111 10 chr1 133988325 133988820 -63206612 - RMER19B LTR ERVK 0 902 358 1 1607 1779 137 38 58 chr1 133989116 133989319 -63206113 - RMER1B Other Other -2 1064 867 1 1607 1382 85 21 0 chr1 133989319 133989508 -63205924 - B2_Mm1a SINE B2 0 193 1 1 1607 2188 210 31 82 chr1 133989508 133990190 -63205242 - RMER1B Other Other -200 866 8 1 1607 274 98 19 19 chr1 133990350 133990374 -63205058 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 1607 1215 62 0 0 chr1 133990374 133990520 -63204912 - B1_Mus2 SINE Alu 0 147 2 1 1607 274 98 19 19 chr1 133990520 133990547 -63204885 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1 1607 270 317 0 0 chr1 133990552 133990612 -63204820 - ID4_ SINE ID -21 62 3 1 1607 1239 93 15 67 chr1 133990632 133990786 -63204646 - B2_Mm2 SINE B2 -9 186 35 1 1607 1457 53 16 0 chr1 133990786 133990975 -63204457 - B2_Mm1t SINE B2 0 193 2 1 1607 1239 93 15 67 chr1 133990975 133991015 -63204417 - B2_Mm2 SINE B2 -161 34 2 1 1607 261 128 0 0 chr1 133991099 133991138 -63204294 - B2_Mm2 SINE B2 -155 40 2 1 1607 364 235 13 2 chr1 133991335 133991429 -63204003 + ID4 SINE ID 2 95 -57 1 1607 352 81 351 9 chr1 133991579 133991690 -63203742 - B2_Mm2 SINE B2 0 195 47 1 1607 1049 157 5 35 chr1 133991727 133991925 -63203507 - B2_Mm1t SINE B2 -1 192 1 1 1607 342 286 0 67 chr1 133992679 133992707 -63202725 + polypyrimidine Low_complexity Low_complexity 87 114 0 1 1607 367 268 41 0 chr1 133992707 133992804 -63202628 - PB1D10 SINE Alu -16 101 1 1 1607 342 286 0 67 chr1 133992804 133992895 -63202537 + polypyrimidine Low_complexity Low_complexity 3 86 0 1 1607 249 214 0 67 chr1 133993584 133993644 -63201788 - L2b LINE L2 -13 3362 3307 1 1607 188 237 85 0 chr1 133993633 133993692 -63201740 - MIR SINE MIR -97 165 102 1 1607 220 383 21 57 chr1 133994229 133994370 -63201062 - MER5A DNA MER1_type -6 183 48 1 1607 1581 186 121 71 chr1 133994592 133994973 -63200459 - MTD LTR MaLR -8 411 12 1 1607 284 238 24 48 chr1 133995285 133995369 -63200063 + MIRb SINE MIR 37 118 -150 1 1607 324 0 0 0 chr1 133995377 133995413 -63200019 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1607 675 160 0 0 chr1 133995502 133995677 -63199755 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1607 356 238 9 95 chr1 133997215 133997331 -63198101 + U6 snRNA snRNA 1 106 -1 1 1607 519 31 0 0 chr1 133997335 133997400 -63198032 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1607 1397 156 14 0 chr1 133997590 133997802 -63197630 + B3 SINE B2 1 215 -1 1 1607 531 252 50 139 chr1 133997842 133998123 -63197309 + B4A SINE B4 37 292 0 1 1607 291 219 47 0 chr1 133998218 133998282 -63197150 + ID4 SINE ID 6 72 -11 1 1607 282 260 89 25 chr1 133999218 133999297 -63196135 - PB1 SINE Alu 0 127 44 1 1607 305 217 0 12 chr1 133999330 133999414 -63196018 + CT-rich Low_complexity Low_complexity 2 84 0 1 1607 885 171 7 20 chr1 133999415 133999564 -63195868 - B1_Mur3 SINE Alu -1 148 2 1 1607 400 209 0 0 chr1 133999602 133999669 -63195763 + B1_Mur3 SINE Alu 4 70 -79 1 1607 778 185 209 23 chr1 134000059 134000236 -63195196 + B3 SINE B2 2 211 -5 1 1607 237 328 51 42 chr1 134000505 134000623 -63194809 - MIRb SINE MIR -92 176 58 2 1607 241 279 29 0 chr1 134000719 134000787 -63194645 - ID SINE ID -145 79 10 3 1607 1209 121 44 44 chr1 134001489 134001591 -63193841 + URR1B DNA MER1_type 1 100 -125 4 1607 1963 125 11 169 chr1 134001591 134002064 -63193368 - RMER10B LTR ERVL 0 398 1 5 1607 1209 121 44 44 chr1 134002064 134002186 -63193246 + URR1B DNA MER1_type 101 225 0 4 1607 504 289 60 160 chr1 134002187 134002537 -63192895 + MTE2b LTR MaLR 36 350 -29 6 1607 237 286 13 0 chr1 134002563 134002640 -63192792 + MTE2a LTR MaLR 273 350 -29 7 1607 355 149 0 26 chr1 134002655 134002731 -63192701 + (TTA)n Simple_repeat Simple_repeat 2 75 0 8 1607 1363 273 49 27 chr1 134002802 134003309 -63192123 + MTE2a-int LTR MaLR 1 651 -929 7 1607 1616 269 64 11 chr1 134003901 134004352 -63191080 + MTE2a-int LTR MaLR 875 1349 -231 7 1607 6043 115 65 35 chr1 134004352 134005032 -63190400 + RLTR25A LTR ERVK 1 695 -408 9 1607 1196 98 79 17 chr1 134005032 134005209 -63190223 + B2_Mm2 SINE B2 2 189 -6 1 1607 6043 115 65 35 chr1 134005209 134005599 -63189833 + RLTR25A LTR ERVK 696 1102 -1 9 1607 235 271 124 10 chr1 134005603 134005700 -63189732 + MTE2a-int LTR MaLR 1333 1440 -69 7 1607 639 164 0 0 chr1 134005671 134005775 -63189657 + B2_Mm2 SINE B2 7 110 -85 1 1607 2684 62 149 0 chr1 134005775 134006143 -63189289 + Lx3A LINE L1 6558 6980 -1 1 1607 377 254 116 61 chr1 134006226 134006373 -63189059 + MTE2a-int LTR MaLR 1423 1577 -3 7 1607 956 297 109 7 chr1 134006395 134006733 -63188699 + MTE2b LTR MaLR 38 379 0 1 1607 247 261 0 44 chr1 134008693 134008761 -63186671 - ID4 SINE ID -14 69 5 1 1607 221 212 0 70 chr1 134008895 134008981 -63186451 + G-rich Low_complexity Low_complexity 4 83 0 1 1607 228 172 0 0 chr1 134009458 134009516 -63185916 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 1 1607 236 196 18 0 chr1 134009517 134009573 -63185859 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 1 1607 401 183 18 24 chr1 134009575 134009743 -63185689 + (CAGAGA)n Simple_repeat Simple_repeat 1 167 0 1 1607 269 302 0 0 chr1 134009743 134009806 -63185626 - B1_Mus2 SINE Alu -83 64 2 1 1607 265 371 114 0 chr1 134011613 134011780 -63183652 + MIRc SINE MIR 53 238 -30 2 1607 414 0 0 0 chr1 134014782 134014828 -63180604 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1607 382 278 71 60 chr1 134016139 134016323 -63179109 - MIRb SINE MIR -27 241 56 2 1607 182 118 29 0 chr1 134016837 134016871 -63178561 + (CCTG)n Simple_repeat Simple_repeat 3 37 0 2 1607 711 230 31 31 chr1 134017548 134017741 -63177691 - B2_Mm2 SINE B2 -1 194 2 2 1607 241 197 42 70 chr1 134017743 134017814 -63177618 - B1F SINE Alu -72 77 9 2 1607 225 270 56 65 chr1 134017744 134017851 -63177581 - ID_B1 SINE B4 -70 154 49 2 1607 218 182 0 0 chr1 134018298 134018342 -63177090 + MIR SINE MIR 82 125 -83 2 1607 461 84 14 0 chr1 134019719 134019790 -63175642 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1607 712 203 15 0 chr1 134019812 134019945 -63175487 - B1_Mur1 SINE Alu -8 141 7 2 1607 204 40 0 0 chr1 134021067 134021092 -63174340 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1607 604 333 6 0 chr1 134021093 134021273 -63174159 - B3A SINE B2 -16 182 2 3 1607 379 299 0 0 chr1 134021280 134021387 -63174045 - PB1D10 SINE Alu -9 108 2 3 1607 432 0 0 0 chr1 134021634 134021682 -63173750 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1607 442 260 48 8 chr1 134022085 134022209 -63173223 + L3b LINE CR1 163 291 -191 3 1607 765 159 267 12 chr1 134023303 134023475 -63171957 + B3 SINE B2 1 216 0 3 1607 374 337 80 0 chr1 134023675 134023850 -63171582 - L2 LINE L2 -579 2840 2652 3 1607 688 142 118 0 chr1 134025671 134025798 -63169634 - B1F2 SINE Alu -4 145 4 3 1607 1211 61 7 0 chr1 134026320 134026467 -63168965 - B1_Mus1 SINE Alu 0 148 1 3 1607 1158 80 0 0 chr1 134027603 134028086 -63167346 + (GGA)n Simple_repeat Simple_repeat 1 483 0 3 1607 1005 122 0 0 chr1 134028098 134028420 -63167012 + (GGA)n Simple_repeat Simple_repeat 1 322 0 3 1607 293 298 233 11 chr1 134028524 134028907 -63166525 + L1MA8 LINE L1 5617 6090 -222 4 1607 242 281 16 0 chr1 134028945 134029009 -63166423 + L1MA8 LINE L1 6195 6259 -41 4 1607 1412 67 39 0 chr1 134029027 134029205 -63166227 + B2_Mm2 SINE B2 2 186 -9 4 1607 897 164 211 0 chr1 134029215 134029386 -63166046 + B3 SINE B2 1 207 -9 4 1607 253 361 57 30 chr1 134030104 134030401 -63165031 + L2 LINE L2 2122 2426 -993 4 1607 420 250 80 46 chr1 134030828 134030979 -63164453 - Cheshire DNA MER1_type -2209 211 56 4 1607 606 284 0 7 chr1 134030973 134031115 -63164317 + B1F2 SINE Alu 9 149 0 4 1607 733 234 131 5 chr1 134031117 134031315 -63164117 + ID_B1 SINE B4 2 224 0 4 1607 229 284 135 0 chr1 134031315 134031389 -63164043 - Cheshire DNA MER1_type -2338 82 1 4 1607 223 325 11 11 chr1 134032388 134032475 -63162957 - MIRb SINE MIR -118 150 64 4 1607 186 43 0 0 chr1 134032609 134032632 -63162800 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1607 602 252 78 70 chr1 134032633 134032803 -63162629 + B4A SINE B4 49 232 -60 4 1607 387 0 0 0 chr1 134032803 134032846 -63162586 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 5 1607 602 252 78 70 chr1 134032846 134032905 -63162527 + B4A SINE B4 233 280 -12 4 1607 342 0 0 0 chr1 134032910 134032948 -63162484 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 1607 610 224 51 29 chr1 134032953 134033091 -63162341 + B1_Mur3 SINE Alu 1 141 -8 5 1607 264 59 0 0 chr1 134033415 134033449 -63161983 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1607 810 113 0 0 chr1 134034205 134034329 -63161103 + (GGA)n Simple_repeat Simple_repeat 2 125 0 5 1607 31 0 0 0 chr1 134035851 134035882 -63159550 + AT_rich Low_complexity Low_complexity 1 31 0 5 1607 860 262 28 9 chr1 134036947 134037159 -63158273 + B3 SINE B2 1 216 0 5 1607 269 287 30 76 chr1 134037581 134037713 -63157719 + MT2B2 LTR ERVL 115 240 -344 5 1607 472 234 121 0 chr1 134037642 134037766 -63157666 + B1F2 SINE Alu 6 144 -5 5 1607 259 130 0 36 chr1 134037766 134037822 -63157610 + GA-rich Low_complexity Low_complexity 1 54 0 5 1607 243 342 61 0 chr1 134037966 134038080 -63157352 - L2b LINE L2 -10 3365 3245 6 1607 466 281 84 62 chr1 134038776 134039018 -63156414 + MIRb SINE MIR 15 257 -5 6 1607 196 369 199 0 chr1 134039023 134039164 -63156268 - L2b LINE L2 0 3375 3207 6 1607 256 298 54 71 chr1 134039346 134039455 -63155977 + B1F SINE Alu 14 120 -27 6 1607 277 279 37 25 chr1 134039455 134039536 -63155896 + ID SINE ID 2 83 -141 6 1607 357 255 58 19 chr1 134039572 134039667 -63155765 + PB1D10 SINE Alu 7 107 -10 6 1607 204 40 0 0 chr1 134039667 134039692 -63155740 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1607 357 265 41 632 chr1 134039692 134039732 -63155700 + PB1D10 SINE Alu 105 138 -11 6 1607 999 139 0 0 chr1 134040601 134040781 -63154651 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1607 1562 57 0 15 chr1 134042189 134042385 -63153047 - B2_Mm2 SINE B2 0 195 3 6 1607 233 341 0 0 chr1 134042523 134042605 -63152827 + GA-rich Low_complexity Low_complexity 3 84 0 6 1607 335 231 15 0 chr1 134043172 134043237 -63152195 + ID4 SINE ID 1 66 -17 7 1607 1244 28 7 0 chr1 134043553 134043698 -63151734 + B1_Mus2 SINE Alu 2 147 0 7 1607 367 35 17 17 chr1 134043699 134043757 -63151675 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 7 1607 2280 86 114 0 chr1 134044044 134044394 -63151038 - ORR1B1 LTR MaLR 0 394 5 7 1607 364 319 79 33 chr1 134044551 134044765 -63150667 + RMER15 LTR ERVL 347 570 -5 7 1607 251 360 92 39 chr1 134045624 134045754 -63149678 + RSINE1 SINE B4 9 145 -20 7 1607 439 17 16 16 chr1 134045771 134045832 -63149600 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1607 186 223 68 0 chr1 134048533 134048608 -63146824 - MIR SINE MIR -106 162 80 7 1607 360 0 0 0 chr1 134048871 134048911 -63146521 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1607 188 286 36 0 chr1 134048920 134048976 -63146456 + MIRb SINE MIR 163 220 -48 7 1607 362 272 119 73 chr1 134048977 134049195 -63146237 + B4A SINE B4 2 229 -63 8 1607 466 242 86 75 chr1 134049194 134049318 -63146114 + B4A SINE B4 94 218 -74 8 1607 423 0 0 0 chr1 134049318 134049365 -63146067 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1607 466 242 86 75 chr1 134049365 134049414 -63146018 + B4A SINE B4 219 269 -23 8 1607 571 116 0 0 chr1 134049420 134049506 -63145926 - B1_Mus2 SINE Alu -37 110 25 8 1607 311 250 65 37 chr1 134049430 134049538 -63145894 - MT2B LTR ERVL -346 255 145 8 1607 236 197 0 62 chr1 134050181 134050246 -63145186 + G-rich Low_complexity Low_complexity 4 64 0 8 1607 189 0 0 0 chr1 134050830 134050851 -63144581 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1607 1207 61 0 7 chr1 134050851 134050999 -63144433 - B1_Mus1 SINE Alu 0 148 2 8 1607 304 267 19 38 chr1 134051025 134051114 -63144318 + ID_B1 SINE B4 122 210 -14 8 1607 1257 41 7 0 chr1 134051114 134051261 -63144171 + B1_Mus1 SINE Alu 1 148 0 8 1607 304 267 19 38 chr1 134051261 134051276 -63144156 + ID_B1 SINE B4 211 224 0 8 1607 1799 125 57 129 chr1 134051387 134051742 -63143690 - RMER17C LTR ERVK 0 410 104 9 1607 1417 99 5 0 chr1 134051742 134051934 -63143498 + B2_Mm2 SINE B2 2 194 -1 9 1607 1799 125 57 129 chr1 134051934 134052020 -63143412 - RMER17C LTR ERVK -307 103 1 9 1607 340 241 0 46 chr1 134052104 134052191 -63143241 - PB1D10 SINE Alu -34 83 1 9 1607 269 363 0 50 chr1 134052191 134052226 -63143206 - ID SINE ID -147 77 49 9 1607 1280 41 0 0 chr1 134053417 134053564 -63141868 + B1_Mm SINE Alu 1 147 0 9 1607 566 253 82 47 chr1 134053564 134053796 -63141636 + MER58B DNA MER1_type 101 340 -1 9 1607 319 355 0 0 chr1 134057486 134057593 -63137839 + MIR SINE MIR 18 124 -138 9 1607 184 122 40 20 chr1 134058509 134058559 -63136873 + A-rich Low_complexity Low_complexity 2 52 0 9 1607 448 260 130 38 chr1 134058807 134058991 -63136441 - L1M4 LINE L1 -406 5778 5578 9 1607 409 156 21 0 chr1 134059004 134059100 -63136332 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 9 1607 1060 75 0 20 chr1 134059100 134059249 -63136183 - B1_Mus1 SINE Alu 0 148 3 1 1607 486 0 0 0 chr1 134059257 134059311 -63136121 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1 1607 1183 97 28 0 chr1 134059311 134059487 -63135945 - B2_Mm1a SINE B2 -12 181 1 1 1607 351 269 19 0 chr1 134059547 134059651 -63135781 - PB1D10 SINE Alu -7 110 5 1 1607 286 337 176 45 chr1 134059681 134060057 -63135375 - LTR16C LTR ERVL -60 429 5 1 1607 225 320 58 72 chr1 134060122 134060260 -63135172 + MT2B LTR ERVL 125 260 -341 1 1607 688 248 10 16 chr1 134060142 134060299 -63135133 + ID_B1 SINE B4 77 224 -68 1 1607 424 256 0 33 chr1 134060624 134060745 -63134687 - PB1D9 SINE Alu -2 118 2 1 1607 257 239 17 17 chr1 134061238 134061357 -63134075 + GA-rich Low_complexity Low_complexity 3 121 0 1 1607 267 263 29 48 chr1 134061365 134061469 -63133963 + G-rich Low_complexity Low_complexity 2 103 0 1 1607 529 295 110 0 chr1 134062029 134062229 -63133203 - ID_B1 SINE B4 -1 223 2 1 1607 419 289 13 20 chr1 134062234 134062383 -63133049 - B1F2 SINE Alu -2 147 5 1 1607 1110 55 7 0 chr1 134062401 134062547 -63132885 - B1_Mus2 SINE Alu 0 147 1 1 1607 596 255 51 60 chr1 134062560 134062777 -63132655 - B3 SINE B2 -1 215 1 1 1607 1178 86 34 11 chr1 134062906 134063083 -63132349 - B2_Mm2 SINE B2 -14 181 1 1 1607 254 164 18 0 chr1 134063180 134063235 -63132197 + CT-rich Low_complexity Low_complexity 2 57 0 1 1607 334 338 12 6 chr1 134063428 134063592 -63131840 - L1MB5 LINE L1 -278 5896 5732 1 1607 804 141 8 0 chr1 134063696 134063838 -63131594 + B1_Mur4 SINE Alu 2 145 -5 1 1607 288 0 0 0 chr1 134063838 134063870 -63131562 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1607 280 264 128 28 chr1 134063878 134063987 -63131445 - B1F2 SINE Alu -12 137 18 1 1607 743 170 187 0 chr1 134064245 134064416 -63131016 - B3 SINE B2 -13 203 1 1 1607 251 181 71 24 chr1 134064914 134064999 -63130433 + (CCCTG)n Simple_repeat Simple_repeat 1 89 0 1 1607 271 228 49 37 chr1 134065633 134065715 -63129717 + ORR1E LTR MaLR 1 83 -291 1 1607 596 259 14 7 chr1 134066066 134066206 -63129226 + B1_Mus2 SINE Alu 2 142 -5 1 1607 633 27 0 0 chr1 134066211 134066286 -63129146 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1 1607 189 302 0 19 chr1 134067315 134067369 -63128063 - MIRc SINE MIR -101 167 115 1 1607 196 260 13 76 chr1 134067475 134067554 -63127878 - L2 LINE L2 -1907 1512 1439 1 1607 1159 48 0 0 chr1 134067762 134067908 -63127524 + B1_Mus1 SINE Alu 3 148 0 1 1607 608 335 111 32 chr1 134068126 134068759 -63126673 - L2a LINE L2 -321 3105 2423 1 1607 3486 67 156 0 chr1 134068823 134069328 -63126104 - MT2B2 LTR ERVL 0 584 1 1 1607 857 265 45 5 chr1 134069350 134069551 -63125881 + ID_B1 SINE B4 2 210 -14 1 1607 1618 31 0 0 chr1 134069696 134069889 -63125543 + B2_Mm1a SINE B2 1 193 0 1 1607 403 356 35 90 chr1 134069900 134070212 -63125220 + MLT1C LTR MaLR 172 466 -1 1 1607 833 172 20 2 chr1 134070283 134070470 -63124962 - B3 SINE B2 0 198 1 1 1607 289 307 0 0 chr1 134070813 134070888 -63124544 + BC1_Mm scRNA scRNA 9 83 -69 1 1607 1092 67 102 12 chr1 134070898 134071064 -63124368 - B2_Mm2 SINE B2 -14 181 1 1 1607 509 162 0 9 chr1 134071092 134071204 -63124228 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1607 848 60 101 43 chr1 134071263 134071277 -63124155 - B1_Mus2 SINE Alu 0 147 138 1 1607 261 0 0 0 chr1 134071277 134071306 -63124126 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1607 848 60 101 43 chr1 134071306 134071430 -63124002 - B1_Mus2 SINE Alu -10 137 1 1 1607 261 0 0 0 chr1 134071434 134071463 -63123969 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1607 693 266 70 0 chr1 134071473 134071672 -63123760 - B3 SINE B2 0 216 4 1 1607 498 108 0 0 chr1 134072497 134072571 -63122861 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1607 1277 105 11 0 chr1 134072571 134072761 -63122671 - B2_Mm1t SINE B2 0 193 2 1 1607 276 109 9 65 chr1 134072768 134072876 -63122556 + (TTTG)n Simple_repeat Simple_repeat 1 102 0 1 1607 1101 76 7 0 chr1 134072877 134073022 -63122410 - B1_Mus2 SINE Alu -1 146 1 1 1607 248 186 0 0 chr1 134073025 134073068 -63122364 - RLTR24 LTR ERV1 -486 43 1 1 1607 597 275 71 151 chr1 134073408 134073970 -63121462 - RLTR19-int LTR ERVK -1756 4381 3865 1 1607 1136 62 7 0 chr1 134073996 134074142 -63121290 - B1_Mus1 SINE Alu 0 148 2 1 1607 1221 34 0 0 chr1 134074181 134074328 -63121104 - B1_Mus2 SINE Alu 0 147 1 1 1607 704 210 134 36 chr1 134074845 134075122 -63120310 - RLTR19-int LTR ERVK -3254 2883 2580 1 1607 675 187 45 0 chr1 134075134 134075268 -63120164 - B1_Mur3 SINE Alu 0 149 10 1 1607 454 308 17 17 chr1 134075271 134075512 -63119920 - RLTR19-int LTR ERVK -3556 2581 2341 1 1607 1117 102 56 17 chr1 134075528 134075707 -63119725 - B2_Mm1t SINE B2 -6 187 2 1 1607 320 129 129 0 chr1 134075709 134075779 -63119653 - RLTR19-int LTR ERVK -3394 2128 2050 1 1607 1420 73 16 0 chr1 134075902 134076093 -63119339 + B2_Mm2 SINE B2 2 195 0 1 1607 1044 46 0 0 chr1 134076360 134076490 -63118942 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 1 1607 964 101 22 0 chr1 134076492 134076631 -63118801 - B1_Mus1 SINE Alu -6 142 1 1 1607 23 0 0 0 chr1 134076631 134076654 -63118778 + AT_rich Low_complexity Low_complexity 1 23 0 1 1607 1178 82 54 5 chr1 134077025 134077210 -63118222 - B2_Mm2 SINE B2 -1 194 1 1 1607 1095 88 0 0 chr1 134077213 134077360 -63118072 - B1_Mus1 SINE Alu 0 148 2 1 1607 365 225 0 0 chr1 134077981 134078052 -63117380 - RLTR19-int LTR ERVK -3915 1607 1537 1 1607 230 53 0 26 chr1 134078084 134078118 -63117314 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1607 1134 82 0 0 chr1 134078118 134078265 -63117167 - B1_Mm SINE Alu 0 147 1 1 1607 821 243 82 29 chr1 134078348 134078637 -63116795 - RLTR42-int LTR ERVK -4187 1335 1141 1 1607 180 0 0 0 chr1 134078817 134078837 -63116595 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1607 795 75 0 0 chr1 134079035 134079142 -63116290 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 1 1607 343 300 0 20 chr1 134079780 134079882 -63115550 - RLTR24 LTR ERV1 -429 100 1 1 1607 673 178 23 0 chr1 134080416 134080545 -63114887 + RMER4B LTR ERVK 21 152 -433 1 1607 1326 84 0 0 chr1 134081470 134081781 -63113651 + (TTTC)n Simple_repeat Simple_repeat 1 311 0 1 1607 1236 91 17 0 chr1 134081781 134081956 -63113476 - B2_Mm2 SINE B2 -16 179 2 1 1607 224 245 0 0 chr1 134082011 134082064 -63113368 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 1607 180 0 0 0 chr1 134082086 134082106 -63113326 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1607 624 246 0 15 chr1 134082106 134082238 -63113194 - B1_Mur1 SINE Alu -13 136 7 1 1607 1119 93 6 6 chr1 134082285 134082448 -63112984 + B2_Mm2 SINE B2 1 163 -32 1 1607 207 0 0 0 chr1 134082448 134082471 -63112961 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1607 337 233 144 0 chr1 134082476 134082566 -63112866 - PB1D10 SINE Alu -13 104 2 1 1607 405 0 0 0 chr1 134082601 134082646 -63112786 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1607 442 309 138 46 chr1 134082651 134082912 -63112520 - B4A SINE B4 -7 285 1 1 1607 297 0 0 0 chr1 134082938 134082971 -63112461 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1607 727 293 78 43 chr1 134082975 134083129 -63112303 - B4A SINE B4 0 292 125 1 1607 2905 164 65 20 chr1 134083129 134083714 -63111718 - RMER19C LTR ERVK 0 611 1 1 1607 727 293 78 43 chr1 134083714 134083841 -63111591 - B4A SINE B4 -168 124 1 1 1607 1126 82 0 0 chr1 134084660 134084806 -63110626 + B1_Mus2 SINE Alu 2 147 0 1 1607 237 33 0 0 chr1 134085887 134085917 -63109515 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1608 46 74 0 0 chr1 134087075 134087170 -63108262 + GC_rich Low_complexity Low_complexity 1 95 0 1 1608 183 246 0 0 chr1 134087279 134087336 -63108096 + (CGTG)n Simple_repeat Simple_repeat 3 59 0 1 1608 318 50 0 0 chr1 134087858 134087898 -63107534 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1608 237 231 15 44 chr1 134087977 134088045 -63107387 + GA-rich Low_complexity Low_complexity 3 68 0 1 1608 321 169 0 0 chr1 134090047 134090106 -63105326 + CT-rich Low_complexity Low_complexity 2 60 0 1 1608 195 42 0 0 chr1 134091318 134091342 -63104090 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 1 1608 225 0 0 0 chr1 134091806 134091831 -63103601 + (CAGGG)n Simple_repeat Simple_repeat 2 26 0 1 1608 287 262 8 38 chr1 134092062 134092184 -63103248 - RSINE1 SINE B4 -1 164 7 1 1608 237 179 35 18 chr1 134092878 134092935 -63102497 + G-rich Low_complexity Low_complexity 3 60 0 1 1608 759 115 0 8 chr1 134094033 134094156 -63101276 + URR1B DNA MER1_type 104 225 0 1 1608 348 214 137 41 chr1 134094156 134094179 -63101253 - CYRA11_Mm Unknown Y-chromosome -324 293 134 1 1608 441 323 104 16 chr1 134095580 134095772 -63099660 - MIR SINE MIR -6 256 48 1 1608 204 143 0 0 chr1 134096131 134096173 -63099259 + (TTTTTG)n Simple_repeat Simple_repeat 5 46 0 1 1608 214 162 0 26 chr1 134101861 134101899 -63093533 + CT-rich Low_complexity Low_complexity 4 40 0 1 1608 236 214 108 44 chr1 134103492 134103648 -63091784 + MIRc SINE MIR 13 180 -96 1 1608 284 278 0 0 chr1 134105529 134105601 -63089831 - ID2 SINE ID -9 74 3 1 1608 375 258 41 16 chr1 134106765 134106887 -63088545 - B1F SINE Alu -8 141 17 1 1608 207 325 13 0 chr1 134107277 134107354 -63088078 - L2c LINE L2 -217 3170 3093 1 1608 806 216 28 38 chr1 134107599 134107811 -63087621 + B3 SINE B2 2 211 -5 1 1608 450 198 20 10 chr1 134108706 134108808 -63086624 + PB1D10 SINE Alu 15 117 0 1 1608 920 119 35 0 chr1 134110438 134110525 -63084907 + B1_Mus1 SINE Alu 1 87 -61 1 1608 843 10 0 0 chr1 134110525 134110621 -63084811 + (GA)n Simple_repeat Simple_repeat 2 97 0 2 1608 920 119 35 0 chr1 134110621 134110676 -63084756 + B1_Mus1 SINE Alu 88 146 -2 1 1608 1239 66 0 0 chr1 134110756 134110922 -63084510 + B2_Mm2 SINE B2 2 167 -28 2 1608 1473 56 11 0 chr1 134110924 134111189 -63084243 + (GGAGAA)n Simple_repeat Simple_repeat 1 267 0 2 1608 326 129 5 0 chr1 134111189 134111245 -63084187 + B1F SINE Alu 89 148 -1 2 1608 1239 27 0 0 chr1 134111248 134111395 -63084037 + B1_Mm SINE Alu 1 147 0 2 1608 214 26 79 0 chr1 134111395 134111433 -63083999 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 2 1608 37 0 0 0 chr1 134111584 134111621 -63083811 + AT_rich Low_complexity Low_complexity 1 37 0 2 1608 604 246 113 11 chr1 134111638 134111815 -63083617 + B4A SINE B4 36 230 -62 2 1608 527 84 0 0 chr1 134111810 134111881 -63083551 + B1_Mur4 SINE Alu 66 136 -14 2 1608 447 265 72 91 chr1 134111894 134112102 -63083330 + B3 SINE B2 6 209 -7 2 1608 189 107 0 0 chr1 134112612 134112640 -63082792 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 2 1608 844 108 0 14 chr1 134114431 134114572 -63080860 + (TCCC)n Simple_repeat Simple_repeat 4 142 0 2 1608 560 272 91 10 chr1 134114578 134114746 -63080686 - B3 SINE B2 0 193 1 2 1608 3262 251 128 22 chr1 134114982 134115543 -63079889 + Lx8 LINE L1 6309 6914 -559 2 1608 1632 107 89 83 chr1 134115543 134115705 -63079727 - ORR1A4 LTR MaLR 0 329 156 2 1608 396 0 0 0 chr1 134115705 134115749 -63079683 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1608 1183 43 0 0 chr1 134115749 134115887 -63079545 - B1_Mus1 SINE Alu -10 138 1 2 1608 1632 107 89 83 chr1 134115887 134116050 -63079382 - ORR1A4 LTR MaLR -174 155 2 2 1608 3262 251 128 22 chr1 134116050 134116508 -63078924 + Lx8 LINE L1 6915 7435 -38 2 1608 423 157 0 0 chr1 134116509 134116618 -63078814 + GA-rich Low_complexity Low_complexity 1 109 0 2 1608 549 14 0 0 chr1 134116711 134116780 -63078652 - L1Md_F2 LINE L1 -12 6570 6502 2 1608 35 0 0 0 chr1 134116790 134116825 -63078607 + AT_rich Low_complexity Low_complexity 1 35 0 2 1608 583 245 6 32 chr1 134116840 134116996 -63078436 - B3A SINE B2 -46 152 1 2 1608 186 43 0 0 chr1 134117082 134117105 -63078327 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 1608 180 194 111 16 chr1 134117597 134117660 -63077772 - L2 LINE L2 -505 2914 2846 2 1608 197 373 0 29 chr1 134117848 134117953 -63077479 + L2 LINE L2 2868 2969 -450 2 1608 243 0 0 0 chr1 134118111 134118138 -63077294 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1608 312 27 0 0 chr1 134119113 134119150 -63076282 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1608 233 190 0 108 chr1 134120113 134120178 -63075254 - RSINE1 SINE B4 0 165 108 2 1608 8683 28 3 4 chr1 134120180 134121262 -63074170 - L1Md_F3 LINE L1 0 6584 5504 2 1608 482 257 47 9 chr1 134121262 134121368 -63074064 - RSINE1 SINE B4 -49 116 7 2 1608 211 325 0 135 chr1 134121288 134121384 -63074048 - B3 SINE B2 -131 85 3 2 1608 525 16 0 0 chr1 134121390 134121452 -63073980 + (TTTTC)n Simple_repeat Simple_repeat 2 63 0 2 1608 1218 79 6 6 chr1 134121464 134121630 -63073802 - B2_Mm2 SINE B2 -3 192 27 2 1608 26 30 0 0 chr1 134121630 134121663 -63073769 + AT_rich Low_complexity Low_complexity 1 33 0 2 1608 1138 70 0 0 chr1 134121663 134121806 -63073626 + B2_Mm1a SINE B2 2 144 -49 2 1608 1225 97 40 0 chr1 134121812 134121987 -63073445 - B2_Mm1t SINE B2 -7 186 5 2 1608 826 159 58 0 chr1 134121997 134122135 -63073297 - B1_Mur4 SINE Alu 0 150 5 2 1608 1263 89 0 0 chr1 134122161 134122340 -63073092 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1608 1163 62 0 14 chr1 134122344 134122492 -63072940 - B1_Mus1 SINE Alu 0 148 3 2 1608 279 0 0 0 chr1 134123146 134123177 -63072255 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1608 783 0 0 0 chr1 134123258 134123345 -63072087 + (GGA)n Simple_repeat Simple_repeat 1 87 0 2 1608 403 297 11 0 chr1 134123915 134124006 -63071426 + RSINE1 SINE B4 74 165 0 2 1608 1495 6 57 17 chr1 134124042 134124218 -63071214 - B2_Mm1a SINE B2 -9 184 2 2 1608 217 132 0 0 chr1 134124240 134124278 -63071154 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1608 405 0 0 0 chr1 134124913 134124958 -63070474 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1608 241 268 18 0 chr1 134126546 134126602 -63068830 + ID4 SINE ID 2 58 -25 2 1608 215 328 31 0 chr1 134126641 134126705 -63068727 - MIRb SINE MIR -174 94 29 2 1608 1066 86 0 0 chr1 134126776 134126915 -63068517 + B1_Mus1 SINE Alu 2 140 -8 2 1608 333 62 0 0 chr1 134126915 134126963 -63068469 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1608 585 269 0 15 chr1 134127839 134127975 -63067457 - B1F1 SINE Alu -12 137 4 2 1608 349 287 17 17 chr1 134128012 134128129 -63067303 + PB1D10 SINE Alu 1 117 0 2 1608 508 272 1 5 chr1 134129953 134130071 -63065361 + PB1D10 SINE Alu 3 115 -2 2 1608 231 269 60 0 chr1 134130081 134130148 -63065284 + ID4 SINE ID 1 71 -12 2 1608 239 0 32 0 chr1 134130202 134130233 -63065199 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1608 282 325 59 8 chr1 134131724 134131842 -63063590 - MER94 DNA AcHobo -7 127 4 2 1608 252 137 0 0 chr1 134131968 134132019 -63063413 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1608 258 319 77 36 chr1 134132149 134132372 -63063060 + MIR SINE MIR 18 257 -11 2 1608 419 296 0 9 chr1 134132647 134132756 -63062676 + PB1D10 SINE Alu 1 108 -9 2 1608 198 0 0 0 chr1 134132756 134132778 -63062654 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1608 1428 55 28 0 chr1 134132852 134133034 -63062398 - B2_Mm2 SINE B2 -8 187 1 2 1608 234 330 22 50 chr1 134133277 134133459 -63061973 - L1MD3 LINE L1 -172 7823 7647 2 1608 332 171 0 67 chr1 134133490 134133565 -63061867 - HAL1-3A_ME LINE L1 -815 2043 1974 2 1608 662 297 69 0 chr1 134133623 134133825 -63061607 - MER21B LTR ERV1 -145 718 503 2 1608 646 150 91 8 chr1 134133827 134133948 -63061484 + MTC LTR MaLR 3 133 -288 2 1608 435 220 9 60 chr1 134134506 134134622 -63060810 + PB1D9 SINE Alu 1 110 -10 2 1608 687 146 89 0 chr1 134134670 134134793 -63060639 - B1_Mur3 SINE Alu 0 149 16 2 1608 288 0 0 0 chr1 134134801 134134833 -63060599 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1608 216 86 0 0 chr1 134134834 134134869 -63060563 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1608 406 282 64 18 chr1 134134884 134135160 -63060272 - L1M5 LINE L1 -700 5473 5191 2 1608 920 238 37 63 chr1 134135268 134135543 -63059889 - B4A SINE B4 0 292 22 2 1608 1715 172 90 6 chr1 134135543 134135762 -63059670 + ORR1D1 LTR MaLR 1 243 -131 2 1608 714 109 0 0 chr1 134135762 134135881 -63059551 + (CCTG)n Simple_repeat Simple_repeat 4 122 0 2 1608 1715 172 90 6 chr1 134135881 134136006 -63059426 + ORR1D1 LTR MaLR 244 374 0 2 1608 920 238 37 63 chr1 134136006 134136030 -63059402 - B4A SINE B4 -271 21 1 2 1608 986 308 82 14 chr1 134136241 134136732 -63058700 - L1MB5 LINE L1 -181 6384 5861 2 1608 574 180 26 35 chr1 134136894 134137009 -63058423 - PB1D7 SINE Alu -1 119 6 2 1608 270 81 0 0 chr1 134137039 134137076 -63058356 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 2 1608 332 273 211 16 chr1 134137076 134137190 -63058242 - B1F2 SINE Alu -9 140 1 2 1608 373 270 169 0 chr1 134137190 134137230 -63058202 - ID SINE ID -142 82 28 2 1608 338 250 21 133 chr1 134137245 134137527 -63057905 - L1MB5 LINE L1 -753 5821 5556 2 1608 458 294 93 26 chr1 134137546 134137815 -63057617 - L1MB5 LINE L1 -4943 1690 1404 2 1608 237 222 0 0 chr1 134138196 134138241 -63057191 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1608 271 274 0 0 chr1 134138301 134138363 -63057069 - L1MB5 LINE L1 -6251 382 321 2 1608 1658 36 0 0 chr1 134138723 134138915 -63056517 - B2_Mm1a SINE B2 0 193 2 2 1608 235 339 45 0 chr1 134139283 134139395 -63056037 - PB1D10 SINE Alu 0 117 1 2 1608 601 268 14 21 chr1 134139404 134139545 -63055887 - ID_B1 SINE B4 -3 221 82 2 1608 550 252 82 39 chr1 134139652 134139858 -63055574 - B4A SINE B4 -21 271 57 2 1608 312 272 65 0 chr1 134139861 134139953 -63055479 - B1F2 SINE Alu -34 115 18 2 1608 635 167 9 27 chr1 134140094 134140205 -63055227 - B1_Mur2 SINE Alu -1 148 40 2 1608 379 258 76 159 chr1 134140672 134140829 -63054603 + B4 SINE B4 80 223 -69 2 1608 721 179 44 22 chr1 134140698 134140835 -63054597 + B1_Mur2 SINE Alu 10 149 0 2 1608 335 282 142 25 chr1 134140881 134141001 -63054431 - B3A SINE B2 -38 160 27 2 1608 4387 178 128 18 chr1 134141001 134141906 -63053526 - RMER1B Other Other -17 1049 45 2 1608 222 308 66 20 chr1 134142534 134142658 -63052774 + MIRc SINE MIR 65 187 -75 2 1608 235 301 78 35 chr1 134142755 134142896 -63052536 + MIR SINE MIR 23 169 -93 2 1608 463 196 42 101 chr1 134143138 134143257 -63052175 + PB1D9 SINE Alu 9 120 0 2 1608 224 341 3 25 chr1 134143255 134143367 -63052065 - B1F1 SINE Alu -13 107 3 2 1608 5387 58 1 52 chr1 134143394 134143830 -63051602 + RLTR13D5 LTR ERVK 1 427 -596 2 1608 1373 89 5 0 chr1 134143830 134144021 -63051411 - B2_Mm1t SINE B2 -1 192 1 2 1608 5387 58 1 52 chr1 134144021 134144115 -63051317 + RLTR13D5 LTR ERVK 428 511 -512 2 1608 1486 44 50 0 chr1 134144115 134144297 -63051135 + B2_Mm1a SINE B2 2 192 -1 2 1608 5387 58 1 52 chr1 134144297 134144480 -63050952 + RLTR13D5 LTR ERVK 512 684 -339 2 1608 3132 42 42 0 chr1 134144480 134144860 -63050572 + MTA_Mm LTR MaLR 1 396 0 2 1608 5387 58 1 52 chr1 134144860 134144878 -63050554 + RLTR13D5 LTR ERVK 685 697 -326 2 1608 437 234 191 16 chr1 134144878 134145004 -63050428 + B1_Mur1 SINE Alu 2 149 0 2 1608 1476 79 0 5 chr1 134145165 134145356 -63050076 + B2_Mm2 SINE B2 2 191 -4 2 1608 703 126 134 0 chr1 134145376 134145495 -63049937 + B1_Mus1 SINE Alu 5 139 -9 2 1608 588 29 0 0 chr1 134145496 134145566 -63049866 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1608 387 157 0 0 chr1 134145862 134145932 -63049500 + (TATG)n Simple_repeat Simple_repeat 3 72 0 2 1608 689 143 0 105 chr1 134145956 134146089 -63049343 + B1F2 SINE Alu 31 149 0 2 1608 379 272 35 17 chr1 134146103 134146219 -63049213 + PB1 SINE Alu 7 124 -3 3 1608 809 194 73 0 chr1 134147108 134147259 -63048173 + B3 SINE B2 6 166 -50 3 1608 387 0 0 0 chr1 134147259 134147302 -63048130 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1608 652 241 43 65 chr1 134147302 134147336 -63048096 + B2_Mm2 SINE B2 150 187 -8 3 1608 243 333 39 29 chr1 134147497 134147599 -63047833 + MIR SINE MIR 41 143 -119 3 1608 838 172 14 14 chr1 134147696 134147843 -63047589 + B1_Mur4 SINE Alu 4 150 0 3 1608 929 134 69 6 chr1 134147853 134148026 -63047406 + B2_Mm2 SINE B2 3 186 -9 3 1608 3923 49 19 0 chr1 134148046 134148512 -63046920 - MT2C_Mm LTR ERVL 0 475 1 3 1608 1009 48 0 0 chr1 134149238 134149363 -63046069 - B1_Mus1 SINE Alu 0 148 24 3 1608 1416 254 103 61 chr1 134149367 134150068 -63045364 - Lx9 LINE L1 -2 7642 6913 3 1608 750 278 8 87 chr1 134150455 134150707 -63044725 + B4A SINE B4 2 233 -59 3 1608 182 37 0 36 chr1 134150708 134150736 -63044696 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 3 1608 23 33 0 0 chr1 134150894 134150924 -63044508 + AT_rich Low_complexity Low_complexity 1 30 0 3 1608 399 68 0 0 chr1 134150924 134150983 -63044449 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1608 511 233 0 0 chr1 134150993 134151079 -63044353 - B3A SINE B2 -112 86 1 3 1608 456 312 43 37 chr1 134151143 134151306 -63044126 + B3A SINE B2 2 165 -33 3 1608 423 0 0 0 chr1 134151306 134151353 -63044079 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1608 507 112 0 0 chr1 134151353 134151432 -63044000 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1608 306 313 61 96 chr1 134151432 134151465 -63043967 + B2_Mm2 SINE B2 160 191 -4 3 1608 203 88 29 0 chr1 134151597 134151631 -63043801 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 3 1608 237 263 18 0 chr1 134152093 134152150 -63043282 - ID4 SINE ID -25 58 1 3 1608 481 217 9 54 chr1 134152649 134152761 -63042671 - ID_B1 SINE B4 0 224 118 3 1608 271 316 86 50 chr1 134154104 134154244 -63041188 - RMER15 LTR ERVL -14 561 417 3 1608 861 250 24 5 chr1 134154913 134155118 -63040314 - B3 SINE B2 -7 209 1 3 1608 420 20 0 0 chr1 134155278 134155327 -63040105 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1608 340 228 139 65 chr1 134155335 134155424 -63040008 + B1F SINE Alu 34 137 -12 3 1608 1818 180 123 3 chr1 134155424 134155798 -63039634 - MTD LTR MaLR 0 419 1 3 1608 340 228 139 65 chr1 134155798 134155816 -63039616 + B1F SINE Alu 138 149 0 3 1608 512 309 167 53 chr1 134157012 134157291 -63038141 - RMER15 LTR ERVL -52 523 186 3 1608 1023 129 0 13 chr1 134157291 134157440 -63037992 - B1_Mus1 SINE Alu -1 147 1 3 1608 512 309 167 53 chr1 134157440 134157628 -63037804 - RMER15 LTR ERVL -390 185 4 3 1608 1154 48 14 0 chr1 134158125 134158270 -63037162 + B1_Mm SINE Alu 1 147 0 3 1608 774 246 48 16 chr1 134158388 134158574 -63036858 + B3 SINE B2 1 192 -24 3 1608 1012 201 35 20 chr1 134158690 134158893 -63036539 + B3 SINE B2 8 213 -3 3 1608 874 179 14 0 chr1 134158908 134159053 -63036379 + B1_Mus2 SINE Alu 1 147 0 3 1608 280 164 30 0 chr1 134159054 134159121 -63036311 + GA-rich Low_complexity Low_complexity 2 70 0 3 1608 237 159 0 0 chr1 134159403 134159447 -63035985 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1608 222 37 0 0 chr1 134159556 134159583 -63035849 + (CAGCT)n Simple_repeat Simple_repeat 1 27 0 3 1608 3747 64 102 27 chr1 134159703 134160230 -63035202 - RMER2 LTR ERV1 0 567 1 3 1608 232 220 0 78 chr1 134160230 134160294 -63035138 + B1_Mur2 SINE Alu 91 149 0 3 1608 472 282 132 79 chr1 134160571 134160875 -63034557 + MER21B LTR ERV1 544 863 0 3 1608 1229 48 0 7 chr1 134161096 134161244 -63034188 - B1_Mm SINE Alu 0 147 1 3 1608 246 302 198 10 chr1 134161244 134161451 -63033981 - L2c LINE L2 -73 3314 3069 3 1608 226 274 96 0 chr1 134161693 134161766 -63033666 + PB1D7 SINE Alu 29 108 -12 3 1608 2004 126 0 133 chr1 134162201 134162291 -63033141 + ORR1A3 LTR MaLR 1 59 -267 3 1608 3171 60 179 2 chr1 134162291 134162726 -63032706 + RLTR1B LTR ERV1 1 512 0 3 1608 2004 126 0 133 chr1 134162726 134163011 -63032421 + ORR1A3 LTR MaLR 60 326 0 3 1608 1691 137 255 106 chr1 134163773 134164255 -63031177 + RMER4B LTR ERVK 32 585 0 3 1608 298 250 12 36 chr1 134165171 134165254 -63030178 + ID4_ SINE ID 3 83 0 3 1608 1065 269 18 33 chr1 134165373 134165646 -63029786 + B4A SINE B4 24 292 0 3 1608 341 231 37 28 chr1 134166588 134166695 -63028737 + L1MB3 LINE L1 5850 5957 -226 3 1608 315 0 0 0 chr1 134166697 134166732 -63028700 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1608 249 330 44 126 chr1 134166807 134166888 -63028544 + ID_B1 SINE B4 78 146 -78 3 1608 1212 80 18 142 chr1 134166888 134167106 -63028326 + B2_Mm2 SINE B2 1 191 -4 3 1608 223 330 44 126 chr1 134167106 134167159 -63028273 + ID_B1 SINE B4 147 201 -23 3 1608 1289 84 16 5 chr1 134167616 134167807 -63027625 - B2_Mm1a SINE B2 0 193 1 3 1608 778 164 0 28 chr1 134167860 134168004 -63027428 - B1_Mur4 SINE Alu -5 145 6 3 1608 286 250 41 129 chr1 134167861 134168031 -63027401 - B4 SINE B4 -72 220 66 3 1608 1821 120 187 3 chr1 134168469 134168779 -63026653 - ORR1B2 LTR MaLR 0 367 1 3 1608 576 320 73 76 chr1 134169036 134169337 -63026095 - ORR1E LTR MaLR -8 351 52 3 1608 222 191 0 0 chr1 134169342 134169389 -63026043 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1608 302 24 0 45 chr1 134169619 134169663 -63025769 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 3 1608 461 306 38 13 chr1 134170200 134170359 -63025073 + RSINE1 SINE B4 3 165 0 3 1608 502 225 8 0 chr1 134170359 134170631 -63024801 + (CA)n Simple_repeat Simple_repeat 1 274 0 3 1608 1286 201 91 50 chr1 134171663 134172047 -63023385 - RMER16 LTR ERVK 0 533 3 3 1608 1282 114 0 5 chr1 134172306 134172500 -63022932 - B2_Mm2 SINE B2 0 195 3 3 1608 295 316 84 0 chr1 134172655 134172750 -63022682 + PB1D7 SINE Alu 13 115 -5 3 1608 463 277 28 14 chr1 134172776 134172919 -63022513 + B1F SINE Alu 2 146 -3 3 1608 839 168 109 47 chr1 134173019 134173212 -63022220 + B3 SINE B2 5 209 -7 3 1608 279 350 43 12 chr1 134173814 134173976 -63021456 + MER5B DNA MER1_type 1 167 -11 3 1608 227 293 91 35 chr1 134174074 134174194 -63021238 + MIRc SINE MIR 44 169 -99 3 1608 414 0 0 0 chr1 134174285 134174331 -63021101 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1608 880 201 20 30 chr1 134174332 134174532 -63020900 - B3 SINE B2 -17 199 2 3 1608 243 130 17 85 chr1 134174534 134174593 -63020839 - PB1D9 SINE Alu -26 94 40 3 1608 1773 117 60 117 chr1 134174649 134174729 -63020703 - ORR1A2 LTR MaLR 0 346 308 3 1608 1115 51 0 0 chr1 134174729 134174867 -63020565 - B1_Mus1 SINE Alu -9 139 2 3 1608 1991 94 7 0 chr1 134174867 134175153 -63020279 - ORR1A2 LTR MaLR -39 288 1 3 1608 223 355 83 18 chr1 134175222 134175331 -63020101 + PB1D10 SINE Alu 2 117 0 3 1608 264 252 95 19 chr1 134175379 134175484 -63019948 + RMER1B Other Other 40 152 -914 3 1608 495 223 10 139 chr1 134175693 134175901 -63019531 + RMER1C Other Other 493 673 -669 3 1608 453 290 20 14 chr1 134176469 134176616 -63018816 - MIRb SINE MIR -8 260 113 3 1608 829 153 0 7 chr1 134176715 134176853 -63018579 - B1_Mur1 SINE Alu -11 138 2 3 1608 283 306 30 10 chr1 134176873 134176972 -63018460 - B3A SINE B2 -94 104 4 3 1608 1634 153 136 27 chr1 134177053 134177422 -63018010 - RLTR9E LTR ERVK 0 409 1 3 1608 235 435 11 11 chr1 134177434 134177620 -63017812 + MIRb SINE MIR 41 226 -42 3 1608 260 232 0 28 chr1 134177756 134177827 -63017605 + MER53 DNA hAT 124 192 -1 3 1608 415 81 22 34 chr1 134178897 134178986 -63016446 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 1608 297 279 8 59 chr1 134178990 134179109 -63016323 - B3A SINE B2 -13 203 99 3 1608 295 266 25 0 chr1 134180291 134180370 -63015062 + ID4_ SINE ID 1 81 -2 3 1608 267 254 0 43 chr1 134180310 134180380 -63015052 + ID SINE ID 23 89 -135 3 1608 710 150 55 0 chr1 134182228 134182355 -63013077 + B1_Mur4 SINE Alu 1 134 -16 3 1608 441 0 0 0 chr1 134182355 134182404 -63013028 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1608 432 0 0 0 chr1 134182407 134182455 -63012977 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1608 368 312 83 7 chr1 134183623 134183768 -63011664 + MIR SINE MIR 15 170 -92 3 1608 23 33 0 0 chr1 134183864 134183894 -63011538 + AT_rich Low_complexity Low_complexity 1 30 0 3 1608 203 324 90 37 chr1 134184239 134184428 -63011004 + MIRc SINE MIR 2 200 -68 3 1608 232 376 30 0 chr1 134184619 134184720 -63010712 - L2b LINE L2 0 3375 3272 3 1608 180 0 0 0 chr1 134185405 134185425 -63010007 + (CG)n Simple_repeat Simple_repeat 2 21 0 3 1608 360 0 0 0 chr1 134185425 134185464 -63009968 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1608 466 269 0 40 chr1 134185476 134185600 -63009832 - RSINE1 SINE B4 -36 129 11 3 1608 382 328 117 49 chr1 134185977 134186224 -63009208 - MER58B DNA MER1_type -19 322 59 3 1608 384 252 0 0 chr1 134186984 134187107 -63008325 + (TG)n Simple_repeat Simple_repeat 1 123 0 3 1608 260 271 0 28 chr1 134187116 134187188 -63008244 + (TATG)n Simple_repeat Simple_repeat 4 73 0 3 1608 923 235 14 9 chr1 134187570 134187789 -63007643 - ID_B1 SINE B4 0 224 5 3 1608 640 140 35 33 chr1 134190378 134190860 -63004572 + (TG)n Simple_repeat Simple_repeat 1 483 0 3 1608 4237 135 60 36 chr1 134190863 134191816 -63003616 - RMER17B LTR ERVK 0 958 1 3 1608 256 111 27 40 chr1 134191816 134191891 -63003541 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1608 575 253 89 45 chr1 134191891 134192048 -63003384 - RSINE1 SINE B4 0 165 2 3 1608 1963 178 27 3 chr1 134193108 134193480 -63001952 - RLTR14 LTR ERV1 -1 381 1 4 1608 271 319 0 0 chr1 134193874 134193943 -63001489 + B4 SINE B4 82 150 -142 4 1608 348 185 0 0 chr1 134193893 134193947 -63001485 + B1_Mur4 SINE Alu 17 70 -80 4 1608 282 56 0 0 chr1 134194060 134194096 -63001336 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1608 330 261 150 8 chr1 134194268 134194388 -63001044 + L1MD2 LINE L1 6214 6350 -9 4 1608 186 103 0 0 chr1 134194458 134194487 -63000945 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1608 258 56 0 0 chr1 134194491 134194527 -63000905 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1608 326 235 12 12 chr1 134197219 134197301 -62998131 + PB1D10 SINE Alu 1 82 -35 4 1608 707 169 80 0 chr1 134197302 134197438 -62997994 + B1_Mus1 SINE Alu 1 147 -1 4 1608 305 327 142 77 chr1 134197438 134197471 -62997961 + B4 SINE B4 86 265 -27 4 1608 24 32 0 0 chr1 134197528 134197559 -62997873 + AT_rich Low_complexity Low_complexity 1 31 0 4 1608 274 304 68 22 chr1 134197665 134197787 -62997645 - MIR SINE MIR -64 204 72 4 1608 23 0 0 0 chr1 134199452 134199475 -62995957 + AT_rich Low_complexity Low_complexity 1 23 0 4 1608 285 257 14 0 chr1 134202598 134202672 -62992760 + ID4 SINE ID 9 83 0 4 1608 645 203 78 0 chr1 134203670 134203798 -62991634 + B1_Mur2 SINE Alu 1 138 -11 4 1608 761 182 0 75 chr1 134204904 134205064 -62990368 - B1_Mur1 SINE Alu -1 148 1 4 1608 423 0 0 0 chr1 134205584 134205631 -62989801 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1608 258 130 0 0 chr1 134206709 134206730 -62988702 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 4 1608 1328 67 0 6 chr1 134206730 134206911 -62988521 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1608 258 130 0 0 chr1 134206911 134206935 -62988497 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 4 1608 1086 115 102 11 chr1 134206935 134206949 -62988483 - B2_Mm1a SINE B2 -1 192 180 4 1608 920 77 8 0 chr1 134206949 134207079 -62988353 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 4 1608 1086 115 102 11 chr1 134207079 134207240 -62988192 - B2_Mm1a SINE B2 -14 179 1 4 1608 267 263 15 39 chr1 134209000 134209104 -62986328 + MIR SINE MIR 81 193 -75 4 1608 1242 176 5 5 chr1 134210285 134210507 -62984925 + URR1A DNA MER1_type 5 226 0 4 1608 885 252 5 0 chr1 134210752 134210954 -62984478 - B3 SINE B2 -6 210 8 4 1608 268 297 143 8 chr1 134213524 134213643 -62981789 + MIRc SINE MIR 89 223 -45 4 1608 282 106 0 0 chr1 134214403 134214450 -62980982 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1608 317 218 103 0 chr1 134215301 134215388 -62980044 - MIR SINE MIR -61 147 52 4 1608 251 236 160 0 chr1 134215654 134215760 -62979672 + MIRb SINE MIR 114 236 -32 4 1608 1389 74 21 0 chr1 134216746 134216936 -62978496 - B2_Mm2 SINE B2 0 195 2 4 1608 952 243 10 24 chr1 134217376 134217583 -62977849 + B3 SINE B2 13 216 0 4 1609 664 218 94 20 chr1 134217817 134218018 -62977414 + B3 SINE B2 1 216 0 4 1609 257 331 126 7 chr1 134219892 134220035 -62975397 - MIR3 SINE MIR -43 165 6 4 1609 212 0 36 0 chr1 134220258 134220286 -62975146 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 4 1609 826 265 45 38 chr1 134220325 134220374 -62975058 - L1MB4 LINE L1 -75 6105 6062 4 1609 757 192 151 16 chr1 134220374 134220559 -62974873 - B3 SINE B2 -5 211 2 4 1609 826 268 55 36 chr1 134220559 134220867 -62974565 - L1MB4 LINE L1 -121 6062 5726 4 1609 197 401 39 8 chr1 134220933 134221061 -62974371 + MIRc SINE MIR 65 196 -72 4 1609 228 316 31 86 chr1 134221065 134221193 -62974239 - L2b LINE L2 0 3375 3255 4 1609 235 354 0 29 chr1 134221759 134221861 -62973571 + PB1D10 SINE Alu 19 117 0 4 1609 194 116 0 23 chr1 134221883 134221927 -62973505 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1609 240 308 25 37 chr1 134222090 134222171 -62973261 - ID2 SINE ID -2 81 2 4 1609 306 0 0 0 chr1 134222954 134222988 -62972444 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1609 214 355 62 45 chr1 134223745 134223922 -62971510 - MIRb SINE MIR -2 266 87 4 1609 325 231 173 0 chr1 134224824 134224928 -62970504 - MIR3 SINE MIR -34 174 53 4 1609 1130 105 6 0 chr1 134225802 134225974 -62969458 + (TTCTC)n Simple_repeat Simple_repeat 1 173 0 4 1609 1326 78 0 0 chr1 134225975 134226155 -62969277 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1609 185 100 0 48 chr1 134229549 134229591 -62965841 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1609 207 0 0 0 chr1 134229810 134229833 -62965599 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1609 249 277 92 0 chr1 134231100 134231165 -62964267 - ID4 SINE ID -1 82 12 4 1609 243 277 15 0 chr1 134232774 134232839 -62962593 + ID SINE ID 1 66 -158 4 1609 217 357 0 0 chr1 134232839 134232858 -62962574 + BC1_Mm scRNA scRNA 1 84 -68 4 1609 238 316 0 48 chr1 134233076 134233179 -62962253 - L2a LINE L2 -47 3379 3282 4 1609 352 301 190 0 chr1 134233150 134233313 -62962119 - L2a LINE L2 -426 2993 2800 4 1609 664 220 23 8 chr1 134233322 134233455 -62961977 + RSINE1 SINE B4 5 139 -26 4 1609 402 21 0 0 chr1 134233455 134233502 -62961930 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1609 226 342 30 47 chr1 134233518 134233687 -62961745 - L2a LINE L2 -641 2778 2613 4 1609 224 170 19 0 chr1 134234856 134234909 -62960523 + C-rich Low_complexity Low_complexity 2 55 0 4 1609 220 277 46 0 chr1 134235667 134235732 -62959700 + MIRc SINE MIR 163 230 -38 4 1609 835 212 0 0 chr1 134236851 134236997 -62958435 + B1_Mur4 SINE Alu 5 150 0 4 1609 385 283 61 9 chr1 134237015 134237129 -62958303 + PB1D7 SINE Alu 1 120 0 4 1609 902 198 17 22 chr1 134237173 134237342 -62958090 + B3 SINE B2 1 172 -44 4 1609 369 0 0 0 chr1 134237342 134237383 -62958049 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1609 687 65 0 0 chr1 134237383 134237475 -62957957 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1609 432 0 0 0 chr1 134237475 134237523 -62957909 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1609 802 260 101 16 chr1 134237566 134237824 -62957608 - B4A SINE B4 -8 284 5 4 1609 293 305 10 10 chr1 134237918 134238014 -62957418 - MER53 DNA hAT -97 96 1 4 1609 952 127 0 26 chr1 134238131 134238285 -62957147 + B1_Mur4 SINE Alu 1 150 0 4 1609 405 279 111 76 chr1 134239038 134239209 -62956223 - ID_B1 SINE B4 0 224 48 4 1609 906 180 0 0 chr1 134239558 134239697 -62955735 + B1_Mur3 SINE Alu 1 139 -10 4 1609 495 0 0 0 chr1 134239697 134239752 -62955680 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1609 808 178 8 0 chr1 134239814 134239943 -62955489 - B1_Mur3 SINE Alu -18 131 2 4 1609 366 61 0 0 chr1 134240166 134240215 -62955217 + (CAGA)n Simple_repeat Simple_repeat 3 51 0 4 1609 1140 90 0 0 chr1 134240481 134240782 -62954650 + (TG)n Simple_repeat Simple_repeat 1 301 0 4 1609 182 271 17 17 chr1 134241714 134241774 -62953658 + MIR SINE MIR 68 127 -81 4 1609 314 250 79 22 chr1 134243726 134243864 -62951568 + MIRb SINE MIR 35 171 -91 4 1609 324 307 31 4 chr1 134243887 134244083 -62951349 + MER34A LTR ERV1 1 246 -296 4 1609 335 350 50 28 chr1 134244099 134244240 -62951192 + B1F2 SINE Alu 3 146 -3 4 1609 258 248 142 47 chr1 134244318 134244445 -62950987 + MER34A LTR ERV1 382 520 -22 4 1609 448 287 76 83 chr1 134244554 134244574 -62950858 - ID_B1 SINE B4 -50 242 175 4 1609 782 160 0 0 chr1 134244574 134244699 -62950733 - B1_Mus2 SINE Alu -10 137 13 4 1609 448 287 76 83 chr1 134244699 134244731 -62950701 - ID_B1 SINE B4 -50 174 54 4 1609 514 217 16 50 chr1 134245471 134245592 -62949840 + PB1D9 SINE Alu 4 120 0 4 1609 233 151 19 0 chr1 134245631 134245684 -62949748 + CT-rich Low_complexity Low_complexity 5 58 0 4 1609 499 237 8 26 chr1 134245684 134245801 -62949631 - PB1D10 SINE Alu -1 116 2 4 1609 41 87 0 0 chr1 134246462 134246566 -62948866 + AT_rich Low_complexity Low_complexity 1 104 0 4 1609 842 185 101 6 chr1 134246614 134246793 -62948639 - B3 SINE B2 -19 197 2 4 1609 190 297 47 0 chr1 134247186 134247250 -62948182 + MIR3 SINE MIR 109 175 -33 4 1609 840 221 28 46 chr1 134247707 134247925 -62947507 + B3 SINE B2 2 215 -1 4 1609 774 313 49 14 chr1 134247960 134248307 -62947125 + L1_Mur3 LINE L1 5142 5500 -380 4 1609 767 237 79 16 chr1 134248615 134248804 -62946628 - B3 SINE B2 -15 201 1 4 1609 898 221 29 29 chr1 134248804 134249014 -62946418 - MTD LTR MaLR -209 210 1 4 1609 414 360 6 22 chr1 134249150 134249332 -62946100 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1609 201 194 0 0 chr1 134252200 134252236 -62943196 - MIRm SINE MIR -125 151 116 4 1609 234 0 0 0 chr1 134252287 134252313 -62943119 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1609 435 19 0 0 chr1 134252722 134252774 -62942658 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1609 24 32 0 0 chr1 134253103 134253134 -62942298 + AT_rich Low_complexity Low_complexity 1 31 0 4 1609 240 35 0 0 chr1 134253338 134253367 -62942065 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 1609 1192 75 0 0 chr1 134254557 134254704 -62940728 - B1_Mm SINE Alu 0 147 1 4 1609 324 0 0 0 chr1 134254721 134254757 -62940675 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1609 302 317 69 10 chr1 134255753 134255961 -62939471 - MIR SINE MIR -23 245 29 4 1609 847 159 23 0 chr1 134256298 134256430 -62939002 - B1_Mur1 SINE Alu -13 136 2 4 1609 1299 254 106 10 chr1 134259465 134259862 -62935570 + Lx8 LINE L1 6937 7371 -102 4 1609 315 313 15 25 chr1 134259852 134259984 -62935448 + L1MB3 LINE L1 5515 5645 -534 4 1609 1164 228 104 146 chr1 134259989 134260262 -62935170 - MTD LTR MaLR 0 419 110 4 1609 884 163 0 13 chr1 134260262 134260411 -62935021 + B1_Mus1 SINE Alu 2 148 0 5 1609 1164 228 104 146 chr1 134260411 134260569 -62934863 - MTD LTR MaLR -310 109 6 4 1609 586 338 153 15 chr1 134260574 134260965 -62934467 + L1MB3 LINE L1 5646 6090 -93 4 1609 978 56 0 0 chr1 134262113 134262239 -62933193 + B1_Mus1 SINE Alu 15 140 -8 5 1609 867 102 0 15 chr1 134265090 134265220 -62930212 - B1_Mus1 SINE Alu -19 129 2 5 1609 762 228 54 0 chr1 134265257 134265424 -62930008 - B3A SINE B2 -22 176 1 5 1609 503 94 0 0 chr1 134265451 134265536 -62929896 - Lx9 LINE L1 -1 7643 7559 5 1609 22 0 0 0 chr1 134265944 134265966 -62929466 + AT_rich Low_complexity Low_complexity 1 22 0 5 1609 1149 66 0 0 chr1 134265969 134266120 -62929312 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 5 1609 442 294 133 47 chr1 134266128 134266278 -62929154 - RSINE1 SINE B4 0 165 3 5 1609 528 16 0 0 chr1 134266810 134266871 -62928561 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1609 299 279 21 31 chr1 134267835 134267931 -62927501 + BC1_Mm scRNA scRNA 2 96 -56 5 1609 205 270 118 26 chr1 134272406 134272482 -62922950 + MIRc SINE MIR 112 194 -74 5 1609 397 200 279 9 chr1 134272536 134272641 -62922791 + B1_Mur2 SINE Alu 1 136 -13 5 1609 720 0 0 0 chr1 134272641 134272721 -62922711 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 5 1609 491 187 0 21 chr1 134272759 134272852 -62922580 + B3 SINE B2 2 92 -124 5 1609 866 309 72 27 chr1 134273429 134273915 -62921517 + L2a LINE L2 2298 2805 -614 5 1609 248 0 31 0 chr1 134274013 134274045 -62921387 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 5 1609 376 362 123 7 chr1 134274069 134274361 -62921071 + L2a LINE L2 3096 3421 -5 5 1609 222 291 60 60 chr1 134274662 134274779 -62920653 + MIRc SINE MIR 2 118 -150 5 1609 333 0 0 0 chr1 134274784 134274821 -62920611 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1609 222 308 62 0 chr1 134275507 134275572 -62919860 - ID4_ SINE ID -13 70 2 5 1609 407 273 35 35 chr1 134275572 134275686 -62919746 - PB1D10 SINE Alu -2 115 2 5 1609 201 74 0 0 chr1 134278972 134278999 -62916433 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 1609 189 0 0 0 chr1 134280024 134280045 -62915387 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1609 195 129 0 0 chr1 134280523 134280554 -62914878 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1609 237 122 0 0 chr1 134283787 134283801 -62911631 + (A)n Simple_repeat Simple_repeat 1 14 0 5 1609 1121 68 7 39 chr1 134283801 134283954 -62911478 + B1_Mus1 SINE Alu 1 148 0 5 1609 237 122 0 0 chr1 134283954 134283988 -62911444 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1609 360 0 0 0 chr1 134285926 134285966 -62909466 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1609 281 100 0 20 chr1 134286427 134286478 -62908954 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1609 207 0 0 0 chr1 134287104 134287127 -62908305 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1609 238 192 40 40 chr1 134288196 134288272 -62907160 + (CCCCG)n Simple_repeat Simple_repeat 4 79 0 5 1609 335 312 135 0 chr1 134289103 134289244 -62906188 + MER5A DNA MER1_type 28 187 -2 5 1609 768 204 43 104 chr1 134289901 134290131 -62905301 + B3 SINE B2 1 216 0 5 1609 329 298 10 41 chr1 134290224 134290322 -62905110 - PB1D10 SINE Alu -4 113 19 5 1609 3884 106 44 35 chr1 134290369 134290965 -62904467 - MT2B LTR ERVL 0 601 1 5 1609 308 296 0 0 chr1 134291051 134291122 -62904310 - ID4_ SINE ID -11 72 2 5 1609 280 212 194 39 chr1 134291125 134291228 -62904204 + MIR SINE MIR 112 230 -32 5 1609 312 27 0 0 chr1 134291307 134291344 -62904088 + (CAAT)n Simple_repeat Simple_repeat 1 37 0 5 1609 2343 134 108 0 chr1 134291729 134292109 -62903323 - Lx4A LINE L1 -3 7055 6635 5 1609 195 315 35 91 chr1 134292158 134292301 -62903131 + MIRb SINE MIR 121 255 -13 5 1609 560 223 0 7 chr1 134292626 134292766 -62902666 + CT-rich Low_complexity Low_complexity 2 140 0 5 1609 969 118 0 46 chr1 134292770 134292921 -62902511 - B1_Mus1 SINE Alu 0 148 5 5 1609 475 168 59 0 chr1 134293041 134293142 -62902290 - ID_B1 SINE B4 0 224 118 5 1609 693 160 119 57 chr1 134294219 134294378 -62901054 + B4A SINE B4 72 240 -52 5 1609 246 137 0 136 chr1 134294467 134294526 -62900906 - ORR1A3 LTR MaLR -21 363 313 5 1609 21 0 0 0 chr1 134294526 134294547 -62900885 + AT_rich Low_complexity Low_complexity 1 21 0 5 1609 547 165 41 10 chr1 134294578 134294676 -62900756 - B3 SINE B2 -113 103 3 5 1609 2059 108 0 8 chr1 134294676 134294962 -62900470 - ORR1A3 LTR MaLR -53 276 1 5 1609 285 226 118 0 chr1 134295074 134295160 -62900272 - MIRb SINE MIR -50 212 121 5 1609 1075 97 15 6 chr1 134295422 134295562 -62899870 + B2_Mm1t SINE B2 5 148 -68 5 1609 266 96 148 37 chr1 134295562 134295616 -62899816 + B1_Mus1 SINE Alu 1 60 -88 5 1609 224 0 0 157 chr1 134295617 134295725 -62899707 + (CAGAG)n Simple_repeat Simple_repeat 5 95 0 5 1609 435 48 95 0 chr1 134295728 134295791 -62899641 + B1_Mus2 SINE Alu 42 110 -37 5 1609 377 82 49 0 chr1 134295765 134295826 -62899606 + B2_Mm1a SINE B2 117 180 -13 5 1609 446 45 327 9 chr1 134295900 134296010 -62899422 + B2_Mm2 SINE B2 47 191 -4 5 1609 393 296 62 62 chr1 134296299 134296461 -62898971 + MER5A1 DNA MER1_type 4 165 -1 5 1609 371 353 76 33 chr1 134297376 134297651 -62897781 + L1ME4a LINE L1 5569 5855 -269 5 1609 3830 155 91 152 chr1 134297671 134298737 -62896695 + RLTR25B LTR ERVK 27 1027 -1 5 1609 791 241 98 0 chr1 134298753 134298927 -62896505 + B3 SINE B2 1 191 -25 5 1609 894 164 7 14 chr1 134298930 134299078 -62896354 + B1_Mur2 SINE Alu 2 148 -1 5 1609 28 0 0 0 chr1 134299126 134299154 -62896278 + AT_rich Low_complexity Low_complexity 1 28 0 5 1609 337 256 299 2 chr1 134299199 134299370 -62896062 + MIRb SINE MIR 13 233 -35 5 1609 1305 117 90 5 chr1 134299744 134299967 -62895465 + Lx3C LINE L1 6724 6965 -11 5 1609 266 50 0 24 chr1 134299969 134300010 -62895422 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 1609 253 279 0 0 chr1 134300319 134300380 -62895052 + B1F SINE Alu 89 149 0 5 1609 1886 210 136 46 chr1 134300389 134301022 -62894410 + RMER6C LTR ERVK 1 690 0 5 1609 218 32 32 0 chr1 134301039 134301070 -62894362 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 5 1609 2308 82 24 62 chr1 134301155 134301494 -62893938 - ORR1A3 LTR MaLR 0 326 1 5 1609 991 268 154 16 chr1 134301516 134301835 -62893597 - ORR1D2 LTR MaLR 0 370 8 5 1609 527 253 88 82 chr1 134301896 134302090 -62893342 - B3A SINE B2 0 198 4 5 1609 2239 59 7 10 chr1 134302213 134302503 -62892929 - L1_Mus1 LINE L1 0 6567 6279 5 1609 1393 83 15 15 chr1 134303027 134303222 -62892210 + B2_Mm2 SINE B2 1 195 0 5 1609 248 345 46 0 chr1 134303834 134303921 -62891511 - MIRc SINE MIR -141 127 37 5 1609 1340 97 0 26 chr1 134304040 134304231 -62891201 - B2_Mm2 SINE B2 -9 186 1 5 1609 1682 307 127 81 chr1 134304313 134304975 -62890457 - MTE-int LTR MaLR -458 1122 469 5 1609 890 261 23 9 chr1 134304975 134305192 -62890240 - ID_B1 SINE B4 -2 222 3 5 1609 1682 307 127 81 chr1 134305192 134305460 -62889972 - MTE-int LTR MaLR -1112 468 144 5 1609 1545 194 65 54 chr1 134305460 134305689 -62889743 - ORR1D1 LTR MaLR 0 374 154 5 1609 881 91 0 15 chr1 134305689 134305823 -62889609 + (GGGAGA)n Simple_repeat Simple_repeat 1 132 0 5 1609 1545 194 65 54 chr1 134305823 134305963 -62889469 - ORR1D1 LTR MaLR -221 153 1 5 1609 1682 307 127 81 chr1 134305963 134306104 -62889328 - MTE-int LTR MaLR -1437 143 2 5 1609 1017 223 44 0 chr1 134306329 134306535 -62888897 - B3 SINE B2 0 216 2 5 1609 2869 31 142 0 chr1 134306688 134307048 -62888384 + IAPLTR2a LTR ERVK 1 411 0 5 1609 1086 52 81 0 chr1 134307053 134307189 -62888243 + B1_Mm SINE Alu 1 147 0 5 1609 597 342 42 39 chr1 134307228 134307511 -62887921 + MT2A LTR ERVL 134 417 -116 5 1609 288 0 0 0 chr1 134307550 134307582 -62887850 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1609 198 282 37 49 chr1 134307604 134307686 -62887746 - MIRb SINE MIR -8 260 180 5 1609 390 204 0 0 chr1 134307695 134307783 -62887649 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1609 186 350 59 10 chr1 134307783 134307884 -62887548 - MIR SINE MIR -84 178 73 5 1609 2495 141 5 3 chr1 134307901 134308278 -62887154 + ORR1C1 LTR MaLR 1 378 0 5 1609 551 191 63 8 chr1 134308304 134308431 -62887001 + B1_Mur1 SINE Alu 3 136 -13 5 1609 204 40 0 0 chr1 134308466 134308491 -62886941 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1609 768 213 0 0 chr1 134308497 134308633 -62886799 - B1_Mur3 SINE Alu -13 136 1 5 1609 1168 68 0 20 chr1 134308756 134308906 -62886526 + B1_Mm SINE Alu 1 147 0 5 1609 301 304 13 0 chr1 134309045 134309124 -62886308 + MER5A1 DNA MER1_type 1 80 -86 5 1609 229 202 148 25 chr1 134309143 134309224 -62886208 - Tigger5 DNA MER2_type -1956 450 360 5 1609 1093 227 153 38 chr1 134309157 134309477 -62885955 + MTD LTR MaLR 61 417 -2 5 1609 588 270 56 0 chr1 134309505 134309631 -62885801 + RSINE1 SINE B4 2 134 -31 5 1609 682 213 0 0 chr1 134309628 134309750 -62885682 + B3 SINE B2 88 209 -7 5 1609 22 0 0 0 chr1 134309750 134309772 -62885660 + AT_rich Low_complexity Low_complexity 1 22 0 5 1609 493 291 0 0 chr1 134309825 134309942 -62885490 + PB1D10 SINE Alu 1 117 0 5 1609 622 267 60 0 chr1 134309926 134310076 -62885356 + ID_B1 SINE B4 66 224 0 5 1609 353 330 9 9 chr1 134310083 134310199 -62885233 + PB1D10 SINE Alu 1 116 -1 5 1609 339 274 0 14 chr1 134310201 134310275 -62885157 + PB1D10 SINE Alu 2 74 -43 5 1609 337 281 0 0 chr1 134310289 134310371 -62885061 + ID4_ SINE ID 2 83 0 5 1609 209 391 35 0 chr1 134310506 134310593 -62884839 - L2a LINE L2 -12 3414 3325 5 1609 595 300 25 0 chr1 134310907 134311067 -62884365 - RSINE1 SINE B4 0 165 2 5 1609 353 119 0 17 chr1 134311104 134311164 -62884268 - B3 SINE B2 0 216 158 6 1609 772 188 9 154 chr1 134311200 134311420 -62884012 - B3 SINE B2 -28 188 1 6 1609 278 244 0 42 chr1 134311421 134311541 -62883891 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 1609 394 298 96 8 chr1 134311541 134311666 -62883766 - ID_B1 SINE B4 -86 138 3 6 1609 246 226 19 0 chr1 134312047 134312100 -62883332 + CT-rich Low_complexity Low_complexity 1 54 0 6 1609 283 222 34 80 chr1 134312103 134312191 -62883241 - B1F1 SINE Alu -19 130 47 6 1609 647 211 147 66 chr1 134312216 134312375 -62883057 - B3 SINE B2 0 216 41 6 1609 1368 73 0 6 chr1 134312375 134312553 -62882879 - B2_Mm2 SINE B2 -18 177 1 6 1609 647 211 147 66 chr1 134312553 134312591 -62882841 - B3 SINE B2 -176 40 3 6 1609 331 355 0 0 chr1 134312635 134312745 -62882687 - PB1D10 SINE Alu 0 117 8 6 1609 236 382 10 0 chr1 134312657 134312759 -62882673 - ID_B1 SINE B4 -48 176 74 6 1609 724 206 0 29 chr1 134312851 134312991 -62882441 - B1_Mur2 SINE Alu -12 137 2 6 1609 321 135 0 0 chr1 134313547 134313599 -62881833 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 6 1609 270 56 0 0 chr1 134314946 134314982 -62880450 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1609 225 316 13 26 chr1 134315263 134315341 -62880091 + MER5B DNA MER1_type 2 78 -100 6 1609 393 254 208 0 chr1 134315601 134315731 -62879701 + RSINE1 SINE B4 3 159 -6 6 1609 234 0 0 0 chr1 134315745 134315771 -62879661 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1609 956 116 20 0 chr1 134315799 134315945 -62879487 - B1_Mur4 SINE Alu 0 150 2 6 1609 216 0 0 0 chr1 134316171 134316195 -62879237 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1609 255 31 0 0 chr1 134317208 134317240 -62878192 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1609 285 225 180 0 chr1 134317488 134317577 -62877855 + MIR SINE MIR 115 219 -43 6 1609 227 293 219 0 chr1 134317849 134317931 -62877501 - PB1D7 SINE Alu -5 115 16 6 1609 910 158 0 0 chr1 134318465 134318604 -62876828 - B1_Mur2 SINE Alu -7 142 4 6 1609 335 319 47 87 chr1 134318774 134318946 -62876486 + B4A SINE B4 55 219 -73 6 1609 682 158 43 36 chr1 134318818 134318956 -62876476 + B1F SINE Alu 9 147 -2 6 1609 487 277 125 9 chr1 134319664 134319892 -62875540 - Lx8 LINE L1 -206 7438 7061 6 1609 1018 194 40 15 chr1 134319931 134320130 -62875302 + B3 SINE B2 1 204 -12 6 1609 360 321 26 52 chr1 134321037 134321152 -62874280 - PB1 SINE Alu -3 124 13 6 1609 223 338 86 12 chr1 134321101 134321182 -62874250 - ID_B1 SINE B4 -81 143 57 6 1609 832 196 0 20 chr1 134321471 134321622 -62873810 + B1_Mur3 SINE Alu 1 148 -1 6 1609 362 277 40 60 chr1 134321641 134321729 -62873703 + RSINE1 SINE B4 68 154 -11 6 1609 393 22 0 0 chr1 134321729 134321775 -62873657 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1609 362 277 40 60 chr1 134321775 134321786 -62873646 + RSINE1 SINE B4 155 165 0 6 1609 228 184 0 39 chr1 134322667 134322718 -62872714 + CT-rich Low_complexity Low_complexity 1 49 0 6 1609 776 167 34 14 chr1 134323369 134323515 -62871917 - B1_Mur4 SINE Alu -1 149 1 6 1609 328 309 153 14 chr1 134323671 134324114 -62871318 - L1MC4 LINE L1 -4 8038 7534 6 1609 1172 137 66 0 chr1 134324360 134324571 -62870861 + URR1B DNA MER1_type 1 225 0 6 1609 310 233 206 22 chr1 134324594 134324778 -62870654 - L1MC4 LINE L1 -907 7135 6918 6 1609 423 0 0 0 chr1 134325000 134325047 -62870385 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1609 339 238 90 54 chr1 134325122 134325233 -62870199 + PB1D7 SINE Alu 5 119 -1 6 1609 405 234 135 38 chr1 134325654 134325787 -62869645 - LTR48 LTR ERV1 -641 146 1 6 1609 833 197 7 0 chr1 134326191 134326328 -62869104 + B1_Mur2 SINE Alu 3 140 -9 6 1609 291 286 117 8 chr1 134326350 134326470 -62868962 - B3A SINE B2 0 198 66 6 1609 459 253 0 10 chr1 134326485 134326581 -62868851 - B3A SINE B2 -102 96 2 6 1609 308 248 69 95 chr1 134326582 134326599 -62868833 - PB1D7 SINE Alu -1 119 102 6 1609 1254 106 32 0 chr1 134326599 134326787 -62868645 - B2_Mm2 SINE B2 0 195 2 6 1609 308 248 69 95 chr1 134326787 134326885 -62868547 - PB1D7 SINE Alu -19 101 7 6 1609 329 211 29 78 chr1 134326799 134326902 -62868530 - ID_B1 SINE B4 -49 175 78 6 1609 389 167 13 0 chr1 134327103 134327181 -62868251 + CT-rich Low_complexity Low_complexity 2 80 0 6 1609 429 204 184 0 chr1 134327818 134327921 -62867511 + B1_Mur1 SINE Alu 1 122 -27 6 1609 1315 92 5 16 chr1 134327986 134328174 -62867258 + B2_Mm2 SINE B2 1 186 -9 6 1609 1170 35 13 40 chr1 134331601 134331752 -62863680 - B1_Mm SINE Alu 0 147 1 6 1609 308 44 44 0 chr1 134332304 134332349 -62863083 + (TATG)n Simple_repeat Simple_repeat 4 50 0 6 1609 320 0 25 0 chr1 134332355 134332395 -62863037 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 6 1609 1051 232 25 91 chr1 134332407 134332464 -62862968 - B4A SINE B4 -26 266 216 6 1609 988 228 19 0 chr1 134332464 134332675 -62862757 - B3 SINE B2 0 216 2 6 1609 1051 232 25 91 chr1 134332675 134332902 -62862530 - B4A SINE B4 -77 215 1 6 1609 411 21 0 0 chr1 134333057 134333105 -62862327 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1609 273 98 0 0 chr1 134334055 134334096 -62861336 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1609 200 214 18 0 chr1 134334207 134334263 -62861169 + CT-rich Low_complexity Low_complexity 1 57 0 6 1609 356 268 10 40 chr1 134334273 134334374 -62861058 - PB1D10 SINE Alu -19 98 1 6 1609 1384 158 8 24 chr1 134334838 134335091 -62860341 - MTC LTR MaLR -2 419 171 6 1609 1228 54 0 0 chr1 134335561 134335708 -62859724 + B1_Mm SINE Alu 1 147 0 6 1609 186 71 0 0 chr1 134335710 134335738 -62859694 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1609 227 306 0 61 chr1 134335763 134335829 -62859603 - tRNA-Ala-GCY_ tRNA tRNA -4 71 10 6 1609 2464 105 54 3 chr1 134335894 134336284 -62859148 + MTC LTR MaLR 5 414 -7 6 1609 658 293 72 0 chr1 134336281 134336462 -62858970 + ID_B1 SINE B4 29 222 -2 6 1609 694 221 21 0 chr1 134336468 134336608 -62858824 + B1_Mur2 SINE Alu 2 144 -5 6 1609 189 171 0 0 chr1 134337030 134337065 -62858367 + T-rich Low_complexity Low_complexity 1 35 0 6 1609 180 304 106 21 chr1 134337255 134337349 -62858083 + MIRb SINE MIR 141 242 -26 6 1609 646 156 164 0 chr1 134337403 134337531 -62857901 - B1_Mur3 SINE Alu 0 149 1 6 1609 736 229 57 34 chr1 134337560 134337736 -62857696 + B3A SINE B2 3 182 -16 6 1609 189 0 0 0 chr1 134337736 134337757 -62857675 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1609 587 196 29 71 chr1 134338287 134338457 -62856975 + RSINE1 SINE B4 3 165 0 6 1609 2166 167 8 5 chr1 134338819 134339210 -62856222 - MTD LTR MaLR -8 411 20 6 1609 355 301 22 29 chr1 134340133 134340266 -62855166 + B1F SINE Alu 17 146 -3 6 1609 2143 67 6 60 chr1 134340313 134340645 -62854787 - ORR1A2 LTR MaLR -8 319 6 6 1609 300 264 0 0 chr1 134340881 134340968 -62854464 + GA-rich Low_complexity Low_complexity 2 88 0 6 1609 1208 54 0 0 chr1 134340971 134341118 -62854314 + B1_Mm SINE Alu 1 147 0 6 1609 916 168 7 0 chr1 134341237 134341386 -62854046 - B1_Mur4 SINE Alu 0 150 1 6 1609 369 231 153 20 chr1 134341561 134341711 -62853721 - Lx8 LINE L1 -3 7470 7301 6 1609 838 266 116 57 chr1 134341736 134342106 -62853326 - Lx8 LINE L1 -385 7088 6697 6 1609 268 152 0 0 chr1 134342106 134342152 -62853280 - ID_B1 SINE B4 -8 216 171 6 1609 974 223 24 9 chr1 134342277 134342490 -62852942 + ID_B1 SINE B4 1 216 -8 6 1609 214 0 111 0 chr1 134342527 134342563 -62852869 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1609 210 321 21 125 chr1 134342623 134342719 -62852713 + B4 SINE B4 54 139 -153 6 1609 195 69 0 0 chr1 134342857 134342886 -62852546 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 6 1609 269 243 252 0 chr1 134343452 134343559 -62851873 + RSINE1 SINE B4 3 136 -29 6 1609 257 252 107 16 chr1 134343595 134343610 -62851822 + B1F SINE Alu 15 144 -3 6 1609 385 260 48 0 chr1 134343610 134343714 -62851718 + ID_B1 SINE B4 111 219 -5 6 1609 634 204 48 34 chr1 134344232 134344379 -62851053 - B1_Mur3 SINE Alu 0 149 1 6 1609 326 200 0 16 chr1 134344687 134344748 -62850684 - B4A SINE B4 -58 234 175 6 1609 389 278 10 10 chr1 134344760 134344858 -62850574 - B4A SINE B4 -194 98 1 6 1609 255 330 11 0 chr1 134345096 134345184 -62850248 + CT-rich Low_complexity Low_complexity 4 92 0 6 1609 360 269 83 23 chr1 134345186 134345319 -62850113 - B1F SINE Alu -8 141 1 6 1609 334 269 28 19 chr1 134347205 134347311 -62848121 - MIRc SINE MIR -115 153 47 6 1609 297 0 0 0 chr1 134347368 134347401 -62848031 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1609 535 221 0 0 chr1 134347418 134347513 -62847919 - B1_Mur2 SINE Alu -53 96 2 6 1609 980 158 148 0 chr1 134347555 134347751 -62847681 + URR1B DNA MER1_type 1 225 0 6 1609 437 229 45 9 chr1 134347879 134347989 -62847443 - PB1D9 SINE Alu -6 114 1 6 1609 214 274 0 19 chr1 134348203 134348255 -62847177 + polypyrimidine Low_complexity Low_complexity 3 53 0 6 201 331 271 112 0 chr1 134348733 134348840 -62846592 + PB1 SINE Alu 3 121 -6 6 1610 257 81 0 0 chr1 134348845 134348882 -62846550 - ID4 SINE ID -40 43 7 6 1610 237 33 0 0 chr1 134348900 134348930 -62846502 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1610 201 368 0 0 chr1 134350150 134350207 -62845225 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1610 325 250 25 85 chr1 134350304 134350422 -62845010 - ID_B1 SINE B4 -18 206 96 6 1610 269 274 82 0 chr1 134350360 134350433 -62844999 - PB1D10 SINE Alu -38 79 1 6 1610 433 152 284 35 chr1 134350450 134350566 -62844866 - B1_Mur1 SINE Alu 0 149 5 6 1610 1147 68 0 13 chr1 134351027 134351167 -62844265 + B1_Mus2 SINE Alu 1 140 -7 6 1610 423 0 0 0 chr1 134351167 134351214 -62844218 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1610 362 259 0 12 chr1 134351240 134351322 -62844110 + ID4 SINE ID 1 81 -2 7 1610 797 156 7 39 chr1 134351356 134351509 -62843923 + B1_Mur2 SINE Alu 1 148 -1 7 1610 257 169 38 38 chr1 134353709 134353789 -62841643 + (TA)n Simple_repeat Simple_repeat 1 80 0 7 1610 264 269 29 15 chr1 134353969 134354037 -62841395 + ID4_ SINE ID 1 69 -14 7 1610 300 320 50 60 chr1 134355321 134355623 -62839809 - L1MC4 LINE L1 -196 7846 7548 7 1610 329 106 0 0 chr1 134355806 134355853 -62839579 + RSINE1 SINE B4 78 124 -41 7 1610 243 0 0 0 chr1 134355853 134355880 -62839552 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1610 191 267 26 39 chr1 134356273 134356351 -62839081 - L2c LINE L2 -47 3340 3264 7 1610 1495 168 79 222 chr1 134357120 134357581 -62837851 - RMER4A LTR ERVK 0 466 62 7 1610 1284 20 0 0 chr1 134357581 134357727 -62837705 - B1_Mus2 SINE Alu 0 147 2 7 1610 1495 168 79 222 chr1 134357727 134357774 -62837658 - RMER4A LTR ERVK -405 61 26 7 1610 910 129 141 0 chr1 134357774 134357944 -62837488 + B2_Mm2 SINE B2 2 195 0 7 1610 1495 168 79 222 chr1 134357944 134357978 -62837454 - RMER4A LTR ERVK -441 25 1 7 1610 976 166 108 5 chr1 134358648 134358842 -62836590 - B3 SINE B2 0 216 3 7 1610 556 194 41 0 chr1 134359088 134359186 -62836246 - PB1D10 SINE Alu -12 105 4 7 1610 274 219 47 0 chr1 134362435 134362499 -62832933 + ID4_ SINE ID 17 83 0 7 1610 3607 165 221 8 chr1 134363659 134364615 -62830817 - ORR1C2-int LTR MaLR -350 1159 1 7 1610 386 121 30 0 chr1 134364615 134364681 -62830751 - ORR1C2 LTR MaLR 0 384 317 7 1610 1339 73 51 0 chr1 134364822 134364999 -62830433 + B2_Mm2 SINE B2 1 186 -9 7 1610 394 216 68 10 chr1 134365094 134365197 -62830235 - MLT1A1 LTR MaLR -145 263 155 7 1610 714 148 28 43 chr1 134365299 134365440 -62829992 + B1_Mur4 SINE Alu 6 144 -6 7 1610 1435 61 11 0 chr1 134366428 134366609 -62828823 + B2_Mm1t SINE B2 2 184 -9 7 1610 384 22 0 0 chr1 134366612 134366657 -62828775 + (GAAA)n Simple_repeat Simple_repeat 3 47 0 7 1610 2701 60 33 3 chr1 134366716 134367052 -62828380 + ORR1A1 LTR MaLR 1 346 0 7 1610 21 0 0 0 chr1 134367244 134367265 -62828167 + AT_rich Low_complexity Low_complexity 1 21 0 7 1610 963 177 50 6 chr1 134367411 134367593 -62827839 - B3 SINE B2 -12 204 15 7 1610 189 147 0 0 chr1 134367964 134367998 -62827434 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 1610 243 61 0 0 chr1 134368143 134368176 -62827256 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1610 252 0 0 0 chr1 134368176 134368203 -62827229 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1610 1196 54 0 7 chr1 134368412 134368561 -62826871 + B1_Mus1 SINE Alu 1 148 0 7 1610 360 238 0 48 chr1 134369156 134369240 -62826192 - ID4 SINE ID -3 80 1 7 1610 273 57 0 0 chr1 134369392 134369427 -62826005 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1610 240 238 0 0 chr1 134369439 134369502 -62825930 + CT-rich Low_complexity Low_complexity 1 63 0 7 1610 293 0 27 0 chr1 134369512 134369549 -62825883 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 1610 910 78 101 0 chr1 134369552 134369681 -62825751 - B1_Mus2 SINE Alu -5 142 1 7 1610 883 138 27 7 chr1 134369989 134370135 -62825297 + B1_Mur4 SINE Alu 1 149 -1 7 1610 1127 75 0 0 chr1 134370202 134370349 -62825083 + B1_Mus1 SINE Alu 2 148 0 7 1610 213 159 0 0 chr1 134370350 134370394 -62825038 + A-rich Low_complexity Low_complexity 1 44 0 7 1610 750 199 0 0 chr1 134370473 134370786 -62824646 + (TG)n Simple_repeat Simple_repeat 1 313 0 7 1610 856 138 23 0 chr1 134370792 134370966 -62824466 + (TATG)n Simple_repeat Simple_repeat 2 179 0 7 1610 180 250 71 0 chr1 134371220 134371276 -62824156 - MER5B DNA MER1_type -2 176 117 7 1610 205 186 0 0 chr1 134371739 134371782 -62823650 + A-rich Low_complexity Low_complexity 1 43 0 7 1610 243 0 0 0 chr1 134371798 134371825 -62823607 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1610 480 118 0 12 chr1 134371891 134371977 -62823455 - L1Md_F3 LINE L1 0 6584 6500 7 1610 216 0 0 0 chr1 134372172 134372196 -62823236 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1610 190 21 0 96 chr1 134372445 134372497 -62822935 + (CAAAC)n Simple_repeat Simple_repeat 1 47 0 7 1610 264 253 66 0 chr1 134373082 134373173 -62822259 - MIR SINE MIR -42 220 124 7 1610 31 0 0 0 chr1 134374511 134374542 -62820890 + AT_rich Low_complexity Low_complexity 1 31 0 7 1610 233 125 0 77 chr1 134374672 134374684 -62820748 - B3A SINE B2 -149 49 38 7 1610 1123 69 0 20 chr1 134374684 134374832 -62820600 - B1_Mus1 SINE Alu -2 146 2 7 1610 281 51 0 0 chr1 134374832 134374871 -62820561 - B2_Mm2 SINE B2 -155 40 2 7 1610 1282 153 19 23 chr1 134375019 134375233 -62820199 - B3 SINE B2 -3 213 1 7 1610 25 0 0 0 chr1 134376644 134376669 -62818763 + AT_rich Low_complexity Low_complexity 1 25 0 7 1610 652 225 79 7 chr1 134376695 134376847 -62818585 - RSINE1 SINE B4 0 165 3 7 1610 555 239 99 71 chr1 134376939 134377222 -62818210 - B4A SINE B4 0 292 2 7 1610 210 71 0 0 chr1 134378884 134378912 -62816520 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1610 213 265 132 0 chr1 134379024 134379107 -62816325 - B1F SINE Alu -30 119 26 7 1610 422 185 132 16 chr1 134379214 134379335 -62816097 - B4A SINE B4 -1 291 157 7 1610 1179 75 0 0 chr1 134379469 134379629 -62815803 + B2_Mm2 SINE B2 2 161 -34 7 1610 213 39 0 0 chr1 134379630 134379656 -62815776 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1610 489 252 95 7 chr1 134379673 134379821 -62815611 - RSINE1 SINE B4 -2 163 3 7 1610 231 346 0 69 chr1 134381538 134381625 -62813807 - ID2 SINE ID -2 81 1 7 1610 258 32 0 0 chr1 134381676 134381707 -62813725 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1610 407 366 43 8 chr1 134381898 134382132 -62813300 - MIR SINE MIR -1 261 20 7 1610 471 296 124 11 chr1 134382204 134382477 -62812955 - L1MDa LINE L1 -4140 2493 2190 7 1610 726 171 49 14 chr1 134382560 134382702 -62812730 - B1_Mur2 SINE Alu -2 147 1 7 1610 888 126 28 7 chr1 134382806 134382950 -62812482 - B1_Mus1 SINE Alu 0 148 2 7 1610 5110 191 98 29 chr1 134383020 134384173 -62811259 - Lx9 LINE L1 0 7644 6412 7 1610 756 258 66 0 chr1 134384179 134384361 -62811071 - ID_B1 SINE B4 -30 194 1 7 1610 362 279 111 53 chr1 134384361 134384739 -62810693 - L1MDa LINE L1 -4938 1695 1296 7 1610 391 308 78 72 chr1 134384886 134385218 -62810214 - L1MDa LINE L1 -6112 521 188 7 1610 1162 167 36 44 chr1 134385240 134385515 -62809917 - Lx4B LINE L1 -1 7057 6785 7 1610 381 143 63 42 chr1 134385590 134385685 -62809747 - PB1D7 SINE Alu -2 118 22 7 1610 481 214 0 0 chr1 134385868 134385952 -62809480 + PB1D10 SINE Alu 1 84 -33 7 1610 473 296 14 29 chr1 134387355 134387494 -62807938 + B1F SINE Alu 7 143 -6 7 1610 912 144 17 0 chr1 134387497 134387670 -62807762 + GA-rich Low_complexity Low_complexity 2 177 0 7 1610 304 266 25 12 chr1 134387688 134387768 -62807664 + ID4_ SINE ID 3 83 0 7 1610 988 115 13 26 chr1 134387887 134388039 -62807393 + B1_Mur4 SINE Alu 1 150 0 7 1610 257 203 68 0 chr1 134388302 134388361 -62807071 + ID4 SINE ID 19 81 -2 7 1610 1502 53 0 0 chr1 134388371 134388561 -62806871 + B2_Mm1t SINE B2 2 191 -2 7 1610 405 286 43 0 chr1 134388726 134388866 -62806566 - L1MB3 LINE L1 -212 5971 5826 7 1610 265 276 69 0 chr1 134389275 134389362 -62806070 - PB1D9 SINE Alu -8 112 20 7 1610 28 71 0 0 chr1 134389466 134389522 -62805910 + AT_rich Low_complexity Low_complexity 1 56 0 7 1610 1399 63 0 0 chr1 134389701 134389876 -62805556 + B2_Mm1t SINE B2 1 175 -18 7 1610 319 256 0 12 chr1 134389933 134390016 -62805416 - ID4 SINE ID -1 82 1 7 1610 244 315 83 24 chr1 134391922 134392091 -62803341 + MIR SINE MIR 84 262 0 7 1610 391 252 10 10 chr1 134392182 134392286 -62803146 - PB1D10 SINE Alu -9 108 5 7 1610 399 89 0 0 chr1 134392366 134392422 -62803010 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1610 711 191 15 7 chr1 134393004 134393141 -62802291 + B1_Mur3 SINE Alu 1 138 -11 7 1610 471 18 0 0 chr1 134394047 134394103 -62801329 + (TTA)n Simple_repeat Simple_repeat 2 57 0 7 1610 193 340 76 19 chr1 134394106 134394211 -62801221 - MIRc SINE MIR -126 142 32 7 1610 24 32 0 0 chr1 134394365 134394396 -62801036 + AT_rich Low_complexity Low_complexity 1 31 0 7 1610 216 173 0 37 chr1 134395054 134395108 -62800324 + T-rich Low_complexity Low_complexity 2 53 0 7 1610 266 0 29 0 chr1 134395544 134395578 -62799854 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1610 293 242 204 66 chr1 134396169 134396300 -62799132 - B1_Mus2 SINE Alu -9 140 1 7 1610 312 304 8 42 chr1 134396390 134396510 -62798922 + L1MC4a LINE L1 6564 6679 -1203 7 1610 315 0 0 0 chr1 134396510 134396545 -62798887 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1610 337 247 0 0 chr1 134397698 134397771 -62797661 + ID4 SINE ID 9 81 -2 7 1610 863 109 0 2 chr1 134397853 134397991 -62797441 - B1_Mur4 SINE Alu -10 140 3 7 1610 364 221 17 103 chr1 134397888 134398004 -62797428 - MT2B LTR ERVL -344 257 152 7 1610 389 273 130 0 chr1 134402939 134403093 -62792339 - ID_B1 SINE B4 -28 196 23 7 1610 214 188 13 115 chr1 134403108 134403186 -62792246 - PB1D10 SINE Alu 0 117 48 7 1610 852 138 13 27 chr1 134403342 134403491 -62791941 - B1_Mur3 SINE Alu -1 148 2 7 1610 22 70 0 0 chr1 134405165 134405208 -62790224 + AT_rich Low_complexity Low_complexity 1 43 0 7 1610 248 247 51 25 chr1 134405812 134405891 -62789541 - MER5A DNA MER1_type -14 175 95 8 1610 750 202 206 26 chr1 134405960 134406270 -62789162 - ORR1D2 LTR MaLR -3 367 2 8 1610 817 211 8 133 chr1 134406379 134406620 -62788812 - B4 SINE B4 0 292 82 8 1610 334 214 9 67 chr1 134407448 134407553 -62787879 + PB1D10 SINE Alu 3 101 -16 8 1610 264 30 0 0 chr1 134407773 134407806 -62787626 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1610 231 150 33 16 chr1 134408652 134408713 -62786719 + CT-rich Low_complexity Low_complexity 2 63 0 8 1610 377 295 21 41 chr1 134410693 134410775 -62784657 + MIR3 SINE MIR 42 122 -86 8 1610 1164 36 0 0 chr1 134410775 134410915 -62784517 - B1_Mus1 SINE Alu -7 141 2 8 1610 377 295 21 41 chr1 134410915 134410977 -62784455 + MIR3 SINE MIR 123 183 -25 8 1610 315 0 0 0 chr1 134413917 134413952 -62781480 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1610 1101 51 0 0 chr1 134413952 134414090 -62781342 - B1_Mus1 SINE Alu -9 139 2 8 1610 1433 43 0 4 chr1 134414483 134414717 -62780715 + (TC)n Simple_repeat Simple_repeat 1 232 0 8 1610 196 276 121 10 chr1 134415926 134416025 -62779407 + MIRb SINE MIR 10 126 -142 8 1610 392 0 21 0 chr1 134416044 134416092 -62779340 + (ATG)n Simple_repeat Simple_repeat 1 49 0 8 1610 228 135 0 0 chr1 134416317 134416354 -62779078 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 8 1610 298 299 9 32 chr1 134416446 134416561 -62778871 - MIRc SINE MIR -137 131 19 8 1610 201 94 0 0 chr1 134417591 134417623 -62777809 + (C)n Simple_repeat Simple_repeat 1 32 0 8 1610 229 207 0 6 chr1 134419139 134419191 -62776241 + MIR SINE MIR 109 162 -106 8 1610 1087 178 9 36 chr1 134420561 134420575 -62774857 - B3 SINE B2 0 216 204 8 1610 315 0 0 0 chr1 134420575 134420610 -62774822 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1610 1087 178 9 36 chr1 134420610 134420817 -62774615 - B3 SINE B2 -13 203 1 8 1610 268 365 123 0 chr1 134420819 134420989 -62774443 + L2a LINE L2 2983 3173 -253 8 1610 655 215 219 6 chr1 134421184 134421362 -62774070 + B3 SINE B2 1 216 0 8 1610 265 193 95 0 chr1 134421555 134421638 -62773794 - MIR SINE MIR -124 144 49 8 1610 205 75 0 111 chr1 134421656 134421701 -62773731 + A-rich Low_complexity Low_complexity 4 43 0 8 1610 186 43 0 0 chr1 134422078 134422101 -62773331 + (ATGGTG)n Simple_repeat Simple_repeat 1 23 0 8 1610 287 380 51 20 chr1 134423472 134423668 -62771764 - MIR SINE MIR -10 252 51 8 1610 1050 99 0 0 chr1 134423796 134424090 -62771342 + (TG)n Simple_repeat Simple_repeat 1 294 0 8 1610 330 212 160 10 chr1 134425994 134426094 -62769338 + MER3 DNA MER1_type 48 162 -47 8 1610 334 310 52 44 chr1 134426129 134426264 -62769168 - L2c LINE L2 0 3387 3252 8 1610 185 228 304 0 chr1 134426410 134426489 -62768943 + MIRc SINE MIR 4 106 -162 8 1610 1781 151 24 55 chr1 134426555 134426975 -62768457 - RMER17C LTR ERVK -3 407 1 8 1610 212 286 68 28 chr1 134428491 134428591 -62766841 + MER5B DNA MER1_type 57 177 -12 8 1610 234 91 0 0 chr1 134432457 134432490 -62762942 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1610 1168 54 0 0 chr1 134432512 134432660 -62762772 - B1_Mus1 SINE Alu 0 148 1 8 1610 279 250 125 0 chr1 134432664 134432744 -62762688 - B3A SINE B2 0 198 109 8 1610 216 281 59 59 chr1 134432845 134432913 -62762519 + MIRc SINE MIR 83 150 -118 8 1610 493 219 97 26 chr1 134433644 134433799 -62761633 + B2_Mm2 SINE B2 3 168 -27 8 1610 237 196 0 0 chr1 134433886 134433942 -62761490 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1610 642 202 0 0 chr1 134433964 134434122 -62761310 + (TG)n Simple_repeat Simple_repeat 1 158 0 8 1610 306 0 0 0 chr1 134434128 134434162 -62761270 + (TC)n Simple_repeat Simple_repeat 1 34 0 8 1610 255 372 0 11 chr1 134434173 134434260 -62761172 - ID_B1 SINE B4 -69 155 70 8 1610 254 252 146 11 chr1 134435049 134435184 -62760248 + MIR SINE MIR 33 186 -82 8 1610 225 222 0 69 chr1 134436191 134436249 -62759183 - ID4_ SINE ID -10 73 20 8 1610 206 163 47 0 chr1 134438344 134438387 -62757045 + G-rich Low_complexity Low_complexity 3 47 0 8 1610 216 0 0 0 chr1 134440857 134440881 -62754551 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 8 1610 483 224 17 17 chr1 134441552 134441729 -62753703 + CT-rich Low_complexity Low_complexity 1 177 0 8 1610 1168 48 0 13 chr1 134441770 134441919 -62753513 - B1_Mus1 SINE Alu 0 148 2 8 1610 297 128 0 0 chr1 134441921 134441968 -62753464 + (TCC)n Simple_repeat Simple_repeat 2 48 0 8 1610 2850 39 2 89 chr1 134443122 134443547 -62751885 + RLTR10 LTR ERVK 1 388 -2 8 1610 2018 53 8 0 chr1 134443558 134443822 -62751610 + RLTR10-int LTR ERVK 39 304 -1683 8 1610 707 314 5 0 chr1 134443855 134444049 -62751383 - ID_B1 SINE B4 -29 195 1 8 1610 957 18 0 0 chr1 134444130 134444241 -62751191 + (TCTCC)n Simple_repeat Simple_repeat 3 113 0 8 1610 880 169 0 13 chr1 134444259 134444409 -62751023 - B1_Mur2 SINE Alu -1 148 1 8 1610 288 130 0 0 chr1 134445027 134445073 -62750359 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1610 1202 298 62 55 chr1 134445449 134446017 -62749415 - Lx8 LINE L1 -8 7465 6894 8 1610 1180 272 151 7 chr1 134446137 134446541 -62748891 - Lx8 LINE L1 -815 6658 6197 8 1610 526 311 10 29 chr1 134446598 134446790 -62748642 + B4A SINE B4 46 233 -59 8 1610 430 335 79 0 chr1 134446790 134446942 -62748490 + RSINE1 SINE B4 2 165 0 8 1610 667 276 72 84 chr1 134447116 134447709 -62747723 - Lx7 LINE L1 -1507 6189 5604 8 1610 1098 93 35 76 chr1 134447730 134447927 -62747505 - B2_Mm2 SINE B2 -1 194 6 8 1610 906 291 113 7 chr1 134447928 134448343 -62747089 - Lx7 LINE L1 -335 5545 5087 8 1610 894 309 149 11 chr1 134448363 134448899 -62746533 - L1_Rod LINE L1 -3419 2428 1819 8 1610 432 342 46 7 chr1 134448923 134449206 -62746226 - L1_Rod LINE L1 -4229 1618 1325 8 1610 733 220 14 0 chr1 134449241 134449382 -62746050 - RSINE1 SINE B4 -17 148 6 8 1610 268 261 92 16 chr1 134449384 134449608 -62745824 - L1_Rod LINE L1 -6269 1339 1100 8 1610 3128 33 5 5 chr1 134450238 134450608 -62744824 - L1Md_F3 LINE L1 -14 6570 6201 8 1610 218 236 69 0 chr1 134450622 134450694 -62744738 + GA-rich Low_complexity Low_complexity 5 81 0 8 1610 345 316 54 114 chr1 134451139 134451283 -62744149 + MLT2C1 LTR ERVL 37 306 -257 8 1610 418 256 30 0 chr1 134451283 134451307 -62744125 - ID_B1 SINE B4 -75 217 117 8 1610 375 265 41 0 chr1 134451307 134451405 -62744027 - PB1D10 SINE Alu -15 102 1 8 1610 345 316 54 114 chr1 134451413 134451516 -62743916 + MLT2C1 LTR ERVL 307 504 -59 8 1610 339 25 0 0 chr1 134451516 134451556 -62743876 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1610 345 284 33 112 chr1 134451556 134451602 -62743830 + MLT2C1 LTR ERVL 505 527 -36 8 1610 354 250 18 18 chr1 134451814 134451924 -62743508 - MLT1A LTR MaLR 0 374 265 8 1610 579 96 0 0 chr1 134452009 134452092 -62743340 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 8 1610 318 24 24 0 chr1 134452092 134452133 -62743299 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 8 1610 998 151 0 0 chr1 134452136 134452282 -62743150 - B1_Mus1 SINE Alu 0 148 3 8 1610 34 24 0 0 chr1 134453368 134453409 -62742023 + AT_rich Low_complexity Low_complexity 1 41 0 8 1610 453 209 42 42 chr1 134453414 134453534 -62741898 + PB1D9 SINE Alu 1 120 0 8 1610 352 303 92 16 chr1 134453554 134453802 -62741630 + MER58B DNA MER1_type 55 341 0 8 1610 454 318 25 50 chr1 134453902 134454101 -62741331 + MER20 DNA MER1_type 26 219 0 8 1610 180 296 70 31 chr1 134456018 134456147 -62739285 + L3 LINE CR1 2468 2601 -1888 8 1610 217 333 47 19 chr1 134456374 134456481 -62738951 - B1_Mur1 SINE Alu 0 149 40 8 1610 417 314 8 0 chr1 134457402 134457523 -62737909 - MIR SINE MIR -63 199 78 8 1610 249 344 122 6 chr1 134457777 134457941 -62737491 + MIRb SINE MIR 16 198 -70 8 1610 340 259 12 12 chr1 134457951 134458033 -62737399 + ID4 SINE ID 2 83 0 8 1610 1393 80 0 0 chr1 134459717 134459893 -62735539 + B2_Mm2 SINE B2 2 177 -18 8 1610 327 229 108 0 chr1 134460060 134460143 -62735289 + 7SLRNA srpRNA srpRNA 24 86 -228 8 1610 308 157 0 28 chr1 134460145 134460217 -62735215 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 8 1610 287 167 0 108 chr1 134461088 134461162 -62734270 - PB1 SINE Alu -20 107 42 8 1610 301 279 108 48 chr1 134462377 134462543 -62732889 + MIR3 SINE MIR 3 178 -30 8 1610 324 48 0 0 chr1 134463522 134463564 -62731868 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1610 315 0 0 0 chr1 134466620 134466655 -62728777 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1610 304 333 23 69 chr1 134467341 134467515 -62727917 - MIR3 SINE MIR -33 175 10 8 1610 1277 182 13 39 chr1 134468886 134469115 -62726317 - URR1B DNA MER1_type -1 224 2 8 1610 333 297 0 11 chr1 134470544 134470641 -62724791 + B4A SINE B4 29 124 -168 8 1610 396 0 0 0 chr1 134470643 134470687 -62724745 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1610 247 170 0 21 chr1 134470700 134470748 -62724684 + B4A SINE B4 186 232 -60 8 1610 1493 73 16 5 chr1 134471859 134472052 -62723380 + B2_Mm2 SINE B2 1 195 0 8 1610 195 42 0 0 chr1 134473282 134473306 -62722126 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1610 1190 74 0 0 chr1 134473306 134473454 -62721978 - B1_Mus1 SINE Alu 0 148 1 8 1610 204 97 0 0 chr1 134479038 134479069 -62716363 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1611 222 274 96 0 chr1 134481525 134481598 -62713834 + ID4_ SINE ID 3 82 -1 8 1611 294 206 0 0 chr1 134484697 134484765 -62710667 + (TGG)n Simple_repeat Simple_repeat 3 70 0 8 1611 206 158 26 0 chr1 134489968 134490006 -62705426 + GA-rich Low_complexity Low_complexity 2 40 0 8 1611 249 351 0 17 chr1 134493752 134493868 -62701564 + GA-rich Low_complexity Low_complexity 4 117 0 8 1611 410 171 53 0 chr1 134496131 134496207 -62699225 - ID4_ SINE ID -3 80 1 8 1611 488 312 35 56 chr1 134497032 134497229 -62698203 + LTR33 LTR ERVL 90 282 -233 8 1611 195 42 0 0 chr1 134498782 134498806 -62696626 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 8 1611 1121 161 8 82 chr1 134500017 134500261 -62695171 + URR1A DNA MER1_type 1 226 0 1 1611 204 341 11 11 chr1 134500874 134500963 -62694469 - MIRb SINE MIR 0 268 180 2 1611 1132 238 22 18 chr1 134500963 134501241 -62694191 - B4A SINE B4 -6 286 8 3 1611 670 275 0 12 chr1 134501284 134501446 -62693986 - RSINE1 SINE B4 0 165 6 4 1611 348 286 60 26 chr1 134501460 134501611 -62693821 - MIRb SINE MIR -79 189 30 2 1611 1136 152 4 122 chr1 134502915 134503169 -62692263 + URR1B DNA MER1_type 1 224 -1 5 1611 207 0 0 0 chr1 134503204 134503227 -62692205 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1611 197 180 22 22 chr1 134504089 134504180 -62691252 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1611 231 217 21 42 chr1 134504287 134504383 -62691049 + (CACAC)n Simple_repeat Simple_repeat 5 98 0 8 1611 450 156 22 28 chr1 134504386 134504564 -62690868 + (CA)n Simple_repeat Simple_repeat 2 178 0 9 1611 327 65 0 0 chr1 134504562 134504608 -62690824 + (CAT)n Simple_repeat Simple_repeat 1 46 0 1 1611 326 270 68 29 chr1 134505624 134505727 -62689705 + MER5B DNA MER1_type 4 110 -68 1 1611 849 146 13 0 chr1 134505945 134506092 -62689340 + B2_Mm2 SINE B2 1 162 -36 1 1611 486 0 0 0 chr1 134508315 134508369 -62687063 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1611 206 227 14 83 chr1 134508624 134508696 -62686736 + MIRb SINE MIR 166 232 -36 1 1611 523 298 7 0 chr1 134508740 134508881 -62686551 - B1F SINE Alu -6 143 2 1 1611 2251 312 82 18 chr1 134510118 134511347 -62684085 - L1M2 LINE L1 -2457 4388 3081 1 1611 243 283 37 19 chr1 134511460 134511568 -62683864 - L1MCa LINE L1 -4766 1742 1633 1 1611 316 262 117 0 chr1 134511597 134511700 -62683732 - RSINE1 SINE B4 -6 159 45 1 1611 331 275 102 53 chr1 134511728 134511996 -62683436 - L1M2 LINE L1 -4333 2516 2227 1 1611 2354 148 50 5 chr1 134511996 134512397 -62683035 + MTC LTR MaLR 1 419 -2 1 1611 331 275 102 53 chr1 134512397 134512489 -62682943 - L1M2 LINE L1 -4623 2226 2138 1 1611 180 0 0 0 chr1 134513588 134513608 -62681824 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1611 3311 105 255 2 chr1 134513608 134514208 -62681224 + Lx2 LINE L1 6246 6997 0 2 1611 922 83 8 0 chr1 134514236 134514368 -62681064 + B2_Mm1t SINE B2 59 191 -2 2 1611 969 105 12 18 chr1 134515011 134515176 -62680256 + URR1A DNA MER1_type 57 220 -6 2 1611 1126 104 54 11 chr1 134516427 134516612 -62678820 + B2_Mm2 SINE B2 3 195 0 2 1611 357 159 0 0 chr1 134516624 134516687 -62678745 + A-rich Low_complexity Low_complexity 1 63 0 2 1611 369 0 0 0 chr1 134516874 134516915 -62678517 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1611 237 98 0 0 chr1 134518994 134519035 -62676397 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 2 1611 305 102 0 17 chr1 134519745 134519805 -62675627 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 1611 196 270 53 19 chr1 134520307 134520398 -62675034 - MIRm SINE MIR -76 192 91 2 1611 317 237 47 21 chr1 134521047 134521139 -62674293 + L1MEg LINE L1 2425 2521 -4112 3 1611 251 388 20 0 chr1 134521609 134521707 -62673725 - L3b LINE CR1 -189 293 194 3 1611 350 351 58 0 chr1 134521954 134522125 -62673307 - MIR SINE MIR -74 188 8 3 1611 1152 189 34 0 chr1 134523375 134523581 -62671851 - B3 SINE B2 0 216 4 3 1611 198 0 0 0 chr1 134523625 134523647 -62671785 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1611 485 300 64 64 chr1 134523838 134524119 -62671313 + ORR1E LTR MaLR 53 333 -26 3 1611 239 133 0 22 chr1 134527140 134527186 -62668246 + GA-rich Low_complexity Low_complexity 3 47 0 3 1611 195 355 0 26 chr1 134529182 134529260 -62666172 - MIRm SINE MIR -4 272 197 3 1611 421 303 0 0 chr1 134529463 134529641 -62665791 + GA-rich Low_complexity Low_complexity 1 178 0 3 1611 329 306 0 22 chr1 134529661 134529845 -62665587 + GA-rich Low_complexity Low_complexity 1 180 0 3 1611 438 222 375 58 chr1 134530404 134530676 -62664756 - MTEa LTR MaLR -21 358 1 3 1611 347 141 0 15 chr1 134532033 134532098 -62663334 + GA-rich Low_complexity Low_complexity 2 65 0 4 1611 333 140 0 0 chr1 134532101 134532158 -62663274 + (CAT)n Simple_repeat Simple_repeat 1 57 0 4 1611 361 304 0 65 chr1 134532813 134532936 -62662496 + PB1D10 SINE Alu 3 117 0 4 1611 184 308 30 15 chr1 134533066 134533132 -62662300 - MIR SINE MIR -72 136 70 4 1611 624 242 21 21 chr1 134533277 134533463 -62661969 - B3A SINE B2 -11 187 2 4 1611 230 344 31 0 chr1 134535124 134535220 -62660212 - MER5A1 DNA MER1_type -4 162 64 4 1611 240 281 16 0 chr1 134535231 134535295 -62660137 - ID SINE ID -151 73 9 4 1611 202 271 119 0 chr1 134535306 134535365 -62660067 - MER5A1 DNA MER1_type -97 69 9 4 1611 412 325 45 7 chr1 134539594 134539749 -62655683 - MER20 DNA MER1_type -57 162 2 4 1611 261 0 0 0 chr1 134540306 134540335 -62655097 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1611 201 380 0 11 chr1 134540368 134540461 -62654971 + L2 LINE L2 2678 2769 -650 4 1611 2969 39 39 8 chr1 134540951 134541335 -62654097 - MTA_Mm LTR MaLR 0 396 1 5 1611 7480 73 8 68 chr1 134541335 134542504 -62652928 - MTA_Mm-int LTR MaLR 0 1098 1 5 1611 2966 39 39 8 chr1 134542504 134542888 -62652544 - MTA_Mm LTR MaLR 0 396 1 5 1611 791 281 74 62 chr1 134542967 134543477 -62651955 - Lx8 LINE L1 -2 7471 6964 5 1611 336 48 0 0 chr1 134543486 134543528 -62651904 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1611 4217 162 88 11 chr1 134543712 134544538 -62650894 - RMER19B LTR ERVK -12 890 1 5 1611 189 234 0 0 chr1 134544974 134545015 -62650417 - MIR SINE MIR -153 115 72 5 1611 1093 276 115 28 chr1 134545120 134545660 -62649772 + L1MB5 LINE L1 5580 6166 -8 5 1611 713 217 216 126 chr1 134546078 134546426 -62649006 - MTE2a LTR MaLR 0 379 1 5 1611 183 324 125 0 chr1 134546999 134547135 -62648297 + MIR SINE MIR 18 170 -92 5 1611 354 313 193 41 chr1 134547788 134548280 -62647152 + L1MC1 LINE L1 5743 6333 0 5 1611 317 303 94 35 chr1 134548309 134548480 -62646952 - L2b LINE L2 -216 3159 2979 5 1611 258 314 29 19 chr1 134549032 134549136 -62646296 + MTEa LTR MaLR 275 379 0 6 1611 944 85 270 6 chr1 134551003 134551181 -62644251 + URR1B DNA MER1_type 1 225 0 6 1611 538 249 8 0 chr1 134553542 134553782 -62641650 + (TA)n Simple_repeat Simple_repeat 1 242 0 6 1611 304 320 80 0 chr1 134553849 134553974 -62641458 - ORR1E LTR MaLR -223 136 2 6 1611 440 297 89 30 chr1 134554669 134554905 -62640527 + L1MB7 LINE L1 5748 5997 -187 6 1611 711 157 0 0 chr1 134555181 134555296 -62640136 + B1_Mur4 SINE Alu 3 117 -33 6 1611 753 155 8 15 chr1 134555352 134555483 -62639949 + B3 SINE B2 1 130 -86 6 1611 207 0 0 0 chr1 134555518 134555541 -62639891 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1611 528 16 0 0 chr1 134555541 134555601 -62639831 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1611 262 256 75 32 chr1 134556701 134556794 -62638638 + B1F2 SINE Alu 21 117 0 6 1611 864 81 40 23 chr1 134557714 134557890 -62637542 + (TATG)n Simple_repeat Simple_repeat 1 179 0 7 1611 2373 70 16 12 chr1 134558315 134558635 -62636797 - ORR1A4 LTR MaLR -8 321 1 7 1611 8353 133 123 101 chr1 134558635 134558785 -62636647 - ORR1A4-int LTR MaLR 0 1963 1814 7 1611 1325 14 0 0 chr1 134558785 134558932 -62636500 + B1_Mus2 SINE Alu 1 147 0 7 1611 8353 133 123 101 chr1 134558932 134560701 -62634731 - ORR1A4-int LTR MaLR -150 1813 1 7 1611 2135 107 6 76 chr1 134560701 134561055 -62634377 - ORR1A4 LTR MaLR 0 329 1 7 1611 326 236 51 92 chr1 134562803 134562901 -62632531 + MTEb LTR MaLR 1 94 -285 7 1611 232 225 0 0 chr1 134562866 134562906 -62632526 + MLT2B5 LTR ERVL 70 109 -492 7 1611 247 277 203 61 chr1 134562973 134563219 -62632213 + MTEb LTR MaLR 79 359 0 7 1611 787 107 0 26 chr1 134563238 134563353 -62632079 - RMER10B LTR ERVL 0 398 287 7 1611 432 0 0 0 chr1 134563353 134563401 -62632031 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1611 1110 88 0 0 chr1 134563403 134563551 -62631881 - RMER10B LTR ERVL -206 192 45 7 1611 257 288 0 0 chr1 134563641 134563700 -62631732 + L1MC4a LINE L1 5595 5653 -2229 7 1611 329 316 124 58 chr1 134563752 134563977 -62631455 + L1MC4a LINE L1 5877 6116 -1766 7 1611 381 240 130 0 chr1 134564224 134564324 -62631108 + PB1D10 SINE Alu 1 113 -4 7 1611 306 50 0 0 chr1 134564585 134564625 -62630807 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 7 1611 2162 145 88 37 chr1 134564965 134565396 -62630036 + RLTR11B LTR ERVK 1 453 0 8 1611 24 32 0 0 chr1 134566021 134566052 -62629380 + AT_rich Low_complexity Low_complexity 1 31 0 8 1611 348 351 90 0 chr1 134566091 134566313 -62629119 - L1MC4a LINE L1 -2009 5873 5632 8 1611 283 287 268 8 chr1 134566367 134566490 -62628942 - RSINE1 SINE B4 -8 157 3 8 1611 531 279 100 68 chr1 134567111 134567404 -62628028 + B4 SINE B4 2 269 -23 8 1611 306 0 0 0 chr1 134567405 134567439 -62627993 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 1611 1144 254 128 3 chr1 134567707 134568066 -62627366 + Lx8 LINE L1 6189 6592 -881 8 1611 793 264 64 66 chr1 134568101 134568341 -62627091 + L1MD LINE L1 3475 3725 -2421 8 1611 711 168 93 14 chr1 134568341 134568480 -62626952 + B1_Mur4 SINE Alu 1 150 0 8 1611 793 264 64 66 chr1 134568480 134568632 -62626800 + L1MD LINE L1 3726 3866 -2280 8 1611 2568 119 38 3 chr1 134568734 134569104 -62626328 + MTC LTR MaLR 39 421 0 8 1611 775 276 53 80 chr1 134569104 134569442 -62625990 + L1MD LINE L1 4101 4421 -1725 8 1611 530 255 43 7 chr1 134569442 134569580 -62625852 + B1F SINE Alu 1 143 -6 9 1611 775 276 53 80 chr1 134569580 134569657 -62625775 + L1MD LINE L1 4422 4486 -1660 8 1611 1510 62 0 25 chr1 134569657 134569855 -62625577 + B2_Mm2 SINE B2 3 195 0 9 1611 775 276 53 80 chr1 134569855 134570148 -62625284 + L1MD LINE L1 4487 4791 -1355 8 1611 1762 156 66 10 chr1 134570575 134570880 -62624552 - Lx4A LINE L1 0 7058 6737 9 1611 375 355 68 8 chr1 134570964 134571214 -62624218 + L2a LINE L2 2172 2436 -983 9 1611 266 292 81 38 chr1 134571326 134571486 -62623946 + L2a LINE L2 3181 3347 -79 9 1611 244 349 30 38 chr1 134571509 134571640 -62623792 + MT2A LTR ERVL 8 137 -396 9 1611 1167 246 129 3 chr1 134571530 134571848 -62623584 + MTEa LTR MaLR 22 379 0 9 1611 180 0 0 0 chr1 134572076 134572096 -62623336 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 1611 324 0 0 0 chr1 134572107 134572143 -62623289 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1611 571 186 42 0 chr1 134572143 134572261 -62623171 - RSINE1 SINE B4 -41 124 2 9 1611 1231 41 0 14 chr1 134572525 134572673 -62622759 - B1_Mm SINE Alu 0 147 2 9 1611 844 221 48 29 chr1 134574255 134574465 -62620967 + B3 SINE B2 2 215 -1 1 1611 276 309 20 105 chr1 134574498 134574650 -62620782 + MIR SINE MIR 7 145 -117 1 1611 481 61 0 0 chr1 134576173 134576239 -62619193 + B1_Mur4 SINE Alu 85 150 0 1 1611 252 280 0 0 chr1 134576374 134576424 -62619008 - ZP3AR Satellite Satellite -121 91 42 1 1611 365 282 64 8 chr1 134576437 134576562 -62618870 - B1F SINE Alu -8 141 10 1 1611 921 150 7 0 chr1 134577516 134577656 -62617776 - B1_Mus2 SINE Alu 0 147 7 1 1611 281 279 6 16 chr1 134577809 134577904 -62617528 + ID4 SINE ID 13 107 -45 1 1611 305 349 47 0 chr1 134578043 134578149 -62617283 + PB1 SINE Alu 1 111 -16 1 1611 376 351 124 29 chr1 134578335 134578649 -62616783 + MLT1L LTR MaLR 115 458 -152 1 1611 730 340 109 0 chr1 134579007 134579272 -62616160 + MTE2b LTR MaLR 1 294 -85 1 1611 3206 258 82 52 chr1 134579257 134579375 -62616057 + MTE2b-int LTR MaLR 592 722 -858 1 1611 1462 220 30 106 chr1 134579375 134579781 -62615651 + MTE2a LTR MaLR 1 375 -4 1 1611 3206 258 82 52 chr1 134579781 134580448 -62614984 + MTE2b-int LTR MaLR 723 1411 -169 1 1611 826 60 248 0 chr1 134580448 134580565 -62614867 - B1_Mm SINE Alu 0 147 2 1 1611 3206 258 82 52 chr1 134580565 134580711 -62614721 + MTE2b-int LTR MaLR 1412 1552 -28 1 1611 1371 209 79 49 chr1 134580720 134581088 -62614344 + MTE2b LTR MaLR 1 379 0 1 1611 513 253 139 5 chr1 134581958 134582145 -62613287 - MER33 DNA MER1_type -112 212 1 1 1611 1209 61 0 20 chr1 134582942 134583092 -62612340 - B1_Mus1 SINE Alu 0 148 2 1 1611 396 310 167 75 chr1 134583628 134583946 -62611486 + LTR16E2 LTR ERVL 220 566 -2 1 1611 189 0 0 0 chr1 134585020 134585041 -62610391 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1611 910 187 115 0 chr1 134585254 134585436 -62609996 - B3 SINE B2 -13 203 1 1 1611 180 0 0 0 chr1 134585455 134585475 -62609957 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1611 1706 21 0 0 chr1 134585491 134585683 -62609749 - B2_Mm1a SINE B2 0 193 2 1 1611 581 303 58 119 chr1 134586231 134586341 -62609091 - B4A SINE B4 0 292 203 1 1611 496 164 202 16 chr1 134586341 134586465 -62608967 - B1_Mur1 SINE Alu -1 148 2 1 1611 581 303 58 119 chr1 134586465 134586665 -62608767 - B4A SINE B4 -90 202 1 1 1611 245 342 0 0 chr1 134586974 134587050 -62608382 + PB1D10 SINE Alu 37 112 -5 1 1611 397 273 93 50 chr1 134587353 134587492 -62607940 + MIR3 SINE MIR 37 181 -27 1 1611 313 243 80 45 chr1 134587510 134587622 -62607810 + MER5A DNA MER1_type 31 146 -43 1 1611 338 355 81 25 chr1 134587781 134588102 -62607330 + MARNA DNA Mariner 15 353 -233 1 1611 1828 128 40 21 chr1 134588181 134588509 -62606923 + RMER1A Other Other 679 1012 -18 1 1611 913 228 71 34 chr1 134588509 134588804 -62606628 + RLTR15 LTR ERVK 1 306 -53 1 1611 537 58 0 0 chr1 134588816 134588885 -62606547 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 1611 180 0 0 0 chr1 134588918 134588938 -62606494 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1611 300 276 85 9 chr1 134589894 134590000 -62605432 + PB1 SINE Alu 11 124 -3 1 1611 242 349 89 53 chr1 134591510 134591859 -62603573 - L2a LINE L2 -1 3425 3017 1 1611 1333 227 152 28 chr1 134591982 134592404 -62603028 - MER31A LTR ERV1 -7 478 5 1 1611 398 317 0 9 chr1 134592427 134592532 -62602900 - ID_B1 SINE B4 -35 189 86 1 1611 325 268 125 0 chr1 134594603 134594715 -62600717 + L1MB4 LINE L1 5665 5790 -393 1 1611 382 312 100 15 chr1 134594791 134595009 -62600423 + MTEb LTR MaLR 113 365 -14 1 1611 2405 107 0 3 chr1 134595399 134595726 -62599706 + ORR1A3 LTR MaLR 1 326 0 1 1611 28 0 0 0 chr1 134595743 134595771 -62599661 + AT_rich Low_complexity Low_complexity 1 28 0 1 1611 7450 55 5 12 chr1 134595776 134597276 -62598156 - L1Md_F2 LINE L1 0 6582 5096 1 1611 385 294 20 27 chr1 134597671 134597818 -62597614 + L1MB4 LINE L1 5878 6023 -157 1 1611 461 17 17 0 chr1 134598262 134598320 -62597112 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1611 235 272 117 102 chr1 134598510 134598784 -62596648 + L1ME1 LINE L1 5880 6157 -22 1 1611 236 258 62 73 chr1 134598977 134599073 -62596359 - LTR81A LTR ERV1? -431 919 825 1 1611 396 273 74 88 chr1 134598992 134599209 -62596223 + MT2B LTR ERVL 43 256 -345 1 1611 1101 44 0 0 chr1 134599120 134599255 -62596177 + B1_Mm SINE Alu 13 147 0 1 1611 434 213 91 84 chr1 134599121 134599275 -62596157 + B4A SINE B4 99 253 -39 1 1611 543 238 0 8 chr1 134599275 134599402 -62596030 + Lx2B LINE L1 6869 6994 -6 1 1611 322 340 89 13 chr1 134599779 134599937 -62595495 + MIRb SINE MIR 51 220 -48 1 1611 29 28 0 0 chr1 134600512 134600548 -62594884 + GC_rich Low_complexity Low_complexity 1 36 0 1 1611 238 346 104 22 chr1 134601520 134601613 -62593819 + MIRm SINE MIR 50 154 -122 1 1611 1958 152 29 39 chr1 134601613 134601813 -62593619 + RMER17C LTR ERVK 1 199 -211 1 1611 324 0 0 0 chr1 134601813 134601849 -62593583 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1611 1958 152 29 39 chr1 134601849 134602060 -62593372 + RMER17C LTR ERVK 200 408 -2 1 1611 238 346 104 22 chr1 134602060 134602149 -62593283 + MIRm SINE MIR 155 247 -29 1 1611 1216 61 0 13 chr1 134604620 134604758 -62590674 + B1_Mm SINE Alu 1 138 -9 1 1611 207 0 0 0 chr1 134604758 134604781 -62590651 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1611 312 294 102 16 chr1 134604861 134604989 -62590443 - MER2 DNA MER2_type -154 191 53 1 1611 293 327 49 104 chr1 134605147 134605311 -62590121 + MIR SINE MIR 34 188 -74 1 1611 792 280 99 15 chr1 134606822 134607156 -62588276 + MTEb LTR MaLR 18 379 0 1 1611 228 210 48 0 chr1 134607691 134607753 -62587679 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1611 710 312 105 49 chr1 134608977 134609605 -62585827 + L1MB5 LINE L1 4644 5306 -840 1 1611 675 335 100 8 chr1 134609620 134609999 -62585433 + L1MB5 LINE L1 5408 5821 -359 1 1611 309 200 0 0 chr1 134610076 134610136 -62585296 + L1MB5 LINE L1 5814 5873 -301 1 1611 592 161 0 0 chr1 134610136 134610229 -62585203 + B3 SINE B2 1 93 -123 1 1611 249 322 39 26 chr1 134610258 134610411 -62585021 + L1MB5 LINE L1 5868 6022 -158 1 1612 431 309 64 119 chr1 134611717 134612062 -62583370 - MARNA DNA Mariner -22 564 239 1 1612 505 283 158 48 chr1 134612340 134612778 -62582654 + L1MB5 LINE L1 5584 6069 -105 1 1612 387 0 0 0 chr1 134612879 134612922 -62582510 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1612 2168 224 20 14 chr1 134612952 134613451 -62581981 + RLTR11A2 LTR ERVK 1 502 -25 1 1612 634 311 79 4 chr1 134615307 134615559 -62579873 + MLT1B LTR MaLR 113 383 -7 1 1612 533 310 98 30 chr1 134616113 134616421 -62579011 + L1MB5 LINE L1 5744 6077 -97 1 1612 2788 112 97 8 chr1 134616421 134616906 -62578526 - RLTR11A LTR ERVK 0 528 1 1 1612 533 310 98 30 chr1 134616906 134616966 -62578466 + L1MB5 LINE L1 6078 6137 -37 1 1612 275 282 0 37 chr1 134616970 134617051 -62578381 - ID4 SINE ID -1 82 5 1 1612 361 250 94 0 chr1 134617053 134617181 -62578251 - ID_B1 SINE B4 -3 221 82 1 1612 423 0 0 0 chr1 134618275 134618322 -62577110 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1612 402 146 0 0 chr1 134618322 134618418 -62577014 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1612 249 175 35 35 chr1 134618544 134618716 -62576716 + (TTGGGG)n Simple_repeat Simple_repeat 5 176 0 1 1612 476 292 0 6 chr1 134618737 134618916 -62576516 + (TTGGGG)n Simple_repeat Simple_repeat 3 180 0 1 1612 404 63 32 0 chr1 134619539 134619602 -62575830 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 1 1612 690 211 0 0 chr1 134619642 134619817 -62575615 + CT-rich Low_complexity Low_complexity 2 176 0 1 1612 328 287 53 30 chr1 134620388 134620521 -62574911 - B1F1 SINE Alu -1 148 13 1 1612 558 251 71 18 chr1 134621146 134621316 -62574116 - B3A SINE B2 -18 180 2 1 1612 575 221 37 22 chr1 134621318 134621452 -62573980 - B1F SINE Alu -1 148 13 1 1612 33 73 0 0 chr1 134621529 134621597 -62573835 + AT_rich Low_complexity Low_complexity 1 68 0 1 1612 26 0 0 0 chr1 134621672 134621698 -62573734 + AT_rich Low_complexity Low_complexity 1 26 0 1 1612 231 331 238 6 chr1 134621873 134622037 -62573395 - Charlie21a DNA MER1_type -598 615 414 1 1612 286 270 136 21 chr1 134622620 134622760 -62572672 + MER5A DNA MER1_type 22 177 -12 1 1612 211 323 36 24 chr1 134623602 134623696 -62571736 + MIRc SINE MIR 32 129 -139 1 1612 276 30 0 0 chr1 134624051 134624084 -62571348 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1612 636 50 0 0 chr1 134624084 134624163 -62571269 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1612 387 266 111 25 chr1 134625304 134625466 -62569966 - MIR SINE MIR -74 188 13 1 1612 278 268 0 35 chr1 134630094 134630179 -62565253 - MER3 DNA MER1_type 0 209 128 1 1612 347 190 3 6 chr1 134630241 134630313 -62565119 - RSINE1 SINE B4 -85 80 9 1 1612 314 225 28 14 chr1 134630329 134630401 -62565031 + PB1D10 SINE Alu 17 89 -28 1 1612 256 398 0 0 chr1 134631112 134631220 -62564212 + MIR3 SINE MIR 62 169 -39 1 1612 220 276 13 26 chr1 134632984 134633062 -62562370 + G-rich Low_complexity Low_complexity 6 82 0 1 1612 358 376 60 18 chr1 134633710 134633927 -62561505 + MIRb SINE MIR 25 250 -18 1 1612 342 0 0 0 chr1 134636359 134636397 -62559035 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1612 531 0 0 0 chr1 134636397 134636455 -62558977 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1612 249 177 38 0 chr1 134636970 134637049 -62558383 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1612 24 77 0 0 chr1 134638374 134638426 -62557006 + GC_rich Low_complexity Low_complexity 1 52 0 1 1612 207 0 0 0 chr1 134638751 134638774 -62556658 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1612 259 261 15 0 chr1 134639578 134639643 -62555789 - FordPrefect_a DNA Tip100 -377 131 66 1 1612 338 228 63 0 chr1 134639931 134640010 -62555422 - B3 SINE B2 -5 211 128 1 1612 623 230 76 41 chr1 134640177 134640349 -62555083 + B3A SINE B2 3 180 -18 1 1612 696 170 11 7 chr1 134640350 134640630 -62554802 + (CA)n Simple_repeat Simple_repeat 1 281 0 1 1612 351 293 151 19 chr1 134641386 134641598 -62553834 + MER77 LTR ERVL 368 607 0 1 1612 203 229 16 0 chr1 134642460 134642521 -62552911 + G-rich Low_complexity Low_complexity 2 63 0 2 1612 340 231 55 46 chr1 134642904 134643013 -62552419 + PB1D7 SINE Alu 2 111 -9 2 1612 180 0 0 0 chr1 134643470 134643490 -62551942 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1612 340 316 0 1 chr1 134643503 134643603 -62551829 - Charlie5 DNA MER1_type -73 136 1 1 1612 809 249 6 0 chr1 134643844 134644021 -62551411 - B3A SINE B2 -16 182 5 2 1612 252 0 0 0 chr1 134645364 134645392 -62550040 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1612 283 291 94 23 chr1 134645420 134645633 -62549799 - MER63B DNA AcHobo -11 425 190 2 1612 282 279 13 0 chr1 134645659 134645738 -62549694 - ID4 SINE ID 0 83 4 2 1612 945 96 0 64 chr1 134646613 134646769 -62548663 + B1_Mus1 SINE Alu 1 146 -2 2 1612 1077 274 8 88 chr1 134647937 134647966 -62547466 - MTE2a LTR MaLR -14 365 339 2 1612 811 53 18 0 chr1 134647966 134648079 -62547353 + (GA)n Simple_repeat Simple_repeat 2 116 0 2 1612 1077 274 8 88 chr1 134648079 134648446 -62546986 - MTE2a LTR MaLR -41 338 1 2 1612 1015 328 43 20 chr1 134648588 134648983 -62546449 - MER77 LTR ERVL -150 457 54 2 1612 2019 137 57 25 chr1 134650084 134650450 -62544982 + ORR1C1 LTR MaLR 1 378 0 2 1612 196 164 89 18 chr1 134650726 134650782 -62544650 - MER5B DNA MER1_type -10 168 109 2 1612 1007 147 108 30 chr1 134650960 134651163 -62544269 + URR1A DNA MER1_type 1 219 -7 2 1612 284 225 28 0 chr1 134651219 134651290 -62544142 + ID4_ SINE ID 9 81 -2 2 1612 314 259 47 40 chr1 134651304 134651488 -62543944 + L1MEf LINE L1 2944 3062 -3944 2 1612 367 312 140 5 chr1 134651485 134651519 -62543913 + L1MEf LINE L1 3387 3437 -3569 2 1612 552 42 0 0 chr1 134651519 134651590 -62543842 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1612 367 312 140 5 chr1 134651590 134651755 -62543677 + L1MEf LINE L1 3438 3613 -3393 2 1612 318 259 12 0 chr1 134651752 134651833 -62543599 + L1MD LINE L1 5627 5708 -651 2 1612 1664 117 166 0 chr1 134651833 134652141 -62543291 + ORR1B2 LTR MaLR 1 359 -8 2 1612 1059 181 43 28 chr1 134652638 134652849 -62542583 + B3 SINE B2 1 214 -2 2 1612 2141 174 10 13 chr1 134653132 134653527 -62541905 - ORR1B1 LTR MaLR 0 394 1 2 1612 515 301 65 7 chr1 134653594 134653748 -62541684 + RSINE1 SINE B4 1 163 -2 2 1612 393 22 0 0 chr1 134653749 134653795 -62541637 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1612 396 0 0 0 chr1 134653795 134653838 -62541594 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1612 906 157 0 0 chr1 134653862 134654021 -62541411 + GA-rich Low_complexity Low_complexity 2 160 0 2 1612 940 162 196 0 chr1 134654034 134654213 -62541219 + B3 SINE B2 3 216 0 2 1612 876 120 18 171 chr1 134654314 134654536 -62540896 + B2_Mm2 SINE B2 1 188 -7 2 1612 274 335 89 0 chr1 134655035 134655193 -62540239 + MER112 DNA MER1_type 90 261 0 2 1612 288 269 94 19 chr1 134655876 134655982 -62539450 + MER63B DNA AcHobo 10 123 -313 2 1612 302 322 0 65 chr1 134656090 134656195 -62539237 + MER63B DNA AcHobo 293 397 -39 2 1612 198 0 0 0 chr1 134656195 134656217 -62539215 + (CTG)n Simple_repeat Simple_repeat 1 22 0 2 1612 302 322 0 65 chr1 134656217 134656264 -62539168 + MER63B DNA AcHobo 398 435 -1 2 1612 1298 65 20 88 chr1 134656799 134657003 -62538429 - B2_Mm2 SINE B2 -4 191 2 2 1612 384 253 113 86 chr1 134657646 134657832 -62537600 - MTEa LTR MaLR -188 191 1 2 1612 690 280 120 8 chr1 134657884 134658125 -62537307 - MTE-int LTR MaLR -1048 532 265 2 1612 229 245 0 19 chr1 134658171 134658225 -62537207 - MTE2a LTR MaLR -164 215 163 2 1612 1566 27 0 0 chr1 134658228 134658415 -62537017 - B2_Mm1a SINE B2 -5 188 2 2 1612 596 250 0 27 chr1 134658450 134658598 -62536834 + B1_Mur1 SINE Alu 1 144 -5 2 1612 781 230 39 10 chr1 134658624 134658830 -62536602 - B3 SINE B2 0 216 5 2 1612 404 309 24 79 chr1 134658931 134659096 -62536336 - B4 SINE B4 -136 156 1 2 1612 1269 188 71 32 chr1 134659256 134659537 -62535895 - RMER16 LTR ERVK 0 533 242 2 1612 531 0 0 0 chr1 134659629 134659688 -62535744 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1612 780 145 80 19 chr1 134659688 134659850 -62535582 - B2_Mm2 SINE B2 -22 173 2 2 1612 636 293 143 8 chr1 134660070 134660321 -62535111 - B4A SINE B4 0 292 8 2 1612 252 0 0 0 chr1 134660446 134660474 -62534958 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1612 725 78 0 0 chr1 134660488 134660591 -62534841 - B2_Mm2 SINE B2 -92 103 1 2 1612 296 331 83 15 chr1 134661355 134661563 -62533869 - L2c LINE L2 -18 3408 3162 2 1612 387 0 0 0 chr1 134662202 134662245 -62533187 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1612 220 243 82 92 chr1 134663287 134663388 -62532044 - MIRm SINE MIR -90 118 18 2 1612 267 146 0 0 chr1 134663716 134663757 -62531675 - PB1D10 SINE Alu -14 103 63 2 1612 244 337 35 11 chr1 134664305 134664392 -62531040 + L2b LINE L2 3273 3361 -14 2 1612 325 324 73 41 chr1 134664502 134664721 -62530711 + MLT2B1 LTR ERVL 20 245 -275 2 1612 2671 64 0 3 chr1 134664782 134665129 -62530303 - ORR1A1 LTR MaLR 0 346 1 2 1612 335 335 111 22 chr1 134665381 134665561 -62529871 + MLT2B1 LTR ERVL 323 518 -49 2 1612 182 343 0 28 chr1 134665911 134665983 -62529449 - L4 LINE RTE -184 1845 1776 2 1612 595 289 23 47 chr1 134666146 134666265 -62529167 - B4A SINE B4 -83 209 92 2 1612 708 244 74 5 chr1 134666265 134666467 -62528965 - B3 SINE B2 0 216 1 2 1612 595 289 23 47 chr1 134666467 134666561 -62528871 - B4A SINE B4 -201 91 1 2 1612 2897 132 18 76 chr1 134667016 134667571 -62527861 - RLTR28 LTR ERVL -1 523 1 2 1612 4115 76 11 0 chr1 134668532 134669070 -62526362 + L1_Mus4 LINE L1 6087 6630 -6 2 1612 419 76 45 0 chr1 134669107 134669173 -62526259 + (GGAGAA)n Simple_repeat Simple_repeat 1 69 0 2 1612 1500 0 0 16 chr1 134669173 134669356 -62526076 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1612 283 192 0 0 chr1 134669561 134669613 -62525819 + RMER15 LTR ERVL 403 454 -121 2 1612 507 195 16 81 chr1 134669839 134669962 -62525470 + ORR1E LTR MaLR 1 115 -244 2 1612 211 306 0 127 chr1 134670132 134670203 -62525229 - ID4_ SINE ID -21 62 1 2 1612 835 206 0 0 chr1 134670235 134670376 -62525056 - B1F SINE Alu -8 141 1 2 1612 247 273 65 122 chr1 134671118 134671420 -62524012 - MTD LTR MaLR -15 404 72 2 1612 636 206 34 41 chr1 134671444 134671591 -62523841 + RSINE1 SINE B4 3 148 -17 2 1612 573 213 52 29 chr1 134671979 134672153 -62523279 - L1ME4a LINE L1 -4 6120 5943 2 1612 255 350 59 108 chr1 134672197 134672485 -62522947 - MLT1J2 LTR MaLR -19 392 119 2 1612 2371 126 13 33 chr1 134672492 134672885 -62522547 + RMER4A LTR ERVK 1 385 -81 2 1612 301 176 0 0 chr1 134672911 134672962 -62522470 - ORR1B1 LTR MaLR 0 329 279 2 1612 947 138 43 8 chr1 134672931 134673115 -62522317 - ORR1B1 LTR MaLR -232 162 1 2 1612 668 143 49 32 chr1 134673115 134673212 -62522220 + RMER4A LTR ERVK 368 466 0 2 1612 310 242 52 4 chr1 134673214 134673283 -62522149 - MLT1J2 LTR MaLR -358 154 55 2 1612 413 0 39 0 chr1 134673594 134673646 -62521786 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 2 1612 330 291 82 7 chr1 134673646 134673781 -62521651 - B3 SINE B2 -37 179 35 2 1612 429 235 0 29 chr1 134674384 134674489 -62520943 + PB1D9 SINE Alu 17 118 -2 2 1612 192 125 0 0 chr1 134674496 134674528 -62520904 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1612 50 31 0 0 chr1 134674537 134674601 -62520831 + AT_rich Low_complexity Low_complexity 1 64 0 2 1612 347 204 156 0 chr1 134674690 134674857 -62520575 + L1M5 LINE L1 5273 5465 -979 2 1612 872 297 109 54 chr1 134675394 134676136 -62519296 + L1ME1 LINE L1 5380 6171 -8 2 1612 21 0 0 0 chr1 134676136 134676157 -62519275 + AT_rich Low_complexity Low_complexity 1 21 0 2 1612 445 215 158 28 chr1 134676924 134677101 -62518331 - MLT1K LTR MaLR -12 583 384 2 1612 602 240 8 0 chr1 134677321 134677446 -62517986 + B3 SINE B2 3 128 -88 2 1612 213 39 0 0 chr1 134677490 134677516 -62517916 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1612 522 279 0 9 chr1 134679059 134679171 -62516261 + RSINE1 SINE B4 3 113 -52 2 1612 189 0 0 0 chr1 134679185 134679206 -62516226 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1612 396 0 0 0 chr1 134679216 134679260 -62516172 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1612 332 403 9 38 chr1 134679362 134679679 -62515753 + ERVL-B4-int LTR ERVL 840 1147 -4520 2 1612 546 289 155 0 chr1 134680022 134680299 -62515133 - MER33 DNA MER1_type -4 320 1 2 1612 868 333 118 51 chr1 134680362 134680976 -62514456 + ERVL-B4-int LTR ERVL 1752 2398 -3316 2 1612 1043 111 0 0 chr1 134680976 134681120 -62514312 + B1_Mus1 SINE Alu 5 148 0 2 1612 868 333 118 51 chr1 134681120 134681235 -62514197 + ERVL-B4-int LTR ERVL 2399 2529 -3185 2 1612 1546 64 5 0 chr1 134681235 134681423 -62514009 + B2_Mm1t SINE B2 1 189 -4 2 1612 868 333 106 45 chr1 134681423 134681855 -62513577 + ERVL-B4-int LTR ERVL 2530 2933 -2734 2 1612 461 342 7 0 chr1 134682015 134682170 -62513262 + ERVL-B4-int LTR ERVL 3350 3505 -2209 2 1612 665 325 120 54 chr1 134682315 134683325 -62512107 + ERVL-B4-int LTR ERVL 3633 4834 -923 2 1612 255 234 76 61 chr1 134683388 134683520 -62511912 + ERVL-B4-int LTR ERVL 4815 4948 -719 2 1612 1158 122 0 0 chr1 134684490 134684670 -62510762 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1612 213 121 0 0 chr1 134685317 134685350 -62510082 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1612 6226 116 14 42 chr1 134685687 134685982 -62509450 - L1_Mur2 LINE L1 -883 4994 4735 2 1612 1212 63 0 0 chr1 134685982 134686125 -62509307 - B1_Mus1 SINE Alu -5 143 1 2 1612 6226 116 14 42 chr1 134686125 134686857 -62508575 - L1_Mur2 LINE L1 -1143 4734 3996 2 1612 2689 130 56 11 chr1 134686854 134687304 -62508128 + Lx3C LINE L1 5004 5473 -413 2 1612 8015 154 16 4 chr1 134687931 134689406 -62506026 + Lx3C LINE L1 5485 6976 0 2 1612 249 33 0 0 chr1 134689498 134689528 -62505904 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2 1612 1266 90 17 11 chr1 134689538 134689718 -62505714 + B2_Mm2 SINE B2 1 181 -14 2 1612 457 331 8 38 chr1 134689732 134689864 -62505568 - RSINE1 SINE B4 -14 151 24 2 1612 2236 74 47 19 chr1 134689874 134690191 -62505241 - ORR1A3 LTR MaLR 0 326 1 2 1612 482 0 17 0 chr1 134691019 134691077 -62504355 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1612 281 26 26 0 chr1 134691077 134691114 -62504318 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1612 204 337 60 0 chr1 134691116 134691199 -62504233 - MIRb SINE MIR -62 206 119 2 1612 21 0 0 0 chr1 134691346 134691367 -62504065 + AT_rich Low_complexity Low_complexity 1 21 0 2 1612 967 186 56 51 chr1 134691661 134691728 -62503704 - B3 SINE B2 0 216 158 2 1612 2237 141 65 5 chr1 134691728 134692100 -62503332 - ORR1B1 LTR MaLR 0 394 1 3 1612 967 186 56 51 chr1 134692100 134692247 -62503185 - B3 SINE B2 -59 157 1 2 1612 231 234 15 45 chr1 134692254 134692321 -62503111 - PB1 SINE Alu -10 117 53 3 1612 274 321 15 15 chr1 134692408 134692423 -62503009 - L1MEe LINE L1 -4926 2408 2394 3 1612 1642 145 185 19 chr1 134692423 134692589 -62502843 - ORR1C1 LTR MaLR 0 378 179 3 1612 1428 24 0 0 chr1 134692589 134692757 -62502675 + (GA)n Simple_repeat Simple_repeat 1 168 0 3 1612 1642 145 185 19 chr1 134692757 134692914 -62502518 - ORR1C1 LTR MaLR -200 178 1 3 1612 391 286 21 2 chr1 134692914 134693074 -62502358 - L1MEe LINE L1 -4536 2490 2276 3 1612 230 271 143 0 chr1 134693370 134693440 -62501992 - ID4_ SINE ID 0 83 4 3 1612 528 298 81 17 chr1 134693479 134693653 -62501779 - B3A SINE B2 -13 185 1 3 1612 385 248 27 95 chr1 134695644 134695791 -62499641 + B3 SINE B2 50 189 -27 3 1612 200 314 46 11 chr1 134695798 134695885 -62499547 - MIR SINE MIR -111 151 62 3 1612 496 299 67 17 chr1 134696099 134696279 -62499153 + MER58A DNA MER1_type 30 218 -6 3 1612 589 317 140 50 chr1 134697418 134697781 -62497651 - Tigger13a DNA MER2_type -120 651 241 3 1612 533 207 186 75 chr1 134697781 134697969 -62497463 + B3 SINE B2 1 209 -7 3 1612 589 317 140 50 chr1 134697969 134698069 -62497363 - Tigger13a DNA MER2_type -531 240 146 3 1612 3148 51 10 8 chr1 134698290 134698685 -62496747 - MTA_Mm LTR MaLR 0 396 1 3 1612 972 74 5 98 chr1 134698734 134698928 -62496504 - Lx LINE L1 -7 6647 6472 3 1612 255 226 15 75 chr1 134699601 134699668 -62495764 + MIRb SINE MIR 20 82 -186 3 1612 189 242 15 30 chr1 134699693 134699825 -62495607 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 1612 301 237 66 0 chr1 134699880 134699956 -62495476 + MIR SINE MIR 113 193 -69 3 1612 181 286 37 49 chr1 134700112 134700193 -62495239 - L3 LINE CR1 -3540 949 870 3 1612 492 276 70 47 chr1 134700308 134700521 -62494911 + MLT1F1 LTR MaLR 7 224 -345 3 1612 330 290 112 27 chr1 134700534 134700722 -62494710 + MLT1F1 LTR MaLR 266 469 -79 3 1612 315 317 51 140 chr1 134701506 134701763 -62493669 + MLT1J LTR MaLR 111 344 -168 3 1612 265 283 80 12 chr1 134701897 134701985 -62493447 - MIRb SINE MIR -62 200 109 3 1612 252 0 0 0 chr1 134702125 134702153 -62493279 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1612 513 0 0 0 chr1 134702153 134702209 -62493223 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1612 227 274 0 75 chr1 134702746 134702813 -62492619 - RMER21B LTR ERV1 -112 835 774 3 1612 653 228 191 42 chr1 134702908 134703123 -62492309 - RMER21B LTR ERV1 -348 494 248 3 1612 1086 57 41 41 chr1 134703295 134703442 -62491990 + B1_Mm SINE Alu 1 147 0 3 1612 453 36 0 0 chr1 134703444 134703499 -62491933 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1612 181 348 56 70 chr1 134703729 134703871 -62491561 - MIRm SINE MIR -126 150 11 3 1612 199 372 44 9 chr1 134704157 134704271 -62491161 - L2c LINE L2 -194 3193 3076 3 1612 343 291 163 19 chr1 134704504 134704774 -62490658 - ERVL-E-int LTR ERVL -1787 3880 3572 3 1612 203 139 56 0 chr1 134708353 134708389 -62487043 + CT-rich Low_complexity Low_complexity 1 38 0 3 1612 501 258 128 52 chr1 134708412 134708558 -62486874 - B3 SINE B2 -5 211 52 3 1612 2878 35 18 6 chr1 134708558 134708900 -62486532 - ORR1A1 LTR MaLR 0 346 1 3 1612 501 258 128 52 chr1 134708900 134708925 -62486507 - B3 SINE B2 -165 51 27 3 1612 2366 204 77 62 chr1 134708925 134709777 -62485655 - RMER1B Other Other -4 1062 16 3 1612 2011 252 21 36 chr1 134709758 134710362 -62485070 - RMER1A Other Other -520 510 1 3 1612 1023 218 255 24 chr1 134710337 134710718 -62484714 - RMER1B Other Other -553 513 45 3 1612 234 219 0 88 chr1 134710886 134710966 -62484466 - B3 SINE B2 -143 73 1 3 1612 312 325 0 130 chr1 134711944 134712075 -62483357 - L2c LINE L2 -1 3386 3273 3 1612 595 162 123 58 chr1 134712589 134712727 -62482705 + B1_Mus1 SINE Alu 2 148 0 3 1612 203 256 0 0 chr1 134712854 134712897 -62482535 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1612 756 244 149 15 chr1 134712940 134713269 -62482163 - L1MB5 LINE L1 -221 5953 5581 3 1612 278 308 179 15 chr1 134713408 134713609 -62481823 + MLT1J2 LTR MaLR 70 303 -145 3 1612 317 220 48 111 chr1 134715901 134716093 -62479339 + MER104 DNA Tc2 1 181 0 3 1612 1037 321 136 50 chr1 134717778 134719418 -62476014 + L1MDa LINE L1 101 1970 -4663 3 1612 365 236 14 0 chr1 134719430 134719502 -62475930 + B3A SINE B2 1 73 -125 3 1612 21 0 0 0 chr1 134719521 134719542 -62475890 + AT_rich Low_complexity Low_complexity 1 21 0 3 1612 379 303 82 14 chr1 134719596 134719743 -62475689 + RSINE1 SINE B4 3 159 -6 3 1612 751 248 59 65 chr1 134719762 134720103 -62475329 + L1MDa LINE L1 1997 2335 -4298 3 1612 347 254 13 27 chr1 134720202 134720248 -62475184 + ORR1B1-int LTR MaLR 607 650 -859 3 1612 1167 56 0 0 chr1 134720248 134720392 -62475040 + B1_Mus2 SINE Alu 4 147 0 3 1612 497 68 0 13 chr1 134720393 134720468 -62474964 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 3 1612 341 219 85 9 chr1 134720479 134720536 -62474896 + L1MDa LINE L1 2468 2523 -4110 3 1612 234 0 0 0 chr1 134720536 134720562 -62474870 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3 1612 341 219 85 9 chr1 134720562 134720610 -62474822 + L1MDa LINE L1 2524 2580 -4053 3 1612 603 167 36 57 chr1 134720611 134720751 -62474681 + B1F SINE Alu 1 137 -12 3 1612 797 245 49 89 chr1 134720829 134721053 -62474379 + B3 SINE B2 2 216 0 3 1612 714 273 97 54 chr1 134721068 134721361 -62474071 + L1MDa LINE L1 2632 2951 -3586 3 1612 1625 36 0 40 chr1 134721361 134721562 -62473870 - B2_Mm1t SINE B2 0 193 1 3 1612 714 273 97 54 chr1 134721562 134721617 -62473815 + L1MDa LINE L1 2952 2995 -3542 3 1612 369 298 62 35 chr1 134721619 134721876 -62473556 - L1MD LINE L1 -2621 3525 3262 3 1612 631 144 0 0 chr1 134721944 134722034 -62473398 + B3 SINE B2 2 91 -125 3 1612 241 204 89 36 chr1 134722215 134722271 -62473161 + PB1D9 SINE Alu 1 59 -61 3 1612 314 0 0 161 chr1 134722272 134722434 -62472998 + (CAGAG)n Simple_repeat Simple_repeat 5 140 0 3 1612 644 148 0 61 chr1 134722437 134722552 -62472880 + B1_Mur2 SINE Alu 42 149 0 3 1612 312 248 62 25 chr1 134722554 134722715 -62472717 + HAL1 LINE L1 1045 1211 -1296 3 1612 190 160 40 0 chr1 134723007 134723057 -62472375 + GA-rich Low_complexity Low_complexity 1 52 0 3 1612 3012 57 16 0 chr1 134723086 134723469 -62471963 + MTB LTR MaLR 9 397 -3 3 1612 761 232 51 13 chr1 134723646 134723882 -62471550 + L1MB8 LINE L1 3620 3864 -2282 3 1612 377 261 0 0 chr1 134724291 134724383 -62471049 + L1MB8 LINE L1 4513 4604 -1542 3 1612 2363 147 102 3 chr1 134724535 134724918 -62470514 + MTC LTR MaLR 1 421 0 3 1612 696 279 98 37 chr1 134725192 134725666 -62469766 + L1MB8 LINE L1 5631 6142 -36 3 1612 456 323 115 6 chr1 134725993 134726158 -62469274 + MT2A LTR ERVL 231 413 -120 3 1612 270 0 0 0 chr1 134726276 134726306 -62469126 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1612 284 103 0 0 chr1 134726307 134726346 -62469086 + MLT2B4 LTR ERVL 518 556 0 3 1612 512 311 88 48 chr1 134726347 134726641 -62468791 + HAL1 LINE L1 1741 2046 -461 3 1612 1089 223 28 9 chr1 134727174 134727387 -62468045 + ID_B1 SINE B4 8 224 0 3 1612 1042 224 24 14 chr1 134729352 134729565 -62465867 + B3 SINE B2 2 216 0 3 1612 351 279 105 0 chr1 134729761 134729847 -62465585 + PB1D10 SINE Alu 3 97 -20 3 1612 919 249 86 107 chr1 134729946 134730329 -62465103 - MTE2a LTR MaLR -3 376 2 3 1612 1022 279 97 31 chr1 134731329 134731701 -62463731 - MTE2a LTR MaLR -15 404 18 3 1612 1669 32 0 0 chr1 134731833 134732023 -62463409 - B2_Mm1a SINE B2 -1 192 3 3 1612 187 29 0 79 chr1 134732026 134732064 -62463368 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1612 257 343 95 12 chr1 134732614 134732782 -62462650 - L3 LINE CR1 -2163 2326 2145 3 1612 378 0 0 0 chr1 134734033 134734075 -62461357 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1612 365 308 151 36 chr1 134734602 134734821 -62460611 + MER31A LTR ERV1 238 481 -4 3 1612 314 278 0 0 chr1 134734891 134734963 -62460469 + MER58B DNA MER1_type 21 92 -249 3 1612 302 267 78 10 chr1 134735195 134735297 -62460135 - Tigger5 DNA MER2_type -7 2399 2291 3 1612 839 335 16 0 chr1 134735303 134735557 -62459875 + MER58B DNA MER1_type 75 332 -9 3 1612 486 200 72 9 chr1 134735562 134735673 -62459759 + PB1D9 SINE Alu 3 120 0 3 1612 227 270 32 0 chr1 134735678 134735741 -62459691 + GA-rich Low_complexity Low_complexity 2 66 0 3 1612 307 262 155 23 chr1 134735838 134735967 -62459465 + ORR1E LTR MaLR 43 188 -171 3 1612 291 54 0 0 chr1 134735982 134736019 -62459413 + (TGG)n Simple_repeat Simple_repeat 1 37 0 3 1612 872 28 0 0 chr1 134736019 134736122 -62459310 - B1_Mus1 SINE Alu -2 146 44 3 1612 999 265 77 18 chr1 134736639 134736977 -62458455 + MER63D DNA AcHobo 57 414 -647 3 1612 195 282 125 14 chr1 134737238 134737310 -62458122 - MIRc SINE MIR -127 141 62 3 1612 185 248 151 47 chr1 134737813 134737919 -62457513 - MIR3 SINE MIR -28 180 64 3 1612 459 262 106 12 chr1 134737943 134738113 -62457319 + MER21B LTR ERV1 1 186 -677 3 1612 1434 134 188 7 chr1 134738134 134738426 -62457006 + IAPLTR4 LTR ERVK 1 345 0 3 1612 1078 352 83 44 chr1 134738431 134739019 -62456413 + MER21B LTR ERV1 205 815 -48 3 1612 641 260 220 4 chr1 134739022 134739076 -62456356 - B4A SINE B4 -4 288 229 3 1612 198 0 0 0 chr1 134739076 134739098 -62456334 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1612 641 260 220 4 chr1 134739098 134739279 -62456153 - B4A SINE B4 -64 228 4 3 1612 279 0 0 0 chr1 134739294 134739325 -62456107 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1612 389 350 38 13 chr1 134739638 134739797 -62455635 + MIRb SINE MIR 10 172 -96 3 1612 318 312 68 41 chr1 134740135 134740282 -62455150 - MLT1A1 LTR MaLR -12 396 246 3 1612 341 301 8 58 chr1 134741392 134741512 -62453920 + MLT1A LTR MaLR 108 221 -153 3 1612 279 226 30 99 chr1 134741557 134741706 -62453726 - MLT1B LTR MaLR -29 438 259 3 1613 186 189 0 0 chr1 134742919 134742956 -62452476 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 3 1613 372 252 29 107 chr1 134742957 134743201 -62452231 + L1MD LINE L1 4958 5182 -964 3 1613 592 328 92 52 chr1 134743218 134743261 -62452171 + L1ME1 LINE L1 5254 5296 -883 3 1613 402 242 127 15 chr1 134743261 134743395 -62452037 + B1F SINE Alu 1 149 0 3 1613 592 328 92 52 chr1 134743395 134744217 -62451215 + L1ME1 LINE L1 5297 6153 -26 3 1613 915 295 45 62 chr1 134744493 134744847 -62450585 + MER82 DNA MER2_type 45 392 -261 3 1613 532 283 6 62 chr1 134746137 134746299 -62449133 - ID_B1 SINE B4 -5 219 67 4 1613 1822 239 53 135 chr1 134746348 134746956 -62448476 + RLTR1D LTR ERV1 48 605 0 4 1613 369 62 0 0 chr1 134748306 134748354 -62447078 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1613 448 246 182 18 chr1 134748902 134749072 -62446360 - B3A SINE B2 0 198 1 4 1613 622 252 15 8 chr1 134749089 134749221 -62446211 - B1F1 SINE Alu -4 145 13 4 1613 339 314 31 98 chr1 134749504 134749707 -62445725 - MIR SINE MIR -30 232 43 4 1613 201 260 40 0 chr1 134750667 134750717 -62444715 - L3 LINE CR1 -21 4468 4417 4 1613 214 315 74 32 chr1 134750972 134751067 -62444365 - MER5A DNA MER1_type 0 189 91 4 1613 257 266 71 71 chr1 134751249 134751403 -62444029 + MER74B LTR ERVL 338 491 -131 4 1613 183 243 40 54 chr1 134751518 134751592 -62443840 - MER5A DNA MER1_type -111 78 6 4 1613 342 0 0 0 chr1 134751929 134751967 -62443465 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1613 898 225 50 0 chr1 134752087 134752287 -62443145 + B3 SINE B2 7 216 0 4 1613 306 175 0 0 chr1 134752484 134752547 -62442885 + L1M1 LINE L1 5715 5777 -526 4 1613 221 256 0 0 chr1 134752549 134752592 -62442840 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1613 970 258 87 0 chr1 134753619 134753883 -62441549 + MER2 DNA MER2_type 59 345 0 4 1613 238 154 58 0 chr1 134754636 134754688 -62440744 + ORR1B2 LTR MaLR 313 367 0 4 1613 363 23 0 0 chr1 134755443 134755487 -62439945 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1613 698 239 6 42 chr1 134757105 134757271 -62438161 + B3 SINE B2 57 216 0 4 1613 861 257 57 28 chr1 134757297 134757545 -62437887 + MER2 DNA MER2_type 90 344 -1 4 1613 444 37 0 0 chr1 134757588 134757642 -62437790 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1613 239 301 158 22 chr1 134760601 134760740 -62434692 + MIRb SINE MIR 29 190 -78 4 1613 503 227 73 0 chr1 134761277 134761387 -62434045 + ID_B1 SINE B4 100 217 -7 4 1613 519 60 0 0 chr1 134761417 134761484 -62433948 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 4 1613 573 264 7 35 chr1 134761689 134761834 -62433598 - RSINE1 SINE B4 -22 143 3 4 1613 266 343 40 53 chr1 134761858 134762009 -62433423 - L2b LINE L2 -2 3373 3225 4 1613 319 269 37 0 chr1 134762045 134762153 -62433279 + MER2 DNA MER2_type 91 202 -143 4 1613 456 348 43 5 chr1 134762338 134762523 -62432909 - MIR SINE MIR -3 259 68 4 1613 1272 73 0 0 chr1 134762609 134762786 -62432646 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 4 1613 674 82 0 10 chr1 134762797 134762896 -62432536 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 4 1613 255 103 0 0 chr1 134762985 134763024 -62432408 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 4 1613 539 263 49 29 chr1 134764195 134764399 -62431033 - L1MD2 LINE L1 -17 6342 6135 4 1613 271 231 9 9 chr1 134764399 134764508 -62430924 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 1613 697 305 133 47 chr1 134764545 134764950 -62430482 - L1MD2 LINE L1 -1691 6094 5673 4 1613 582 254 101 6 chr1 134764983 134765161 -62430271 - MTEa LTR MaLR -1 378 184 4 1613 285 267 13 26 chr1 134765145 134765222 -62430210 - MTEa LTR MaLR -303 76 1 4 1613 324 0 0 0 chr1 134765980 134766016 -62429416 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1613 657 240 58 90 chr1 134766029 134766174 -62429258 - B3A SINE B2 -16 182 42 4 1613 291 85 0 0 chr1 134766174 134766221 -62429211 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 4 1613 1242 42 0 0 chr1 134766221 134766363 -62429069 - B1_Mus1 SINE Alu -5 143 2 4 1613 657 240 58 90 chr1 134766363 134766404 -62429028 - B3A SINE B2 -157 41 2 4 1613 27 0 0 0 chr1 134766667 134766694 -62428738 + AT_rich Low_complexity Low_complexity 1 27 0 4 1613 279 0 0 0 chr1 134766922 134766953 -62428479 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1613 188 277 125 57 chr1 134767207 134767295 -62428137 - L4 LINE RTE -210 1819 1726 4 1613 198 118 0 0 chr1 134767817 134767851 -62427581 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 4 1613 4949 86 76 6 chr1 134767885 134768573 -62426859 - RMER19A LTR ERVK 0 737 2 4 1613 1283 101 26 16 chr1 134769135 134769326 -62426106 + B2_Mm1t SINE B2 1 193 0 4 1613 180 0 0 0 chr1 134769758 134769778 -62425654 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1613 1943 110 195 32 chr1 134769880 134770219 -62425213 - ORR1B1 LTR MaLR 0 394 1 4 1613 617 157 9 0 chr1 134770963 134771078 -62424354 + CT-rich Low_complexity Low_complexity 1 116 0 4 1613 529 174 102 0 chr1 134771078 134771176 -62424256 - B1_Mur2 SINE Alu 0 149 42 4 1613 244 258 86 57 chr1 134771080 134771220 -62424212 - RLTR25B LTR ERVK -488 540 397 4 1613 204 0 0 156 chr1 134771221 134771317 -62424115 + (CTCTG)n Simple_repeat Simple_repeat 5 85 0 4 1613 338 315 32 2 chr1 134771792 134771899 -62423533 + ID_B1 SINE B4 1 117 -175 4 1613 1221 191 0 9 chr1 134771951 134772162 -62423270 - B3 SINE B2 -2 214 6 4 1613 745 246 5 62 chr1 134772188 134772396 -62423036 - Arthur1C DNA Tip100 -103 260 65 4 1613 2011 154 70 0 chr1 134772500 134772858 -62422574 + ORR1C2 LTR MaLR 2 384 0 4 1613 360 240 15 3 chr1 134773446 134773540 -62421892 + B1_Mur1 SINE Alu 14 111 -38 4 1613 207 0 0 0 chr1 134773702 134773725 -62421707 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1613 1030 208 38 24 chr1 134773734 134773946 -62421486 + B3 SINE B2 2 216 0 4 1613 221 281 98 164 chr1 134774109 134774218 -62421214 - ID_B1 SINE B4 -42 182 12 4 1613 279 306 0 27 chr1 134774218 134774292 -62421140 - ID4_ SINE ID 0 83 12 4 1613 236 275 242 7 chr1 134774302 134774404 -62421028 - PB1 SINE Alu -2 125 4 4 1613 488 204 102 0 chr1 134774747 134774845 -62420587 + PB1D10 SINE Alu 3 110 -7 4 1613 258 375 34 14 chr1 134775588 134775734 -62419698 + L2c LINE L2 3060 3208 -179 4 1613 31 0 0 0 chr1 134776968 134776999 -62418433 + GC_rich Low_complexity Low_complexity 1 31 0 4 1613 247 308 76 13 chr1 134779399 134779478 -62415954 - L2a LINE L2 0 3426 3343 4 1613 280 247 133 11 chr1 134780699 134780789 -62414643 - L2c LINE L2 -2 3385 3285 4 1613 587 281 93 21 chr1 134780783 134781019 -62414413 + MIR SINE MIR 10 262 0 4 1613 223 306 116 0 chr1 134781729 134781858 -62413574 - MIRb SINE MIR -1 261 117 4 1613 353 277 0 12 chr1 134782121 134782205 -62413227 - ID4_ SINE ID 0 83 1 4 1613 655 200 14 43 chr1 134782221 134782362 -62413070 + B1_Mur4 SINE Alu 4 140 -10 4 1613 378 0 0 0 chr1 134782362 134782404 -62413028 + (CACAA)n Simple_repeat Simple_repeat 4 45 0 4 1613 206 337 149 29 chr1 134783067 134783275 -62412157 - L2a LINE L2 -5 3421 3189 4 1613 398 250 62 28 chr1 134784676 134784820 -62410612 + MIRb SINE MIR 40 188 -80 4 1613 668 235 93 22 chr1 134784814 134785040 -62410392 - MIRb SINE MIR 0 268 27 4 1613 218 210 194 0 chr1 134785047 134785109 -62410323 + MIR SINE MIR 183 256 -6 4 1613 835 294 141 46 chr1 134785952 134786412 -62409020 + MLT1D LTR MaLR 1 504 -1 4 1613 224 314 38 38 chr1 134786523 134786629 -62408803 - MIR SINE MIR -58 150 45 4 1613 314 381 77 21 chr1 134787927 134788180 -62407252 + MIRb SINE MIR 3 265 -3 4 1613 215 302 0 31 chr1 134788287 134788352 -62407080 - MIRm SINE MIR 0 276 214 4 1613 321 352 62 19 chr1 134789049 134789211 -62406221 - MIR3 SINE MIR -24 184 16 4 1613 203 286 0 0 chr1 134789379 134789435 -62405997 + C-rich Low_complexity Low_complexity 5 60 0 4 1613 346 331 125 57 chr1 134789570 134790114 -62405318 + L2 LINE L2 960 1540 -1879 4 1613 983 245 59 48 chr1 134791422 134791692 -62403740 - B4 SINE B4 -18 274 2 4 1613 356 0 23 0 chr1 134791898 134791942 -62403490 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 1613 514 226 19 0 chr1 134791942 134792048 -62403384 - PB1D9 SINE Alu -11 109 2 4 1613 821 226 42 5 chr1 134792073 134792264 -62403168 - B3A SINE B2 0 198 1 4 1613 297 303 20 20 chr1 134792311 134792412 -62403020 + L2c LINE L2 3262 3362 -25 4 1613 299 296 82 0 chr1 134792425 134792523 -62402909 + PB1D10 SINE Alu 4 109 -8 4 1613 380 316 9 17 chr1 134792536 134792652 -62402780 + PB1D10 SINE Alu 3 117 0 4 1613 1124 208 14 0 chr1 134792752 134792964 -62402468 + B3 SINE B2 2 216 0 4 1613 22 0 0 0 chr1 134792966 134792988 -62402444 + AT_rich Low_complexity Low_complexity 1 22 0 4 1613 414 278 7 29 chr1 134793241 134793378 -62402054 - L1MD2 LINE L1 -469 5890 5757 4 1613 199 328 0 17 chr1 134793510 134793569 -62401863 + L2c LINE L2 3355 3412 -14 4 1613 241 286 0 25 chr1 134795036 134795115 -62400317 + MLT1A1 LTR MaLR 320 396 -12 4 1613 182 298 33 127 chr1 134796773 134796923 -62398509 + MIRm SINE MIR 4 139 -137 4 1613 956 64 35 7 chr1 134798087 134798228 -62397204 - MT2C_Mm LTR ERVL 0 475 331 4 1613 180 357 43 0 chr1 134799250 134799320 -62396112 - L2b LINE L2 -12 3363 3291 4 1613 389 173 27 0 chr1 134799763 134799838 -62395594 - MIR SINE MIR 0 262 186 4 1613 207 0 0 0 chr1 134799954 134799977 -62395455 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1613 351 263 97 0 chr1 134800283 134800397 -62395035 - Tigger12 DNA MER2_type 0 1959 1835 4 1613 257 241 24 48 chr1 134800580 134800663 -62394769 + HAL1 LINE L1 4 84 -2423 4 1613 2104 116 76 35 chr1 134800953 134801321 -62394111 + ORR1B1 LTR MaLR 1 383 -11 4 1613 890 318 57 20 chr1 134801797 134802195 -62393237 - L1MB7 LINE L1 -40 6144 5740 4 1613 390 237 43 0 chr1 134802247 134802340 -62393092 + PB1D10 SINE Alu 3 99 -18 4 1613 429 208 0 14 chr1 134802356 134802429 -62393003 + ID4 SINE ID 2 73 -10 4 1613 393 268 10 30 chr1 134802573 134802673 -62392759 + PB1 SINE Alu 22 119 -8 5 1613 255 341 142 13 chr1 134802674 134802906 -62392526 + HAL1 LINE L1 1410 1671 -836 4 1613 301 170 0 0 chr1 134802947 134802994 -62392438 + B3A SINE B2 2 48 -150 5 1613 728 239 18 6 chr1 134803500 134803668 -62391764 + B3 SINE B2 47 216 0 5 1613 264 358 25 0 chr1 134804216 134804297 -62391135 + MIR SINE MIR 4 86 -176 5 1613 192 286 0 0 chr1 134804338 134804387 -62391045 + MIR SINE MIR 180 228 -34 5 1613 1560 58 16 0 chr1 134804644 134804835 -62390597 + B2_Mm2 SINE B2 1 194 -1 5 1613 512 288 34 0 chr1 134805164 134805310 -62390122 - ID_B1 SINE B4 0 224 74 5 1613 270 322 90 42 chr1 134805999 134806118 -62389314 - MLT1E2 LTR MaLR -118 562 375 5 1613 2231 95 6 112 chr1 134806118 134806484 -62388948 + ORR1A2 LTR MaLR 1 327 0 5 1613 270 300 89 32 chr1 134806484 134806577 -62388855 - MLT1E2 LTR MaLR -253 374 284 5 1613 422 151 21 59 chr1 134806663 134806792 -62388640 + ORR1A1 LTR MaLR 19 165 -202 5 1613 211 182 91 0 chr1 134808645 134808700 -62386732 + MIRc SINE MIR 92 151 -117 5 1613 198 333 0 0 chr1 134808868 134808928 -62386504 + MIR3 SINE MIR 142 201 -7 5 1613 198 293 52 0 chr1 134809084 134809142 -62386290 - MIRb SINE MIR -183 85 25 5 1613 21 36 0 0 chr1 134809246 134809274 -62386158 + AT_rich Low_complexity Low_complexity 1 28 0 5 1613 348 24 0 0 chr1 134809274 134809315 -62386117 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1613 250 320 40 0 chr1 134809326 134809401 -62386031 + B3A SINE B2 38 115 -83 5 1613 222 37 0 0 chr1 134810187 134810214 -62385218 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1613 230 228 17 17 chr1 134810714 134810772 -62384660 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 5 1613 294 206 0 0 chr1 134810772 134810845 -62384587 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 5 1613 3100 124 7 0 chr1 134810877 134811295 -62384137 - MTC LTR MaLR 0 421 1 5 1613 187 125 62 0 chr1 134811295 134811343 -62384089 + (CATA)n Simple_repeat Simple_repeat 1 51 0 5 1613 284 217 11 0 chr1 134811380 134811472 -62383960 + (TCCA)n Simple_repeat Simple_repeat 1 93 0 5 1613 1738 236 16 3 chr1 134811479 134811852 -62383580 - MTE2b LTR MaLR -1 378 1 5 1613 186 279 0 0 chr1 134811853 134811939 -62383493 + (CCCA)n Simple_repeat Simple_repeat 3 88 0 5 1613 281 163 43 0 chr1 134812269 134812361 -62383071 + CT-rich Low_complexity Low_complexity 1 96 0 5 1613 1152 208 85 85 chr1 134813141 134813381 -62382051 - RMER10A LTR ERVL -6 436 206 5 1613 1142 25 37 12 chr1 134813381 134813545 -62381887 + (CATA)n Simple_repeat Simple_repeat 2 169 0 5 1613 1152 208 85 85 chr1 134813545 134813740 -62381692 - RMER10A LTR ERVL -237 205 2 5 1613 430 316 69 17 chr1 134813829 134814003 -62381429 - MIRb SINE MIR -62 206 24 5 1613 431 221 94 20 chr1 134816206 134816367 -62379065 + MLT1A0 LTR MaLR 245 408 0 5 1613 1106 101 0 0 chr1 134816647 134816795 -62378637 + B1_Mus1 SINE Alu 1 148 0 5 1613 201 147 0 0 chr1 134816795 134816829 -62378603 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1613 350 233 18 84 chr1 134817228 134817395 -62378037 + MIR SINE MIR 29 170 -92 5 1613 204 40 0 0 chr1 134818924 134818949 -62376483 + (CAAG)n Simple_repeat Simple_repeat 1 25 0 5 1613 258 32 0 0 chr1 134818962 134818993 -62376439 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1613 570 258 23 0 chr1 134819420 134819552 -62375880 - ID_B1 SINE B4 0 224 90 5 1613 409 264 0 76 chr1 134819569 134819688 -62375744 - PB1D7 SINE Alu -1 119 10 5 1613 324 221 0 0 chr1 134819688 134819765 -62375667 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1613 187 337 109 0 chr1 134820092 134820184 -62375248 - MIR SINE MIR -113 149 48 5 1613 708 333 41 56 chr1 134820190 134820333 -62375099 - MLT1C LTR MaLR 0 467 323 5 1613 1099 95 8 195 chr1 134820333 134820484 -62374948 + B2_Mm1t SINE B2 2 116 -77 5 1613 1404 95 5 0 chr1 134820484 134820673 -62374759 - B2_Mm1a SINE B2 -3 190 1 5 1613 1099 95 8 195 chr1 134820673 134820757 -62374675 + B2_Mm1t SINE B2 117 193 0 5 1613 708 333 41 56 chr1 134820757 134821004 -62374428 - MLT1C LTR MaLR -145 322 83 5 1613 225 363 26 0 chr1 134821015 134821035 -62374397 - MLT1C LTR MaLR -274 116 97 5 1613 1153 75 7 0 chr1 134821035 134821181 -62374251 - B1_Mm SINE Alu 0 147 1 5 1613 268 309 34 0 chr1 134821181 134821273 -62374159 - MLT1C LTR MaLR -294 96 1 5 1613 216 260 39 52 chr1 134822095 134822172 -62373260 + MIRm SINE MIR 40 115 -161 5 1613 186 171 0 28 chr1 134822143 134822179 -62373253 + MIRc SINE MIR 84 118 -150 5 1613 577 268 219 36 chr1 134822247 134822526 -62372906 - MLT1A1 LTR MaLR -34 374 45 5 1613 772 217 0 0 chr1 134822536 134822679 -62372753 - B1_Mus2 SINE Alu 0 147 5 5 1613 1283 97 43 5 chr1 134822695 134822882 -62372550 - B2_Mm2 SINE B2 0 195 2 5 1613 1563 216 83 19 chr1 134823341 134823671 -62371761 - MTD LTR MaLR -22 397 39 5 1613 2341 101 28 0 chr1 134823671 134823989 -62371443 - ORR1A2 LTR MaLR 0 327 1 5 1613 1563 216 83 19 chr1 134823989 134824031 -62371401 - MTD LTR MaLR -381 38 1 5 1613 225 301 59 50 chr1 134824480 134824599 -62370833 - MER5A DNA MER1_type -47 142 23 5 1613 630 0 0 0 chr1 134824877 134824947 -62370485 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 1613 1534 64 16 0 chr1 134826230 134826417 -62369015 + B2_Mm2 SINE B2 1 190 -5 5 1613 189 0 0 0 chr1 134826616 134826637 -62368795 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1613 957 18 0 0 chr1 134826637 134826747 -62368685 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 1613 181 303 27 116 chr1 134827358 134827470 -62367962 + MIRb SINE MIR 47 148 -120 5 1613 233 310 126 7 chr1 134828531 134828674 -62366758 - MIRc SINE MIR -107 161 2 5 1613 252 229 140 44 chr1 134829622 134829736 -62365696 + MIRc SINE MIR 85 209 -59 5 1613 381 277 11 0 chr1 134830850 134830944 -62364488 + PB1D10 SINE Alu 2 96 -21 5 1613 186 291 177 0 chr1 134831123 134831202 -62364230 - MIR SINE MIR -131 131 39 5 1613 510 114 0 0 chr1 134831374 134831453 -62363979 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1613 226 228 83 73 chr1 134831804 134831913 -62363519 + MTD LTR MaLR 199 308 -111 5 1613 1191 61 0 0 chr1 134832189 134832336 -62363096 - B1_Mus2 SINE Alu 0 147 1 5 1613 23 0 0 0 chr1 134836531 134836554 -62358878 + AT_rich Low_complexity Low_complexity 1 23 0 5 1613 222 245 94 0 chr1 134837749 134837802 -62357630 - PB1D10 SINE Alu -6 111 54 5 1613 355 298 244 11 chr1 134838845 134839109 -62356323 - L2a LINE L2 -290 3136 2811 5 1613 453 339 25 57 chr1 134839723 134839956 -62355476 - MIRb SINE MIR -18 250 26 5 1613 486 237 0 56 chr1 134839956 134840081 -62355351 + PB1D9 SINE Alu 2 119 -1 5 1613 688 219 58 0 chr1 134840101 134840238 -62355194 - ID_B1 SINE B4 -1 223 79 5 1613 219 114 0 0 chr1 134840582 134840617 -62354815 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1613 405 0 0 0 chr1 134841046 134841091 -62354341 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1613 533 255 36 42 chr1 134841374 134841542 -62353890 - MIRc SINE MIR -91 177 11 5 1613 185 281 20 101 chr1 134841805 134841904 -62353528 - L2a LINE L2 -605 2814 2724 5 1613 215 347 93 21 chr1 134843024 134843121 -62352311 - MER5A DNA MER1_type -75 114 11 5 1613 255 198 69 99 chr1 134843164 134843265 -62352167 + MER5B DNA MER1_type 12 109 -69 5 1613 260 329 0 47 chr1 134843335 134843421 -62352011 - B4A SINE B4 -210 82 1 5 1613 342 215 115 53 chr1 134843495 134843608 -62351824 - PB1D7 SINE Alu 0 120 1 5 1613 407 202 79 0 chr1 134843846 134843935 -62351497 + B1F SINE Alu 11 106 -43 5 1613 333 100 0 0 chr1 134843950 134844000 -62351432 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1613 203 372 21 21 chr1 134844172 134844268 -62351164 - L3 LINE CR1 -103 4386 4291 5 1613 755 207 39 39 chr1 134844914 134845095 -62350337 + B3A SINE B2 1 181 -17 5 1613 646 223 42 28 chr1 134846184 134846327 -62349105 - B1_Mus2 SINE Alu -1 146 2 5 1613 225 0 0 0 chr1 134846327 134846352 -62349080 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 5 1613 225 0 0 0 chr1 134846371 134846396 -62349036 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1613 315 0 0 0 chr1 134846396 134846430 -62349002 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1613 519 17 0 0 chr1 134846511 134846571 -62348861 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1613 594 337 144 2 chr1 134846790 134847201 -62348231 - L1MB3 LINE L1 -204 5979 5511 5 1613 222 98 48 24 chr1 134847319 134847361 -62348071 + (CCCA)n Simple_repeat Simple_repeat 1 43 0 5 1613 788 250 7 0 chr1 134847636 134847788 -62347644 + RSINE1 SINE B4 2 154 -11 5 1613 312 102 0 0 chr1 134847789 134847838 -62347594 + (CATA)n Simple_repeat Simple_repeat 1 49 0 5 1613 775 238 82 16 chr1 134847948 134848132 -62347300 - B3 SINE B2 0 216 21 5 1613 301 336 112 0 chr1 134848148 134848291 -62347141 - HAL1-3A_ME LINE L1 -414 2444 2286 5 1613 186 43 0 0 chr1 134848291 134848314 -62347118 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1613 434 308 113 28 chr1 134848316 134848600 -62346832 - L1MC1 LINE L1 -12 6321 6014 5 1613 261 180 31 82 chr1 134849472 134849550 -62345882 - MIRc SINE MIR -133 143 66 5 1613 330 26 0 0 chr1 134850207 134850246 -62345186 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 1613 1039 72 0 21 chr1 134850246 134850383 -62345049 - B1_Mus2 SINE Alu -8 139 5 5 1613 237 98 0 0 chr1 134850735 134850776 -62344656 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1613 479 272 17 9 chr1 134851077 134851192 -62344240 - RSINE1 SINE B4 -2 163 48 5 1613 223 276 31 28 chr1 134851335 134851425 -62344007 + MIRc SINE MIR 48 138 -124 5 1613 1080 204 0 43 chr1 134851855 134852065 -62343367 - B3 SINE B2 -14 202 2 5 1613 521 318 25 5 chr1 134852572 134852768 -62342664 - ERVL-E-int LTR ERVL -1750 3917 3718 5 1613 764 175 14 34 chr1 134853830 134853978 -62341454 - B1_Mur1 SINE Alu 0 149 5 5 1613 273 89 0 0 chr1 134854099 134854144 -62341288 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1613 317 169 35 94 chr1 134854234 134854319 -62341113 + ID2 SINE ID 2 81 -2 6 1613 792 184 27 34 chr1 134854405 134854551 -62340881 + B1_Mus1 SINE Alu 3 147 -1 6 1613 182 333 15 0 chr1 134854573 134854639 -62340793 + L2a LINE L2 3280 3346 -80 6 1613 262 200 0 18 chr1 134855243 134855299 -62340133 + GA-rich Low_complexity Low_complexity 2 56 0 6 1613 783 189 42 0 chr1 134855602 134855745 -62339687 + B1_Mur4 SINE Alu 1 149 -1 6 1613 539 189 11 8 chr1 134855883 134856000 -62339432 + B1_Mus1 SINE Alu 2 120 0 6 1613 274 281 197 49 chr1 134855887 134856029 -62339403 + B4A SINE B4 91 253 -39 6 1613 2021 237 56 18 chr1 134856078 134856521 -62338911 - MT2A LTR ERVL -73 460 1 6 1613 233 404 50 22 chr1 134856545 134856684 -62338748 + Tigger12c DNA MER2_type 1 143 -591 6 1613 1177 82 0 0 chr1 134857236 134857382 -62338050 - B1_Mus2 SINE Alu 0 147 2 6 1613 3335 129 16 2 chr1 134857983 134858473 -62336959 - RLTR19 LTR ERVK 0 499 3 6 1613 228 200 0 0 chr1 134859164 134859214 -62336218 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 6 1613 246 62 0 0 chr1 134859212 134859244 -62336188 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1613 471 213 14 7 chr1 134859245 134859387 -62336045 + (TGGA)n Simple_repeat Simple_repeat 3 145 0 6 1613 210 258 145 0 chr1 134859506 134859568 -62335864 + MIR SINE MIR 31 101 -161 6 1613 796 172 0 23 chr1 134859772 134859903 -62335529 - B1_Mur1 SINE Alu 0 149 22 6 1613 333 275 43 21 chr1 134859900 134859993 -62335439 + B1F1 SINE Alu 53 147 -2 6 1613 394 226 165 10 chr1 134860051 134860154 -62335278 + PB1D7 SINE Alu 1 119 -1 6 1613 235 248 219 0 chr1 134860334 134860436 -62334996 + MIR SINE MIR 43 160 -102 6 1613 977 171 103 10 chr1 134860512 134860707 -62334725 + B3 SINE B2 1 213 -3 6 1613 414 276 75 91 chr1 134861616 134861669 -62333763 + B4 SINE B4 41 223 -68 6 1613 880 120 23 0 chr1 134861669 134861802 -62333630 + B1_Mus2 SINE Alu 12 147 0 6 1613 599 159 9 0 chr1 134861804 134861917 -62333515 + GA-rich Low_complexity Low_complexity 3 116 0 6 1613 1157 106 0 11 chr1 134861917 134862098 -62333334 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 6 1613 552 267 114 50 chr1 134862171 134862372 -62333060 + MER20 DNA MER1_type 6 219 0 6 1613 1709 21 0 0 chr1 134862649 134862841 -62332591 + B2_Mm1a SINE B2 2 193 0 6 1613 838 244 34 14 chr1 134862950 134863158 -62332274 + B3 SINE B2 5 216 0 6 1613 1282 178 0 9 chr1 134863400 134863615 -62331817 - B3 SINE B2 -3 213 1 6 1613 1278 91 0 22 chr1 134864859 134865019 -62330413 + B2_Mm2 SINE B2 2 161 -34 6 1613 333 0 0 0 chr1 134865019 134865056 -62330376 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 6 1613 1278 91 0 22 chr1 134865056 134865074 -62330358 + B2_Mm2 SINE B2 162 176 -19 6 1613 257 167 0 18 chr1 134865075 134865130 -62330302 + GA-rich Low_complexity Low_complexity 3 56 0 6 1613 379 259 164 20 chr1 134865352 134865498 -62329934 + B3 SINE B2 2 168 -48 6 1613 216 0 0 0 chr1 134865518 134865542 -62329890 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1613 242 217 29 14 chr1 134865893 134865963 -62329469 - ID4_ SINE ID -10 73 3 6 1613 2620 74 3 0 chr1 134866435 134866761 -62328671 + ORR1A2 LTR MaLR 1 327 0 6 1613 316 317 74 40 chr1 134866798 134866946 -62328486 + MIRb SINE MIR 6 158 -110 6 1613 904 197 62 33 chr1 134866997 134867207 -62328225 + B3 SINE B2 1 216 0 6 1613 467 255 200 7 chr1 134867281 134867431 -62328001 + B3 SINE B2 1 179 -37 6 1613 242 328 53 38 chr1 134867694 134867827 -62327605 - MIRm SINE MIR -135 141 7 6 1613 584 344 61 25 chr1 134867920 134868200 -62327232 + B4A SINE B4 2 291 -1 6 1613 195 69 0 0 chr1 134868206 134868235 -62327197 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 6 1613 354 264 21 21 chr1 134868250 134868393 -62327039 + (CAGAGA)n Simple_repeat Simple_repeat 6 148 0 6 1613 216 139 69 0 chr1 134868412 134868484 -62326948 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 6 1613 212 122 24 0 chr1 134868516 134868557 -62326875 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 6 1613 279 236 71 61 chr1 134868559 134868658 -62326774 - MTEa LTR MaLR -279 100 1 6 1613 1000 112 0 15 chr1 134869738 134869874 -62325558 + B1_Mur4 SINE Alu 1 134 -16 6 1613 214 178 0 0 chr1 134869874 134869919 -62325513 + GA-rich Low_complexity Low_complexity 2 46 0 6 1613 214 276 54 65 chr1 134869964 134870057 -62325375 + MIRc SINE MIR 26 117 -151 6 1613 2803 140 51 33 chr1 134870145 134870541 -62324891 + MYSERV16_I-int LTR ERVK 1747 2149 -177 6 1613 1307 94 39 0 chr1 134870541 134870721 -62324711 + B2_Mm2 SINE B2 2 188 -7 6 1613 2803 140 51 33 chr1 134870721 134870894 -62324538 + MYSERV16_I-int LTR ERVK 2150 2326 0 6 1613 3470 117 16 53 chr1 134870894 134871456 -62323976 + RLTR20A LTR ERVK 1 541 0 6 1613 1012 211 28 33 chr1 134871922 134872133 -62323299 + B3 SINE B2 1 210 -6 6 1613 657 0 0 0 chr1 134872180 134872253 -62323179 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 6 1613 1165 207 85 38 chr1 134872298 134872609 -62322823 - ORR1C2 LTR MaLR 0 384 80 6 201 223 266 14 96 chr1 134873058 134873094 -62322338 + B4 SINE B4 48 144 -148 6 1614 259 190 0 94 chr1 134873094 134873158 -62322274 + B1_Mus2 SINE Alu 2 59 -88 6 1614 395 162 0 0 chr1 134873159 134873328 -62322104 + GA-rich Low_complexity Low_complexity 1 169 0 6 1614 418 165 18 33 chr1 134873330 134873422 -62322010 + PB1D9 SINE Alu 41 144 -5 6 1614 473 179 0 31 chr1 134873446 134873573 -62321859 + G-rich Low_complexity Low_complexity 4 126 0 6 1614 803 196 7 7 chr1 134874654 134874803 -62320629 + B1_Mur1 SINE Alu 1 149 0 6 1614 723 248 6 24 chr1 134875058 134875223 -62320209 - RSINE1 SINE B4 -1 164 3 6 1614 386 235 10 38 chr1 134875228 134875332 -62320100 - PB1D10 SINE Alu -2 115 19 6 1614 437 255 92 0 chr1 134875789 134875887 -62319545 + PB1D9 SINE Alu 4 110 -10 6 1614 325 299 186 13 chr1 134876023 134876260 -62319172 - LTR37A LTR ERV1 -1 425 148 6 1614 1821 169 56 80 chr1 134876325 134876738 -62318694 - RMER2 LTR ERV1 0 567 165 6 1614 180 0 0 0 chr1 134876747 134876767 -62318665 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1614 1072 31 0 0 chr1 134876768 134876895 -62318537 - B1_Mm SINE Alu -12 135 9 6 1614 940 120 7 0 chr1 134876959 134877101 -62318331 + URR1A DNA MER1_type 83 225 -1 6 1614 206 211 0 0 chr1 134877398 134877436 -62317996 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1614 279 343 56 69 chr1 134877436 134877668 -62317764 + MER102b DNA MER1_type 98 326 -15 6 1614 273 75 0 0 chr1 134877733 134877773 -62317659 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1614 377 281 102 43 chr1 134877774 134877960 -62317472 - ID_B1 SINE B4 -21 203 7 6 1614 384 250 0 13 chr1 134878062 134878139 -62317293 - ID4 SINE ID -2 81 6 6 1614 457 234 157 98 chr1 134878261 134878465 -62316967 + B3 SINE B2 1 216 0 6 1614 817 149 57 40 chr1 134878711 134878886 -62316546 - B3 SINE B2 -38 178 1 6 1614 362 330 19 0 chr1 134879535 134879652 -62315780 - MIRb SINE MIR -46 162 49 6 1614 436 323 0 0 chr1 134879766 134879865 -62315567 + B1_Mus2 SINE Alu 4 102 -45 6 1614 397 54 54 0 chr1 134879859 134879915 -62315517 + B2_Mm1t SINE B2 121 179 -14 6 1614 513 307 40 45 chr1 134879914 134880112 -62315320 - B3A SINE B2 0 198 2 6 1614 768 193 21 0 chr1 134880566 134880711 -62314721 - B1_Mur4 SINE Alu 0 150 3 6 1614 535 223 69 0 chr1 134880748 134880878 -62314554 - B3A SINE B2 -59 139 1 6 1614 344 302 0 0 chr1 134880931 134881017 -62314415 - PB1D10 SINE Alu -19 98 13 6 1614 517 241 46 0 chr1 134881058 134881166 -62314266 - PB1D9 SINE Alu -7 113 1 6 1614 286 195 49 204 chr1 134881784 134881926 -62313506 + PB1D7 SINE Alu 1 120 0 6 1614 617 214 41 48 chr1 134882285 134882432 -62313000 + B1_Mur1 SINE Alu 3 148 -1 6 1614 362 230 87 39 chr1 134884189 134884293 -62311139 + B1_Mur1 SINE Alu 41 149 0 6 1614 520 307 0 0 chr1 134885502 134885629 -62309803 + B1F1 SINE Alu 17 143 -6 6 1614 301 313 30 85 chr1 134885503 134885667 -62309765 + B4A SINE B4 103 257 -35 6 1614 1366 195 189 0 chr1 134886048 134886361 -62309071 + ORR1D1 LTR MaLR 3 374 0 6 1614 1679 197 97 28 chr1 134886363 134886755 -62308677 + ORR1D1-int LTR MaLR 1 419 -951 6 1614 574 205 315 10 chr1 134886823 134887020 -62308412 + ORR1D1 LTR MaLR 118 374 0 6 1614 342 360 110 33 chr1 134887278 134887551 -62307881 + Charlie2b DNA MER1_type 4 297 -2485 6 1614 311 264 44 33 chr1 134887689 134887779 -62307653 + ID_B1 SINE B4 86 176 -48 6 1614 283 269 38 25 chr1 134888099 134888179 -62307253 - PB1D9 SINE Alu -8 112 32 6 1614 854 135 12 31 chr1 134889025 134889185 -62306247 + B2_Mm2 SINE B2 20 176 -19 6 1614 273 226 48 16 chr1 134889298 134889361 -62306071 + ORR1D2 LTR MaLR 1 65 -305 6 1614 2017 157 25 6 chr1 134889370 134889736 -62305696 + ORR1C1 LTR MaLR 6 378 0 6 1614 422 196 43 0 chr1 134889998 134890090 -62305342 - B1_Mur3 SINE Alu 0 149 54 6 1614 288 206 47 16 chr1 134890302 134890366 -62305066 - RSINE1 SINE B4 -85 80 15 6 1614 510 295 78 43 chr1 134890366 134890648 -62304784 - B4 SINE B4 -18 274 2 6 1614 1169 28 13 40 chr1 134890786 134890937 -62304495 + B1_Mus2 SINE Alu 1 147 0 6 1614 456 227 18 26 chr1 134891469 134891582 -62303850 + PB1D9 SINE Alu 1 112 -8 6 1614 248 161 0 35 chr1 134891599 134891657 -62303775 + G-rich Low_complexity Low_complexity 1 56 0 6 1614 229 394 19 0 chr1 134891683 134891787 -62303645 + B1F2 SINE Alu 15 120 -29 6 1614 396 252 20 0 chr1 134891815 134891914 -62303518 + B1F2 SINE Alu 1 101 -48 7 1614 552 244 67 0 chr1 134892144 134892263 -62303169 - B3 SINE B2 -89 127 1 7 1614 730 191 7 28 chr1 134892458 134892603 -62302829 - B1_Mus2 SINE Alu -5 142 1 7 1614 383 243 44 18 chr1 134893632 134893745 -62301687 - B1F1 SINE Alu 0 149 34 7 1614 641 241 171 8 chr1 134893797 134893993 -62301439 - B3 SINE B2 0 216 3 7 1614 1036 124 49 33 chr1 134894023 134894206 -62301226 - B2_Mm2 SINE B2 -7 188 3 7 1614 705 224 178 56 chr1 134894320 134894769 -62300663 + L1MA5 LINE L1 5417 5909 -382 7 1614 967 269 33 29 chr1 134894936 134895181 -62300251 + Lx6 LINE L1 7026 7271 -189 7 1614 582 202 138 8 chr1 134895196 134895326 -62300106 + B1_Mur4 SINE Alu 1 147 0 7 1614 22 0 0 0 chr1 134895416 134895438 -62299994 + AT_rich Low_complexity Low_complexity 1 22 0 7 1614 727 197 132 102 chr1 134895590 134895856 -62299576 - Lx5 LINE L1 -2 7048 6775 7 1614 894 180 23 0 chr1 134895856 134896028 -62299404 - B2_Mm2 SINE B2 -17 178 3 7 1614 839 171 233 6 chr1 134896050 134896226 -62299206 - B3 SINE B2 0 216 1 7 1614 844 133 66 12 chr1 134896702 134896869 -62298563 + B2_Mm2 SINE B2 1 176 -19 7 1614 347 223 0 87 chr1 134896878 134896981 -62298451 + B1_Mm SINE Alu 31 124 -23 7 1614 708 222 75 12 chr1 134897013 134897186 -62298246 + Lx8 LINE L1 6515 6698 -775 7 1614 429 213 202 52 chr1 134897189 134897362 -62298070 + B3 SINE B2 3 201 -15 7 1614 404 194 67 67 chr1 134897444 134897463 -62297969 + B4 SINE B4 73 177 -115 7 1614 506 174 0 0 chr1 134897463 134897549 -62297883 + B1_Mus1 SINE Alu 2 87 -61 7 1614 1041 66 66 0 chr1 134898230 134898367 -62297065 + B1_Mus2 SINE Alu 2 147 0 7 1614 242 115 151 19 chr1 134898559 134898612 -62296820 + B1_Mur1 SINE Alu 89 148 -1 7 1614 1225 28 0 7 chr1 134899514 134899660 -62295772 + B1_Mm SINE Alu 3 147 0 7 1614 206 211 0 0 chr1 134900308 134900346 -62295086 + GA-rich Low_complexity Low_complexity 4 41 0 7 1614 223 255 0 0 chr1 134900922 134900969 -62294463 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1614 323 268 20 45 chr1 134901924 134902072 -62293360 - RSINE1 SINE B4 -154 138 3 7 1614 294 295 47 9 chr1 134903076 134903182 -62292250 - PB1D10 SINE Alu -5 112 3 7 1614 457 227 89 18 chr1 134904046 134904158 -62291274 + B1F SINE Alu 1 120 -29 7 1614 1086 125 51 11 chr1 134904430 134904608 -62290824 + B2_Mm2 SINE B2 1 185 -10 7 1614 543 242 84 6 chr1 134904760 134904926 -62290506 + L1MA5 LINE L1 6069 6247 -53 7 1614 315 0 0 0 chr1 134904926 134904961 -62290471 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1614 492 81 0 0 chr1 134904961 134905035 -62290397 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1614 235 303 0 13 chr1 134905303 134905380 -62290052 + ID_B1 SINE B4 128 203 -21 7 1614 285 302 0 0 chr1 134905317 134905403 -62290029 + B1F SINE Alu 63 148 -1 7 1614 247 297 95 0 chr1 134905408 134905482 -62289950 + ID4_ SINE ID 3 83 0 7 1614 324 345 21 7 chr1 134905910 134906050 -62289382 + ID_B1 SINE B4 82 223 -1 7 1614 597 164 17 175 chr1 134906053 134906230 -62289202 + B1_Mur3 SINE Alu 1 149 0 7 1614 1293 97 11 0 chr1 134906403 134906578 -62288854 + B2_Mm1a SINE B2 3 179 -14 7 1614 252 49 73 0 chr1 134906686 134906727 -62288705 + B2_Mm2 SINE B2 137 180 -15 7 1614 28 0 0 0 chr1 134906727 134906755 -62288677 + AT_rich Low_complexity Low_complexity 1 28 0 7 1614 219 139 0 0 chr1 134906757 134906793 -62288639 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 7 1614 1153 23 17 28 chr1 134906794 134906972 -62288460 + (GGAAA)n Simple_repeat Simple_repeat 4 179 0 7 1614 903 214 71 0 chr1 134907035 134907231 -62288201 + B3 SINE B2 2 211 -5 7 1614 216 0 0 0 chr1 134908448 134908472 -62286960 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1614 1290 27 0 0 chr1 134908816 134908963 -62286469 - B1_Mm SINE Alu 0 147 1 7 1614 260 267 40 13 chr1 134909307 134909383 -62286049 - ID_B1 SINE B4 -10 214 137 7 1614 289 32 62 31 chr1 134909472 134909536 -62285896 + (CAAAAA)n Simple_repeat Simple_repeat 2 67 0 7 1614 865 219 57 0 chr1 134909764 134909956 -62285476 + B3 SINE B2 6 208 -8 7 1614 924 144 71 6 chr1 134909997 134910179 -62285253 + B2_Mm2 SINE B2 1 194 -1 7 1614 397 270 72 99 chr1 134910205 134910357 -62285075 + B1_Mur2 SINE Alu 2 149 0 7 1614 22 0 0 0 chr1 134910541 134910563 -62284869 + AT_rich Low_complexity Low_complexity 1 22 0 7 1614 345 289 0 0 chr1 134910785 134910868 -62284564 - ID4_ SINE ID 0 83 1 7 1614 305 270 79 10 chr1 134911127 134911228 -62284204 + MER58B DNA MER1_type 233 340 -1 7 1614 215 167 48 0 chr1 134911279 134911321 -62284111 + PB1D7 SINE Alu 1 44 -76 7 1614 670 272 26 32 chr1 134911459 134911649 -62283783 + B4A SINE B4 1 189 -103 7 1614 254 222 20 29 chr1 134911652 134911754 -62283678 + (TATAA)n Simple_repeat Simple_repeat 4 104 0 7 1614 340 298 11 0 chr1 134911755 134911849 -62283583 + B4A SINE B4 192 286 -6 7 1614 429 70 0 0 chr1 134911923 134911980 -62283452 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1614 289 302 33 11 chr1 134911983 134912089 -62283343 - B1F SINE Alu -37 112 5 7 1614 369 0 0 0 chr1 134912320 134912361 -62283071 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1614 1063 50 28 0 chr1 134912503 134912644 -62282788 + B1_Mm SINE Alu 3 147 0 7 1614 192 174 0 0 chr1 134912655 134912682 -62282750 + A-rich Low_complexity Low_complexity 1 27 0 7 1614 1248 47 141 0 chr1 134912682 134912852 -62282580 + B2_Mm2 SINE B2 2 195 0 7 1614 192 174 0 0 chr1 134912852 134912870 -62282562 + A-rich Low_complexity Low_complexity 28 45 0 7 1614 243 0 0 0 chr1 134913052 134913079 -62282353 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 7 1614 332 250 22 0 chr1 134913085 134913184 -62282248 + ID4_ SINE ID 3 105 -47 7 1614 941 79 140 0 chr1 134913428 134913592 -62281840 - B2_Mm1a SINE B2 0 193 7 7 1614 988 37 15 0 chr1 134913614 134913749 -62281683 + B1_Mus1 SINE Alu 12 148 0 7 1614 183 42 0 0 chr1 134913749 134913773 -62281659 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1614 550 172 0 65 chr1 134914035 134914159 -62281273 - PB1D9 SINE Alu 0 120 5 7 1614 25 31 0 0 chr1 134914463 134914495 -62280937 + AT_rich Low_complexity Low_complexity 1 32 0 7 1614 936 235 14 18 chr1 134914506 134914723 -62280709 + B3 SINE B2 1 216 0 7 1614 533 175 79 8 chr1 134914888 134915015 -62280417 + B1F2 SINE Alu 1 136 -13 7 1614 617 181 117 49 chr1 134915527 134915709 -62279723 + B3 SINE B2 1 195 0 7 1614 669 211 15 8 chr1 134915712 134915846 -62279586 + B1_Mm SINE Alu 1 135 -12 7 1614 885 69 136 15 chr1 134916360 134916492 -62278940 + B1_Mus1 SINE Alu 1 148 0 7 1614 1190 170 94 118 chr1 134916802 134917183 -62278249 + RLTR23 LTR ERV1 11 382 -48 7 1614 934 178 86 9 chr1 134917203 134917424 -62278008 + ORR1C2 LTR MaLR 139 376 -8 7 1614 338 250 94 57 chr1 134917436 134917542 -62277890 - B3A SINE B2 -88 110 1 7 1614 225 317 47 28 chr1 134917661 134917768 -62277664 - PB1D7 SINE Alu -11 109 1 7 1614 1132 192 9 23 chr1 134917913 134918131 -62277301 + B3 SINE B2 1 215 -1 7 1614 1293 69 58 0 chr1 134918143 134918317 -62277115 - B2_Mm1t SINE B2 -9 184 1 7 1614 220 143 24 0 chr1 134918386 134918428 -62277004 + A-rich Low_complexity Low_complexity 2 44 0 7 1614 715 158 33 0 chr1 134918557 134918677 -62276755 + B1_Mus2 SINE Alu 6 129 -18 7 1614 1349 61 0 53 chr1 134918757 134918947 -62276485 + B2_Mm2 SINE B2 1 180 -15 7 1614 1701 26 0 0 chr1 134918947 134919140 -62276292 + B2_Mm1a SINE B2 1 193 0 7 1614 1109 29 7 42 chr1 134919490 134919634 -62275798 + B1_Mus1 SINE Alu 1 139 -9 7 1614 498 17 0 0 chr1 134919634 134919693 -62275739 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 7 1614 261 0 0 0 chr1 134919694 134919723 -62275709 + (CCAA)n Simple_repeat Simple_repeat 1 29 0 7 1614 8020 67 21 1 chr1 134919767 134920851 -62274581 + L1_Mus3 LINE L1 5530 6635 -3 7 1614 437 220 43 21 chr1 134921216 134921309 -62274123 + B1_Mur1 SINE Alu 41 135 -14 7 1614 315 0 0 0 chr1 134921309 134921344 -62274088 + (TAA)n Simple_repeat Simple_repeat 3 37 0 7 1614 23 0 0 0 chr1 134921386 134921409 -62274023 + AT_rich Low_complexity Low_complexity 1 23 0 7 1614 485 179 250 25 chr1 134922106 134922226 -62273206 - B1_Mus2 SINE Alu 0 147 1 7 1614 1164 43 0 21 chr1 134922256 134922400 -62273032 + B1_Mm SINE Alu 2 142 -5 7 1614 180 0 0 0 chr1 134922415 134922435 -62272997 + (G)n Simple_repeat Simple_repeat 1 20 0 7 1614 23 0 0 0 chr1 134923052 134923075 -62272357 + AT_rich Low_complexity Low_complexity 1 23 0 7 1614 213 260 123 80 chr1 134923075 134923238 -62272194 - L3 LINE CR1 -325 4164 3995 7 1614 1006 45 65 29 chr1 134923243 134923382 -62272050 - B1_Mus2 SINE Alu -3 144 1 7 1614 623 230 7 20 chr1 134923535 134923686 -62271746 - B1_Mur2 SINE Alu 0 149 1 7 1614 322 288 66 29 chr1 134923900 134924036 -62271396 - B1F SINE Alu -7 142 2 7 1614 220 222 0 0 chr1 134924036 134924090 -62271342 + B1_Mur1 SINE Alu 91 144 -5 7 1614 973 62 93 0 chr1 134924092 134924221 -62271211 + B1_Mm SINE Alu 1 141 -6 8 1614 1328 136 55 14 chr1 134924233 134924450 -62270982 - URR1A DNA MER1_type 0 226 1 8 1614 466 156 69 69 chr1 134924674 134924805 -62270627 - RMER10A LTR ERVL -47 395 265 8 1614 914 209 10 56 chr1 134924904 134925102 -62270330 + B3 SINE B2 1 189 -27 8 1614 1458 189 172 12 chr1 134925103 134925446 -62269986 - RMER10B LTR ERVL 0 398 1 8 1614 670 166 73 22 chr1 134925475 134925611 -62269821 - B1_Mur2 SINE Alu -1 148 6 8 1614 1192 41 0 13 chr1 134925673 134925822 -62269610 + B1_Mus2 SINE Alu 1 147 0 8 1614 204 40 0 0 chr1 134925822 134925847 -62269585 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1614 347 273 33 22 chr1 134925956 134926046 -62269386 - RSINE1 SINE B4 -69 96 6 8 1614 1107 83 7 0 chr1 134926121 134926266 -62269166 + B1_Mus2 SINE Alu 2 147 0 8 1614 464 205 16 41 chr1 134926285 134926407 -62269025 + PB1D9 SINE Alu 2 120 0 8 1614 261 118 0 0 chr1 134926672 134926723 -62268709 + (T)n Simple_repeat Simple_repeat 1 51 0 8 1614 1155 68 0 7 chr1 134926723 134926871 -62268561 - B1_Mus2 SINE Alu 0 147 1 8 1614 1854 152 130 2 chr1 134926974 134927383 -62268049 - RMER4A LTR ERVK 0 466 6 8 1614 349 262 197 22 chr1 134927428 134927611 -62267821 - B3 SINE B2 0 216 2 8 1614 490 157 28 38 chr1 134927615 134927721 -62267711 - B1_Mur1 SINE Alu 0 149 45 8 1614 634 232 5 134 chr1 134927756 134927965 -62267467 - B3A SINE B2 -16 182 1 8 1614 405 279 50 6 chr1 134928089 134928248 -62267184 - MLT1B LTR MaLR 0 390 225 8 1614 959 149 0 20 chr1 134928327 134928478 -62266954 - B1_Mur3 SINE Alu 0 149 2 8 1614 307 0 23 23 chr1 134928478 134928522 -62266910 + (TTA)n Simple_repeat Simple_repeat 3 46 0 8 1614 946 147 35 6 chr1 134928534 134928705 -62266727 + B2_Mm2 SINE B2 1 176 -19 8 1614 895 68 17 0 chr1 134928935 134929053 -62266379 - PB1D9 SINE Alu 0 120 1 8 1614 833 211 89 5 chr1 134929057 134929248 -62266184 - B3 SINE B2 -6 210 4 8 1614 246 304 151 46 chr1 134929292 134929444 -62265988 - B3A SINE B2 -16 182 15 8 1614 664 14 0 0 chr1 134930538 134930612 -62264820 + tRNA-Lys-AAA tRNA tRNA 1 74 -2 8 1614 656 14 0 0 chr1 134930903 134930976 -62264456 - tRNA-Lys-AAA tRNA tRNA -3 73 1 8 1614 826 95 0 16 chr1 134931318 134931446 -62263986 - B1_Mm SINE Alu 0 147 22 8 1614 257 0 30 0 chr1 134931539 134931572 -62263860 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 1614 679 27 312 18 chr1 134931572 134931674 -62263758 - B1_Mus2 SINE Alu -10 137 1 8 1614 294 269 31 31 chr1 134931751 134931847 -62263585 + B1F2 SINE Alu 28 123 -26 8 1614 282 29 0 0 chr1 134931858 134931893 -62263539 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1614 1074 208 58 245 chr1 134932245 134932505 -62262927 - MTD LTR MaLR 0 419 218 8 1614 660 185 80 15 chr1 134932505 134932642 -62262790 - B1_Mus1 SINE Alu -2 146 1 8 1614 1074 208 58 245 chr1 134932642 134932664 -62262768 - MTD LTR MaLR -202 217 210 8 1614 1331 113 5 10 chr1 134932664 134932860 -62262572 - B2_Mm2 SINE B2 0 195 1 8 1614 1074 208 58 245 chr1 134932860 134932887 -62262545 - MTD LTR MaLR -210 209 209 8 1614 1121 62 28 0 chr1 134932887 134933031 -62262401 - B1_Mus1 SINE Alu 0 148 1 8 1614 1074 208 58 245 chr1 134933031 134933234 -62262198 - MTD LTR MaLR -210 209 1 8 1614 618 82 174 0 chr1 134933373 134933471 -62261961 + B1_Mus2 SINE Alu 9 123 -24 8 1614 551 215 57 57 chr1 134933502 134933694 -62261738 + B3A SINE B2 1 192 -6 8 1614 2105 105 29 0 chr1 134933901 134934214 -62261218 - RLTR33 LTR ERVK 0 678 357 8 1614 2145 95 61 61 chr1 134934214 134934540 -62260892 - ORR1A3 LTR MaLR 0 326 1 8 1614 1075 198 42 25 chr1 134934540 134934563 -62260869 + RLTR33 LTR ERVK 437 459 -219 8 1614 3135 14 3 0 chr1 134934563 134934908 -62260524 - ORR1A0 LTR MaLR 0 346 1 8 1614 1075 198 42 25 chr1 134934908 134935122 -62260310 + RLTR33 LTR ERVK 460 678 0 8 1614 583 210 0 32 chr1 134935353 134935476 -62259956 - B1_Mur1 SINE Alu -29 120 2 8 1614 841 163 0 0 chr1 134935801 134935942 -62259490 + B1_Mus1 SINE Alu 2 142 -6 8 1614 402 74 0 0 chr1 134935942 134935996 -62259436 + (GGA)n Simple_repeat Simple_repeat 1 54 0 8 1614 557 220 72 83 chr1 134936238 134936431 -62259001 - B3A SINE B2 0 198 8 8 1614 278 227 101 20 chr1 134936459 134936558 -62258874 - PB1D10 SINE Alu -8 109 3 8 1614 207 0 0 0 chr1 134936634 134936657 -62258775 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1614 371 35 0 81 chr1 134936655 134936692 -62258740 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1614 1135 64 0 0 chr1 134936692 134936833 -62258599 - B1_Mus2 SINE Alu -6 141 1 8 1614 371 35 0 81 chr1 134936833 134936857 -62258575 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1614 756 137 140 18 chr1 134936878 134937042 -62258390 + B2_Mm2 SINE B2 5 188 -7 8 1614 223 293 70 47 chr1 134937042 134937128 -62258304 - PB1D10 SINE Alu -16 101 14 8 1614 367 299 132 36 chr1 134937179 134937429 -62258003 - L1MA9 LINE L1 -205 6107 5834 8 1614 288 0 0 0 chr1 134937434 134937466 -62257966 + (TTA)n Simple_repeat Simple_repeat 2 33 0 8 1614 711 99 99 0 chr1 134937469 134937580 -62257852 - B1_Mus1 SINE Alu -19 129 8 8 1614 282 293 47 47 chr1 134937588 134937717 -62257715 - L1MA9 LINE L1 -464 5827 5699 8 1614 388 239 33 0 chr1 134937720 134937812 -62257620 - B1F1 SINE Alu -38 111 17 8 1614 926 252 9 5 chr1 134937933 134938148 -62257284 + B3 SINE B2 1 216 0 8 1614 1090 37 82 0 chr1 134938231 134938366 -62257066 + B1_Mus2 SINE Alu 2 147 0 8 1614 547 234 78 96 chr1 134938487 134938705 -62256727 + B4 SINE B4 10 223 -69 8 1614 24 32 0 0 chr1 134938738 134938769 -62256663 + AT_rich Low_complexity Low_complexity 1 31 0 8 1614 476 292 88 65 chr1 134938829 134939045 -62256387 + ID_B1 SINE B4 2 222 -2 8 1614 290 286 91 81 chr1 134939055 134939241 -62256191 - MLT1D LTR MaLR -56 449 262 8 1614 274 206 106 21 chr1 134939268 134939362 -62256070 - MLT1D LTR MaLR -448 179 78 8 1614 705 168 0 19 chr1 134939495 134939653 -62255779 + CT-rich Low_complexity Low_complexity 2 156 0 8 1614 596 102 0 0 chr1 134939657 134939745 -62255687 - B1_Mus2 SINE Alu 0 147 60 8 1614 1102 119 55 22 chr1 134939745 134939926 -62255506 - B2_Mm2 SINE B2 -7 188 2 8 1614 1088 67 0 0 chr1 134939961 134940095 -62255337 - B1_Mus1 SINE Alu -13 135 2 8 1614 1675 36 0 0 chr1 134940359 134940551 -62254881 - B2_Mm1a SINE B2 -1 192 1 8 1614 180 0 0 0 chr1 134940617 134940637 -62254795 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1614 1027 109 0 0 chr1 134940637 134940774 -62254658 - B1_Mus2 SINE Alu -10 137 1 8 1614 402 245 36 9 chr1 134941052 134941163 -62254269 + B1F SINE Alu 30 143 -6 8 1614 294 289 0 53 chr1 134941422 134941517 -62253915 - B3A SINE B2 0 198 109 8 1614 249 93 36 18 chr1 134942498 134942553 -62252879 + (AGGGGG)n Simple_repeat Simple_repeat 5 60 0 8 1614 21 0 0 0 chr1 134942782 134942803 -62252629 + GC_rich Low_complexity Low_complexity 1 21 0 8 1614 216 67 0 0 chr1 134944955 134944985 -62250447 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 8 1614 1017 86 57 0 chr1 134944987 134945127 -62250305 - B1_Mus1 SINE Alu 0 148 1 8 1614 186 346 0 69 chr1 134945127 134945214 -62250218 + MIRc SINE MIR 174 254 -14 8 1614 344 312 26 31 chr1 134945938 134945950 -62249482 + CYRA11_Mm Unknown Y-chromosome 204 288 -329 8 1614 809 179 77 0 chr1 134945950 134946118 -62249314 - URR1A DNA MER1_type -41 185 5 8 1614 344 312 26 31 chr1 134946118 134946130 -62249302 + CYRA11_Mm Unknown Y-chromosome 289 394 -223 8 1614 325 254 71 20 chr1 134946170 134946297 -62249135 - B4 SINE B4 -14 278 78 8 1614 1055 50 0 0 chr1 134946487 134946626 -62248806 - B1_Mus2 SINE Alu 0 147 9 8 1614 406 249 38 84 chr1 134946522 134946686 -62248746 - MT2B LTR ERVL -320 264 105 8 1614 189 0 0 0 chr1 134947040 134947061 -62248371 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 8 1614 351 0 0 0 chr1 134947072 134947111 -62248321 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1614 626 199 114 0 chr1 134947222 134947353 -62248079 - B1_Mur1 SINE Alu 0 149 4 8 1614 876 179 65 65 chr1 134947645 134947666 -62247766 - B3 SINE B2 -30 186 170 8 1614 261 0 0 0 chr1 134947666 134947695 -62247737 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1614 876 179 65 65 chr1 134947695 134947858 -62247574 - B3 SINE B2 -47 169 2 8 1614 646 263 0 0 chr1 134947858 134947995 -62247437 + B1F SINE Alu 13 149 0 8 1614 1018 84 21 14 chr1 134948276 134948420 -62247012 - B1_Mus1 SINE Alu 0 148 4 8 1614 24 0 0 0 chr1 134948509 134948533 -62246899 + AT_rich Low_complexity Low_complexity 1 24 0 8 1614 486 310 49 0 chr1 134948534 134948676 -62246756 - B3A SINE B2 -3 195 47 8 1614 471 288 40 58 chr1 134948697 134948900 -62246532 - ID_B1 SINE B4 -59 233 42 8 1614 409 252 19 9 chr1 134948923 134949031 -62246401 - PB1D10 SINE Alu -8 109 1 8 1614 412 352 0 22 chr1 134949193 134949359 -62246073 + MIRb SINE MIR 11 175 -93 8 1614 342 0 0 0 chr1 134950079 134950117 -62245315 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1614 1190 68 0 13 chr1 134950778 134950928 -62244504 - B1_Mus1 SINE Alu 0 148 1 8 1614 28 29 0 0 chr1 134952023 134952058 -62243374 + AT_rich Low_complexity Low_complexity 1 35 0 8 1614 295 91 0 0 chr1 134952072 134952116 -62243316 - B2_Mm2 SINE B2 -94 101 58 8 1614 1178 89 71 6 chr1 134952150 134952319 -62243113 - B2_Mm2 SINE B2 -14 181 2 8 1614 1164 184 349 25 chr1 134952571 134952889 -62242543 - MTC LTR MaLR 0 421 1 8 1614 431 294 118 0 chr1 134953167 134953286 -62242146 + ID_B1 SINE B4 81 213 -11 9 1614 267 54 0 0 chr1 134953286 134953323 -62242109 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 9 1614 700 215 30 0 chr1 134953323 134953458 -62241974 + B1_Mur1 SINE Alu 6 144 -5 9 1614 468 121 0 32 chr1 134953488 134953582 -62241850 + GA-rich Low_complexity Low_complexity 2 92 0 9 1614 249 297 0 15 chr1 134954768 134954833 -62240599 - ID4 SINE ID -8 75 12 9 1614 190 261 113 93 chr1 134954917 134955111 -62240321 + MIR3 SINE MIR 1 198 -10 9 1614 764 229 9 9 chr1 134955391 134955548 -62239884 - ID_B1 SINE B4 -49 243 84 9 1614 875 215 62 52 chr1 134955596 134955807 -62239625 - B3 SINE B2 -2 214 2 9 1614 1143 68 0 7 chr1 134955851 134955998 -62239434 + B1_Mus1 SINE Alu 1 146 -2 9 1614 224 30 30 0 chr1 134955998 134956031 -62239401 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1614 305 344 159 0 chr1 134956244 134956439 -62238993 - L2 LINE L2 -547 2872 2647 9 1614 551 283 7 28 chr1 134956764 134956906 -62238526 + RSINE1 SINE B4 13 151 -14 9 1614 1087 118 25 46 chr1 134957861 134958057 -62237375 - B2_Mm2 SINE B2 -3 192 1 9 1614 237 186 34 39 chr1 134958338 134958517 -62236915 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1614 268 271 41 14 chr1 134958542 134958688 -62236744 + (CA)n Simple_repeat Simple_repeat 1 150 0 9 1614 509 236 63 17 chr1 134958688 134958843 -62236589 + ID_B1 SINE B4 67 220 -4 9 1614 22 0 0 0 chr1 134959098 134959120 -62236312 + AT_rich Low_complexity Low_complexity 1 22 0 9 1614 444 37 0 0 chr1 134959255 134959309 -62236123 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 9 1614 1023 72 58 0 chr1 134959309 134959447 -62235985 - B1_Mus2 SINE Alu 0 147 2 9 1614 308 284 9 9 chr1 134959670 134959780 -62235652 - L1ME2 LINE L1 -2 6162 6053 9 1614 237 189 42 42 chr1 134959786 134959858 -62235574 + B4 SINE B4 2 73 -219 9 1614 281 338 38 6 chr1 134959969 134960127 -62235305 - L1ME2 LINE L1 -219 5960 5798 9 1614 290 289 0 26 chr1 134960153 134960231 -62235201 - ID_B1 SINE B4 0 224 149 9 1614 458 179 61 78 chr1 134960220 134960233 -62235199 + MT2B LTR ERVL 145 155 -446 9 1614 855 53 0 0 chr1 134960233 134960346 -62235086 + B1_Mus2 SINE Alu 1 113 -34 9 1614 607 239 99 0 chr1 134960347 134960489 -62234943 - ID_B1 SINE B4 -63 161 6 9 1614 2218 116 6 58 chr1 134960552 134960899 -62234533 - ORR1A4 LTR MaLR 0 329 1 9 1614 377 213 40 0 chr1 134960969 134961044 -62234388 - ID4 SINE ID -4 79 2 9 1614 228 284 95 0 chr1 134961108 134961182 -62234250 - L1ME2 LINE L1 -566 5608 5528 9 1614 189 0 0 0 chr1 134961222 134961243 -62234189 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 9 1614 451 159 101 11 chr1 134961243 134961332 -62234100 - B1_Mur4 SINE Alu -11 139 43 9 1614 1231 198 9 0 chr1 134961361 134961573 -62233859 - B3 SINE B2 -2 214 1 9 1614 329 269 65 0 chr1 134961583 134961691 -62233741 - PB1D10 SINE Alu -2 115 1 9 1614 268 296 41 50 chr1 134961832 134961953 -62233479 - RSINE1 SINE B4 -1 164 45 9 1614 1219 157 25 0 chr1 134962011 134962215 -62233217 + URR1B DNA MER1_type 1 209 -16 9 1614 234 267 0 62 chr1 134962283 134962347 -62233085 - ID4_ SINE ID -7 76 17 9 1614 197 200 63 16 chr1 134964274 134964336 -62231096 - MIR SINE MIR -112 96 29 9 1614 206 143 47 16 chr1 134964547 134964611 -62230821 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1614 226 290 0 0 chr1 134965583 134965645 -62229787 + CT-rich Low_complexity Low_complexity 1 62 0 9 1614 387 0 0 0 chr1 134966729 134966772 -62228660 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1614 438 69 0 0 chr1 134967036 134967094 -62228338 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1614 481 184 0 30 chr1 134967186 134967287 -62228145 + B1_Mur1 SINE Alu 51 148 -1 9 1614 213 65 0 0 chr1 134967288 134967319 -62228113 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1614 205 229 21 0 chr1 134969185 134969233 -62226199 + MIR3 SINE MIR 110 158 -50 9 1614 652 154 17 0 chr1 134971603 134971720 -62223712 - URR1B DNA MER1_type 0 225 107 9 1614 243 0 0 0 chr1 134971726 134971753 -62223679 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 9 1614 1046 65 37 43 chr1 134971753 134971915 -62223517 - B2_Mm2 SINE B2 -34 161 1 9 1614 1242 54 0 0 chr1 134971953 134972100 -62223332 - B1_Mus2 SINE Alu 0 147 1 9 1614 222 62 0 0 chr1 134972562 134972594 -62222838 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1614 742 176 65 14 chr1 134972938 134973076 -62222356 + B1_Mur1 SINE Alu 4 148 -1 9 1614 591 177 55 24 chr1 134974148 134974275 -62221157 + B1_Mur2 SINE Alu 19 149 0 9 1614 432 0 0 0 chr1 134974900 134974948 -62220484 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1614 603 218 21 5 chr1 134975272 134975461 -62219971 - B3 SINE B2 0 195 1 9 1614 411 98 0 0 chr1 134975564 134975625 -62219807 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 1614 1255 183 19 28 chr1 134975743 134975957 -62219475 - B3 SINE B2 0 216 5 9 1614 207 254 18 0 chr1 134976917 134976972 -62218460 + C-rich Low_complexity Low_complexity 4 59 0 9 1614 438 20 0 0 chr1 134977150 134977201 -62218231 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1614 473 265 179 16 chr1 134978053 134978237 -62217195 + ID_B1 SINE B4 1 214 -10 9 1614 255 281 111 11 chr1 134978976 134979066 -62216366 + B1F SINE Alu 21 119 -30 9 1614 846 107 0 0 chr1 134979230 134979352 -62216080 - B1_Mur4 SINE Alu -19 131 10 9 1614 390 252 46 9 chr1 134979255 134979363 -62216069 - B4A SINE B4 -98 194 83 9 1614 355 332 20 2 chr1 134979616 134979737 -62215695 + B1F SINE Alu 1 127 -22 9 1614 618 51 0 0 chr1 134980307 134980385 -62215047 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 9 1614 359 226 9 42 chr1 134980388 134980486 -62214946 - PB1D7 SINE Alu -42 107 8 9 1614 327 25 0 0 chr1 134982983 134983023 -62212409 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 9 1614 529 111 0 53 chr1 134983023 134983107 -62212325 - B1_Mur3 SINE Alu -9 140 60 9 1614 183 80 0 0 chr1 134983123 134983148 -62212284 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1614 672 225 0 28 chr1 134983164 134983306 -62212126 - B1F1 SINE Alu -11 138 1 9 1614 192 367 82 16 chr1 134984563 134984685 -62210747 - MER5B DNA MER1_type -48 130 1 9 1614 1001 144 0 14 chr1 134985259 134985407 -62210025 + B1_Mur4 SINE Alu 3 148 -2 9 1614 999 130 11 68 chr1 134985407 134985597 -62209835 + B2_Mm2 SINE B2 3 181 -14 9 1614 801 210 14 0 chr1 134985652 134985795 -62209637 - B1_Mur1 SINE Alu 0 149 5 9 1614 247 264 131 8 chr1 134985799 134985929 -62209503 - L1ME2z LINE L1 -236 6208 6063 9 1614 588 199 68 8 chr1 134988960 134989092 -62206340 + B1F SINE Alu 4 143 -6 9 1614 356 138 0 15 chr1 134989202 134989268 -62206164 + CT-rich Low_complexity Low_complexity 1 65 0 9 1614 283 282 0 0 chr1 134989282 134989353 -62206079 - ID4 SINE ID -11 72 2 9 1614 248 362 124 7 chr1 134989359 134989512 -62205920 + L3 LINE CR1 4157 4327 -162 9 1614 247 348 0 0 chr1 134989691 134989760 -62205672 + ID4_ SINE ID 12 80 -3 9 1614 413 257 57 0 chr1 134989867 134989972 -62205460 + PB1D7 SINE Alu 1 111 -9 9 1614 181 0 69 0 chr1 134990636 134990665 -62204767 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 9 1614 382 184 89 2 chr1 134990737 134990837 -62204595 + PB1D7 SINE Alu 1 107 -13 9 1614 267 322 75 42 chr1 134992006 134992126 -62203306 + B4 SINE B4 69 192 -100 9 1614 408 238 27 62 chr1 134992031 134992143 -62203289 + PB1D9 SINE Alu 12 119 -1 9 1614 819 187 11 21 chr1 134992324 134992507 -62202925 + B3 SINE B2 2 178 -15 9 1614 1244 48 0 7 chr1 134992531 134992679 -62202753 + B1_Mus2 SINE Alu 1 147 0 9 1614 509 180 0 57 chr1 134993505 134993611 -62201821 - PB1D10 SINE Alu 0 117 18 9 1614 280 280 174 43 chr1 134993611 134993643 -62201789 - ID_B1 SINE B4 0 224 69 9 1614 645 115 38 9 chr1 134993998 134994103 -62201329 - B1_Mur1 SINE Alu -7 142 35 9 1614 686 324 19 39 chr1 134994172 134994432 -62201000 - B4A SINE B4 -14 278 24 9 1614 1164 51 0 0 chr1 134994909 134995046 -62200386 + B1_Mus1 SINE Alu 2 138 -10 9 1614 766 136 0 0 chr1 134996480 134996598 -62198834 - B1_Mus1 SINE Alu -30 118 1 9 1614 723 199 79 29 chr1 134996681 134996821 -62198611 - B1_Mus2 SINE Alu 0 147 1 9 1614 429 250 83 0 chr1 134997091 134997187 -62198245 + PB1D7 SINE Alu 5 108 -12 9 1614 313 220 27 9 chr1 134998349 134998459 -62196973 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 9 1614 227 279 0 14 chr1 134998521 134998590 -62196842 + L1MB2 LINE L1 5911 5978 -193 9 1614 311 0 26 0 chr1 134998654 134998693 -62196739 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1614 647 201 64 7 chr1 134999537 134999677 -62195755 - B1_Mus1 SINE Alu 0 148 1 9 1614 426 303 24 16 chr1 134999679 134999803 -62195629 - B1_Mur1 SINE Alu -18 131 7 9 1614 574 232 34 34 chr1 135001201 135001348 -62194084 + B1_Mus1 SINE Alu 2 148 0 1 1614 230 264 144 68 chr1 135001748 135001866 -62193566 - PB1D10 SINE Alu -19 128 2 2 1614 243 208 113 0 chr1 135001975 135002028 -62193404 - B3A SINE B2 -47 151 93 3 1614 1079 74 179 0 chr1 135002050 135002212 -62193220 - B2_Mm2 SINE B2 -4 191 1 4 1614 364 167 45 0 chr1 135002402 135002468 -62192964 + B1F SINE Alu 24 92 -57 5 1614 26 0 0 0 chr1 135003091 135003117 -62192315 + AT_rich Low_complexity Low_complexity 1 26 0 6 1614 239 98 39 0 chr1 135003202 135003253 -62192179 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 7 1614 852 121 0 0 chr1 135004011 135004143 -62191289 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 8 201 588 167 18 36 chr1 135004146 135004258 -62191174 - PB1D9 SINE Alu -10 110 1 9 1615 283 250 0 62 chr1 135004273 135004354 -62191078 - ID4 SINE ID -6 77 2 1 1615 513 171 36 0 chr1 135004445 135004545 -62190887 - PB1D9 SINE Alu -1 119 25 1 1615 699 245 7 14 chr1 135004698 135004843 -62190589 - ID_B1 SINE B4 0 224 81 1 1615 336 303 117 78 chr1 135004863 135005017 -62190415 + RSINE1 SINE B4 4 163 -2 1 1615 1442 63 16 5 chr1 135005665 135005856 -62189576 - B2_Mm2 SINE B2 -1 194 2 1 1615 1270 116 5 5 chr1 135006072 135006262 -62189170 + B2_Mm1a SINE B2 3 192 -1 1 1615 220 288 76 0 chr1 135006549 135006615 -62188817 + B4A SINE B4 14 84 -208 1 1615 423 117 0 0 chr1 135006769 135006829 -62188603 - ORR1A2 LTR MaLR 0 327 268 1 1615 240 118 0 0 chr1 135006817 135006851 -62188581 - PB1D9 SINE Alu -49 71 38 1 1615 207 0 0 0 chr1 135007146 135007169 -62188263 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 1615 1153 51 22 0 chr1 135007171 135007309 -62188123 - B1_Mus1 SINE Alu -6 142 2 2 1615 480 258 11 0 chr1 135007412 135007505 -62187927 - B1F2 SINE Alu -53 96 3 2 1615 7581 37 1 0 chr1 135008025 135009070 -62186362 + L1Md_F2 LINE L1 5426 6471 -111 2 1615 1178 61 0 0 chr1 135009091 135009238 -62186194 + B1_Mm SINE Alu 1 147 0 2 1615 432 97 0 0 chr1 135009507 135009569 -62185863 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1615 598 289 8 0 chr1 135009593 135009721 -62185711 - RSINE1 SINE B4 -33 132 4 2 1615 1213 61 0 7 chr1 135010103 135010251 -62185181 + B1_Mm SINE Alu 1 147 0 2 1615 216 0 0 0 chr1 135010268 135010292 -62185140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1615 525 196 19 6 chr1 135010313 135010421 -62185011 + PB1D7 SINE Alu 25 127 -21 2 1615 259 305 60 97 chr1 135011033 135011171 -62184261 + L1_Rod LINE L1 1008 1140 -6468 2 1615 1145 35 14 0 chr1 135011171 135011315 -62184117 - B1_Mus2 SINE Alu 0 147 2 3 1615 259 305 60 97 chr1 135011315 135011474 -62183958 + L1_Rod LINE L1 1141 1294 -6314 2 1615 397 276 118 76 chr1 135011485 135011748 -62183684 + B4 SINE B4 8 281 -11 3 1615 681 281 94 22 chr1 135011850 135011863 -62183569 + L1_Mur3 LINE L1 1302 1314 -4566 3 1615 956 70 245 19 chr1 135011863 135012022 -62183410 + B2_Mm2 SINE B2 1 195 0 3 1615 681 283 94 22 chr1 135012022 135012366 -62183066 + L1_Mur3 LINE L1 1315 1683 -4194 3 1615 1113 100 50 0 chr1 135012366 135012526 -62182906 + B2_Mm2 SINE B2 2 169 -26 3 1615 180 0 0 0 chr1 135012526 135012546 -62182886 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1615 1189 62 0 0 chr1 135012567 135012711 -62182721 - B1_Mus2 SINE Alu -2 145 2 3 1615 802 235 10 74 chr1 135012740 135012942 -62182490 + B3A SINE B2 5 193 -5 3 1615 853 235 69 10 chr1 135012962 135013164 -62182268 + B3 SINE B2 1 214 -2 3 1615 328 242 202 32 chr1 135013169 135013327 -62182105 + L1_Rod LINE L1 1676 1860 -3987 2 1615 1641 157 17 14 chr1 135013335 135013632 -62181800 - RMER6A LTR ERVK -8 748 451 3 1615 1244 64 86 6 chr1 135013635 135013809 -62181623 - B2_Mm2 SINE B2 -7 188 1 4 1615 1248 72 12 0 chr1 135013818 135013985 -62181447 - B2_Mm1t SINE B2 -20 173 5 4 1615 1740 172 30 136 chr1 135013985 135014464 -62180968 - RMER6A LTR ERVK -252 504 57 3 1615 2064 159 17 78 chr1 135014521 135014595 -62180837 - ORR1B1 LTR MaLR -8 386 338 4 1615 1194 41 7 0 chr1 135014595 135014740 -62180692 - B1_Mus2 SINE Alu 0 147 2 4 1615 2064 159 17 78 chr1 135014740 135015075 -62180357 - ORR1B1 LTR MaLR -57 337 2 4 1615 315 348 42 0 chr1 135015281 135015399 -62180033 - B3A SINE B2 -38 160 38 4 1615 766 225 0 0 chr1 135015402 135015540 -62179892 + B1F2 SINE Alu 1 138 -11 4 1615 219 225 0 0 chr1 135015581 135015621 -62179811 - B3A SINE B2 -157 41 2 4 1615 881 195 141 0 chr1 135015653 135015838 -62179594 + B3 SINE B2 3 213 -3 4 1615 191 282 114 34 chr1 135016919 135017007 -62178425 - L2c LINE L2 -39 3348 3254 4 1615 501 250 71 43 chr1 135017043 135017225 -62178207 + MER2 DNA MER2_type 36 222 -123 4 1615 229 248 124 72 chr1 135017225 135017335 -62178097 + PB1D10 SINE Alu 1 116 -1 5 1615 455 178 19 19 chr1 135017382 135017485 -62177947 - ID_B1 SINE B4 -1 223 121 5 1615 364 252 81 73 chr1 135017559 135017683 -62177749 + MT2B LTR ERVL 133 257 -344 5 1615 556 154 44 0 chr1 135017593 135017684 -62177748 + B1_Mur4 SINE Alu 12 106 -44 5 1615 476 274 185 0 chr1 135017689 135017835 -62177597 - B3 SINE B2 -1 215 43 5 1615 547 210 13 121 chr1 135018196 135018353 -62177079 + B3 SINE B2 68 207 -9 5 1615 25 31 0 0 chr1 135018441 135018473 -62176959 + AT_rich Low_complexity Low_complexity 1 32 0 5 1615 341 111 19 0 chr1 135018482 135018536 -62176896 - B2_Mm2 SINE B2 -94 101 47 5 1615 1102 80 13 0 chr1 135018606 135018756 -62176676 - B2_Mm1t SINE B2 -14 179 28 5 1615 748 193 0 91 chr1 135018928 135018972 -62176460 - B1_Mur4 SINE Alu 0 150 111 5 1615 1220 35 14 0 chr1 135018972 135019114 -62176318 + B1_Mm SINE Alu 1 144 -3 6 1615 279 0 0 0 chr1 135019114 135019145 -62176287 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1615 748 193 0 91 chr1 135019145 135019264 -62176168 - B1_Mur4 SINE Alu -40 110 2 5 1615 462 206 64 35 chr1 135019671 135019812 -62175620 - ORR1D2 LTR MaLR -22 348 204 6 1615 720 215 63 68 chr1 135019820 135020007 -62175425 - ORR1D2 LTR MaLR -119 251 66 6 1615 282 244 10 72 chr1 135020007 135020104 -62175328 - RLTR28B LTR ERVL 0 524 434 6 1615 784 218 78 55 chr1 135020124 135020353 -62175079 - RLTR28B LTR ERVL -176 305 69 6 1615 830 98 0 201 chr1 135020353 135020532 -62174900 + B1_Mus1 SINE Alu 1 143 -5 6 1615 407 19 19 0 chr1 135020537 135020589 -62174843 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1615 784 218 78 55 chr1 135020589 135020610 -62174822 - RLTR28B LTR ERVL -418 63 44 6 1615 266 219 47 0 chr1 135020610 135020674 -62174758 + MER2 DNA MER2_type 272 338 -7 4 1615 506 239 9 9 chr1 135020858 135020972 -62174460 - ID_B1 SINE B4 -20 204 91 6 1615 252 171 0 0 chr1 135021209 135021250 -62174182 - L2 LINE L2 -967 2452 2412 6 1615 524 15 15 0 chr1 135021387 135021452 -62173980 + (GGA)n Simple_repeat Simple_repeat 1 66 0 6 1615 754 264 191 28 chr1 135021570 135021890 -62173542 - MLT1C LTR MaLR -93 374 3 6 1615 1086 56 205 0 chr1 135021903 135022064 -62173368 + B2_Mm2 SINE B2 2 195 0 7 1615 1141 62 0 46 chr1 135022067 135022220 -62173212 + B1_Mus1 SINE Alu 3 148 0 7 1615 304 82 33 0 chr1 135022220 135022281 -62173151 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 7 1615 879 244 30 30 chr1 135022292 135022491 -62172941 + B3 SINE B2 14 212 -4 7 1615 708 125 10 0 chr1 135022684 135022788 -62172644 - B2_Mm2 SINE B2 -88 107 3 7 1615 278 342 115 25 chr1 135022933 135023176 -62172256 - L2 LINE L2 -1897 1522 1258 7 1615 261 148 145 16 chr1 135023237 135023299 -62172133 - B1F SINE Alu 0 149 80 7 1615 220 261 15 30 chr1 135023369 135023436 -62171996 + B4A SINE B4 80 145 -147 7 1615 492 224 28 9 chr1 135023384 135023492 -62171940 + PB1D10 SINE Alu 8 117 0 7 1615 866 103 229 13 chr1 135023496 135023653 -62171779 + B2_Mm2 SINE B2 2 192 -3 7 1615 689 167 340 0 chr1 135023669 135023825 -62171607 + B3 SINE B2 1 209 -7 8 1615 929 146 6 6 chr1 135024327 135024493 -62170939 - Lx2 LINE L1 0 6997 6832 8 1615 445 327 71 26 chr1 135024571 135024725 -62170707 + RSINE1 SINE B4 2 162 -3 8 1615 662 214 16 0 chr1 135024768 135024894 -62170538 + B1_Mur3 SINE Alu 2 129 -20 8 1615 502 199 120 42 chr1 135024894 135025036 -62170396 + RCHARR1 DNA MER1_type 524 676 -298 8 1615 730 240 122 25 chr1 135025137 135025236 -62170196 + RCHARR1 DNA MER1_type 661 761 -213 8 1615 948 203 91 0 chr1 135025236 135025260 -62170172 - B3 SINE B2 0 216 185 8 1615 180 0 0 0 chr1 135025260 135025280 -62170152 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 8 1615 948 203 91 0 chr1 135025280 135025452 -62169980 - B3 SINE B2 -32 184 3 8 1615 730 240 122 25 chr1 135025452 135025638 -62169794 + RCHARR1 DNA MER1_type 762 973 -1 8 1615 186 366 34 43 chr1 135026039 135026156 -62169276 - L2b LINE L2 -185 3190 3075 8 1615 212 211 27 27 chr1 135026715 135026747 -62168685 + A-rich Low_complexity Low_complexity 6 36 0 8 1615 651 207 43 0 chr1 135026747 135026887 -62168545 + B1_Mur2 SINE Alu 3 148 -1 8 1615 215 233 12 12 chr1 135026887 135026940 -62168492 + A-rich Low_complexity Low_complexity 1 53 0 9 1615 451 178 10 91 chr1 135026958 135027057 -62168375 + PB1D10 SINE Alu 27 117 0 9 1615 567 234 55 31 chr1 135030592 135030720 -62164712 + B1_Mur1 SINE Alu 12 142 -7 9 1615 284 204 307 9 chr1 135030796 135030910 -62164522 - B1F SINE Alu -1 148 1 9 1615 1163 75 0 0 chr1 135031185 135031332 -62164100 - B1_Mus1 SINE Alu 0 148 2 9 1615 24 0 0 0 chr1 135031463 135031487 -62163945 + AT_rich Low_complexity Low_complexity 1 24 0 9 1615 249 341 0 58 chr1 135031764 135031851 -62163581 - ID4_ SINE ID 0 83 2 9 1615 1085 44 0 15 chr1 135031890 135032027 -62163405 + B1_Mm SINE Alu 2 136 -11 9 1615 1411 75 27 0 chr1 135032237 135032424 -62163008 - B2_Mm1t SINE B2 0 193 2 9 1615 352 314 91 29 chr1 135032494 135032704 -62162728 + MIR SINE MIR 40 262 0 9 1615 236 220 20 0 chr1 135032893 135032943 -62162489 - ID_B1 SINE B4 0 224 174 1 1615 392 236 211 0 chr1 135033682 135033805 -62161627 - B1F2 SINE Alu 0 149 1 1 1615 347 281 11 33 chr1 135033871 135033963 -62161469 + B1F2 SINE Alu 60 149 0 1 1615 224 250 0 233 chr1 135033975 135034095 -62161337 + PB1 SINE Alu 34 125 -2 1 1615 433 173 13 13 chr1 135034101 135034177 -62161255 + ID4_ SINE ID 4 79 -4 1 1615 229 222 222 0 chr1 135034350 135034404 -62161028 - PB1D7 SINE Alu -10 110 45 1 1615 670 109 30 0 chr1 135034517 135034618 -62160814 - BC1_Mm scRNA scRNA -47 105 2 1 1615 520 237 104 22 chr1 135034630 135034764 -62160668 - ID_B1 SINE B4 0 224 80 1 1615 225 0 0 0 chr1 135036021 135036046 -62159386 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1 1615 23 0 0 0 chr1 135036189 135036212 -62159220 + AT_rich Low_complexity Low_complexity 1 23 0 1 1615 357 191 43 14 chr1 135036805 135036874 -62158558 - B3A SINE B2 -45 153 83 1 1615 593 184 105 38 chr1 135036902 135037080 -62158352 - B2_Mm2 SINE B2 -5 190 1 1 1615 215 214 357 0 chr1 135037212 135037296 -62158136 - B3A SINE B2 -75 123 10 1 1615 284 347 37 24 chr1 135037259 135037445 -62157987 - RSINE1 SINE B4 -104 188 3 1 1615 27 21 0 41 chr1 135037448 135037479 -62157953 + AT_rich Low_complexity Low_complexity 1 30 0 1 1615 1061 65 65 0 chr1 135037479 135037617 -62157815 - B1_Mus1 SINE Alu -1 147 1 1 1615 27 21 0 41 chr1 135037617 135037634 -62157798 + AT_rich Low_complexity Low_complexity 1 17 0 1 1615 340 203 0 42 chr1 135037685 135037741 -62157691 - URR1B DNA MER1_type -1 224 169 1 1615 759 151 69 35 chr1 135037741 135037885 -62157547 - B1_Mur3 SINE Alu 0 149 1 1 1615 340 203 0 42 chr1 135037885 135037900 -62157532 - URR1B DNA MER1_type -57 168 156 1 1615 593 210 228 0 chr1 135037929 135038091 -62157341 - B3 SINE B2 -17 199 1 1 1615 515 200 17 162 chr1 135038103 135038276 -62157156 - B1F2 SINE Alu -1 148 1 1 1615 1071 116 0 7 chr1 135038513 135038661 -62156771 + B1_Mus2 SINE Alu 1 147 0 1 1615 378 0 0 0 chr1 135038847 135038889 -62156543 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1 1615 261 0 0 0 chr1 135038903 135038932 -62156500 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1615 1334 44 0 0 chr1 135038932 135039091 -62156341 - B2_Mm1a SINE B2 -33 160 2 1 1615 1554 57 0 15 chr1 135039093 135039290 -62156142 - B2_Mm2 SINE B2 -1 194 1 1 1615 588 205 38 0 chr1 135039311 135039460 -62155972 - B3 SINE B2 -6 192 30 1 1615 1048 230 96 101 chr1 135039488 135039708 -62155724 - MTD LTR MaLR -32 387 160 1 1615 1216 62 0 0 chr1 135039708 135039854 -62155578 + B1_Mus2 SINE Alu 2 147 0 1 1615 1048 230 96 101 chr1 135039854 135040010 -62155422 - MTD LTR MaLR -260 159 13 1 1615 225 0 0 0 chr1 135040010 135040035 -62155397 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1615 328 161 0 16 chr1 135040284 135040350 -62155082 + B1_Mur3 SINE Alu 76 137 -12 1 1615 319 165 24 0 chr1 135040386 135040471 -62154961 + GA-rich Low_complexity Low_complexity 1 87 0 1 1615 1149 68 7 0 chr1 135040652 135040798 -62154634 + B1_Mus2 SINE Alu 1 147 0 1 1615 193 143 35 18 chr1 135040800 135040857 -62154575 + A-rich Low_complexity Low_complexity 2 59 0 1 1615 658 223 74 0 chr1 135040857 135040978 -62154454 - B1_Mur1 SINE Alu -13 136 7 1 1615 27 0 0 0 chr1 135041002 135041029 -62154403 + AT_rich Low_complexity Low_complexity 1 27 0 1 1615 1051 63 48 27 chr1 135041042 135041175 -62154257 + B1_Mur4 SINE Alu 2 138 -12 1 1615 252 0 0 0 chr1 135041175 135041203 -62154229 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1615 1051 63 48 27 chr1 135041203 135041215 -62154217 + B1_Mur4 SINE Alu 139 150 0 1 1615 820 204 74 0 chr1 135041229 135041405 -62154027 - B3 SINE B2 -24 192 4 1 1615 1242 106 16 11 chr1 135041410 135041601 -62153831 - B2_Mm1t SINE B2 -1 192 1 1 1615 643 203 36 43 chr1 135041605 135041744 -62153688 - B1_Mus1 SINE Alu 0 148 11 1 1615 276 291 86 19 chr1 135041650 135041755 -62153677 - B4A SINE B4 -98 194 83 1 1615 1207 49 0 0 chr1 135041761 135041905 -62153527 - B1_Mus2 SINE Alu -1 146 3 1 1615 247 271 117 36 chr1 135041936 135042047 -62153385 + PB1D7 SINE Alu 1 120 0 1 1615 218 189 0 0 chr1 135042053 135042090 -62153342 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1615 288 77 0 0 chr1 135043123 135043162 -62152270 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1615 234 0 0 0 chr1 135043478 135043504 -62151928 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1615 338 0 24 0 chr1 135043712 135043754 -62151678 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 1615 1077 54 8 0 chr1 135043754 135043884 -62151548 - B1_Mm SINE Alu -12 135 5 1 1615 1010 130 0 14 chr1 135044389 135044537 -62150895 - B1_Mus1 SINE Alu -1 147 2 1 1615 1069 177 91 0 chr1 135045001 135045199 -62150233 - B3 SINE B2 0 216 1 1 1615 557 207 35 49 chr1 135045202 135045344 -62150088 - ID_B1 SINE B4 -1 223 84 1 1615 2215 132 76 0 chr1 135045346 135045703 -62149729 + ORR1B1 LTR MaLR 3 386 -8 1 1615 506 251 66 76 chr1 135045744 135045942 -62149490 + B3A SINE B2 2 197 -1 1 1615 1286 108 5 16 chr1 135045972 135046161 -62149271 + B2_Mm2 SINE B2 1 187 -8 1 1615 589 80 0 20 chr1 135046223 135046316 -62149116 - L1_Mus3 LINE L1 -1 6637 6547 1 1615 1546 32 38 0 chr1 135046316 135046501 -62148931 - B2_Mm1a SINE B2 -1 192 1 1 1615 1221 92 115 10 chr1 135046588 135046797 -62148635 - L1_Mus3 LINE L1 -1 6637 6407 1 1615 25 31 0 0 chr1 135046799 135046831 -62148601 + AT_rich Low_complexity Low_complexity 1 32 0 1 1615 677 191 84 9 chr1 135046831 135047009 -62148423 + B3 SINE B2 1 188 -7 1 1615 1299 82 39 0 chr1 135047018 135047200 -62148232 + B2_Mm2 SINE B2 2 190 -5 1 1615 212 172 0 17 chr1 135047220 135047279 -62148153 + (TGG)n Simple_repeat Simple_repeat 2 59 0 1 1615 485 204 0 10 chr1 135047305 135047404 -62148028 - B3A SINE B2 -99 99 2 1 1615 1251 96 32 0 chr1 135047434 135047621 -62147811 - B2_Mm2 SINE B2 -1 194 2 1 1615 323 160 0 20 chr1 135047657 135047708 -62147724 - B1F SINE Alu -99 50 1 1 1615 21 36 0 0 chr1 135047726 135047754 -62147678 + AT_rich Low_complexity Low_complexity 1 28 0 1 1615 272 191 0 0 chr1 135047758 135047800 -62147632 - B1_Mur1 SINE Alu -7 142 101 1 1615 1077 57 0 0 chr1 135047800 135047941 -62147491 + (TCTCC)n Simple_repeat Simple_repeat 1 141 0 1 1615 323 319 50 41 chr1 135048040 135048282 -62147150 - L1M4 LINE L1 -3321 2825 2582 1 1615 782 309 25 31 chr1 135048289 135048581 -62146851 + ID_B1 SINE B4 2 284 -8 1 1615 220 258 68 116 chr1 135049015 135049155 -62146277 + PB1D9 SINE Alu 1 142 -7 1 1615 438 196 0 138 chr1 135049179 135049309 -62146123 + MT2B LTR ERVL 153 264 -337 1 1615 1077 29 7 14 chr1 135049203 135049341 -62146091 + B1_Mus1 SINE Alu 10 146 -2 1 1615 279 368 8 0 chr1 135049366 135049491 -62145941 - B3A SINE B2 0 198 73 1 1615 247 333 216 29 chr1 135049494 135049633 -62145799 - RSINE1 SINE B4 0 165 1 1 1615 580 266 14 0 chr1 135049634 135049773 -62145659 - ID_B1 SINE B4 -1 223 83 1 1615 21 0 0 0 chr1 135049872 135049893 -62145539 + AT_rich Low_complexity Low_complexity 1 21 0 1 1615 1253 41 0 0 chr1 135049893 135050040 -62145392 - B1_Mm SINE Alu 0 147 1 1 1615 949 118 78 30 chr1 135050163 135050329 -62145103 + B2_Mm2 SINE B2 2 175 -20 1 1615 483 123 12 36 chr1 135050411 135050424 -62145008 - B1_Mur4 SINE Alu 0 150 140 1 1615 279 0 0 0 chr1 135050424 135050455 -62144977 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1615 483 141 12 37 chr1 135050455 135050538 -62144894 - B1_Mur4 SINE Alu -11 139 56 1 1615 533 205 71 0 chr1 135051707 135051819 -62143613 + PB1D9 SINE Alu 1 120 0 1 1615 401 280 121 0 chr1 135052005 135052137 -62143295 - L2b LINE L2 0 3375 3228 1 1615 279 0 0 0 chr1 135052321 135052352 -62143080 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1 1615 1210 61 0 0 chr1 135052352 135052495 -62142937 - B1_Mus1 SINE Alu 0 148 6 1 1615 787 61 77 17 chr1 135052614 135052731 -62142701 + B2_Mm2 SINE B2 1 124 -71 1 1615 207 0 0 0 chr1 135052748 135052771 -62142661 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1615 673 174 144 0 chr1 135052938 135052996 -62142436 + ID SINE ID 5 81 -143 1 1615 307 303 56 0 chr1 135052996 135053085 -62142347 + B1_Mm SINE Alu 1 94 -53 1 1615 837 150 34 92 chr1 135053146 135053352 -62142080 - B2_Mm2 SINE B2 0 195 2 1 1615 295 269 166 57 chr1 135053426 135053655 -62141777 - L2b LINE L2 -862 2557 2304 1 1615 442 242 16 0 chr1 135053760 135053864 -62141568 + PB1D10 SINE Alu 2 113 -34 1 1615 782 177 0 18 chr1 135055385 135055607 -62139825 + GA-rich Low_complexity Low_complexity 1 218 0 1 1615 1070 101 0 11 chr1 135056374 135056555 -62138877 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1615 1042 82 7 58 chr1 135056565 135056720 -62138712 - B1_Mus1 SINE Alu 0 148 2 1 1615 423 272 102 42 chr1 135056817 135057032 -62138400 - MLT1K LTR MaLR 0 595 368 1 1615 482 312 50 0 chr1 135057337 135057478 -62137954 - RSINE1 SINE B4 0 165 18 1 1615 585 241 14 42 chr1 135057480 135057623 -62137809 - B1_Mur2 SINE Alu -2 147 9 1 1615 257 378 18 26 chr1 135057527 135057641 -62137791 - B4 SINE B4 -101 191 79 1 1615 877 111 22 29 chr1 135057655 135057794 -62137638 - B1_Mur4 SINE Alu -11 139 2 1 1615 263 234 38 25 chr1 135057992 135058071 -62137361 + ID4 SINE ID 4 83 0 1 1615 288 170 0 0 chr1 135058137 135058190 -62137242 + A-rich Low_complexity Low_complexity 1 53 0 2 1615 505 317 55 58 chr1 135058259 135058534 -62136898 + B4A SINE B4 1 274 -18 2 1615 360 0 0 0 chr1 135058566 135058606 -62136826 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1615 327 306 83 9 chr1 135059177 135059345 -62136087 + MIRm SINE MIR 2 175 -33 2 1615 225 355 94 30 chr1 135059595 135059798 -62135634 - L2c LINE L2 -41 3346 3131 2 1615 210 208 20 40 chr1 135060142 135060192 -62135240 + CT-rich Low_complexity Low_complexity 6 54 0 2 1615 1228 41 0 0 chr1 135062248 135062394 -62133038 + B1_Mm SINE Alu 2 147 0 2 1615 220 288 0 15 chr1 135062425 135062492 -62132940 + B4A SINE B4 84 149 -143 2 1615 528 210 15 15 chr1 135062433 135062566 -62132866 + PB1 SINE Alu 7 125 -2 2 1615 687 139 34 25 chr1 135062625 135062743 -62132689 + PB1D9 SINE Alu 2 120 0 2 1615 282 115 0 0 chr1 135062779 135062831 -62132601 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1615 576 27 0 0 chr1 135062831 135062905 -62132527 - B1_Mus2 SINE Alu 0 147 74 2 1615 236 265 18 0 chr1 135065214 135065281 -62130151 + Lx2 LINE L1 5663 5752 -427 2 1615 633 137 93 39 chr1 135066068 135066197 -62129235 - B1_Mur1 SINE Alu -5 144 9 2 1615 410 291 108 0 chr1 135066930 135067078 -62128354 + MER3 DNA MER1_type 24 187 -22 2 1615 311 313 84 0 chr1 135067444 135067575 -62127857 - MIR3 SINE MIR -6 202 61 2 1615 188 330 88 18 chr1 135067603 135067717 -62127715 + MIRm SINE MIR 46 167 -109 2 1615 453 269 50 0 chr1 135068283 135068402 -62127030 + MIRb SINE MIR 19 143 -125 2 1615 1122 122 0 0 chr1 135068506 135068686 -62126746 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 2 1615 1149 118 0 0 chr1 135068706 135068884 -62126548 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 2 1615 2286 124 82 5 chr1 135069304 135069684 -62125748 + MTC LTR MaLR 3 411 -10 2 1615 473 248 41 8 chr1 135071248 135071370 -62124062 + B1F SINE Alu 5 130 -19 2 1615 201 74 0 0 chr1 135071439 135071466 -62123966 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2 1615 889 188 124 41 chr1 135071527 135071721 -62123711 - B3 SINE B2 -6 210 1 2 1615 601 228 118 0 chr1 135071731 135071858 -62123574 - B1_Mur1 SINE Alu -6 143 2 2 1615 660 201 116 47 chr1 135072118 135072290 -62123142 + B3A SINE B2 1 184 -14 2 1615 201 74 0 0 chr1 135073349 135073376 -62122056 + (GGGAGA)n Simple_repeat Simple_repeat 2 28 0 2 1615 185 353 118 0 chr1 135073442 135073527 -62121905 - MIRb SINE MIR -49 219 125 2 1615 1132 82 0 26 chr1 135073934 135074085 -62121347 + B1_Mus2 SINE Alu 1 147 0 2 1615 319 324 19 9 chr1 135074949 135075055 -62120377 - MIRc SINE MIR -125 143 37 2 1615 531 201 257 49 chr1 135076640 135076823 -62118609 - ID_B1 SINE B4 -2 222 2 2 1615 1112 74 0 39 chr1 135076961 135077115 -62118317 + B1_Mus1 SINE Alu 1 148 0 2 1615 359 134 0 29 chr1 135078761 135078830 -62116602 + G-rich Low_complexity Low_complexity 4 70 0 2 1615 506 167 189 16 chr1 135080838 135080960 -62114472 - B1_Mur1 SINE Alu -1 148 6 2 1615 307 237 38 146 chr1 135081018 135081079 -62114353 - L1MEa LINE L1 -5176 894 844 2 1615 1268 34 0 0 chr1 135081079 135081226 -62114206 - B1_Mm SINE Alu 0 147 1 2 1615 307 237 38 146 chr1 135081226 135081322 -62114110 - L1MEa LINE L1 -5227 843 754 2 1615 722 216 34 82 chr1 135081495 135081702 -62113730 + B3A SINE B2 2 198 0 2 1615 807 208 20 71 chr1 135081794 135081991 -62113441 + B4A SINE B4 106 292 0 2 1615 203 378 0 0 chr1 135081998 135082109 -62113323 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1615 1299 164 13 18 chr1 135083045 135083061 -62112371 - URR1B DNA MER1_type -2 223 211 2 1615 1064 92 108 11 chr1 135083061 135083237 -62112195 - B2_Mm2 SINE B2 0 195 3 2 1615 1299 164 13 18 chr1 135083237 135083444 -62111988 - URR1B DNA MER1_type -15 210 1 2 1615 451 214 136 0 chr1 135083554 135083657 -62111775 + PB1D10 SINE Alu 1 117 0 2 1615 269 292 24 22 chr1 135083845 135083969 -62111463 + MIRb SINE MIR 51 179 -97 2 1615 446 302 62 8 chr1 135084171 135084301 -62111131 + RSINE1 SINE B4 13 149 -16 2 1615 279 0 0 0 chr1 135084321 135084352 -62111080 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1615 369 0 0 0 chr1 135084352 135084392 -62111040 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1615 234 0 0 0 chr1 135084392 135084417 -62111015 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1615 265 237 40 0 chr1 135085499 135085575 -62109857 - MER112 DNA MER1_type -180 81 3 2 1615 363 91 18 0 chr1 135085770 135085825 -62109607 - ORR1B2 LTR MaLR 0 367 312 2 1615 212 185 19 0 chr1 135085825 135085879 -62109553 + CT-rich Low_complexity Low_complexity 2 56 0 2 1615 935 90 105 0 chr1 135085885 135086018 -62109414 - B1_Mus1 SINE Alu 0 148 2 2 1615 1903 107 80 0 chr1 135086019 135086319 -62109113 - ORR1B2 LTR MaLR -41 326 3 2 1615 687 25 0 0 chr1 135086375 135086456 -62108976 + (TTCTC)n Simple_repeat Simple_repeat 4 84 0 2 1615 526 255 19 0 chr1 135086456 135086562 -62108870 - PB1D9 SINE Alu -10 110 3 2 1615 193 154 0 55 chr1 135087570 135087625 -62107807 + GA-rich Low_complexity Low_complexity 1 52 0 2 1615 243 88 0 0 chr1 135087660 135087694 -62107738 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1615 897 238 30 5 chr1 135087897 135088100 -62107332 - ID_B1 SINE B4 -16 208 1 2 1615 403 260 39 39 chr1 135088100 135088204 -62107228 - MTEa LTR MaLR -275 104 1 2 1615 1195 88 129 0 chr1 135088697 135088713 -62106719 - B2_Mm2 SINE B2 -1 194 179 2 1615 351 0 0 0 chr1 135088713 135088752 -62106680 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 1615 1195 88 129 0 chr1 135088752 135088906 -62106526 - B2_Mm2 SINE B2 -17 178 3 2 1615 198 309 59 0 chr1 135090304 135090372 -62105060 + MIR SINE MIR 10 81 -181 2 1615 1719 202 48 22 chr1 135090375 135090775 -62104657 + MTC LTR MaLR 4 413 -8 2 1615 441 273 64 7 chr1 135090803 135090943 -62104489 + MIR SINE MIR 103 250 -12 2 1615 312 261 0 0 chr1 135091513 135091582 -62103850 + MER5A1 DNA MER1_type 21 89 -77 2 1615 250 265 0 0 chr1 135091671 135091739 -62103693 + G-rich Low_complexity Low_complexity 6 73 0 2 1615 222 164 0 0 chr1 135091767 135091822 -62103610 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 2 1615 258 268 0 0 chr1 135091993 135092049 -62103383 + PB1D10 SINE Alu 10 65 -52 2 1615 256 83 42 0 chr1 135092160 135092208 -62103224 + (CCCCCA)n Simple_repeat Simple_repeat 4 53 0 2 1615 474 211 0 11 chr1 135092220 135092311 -62103121 - B4A SINE B4 -202 90 1 2 1615 363 208 14 14 chr1 135092347 135092420 -62103012 - ID4 SINE ID -7 76 4 2 1615 568 148 48 16 chr1 135093215 135093339 -62102093 + B1_Mur3 SINE Alu 22 149 0 2 1615 235 246 118 7 chr1 135093463 135093554 -62101878 - FAM SINE Alu -84 227 155 2 1615 833 173 70 21 chr1 135093660 135093802 -62101630 + B1_Mur2 SINE Alu 1 149 0 2 1615 541 204 10 0 chr1 135094177 135094275 -62101157 + RSINE1 SINE B4 26 124 -41 2 1615 396 0 0 0 chr1 135094275 135094319 -62101113 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1615 803 71 0 9 chr1 135094350 135094463 -62100969 - B1_Mur2 SINE Alu -1 148 37 2 1615 30 0 0 0 chr1 135094480 135094510 -62100922 + AT_rich Low_complexity Low_complexity 1 30 0 2 1615 260 352 23 0 chr1 135094777 135094865 -62100567 - MLT1H2 LTR MaLR -1 488 399 2 1615 287 180 48 16 chr1 135095067 135095129 -62100303 + ID4_ SINE ID 5 68 -15 2 1615 351 0 0 0 chr1 135095152 135095191 -62100241 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1615 230 291 25 12 chr1 135095192 135095272 -62100160 - MLT1H2 LTR MaLR -364 191 111 2 1615 245 297 22 59 chr1 135095528 135095664 -62099768 + L2a LINE L2 3277 3407 -19 2 1615 379 299 118 19 chr1 135095768 135095979 -62099453 - MIRb SINE MIR -21 247 16 2 1615 542 241 61 14 chr1 135097687 135097834 -62097598 - RSINE1 SINE B4 0 165 12 2 1615 418 194 291 0 chr1 135098421 135098586 -62096846 + L1MA7 LINE L1 6079 6291 0 2 1615 387 205 0 13 chr1 135098599 135098678 -62096754 + RSINE1 SINE B4 9 86 -79 2 1615 465 252 41 58 chr1 135098852 135099038 -62096394 - B3A SINE B2 0 198 15 2 1615 221 235 176 0 chr1 135099276 135099361 -62096071 - ID_B1 SINE B4 -26 198 99 2 1615 931 280 101 48 chr1 135099653 135099818 -62095614 - RLTR12B LTR ERVK -10 518 353 2 1615 2662 80 0 0 chr1 135099818 135100145 -62095287 - ORR1A2 LTR MaLR 0 327 1 2 1615 931 280 101 48 chr1 135100145 135100462 -62094970 - RLTR12B LTR ERVK -176 352 10 2 1615 195 197 32 44 chr1 135100821 135100889 -62094543 - MIRb SINE MIR -158 118 45 2 1615 507 139 198 0 chr1 135102128 135102229 -62093203 + B1_Mm SINE Alu 12 132 -15 2 1615 468 0 0 0 chr1 135102232 135102284 -62093148 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1615 282 29 0 0 chr1 135102335 135102370 -62093062 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1615 1117 68 0 0 chr1 135102374 135102507 -62092925 - B1_Mus1 SINE Alu -15 133 1 2 1615 293 232 29 0 chr1 135102652 135102721 -62092711 - ID_B1 SINE B4 -8 216 146 2 1615 509 231 73 53 chr1 135102819 135102970 -62092462 - RSINE1 SINE B4 -4 161 8 2 1615 228 292 139 0 chr1 135102992 135103064 -62092368 - PB1D10 SINE Alu -35 82 1 2 1615 532 287 141 21 chr1 135103088 135103280 -62092152 - B4A SINE B4 -68 224 10 2 1615 1183 54 0 0 chr1 135103309 135103457 -62091975 - B1_Mus1 SINE Alu 0 148 1 2 1615 1352 105 11 0 chr1 135103459 135103649 -62091783 - B2_Mm1t SINE B2 0 193 2 2 1615 198 0 0 0 chr1 135103914 135103936 -62091496 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2 1615 1332 19 0 0 chr1 135103936 135104098 -62091334 - B2_Mm1t SINE B2 -30 163 2 2 1615 494 349 148 35 chr1 135104100 135104647 -62090785 - L1MC5 LINE L1 -32 7929 7321 2 1615 244 167 18 36 chr1 135104754 135104810 -62090622 - L1MC5 LINE L1 -722 7239 7185 2 1615 311 113 19 0 chr1 135105301 135105354 -62090078 + (AGGGGG)n Simple_repeat Simple_repeat 6 59 0 3 1615 186 133 0 0 chr1 135105389 135105419 -62090013 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1615 1195 68 0 0 chr1 135105421 135105567 -62089865 - B1_Mm SINE Alu -1 146 1 3 1615 706 151 9 9 chr1 135105612 135105719 -62089713 - PB1D9 SINE Alu -9 111 5 3 1615 1485 42 0 82 chr1 135107845 135108053 -62087379 - B2_Mm1a SINE B2 -1 192 2 3 1615 1095 124 38 5 chr1 135108216 135108402 -62087030 - URR1A DNA MER1_type 0 226 35 3 1615 227 360 98 20 chr1 135108604 135108706 -62086726 + MER81 DNA AcHobo 1 110 -4 3 1615 213 222 0 0 chr1 135109199 135109262 -62086170 + T-rich Low_complexity Low_complexity 1 63 0 3 1615 294 316 40 57 chr1 135111486 135111610 -62083822 + MIRb SINE MIR 43 164 -104 3 1615 396 0 0 0 chr1 135113954 135113998 -62081434 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1615 288 0 0 0 chr1 135113998 135114029 -62081403 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1615 330 257 291 6 chr1 135114429 135114601 -62080831 + MIR SINE MIR 1 221 -41 3 1615 446 238 37 20 chr1 135114998 135115142 -62080290 + B3 SINE B2 1 212 -4 3 1615 857 185 14 7 chr1 135115153 135115300 -62080132 + B1_Mur3 SINE Alu 2 149 0 3 1615 454 268 9 9 chr1 135116156 135116269 -62079163 - PB1D10 SINE Alu -2 115 3 3 1615 180 320 20 0 chr1 135117253 135117303 -62078129 - L2b LINE L2 -208 3167 3117 3 1615 2868 59 41 3 chr1 135117642 135118031 -62077401 - L1_Mus4 LINE L1 -70 6566 6163 3 1615 201 74 0 0 chr1 135118920 135118947 -62076485 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1615 461 362 43 10 chr1 135120623 135120681 -62074751 - B4A SINE B4 -8 284 219 3 1615 363 44 0 0 chr1 135120681 135120726 -62074706 + (TTA)n Simple_repeat Simple_repeat 1 45 0 3 1615 461 362 43 10 chr1 135120726 135120876 -62074556 - B4A SINE B4 -74 218 70 3 1615 387 0 0 0 chr1 135120876 135120919 -62074513 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1615 393 22 0 0 chr1 135120919 135120964 -62074468 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1615 299 365 24 0 chr1 135121088 135121214 -62074218 + Cheshire DNA MER1_type 4 132 -2288 3 1615 512 176 35 39 chr1 135121161 135121306 -62074126 - B3 SINE B2 -40 155 1 3 1615 302 206 100 22 chr1 135122158 135122264 -62073168 - MIRb SINE MIR -92 176 53 3 1615 183 42 0 0 chr1 135124803 135124827 -62070605 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 3 1615 323 223 26 9 chr1 135125342 135125455 -62069977 + CT-rich Low_complexity Low_complexity 3 117 0 3 1615 482 304 35 30 chr1 135125455 135125686 -62069746 + Charlie18a DNA MER1_type 100 331 -11 3 1615 585 255 50 0 chr1 135126931 135127072 -62068360 + B1_Mur1 SINE Alu 1 148 -1 3 1615 490 294 64 6 chr1 135127199 135127370 -62068062 - B3A SINE B2 -15 183 3 3 1615 447 285 28 42 chr1 135127389 135127532 -62067900 - ID_B1 SINE B4 -2 222 82 3 1615 282 125 0 0 chr1 135128948 135128996 -62066436 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 1615 607 173 126 0 chr1 135128996 135129123 -62066309 - B1_Mus2 SINE Alu -1 146 4 3 1615 273 312 43 26 chr1 135129134 135129249 -62066183 - MER46C DNA MER2_type -148 190 74 3 1615 374 343 47 42 chr1 135129312 135129525 -62065907 - MIRb SINE MIR -53 215 2 3 1615 1248 54 0 0 chr1 135130179 135130327 -62065105 + B1_Mus1 SINE Alu 1 148 0 3 1615 332 92 298 107 chr1 135131472 135131593 -62063839 - B2_Mm2 SINE B2 -5 190 47 3 1615 1190 141 6 0 chr1 135131621 135131798 -62063634 - B2_Mm1t SINE B2 -14 179 2 3 1615 297 0 0 0 chr1 135132015 135132048 -62063384 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1615 1261 70 116 0 chr1 135132098 135132270 -62063162 - B2_Mm2 SINE B2 -1 194 3 3 1615 1056 230 73 11 chr1 135132369 135132641 -62062791 - Lx8 LINE L1 -359 7114 6826 3 1615 216 240 0 0 chr1 135134150 135134200 -62061232 + G-rich Low_complexity Low_complexity 1 50 0 3 1615 422 237 140 0 chr1 135135079 135135193 -62060239 - B1F SINE Alu -2 147 18 3 1616 582 15 0 0 chr1 135135243 135135310 -62060122 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1616 551 151 83 19 chr1 135135316 135135424 -62060008 - PB1D9 SINE Alu -1 119 5 3 1616 356 385 36 0 chr1 135135605 135135771 -62059661 - MIR SINE MIR -63 199 28 3 1616 370 241 42 63 chr1 135136262 135136404 -62059028 - L1MC4 LINE L1 -215 7827 7689 3 1616 332 264 28 178 chr1 135136534 135136660 -62058772 - MER96B DNA hAT -11 406 298 3 1616 957 231 25 20 chr1 135136660 135136863 -62058569 - B3 SINE B2 -11 205 2 3 1616 332 264 28 178 chr1 135136863 135136989 -62058443 - MER96B DNA hAT -120 297 192 3 1616 1616 132 80 4 chr1 135137040 135137314 -62058118 - Lx LINE L1 -1 6653 6359 3 1616 626 217 18 58 chr1 135138069 135138240 -62057192 - RSINE1 SINE B4 0 165 2 3 1616 267 296 0 27 chr1 135138751 135138824 -62056608 - PB1D10 SINE Alu -1 116 46 3 1616 428 51 17 0 chr1 135138893 135138952 -62056480 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1616 756 301 142 43 chr1 135138958 135139492 -62055940 - L1ME1 LINE L1 -134 6045 5459 3 1616 313 283 211 94 chr1 135139543 135139781 -62055651 - L1ME1 LINE L1 -907 5239 4967 3 1616 955 202 82 5 chr1 135139781 135139975 -62055457 - B3 SINE B2 -6 210 2 3 1616 313 283 211 94 chr1 135139975 135140110 -62055322 - L1ME1 LINE L1 -1180 4966 4823 3 1616 519 17 0 0 chr1 135140172 135140232 -62055200 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1616 326 275 25 0 chr1 135140421 135140501 -62054931 - ID4_ SINE ID 0 83 2 3 1616 488 236 124 59 chr1 135140541 135140694 -62054738 - ID_B1 SINE B4 -48 176 14 3 1616 293 258 44 22 chr1 135140710 135140801 -62054631 - PB1D10 SINE Alu 0 117 25 3 1616 395 304 152 12 chr1 135140818 135141141 -62054291 - L1MD LINE L1 -1462 4684 4317 3 1616 227 203 17 0 chr1 135142055 135142114 -62053318 + GA-rich Low_complexity Low_complexity 1 60 0 3 1616 459 211 0 0 chr1 135143452 135143613 -62051819 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 1616 465 66 0 0 chr1 135144556 135144617 -62050815 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1616 684 138 50 9 chr1 135144928 135145064 -62050368 - B1_Mur1 SINE Alu 0 149 8 3 1616 237 284 46 164 chr1 135144964 135145183 -62050249 - MT2B2 LTR ERVL -320 264 72 3 1616 290 256 56 44 chr1 135145116 135145206 -62050226 - PB1D7 SINE Alu -27 93 3 3 1616 377 261 101 32 chr1 135145393 135145551 -62049881 + MER3 DNA MER1_type 1 169 -40 3 1616 7157 48 3 1 chr1 135145551 135146457 -62048975 - L1_Mus1 LINE L1 -37 6530 5649 3 1616 208 231 219 55 chr1 135146957 135147085 -62048347 - MIRm SINE MIR -32 236 88 3 1616 216 0 49 49 chr1 135149765 135149806 -62045626 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1616 188 264 19 0 chr1 135150915 135150968 -62044464 - MIR3 SINE MIR -51 157 104 3 1616 189 0 0 0 chr1 135151801 135151822 -62043610 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1616 201 315 163 0 chr1 135151951 135152043 -62043389 - L4 LINE RTE -1105 924 818 3 1616 405 0 0 0 chr1 135153919 135153964 -62041468 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1616 306 281 33 33 chr1 135156086 135156178 -62039254 + B4A SINE B4 81 172 -120 3 1616 357 216 14 13 chr1 135156098 135156205 -62039227 + PB1D10 SINE Alu 6 111 -36 3 1616 256 326 48 61 chr1 135156211 135156358 -62039074 + MT2B2 LTR ERVL 119 263 -321 3 1616 712 243 0 14 chr1 135156250 135156396 -62039036 + ID_B1 SINE B4 80 223 -1 3 1616 221 0 35 0 chr1 135156991 135157020 -62038412 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1616 445 305 58 13 chr1 135157021 135157177 -62038255 - MER20 DNA MER1_type -56 163 1 3 1616 600 167 0 0 chr1 135157922 135158042 -62037390 + CT-rich Low_complexity Low_complexity 3 122 0 3 1616 379 254 194 42 chr1 135158042 135158059 -62037373 - B4A SINE B4 -46 246 230 3 1616 1034 128 0 7 chr1 135158059 135158209 -62037223 - B1_Mur3 SINE Alu 0 149 1 3 1616 379 254 194 42 chr1 135158209 135158335 -62037097 - B4A SINE B4 -63 229 81 3 1616 204 40 0 0 chr1 135158357 135158382 -62037050 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1616 465 19 0 0 chr1 135158382 135158435 -62036997 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1616 294 50 0 0 chr1 135158752 135158792 -62036640 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1616 556 293 163 36 chr1 135158978 135159279 -62036153 - ORR1E LTR MaLR -2 357 19 3 1616 374 170 76 48 chr1 135159436 135159466 -62035966 + B1_Mm SINE Alu 40 65 -82 3 1616 228 35 0 0 chr1 135159466 135159495 -62035937 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1616 374 170 76 48 chr1 135159495 135159569 -62035863 + B1_Mm SINE Alu 66 147 0 3 1616 450 304 0 35 chr1 135159973 135160089 -62035343 + RSINE1 SINE B4 39 150 -15 3 1616 438 128 69 11 chr1 135160638 135160725 -62034707 + B1_Mm SINE Alu 35 126 -21 3 1616 495 95 0 0 chr1 135161603 135161677 -62033755 + (GGA)n Simple_repeat Simple_repeat 1 74 0 3 1616 247 284 11 33 chr1 135162439 135162530 -62032902 - MLT1A1 LTR MaLR -29 379 291 3 1616 366 260 19 28 chr1 135162639 135162746 -62032686 + B1_Mur1 SINE Alu 1 106 -43 3 1616 264 337 20 0 chr1 135163027 135163125 -62032307 + (CACG)n Simple_repeat Simple_repeat 4 103 0 3 1616 289 298 0 11 chr1 135167085 135167189 -62028243 + MIRm SINE MIR 39 141 -127 3 1616 1397 225 38 23 chr1 135167512 135167874 -62027558 - MTD LTR MaLR -51 345 5 3 1616 184 264 92 53 chr1 135167892 135167968 -62027464 - L2b LINE L2 -43 3332 3254 3 1616 1381 81 37 16 chr1 135168261 135168450 -62026982 + B2_Mm2 SINE B2 1 193 -2 3 1616 222 37 0 0 chr1 135169306 135169333 -62026099 + (GGGTG)n Simple_repeat Simple_repeat 1 27 0 3 1616 269 337 0 66 chr1 135169408 135169589 -62025843 - YREP_Mm Unknown Unknown -1458 354 186 4 1616 595 266 16 16 chr1 135169449 135169618 -62025814 + ID_B1 SINE B4 76 248 -44 4 1616 261 0 0 0 chr1 135170403 135170432 -62025000 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1616 188 86 0 28 chr1 135172297 135172333 -62023099 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 4 1616 316 243 14 14 chr1 135173231 135173302 -62022130 + B4 SINE B4 80 150 -142 4 1616 560 167 0 64 chr1 135173245 135173354 -62022078 + PB1D9 SINE Alu 9 110 -10 4 1616 252 86 0 0 chr1 135173375 135173410 -62022022 + (TAA)n Simple_repeat Simple_repeat 1 35 0 4 1616 367 307 50 0 chr1 135173465 135173605 -62021827 - MIR SINE MIR -68 194 48 4 1616 1022 208 76 0 chr1 135174723 135174920 -62020512 + B3 SINE B2 1 212 -4 4 1616 209 161 0 0 chr1 135175252 135175283 -62020149 + polypyrimidine Low_complexity Low_complexity 1 31 0 4 1616 1085 115 129 5 chr1 135177738 135177931 -62017501 - URR1A DNA MER1_type -8 218 2 4 1616 946 224 88 63 chr1 135179482 135179801 -62015631 - MTEa LTR MaLR 0 379 53 4 1616 322 240 21 10 chr1 135180094 135180191 -62015241 + GA-rich Low_complexity Low_complexity 1 98 0 4 1616 199 297 67 13 chr1 135180831 135180906 -62014526 + MIR SINE MIR 182 260 -2 4 1616 1175 68 7 0 chr1 135181141 135181287 -62014145 + B1_Mm SINE Alu 1 147 0 4 1616 203 0 0 36 chr1 135181300 135181328 -62014104 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1616 534 273 56 47 chr1 135184652 135184867 -62010565 - MLT1C LTR MaLR -1 466 250 4 1616 404 259 36 0 chr1 135185142 135185254 -62010178 + PB1D10 SINE Alu 1 116 -1 4 1616 1386 85 11 5 chr1 135185260 135185450 -62009982 + B2_Mm1t SINE B2 1 191 -2 4 1616 894 285 29 7 chr1 135185471 135185750 -62009682 + B4A SINE B4 2 286 -6 4 1616 393 242 103 29 chr1 135185832 135185956 -62009476 - MLT1C-int LTR MaLR -140 1231 1115 4 1616 661 297 54 74 chr1 135185992 135186290 -62009142 - B4 SINE B4 0 292 1 4 1616 234 324 0 14 chr1 135186365 135186437 -62008995 - ID4 SINE ID -8 75 5 4 1616 225 293 162 62 chr1 135186547 135186707 -62008725 - MLT1C-int LTR MaLR -462 1027 852 4 1616 241 284 62 0 chr1 135186760 135186841 -62008591 - MLT1C-int LTR MaLR -631 740 655 4 1616 398 332 96 0 chr1 135186910 135187097 -62008335 - MLT1C-int LTR MaLR -903 468 264 4 1616 582 103 0 0 chr1 135187097 135187184 -62008248 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 1616 299 65 0 21 chr1 135187184 135187231 -62008201 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1616 425 285 199 46 chr1 135187238 135187454 -62007978 - B4 SINE B4 -11 281 46 4 1616 617 199 28 7 chr1 135187577 135187719 -62007713 - B1_Mur1 SINE Alu 0 149 5 4 1616 4034 45 0 28 chr1 135187730 135188233 -62007199 - L1Md_F2 LINE L1 -1 6581 6093 4 1616 295 330 94 16 chr1 135188233 135188415 -62007017 - MLT1C-int LTR MaLR -1167 204 8 4 1616 582 335 60 16 chr1 135188430 135188682 -62006750 - MLT1C LTR MaLR -9 458 196 4 1616 243 299 38 38 chr1 135188756 135188836 -62006596 - MLT1C LTR MaLR -383 84 5 4 1616 668 227 86 9 chr1 135189344 135189489 -62005943 + B3A SINE B2 24 172 -23 4 1616 180 0 0 0 chr1 135189489 135189509 -62005923 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1616 311 276 108 90 chr1 135189509 135189530 -62005902 + B2_Mm2 SINE B2 173 193 -2 4 1616 218 256 68 60 chr1 135189727 135189860 -62005572 - MIR SINE MIR -89 173 40 4 1616 602 188 9 26 chr1 135192017 135192132 -62003300 - PB1D10 SINE Alu 0 117 5 4 1616 390 42 0 0 chr1 135193474 135193522 -62001910 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1616 320 242 0 0 chr1 135197782 135197848 -61997584 - L2a LINE L2 -4 3422 3357 4 1616 186 171 0 0 chr1 135199626 135199667 -61995765 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1616 492 204 74 0 chr1 135200552 135200660 -61994772 + PB1D10 SINE Alu 1 116 -1 4 1616 1213 60 6 6 chr1 135200662 135200830 -61994602 + B2_Mm2 SINE B2 3 170 -25 4 1616 304 207 0 0 chr1 135200943 135201001 -61994431 + PB1D10 SINE Alu 11 68 -49 4 1616 1794 171 21 102 chr1 135200997 135201419 -61994013 - ORR1B1 LTR MaLR -6 388 1 4 1616 691 198 119 23 chr1 135201427 135201603 -61993829 + B3 SINE B2 24 216 0 4 1616 357 284 0 84 chr1 135201696 135201815 -61993617 + B3A SINE B2 54 162 -36 4 1616 1204 158 13 43 chr1 135202253 135202414 -61993018 + URR1B DNA MER1_type 1 162 -63 4 1616 3492 39 0 128 chr1 135202414 135202914 -61992518 - RLTR10C LTR ERVK 0 436 1 4 1616 1204 158 13 43 chr1 135202914 135202984 -61992448 + URR1B DNA MER1_type 163 225 0 4 1616 569 197 25 0 chr1 135203024 135203106 -61992326 - URR1A DNA MER1_type -101 125 41 4 1616 513 47 0 0 chr1 135203106 135203170 -61992262 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1616 569 197 25 0 chr1 135203170 135203209 -61992223 - URR1A DNA MER1_type -186 40 2 4 1616 300 137 0 0 chr1 135203337 135203388 -61992044 + (GAAAA)n Simple_repeat Simple_repeat 5 55 0 4 1616 205 270 151 44 chr1 135203932 135204091 -61991341 - MIR SINE MIR -3 259 84 4 1616 324 0 0 0 chr1 135204485 135204521 -61990911 + (TTA)n Simple_repeat Simple_repeat 3 38 0 4 1616 919 153 4 140 chr1 135204661 135204896 -61990536 + URR1A DNA MER1_type 1 203 -23 4 1616 388 248 33 72 chr1 135204894 135205046 -61990386 + B3A SINE B2 53 198 0 4 1616 828 196 7 7 chr1 135205054 135205198 -61990234 + B1F2 SINE Alu 1 144 -5 4 1616 1208 62 0 0 chr1 135205838 135205984 -61989448 + B1_Mus2 SINE Alu 2 147 0 4 1616 739 167 79 7 chr1 135206013 135206152 -61989280 + B1_Mur1 SINE Alu 1 149 0 4 1616 767 321 245 20 chr1 135206951 135207866 -61987566 - L2a LINE L2 -5 3421 2301 4 1616 384 258 76 27 chr1 135207916 135208068 -61987364 - MER20 DNA MER1_type -31 188 35 4 1616 227 175 0 17 chr1 135209058 135209116 -61986316 + G-rich Low_complexity Low_complexity 5 61 0 4 1616 2146 141 31 13 chr1 135209727 135210179 -61985253 + MT2B LTR ERVL 1 601 0 4 1616 253 256 44 11 chr1 135210313 135210404 -61985028 + L1MC4 LINE L1 7484 7577 -465 4 1616 319 284 19 10 chr1 135210684 135210787 -61984645 + PB1 SINE Alu 2 105 -22 4 1616 308 191 177 73 chr1 135211696 135211792 -61983640 + PB1D10 SINE Alu 5 110 -7 4 1616 255 79 0 0 chr1 135211814 135211852 -61983580 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1616 345 24 0 0 chr1 135211866 135211908 -61983524 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 4 1616 384 318 28 0 chr1 135211914 135212021 -61983411 - PB1D9 SINE Alu -8 112 3 4 1616 277 205 159 25 chr1 135212021 135212113 -61983319 - PB1D10 SINE Alu -3 117 12 4 1616 1139 75 0 7 chr1 135212240 135212387 -61983045 - B1_Mus2 SINE Alu 0 147 2 4 1616 191 88 0 29 chr1 135212690 135212725 -61982707 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1616 926 178 7 0 chr1 135212891 135213037 -61982395 - B1_Mur1 SINE Alu -2 147 1 4 1616 368 256 0 11 chr1 135213111 135213198 -61982234 + PB1D10 SINE Alu 20 105 -12 4 1616 288 314 0 46 chr1 135213199 135213289 -61982143 + ID4 SINE ID 1 82 -70 4 1616 506 298 67 81 chr1 135213531 135213626 -61981806 + L1MB3 LINE L1 5389 5490 -681 4 1616 823 245 30 35 chr1 135213626 135213825 -61981607 + B3A SINE B2 1 198 0 4 1616 765 170 178 24 chr1 135213827 135213996 -61981436 - B2_Mm2 SINE B2 0 195 1 4 1616 506 298 67 81 chr1 135213996 135214183 -61981249 + L1MB3 LINE L1 5491 5670 -513 4 1616 270 0 0 0 chr1 135214183 135214213 -61981219 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1616 409 328 82 83 chr1 135214213 135214382 -61981050 + L1MB3 LINE L1 5671 5848 -335 4 1616 865 199 199 0 chr1 135214382 135214558 -61980874 - B3 SINE B2 -5 211 1 4 1616 409 328 82 83 chr1 135214558 135214689 -61980743 + L1MB3 LINE L1 5849 5975 -208 4 1616 415 152 25 0 chr1 135214807 135214886 -61980546 + PB1D10 SINE Alu 36 116 -1 4 1616 342 0 0 0 chr1 135214962 135215000 -61980432 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1616 489 243 170 20 chr1 135215001 135215148 -61980284 - B3 SINE B2 -46 170 2 4 1616 405 0 0 0 chr1 135216658 135216703 -61978729 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1616 204 62 0 59 chr1 135217738 135217772 -61977660 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 4 1616 362 195 148 11 chr1 135218930 135219018 -61976414 - PB1D10 SINE Alu 0 117 18 4 1616 380 225 53 26 chr1 135219063 135219163 -61976269 + B1_Mus1 SINE Alu 2 106 -14 4 1616 194 0 39 0 chr1 135219163 135219189 -61976243 + (CAAAT)n Simple_repeat Simple_repeat 5 31 0 4 1616 379 225 53 26 chr1 135219189 135219202 -61976230 + PB1D9 SINE Alu 107 117 -3 4 1616 356 169 0 13 chr1 135219356 135219434 -61975998 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1616 531 216 34 8 chr1 135219632 135219749 -61975683 - PB1D9 SINE Alu 0 120 1 4 1616 453 309 29 0 chr1 135219749 135219884 -61975548 - B1F SINE Alu -9 140 1 4 1616 396 0 0 0 chr1 135220174 135220218 -61975214 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1616 674 277 25 12 chr1 135221369 135221530 -61973902 - RSINE1 SINE B4 0 165 3 4 1616 630 0 0 0 chr1 135221994 135222064 -61973368 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 4 1616 896 35 0 0 chr1 135222064 135222177 -61973255 - B1_Mus2 SINE Alu -9 138 26 4 1616 1115 42 0 0 chr1 135223346 135223489 -61971943 - B1_Mus1 SINE Alu 0 148 6 4 1616 420 130 222 77 chr1 135224239 135224356 -61971076 + B1_Mur4 SINE Alu 17 150 0 4 1616 214 140 0 39 chr1 135224356 135224388 -61971044 + A-rich Low_complexity Low_complexity 4 34 0 4 1616 315 0 0 0 chr1 135224388 135224423 -61971009 + (CCA)n Simple_repeat Simple_repeat 3 37 0 4 1616 214 140 0 39 chr1 135224423 135224442 -61970990 + A-rich Low_complexity Low_complexity 35 53 0 4 1616 220 295 18 71 chr1 135224459 135224572 -61970860 - MIR3 SINE MIR -35 173 67 4 1616 207 0 0 0 chr1 135225404 135225427 -61970005 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1616 491 270 112 6 chr1 135226453 135226612 -61968820 + B3A SINE B2 1 174 -24 4 1616 342 0 0 0 chr1 135226612 135226650 -61968782 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 4 1616 491 270 112 6 chr1 135226650 135226669 -61968763 + B3A SINE B2 175 198 0 4 1616 1311 82 54 11 chr1 135226676 135226861 -61968571 + B2_Mm1a SINE B2 1 193 0 4 1616 207 0 0 0 chr1 135226870 135226893 -61968539 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1616 788 158 56 21 chr1 135227042 135227184 -61968248 - B1_Mur1 SINE Alu -1 148 2 4 1616 180 0 0 0 chr1 135227587 135227607 -61967825 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 5 1616 2356 136 48 0 chr1 135228649 135229025 -61966407 - ORR1B1 LTR MaLR 0 394 1 5 1616 269 260 179 52 chr1 135229357 135229491 -61965941 - MIRb SINE MIR -22 246 96 5 1616 778 180 0 0 chr1 135230011 135230150 -61965282 + Lx LINE L1 6509 6647 -7 5 1616 21 0 0 0 chr1 135230150 135230171 -61965261 + AT_rich Low_complexity Low_complexity 1 21 0 5 1616 1147 236 164 42 chr1 135230258 135230300 -61965132 - MTEb LTR MaLR 0 379 350 5 1616 1695 16 16 0 chr1 135230300 135230490 -61964942 + B2_Mm1a SINE B2 1 193 0 5 1616 1147 236 164 42 chr1 135230490 135230783 -61964649 - MTEb LTR MaLR -30 349 3 5 1616 680 229 12 44 chr1 135230846 135231006 -61964426 + RSINE1 SINE B4 1 155 -10 5 1616 948 163 89 31 chr1 135231213 135231453 -61963979 + RMER16 LTR ERVK 2 202 -331 5 1616 13332 87 37 3 chr1 135231453 135233390 -61962042 + RMER16-int LTR ERVK 3090 5092 -314 5 1616 1050 77 0 0 chr1 135233397 135233540 -61961892 + B1_Mus1 SINE Alu 6 148 0 5 1616 24 0 0 0 chr1 135233540 135233564 -61961868 + AT_rich Low_complexity Low_complexity 1 24 0 5 1616 1668 66 9 22 chr1 135233573 135233805 -61961627 + RMER16-int LTR ERVK 5075 5303 -103 5 1616 465 149 35 7 chr1 135233862 135233961 -61961471 + RMER16-int LTR ERVK 5330 5406 0 5 1616 1427 162 135 11 chr1 135233961 135234323 -61961109 + RMER16 LTR ERVK 1 533 0 5 1616 7542 96 7 39 chr1 135234323 135235487 -61959945 + RMER16-int LTR ERVK 1 1120 -4286 5 1616 1112 70 14 7 chr1 135235487 135235632 -61959800 + B1_Mus1 SINE Alu 1 146 -2 5 1616 3783 200 44 111 chr1 135235632 135235733 -61959699 + RMER16-int LTR ERVK 971 1041 -5096 5 1616 1594 52 0 10 chr1 135235733 135235928 -61959504 + B2_Mm1a SINE B2 1 193 0 5 1616 3783 87 27 58 chr1 135235928 135236166 -61959266 + RMER16-int LTR ERVK 1042 1424 -3982 5 1616 225 234 31 15 chr1 135236270 135236335 -61959097 + MTC-int LTR MaLR 910 975 -283 5 1616 3375 99 95 11 chr1 135236336 135236896 -61958536 + RMER16-int LTR ERVK 1428 2034 -3372 5 1616 396 83 33 0 chr1 135236895 135236955 -61958477 + RMER16-int LTR ERVK 5345 5406 0 5 1616 2652 158 67 24 chr1 135236955 135237466 -61957966 + RMER16 LTR ERVK 1 533 0 5 1616 182 230 16 47 chr1 135237580 135237644 -61957788 - L2c LINE L2 -287 3100 3039 5 1616 306 0 0 0 chr1 135237966 135238000 -61957432 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1616 537 64 0 0 chr1 135238000 135238077 -61957355 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1616 811 133 0 0 chr1 135238077 135238197 -61957235 - B1_Mus1 SINE Alu -24 124 5 5 1616 423 229 53 44 chr1 135238097 135238211 -61957221 - B4 SINE B4 -98 194 80 5 1616 372 189 116 0 chr1 135238223 135238318 -61957114 - L1MB2 LINE L1 -27 6144 6039 5 1616 504 295 74 66 chr1 135238325 135238568 -61956864 + HAL1 LINE L1 958 1202 -1305 5 1616 629 235 22 0 chr1 135238856 135238992 -61956440 + B1_Mur2 SINE Alu 10 148 -1 5 1616 773 10 0 90 chr1 135239241 135239352 -61956080 + RLTR10C LTR ERVK 1 101 -335 5 1616 310 21 43 0 chr1 135239352 135239399 -61956033 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1616 796 66 0 0 chr1 135239399 135239505 -61955927 - B1_Mus1 SINE Alu -10 138 33 5 1616 2997 43 30 5 chr1 135239504 135239899 -61955533 - RLTR10C LTR ERVK -31 405 1 5 1616 1215 65 99 12 chr1 135239942 135240113 -61955319 - B2_Mm2 SINE B2 -8 187 2 5 1616 405 0 0 0 chr1 135240129 135240174 -61955258 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1616 3881 171 55 7 chr1 135240174 135240306 -61955126 - RMER1A Other Other -11 1019 866 5 1616 204 40 0 0 chr1 135240306 135240331 -61955101 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1616 3881 189 48 17 chr1 135240331 135241021 -61954411 - RMER1A Other Other -165 865 280 5 1616 1126 185 30 0 chr1 135243031 135243231 -61952201 + B3 SINE B2 4 209 -7 5 1616 25 0 0 0 chr1 135243232 135243257 -61952175 + AT_rich Low_complexity Low_complexity 1 25 0 5 1616 486 0 0 0 chr1 135243578 135243632 -61951800 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1616 260 361 29 23 chr1 135244428 135244601 -61950831 + L2 LINE L2 664 837 -2582 5 1616 239 184 20 0 chr1 135244602 135244651 -61950781 + 4.5SRNA scRNA scRNA 1 50 -44 5 1616 841 192 7 0 chr1 135245140 135245286 -61950146 + B1_Mur2 SINE Alu 1 147 -2 5 1616 396 0 0 0 chr1 135245367 135245411 -61950021 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1616 227 259 93 12 chr1 135246696 135246782 -61948650 - RMER17B LTR ERVK 0 958 866 5 1616 974 217 60 97 chr1 135246773 135247175 -61948257 - RMER17B LTR ERVK -363 595 1 5 1616 390 196 11 11 chr1 135247585 135247678 -61947754 - RMER17A-int LTR ERVK -33 1695 1603 5 1616 1969 173 7 83 chr1 135247678 135248112 -61947320 - RMER17A-int LTR ERVK -262 1466 1066 5 1616 728 252 12 62 chr1 135248135 135248393 -61947039 - RMER17A-int LTR ERVK -623 1105 861 5 1616 189 350 49 20 chr1 135248426 135248528 -61946904 + MIRb SINE MIR 112 216 -52 5 1616 654 189 75 15 chr1 135249349 135249483 -61945949 - B1_Mur2 SINE Alu -1 148 7 5 1616 228 238 0 0 chr1 135250431 135250494 -61944938 + (CGGA)n Simple_repeat Simple_repeat 3 65 0 5 1616 960 150 7 13 chr1 135251019 135251168 -61944264 - B1_Mur1 SINE Alu 0 149 2 5 1616 360 0 0 0 chr1 135251934 135251974 -61943458 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1616 294 301 52 17 chr1 135253393 135253508 -61941924 - L2b LINE L2 -35 3340 3222 5 1616 263 122 0 20 chr1 135255442 135255492 -61939940 + (CCTG)n Simple_repeat Simple_repeat 3 51 0 5 1616 338 320 30 46 chr1 135256090 135256221 -61939211 + MER5B DNA MER1_type 32 160 -18 5 1616 209 287 31 31 chr1 135256302 135256399 -61939033 - MIRc SINE MIR -145 123 27 5 1616 360 224 0 26 chr1 135256981 135257059 -61938373 + B4 SINE B4 10 85 -207 5 1616 941 112 13 7 chr1 135257077 135257229 -61938203 + B2_Mm2 SINE B2 2 154 -41 5 1616 315 0 0 0 chr1 135257229 135257264 -61938168 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 5 1616 297 0 0 0 chr1 135257376 135257409 -61938023 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1616 369 0 0 0 chr1 135257409 135257449 -61937983 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1616 210 211 39 0 chr1 135257453 135257505 -61937927 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 5 1616 2094 151 72 8 chr1 135257667 135258041 -61937391 + MTC LTR MaLR 1 398 -23 5 1616 544 98 0 0 chr1 135258442 135258524 -61936908 - MTC LTR MaLR -195 226 145 5 1616 364 275 175 35 chr1 135258932 135259075 -61936357 - MER3 DNA MER1_type 0 209 47 5 1616 279 0 0 0 chr1 135259705 135259736 -61935696 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1616 782 228 0 0 chr1 135262769 135262918 -61932514 - B1_Mur2 SINE Alu 0 149 1 5 1616 617 209 85 0 chr1 135266085 135266214 -61929218 - B1_Mur1 SINE Alu -7 142 3 5 1616 348 206 16 116 chr1 135266108 135266229 -61929203 - MT2B LTR ERVL -338 263 155 5 25 287 235 146 10 chr1 135266273 135266376 -61929056 - L1MA6 LINE L1 -68 6232 6116 5 1617 342 0 0 0 chr1 135266822 135266860 -61928572 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 5 1617 222 371 60 8 chr1 135266881 135266998 -61928434 - L2c LINE L2 -2 3385 3263 5 1617 577 193 57 43 chr1 135267284 135267425 -61928007 - B1F1 SINE Alu 0 149 7 5 1617 329 269 37 28 chr1 135270444 135270551 -61924881 - MER2 DNA MER2_type -145 200 93 5 1617 824 249 16 5 chr1 135270569 135270759 -61924673 - B3 SINE B2 -8 208 17 5 1617 344 282 54 18 chr1 135271446 135271558 -61923874 + PB1D10 SINE Alu 1 116 -1 5 1617 264 333 0 0 chr1 135271560 135271629 -61923803 + ID4 SINE ID 4 72 -11 5 1617 1025 65 19 6 chr1 135271629 135271785 -61923647 + (GAAA)n Simple_repeat Simple_repeat 2 159 0 5 1617 790 196 0 45 chr1 135272099 135272254 -61923178 + B1_Mur2 SINE Alu 2 149 0 5 1617 2050 164 74 3 chr1 135273680 135274059 -61921373 - MTD LTR MaLR -2 417 12 5 1617 996 117 186 55 chr1 135275292 135275407 -61920025 + URR1B DNA MER1_type 1 152 -73 5 1617 635 64 333 9 chr1 135275407 135275518 -61919914 + B1_Mus1 SINE Alu 2 148 0 5 1617 996 117 186 55 chr1 135275518 135275601 -61919831 + URR1B DNA MER1_type 153 225 0 5 1617 411 155 22 77 chr1 135275696 135275787 -61919645 + B1_Mus2 SINE Alu 62 147 0 5 1617 1165 97 96 6 chr1 135277649 135277826 -61917606 - B2_Mm2 SINE B2 0 195 3 5 1617 279 0 0 0 chr1 135277959 135277990 -61917442 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1617 279 0 0 0 chr1 135278252 135278283 -61917149 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1617 245 248 120 28 chr1 135284134 135284242 -61911190 - MIRb SINE MIR -125 143 26 5 1617 1332 98 16 5 chr1 135286206 135286390 -61909042 - B2_Mm2 SINE B2 -8 187 2 5 1617 185 301 139 29 chr1 135287551 135287688 -61907744 + MIRc SINE MIR 11 162 -106 5 1617 370 167 214 0 chr1 135287723 135287807 -61907625 + MTEb LTR MaLR 29 130 -249 5 1617 347 271 172 7 chr1 135287831 135287976 -61907456 + MTEb LTR MaLR 211 379 0 5 1617 387 188 209 73 chr1 135288094 135288244 -61907188 + B3A SINE B2 46 216 0 5 1617 933 197 42 21 chr1 135288273 135288465 -61906967 + B3 SINE B2 1 196 -20 5 1617 489 192 15 9 chr1 135288487 135288592 -61906840 + B1_Mur3 SINE Alu 4 120 0 5 1617 342 0 0 0 chr1 135288832 135288870 -61906562 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1617 369 0 0 0 chr1 135288933 135288974 -61906458 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1617 180 97 0 0 chr1 135289033 135289064 -61906368 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1617 329 219 29 68 chr1 135289155 135289258 -61906174 - B4A SINE B4 -191 101 3 5 1617 687 197 0 8 chr1 135290266 135290399 -61905033 + B1_Mur4 SINE Alu 13 144 -6 5 1617 236 347 0 0 chr1 135290540 135290615 -61904817 - ID4 SINE ID 0 83 9 5 1617 340 239 0 170 chr1 135290815 135290956 -61904476 - B3A SINE B2 0 198 79 5 1617 2024 194 42 66 chr1 135290953 135291471 -61903961 + RLTR20B3 LTR ERVK 72 577 0 5 1617 301 255 100 20 chr1 135291471 135291547 -61903885 - B3A SINE B2 -113 85 2 5 1617 1077 234 5 0 chr1 135291579 135291793 -61903639 - B3 SINE B2 0 216 2 5 1617 384 185 269 0 chr1 135291816 135291924 -61903508 - ID_B1 SINE B4 -2 222 86 5 1617 283 265 12 24 chr1 135292155 135292240 -61903192 + MLT1A1 LTR MaLR 67 150 -258 5 1617 350 290 98 43 chr1 135292529 135292605 -61902827 - Tigger7 DNA MER2_type -1899 592 522 5 1617 1493 63 5 16 chr1 135292605 135292799 -61902633 + B2_Mm2 SINE B2 2 193 -2 5 1617 350 290 98 43 chr1 135292799 135292906 -61902526 - Tigger7 DNA MER2_type -1970 521 399 5 1617 668 216 72 22 chr1 135292893 135293073 -61902359 - B3 SINE B2 -3 213 25 5 1617 713 231 45 161 chr1 135293161 135293258 -61902174 + ID_B1 SINE B4 11 92 -132 5 1617 989 99 28 14 chr1 135293258 135293402 -61902030 + B1_Mus1 SINE Alu 1 146 -2 5 1617 713 231 45 161 chr1 135293402 135293546 -61901886 + ID_B1 SINE B4 93 224 0 5 1617 221 268 62 123 chr1 135293549 135293711 -61901721 + RSINE1 SINE B4 10 161 -4 6 1617 268 243 0 41 chr1 135293730 135293803 -61901629 - Tigger7 DNA MER2_type -2377 114 45 5 1617 230 333 112 29 chr1 135294977 135295005 -61900427 - B2_Mm2 SINE B2 -8 187 150 6 1617 396 0 0 0 chr1 135295005 135295049 -61900383 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1617 345 271 171 52 chr1 135295049 135295190 -61900242 - B3A SINE B2 -48 150 4 6 1617 235 242 97 0 chr1 135295229 135295291 -61900141 - PB1D10 SINE Alu -5 112 45 6 1617 285 247 24 36 chr1 135295325 135295409 -61900023 - ID4_ SINE ID 0 83 1 6 1617 441 0 0 0 chr1 135295412 135295461 -61899971 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 6 1617 186 286 0 0 chr1 135295800 135295849 -61899583 + L2a LINE L2 3348 3396 -30 6 1617 181 255 0 60 chr1 135296250 135296300 -61899132 - MIRm SINE MIR -122 154 108 6 1617 1154 119 28 0 chr1 135297911 135298088 -61897344 + B2_Mm2 SINE B2 4 185 -10 6 1617 857 164 37 9 chr1 135298390 135298569 -61896863 + B3 SINE B2 1 193 0 6 1617 348 83 0 0 chr1 135298570 135298618 -61896814 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1617 648 209 0 0 chr1 135298638 135298753 -61896679 + B1_Mur3 SINE Alu 10 124 -25 6 1617 201 74 0 0 chr1 135298762 135298789 -61896643 + (GGA)n Simple_repeat Simple_repeat 3 29 0 6 1617 290 272 49 0 chr1 135298857 135298938 -61896494 + PB1D10 SINE Alu 33 117 0 6 1617 336 291 87 80 chr1 135299086 135299224 -61896208 + MER21B LTR ERV1 11 149 -714 6 1617 234 0 0 0 chr1 135299472 135299498 -61895934 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1617 306 0 0 0 chr1 135299498 135299531 -61895901 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1617 253 297 13 26 chr1 135299534 135299610 -61895822 - ID4 SINE ID -7 76 2 6 1617 201 206 16 16 chr1 135299617 135299681 -61895751 + T-rich Low_complexity Low_complexity 2 65 0 6 1617 5911 184 142 23 chr1 135299694 135301028 -61894404 - Lx7 LINE L1 0 7696 6204 6 1617 432 0 0 0 chr1 135301028 135301076 -61894356 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1617 5911 184 142 23 chr1 135301076 135301093 -61894339 - Lx7 LINE L1 -1493 6203 6179 6 1617 1030 71 42 21 chr1 135301093 135301237 -61894195 + B1_Mus1 SINE Alu 1 147 -1 6 1617 5911 184 142 23 chr1 135301237 135301333 -61894099 - Lx7 LINE L1 -1518 6178 6076 6 1617 2410 183 25 14 chr1 135301861 135302305 -61893127 - Lx9 LINE L1 -329 7315 6867 6 1617 1089 114 6 18 chr1 135302317 135302474 -61892958 + B2_Mm2 SINE B2 4 160 -35 6 1617 555 120 0 0 chr1 135302474 135302582 -61892850 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 6 1617 1089 114 6 18 chr1 135302582 135302593 -61892839 + B2_Mm2 SINE B2 161 170 -25 6 1617 833 175 54 6 chr1 135302594 135302761 -61892671 - Lx9 LINE L1 -763 6881 6707 6 1617 229 175 0 0 chr1 135303003 135303043 -61892389 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 6 1617 266 371 0 8 chr1 135303302 135303419 -61892013 - MIR SINE MIR 0 262 147 6 1617 483 238 131 24 chr1 135304001 135304322 -61891110 + L1MB3 LINE L1 5592 5975 -208 6 1617 396 284 0 40 chr1 135304470 135304569 -61890863 - PB1D7 SINE Alu 0 120 26 6 1617 320 287 113 0 chr1 135306235 135306350 -61889082 - Charlie12 DNA MER1_type -2726 147 20 6 1617 180 77 0 0 chr1 135307634 135307660 -61887772 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 6 1617 478 242 66 36 chr1 135307908 135308045 -61887387 + ID_B1 SINE B4 77 217 -7 6 1617 269 143 89 0 chr1 135311346 135311402 -61884030 - MIRc SINE MIR -91 177 117 6 1617 1013 72 72 7 chr1 135312771 135312910 -61882522 + B1_Mur3 SINE Alu 2 149 0 6 1617 393 164 59 119 chr1 135313005 135313123 -61882309 + RSINE1 SINE B4 8 118 -47 6 1617 263 309 104 70 chr1 135313442 135313557 -61881875 + MER91B DNA Tip100 12 130 -60 6 1617 251 187 76 61 chr1 135314610 135314717 -61880715 + ID4_ SINE ID 12 114 -38 6 1617 192 97 0 0 chr1 135316463 135316494 -61878938 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1617 255 318 80 40 chr1 135317272 135317552 -61877880 + L2a LINE L2 3042 3335 -40 6 1617 201 147 0 0 chr1 135318179 135318213 -61877219 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 6 1617 247 262 16 0 chr1 135318399 135318460 -61876972 + ID4 SINE ID 3 64 -19 6 1617 791 171 43 0 chr1 135318490 135318630 -61876802 + B1_Mus2 SINE Alu 1 146 -1 6 1617 323 321 63 54 chr1 135318771 135318999 -61876433 - MIR SINE MIR 0 262 39 6 1617 192 77 0 0 chr1 135319701 135319727 -61875705 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1617 34 55 0 0 chr1 135320557 135320612 -61874820 + GC_rich Low_complexity Low_complexity 1 55 0 6 1617 231 145 14 28 chr1 135321029 135321100 -61874332 + GA-rich Low_complexity Low_complexity 3 72 0 6 1617 729 0 0 0 chr1 135321107 135321188 -61874244 + (TCC)n Simple_repeat Simple_repeat 1 81 0 6 1617 486 168 12 7 chr1 135321433 135321530 -61873902 - B1_Mur4 SINE Alu -51 99 5 6 1617 313 200 175 0 chr1 135321534 135321621 -61873811 + B1F SINE Alu 1 101 -19 6 1617 230 354 15 38 chr1 135322244 135322376 -61873056 + L2a LINE L2 3286 3414 -12 6 1617 475 257 9 0 chr1 135322771 135322876 -61872556 + PB1D9 SINE Alu 1 106 -14 6 1617 839 238 48 10 chr1 135323446 135323654 -61871778 - ID_B1 SINE B4 -8 216 1 6 1617 528 190 8 97 chr1 135323764 135323898 -61871534 - RLTR33 LTR ERVK -110 568 447 6 1617 332 200 0 0 chr1 135324055 135324120 -61871312 - RLTR19C LTR ERVK -409 97 33 6 1617 330 251 11 56 chr1 135324269 135324380 -61871052 - PB1D10 SINE Alu -1 116 25 6 1617 306 0 0 0 chr1 135324390 135324424 -61871008 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1617 387 0 0 0 chr1 135324424 135324466 -61870966 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1617 279 0 0 0 chr1 135324474 135324505 -61870927 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1617 3762 123 49 7 chr1 135324529 135325104 -61870328 - MT2B LTR ERVL -2 599 1 6 1617 594 167 0 0 chr1 135325499 135325607 -61869825 + CT-rich Low_complexity Low_complexity 4 111 0 6 1617 656 236 64 0 chr1 135325613 135325753 -61869679 - B1_Mur2 SINE Alu 0 149 1 6 1617 180 0 0 0 chr1 135325951 135325971 -61869461 + (CCCTAA)n Simple_repeat Simple_repeat 1 20 0 6 1617 923 248 47 22 chr1 135325971 135326279 -61869153 - RLTR15 LTR ERVK -42 317 2 6 1617 462 268 106 175 chr1 135326431 135326942 -61868490 - RLTR11A2 LTR ERVK -25 503 13 6 1617 713 241 17 21 chr1 135327106 135327300 -61868132 + B3 SINE B2 1 192 -3 6 1617 348 233 161 30 chr1 135327309 135327477 -61867955 + B2_Mm2 SINE B2 5 194 -1 6 1617 550 252 14 43 chr1 135327571 135327712 -61867720 - B1F SINE Alu 0 149 13 6 1617 499 202 0 0 chr1 135327758 135327847 -61867585 - ID_B1 SINE B4 -2 222 134 6 1617 2637 128 125 25 chr1 135328041 135328522 -61866910 - RLTR24 LTR ERV1 0 529 1 6 1617 230 288 0 0 chr1 135328886 135328945 -61866487 - U6 snRNA snRNA -48 59 1 6 1617 245 169 17 17 chr1 135329016 135329076 -61866356 - ID_B1 SINE B4 -78 146 87 6 1617 322 291 47 54 chr1 135329580 135329729 -61865703 - L1MD LINE L1 -2926 3220 3073 6 1617 1000 66 2 7 chr1 135329741 135329893 -61865539 - B1_Mm SINE Alu 0 149 4 6 1617 412 271 22 149 chr1 135329893 135330045 -61865387 - MT2B2 LTR ERVL -437 147 30 6 1617 272 302 81 40 chr1 135329935 135330059 -61865373 + LTR31 LTR ERV1 473 601 -18 6 1617 342 0 0 0 chr1 135330231 135330269 -61865163 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1617 218 216 20 0 chr1 135330387 135330438 -61864994 + CT-rich Low_complexity Low_complexity 3 54 0 6 1617 904 193 48 53 chr1 135330476 135330684 -61864748 - B3 SINE B2 -7 209 3 6 1617 200 205 0 0 chr1 135331161 135331200 -61864232 + GA-rich Low_complexity Low_complexity 2 40 0 6 1617 297 318 36 0 chr1 135331543 135331653 -61863779 - MER45A DNA Tip100 -2 176 63 6 1617 441 252 20 0 chr1 135331779 135331878 -61863554 - B1F1 SINE Alu -48 101 1 6 1617 237 278 73 47 chr1 135332128 135332226 -61863206 + MLT1A0 LTR MaLR 194 327 -81 6 1617 542 122 1 0 chr1 135332220 135332312 -61863120 - B1_Mus2 SINE Alu -8 141 49 6 1617 270 242 0 0 chr1 135332298 135332360 -61863072 + MLT1A0 LTR MaLR 298 359 -6 6 1617 252 86 0 0 chr1 135332391 135332426 -61863006 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 1617 646 175 175 0 chr1 135332461 135332581 -61862851 - B1_Mus2 SINE Alu -5 142 2 6 1617 604 342 35 42 chr1 135332582 135332866 -61862566 + MLT1B LTR MaLR 82 363 -27 6 1617 418 331 22 0 chr1 135333071 135333207 -61862225 - ID_B1 SINE B4 -1 223 85 6 1617 327 286 227 44 chr1 135333254 135333620 -61861812 - L1M2 LINE L1 -2799 3344 2912 6 1617 221 296 158 12 chr1 135333915 135333997 -61861435 + B1F SINE Alu 2 95 -54 6 1617 500 250 37 45 chr1 135334003 135334137 -61861295 + B1F SINE Alu 16 148 -1 6 1617 305 282 14 0 chr1 135334195 135334266 -61861166 + ID4 SINE ID 12 83 0 6 1617 357 351 62 43 chr1 135334572 135334733 -61860699 + MLT1J LTR MaLR 152 315 -197 6 1617 824 211 0 7 chr1 135335166 135335314 -61860118 - B1_Mur1 SINE Alu -1 148 2 6 1617 203 182 0 22 chr1 135335325 135335370 -61860062 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 6 1617 675 179 65 0 chr1 135335370 135335393 -61860039 - B1_Mur4 SINE Alu 0 150 120 6 1617 306 0 0 0 chr1 135335393 135335427 -61860005 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1617 675 186 64 2 chr1 135335427 135335543 -61859889 - B1_Mur4 SINE Alu -31 119 4 6 1617 290 331 42 114 chr1 135335597 135335652 -61859780 + MLT1F2 LTR MaLR 28 64 -496 6 1617 2186 0 0 0 chr1 135335652 135335890 -61859542 + L1Md_T LINE L1 6345 6582 0 6 1617 290 331 42 114 chr1 135335890 135336001 -61859431 + MLT1F2 LTR MaLR 65 182 -378 6 1617 1052 214 5 5 chr1 135336187 135336394 -61859038 - ID_B1 SINE B4 -16 208 2 6 1617 367 250 72 10 chr1 135336408 135336505 -61858927 - PB1D10 SINE Alu -6 111 9 6 1617 556 255 33 24 chr1 135337039 135337252 -61858180 + L1M5 LINE L1 3133 3347 -2799 6 1617 716 250 170 21 chr1 135337258 135337446 -61857986 + ID_B1 SINE B4 1 216 -8 7 1617 289 359 6 61 chr1 135337331 135337494 -61857938 - YREP_Mm Unknown Unknown -1516 296 143 7 1617 418 257 0 0 chr1 135337503 135337612 -61857820 + L1M5 LINE L1 3370 3478 -2668 6 1617 577 134 167 67 chr1 135337640 135337760 -61857672 + B1F SINE Alu 7 138 -11 7 1617 419 271 138 0 chr1 135337800 135338047 -61857385 + L1MC LINE L1 3546 3826 -2320 7 1617 289 62 20 20 chr1 135338077 135338126 -61857306 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1617 680 259 231 8 chr1 135338169 135338403 -61857029 - B4A SINE B4 -6 286 1 7 1617 369 0 0 0 chr1 135338417 135338458 -61856974 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 7 1617 230 303 31 47 chr1 135338569 135338697 -61856735 + L1M5 LINE L1 4204 4329 -1817 6 1617 274 222 0 160 chr1 135338698 135338773 -61856659 + ID4 SINE ID 1 63 -20 7 1617 258 273 124 0 chr1 135338808 135338929 -61856503 + L1M5 LINE L1 4353 4488 -1658 6 1617 3453 154 203 94 chr1 135338933 135339626 -61855806 + RLTR25B LTR ERVK 1 793 -235 7 1617 1157 78 0 0 chr1 135339626 135339767 -61855665 + B1_Mus2 SINE Alu 5 145 -2 7 1617 3453 154 203 94 chr1 135339767 135339998 -61855434 + RLTR25B LTR ERVK 794 1026 -2 7 1617 405 0 0 0 chr1 135340464 135340509 -61854923 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1617 405 0 0 0 chr1 135340509 135340553 -61854879 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1617 299 298 71 0 chr1 135340563 135340647 -61854785 - B4 SINE B4 -77 215 126 7 1617 414 200 0 0 chr1 135340579 135340654 -61854778 - B1_Mur1 SINE Alu -41 108 34 7 1617 2187 205 69 45 chr1 135340677 135341259 -61854173 - RMER1C Other Other -2 1340 745 7 1617 475 208 22 3 chr1 135341440 135341558 -61853874 - B3A SINE B2 -68 125 2 7 1617 423 283 123 0 chr1 135341617 135341723 -61853709 - B3A SINE B2 -77 121 3 7 1617 1068 206 5 37 chr1 135341760 135341977 -61853455 + B3 SINE B2 3 212 -4 7 1617 368 279 80 20 chr1 135341981 135342131 -61853301 + L1M5 LINE L1 4544 4702 -1444 6 1617 186 143 0 0 chr1 135342250 135342285 -61853147 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1617 342 309 171 0 chr1 135342301 135342424 -61853008 - ID_B1 SINE B4 -8 216 73 7 1617 427 271 0 85 chr1 135342496 135342625 -61852807 + ID_B1 SINE B4 85 202 -22 7 1617 315 85 0 0 chr1 135342715 135342762 -61852670 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1617 252 250 136 61 chr1 135343278 135343297 -61852135 + MT2B LTR ERVL 129 158 -443 7 1617 367 270 35 26 chr1 135343297 135343411 -61852021 + PB1D10 SINE Alu 1 115 -2 7 1617 252 250 136 61 chr1 135343411 135343523 -61851909 + MT2B LTR ERVL 159 270 -331 7 1617 447 262 50 100 chr1 135343421 135343561 -61851871 + B1_Mur1 SINE Alu 7 139 -10 7 1617 1136 112 0 11 chr1 135343561 135343742 -61851690 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 1617 450 186 25 17 chr1 135343865 135343985 -61851447 + GA-rich Low_complexity Low_complexity 1 121 0 7 1617 373 109 77 15 chr1 135344186 135344251 -61851181 - HAL1-3A_ME LINE L1 -824 2034 1966 7 1617 207 186 0 0 chr1 135344251 135344294 -61851138 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1617 1038 142 81 16 chr1 135344363 135344549 -61850883 + URR1B DNA MER1_type 7 204 -21 7 1617 1171 75 0 0 chr1 135344549 135344696 -61850736 + B1_Mus1 SINE Alu 2 148 0 7 1617 201 146 0 0 chr1 135344696 135344744 -61850688 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1617 186 353 29 0 chr1 135345476 135345544 -61849888 + MIR SINE MIR 66 135 -73 7 1617 204 40 0 0 chr1 135345644 135345669 -61849763 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1617 218 296 0 0 chr1 135346551 135346605 -61848827 + (TATG)n Simple_repeat Simple_repeat 2 55 0 7 1617 540 304 23 0 chr1 135346610 135346955 -61848477 + (TG)n Simple_repeat Simple_repeat 1 353 0 7 1617 922 252 80 22 chr1 135347008 135347284 -61848148 - B4A SINE B4 0 292 1 7 1617 1180 75 0 0 chr1 135347327 135347474 -61847958 + B1_Mus1 SINE Alu 2 148 0 7 1617 189 94 0 0 chr1 135347474 135347506 -61847926 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1617 397 269 68 15 chr1 135347828 135347960 -61847472 + MIRc SINE MIR 15 153 -115 7 1617 368 311 88 88 chr1 135348287 135348572 -61846860 - B4A SINE B4 0 292 8 7 1617 1201 166 242 57 chr1 135350194 135350545 -61844887 + MTC LTR MaLR 2 417 -4 7 1617 322 248 0 153 chr1 135350668 135350756 -61844676 - B1F1 SINE Alu 0 149 69 7 1617 822 204 0 7 chr1 135350756 135350904 -61844528 - B1_Mus2 SINE Alu 0 147 1 7 1617 322 248 0 153 chr1 135350904 135350991 -61844441 - B1F1 SINE Alu -81 68 1 7 1617 232 143 0 0 chr1 135351042 135351077 -61844355 + U2 snRNA snRNA 1 35 -153 7 1617 694 277 37 11 chr1 135351121 135351311 -61844121 - B3A SINE B2 0 198 4 7 1617 255 31 0 0 chr1 135352242 135352274 -61843158 + (TTG)n Simple_repeat Simple_repeat 1 32 0 7 1617 501 267 21 64 chr1 135352275 135352415 -61843017 - B1F SINE Alu -9 140 7 7 1617 747 33 0 0 chr1 135352443 135352533 -61842899 + (TTC)n Simple_repeat Simple_repeat 2 91 0 7 1617 748 314 145 14 chr1 135352546 135352960 -61842472 - Lx8 LINE L1 -35 7438 6971 7 1617 7788 52 67 2 chr1 135353029 135354577 -61840855 - L1Md_F3 LINE L1 -14 6570 4872 7 1617 1266 284 46 10 chr1 135354592 135354983 -61840449 - Lx8 LINE L1 -618 6855 6451 7 1617 2140 100 50 22 chr1 135354989 135355166 -61840266 - ORR1A3 LTR MaLR 0 326 154 7 1617 5414 117 119 2 chr1 135355166 135356024 -61839408 + RMER17B LTR ERVK 1 958 0 7 1617 2140 100 50 22 chr1 135356024 135356163 -61839269 - ORR1A3 LTR MaLR -173 153 1 7 1617 891 206 87 47 chr1 135356171 135356471 -61838961 - Lx8 LINE L1 -1032 6441 6130 7 1617 950 190 6 22 chr1 135357045 135357221 -61838211 + ORR1D1 LTR MaLR 10 182 -192 7 1617 921 170 213 16 chr1 135357221 135357533 -61837899 - RMER6B LTR ERVK 0 461 1 7 1617 792 205 81 0 chr1 135357540 135357701 -61837731 + ORR1D1 LTR MaLR 200 373 -1 7 1617 229 277 72 0 chr1 135357976 135358059 -61837373 - MLT1H LTR MaLR -10 539 451 7 1617 2256 141 14 6 chr1 135358157 135358513 -61836919 - ORR1B2 LTR MaLR -8 359 1 7 1617 289 366 75 69 chr1 135358662 135358967 -61836465 + ORR1D2 LTR MaLR 20 326 -44 7 1617 525 253 74 55 chr1 135358998 135359142 -61836290 - MLT1H-int LTR MaLR -32 1457 1311 7 1617 1486 274 17 33 chr1 135359142 135359504 -61835928 - MTE2a LTR MaLR 0 379 24 7 1617 519 17 0 0 chr1 135359508 135359568 -61835864 + (CCA)n Simple_repeat Simple_repeat 2 61 0 7 1617 387 0 0 0 chr1 135359568 135359611 -61835821 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1617 486 0 0 0 chr1 135359611 135359665 -61835767 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1617 272 186 353 26 chr1 135359685 135359801 -61835631 - MLT1H-int LTR MaLR -222 1267 1114 7 1617 561 253 113 0 chr1 135359812 135359962 -61835470 - MLT1H-int LTR MaLR -419 1070 904 7 1617 257 294 0 29 chr1 135360099 135360169 -61835263 + MLT1D LTR MaLR 5 72 -433 7 1617 590 347 78 29 chr1 135360187 135360531 -61834901 + MLT1D LTR MaLR 109 469 -36 7 1617 573 231 0 9 chr1 135360540 135360649 -61834783 + PB1D10 SINE Alu 9 116 -1 7 1617 281 330 11 33 chr1 135360903 135361114 -61834318 + G-rich Low_complexity Low_complexity 1 206 0 7 1617 1193 57 0 0 chr1 135362210 135362351 -61833081 + B1_Mus1 SINE Alu 3 143 -5 7 1617 433 298 6 96 chr1 135363700 135363878 -61831554 - RSINE1 SINE B4 -1 164 3 7 1617 285 252 153 36 chr1 135363881 135363992 -61831440 - ID_B1 SINE B4 -98 126 3 7 1617 305 246 92 72 chr1 135364308 135364461 -61830971 + L1MDa LINE L1 2441 2596 -4037 7 1617 236 256 23 23 chr1 135365692 135365780 -61829652 + (ATAAG)n Simple_repeat Simple_repeat 1 88 0 7 1617 274 305 198 26 chr1 135366121 135366313 -61829119 + MER46C DNA MER2_type 2 226 -112 7 1617 420 20 0 0 chr1 135366319 135366368 -61829064 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1617 303 294 38 38 chr1 135366431 135366537 -61828895 + L1M5 LINE L1 5737 5842 -398 7 1617 513 315 120 15 chr1 135367854 135368128 -61827304 - MLT1D LTR MaLR -9 496 194 7 1617 251 286 22 56 chr1 135368161 135368250 -61827182 - MLT1D LTR MaLR -522 105 20 7 1617 285 376 117 20 chr1 135368269 135368516 -61826916 - L2 LINE L2 -686 2733 2463 7 1617 399 263 136 0 chr1 135368668 135368786 -61826646 + MER58A DNA MER1_type 1 134 -90 7 1617 1443 68 26 10 chr1 135368819 135369011 -61826421 + B2_Mm2 SINE B2 1 195 0 7 1617 295 282 0 0 chr1 135369063 135369134 -61826298 + ID4_ SINE ID 2 72 -11 7 1617 225 0 0 0 chr1 135369136 135369161 -61826271 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1617 333 0 0 0 chr1 135369161 135369198 -61826234 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1617 426 96 0 0 chr1 135369198 135369271 -61826161 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1617 189 225 71 59 chr1 135369481 135369566 -61825866 - L3 LINE CR1 -2314 2175 2090 7 1617 450 218 203 36 chr1 135369615 135369640 -61825792 + ID_B1 SINE B4 64 224 0 7 1617 613 187 18 9 chr1 135369640 135369753 -61825679 + PB1D9 SINE Alu 6 119 -1 7 1617 250 307 0 74 chr1 135369763 135369844 -61825588 + MLT1F2 LTR MaLR 61 135 -425 7 1617 671 182 94 7 chr1 135370356 135370494 -61824938 - B1_Mur4 SINE Alu 0 150 1 7 1617 233 323 53 45 chr1 135370744 135370877 -61824555 + MER105 DNA DNA 19 152 -52 7 1617 2127 106 61 100 chr1 135371044 135371454 -61823978 - ORR1B1 LTR MaLR 0 394 1 7 1617 386 235 143 0 chr1 135371471 135371569 -61823863 - PB1D9 SINE Alu 0 120 9 7 1617 207 0 0 0 chr1 135371779 135371802 -61823630 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1617 23 33 0 0 chr1 135371887 135371917 -61823515 + AT_rich Low_complexity Low_complexity 1 30 0 7 1617 279 354 0 0 chr1 135371933 135372012 -61823420 - ID4_ SINE ID -4 79 1 7 1617 439 327 9 0 chr1 135372140 135372253 -61823179 + B1_Mur1 SINE Alu 7 120 -29 7 1617 507 201 14 7 chr1 135372255 135372400 -61823032 + (CA)n Simple_repeat Simple_repeat 1 146 0 7 1617 2493 141 29 111 chr1 135372549 135373035 -61822397 + RLTR41 LTR ERV1 1 446 0 7 1617 384 299 67 83 chr1 135373400 135373425 -61822007 - B2_Mm2 SINE B2 -5 190 167 7 1617 240 35 0 0 chr1 135373425 135373454 -61821978 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1617 775 232 44 8 chr1 135373454 135373621 -61821811 - B3A SINE B2 -30 168 1 7 1617 864 146 418 68 chr1 135373697 135373977 -61821455 - ORR1C1 LTR MaLR 0 378 1 7 1617 253 292 15 0 chr1 135374178 135374243 -61821189 - ID2 SINE ID -16 67 2 7 1617 417 285 159 50 chr1 135374252 135374454 -61820978 + MLT1D LTR MaLR 328 662 -18 7 1617 287 300 76 25 chr1 135374814 135374944 -61820488 + MLT1G1 LTR MaLR 58 169 -386 8 1617 667 245 104 60 chr1 135375102 135375371 -61820061 + B4A SINE B4 1 281 -11 8 1617 258 32 0 0 chr1 135375387 135375418 -61820014 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1617 690 163 0 0 chr1 135375422 135375533 -61819899 + GA-rich Low_complexity Low_complexity 4 114 0 8 1617 285 51 0 0 chr1 135375533 135375572 -61819860 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1617 690 163 0 0 chr1 135375572 135375589 -61819843 + polypurine Low_complexity Low_complexity 115 131 0 8 1617 599 303 23 9 chr1 135375681 135375857 -61819575 + ID_B1 SINE B4 70 248 -44 8 1617 292 265 0 56 chr1 135376321 135376393 -61819039 + PB1D10 SINE Alu 21 88 -29 8 1617 363 89 0 0 chr1 135377270 135377326 -61818106 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1617 3448 30 5 0 chr1 135377332 135377726 -61817706 - MTA_Mm LTR MaLR 0 396 1 8 1617 270 279 71 18 chr1 135377727 135377840 -61817592 - RSINE1 SINE B4 -4 161 43 8 1617 194 358 38 75 chr1 135377841 135378001 -61817431 + L2a LINE L2 2252 2405 -1014 8 1617 243 61 0 0 chr1 135378502 135378535 -61816897 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1617 278 232 0 0 chr1 135378550 135378606 -61816826 + L2a LINE L2 2413 2468 -951 8 1617 570 301 46 5 chr1 135378849 135379043 -61816389 + L2a LINE L2 3219 3420 -6 8 1617 416 300 9 18 chr1 135379291 135379403 -61816029 + PB1D10 SINE Alu 1 111 -6 8 1617 206 156 22 0 chr1 135379404 135379449 -61815983 + GA-rich Low_complexity Low_complexity 4 49 0 8 1617 390 172 37 17 chr1 135379462 135379555 -61815877 - MTD LTR MaLR -14 405 295 8 1617 407 325 47 18 chr1 135379624 135379793 -61815639 - Tigger9b DNA MER2_type -446 178 5 8 1617 465 176 21 21 chr1 135379935 135380028 -61815404 - L1MC1 LINE L1 0 6333 6241 8 1617 189 0 0 0 chr1 135380152 135380173 -61815259 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1617 808 214 29 82 chr1 135380176 135380223 -61815209 - L1MC1 LINE L1 -464 5869 5828 8 1617 1124 89 130 0 chr1 135380223 135380392 -61815040 - B2_Mm2 SINE B2 -3 192 2 8 1617 808 219 28 87 chr1 135380392 135380647 -61814785 - L1MC1 LINE L1 -1958 5827 5599 8 1617 922 163 0 7 chr1 135380647 135380789 -61814643 + B1_Mus1 SINE Alu 1 141 -7 8 1617 802 268 22 140 chr1 135380789 135380992 -61814440 - L1MC1 LINE L1 -2187 5598 5423 8 1617 288 287 0 0 chr1 135381122 135381251 -61814181 + (TG)n Simple_repeat Simple_repeat 1 129 0 8 1617 464 262 37 73 chr1 135381309 135381445 -61813987 - RSINE1 SINE B4 -9 156 26 8 1617 632 289 42 147 chr1 135381452 135381764 -61813668 - B4 SINE B4 -13 279 1 8 1617 248 218 36 0 chr1 135381797 135381852 -61813580 + ID4_ SINE ID 5 61 -22 8 1617 853 139 41 14 chr1 135381857 135382003 -61813429 - B1_Mur4 SINE Alu 0 150 1 8 1617 543 337 74 17 chr1 135382212 135382511 -61812921 + MLT1A0 LTR MaLR 43 358 -7 8 1617 21 0 0 0 chr1 135382993 135383014 -61812418 + GC_rich Low_complexity Low_complexity 1 21 0 8 1617 368 264 0 0 chr1 135383424 135383496 -61811936 - ID SINE ID -147 77 6 8 1617 1060 205 19 23 chr1 135383524 135383739 -61811693 - B3 SINE B2 -1 215 2 8 1617 533 290 186 28 chr1 135383989 135384312 -61811120 - MLT1A LTR MaLR 0 374 1 8 1617 291 360 10 0 chr1 135384322 135384422 -61811010 - MLT1A-int LTR MaLR -22 1713 1613 8 1617 593 257 57 6 chr1 135385162 135385338 -61810094 - B3 SINE B2 -5 211 27 8 1617 216 0 0 0 chr1 135385338 135385362 -61810070 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1617 817 48 0 0 chr1 135385362 135385465 -61809967 - B1_Mus2 SINE Alu 0 147 45 8 1617 749 73 9 0 chr1 135385511 135385620 -61809812 + (TCC)n Simple_repeat Simple_repeat 3 112 0 8 1617 551 316 54 54 chr1 135385620 135385828 -61809604 - ID_B1 SINE B4 0 224 21 8 1617 373 247 39 0 chr1 135385828 135385905 -61809527 - PB1D10 SINE Alu -26 91 12 8 1617 261 245 86 67 chr1 135385836 135385941 -61809491 - MT2B LTR ERVL -360 241 135 8 1617 551 316 54 54 chr1 135385905 135385922 -61809510 - ID SINE ID 0 20 3 8 1617 796 204 0 14 chr1 135385936 135386062 -61809370 + B1_Mur2 SINE Alu 13 138 -11 8 1617 311 0 0 25 chr1 135386062 135386102 -61809330 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1617 796 204 0 14 chr1 135386102 135386114 -61809318 + B1_Mur2 SINE Alu 139 149 0 8 1617 768 189 14 42 chr1 135386132 135386276 -61809156 + B1_Mur4 SINE Alu 11 150 0 8 1617 1394 90 32 0 chr1 135386277 135386466 -61808966 + B2_Mm2 SINE B2 1 195 0 8 1617 360 200 0 0 chr1 135386466 135386541 -61808891 + GA-rich Low_complexity Low_complexity 4 78 0 8 1617 490 292 113 86 chr1 135386630 135387204 -61808228 - MLT2B4 LTR ERVL -18 538 4 8 1617 1097 88 0 39 chr1 135387204 135387357 -61808075 + B1_Mus2 SINE Alu 1 147 0 8 1617 216 0 0 0 chr1 135387370 135387394 -61808038 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1617 441 36 0 0 chr1 135387476 135387531 -61807901 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1617 354 330 10 0 chr1 135387624 135387727 -61807705 + PB1D10 SINE Alu 3 106 -11 8 1617 667 176 120 15 chr1 135388048 135388181 -61807251 - B1_Mur2 SINE Alu 0 147 1 8 1617 252 0 0 0 chr1 135388897 135388925 -61806507 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1617 818 244 64 5 chr1 135391091 135391293 -61804139 + ID_B1 SINE B4 2 215 -9 8 1617 349 319 20 59 chr1 135391317 135391352 -61804080 + B1_Mur1 SINE Alu 3 38 -111 8 1617 495 0 0 0 chr1 135391352 135391407 -61804025 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1617 397 269 17 77 chr1 135391407 135391524 -61803908 + B1F SINE Alu 40 149 0 8 1617 695 105 18 0 chr1 135391796 135391910 -61803522 + (TTTC)n Simple_repeat Simple_repeat 4 119 0 8 1617 823 171 13 27 chr1 135391910 135392060 -61803372 - B1_Mur3 SINE Alu 0 149 2 8 1617 2158 119 9 56 chr1 135392375 135392803 -61802629 - RMER17C LTR ERVK -2 408 1 8 1617 793 184 77 21 chr1 135392807 135393001 -61802431 - MTEa LTR MaLR -1 378 174 8 1617 1104 142 6 0 chr1 135392987 135393156 -61802276 + ORR1C1 LTR MaLR 209 378 0 8 1617 1172 88 0 0 chr1 135393555 135393702 -61801730 + B1_Mus1 SINE Alu 2 148 0 8 1617 963 260 20 69 chr1 135393982 135394196 -61801236 + B4 SINE B4 2 215 -77 8 1617 180 0 0 0 chr1 135394196 135394216 -61801216 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 8 1617 845 126 0 0 chr1 135394218 135394337 -61801095 + PB1D9 SINE Alu 2 120 0 8 1617 963 260 20 69 chr1 135394337 135394425 -61801007 + B4 SINE B4 216 292 0 8 1617 302 264 0 14 chr1 135394462 135394535 -61800897 + ID4_ SINE ID 2 73 -10 8 1617 513 0 0 0 chr1 135394538 135394595 -61800837 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 8 1617 447 310 8 8 chr1 135395292 135395409 -61800023 - B1_Mur1 SINE Alu -28 121 5 8 1617 222 322 21 53 chr1 135395325 135395420 -61800012 - B4A SINE B4 -119 173 82 8 1617 660 312 12 0 chr1 135395460 135395620 -61799812 - RSINE1 SINE B4 0 165 4 8 1617 400 264 69 0 chr1 135395651 135395738 -61799694 + B1F SINE Alu 1 93 -56 8 1617 360 216 26 199 chr1 135395754 135395910 -61799522 + RMER15 LTR ERVL 1 129 -446 8 1617 767 299 33 37 chr1 135395973 135396244 -61799188 + RMER15 LTR ERVL 292 561 -14 8 1617 400 197 14 0 chr1 135396607 135396678 -61798754 + ID4_ SINE ID 2 73 -10 8 1617 222 237 77 26 chr1 135396742 135396820 -61798612 + L2 LINE L2 1461 1542 -1877 8 1617 498 228 143 24 chr1 135396825 135396951 -61798481 - ID_B1 SINE B4 0 224 84 8 1618 195 42 0 0 chr1 135397427 135397451 -61797981 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1618 212 0 36 0 chr1 135397970 135397998 -61797434 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 8 1618 943 141 0 26 chr1 135397998 135398151 -61797281 - B1_Mur4 SINE Alu 0 150 2 8 1618 426 239 25 0 chr1 135398207 135398311 -61797121 - B3 SINE B2 -87 111 2 8 1618 382 244 190 15 chr1 135398355 135398492 -61796940 - RSINE1 SINE B4 -2 163 3 8 1618 1138 156 99 14 chr1 135398612 135398833 -61796599 - MTD LTR MaLR 0 419 180 8 1618 578 230 18 0 chr1 135399418 135399531 -61795901 - PB1D9 SINE Alu -2 118 4 8 1618 1093 111 58 0 chr1 135399556 135399727 -61795705 + B2_Mm2 SINE B2 6 186 -9 8 1618 234 0 0 0 chr1 135399738 135399764 -61795668 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1618 51 70 0 0 chr1 135399767 135399867 -61795565 + AT_rich Low_complexity Low_complexity 1 100 0 8 1618 2444 145 49 12 chr1 135399872 135400277 -61795155 - MTC LTR MaLR 0 421 2 8 1618 913 259 86 36 chr1 135400364 135400668 -61794764 - Lx8 LINE L1 -339 7134 6816 8 1618 449 258 0 0 chr1 135400683 135400776 -61794656 - Lx8 LINE L1 -740 6733 6641 8 1618 391 257 133 59 chr1 135400781 135401150 -61794282 + RMER10A LTR ERVL 13 430 -12 8 1618 602 284 75 37 chr1 135401217 135401479 -61793953 + RLTR15 LTR ERVK 2 249 -279 8 1618 342 67 0 0 chr1 135401479 135401524 -61793908 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1618 602 286 32 28 chr1 135401524 135401720 -61793712 + RLTR15 LTR ERVK 136 332 -27 8 1618 229 232 70 28 chr1 135401847 135401918 -61793514 - B1F SINE Alu -6 143 70 8 1618 227 301 12 24 chr1 135402444 135402529 -61792903 - PB1 SINE Alu -3 124 41 8 1618 218 294 94 0 chr1 135402756 135402841 -61792591 + L2a LINE L2 2351 2443 -976 8 1618 649 272 67 19 chr1 135402907 135403117 -61792315 - ID_B1 SINE B4 -4 220 1 8 1618 2112 113 68 9 chr1 135403140 135403479 -61791953 - ORR1B2 LTR MaLR -8 359 1 8 1618 915 173 0 6 chr1 135403491 135403648 -61791784 - B3 SINE B2 -60 156 1 8 1618 367 269 9 46 chr1 135403657 135403766 -61791666 - PB1D10 SINE Alu -5 112 8 8 1618 1192 54 0 13 chr1 135403988 135404137 -61791295 - B1_Mus1 SINE Alu 0 148 2 8 1618 1228 187 0 18 chr1 135404196 135404414 -61791018 + B3 SINE B2 1 214 -2 8 1618 324 345 136 0 chr1 135404442 135404694 -61790738 + L2a LINE L2 2858 3143 -283 8 1618 574 242 8 23 chr1 135405099 135405230 -61790202 + ID_B1 SINE B4 2 130 -94 8 1618 715 196 14 0 chr1 135405405 135405543 -61789889 + B1_Mur3 SINE Alu 1 140 -9 8 1618 236 28 56 0 chr1 135405543 135405579 -61789853 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 8 1618 730 175 0 16 chr1 135406259 135406381 -61789051 - B1_Mur4 SINE Alu -4 146 27 8 1618 859 69 23 8 chr1 135406458 135406589 -61788843 + (TTTTC)n Simple_repeat Simple_repeat 2 134 0 9 1618 817 244 71 15 chr1 135406599 135406617 -61788815 - B3 SINE B2 -9 207 185 9 1618 2166 120 34 12 chr1 135406617 135406937 -61788495 - ORR1A2 LTR MaLR 0 327 1 9 1618 817 244 71 15 chr1 135406937 135407114 -61788318 - B3 SINE B2 -32 184 1 9 1618 424 270 116 59 chr1 135407466 135407528 -61787904 + L1_Mur3 LINE L1 968 1025 -6703 9 1618 1430 211 123 68 chr1 135407528 135407607 -61787825 + MTD LTR MaLR 1 78 -341 9 1618 1491 73 5 0 chr1 135407607 135407798 -61787634 + B2_Mm1a SINE B2 2 193 0 9 1618 1430 211 123 68 chr1 135407798 135408115 -61787317 + MTD LTR MaLR 79 419 0 9 1618 424 270 116 59 chr1 135408115 135408336 -61787096 + L1_Mur3 LINE L1 1026 1266 -6462 9 1618 228 35 0 0 chr1 135408336 135408365 -61787067 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1618 424 238 108 37 chr1 135408365 135408516 -61786916 + L1_Mur3 LINE L1 1267 1443 -4404 9 1618 229 213 148 0 chr1 135408525 135408586 -61786846 + RSINE1 SINE B4 2 71 -94 9 1618 1102 257 78 59 chr1 135408673 135409111 -61786321 + L1_Mur3 LINE L1 1481 1926 -3921 9 1618 1856 281 96 65 chr1 135409713 135410907 -61784525 + L1_Mur3 LINE L1 2038 3276 -2604 9 1618 517 167 127 15 chr1 135410907 135411041 -61784391 + B1_Mur1 SINE Alu 1 149 0 9 1618 1856 294 118 56 chr1 135411041 135411322 -61784110 + L1_Mur3 LINE L1 3277 3668 -2475 9 1618 1712 166 10 17 chr1 135411322 135411611 -61783821 - ORR1C1 LTR MaLR 0 378 92 9 1618 684 177 0 60 chr1 135411623 135411773 -61783659 - B1_Mur4 SINE Alu -1 149 9 9 1618 694 131 0 18 chr1 135411771 135411880 -61783552 - ORR1C1 LTR MaLR -271 107 1 9 1618 885 244 13 9 chr1 135411918 135412150 -61783282 + L1_Mur3 LINE L1 3697 3929 -1951 9 1618 750 233 131 133 chr1 135412351 135412816 -61782616 - RMER4A LTR ERVK -2 464 1 9 1618 1120 274 91 56 chr1 135412817 135413251 -61782181 + L1_Mur3 LINE L1 4082 4524 -1356 9 1618 420 20 0 0 chr1 135413251 135413300 -61782132 + (CCA)n Simple_repeat Simple_repeat 1 49 0 9 1618 1120 274 91 56 chr1 135413300 135413506 -61781926 + L1_Mur3 LINE L1 4525 4744 -1136 9 1618 207 0 0 0 chr1 135413510 135413533 -61781899 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1618 986 210 9 32 chr1 135413705 135413922 -61781510 - B3 SINE B2 -4 212 1 9 1618 366 304 148 6 chr1 135414370 135414552 -61780880 + L1M2 LINE L1 4763 4970 -1173 9 1618 1852 216 45 48 chr1 135414552 135414620 -61780812 - MTD LTR MaLR -1 418 348 9 1618 888 142 231 16 chr1 135414620 135414806 -61780626 - URR1A DNA MER1_type 0 226 1 9 1618 1852 216 45 48 chr1 135414806 135415156 -61780276 - MTD LTR MaLR -72 347 1 9 1618 355 182 68 0 chr1 135415160 135415248 -61780184 + L1M2 LINE L1 4965 5058 -1082 9 1618 1034 191 56 0 chr1 135415251 135415429 -61780003 + B3 SINE B2 2 189 -27 9 1618 963 294 57 16 chr1 135415476 135415971 -61779461 + L1_Mur3 LINE L1 5049 5563 -317 9 1618 214 162 0 0 chr1 135416158 135416195 -61779237 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 9 1618 466 222 19 167 chr1 135416313 135416475 -61778957 + RSINE1 SINE B4 28 165 0 9 1618 931 256 85 12 chr1 135416492 135416856 -61778576 + L1MA4 LINE L1 5550 5906 -250 9 1618 262 67 44 0 chr1 135416878 135416923 -61778509 + (CATA)n Simple_repeat Simple_repeat 1 47 0 9 1618 621 189 9 0 chr1 135417071 135417177 -61778255 + B3A SINE B2 1 107 -91 9 1618 223 282 28 0 chr1 135417782 135417853 -61777579 + G-rich Low_complexity Low_complexity 5 77 0 9 1618 687 206 52 0 chr1 135418240 135418376 -61777056 + ID_B1 SINE B4 82 224 0 9 1618 540 259 101 34 chr1 135418403 135418548 -61776884 - MER21B LTR ERV1 -79 784 630 9 1618 938 124 5 138 chr1 135418548 135418744 -61776688 - URR1B DNA MER1_type 0 225 56 9 1618 446 202 157 16 chr1 135418801 135418922 -61776510 + B1F SINE Alu 11 148 -1 9 1618 289 292 127 48 chr1 135418892 135419018 -61776414 - MER21B LTR ERV1 -195 668 533 9 1618 1153 114 27 16 chr1 135419036 135419223 -61776209 + B2_Mm1t SINE B2 1 189 -4 9 1618 340 276 80 11 chr1 135419391 135419479 -61775953 - RSINE1 SINE B4 -27 138 45 9 1618 580 203 60 20 chr1 135419754 135419934 -61775498 - B3 SINE B2 -1 194 6 9 1618 2249 93 36 3 chr1 135419987 135420288 -61775144 - RLTR10E LTR ERVK 0 311 1 9 1618 226 205 0 0 chr1 135420606 135420645 -61774787 + C-rich Low_complexity Low_complexity 4 42 0 9 1618 1245 239 83 9 chr1 135420649 135420974 -61774458 + ORR1D1 LTR MaLR 26 374 0 9 1618 337 336 43 7 chr1 135420974 135421087 -61774345 + B4A SINE B4 156 273 -19 9 1618 21 89 0 0 chr1 135421128 135421184 -61774248 + AT_rich Low_complexity Low_complexity 1 56 0 9 1618 536 292 59 128 chr1 135421933 135422124 -61773308 - RMER5 LTR ERV1 -1 533 345 9 1618 687 234 229 0 chr1 135422124 135422299 -61773133 - B3 SINE B2 -1 215 1 9 1618 536 292 59 128 chr1 135422299 135422444 -61772988 - RMER5 LTR ERV1 -190 344 220 9 1618 396 271 8 25 chr1 135422586 135422707 -61772725 + B4A SINE B4 1 119 -173 9 1618 739 229 27 43 chr1 135422730 135422917 -61772515 + RMER30 DNA MER1_type 19 202 0 9 1618 395 250 0 88 chr1 135422959 135422972 -61772460 + MT2B LTR ERVL 154 156 -445 9 1618 674 184 5 14 chr1 135422972 135423112 -61772320 + B1_Mus1 SINE Alu 3 136 -13 9 1618 340 314 15 68 chr1 135423079 135423212 -61772220 + B4A SINE B4 163 288 -4 9 1618 1274 33 0 43 chr1 135423706 135423894 -61771538 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 9 1618 272 146 0 35 chr1 135423894 135423951 -61771481 + C-rich Low_complexity Low_complexity 2 56 0 9 1618 805 147 0 30 chr1 135423967 135424100 -61771332 - B1_Mus1 SINE Alu -17 131 3 9 1618 673 255 41 46 chr1 135424156 135424353 -61771079 - RMER30 DNA MER1_type 0 202 7 9 1618 253 282 88 35 chr1 135424806 135424920 -61770512 + PB1D7 SINE Alu 1 120 0 9 1618 510 174 20 10 chr1 135425107 135425206 -61770226 + PB1D9 SINE Alu 19 118 -2 9 1618 239 177 122 37 chr1 135425251 135425333 -61770099 - L1M4c LINE L1 -3260 3122 3034 9 1618 370 250 0 0 chr1 135425354 135425422 -61770010 - ID4_ SINE ID -6 77 10 9 1618 246 296 42 0 chr1 135425440 135425511 -61769921 - PB1D9 SINE Alu -10 110 37 9 1618 446 224 191 6 chr1 135425618 135425780 -61769652 - L1M4c LINE L1 -3515 2867 2676 9 1618 1697 74 9 0 chr1 135425780 135426011 -61769421 + L1_Mus3 LINE L1 6404 6636 -2 9 1618 222 333 43 22 chr1 135426956 135427048 -61768384 - PB1D10 SINE Alu -10 107 14 9 1618 199 0 31 31 chr1 135427153 135427185 -61768247 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1618 428 216 29 0 chr1 135427185 135427287 -61768145 - L1M4c LINE L1 -3861 2521 2417 9 1618 263 106 0 41 chr1 135427609 135427658 -61767774 + (TGGGGG)n Simple_repeat Simple_repeat 1 47 0 9 1618 983 197 0 22 chr1 135427663 135427845 -61767587 - B3 SINE B2 -37 179 2 9 1618 349 230 83 172 chr1 135427951 135428067 -61767365 - L1M4c LINE L1 -4644 1740 1651 9 1618 334 270 0 0 chr1 135428067 135428141 -61767291 - ID4 SINE ID -5 78 5 9 1618 349 230 83 172 chr1 135428141 135428350 -61767082 - L1M4c LINE L1 -4734 1650 1444 9 1618 315 0 0 0 chr1 135428367 135428402 -61767030 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1618 1144 88 0 0 chr1 135428402 135428541 -61766891 - B1_Mus1 SINE Alu -8 140 2 9 1618 926 219 53 14 chr1 135428719 135428927 -61766505 - B3 SINE B2 0 216 1 9 1618 1074 269 126 25 chr1 135428927 135429462 -61765970 - L1M2 LINE L1 -790 5390 4784 9 1618 247 255 0 0 chr1 135429462 135429513 -61765919 - B1F SINE Alu 0 149 99 9 1618 356 286 163 56 chr1 135429514 135429692 -61765740 - RLTR24 LTR ERV1 0 529 333 9 1618 361 217 0 0 chr1 135429843 135429912 -61765520 - RLTR24 LTR ERV1 -454 75 7 9 1618 271 353 76 56 chr1 135429889 135429903 -61765529 - B4 SINE B4 -74 218 155 9 1618 518 259 9 26 chr1 135429903 135430018 -61765414 - B1F SINE Alu -36 113 1 9 1618 271 353 76 56 chr1 135430018 135430033 -61765399 - B4 SINE B4 -74 154 72 9 1618 2408 202 55 24 chr1 135430045 135430592 -61764840 - RLTR20B3 LTR ERVK -8 569 6 9 1618 1209 253 11 37 chr1 135430738 135431033 -61764399 + Lx9 LINE L1 7194 7487 -157 9 1618 1655 145 105 89 chr1 135431033 135431403 -61764029 + ORR1C1 LTR MaLR 1 376 -2 9 1618 1209 253 11 37 chr1 135431403 135431456 -61763976 + Lx9 LINE L1 7488 7533 -111 9 1618 448 169 14 0 chr1 135431458 135431529 -61763903 - PB1D9 SINE Alu -48 72 1 9 1618 294 29 0 0 chr1 135431648 135431683 -61763749 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 9 1618 354 257 88 98 chr1 135432104 135432298 -61763134 + L1M5 LINE L1 2857 3048 -3098 9 1618 667 150 16 96 chr1 135432299 135432394 -61763038 + B1_Mur4 SINE Alu 5 96 -54 9 1618 5024 122 124 8 chr1 135432394 135433249 -61762183 - RMER17B LTR ERVK -4 954 1 9 1618 667 150 16 96 chr1 135433249 135433278 -61762154 + B1_Mur4 SINE Alu 97 119 -31 9 1618 313 247 25 0 chr1 135433377 135433458 -61761974 + B3A SINE B2 4 86 -112 9 1618 391 178 0 0 chr1 135433478 135433551 -61761881 + RLTR19C LTR ERVK 18 90 -416 9 1618 368 20 20 0 chr1 135433659 135433708 -61761724 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1618 210 254 120 120 chr1 135433921 135434046 -61761386 + B3A SINE B2 73 197 -1 9 1618 356 232 14 0 chr1 135434268 135434337 -61761095 + B1_Mur1 SINE Alu 46 115 -34 9 1618 489 47 0 0 chr1 135434337 135434401 -61761031 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1618 661 320 85 19 chr1 135434405 135434676 -61760756 + MLT1F LTR MaLR 45 333 -215 9 1618 231 217 0 48 chr1 135434682 135434745 -61760687 + ID_B1 SINE B4 165 224 0 9 1618 203 95 48 0 chr1 135434749 135434791 -61760641 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 9 1618 614 281 43 6 chr1 135434875 135435083 -61760349 + B3A SINE B2 1 215 -1 9 1618 349 320 43 22 chr1 135435110 135435340 -61760092 + L1MEd LINE L1 965 1199 -4920 9 1618 213 300 112 82 chr1 135435386 135435409 -61760023 + RSINE1 SINE B4 3 23 -142 9 1618 1479 249 159 15 chr1 135435409 135435456 -61759976 - MT2A LTR ERVL 0 533 487 9 1618 333 0 0 0 chr1 135435456 135435493 -61759939 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1618 1479 249 159 15 chr1 135435493 135435909 -61759523 - MT2A LTR ERVL -47 486 5 9 1618 213 300 112 82 chr1 135435909 135435983 -61759449 + RSINE1 SINE B4 24 103 -62 9 1618 1205 56 0 0 chr1 135435987 135436131 -61759301 - B1_Mus1 SINE Alu 0 148 5 9 1618 1494 73 5 0 chr1 135436144 135436335 -61759097 - B2_Mm1a SINE B2 0 193 2 9 1618 244 306 28 0 chr1 135436335 135436407 -61759025 + RSINE1 SINE B4 92 165 0 9 1618 268 315 21 21 chr1 135436595 135436689 -61758743 + RSINE1 SINE B4 72 165 0 9 1618 213 274 0 0 chr1 135436689 135436773 -61758659 + (CA)n Simple_repeat Simple_repeat 1 84 0 9 1618 272 281 31 0 chr1 135436907 135436971 -61758461 + RSINE1 SINE B4 3 68 -97 9 1618 657 60 0 0 chr1 135437117 135437201 -61758231 - B1_Mus2 SINE Alu 0 147 64 9 1618 227 227 58 43 chr1 135437166 135437235 -61758197 - RLTR25A LTR ERVK -531 572 503 9 1618 607 279 98 111 chr1 135437302 135437459 -61757973 - ORR1E LTR MaLR -5 354 208 9 1618 658 207 87 54 chr1 135437459 135437643 -61757789 - B2_Mm2 SINE B2 -5 190 1 9 1618 607 279 98 111 chr1 135437643 135437844 -61757588 - ORR1E LTR MaLR -152 207 1 9 1618 384 155 0 0 chr1 135437984 135438055 -61757377 + GA-rich Low_complexity Low_complexity 4 74 0 9 1618 307 281 70 62 chr1 135438128 135438257 -61757175 - L1ME3A LINE L1 -7 6166 6037 9 1618 595 247 106 15 chr1 135439174 135439318 -61756114 + B3A SINE B2 7 159 -39 9 1618 252 0 0 0 chr1 135439318 135439346 -61756086 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1618 470 264 77 44 chr1 135439346 135439383 -61756049 + B2_Mm2 SINE B2 156 194 -1 9 1618 990 246 170 0 chr1 135439379 135439667 -61755765 + MTEb LTR MaLR 39 375 -4 1 1618 2155 289 131 55 chr1 135439673 135440966 -61754466 + MTEb-int LTR MaLR 2 1538 -42 1 1618 335 157 0 0 chr1 135440954 135441005 -61754427 + B1F SINE Alu 89 139 -10 1 1618 556 238 169 0 chr1 135441045 135441205 -61754227 + MTEb LTR MaLR 77 263 -116 1 1618 835 182 7 0 chr1 135441253 135441390 -61754042 + B1_Mur4 SINE Alu 12 149 -1 1 1618 236 255 136 68 chr1 135441499 135441617 -61753815 - LTR79 LTR ERVL -333 194 69 1 1618 856 176 34 0 chr1 135441981 135442129 -61753303 + RSINE1 SINE B4 3 155 -10 1 1618 1112 203 19 0 chr1 135442232 135442444 -61752988 + B3 SINE B2 1 216 0 1 1618 281 350 28 28 chr1 135442763 135442869 -61752563 + Charlie1a DNA MER1_type 29 134 -1321 1 1618 344 250 9 0 chr1 135442926 135443038 -61752394 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 1618 433 316 0 0 chr1 135443110 135443224 -61752208 + Charlie1a DNA MER1_type 552 665 -790 1 1618 1198 57 0 0 chr1 135443257 135443398 -61752034 + B1_Mus1 SINE Alu 2 142 -6 1 1618 995 84 7 0 chr1 135443400 135443543 -61751889 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 1 1618 1377 301 60 32 chr1 135443564 135444127 -61751305 + Charlie1a DNA MER1_type 609 1187 -268 1 1618 256 314 0 0 chr1 135444132 135444202 -61751230 + L1M6 LINE L1 1710 1779 -4717 1 1618 217 292 0 0 chr1 135444220 135444285 -61751147 + B4 SINE B4 2 66 -226 1 1618 276 222 71 47 chr1 135444287 135444372 -61751060 - RSINE1 SINE B4 -76 89 3 1 1618 751 169 28 0 chr1 135444674 135444816 -61750616 - URR1A DNA MER1_type 0 226 81 1 1618 452 225 0 0 chr1 135444948 135445037 -61750395 + B3A SINE B2 1 89 -109 1 1618 225 286 39 13 chr1 135446082 135446160 -61749272 - ORR1E LTR MaLR -222 137 58 1 1618 986 208 52 0 chr1 135447174 135447386 -61748046 - ID_B1 SINE B4 0 224 2 1 1618 22 0 0 0 chr1 135447816 135447838 -61747594 + AT_rich Low_complexity Low_complexity 1 22 0 1 1618 2044 147 104 0 chr1 135447931 135448305 -61747127 - MTC LTR MaLR -2 419 7 1 1618 6841 134 74 18 chr1 135448311 135448427 -61747005 - MTC-int LTR MaLR 0 1258 1150 1 1618 1576 53 0 5 chr1 135448427 135448618 -61746814 + B2_Mm2 SINE B2 1 190 -5 1 1618 6841 134 74 18 chr1 135448618 135449692 -61745740 - MTC-int LTR MaLR -109 1149 1 1 1618 2085 170 9 88 chr1 135449692 135450066 -61745366 - MTC LTR MaLR 0 421 83 1 1618 1695 31 0 0 chr1 135450066 135450258 -61745174 - B2_Mm1a SINE B2 0 193 2 1 1618 2085 170 9 88 chr1 135450258 135450340 -61745092 - MTC LTR MaLR -339 82 1 1 1618 22 0 0 0 chr1 135450545 135450567 -61744865 + AT_rich Low_complexity Low_complexity 1 22 0 1 1618 740 238 54 0 chr1 135450575 135450743 -61744689 + B3 SINE B2 2 178 -38 1 1618 630 272 11 32 chr1 135450866 135451052 -61744380 - B3A SINE B2 -16 182 1 1 1618 371 288 53 8 chr1 135451100 135451233 -61744199 + B1F2 SINE Alu 3 141 -8 1 1618 570 269 7 7 chr1 135451413 135451548 -61743884 + RSINE1 SINE B4 14 148 -17 1 1618 434 18 0 18 chr1 135451555 135451611 -61743821 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1618 188 34 0 33 chr1 135452193 135452223 -61743209 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1 1618 27261 128 7 22 chr1 135452637 135455394 -61740038 + L1_Mus4 LINE L1 740 3459 -2424 1 1618 690 96 178 31 chr1 135455394 135455523 -61739909 + B1_Mus1 SINE Alu 1 148 0 1 1618 27261 142 7 24 chr1 135455523 135457401 -61738031 + L1_Mus4 LINE L1 3460 5293 -590 1 1618 1247 111 5 41 chr1 135457401 135457598 -61737834 + B2_Mm2 SINE B2 1 190 -5 1 1618 27261 94 57 11 chr1 135457598 135458803 -61736629 + L1_Mus4 LINE L1 5294 6556 -80 1 1618 653 171 0 17 chr1 135458841 135458960 -61736472 - B1_Mur2 SINE Alu -1 148 32 1 1618 1991 205 35 0 chr1 135459001 135459401 -61736031 - MTD LTR MaLR -3 416 3 1 1618 810 31 0 0 chr1 135459412 135459509 -61735923 + (GAA)n Simple_repeat Simple_repeat 3 99 0 1 1618 398 237 43 0 chr1 135459641 135459734 -61735698 + PB1D10 SINE Alu 20 116 -1 1 1618 265 274 67 0 chr1 135460147 135460247 -61735185 + B3 SINE B2 25 137 -79 1 1618 334 281 48 10 chr1 135460371 135460475 -61734957 - PB1 SINE Alu -18 109 2 1 1618 610 250 15 0 chr1 135460510 135460646 -61734786 - ID_B1 SINE B4 -6 218 81 1 1618 691 12 0 0 chr1 135461871 135461956 -61733476 + L1Md_T LINE L1 6498 6582 0 1 1618 576 187 137 51 chr1 135461990 135462187 -61733245 - B3 SINE B2 -2 214 1 1 1618 8062 90 6 2 chr1 135462451 135463959 -61731473 - L1_Mus4 LINE L1 -1 6635 5123 1 1618 5678 128 12 46 chr1 135463958 135464262 -61731170 + L1_Mm LINE L1 4170 4471 -1412 1 1618 1194 62 0 0 chr1 135464262 135464408 -61731024 + B1_Mus1 SINE Alu 3 148 0 1 1618 5678 128 12 46 chr1 135464408 135465082 -61730350 + L1_Mm LINE L1 4472 5115 -768 1 1618 278 353 0 0 chr1 135465114 135465199 -61730233 + PB1 SINE Alu 39 123 -4 1 1618 1567 42 0 21 chr1 135465365 135465559 -61729873 - B2_Mm1a SINE B2 -2 191 2 1 1618 344 190 0 12 chr1 135465722 135465802 -61729630 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1618 310 305 80 51 chr1 135466173 135466349 -61729083 + MLT2C1 LTR ERVL 73 253 -144 1 1618 22 0 0 0 chr1 135466488 135466510 -61728922 + AT_rich Low_complexity Low_complexity 1 22 0 1 1618 887 171 7 0 chr1 135466513 135466653 -61728779 + B1_Mur2 SINE Alu 1 141 -8 1 1618 229 318 23 0 chr1 135466702 135466790 -61728642 - RSINE1 SINE B4 -2 163 74 1 1618 728 98 30 61 chr1 135466899 135467010 -61728422 + B1_Mur4 SINE Alu 23 137 -13 1 1618 215 31 0 30 chr1 135467010 135467043 -61728389 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1618 728 98 30 61 chr1 135467043 135467062 -61728370 + B1_Mur4 SINE Alu 138 149 -1 1 1618 200 143 53 18 chr1 135467063 135467120 -61728312 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1618 24 53 0 0 chr1 135467132 135467170 -61728262 + AT_rich Low_complexity Low_complexity 1 38 0 1 1618 378 297 16 48 chr1 135467211 135467335 -61728097 + PB1 SINE Alu 6 125 -2 1 1618 385 321 0 14 chr1 135467473 135467615 -61727817 + GA-rich Low_complexity Low_complexity 1 140 0 1 1618 307 186 86 0 chr1 135467617 135467687 -61727745 + PB1D9 SINE Alu 40 115 -5 1 1618 428 316 159 7 chr1 135467699 135467995 -61727437 + MLT1F1 LTR MaLR 161 501 -68 1 1618 525 172 0 0 chr1 135468238 135468331 -61727101 + B1_Mur2 SINE Alu 2 94 -55 1 1618 253 259 123 18 chr1 135468976 135469090 -61726342 + B3A SINE B2 1 126 -90 1 1618 221 182 0 0 chr1 135469222 135469266 -61726166 + RSINE1 SINE B4 3 46 -119 1 1618 432 314 76 0 chr1 135469594 135469712 -61725720 + ID_B1 SINE B4 89 215 -9 1 1618 311 321 104 69 chr1 135469712 135469731 -61725701 + B1F2 SINE Alu 35 149 0 1 1618 207 254 55 0 chr1 135470277 135470332 -61725100 + (TCTCTG)n Simple_repeat Simple_repeat 5 62 0 1 1618 233 227 44 29 chr1 135470713 135470781 -61724651 + B1_Mus2 SINE Alu 1 69 -78 1 1618 462 258 98 13 chr1 135470846 135470999 -61724433 - B4A SINE B4 -5 287 122 1 1618 511 319 0 0 chr1 135470998 135471133 -61724299 + B3A SINE B2 57 191 -7 1 1618 317 308 103 0 chr1 135471149 135471225 -61724207 + L1M4b LINE L1 2135 2221 -5113 1 1618 1219 68 0 0 chr1 135471225 135471373 -61724059 + B1_Mus1 SINE Alu 1 148 0 1 1618 317 308 103 0 chr1 135471373 135471403 -61724029 + L1M4b LINE L1 2222 2251 -5083 1 1618 683 138 68 17 chr1 135471475 135471593 -61723839 - B1_Mm SINE Alu -20 127 4 1 1618 340 284 125 15 chr1 135471593 135471609 -61723823 - B4 SINE B4 -69 221 73 1 1618 481 244 238 0 chr1 135471641 135471801 -61723631 + B3A SINE B2 1 198 0 1 1618 258 337 53 0 chr1 135471942 135472037 -61723395 + PB1D10 SINE Alu 9 108 -9 1 1618 1631 149 176 3 chr1 135472282 135472606 -61722826 - Lx5 LINE L1 -603 6447 6068 1 1618 200 35 35 0 chr1 135472726 135472755 -61722677 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1618 444 179 2 5 chr1 135472761 135472843 -61722589 + B1_Mur3 SINE Alu 1 80 -47 1 1618 2210 163 57 17 chr1 135472962 135473367 -61722065 - MTC LTR MaLR 0 421 1 1 1618 240 35 0 0 chr1 135473774 135473803 -61721629 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1 1618 1231 232 131 6 chr1 135473942 135474271 -61721161 - ORR1D2 LTR MaLR 0 370 1 1 1618 3463 30 2 128 chr1 135474326 135474825 -61720607 + RLTR10C LTR ERVK 1 436 0 1 1618 432 0 0 0 chr1 135475351 135475399 -61720033 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1618 889 266 9 5 chr1 135475811 135476026 -61719406 + B3 SINE B2 1 216 0 1 1618 455 182 93 68 chr1 135476215 135476333 -61719099 + MT2A LTR ERVL 3 123 -410 1 1618 189 0 0 0 chr1 135476349 135476370 -61719062 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1618 761 128 142 0 chr1 135476370 135476511 -61718921 - B2_Mm2 SINE B2 -34 161 1 1 1618 949 188 289 23 chr1 135476516 135476818 -61718614 + MT2A LTR ERVL 92 489 -44 1 1618 315 0 0 0 chr1 135476818 135476853 -61718579 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1618 949 188 289 23 chr1 135476853 135476899 -61718533 + MT2A LTR ERVL 490 533 0 1 1618 1174 301 44 58 chr1 135476905 135477627 -61717805 + L1_Rod LINE L1 1161 1857 -3990 1 1618 329 179 60 0 chr1 135477632 135477699 -61717733 + B1F SINE Alu 79 149 0 1 1618 572 318 116 23 chr1 135477746 135478004 -61717428 + B4 SINE B4 11 292 0 1 1618 223 260 20 0 chr1 135478050 135478100 -61717332 + ID4_ SINE ID 20 70 -13 1 1618 969 176 26 21 chr1 135478218 135478410 -61717022 + B2_Mm2 SINE B2 2 194 -1 1 1618 423 0 0 0 chr1 135478431 135478478 -61716954 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1618 846 78 0 0 chr1 135478549 135478664 -61716768 + (TTC)n Simple_repeat Simple_repeat 2 116 0 1 1618 637 278 110 0 chr1 135478664 135478837 -61716595 - B4A SINE B4 -85 207 16 1 1618 1161 57 0 0 chr1 135478910 135479050 -61716382 + B1_Mus2 SINE Alu 2 141 -6 1 1618 205 245 0 0 chr1 135479052 135479101 -61716331 + GA-rich Low_complexity Low_complexity 3 51 0 1 1618 387 308 9 0 chr1 135479103 135479210 -61716222 + PB1D10 SINE Alu 9 116 -1 1 1618 516 205 6 30 chr1 135479212 135479378 -61716054 + GA-rich Low_complexity Low_complexity 3 164 0 1 1618 1098 105 0 0 chr1 135479378 135479540 -61715892 + B2_Mm2 SINE B2 1 162 -33 1 1618 182 37 37 0 chr1 135479540 135479567 -61715865 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1618 747 142 276 6 chr1 135479616 135479786 -61715646 + B3 SINE B2 1 216 0 1 1618 204 125 0 0 chr1 135479810 135479842 -61715590 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1618 421 281 0 76 chr1 135479872 135479889 -61715543 + ID_B1 SINE B4 78 223 -1 1 1618 476 254 21 50 chr1 135479889 135480030 -61715402 + B1F1 SINE Alu 11 147 -2 1 1618 203 239 0 43 chr1 135480109 135480179 -61715253 + GA-rich Low_complexity Low_complexity 4 70 0 1 1618 207 0 0 0 chr1 135480205 135480228 -61715204 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 1 1618 695 303 90 34 chr1 135480254 135480592 -61714840 - LTR40b LTR ERVL -91 374 13 1 1618 247 282 71 0 chr1 135480607 135480692 -61714740 + L1MEf LINE L1 2068 2158 -4042 1 1618 459 279 92 75 chr1 135480769 135480943 -61714489 + ID_B1 SINE B4 39 215 -9 1 1618 585 0 0 0 chr1 135480943 135481008 -61714424 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1618 266 50 0 24 chr1 135481504 135481545 -61713887 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 1 1618 649 133 1 1 chr1 135481860 135481984 -61713448 + B1_Mus1 SINE Alu 4 127 -20 1 1618 2322 126 34 47 chr1 135482027 135482410 -61713022 - ORR1C1 LTR MaLR 0 378 1 1 1618 698 306 56 7 chr1 135482415 135482455 -61712977 + L1_Mur3 LINE L1 1466 1505 -4375 1 1618 393 22 0 0 chr1 135482455 135482501 -61712931 + (GGA)n Simple_repeat Simple_repeat 3 48 0 1 1618 698 306 56 7 chr1 135482501 135482763 -61712669 + L1_Mur3 LINE L1 1506 1782 -4098 1 1618 23 54 0 0 chr1 135482816 135482853 -61712579 + AT_rich Low_complexity Low_complexity 1 37 0 1 1618 4382 130 23 77 chr1 135482939 135483815 -61711617 - RMER21A LTR ERV1 -118 829 1 1 1618 484 281 147 30 chr1 135483815 135484162 -61711270 + Lx8 LINE L1 6980 7377 -96 1 1618 535 250 42 0 chr1 135484351 135484471 -61710961 - ID_B1 SINE B4 -8 216 92 1 1618 342 0 0 0 chr1 135484471 135484509 -61710923 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1618 771 172 0 29 chr1 135484516 135484654 -61710778 - B1_Mur2 SINE Alu -6 143 10 1 1618 491 254 76 21 chr1 135484641 135484786 -61710646 - RSINE1 SINE B4 -9 156 4 1 1618 1113 199 14 0 chr1 135484905 135485121 -61710311 + URR1B DNA MER1_type 7 225 0 1 1618 528 172 0 0 chr1 135485130 135485217 -61710215 - B1_Mur3 SINE Alu -57 92 6 1 1618 443 260 24 0 chr1 135485688 135485811 -61709621 - B3 SINE B2 -21 195 70 1 1618 1168 195 14 0 chr1 135486169 135486379 -61709053 + B3 SINE B2 4 216 0 1 1618 494 319 133 48 chr1 135486417 135486793 -61708639 + L1M3b LINE L1 190 597 -5684 1 1618 375 327 80 0 chr1 135487239 135487438 -61707994 + L1M3b LINE L1 971 1185 -5096 1 1618 559 282 23 0 chr1 135487483 135487614 -61707818 + ID_B1 SINE B4 88 221 -3 1 1618 294 248 61 44 chr1 135487875 135487989 -61707443 + PB1D10 SINE Alu 2 117 0 1 1618 180 0 0 0 chr1 135488227 135488247 -61707185 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1618 1313 162 9 9 chr1 135488247 135488459 -61706973 - B3 SINE B2 -4 212 1 1 1618 1511 106 0 13 chr1 135488470 135488700 -61706732 - L1Md_F2 LINE L1 0 6582 6356 1 1618 383 269 61 92 chr1 135489188 135489352 -61706080 - B4A SINE B4 -128 164 6 1 1618 662 185 122 72 chr1 135489357 135489578 -61705854 + L1M3b LINE L1 2320 2551 -3796 1 1618 1664 37 0 0 chr1 135489893 135490084 -61705348 + B2_Mm1t SINE B2 2 192 -1 1 1618 235 213 0 21 chr1 135490164 135490212 -61705220 - RSINE1 SINE B4 -106 59 13 1 1618 326 294 0 0 chr1 135490246 135490331 -61705101 + PB1D10 SINE Alu 19 103 -14 1 1618 321 157 214 0 chr1 135490332 135490402 -61705030 + L1M3b LINE L1 3569 3653 -2694 1 1618 189 0 0 0 chr1 135490446 135490467 -61704965 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 1 1618 248 120 20 20 chr1 135490472 135490523 -61704909 + L1M3b LINE L1 3649 3699 -2648 1 1618 230 263 184 43 chr1 135490625 135490788 -61704644 + L1M3b LINE L1 3695 3880 -2467 1 1618 414 174 0 71 chr1 135490820 135490919 -61704513 - B1_Mur1 SINE Alu 0 149 58 1 1618 405 238 0 0 chr1 135493969 135494049 -61701383 + ID4 SINE ID 1 80 -3 1 1618 323 323 35 0 chr1 135494119 135494237 -61701195 + PB1D10 SINE Alu 5 133 -16 1 1618 504 294 62 7 chr1 135494873 135495017 -61700415 - RSINE1 SINE B4 -12 153 2 1 1618 417 204 118 0 chr1 135495095 135495204 -61700228 - PB1D9 SINE Alu 0 120 1 1 1618 239 270 0 16 chr1 135495148 135495212 -61700220 - B4A SINE B4 -152 140 78 1 1618 452 269 0 66 chr1 135495577 135495599 -61699833 + ID_B1 SINE B4 68 223 -1 1 1618 822 179 0 0 chr1 135495599 135495744 -61699688 + B1_Mur4 SINE Alu 6 150 0 1 1618 647 274 86 74 chr1 135495871 135496210 -61699222 + MTE2b LTR MaLR 21 363 -16 1 1618 853 152 30 0 chr1 135496445 135496577 -61698855 + B1_Mur4 SINE Alu 1 136 -14 1 1618 216 0 0 0 chr1 135496583 135496607 -61698825 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1618 561 241 109 0 chr1 135496737 135496874 -61698558 + RSINE1 SINE B4 2 153 -12 1 1618 658 179 81 0 chr1 135497195 135497318 -61698114 + B1_Mus1 SINE Alu 1 133 -15 1 1618 253 254 0 17 chr1 135497318 135497373 -61698059 + G-rich Low_complexity Low_complexity 4 57 0 1 1618 350 284 152 56 chr1 135497383 135497581 -61697851 + B4 SINE B4 1 217 -75 1 1618 270 205 224 35 chr1 135497985 135498101 -61697331 + L1_Rod LINE L1 5611 5748 -99 1 1618 817 256 28 28 chr1 135498392 135498609 -61696823 + ID_B1 SINE B4 6 222 -2 1 1618 258 313 157 0 chr1 135498630 135498713 -61696719 + B1F1 SINE Alu 4 99 -50 1 1618 323 250 133 22 chr1 135498750 135498885 -61696547 + B3 SINE B2 3 152 -64 1 1618 183 129 0 0 chr1 135498900 135498931 -61696501 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1 1618 343 307 50 14 chr1 135498940 135499079 -61696353 + RSINE1 SINE B4 12 155 -10 1 1618 474 203 125 22 chr1 135499226 135499362 -61696070 + B1_Mur4 SINE Alu 1 150 0 1 1618 316 298 118 0 chr1 135499475 135499693 -61695739 - B4 SINE B4 -35 257 2 1 1618 226 276 39 26 chr1 135500152 135500230 -61695202 - ID4 SINE ID 0 83 5 1 1618 260 240 186 20 chr1 135500996 135501098 -61694334 + PB1D7 SINE Alu 2 120 0 2 1618 262 224 58 12 chr1 135501542 135501623 -61693809 + PB1D10 SINE Alu 25 111 -9 3 1618 697 117 99 8 chr1 135501666 135501787 -61693645 + B1_Mur4 SINE Alu 1 132 -18 4 1618 1204 188 4 4 chr1 135502316 135502541 -61692891 - URR1B DNA MER1_type 0 225 1 5 1618 512 217 60 30 chr1 135502793 135502926 -61692506 + ID_B1 SINE B4 87 223 -1 6 1618 479 278 35 122 chr1 135503310 135503507 -61691925 - B3A SINE B2 -1 194 15 7 1618 400 301 45 8 chr1 135503513 135503647 -61691785 - B1F2 SINE Alu -8 141 3 8 1618 266 221 56 42 chr1 135503705 135503776 -61691656 - ID2 SINE ID -9 74 3 9 1618 380 178 99 11 chr1 135504307 135504398 -61691034 + PB1D10 SINE Alu 17 115 -2 1 1618 703 208 44 19 chr1 135504403 135504588 -61690844 + B3 SINE B2 2 188 -7 1 1618 524 250 190 22 chr1 135504699 135504883 -61690549 + B3 SINE B2 1 215 -1 1 1618 1059 75 0 0 chr1 135505126 135505273 -61690159 - B1_Mus1 SINE Alu 0 148 2 1 1618 256 246 223 18 chr1 135507412 135507524 -61687908 + B1F1 SINE Alu 13 147 -2 1 1618 732 256 121 0 chr1 135507633 135507840 -61687592 + B4A SINE B4 51 282 -10 1 1618 455 241 32 76 chr1 135507917 135508074 -61687358 - Tigger5 DNA MER2_type -2237 169 20 1 1618 405 0 0 0 chr1 135508078 135508123 -61687309 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1618 36 23 0 0 chr1 135508308 135508351 -61687081 + AT_rich Low_complexity Low_complexity 1 43 0 1 1618 978 142 7 0 chr1 135508536 135508684 -61686748 - B1_Mur2 SINE Alu 0 149 1 1 1618 395 292 0 30 chr1 135508987 135509086 -61686346 + RSINE1 SINE B4 1 96 -69 2 1618 487 258 121 0 chr1 135509108 135509240 -61686192 + B1_Mur3 SINE Alu 2 149 0 2 1618 876 129 50 0 chr1 135509531 135509670 -61685762 - B1_Mus1 SINE Alu -1 147 2 2 1618 1246 184 14 0 chr1 135509679 135509891 -61685541 - B3 SINE B2 -1 215 1 2 1618 25 31 0 0 chr1 135509934 135509966 -61685466 + AT_rich Low_complexity Low_complexity 1 32 0 2 1618 230 288 39 64 chr1 135510400 135510478 -61684954 - MER96 DNA hAT -99 76 1 2 1618 516 242 121 40 chr1 135510529 135510727 -61684705 + B3 SINE B2 1 214 -2 2 1618 928 140 28 0 chr1 135510819 135510962 -61684470 + B1_Mus2 SINE Alu 1 147 0 2 1618 863 217 74 0 chr1 135511014 135511203 -61684229 - B3 SINE B2 -13 203 1 2 1618 289 215 63 0 chr1 135511422 135511580 -61683852 + (CAG)n Simple_repeat Simple_repeat 1 168 0 2 1618 299 263 87 48 chr1 135511784 135511806 -61683626 - B1_Mur3 SINE Alu -40 109 3 3 1618 368 272 0 0 chr1 135511806 135511887 -61683545 - ID_B1 SINE B4 -60 164 84 3 1618 1066 103 119 11 chr1 135512168 135512344 -61683088 - B2_Mm2 SINE B2 0 195 1 3 1618 347 202 43 0 chr1 135512365 135512459 -61682973 + MLT1B LTR MaLR 76 173 -217 3 1618 297 234 24 47 chr1 135512459 135512544 -61682888 + ID4_ SINE ID 1 83 0 3 1618 325 250 0 0 chr1 135512818 135512882 -61682550 - ID4 SINE ID -10 73 10 3 1618 576 182 102 16 chr1 135512942 135513070 -61682362 - B1_Mur2 SINE Alu -10 139 1 3 1618 638 243 88 16 chr1 135513215 135513407 -61682025 + B3 SINE B2 1 206 -10 3 1618 511 179 170 0 chr1 135513425 135513537 -61681895 + B1_Mm SINE Alu 2 132 -15 3 1618 285 29 0 0 chr1 135513540 135513574 -61681858 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1618 538 288 61 7 chr1 135513649 135513796 -61681636 + ID_B1 SINE B4 4 158 -66 4 1618 520 282 49 14 chr1 135513939 135514083 -61681349 + B1_Mur1 SINE Alu 1 149 0 4 1618 255 226 167 56 chr1 135514110 135514218 -61681214 - B1F2 SINE Alu 0 120 1 4 1618 480 231 60 13 chr1 135514243 135514392 -61681040 + B3A SINE B2 29 184 -14 4 1618 297 277 134 0 chr1 135515066 135515178 -61680254 - RSINE1 SINE B4 0 165 39 4 1618 253 298 194 24 chr1 135515244 135515368 -61680064 - RSINE1 SINE B4 -19 146 2 4 1618 390 280 87 16 chr1 135515424 135515551 -61679881 + ID_B1 SINE B4 36 171 -53 4 1618 247 333 53 40 chr1 135515689 135515839 -61679593 + Charlie13a DNA Charlie 741 892 -622 4 1618 198 0 0 0 chr1 135518071 135518093 -61677339 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1618 699 265 98 51 chr1 135518833 135519107 -61676325 - B4A SINE B4 -1 291 5 4 1618 274 200 110 24 chr1 135519132 135519214 -61676218 - PB1D9 SINE Alu -2 118 30 5 1618 216 233 0 0 chr1 135519335 135519378 -61676054 - ID4_ SINE ID -39 44 2 5 1618 603 183 27 47 chr1 135519839 135519988 -61675444 + B1_Mur2 SINE Alu 3 148 -1 5 1618 239 350 157 20 chr1 135520112 135520214 -61675218 + PB1D10 SINE Alu 1 116 -1 5 1618 369 193 102 0 chr1 135520307 135520395 -61675037 - ID_B1 SINE B4 -20 204 108 5 1618 533 244 111 0 chr1 135520395 135520623 -61674809 + MERVL_2A-int LTR ERVL 239 553 -5208 5 1618 319 252 142 0 chr1 135520660 135520787 -61674645 + MT2A LTR ERVL 389 533 0 5 1618 355 186 29 0 chr1 135520804 135520874 -61674558 - ID SINE ID -151 73 2 5 1618 303 172 78 0 chr1 135521833 135521897 -61673535 + B3A SINE B2 11 79 -119 5 1618 735 184 35 7 chr1 135521954 135522096 -61673336 + B1_Mur2 SINE Alu 4 149 0 5 1618 261 0 0 0 chr1 135522581 135522610 -61672822 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1618 733 56 16 6 chr1 135522612 135522717 -61672715 - B1_Mus2 SINE Alu -6 141 1 6 1618 1089 212 178 19 chr1 135522747 135523107 -61672325 + MTD LTR MaLR 3 419 0 6 1618 950 236 34 0 chr1 135524760 135524968 -61670464 + B3 SINE B2 2 216 0 6 1618 436 284 28 85 chr1 135525705 135525882 -61669550 + MER58A DNA MER1_type 19 185 -39 6 1618 1042 48 8 0 chr1 135525902 135526027 -61669405 + L1Md_F2 LINE L1 6067 6192 -390 6 1618 184 281 18 0 chr1 135526031 135526088 -61669344 - L3 LINE CR1 -1391 3098 3041 6 1618 234 192 0 55 chr1 135526294 135526349 -61669083 + B1_Mur3 SINE Alu 73 124 -25 6 1618 278 294 48 48 chr1 135526509 135526634 -61668798 + RSINE1 SINE B4 41 165 0 6 1618 550 202 105 0 chr1 135526703 135526817 -61668615 - B1_Mur1 SINE Alu -1 148 23 6 1618 363 222 59 17 chr1 135526898 135527017 -61668415 - 7SK RNA RNA -185 146 23 6 1618 734 205 0 0 chr1 135527323 135527445 -61667987 + RLTR19-int LTR ERVK 5477 5598 -539 7 1618 2436 149 47 93 chr1 135527632 135528180 -61667252 + RLTR19-int LTR ERVK 5612 6134 -3 7 202 2652 180 35 2 chr1 135528182 135528672 -61666760 + RLTR19C LTR ERVK 1 506 0 7 1619 499 158 69 82 chr1 135528865 135528999 -61666433 - B3A SINE B2 0 198 70 7 1619 798 194 21 7 chr1 135529168 135529313 -61666119 - B1_Mur2 SINE Alu 0 149 3 7 1619 216 0 0 0 chr1 135529339 135529363 -61666069 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1619 359 239 84 63 chr1 135529367 135529510 -61665922 - RSINE1 SINE B4 -15 150 5 7 1619 1771 200 57 22 chr1 135529696 135530100 -61665332 - MTD LTR MaLR 0 419 2 7 1619 554 168 143 8 chr1 135530522 135530648 -61664784 + B1_Mus1 SINE Alu 6 148 0 7 1619 2249 146 96 0 chr1 135530910 135531294 -61664138 + MTC LTR MaLR 1 421 0 7 1619 1281 27 0 0 chr1 135531386 135531534 -61663898 + B1_Mus1 SINE Alu 1 148 0 7 1619 181 232 0 28 chr1 135531644 135531715 -61663717 + GA-rich Low_complexity Low_complexity 2 70 0 7 1619 1396 65 32 0 chr1 135531752 135531937 -61663495 - B2_Mm2 SINE B2 -2 193 3 8 1619 287 49 24 0 chr1 135532100 135532141 -61663291 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 8 1619 503 199 101 58 chr1 135532141 135532272 -61663160 - B1_Mur2 SINE Alu -9 140 1 8 1619 2424 152 14 26 chr1 135532957 135533068 -61662364 + MTC LTR MaLR 1 111 -310 8 1619 1168 112 79 97 chr1 135533068 135533296 -61662136 + URR1A DNA MER1_type 1 224 -2 8 1619 2424 152 14 26 chr1 135533296 135533610 -61661822 + MTC LTR MaLR 112 421 0 8 1619 440 298 118 41 chr1 135534447 135534692 -61660740 - B4A SINE B4 -10 282 19 8 1619 809 182 14 0 chr1 135534748 135534891 -61660541 + B1_Mur3 SINE Alu 1 145 -4 8 1619 1029 81 0 0 chr1 135536188 135536337 -61659095 + (GA)n Simple_repeat Simple_repeat 1 149 0 8 1619 336 284 0 11 chr1 135536340 135536429 -61659003 - PB1D10 SINE Alu -20 97 10 8 1619 347 234 0 0 chr1 135536505 135536582 -61658850 + ID4 SINE ID 5 81 -2 8 1619 253 244 61 0 chr1 135536692 135536774 -61658658 + PB1D7 SINE Alu 28 114 -6 9 1619 308 333 0 0 chr1 135536772 135536877 -61658555 - MER58B DNA MER1_type -24 317 213 9 1619 887 294 28 21 chr1 135537674 135537959 -61657473 - B4A SINE B4 -5 287 1 9 1619 367 250 22 72 chr1 135537959 135538088 -61657344 + MER82 DNA MER2_type 55 177 -476 9 1619 677 202 62 0 chr1 135538090 135538219 -61657213 + B1_Mur3 SINE Alu 5 141 -8 9 1619 372 248 82 15 chr1 135538280 135538415 -61657017 + MER82 DNA MER2_type 213 356 -297 9 1619 434 288 97 56 chr1 135538821 135538840 -61656592 - B3 SINE B2 -7 209 189 9 1619 186 43 0 0 chr1 135538840 135538863 -61656569 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1619 434 288 97 56 chr1 135538863 135539038 -61656394 - B3 SINE B2 -28 188 7 9 1619 189 74 0 0 chr1 135539305 135539332 -61656100 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1619 417 265 115 38 chr1 135539350 135539507 -61655925 + MER68 LTR ERVL 72 240 -323 9 1619 209 130 0 80 chr1 135540407 135540457 -61654975 + GA-rich Low_complexity Low_complexity 2 47 0 9 1619 290 268 158 58 chr1 135540590 135540780 -61654652 + L1MC4 LINE L1 6698 6906 -1136 1 1619 480 280 86 13 chr1 135540990 135541142 -61654290 + RSINE1 SINE B4 3 165 0 1 1619 704 233 122 0 chr1 135541285 135541474 -61653958 + B3 SINE B2 1 212 -4 1 1619 266 274 67 17 chr1 135541697 135541816 -61653616 + L1MC4 LINE L1 7777 7901 -141 1 1619 803 198 124 5 chr1 135541818 135542011 -61653421 - B3 SINE B2 0 216 1 1 1619 293 307 84 35 chr1 135542038 135542180 -61653252 + RSINE1 SINE B4 3 151 -14 1 1619 524 223 196 26 chr1 135542601 135542790 -61652642 - B4 SINE B4 -69 223 3 1 1619 544 250 36 7 chr1 135542812 135542949 -61652483 - B1_Mur1 SINE Alu -6 143 3 1 1619 1072 127 0 0 chr1 135543161 135543319 -61652113 + B2_Mm2 SINE B2 1 158 -37 1 1619 225 0 0 0 chr1 135543320 135543345 -61652087 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1619 809 131 241 0 chr1 135543347 135543492 -61651940 + B2_Mm2 SINE B2 2 181 -14 1 1619 788 173 70 32 chr1 135545296 135545481 -61649951 + B2_Mm2 SINE B2 1 192 -3 1 1619 311 212 15 0 chr1 135545519 135545585 -61649847 + B3 SINE B2 41 107 -109 1 1619 270 0 0 0 chr1 135545637 135545667 -61649765 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 1 1619 437 150 45 8 chr1 135545961 135546095 -61649337 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1619 249 308 43 32 chr1 135546268 135546279 -61649153 - PB1D10 SINE Alu -1 116 106 1 1619 1152 56 28 0 chr1 135546279 135546423 -61649009 - B1_Mus1 SINE Alu 0 148 1 1 1619 249 308 43 32 chr1 135546423 135546505 -61648927 - PB1D10 SINE Alu -12 105 23 1 1619 446 212 14 77 chr1 135546670 135546687 -61648745 + ID_B1 SINE B4 80 213 -11 1 1619 685 113 32 16 chr1 135546687 135546813 -61648619 + B1F1 SINE Alu 11 138 -11 1 1619 1839 116 56 13 chr1 135546810 135547116 -61648316 - ORR1A2 LTR MaLR -8 319 1 1 1619 275 245 50 91 chr1 135547282 135547403 -61648029 + B4A SINE B4 38 153 -139 1 1619 1158 49 14 0 chr1 135547581 135547725 -61647707 + B1_Mus1 SINE Alu 2 147 -1 1 1619 1172 53 0 0 chr1 135547727 135547879 -61647553 + B2_Mm2 SINE B2 1 152 -43 1 1619 225 0 0 0 chr1 135547887 135547912 -61647520 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1619 464 221 96 30 chr1 135547912 135548047 -61647385 + ID_B1 SINE B4 81 224 0 1 1619 278 295 52 10 chr1 135548164 135548260 -61647172 - ID_B1 SINE B4 -112 112 13 1 1619 297 109 0 0 chr1 135548261 135548307 -61647125 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1619 659 165 26 9 chr1 135548448 135548564 -61646868 + B1_Mur3 SINE Alu 6 123 -26 1 1619 1513 62 5 5 chr1 135549016 135549209 -61646223 + B2_Mm1a SINE B2 1 193 0 1 1619 402 258 0 0 chr1 135549221 135549314 -61646118 + B4A SINE B4 2 94 -198 1 1619 180 111 0 0 chr1 135549477 135549504 -61645928 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1619 183 186 0 0 chr1 135550921 135550964 -61644468 + A-rich Low_complexity Low_complexity 1 43 0 1 1619 28 29 0 0 chr1 135551733 135551768 -61643664 + AT_rich Low_complexity Low_complexity 1 35 0 1 1619 448 256 17 25 chr1 135553004 135553124 -61642308 - PB1 SINE Alu -7 120 2 1 1619 192 345 0 0 chr1 135556400 135556458 -61638974 - MIR3 SINE MIR -36 172 115 1 1619 602 226 16 0 chr1 135558312 135558439 -61636993 + B1_Mur2 SINE Alu 21 149 0 1 1619 279 0 0 0 chr1 135558439 135558470 -61636962 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1619 449 228 86 29 chr1 135558557 135558697 -61636735 - B1F2 SINE Alu -1 148 1 1 1619 981 81 0 0 chr1 135558704 135558840 -61636592 + (TTTC)n Simple_repeat Simple_repeat 3 138 0 1 1619 1457 35 41 0 chr1 135558840 135559012 -61636420 - B2_Mm2 SINE B2 -15 180 2 1 1619 1127 88 0 7 chr1 135559218 135559366 -61636066 - B1_Mus1 SINE Alu 0 148 2 1 1619 345 82 0 0 chr1 135559563 135559612 -61635820 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1619 539 244 32 37 chr1 135559726 135559749 -61635683 + ID_B1 SINE B4 64 160 -132 1 1619 897 121 14 0 chr1 135559749 135559889 -61635543 + B1_Mus2 SINE Alu 6 147 0 1 1619 539 244 32 37 chr1 135559889 135559905 -61635527 + ID_B1 SINE B4 161 239 -53 1 1619 261 268 60 30 chr1 135560023 135560123 -61635309 - PB1D10 SINE Alu 0 117 15 1 1619 365 309 111 42 chr1 135560282 135560471 -61634961 - MER102b DNA MER1_type 0 341 140 1 1619 259 270 0 0 chr1 135560633 135560696 -61634736 - B4 SINE B4 -122 170 108 1 1619 408 174 0 14 chr1 135560702 135560772 -61634660 + RMER13B LTR ERVK 1 69 -839 1 1619 1144 186 18 23 chr1 135560746 135560966 -61634466 - RMER13B LTR ERVK -689 219 1 1 1619 214 380 32 11 chr1 135560974 135561067 -61634365 - B4 SINE B4 -196 96 2 1 1619 3159 186 72 11 chr1 135561213 135561884 -61633548 + ORR1C2-int LTR MaLR 694 1499 -10 1 1619 435 70 0 0 chr1 135561894 135561951 -61633481 + ORR1C2 LTR MaLR 1 57 -327 1 1619 276 237 0 0 chr1 135561984 135562043 -61633389 + ORR1C2 LTR MaLR 57 115 -269 1 1619 216 0 0 0 chr1 135562047 135562071 -61633361 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1619 730 172 29 59 chr1 135562083 135562219 -61633213 + B1_Mur3 SINE Alu 18 149 0 1 1619 1254 41 0 0 chr1 135562252 135562399 -61633033 + B1_Mus2 SINE Alu 1 147 0 1 1619 1318 224 22 71 chr1 135562413 135562735 -61632697 + ORR1C2 LTR MaLR 78 383 -1 1 1619 470 188 10 0 chr1 135562871 135562972 -61632460 + (TA)n Simple_repeat Simple_repeat 1 102 0 1 1619 487 259 72 29 chr1 135563318 135563457 -61631975 - ID_B1 SINE B4 0 224 80 1 1619 939 63 8 8 chr1 135563623 135563750 -61631682 - B1_Mus1 SINE Alu -21 127 1 1 1619 511 226 47 24 chr1 135563636 135563763 -61631669 - B4 SINE B4 -88 204 75 1 1619 522 229 57 0 chr1 135563801 135563906 -61631526 - ID_B1 SINE B4 -20 204 94 1 1619 332 306 6 81 chr1 135563997 135564157 -61631275 + B1F2 SINE Alu 1 148 -1 1 1619 477 307 58 64 chr1 135564341 135564708 -61630724 + RLTR12B LTR ERVK 16 245 -114 1 1619 1388 63 0 36 chr1 135564919 135565115 -61630317 + B2_Mm2 SINE B2 2 190 -5 1 1619 1012 171 109 0 chr1 135565717 135565910 -61629522 + B3 SINE B2 3 216 0 1 1619 23 0 0 0 chr1 135565911 135565934 -61629498 + AT_rich Low_complexity Low_complexity 1 23 0 1 1619 21 57 0 0 chr1 135565978 135566013 -61629419 + AT_rich Low_complexity Low_complexity 1 35 0 1 1619 613 226 0 24 chr1 135566031 135566158 -61629274 + B1_Mus1 SINE Alu 24 147 -1 1 1619 1204 68 0 0 chr1 135566171 135566319 -61629113 + B1_Mus1 SINE Alu 1 148 0 1 1619 663 227 28 0 chr1 135566375 135566516 -61628916 + B1_Mur2 SINE Alu 1 145 -4 1 1619 639 0 0 0 chr1 135566516 135566587 -61628845 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1619 183 80 0 0 chr1 135567364 135567389 -61628043 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1619 1105 59 0 0 chr1 135567389 135567525 -61627907 - B1_Mus1 SINE Alu -11 137 2 1 1619 751 174 47 7 chr1 135567526 135567676 -61627756 + Lx7 LINE L1 6895 7050 -646 1 1619 341 164 14 0 chr1 135567682 135567755 -61627677 + CT-rich Low_complexity Low_complexity 1 74 0 1 1619 320 275 12 0 chr1 135567767 135567847 -61627585 - ID4 SINE ID 0 83 3 1 1619 233 157 19 38 chr1 135567859 135567912 -61627520 - PB1D9 SINE Alu -1 119 68 1 1619 260 270 0 92 chr1 135567909 135568007 -61627425 - ORR1D2 LTR MaLR -10 360 272 1 1619 684 181 22 29 chr1 135567989 135568126 -61627306 - B1_Mur2 SINE Alu -6 143 8 1 1619 259 273 44 120 chr1 135568029 135568187 -61627245 - MT2B2 LTR ERVL -326 258 113 1 1619 243 0 0 0 chr1 135568266 135568293 -61627139 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1619 536 205 143 32 chr1 135568328 135568454 -61626978 - B1F2 SINE Alu -9 140 1 1 1619 816 297 88 9 chr1 135568723 135569155 -61626277 - L1M2 LINE L1 -878 5265 4800 1 1619 1577 36 0 68 chr1 135569260 135569290 -61626142 - B2_Mm1t SINE B2 0 193 166 1 1619 1707 31 0 0 chr1 135569290 135569483 -61625949 + B2_Mm1a SINE B2 1 193 0 1 1619 1577 36 0 68 chr1 135569483 135569659 -61625773 - B2_Mm1t SINE B2 -28 165 1 1 1619 1173 75 0 0 chr1 135569662 135569808 -61625624 - B1_Mus2 SINE Alu -1 146 1 1 1619 371 176 11 0 chr1 135569838 135569929 -61625503 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1619 1097 290 61 83 chr1 135569929 135570881 -61624551 - L1M2 LINE L1 -1342 4801 3871 1 1619 344 303 62 27 chr1 135570949 135571061 -61624371 + MTE2a LTR MaLR 1 116 -263 1 1619 386 284 8 79 chr1 135571179 135571305 -61624127 - MER45B DNA Tip100 -833 207 91 1 1619 276 286 163 0 chr1 135571307 135571405 -61624027 + B1F SINE Alu 2 115 -34 1 1619 375 339 9 0 chr1 135571317 135571432 -61624000 + ID_B1 SINE B4 106 221 -3 1 1619 539 228 119 1 chr1 135571915 135572049 -61623383 + MT2A LTR ERVL 4 144 -457 1 1619 1262 48 0 0 chr1 135572125 135572272 -61623160 - B1_Mm SINE Alu 0 147 1 1 1619 779 299 141 42 chr1 135572374 135572558 -61622874 - L1MD3 LINE L1 -221 7774 7565 1 1619 480 286 60 0 chr1 135572558 135572726 -61622706 - B3A SINE B2 -18 180 3 1 1619 779 306 138 36 chr1 135572726 135573238 -61622194 - L1MD3 LINE L1 -431 7564 7013 1 1619 2978 151 27 27 chr1 135573290 135573814 -61621618 + RLTR12B LTR ERVK 5 528 0 1 1619 1295 20 0 0 chr1 135573852 135573999 -61621433 + B1_Mm SINE Alu 1 147 0 1 1619 210 71 0 0 chr1 135573999 135574027 -61621405 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1619 258 32 0 0 chr1 135574044 135574075 -61621357 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1619 347 145 0 14 chr1 135574115 135574185 -61621247 + CT-rich Low_complexity Low_complexity 2 70 0 1 1619 379 305 0 84 chr1 135574220 135574363 -61621069 - L1MD3 LINE L1 -1062 6820 6690 1 1619 231 61 0 0 chr1 135574368 135574401 -61621031 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1 1619 408 256 39 8 chr1 135574407 135574537 -61620895 + L1M2 LINE L1 5329 5462 -835 1 1619 4241 185 123 71 chr1 135574802 135575814 -61619618 + RMER1B Other Other 1 1065 -1 1 1619 264 117 210 32 chr1 135575863 135575925 -61619507 - L1MC4a LINE L1 -1386 6496 6424 2 1619 543 45 0 0 chr1 135577588 135577655 -61617777 + B1_Mus2 SINE Alu 81 147 0 2 1619 317 364 90 10 chr1 135577692 135577892 -61617540 + MIR SINE MIR 1 216 -46 2 1619 375 23 0 0 chr1 135577988 135578032 -61617400 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1619 245 249 121 98 chr1 135578033 135578138 -61617294 - PB1D10 SINE Alu -11 109 1 2 1619 299 111 0 85 chr1 135578155 135578214 -61617218 + RLTR19 LTR ERVK 1 54 -445 2 1619 815 169 0 0 chr1 135578335 135578465 -61616967 - B1_Mus1 SINE Alu -17 131 2 2 1619 1132 186 5 36 chr1 135578821 135579044 -61616388 + B3 SINE B2 1 216 0 2 1619 319 283 88 9 chr1 135579293 135579407 -61616025 - B1F SINE Alu -26 123 1 2 1619 1711 149 83 50 chr1 135581313 135581595 -61613837 + ORR1B2 LTR MaLR 2 308 -59 2 1619 1082 95 117 18 chr1 135581595 135581766 -61613666 - B2_Mm2 SINE B2 -6 189 2 2 1619 1711 149 83 50 chr1 135581766 135581822 -61613610 + ORR1B2 LTR MaLR 309 351 -16 2 1619 679 284 42 10 chr1 135581857 135582049 -61613383 + B3A SINE B2 1 198 0 2 1619 282 330 102 37 chr1 135582137 135582337 -61613095 - MIRb SINE MIR -47 221 4 2 1619 575 340 114 49 chr1 135582738 135583062 -61612370 + L2a LINE L2 2368 2736 -683 2 1619 197 33 0 32 chr1 135583062 135583093 -61612339 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2 1619 575 340 114 49 chr1 135583093 135583104 -61612328 + L2a LINE L2 2737 2742 -677 2 1619 1160 58 0 0 chr1 135583104 135583242 -61612190 - B1_Mus2 SINE Alu -8 139 2 2 1619 575 321 162 52 chr1 135583242 135583820 -61611612 + L2a LINE L2 2743 3426 0 2 1619 1656 265 108 30 chr1 135583859 135584527 -61610905 + L1MA8 LINE L1 5555 6274 -17 2 1619 642 223 66 0 chr1 135584601 135584722 -61610710 + RSINE1 SINE B4 2 130 -35 2 1619 917 70 0 15 chr1 135585746 135585877 -61609555 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 2 1619 416 263 45 25 chr1 135585889 135586039 -61609393 - ID_B1 SINE B4 -68 156 5 2 1619 517 317 33 0 chr1 135586148 135586268 -61609164 + RSINE1 SINE B4 3 126 -39 2 1619 405 0 0 0 chr1 135586272 135586317 -61609115 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1619 523 304 27 7 chr1 135586963 135587109 -61608323 - RSINE1 SINE B4 -8 157 9 2 1619 364 298 39 0 chr1 135587128 135587232 -61608200 - PB1D7 SINE Alu 0 120 13 2 1619 571 244 0 64 chr1 135587274 135587303 -61608129 - B1_Mur4 SINE Alu -13 137 110 2 1619 780 11 0 0 chr1 135587303 135587392 -61608040 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2 1619 510 61 0 0 chr1 135587392 135587457 -61607975 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 2 1619 1130 63 0 7 chr1 135587458 135587602 -61607830 - B1_Mm SINE Alu 0 147 5 2 1619 571 244 0 64 chr1 135587602 135587709 -61607723 - B1_Mur4 SINE Alu -41 109 8 2 1619 770 120 8 17 chr1 135588490 135588609 -61606823 + B1_Mm SINE Alu 17 134 -13 2 1619 281 18 88 18 chr1 135588609 135588666 -61606766 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 2 1619 785 96 8 39 chr1 135588673 135588803 -61606629 + B1_Mus1 SINE Alu 23 148 0 2 1619 402 221 158 0 chr1 135589252 135589347 -61606085 - PB1D10 SINE Alu -5 112 3 2 1619 360 0 0 0 chr1 135589605 135589645 -61605787 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1619 2204 138 49 19 chr1 135590181 135590608 -61604824 - RMER10A LTR ERVL -2 440 1 2 1619 294 29 0 0 chr1 135593119 135593154 -61602278 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1619 564 289 47 93 chr1 135593157 135593247 -61602185 - B4 SINE B4 -2 290 87 2 1619 819 145 16 0 chr1 135593247 135593371 -61602061 - B1_Mus1 SINE Alu -21 127 2 2 1619 971 248 22 18 chr1 135593371 135593595 -61601837 - B4 SINE B4 -64 228 4 2 1619 688 274 28 6 chr1 135593700 135593876 -61601556 - B3A SINE B2 -18 180 1 2 1619 1620 32 0 5 chr1 135593915 135594103 -61601329 + B2_Mm2 SINE B2 2 188 -7 2 1619 1154 127 0 22 chr1 135594143 135594300 -61601132 + B2_Mm2 SINE B2 1 155 -40 2 1619 225 0 0 0 chr1 135594300 135594325 -61601107 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2 1619 1154 127 0 22 chr1 135594325 135594352 -61601080 + B2_Mm2 SINE B2 156 181 -14 2 1619 855 224 23 11 chr1 135594353 135594529 -61600903 + B3 SINE B2 39 216 0 2 1619 366 294 0 0 chr1 135594552 135594644 -61600788 - B1F SINE Alu -6 143 52 2 1619 1195 200 0 19 chr1 135595074 135595288 -61600144 + URR1B DNA MER1_type 1 210 -15 2 1619 1413 66 27 11 chr1 135595652 135595836 -61599596 - B2_Mm2 SINE B2 -8 187 1 2 1619 813 177 50 0 chr1 135595840 135595981 -61599451 - B1_Mur3 SINE Alu 0 149 2 2 1619 450 0 0 0 chr1 135596414 135596464 -61598968 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 1619 321 144 0 72 chr1 135596478 135596547 -61598885 - B2_Mm2 SINE B2 -107 109 47 2 1619 1287 69 23 11 chr1 135596594 135596771 -61598661 - B2_Mm1t SINE B2 -14 179 1 2 1619 360 0 0 0 chr1 135596983 135597023 -61598409 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1619 315 0 0 0 chr1 135597023 135597057 -61598375 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1619 825 155 166 6 chr1 135597304 135597479 -61597953 + B3 SINE B2 3 205 -11 2 1619 234 0 0 0 chr1 135597479 135597505 -61597927 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1619 901 158 203 0 chr1 135597515 135597692 -61597740 + B3 SINE B2 4 216 0 2 1619 954 137 217 0 chr1 135597719 135597894 -61597538 + B3 SINE B2 1 213 -3 2 1619 229 26 0 50 chr1 135597925 135597965 -61597467 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 2 1619 783 128 95 8 chr1 135597965 135598086 -61597346 - B1_Mur4 SINE Alu -9 141 9 2 1619 1176 84 6 11 chr1 135598247 135598428 -61597004 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1619 630 39 0 0 chr1 135598428 135598505 -61596927 + (TCC)n Simple_repeat Simple_repeat 3 79 0 2 1619 1394 86 16 11 chr1 135598508 135598697 -61596735 - B2_Mm2 SINE B2 -4 191 2 2 1619 228 176 57 38 chr1 135601053 135601106 -61594326 + MamRep605 Unknown Unknown 819 872 -4 2 1619 198 0 0 0 chr1 135602731 135602753 -61592679 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1619 222 37 0 0 chr1 135605686 135605713 -61589719 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1619 1229 48 0 0 chr1 135606760 135606907 -61588525 + B1_Mus2 SINE Alu 1 147 0 2 1619 260 186 68 0 chr1 135607474 135607533 -61587899 - PB1D10 SINE Alu -42 75 13 2 1619 203 167 0 0 chr1 135607776 135607818 -61587614 + G-rich Low_complexity Low_complexity 1 42 0 2 1619 215 260 38 25 chr1 135607864 135607943 -61587489 + (CAAAG)n Simple_repeat Simple_repeat 4 83 0 2 1619 198 0 0 0 chr1 135608818 135608840 -61586592 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1619 451 232 71 0 chr1 135609986 135610085 -61585347 - PB1D10 SINE Alu 0 117 12 2 1619 222 229 0 16 chr1 135610314 135610376 -61585056 + A-rich Low_complexity Low_complexity 2 62 0 2 1619 207 0 0 0 chr1 135610487 135610510 -61584922 + (TGGGGG)n Simple_repeat Simple_repeat 6 28 0 2 1619 229 299 53 11 chr1 135612531 135612640 -61582792 - MIR SINE MIR -152 116 1 2 1619 216 0 0 0 chr1 135613499 135613523 -61581909 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1619 420 328 7 50 chr1 135613540 135613681 -61581751 - B3A SINE B2 -16 182 48 2 1619 216 0 0 0 chr1 135614782 135614806 -61580626 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1619 988 187 110 0 chr1 135614806 135614988 -61580444 - B3 SINE B2 -14 202 1 2 1619 200 318 47 12 chr1 135615605 135615691 -61579741 + MIRb SINE MIR 143 231 -37 2 1619 225 0 0 0 chr1 135615692 135615717 -61579715 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1619 372 244 128 0 chr1 135616309 135616395 -61579037 - ID_B1 SINE B4 -16 208 112 2 1619 234 310 113 0 chr1 135616338 135616409 -61579023 - 4.5SRNA scRNA scRNA -9 85 7 2 1619 857 268 26 26 chr1 135616496 135616691 -61578741 - B3A SINE B2 -3 195 1 2 1619 1135 74 0 26 chr1 135616828 135616981 -61578451 + B1_Mur4 SINE Alu 2 150 0 2 1619 968 205 80 5 chr1 135617341 135617542 -61577890 - B3 SINE B2 0 216 1 2 1619 1096 73 0 57 chr1 135617574 135617733 -61577699 - B1_Mur4 SINE Alu 0 150 1 2 1619 1017 204 49 10 chr1 135617766 135617969 -61577463 - B3 SINE B2 -5 211 1 2 1619 21 0 0 0 chr1 135617969 135617990 -61577442 + AT_rich Low_complexity Low_complexity 1 21 0 2 1619 578 242 82 15 chr1 135618116 135618250 -61577182 + B1F SINE Alu 7 149 0 2 1619 1742 11 0 0 chr1 135618680 135618871 -61576561 + B2_Mm1a SINE B2 2 192 -1 2 1619 782 142 14 56 chr1 135618890 135619032 -61576400 + B1_Mus1 SINE Alu 1 136 -12 2 1619 306 0 0 0 chr1 135619032 135619066 -61576366 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 2 1619 240 303 34 14 chr1 135619100 135619247 -61576185 + L1MC5 LINE L1 6875 7024 -1018 2 1619 287 208 125 0 chr1 135619283 135619355 -61576077 + ID4_ SINE ID 2 82 -1 2 1619 305 316 52 9 chr1 135619437 135619552 -61575880 + L1MC5 LINE L1 7031 7150 -811 2 1619 389 279 8 90 chr1 135619629 135619751 -61575681 + PB1D7 SINE Alu 1 112 -8 2 1619 262 240 220 83 chr1 135619787 135619810 -61575622 + ID_B1 SINE B4 70 219 -5 2 1619 398 189 266 28 chr1 135619810 135619919 -61575513 + B1_Mur1 SINE Alu 10 144 -5 2 1619 416 331 8 62 chr1 135619917 135620046 -61575386 + RSINE1 SINE B4 30 151 -14 2 1619 787 10 20 0 chr1 135620050 135620150 -61575282 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1619 784 296 140 64 chr1 135620400 135620520 -61574912 + MER68 LTR ERVL 17 149 -414 2 1619 479 236 29 198 chr1 135620520 135620763 -61574669 + RMER30 DNA MER1_type 1 202 0 2 1619 784 296 140 64 chr1 135620763 135621141 -61574291 + MER68 LTR ERVL 150 553 -10 2 1619 317 276 41 57 chr1 135621160 135621283 -61574149 - MER5A DNA MER1_type -40 149 29 3 1619 947 240 34 0 chr1 135621303 135621507 -61573925 - B3 SINE B2 0 216 6 3 1619 408 202 54 43 chr1 135621589 135621682 -61573750 - B1_Mus1 SINE Alu -55 94 1 3 1619 186 43 0 0 chr1 135621860 135621883 -61573549 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1619 519 282 19 83 chr1 135621976 135622181 -61573251 + B2_Mm2 SINE B2 1 192 -3 3 1619 647 209 44 15 chr1 135622200 135622336 -61573096 - B1F2 SINE Alu 0 149 10 3 1619 481 15 30 0 chr1 135622337 135622403 -61573029 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1619 387 0 0 0 chr1 135622403 135622445 -61572987 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1619 326 331 33 26 chr1 135623508 135623520 -61571912 - YREP_Mm Unknown Unknown -1493 319 277 3 1619 626 221 9 0 chr1 135623520 135623633 -61571799 + ID_B1 SINE B4 90 203 -21 3 1619 326 331 33 26 chr1 135623633 135623660 -61571772 - YREP_Mm Unknown Unknown -1493 276 167 3 1619 694 271 14 9 chr1 135623832 135623986 -61571446 - ID_B1 SINE B4 -67 225 74 3 1619 518 203 7 20 chr1 135623995 135624141 -61571291 + CT-rich Low_complexity Low_complexity 2 145 0 3 1619 473 169 14 0 chr1 135624148 135624219 -61571213 - ID4_ SINE ID -7 76 5 3 1619 189 0 0 0 chr1 135624838 135624859 -61570573 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1619 1281 40 0 0 chr1 135624859 135625007 -61570425 - B1_Mus1 SINE Alu 0 148 1 3 1619 186 374 17 42 chr1 135625789 135625909 -61569523 + MIRm SINE MIR 160 276 0 3 1619 347 300 91 45 chr1 135626628 135626827 -61568605 + MIR SINE MIR 36 243 -19 3 1619 1877 181 10 68 chr1 135627569 135627895 -61567537 + ORR1D1 LTR MaLR 1 304 -70 3 1619 1683 31 0 0 chr1 135627895 135628088 -61567344 - B2_Mm1a SINE B2 0 193 1 3 1619 1877 181 10 68 chr1 135628088 135628158 -61567274 + ORR1D1 LTR MaLR 305 374 0 3 1619 350 286 24 12 chr1 135629329 135629414 -61566018 + PB1D10 SINE Alu 2 87 -30 3 1619 201 306 16 16 chr1 135630104 135630167 -61565265 - MIRb SINE MIR -89 179 117 3 1619 242 225 261 33 chr1 135630181 135630273 -61565159 - MER81 DNA AcHobo -1 113 1 3 1619 369 0 0 0 chr1 135630509 135630550 -61564882 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1619 299 262 12 36 chr1 135630827 135630910 -61564522 + MER3 DNA MER1_type 15 95 -114 3 1619 928 221 19 29 chr1 135634213 135634418 -61561014 - B3 SINE B2 -13 203 1 3 1619 267 220 33 17 chr1 135635425 135635485 -61559947 + ID2 SINE ID 17 77 -6 3 1619 501 303 0 68 chr1 135636773 135636950 -61558482 - B3A SINE B2 0 198 34 3 1619 546 23 112 22 chr1 135637160 135637439 -61557993 + (CAGG)n Simple_repeat Simple_repeat 1 304 0 3 1619 246 32 0 0 chr1 135637626 135637657 -61557775 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1619 485 242 153 0 chr1 135639591 135639715 -61555717 + B1F SINE Alu 1 143 -6 3 1619 212 316 136 43 chr1 135639880 135640115 -61555317 + L2 LINE L2 2824 3080 -339 3 1619 256 356 54 7 chr1 135640401 135640548 -61554884 - MIRb SINE MIR -3 265 112 3 1619 519 273 0 18 chr1 135641062 135641174 -61554258 - RSINE1 SINE B4 -54 111 2 3 1619 229 212 45 0 chr1 135642171 135642237 -61553195 + ID4 SINE ID 2 70 -13 3 1619 1155 237 0 0 chr1 135642851 135643075 -61552357 + ID_B1 SINE B4 1 224 0 3 1619 1042 215 5 32 chr1 135643080 135643296 -61552136 + B3 SINE B2 1 210 -6 3 1619 303 273 52 0 chr1 135643341 135643418 -61552014 + B1F2 SINE Alu 1 81 -68 3 1619 468 0 0 0 chr1 135644461 135644513 -61550919 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1619 236 208 75 0 chr1 135644539 135644592 -61550840 + Charlie7 DNA MER1_type 50 106 -2506 3 1619 242 228 35 0 chr1 135644747 135644804 -61550628 + ID4 SINE ID 15 73 -10 3 1619 210 250 105 0 chr1 135644804 135644823 -61550609 + ID_B1 SINE B4 15 98 -126 3 1619 275 322 40 29 chr1 135645209 135645391 -61550041 + L2c LINE L2 3150 3317 -70 3 1619 320 164 35 71 chr1 135646123 135646208 -61549224 + Lx8 LINE L1 7149 7230 -243 3 1619 238 293 17 0 chr1 135646247 135646305 -61549127 + RMER15 LTR ERVL 403 461 -114 3 1619 180 0 0 0 chr1 135646395 135646415 -61549017 + (AGGGGG)n Simple_repeat Simple_repeat 4 23 0 3 1619 672 197 184 6 chr1 135646686 135646865 -61548567 + B3 SINE B2 1 211 -5 3 1619 664 243 90 28 chr1 135647152 135647330 -61548102 + B3A SINE B2 2 190 -8 3 1619 424 270 45 9 chr1 135648282 135648394 -61547038 + PB1D7 SINE Alu 4 119 -1 3 1619 381 289 8 34 chr1 135648410 135648528 -61546904 + PB1D7 SINE Alu 5 119 -1 3 1619 227 250 0 67 chr1 135649002 135649062 -61546370 + PB1D10 SINE Alu 62 117 0 3 1619 369 0 0 0 chr1 135651429 135651470 -61543962 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1619 309 242 92 77 chr1 135651823 135651953 -61543479 + Tigger7 DNA MER2_type 2259 2390 -101 3 1619 1036 222 23 9 chr1 135651992 135652206 -61543226 - B4 SINE B4 -75 217 1 3 1619 299 229 79 157 chr1 135652206 135652232 -61543200 + Tigger7 DNA MER2_type 2346 2362 -129 3 1619 411 299 0 9 chr1 135652232 135652340 -61543092 + PB1D10 SINE Alu 4 110 -7 3 1619 299 229 79 157 chr1 135652340 135652449 -61542983 + Tigger7 DNA MER2_type 2363 2470 -21 3 1619 1147 77 24 0 chr1 135652611 135652781 -61542651 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 3 1619 800 145 21 35 chr1 135652786 135652929 -61542503 - B1_Mus1 SINE Alu 0 148 8 3 1619 858 208 113 10 chr1 135652946 135653140 -61542292 - B3 SINE B2 0 216 3 3 1619 481 289 0 104 chr1 135653140 135653275 -61542157 - B1F SINE Alu -27 122 2 3 1619 280 233 0 77 chr1 135653221 135653286 -61542146 - B4A SINE B4 -152 140 81 3 1619 312 301 52 22 chr1 135653286 135653422 -61542010 + L2a LINE L2 3283 3422 -4 3 1619 180 0 0 0 chr1 135655071 135655091 -61540341 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 3 1619 607 276 87 15 chr1 135655893 135656099 -61539333 + ID_B1 SINE B4 3 223 -1 3 1619 586 295 32 6 chr1 135656103 135656260 -61539172 + RSINE1 SINE B4 4 164 -1 3 1619 249 337 52 10 chr1 135656361 135656457 -61538975 + B1F2 SINE Alu 29 128 -21 3 1619 1137 73 0 0 chr1 135656465 135656602 -61538830 + B1_Mus2 SINE Alu 2 138 -9 3 1619 351 0 0 0 chr1 135656602 135656641 -61538791 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1619 1059 112 0 0 chr1 135657083 135657244 -61538188 + (GGA)n Simple_repeat Simple_repeat 3 163 0 3 1619 244 298 52 30 chr1 135657371 135657506 -61537926 + L1M5 LINE L1 5600 5737 -457 3 1619 204 40 0 0 chr1 135657761 135657786 -61537646 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1619 295 258 140 43 chr1 135658558 135658651 -61536781 + PB1D10 SINE Alu 1 102 -15 3 1619 351 0 0 0 chr1 135658654 135658693 -61536739 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1619 180 77 0 0 chr1 135658847 135658873 -61536559 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 1619 971 154 0 0 chr1 135658916 135659059 -61536373 - B1_Mus1 SINE Alu -5 143 1 3 1620 1196 56 7 0 chr1 135660181 135660325 -61535107 + B1_Mm SINE Alu 3 147 0 3 1620 294 29 0 0 chr1 135660476 135660511 -61534921 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1620 231 197 153 14 chr1 135660629 135660701 -61534731 - L1MC4 LINE L1 -1301 6741 6660 3 1620 291 54 0 0 chr1 135660805 135660842 -61534590 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 3 1620 255 125 0 0 chr1 135660934 135660974 -61534458 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1620 327 0 95 0 chr1 135661137 135661200 -61534232 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1620 468 0 0 0 chr1 135662102 135662154 -61533278 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1620 871 185 142 80 chr1 135665115 135665221 -61530211 + URR1B DNA MER1_type 1 100 -125 3 1620 1255 34 0 7 chr1 135665221 135665369 -61530063 - B1_Mm SINE Alu 0 147 1 3 1620 871 185 142 80 chr1 135665369 135665474 -61529958 + URR1B DNA MER1_type 101 225 0 3 1620 366 236 49 36 chr1 135666306 135666399 -61529033 + PB1D10 SINE Alu 35 129 -18 3 1620 2932 101 23 5 chr1 135666399 135666838 -61528594 - Lx4A LINE L1 -460 6598 6152 3 1620 2413 144 0 54 chr1 135666839 135667249 -61528183 + Lx4A LINE L1 6670 7057 -1 3 1620 319 241 69 69 chr1 135668178 135668294 -61527138 + PB1D10 SINE Alu 1 116 -1 3 1620 299 273 15 0 chr1 135668304 135668370 -61527062 + ID4 SINE ID 7 73 -10 3 1620 402 191 355 0 chr1 135669021 135669131 -61526301 + B1_Mur2 SINE Alu 1 149 0 3 1620 252 0 0 0 chr1 135669134 135669162 -61526270 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1620 676 234 120 21 chr1 135669354 135669638 -61525794 + L1MB3 LINE L1 5790 6101 -82 3 1620 198 336 79 9 chr1 135670397 135670511 -61524921 + MIR SINE MIR 6 127 -135 3 1620 486 0 0 0 chr1 135670520 135670574 -61524858 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1620 327 306 0 0 chr1 135670631 135670703 -61524729 - tRNA-Ala-GCA tRNA tRNA -3 72 1 3 1620 816 11 0 0 chr1 135670807 135670900 -61524532 + (GGGAA)n Simple_repeat Simple_repeat 2 94 0 3 1620 533 237 241 29 chr1 135671389 135671417 -61524015 - B3 SINE B2 -5 211 184 3 1620 354 45 0 0 chr1 135671417 135671461 -61523971 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1620 533 237 241 29 chr1 135671461 135671606 -61523826 - B3 SINE B2 -33 183 1 3 1620 884 55 0 0 chr1 135671627 135671737 -61523695 - B1_Mus1 SINE Alu 0 148 39 3 1620 392 165 74 25 chr1 135671670 135671751 -61523681 - RLTR25B LTR ERVK -519 509 425 3 1620 446 241 164 21 chr1 135671842 135671982 -61523450 - RSINE1 SINE B4 -1 164 5 3 1620 423 297 90 59 chr1 135672015 135672405 -61523027 - L1MEe LINE L1 -4248 606 205 3 1620 628 160 74 16 chr1 135672437 135672558 -61522874 + B1_Mm SINE Alu 1 128 -19 3 1620 595 308 65 5 chr1 135672678 135672877 -61522555 + MER58A DNA MER1_type 6 216 -8 4 1620 466 258 11 0 chr1 135673135 135673228 -61522204 + B1F SINE Alu 5 98 -51 4 1620 682 152 53 9 chr1 135673249 135673362 -61522070 + PB1D9 SINE Alu 3 120 0 4 1620 211 54 54 0 chr1 135673658 135673695 -61521737 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1620 180 0 0 0 chr1 135674954 135674974 -61520458 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1620 202 246 155 64 chr1 135675089 135675233 -61520199 - MIRb SINE MIR -134 142 1 4 1620 2047 114 30 68 chr1 135675966 135676305 -61519127 + ORR1A3 LTR MaLR 1 326 0 4 1620 418 304 9 26 chr1 135677067 135677182 -61518250 + PB1 SINE Alu 3 115 -12 4 1620 280 187 147 43 chr1 135678117 135678237 -61517195 + PB1D10 SINE Alu 20 131 -18 4 1620 621 252 7 13 chr1 135678844 135678993 -61516439 + B1F SINE Alu 1 148 -1 4 1620 443 348 43 39 chr1 135679190 135679444 -61515988 - MER102c DNA MER1_type 0 331 77 4 1620 182 329 47 0 chr1 135679500 135679585 -61515847 - MIR3 SINE MIR -12 196 108 4 1620 1727 239 89 9 chr1 135679675 135680101 -61515331 + RCHARR1 DNA MER1_type 4 463 -511 4 1620 317 234 93 48 chr1 135680092 135680191 -61515241 - B1_Mur2 SINE Alu 0 149 46 4 1620 634 232 43 0 chr1 135680256 135680394 -61515038 + RSINE1 SINE B4 3 146 -19 4 1620 199 255 21 21 chr1 135680399 135680447 -61514985 + L2c LINE L2 3324 3371 -16 4 1620 1994 218 18 11 chr1 135680449 135680898 -61514534 + RCHARR1 DNA MER1_type 522 973 -1 4 1620 187 352 0 0 chr1 135681126 135681180 -61514252 - L2c LINE L2 -53 3334 3281 4 1620 955 165 11 11 chr1 135681984 135682162 -61513270 + URR1A DNA MER1_type 49 226 0 4 1620 320 287 31 31 chr1 135682162 135682195 -61513237 - CYRA11_Mm Unknown Y-chromosome -446 171 139 4 1620 251 329 12 12 chr1 135682798 135682878 -61512554 - ID2 SINE ID -2 81 2 4 1620 294 254 27 53 chr1 135682975 135683050 -61512382 + ID4 SINE ID 2 74 -9 4 1620 195 411 0 11 chr1 135683129 135683220 -61512212 + MIRb SINE MIR 20 109 -159 4 1620 190 297 58 75 chr1 135684448 135684568 -61510864 + L2c LINE L2 3258 3387 0 4 1620 222 331 91 48 chr1 135685155 135685324 -61510108 + MIRc SINE MIR 3 179 -89 4 1620 409 232 119 8 chr1 135685797 135685923 -61509509 + B1F SINE Alu 1 140 -9 4 1620 472 335 54 64 chr1 135685943 135686026 -61509406 + ID SINE ID 1 81 -143 4 1620 562 284 0 7 chr1 135686026 135686161 -61509271 + B1F1 SINE Alu 4 137 -12 4 1620 310 195 39 13 chr1 135686516 135686594 -61508838 - MADE2 DNA Mariner 0 80 1 4 1620 1991 162 34 29 chr1 135686698 135687080 -61508352 + ORR1C2 LTR MaLR 1 384 0 4 1620 189 272 217 0 chr1 135687302 135687394 -61508038 - MIRm SINE MIR -149 127 16 4 1620 2080 157 71 40 chr1 135687697 135687925 -61507507 - ORR1B1 LTR MaLR -3 391 154 4 1620 303 93 0 0 chr1 135687925 135687968 -61507464 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1620 2080 157 71 40 chr1 135687968 135688118 -61507314 - ORR1B1 LTR MaLR -241 153 2 4 1620 368 111 16 0 chr1 135688527 135688590 -61506842 + (GGA)n Simple_repeat Simple_repeat 3 66 0 4 1620 222 91 0 0 chr1 135688596 135688629 -61506803 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 1620 321 249 209 32 chr1 135688801 135688988 -61506444 - L1MC4 LINE L1 -128 7914 7695 4 1620 915 273 0 5 chr1 135689029 135689239 -61506193 + B3 SINE B2 1 209 -7 4 1620 661 244 31 43 chr1 135689277 135689440 -61505992 + RSINE1 SINE B4 3 163 -2 4 1620 27 29 0 0 chr1 135689445 135689479 -61505953 + AT_rich Low_complexity Low_complexity 1 34 0 4 1620 444 304 63 40 chr1 135689587 135689762 -61505670 - B3A SINE B2 -16 182 4 4 1620 417 295 159 47 chr1 135690253 135690528 -61504904 + MLT1A0 LTR MaLR 1 306 -59 4 1620 820 226 119 11 chr1 135690656 135690930 -61504502 + L1MA7 LINE L1 5986 6286 -5 4 1620 746 214 64 0 chr1 135690942 135691082 -61504350 + B1_Mur1 SINE Alu 1 149 0 4 1620 334 274 0 56 chr1 135691101 135691129 -61504303 - PB1D10 SINE Alu -33 84 57 4 1620 1984 176 50 3 chr1 135691129 135691489 -61503943 + ORR1C1 LTR MaLR 2 378 0 4 1620 334 274 0 56 chr1 135691489 135691549 -61503883 - PB1D10 SINE Alu -61 56 2 4 1620 319 280 0 39 chr1 135691582 135691660 -61503772 - ID4_ SINE ID -1 82 8 4 1620 264 214 13 67 chr1 135691676 135691751 -61503681 - PB1D10 SINE Alu -5 112 42 4 1620 214 298 0 0 chr1 135691818 135691865 -61503567 + RSINE1 SINE B4 2 48 -117 4 1620 261 83 0 0 chr1 135692251 135692287 -61503145 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1620 528 272 0 0 chr1 135692294 135692408 -61503024 - PB1D7 SINE Alu -6 114 1 4 1620 231 294 44 0 chr1 135692531 135692599 -61502833 - L1MC LINE L1 -2271 5611 5541 4 1620 230 264 0 54 chr1 135693214 135693270 -61502162 + tRNA-Ala-GCY tRNA tRNA 11 63 -13 4 1620 359 172 0 0 chr1 135693225 135693283 -61502149 + ID4 SINE ID 24 81 -2 4 1620 342 242 37 43 chr1 135693283 135693338 -61502094 + ID_B1 SINE B4 25 132 -160 4 1620 1038 250 100 50 chr1 135693342 135693843 -61501589 + L1MA6 LINE L1 5653 6178 -122 4 1620 381 260 87 24 chr1 135694747 135694873 -61500559 + RSINE1 SINE B4 1 134 -31 4 1620 249 283 48 35 chr1 135694913 135695041 -61500391 - L2a LINE L2 -5 3421 3233 4 1620 397 268 89 55 chr1 135698236 135698382 -61497050 - MIRb SINE MIR -108 160 10 4 1620 535 282 34 27 chr1 135698745 135698891 -61496541 + B1F1 SINE Alu 1 147 -2 4 1620 234 229 0 0 chr1 135699044 135699114 -61496318 + CT-rich Low_complexity Low_complexity 3 72 0 4 1620 1193 122 16 11 chr1 135699123 135699306 -61496126 - B2_Mm2 SINE B2 -3 192 9 4 1620 198 0 0 0 chr1 135699306 135699328 -61496104 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 4 1620 519 261 113 2 chr1 135699360 135699497 -61495935 - ID_B1 SINE B4 -62 230 82 4 1620 1059 82 0 0 chr1 135700912 135701059 -61494373 + (TTC)n Simple_repeat Simple_repeat 1 147 0 4 1620 449 315 115 23 chr1 135701154 135701414 -61494018 - B4A SINE B4 -8 284 1 4 1620 707 219 57 25 chr1 135701555 135701714 -61493718 - RSINE1 SINE B4 0 165 2 4 1620 536 0 16 0 chr1 135701743 135701807 -61493625 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1620 355 286 75 19 chr1 135701956 135702063 -61493369 + B1F2 SINE Alu 37 149 0 4 1620 408 182 0 25 chr1 135702677 135702756 -61492676 + MER57A-int LTR ERV1 5820 5896 -291 4 1620 678 58 0 0 chr1 135702807 135702894 -61492538 + (GGGAGA)n Simple_repeat Simple_repeat 3 89 0 4 1620 529 178 19 19 chr1 135702922 135703025 -61492407 + ID_B1 SINE B4 120 222 -2 4 1620 2504 155 19 21 chr1 135703105 135703527 -61491905 - MTC LTR MaLR 0 421 1 4 1620 210 71 0 0 chr1 135704010 135704038 -61491394 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 1620 285 284 0 83 chr1 135704038 135704139 -61491293 - B1F SINE Alu -25 95 2 4 1620 1274 143 36 9 chr1 135705050 135705269 -61490163 - URR1B DNA MER1_type 0 225 1 4 1620 302 352 0 0 chr1 135705632 135705740 -61489692 - PB1D10 SINE Alu -9 108 1 4 1620 339 295 76 55 chr1 135706322 135706559 -61488873 + RMER17D LTR ERVK 382 623 -266 4 1620 576 184 54 27 chr1 135706576 135706688 -61488744 + PB1D9 SINE Alu 1 115 -5 4 1620 351 313 0 0 chr1 135706879 135706978 -61488454 + PB1D10 SINE Alu 3 101 -16 4 1620 261 0 0 0 chr1 135707354 135707383 -61488049 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1620 857 116 40 0 chr1 135707643 135707816 -61487616 + CT-rich Low_complexity Low_complexity 1 180 0 4 1620 480 144 62 2 chr1 135707831 135707941 -61487491 - B1_Mus2 SINE Alu 0 120 1 4 1620 4920 48 5 16 chr1 135708074 135708091 -61487341 - L1_Mus1 LINE L1 0 6567 6559 4 1620 1386 94 5 35 chr1 135708091 135708290 -61487142 - B2_Mm1a SINE B2 0 193 1 4 1620 4920 48 5 16 chr1 135708290 135708880 -61486552 - L1_Mus1 LINE L1 -9 6558 5967 4 1620 241 365 117 25 chr1 135708933 135709130 -61486302 - L2c LINE L2 -40 3347 3133 4 1620 894 113 30 8 chr1 135709229 135709363 -61486069 + B1_Mur4 SINE Alu 1 137 -13 4 1620 242 29 29 0 chr1 135709363 135709398 -61486034 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1620 460 185 19 0 chr1 135709398 135709506 -61485926 + GA-rich Low_complexity Low_complexity 3 112 0 4 1620 291 265 44 0 chr1 135710499 135710567 -61484865 + RMER30 DNA MER1_type 12 82 -120 4 1620 468 0 0 0 chr1 135710568 135710620 -61484812 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1620 428 338 60 0 chr1 135710746 135710879 -61484553 + ID_B1 SINE B4 80 220 -4 4 1620 399 230 0 0 chr1 135711198 135711272 -61484160 + ID4_ SINE ID 2 75 -8 4 1620 436 277 119 20 chr1 135711272 135711423 -61484009 + MLT1A0 LTR MaLR 156 321 -44 4 1620 470 252 8 17 chr1 135711428 135711545 -61483887 + PB1D10 SINE Alu 1 116 -1 4 1620 564 284 16 0 chr1 135711554 135711681 -61483751 + B3 SINE B2 82 210 -6 4 1620 1435 74 16 0 chr1 135711719 135711909 -61483523 + B2_Mm2 SINE B2 1 193 -2 4 1620 228 67 0 0 chr1 135712139 135712169 -61483263 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1620 366 61 0 0 chr1 135712169 135712218 -61483214 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1620 199 263 271 21 chr1 135712218 135712358 -61483074 - MIRb SINE MIR -88 180 6 4 1620 205 323 19 75 chr1 135713584 135713691 -61481741 - MIRm SINE MIR -136 140 40 4 1620 565 273 143 5 chr1 135713735 135713952 -61481480 - MIRc SINE MIR -2 266 20 4 1620 464 196 87 0 chr1 135713957 135714049 -61481383 - PB1D7 SINE Alu -1 119 20 5 1620 185 226 19 0 chr1 135714068 135714121 -61481311 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 5 1620 457 209 8 108 chr1 135714807 135714936 -61480496 + PB1D10 SINE Alu 2 117 0 5 1620 23 33 0 0 chr1 135715005 135715035 -61480397 + AT_rich Low_complexity Low_complexity 1 30 0 5 1620 511 299 51 6 chr1 135715074 135715092 -61480340 - RSINE1 SINE B4 0 165 148 5 1620 543 31 0 0 chr1 135715092 135715157 -61480275 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1620 511 299 51 6 chr1 135715157 135715296 -61480136 - RSINE1 SINE B4 -18 147 2 5 1620 217 329 123 25 chr1 135715313 135715394 -61480038 - FAM SINE Alu -67 244 156 5 1620 475 226 58 10 chr1 135715424 135715527 -61479905 - PB1D10 SINE Alu -9 108 1 5 1620 792 264 47 77 chr1 135715596 135715895 -61479537 + B4A SINE B4 3 292 0 5 1620 636 56 0 0 chr1 135715955 135716044 -61479388 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1620 400 111 28 0 chr1 135716690 135716762 -61478670 + (GGGAGA)n Simple_repeat Simple_repeat 4 77 0 5 1620 345 216 173 67 chr1 135718851 135718955 -61476477 + PB1D7 SINE Alu 1 115 -5 5 1620 481 176 0 18 chr1 135718955 135719065 -61476367 + GA-rich Low_complexity Low_complexity 1 108 0 5 1620 2163 91 25 112 chr1 135719072 135719429 -61476003 - ORR1A3 LTR MaLR 0 326 1 5 1620 204 139 28 0 chr1 135719450 135719486 -61475946 + GA-rich Low_complexity Low_complexity 2 38 0 5 1620 277 284 130 67 chr1 135719533 135719756 -61475676 - MIRb SINE MIR -13 255 19 5 1620 265 258 0 70 chr1 135719856 135719927 -61475505 + tRNA-Ala-GCY_ tRNA tRNA 9 74 -1 5 1620 257 335 36 155 chr1 135719927 135720040 -61475392 + ID_B1 SINE B4 19 176 -48 5 1620 338 284 82 21 chr1 135719964 135720061 -61475371 + PB1D10 SINE Alu 14 116 -1 5 1620 230 308 122 24 chr1 135720062 135720308 -61475124 + L1MC4a LINE L1 5716 5985 -1897 5 1620 192 77 0 0 chr1 135720335 135720361 -61475071 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1620 356 283 43 0 chr1 135720373 135720465 -61474967 + B1F SINE Alu 32 127 -22 5 1620 279 286 0 61 chr1 135720434 135720502 -61474930 + ID_B1 SINE B4 146 211 -13 5 1620 248 0 31 0 chr1 135720502 135720534 -61474898 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 5 1620 279 286 0 61 chr1 135720534 135720547 -61474885 + ID_B1 SINE B4 212 222 -2 5 1620 201 189 0 0 chr1 135721121 135721158 -61474274 + MIRc SINE MIR 115 151 -117 5 1620 202 293 42 42 chr1 135721621 135721717 -61473715 - L2c LINE L2 0 3387 3292 5 1620 301 289 32 40 chr1 135722821 135722947 -61472485 + ID_B1 SINE B4 81 205 -19 5 1620 198 0 0 0 chr1 135722967 135722989 -61472443 + (CCA)n Simple_repeat Simple_repeat 1 22 0 5 1620 300 290 53 11 chr1 135723019 135723113 -61472319 + PB1D10 SINE Alu 2 99 -18 5 1620 609 178 152 0 chr1 135723480 135723598 -61471834 + B1_Mur4 SINE Alu 10 145 -5 5 1620 365 339 25 0 chr1 135723752 135723873 -61471559 + PB1 SINE Alu 2 125 -2 5 1620 353 283 35 62 chr1 135723882 135723995 -61471437 - B1F2 SINE Alu -32 117 8 5 1620 348 64 0 0 chr1 135724152 135724199 -61471233 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1620 180 0 0 0 chr1 135724201 135724221 -61471211 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1620 395 257 169 0 chr1 135724230 135724366 -61471066 - RSINE1 SINE B4 -4 161 3 5 1620 872 256 39 0 chr1 135724397 135724604 -61470828 + B3 SINE B2 1 215 -1 5 1620 423 0 0 0 chr1 135726773 135726820 -61468612 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 5 1620 298 268 109 40 chr1 135726827 135726913 -61468519 - ID_B1 SINE B4 -8 216 124 5 1620 411 174 0 0 chr1 135726913 135726982 -61468450 + ORR1B1 LTR MaLR 1 69 -325 5 1620 848 109 16 8 chr1 135726980 135727109 -61468323 + ORR1B1 LTR MaLR 262 391 -3 5 1620 309 233 95 14 chr1 135727123 135727197 -61468235 - ID4_ SINE ID -2 81 2 5 1620 473 274 44 0 chr1 135727200 135727313 -61468119 - PB1D7 SINE Alu 0 120 3 5 1620 461 324 0 0 chr1 135727362 135727472 -61467960 + B1F SINE Alu 5 114 -35 5 1620 245 229 95 32 chr1 135727472 135727535 -61467897 + B3A SINE B2 1 67 -131 5 1620 399 244 0 0 chr1 135727542 135727620 -61467812 - ID4 SINE ID 0 83 6 5 1620 441 240 56 74 chr1 135727624 135727732 -61467700 + B3A SINE B2 50 155 -43 5 1620 307 277 0 12 chr1 135727953 135728037 -61467395 + CT-rich Low_complexity Low_complexity 4 86 0 5 1620 468 51 0 0 chr1 135728895 135728954 -61466478 + (GGA)n Simple_repeat Simple_repeat 2 60 0 5 1620 303 214 0 0 chr1 135729024 135729094 -61466338 + CT-rich Low_complexity Low_complexity 3 72 0 5 1620 329 255 0 66 chr1 135729101 135729234 -61466198 - ID4 SINE ID -22 130 11 5 1620 24 0 0 0 chr1 135729643 135729667 -61465765 + GC_rich Low_complexity Low_complexity 1 24 0 5 1620 1920 187 106 0 chr1 135730368 135730737 -61464695 - MTD LTR MaLR -11 408 1 5 1620 363 44 0 0 chr1 135731379 135731424 -61464008 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 5 1620 507 246 27 0 chr1 135731427 135731537 -61463895 - PB1D7 SINE Alu -7 113 1 5 1620 28 0 0 0 chr1 135732181 135732209 -61463223 + AT_rich Low_complexity Low_complexity 1 28 0 5 1620 225 65 0 0 chr1 135732241 135732272 -61463160 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1620 584 130 41 0 chr1 135732275 135732398 -61463034 + G-rich Low_complexity Low_complexity 6 133 0 5 1620 439 301 39 71 chr1 135732398 135732552 -61462880 - RSINE1 SINE B4 -15 150 2 5 1620 369 220 77 30 chr1 135732713 135732787 -61462645 + PB1 SINE Alu 8 89 -38 5 1620 2155 144 73 3 chr1 135732787 135733155 -61462277 - ORR1B1 LTR MaLR 0 394 1 5 1620 369 206 90 30 chr1 135733155 135733194 -61462238 + PB1 SINE Alu 90 127 0 5 1620 797 161 27 7 chr1 135733282 135733461 -61461971 - B3 SINE B2 -7 188 2 5 1620 3244 212 164 18 chr1 135733552 135734042 -61461390 + Lx9 LINE L1 6407 6944 -700 5 1620 1492 74 5 0 chr1 135734042 135734231 -61461201 - B2_Mm2 SINE B2 -5 190 1 5 1620 3244 212 164 18 chr1 135734231 135734668 -61460764 + Lx9 LINE L1 6945 7473 -171 5 1620 363 44 0 0 chr1 135734668 135734713 -61460719 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1620 3244 212 164 18 chr1 135734713 135734726 -61460706 + Lx9 LINE L1 7474 7485 -159 5 1620 201 39 0 0 chr1 135734954 135734980 -61460452 + (TTGTG)n Simple_repeat Simple_repeat 4 29 0 5 1620 617 203 97 8 chr1 135734984 135735118 -61460314 - B1_Mur1 SINE Alu 0 149 4 5 1620 687 158 0 0 chr1 135735118 135735232 -61460200 + ORR1C1 LTR MaLR 3 116 -262 5 1620 1532 58 0 5 chr1 135735238 135735428 -61460004 + B2_Mm2 SINE B2 3 191 -4 5 1620 534 47 23 23 chr1 135735430 135735517 -61459915 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 5 1620 407 137 39 60 chr1 135735517 135735626 -61459806 + ORR1C1 LTR MaLR 77 179 -195 5 1620 1554 48 16 0 chr1 135735939 135736126 -61459306 - B2_Mm2 SINE B2 -5 190 1 5 1620 351 0 0 0 chr1 135736394 135736433 -61458999 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1620 185 278 36 18 chr1 135736627 135736682 -61458750 + MIRm SINE MIR 185 240 -36 5 1620 31 0 0 0 chr1 135737737 135737768 -61457664 + AT_rich Low_complexity Low_complexity 1 31 0 5 1620 681 262 0 14 chr1 135737769 135737916 -61457516 - B1_Mur2 SINE Alu -1 148 4 5 1620 497 329 78 9 chr1 135738096 135738314 -61457118 + B4A SINE B4 60 292 0 5 1620 279 0 0 0 chr1 135738354 135738385 -61457047 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1620 402 21 0 0 chr1 135738894 135738941 -61456491 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1620 1784 209 73 11 chr1 135740546 135740918 -61454514 + MTD LTR MaLR 22 416 -3 5 1620 207 100 0 0 chr1 135741004 135741034 -61454398 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1620 185 268 78 58 chr1 135741076 135741179 -61454253 - L3b LINE CR1 -183 299 195 5 1620 382 298 96 9 chr1 135742224 135742339 -61453093 - MTE-int LTR MaLR -45 1535 1411 5 1620 735 173 24 0 chr1 135742344 135742471 -61452961 + B1_Mur3 SINE Alu 11 140 -9 5 1620 378 0 0 0 chr1 135742472 135742514 -61452918 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5 1620 364 250 32 21 chr1 135742516 135742610 -61452822 - MTE-int LTR MaLR -158 1422 1328 5 1620 688 260 58 19 chr1 135742700 135742908 -61452524 - B4A SINE B4 -75 217 2 5 1620 1095 282 136 34 chr1 135742908 135743349 -61452083 - MTE-int LTR MaLR -266 1314 829 5 1620 1381 202 98 28 chr1 135743515 135743841 -61451591 + ORR1E LTR MaLR 1 349 -10 5 1620 261 0 0 0 chr1 135743988 135744017 -61451415 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1620 1733 203 6 18 chr1 135744017 135744353 -61451079 - ORR1A1 LTR MaLR -14 332 1 5 1620 646 95 324 0 chr1 135744446 135744551 -61450881 - B1_Mus2 SINE Alu -8 139 1 5 1620 970 177 37 5 chr1 135744557 135744744 -61450688 - B2_Mm2 SINE B2 -1 194 2 5 1620 984 295 142 15 chr1 135744762 135745155 -61450277 - MTE-int LTR MaLR -1134 446 4 5 1620 2120 153 16 44 chr1 135745154 135745184 -61450248 + ORR1C1 LTR MaLR 1 28 -350 5 1620 1448 74 11 0 chr1 135745184 135745374 -61450058 + B2_Mm1t SINE B2 2 193 0 5 1620 2120 153 16 44 chr1 135745374 135745706 -61449726 + ORR1C1 LTR MaLR 29 353 -25 5 1620 415 295 26 9 chr1 135745719 135745832 -61449600 - PB1D7 SINE Alu -5 115 1 5 1620 342 343 83 64 chr1 135745851 135746116 -61449316 + ORR1E LTR MaLR 37 306 -53 5 1620 359 250 74 0 chr1 135746131 135746239 -61449193 + PB1D10 SINE Alu 1 116 -1 5 1620 585 291 34 22 chr1 135746270 135746449 -61448983 + ID_B1 SINE B4 44 224 0 5 1620 1722 209 129 5 chr1 135747196 135747567 -61447865 - MTD LTR MaLR 0 419 3 5 1620 751 127 24 0 chr1 135747569 135747695 -61447737 - MTD-int LTR MaLR 0 1258 1130 5 1620 2193 107 9 0 chr1 135747704 135748021 -61447411 - ORR1A4 LTR MaLR 0 329 10 5 1620 363 23 0 0 chr1 135748038 135748082 -61447350 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1620 573 224 252 0 chr1 135748104 135748251 -61447181 - B3 SINE B2 -32 184 1 5 1620 3237 204 202 44 chr1 135748257 135749207 -61446225 - MTD-int LTR MaLR -116 1142 43 5 1620 375 196 184 12 chr1 135749229 135749389 -61446043 - MTD LTR MaLR -2 417 196 5 1620 786 168 0 8 chr1 135749431 135749563 -61445869 - B1_Mus1 SINE Alu -7 141 11 5 1620 1019 227 24 14 chr1 135749563 135749773 -61445659 - MTD LTR MaLR -207 212 1 5 1620 525 198 9 19 chr1 135750077 135750185 -61445247 - PB1D10 SINE Alu -9 108 2 5 1620 221 388 22 7 chr1 135750532 135750667 -61444765 - MIR SINE MIR 0 262 126 5 1620 228 316 11 67 chr1 135750822 135750964 -61444468 - MIR SINE MIR -99 169 26 6 1620 251 28 0 27 chr1 135751645 135751682 -61443750 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1620 270 0 0 0 chr1 135751784 135751814 -61443618 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1620 233 293 0 124 chr1 135754011 135754116 -61441316 + MT2B LTR ERVL 151 242 -359 6 1620 425 256 0 0 chr1 135754029 135754115 -61441317 + PB1D7 SINE Alu 1 86 -34 6 1620 287 286 93 51 chr1 135754115 135754145 -61441287 + ID_B1 SINE B4 82 202 -22 6 1620 213 129 0 0 chr1 135754120 135754151 -61441281 - ID4_ SINE ID -42 41 11 6 1620 426 317 101 19 chr1 135754336 135754545 -61440887 + MLT1J LTR MaLR 239 464 -48 6 1620 351 65 0 0 chr1 135754575 135754621 -61440811 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 6 1620 367 233 139 0 chr1 135754621 135754707 -61440725 - PB1D10 SINE Alu -10 107 10 6 1620 409 308 37 0 chr1 135756355 135756462 -61438970 - PB1D10 SINE Alu -5 112 2 6 1620 235 284 31 93 chr1 135756383 135756480 -61438952 - MT2B2 LTR ERVL -345 239 149 6 1620 180 0 0 0 chr1 135757470 135757490 -61437942 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1620 327 49 0 0 chr1 135758012 135758053 -61437379 + (CCA)n Simple_repeat Simple_repeat 3 43 0 6 1620 477 294 28 38 chr1 135758140 135758346 -61437086 - MIRb SINE MIR -28 234 29 6 1620 718 248 0 25 chr1 135759244 135759401 -61436031 - RSINE1 SINE B4 -9 156 4 6 1620 22 56 0 0 chr1 135759408 135759444 -61435988 + AT_rich Low_complexity Low_complexity 1 36 0 6 1620 576 316 82 14 chr1 135760875 135761167 -61434265 + L1MA6 LINE L1 5680 5991 -309 6 1620 327 238 118 59 chr1 135761171 135761235 -61434197 + L1MA6 LINE L1 6136 6209 -91 6 1620 3226 69 5 2 chr1 135761235 135761641 -61433791 + MTB_Mm LTR MaLR 1 407 0 6 1620 327 238 118 59 chr1 135761641 135761728 -61433704 + L1MA6 LINE L1 6210 6296 -4 6 1620 1955 98 70 70 chr1 135761890 135762219 -61433213 + ORR1A4 LTR MaLR 1 329 0 6 1620 10502 132 24 134 chr1 135762219 135762914 -61432518 + ORR1A4-int LTR MaLR 1 645 -1318 6 1620 1130 68 14 14 chr1 135762914 135763062 -61432370 - B1_Mus1 SINE Alu 0 148 1 6 1620 10502 132 24 134 chr1 135763062 135764573 -61430859 + ORR1A4-int LTR MaLR 646 1963 0 6 1620 2088 104 32 67 chr1 135764573 135764914 -61430518 + ORR1A4 LTR MaLR 1 329 0 6 1620 674 235 8 0 chr1 135765069 135765201 -61430231 + RSINE1 SINE B4 2 134 -31 6 1620 486 46 0 0 chr1 135765207 135765272 -61430160 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1620 25 51 0 0 chr1 135765273 135765312 -61430120 + AT_rich Low_complexity Low_complexity 1 39 0 6 1620 272 197 0 84 chr1 135765327 135765410 -61430022 + B1_Mur4 SINE Alu 74 149 -1 6 1620 378 0 0 0 chr1 135765711 135765753 -61429679 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1620 946 294 17 44 chr1 135765785 135766080 -61429352 - B4A SINE B4 -4 288 2 6 1620 415 266 0 35 chr1 135766121 135766235 -61429197 + PB1D10 SINE Alu 22 127 -21 6 1620 483 223 5 0 chr1 135766444 135766545 -61428887 - PB1D10 SINE Alu -1 116 15 6 1620 951 215 69 109 chr1 135767178 135767481 -61427951 + B4A SINE B4 2 292 0 6 1620 180 288 0 0 chr1 135767481 135767554 -61427878 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1620 484 286 50 67 chr1 135767582 135767762 -61427670 + MER20 DNA MER1_type 34 210 -9 6 1620 255 297 171 0 chr1 135767956 135768067 -61427365 + Tigger13a DNA MER2_type 141 270 -501 6 1620 320 316 141 45 chr1 135768148 135768364 -61427068 + MLT1J1 LTR MaLR 4 242 -202 6 1620 437 279 79 29 chr1 135768364 135768504 -61426928 + B1F2 SINE Alu 2 148 -1 6 1620 320 316 141 45 chr1 135768504 135768529 -61426903 + MLT1J1 LTR MaLR 243 268 -176 6 1620 325 264 0 42 chr1 135768707 135768802 -61426630 + ID_B1 SINE B4 77 167 -57 6 1620 362 173 0 0 chr1 135768845 135768897 -61426535 + B4A SINE B4 45 96 -196 6 1620 1244 183 5 14 chr1 135768938 135769149 -61426283 - B3 SINE B2 -7 209 1 6 1620 537 284 28 77 chr1 135769149 135769339 -61426093 - B3A SINE B2 -2 196 6 6 1620 556 266 36 144 chr1 135769398 135769675 -61425757 - LTR37B LTR ERV1 -158 310 64 6 1620 350 243 14 0 chr1 135769732 135769802 -61425630 - ID4 SINE ID -1 82 12 6 1620 325 267 43 58 chr1 135770264 135770403 -61425029 - L2c LINE L2 -7 3380 3244 6 1620 246 333 100 0 chr1 135770551 135770671 -61424761 + MIRb SINE MIR 135 266 -2 6 1620 22 0 0 0 chr1 135770684 135770706 -61424726 + AT_rich Low_complexity Low_complexity 1 22 0 6 1620 440 251 164 12 chr1 135770735 135770900 -61424532 - MIRc SINE MIR -28 240 51 6 1620 555 314 34 72 chr1 135771034 135771375 -61424057 + ORR1E LTR MaLR 27 370 -9 6 1620 1100 118 215 0 chr1 135771789 135771975 -61423457 - URR1A DNA MER1_type 0 226 1 6 1620 467 152 116 32 chr1 135772804 135772899 -61422533 - PB1D9 SINE Alu 0 120 18 6 1620 201 215 15 44 chr1 135773119 135773187 -61422245 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1620 1060 132 0 0 chr1 135774088 135774232 -61421200 - B1_Mur4 SINE Alu -2 148 5 6 1620 244 321 51 51 chr1 135775074 135775192 -61420240 + B3A SINE B2 1 118 -80 6 1620 291 281 69 62 chr1 135775653 135775797 -61419635 + MIRm SINE MIR 94 238 -38 6 1620 257 177 320 25 chr1 135776678 135776763 -61418669 + PB1D10 SINE Alu 21 127 0 6 1620 237 33 0 0 chr1 135777051 135777081 -61418351 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1620 561 292 0 7 chr1 135777544 135777682 -61417750 + B1F SINE Alu 1 137 -12 6 1620 224 170 21 21 chr1 135777956 135778004 -61417428 + MIR SINE MIR 88 135 -127 6 1620 1041 113 266 0 chr1 135778049 135778226 -61417206 + URR1B DNA MER1_type 2 225 0 6 1620 1623 155 14 132 chr1 135782074 135782160 -61413272 - ORR1A2 LTR MaLR -1 326 271 6 1620 1230 41 7 0 chr1 135782160 135782306 -61413126 - B1_Mus1 SINE Alu 0 148 2 6 1620 1623 155 14 132 chr1 135782306 135782583 -61412849 - ORR1A2 LTR MaLR -57 270 6 6 1620 206 214 0 23 chr1 135782614 135782657 -61412775 + (CCG)n Simple_repeat Simple_repeat 2 43 0 6 1620 220 246 30 15 chr1 135784268 135784334 -61411098 - ID4 SINE ID -3 80 14 6 1620 246 254 0 0 chr1 135784399 135784454 -61410978 + ORR1E LTR MaLR 51 105 -274 6 1620 419 294 108 58 chr1 135784516 135784612 -61410820 + ORR1E LTR MaLR 76 181 -178 6 1620 270 0 0 0 chr1 135784612 135784642 -61410790 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 6 1620 419 294 108 58 chr1 135784642 135784805 -61410627 + ORR1E LTR MaLR 182 347 -12 6 1620 639 280 84 10 chr1 135784908 135785106 -61410326 + B3A SINE B2 9 216 0 6 1620 240 309 48 6 chr1 135785759 135785915 -61409517 + L2b LINE L2 2958 3116 -271 6 1620 186 71 0 0 chr1 135787632 135787660 -61407772 + (C)n Simple_repeat Simple_repeat 1 28 0 6 1620 469 248 10 0 chr1 135788704 135788805 -61406627 - ID_B1 SINE B4 -2 222 121 6 1620 556 184 9 19 chr1 135788835 135788940 -61406492 - B1_Mur1 SINE Alu -7 142 39 6 1620 259 254 141 0 chr1 135788946 135789017 -61406415 - PB1D10 SINE Alu -36 81 1 6 1620 258 273 53 112 chr1 135789191 135789360 -61406072 - LTR50 LTR ERVL -558 237 79 6 202 1356 71 0 0 chr1 135790523 135791106 -61404326 + (CA)n Simple_repeat Simple_repeat 1 583 0 6 1621 294 240 77 3 chr1 135791321 135791415 -61404017 + B4A SINE B4 3 103 -62 6 1621 1021 197 24 48 chr1 135791416 135791624 -61403808 + B3 SINE B2 3 205 -11 6 1621 750 320 14 46 chr1 135791633 135791849 -61403583 + B4A SINE B4 84 292 0 6 1621 201 39 0 0 chr1 135791926 135791952 -61403480 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1621 281 337 20 0 chr1 135792203 135792304 -61403128 + MIRc SINE MIR 96 198 -70 6 1621 436 150 152 107 chr1 135792813 135792925 -61402507 + PB1D10 SINE Alu 1 117 0 6 1621 504 0 0 0 chr1 135793389 135793445 -61401987 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1621 220 122 0 24 chr1 135793486 135793528 -61401904 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 1621 1075 292 69 22 chr1 135793534 135793898 -61401534 - MER63D DNA AcHobo -675 386 6 6 1621 281 155 0 17 chr1 135793913 135793972 -61401460 + CT-rich Low_complexity Low_complexity 2 59 0 6 1621 389 62 31 0 chr1 135794161 135794225 -61401207 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 6 1621 306 306 31 0 chr1 135795165 135795263 -61400169 - B1F SINE Alu -16 133 33 6 1621 398 225 157 0 chr1 135796121 135796210 -61399222 + PB1D10 SINE Alu 9 111 -16 6 1621 405 0 0 0 chr1 135796214 135796259 -61399173 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1621 1758 121 194 10 chr1 135796744 135797054 -61398378 + ORR1B2 LTR MaLR 1 367 0 6 1621 251 306 12 0 chr1 135799203 135799288 -61396144 + MLT1K LTR MaLR 23 108 -487 6 1621 540 292 99 78 chr1 135801008 135801290 -61394142 + B4 SINE B4 5 292 0 6 1621 705 146 0 0 chr1 135801293 135801430 -61394002 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 1621 214 151 75 0 chr1 135802212 135802265 -61393167 + A-rich Low_complexity Low_complexity 3 59 0 6 1621 1126 92 0 0 chr1 135802299 135802441 -61392991 + B1_Mm SINE Alu 2 143 -4 6 1621 450 0 0 0 chr1 135802441 135802491 -61392941 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1621 1171 211 18 0 chr1 135802515 135802733 -61392699 - ID_B1 SINE B4 -1 223 2 6 1621 342 0 0 0 chr1 135803770 135803808 -61391624 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1621 220 200 22 0 chr1 135803910 135803955 -61391477 + C-rich Low_complexity Low_complexity 2 47 0 6 1621 220 314 12 30 chr1 135805028 135805192 -61390240 + C-rich Low_complexity Low_complexity 4 164 0 6 1621 781 124 7 14 chr1 135806265 135806404 -61389028 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 6 1621 584 198 66 0 chr1 135806406 135806512 -61388920 - PB1D9 SINE Alu -7 113 1 6 1621 948 252 0 40 chr1 135806540 135806763 -61388669 + B3 SINE B2 1 214 -2 6 1621 245 265 0 0 chr1 135807005 135807054 -61388378 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1621 333 237 92 0 chr1 135809702 135809778 -61385654 - PB1D10 SINE Alu -34 83 1 6 1621 325 333 0 20 chr1 135809804 135809902 -61385530 - PB1D10 SINE Alu -20 97 2 7 1621 340 320 65 0 chr1 135809902 135809937 -61385495 - ID SINE ID -142 82 44 7 1621 251 376 36 35 chr1 135810316 135810518 -61384914 - MIRb SINE MIR -39 229 26 7 1621 976 54 139 0 chr1 135810570 135810699 -61384733 - B1_Mus1 SINE Alu 0 148 2 7 1621 438 121 273 0 chr1 135810744 135810843 -61384589 + B1_Mus1 SINE Alu 10 135 -13 7 1621 383 56 19 0 chr1 135810845 135810899 -61384533 + (GGA)n Simple_repeat Simple_repeat 2 56 0 7 1621 324 48 0 0 chr1 135812469 135812511 -61382921 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1621 477 62 0 0 chr1 135813514 135813579 -61381853 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1621 360 310 51 46 chr1 135813844 135814081 -61381351 - MamRep4096 DNA hAT? -124 302 65 7 1621 182 320 62 0 chr1 135815796 135815842 -61379590 + MIRb SINE MIR 123 170 -98 7 1621 277 278 97 0 chr1 135815842 135815914 -61379518 - ID4_ SINE ID -2 81 3 7 1621 182 320 62 0 chr1 135815914 135815964 -61379468 + MIRb SINE MIR 171 224 -44 7 1621 249 98 0 0 chr1 135816316 135816357 -61379075 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1621 369 0 0 0 chr1 135817050 135817091 -61378341 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1621 402 39 0 0 chr1 135817412 135817464 -61377968 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1621 268 268 10 58 chr1 135817991 135818094 -61377338 + G-rich Low_complexity Low_complexity 1 98 0 7 1621 242 310 67 50 chr1 135818918 135819037 -61376395 + MIRm SINE MIR 67 187 -89 7 1621 3190 185 66 82 chr1 135819170 135819987 -61375445 + RMER13B LTR ERVK 1 804 -104 7 1621 416 243 26 18 chr1 135820080 135820193 -61375239 + PB1D7 SINE Alu 7 120 0 7 1621 186 283 0 36 chr1 135820566 135820621 -61374811 + L3 LINE CR1 4431 4483 -6 7 1621 181 283 32 32 chr1 135821439 135821501 -61373931 + L2b LINE L2 3292 3353 -22 7 1621 316 287 139 0 chr1 135821854 135821962 -61373470 - PB1 SINE Alu -2 125 3 7 1621 431 212 0 110 chr1 135821998 135822107 -61373325 - RLTR20B2 LTR ERVK 0 560 465 7 1621 906 120 0 0 chr1 135822107 135822282 -61373150 + (CA)n Simple_repeat Simple_repeat 2 176 0 7 1621 431 212 0 110 chr1 135822282 135822299 -61373133 - RLTR20B2 LTR ERVK -96 464 448 7 1621 893 119 4 0 chr1 135822301 135822555 -61372877 + (CA)n Simple_repeat Simple_repeat 1 254 0 7 1621 2119 172 57 9 chr1 135822563 135823003 -61372429 - RLTR20B2 LTR ERVK -96 464 4 7 1621 4277 157 48 47 chr1 135823004 135823906 -61371526 - MYSERV16_I-int LTR ERVK 0 2326 1316 7 1621 1276 48 0 0 chr1 135823906 135824053 -61371379 - B1_Mus2 SINE Alu 0 147 1 7 1621 4277 144 45 61 chr1 135824053 135824276 -61371156 - MYSERV16_I-int LTR ERVK -1011 1315 1078 7 1621 1182 49 0 21 chr1 135824276 135824413 -61371019 + B1_Mus1 SINE Alu 2 136 -12 7 1621 201 39 0 0 chr1 135824413 135824439 -61370993 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1621 4277 144 45 61 chr1 135824446 135824505 -61370927 - MYSERV16_I-int LTR ERVK -1249 1077 1026 7 1621 2628 187 36 12 chr1 135824513 135825072 -61370360 + RLTR20B3 LTR ERVK 6 577 0 7 1621 362 318 0 9 chr1 135825074 135825182 -61370250 + CT-rich Low_complexity Low_complexity 1 107 0 7 1621 277 233 149 14 chr1 135825202 135825276 -61370156 - PB1D7 SINE Alu -6 114 31 7 1621 652 334 78 84 chr1 135825474 135826010 -61369422 + MT2A LTR ERVL 1 533 0 7 1621 490 263 8 25 chr1 135826010 135826128 -61369304 - ID_B1 SINE B4 -28 196 81 7 1621 255 300 25 12 chr1 135826733 135826814 -61368618 - MamGypLTR1c LTR Gypsy -606 197 116 7 1621 303 28 0 0 chr1 135826979 135827015 -61368417 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1621 970 267 95 29 chr1 135827828 135828102 -61367330 - B4A SINE B4 0 292 1 7 1621 180 354 82 44 chr1 135829531 135829714 -61365718 - MIR SINE MIR -50 212 23 7 1621 246 95 0 0 chr1 135830887 135830929 -61364503 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1621 872 235 6 1 chr1 135832800 135832969 -61362463 + B3A SINE B2 2 173 -43 7 1621 405 0 0 0 chr1 135832969 135833014 -61362418 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1621 892 246 27 27 chr1 135833014 135833032 -61362400 + B3 SINE B2 174 189 -27 7 1621 240 163 0 0 chr1 135834078 135834121 -61361311 + CT-rich Low_complexity Low_complexity 4 46 0 7 1621 985 130 7 0 chr1 135834148 135834294 -61361138 - B1_Mus1 SINE Alu -1 147 1 7 1621 260 229 0 16 chr1 135834558 135834620 -61360812 - L1M2 LINE L1 -659 5641 5581 7 1621 290 243 72 9 chr1 135834977 135835124 -61360308 - L1M2 LINE L1 -632 5542 5380 7 1621 2040 162 93 3 chr1 135835173 135835551 -61359881 - MTD LTR MaLR 0 419 8 7 1621 2473 241 83 114 chr1 135835565 135835727 -61359705 - MTD-int LTR MaLR -5 1253 1100 7 1621 690 172 315 12 chr1 135835727 135835892 -61359540 + B3 SINE B2 1 215 -1 7 1621 2473 241 83 114 chr1 135835892 135836636 -61358796 - MTD-int LTR MaLR -159 1099 375 7 1621 256 179 77 0 chr1 135836637 135836715 -61358717 - Lx7 LINE L1 -1 7695 7612 7 1621 222 229 11 78 chr1 135836728 135836818 -61358614 + A-rich Low_complexity Low_complexity 1 84 0 7 1621 402 121 0 0 chr1 135836819 135836885 -61358547 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1621 384 82 0 0 chr1 135836886 135836947 -61358485 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1621 312 158 0 0 chr1 135837018 135837075 -61358357 + CT-rich Low_complexity Low_complexity 4 60 0 7 1621 327 268 44 9 chr1 135837092 135837205 -61358227 - Lx7 LINE L1 -426 7270 7154 7 1621 360 295 18 0 chr1 135837217 135837329 -61358103 - Lx7 LINE L1 -589 7107 6994 7 1621 306 359 81 34 chr1 135837329 135837649 -61357783 + L2a LINE L2 3077 3411 -15 7 1621 517 314 83 23 chr1 135837769 135837987 -61357445 + MER102b DNA MER1_type 4 234 -107 7 1621 557 284 70 25 chr1 135838947 135839146 -61356286 - MIR SINE MIR -29 233 26 7 1621 207 0 0 0 chr1 135839782 135839805 -61355627 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 1621 786 154 0 37 chr1 135839808 135839943 -61355489 - B1F2 SINE Alu -7 142 13 7 1621 4817 122 53 56 chr1 135840667 135841529 -61353903 - RLTR13A3 LTR ERVK 0 978 119 7 1621 225 154 18 55 chr1 135841704 135841759 -61353673 + T-rich Low_complexity Low_complexity 2 54 0 7 1621 1424 190 155 52 chr1 135841775 135841965 -61353467 + RMER1B Other Other 298 499 -567 7 1621 366 23 0 0 chr1 135841965 135842008 -61353424 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1621 1424 190 155 52 chr1 135842008 135842301 -61353131 + RMER1B Other Other 500 831 -235 7 1621 365 183 0 0 chr1 135842308 135842379 -61353053 + RMER1B Other Other 957 1027 -39 7 1621 591 15 0 0 chr1 135842542 135842610 -61352822 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1621 189 0 0 0 chr1 135842610 135842630 -61352802 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1621 2152 109 55 0 chr1 135843130 135843442 -61351990 - ORR1A4 LTR MaLR 0 329 1 7 1621 1091 79 14 0 chr1 135843621 135843761 -61351671 + B1_Mus1 SINE Alu 2 143 -5 7 1621 326 294 52 70 chr1 135843772 135843944 -61351488 + L1M5 LINE L1 3109 3277 -2869 7 1621 508 152 0 0 chr1 135843958 135844037 -61351395 + B1_Mus1 SINE Alu 3 81 -67 7 1621 487 267 67 22 chr1 135844042 135844176 -61351256 + B1_Mur2 SINE Alu 10 149 0 7 1621 361 320 113 63 chr1 135844293 135844735 -61350697 + L1MA4A LINE L1 2574 3036 -3107 7 1621 524 292 14 0 chr1 135844735 135844879 -61350553 + B1F1 SINE Alu 3 148 -1 7 1621 361 320 113 63 chr1 135844879 135845009 -61350423 + L1MA4A LINE L1 3037 3174 -2969 7 1621 1803 296 55 30 chr1 135845084 135845215 -61350217 + L1MA4A LINE L1 3313 3450 -2693 7 1621 189 0 0 0 chr1 135845215 135845236 -61350196 + (CAA)n Simple_repeat Simple_repeat 3 23 0 7 1621 1803 296 55 30 chr1 135845236 135846021 -61349411 + L1MA4A LINE L1 3451 4251 -1892 7 1621 525 281 200 12 chr1 135846000 135846325 -61349107 + L1MA4A LINE L1 5522 5907 -396 7 1621 910 225 68 0 chr1 135846390 135846581 -61348851 + B3 SINE B2 7 210 -6 7 1621 432 0 0 0 chr1 135847063 135847111 -61348321 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1621 230 200 70 35 chr1 135847416 135847473 -61347959 + ID4 SINE ID 12 70 -13 7 1621 416 104 0 15 chr1 135847637 135847705 -61347727 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 7 1621 267 316 49 37 chr1 135847837 135848001 -61347431 - L2 LINE L2 -904 2515 2350 7 1621 507 78 0 0 chr1 135849120 135849197 -61346235 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1621 255 308 47 28 chr1 135849474 135849581 -61345851 + MamGypLTR1c LTR Gypsy 687 795 -8 7 1621 22 0 0 0 chr1 135849847 135849869 -61345563 + AT_rich Low_complexity Low_complexity 1 22 0 7 1621 1435 129 0 30 chr1 135850888 135851119 -61344313 + URR1A DNA MER1_type 3 226 0 7 1621 709 335 55 38 chr1 135852216 135852582 -61342850 - MLT1B LTR MaLR -1 389 18 7 1621 435 213 20 2 chr1 135852835 135852954 -61342478 + L1MA4 LINE L1 5802 5932 -1712 7 1621 207 0 0 0 chr1 135853055 135853078 -61342354 + (GA)n Simple_repeat Simple_repeat 1 23 0 7 1621 765 0 0 0 chr1 135853078 135853163 -61342269 + (GAA)n Simple_repeat Simple_repeat 3 87 0 7 1621 681 289 57 42 chr1 135853222 135853486 -61341946 - MLT1H1 LTR MaLR -45 510 243 7 1621 1467 62 0 35 chr1 135854342 135854444 -61340988 - B2_Mm2 SINE B2 -1 194 99 7 1621 3597 25 0 0 chr1 135854444 135854840 -61340592 + MTA_Mm LTR MaLR 1 396 0 7 1621 1467 62 0 35 chr1 135854840 135854938 -61340494 - B2_Mm2 SINE B2 -97 98 1 7 1621 450 305 131 104 chr1 135854938 135855298 -61340134 + MLT1G1 LTR MaLR 51 408 -140 7 1621 240 204 20 0 chr1 135855298 135855347 -61340085 - ID4_ SINE ID -32 51 2 7 1621 450 305 131 104 chr1 135855347 135855486 -61339946 + MLT1G1 LTR MaLR 409 548 0 7 1621 636 219 41 3 chr1 135857085 135857218 -61338214 + B3A SINE B2 5 158 -35 7 1621 554 89 11 0 chr1 135857218 135857308 -61338124 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1621 295 270 180 56 chr1 135857308 135857340 -61338092 + B2_Mm1a SINE B2 159 190 -3 7 1621 1124 54 7 0 chr1 135857764 135857912 -61337520 + (GAAA)n Simple_repeat Simple_repeat 3 151 0 7 1621 7531 68 16 20 chr1 135859161 135860005 -61335427 - L1_Mus3 LINE L1 0 6638 5798 7 1621 1238 68 0 0 chr1 135860005 135860153 -61335279 - B1_Mus1 SINE Alu 0 148 1 7 1621 7531 101 25 23 chr1 135860153 135860829 -61334603 - L1_Mus3 LINE L1 -86 5797 5099 7 1621 1176 50 0 0 chr1 135860858 135860997 -61334435 - B1_Mus2 SINE Alu -8 139 1 7 1621 241 135 0 0 chr1 135860997 135861034 -61334398 - L1_Mus3 LINE L1 -776 5107 5071 7 1621 208 321 102 19 chr1 135861579 135861758 -61333674 - MIR3 SINE MIR -21 187 2 7 1621 194 312 114 53 chr1 135862931 135863063 -61332369 - L2b LINE L2 -1 3374 3235 7 1621 253 135 20 185 chr1 135863398 135863598 -61331834 + G-rich Low_complexity Low_complexity 4 170 0 7 1621 250 326 82 31 chr1 135864064 135864162 -61331270 + MIR SINE MIR 41 143 -119 7 1621 182 395 12 0 chr1 135864362 135864443 -61330989 - L3 LINE CR1 -732 3757 3676 7 1621 1666 263 50 37 chr1 135866273 135866817 -61328615 + Lx8 LINE L1 6207 6757 -716 7 1621 288 239 29 107 chr1 135867608 135867711 -61327721 + L2c LINE L2 3274 3368 -19 7 1621 339 375 69 35 chr1 135868303 135868477 -61326955 + Charlie19a DNA Charlie 1 180 -206 7 1621 186 315 116 32 chr1 135869325 135869420 -61326012 + MIRb SINE MIR 100 202 -66 8 1621 210 309 114 6 chr1 135869721 135869887 -61325545 + L2c LINE L2 2451 2634 -785 8 1621 263 297 203 31 chr1 135870004 135870163 -61325269 + MLT1J LTR MaLR 110 284 -228 8 1621 1475 210 104 5 chr1 135870673 135871073 -61324359 + RMER1B Other Other 97 891 -175 8 1621 2160 262 17 4 chr1 135871367 135871899 -61323533 + RMER1C Other Other 683 1221 -121 8 1621 345 159 0 0 chr1 135871899 135871962 -61323470 + CT-rich Low_complexity Low_complexity 3 65 0 8 1621 484 215 15 76 chr1 135871967 135872098 -61323334 + RMER1C Other Other 1207 1329 -13 8 1621 1468 247 47 25 chr1 135872174 135872539 -61322893 + MTEb LTR MaLR 1 373 -6 8 1621 991 237 47 24 chr1 135872700 135872715 -61322717 - ID_B1 SINE B4 0 224 213 8 1621 324 0 0 0 chr1 135872715 135872751 -61322681 + (TTG)n Simple_repeat Simple_repeat 1 36 0 8 1621 991 237 47 24 chr1 135872751 135872947 -61322485 - ID_B1 SINE B4 -12 212 8 8 1621 780 68 0 0 chr1 135873120 135873223 -61322209 + (TG)n Simple_repeat Simple_repeat 2 104 0 8 1621 304 305 44 59 chr1 135873592 135873728 -61321704 + L2c LINE L2 3254 3387 0 8 1621 242 288 132 31 chr1 135874023 135874152 -61321280 + LTR85c LTR Gypsy? 131 272 -551 8 1621 285 194 88 15 chr1 135875981 135876049 -61319383 + L1MC1 LINE L1 6243 6315 -18 8 1621 358 257 37 0 chr1 135876429 135876538 -61318894 + GA-rich Low_complexity Low_complexity 6 118 0 8 1621 234 326 65 0 chr1 135877637 135877729 -61317703 + MLT1J LTR MaLR 82 179 -333 8 1621 25 0 0 0 chr1 135877774 135877799 -61317633 + AT_rich Low_complexity Low_complexity 1 25 0 8 1621 576 106 0 0 chr1 135878396 135878490 -61316942 + (CA)n Simple_repeat Simple_repeat 2 95 0 8 1621 691 284 36 5 chr1 135878561 135878602 -61316830 - Lx8 LINE L1 -123 7350 7311 8 1621 282 56 0 0 chr1 135878602 135878638 -61316794 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1621 691 284 36 5 chr1 135878638 135878791 -61316641 - Lx8 LINE L1 -163 7310 7151 8 1621 3024 272 85 10 chr1 135878807 135878905 -61316527 - Lx8 LINE L1 -406 7067 6933 8 1621 3470 30 5 0 chr1 135878905 135879299 -61316133 + MTA_Mm LTR MaLR 1 396 0 8 1621 8621 58 5 10 chr1 135879299 135880402 -61315030 + MTA_Mm-int LTR MaLR 1 1098 0 8 1621 3501 18 8 0 chr1 135880402 135880795 -61314637 + MTA_Mm LTR MaLR 1 396 0 8 1621 3024 272 85 10 chr1 135880795 135881607 -61313825 - Lx8 LINE L1 -541 6932 6088 8 1621 1626 239 77 11 chr1 135881638 135882014 -61313418 - MTD LTR MaLR 0 419 19 8 1621 1809 216 117 29 chr1 135882034 135882563 -61312869 - RLTR20B3 LTR ERVK -14 563 19 8 1621 1797 302 62 37 chr1 135882711 135883690 -61311742 - Lx8 LINE L1 -1727 5917 4873 8 1621 739 181 51 0 chr1 135883711 135883849 -61311583 + B1_Mus2 SINE Alu 2 146 -1 8 1621 216 191 0 0 chr1 135883962 135884009 -61311423 + T-rich Low_complexity Low_complexity 1 47 0 8 1621 5797 65 11 1 chr1 135884304 135885027 -61310405 + L1_Mus1 LINE L1 5838 6567 0 8 1621 308 346 0 0 chr1 135885033 135885134 -61310298 + ID_B1 SINE B4 76 176 -48 8 1621 488 245 0 0 chr1 135885051 135885149 -61310283 + PB1D10 SINE Alu 13 110 -7 8 1621 270 274 41 0 chr1 135885157 135885230 -61310202 + ID2 SINE ID 5 80 -3 8 1621 336 102 0 0 chr1 135885318 135885367 -61310065 + (TTG)n Simple_repeat Simple_repeat 3 51 0 8 1621 200 94 0 30 chr1 135885814 135885847 -61309585 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 8 1621 456 273 33 0 chr1 135886596 135886717 -61308715 + RSINE1 SINE B4 1 125 -40 8 1621 222 37 0 0 chr1 135886717 135886744 -61308688 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1621 1087 200 5 40 chr1 135886942 135887166 -61308266 + B3 SINE B2 1 216 0 8 1621 1204 142 17 11 chr1 135887292 135887470 -61307962 + B3 SINE B2 1 179 -37 8 1621 273 372 0 24 chr1 135887987 135888111 -61307321 - L2a LINE L2 -264 3162 3042 8 1621 480 272 16 53 chr1 135888479 135888614 -61306818 - PB1D7 SINE Alu -19 130 5 8 1621 637 284 65 70 chr1 135888684 135888707 -61306725 + RMER30 DNA MER1_type 2 21 -181 8 1621 2191 178 0 104 chr1 135888707 135888782 -61306650 - MTD LTR MaLR 0 419 355 8 1621 807 40 0 0 chr1 135888782 135888881 -61306551 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 8 1621 2191 178 0 104 chr1 135888881 135888922 -61306510 - MTD LTR MaLR -65 354 340 8 1621 1247 41 7 0 chr1 135888922 135889068 -61306364 - B1_Mm SINE Alu 0 147 1 8 1621 2191 178 0 104 chr1 135889068 135889413 -61306019 - MTD LTR MaLR -80 339 5 8 1621 637 284 65 70 chr1 135889413 135889590 -61305842 + RMER30 DNA MER1_type 22 201 -1 8 1621 237 269 0 0 chr1 135889592 135889659 -61305773 + L1MEf LINE L1 1113 1179 -5221 8 1621 747 257 204 16 chr1 135889664 135889909 -61305523 + B4A SINE B4 1 291 -1 8 1621 433 309 43 68 chr1 135890191 135890354 -61305078 - RSINE1 SINE B4 -2 163 5 8 1621 560 245 58 0 chr1 135890444 135890583 -61304849 + B1F1 SINE Alu 2 148 -1 8 1621 312 368 77 0 chr1 135890587 135890704 -61304728 + L1MEf LINE L1 1766 1891 -4524 8 1621 830 147 16 0 chr1 135890736 135890865 -61304567 + B1_Mur3 SINE Alu 10 140 -9 8 1621 420 71 0 0 chr1 135890865 135890921 -61304511 + (CATA)n Simple_repeat Simple_repeat 4 59 0 8 1621 1402 72 39 0 chr1 135891271 135891451 -61303981 - B2_Mm2 SINE B2 -8 187 1 8 1621 308 311 35 18 chr1 135891639 135891809 -61303623 + L1MEf LINE L1 2576 2748 -3571 8 1621 324 213 130 9 chr1 135891823 135891929 -61303503 + PB1D10 SINE Alu 1 125 -24 8 1621 305 340 32 33 chr1 135891971 135892237 -61303195 + L1MEf LINE L1 2797 3068 -3251 8 1621 1512 129 12 4 chr1 135892248 135892496 -61302936 - Lx4B LINE L1 -328 6730 6481 8 1621 410 189 192 24 chr1 135892496 135892621 -61302811 + Lx4B LINE L1 6895 7040 -18 8 1621 618 82 0 0 chr1 135892622 135892707 -61302725 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 8 1621 521 261 54 0 chr1 135892748 135892878 -61302554 + B3 SINE B2 75 211 -5 8 1621 968 196 56 15 chr1 135892897 135893094 -61302338 - B3 SINE B2 -11 205 1 8 1621 476 289 35 0 chr1 135893254 135893396 -61302036 + RSINE1 SINE B4 3 149 -16 8 1621 265 331 14 14 chr1 135893680 135893818 -61301614 + L1MEf LINE L1 4593 4730 -1586 8 1621 338 250 48 72 chr1 135893936 135894061 -61301371 + L1MD LINE L1 5314 5435 -807 8 1621 467 327 101 96 chr1 135894301 135894856 -61300576 - MLT1F2 LTR MaLR -2 558 1 8 1621 901 156 41 34 chr1 135895002 135895148 -61300284 + B1_Mur4 SINE Alu 1 147 -3 8 1621 279 0 0 0 chr1 135895658 135895689 -61299743 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 1621 7876 18 58 65 chr1 135895758 135896025 -61299407 + L1_Mm LINE L1 4157 4423 -1460 8 1621 3466 29 134 0 chr1 135896025 135896444 -61298988 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1621 7876 18 58 65 chr1 135896444 135896894 -61298538 + L1_Mm LINE L1 4424 4906 -977 8 1621 239 167 46 77 chr1 135896894 135896959 -61298473 - RMER20A LTR ERVK -268 248 186 8 1621 7876 18 58 65 chr1 135896959 135897291 -61298141 + L1_Mm LINE L1 4907 5264 -619 8 1621 2302 59 2 15 chr1 135897291 135897610 -61297822 - RLTR10-int LTR ERVK -1687 300 9 8 1621 2590 52 6 224 chr1 135897611 135898110 -61297322 - RLTR10 LTR ERVK 0 390 1 8 1621 2843 9 0 0 chr1 135898110 135898439 -61296993 + L1Md_T LINE L1 5258 5586 -297 8 1621 8754 24 2 0 chr1 135898439 135899433 -61295999 + L1Md_T LINE L1 5587 6582 0 8 1621 343 219 14 0 chr1 135899941 135900014 -61295418 + PB1D10 SINE Alu 14 87 -30 8 1621 243 0 0 0 chr1 135900026 135900053 -61295379 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1621 3338 48 5 0 chr1 135900123 135900517 -61294915 - MTA_Mm LTR MaLR 0 396 1 8 1621 307 294 114 47 chr1 135900885 135901096 -61294336 + LTR78 LTR ERV1 690 914 -390 8 1621 279 0 0 0 chr1 135901319 135901350 -61294082 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1621 776 268 38 9 chr1 135902411 135902622 -61292810 + MER63D DNA AcHobo 3 219 -842 8 1621 291 114 0 0 chr1 135903711 135903755 -61291677 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1621 677 265 77 6 chr1 135904386 135904568 -61290864 - MIR SINE MIR -62 200 6 8 1621 188 143 24 0 chr1 135904811 135904853 -61290579 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 8 1621 462 215 18 61 chr1 135905820 135905934 -61289498 - PB1D10 SINE Alu -8 109 1 8 1621 2443 78 16 3 chr1 135905993 135906316 -61289116 - ORR1A2 LTR MaLR 0 327 1 8 1621 299 314 108 13 chr1 135906614 135906686 -61288746 + L1MEd LINE L1 562 637 -5482 8 1621 683 239 258 0 chr1 135906686 135906853 -61288579 - B3 SINE B2 -5 211 2 8 1621 299 314 108 13 chr1 135906853 135906938 -61288494 + L1MEd LINE L1 638 733 -5386 8 1621 488 211 10 0 chr1 135906991 135907095 -61288337 + Lx8 LINE L1 7159 7263 -210 8 1621 378 0 0 0 chr1 135907891 135907933 -61287499 + (GGA)n Simple_repeat Simple_repeat 2 43 0 8 1621 309 261 117 0 chr1 135907936 135908047 -61287385 + Lx8 LINE L1 7037 7160 -313 8 1621 389 326 24 78 chr1 135908244 135908450 -61286982 - MLT1J2 LTR MaLR -6 442 248 8 1621 852 289 103 33 chr1 135908847 135909176 -61286256 + MTEa LTR MaLR 2 353 -26 8 1621 23 33 0 0 chr1 135909178 135909208 -61286224 + AT_rich Low_complexity Low_complexity 1 30 0 8 1621 360 0 0 0 chr1 135910849 135910889 -61284543 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 1621 576 179 0 0 chr1 135910889 135911001 -61284431 + (TG)n Simple_repeat Simple_repeat 2 113 0 8 1621 355 157 56 47 chr1 135911603 135911710 -61283722 + RLTR42-int LTR ERVK 4132 4239 -1283 8 1621 1117 63 0 0 chr1 135911932 135912074 -61283358 - B1_Mus1 SINE Alu 0 148 7 8 1621 676 184 77 49 chr1 135912153 135912275 -61283157 - B1_Mur2 SINE Alu 0 149 21 8 1621 1617 170 114 18 chr1 135912275 135912616 -61282816 + ORR1D1 LTR MaLR 1 374 0 8 1621 676 184 77 49 chr1 135912616 135912636 -61282796 - B1_Mur2 SINE Alu -129 20 3 8 1621 982 230 90 42 chr1 135912714 135913046 -61282386 + RLTR42-int LTR ERVK 4254 4601 -921 8 1621 1919 160 76 47 chr1 135915320 135915701 -61279731 + ORR1B1 LTR MaLR 3 394 0 8 1621 309 367 33 8 chr1 135915789 135915910 -61279522 + MER5A DNA MER1_type 61 184 -5 8 1621 787 184 50 0 chr1 135916780 135916921 -61278511 - B1_Mur2 SINE Alu 0 149 2 8 1621 215 274 79 40 chr1 135917084 135917160 -61278272 + MIRc SINE MIR 80 158 -110 8 1621 505 299 65 25 chr1 135917363 135917562 -61277870 + MLT1C LTR MaLR 255 461 -6 8 1621 259 294 144 40 chr1 135917640 135917815 -61277617 - MIR SINE MIR -31 237 41 8 1621 333 272 26 26 chr1 135917815 135917932 -61277500 - PB1D10 SINE Alu 0 117 1 8 1621 208 331 126 42 chr1 135917932 135917964 -61277468 - MIRm SINE MIR -230 46 4 8 1621 1475 25 4 4 chr1 135918997 135919276 -61276156 + (CA)n Simple_repeat Simple_repeat 1 279 0 8 1621 1406 304 55 15 chr1 135919430 135919904 -61275528 - RMER5 LTR ERV1 -9 525 33 8 1621 592 233 119 18 chr1 135920217 135920436 -61274996 + L1MB5 LINE L1 5585 5825 -355 8 1621 532 248 30 0 chr1 135920437 135920570 -61274862 + B3A SINE B2 2 138 -60 8 1621 573 42 0 0 chr1 135920574 135920646 -61274786 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 1621 198 91 0 0 chr1 135920646 135920678 -61274754 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1621 293 169 66 88 chr1 135920744 135920835 -61274597 - YREP_Mm Unknown Unknown -1501 311 223 8 1621 592 152 22 0 chr1 135920759 135920851 -61274581 + PB1D7 SINE Alu 21 114 -6 9 1621 997 246 83 7 chr1 135920898 135921188 -61274244 + L1MB5 LINE L1 5855 6166 -8 8 1622 939 247 56 9 chr1 135922925 135923158 -61272274 + B4A SINE B4 27 270 -22 9 1622 351 0 0 0 chr1 135923365 135923404 -61272028 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1622 321 26 0 0 chr1 135924024 135924062 -61271370 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 9 1622 1023 205 13 85 chr1 135924161 135924200 -61271232 + B3 SINE B2 2 26 -190 9 1622 1169 68 0 7 chr1 135924200 135924338 -61271094 + B1_Mus2 SINE Alu 1 138 -9 9 1622 207 0 0 0 chr1 135924338 135924361 -61271071 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1622 1023 205 13 85 chr1 135924369 135924553 -61270879 + B3 SINE B2 27 209 -7 9 1622 748 258 6 6 chr1 135924658 135924818 -61270614 + RSINE1 SINE B4 4 163 -2 9 1622 395 178 27 0 chr1 135926131 135926204 -61269228 - ID4_ SINE ID 0 83 9 9 1622 258 105 0 0 chr1 135926280 135926318 -61269114 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 9 1622 410 289 63 7 chr1 135926535 135926678 -61268754 - ORR1E LTR MaLR -208 151 1 9 1622 1184 165 176 4 chr1 135926722 135926977 -61268455 + MTD LTR MaLR 1 299 -120 9 1622 187 255 59 0 chr1 135926978 135927029 -61268403 + MIR SINE MIR 130 183 -79 9 1622 204 125 0 0 chr1 135927422 135927454 -61267978 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1622 293 250 29 0 chr1 135927520 135927588 -61267844 + B1F SINE Alu 80 149 0 9 1622 239 291 0 0 chr1 135927700 135927755 -61267677 - MT2A LTR ERVL -191 342 288 9 1622 456 208 0 0 chr1 135927787 135927893 -61267539 + (CCA)n Simple_repeat Simple_repeat 1 106 0 9 1622 287 309 134 22 chr1 135927943 135928122 -61267310 - MLT2B3 LTR ERVL -355 199 1 9 1622 183 268 108 40 chr1 135929212 135929286 -61266146 + L3 LINE CR1 841 919 -3570 9 1622 1072 96 0 7 chr1 135931422 135931559 -61263873 + B1_Mus2 SINE Alu 3 138 -9 9 1622 626 62 0 10 chr1 135931559 135931656 -61263776 + (GA)n Simple_repeat Simple_repeat 2 97 0 9 1622 267 157 0 0 chr1 135931658 135931709 -61263723 + GA-rich Low_complexity Low_complexity 1 51 0 9 1622 727 239 94 20 chr1 135931825 135932026 -61263406 - B3 SINE B2 0 216 1 9 1622 1263 92 0 6 chr1 135932505 135932679 -61262753 - B2_Mm2 SINE B2 -22 173 1 9 1622 193 338 44 37 chr1 135932949 135933084 -61262348 + L2 LINE L2 2363 2498 -921 9 1622 1033 167 79 16 chr1 135933154 135933343 -61262089 + B3 SINE B2 16 216 0 9 1622 841 176 0 0 chr1 135935697 135935828 -61259604 + B1_Mur2 SINE Alu 12 142 -7 9 1622 378 0 0 0 chr1 135937827 135937869 -61257563 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9 1622 495 0 0 0 chr1 135937870 135937925 -61257507 + (TTA)n Simple_repeat Simple_repeat 3 57 0 9 1622 1057 136 179 25 chr1 135938233 135938429 -61257003 + URR1A DNA MER1_type 1 226 0 9 1622 441 0 0 0 chr1 135938560 135938609 -61256823 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1622 222 171 0 0 chr1 135940338 135940379 -61255053 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1622 345 319 89 42 chr1 135941805 135941995 -61253437 + B4A SINE B4 94 292 0 9 1622 606 243 20 67 chr1 135942067 135942238 -61253194 + ID_B1 SINE B4 70 222 -2 9 1622 817 178 14 0 chr1 135942295 135942441 -61252991 - B1_Mur3 SINE Alu -1 148 1 9 1622 630 207 7 5 chr1 135944996 135945426 -61250006 + (CA)n Simple_repeat Simple_repeat 1 430 0 9 1622 756 271 101 56 chr1 135945965 135946302 -61249130 - ORR1E LTR MaLR -7 352 1 9 1622 201 158 53 0 chr1 135946412 135946469 -61248963 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1622 276 30 0 0 chr1 135946471 135946504 -61248928 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1622 615 141 74 8 chr1 135946504 135946626 -61248806 - B1_Mur4 SINE Alu -20 130 1 9 1622 3237 301 91 48 chr1 135946626 135947796 -61247636 - ORR1E-int LTR MaLR -89 1874 225 9 1622 855 161 42 0 chr1 135947796 135947939 -61247493 + B1_Mur2 SINE Alu 1 149 0 9 1622 3237 306 88 50 chr1 135947939 135948172 -61247260 - ORR1E-int LTR MaLR -1356 224 5 9 1622 1271 41 0 0 chr1 135948237 135948384 -61247048 + B1_Mus2 SINE Alu 1 147 0 9 1622 303 28 0 0 chr1 135948384 135948420 -61247012 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1622 633 313 68 15 chr1 135948426 135948689 -61246743 - ORR1E LTR MaLR -80 279 3 9 1622 21 0 0 0 chr1 135948814 135948835 -61246597 + GC_rich Low_complexity Low_complexity 1 21 0 9 1622 1284 34 0 0 chr1 135949155 135949301 -61246131 + B1_Mm SINE Alu 2 147 0 9 1622 1031 244 186 70 chr1 135949309 135949568 -61245864 + RMER4B LTR ERVK 33 276 -309 9 1622 540 68 0 0 chr1 135949568 135949641 -61245791 + (TGG)n Simple_repeat Simple_repeat 1 73 0 9 1622 1031 244 186 70 chr1 135949641 135949869 -61245563 + RMER4B LTR ERVK 277 577 -8 9 1622 713 179 10 131 chr1 135950018 135950224 -61245208 + URR1A DNA MER1_type 46 226 0 9 1622 528 242 58 0 chr1 135950304 135950424 -61245008 - PB1 SINE Alu 0 127 1 9 1622 379 316 45 6 chr1 135950510 135950688 -61244744 - Charlie4a DNA MER1_type -143 365 181 9 1622 479 276 75 0 chr1 135950688 135950822 -61244610 + ID_B1 SINE B4 81 224 0 9 1622 225 132 0 0 chr1 135951330 135951368 -61244064 + (TCC)n Simple_repeat Simple_repeat 3 40 0 9 1622 357 331 86 79 chr1 135952469 135952761 -61242671 - MLT1N2 LTR MaLR -258 304 11 9 1622 339 304 123 79 chr1 135952962 135953346 -61242086 - MLT1D LTR MaLR -1 504 53 9 1622 296 218 73 49 chr1 135953801 135953883 -61241549 + Tigger5 DNA MER2_type 40 123 -2283 9 1622 288 0 0 0 chr1 135955852 135955884 -61239548 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1622 362 218 5 3 chr1 135955957 135956037 -61239395 + PB1D10 SINE Alu 17 97 -52 9 1622 361 292 19 19 chr1 135956388 135956496 -61238936 - MIRb SINE MIR -89 179 72 9 1622 232 343 0 0 chr1 135958594 135958661 -61236771 + PB1D10 SINE Alu 1 67 -50 9 1622 245 213 19 160 chr1 135958706 135958725 -61236707 + MT2B LTR ERVL 149 152 -449 9 1622 487 211 0 28 chr1 135958725 135958832 -61236600 + B1_Mur2 SINE Alu 1 104 -45 9 1622 249 33 0 0 chr1 135958832 135958862 -61236570 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 1622 236 336 93 14 chr1 135960516 135960655 -61234777 + MIRc SINE MIR 113 262 -6 9 1622 210 182 23 0 chr1 135962259 135962303 -61233129 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1622 414 229 92 0 chr1 135962330 135962439 -61232993 + PB1D9 SINE Alu 1 119 -1 9 1622 281 280 0 0 chr1 135962502 135962577 -61232855 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 9 1622 606 51 0 0 chr1 135962865 135962943 -61232489 + (TCC)n Simple_repeat Simple_repeat 1 78 0 9 1622 399 336 94 0 chr1 135962964 135963113 -61232319 + MIRb SINE MIR 45 207 -61 9 1622 254 321 63 42 chr1 135963196 135963339 -61232093 - L2b LINE L2 0 3375 3230 9 1622 795 61 0 0 chr1 135964165 135964279 -61231153 + (CA)n Simple_repeat Simple_repeat 1 114 0 9 1622 591 316 30 15 chr1 135964972 135965171 -61230261 + ID_B1 SINE B4 1 202 -22 9 1622 204 67 0 0 chr1 135965396 135965426 -61230006 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 9 1622 208 160 16 48 chr1 135965423 135965455 -61229977 + T-rich Low_complexity Low_complexity 91 121 0 9 1622 1219 41 7 0 chr1 135965455 135965600 -61229832 - B1_Mus2 SINE Alu 0 147 2 9 1622 208 160 16 48 chr1 135965600 135965692 -61229740 + T-rich Low_complexity Low_complexity 1 90 0 9 1622 772 164 64 7 chr1 135965695 135965836 -61229596 - B1_Mur4 SINE Alu 0 150 2 9 1622 1062 130 173 25 chr1 135966074 135966271 -61229161 + URR1A DNA MER1_type 1 226 0 9 1622 642 276 133 0 chr1 135967719 135967900 -61227532 + ID_B1 SINE B4 8 212 -12 9 1622 198 0 0 0 chr1 135967900 135967922 -61227510 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 9 1622 242 270 16 0 chr1 135969348 135969411 -61226021 + CT-rich Low_complexity Low_complexity 3 66 0 9 1622 559 277 0 0 chr1 135969411 135969530 -61225902 - PB1D7 SINE Alu -1 119 1 9 1622 493 262 157 35 chr1 135971093 135971322 -61224110 - MER2 DNA MER2_type -6 339 83 9 1622 320 343 0 35 chr1 135971425 135971570 -61223862 - MER2B DNA MER2_type -171 165 26 9 1622 543 16 0 0 chr1 135976357 135976421 -61219011 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1622 462 197 191 32 chr1 135978283 135978409 -61217023 + B1_Mur1 SINE Alu 2 147 -2 9 1622 277 254 88 47 chr1 135978661 135978781 -61216651 - PB1D9 SINE Alu -21 128 9 9 1622 759 238 0 13 chr1 135978879 135979028 -61216404 + B1_Mur1 SINE Alu 3 149 0 9 1622 297 333 164 0 chr1 135981014 135981179 -61214253 + MIR SINE MIR 71 262 0 9 1622 372 68 27 14 chr1 135982037 135982111 -61213321 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 9 1622 919 219 55 51 chr1 135982234 135982451 -61212981 + ID_B1 SINE B4 5 222 -2 9 1622 206 288 17 0 chr1 135983554 135983613 -61211819 + MIR3 SINE MIR 106 165 -43 9 1622 848 175 15 0 chr1 135984117 135984254 -61211178 + B1_Mus1 SINE Alu 1 139 -9 9 1622 286 288 268 16 chr1 135984435 135984629 -61210803 + MIR SINE MIR 10 252 -10 9 1622 279 0 0 0 chr1 135984637 135984668 -61210764 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1622 911 150 8 0 chr1 135984672 135984805 -61210627 - B1_Mur3 SINE Alu -13 136 3 9 1622 207 0 0 0 chr1 135984958 135984981 -61210451 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 9 1622 915 254 24 0 chr1 135984981 135985186 -61210246 - ID_B1 SINE B4 -14 210 1 9 1622 37 23 0 0 chr1 135985476 135985520 -61209912 + AT_rich Low_complexity Low_complexity 1 44 0 9 1622 466 346 41 46 chr1 135985710 135985907 -61209525 + B3A SINE B2 3 198 0 9 1622 616 289 7 7 chr1 135985923 135986073 -61209359 + RSINE1 SINE B4 3 152 -13 1 1622 5585 30 5 0 chr1 135986136 135986777 -61208655 - L1Md_F2 LINE L1 -3 6579 5936 1 1622 2601 122 30 2 chr1 135987244 135987646 -61207786 + MTC LTR MaLR 1 413 -8 1 1622 253 333 88 0 chr1 135990978 135991092 -61204340 + MIR SINE MIR 64 187 -75 1 1622 315 71 0 0 chr1 135992234 135992276 -61203156 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1622 357 210 37 0 chr1 135994807 135994888 -61200544 - PB1D10 SINE Alu -2 115 32 1 1622 264 327 105 9 chr1 135996649 135996754 -61198678 + MIR SINE MIR 146 260 -2 1 1622 225 312 14 105 chr1 135998127 135998270 -61197162 + MTEa LTR MaLR 249 378 -1 1 1622 364 366 32 7 chr1 135998597 135998751 -61196681 - L2a LINE L2 -6 3420 3263 1 1622 1756 194 22 19 chr1 135998797 135999159 -61196273 - MTD LTR MaLR -54 365 3 1 1622 801 197 14 21 chr1 135999235 135999380 -61196052 - B1_Mur2 SINE Alu -5 144 1 1 1622 310 294 109 29 chr1 135999573 135999783 -61195649 - L2a LINE L2 -578 2841 2615 1 1622 225 0 0 0 chr1 135999975 136000000 -61195432 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1622 252 154 0 0 chr1 136000663 136000715 -61194717 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 1 1622 312 339 226 0 chr1 136001060 136001175 -61194257 + RSINE1 SINE B4 4 144 -21 2 1622 369 0 0 0 chr1 136001190 136001231 -61194201 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1622 391 253 0 0 chr1 136001352 136001431 -61194001 + PB1 SINE Alu 30 108 -19 4 1622 711 0 0 0 chr1 136001697 136001776 -61193656 + (GGAGA)n Simple_repeat Simple_repeat 1 79 0 5 1622 381 43 0 0 chr1 136003248 136003295 -61192137 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1622 333 0 0 0 chr1 136003295 136003331 -61192101 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1622 304 244 38 13 chr1 136003812 136003891 -61191541 + HAL1-2a_MD LINE L1 2340 2420 -604 8 1622 434 243 40 112 chr1 136003910 136004035 -61191397 - RSINE1 SINE B4 -36 129 14 9 1622 386 279 49 168 chr1 136004081 136004266 -61191166 - RSINE1 SINE B4 -1 164 2 1 1622 298 282 103 54 chr1 136005052 136005236 -61190196 + MIR SINE MIR 8 200 -62 1 1622 1189 55 0 7 chr1 136005739 136005886 -61189546 + B1_Mus2 SINE Alu 1 146 -1 1 1622 202 174 43 0 chr1 136006546 136006592 -61188840 + G-rich Low_complexity Low_complexity 2 49 0 1 1622 396 0 0 0 chr1 136006701 136006745 -61188687 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1622 346 204 18 0 chr1 136006754 136006847 -61188585 + MLT1J1 LTR MaLR 64 195 -317 1 1622 441 0 0 0 chr1 136006947 136006996 -61188436 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1622 869 180 214 0 chr1 136007352 136007530 -61187902 + B3 SINE B2 1 216 0 1 1622 746 158 68 48 chr1 136007550 136007696 -61187736 + B1_Mur4 SINE Alu 1 149 -1 1 1622 1685 161 60 19 chr1 136007703 136008019 -61187413 + ORR1A4 LTR MaLR 1 329 0 1 1622 2413 156 63 20 chr1 136008019 136008623 -61186809 + ORR1A4-int LTR MaLR 1 657 -1306 1 1622 1959 142 37 12 chr1 136008623 136008944 -61186488 + ORR1A4 LTR MaLR 1 329 0 1 1622 757 231 14 76 chr1 136009380 136009591 -61185841 + B3A SINE B2 1 198 0 2 1622 645 14 0 0 chr1 136010557 136010631 -61184801 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1622 775 93 16 33 chr1 136010631 136010753 -61184679 - B1_Mus1 SINE Alu -16 132 13 2 1622 353 234 65 137 chr1 136010649 136010817 -61184615 - B4 SINE B4 -88 204 49 2 1622 246 276 92 37 chr1 136010789 136010898 -61184534 - B4A SINE B4 -132 160 46 2 1622 273 89 0 0 chr1 136011030 136011075 -61184357 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2 1622 363 23 0 0 chr1 136011076 136011120 -61184312 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1622 338 281 62 147 chr1 136013264 136013355 -61182077 + L1M5 LINE L1 3360 3454 -2692 2 1622 703 223 110 57 chr1 136013355 136013564 -61181868 - ID_B1 SINE B4 -2 222 3 2 1622 338 281 62 147 chr1 136013564 136013626 -61181806 + L1M5 LINE L1 3455 3513 -2633 2 1622 186 43 0 0 chr1 136013626 136013649 -61181783 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1622 338 281 62 147 chr1 136013649 136013753 -61181679 + L1M5 LINE L1 3514 3596 -2550 2 1622 533 223 0 0 chr1 136013789 136013901 -61181531 - PB1D9 SINE Alu -6 114 3 3 1622 232 319 110 0 chr1 136013994 136014085 -61181347 + ID_B1 SINE B4 90 190 -34 3 1622 380 194 2 11 chr1 136014024 136014096 -61181336 + B1F SINE Alu 52 119 -1 3 1622 286 282 105 34 chr1 136014105 136014314 -61181118 + L1M5 LINE L1 3670 3893 -2253 2 1622 296 251 0 6 chr1 136014446 136014618 -61180814 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1622 198 191 0 0 chr1 136014649 136014691 -61180741 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1622 355 287 63 30 chr1 136014703 136014946 -61180486 + L1M5 LINE L1 4086 4333 -1810 2 1622 323 277 54 60 chr1 136015212 136015433 -61179999 + L1M5 LINE L1 4550 4768 -1378 2 1622 294 270 30 0 chr1 136015443 136015543 -61179889 + PB1D10 SINE Alu 1 103 -14 3 1622 681 47 0 0 chr1 136015591 136015676 -61179756 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 3 1622 1474 188 131 15 chr1 136015753 136015885 -61179547 - ORR1D1 LTR MaLR 0 374 231 3 1622 962 54 69 0 chr1 136015885 136016221 -61179211 + (CAGG)n Simple_repeat Simple_repeat 1 359 0 3 1622 1474 188 131 15 chr1 136016221 136016421 -61179011 - ORR1D1 LTR MaLR -144 230 1 3 1622 446 304 129 71 chr1 136017316 136017780 -61177652 + L1MB2 LINE L1 5381 5871 -300 3 1622 1162 69 0 14 chr1 136017825 136017972 -61177460 + B1_Mus2 SINE Alu 1 145 -2 3 1622 888 286 49 4 chr1 136017980 136018205 -61177227 - MTE2b LTR MaLR 0 379 145 4 1622 474 159 9 27 chr1 136018291 136018401 -61177031 + Lx9 LINE L1 7536 7643 -1 4 1622 655 25 0 0 chr1 136018419 136018498 -61176934 + B1_Mus2 SINE Alu 66 144 -3 4 1622 252 0 0 0 chr1 136018498 136018526 -61176906 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1622 544 253 34 0 chr1 136018619 136018765 -61176667 + L1MA4 LINE L1 5789 5939 -361 4 1622 570 272 165 6 chr1 136018794 136018964 -61176468 + B4A SINE B4 3 199 -93 4 1622 395 192 49 133 chr1 136018959 136019064 -61176368 + B3A SINE B2 94 196 -2 4 1622 793 176 0 14 chr1 136019169 136019307 -61176125 + B1_Mur2 SINE Alu 14 149 0 4 1622 250 275 29 14 chr1 136019328 136019398 -61176034 + ID4_ SINE ID 2 72 -11 4 1622 308 337 30 4 chr1 136019676 136019941 -61175491 + L1MEg LINE L1 779 1050 -5034 4 1622 291 284 0 0 chr1 136019977 136020044 -61175388 + PB1D7 SINE Alu 49 115 -5 5 1622 257 240 55 27 chr1 136020145 136020227 -61175205 + ID4 SINE ID 9 92 -60 5 1622 479 301 93 4 chr1 136020286 136020533 -61174899 + L1MEg LINE L1 1254 1522 -4562 4 1622 885 192 78 111 chr1 136020588 136020805 -61174627 + B3 SINE B2 5 214 -2 5 1622 446 277 28 50 chr1 136021009 136021191 -61174241 - L1MCb LINE L1 -5048 997 820 5 1622 507 178 31 29 chr1 136021221 136021332 -61174100 - PB1D10 SINE Alu 0 117 8 5 1622 4515 10 2 0 chr1 136021378 136021870 -61173562 + MT2_Mm LTR ERVL 1 493 0 5 1622 1184 0 0 0 chr1 136021870 136022002 -61173430 + MERVL-int LTR ERVL 1 132 -5353 5 1622 33903 17 0 0 chr1 136021999 136025904 -61169528 + MERVL-int LTR ERVL 1455 5360 -125 5 1622 399 167 46 35 chr1 136025904 136025991 -61169441 + ORR1A3-int LTR MaLR 553 640 -1323 5 1622 305 0 0 0 chr1 136025991 136026029 -61169403 + MERVL-int LTR ERVL 5448 5485 0 5 1622 4515 10 2 0 chr1 136026029 136026521 -61168911 + MT2_Mm LTR ERVL 1 493 0 5 1622 2485 198 125 4 chr1 136026627 136027170 -61168262 + RMER19C LTR ERVK 3 611 0 5 1622 251 300 33 22 chr1 136027470 136027562 -61167870 + MTEa LTR MaLR 287 379 0 5 1622 878 193 297 5 chr1 136027592 136027741 -61167691 - ORR1D1 LTR MaLR -5 369 168 5 1622 180 0 0 0 chr1 136027741 136027761 -61167671 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 1622 878 193 297 5 chr1 136027761 136027830 -61167602 - ORR1D1 LTR MaLR -207 167 88 5 1622 2344 154 61 0 chr1 136027818 136028226 -61167206 - ORR1D1-int LTR MaLR -937 433 1 5 1622 610 230 118 16 chr1 136028228 136028471 -61166961 - ORR1D1 LTR MaLR -2 372 1 5 1622 314 277 138 1 chr1 136028511 136028663 -61166769 - L1MB1 LINE L1 -10 6179 6011 6 1622 606 227 7 50 chr1 136028669 136028808 -61166624 - B1_Mur1 SINE Alu -3 146 14 6 1622 486 202 101 160 chr1 136028866 136029054 -61166378 + RLTR18B LTR ERVK 1 177 -335 6 1622 251 280 117 11 chr1 136029074 136029168 -61166264 + RLTR18B LTR ERVK 137 240 -272 6 1622 811 257 103 91 chr1 136029204 136029562 -61165870 + RLTR18B LTR ERVK 111 613 -3 6 1622 1406 84 16 0 chr1 136030252 136030443 -61164989 - B2_Mm2 SINE B2 0 195 2 6 1622 471 259 15 26 chr1 136030594 136030733 -61164699 - RSINE1 SINE B4 -155 137 6 6 1622 262 152 0 21 chr1 136030813 136030860 -61164572 - MER21B LTR ERV1 -691 172 127 6 1622 531 101 0 0 chr1 136031286 136031365 -61164067 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 6 1622 238 320 52 39 chr1 136031513 136031666 -61163766 - L2 LINE L2 -542 2877 2723 6 1622 2364 89 6 61 chr1 136031776 136032122 -61163310 + ORR1A2 LTR MaLR 1 327 0 7 1622 255 286 172 0 chr1 136032370 136032518 -61162914 - MIRc SINE MIR -22 246 82 7 1622 217 146 0 59 chr1 136033026 136033077 -61162355 + C-rich Low_complexity Low_complexity 5 52 0 7 1622 243 296 0 36 chr1 136033376 136033460 -61161972 + L1_Rod LINE L1 2097 2177 -3670 7 1622 2656 262 63 21 chr1 136033456 136034695 -61160737 + Lx7 LINE L1 5118 6439 -1257 7 1622 234 91 0 0 chr1 136035146 136035179 -61160253 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 1622 878 199 63 19 chr1 136035745 136035950 -61159482 - B3 SINE B2 0 216 3 7 1622 414 0 0 0 chr1 136035974 136036020 -61159412 + (TTA)n Simple_repeat Simple_repeat 3 48 0 7 1622 1439 73 0 20 chr1 136036031 136036226 -61159206 + B2_Mm2 SINE B2 2 192 -3 7 1622 369 0 0 0 chr1 136036235 136036276 -61159156 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1622 222 208 0 0 chr1 136036961 136037009 -61158423 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1622 321 218 0 0 chr1 136037040 136037118 -61158314 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1622 348 262 0 0 chr1 136037152 136037255 -61158177 + (CA)n Simple_repeat Simple_repeat 2 104 0 8 1622 202 206 0 0 chr1 136037290 136037324 -61158108 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1622 204 217 0 0 chr1 136037353 136037399 -61158033 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 8 1622 210 191 0 0 chr1 136037427 136037469 -61157963 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1622 232 304 50 42 chr1 136040104 136040224 -61155208 + MIR3 SINE MIR 63 183 -25 8 1622 517 231 77 0 chr1 136042656 136042771 -61152661 + B1_Mur1 SINE Alu 6 128 -21 8 1622 441 50 0 0 chr1 136042776 136042836 -61152596 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1622 280 242 250 11 chr1 136042838 136042930 -61152502 + MER5A1 DNA MER1_type 53 166 0 8 1622 253 360 0 0 chr1 136044595 136044695 -61150737 + L2a LINE L2 3324 3423 -3 8 1622 3002 156 30 36 chr1 136045374 136045906 -61149526 - RLTR24 LTR ERV1 0 529 1 8 1622 285 357 56 102 chr1 136046118 136046217 -61149215 - Charlie23a DNA MER1_type -15 324 234 8 1622 359 254 0 0 chr1 136046217 136046288 -61149144 + ID4_ SINE ID 3 73 -10 9 1622 285 357 56 102 chr1 136046288 136046306 -61149126 - Charlie23a DNA MER1_type -106 233 216 8 1622 623 13 13 0 chr1 136046306 136046382 -61149050 + (GA)n Simple_repeat Simple_repeat 2 78 0 9 1622 285 357 56 102 chr1 136046382 136046547 -61148885 - Charlie23a DNA MER1_type -124 215 55 8 1622 190 411 9 0 chr1 136048546 136048658 -61146774 - MIR SINE MIR -17 245 133 9 1622 489 236 27 0 chr1 136048769 136048879 -61146553 + PB1D10 SINE Alu 5 117 0 9 1622 291 160 0 0 chr1 136048879 136048954 -61146478 + A-rich Low_complexity Low_complexity 1 75 0 9 1622 200 349 75 30 chr1 136049638 136049839 -61145593 + L2 LINE L2 2669 2878 -541 9 1622 501 279 39 8 chr1 136051083 136051213 -61144219 - ID_B1 SINE B4 -49 175 42 9 1622 948 155 43 22 chr1 136051337 136051522 -61143910 - B2_Mm2 SINE B2 -6 189 1 9 1622 270 259 106 44 chr1 136052257 136052370 -61143062 - MER97c DNA MER1_type? -911 179 60 9 202 1214 131 14 37 chr1 136052590 136052804 -61142628 + B3 SINE B2 8 216 0 9 1623 1353 60 60 5 chr1 136053102 136053286 -61142146 + B2_Mm2 SINE B2 2 195 0 1 1623 304 299 81 27 chr1 136053464 136053612 -61141820 - L1MC LINE L1 -803 5343 5188 1 1623 195 129 0 0 chr1 136053612 136053643 -61141789 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1 1623 424 269 8 70 chr1 136053803 136053931 -61141501 + PB1D9 SINE Alu 1 120 0 1 1623 538 346 110 51 chr1 136053985 136054716 -61140716 - L1MC LINE L1 -1103 5043 4235 1 1623 255 31 0 0 chr1 136054724 136054756 -61140676 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1623 1028 63 0 0 chr1 136054757 136054883 -61140549 - B2_Mm2 SINE B2 -33 162 37 1 1623 384 348 89 8 chr1 136054986 136055232 -61140200 - L1MC LINE L1 -1849 4297 4032 1 1623 546 336 34 0 chr1 136055257 136055406 -61140026 - ID_B1 SINE B4 -1 223 70 1 1623 255 296 122 43 chr1 136055406 136055660 -61139772 - L1MC LINE L1 -2147 3999 3726 1 1623 866 103 0 60 chr1 136055692 136055826 -61139606 + B2_Mm2 SINE B2 1 126 -69 1 1623 23 0 0 0 chr1 136056021 136056044 -61139388 + AT_rich Low_complexity Low_complexity 1 23 0 1 1623 261 0 0 0 chr1 136056861 136056890 -61138542 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1623 190 136 45 0 chr1 136058757 136058801 -61136631 + GA-rich Low_complexity Low_complexity 2 47 0 1 1623 1207 159 51 14 chr1 136058886 136059103 -61136329 + URR1B DNA MER1_type 1 225 0 1 1623 190 0 32 32 chr1 136059241 136059272 -61136160 + (GTTTG)n Simple_repeat Simple_repeat 1 31 0 1 1623 730 253 0 6 chr1 136059458 136059621 -61135811 + B3A SINE B2 37 198 0 1 1623 618 189 0 0 chr1 136059708 136060018 -61135414 + (CA)n Simple_repeat Simple_repeat 1 310 0 1 1623 199 258 0 57 chr1 136060330 136060400 -61135032 + L2c LINE L2 3317 3382 -5 1 1623 425 200 0 12 chr1 136060400 136060486 -61134946 + PB1D10 SINE Alu 33 117 0 1 1623 316 62 0 0 chr1 136061822 136061870 -61133562 - URR1B DNA MER1_type -68 157 110 1 1623 3670 15 0 0 chr1 136062280 136062676 -61132756 - MTA_Mm LTR MaLR 0 396 1 1 1623 1541 151 93 0 chr1 136062913 136063080 -61132352 + ORR1C2 LTR MaLR 2 171 -213 1 1623 423 0 0 0 chr1 136063080 136063127 -61132305 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1623 1541 151 93 0 chr1 136063127 136063238 -61132194 + ORR1C2 LTR MaLR 172 304 -80 1 1623 2150 93 19 0 chr1 136063241 136063554 -61131878 + ORR1A2 LTR MaLR 1 319 -8 1 1623 1618 96 46 8 chr1 136063552 136063745 -61131687 + RLTR11A LTR ERVK 256 446 -82 1 1623 279 79 0 0 chr1 136063745 136063783 -61131649 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1623 1618 96 46 8 chr1 136063783 136063852 -61131580 + RLTR11A LTR ERVK 447 526 -2 1 1623 240 200 0 0 chr1 136063863 136063908 -61131524 + PB1 SINE Alu 76 120 -7 1 1623 228 363 35 2 chr1 136064874 136065006 -61130426 + MIRb SINE MIR 40 171 -91 1 1623 414 185 0 0 chr1 136065109 136065190 -61130242 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1623 788 299 176 30 chr1 136065928 136065983 -61129449 - MLT1D LTR MaLR 0 505 459 1 1623 4710 107 37 68 chr1 136065983 136066514 -61128918 + RMER6A LTR ERVK 2 487 -269 1 1623 783 0 0 0 chr1 136066514 136066601 -61128831 + (GGAGA)n Simple_repeat Simple_repeat 5 91 0 1 1623 4710 107 37 68 chr1 136066601 136066848 -61128584 + RMER6A LTR ERVK 488 756 0 1 1623 788 299 176 30 chr1 136066848 136067121 -61128311 - MLT1D LTR MaLR -47 458 126 1 1623 1846 175 90 34 chr1 136067121 136067319 -61128113 - ORR1D1 LTR MaLR 0 374 173 1 1623 678 25 0 0 chr1 136067319 136067399 -61128033 + (GAA)n Simple_repeat Simple_repeat 1 80 0 1 1623 1846 175 90 34 chr1 136067399 136067554 -61127878 - ORR1D1 LTR MaLR -202 172 2 1 1623 788 299 176 30 chr1 136067554 136067655 -61127777 - MLT1D LTR MaLR -380 125 12 1 1623 751 224 88 28 chr1 136068168 136068384 -61127048 - B4 SINE B4 -62 230 2 1 1623 804 241 84 0 chr1 136068711 136068902 -61126530 + B3 SINE B2 5 211 -5 1 1623 467 199 150 8 chr1 136069152 136069279 -61126153 + RSINE1 SINE B4 2 146 -19 1 1623 702 0 0 0 chr1 136069450 136069528 -61125904 + (TCTCC)n Simple_repeat Simple_repeat 4 81 0 1 1623 237 389 9 0 chr1 136069663 136069776 -61125656 + PB1D10 SINE Alu 3 116 -1 1 1623 284 293 13 0 chr1 136069946 136070021 -61125411 + MER58B DNA MER1_type 186 261 -80 1 1623 559 271 28 0 chr1 136070873 136071017 -61124415 - MER31A LTR ERV1 -16 469 322 1 1623 526 249 47 89 chr1 136071010 136071200 -61124232 - MTEa LTR MaLR -16 363 182 1 1623 465 19 0 0 chr1 136071204 136071258 -61124174 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1623 734 162 95 7 chr1 136071292 136071429 -61124003 + B1_Mur4 SINE Alu 1 149 -1 1 1623 776 257 0 0 chr1 136071589 136071741 -61123691 - MTEa LTR MaLR -225 154 3 1 1623 528 214 251 57 chr1 136071741 136072004 -61123428 - MER31A LTR ERV1 -158 327 14 1 1623 354 235 48 5 chr1 136073322 136073428 -61122004 - B1F SINE Alu -2 147 15 1 1623 344 238 115 29 chr1 136074393 136074497 -61120935 + LTR40a LTR ERVL 180 292 -227 1 1623 586 284 171 10 chr1 136074590 136074929 -61120503 + MTD LTR MaLR 15 419 0 1 1623 443 375 89 10 chr1 136075254 136075545 -61119887 + LTR83 LTR ERVL 65 378 -402 1 1623 731 224 7 0 chr1 136075976 136076119 -61119313 + B1_Mur2 SINE Alu 5 148 -1 1 1623 366 134 274 43 chr1 136076528 136076645 -61118787 - B2_Mm2 SINE B2 -5 190 47 1 1623 1295 92 17 0 chr1 136076692 136076866 -61118566 - B2_Mm1t SINE B2 -14 179 3 1 1623 396 0 0 0 chr1 136077777 136077821 -61117611 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1623 246 95 0 0 chr1 136077874 136077916 -61117516 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1623 198 0 0 0 chr1 136077998 136078020 -61117412 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1623 416 282 36 0 chr1 136078034 136078144 -61117288 + PB1D7 SINE Alu 5 118 -2 1 1623 214 326 21 0 chr1 136079214 136079309 -61116123 + GA-rich Low_complexity Low_complexity 1 97 0 1 1623 225 0 0 0 chr1 136080918 136080943 -61114489 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1623 234 0 0 0 chr1 136080987 136081013 -61114419 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1623 501 62 0 0 chr1 136081013 136081077 -61114355 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1623 345 215 0 93 chr1 136081091 136081188 -61114244 - B1F SINE Alu -19 101 13 1 1623 1206 35 0 7 chr1 136082367 136082511 -61112921 + B1_Mm SINE Alu 5 147 0 1 1623 1103 270 56 62 chr1 136082609 136082897 -61112535 - B4 SINE B4 -5 287 2 1 1623 187 148 25 13 chr1 136083312 136083367 -61112065 + MIR SINE MIR 109 169 -99 1 1623 333 48 0 0 chr1 136083920 136083962 -61111470 - HAL1-3A_ME LINE L1 -841 2017 1976 1 1623 366 289 0 0 chr1 136083975 136084141 -61111291 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 1623 294 241 0 0 chr1 136084155 136084242 -61111190 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1623 207 292 96 40 chr1 136084741 136084866 -61110566 + MIRc SINE MIR 7 138 -130 1 1623 926 72 14 0 chr1 136086940 136087079 -61108353 + URR1A DNA MER1_type 80 220 -6 1 1623 360 261 154 0 chr1 136089080 136089210 -61106222 + MLT1A1 LTR MaLR 6 155 -253 1 1623 334 280 30 10 chr1 136089336 136089437 -61105995 + MLT1A1 LTR MaLR 259 361 -4 1 1623 333 0 0 0 chr1 136091071 136091108 -61104324 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1623 235 261 11 74 chr1 136094511 136094606 -61100826 + MIR SINE MIR 39 127 -81 1 1623 399 299 40 20 chr1 136094639 136094789 -61100643 - MER5A1 DNA MER1_type -13 153 1 1 1623 219 69 0 0 chr1 136095255 136095284 -61100148 + (CACCC)n Simple_repeat Simple_repeat 5 33 0 1 1623 475 147 8 8 chr1 136095650 136095767 -61099665 + (CA)n Simple_repeat Simple_repeat 1 117 0 1 1623 715 234 52 0 chr1 136095819 136095973 -61099459 - RSINE1 SINE B4 -1 164 3 1 1623 222 118 0 0 chr1 136097933 136097967 -61097465 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1623 369 0 0 0 chr1 136098505 136098546 -61096886 + (GTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1623 787 208 7 26 chr1 136100396 136100549 -61094883 + B1_Mur4 SINE Alu 1 150 0 1 1623 879 196 207 0 chr1 136101177 136101356 -61094076 - B3 SINE B2 0 216 1 1 1623 529 251 163 37 chr1 136101388 136101578 -61093854 - B3 SINE B2 -2 214 1 1 1623 24 0 0 0 chr1 136101583 136101607 -61093825 + AT_rich Low_complexity Low_complexity 1 24 0 1 1623 571 232 62 31 chr1 136101619 136101748 -61093684 - RSINE1 SINE B4 -29 136 4 1 1623 599 203 21 57 chr1 136103880 136104021 -61091411 + ID_B1 SINE B4 87 222 -2 1 1623 446 295 9 0 chr1 136104051 136104156 -61091276 + PB1D10 SINE Alu 1 106 -11 1 1623 352 273 11 33 chr1 136104180 136104271 -61091161 - RSINE1 SINE B4 -68 97 9 1 1623 2126 104 24 62 chr1 136104489 136104828 -61090604 - ORR1A3 LTR MaLR 0 326 1 1 1623 195 336 0 80 chr1 136105041 136105154 -61090278 - MIR SINE MIR -101 161 58 1 1623 244 361 94 28 chr1 136105503 136105822 -61089610 - L2 LINE L2 -541 2878 2539 1 1623 180 189 27 0 chr1 136105974 136106011 -61089421 + L2a LINE L2 3108 3145 -230 1 1623 219 351 75 52 chr1 136106068 136106256 -61089176 + L2a LINE L2 3208 3387 0 1 1623 807 145 72 7 chr1 136106417 136106556 -61088876 + B1_Mur2 SINE Alu 1 148 -1 1 1623 242 240 69 104 chr1 136107484 136107628 -61087804 + LTR33A_ LTR ERVL 321 459 -72 1 1623 1987 231 40 18 chr1 136111408 136111861 -61083571 + Lx8 LINE L1 6685 7147 -326 1 1623 342 225 139 0 chr1 136111859 136112010 -61083422 + Lx8 LINE L1 7301 7472 -1 1 1623 369 245 41 41 chr1 136112038 136112136 -61083296 + L1MCa LINE L1 2231 2328 -4180 1 1623 200 161 16 0 chr1 136112831 136112893 -61082539 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1623 287 104 21 0 chr1 136113201 136113249 -61082183 + (CCCCCT)n Simple_repeat Simple_repeat 1 49 0 1 1623 492 259 36 0 chr1 136113636 136113775 -61081657 - MER5A1 DNA MER1_type -4 162 19 1 1623 463 230 132 23 chr1 136113944 136114073 -61081359 + ID_B1 SINE B4 82 224 0 1 1623 238 346 25 0 chr1 136114228 136114309 -61081123 - BC1_Mm scRNA scRNA -56 96 14 1 1623 441 285 40 16 chr1 136114333 136114458 -61080974 - B1F SINE Alu -12 137 10 1 1623 268 350 23 39 chr1 136116536 136116664 -61078768 - MIRc SINE MIR -114 154 29 1 1623 1165 83 0 0 chr1 136116828 136116973 -61078459 + B1_Mus1 SINE Alu 3 147 -1 1 1623 261 83 0 0 chr1 136116973 136117009 -61078423 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1623 705 217 14 20 chr1 136117261 136117407 -61078025 + RSINE1 SINE B4 2 146 -19 1 1623 648 276 35 0 chr1 136117861 136118064 -61077368 - L1M2 LINE L1 -566 5725 5516 2 1623 421 315 58 13 chr1 136118164 136118243 -61077189 + L1MA4 LINE L1 5709 5796 -504 2 1623 291 28 0 0 chr1 136118243 136118279 -61077153 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1623 421 315 58 13 chr1 136118279 136118424 -61077008 + L1MA4 LINE L1 5797 5943 -357 2 1623 252 0 0 0 chr1 136118687 136118715 -61076717 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1623 1008 94 9 2 chr1 136119919 136120066 -61075366 + B2_Mm2 SINE B2 1 155 -61 2 1623 481 215 11 21 chr1 136120242 136120337 -61075095 + ID_B1 SINE B4 113 206 -18 2 1623 286 267 84 25 chr1 136121434 136121553 -61073879 + L2 LINE L2 2801 2926 -493 2 1623 335 332 63 45 chr1 136121597 136121818 -61073614 + L2a LINE L2 1242 1466 -1953 2 1623 552 329 93 30 chr1 136121969 136122398 -61073034 + L2a LINE L2 1768 2223 -1196 2 1623 261 327 46 9 chr1 136122405 136122513 -61072919 + L2a LINE L2 2430 2541 -878 2 1623 389 330 140 0 chr1 136122635 136122835 -61072597 - L2a LINE L2 -257 3169 2942 2 1623 412 311 52 0 chr1 136122906 136123118 -61072314 + L1ME3 LINE L1 5850 6072 -90 2 1623 453 346 93 22 chr1 136123221 136123652 -61071780 + L2a LINE L2 2645 3112 -314 2 1623 1219 140 87 0 chr1 136123874 136124081 -61071351 + URR1B DNA MER1_type 1 225 0 2 1623 297 0 0 0 chr1 136124799 136124832 -61070600 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1623 307 41 41 0 chr1 136125170 136125219 -61070213 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1623 279 0 0 0 chr1 136125278 136125309 -61070123 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1623 617 258 0 38 chr1 136125328 136125461 -61069971 - RSINE1 SINE B4 -36 129 2 2 1623 264 122 0 0 chr1 136125477 136125518 -61069914 + (TAA)n Simple_repeat Simple_repeat 3 43 0 2 1623 416 281 81 46 chr1 136125865 136126126 -61069306 + L1ME4a LINE L1 5801 6070 -54 2 1623 25 31 0 0 chr1 136126739 136126771 -61068661 + AT_rich Low_complexity Low_complexity 1 32 0 2 1623 218 340 90 9 chr1 136127387 136127563 -61067869 - MIR3 SINE MIR -8 200 13 2 1623 200 336 0 126 chr1 136128380 136128523 -61066909 - L2b LINE L2 -26 3349 3225 2 1623 429 266 36 79 chr1 136128736 136128875 -61066557 - MIRb SINE MIR -107 161 29 2 1623 225 83 0 0 chr1 136132029 136132065 -61063367 + (CGGGGG)n Simple_repeat Simple_repeat 4 39 0 2 1623 289 174 0 0 chr1 136132515 136132561 -61062871 - MIRm SINE MIR -117 159 114 2 1623 237 132 0 0 chr1 136132591 136132629 -61062803 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2 1623 196 274 67 27 chr1 136132658 136132733 -61062699 - MIR3 SINE MIR -48 160 83 2 1623 415 264 37 19 chr1 136133402 136133510 -61061922 - PB1D10 SINE Alu 0 117 8 2 1623 327 275 191 82 chr1 136133510 136133533 -61061899 - ID_B1 SINE B4 0 224 73 2 1623 230 0 0 32 chr1 136133533 136133564 -61061868 + (TTGG)n Simple_repeat Simple_repeat 3 32 0 2 1623 327 275 191 82 chr1 136133564 136133626 -61061806 - ID SINE ID -152 72 10 2 1623 546 287 30 48 chr1 136134001 136134166 -61061266 + RSINE1 SINE B4 2 163 -2 2 1623 686 233 20 0 chr1 136134742 136134888 -61060544 + B1F SINE Alu 1 149 0 2 1623 447 19 0 0 chr1 136134980 136135032 -61060400 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 2 1623 996 92 0 0 chr1 136135034 136135175 -61060257 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 2 1623 231 282 39 0 chr1 136137221 136137299 -61058133 - ID4_ SINE ID -1 82 2 2 1623 274 243 13 0 chr1 136138858 136138940 -61056492 + L1M4 LINE L1 5679 5764 -476 2 1623 762 179 68 49 chr1 136138977 136139182 -61056250 - L1MB8 LINE L1 -4 6174 5966 2 1623 270 263 55 5 chr1 136139200 136139279 -61056153 - PB1D7 SINE Alu -10 110 22 2 1623 332 214 24 0 chr1 136139340 136139424 -61056008 - L1MB8 LINE L1 -275 5903 5818 2 1623 945 168 0 0 chr1 136139424 136139767 -61055665 + CT-rich Low_complexity Low_complexity 1 343 0 2 1623 589 228 16 16 chr1 136139796 136139921 -61055511 - RSINE1 SINE B4 -38 127 3 2 1623 279 0 0 0 chr1 136139996 136140027 -61055405 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1623 230 139 47 0 chr1 136140674 136140717 -61054715 - ID2 SINE ID -24 59 15 2 1623 181 339 66 57 chr1 136141452 136141574 -61053858 + MIRb SINE MIR 123 245 -23 2 1623 503 171 75 9 chr1 136142578 136142684 -61052748 - PB1D10 SINE Alu -2 115 3 2 1623 201 119 48 0 chr1 136142950 136142992 -61052440 + A-rich Low_complexity Low_complexity 2 45 0 2 1623 767 217 12 58 chr1 136143003 136143174 -61052258 + RSINE1 SINE B4 3 165 0 2 1623 3596 117 55 122 chr1 136143179 136143927 -61051505 - RMER6A LTR ERVK -1 755 58 2 1623 356 227 0 15 chr1 136144000 136144067 -61051365 - L1MEg LINE L1 -4137 1947 1882 2 1623 1258 48 0 0 chr1 136144069 136144216 -61051216 - B1_Mm SINE Alu 0 147 1 2 1623 23 0 0 0 chr1 136144497 136144520 -61050912 + AT_rich Low_complexity Low_complexity 1 23 0 2 1623 678 154 25 33 chr1 136144668 136144789 -61050643 + PB1D9 SINE Alu 1 120 0 2 1623 330 132 0 0 chr1 136144814 136144867 -61050565 + (GGAGAA)n Simple_repeat Simple_repeat 3 55 0 2 1623 362 298 113 56 chr1 136144884 136145115 -61050317 + L1ME4a LINE L1 5749 5992 -132 2 1623 222 289 20 30 chr1 136145232 136145280 -61050152 + polypurine Low_complexity Low_complexity 4 51 0 2 1623 2371 165 16 51 chr1 136145280 136145713 -61049719 + MTC LTR MaLR 4 421 0 2 1623 222 289 20 30 chr1 136145713 136145764 -61049668 + polypurine Low_complexity Low_complexity 52 102 0 2 1623 297 305 7 0 chr1 136146012 136146163 -61049269 + ORR1E-int LTR MaLR 603 754 -755 2 1623 500 205 0 109 chr1 136146031 136146168 -61049264 + MT2B LTR ERVL 143 264 -337 2 1623 1083 31 0 0 chr1 136146064 136146193 -61049239 + B1_Mm SINE Alu 9 137 -10 2 1623 234 0 0 0 chr1 136146193 136146219 -61049213 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1623 1233 82 0 0 chr1 136146224 136146395 -61049037 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 2 1623 184 272 228 0 chr1 136146398 136146490 -61048942 - L2c LINE L2 -239 3148 3036 2 1623 557 209 173 0 chr1 136146668 136146807 -61048625 + RSINE1 SINE B4 3 165 0 2 1623 221 230 30 10 chr1 136146813 136146914 -61048518 + (CATA)n Simple_repeat Simple_repeat 4 106 0 2 1623 237 143 24 0 chr1 136146937 136146979 -61048453 + ORR1E LTR MaLR 5 47 -312 2 1623 1141 64 0 0 chr1 136147445 136147585 -61047847 + B1_Mus2 SINE Alu 1 140 -7 2 1623 405 136 0 0 chr1 136147606 136147672 -61047760 + (A)n Simple_repeat Simple_repeat 1 66 0 2 1623 253 312 132 78 chr1 136147889 136148094 -61047338 + Charlie13a DNA Charlie 164 379 -1135 2 1623 848 278 125 19 chr1 136148096 136148415 -61047017 + ORR1E LTR MaLR 1 353 -6 2 1623 367 283 58 7 chr1 136148471 136148610 -61046822 + Charlie13a DNA Charlie 417 562 -952 2 1623 31 0 0 0 chr1 136148843 136148874 -61046558 + AT_rich Low_complexity Low_complexity 1 31 0 2 1623 981 271 142 37 chr1 136149056 136149519 -61045913 - Lx8 LINE L1 -248 7225 6714 2 1623 201 74 0 0 chr1 136149519 136149546 -61045886 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1623 504 237 7 11 chr1 136149546 136149652 -61045780 - B1_Mur3 SINE Alu -10 110 1 2 1623 548 14 0 14 chr1 136149652 136149722 -61045710 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2 1623 525 32 0 0 chr1 136149722 136149785 -61045647 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1623 846 270 20 0 chr1 136149791 136149991 -61045441 - B3 SINE B2 -8 208 5 2 1623 267 240 120 0 chr1 136149993 136150068 -61045364 - Lx8 LINE L1 -753 6720 6637 2 1623 830 175 36 7 chr1 136150069 136150207 -61045225 + B1_Mur2 SINE Alu 1 142 -7 2 1623 1142 65 65 0 chr1 136150227 136150382 -61045050 + B2_Mm1a SINE B2 15 179 -14 2 1623 603 40 0 0 chr1 136150382 136150456 -61044976 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 2 1623 309 194 32 0 chr1 136150458 136150520 -61044912 - RMER15-int LTR ERVL -435 4564 4501 2 1623 237 266 128 0 chr1 136150656 136150765 -61044667 + Charlie13a DNA Charlie 830 952 -562 2 1623 355 257 133 0 chr1 136150814 136150919 -61044513 + PB1D9 SINE Alu 2 120 0 2 1623 232 48 23 23 chr1 136151188 136151231 -61044201 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1623 465 63 16 0 chr1 136151255 136151318 -61044114 - B1_Mus2 SINE Alu 0 147 84 2 1623 3950 72 36 4 chr1 136151734 136152237 -61043195 - MURVY-LTR LTR ERV1 0 519 1 2 1623 321 298 44 30 chr1 136152789 136152924 -61042508 - ORR1E LTR MaLR -222 137 1 2 1623 4814 45 18 13 chr1 136152992 136153363 -61042069 - RLTR1D LTR ERV1 0 605 239 2 1623 3613 18 0 0 chr1 136153363 136153759 -61041673 - MTA_Mm LTR MaLR 0 396 1 2 1623 9352 18 21 1 chr1 136153759 136154835 -61040597 - MTA_Mm-int LTR MaLR 0 1098 1 2 1623 3613 18 0 0 chr1 136154835 136155231 -61040201 - MTA_Mm LTR MaLR 0 396 1 2 1623 4814 45 18 13 chr1 136155231 136155459 -61039973 - RLTR1D LTR ERV1 -367 238 3 2 1623 253 364 0 11 chr1 136155459 136155548 -61039884 + B4A SINE B4 191 278 -14 2 1623 351 0 0 0 chr1 136155556 136155595 -61039837 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1623 35 24 0 0 chr1 136155595 136155637 -61039795 + AT_rich Low_complexity Low_complexity 1 42 0 2 1623 434 230 130 38 chr1 136155792 136155923 -61039509 + MER20 DNA MER1_type 72 214 -5 2 1623 323 308 89 20 chr1 136155944 136156090 -61039342 + L1ME3B LINE L1 5617 5772 -468 2 1623 1501 263 44 64 chr1 136156395 136157398 -61038034 + RMER1B Other Other 8 501 -565 2 1623 3173 201 5 31 chr1 136157398 136158004 -61037428 + RLTR25A LTR ERVK 1 590 -513 2 1623 476 188 12 0 chr1 136157935 136158015 -61037417 + MT2B LTR ERVL 203 283 -318 2 1623 1257 68 0 0 chr1 136158030 136158178 -61037254 - B1_Mus1 SINE Alu 0 148 1 2 1623 534 250 46 0 chr1 136158178 136158286 -61037146 + B1_Mus2 SINE Alu 13 125 -22 2 1623 461 202 0 0 chr1 136158286 136158307 -61037125 + ORR1A3-int LTR MaLR 741 869 -1094 2 1623 282 56 0 0 chr1 136158401 136158437 -61036995 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2 1623 901 203 374 3 chr1 136158440 136158737 -61036695 + RLTR25A LTR ERVK 621 1027 -1 2 1623 4171 160 40 3 chr1 136158748 136159450 -61035982 + RMER1A Other Other 293 1020 -10 2 1623 354 280 73 27 chr1 136159465 136159575 -61035857 + L1ME3B LINE L1 5783 5897 -343 2 1623 1328 138 36 9 chr1 136159664 136159883 -61035549 + URR1B DNA MER1_type 1 225 0 2 1623 256 24 24 24 chr1 136159926 136159968 -61035464 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1623 193 336 168 0 chr1 136159994 136160119 -61035313 - MER5B DNA MER1_type -4 174 29 2 1623 497 271 0 0 chr1 136160170 136160266 -61035166 + B1_Mur2 SINE Alu 2 97 -52 3 1623 185 132 26 0 chr1 136160326 136160364 -61035068 + (CAGG)n Simple_repeat Simple_repeat 3 41 0 3 1623 805 218 27 64 chr1 136160373 136160593 -61034839 + B3 SINE B2 5 216 0 3 1623 271 219 60 12 chr1 136160694 136160777 -61034655 + L1MEd LINE L1 998 1084 -5035 3 1623 256 298 11 0 chr1 136161235 136161329 -61034103 + L1MEg LINE L1 993 1087 -5155 3 1623 836 304 10 59 chr1 136161341 136161648 -61033784 + B4 SINE B4 1 292 0 3 1623 310 348 123 81 chr1 136161742 136162020 -61033412 + L1MEg LINE L1 1184 1481 -4761 3 1623 439 233 206 12 chr1 136162020 136162185 -61033247 + B3A SINE B2 2 198 0 3 1623 310 348 123 81 chr1 136162185 136162435 -61032997 + L1MEg LINE L1 1482 1734 -4508 3 1623 290 184 152 88 chr1 136163532 136163657 -61031775 + L1MEg LINE L1 2195 2327 -3819 3 1623 692 241 14 7 chr1 136163660 136163802 -61031630 + B1_Mur1 SINE Alu 2 144 -5 3 1623 1081 173 294 11 chr1 136164038 136164310 -61031122 + MTD LTR MaLR 3 330 -89 3 1623 719 232 58 26 chr1 136164310 136164500 -61030932 - B3A SINE B2 -1 197 2 3 1623 395 258 211 100 chr1 136164500 136164558 -61030874 + MTD LTR MaLR 317 370 -9 3 1623 271 306 55 35 chr1 136164558 136164758 -61030674 + L1MEg LINE L1 3985 4188 -1958 3 1623 739 208 0 8 chr1 136164759 136164885 -61030547 + B1_Mur1 SINE Alu 12 136 -13 3 1623 447 19 0 0 chr1 136164886 136164938 -61030494 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1623 467 331 79 11 chr1 136164980 136165157 -61030275 + B4A SINE B4 102 290 -2 3 1623 339 308 51 56 chr1 136165212 136165408 -61030024 + L1MEg LINE L1 4152 4346 -1800 3 1623 887 205 201 0 chr1 136165409 136165633 -61029799 + MTEa LTR MaLR 111 379 0 3 1623 1774 218 47 15 chr1 136165701 136166107 -61029325 + MTD LTR MaLR 1 419 0 3 1623 242 250 30 30 chr1 136166109 136166175 -61029257 + MTEb LTR MaLR 301 366 -13 3 1623 743 229 0 14 chr1 136166345 136166491 -61028941 + B1_Mur2 SINE Alu 4 147 -2 3 1623 397 272 89 74 chr1 136166654 136166734 -61028698 + RLTR15 LTR ERVK 45 190 -337 3 1623 4026 145 47 8 chr1 136166734 136167400 -61028032 + RLTR17 LTR ERVK 1 692 0 3 1623 372 322 48 51 chr1 136167400 136167663 -61027769 + RLTR15 LTR ERVK 86 354 -5 3 1623 362 347 49 86 chr1 136167658 136167692 -61027740 + B4A SINE B4 58 90 -202 3 1623 2381 80 114 3 chr1 136167692 136168043 -61027389 + RLTR10 LTR ERVK 1 390 0 3 1623 362 347 49 86 chr1 136168043 136168251 -61027181 + B4A SINE B4 91 291 -1 3 1623 826 272 64 39 chr1 136169381 136169741 -61025691 - MLT1A LTR MaLR -4 370 2 3 1623 617 180 329 0 chr1 136169841 136170002 -61025430 - B3 SINE B2 -1 215 2 3 1623 193 359 13 13 chr1 136170729 136170808 -61024624 - MIRc SINE MIR -113 155 77 3 1623 191 36 36 0 chr1 136170968 136170996 -61024436 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1623 230 262 104 50 chr1 136171106 136171264 -61024168 + MIR3 SINE MIR 43 207 -1 3 1623 1164 168 19 5 chr1 136171960 136172169 -61023263 - URR1B DNA MER1_type 0 225 14 3 1623 209 288 0 0 chr1 136173157 136173216 -61022216 - MIR3 SINE MIR -34 174 116 3 1623 461 271 89 62 chr1 136173221 136173445 -61021987 + MIRb SINE MIR 22 251 -17 3 1623 286 211 179 0 chr1 136173890 136173985 -61021447 - MIR SINE MIR -131 131 20 3 1623 1176 74 0 0 chr1 136174546 136174694 -61020738 + B1_Mus1 SINE Alu 1 148 0 3 1623 318 80 0 0 chr1 136175415 136175465 -61019967 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 3 1623 215 0 0 62 chr1 136175472 136175504 -61019928 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1623 479 339 129 15 chr1 136175509 136175841 -61019591 - L1MEf LINE L1 -3403 2743 2374 3 1623 620 248 64 71 chr1 136175871 136176198 -61019234 - ORR1E LTR MaLR -32 347 1 3 1623 812 307 140 41 chr1 136176208 136177396 -61018036 - L1MEf LINE L1 -3774 2372 1064 3 1623 210 150 0 0 chr1 136177432 136177472 -61017960 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1623 705 64 0 0 chr1 136177474 136177568 -61017864 - U6 snRNA snRNA -13 94 1 3 1623 234 286 162 81 chr1 136177619 136177779 -61017653 + MLT1B LTR MaLR 1 173 -217 3 1623 313 280 32 11 chr1 136177784 136177878 -61017554 + PB1D10 SINE Alu 2 97 -20 3 1623 360 0 0 0 chr1 136177914 136177954 -61017478 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1623 246 289 21 72 chr1 136177995 136178092 -61017340 + MLT1B LTR MaLR 224 315 -75 3 1623 977 228 4 53 chr1 136178238 136178465 -61016967 - B3 SINE B2 0 216 1 3 1623 218 278 93 0 chr1 136178593 136178647 -61016785 - ID4 SINE ID -16 67 9 3 1623 217 213 32 16 chr1 136179147 136179209 -61016223 + GA-rich Low_complexity Low_complexity 3 65 0 3 1623 245 284 0 43 chr1 136180212 136180282 -61015150 + ID4 SINE ID 14 80 -3 3 1623 234 250 17 0 chr1 136180925 136180985 -61014447 - MIR3 SINE MIR -43 165 105 3 1623 200 324 87 19 chr1 136181683 136181787 -61013645 + MIRb SINE MIR 99 209 -59 3 1623 717 158 35 14 chr1 136183156 136183297 -61012135 + B1_Mur3 SINE Alu 1 144 -5 3 1623 372 119 0 0 chr1 136183481 136183540 -61011892 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1624 555 207 18 18 chr1 136183944 136184057 -61011375 - PB1D10 SINE Alu 0 117 5 3 1624 202 208 21 0 chr1 136184640 136184688 -61010744 + (CACCC)n Simple_repeat Simple_repeat 3 51 0 3 1624 4076 34 4 8 chr1 136185230 136185708 -61009724 + L1_Mus1 LINE L1 6092 6567 0 3 1624 360 0 0 0 chr1 136185986 136186026 -61009406 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1624 1884 124 34 97 chr1 136190962 136191311 -61004121 + ORR1A2 LTR MaLR 1 327 0 3 1624 24 0 0 0 chr1 136191665 136191689 -61003743 + AT_rich Low_complexity Low_complexity 1 24 0 3 1624 495 164 133 7 chr1 136191701 136191836 -61003596 - Lx4A LINE L1 0 7058 6907 3 1624 1656 157 45 66 chr1 136191904 136191957 -61003475 + ORR1D1 LTR MaLR 2 54 -320 3 1624 3181 59 13 8 chr1 136191957 136192351 -61003081 - MTA_Mm LTR MaLR 0 396 1 3 1624 1656 157 45 66 chr1 136192351 136192678 -61002754 + ORR1D1 LTR MaLR 55 374 0 3 1624 701 182 7 0 chr1 136192977 136193120 -61002312 + GA-rich Low_complexity Low_complexity 2 145 0 3 1624 950 117 6 12 chr1 136193142 136193306 -61002126 + B2_Mm2 SINE B2 28 190 -5 3 1624 294 29 0 0 chr1 136193311 136193346 -61002086 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 3 1624 201 163 0 0 chr1 136193398 136193447 -61001985 + (CTCA)n Simple_repeat Simple_repeat 2 50 0 3 1624 224 305 181 38 chr1 136196403 136196536 -60998896 + MIRc SINE MIR 23 174 -94 3 1624 501 312 43 25 chr1 136197224 136197385 -60998047 - RSINE1 SINE B4 0 165 2 3 1624 449 329 64 0 chr1 136197428 136197568 -60997864 - RSINE1 SINE B4 -15 150 2 3 1624 21 0 0 0 chr1 136197977 136197998 -60997434 + AT_rich Low_complexity Low_complexity 1 21 0 3 1624 912 212 14 48 chr1 136198255 136198463 -60996969 + B3 SINE B2 3 203 -13 3 1624 1022 103 20 7 chr1 136198574 136198721 -60996711 + B1_Mur4 SINE Alu 1 149 -1 3 1624 235 177 16 16 chr1 136198721 136198784 -60996648 + GA-rich Low_complexity Low_complexity 1 63 0 3 1624 463 345 103 55 chr1 136198927 136199433 -60995999 + CR1_Mam LINE CR1 1539 2068 -136 3 1624 288 0 0 0 chr1 136200040 136200072 -60995360 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1624 324 0 0 0 chr1 136200109 136200145 -60995287 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1624 202 97 32 0 chr1 136200548 136200579 -60994853 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 3 1624 490 265 93 39 chr1 136201190 136201394 -60994038 + MTEa LTR MaLR 1 215 -164 3 1624 196 339 37 136 chr1 136201624 136201815 -60993617 + L2a LINE L2 2958 3129 -297 3 1624 212 296 62 0 chr1 136202626 136202707 -60992725 + MIRb SINE MIR 137 222 -46 3 1624 386 204 48 136 chr1 136202956 136203081 -60992351 + PB1 SINE Alu 13 126 -1 3 1624 252 273 282 0 chr1 136203092 136203115 -60992317 + B1F SINE Alu 3 143 -6 3 1624 367 218 103 0 chr1 136203115 136203202 -60992230 + ID_B1 SINE B4 123 218 -6 3 1624 2704 40 65 0 chr1 136203240 136203565 -60991867 + ORR1A1 LTR MaLR 1 346 0 3 1624 278 278 68 58 chr1 136203628 136203731 -60991701 + MT2B LTR ERVL 155 258 -343 3 1624 653 185 46 8 chr1 136203640 136203771 -60991661 + B1_Mus1 SINE Alu 8 143 -5 3 1624 496 192 10 20 chr1 136203812 136203913 -60991519 + PB1D7 SINE Alu 7 106 -14 3 1624 1017 132 0 14 chr1 136204452 136204598 -60990834 + B1_Mur4 SINE Alu 1 144 -6 3 1624 316 310 63 92 chr1 136204878 136204954 -60990478 - MER102b DNA MER1_type -171 170 92 3 1624 1202 192 5 9 chr1 136204954 136205170 -60990262 + B3 SINE B2 1 215 -1 3 1624 316 310 63 92 chr1 136205170 136205267 -60990165 - MER102b DNA MER1_type -250 91 2 3 1624 284 308 0 0 chr1 136205418 136205483 -60989949 + MTE2b LTR MaLR 35 99 -260 3 1624 1043 215 40 41 chr1 136205495 136205788 -60989644 + MTE2b LTR MaLR 72 362 -17 3 1624 188 378 23 23 chr1 136205956 136206086 -60989346 + L3b LINE CR1 222 351 -131 3 1624 836 175 235 0 chr1 136206581 136206764 -60988668 - URR1A DNA MER1_type 0 226 1 3 1624 543 190 0 10 chr1 136207483 136207584 -60987848 + B1_Mus1 SINE Alu 1 100 -48 3 1624 441 0 0 0 chr1 136210391 136210440 -60984992 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1624 468 0 0 0 chr1 136210777 136210829 -60984603 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1624 247 250 0 0 chr1 136210838 136210902 -60984530 + CT-rich Low_complexity Low_complexity 2 65 0 3 1624 551 263 0 0 chr1 136212084 136212202 -60983230 + B1F2 SINE Alu 23 140 -9 3 1624 198 0 0 0 chr1 136212249 136212271 -60983161 + (TAA)n Simple_repeat Simple_repeat 3 24 0 3 1624 336 260 73 44 chr1 136212290 136212427 -60983005 + ID_B1 SINE B4 79 219 -5 3 1624 343 296 0 0 chr1 136212427 136212508 -60982924 + ID4 SINE ID 2 82 -1 3 1624 393 326 34 0 chr1 136212604 136212751 -60982681 + Lx6 LINE L1 6611 6762 -698 3 1624 456 19 0 0 chr1 136212761 136212814 -60982618 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1624 220 284 0 13 chr1 136213381 136213456 -60981976 + L3b LINE CR1 217 290 -192 3 1624 287 312 26 35 chr1 136215062 136215178 -60980254 + Charlie18a DNA MER1_type 130 244 -98 3 1624 181 224 163 0 chr1 136215429 136215478 -60979954 + MIRc SINE MIR 62 118 -150 3 1624 210 114 22 43 chr1 136216143 136216189 -60979243 + C-rich Low_complexity Low_complexity 3 47 0 3 1624 258 267 0 0 chr1 136216328 136216500 -60978932 + (CCTG)n Simple_repeat Simple_repeat 2 173 0 4 1624 445 195 7 13 chr1 136216537 136216688 -60978744 + (CCTG)n Simple_repeat Simple_repeat 3 152 0 4 1624 300 200 0 0 chr1 136216733 136216803 -60978629 + CT-rich Low_complexity Low_complexity 4 73 0 4 1624 218 276 75 75 chr1 136216812 136216918 -60978514 - PB1D10 SINE Alu -6 111 6 4 1624 234 350 99 52 chr1 136217816 136218178 -60977254 + L3 LINE CR1 4108 4486 -3 4 1624 2933 9 0 0 chr1 136221932 136222252 -60973180 + RLTRETN_Mm LTR ERVK 1 320 -2 4 1624 1006 94 0 14 chr1 136222716 136222856 -60972576 + B1_Mus2 SINE Alu 1 138 -9 4 1624 183 42 0 0 chr1 136222856 136222880 -60972552 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1624 279 0 0 0 chr1 136224686 136224717 -60970715 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1624 423 0 0 0 chr1 136226142 136226189 -60969243 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1624 193 296 55 18 chr1 136227393 136227448 -60967984 + MIRc SINE MIR 41 97 -171 4 1624 1441 39 78 0 chr1 136227527 136227545 -60967887 - B2_Mm1a SINE B2 0 193 176 4 1624 351 0 0 0 chr1 136227545 136227584 -60967848 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 1624 1441 39 78 0 chr1 136227584 136227744 -60967688 - B2_Mm1a SINE B2 -18 175 2 4 1624 202 329 124 57 chr1 136228258 136228435 -60966997 + MIRb SINE MIR 74 262 -6 4 1624 563 189 34 142 chr1 136230201 136230228 -60965204 + B4A SINE B4 66 135 -157 4 1624 1109 44 0 0 chr1 136230228 136230365 -60965067 + B1_Mm SINE Alu 6 142 -5 4 1624 563 189 34 142 chr1 136230365 136230405 -60965027 + B4A SINE B4 136 247 -45 4 1624 489 62 0 0 chr1 136231004 136231069 -60964363 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1624 226 159 0 43 chr1 136231517 136231563 -60963869 + G-rich Low_complexity Low_complexity 1 44 0 4 1624 384 77 0 0 chr1 136233827 136233879 -60961553 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1624 264 263 76 85 chr1 136234554 136234778 -60960654 + RMER17D2 LTR ERVK 165 386 -423 4 1624 854 136 8 8 chr1 136234774 136234907 -60960525 - B1_Mur3 SINE Alu 0 149 17 4 1624 223 335 72 67 chr1 136234955 136234983 -60960449 - B3A SINE B2 -1 197 2 4 1624 548 248 60 84 chr1 136234983 136235150 -60960282 - RSINE1 SINE B4 0 165 3 4 1624 1171 82 0 0 chr1 136235294 136235441 -60959991 + B1_Mus1 SINE Alu 1 147 -1 4 1624 207 0 0 0 chr1 136235448 136235471 -60959961 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1624 204 182 0 0 chr1 136235981 136236025 -60959407 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1624 485 178 425 0 chr1 136236468 136236614 -60958818 - B3 SINE B2 -7 209 2 4 1624 360 0 0 0 chr1 136237058 136237098 -60958334 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1624 457 328 8 0 chr1 136237173 136237298 -60958134 + ID_B1 SINE B4 82 207 -17 4 1624 253 255 0 0 chr1 136237425 136237472 -60957960 + B1_Mus2 SINE Alu 1 47 -100 4 1624 470 161 11 0 chr1 136237476 136237569 -60957863 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1624 207 159 45 0 chr1 136237589 136237633 -60957799 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 1624 464 291 0 0 chr1 136237653 136237756 -60957676 + B3 SINE B2 110 212 -4 4 1624 1494 63 0 10 chr1 136237756 136237948 -60957484 - B2_Mm2 SINE B2 -4 191 2 4 1624 276 245 54 56 chr1 136240067 136240180 -60955252 + L2a LINE L2 3268 3425 -1 4 1624 216 0 0 0 chr1 136241958 136241982 -60953450 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1624 537 169 61 3 chr1 136241988 136242102 -60953330 - B1_Mur4 SINE Alu 0 150 32 4 1624 416 171 24 24 chr1 136243143 136243227 -60952205 + PB1D10 SINE Alu 30 113 -4 4 1624 411 281 123 18 chr1 136243798 136243968 -60951464 + MIRb SINE MIR 51 238 -30 4 1624 4541 10 0 0 chr1 136245162 136245655 -60949777 + MT2_Mm LTR ERVL 1 493 0 4 1624 213 39 0 0 chr1 136246417 136246443 -60948989 + (CAT)n Simple_repeat Simple_repeat 1 26 0 4 1624 1038 168 12 0 chr1 136247383 136247556 -60947876 + ORR1C1 LTR MaLR 197 371 -7 4 1624 811 282 53 45 chr1 136247626 136247871 -60947561 - B4A SINE B4 -2 290 44 4 1624 1028 252 179 19 chr1 136247998 136248317 -60947115 + MLT1A1 LTR MaLR 39 408 0 4 1624 893 233 23 60 chr1 136248350 136248545 -60946887 + B3 SINE B2 6 191 -25 4 1624 727 221 0 39 chr1 136248545 136248700 -60946732 + B1_Mur2 SINE Alu 1 149 0 4 1624 893 233 23 60 chr1 136248700 136248719 -60946713 + B3 SINE B2 192 212 -4 4 1624 22 0 0 0 chr1 136248882 136248904 -60946528 + AT_rich Low_complexity Low_complexity 1 22 0 4 1624 966 96 81 0 chr1 136252407 136252543 -60942889 - B1_Mus2 SINE Alu 0 147 1 4 1624 610 267 13 26 chr1 136252698 136252852 -60942580 - B4A SINE B4 0 292 141 4 1624 417 333 32 0 chr1 136252974 136253097 -60942335 - B3A SINE B2 -34 164 38 4 1624 222 91 0 0 chr1 136253307 136253340 -60942092 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1624 1148 75 0 7 chr1 136253341 136253489 -60941943 - B1_Mus1 SINE Alu 0 148 2 4 1624 1586 37 16 0 chr1 136253548 136253738 -60941694 + B2_Mm1t SINE B2 1 193 0 4 1624 212 231 0 0 chr1 136253784 136253818 -60941614 + B3 SINE B2 1 34 -182 4 1624 864 207 166 5 chr1 136253818 136254017 -60941415 - MTD LTR MaLR 0 419 189 4 1624 513 276 35 7 chr1 136254034 136254176 -60941256 - RSINE1 SINE B4 -16 149 4 4 1624 909 202 24 0 chr1 136254177 136254345 -60941087 - MTD LTR MaLR -235 184 13 4 1624 333 169 28 0 chr1 136254377 136254448 -60940984 + B3 SINE B2 144 216 0 4 1624 607 261 116 14 chr1 136254604 136254817 -60940615 - ID_B1 SINE B4 -4 220 1 4 1624 654 200 92 0 chr1 136254962 136255092 -60940340 - B1_Mur2 SINE Alu -7 142 1 4 1624 607 244 55 0 chr1 136255184 136255348 -60940084 - B3 SINE B2 -35 181 9 4 1624 399 221 82 55 chr1 136255370 136255480 -60939952 - ID_B1 SINE B4 0 224 112 4 1624 487 291 75 0 chr1 136255644 136255778 -60939654 + RSINE1 SINE B4 3 146 -19 4 1624 21 0 0 0 chr1 136255836 136255857 -60939575 + AT_rich Low_complexity Low_complexity 1 21 0 4 1624 844 132 70 0 chr1 136256035 136256164 -60939268 + B1_Mus2 SINE Alu 1 138 -9 4 1624 314 277 125 6 chr1 136256175 136256335 -60939097 + L1M4 LINE L1 5528 5706 -472 4 1624 630 208 7 78 chr1 136256441 136256582 -60938850 + B1_Mur3 SINE Alu 19 149 0 4 1624 296 161 0 16 chr1 136256582 136256645 -60938787 + A-rich Low_complexity Low_complexity 2 63 0 4 1624 594 233 80 108 chr1 136256663 136256875 -60938557 + B3 SINE B2 11 216 0 4 1624 1456 69 37 0 chr1 136257036 136257224 -60938208 + B2_Mm2 SINE B2 1 195 0 4 1624 587 176 202 0 chr1 136257749 136257868 -60937564 - B1_Mur2 SINE Alu -4 145 3 4 1624 287 191 42 11 chr1 136258252 136258347 -60937085 + (CCCCG)n Simple_repeat Simple_repeat 3 100 0 4 1624 362 180 250 0 chr1 136258914 136259014 -60936418 + ID_B1 SINE B4 93 217 -7 4 1624 483 340 121 21 chr1 136259273 136259646 -60935786 + Charlie13b DNA Charlie 79 488 -24 4 1624 285 330 45 163 chr1 136259925 136260107 -60935325 + B4A SINE B4 1 166 -126 4 1624 369 0 0 0 chr1 136260107 136260148 -60935284 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1624 285 330 45 163 chr1 136260148 136260229 -60935203 + B4A SINE B4 167 233 -59 4 1624 507 221 76 8 chr1 136260568 136260700 -60934732 + B1_Mur2 SINE Alu 1 141 -8 4 1624 217 333 16 0 chr1 136260750 136260813 -60934619 + B4A SINE B4 80 143 -149 4 1624 417 263 95 0 chr1 136260766 136260861 -60934571 + PB1D10 SINE Alu 12 115 -2 4 1624 316 197 93 53 chr1 136260861 136260936 -60934496 + ID4 SINE ID 2 79 -4 4 1624 634 146 124 51 chr1 136261139 136261276 -60934156 - B1_Mus1 SINE Alu 0 148 2 4 1624 2939 157 13 23 chr1 136261840 136262362 -60933070 - RLTR28 LTR ERVL -7 517 1 4 1624 254 364 133 0 chr1 136262411 136262576 -60932856 + MIR SINE MIR 28 214 -48 4 1624 1236 34 0 7 chr1 136262608 136262756 -60932676 - B1_Mus2 SINE Alu 0 147 1 4 1624 700 254 159 6 chr1 136262939 136263121 -60932311 + B3 SINE B2 1 210 -6 4 1624 931 79 8 8 chr1 136263333 136263461 -60931971 + L1_Mur2 LINE L1 5440 5567 -310 4 1624 296 261 15 0 chr1 136263462 136263527 -60931905 - RMER12B LTR ERVK 0 1404 1339 4 1624 1617 42 5 0 chr1 136263706 136263896 -60931536 - B2_Mm1t SINE B2 -2 191 1 4 1624 459 0 0 0 chr1 136264041 136264092 -60931340 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1624 1084 206 87 135 chr1 136264093 136264230 -60931202 + RLTR21 LTR ERVK 1128 1246 -326 4 1624 273 118 0 0 chr1 136264230 136264281 -60931151 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 4 1624 1084 206 87 135 chr1 136264281 136264323 -60931109 + RLTR21 LTR ERVK 1247 1304 -268 4 1624 414 0 0 0 chr1 136264323 136264369 -60931063 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1624 1084 206 87 135 chr1 136264369 136264502 -60930930 + RLTR21 LTR ERVK 1305 1430 -142 4 1624 1617 52 0 0 chr1 136264502 136264695 -60930737 + B2_Mm1t SINE B2 1 193 0 4 1624 1084 206 87 135 chr1 136264695 136264750 -60930682 + RLTR21 LTR ERVK 1431 1479 -93 4 1624 3824 136 94 43 chr1 136264760 136265450 -60929982 + Lx5 LINE L1 6326 7050 0 4 1624 2705 110 90 52 chr1 136266031 136266531 -60928901 + MURVY-LTR LTR ERV1 1 519 0 4 1624 320 219 59 35 chr1 136266593 136266689 -60928743 + B1F SINE Alu 6 103 -46 4 1624 1485 238 118 34 chr1 136266708 136267183 -60928249 + RMER15 LTR ERVL 61 575 0 4 1624 684 230 29 0 chr1 136267246 136267385 -60928047 - B1_Mm SINE Alu -2 145 3 4 1624 1542 295 60 81 chr1 136267399 136267424 -60928008 + MTEb-int LTR MaLR 820 843 -737 4 1624 3374 92 55 70 chr1 136267424 136267951 -60927481 - MURVY-LTR LTR ERV1 0 519 1 4 1624 1542 295 60 81 chr1 136267951 136268119 -60927313 + MTEb-int LTR MaLR 844 992 -588 4 1624 1045 191 20 5 chr1 136268119 136268319 -60927113 - B3 SINE B2 -9 207 5 4 1624 1542 295 60 81 chr1 136268319 136268678 -60926754 + MTEb-int LTR MaLR 993 1361 -219 4 1624 994 146 0 0 chr1 136268683 136268827 -60926605 - B1_Mur4 SINE Alu -1 149 6 4 1624 742 250 113 129 chr1 136268913 136269407 -60926025 - RLTR12B LTR ERVK -25 503 1 4 1624 666 101 0 0 chr1 136269410 136269519 -60925913 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1624 225 0 0 0 chr1 136269519 136269544 -60925888 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1624 369 159 63 0 chr1 136269544 136269607 -60925825 - B1_Mur4 SINE Alu -10 140 74 5 1624 542 264 34 74 chr1 136269626 136269658 -60925774 + MTEb-int LTR MaLR 1383 1415 -165 4 1624 273 57 0 0 chr1 136269664 136269699 -60925733 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1624 1075 112 0 0 chr1 136269699 136269835 -60925597 - B1_Mus2 SINE Alu -8 139 4 5 1624 542 264 34 74 chr1 136269835 136269907 -60925525 + MTEb-int LTR MaLR 1416 1481 -99 4 1624 216 0 0 0 chr1 136269907 136269931 -60925501 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1624 542 264 34 74 chr1 136269931 136270001 -60925431 + MTEb-int LTR MaLR 1482 1551 -29 4 1624 293 316 63 133 chr1 136269985 136270387 -60925045 + MTEb LTR MaLR 9 370 0 4 1624 715 206 16 0 chr1 136270487 136270613 -60924819 - ID_B1 SINE B4 -6 218 91 5 1624 248 305 39 96 chr1 136270519 136270675 -60924757 - MT2B LTR ERVL -341 260 114 5 1624 541 243 136 37 chr1 136270687 136270728 -60924704 - L1M4 LINE L1 -511 5663 5606 5 1624 402 237 17 34 chr1 136270728 136270846 -60924586 - PB1D10 SINE Alu -1 116 1 5 1624 541 243 136 37 chr1 136270846 136271018 -60924414 - L1M4 LINE L1 -569 5605 5429 5 1624 900 289 56 48 chr1 136271078 136271347 -60924085 - B4A SINE B4 -5 287 17 5 1624 649 246 24 103 chr1 136271508 136271721 -60923711 + B3A SINE B2 2 197 -1 5 1624 878 169 7 13 chr1 136271745 136271895 -60923537 + B1_Mur4 SINE Alu 1 149 -1 5 1624 249 231 45 30 chr1 136272084 136272151 -60923281 + RMER5 LTR ERV1 70 137 -397 5 1624 1089 48 14 0 chr1 136272171 136272316 -60923116 - B1_Mus1 SINE Alu 0 148 2 5 1624 617 259 39 87 chr1 136272316 136272380 -60923052 - B4 SINE B4 -212 80 27 5 1624 1258 230 76 9 chr1 136272359 136272675 -60922757 + RMER5 LTR ERV1 183 519 -15 5 1624 1327 121 304 42 chr1 136272685 136273010 -60922422 + RMER20B LTR ERVK 218 627 0 5 1624 634 156 39 47 chr1 136273010 136273117 -60922315 + B1_Mus2 SINE Alu 42 147 0 5 1624 892 177 0 13 chr1 136273819 136273968 -60921464 - B1_Mur1 SINE Alu -1 148 2 5 1624 401 299 0 0 chr1 136274459 136274554 -60920878 + B3A SINE B2 1 95 -103 5 1624 766 161 90 7 chr1 136274554 136274698 -60920734 + RLTR30 LTR ERV1 1 156 -223 5 1624 1141 200 74 74 chr1 136275031 136275328 -60920104 + RLTR30 LTR ERV1 64 360 -19 5 1624 280 258 66 22 chr1 136275339 136275430 -60920002 + B3A SINE B2 91 185 -13 5 1624 462 267 0 40 chr1 136275474 136275599 -60919833 + PB1D9 SINE Alu 1 120 0 5 1624 818 128 83 0 chr1 136276021 136276177 -60919255 - Lx LINE L1 0 6654 6486 5 1624 441 0 0 0 chr1 136276187 136276236 -60919196 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1624 1178 54 0 33 chr1 136276262 136276414 -60919018 - B1_Mus2 SINE Alu 0 147 1 5 1624 243 0 0 0 chr1 136276433 136276460 -60918972 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1624 2458 61 42 12 chr1 136276555 136276885 -60918547 - L1_Mus3 LINE L1 0 6638 6299 5 1624 702 231 9 16 chr1 136277175 136277336 -60918096 + ID_B1 SINE B4 70 223 -69 5 1624 896 264 80 42 chr1 136277590 136278015 -60917417 + RLTR11B LTR ERVK 1 499 -29 5 1624 288 238 148 0 chr1 136278594 136278695 -60916737 + PB1D10 SINE Alu 1 116 -1 5 1624 444 121 0 0 chr1 136279213 136279279 -60916153 - RMER19B LTR ERVK -735 167 102 5 1624 698 216 21 7 chr1 136279283 136279423 -60916009 - B1_Mur3 SINE Alu -7 142 1 5 1624 318 250 9 41 chr1 136279426 136279536 -60915896 - ID4_ SINE ID -40 112 4 5 1624 243 204 82 0 chr1 136279560 136279609 -60915823 - B1F SINE Alu 0 149 97 5 1624 196 100 24 24 chr1 136280097 136280138 -60915294 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 5 1624 311 321 0 23 chr1 136280196 136280282 -60915150 - B3 SINE B2 -90 126 43 5 1624 333 0 0 0 chr1 136280282 136280319 -60915113 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 1624 331 140 0 69 chr1 136280333 136280401 -60915031 - B2_Mm2 SINE B2 -107 109 47 5 1624 1252 113 11 0 chr1 136280466 136280643 -60914789 - B2_Mm1t SINE B2 -14 179 1 5 1624 419 185 21 11 chr1 136280675 136280768 -60914664 + MTEb LTR MaLR 286 379 0 5 1624 308 323 14 112 chr1 136280987 136281130 -60914302 + L1M4 LINE L1 4891 5019 -1127 5 1624 252 223 18 18 chr1 136281141 136281255 -60914177 + GA-rich Low_complexity Low_complexity 2 115 0 5 1624 2002 158 26 60 chr1 136281255 136281275 -60914157 - ORR1D1 LTR MaLR 0 374 361 5 1624 2199 155 7 38 chr1 136281275 136281697 -60913735 + RLTR9E LTR ERVK 1 409 0 5 1624 2002 158 26 60 chr1 136281697 136282061 -60913371 - ORR1D1 LTR MaLR -14 360 3 5 1624 1094 208 18 46 chr1 136282925 136283142 -60912290 + B3 SINE B2 1 211 -5 5 1624 2903 158 38 8 chr1 136283218 136283721 -60911711 - RLTR11A LTR ERVK 0 528 11 5 1624 264 217 0 0 chr1 136284085 136284131 -60911301 - RSINE1 SINE B4 -61 104 59 5 1624 980 149 6 0 chr1 136285464 136285638 -60909794 + CT-rich Low_complexity Low_complexity 4 178 0 5 1624 226 158 0 0 chr1 136285638 136285676 -60909756 - PB1D9 SINE Alu -74 46 9 5 1624 293 157 226 12 chr1 136287628 136287712 -60907720 + MTC LTR MaLR 1 102 -319 5 1624 585 168 0 32 chr1 136288058 136288170 -60907262 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 1624 1239 188 80 95 chr1 136288170 136288569 -60906863 - RLTR9C LTR ERVK 0 393 1 5 1624 585 168 0 32 chr1 136288569 136288641 -60906791 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1624 510 184 17 17 chr1 136288655 136288832 -60906600 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1624 519 176 0 43 chr1 136288888 136289072 -60906360 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 1624 354 258 23 77 chr1 136289114 136289244 -60906188 - ID4_ SINE ID -20 132 10 5 1624 600 197 82 0 chr1 136289306 136289428 -60906004 + B1_Mur3 SINE Alu 6 137 -12 5 1624 888 93 0 41 chr1 136289428 136289597 -60905835 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 5 1624 203 229 16 0 chr1 136289738 136289799 -60905633 + CT-rich Low_complexity Low_complexity 1 62 0 5 1624 230 267 23 15 chr1 136289812 136289945 -60905487 + A-rich Low_complexity Low_complexity 4 137 0 5 1624 534 264 43 70 chr1 136290036 136290223 -60905209 - B3A SINE B2 -16 182 1 5 1624 232 233 288 0 chr1 136290272 136290345 -60905087 + LTR40a LTR ERVL 106 199 -320 5 1624 343 321 115 76 chr1 136290332 136290646 -60904786 + LTR40a LTR ERVL 59 384 -135 5 1624 462 209 53 14 chr1 136290862 136290993 -60904439 + B3 SINE B2 52 198 0 5 1624 24 32 0 0 chr1 136290993 136291024 -60904408 + AT_rich Low_complexity Low_complexity 1 31 0 5 1624 723 250 75 80 chr1 136291071 136291258 -60904174 + B3 SINE B2 5 190 -5 5 1624 974 177 113 10 chr1 136291267 136291461 -60903971 + B3 SINE B2 1 214 -2 5 1624 207 0 0 0 chr1 136291570 136291593 -60903839 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1624 276 30 0 0 chr1 136291593 136291625 -60903807 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1624 276 280 9 74 chr1 136291701 136291809 -60903623 + L1ME1 LINE L1 6007 6107 -72 5 1624 761 190 35 0 chr1 136292512 136292654 -60902778 + B1_Mus1 SINE Alu 1 147 -1 5 1624 368 342 47 31 chr1 136292675 136292868 -60902564 + B4A SINE B4 35 230 -62 5 1624 784 230 7 0 chr1 136292869 136293004 -60902428 + B1_Mus2 SINE Alu 2 137 -10 5 1624 543 291 21 129 chr1 136293004 136293101 -60902331 + B4A SINE B4 95 292 0 5 1624 189 94 0 0 chr1 136293449 136293481 -60901951 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 5 1624 763 85 246 0 chr1 136293481 136293599 -60901833 - B1_Mus1 SINE Alu 0 148 2 5 1624 664 231 94 39 chr1 136293921 136294101 -60901331 + B3A SINE B2 1 190 -8 5 1624 562 266 28 14 chr1 136294115 136294260 -60901172 + B4 SINE B4 84 230 -62 5 1624 723 52 0 0 chr1 136294294 136294390 -60901042 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1624 1569 57 5 0 chr1 136294736 136294928 -60900504 - B2_Mm1a SINE B2 0 193 1 5 1624 218 326 75 21 chr1 136295405 136295425 -60900007 + B4 SINE B4 67 165 -127 5 1624 407 189 14 0 chr1 136295425 136295499 -60899933 + 4.5SRNA scRNA scRNA 1 75 -19 5 1624 353 228 63 0 chr1 136295526 136295605 -60899827 + B3 SINE B2 129 212 -4 5 1624 371 162 232 119 chr1 136296346 136296393 -60899039 - B3 SINE B2 -2 214 153 5 1624 201 94 0 0 chr1 136296393 136296425 -60899007 + (TATG)n Simple_repeat Simple_repeat 4 35 0 5 1624 371 162 232 119 chr1 136296425 136296545 -60898887 - B3 SINE B2 -37 179 1 5 1624 2884 9 3 0 chr1 136296652 136296973 -60898459 + RLTRETN_Mm LTR ERVK 1 322 0 5 1624 41411 28 3 9 chr1 136296973 136301847 -60893585 + MMETn-int LTR ERVK 1 4844 0 5 1624 2884 9 3 0 chr1 136301847 136302168 -60893264 + RLTRETN_Mm LTR ERVK 1 322 0 5 1624 218 209 239 56 chr1 136303754 136303825 -60891607 + B4A SINE B4 2 85 -207 5 1624 344 307 0 26 chr1 136305336 136305453 -60889979 + ID_B1 SINE B4 81 194 -30 5 1624 351 322 50 44 chr1 136305559 136305718 -60889714 - MIRb SINE MIR -89 179 20 5 1624 420 198 63 90 chr1 136305780 136305891 -60889541 - PB1D9 SINE Alu 0 120 13 5 1624 227 301 19 123 chr1 136305798 136305904 -60889528 - ID_B1 SINE B4 -49 175 81 5 1624 737 247 37 6 chr1 136306428 136306591 -60888841 + B3 SINE B2 48 215 -1 5 1624 1397 95 16 0 chr1 136306601 136306790 -60888642 + B2_Mm2 SINE B2 1 192 -3 5 1624 414 0 0 0 chr1 136308152 136308198 -60887234 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1624 901 200 58 39 chr1 136308928 136309136 -60886296 - B3 SINE B2 0 216 5 5 1624 297 0 0 0 chr1 136309232 136309265 -60886167 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1624 212 0 36 0 chr1 136309332 136309360 -60886072 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1624 1123 80 0 0 chr1 136309360 136309497 -60885935 - B1_Mm SINE Alu -10 137 1 5 1624 182 297 93 13 chr1 136309663 136309738 -60885694 - L2b LINE L2 -14 3361 3281 5 1624 217 329 12 47 chr1 136309955 136310041 -60885391 - MIRb SINE MIR -151 117 35 5 1624 231 181 301 14 chr1 136310272 136310345 -60885087 + B1_Mur4 SINE Alu 57 150 0 5 1624 1097 70 28 14 chr1 136310385 136310529 -60884903 + B1_Mus2 SINE Alu 1 146 -1 5 1624 32 0 0 0 chr1 136310557 136310589 -60884843 + AT_rich Low_complexity Low_complexity 1 32 0 6 1624 1364 85 5 11 chr1 136310605 136310795 -60884637 - B2_Mm2 SINE B2 -6 189 1 6 1624 313 294 91 16 chr1 136311073 136311194 -60884238 + MER105 DNA DNA 47 176 -28 6 1624 481 297 0 18 chr1 136311441 136311554 -60883878 + PB1D10 SINE Alu 7 117 0 6 1624 334 186 65 17 chr1 136311554 136311654 -60883778 + B1_Mus2 SINE Alu 7 142 -5 6 1624 21 0 0 0 chr1 136312119 136312140 -60883292 + GC_rich Low_complexity Low_complexity 1 21 0 6 1624 843 168 7 40 chr1 136313718 136313867 -60881565 + B1_Mus1 SINE Alu 3 146 -2 6 1624 376 238 48 0 chr1 136313998 136314082 -60881350 - B3 SINE B2 -127 89 2 6 1624 198 0 0 0 chr1 136314113 136314135 -60881297 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1624 672 213 41 28 chr1 136314136 136314281 -60881151 - B1_Mus1 SINE Alu 0 148 2 6 1625 555 267 7 30 chr1 136314977 136315112 -60880320 + B1F1 SINE Alu 13 144 -5 6 1625 192 175 0 48 chr1 136316331 136316373 -60879059 + L3 LINE CR1 2796 2835 -1654 6 1625 534 57 0 0 chr1 136317031 136317101 -60878331 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1625 320 309 90 12 chr1 136317174 136317341 -60878091 - Ricksha_c DNA MuDR -1145 903 724 6 1625 849 168 7 34 chr1 136317414 136317562 -60877870 - B1_Mur1 SINE Alu -1 148 5 6 1625 767 248 89 0 chr1 136317565 136317767 -60877665 - MLT2B3 LTR ERVL -333 221 2 6 1625 291 336 96 30 chr1 136317837 136317972 -60877460 + LTR40b LTR ERVL 90 233 -229 6 1625 676 213 20 68 chr1 136318628 136318774 -60876658 + B1_Mur1 SINE Alu 1 139 -10 6 1625 204 220 24 35 chr1 136319035 136319120 -60876312 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 6 1625 297 75 0 0 chr1 136319189 136319229 -60876203 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 1625 1129 66 0 0 chr1 136319229 136319366 -60876066 - B1_Mus1 SINE Alu -9 139 3 6 1625 628 226 48 7 chr1 136320044 136320191 -60875241 + RSINE1 SINE B4 8 160 -5 6 1625 21 71 0 0 chr1 136320251 136320293 -60875139 + AT_rich Low_complexity Low_complexity 1 42 0 6 1625 22 35 0 0 chr1 136320906 136320935 -60874497 + AT_rich Low_complexity Low_complexity 1 29 0 6 1625 408 162 36 13 chr1 136321583 136321686 -60873746 + B1_Mur1 SINE Alu 9 128 -22 6 1625 240 319 41 41 chr1 136321800 136321921 -60873511 - IAPEY2_LTR LTR ERVK -68 289 169 6 1625 942 217 21 0 chr1 136321978 136322167 -60873265 + ID_B1 SINE B4 30 222 -2 6 1625 455 201 486 0 chr1 136322172 136322316 -60873116 + B3 SINE B2 2 215 -1 6 1625 24 0 0 0 chr1 136323252 136323276 -60872156 + AT_rich Low_complexity Low_complexity 1 24 0 6 1625 1263 81 10 88 chr1 136323303 136323507 -60871925 + B2_Mm2 SINE B2 7 194 -1 6 1625 646 205 0 0 chr1 136323524 136323636 -60871796 + PB1 SINE Alu 11 122 -5 6 1625 442 270 11 0 chr1 136323776 136323865 -60871567 + RSINE1 SINE B4 13 102 -63 6 1625 418 286 119 0 chr1 136323949 136324075 -60871357 + B1F2 SINE Alu 2 142 -7 6 1625 491 250 92 0 chr1 136324167 136324287 -60871145 - ID_B1 SINE B4 -14 210 80 6 1625 556 231 0 0 chr1 136324323 136324431 -60871001 - B1_Mur4 SINE Alu -42 108 1 6 1625 217 245 114 105 chr1 136324841 136324872 -60870560 + PB1D10 SINE Alu 1 29 -88 6 1625 1270 187 0 4 chr1 136324872 136325098 -60870334 - URR1B DNA MER1_type 0 225 1 6 1625 217 245 114 105 chr1 136325098 136325180 -60870252 + PB1D10 SINE Alu 30 115 -2 6 1625 358 239 70 44 chr1 136325602 136325716 -60869716 + PB1D7 SINE Alu 1 117 -3 6 1625 1668 31 0 0 chr1 136325786 136325977 -60869455 - B2_Mm1a SINE B2 -1 192 2 6 1625 1000 204 44 39 chr1 136326124 136326328 -60869104 - B3 SINE B2 -4 212 8 6 1625 183 114 0 0 chr1 136326348 136326383 -60869049 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1625 711 98 10 0 chr1 136326384 136326486 -60868946 - B1_Mus2 SINE Alu 0 147 45 6 1625 418 298 80 28 chr1 136326486 136326559 -60868873 - ID_B1 SINE B4 0 223 40 6 1625 929 210 44 15 chr1 136326737 136326940 -60868492 - Lx8 LINE L1 -155 7318 7110 6 1625 395 268 116 0 chr1 136326982 136327094 -60868338 - B3A SINE B2 -72 126 2 6 1625 333 0 0 0 chr1 136327210 136327247 -60868185 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 1625 690 199 51 14 chr1 136327279 136327417 -60868015 - B1_Mur1 SINE Alu 0 149 7 6 1625 489 259 26 59 chr1 136327281 136327433 -60867999 - ID_B1 SINE B4 0 224 78 6 1625 309 360 19 39 chr1 136328913 136329069 -60866363 + Tigger12c DNA MER2_type 7 159 -575 6 1625 447 304 9 0 chr1 136329120 136329235 -60866197 + ID_B1 SINE B4 12 127 -97 6 1625 910 158 14 0 chr1 136329289 136329435 -60865997 - B1_Mur4 SINE Alu 0 150 3 6 1625 610 216 16 109 chr1 136329435 136329480 -60865952 - ID_B1 SINE B4 -1 222 50 6 1625 1038 187 58 72 chr1 136329678 136330042 -60865390 + RLTRETN_Mm LTR ERVK 1 409 0 6 1625 353 224 122 0 chr1 136330335 136330442 -60864990 + PB1D9 SINE Alu 1 120 0 6 1625 459 229 42 0 chr1 136330659 136330755 -60864677 - ID_B1 SINE B4 -39 185 86 6 1625 736 137 145 0 chr1 136330860 136330984 -60864448 - B1_Mur3 SINE Alu -7 142 1 6 1625 3993 89 44 12 chr1 136331464 136332030 -60863402 - MT2B2 LTR ERVL 0 584 1 6 1625 798 227 91 5 chr1 136332067 136332266 -60863166 - B3 SINE B2 0 216 1 6 1625 834 180 36 0 chr1 136332325 136332464 -60862968 - B1_Mur1 SINE Alu 0 149 6 6 1625 506 227 129 0 chr1 136332570 136332702 -60862730 - B1_Mur3 SINE Alu 0 149 1 6 1625 198 103 0 0 chr1 136332789 136332818 -60862614 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1625 1210 49 0 0 chr1 136333653 136333795 -60861637 - B1_Mm SINE Alu -5 142 1 6 1625 722 191 250 0 chr1 136334008 136334176 -60861256 + B3 SINE B2 1 210 -6 6 1625 649 197 35 28 chr1 136334340 136334481 -60860951 + B1_Mus2 SINE Alu 1 142 -5 6 1625 691 239 6 6 chr1 136334564 136334724 -60860708 - B3A SINE B2 -38 160 1 6 1625 1836 169 48 6 chr1 136334984 136335341 -60860091 + ORR1C1 LTR MaLR 1 372 -6 6 1625 388 225 164 16 chr1 136335390 136335512 -60859920 - B1F1 SINE Alu 0 149 10 6 1625 500 252 32 0 chr1 136335529 136335652 -60859780 - B1_Mur2 SINE Alu 0 149 23 6 1625 22 56 0 0 chr1 136335758 136335794 -60859638 + AT_rich Low_complexity Low_complexity 1 36 0 6 1625 355 280 15 81 chr1 136335850 136335986 -60859446 + ID_B1 SINE B4 22 148 -76 6 1625 974 104 0 43 chr1 136335995 136336136 -60859296 + B1_Mus2 SINE Alu 1 135 -12 6 1625 252 257 0 0 chr1 136337435 136337505 -60857927 - RSINE1 SINE B4 -11 154 85 6 1625 411 21 0 0 chr1 136337660 136337708 -60857724 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1625 405 271 22 0 chr1 136337740 136337848 -60857584 - B3A SINE B2 -105 111 1 6 1625 28 0 0 0 chr1 136338175 136338203 -60857229 + AT_rich Low_complexity Low_complexity 1 28 0 6 1625 1511 50 0 6 chr1 136338220 136338402 -60857030 - B2_Mm2 SINE B2 -14 181 1 6 1625 510 219 70 39 chr1 136338402 136338530 -60856902 - B1_Mus2 SINE Alu -13 134 3 6 1625 3483 37 0 128 chr1 136338555 136339055 -60856377 - RLTR10C LTR ERVK 0 436 1 6 1625 689 194 19 6 chr1 136339055 136339211 -60856221 - ORR1C2 LTR MaLR -3 381 224 6 1625 1121 95 0 0 chr1 136339775 136339923 -60855509 - B1_Mus1 SINE Alu 0 148 1 6 1625 280 256 0 58 chr1 136339958 136340045 -60855387 - B4A SINE B4 -44 248 167 6 1625 731 11 11 0 chr1 136340118 136340206 -60855226 + (TTTCC)n Simple_repeat Simple_repeat 1 89 0 6 1625 528 122 0 0 chr1 136340208 136340290 -60855142 + (TC)n Simple_repeat Simple_repeat 2 83 0 6 1625 376 57 0 0 chr1 136341706 136341759 -60853673 - B1_Mus2 SINE Alu -8 139 87 6 1625 23 68 0 0 chr1 136342364 136342408 -60853024 + AT_rich Low_complexity Low_complexity 1 44 0 6 1625 1376 79 10 16 chr1 136342512 136342704 -60852728 - B2_Mm1t SINE B2 -1 192 2 6 1625 748 194 29 0 chr1 136342738 136342877 -60852555 + B1_Mur3 SINE Alu 1 143 -6 6 1625 405 250 20 20 chr1 136342945 136343043 -60852389 - RSINE1 SINE B4 -65 100 3 6 1625 1027 171 85 10 chr1 136343171 136343372 -60852060 - RLTR33 LTR ERVK -110 568 353 6 1625 213 121 0 0 chr1 136343417 136343450 -60851982 + (GAA)n Simple_repeat Simple_repeat 2 34 0 6 1625 180 0 0 0 chr1 136343682 136343702 -60851730 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 6 1625 2030 91 54 42 chr1 136343834 136343948 -60851484 + ORR1A1 LTR MaLR 1 115 -231 6 1625 1111 57 0 41 chr1 136343948 136344095 -60851337 + B1_Mus2 SINE Alu 1 141 -6 6 1625 2030 91 54 42 chr1 136344095 136344314 -60851118 + ORR1A1 LTR MaLR 116 338 -8 6 1625 1198 126 222 11 chr1 136344343 136344609 -60850823 - RLTR33 LTR ERVK -356 322 1 6 1625 1344 141 81 56 chr1 136344863 136345079 -60850353 + RMER16 LTR ERVK 242 473 -60 6 1625 1636 42 0 5 chr1 136345079 136345272 -60850160 - B2_Mm1t SINE B2 0 193 2 6 1625 1344 141 81 56 chr1 136345272 136345340 -60850092 + RMER16 LTR ERVK 474 533 0 6 1625 575 229 0 0 chr1 136345353 136345458 -60849974 - RSINE1 SINE B4 -45 120 16 6 1625 198 0 0 0 chr1 136345523 136345545 -60849887 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1625 737 240 0 0 chr1 136345623 136345769 -60849663 + B1_Mur1 SINE Alu 3 148 -1 6 1625 782 278 124 32 chr1 136346061 136346399 -60849033 + MTEa LTR MaLR 11 379 0 6 1625 747 235 108 15 chr1 136346456 136346659 -60848773 - ID_B1 SINE B4 -1 223 2 6 1625 273 98 0 0 chr1 136346679 136346720 -60848712 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 7 1625 861 163 51 61 chr1 136346937 136347133 -60848299 + B2_Mm2 SINE B2 2 195 0 7 1625 1221 54 0 0 chr1 136347138 136347285 -60848147 + B1_Mus2 SINE Alu 1 147 0 7 1625 1036 204 15 30 chr1 136347526 136347728 -60847704 + B3 SINE B2 3 201 -15 7 1625 1894 135 79 35 chr1 136347893 136347938 -60847494 - ORR1B1 LTR MaLR -10 384 350 7 1625 1426 53 10 35 chr1 136347938 136348135 -60847297 - B2_Mm2 SINE B2 -3 192 1 7 1625 1894 135 79 35 chr1 136348135 136348457 -60846975 - ORR1B1 LTR MaLR -45 349 1 7 1625 1038 55 0 52 chr1 136348935 136349089 -60846343 - B1_Mm SINE Alu 0 147 2 7 1625 413 190 46 123 chr1 136349089 136349157 -60846275 - MT2B LTR ERVL -431 153 94 7 1625 1337 91 11 0 chr1 136349245 136349421 -60846011 + B2_Mm1t SINE B2 2 179 -14 7 1625 353 91 346 48 chr1 136349482 136349586 -60845846 + B2_Mm2 SINE B2 47 181 -14 7 1625 655 101 48 48 chr1 136349896 136350063 -60845369 + CT-rich Low_complexity Low_complexity 4 170 0 7 1625 840 152 61 0 chr1 136350076 136350208 -60845224 - B1_Mus1 SINE Alu -6 142 3 7 1625 233 289 60 17 chr1 136350938 136351054 -60844378 - LTR16B LTR ERVL 0 463 343 7 1625 368 188 0 0 chr1 136351079 136351143 -60844289 - B3 SINE B2 -9 207 144 7 1625 261 141 51 101 chr1 136351150 136351229 -60844203 + MERVL_2A-int LTR ERVL 4913 4987 -774 7 1625 546 16 0 0 chr1 136352995 136353058 -60842374 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1625 677 151 34 0 chr1 136353639 136353758 -60841674 + B1_Mur4 SINE Alu 28 150 0 7 1625 676 214 57 7 chr1 136353822 136353963 -60841469 - B1_Mur1 SINE Alu -1 148 1 7 1625 829 208 75 20 chr1 136354077 136354278 -60841154 + MTC LTR MaLR 1 212 -209 7 1625 910 158 27 0 chr1 136354279 136354425 -60841007 + B1_Mur4 SINE Alu 1 150 0 7 1625 198 191 0 0 chr1 136354440 136354482 -60840950 + GA-rich Low_complexity Low_complexity 3 44 0 7 1625 571 197 104 40 chr1 136354508 136354709 -60840723 + MTC LTR MaLR 200 413 -8 7 1625 289 246 0 17 chr1 136355563 136355621 -60839811 + PB1D7 SINE Alu 46 102 -18 7 1625 1210 34 0 26 chr1 136355755 136355906 -60839526 + B1_Mus1 SINE Alu 2 148 0 7 1625 1450 54 22 5 chr1 136355922 136356107 -60839325 + B2_Mm2 SINE B2 1 188 -7 7 1625 231 237 237 0 chr1 136356210 136356303 -60839129 + PB1D10 SINE Alu 1 115 -2 7 1625 250 264 0 0 chr1 136356303 136356356 -60839076 + ID SINE ID 2 54 -170 7 1625 375 60 0 0 chr1 136356547 136356597 -60838835 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1625 727 264 0 0 chr1 136356650 136356798 -60838634 - B1_Mus1 SINE Alu 0 148 1 7 1625 386 216 92 39 chr1 136356930 136357060 -60838372 - B3A SINE B2 -11 205 69 7 1625 186 43 0 0 chr1 136357114 136357137 -60838295 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1625 840 58 190 0 chr1 136357137 136357258 -60838174 - B1_Mus1 SINE Alu -3 145 2 7 1625 351 310 50 10 chr1 136357269 136357370 -60838062 - PB1D10 SINE Alu -7 110 6 7 1625 788 168 272 12 chr1 136357441 136357610 -60837822 + B3 SINE B2 1 213 -3 7 1625 255 239 0 0 chr1 136358234 136358301 -60837131 + CT-rich Low_complexity Low_complexity 1 67 0 7 1625 736 185 74 0 chr1 136358306 136358441 -60836991 - B1_Mur4 SINE Alu -5 145 1 7 1625 330 45 0 0 chr1 136358467 136358511 -60836921 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1625 378 205 8 90 chr1 136358511 136358634 -60836798 - B1_Mm SINE Alu -12 135 23 7 1625 180 0 0 0 chr1 136358639 136358659 -60836773 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1625 1152 62 7 0 chr1 136358659 136358805 -60836627 - B1_Mus2 SINE Alu 0 147 1 7 1625 906 48 167 0 chr1 136358846 136358972 -60836460 - B1_Mm SINE Alu 0 147 1 7 1625 303 247 20 88 chr1 136359143 136359245 -60836187 - B4A SINE B4 -15 277 183 7 1625 30 27 0 0 chr1 136359890 136359927 -60835505 + AT_rich Low_complexity Low_complexity 1 37 0 7 1625 662 211 70 0 chr1 136359927 136360098 -60835334 - B3 SINE B2 -7 209 27 7 1625 795 102 16 0 chr1 136360105 136360232 -60835200 - B1_Mur4 SINE Alu -19 131 3 7 1625 276 139 0 0 chr1 136360233 136360276 -60835156 - B3 SINE B2 -173 43 1 7 1625 319 270 21 7 chr1 136360783 136360879 -60834553 + B1F SINE Alu 26 119 -1 7 1625 603 203 176 28 chr1 136360879 136361061 -60834371 + B3 SINE B2 1 209 -7 7 1625 694 258 20 35 chr1 136361299 136361500 -60833932 - B3A SINE B2 0 198 1 7 1625 1052 90 0 20 chr1 136361507 136361518 -60833914 - B1_Mus2 SINE Alu -2 145 137 7 1625 207 0 0 0 chr1 136361518 136361541 -60833891 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1625 1052 90 0 20 chr1 136361541 136361677 -60833755 - B1_Mus2 SINE Alu -11 136 1 7 1625 506 287 44 0 chr1 136361701 136361837 -60833595 - B1_Mur2 SINE Alu -7 142 1 7 1625 764 200 21 0 chr1 136361866 136362011 -60833421 + B1_Mur4 SINE Alu 3 150 0 7 1625 28 0 0 0 chr1 136362021 136362049 -60833383 + AT_rich Low_complexity Low_complexity 1 28 0 7 1625 26 30 0 0 chr1 136362080 136362113 -60833319 + AT_rich Low_complexity Low_complexity 1 33 0 7 1625 208 219 0 0 chr1 136362174 136362215 -60833217 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1625 234 267 53 0 chr1 136362265 136362286 -60833146 - PB1D10 SINE Alu -29 88 10 7 1625 239 241 19 0 chr1 136362286 136362340 -60833092 - ID_B1 SINE B4 -79 145 91 7 1625 360 228 43 21 chr1 136362409 136362503 -60832929 - PB1D10 SINE Alu -1 116 21 7 1625 747 201 14 0 chr1 136362590 136362729 -60832703 + B1_Mur1 SINE Alu 2 142 -7 7 1625 269 228 0 141 chr1 136362775 136362867 -60832565 - ID4 SINE ID -1 82 4 7 1625 332 254 119 71 chr1 136362936 136363162 -60832270 + B3A SINE B2 1 215 -1 7 1625 1172 95 0 0 chr1 136363211 136363359 -60832073 + B1_Mus1 SINE Alu 1 148 0 7 1625 4308 45 28 6 chr1 136363361 136363895 -60831537 + L1Md_F2 LINE L1 6037 6582 0 7 1625 279 0 0 0 chr1 136364812 136364843 -60830589 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1625 1115 79 0 0 chr1 136364843 136364982 -60830450 - B1_Mus2 SINE Alu -8 139 1 7 1625 231 287 148 11 chr1 136365195 136365283 -60830149 + PB1D10 SINE Alu 3 102 -15 7 1625 303 140 0 0 chr1 136365419 136365469 -60829963 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1625 31 0 0 0 chr1 136365735 136365766 -60829666 + AT_rich Low_complexity Low_complexity 1 31 0 7 1625 415 252 19 9 chr1 136365782 136365890 -60829542 - PB1D10 SINE Alu -5 112 4 7 1625 1109 83 7 0 chr1 136366135 136366279 -60829153 - B1_Mus2 SINE Alu -2 145 1 7 1625 218 149 192 82 chr1 136366407 136366480 -60828952 - MIRb SINE MIR -134 134 54 7 1625 215 283 160 10 chr1 136366485 136366585 -60828847 + PB1D10 SINE Alu 1 115 -2 7 1625 343 321 92 0 chr1 136366610 136366741 -60828691 + ID_B1 SINE B4 80 222 -2 7 1625 676 91 53 18 chr1 136366781 136366899 -60828533 - B1_Mm SINE Alu -38 109 1 7 1625 547 115 114 9 chr1 136366956 136367061 -60828371 - B1_Mur4 SINE Alu 0 150 35 7 1625 266 312 86 0 chr1 136367446 136367574 -60827858 + MER3 DNA MER1_type 1 139 -70 7 1625 390 212 237 9 chr1 136367673 136367787 -60827645 - B1F1 SINE Alu -8 141 2 7 1625 476 142 9 36 chr1 136368670 136368780 -60826652 - Lx3_Mus LINE L1 0 7009 6903 7 1625 1144 55 7 20 chr1 136369442 136369590 -60825842 + B1_Mus1 SINE Alu 3 148 0 7 1625 434 18 18 0 chr1 136369805 136369860 -60825572 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1625 1163 194 131 26 chr1 136369876 136370188 -60825244 - MTD LTR MaLR 0 419 75 7 1625 332 198 114 23 chr1 136370331 136370419 -60825013 + PB1D10 SINE Alu 21 116 -1 7 1625 1138 251 60 28 chr1 136370515 136370879 -60824553 - MTEb LTR MaLR -2 377 2 7 1625 551 112 11 0 chr1 136371220 136371309 -60824123 + (TC)n Simple_repeat Simple_repeat 1 90 0 7 1625 421 278 258 21 chr1 136371601 136371829 -60823603 - B4 SINE B4 0 292 11 7 1625 449 291 16 8 chr1 136371866 136371994 -60823438 + ID_B1 SINE B4 91 219 -5 7 1625 390 280 27 20 chr1 136372094 136372240 -60823192 - B1F SINE Alu -2 147 1 7 1625 1325 70 5 80 chr1 136372744 136372945 -60822487 - B2_Mm1a SINE B2 -6 187 2 7 1625 680 196 171 0 chr1 136372984 136373142 -60822290 + ID_B1 SINE B4 1 185 -39 7 1625 1264 109 17 0 chr1 136373142 136373317 -60822115 + B2_Mm2 SINE B2 2 179 -16 7 1625 1034 64 7 0 chr1 136373321 136373462 -60821970 + B1_Mus1 SINE Alu 7 148 0 7 1625 208 0 30 30 chr1 136373470 136373503 -60821929 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1625 196 336 100 0 chr1 136373627 136373767 -60821665 + MIR SINE MIR 88 241 -21 7 1625 756 211 7 0 chr1 136373846 136373993 -60821439 + B1_Mur2 SINE Alu 1 148 -1 7 1625 186 71 0 0 chr1 136373995 136374023 -60821409 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 7 1625 789 180 176 27 chr1 136374301 136374489 -60820943 - B3 SINE B2 0 216 1 7 1625 1189 61 0 0 chr1 136374632 136374779 -60820653 - B1_Mus2 SINE Alu 0 147 1 7 1625 571 205 82 0 chr1 136374823 136374945 -60820487 - B3A SINE B2 -66 132 1 7 1625 922 184 83 44 chr1 136374984 136375189 -60820243 - B3 SINE B2 -2 214 2 7 1625 425 224 204 11 chr1 136375325 136375501 -60819931 + B3 SINE B2 1 210 -6 7 1625 518 291 28 0 chr1 136375711 136375852 -60819580 - B1F SINE Alu 0 149 5 7 1625 344 284 10 10 chr1 136376357 136376453 -60818979 - PB1D10 SINE Alu -1 116 21 8 1625 301 267 97 19 chr1 136377386 136377489 -60817943 + PB1D10 SINE Alu 2 112 -37 8 1625 277 159 100 14 chr1 136377521 136377591 -60817841 + ID4 SINE ID 5 80 -3 8 1625 455 239 20 0 chr1 136377615 136377733 -60817699 + B1_Mur1 SINE Alu 7 131 -19 8 1625 261 0 0 0 chr1 136377736 136377765 -60817667 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1625 806 65 187 0 chr1 136377765 136377888 -60817544 - B1_Mus2 SINE Alu 0 147 2 8 1625 372 195 24 24 chr1 136378320 136378404 -60817028 + PB1D10 SINE Alu 33 116 -1 8 1625 855 35 17 0 chr1 136379206 136379321 -60816111 - B1_Mus2 SINE Alu 0 147 31 8 1625 378 279 96 0 chr1 136379382 136379486 -60815946 - RSINE1 SINE B4 -19 146 33 8 1625 412 278 99 26 chr1 136379620 136379812 -60815620 + B4A SINE B4 44 249 -43 8 1625 380 246 51 22 chr1 136380003 136380140 -60815292 + B1F SINE Alu 7 147 -2 8 1625 313 117 351 9 chr1 136380834 136380945 -60814487 - B2_Mm2 SINE B2 0 195 47 8 1625 1228 110 35 0 chr1 136380992 136381165 -60814267 - B2_Mm1t SINE B2 -14 179 1 8 1625 300 356 0 0 chr1 136381175 136381248 -60814184 - RSINE1 SINE B4 -91 74 2 8 1625 225 311 75 0 chr1 136381313 136381419 -60814013 - PB1D10 SINE Alu -3 114 1 8 1625 641 229 30 0 chr1 136381421 136381552 -60813880 - B1F1 SINE Alu -6 143 9 8 1625 1191 41 7 0 chr1 136381599 136381744 -60813688 + B1_Mm SINE Alu 2 147 0 8 1625 763 193 27 7 chr1 136382753 136382899 -60812533 - B1_Mur4 SINE Alu -1 149 1 8 1625 1204 62 0 0 chr1 136382909 136383055 -60812377 + B1_Mus2 SINE Alu 2 147 0 8 1625 207 0 0 0 chr1 136383055 136383078 -60812354 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1625 355 300 58 0 chr1 136383358 136383478 -60811954 - ID_B1 SINE B4 -1 223 97 8 1625 1245 59 0 17 chr1 136383961 136384134 -60811298 + B2_Mm2 SINE B2 2 171 -24 8 1625 883 148 0 45 chr1 136384664 136384820 -60810612 - B1_Mur3 SINE Alu 0 149 1 8 1625 295 297 0 0 chr1 136385080 136385154 -60810278 - ID4_ SINE ID 0 83 10 8 1625 222 62 0 0 chr1 136386346 136386378 -60809054 + (TATG)n Simple_repeat Simple_repeat 4 35 0 8 1625 497 249 41 119 chr1 136387577 136387796 -60807636 + B4 SINE B4 22 223 -69 8 1625 903 73 22 7 chr1 136387661 136387798 -60807634 + B1_Mur4 SINE Alu 12 150 0 8 1625 553 160 103 9 chr1 136387937 136388044 -60807388 - B1_Mur2 SINE Alu -32 117 1 8 1625 4026 143 55 14 chr1 136388456 136389106 -60806326 - RLTR17 LTR ERVK 0 692 16 8 1625 222 240 20 0 chr1 136389156 136389206 -60806226 - B2_Mm2 SINE B2 -141 54 4 8 1625 353 219 31 0 chr1 136389214 136389278 -60806154 - B4 SINE B4 -12 280 215 8 1625 245 302 69 11 chr1 136389307 136389394 -60806038 - RSINE1 SINE B4 -31 134 43 8 1625 226 313 39 68 chr1 136389384 136389487 -60805945 - B4 SINE B4 -117 175 76 8 1625 1202 48 7 7 chr1 136389951 136390099 -60805333 - B1_Mus1 SINE Alu 0 148 1 8 1625 673 239 69 26 chr1 136390184 136390373 -60805059 + B3 SINE B2 1 197 -19 8 1625 366 194 194 0 chr1 136390406 136390499 -60804933 + PB1D9 SINE Alu 9 119 -1 8 1625 270 0 0 0 chr1 136392021 136392051 -60803381 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1625 501 17 0 0 chr1 136392152 136392210 -60803222 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1625 688 147 62 8 chr1 136392218 136392348 -60803084 - B1_Mur1 SINE Alu -1 148 12 8 1625 231 294 58 71 chr1 136392219 136392373 -60803059 - B4A SINE B4 -68 224 73 8 1625 273 247 165 0 chr1 136392908 136392993 -60802439 + PB1D9 SINE Alu 9 107 -13 8 1625 694 182 41 27 chr1 136393052 136393199 -60802233 + B1_Mur3 SINE Alu 1 149 0 8 1625 468 238 261 67 chr1 136393599 136393779 -60801653 + B3 SINE B2 2 216 0 8 1625 1147 62 0 14 chr1 136393809 136393957 -60801475 + B1_Mus1 SINE Alu 2 147 -1 8 1625 22 0 0 0 chr1 136393958 136393980 -60801452 + AT_rich Low_complexity Low_complexity 1 22 0 8 1625 190 268 157 79 chr1 136394442 136394531 -60800901 + L2c LINE L2 3278 3373 -14 8 1625 512 319 133 25 chr1 136394622 136394818 -60800614 - ID_B1 SINE B4 -6 218 2 8 1625 1326 14 0 0 chr1 136394950 136395096 -60800336 - B1_Mm SINE Alu -1 146 1 8 1625 509 200 198 12 chr1 136395109 136395276 -60800156 - MTD LTR MaLR 0 419 222 8 1625 536 214 76 0 chr1 136395270 136395415 -60800017 - MTD-int LTR MaLR -1102 156 1 8 1625 1230 231 73 58 chr1 136395415 136395828 -60799604 - MTD LTR MaLR 0 419 1 8 1625 734 209 22 55 chr1 136396184 136396366 -60799066 - B3A SINE B2 -15 183 8 8 1625 216 0 0 0 chr1 136396376 136396400 -60799032 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1625 1208 54 0 0 chr1 136396400 136396547 -60798885 - B1_Mus1 SINE Alu 0 148 2 8 1625 343 244 13 13 chr1 136397035 136397114 -60798318 + B3A SINE B2 2 80 -118 8 1625 515 269 69 12 chr1 136397220 136397393 -60798039 + L1MD LINE L1 5584 5766 -593 8 1625 426 20 0 0 chr1 136397440 136397491 -60797941 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1625 1069 97 14 0 chr1 136397491 136397635 -60797797 - B1_Mus2 SINE Alu -1 146 1 8 1625 575 269 82 19 chr1 136397639 136397827 -60797605 - ID_B1 SINE B4 -2 222 38 8 1625 594 0 0 0 chr1 136398011 136398077 -60797355 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1625 580 273 64 103 chr1 136398083 136398287 -60797145 - ID_B1 SINE B4 -11 213 18 8 1625 278 171 325 12 chr1 136398332 136398415 -60797017 - B1_Mur1 SINE Alu -29 120 12 8 1625 1074 60 15 0 chr1 136398432 136398565 -60796867 + B1_Mus2 SINE Alu 1 135 -12 8 1625 180 77 0 0 chr1 136398565 136398591 -60796841 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 8 1625 465 50 0 0 chr1 136398611 136398671 -60796761 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1625 556 299 25 19 chr1 136398673 136398833 -60796599 - B3A SINE B2 -33 165 5 8 1625 380 208 159 56 chr1 136398839 136398946 -60796486 - PB1D9 SINE Alu -2 118 1 8 1625 275 307 19 24 chr1 136399063 136399203 -60796229 + L1MB3 LINE L1 5993 6135 -48 8 1625 478 217 200 28 chr1 136399205 136399385 -60796047 + B3 SINE B2 2 212 -4 8 1625 479 45 45 0 chr1 136399398 136399465 -60795967 + L1_Mus2 LINE L1 6497 6566 0 8 1625 672 186 54 0 chr1 136399644 136399773 -60795659 - B1_Mur2 SINE Alu -13 136 1 8 1625 1039 188 11 0 chr1 136400065 136400241 -60795191 + B3 SINE B2 39 216 0 8 1625 559 237 72 0 chr1 136400258 136400397 -60795035 + B1_Mur1 SINE Alu 1 149 0 8 1625 261 260 76 25 chr1 136400426 136400505 -60794927 + PB1D10 SINE Alu 22 104 -13 8 1625 386 258 0 124 chr1 136400709 136400734 -60794698 + MT2B LTR ERVL 128 152 -449 8 1625 565 266 35 60 chr1 136400734 136400934 -60794498 + B3A SINE B2 1 195 -3 8 1625 386 265 1 119 chr1 136400934 136400950 -60794482 + MT2B LTR ERVL 153 200 -384 8 1625 670 104 0 0 chr1 136400950 136401046 -60794386 + B1_Mus1 SINE Alu 1 96 -52 8 1625 386 265 1 119 chr1 136401046 136401067 -60794365 + MT2B LTR ERVL 201 272 -312 8 1625 654 13 0 0 chr1 136401083 136401158 -60794274 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1625 507 231 219 51 chr1 136401274 136401452 -60793980 + B3 SINE B2 1 208 -8 8 1625 477 34 0 0 chr1 136401573 136401632 -60793800 + (CATA)n Simple_repeat Simple_repeat 1 59 0 8 1625 182 268 54 40 chr1 136401743 136401817 -60793615 - L2 LINE L2 -385 3034 2960 8 1625 371 220 79 10 chr1 136402337 136402438 -60792994 + PB1D9 SINE Alu 1 108 -12 8 1625 216 97 0 0 chr1 136402439 136402470 -60792962 + (TAA)n Simple_repeat Simple_repeat 1 31 0 8 1625 616 215 116 22 chr1 136403317 136403467 -60791965 + ID_B1 SINE B4 81 241 -51 8 1625 547 257 35 0 chr1 136404118 136404231 -60791201 + ID_B1 SINE B4 107 223 -1 8 1625 625 228 101 30 chr1 136404250 136404449 -60790983 + B3 SINE B2 1 213 -3 8 1625 1379 43 37 32 chr1 136405351 136405541 -60789891 + B2_Mm2 SINE B2 1 191 -4 8 1625 455 205 0 0 chr1 136405652 136405730 -60789702 - B1_Mur1 SINE Alu -6 143 66 8 1625 830 221 43 33 chr1 136406268 136406479 -60788953 + B3 SINE B2 4 216 0 8 1625 480 210 195 31 chr1 136406523 136406651 -60788781 + B1_Mur1 SINE Alu 1 149 0 8 1625 321 275 62 0 chr1 136406920 136407000 -60788432 - RSINE1 SINE B4 -45 120 36 8 1625 211 242 91 0 chr1 136407026 136407092 -60788340 + RSINE1 SINE B4 90 161 -4 8 1625 512 284 22 0 chr1 136407135 136407269 -60788163 + B1_Mur1 SINE Alu 3 139 -10 8 1625 210 71 0 0 chr1 136407273 136407301 -60788131 + (TAG)n Simple_repeat Simple_repeat 3 30 0 8 1625 2183 163 31 136 chr1 136407342 136407672 -60787760 + RLTR11A2 LTR ERVK 1 274 -253 8 1625 1226 35 0 0 chr1 136407672 136407814 -60787618 + B1_Mus1 SINE Alu 1 142 -6 8 1625 216 0 0 0 chr1 136407816 136407840 -60787592 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1625 2183 163 31 136 chr1 136407840 136408095 -60787337 + RLTR11A2 LTR ERVK 275 527 0 8 1625 385 274 98 0 chr1 136408365 136408467 -60786965 - ID_B1 SINE B4 -1 223 112 8 1625 403 245 26 35 chr1 136408503 136408617 -60786815 - PB1D10 SINE Alu -2 115 3 8 1625 365 37 37 0 chr1 136409498 136409552 -60785880 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 8 1625 187 54 0 51 chr1 136409558 136409597 -60785835 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 8 1625 734 175 0 8 chr1 136409602 136409723 -60785709 - PB1D9 SINE Alu 0 120 1 8 1625 1238 61 43 0 chr1 136411210 136411373 -60784059 + B2_Mm2 SINE B2 2 171 -24 9 1625 473 273 27 0 chr1 136411378 136411488 -60783944 + PB1D9 SINE Alu 7 119 -1 9 1625 298 221 24 72 chr1 136411535 136411618 -60783814 + B4A SINE B4 2 80 -212 9 1625 1732 106 52 55 chr1 136411641 136411931 -60783501 + MTC LTR MaLR 1 289 -132 9 1625 315 0 0 0 chr1 136412005 136412040 -60783392 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1625 270 0 0 0 chr1 136412040 136412069 -60783363 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1625 1103 67 0 0 chr1 136412093 136412228 -60783204 + B1_Mus1 SINE Alu 2 136 -12 9 1625 717 73 0 0 chr1 136412228 136412324 -60783108 + (GA)n Simple_repeat Simple_repeat 1 96 0 9 1625 647 259 7 36 chr1 136413864 136414004 -60781428 - ID_B1 SINE B4 -7 217 82 9 1625 1190 50 0 0 chr1 136414078 136414217 -60781215 + B1_Mus1 SINE Alu 2 140 -8 9 1625 211 0 88 0 chr1 136414217 136414251 -60781181 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 9 1625 198 0 0 0 chr1 136415775 136415797 -60779635 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1625 1142 82 0 0 chr1 136415797 136415935 -60779497 - B1_Mus1 SINE Alu -8 140 3 9 1625 934 239 75 158 chr1 136416903 136417384 -60778048 - RMER4A LTR ERVK -9 457 17 9 1625 301 327 10 0 chr1 136417867 136417968 -60777464 - PB1D10 SINE Alu -15 102 1 9 1625 1133 143 115 29 chr1 136418153 136418361 -60777071 - URR1A DNA MER1_type 0 226 1 9 1625 898 137 99 33 chr1 136418423 136418604 -60776828 + B2_Mm2 SINE B2 1 193 -2 9 1625 533 232 53 95 chr1 136418982 136419172 -60776260 - B3A SINE B2 -16 182 1 9 1625 926 160 0 7 chr1 136419180 136419331 -60776101 - B1_Mur4 SINE Alu 0 150 1 9 1625 538 260 58 13 chr1 136419408 136419564 -60775868 + RSINE1 SINE B4 3 165 0 9 1625 243 280 0 0 chr1 136419564 136419657 -60775775 + (CA)n Simple_repeat Simple_repeat 1 93 0 9 1625 759 68 246 0 chr1 136419689 136419807 -60775625 + B1_Mus1 SINE Alu 2 148 0 9 1625 233 241 17 0 chr1 136419873 136419931 -60775501 - PB1D10 SINE Alu -37 80 22 9 1625 497 250 19 86 chr1 136420248 136420276 -60775156 - ID_B1 SINE B4 -1 223 124 9 1625 869 139 0 0 chr1 136420276 136420398 -60775034 - B1_Mur4 SINE Alu -27 123 2 9 1625 497 250 19 86 chr1 136420398 136420410 -60775022 - ID_B1 SINE B4 -1 123 73 9 1625 1680 32 0 0 chr1 136421357 136421546 -60773886 - B2_Mm1t SINE B2 -3 190 2 9 1625 302 248 53 42 chr1 136421962 136422078 -60773354 - PB1D7 SINE Alu 0 120 1 9 1625 1653 90 18 18 chr1 136422769 136422995 -60772437 - ORR1A2 LTR MaLR -8 319 94 9 1625 315 71 0 0 chr1 136422996 136423038 -60772394 + (T)n Simple_repeat Simple_repeat 1 42 0 9 1625 796 50 0 0 chr1 136423038 136423137 -60772295 - B1_Mm SINE Alu 0 147 49 9 1625 644 90 50 10 chr1 136423137 136423238 -60772194 - ORR1A2 LTR MaLR -221 105 1 9 1625 453 200 10 31 chr1 136423941 136424039 -60771393 - ID_B1 SINE B4 -6 218 123 9 1625 261 230 165 44 chr1 136424083 136424174 -60771258 + PB1D9 SINE Alu 1 102 -47 9 1625 477 0 0 0 chr1 136424174 136424227 -60771205 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 9 1625 2117 133 72 26 chr1 136424312 136424689 -60770743 + ORR1B1 LTR MaLR 1 394 0 9 1625 492 181 102 28 chr1 136424747 136424855 -60770577 + PB1D9 SINE Alu 1 116 -4 9 1625 542 63 13 0 chr1 136424860 136424939 -60770493 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 9 1625 597 163 289 40 chr1 136424949 136425122 -60770310 + B3 SINE B2 1 216 0 9 1625 1172 44 0 0 chr1 136425139 136425274 -60770158 + B1_Mus2 SINE Alu 1 135 -12 9 1625 180 0 0 0 chr1 136425274 136425294 -60770138 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 9 1625 248 310 0 14 chr1 136425650 136425722 -60769710 + GA-rich Low_complexity Low_complexity 3 73 0 9 1625 367 206 27 1 chr1 136425738 136425822 -60769610 + B1F SINE Alu 56 140 -9 9 1625 296 282 0 14 chr1 136425867 136425939 -60769493 + PB1D10 SINE Alu 40 110 -7 9 1625 693 0 0 0 chr1 136426039 136426116 -60769316 + (TC)n Simple_repeat Simple_repeat 2 78 0 9 1625 709 258 32 19 chr1 136426623 136426781 -60768651 - RSINE1 SINE B4 -4 161 2 9 1625 581 239 77 26 chr1 136426850 136427005 -60768427 + MIR SINE MIR 12 174 -88 9 1625 259 309 25 128 chr1 136427625 136427661 -60767771 - MLT1H2 LTR MaLR -2 487 462 9 1625 927 164 0 0 chr1 136427661 136427807 -60767625 + B1_Mus1 SINE Alu 1 146 -2 9 1625 198 103 0 0 chr1 136427807 136427836 -60767596 + (CCA)n Simple_repeat Simple_repeat 3 31 0 9 1625 259 309 25 128 chr1 136427836 136428002 -60767430 - MLT1H2 LTR MaLR -28 461 306 9 1625 395 124 0 22 chr1 136428080 136428171 -60767261 + (CAAAAA)n Simple_repeat Simple_repeat 1 89 0 9 1625 1388 59 10 46 chr1 136428197 136428392 -60767040 - B2_Mm2 SINE B2 -4 191 4 9 1625 699 12 0 0 chr1 136428418 136428498 -60766934 + (TC)n Simple_repeat Simple_repeat 1 80 0 9 1625 270 0 0 0 chr1 136428498 136428527 -60766905 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1625 612 77 0 0 chr1 136428539 136428617 -60766815 + B2_Mm2 SINE B2 2 79 -116 9 1625 899 176 198 6 chr1 136428673 136428850 -60766582 + B3 SINE B2 3 213 -3 9 1625 343 270 60 0 chr1 136428859 136428959 -60766473 + MLT1C LTR MaLR 13 118 -349 9 1625 634 230 121 32 chr1 136428970 136429127 -60766305 + B3A SINE B2 27 197 -1 9 1625 1229 55 0 0 chr1 136429164 136429310 -60766122 + B1_Mus2 SINE Alu 2 147 0 9 1625 207 0 0 0 chr1 136429310 136429333 -60766099 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1625 720 161 8 39 chr1 136429417 136429546 -60765886 + ID_B1 SINE B4 93 217 -7 9 1625 658 204 28 28 chr1 136429676 136429817 -60765615 + B1_Mur2 SINE Alu 1 141 -8 9 1625 596 237 79 7 chr1 136429837 136429977 -60765455 + RSINE1 SINE B4 3 152 -13 9 1625 1309 86 40 0 chr1 136430027 136430201 -60765231 + B2_Mm2 SINE B2 1 181 -14 9 1625 2668 69 151 147 chr1 136430285 136430795 -60764637 + RLTR1B LTR ERV1 1 512 0 9 1625 316 179 246 82 chr1 136430818 136430940 -60764492 + MLT1C LTR MaLR 242 383 -7 9 1625 491 202 11 0 chr1 136430956 136431045 -60764387 - PB1D9 SINE Alu -9 111 22 9 1625 555 16 0 0 chr1 136431045 136431109 -60764323 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 9 1625 1560 232 51 16 chr1 136431118 136431491 -60763941 - MTD LTR MaLR 0 419 34 9 1625 1135 122 6 0 chr1 136431492 136431664 -60763768 - URR1A DNA MER1_type 0 226 54 9 1625 1973 114 14 74 chr1 136432016 136432366 -60763066 - ORR1A4 LTR MaLR 0 329 1 9 1625 283 149 0 60 chr1 136432991 136433041 -60762391 - ID_B1 SINE B4 -1 223 177 9 1625 255 246 48 32 chr1 136432993 136433056 -60762376 - PB1 SINE Alu -2 125 62 9 1625 334 264 0 57 chr1 136433342 136433466 -60761966 - B3A SINE B2 -40 176 1 9 1625 203 339 110 24 chr1 136433471 136433598 -60761834 - MER5B DNA MER1_type -38 140 3 9 1625 243 324 0 90 chr1 136433822 136433900 -60761532 - ID4 SINE ID -11 72 2 9 1625 229 321 137 44 chr1 136434112 136434317 -60761115 + MIRb SINE MIR 10 233 -35 9 1625 2588 153 76 72 chr1 136434586 136435068 -60760364 - RLTR24 LTR ERV1 0 529 46 9 1625 4726 51 2 0 chr1 136435068 136435632 -60759800 + L1Md_F2 LINE L1 6006 6570 -12 9 1625 2588 153 76 72 chr1 136435632 136435676 -60759756 - RLTR24 LTR ERV1 -484 45 2 9 1625 201 39 0 0 chr1 136435847 136435873 -60759559 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1625 223 383 0 24 chr1 136435889 136435972 -60759460 - L2b LINE L2 -31 3344 3264 9 1625 1706 26 0 0 chr1 136436277 136436469 -60758963 + B2_Mm1a SINE B2 2 193 0 9 1625 895 265 11 5 chr1 136436578 136436764 -60758668 - B3 SINE B2 0 216 30 9 1625 1299 80 11 6 chr1 136436770 136436946 -60758486 - B2_Mm2 SINE B2 -18 177 1 9 1625 252 122 0 0 chr1 136437568 136437609 -60757823 + (TCG)n Simple_repeat Simple_repeat 2 42 0 9 1625 239 259 92 74 chr1 136438828 136438939 -60756493 + PB1D7 SINE Alu 11 119 -1 9 1625 666 238 92 6 chr1 136438959 136439132 -60756300 + B3A SINE B2 2 189 -9 9 1625 673 263 5 39 chr1 136439259 136439469 -60755963 - B3 SINE B2 -1 194 1 9 1625 266 277 186 21 chr1 136439473 136439613 -60755819 + MER5A1 DNA MER1_type 2 164 -2 9 1625 866 161 28 7 chr1 136439668 136439812 -60755620 + B1_Mur3 SINE Alu 2 148 -1 9 1625 1352 84 17 0 chr1 136439814 136439993 -60755439 + B2_Mm2 SINE B2 2 183 -12 9 1625 223 28 56 0 chr1 136439993 136440029 -60755403 + (CAA)n Simple_repeat Simple_repeat 2 39 0 9 1625 492 18 0 0 chr1 136440030 136440087 -60755345 + (CCAA)n Simple_repeat Simple_repeat 2 58 0 9 1625 619 250 0 0 chr1 136440099 136440231 -60755201 - B1F1 SINE Alu -13 136 5 9 1625 653 130 17 0 chr1 136440383 136440498 -60754934 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 9 1625 1363 221 69 31 chr1 136440543 136440893 -60754539 + MTD LTR MaLR 1 363 -56 9 1625 266 317 80 33 chr1 136440963 136441113 -60754319 + MIR3 SINE MIR 51 207 -1 9 1625 486 265 37 0 chr1 136441297 136441433 -60753999 + B1F SINE Alu 1 141 -8 9 1625 418 226 67 129 chr1 136441434 136441584 -60753848 + MT2B LTR ERVL 121 259 -342 9 1625 430 246 41 25 chr1 136441584 136441705 -60753727 + B1_Mm SINE Alu 3 125 -22 9 1625 1718 187 58 16 chr1 136441679 136442044 -60753388 + RMER6C LTR ERVK 311 690 0 9 1625 672 256 121 6 chr1 136442190 136442347 -60753085 + B3A SINE B2 2 176 -22 9 1625 22 0 0 0 chr1 136442368 136442390 -60753042 + AT_rich Low_complexity Low_complexity 1 22 0 9 1625 581 150 62 45 chr1 136442395 136442507 -60752925 + PB1D9 SINE Alu 7 120 0 1 1625 612 99 27 0 chr1 136442752 136442863 -60752569 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1625 486 0 0 0 chr1 136442863 136442916 -60752516 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1625 335 236 14 14 chr1 136442916 136442989 -60752443 - B3A SINE B2 -125 73 1 1 1625 222 37 0 0 chr1 136444155 136444182 -60751250 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1625 540 125 308 0 chr1 136444185 136444289 -60751143 - B1_Mur4 SINE Alu -14 136 1 1 1625 262 148 33 0 chr1 136444298 136444335 -60751097 + polypyrimidine Low_complexity Low_complexity 28 65 0 1 1625 1431 11 6 11 chr1 136444335 136444514 -60750918 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1625 262 148 33 0 chr1 136444514 136444537 -60750895 + polypyrimidine Low_complexity Low_complexity 4 27 0 1 1625 1162 124 43 11 chr1 136444540 136444556 -60750876 - B2_Mm2 SINE B2 -1 194 175 1 1625 1134 91 0 0 chr1 136444556 136444699 -60750733 - B1_Mus1 SINE Alu -5 143 1 1 1625 1162 124 43 11 chr1 136444699 136444870 -60750562 - B2_Mm2 SINE B2 -21 174 1 1 1625 29 47 0 0 chr1 136445211 136445254 -60750178 + AT_rich Low_complexity Low_complexity 1 43 0 1 1625 420 196 98 45 chr1 136445257 136445369 -60750063 - PB1D9 SINE Alu -1 119 2 1 1625 232 186 0 23 chr1 136445374 136445418 -60750014 + CT-rich Low_complexity Low_complexity 2 44 0 1 1625 581 50 25 0 chr1 136445463 136445543 -60749889 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1625 504 254 93 7 chr1 136445546 136445685 -60749747 - B3A SINE B2 0 198 48 1 1625 987 46 122 0 chr1 136445688 136445819 -60749613 - B1_Mus2 SINE Alu 0 147 1 1 1626 324 0 0 0 chr1 136446944 136446980 -60748452 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1626 748 263 45 15 chr1 136447113 136447271 -60748161 + B3 SINE B2 7 164 -52 1 1626 227 54 0 26 chr1 136447271 136447309 -60748123 + (CATA)n Simple_repeat Simple_repeat 3 39 0 1 1626 748 263 45 15 chr1 136447309 136447351 -60748081 + B3 SINE B2 165 212 -4 1 1626 321 261 0 0 chr1 136447356 136447421 -60748011 + ID_B1 SINE B4 78 142 -82 1 1626 425 233 48 10 chr1 136447366 136447470 -60747962 + PB1D10 SINE Alu 7 114 -3 1 1626 561 126 76 19 chr1 136447479 136447584 -60747848 + B1_Mus2 SINE Alu 17 127 -20 1 1626 278 106 21 0 chr1 136447590 136447637 -60747795 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1 1626 1233 48 0 0 chr1 136447722 136447868 -60747564 + B1_Mus2 SINE Alu 2 147 0 1 1626 187 218 0 98 chr1 136448171 136448232 -60747200 + L2a LINE L2 3280 3334 -92 1 1626 269 151 19 19 chr1 136448423 136448477 -60746955 + B1_Mm SINE Alu 94 147 0 1 1626 30 27 0 0 chr1 136448477 136448514 -60746918 + AT_rich Low_complexity Low_complexity 1 37 0 1 1626 263 326 58 22 chr1 136448520 136448658 -60746774 + MIRb SINE MIR 25 167 -101 1 1626 248 279 51 0 chr1 136448677 136448756 -60746676 - B1F SINE Alu 0 149 67 1 1626 279 226 265 0 chr1 136448767 136448869 -60746563 + B3 SINE B2 80 208 -8 1 1626 367 217 12 0 chr1 136448867 136448950 -60746482 + B1_Mur2 SINE Alu 10 93 -56 1 1626 402 215 9 53 chr1 136449128 136449241 -60746191 - B1F SINE Alu -40 109 2 1 1626 288 0 0 0 chr1 136449351 136449383 -60746049 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 1626 377 185 64 21 chr1 136449847 136449941 -60745491 + B1_Mur1 SINE Alu 43 140 -9 1 1626 604 228 36 7 chr1 136449963 136450100 -60745332 + ID_B1 SINE B4 77 217 -7 1 1626 390 231 62 69 chr1 136449973 136450117 -60745315 + B1_Mur3 SINE Alu 7 149 0 1 1626 191 32 65 0 chr1 136450297 136450328 -60745104 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1626 315 264 67 67 chr1 136450692 136450842 -60744590 - MLT1B LTR MaLR -48 342 193 1 1626 333 0 0 0 chr1 136451353 136451390 -60744042 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1626 436 224 111 9 chr1 136451662 136451770 -60743662 + B1F SINE Alu 30 148 -1 1 1626 185 233 0 0 chr1 136452497 136452540 -60742892 - L2a LINE L2 -9 3417 3375 1 1626 22 0 0 0 chr1 136453605 136453627 -60741805 + GC_rich Low_complexity Low_complexity 1 22 0 1 1626 330 186 20 30 chr1 136454236 136454330 -60741102 + B1F SINE Alu 20 139 -10 1 1626 467 248 37 0 chr1 136454390 136454499 -60740933 + PB1D9 SINE Alu 1 113 -7 1 1626 313 358 45 40 chr1 136454795 136454829 -60740603 - B3 SINE B2 -10 206 171 1 1626 2227 40 29 0 chr1 136454829 136455103 -60740329 + L1_Mus1 LINE L1 6286 6567 0 1 1626 370 314 46 33 chr1 136455103 136455266 -60740166 - B3A SINE B2 -46 170 8 1 1626 215 241 37 0 chr1 136455270 136455324 -60740108 - B1_Mur1 SINE Alu -7 142 87 1 1626 549 254 0 25 chr1 136455395 136455516 -60739916 + ID_B1 SINE B4 88 205 -19 1 1626 1233 54 0 0 chr1 136455647 136455794 -60739638 + B1_Mus1 SINE Alu 2 148 0 1 1626 198 310 0 0 chr1 136456528 136456588 -60738844 + L2c LINE L2 3222 3309 -78 1 1626 26 50 0 0 chr1 136456942 136456982 -60738450 + GC_rich Low_complexity Low_complexity 1 40 0 1 1626 23 86 0 0 chr1 136457172 136457230 -60738202 + GC_rich Low_complexity Low_complexity 1 58 0 1 1626 21 0 0 0 chr1 136457950 136457971 -60737461 + GC_rich Low_complexity Low_complexity 1 21 0 1 1626 191 103 0 25 chr1 136458177 136458217 -60737215 + (CCCCCT)n Simple_repeat Simple_repeat 2 40 0 1 1626 215 125 0 0 chr1 136460444 136460476 -60734956 - B1_Mus2 SINE Alu -110 37 6 1 1626 707 155 2 3 chr1 136460482 136460626 -60734806 - B1_Mus1 SINE Alu -5 144 2 1 1626 211 385 29 9 chr1 136460662 136460767 -60734665 - RSINE1 SINE B4 -2 163 57 1 1626 581 229 57 66 chr1 136460967 136461178 -60734254 - B3 SINE B2 -5 211 3 1 1626 843 230 32 11 chr1 136461314 136461503 -60733929 + B3 SINE B2 3 195 -21 1 1626 979 40 95 0 chr1 136461568 136461694 -60733738 + B1_Mus2 SINE Alu 2 139 -8 1 1626 368 303 7 70 chr1 136461728 136461870 -60733562 + B4A SINE B4 39 171 -121 1 1626 264 260 27 0 chr1 136462122 136462195 -60733237 - RSINE1 SINE B4 -13 152 78 1 1626 336 238 7 116 chr1 136462256 136462390 -60733042 - RSINE1 SINE B4 -169 123 1 1 1626 201 143 0 45 chr1 136462395 136462406 -60733026 + T-rich Low_complexity Low_complexity 33 42 0 1 1626 787 128 34 41 chr1 136462406 136462553 -60732879 - B1_Mm SINE Alu -1 146 1 1 1626 201 143 0 45 chr1 136462553 136462585 -60732847 + T-rich Low_complexity Low_complexity 1 32 0 1 1626 305 269 118 17 chr1 136463284 136463420 -60732012 - B1F SINE Alu 0 149 2 1 1626 254 229 96 41 chr1 136463470 136463543 -60731889 + PB1D10 SINE Alu 2 78 -39 1 1626 1354 71 21 21 chr1 136463801 136463987 -60731445 - B2_Mm1a SINE B2 -7 186 1 1 1626 315 151 0 19 chr1 136464120 136464174 -60731258 - B4A SINE B4 -237 55 3 1 1626 307 263 80 9 chr1 136464654 136464759 -60730673 + PB1D9 SINE Alu 3 120 0 1 1626 699 127 14 50 chr1 136464769 136464910 -60730522 + B1_Mus1 SINE Alu 10 145 -3 1 1626 868 219 66 10 chr1 136465251 136465286 -60730146 - B3 SINE B2 0 216 183 1 1626 351 0 0 0 chr1 136465286 136465325 -60730107 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1626 868 219 66 10 chr1 136465325 136465487 -60729945 - B3 SINE B2 -34 182 9 1 1626 402 267 51 69 chr1 136465521 136465738 -60729694 - B3 SINE B2 0 216 4 1 1626 221 191 0 45 chr1 136465750 136465794 -60729638 - PB1D10 SINE Alu -7 110 69 1 1626 338 167 17 0 chr1 136465924 136465984 -60729448 - ID2 SINE ID -19 64 4 1 1626 413 324 65 0 chr1 136466090 136466229 -60729203 + B3A SINE B2 33 180 -18 1 1626 518 274 21 93 chr1 136466422 136466615 -60728817 + B4 SINE B4 4 182 -110 1 1626 1059 43 63 35 chr1 136466653 136466796 -60728636 - B1_Mm SINE Alu 0 147 1 1 1626 299 312 10 30 chr1 136466967 136467066 -60728366 - RSINE1 SINE B4 -6 159 63 1 1626 853 216 147 29 chr1 136467256 136467528 -60727904 - Lx9 LINE L1 -383 7261 6958 1 1626 249 33 0 0 chr1 136467807 136467837 -60727595 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1626 238 239 0 141 chr1 136468532 136468610 -60726822 - PB1D9 SINE Alu -12 108 42 1 1626 652 172 54 8 chr1 136468671 136468800 -60726632 - B1_Mm SINE Alu 0 147 13 1 1626 251 291 115 32 chr1 136468702 136468858 -60726574 - B4A SINE B4 -87 205 37 1 1626 1162 64 0 0 chr1 136468903 136469044 -60726388 - B1_Mus2 SINE Alu -5 142 2 1 1626 1011 83 107 13 chr1 136469045 136469204 -60726228 - B2_Mm1t SINE B2 -18 175 2 1 1626 213 39 0 0 chr1 136469444 136469470 -60725962 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1626 281 212 111 56 chr1 136469814 136469904 -60725528 + PB1D10 SINE Alu 23 117 0 1 1626 272 305 37 79 chr1 136469934 136470098 -60725334 - MLT1A1 LTR MaLR 0 408 252 1 1626 815 192 62 31 chr1 136470163 136470421 -60725011 - RMER10B LTR ERVL -132 266 1 1 1626 449 168 431 26 chr1 136470577 136470730 -60724702 - B3 SINE B2 0 216 2 1 1626 24 0 0 0 chr1 136470737 136470761 -60724671 + AT_rich Low_complexity Low_complexity 1 24 0 1 1626 464 186 19 19 chr1 136470762 136470866 -60724566 - B1_Mm SINE Alu 0 147 44 1 1626 378 176 105 42 chr1 136470874 136470901 -60724531 - PB1D9 SINE Alu -1 119 88 1 1626 186 43 0 0 chr1 136470901 136470924 -60724508 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1626 378 176 105 42 chr1 136470924 136470991 -60724441 - PB1D9 SINE Alu -33 87 19 1 1626 334 248 113 57 chr1 136471036 136471160 -60724272 - B1F SINE Alu 0 149 19 1 1626 324 0 0 0 chr1 136471198 136471234 -60724198 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1626 420 154 246 0 chr1 136471302 136471412 -60724020 - B1_Mus1 SINE Alu 0 148 12 1 1626 1761 146 11 141 chr1 136471416 136471878 -60723554 - RLTR24 LTR ERV1 -79 450 49 1 1626 252 0 0 0 chr1 136471894 136471922 -60723510 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1626 753 92 233 0 chr1 136471924 136472044 -60723388 - B1_Mus1 SINE Alu 0 148 1 1 1626 246 132 113 0 chr1 136472044 136472097 -60723335 - RLTR24 LTR ERV1 -470 59 1 1 1626 394 299 0 0 chr1 136472373 136472460 -60722972 + RSINE1 SINE B4 18 104 -61 1 1626 296 276 55 37 chr1 136472504 136472613 -60722819 + B1F SINE Alu 6 116 -1 1 1626 614 79 0 11 chr1 136472748 136472838 -60722594 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 1 1626 1190 62 0 0 chr1 136472840 136472986 -60722446 - B1_Mus2 SINE Alu -1 146 1 1 1626 261 288 12 36 chr1 136473002 136473085 -60722347 - PB1D10 SINE Alu -7 110 30 1 1626 333 224 223 45 chr1 136473122 136473234 -60722198 - ID_B1 SINE B4 -14 210 79 1 1626 21 0 0 0 chr1 136473248 136473269 -60722163 + AT_rich Low_complexity Low_complexity 1 21 0 1 1626 599 165 164 8 chr1 136473719 136473841 -60721591 - B1_Mur4 SINE Alu -7 143 3 1 1626 271 260 31 74 chr1 136473843 136474005 -60721427 - Lx7 LINE L1 -13 7683 7529 1 1626 216 0 0 0 chr1 136474153 136474177 -60721255 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1626 502 251 109 49 chr1 136474227 136474474 -60720958 - Lx7 LINE L1 -618 7078 6817 1 1626 801 111 29 36 chr1 136475062 136475202 -60720230 + B1_Mur4 SINE Alu 4 142 -8 1 1626 363 44 0 0 chr1 136475202 136475247 -60720185 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 1 1626 1002 137 18 124 chr1 136475330 136475547 -60719885 - B2_Mm2 SINE B2 0 195 2 1 1626 447 250 27 48 chr1 136475556 136475703 -60719729 - B1F SINE Alu -5 144 1 1 1626 427 233 175 0 chr1 136475898 136476018 -60719414 + B1_Mur1 SINE Alu 2 142 -7 1 1626 783 244 6 0 chr1 136476193 136476353 -60719079 - B3 SINE B2 -54 162 2 1 1626 304 322 33 0 chr1 136476357 136476447 -60718985 - RSINE1 SINE B4 -69 96 4 1 1626 405 0 0 0 chr1 136476546 136476591 -60718841 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1626 612 197 31 23 chr1 136476591 136476721 -60718711 - B1_Mur2 SINE Alu -12 137 7 1 1626 366 23 0 0 chr1 136476774 136476817 -60718615 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 1626 1543 58 5 0 chr1 136476894 136477085 -60718347 - B2_Mm1a SINE B2 -1 192 1 1 1626 378 0 0 0 chr1 136477218 136477260 -60718172 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1626 479 299 34 20 chr1 136477263 136477410 -60718022 - RSINE1 SINE B4 -6 159 11 1 1626 393 256 0 0 chr1 136477694 136477772 -60717660 + RSINE1 SINE B4 5 82 -83 1 1626 383 125 14 0 chr1 136477834 136477906 -60717526 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 1 1626 445 186 171 41 chr1 136478334 136478457 -60716975 - ID_B1 SINE B4 -14 210 72 1 1626 4906 149 120 60 chr1 136478608 136479746 -60715686 - Lx4B LINE L1 0 7058 5852 1 1626 286 228 37 37 chr1 136479753 136479835 -60715597 - B4A SINE B4 -207 85 4 1 1626 218 184 23 136 chr1 136479757 136479845 -60715587 - B3A SINE B2 -118 80 3 1 1626 372 43 0 0 chr1 136479893 136479939 -60715493 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1626 270 0 0 0 chr1 136479939 136479968 -60715464 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1626 810 226 112 21 chr1 136479972 136480212 -60715220 + MTE2a LTR MaLR 6 267 -112 1 1626 250 270 66 113 chr1 136480268 136480438 -60714994 - B3A SINE B2 -57 159 2 1 1626 206 0 69 0 chr1 136480999 136481028 -60714404 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1626 947 70 54 0 chr1 136481033 136481162 -60714270 - B1_Mm SINE Alu -7 140 5 1 1626 494 266 141 40 chr1 136481215 136481364 -60714068 - RSINE1 SINE B4 0 165 2 1 1626 516 200 92 0 chr1 136482139 136482259 -60713173 - B3 SINE B2 -5 211 81 1 1626 587 195 19 41 chr1 136482355 136482548 -60712884 - B3 SINE B2 -7 188 3 1 1626 542 296 50 15 chr1 136482568 136482627 -60712805 + B3 SINE B2 11 76 -140 1 1626 1460 82 0 15 chr1 136482627 136482825 -60712607 - B2_Mm2 SINE B2 0 195 1 1 1626 542 296 50 15 chr1 136482825 136482964 -60712468 + B3 SINE B2 77 215 -1 1 1626 375 252 114 65 chr1 136483049 136483172 -60712260 - B1F SINE Alu -7 142 14 1 1626 268 309 74 81 chr1 136483172 136483190 -60712242 - ID_B1 SINE B4 0 190 78 1 1626 232 247 11 56 chr1 136483183 136483207 -60712225 - BC1_Mm scRNA scRNA -52 100 78 1 1626 1223 41 14 0 chr1 136483207 136483353 -60712079 - B1_Mur4 SINE Alu 0 150 3 1 1626 232 247 11 56 chr1 136483353 136483418 -60712014 - BC1_Mm scRNA scRNA -75 77 15 1 1626 189 0 0 0 chr1 136483421 136483442 -60711990 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1626 1040 141 59 16 chr1 136483469 136483656 -60711776 - B2_Mm2 SINE B2 0 195 1 1 1626 504 196 11 21 chr1 136483892 136483986 -60711446 + B1_Mur4 SINE Alu 1 93 -57 1 1626 326 290 50 10 chr1 136486297 136486398 -60709034 - B1_Mur2 SINE Alu -27 122 18 1 1626 623 257 78 19 chr1 136486400 136486606 -60708826 - ID_B1 SINE B4 -5 219 2 1 1626 847 272 81 29 chr1 136486702 136486975 -60708457 - MTE2b LTR MaLR -92 287 1 1 1626 305 256 13 0 chr1 136486976 136487054 -60708378 - PB1D10 SINE Alu -27 90 12 1 1626 267 289 22 0 chr1 136487054 136487066 -60708366 - ID_B1 SINE B4 -53 171 80 1 1626 603 251 169 5 chr1 136487413 136487597 -60707835 + ID_B1 SINE B4 1 214 -10 1 1626 745 274 13 31 chr1 136488040 136488266 -60707166 - ID_B1 SINE B4 -2 222 1 1 1626 833 273 5 0 chr1 136488429 136488627 -60706805 + B3 SINE B2 1 199 -17 1 1626 442 202 53 35 chr1 136488838 136488951 -60706481 - MTEa LTR MaLR -8 371 257 1 1626 293 260 138 0 chr1 136489082 136489205 -60706227 - B1_Mur3 SINE Alu -8 141 2 1 1626 1202 134 37 5 chr1 136489627 136489814 -60705618 - B2_Mm2 SINE B2 -2 193 1 1 1626 32 43 0 0 chr1 136490223 136490269 -60705163 + AT_rich Low_complexity Low_complexity 1 46 0 1 1626 464 234 0 36 chr1 136491088 136491199 -60704233 - PB1D7 SINE Alu -2 118 12 1 1626 210 323 0 0 chr1 136491149 136491214 -60704218 - B4A SINE B4 -146 146 82 1 1626 812 182 139 0 chr1 136491504 136491691 -60703741 - B3 SINE B2 -3 213 1 1 1626 251 226 38 0 chr1 136491731 136491784 -60703648 + B3A SINE B2 70 124 -74 1 1626 504 212 112 15 chr1 136491874 136492008 -60703424 + B1_Mur3 SINE Alu 1 147 -2 1 1626 233 283 168 0 chr1 136492962 136493075 -60702357 + MIRb SINE MIR 6 137 -131 1 1626 260 222 0 0 chr1 136493224 136493278 -60702154 - B1_Mur2 SINE Alu -2 147 94 1 1626 486 0 0 0 chr1 136493282 136493336 -60702096 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1626 1156 62 0 0 chr1 136493388 136493534 -60701898 - B1_Mm SINE Alu 0 147 2 1 1626 1277 100 10 16 chr1 136493555 136493748 -60701684 - B2_Mm1t SINE B2 0 193 2 1 1626 735 114 195 0 chr1 136493754 136493877 -60701555 - B1_Mus1 SINE Alu -1 147 1 1 1626 245 234 0 0 chr1 136494660 136494707 -60700725 - B1_Mm SINE Alu -55 92 46 1 1626 903 139 118 29 chr1 136494881 136495051 -60700381 - B2_Mm2 SINE B2 -8 187 3 1 1626 944 106 105 12 chr1 136495061 136495233 -60700199 - B2_Mm2 SINE B2 0 195 8 1 1626 22 56 0 0 chr1 136496673 136496709 -60698723 + AT_rich Low_complexity Low_complexity 1 36 0 1 1626 264 324 0 13 chr1 136497511 136497586 -60697846 - B1_Mur1 SINE Alu -2 147 74 1 1626 719 207 77 6 chr1 136498434 136498604 -60696828 - B3 SINE B2 0 216 35 1 1626 944 154 0 0 chr1 136498696 136498839 -60696593 - B1_Mus1 SINE Alu -5 143 1 1 1626 234 0 0 0 chr1 136499318 136499344 -60696088 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1626 932 137 7 0 chr1 136499358 136499511 -60695921 - B2_Mm2 SINE B2 -41 154 1 1 1626 222 37 0 0 chr1 136499558 136499585 -60695847 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1626 969 55 0 0 chr1 136499585 136499713 -60695719 - B1_Mus2 SINE Alu -11 136 9 1 1626 252 247 27 20 chr1 136499614 136499763 -60695669 - ORR1B1-int LTR MaLR -755 754 605 1 1626 1486 52 5 35 chr1 136500173 136500371 -60695061 + B2_Mm1t SINE B2 2 193 0 1 1626 350 204 86 19 chr1 136500758 136500863 -60694569 + B3 SINE B2 1 112 -104 2 1626 216 0 0 0 chr1 136500980 136501004 -60694428 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1626 450 0 0 0 chr1 136501430 136501480 -60693952 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1626 531 137 0 56 chr1 136502750 136502858 -60692574 - B2_Mm1t SINE B2 0 193 92 5 1626 28 79 0 0 chr1 136502983 136503046 -60692386 + AT_rich Low_complexity Low_complexity 1 63 0 6 1626 217 321 18 0 chr1 136503138 136503194 -60692238 + ID2 SINE ID 27 83 0 7 1626 1141 113 96 0 chr1 136503205 136503382 -60692050 + B2_Mm2 SINE B2 2 195 0 8 1626 248 211 197 0 chr1 136503592 136503668 -60691764 - B4 SINE B4 -1 291 201 9 1626 370 194 15 0 chr1 136503853 136503920 -60691512 - B1F2 SINE Alu -40 109 42 1 1626 306 0 0 0 chr1 136504127 136504161 -60691271 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1626 387 330 0 10 chr1 136504603 136504704 -60690728 - B3A SINE B2 -91 107 8 1 1626 951 138 107 12 chr1 136504906 136505075 -60690357 - B2_Mm1t SINE B2 -7 186 2 1 1626 309 270 158 69 chr1 136505751 136505954 -60689478 - RMER12 LTR ERVK 0 1322 1102 1 1626 6089 63 14 1 chr1 136506150 136506959 -60688473 - RLTR22_Mus LTR ERVK -989 819 1 1 1626 25 0 0 0 chr1 136507066 136507091 -60688341 + AT_rich Low_complexity Low_complexity 1 25 0 1 1626 219 233 23 0 chr1 136507165 136507208 -60688224 - ID_B1 SINE B4 -83 141 98 1 1626 252 240 101 72 chr1 136507320 136507459 -60687973 - L1MD LINE L1 -1142 5004 4862 1 1626 251 254 0 0 chr1 136507521 136507576 -60687856 + CT-rich Low_complexity Low_complexity 2 56 0 1 1626 280 0 50 0 chr1 136507587 136507627 -60687805 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1626 570 266 91 40 chr1 136507754 136507930 -60687502 - ID_B1 SINE B4 -39 185 1 2 1626 23 0 0 0 chr1 136507941 136507964 -60687468 + AT_rich Low_complexity Low_complexity 1 23 0 2 1626 234 229 44 70 chr1 136508134 136508240 -60687192 - MIRc SINE MIR -105 163 57 2 1626 386 278 152 35 chr1 136508266 136508464 -60686968 + Lx8 LINE L1 7169 7389 -84 2 1626 1211 61 0 0 chr1 136508502 136508649 -60686783 + B1_Mus2 SINE Alu 1 147 0 2 1626 263 161 0 18 chr1 136508984 136509041 -60686391 + CT-rich Low_complexity Low_complexity 4 59 0 2 1626 220 178 0 82 chr1 136509210 136509259 -60686173 - ID4 SINE ID -9 74 30 2 1626 1150 113 26 31 chr1 136509484 136509676 -60685756 - B2_Mm2 SINE B2 -3 192 2 2 1626 923 203 27 0 chr1 136510093 136510280 -60685152 - ORR1C1 LTR MaLR -185 193 2 2 1626 406 241 0 12 chr1 136510283 136510363 -60685069 - B4 SINE B4 -212 80 2 3 1626 313 279 186 16 chr1 136510784 136510908 -60684524 + RSINE1 SINE B4 2 146 -19 3 1626 1108 76 21 0 chr1 136510998 136511143 -60684289 + B1_Mus1 SINE Alu 1 148 0 3 1626 937 232 19 14 chr1 136511190 136511404 -60684028 + B3 SINE B2 2 216 0 3 1626 671 129 186 0 chr1 136511407 136511531 -60683901 + B1_Mus2 SINE Alu 1 147 0 3 1626 469 236 111 82 chr1 136511701 136511909 -60683523 - B3 SINE B2 0 216 3 3 1626 372 59 0 0 chr1 136511926 136511977 -60683455 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1626 416 271 46 15 chr1 136511983 136512114 -60683318 - B3 SINE B2 -76 140 6 3 1626 587 272 20 13 chr1 136512978 136513127 -60682305 - B3A SINE B2 -35 163 14 3 1626 381 340 10 0 chr1 136513235 136513335 -60682097 + B1F SINE Alu 1 101 -48 3 1626 1503 57 0 30 chr1 136513531 136513729 -60681703 - B2_Mm1a SINE B2 0 193 2 4 1626 255 215 0 0 chr1 136514014 136514079 -60681353 + T-rich Low_complexity Low_complexity 1 65 0 4 1626 705 157 119 0 chr1 136514081 136514215 -60681217 - B1_Mur4 SINE Alu 0 150 1 4 1626 357 288 81 50 chr1 136514735 136514896 -60680536 + B4 SINE B4 26 191 -101 4 1626 611 194 9 9 chr1 136514806 136514915 -60680517 + PB1D9 SINE Alu 12 120 0 4 1626 188 111 28 0 chr1 136515041 136515077 -60680355 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1626 799 156 234 11 chr1 136515879 136516054 -60679378 + B3 SINE B2 3 216 0 4 1626 590 226 122 14 chr1 136516645 136516793 -60678639 - B3 SINE B2 -6 210 47 4 1626 338 296 9 44 chr1 136516908 136517021 -60678411 + MER5A DNA MER1_type 81 189 0 4 1626 663 213 142 0 chr1 136517943 136518126 -60677306 - B3 SINE B2 -6 210 2 4 1626 255 31 0 0 chr1 136518332 136518364 -60677068 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1626 216 283 0 32 chr1 136518826 136518888 -60676544 + ID4 SINE ID 2 61 -22 5 1626 570 173 144 0 chr1 136518937 136519041 -60676391 - B1_Mur2 SINE Alu -30 119 1 5 1626 235 216 129 129 chr1 136518953 136519054 -60676378 - MT2B LTR ERVL -345 256 156 5 1626 350 181 107 8 chr1 136519193 136519276 -60676156 + PB1D9 SINE Alu 31 115 -34 5 1626 424 224 69 30 chr1 136520492 136520593 -60674839 - ID_B1 SINE B4 -119 105 1 5 1626 39 0 0 0 chr1 136520613 136520652 -60674780 + AT_rich Low_complexity Low_complexity 1 39 0 5 1626 210 242 61 61 chr1 136521882 136521948 -60673484 - RSINE1 SINE B4 -71 94 29 5 1626 228 265 211 19 chr1 136521959 136522063 -60673369 - ID_B1 SINE B4 0 224 101 5 1626 547 315 70 120 chr1 136522344 136522636 -60672796 - B4A SINE B4 -14 278 7 5 1626 609 169 178 53 chr1 136522779 136522948 -60672484 - B3 SINE B2 -5 190 1 6 1626 413 267 0 82 chr1 136522966 136523064 -60672368 - RSINE1 SINE B4 -74 91 2 6 1626 264 313 108 0 chr1 136523099 136523182 -60672250 + PB1 SINE Alu 1 92 -35 6 1626 431 229 47 19 chr1 136523501 136523608 -60671824 - PB1D10 SINE Alu -7 110 1 6 1626 192 77 0 0 chr1 136523778 136523804 -60671628 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1626 1080 166 80 5 chr1 136524396 136524596 -60670836 - B3 SINE B2 0 216 2 6 1626 341 262 38 0 chr1 136524598 136524678 -60670754 - ID_B1 SINE B4 -62 162 80 6 1626 186 133 0 0 chr1 136524684 136524714 -60670718 + (CGTG)n Simple_repeat Simple_repeat 1 30 0 6 1626 379 258 140 0 chr1 136524723 136524816 -60670616 - ID_B1 SINE B4 -28 196 91 6 1626 1212 47 0 20 chr1 136525825 136525976 -60669456 - B1_Mus1 SINE Alu 0 148 1 6 1626 419 295 141 28 chr1 136526093 136526306 -60669126 - B4A SINE B4 -55 237 1 7 1626 1152 8 23 0 chr1 136526351 136526481 -60668951 + B1_Mm SINE Alu 5 137 -10 7 1626 215 0 67 0 chr1 136526481 136526511 -60668921 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1626 189 0 0 0 chr1 136528686 136528707 -60666725 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1626 804 137 30 0 chr1 136529681 136529812 -60665620 - B1_Mur4 SINE Alu -10 140 6 7 1626 580 308 6 66 chr1 136529873 136530054 -60665378 - ID_B1 SINE B4 -44 180 11 7 1626 740 191 189 16 chr1 136530403 136530594 -60664838 + URR1B DNA MER1_type 2 225 0 7 1626 270 257 43 0 chr1 136530976 136531046 -60664386 + PB1D7 SINE Alu 24 96 -24 7 1626 180 0 0 0 chr1 136533331 136533351 -60662081 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 7 1626 237 232 111 42 chr1 136533684 136533756 -60661676 - MTE2b LTR MaLR -83 296 220 7 1626 240 254 34 0 chr1 136533780 136533839 -60661593 - MTE2b LTR MaLR -311 68 8 7 1626 291 303 149 15 chr1 136534210 136534344 -60661088 - RSINE1 SINE B4 -10 155 4 8 1626 667 181 259 24 chr1 136534468 136534638 -60660794 - B3 SINE B2 -6 210 1 8 1626 374 254 166 48 chr1 136534663 136534808 -60660624 - B3A SINE B2 -35 163 2 8 1626 397 258 134 15 chr1 136534854 136534988 -60660444 - B3 SINE B2 -66 150 1 8 1626 554 259 38 94 chr1 136535668 136535690 -60659742 - ID_B1 SINE B4 -43 249 183 8 1626 758 153 71 28 chr1 136535690 136535831 -60659601 - B1_Mur3 SINE Alu 0 149 3 8 1626 554 259 38 94 chr1 136535831 136535870 -60659562 - ID_B1 SINE B4 -43 182 55 8 1626 197 225 78 78 chr1 136535872 136535949 -60659483 + MIRb SINE MIR 24 100 -168 8 1626 242 341 45 0 chr1 136536010 136536098 -60659334 + B1F1 SINE Alu 2 93 -56 8 1626 254 267 26 39 chr1 136536581 136536659 -60658773 + PB1D10 SINE Alu 41 117 0 8 1626 417 261 28 42 chr1 136537679 136537823 -60657609 - B1F SINE Alu -7 142 1 8 1626 270 0 0 0 chr1 136538105 136538135 -60657297 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1626 682 254 72 31 chr1 136538209 136538404 -60657028 - B3 SINE B2 0 216 14 9 1626 865 200 57 76 chr1 136539663 136539874 -60655558 - B3 SINE B2 -7 209 3 9 1626 621 140 128 1 chr1 136539976 136540093 -60655339 - B1_Mur2 SINE Alu -10 139 16 9 1626 207 0 0 0 chr1 136540677 136540700 -60654732 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 9 1626 225 0 0 0 chr1 136540753 136540778 -60654654 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1626 357 24 0 0 chr1 136541605 136541647 -60653785 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1626 201 74 0 0 chr1 136541688 136541715 -60653717 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 9 1626 794 125 55 0 chr1 136542062 136542190 -60653242 + B1_Mur4 SINE Alu 2 136 -14 9 1626 484 267 43 0 chr1 136542228 136542344 -60653088 + RSINE1 SINE B4 2 122 -43 9 1626 473 0 18 0 chr1 136542344 136542401 -60653031 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1626 24 32 0 0 chr1 136542421 136542452 -60652980 + AT_rich Low_complexity Low_complexity 1 31 0 1 1626 228 240 23 46 chr1 136543082 136543213 -60652219 + (CCCG)n Simple_repeat Simple_repeat 1 128 0 1 1626 199 184 0 70 chr1 136545813 136545879 -60649553 + MIRm SINE MIR 9 71 -205 1 1626 582 307 24 110 chr1 136545885 136546222 -60649210 + MTE2b LTR MaLR 1 308 -71 1 1626 273 274 48 0 chr1 136546236 136546320 -60649112 + MTE2b LTR MaLR 292 379 0 1 1626 255 61 0 0 chr1 136546345 136546378 -60649054 + (TCCCC)n Simple_repeat Simple_repeat 4 36 0 1 1626 602 258 79 30 chr1 136546429 136546593 -60648839 - ID_B1 SINE B4 -52 172 1 1 1626 624 211 53 0 chr1 136546697 136546830 -60648602 - B1F1 SINE Alu -1 148 9 1 1626 819 162 7 0 chr1 136546864 136547006 -60648426 - B1_Mus1 SINE Alu 0 148 6 1 1626 217 313 126 58 chr1 136547018 136547208 -60648224 - L2b LINE L2 -17 3358 3156 1 1626 1473 73 10 5 chr1 136547224 136547417 -60648015 - B2_Mm2 SINE B2 0 195 2 1 1626 211 259 213 65 chr1 136547678 136547847 -60647585 + MIR SINE MIR 29 222 -40 1 1626 225 0 0 0 chr1 136549193 136549218 -60646214 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1626 484 286 48 0 chr1 136549226 136549352 -60646080 - B1F SINE Alu -17 132 1 1 1626 21 0 0 0 chr1 136549352 136549373 -60646059 + AT_rich Low_complexity Low_complexity 1 21 0 1 1626 818 187 7 0 chr1 136549373 136549512 -60645920 + B1_Mur1 SINE Alu 10 149 0 1 1626 244 264 28 0 chr1 136549518 136549590 -60645842 - L1MA5 LINE L1 -6 6294 6221 1 1626 240 35 0 0 chr1 136549684 136549713 -60645719 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1626 1314 297 135 95 chr1 136550912 136551205 -60644227 + Charlie1a DNA MER1_type 2 335 -1120 1 1626 252 0 0 0 chr1 136551205 136551233 -60644199 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 1 1626 1314 269 206 97 chr1 136551233 136551856 -60643576 + Charlie1a DNA MER1_type 336 1020 -435 1 1626 390 232 0 0 chr1 136551860 136551929 -60643503 + ID_B1 SINE B4 85 153 -71 1 1626 608 264 8 0 chr1 136551957 136552082 -60643350 + RSINE1 SINE B4 3 128 -37 1 1626 523 71 16 124 chr1 136552152 136552346 -60643086 + CT-rich Low_complexity Low_complexity 5 177 0 1 1626 364 236 89 11 chr1 136553043 136553133 -60642299 + PB1D10 SINE Alu 21 117 0 1 1626 204 190 83 33 chr1 136553860 136553920 -60641512 - L3b LINE CR1 -199 283 221 1 1626 1315 136 23 5 chr1 136554393 136554614 -60640818 + URR1B DNA MER1_type 1 225 0 1 1626 22 0 0 0 chr1 136554822 136554844 -60640588 + AT_rich Low_complexity Low_complexity 1 22 0 1 1626 339 228 92 42 chr1 136554844 136554907 -60640525 - L1MA9 LINE L1 0 6312 6244 1 1626 2542 133 60 10 chr1 136554907 136555308 -60640124 + MTC LTR MaLR 1 421 0 1 1626 339 228 92 42 chr1 136555308 136555363 -60640069 - L1MA9 LINE L1 -69 6243 6188 1 1626 396 0 0 0 chr1 136556308 136556352 -60639080 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1626 4083 117 116 23 chr1 136556770 136557462 -60637970 - RMER6A LTR ERVK 0 756 1 1 1626 225 278 110 9 chr1 136557552 136557661 -60637771 + L3b LINE CR1 4189 4321 -187 1 1626 577 297 66 20 chr1 136559063 136559259 -60636173 + B3 SINE B2 1 205 -11 1 1626 325 267 19 38 chr1 136559325 136559430 -60636002 + B4 SINE B4 3 105 -187 1 1626 996 257 24 0 chr1 136559463 136559669 -60635763 + B3 SINE B2 1 211 -5 1 1626 407 190 5 11 chr1 136559885 136559975 -60635457 + ORR1C2 LTR MaLR 6 99 -260 1 1626 251 128 0 0 chr1 136559971 136560010 -60635422 - MT2B LTR ERVL -4 580 542 1 1626 320 200 0 12 chr1 136560019 136560100 -60635332 + CT-rich Low_complexity Low_complexity 2 81 0 1 1626 1004 261 31 53 chr1 136560122 136560430 -60635002 - MT2B LTR ERVL -55 546 197 1 1626 612 209 82 7 chr1 136560430 136560565 -60634867 + B1_Mur4 SINE Alu 5 149 -1 1 1626 348 306 80 31 chr1 136560565 136560600 -60634832 - MT2B LTR ERVL -297 196 162 1 1626 255 93 0 0 chr1 136560636 136560679 -60634753 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1626 242 140 35 17 chr1 136560690 136560748 -60634684 + A-rich Low_complexity Low_complexity 5 63 0 1 1626 349 197 14 0 chr1 136560749 136560820 -60634612 - MT2B LTR ERVL -449 84 13 1 1626 960 207 124 4 chr1 136560818 136560946 -60634486 + ORR1C2 LTR MaLR 96 234 -150 1 1626 331 21 42 0 chr1 136560946 136560994 -60634438 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 1 1626 960 207 124 4 chr1 136560994 136561122 -60634310 + ORR1C2 LTR MaLR 235 382 -2 1 1626 271 111 22 0 chr1 136561125 136561170 -60634262 + ORR1C2 LTR MaLR 338 383 -1 1 1626 3017 53 19 0 chr1 136561686 136562060 -60633372 + L1Md_F2 LINE L1 6202 6582 0 1 1626 201 272 238 8 chr1 136563047 136563173 -60632259 + L3 LINE CR1 4332 4486 -3 1 1626 673 29 38 9 chr1 136563466 136563571 -60631861 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1626 495 0 0 0 chr1 136563571 136563625 -60631807 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1626 1368 75 0 0 chr1 136564344 136564788 -60630644 + (TG)n Simple_repeat Simple_repeat 1 444 0 1 1626 216 338 38 0 chr1 136565165 136565245 -60630187 - L3b LINE CR1 -183 299 217 1 1626 1588 141 187 60 chr1 136565833 136566165 -60629267 + ORR1D1 LTR MaLR 1 374 0 1 1626 380 344 75 72 chr1 136566313 136566658 -60628774 - ORR1E LTR MaLR -6 353 8 1 1626 498 136 0 0 chr1 136566768 136566849 -60628583 + (TCC)n Simple_repeat Simple_repeat 2 82 0 1 1626 470 185 33 0 chr1 136566859 136566951 -60628481 - B1F1 SINE Alu -52 97 3 1 1626 216 255 0 18 chr1 136567221 136567277 -60628155 - L2c LINE L2 -41 3346 3292 1 1626 430 164 0 0 chr1 136567728 136567801 -60627631 + PB1D10 SINE Alu 43 115 -2 1 1626 693 274 27 58 chr1 136567804 136568029 -60627403 + ID_B1 SINE B4 5 222 -2 1 1626 248 268 0 0 chr1 136569705 136569761 -60625671 + L1M2 LINE L1 5669 5724 -567 1 1626 284 263 29 78 chr1 136569761 136569843 -60625589 - B3A SINE B2 -79 119 39 1 1626 1592 62 0 0 chr1 136569843 136570038 -60625394 - B2_Mm2 SINE B2 0 195 1 1 1626 284 302 21 104 chr1 136570038 136570086 -60625346 - B3A SINE B2 -160 38 1 1 1626 969 239 0 10 chr1 136570632 136570831 -60624601 - B3 SINE B2 -17 199 3 1 1626 369 95 0 0 chr1 136571393 136571456 -60623976 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 1626 975 280 22 67 chr1 136572206 136572377 -60623055 - MTD LTR MaLR -63 356 205 1 1626 1182 129 48 11 chr1 136572377 136572565 -60622867 - B2_Mm2 SINE B2 0 195 1 1 1626 975 280 22 67 chr1 136572565 136572764 -60622668 - MTD LTR MaLR -215 204 3 1 1626 234 355 34 23 chr1 136573511 136573687 -60621745 - L2 LINE L2 -565 2854 2677 1 1626 320 358 146 15 chr1 136573843 136574110 -60621322 - MLT1A0 LTR MaLR -18 347 46 1 1626 989 40 8 0 chr1 136574778 136574904 -60620528 + (GA)n Simple_repeat Simple_repeat 2 128 0 1 1626 542 226 147 8 chr1 136574952 136575092 -60620340 + B3A SINE B2 4 156 -42 1 1626 264 100 0 0 chr1 136575092 136575132 -60620300 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1626 498 238 105 23 chr1 136575132 136575163 -60620269 + B2_Mm2 SINE B2 153 188 -7 1 1626 218 213 0 0 chr1 136575341 136575388 -60620044 + PB1D10 SINE Alu 2 48 -69 1 1626 446 189 78 0 chr1 136575429 136575519 -60619913 + PB1D7 SINE Alu 13 109 -11 1 1626 225 0 0 0 chr1 136575519 136575544 -60619888 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1626 1218 97 62 17 chr1 136575730 136575909 -60619523 - B2_Mm1t SINE B2 -6 187 1 1 1626 525 236 18 9 chr1 136575952 136576063 -60619369 + B3 SINE B2 54 165 -51 1 1626 258 105 0 0 chr1 136576063 136576101 -60619331 + (CATG)n Simple_repeat Simple_repeat 2 39 0 1 1626 549 239 296 11 chr1 136576162 136576449 -60618983 - MLT1G1 LTR MaLR -167 412 44 1 1627 186 118 0 0 chr1 136577221 136577255 -60618177 + (G)n Simple_repeat Simple_repeat 1 34 0 1 1627 295 273 0 38 chr1 136578127 136578207 -60617225 + ID4 SINE ID 1 77 -6 1 1627 820 248 48 19 chr1 136578258 136578468 -60616964 + B3 SINE B2 1 216 0 1 1627 358 247 237 0 chr1 136579769 136579862 -60615570 - PB1D10 SINE Alu -2 115 1 1 1627 378 22 0 0 chr1 136579940 136579985 -60615447 - L1Md_F2 LINE L1 -560 6022 5978 1 1627 4352 66 7 7 chr1 136579985 136580536 -60614896 + L1Md_F2 LINE L1 6020 6570 -12 1 1627 399 21 0 0 chr1 136580563 136580611 -60614821 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1627 950 226 0 0 chr1 136580616 136580780 -60614652 - RSINE1 SINE B4 0 165 2 1 1627 251 320 92 26 chr1 136581195 136581468 -60613964 - L1MEg LINE L1 -4862 1222 932 1 1627 934 187 85 5 chr1 136581504 136581692 -60613740 - B3 SINE B2 -12 204 2 1 1627 253 241 11 92 chr1 136581703 136581790 -60613642 - ID4 SINE ID -2 81 2 1 1627 439 254 180 7 chr1 136581796 136581935 -60613497 - MLT1A LTR MaLR -211 163 1 1 1627 582 234 62 8 chr1 136582224 136582353 -60613079 - B1F SINE Alu -13 136 1 1 1627 213 292 180 0 chr1 136582378 136582394 -60613038 - ID_B1 SINE B4 -29 195 91 1 1627 270 206 192 0 chr1 136582394 136582467 -60612965 - PB1D10 SINE Alu -21 96 10 1 1627 1023 38 113 8 chr1 136582495 136582628 -60612804 - B1_Mm SINE Alu 0 147 1 1 1627 853 18 18 0 chr1 136582693 136582804 -60612628 + (TC)n Simple_repeat Simple_repeat 2 114 0 1 1627 217 322 81 73 chr1 136582896 136583020 -60612412 - B3A SINE B2 0 198 74 1 1627 481 237 85 43 chr1 136583175 136583316 -60612116 - B1F SINE Alu -2 147 1 1 1627 1758 136 133 40 chr1 136584794 136585147 -60610285 + ORR1B1 LTR MaLR 1 386 -8 1 1627 253 309 162 26 chr1 136586078 136586307 -60609125 + LTR33A LTR ERVL 242 501 -19 1 1627 549 239 0 0 chr1 136586308 136586488 -60608944 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1627 207 217 0 0 chr1 136586503 136586563 -60608869 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1627 859 0 28 0 chr1 136587491 136587597 -60607835 + (TTTTA)n Simple_repeat Simple_repeat 2 110 0 1 1627 335 186 57 0 chr1 136587774 136587844 -60607588 - HAL1-3A_ME LINE L1 -809 2049 1976 1 1627 293 0 27 0 chr1 136587849 136587886 -60607546 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 1 1627 880 226 43 33 chr1 136587886 136588097 -60607335 - ID_B1 SINE B4 -11 213 1 1 1627 1289 58 67 28 chr1 136588217 136588395 -60607037 + B2_Mm2 SINE B2 2 186 -9 2 1627 356 317 17 35 chr1 136588440 136588613 -60606819 + L1ME2 LINE L1 5768 5937 -227 2 1627 516 152 132 18 chr1 136588627 136588741 -60606691 + ID_B1 SINE B4 86 212 -12 2 1627 312 27 0 0 chr1 136588744 136588781 -60606651 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1627 465 182 65 116 chr1 136588781 136588814 -60606618 + B1F1 SINE Alu 110 147 -2 2 1627 402 195 0 0 chr1 136588961 136589048 -60606384 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1627 751 191 80 6 chr1 136589058 136589254 -60606178 - B3A SINE B2 -2 214 5 2 1627 239 167 56 0 chr1 136589422 136589476 -60605956 - BC1_Mm scRNA scRNA -95 57 1 2 1627 211 317 0 16 chr1 136589985 136590046 -60605386 - L2a LINE L2 -7 3419 3360 2 1627 703 317 35 4 chr1 136590126 136590354 -60605078 - Lx7 LINE L1 -883 6813 6579 2 1627 1483 284 140 13 chr1 136590317 136590924 -60604508 + Lx8 LINE L1 6789 7472 -1 2 1627 467 252 163 0 chr1 136591337 136591460 -60603972 + ID_B1 SINE B4 81 223 -1 2 1627 275 324 0 99 chr1 136591338 136591499 -60603933 + B1_Mur3 SINE Alu 1 145 -4 2 1627 578 238 135 0 chr1 136591545 136591671 -60603761 - B1F2 SINE Alu -2 147 5 2 1627 1632 26 0 5 chr1 136592372 136592563 -60602869 + B2_Mm1a SINE B2 2 191 -2 2 1627 669 116 0 0 chr1 136592571 136592666 -60602766 + B1_Mur4 SINE Alu 1 95 -55 2 1627 330 26 0 0 chr1 136592669 136592708 -60602724 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1627 617 188 49 63 chr1 136592728 136592870 -60602562 - ORR1C2 LTR MaLR -10 374 235 2 1627 254 245 0 0 chr1 136593207 136593260 -60602172 - ID_B1 SINE B4 -1 223 171 2 1627 735 189 0 83 chr1 136593282 136593438 -60601994 - B1_Mur2 SINE Alu 0 149 7 2 1627 438 278 0 122 chr1 136593288 136593460 -60601972 - ID_B1 SINE B4 -4 220 70 2 1627 258 280 301 0 chr1 136593496 136593589 -60601843 - RSINE1 SINE B4 -43 122 2 2 1627 252 326 26 77 chr1 136593833 136593989 -60601443 + L2c LINE L2 3240 3387 0 2 1627 386 216 0 0 chr1 136594116 136594197 -60601235 + ID4_ SINE ID 12 92 -60 2 1627 533 227 0 0 chr1 136594985 136595082 -60600350 - PB1D10 SINE Alu -18 99 3 2 1627 264 271 40 40 chr1 136595084 136595184 -60600248 + L2a LINE L2 3327 3426 0 2 1627 188 0 74 0 chr1 136595513 136595540 -60599892 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 2 1627 318 279 62 18 chr1 136595667 136595780 -60599652 - MIRc SINE MIR -87 181 64 2 1627 513 211 18 12 chr1 136596614 136596734 -60598698 - PB1D10 SINE Alu -3 124 1 2 1627 265 198 17 144 chr1 136596629 136596747 -60598685 - MT2B LTR ERVL -345 256 154 2 1627 315 71 0 0 chr1 136597523 136597565 -60597867 + (AGGGGG)n Simple_repeat Simple_repeat 2 43 0 2 1627 236 246 236 0 chr1 136597802 136597912 -60597520 - MIR3 SINE MIR -24 184 49 2 1627 226 250 58 14 chr1 136598128 136598197 -60597235 + RLTR22_Mur LTR ERVK 1307 1378 -470 2 1627 590 245 75 21 chr1 136598552 136598740 -60596692 - B3A SINE B2 0 198 1 2 1627 1369 149 18 5 chr1 136598804 136599026 -60596406 - URR1B DNA MER1_type 0 225 1 2 1627 210 369 39 0 chr1 136599062 136599165 -60596267 + L2c LINE L2 3059 3165 -222 2 1627 275 250 61 20 chr1 136599871 136599969 -60595463 - MIR SINE MIR -85 123 22 2 1627 185 393 13 32 chr1 136600807 136600962 -60594470 + L2 LINE L2 2328 2479 -940 2 1627 220 133 22 22 chr1 136602098 136602144 -60593288 + MIRc SINE MIR 98 143 -125 2 1627 414 0 0 0 chr1 136604697 136604743 -60590689 + (CAA)n Simple_repeat Simple_repeat 2 47 0 2 1627 351 0 0 0 chr1 136604743 136604782 -60590650 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1627 486 0 0 0 chr1 136606414 136606468 -60588964 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1627 186 254 68 0 chr1 136606745 136606804 -60588628 + MIRm SINE MIR 71 133 -143 2 1627 237 253 96 7 chr1 136607034 136607146 -60588286 + MIR3 SINE MIR 70 189 -19 2 1627 237 294 128 34 chr1 136607602 136607750 -60587682 + MIR3 SINE MIR 35 196 -12 2 1627 379 358 107 0 chr1 136607905 136608120 -60587312 + MIR SINE MIR 25 262 0 2 1627 196 247 111 49 chr1 136608620 136608701 -60586731 + MIR3 SINE MIR 77 162 -46 2 1627 242 331 22 68 chr1 136608848 136608950 -60586482 + MIR SINE MIR 58 157 -111 2 1627 1671 37 0 0 chr1 136608950 136609141 -60586291 - B2_Mm1a SINE B2 -1 192 2 2 1627 242 329 20 85 chr1 136609141 136609212 -60586220 + MIR SINE MIR 152 215 -47 2 1627 206 356 79 0 chr1 136609724 136609825 -60585607 + L3b LINE CR1 189 297 -185 2 1627 186 311 13 13 chr1 136611395 136611470 -60583962 + MIR SINE MIR 124 198 -64 2 1627 192 152 0 0 chr1 136612758 136612791 -60582641 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 2 1627 404 310 6 116 chr1 136612792 136612956 -60582476 - B1F SINE Alu -3 146 1 2 1627 221 254 14 29 chr1 136613044 136613113 -60582319 + ID4_ SINE ID 6 73 -10 2 1627 653 230 16 0 chr1 136613052 136613178 -60582254 + RSINE1 SINE B4 15 142 -23 2 1627 23 33 0 0 chr1 136613211 136613241 -60582191 + AT_rich Low_complexity Low_complexity 1 30 0 2 1627 270 207 0 0 chr1 136613344 136613402 -60582030 + CT-rich Low_complexity Low_complexity 4 61 0 2 1627 570 295 51 11 chr1 136613415 136613593 -60581839 - ID_B1 SINE B4 -37 187 3 2 1627 345 361 29 21 chr1 136613666 136613909 -60581523 - L1MB8 LINE L1 -7 6171 5927 2 1627 242 342 83 13 chr1 136614005 136614162 -60581270 - L1MB8 LINE L1 -387 5791 5624 2 1627 28 29 0 0 chr1 136614167 136614202 -60581230 + AT_rich Low_complexity Low_complexity 1 35 0 2 1627 484 302 53 7 chr1 136614216 136614366 -60581066 - RSINE1 SINE B4 -6 159 3 2 1627 621 179 38 0 chr1 136614377 136614483 -60580949 - B1_Mur1 SINE Alu -37 112 3 2 1627 754 267 10 44 chr1 136614488 136614692 -60580740 - B3A SINE B2 0 198 2 2 1627 246 215 44 44 chr1 136614760 136614828 -60580604 - MIR SINE MIR -81 187 113 2 1627 359 160 13 13 chr1 136616150 136616226 -60579206 - PB1D10 SINE Alu -2 115 40 2 1627 197 361 40 30 chr1 136616922 136617022 -60578410 - L3 LINE CR1 -122 4367 4267 2 1627 1178 49 21 0 chr1 136617052 136617196 -60578236 - B1_Mm SINE Alu 0 147 1 2 1627 794 209 0 0 chr1 136618710 136618849 -60576583 - B1_Mus1 SINE Alu -9 139 1 2 1627 1433 138 18 9 chr1 136618904 136619123 -60576309 + URR1B DNA MER1_type 5 225 0 2 1627 233 319 32 0 chr1 136619302 136619396 -60576036 - MIR SINE MIR -97 165 69 2 1627 270 0 0 0 chr1 136619962 136619992 -60575440 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1627 217 180 0 0 chr1 136620026 136620076 -60575356 + MIRc SINE MIR 117 169 -99 2 1627 738 167 17 6 chr1 136620970 136621145 -60574287 + (CCCA)n Simple_repeat Simple_repeat 4 180 0 2 1627 636 174 6 17 chr1 136621169 136621350 -60574082 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 2 1627 222 150 0 0 chr1 136621362 136621402 -60574030 + (CCCA)n Simple_repeat Simple_repeat 3 42 0 2 1627 414 0 0 0 chr1 136622682 136622728 -60572704 + (CATA)n Simple_repeat Simple_repeat 4 49 0 2 1627 182 33 67 0 chr1 136623134 136623164 -60572268 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 2 1627 188 275 40 36 chr1 136623955 136624050 -60571382 - MIR SINE MIR -146 130 34 2 1627 212 281 64 52 chr1 136625760 136625860 -60569572 + MIR SINE MIR 26 119 -149 2 1627 224 312 65 13 chr1 136626507 136626639 -60568793 + MIR SINE MIR 2 136 -132 2 1627 287 119 51 0 chr1 136627039 136627098 -60568334 - Lx7 LINE L1 -267 7429 7368 2 1627 882 171 56 46 chr1 136627325 136627521 -60567911 - B3A SINE B2 0 198 1 2 1627 245 169 17 0 chr1 136628232 136628291 -60567141 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 1627 360 271 138 7 chr1 136628324 136628476 -60566956 - Lx8 LINE L1 -2 7471 7300 2 1627 251 242 61 0 chr1 136628472 136628538 -60566894 - Lx8 LINE L1 -323 7150 7081 2 1627 494 218 0 29 chr1 136628571 136628675 -60566757 + B3A SINE B2 1 101 -97 2 1627 2874 252 70 36 chr1 136628682 136629244 -60566188 - Lx8 LINE L1 -422 7051 6475 2 1627 2388 134 19 3 chr1 136629244 136629612 -60565820 - ORR1D1 LTR MaLR 0 374 1 2 1627 2874 290 73 46 chr1 136629612 136630005 -60565427 - Lx8 LINE L1 -1218 6478 6068 2 1627 279 133 0 0 chr1 136630936 136630981 -60564451 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 1627 588 259 21 0 chr1 136631373 136631516 -60563916 + RSINE1 SINE B4 2 147 -18 2 1627 1485 59 11 5 chr1 136631610 136631796 -60563636 - B2_Mm2 SINE B2 -8 187 1 2 1627 215 245 0 102 chr1 136632491 136632668 -60562764 + CT-rich Low_complexity Low_complexity 2 160 0 2 1627 780 11 0 0 chr1 136634504 136634593 -60560839 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 2 1627 482 280 104 22 chr1 136634955 136635225 -60560207 + L1M4 LINE L1 4957 5248 -898 2 1627 325 216 50 75 chr1 136635298 136635378 -60560054 + L1M4 LINE L1 5231 5308 -838 2 1627 232 312 16 0 chr1 136635380 136635444 -60559988 + RSINE1 SINE B4 84 148 -17 2 1627 1057 68 34 0 chr1 136635525 136635673 -60559759 + B2_Mm2 SINE B2 2 154 -41 2 1627 561 30 0 0 chr1 136635674 136635741 -60559691 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2 1627 395 155 29 10 chr1 136636091 136636195 -60559237 + (TA)n Simple_repeat Simple_repeat 1 106 0 2 1627 254 279 106 8 chr1 136636799 136636922 -60558510 + MIRb SINE MIR 23 157 -111 2 1627 1370 105 5 0 chr1 136637123 136637314 -60558118 - B2_Mm1a SINE B2 0 193 2 2 1627 432 0 0 0 chr1 136638234 136638282 -60557150 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1627 189 74 0 0 chr1 136638475 136638502 -60556930 + (GAA)n Simple_repeat Simple_repeat 2 28 0 2 1627 225 335 0 5 chr1 136639328 136639554 -60555878 + (TG)n Simple_repeat Simple_repeat 1 224 0 2 1627 405 0 0 0 chr1 136644670 136644715 -60550717 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1627 726 201 38 38 chr1 136647704 136647890 -60547542 + MER53 DNA hAT 4 189 -4 3 1627 351 0 0 0 chr1 136653293 136653332 -60542100 + (CAG)n Simple_repeat Simple_repeat 2 40 0 3 1627 486 213 64 0 chr1 136656041 136656135 -60539297 - PB1D10 SINE Alu -6 111 12 3 1627 1331 143 36 27 chr1 136658523 136658746 -60536686 + URR1B DNA MER1_type 1 225 0 3 1627 938 188 92 20 chr1 136659161 136659357 -60536075 - B3 SINE B2 -6 210 1 3 1627 262 305 52 185 chr1 136660042 136660236 -60535196 - MER58B DNA MER1_type -1 340 194 3 1627 1146 68 0 7 chr1 136660236 136660383 -60535049 - B1_Mus2 SINE Alu 0 147 2 3 1627 262 305 52 185 chr1 136660383 136660474 -60534958 - MER58B DNA MER1_type -148 193 93 3 1627 583 134 0 23 chr1 136660545 136660655 -60534777 - B1_Mur3 SINE Alu -14 106 1 3 1627 243 114 68 0 chr1 136660625 136660669 -60534763 - MT2B LTR ERVL -314 287 241 3 1627 345 315 47 23 chr1 136661930 136662102 -60533330 + MER5B DNA MER1_type 3 178 0 3 1627 992 180 97 10 chr1 136665260 136665456 -60529976 - B3 SINE B2 0 216 4 3 1627 23 0 0 0 chr1 136665459 136665482 -60529950 + AT_rich Low_complexity Low_complexity 1 23 0 3 1627 1364 76 49 0 chr1 136665587 136665771 -60529661 + B2_Mm2 SINE B2 1 193 -2 3 1627 1146 77 0 0 chr1 136665771 136665913 -60529519 + B1_Mus1 SINE Alu 1 143 -5 3 1627 387 0 0 0 chr1 136666217 136666260 -60529172 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1627 513 0 0 0 chr1 136666260 136666316 -60529116 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1627 226 146 0 0 chr1 136666368 136666409 -60529023 - ID_B1 SINE B4 -8 216 176 3 1627 321 275 0 12 chr1 136666444 136666525 -60528907 - ID2 SINE ID -2 81 2 3 1627 595 200 64 0 chr1 136666599 136666709 -60528723 - PB1D9 SINE Alu -1 119 3 3 1627 37 62 0 0 chr1 136666723 136666788 -60528644 + AT_rich Low_complexity Low_complexity 1 65 0 3 1627 887 247 67 0 chr1 136666802 136666996 -60528436 - B3 SINE B2 -7 209 3 3 1627 939 93 0 0 chr1 136667774 136667914 -60527518 + (TTCC)n Simple_repeat Simple_repeat 4 143 0 3 1627 294 240 0 96 chr1 136669440 136669523 -60525909 - RSINE1 SINE B4 0 165 91 3 1627 222 208 0 0 chr1 136669573 136669621 -60525811 - B1_Mur1 SINE Alu -5 144 97 3 1627 225 0 0 0 chr1 136669844 136669869 -60525563 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1627 189 0 0 0 chr1 136673376 136673397 -60522035 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1627 333 0 0 0 chr1 136674080 136674117 -60521315 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1627 209 108 27 0 chr1 136674117 136674154 -60521278 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1627 341 22 22 0 chr1 136675413 136675459 -60519973 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1627 1170 37 0 0 chr1 136675459 136675595 -60519837 - B1_Mus1 SINE Alu -12 136 1 3 1627 522 0 0 0 chr1 136675640 136675698 -60519734 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 3 1627 235 235 59 0 chr1 136675706 136675757 -60519675 - PB1D7 SINE Alu -2 118 65 3 1627 518 267 60 0 chr1 136675713 136675829 -60519603 - ID_B1 SINE B4 -9 215 93 3 1627 593 211 214 8 chr1 136675941 136676260 -60519172 - MTD LTR MaLR 0 419 1 3 1627 517 63 38 0 chr1 136676282 136676361 -60519071 - L1Md_F2 LINE L1 0 6582 6501 3 1627 517 277 56 14 chr1 136676606 136676749 -60518683 - B1F SINE Alu 0 149 1 3 1627 3211 43 8 2 chr1 136677020 136677414 -60518018 + MTA_Mm LTR MaLR 1 396 0 3 1627 374 301 41 0 chr1 136677540 136677663 -60517769 - RSINE1 SINE B4 -35 130 3 3 1627 24 0 0 0 chr1 136678143 136678167 -60517265 + AT_rich Low_complexity Low_complexity 1 24 0 3 1627 213 39 0 0 chr1 136679868 136679894 -60515538 + (CCCA)n Simple_repeat Simple_repeat 3 28 0 3 1627 468 302 60 0 chr1 136679899 136680048 -60515384 - RSINE1 SINE B4 0 165 8 3 1627 366 23 0 0 chr1 136684411 136684454 -60510978 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1627 1232 48 0 0 chr1 136685596 136685743 -60509689 + B1_Mus1 SINE Alu 2 148 0 3 1627 409 113 0 0 chr1 136685820 136685882 -60509550 - RMER1B Other Other -16 1050 989 3 1627 1101 146 111 0 chr1 136685877 136686076 -60509356 - RMER1B Other Other -194 872 652 3 1627 339 273 30 10 chr1 136686082 136686182 -60509250 - RSINE1 SINE B4 -61 104 3 3 1627 513 256 7 22 chr1 136686382 136686518 -60508914 + RSINE1 SINE B4 3 136 -29 3 1627 1262 107 37 5 chr1 136687186 136687374 -60508058 - B2_Mm2 SINE B2 0 195 2 3 1627 297 86 21 36 chr1 136687376 136687444 -60507988 - PB1D9 SINE Alu -1 119 52 3 1627 282 29 0 0 chr1 136687535 136687570 -60507862 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 1627 23 78 0 0 chr1 136688689 136688740 -60506692 + AT_rich Low_complexity Low_complexity 1 51 0 3 1627 204 349 102 8 chr1 136689242 136689369 -60506063 + MIRc SINE MIR 83 221 -47 3 1627 6571 129 48 3 chr1 136689498 136690546 -60504886 + Lx LINE L1 5584 6648 -6 3 1627 978 73 7 0 chr1 136690947 136691083 -60504349 - B1_Mus2 SINE Alu -1 146 10 3 1627 384 132 0 0 chr1 136691083 136691166 -60504266 + (A)n Simple_repeat Simple_repeat 1 83 0 3 1627 180 0 0 0 chr1 136691276 136691296 -60504136 + (CTTTA)n Simple_repeat Simple_repeat 2 21 0 3 1627 873 76 0 0 chr1 136691483 136691601 -60503831 + (GGAAA)n Simple_repeat Simple_repeat 3 120 0 3 1627 228 227 143 26 chr1 136693251 136693328 -60502104 + B1F1 SINE Alu 13 98 -51 3 1627 186 43 0 0 chr1 136694340 136694363 -60501069 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1627 369 0 0 0 chr1 136694457 136694498 -60500934 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1627 290 215 93 41 chr1 136694722 136694819 -60500613 - PB1 SINE Alu -9 118 17 3 1627 728 213 132 5 chr1 136695378 136695567 -60499865 - B3 SINE B2 0 216 4 3 1627 1208 55 37 0 chr1 136695738 136696412 -60499020 + (CAGG)n Simple_repeat Simple_repeat 1 699 0 3 1627 185 65 32 0 chr1 136696438 136696469 -60498963 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1627 572 248 78 0 chr1 136696490 136696631 -60498801 - RSINE1 SINE B4 -10 155 4 3 1627 740 221 0 0 chr1 136699147 136699292 -60496140 + B1F1 SINE Alu 2 146 -3 3 1627 221 214 0 73 chr1 136699295 136699391 -60496041 + A-rich Low_complexity Low_complexity 2 90 0 3 1627 429 283 19 65 chr1 136701570 136701725 -60493707 - RSINE1 SINE B4 -16 149 2 3 1627 585 135 269 0 chr1 136701937 136702041 -60493391 - B1_Mus1 SINE Alu -14 134 3 3 1627 751 290 155 27 chr1 136702839 136703031 -60492401 + L1MC4 LINE L1 6686 6935 -1107 3 1627 234 0 0 0 chr1 136703031 136703057 -60492375 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1627 751 290 155 27 chr1 136703057 136703495 -60491937 + L1MC4 LINE L1 6936 7396 -646 3 1627 364 269 118 41 chr1 136703982 136704203 -60491229 + MER112 DNA MER1_type 15 252 -9 3 1627 455 170 95 0 chr1 136704560 136704666 -60490766 - PB1D9 SINE Alu -4 116 2 3 1627 3796 94 2 0 chr1 136704947 136705458 -60489974 - L1_Mm LINE L1 -303 5580 5069 3 1627 669 88 24 16 chr1 136705458 136705585 -60489847 + L1_Mus3 LINE L1 6510 6637 -1 3 1627 324 324 73 94 chr1 136705602 136705847 -60489585 + B4 SINE B4 2 241 -51 3 1627 221 216 0 0 chr1 136705853 136705890 -60489542 + (CGTG)n Simple_repeat Simple_repeat 2 38 0 3 1627 486 0 0 0 chr1 136705894 136705948 -60489484 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1627 517 205 16 0 chr1 136706638 136706765 -60488667 + (TA)n Simple_repeat Simple_repeat 1 129 0 3 1627 343 300 236 0 chr1 136706767 136706907 -60488525 - B3 SINE B2 -38 178 6 3 1627 259 269 15 0 chr1 136706994 136707061 -60488371 - ID2 SINE ID -10 73 6 3 1627 1021 208 5 11 chr1 136707252 136707442 -60487990 - B3 SINE B2 -19 197 9 3 1627 258 81 0 0 chr1 136707945 136707982 -60487450 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 203 626 303 49 39 chr1 136708029 136708314 -60487118 - B4A SINE B4 -4 288 1 3 1628 599 286 0 60 chr1 136708510 136708692 -60486740 - B4A SINE B4 -120 172 2 3 1628 286 227 121 0 chr1 136709000 136709066 -60486366 - ID_B1 SINE B4 -3 221 148 3 1628 234 79 45 60 chr1 136709629 136709696 -60485736 + T-rich Low_complexity Low_complexity 3 68 0 3 1628 1090 101 14 0 chr1 136709702 136709850 -60485582 - B1_Mur4 SINE Alu 0 150 1 3 1628 23 0 0 0 chr1 136709881 136709904 -60485528 + AT_rich Low_complexity Low_complexity 1 23 0 3 1628 214 290 43 0 chr1 136709954 136710023 -60485409 + RSINE1 SINE B4 20 91 -74 3 1628 472 113 0 0 chr1 136710288 136710359 -60485073 - ORR1C2 LTR MaLR 0 384 314 3 1628 717 76 19 0 chr1 136710362 136710467 -60484965 - B1_Mur3 SINE Alu 0 149 43 3 1628 1092 183 130 67 chr1 136710469 136710768 -60484664 - ORR1C2 LTR MaLR -64 320 3 3 1628 232 91 0 43 chr1 136711439 136711485 -60483947 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 3 1628 248 330 64 2 chr1 136711804 136711895 -60483537 + PB1D10 SINE Alu 13 113 -36 3 1628 405 54 0 0 chr1 136711913 136711969 -60483463 + (CAG)n Simple_repeat Simple_repeat 1 56 0 3 1628 180 0 0 0 chr1 136712011 136712031 -60483401 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1628 279 190 0 0 chr1 136712771 136712829 -60482603 + (CATA)n Simple_repeat Simple_repeat 4 61 0 3 1628 860 251 37 0 chr1 136713821 136714012 -60481420 - B3 SINE B2 -10 206 9 3 1628 216 0 0 0 chr1 136714391 136714415 -60481017 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 1628 687 285 51 44 chr1 136714595 136714870 -60480562 + B4 SINE B4 2 278 -14 3 1628 390 239 0 11 chr1 136715111 136715200 -60480232 + PB1D10 SINE Alu 4 91 -26 3 1628 276 189 180 100 chr1 136715302 136715402 -60480030 - PB1D9 SINE Alu 0 120 13 4 1628 235 292 26 78 chr1 136715345 136715460 -60479972 - MT2B LTR ERVL -376 225 117 4 1628 265 114 0 22 chr1 136715542 136715587 -60479845 - L1M5 LINE L1 -367 5757 5714 4 1628 522 242 146 43 chr1 136715957 136716241 -60479191 - B4 SINE B4 -30 262 2 4 1628 237 33 0 0 chr1 136716385 136716415 -60479017 + (CACTC)n Simple_repeat Simple_repeat 5 34 0 4 1628 1809 123 144 0 chr1 136717231 136717565 -60477867 - ORR1B1 LTR MaLR -8 386 5 4 1628 513 0 0 0 chr1 136718289 136718346 -60477086 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1628 396 326 48 28 chr1 136718348 136718493 -60476939 - RSINE1 SINE B4 -15 150 3 4 1628 1414 82 5 0 chr1 136718697 136718881 -60476551 - B2_Mm1a SINE B2 -7 186 2 4 1628 249 108 0 0 chr1 136718977 136719014 -60476418 + (CATA)n Simple_repeat Simple_repeat 3 39 0 4 1628 254 267 32 32 chr1 136721104 136721123 -60474309 + ID SINE ID 65 83 -141 4 1628 225 240 43 20 chr1 136721123 136721198 -60474234 + B1F2 SINE Alu 1 77 -218 4 1628 294 334 95 22 chr1 136721412 136721592 -60473840 - MIR SINE MIR -84 184 5 4 1628 340 250 41 10 chr1 136721779 136721876 -60473556 - RSINE1 SINE B4 -21 144 45 4 1628 830 328 162 26 chr1 136722330 136723362 -60472070 + L2a LINE L2 2205 3385 -41 4 1628 900 82 96 7 chr1 136723496 136723631 -60471801 - B1_Mus2 SINE Alu 0 147 1 4 1628 8456 68 5 2 chr1 136724307 136725470 -60469962 - L1_Mus3 LINE L1 0 6638 5477 4 1628 4408 110 9 0 chr1 136725462 136726097 -60469335 + L1_Mus3 LINE L1 4846 5486 -397 4 1628 384 298 317 56 chr1 136726574 136726874 -60468558 + MER44B DNA MER2_type 10 387 -163 4 1628 251 353 29 10 chr1 136726904 136727007 -60468425 + MER44B DNA MER2_type 445 549 -1 4 1628 1222 49 0 0 chr1 136727428 136727571 -60467861 + B1_Mus2 SINE Alu 1 143 -4 4 1628 345 299 104 47 chr1 136727833 136728026 -60467406 + L1ME2 LINE L1 5953 6156 -8 4 1628 2191 104 25 0 chr1 136728617 136728934 -60466498 + ORR1A4 LTR MaLR 5 329 0 4 1628 579 62 0 0 chr1 136729510 136729590 -60465842 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1628 231 36 0 0 chr1 136729590 136729617 -60465815 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1628 229 216 0 121 chr1 136729729 136729786 -60465646 - ID_B1 SINE B4 -9 215 166 4 1628 530 312 122 28 chr1 136729786 136730000 -60465432 + B4A SINE B4 1 234 -58 4 1628 279 79 0 0 chr1 136730131 136730169 -60465263 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1628 738 163 8 0 chr1 136731854 136731977 -60463455 - B3 SINE B2 -92 124 1 4 1628 198 0 0 0 chr1 136733296 136733318 -60462114 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1628 463 272 74 14 chr1 136733397 136733591 -60461841 + MIRb SINE MIR 3 216 -52 4 1628 453 320 48 15 chr1 136733928 136734134 -60461298 + MIR SINE MIR 31 243 -19 4 1628 255 271 63 105 chr1 136735307 136735402 -60460030 - B3A SINE B2 -4 194 104 4 1628 700 278 19 14 chr1 136735602 136735817 -60459615 - B3 SINE B2 0 216 1 4 1628 226 161 0 61 chr1 136736480 136736546 -60458886 + CT-rich Low_complexity Low_complexity 4 65 0 4 1628 628 221 0 0 chr1 136736863 136736985 -60458447 + RSINE1 SINE B4 12 133 -32 4 1628 838 263 131 36 chr1 136737004 136737593 -60457839 + L1MB3 LINE L1 5417 6133 -50 4 1628 424 167 18 18 chr1 136738284 136738394 -60457038 + CT-rich Low_complexity Low_complexity 3 112 0 4 1628 768 211 19 58 chr1 136738501 136738707 -60456725 - B3A SINE B2 0 198 1 4 1628 675 221 77 34 chr1 136738712 136738946 -60456486 - L1M3 LINE L1 -354 5824 5581 4 1628 226 252 108 88 chr1 136739463 136739611 -60455821 - L1M3 LINE L1 -1927 4213 4063 4 1628 387 255 200 57 chr1 136739858 136740103 -60455329 - B4 SINE B4 -11 281 2 4 1628 418 222 265 6 chr1 136740106 136740272 -60455160 - B4A SINE B4 -64 228 20 4 1628 693 261 156 21 chr1 136740420 136740663 -60454769 - B4A SINE B4 -16 276 1 4 1628 507 45 0 0 chr1 136741084 136741150 -60454282 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 4 1628 844 204 0 0 chr1 136741151 136741293 -60454139 - B1_Mur4 SINE Alu -5 145 4 4 1628 661 251 146 28 chr1 136742015 136742302 -60453130 - MER2 DNA MER2_type -1 344 24 4 1628 298 298 178 6 chr1 136742363 136742532 -60452900 + MER3 DNA MER1_type 12 209 0 4 1628 1335 254 59 20 chr1 136743600 136743990 -60451442 - MTD LTR MaLR -14 405 1 4 1628 486 0 0 0 chr1 136745368 136745422 -60450010 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1628 249 57 0 0 chr1 136745422 136745457 -60449975 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1628 260 246 16 0 chr1 136746207 136746268 -60449164 - ID4_ SINE ID -17 66 5 4 1628 2586 71 0 0 chr1 136746365 136746690 -60448742 + ORR1A2 LTR MaLR 1 325 -2 4 1628 2742 239 110 78 chr1 136747697 136749389 -60446043 + RMER1A Other Other 1 1030 0 4 1628 575 99 88 0 chr1 136751327 136751418 -60444014 + Lx5 LINE L1 5034 5132 -748 4 1628 456 123 622 0 chr1 136751413 136751561 -60443871 + Lx5 LINE L1 5625 5864 -1186 4 1628 611 158 22 15 chr1 136751565 136751700 -60443732 + Lx7 LINE L1 7412 7547 -149 4 1628 351 0 0 0 chr1 136751709 136751748 -60443684 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 4 1628 234 0 0 0 chr1 136751909 136751935 -60443497 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1628 31 58 0 0 chr1 136752094 136752146 -60443286 + AT_rich Low_complexity Low_complexity 1 52 0 4 1628 251 293 40 0 chr1 136752398 136752473 -60442959 + PB1D7 SINE Alu 42 119 -1 4 1628 255 221 0 29 chr1 136752480 136752499 -60442933 + A-rich Low_complexity Low_complexity 1 19 0 4 1628 443 146 142 28 chr1 136752499 136752605 -60442827 + PB1D9 SINE Alu 1 118 -2 4 1628 255 221 0 29 chr1 136752605 136752655 -60442777 + A-rich Low_complexity Low_complexity 20 68 0 4 1628 33 43 0 0 chr1 136752776 136752823 -60442609 + AT_rich Low_complexity Low_complexity 1 47 0 4 1628 248 306 57 0 chr1 136753369 136753493 -60441939 + MIRb SINE MIR 82 212 -56 4 1628 439 201 119 38 chr1 136753769 136753929 -60441503 - Tigger1 DNA MER2_type -29 2389 2217 4 1628 253 258 31 46 chr1 136753930 136753995 -60441437 + RSINE1 SINE B4 5 68 -97 4 1628 881 146 0 6 chr1 136754007 136754149 -60441283 + CT-rich Low_complexity Low_complexity 18 158 0 4 1628 1058 107 0 13 chr1 136754149 136754300 -60441132 - B1_Mur4 SINE Alu 0 150 2 4 1628 881 146 0 6 chr1 136754300 136754316 -60441116 + polypyrimidine Low_complexity Low_complexity 2 17 0 4 1628 221 241 0 18 chr1 136754357 136754412 -60441020 - B1F SINE Alu -63 86 33 4 1628 419 125 14 0 chr1 136754481 136754553 -60440879 + (TTCTC)n Simple_repeat Simple_repeat 2 74 0 4 1628 1136 55 14 0 chr1 136754566 136754712 -60440720 - B1_Mus1 SINE Alu 0 148 1 4 1628 180 0 0 0 chr1 136756149 136756169 -60439263 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1628 547 80 8 96 chr1 136756191 136756316 -60439116 + Lx2A LINE L1 6876 6989 -19 4 1628 545 204 6 0 chr1 136756388 136756550 -60438882 + (CA)n Simple_repeat Simple_repeat 1 163 0 4 1628 186 43 0 0 chr1 136756568 136756591 -60438841 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1628 492 228 0 0 chr1 136756637 136756808 -60438624 + (CA)n Simple_repeat Simple_repeat 1 171 0 4 1628 212 350 16 41 chr1 136757598 136757720 -60437712 + L2 LINE L2 2820 2938 -481 4 1628 525 219 0 0 chr1 136758409 136758505 -60436927 + RSINE1 SINE B4 38 133 -32 4 1628 795 230 173 18 chr1 136758756 136759092 -60436340 + L1MB8 LINE L1 5612 5999 -179 4 1628 448 291 56 7 chr1 136759860 136760002 -60435430 + B1F1 SINE Alu 1 149 0 4 1628 457 170 75 9 chr1 136760071 136760178 -60435254 - PB1D9 SINE Alu -1 119 6 4 1628 296 254 233 84 chr1 136760507 136760758 -60434674 - B4A SINE B4 -3 289 2 4 1628 598 272 51 23 chr1 136760930 136761107 -60434325 + B3A SINE B2 2 183 -15 4 1628 236 326 10 48 chr1 136761659 136761762 -60433670 + PB1D10 SINE Alu 1 99 -18 4 1628 225 131 28 28 chr1 136763830 136763901 -60431531 + A-rich Low_complexity Low_complexity 2 72 0 4 1628 24 32 0 0 chr1 136763988 136764019 -60431413 + AT_rich Low_complexity Low_complexity 1 31 0 4 1628 336 254 196 23 chr1 136764041 136764174 -60431258 - RSINE1 SINE B4 -2 163 8 4 1628 531 215 0 0 chr1 136764421 136764542 -60430890 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1628 369 378 62 62 chr1 136764825 136765130 -60430302 + MLT1J LTR MaLR 201 505 -7 4 1628 251 243 157 0 chr1 136765215 136765285 -60430147 - ID4_ SINE ID -2 81 1 4 1628 458 281 40 15 chr1 136765682 136765884 -60429548 + B3 SINE B2 3 209 -7 4 1628 219 36 0 0 chr1 136765884 136765912 -60429520 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1628 367 284 110 15 chr1 136765913 136766049 -60429383 + B1_Mur1 SINE Alu 1 149 0 4 1628 23 78 0 0 chr1 136766294 136766345 -60429087 + AT_rich Low_complexity Low_complexity 1 51 0 4 1628 842 220 50 5 chr1 136768138 136768339 -60427093 + ID_B1 SINE B4 2 211 -13 4 1628 247 278 14 14 chr1 136769970 136770043 -60425389 - MER5A1 DNA MER1_type 0 166 94 4 1628 193 303 85 66 chr1 136770183 136770289 -60425143 - L2a LINE L2 -9 3417 3310 4 1628 282 311 67 10 chr1 136770689 136770793 -60424639 + PB1D9 SINE Alu 2 111 -9 4 1628 223 254 16 91 chr1 136773099 136773220 -60422212 + MIR SINE MIR 96 207 -55 4 1628 2005 234 101 19 chr1 136773250 136773387 -60422045 - Lx6 LINE L1 -6 7454 7316 4 1628 203 0 0 36 chr1 136773387 136773415 -60422017 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1628 2005 234 101 19 chr1 136773415 136773801 -60421631 - Lx6 LINE L1 -145 7315 6888 4 1628 235 314 0 0 chr1 136774057 136774108 -60421324 + PB1D9 SINE Alu 1 51 -69 4 1628 713 139 41 0 chr1 136774113 136774235 -60421197 + B3 SINE B2 1 127 -89 5 1628 21 0 0 0 chr1 136774245 136774266 -60421166 + AT_rich Low_complexity Low_complexity 1 21 0 5 1628 281 236 63 63 chr1 136774282 136774377 -60421055 + ID_B1 SINE B4 122 216 -8 5 1628 251 337 0 0 chr1 136774406 136774495 -60420937 + BC1_Mm scRNA scRNA 8 96 -56 5 1628 254 354 0 12 chr1 136774542 136774622 -60420810 + ID4_ SINE ID 3 81 -2 5 1628 618 265 139 41 chr1 136775772 136776111 -60419321 + MLT1A LTR MaLR 1 372 -2 5 1628 1215 41 0 7 chr1 136776797 136776945 -60418487 - B1_Mus2 SINE Alu 0 147 1 5 1628 186 103 0 0 chr1 136777050 136777079 -60418353 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 5 1628 332 347 0 8 chr1 136777632 136777757 -60417675 + MLT1H2 LTR MaLR 6 129 -360 5 1628 919 249 14 0 chr1 136778036 136778245 -60417187 - ID_B1 SINE B4 -11 213 2 5 1628 246 258 16 0 chr1 136778249 136778311 -60417121 + MLT1G1 LTR MaLR 517 579 0 5 1628 834 214 117 20 chr1 136779117 136779313 -60416119 - B3 SINE B2 -1 215 1 5 1628 191 331 124 17 chr1 136779399 136779577 -60415855 + MIRc SINE MIR 72 268 0 5 1628 481 227 55 96 chr1 136779859 136780113 -60415319 - MTE2b LTR MaLR 0 379 19 5 1628 352 227 41 10 chr1 136780431 136780529 -60414903 + MTEa LTR MaLR 279 379 0 5 1628 385 169 14 0 chr1 136780929 136781000 -60414432 + MTC LTR MaLR 9 80 -339 5 1628 891 148 7 32 chr1 136781000 136781154 -60414278 + B1_Mur4 SINE Alu 1 150 0 5 1628 441 185 0 52 chr1 136781154 136781308 -60414124 + GA-rich Low_complexity Low_complexity 2 147 0 5 1628 478 154 8 111 chr1 136781308 136781425 -60414007 + MTC LTR MaLR 67 171 -250 5 1628 416 209 11 11 chr1 136781424 136781516 -60413916 + MTC LTR MaLR 299 390 -31 5 1628 35 41 0 0 chr1 136781754 136781803 -60413629 + AT_rich Low_complexity Low_complexity 1 49 0 5 1628 999 192 44 5 chr1 136781803 136782007 -60413425 + B3 SINE B2 1 212 -4 5 1628 315 238 89 204 chr1 136782287 136782556 -60412876 + MER2 DNA MER2_type 108 345 0 5 1628 273 29 0 0 chr1 136783769 136783803 -60411629 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1628 262 284 0 0 chr1 136784026 136784107 -60411325 + A-rich Low_complexity Low_complexity 1 81 0 5 1628 1074 59 0 29 chr1 136784308 136784447 -60410985 + B1_Mus2 SINE Alu 1 135 -12 5 1628 930 50 36 0 chr1 136784447 136784586 -60410846 + (GAAAA)n Simple_repeat Simple_repeat 1 144 0 5 1628 556 66 0 0 chr1 136784670 136784746 -60410686 + RLTR16 LTR ERVK 1 76 -429 5 1628 26 64 0 0 chr1 136785171 136785218 -60410214 + AT_rich Low_complexity Low_complexity 1 47 0 5 1628 1565 159 78 21 chr1 136785223 136785557 -60409875 + RLTR16 LTR ERVK 60 412 -93 5 1628 471 88 33 0 chr1 136785566 136785657 -60409775 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1628 383 204 11 22 chr1 136785659 136785749 -60409683 + RLTR16 LTR ERVK 403 491 -14 5 1628 270 277 27 12 chr1 136785889 136785986 -60409446 + PB1D10 SINE Alu 1 101 -19 5 1628 889 115 35 21 chr1 136786773 136786915 -60408517 + B1_Mus1 SINE Alu 5 148 0 5 1628 882 179 0 0 chr1 136786915 136787083 -60408349 + GA-rich Low_complexity Low_complexity 1 168 0 5 1628 234 0 0 0 chr1 136787083 136787109 -60408323 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 5 1628 581 0 14 0 chr1 136787581 136787650 -60407782 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1628 453 66 0 0 chr1 136789276 136789337 -60406095 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1628 611 248 55 0 chr1 136789349 136789494 -60405938 - RSINE1 SINE B4 -1 164 12 5 1628 315 0 0 0 chr1 136789494 136789529 -60405903 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1628 180 331 120 10 chr1 136790391 136790583 -60404849 - MIRb SINE MIR -48 220 8 5 1628 1020 132 42 42 chr1 136791196 136791386 -60404046 + B2_Mm2 SINE B2 1 190 -5 5 1628 230 284 47 47 chr1 136791537 136791644 -60403788 - MER58B DNA MER1_type -18 323 217 5 1628 481 266 43 7 chr1 136792058 136792198 -60403234 + B1F SINE Alu 1 145 -4 5 1628 193 89 44 0 chr1 136792271 136792316 -60403116 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1628 1131 71 0 0 chr1 136792339 136792480 -60402952 - B1_Mus1 SINE Alu -6 142 2 5 1628 499 248 32 0 chr1 136793318 136793443 -60401989 + B1F2 SINE Alu 5 133 -16 5 1628 1221 54 0 0 chr1 136794009 136794157 -60401275 + B1_Mus1 SINE Alu 1 148 0 5 1628 377 326 63 7 chr1 136794181 136794323 -60401109 + RSINE1 SINE B4 11 160 -5 5 1628 1093 73 15 0 chr1 136794759 136794896 -60400536 + B1_Mm SINE Alu 1 139 -8 5 1628 234 0 0 0 chr1 136794896 136794922 -60400510 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1628 181 189 0 26 chr1 136794940 136794978 -60400454 + MIR SINE MIR 217 253 -9 5 1628 2198 154 24 3 chr1 136795004 136795374 -60400058 + ORR1C1 LTR MaLR 1 378 0 5 1628 362 349 103 0 chr1 136796365 136796511 -60398921 - RSINE1 SINE B4 -3 162 2 5 1628 504 86 0 0 chr1 136796703 136796773 -60398659 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1628 363 307 53 0 chr1 136796971 136797085 -60398347 + B1F1 SINE Alu 18 137 -12 5 1628 647 286 23 41 chr1 136797102 136797321 -60398111 - B3 SINE B2 -1 215 1 5 1628 201 218 18 18 chr1 136798614 136798670 -60396762 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 5 1628 280 188 145 0 chr1 136799101 136799170 -60396262 - L2a LINE L2 0 3426 3348 5 1628 315 71 0 0 chr1 136799462 136799504 -60395928 + (TTG)n Simple_repeat Simple_repeat 1 42 0 5 1628 220 344 108 0 chr1 136799563 136799656 -60395776 + PB1D10 SINE Alu 3 105 -12 5 1628 219 69 0 0 chr1 136799656 136799685 -60395747 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 5 1628 839 233 17 6 chr1 136799692 136799873 -60395559 + B4 SINE B4 58 240 -52 5 1628 255 61 0 0 chr1 136799912 136799945 -60395487 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1628 802 19 19 0 chr1 136799945 136800048 -60395384 + (GA)n Simple_repeat Simple_repeat 2 107 0 5 1628 358 245 67 109 chr1 136800082 136800247 -60395185 + ID_B1 SINE B4 66 223 -1 5 1628 585 164 56 69 chr1 136800108 136800252 -60395180 + B1_Mm SINE Alu 6 147 0 5 1628 1500 110 0 0 chr1 136800370 136800589 -60394843 - Lx2 LINE L1 -1167 4710 4492 5 1628 237 57 86 0 chr1 136800590 136800625 -60394807 + Lx2 LINE L1 4704 4741 -1136 5 1628 2858 44 12 0 chr1 136800622 136800963 -60394469 + L1Md_F2 LINE L1 5240 5584 -299 5 1628 8102 40 8 32 chr1 136800963 136801027 -60394405 + L1Md_F2 LINE L1 5594 5657 -925 5 1628 1261 41 0 0 chr1 136801027 136801174 -60394258 + B1_Mus2 SINE Alu 1 147 0 5 1628 8102 40 8 32 chr1 136801174 136802123 -60393309 + L1Md_F2 LINE L1 5658 6582 0 5 1628 7163 112 31 3 chr1 136802123 136803623 -60391809 + Lx2 LINE L1 5100 6645 -352 5 1628 1130 116 126 5 chr1 136803621 136803820 -60391612 + Lx2 LINE L1 6775 6997 0 5 1628 1812 273 115 76 chr1 136803843 136804043 -60391389 + Charlie1a DNA MER1_type 64 265 -1190 5 1628 1265 137 20 20 chr1 136804043 136804244 -60391188 + B3 SINE B2 1 201 -15 5 1628 1812 273 115 76 chr1 136804244 136804630 -60390802 + Charlie1a DNA MER1_type 266 733 -722 5 1628 1104 153 153 0 chr1 136804630 136804826 -60390606 - URR1A DNA MER1_type 0 226 1 5 1628 1812 273 115 76 chr1 136804826 136804997 -60390435 + Charlie1a DNA MER1_type 734 894 -561 5 1628 723 155 17 0 chr1 136804997 136805113 -60390319 - PB1D9 SINE Alu 0 120 3 5 1628 1812 273 115 76 chr1 136805113 136805203 -60390229 + Charlie1a DNA MER1_type 895 971 -484 5 1628 641 258 43 76 chr1 136805203 136805413 -60390019 + ID_B1 SINE B4 4 206 -18 5 1628 1812 273 115 76 chr1 136805413 136805600 -60389832 + Charlie1a DNA MER1_type 972 1141 -314 5 1628 183 100 0 0 chr1 136805600 136805630 -60389802 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 1628 483 244 106 7 chr1 136807073 136807293 -60388139 + L1M4 LINE L1 5200 5438 -742 5 1628 482 222 23 23 chr1 136807296 136807425 -60388007 + B1_Mus2 SINE Alu 18 146 -1 5 1628 378 252 93 99 chr1 136807440 136807753 -60387679 + L1M4 LINE L1 5484 5794 -377 5 1628 459 252 8 16 chr1 136807765 136807890 -60387542 + MLT1C LTR MaLR 337 460 -7 5 1628 22 0 0 0 chr1 136808026 136808048 -60387384 + AT_rich Low_complexity Low_complexity 1 22 0 5 1628 560 238 48 0 chr1 136808142 136808268 -60387164 - ID_B1 SINE B4 -11 213 82 5 1628 430 266 41 14 chr1 136808793 136808938 -60386494 + B1F1 SINE Alu 1 149 0 5 1628 273 274 48 0 chr1 136809157 136809241 -60386191 + RSINE1 SINE B4 78 165 0 5 1628 542 271 33 0 chr1 136809625 136809776 -60385656 + RSINE1 SINE B4 2 157 -8 5 1628 341 266 69 60 chr1 136812463 136812579 -60382853 - B1F1 SINE Alu 0 117 1 5 1628 926 158 7 0 chr1 136812595 136812741 -60382691 - B1_Mus2 SINE Alu 0 147 1 5 1628 331 319 43 0 chr1 136812780 136812874 -60382558 + PB1D10 SINE Alu 6 103 -14 5 1628 3215 58 12 10 chr1 136812882 136813281 -60382151 - MTB LTR MaLR 0 400 1 5 1628 400 291 38 45 chr1 136813399 136813532 -60381900 + RSINE1 SINE B4 3 134 -31 5 1628 940 249 13 99 chr1 136813588 136813900 -60381532 + B4A SINE B4 8 292 0 5 1628 874 142 43 0 chr1 136813990 136814131 -60381301 + B1_Mus2 SINE Alu 1 147 0 5 1628 1149 124 68 19 chr1 136814165 136814371 -60381061 + B3 SINE B2 1 216 0 5 1628 1082 95 0 7 chr1 136814968 136815116 -60380316 - B1_Mus1 SINE Alu 0 148 2 5 1628 222 118 0 0 chr1 136815235 136815269 -60380163 + (GAA)n Simple_repeat Simple_repeat 2 35 0 5 1628 731 123 0 8 chr1 136816185 136816308 -60379124 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 5 1628 330 248 143 0 chr1 136816373 136816478 -60378954 + PB1 SINE Alu 1 120 -7 5 1628 814 71 0 0 chr1 136816486 136816598 -60378834 + B1_Mm SINE Alu 36 147 0 5 1628 249 57 0 0 chr1 136816598 136816633 -60378799 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1628 281 202 117 0 chr1 136816638 136816732 -60378700 - MER58B DNA MER1_type -106 235 131 5 1628 342 0 0 0 chr1 136817616 136817654 -60377778 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1628 233 28 83 0 chr1 136817796 136817832 -60377600 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 1628 1198 54 7 0 chr1 136817836 136817983 -60377449 - B1_Mus1 SINE Alu 0 148 1 5 1628 653 85 0 0 chr1 136818951 136819045 -60376387 + B1_Mus2 SINE Alu 41 134 -13 5 1628 243 0 0 0 chr1 136819048 136819075 -60376357 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1628 239 120 60 0 chr1 136819089 136819139 -60376293 + B3 SINE B2 1 53 -163 6 1628 241 254 34 0 chr1 136819403 136819462 -60375970 - L1MB8 LINE L1 -9 6169 6109 6 1628 845 243 39 19 chr1 136819495 136819701 -60375731 - B3 SINE B2 -6 210 1 6 1628 749 262 19 0 chr1 136819858 136820018 -60375414 - RSINE1 SINE B4 0 165 3 6 1628 244 23 0 85 chr1 136820165 136820212 -60375220 + (CCCCCA)n Simple_repeat Simple_repeat 2 44 0 6 1628 999 240 143 6 chr1 136820262 136820577 -60374855 + MTE2b LTR MaLR 11 368 -11 6 1628 1052 251 108 24 chr1 136820580 136820953 -60374479 - MTD LTR MaLR -23 396 6 6 1628 971 237 128 165 chr1 136820980 136821193 -60374239 - L1M4 LINE L1 -743 5403 5197 6 1628 1022 230 10 0 chr1 136821193 136821393 -60374039 - B3 SINE B2 -13 203 2 6 1628 971 237 128 165 chr1 136821393 136821692 -60373740 - L1M4 LINE L1 -950 5196 4957 6 1628 563 267 50 74 chr1 136821692 136821894 -60373538 - B3A SINE B2 -1 197 1 6 1628 971 237 128 165 chr1 136821894 136822163 -60373269 - L1M4 LINE L1 -1190 4956 4650 6 1628 1421 39 60 16 chr1 136822451 136822634 -60372798 + B2_Mm1a SINE B2 2 192 -1 6 1628 280 246 14 14 chr1 136823202 136823272 -60372160 + RSINE1 SINE B4 92 161 -4 6 1628 721 255 137 13 chr1 136823467 136823781 -60371651 + ORR1E LTR MaLR 1 353 -6 6 1628 311 206 73 0 chr1 136824321 136824389 -60371043 - PB1D10 SINE Alu -5 112 40 6 1628 221 276 23 0 chr1 136824458 136824545 -60370887 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1628 1383 80 21 0 chr1 136824621 136824808 -60370624 - B2_Mm2 SINE B2 -4 191 1 6 1628 932 242 5 41 chr1 136824925 136825145 -60370287 - B3 SINE B2 -4 212 1 6 1628 391 177 0 60 chr1 136825775 136825859 -60369573 - MTD LTR MaLR -55 364 286 6 1628 831 201 23 17 chr1 136825874 136826051 -60369381 - MTD LTR MaLR -241 178 1 6 1628 244 304 24 97 chr1 136826361 136826384 -60369048 - PB1D9 SINE Alu -5 115 5 6 1628 382 278 0 0 chr1 136826384 136826481 -60368951 - ID_B1 SINE B4 -42 182 86 6 1628 2513 287 78 53 chr1 136826545 136826881 -60368551 + RMER1C Other Other 390 872 -470 6 1628 2591 113 3 0 chr1 136826881 136827245 -60368187 + RLTR8 LTR ERVK 1 365 0 6 1628 2513 274 74 64 chr1 136827245 136828022 -60367410 + RMER1C Other Other 563 1342 0 6 1628 269 227 0 39 chr1 136828029 136828107 -60367325 + MTD LTR MaLR 345 419 0 6 1628 417 282 99 0 chr1 136829526 136829668 -60365764 + RSINE1 SINE B4 3 158 -7 6 1628 278 212 90 15 chr1 136830582 136830649 -60364783 + ID4_ SINE ID 2 73 -10 6 1628 333 0 0 0 chr1 136830997 136831034 -60364398 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 6 1628 470 317 92 26 chr1 136831044 136831271 -60364161 - MIR SINE MIR -19 243 2 6 1628 757 244 6 11 chr1 136831402 136831580 -60363852 + B3A SINE B2 4 180 -18 6 1628 813 179 181 19 chr1 136831586 136831802 -60363630 + MTD LTR MaLR 130 380 -39 6 1628 252 0 0 0 chr1 136832595 136832623 -60362809 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1628 947 76 46 0 chr1 136832623 136832754 -60362678 - B1_Mus1 SINE Alu -11 137 1 6 1628 225 103 0 0 chr1 136832779 136832802 -60362630 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1628 1026 83 0 65 chr1 136832802 136832956 -60362476 - B1_Mm SINE Alu 0 147 4 6 1628 225 103 0 0 chr1 136832956 136832971 -60362461 + (T)n Simple_repeat Simple_repeat 1 15 0 6 1628 568 235 15 36 chr1 136833416 136833553 -60361879 + B1_Mur1 SINE Alu 15 148 -1 6 1628 212 333 12 0 chr1 136833744 136833828 -60361604 + B1_Mus1 SINE Alu 27 111 -37 6 1628 489 238 21 119 chr1 136833912 136834020 -60361412 + L1M4 LINE L1 4900 5010 -1136 6 1628 1578 62 0 15 chr1 136834020 136834216 -60361216 + B2_Mm1t SINE B2 1 193 0 6 1628 489 238 21 119 chr1 136834216 136834306 -60361126 + L1M4 LINE L1 5011 5083 -1063 6 1628 885 204 32 51 chr1 136834306 136834523 -60360909 - B3 SINE B2 0 216 4 6 1628 489 238 21 119 chr1 136834523 136834566 -60360866 + L1M4 LINE L1 5084 5118 -1028 6 1628 270 270 32 0 chr1 136835100 136835163 -60360269 + B3A SINE B2 118 182 -16 6 1628 609 217 13 47 chr1 136835308 136835458 -60359974 + B1F SINE Alu 1 145 -4 6 1628 332 259 119 17 chr1 136835674 136835792 -60359640 + L1MC4a LINE L1 7738 7867 -15 6 1628 954 138 5 14 chr1 136836004 136836225 -60359207 + (CA)n Simple_repeat Simple_repeat 1 218 0 6 1628 703 266 16 26 chr1 136836228 136836417 -60359015 + B4 SINE B4 102 288 -4 6 1628 731 72 0 9 chr1 136836595 136836707 -60358725 + BC1_Mm scRNA scRNA 1 111 -41 6 1628 474 258 7 52 chr1 136836717 136836852 -60358580 + ID_B1 SINE B4 80 208 -16 6 1628 442 316 11 28 chr1 136836875 136837054 -60358378 - MTEb-int LTR MaLR -435 1145 970 6 1628 591 335 132 78 chr1 136837363 136838143 -60357289 - MTEb-int LTR MaLR -615 965 144 6 1628 495 276 53 16 chr1 136838143 136838316 -60357116 + B3A SINE B2 4 185 -10 6 1628 472 229 78 14 chr1 136838331 136838473 -60356959 - MTEb-int LTR MaLR -1429 151 1 6 1628 324 292 66 26 chr1 136838481 136838638 -60356794 - MTEb LTR MaLR -14 405 243 6 1628 398 204 93 0 chr1 136838662 136838770 -60356662 - PB1D9 SINE Alu -2 118 1 6 1628 678 175 14 20 chr1 136838969 136839115 -60356317 + B2_Mm2 SINE B2 27 171 -24 6 203 401 138 338 0 chr1 136839116 136839196 -60356236 - MurERV4-int LTR ERVK -4366 894 788 6 1629 682 238 55 30 chr1 136839651 136839850 -60355582 + B3 SINE B2 7 210 -6 6 1629 314 230 52 5 chr1 136839859 136839943 -60355489 + B1F1 SINE Alu 2 127 -22 6 1629 318 26 0 0 chr1 136840220 136840259 -60355173 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1629 1199 48 0 0 chr1 136840269 136840416 -60355016 - B1_Mus2 SINE Alu 0 147 1 6 1629 611 267 0 57 chr1 136840598 136840757 -60354675 - RSINE1 SINE B4 -15 150 1 6 1629 470 264 46 46 chr1 136840976 136841171 -60354261 + Lx8 LINE L1 6159 6353 -1120 6 1629 257 203 14 42 chr1 136841263 136841335 -60354097 - ID4 SINE ID -13 70 1 6 1629 1735 263 73 34 chr1 136841405 136841968 -60353464 + Lx8 LINE L1 6645 7229 -244 6 1629 280 317 140 32 chr1 136841979 136842165 -60353267 + Lx8 LINE L1 7264 7469 -4 6 1629 545 235 29 22 chr1 136842254 136842393 -60353039 + B1F SINE Alu 10 149 0 6 1629 231 319 42 0 chr1 136842408 136842480 -60352952 + ID4 SINE ID 2 76 -7 6 1629 227 261 0 0 chr1 136842535 136842581 -60352851 + PB1D10 SINE Alu 12 57 -60 6 1629 202 239 0 0 chr1 136842615 136842661 -60352771 + A-rich Low_complexity Low_complexity 1 46 0 6 1629 271 268 0 0 chr1 136842732 136842788 -60352644 - RSINE1 SINE B4 -26 139 84 6 1629 999 195 30 25 chr1 136842857 136843057 -60352375 + B3 SINE B2 2 202 -14 6 1629 568 223 7 7 chr1 136843100 136843240 -60352192 + B1F SINE Alu 2 141 -8 6 1629 280 309 113 0 chr1 136843366 136843463 -60351969 + PB1D10 SINE Alu 4 111 -6 6 1629 336 206 253 32 chr1 136843460 136843555 -60351877 + B1F2 SINE Alu 5 120 0 6 1629 362 180 33 22 chr1 136843593 136843684 -60351748 + PB1 SINE Alu 34 125 -2 6 1629 970 220 34 0 chr1 136844531 136844740 -60350692 - B3 SINE B2 0 216 1 6 1629 385 263 161 0 chr1 136845074 136845192 -60350240 - RSINE1 SINE B4 -21 144 8 6 1629 314 202 38 12 chr1 136845451 136845531 -60349901 + PB1D10 SINE Alu 36 117 0 6 1629 232 247 156 0 chr1 136845626 136845703 -60349729 + L1ME1 LINE L1 6023 6111 -68 6 1629 228 268 13 90 chr1 136845746 136845824 -60349608 + MT2B2 LTR ERVL 167 238 -346 6 1629 370 286 0 42 chr1 136845754 136845849 -60349583 + PB1D10 SINE Alu 11 101 -16 6 1629 1340 4 0 29 chr1 136845883 136846122 -60349310 + (CA)n Simple_repeat Simple_repeat 1 231 0 6 1629 700 182 0 74 chr1 136846162 136846310 -60349122 + B1_Mur4 SINE Alu 14 150 0 6 1629 629 202 18 0 chr1 136846337 136846451 -60348981 + RSINE1 SINE B4 12 127 -38 6 1629 298 271 41 41 chr1 136846464 136846587 -60348845 + GA-rich Low_complexity Low_complexity 4 126 0 6 1629 285 268 88 9 chr1 136847200 136847313 -60348119 + B1F SINE Alu 1 122 -27 6 1629 607 234 41 181 chr1 136847633 136847751 -60347681 + L1MA4 LINE L1 5602 5717 -130 6 1629 563 268 12 25 chr1 136847751 136847912 -60347520 + RSINE1 SINE B4 5 163 -2 6 1629 607 234 41 181 chr1 136847912 136847926 -60347506 + L1MA4 LINE L1 5718 5718 -129 6 1629 853 164 251 0 chr1 136847926 136848097 -60347335 - B3 SINE B2 -2 214 1 6 1629 607 234 41 181 chr1 136848097 136848127 -60347305 + L1MA4 LINE L1 5718 5721 -126 6 1629 1538 183 26 163 chr1 136848127 136848557 -60346875 + ORR1D1 LTR MaLR 3 373 -1 6 1629 607 243 51 149 chr1 136848557 136848686 -60346746 + L1MA4 LINE L1 5722 5926 -374 6 1629 22 0 0 0 chr1 136848966 136848988 -60346444 + AT_rich Low_complexity Low_complexity 1 22 0 6 1629 542 190 0 10 chr1 136848988 136849089 -60346343 + B3A SINE B2 2 101 -97 6 1629 289 253 37 37 chr1 136849072 136849154 -60346278 + B1F SINE Alu 68 149 0 6 1629 279 137 19 19 chr1 136849268 136849320 -60346112 - ORR1C2 LTR MaLR 0 384 333 6 1629 395 296 13 58 chr1 136849609 136849646 -60345786 + RSINE1 SINE B4 19 53 -112 6 1629 1221 70 23 0 chr1 136849646 136849905 -60345527 + (CCTG)n Simple_repeat Simple_repeat 1 264 0 6 1629 395 296 13 58 chr1 136849905 136850020 -60345412 + RSINE1 SINE B4 54 164 -1 6 1629 186 364 22 36 chr1 136850351 136850488 -60344944 + MIRc SINE MIR 114 248 -20 6 1629 719 188 20 46 chr1 136850694 136850845 -60344587 - B1_Mur4 SINE Alu -2 148 2 6 1629 478 212 378 0 chr1 136850916 136851067 -60344365 + ID_B1 SINE B4 2 209 -15 6 1629 321 250 7 14 chr1 136851081 136851223 -60344209 + A-rich Low_complexity Low_complexity 2 142 0 6 1629 411 224 168 0 chr1 136853230 136853337 -60342095 + B1F SINE Alu 11 135 -14 6 1629 284 259 12 0 chr1 136853375 136853456 -60341976 + ID_B1 SINE B4 143 224 0 6 1629 506 138 0 0 chr1 136853650 136853730 -60341702 + B2_Mm2 SINE B2 3 82 -113 6 1629 322 256 0 0 chr1 136853780 136853858 -60341574 - ID_B1 SINE B4 0 224 147 6 1629 686 61 61 0 chr1 136853855 136853954 -60341478 + B2_Mm1t SINE B2 74 178 -15 6 1629 324 0 0 0 chr1 136853954 136853990 -60341442 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1629 273 202 233 23 chr1 136854245 136854331 -60341101 - ID_B1 SINE B4 -1 223 120 6 1629 669 110 0 0 chr1 136854358 136854458 -60340974 + (TC)n Simple_repeat Simple_repeat 1 100 0 6 1629 1338 102 0 5 chr1 136854714 136854901 -60340531 + B2_Mm2 SINE B2 2 187 -8 7 1629 307 294 47 0 chr1 136854907 136854992 -60340440 + ID_B1 SINE B4 102 190 -34 7 1629 189 0 0 0 chr1 136855988 136856009 -60339423 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1629 369 328 16 48 chr1 136856236 136856422 -60339010 - B3A SINE B2 -16 182 3 7 1629 774 274 19 54 chr1 136856516 136856775 -60338657 + B4A SINE B4 2 251 -41 7 1629 472 246 24 95 chr1 136856974 136857100 -60338332 + PB1D10 SINE Alu 1 117 0 7 1629 302 225 14 0 chr1 136857123 136857194 -60338238 + PB1D7 SINE Alu 49 120 0 7 1629 566 190 83 0 chr1 136857208 136857329 -60338103 + B1_Mur1 SINE Alu 14 144 -5 7 1629 23 33 0 0 chr1 136857334 136857364 -60338068 + AT_rich Low_complexity Low_complexity 1 30 0 7 1629 23 0 0 0 chr1 136858542 136858565 -60336867 + AT_rich Low_complexity Low_complexity 1 23 0 7 1629 381 269 37 9 chr1 136858741 136858850 -60336582 + B1F1 SINE Alu 38 149 0 7 1629 258 103 132 0 chr1 136859571 136859639 -60335793 - B1F SINE Alu 0 149 73 7 1629 783 178 161 0 chr1 136859737 136859917 -60335515 - B3 SINE B2 0 216 8 7 1629 376 264 54 9 chr1 136860091 136860202 -60335230 - RSINE1 SINE B4 -48 117 2 7 1629 957 131 0 59 chr1 136860257 136860427 -60335005 + MTC LTR MaLR 193 352 -69 7 1629 591 215 91 0 chr1 136860513 136860634 -60334798 + B1_Mus2 SINE Alu 15 146 -1 7 1629 528 184 418 7 chr1 136860726 136860879 -60334553 - B3 SINE B2 0 216 1 7 1629 394 245 49 0 chr1 136860897 136860999 -60334433 - B1F2 SINE Alu 0 149 43 7 1629 25 83 0 0 chr1 136861044 136861104 -60334328 + AT_rich Low_complexity Low_complexity 1 60 0 7 1629 30 0 0 0 chr1 136861224 136861254 -60334178 + AT_rich Low_complexity Low_complexity 1 30 0 7 1629 1263 100 6 11 chr1 136861278 136861460 -60333972 - B2_Mm2 SINE B2 -14 181 1 7 1629 225 307 40 0 chr1 136861471 136861546 -60333886 - B4 SINE B4 -207 85 8 7 1629 1011 98 21 7 chr1 136861753 136861897 -60333535 - B1_Mus2 SINE Alu 0 147 2 7 1629 1608 124 94 79 chr1 136861903 136862245 -60333187 - ORR1B1 LTR MaLR -47 347 1 7 1629 1125 254 105 26 chr1 136862248 136862599 -60332833 + MTEa LTR MaLR 1 379 0 7 1629 257 250 0 16 chr1 136862601 136862662 -60332770 - B1F SINE Alu -47 102 43 7 1629 341 295 60 30 chr1 136862659 136862792 -60332640 - ID_B1 SINE B4 -4 220 84 7 1629 312 214 0 0 chr1 136862868 136862924 -60332508 - ID4 SINE ID -27 56 1 7 1629 934 146 251 0 chr1 136863248 136863419 -60332013 - B3 SINE B2 -1 215 2 7 1629 315 235 0 124 chr1 136863534 136863631 -60331801 + PB1 SINE Alu 13 97 -30 7 1629 930 85 169 41 chr1 136864631 136864803 -60330629 - B2_Mm2 SINE B2 0 195 2 7 1629 411 283 8 58 chr1 136864830 136864950 -60330482 + PB1D7 SINE Alu 1 114 -6 7 1629 611 285 39 13 chr1 136864976 136865129 -60330303 + RSINE1 SINE B4 9 165 0 7 1629 23 33 0 0 chr1 136865130 136865160 -60330272 + AT_rich Low_complexity Low_complexity 1 30 0 7 1629 551 301 57 41 chr1 136865294 136865488 -60329944 - B3A SINE B2 0 198 2 7 1629 643 280 74 10 chr1 136865549 136865751 -60329681 - ID_B1 SINE B4 -8 216 2 7 1629 198 320 109 10 chr1 136865968 136866069 -60329363 + MIR SINE MIR 34 144 -64 7 1629 421 222 67 134 chr1 136866106 136866217 -60329215 - L1MB3 LINE L1 -7 6176 6091 7 1629 942 158 7 0 chr1 136866217 136866363 -60329069 - B1_Mus1 SINE Alu 0 148 2 7 1629 421 222 67 134 chr1 136866363 136866475 -60328957 - L1MB3 LINE L1 -93 6090 5968 7 1629 225 235 20 0 chr1 136866704 136866755 -60328677 + L1MC4a LINE L1 7602 7653 -229 7 1629 788 186 109 45 chr1 136866791 136866993 -60328439 + B3 SINE B2 2 216 0 7 1629 198 0 0 0 chr1 136866999 136867021 -60328411 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 7 1629 1114 78 0 0 chr1 136867021 136867163 -60328269 - B1_Mus2 SINE Alu -4 143 2 7 1629 1080 68 7 58 chr1 136867320 136867475 -60327957 - B1_Mus2 SINE Alu 0 147 1 7 1629 515 181 56 72 chr1 136867620 136867745 -60327687 + Lx8 LINE L1 7166 7288 -185 7 1629 351 152 226 11 chr1 136867993 136868086 -60327346 + PB1D9 SINE Alu 1 113 -7 7 1629 405 0 0 0 chr1 136868128 136868173 -60327259 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 7 1629 475 202 0 88 chr1 136868173 136868287 -60327145 + ID_B1 SINE B4 121 224 0 7 1629 464 241 71 0 chr1 136868317 136868429 -60327003 - PB1D7 SINE Alu 0 120 1 7 1629 413 227 199 68 chr1 136868811 136868972 -60326460 + Lx8 LINE L1 7149 7330 -143 7 1629 331 256 11 75 chr1 136868973 136868985 -60326447 + MT2B LTR ERVL 153 158 -443 7 1629 437 284 9 0 chr1 136868985 136869094 -60326338 + B1_Mus2 SINE Alu 2 111 -36 7 1629 311 231 101 9 chr1 136869118 136869227 -60326205 + Lx8 LINE L1 7353 7471 -2 7 1629 621 276 32 22 chr1 136869275 136869460 -60325972 + B3A SINE B2 1 187 -11 7 1629 21 36 0 0 chr1 136869475 136869503 -60325929 + AT_rich Low_complexity Low_complexity 1 28 0 7 1629 22 0 0 0 chr1 136869552 136869574 -60325858 + AT_rich Low_complexity Low_complexity 1 22 0 7 1629 230 167 84 132 chr1 136869902 136869930 -60325502 - PB1D10 SINE Alu 0 117 96 7 1629 221 0 35 0 chr1 136869930 136869959 -60325473 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1629 232 185 167 0 chr1 136869959 136870013 -60325419 - B1F SINE Alu -48 101 39 7 1629 204 67 0 0 chr1 136870020 136870050 -60325382 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1629 868 162 21 0 chr1 136870052 136870194 -60325238 - B1_Mur4 SINE Alu -4 146 2 7 1629 394 267 25 17 chr1 136871017 136871135 -60324297 - PB1D9 SINE Alu 0 120 2 7 1629 226 320 0 37 chr1 136871604 136871685 -60323747 - BC1_Mm scRNA scRNA -73 79 2 7 1629 283 253 34 31 chr1 136871710 136871808 -60323624 - B3A SINE B2 -5 211 95 7 1629 314 208 0 0 chr1 136871887 136871940 -60323492 + ID_B1 SINE B4 146 198 -26 7 1629 247 284 15 15 chr1 136871940 136871954 -60323478 + B1F SINE Alu 68 134 -15 7 1629 30 0 0 0 chr1 136871971 136872001 -60323431 + AT_rich Low_complexity Low_complexity 1 30 0 7 1629 1489 225 59 37 chr1 136872069 136872548 -60322884 + RLTR11A LTR ERVK 1 528 0 7 1629 204 264 77 44 chr1 136873629 136873720 -60321712 - MIRb SINE MIR -76 192 99 7 1629 1569 165 155 14 chr1 136873912 136874274 -60321158 + MTC LTR MaLR 1 413 -8 7 1629 235 299 153 0 chr1 136874425 136874569 -60320863 - MLT1K LTR MaLR -8 587 422 7 1629 4390 61 0 2 chr1 136874705 136875250 -60320182 + L1_Mus1 LINE L1 6024 6567 0 7 1629 203 179 0 0 chr1 136875254 136875293 -60320139 + A-rich Low_complexity Low_complexity 1 39 0 7 1629 229 269 241 23 chr1 136875294 136875427 -60320005 - MLT1K LTR MaLR -417 178 17 7 1629 699 264 6 6 chr1 136875553 136875728 -60319704 - B3 SINE B2 -41 175 1 7 1629 718 237 6 6 chr1 136875826 136875983 -60319449 + RSINE1 SINE B4 3 159 -6 7 1629 1001 85 52 0 chr1 136876028 136876181 -60319251 + B2_Mm2 SINE B2 1 161 -34 7 1629 254 119 0 0 chr1 136876309 136876351 -60319081 - ID_B1 SINE B4 -2 222 181 7 1629 2021 193 215 24 chr1 136876483 136877068 -60318364 - MTD-int LTR MaLR -556 702 6 7 1629 1102 136 69 20 chr1 136877073 136877275 -60318157 - MTD LTR MaLR -1 418 207 7 1629 426 169 0 0 chr1 136877278 136877396 -60318036 + CT-rich Low_complexity Low_complexity 1 118 0 7 1629 926 215 64 11 chr1 136877396 136877584 -60317848 - B3 SINE B2 -17 199 2 7 1629 819 166 10 126 chr1 136877598 136877787 -60317645 - MTD LTR MaLR -236 183 12 7 1629 369 0 0 0 chr1 136877787 136877828 -60317604 + (TAA)n Simple_repeat Simple_repeat 2 42 0 7 1629 819 166 10 126 chr1 136877828 136877845 -60317587 - MTD LTR MaLR -408 11 1 7 1629 22 0 0 0 chr1 136877972 136877994 -60317438 + AT_rich Low_complexity Low_complexity 1 22 0 7 1629 212 338 39 0 chr1 136878009 136878086 -60317346 + ID4_ SINE ID 2 81 -2 7 1629 554 308 111 5 chr1 136878123 136878322 -60317110 + ID_B1 SINE B4 5 224 0 7 1629 243 0 0 0 chr1 136878351 136878378 -60317054 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1629 1551 191 77 32 chr1 136879027 136879406 -60316026 - MTD LTR MaLR -1 418 23 7 1629 537 186 10 0 chr1 136880786 136880883 -60314549 - ID_B1 SINE B4 -1 223 126 7 1629 2460 95 3 3 chr1 136881258 136881585 -60313847 + ORR1A2 LTR MaLR 1 327 0 7 1629 198 91 0 0 chr1 136881597 136881630 -60313802 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1629 236 270 44 22 chr1 136882982 136883073 -60312359 + MER103 DNA DNA 72 164 -2 7 1629 215 128 0 113 chr1 136884919 136884972 -60310460 + A-rich Low_complexity Low_complexity 1 47 0 7 1629 404 254 73 0 chr1 136885364 136885474 -60309958 + PB1D7 SINE Alu 2 119 -1 7 1629 23 0 0 0 chr1 136885812 136885835 -60309597 + AT_rich Low_complexity Low_complexity 1 23 0 7 1629 216 0 0 0 chr1 136885889 136885913 -60309519 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1629 855 184 14 0 chr1 136886382 136886529 -60308903 - B1_Mur2 SINE Alu 0 149 1 7 1629 590 198 0 0 chr1 136887715 136887831 -60307601 + B1_Mur4 SINE Alu 1 116 -34 7 1629 524 254 40 0 chr1 136887882 136888008 -60307424 + ID_B1 SINE B4 84 214 -10 7 1629 325 292 22 0 chr1 136888010 136888099 -60307333 + B4A SINE B4 41 131 -161 7 1629 496 211 15 75 chr1 136888126 136888259 -60307173 + B4A SINE B4 123 247 -45 7 1629 468 0 0 0 chr1 136888286 136888338 -60307094 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1629 382 310 15 45 chr1 136889417 136889549 -60305883 - ID_B1 SINE B4 -18 206 79 7 1629 474 18 0 0 chr1 136889738 136889793 -60305639 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1629 393 22 0 0 chr1 136889793 136889838 -60305594 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1629 1207 167 61 9 chr1 136890716 136890928 -60304504 - URR1B DNA MER1_type 0 225 3 8 1629 246 274 27 14 chr1 136891175 136891249 -60304183 + ID4 SINE ID 1 75 -8 8 1629 237 329 14 0 chr1 136891272 136891345 -60304087 + CT-rich Low_complexity Low_complexity 5 78 0 8 1629 454 299 65 7 chr1 136891347 136891485 -60303947 - ID_B1 SINE B4 -2 222 77 8 1629 239 313 11 46 chr1 136891479 136891566 -60303866 - B3A SINE B2 0 198 115 8 1629 668 343 38 51 chr1 136891504 136891796 -60303636 - B4A SINE B4 0 292 5 8 1629 986 152 6 0 chr1 136891797 136891974 -60303458 + CT-rich Low_complexity Low_complexity 3 180 0 8 1629 184 255 85 0 chr1 136892879 136892926 -60302506 - L2c LINE L2 0 3387 3337 8 1629 251 319 132 9 chr1 136893262 136893376 -60302056 + MIR SINE MIR 17 144 -64 8 1629 396 0 0 0 chr1 136894578 136894622 -60300810 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1629 213 336 30 46 chr1 136896756 136896887 -60298545 - MIRb SINE MIR -114 154 26 8 1629 416 200 259 28 chr1 136898559 136898667 -60296765 - B1_Mur2 SINE Alu -16 133 1 8 1629 573 295 14 7 chr1 136898811 136898951 -60296481 - ID_B1 SINE B4 0 224 84 8 1629 362 300 27 0 chr1 136898978 136899088 -60296344 + PB1D10 SINE Alu 2 114 -3 8 1629 486 0 0 0 chr1 136900289 136900343 -60295089 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1629 333 0 0 0 chr1 136900343 136900379 -60295053 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1629 279 130 0 0 chr1 136901049 136901103 -60294329 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 8 1629 711 219 3 72 chr1 136901620 136901776 -60293656 + RSINE1 SINE B4 3 150 -15 8 1629 476 32 0 16 chr1 136901776 136901839 -60293593 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1629 711 231 6 77 chr1 136901839 136901861 -60293571 + RSINE1 SINE B4 151 165 0 8 1629 3170 60 64 16 chr1 136902831 136903254 -60292178 - L1_Mus2 LINE L1 -1 6565 6123 8 1629 1562 42 0 0 chr1 136903254 136903445 -60291987 + L1_Mus2 LINE L1 5952 6142 -424 8 1629 272 350 0 57 chr1 136903446 136903552 -60291880 - PB1D10 SINE Alu -17 100 1 8 1629 239 276 46 37 chr1 136903563 136903672 -60291760 + L1ME4a LINE L1 6013 6122 -2 8 1629 1181 68 0 0 chr1 136904115 136904263 -60291169 - B1_Mus1 SINE Alu 0 148 1 8 1629 349 290 138 0 chr1 136905475 136905613 -60289819 + L2a LINE L2 3053 3209 -217 8 1629 285 284 89 35 chr1 136905804 136905943 -60289489 + MLT1H2 LTR MaLR 70 256 -293 8 1629 348 186 151 0 chr1 136906089 136906175 -60289257 + MLT1H2 LTR MaLR 380 478 -11 8 1629 351 268 97 42 chr1 136906201 136906345 -60289087 + L2a LINE L2 3269 3420 -6 8 1629 21 36 0 0 chr1 136906371 136906399 -60289033 + AT_rich Low_complexity Low_complexity 1 28 0 8 1629 299 292 154 40 chr1 136907505 136907557 -60287875 + MLT1J1 LTR MaLR 3 54 -458 8 1629 593 294 54 44 chr1 136907557 136907760 -60287672 - MER3 DNA MER1_type 0 209 5 8 1629 364 298 126 33 chr1 136907760 136907958 -60287474 + MLT1J1 LTR MaLR 55 240 -204 8 1629 198 316 61 61 chr1 136908199 136908364 -60287068 + L2b LINE L2 2782 2946 -473 8 1629 231 385 7 20 chr1 136908376 136908522 -60286910 + L2b LINE L2 3039 3182 -193 8 1629 335 294 143 26 chr1 136908595 136908784 -60286648 - MIR SINE MIR -21 241 31 8 1629 242 355 60 65 chr1 136910596 136910813 -60284619 - L3 LINE CR1 -6 4483 4268 8 1629 232 252 194 39 chr1 136911231 136911334 -60284098 - L2 LINE L2 -1026 2393 2275 8 1629 369 319 73 6 chr1 136912075 136912239 -60283193 + MIRc SINE MIR 2 176 -92 8 1629 517 243 0 9 chr1 136912346 136912458 -60282974 + PB1D7 SINE Alu 2 112 -8 8 1629 413 323 0 30 chr1 136912516 136912650 -60282782 + RSINE1 SINE B4 3 132 -33 8 1629 360 0 0 0 chr1 136912659 136912699 -60282733 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1629 544 230 18 6 chr1 136912763 136912883 -60282549 + PB1D10 SINE Alu 5 128 -21 8 1629 921 296 49 89 chr1 136912971 136913133 -60282299 + MLT1C LTR MaLR 16 170 -297 8 1629 1112 116 66 6 chr1 136913133 136913315 -60282117 - B2_Mm2 SINE B2 0 195 3 8 1629 921 296 49 89 chr1 136913315 136913623 -60281809 + MLT1C LTR MaLR 171 466 -1 8 1629 356 313 77 11 chr1 136913806 136914001 -60281431 - MIRc SINE MIR -30 238 26 8 1629 705 24 0 0 chr1 136914767 136914850 -60280582 + (TTTTC)n Simple_repeat Simple_repeat 4 86 0 8 1629 567 218 27 9 chr1 136915275 136915386 -60280046 - PB1D10 SINE Alu 0 117 5 8 1629 811 236 6 9 chr1 136919816 136919982 -60275450 + ID_B1 SINE B4 79 244 -48 8 1629 182 37 37 0 chr1 136920107 136920134 -60275298 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 8 1629 315 0 0 0 chr1 136920183 136920218 -60275214 + (TA)n Simple_repeat Simple_repeat 1 35 0 8 1629 207 0 0 0 chr1 136920227 136920250 -60275182 + (CAA)n Simple_repeat Simple_repeat 3 25 0 8 1629 659 250 18 59 chr1 136920265 136920397 -60275035 + B3A SINE B2 36 163 -35 8 1629 450 0 0 0 chr1 136920397 136920447 -60274985 + (CATA)n Simple_repeat Simple_repeat 2 51 0 8 1629 659 250 18 59 chr1 136920447 136920484 -60274948 + B3A SINE B2 164 198 0 8 1629 362 287 83 21 chr1 136920620 136920812 -60274620 + HAL1b LINE L1 866 1069 -940 8 1629 443 261 27 9 chr1 136921423 136921535 -60273897 - PB1D7 SINE Alu 0 120 7 8 1629 1568 195 37 91 chr1 136924357 136924763 -60270669 + ORR1C2 LTR MaLR 1 384 0 8 1629 360 261 113 17 chr1 136925450 136925679 -60269753 + L1MA8 LINE L1 5675 5935 -356 8 1629 231 300 0 0 chr1 136925702 136925752 -60269680 + ID4_ SINE ID 3 52 -31 8 1629 259 221 38 19 chr1 136925760 136925886 -60269546 + (TA)n Simple_repeat Simple_repeat 1 128 0 8 1629 894 269 24 9 chr1 136926035 136926245 -60269187 + B3 SINE B2 2 214 -2 8 1629 1231 54 0 0 chr1 136926356 136926503 -60268929 - B1_Mus1 SINE Alu 0 148 2 8 1629 28 0 0 0 chr1 136926654 136926682 -60268750 + AT_rich Low_complexity Low_complexity 1 28 0 8 1629 322 299 238 15 chr1 136926835 136927035 -60268397 - MIRb SINE MIR -21 247 3 8 1629 278 286 102 86 chr1 136927177 136927215 -60268217 - B2_Mm2 SINE B2 -5 190 1 8 1629 728 185 7 94 chr1 136927215 136927364 -60268068 - RSINE1 SINE B4 -28 137 2 8 1629 535 216 48 0 chr1 136927955 136928080 -60267352 + B1F1 SINE Alu 5 135 -14 8 1629 241 268 70 0 chr1 136928109 136928180 -60267252 - MER53 DNA hAT -26 167 92 8 1629 644 283 27 43 chr1 136928257 136928445 -60266987 + B3A SINE B2 1 185 -13 8 1629 891 221 31 10 chr1 136928500 136928692 -60266740 - B3 SINE B2 -6 210 15 8 1629 575 304 45 45 chr1 136929897 136930121 -60265311 + ID_B1 SINE B4 1 224 0 8 1629 713 104 38 26 chr1 136930122 136930388 -60265044 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 8 1629 633 181 295 6 chr1 136930555 136930711 -60264721 - B3 SINE B2 -14 202 2 8 1629 182 189 27 0 chr1 136930742 136930779 -60264653 + MER5A DNA MER1_type 101 138 -51 8 1629 356 322 107 0 chr1 136931431 136931552 -60263880 + B1F SINE Alu 3 136 -13 8 1629 225 0 0 0 chr1 136931556 136931581 -60263851 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1629 228 360 35 0 chr1 136932581 136932667 -60262765 - MIRb SINE MIR -8 260 172 8 1629 212 306 83 83 chr1 136932815 136933032 -60262400 - L2a LINE L2 -266 3160 2944 8 1629 479 292 167 0 chr1 136933574 136933742 -60261690 + MER3 DNA MER1_type 10 205 -4 8 1629 609 14 0 0 chr1 136933875 136933945 -60261487 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1629 299 246 71 14 chr1 136934958 136935028 -60260404 - ID4 SINE ID -9 74 1 8 1629 390 264 0 0 chr1 136937237 136937381 -60258051 + (CA)n Simple_repeat Simple_repeat 2 145 0 8 1629 683 85 8 25 chr1 136937681 136937801 -60257631 + (TC)n Simple_repeat Simple_repeat 2 119 0 8 1629 267 103 0 25 chr1 136937867 136937907 -60257525 - B1F1 SINE Alu -102 47 9 8 1629 215 186 45 23 chr1 136937868 136937912 -60257520 - B4A SINE B4 -161 131 87 8 1629 325 369 48 28 chr1 136938101 136938352 -60257080 + L1M6 LINE L1 626 881 -5615 8 1629 242 305 129 18 chr1 136938488 136938523 -60256909 - B2_Mm2 SINE B2 -1 194 8 8 1629 644 248 75 0 chr1 136938523 136938656 -60256776 - RSINE1 SINE B4 -14 151 9 8 1629 453 236 165 85 chr1 136938692 136938868 -60256564 + B3A SINE B2 2 191 -7 8 1629 21 36 0 0 chr1 136938918 136938946 -60256486 + AT_rich Low_complexity Low_complexity 1 28 0 8 1629 834 192 33 0 chr1 136939618 136939769 -60255663 + RSINE1 SINE B4 2 157 -8 8 1629 989 255 69 27 chr1 136940069 136940331 -60255101 - B4 SINE B4 -16 276 4 8 1629 227 319 0 0 chr1 136940519 136940588 -60254844 - ID4 SINE ID -14 69 1 8 1629 301 403 50 25 chr1 136940693 136940932 -60254500 + L1MEc LINE L1 178 422 -5978 8 1629 219 297 15 45 chr1 136941339 136941406 -60254026 + ID SINE ID 16 80 -144 8 1629 619 284 0 0 chr1 136941406 136941547 -60253885 + B1F1 SINE Alu 1 141 -8 8 1629 913 156 0 0 chr1 136941557 136941692 -60253740 + B1_Mur3 SINE Alu 1 135 -14 8 1629 762 43 0 0 chr1 136941692 136941786 -60253646 + (GAGAA)n Simple_repeat Simple_repeat 4 97 0 8 1629 1279 73 83 6 chr1 136941884 136942045 -60253387 + B2_Mm2 SINE B2 2 177 -18 8 1629 681 47 0 0 chr1 136942045 136942130 -60253302 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 8 1629 1279 73 83 6 chr1 136942130 136942148 -60253284 + B2_Mm2 SINE B2 178 195 0 8 1629 256 257 173 9 chr1 136942232 136942342 -60253090 + ORR1E LTR MaLR 8 135 -224 8 1629 380 38 38 0 chr1 136942424 136942477 -60252955 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 8 1629 555 16 0 0 chr1 136942569 136942633 -60252799 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1629 387 103 51 10 chr1 136943379 136943477 -60251955 + (CA)n Simple_repeat Simple_repeat 1 102 0 8 1629 192 158 0 0 chr1 136943547 136943585 -60251847 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1629 378 0 0 0 chr1 136943605 136943647 -60251785 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1629 577 107 35 21 chr1 136943684 136943827 -60251605 + (CA)n Simple_repeat Simple_repeat 2 146 0 8 1629 246 136 0 0 chr1 136943899 136943943 -60251489 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1629 342 0 0 0 chr1 136943963 136944001 -60251431 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1629 257 212 27 112 chr1 136944010 136944126 -60251306 + L1M2 LINE L1 4323 4434 -1709 9 1629 242 366 0 0 chr1 136944126 136944208 -60251224 + ID4_ SINE ID 1 82 -1 9 1629 257 229 38 105 chr1 136944208 136944269 -60251163 + L1M2 LINE L1 4432 4497 -1643 9 1629 298 203 80 13 chr1 136944360 136944435 -60250997 + PB1D10 SINE Alu 38 117 0 9 1629 233 138 100 33 chr1 136944649 136944709 -60250723 + L1MB7 LINE L1 6115 6178 0 9 1629 364 98 0 0 chr1 136944897 136944958 -60250474 - Lx2 LINE L1 -1 6996 6936 9 1629 437 225 0 59 chr1 136945082 136945200 -60250232 + L1ME4a LINE L1 5983 6093 -31 9 1629 233 315 0 14 chr1 136947832 136947906 -60247526 + CT-rich Low_complexity Low_complexity 1 73 0 9 1629 180 0 0 0 chr1 136948033 136948053 -60247379 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 9 1629 705 117 0 0 chr1 136948555 136948692 -60246740 + (TC)n Simple_repeat Simple_repeat 2 138 0 9 1629 343 232 0 35 chr1 136949261 136949346 -60246086 + PB1D10 SINE Alu 34 115 -2 9 1629 277 272 128 13 chr1 136951060 136951209 -60244223 + MIR3 SINE MIR 43 208 0 9 1629 426 282 36 0 chr1 136952361 136952471 -60242961 + PB1D9 SINE Alu 2 115 -5 9 1629 328 389 14 0 chr1 136952526 136952670 -60242762 + MIRb SINE MIR 116 261 -7 9 1629 314 237 46 59 chr1 136953980 136954104 -60241328 - PB1D10 SINE Alu 0 148 16 9 1629 246 291 83 25 chr1 136954194 136954314 -60241118 + MLT1D LTR MaLR 7 133 -372 9 1629 274 307 48 19 chr1 136954600 136954703 -60240729 - MER5A DNA MER1_type -26 163 58 9 1629 269 294 54 0 chr1 136954703 136954795 -60240637 - PB1D10 SINE Alu -9 108 12 9 1629 297 287 0 54 chr1 136955626 136955718 -60239714 + MIR SINE MIR 97 183 -79 9 1629 299 280 164 4 chr1 136956143 136956258 -60239174 - MIRc SINE MIR -45 163 35 9 1629 240 357 0 0 chr1 136956331 136956415 -60239017 + MIR SINE MIR 60 143 -65 9 1629 190 56 56 0 chr1 136957903 136957939 -60237493 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1629 217 308 93 8 chr1 136958144 136958262 -60237170 - MIRc SINE MIR -20 248 121 9 1629 1408 138 13 4 chr1 136958998 136959231 -60236201 + Lx2A1 LINE L1 6774 7008 0 9 1629 306 125 0 0 chr1 136959231 136959279 -60236153 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 9 1629 293 286 114 0 chr1 136960443 136960548 -60234884 + ID_B1 SINE B4 80 196 -28 9 1629 320 240 125 0 chr1 136960454 136960558 -60234874 + B1_Mus1 SINE Alu 11 127 -21 9 1629 216 238 0 0 chr1 136960563 136960626 -60234806 + GA-rich Low_complexity Low_complexity 2 64 0 9 1629 239 412 34 0 chr1 136960894 136961042 -60234390 - FordPrefect_a DNA Tip100 -166 342 190 9 1629 1080 217 20 0 chr1 136961168 136961371 -60234061 + B3 SINE B2 5 211 -5 9 1629 273 29 0 0 chr1 136961451 136961485 -60233947 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1629 3537 33 0 0 chr1 136961509 136961905 -60233527 - MTA_Mm LTR MaLR 0 396 1 9 1629 847 232 119 54 chr1 136961906 136962166 -60233266 - B4 SINE B4 -15 277 1 9 1629 351 0 0 0 chr1 136962282 136962321 -60233111 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 9 1629 267 333 56 0 chr1 136962705 136962795 -60232637 + MIRc SINE MIR 56 150 -118 9 1629 285 261 0 0 chr1 136962826 136962891 -60232541 + ID4 SINE ID 5 69 -14 9 1629 182 118 29 0 chr1 136962907 136962941 -60232491 + (TGG)n Simple_repeat Simple_repeat 1 35 0 9 1629 341 319 63 7 chr1 136963000 136963142 -60232290 - FordPrefect_a DNA Tip100 -114 394 245 9 1629 290 274 282 0 chr1 136963471 136963595 -60231837 - RSINE1 SINE B4 -4 161 3 9 1629 368 245 0 15 chr1 136964435 136964533 -60230899 - ID4_ SINE ID -41 111 18 9 1629 911 278 5 19 chr1 136964533 136964749 -60230683 - B3 SINE B2 -3 213 1 9 1629 315 255 42 11 chr1 136964759 136964854 -60230578 - PB1D10 SINE Alu -7 110 13 9 1629 271 350 94 0 chr1 136966932 136967049 -60228383 - MER91A DNA Tip100 -57 139 12 9 1629 224 304 57 14 chr1 136967510 136967580 -60227852 + PB1D7 SINE Alu 1 73 -47 9 1629 313 269 0 88 chr1 136967653 136967767 -60227665 + B1_Mur1 SINE Alu 44 147 -2 9 1629 217 132 0 0 chr1 136967772 136967810 -60227622 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1629 580 290 29 58 chr1 136968136 136968221 -60227211 - B4 SINE B4 0 292 218 9 1629 212 0 36 0 chr1 136968221 136968249 -60227183 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1629 580 290 29 58 chr1 136968249 136968368 -60227064 - B4 SINE B4 -75 217 95 9 1629 909 168 0 0 chr1 136968378 136968593 -60226839 + CT-rich Low_complexity Low_complexity 1 215 0 9 1629 289 345 0 63 chr1 136968612 136968770 -60226662 - B1_Mur3 SINE Alu -1 148 1 9 1629 730 306 19 0 chr1 136968770 136968842 -60226590 - B4 SINE B4 -206 86 11 9 1629 557 248 17 0 chr1 136968875 136968992 -60226440 - ID_B1 SINE B4 -104 120 2 9 1629 516 292 32 25 chr1 136969009 136969167 -60226265 + RSINE1 SINE B4 3 161 -4 9 1630 227 295 25 37 chr1 136970246 136970327 -60225105 + MT2B2 LTR ERVL 161 240 -344 9 1630 528 213 92 23 chr1 136970255 136970385 -60225047 + B1F SINE Alu 6 144 -5 9 1630 495 0 0 0 chr1 136970460 136970515 -60224917 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1630 373 325 0 0 chr1 136970590 136970704 -60224728 - PB1D10 SINE Alu -3 114 1 9 1630 739 238 51 20 chr1 136971108 136971305 -60224127 + B3 SINE B2 8 210 -6 9 1630 247 289 20 91 chr1 136971335 136971434 -60223998 + MT2B2 LTR ERVL 154 245 -339 9 1630 680 200 22 7 chr1 136971354 136971490 -60223942 + B1F SINE Alu 11 148 -1 9 1630 189 148 32 32 chr1 136971709 136971772 -60223660 + (CCCA)n Simple_repeat Simple_repeat 2 64 0 9 1630 418 172 16 32 chr1 136972180 136972306 -60223126 + GA-rich Low_complexity Low_complexity 1 124 0 9 1630 370 339 0 0 chr1 136972822 136972937 -60222495 + RSINE1 SINE B4 2 116 -49 9 1630 295 305 164 45 chr1 136973058 136973192 -60222240 + MIR SINE MIR 103 252 -10 9 1630 449 169 44 55 chr1 136975164 136975438 -60219994 + (CA)n Simple_repeat Simple_repeat 1 271 0 9 1630 274 217 52 37 chr1 136975400 136975534 -60219898 + (CATATA)n Simple_repeat Simple_repeat 1 136 0 9 1630 388 168 74 0 chr1 136976349 136976444 -60218988 - L1MA9 LINE L1 -42 6270 6169 9 1630 432 0 0 0 chr1 136976493 136976541 -60218891 + (ACTG)n Simple_repeat Simple_repeat 2 49 0 9 1630 295 286 40 92 chr1 136976704 136976907 -60218525 + MIR SINE MIR 72 268 0 9 1630 264 307 98 10 chr1 136976933 136977035 -60218397 - PB1D10 SINE Alu -6 111 1 9 1630 333 0 0 0 chr1 136977244 136977281 -60218151 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1630 822 126 46 59 chr1 136977300 136977452 -60217980 + B1_Mur4 SINE Alu 1 150 0 9 1630 212 184 0 0 chr1 136977452 136977490 -60217942 + A-rich Low_complexity Low_complexity 1 38 0 9 1630 251 200 0 0 chr1 136977572 136977627 -60217805 + ID4 SINE ID 5 59 -24 9 1630 255 179 0 0 chr1 136979107 136979174 -60216258 + (TGG)n Simple_repeat Simple_repeat 1 67 0 9 1630 517 216 25 25 chr1 136979177 136979296 -60216136 + B1_Mur4 SINE Alu 6 124 -26 9 1630 240 321 9 35 chr1 136979198 136979314 -60216118 - YREP_Mm Unknown Unknown -1518 294 182 9 1630 180 368 37 9 chr1 136980005 136980112 -60215320 - L2c LINE L2 -38 3349 3240 9 1630 339 106 0 0 chr1 136980397 136980444 -60214988 - HAL1-3A_ME LINE L1 -836 2022 1976 9 1630 285 234 0 0 chr1 136980458 136980535 -60214897 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 9 1630 432 200 12 6 chr1 136980542 136980708 -60214724 + (TG)n Simple_repeat Simple_repeat 2 168 0 9 1630 259 228 0 0 chr1 136980719 136980776 -60214656 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1630 469 249 170 71 chr1 136980777 136980959 -60214473 - B3 SINE B2 -15 201 2 9 1630 184 333 39 23 chr1 136982496 136982625 -60212807 + MIR SINE MIR 60 190 -72 9 1630 321 26 0 0 chr1 136983535 136983573 -60211859 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1630 229 316 127 51 chr1 136983585 136983742 -60211690 + MLT1D LTR MaLR 48 216 -289 9 1630 255 323 54 0 chr1 136983792 136983885 -60211547 + MLT1D LTR MaLR 408 505 0 9 1630 430 288 150 12 chr1 136984042 136984288 -60211144 + L1ME3A LINE L1 5616 5895 -278 9 1630 414 321 41 29 chr1 136984345 136984515 -60210917 + L1ME3A LINE L1 5984 6155 -18 9 1630 336 260 14 0 chr1 136984532 136984605 -60210827 - ID4_ SINE ID 0 83 10 9 1630 420 336 0 60 chr1 136984645 136984794 -60210638 + ID_B1 SINE B4 85 224 0 9 1630 790 259 197 20 chr1 136984795 136984974 -60210458 + B4A SINE B4 2 216 -76 9 1630 834 20 0 0 chr1 136984974 136985074 -60210358 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 9 1630 661 259 81 20 chr1 136985080 136985277 -60210155 + B3 SINE B2 2 210 -6 9 1630 790 259 197 20 chr1 136985277 136985334 -60210098 + B4A SINE B4 221 287 -5 9 1630 591 274 13 44 chr1 136985387 136985576 -60209856 + B3A SINE B2 35 215 -1 9 1630 667 297 11 26 chr1 136986974 136987164 -60208268 - B4A SINE B4 -105 187 1 9 1630 261 226 247 0 chr1 136987240 136987333 -60208099 + PB1D7 SINE Alu 5 120 0 9 1630 485 226 187 5 chr1 136988982 136989169 -60206263 - Tigger7 DNA MER2_type -8 2483 2263 9 1630 973 320 40 35 chr1 136989199 136989604 -60205828 - Tigger7 DNA MER2_type -2083 408 2 9 1630 186 283 0 48 chr1 136989621 136989684 -60205748 + L2a LINE L2 3362 3421 -5 9 1630 213 246 70 0 chr1 136989735 136989792 -60205640 - MIRb SINE MIR -81 187 127 9 1630 204 264 0 36 chr1 136989814 136989869 -60205563 - MIR SINE MIR -195 67 15 9 1630 471 209 0 0 chr1 136989906 136990011 -60205421 + CT-rich Low_complexity Low_complexity 1 105 0 9 1630 639 0 0 0 chr1 136990134 136990205 -60205227 + (TTTTG)n Simple_repeat Simple_repeat 4 74 0 9 1630 954 125 7 0 chr1 136990205 136990341 -60205091 - B1_Mur4 SINE Alu -12 138 2 9 1630 305 307 50 38 chr1 136990576 136990735 -60204697 + Tigger7 DNA MER2_type 2304 2464 -27 1 1630 531 0 0 0 chr1 136990848 136990907 -60204525 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1630 918 279 5 5 chr1 136993250 136993466 -60201966 + B3 SINE B2 1 216 0 1 1630 213 217 109 0 chr1 136993480 136993526 -60201906 + ID4 SINE ID 4 54 -29 1 1630 450 0 0 0 chr1 136993541 136993591 -60201841 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1630 420 255 5 32 chr1 136993862 136993978 -60201454 + PB1D10 SINE Alu 25 139 -10 1 1630 191 280 113 57 chr1 136994600 136994706 -60200726 + MIRc SINE MIR 115 226 -42 1 1630 1031 90 0 0 chr1 136996349 136996483 -60198949 + B1_Mur4 SINE Alu 5 138 -12 1 1630 1016 16 0 8 chr1 136996484 136996607 -60198825 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1 1630 1121 0 8 0 chr1 136996612 136996741 -60198691 + (GAGAA)n Simple_repeat Simple_repeat 4 133 0 1 1630 206 320 53 0 chr1 136997898 136997973 -60197459 - MIRb SINE MIR -60 208 130 1 1630 507 112 0 0 chr1 136998139 136998219 -60197213 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1630 726 250 48 92 chr1 136999202 136999431 -60196001 + B4 SINE B4 61 279 -13 1 1630 459 0 0 0 chr1 136999488 136999539 -60195893 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1630 405 0 0 0 chr1 137001193 137001238 -60194194 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1630 201 24 47 47 chr1 137002264 137002307 -60193125 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1630 297 246 70 96 chr1 137002309 137002450 -60192982 - MIR3 SINE MIR -107 169 29 3 1630 402 21 0 0 chr1 137003294 137003341 -60192091 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1630 559 171 137 0 chr1 137003639 137003750 -60191682 + B3 SINE B2 3 129 -87 5 1630 318 115 0 0 chr1 137003750 137003802 -60191630 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1630 954 232 13 31 chr1 137004010 137004237 -60191195 - ID_B1 SINE B4 -1 223 1 7 1630 2256 103 9 12 chr1 137004583 137004906 -60190526 + ORR1A3 LTR MaLR 5 326 0 8 1630 1674 21 21 0 chr1 137008135 137008324 -60187108 - B2_Mm1a SINE B2 0 193 1 9 1630 481 289 0 0 chr1 137009849 137009963 -60185469 - PB1D10 SINE Alu -1 116 3 1 1630 261 0 0 0 chr1 137010010 137010039 -60185393 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1630 576 0 0 0 chr1 137010397 137010461 -60184971 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1630 315 0 0 0 chr1 137010461 137010495 -60184937 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1630 288 273 26 0 chr1 137011524 137011601 -60183831 - ID4 SINE ID -2 81 3 1 1630 417 286 23 31 chr1 137011781 137011911 -60183521 + MLT2D LTR ERVL 1 129 -285 1 1630 712 145 26 0 chr1 137011945 137012062 -60183370 - B1_Mur4 SINE Alu -6 144 25 1 1630 608 305 110 4 chr1 137012111 137012348 -60183084 - B4A SINE B4 -29 263 2 1 1630 375 294 126 23 chr1 137012360 137012374 -60183058 + MLT2D LTR ERVL 99 112 -302 1 1630 1561 58 5 0 chr1 137012374 137012565 -60182867 + B2_Mm1a SINE B2 2 193 0 1 1630 375 294 126 23 chr1 137012565 137012724 -60182708 + MLT2D LTR ERVL 113 290 -124 1 1630 1426 89 119 0 chr1 137013311 137013513 -60181919 + URR1A DNA MER1_type 1 226 0 1 1630 244 324 39 10 chr1 137013732 137013835 -60181597 + MER33 DNA MER1_type 14 119 -205 2 1630 472 276 171 0 chr1 137013910 137014080 -60181352 - ID_B1 SINE B4 -2 222 24 2 1630 326 268 123 82 chr1 137014170 137014292 -60181140 - B1_Mur3 SINE Alu -22 127 1 2 1630 213 39 0 0 chr1 137015071 137015097 -60180335 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 2 1630 390 326 0 0 chr1 137015609 137015781 -60179651 + C-rich Low_complexity Low_complexity 1 172 0 2 1630 241 184 82 0 chr1 137017969 137018018 -60177414 - MIR SINE MIR -62 146 94 2 1630 229 422 31 6 chr1 137018453 137018615 -60176817 + MIR SINE MIR 44 209 -53 2 1630 203 317 0 0 chr1 137021385 137021445 -60173987 - MIRb SINE MIR -136 132 73 2 1630 504 81 0 0 chr1 137024988 137025062 -60170370 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1630 414 0 0 0 chr1 137025332 137025378 -60170054 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1630 234 0 0 0 chr1 137027012 137027038 -60168394 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1630 180 0 0 0 chr1 137027082 137027102 -60168330 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 3 1630 978 9 0 0 chr1 137027218 137027329 -60168103 + (GGGA)n Simple_repeat Simple_repeat 4 114 0 3 1630 220 204 167 0 chr1 137027334 137027388 -60168044 - MIRc SINE MIR -131 137 75 3 1630 489 288 28 21 chr1 137031574 137031716 -60163716 + ID_B1 SINE B4 82 224 0 3 1630 257 327 146 18 chr1 137033618 137033783 -60161649 - MIRc SINE MIR -61 207 19 3 1630 297 66 49 0 chr1 137034588 137034649 -60160783 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 3 1630 1270 21 0 0 chr1 137034650 137034793 -60160639 - B1_Mus2 SINE Alu -2 145 3 3 1630 822 139 16 0 chr1 137034794 137034923 -60160509 + B1_Mus1 SINE Alu 12 142 -6 3 1630 195 42 0 0 chr1 137034926 137034950 -60160482 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1630 534 200 10 0 chr1 137035143 137035243 -60160189 + RSINE1 SINE B4 2 102 -63 4 1630 675 99 0 0 chr1 137035274 137035375 -60160057 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 4 1630 314 319 134 6 chr1 137035398 137035562 -60159870 - MIRc SINE MIR -33 235 51 4 1630 458 219 15 130 chr1 137036125 137036273 -60159159 - PB1D7 SINE Alu -1 148 8 4 1630 188 355 90 48 chr1 137036276 137036465 -60158967 - L2a LINE L2 -21 3405 3209 4 1630 261 0 0 0 chr1 137036555 137036584 -60158848 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1630 529 289 41 76 chr1 137036845 137037017 -60158415 + ID_B1 SINE B4 55 209 -15 4 1630 246 32 0 0 chr1 137037030 137037061 -60158371 + (GGA)n Simple_repeat Simple_repeat 2 32 0 4 1630 280 306 0 12 chr1 137037438 137037524 -60157908 + PB1D10 SINE Alu 33 117 0 4 1630 530 314 7 7 chr1 137037531 137037685 -60157747 + RSINE1 SINE B4 2 155 -10 4 1630 267 31 0 0 chr1 137037687 137037719 -60157713 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1630 186 43 0 0 chr1 137037719 137037741 -60157691 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1630 23 0 0 0 chr1 137037741 137037764 -60157668 + AT_rich Low_complexity Low_complexity 1 23 0 5 1630 658 184 8 0 chr1 137037806 137037931 -60157501 + B1_Mur1 SINE Alu 23 148 -1 5 1630 406 223 117 0 chr1 137037996 137038090 -60157342 + B1F SINE Alu 31 135 -14 5 1630 611 151 79 0 chr1 137038092 137038217 -60157215 + B1_Mus1 SINE Alu 5 143 -6 5 1630 414 0 0 0 chr1 137038218 137038264 -60157168 + (TTAA)n Simple_repeat Simple_repeat 4 49 0 5 1630 302 299 35 61 chr1 137038918 137039032 -60156400 + ID_B1 SINE B4 88 198 -26 5 1630 247 317 61 61 chr1 137039032 137039049 -60156383 + B1_Mus2 SINE Alu 7 137 -10 5 1630 753 170 82 0 chr1 137039234 137039369 -60156063 - B1_Mur4 SINE Alu 0 150 5 5 1630 540 278 30 0 chr1 137040489 137040622 -60154810 + B1_Mur1 SINE Alu 3 139 -10 6 1630 364 255 43 52 chr1 137041213 137041329 -60154103 + PB1D10 SINE Alu 3 117 0 6 1630 1139 56 0 27 chr1 137041340 137041475 -60153957 + B1_Mm SINE Alu 1 135 -12 6 1630 578 14 14 0 chr1 137041475 137041546 -60153886 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 6 1630 1139 56 0 27 chr1 137041546 137041557 -60153875 + B1_Mm SINE Alu 136 143 -4 6 1630 207 0 0 0 chr1 137041558 137041581 -60153851 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1630 957 284 62 51 chr1 137042070 137042425 -60153007 - MLT1A0 LTR MaLR -1 466 6 6 1630 33 25 0 0 chr1 137043232 137043272 -60152160 + GC_rich Low_complexity Low_complexity 1 40 0 6 1630 27 29 0 0 chr1 137043320 137043354 -60152078 + GC_rich Low_complexity Low_complexity 1 34 0 6 1630 382 243 42 59 chr1 137045367 137045485 -60149947 + PB1D10 SINE Alu 1 116 -1 6 1630 255 61 0 0 chr1 137046012 137046045 -60149387 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1630 1260 41 0 0 chr1 137046045 137046191 -60149241 - B1_Mus2 SINE Alu 0 147 2 7 1630 333 279 11 11 chr1 137046488 137046575 -60148857 + PB1D10 SINE Alu 1 87 -30 7 1630 245 29 0 29 chr1 137046580 137046615 -60148817 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 1630 973 229 62 5 chr1 137046620 137046831 -60148601 + ID_B1 SINE B4 1 223 -1 7 1630 462 198 0 0 chr1 137047263 137047344 -60148088 - 5S rRNA rRNA -33 88 8 7 1630 428 258 8 84 chr1 137047361 137047492 -60147940 + RSINE1 SINE B4 45 165 0 7 1630 396 0 0 0 chr1 137047549 137047593 -60147839 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 7 1630 518 250 27 0 chr1 137047597 137047709 -60147723 - ID_B1 SINE B4 -7 217 103 7 1630 241 277 15 15 chr1 137048329 137048395 -60147037 - L2b LINE L2 -86 3289 3224 7 1630 843 137 30 0 chr1 137048488 137048619 -60146813 - B1_Mus1 SINE Alu -13 135 1 7 1630 44 56 0 0 chr1 137049564 137049636 -60145796 + AT_rich Low_complexity Low_complexity 1 72 0 8 1630 213 312 94 0 chr1 137049746 137049810 -60145622 + ID4 SINE ID 8 77 -6 8 1630 595 197 85 28 chr1 137049920 137050061 -60145371 - B1_Mur1 SINE Alu 0 149 1 8 1630 698 107 0 35 chr1 137050091 137050207 -60145225 - B1_Mur3 SINE Alu 0 149 38 8 1630 350 131 0 104 chr1 137050140 137050217 -60145215 - MT2B LTR ERVL -345 256 188 8 1630 905 103 32 58 chr1 137050241 137050395 -60145037 + B1_Mur4 SINE Alu 1 150 0 8 1630 231 114 0 0 chr1 137050404 137050439 -60144993 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 8 1630 282 37 73 18 chr1 137051626 137051681 -60143751 + (TGGGGG)n Simple_repeat Simple_repeat 2 59 0 8 1630 30 27 0 0 chr1 137052198 137052235 -60143197 + AT_rich Low_complexity Low_complexity 1 37 0 8 1630 243 0 0 0 chr1 137052670 137052697 -60142735 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1630 220 218 55 0 chr1 137053385 137053440 -60141992 + B4 SINE B4 2 59 -233 9 1630 234 250 0 72 chr1 137053805 137053874 -60141558 + ID4 SINE ID 1 64 -19 9 1630 1424 70 48 0 chr1 137053972 137054158 -60141274 + B2_Mm2 SINE B2 1 195 0 9 1630 347 261 91 0 chr1 137054532 137054620 -60140812 + B3A SINE B2 1 96 -102 9 1630 207 0 0 0 chr1 137054680 137054703 -60140729 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1630 1269 54 0 0 chr1 137054723 137054871 -60140561 + B1_Mus1 SINE Alu 1 148 0 9 1630 189 0 0 0 chr1 137057594 137057615 -60137817 + (CAG)n Simple_repeat Simple_repeat 3 23 0 9 1630 197 300 43 0 chr1 137058520 137058590 -60136842 - MIRc SINE MIR -121 147 75 9 1630 580 293 0 0 chr1 137058750 137058883 -60136549 + ID_B1 SINE B4 84 216 -8 9 1630 725 122 9 18 chr1 137058940 137059049 -60136383 + B1_Mus1 SINE Alu 7 114 -34 9 1630 374 333 17 0 chr1 137059798 137059918 -60135514 + ID_B1 SINE B4 87 208 -16 1 1630 540 0 0 0 chr1 137059924 137059984 -60135448 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1630 612 266 35 8 chr1 137059992 137060147 -60135285 + ID_B1 SINE B4 81 237 -55 1 1630 211 366 0 41 chr1 137060167 137060264 -60135168 + PB1D7 SINE Alu 2 94 -26 1 1630 323 264 0 43 chr1 137060296 137060399 -60135033 + BC1_Mm scRNA scRNA 6 103 -49 1 1630 233 241 121 0 chr1 137060399 137060457 -60134975 + ID4_ SINE ID 2 66 -17 1 1630 323 264 0 43 chr1 137060457 137060468 -60134964 + BC1_Mm scRNA scRNA 104 114 -38 1 1630 492 266 42 35 chr1 137060474 137060618 -60134814 + B1F1 SINE Alu 2 146 -3 1 1630 266 247 88 68 chr1 137060675 137060816 -60134616 - MIRb SINE MIR -37 171 29 1 1630 645 213 23 0 chr1 137060817 137060940 -60134492 + B1F2 SINE Alu 2 129 -20 1 1630 624 209 0 34 chr1 137061051 137061170 -60134262 + B1_Mur1 SINE Alu 8 122 -27 1 1630 889 265 5 20 chr1 137061442 137061642 -60133790 - B3 SINE B2 0 216 20 1 1630 743 165 63 20 chr1 137061680 137061829 -60133603 + B1_Mur4 SINE Alu 3 149 -1 1 1630 293 215 132 76 chr1 137061819 137061935 -60133497 + PB1D9 SINE Alu 27 149 0 1 1630 359 309 0 106 chr1 137061936 137062059 -60133373 + ID_B1 SINE B4 78 187 -37 1 1630 1172 56 14 0 chr1 137062060 137062204 -60133228 + B1_Mus1 SINE Alu 2 147 -1 1 1630 726 97 0 0 chr1 137062255 137062368 -60133064 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 1630 466 260 20 0 chr1 137062398 137062498 -60132934 + B1F1 SINE Alu 43 144 -5 1 1630 210 118 0 0 chr1 137062503 137062537 -60132895 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1630 511 167 41 10 chr1 137064484 137064581 -60130851 + PB1D10 SINE Alu 2 101 -16 1 1630 246 62 0 0 chr1 137064684 137064716 -60130716 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1630 790 154 16 0 chr1 137064719 137064842 -60130590 - B1_Mus2 SINE Alu -13 134 10 1 1630 1478 33 55 6 chr1 137064871 137064889 -60130543 - B2_Mm1a SINE B2 0 193 176 1 1630 422 0 38 0 chr1 137064889 137064942 -60130490 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1 1630 1478 33 55 6 chr1 137064942 137065106 -60130326 - B2_Mm1a SINE B2 -18 175 2 1 1630 297 257 27 0 chr1 137065345 137065419 -60130013 + ID4_ SINE ID 3 78 -5 1 1630 225 0 0 0 chr1 137065437 137065462 -60129970 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1 1630 218 335 79 92 chr1 137065497 137065724 -60129708 - L2b LINE L2 -127 3248 3025 1 1630 787 151 42 21 chr1 137065858 137066000 -60129432 + B1_Mus1 SINE Alu 4 148 0 1 1630 230 298 76 9 chr1 137066996 137067101 -60128331 - MIRb SINE MIR -142 126 15 1 1630 259 311 0 0 chr1 137067127 137067201 -60128231 - MIR3 SINE MIR -32 176 103 1 1630 1004 178 24 128 chr1 137067281 137067421 -60128011 + URR1B DNA MER1_type 1 142 -83 1 1630 1209 55 0 0 chr1 137067421 137067567 -60127865 + B1_Mm SINE Alu 2 147 0 1 1630 1004 178 24 128 chr1 137067567 137067677 -60127755 + URR1B DNA MER1_type 143 225 0 1 1630 1022 95 40 101 chr1 137067871 137068070 -60127362 + B2_Mm2 SINE B2 1 187 -8 1 1630 298 193 123 0 chr1 137068077 137068134 -60127298 + B4 SINE B4 19 82 -210 1 1630 291 196 0 0 chr1 137068093 137068139 -60127293 + B3 SINE B2 42 87 -129 1 1630 1158 91 33 28 chr1 137068205 137068385 -60127047 + B2_Mm2 SINE B2 1 181 -14 1 1630 427 331 98 11 chr1 137068396 137068579 -60126853 + B4 SINE B4 94 292 0 1 1630 333 0 0 0 chr1 137068585 137068622 -60126810 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1630 182 288 0 83 chr1 137068973 137069045 -60126387 - MIR3 SINE MIR -4 204 139 1 1630 1005 155 106 25 chr1 137069505 137069575 -60125857 - B3 SINE B2 0 216 149 1 1630 276 100 0 0 chr1 137069575 137069615 -60125817 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1630 1005 155 106 25 chr1 137069615 137069743 -60125689 - B3 SINE B2 -68 148 3 1 1630 311 250 28 0 chr1 137069951 137070023 -60125409 - L2b LINE L2 -5 3370 3297 1 1630 276 233 40 14 chr1 137070079 137070153 -60125279 + B1F2 SINE Alu 46 121 -28 1 1630 781 251 10 62 chr1 137070174 137070382 -60125050 + B3A SINE B2 1 197 -1 1 1630 21 57 0 0 chr1 137070382 137070417 -60125015 + AT_rich Low_complexity Low_complexity 1 35 0 1 1630 29 0 0 0 chr1 137070746 137070775 -60124657 + AT_rich Low_complexity Low_complexity 1 29 0 1 1630 1204 50 0 0 chr1 137070783 137070922 -60124510 + B1_Mus2 SINE Alu 1 139 -8 1 1630 576 70 0 0 chr1 137070922 137071008 -60124424 + (CTAA)n Simple_repeat Simple_repeat 3 88 0 1 1630 786 194 28 0 chr1 137071062 137071206 -60124226 - B1_Mur1 SINE Alu 0 149 2 1 1630 608 297 14 0 chr1 137071620 137071758 -60123674 + RSINE1 SINE B4 25 164 -1 1 1630 358 345 90 35 chr1 137071835 137072036 -60123396 + ID_B1 SINE B4 1 212 -12 1 1630 692 243 14 91 chr1 137072043 137072211 -60123221 - B3A SINE B2 -5 193 41 1 1630 523 255 0 0 chr1 137072211 137072317 -60123115 - PB1D9 SINE Alu -13 107 2 1 1630 692 243 14 91 chr1 137072317 137072356 -60123076 - B3A SINE B2 -158 40 2 1 1630 373 130 0 0 chr1 137072397 137072451 -60122981 + B3 SINE B2 71 124 -92 1 1630 1452 65 21 0 chr1 137072493 137072679 -60122753 + B2_Mm2 SINE B2 1 190 -5 1 1630 1890 194 58 58 chr1 137072798 137072895 -60122537 + MTD LTR MaLR 13 109 -310 1 1630 231 22 41 61 chr1 137072895 137072944 -60122488 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 1630 1890 194 58 58 chr1 137072944 137073241 -60122191 + MTD LTR MaLR 110 407 -12 1 1630 1221 54 0 7 chr1 137073454 137073603 -60121829 + B1_Mus1 SINE Alu 1 148 0 1 1630 1762 132 33 25 chr1 137073784 137074143 -60121289 - ORR1C1 LTR MaLR -3 375 59 1 1630 292 240 63 135 chr1 137074140 137074251 -60121181 + PB1D7 SINE Alu 18 120 0 1 1630 194 0 0 37 chr1 137074807 137074834 -60120598 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1630 921 151 0 7 chr1 137074839 137074979 -60120453 - B1_Mm SINE Alu -8 139 1 1 1630 629 221 35 21 chr1 137074979 137075122 -60120310 - B1_Mur1 SINE Alu -3 146 2 1 1630 268 294 108 0 chr1 137075222 137075324 -60120108 - B4 SINE B4 -73 219 107 1 1630 403 175 17 25 chr1 137075246 137075343 -60120089 - PB1D10 SINE Alu -19 98 3 1 1630 325 146 20 59 chr1 137075355 137075457 -60119975 + CT-rich Low_complexity Low_complexity 3 100 0 1 1630 218 163 102 0 chr1 137076192 137076241 -60119191 + ID2 SINE ID 3 56 -27 1 1630 25 0 0 0 chr1 137076276 137076301 -60119131 + AT_rich Low_complexity Low_complexity 1 25 0 1 1630 780 196 0 33 chr1 137076612 137076765 -60118667 - B1_Mur1 SINE Alu 0 149 2 1 1630 1144 88 0 0 chr1 137076814 137076961 -60118471 + B1_Mus2 SINE Alu 1 147 0 1 1630 294 319 51 51 chr1 137077749 137077924 -60117508 - MamSINE1 SINE tRNA -28 262 88 1 1630 200 274 52 52 chr1 137078960 137079037 -60116395 - MIRc SINE MIR -175 93 17 1 1630 351 273 72 50 chr1 137079506 137079645 -60115787 - LTR48B LTR ERV1 -502 142 1 1 1630 225 0 0 0 chr1 137079707 137079732 -60115700 + (GCCTG)n Simple_repeat Simple_repeat 3 27 0 1 1630 238 205 82 82 chr1 137079917 137080002 -60115430 + RLTR28 LTR ERVL 4 88 -436 1 1630 486 0 0 0 chr1 137080312 137080366 -60115066 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1630 380 265 132 32 chr1 137080928 137081139 -60114293 + MIRb SINE MIR 1 234 -34 1 1630 429 54 0 0 chr1 137081263 137081319 -60114113 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1630 952 159 0 7 chr1 137081370 137081516 -60113916 - B1_Mus1 SINE Alu 0 148 4 1 1630 1329 81 11 0 chr1 137081573 137081732 -60113700 + B2_Mm2 SINE B2 1 159 -36 1 1630 249 33 0 0 chr1 137081732 137081762 -60113670 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1630 1329 81 11 0 chr1 137081762 137081776 -60113656 + B2_Mm2 SINE B2 160 175 -20 1 1630 304 70 23 0 chr1 137083521 137083564 -60111868 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1630 386 211 32 8 chr1 137083567 137083691 -60111741 + CT-rich Low_complexity Low_complexity 4 130 0 1 1630 924 36 0 0 chr1 137083904 137084016 -60111416 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1630 461 256 11 47 chr1 137084105 137084218 -60111214 - B1F SINE Alu -209 105 2 1 1630 672 258 12 42 chr1 137084264 137084430 -60111002 - B3 SINE B2 -10 206 46 1 1630 28 29 0 0 chr1 137084521 137084556 -60110876 + AT_rich Low_complexity Low_complexity 1 35 0 1 1630 935 212 42 16 chr1 137084952 137085144 -60110288 + B3 SINE B2 5 201 -15 1 1630 1594 47 5 5 chr1 137085169 137085362 -60110070 - B2_Mm1t SINE B2 0 193 1 1 1630 234 0 0 0 chr1 137085501 137085527 -60109905 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1630 365 269 91 104 chr1 137085659 137085770 -60109662 + ID_B1 SINE B4 2 218 -6 1 1630 635 138 55 0 chr1 137085770 137085879 -60109553 + B1_Mus2 SINE Alu 27 141 -6 1 1630 296 278 153 29 chr1 137085995 137086132 -60109300 + RSINE1 SINE B4 4 157 -8 1 1630 413 229 13 8 chr1 137086179 137086384 -60109048 + (TG)n Simple_repeat Simple_repeat 1 206 0 1 1630 3307 35 114 5 chr1 137086384 137086812 -60108620 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1630 413 222 11 11 chr1 137086812 137086838 -60108594 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1630 356 225 5 48 chr1 137086842 137087029 -60108403 + (TATG)n Simple_repeat Simple_repeat 1 179 0 1 1630 215 86 86 0 chr1 137087063 137087098 -60108334 - B3 SINE B2 -176 40 3 1 1630 21 36 0 0 chr1 137087100 137087128 -60108304 + AT_rich Low_complexity Low_complexity 1 28 0 1 1630 654 247 27 54 chr1 137087128 137087312 -60108120 - B3 SINE B2 0 216 38 1 1630 502 188 29 29 chr1 137087303 137087407 -60108025 + B1_Mur1 SINE Alu 46 149 0 1 1630 717 227 130 36 chr1 137087411 137087603 -60107829 + B3 SINE B2 3 212 -4 2 1630 277 253 70 50 chr1 137088005 137088105 -60107327 - PB1 SINE Alu -2 125 24 2 1630 398 308 13 46 chr1 137088221 137088233 -60107199 - B1_Mur3 SINE Alu 0 149 138 2 1630 1233 54 0 0 chr1 137088233 137088380 -60107052 - B1_Mus2 SINE Alu 0 147 1 2 1630 398 308 13 46 chr1 137088380 137088403 -60107029 - B1_Mur3 SINE Alu -12 137 118 2 1630 449 0 36 0 chr1 137088403 137088459 -60106973 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 2 1630 398 308 13 46 chr1 137088459 137088575 -60106857 - B1_Mur3 SINE Alu -32 117 2 2 1630 897 209 32 0 chr1 137088580 137088738 -60106694 - RSINE1 SINE B4 0 165 3 2 1630 261 325 149 71 chr1 137088799 137089054 -60106378 - B4A SINE B4 -8 284 10 2 1630 538 259 77 23 chr1 137089145 137089345 -60106087 + B3 SINE B2 3 198 0 2 1630 322 298 12 0 chr1 137089392 137089476 -60105956 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1630 459 252 8 83 chr1 137089492 137089613 -60105819 + ID_B1 SINE B4 108 219 -5 2 1630 697 169 97 0 chr1 137089628 137089752 -60105680 + B1_Mus2 SINE Alu 12 147 0 2 1630 1226 29 0 0 chr1 137089772 137089910 -60105522 + B1_Mus1 SINE Alu 1 138 -10 2 1630 233 29 29 0 chr1 137089910 137089944 -60105488 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1630 360 283 22 0 chr1 137090692 137090784 -60104648 + PB1D10 SINE Alu 1 94 -23 2 1630 554 205 0 86 chr1 137090829 137090957 -60104475 + ID_B1 SINE B4 51 167 -57 2 1630 1934 120 62 151 chr1 137090965 137091416 -60104016 + RLTR9F LTR ERVK 1 411 -4 2 1630 1132 73 0 0 chr1 137091443 137091580 -60103852 + B1_Mm SINE Alu 1 137 -10 2 1630 375 41 0 0 chr1 137091580 137091629 -60103803 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1630 807 67 0 19 chr1 137091630 137091737 -60103695 + B1_Mm SINE Alu 1 105 -42 2 1630 541 242 94 0 chr1 137091755 137091883 -60103549 + B1_Mur2 SINE Alu 2 141 -8 2 1630 1023 71 20 11 chr1 137091982 137092127 -60103305 - B1_Mus1 SINE Alu 0 311 22 2 1630 463 157 25 100 chr1 137092035 137092155 -60103277 - MT2B LTR ERVL -337 264 154 2 1630 1306 123 29 10 chr1 137092943 137093149 -60102283 - URR1B DNA MER1_type 0 225 16 2 1630 375 276 21 31 chr1 137093297 137093394 -60102038 - B3 SINE B2 -120 96 1 2 1630 629 209 8 37 chr1 137093513 137093647 -60101785 - B1_Mur1 SINE Alu -19 130 1 2 1630 738 151 8 31 chr1 137093698 137093828 -60101604 - B1_Mus2 SINE Alu 0 147 21 2 1630 22 0 0 0 chr1 137093922 137093944 -60101488 + AT_rich Low_complexity Low_complexity 1 22 0 2 1630 218 333 0 0 chr1 137093969 137094023 -60101409 - ID4 SINE ID -22 61 8 2 1630 1272 21 7 0 chr1 137094066 137094211 -60101221 + B1_Mus2 SINE Alu 2 147 0 2 1630 198 0 0 0 chr1 137094211 137094233 -60101199 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1630 803 229 69 17 chr1 137094238 137094411 -60101021 - B3A SINE B2 -16 182 1 2 1630 504 255 138 0 chr1 137094414 137094610 -60100822 - ID_B1 SINE B4 0 224 2 2 1630 363 247 112 0 chr1 137094662 137094751 -60100681 - PB1D10 SINE Alu -8 109 11 2 1630 243 0 0 0 chr1 137094895 137094922 -60100510 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1630 316 225 48 36 chr1 137095512 137095595 -60099837 - B1_Mur2 SINE Alu 0 149 66 2 1630 551 250 101 30 chr1 137096585 137096754 -60098678 + B3A SINE B2 15 195 -3 2 1630 1173 82 0 0 chr1 137096767 137096914 -60098518 - B1_Mus2 SINE Alu 0 147 1 2 1630 195 129 0 0 chr1 137096989 137097020 -60098412 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1630 1177 90 0 11 chr1 137098215 137098394 -60097038 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 1630 1005 109 0 0 chr1 137098394 137098532 -60096900 - B1_Mus1 SINE Alu -9 139 2 2 1630 280 298 115 0 chr1 137099022 137099126 -60096306 + PB1D10 SINE Alu 2 117 0 2 1630 640 255 75 14 chr1 137099130 137099277 -60096155 + RSINE1 SINE B4 7 162 -3 2 1630 396 282 45 0 chr1 137099311 137099421 -60096011 + PB1D10 SINE Alu 1 115 -2 2 1630 307 71 24 0 chr1 137100034 137100076 -60095356 - HAL1-3A_ME LINE L1 -840 2018 1976 2 1630 384 163 0 0 chr1 137100076 137100162 -60095270 + (TCTG)n Simple_repeat Simple_repeat 2 87 0 2 1630 250 111 31 31 chr1 137100238 137100303 -60095129 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 2 1630 332 236 11 43 chr1 137100343 137100425 -60095007 - HAL1-3A_ME LINE L1 -804 2054 1975 2 1630 865 202 21 82 chr1 137100425 137100619 -60094813 - B3A SINE B2 -16 182 1 2 1630 311 131 180 0 chr1 137100640 137100701 -60094731 - ID4_ SINE ID -9 74 3 2 1630 323 341 52 30 chr1 137100915 137101145 -60094287 + L2a LINE L2 3192 3426 0 2 1631 374 255 56 9 chr1 137101762 137101869 -60093563 - PB1D7 SINE Alu -8 112 1 2 1631 289 322 22 33 chr1 137102139 137102150 -60093282 + B4A SINE B4 75 84 -208 2 1631 502 294 0 0 chr1 137102150 137102259 -60093173 + PB1D10 SINE Alu 1 109 -8 2 1631 738 164 56 14 chr1 137102533 137102675 -60092757 - B1_Mus1 SINE Alu 0 148 1 2 1631 597 197 86 14 chr1 137102707 137102846 -60092586 - B1_Mur1 SINE Alu 0 149 1 2 1631 368 228 38 0 chr1 137102856 137102935 -60092497 - PB1 SINE Alu -9 118 37 2 1631 218 242 212 0 chr1 137102960 137103026 -60092406 + ID4_ SINE ID 4 83 0 2 1631 829 146 257 0 chr1 137103110 137103281 -60092151 + B3 SINE B2 2 216 0 2 1631 435 293 55 103 chr1 137103602 137103636 -60091796 + B4 SINE B4 65 174 -117 2 1631 460 298 48 0 chr1 137103636 137103760 -60091672 + B1_Mur1 SINE Alu 14 143 -6 2 1631 435 293 55 103 chr1 137103760 137103781 -60091651 + B4 SINE B4 175 249 -42 2 1631 886 162 7 0 chr1 137103781 137103917 -60091515 + B1_Mur4 SINE Alu 13 149 -1 2 1631 261 0 0 0 chr1 137103921 137103950 -60091482 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1631 980 131 0 20 chr1 137104021 137104169 -60091263 - B1_Mur4 SINE Alu -3 147 3 2 1631 592 239 41 21 chr1 137104174 137104319 -60091113 - B1F SINE Alu -1 148 1 2 1631 426 121 0 0 chr1 137104371 137104437 -60090995 + (TGAG)n Simple_repeat Simple_repeat 2 67 0 2 1631 211 286 16 0 chr1 137104470 137104533 -60090899 - ID4_ SINE ID -16 67 4 2 1631 900 156 0 7 chr1 137104681 137104817 -60090615 + B1_Mus1 SINE Alu 1 135 -13 2 1631 198 0 0 0 chr1 137104817 137104839 -60090593 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 1631 1358 105 16 0 chr1 137104839 137105030 -60090402 + B2_Mm2 SINE B2 1 194 -1 2 1631 255 263 13 4 chr1 137105868 137105944 -60089488 - ID4_ SINE ID -3 80 3 2 1631 261 0 0 0 chr1 137106189 137106218 -60089214 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1631 508 273 27 0 chr1 137106218 137106328 -60089104 - PB1D7 SINE Alu -7 113 1 2 1631 239 268 77 127 chr1 137106373 137106395 -60089037 + ID SINE ID 51 83 -209 2 1631 837 167 35 0 chr1 137106395 137106539 -60088893 + B1_Mur1 SINE Alu 1 149 0 2 1631 253 263 0 0 chr1 137106543 137106600 -60088832 + B1_Mus2 SINE Alu 2 58 -89 2 1631 3135 148 13 35 chr1 137106914 137107454 -60087978 - RLTR12B LTR ERVK 0 528 1 2 1631 804 283 129 9 chr1 137107454 137107686 -60087746 - B4 SINE B4 -32 260 1 2 1631 273 57 0 0 chr1 137108174 137108209 -60087223 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2 1631 225 0 0 0 chr1 137108255 137108280 -60087152 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2 1631 1441 67 17 0 chr1 137108280 137108460 -60086972 - B2_Mm2 SINE B2 -12 183 1 2 1631 1176 51 0 0 chr1 137108519 137108657 -60086775 + B1_Mm SINE Alu 1 138 -9 2 1631 231 61 0 0 chr1 137108657 137108690 -60086742 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1631 542 237 154 39 chr1 137108691 137108730 -60086702 - L1MB7 LINE L1 -244 5940 5910 2 1631 331 211 53 0 chr1 137108730 137108806 -60086626 - ID4_ SINE ID 0 83 4 2 1631 542 237 154 39 chr1 137108806 137109025 -60086407 - L1MB7 LINE L1 -275 5909 5652 2 1631 229 215 0 48 chr1 137109025 137109074 -60086358 + T-rich Low_complexity Low_complexity 39 83 0 2 1631 869 169 7 20 chr1 137109074 137109225 -60086207 - B1_Mur4 SINE Alu -1 149 1 2 1631 229 215 0 48 chr1 137109225 137109258 -60086174 + T-rich Low_complexity Low_complexity 6 38 0 2 1631 374 211 32 100 chr1 137109322 137109440 -60085992 - PB1D10 SINE Alu 0 127 10 2 1631 824 193 0 0 chr1 137109606 137109746 -60085686 + B1_Mus2 SINE Alu 5 144 -3 2 1631 243 0 0 0 chr1 137109746 137109773 -60085659 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1631 278 324 50 131 chr1 137109782 137109942 -60085490 + B4A SINE B4 73 219 -73 2 1631 692 257 0 14 chr1 137109809 137109951 -60085481 + B1F SINE Alu 9 148 -1 2 1631 356 296 36 27 chr1 137110004 137110115 -60085317 - ID_B1 SINE B4 -29 195 84 2 1631 465 236 0 11 chr1 137110022 137110116 -60085316 - B1_Mus1 SINE Alu -54 94 2 2 1631 29 0 0 0 chr1 137110127 137110156 -60085276 + AT_rich Low_complexity Low_complexity 1 29 0 2 1631 591 15 0 0 chr1 137110266 137110334 -60085098 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1631 609 235 7 57 chr1 137110335 137110446 -60084986 - B1_Mur1 SINE Alu -15 134 26 2 1631 645 149 390 18 chr1 137110446 137110610 -60084822 + URR1B DNA MER1_type 1 225 0 2 1631 609 235 7 57 chr1 137110610 137110638 -60084794 - B1_Mur1 SINE Alu -124 25 2 2 1631 1015 217 184 11 chr1 137110639 137111003 -60084429 - Lx8 LINE L1 -118 7355 6929 2 1631 347 238 61 38 chr1 137111006 137111137 -60084295 - B1F2 SINE Alu -4 145 12 2 1631 710 186 47 0 chr1 137111267 137111396 -60084036 + B1_Mur2 SINE Alu 5 139 -10 3 1631 291 278 33 105 chr1 137111439 137111568 -60083864 + MLT1E LTR MaLR 436 616 -37 3 1631 1218 62 0 0 chr1 137111568 137111714 -60083718 + B1_Mus2 SINE Alu 2 147 0 3 1631 237 254 38 130 chr1 137111714 137111727 -60083705 + MLT1E LTR MaLR 520 531 -24 3 1631 1121 69 14 0 chr1 137111727 137111871 -60083561 + B1_Mus2 SINE Alu 2 147 0 3 1631 207 0 0 0 chr1 137111875 137111898 -60083534 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1631 237 254 38 130 chr1 137111898 137111923 -60083509 + MLT1E LTR MaLR 532 551 -4 3 1631 811 285 10 35 chr1 137112087 137112287 -60083145 + B3 SINE B2 1 195 -21 3 1631 984 128 0 51 chr1 137112304 137112461 -60082971 - B1_Mur4 SINE Alu 0 150 2 3 1631 30 27 0 0 chr1 137112465 137112502 -60082930 + AT_rich Low_complexity Low_complexity 1 37 0 3 1631 282 205 120 158 chr1 137112502 137112635 -60082797 + B4 SINE B4 2 129 -163 3 1631 762 179 7 91 chr1 137112797 137112951 -60082481 + B1_Mur3 SINE Alu 1 141 -8 3 1631 606 215 84 8 chr1 137113203 137113334 -60082098 + B1_Mur1 SINE Alu 2 142 -7 3 1631 657 157 65 11 chr1 137113346 137113470 -60081962 + B1_Mur3 SINE Alu 2 123 -24 3 1631 345 311 93 6 chr1 137113348 137113510 -60081922 - B3A SINE B2 -22 176 1 3 1631 225 0 0 0 chr1 137113698 137113723 -60081709 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1631 634 296 31 0 chr1 137115035 137115197 -60080235 + ID_B1 SINE B4 3 169 -55 3 1631 290 256 174 0 chr1 137115120 137115206 -60080226 + B1F SINE Alu 12 112 -37 3 1631 282 269 66 115 chr1 137115269 137115391 -60080041 + PB1D10 SINE Alu 1 116 -1 3 1631 367 125 28 0 chr1 137115399 137115471 -60079961 + (CAA)n Simple_repeat Simple_repeat 2 75 0 3 1631 1350 67 0 0 chr1 137115472 137115650 -60079782 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 3 1631 1387 85 5 5 chr1 137115797 137115987 -60079445 - B2_Mm2 SINE B2 -5 190 1 3 1631 982 131 7 0 chr1 137115990 137116135 -60079297 - B1_Mus1 SINE Alu 0 148 3 3 1631 773 191 60 138 chr1 137116135 137116353 -60079079 - B3 SINE B2 -15 201 1 3 1631 371 210 670 0 chr1 137116398 137116519 -60078913 + ID_B1 SINE B4 17 219 -5 3 1631 525 238 101 12 chr1 137116542 137116736 -60078696 + L1MB5 LINE L1 5864 6068 -111 3 1631 453 264 69 46 chr1 137116797 137116928 -60078504 + ID_B1 SINE B4 87 220 -4 3 1631 333 0 0 0 chr1 137116941 137116978 -60078454 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1631 913 234 57 0 chr1 137117040 137117249 -60078183 - ID_B1 SINE B4 -2 222 2 3 1631 1245 34 0 13 chr1 137117584 137117733 -60077699 + B1_Mm SINE Alu 1 147 0 3 1631 233 96 0 55 chr1 137117736 137117791 -60077641 + A-rich Low_complexity Low_complexity 1 52 0 3 1631 215 319 9 26 chr1 137117793 137117829 -60077603 - BC1_Mm scRNA scRNA -24 128 95 3 1631 885 219 0 163 chr1 137117829 137118010 -60077422 - B3 SINE B2 -6 210 31 3 1631 962 249 14 14 chr1 137118010 137118226 -60077206 + B3 SINE B2 1 216 0 3 1631 885 219 0 163 chr1 137118226 137118295 -60077137 - B3 SINE B2 -186 30 1 3 1631 242 289 14 4 chr1 137118295 137118374 -60077058 - ID4 SINE ID -58 94 15 3 1631 433 269 78 8 chr1 137118955 137119084 -60076348 - PB1D10 SINE Alu 0 149 12 3 1631 229 345 10 72 chr1 137119011 137119108 -60076324 - MT2B2 LTR ERVL -343 241 151 3 1631 1026 136 0 26 chr1 137119260 137119411 -60076021 + B1_Mus1 SINE Alu 1 147 -1 3 1631 1116 58 132 11 chr1 137119412 137119586 -60075846 + B2_Mm2 SINE B2 1 195 0 3 1631 1341 204 11 134 chr1 137119591 137119965 -60075467 - ORR1D1 LTR MaLR -42 332 5 3 1631 456 280 53 0 chr1 137119981 137120113 -60075319 - B1F SINE Alu -9 140 2 3 1631 1215 61 24 143 chr1 137120213 137120338 -60075094 + B2_Mm2 SINE B2 1 110 -85 3 1631 1148 83 7 0 chr1 137120338 137120483 -60074949 - B1_Mus2 SINE Alu 0 147 2 3 1631 1215 61 24 143 chr1 137120483 137120567 -60074865 + B2_Mm2 SINE B2 111 185 -10 3 1631 459 0 0 0 chr1 137120569 137120620 -60074812 + (CATA)n Simple_repeat Simple_repeat 4 54 0 3 1631 417 256 42 25 chr1 137120731 137120851 -60074581 + MIR SINE MIR 89 210 -52 3 1631 180 125 0 0 chr1 137120876 137120908 -60074524 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 3 1631 531 291 45 0 chr1 137121060 137121194 -60074238 + B1F SINE Alu 1 140 -9 3 1631 372 143 0 0 chr1 137121210 137121266 -60074166 + B1_Mur4 SINE Alu 1 56 -94 3 1631 681 228 117 21 chr1 137121267 137121455 -60073977 - ID_B1 SINE B4 -18 206 1 3 1631 854 104 19 13 chr1 137121480 137121635 -60073797 + (TCC)n Simple_repeat Simple_repeat 3 158 0 3 1631 288 370 0 0 chr1 137121656 137121756 -60073676 - ID_B1 SINE B4 -26 198 99 3 1631 377 211 41 115 chr1 137121756 137121922 -60073510 + MER34A LTR ERV1 397 561 -26 3 1631 923 228 38 19 chr1 137122307 137122517 -60072915 + B3 SINE B2 3 216 0 3 1631 285 315 32 70 chr1 137124644 137124801 -60070631 - L2a LINE L2 -1 3425 3275 3 1631 595 264 0 60 chr1 137124993 137125142 -60070290 - B1F SINE Alu 0 149 10 3 1631 254 307 31 16 chr1 137125457 137125586 -60069846 - L1MB3 LINE L1 -140 6043 5913 3 1631 1689 26 0 0 chr1 137125589 137125781 -60069651 + B2_Mm1t SINE B2 2 193 0 3 1631 449 258 0 0 chr1 137125806 137125895 -60069537 - B1_Mur2 SINE Alu -43 106 18 3 1631 999 228 30 0 chr1 137126003 137126200 -60069232 + ID_B1 SINE B4 1 203 -21 3 1631 917 125 28 0 chr1 137126280 137126424 -60069008 + B1_Mus1 SINE Alu 1 148 0 3 1631 526 277 234 17 chr1 137126451 137126690 -60068742 + B4 SINE B4 2 292 0 3 1631 312 331 55 47 chr1 137127101 137127228 -60068204 - MIR3 SINE MIR -52 156 29 3 1631 434 361 36 0 chr1 137127318 137127484 -60067948 + ID_B1 SINE B4 1 172 -52 3 1631 252 143 0 0 chr1 137127504 137127546 -60067886 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1631 287 324 104 61 chr1 137127546 137127661 -60067771 - PB1D7 SINE Alu 0 120 1 3 1631 293 300 0 0 chr1 137127612 137127672 -60067760 - B4A SINE B4 -158 134 75 3 1631 447 288 8 0 chr1 137127680 137127798 -60067634 + PB1D7 SINE Alu 1 119 -1 3 1631 786 212 7 7 chr1 137127913 137128060 -60067372 - B1_Mur2 SINE Alu -1 148 2 3 1631 183 80 0 0 chr1 137128069 137128094 -60067338 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1631 1086 44 89 0 chr1 137128094 137128229 -60067203 - B1_Mus1 SINE Alu 0 148 2 3 1631 23 0 0 0 chr1 137128238 137128261 -60067171 + AT_rich Low_complexity Low_complexity 1 23 0 3 1631 314 339 25 34 chr1 137128268 137128387 -60067045 - PB1 SINE Alu -9 118 1 3 1631 652 187 65 8 chr1 137128438 137128562 -60066870 - B1_Mur1 SINE Alu 0 149 19 3 1631 1168 68 7 0 chr1 137130078 137130225 -60065207 + B1_Mus1 SINE Alu 1 148 0 3 1631 672 264 101 58 chr1 137130292 137130569 -60064863 - B4A SINE B4 -2 290 2 3 1631 389 265 73 18 chr1 137130657 137130822 -60064610 - L1MB3 LINE L1 -88 6095 5922 3 1631 514 237 79 36 chr1 137130949 137131089 -60064343 + B1_Mur1 SINE Alu 3 148 -1 3 1631 540 0 0 0 chr1 137131807 137131867 -60063565 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1631 655 254 90 47 chr1 137131915 137132126 -60063306 - ID_B1 SINE B4 -4 220 1 3 1631 938 128 0 45 chr1 137132166 137132321 -60063111 + B1_Mur2 SINE Alu 1 148 -1 3 1631 270 283 0 0 chr1 137132558 137132611 -60062821 - B1F SINE Alu -95 54 2 3 1631 227 224 87 29 chr1 137132661 137132730 -60062702 - B2_Mm2 SINE B2 -18 177 105 3 1631 367 291 0 37 chr1 137132728 137132835 -60062597 - B1_Mm SINE Alu -35 112 10 3 1631 232 139 0 0 chr1 137132838 137132874 -60062558 - Lx7 LINE L1 -261 7435 7400 3 1631 1650 32 0 5 chr1 137132876 137133067 -60062365 + B2_Mm1a SINE B2 1 190 -3 3 1631 226 219 55 0 chr1 137133067 137133140 -60062292 + Lx9 LINE L1 7568 7644 0 3 1631 288 263 89 41 chr1 137133141 137133264 -60062168 - Lx7 LINE L1 -284 7412 7284 3 1631 189 107 0 0 chr1 137133269 137133297 -60062135 + (CTTG)n Simple_repeat Simple_repeat 4 31 0 3 1631 316 326 90 30 chr1 137133297 137133430 -60062002 - ID_B1 SINE B4 -1 223 83 3 1631 613 271 21 0 chr1 137133576 137133716 -60061716 - ID_B1 SINE B4 0 224 82 3 1631 864 184 0 0 chr1 137134354 137134684 -60060748 + (CA)n Simple_repeat Simple_repeat 1 330 0 3 1631 504 200 0 0 chr1 137134706 137134821 -60060611 + (CA)n Simple_repeat Simple_repeat 1 115 0 3 1631 225 0 0 0 chr1 137134879 137134904 -60060528 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1631 445 200 43 43 chr1 137134904 137134998 -60060434 - B1_Mur4 SINE Alu -6 144 51 3 1631 317 188 31 15 chr1 137135068 137135133 -60060299 - B1_Mur3 SINE Alu -83 66 1 3 1631 3750 193 34 16 chr1 137135187 137135898 -60059534 - Lx5 LINE L1 -12 7038 6315 3 1631 389 136 0 57 chr1 137135922 137135992 -60059440 - ID4 SINE ID -16 67 2 3 1631 452 277 0 25 chr1 137136507 137136629 -60058803 + ID_B1 SINE B4 106 224 0 3 1631 1149 52 0 0 chr1 137136678 137136812 -60058620 + B1_Mm SINE Alu 1 134 -13 3 1631 194 0 39 0 chr1 137136812 137136838 -60058594 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 3 1631 406 186 14 193 chr1 137137018 137137158 -60058274 + MT2B LTR ERVL 150 264 -337 3 1631 946 88 0 99 chr1 137137042 137137193 -60058239 + B1_Mus1 SINE Alu 13 148 0 3 1631 420 182 114 0 chr1 137137198 137137286 -60058146 - B1_Mur4 SINE Alu -5 145 48 3 1631 384 200 61 24 chr1 137137341 137137417 -60058015 + PB1D10 SINE Alu 1 79 -38 3 1631 925 217 69 0 chr1 137137417 137137592 -60057840 + B3A SINE B2 1 187 -11 4 1631 404 215 118 0 chr1 137137804 137137897 -60057535 - PB1 SINE Alu -2 125 22 4 1631 3221 26 42 5 chr1 137138377 137138759 -60056673 - MTA_Mm LTR MaLR 0 396 1 4 1631 9376 35 0 3 chr1 137138759 137139856 -60055576 - MTA_Mm-int LTR MaLR 0 1098 5 4 1631 266 248 77 10 chr1 137139912 137140012 -60055420 + B1F SINE Alu 1 144 -5 4 1631 436 221 123 19 chr1 137140018 137140124 -60055308 + PB1D10 SINE Alu 1 117 0 4 1631 648 196 111 15 chr1 137140131 137140266 -60055166 + B1_Mur1 SINE Alu 2 149 0 4 1631 225 293 13 26 chr1 137140273 137140350 -60055082 + GA-rich Low_complexity Low_complexity 4 79 0 4 1631 268 265 15 0 chr1 137140466 137140534 -60054898 - PB1D10 SINE Alu -40 77 9 4 1631 370 292 0 34 chr1 137140885 137141002 -60054430 - PB1D10 SINE Alu -1 116 4 4 1631 708 243 0 0 chr1 137141135 137141279 -60054153 - B1_Mur1 SINE Alu -4 145 2 4 1631 215 292 45 15 chr1 137141402 137141468 -60053964 - RSINE1 SINE B4 -12 153 86 4 1631 904 134 12 12 chr1 137141468 137141634 -60053798 + CT-rich Low_complexity Low_complexity 3 168 0 4 1631 357 24 0 0 chr1 137141665 137141707 -60053725 + (TATG)n Simple_repeat Simple_repeat 1 42 0 4 1631 331 221 57 55 chr1 137141830 137141937 -60053495 - PB1D7 SINE Alu -12 108 6 4 1631 1170 77 0 0 chr1 137141994 137142137 -60053295 + B1_Mus2 SINE Alu 2 144 -3 4 1631 334 161 30 198 chr1 137142164 137142265 -60053167 - B1F SINE Alu -1 148 65 4 1631 452 308 0 0 chr1 137142223 137142330 -60053102 - ID_B1 SINE B4 -11 213 107 4 1631 315 256 12 37 chr1 137142338 137142419 -60053013 - PB1D7 SINE Alu -32 88 10 4 1631 528 208 47 0 chr1 137142424 137142530 -60052902 - B1F SINE Alu -17 132 22 4 1631 225 0 0 0 chr1 137142531 137142556 -60052876 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1631 923 177 0 0 chr1 137142558 137142699 -60052733 - B1_Mur2 SINE Alu -8 141 1 4 1631 539 347 9 96 chr1 137142784 137142999 -60052433 + ID_B1 SINE B4 4 197 -27 4 1631 314 363 37 78 chr1 137143493 137143711 -60051721 + MER20 DNA MER1_type 1 209 -10 4 1631 253 297 16 0 chr1 137143796 137143860 -60051572 + B4A SINE B4 165 229 -63 4 1631 555 317 0 7 chr1 137143868 137144011 -60051421 + B1_Mur2 SINE Alu 7 148 -1 4 1631 187 203 0 33 chr1 137144228 137144289 -60051143 + CT-rich Low_complexity Low_complexity 1 59 0 4 1631 462 307 47 0 chr1 137144306 137144433 -60050999 - B1F2 SINE Alu -16 133 1 4 1631 286 244 280 25 chr1 137144439 137144557 -60050875 - B1F SINE Alu 0 149 2 4 1631 201 132 0 0 chr1 137144561 137144599 -60050833 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1631 407 172 121 129 chr1 137144606 137144746 -60050686 - B1F2 SINE Alu -6 143 5 4 1631 294 310 0 11 chr1 137144812 137144900 -60050532 + PB1D10 SINE Alu 3 89 -28 4 1631 292 257 24 96 chr1 137144900 137144931 -60050501 + ID_B1 SINE B4 94 193 -31 4 1631 180 182 136 0 chr1 137145610 137145654 -60049778 + MIR SINE MIR 35 84 -124 4 1631 930 65 0 16 chr1 137145770 137145896 -60049536 + B1_Mus1 SINE Alu 25 148 0 4 1631 771 197 7 0 chr1 137146117 137146254 -60049178 + B1_Mur3 SINE Alu 6 143 -6 4 1631 228 67 0 0 chr1 137146462 137146492 -60048940 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1631 212 193 17 17 chr1 137146585 137146643 -60048789 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1631 511 173 108 101 chr1 137146976 137147124 -60048308 + B1_Mur4 SINE Alu 1 149 -1 4 1631 358 262 87 70 chr1 137147697 137147812 -60047620 + B1F SINE Alu 33 149 0 4 1631 348 301 17 42 chr1 137147826 137147944 -60047488 + B1F SINE Alu 27 141 -8 4 1631 318 75 75 0 chr1 137148349 137148429 -60047003 + (TCTCTG)n Simple_repeat Simple_repeat 5 90 0 4 1631 409 120 0 157 chr1 137148436 137148525 -60046907 - B1_Mur4 SINE Alu -21 126 52 4 1631 1110 79 0 0 chr1 137148665 137148805 -60046627 + B1_Mur4 SINE Alu 5 144 -6 4 1631 234 0 0 0 chr1 137148831 137148857 -60046575 + (CTAAA)n Simple_repeat Simple_repeat 2 27 0 4 1631 479 175 124 0 chr1 137149029 137149126 -60046306 - B1_Mus2 SINE Alu -38 109 1 4 1631 334 258 9 85 chr1 137149288 137149394 -60046038 + PB1D9 SINE Alu 11 108 -12 4 1631 215 294 119 58 chr1 137149772 137149943 -60045489 - MIR3 SINE MIR -80 196 17 4 1631 429 20 0 0 chr1 137154524 137154574 -60040858 + (CCA)n Simple_repeat Simple_repeat 1 50 0 4 1631 272 326 0 31 chr1 137154578 137154676 -60040756 + PB1 SINE Alu 31 125 -2 4 1631 989 117 0 0 chr1 137155975 137156112 -60039320 + B1_Mus2 SINE Alu 11 147 0 4 1631 225 286 111 0 chr1 137156135 137156198 -60039234 - ID4_ SINE ID -9 74 5 4 1631 241 224 0 33 chr1 137156200 137156260 -60039172 - PB1D10 SINE Alu 0 117 60 4 1631 505 240 110 52 chr1 137156360 137156514 -60038918 + RSINE1 SINE B4 2 164 -1 4 1631 237 65 0 0 chr1 137156530 137156561 -60038871 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1631 708 189 68 0 chr1 137156571 137156703 -60038729 - B1_Mm SINE Alu -6 141 1 4 1631 282 290 13 121 chr1 137156728 137156877 -60038555 + MT2B LTR ERVL 153 285 -316 4 1631 556 212 58 50 chr1 137156750 137156878 -60038554 + B1_Mur1 SINE Alu 9 140 -9 4 1631 444 19 0 0 chr1 137156878 137156931 -60038501 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1631 227 284 112 31 chr1 137157147 137157168 -60038264 + PB1D9 SINE Alu 15 120 0 4 1631 288 219 39 52 chr1 137157168 137157245 -60038187 + ID_B1 SINE B4 147 222 -2 4 1631 930 88 29 0 chr1 137158196 137158333 -60037099 + B1_Mur3 SINE Alu 9 149 0 4 1631 357 243 111 59 chr1 137158893 137158923 -60036509 + ID_B1 SINE B4 63 222 -1 4 1631 500 221 123 0 chr1 137158923 137159045 -60036387 + B1F2 SINE Alu 13 149 0 4 1631 629 276 22 7 chr1 137159048 137159183 -60036249 + RSINE1 SINE B4 1 137 -28 4 1631 450 0 0 0 chr1 137159186 137159236 -60036196 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1631 922 211 27 22 chr1 137161188 137161372 -60034060 + B3A SINE B2 3 187 -11 4 1631 678 312 55 17 chr1 137162233 137162468 -60032964 + MIR SINE MIR 19 262 0 4 1631 271 279 69 69 chr1 137162824 137162955 -60032477 - B1F1 SINE Alu -1 148 18 4 1631 366 262 27 45 chr1 137162844 137162956 -60032476 - ID_B1 SINE B4 -17 207 98 4 1631 252 330 22 0 chr1 137162956 137163047 -60032385 - B1F1 SINE Alu -16 133 41 4 1631 336 400 5 48 chr1 137162984 137163173 -60032259 - ID_B1 SINE B4 -42 182 2 4 1631 292 273 30 0 chr1 137163230 137163296 -60032136 - ID4_ SINE ID -13 70 3 4 1631 642 212 20 33 chr1 137165106 137165257 -60030175 + B1_Mur1 SINE Alu 1 149 0 4 1631 348 373 19 0 chr1 137165312 137165470 -60029962 + RSINE1 SINE B4 2 162 -3 4 1631 257 232 157 12 chr1 137165472 137165555 -60029877 + MIR SINE MIR 62 156 -106 4 1631 276 200 29 58 chr1 137165562 137165631 -60029801 - B1F1 SINE Alu -18 129 63 4 1631 1502 42 21 5 chr1 137165666 137165855 -60029577 - B2_Mm2 SINE B2 -2 193 2 4 1631 395 287 16 50 chr1 137165859 137165980 -60029452 - PB1D10 SINE Alu 0 117 1 4 1631 294 147 0 0 chr1 137166132 137166200 -60029232 + (T)n Simple_repeat Simple_repeat 1 68 0 4 1631 1144 82 7 0 chr1 137166200 137166347 -60029085 - B1_Mus1 SINE Alu 0 148 1 4 1631 855 182 28 0 chr1 137166349 137166492 -60028940 - B1_Mur3 SINE Alu 0 149 3 4 1631 306 0 0 0 chr1 137166556 137166590 -60028842 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1631 755 211 146 0 chr1 137166601 137166772 -60028660 - ID_B1 SINE B4 -1 223 28 4 1631 21 0 0 0 chr1 137166941 137166962 -60028470 + AT_rich Low_complexity Low_complexity 1 21 0 4 1631 553 198 121 24 chr1 137167006 137167130 -60028302 + B1_Mur1 SINE Alu 13 148 -1 4 1631 279 270 17 152 chr1 137167185 137167303 -60028129 + B1F2 SINE Alu 38 139 -10 4 1631 277 287 35 133 chr1 137167376 137167549 -60027883 + B4 SINE B4 67 222 -70 4 1631 527 209 56 56 chr1 137167410 137167552 -60027880 + B1_Mur1 SINE Alu 6 147 -2 4 1631 1645 32 0 0 chr1 137167583 137167770 -60027662 + B2_Mm1a SINE B2 2 188 -5 4 1631 1065 191 19 0 chr1 137167779 137167988 -60027444 + B3 SINE B2 4 216 0 4 1631 297 241 218 41 chr1 137169312 137169336 -60026096 + B4A SINE B4 76 247 -44 4 1631 603 206 0 14 chr1 137169336 137169458 -60025974 + PB1D7 SINE Alu 14 129 -20 4 1631 536 236 79 24 chr1 137169540 137169666 -60025766 + B1_Mur2 SINE Alu 2 134 -15 4 1631 279 0 0 0 chr1 137169667 137169698 -60025734 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1631 985 70 173 25 chr1 137169735 137169897 -60025535 + B2_Mm2 SINE B2 1 186 -9 4 1631 396 0 0 0 chr1 137170274 137170318 -60025114 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1631 1629 74 0 5 chr1 137170544 137170762 -60024670 - Lx2 LINE L1 -6 6991 6775 4 1631 1040 86 36 0 chr1 137170763 137170902 -60024530 - Lx2 LINE L1 -355 6642 6499 4 1631 505 161 0 0 chr1 137171071 137171152 -60024280 + PB1D10 SINE Alu 22 102 -15 4 1631 267 31 0 0 chr1 137171152 137171184 -60024248 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 4 1631 403 156 117 43 chr1 137171184 137171196 -60024236 + PB1 SINE Alu 114 122 -5 4 1631 1400 46 81 0 chr1 137171609 137171769 -60023663 + B2_Mm1t SINE B2 1 160 -33 4 1631 243 0 0 0 chr1 137171769 137171796 -60023636 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1631 1400 46 81 0 chr1 137171796 137171809 -60023623 + B2_Mm1t SINE B2 161 186 -7 4 1631 683 226 13 25 chr1 137171823 137171836 -60023596 - ID_B1 SINE B4 -1 223 214 5 1631 294 29 0 0 chr1 137171836 137171871 -60023561 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1631 683 209 16 18 chr1 137171871 137172052 -60023380 - ID_B1 SINE B4 -11 213 2 5 1631 1529 58 16 5 chr1 137172109 137172301 -60023131 - B2_Mm2 SINE B2 0 195 2 5 1631 914 106 0 7 chr1 137172310 137172452 -60022980 + (TTTTC)n Simple_repeat Simple_repeat 3 143 0 5 1631 1231 49 0 0 chr1 137172457 137172601 -60022831 - B1_Mus2 SINE Alu -3 144 1 5 1631 539 178 45 27 chr1 137172723 137172833 -60022599 - PB1D9 SINE Alu 0 120 9 5 1631 378 200 13 13 chr1 137172982 137173058 -60022374 + ID4_ SINE ID 5 80 -3 5 1631 332 263 110 34 chr1 137173314 137173432 -60022000 - PB1 SINE Alu 0 127 1 5 1631 1233 68 102 0 chr1 137174204 137174380 -60021052 - B2_Mm2 SINE B2 -1 194 1 5 1631 530 243 80 7 chr1 137174384 137174521 -60020911 - B1F2 SINE Alu -1 148 2 5 1631 288 77 0 0 chr1 137174522 137174561 -60020871 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1631 598 205 131 0 chr1 137174707 137174829 -60020603 + B1_Mur1 SINE Alu 6 143 -6 5 1631 384 302 57 0 chr1 137174953 137175059 -60020373 - PB1D10 SINE Alu -5 112 1 5 1631 395 244 229 40 chr1 137175095 137175107 -60020325 - B3 SINE B2 -1 215 205 5 1631 237 33 0 0 chr1 137175107 137175137 -60020295 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1631 477 244 229 40 chr1 137175137 137175299 -60020133 - B3A SINE B2 -12 204 8 5 1631 1324 72 67 0 chr1 137176401 137176581 -60018851 + B2_Mm2 SINE B2 2 193 -2 5 1631 242 250 0 32 chr1 137176581 137176643 -60018789 - MER92A LTR ERV1 -290 122 63 5 1631 2379 186 21 87 chr1 137176723 137176985 -60018447 + RLTR31_Mm LTR ERVK 1 260 -301 5 1631 1298 117 0 0 chr1 137176985 137177165 -60018267 - B2_Mm2 SINE B2 -14 181 2 5 1631 2379 192 23 112 chr1 137177165 137177590 -60017842 + RLTR31_Mm LTR ERVK 209 584 0 5 1631 649 294 86 41 chr1 137177680 137177971 -60017461 + L1MC3 LINE L1 7168 7471 -314 5 1631 370 239 0 14 chr1 137178250 137178322 -60017110 - PB1D10 SINE Alu -46 71 1 5 1631 1208 61 0 0 chr1 137178733 137178880 -60016552 + B1_Mus1 SINE Alu 1 147 -1 5 1631 342 323 7 65 chr1 137178923 137179062 -60016370 + ID_B1 SINE B4 25 155 -69 5 1631 396 0 0 0 chr1 137181037 137181081 -60014351 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1631 754 172 171 37 chr1 137181204 137181391 -60014041 - B3 SINE B2 -4 212 1 5 1631 262 250 88 0 chr1 137181475 137181543 -60013889 - B1F SINE Alu -52 97 24 5 1631 319 293 0 12 chr1 137181559 137181642 -60013790 - ID4 SINE ID 0 83 2 5 1631 225 0 0 0 chr1 137181818 137181843 -60013589 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1631 1164 75 0 0 chr1 137181843 137181989 -60013443 - B1_Mm SINE Alu 0 147 2 5 1631 1577 47 16 0 chr1 137182079 137182270 -60013162 + B2_Mm2 SINE B2 2 195 0 5 1631 288 242 15 0 chr1 137182475 137182541 -60012891 - ID4 SINE ID -16 67 1 5 1631 455 204 0 104 chr1 137182555 137182670 -60012762 - PB1D9 SINE Alu -11 109 7 5 1631 287 264 10 108 chr1 137182585 137182687 -60012745 - MT2B LTR ERVL -356 245 154 5 1631 403 210 98 25 chr1 137182757 137182879 -60012553 + RLTR42-int LTR ERVK 1157 1287 -4235 5 1631 238 220 68 0 chr1 137183337 137183396 -60012036 + L1MC4a LINE L1 6735 6797 -1085 5 1631 1088 109 0 0 chr1 137183419 137183566 -60011866 - B1_Mus1 SINE Alu 0 148 2 5 1631 610 183 153 38 chr1 137184033 137184164 -60011268 + B1_Mus2 SINE Alu 1 146 -1 5 1631 422 230 0 0 chr1 137184223 137184310 -60011122 + RSINE1 SINE B4 39 125 -40 5 1631 427 235 147 19 chr1 137184370 137184526 -60010906 + L1MC4a LINE L1 6914 7089 -906 5 1631 296 85 0 0 chr1 137184530 137184577 -60010855 - B3 SINE B2 -3 213 167 5 1631 632 288 12 121 chr1 137184629 137185017 -60010415 + RLTR19B LTR ERVK 4 349 -366 5 1631 715 257 27 49 chr1 137185126 137185217 -60010215 + ID_B1 SINE B4 1 219 -4 5 1631 1072 60 0 0 chr1 137185217 137185350 -60010082 + B1_Mus1 SINE Alu 11 143 -5 5 1631 497 228 70 8 chr1 137185372 137185500 -60009932 + B3 SINE B2 80 215 -1 5 1631 293 275 126 30 chr1 137185513 137185526 -60009906 + B4A SINE B4 78 224 -67 5 1631 572 215 174 0 chr1 137185526 137185647 -60009785 + B1_Mur2 SINE Alu 6 147 -2 5 1631 1138 71 0 0 chr1 137185663 137185803 -60009629 + B1_Mm SINE Alu 1 140 -7 5 1631 209 33 33 0 chr1 137185816 137185846 -60009586 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1631 622 255 116 30 chr1 137185917 137186115 -60009317 + B3 SINE B2 1 215 -1 5 1631 658 212 76 38 chr1 137186132 137186289 -60009143 + B3 SINE B2 4 166 -50 5 1631 1925 114 54 97 chr1 137186291 137186661 -60008771 - ORR1B1 LTR MaLR 0 394 41 5 1631 284 160 0 0 chr1 137186667 137186717 -60008715 + B3 SINE B2 166 215 -1 5 1631 575 196 325 0 chr1 137186736 137186899 -60008533 - B3 SINE B2 0 216 1 5 1631 679 179 32 0 chr1 137186935 137187058 -60008374 - RMER6D LTR ERVK 0 720 594 5 1631 1015 225 55 91 chr1 137187093 137187371 -60008061 + RMER16 LTR ERVK 1 395 -138 5 1631 1340 98 5 35 chr1 137187371 137187572 -60007860 + B2_Mm2 SINE B2 1 195 0 5 1631 1015 227 72 108 chr1 137187572 137187709 -60007723 + RMER16 LTR ERVK 396 533 0 5 1631 2100 129 69 3 chr1 137187863 137188369 -60007063 + RLTR33 LTR ERVK 1 577 -101 5 1631 2362 172 83 40 chr1 137188369 137188872 -60006560 - RLTR11A LTR ERVK 0 528 4 5 1631 1733 182 114 3 chr1 137188872 137188951 -60006481 + RLTR33 LTR ERVK 578 675 -3 5 1631 2935 140 136 2 chr1 137188953 137189477 -60005955 - RMER6D LTR ERVK -110 610 17 5 1631 343 362 85 24 chr1 137189614 137189826 -60005606 + RLTR19 LTR ERVK 10 234 -265 5 1631 1601 211 242 13 chr1 137189799 137190187 -60005245 + RLTR33 LTR ERVK 202 678 0 5 1631 361 244 94 0 chr1 137190187 137190314 -60005118 + L1MC4a LINE L1 7732 7870 -12 5 1631 3077 155 77 160 chr1 137190330 137190492 -60004940 - MTC-int LTR MaLR -2 1256 1103 5 1631 1255 134 37 0 chr1 137190492 137190679 -60004753 - B2_Mm2 SINE B2 0 195 2 5 1631 3077 155 77 160 chr1 137190679 137190808 -60004624 - MTC-int LTR MaLR -156 1102 1053 5 1631 1216 49 7 0 chr1 137190808 137190952 -60004480 - B1_Mus2 SINE Alu 0 147 3 5 1631 3077 178 144 130 chr1 137190952 137191741 -60003691 - MTC-int LTR MaLR -206 1052 1 5 1631 2392 145 48 15 chr1 137191745 137192145 -60003287 - MTC LTR MaLR -8 413 1 5 1631 520 348 13 13 chr1 137192297 137192454 -60002978 - RSINE1 SINE B4 0 165 9 5 1631 255 246 16 16 chr1 137192627 137192689 -60002743 + PB1D7 SINE Alu 2 63 -57 5 1631 652 217 29 0 chr1 137193054 137193343 -60002089 + (TA)n Simple_repeat Simple_repeat 1 297 0 5 1631 673 152 127 15 chr1 137193344 137193478 -60001954 - B1_Mur4 SINE Alu -1 149 1 5 1631 543 31 0 0 chr1 137193525 137193590 -60001842 + (TATG)n Simple_repeat Simple_repeat 1 65 0 5 1631 385 337 76 87 chr1 137193592 137193677 -60001755 - B4 SINE B4 -6 286 199 5 1631 1415 84 21 5 chr1 137193677 137193868 -60001564 - B2_Mm2 SINE B2 -1 194 1 5 1631 385 337 76 87 chr1 137193868 137194071 -60001361 - B4 SINE B4 -94 198 1 5 1631 358 260 223 24 chr1 137194071 137194238 -60001194 - B4A SINE B4 -90 202 2 5 1631 378 218 26 0 chr1 137194605 137194683 -60000749 - ID_B1 SINE B4 -2 222 143 5 1631 279 203 261 8 chr1 137194683 137194724 -60000708 - B1F2 SINE Alu 0 149 1 5 1631 551 221 217 35 chr1 137194724 137194991 -60000441 - RLTR15 LTR ERVK -39 320 1 5 1631 295 290 14 0 chr1 137195010 137195079 -60000353 - ID_B1 SINE B4 -132 92 23 5 1631 21 0 0 0 chr1 137195262 137195283 -60000149 + AT_rich Low_complexity Low_complexity 1 21 0 5 1631 612 242 17 73 chr1 137195367 137195545 -59999887 + ID_B1 SINE B4 9 176 -48 5 1631 234 313 40 81 chr1 137195448 137195459 -59999973 - YREP_Mm Unknown Unknown -1496 316 293 5 1631 465 269 19 0 chr1 137195459 137195563 -59999869 + PB1D10 SINE Alu 10 115 -2 5 1631 234 313 40 81 chr1 137195563 137195622 -59999810 - YREP_Mm Unknown Unknown -1496 292 150 5 1631 233 33 0 0 chr1 137195797 137195827 -59999605 - B1_Mus2 SINE Alu -10 137 108 5 1631 1130 66 0 0 chr1 137195865 137196002 -59999430 - B1_Mus2 SINE Alu -10 137 1 5 1631 692 249 120 25 chr1 137196126 137196187 -59999245 + L1MA5 LINE L1 5430 5495 -679 5 1631 271 310 0 0 chr1 137196187 137196258 -59999174 + ID4_ SINE ID 2 72 -11 5 1631 692 247 106 28 chr1 137196258 137196636 -59998796 + L1MA5 LINE L1 5496 5918 -262 5 1631 2234 116 26 12 chr1 137196645 137196986 -59998446 + ORR1B1 LTR MaLR 41 386 -8 5 1631 320 260 124 10 chr1 137197078 137197175 -59998257 - B1_Mur4 SINE Alu -15 135 28 5 1631 329 203 0 0 chr1 137197587 137197646 -59997786 - PB1D7 SINE Alu -61 59 1 5 1631 532 141 111 0 chr1 137197793 137197910 -59997522 - PB1D9 SINE Alu 0 120 1 5 1631 402 252 35 35 chr1 137198833 137198948 -59996484 - PB1D10 SINE Alu -2 115 1 5 1631 655 242 18 54 chr1 137198948 137199032 -59996400 - ID SINE ID -145 79 2 5 1631 270 238 111 122 chr1 137199129 137199152 -59996280 - B2_Mm2 SINE B2 -8 187 169 5 1631 872 168 207 0 chr1 137199152 137199331 -59996101 - B3 SINE B2 0 216 1 5 1631 374 216 106 70 chr1 137199331 137199479 -59995953 - B3A SINE B2 -27 168 18 5 1631 653 288 21 5 chr1 137199490 137199682 -59995750 - B3A SINE B2 -3 195 1 5 1631 293 259 46 69 chr1 137199748 137199835 -59995597 - ID4 SINE ID -61 91 7 5 1631 244 281 0 17 chr1 137200014 137200070 -59995362 - ID_B1 SINE B4 -6 218 164 5 1631 254 156 32 0 chr1 137200070 137200120 -59995312 + MTC LTR MaLR 1 58 -361 5 1631 207 88 0 0 chr1 137200132 137200166 -59995266 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 5 1631 616 98 312 0 chr1 137200168 137200280 -59995152 + B1_Mus1 SINE Alu 2 148 0 5 1631 1274 69 0 133 chr1 137200373 137200591 -59994841 - B2_Mm2 SINE B2 -6 189 1 5 1631 593 238 66 43 chr1 137200611 137200822 -59994610 - B3 SINE B2 0 216 1 5 1631 562 200 100 0 chr1 137201278 137201408 -59994024 + ORR1D1 LTR MaLR 4 146 -228 5 1631 495 146 45 0 chr1 137201400 137201489 -59993943 + ORR1D1 LTR MaLR 282 374 0 5 1631 449 246 123 0 chr1 137201581 137201703 -59993729 + B1_Mur2 SINE Alu 6 142 -7 5 1631 435 284 113 0 chr1 137201753 137201894 -59993538 + RSINE1 SINE B4 3 159 -6 5 1631 293 219 27 14 chr1 137202158 137202232 -59993200 + ID_B1 SINE B4 97 171 -53 6 1631 699 210 0 0 chr1 137202382 137202501 -59992931 - B1_Mus2 SINE Alu -20 127 9 6 1631 733 250 27 37 chr1 137202985 137203172 -59992260 + B3A SINE B2 14 198 0 6 1631 1124 68 0 45 chr1 137203195 137203349 -59992083 + B1_Mus2 SINE Alu 1 147 0 6 1631 627 14 0 0 chr1 137203371 137203443 -59991989 + (GAAAA)n Simple_repeat Simple_repeat 1 72 0 6 1631 1843 169 51 99 chr1 137203443 137203790 -59991642 + RLTR16 LTR ERVK 74 412 -93 6 1631 261 0 0 0 chr1 137203790 137203819 -59991613 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1631 1843 169 51 99 chr1 137203819 137203925 -59991507 + RLTR16 LTR ERVK 413 505 0 6 1631 1215 156 0 0 chr1 137203948 137204134 -59991298 + URR1B DNA MER1_type 39 224 -1 6 1631 487 238 71 0 chr1 137204167 137204293 -59991139 + B3 SINE B2 82 216 0 6 1631 1269 142 69 0 chr1 137204619 137204819 -59990613 + MTC LTR MaLR 1 214 -207 6 1631 783 203 35 0 chr1 137204819 137204962 -59990470 + B1_Mur2 SINE Alu 2 149 0 6 1631 551 179 187 0 chr1 137204993 137205116 -59990316 + B1_Mus2 SINE Alu 2 147 0 6 1631 1454 141 18 9 chr1 137205122 137205344 -59990088 + MTC LTR MaLR 198 421 0 6 1631 1009 212 66 0 chr1 137205819 137206017 -59989415 + B3 SINE B2 1 211 -5 6 1631 704 145 41 33 chr1 137206019 137206140 -59989292 + B3 SINE B2 2 123 -93 6 1631 189 107 0 0 chr1 137206214 137206242 -59989190 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1631 1180 75 0 0 chr1 137206919 137207066 -59988366 + B1_Mus2 SINE Alu 1 147 0 6 1631 325 254 58 110 chr1 137207074 137207131 -59988301 + L1MDa LINE L1 2401 2444 -4189 6 1631 1244 48 0 0 chr1 137207131 137207278 -59988154 + B1_Mus2 SINE Alu 1 147 0 6 1631 325 254 58 110 chr1 137207278 137207375 -59988057 + L1MDa LINE L1 2445 2546 -4087 6 1631 288 0 0 0 chr1 137207571 137207603 -59987829 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1631 235 216 0 0 chr1 137208376 137208413 -59987019 + PB1D10 SINE Alu 71 107 -10 6 1631 25 0 0 0 chr1 137208490 137208515 -59986917 + AT_rich Low_complexity Low_complexity 1 25 0 6 1631 1221 41 7 0 chr1 137208528 137208674 -59986758 - B1_Mus1 SINE Alu 0 148 2 6 1631 240 297 104 47 chr1 137208741 137208914 -59986518 - MIR SINE MIR -68 194 17 6 1631 244 232 348 0 chr1 137209052 137209121 -59986311 - PB1D10 SINE Alu -10 107 15 6 1631 365 263 101 0 chr1 137209143 137209242 -59986190 - B1F2 SINE Alu -9 140 32 6 1631 239 250 92 35 chr1 137209171 137209258 -59986174 - MT2B LTR ERVL -344 257 166 6 1631 188 307 33 22 chr1 137209888 137209978 -59985454 - MIRm SINE MIR -104 172 82 6 1631 656 144 135 8 chr1 137210553 137210679 -59984753 - B1_Mus1 SINE Alu -5 143 2 6 1631 22 35 0 0 chr1 137210825 137210854 -59984578 + AT_rich Low_complexity Low_complexity 1 29 0 6 1631 252 300 17 0 chr1 137210905 137210965 -59984467 - RSINE1 SINE B4 -102 63 3 6 1631 438 20 0 0 chr1 137211180 137211231 -59984201 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1631 268 284 0 47 chr1 137211250 137211335 -59984097 + ID_B1 SINE B4 144 224 0 6 1631 184 0 30 61 chr1 137211422 137211434 -59983998 + (CAA)n Simple_repeat Simple_repeat 2 13 0 6 1631 1198 55 0 0 chr1 137211434 137211579 -59983853 + B1_Mus2 SINE Alu 2 146 -1 6 1631 184 0 30 61 chr1 137211579 137211599 -59983833 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1631 997 209 48 0 chr1 137211611 137211798 -59983634 + B3 SINE B2 1 196 -20 6 1631 23 0 0 0 chr1 137211799 137211822 -59983610 + AT_rich Low_complexity Low_complexity 1 23 0 6 1631 1155 57 0 0 chr1 137211914 137212054 -59983378 - B1_Mus1 SINE Alu -8 140 1 6 1631 244 312 8 76 chr1 137212144 137212262 -59983170 + MT2B LTR ERVL 155 264 -337 6 1631 405 238 159 0 chr1 137212156 137212282 -59983150 + ID_B1 SINE B4 79 224 0 6 1631 705 126 0 0 chr1 137212291 137212402 -59983030 + (GGGA)n Simple_repeat Simple_repeat 4 114 0 6 1631 585 259 74 34 chr1 137212427 137212575 -59982857 + RSINE1 SINE B4 6 159 -6 6 1631 252 0 0 0 chr1 137212635 137212663 -59982769 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1631 288 0 0 0 chr1 137212737 137212769 -59982663 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1631 233 0 62 0 chr1 137212889 137212921 -59982511 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1631 1185 44 0 0 chr1 137212921 137213058 -59982374 - B1_Mm SINE Alu -10 137 1 6 1631 565 272 21 123 chr1 137213522 137213593 -59981839 - MLT2B2 LTR ERVL -5 557 492 6 1631 806 30 10 0 chr1 137213593 137213694 -59981738 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 6 1631 565 272 21 123 chr1 137213694 137213865 -59981567 - MLT2B2 LTR ERVL -71 491 340 6 1631 407 274 9 9 chr1 137214221 137214328 -59981104 + PB1D10 SINE Alu 2 108 -9 6 1631 844 170 7 13 chr1 137214339 137214488 -59980944 + B1_Mur3 SINE Alu 1 148 -1 6 1631 231 310 42 14 chr1 137214493 137214565 -59980867 + B3A SINE B2 109 182 -16 6 1631 823 209 44 0 chr1 137214579 137214737 -59980695 + RSINE1 SINE B4 1 165 0 6 1631 240 111 0 0 chr1 137214764 137214800 -59980632 + (ATG)n Simple_repeat Simple_repeat 1 36 0 6 1631 303 303 0 0 chr1 137214804 137214880 -59980552 + ID4 SINE ID 2 77 -6 6 1631 337 321 163 7 chr1 137214990 137215131 -59980301 - MIR SINE MIR -98 164 2 6 1631 227 240 120 0 chr1 137215204 137215254 -59980178 + B1_Mur4 SINE Alu 11 66 -84 6 1631 796 172 38 34 chr1 137215263 137215451 -59979981 - B3 SINE B2 0 195 2 6 1631 506 51 152 0 chr1 137215479 137215558 -59979874 - B1_Mur4 SINE Alu 0 150 60 6 1631 401 153 111 0 chr1 137215555 137215627 -59979805 + B1_Mur1 SINE Alu 58 137 -12 6 1631 623 182 66 0 chr1 137215601 137215722 -59979710 - B1_Mur4 SINE Alu -16 134 6 6 1631 27 0 0 26 chr1 137215831 137215849 -59979583 + AT_rich Low_complexity Low_complexity 1 18 0 6 1631 1115 97 0 0 chr1 137215849 137215994 -59979438 - B1_Mus2 SINE Alu -2 145 1 6 1631 27 0 0 26 chr1 137215994 137216013 -59979419 + AT_rich Low_complexity Low_complexity 1 19 0 6 1631 584 14 14 0 chr1 137216099 137216172 -59979260 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1631 529 241 57 0 chr1 137216874 137217015 -59978417 + B1_Mur1 SINE Alu 1 149 0 6 1631 228 111 0 0 chr1 137217032 137217068 -59978364 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 6 1631 344 329 14 20 chr1 137217494 137217640 -59977792 + ID_B1 SINE B4 78 222 -2 6 1631 715 261 47 26 chr1 137217649 137217842 -59977590 + B3A SINE B2 2 198 0 6 1631 254 308 75 89 chr1 137217870 137218016 -59977416 + B4 SINE B4 81 224 -68 6 1631 731 171 47 0 chr1 137217889 137218018 -59977414 + B1_Mur1 SINE Alu 15 149 0 6 1631 340 169 13 13 chr1 137218018 137218046 -59977386 + polypurine Low_complexity Low_complexity 3 30 0 6 1631 1034 144 0 6 chr1 137218046 137218227 -59977205 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1631 340 169 13 13 chr1 137218227 137218276 -59977156 + polypurine Low_complexity Low_complexity 31 80 0 6 1631 762 230 0 7 chr1 137218289 137218429 -59977003 + B1_Mur1 SINE Alu 3 141 -8 6 1631 216 0 0 0 chr1 137218451 137218475 -59976957 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1631 289 267 0 0 chr1 137218510 137218570 -59976862 + ID2 SINE ID 2 61 -22 6 1631 548 195 212 28 chr1 137218614 137218793 -59976639 + B3 SINE B2 1 212 -4 6 1631 241 347 176 20 chr1 137219141 137219294 -59976138 - MIR SINE MIR -85 177 1 6 1631 666 150 13 164 chr1 137219343 137219502 -59975930 - B1_Mus2 SINE Alu -12 135 1 6 1631 802 272 55 70 chr1 137219607 137219919 -59975513 - ORR1E LTR MaLR -52 307 1 6 1631 531 0 0 0 chr1 137220764 137220823 -59974609 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1631 241 303 0 0 chr1 137222697 137222763 -59972669 - ID4 SINE ID -4 79 14 6 1631 326 202 101 0 chr1 137223324 137223423 -59972009 + MIRb SINE MIR 151 259 -9 6 1631 539 308 54 19 chr1 137223936 137224141 -59971291 - ID_B1 SINE B4 -1 223 12 6 1631 521 281 14 22 chr1 137224814 137224952 -59970480 - RSINE1 SINE B4 -13 152 16 6 1631 259 0 0 89 chr1 137225877 137225922 -59969510 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1631 1016 77 28 7 chr1 137225924 137226068 -59969364 + B1_Mus1 SINE Alu 1 147 -1 6 1631 185 0 40 0 chr1 137226070 137226095 -59969337 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1631 786 177 7 0 chr1 137226234 137226381 -59969051 + B1_Mur4 SINE Alu 2 149 -1 6 1631 471 87 0 0 chr1 137226864 137226933 -59968499 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1631 243 312 12 12 chr1 137227321 137227402 -59968030 + MIRb SINE MIR 125 205 -63 6 1631 238 272 155 0 chr1 137228558 137228661 -59966771 - L2a LINE L2 -2 3424 3306 6 1631 1894 188 9 72 chr1 137228694 137229123 -59966309 - MTD LTR MaLR -14 405 4 6 1631 349 278 6 89 chr1 137229108 137229135 -59966297 + ID_B1 SINE B4 77 97 -127 6 1631 564 15 0 0 chr1 137229135 137229200 -59966232 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1631 715 152 0 0 chr1 137229209 137229327 -59966105 + B1_Mur3 SINE Alu 26 143 -6 6 1631 795 200 128 0 chr1 137229346 137229526 -59965906 - B3 SINE B2 -12 204 2 6 1631 256 250 0 0 chr1 137229530 137229594 -59965838 - L2a LINE L2 -1098 2321 2258 6 1631 252 59 0 0 chr1 137229830 137229864 -59965568 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1631 429 20 0 0 chr1 137229864 137229913 -59965519 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1631 899 41 148 0 chr1 137229944 137230066 -59965366 + B1_Mus2 SINE Alu 2 141 -6 6 1631 180 0 0 0 chr1 137230067 137230087 -59965345 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 7 1631 231 36 0 0 chr1 137230087 137230114 -59965318 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1631 261 0 0 0 chr1 137231173 137231202 -59964230 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1631 806 96 40 0 chr1 137231203 137231328 -59964104 - B1_Mur3 SINE Alu -11 138 9 7 1631 443 284 77 6 chr1 137231345 137231515 -59963917 - L1M5 LINE L1 -355 5809 5628 7 1631 579 158 9 27 chr1 137231848 137231959 -59963473 + B1_Mur2 SINE Alu 41 149 0 7 1631 688 177 267 19 chr1 137231976 137232137 -59963295 + B3 SINE B2 1 201 -15 7 1631 1159 68 0 0 chr1 137232137 137232284 -59963148 - B1_Mus2 SINE Alu 0 147 1 7 1631 195 42 0 0 chr1 137232304 137232328 -59963104 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 203 321 208 14 0 chr1 137232334 137232408 -59963024 - B2_Mm2 SINE B2 -92 124 47 7 1632 1219 97 11 0 chr1 137232440 137232615 -59962817 - B2_Mm1t SINE B2 -14 179 3 7 1632 272 91 0 22 chr1 137232615 137232660 -59962772 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 7 1632 982 134 0 0 chr1 137233463 137233612 -59961820 - B1_Mur4 SINE Alu -1 149 1 7 1632 189 0 0 0 chr1 137233630 137233651 -59961781 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1632 839 184 201 0 chr1 137233671 137233845 -59961587 - B3 SINE B2 -7 209 1 7 1632 296 379 127 31 chr1 137234039 137234676 -59960756 + L2 LINE L2 2348 3045 -374 7 1632 750 114 52 29 chr1 137234758 137234894 -59960538 + B1_Mus1 SINE Alu 9 147 -1 7 1632 287 216 13 26 chr1 137235059 137235135 -59960297 + CT-rich Low_complexity Low_complexity 2 76 0 7 1632 255 305 68 30 chr1 137235162 137235294 -59960138 - RSINE1 SINE B4 0 165 29 7 1632 22 0 0 0 chr1 137235343 137235365 -59960067 + AT_rich Low_complexity Low_complexity 1 22 0 7 1632 462 260 150 0 chr1 137235381 137235508 -59959924 - RSINE1 SINE B4 -18 147 2 7 1632 775 197 7 0 chr1 137235580 137235727 -59959705 - B1_Mus1 SINE Alu 0 148 1 7 1632 457 283 28 35 chr1 137236490 137236633 -59958799 - ID_B1 SINE B4 0 224 83 7 1632 280 73 0 52 chr1 137236942 137237000 -59958432 + (TTTTTG)n Simple_repeat Simple_repeat 4 58 0 7 1632 887 62 132 0 chr1 137237000 137237129 -59958303 - B1_Mus2 SINE Alu 0 147 2 7 1632 325 380 0 15 chr1 137237179 137237310 -59958122 - MER105 DNA DNA -75 129 1 7 1632 189 0 0 0 chr1 137237606 137237627 -59957805 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 7 1632 398 248 26 9 chr1 137237627 137237741 -59957691 - PB1D9 SINE Alu -4 116 1 7 1632 679 167 87 0 chr1 137237744 137237870 -59957562 + B1_Mur1 SINE Alu 12 148 -1 7 1632 704 208 0 7 chr1 137237928 137238073 -59957359 + B1_Mus1 SINE Alu 4 147 -1 7 1632 261 0 0 0 chr1 137238095 137238124 -59957308 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1632 283 315 72 17 chr1 137238399 137238580 -59956852 - L1ME4a LINE L1 -202 5922 5732 7 1632 268 303 0 0 chr1 137239016 137239092 -59956340 + ID SINE ID 1 76 -148 7 1632 221 0 0 33 chr1 137239092 137239122 -59956310 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 7 1632 200 213 0 41 chr1 137239478 137239527 -59955905 - MIRc SINE MIR -128 140 94 7 1632 395 292 18 99 chr1 137239602 137239677 -59955755 - RSINE1 SINE B4 -6 159 83 7 1632 1307 77 5 21 chr1 137239677 137239864 -59955568 - B2_Mm1t SINE B2 -8 185 2 7 1632 395 292 18 99 chr1 137239864 137239959 -59955473 - RSINE1 SINE B4 -83 82 3 7 1632 282 29 0 0 chr1 137240454 137240489 -59954943 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1632 538 233 78 39 chr1 137240558 137240737 -59954695 + B4A SINE B4 22 207 -85 7 1632 662 271 58 41 chr1 137240729 137240757 -59954675 - ORR1D2 LTR MaLR -111 259 234 7 1632 402 21 0 0 chr1 137240757 137240804 -59954628 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1632 662 271 58 41 chr1 137240804 137241017 -59954415 - ORR1D2 LTR MaLR -137 233 14 7 1632 229 234 0 0 chr1 137241027 137241074 -59954358 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1632 368 238 29 103 chr1 137241212 137241348 -59954084 + MT2B LTR ERVL 153 278 -323 7 1632 724 217 14 0 chr1 137241235 137241373 -59954059 + B1_Mur4 SINE Alu 11 150 0 7 1632 824 122 0 0 chr1 137241393 137241516 -59953916 + B1_Mus1 SINE Alu 25 147 -1 7 1632 1193 41 0 0 chr1 137241563 137241709 -59953723 + B1_Mm SINE Alu 2 147 0 7 1632 21 36 0 0 chr1 137241709 137241737 -59953695 + AT_rich Low_complexity Low_complexity 1 28 0 7 1632 313 200 0 16 chr1 137241739 137241800 -59953632 + B1F SINE Alu 7 66 -83 7 1632 229 268 12 24 chr1 137241823 137241907 -59953525 + GA-rich Low_complexity Low_complexity 4 86 0 7 1632 311 167 0 0 chr1 137241987 137242041 -59953391 - L1MB7 LINE L1 -19 6165 6112 7 1632 306 233 27 0 chr1 137242041 137242114 -59953318 + ID4 SINE ID 2 76 -7 7 1632 286 222 346 0 chr1 137242261 137242342 -59953090 + RSINE1 SINE B4 42 150 -15 7 1632 561 105 0 0 chr1 137242366 137242461 -59952971 + (CTA)n Simple_repeat Simple_repeat 1 95 0 7 1632 698 260 171 26 chr1 137242473 137242856 -59952576 - L1MB7 LINE L1 -285 5899 5450 7 1632 313 270 53 93 chr1 137243236 137243387 -59952045 + B1F2 SINE Alu 5 149 0 7 1632 277 179 224 0 chr1 137243962 137244029 -59951403 - MER45A DNA Tip100 -1 177 96 7 1632 468 0 0 0 chr1 137244759 137244811 -59950621 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1632 454 282 55 0 chr1 137245171 137245281 -59950151 - PB1D10 SINE Alu 0 117 2 7 1632 697 199 129 10 chr1 137246379 137246572 -59948860 + B3 SINE B2 1 216 0 7 1632 495 0 0 0 chr1 137246603 137246658 -59948774 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 7 1632 1116 108 0 23 chr1 137246770 137246941 -59948491 + MURVY-LTR LTR ERV1 353 519 0 7 1632 260 271 58 17 chr1 137247128 137247248 -59948184 + RSINE1 SINE B4 35 159 -6 7 1632 204 200 0 0 chr1 137247587 137247632 -59947800 + GA-rich Low_complexity Low_complexity 6 50 0 7 1632 595 169 59 0 chr1 137247962 137248080 -59947352 - B1F2 SINE Alu -2 147 23 7 1632 2325 95 6 3 chr1 137248253 137248579 -59946853 + ORR1A2 LTR MaLR 1 327 0 7 1632 272 240 138 23 chr1 137249251 137249356 -59946076 + PB1D10 SINE Alu 5 115 -34 7 1632 744 227 71 15 chr1 137249635 137249832 -59945600 - B3 SINE B2 -6 210 3 7 1632 1499 43 5 0 chr1 137249884 137250069 -59945363 - B2_Mm1t SINE B2 -6 187 2 7 1632 1499 22 0 17 chr1 137250069 137250250 -59945182 - B2_Mm1a SINE B2 -14 179 2 7 1632 444 174 76 67 chr1 137250294 137250399 -59945033 - U6 snRNA snRNA -1 106 1 7 1632 373 297 55 55 chr1 137250436 137250600 -59944832 - RSINE1 SINE B4 -1 164 1 7 1632 955 84 42 0 chr1 137250626 137250769 -59944663 - B1_Mur4 SINE Alu 0 150 2 7 1632 500 273 0 24 chr1 137250842 137250966 -59944466 - ID_B1 SINE B4 -20 204 84 7 1632 298 284 0 0 chr1 137252049 137252130 -59943302 + ID4 SINE ID 2 82 -1 7 1632 623 185 152 33 chr1 137252627 137252811 -59942621 + ID_B1 SINE B4 1 206 -18 7 1632 314 45 23 0 chr1 137252927 137252971 -59942461 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1632 576 244 0 0 chr1 137253232 137253412 -59942020 + CT-rich Low_complexity Low_complexity 1 180 0 7 1632 994 93 7 0 chr1 137253433 137253572 -59941860 - B1_Mur3 SINE Alu -9 140 1 7 1632 225 0 0 0 chr1 137256810 137256835 -59938597 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1632 806 129 7 0 chr1 137257562 137257702 -59937730 + (TCC)n Simple_repeat Simple_repeat 1 141 0 7 1632 573 230 127 0 chr1 137257702 137257828 -59937604 - B1_Mur1 SINE Alu -6 143 2 7 1632 504 0 0 0 chr1 137258148 137258204 -59937228 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1632 364 289 62 50 chr1 137258364 137258524 -59936908 - RSINE1 SINE B4 -2 163 2 7 1632 893 140 22 0 chr1 137258585 137258721 -59936711 + B1_Mur2 SINE Alu 1 139 -10 7 1632 254 26 0 50 chr1 137258748 137258788 -59936644 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 7 1632 840 210 33 0 chr1 137258788 137258969 -59936463 + B3 SINE B2 29 215 -1 7 1632 211 211 0 50 chr1 137258974 137259034 -59936398 + T-rich Low_complexity Low_complexity 2 58 0 7 1632 401 143 2 2 chr1 137259041 137259111 -59936321 - B1_Mus1 SINE Alu -46 71 2 7 1632 585 140 90 0 chr1 137259139 137259239 -59936193 + B1_Mus1 SINE Alu 1 109 -39 7 1632 486 0 0 0 chr1 137259239 137259293 -59936139 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1632 545 215 115 0 chr1 137259297 137259427 -59936005 - B3 SINE B2 -8 208 64 7 1632 290 120 361 9 chr1 137259426 137259534 -59935898 - B2_Mm2 SINE B2 -3 192 47 7 1632 1132 78 72 0 chr1 137259585 137259752 -59935680 - B2_Mm1t SINE B2 -14 179 1 7 1632 243 140 333 0 chr1 137259754 137259811 -59935621 - B3 SINE B2 -139 77 2 7 1632 211 273 45 0 chr1 137263940 137264006 -59931426 + ID4_ SINE ID 5 73 -10 7 1632 212 184 0 0 chr1 137264093 137264131 -59931301 + T-rich Low_complexity Low_complexity 1 38 0 7 1632 520 225 99 0 chr1 137264642 137264753 -59930679 - B1_Mur1 SINE Alu -26 123 2 7 1632 222 37 0 0 chr1 137264802 137264829 -59930603 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1632 222 37 0 0 chr1 137266298 137266325 -59929107 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 7 1632 193 176 283 0 chr1 137267667 137267756 -59927676 - MIR SINE MIR -113 155 43 7 1632 549 0 0 0 chr1 137270367 137270428 -59925004 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 7 1632 273 57 0 0 chr1 137270429 137270464 -59924968 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1632 622 153 17 35 chr1 137270477 137270592 -59924840 - PB1D7 SINE Alu -7 113 1 8 1632 25 31 0 0 chr1 137271504 137271536 -59923896 + GC_rich Low_complexity Low_complexity 1 32 0 8 1632 1163 149 14 14 chr1 137272595 137272806 -59922626 - URR1B DNA MER1_type -2 223 13 8 1632 727 254 61 20 chr1 137273242 137273439 -59921993 - B3 SINE B2 -10 206 2 8 1632 1414 63 0 5 chr1 137274093 137274285 -59921147 - B2_Mm2 SINE B2 -1 194 4 8 1632 510 279 0 8 chr1 137274342 137274465 -59920967 - RSINE1 SINE B4 -41 124 3 8 1632 658 176 88 0 chr1 137274506 137274631 -59920801 - B1_Mur1 SINE Alu -13 136 1 8 1632 415 326 67 26 chr1 137275594 137275789 -59919643 - MIR SINE MIR -46 216 14 8 1632 661 189 7 70 chr1 137276042 137276184 -59919248 - B1_Mus1 SINE Alu 0 148 16 8 1632 23 0 0 0 chr1 137276193 137276216 -59919216 + AT_rich Low_complexity Low_complexity 1 23 0 8 1632 180 0 0 0 chr1 137276625 137276645 -59918787 + (TGG)n Simple_repeat Simple_repeat 2 21 0 8 1632 226 321 25 0 chr1 137277629 137277640 -59917792 - ID4 SINE ID 0 83 46 8 1632 226 267 17 0 chr1 137277640 137277700 -59917732 - tRNA-Ala-GCY_ tRNA tRNA -10 65 5 8 1632 349 277 30 0 chr1 137277717 137277818 -59917614 - PB1D9 SINE Alu -1 119 16 8 1632 1195 55 0 0 chr1 137277834 137277979 -59917453 - B1_Mus2 SINE Alu 0 147 3 8 1632 1333 102 11 0 chr1 137278241 137278427 -59917005 + B2_Mm1t SINE B2 3 190 -3 8 1632 290 243 149 0 chr1 137278691 137278798 -59916634 - ID_B1 SINE B4 -13 211 89 8 1632 422 233 67 0 chr1 137278708 137278798 -59916634 - B1_Mm SINE Alu -44 103 8 8 1632 368 226 18 62 chr1 137278798 137278817 -59916615 - MT2B LTR ERVL -339 258 155 8 1632 219 161 143 0 chr1 137280820 137280876 -59914556 - ID4 SINE ID -2 81 18 8 1632 21 36 0 0 chr1 137281241 137281269 -59914163 + AT_rich Low_complexity Low_complexity 1 28 0 8 1632 210 91 0 0 chr1 137282845 137282878 -59912554 + (TCC)n Simple_repeat Simple_repeat 1 33 0 8 1632 510 197 35 135 chr1 137284214 137284242 -59911190 + B4 SINE B4 69 79 -213 8 1632 1053 75 0 0 chr1 137284242 137284389 -59911043 + B1_Mus1 SINE Alu 2 148 0 8 1632 444 226 0 0 chr1 137284546 137284639 -59910793 + BC1_Mm scRNA scRNA 1 93 -59 8 1632 613 214 32 0 chr1 137284676 137284802 -59910630 - B1_Mur4 SINE Alu -20 130 1 8 1632 811 161 28 14 chr1 137285349 137285494 -59909938 + B1_Mur1 SINE Alu 3 149 0 8 1632 736 200 160 6 chr1 137285519 137285700 -59909732 + B3 SINE B2 2 210 -6 8 1632 1006 46 0 0 chr1 137286375 137286506 -59908926 + B1_Mus1 SINE Alu 18 148 0 8 1632 493 198 9 70 chr1 137287598 137287712 -59907720 + PB1D9 SINE Alu 3 109 -11 8 1632 731 175 8 0 chr1 137287759 137287896 -59907536 - B1_Mus1 SINE Alu -5 143 5 8 1632 1178 62 68 0 chr1 137288595 137288771 -59906661 + B2_Mm2 SINE B2 8 195 0 8 1632 606 159 0 0 chr1 137288795 137288902 -59906530 + GA-rich Low_complexity Low_complexity 3 109 0 8 1632 797 79 0 9 chr1 137288902 137289017 -59906415 + (GAGAA)n Simple_repeat Simple_repeat 3 116 0 8 1632 857 172 0 7 chr1 137289018 137289164 -59906268 + B1_Mur4 SINE Alu 6 150 0 8 1632 21 0 0 0 chr1 137289213 137289234 -59906198 + AT_rich Low_complexity Low_complexity 1 21 0 8 1632 225 173 38 19 chr1 137289239 137289292 -59906140 - B3 SINE B2 0 216 163 8 1632 256 274 198 10 chr1 137289524 137289620 -59905812 - PB1D10 SINE Alu -3 114 1 8 1632 326 257 14 0 chr1 137290440 137290514 -59904918 - ID4 SINE ID 0 83 9 8 1632 250 271 0 41 chr1 137291132 137291205 -59904227 - ID4 SINE ID -11 72 3 8 1632 316 298 12 0 chr1 137291336 137291420 -59904012 + RSINE1 SINE B4 5 89 -76 8 1632 347 167 35 35 chr1 137291440 137291527 -59903905 + B1_Mur3 SINE Alu 63 149 0 8 1632 264 59 0 0 chr1 137291538 137291572 -59903860 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 8 1632 1347 72 38 16 chr1 137291652 137291835 -59903597 - B2_Mm2 SINE B2 -7 188 2 8 1632 1276 106 21 5 chr1 137291952 137292142 -59903290 - B2_Mm2 SINE B2 -2 193 1 8 1632 271 119 68 95 chr1 137292365 137292439 -59902993 - B1F2 SINE Alu -67 82 11 8 1632 316 298 55 1 chr1 137292692 137292798 -59902634 - B3 SINE B2 -6 192 80 8 1632 276 30 0 0 chr1 137292826 137292859 -59902573 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1632 490 195 210 11 chr1 137293253 137293429 -59902003 + B3 SINE B2 2 212 -4 8 1632 1670 32 0 0 chr1 137293438 137293627 -59901805 + B2_Mm1a SINE B2 1 189 -4 8 1632 382 274 19 19 chr1 137293827 137293935 -59901497 + B3 SINE B2 1 108 -108 8 1632 789 198 64 108 chr1 137294134 137294338 -59901094 - B3A SINE B2 -1 197 3 8 1632 21 36 0 0 chr1 137294347 137294375 -59901057 + AT_rich Low_complexity Low_complexity 1 28 0 8 1632 578 249 56 51 chr1 137294429 137294645 -59900787 - B4A SINE B4 -75 217 1 8 1632 210 158 0 0 chr1 137294717 137294747 -59900685 + T-rich Low_complexity Low_complexity 28 57 0 8 1632 1101 75 14 0 chr1 137294747 137294893 -59900539 - B1_Mus1 SINE Alu 0 148 1 8 1632 210 158 0 0 chr1 137294893 137294919 -59900513 + T-rich Low_complexity Low_complexity 2 27 0 8 1632 347 282 82 44 chr1 137295220 137295249 -59900183 - B2_Mm1a SINE B2 -4 189 159 8 1632 189 74 0 0 chr1 137295249 137295276 -59900156 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 8 1632 684 217 11 19 chr1 137295276 137295428 -59900004 - B3A SINE B2 -35 158 1 8 1632 1049 213 29 0 chr1 137295929 137296136 -59899296 + B3 SINE B2 2 214 -2 8 1632 1446 74 5 5 chr1 137297446 137297637 -59897795 + B2_Mm1a SINE B2 1 191 -2 8 1632 1105 43 21 7 chr1 137297650 137297791 -59897641 + B1_Mus2 SINE Alu 5 147 0 8 1632 275 354 0 10 chr1 137297998 137298098 -59897334 + Charlie1 DNA MER1_type 104 202 -2579 8 1632 394 325 42 42 chr1 137298128 137298295 -59897137 - B3 SINE B2 0 216 50 8 1632 556 148 16 0 chr1 137298320 137298442 -59896990 + GA-rich Low_complexity Low_complexity 1 124 0 8 1632 429 300 86 40 chr1 137298447 137298725 -59896707 + B4A SINE B4 2 292 0 8 1632 22 56 0 0 chr1 137299057 137299093 -59896339 + AT_rich Low_complexity Low_complexity 1 36 0 8 1632 415 87 29 0 chr1 137299120 137299189 -59896243 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 8 1632 228 135 0 0 chr1 137299190 137299227 -59896205 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 8 1632 401 335 40 13 chr1 137299233 137299384 -59896048 - RSINE1 SINE B4 -8 157 3 8 1632 807 93 78 0 chr1 137299411 137299540 -59895892 - B2_Mm2 SINE B2 -56 139 1 8 1632 477 273 67 15 chr1 137299549 137299683 -59895749 - ID_B1 SINE B4 -6 218 78 8 1632 241 301 0 24 chr1 137300277 137300362 -59895070 - ID4 SINE ID 0 83 1 8 1632 453 139 0 0 chr1 137300960 137301032 -59894400 - PB1D9 SINE Alu -1 119 48 8 1632 195 42 0 0 chr1 137301248 137301272 -59894160 + (TTTCC)n Simple_repeat Simple_repeat 3 26 0 8 1632 711 159 40 0 chr1 137301272 137301398 -59894034 - B1_Mur4 SINE Alu -11 139 9 8 1632 285 311 75 82 chr1 137301398 137301419 -59894013 - B4 SINE B4 -77 215 70 8 1632 479 252 42 0 chr1 137301437 137301556 -59893876 - RSINE1 SINE B4 -31 134 11 8 1632 431 192 30 12 chr1 137301731 137301842 -59893590 - B1_Mus2 SINE Alu 0 117 1 8 1632 1694 31 0 0 chr1 137303727 137303919 -59891513 - B2_Mm1t SINE B2 0 193 2 8 1632 253 288 0 0 chr1 137304180 137304239 -59891193 + ID4_ SINE ID 5 63 -20 8 1632 212 100 25 0 chr1 137304310 137304350 -59891082 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 8 1632 756 167 8 0 chr1 137304827 137304953 -59890479 + B1_Mur4 SINE Alu 11 137 -13 8 1632 192 40 0 0 chr1 137304970 137304995 -59890437 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1632 303 28 0 0 chr1 137304995 137305030 -59890402 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1632 435 261 8 25 chr1 137305076 137305194 -59890238 - PB1D9 SINE Alu 0 120 5 8 1632 1175 41 0 39 chr1 137305488 137305641 -59889791 + B1_Mus1 SINE Alu 2 148 0 8 1632 902 109 14 21 chr1 137306427 137306567 -59888865 + B1_Mur2 SINE Alu 5 143 -6 8 1632 233 57 29 0 chr1 137306567 137306602 -59888830 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 8 1632 364 286 33 16 chr1 137307425 137307546 -59887886 + PB1 SINE Alu 3 125 -2 8 1632 684 182 25 0 chr1 137308325 137308446 -59886986 - B1_Mus2 SINE Alu -20 127 4 8 1632 557 306 35 23 chr1 137308666 137308840 -59886592 - B3A SINE B2 -2 196 21 8 1632 763 135 157 18 chr1 137308875 137309041 -59886391 - B3 SINE B2 -27 189 1 8 1632 855 156 7 26 chr1 137310039 137310190 -59885242 - B1_Mur4 SINE Alu -2 148 1 8 1632 1306 225 128 0 chr1 137310328 137310657 -59884775 - MTD LTR MaLR -2 417 47 8 1632 501 288 90 60 chr1 137310664 137311153 -59884279 + L1M2 LINE L1 2304 2880 -3669 8 1632 325 292 51 27 chr1 137311156 137311331 -59884101 + Lx8 LINE L1 5804 5972 -1724 8 1632 244 186 202 50 chr1 137311449 137311469 -59883963 + MT2B LTR ERVL 151 216 -385 8 1632 322 52 162 48 chr1 137311469 137311549 -59883883 + B1_Mus2 SINE Alu 1 75 -72 8 1632 244 186 202 50 chr1 137311549 137311568 -59883864 + MT2B LTR ERVL 217 287 -314 8 1632 916 32 57 0 chr1 137311554 137311678 -59883754 + B1_Mus2 SINE Alu 17 147 0 8 1632 360 211 0 0 chr1 137311710 137311781 -59883651 + B3A SINE B2 1 71 -127 9 1632 899 225 132 15 chr1 137311781 137312171 -59883261 + Lx8 LINE L1 6640 7109 -364 8 1632 373 271 56 31 chr1 137312197 137312357 -59883075 + Lx8 LINE L1 7306 7469 -4 8 1632 433 126 189 0 chr1 137312391 137312486 -59882946 + B1_Mus2 SINE Alu 14 126 -21 9 1632 216 97 0 0 chr1 137312616 137312647 -59882785 + (TTA)n Simple_repeat Simple_repeat 2 32 0 9 1632 699 283 0 59 chr1 137312683 137312723 -59882709 - B3A SINE B2 -7 191 154 9 1632 2919 156 67 25 chr1 137312723 137313275 -59882157 + RMER15 LTR ERVL 1 575 0 9 1632 699 283 0 59 chr1 137313275 137313437 -59881995 - B3A SINE B2 -45 153 1 9 1632 726 207 67 21 chr1 137313446 137313622 -59881810 - B3A SINE B2 -8 187 4 9 1632 818 230 21 11 chr1 137314078 137314267 -59881165 - B3A SINE B2 -7 191 1 9 1632 353 204 80 0 chr1 137314360 137314458 -59880974 - B3 SINE B2 -87 111 2 9 1632 522 214 70 26 chr1 137314467 137314582 -59880850 - PB1D9 SINE Alu 0 120 1 9 1632 1295 189 207 19 chr1 137314866 137315189 -59880243 + ORR1C2 LTR MaLR 1 384 0 9 1632 1296 108 0 0 chr1 137315412 137315588 -59879844 + B2_Mm2 SINE B2 1 176 -19 9 1632 222 303 64 41 chr1 137316234 137316406 -59879026 - MIRb SINE MIR -48 220 45 9 1632 273 272 136 0 chr1 137317192 137317273 -59878159 - PB1D10 SINE Alu -13 104 13 9 1632 1322 74 17 0 chr1 137317394 137317570 -59877862 + B2_Mm1t SINE B2 1 179 -14 9 1632 302 98 330 9 chr1 137317609 137317721 -59877711 + B2_Mm2 SINE B2 47 194 -1 9 1632 1421 79 21 0 chr1 137317731 137317921 -59877511 + B2_Mm2 SINE B2 2 195 0 9 1632 389 255 19 19 chr1 137318059 137318163 -59877269 - PB1D9 SINE Alu -5 115 12 9 1632 30 27 0 0 chr1 137318262 137318299 -59877133 + AT_rich Low_complexity Low_complexity 1 37 0 9 1632 469 216 0 75 chr1 137318299 137318419 -59877013 - PB1D9 SINE Alu -7 113 3 9 1632 563 279 30 60 chr1 137318454 137318650 -59876782 - B3A SINE B2 -24 192 3 9 1632 696 130 32 16 chr1 137319194 137319319 -59876113 + B1_Mus2 SINE Alu 1 127 -20 9 1632 436 243 74 9 chr1 137319348 137319456 -59875976 - PB1D7 SINE Alu -3 117 3 9 1632 346 312 28 0 chr1 137319466 137319575 -59875857 - PB1D10 SINE Alu 0 117 6 9 1632 319 347 75 15 chr1 137319739 137319938 -59875494 - L1M5 LINE L1 -1306 4840 4630 9 1632 1069 190 14 24 chr1 137320006 137320216 -59875216 + B3 SINE B2 3 210 -6 9 1632 736 118 15 45 chr1 137320309 137320442 -59874990 - B1_Mur4 SINE Alu -21 129 1 9 1632 517 127 250 18 chr1 137320916 137321028 -59874404 - B1_Mur2 SINE Alu -7 142 5 9 1632 405 333 31 0 chr1 137321121 137321250 -59874182 + RSINE1 SINE B4 12 144 -21 9 1632 207 0 0 0 chr1 137322372 137322395 -59873037 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1632 414 207 0 47 chr1 137323825 137323911 -59871521 + ID4_ SINE ID 2 83 0 9 1632 207 176 0 0 chr1 137323914 137323948 -59871484 + A-rich Low_complexity Low_complexity 4 37 0 9 1632 461 154 0 11 chr1 137324246 137324338 -59871094 + GA-rich Low_complexity Low_complexity 1 91 0 9 1632 387 290 81 0 chr1 137327313 137327437 -59867995 + RMER1A Other Other 126 259 -771 9 1632 22 0 0 0 chr1 137327786 137327808 -59867624 + AT_rich Low_complexity Low_complexity 1 22 0 9 1632 600 247 0 52 chr1 137327822 137327976 -59867456 - ID_B1 SINE B4 0 224 79 9 1632 3724 202 93 40 chr1 137328080 137329479 -59865953 + RMER1B Other Other 35 1057 -9 9 1632 378 0 0 0 chr1 137329485 137329527 -59865905 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1632 331 248 134 37 chr1 137329531 137329665 -59865767 - RSINE1 SINE B4 -5 160 14 9 1632 1268 127 93 0 chr1 137330304 137330509 -59864923 - URR1A DNA MER1_type -2 224 1 9 1632 1102 258 128 9 chr1 137330596 137330932 -59864500 + MTD LTR MaLR 6 381 -38 9 1632 24 0 0 0 chr1 137332380 137332404 -59863028 + AT_rich Low_complexity Low_complexity 1 24 0 9 1632 266 358 78 28 chr1 137332995 137333136 -59862296 - MER5A DNA MER1_type -22 167 20 9 1632 252 0 0 0 chr1 137333295 137333323 -59862109 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1632 1152 89 7 0 chr1 137333342 137333488 -59861944 - B1_Mus2 SINE Alu 0 147 1 9 1632 241 319 14 14 chr1 137333939 137334009 -59861423 + ID4_ SINE ID 3 72 -11 9 1632 211 380 11 11 chr1 137336693 137336786 -59858646 + L2c LINE L2 3295 3387 0 9 1632 26 30 0 0 chr1 137337396 137337429 -59858003 + AT_rich Low_complexity Low_complexity 1 33 0 9 1632 216 0 0 0 chr1 137337686 137337710 -59857722 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1632 368 20 20 0 chr1 137338415 137338464 -59856968 + (CAACC)n Simple_repeat Simple_repeat 2 51 0 9 1632 231 202 95 0 chr1 137339205 137339289 -59856143 - L1M LINE L1 -813 5429 5338 9 1632 396 0 0 0 chr1 137339360 137339404 -59856028 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1632 415 270 181 7 chr1 137339422 137339560 -59855872 - RSINE1 SINE B4 -3 162 1 9 1632 472 254 119 65 chr1 137339764 137339949 -59855483 - B3A SINE B2 -1 197 3 9 1632 356 169 0 170 chr1 137340629 137340654 -59854778 - B1_Mur2 SINE Alu -4 145 127 9 1632 378 0 0 0 chr1 137340654 137340696 -59854736 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 9 1632 356 169 0 161 chr1 137340696 137340781 -59854651 - B1_Mur2 SINE Alu -23 126 60 9 1632 253 315 32 63 chr1 137340834 137340929 -59854503 - B1F1 SINE Alu -53 96 5 9 1632 194 33 67 0 chr1 137340949 137340979 -59854453 + (TTAG)n Simple_repeat Simple_repeat 1 32 0 9 1632 295 304 0 0 chr1 137340982 137341051 -59854381 - ID4 SINE ID -13 70 2 9 1632 26 30 0 0 chr1 137341051 137341084 -59854348 + AT_rich Low_complexity Low_complexity 1 33 0 9 1632 575 269 192 50 chr1 137341434 137341892 -59853540 - L1MA8 LINE L1 -27 6264 5742 9 1632 965 102 7 35 chr1 137342001 137342143 -59853289 - B1_Mus1 SINE Alu -10 138 1 9 1632 22 70 0 0 chr1 137342184 137342227 -59853205 + AT_rich Low_complexity Low_complexity 1 43 0 9 1632 188 306 0 0 chr1 137342333 137342382 -59853050 - MIR3 SINE MIR -1 207 159 9 1632 1484 254 103 32 chr1 137342385 137342667 -59852765 + L1MA6 LINE L1 5298 5610 -690 9 1632 2837 44 12 3 chr1 137342667 137343010 -59852422 - ORR1A1 LTR MaLR 0 346 1 9 1632 13576 44 48 2 chr1 137343010 137344722 -59850710 - ORR1A1-int LTR MaLR 0 1792 2 9 1632 2883 50 9 0 chr1 137344722 137345064 -59850368 - ORR1A1 LTR MaLR 0 346 1 9 1632 1484 254 103 32 chr1 137345064 137345429 -59850003 + L1MA6 LINE L1 5611 5991 -309 9 1632 1552 38 0 11 chr1 137345899 137346087 -59849345 - B2_Mm1a SINE B2 -6 187 2 9 1632 308 200 0 0 chr1 137346101 137346151 -59849281 - tRNA-Ala-GCA tRNA tRNA -21 54 5 9 1632 340 308 24 64 chr1 137346192 137346317 -59849115 - PB1 SINE Alu -7 120 1 9 1632 377 227 0 0 chr1 137347668 137347756 -59847676 + RMER12 LTR ERVK 758 845 -477 9 1632 351 0 0 0 chr1 137347756 137347795 -59847637 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 9 1632 465 141 0 0 chr1 137347796 137347860 -59847572 - ID4_ SINE ID -6 77 14 9 1632 337 307 26 9 chr1 137348258 137348373 -59847059 + PB1D10 SINE Alu 1 117 0 9 1632 383 300 0 0 chr1 137348375 137348455 -59846977 + ID SINE ID 1 80 -144 9 1632 285 206 73 0 chr1 137348473 137348541 -59846891 + PB1D10 SINE Alu 40 112 -5 9 1632 214 322 13 53 chr1 137348542 137348693 -59846739 + GA-rich Low_complexity Low_complexity 2 146 0 9 1632 434 206 10 30 chr1 137350001 137350101 -59845331 + ID_B1 SINE B4 113 210 -14 9 1632 1286 78 44 11 chr1 137350139 137350316 -59845116 + B2_Mm2 SINE B2 2 185 -10 9 1632 207 0 0 0 chr1 137350316 137350339 -59845093 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1632 581 310 70 0 chr1 137350409 137350567 -59844865 - Tigger5 DNA MER2_type -2194 212 44 9 1632 703 230 0 0 chr1 137352372 137352507 -59842925 - ID_B1 SINE B4 -3 221 87 9 1632 285 274 52 92 chr1 137352378 137352551 -59842881 - MT2B LTR ERVL -316 285 120 9 1632 282 73 0 0 chr1 137352708 137352749 -59842683 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1632 495 261 46 63 chr1 137353545 137353642 -59841790 - B4 SINE B4 -13 279 57 9 1632 571 180 10 10 chr1 137353642 137353743 -59841689 - B1F SINE Alu -42 107 7 9 1632 192 77 0 0 chr1 137354332 137354358 -59841074 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1632 226 159 23 0 chr1 137354482 137354526 -59840906 + A-rich Low_complexity Low_complexity 4 48 0 9 1632 189 0 0 0 chr1 137354526 137354547 -59840885 + (CAG)n Simple_repeat Simple_repeat 2 22 0 9 1632 276 340 19 39 chr1 137355487 137355591 -59839841 - L2c LINE L2 -2 3385 3284 9 1632 1098 98 0 0 chr1 137355594 137355737 -59839695 + B1_Mus2 SINE Alu 1 143 -4 9 1632 343 219 71 24 chr1 137355764 137355848 -59839584 + PB1D10 SINE Alu 30 117 0 9 1632 252 0 0 0 chr1 137355977 137356005 -59839427 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 9 1632 468 250 12 0 chr1 137356009 137356113 -59839319 - B1F SINE Alu -9 111 6 9 1632 389 268 0 0 chr1 137356138 137356220 -59839212 - B1F SINE Alu 0 149 68 9 1632 225 158 16 66 chr1 137356386 137356447 -59838985 + GA-rich Low_complexity Low_complexity 1 58 0 9 1632 23 33 0 0 chr1 137356491 137356521 -59838911 + AT_rich Low_complexity Low_complexity 1 30 0 9 1632 227 298 84 11 chr1 137356539 137356634 -59838798 + PB1D10 SINE Alu 1 102 -15 9 1632 414 230 29 39 chr1 137358406 137358510 -59836922 - PB1D10 SINE Alu -9 108 6 9 1632 195 162 0 0 chr1 137362321 137362358 -59833074 + (TGG)n Simple_repeat Simple_repeat 3 39 0 9 1632 205 310 0 0 chr1 137362588 137362646 -59832786 + GA-rich Low_complexity Low_complexity 2 59 0 9 1632 211 337 11 34 chr1 137363254 137363343 -59832089 - L3b LINE CR1 -209 273 187 9 1633 2044 148 53 6 chr1 137364759 137365098 -59830334 + ORR1B2 LTR MaLR 1 355 -12 9 1633 252 186 0 0 chr1 137365309 137365352 -59830080 - B1_Mus1 SINE Alu -94 54 12 1 1633 1237 98 12 0 chr1 137365944 137366102 -59829330 + B2_Mm1a SINE B2 2 160 -33 1 1633 180 0 0 0 chr1 137366102 137366122 -59829310 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1633 1237 98 12 0 chr1 137366122 137366136 -59829296 + B2_Mm1a SINE B2 161 175 -18 1 1633 656 159 71 57 chr1 137368205 137368345 -59827087 - B1_Mur3 SINE Alu -7 142 1 1 1633 321 365 58 23 chr1 137368473 137368647 -59826785 + MIRc SINE MIR 51 230 -38 1 1633 225 0 0 0 chr1 137369077 137369102 -59826330 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1633 478 293 31 19 chr1 137369716 137369876 -59825556 + RSINE1 SINE B4 2 163 -2 1 1633 599 171 0 71 chr1 137370048 137370174 -59825258 - B1_Mus1 SINE Alu 0 148 32 1 1633 216 288 0 57 chr1 137370250 137370320 -59825112 - ID4 SINE ID 0 83 18 1 1633 285 286 0 0 chr1 137370796 137370859 -59824573 - ID4_ SINE ID -17 66 4 1 1633 231 139 0 0 chr1 137370892 137370918 -59824514 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1633 1066 43 56 21 chr1 137370918 137371060 -59824372 - B1_Mm SINE Alu 0 147 1 1 1633 231 139 0 0 chr1 137371060 137371076 -59824356 + (T)n Simple_repeat Simple_repeat 1 16 0 1 1633 518 217 84 15 chr1 137371080 137371211 -59824221 - B1F1 SINE Alu -8 141 2 1 1633 252 0 0 0 chr1 137371824 137371852 -59823580 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1633 1146 172 24 24 chr1 137372196 137372405 -59823027 - B3 SINE B2 -7 209 1 1 1633 339 312 48 91 chr1 137372949 137373136 -59822296 - B4A SINE B4 -112 180 2 1 1633 453 262 19 19 chr1 137373144 137373249 -59822183 - ID_B1 SINE B4 -1 223 119 1 1633 902 138 0 8 chr1 137373370 137373501 -59821931 - B1_Mur3 SINE Alu -8 141 12 1 1633 394 264 7 104 chr1 137373398 137373533 -59821899 - MT2B LTR ERVL -337 264 143 1 1633 489 275 196 7 chr1 137373802 137374077 -59821355 - HAL1 LINE L1 -1641 866 540 1 1633 726 179 41 93 chr1 137374485 137374657 -59820775 - RSINE1 SINE B4 0 165 3 1 1633 604 173 77 112 chr1 137374782 137374925 -59820507 - B1_Mur4 SINE Alu -12 138 1 1 1633 1269 27 0 20 chr1 137376054 137376204 -59819228 + B1_Mus1 SINE Alu 1 147 -1 1 1633 180 0 0 0 chr1 137376209 137376229 -59819203 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1633 189 281 75 45 chr1 137376516 137376583 -59818849 + L2c LINE L2 3294 3362 -25 1 1633 391 360 53 15 chr1 137376747 137376953 -59818479 - L1MCc LINE L1 -4893 1530 1317 1 1633 604 305 75 64 chr1 137377698 137377964 -59817468 + B4 SINE B4 2 270 -22 1 1633 865 176 58 12 chr1 137379279 137379451 -59815981 - B2_Mm2 SINE B2 -14 181 2 1 1633 641 232 222 124 chr1 137379726 137380019 -59815413 + MTEb LTR MaLR 58 379 0 1 1633 327 289 72 0 chr1 137380019 137380102 -59815330 + PB1D7 SINE Alu 26 114 -6 1 1633 1115 129 108 17 chr1 137380104 137380311 -59815121 + B3 SINE B2 9 213 -3 1 1633 261 119 0 45 chr1 137380767 137380811 -59814621 - MTEa LTR MaLR -65 314 273 1 1633 434 251 26 75 chr1 137380951 137381078 -59814354 + MER33 DNA MER1_type 108 234 -90 1 1633 1737 16 0 0 chr1 137381078 137381270 -59814162 - B2_Mm1a SINE B2 0 193 2 1 1633 434 251 26 75 chr1 137381270 137381370 -59814062 + MER33 DNA MER1_type 235 324 0 1 1633 231 305 0 0 chr1 137381619 137381678 -59813754 + PB1D10 SINE Alu 9 67 -50 1 1633 899 238 93 62 chr1 137382219 137382510 -59812922 - ORR1E LTR MaLR -2 357 58 1 1633 1454 59 21 0 chr1 137383458 137383645 -59811787 + B2_Mm1t SINE B2 3 193 0 1 1633 230 276 248 22 chr1 137383725 137383742 -59811690 - B4A SINE B4 -43 249 220 1 1633 633 106 91 55 chr1 137383742 137383754 -59811678 - PB1D9 SINE Alu 0 120 112 1 1633 297 0 0 0 chr1 137383754 137383787 -59811645 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1633 633 106 91 55 chr1 137383787 137383884 -59811548 - PB1D9 SINE Alu -9 111 7 1 1633 227 227 174 43 chr1 137383984 137384053 -59811379 - ID4_ SINE ID -3 80 3 1 1633 652 309 106 8 chr1 137384123 137384368 -59811064 + MLT1B LTR MaLR 116 384 -6 1 1633 559 259 9 0 chr1 137384500 137384616 -59810816 - B1F SINE Alu -1 148 32 1 1633 431 297 34 0 chr1 137384739 137384857 -59810575 - RSINE1 SINE B4 0 165 44 1 1633 1344 111 16 0 chr1 137384930 137385120 -59810312 - B2_Mm2 SINE B2 -2 193 1 1 1633 394 180 134 82 chr1 137386061 137386158 -59809274 - PB1D9 SINE Alu -14 106 5 1 1633 964 69 0 30 chr1 137386187 137386321 -59809111 - B1_Mus1 SINE Alu 0 148 19 1 1633 366 246 53 107 chr1 137386190 137386340 -59809092 - B4A SINE B4 -68 224 83 1 1633 780 254 95 71 chr1 137386655 137386823 -59808609 - MER58B DNA MER1_type -20 321 145 1 1633 384 113 0 0 chr1 137386823 137386885 -59808547 + Lx2B LINE L1 6929 6990 -10 1 1633 780 254 95 71 chr1 137386885 137387012 -59808420 - MER58B DNA MER1_type -197 144 19 1 1633 477 245 9 19 chr1 137387040 137387148 -59808284 + PB1D10 SINE Alu 5 111 -6 1 1633 576 0 0 0 chr1 137387879 137387943 -59807489 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1633 21 36 0 0 chr1 137389628 137389656 -59805776 + AT_rich Low_complexity Low_complexity 1 28 0 1 1633 896 125 34 34 chr1 137391340 137391489 -59803943 + B1_Mur2 SINE Alu 1 149 0 1 1633 200 86 29 0 chr1 137391575 137391610 -59803822 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1633 279 269 15 0 chr1 137392772 137392839 -59802593 + PB1D10 SINE Alu 45 112 -5 1 1633 282 175 270 0 chr1 137393340 137393403 -59802029 - ID4 SINE ID 0 83 4 1 1633 309 255 19 96 chr1 137393450 137393481 -59801951 - ID_B1 SINE B4 -47 177 82 1 1633 334 229 14 41 chr1 137393481 137393554 -59801878 - PB1D10 SINE Alu -46 71 1 1 1633 822 136 35 7 chr1 137393924 137394065 -59801367 + B1_Mus2 SINE Alu 1 145 -2 1 1633 253 220 50 17 chr1 137396596 137396656 -59798776 + B4A SINE B4 85 146 -146 1 1633 505 185 0 42 chr1 137396606 137396702 -59798730 + PB1D10 SINE Alu 13 104 -13 1 1633 261 83 0 0 chr1 137396702 137396738 -59798694 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1633 206 118 0 0 chr1 137398235 137398269 -59797163 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1633 497 209 45 0 chr1 137398295 137398405 -59797027 - PB1D10 SINE Alu 0 117 3 1 1633 253 269 45 0 chr1 137399628 137399695 -59795737 - ID4 SINE ID -12 71 2 1 1633 1212 56 0 0 chr1 137399802 137399944 -59795488 + B1_Mus1 SINE Alu 1 142 -6 1 1633 1142 99 6 0 chr1 137399948 137400119 -59795313 + (GAAAA)n Simple_repeat Simple_repeat 2 173 0 1 1633 935 204 130 105 chr1 137400734 137401095 -59794337 + ORR1D2 LTR MaLR 1 370 0 1 1633 421 216 109 40 chr1 137401947 137402048 -59793384 + PB1D10 SINE Alu 1 108 -9 1 1633 369 298 132 21 chr1 137402735 137402879 -59792553 - RSINE1 SINE B4 -2 163 4 1 1633 1039 122 7 0 chr1 137403352 137403499 -59791933 + B1_Mur3 SINE Alu 2 149 0 1 1633 183 156 0 0 chr1 137403512 137403544 -59791888 + GA-rich Low_complexity Low_complexity 2 33 0 1 1633 289 283 73 36 chr1 137403687 137403797 -59791635 - MIRc SINE MIR -137 131 18 1 1633 252 301 70 17 chr1 137403939 137404054 -59791378 + MIRb SINE MIR 39 159 -109 1 1633 1081 157 0 0 chr1 137407953 137408119 -59787313 + URR1B DNA MER1_type 51 216 -9 1 1633 303 291 105 33 chr1 137408275 137408428 -59787004 + RSINE1 SINE B4 2 165 0 1 1633 756 50 0 0 chr1 137409412 137409513 -59785919 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1633 458 79 0 13 chr1 137410608 137410685 -59784747 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 1 1633 216 245 0 86 chr1 137411022 137411080 -59784352 - B1F SINE Alu 0 149 97 1 1633 187 207 171 68 chr1 137411704 137411792 -59783640 - MIR3 SINE MIR -15 193 97 1 1633 445 283 50 59 chr1 137412487 137412727 -59782705 + L2b LINE L2 2881 3104 -271 1 1633 208 347 86 33 chr1 137412908 137413060 -59782372 - MIR SINE MIR -95 167 8 1 1633 295 317 162 18 chr1 137414549 137414777 -59780655 + MIRc SINE MIR 1 261 -7 1 1633 198 199 0 0 chr1 137415006 137415043 -59780389 - L2b LINE L2 -13 3374 3331 1 1633 1270 64 16 60 chr1 137416151 137416335 -59779097 - B2_Mm2 SINE B2 -14 181 6 1 1633 451 250 101 8 chr1 137416446 137416575 -59778857 + MLT1A1 LTR MaLR 268 408 0 1 1633 1563 37 21 11 chr1 137416711 137416901 -59778531 - B2_Mm1a SINE B2 0 193 2 1 1633 878 238 10 51 chr1 137416904 137417099 -59778333 - B3A SINE B2 -5 193 7 1 1633 650 259 167 23 chr1 137417836 137418010 -59777422 + B4A SINE B4 14 212 -80 1 1633 531 0 0 0 chr1 137418017 137418076 -59777356 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1633 330 26 0 0 chr1 137418076 137418114 -59777318 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1633 877 256 13 104 chr1 137418181 137418274 -59777158 + B3 SINE B2 1 93 -123 1 1633 2041 178 24 19 chr1 137418274 137418501 -59776931 + ORR1D1 LTR MaLR 1 226 -148 1 1633 228 67 0 0 chr1 137418501 137418531 -59776901 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 1 1633 2041 178 24 19 chr1 137418531 137418675 -59776757 + ORR1D1 LTR MaLR 227 374 0 1 1633 877 256 13 104 chr1 137418675 137418812 -59776620 + B3 SINE B2 94 210 -6 1 1633 201 206 43 14 chr1 137418858 137418927 -59776505 + L3 LINE CR1 1945 2015 -2474 1 1633 643 191 72 14 chr1 137419045 137419068 -59776364 - B1_Mm SINE Alu -1 146 124 1 1633 279 0 0 0 chr1 137419068 137419099 -59776333 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1633 643 191 72 14 chr1 137419099 137419213 -59776219 - B1_Mm SINE Alu -24 123 2 1 1633 752 164 0 16 chr1 137419232 137419356 -59776076 - B1_Mur1 SINE Alu -3 146 25 1 1633 376 279 73 16 chr1 137419362 137419486 -59775946 - MIRc SINE MIR -124 144 14 1 1633 1528 228 54 6 chr1 137419671 137420006 -59775426 + ORR1E LTR MaLR 1 351 -8 1 1633 220 131 167 76 chr1 137420004 137420070 -59775362 - ID4 SINE ID -10 73 2 1 1633 204 200 0 0 chr1 137421416 137421461 -59773971 + T-rich Low_complexity Low_complexity 1 45 0 1 1633 452 215 69 7 chr1 137421769 137421914 -59773518 + L1MA6 LINE L1 5019 5172 -968 1 1633 332 333 19 0 chr1 137421921 137422026 -59773406 + PB1 SINE Alu 4 110 -17 1 1633 453 308 0 8 chr1 137422067 137422185 -59773247 + PB1D10 SINE Alu 1 117 0 1 1633 1117 286 87 24 chr1 137422220 137422936 -59772496 + L1MA6 LINE L1 5167 5935 -365 1 1633 1661 37 0 0 chr1 137423068 137423259 -59772173 - B2_Mm1a SINE B2 -2 191 1 1 1633 894 224 25 50 chr1 137423259 137423279 -59772153 - B3A SINE B2 -7 191 175 1 1633 321 93 0 0 chr1 137423279 137423333 -59772099 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1633 894 224 25 50 chr1 137423333 137423505 -59771927 - B3A SINE B2 -24 174 1 1 1633 458 241 92 0 chr1 137423562 137423703 -59771729 + L1MA6 LINE L1 6094 6247 -53 1 1633 582 268 8 23 chr1 137423703 137423833 -59771599 + ID_B1 SINE B4 90 217 -7 1 1633 1068 259 64 74 chr1 137424439 137425036 -59770396 + L1MB3 LINE L1 5539 6129 -54 1 1633 419 101 353 29 chr1 137425568 137425670 -59769762 - B2_Mm2 SINE B2 -14 181 47 1 1633 1310 97 11 0 chr1 137425717 137425893 -59769539 - B2_Mm1t SINE B2 -14 179 2 1 1633 1069 212 16 0 chr1 137425921 137426110 -59769322 - B3 SINE B2 -17 199 8 1 1633 1932 132 126 25 chr1 137426362 137426720 -59768712 + ORR1B1 LTR MaLR 1 394 0 1 1633 354 309 36 67 chr1 137427268 137427462 -59767970 - MIR SINE MIR -3 259 72 1 1633 180 269 58 29 chr1 137429546 137429615 -59765817 + MIR SINE MIR 104 174 -88 1 1633 231 114 0 0 chr1 137430934 137430969 -59764463 + (ATG)n Simple_repeat Simple_repeat 3 37 0 1 1633 670 142 155 16 chr1 137431186 137431315 -59764117 - B1_Mur4 SINE Alu -1 149 3 1 1633 231 170 0 0 chr1 137432425 137432472 -59762960 + T-rich Low_complexity Low_complexity 1 47 0 1 1633 1099 97 7 0 chr1 137432475 137432620 -59762812 - B1_Mus1 SINE Alu 0 148 3 1 1633 804 208 28 0 chr1 137434723 137434867 -59760565 + B1_Mur1 SINE Alu 2 149 0 1 1633 189 213 0 0 chr1 137434868 137434915 -59760517 + A-rich Low_complexity Low_complexity 1 47 0 1 1633 180 0 0 0 chr1 137434948 137434968 -59760464 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 1 1633 468 272 38 76 chr1 137435938 137436115 -59759317 - MIRb SINE MIR -46 222 45 1 1633 182 182 30 0 chr1 137436150 137436183 -59759249 + MIRb SINE MIR 218 251 -17 1 1633 203 160 40 0 chr1 137436238 137436288 -59759144 + (TATG)n Simple_repeat Simple_repeat 2 53 0 1 1633 1183 74 0 0 chr1 137436497 137436645 -59758787 + B1_Mus1 SINE Alu 1 148 0 1 1633 216 0 0 0 chr1 137436645 137436669 -59758763 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1633 450 0 0 0 chr1 137436761 137436811 -59758621 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1633 434 49 16 0 chr1 137437133 137437194 -59758238 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1633 359 41 0 20 chr1 137437631 137437681 -59757751 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1633 420 20 0 0 chr1 137438041 137438090 -59757342 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1633 857 168 0 0 chr1 137438238 137438375 -59757057 + B1_Mus2 SINE Alu 2 138 -9 1 1633 1614 40 5 0 chr1 137438428 137438628 -59756804 + L1Md_A LINE L1 6382 6582 0 1 1633 189 336 106 0 chr1 137438714 137438818 -59756614 + MIRb SINE MIR 128 242 -26 1 1633 180 0 0 0 chr1 137439829 137439849 -59755583 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1633 288 0 0 0 chr1 137440652 137440684 -59754748 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1633 1454 83 16 0 chr1 137440851 137441043 -59754389 - B2_Mm2 SINE B2 0 195 1 1 1633 361 233 117 0 chr1 137441090 137441210 -59754222 + MIR3 SINE MIR 71 204 -4 1 1633 883 116 12 87 chr1 137442363 137442524 -59752908 - B1_Mur4 SINE Alu -1 149 1 1 1633 364 312 58 31 chr1 137443014 137443215 -59752217 - MIRc SINE MIR -38 238 26 1 1633 1428 289 123 53 chr1 137443259 137443976 -59751456 - L1MB7 LINE L1 -32 6152 5386 1 1633 276 337 89 30 chr1 137445047 137445249 -59750183 - MIRb SINE MIR -14 254 41 1 1633 206 209 0 107 chr1 137445923 137445998 -59749434 + MIR SINE MIR 64 130 -132 1 1633 240 256 0 0 chr1 137446687 137446773 -59748659 + (TATATG)n Simple_repeat Simple_repeat 6 91 0 1 1633 309 286 0 0 chr1 137446795 137446959 -59748473 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 1633 188 275 0 0 chr1 137447057 137447097 -59748335 - L2c LINE L2 -11 3376 3337 1 1633 696 190 26 72 chr1 137448348 137448501 -59746931 + B1_Mur2 SINE Alu 3 148 -1 1 1633 188 298 53 0 chr1 137448770 137448827 -59746605 + L2c LINE L2 3295 3354 -33 1 1633 2300 81 135 6 chr1 137448843 137449168 -59746264 - ORR1B2 LTR MaLR 0 367 1 1 1633 725 134 150 0 chr1 137449521 137449648 -59745784 - B1_Mur4 SINE Alu -4 146 1 1 1633 25 0 0 0 chr1 137449666 137449691 -59745741 + AT_rich Low_complexity Low_complexity 1 25 0 1 1633 450 108 0 0 chr1 137450192 137450275 -59745157 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1633 270 0 0 0 chr1 137450568 137450598 -59744834 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1633 842 88 41 21 chr1 137450641 137450935 -59744497 + (CA)n Simple_repeat Simple_repeat 1 300 0 1 1633 428 306 16 0 chr1 137452226 137452347 -59743085 + MER20 DNA MER1_type 88 210 -9 1 1633 232 247 40 119 chr1 137452399 137452500 -59742932 + Charlie4z DNA MER1_type 18 110 -57 1 1633 288 350 78 42 chr1 137454094 137454261 -59741171 + MIR SINE MIR 81 253 -9 1 1633 752 204 125 0 chr1 137455128 137455304 -59740128 + B3A SINE B2 1 198 0 1 1633 946 168 0 13 chr1 137455341 137455492 -59739940 + B1_Mur4 SINE Alu 1 149 -1 1 1633 856 316 17 45 chr1 137456210 137456628 -59738804 + L1MC3 LINE L1 6494 6915 -1080 1 1633 412 283 48 0 chr1 137456834 137456979 -59738453 + L1MC3 LINE L1 6946 7097 -688 1 1633 447 340 89 9 chr1 137457026 137457254 -59738178 + MIR SINE MIR 4 247 -15 1 1633 1027 257 20 81 chr1 137458293 137458589 -59736843 + B4 SINE B4 11 288 -4 1 1633 1238 194 59 84 chr1 137458749 137459094 -59736338 + MTD LTR MaLR 3 327 -80 1 1633 1087 58 181 7 chr1 137459461 137459616 -59735816 + B2_Mm2 SINE B2 2 183 -12 1 1633 492 18 0 0 chr1 137459616 137459673 -59735759 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1633 1035 216 54 0 chr1 137462837 137463041 -59732391 + B3 SINE B2 2 216 0 1 1633 981 58 0 0 chr1 137463116 137463253 -59732179 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 1 1633 666 162 8 8 chr1 137463864 137463982 -59731450 - B1_Mur4 SINE Alu -2 148 31 1 1633 232 292 51 89 chr1 137464098 137464256 -59731176 + MIRb SINE MIR 91 246 -22 1 1633 241 291 21 37 chr1 137464925 137465033 -59730399 - MIR SINE MIR -94 174 71 1 1633 304 271 92 53 chr1 137465254 137465455 -59729977 - B4A SINE B4 -79 213 1 1 1633 474 88 0 0 chr1 137465776 137465844 -59729588 + (CCA)n Simple_repeat Simple_repeat 1 68 0 1 1633 203 293 83 72 chr1 137466337 137466517 -59728915 + L2 LINE L2 2669 2850 -569 1 1633 383 195 64 13 chr1 137466532 137466629 -59728803 + B1_Mur3 SINE Alu 41 139 -10 1 1633 238 47 0 65 chr1 137466645 137466691 -59728741 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 1 1633 1025 113 0 28 chr1 137467630 137467775 -59727657 - B1_Mus1 SINE Alu -7 141 1 1 1633 269 313 73 22 chr1 137468005 137468184 -59727248 + MIR3 SINE MIR 16 193 -15 1 1633 264 247 112 0 chr1 137468319 137468408 -59727024 + MIR3 SINE MIR 110 208 0 1 1633 243 0 0 0 chr1 137469029 137469056 -59726376 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 1 1633 693 0 0 0 chr1 137469057 137469134 -59726298 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 1 1633 469 220 178 0 chr1 137469557 137469675 -59725757 + B1_Mur1 SINE Alu 1 139 -10 1 1633 207 0 0 0 chr1 137469675 137469698 -59725734 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1633 212 361 8 40 chr1 137470875 137470999 -59724433 - MIRb SINE MIR -131 137 18 1 1633 199 328 147 8 chr1 137472247 137472376 -59723056 - MIRb SINE MIR -3 265 119 1 1633 897 77 161 0 chr1 137472872 137473015 -59722417 + MTC LTR MaLR 248 413 -8 1 1633 299 282 0 25 chr1 137473024 137473104 -59722328 - PB1D10 SINE Alu -39 78 1 1 1633 540 163 0 31 chr1 137473335 137473462 -59721970 + G-rich Low_complexity Low_complexity 2 124 0 1 1633 729 0 0 0 chr1 137474050 137474131 -59721301 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 1 1633 22 0 0 0 chr1 137476180 137476202 -59719230 + AT_rich Low_complexity Low_complexity 1 22 0 1 1633 268 376 138 20 chr1 137476399 137476551 -59718881 + L3 LINE CR1 4284 4453 -36 1 1633 300 27 0 0 chr1 137477495 137477532 -59717900 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1633 232 197 0 129 chr1 137479083 137479153 -59716279 - BGLII_B LTR ERVK -275 166 106 1 1633 231 294 95 35 chr1 137479504 137479696 -59715736 + L2a LINE L2 3106 3335 -91 1 1633 180 111 0 0 chr1 137481824 137481851 -59713581 + (CCG)n Simple_repeat Simple_repeat 3 29 0 1 1633 377 340 6 12 chr1 137481942 137482106 -59713326 + G-rich Low_complexity Low_complexity 3 165 0 1 1633 23 0 0 0 chr1 137482162 137482185 -59713247 + AT_rich Low_complexity Low_complexity 1 23 0 1 1633 206 320 0 13 chr1 137482372 137482448 -59712984 + G-rich Low_complexity Low_complexity 4 78 0 1 1633 1186 61 7 0 chr1 137483072 137483219 -59712213 - B1_Mus1 SINE Alu 0 148 1 1 1633 246 228 5 0 chr1 137484000 137484063 -59711369 - B1F SINE Alu -42 85 22 1 1633 407 282 62 39 chr1 137486290 137486419 -59709013 + RSINE1 SINE B4 3 134 -31 1 1633 282 269 69 88 chr1 137486715 137486874 -59708558 - L2 LINE L2 -705 2714 2559 1 1633 1439 86 0 5 chr1 137486875 137487062 -59708370 + B2_Mm2 SINE B2 2 187 -8 1 1633 336 263 124 21 chr1 137487170 137487267 -59708165 - PB1D10 SINE Alu -10 107 1 1 1633 1186 81 0 0 chr1 137488748 137488908 -59706524 - B2_Mm2 SINE B2 -34 161 2 1 1633 199 288 34 0 chr1 137489537 137489596 -59705836 - MIR SINE MIR -80 182 122 1 1633 315 0 0 0 chr1 137490396 137490431 -59705001 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1633 495 0 0 0 chr1 137490431 137490485 -59704947 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1633 348 275 24 113 chr1 137491568 137491736 -59703696 + B4 SINE B4 71 223 -69 1 1633 691 201 14 28 chr1 137491595 137491738 -59703694 + B1_Mur1 SINE Alu 9 149 0 1 1633 381 22 0 0 chr1 137492288 137492334 -59703098 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1633 493 280 213 20 chr1 137492629 137492826 -59702606 + MTE2a LTR MaLR 55 289 -90 1 1633 241 270 143 48 chr1 137492973 137493078 -59702354 + L2a LINE L2 3312 3426 0 1 1633 343 301 124 14 chr1 137493574 137493719 -59701713 + MIR SINE MIR 6 166 -96 1 1633 282 321 26 9 chr1 137493729 137493842 -59701590 - MIR SINE MIR 0 262 148 1 1633 661 239 0 7 chr1 137493866 137494005 -59701427 - ID_B1 SINE B4 -5 219 82 1 1633 238 300 0 99 chr1 137493914 137494025 -59701407 - MT2B2 LTR ERVL -336 248 149 1 1633 190 389 56 0 chr1 137494034 137494142 -59701290 - MIR SINE MIR -126 136 23 1 1634 241 182 35 52 chr1 137494861 137494919 -59700513 + MIR SINE MIR 205 261 -1 1 1634 202 371 10 30 chr1 137496364 137496464 -59698968 + L2c LINE L2 3278 3375 -12 1 1634 251 318 0 0 chr1 137497526 137497592 -59697840 + ID2 SINE ID 18 83 0 1 1634 1113 68 0 0 chr1 137498394 137498527 -59696905 + B1_Mus2 SINE Alu 2 134 -13 1 1634 427 296 129 0 chr1 137498529 137498661 -59696771 + RSINE1 SINE B4 3 151 -14 1 1634 405 0 0 0 chr1 137498664 137498709 -59696723 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1634 402 138 0 140 chr1 137498739 137498809 -59696623 + B1_Mur1 SINE Alu 70 133 -16 1 1634 495 0 0 0 chr1 137498809 137498864 -59696568 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1634 402 138 0 140 chr1 137498864 137498886 -59696546 + B1_Mur1 SINE Alu 134 149 0 1 1634 300 318 93 0 chr1 137498916 137499023 -59696409 + PB1D10 SINE Alu 1 117 0 1 1634 241 293 24 24 chr1 137500067 137500151 -59695281 + MIR SINE MIR 49 132 -76 1 1634 220 291 0 0 chr1 137501983 137502038 -59693394 + ID4 SINE ID 18 72 -11 2 1634 983 324 72 36 chr1 137502231 137502702 -59692730 - L3 LINE CR1 -113 4376 3889 3 1634 183 80 0 0 chr1 137503252 137503277 -59692155 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1634 1215 97 0 0 chr1 137504859 137505035 -59690397 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 5 1634 1203 36 0 0 chr1 137505035 137505172 -59690260 - B1_Mus1 SINE Alu -9 139 3 6 1634 304 347 47 63 chr1 137505346 137505601 -59689831 + L1M5 LINE L1 4964 5214 -932 7 1634 327 279 68 21 chr1 137505818 137505933 -59689499 - B1_Mur1 SINE Alu -23 125 7 8 1634 302 217 0 0 chr1 137506070 137506130 -59689302 + L1M5 LINE L1 5636 5695 -429 7 1634 204 368 160 17 chr1 137506328 137506447 -59688985 + L4 LINE RTE 492 627 -1402 9 1634 180 0 0 0 chr1 137506613 137506633 -59688799 + (CAGAG)n Simple_repeat Simple_repeat 2 21 0 1 1634 261 0 0 0 chr1 137506633 137506662 -59688770 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1634 1839 84 6 133 chr1 137506724 137506986 -59688446 + ORR1A4 LTR MaLR 34 288 -41 1 1634 1142 80 0 0 chr1 137506986 137507123 -59688309 + B1_Mus1 SINE Alu 3 139 -9 1 1634 1839 84 6 133 chr1 137507123 137507190 -59688242 + ORR1A4 LTR MaLR 289 321 -8 1 1634 251 211 54 40 chr1 137508387 137508461 -59686971 - MIR SINE MIR -71 191 117 1 1634 2311 164 76 116 chr1 137508872 137509112 -59686320 + MT2A LTR ERVL 3 269 -264 1 1634 3066 85 5 2 chr1 137509112 137509511 -59685921 + MTB LTR MaLR 1 400 0 1 1634 2311 164 76 116 chr1 137509511 137509823 -59685609 + MT2A LTR ERVL 270 532 -1 1 1634 1043 16 0 8 chr1 137510232 137510358 -59685074 + (GGGAGA)n Simple_repeat Simple_repeat 3 127 0 1 1634 278 377 80 46 chr1 137510833 137511072 -59684360 + MIR SINE MIR 7 253 -9 1 1634 796 272 79 0 chr1 137511138 137511340 -59684092 - ID_B1 SINE B4 -1 223 6 1 1634 675 198 186 0 chr1 137511946 137512113 -59683319 - B3A SINE B2 0 198 1 2 1634 254 271 62 72 chr1 137512235 137512347 -59683085 - MIR SINE MIR -118 150 23 2 1634 521 282 81 50 chr1 137513329 137513544 -59681888 + B3A SINE B2 1 191 -25 2 1634 645 291 0 0 chr1 137513541 137513689 -59681743 + B3A SINE B2 33 180 -18 2 1634 983 233 5 45 chr1 137513712 137513932 -59681500 + B3 SINE B2 3 213 -3 2 1634 432 0 0 0 chr1 137514367 137514415 -59681017 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1634 815 280 102 24 chr1 137514421 137514714 -59680718 + MLT1A0 LTR MaLR 3 318 -47 2 1634 200 236 11 0 chr1 137514835 137514924 -59680508 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1634 26 50 0 0 chr1 137514955 137514995 -59680437 + AT_rich Low_complexity Low_complexity 1 40 0 2 1634 189 171 0 0 chr1 137515008 137515043 -59680389 + T-rich Low_complexity Low_complexity 1 35 0 2 1634 963 155 14 0 chr1 137515043 137515191 -59680241 - B1_Mur4 SINE Alu 0 150 1 3 1634 724 275 30 45 chr1 137515208 137515410 -59680022 - B4 SINE B4 -74 218 20 3 1634 180 111 0 0 chr1 137516494 137516521 -59678911 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1634 1073 68 0 7 chr1 137517121 137517269 -59678163 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 3 1634 2268 31 0 0 chr1 137517274 137517532 -59677900 - L1_Mus1 LINE L1 0 6567 6310 3 1634 2987 57 22 22 chr1 137517532 137517944 -59677488 + L1_Mus1 LINE L1 5905 6316 -251 3 1634 235 218 0 0 chr1 137518307 137518362 -59677070 + G-rich Low_complexity Low_complexity 2 56 0 3 1634 1139 106 60 27 chr1 137518748 137518933 -59676499 + B2_Mm2 SINE B2 2 192 -3 3 1634 208 119 14 69 chr1 137518982 137519054 -59676378 + (TTA)n Simple_repeat Simple_repeat 3 70 0 3 1634 769 186 99 22 chr1 137519055 137519236 -59676196 + B3A SINE B2 4 198 0 3 1634 234 0 0 0 chr1 137519540 137519566 -59675866 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1634 910 154 14 7 chr1 137519586 137519730 -59675702 - B1_Mus2 SINE Alu 0 147 3 4 1634 712 237 30 0 chr1 137520128 137520263 -59675169 + B1_Mur2 SINE Alu 2 140 -9 4 1634 410 127 14 0 chr1 137520264 137520335 -59675097 + (CAAT)n Simple_repeat Simple_repeat 4 75 0 4 1634 1159 88 0 0 chr1 137520872 137521019 -59674413 - B1_Mus1 SINE Alu 0 148 2 4 1634 315 349 38 0 chr1 137521806 137521938 -59673494 + MIRb SINE MIR 19 155 -113 4 1634 449 266 9 26 chr1 137521939 137522055 -59673377 + PB1D10 SINE Alu 4 117 0 4 1634 219 69 0 0 chr1 137523726 137523755 -59671677 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1634 513 331 20 13 chr1 137523781 137523931 -59671501 - RSINE1 SINE B4 -12 153 3 4 1634 477 303 130 17 chr1 137523980 137524243 -59671189 - MLT1A0 LTR MaLR -3 362 34 4 1634 642 191 62 28 chr1 137524669 137524814 -59670618 - B1_Mur4 SINE Alu 0 150 1 4 1634 832 266 135 40 chr1 137525073 137525472 -59669960 - L1MA4 LINE L1 -388 5912 5476 5 1634 493 274 15 7 chr1 137525489 137525625 -59669807 - L1MC4a LINE L1 -67 7815 7679 5 1634 566 277 60 20 chr1 137525719 137525870 -59669562 + RSINE1 SINE B4 3 159 -6 5 1634 1182 57 0 0 chr1 137525903 137526044 -59669388 + B1_Mus1 SINE Alu 2 142 -6 5 1634 624 39 0 0 chr1 137526065 137526143 -59669289 + BC1_Mm scRNA scRNA 1 78 -74 5 1634 294 29 0 0 chr1 137526143 137526178 -59669254 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1634 215 339 34 59 chr1 137526978 137527097 -59668335 + L3 LINE CR1 3955 4070 -419 5 1634 269 236 247 0 chr1 137527498 137527587 -59667845 - PB1D10 SINE Alu -6 111 1 5 1634 2175 142 20 6 chr1 137528647 137529000 -59666432 - ORR1B2 LTR MaLR -9 358 1 5 1634 1307 67 49 22 chr1 137529258 137529441 -59665991 + B2_Mm2 SINE B2 1 188 -7 5 1634 198 0 0 0 chr1 137529479 137529501 -59665931 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1634 413 322 16 0 chr1 137529849 137529970 -59665462 - MIR SINE MIR -23 239 117 6 1634 2500 125 21 0 chr1 137530426 137530802 -59664630 - ORR1B1 LTR MaLR -8 386 3 6 1634 186 171 98 0 chr1 137531808 137531849 -59663583 + MIRb SINE MIR 40 84 -184 6 1634 305 186 0 55 chr1 137533475 137533566 -59661866 + CT-rich Low_complexity Low_complexity 3 88 0 6 1634 1102 102 7 0 chr1 137534865 137535012 -59660420 - B1_Mus1 SINE Alu 0 148 1 6 1634 357 273 161 28 chr1 137535544 137535687 -59659745 + L1ME1 LINE L1 5968 6129 -50 6 1634 21 36 0 0 chr1 137535692 137535720 -59659712 + AT_rich Low_complexity Low_complexity 1 28 0 6 1634 224 338 13 0 chr1 137535840 137535917 -59659515 + MIRb SINE MIR 114 191 -77 6 1634 281 135 3 0 chr1 137536023 137536069 -59659363 - MIR SINE MIR -103 165 112 6 1634 458 33 17 0 chr1 137536233 137536293 -59659139 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1634 1260 41 0 0 chr1 137536341 137536487 -59658945 - B1_Mus2 SINE Alu 0 147 2 7 1634 612 310 104 22 chr1 137536496 137536813 -59658619 - L1MB7 LINE L1 -53 6131 5789 7 1634 416 297 30 109 chr1 137536823 137537088 -59658344 - MTEa LTR MaLR -8 371 93 7 1634 1272 93 5 63 chr1 137537134 137537340 -59658092 + B2_Mm2 SINE B2 2 195 0 7 1634 367 298 62 76 chr1 137537461 137537554 -59657878 - L1MB7 LINE L1 -464 5720 5633 7 1634 940 244 5 10 chr1 137537554 137537753 -59657679 + B3A SINE B2 1 198 0 7 1634 367 298 62 76 chr1 137537753 137537884 -59657548 - L1MB7 LINE L1 -552 5632 5499 7 1634 493 309 98 33 chr1 137537902 137538086 -59657346 - B3A SINE B2 -2 196 1 7 1634 578 244 36 0 chr1 137538097 137538265 -59657167 - L1MB7 LINE L1 -686 5492 5319 7 1634 243 333 28 0 chr1 137538278 137538350 -59657082 - ID4 SINE ID -2 81 8 7 1634 358 234 267 25 chr1 137538349 137538492 -59656940 + MLT1B LTR MaLR 237 467 0 7 1634 333 253 33 0 chr1 137538496 137538587 -59656845 - L1MB3 LINE L1 -74 6109 6016 7 1634 632 192 94 50 chr1 137538629 137538788 -59656644 + B3 SINE B2 38 203 -13 8 1634 186 43 0 0 chr1 137538788 137538811 -59656621 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1634 1375 52 35 0 chr1 137538882 137539056 -59656376 + L1Md_T LINE L1 6401 6580 -2 8 1634 2136 48 4 11 chr1 137539294 137539567 -59655865 + ORR1A2 LTR MaLR 57 327 0 8 1634 238 233 163 0 chr1 137539885 137539971 -59655461 - L1MB3 LINE L1 -263 5920 5821 7 1634 485 215 148 8 chr1 137539995 137540117 -59655315 - B1F SINE Alu -9 140 2 8 1634 360 250 0 0 chr1 137540129 137540225 -59655207 + (TA)n Simple_repeat Simple_repeat 2 97 0 8 1634 256 321 12 0 chr1 137540275 137540356 -59655076 + ID4_ SINE ID 2 83 0 8 1634 201 200 0 52 chr1 137541375 137541433 -59653999 + T-rich Low_complexity Low_complexity 1 55 0 8 1634 902 108 0 92 chr1 137541433 137541596 -59653836 - B1_Mus1 SINE Alu 0 148 1 8 1634 218 358 0 0 chr1 137542132 137542199 -59653233 - MIRc SINE MIR -142 126 60 8 1634 223 273 0 0 chr1 137542805 137542860 -59652572 + ID_B1 SINE B4 87 141 -83 9 1634 618 14 0 0 chr1 137542860 137542931 -59652501 + (GA)n Simple_repeat Simple_repeat 1 71 0 9 1634 244 304 57 29 chr1 137543444 137543549 -59651883 + LTR33A LTR ERVL 384 491 -29 9 1634 1052 110 0 0 chr1 137543552 137543697 -59651735 + B1_Mur4 SINE Alu 5 149 -1 9 1634 431 275 62 35 chr1 137543965 137544078 -59651354 - B1_Mur1 SINE Alu -2 147 32 9 1634 402 21 0 0 chr1 137544078 137544125 -59651307 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 9 1634 368 285 97 30 chr1 137544127 137544261 -59651171 - B4A SINE B4 -67 225 83 9 1634 732 80 0 0 chr1 137544264 137544364 -59651068 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 9 1634 450 212 239 0 chr1 137544365 137544478 -59650954 - B1_Mur1 SINE Alu -8 141 2 9 1634 201 315 139 61 chr1 137545002 137545117 -59650315 + L2b LINE L2 3036 3159 -216 9 1634 2352 97 0 0 chr1 137545143 137545463 -59649969 + ORR1A2 LTR MaLR 1 320 -7 1 1634 180 0 0 0 chr1 137545606 137545626 -59649806 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1 1634 1420 298 102 81 chr1 137545716 137545818 -59649614 + MLT2B3 LTR ERVL 21 162 -392 1 1634 492 18 0 0 chr1 137545818 137545875 -59649557 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1634 270 0 0 0 chr1 137545875 137545904 -59649528 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1634 1420 298 102 81 chr1 137545904 137546319 -59649113 + MLT2B3 LTR ERVL 163 549 -5 1 1634 1000 281 22 15 chr1 137546325 137546484 -59648948 + L1MDa LINE L1 48 209 -6424 1 1634 560 27 27 0 chr1 137546484 137546557 -59648875 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 1 1634 1000 320 151 8 chr1 137546557 137546974 -59648458 + L1MDa LINE L1 210 771 -5862 1 1634 625 264 133 34 chr1 137547037 137547449 -59647983 + L1MDa LINE L1 1301 1753 -4880 1 1634 365 276 13 0 chr1 137547553 137547629 -59647803 + RSINE1 SINE B4 51 127 -38 1 1634 462 36 0 0 chr1 137547689 137547745 -59647687 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1 1634 628 317 5 13 chr1 137547818 137548042 -59647390 + L1MDa LINE L1 1811 2032 -4601 1 1634 246 200 18 0 chr1 137548038 137548093 -59647339 + L1MD1 LINE L1 4805 4860 -1286 1 1634 314 217 29 0 chr1 137548120 137548189 -59647243 - ID4 SINE ID -11 72 2 1 1634 189 0 0 0 chr1 137548196 137548217 -59647215 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1634 316 253 27 0 chr1 137548217 137548292 -59647140 + L1MD1 LINE L1 4856 4932 -1214 1 1634 1312 104 111 22 chr1 137548343 137548546 -59646886 + RMER6C LTR ERVK 2 224 -466 1 1634 429 129 0 0 chr1 137548546 137548608 -59646824 + B2_Mm2 SINE B2 1 62 -133 1 1634 245 296 54 104 chr1 137548643 137548865 -59646567 - RLTR41 LTR ERV1 -45 401 191 1 1634 213 65 0 0 chr1 137549037 137549068 -59646364 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1634 563 89 189 0 chr1 137549237 137549327 -59646105 + B2_Mm2 SINE B2 58 164 -31 1 1634 1388 79 16 11 chr1 137549362 137549553 -59645879 + B2_Mm2 SINE B2 2 193 -2 1 1634 2375 135 17 120 chr1 137549553 137550093 -59645339 + RMER6C LTR ERVK 207 690 0 1 1634 411 343 28 88 chr1 137550093 137550275 -59645157 + L1MD1 LINE L1 4988 5158 -988 1 1634 236 296 79 90 chr1 137550290 137550379 -59645053 + B1F1 SINE Alu 7 94 -55 1 1634 932 266 42 85 chr1 137550489 137551182 -59644250 + L1MD1 LINE L1 5200 5849 -393 1 1634 468 220 80 60 chr1 137551219 137551374 -59644058 + B3A SINE B2 57 213 -3 1 1634 1176 29 0 0 chr1 137551375 137551515 -59643917 + (GAA)n Simple_repeat Simple_repeat 2 141 0 1 1634 560 139 0 15 chr1 137552213 137552344 -59643088 + (TCTG)n Simple_repeat Simple_repeat 4 132 0 1 1634 996 90 0 0 chr1 137553421 137553554 -59641878 - B1_Mus1 SINE Alu -5 143 11 1 1634 304 305 214 0 chr1 137553563 137553694 -59641738 - MIR SINE MIR -98 164 6 1 1634 789 11 0 0 chr1 137554176 137554266 -59641166 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1 1634 429 104 0 0 chr1 137554324 137554401 -59641031 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1634 360 0 0 0 chr1 137554401 137554441 -59640991 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1634 821 194 0 0 chr1 137555246 137555375 -59640057 - B1_Mur4 SINE Alu -20 130 2 1 1634 480 262 0 0 chr1 137557332 137557500 -59637932 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1634 300 176 20 0 chr1 137557503 137557554 -59637878 + HAL1-3A_ME LINE L1 1976 2027 -831 1 1634 342 182 0 0 chr1 137557562 137557628 -59637804 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1 1634 300 196 20 0 chr1 137557635 137557686 -59637746 + HAL1-3A_ME LINE L1 1976 2027 -831 1 1634 699 171 23 6 chr1 137557694 137557865 -59637567 + (CATA)n Simple_repeat Simple_repeat 3 176 0 1 1634 297 261 72 0 chr1 137557951 137558020 -59637412 + ID4_ SINE ID 1 74 -9 1 1634 674 236 50 0 chr1 137558161 137558301 -59637131 + B1F2 SINE Alu 1 147 -2 1 1634 255 83 28 0 chr1 137559050 137559086 -59636346 - MIRc SINE MIR -118 150 114 1 1634 546 226 0 34 chr1 137559701 137559820 -59635612 - PB1D10 SINE Alu -2 115 1 1 1634 422 36 18 0 chr1 137560403 137560459 -59634973 + (CAAAA)n Simple_repeat Simple_repeat 5 61 0 1 1634 259 222 12 36 chr1 137561585 137561669 -59633763 + G-rich Low_complexity Low_complexity 3 84 0 1 1634 320 196 15 219 chr1 137562598 137562735 -59632697 + MTEb LTR MaLR 264 372 -7 1 1634 23 0 0 0 chr1 137562894 137562917 -59632515 + AT_rich Low_complexity Low_complexity 1 23 0 1 1634 1053 68 0 114 chr1 137562917 137563083 -59632349 - B1_Mus1 SINE Alu 0 148 2 1 1634 275 299 0 58 chr1 137563377 137563476 -59631956 - ID4 SINE ID -51 101 10 1 1634 246 306 81 0 chr1 137563475 137563586 -59631846 + MLT1D LTR MaLR 378 497 -8 1 1634 190 386 34 0 chr1 137563946 137564034 -59631398 + MIR SINE MIR 118 208 -54 1 1634 1294 20 7 0 chr1 137564410 137564556 -59630876 - B1_Mm SINE Alu 0 147 1 1 1634 469 0 33 0 chr1 137564730 137564791 -59630641 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1634 198 0 0 0 chr1 137566875 137566897 -59628535 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1634 195 238 55 77 chr1 137567679 137567770 -59627662 - MIRm SINE MIR -88 188 100 1 1634 207 306 51 122 chr1 137567772 137567928 -59627504 - MIRb SINE MIR -7 261 117 1 1634 876 242 10 15 chr1 137568069 137568266 -59627166 - B3A SINE B2 -1 197 2 1 1634 250 226 14 72 chr1 137568368 137568506 -59626926 + (CACAG)n Simple_repeat Simple_repeat 3 132 0 1 1634 610 257 64 59 chr1 137570701 137570920 -59624512 + MLT1C LTR MaLR 6 225 -165 1 1634 1241 202 5 5 chr1 137571092 137571306 -59624126 - B3 SINE B2 -1 215 2 1 1634 372 178 42 27 chr1 137571423 137571521 -59623911 - B1_Mur1 SINE Alu -1 148 11 1 1634 585 206 260 24 chr1 137571611 137571637 -59623795 - B3 SINE B2 -7 209 171 1 1634 502 15 30 0 chr1 137571637 137571704 -59623728 + (TATG)n Simple_repeat Simple_repeat 2 70 0 1 1634 585 206 260 24 chr1 137571704 137571846 -59623586 - B3 SINE B2 -46 170 3 1 1634 459 189 44 0 chr1 137571848 137571938 -59623494 - PB1D10 SINE Alu -11 106 13 1 1634 312 287 42 11 chr1 137572748 137572843 -59622589 - B1F SINE Alu -18 131 34 1 1634 308 329 25 12 chr1 137572982 137573098 -59622334 + B1F SINE Alu 2 120 0 1 1634 340 320 66 39 chr1 137573189 137573371 -59622061 + L1ME3 LINE L1 5867 6053 -109 1 1634 606 59 0 47 chr1 137573915 137574022 -59621410 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1634 594 0 0 0 chr1 137575008 137575074 -59620358 + (GTGTG)n Simple_repeat Simple_repeat 1 66 0 1 1634 1191 85 0 0 chr1 137575349 137575514 -59619918 + (TG)n Simple_repeat Simple_repeat 2 166 0 1 1634 219 160 18 91 chr1 137575514 137575569 -59619863 - PB1D10 SINE Alu -9 108 58 1 1634 629 318 77 33 chr1 137575883 137576312 -59619120 + ORSL-2b DNA Tip100 61 508 0 1 1634 285 292 9 119 chr1 137576899 137577008 -59618424 + PB1 SINE Alu 18 114 -13 1 1634 201 74 0 0 chr1 137577009 137577036 -59618396 + (CAAT)n Simple_repeat Simple_repeat 1 27 0 1 1634 276 260 123 0 chr1 137577189 137577343 -59618089 + L1MC4 LINE L1 7719 7891 -151 1 1634 435 19 0 0 chr1 137577408 137577460 -59617972 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1634 186 301 226 44 chr1 137578986 137579167 -59616265 + L3 LINE CR1 4275 4488 -1 1 1634 356 315 20 47 chr1 137579313 137579463 -59615969 + MER5B DNA MER1_type 1 146 -32 1 1634 180 0 0 0 chr1 137579763 137579783 -59615649 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1634 1401 18 0 12 chr1 137579785 137579953 -59615479 - B2_Mm2 SINE B2 -29 166 1 1 1634 347 238 48 0 chr1 137579965 137580070 -59615362 - PB1D10 SINE Alu -7 110 1 1 1634 429 288 30 0 chr1 137580070 137580202 -59615230 + L1MB3 LINE L1 6005 6140 -43 1 1634 323 302 46 11 chr1 137580204 137580291 -59615141 + B1F1 SINE Alu 2 91 -58 1 1634 1378 83 6 6 chr1 137580305 137580486 -59614946 - B2_Mm2 SINE B2 -14 181 1 1 1634 601 171 54 0 chr1 137580526 137580637 -59614795 + B1_Mur2 SINE Alu 33 149 0 1 1634 850 286 122 39 chr1 137580801 137581340 -59614092 + L1M3 LINE L1 3798 4381 -1759 1 1634 21 0 0 0 chr1 137581811 137581832 -59613600 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 471 73 0 0 chr1 137581835 137581903 -59613529 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1634 24 0 0 0 chr1 137582847 137582871 -59612561 + GC_rich Low_complexity Low_complexity 1 24 0 1 1634 387 0 0 0 chr1 137584095 137584138 -59611294 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1634 369 0 0 0 chr1 137584138 137584178 -59611254 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1634 26 0 0 0 chr1 137584744 137584770 -59610662 + GC_rich Low_complexity Low_complexity 1 26 0 1 1634 339 285 181 7 chr1 137585951 137586089 -59609343 + MIR SINE MIR 87 248 -14 1 1634 183 229 42 0 chr1 137586060 137586108 -59609324 + L2a LINE L2 3377 3426 0 1 1634 530 198 0 0 chr1 137586204 137586285 -59609147 + PB1D10 SINE Alu 11 91 -26 1 1634 792 222 109 59 chr1 137588565 137588804 -59606628 - B4 SINE B4 -1 291 41 1 1634 1160 82 7 0 chr1 137588904 137589051 -59606381 - B1_Mus1 SINE Alu 0 148 1 1 1634 1387 90 0 16 chr1 137589095 137589286 -59606146 + B2_Mm2 SINE B2 1 188 -7 1 1634 868 244 17 0 chr1 137589295 137589467 -59605965 + B3 SINE B2 4 178 -38 1 1634 1338 69 35 0 chr1 137589487 137589660 -59605772 - B2_Mm1t SINE B2 -14 179 1 1 1634 516 16 0 0 chr1 137589680 137589741 -59605691 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 1 1634 656 293 7 7 chr1 137589764 137589905 -59605527 - RSINE1 SINE B4 -11 154 14 1 1634 187 387 39 39 chr1 137589924 137590053 -59605379 - MIR SINE MIR -105 157 29 1 1634 774 148 68 30 chr1 137590277 137590409 -59605023 + B1_Mus1 SINE Alu 1 137 -11 1 1634 334 247 26 0 chr1 137590502 137590579 -59604853 + MIRb SINE MIR 120 198 -70 1 1634 327 350 56 11 chr1 137590650 137590829 -59604603 - MIR3 SINE MIR -7 201 15 1 1634 482 340 55 6 chr1 137591116 137591279 -59604153 + MER45A DNA Tip100 1 171 -7 2 1634 440 278 0 18 chr1 137591423 137591533 -59603899 + PB1 SINE Alu 3 110 -17 2 1634 294 29 0 0 chr1 137591640 137591675 -59603757 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 2 1634 329 277 0 0 chr1 137591679 137591761 -59603671 + B1_Mur2 SINE Alu 59 140 -9 2 1634 381 95 0 0 chr1 137591763 137591826 -59603606 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 2 1634 586 160 132 37 chr1 137591935 137592071 -59603361 - B1F2 SINE Alu 0 149 1 2 1634 249 229 114 0 chr1 137592217 137592287 -59603145 - B1F SINE Alu 0 149 72 2 1634 322 217 72 0 chr1 137592225 137592294 -59603138 - ID_B1 SINE B4 -8 216 143 2 1634 625 248 59 0 chr1 137592309 137592462 -59602970 - RSINE1 SINE B4 0 165 4 2 1634 617 278 72 43 chr1 137592609 137592887 -59602545 - ORR1E LTR MaLR -1 358 73 2 1634 2152 121 48 74 chr1 137592909 137592930 -59602502 + ORR1C2 LTR MaLR 1 21 -363 2 1634 1375 100 336 0 chr1 137592930 137593171 -59602261 + RLTRETN_Mm LTR ERVK 1 322 0 2 1634 2152 121 48 74 chr1 137593171 137593543 -59601889 + ORR1C2 LTR MaLR 22 384 0 2 1634 879 296 41 51 chr1 137594086 137594289 -59601143 - B4 SINE B4 0 292 96 2 1634 531 291 14 7 chr1 137594289 137594431 -59601001 - RSINE1 SINE B4 -19 146 4 2 1634 879 296 41 51 chr1 137594431 137594522 -59600910 - B4 SINE B4 -197 95 1 2 1634 1056 120 171 5 chr1 137594542 137594735 -59600697 + URR1B DNA MER1_type 1 225 0 2 1634 924 109 80 0 chr1 137596403 137596540 -59598892 + B1_Mus1 SINE Alu 1 148 0 2 1634 234 191 0 0 chr1 137596540 137596587 -59598845 + GA-rich Low_complexity Low_complexity 2 48 0 2 1634 1571 47 5 20 chr1 137596933 137597128 -59598304 - B2_Mm1t SINE B2 0 193 2 2 1634 328 279 38 0 chr1 137597511 137597590 -59597842 - ID4_ SINE ID -1 82 1 2 1634 450 0 0 0 chr1 137597748 137597798 -59597634 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1634 1034 276 79 30 chr1 137597825 137598213 -59597219 - MLT2B4 LTR ERVL -66 398 1 2 1634 349 297 226 0 chr1 137598418 137598573 -59596859 - L1ME3A LINE L1 -311 5862 5673 2 1634 2340 100 16 3 chr1 137598575 137598897 -59596535 - ORR1A3 LTR MaLR 0 326 1 2 1634 273 246 16 0 chr1 137598912 137598973 -59596459 - ID4_ SINE ID -20 63 2 2 1634 928 261 49 30 chr1 137599363 137599730 -59595702 - L1MB8 LINE L1 -5 6173 5796 2 1634 542 203 8 99 chr1 137599828 137599880 -59595552 + PB1D7 SINE Alu 1 48 -72 2 1634 1414 70 11 0 chr1 137599880 137600067 -59595365 + B2_Mm1t SINE B2 2 190 -3 2 1634 542 203 8 99 chr1 137600067 137600145 -59595287 + PB1D7 SINE Alu 49 119 -1 2 1634 381 215 43 61 chr1 137600164 137600422 -59595010 + L1MEg LINE L1 1882 2284 -4818 2 1634 207 125 0 0 chr1 137600440 137600480 -59594952 + (GCTG)n Simple_repeat Simple_repeat 2 41 0 2 1634 918 245 4 84 chr1 137600816 137601011 -59594421 + B3 SINE B2 1 184 -32 2 1634 910 186 5 27 chr1 137601011 137601199 -59594233 - B2_Mm2 SINE B2 -10 185 2 2 1634 918 245 4 84 chr1 137601199 137601230 -59594202 + B3 SINE B2 185 209 -7 2 1634 235 306 0 18 chr1 137601251 137601361 -59594071 - L1MEc LINE L1 -4069 2331 2224 2 1634 224 135 58 0 chr1 137601370 137601422 -59594010 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1634 1735 50 31 0 chr1 137601464 137601686 -59593746 - L1_Mus1 LINE L1 -21 6546 6318 2 1634 478 288 77 23 chr1 137601823 137602043 -59593389 - L1MEc LINE L1 -4351 2049 1818 2 1634 387 89 0 0 chr1 137602047 137602103 -59593329 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1634 491 282 9 0 chr1 137602120 137602230 -59593202 - RSINE1 SINE B4 -43 122 12 2 1634 235 227 30 15 chr1 137602438 137602505 -59592927 - L1MB8 LINE L1 -3 6175 6108 2 1634 547 136 23 0 chr1 137602536 137602624 -59592808 + B1_Mur4 SINE Alu 1 90 -60 2 1634 637 254 15 0 chr1 137602629 137602759 -59592673 - RSINE1 SINE B4 -31 134 3 2 1634 336 320 34 39 chr1 137602780 137602959 -59592473 - L1MB8 LINE L1 -152 6026 5849 2 1634 1390 89 16 10 chr1 137603002 137603194 -59592238 - B2_Mm2 SINE B2 -1 194 2 2 1634 305 293 0 35 chr1 137603232 137603317 -59592115 - ID4 SINE ID 0 83 2 2 1634 645 231 0 76 chr1 137603382 137603527 -59591905 - RSINE1 SINE B4 0 165 32 2 1634 2157 178 21 235 chr1 137603602 137604231 -59591201 + RMER19C LTR ERVK 1 471 -140 2 1634 1119 68 0 52 chr1 137604231 137604247 -59591185 - B1_Mus1 SINE Alu -1 147 137 2 1634 1088 116 0 6 chr1 137604247 137604420 -59591012 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 2 1634 1119 68 0 52 chr1 137604420 137604557 -59590875 - B1_Mus1 SINE Alu -12 136 2 2 1634 2157 178 21 235 chr1 137604557 137604705 -59590727 + RMER19C LTR ERVK 472 611 0 2 1634 410 109 16 0 chr1 137604710 137604774 -59590658 - ORR1A4 LTR MaLR 0 329 265 2 1634 2291 155 53 21 chr1 137604790 137605226 -59590206 - RLTR16 LTR ERVK -55 450 1 2 1634 1414 189 77 142 chr1 137605226 137605580 -59589852 - ORR1B1 LTR MaLR -61 333 5 2 1634 1787 105 68 13 chr1 137605579 137605887 -59589545 - ORR1B1-int LTR MaLR -54 1455 1131 2 1634 1654 133 142 24 chr1 137605914 137606244 -59589188 - ORR1B1-int LTR MaLR -1592 371 3 2 1634 294 89 0 43 chr1 137606262 137606309 -59589123 - ORR1B1 LTR MaLR -284 45 1 2 1634 230 264 95 27 chr1 137606316 137606390 -59589042 - PB1D10 SINE Alu -37 80 2 2 1634 385 263 92 10 chr1 137606634 137606830 -59588602 - L1MEc LINE L1 -4993 1407 1196 2 1634 969 313 32 32 chr1 137606849 137607126 -59588306 + B4A SINE B4 15 291 -1 2 1634 1249 41 7 0 chr1 137607217 137607362 -59588070 - B1_Mus2 SINE Alu 0 147 2 2 1634 490 308 107 13 chr1 137607418 137607717 -59587715 - L1MEc LINE L1 -5342 1058 732 2 1634 359 333 210 6 chr1 137608011 137608192 -59587240 - L1MEc LINE L1 -6047 353 136 2 1634 403 167 11 11 chr1 137608202 137608293 -59587139 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1634 292 226 18 40 chr1 137608293 137608394 -59587038 - B4A SINE B4 0 292 202 2 1634 307 167 0 0 chr1 137608509 137608557 -59586875 + B1_Mur4 SINE Alu 9 56 -94 2 1634 216 130 0 0 chr1 137608557 137608603 -59586829 + (CTGGGG)n Simple_repeat Simple_repeat 5 50 0 2 1634 613 241 42 122 chr1 137608604 137608793 -59586639 + B3A SINE B2 2 175 -23 2 1634 411 193 12 35 chr1 137608825 137608911 -59586521 + PB1D10 SINE Alu 5 88 -29 2 1634 226 250 0 0 chr1 137608912 137608968 -59586464 + L1MB8 LINE L1 5281 5336 -810 2 1634 562 220 66 25 chr1 137608974 137609095 -59586337 + B1_Mur1 SINE Alu 23 148 -1 2 1634 980 296 45 52 chr1 137609096 137609464 -59585968 + L1MB8 LINE L1 5316 5686 -492 2 1634 378 0 0 0 chr1 137609464 137609506 -59585926 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 1634 980 296 45 52 chr1 137609506 137609654 -59585778 + L1MB8 LINE L1 5687 5828 -350 2 1634 997 166 37 126 chr1 137609654 137609827 -59585605 + B3 SINE B2 1 166 -50 2 1634 420 20 0 0 chr1 137609827 137609876 -59585556 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1634 808 166 37 126 chr1 137609876 137609894 -59585538 + B2_Mm2 SINE B2 165 176 -19 2 1634 1037 244 5 0 chr1 137609894 137610103 -59585329 + B3 SINE B2 1 210 -6 2 1634 808 166 37 126 chr1 137610103 137610124 -59585308 + B2_Mm2 SINE B2 177 195 0 2 1634 263 295 98 34 chr1 137610127 137610362 -59585070 + L1MB8 LINE L1 5814 6063 -121 2 1634 964 83 68 0 chr1 137610373 137610506 -59584926 + B1_Mus1 SINE Alu 1 142 -6 2 1634 295 121 17 17 chr1 137610514 137610573 -59584859 + GA-rich Low_complexity Low_complexity 3 61 0 2 1634 200 220 60 0 chr1 137610871 137610921 -59584511 - L2a LINE L2 -35 3391 3339 2 1634 362 261 53 71 chr1 137611295 137611439 -59583993 - MLT1A LTR MaLR -195 195 41 2 1634 294 179 0 18 chr1 137612299 137612356 -59583076 - RCHARR1 DNA MER1_type 0 974 919 2 1634 350 237 0 0 chr1 137612381 137612457 -59582975 - RSINE1 SINE B4 0 165 90 2 1634 2371 137 30 15 chr1 137612460 137612853 -59582579 + MTB_Mm LTR MaLR 1 399 -8 2 1634 672 219 72 15 chr1 137612908 137613102 -59582330 - RCHARR1 DNA MER1_type -43 931 727 2 1634 1049 55 7 33 chr1 137613102 137613177 -59582255 + B1_Mus1 SINE Alu 2 76 -72 2 1634 4274 40 0 4 chr1 137613177 137613698 -59581734 - MURVY-LTR LTR ERV1 0 519 1 2 1634 1049 55 7 33 chr1 137613698 137613773 -59581659 + B1_Mus1 SINE Alu 77 148 0 2 1634 1076 253 185 59 chr1 137613824 137614083 -59581349 - RCHARR1 DNA MER1_type -237 737 476 2 1634 1042 101 0 7 chr1 137614083 137614232 -59581200 + B1_Mus1 SINE Alu 1 148 0 2 1634 1076 253 185 59 chr1 137614232 137614447 -59580985 - RCHARR1 DNA MER1_type -499 475 203 2 1634 779 222 99 11 chr1 137614985 137615176 -59580256 - B3 SINE B2 -7 209 2 2 1634 1175 35 0 14 chr1 137615585 137615731 -59579701 + B1_Mus1 SINE Alu 5 148 0 2 1634 234 226 0 101 chr1 137615832 137615901 -59579531 + PB1D9 SINE Alu 2 63 -57 2 1634 238 208 0 0 chr1 137615868 137615916 -59579516 + B1_Mur2 SINE Alu 100 147 -2 2 1634 356 242 9 95 chr1 137616001 137616106 -59579326 - B1_Mur4 SINE Alu 0 150 55 2 1634 285 194 107 40 chr1 137617437 137617512 -59577920 + B1_Mur2 SINE Alu 63 142 -7 2 1634 306 0 0 0 chr1 137617513 137617547 -59577885 + (CCAA)n Simple_repeat Simple_repeat 4 37 0 2 1634 364 218 0 33 chr1 137618386 137618476 -59576956 + MLT1A1 LTR MaLR 322 408 0 2 1634 489 121 0 0 chr1 137618662 137618745 -59576687 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1634 739 307 10 68 chr1 137618766 137619074 -59576358 - B4A SINE B4 0 292 3 2 1634 329 246 0 0 chr1 137619208 137619273 -59576159 + ID_B1 SINE B4 106 170 -54 2 1634 365 362 0 8 chr1 137619351 137619468 -59575964 - RSINE1 SINE B4 -47 118 3 2 1634 914 106 0 7 chr1 137619913 137620055 -59575377 + (TTCC)n Simple_repeat Simple_repeat 2 142 0 2 1634 345 143 143 0 chr1 137620096 137620159 -59575273 - ID_B1 SINE B4 -18 206 135 2 1634 234 295 112 19 chr1 137620511 137620618 -59574814 - B1F SINE Alu -32 117 1 2 1634 660 283 0 0 chr1 137620618 137620698 -59574734 - ID SINE ID -143 81 2 2 1634 482 191 0 0 chr1 137621077 137621161 -59574271 - B1_Mur2 SINE Alu -45 104 21 2 1634 281 233 17 112 chr1 137621161 137621193 -59574239 - MT2B LTR ERVL -344 257 153 2 1634 387 105 0 0 chr1 137621841 137621898 -59573534 + (T)n Simple_repeat Simple_repeat 1 57 0 2 1634 1144 68 0 0 chr1 137621898 137622045 -59573387 - B1_Mm SINE Alu 0 147 1 2 1634 811 87 39 23 chr1 137622341 137622470 -59572962 + B1_Mur3 SINE Alu 19 149 0 2 1634 650 254 159 68 chr1 137622938 137623131 -59572301 - MTD LTR MaLR 0 419 211 2 1634 387 0 0 0 chr1 137623131 137623174 -59572258 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 2 1634 801 146 85 0 chr1 137623177 137623307 -59572125 - B1_Mus2 SINE Alu -6 141 1 2 1634 650 254 159 68 chr1 137623307 137623493 -59571939 - MTD LTR MaLR -209 210 6 2 1634 252 0 0 0 chr1 137623826 137623854 -59571578 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1634 411 56 0 0 chr1 137623854 137623907 -59571525 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1634 348 274 61 23 chr1 137624042 137624173 -59571259 - B1F SINE Alu -2 147 12 3 1634 238 271 92 23 chr1 137624549 137624636 -59570796 + MT2B LTR ERVL 186 278 -323 3 1634 562 135 21 10 chr1 137624567 137624664 -59570768 + B1F2 SINE Alu 52 149 0 3 1634 463 126 523 8 chr1 137624870 137624998 -59570434 + B2_Mm2 SINE B2 2 195 0 3 1635 387 0 0 0 chr1 137626257 137626300 -59569132 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1635 486 0 0 0 chr1 137626870 137626924 -59568508 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1635 314 279 125 0 chr1 137627503 137627607 -59567825 + PB1D10 SINE Alu 1 117 0 3 1635 248 281 30 48 chr1 137630265 137630374 -59565058 - B1F1 SINE Alu -2 118 2 3 1635 22 0 0 0 chr1 137631260 137631282 -59564150 + GC_rich Low_complexity Low_complexity 1 22 0 3 1635 293 301 23 4 chr1 137631608 137631748 -59563684 + MIR SINE MIR 34 166 -102 3 1635 1317 32 0 0 chr1 137633990 137634148 -59561284 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 3 1635 726 58 0 37 chr1 137634148 137634255 -59561177 - B1_Mus1 SINE Alu -12 136 34 3 1635 303 350 24 0 chr1 137634258 137634381 -59561051 - MIRc SINE MIR -119 149 24 3 1635 253 184 21 75 chr1 137634652 137634746 -59560686 + G-rich Low_complexity Low_complexity 5 93 0 3 1635 243 251 142 33 chr1 137634775 137634867 -59560565 - B1F SINE Alu 0 117 17 3 1635 611 291 6 28 chr1 137634969 137635146 -59560286 + BGLII_B LTR ERVK 231 403 -38 3 1635 915 178 0 0 chr1 137635595 137635811 -59559621 + (CA)n Simple_repeat Simple_repeat 1 216 0 3 1635 188 143 0 58 chr1 137636295 137636347 -59559085 + G-rich Low_complexity Low_complexity 5 53 0 3 1635 1134 68 0 0 chr1 137636831 137636977 -59558455 + B1_Mm SINE Alu 2 147 0 3 1635 281 47 0 23 chr1 137637017 137637061 -59558371 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 3 1635 1290 57 22 28 chr1 137637061 137637242 -59558190 - B2_Mm2 SINE B2 -15 180 1 3 1635 279 0 0 0 chr1 137637261 137637292 -59558140 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1635 1029 132 49 6 chr1 137638281 137638332 -59557100 + URR1B DNA MER1_type 35 91 -134 3 1635 549 44 0 0 chr1 137638332 137638400 -59557032 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1635 1029 132 49 6 chr1 137638400 137638531 -59556901 + URR1B DNA MER1_type 92 225 0 3 1635 1449 44 0 0 chr1 137638548 137639008 -59556424 + (TG)n Simple_repeat Simple_repeat 1 460 0 3 1635 389 390 30 0 chr1 137641010 137641210 -59554222 - MIRb SINE MIR -8 260 55 3 1635 428 212 61 0 chr1 137642127 137642226 -59553206 + PB1D10 SINE Alu 8 112 -5 3 1635 1055 267 35 14 chr1 137642235 137642520 -59552912 + B4A SINE B4 2 292 0 3 1635 228 135 0 0 chr1 137642535 137642572 -59552860 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1635 266 0 29 0 chr1 137642572 137642606 -59552826 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1635 307 235 61 12 chr1 137642708 137642790 -59552642 - MIR3 SINE MIR -5 203 118 3 1635 1076 23 0 8 chr1 137643731 137643863 -59551569 + (TTTCC)n Simple_repeat Simple_repeat 5 135 0 3 1635 261 40 0 106 chr1 137643865 137643950 -59551482 + (TTC)n Simple_repeat Simple_repeat 2 77 0 3 1635 636 176 96 30 chr1 137643964 137644099 -59551333 - B1_Mur4 SINE Alu 0 150 7 3 1635 1139 116 11 17 chr1 137644131 137644307 -59551125 + B2_Mm2 SINE B2 3 177 -18 3 1635 259 290 58 44 chr1 137644956 137645093 -59550339 - MIRb SINE MIR -111 157 19 3 1635 246 181 95 27 chr1 137645051 137645125 -59550307 + MIR SINE MIR 37 115 -147 3 1635 578 205 33 0 chr1 137645564 137645686 -59549746 + B1_Mus1 SINE Alu 12 137 -11 3 1635 513 0 0 0 chr1 137649166 137649223 -59546209 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1635 474 274 215 0 chr1 137649838 137650075 -59545357 - L1MC4 LINE L1 -4985 1230 943 3 1635 189 0 0 0 chr1 137650544 137650565 -59544867 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1635 203 277 103 56 chr1 137650818 137650944 -59544488 - MER5B DNA MER1_type -38 140 9 3 1635 219 296 77 17 chr1 137651102 137651219 -59544213 - L3 LINE CR1 -257 4232 4109 3 1635 348 212 0 0 chr1 137651273 137651343 -59544089 + ID4 SINE ID 1 70 -82 3 1635 344 294 50 8 chr1 137651283 137651403 -59544029 + ID_B1 SINE B4 11 135 -89 3 1635 323 276 79 19 chr1 137651821 137651944 -59543488 - MIRb SINE MIR -38 170 43 3 1635 353 264 37 81 chr1 137651928 137652022 -59543410 + MIR3 SINE MIR 76 162 -46 3 1635 632 216 18 41 chr1 137652022 137652191 -59543241 - MER5A1 DNA MER1_type -1 165 1 3 1635 353 264 37 81 chr1 137652191 137652232 -59543200 + MIR3 SINE MIR 163 204 -4 3 1635 463 278 0 9 chr1 137652665 137652774 -59542658 - PB1D10 SINE Alu -2 115 8 3 1635 427 241 11 0 chr1 137652794 137652881 -59542551 - PB1D10 SINE Alu -7 110 23 3 1635 588 281 32 2 chr1 137652938 137653127 -59542305 + B4A SINE B4 89 292 0 3 1635 2477 263 43 119 chr1 137654599 137655315 -59540117 - RCHARR1 DNA MER1_type -1 973 355 3 1635 809 154 0 14 chr1 137655315 137655453 -59539979 - B1_Mur4 SINE Alu -13 137 2 3 1635 2477 263 43 119 chr1 137655453 137655790 -59539642 - RCHARR1 DNA MER1_type -620 354 1 3 1635 1301 105 11 0 chr1 137655827 137656017 -59539415 + B2_Mm1t SINE B2 1 192 -1 3 1635 308 203 29 0 chr1 137657046 137657115 -59538317 - MER5A DNA MER1_type -58 131 61 3 1635 493 241 8 8 chr1 137657545 137657662 -59537770 + PB1D10 SINE Alu 1 117 0 3 1635 927 205 28 28 chr1 137657894 137658110 -59537322 - B3 SINE B2 0 216 1 3 1635 426 254 117 17 chr1 137658366 137658486 -59536946 - RSINE1 SINE B4 -22 143 12 3 1635 516 284 30 0 chr1 137658498 137658632 -59536800 - B1F1 SINE Alu -10 139 2 3 1635 623 115 133 0 chr1 137658788 137658901 -59536531 + B1_Mus1 SINE Alu 10 137 -11 3 1635 329 0 0 24 chr1 137658901 137658943 -59536489 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 1635 625 209 108 0 chr1 137659394 137659523 -59535909 - B1F2 SINE Alu 0 149 7 3 1635 35 54 0 0 chr1 137659531 137659587 -59535845 + AT_rich Low_complexity Low_complexity 1 56 0 3 1635 443 239 7 118 chr1 137659609 137659761 -59535671 - ID_B1 SINE B4 0 224 90 3 1635 779 164 8 0 chr1 137659636 137659764 -59535668 - B1_Mus1 SINE Alu -13 135 7 3 1635 385 230 0 103 chr1 137659658 137659784 -59535648 - MT2B LTR ERVL -337 264 152 3 1635 500 108 60 0 chr1 137659957 137660040 -59535392 + B2_Mm2 SINE B2 5 92 -103 3 1635 250 191 0 117 chr1 137660014 137660091 -59535341 + B3 SINE B2 149 216 0 3 1635 871 264 77 35 chr1 137664665 137664952 -59530480 + MER2 DNA MER2_type 40 338 -7 3 1635 181 254 73 0 chr1 137666834 137666889 -59528543 - L2b LINE L2 -78 3297 3239 3 1635 275 343 55 50 chr1 137668575 137668793 -59526639 - MIRb SINE MIR -40 222 4 3 1635 261 302 58 0 chr1 137669011 137669097 -59526335 + PB1D9 SINE Alu 20 110 -10 3 1635 381 22 0 0 chr1 137669441 137669487 -59525945 + (TTA)n Simple_repeat Simple_repeat 1 46 0 3 1635 249 108 0 0 chr1 137670092 137670129 -59525303 + (TTG)n Simple_repeat Simple_repeat 3 39 0 3 1635 841 158 11 0 chr1 137670254 137670431 -59525001 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1635 304 279 2 33 chr1 137670467 137670569 -59524863 + PB1D10 SINE Alu 1 95 -52 3 1635 345 305 0 0 chr1 137670572 137670654 -59524778 + ID4_ SINE ID 2 83 0 3 1635 279 314 14 0 chr1 137670934 137671004 -59524428 - ID4 SINE ID -6 77 7 3 1635 294 73 0 0 chr1 137671013 137671054 -59524378 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 3 1635 1120 211 5 5 chr1 137671067 137671277 -59524155 - B3 SINE B2 -2 214 5 3 1635 308 320 132 28 chr1 137671605 137671817 -59523615 + MIRb SINE MIR 12 245 -23 3 1635 2544 118 97 5 chr1 137672149 137672531 -59522901 - MTC LTR MaLR 0 421 5 3 1635 227 294 81 52 chr1 137673165 137673337 -59522095 + MTB_Mm LTR MaLR 119 295 -112 3 1635 797 30 10 0 chr1 137673559 137673659 -59521773 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 1635 188 341 46 61 chr1 137673763 137673894 -59521538 + MIRm SINE MIR 22 150 -126 3 1635 440 226 8 108 chr1 137674304 137674433 -59520999 - PB1D10 SINE Alu -1 116 1 3 1635 264 315 7 106 chr1 137674781 137674923 -59520509 - MLT1D LTR MaLR -58 447 320 3 1635 556 276 10 98 chr1 137676190 137676383 -59519049 - ID_B1 SINE B4 -48 176 1 3 1635 528 16 0 0 chr1 137676456 137676517 -59518915 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1635 533 274 8 0 chr1 137676518 137676635 -59518797 - RSINE1 SINE B4 -46 119 2 3 1635 255 280 99 10 chr1 137677364 137677465 -59517967 - MIRc SINE MIR -46 222 113 3 1635 468 0 0 0 chr1 137677679 137677731 -59517701 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 3 1635 248 319 103 16 chr1 137678377 137678496 -59516936 + MIRb SINE MIR 47 160 -102 3 1635 1277 315 92 14 chr1 137678504 137678685 -59516747 - MER82 DNA MER2_type -21 632 441 3 1635 543 287 192 6 chr1 137678685 137678867 -59516565 - B3 SINE B2 0 216 1 3 1635 1277 315 92 14 chr1 137678867 137679264 -59516168 - MER82 DNA MER2_type -213 440 10 3 1635 246 314 125 28 chr1 137679510 137679654 -59515778 - MIRc SINE MIR -40 228 71 3 1635 357 322 63 67 chr1 137679950 137680173 -59515259 - MLT1A0 LTR MaLR -76 289 68 3 1635 254 50 0 24 chr1 137680203 137680244 -59515188 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1635 545 103 235 10 chr1 137680250 137680348 -59515084 - PB1D9 SINE Alu 0 120 1 3 1635 1439 94 10 5 chr1 137680350 137680543 -59514889 - B2_Mm2 SINE B2 0 195 2 3 1635 447 283 50 8 chr1 137680862 137680983 -59514449 + ID_B1 SINE B4 89 214 -10 4 1635 1469 280 100 78 chr1 137681003 137681475 -59513957 - L1MB3 LINE L1 -21 6162 5669 4 1635 376 160 110 83 chr1 137681475 137681584 -59513848 - PB1D7 SINE Alu -8 112 1 4 1635 1469 280 100 78 chr1 137681584 137681665 -59513767 - L1MB3 LINE L1 -515 5668 5599 4 1635 657 295 29 14 chr1 137681665 137681875 -59513557 - B3 SINE B2 -3 213 1 4 1635 1469 280 100 78 chr1 137681875 137682015 -59513417 - L1MB3 LINE L1 -585 5598 5437 4 1635 341 309 18 26 chr1 137682015 137682128 -59513304 - PB1D10 SINE Alu -5 112 1 4 1635 1469 271 30 101 chr1 137682128 137682309 -59513123 - L1MB3 LINE L1 -747 5436 5273 4 1635 354 284 0 0 chr1 137682338 137682419 -59513013 - ID4 SINE ID 0 83 3 4 1635 226 206 16 16 chr1 137682485 137682549 -59512883 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1635 441 267 65 28 chr1 137682569 137682677 -59512755 - B1F SINE Alu -33 116 5 4 1635 267 353 7 93 chr1 137682578 137682728 -59512704 - MT2B2 LTR ERVL -324 260 124 4 1635 269 244 47 47 chr1 137682714 137682788 -59512644 + MLT1A1 LTR MaLR 13 86 -288 4 1635 342 158 117 13 chr1 137682788 137682865 -59512567 + PB1D9 SINE Alu 3 87 -33 4 1635 441 0 0 0 chr1 137682865 137682914 -59512518 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1635 729 34 0 0 chr1 137682920 137683008 -59512424 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 1635 404 281 8 42 chr1 137683103 137683222 -59512210 + B1F SINE Alu 11 125 -24 4 1635 261 0 0 0 chr1 137683277 137683306 -59512126 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1635 290 327 9 18 chr1 137683394 137683503 -59511929 + MLT1A1 LTR MaLR 296 403 -5 4 1635 207 162 0 0 chr1 137683505 137683542 -59511890 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 4 1635 265 234 18 4 chr1 137683933 137683997 -59511435 - ID4 SINE ID -11 72 10 4 1635 413 292 47 0 chr1 137684004 137684110 -59511322 - PB1D10 SINE Alu -5 112 2 4 1635 522 0 0 0 chr1 137684640 137684698 -59510734 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1635 207 162 0 0 chr1 137684858 137684895 -59510537 + (CAG)n Simple_repeat Simple_repeat 3 39 0 4 1635 789 153 7 71 chr1 137684896 137685051 -59510381 + B1_Mur4 SINE Alu 6 150 0 4 1635 204 40 0 0 chr1 137685612 137685637 -59509795 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1635 583 258 8 0 chr1 137685758 137685878 -59509554 + RSINE1 SINE B4 16 136 -29 4 1635 384 22 0 0 chr1 137685881 137685926 -59509506 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 1635 656 24 79 0 chr1 137685926 137686053 -59509379 + (CA)n Simple_repeat Simple_repeat 1 137 0 4 1635 371 349 17 83 chr1 137686196 137686377 -59509055 - Charlie1a DNA MER1_type -1183 272 104 4 1635 180 0 0 0 chr1 137688113 137688133 -59507299 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 4 1635 327 49 0 0 chr1 137688605 137688646 -59506786 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1635 727 151 76 0 chr1 137688676 137688795 -59506637 - B1_Mus2 SINE Alu -19 128 1 4 1635 339 307 50 21 chr1 137689324 137689464 -59505968 + MER5A DNA MER1_type 46 189 0 4 1635 528 30 0 0 chr1 137689689 137689755 -59505677 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1635 252 0 0 0 chr1 137689755 137689783 -59505649 + (TGG)n Simple_repeat Simple_repeat 3 30 0 4 1635 204 194 0 0 chr1 137689982 137690018 -59505414 + (CGGGG)n Simple_repeat Simple_repeat 3 38 0 4 1635 308 304 42 35 chr1 137690878 137691021 -59504411 + MIRb SINE MIR 46 189 -79 4 1635 349 164 110 0 chr1 137691026 137691099 -59504333 + ID4_ SINE ID 3 83 0 4 1635 604 297 88 17 chr1 137691106 137691346 -59504086 - MIR SINE MIR -3 259 3 4 1635 299 267 93 0 chr1 137691949 137692035 -59503397 - PB1 SINE Alu -33 94 1 4 1635 1024 292 138 20 chr1 137693051 137693450 -59501982 - MLT1D LTR MaLR -3 502 57 4 1635 468 0 0 0 chr1 137694034 137694086 -59501346 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1635 527 237 179 21 chr1 137694414 137694604 -59500828 + B4A SINE B4 55 274 -18 4 1635 561 88 0 0 chr1 137694656 137694736 -59500696 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 1635 805 143 7 14 chr1 137694739 137694756 -59500676 - B2_Mm1t SINE B2 -16 177 161 4 1635 477 0 0 0 chr1 137694756 137694809 -59500623 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 4 1635 805 143 7 14 chr1 137694809 137694933 -59500499 - B2_Mm1t SINE B2 -33 160 37 4 1635 816 146 0 71 chr1 137698304 137698459 -59496973 + B1_Mur4 SINE Alu 7 150 0 4 1635 304 321 11 107 chr1 137698307 137698485 -59496947 + B4A SINE B4 94 254 -38 4 1635 765 76 0 0 chr1 137698503 137698608 -59496824 + (GAA)n Simple_repeat Simple_repeat 2 106 0 4 1635 255 330 8 84 chr1 137700912 137701031 -59494401 - PB1D10 SINE Alu -6 111 2 4 1635 886 146 263 0 chr1 137702539 137702710 -59492722 - B3 SINE B2 0 216 1 4 1635 540 0 0 0 chr1 137702893 137702953 -59492479 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 4 1635 720 313 116 47 chr1 137703046 137703286 -59492146 - Lx7 LINE L1 -2 7694 7439 4 1635 692 198 48 0 chr1 137703286 137703412 -59492020 + B1_Mur2 SINE Alu 2 133 -16 4 1635 720 313 116 47 chr1 137703412 137703765 -59491667 - Lx7 LINE L1 -258 7438 7060 4 1635 271 131 40 6 chr1 137703783 137703841 -59491591 + B1F SINE Alu 91 148 -1 4 1635 345 285 58 14 chr1 137704419 137704558 -59490874 - MIRc SINE MIR -25 243 99 4 1635 202 235 78 0 chr1 137705855 137705906 -59489526 - L2b LINE L2 -216 3159 3105 4 1635 180 310 17 17 chr1 137706589 137706648 -59488784 + MIR3 SINE MIR 142 200 -8 4 1635 672 65 130 0 chr1 137708479 137708587 -59486845 + B1_Mus1 SINE Alu 27 148 0 4 1635 212 0 36 0 chr1 137708590 137708618 -59486814 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1635 342 123 0 0 chr1 137709025 137709082 -59486350 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1635 279 0 0 0 chr1 137709082 137709112 -59486320 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1635 378 292 117 31 chr1 137709795 137710020 -59485412 - MIR SINE MIR -8 260 12 4 1635 593 144 0 46 chr1 137711571 137711691 -59483741 - B1_Mur4 SINE Alu -34 115 2 4 1635 244 330 9 60 chr1 137711760 137711876 -59483556 + Charlie18a DNA MER1_type 233 342 0 4 1635 260 270 95 0 chr1 137712336 137712410 -59483022 - ID4_ SINE ID -2 81 1 4 1635 748 312 106 22 chr1 137712526 137712847 -59482585 + Tigger7 DNA MER2_type 9 356 -2135 4 1635 462 235 49 0 chr1 137712879 137712981 -59482451 - B1F SINE Alu -29 120 14 4 1635 327 344 37 111 chr1 137712981 137713092 -59482340 - ID_B1 SINE B4 -23 198 2 4 1635 429 261 111 7 chr1 137713110 137713245 -59482187 + Tigger7 DNA MER2_type 2343 2491 0 4 1635 312 159 0 125 chr1 137714426 137714498 -59480934 - MurSatRep1 Unknown Unknown -1854 283 221 4 1635 519 17 0 0 chr1 137717136 137717196 -59478236 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1635 225 282 168 0 chr1 137720103 137720234 -59475198 + L2a LINE L2 3271 3423 -3 4 1635 498 263 128 10 chr1 137721340 137721536 -59473896 + MER20 DNA MER1_type 1 219 0 4 1635 364 261 124 0 chr1 137721565 137721726 -59473706 - Charlie5 DNA MER1_type -27 2597 2417 4 1635 606 109 0 0 chr1 137721726 137721818 -59473614 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 4 1635 1111 102 6 11 chr1 137721818 137721996 -59473436 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 4 1635 213 317 69 10 chr1 137721996 137722098 -59473334 - PB1D10 SINE Alu -1 116 9 4 1635 447 19 0 0 chr1 137725073 137725125 -59470307 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1635 429 76 0 0 chr1 137725594 137725660 -59469772 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1635 218 277 0 0 chr1 137726707 137726754 -59468678 - MER5A DNA MER1_type -93 96 50 4 1635 729 250 150 0 chr1 137729725 137729905 -59465527 + B3 SINE B2 7 213 -3 4 1635 306 0 0 0 chr1 137730935 137730969 -59464463 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1635 258 297 26 51 chr1 137732132 137732249 -59463183 - L2b LINE L2 -24 3351 3238 4 1635 382 302 91 85 chr1 137734126 137734325 -59461107 - MIRm SINE MIR -75 201 2 4 1635 692 251 82 16 chr1 137736123 137736305 -59459127 + B3A SINE B2 2 195 -3 4 1635 230 280 67 0 chr1 137736492 137736567 -59458865 - L1MD2 LINE L1 -203 6156 6077 4 1635 660 229 69 38 chr1 137736576 137736735 -59458697 + RSINE1 SINE B4 2 165 0 4 1635 263 106 0 0 chr1 137736735 137736782 -59458650 - B2_Mm1t SINE B2 -8 185 139 4 1635 259 197 33 0 chr1 137736861 137736922 -59458510 - L1MD2 LINE L1 -385 5974 5912 4 1635 471 48 0 0 chr1 137738377 137738439 -59456993 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1635 555 16 0 0 chr1 137738908 137738972 -59456460 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1635 299 137 75 71 chr1 137739336 137739427 -59456005 - B1F SINE Alu -48 99 1 4 1635 233 257 38 63 chr1 137739351 137739430 -59456002 - ID_B1 SINE B4 -69 155 79 4 1635 193 300 34 68 chr1 137741445 137741563 -59453869 - L2b LINE L2 -4 3371 3258 4 1635 231 36 0 0 chr1 137745089 137745117 -59450315 + (CTGGGG)n Simple_repeat Simple_repeat 6 33 0 4 1635 841 128 7 13 chr1 137746512 137746667 -59448765 - B1_Mur2 SINE Alu 0 149 1 4 1635 858 261 51 99 chr1 137749799 137750147 -59445285 - ORR1E LTR MaLR 0 359 25 4 1635 351 0 0 0 chr1 137750147 137750186 -59445246 + (TGGGGG)n Simple_repeat Simple_repeat 1 39 0 4 1635 858 261 51 99 chr1 137750186 137750211 -59445221 - ORR1E LTR MaLR -335 24 4 4 1635 245 51 0 25 chr1 137750531 137750571 -59444861 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1635 498 286 105 46 chr1 137750647 137750885 -59444547 + MER44A DNA MER2_type 11 262 -77 4 1635 1230 49 0 0 chr1 137750938 137751082 -59444350 + B1_Mus1 SINE Alu 2 145 -3 4 1635 315 65 0 0 chr1 137751082 137751128 -59444304 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 4 1635 408 266 112 6 chr1 137751194 137751364 -59444068 - L1MA9 LINE L1 -301 6011 5824 4 1635 220 297 56 56 chr1 137752197 137752304 -59443128 + MIR SINE MIR 31 137 -125 4 1635 258 32 0 0 chr1 137753129 137753160 -59442272 + (TGG)n Simple_repeat Simple_repeat 2 32 0 5 1635 202 121 0 29 chr1 137753907 137753941 -59441491 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 5 1635 347 288 107 38 chr1 137754426 137754585 -59440847 - MIR SINE MIR -12 250 81 5 1635 877 192 0 7 chr1 137755318 137755465 -59439967 + B1_Mur3 SINE Alu 2 147 -2 5 1635 234 0 0 0 chr1 137755467 137755493 -59439939 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1635 496 93 13 0 chr1 137755515 137755590 -59439842 + B3A SINE B2 5 80 -118 5 1635 188 88 59 0 chr1 137756118 137756152 -59439280 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 5 1635 443 214 10 48 chr1 137756154 137756257 -59439175 - B1F1 SINE Alu -36 113 15 5 1635 284 275 0 48 chr1 137756192 137756276 -59439156 - B4A SINE B4 -128 164 85 5 1635 387 105 0 0 chr1 137756435 137756492 -59438940 + (TCCCC)n Simple_repeat Simple_repeat 3 59 0 5 1635 513 206 18 36 chr1 137756538 137756649 -59438783 - B4 SINE B4 -37 255 147 5 1636 964 108 0 12 chr1 137756689 137756857 -59438575 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 5 1636 189 0 0 0 chr1 137756866 137756887 -59438545 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1636 183 356 126 31 chr1 137757941 137758164 -59437268 + L2a LINE L2 3091 3334 -92 5 1636 520 332 59 5 chr1 137758588 137758791 -59436641 + MIR SINE MIR 13 226 -36 5 1636 315 0 0 0 chr1 137760237 137760272 -59435160 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1636 305 286 13 0 chr1 137761134 137761211 -59434221 + ID4 SINE ID 3 80 -3 5 1636 225 139 0 0 chr1 137761233 137761276 -59434156 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 5 1636 332 353 153 29 chr1 137763061 137763457 -59431975 + L2 LINE L2 641 1093 -2326 5 1636 453 234 139 8 chr1 137763457 137763586 -59431846 - RSINE1 SINE B4 -17 148 3 5 1636 332 353 153 29 chr1 137763586 137763810 -59431622 + L2 LINE L2 1094 1338 -2081 5 1636 231 375 139 19 chr1 137763825 137764091 -59431341 + L2 LINE L2 1423 1720 -1699 5 1636 5634 86 55 15 chr1 137764209 137765021 -59430411 - Lx3A LINE L1 -5 6976 6132 5 1636 551 310 0 0 chr1 137765021 137765150 -59430282 - ID_B1 SINE B4 -93 131 3 5 1636 461 307 55 29 chr1 137766964 137767202 -59428230 + L1ME3A LINE L1 5825 6068 -105 5 1636 310 151 27 0 chr1 137769875 137769948 -59425484 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1636 434 297 29 14 chr1 137770260 137770400 -59425032 + ID_B1 SINE B4 80 221 -3 5 1636 267 299 0 13 chr1 137770413 137770491 -59424941 + ID4_ SINE ID 2 78 -5 5 1636 847 195 0 0 chr1 137770862 137771011 -59424421 + B3 SINE B2 1 149 -67 5 1636 4168 122 50 10 chr1 137771016 137771736 -59423696 + RMER6A LTR ERVK 1 749 -7 5 1636 316 243 0 0 chr1 137771741 137771811 -59423621 + B3 SINE B2 147 216 0 5 1636 1738 151 46 7 chr1 137772612 137772919 -59422513 + MTC LTR MaLR 5 323 -98 5 1636 1047 127 191 0 chr1 137773195 137773384 -59422048 + URR1B DNA MER1_type 1 225 0 5 1636 183 80 0 0 chr1 137774201 137774226 -59421206 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 5 1636 609 14 0 0 chr1 137774958 137775028 -59420404 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 5 1636 1088 64 43 0 chr1 137775795 137775936 -59419496 - B1_Mm SINE Alu 0 147 1 5 1636 1364 97 0 21 chr1 137775936 137776124 -59419308 - B2_Mm2 SINE B2 -10 185 1 5 1636 319 283 79 55 chr1 137777550 137777677 -59417755 + MIRb SINE MIR 22 151 -117 5 1636 738 268 137 35 chr1 137777714 137778027 -59417405 + MER2 DNA MER2_type 1 345 0 5 1636 207 0 0 0 chr1 137781786 137781809 -59413623 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1636 338 292 90 132 chr1 137782430 137782596 -59412836 + RSINE1 SINE B4 5 163 -2 5 1636 614 143 0 8 chr1 137782597 137782717 -59412715 + GA-rich Low_complexity Low_complexity 4 122 0 5 1636 404 302 161 5 chr1 137782906 137783099 -59412333 + RMER15 LTR ERVL 353 575 0 5 1636 498 17 0 0 chr1 137783837 137783896 -59411536 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1636 720 171 0 54 chr1 137783896 137784037 -59411395 - B1_Mur3 SINE Alu -8 141 9 5 1636 423 0 0 0 chr1 137784060 137784107 -59411325 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1636 360 0 0 0 chr1 137784163 137784203 -59411229 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1636 228 292 45 106 chr1 137785110 137785309 -59410123 + MIRm SINE MIR 90 276 0 5 1636 225 0 0 0 chr1 137785429 137785454 -59409978 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1636 1080 114 0 0 chr1 137785454 137785629 -59409803 + (GA)n Simple_repeat Simple_repeat 1 176 0 5 1636 277 320 44 81 chr1 137785629 137785712 -59409720 - MER5A DNA MER1_type -34 155 79 5 1636 899 190 65 25 chr1 137785712 137785912 -59409520 - B3 SINE B2 -7 209 2 5 1636 277 320 44 81 chr1 137785912 137785988 -59409444 - MER5A DNA MER1_type -111 78 3 5 1636 830 171 148 11 chr1 137787010 137787193 -59408239 - B3 SINE B2 -6 210 3 5 1636 435 62 15 0 chr1 137787326 137787391 -59408041 - B1_Mus1 SINE Alu -82 66 1 5 1636 702 91 0 0 chr1 137788354 137788453 -59406979 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 5 1636 281 350 109 10 chr1 137789112 137789314 -59406118 + MIR SINE MIR 9 230 -32 5 1636 616 320 0 0 chr1 137789397 137789550 -59405882 - B4A SINE B4 -139 153 1 5 1636 795 314 9 17 chr1 137789563 137789796 -59405636 - B4A SINE B4 -61 231 1 5 1636 360 94 0 0 chr1 137790247 137790300 -59405132 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1636 267 31 0 0 chr1 137791624 137791656 -59403776 + (TGG)n Simple_repeat Simple_repeat 3 34 0 5 1636 441 36 0 0 chr1 137791657 137791712 -59403720 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1636 896 138 0 0 chr1 137792967 137793105 -59402327 - B1_Mur3 SINE Alu -1 148 11 5 1636 258 235 0 0 chr1 137793253 137793304 -59402128 - B1F SINE Alu -88 61 11 5 1636 605 270 45 11 chr1 137793948 137794124 -59401308 - B3A SINE B2 -16 182 1 5 1636 220 375 0 0 chr1 137794603 137794691 -59400741 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 1636 333 301 32 11 chr1 137794877 137794971 -59400461 + B1F1 SINE Alu 3 98 -51 5 1636 304 254 0 0 chr1 137795177 137795244 -59400188 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 5 1636 272 271 28 94 chr1 137795244 137795280 -59400152 + BC1_Mm scRNA scRNA 4 99 -53 5 1636 182 278 43 32 chr1 137796512 137796605 -59398827 + MIR SINE MIR 39 132 -76 5 1636 220 244 37 37 chr1 137797491 137797572 -59397860 - MIR3 SINE MIR -25 183 103 5 1636 334 314 102 0 chr1 137799783 137799920 -59395512 - MIRb SINE MIR -111 157 7 5 1636 285 76 46 0 chr1 137800978 137801026 -59394406 + PB1D9 SINE Alu 6 55 -95 5 1636 222 154 96 0 chr1 137800983 137801035 -59394397 + ID_B1 SINE B4 91 147 -77 5 1636 639 159 0 0 chr1 137801035 137801148 -59394284 + (CAGAGA)n Simple_repeat Simple_repeat 1 113 0 5 1636 660 105 0 0 chr1 137801199 137801294 -59394138 + B1_Mus2 SINE Alu 42 136 -11 5 1636 468 0 0 0 chr1 137801295 137801347 -59394085 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 5 1636 890 157 217 0 chr1 137801364 137801530 -59393902 + B3 SINE B2 1 202 -14 5 1636 204 40 0 0 chr1 137801530 137801555 -59393877 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1636 277 217 17 0 chr1 137801945 137802005 -59393427 + MIRm SINE MIR 88 148 -128 5 1636 909 58 0 0 chr1 137802692 137802812 -59392620 + B1_Mm SINE Alu 19 138 -9 5 1636 270 0 0 0 chr1 137802812 137802842 -59392590 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1636 387 0 0 0 chr1 137802851 137802894 -59392538 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 5 1636 212 341 45 0 chr1 137803842 137803930 -59391502 - MIRc SINE MIR -92 176 85 5 1636 327 324 57 23 chr1 137804821 137804998 -59390434 - MIRb SINE MIR -56 212 30 5 1636 225 0 0 0 chr1 137809221 137809246 -59386186 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 5 1636 186 43 0 0 chr1 137809320 137809343 -59386089 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1636 42 0 0 0 chr1 137809355 137809397 -59386035 + AT_rich Low_complexity Low_complexity 1 42 0 5 1636 222 156 0 0 chr1 137809513 137809558 -59385874 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1636 215 347 40 20 chr1 137810673 137810790 -59384642 + MER5A DNA MER1_type 4 144 -45 5 1636 214 291 19 56 chr1 137811119 137811279 -59384153 + (TATATG)n Simple_repeat Simple_repeat 4 157 0 5 1636 351 113 0 0 chr1 137811323 137811376 -59384056 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1636 406 230 49 18 chr1 137811378 137811542 -59383890 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 5 1636 369 0 0 0 chr1 137812629 137812670 -59382762 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1636 486 0 0 0 chr1 137814783 137814837 -59380595 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1636 321 317 41 0 chr1 137816603 137816726 -59378706 - Tigger15a DNA TcMar -110 605 478 5 1636 324 0 0 0 chr1 137817080 137817116 -59378316 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1636 288 289 50 30 chr1 137817797 137817897 -59377535 - MIR SINE MIR -55 207 106 5 1636 1200 95 0 0 chr1 137818005 137818215 -59377217 + (TG)n Simple_repeat Simple_repeat 1 210 0 5 1636 239 265 202 12 chr1 137820135 137820219 -59375213 - MER3 DNA MER1_type -52 157 58 5 1636 499 288 37 6 chr1 137821639 137821800 -59373632 + MIRb SINE MIR 26 191 -77 5 1636 252 0 0 0 chr1 137821801 137821829 -59373603 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1636 600 14 0 0 chr1 137823070 137823139 -59372293 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 5 1636 225 281 85 0 chr1 137824147 137824229 -59371203 - MIR SINE MIR -58 150 62 5 1636 261 0 0 0 chr1 137824261 137824290 -59371142 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1636 422 292 0 16 chr1 137825586 137825708 -59369724 + MIR3 SINE MIR 51 170 -38 6 1636 627 224 52 7 chr1 137825709 137825862 -59369570 - MER5A1 DNA MER1_type 0 166 7 6 1636 207 279 29 14 chr1 137827842 137827911 -59367521 + MIRc SINE MIR 20 89 -179 6 1636 189 0 0 0 chr1 137828603 137828624 -59366808 + (CTG)n Simple_repeat Simple_repeat 1 21 0 6 1636 310 250 0 0 chr1 137828863 137828935 -59366497 + ID2 SINE ID 1 72 -11 6 1636 1012 287 57 33 chr1 137829093 137829208 -59366224 - L1MB4 LINE L1 -101 6082 5967 6 1636 745 218 95 15 chr1 137829208 137829408 -59366024 - B3 SINE B2 0 216 1 6 1636 1023 268 43 7 chr1 137829408 137829714 -59365718 - L1MB4 LINE L1 -217 5966 5651 6 1636 426 255 0 10 chr1 137830485 137830588 -59364844 + HAL1b LINE L1 247 348 -1661 6 1636 227 301 127 9 chr1 137831124 137831352 -59364080 + HAL1b LINE L1 891 1145 -864 6 1636 304 325 139 28 chr1 137831629 137832059 -59363373 + HAL1b LINE L1 1467 1944 -65 6 1636 201 154 0 0 chr1 137832381 137832420 -59363012 + A-rich Low_complexity Low_complexity 1 39 0 6 1636 268 339 43 48 chr1 137833392 137833542 -59361890 + MIRb SINE MIR 38 186 -82 6 1636 29 70 0 0 chr1 137833852 137833909 -59361523 + AT_rich Low_complexity Low_complexity 1 57 0 6 1636 760 134 144 19 chr1 137833997 137834012 -59361420 - B2_Mm2 SINE B2 -14 181 167 6 1636 207 0 0 0 chr1 137834012 137834035 -59361397 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1636 760 134 144 19 chr1 137834035 137834179 -59361253 - B2_Mm2 SINE B2 -29 166 2 6 1636 4039 131 54 29 chr1 137836066 137836787 -59358645 - L1_Mm LINE L1 -762 5121 4383 6 1636 5176 89 6 1 chr1 137836787 137837508 -59357924 + L1_Mus4 LINE L1 5912 6635 -1 6 1636 351 0 0 0 chr1 137837989 137838028 -59357404 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1636 234 246 70 28 chr1 137838082 137838153 -59357279 - L2c LINE L2 -18 3369 3296 6 1636 924 114 0 0 chr1 137838572 137838712 -59356720 + (GA)n Simple_repeat Simple_repeat 2 141 0 6 1636 240 59 0 0 chr1 137838948 137838982 -59356450 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1636 373 296 67 0 chr1 137841859 137841994 -59353438 - MIR SINE MIR -74 188 45 6 1636 359 247 10 61 chr1 137843554 137843653 -59351779 + L2c LINE L2 3102 3195 -192 6 1636 214 333 13 0 chr1 137844412 137844490 -59350942 - ID4_ SINE ID -4 79 1 6 1636 647 218 0 0 chr1 137844662 137844786 -59350646 + RSINE1 SINE B4 2 125 -40 6 1636 2014 106 8 151 chr1 137845082 137845560 -59349872 + RMER17C LTR ERVK 1 410 0 6 1636 442 253 86 30 chr1 137845836 137846105 -59349327 - L1M5 LINE L1 -1594 4552 4269 6 1636 255 319 22 0 chr1 137846113 137846204 -59349228 + Lx8 LINE L1 7033 7125 -348 6 1636 471 18 0 0 chr1 137846222 137846278 -59349154 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 6 1636 401 273 70 8 chr1 137846629 137846758 -59348674 + RMER15-int LTR ERVL 269 405 -4594 6 1636 244 228 85 37 chr1 137846821 137846903 -59348529 + B3 SINE B2 130 215 -1 6 1636 265 306 26 61 chr1 137846903 137847018 -59348414 + RMER15-int LTR ERVL 804 914 -4085 6 1636 468 338 182 18 chr1 137847066 137847466 -59347966 + RMER15-int LTR ERVL 1145 1610 -3389 6 1636 571 358 76 52 chr1 137847716 137848137 -59347295 + RMER15-int LTR ERVL 1653 2083 -2916 6 1636 888 299 57 12 chr1 137848449 137848781 -59346651 + RMER15-int LTR ERVL 4155 4501 -498 6 1636 334 389 52 5 chr1 137848784 137848978 -59346454 + L1MEc LINE L1 1074 1276 -5124 6 1636 364 208 14 0 chr1 137849138 137849210 -59346222 + B4A SINE B4 5 77 -215 6 1636 690 13 0 0 chr1 137852436 137852515 -59342917 + (GA)n Simple_repeat Simple_repeat 1 79 0 6 1636 342 243 57 28 chr1 137852675 137852781 -59342651 - PB1D10 SINE Alu 0 117 9 6 1636 462 169 0 0 chr1 137853676 137853765 -59341667 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1636 384 214 37 180 chr1 137854264 137854481 -59340951 + MT2B LTR ERVL 72 257 -344 6 1636 1006 44 0 42 chr1 137854383 137854526 -59340906 + B1_Mus1 SINE Alu 12 148 0 6 1636 790 109 8 0 chr1 137854524 137854643 -59340789 + B2_Mm1t SINE B2 27 146 -47 6 1636 368 100 0 0 chr1 137854648 137854698 -59340734 + B2_Mm2 SINE B2 47 96 -99 6 1636 23 33 0 0 chr1 137854710 137854740 -59340692 + AT_rich Low_complexity Low_complexity 1 30 0 6 1636 186 213 0 96 chr1 137856871 137856923 -59338509 + MIR SINE MIR 125 171 -91 6 1636 405 0 0 0 chr1 137856949 137856994 -59338438 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1636 216 0 0 0 chr1 137856994 137857017 -59338415 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1636 272 297 22 11 chr1 137857199 137857291 -59338141 - MER5A1 DNA MER1_type -1 165 73 6 1636 629 47 12 0 chr1 137857291 137857376 -59338056 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 6 1636 453 110 0 0 chr1 137857379 137857452 -59337980 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 6 1636 485 252 8 47 chr1 137859391 137859520 -59335912 - MER20 DNA MER1_type -76 143 20 6 1636 197 330 68 0 chr1 137862213 137862301 -59333131 - MIRm SINE MIR -162 114 21 6 1636 190 0 32 32 chr1 137867884 137867915 -59327517 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1636 182 263 100 50 chr1 137868816 137868896 -59326536 + MIR SINE MIR 24 107 -101 6 1636 337 322 13 59 chr1 137869049 137869201 -59326231 + ID_B1 SINE B4 80 224 0 6 1636 410 312 99 26 chr1 137870555 137870746 -59324686 - L2a LINE L2 -16 3410 3206 6 1636 254 330 47 9 chr1 137870953 137871060 -59324372 - MIRb SINE MIR -62 206 96 6 1636 1139 112 5 48 chr1 137871662 137871849 -59323583 + B2_Mm2 SINE B2 2 180 -15 6 1636 337 366 46 25 chr1 137872113 137872309 -59323123 - MIRb SINE MIR -14 254 55 6 1636 21 0 0 0 chr1 137872954 137872975 -59322457 + AT_rich Low_complexity Low_complexity 1 21 0 6 1636 357 295 159 60 chr1 137873941 137874305 -59321127 + MLT1J LTR MaLR 79 478 -34 6 1636 464 329 24 49 chr1 137875101 137875347 -59320085 + MIRb SINE MIR 7 246 -22 6 1636 782 331 51 86 chr1 137875399 137875832 -59319600 - MER47B DNA MER2_type 0 418 1 6 1636 1124 194 14 0 chr1 137875858 137876080 -59319352 - URR1A DNA MER1_type 0 226 2 6 1636 282 288 91 25 chr1 137876082 137876203 -59319229 - MIR SINE MIR -48 214 86 6 1636 393 117 0 0 chr1 137876897 137876957 -59318475 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1636 606 60 0 0 chr1 137877452 137877535 -59317897 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1636 390 21 0 0 chr1 137877535 137877581 -59317851 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1636 865 226 38 9 chr1 137877641 137877851 -59317581 - B3 SINE B2 0 216 1 6 1636 558 317 79 5 chr1 137877851 137878054 -59317378 - B4A SINE B4 -61 231 14 6 1636 183 227 106 0 chr1 137881359 137881425 -59314007 - L2a LINE L2 -43 3383 3311 6 1636 181 271 240 24 chr1 137881541 137881666 -59313766 - L2a LINE L2 -503 2916 2765 6 1636 474 18 0 0 chr1 137882287 137882342 -59313090 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1636 288 0 0 0 chr1 137882820 137882852 -59312580 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1636 765 263 0 20 chr1 137883547 137883749 -59311683 + B3A SINE B2 1 198 0 6 1636 308 230 68 0 chr1 137884444 137884518 -59310914 + ID2 SINE ID 5 83 0 6 1636 721 191 37 0 chr1 137885390 137885526 -59309906 + B1_Mur2 SINE Alu 3 143 -6 6 204 1699 210 51 31 chr1 137887477 137887866 -59307566 - MTD LTR MaLR -10 409 13 6 1637 306 0 0 0 chr1 137888040 137888074 -59307358 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1637 5376 148 40 14 chr1 137888074 137888948 -59306484 - RMER19B LTR ERVK -3 899 3 6 1637 685 199 51 14 chr1 137889537 137889675 -59305757 + RSINE1 SINE B4 4 146 -19 6 1637 349 238 0 0 chr1 137890673 137890736 -59304696 + B1F SINE Alu 64 126 -23 6 1637 220 281 0 0 chr1 137890975 137891036 -59304396 + MIRc SINE MIR 38 98 -170 6 1637 195 366 71 24 chr1 137891063 137891147 -59304285 + MIRb SINE MIR 2 89 -179 6 1637 389 308 104 36 chr1 137891172 137891394 -59304038 - L2 LINE L2 -439 2980 2744 6 1637 806 118 56 42 chr1 137892417 137892559 -59302873 + B1_Mur3 SINE Alu 5 148 -1 6 1637 1578 88 5 2 chr1 137892861 137893105 -59302327 - L1_Mus4 LINE L1 -458 6109 5870 6 1637 4152 82 16 2 chr1 137893106 137893652 -59301780 + L1_Mus4 LINE L1 6079 6632 -4 6 1637 249 33 0 0 chr1 137893653 137893683 -59301749 + (TAA)n Simple_repeat Simple_repeat 2 31 0 6 1637 258 293 0 0 chr1 137895469 137895527 -59299905 - L2b LINE L2 -7 3368 3311 6 1637 801 176 216 0 chr1 137895595 137895771 -59299661 + B3 SINE B2 3 216 0 6 1637 654 49 0 0 chr1 137895938 137896020 -59299412 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 6 1637 1389 32 14 0 chr1 137896022 137896309 -59299123 + (GGAA)n Simple_repeat Simple_repeat 1 291 0 6 1637 414 0 0 0 chr1 137897390 137897436 -59297996 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1637 270 0 0 0 chr1 137897436 137897465 -59297967 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1637 436 93 13 13 chr1 137897465 137897540 -59297892 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 6 1637 1107 268 33 25 chr1 137897886 137898162 -59297270 - B4A SINE B4 -8 284 7 6 1637 264 330 75 0 chr1 137898665 137898771 -59296661 + MIR SINE MIR 14 127 -135 6 1637 1746 242 32 15 chr1 137898777 137899154 -59296278 + MTE2b LTR MaLR 1 370 0 6 1637 253 328 40 16 chr1 137899154 137899278 -59296154 + MIR SINE MIR 134 260 -2 6 1637 331 288 0 0 chr1 137899355 137899421 -59296011 + ID4_ SINE ID 16 81 -2 6 1637 1283 239 138 3 chr1 137899596 137899923 -59295509 - MTE2b LTR MaLR -4 375 5 6 1637 585 200 72 0 chr1 137899926 137900051 -59295381 - MTE2b-int LTR MaLR -2 1578 1445 6 1637 508 304 51 15 chr1 137900075 137900212 -59295220 - B3A SINE B2 -10 188 47 6 1637 1943 174 36 28 chr1 137900212 137900603 -59294829 - ORR1B1 LTR MaLR 0 394 1 6 1637 762 321 26 160 chr1 137900624 137900957 -59294475 - MTE2b-int LTR MaLR -134 1446 1179 6 1637 261 0 0 0 chr1 137900957 137900986 -59294446 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1637 762 321 26 160 chr1 137900986 137901182 -59294250 - MTE2b-int LTR MaLR -402 1178 988 6 1637 1469 262 63 119 chr1 137901180 137901783 -59293649 - MTE2b-int LTR MaLR -1008 572 4 6 1637 1076 272 150 9 chr1 137901775 137901826 -59293606 - MTE2b LTR MaLR -2 377 312 6 1637 252 0 0 0 chr1 137901826 137901854 -59293578 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 6 1637 1076 272 150 9 chr1 137901854 137902128 -59293304 - MTE2b LTR MaLR -68 311 6 6 1637 25 31 0 0 chr1 137902510 137902542 -59292890 + AT_rich Low_complexity Low_complexity 1 32 0 6 1637 692 297 67 42 chr1 137902546 137902739 -59292693 - B3A SINE B2 0 198 1 6 1637 248 306 16 0 chr1 137902748 137902810 -59292622 - ID4 SINE ID -1 82 20 7 1637 289 273 80 10 chr1 137903414 137903514 -59291918 + MIR3 SINE MIR 68 174 -34 7 1637 195 256 148 107 chr1 137903746 137903895 -59291537 - MIRb SINE MIR -67 201 47 7 1637 243 304 0 14 chr1 137904780 137904850 -59290582 + L2c LINE L2 3312 3380 -7 7 1637 1167 136 20 40 chr1 137905016 137905047 -59290385 - B2_Mm2 SINE B2 0 195 165 7 1637 180 0 0 0 chr1 137905047 137905067 -59290365 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1637 1167 136 20 40 chr1 137905067 137905234 -59290198 - B2_Mm2 SINE B2 -31 164 1 7 1637 406 307 0 19 chr1 137905279 137905382 -59290050 + PB1 SINE Alu 24 124 -3 7 1637 189 333 22 22 chr1 137905837 137905926 -59289506 - L3 LINE CR1 -250 4239 4151 7 1637 1006 168 89 52 chr1 137906070 137906283 -59289149 + URR1B DNA MER1_type 5 225 0 7 1637 434 296 74 19 chr1 137906525 137906687 -59288745 + ORR1E LTR MaLR 3 173 -186 7 1637 1324 81 40 0 chr1 137906687 137906861 -59288571 + B2_Mm2 SINE B2 1 181 -14 7 1637 2109 137 68 74 chr1 137907090 137907484 -59287948 + ORR1B1 LTR MaLR 3 394 0 7 1637 404 293 144 36 chr1 137907550 137907723 -59287709 + ORR1B1-int LTR MaLR 20 217 -1363 7 1637 1148 218 0 5 chr1 137907723 137907940 -59287492 + B3 SINE B2 1 216 0 7 1637 404 293 144 36 chr1 137907940 137907961 -59287471 + ORR1B1-int LTR MaLR 218 235 -1345 7 1637 297 0 0 0 chr1 137908076 137908109 -59287323 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 7 1637 644 0 0 13 chr1 137908426 137908503 -59286929 + (TCC)n Simple_repeat Simple_repeat 2 77 0 7 1637 632 159 112 0 chr1 137908963 137909070 -59286362 + PB1D9 SINE Alu 1 119 -1 7 1637 1371 111 16 0 chr1 137909174 137909364 -59286068 + B2_Mm2 SINE B2 3 195 0 7 1637 254 292 147 42 chr1 137909618 137909761 -59285671 + Charlie1 DNA MER1_type 7 164 -2617 7 1637 329 238 92 8 chr1 137909911 137910042 -59285390 + Charlie1 DNA MER1_type 2634 2775 -6 7 1637 967 290 92 40 chr1 137911163 137911609 -59283823 - MLT1D LTR MaLR -11 494 26 7 1637 1155 140 93 4 chr1 137911760 137911967 -59283465 + ORR1A2 LTR MaLR 1 260 -134 7 1637 5087 129 69 5 chr1 137911968 137912798 -59282634 + MERVL_2A-int LTR ERVL 4747 5629 -132 7 1637 261 270 0 26 chr1 137912798 137912874 -59282558 + ORR1A3-int LTR MaLR 567 640 -1323 7 1637 276 0 0 0 chr1 137912874 137912908 -59282524 + MERVL-int LTR ERVL 5448 5481 -4 7 1637 3153 101 19 39 chr1 137912911 137913396 -59282036 + MT2C_Mm LTR ERVL 1 475 0 7 1637 1380 108 5 0 chr1 137913455 137913649 -59281783 + B2_Mm2 SINE B2 1 195 0 7 1637 255 340 10 30 chr1 137913856 137913956 -59281476 - MIR SINE MIR -73 135 38 7 1637 216 0 0 0 chr1 137914220 137914244 -59281188 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1637 180 200 0 0 chr1 137915936 137915976 -59279456 + C-rich Low_complexity Low_complexity 1 40 0 7 1637 219 369 66 73 chr1 137916739 137916775 -59278657 + L3 LINE CR1 3976 4014 -475 7 1637 261 0 0 0 chr1 137916775 137916804 -59278628 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1637 219 369 66 73 chr1 137916804 137917068 -59278364 + L3 LINE CR1 4015 4273 -216 7 1637 212 315 75 75 chr1 137917199 137917360 -59278072 - MER5A DNA MER1_type -21 168 8 7 1637 1103 181 14 48 chr1 137917531 137917740 -59277692 - B3 SINE B2 -13 203 2 7 1637 747 108 0 0 chr1 137917757 137917868 -59277564 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 7 1637 1021 108 0 26 chr1 137917893 137918045 -59277387 - B1_Mus1 SINE Alu 0 148 1 7 1637 185 244 59 118 chr1 137919061 137919163 -59276269 - MIR3 SINE MIR -12 196 101 7 1637 996 161 128 57 chr1 137921511 137921722 -59273710 - URR1A DNA MER1_type 0 226 1 7 1637 600 299 160 23 chr1 137922583 137922802 -59272630 - B4A SINE B4 -43 249 1 7 1637 207 360 19 57 chr1 137922876 137922982 -59272450 + MIRc SINE MIR 3 104 -164 7 1637 481 255 94 94 chr1 137923195 137923355 -59272077 - RSINE1 SINE B4 -2 163 4 7 1637 359 220 48 29 chr1 137929307 137929410 -59266022 - PB1D10 SINE Alu -11 106 2 7 1637 468 0 0 0 chr1 137930111 137930163 -59265269 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1637 378 0 0 0 chr1 137930163 137930204 -59265228 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1637 181 244 49 0 chr1 137931528 137931569 -59263863 - L4 LINE RTE -1343 686 644 7 1637 1207 41 7 0 chr1 137932797 137932942 -59262490 + B1_Mus1 SINE Alu 2 147 -1 7 1637 215 304 0 81 chr1 137933891 137933977 -59261455 + L2 LINE L2 2479 2557 -862 7 1637 668 203 91 39 chr1 137934895 137935049 -59260383 + RSINE1 SINE B4 4 165 0 7 1637 244 270 121 22 chr1 137935606 137935697 -59259735 + MIR3 SINE MIR 1 100 -108 7 1637 219 139 0 0 chr1 137936867 137936903 -59258529 + (CCA)n Simple_repeat Simple_repeat 1 36 0 7 1637 274 381 43 13 chr1 137937898 137938074 -59257358 + MIR SINE MIR 10 196 -72 7 1637 222 254 0 16 chr1 137938557 137938621 -59256811 - L2b LINE L2 -25 3350 3288 7 1637 181 296 0 0 chr1 137940354 137940398 -59255034 - MIR SINE MIR -144 64 21 7 1637 251 114 23 0 chr1 137940686 137940730 -59254702 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1637 402 74 0 0 chr1 137940730 137940783 -59254649 + (TATG)n Simple_repeat Simple_repeat 2 55 0 7 1637 458 287 143 6 chr1 137941303 137941485 -59253947 + MIR SINE MIR 35 241 -21 7 1637 1291 107 0 21 chr1 137942195 137942386 -59253046 + B2_Mm2 SINE B2 3 189 -6 7 1637 1299 79 0 0 chr1 137943004 137943181 -59252251 + (TTC)n Simple_repeat Simple_repeat 1 177 0 7 1637 194 174 22 0 chr1 137943185 137943231 -59252201 + CT-rich Low_complexity Low_complexity 2 48 0 7 1637 796 194 35 0 chr1 137943237 137943381 -59252051 - B1_Mur4 SINE Alu 0 150 2 7 1637 250 178 89 0 chr1 137943497 137943542 -59251890 + MER103 DNA DNA 34 82 -84 7 1637 201 94 0 0 chr1 137944295 137944327 -59251105 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 7 1637 334 312 32 8 chr1 137944691 137944817 -59250615 + MIRb SINE MIR 94 222 -46 7 1637 413 141 0 40 chr1 137945956 137946030 -59249402 + B1_Mur4 SINE Alu 79 149 -1 7 1637 242 116 0 23 chr1 137946033 137946077 -59249355 + (GAAAA)n Simple_repeat Simple_repeat 1 43 0 7 1637 500 279 105 6 chr1 137946352 137946514 -59248918 - B3A SINE B2 -20 178 1 7 1637 405 0 0 0 chr1 137948371 137948416 -59247016 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1637 579 29 0 0 chr1 137948416 137948484 -59246948 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1637 495 71 35 12 chr1 137951795 137951880 -59243552 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 7 1637 890 216 5 35 chr1 137952031 137952232 -59243200 - B3A SINE B2 -2 196 2 7 1637 363 23 0 0 chr1 137952400 137952444 -59242988 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1637 859 267 25 41 chr1 137952833 137953073 -59242359 + B4 SINE B4 76 288 -4 7 1637 333 0 0 0 chr1 137953124 137953161 -59242271 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1637 292 322 120 47 chr1 137953761 137954035 -59241397 - L2c LINE L2 -2 3385 3092 7 1637 610 155 0 0 chr1 137954892 137954989 -59240443 - B3 SINE B2 -118 98 2 7 1637 294 338 0 0 chr1 137956042 137956119 -59239313 + ID4 SINE ID 7 83 0 7 1637 637 248 0 27 chr1 137957300 137957449 -59237983 + RSINE1 SINE B4 2 146 -19 7 1637 218 330 55 18 chr1 137958528 137958663 -59236769 + MIR SINE MIR 9 149 -59 7 1637 1021 164 2 4 chr1 137958701 137959205 -59236227 + (TG)n Simple_repeat Simple_repeat 1 502 0 7 1637 192 264 0 0 chr1 137961626 137961679 -59233753 - L2 LINE L2 -340 3079 3027 7 1637 190 279 48 32 chr1 137962450 137962513 -59232919 - L2 LINE L2 -925 2494 2431 7 1637 738 232 42 18 chr1 137962715 137962747 -59232685 - B3A SINE B2 -7 191 158 7 1637 207 0 0 0 chr1 137962747 137962770 -59232662 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1637 775 182 2 1 chr1 137962770 137962904 -59232528 - B3 SINE B2 -41 157 21 7 1637 1557 223 71 54 chr1 137964683 137965090 -59230342 - MTD LTR MaLR 0 419 6 7 1637 472 315 70 43 chr1 137965966 137966294 -59229138 - MLT1B LTR MaLR 0 390 24 7 1637 328 302 154 41 chr1 137966313 137966534 -59228898 - MIR SINE MIR -14 248 3 7 1637 676 300 116 34 chr1 137968118 137968525 -59226907 - Charlie1b DNA MER1_type -14 509 70 7 1637 804 278 110 8 chr1 137969259 137969513 -59225919 + B4A SINE B4 5 284 -8 7 1637 189 0 0 0 chr1 137969520 137969541 -59225891 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1637 630 0 0 0 chr1 137969541 137969610 -59225822 + (GA)n Simple_repeat Simple_repeat 2 71 0 7 1637 279 168 0 70 chr1 137970419 137970547 -59224885 + G-rich Low_complexity Low_complexity 2 120 0 7 1637 734 114 114 0 chr1 137970845 137970977 -59224455 - B1_Mus1 SINE Alu 0 148 2 7 1637 369 230 175 28 chr1 137971027 137971170 -59224262 - MIRb SINE MIR -66 202 39 7 1637 182 190 0 23 chr1 137971220 137971263 -59224169 + MIRc SINE MIR 223 264 -4 7 1637 487 302 84 11 chr1 137972031 137972222 -59223210 + MIR SINE MIR 36 240 -22 7 1637 555 244 197 13 chr1 137972375 137972603 -59222829 + Charlie4a DNA MER1_type 52 321 -187 7 1637 1696 133 239 26 chr1 137973535 137973882 -59221550 - MTC LTR MaLR 0 421 1 7 1637 256 277 12 0 chr1 137974819 137974985 -59220447 + (CA)n Simple_repeat Simple_repeat 2 169 0 7 1637 999 226 5 10 chr1 137975218 137975424 -59220008 - B3 SINE B2 -7 209 5 7 1637 468 0 0 0 chr1 137975436 137975488 -59219944 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1637 1214 282 49 12 chr1 137977222 137977566 -59217866 - ORR1E LTR MaLR -2 357 1 7 1637 3369 158 142 166 chr1 137977952 137978252 -59217180 - RLTR25B LTR ERVK 0 1028 635 7 1637 315 0 0 0 chr1 137978252 137978287 -59217145 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1637 3369 158 142 166 chr1 137978287 137978937 -59216495 - RLTR25B LTR ERVK -394 634 116 7 1637 432 0 0 0 chr1 137978937 137978985 -59216447 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1637 360 0 0 0 chr1 137978985 137979024 -59216408 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1637 3369 158 142 166 chr1 137979024 137979123 -59216309 - RLTR25B LTR ERVK -913 115 4 7 1637 215 341 22 0 chr1 137979726 137979817 -59215615 - L2 LINE L2 -965 2454 2362 8 1637 672 13 0 0 chr1 137980438 137980515 -59214917 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 8 1637 392 0 21 0 chr1 137980515 137980563 -59214869 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1637 514 214 0 0 chr1 137980571 137980669 -59214763 - RSINE1 SINE B4 -65 100 3 8 1637 358 311 0 36 chr1 137981193 137981330 -59214102 + GA-rich Low_complexity Low_complexity 1 132 0 8 1637 293 286 84 28 chr1 137981351 137981582 -59213850 - MER44A DNA MER2_type -17 322 32 8 1637 360 278 12 30 chr1 137982939 137983106 -59212326 + CT-rich Low_complexity Low_complexity 4 167 0 8 1637 348 321 14 49 chr1 137984273 137984417 -59211015 - MER5A1 DNA MER1_type 0 166 28 8 1637 264 301 0 14 chr1 137986802 137986876 -59208556 + ID4 SINE ID 1 73 -10 8 1637 1067 44 0 72 chr1 137986885 137987079 -59208353 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 8 1637 854 174 0 0 chr1 137987489 137987633 -59207799 + B1_Mur4 SINE Alu 1 144 -6 8 1637 717 171 0 0 chr1 137987634 137987780 -59207652 + GA-rich Low_complexity Low_complexity 2 147 0 8 1637 237 292 13 40 chr1 137988572 137988647 -59206785 + ID4 SINE ID 8 80 -3 8 1637 337 353 23 0 chr1 137989468 137989601 -59205831 + (ATGGTG)n Simple_repeat Simple_repeat 3 138 0 8 1637 522 256 84 13 chr1 137989621 137989775 -59205657 - HAL1-2a_MD LINE L1 -517 2507 2343 8 1637 610 283 43 5 chr1 137990581 137990766 -59204666 + ID_B1 SINE B4 5 196 -28 8 1637 1974 135 6 13 chr1 137994288 137994604 -59200828 - Lx4A LINE L1 0 7058 6745 8 1637 187 242 47 31 chr1 137994928 137994992 -59200440 - MIRc SINE MIR -89 179 115 8 1637 542 281 158 70 chr1 137995725 137996054 -59199378 - ORR1E LTR MaLR -1 358 1 8 1637 1996 119 25 91 chr1 137996386 137996793 -59198639 - ORR1B1 LTR MaLR 0 394 15 8 1637 231 220 16 33 chr1 137997492 137997553 -59197879 - L3 LINE CR1 -3464 1025 966 8 1637 876 158 217 0 chr1 137997714 137997898 -59197534 + URR1A DNA MER1_type 1 224 -2 8 1637 269 265 21 108 chr1 137998684 137998777 -59196655 - L2b LINE L2 0 3375 3291 8 1637 218 294 45 17 chr1 137998849 137998987 -59196445 - L2b LINE L2 -310 3116 2973 8 1637 215 365 52 39 chr1 138000349 138000503 -59194929 + MER5B DNA MER1_type 15 170 -8 1 1637 222 118 0 0 chr1 138001903 138001937 -59193495 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1637 228 274 32 0 chr1 138003135 138003197 -59192235 + MER45R DNA Tip100 44 107 -1474 3 1637 207 326 92 0 chr1 138004225 138004323 -59191109 - L2b LINE L2 -4 3371 3265 4 1637 466 301 98 6 chr1 138005224 138005388 -59190044 - MIR SINE MIR -59 203 25 5 1637 1185 181 19 10 chr1 138005447 138005653 -59189779 + B3 SINE B2 4 211 -5 6 1637 706 243 74 0 chr1 138005672 138005820 -59189612 + B3A SINE B2 3 161 -37 7 1637 459 0 0 0 chr1 138005826 138005877 -59189555 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1637 423 192 14 0 chr1 138005932 138006005 -59189427 + ID4_ SINE ID 1 74 -9 9 1637 375 173 0 0 chr1 138006007 138006088 -59189344 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1637 1185 273 72 66 chr1 138006134 138006785 -59188647 - RLTR18B LTR ERVK -49 567 3 1 1637 421 84 0 27 chr1 138010322 138010395 -59185037 + (TTC)n Simple_repeat Simple_repeat 3 73 0 1 1637 1142 216 9 5 chr1 138010443 138010657 -59184775 + B3 SINE B2 2 216 0 1 1637 1189 69 0 0 chr1 138010686 138010830 -59184602 + B1_Mus1 SINE Alu 3 146 -2 1 1637 225 83 0 0 chr1 138010840 138010876 -59184556 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1637 629 278 109 31 chr1 138010953 138011431 -59184001 - L1MC4 LINE L1 -142 7900 7340 1 1637 2068 61 110 17 chr1 138013104 138013405 -59182027 - ORR1A4 LTR MaLR 0 329 1 1 1637 203 316 39 26 chr1 138013829 138013907 -59181525 + MER5B DNA MER1_type 7 85 -93 1 1637 1004 119 4 4 chr1 138016853 138017083 -59178349 + (CA)n Simple_repeat Simple_repeat 1 230 0 1 1637 575 216 63 21 chr1 138017880 138018022 -59177410 + B1_Mur1 SINE Alu 2 149 0 2 1637 305 396 97 13 chr1 138018212 138018440 -59176992 - MIR SINE MIR -10 252 6 2 1638 450 210 12 0 chr1 138019036 138019117 -59176315 - ID4_ SINE ID -1 82 1 2 1638 502 148 27 0 chr1 138019292 138019386 -59176046 - MTC LTR MaLR 0 421 264 2 1638 279 247 89 11 chr1 138019623 138019713 -59175719 - PB1D10 SINE Alu -7 110 14 2 1638 746 133 63 49 chr1 138019993 138020135 -59175297 - B1_Mus1 SINE Alu 0 148 5 2 1638 825 249 91 45 chr1 138021104 138021369 -59174063 + B4A SINE B4 2 278 -14 2 1638 439 307 65 34 chr1 138021492 138021791 -59173641 - L1ME1 LINE L1 -321 6038 5740 2 1638 558 0 0 0 chr1 138022496 138022558 -59172874 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1638 308 301 29 19 chr1 138022703 138022808 -59172624 - MLT1I LTR MaLR -7 404 299 2 1638 414 240 79 40 chr1 138022835 138022961 -59172471 - MLT1I LTR MaLR -279 132 2 2 1638 235 262 16 0 chr1 138023281 138023342 -59172090 - ID4 SINE ID -21 62 1 3 1638 240 406 5 52 chr1 138023497 138023710 -59171722 - MIRb SINE MIR -29 239 37 3 1638 343 280 10 91 chr1 138023852 138023997 -59171435 + MIR3 SINE MIR 57 191 -17 3 1638 778 216 14 0 chr1 138024099 138024247 -59171185 + B1_Mur4 SINE Alu 1 150 0 3 1638 426 240 12 10 chr1 138024268 138024379 -59171053 + PB1D10 SINE Alu 7 125 -2 3 1638 648 0 0 0 chr1 138024390 138024462 -59170970 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1638 414 57 0 0 chr1 138025324 138025377 -59170055 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1638 303 28 0 0 chr1 138025432 138025468 -59169964 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1638 423 0 0 0 chr1 138025522 138025569 -59169863 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1638 273 290 100 11 chr1 138027575 138027714 -59167718 + MIR SINE MIR 38 188 -88 3 1638 348 43 0 0 chr1 138031571 138031617 -59163815 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1638 647 147 0 79 chr1 138032729 138032869 -59162563 - URR1B DNA MER1_type 0 225 97 3 1638 189 0 0 0 chr1 138033165 138033186 -59162246 + (CAGC)n Simple_repeat Simple_repeat 4 24 0 4 1638 306 0 0 0 chr1 138034306 138034340 -59161092 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1638 283 0 119 0 chr1 138034469 138034536 -59160896 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 4 1638 23 33 0 0 chr1 138034611 138034641 -59160791 + GC_rich Low_complexity Low_complexity 1 30 0 4 1638 274 351 9 18 chr1 138034923 138035036 -59160396 - L3b LINE CR1 -169 313 202 4 1638 1753 117 38 93 chr1 138035810 138036207 -59159225 + RMER10B LTR ERVL 24 398 0 4 1638 568 303 33 0 chr1 138036211 138036363 -59159069 + RSINE1 SINE B4 3 159 -6 4 1638 208 147 0 0 chr1 138036370 138036404 -59159028 + (CATA)n Simple_repeat Simple_repeat 3 36 0 4 1638 180 0 0 0 chr1 138036606 138036626 -59158806 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1638 631 303 61 48 chr1 138037441 138037836 -59157596 - L1MA4A LINE L1 -294 6009 5610 4 1638 217 236 234 8 chr1 138039369 138039497 -59155935 + MIR SINE MIR 40 196 -66 5 1638 251 304 33 50 chr1 138040881 138041002 -59154430 + MIR SINE MIR 144 262 0 5 1638 194 344 113 10 chr1 138041994 138042091 -59153341 + L3 LINE CR1 4325 4431 -58 5 1638 308 319 17 8 chr1 138042820 138042914 -59152518 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1638 483 130 0 0 chr1 138042914 138042991 -59152441 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1638 308 319 17 8 chr1 138042991 138043013 -59152419 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1638 795 61 0 0 chr1 138043325 138043439 -59151993 + (CACAC)n Simple_repeat Simple_repeat 3 116 0 5 1638 285 270 67 0 chr1 138047223 138047312 -59148120 + MER102c DNA MER1_type 222 316 -15 5 1638 301 229 43 0 chr1 138047415 138047485 -59147947 - B1F SINE Alu -3 146 74 5 1638 305 269 79 24 chr1 138048216 138048450 -59146982 - L1ME4a LINE L1 -159 5965 5704 5 1638 826 215 0 52 chr1 138051064 138051236 -59144196 - RSINE1 SINE B4 0 165 3 6 1638 531 209 0 98 chr1 138051246 138051368 -59144064 - PB1D10 SINE Alu -5 112 3 6 1638 321 82 0 0 chr1 138051374 138051423 -59144009 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1638 181 402 110 8 chr1 138051576 138051694 -59143738 - L2a LINE L2 0 3426 3297 6 1638 21 0 0 0 chr1 138051738 138051759 -59143673 + AT_rich Low_complexity Low_complexity 1 21 0 6 1638 225 250 0 0 chr1 138051902 138051954 -59143478 - L2 LINE L2 -339 3080 3029 6 1638 198 0 0 0 chr1 138052074 138052096 -59143336 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1638 203 259 67 45 chr1 138052496 138052585 -59142847 - MIR3 SINE MIR -16 192 102 6 1638 213 306 28 0 chr1 138054296 138054368 -59141064 - MIR3 SINE MIR -49 159 86 6 1638 698 130 0 144 chr1 138054636 138054789 -59140643 + B1_Mus1 SINE Alu 9 139 -9 6 1638 507 322 59 76 chr1 138055189 138055305 -59140127 + B4A SINE B4 2 117 -175 7 1638 1289 27 0 0 chr1 138055305 138055452 -59139980 + B1_Mm SINE Alu 1 147 0 7 1638 507 322 59 76 chr1 138055452 138055624 -59139808 + B4A SINE B4 118 285 -7 7 1638 195 42 0 0 chr1 138055633 138055657 -59139775 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 7 1638 1105 213 88 4 chr1 138057586 138057874 -59137558 - MLT1B LTR MaLR -100 405 1 7 1638 216 0 0 0 chr1 138058861 138058885 -59136547 + (ACATG)n Simple_repeat Simple_repeat 4 27 0 7 1638 458 296 126 0 chr1 138060561 138060760 -59134672 + MER82 DNA MER2_type 49 272 -381 7 1638 410 299 38 64 chr1 138060794 138060951 -59134481 + ID_B1 SINE B4 27 179 -45 7 1638 463 257 0 58 chr1 138060853 138060973 -59134459 + PB1D10 SINE Alu 5 117 0 7 1638 232 361 96 37 chr1 138061069 138061204 -59134228 + MER82 DNA MER2_type 484 626 -27 7 1638 543 275 118 10 chr1 138061225 138061420 -59134012 + B3 SINE B2 1 216 0 7 1638 390 228 95 38 chr1 138062913 138063018 -59132414 - PB1D10 SINE Alu -6 111 1 7 1638 738 113 0 0 chr1 138063058 138063182 -59132250 + (TC)n Simple_repeat Simple_repeat 1 124 0 8 1638 544 198 41 0 chr1 138065104 138065225 -59130207 - B1F SINE Alu -1 148 23 8 1638 333 140 0 0 chr1 138066252 138066309 -59129123 + (TATG)n Simple_repeat Simple_repeat 2 58 0 8 1638 739 296 60 24 chr1 138067059 138067345 -59128087 + L1MC1 LINE L1 6016 6309 -24 8 1638 312 48 0 0 chr1 138067345 138067387 -59128045 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 8 1638 739 296 60 24 chr1 138067387 138067398 -59128034 + L1MC1 LINE L1 6310 6324 -9 8 1638 202 86 57 0 chr1 138067407 138067442 -59127990 - MIRm SINE MIR -136 140 104 8 1638 228 316 10 31 chr1 138069944 138070042 -59125390 + C-rich Low_complexity Low_complexity 1 96 0 8 1638 203 0 0 36 chr1 138071383 138071411 -59124021 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 8 1638 255 31 0 0 chr1 138074320 138074352 -59121080 + (CCCTG)n Simple_repeat Simple_repeat 1 32 0 8 1638 276 204 19 0 chr1 138075754 138075808 -59119624 + B3A SINE B2 1 55 -143 8 1638 596 165 150 0 chr1 138075815 138075942 -59119490 + B1_Mus2 SINE Alu 1 146 -1 9 1638 24 53 0 0 chr1 138075955 138075993 -59119439 + AT_rich Low_complexity Low_complexity 1 38 0 9 1638 582 304 43 154 chr1 138076017 138076116 -59119316 - B4A SINE B4 0 292 220 9 1638 613 217 0 0 chr1 138076116 138076236 -59119196 - PB1D9 SINE Alu 0 120 1 9 1638 582 304 43 154 chr1 138076236 138076389 -59119043 - B4A SINE B4 -73 219 68 9 1638 426 309 21 14 chr1 138076386 138076527 -59118905 - B4 SINE B4 -136 156 15 9 1638 248 289 17 37 chr1 138076554 138076673 -59118759 - MIR3 SINE MIR -19 189 79 9 1638 417 39 0 0 chr1 138077647 138077698 -59117734 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 1638 500 42 14 0 chr1 138077698 138077768 -59117664 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 1638 210 204 0 20 chr1 138077851 138077901 -59117531 + PB1D10 SINE Alu 64 112 -5 9 1638 222 323 0 0 chr1 138077899 138077961 -59117471 + B4A SINE B4 83 144 -148 9 1638 501 165 65 4 chr1 138077919 138078039 -59117393 + PB1D10 SINE Alu 18 148 -1 1 1638 695 33 11 0 chr1 138078826 138078916 -59116516 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1638 630 233 354 4 chr1 138080258 138080512 -59114920 + ORR1D2 LTR MaLR 28 370 0 1 1638 306 67 0 0 chr1 138083831 138083876 -59111556 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 1 1638 363 277 0 0 chr1 138083917 138084076 -59111356 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 1638 1889 41 24 20 chr1 138084120 138084370 -59111062 - L1_Mus1 LINE L1 0 6567 6317 1 1638 829 190 10 141 chr1 138084580 138084893 -59110539 + RMER17B LTR ERVK 168 439 -519 1 1638 1127 185 29 51 chr1 138084906 138085220 -59110212 + RMER17C LTR ERVK 104 410 0 1 1638 185 341 20 82 chr1 138085503 138085611 -59109821 - MER5B DNA MER1_type -36 142 43 1 1638 1009 183 59 27 chr1 138085611 138085830 -59109602 + URR1A DNA MER1_type 1 226 0 1 1638 185 341 20 82 chr1 138085830 138085868 -59109564 - MER5B DNA MER1_type -136 42 5 1 1638 216 195 0 0 chr1 138085866 138085907 -59109525 - MER5B DNA MER1_type -137 41 1 1 1638 838 79 24 0 chr1 138086308 138086435 -59108997 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 1 1638 636 250 8 0 chr1 138086445 138086577 -59108855 + RSINE1 SINE B4 3 135 -30 1 1638 234 0 0 0 chr1 138086585 138086611 -59108821 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1638 2617 139 12 44 chr1 138086664 138087144 -59108288 + L1VL2 LINE L1 284 748 -5587 1 1638 186 43 0 0 chr1 138087864 138087887 -59107545 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1638 677 240 77 20 chr1 138089174 138089370 -59106062 + ID_B1 SINE B4 1 207 -17 1 1638 897 117 0 0 chr1 138089409 138089546 -59105886 + (GAGAA)n Simple_repeat Simple_repeat 3 139 0 1 1638 1732 135 140 47 chr1 138089991 138090185 -59105247 + RMER10B LTR ERVL 1 235 -163 1 1638 531 45 0 0 chr1 138090185 138090251 -59105181 + (TCC)n Simple_repeat Simple_repeat 2 67 0 1 1638 1732 135 140 47 chr1 138090251 138090420 -59105012 + RMER10B LTR ERVL 236 397 -1 1 1638 932 71 36 0 chr1 138090447 138090587 -59104845 + B2_Mm2 SINE B2 1 145 -50 1 1638 216 0 0 0 chr1 138090594 138090618 -59104814 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1638 207 0 0 0 chr1 138090703 138090726 -59104706 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1638 304 368 42 26 chr1 138090986 138091176 -59104256 + L1MEf LINE L1 109 301 -5899 1 1638 853 284 93 40 chr1 138091689 138092380 -59103052 + L1MEf LINE L1 1427 2153 -4047 1 1638 849 299 21 13 chr1 138092560 138092797 -59102635 + B4A SINE B4 48 286 -6 1 1638 2922 48 45 0 chr1 138093375 138093754 -59101678 - MTA_Mm LTR MaLR 0 396 1 1 1638 557 295 119 32 chr1 138093793 138094070 -59101362 + ORR1E LTR MaLR 1 301 -58 1 1638 180 111 0 0 chr1 138094070 138094097 -59101335 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 1 1638 764 124 0 79 chr1 138094099 138094239 -59101193 - B1_Mur3 SINE Alu -8 141 13 1 1638 242 308 37 104 chr1 138094125 138094259 -59101173 - B4 SINE B4 -88 204 80 1 1638 181 299 97 53 chr1 138095175 138095288 -59100144 - L2b LINE L2 -2 3373 3256 1 1638 208 270 32 0 chr1 138095660 138095723 -59099709 - L2b LINE L2 -662 2757 2693 1 1638 346 240 2 64 chr1 138097888 138097989 -59097443 + PB1D7 SINE Alu 1 92 -57 1 1638 448 283 160 22 chr1 138097989 138098220 -59097212 - Lx8 LINE L1 -1038 6435 6173 1 1638 6850 160 34 30 chr1 138098369 138099131 -59096301 + Lx6 LINE L1 4519 5290 -590 1 1638 1499 32 0 16 chr1 138099131 138099319 -59096113 + B2_Mm1a SINE B2 1 185 -8 1 1638 1277 68 45 6 chr1 138099328 138099505 -59095927 + B2_Mm2 SINE B2 2 185 -10 1 1638 8556 167 41 28 chr1 138099505 138100224 -59095208 + Lx6 LINE L1 5291 6012 -1448 1 1638 661 254 7 0 chr1 138100224 138100366 -59095066 - B1_Mus1 SINE Alu -5 143 1 1 1638 8556 194 69 20 chr1 138100366 138101224 -59094208 + Lx6 LINE L1 6013 6882 -578 1 1638 339 25 0 0 chr1 138101224 138101264 -59094168 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1638 8556 194 69 20 chr1 138101264 138101754 -59093678 + Lx6 LINE L1 6883 7459 -1 1 1638 23 0 0 0 chr1 138101776 138101799 -59093633 + AT_rich Low_complexity Low_complexity 1 23 0 1 1638 823 149 196 0 chr1 138101845 138102013 -59093419 - B3 SINE B2 -6 210 10 1 1638 188 167 21 0 chr1 138102088 138102136 -59093296 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 1638 1058 78 0 7 chr1 138102154 138102296 -59093136 + B1_Mus1 SINE Alu 2 142 -6 1 1638 189 74 0 0 chr1 138102298 138102325 -59093107 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1638 326 250 91 0 chr1 138102327 138102415 -59093017 - B1F SINE Alu -51 98 3 1 1638 1801 74 4 26 chr1 138102784 138103048 -59092384 - L1_Mus2 LINE L1 0 6566 6309 1 1638 260 247 82 0 chr1 138103724 138103797 -59091635 - ID4 SINE ID -2 81 3 1 1638 1276 75 37 11 chr1 138103813 138104002 -59091430 - B2_Mm2 SINE B2 0 195 2 1 1638 185 294 116 58 chr1 138106031 138106186 -59089246 + MIRb SINE MIR 57 220 -48 1 1638 556 296 13 46 chr1 138106209 138106371 -59089061 + ID_B1 SINE B4 84 244 -48 1 1638 664 264 8 87 chr1 138106525 138106766 -59088666 + ID_B1 SINE B4 2 223 -1 1 1638 490 282 13 53 chr1 138106794 138106944 -59088488 + B1F1 SINE Alu 6 149 0 1 1638 258 322 92 40 chr1 138106947 138107099 -59088333 - L2 LINE L2 -862 2557 2398 1 1638 334 233 163 0 chr1 138107108 138107194 -59088238 + PB1D10 SINE Alu 5 104 -13 1 1638 409 172 11 11 chr1 138107195 138107289 -59088143 + GA-rich Low_complexity Low_complexity 2 95 0 1 1638 493 342 27 0 chr1 138107293 138107439 -59087993 + RSINE1 SINE B4 4 153 -12 1 1638 650 227 6 0 chr1 138108162 138108325 -59087107 + GA-rich Low_complexity Low_complexity 2 165 0 1 1638 230 207 0 94 chr1 138108923 138108987 -59086445 + B2_Mm2 SINE B2 1 58 -137 1 1638 365 258 22 0 chr1 138108962 138109051 -59086381 + B3 SINE B2 99 189 -27 1 1638 246 259 0 0 chr1 138109111 138109165 -59086267 + ID4_ SINE ID 28 81 -2 1 1638 534 43 0 0 chr1 138111647 138111716 -59083716 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1638 277 265 99 52 chr1 138111749 138111948 -59083484 - MIR SINE MIR -43 219 11 1 1638 361 298 63 111 chr1 138113296 138113435 -59081997 - MER2 DNA MER2_type -80 265 117 1 1638 266 289 26 13 chr1 138113435 138113512 -59081920 + ID4_ SINE ID 2 79 -4 1 1638 361 298 63 111 chr1 138113512 138113556 -59081876 - MER2 DNA MER2_type -229 116 83 1 1638 925 183 194 0 chr1 138113556 138113736 -59081696 - B3 SINE B2 0 216 2 1 1638 361 298 63 111 chr1 138113736 138113804 -59081628 - MER2 DNA MER2_type -263 82 25 1 1638 225 348 32 11 chr1 138114221 138114313 -59081119 - MER82 DNA MER2_type 0 653 560 1 1638 1529 243 26 32 chr1 138114313 138114691 -59080741 + MTEa LTR MaLR 1 376 -3 1 1638 299 231 55 55 chr1 138114775 138114885 -59080547 + PB1D10 SINE Alu 6 115 -2 1 1638 591 15 0 0 chr1 138115040 138115108 -59080324 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 1 1638 726 239 74 53 chr1 138115110 138115300 -59080132 - MTEb LTR MaLR -63 316 123 1 1638 517 168 119 18 chr1 138115378 138115487 -59079945 - B1_Mur3 SINE Alu -1 148 29 1 1638 212 232 240 104 chr1 138115386 138115511 -59079921 - B4A SINE B4 -73 219 78 1 1638 543 287 48 0 chr1 138115508 138115675 -59079757 - MER82 DNA MER2_type -287 366 192 1 1638 1387 156 0 30 chr1 138115720 138115952 -59079480 - URR1B DNA MER1_type 0 225 1 1 1638 288 245 0 0 chr1 138115967 138116020 -59079412 - MER82 DNA MER2_type -600 53 1 1 1638 225 339 166 22 chr1 138118443 138118666 -59076766 - MIR SINE MIR 0 262 8 1 1638 968 129 13 39 chr1 138118769 138118922 -59076510 + B1_Mur4 SINE Alu 2 150 0 1 1638 586 270 75 20 chr1 138118928 138119128 -59076304 + MER58A DNA MER1_type 2 212 -12 1 1638 424 272 101 31 chr1 138119764 138119893 -59075539 - MER3 DNA MER1_type -71 138 1 1 1638 315 0 0 0 chr1 138126384 138126419 -59069013 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1638 372 196 10 104 chr1 138127456 138127595 -59067837 + PB1 SINE Alu 5 118 -2 1 1638 189 0 0 0 chr1 138127597 138127618 -59067814 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 1638 261 0 0 0 chr1 138129167 138129196 -59066236 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1638 22 0 0 0 chr1 138130510 138130532 -59064900 + GC_rich Low_complexity Low_complexity 1 22 0 1 1638 22426 123 29 8 chr1 138131545 138135053 -59060379 + MERVL_2A-int LTR ERVL 1993 5688 -73 1 1638 451 148 0 36 chr1 138135054 138135138 -59060294 + MTEb-int LTR MaLR 560 640 -1323 1 1638 270 53 0 0 chr1 138135138 138135176 -59060256 + MERVL-int LTR ERVL 5448 5485 0 1 1638 2328 161 238 10 chr1 138135176 138135203 -59060229 + MT2B LTR ERVL 1 24 -577 1 1638 2215 135 6 6 chr1 138135203 138135530 -59059902 + ORR1A2 LTR MaLR 1 327 0 1 1638 2328 161 238 10 chr1 138135530 138135990 -59059442 + MT2B LTR ERVL 25 599 -2 1 1638 235 196 0 38 chr1 138136065 138136118 -59059314 + MTE2b LTR MaLR 1 51 -328 1 1638 328 24 0 0 chr1 138136106 138136147 -59059285 - ORR1B1 LTR MaLR -349 45 5 1 1638 2551 235 125 20 chr1 138136176 138136397 -59059035 + MTEb-int LTR MaLR 826 1065 -515 1 1638 1435 239 105 83 chr1 138136397 138136586 -59058846 + MT2B LTR ERVL 1 200 -401 1 1638 1405 80 16 0 chr1 138136586 138136773 -59058659 - B2_Mm2 SINE B2 -4 191 2 1 1638 1435 239 105 83 chr1 138136773 138137113 -59058319 + MT2B LTR ERVL 201 549 -52 1 1638 210 118 0 0 chr1 138137113 138137147 -59058285 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1638 1435 239 105 83 chr1 138137147 138137204 -59058228 + MT2B LTR ERVL 550 601 0 1 1638 2551 235 125 20 chr1 138137204 138137458 -59057974 + MTEb-int LTR MaLR 1066 1351 -229 1 1638 423 0 0 0 chr1 138137458 138137505 -59057927 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 1638 2551 235 125 20 chr1 138137505 138137710 -59057722 + MTEb-int LTR MaLR 1352 1577 -3 1 1638 709 233 35 11 chr1 138137712 138137886 -59057546 + MTEb LTR MaLR 1 178 -201 1 1638 420 234 149 0 chr1 138139396 138139490 -59055942 - PB1D10 SINE Alu -6 111 4 1 1638 849 254 65 0 chr1 138139764 138139965 -59055467 + MTEb LTR MaLR 163 376 -3 1 1638 1157 138 26 21 chr1 138140432 138140625 -59054807 - B2_Mm2 SINE B2 -1 194 1 1 1638 508 252 138 128 chr1 138140628 138140910 -59054522 + MLT1A LTR MaLR 1 296 -78 1 1638 458 222 0 100 chr1 138140956 138141053 -59054379 - B1_Mur1 SINE Alu 0 149 64 1 1638 2822 144 40 20 chr1 138141053 138141146 -59054286 - RLTR16 LTR ERVK 0 505 402 1 1638 330 26 0 0 chr1 138141146 138141185 -59054247 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1638 297 0 0 0 chr1 138141185 138141217 -59054215 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1638 2822 144 40 20 chr1 138141217 138141617 -59053815 - RLTR16 LTR ERVK -104 401 2 1 1638 458 222 0 100 chr1 138141617 138141639 -59053793 - B1_Mur1 SINE Alu -86 63 42 1 1638 209 13 11 144 chr1 138141654 138141835 -59053597 + (CTCTG)n Simple_repeat Simple_repeat 4 160 0 1 1638 180 77 0 0 chr1 138141887 138141913 -59053519 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1638 565 284 272 27 chr1 138141977 138142275 -59053157 - MTEa LTR MaLR -8 371 1 1 1638 2218 101 30 0 chr1 138142633 138142971 -59052461 - ORR1A2-int LTR MaLR -1615 348 1 2 1638 2696 64 3 0 chr1 138142971 138143297 -59052135 - ORR1A2 LTR MaLR 0 327 1 2 1638 207 0 0 0 chr1 138143333 138143356 -59052076 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1638 689 190 65 7 chr1 138143416 138143554 -59051878 + B1_Mur4 SINE Alu 5 150 0 2 1638 182 91 30 0 chr1 138145770 138145803 -59049629 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2 1638 207 0 0 0 chr1 138145803 138145825 -59049607 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1638 280 103 0 0 chr1 138145952 138145991 -59049441 + ZP3AR Satellite Satellite 43 81 -131 2 1638 234 224 48 79 chr1 138145958 138146021 -59049411 + tRNA-Ala-GCY_ tRNA tRNA 1 61 -14 2 1638 180 0 0 0 chr1 138146173 138146193 -59049239 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1638 1130 226 5 5 chr1 138146764 138146973 -59048459 - ID_B1 SINE B4 -12 212 4 2 1638 758 189 16 0 chr1 138147307 138147434 -59047998 + B1_Mur3 SINE Alu 13 141 -8 2 1638 217 200 22 0 chr1 138147435 138147480 -59047952 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1638 590 278 37 16 chr1 138147482 138147643 -59047789 - B3 SINE B2 -13 182 27 2 1638 280 48 62 16 chr1 138147643 138147707 -59047725 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 1638 1194 56 7 0 chr1 138147714 138147856 -59047576 - B1_Mm SINE Alu 0 147 5 2 1638 369 0 0 0 chr1 138148041 138148082 -59047350 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 1638 256 333 89 0 chr1 138148291 138148414 -59047018 - MIR SINE MIR -21 241 108 2 1638 1273 168 5 18 chr1 138148847 138149065 -59046367 + B3 SINE B2 1 215 -1 2 1638 324 0 0 0 chr1 138149074 138149110 -59046322 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1638 249 296 184 0 chr1 138149596 138149694 -59045738 + PB1D10 SINE Alu 2 117 0 2 204 514 158 73 73 chr1 138149868 138149991 -59045441 + B1F SINE Alu 27 149 0 2 1639 703 279 128 3 chr1 138149994 138150282 -59045150 + Lx8 LINE L1 6900 7223 -250 2 1639 685 160 157 84 chr1 138150411 138150589 -59044843 - B3A SINE B2 -6 192 2 2 1639 414 0 0 0 chr1 138150824 138150870 -59044562 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1639 282 272 70 0 chr1 138150954 138151046 -59044386 - PB1D10 SINE Alu -46 103 4 2 1639 212 86 29 0 chr1 138151180 138151215 -59044217 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1639 797 250 35 4 chr1 138151246 138151475 -59043957 - Lx8 LINE L1 -564 6909 6674 2 1639 473 178 44 0 chr1 138151475 138151565 -59043867 + MT2B LTR ERVL 1 94 -507 2 1639 221 231 0 44 chr1 138152091 138152159 -59043273 + CT-rich Low_complexity Low_complexity 1 65 0 2 1639 202 357 186 0 chr1 138152333 138152532 -59042900 - MIRc SINE MIR -17 251 16 2 1639 1394 217 106 77 chr1 138152988 138153056 -59042376 + MTD LTR MaLR 2 53 -366 2 1639 1019 106 35 105 chr1 138153056 138153256 -59042176 - B2_Mm2 SINE B2 -8 187 2 2 1639 1394 217 106 77 chr1 138153256 138153591 -59041841 + MTD LTR MaLR 54 417 -2 2 1639 266 68 45 0 chr1 138154257 138154301 -59041131 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 2 1639 1172 62 7 0 chr1 138154607 138154752 -59040680 - B1_Mus2 SINE Alu 0 147 2 2 1639 560 189 6 36 chr1 138155820 138155985 -59039447 + G-rich Low_complexity Low_complexity 6 165 0 2 1639 252 268 0 0 chr1 138159157 138159213 -59036219 - MER94 DNA AcHobo 0 134 79 2 1639 606 292 34 0 chr1 138159545 138159692 -59035740 + RSINE1 SINE B4 3 154 -11 2 1639 594 93 0 0 chr1 138159706 138159792 -59035640 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1639 253 299 15 15 chr1 138159830 138159898 -59035534 + MLT1B LTR MaLR 231 298 -92 2 1639 1909 184 83 60 chr1 138160922 138161401 -59034031 - Lx5 LINE L1 -7 7043 6554 2 1639 935 151 20 0 chr1 138161525 138161671 -59033761 - B1_Mur3 SINE Alu 0 149 1 2 1639 306 219 15 15 chr1 138164308 138164373 -59031059 - B1_Mur4 SINE Alu -85 65 1 2 1639 21 0 0 0 chr1 138164710 138164731 -59030701 + AT_rich Low_complexity Low_complexity 1 21 0 2 1639 760 171 0 0 chr1 138168358 138168475 -59026957 - B1_Mur2 SINE Alu -31 118 2 2 1639 330 236 50 109 chr1 138168372 138168491 -59026941 - MT2B LTR ERVL -344 257 146 2 1639 269 254 14 43 chr1 138168691 138168761 -59026671 - PB1D7 SINE Alu 0 120 53 2 1639 327 331 105 91 chr1 138168837 138169113 -59026319 + B4 SINE B4 5 284 -8 2 1639 828 228 109 21 chr1 138169216 138169409 -59026023 + B3 SINE B2 1 210 -6 2 1639 312 137 0 0 chr1 138169410 138169461 -59025971 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1639 249 108 0 0 chr1 138171039 138171076 -59024356 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1639 720 241 21 0 chr1 138171076 138171217 -59024215 - RSINE1 SINE B4 -20 145 2 2 1639 28 48 0 0 chr1 138171284 138171326 -59024106 + AT_rich Low_complexity Low_complexity 1 42 0 2 1639 300 27 0 0 chr1 138171728 138171765 -59023667 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1639 1026 228 48 5 chr1 138171833 138172040 -59023392 - B3 SINE B2 0 216 1 2 1639 254 281 101 0 chr1 138172100 138172189 -59023243 + B1F SINE Alu 14 111 -38 2 1639 255 316 53 0 chr1 138172261 138172337 -59023095 - ID4 SINE ID -2 81 2 2 1639 743 298 14 47 chr1 138172650 138172865 -59022567 + ID_B1 SINE B4 6 213 -11 2 1639 441 257 70 63 chr1 138174097 138174255 -59021177 - RSINE1 SINE B4 -3 162 4 2 1639 555 310 6 19 chr1 138174292 138174450 -59020982 - RSINE1 SINE B4 -8 157 2 2 1639 270 0 0 0 chr1 138176527 138176557 -59018875 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1639 213 233 47 0 chr1 138179610 138179653 -59015779 + ID2 SINE ID 28 72 -11 2 1639 894 114 84 67 chr1 138179687 138179865 -59015567 - B2_Mm2 SINE B2 -14 181 1 2 1639 222 324 14 0 chr1 138179905 138179979 -59015453 + B1_Mus1 SINE Alu 10 84 -64 2 1639 706 275 22 14 chr1 138180041 138180221 -59015211 + ID_B1 SINE B4 82 267 -25 2 1639 253 301 0 61 chr1 138180203 138180293 -59015139 + ID4 SINE ID 8 92 -60 2 1639 421 264 98 8 chr1 138181949 138182071 -59013361 + RSINE1 SINE B4 1 133 -32 2 1639 304 204 143 34 chr1 138183709 138183807 -59011625 - BC1_Mm scRNA scRNA -48 104 3 2 1639 747 152 72 43 chr1 138184210 138184348 -59011084 + B1_Mur4 SINE Alu 1 142 -8 2 1639 209 219 24 0 chr1 138185554 138185595 -59009837 - L2 LINE L2 -842 2577 2536 2 1639 21 0 0 0 chr1 138186641 138186662 -59008770 + AT_rich Low_complexity Low_complexity 1 21 0 2 1639 746 234 0 0 chr1 138186722 138186863 -59008569 - B1_Mur1 SINE Alu -7 142 2 2 1639 441 294 17 8 chr1 138187075 138187195 -59008237 - MER2 DNA MER2_type -5 340 220 2 1639 379 317 10 0 chr1 138187198 138187302 -59008130 - RSINE1 SINE B4 -60 105 1 2 1639 270 184 117 13 chr1 138187311 138187388 -59008044 - MER2 DNA MER2_type -132 213 129 2 1639 200 31 0 59 chr1 138187516 138187550 -59007882 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 2 1639 615 213 115 6 chr1 138188451 138188616 -59006816 + L1M2 LINE L1 4520 4702 -1441 2 1639 218 337 58 11 chr1 138188655 138188742 -59006690 + B4A SINE B4 32 122 -170 2 1639 300 211 0 0 chr1 138188742 138188818 -59006614 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1639 223 200 71 0 chr1 138189259 138189329 -59006103 - B1F1 SINE Alu -35 114 40 2 1639 917 88 0 0 chr1 138190214 138190339 -59005093 - B1_Mus2 SINE Alu 0 147 23 2 1639 708 104 9 9 chr1 138190789 138190896 -59004536 + B1_Mur4 SINE Alu 44 150 0 2 1639 694 284 64 17 chr1 138190956 138191192 -59004240 + MIRb SINE MIR 20 266 -2 2 1639 756 229 101 0 chr1 138191322 138191510 -59003922 - B3 SINE B2 -6 210 4 2 1639 621 217 12 173 chr1 138192430 138192493 -59002939 - ID_B1 SINE B4 -26 198 152 2 1639 1222 68 0 0 chr1 138192493 138192640 -59002792 - B1_Mus1 SINE Alu 0 148 2 2 1639 621 217 12 173 chr1 138192640 138192749 -59002683 - ID_B1 SINE B4 -73 151 54 2 1639 227 148 16 47 chr1 138192870 138192934 -59002498 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 2 1639 844 266 25 5 chr1 138192946 138193146 -59002286 - B3 SINE B2 -11 205 2 2 1639 22 0 0 0 chr1 138193531 138193553 -59001879 + AT_rich Low_complexity Low_complexity 1 22 0 2 1639 1087 62 15 0 chr1 138193579 138193709 -59001723 + B1_Mus2 SINE Alu 2 133 -14 2 1639 185 0 0 39 chr1 138193709 138193735 -59001697 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 1639 4284 130 91 48 chr1 138194477 138195401 -59000031 + RMER17B LTR ERVK 1 958 0 2 1639 491 231 218 103 chr1 138195902 138196229 -58999203 + MTE2a LTR MaLR 41 419 0 2 1639 1253 118 138 5 chr1 138196391 138196587 -58998845 - URR1A DNA MER1_type -2 224 3 2 1639 319 359 8 23 chr1 138196954 138197085 -58998347 + L1_Rod LINE L1 1795 1923 -3924 2 1639 328 276 43 43 chr1 138197089 138197229 -58998203 + L1_Rod LINE L1 2104 2243 -3604 2 1639 729 217 7 0 chr1 138197231 138197369 -58998063 + B1_Mus1 SINE Alu 5 143 -5 2 1639 186 71 0 0 chr1 138197373 138197401 -58998031 + (CAAAG)n Simple_repeat Simple_repeat 1 28 0 2 1639 809 153 128 12 chr1 138197444 138197616 -58997816 - URR1A DNA MER1_type -5 221 30 2 1639 3281 283 80 31 chr1 138197623 138199208 -58996224 + L1_Mur3 LINE L1 2243 3904 -1976 2 1639 247 228 23 36 chr1 138199231 138199324 -58996108 + L1_Mur3 LINE L1 5279 5377 -503 2 1639 644 215 33 22 chr1 138199395 138199576 -58995856 - Lx8 LINE L1 -719 6754 6572 2 1639 1159 232 87 0 chr1 138199579 138199868 -58995564 + Lx8 LINE L1 6777 7090 -383 2 1639 242 339 92 30 chr1 138199870 138200001 -58995431 - B4A SINE B4 -152 140 2 2 1639 524 252 0 0 chr1 138200144 138200247 -58995185 + PB1D9 SINE Alu 10 112 -8 2 1639 371 292 18 36 chr1 138200611 138200721 -58994711 - PB1D10 SINE Alu -9 108 1 2 1639 293 287 46 15 chr1 138201942 138202073 -58993359 - L1M LINE L1 -725 5399 5265 3 1639 1279 59 106 0 chr1 138202382 138202552 -58992880 - B2_Mm2 SINE B2 -7 188 1 3 1639 783 64 0 35 chr1 138202582 138202695 -58992737 + B2_Mm1a SINE B2 85 193 0 3 1639 181 238 127 0 chr1 138203001 138203064 -58992368 - MIR SINE MIR -68 194 124 3 1639 1327 41 0 0 chr1 138203291 138203438 -58991994 + B1_Mus1 SINE Alu 2 148 0 3 1639 713 289 111 23 chr1 138203654 138203870 -58991562 + B4A SINE B4 1 235 -57 3 1639 242 261 0 0 chr1 138204595 138204641 -58990791 + ID_B1 SINE B4 172 217 -7 3 1639 344 227 53 0 chr1 138204643 138204718 -58990714 + ID4 SINE ID 5 83 0 3 1639 2187 116 115 3 chr1 138204747 138205077 -58990355 + ORR1B2 LTR MaLR 1 367 0 3 1639 1096 285 192 30 chr1 138205094 138206636 -58988796 + L1MA5A LINE L1 3773 5585 -712 3 1639 1615 181 106 32 chr1 138206636 138206984 -58988448 - ORR1D1 LTR MaLR 0 374 1 3 1639 793 271 154 18 chr1 138206984 138207200 -58988232 + L1MA5A LINE L1 5586 5851 -449 3 1639 662 258 139 20 chr1 138207596 138207841 -58987591 + RMER5 LTR ERV1 238 511 -23 3 1639 356 200 144 0 chr1 138208449 138208539 -58986893 - PB1D10 SINE Alu -6 111 9 3 1639 281 253 149 39 chr1 138208588 138208783 -58986649 - MTEb LTR MaLR -15 359 169 3 1639 314 248 57 85 chr1 138209602 138209743 -58985689 + MER65-int LTR ERV1 4178 4314 -557 3 1639 3384 51 8 0 chr1 138209837 138210230 -58985202 + MTA_Mm LTR MaLR 1 396 0 3 1639 304 336 76 28 chr1 138210264 138210555 -58984877 + MER65-int LTR ERV1 4503 4807 -64 3 1639 222 146 24 0 chr1 138210769 138210810 -58984622 + CT-rich Low_complexity Low_complexity 2 43 0 3 1639 261 163 0 0 chr1 138210849 138210898 -58984534 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1639 301 275 128 69 chr1 138210898 138211101 -58984331 + L1M5 LINE L1 3768 3982 -2164 3 1639 241 272 87 0 chr1 138211183 138211286 -58984146 + L1M5 LINE L1 4629 4740 -1406 3 1639 230 308 120 13 chr1 138211374 138211532 -58983900 + L1MA5A LINE L1 5973 6147 -153 3 1639 410 343 84 23 chr1 138211547 138211762 -58983670 + B4A SINE B4 57 284 -8 3 1639 204 40 0 0 chr1 138211830 138211855 -58983577 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1639 541 291 24 0 chr1 138211868 138212033 -58983399 + L1MA5 LINE L1 6130 6298 -2 3 1639 2073 179 25 19 chr1 138213003 138213368 -58982064 + ORR1B2 LTR MaLR 1 367 0 3 1639 200 305 67 17 chr1 138213547 138213607 -58981825 - L2b LINE L2 -47 3328 3266 3 1639 340 226 47 23 chr1 138213765 138213851 -58981581 + B3 SINE B2 128 215 -1 3 1639 306 339 7 10 chr1 138213863 138213988 -58981444 + B4 SINE B4 80 206 -86 3 1639 593 222 23 38 chr1 138214734 138214865 -58980567 + RSINE1 SINE B4 1 129 -36 3 1639 248 143 0 18 chr1 138214936 138214993 -58980439 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1639 23 0 0 0 chr1 138215103 138215126 -58980306 + AT_rich Low_complexity Low_complexity 1 23 0 3 1639 404 209 23 23 chr1 138215249 138215337 -58980095 + B3A SINE B2 1 88 -110 3 1639 198 0 0 0 chr1 138215688 138215710 -58979722 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1639 423 56 0 0 chr1 138215778 138215832 -58979600 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1639 363 316 74 41 chr1 138216388 138216510 -58978922 + B1F SINE Alu 10 135 -14 3 1639 1169 115 81 0 chr1 138216601 138216775 -58978657 - B2_Mm2 SINE B2 -7 188 1 3 1639 622 267 34 0 chr1 138216905 138217081 -58978351 + ID_B1 SINE B4 1 182 -42 3 1639 1437 67 50 0 chr1 138217265 138217444 -58977988 - B2_Mm2 SINE B2 -7 188 1 3 1639 967 172 21 0 chr1 138217572 138217717 -58977715 + B1_Mur2 SINE Alu 2 149 0 3 1639 234 0 0 0 chr1 138218084 138218110 -58977322 + (CTA)n Simple_repeat Simple_repeat 1 26 0 3 1639 582 280 101 6 chr1 138218129 138218298 -58977134 + B3 SINE B2 24 208 -8 3 1639 191 61 30 0 chr1 138218540 138218573 -58976859 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1639 1187 36 50 0 chr1 138218574 138218713 -58976719 - B1_Mus2 SINE Alu 0 147 2 3 1639 288 307 42 34 chr1 138219952 138220070 -58975362 - B4A SINE B4 -117 175 57 3 1639 754 175 101 31 chr1 138220384 138220543 -58974889 - B3 SINE B2 -46 170 1 3 1639 656 288 74 42 chr1 138220583 138220866 -58974566 - B4A SINE B4 0 292 1 3 1639 254 288 13 76 chr1 138220877 138220956 -58974476 - ID4_ SINE ID -3 80 7 3 1639 25 75 0 0 chr1 138221052 138221105 -58974327 + AT_rich Low_complexity Low_complexity 1 53 0 3 1639 243 0 0 0 chr1 138221917 138221944 -58973488 + (CAGT)n Simple_repeat Simple_repeat 1 27 0 3 1639 1018 246 111 3 chr1 138222415 138222712 -58972720 + ORR1D2 LTR MaLR 1 354 -5 3 1639 2064 143 74 0 chr1 138222713 138223077 -58972355 + ORR1B1 LTR MaLR 4 394 0 3 1639 213 335 103 19 chr1 138223111 138223266 -58972166 - L2 LINE L2 -915 2504 2337 3 1639 1741 184 93 0 chr1 138223673 138224048 -58971384 - MTD LTR MaLR -9 410 1 3 1639 381 189 56 0 chr1 138224350 138224440 -58970992 - B1_Mur3 SINE Alu -54 95 1 3 1639 326 42 0 0 chr1 138224669 138224717 -58970715 + B1_Mur4 SINE Alu 103 150 0 3 1639 756 333 129 11 chr1 138224814 138224950 -58970482 + Lx8 LINE L1 6802 6966 -507 3 1639 1156 152 64 32 chr1 138224950 138225168 -58970264 - URR1B DNA MER1_type 0 225 1 3 1639 756 333 129 11 chr1 138225168 138225556 -58969876 + Lx8 LINE L1 6967 7388 -85 3 1639 1198 54 0 0 chr1 138225703 138225850 -58969582 + B1_Mm SINE Alu 1 147 0 3 1639 225 236 19 136 chr1 138226503 138226606 -58968826 + RSINE1 SINE B4 5 95 -70 3 1639 465 242 130 64 chr1 138227364 138227673 -58967759 + L1MC4 LINE L1 6831 7295 -747 3 1639 852 270 19 0 chr1 138227673 138227884 -58967548 + B3 SINE B2 1 215 -1 3 1639 465 251 213 39 chr1 138227884 138228109 -58967323 + L1MC4 LINE L1 7296 7565 -477 3 1639 234 266 198 51 chr1 138228832 138229065 -58966367 + L1MC4 LINE L1 7556 7833 -209 3 1639 1495 17 79 0 chr1 138229065 138229224 -58966208 + B2_Mm1a SINE B2 2 160 -33 3 1639 207 0 0 0 chr1 138229224 138229247 -58966185 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1639 1495 17 79 0 chr1 138229247 138229265 -58966167 + B2_Mm1a SINE B2 161 191 -2 3 1639 234 266 198 51 chr1 138229265 138229304 -58966128 + L1MC4 LINE L1 7834 7868 -174 3 1639 773 252 18 154 chr1 138229663 138230001 -58965431 + B4A SINE B4 1 292 0 3 1639 30 0 0 0 chr1 138230003 138230033 -58965399 + AT_rich Low_complexity Low_complexity 1 30 0 3 1639 21 0 0 0 chr1 138230334 138230355 -58965077 + AT_rich Low_complexity Low_complexity 1 21 0 3 1639 232 219 60 24 chr1 138231321 138231405 -58964027 + L1MC5 LINE L1 7302 7388 -573 3 1639 315 0 0 0 chr1 138231856 138231891 -58963541 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1639 605 323 49 53 chr1 138231937 138232241 -58963191 - Lx7 LINE L1 -1803 5893 5591 3 1639 1116 108 0 0 chr1 138232385 138232533 -58962899 + B1_Mus1 SINE Alu 1 148 0 3 1639 254 248 78 15 chr1 138232964 138233075 -58962357 + MLT1K LTR MaLR 474 580 -30 3 1639 542 312 7 7 chr1 138236773 138236918 -58958514 - RSINE1 SINE B4 -17 148 4 3 1639 867 116 112 39 chr1 138237221 138237400 -58958032 + B2_Mm2 SINE B2 1 192 -3 3 1639 329 248 223 39 chr1 138237639 138237845 -58957587 + MIR SINE MIR 18 261 -1 3 1639 267 200 0 48 chr1 138238067 138238130 -58957302 + B4A SINE B4 1 60 -232 3 1639 213 355 37 0 chr1 138238306 138238413 -58957019 + PB1D7 SINE Alu 1 111 -9 3 1639 381 22 0 0 chr1 138238413 138238459 -58956973 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1639 534 223 28 78 chr1 138238471 138238612 -58956820 + B1_Mur1 SINE Alu 2 135 -14 3 1639 378 57 0 0 chr1 138238612 138238665 -58956767 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 3 1639 324 0 0 0 chr1 138238667 138238703 -58956729 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1639 437 254 8 54 chr1 138238975 138239104 -58956328 + ID_B1 SINE B4 102 224 0 3 1639 487 250 76 38 chr1 138239344 138239502 -58955930 + RSINE1 SINE B4 2 165 0 3 1639 756 141 219 6 chr1 138239740 138239918 -58955514 + B3 SINE B2 1 216 0 3 1639 484 254 103 0 chr1 138239965 138240091 -58955341 + B1F1 SINE Alu 5 143 -6 3 1639 351 65 0 0 chr1 138240105 138240151 -58955281 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1639 26 30 0 0 chr1 138242152 138242185 -58953247 + GC_rich Low_complexity Low_complexity 1 33 0 3 1639 26 0 0 0 chr1 138242719 138242745 -58952687 + GC_rich Low_complexity Low_complexity 1 26 0 3 1639 184 186 0 44 chr1 138243385 138243430 -58952002 + L2b LINE L2 3114 3156 -219 3 1639 229 330 110 0 chr1 138243709 138243809 -58951623 - MIRb SINE MIR -115 153 43 3 1639 214 299 29 78 chr1 138244183 138244339 -58951093 - MIRc SINE MIR -95 167 18 3 1639 603 245 7 34 chr1 138245473 138245621 -58949811 + ID_B1 SINE B4 81 224 0 3 1639 898 173 0 7 chr1 138245684 138245835 -58949597 - B1_Mur4 SINE Alu 0 150 1 3 1639 560 278 81 20 chr1 138245956 138246154 -58949278 + ID_B1 SINE B4 12 221 -3 3 1639 196 211 13 13 chr1 138246154 138246231 -58949201 + GA-rich Low_complexity Low_complexity 2 78 0 3 1639 342 0 0 0 chr1 138246246 138246284 -58949148 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1639 199 234 188 38 chr1 138246357 138246437 -58948995 - MIRb SINE MIR -56 212 121 3 1639 220 316 70 0 chr1 138246628 138246685 -58948747 + ID4 SINE ID 1 61 -22 3 1639 369 0 0 0 chr1 138246694 138246735 -58948697 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1639 318 257 26 26 chr1 138247934 138248010 -58947422 + ID4_ SINE ID 4 79 -4 3 1639 429 141 0 0 chr1 138248444 138248515 -58946917 + (TCC)n Simple_repeat Simple_repeat 1 71 0 3 1639 345 242 53 0 chr1 138248567 138248662 -58946770 - PB1D10 SINE Alu -9 108 9 3 1639 249 33 0 0 chr1 138248816 138248846 -58946586 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1639 275 191 59 0 chr1 138248972 138249040 -58946392 + B2_Mm2 SINE B2 2 73 -122 4 1639 358 82 0 0 chr1 138249045 138249094 -58946338 + HAL1-3A_ME LINE L1 1975 2023 -835 4 1639 346 72 0 55 chr1 138249094 138249167 -58946265 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 4 1639 493 240 6 6 chr1 138249878 138250054 -58945378 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1639 634 167 48 55 chr1 138252466 138252612 -58942820 + B1_Mur3 SINE Alu 5 149 0 4 1639 207 88 0 0 chr1 138252667 138252701 -58942731 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 1639 1036 38 0 0 chr1 138252702 138252833 -58942599 - B1_Mus1 SINE Alu -10 138 8 4 1639 268 231 97 0 chr1 138252732 138252866 -58942566 - ORR1B1-int LTR MaLR -755 754 608 4 1639 30 69 0 0 chr1 138253005 138253063 -58942369 + AT_rich Low_complexity Low_complexity 1 58 0 4 1639 209 114 29 0 chr1 138253134 138253169 -58942263 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 4 1639 481 240 154 0 chr1 138253184 138253359 -58942073 - B3 SINE B2 0 216 15 4 1639 569 259 22 0 chr1 138253399 138253534 -58941898 - B1F SINE Alu -11 138 1 4 1639 251 275 0 14 chr1 138253613 138253683 -58941749 - ID4 SINE ID 0 83 15 4 1639 632 259 33 22 chr1 138254075 138254290 -58941142 - B3A SINE B2 -1 197 3 4 1639 243 0 0 0 chr1 138254301 138254328 -58941104 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1639 2180 111 14 6 chr1 138254328 138254667 -58940765 - Lx2 LINE L1 -28 6969 6627 4 1639 1495 58 11 0 chr1 138254822 138255011 -58940421 + B2_Mm1t SINE B2 1 191 -2 4 1639 735 285 219 22 chr1 138255314 138255770 -58939662 + MLT1F1 LTR MaLR 22 567 -2 4 1639 201 268 0 27 chr1 138255899 138255972 -58939460 + CT-rich Low_complexity Low_complexity 1 71 0 4 1639 1992 122 47 39 chr1 138256613 138256972 -58938460 + Lx LINE L1 6273 6634 -20 4 1639 853 123 14 0 chr1 138257815 138257953 -58937479 + URR1B DNA MER1_type 86 225 0 4 1639 226 246 43 58 chr1 138258110 138258179 -58937253 + BC1_Mm scRNA scRNA 1 68 -84 4 1639 740 307 58 4 chr1 138258217 138258475 -58936957 + B4A SINE B4 1 272 -20 4 1639 29 0 0 0 chr1 138258874 138258903 -58936529 + AT_rich Low_complexity Low_complexity 1 29 0 4 1639 342 61 0 0 chr1 138260286 138260335 -58935097 + (CATCC)n Simple_repeat Simple_repeat 2 50 0 4 1639 828 275 89 29 chr1 138261150 138261465 -58933967 + MTC LTR MaLR 1 334 -87 4 1639 1279 110 193 29 chr1 138261465 138261745 -58933687 + LSU-rRNA_Hsa rRNA rRNA 4589 4914 -121 4 1639 492 121 2 32 chr1 138261745 138261849 -58933583 + MTC LTR MaLR 323 421 0 4 1639 643 226 79 28 chr1 138261868 138262082 -58933350 + MTD LTR MaLR 115 339 -80 4 1639 359 41 20 0 chr1 138262126 138262175 -58933257 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1639 371 298 50 67 chr1 138262567 138262747 -58932685 - RMER15 LTR ERVL -101 474 298 4 1639 4961 102 11 8 chr1 138263607 138264328 -58931104 - Lx2B LINE L1 -3 6997 6275 4 1639 194 0 39 0 chr1 138264331 138264357 -58931075 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1639 284 167 14 57 chr1 138264645 138264715 -58930717 - B3 SINE B2 0 216 150 4 1639 243 0 0 0 chr1 138264756 138264783 -58930649 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1639 1098 82 0 39 chr1 138265088 138265241 -58930191 - B1_Mus1 SINE Alu 0 148 2 4 1639 1218 166 19 5 chr1 138265268 138265480 -58929952 - B3 SINE B2 0 216 2 4 1639 228 259 0 0 chr1 138265493 138265547 -58929885 + CT-rich Low_complexity Low_complexity 1 54 0 4 1639 682 299 59 27 chr1 138265801 138266210 -58929222 - L1M5 LINE L1 -2423 3723 3302 4 1639 214 215 46 0 chr1 138266412 138266477 -58928955 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1639 439 290 129 70 chr1 138266489 138266760 -58928672 - B4A SINE B4 0 292 6 4 1639 306 0 0 0 chr1 138266822 138266856 -58928576 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1639 226 328 53 76 chr1 138266868 138267000 -58928432 - B1F1 SINE Alu -20 129 1 4 1639 423 0 0 0 chr1 138267092 138267139 -58928293 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1639 303 28 0 0 chr1 138267936 138267972 -58927460 + (GTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1639 269 233 0 0 chr1 138268632 138268692 -58926740 + RMER15 LTR ERVL 1 60 -515 4 1639 1672 212 175 19 chr1 138268776 138269251 -58926181 + RMER15 LTR ERVL 27 575 0 4 1639 386 175 12 0 chr1 138269323 138269403 -58926029 + GA-rich Low_complexity Low_complexity 3 83 0 4 1639 288 0 0 0 chr1 138269574 138269606 -58925826 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1639 342 355 67 18 chr1 138270134 138270358 -58925074 - MIRb SINE MIR -31 237 3 4 1639 560 232 21 0 chr1 138270403 138270545 -58924887 - MER57C2 LTR ERV1 -1 433 289 4 1639 314 268 0 35 chr1 138270771 138270856 -58924576 - ID4 SINE ID 0 83 2 4 1639 1011 217 14 19 chr1 138271229 138271445 -58923987 - B3 SINE B2 -1 215 1 4 1639 944 130 20 7 chr1 138271603 138271750 -58923682 - B1_Mur4 SINE Alu 0 150 2 4 1639 550 262 0 8 chr1 138271823 138271950 -58923482 - RSINE1 SINE B4 -38 127 2 4 1639 1783 82 28 21 chr1 138272150 138272435 -58922997 + RLTR27 LTR ERVK 1 287 -22 4 1639 348 260 54 47 chr1 138272435 138272564 -58922868 + B1F SINE Alu 2 131 -18 4 1639 324 0 0 0 chr1 138272568 138272604 -58922828 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1639 553 207 232 84 chr1 138272604 138272794 -58922638 + ID_B1 SINE B4 6 223 -1 4 1639 350 260 35 99 chr1 138272940 138273081 -58922351 - RSINE1 SINE B4 -30 135 4 4 1639 203 0 37 0 chr1 138273520 138273547 -58921885 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1639 195 42 0 0 chr1 138274634 138274658 -58920774 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1639 1892 142 169 0 chr1 138274739 138275076 -58920356 + ORR1B1 LTR MaLR 1 394 0 4 1639 249 201 0 72 chr1 138278840 138279006 -58916426 + CT-rich Low_complexity Low_complexity 2 155 0 4 1639 270 220 99 0 chr1 138279223 138279314 -58916118 - PB1D10 SINE Alu -1 116 17 4 1639 475 248 9 28 chr1 138279467 138279575 -58915857 - PB1D10 SINE Alu -11 106 1 4 1639 430 259 8 65 chr1 138279987 138280015 -58915417 - B4 SINE B4 0 292 270 4 1639 333 0 0 0 chr1 138280015 138280052 -58915380 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1639 430 259 8 65 chr1 138280052 138280147 -58915285 - B4 SINE B4 -23 269 176 4 1639 504 0 0 0 chr1 138280668 138280724 -58914708 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1639 219 157 0 0 chr1 138280807 138280858 -58914574 + CT-rich Low_complexity Low_complexity 2 52 0 4 1640 489 225 175 19 chr1 138281034 138281188 -58914244 - B3 SINE B2 0 216 39 4 1640 825 209 0 0 chr1 138281196 138281335 -58914097 + B1_Mur1 SINE Alu 1 139 -10 4 1640 221 98 48 24 chr1 138281376 138281418 -58914014 - B3A SINE B2 -153 45 3 4 1640 315 0 0 0 chr1 138281689 138281724 -58913708 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1640 380 312 128 59 chr1 138281743 138281947 -58913485 + B4A SINE B4 1 218 -74 4 1640 332 185 28 9 chr1 138282041 138282150 -58913282 + (CA)n Simple_repeat Simple_repeat 2 112 0 4 1640 384 123 0 0 chr1 138282170 138282243 -58913189 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 4 1640 231 152 43 0 chr1 138282259 138282305 -58913127 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1640 222 156 0 0 chr1 138282327 138282372 -58913060 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1640 891 249 5 65 chr1 138282400 138282615 -58912817 + ID_B1 SINE B4 15 216 -8 4 1640 252 259 71 0 chr1 138282627 138282712 -58912720 - L1MD2 LINE L1 -66 6176 6086 4 1640 1219 248 71 49 chr1 138282791 138283283 -58912149 - L1MD2 LINE L1 -270 6089 5587 4 1640 387 0 0 0 chr1 138283364 138283407 -58912025 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 4 1640 1203 37 12 6 chr1 138283407 138283568 -58911864 + (TCTCCC)n Simple_repeat Simple_repeat 5 167 0 4 1640 388 254 69 42 chr1 138283598 138283742 -58911690 - B1F SINE Alu -1 148 1 4 1640 637 295 145 47 chr1 138283785 138284482 -58910950 - L1MD2 LINE L1 -809 5337 4573 4 1640 310 67 67 0 chr1 138284500 138284560 -58910872 + (TTTTG)n Simple_repeat Simple_repeat 1 64 0 4 1640 1247 54 0 0 chr1 138284560 138284708 -58910724 - B1_Mus1 SINE Alu 0 148 1 4 1640 351 283 155 38 chr1 138284708 138284906 -58910526 - L1MD2 LINE L1 -1562 4584 4367 4 1640 853 180 208 0 chr1 138284906 138285084 -58910348 - B3 SINE B2 0 216 2 4 1640 351 283 155 38 chr1 138285084 138285124 -58910308 - L1MD2 LINE L1 -1780 4366 4319 4 1640 3353 147 97 5 chr1 138285139 138285719 -58909713 + RMER1B Other Other 432 1064 -2 4 1640 268 311 0 14 chr1 138285817 138285901 -58909531 - ID4_ SINE ID -2 81 2 4 1640 274 339 8 78 chr1 138286012 138286140 -58909292 + MLT1F1 LTR MaLR 3 121 -448 4 1640 36 91 0 0 chr1 138286790 138286889 -58908543 + AT_rich Low_complexity Low_complexity 1 99 0 4 1640 1085 97 0 0 chr1 138288082 138288227 -58907205 + B1_Mus2 SINE Alu 3 147 0 4 1640 389 259 17 50 chr1 138288339 138288457 -58906975 + B1F SINE Alu 1 112 -5 4 1640 243 0 0 0 chr1 138288468 138288495 -58906937 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4 1640 22 0 0 0 chr1 138288597 138288619 -58906813 + AT_rich Low_complexity Low_complexity 1 22 0 4 1640 933 194 19 0 chr1 138288653 138288813 -58906619 - RSINE1 SINE B4 0 165 3 4 1640 246 244 53 0 chr1 138289111 138289204 -58906228 + PB1D7 SINE Alu 1 100 -20 4 1640 375 276 20 2 chr1 138289742 138289858 -58905574 + B1F SINE Alu 24 139 -10 4 1640 952 189 11 0 chr1 138290221 138290396 -58905036 - B3 SINE B2 0 216 40 4 1640 241 219 27 0 chr1 138290466 138290539 -58904893 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1640 221 229 21 0 chr1 138290588 138290636 -58904796 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1640 739 267 0 6 chr1 138290697 138290859 -58904573 + RMER15-int LTR ERVL 4549 4709 -290 4 1640 225 0 0 0 chr1 138291017 138291042 -58904390 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1640 226 184 20 20 chr1 138291558 138291608 -58903824 + CT-rich Low_complexity Low_complexity 1 50 0 4 1640 263 302 66 16 chr1 138291743 138291864 -58903568 + RLTR12B LTR ERVK 117 243 -285 5 1640 360 0 0 0 chr1 138292390 138292430 -58903002 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1640 584 284 37 6 chr1 138293200 138293363 -58902069 + B3A SINE B2 5 172 -26 5 1640 536 192 9 28 chr1 138293446 138293553 -58901879 - ID_B1 SINE B4 -28 196 92 5 1640 231 114 0 0 chr1 138293804 138293839 -58901593 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1640 285 29 0 0 chr1 138293882 138293916 -58901516 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 5 1640 245 250 30 10 chr1 138293947 138294048 -58901384 + Tigger7 DNA MER2_type 2310 2412 -79 5 1640 303 93 0 0 chr1 138294054 138294097 -58901335 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1640 288 297 59 0 chr1 138294097 138294198 -58901234 + Tigger7 DNA MER2_type 2379 2485 -6 5 1640 1388 197 18 185 chr1 138294822 138295271 -58900161 - ORR1D1 LTR MaLR 0 374 1 5 1640 846 209 88 0 chr1 138295376 138295558 -58899874 - B3 SINE B2 -11 205 8 5 1640 227 31 0 30 chr1 138295778 138295811 -58899621 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 5 1640 3689 224 29 202 chr1 138296165 138297773 -58897659 + RMER1C Other Other 11 1339 -3 5 1640 783 229 45 5 chr1 138298169 138298371 -58897061 - B3 SINE B2 -6 210 1 5 1640 620 302 91 31 chr1 138298616 138299036 -58896396 - L1MB8 LINE L1 -50 6128 5684 5 1640 306 306 45 61 chr1 138299036 138299051 -58896381 - B1F1 SINE Alu -2 147 18 5 1640 450 263 26 26 chr1 138299051 138299168 -58896264 - ID_B1 SINE B4 -9 215 99 5 1640 1406 266 67 36 chr1 138299212 138300002 -58895430 - L1MB8 LINE L1 -573 5605 4781 5 1640 247 220 0 0 chr1 138300028 138300078 -58895354 + ID SINE ID 2 51 -173 5 1640 788 30 0 10 chr1 138300362 138300462 -58894970 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1640 197 180 20 0 chr1 138300580 138300630 -58894802 + CT-rich Low_complexity Low_complexity 3 53 0 5 1640 295 308 85 19 chr1 138300873 138300979 -58894453 + B3A SINE B2 2 114 -84 5 1640 305 285 10 46 chr1 138301059 138301215 -58894217 + B3A SINE B2 5 151 -65 5 1640 225 0 0 0 chr1 138301217 138301242 -58894190 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1640 530 286 29 98 chr1 138301551 138301756 -58893676 - B3A SINE B2 -6 192 2 5 1640 235 247 56 13 chr1 138302354 138302452 -58892980 + MIR SINE MIR 16 118 -150 5 1640 1239 41 0 0 chr1 138302479 138302626 -58892806 - B1_Mus2 SINE Alu 0 147 1 5 1640 243 180 60 0 chr1 138302635 138302685 -58892747 - L2c LINE L2 -5 3382 3330 5 1640 235 397 0 0 chr1 138303776 138303892 -58891540 + L1MC5 LINE L1 6624 6739 -1222 5 1640 423 137 0 0 chr1 138304054 138304127 -58891305 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1640 301 250 14 0 chr1 138304456 138304528 -58890904 + ID4_ SINE ID 1 73 -10 5 1640 629 241 27 7 chr1 138305214 138305360 -58890072 + B1_Mur2 SINE Alu 1 149 0 5 1640 309 185 0 0 chr1 138305753 138305818 -58889614 + CT-rich Low_complexity Low_complexity 2 66 0 5 1640 258 338 104 50 chr1 138305818 138306117 -58889315 + L2c LINE L2 3072 3386 -1 5 1640 1081 239 106 72 chr1 138307168 138307573 -58887859 - MTD LTR MaLR 0 419 1 5 1640 238 341 52 7 chr1 138307612 138307748 -58887684 + MIRb SINE MIR 89 230 -38 5 1640 228 296 24 47 chr1 138308136 138308221 -58887211 - B1F1 SINE Alu -65 84 2 5 1640 575 350 64 46 chr1 138308291 138308883 -58886549 + L1M5 LINE L1 4622 5224 -922 5 1640 350 272 17 17 chr1 138308951 138309067 -58886365 + L1MC4 LINE L1 7710 7825 -217 5 1640 1113 199 24 5 chr1 138309216 138309423 -58886009 + B3 SINE B2 1 211 -5 5 1640 2308 204 183 20 chr1 138309436 138310091 -58885341 - Lx7 LINE L1 0 7696 6935 5 1640 335 216 27 13 chr1 138310092 138310167 -58885265 - Lx6 LINE L1 -594 6866 6791 5 1640 532 232 65 7 chr1 138310473 138310612 -58884820 + ID_B1 SINE B4 78 224 0 5 1640 1360 63 40 0 chr1 138310920 138311094 -58884338 + B2_Mm2 SINE B2 1 181 -14 5 1640 259 211 35 0 chr1 138312559 138312616 -58882816 - ID2 SINE ID -22 61 3 5 1640 1009 156 0 45 chr1 138314382 138314583 -58880849 - B2_Mm2 SINE B2 -3 192 1 5 1640 34 0 0 0 chr1 138314595 138314629 -58880803 + AT_rich Low_complexity Low_complexity 1 34 0 5 1640 1223 54 0 0 chr1 138314629 138314776 -58880656 - B1_Mus1 SINE Alu 0 148 2 5 1640 213 250 13 53 chr1 138314821 138314897 -58880535 + PB1D10 SINE Alu 45 117 0 5 1640 744 250 11 0 chr1 138315140 138315316 -58880116 - B3 SINE B2 -12 204 27 5 1640 600 245 14 20 chr1 138316345 138316486 -58878946 + B1F SINE Alu 1 140 -9 5 1640 258 32 0 0 chr1 138316486 138316517 -58878915 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1640 1141 55 7 20 chr1 138317220 138317369 -58878063 + B1_Mus1 SINE Alu 2 148 0 5 1640 300 321 7 22 chr1 138317949 138318086 -58877346 - L1MC4a LINE L1 -159 7883 7749 5 1640 233 278 28 0 chr1 138318200 138318272 -58877160 + PB1D10 SINE Alu 9 82 -35 5 1640 2182 179 15 37 chr1 138318358 138318817 -58876615 + RLTR1D LTR ERV1 157 605 0 5 1640 676 270 35 0 chr1 138318896 138319070 -58876362 + MTE2a LTR MaLR 1 180 -199 5 1640 192 77 0 0 chr1 138319119 138319145 -58876287 + (CTG)n Simple_repeat Simple_repeat 1 26 0 5 1640 387 212 12 0 chr1 138319265 138319350 -58876082 + MTE2a LTR MaLR 294 379 0 5 1640 243 228 62 42 chr1 138319350 138319446 -58875986 - L1MC4a LINE L1 -408 7634 7537 5 1640 218 156 375 0 chr1 138319547 138319611 -58875821 - B3 SINE B2 -123 93 6 5 1640 340 296 23 31 chr1 138319789 138319918 -58875514 - B4A SINE B4 -164 128 1 5 1640 311 226 35 23 chr1 138320195 138320281 -58875151 - L1MC4a LINE L1 -558 7324 7238 5 1640 274 290 146 9 chr1 138320287 138320506 -58874926 - L1MC4a LINE L1 -978 7064 6816 5 1640 1398 94 5 0 chr1 138320559 138320751 -58874681 - B2_Mm2 SINE B2 0 195 3 5 1640 226 365 0 70 chr1 138320863 138320978 -58874454 + L2c LINE L2 3261 3367 -20 5 1640 526 205 18 9 chr1 138320991 138321104 -58874328 + PB1D10 SINE Alu 2 115 -2 5 1640 1144 55 14 0 chr1 138321108 138321253 -58874179 + B1_Mm SINE Alu 1 147 0 5 1640 306 73 0 0 chr1 138321253 138321294 -58874138 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1640 264 313 12 0 chr1 138321701 138321784 -58873648 + RSINE1 SINE B4 80 163 -2 5 1640 315 306 0 0 chr1 138321791 138321863 -58873569 + B4A SINE B4 218 289 -3 5 1640 254 304 0 0 chr1 138322200 138322269 -58873163 - ID4_ SINE ID -10 73 5 5 1640 186 43 0 0 chr1 138322511 138322534 -58872898 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1640 216 158 0 0 chr1 138322660 138322698 -58872734 + (TAA)n Simple_repeat Simple_repeat 1 38 0 5 1640 646 258 26 0 chr1 138322735 138322890 -58872542 - RSINE1 SINE B4 -4 161 3 5 1640 29 0 0 0 chr1 138322895 138322924 -58872508 + AT_rich Low_complexity Low_complexity 1 29 0 5 1640 585 253 25 55 chr1 138322950 138323113 -58872319 - RSINE1 SINE B4 -2 163 6 5 1640 565 235 13 7 chr1 138323119 138323273 -58872159 + HAL1-2a_MD LINE L1 2348 2502 -522 5 1640 30 0 0 0 chr1 138323525 138323555 -58871877 + AT_rich Low_complexity Low_complexity 1 30 0 5 1640 3251 122 19 14 chr1 138323555 138324070 -58871362 - Lx4A LINE L1 0 7058 6541 5 1640 607 225 128 47 chr1 138324640 138324789 -58870643 + RSINE1 SINE B4 2 162 -3 5 1640 23 68 0 0 chr1 138324792 138324836 -58870596 + AT_rich Low_complexity Low_complexity 1 44 0 5 1640 663 185 8 0 chr1 138324894 138325013 -58870419 + B3 SINE B2 20 139 -77 5 1640 274 284 17 68 chr1 138325077 138325194 -58870238 + PB1D10 SINE Alu 6 116 -1 5 1640 519 223 213 25 chr1 138325225 138325464 -58869968 + B4 SINE B4 1 284 -8 5 1640 254 238 34 65 chr1 138325521 138325629 -58869803 + B1F2 SINE Alu 16 117 -32 5 1640 664 262 46 22 chr1 138325630 138325844 -58869588 + B3 SINE B2 1 216 0 5 1640 215 305 0 33 chr1 138325879 138325940 -58869492 + ID4 SINE ID 24 82 -1 5 1640 683 199 279 0 chr1 138327317 138327478 -58867954 + B3 SINE B2 5 210 -6 5 1640 22 0 0 0 chr1 138328043 138328065 -58867367 + AT_rich Low_complexity Low_complexity 1 22 0 5 1640 472 259 15 7 chr1 138328136 138328257 -58867175 + PB1D10 SINE Alu 4 124 -25 5 1640 240 294 88 0 chr1 138328255 138328323 -58867109 + ID4 SINE ID 10 83 0 5 1640 342 226 69 35 chr1 138328387 138328474 -58866958 - PB1D7 SINE Alu -16 104 15 5 1640 344 296 16 50 chr1 138329307 138329428 -58866004 - PB1D9 SINE Alu -3 117 1 5 1640 519 267 14 22 chr1 138329642 138329780 -58865652 + B1F SINE Alu 1 137 -12 5 1640 1260 41 0 0 chr1 138330007 138330153 -58865279 + B1_Mus1 SINE Alu 2 147 -1 5 1640 273 57 0 0 chr1 138330502 138330537 -58864895 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1640 406 176 125 23 chr1 138330918 138331046 -58864386 - B1_Mur1 SINE Alu -7 142 2 5 1640 210 37 0 0 chr1 138331361 138331388 -58864044 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1640 689 211 0 29 chr1 138331389 138331526 -58863906 + B3 SINE B2 77 209 -7 5 1640 801 249 45 0 chr1 138331661 138331862 -58863570 + B3 SINE B2 7 216 0 5 1640 509 214 17 17 chr1 138332683 138332802 -58862630 - PB1D9 SINE Alu 0 120 2 5 1640 320 277 113 98 chr1 138333078 138333243 -58862189 - L1MC LINE L1 -2063 5819 5648 5 1640 359 300 17 0 chr1 138333243 138333363 -58862069 + PB1 SINE Alu 3 124 -3 5 1640 1291 27 0 0 chr1 138333372 138333519 -58861913 + B1_Mus2 SINE Alu 1 147 0 5 1640 320 277 113 98 chr1 138333519 138333547 -58861885 - L1MC LINE L1 -2238 5644 5613 5 1640 214 286 99 14 chr1 138333681 138333752 -58861680 - ID SINE ID -141 83 7 5 1640 238 289 97 23 chr1 138333756 138333869 -58861563 - B1F SINE Alu -3 114 1 6 1640 980 150 0 0 chr1 138333966 138334113 -58861319 - B1_Mus1 SINE Alu -1 147 1 6 1640 1110 264 74 110 chr1 138334115 138334779 -58860653 - L1MB8 LINE L1 -41 6137 5498 6 1640 342 115 0 0 chr1 138334791 138334843 -58860589 + (ACTG)n Simple_repeat Simple_repeat 4 55 0 6 1640 528 289 189 0 chr1 138334851 138335031 -58860401 - ID_B1 SINE B4 -6 218 5 6 1640 431 274 81 21 chr1 138335041 138335320 -58860112 - L1MB8 LINE L1 -710 5474 5174 6 1640 962 136 13 13 chr1 138335521 138335670 -58859762 - B1_Mur3 SINE Alu 0 149 1 6 1640 297 197 0 0 chr1 138336104 138336170 -58859262 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1640 24 0 0 0 chr1 138336703 138336727 -58858705 + AT_rich Low_complexity Low_complexity 1 24 0 6 1640 1200 50 0 0 chr1 138337199 138337338 -58858094 + B1_Mus1 SINE Alu 2 140 -8 6 1640 492 18 0 0 chr1 138337338 138337395 -58858037 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1640 435 248 35 35 chr1 138337739 138337852 -58857580 + PB1D7 SINE Alu 1 113 -7 6 1640 1220 109 16 5 chr1 138338619 138338803 -58856629 - B2_Mm1t SINE B2 -6 187 2 6 1640 260 254 28 153 chr1 138341548 138341692 -58853740 + B1F1 SINE Alu 14 139 -10 6 1640 855 195 47 26 chr1 138342705 138342895 -58852537 + B2_Mm2 SINE B2 2 195 0 6 1640 417 39 0 0 chr1 138342901 138342952 -58852480 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 6 1640 919 42 366 0 chr1 138343295 138343437 -58851995 + B2_Mm2 SINE B2 2 195 0 6 1640 823 242 40 10 chr1 138343954 138343982 -58851450 - B3 SINE B2 -10 206 179 6 1640 216 0 0 0 chr1 138343982 138344006 -58851426 + (TATG)n Simple_repeat Simple_repeat 3 26 0 6 1640 823 242 40 10 chr1 138344006 138344177 -58851255 - B3 SINE B2 -38 178 1 6 1640 594 103 0 0 chr1 138344203 138344290 -58851142 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1640 1640 31 0 15 chr1 138344859 138345054 -58850378 + B2_Mm1a SINE B2 2 193 0 6 1640 1450 70 5 16 chr1 138345098 138345288 -58850144 - B2_Mm2 SINE B2 -7 188 1 6 1640 503 273 81 29 chr1 138345313 138345449 -58849983 - B1F SINE Alu -6 143 1 6 1640 247 208 40 40 chr1 138345490 138345565 -58849867 + PB1 SINE Alu 17 91 -36 6 1640 4188 97 77 34 chr1 138345970 138346620 -58848812 + RLTR33 LTR ERVK 1 678 0 6 1640 868 143 97 7 chr1 138346639 138346794 -58848638 + B2_Mm2 SINE B2 1 169 -26 6 1640 248 291 87 43 chr1 138346819 138346934 -58848498 + MLT1I LTR MaLR 15 134 -277 6 1640 285 323 48 0 chr1 138347262 138347386 -58848046 - MIRb SINE MIR -89 179 50 6 1640 493 283 124 23 chr1 138347389 138347566 -58847866 + B3A SINE B2 2 196 -2 6 1640 867 184 7 0 chr1 138347589 138347736 -58847696 + B1_Mur2 SINE Alu 2 149 0 6 1640 1139 92 85 0 chr1 138347770 138347934 -58847498 + B2_Mm1t SINE B2 2 179 -14 6 1640 331 101 336 27 chr1 138347970 138348083 -58847349 + B2_Mm2 SINE B2 47 194 -1 6 1640 885 125 8 0 chr1 138348227 138348355 -58847077 + B1_Mur3 SINE Alu 18 146 -3 6 1640 1063 114 6 6 chr1 138348377 138348553 -58846879 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 1640 323 341 16 31 chr1 138348553 138348674 -58846758 - RSINE1 SINE B4 -41 124 4 6 1640 330 197 56 0 chr1 138348877 138348948 -58846484 - B1_Mur2 SINE Alu -10 139 65 6 1640 322 140 0 0 chr1 138349283 138349333 -58846099 - HAL1-3A_ME LINE L1 -833 2025 1976 6 1640 776 178 0 6 chr1 138349366 138349547 -58845885 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1640 490 299 55 7 chr1 138349899 138350044 -58845388 - MIR SINE MIR -34 228 77 6 1640 488 229 44 16 chr1 138350235 138350372 -58845060 - B3A SINE B2 -57 141 9 6 1640 294 29 0 0 chr1 138350508 138350543 -58844889 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1640 420 268 50 7 chr1 138351288 138351427 -58844005 - B1F SINE Alu -1 148 4 6 1640 183 167 0 172 chr1 138351976 138352034 -58843398 + MIRm SINE MIR 42 89 -187 6 1640 312 158 0 0 chr1 138352104 138352161 -58843271 + GA-rich Low_complexity Low_complexity 2 58 0 6 1640 357 125 0 0 chr1 138352802 138352858 -58842574 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 6 1640 424 266 83 14 chr1 138353461 138353606 -58841826 + RSINE1 SINE B4 11 165 0 6 1640 207 0 0 0 chr1 138353636 138353659 -58841773 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1640 610 255 14 21 chr1 138353750 138353894 -58841538 + B1_Mur4 SINE Alu 6 148 -2 6 1640 316 264 100 83 chr1 138354169 138354195 -58841237 + B4 SINE B4 66 93 -199 6 1640 417 219 138 37 chr1 138354195 138354304 -58841128 + B1F SINE Alu 1 120 0 6 1640 1194 88 0 0 chr1 138354536 138354695 -58840737 + B2_Mm2 SINE B2 2 160 -35 6 1640 510 17 0 0 chr1 138354697 138354756 -58840676 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 6 1640 423 274 9 19 chr1 138354962 138355070 -58840362 - PB1D7 SINE Alu -13 107 1 6 1640 581 245 43 0 chr1 138355349 138355488 -58839944 + B1F SINE Alu 3 147 -2 6 1640 269 281 0 0 chr1 138355488 138355570 -58839862 + ID4 SINE ID 2 83 0 6 1640 410 238 18 24 chr1 138355770 138355887 -58839545 - B1_Mur3 SINE Alu 0 117 4 6 1640 204 40 0 0 chr1 138356072 138356097 -58839335 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6 1640 728 169 13 90 chr1 138356231 138356387 -58839045 + B1_Mur3 SINE Alu 1 144 -5 6 1640 1293 83 0 0 chr1 138356415 138356595 -58838837 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1640 2365 132 5 14 chr1 138357106 138357476 -58837956 - ORR1B2 LTR MaLR 0 367 1 6 1640 234 333 0 0 chr1 138358432 138358492 -58836940 + B4A SINE B4 85 144 -148 6 1640 365 239 0 0 chr1 138358439 138358506 -58836926 + PB1D10 SINE Alu 7 73 -44 6 1640 42 48 0 0 chr1 138358513 138358576 -58836856 + AT_rich Low_complexity Low_complexity 1 63 0 6 1640 322 161 78 15 chr1 138358577 138358857 -58836575 + (TA)n Simple_repeat Simple_repeat 1 297 0 6 1640 348 230 28 44 chr1 138358768 138358950 -58836482 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 6 1640 286 292 0 0 chr1 138359586 138359651 -58835781 + (CCG)n Simple_repeat Simple_repeat 3 67 0 6 1640 508 305 45 0 chr1 138360178 138360332 -58835100 - MIR SINE MIR -2 260 100 6 1640 481 223 145 8 chr1 138360686 138360817 -58834615 - B1F SINE Alu 0 149 1 6 1640 346 320 39 10 chr1 138361064 138361168 -58834264 - L2b LINE L2 -16 3359 3253 6 1640 1683 27 0 0 chr1 138361598 138361786 -58833646 + B2_Mm1a SINE B2 2 189 -4 6 1640 1293 106 16 5 chr1 138361818 138362007 -58833425 + B2_Mm2 SINE B2 1 191 -4 6 1640 592 209 174 42 chr1 138362010 138362142 -58833290 + B3 SINE B2 2 161 -55 6 1640 378 0 0 0 chr1 138362142 138362184 -58833248 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1640 592 209 174 42 chr1 138362184 138362241 -58833191 + B3 SINE B2 162 215 -1 6 1640 340 284 0 0 chr1 138363824 138363905 -58831527 - PB1D10 SINE Alu -36 81 1 6 1640 180 250 0 22 chr1 138364219 138364264 -58831168 + L2a LINE L2 3377 3420 -6 6 1640 243 264 139 0 chr1 138365850 138365922 -58829510 - ID4_ SINE ID 0 83 2 6 1640 22 70 0 0 chr1 138365956 138365999 -58829433 + AT_rich Low_complexity Low_complexity 1 43 0 6 1640 658 219 16 0 chr1 138366047 138366175 -58829257 + B1_Mur1 SINE Alu 1 130 -19 6 1640 770 148 89 0 chr1 138366487 138366622 -58828810 + B1_Mus2 SINE Alu 1 147 0 6 1640 1183 41 0 27 chr1 138366690 138366840 -58828592 - B1_Mus1 SINE Alu -1 147 2 6 1640 28 0 0 0 chr1 138367544 138367572 -58827860 + AT_rich Low_complexity Low_complexity 1 28 0 6 1640 329 261 23 85 chr1 138368301 138368431 -58827001 - RSINE1 SINE B4 0 165 44 6 1640 228 111 0 0 chr1 138368607 138368643 -58826789 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 6 1640 929 111 7 7 chr1 138368643 138368779 -58826653 - B1_Mur3 SINE Alu -13 136 1 6 1640 1224 177 19 10 chr1 138368781 138368986 -58826446 - B3 SINE B2 -5 211 5 6 1640 754 76 246 0 chr1 138369018 138369136 -58826296 - B1_Mus1 SINE Alu 0 148 2 6 1640 339 85 0 0 chr1 138369184 138369231 -58826201 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1640 435 283 50 18 chr1 138369569 138369585 -58825847 + ID_B1 SINE B4 67 105 -119 6 1640 440 212 59 0 chr1 138369585 138369670 -58825762 + PB1D7 SINE Alu 3 92 -28 6 1640 389 246 0 0 chr1 138369661 138369730 -58825702 + ID4 SINE ID 8 76 -7 6 1640 435 283 50 18 chr1 138369670 138369708 -58825724 + ID_B1 SINE B4 106 206 -18 6 1640 334 259 22 45 chr1 138370222 138370355 -58825077 - PB1D10 SINE Alu -12 137 1 6 1640 271 164 88 35 chr1 138370528 138370585 -58824847 - RMER10B LTR ERVL 0 398 339 6 1640 555 199 27 41 chr1 138370621 138370768 -58824664 - RLTR15 LTR ERVK -214 145 1 6 1640 492 200 64 40 chr1 138370768 138370885 -58824547 - B1_Mur3 SINE Alu -29 120 1 6 1640 749 261 162 29 chr1 138370887 138371238 -58824194 - L1_Rod LINE L1 -305 5542 5145 6 1640 458 311 26 0 chr1 138371515 138371666 -58823766 - RSINE1 SINE B4 -8 157 3 6 1640 800 165 48 41 chr1 138371689 138371834 -58823598 - B1_Mur4 SINE Alu 0 150 5 6 1640 234 91 0 0 chr1 138371853 138371886 -58823546 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1640 1257 27 0 7 chr1 138371886 138372034 -58823398 - B1_Mm SINE Alu 0 147 1 6 1640 784 284 103 32 chr1 138372046 138372333 -58823099 - L1MB5 LINE L1 -99 6075 5767 6 1640 261 267 100 0 chr1 138372382 138372472 -58822960 - L1MB5 LINE L1 -537 5637 5539 6 1640 595 192 287 0 chr1 138372476 138372643 -58822789 - B3 SINE B2 -1 215 1 6 1640 540 248 91 6 chr1 138372651 138372868 -58822564 - L1MB5 LINE L1 -716 5464 5228 6 1640 445 242 46 21 chr1 138373073 138373206 -58822226 - RSINE1 SINE B4 -30 135 2 7 1640 228 233 0 0 chr1 138373223 138373266 -58822166 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1640 423 268 31 75 chr1 138373266 138373427 -58822005 - RSINE1 SINE B4 0 165 12 7 1640 4517 70 3 32 chr1 138373499 138374101 -58821331 - LTRIS_Mus LTR ERV1 -2 585 1 7 1640 857 136 64 0 chr1 138374250 138374390 -58821042 + B1_Mur3 SINE Alu 1 149 0 7 1640 642 247 61 18 chr1 138374592 138374757 -58820675 - B4 SINE B4 0 292 121 7 1640 372 94 0 0 chr1 138375944 138375997 -58819435 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1640 907 153 0 0 chr1 138376004 138376148 -58819284 - B1_Mur4 SINE Alu -5 145 2 7 1640 2238 239 128 60 chr1 138376513 138377403 -58818029 - Lx9 LINE L1 -1 7643 6599 7 1640 441 272 81 0 chr1 138377863 138377999 -58817433 + B4 SINE B4 41 187 -105 7 1640 225 0 0 0 chr1 138378150 138378175 -58817257 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1640 1180 82 0 0 chr1 138378175 138378322 -58817110 - B1_Mus2 SINE Alu 0 147 1 7 1640 905 169 26 26 chr1 138378686 138378875 -58816557 + B2_Mm2 SINE B2 1 189 -6 7 1640 1051 258 54 32 chr1 138379719 138379891 -58815541 - B4A SINE B4 -6 286 105 7 1640 1415 170 61 110 chr1 138379891 138380282 -58815150 - ORR1D1 LTR MaLR 0 374 3 7 1640 1051 258 54 32 chr1 138380282 138380389 -58815043 - B4A SINE B4 -188 104 1 7 1640 335 203 17 0 chr1 138380424 138380483 -58814949 + ID SINE ID 23 82 -142 7 1640 1002 159 0 0 chr1 138380493 138380853 -58814579 + (CA)n Simple_repeat Simple_repeat 1 360 0 7 1640 330 292 97 51 chr1 138380908 138381103 -58814329 + MIR SINE MIR 7 210 -52 7 1640 1178 61 0 0 chr1 138381361 138381508 -58813924 - B1_Mus1 SINE Alu 0 148 2 7 1640 1111 61 0 39 chr1 138381584 138381737 -58813695 - B1_Mus1 SINE Alu 0 148 2 7 1640 419 247 24 24 chr1 138381770 138382107 -58813325 + (TG)n Simple_repeat Simple_repeat 1 337 0 7 1640 2193 209 106 21 chr1 138382114 138382761 -58812671 - Lx5 LINE L1 -1176 5874 5175 7 1640 454 306 7 15 chr1 138383096 138383232 -58812200 - B4A SINE B4 0 292 158 7 1640 662 66 302 0 chr1 138384634 138384740 -58810692 + B1_Mus1 SINE Alu 2 139 -9 7 1640 205 29 59 0 chr1 138384740 138384774 -58810658 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1640 682 262 71 129 chr1 138385555 138385849 -58809583 + B4A SINE B4 1 277 -15 7 1640 332 228 95 17 chr1 138385953 138386069 -58809363 + B1_Mus2 SINE Alu 2 126 -21 7 1640 191 283 35 152 chr1 138386133 138386304 -58809128 - L2 LINE L2 -443 2976 2826 7 1640 247 323 0 0 chr1 138386553 138386615 -58808817 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1640 485 173 40 28 chr1 138387084 138387203 -58808229 - B1_Mur4 SINE Alu 0 150 5 7 1640 228 89 35 35 chr1 138387757 138387815 -58807617 + (CAGG)n Simple_repeat Simple_repeat 2 59 0 7 1640 352 260 24 12 chr1 138388602 138388703 -58806729 - ORR1D1 LTR MaLR -1 373 262 7 1640 278 215 0 122 chr1 138389022 138389096 -58806336 - Lx6 LINE L1 -507 6543 6479 7 1640 3382 165 35 18 chr1 138389107 138390070 -58805362 - Lx6 LINE L1 -701 6349 5317 7 1640 529 220 75 5 chr1 138390146 138390287 -58805145 + B1F SINE Alu 3 146 -3 7 1640 25 0 0 0 chr1 138391058 138391083 -58804349 + AT_rich Low_complexity Low_complexity 1 25 0 7 1640 196 267 66 55 chr1 138391498 138391589 -58803843 + MIRb SINE MIR 24 115 -153 7 1640 189 277 64 172 chr1 138391818 138391975 -58803457 + MIR SINE MIR 112 251 -11 7 1640 1194 99 66 0 chr1 138392074 138392256 -58803176 + B2_Mm2 SINE B2 2 195 0 7 1640 598 261 140 26 chr1 138393363 138393556 -58801876 + ID_B1 SINE B4 10 224 0 7 1640 383 238 0 0 chr1 138394567 138394647 -58800785 - B3 SINE B2 -136 80 1 7 1640 199 243 0 0 chr1 138394671 138394708 -58800724 + MER5A DNA MER1_type 44 80 -109 7 1640 272 353 15 0 chr1 138394716 138394784 -58800648 - B1_Mur1 SINE Alu -41 108 40 7 1640 388 287 33 13 chr1 138395186 138395338 -58800094 + RSINE1 SINE B4 5 159 -6 7 1640 1244 119 17 0 chr1 138395437 138395613 -58799819 + B2_Mm2 SINE B2 2 180 -15 7 1640 1006 79 50 0 chr1 138395641 138395780 -58799652 + B1_Mm SINE Alu 2 147 0 7 1640 21 36 0 0 chr1 138395780 138395808 -58799624 + AT_rich Low_complexity Low_complexity 1 28 0 7 1640 779 256 51 51 chr1 138395970 138396246 -58799186 - B4A SINE B4 -16 276 1 7 1640 477 240 38 51 chr1 138396276 138396408 -58799024 - RSINE1 SINE B4 -14 151 19 7 1640 346 278 0 0 chr1 138396801 138396873 -58798559 + ID4_ SINE ID 3 74 -9 7 1640 231 271 0 79 chr1 138397001 138397077 -58798355 + MLT1A LTR MaLR 3 72 -302 7 1640 644 235 77 18 chr1 138397077 138397298 -58798134 - L1M3 LINE L1 -1516 4624 4391 7 1640 813 139 35 0 chr1 138397311 138397484 -58797948 + GA-rich Low_complexity Low_complexity 2 180 0 7 1640 230 242 48 0 chr1 138397500 138397562 -58797870 - ID4_ SINE ID -17 66 2 7 1640 352 211 179 42 chr1 138397635 138397803 -58797629 - L1M3 LINE L1 -1888 4252 4062 7 1640 1171 48 14 0 chr1 138397833 138397978 -58797454 - B1_Mm SINE Alu 0 147 1 7 1640 432 0 0 0 chr1 138398242 138398290 -58797142 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1640 622 279 21 0 chr1 138398466 138398606 -58796826 + RSINE1 SINE B4 2 144 -21 7 1640 37 69 0 0 chr1 138398633 138398705 -58796727 + AT_rich Low_complexity Low_complexity 1 72 0 7 1640 1142 178 44 15 chr1 138398930 138399135 -58796297 - B3 SINE B2 -5 211 1 7 1640 233 320 0 0 chr1 138399531 138399606 -58795826 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 7 1640 787 225 10 40 chr1 138399631 138399830 -58795602 - B3 SINE B2 -7 209 17 7 1640 871 181 6 53 chr1 138400057 138400226 -58795206 - B3 SINE B2 -14 202 42 7 1640 517 328 8 0 chr1 138400241 138400369 -58795063 + ID_B1 SINE B4 82 210 -14 7 1640 372 226 41 65 chr1 138400937 138401060 -58794372 - PB1D9 SINE Alu 0 120 1 7 1640 207 0 0 0 chr1 138401159 138401182 -58794250 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1640 810 264 140 4 chr1 138401200 138401443 -58793989 - B4A SINE B4 -12 280 5 7 1640 451 295 0 0 chr1 138401467 138401562 -58793870 - ID_B1 SINE B4 0 224 130 7 1640 728 207 42 63 chr1 138401714 138401905 -58793527 + B3A SINE B2 1 187 -11 7 1640 318 172 17 0 chr1 138401907 138401965 -58793467 - PB1D10 SINE Alu -8 109 51 7 1640 1516 62 5 5 chr1 138401997 138402190 -58793242 - B2_Mm2 SINE B2 -1 194 2 7 1640 357 286 188 0 chr1 138402577 138402689 -58792743 + ID_B1 SINE B4 92 224 0 7 1640 909 147 7 7 chr1 138402717 138402861 -58792571 + B1_Mur4 SINE Alu 1 144 -6 7 1640 252 252 164 70 chr1 138403117 138403245 -58792187 - RSINE1 SINE B4 -25 140 1 7 1640 25 51 0 0 chr1 138403302 138403341 -58792091 + AT_rich Low_complexity Low_complexity 1 39 0 7 1640 675 252 98 53 chr1 138403512 138403784 -58791648 - L1MA4 LINE L1 -370 5930 5644 7 1640 303 93 0 0 chr1 138404385 138404428 -58791004 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1640 362 217 67 54 chr1 138404438 138404566 -58790866 + PB1D10 SINE Alu 1 120 0 7 1640 610 173 119 8 chr1 138404725 138404859 -58790573 + B1_Mur1 SINE Alu 1 149 0 7 1640 246 174 0 0 chr1 138404859 138404905 -58790527 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1640 643 211 16 0 chr1 138405135 138405263 -58790169 - B3A SINE B2 -68 130 1 7 1640 526 227 194 17 chr1 138405656 138405893 -58789539 - B4 SINE B4 -12 280 2 7 1640 789 161 95 0 chr1 138406137 138406274 -58789158 + B1_Mur4 SINE Alu 1 150 0 7 1640 1779 162 31 18 chr1 138406288 138406615 -58788817 - Lx5 LINE L1 -81 6969 6639 7 1640 392 0 0 20 chr1 138406880 138406929 -58788503 + (TATAA)n Simple_repeat Simple_repeat 2 49 0 7 1640 183 156 0 0 chr1 138407122 138407154 -58788278 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1640 229 315 13 27 chr1 138408051 138408126 -58787306 + ID4 SINE ID 8 81 -2 7 1640 453 19 0 0 chr1 138408450 138408504 -58786928 + (CATA)n Simple_repeat Simple_repeat 3 56 0 7 1640 979 108 0 0 chr1 138408686 138408815 -58786617 + B1_Mur3 SINE Alu 2 130 -19 7 1640 255 125 0 0 chr1 138408817 138408857 -58786575 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 7 1640 341 168 131 0 chr1 138410146 138410229 -58785203 - PB1D7 SINE Alu -1 126 27 7 1640 188 307 43 54 chr1 138410415 138410508 -58784924 + MIR SINE MIR 59 150 -58 7 1640 242 217 0 62 chr1 138410508 138410572 -58784860 + 4.5SRNA scRNA scRNA 27 86 -8 7 1640 712 130 0 9 chr1 138410521 138410630 -58784802 + B1_Mur3 SINE Alu 42 149 0 7 1640 204 125 0 0 chr1 138410632 138410664 -58784768 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1640 390 129 0 0 chr1 138410867 138410929 -58784503 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 7 1640 212 311 16 0 chr1 138410951 138411012 -58784420 - ID4_ SINE ID -6 77 16 7 1640 1172 108 0 18 chr1 138411222 138411392 -58784040 + B2_Mm2 SINE B2 1 167 -28 7 1640 256 238 93 53 chr1 138411430 138411581 -58783851 + L1ME3 LINE L1 6005 6161 -1 7 1640 675 226 154 11 chr1 138411594 138411782 -58783650 + B3 SINE B2 2 216 0 7 1641 306 160 9 0 chr1 138412084 138412151 -58783281 + B1_Mur4 SINE Alu 41 110 -10 7 1641 300 348 85 42 chr1 138413168 138413357 -58782075 - MIRb SINE MIR -21 247 51 7 1641 331 374 99 0 chr1 138413761 138413932 -58781500 - MLT1J LTR MaLR -324 188 1 7 1641 1245 54 0 0 chr1 138414025 138414172 -58781260 - B1_Mus2 SINE Alu 0 147 1 8 1641 266 254 146 51 chr1 138414293 138414430 -58781002 - RSINE1 SINE B4 -14 151 2 8 1641 243 0 0 0 chr1 138415008 138415035 -58780397 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1641 300 338 79 0 chr1 138415108 138415247 -58780185 + MIRb SINE MIR 80 229 -39 8 1641 996 262 0 5 chr1 138415855 138416066 -58779366 - B3 SINE B2 -5 211 2 8 1641 467 229 210 6 chr1 138416525 138416701 -58778731 + ID_B1 SINE B4 3 214 -10 8 1641 506 229 134 22 chr1 138416764 138416898 -58778534 + B1_Mur3 SINE Alu 1 149 0 8 1641 313 264 103 0 chr1 138416920 138417007 -58778425 + PB1D10 SINE Alu 14 109 -8 8 1641 384 315 23 0 chr1 138417359 138417489 -58777943 + RSINE1 SINE B4 4 136 -29 8 1641 256 172 11 11 chr1 138417492 138417529 -58777903 + polypyrimidine Low_complexity Low_complexity 53 89 0 8 1641 641 13 0 13 chr1 138417529 138417608 -58777824 + (TTCTC)n Simple_repeat Simple_repeat 4 81 0 8 1641 256 172 11 11 chr1 138417608 138417658 -58777774 + CT-rich Low_complexity Low_complexity 2 52 0 8 1641 360 0 0 0 chr1 138417662 138417702 -58777730 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1641 522 212 15 73 chr1 138418336 138418486 -58776946 - RMER4B LTR ERVK -146 439 343 8 1641 806 174 30 47 chr1 138418505 138418674 -58776758 - B2_Mm2 SINE B2 -29 166 1 8 1641 701 235 84 21 chr1 138418726 138418917 -58776515 + B3 SINE B2 2 204 -12 8 1641 27 0 0 0 chr1 138418920 138418947 -58776485 + AT_rich Low_complexity Low_complexity 1 27 0 8 1641 569 144 56 9 chr1 138419399 138419724 -58775708 + (CA)n Simple_repeat Simple_repeat 1 340 0 8 1641 489 222 199 34 chr1 138419919 138420154 -58775278 - B4 SINE B4 0 292 6 8 1641 472 299 9 86 chr1 138420205 138420425 -58775007 + B3 SINE B2 1 203 -13 8 1641 269 270 176 38 chr1 138421473 138421604 -58773828 - B1F2 SINE Alu 0 149 1 8 1641 22 0 0 0 chr1 138422011 138422033 -58773399 + AT_rich Low_complexity Low_complexity 1 22 0 8 1641 286 220 219 48 chr1 138422034 138422139 -58773293 - RSINE1 SINE B4 0 165 43 8 1641 279 79 0 0 chr1 138423123 138423161 -58772271 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1641 183 80 0 0 chr1 138423165 138423190 -58772242 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 8 1641 857 25 187 32 chr1 138423192 138423315 -58772117 - B1_Mus1 SINE Alu -6 142 1 8 1641 754 124 0 15 chr1 138424520 138424634 -58770798 - Lx2 LINE L1 0 6997 6884 8 1641 189 0 0 0 chr1 138424634 138424655 -58770777 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 8 1641 754 124 0 15 chr1 138424655 138424671 -58770761 - Lx2 LINE L1 -114 6883 6869 8 1641 228 143 0 0 chr1 138425901 138425936 -58769496 + MurSatRep1 Unknown Unknown 230 264 -1873 8 1641 601 126 21 0 chr1 138426712 138426807 -58768625 + PB1D9 SINE Alu 18 114 -6 8 1641 864 235 104 96 chr1 138426998 138427374 -58768058 + MTE2a LTR MaLR 1 379 0 8 1641 621 90 99 10 chr1 138428467 138428568 -58766864 - B2_Mm2 SINE B2 -6 189 80 8 1641 437 256 24 16 chr1 138428566 138428689 -58766743 + Tigger7 DNA MER2_type 2289 2412 -79 8 1641 262 138 35 0 chr1 138428689 138428747 -58766685 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 1641 968 157 120 28 chr1 138428903 138429119 -58766313 - ORR1C1 LTR MaLR 0 378 143 8 1641 692 158 94 0 chr1 138429123 138429250 -58766182 - B1_Mus2 SINE Alu 0 147 9 8 1641 942 166 0 0 chr1 138429257 138429414 -58766018 - ORR1C1 LTR MaLR -221 157 1 8 1641 200 339 0 0 chr1 138429414 138429470 -58765962 - MIR SINE MIR -103 159 104 8 1641 2131 47 0 0 chr1 138429473 138429726 -58765706 + L1_Mus1 LINE L1 6315 6567 0 8 1641 1201 91 74 0 chr1 138429748 138429924 -58765508 + B2_Mm1t SINE B2 1 189 -4 8 1641 425 287 37 74 chr1 138430024 138430186 -58765246 - MER5B DNA MER1_type -16 162 7 8 1641 21 0 0 0 chr1 138430245 138430266 -58765166 + AT_rich Low_complexity Low_complexity 1 21 0 8 1641 770 263 11 6 chr1 138430361 138430537 -58764895 + B3 SINE B2 36 212 -4 8 1641 432 0 0 0 chr1 138430777 138430825 -58764607 + (TATG)n Simple_repeat Simple_repeat 1 48 0 8 1641 665 234 155 69 chr1 138430825 138431160 -58764272 + RLTR9A LTR ERVK 5 368 0 8 1641 240 192 19 0 chr1 138431209 138431261 -58764171 - L1M2 LINE L1 -637 5663 5611 8 1641 477 212 29 29 chr1 138431401 138431503 -58763929 - PB1D7 SINE Alu 0 120 19 8 1641 250 259 0 0 chr1 138431460 138431514 -58763918 - B4A SINE B4 -146 146 93 8 1641 200 360 54 24 chr1 138431544 138431749 -58763683 + L2a LINE L2 2954 3164 -262 8 1641 306 285 96 62 chr1 138431749 138431895 -58763537 + MLT1A LTR MaLR 1 151 -223 8 1641 1681 173 138 102 chr1 138431903 138432315 -58763117 + MT2A LTR ERVL 24 450 -83 8 1641 2027 123 57 9 chr1 138432315 138432650 -58762782 + RLTR15 LTR ERVK 1 351 -8 8 1641 1248 55 0 0 chr1 138432661 138432807 -58762625 + B1_Mus1 SINE Alu 3 148 0 8 1641 236 120 20 0 chr1 138432807 138432857 -58762575 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 8 1641 555 176 29 19 chr1 138433363 138433467 -58761965 - MTC LTR MaLR 0 421 317 8 1641 942 125 79 0 chr1 138433460 138433612 -58761820 - MTC LTR MaLR -257 164 1 8 1641 1019 204 11 16 chr1 138433653 138433837 -58761595 - B3 SINE B2 -25 191 9 8 1641 252 321 0 23 chr1 138433760 138433846 -58761586 - RSINE1 SINE B4 -79 86 3 8 1641 1506 40 0 6 chr1 138434574 138434752 -58760680 - B2_Mm2 SINE B2 -18 177 1 8 1641 2459 89 0 47 chr1 138435287 138435340 -58760092 - ORR1A2 LTR MaLR 0 327 289 8 1641 1515 47 21 0 chr1 138435340 138435530 -58759902 - B2_Mm2 SINE B2 -1 194 1 8 1641 2459 89 0 47 chr1 138435530 138435819 -58759613 - ORR1A2 LTR MaLR -39 288 1 8 1641 1142 50 0 0 chr1 138436186 138436327 -58759105 + B1_Mus2 SINE Alu 7 147 0 8 1641 224 59 0 29 chr1 138436335 138436370 -58759062 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1641 201 74 0 0 chr1 138436489 138436516 -58758916 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1641 243 0 0 0 chr1 138438239 138438266 -58757166 + (CAG)n Simple_repeat Simple_repeat 1 27 0 8 1641 234 216 59 0 chr1 138438445 138438496 -58756936 + MIR SINE MIR 46 99 -109 8 1641 1214 147 16 0 chr1 138439051 138439242 -58756190 + B2_Mm2 SINE B2 1 194 -1 8 1641 238 337 0 11 chr1 138439295 138439385 -58756047 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1641 286 232 83 24 chr1 138439476 138439560 -58755872 + B1F SINE Alu 46 134 -15 8 1641 298 101 101 0 chr1 138439568 138439647 -58755785 + CT-rich Low_complexity Low_complexity 3 89 0 8 1641 339 44 0 0 chr1 138440013 138440058 -58755374 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1641 250 270 10 119 chr1 138440264 138440365 -58755067 + AmnSINE1 SINE SINE 433 522 -53 8 1641 253 47 23 23 chr1 138440371 138440415 -58755017 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 8 1641 186 71 0 0 chr1 138440506 138440534 -58754898 + (CCCCCA)n Simple_repeat Simple_repeat 5 32 0 8 1641 615 246 162 0 chr1 138440814 138440993 -58754439 + ID_B1 SINE B4 4 211 -13 8 1641 459 0 0 0 chr1 138440995 138441046 -58754386 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1641 663 13 0 0 chr1 138441486 138441562 -58753870 + (GGGAGA)n Simple_repeat Simple_repeat 1 76 0 8 1641 559 211 17 9 chr1 138442179 138442294 -58753138 + PB1D10 SINE Alu 2 117 0 8 1641 594 276 25 147 chr1 138442298 138442536 -58752896 + B4A SINE B4 1 209 -83 8 1641 986 125 7 0 chr1 138442560 138442704 -58752728 + B1_Mus1 SINE Alu 3 147 -1 8 1641 501 175 48 6 chr1 138442799 138442966 -58752466 + (CA)n Simple_repeat Simple_repeat 1 174 0 8 1641 297 299 17 86 chr1 138443180 138443258 -58752174 + B3A SINE B2 87 163 -35 8 1641 2373 112 101 0 chr1 138443258 138443616 -58751816 - ORR1B1 LTR MaLR 0 394 1 8 1641 297 299 17 86 chr1 138443616 138443654 -58751778 + B3A SINE B2 164 194 -4 8 1641 455 233 100 0 chr1 138443774 138443894 -58751538 + MTD LTR MaLR 17 148 -271 8 1641 528 163 0 0 chr1 138443924 138444053 -58751379 + (CA)n Simple_repeat Simple_repeat 2 130 0 8 1641 498 246 52 3 chr1 138444206 138444342 -58751090 - ID_B1 SINE B4 -9 215 80 8 1641 192 77 0 0 chr1 138444768 138444794 -58750638 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 8 1641 312 282 68 8 chr1 138444794 138444926 -58750506 - B1F SINE Alu -9 140 1 8 1641 215 114 23 0 chr1 138445069 138445113 -58750319 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1641 295 265 0 14 chr1 138445135 138445204 -58750228 - RSINE1 SINE B4 -94 71 4 8 1641 360 167 13 40 chr1 138445412 138445487 -58749945 - ID_B1 SINE B4 -24 200 128 8 1641 1955 97 6 8 chr1 138446018 138446293 -58749139 - L1Md_F2 LINE L1 -268 6314 6072 8 1641 1634 61 8 34 chr1 138446293 138446530 -58748902 + L1Md_F2 LINE L1 6341 6571 -11 8 1641 547 279 7 33 chr1 138446654 138446806 -58748626 + RSINE1 SINE B4 3 150 -15 8 1641 296 351 62 16 chr1 138446962 138447156 -58748276 - MLT1J2 LTR MaLR -2 446 244 8 1641 253 202 272 0 chr1 138447186 138447300 -58748132 - RCHARR1 DNA MER1_type -29 945 801 8 1641 414 0 0 0 chr1 138448041 138448087 -58747345 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1641 206 307 39 19 chr1 138448239 138448342 -58747090 - MIRb SINE MIR -114 154 50 8 1641 185 0 40 0 chr1 138448530 138448555 -58746877 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1641 620 108 39 10 chr1 138448607 138448710 -58746722 - B1_Mm SINE Alu 0 147 42 8 1641 706 321 0 0 chr1 138448711 138448870 -58746562 + C-rich Low_complexity Low_complexity 5 163 0 8 1641 205 171 0 0 chr1 138450180 138450215 -58745217 + (CACG)n Simple_repeat Simple_repeat 1 35 0 8 1641 408 88 0 0 chr1 138450985 138451042 -58744390 + (TATG)n Simple_repeat Simple_repeat 2 58 0 8 1641 936 150 69 0 chr1 138451042 138451215 -58744217 - B2_Mm2 SINE B2 -9 186 2 9 1641 820 193 0 20 chr1 138451297 138451450 -58743982 - B1_Mur4 SINE Alu 0 150 1 9 1641 358 184 226 28 chr1 138451607 138451713 -58743719 - RSINE1 SINE B4 -36 129 3 9 1641 618 224 27 27 chr1 138451746 138451893 -58743539 + B1_Mur1 SINE Alu 3 149 0 9 1641 1193 61 0 0 chr1 138451896 138452044 -58743388 + B1_Mus1 SINE Alu 1 148 0 9 1641 407 336 48 17 chr1 138452047 138452277 -58743155 + MER58B DNA MER1_type 101 337 -4 9 1641 396 0 0 0 chr1 138453175 138453219 -58742213 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 1641 315 0 0 0 chr1 138453220 138453255 -58742177 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1641 1130 105 70 27 chr1 138453293 138453479 -58741953 + B2_Mm2 SINE B2 1 194 -1 9 1641 1613 36 5 0 chr1 138453887 138454079 -58741353 + B2_Mm1t SINE B2 1 193 0 9 1641 271 211 25 50 chr1 138454142 138454222 -58741210 + B4A SINE B4 127 204 -88 9 1641 578 278 35 6 chr1 138454257 138454427 -58741005 + B3A SINE B2 3 177 -21 9 1641 189 0 0 0 chr1 138454466 138454487 -58740945 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1641 651 91 35 35 chr1 138454567 138454681 -58740751 - BC1_Mm scRNA scRNA -37 115 2 9 1641 1603 37 11 0 chr1 138455083 138455271 -58740161 + B2_Mm1a SINE B2 2 191 -2 9 1641 26 0 0 0 chr1 138455271 138455297 -58740135 + AT_rich Low_complexity Low_complexity 1 26 0 9 1641 345 24 0 0 chr1 138455401 138455443 -58739989 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1641 24 0 0 0 chr1 138455604 138455628 -58739804 + AT_rich Low_complexity Low_complexity 1 24 0 9 1641 1570 32 32 0 chr1 138456811 138456997 -58738435 - B2_Mm1a SINE B2 0 193 2 9 1641 419 197 483 21 chr1 138457004 138457149 -58738283 - B3 SINE B2 -4 212 1 9 1641 261 0 0 0 chr1 138457167 138457196 -58738236 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 1641 207 0 0 0 chr1 138457196 138457218 -58738214 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1641 606 277 76 73 chr1 138457220 138457508 -58737924 - B4 SINE B4 -2 290 2 9 1641 1323 51 0 0 chr1 138457532 138457769 -58737663 + (TG)n Simple_repeat Simple_repeat 1 237 0 9 1641 325 236 44 22 chr1 138457974 138458065 -58737367 - PB1D7 SINE Alu 0 120 28 9 1641 1151 68 7 0 chr1 138458132 138458278 -58737154 + B1_Mus1 SINE Alu 2 148 0 9 1641 743 204 0 0 chr1 138458296 138458433 -58736999 - B1_Mur2 SINE Alu -12 137 1 9 1641 441 0 0 0 chr1 138458887 138458936 -58736496 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1641 930 201 54 25 chr1 138460395 138460599 -58734833 - B3 SINE B2 0 216 7 9 1641 335 265 0 93 chr1 138461240 138461369 -58734063 + PB1D10 SINE Alu 1 117 0 9 1641 21 36 0 0 chr1 138461385 138461413 -58734019 + AT_rich Low_complexity Low_complexity 1 28 0 9 1641 449 287 9 0 chr1 138461973 138462088 -58733344 + B3A SINE B2 82 197 -1 9 1641 377 133 67 0 chr1 138462728 138462803 -58732629 + ID_B1 SINE B4 142 221 -3 9 1641 217 143 68 51 chr1 138462750 138462809 -58732623 + PB1D9 SINE Alu 61 120 0 9 1641 2088 102 176 0 chr1 138463131 138463466 -58731966 + ORR1B1 LTR MaLR 1 394 0 9 1641 836 120 7 22 chr1 138463587 138463723 -58731709 + B1_Mus1 SINE Alu 10 143 -5 9 1641 700 258 62 3 chr1 138463757 138464050 -58731382 + MTE2b LTR MaLR 1 373 -6 9 1641 1164 111 139 20 chr1 138464171 138464373 -58731059 + URR1A DNA MER1_type 1 226 0 9 1641 859 225 114 14 chr1 138464410 138464690 -58730742 - L1MB7 LINE L1 -289 5895 5588 9 1641 559 248 52 32 chr1 138464726 138464880 -58730552 - RSINE1 SINE B4 -4 161 5 9 1641 371 73 18 0 chr1 138464880 138464935 -58730497 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1641 233 286 0 0 chr1 138464951 138465007 -58730425 + (TATG)n Simple_repeat Simple_repeat 3 58 0 9 1641 265 237 86 0 chr1 138466149 138466242 -58729190 + PB1D9 SINE Alu 17 120 0 9 1641 205 132 53 0 chr1 138466443 138466481 -58728951 + C-rich Low_complexity Low_complexity 3 42 0 9 1641 1234 34 0 0 chr1 138467958 138468104 -58727328 + B1_Mus2 SINE Alu 2 147 0 9 1641 189 0 0 0 chr1 138468104 138468125 -58727307 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1641 311 22 0 61 chr1 138468720 138468769 -58726663 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 9 1641 1076 41 88 0 chr1 138468769 138468916 -58726516 - B2_Mm1t SINE B2 -33 160 1 9 1641 867 0 49 0 chr1 138469098 138469221 -58726211 + (CA)n Simple_repeat Simple_repeat 1 129 0 9 1641 1452 68 10 20 chr1 138469623 138469818 -58725614 - B2_Mm1t SINE B2 0 193 1 9 1641 288 20 0 58 chr1 138469849 138469901 -58725531 + (TTG)n Simple_repeat Simple_repeat 2 50 0 9 1641 744 217 0 34 chr1 138469901 138470038 -58725394 - B1_Mur3 SINE Alu -10 139 6 9 1641 342 0 0 0 chr1 138470075 138470113 -58725319 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1641 404 203 0 0 chr1 138470128 138470202 -58725230 - RSINE1 SINE B4 -76 89 16 9 1641 1169 62 0 14 chr1 138470762 138470910 -58724522 - B1_Mm SINE Alu -1 146 1 9 1641 216 0 0 0 chr1 138470910 138470934 -58724498 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1641 331 222 14 0 chr1 138470990 138471062 -58724370 - PB1D10 SINE Alu -2 115 43 9 1641 982 134 0 7 chr1 138471165 138471315 -58724117 - B1_Mur4 SINE Alu 0 150 2 9 1641 25 0 0 0 chr1 138471352 138471377 -58724055 + AT_rich Low_complexity Low_complexity 1 25 0 9 1641 228 67 0 0 chr1 138471435 138471465 -58723967 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 9 1641 2881 102 97 31 chr1 138471466 138471974 -58723458 - RMER2 LTR ERV1 -26 541 1 9 1641 514 267 134 28 chr1 138471974 138472228 -58723204 - B4A SINE B4 -11 281 1 9 1641 914 94 0 14 chr1 138472365 138472505 -58722927 - B2_Mm2 SINE B2 -25 170 33 9 1641 369 0 0 0 chr1 138472508 138472549 -58722883 + (TC)n Simple_repeat Simple_repeat 1 41 0 9 1641 1169 71 6 12 chr1 138472576 138472746 -58722686 + B2_Mm1a SINE B2 2 170 -23 9 1641 1241 54 0 0 chr1 138472748 138472895 -58722537 + B1_Mm SINE Alu 1 147 0 9 1641 261 0 0 0 chr1 138473789 138473818 -58721614 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 1641 252 0 0 0 chr1 138473818 138473845 -58721587 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1641 756 150 0 29 chr1 138475274 138475411 -58720021 + B1_Mur3 SINE Alu 17 149 0 9 1641 351 0 0 0 chr1 138475419 138475458 -58719974 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1641 225 0 0 0 chr1 138475458 138475482 -58719950 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1641 1251 113 38 0 chr1 138475548 138475734 -58719698 + B2_Mm2 SINE B2 2 194 -1 9 1641 4495 16 0 0 chr1 138476352 138476845 -58718587 + MT2_Mm LTR ERVL 1 493 0 9 1641 296 231 32 42 chr1 138477449 138477544 -58717888 + B4A SINE B4 186 279 -13 9 1641 180 0 0 0 chr1 138477559 138477579 -58717853 + (CACAC)n Simple_repeat Simple_repeat 5 24 0 9 1641 213 211 0 0 chr1 138477579 138477631 -58717801 + GA-rich Low_complexity Low_complexity 1 52 0 9 1641 207 167 42 0 chr1 138477633 138477681 -58717751 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 9 1641 755 265 64 10 chr1 138477902 138478104 -58717328 + B3 SINE B2 3 215 -1 9 1641 1673 36 0 0 chr1 138478301 138478494 -58716938 - B2_Mm1a SINE B2 0 193 1 9 1641 234 128 0 0 chr1 138478735 138478774 -58716658 + (CATA)n Simple_repeat Simple_repeat 4 42 0 9 1641 1171 112 32 16 chr1 138478946 138479136 -58716296 - B2_Mm2 SINE B2 -2 193 1 9 1641 254 200 0 18 chr1 138479268 138479324 -58716108 + CT-rich Low_complexity Low_complexity 1 55 0 9 1641 443 209 0 0 chr1 138479324 138479410 -58716022 - PB1D10 SINE Alu -13 104 19 9 1641 249 33 0 0 chr1 138479545 138479575 -58715857 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 9 1641 21 57 0 0 chr1 138480026 138480061 -58715371 + AT_rich Low_complexity Low_complexity 1 35 0 9 1641 263 273 0 33 chr1 138481186 138481277 -58714155 + (CA)n Simple_repeat Simple_repeat 2 89 0 9 1641 1418 51 51 0 chr1 138481456 138481634 -58713798 + B2_Mm1t SINE B2 1 187 -6 9 1641 719 180 91 26 chr1 138481735 138481889 -58713543 - RSINE1 SINE B4 0 165 2 9 1641 227 224 353 39 chr1 138481967 138482069 -58713363 + RSINE1 SINE B4 16 149 -16 9 1641 1262 41 0 0 chr1 138482090 138482237 -58713195 + B1_Mus2 SINE Alu 1 147 0 9 1641 240 213 0 21 chr1 138482264 138482312 -58713120 + B1F2 SINE Alu 1 47 -102 9 1641 1325 163 0 18 chr1 138482363 138482582 -58712850 - B3 SINE B2 0 216 2 9 1641 339 119 0 33 chr1 138482751 138482812 -58712620 + B1_Mus2 SINE Alu 71 129 -18 9 1641 365 109 0 15 chr1 138482818 138482883 -58712549 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 9 1641 897 211 63 0 chr1 138482889 138483079 -58712353 + B3 SINE B2 8 209 -7 9 1641 238 192 135 0 chr1 138483097 138483149 -58712283 + B4A SINE B4 228 286 -6 9 1641 234 0 0 0 chr1 138483158 138483184 -58712248 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 9 1641 358 183 23 148 chr1 138483247 138483375 -58712057 + MT2B LTR ERVL 153 264 -337 9 1641 776 153 34 34 chr1 138483263 138483412 -58712020 + B1_Mur3 SINE Alu 1 149 0 9 1641 224 358 50 44 chr1 138483453 138483507 -58711925 - B3A SINE B2 -16 182 1 9 1641 646 228 0 0 chr1 138483507 138483634 -58711798 - RSINE1 SINE B4 -37 128 2 1 1641 326 312 12 0 chr1 138483932 138484012 -58711420 - PB1D10 SINE Alu -8 109 29 1 1641 22 0 0 0 chr1 138485197 138485219 -58710213 + AT_rich Low_complexity Low_complexity 1 22 0 1 1641 182 305 0 33 chr1 138485701 138485762 -58709670 + L2c LINE L2 3238 3296 -91 1 1641 22 56 0 0 chr1 138486443 138486479 -58708953 + AT_rich Low_complexity Low_complexity 1 36 0 1 1641 1052 127 193 0 chr1 138488038 138488219 -58707213 - B3 SINE B2 0 216 1 1 1641 375 316 26 9 chr1 138488418 138488533 -58706899 + MIRc SINE MIR 90 206 -62 1 1641 368 229 202 0 chr1 138488895 138489004 -58706428 - ID_B1 SINE B4 -10 214 84 1 1641 336 309 35 35 chr1 138489036 138489177 -58706255 + B1F SINE Alu 1 141 -8 1 1641 501 187 11 0 chr1 138489298 138489389 -58706043 + B1_Mus2 SINE Alu 10 101 -46 1 1641 276 98 0 0 chr1 138489384 138489425 -58706007 - ORR1D1 LTR MaLR -284 90 50 1 1641 1788 131 54 3 chr1 138489427 138489741 -58705691 + ORR1B1 LTR MaLR 3 332 -62 1 1641 451 48 19 200 chr1 138489895 138489938 -58705494 + ORR1B1 LTR MaLR 309 351 -43 1 1641 1471 53 21 0 chr1 138489938 138490127 -58705305 + B2_Mm1t SINE B2 1 193 0 1 1641 451 48 19 200 chr1 138490127 138490188 -58705244 + ORR1B1 LTR MaLR 352 394 0 1 1641 321 200 0 15 chr1 138490188 138490242 -58705190 - ORR1D1 LTR MaLR -321 53 1 1 1641 638 217 41 20 chr1 138490248 138490394 -58705038 - B4A SINE B4 -38 254 106 1 1641 186 43 0 0 chr1 138490468 138490491 -58704941 + (TCTG)n Simple_repeat Simple_repeat 3 25 0 1 1641 203 203 0 17 chr1 138490491 138490551 -58704881 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1641 405 314 16 74 chr1 138490578 138490767 -58704665 - B4A SINE B4 -107 185 8 1 1641 348 250 23 0 chr1 138490772 138490860 -58704572 - B4A SINE B4 -195 97 8 1 1641 236 316 26 13 chr1 138490918 138490995 -58704437 - ID4_ SINE ID -2 81 4 1 1641 234 288 72 56 chr1 138491678 138491803 -58703629 - MLT1A1 LTR MaLR -12 396 270 1 1641 1744 92 51 7 chr1 138492282 138492556 -58702876 - ORR1A3 LTR MaLR -8 318 33 1 1641 231 219 325 0 chr1 138493038 138493161 -58702271 - L2a LINE L2 0 3426 3264 1 1641 567 260 116 7 chr1 138493281 138493436 -58701996 - ID_B1 SINE B4 -7 217 46 1 1641 1731 127 33 91 chr1 138493493 138493810 -58701622 + ORR1A3 LTR MaLR 1 332 -42 1 1641 1281 97 27 0 chr1 138493810 138493995 -58701437 + B2_Mm1t SINE B2 1 190 -3 1 1641 1731 116 24 91 chr1 138493995 138494050 -58701382 + ORR1A3 LTR MaLR 279 318 -8 1 1641 209 135 19 0 chr1 138494072 138494124 -58701308 + T-rich Low_complexity Low_complexity 1 53 0 1 1641 933 128 0 51 chr1 138494125 138494282 -58701150 - B1_Mur4 SINE Alu -1 149 1 1 1641 432 215 337 0 chr1 138494297 138494460 -58700972 - ID_B1 SINE B4 -2 222 5 1 1641 223 109 73 0 chr1 138494537 138494592 -58700840 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1641 247 129 145 0 chr1 138494592 138494654 -58700778 + L1M LINE L1 5298 5368 -923 1 1641 481 157 11 11 chr1 138494657 138494747 -58700685 + B3 SINE B2 2 91 -125 1 1641 747 217 36 0 chr1 138494751 138494917 -58700515 - B3 SINE B2 -34 182 11 1 1641 1426 54 16 36 chr1 138495871 138496063 -58699369 - B2_Mm2 SINE B2 -7 188 1 1 1641 324 0 0 0 chr1 138496308 138496344 -58699088 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 1641 1130 88 0 0 chr1 138496344 138496503 -58698929 - B2_Mm1a SINE B2 -33 160 2 1 1641 261 321 0 0 chr1 138496636 138496717 -58698715 + ID_B1 SINE B4 114 194 -30 1 1641 252 326 42 10 chr1 138496717 138496732 -58698700 + B1F SINE Alu 33 131 -18 1 1641 917 30 83 0 chr1 138498288 138498420 -58697012 + B1_Mus1 SINE Alu 6 148 0 1 1641 242 119 57 43 chr1 138498559 138498620 -58696812 + T-rich Low_complexity Low_complexity 9 72 0 1 1641 901 162 0 7 chr1 138498620 138498769 -58696663 - B1_Mur2 SINE Alu 0 149 2 1 1641 271 212 106 0 chr1 138499360 138499426 -58696006 + B4A SINE B4 68 140 -152 1 1641 299 130 0 0 chr1 138499381 138499427 -58696005 + PB1D9 SINE Alu 11 56 -64 1 1641 302 248 27 54 chr1 138499427 138499538 -58695894 + L1M4 LINE L1 5651 5758 -420 1 1641 446 282 287 23 chr1 138499630 138499929 -58695503 - MTEa LTR MaLR -1 378 1 1 1641 419 322 171 4 chr1 138500202 138500436 -58694996 - L4 LINE RTE -536 1493 1221 1 1641 561 190 253 12 chr1 138500639 138500809 -58694623 + B3 SINE B2 1 211 -5 2 1641 1003 194 33 28 chr1 138500867 138501079 -58694353 - B3 SINE B2 -3 213 1 3 1641 264 218 11 170 chr1 138501127 138501221 -58694211 + RSINE1 SINE B4 49 127 -38 4 1641 847 80 33 0 chr1 138501258 138501409 -58694023 + (CATA)n Simple_repeat Simple_repeat 4 159 0 5 1641 750 182 214 11 chr1 138501414 138501592 -58693840 - B3 SINE B2 -2 214 1 6 1641 204 253 0 0 chr1 138502663 138502718 -58692714 - L2b LINE L2 -12 3375 3321 7 1641 213 170 75 0 chr1 138502760 138502813 -58692619 + A-rich Low_complexity Low_complexity 3 59 0 8 1641 180 0 0 0 chr1 138502862 138502882 -58692550 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 9 1641 347 313 20 0 chr1 138502935 138503034 -58692398 - B4A SINE B4 -101 191 91 1 1641 180 77 0 0 chr1 138503299 138503325 -58692107 + (TTAGGG)n Simple_repeat Simple_repeat 5 30 0 1 1641 931 222 5 51 chr1 138503623 138503837 -58691595 - B3 SINE B2 -8 208 5 1 1641 288 0 0 0 chr1 138504017 138504049 -58691383 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 1 1641 311 250 0 0 chr1 138504242 138504306 -58691126 + RSINE1 SINE B4 100 163 -2 1 1641 1160 75 0 0 chr1 138504359 138504506 -58690926 - B1_Mus1 SINE Alu 0 148 2 1 1641 722 174 355 0 chr1 138504563 138504718 -58690714 - B3 SINE B2 -6 210 1 1 1641 918 224 15 30 chr1 138505089 138505291 -58690141 - B3 SINE B2 -17 199 1 1 1641 216 200 0 0 chr1 138505983 138506038 -58689394 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1641 182 338 35 57 chr1 138506318 138506459 -58688973 - L3 LINE CR1 -490 3999 3862 1 1641 289 219 15 45 chr1 138506507 138506574 -58688858 + PB1D9 SINE Alu 2 66 -54 2 1641 254 98 0 19 chr1 138506590 138506642 -58688790 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1641 718 149 30 0 chr1 138506694 138506828 -58688604 + B1_Mus2 SINE Alu 9 146 -1 2 1641 1194 155 35 212 chr1 138506850 138506888 -58688544 + RLTR42-int LTR ERVK 3197 3232 -2290 2 1641 1386 75 32 0 chr1 138506888 138507074 -58688358 + B2_Mm1t SINE B2 2 193 0 2 1641 1194 155 35 212 chr1 138507074 138507156 -58688276 + RLTR42-int LTR ERVK 3233 3293 -2229 2 1641 1266 119 17 0 chr1 138507156 138507333 -58688099 + B2_Mm2 SINE B2 2 181 -14 2 1641 1194 155 35 212 chr1 138507333 138507348 -58688084 + RLTR42-int LTR ERVK 3294 3294 -2228 2 1641 1252 34 0 0 chr1 138507348 138507494 -58687938 + B1_Mm SINE Alu 2 147 0 2 1641 1194 155 35 212 chr1 138507494 138507847 -58687585 + RLTR42-int LTR ERVK 3294 3600 -1922 2 1641 2703 149 45 66 chr1 138507914 138508216 -58687216 + RLTR42-int LTR ERVK 3593 3884 -1638 2 1641 1249 41 0 0 chr1 138508216 138508363 -58687069 - B1_Mm SINE Alu 0 147 1 2 1641 2703 149 45 66 chr1 138508363 138508622 -58686810 + RLTR42-int LTR ERVK 3885 4142 -1380 2 1641 226 306 55 18 chr1 138508719 138508829 -58686603 + HAL1 LINE L1 1261 1374 -1133 2 1641 401 291 27 0 chr1 138509014 138509124 -58686308 + HAL1 LINE L1 1603 1715 -792 2 1641 487 294 0 94 chr1 138509368 138509548 -58685884 + RSINE1 SINE B4 2 164 -1 2 1641 235 178 112 0 chr1 138510400 138510453 -58684979 + PB1D9 SINE Alu 1 58 -91 3 1641 390 316 0 17 chr1 138510498 138510617 -58684815 + B3A SINE B2 1 117 -81 3 1641 1118 89 0 0 chr1 138510787 138510945 -58684487 + B2_Mm2 SINE B2 1 158 -37 3 1641 180 0 0 0 chr1 138510946 138510966 -58684466 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1641 530 184 43 9 chr1 138511507 138511622 -58683810 + B3A SINE B2 7 125 -73 3 1641 396 0 0 0 chr1 138511628 138511672 -58683760 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1641 221 307 11 22 chr1 138512222 138512312 -58683120 + L2c LINE L2 3280 3368 -19 3 1641 255 361 9 97 chr1 138512424 138512651 -58682781 - MIR SINE MIR -45 217 11 3 1641 1494 177 142 17 chr1 138512662 138513013 -58682419 - MTC LTR MaLR -19 402 8 3 1641 1257 73 83 6 chr1 138513018 138513198 -58682234 + B2_Mm2 SINE B2 2 195 0 3 1641 827 122 56 21 chr1 138513204 138513346 -58682086 + B1_Mur4 SINE Alu 3 149 -1 4 1641 222 62 0 0 chr1 138514155 138514187 -58681245 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1641 469 310 42 98 chr1 138514212 138514519 -58680913 - B4A SINE B4 0 292 3 4 1641 223 255 21 0 chr1 138514545 138514592 -58680840 + ID4_ SINE ID 26 73 -10 4 1641 228 275 32 21 chr1 138514778 138514871 -58680561 - L1_Mur3 LINE L1 -128 5752 5659 4 1641 441 241 35 18 chr1 138515030 138515144 -58680288 + PB1D10 SINE Alu 2 117 0 4 1641 290 253 0 78 chr1 138515590 138515680 -58679752 + PB1D10 SINE Alu 24 106 -11 4 1641 283 262 60 120 chr1 138515803 138515920 -58679512 - PB1D10 SINE Alu -7 110 1 4 1641 529 327 47 0 chr1 138515963 138516177 -58679255 - ID_B1 SINE B4 0 224 1 4 1641 243 0 0 0 chr1 138517555 138517582 -58677850 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4 1641 225 232 54 0 chr1 138517584 138517640 -58677792 - B1_Mur4 SINE Alu -90 60 2 5 1641 274 340 9 44 chr1 138517922 138518036 -58677396 + RSINE1 SINE B4 2 111 -54 5 1641 338 336 27 20 chr1 138518187 138518333 -58677099 - B1_Mur1 SINE Alu -1 148 2 5 1641 914 144 26 53 chr1 138518359 138518549 -58676883 + B2_Mm2 SINE B2 3 187 -8 5 1641 189 0 0 0 chr1 138518653 138518674 -58676758 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1641 891 204 35 10 chr1 138518740 138518938 -58676494 + B3 SINE B2 8 210 -6 5 1641 447 191 282 0 chr1 138518954 138519064 -58676368 + B1_Mur4 SINE Alu 1 141 -9 5 1641 297 242 172 0 chr1 138519109 138519208 -58676224 + PB1D9 SINE Alu 3 118 -2 5 1641 448 207 400 0 chr1 138519237 138519387 -58676045 - B3 SINE B2 -6 210 1 5 1641 180 77 0 0 chr1 138521597 138521623 -58673809 + (CGG)n Simple_repeat Simple_repeat 2 27 0 5 1641 254 209 8 57 chr1 138521640 138521762 -58673670 + (CGGGG)n Simple_repeat Simple_repeat 2 117 0 6 1641 264 229 0 0 chr1 138521887 138521970 -58673462 + (CGG)n Simple_repeat Simple_repeat 3 85 0 6 1641 204 40 0 0 chr1 138522278 138522303 -58673129 + (CCA)n Simple_repeat Simple_repeat 3 27 0 6 1641 339 171 0 0 chr1 138524829 138524905 -58670527 + A-rich Low_complexity Low_complexity 1 76 0 6 1641 482 241 88 22 chr1 138527117 138527253 -58668179 + B1_Mur3 SINE Alu 1 145 -4 6 1641 468 275 113 31 chr1 138527680 138527875 -58667557 + ID_B1 SINE B4 14 224 0 6 1641 1214 34 0 20 chr1 138529894 138530043 -58665389 - B1_Mus2 SINE Alu -1 146 1 6 1641 791 211 14 7 chr1 138530118 138530266 -58665166 + B1_Mur2 SINE Alu 1 149 0 6 1641 343 272 58 0 chr1 138530663 138530766 -58664666 + PB1D7 SINE Alu 1 109 -11 6 1641 1091 83 14 0 chr1 138531178 138531322 -58664110 + B1_Mm SINE Alu 2 147 0 6 1641 1741 16 0 0 chr1 138531448 138531640 -58663792 + B2_Mm1a SINE B2 2 193 0 7 1641 542 226 38 0 chr1 138531732 138531838 -58663594 + PB1D10 SINE Alu 1 110 -7 7 1641 282 133 44 0 chr1 138532720 138532765 -58662667 - B1_Mur2 SINE Alu -50 99 53 7 1641 435 83 0 0 chr1 138532772 138532832 -58662600 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1641 1120 67 0 0 chr1 138532943 138533078 -58662354 + B1_Mus1 SINE Alu 2 136 -12 7 1641 213 39 0 0 chr1 138533078 138533104 -58662328 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 1641 313 286 0 45 chr1 138533121 138533209 -58662223 + PB1D10 SINE Alu 34 117 0 7 1641 642 256 170 28 chr1 138533439 138533692 -58661740 + B4A SINE B4 3 291 -1 7 1641 187 0 21 85 chr1 138533777 138533824 -58661608 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 7 1641 603 160 124 31 chr1 138533824 138533953 -58661479 - B1_Mur2 SINE Alu -6 143 3 7 1641 817 236 22 11 chr1 138534039 138534219 -58661213 - B3A SINE B2 -16 182 1 8 1641 397 265 25 62 chr1 138534962 138535123 -58660309 - RSINE1 SINE B4 -7 158 4 8 1641 225 0 0 0 chr1 138535131 138535156 -58660276 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1641 1300 34 0 0 chr1 138535244 138535392 -58660040 + B1_Mus1 SINE Alu 1 148 0 8 1641 243 309 62 0 chr1 138535728 138535825 -58659607 + PB1D7 SINE Alu 18 120 0 8 1641 485 212 20 0 chr1 138536042 138536141 -58659291 + B1_Mur2 SINE Alu 37 137 -12 8 1641 408 266 201 0 chr1 138536278 138536417 -58659015 + ID_B1 SINE B4 1 167 -57 8 1641 570 75 32 0 chr1 138536436 138536529 -58658903 + (TC)n Simple_repeat Simple_repeat 1 96 0 8 1641 388 302 44 44 chr1 138536699 138536834 -58658598 - B1F SINE Alu -11 138 4 8 1641 1941 119 20 75 chr1 138536852 138536903 -58658529 - ORR1A2 LTR MaLR 0 327 287 8 1641 940 88 73 0 chr1 138536903 138537040 -58658392 - B1_Mus1 SINE Alu 0 148 2 9 1641 1941 119 20 75 chr1 138537040 138537334 -58658098 - ORR1A2 LTR MaLR -41 286 1 8 1641 11054 141 41 9 chr1 138537334 138539236 -58656196 - ORR1A2-int LTR MaLR 0 1963 1 8 1641 2078 104 6 0 chr1 138539240 138539557 -58655875 - ORR1A2 LTR MaLR -8 319 1 8 1641 1141 68 0 27 chr1 138539747 138539897 -58655535 - B1_Mus2 SINE Alu 0 147 2 9 1641 362 284 0 19 chr1 138539935 138540039 -58655393 + PB1D10 SINE Alu 10 111 -6 9 1641 718 103 16 57 chr1 138540046 138540170 -58655262 + PB1D9 SINE Alu 2 120 0 9 1641 351 0 0 0 chr1 138540385 138540424 -58655008 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1641 536 257 15 7 chr1 138540517 138540654 -58654778 + B1_Mur1 SINE Alu 5 142 -7 9 1641 210 37 0 0 chr1 138540655 138540682 -58654750 + (CAA)n Simple_repeat Simple_repeat 2 28 0 9 1641 324 0 0 0 chr1 138540684 138540720 -58654712 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 9 1641 518 228 79 0 chr1 138541666 138541793 -58653639 - B1F2 SINE Alu -7 142 6 9 1641 369 109 0 0 chr1 138542215 138542270 -58653162 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1641 236 330 27 36 chr1 138542358 138542468 -58652964 - PB1D10 SINE Alu 0 117 9 1 1641 659 192 0 0 chr1 138542719 138542839 -58652593 - B1_Mus1 SINE Alu -23 125 6 1 1641 408 262 201 30 chr1 138542928 138543097 -58652335 - ID_B1 SINE B4 -25 199 2 1 1642 350 326 30 15 chr1 138543343 138543477 -58651955 + B1F1 SINE Alu 11 146 -3 1 1642 369 183 15 154 chr1 138543507 138543643 -58651789 + PB1D10 SINE Alu 1 117 0 1 1642 989 269 8 20 chr1 138543767 138544014 -58651418 - B4A SINE B4 0 292 49 1 1642 405 98 0 0 chr1 138544049 138544103 -58651329 + (T)n Simple_repeat Simple_repeat 1 54 0 1 1642 1031 92 35 0 chr1 138544103 138544245 -58651187 - B1_Mus2 SINE Alu 0 147 1 1 1642 405 98 0 0 chr1 138544245 138544251 -58651181 + (T)n Simple_repeat Simple_repeat 1 6 0 1 1642 756 121 9 0 chr1 138544254 138544370 -58651062 - B1_Mur4 SINE Alu -6 144 28 1 1642 207 0 0 0 chr1 138544423 138544446 -58650986 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1642 1248 48 0 0 chr1 138544446 138544593 -58650839 - B1_Mus2 SINE Alu 0 147 1 1 1642 423 180 0 22 chr1 138544830 138544921 -58650511 + B1_Mur1 SINE Alu 59 147 -2 1 1642 4252 32 0 16 chr1 138545241 138545787 -58649645 - L1Md_A LINE L1 0 6582 6080 1 1642 370 189 18 0 chr1 138545809 138545920 -58649512 + CT-rich Low_complexity Low_complexity 2 114 0 1 1642 218 171 0 0 chr1 138545969 138546004 -58649428 - B1F1 SINE Alu -44 105 71 1 1642 1059 65 50 0 chr1 138546040 138546179 -58649253 - B1_Mm SINE Alu 0 147 2 1 1642 1534 37 5 16 chr1 138546189 138546379 -58649053 - B2_Mm1a SINE B2 -5 188 1 1 1642 213 65 0 0 chr1 138546438 138546469 -58648963 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1642 1296 14 0 0 chr1 138546476 138546623 -58648809 - B1_Mm SINE Alu 0 147 1 1 1642 332 274 76 17 chr1 138546655 138546774 -58648658 + B1F1 SINE Alu 19 144 -5 1 1642 1153 55 7 0 chr1 138547275 138547421 -58648011 + B1_Mus2 SINE Alu 1 147 0 1 1642 1192 131 11 0 chr1 138547440 138547616 -58647816 - B2_Mm1t SINE B2 -14 179 2 1 1642 21 0 0 0 chr1 138547658 138547679 -58647753 + AT_rich Low_complexity Low_complexity 1 21 0 1 1642 710 149 40 54 chr1 138547754 138547903 -58647529 - B1_Mus2 SINE Alu 0 147 1 1 1642 1195 62 0 0 chr1 138548222 138548367 -58647065 - B1_Mm SINE Alu -2 145 1 1 1642 408 258 111 22 chr1 138548463 138548598 -58646834 - B1F1 SINE Alu -2 147 1 1 1642 212 189 0 0 chr1 138549398 138549435 -58645997 + T-rich Low_complexity Low_complexity 1 37 0 1 1642 284 308 97 32 chr1 138549435 138549459 -58645973 - B1F SINE Alu 0 149 126 1 1642 532 130 50 0 chr1 138549459 138549559 -58645873 + L1_Mus4 LINE L1 6532 6636 0 1 1642 284 308 97 32 chr1 138549559 138549658 -58645774 - B1F SINE Alu -24 125 18 1 1642 215 150 25 0 chr1 138549686 138549726 -58645706 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1642 252 271 83 30 chr1 138549731 138549743 -58645689 + ID_B1 SINE B4 80 121 -103 1 1642 356 237 62 0 chr1 138549743 138549840 -58645592 + B1F SINE Alu 11 113 -36 1 1642 252 271 83 30 chr1 138549840 138549864 -58645568 + ID_B1 SINE B4 122 219 -5 1 1642 1001 110 14 0 chr1 138549870 138550015 -58645417 + B1_Mus1 SINE Alu 1 147 -1 1 1642 198 0 0 0 chr1 138550778 138550800 -58644632 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1 1642 24 0 0 0 chr1 138551556 138551580 -58643852 + AT_rich Low_complexity Low_complexity 1 24 0 1 1642 460 0 33 0 chr1 138551947 138552007 -58643425 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1642 410 157 12 0 chr1 138552495 138552578 -58642854 + CT-rich Low_complexity Low_complexity 2 85 0 1 1642 245 229 193 0 chr1 138552581 138552664 -58642768 - PB1D10 SINE Alu -5 112 14 1 1642 1203 54 0 0 chr1 138552719 138552866 -58642566 - B1_Mus1 SINE Alu 0 148 2 1 1642 247 308 65 11 chr1 138553024 138553116 -58642316 - L1M5 LINE L1 -299 5825 5729 1 1642 228 86 0 0 chr1 138553722 138553757 -58641675 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1642 3007 45 11 5 chr1 138554310 138554686 -58640746 + L1Md_F2 LINE L1 6190 6567 -15 1 1642 1190 41 0 7 chr1 138554767 138554913 -58640519 - B1_Mm SINE Alu -1 146 2 1 1642 269 318 48 64 chr1 138555529 138555717 -58639715 - L2a LINE L2 -307 3119 2935 1 1642 552 225 22 205 chr1 138556027 138556295 -58639137 + ID_B1 SINE B4 2 220 -4 1 1642 269 333 187 18 chr1 138556414 138556698 -58638734 - L2a LINE L2 -506 2913 2582 1 1642 180 0 0 0 chr1 138557063 138557083 -58638349 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1642 2310 166 12 19 chr1 138557382 138557794 -58637638 + MTC LTR MaLR 1 409 -12 1 1642 218 207 0 17 chr1 138559239 138559298 -58636134 + CT-rich Low_complexity Low_complexity 3 60 0 1 1642 337 342 60 13 chr1 138559298 138559449 -58635983 - HAL1-3A_ME LINE L1 -417 2441 2284 1 1642 956 161 0 11 chr1 138559484 138559666 -58635766 + CT-rich Low_complexity Low_complexity 1 180 0 1 1642 829 267 35 5 chr1 138559700 138559903 -58635529 + ID_B1 SINE B4 7 215 -9 1 1642 661 232 98 75 chr1 138559936 138560150 -58635282 + ID_B1 SINE B4 6 224 0 1 1642 507 169 20 69 chr1 138560245 138560347 -58635085 - B1_Mur3 SINE Alu 0 149 53 1 1642 276 270 0 0 chr1 138560376 138560439 -58634993 - PB1D7 SINE Alu -9 111 49 1 1642 613 299 5 8 chr1 138560646 138560790 -58634642 - ID_B1 SINE B4 -4 220 83 1 1642 21 0 0 0 chr1 138560797 138560818 -58634614 + AT_rich Low_complexity Low_complexity 1 21 0 1 1642 1568 47 0 30 chr1 138560835 138561034 -58634398 + B2_Mm1a SINE B2 1 193 0 1 1642 462 229 35 25 chr1 138561094 138561228 -58634204 - B1_Mur1 SINE Alu 0 149 14 1 1642 226 211 38 19 chr1 138562284 138562337 -58633095 + MLT2B5 LTR ERVL 264 317 -284 1 1642 354 266 0 60 chr1 138562478 138562570 -58632862 + PB1D10 SINE Alu 24 111 -6 1 1642 1090 189 48 10 chr1 138562570 138562778 -58632654 + B3 SINE B2 1 216 0 1 1642 883 8 192 32 chr1 138562833 138562958 -58632474 + B1_Mus1 SINE Alu 2 146 -2 1 1642 771 213 95 5 chr1 138562991 138563180 -58632252 + B3 SINE B2 4 209 -7 1 1642 571 226 81 0 chr1 138563217 138563341 -58632091 + B1_Mur2 SINE Alu 1 134 -15 1 1642 2089 181 7 67 chr1 138563341 138563550 -58631882 + MTC LTR MaLR 4 202 -219 1 1642 752 116 100 8 chr1 138563550 138563680 -58631752 + B1_Mus1 SINE Alu 1 142 -6 1 1642 546 57 0 0 chr1 138563683 138563753 -58631679 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 1 1642 2089 181 7 67 chr1 138563753 138563984 -58631448 + MTC LTR MaLR 203 421 0 1 1642 261 98 0 0 chr1 138564004 138564045 -58631387 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1 1642 495 0 0 0 chr1 138564109 138564164 -58631268 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1642 207 0 0 0 chr1 138564214 138564237 -58631195 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1642 1148 69 14 0 chr1 138564239 138564384 -58631048 - B1_Mm SINE Alu 0 147 1 1 1642 495 0 0 0 chr1 138564406 138564461 -58630971 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1642 226 50 24 24 chr1 138564461 138564501 -58630931 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1642 325 342 8 75 chr1 138564508 138564628 -58630804 - RSINE1 SINE B4 -42 123 12 1 1642 294 50 0 0 chr1 138564788 138564828 -58630604 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1642 815 183 21 0 chr1 138564831 138564973 -58630459 - B1_Mus2 SINE Alu -1 146 2 1 1642 264 208 0 0 chr1 138565177 138565225 -58630207 - ID4 SINE ID -33 50 3 1 1642 306 277 135 96 chr1 138565333 138565437 -58629995 + PB1D10 SINE Alu 1 108 -19 1 1642 1178 88 0 0 chr1 138565567 138565714 -58629718 + B1_Mus1 SINE Alu 1 147 -1 1 1642 423 247 47 4 chr1 138565793 138565912 -58629520 - PB1D10 SINE Alu -27 120 1 1 1642 511 193 58 40 chr1 138566179 138566314 -58629118 - B1_Mur3 SINE Alu -1 148 1 1 1642 408 285 124 91 chr1 138566685 138567159 -58628273 - L2a LINE L2 -1 3425 2936 1 1642 221 276 69 0 chr1 138567666 138567724 -58627708 - ID2 SINE ID -20 63 2 1 1642 353 301 90 45 chr1 138568077 138568300 -58627132 + MIR SINE MIR 19 251 -11 1 1642 25 31 0 0 chr1 138569639 138569671 -58625761 + AT_rich Low_complexity Low_complexity 1 32 0 1 1642 834 249 17 0 chr1 138569671 138569852 -58625580 - ID_B1 SINE B4 -3 221 38 1 1642 233 272 27 80 chr1 138569955 138570067 -58625365 + MIRb SINE MIR 115 220 -48 1 1642 264 30 0 0 chr1 138570283 138570316 -58625116 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 1 1642 435 260 91 8 chr1 138570392 138570524 -58624908 - B1_Mur1 SINE Alu -5 144 2 1 1642 21 0 0 0 chr1 138570538 138570559 -58624873 + AT_rich Low_complexity Low_complexity 1 21 0 1 1642 594 234 80 0 chr1 138570566 138570703 -58624729 + B1_Mur1 SINE Alu 1 148 -1 1 1642 899 137 29 0 chr1 138570748 138570887 -58624545 + B1_Mur4 SINE Alu 1 143 -7 1 1642 257 255 20 0 chr1 138570949 138571000 -58624432 - RSINE1 SINE B4 -29 136 85 1 1642 236 212 152 0 chr1 138571164 138571230 -58624202 - MER5A DNA MER1_type -18 171 96 1 1642 225 297 161 15 chr1 138571173 138571303 -58624129 + MER5B DNA MER1_type 30 178 0 1 1642 234 0 0 0 chr1 138571658 138571684 -58623748 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1642 350 196 191 109 chr1 138572011 138572097 -58623335 + B3 SINE B2 3 84 -132 1 1642 348 24 0 0 chr1 138572097 138572138 -58623294 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1642 350 196 191 109 chr1 138572138 138572234 -58623198 + B3 SINE B2 85 200 -16 1 1642 545 190 25 25 chr1 138572591 138572710 -58622722 + PB1D9 SINE Alu 2 120 0 1 1642 198 0 0 0 chr1 138573340 138573362 -58622070 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2 1642 534 290 30 0 chr1 138573505 138573636 -58621796 + RSINE1 SINE B4 1 135 -30 2 1642 785 216 52 61 chr1 138574248 138574460 -58620972 + B3 SINE B2 1 210 -6 2 1642 708 173 127 6 chr1 138574491 138574648 -58620784 - URR1B DNA MER1_type -49 176 1 2 1642 294 311 64 41 chr1 138574495 138574666 -58620766 + CYRA11_Mm Unknown Y-chromosome 230 404 -213 2 1642 299 258 64 53 chr1 138574796 138574890 -58620542 + B1F SINE Alu 3 97 -52 2 1642 877 109 14 55 chr1 138574903 138575048 -58620384 - B1_Mus2 SINE Alu 0 147 9 2 1642 452 241 12 99 chr1 138574905 138575066 -58620366 - ID_B1 SINE B4 0 224 78 2 1642 980 197 71 41 chr1 138575065 138575261 -58620171 - B3 SINE B2 -6 210 9 2 1642 384 280 82 27 chr1 138575572 138575719 -58619713 - L2 LINE L2 -1077 2342 2188 2 1642 1005 76 56 0 chr1 138575812 138575956 -58619476 + B2_Mm2 SINE B2 2 153 -42 2 1642 597 28 0 0 chr1 138575956 138576027 -58619405 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2 1642 1277 27 0 0 chr1 138576301 138576448 -58618984 + B1_Mus2 SINE Alu 1 147 0 2 1642 237 65 0 0 chr1 138576516 138576547 -58618885 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1642 627 158 0 0 chr1 138576676 138576771 -58618661 + B1_Mur1 SINE Alu 53 147 -2 2 1642 437 255 29 92 chr1 138577305 138577478 -58617954 + RSINE1 SINE B4 4 165 0 2 1642 420 219 24 0 chr1 138577525 138577607 -58617825 + PB1D9 SINE Alu 35 118 -2 2 1642 432 0 0 0 chr1 138577661 138577709 -58617723 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2 1642 270 0 0 0 chr1 138577942 138577972 -58617460 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 1642 914 184 72 38 chr1 138578021 138578230 -58617202 - B3 SINE B2 0 216 1 2 1642 505 258 125 0 chr1 138578231 138578359 -58617073 - B1F SINE Alu -3 146 3 2 1642 22 0 0 0 chr1 138578359 138578381 -58617051 + AT_rich Low_complexity Low_complexity 1 22 0 2 1642 390 342 57 36 chr1 138578609 138578902 -58616530 - B4 SINE B4 0 292 6 2 1642 306 107 0 0 chr1 138578903 138578959 -58616473 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2 1642 681 239 64 52 chr1 138578970 138579078 -58616354 - ID_B1 SINE B4 -60 232 120 2 1642 1888 126 12 67 chr1 138579078 138579419 -58616013 + RLTRETN_Mm LTR ERVK 1 322 0 2 1642 681 240 64 52 chr1 138579419 138579510 -58615922 - ID_B1 SINE B4 -167 125 31 2 1642 22 0 0 0 chr1 138579886 138579908 -58615524 + AT_rich Low_complexity Low_complexity 1 22 0 2 1642 315 0 0 0 chr1 138580607 138580642 -58614790 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1642 678 292 68 4 chr1 138580919 138581156 -58614276 + MER2 DNA MER2_type 94 345 0 2 1642 1225 48 0 7 chr1 138581473 138581620 -58613812 + B1_Mus2 SINE Alu 1 146 -1 2 1642 503 286 103 0 chr1 138582296 138582422 -58613010 - B1_Mur1 SINE Alu -5 144 6 2 1642 452 246 156 40 chr1 138582426 138582577 -58612855 - ID_B1 SINE B4 -2 222 50 2 1642 477 0 0 0 chr1 138582577 138582630 -58612802 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1642 452 246 156 40 chr1 138582630 138582677 -58612755 - ID SINE ID -175 49 1 2 1642 237 24 71 0 chr1 138582688 138582730 -58612702 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1642 186 103 0 0 chr1 138583272 138583301 -58612131 + (CAGGC)n Simple_repeat Simple_repeat 1 29 0 2 1642 1250 98 0 72 chr1 138583525 138583734 -58611698 + B2_Mm2 SINE B2 2 195 0 2 1642 747 222 18 122 chr1 138583900 138583940 -58611492 + B3A SINE B2 1 40 -158 2 1642 1242 54 0 0 chr1 138583940 138584088 -58611344 + B1_Mus1 SINE Alu 1 148 0 2 1642 747 222 18 122 chr1 138584088 138584268 -58611164 + B3A SINE B2 41 198 0 2 1642 222 37 0 0 chr1 138584323 138584350 -58611082 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1642 525 71 0 0 chr1 138584863 138584933 -58610499 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 2 1642 712 193 55 9 chr1 138584933 138585105 -58610327 - B3 SINE B2 -19 176 2 2 1642 359 182 136 0 chr1 138585141 138585207 -58610225 + PB1D10 SINE Alu 33 107 -10 2 1642 206 163 139 0 chr1 138585296 138585339 -58610093 - MIR SINE MIR -106 156 108 2 1642 754 229 7 7 chr1 138585594 138585735 -58609697 - B1_Mur1 SINE Alu -6 143 3 2 1642 1644 36 5 0 chr1 138586021 138586213 -58609219 + B2_Mm1t SINE B2 1 193 0 2 1642 1497 68 0 10 chr1 138586267 138586461 -58608971 - B2_Mm2 SINE B2 -2 193 2 2 1642 254 258 11 0 chr1 138586558 138586647 -58608785 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1642 726 191 163 33 chr1 138586672 138586856 -58608576 - B3 SINE B2 -7 209 2 2 1642 833 288 63 60 chr1 138586857 138587156 -58608276 + MTE2a LTR MaLR 80 379 0 2 1642 428 299 101 7 chr1 138587184 138587332 -58608100 + RSINE1 SINE B4 2 163 -2 2 1642 21 0 0 0 chr1 138587351 138587372 -58608060 + AT_rich Low_complexity Low_complexity 1 21 0 2 1642 510 168 47 63 chr1 138587551 138587678 -58607754 - B1_Mur1 SINE Alu -1 148 24 2 1642 230 299 23 107 chr1 138587592 138587723 -58607709 - MT2B LTR ERVL -338 263 144 2 1642 216 0 0 0 chr1 138588184 138588208 -58607224 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1642 789 188 0 14 chr1 138588210 138588350 -58607082 - B1_Mus1 SINE Alu -6 142 5 2 1642 315 279 0 37 chr1 138588756 138588838 -58606594 - ID4 SINE ID -4 79 1 2 1642 511 241 120 49 chr1 138588892 138589075 -58606357 - B3A SINE B2 0 198 3 2 1642 314 279 70 113 chr1 138589370 138589456 -58605976 + ID_B1 SINE B4 5 169 -55 2 1642 458 277 0 0 chr1 138589456 138589550 -58605882 + B1F1 SINE Alu 3 96 -53 2 1642 419 179 0 21 chr1 138589559 138589605 -58605827 + polypurine Low_complexity Low_complexity 3 47 0 2 1642 692 174 64 14 chr1 138589605 138589745 -58605687 + B1_Mur1 SINE Alu 3 149 0 2 1642 419 179 0 21 chr1 138589745 138589795 -58605637 + polypurine Low_complexity Low_complexity 48 97 0 2 1642 259 308 37 46 chr1 138590157 138590266 -58605166 + L2a LINE L2 3304 3411 -15 2 1642 295 288 25 12 chr1 138590314 138590395 -58605037 + Cheshire DNA MER1_type 10 91 -2329 2 1642 390 301 0 0 chr1 138590393 138590476 -58604956 - PB1D7 SINE Alu 0 120 38 2 1642 201 154 0 0 chr1 138590503 138590542 -58604890 + T-rich Low_complexity Low_complexity 1 39 0 2 1642 1145 68 0 20 chr1 138590544 138590694 -58604738 - B1_Mm SINE Alu 0 147 1 2 1642 512 126 8 67 chr1 138590734 138590853 -58604579 + Lx3A LINE L1 6854 6965 -16 2 1642 405 0 0 0 chr1 138590853 138590898 -58604534 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2 1642 1593 42 5 5 chr1 138590910 138591101 -58604331 - B2_Mm1t SINE B2 -2 191 1 2 1642 234 193 0 0 chr1 138591180 138591237 -58604195 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1642 292 254 28 0 chr1 138591238 138591309 -58604123 + Cheshire DNA MER1_type 172 244 -2176 2 1642 189 194 0 0 chr1 138591450 138591481 -58603951 - L2b LINE L2 -1 3374 3344 2 1642 225 0 0 0 chr1 138591919 138591944 -58603488 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1642 1013 71 57 0 chr1 138591944 138592084 -58603348 - B1_Mus1 SINE Alu 0 148 1 2 1642 357 239 114 50 chr1 138592087 138592267 -58603165 - MIRb SINE MIR -67 195 31 2 1642 219 69 0 0 chr1 138593301 138593330 -58602102 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1642 258 261 69 0 chr1 138593656 138593786 -58601646 + ORR1B1-int LTR MaLR 616 754 -755 2 1642 567 230 40 80 chr1 138593670 138593691 -58601741 + B4 SINE B4 77 220 -71 2 1642 1097 16 0 0 chr1 138593691 138593820 -58601612 + B1_Mm SINE Alu 13 141 -6 2 1642 207 0 0 0 chr1 138593822 138593845 -58601587 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1642 605 98 108 11 chr1 138593950 138594043 -58601389 + U6 snRNA snRNA 1 102 -5 2 1642 204 40 0 0 chr1 138594047 138594072 -58601360 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1642 180 125 0 0 chr1 138594170 138594202 -58601230 + (G)n Simple_repeat Simple_repeat 1 32 0 2 1642 956 156 100 40 chr1 138594455 138594655 -58600777 - B3 SINE B2 -3 213 2 2 1642 593 200 64 36 chr1 138594676 138594816 -58600616 - B1_Mur2 SINE Alu 0 149 6 2 1642 537 193 288 24 chr1 138594841 138595011 -58600421 - B3 SINE B2 0 216 2 2 1642 519 257 0 0 chr1 138595263 138595368 -58600064 - PB1D7 SINE Alu -5 115 11 2 1642 269 264 40 120 chr1 138595269 138595394 -58600038 - MT2B2 LTR ERVL -322 262 148 2 1642 447 103 0 0 chr1 138596019 138596059 -58599373 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1642 1283 34 0 0 chr1 138596059 138596206 -58599226 - B1_Mm SINE Alu 0 147 1 2 1642 447 103 0 0 chr1 138596206 138596233 -58599199 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1642 678 75 0 0 chr1 138596503 138596596 -58598836 + (TCC)n Simple_repeat Simple_repeat 2 94 0 2 1642 264 258 75 47 chr1 138596614 138596625 -58598807 - ID_B1 SINE B4 -41 183 129 2 1642 383 163 92 11 chr1 138596625 138596712 -58598720 - PB1D10 SINE Alu -23 94 1 2 1642 442 200 0 39 chr1 138596834 138596938 -58598494 - PB1D9 SINE Alu -20 100 1 2 1642 314 288 99 46 chr1 138597127 138597258 -58598174 - ID_B1 SINE B4 -85 139 2 2 1642 198 0 0 0 chr1 138597442 138597464 -58597968 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1642 308 302 27 33 chr1 138597826 138597938 -58597494 - PB1D10 SINE Alu -6 114 1 2 1642 764 59 10 0 chr1 138598008 138598105 -58597327 - B1_Mus2 SINE Alu 0 147 50 2 1642 479 104 0 0 chr1 138598105 138598172 -58597260 + B1_Mus2 SINE Alu 2 68 -79 2 1642 354 83 0 0 chr1 138598529 138598577 -58596855 - PB1D9 SINE Alu -70 50 3 3 1642 755 78 0 0 chr1 138598577 138598676 -58596756 + B1_Mus2 SINE Alu 49 147 0 2 1642 493 94 0 0 chr1 138598699 138598763 -58596669 - B1_Mus2 SINE Alu -83 64 1 2 1642 1790 5 0 0 chr1 138598801 138598994 -58596438 + B2_Mm1a SINE B2 1 193 0 3 1642 1130 147 21 11 chr1 138599017 138599179 -58596253 + B2_Mm2 SINE B2 2 167 -28 3 1642 329 0 0 24 chr1 138599179 138599221 -58596211 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 3 1642 1222 42 0 0 chr1 138599221 138599364 -58596068 - B1_Mus2 SINE Alu -3 144 2 3 1642 1130 147 21 11 chr1 138599364 138599386 -58596046 + B2_Mm2 SINE B2 168 188 -7 3 1642 784 162 81 0 chr1 138599461 138599597 -58595835 - B1_Mus1 SINE Alu -1 147 1 3 1642 644 219 190 31 chr1 138599606 138599796 -58595636 - B3 SINE B2 0 216 27 3 1642 1257 34 0 0 chr1 138599796 138599943 -58595489 - B1_Mus2 SINE Alu 0 147 1 3 1642 580 223 13 161 chr1 138599943 138599979 -58595453 - B3A SINE B2 -163 35 1 3 1642 245 51 26 0 chr1 138599987 138600026 -58595406 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 1642 445 204 23 9 chr1 138600060 138600171 -58595261 - PB1D10 SINE Alu 0 117 1 3 1642 723 216 7 20 chr1 138600210 138600361 -58595071 - B1_Mur2 SINE Alu 0 149 1 3 1642 342 80 0 0 chr1 138600559 138600609 -58594823 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1642 306 315 133 56 chr1 138600917 138601225 -58594207 - MLT1E3 LTR MaLR -175 449 40 3 1642 258 278 43 22 chr1 138601476 138601568 -58593864 + PB1D10 SINE Alu 24 117 0 3 1642 324 250 167 0 chr1 138601661 138601757 -58593675 - PB1D7 SINE Alu -1 119 8 3 1642 806 89 186 0 chr1 138601786 138601910 -58593522 - B1_Mus2 SINE Alu 0 147 1 3 1642 356 111 16 0 chr1 138602034 138602097 -58593335 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1642 544 264 57 0 chr1 138602100 138602240 -58593192 - ID_B1 SINE B4 -21 203 56 3 1642 1119 62 7 7 chr1 138602256 138602403 -58593029 - B1_Mus2 SINE Alu 0 147 1 3 1642 330 299 108 16 chr1 138602465 138602594 -58592838 - ID_B1 SINE B4 0 224 84 3 1642 236 241 35 71 chr1 138602657 138602742 -58592690 - B1F SINE Alu -1 148 67 3 1642 429 309 113 44 chr1 138602907 138602924 -58592508 - LTR73 LTR ERV1 -162 410 394 3 1642 764 178 260 0 chr1 138602924 138603093 -58592339 + B3 SINE B2 4 216 0 3 1642 429 309 113 44 chr1 138603093 138603349 -58592083 - LTR73 LTR ERV1 -179 393 118 3 1642 368 259 168 96 chr1 138603765 138603974 -58591458 + MER21B LTR ERV1 218 441 -422 3 1642 2022 119 26 35 chr1 138604063 138604410 -58591022 + ORR1B2 LTR MaLR 1 344 -23 3 1642 502 291 80 98 chr1 138604454 138604740 -58590692 + MER21B LTR ERV1 582 862 -1 3 1642 516 264 26 26 chr1 138604784 138604936 -58590496 + RSINE1 SINE B4 3 154 -11 3 1642 397 157 180 0 chr1 138605018 138605107 -58590325 - PB1D10 SINE Alu -12 105 1 3 1642 1175 110 17 6 chr1 138605136 138605309 -58590123 + URR1A DNA MER1_type 52 226 0 3 1642 1016 168 110 34 chr1 138605472 138605681 -58589751 - URR1B DNA MER1_type 0 225 1 3 1642 209 327 0 75 chr1 138605763 138605869 -58589563 + MIRb SINE MIR 2 99 -169 3 1642 25 31 0 0 chr1 138606851 138606883 -58588549 + AT_rich Low_complexity Low_complexity 1 32 0 3 1642 461 214 312 0 chr1 138606900 138607054 -58588378 - B3 SINE B2 -10 206 5 3 1642 219 211 0 0 chr1 138607078 138607116 -58588316 - ID SINE ID -153 71 34 3 1642 421 229 113 10 chr1 138607163 138607260 -58588172 - PB1D10 SINE Alu -10 107 1 3 1642 659 120 9 0 chr1 138607284 138607392 -58588040 + (TTCC)n Simple_repeat Simple_repeat 3 111 0 3 1642 825 110 129 34 chr1 138607392 138607570 -58587862 - B2_Mm2 SINE B2 0 195 1 3 1642 994 217 0 68 chr1 138607822 138608044 -58587388 + B3 SINE B2 2 208 -8 3 1642 356 0 32 48 chr1 138608345 138608407 -58587025 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 3 1642 1198 63 0 0 chr1 138608407 138608550 -58586882 - B1_Mm SINE Alu -3 144 2 3 1642 33 0 0 0 chr1 138608551 138608584 -58586848 + AT_rich Low_complexity Low_complexity 1 33 0 3 1642 541 144 145 51 chr1 138608587 138608704 -58586728 + B1_Mur3 SINE Alu 22 149 0 3 1642 716 193 199 0 chr1 138608714 138608880 -58586552 - B3 SINE B2 -17 199 1 3 1642 210 290 81 0 chr1 138608936 138608998 -58586434 + RSINE1 SINE B4 12 78 -87 3 1642 832 263 35 30 chr1 138609013 138609213 -58586219 + B3 SINE B2 2 202 -14 3 1642 6693 26 0 0 chr1 138609338 138610098 -58585334 - L1Md_A LINE L1 0 6582 5823 3 1642 591 261 104 18 chr1 138610756 138610978 -58584454 - Charlie2a DNA MER1_type -2611 250 10 3 1642 369 0 0 0 chr1 138612357 138612398 -58583034 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1642 225 0 0 0 chr1 138612451 138612476 -58582956 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1642 598 268 108 12 chr1 138612544 138612710 -58582722 + B3A SINE B2 1 182 -16 3 1642 254 329 0 12 chr1 138612813 138612893 -58582539 - ID4_ SINE ID -4 79 1 3 1642 192 100 32 48 chr1 138612914 138612977 -58582455 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1642 207 0 0 0 chr1 138612977 138613000 -58582432 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1642 308 204 111 61 chr1 138613001 138613088 -58582344 - B1F2 SINE Alu -43 106 17 3 1642 277 214 116 23 chr1 138613147 138613233 -58582199 + PB1D10 SINE Alu 3 96 -21 3 1642 697 195 63 84 chr1 138613265 138613455 -58581977 - B3 SINE B2 -7 209 24 3 1642 273 211 222 0 chr1 138613458 138613548 -58581884 - PB1D10 SINE Alu -2 115 6 3 1642 784 289 0 10 chr1 138615210 138615409 -58580023 - B3A SINE B2 -1 197 1 3 1642 730 120 20 36 chr1 138615556 138615699 -58579733 + B1_Mus2 SINE Alu 11 147 0 3 1642 1139 62 7 0 chr1 138615749 138615895 -58579537 + B1_Mm SINE Alu 1 147 0 3 1642 470 293 43 75 chr1 138616912 138617100 -58578332 + B3A SINE B2 17 198 0 3 1642 1434 58 5 31 chr1 138617211 138617405 -58578027 + B2_Mm2 SINE B2 1 189 -6 3 1642 362 294 137 11 chr1 138617455 138617637 -58577795 - MIR SINE MIR -11 251 47 3 1642 382 188 219 0 chr1 138617647 138617743 -58577689 + B1_Mur2 SINE Alu 1 117 -32 3 1642 1281 58 0 0 chr1 138617808 138618139 -58577293 + (CCAA)n Simple_repeat Simple_repeat 1 331 0 3 1642 488 175 159 0 chr1 138618190 138618316 -58577116 - B1_Mur3 SINE Alu -2 147 2 3 1642 270 0 0 0 chr1 138618342 138618372 -58577060 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1642 4027 106 4 5 chr1 138618372 138618928 -58576504 - Lx4A LINE L1 0 7058 6503 3 1642 376 156 130 0 chr1 138618928 138619005 -58576427 - L1_Mur2 LINE L1 -6451 261 175 3 1642 636 133 0 0 chr1 138619057 138619177 -58576255 + (CCAA)n Simple_repeat Simple_repeat 1 120 0 3 1642 826 80 0 67 chr1 138619218 138619338 -58576094 + B2_Mm2 SINE B2 1 112 -83 3 1642 351 0 0 0 chr1 138619347 138619386 -58576046 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 1642 204 91 0 0 chr1 138619389 138619408 -58576024 + (A)n Simple_repeat Simple_repeat 1 19 0 3 1642 1137 83 0 0 chr1 138619408 138619552 -58575880 + B1_Mus1 SINE Alu 5 148 0 3 1642 204 91 0 0 chr1 138619552 138619565 -58575867 + (A)n Simple_repeat Simple_repeat 1 13 0 3 1642 405 0 0 0 chr1 138620315 138620360 -58575072 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1642 735 147 75 30 chr1 138621042 138621175 -58574257 - B1_Mur4 SINE Alu 0 150 12 3 1642 370 213 128 87 chr1 138621081 138621230 -58574202 - MT2B2 LTR ERVL -327 257 103 3 1642 465 254 53 8 chr1 138621350 138621481 -58573951 - B1F1 SINE Alu 0 149 13 3 1642 468 238 8 15 chr1 138621537 138621669 -58573763 - L1M2 LINE L1 -869 5274 5144 3 1642 241 48 23 45 chr1 138622305 138622349 -58573083 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 1642 726 254 146 0 chr1 138622509 138622694 -58572738 + B3 SINE B2 1 212 -4 3 1642 249 246 143 18 chr1 138622689 138622801 -58572631 + Charlie24 DNA MER1_type 2301 2426 -24 3 1642 656 145 421 0 chr1 138623550 138623702 -58571730 - B3 SINE B2 0 216 1 3 1642 755 191 0 15 chr1 138623801 138623934 -58571498 - B1_Mus1 SINE Alu -16 132 2 3 1642 1135 135 17 11 chr1 138623953 138624133 -58571299 - B2_Mm2 SINE B2 -14 181 1 3 1642 249 315 96 35 chr1 138624840 138624870 -58570562 - B2_Mm1a SINE B2 -70 123 28 3 1642 396 157 72 13 chr1 138624870 138624949 -58570483 - ID4_ SINE ID -64 88 6 3 1642 432 0 0 0 chr1 138625255 138625303 -58570129 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1642 376 242 146 10 chr1 138625657 138625753 -58569679 + B1F SINE Alu 4 112 -37 3 1642 447 203 72 65 chr1 138625805 138625958 -58569474 - B2_Mm1t SINE B2 -7 186 33 3 1642 1119 63 0 0 chr1 138625903 138626045 -58569387 + B1_Mus1 SINE Alu 7 148 0 3 1642 677 34 90 0 chr1 138626052 138626141 -58569291 - B2_Mm2 SINE B2 -97 98 2 3 1642 595 245 48 48 chr1 138626165 138626371 -58569061 - ID_B1 SINE B4 -17 207 2 3 1642 251 241 57 15 chr1 138626600 138626688 -58568744 - PB1D10 SINE Alu -18 130 37 3 1642 25 0 0 0 chr1 138626945 138626970 -58568462 + AT_rich Low_complexity Low_complexity 1 25 0 3 1642 910 136 290 10 chr1 138628118 138628318 -58567114 + L1_Mus4 LINE L1 6381 6636 0 3 1642 827 146 20 14 chr1 138628560 138628706 -58566726 + B1_Mus2 SINE Alu 1 147 0 3 1642 201 74 0 0 chr1 138628794 138628821 -58566611 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1642 303 51 0 0 chr1 138628823 138628862 -58566570 - B1_Mus2 SINE Alu -6 141 103 3 1642 308 89 0 22 chr1 138628864 138628910 -58566522 - B2_Mm2 SINE B2 -150 45 1 3 1642 494 70 0 14 chr1 138628910 138628982 -58566450 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 4 1642 497 147 11 2 chr1 138628994 138629087 -58566345 - B1_Mur2 SINE Alu -5 144 54 4 1642 1268 146 113 0 chr1 138629104 138629343 -58566089 - ORR1B1 LTR MaLR -128 266 1 4 1642 816 250 58 69 chr1 138629346 138629621 -58565811 - RMER5 LTR ERV1 -221 313 42 4 1642 506 236 65 91 chr1 138630442 138630596 -58564836 + B4 SINE B4 70 219 -73 4 1642 986 79 14 21 chr1 138630460 138630602 -58564830 + B1_Mm SINE Alu 6 146 -1 4 1642 539 198 9 0 chr1 138630611 138630722 -58564710 - Lx7 LINE L1 -16 7680 7569 4 1642 1230 63 28 17 chr1 138630750 138630918 -58564514 + B2_Mm2 SINE B2 15 185 -10 4 1642 1105 50 42 7 chr1 138630918 138631060 -58564372 + B1_Mus2 SINE Alu 1 147 0 4 1642 216 158 0 0 chr1 138631070 138631108 -58564324 + A-rich Low_complexity Low_complexity 1 38 0 4 1642 439 167 117 82 chr1 138631108 138631304 -58564128 - Lx7 LINE L1 -122 7574 7372 4 1642 299 255 112 0 chr1 138631306 138631404 -58564028 - Lx7 LINE L1 -698 6998 6876 4 1642 391 169 0 0 chr1 138631417 138631482 -58563950 - MER31B LTR ERV1 -209 257 193 4 1642 432 0 0 0 chr1 138631500 138631548 -58563884 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1642 183 204 0 0 chr1 138631576 138631620 -58563812 + A-rich Low_complexity Low_complexity 1 44 0 4 1642 243 268 27 27 chr1 138631638 138631711 -58563721 - MER31B LTR ERV1 -359 107 35 4 1642 306 0 0 0 chr1 138631722 138631756 -58563676 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4 1642 1234 27 0 20 chr1 138631756 138631899 -58563533 - B1_Mm SINE Alu -6 141 1 4 1642 766 160 91 8 chr1 138631908 138632040 -58563392 - B1_Mur4 SINE Alu -6 144 2 4 1642 545 191 26 60 chr1 138632073 138632190 -58563242 - PB1D10 SINE Alu 0 117 5 4 1642 714 176 84 0 chr1 138632315 138632446 -58562986 - B1_Mur4 SINE Alu 0 150 9 4 1642 1765 174 104 70 chr1 138632449 138632805 -58562627 + MTD LTR MaLR 3 375 -44 4 1642 180 0 0 0 chr1 138632805 138632825 -58562607 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 4 1642 1165 68 0 0 chr1 138632826 138632972 -58562460 - B1_Mus2 SINE Alu 0 147 2 4 1642 1765 174 104 70 chr1 138632972 138633015 -58562417 + MTD LTR MaLR 376 418 -1 4 1642 705 122 0 0 chr1 138633035 138633150 -58562282 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1642 601 293 52 26 chr1 138633417 138633603 -58561829 + B3A SINE B2 1 184 -11 4 1642 287 244 0 49 chr1 138633635 138633671 -58561761 + polypyrimidine Low_complexity Low_complexity 44 78 0 4 1642 1711 26 0 5 chr1 138633671 138633867 -58561565 - B2_Mm2 SINE B2 0 195 1 4 1642 287 244 0 49 chr1 138633867 138633912 -58561520 + polypyrimidine Low_complexity Low_complexity 1 43 0 4 1642 471 155 0 0 chr1 138633916 138633987 -58561445 - ID4_ SINE ID -11 72 2 4 1642 190 290 28 28 chr1 138633987 138634058 -58561374 - MIRc SINE MIR -116 152 82 4 1642 261 262 25 12 chr1 138634159 138634240 -58561192 - RSINE1 SINE B4 -4 161 80 4 1642 2585 161 35 49 chr1 138634592 138635166 -58560266 - Lx4B LINE L1 -6 7052 6487 4 1642 476 119 27 9 chr1 138635232 138635342 -58560090 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 1642 220 39 0 0 chr1 138635342 138635368 -58560064 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1642 1267 41 0 0 chr1 138635547 138635694 -58559738 - B1_Mus1 SINE Alu 0 148 2 4 1642 1259 71 59 6 chr1 138635694 138635864 -58559568 - B2_Mm2 SINE B2 -15 180 2 4 1642 377 66 0 47 chr1 138635938 138635961 -58559471 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1642 1148 88 0 0 chr1 138635961 138636108 -58559324 + B1_Mm SINE Alu 1 147 0 4 1642 377 66 0 47 chr1 138636108 138636148 -58559284 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1642 879 182 39 28 chr1 138636194 138636363 -58559069 + B3 SINE B2 28 199 -17 4 1642 844 175 0 21 chr1 138636363 138636503 -58558929 - B1_Mur3 SINE Alu -12 137 1 4 1642 879 182 39 28 chr1 138636503 138636514 -58558918 + B3 SINE B2 200 210 -6 4 1642 789 123 245 0 chr1 138636539 138636694 -58558738 + B3 SINE B2 5 197 -19 4 1642 242 29 29 0 chr1 138636700 138636735 -58558697 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 4 1642 216 0 0 0 chr1 138637642 138637666 -58557766 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1642 385 312 11 101 chr1 138637723 138637901 -58557531 + B4A SINE B4 1 162 -130 4 1642 232 368 23 0 chr1 138637921 138638008 -58557424 + RSINE1 SINE B4 77 165 0 4 1642 759 211 205 0 chr1 138638521 138638692 -58556740 - B3 SINE B2 -10 206 1 4 1642 344 232 49 0 chr1 138638695 138638777 -58556655 - B1_Mur1 SINE Alu -1 148 63 4 1642 513 191 104 55 chr1 138638787 138638927 -58556505 - B1_Mur2 SINE Alu -2 148 2 4 1642 246 328 58 8 chr1 138639038 138639158 -58556274 + MLT1A0 LTR MaLR 2 127 -238 4 1642 189 0 0 0 chr1 138639365 138639386 -58556046 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1642 21 36 0 0 chr1 138639462 138639490 -58555942 + AT_rich Low_complexity Low_complexity 1 28 0 4 1642 888 133 42 0 chr1 138639490 138639633 -58555799 - B1_Mur3 SINE Alu 0 149 1 4 1642 565 301 76 24 chr1 138639633 138639701 -58555731 - ID_B1 SINE B4 -1 223 2 4 1642 725 33 0 11 chr1 138639781 138639874 -58555558 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 4 1642 1174 30 0 0 chr1 138639874 138640008 -58555424 - B1_Mus2 SINE Alu -12 135 2 4 1642 180 200 0 0 chr1 138640824 138640864 -58554568 + CT-rich Low_complexity Low_complexity 1 40 0 4 1642 783 218 0 0 chr1 138640867 138641009 -58554423 - B1_Mus1 SINE Alu 0 148 7 4 1642 1056 113 25 0 chr1 138641027 138641186 -58554246 - B2_Mm2 SINE B2 0 195 33 4 1642 287 78 0 19 chr1 138641186 138641238 -58554194 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 4 1642 1228 54 0 0 chr1 138641239 138641386 -58554046 - B1_Mus1 SINE Alu 0 148 2 4 1642 455 99 21 5 chr1 138642479 138642591 -58552841 - B2_Mm2 SINE B2 -3 192 46 4 1642 1321 80 17 0 chr1 138642618 138642794 -58552638 - B2_Mm1t SINE B2 -14 179 1 4 1642 23 33 0 0 chr1 138643140 138643170 -58552262 + AT_rich Low_complexity Low_complexity 1 30 0 4 1642 584 222 52 7 chr1 138643380 138643516 -58551916 - B1F1 SINE Alu -7 142 1 4 1642 1206 117 39 6 chr1 138643519 138643700 -58551732 - B2_Mm2 SINE B2 -7 188 2 4 1642 1470 69 0 5 chr1 138643935 138644124 -58551308 + B2_Mm2 SINE B2 1 188 -7 4 1642 2393 133 46 41 chr1 138644142 138644463 -58550969 - MTC LTR MaLR -5 416 94 4 1642 1659 42 0 0 chr1 138644463 138644656 -58550776 - B2_Mm1a SINE B2 0 193 1 4 1642 2393 133 46 41 chr1 138644656 138644748 -58550684 - MTC LTR MaLR -328 93 1 4 1642 877 208 52 0 chr1 138644770 138644962 -58550470 - B3 SINE B2 -14 202 1 4 1642 331 333 13 0 chr1 138644962 138645040 -58550392 - ID_B1 SINE B4 -67 157 79 4 1642 713 231 7 0 chr1 138645048 138645195 -58550237 - B1_Mur3 SINE Alu 0 149 2 4 1642 520 248 91 14 chr1 138645234 138645377 -58550055 - RSINE1 SINE B4 0 165 12 4 1642 771 303 114 26 chr1 138645396 138645788 -58549644 + L1MB5 LINE L1 5731 6171 -3 4 1642 252 226 19 0 chr1 138646322 138646375 -58549057 - ID4 SINE ID -14 69 16 4 1642 3184 32 45 3 chr1 138646571 138646951 -58548481 + MTA_Mm LTR MaLR 1 396 0 4 1642 632 139 22 34 chr1 138647388 138647566 -58547866 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1642 673 147 41 16 chr1 138647577 138647896 -58547536 + (TG)n Simple_repeat Simple_repeat 1 327 0 4 1642 342 286 13 37 chr1 138647959 138648083 -58547349 - PB1D10 SINE Alu -2 115 1 4 1642 405 0 0 0 chr1 138648842 138648887 -58546545 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1642 23 33 0 0 chr1 138648950 138648980 -58546452 + AT_rich Low_complexity Low_complexity 1 30 0 4 1642 469 227 66 29 chr1 138648989 138649125 -58546307 - B1_Mur1 SINE Alu -8 141 1 4 1642 410 292 18 0 chr1 138649126 138649239 -58546193 - PB1D10 SINE Alu -1 116 2 4 1642 820 212 87 63 chr1 138649245 138649451 -58545981 - B3 SINE B2 -5 211 1 4 1642 573 255 106 0 chr1 138649935 138650076 -58545356 - ID_B1 SINE B4 -62 162 7 4 1642 1168 49 14 0 chr1 138650101 138650245 -58545187 + B1_Mus2 SINE Alu 2 147 0 4 1642 220 306 8 0 chr1 138650263 138650338 -58545094 + CT-rich Low_complexity Low_complexity 1 75 0 4 1642 398 217 0 12 chr1 138650338 138650422 -58545010 - ID4 SINE ID 0 83 1 4 1642 1757 161 44 72 chr1 138650960 138651260 -58544172 + ORR1B1 LTR MaLR 41 348 -46 4 1642 1045 136 0 0 chr1 138651260 138651407 -58544025 + B1_Mus1 SINE Alu 2 148 0 4 1642 1757 161 44 72 chr1 138651407 138651467 -58543965 + ORR1B1 LTR MaLR 349 391 -3 4 1642 915 69 6 199 chr1 138651932 138652113 -58543319 - B1_Mus2 SINE Alu -1 146 1 4 1642 1245 14 0 33 chr1 138652143 138652294 -58543138 - B1_Mm SINE Alu -1 146 1 4 1642 1655 36 0 0 chr1 138652323 138652515 -58542917 - B2_Mm1a SINE B2 0 193 2 4 1642 871 92 8 8 chr1 138652515 138652647 -58542785 + URR1B DNA MER1_type 94 225 0 4 1642 182 37 0 36 chr1 138653621 138653649 -58541783 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1642 351 44 0 0 chr1 138653823 138653868 -58541564 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1642 3308 23 21 5 chr1 138653868 138654255 -58541177 - MTA_Mm LTR MaLR -3 393 1 4 1642 751 229 0 63 chr1 138654280 138654471 -58540961 - B3A SINE B2 -15 183 5 4 1642 942 334 96 18 chr1 138654667 138655051 -58540381 + MER21B LTR ERV1 216 629 -234 4 1642 1234 54 0 0 chr1 138655071 138655219 -58540213 - B1_Mus1 SINE Alu 0 148 1 4 1642 366 319 93 72 chr1 138655223 138655544 -58539888 - ORR1E LTR MaLR -5 354 27 4 1642 325 377 34 7 chr1 138655557 138655704 -58539728 + MER21B LTR ERV1 623 773 -90 4 1642 247 182 51 13 chr1 138656137 138656215 -58539217 + (TTAA)n Simple_repeat Simple_repeat 3 83 0 4 1642 262 197 66 66 chr1 138656230 138656306 -58539126 - ID_B1 SINE B4 0 224 149 5 1642 220 274 48 253 chr1 138656243 138656308 -58539124 - B1F SINE Alu -8 141 71 5 1642 1101 66 0 0 chr1 138656308 138656445 -58538987 + B1_Mus2 SINE Alu 2 138 -9 5 1642 264 30 0 0 chr1 138656445 138656478 -58538954 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 1642 220 274 48 253 chr1 138656478 138656508 -58538924 - B1F SINE Alu -79 70 11 5 1642 286 304 0 0 chr1 138656508 138656577 -58538855 - ID_B1 SINE B4 -65 159 91 5 1642 365 308 153 66 chr1 138656707 138657040 -58538392 - MTE2b LTR MaLR -2 377 7 5 1642 514 227 54 18 chr1 138657119 138657231 -58538201 + PB1D10 SINE Alu 1 116 -1 5 1642 635 262 0 0 chr1 138657231 138657353 -58538079 + RSINE1 SINE B4 3 124 -41 5 1642 1224 88 0 0 chr1 138657353 138657524 -58537908 + (TTCCC)n Simple_repeat Simple_repeat 2 172 0 5 1642 924 177 0 0 chr1 138657528 138657703 -58537729 + CT-rich Low_complexity Low_complexity 3 177 0 5 1642 416 21 0 0 chr1 138657703 138657751 -58537681 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 5 1642 1193 81 127 0 chr1 138657751 138657924 -58537508 - B2_Mm2 SINE B2 0 195 1 5 1642 529 137 0 17 chr1 138657969 138658088 -58537344 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1642 323 222 16 0 chr1 138658200 138658263 -58537169 + ID4 SINE ID 13 76 -7 5 1642 395 288 198 30 chr1 138658277 138658678 -58536754 - L2a LINE L2 -288 3138 2653 5 1642 2692 175 115 46 chr1 138658906 138659552 -58535880 - RMER6C LTR ERVK 0 690 1 5 1642 291 54 0 0 chr1 138659952 138659989 -58535443 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 5 1642 1149 112 0 6 chr1 138659989 138660150 -58535282 - B2_Mm2 SINE B2 -35 160 1 5 1642 210 226 32 16 chr1 138660188 138660251 -58535181 + B4A SINE B4 82 145 -147 5 1642 336 239 0 0 chr1 138660197 138660268 -58535164 + PB1D10 SINE Alu 7 77 -40 5 1642 882 254 58 65 chr1 138660290 138660584 -58534848 + B4 SINE B4 1 292 0 5 1642 722 236 59 29 chr1 138660881 138661051 -58534381 - B3A SINE B2 -16 182 8 5 1642 1319 27 0 0 chr1 138661071 138661219 -58534213 + B1_Mus1 SINE Alu 1 148 0 5 1642 489 106 0 0 chr1 138661359 138661425 -58534007 - B1_Mur3 SINE Alu -83 66 1 5 1642 253 274 65 89 chr1 138661425 138661453 -58533979 - MT2B2 LTR ERVL -327 257 167 5 1642 372 197 0 0 chr1 138661453 138661519 -58533913 - PB1D10 SINE Alu -49 68 3 5 1642 603 0 0 0 chr1 138661585 138661652 -58533780 + (GGA)n Simple_repeat Simple_repeat 3 69 0 5 1642 210 71 0 0 chr1 138661668 138661696 -58533736 + (CAG)n Simple_repeat Simple_repeat 2 29 0 5 1642 365 311 42 8 chr1 138662017 138662137 -58533295 + L4 LINE RTE 1317 1440 -589 5 1642 335 270 94 69 chr1 138662501 138662660 -58532772 - RSINE1 SINE B4 -1 164 2 5 1642 645 318 96 11 chr1 138662859 138663119 -58532313 + Charlie21a DNA MER1_type 418 699 -514 5 1642 377 138 0 0 chr1 138663119 138663177 -58532255 + RSINE1 SINE B4 3 60 -105 5 1642 391 245 119 28 chr1 138663204 138663313 -58532119 + MIR SINE MIR 75 193 -69 5 1642 189 0 0 0 chr1 138664477 138664498 -58530934 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 5 1642 1182 48 0 7 chr1 138664640 138664779 -58530653 + B1_Mus1 SINE Alu 2 140 -8 5 1642 293 0 27 0 chr1 138664779 138664816 -58530616 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1642 233 255 35 14 chr1 138664923 138664992 -58530440 - L2c LINE L2 -5 3382 3290 5 1642 180 0 0 0 chr1 138665447 138665467 -58529965 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1642 682 313 41 4 chr1 138665689 138665933 -58529499 - Helitron3Na_Mam RC Helitron -51 435 183 5 1642 663 221 8 0 chr1 138666069 138666196 -58529236 - B1_Mus2 SINE Alu -1 146 19 5 1642 614 149 30 0 chr1 138666227 138666361 -58529071 + CT-rich Low_complexity Low_complexity 3 140 0 5 1642 227 170 0 41 chr1 138666364 138666413 -58529019 - B1F SINE Alu 0 149 103 5 1642 853 245 268 26 chr1 138666447 138666832 -58528600 + RCHARR1 DNA MER1_type 4 481 -493 5 1642 1114 70 0 0 chr1 138666827 138666970 -58528462 - B1_Mus1 SINE Alu 0 148 6 5 1642 27 0 0 0 chr1 138666986 138667013 -58528419 + AT_rich Low_complexity Low_complexity 1 27 0 5 1642 289 194 0 162 chr1 138667055 138667135 -58528297 - RSINE1 SINE B4 0 165 99 5 1642 393 239 43 0 chr1 138667167 138667259 -58528173 - B1_Mur4 SINE Alu -16 134 39 5 1642 418 270 54 9 chr1 138667288 138667400 -58528032 - B3 SINE B2 -6 210 94 5 1642 312 247 37 0 chr1 138667499 138667580 -58527852 - B3A SINE B2 -86 112 29 5 1642 306 259 0 58 chr1 138667587 138667673 -58527759 - B4 SINE B4 -210 82 2 5 1642 643 250 129 26 chr1 138667696 138667861 -58527571 + B3 SINE B2 4 193 -23 5 1642 2586 83 3 0 chr1 138667861 138668187 -58527245 - ORR1A2 LTR MaLR 0 327 1 5 1642 643 250 129 26 chr1 138668187 138668214 -58527218 + B3 SINE B2 194 216 0 5 1642 680 186 59 79 chr1 138668248 138668400 -58527032 + B1_Mur1 SINE Alu 1 149 0 5 1642 862 244 62 4 chr1 138668434 138668677 -58526755 + RCHARR1 DNA MER1_type 495 751 -223 5 1642 1203 74 0 0 chr1 138668683 138668831 -58526601 - B1_Mus1 SINE Alu 0 148 1 5 1642 180 0 0 0 chr1 138668840 138668860 -58526572 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1642 1199 106 5 62 chr1 138668937 138669129 -58526303 - B2_Mm2 SINE B2 -14 181 1 5 1642 207 69 0 0 chr1 138669211 138669240 -58526192 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1642 436 207 91 0 chr1 138669251 138669372 -58526060 + RCHARR1 DNA MER1_type 843 974 0 5 1642 446 198 12 0 chr1 138670101 138670182 -58525250 + PB1D10 SINE Alu 1 82 -35 5 1642 987 137 44 4 chr1 138670288 138670464 -58524968 - ORR1D1 LTR MaLR -201 177 1 5 1642 557 221 66 0 chr1 138670465 138670587 -58524845 - B3 SINE B2 -24 192 63 5 1642 1636 182 40 3 chr1 138670738 138671036 -58524396 - MTD LTR MaLR -14 405 97 5 1642 324 218 110 44 chr1 138671485 138671500 -58523932 - PB1 SINE Alu -20 107 94 5 1642 1208 62 0 0 chr1 138671500 138671646 -58523786 - B1_Mus2 SINE Alu 0 147 2 5 1642 522 188 1 1 chr1 138671646 138671727 -58523705 - B1_Mus1 SINE Alu -34 93 6 5 1642 22 0 0 0 chr1 138671741 138671763 -58523669 + AT_rich Low_complexity Low_complexity 1 22 0 5 1642 618 223 121 11 chr1 138671791 138671981 -58523451 + B3 SINE B2 3 213 -3 5 1642 336 161 0 0 chr1 138672092 138672154 -58523278 + CT-rich Low_complexity Low_complexity 3 64 0 5 1642 247 114 68 0 chr1 138672272 138672316 -58523116 - B2_Mm2 SINE B2 -11 184 138 5 1643 188 255 0 21 chr1 138675293 138675341 -58520091 - L3b LINE CR1 -11 471 425 5 1643 483 273 7 59 chr1 138676667 138676819 -58518613 + RSINE1 SINE B4 5 148 -17 5 1643 201 74 0 0 chr1 138676941 138676968 -58518464 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1643 525 105 0 109 chr1 138677584 138677710 -58517722 - B1_Mus2 SINE Alu 0 149 42 5 1643 854 206 0 14 chr1 138679940 138680083 -58515349 + B1_Mur3 SINE Alu 9 149 0 5 1643 192 77 0 0 chr1 138680088 138680114 -58515318 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 5 1643 198 71 0 0 chr1 138681497 138681525 -58513907 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1643 1208 56 0 0 chr1 138681525 138681668 -58513764 - B1_Mm SINE Alu -4 143 1 5 1643 694 51 25 33 chr1 138683439 138683561 -58511871 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 5 1643 764 187 187 0 chr1 138683684 138683866 -58511566 - B3 SINE B2 0 216 1 5 1643 821 216 0 7 chr1 138684071 138684220 -58511212 - B1_Mur1 SINE Alu 0 149 2 5 1643 246 32 0 0 chr1 138684394 138684425 -58511007 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 5 1643 244 196 39 0 chr1 138684485 138684536 -58510896 - U5 snRNA snRNA -60 56 4 5 1643 212 207 65 109 chr1 138684550 138684642 -58510790 + MIR SINE MIR 13 100 -162 5 1643 294 143 0 0 chr1 138685388 138685437 -58509995 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 5 1643 544 244 78 12 chr1 138685447 138685613 -58509819 - B2_Mm2 SINE B2 -18 177 1 5 1643 399 317 8 16 chr1 138686313 138686435 -58508997 - ID_B1 SINE B4 -10 214 94 5 1643 296 296 0 77 chr1 138686745 138686760 -58508672 - BC1_Mm scRNA scRNA -44 108 94 5 1643 1176 54 0 26 chr1 138686760 138686912 -58508520 - B1_Mus1 SINE Alu 0 148 1 5 1643 296 296 0 77 chr1 138686912 138687013 -58508419 - BC1_Mm scRNA scRNA -59 93 1 5 1643 294 268 28 0 chr1 138687095 138687166 -58508266 + ID SINE ID 1 73 -151 5 1643 455 0 0 18 chr1 138687167 138687223 -58508209 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1643 2281 237 49 40 chr1 138687350 138687881 -58507551 - Lx6 LINE L1 -6 7454 6919 5 1643 585 0 0 0 chr1 138687887 138687952 -58507480 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1643 1619 27 27 0 chr1 138688545 138688733 -58506699 - B2_Mm1a SINE B2 0 193 1 5 1643 942 141 0 0 chr1 138688865 138689021 -58506411 + (TCC)n Simple_repeat Simple_repeat 1 156 0 5 1643 479 291 68 50 chr1 138689027 138689248 -58506184 - B4A SINE B4 0 292 68 5 1643 1986 128 22 78 chr1 138689235 138689592 -58505840 + ORR1C1 LTR MaLR 42 378 0 5 1643 266 174 0 0 chr1 138690437 138690483 -58504949 + ORR1D2 LTR MaLR 325 370 0 5 1643 316 209 265 5 chr1 138690603 138690702 -58504730 - ORR1D2 LTR MaLR -254 116 1 5 1643 1423 195 44 9 chr1 138690822 138691138 -58504294 - Lx7 LINE L1 -16 7680 7354 5 1643 185 194 0 27 chr1 138691145 138691196 -58504236 + A-rich Low_complexity Low_complexity 5 55 0 5 1643 821 182 212 0 chr1 138691196 138691366 -58504066 + B3 SINE B2 5 210 -6 5 1643 185 194 0 27 chr1 138691366 138691388 -58504044 + A-rich Low_complexity Low_complexity 56 75 0 5 1643 2256 210 18 35 chr1 138691397 138691688 -58503744 - Lx7 LINE L1 -336 7360 7070 5 1643 414 0 0 0 chr1 138691688 138691734 -58503698 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1643 2256 210 18 35 chr1 138691734 138691935 -58503497 - Lx7 LINE L1 -627 7069 6876 5 1643 206 358 106 72 chr1 138691947 138692335 -58503097 - L2b LINE L2 -1 3374 2974 6 1643 234 281 226 38 chr1 138692455 138692747 -58502685 - L2c LINE L2 -82 3305 2959 6 1643 1076 94 0 6 chr1 138693617 138693777 -58501655 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 6 1643 1170 30 0 0 chr1 138693777 138693910 -58501522 - B1_Mus1 SINE Alu -12 136 4 6 1643 666 0 0 0 chr1 138693975 138694049 -58501383 + (TTC)n Simple_repeat Simple_repeat 3 76 0 6 1643 985 131 11 0 chr1 138694049 138694225 -58501207 + (TCC)n Simple_repeat Simple_repeat 3 180 0 6 1643 26 30 0 0 chr1 138695777 138695810 -58499622 + AT_rich Low_complexity Low_complexity 1 33 0 6 1643 1054 153 0 0 chr1 138696005 138696168 -58499264 - B2_Mm2 SINE B2 -31 164 2 6 1643 257 256 0 37 chr1 138696606 138696687 -58498745 - ID2 SINE ID -4 79 2 6 1643 207 281 47 35 chr1 138696775 138696860 -58498572 - L2b LINE L2 -177 3198 3113 6 1643 1179 68 0 20 chr1 138696885 138697036 -58498396 - B1_Mus1 SINE Alu 0 148 1 6 1643 717 12 0 0 chr1 138697493 138697575 -58497857 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 1643 684 12 0 0 chr1 138697872 138697956 -58497476 - L1Md_T LINE L1 0 6582 6499 6 1643 369 227 13 0 chr1 138697985 138698060 -58497372 - ID4_ SINE ID -6 77 2 6 1643 366 232 59 35 chr1 138698161 138698246 -58497186 - PB1D7 SINE Alu 0 120 34 6 1643 233 227 117 58 chr1 138698282 138698385 -58497047 - PB1D10 SINE Alu -5 112 4 6 1643 587 39 13 0 chr1 138698501 138698579 -58496853 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1643 222 37 0 0 chr1 138698603 138698630 -58496802 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 6 1643 252 123 15 44 chr1 138698905 138698965 -58496467 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 6 1643 333 47 0 0 chr1 138698965 138699008 -58496424 + (TATG)n Simple_repeat Simple_repeat 2 44 0 6 1643 252 123 15 44 chr1 138699008 138699015 -58496417 + (TCTA)n Simple_repeat Simple_repeat 1 7 0 6 1643 238 244 305 0 chr1 138699109 138699191 -58496241 - PB1D7 SINE Alu -3 117 11 6 1643 812 228 50 20 chr1 138699453 138699654 -58495778 - B3 SINE B2 -9 207 1 6 1643 507 254 0 9 chr1 138699657 138699772 -58495660 - PB1D10 SINE Alu -3 114 1 6 1643 468 51 0 0 chr1 138700764 138700823 -58494609 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 6 1643 265 207 35 0 chr1 138701695 138701753 -58493679 + Arthur1B DNA Tip100 95 154 -1071 6 1643 243 61 0 0 chr1 138701846 138701879 -58493553 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1643 3476 23 5 0 chr1 138702086 138702480 -58492952 + MTA_Mm LTR MaLR 1 396 0 6 1643 189 308 39 0 chr1 138702743 138702795 -58492637 - L2c LINE L2 -12 3375 3322 6 1643 2577 77 3 12 chr1 138703063 138703393 -58492039 - ORR1A2 LTR MaLR 0 327 1 6 1643 653 211 60 0 chr1 138703763 138703896 -58491536 + B1_Mur2 SINE Alu 2 142 -7 6 1643 1155 82 0 0 chr1 138704235 138704382 -58491050 - B1_Mus1 SINE Alu 0 148 2 6 1643 3180 26 55 28 chr1 138704564 138704964 -58490468 - IAPLTR2_Mm LTR ERVK 0 411 1 6 1643 6532 61 12 11 chr1 138704966 138705794 -58489638 - IAPEz-int LTR ERVK -2 6479 5651 6 1643 2846 53 0 3 chr1 138705787 138706130 -58489302 - IAPEz-int LTR ERVK -4781 1700 1359 6 1643 4765 81 6 21 chr1 138706130 138706785 -58488647 - IAPEz-int LTR ERVK -5819 662 18 6 1643 3596 35 44 56 chr1 138706810 138707291 -58488141 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1643 503 213 0 0 chr1 138707614 138707708 -58487724 + RSINE1 SINE B4 2 95 -70 6 1643 326 283 156 90 chr1 138707838 138708077 -58487355 - ORR1E LTR MaLR 0 379 99 6 1643 549 0 0 0 chr1 138709404 138709465 -58485967 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1643 858 287 80 12 chr1 138709524 138709774 -58485658 - B4A SINE B4 -21 271 5 6 1643 315 224 92 39 chr1 138710147 138710277 -58485155 - MLT1K LTR MaLR -124 471 335 6 1643 296 314 43 37 chr1 138710376 138710538 -58484894 - MLT1K LTR MaLR -425 170 8 6 1643 1755 61 4 112 chr1 138710811 138711087 -58484345 + L1_Mus2 LINE L1 6320 6565 -1 6 1643 717 164 9 0 chr1 138711424 138711540 -58483892 + B1_Mur2 SINE Alu 29 145 -4 6 1643 798 248 46 78 chr1 138711664 138711696 -58483736 - B4 SINE B4 0 292 264 6 1643 357 24 0 0 chr1 138711696 138711738 -58483694 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1643 798 248 46 78 chr1 138711738 138711924 -58483508 - B4 SINE B4 -29 263 81 6 1643 405 0 0 0 chr1 138711955 138712000 -58483432 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1643 710 246 36 25 chr1 138712008 138712204 -58483228 - B4 SINE B4 -94 198 1 6 1643 236 247 79 0 chr1 138712223 138712312 -58483120 - L1M5 LINE L1 -728 5512 5417 6 1643 701 219 7 14 chr1 138712331 138712479 -58482953 - B1_Mus2 SINE Alu 0 147 1 6 1643 1011 205 74 0 chr1 138712486 138712676 -58482756 - B3 SINE B2 -12 204 1 6 1643 218 235 157 29 chr1 138712708 138712778 -58482654 + ID2 SINE ID 5 83 0 6 1643 248 94 218 36 chr1 138712837 138712892 -58482540 + PB1D10 SINE Alu 52 116 -1 6 1643 1218 155 39 10 chr1 138713219 138713427 -58482005 - B3 SINE B2 0 216 3 6 1643 289 297 99 0 chr1 138714107 138714208 -58481224 + PB1D7 SINE Alu 6 116 -4 6 1643 288 0 0 0 chr1 138715329 138715361 -58480071 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1643 234 328 0 15 chr1 138715362 138715427 -58480005 - tRNA-Ala-GCA tRNA tRNA -11 64 1 6 1643 332 258 0 0 chr1 138715370 138715432 -58480000 - ID4 SINE ID -20 63 2 6 1643 385 267 22 11 chr1 138715443 138715534 -58479898 - PB1D10 SINE Alu -5 112 21 6 1643 388 117 0 0 chr1 138715796 138715856 -58479576 - B1_Mur4 SINE Alu -5 145 86 6 1643 2622 117 45 0 chr1 138715859 138716236 -58479196 - ORR1B1 LTR MaLR 0 394 1 6 1643 718 212 124 6 chr1 138716246 138716407 -58479025 - B3A SINE B2 -18 180 1 6 1643 360 199 22 129 chr1 138716505 138716566 -58478866 + MT2B LTR ERVL 121 244 -340 6 1643 593 161 0 0 chr1 138716566 138716653 -58478779 + B1_Mur1 SINE Alu 21 107 -42 6 1643 699 182 155 0 chr1 138716905 138717092 -58478340 - Lx9 LINE L1 -1 7643 7428 6 1643 544 235 96 0 chr1 138717085 138717221 -58478211 + Lx9 LINE L1 7242 7390 -254 6 1643 339 248 83 45 chr1 138717231 138717387 -58478045 - L1MA8 LINE L1 -352 5939 5778 6 1643 2590 126 20 15 chr1 138717474 138717878 -58477554 + MTB_Mm LTR MaLR 1 406 -1 6 1643 5441 156 138 18 chr1 138717884 138719001 -58476431 + MTB_Mm-int LTR MaLR 8 1258 0 6 1643 23 0 0 0 chr1 138719012 138719035 -58476397 + AT_rich Low_complexity Low_complexity 1 23 0 6 1643 200 171 43 0 chr1 138719035 138719105 -58476327 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 6 1643 369 0 0 0 chr1 138719164 138719205 -58476227 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1643 1105 182 34 5 chr1 138719235 138719439 -58475993 - B3 SINE B2 -6 210 1 6 1643 637 245 13 20 chr1 138719452 138719602 -58475830 - B4 SINE B4 -69 223 75 6 1643 263 192 8 60 chr1 138719995 138720128 -58475304 + C-rich Low_complexity Low_complexity 3 128 0 6 1643 567 256 85 17 chr1 138720156 138720384 -58475048 - MLT2C1 LTR ERVL -210 254 3 6 1643 212 319 95 41 chr1 138721077 138721224 -58474208 + MIRc SINE MIR 114 268 0 6 1643 619 158 16 29 chr1 138721386 138721510 -58473922 - LTRIS2 LTR ERV1 -78 486 254 6 1643 279 0 0 0 chr1 138721669 138721700 -58473732 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1643 782 85 0 0 chr1 138722024 138722130 -58473302 + B2_Mm2 SINE B2 2 107 -88 6 1643 1499 149 46 12 chr1 138724608 138724970 -58470462 - MTC LTR MaLR -8 413 3 6 1643 228 35 0 0 chr1 138724994 138725023 -58470409 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1643 1068 74 0 0 chr1 138725025 138725160 -58470272 - B1_Mus2 SINE Alu -12 135 1 6 1643 417 277 0 21 chr1 138725160 138725256 -58470176 - B2_Mm2 SINE B2 -101 94 1 6 1643 291 28 0 0 chr1 138725259 138725295 -58470137 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1643 778 225 90 5 chr1 138725299 138725487 -58469945 + B3 SINE B2 3 206 -10 6 1643 371 183 12 0 chr1 138725865 138725947 -58469485 + GA-rich Low_complexity Low_complexity 3 85 0 6 1643 277 279 0 0 chr1 138725967 138726028 -58469404 - B4A SINE B4 -13 279 219 6 1643 388 338 49 31 chr1 138726056 138726279 -58469153 - B4A SINE B4 -2 290 64 6 1643 541 322 73 10 chr1 138726317 138726521 -58468911 - B4A SINE B4 -72 220 4 6 1643 2147 135 3 0 chr1 138726964 138727290 -58468142 - ORR1A2 LTR MaLR 0 327 1 6 1643 389 235 116 16 chr1 138728518 138728639 -58466793 + B1_Mur2 SINE Alu 6 138 -11 6 1643 279 190 0 0 chr1 138728761 138728819 -58466613 + (CACG)n Simple_repeat Simple_repeat 2 59 0 6 1643 183 291 73 0 chr1 138729037 138729092 -58466340 + MIR SINE MIR 34 92 -170 6 1643 4498 12 0 6 chr1 138729755 138730294 -58465138 - L1Md_T LINE L1 0 6582 6082 6 1643 230 271 0 0 chr1 138730635 138730683 -58464749 - ID4_ SINE ID -14 69 22 6 1643 267 54 0 0 chr1 138730746 138730783 -58464649 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1643 297 308 88 29 chr1 138731071 138731208 -58464224 + ID_B1 SINE B4 80 224 0 6 1643 743 225 48 20 chr1 138731262 138731450 -58463982 + B3A SINE B2 5 183 -33 6 1643 1436 94 5 0 chr1 138731984 138732175 -58463257 + B2_Mm1a SINE B2 1 192 -1 6 1643 308 285 40 16 chr1 138732336 138732510 -58462922 + (TATG)n Simple_repeat Simple_repeat 1 178 0 6 1643 802 241 78 60 chr1 138732510 138732793 -58462639 - B4A SINE B4 0 292 5 6 1643 244 351 13 0 chr1 138732907 138732984 -58462448 - ID4 SINE ID -5 78 1 6 1643 25 0 0 0 chr1 138733446 138733471 -58461961 + AT_rich Low_complexity Low_complexity 1 25 0 6 1643 209 174 43 0 chr1 138733526 138733572 -58461860 - L3 LINE CR1 -257 4232 4185 6 1643 603 258 108 126 chr1 138733657 138733900 -58461532 + MTE2a LTR MaLR 1 207 -172 6 1643 6997 22 17 14 chr1 138733900 138734726 -58460706 - L1Md_F3 LINE L1 0 6584 5757 6 1643 603 258 108 126 chr1 138734726 138734854 -58460578 + MTE2a LTR MaLR 208 365 -14 6 1643 24 0 0 0 chr1 138736425 138736449 -58458983 + GC_rich Low_complexity Low_complexity 1 24 0 7 1643 222 62 0 0 chr1 138736886 138736918 -58458514 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1643 1163 82 0 0 chr1 138738281 138738428 -58457004 - B1_Mus1 SINE Alu -1 147 1 7 1643 728 189 34 20 chr1 138738731 138738877 -58456555 - B1_Mur4 SINE Alu -2 148 1 7 1643 183 139 0 0 chr1 138741557 138741593 -58453839 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 7 1643 544 188 144 30 chr1 138744008 138744140 -58451292 + B1_Mus2 SINE Alu 1 147 0 7 1643 186 143 0 0 chr1 138746399 138746434 -58448998 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 7 1643 1153 167 36 36 chr1 138746650 138746874 -58448558 + URR1B DNA MER1_type 2 225 0 7 1643 1651 144 82 41 chr1 138746965 138747305 -58448127 + ORR1B1 LTR MaLR 41 394 0 7 1643 342 171 0 50 chr1 138747482 138747562 -58447870 - B3 SINE B2 -139 77 2 7 1643 614 172 42 60 chr1 138748215 138748382 -58447050 + B2_Mm2 SINE B2 1 164 -31 7 1643 279 79 0 0 chr1 138748602 138748640 -58446792 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1643 188 333 122 23 chr1 138749191 138749363 -58446069 + L2 LINE L2 2674 2862 -557 7 1643 21 36 0 0 chr1 138750109 138750137 -58445295 + AT_rich Low_complexity Low_complexity 1 28 0 7 1643 1108 91 0 0 chr1 138752152 138752295 -58443137 + B1_Mm SINE Alu 2 144 -3 7 1643 297 0 0 0 chr1 138752295 138752328 -58443104 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1643 21 36 0 0 chr1 138752627 138752655 -58442777 + AT_rich Low_complexity Low_complexity 1 28 0 7 1643 690 256 24 0 chr1 138752797 138752961 -58442471 - B3 SINE B2 -1 215 48 7 1643 2438 62 19 0 chr1 138753466 138753787 -58441645 + L1Md_A LINE L1 6256 6582 0 7 1643 195 42 0 0 chr1 138753797 138753821 -58441611 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1643 329 244 47 0 chr1 138755099 138755185 -58440247 - B3A SINE B2 -38 160 71 7 1643 378 0 0 0 chr1 138756078 138756120 -58439312 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1643 457 311 91 6 chr1 138756518 138756683 -58438749 + B3A SINE B2 4 182 -16 7 1643 183 42 0 0 chr1 138756791 138756815 -58438617 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1643 208 261 14 14 chr1 138759493 138759563 -58435869 + GA-rich Low_complexity Low_complexity 4 73 0 7 1643 271 267 55 45 chr1 138760447 138760557 -58434875 - PB1D10 SINE Alu -2 115 5 7 1643 315 0 0 0 chr1 138760675 138760710 -58434722 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1643 210 37 0 0 chr1 138760932 138760959 -58434473 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 7 1643 564 294 50 0 chr1 138760963 138761123 -58434309 - B3A SINE B2 -29 169 2 7 1643 629 219 54 7 chr1 138761822 138761969 -58433463 - RSINE1 SINE B4 -1 164 11 7 1643 503 276 8 0 chr1 138764335 138764462 -58430970 + B1_Mur3 SINE Alu 1 128 -21 7 1643 333 62 0 0 chr1 138764573 138764621 -58430811 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1643 267 31 0 0 chr1 138764729 138764761 -58430671 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1643 427 283 112 5 chr1 138767210 138767398 -58428034 + L1MB2 LINE L1 5962 6169 -2 7 1643 1369 77 16 0 chr1 138769099 138769282 -58426150 + B2_Mm1a SINE B2 2 187 -6 7 1643 210 233 0 0 chr1 138770583 138770626 -58424806 - RSINE1 SINE B4 -57 108 66 7 1643 469 313 9 74 chr1 138772217 138772229 -58423203 - ID_B1 SINE B4 -18 206 185 7 1643 593 195 0 0 chr1 138772229 138772342 -58423090 - B1_Mus2 SINE Alu -32 115 3 7 1643 469 313 9 74 chr1 138772342 138772434 -58422998 - ID_B1 SINE B4 -18 184 4 7 1643 376 253 0 0 chr1 138772493 138772576 -58422856 - ID_B1 SINE B4 -20 204 122 7 1643 238 246 0 42 chr1 138772642 138772714 -58422718 - B1F SINE Alu 0 149 81 7 1643 251 276 86 39 chr1 138772654 138772782 -58422650 - ID_B1 SINE B4 -10 214 81 7 1643 279 127 17 52 chr1 138772858 138772916 -58422516 + B1_Mur4 SINE Alu 1 56 -94 7 1643 355 309 102 24 chr1 138773157 138773323 -58422109 + MER2 DNA MER2_type 121 299 -46 7 1643 645 162 18 9 chr1 138773576 138773688 -58421744 + B1_Mur2 SINE Alu 19 131 -18 7 1643 601 191 92 42 chr1 138773703 138773845 -58421587 + B1_Mur3 SINE Alu 1 149 0 7 1643 222 190 0 33 chr1 138773846 138773906 -58421526 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 7 1643 22 0 0 0 chr1 138774170 138774192 -58421240 + AT_rich Low_complexity Low_complexity 1 22 0 7 1643 996 190 39 20 chr1 138777166 138777370 -58418062 + B3 SINE B2 9 216 0 7 1643 222 299 26 13 chr1 138779614 138779692 -58415740 - PB1D7 SINE Alu -7 113 35 7 1643 21 0 0 0 chr1 138780179 138780200 -58415232 + AT_rich Low_complexity Low_complexity 1 21 0 7 1643 721 256 28 28 chr1 138780914 138781127 -58414305 - MTD LTR MaLR -198 221 9 7 1643 367 280 0 21 chr1 138781122 138781217 -58414215 + B1F1 SINE Alu 36 128 -21 7 1643 359 271 28 63 chr1 138781283 138781425 -58414007 + ID_B1 SINE B4 82 218 -6 7 1643 198 0 0 0 chr1 138781428 138781450 -58413982 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 7 1643 310 259 229 9 chr1 138782896 138783005 -58412427 + B1_Mur2 SINE Alu 2 134 -15 7 1643 719 208 0 0 chr1 138783112 138783242 -58412190 + B3 SINE B2 1 130 -86 7 1643 232 158 35 0 chr1 138783327 138783384 -58412048 + GA-rich Low_complexity Low_complexity 6 64 0 7 1643 219 69 0 0 chr1 138783593 138783622 -58411810 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 7 1643 458 149 11 11 chr1 138783935 138784023 -58411409 - MTD LTR MaLR -8 411 324 7 1643 201 289 82 27 chr1 138784526 138784657 -58410775 - MIRb SINE MIR -88 174 44 7 1643 217 167 29 29 chr1 138784659 138784727 -58410705 + (CATA)n Simple_repeat Simple_repeat 2 69 0 7 1643 1312 80 37 0 chr1 138784870 138785057 -58410375 - B2_Mm2 SINE B2 0 195 2 7 1643 207 88 0 0 chr1 138785236 138785270 -58410162 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1643 223 289 68 38 chr1 138786502 138786635 -58408797 + L2a LINE L2 3277 3413 -13 7 1643 1008 229 98 48 chr1 138788287 138788622 -58406810 - MTD LTR MaLR -21 398 47 7 1643 23 0 0 0 chr1 138788808 138788831 -58406601 + AT_rich Low_complexity Low_complexity 1 23 0 7 1643 282 295 97 9 chr1 138789211 138789324 -58406108 + B1F SINE Alu 1 123 -26 7 1643 302 156 16 0 chr1 138789849 138789913 -58405519 + (CGGGG)n Simple_repeat Simple_repeat 5 69 0 7 1643 482 283 125 0 chr1 138790416 138790568 -58404864 + B3A SINE B2 1 171 -27 7 1643 378 0 0 0 chr1 138791221 138791263 -58404169 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 7 1643 477 324 39 11 chr1 138791846 138792024 -58403408 - Lx7 LINE L1 -388 7308 7126 7 1643 451 224 102 22 chr1 138792300 138792437 -58402995 - B1_Mur3 SINE Alu 0 149 2 7 1643 239 239 0 0 chr1 138792675 138792721 -58402711 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1643 313 243 53 26 chr1 138793978 138794092 -58401340 - MIR SINE MIR -49 213 97 7 1643 1169 216 50 18 chr1 138794891 138795169 -58400263 + MTD LTR MaLR 12 298 -121 7 1643 21 0 0 0 chr1 138795971 138795992 -58399440 + AT_rich Low_complexity Low_complexity 1 21 0 7 1643 468 0 0 0 chr1 138796577 138796629 -58398803 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1643 797 48 0 0 chr1 138796816 138796920 -58398512 - B1_Mm SINE Alu 0 147 44 7 1643 310 228 60 60 chr1 138796851 138796935 -58398497 - MT2B LTR ERVL -337 264 181 7 1643 318 98 0 0 chr1 138797199 138797250 -58398182 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1643 1445 181 106 90 chr1 138798009 138798386 -58397046 + ORR1C2 LTR MaLR 2 384 0 7 1643 642 201 24 48 chr1 138798704 138798871 -58396561 + URR1A DNA MER1_type 64 226 0 7 1643 198 0 0 0 chr1 138800310 138800332 -58395100 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 7 1643 317 269 122 47 chr1 138801776 138801924 -58393508 + Charlie1 DNA MER1_type 53 211 -2570 7 1643 298 71 0 0 chr1 138802361 138802403 -58393029 + U2 snRNA snRNA 1 42 -146 7 1643 552 162 25 41 chr1 138803883 138804005 -58391427 + PB1D9 SINE Alu 1 120 0 7 1643 498 17 0 0 chr1 138804334 138804393 -58391039 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1643 365 317 0 0 chr1 138804479 138804580 -58390852 + PB1D10 SINE Alu 3 103 -14 7 1643 247 311 0 63 chr1 138805003 138805082 -58390350 + ID4_ SINE ID 5 78 -5 7 1644 565 250 65 20 chr1 138805444 138805644 -58389788 - ID_B1 SINE B4 -12 212 4 7 1644 428 191 236 0 chr1 138805773 138805883 -58389549 + B1_Mur1 SINE Alu 1 136 -13 7 1644 302 187 27 0 chr1 138805905 138805980 -58389452 + G-rich Low_complexity Low_complexity 4 80 0 7 1644 567 0 0 0 chr1 138806610 138806673 -58388759 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 7 1644 180 0 0 0 chr1 138808259 138808279 -58387153 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1644 230 200 0 0 chr1 138809487 138809532 -58385900 + PB1D10 SINE Alu 52 96 -21 7 1644 272 290 0 0 chr1 138810687 138810756 -58384676 + ID4 SINE ID 15 83 0 7 1644 524 148 38 47 chr1 138811032 138811138 -58384294 - B1_Mur2 SINE Alu 0 149 45 7 1644 246 116 0 0 chr1 138811163 138811206 -58384226 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1644 183 80 0 0 chr1 138812809 138812834 -58382598 + (CAG)n Simple_repeat Simple_repeat 2 26 0 7 1644 1009 65 14 0 chr1 138813068 138813207 -58382225 - B1_Mus2 SINE Alu 0 147 7 7 1644 489 194 49 122 chr1 138813073 138813237 -58382195 - B4 SINE B4 -71 221 70 8 1644 652 221 0 22 chr1 138813385 138813524 -58381908 + B1_Mur4 SINE Alu 1 136 -14 8 1644 198 0 0 0 chr1 138813526 138813548 -58381884 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1644 330 178 27 14 chr1 138813548 138813622 -58381810 + B1_Mus2 SINE Alu 73 147 0 8 1644 326 327 68 50 chr1 138813711 138813933 -58381499 + B4A SINE B4 64 289 -3 8 1644 61 45 0 0 chr1 138814099 138814188 -58381244 + AT_rich Low_complexity Low_complexity 1 89 0 8 1644 333 227 253 11 chr1 138814547 138814721 -58380711 + B3 SINE B2 1 216 0 8 1644 1161 74 0 0 chr1 138814832 138814980 -58380452 + B1_Mus1 SINE Alu 1 148 0 8 1644 218 164 213 0 chr1 138815115 138815176 -58380256 - B1_Mur2 SINE Alu 0 149 76 8 1644 437 209 76 0 chr1 138815194 138815299 -58380133 - B1_Mur4 SINE Alu -24 126 14 8 1644 1167 29 0 7 chr1 138816214 138816352 -58379080 + B1_Mm SINE Alu 2 138 -9 8 1644 285 51 0 0 chr1 138816352 138816391 -58379041 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1644 216 0 0 0 chr1 138817873 138817897 -58377535 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1644 416 236 113 0 chr1 138817982 138818088 -58377344 + B1_Mur1 SINE Alu 29 146 -3 8 1644 661 159 83 8 chr1 138818141 138818274 -58377158 - B1_Mus1 SINE Alu 0 148 6 8 1644 265 245 0 0 chr1 138818960 138819009 -58376423 - ID4_ SINE ID -1 82 34 8 1644 268 313 59 25 chr1 138819061 138819179 -58376253 - ID_B1 SINE B4 -4 220 99 8 1644 256 296 0 65 chr1 138819705 138819828 -58375604 + Arthur1B DNA Tip100 31 145 -1080 8 1644 27 0 0 0 chr1 138819838 138819865 -58375567 + AT_rich Low_complexity Low_complexity 1 27 0 8 1644 1639 36 0 10 chr1 138819865 138820060 -58375372 - B2_Mm1a SINE B2 0 193 1 8 1644 525 204 45 9 chr1 138820408 138820550 -58374882 - B1_Mur3 SINE Alu -1 148 5 8 1644 903 234 111 21 chr1 138820814 138821102 -58374330 - MTD LTR MaLR 0 419 106 8 1644 435 254 40 40 chr1 138821104 138821252 -58374180 + B1_Mur2 SINE Alu 2 149 0 8 1644 195 100 0 0 chr1 138821267 138821297 -58374135 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1644 541 197 30 5 chr1 138821297 138821417 -58374015 - MTD LTR MaLR -295 124 6 8 1644 243 0 0 0 chr1 138821424 138821451 -58373981 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1644 197 93 0 65 chr1 138822046 138822092 -58373340 + G-rich Low_complexity Low_complexity 1 43 0 8 1644 302 319 11 0 chr1 138825532 138825623 -58369809 + GA-rich Low_complexity Low_complexity 2 93 0 8 1644 258 232 29 0 chr1 138825649 138825718 -58369714 - B1F2 SINE Alu -47 102 32 8 1644 255 223 219 19 chr1 138825785 138825890 -58369542 + B1_Mm SINE Alu 23 148 0 8 1644 411 113 0 0 chr1 138825907 138825969 -58369463 + (GGGA)n Simple_repeat Simple_repeat 3 64 0 8 1644 775 152 270 0 chr1 138826166 138826344 -58369088 - URR1A DNA MER1_type 0 226 1 8 1644 393 141 0 0 chr1 138826984 138827069 -58368363 + (TC)n Simple_repeat Simple_repeat 1 85 0 8 1644 375 176 22 0 chr1 138828571 138828662 -58366770 - URR1B DNA MER1_type 0 225 133 8 1644 315 250 80 36 chr1 138829127 138829264 -58366168 + B1F SINE Alu 1 143 -6 8 1644 531 0 0 0 chr1 138829651 138829710 -58365722 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1644 233 125 50 0 chr1 138829744 138829784 -58365648 - B1_Mur2 SINE Alu -56 93 52 8 1644 553 163 9 37 chr1 138830007 138830115 -58365317 - PB1D10 SINE Alu 0 117 13 8 1644 345 47 0 0 chr1 138830916 138830959 -58364473 + (CACG)n Simple_repeat Simple_repeat 2 44 0 8 1644 354 220 221 26 chr1 138831007 138831161 -58364271 + B3A SINE B2 2 185 -13 8 1644 536 192 44 74 chr1 138831276 138831411 -58364021 + B1_Mur1 SINE Alu 1 131 -18 8 1644 203 138 0 0 chr1 138831494 138831523 -58363909 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 8 1644 209 122 24 0 chr1 138832404 138832445 -58362987 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 8 1644 384 119 0 0 chr1 138832787 138832846 -58362586 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1644 351 0 0 0 chr1 138832846 138832884 -58362548 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1644 395 287 37 28 chr1 138833671 138833833 -58361599 + Charlie9 DNA MER1_type 1 161 -2596 8 1644 241 253 36 12 chr1 138833857 138833941 -58361491 + (TG)n Simple_repeat Simple_repeat 1 86 0 8 1644 854 93 47 4 chr1 138833960 138834225 -58361207 + (TG)n Simple_repeat Simple_repeat 1 276 0 8 1644 732 209 21 21 chr1 138834898 138835040 -58360392 - B1F SINE Alu -2 147 6 8 1644 573 271 19 38 chr1 138834901 138835058 -58360374 - ID_B1 SINE B4 -2 222 69 8 1644 324 70 0 0 chr1 138837719 138837762 -58357670 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1644 252 0 0 0 chr1 138838882 138838910 -58356522 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1644 22 35 0 0 chr1 138841033 138841062 -58354370 + AT_rich Low_complexity Low_complexity 1 29 0 8 1644 233 183 0 16 chr1 138845850 138845911 -58349521 + CT-rich Low_complexity Low_complexity 5 64 0 8 1644 505 200 7 100 chr1 138848205 138848355 -58347077 + B1_Mur2 SINE Alu 2 137 -12 8 1644 471 60 0 0 chr1 138848357 138848424 -58347008 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 1644 450 0 0 0 chr1 138848424 138848474 -58346958 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1644 22 0 0 0 chr1 138848605 138848627 -58346805 + GC_rich Low_complexity Low_complexity 1 22 0 8 1644 276 77 0 0 chr1 138848962 138849001 -58346431 + (GGA)n Simple_repeat Simple_repeat 3 41 0 8 1644 250 235 0 0 chr1 138850004 138850055 -58345377 + GA-rich Low_complexity Low_complexity 2 52 0 8 1644 218 0 0 86 chr1 138850487 138850522 -58344910 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1644 759 184 50 0 chr1 138851174 138851315 -58344117 - B1_Mur4 SINE Alu 0 150 3 8 1644 743 242 40 10 chr1 138851592 138851792 -58343640 + B3 SINE B2 1 206 -10 8 1644 255 354 87 48 chr1 138851874 138852082 -58343350 + ID_B1 SINE B4 1 216 -8 8 1644 707 46 218 18 chr1 138852094 138852204 -58343228 + B1_Mus2 SINE Alu 2 133 -14 8 1644 704 214 232 0 chr1 138852936 138853104 -58342328 + B3 SINE B2 1 207 -9 8 1644 207 0 0 0 chr1 138853426 138853449 -58341983 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1644 1009 54 0 8 chr1 138853449 138853580 -58341852 - B1_Mus2 SINE Alu -9 138 9 8 1644 472 253 69 101 chr1 138853580 138853638 -58341794 - B4 SINE B4 -75 217 35 8 1644 1124 71 0 0 chr1 138853862 138854003 -58341429 + B1_Mus1 SINE Alu 2 142 -6 8 1644 24 0 0 0 chr1 138854623 138854647 -58340785 + GC_rich Low_complexity Low_complexity 1 24 0 8 1644 198 91 0 0 chr1 138855089 138855122 -58340310 + (C)n Simple_repeat Simple_repeat 1 33 0 8 1644 608 0 14 0 chr1 138855206 138855278 -58340154 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1644 334 297 16 78 chr1 138855722 138855850 -58339582 + PB1D7 SINE Alu 1 120 0 8 1644 248 271 0 17 chr1 138855913 138855973 -58339459 + ID2 SINE ID 3 61 -22 8 1644 213 39 0 0 chr1 138856096 138856122 -58339310 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1644 299 175 34 34 chr1 138856331 138856390 -58339042 + B1_Mus1 SINE Alu 2 60 -88 8 1644 651 104 21 10 chr1 138856460 138856557 -58338875 + B1_Mus2 SINE Alu 42 139 -8 8 1644 768 124 32 16 chr1 138857901 138858024 -58337408 - B1_Mus2 SINE Alu -1 146 22 8 1644 234 212 89 111 chr1 138857952 138858042 -58337390 + YREP_Mm Unknown Unknown 222 309 -1503 8 1644 337 301 26 0 chr1 138858298 138858411 -58337021 + PB1D10 SINE Alu 1 116 -1 8 1644 434 171 34 0 chr1 138858415 138858503 -58336929 + B3 SINE B2 1 91 -125 8 1644 485 95 0 23 chr1 138858898 138858984 -58336448 + L1Md_F2 LINE L1 6499 6582 0 8 1644 688 153 121 8 chr1 138858996 138859128 -58336304 + B1_Mus1 SINE Alu 2 148 0 8 1644 32 26 0 0 chr1 138859128 138859167 -58336265 + AT_rich Low_complexity Low_complexity 1 39 0 8 1644 366 202 95 75 chr1 138859635 138859755 -58335677 + ID_B1 SINE B4 19 187 -37 8 1644 3225 106 7 17 chr1 138859798 138860258 -58335174 - Lx LINE L1 -271 6383 5929 8 1644 712 130 7 33 chr1 138860258 138860409 -58335023 + Lx LINE L1 6507 6653 -1 8 1644 235 196 71 0 chr1 138860953 138861009 -58334423 - ID4 SINE ID -22 61 2 8 1644 192 200 0 0 chr1 138861123 138861163 -58334269 + CT-rich Low_complexity Low_complexity 1 40 0 8 1644 216 351 42 67 chr1 138861164 138861177 -58334255 - B4A SINE B4 -48 244 232 8 1644 828 191 7 33 chr1 138861177 138861329 -58334103 - B1_Mur3 SINE Alu 0 149 2 8 1644 614 266 8 28 chr1 138861329 138861481 -58333951 - ID_B1 SINE B4 -61 231 79 8 1644 308 242 168 40 chr1 138861482 138861607 -58333825 - B1F SINE Alu -2 147 7 8 1644 259 275 146 24 chr1 138862015 138862078 -58333354 - B2_Mm1a SINE B2 0 193 121 8 1644 336 125 0 0 chr1 138862078 138862142 -58333290 + (TATG)n Simple_repeat Simple_repeat 1 64 0 8 1644 522 178 198 0 chr1 138862142 138862243 -58333189 - B3 SINE B2 -87 129 9 8 1644 255 321 58 58 chr1 138862421 138862560 -58332872 + B4A SINE B4 35 173 -119 8 1644 365 248 75 9 chr1 138862487 138862593 -58332839 + PB1 SINE Alu 12 124 -3 8 1644 911 151 7 20 chr1 138864282 138864431 -58331001 + B1_Mus2 SINE Alu 1 147 0 8 1644 1071 102 0 7 chr1 138864433 138864570 -58330862 + B1_Mus1 SINE Alu 1 137 -11 8 1644 388 0 39 0 chr1 138864570 138864622 -58330810 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1644 701 201 0 36 chr1 138864951 138865090 -58330342 + B1_Mus1 SINE Alu 3 136 -12 8 1644 441 54 0 0 chr1 138865110 138865166 -58330266 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 8 1644 249 156 403 0 chr1 138865306 138865383 -58330049 - PB1D9 SINE Alu -10 110 3 9 1644 609 182 15 60 chr1 138865635 138865769 -58329663 + B3 SINE B2 2 129 -87 9 1644 344 229 23 46 chr1 138865850 138865937 -58329495 + PB1D10 SINE Alu 1 85 -32 9 1644 502 243 26 105 chr1 138866271 138866423 -58329009 + MTE2b LTR MaLR 4 143 -236 9 1644 433 283 144 113 chr1 138866423 138866443 -58328989 + MT2A LTR ERVL 4 185 -348 9 1644 351 65 0 0 chr1 138866443 138866489 -58328943 + (TTG)n Simple_repeat Simple_repeat 3 48 0 9 1644 433 283 144 113 chr1 138866489 138866635 -58328797 + MT2A LTR ERVL 186 331 -202 9 1644 247 373 62 75 chr1 138866898 138867124 -58328308 + ID_B1 SINE B4 2 224 0 9 1644 384 250 165 24 chr1 138866998 138867125 -58328307 + B1F2 SINE Alu 5 149 0 9 1644 233 250 14 0 chr1 138867130 138867202 -58328230 + B4A SINE B4 220 292 0 9 1644 285 308 50 21 chr1 138867235 138867368 -58328064 - PB1D10 SINE Alu -7 142 5 9 1644 183 114 0 0 chr1 138868617 138868652 -58326780 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 9 1644 985 75 1 1 chr1 138868652 138868783 -58326649 - B1_Mus1 SINE Alu 0 150 18 9 1644 1432 80 16 0 chr1 138868783 138868971 -58326461 - B2_Mm2 SINE B2 0 195 5 9 1644 931 131 14 20 chr1 138868971 138868987 -58326445 - B1_Mur4 SINE Alu -133 17 4 9 1644 909 148 0 0 chr1 138868988 138869130 -58326302 - B1_Mur1 SINE Alu -5 144 3 9 1644 216 226 0 117 chr1 138869271 138869331 -58326101 + PB1D7 SINE Alu 67 119 -1 9 1644 368 283 0 21 chr1 138869623 138869717 -58325715 + B1F1 SINE Alu 58 149 0 9 1644 616 151 0 117 chr1 138870027 138870107 -58325325 - B3 SINE B2 -108 108 29 9 1644 386 20 20 0 chr1 138870107 138870158 -58325274 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 9 1644 1167 36 0 7 chr1 138870158 138870296 -58325136 - B1_Mm SINE Alu -9 138 2 9 1644 616 151 0 117 chr1 138870296 138870334 -58325098 - B3 SINE B2 -188 28 4 9 1644 1093 72 0 0 chr1 138871081 138871220 -58324212 + B1_Mm SINE Alu 2 140 -7 9 1644 500 0 0 16 chr1 138871223 138871284 -58324148 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 9 1644 420 178 246 33 chr1 138871443 138871565 -58323867 - B1_Mur2 SINE Alu -1 148 1 9 1644 213 280 0 0 chr1 138871583 138871633 -58323799 + CT-rich Low_complexity Low_complexity 4 53 0 9 1644 419 236 132 0 chr1 138871636 138871742 -58323690 - PB1D7 SINE Alu 0 120 1 9 1644 190 280 60 0 chr1 138872200 138872250 -58323182 - MIRm SINE MIR -195 81 29 9 1644 378 0 0 0 chr1 138872473 138872515 -58322917 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1644 645 262 30 30 chr1 138872536 138872733 -58322699 + B3A SINE B2 2 198 0 9 1644 453 115 0 0 chr1 138872868 138872955 -58322477 + (TC)n Simple_repeat Simple_repeat 2 88 0 9 1644 725 197 15 0 chr1 138872973 138873110 -58322322 - B1_Mur3 SINE Alu -8 141 3 9 1644 545 236 27 27 chr1 138873129 138873277 -58322155 - B1_Mur1 SINE Alu -1 148 1 9 1644 242 313 89 20 chr1 138873283 138873384 -58322048 + MIR SINE MIR 121 228 -34 9 1644 980 116 0 26 chr1 138873400 138873551 -58321881 + B1_Mus1 SINE Alu 2 148 0 9 1644 558 0 0 0 chr1 138873691 138873753 -58321679 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1644 303 28 0 0 chr1 138873863 138873899 -58321533 + (GA)n Simple_repeat Simple_repeat 1 36 0 9 1644 882 164 0 0 chr1 138874023 138874163 -58321269 - B1_Mus2 SINE Alu -7 140 1 9 1644 276 272 0 80 chr1 138875374 138875462 -58319970 - PB1D10 SINE Alu -10 107 27 9 1644 435 68 0 0 chr1 138876075 138876134 -58319298 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1644 434 172 114 57 chr1 138876429 138876534 -58318898 + B1_Mur4 SINE Alu 40 150 0 9 1644 531 189 26 126 chr1 138876621 138876772 -58318660 + B1_Mur2 SINE Alu 12 147 -2 9 1644 400 141 28 0 chr1 138876799 138876870 -58318562 + ID4 SINE ID 2 74 -9 9 1644 29 0 0 0 chr1 138877785 138877814 -58317618 + AT_rich Low_complexity Low_complexity 1 29 0 9 1644 3762 87 4 12 chr1 138877814 138878327 -58317105 - L1_Mus2 LINE L1 0 6566 6058 9 1644 942 97 19 58 chr1 138878338 138878492 -58316940 - B1_Mus1 SINE Alu 0 148 1 9 1644 615 149 7 95 chr1 138878515 138878534 -58316898 - ID_B1 SINE B4 0 224 213 9 1644 378 0 0 0 chr1 138878534 138878576 -58316856 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 9 1644 615 149 7 95 chr1 138878576 138878704 -58316728 - ID_B1 SINE B4 -12 212 90 9 1644 512 287 60 66 chr1 138878708 138878891 -58316541 - B3A SINE B2 0 198 17 9 1644 215 170 21 0 chr1 138878893 138878940 -58316492 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1644 336 231 8 161 chr1 138878957 138879009 -58316423 - ID_B1 SINE B4 -39 185 143 9 1644 1223 41 0 7 chr1 138879009 138879158 -58316274 - B1_Mus1 SINE Alu 0 148 1 9 1644 336 219 13 43 chr1 138879158 138879238 -58316194 - ID_B1 SINE B4 -145 147 78 9 1644 396 0 0 0 chr1 138879273 138879317 -58316115 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1644 230 307 113 67 chr1 138880659 138880825 -58314607 - MIRc SINE MIR -11 251 76 9 1644 2160 180 24 17 chr1 138880881 138881169 -58314263 + MTC LTR MaLR 1 292 -129 9 1644 1215 48 0 0 chr1 138881169 138881316 -58314116 - B1_Mus2 SINE Alu 0 147 1 9 1644 2160 180 24 17 chr1 138881316 138881445 -58313987 + MTC LTR MaLR 293 421 0 9 1644 1137 61 7 13 chr1 138881485 138881634 -58313798 + B1_Mus1 SINE Alu 1 148 0 9 1644 236 257 42 14 chr1 138881729 138881800 -58313632 + B1_Mus2 SINE Alu 72 144 -3 9 1644 818 186 8 15 chr1 138881861 138882132 -58313300 + CT-rich Low_complexity Low_complexity 1 268 0 9 1644 504 137 0 0 chr1 138882142 138882215 -58313217 - ID_B1 SINE B4 -17 207 135 9 1644 379 198 80 40 chr1 138882215 138882242 -58313190 - B1F SINE Alu -17 132 29 9 1644 436 322 7 58 chr1 138882510 138882665 -58312767 - B1F SINE Alu 0 149 3 9 1644 291 28 0 0 chr1 138882938 138882974 -58312458 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1644 1074 46 39 0 chr1 138882974 138883104 -58312328 - B1_Mus1 SINE Alu -13 135 1 9 1644 599 296 81 6 chr1 138883205 138883378 -58312054 + MER2 DNA MER2_type 158 343 -2 9 1644 599 21 19 67 chr1 138883624 138883728 -58311704 + L1Md_F3 LINE L1 6486 6584 0 9 1644 247 274 55 0 chr1 138884252 138884325 -58311107 - MLT1J LTR MaLR -6 506 430 9 1644 378 346 37 6 chr1 138884468 138884647 -58310785 - MLT1J LTR MaLR -313 199 44 9 1644 943 215 10 34 chr1 138884920 138885127 -58310305 + B3 SINE B2 2 203 -13 9 1644 230 250 130 40 chr1 138885148 138885248 -58310184 - MER3 DNA MER1_type -85 124 16 9 1644 553 232 53 196 chr1 138885351 138885560 -58309872 + B3A SINE B2 9 188 -10 9 1644 268 287 202 37 chr1 138885567 138885632 -58309800 + ID SINE ID 2 83 -141 9 1644 363 312 0 44 chr1 138885632 138885746 -58309686 + PB1D10 SINE Alu 5 113 -4 9 1644 351 246 203 0 chr1 138885749 138885867 -58309565 + B1F2 SINE Alu 3 144 -5 9 1644 785 151 17 1 chr1 138885888 138886029 -58309403 + B1_Mur4 SINE Alu 1 142 -5 9 1644 207 282 28 17 chr1 138886217 138886301 -58309131 + MIR SINE MIR 109 191 -71 9 1644 315 0 0 0 chr1 138886327 138886362 -58309070 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1644 1125 169 227 49 chr1 138886405 138886691 -58308741 + RMER10B LTR ERVL 15 351 -47 9 1644 354 131 15 62 chr1 138886782 138886847 -58308585 - U7 snRNA snRNA -1 62 1 9 1644 306 243 27 0 chr1 138886922 138886996 -58308436 - ID SINE ID -148 76 1 9 1644 391 195 98 0 chr1 138887171 138887253 -58308179 - B1_Mur2 SINE Alu -56 93 4 9 1644 1063 95 133 0 chr1 138887319 138887477 -58307955 - B2_Mm1t SINE B2 -14 179 1 9 1644 219 176 19 19 chr1 138887595 138887647 -58307785 + (CAA)n Simple_repeat Simple_repeat 3 54 0 9 1644 829 280 58 27 chr1 138887678 138888008 -58307424 - Lx7 LINE L1 -422 7274 6935 9 1644 238 197 83 14 chr1 138887990 138888062 -58307370 + Lx7 LINE L1 7606 7682 -14 9 1644 1132 90 7 0 chr1 138888078 138888223 -58307209 + B1_Mus1 SINE Alu 2 147 -1 9 1644 198 0 0 0 chr1 138888272 138888294 -58307138 + (CAA)n Simple_repeat Simple_repeat 2 23 0 9 1644 228 143 0 0 chr1 138888390 138888432 -58307000 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1644 1039 132 179 26 chr1 138889057 138889252 -58306180 + URR1A DNA MER1_type 2 226 0 9 1644 1418 74 10 10 chr1 138889270 138889462 -58305970 + B2_Mm1t SINE B2 2 193 0 9 1644 708 201 49 23 chr1 138890679 138890875 -58304557 + B3 SINE B2 6 194 -1 9 1644 278 225 0 0 chr1 138890962 138891033 -58304399 + L1MA6 LINE L1 5937 6007 -293 9 1644 817 208 34 34 chr1 138891077 138891256 -58304176 + B3 SINE B2 1 179 -37 9 1644 808 181 0 13 chr1 138891277 138891428 -58304004 - B1_Mur3 SINE Alu 0 149 1 9 1644 21 36 0 0 chr1 138891560 138891588 -58303844 + AT_rich Low_complexity Low_complexity 1 28 0 9 1644 592 186 0 17 chr1 138891599 138891714 -58303718 + B1_Mur1 SINE Alu 8 120 -29 9 1644 25 83 0 0 chr1 138892076 138892136 -58303296 + AT_rich Low_complexity Low_complexity 1 60 0 9 1644 1435 73 0 45 chr1 138892264 138892465 -58302967 - B2_Mm2 SINE B2 -3 192 1 9 1644 1174 88 0 0 chr1 138892512 138892659 -58302773 + B1_Mm SINE Alu 1 147 0 9 1644 237 132 0 0 chr1 138892659 138892697 -58302735 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1644 4923 99 42 12 chr1 138892766 138893489 -58301943 - Lx LINE L1 0 6654 5911 9 1644 251 377 26 9 chr1 138893652 138893767 -58301665 - L2b LINE L2 -15 3360 3244 9 1644 186 278 37 0 chr1 138893908 138893962 -58301470 - L2b LINE L2 -339 3087 3032 9 1644 1005 121 0 0 chr1 138894009 138894174 -58301258 + (TG)n Simple_repeat Simple_repeat 2 166 0 9 1644 210 150 0 0 chr1 138894238 138894278 -58301154 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1644 332 202 0 12 chr1 138894717 138894797 -58300635 + PB1D10 SINE Alu 27 105 -12 1 1644 1234 68 65 43 chr1 138894918 138895102 -58300330 - B2_Mm2 SINE B2 -6 189 2 1 1644 797 65 16 0 chr1 138895112 138895235 -58300197 - L1_Mus3 LINE L1 -3 6635 6511 1 1644 252 0 0 0 chr1 138895240 138895268 -58300164 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1644 257 234 0 135 chr1 138895285 138895359 -58300073 + ZP3AR Satellite Satellite 38 101 -111 1 1644 649 247 15 99 chr1 138895480 138895682 -58299750 - B3 SINE B2 -1 215 31 1 1644 1141 82 7 0 chr1 138895682 138895828 -58299604 + B1_Mus2 SINE Alu 1 147 0 1 1644 456 232 13 217 chr1 138895828 138895888 -58299544 - B3A SINE B2 -153 45 1 1 1644 410 257 18 9 chr1 138895972 138896082 -58299350 + PB1D7 SINE Alu 3 113 -7 1 1644 337 221 62 38 chr1 138896083 138896163 -58299269 + ID2 SINE ID 2 83 0 1 1644 635 179 197 48 chr1 138896520 138896708 -58298724 - B3 SINE B2 0 216 1 1 1644 843 216 0 20 chr1 138896745 138896896 -58298536 + B1_Mur3 SINE Alu 1 148 -1 1 1644 1042 112 14 158 chr1 138896898 138897120 -58298312 + B2_Mm1a SINE B2 2 191 -2 1 1644 2126 174 121 69 chr1 138897200 138897780 -58297652 - RMER19C LTR ERVK 0 611 2 1 1644 279 0 0 0 chr1 138897849 138897880 -58297552 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1644 967 77 0 0 chr1 138897880 138898010 -58297422 - B1_Mus1 SINE Alu -9 139 10 1 1644 255 364 51 13 chr1 138898928 138899084 -58296348 + L2 LINE L2 2413 2574 -845 1 1644 273 322 45 11 chr1 138899285 138899373 -58296059 - ID_B1 SINE B4 -60 164 74 1 1644 541 176 0 100 chr1 138899409 138899529 -58295903 - B1_Mur4 SINE Alu -42 108 1 1 1644 234 297 53 106 chr1 138899411 138899543 -58295889 - B4 SINE B4 -98 194 70 1 1644 222 37 0 0 chr1 138899577 138899604 -58295828 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 1644 422 290 58 69 chr1 138900084 138900096 -58295336 - B3 SINE B2 -15 201 190 1 1644 387 252 112 16 chr1 138900096 138900221 -58295211 - B1F2 SINE Alu -11 138 2 1 1644 422 290 58 69 chr1 138900221 138900382 -58295050 - B3 SINE B2 -27 189 30 1 1644 982 188 38 19 chr1 138900491 138900703 -58294729 + B3 SINE B2 1 216 0 1 1644 321 185 0 0 chr1 138900707 138900772 -58294660 + A-rich Low_complexity Low_complexity 1 65 0 1 1644 202 314 100 0 chr1 138900929 138900999 -58294433 - MIRm SINE MIR -147 129 53 1 1644 222 116 0 0 chr1 138901618 138901661 -58293771 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1644 1219 54 0 0 chr1 138901664 138901811 -58293621 - B1_Mm SINE Alu 0 147 1 1 1644 333 185 0 0 chr1 138901848 138901913 -58293519 + CT-rich Low_complexity Low_complexity 2 66 0 1 1644 245 29 29 0 chr1 138901913 138901947 -58293485 + (CAT)n Simple_repeat Simple_repeat 1 35 0 1 1644 243 241 69 0 chr1 138901947 138902005 -58293427 - ID SINE ID -140 84 23 1 1644 253 269 0 0 chr1 138901954 138902006 -58293426 - ID4_ SINE ID -11 72 21 1 1644 307 382 48 7 chr1 138902151 138902296 -58293136 - ID_B1 SINE B4 -73 151 1 1 1644 327 201 1 15 chr1 138902363 138902436 -58292996 + ID4 SINE ID 5 77 -75 1 1644 354 270 80 18 chr1 138902460 138902573 -58292859 + PB1D7 SINE Alu 1 120 0 1 1644 283 333 20 0 chr1 138902744 138902843 -58292589 - PB1 SINE Alu -8 119 19 1 1644 337 304 71 21 chr1 138902849 138902990 -58292442 - B1F SINE Alu -1 148 1 1 1644 956 137 7 0 chr1 138904028 138904167 -58291265 - B1_Mus1 SINE Alu -7 141 2 1 1644 618 249 45 45 chr1 138904188 138904386 -58291046 - B3A SINE B2 0 198 1 1 1644 331 290 0 20 chr1 138904681 138904783 -58290649 + G-rich Low_complexity Low_complexity 3 102 0 1 1644 215 182 29 29 chr1 138904937 138905005 -58290427 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 1 1644 257 207 0 49 chr1 138905005 138905066 -58290366 - RSINE1 SINE B4 -21 144 87 1 1644 816 143 42 14 chr1 138905124 138905266 -58290166 - B1_Mur4 SINE Alu -1 149 4 1 1644 272 302 0 78 chr1 138905282 138905397 -58290035 - B1_Mur1 SINE Alu -1 148 43 1 1644 723 84 0 0 chr1 138905805 138905912 -58289520 - B1_Mus1 SINE Alu -40 108 2 1 1644 1102 88 0 0 chr1 138907681 138907828 -58287604 - B1_Mm SINE Alu 0 147 1 1 1644 198 0 0 0 chr1 138907872 138907894 -58287538 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1644 212 135 0 0 chr1 138907900 138907937 -58287495 - RSINE1 SINE B4 -29 136 100 1 1644 684 175 29 21 chr1 138908022 138908162 -58287270 - B1_Mus1 SINE Alu -1 147 7 1 1644 410 265 0 30 chr1 138908370 138908471 -58286961 - PB1D10 SINE Alu -7 110 13 1 1644 5092 34 0 0 chr1 138908524 138909113 -58286319 + L1Md_T LINE L1 5992 6580 -2 1 1644 509 244 52 7 chr1 138909143 138909279 -58286153 + B1F SINE Alu 6 147 -2 1 1644 551 157 200 0 chr1 138909368 138909483 -58285949 + B1_Mus2 SINE Alu 9 146 -1 1 1644 432 0 0 0 chr1 138909562 138909610 -58285822 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 1644 1190 51 0 0 chr1 138909611 138909769 -58285663 - B2_Mm2 SINE B2 -37 158 1 1 1644 231 238 0 0 chr1 138911387 138911429 -58284003 - B1_Mus1 SINE Alu -95 53 12 1 1644 252 86 0 0 chr1 138911574 138911609 -58283823 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1644 1085 89 7 0 chr1 138911611 138911757 -58283675 - B1_Mm SINE Alu 0 147 1 1 1644 1110 212 49 30 chr1 138911910 138912173 -58283259 + ORR1D1 LTR MaLR 107 374 0 1 1644 366 185 0 90 chr1 138912272 138912361 -58283071 - B3A SINE B2 -117 81 1 1 1644 441 0 0 0 chr1 138913078 138913127 -58282305 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1644 270 0 0 0 chr1 138914330 138914360 -58281072 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1644 804 325 82 12 chr1 138914813 138915156 -58280276 - Lx8 LINE L1 -187 7286 6920 1 1644 181 0 54 81 chr1 138915202 138915224 -58280208 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1644 1205 75 0 0 chr1 138915224 138915371 -58280061 - B1_Mm SINE Alu 0 147 1 1 1644 181 0 54 81 chr1 138915371 138915385 -58280047 + (TTTA)n Simple_repeat Simple_repeat 2 14 0 1 1644 1675 11 16 0 chr1 138915393 138915583 -58279849 - B2_Mm1a SINE B2 0 193 1 1 1644 1276 64 75 6 chr1 138915594 138915768 -58279664 - B2_Mm2 SINE B2 -8 187 2 1 1644 258 156 0 0 chr1 138915831 138915876 -58279556 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1 1644 218 306 32 0 chr1 138915877 138915939 -58279493 - ID4 SINE ID -19 64 1 1 1644 2038 165 80 37 chr1 138916003 138916405 -58279027 - MTC LTR MaLR 0 421 3 1 1644 729 215 74 23 chr1 138916405 138916581 -58278851 - B3A SINE B2 -13 185 1 1 1644 452 302 8 0 chr1 138916584 138916703 -58278729 - PB1D7 SINE Alu 0 120 1 1 1644 548 288 16 0 chr1 138916752 138916877 -58278555 - B1_Mur2 SINE Alu -21 128 2 1 1644 781 148 0 19 chr1 138916947 138917102 -58278330 - B1_Mur4 SINE Alu -1 149 3 1 1644 633 90 0 0 chr1 138917115 138917204 -58278228 + (TTTTC)n Simple_repeat Simple_repeat 2 90 0 1 1644 240 278 140 53 chr1 138917257 138917371 -58278061 - L1ME1 LINE L1 -143 6036 5913 1 1644 270 235 37 64 chr1 138917535 138917644 -58277788 - L1MEd LINE L1 -5119 1000 895 1 1644 423 0 0 0 chr1 138917651 138917698 -58277734 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1644 416 192 126 0 chr1 138917727 138917830 -58277602 - PB1D9 SINE Alu 0 120 6 1 1644 28 48 0 0 chr1 138917859 138917901 -58277531 + AT_rich Low_complexity Low_complexity 1 42 0 1 1644 390 100 0 0 chr1 138917947 138918007 -58277425 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1644 305 272 54 0 chr1 138918245 138918337 -58277095 + Charlie1 DNA MER1_type 102 198 -2583 1 1644 228 119 0 0 chr1 138918475 138918518 -58276914 - ID2 SINE ID -38 45 3 1 1644 364 271 75 35 chr1 138918550 138918749 -58276683 + L1M2 LINE L1 4866 5072 -1071 1 1644 708 236 6 30 chr1 138918753 138918919 -58276513 + RSINE1 SINE B4 2 163 -2 1 1644 740 144 0 57 chr1 138919012 138919152 -58276280 + B1_Mur3 SINE Alu 18 149 0 1 1644 315 209 0 139 chr1 138919169 138919291 -58276141 + MT2B LTR ERVL 160 264 -337 1 1644 979 67 0 0 chr1 138919191 138919326 -58276106 + B1_Mus2 SINE Alu 13 147 0 1 1644 783 295 106 61 chr1 138919338 138920230 -58275202 + L1PB4 LINE L1 5093 6027 -129 1 1644 992 219 0 14 chr1 138920458 138920676 -58274756 + B3 SINE B2 1 215 -1 1 1644 1366 56 5 53 chr1 138920683 138920840 -58274592 + B2_Mm2 SINE B2 2 158 -37 1 1644 186 43 0 0 chr1 138920840 138920863 -58274569 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1644 1366 56 5 53 chr1 138920863 138920893 -58274539 + B2_Mm2 SINE B2 159 180 -15 1 1644 1250 91 28 11 chr1 138921231 138921408 -58274024 - B2_Mm2 SINE B2 -14 181 2 1 1644 721 244 60 0 chr1 138921775 138921976 -58273456 - B3 SINE B2 0 216 4 1 1644 538 273 20 0 chr1 138921992 138922142 -58273290 + L1PB4 LINE L1 6345 6497 -976 1 1644 686 248 0 69 chr1 138922160 138922220 -58273212 - B1_Mur1 SINE Alu 0 149 93 1 1644 3059 35 53 5 chr1 138922220 138922598 -58272834 + MTA_Mm LTR MaLR 1 396 0 1 1644 686 248 0 69 chr1 138922598 138922697 -58272735 - B1_Mur1 SINE Alu -57 92 1 1 1644 225 0 0 0 chr1 138922705 138922730 -58272702 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 1 1644 297 75 0 0 chr1 138922753 138922793 -58272639 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1644 7337 71 38 1 chr1 138922836 138923910 -58271522 - L1Md_F2 LINE L1 0 6582 5489 1 1644 267 83 33 16 chr1 138923922 138923983 -58271449 + (TTG)n Simple_repeat Simple_repeat 1 62 0 1 1644 465 243 89 16 chr1 138923994 138924167 -58271265 - B4 SINE B4 -11 281 82 1 1644 1479 127 4 0 chr1 138924236 138924465 -58270967 + RMER6A LTR ERVK 1 230 -526 1 1644 1198 172 16 32 chr1 138924455 138924519 -58270913 - ORR1D1 LTR MaLR -126 248 185 1 1644 414 0 0 0 chr1 138924519 138924565 -58270867 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1644 324 0 0 0 chr1 138924565 138924600 -58270832 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1644 1198 172 16 32 chr1 138924600 138924786 -58270646 - ORR1D1 LTR MaLR -190 184 2 1 1644 457 291 78 12 chr1 138924808 138924975 -58270457 - L1M2 LINE L1 -523 5768 5591 1 1644 245 29 29 0 chr1 138925014 138925048 -58270384 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1644 703 207 0 80 chr1 138925055 138925218 -58270214 - B1_Mur4 SINE Alu 0 150 1 1 1644 523 252 16 8 chr1 138925531 138925655 -58269777 + ID_B1 SINE B4 93 217 -7 1 1644 333 0 0 0 chr1 138926017 138926054 -58269378 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1644 25 0 0 0 chr1 138926253 138926278 -58269154 + AT_rich Low_complexity Low_complexity 1 25 0 1 1644 1168 75 0 0 chr1 138926278 138926425 -58269007 - B1_Mus1 SINE Alu 0 148 2 1 1644 597 216 93 82 chr1 138926457 138926501 -58268931 - B3A SINE B2 0 198 165 1 1644 189 74 0 0 chr1 138926501 138926528 -58268904 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1644 597 216 93 82 chr1 138926528 138926665 -58268767 - B3A SINE B2 -34 164 15 1 1644 1226 54 0 0 chr1 138926788 138926936 -58268496 - B1_Mus1 SINE Alu 0 148 1 1 1644 180 0 0 0 chr1 138927348 138927368 -58268064 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1644 1206 68 0 0 chr1 138927368 138927515 -58267917 - B1_Mus2 SINE Alu 0 147 1 1 1644 479 296 28 14 chr1 138927639 138927783 -58267649 - RSINE1 SINE B4 -9 156 11 1 1644 400 260 9 46 chr1 138929048 138929157 -58266275 - PB1D7 SINE Alu -5 115 8 1 1644 396 0 0 0 chr1 138929570 138929614 -58265818 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1644 258 258 46 102 chr1 138929663 138929687 -58265745 + ORR1D1 LTR MaLR 229 244 -134 1 1644 553 49 25 0 chr1 138929687 138929768 -58265664 + (CCTG)n Simple_repeat Simple_repeat 4 86 0 1 1644 324 200 56 17 chr1 138929768 138929851 -58265581 + ORR1D1 LTR MaLR 244 330 -48 1 1644 603 250 12 24 chr1 138929849 138930013 -58265419 - B3A SINE B2 0 198 37 1 1644 417 198 0 82 chr1 138929986 138930096 -58265336 + ORR1D1 LTR MaLR 270 370 -4 1 1644 243 240 60 71 chr1 138930470 138930608 -58264824 - MTEb LTR MaLR -240 139 1 1 1644 504 241 64 48 chr1 138930623 138930810 -58264622 - MER53 DNA hAT -2 191 2 1 1644 232 200 108 0 chr1 138931105 138931170 -58264262 + PB1D7 SINE Alu 46 117 -3 1 1644 471 287 123 23 chr1 138931292 138931420 -58264012 - RMER5 LTR ERV1 -12 522 393 1 1644 189 0 0 0 chr1 138931420 138931441 -58263991 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 1 1644 471 287 123 23 chr1 138931441 138931572 -58263860 - RMER5 LTR ERV1 -142 392 237 1 1644 885 198 70 21 chr1 138931568 138931811 -58263621 + RLTR11A2 LTR ERVK 273 527 0 1 1644 369 0 0 0 chr1 138931830 138931871 -58263561 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1644 293 170 0 0 chr1 138931874 138931913 -58263519 + Ricksha_c DNA MuDR 867 905 -1143 1 1644 2957 188 35 17 chr1 138931913 138932491 -58262941 + MERVL_2A-int LTR ERVL 1 588 -5173 1 1644 2218 154 13 0 chr1 138932492 138932868 -58262564 + ORR1B1 LTR MaLR 1 381 -13 1 1644 5190 138 46 35 chr1 138932881 138933510 -58261922 + MERVL_2A-int LTR ERVL 584 1228 -4533 1 1644 4581 42 7 2 chr1 138933510 138934066 -58261366 + L1Md_F3 LINE L1 6025 6583 -1 1 1644 5190 138 46 35 chr1 138934066 138934332 -58261100 + MERVL_2A-int LTR ERVL 1229 1489 -4272 1 1644 2210 166 53 20 chr1 138934329 138934722 -58260710 + MERVL_2A-int LTR ERVL 1868 2273 -3488 1 1644 634 156 31 8 chr1 138934722 138934851 -58260581 + ORR1B1-int LTR MaLR 212 343 -1166 1 1644 2376 212 48 23 chr1 138934829 138935584 -58259848 + ORR1B1-int LTR MaLR 449 1359 -150 1 1644 770 167 14 27 chr1 138935596 138935744 -58259688 + B1_Mur4 SINE Alu 1 146 -4 1 1644 324 159 0 55 chr1 138935898 138935971 -58259461 - ORR1C2 LTR MaLR -303 81 13 1 1644 180 111 0 0 chr1 138935971 138935998 -58259434 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1644 1130 43 50 0 chr1 138935998 138936138 -58259294 - B1_Mm SINE Alu 0 147 1 1 1644 396 0 0 0 chr1 138936175 138936219 -58259213 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1644 529 178 0 0 chr1 138936226 138936316 -58259116 - RSINE1 SINE B4 -74 91 2 1 1645 531 0 0 0 chr1 138936693 138936752 -58258680 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1645 3185 66 12 2 chr1 138936752 138937165 -58258267 - L1_Mus1 LINE L1 -10 6557 6141 1 1645 247 212 49 29 chr1 138938119 138938175 -58257257 + (CAAAC)n Simple_repeat Simple_repeat 4 58 0 1 1645 301 22 43 0 chr1 138938175 138938221 -58257211 + (CAA)n Simple_repeat Simple_repeat 2 49 0 1 1645 247 212 49 29 chr1 138938221 138938266 -58257166 + (CAAAC)n Simple_repeat Simple_repeat 4 51 0 1 1645 212 241 0 36 chr1 138938278 138938334 -58257098 + PB1D7 SINE Alu 5 58 -62 1 1645 284 0 0 27 chr1 138938447 138938484 -58256948 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1645 542 237 88 44 chr1 138938490 138938649 -58256783 - B3A SINE B2 -32 166 1 1 1645 375 94 0 30 chr1 138938722 138938788 -58256644 - B1_Mur2 SINE Alu -1 148 85 1 1645 1034 79 65 0 chr1 138939896 138940035 -58255397 + B1_Mus1 SINE Alu 1 148 0 1 1645 321 335 59 54 chr1 138940274 138940495 -58254937 - ID_B1 SINE B4 -1 223 2 1 1645 279 275 50 0 chr1 138941296 138941376 -58254056 - Tigger7 DNA MER2_type 0 2491 2408 1 1645 1485 321 89 58 chr1 138941369 138941795 -58253637 - Tigger7 DNA MER2_type -1714 777 337 1 1645 371 286 0 0 chr1 138941795 138941872 -58253560 - ID4 SINE ID -2 81 5 1 1645 1485 321 89 58 chr1 138941872 138942019 -58253413 - Tigger7 DNA MER2_type -2155 336 200 1 1645 4753 75 42 2 chr1 138942019 138942656 -58252776 - L1Md_F2 LINE L1 0 6582 5920 1 1645 1485 321 89 58 chr1 138942656 138942825 -58252607 - Tigger7 DNA MER2_type -2292 199 11 1 1645 404 219 108 8 chr1 138943949 138944069 -58251363 - B1F1 SINE Alu -6 143 12 1 1645 369 267 62 77 chr1 138944069 138944144 -58251288 - ID_B1 SINE B4 -6 218 27 1 1645 877 162 7 20 chr1 138944546 138944697 -58250735 + B1_Mur4 SINE Alu 2 150 0 1 1645 819 182 0 0 chr1 138944698 138944863 -58250569 + GA-rich Low_complexity Low_complexity 1 165 0 1 1645 282 345 160 37 chr1 138944902 138945227 -58250205 + MLT1H1 LTR MaLR 59 423 -132 1 1645 241 125 16 82 chr1 138945650 138945711 -58249721 - B3 SINE B2 -5 211 155 1 1645 363 212 44 56 chr1 138945732 138945822 -58249610 - B3 SINE B2 -123 93 5 1 1645 264 222 82 14 chr1 138945826 138945899 -58249533 - PB1D7 SINE Alu -42 78 1 1 1645 605 218 0 31 chr1 138946278 138946406 -58249026 - B1_Mur1 SINE Alu -20 129 6 1 1645 189 0 0 0 chr1 138946713 138946734 -58248698 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1645 236 256 51 13 chr1 138947081 138947160 -58248272 - MTEa LTR MaLR -28 331 250 1 1645 333 0 0 0 chr1 138947354 138947391 -58248041 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1645 267 170 0 0 chr1 138947402 138947449 -58247983 - MTEa LTR MaLR -204 175 129 1 1645 293 231 33 0 chr1 138947657 138947748 -58247684 - B3A SINE B2 -15 183 90 1 1645 839 66 48 32 chr1 138948077 138948188 -58247244 - B1_Mus1 SINE Alu -16 132 24 1 1645 441 0 0 0 chr1 138948188 138948237 -58247195 + (CGTG)n Simple_repeat Simple_repeat 1 49 0 1 1645 839 66 48 32 chr1 138948237 138948251 -58247181 - B1_Mus1 SINE Alu -125 23 6 1 1645 218 322 56 0 chr1 138948425 138948515 -58246917 - PB1D9 SINE Alu 0 120 26 1 1645 351 144 101 194 chr1 138948519 138948648 -58246784 - ORR1D1 LTR MaLR -7 367 251 1 1645 207 0 0 0 chr1 138948654 138948677 -58246755 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1645 600 246 0 0 chr1 138948677 138948795 -58246637 - B1_Mur4 SINE Alu -32 118 1 1 1645 335 160 16 152 chr1 138948689 138948814 -58246618 - MT2B LTR ERVL -343 258 151 1 1645 1433 67 11 0 chr1 138949165 138949343 -58246089 + B2_Mm1t SINE B2 1 180 -13 1 1645 342 101 181 32 chr1 138949389 138949496 -58245936 + B2_Mm2 SINE B2 47 184 -9 1 1645 1245 58 6 17 chr1 138950149 138950325 -58245107 + B2_Mm2 SINE B2 1 174 -21 1 1645 252 311 98 8 chr1 138950566 138950689 -58244743 - MamGypLTR2 LTR Gypsy -192 997 864 1 1645 247 316 53 101 chr1 138950585 138950754 -58244678 - LTR81A LTR ERV1? -192 1158 998 1 1645 1284 91 0 39 chr1 138951213 138951233 -58244199 - B2_Mm2 SINE B2 -19 176 161 1 1645 387 0 0 0 chr1 138951233 138951276 -58244156 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1645 1284 91 0 39 chr1 138951276 138951437 -58243995 - B2_Mm2 SINE B2 -35 160 2 1 1645 1018 284 55 10 chr1 138951486 138951795 -58243637 + Lx8 LINE L1 6650 6972 -501 1 1645 1295 156 0 74 chr1 138952218 138952460 -58242972 - URR1B DNA MER1_type -1 224 1 1 1645 597 223 58 0 chr1 138952901 138953040 -58242392 - B1_Mur2 SINE Alu 0 149 3 1 1645 1320 242 108 24 chr1 138953198 138953689 -58241743 - L1MD1 LINE L1 -12 6230 5699 1 1645 207 0 0 0 chr1 138954150 138954173 -58241259 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1645 426 295 119 28 chr1 138954554 138954697 -58240735 - RSINE1 SINE B4 0 165 10 1 1645 217 253 66 13 chr1 138954790 138954866 -58240566 + ID4_ SINE ID 4 83 0 1 1645 345 289 130 15 chr1 138955525 138955725 -58239707 + RMER20B LTR ERVK 141 363 -264 1 1645 1259 122 5 0 chr1 138956452 138956641 -58238791 - B2_Mm1a SINE B2 -2 191 2 1 1645 725 238 155 0 chr1 138956815 138956983 -58238449 + B3 SINE B2 1 194 -22 1 1645 384 59 0 0 chr1 138956983 138957034 -58238398 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1645 556 161 0 11 chr1 138957446 138957540 -58237892 - PB1D10 SINE Alu -2 115 23 1 1645 999 225 75 0 chr1 138957967 138958207 -58237225 + B4A SINE B4 15 272 -20 1 1645 4471 14 0 12 chr1 138959014 138959513 -58235919 + MT2_Mm LTR ERVL 1 493 0 1 1645 41356 17 14 0 chr1 138959513 138964800 -58230632 + MERVL-int LTR ERVL 1 5360 -125 1 1645 315 202 46 35 chr1 138964800 138964887 -58230545 + ORR1A3-int LTR MaLR 553 640 -1323 1 1645 315 26 0 0 chr1 138964887 138964925 -58230507 + MERVL-int LTR ERVL 5448 5485 0 1 1645 4471 14 0 12 chr1 138964925 138965424 -58230008 + MT2_Mm LTR ERVL 1 493 0 1 1645 183 259 69 0 chr1 138966428 138966486 -58228946 + MIR3 SINE MIR 106 167 -41 1 1645 291 28 0 0 chr1 138966576 138966612 -58228820 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1645 802 254 11 5 chr1 138966784 138966970 -58228462 + B3 SINE B2 25 211 -5 1 1645 260 336 0 26 chr1 138967325 138967441 -58227991 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 1 1645 321 259 389 85 chr1 138967456 138967502 -58227930 - B4A SINE B4 -16 276 231 1 1645 278 50 0 24 chr1 138967502 138967543 -58227889 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1 1645 321 259 389 85 chr1 138967543 138967707 -58227725 - B4A SINE B4 -62 230 4 1 1645 282 214 9 109 chr1 138967717 138967755 -58227677 + MT2B LTR ERVL 142 176 -425 1 1645 198 0 0 0 chr1 138967755 138967777 -58227655 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 1 1645 282 214 9 109 chr1 138967777 138967848 -58227584 + MT2B LTR ERVL 177 240 -361 1 1645 549 179 116 0 chr1 138967848 138967889 -58227543 + B1_Mm SINE Alu 13 137 -10 1 1645 252 0 0 0 chr1 138967889 138967917 -58227515 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1645 720 136 35 15 chr1 138969110 138969311 -58226121 + RMER17A2 LTR ERVK 309 513 -393 1 1645 263 283 56 19 chr1 138969666 138969774 -58225658 - PB1D7 SINE Alu -8 112 1 1 1645 201 39 0 0 chr1 138969789 138969815 -58225617 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1645 315 182 0 70 chr1 138970210 138970281 -58225151 + ID4_ SINE ID 17 82 -1 1 1645 227 152 22 0 chr1 138971794 138971840 -58223592 + CT-rich Low_complexity Low_complexity 2 48 0 1 1645 532 311 96 53 chr1 138973236 138973538 -58221894 + MER44C DNA MER2_type 31 345 -388 1 1645 1160 105 43 37 chr1 138973903 138974091 -58221341 + B2_Mm2 SINE B2 1 189 -6 1 1645 477 0 0 0 chr1 138974112 138974165 -58221267 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1645 411 323 38 0 chr1 138974165 138974298 -58221134 - RSINE1 SINE B4 -13 152 15 1 1645 378 272 87 0 chr1 138974765 138974868 -58220564 - PB1D10 SINE Alu -1 116 5 1 1645 1047 89 0 66 chr1 138974908 138975089 -58220343 + B2_Mm2 SINE B2 2 170 -25 1 1645 369 0 0 0 chr1 138975361 138975402 -58220030 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1645 407 269 8 25 chr1 138977200 138977318 -58218114 + PB1D10 SINE Alu 1 116 -1 1 1645 350 134 15 0 chr1 138977318 138977385 -58218047 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1645 197 83 0 27 chr1 138977398 138977435 -58217997 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1645 180 0 0 0 chr1 138977472 138977492 -58217940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1645 1131 43 14 0 chr1 138977498 138977636 -58217796 - B1_Mus2 SINE Alu -7 140 1 1 1645 261 0 0 0 chr1 138978082 138978111 -58217321 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1645 354 192 51 13 chr1 138978111 138978180 -58217252 - B1_Mur2 SINE Alu -13 136 64 1 1645 441 0 0 0 chr1 138978184 138978233 -58217199 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1645 773 181 0 0 chr1 138978234 138978367 -58217065 - B3 SINE B2 -83 133 1 1 1645 748 268 38 17 chr1 138978367 138978602 -58216830 - L1MB3 LINE L1 -44 6139 5900 1 1645 787 127 49 14 chr1 138978687 138978831 -58216601 + URR1A DNA MER1_type 77 225 -1 1 1645 830 270 5 48 chr1 138978928 138979138 -58216294 + B3 SINE B2 3 203 -13 1 1645 234 91 0 0 chr1 138979138 138979171 -58216261 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1645 440 318 0 23 chr1 138979465 138979594 -58215838 + B1F1 SINE Alu 13 138 -11 1 1645 326 291 103 11 chr1 138979771 138979945 -58215487 - MLT1C LTR MaLR -21 446 257 1 1645 262 237 26 26 chr1 138980414 138980492 -58214940 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 1 1645 449 283 122 39 chr1 138980919 138981099 -58214333 + B3A SINE B2 4 198 0 1 1645 270 0 0 0 chr1 138981131 138981161 -58214271 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1645 222 204 0 22 chr1 138981243 138981288 -58214144 + CT-rich Low_complexity Low_complexity 3 46 0 1 1645 195 114 0 0 chr1 138981692 138981727 -58213705 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1645 277 122 20 0 chr1 138982062 138982111 -58213321 + Lx7 LINE L1 7647 7696 0 1 1645 608 307 173 17 chr1 138983427 138983785 -58211647 + Lx8 LINE L1 7060 7473 0 1 1645 646 250 0 20 chr1 138983806 138983953 -58211479 + B1_Mur1 SINE Alu 6 149 0 1 1645 294 237 0 38 chr1 138984126 138984205 -58211227 - MLT1A1 LTR MaLR -12 396 321 1 1645 414 0 0 0 chr1 138984235 138984281 -58211151 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1645 251 320 13 0 chr1 138984281 138984356 -58211076 - PB1D10 SINE Alu 0 117 42 1 1645 206 174 22 0 chr1 138985625 138985671 -58209761 + GA-rich Low_complexity Low_complexity 3 49 0 1 1645 548 303 14 0 chr1 138985702 138985844 -58209588 + ID_B1 SINE B4 81 224 0 1 1645 206 174 22 0 chr1 138985844 138985890 -58209542 + GA-rich Low_complexity Low_complexity 1 47 0 1 1645 465 250 8 33 chr1 138986291 138986411 -58209021 - PB1D10 SINE Alu 0 117 1 1 1645 684 171 167 28 chr1 138986464 138986644 -58208788 - B3 SINE B2 -11 205 1 1 1645 1235 286 76 73 chr1 138986644 138986724 -58208708 - L1MD1 LINE L1 -4 6238 6170 1 1645 866 214 5 39 chr1 138986724 138986928 -58208504 - B3A SINE B2 0 198 2 1 1645 1235 267 85 67 chr1 138986928 138987614 -58207818 - L1MD1 LINE L1 -73 6169 5463 1 1645 255 61 0 0 chr1 138987616 138987649 -58207783 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1645 522 291 0 29 chr1 138987671 138987809 -58207623 - B1F2 SINE Alu -14 135 2 1 1645 336 200 0 0 chr1 138987822 138987892 -58207540 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1645 722 314 65 11 chr1 138987894 138988171 -58207261 - B4A SINE B4 0 292 1 1 1645 250 233 221 10 chr1 138988328 138988432 -58207000 - RSINE1 SINE B4 -37 128 3 1 1645 284 323 69 6 chr1 138988441 138988600 -58206832 - L1MD LINE L1 -1829 4317 4149 1 1645 227 289 48 0 chr1 138989475 138989558 -58205874 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 1 1645 255 133 0 0 chr1 138989972 138990017 -58205415 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1645 2871 62 3 3 chr1 138990088 138990458 -58204974 - L1Md_A LINE L1 -1 6581 6212 1 1645 313 368 0 0 chr1 138990473 138990606 -58204826 + L1M2 LINE L1 4762 4894 -1249 1 1645 986 296 47 10 chr1 138990636 138990936 -58204496 - Lx8 LINE L1 -802 6671 6361 1 1645 369 310 26 9 chr1 138990910 138991024 -58204408 + Lx8 LINE L1 6652 6767 -706 1 1645 625 231 60 0 chr1 138991030 138991164 -58204268 - B1_Mus2 SINE Alu -5 142 1 1 1645 340 319 17 0 chr1 138991164 138991283 -58204149 + Lx7 LINE L1 6758 6878 -818 1 1645 1491 175 66 91 chr1 138991393 138991757 -58203675 + Lx5 LINE L1 6696 7050 0 1 1645 675 37 0 0 chr1 138992524 138992606 -58202826 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1645 183 129 0 0 chr1 138992680 138992711 -58202721 + (TAGGG)n Simple_repeat Simple_repeat 3 33 0 1 1645 252 322 0 11 chr1 138992931 138993022 -58202410 - L2 LINE L2 -907 2512 2423 1 1645 195 42 0 0 chr1 138993040 138993064 -58202368 + (TTAG)n Simple_repeat Simple_repeat 2 25 0 1 1645 881 123 0 23 chr1 138993076 138993209 -58202223 - B1_Mur2 SINE Alu -2 147 18 1 1645 204 356 70 0 chr1 138993716 138993831 -58201601 - MIRb SINE MIR -122 146 24 1 1645 509 256 52 8 chr1 138993871 138994005 -58201427 - B1F SINE Alu -6 143 4 1 1645 788 155 40 53 chr1 138994255 138994405 -58201027 - B1_Mur4 SINE Alu -1 149 2 1 1645 1214 149 13 40 chr1 138994406 138994630 -58200802 - MTC LTR MaLR -5 416 199 1 1645 935 79 0 38 chr1 138994636 138994852 -58200580 + (CCTTG)n Simple_repeat Simple_repeat 1 207 0 1 1645 519 60 0 0 chr1 138994852 138994919 -58200513 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1 1645 379 113 14 14 chr1 138994921 138994993 -58200439 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 1 1645 1046 83 21 0 chr1 138994999 138995144 -58200288 - B1_Mus1 SINE Alu 0 148 1 1 1645 975 140 64 45 chr1 138995147 138995349 -58200083 - MTC LTR MaLR -215 206 1 1 1645 29 0 0 0 chr1 138996682 138996711 -58198721 + AT_rich Low_complexity Low_complexity 1 29 0 1 1645 261 0 0 0 chr1 138996779 138996808 -58198624 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1645 1194 211 155 0 chr1 138997262 138997606 -58197826 - MTD LTR MaLR -14 405 20 1 1645 522 0 0 0 chr1 138997975 138998033 -58197399 + (GGGAA)n Simple_repeat Simple_repeat 2 59 0 1 1645 189 74 0 0 chr1 138998298 138998325 -58197107 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1645 734 207 0 22 chr1 138998329 138998467 -58196965 - B1_Mur3 SINE Alu -14 135 1 1 1645 194 245 23 16 chr1 138998724 138998786 -58196646 + L2b LINE L2 3321 3387 0 1 1645 405 0 0 0 chr1 138999938 138999983 -58195449 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1645 261 83 0 0 chr1 139000733 139000769 -58194663 + (TTC)n Simple_repeat Simple_repeat 1 36 0 1 1645 29 0 0 0 chr1 139000978 139001007 -58194425 + AT_rich Low_complexity Low_complexity 1 29 0 2 1645 874 153 0 14 chr1 139001133 139001279 -58194153 + B1_Mur3 SINE Alu 1 144 -5 3 1645 266 374 12 12 chr1 139001838 139001998 -58193434 - L2 LINE L2 -648 2771 2612 4 1645 193 289 48 12 chr1 139002532 139002616 -58192816 - L2 LINE L2 -1229 2190 2104 4 1645 251 331 95 6 chr1 139002984 139003142 -58192290 - MIR SINE MIR -68 194 23 5 1645 194 324 14 14 chr1 139003166 139003235 -58192197 + MIRb SINE MIR 38 106 -162 6 1645 1265 52 55 44 chr1 139003408 139003590 -58191842 + B2_Mm2 SINE B2 4 187 -8 7 1645 568 53 0 0 chr1 139003933 139004009 -58191423 + BC1_Mm scRNA scRNA 1 76 -76 8 1645 273 57 0 0 chr1 139004010 139004045 -58191387 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1645 216 301 13 40 chr1 139004276 139004352 -58191080 + B4A SINE B4 50 123 -169 1 1645 24 0 0 0 chr1 139005462 139005486 -58189946 + AT_rich Low_complexity Low_complexity 1 24 0 1 1645 680 245 53 26 chr1 139005981 139006245 -58189187 - L1MA6 LINE L1 -3 6297 6027 1 1645 38 22 0 0 chr1 139006912 139006957 -58188475 + AT_rich Low_complexity Low_complexity 1 45 0 1 1645 338 212 15 15 chr1 139007044 139007111 -58188321 - ID4_ SINE ID -12 71 5 1 1645 613 167 0 17 chr1 139007331 139007447 -58187985 - PB1D9 SINE Alu -2 118 5 1 1645 180 283 19 0 chr1 139007704 139007757 -58187675 + MIR3 SINE MIR 125 178 -30 1 1645 186 43 0 0 chr1 139008490 139008513 -58186919 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1645 1401 90 21 0 chr1 139008800 139008989 -58186443 - B2_Mm2 SINE B2 -2 193 1 1 1645 704 179 138 25 chr1 139009701 139009861 -58185571 + URR1B DNA MER1_type 2 179 -46 1 1645 863 208 330 40 chr1 139009854 139010147 -58185285 + MTD LTR MaLR 28 405 -14 2 1645 365 348 47 39 chr1 139011364 139011597 -58183835 + MIRb SINE MIR 26 260 -8 2 1645 245 29 29 0 chr1 139013182 139013216 -58182216 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1645 472 249 73 30 chr1 139013580 139013777 -58181655 - L1MA7 LINE L1 -271 6029 5820 2 1645 468 228 231 44 chr1 139013832 139014061 -58181371 - B4A SINE B4 -17 275 4 2 1645 243 222 63 0 chr1 139014064 139014127 -58181305 - L1MA7 LINE L1 -482 5830 5764 2 1645 888 252 15 0 chr1 139014520 139014718 -58180714 + B3 SINE B2 5 205 -11 2 1645 9815 176 50 21 chr1 139014854 139017348 -58178084 - Lx7 LINE L1 -1136 6560 3993 2 1645 7518 133 34 38 chr1 139017348 139018781 -58176651 - Lx7 LINE L1 -3177 2703 1276 2 1645 4136 195 52 48 chr1 139018794 139019379 -58176053 - Lx7 LINE L1 -6555 1173 562 2 1645 3852 207 55 56 chr1 139019379 139020284 -58175148 + RMER13B LTR ERVK 5 908 0 2 1645 4136 195 52 48 chr1 139020284 139020619 -58174813 - Lx7 LINE L1 -7167 561 249 2 1645 240 345 18 18 chr1 139020785 139020897 -58174535 - Charlie2b DNA MER1_type -589 2193 2082 2 1645 310 337 117 0 chr1 139021259 139021508 -58173924 - Charlie2b DNA MER1_type -2427 355 78 2 1645 738 190 227 0 chr1 139021615 139021778 -58173654 - B3 SINE B2 -13 203 4 2 1645 2575 226 120 38 chr1 139021920 139022585 -58172847 + Lx7 LINE L1 6804 7510 -186 3 1645 1288 113 11 5 chr1 139022585 139022771 -58172661 - B2_Mm2 SINE B2 -4 191 5 3 1645 2575 226 120 38 chr1 139022771 139022930 -58172502 + Lx7 LINE L1 7511 7695 -1 3 1645 407 276 60 59 chr1 139023876 139024211 -58171221 - MTEa LTR MaLR -3 376 22 3 1645 655 306 111 37 chr1 139024415 139024686 -58170746 - B4 SINE B4 0 292 2 3 1645 252 0 0 0 chr1 139024721 139024749 -58170683 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1645 1260 124 70 23 chr1 139024757 139024888 -58170544 - URR1B DNA MER1_type 0 225 98 3 1645 540 0 0 0 chr1 139024888 139024948 -58170484 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1645 1260 124 70 23 chr1 139024948 139025031 -58170401 - URR1B DNA MER1_type -128 97 2 3 1645 231 300 117 35 chr1 139025237 139025382 -58170050 + MIR SINE MIR 56 212 -50 3 1645 350 305 56 35 chr1 139028048 139028337 -58167095 - L1_Mus4 LINE L1 -6 6438 6111 3 1645 261 83 0 0 chr1 139028394 139028430 -58167002 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1645 999 247 33 12 chr1 139028450 139028692 -58166740 - B4A SINE B4 -43 249 3 4 1645 476 219 60 14 chr1 139028875 139029038 -58166394 - L1_Mus4 LINE L1 -839 5797 5654 3 1645 614 250 68 0 chr1 139029991 139030123 -58165309 - RSINE1 SINE B4 -23 142 2 4 1645 288 0 0 0 chr1 139030153 139030185 -58165247 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1645 1242 151 9 56 chr1 139031858 139032090 -58163342 + URR1B DNA MER1_type 1 221 -4 4 1645 194 143 0 20 chr1 139032565 139032615 -58162817 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 4 1645 955 317 32 37 chr1 139032639 139033294 -58162138 - L1MA4A LINE L1 -362 5941 5290 4 1645 2164 229 112 4 chr1 139033323 139033874 -58161558 - Lx6 LINE L1 -11 7449 6839 4 1645 415 209 69 8 chr1 139033875 139033997 -58161435 - L1MA4A LINE L1 -873 5270 5084 4 1645 477 0 0 0 chr1 139033997 139034050 -58161382 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 4 1645 314 250 81 7 chr1 139034050 139034077 -58161355 - L1MA4A LINE L1 -1002 5141 5111 4 1645 926 78 0 8 chr1 139034103 139034233 -58161199 - B2_Mm2 SINE B2 -66 129 1 4 1645 454 266 122 86 chr1 139034275 139034497 -58160935 - L1MA4A LINE L1 -1036 5107 4878 4 1645 479 261 9 18 chr1 139034580 139034693 -58160739 + PB1D10 SINE Alu 4 115 -2 4 1645 332 277 8 8 chr1 139034766 139034895 -58160537 - L1MA6 LINE L1 -79 6221 6093 5 1645 4181 84 31 2 chr1 139034923 139035494 -58159938 - L1_Mus4 LINE L1 -8 6628 6041 5 1645 21 0 0 0 chr1 139035621 139035642 -58159790 + AT_rich Low_complexity Low_complexity 1 21 0 5 1645 207 0 0 0 chr1 139035755 139035778 -58159654 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1645 663 168 8 8 chr1 139036501 139036633 -58158799 - Lx9 LINE L1 -4 7640 7509 5 1645 516 32 0 0 chr1 139036635 139036697 -58158735 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1645 2098 178 122 27 chr1 139036699 139037174 -58158258 - Lx9 LINE L1 -179 7465 6946 5 1645 611 231 78 171 chr1 139037179 139037372 -58158060 + B3A SINE B2 15 189 -6 5 1645 906 284 48 29 chr1 139037966 139038281 -58157151 - Lx8 LINE L1 -354 7119 6799 5 1645 336 59 69 0 chr1 139039483 139039594 -58155838 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 5 1645 402 74 0 0 chr1 139039605 139039659 -58155773 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1645 271 289 67 62 chr1 139039859 139040069 -58155363 - MTEa LTR MaLR 0 379 169 6 1645 2468 126 71 3 chr1 139040699 139041080 -58154352 + MTB_Mm LTR MaLR 1 407 0 6 1645 484 162 126 0 chr1 139041241 139041352 -58154080 - ORR1D1 LTR MaLR -79 295 171 6 1645 628 313 0 43 chr1 139041425 139041632 -58153800 - B3A SINE B2 0 198 1 6 1645 371 273 35 41 chr1 139042409 139042554 -58152878 - MER2 DNA MER2_type -63 282 139 6 1645 1635 129 96 52 chr1 139042820 139042864 -58152568 - ORR1B2 LTR MaLR -8 359 323 6 1645 1173 128 10 31 chr1 139042864 139043058 -58152374 - B2_Mm2 SINE B2 -5 190 1 6 1645 1635 129 96 52 chr1 139043058 139043357 -58152075 - ORR1B2 LTR MaLR -45 322 1 6 1645 1285 168 166 115 chr1 139043907 139044263 -58151169 - ORR1D1 LTR MaLR 0 374 1 6 1645 1178 166 123 21 chr1 139044263 139044547 -58150885 - ORR1D1-int LTR MaLR -5 1365 1053 6 1645 2118 238 122 22 chr1 139045010 139045968 -58149464 - ORR1D1-int LTR MaLR -315 1055 3 6 1645 935 153 106 98 chr1 139045968 139046212 -58149220 - ORR1D1 LTR MaLR -24 360 115 6 1645 42092 6 0 1 chr1 139046222 139053012 -58142420 - L1Md_A LINE L1 0 6582 1 6 1645 344 164 44 266 chr1 139053013 139053171 -58142261 - ORR1D1 LTR MaLR -251 123 1 6 1645 489 290 28 124 chr1 139053276 139053599 -58141833 - ORR1E LTR MaLR -19 340 49 6 1645 821 268 14 0 chr1 139053822 139054035 -58141397 - B3 SINE B2 0 216 1 7 1645 26 50 0 0 chr1 139054340 139054380 -58141052 + AT_rich Low_complexity Low_complexity 1 40 0 7 1645 358 262 140 102 chr1 139054381 139054538 -58140894 - RSINE1 SINE B4 0 165 3 7 1645 451 288 61 14 chr1 139054625 139054773 -58140659 + ORR1D2 LTR MaLR 8 162 -208 7 1645 309 287 63 39 chr1 139054874 139055001 -58140431 + RSINE1 SINE B4 3 132 -33 7 1645 270 0 0 0 chr1 139055024 139055054 -58140378 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1645 2026 99 77 15 chr1 139055523 139055861 -58139571 - ORR1B2 LTR MaLR -8 359 1 7 1645 272 290 20 10 chr1 139056086 139056187 -58139245 - L1MB4 LINE L1 -218 5962 5861 7 1645 2497 96 3 59 chr1 139056187 139056574 -58138858 + RLTR8 LTR ERVK 1 365 0 7 1645 234 265 127 40 chr1 139056659 139056832 -58138600 - L1MB4 LINE L1 -445 5729 5542 7 1645 257 279 0 0 chr1 139056880 139056948 -58138484 + CT-rich Low_complexity Low_complexity 1 68 0 7 1645 551 232 53 46 chr1 139056970 139057139 -58138293 - L1MB4 LINE L1 -691 5487 5317 7 1645 405 305 68 0 chr1 139057289 139057407 -58138025 - ID_B1 SINE B4 0 224 99 8 1645 689 183 77 7 chr1 139057411 139057554 -58137878 + B3 SINE B2 1 153 -63 8 1645 440 35 0 17 chr1 139057554 139057613 -58137819 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1645 228 298 106 16 chr1 139057766 139057889 -58137543 - MIRc SINE MIR -52 216 83 8 1645 24 0 0 0 chr1 139058123 139058147 -58137285 + AT_rich Low_complexity Low_complexity 1 24 0 8 1645 306 205 0 0 chr1 139059233 139059311 -58136121 + GA-rich Low_complexity Low_complexity 1 78 0 8 1645 231 36 0 0 chr1 139060779 139060807 -58134625 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1645 1237 14 0 0 chr1 139061779 139061917 -58133515 + B1_Mm SINE Alu 1 138 -9 8 1645 633 14 0 0 chr1 139061917 139061991 -58133441 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 8 1645 440 239 79 9 chr1 139062064 139062178 -58133254 - B1_Mur2 SINE Alu -1 148 27 8 1645 356 296 28 0 chr1 139062197 139062305 -58133127 - B1F1 SINE Alu 0 149 39 9 1645 1790 173 44 25 chr1 139062309 139062670 -58132762 - ORR1C1 LTR MaLR -10 368 1 9 1645 282 296 100 64 chr1 139064803 139065023 -58130409 + MLT-int LTR MaLR 533 760 -975 9 1645 410 295 71 24 chr1 139065432 139065644 -58129788 + MTE-int LTR MaLR 1323 1544 -36 9 1645 691 194 217 0 chr1 139066168 139066348 -58129084 - MTD LTR MaLR 0 419 201 9 1645 230 162 0 0 chr1 139066344 139066381 -58129051 - B1_Mur4 SINE Alu -113 37 1 9 1645 1215 102 0 0 chr1 139066392 139066569 -58128863 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 9 1645 714 82 0 0 chr1 139066576 139066674 -58128758 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 9 1645 955 225 14 9 chr1 139066760 139066971 -58128461 - MTD LTR MaLR -207 212 1 9 1646 588 29 0 0 chr1 139068363 139068433 -58126999 + (TC)n Simple_repeat Simple_repeat 2 71 0 9 1646 315 0 0 0 chr1 139069741 139069776 -58125656 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1646 21 36 0 0 chr1 139069997 139070025 -58125407 + AT_rich Low_complexity Low_complexity 1 28 0 1 1646 248 242 0 29 chr1 139071546 139071614 -58123818 - MLT1A1 LTR MaLR -38 370 305 1 1646 1181 147 34 84 chr1 139071697 139071935 -58123497 - URR1A DNA MER1_type 0 226 1 1 1646 588 227 16 74 chr1 139072311 139072501 -58122931 - B3A SINE B2 -17 181 3 1 1646 298 308 14 43 chr1 139074594 139074733 -58120699 - L2b LINE L2 0 3375 3241 1 1646 254 29 29 0 chr1 139074850 139074885 -58120547 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1646 584 264 104 86 chr1 139074907 139075110 -58120322 + MTE2a LTR MaLR 4 200 -179 1 1646 183 42 0 0 chr1 139075110 139075134 -58120298 + (CATG)n Simple_repeat Simple_repeat 4 27 0 1 1646 584 264 104 86 chr1 139075134 139075257 -58120175 + MTE2a LTR MaLR 201 335 -44 1 1646 330 240 167 0 chr1 139075323 139075419 -58120013 - ID_B1 SINE B4 -9 215 104 1 1646 217 328 0 0 chr1 139076062 139076123 -58119309 - L2b LINE L2 -1101 2318 2258 1 1646 199 258 32 0 chr1 139076453 139076515 -58118917 + L2c LINE L2 3092 3155 -232 1 1646 252 167 0 0 chr1 139076872 139076920 -58118512 + GA-rich Low_complexity Low_complexity 5 52 0 1 1646 300 226 52 113 chr1 139077000 139077027 -58118405 + MT2B LTR ERVL 135 154 -447 1 1646 533 159 21 2 chr1 139077027 139077138 -58118294 + B1_Mur4 SINE Alu 1 120 0 1 1646 22 0 0 0 chr1 139077187 139077209 -58118223 + AT_rich Low_complexity Low_complexity 1 22 0 1 1646 933 37 7 15 chr1 139077307 139077443 -58117989 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 1 1646 372 22 0 0 chr1 139078244 139078289 -58117143 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1646 291 368 42 30 chr1 139078341 139078509 -58116923 - B4 SINE B4 -122 170 1 1 1646 302 300 0 48 chr1 139080228 139080333 -58115099 + PB1D10 SINE Alu 2 101 -16 1 1646 288 53 0 0 chr1 139080334 139080372 -58115060 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 1646 5208 235 55 18 chr1 139080398 139080525 -58114907 - Lx9 LINE L1 0 7644 7510 1 1646 956 117 0 11 chr1 139080525 139080707 -58114725 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1646 5208 235 55 18 chr1 139080707 139081873 -58113559 - Lx9 LINE L1 -135 7509 6303 1 1646 345 24 0 0 chr1 139082631 139082673 -58112759 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1646 225 0 0 0 chr1 139083796 139083821 -58111611 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1646 1312 195 116 59 chr1 139083831 139084185 -58111247 - ORR1D1 LTR MaLR 0 374 1 1 1646 253 259 136 62 chr1 139084524 139084597 -58110835 - L1MD LINE L1 -790 5569 5488 1 1646 258 32 0 0 chr1 139084597 139084628 -58110804 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1646 253 259 136 62 chr1 139084628 139084731 -58110701 - L1MD LINE L1 -872 5487 5381 1 1646 348 24 0 0 chr1 139084781 139084822 -58110610 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1646 306 0 0 0 chr1 139084822 139084855 -58110577 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1646 432 313 69 29 chr1 139084998 139085274 -58110158 - B4A SINE B4 -5 287 1 1 1646 396 253 219 22 chr1 139085829 139086008 -58109424 - B3A SINE B2 -13 203 2 1 1646 459 249 92 66 chr1 139086032 139086077 -58109355 - L1MA8 LINE L1 -1 6290 6249 1 1646 2735 176 41 2 chr1 139086077 139086585 -58108847 + MT2A LTR ERVL 3 530 -3 1 1646 459 249 92 66 chr1 139086585 139086767 -58108665 - L1MA8 LINE L1 -43 6248 6057 1 1646 1302 20 0 0 chr1 139086901 139087047 -58108385 - B1_Mm SINE Alu -1 146 1 1 1646 1178 48 7 0 chr1 139087687 139087833 -58107599 + B1_Mus2 SINE Alu 1 147 0 1 1646 1441 73 5 5 chr1 139087853 139088045 -58107387 + B2_Mm2 SINE B2 1 192 -3 1 1646 207 200 0 0 chr1 139088058 139088103 -58107329 + T-rich Low_complexity Low_complexity 1 45 0 1 1646 324 0 0 0 chr1 139088266 139088302 -58107130 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1646 35 0 0 0 chr1 139088525 139088560 -58106872 + AT_rich Low_complexity Low_complexity 1 35 0 1 1646 6104 54 0 5 chr1 139088560 139089306 -58106126 - L1Md_F2 LINE L1 0 6582 5841 1 1646 405 299 47 30 chr1 139089342 139089511 -58105921 - B3A SINE B2 -10 188 17 1 1646 303 267 17 69 chr1 139089571 139089744 -58105688 - L1M7 LINE L1 -5431 787 624 1 1646 1574 176 29 77 chr1 139092553 139092929 -58102503 + ORR1C1 LTR MaLR 19 376 -2 1 1646 324 0 0 0 chr1 139094042 139094078 -58101354 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1646 21 57 0 0 chr1 139094889 139094924 -58100508 + AT_rich Low_complexity Low_complexity 1 35 0 1 1646 524 176 8 0 chr1 139094994 139095125 -58100307 + (TG)n Simple_repeat Simple_repeat 2 133 0 1 1646 762 99 0 0 chr1 139095126 139095257 -58100175 + (TC)n Simple_repeat Simple_repeat 2 132 0 1 1646 270 0 0 0 chr1 139095257 139095286 -58100146 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1646 288 0 0 0 chr1 139096189 139096221 -58099211 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1646 1140 97 0 0 chr1 139096221 139096366 -58099066 - B1_Mus1 SINE Alu -2 146 2 1 1646 682 246 81 16 chr1 139096590 139096610 -58098822 - B3A SINE B2 0 198 180 1 1646 365 55 36 0 chr1 139096610 139096665 -58098767 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1646 682 246 81 16 chr1 139096665 139096830 -58098602 - B3A SINE B2 -19 179 3 1 1646 243 88 0 0 chr1 139097096 139097130 -58098302 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1646 1389 149 64 43 chr1 139097196 139097477 -58097955 - MTC LTR MaLR -110 311 25 1 1646 357 62 0 0 chr1 139099473 139099521 -58095911 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1646 399 68 0 0 chr1 139099563 139099622 -58095810 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 1 1646 544 298 45 56 chr1 139100346 139100613 -58094819 - Lx8 LINE L1 -399 7074 6811 1 1646 211 337 91 23 chr1 139102203 139102379 -58093053 + MIRb SINE MIR 45 232 -36 1 1646 920 26 0 0 chr1 139104265 139104382 -58091050 + B1_Mm SINE Alu 2 118 -29 1 1646 268 333 25 25 chr1 139104389 139104509 -58090923 + PB1 SINE Alu 8 127 0 1 1646 805 212 27 27 chr1 139105254 139105438 -58089994 + B3 SINE B2 14 197 -19 1 1646 198 0 0 0 chr1 139105440 139105462 -58089970 + (CATA)n Simple_repeat Simple_repeat 2 23 0 1 1646 2236 45 0 0 chr1 139105470 139105736 -58089696 + L1Md_T LINE L1 6317 6582 0 1 1646 1203 71 101 0 chr1 139105964 139106133 -58089299 - B2_Mm2 SINE B2 -8 187 2 1 1646 303 270 144 61 chr1 139106760 139107105 -58088327 - L1MC LINE L1 -1201 4945 4567 1 1646 252 203 62 0 chr1 139107269 139107333 -58088099 - L1MC LINE L1 -1598 4548 4481 1 1646 24 32 0 0 chr1 139107350 139107381 -58088051 + AT_rich Low_complexity Low_complexity 1 31 0 1 1646 230 191 59 0 chr1 139107384 139107452 -58087980 - L1MC LINE L1 -2132 4014 3943 1 1646 496 241 101 34 chr1 139107569 139107780 -58087652 + L1PB4 LINE L1 5664 5964 -192 1 1646 1011 100 0 0 chr1 139108560 139108710 -58086722 + (TCCC)n Simple_repeat Simple_repeat 2 151 0 1 1646 338 261 54 11 chr1 139108811 139108904 -58086528 - RSINE1 SINE B4 0 165 69 1 1646 425 246 8 41 chr1 139109312 139109435 -58085997 - PB1D7 SINE Alu 0 120 2 1 1646 25 31 0 0 chr1 139109936 139109968 -58085464 + AT_rich Low_complexity Low_complexity 1 32 0 1 1646 5281 51 114 21 chr1 139110860 139111581 -58083851 + L1_Mus3 LINE L1 5848 6635 -3 1 1646 555 118 0 0 chr1 139112022 139112107 -58083325 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 1 1646 554 186 20 0 chr1 139112122 139112224 -58083208 - U6 snRNA snRNA -2 105 2 1 1646 331 226 71 0 chr1 139112750 139112834 -58082598 - B1F1 SINE Alu -51 98 9 1 1646 289 306 26 35 chr1 139112834 139112865 -58082567 - ID_B1 SINE B4 -48 176 63 1 1646 216 0 0 0 chr1 139113128 139113152 -58082280 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1646 4484 91 15 36 chr1 139113623 139114237 -58081195 - MT2B LTR ERVL 0 601 1 1 1646 2423 160 36 26 chr1 139114345 139114762 -58080670 + MTC LTR MaLR 1 421 0 1 1646 924 234 38 24 chr1 139114783 139114993 -58080439 - B3 SINE B2 -3 213 1 1 1646 465 250 222 12 chr1 139115891 139116053 -58079379 - B3A SINE B2 -1 197 2 1 1646 309 89 0 0 chr1 139116611 139116656 -58078776 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1646 216 163 0 0 chr1 139117225 139117268 -58078164 + G-rich Low_complexity Low_complexity 3 45 0 1 1646 323 327 35 23 chr1 139117268 139117440 -58077992 - MER74B LTR ERVL -142 480 307 1 1646 303 266 57 74 chr1 139117428 139117550 -58077882 - MER74B LTR ERVL -451 171 52 1 1646 255 299 188 8 chr1 139117575 139117703 -58077729 - MIRb SINE MIR -86 182 28 1 1646 213 39 0 0 chr1 139118027 139118053 -58077379 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1646 229 282 99 66 chr1 139119365 139119517 -58075915 + MIRb SINE MIR 42 198 -70 1 1646 204 125 0 0 chr1 139120015 139120047 -58075385 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1646 339 44 0 0 chr1 139121069 139121114 -58074318 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1646 229 194 0 0 chr1 139122262 139122298 -58073134 + MER20 DNA MER1_type 97 132 -87 1 1646 387 0 0 0 chr1 139122922 139122965 -58072467 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1646 1144 178 39 24 chr1 139123159 139123366 -58072066 - B3 SINE B2 0 216 7 1 1646 618 229 118 16 chr1 139123404 139123590 -58071842 - B3 SINE B2 0 216 12 1 1646 21 0 0 0 chr1 139124097 139124118 -58071314 + AT_rich Low_complexity Low_complexity 1 21 0 1 1646 302 329 81 58 chr1 139124203 139124377 -58071055 - L1ME2 LINE L1 -196 5968 5791 1 1646 295 268 50 130 chr1 139125442 139125819 -58069613 - L1MC4 LINE L1 -4734 1481 1135 1 1646 610 194 29 0 chr1 139125808 139125947 -58069485 - Lx9 LINE L1 0 7644 7502 1 1646 195 338 106 14 chr1 139126186 139126327 -58069105 + MIRb SINE MIR 35 188 -80 1 1646 6004 233 42 8 chr1 139126490 139127901 -58067531 + Lx7 LINE L1 5489 6945 -751 1 1646 502 357 13 13 chr1 139128089 139128245 -58067187 + B4A SINE B4 131 286 -6 1 1646 854 253 72 30 chr1 139128463 139128728 -58066704 - B4A SINE B4 -16 276 1 2 1646 368 258 11 21 chr1 139128749 139128844 -58066588 + MTE2a LTR MaLR 286 379 0 2 1646 434 184 7 88 chr1 139128875 139129012 -58066420 - Lx9 LINE L1 -1 7643 7518 2 1646 557 52 13 0 chr1 139129018 139129095 -58066337 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1646 336 164 33 0 chr1 139129098 139129159 -58066273 - Lx9 LINE L1 -179 7465 7403 2 1646 53 40 0 0 chr1 139129393 139129467 -58065965 + AT_rich Low_complexity Low_complexity 1 74 0 2 1646 270 0 0 0 chr1 139129474 139129504 -58065928 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1646 728 279 70 70 chr1 139129838 139130284 -58065148 - L1MA6 LINE L1 -367 5933 5488 2 1646 349 200 148 10 chr1 139130439 139130540 -58064892 - PB1D9 SINE Alu -5 115 1 2 1646 688 267 29 64 chr1 139130593 139130797 -58064635 + Lx7 LINE L1 7156 7352 -121 1 1646 315 49 0 0 chr1 139130853 139130894 -58064538 + (TGG)n Simple_repeat Simple_repeat 2 42 0 2 1646 637 147 0 44 chr1 139130897 139131011 -58064421 + B1_Mus2 SINE Alu 39 147 0 2 1646 598 191 161 13 chr1 139131156 139131305 -58064127 - B2_Mm2 SINE B2 -24 171 1 2 1646 218 29 59 0 chr1 139131336 139131370 -58064062 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1646 2644 113 7 22 chr1 139131380 139131747 -58063685 - L1_Mm LINE L1 -1147 4736 4367 2 1646 4703 101 17 9 chr1 139131747 139132389 -58063043 + Lx3A LINE L1 6326 6972 -9 2 1646 330 26 0 0 chr1 139132392 139132431 -58063001 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1646 2644 113 7 22 chr1 139132431 139132467 -58062965 - L1_Mm LINE L1 -1517 4366 4335 2 1646 384 230 0 13 chr1 139133558 139133633 -58061799 - ID4 SINE ID -9 74 1 2 1646 793 279 10 20 chr1 139133797 139133998 -58061434 - B3 SINE B2 0 216 18 2 1646 242 268 144 16 chr1 139134047 139134172 -58061260 + MIR SINE MIR 74 214 -48 2 1646 739 295 61 45 chr1 139135678 139135923 -58059509 + B4A SINE B4 1 249 -43 2 1646 335 107 23 23 chr1 139135977 139136063 -58059369 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1646 609 276 102 20 chr1 139136162 139136358 -58059074 + MER58B DNA MER1_type 17 228 -113 2 1646 264 30 0 0 chr1 139136906 139136939 -58058493 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 2 1646 349 140 8 34 chr1 139136951 139137017 -58058415 - B2_Mm2 SINE B2 -102 114 47 2 1646 1096 117 5 109 chr1 139137064 139137266 -58058166 - B2_Mm2 SINE B2 -14 181 1 2 1646 394 223 109 55 chr1 139137488 139137616 -58057816 - B1_Mur1 SINE Alu -1 148 14 2 1646 306 0 0 0 chr1 139138236 139138270 -58057162 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1646 355 155 12 12 chr1 139139165 139139250 -58056182 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 1646 332 250 15 0 chr1 139139260 139139328 -58056104 - B4A SINE B4 -12 280 212 2 1646 1663 316 127 27 chr1 139139339 139139832 -58055600 - Lx8 LINE L1 -28 7445 6873 2 1646 1911 99 116 30 chr1 139139832 139140134 -58055298 + ORR1A4 LTR MaLR 2 329 0 2 1646 1663 316 127 27 chr1 139140134 139140532 -58054900 - Lx8 LINE L1 -601 6872 6465 2 1646 666 284 8 101 chr1 139140571 139140818 -58054614 - B4A SINE B4 -68 224 1 2 1646 221 75 0 24 chr1 139140830 139140871 -58054561 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1646 29 0 0 0 chr1 139142126 139142155 -58053277 + AT_rich Low_complexity Low_complexity 1 29 0 2 1646 325 328 161 61 chr1 139142461 139142740 -58052692 + L2a LINE L2 3120 3426 0 2 1646 426 358 57 48 chr1 139143157 139143471 -58051961 - ORR1E LTR MaLR -11 348 32 2 1646 25 0 0 0 chr1 139143471 139143496 -58051936 + AT_rich Low_complexity Low_complexity 1 25 0 2 1646 421 302 17 0 chr1 139143624 139143743 -58051689 - B3A SINE B2 -75 123 3 2 1646 395 360 25 11 chr1 139144381 139144667 -58050765 + L1MB7 LINE L1 5044 5333 -813 2 1646 502 313 137 33 chr1 139144691 139145233 -58050199 + L1MB7 LINE L1 5375 5972 -212 2 1646 365 0 22 0 chr1 139145743 139145788 -58049644 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2 1646 1701 193 121 19 chr1 139145788 139146153 -58049279 + MTD LTR MaLR 18 419 0 2 1646 381 259 78 17 chr1 139146153 139146302 -58049130 + B3A SINE B2 38 182 -34 2 1646 823 246 25 25 chr1 139146974 139147170 -58048262 - B3 SINE B2 -10 206 11 2 1646 220 361 35 35 chr1 139147095 139147181 -58048251 - RSINE1 SINE B4 -79 86 1 2 1646 1900 279 97 5 chr1 139147962 139148589 -58046843 + Lx8 LINE L1 6786 7470 -3 2 1646 791 135 51 29 chr1 139149806 139149943 -58045489 - RLTR25B LTR ERVK 0 1028 889 2 1646 3902 180 49 24 chr1 139149925 139150564 -58044868 - RLTR25B LTR ERVK -252 776 117 2 1646 234 0 0 0 chr1 139150564 139150590 -58044842 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1646 3902 180 49 24 chr1 139150590 139150707 -58044725 - RLTR25B LTR ERVK -912 116 2 2 1646 208 323 94 25 chr1 139152540 139152699 -58042733 + MIRb SINE MIR 73 242 -26 2 1646 365 263 19 156 chr1 139153695 139153907 -58041525 - RMER15 LTR ERVL -392 183 1 2 1646 339 44 0 0 chr1 139154144 139154189 -58041243 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1646 369 310 20 20 chr1 139154206 139154308 -58041124 - B3 SINE B2 -92 124 23 2 1646 369 0 0 0 chr1 139154338 139154379 -58041053 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 2 1646 418 293 40 26 chr1 139154613 139154764 -58040668 - RMER10B LTR ERVL 0 398 246 2 1646 211 290 0 31 chr1 139155405 139155501 -58039931 + A-rich Low_complexity Low_complexity 3 95 0 2 1646 243 0 0 0 chr1 139155587 139155614 -58039818 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1646 279 0 0 0 chr1 139155614 139155644 -58039788 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1646 306 268 24 24 chr1 139156218 139156302 -58039130 - ID_B1 SINE B4 -126 98 15 2 1646 23 33 0 0 chr1 139156393 139156423 -58039009 + AT_rich Low_complexity Low_complexity 1 30 0 2 1646 239 372 164 36 chr1 139156599 139156928 -58038504 - MLT1J2 LTR MaLR -76 372 2 2 1646 1102 240 76 30 chr1 139157635 139157897 -58037535 - B4 SINE B4 -14 278 5 2 1646 237 65 0 0 chr1 139158086 139158117 -58037315 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2 1646 209 205 0 0 chr1 139160790 139160829 -58034603 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 2 1646 5696 89 35 1 chr1 139161278 139162031 -58033401 + Lx3A LINE L1 6202 6979 -2 2 1646 870 19 0 0 chr1 139162039 139162143 -58033289 + (CA)n Simple_repeat Simple_repeat 2 105 0 2 1646 229 209 0 0 chr1 139162228 139162271 -58033161 + CT-rich Low_complexity Low_complexity 3 45 0 2 1646 21 0 0 0 chr1 139162819 139162840 -58032592 + AT_rich Low_complexity Low_complexity 1 21 0 2 1646 911 224 49 19 chr1 139162843 139163048 -58032384 - B3 SINE B2 -5 211 1 2 1646 437 361 32 0 chr1 139163457 139163615 -58031817 + MER5A1 DNA MER1_type 3 165 -1 2 1646 282 87 0 0 chr1 139163664 139163710 -58031722 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1646 199 275 157 56 chr1 139163811 139163919 -58031513 + MIRb SINE MIR 88 206 -62 2 1646 279 0 0 0 chr1 139165154 139165185 -58030247 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1646 331 321 55 47 chr1 139165763 139166018 -58029414 - L1M5 LINE L1 -1347 4799 4543 2 1646 206 273 18 0 chr1 139166466 139166521 -58028911 + MIRc SINE MIR 105 160 -108 2 1646 355 236 40 8 chr1 139168523 139168647 -58026785 + Lx9 LINE L1 7513 7640 -4 2 1646 235 289 13 0 chr1 139169803 139169879 -58025553 + MER45A DNA Tip100 47 123 -55 2 1646 190 235 39 0 chr1 139170372 139170423 -58025009 - L2a LINE L2 -95 3331 3279 2 1646 2895 36 0 3 chr1 139170517 139170855 -58024577 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1646 9638 22 3 1 chr1 139170855 139171935 -58023497 - IAPEz-int LTR ERVK 0 6481 5400 2 1646 21478 34 41 15 chr1 139171910 139174508 -58020924 - IAPEz-int LTR ERVK -3807 2674 8 2 1646 2895 36 0 3 chr1 139174508 139174846 -58020586 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1646 414 307 222 33 chr1 139174905 139175714 -58019718 - L2a LINE L2 -349 3070 2109 2 1646 857 224 0 105 chr1 139175721 139175940 -58019492 + B3 SINE B2 2 197 -19 2 1646 1830 184 48 0 chr1 139175945 139176298 -58019134 + ORR1C1 LTR MaLR 1 370 -8 2 1646 23 0 0 0 chr1 139177254 139177277 -58018155 + AT_rich Low_complexity Low_complexity 1 23 0 2 1646 679 300 86 38 chr1 139178440 139178884 -58016548 + L1ME3A LINE L1 5523 5987 -186 2 1646 560 108 63 0 chr1 139178917 139179028 -58016404 - Lx9 LINE L1 -1 7643 7526 2 1646 459 0 0 0 chr1 139179029 139179080 -58016352 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1646 752 201 174 14 chr1 139179104 139179320 -58016112 - Lx9 LINE L1 -232 7412 7162 2 1646 704 358 99 43 chr1 139179908 139180735 -58014697 + MLT1J-int LTR MaLR 449 1321 -66 2 1646 718 82 4 6 chr1 139181007 139181125 -58014307 + B1_Mm SINE Alu 20 136 -13 2 1646 387 17 0 48 chr1 139181125 139181188 -58014244 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 2 1646 260 188 0 0 chr1 139181394 139181452 -58013980 + B1F SINE Alu 62 148 -1 2 1646 1908 196 46 0 chr1 139181608 139181955 -58013477 - Lx5 LINE L1 -194 6856 6494 2 1646 1449 159 17 4 chr1 139181958 139182192 -58013240 + Lx5 LINE L1 6258 6494 -556 2 1646 234 105 0 0 chr1 139182306 139182344 -58013088 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1646 401 290 51 2 chr1 139182348 139182503 -58012929 - L1MA4A LINE L1 -357 5943 5785 2 1646 957 273 140 19 chr1 139182502 139182924 -58012508 - L1MA4A LINE L1 -1039 5104 4632 2 1646 614 297 0 0 chr1 139182930 139183075 -58012357 + RSINE1 SINE B4 4 148 -17 2 1646 228 222 88 80 chr1 139183141 139183278 -58012154 - Lx8 LINE L1 0 7473 7336 2 1646 2535 116 5 23 chr1 139183290 139183677 -58011755 - Lx2B LINE L1 -273 6727 6348 2 1646 2059 106 3 13 chr1 139183677 139183982 -58011450 + Lx2 LINE L1 6695 6996 -1 2 1646 303 140 0 0 chr1 139184005 139184055 -58011377 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1646 2057 310 94 16 chr1 139184083 139184968 -58010464 - Lx8 LINE L1 -185 7288 6335 2 1646 208 206 0 0 chr1 139184980 139185014 -58010418 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1646 1819 150 16 88 chr1 139185071 139185444 -58009988 + ORR1B1 LTR MaLR 41 386 -8 2 1646 23 33 0 0 chr1 139185468 139185498 -58009934 + AT_rich Low_complexity Low_complexity 1 30 0 2 1646 3887 25 5 2 chr1 139185632 139186080 -58009352 - L1Md_F2 LINE L1 -3 6579 6131 2 1646 307 284 23 0 chr1 139186091 139186179 -58009253 - L1MA4A LINE L1 -1499 4644 4555 2 1646 1797 229 10 51 chr1 139186264 139186756 -58008676 + RMER19C LTR ERVK 138 609 -2 2 1646 312 325 97 81 chr1 139187606 139187988 -58007444 - L1MEg LINE L1 -4987 1097 710 2 1646 266 275 25 12 chr1 139188017 139188098 -58007334 + MLT1B LTR MaLR 30 111 -279 2 1646 242 324 93 16 chr1 139188256 139188438 -58006994 + MLT1B LTR MaLR 188 383 -7 2 1646 780 260 55 26 chr1 139188612 139188884 -58006548 - B4A SINE B4 -12 280 1 3 1646 3195 73 2 0 chr1 139189614 139190009 -58005423 + MTA_Mm LTR MaLR 1 396 0 3 1646 984 257 14 0 chr1 139191029 139191239 -58004193 + B3 SINE B2 1 213 -3 3 1646 397 327 17 86 chr1 139191341 139191515 -58003917 - MLT1A LTR MaLR -35 339 178 3 1646 447 335 81 19 chr1 139191597 139191856 -58003576 + ORR1E LTR MaLR 105 379 0 3 1646 659 357 64 24 chr1 139191865 139192195 -58003237 + ORR1E-int LTR MaLR 19 361 -1219 3 1646 1567 284 145 12 chr1 139192249 139192841 -58002591 + ORR1E-int LTR MaLR 553 1223 -357 3 1646 388 297 26 29 chr1 139192809 139193002 -58002430 + ORR1E-int LTR MaLR 1446 1579 -1 3 1646 610 128 47 7 chr1 139193114 139193264 -58002168 + GA-rich Low_complexity Low_complexity 1 156 0 3 1646 493 106 28 19 chr1 139193293 139193399 -58002033 + GA-rich Low_complexity Low_complexity 2 108 0 3 1646 829 300 32 67 chr1 139193421 139193764 -58001668 + ORR1E LTR MaLR 29 359 0 3 1646 497 109 40 71 chr1 139194253 139194352 -58001080 + B1_Mus2 SINE Alu 54 150 0 3 1646 243 57 0 70 chr1 139194352 139194409 -58001023 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 3 1646 1122 70 18 0 chr1 139194410 139194581 -58000851 + RMER10B LTR ERVL 1 174 -224 3 1646 408 88 0 0 chr1 139194641 139194698 -58000734 + (CGGGGG)n Simple_repeat Simple_repeat 5 61 0 3 1646 273 162 0 0 chr1 139195422 139195490 -57999942 + A-rich Low_complexity Low_complexity 1 68 0 3 1646 749 152 7 0 chr1 139195586 139195724 -57999708 + CT-rich Low_complexity Low_complexity 2 140 0 3 1646 466 315 16 0 chr1 139195726 139195853 -57999579 - B4 SINE B4 -73 219 91 3 1646 392 278 14 70 chr1 139195846 139195989 -57999443 - B4 SINE B4 -157 135 1 3 1646 3790 55 51 0 chr1 139196362 139196853 -57998579 - Lx3_Mus LINE L1 -351 6658 6143 3 1646 2130 94 41 41 chr1 139196853 139197198 -57998234 + Lx3_Mus LINE L1 6665 7009 0 3 1646 26 30 0 0 chr1 139197198 139197231 -57998201 + AT_rich Low_complexity Low_complexity 1 33 0 3 1647 470 207 108 20 chr1 139198675 139198823 -57996609 + MER2 DNA MER2_type 111 271 -74 3 1647 418 327 5 50 chr1 139199893 139200112 -57995320 - BGLII_B LTR ERVK -27 414 206 3 1647 6831 128 22 9 chr1 139200112 139200597 -57994835 - Lx LINE L1 -15 6639 6152 3 1647 2327 19 86 0 chr1 139200597 139200866 -57994566 + RLTR10B LTR ERVK 1 292 0 3 1647 15168 148 10 66 chr1 139200866 139203289 -57992143 - Lx LINE L1 -503 6151 3738 3 1647 528 90 0 11 chr1 139203289 139203379 -57992053 + L1Md_F2 LINE L1 6494 6582 0 3 1647 15168 154 7 83 chr1 139203379 139203550 -57991882 - Lx LINE L1 -2140 3737 3712 3 1647 264 30 0 0 chr1 139203550 139203583 -57991849 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 1647 15168 154 7 83 chr1 139203583 139203826 -57991606 - Lx LINE L1 -2166 3711 3523 3 1647 2581 27 0 0 chr1 139203826 139204123 -57991309 - L1Md_F2 LINE L1 -13 6569 6273 3 1647 15168 154 7 83 chr1 139204123 139204609 -57990823 - Lx LINE L1 -2355 3522 3041 3 1647 671 159 0 0 chr1 139204605 139204712 -57990720 - L1VL4 LINE L1 -6169 133 27 3 1647 466 262 61 43 chr1 139204712 139204945 -57990487 - RLTR11A2 LTR ERVK -216 229 3 3 1647 4130 191 126 52 chr1 139205662 139205752 -57989680 - RMER1B Other Other -3 1063 943 3 1647 315 0 0 0 chr1 139205752 139205787 -57989645 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1647 4130 191 126 52 chr1 139205787 139206684 -57988748 - RMER1B Other Other -124 942 4 3 1647 291 294 0 19 chr1 139206715 139206758 -57988674 + polypyrimidine Low_complexity Low_complexity 62 104 0 3 1647 2025 128 0 76 chr1 139206758 139207114 -57988318 + ORR1A4 LTR MaLR 1 329 0 3 1647 291 294 0 19 chr1 139207114 139207174 -57988258 + polypyrimidine Low_complexity Low_complexity 3 61 0 3 1647 230 375 0 0 chr1 139207176 139207256 -57988176 - ID4_ SINE ID -2 81 2 3 1647 649 42 63 0 chr1 139207417 139207512 -57987920 + L1_Mus1 LINE L1 6467 6567 0 3 1647 1926 149 74 6 chr1 139208543 139208744 -57986688 - ORR1C1 LTR MaLR 0 378 175 3 1647 1026 25 0 0 chr1 139208744 139208865 -57986567 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 1647 1926 149 74 6 chr1 139208865 139209013 -57986419 - ORR1C1 LTR MaLR -204 174 5 3 1647 485 32 16 0 chr1 139213603 139213666 -57981766 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 3 1647 264 59 0 0 chr1 139215022 139215056 -57980376 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1647 21 0 0 0 chr1 139215331 139215352 -57980080 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 567 29 0 0 chr1 139215690 139215759 -57979673 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1647 4702 165 22 19 chr1 139217110 139217961 -57977471 - RMER13A LTR ERVK -6 854 1 3 1647 23 33 0 0 chr1 139218486 139218516 -57976916 + AT_rich Low_complexity Low_complexity 1 30 0 3 1647 539 299 19 58 chr1 139218691 139218897 -57976535 + ORR1E LTR MaLR 34 231 -128 3 1647 644 157 8 16 chr1 139218873 139218996 -57976436 - RMER13A LTR ERVK -504 356 235 3 1647 419 155 100 30 chr1 139218994 139219094 -57976338 + ORR1E LTR MaLR 263 369 -10 3 1647 232 136 0 196 chr1 139220137 139220357 -57975075 + (CTGGGG)n Simple_repeat Simple_repeat 1 177 0 3 1647 200 339 0 11 chr1 139220411 139220587 -57974845 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 3 1647 351 0 0 0 chr1 139221135 139221174 -57974258 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1647 400 316 60 33 chr1 139222510 139222693 -57972739 - ORR1E LTR MaLR -168 191 4 3 1647 231 36 0 0 chr1 139222817 139222845 -57972587 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 1647 1112 82 7 14 chr1 139222846 139222994 -57972438 - B1_Mus2 SINE Alu 0 147 1 3 1647 24 100 0 0 chr1 139223506 139223586 -57971846 + AT_rich Low_complexity Low_complexity 1 80 0 3 1647 28 48 0 0 chr1 139223711 139223753 -57971679 + AT_rich Low_complexity Low_complexity 1 42 0 3 1647 308 343 9 0 chr1 139223753 139223858 -57971574 - L1MC LINE L1 -2089 5696 5591 3 1647 403 316 89 18 chr1 139223864 139224075 -57971357 - L1MC LINE L1 -3139 3007 2773 3 1647 360 59 0 0 chr1 139224075 139224126 -57971306 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 1647 403 316 89 18 chr1 139224126 139224252 -57971180 - L1MC LINE L1 -3374 2772 2646 3 1647 513 155 34 120 chr1 139224452 139224569 -57970863 + B1_Mur4 SINE Alu 41 147 -3 3 1647 444 37 0 0 chr1 139226051 139226105 -57969327 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1647 916 193 188 27 chr1 139226485 139226671 -57968761 + B3 SINE B2 1 216 0 3 1647 329 111 24 36 chr1 139227253 139227337 -57968095 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 3 1647 180 0 0 0 chr1 139228485 139228505 -57966927 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1647 198 0 0 0 chr1 139228842 139228864 -57966568 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1647 315 322 98 25 chr1 139230712 139230948 -57964484 - LTR16B LTR ERVL -147 316 64 3 1647 2041 243 103 50 chr1 139231133 139231407 -57964025 - MMAR1 DNA Mariner -583 703 412 3 1647 1291 119 10 10 chr1 139231407 139231602 -57963830 - B2_Mm2 SINE B2 0 195 1 3 1647 2041 243 103 50 chr1 139231602 139231994 -57963438 - MMAR1 DNA Mariner -875 411 1 3 1647 277 289 36 0 chr1 139232203 139232286 -57963146 + MMAR1 DNA Mariner 674 759 -527 3 1647 332 269 0 11 chr1 139232276 139232370 -57963062 + MMAR1 DNA Mariner 1192 1284 -2 3 1647 189 0 0 0 chr1 139233712 139233733 -57961699 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1647 317 311 28 19 chr1 139233769 139233877 -57961555 - PB1D10 SINE Alu -7 110 2 3 1647 302 268 72 0 chr1 139233885 139233982 -57961450 - L1MEf LINE L1 -2299 4020 3917 3 1647 8697 23 0 0 chr1 139233998 139235422 -57960010 - L1Md_T LINE L1 0 6585 5162 3 1647 38840 30 0 0 chr1 139235436 139242080 -57953352 - L1Md_T LINE L1 0 6585 1 3 1647 32538 48 0 4 chr1 139242078 139247146 -57948286 - L1Md_T LINE L1 -711 5175 31 3 1647 308 294 28 7 chr1 139247153 139247297 -57948135 - L1MEf LINE L1 -2451 3868 3722 3 1647 434 313 73 40 chr1 139247376 139247908 -57947524 - L1MC LINE L1 -860 5286 4737 3 1647 365 261 101 55 chr1 139248028 139248357 -57947075 - L1MEf LINE L1 -4699 1716 1337 3 1647 304 308 51 12 chr1 139248379 139248635 -57946797 + L1M4 LINE L1 2869 3134 -3012 3 1647 238 182 152 57 chr1 139248698 139248803 -57946629 - Lx8 LINE L1 0 7473 7359 3 1647 333 242 36 44 chr1 139249176 139249274 -57946158 + MER58B DNA MER1_type 2 100 -241 3 1647 515 286 87 0 chr1 139251235 139251396 -57944036 + Tigger5 DNA MER2_type 2 176 -2230 3 1647 592 292 247 27 chr1 139251641 139251937 -57943495 + MLT1A0 LTR MaLR 5 365 0 3 1647 192 292 135 0 chr1 139251957 139252046 -57943386 + MIRc SINE MIR 98 201 -67 3 1647 30 77 0 0 chr1 139252046 139252111 -57943321 + AT_rich Low_complexity Low_complexity 1 65 0 3 1647 708 310 62 19 chr1 139253388 139253713 -57941719 - MLT1C LTR MaLR -16 451 113 3 1647 493 370 92 9 chr1 139253796 139254219 -57941213 - Lx8 LINE L1 -2 7471 7014 3 1647 489 17 0 0 chr1 139254409 139254467 -57940965 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 1647 182 35 35 0 chr1 139254472 139254489 -57940943 + (TA)n Simple_repeat Simple_repeat 2 18 0 3 1647 252 122 0 0 chr1 139254489 139254530 -57940902 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1647 182 35 35 0 chr1 139254530 139254541 -57940891 + (TA)n Simple_repeat Simple_repeat 2 13 0 3 1647 987 334 21 3 chr1 139254546 139254879 -57940553 - Lx8 LINE L1 -148 7325 6987 3 1647 1351 88 10 0 chr1 139254881 139255073 -57940359 - MTB LTR MaLR -206 194 1 3 1647 3735 288 56 38 chr1 139255074 139255864 -57939568 - Lx8 LINE L1 -493 6980 6169 3 1647 282 73 0 0 chr1 139255864 139255905 -57939527 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1647 3735 294 55 34 chr1 139255905 139256618 -57938814 - Lx8 LINE L1 -1305 6168 5439 3 1647 851 235 70 5 chr1 139258137 139258338 -57937094 - B3 SINE B2 0 216 3 3 1647 938 238 42 41 chr1 139258414 139258661 -57936771 + Lx9 LINE L1 6120 6493 -1151 3 1647 1199 208 187 120 chr1 139258677 139259195 -57936237 + RMER4B LTR ERVK 33 585 0 3 1647 2396 234 79 36 chr1 139259195 139259826 -57935606 + Lx9 LINE L1 6488 7145 -499 3 1647 431 336 46 18 chr1 139260024 139260242 -57935190 - MIR SINE MIR -36 226 3 3 1647 523 104 5 21 chr1 139260484 139260580 -57934852 - B1_Mus2 SINE Alu -55 95 6 3 1647 1442 88 16 0 chr1 139260881 139261073 -57934359 + B2_Mm2 SINE B2 1 195 0 3 1647 456 19 0 0 chr1 139262187 139262240 -57933192 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1647 449 312 245 8 chr1 139262241 139262849 -57932583 - L2 LINE L2 -557 2862 2111 3 1647 27 73 0 0 chr1 139262988 139263043 -57932389 + AT_rich Low_complexity Low_complexity 1 55 0 3 1647 24 32 0 0 chr1 139263267 139263298 -57932134 + AT_rich Low_complexity Low_complexity 1 31 0 3 1647 200 86 29 0 chr1 139263298 139263333 -57932099 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1647 223 175 0 34 chr1 139263333 139263383 -57932049 + GA-rich Low_complexity Low_complexity 6 54 0 3 1647 1120 106 6 6 chr1 139263383 139263563 -57931869 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1647 3779 182 56 47 chr1 139263909 139264745 -57930687 + Lx7 LINE L1 6853 7696 0 3 1647 944 185 104 30 chr1 139264861 139265062 -57930370 - B3 SINE B2 0 216 1 3 1647 339 259 52 98 chr1 139265771 139265867 -57929565 - L1M5 LINE L1 -758 5388 5298 3 1647 3731 77 2 9 chr1 139265867 139266329 -57929103 - L1_Mus2 LINE L1 0 6566 6108 4 1647 339 259 52 98 chr1 139266329 139266425 -57929007 - L1M5 LINE L1 -849 5297 5205 3 1647 317 125 18 0 chr1 139266455 139266511 -57928921 + (CATA)n Simple_repeat Simple_repeat 3 59 0 4 1647 227 200 20 0 chr1 139266867 139266917 -57928515 - L1M1 LINE L1 -415 5885 5835 4 1647 254 301 133 13 chr1 139267146 139267304 -57928128 + Tigger7 DNA MER2_type 132 308 -2183 4 1647 582 285 148 25 chr1 139267504 139267821 -57927611 + Tigger7 DNA MER2_type 2136 2491 0 4 1647 469 250 29 9 chr1 139268812 139268917 -57926515 + B1F SINE Alu 35 141 -8 4 1647 331 261 0 0 chr1 139268922 139268987 -57926445 + ID4 SINE ID 15 79 -4 4 1647 220 303 39 47 chr1 139269167 139269295 -57926137 - B1_Mus1 SINE Alu -10 138 12 4 1647 392 298 31 72 chr1 139269186 139269381 -57926051 - ID_B1 SINE B4 -28 196 10 4 1647 364 271 102 21 chr1 139269858 139270018 -57925414 - MER3 DNA MER1_type -42 167 1 4 1647 630 134 16 8 chr1 139270937 139270967 -57924465 + polypyrimidine Low_complexity Low_complexity 101 130 0 4 1647 861 10 0 0 chr1 139270967 139271065 -57924367 + (TTCCC)n Simple_repeat Simple_repeat 2 99 0 4 1647 630 134 16 8 chr1 139271065 139271162 -57924270 + polypyrimidine Low_complexity Low_complexity 2 100 0 4 1647 215 354 16 49 chr1 139271611 139271733 -57923699 + MIRb SINE MIR 131 248 -20 4 1647 432 0 0 0 chr1 139272181 139272229 -57923203 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1647 23 54 0 0 chr1 139272886 139272923 -57922509 + AT_rich Low_complexity Low_complexity 1 37 0 4 1647 237 65 0 0 chr1 139273888 139273919 -57921513 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 4 1647 354 247 31 10 chr1 139274263 139274361 -57921071 + G-rich Low_complexity Low_complexity 1 100 0 4 1647 1083 120 0 0 chr1 139274362 139274529 -57920903 + (GAA)n Simple_repeat Simple_repeat 3 169 0 4 1647 1181 96 0 11 chr1 139274529 139274708 -57920724 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 1647 645 14 0 0 chr1 139275706 139275780 -57919652 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1647 310 321 82 43 chr1 139276112 139276441 -57918991 - L1MC5 LINE L1 -75 7886 7545 4 1647 5585 60 12 4 chr1 139276467 139277149 -57918283 - L1Md_F2 LINE L1 0 6582 5896 4 1647 239 36 0 0 chr1 139277149 139277177 -57918255 + L1Md_F2 LINE L1 5895 5922 -644 4 1647 260 130 27 55 chr1 139277180 139277253 -57918179 + T-rich Low_complexity Low_complexity 4 74 0 4 1647 334 295 58 68 chr1 139277319 139277526 -57917906 - L1MC5 LINE L1 -596 7365 7161 4 1647 379 245 25 28 chr1 139277522 139277685 -57917747 - Lx9 LINE L1 0 7644 7477 4 1647 621 0 0 0 chr1 139278233 139278302 -57917130 + (GGAAA)n Simple_repeat Simple_repeat 5 73 0 4 1647 234 291 144 12 chr1 139278324 139278574 -57916858 - L1MC2 LINE L1 -97 6247 5965 4 1647 228 248 10 19 chr1 139278716 139278819 -57916613 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1647 906 274 72 27 chr1 139278950 139279619 -57915813 - L1MC2 LINE L1 -501 5843 5146 4 1647 1036 272 20 20 chr1 139280006 139280306 -57915126 - Lx8 LINE L1 -182 7291 6992 4 1647 1572 295 40 17 chr1 139280291 139280870 -57914562 + Lx8 LINE L1 6357 6948 -525 4 1647 189 0 0 0 chr1 139280996 139281017 -57914415 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1647 494 234 30 200 chr1 139281094 139281121 -57914311 - B3A SINE B2 -3 195 174 4 1647 609 101 0 0 chr1 139281121 139281220 -57914212 + (TCCA)n Simple_repeat Simple_repeat 4 102 0 4 1647 494 234 30 200 chr1 139281220 139281427 -57914005 - B3A SINE B2 -25 173 1 4 1647 1083 251 62 0 chr1 139281714 139282021 -57913411 - Lx9 LINE L1 -25 7619 7294 4 1647 385 241 0 0 chr1 139282040 139282127 -57913305 - B4 SINE B4 -205 87 1 4 1647 587 256 113 10 chr1 139282137 139282437 -57912995 - L1MC2 LINE L1 -2191 3955 3625 4 1647 2986 126 4 13 chr1 139282588 139283054 -57912378 + Lx2 LINE L1 6536 6997 0 4 1647 688 151 62 35 chr1 139283445 139283589 -57911843 + B1_Mur2 SINE Alu 1 148 -1 4 1647 382 313 232 0 chr1 139284294 139284527 -57910905 - L1ME2 LINE L1 -218 5946 5660 4 1647 324 186 28 0 chr1 139284756 139284843 -57910589 - L1ME2 LINE L1 -681 5503 5412 4 1647 483 300 93 74 chr1 139285156 139285426 -57910006 + MLT1A0 LTR MaLR 11 285 -80 4 1647 251 298 36 13 chr1 139285646 139285828 -57909604 - L1MEc LINE L1 -4901 1732 1523 4 1647 384 154 9 19 chr1 139286048 139286154 -57909278 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 1647 515 346 47 60 chr1 139286199 139286497 -57908935 - ORR1E LTR MaLR -42 317 24 4 1647 224 242 273 32 chr1 139287035 139287189 -57908243 + MIR SINE MIR 8 198 -64 4 1647 795 197 38 0 chr1 139287203 139287335 -57908097 - B1_Mur4 SINE Alu -13 137 1 4 1647 186 371 62 6 chr1 139287734 139287913 -57907519 + L3 LINE CR1 3932 4120 -369 4 1647 219 376 21 11 chr1 139288033 139288127 -57907305 - MIRb SINE MIR -18 250 152 4 1647 309 170 22 11 chr1 139288870 139288959 -57906473 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 4 1647 282 29 0 0 chr1 139289043 139289078 -57906354 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1647 1221 106 0 0 chr1 139289236 139289416 -57906016 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1647 998 164 8 6 chr1 139289425 139289782 -57905650 + CT-rich Low_complexity Low_complexity 1 357 0 4 1647 2904 99 5 0 chr1 139290071 139290487 -57904945 + MusHAL1 LINE L1 18 435 -2919 4 1647 2920 67 5 13 chr1 139290491 139290886 -57904546 - MTB LTR MaLR -8 392 1 4 1647 332 316 0 0 chr1 139290937 139291013 -57904419 + B4A SINE B4 7 82 -210 4 1647 1241 304 64 6 chr1 139291272 139291629 -57903803 + MTEa LTR MaLR 2 379 0 4 1647 394 260 56 37 chr1 139293613 139293721 -57901711 - PB1D10 SINE Alu -7 110 1 4 1647 306 0 0 0 chr1 139293723 139293757 -57901675 + (CTAA)n Simple_repeat Simple_repeat 1 34 0 4 1647 294 73 0 0 chr1 139293757 139293797 -57901635 + (TATG)n Simple_repeat Simple_repeat 2 42 0 4 1647 302 277 127 63 chr1 139294071 139294260 -57901172 - MLT1A1 LTR MaLR -206 202 2 4 1647 270 0 0 0 chr1 139294457 139294487 -57900945 + (TAA)n Simple_repeat Simple_repeat 3 32 0 4 1647 226 374 10 0 chr1 139294501 139294600 -57900832 - L2 LINE L2 -467 2952 2853 4 1647 2054 201 122 25 chr1 139294600 139294734 -57900698 - RMER17B LTR ERVK -393 565 432 4 1647 585 0 0 0 chr1 139294734 139294799 -57900633 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1647 2054 201 122 25 chr1 139294799 139295179 -57900253 - RMER17B LTR ERVK -527 431 1 4 1647 343 290 57 21 chr1 139295359 139295500 -57899932 - B1F SINE Alu -3 146 1 4 1647 660 329 175 52 chr1 139296485 139297354 -57898078 - MTE-int LTR MaLR -79 1501 526 4 1647 1733 129 21 39 chr1 139297368 139297698 -57897734 - RLTR28 LTR ERVL -14 510 187 4 1647 1290 131 102 25 chr1 139297690 139297925 -57897507 - RLTR28 LTR ERVL -271 253 1 4 1647 302 159 14 0 chr1 139297957 139298026 -57897406 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1647 424 301 110 42 chr1 139298033 139298224 -57897208 - B4A SINE B4 0 292 89 4 1647 440 375 104 39 chr1 139298340 139298753 -57896679 - MTE-int LTR MaLR -1139 441 2 4 1647 369 43 0 0 chr1 139299942 139299989 -57895443 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1647 3039 111 63 2 chr1 139300358 139300835 -57894597 - Lx2B LINE L1 -2 6998 6493 4 1647 1788 192 38 38 chr1 139300835 139301231 -57894201 + Lx3C LINE L1 6579 6974 -2 4 1647 984 281 132 24 chr1 139301290 139301836 -57893596 + Lx9 LINE L1 6916 7520 -124 4 1647 46 19 0 0 chr1 139301836 139301889 -57893543 + AT_rich Low_complexity Low_complexity 1 53 0 4 1647 384 200 0 0 chr1 139301905 139301985 -57893447 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 4 1647 3508 198 19 40 chr1 139303665 139304522 -57890910 - Lx3C LINE L1 -3 6973 6135 4 1647 18174 150 88 8 chr1 139304511 139306645 -57888787 - Lx3C LINE L1 -1009 5967 3488 4 1647 212 0 36 0 chr1 139306645 139306673 -57888759 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1647 18174 154 103 9 chr1 139306673 139308499 -57886933 - Lx3C LINE L1 -2390 3487 1639 4 1647 369 0 0 0 chr1 139308499 139308540 -57886892 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 4 1647 505 165 42 34 chr1 139308540 139308554 -57886878 - L1Md_T LINE L1 -875 5707 5694 4 1647 1293 83 0 0 chr1 139308554 139308734 -57886698 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1647 19636 161 91 7 chr1 139308734 139310613 -57884819 - L1_Mur1 LINE L1 -188 5698 3488 4 1647 310 21 21 21 chr1 139310613 139310661 -57884771 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1647 19636 161 91 7 chr1 139310661 139312485 -57882947 - L1_Mur1 LINE L1 -2399 3487 1648 4 1647 1046 140 6 0 chr1 139312485 139312664 -57882768 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1647 19636 161 91 7 chr1 139312664 139312680 -57882752 - L1_Mur1 LINE L1 -4239 1647 1632 4 1647 468 35 0 0 chr1 139312680 139312738 -57882694 + (TTTTC)n Simple_repeat Simple_repeat 5 62 0 4 1647 19636 159 45 3 chr1 139312738 139313308 -57882124 - L1_Mur1 LINE L1 -4255 1631 1058 4 1647 299 291 133 19 chr1 139313600 139313705 -57881727 - PB1D7 SINE Alu -1 119 3 4 1647 234 316 15 190 chr1 139314233 139314428 -57881004 - B3 SINE B2 -7 209 49 4 1647 530 290 86 14 chr1 139314332 139314472 -57880960 - B4A SINE B4 -142 150 1 4 1647 704 247 78 16 chr1 139314570 139314685 -57880747 + Lx7 LINE L1 3228 3360 -2520 4 1647 341 22 0 21 chr1 139314685 139314732 -57880700 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 1647 704 247 78 16 chr1 139314732 139314871 -57880561 + Lx7 LINE L1 3361 3497 -2383 4 1647 1407 224 62 54 chr1 139314872 139315313 -57880119 - RMER16 LTR ERVK 0 533 1 4 1647 216 0 0 0 chr1 139315350 139315374 -57880058 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1647 2825 238 24 17 chr1 139315412 139316216 -57879216 + Lx7 LINE L1 3560 4368 -1512 4 1647 2168 252 87 18 chr1 139316223 139316679 -57878753 + Lx7 LINE L1 5045 5525 -355 4 1647 2515 146 57 18 chr1 139316679 139317120 -57878312 + RMER6B LTR ERVK 1 458 -3 4 1647 3821 274 53 43 chr1 139317120 139318715 -57876717 + Lx7 LINE L1 5526 7112 -584 4 1647 279 288 12 0 chr1 139318732 139318812 -57876620 + MTE2a LTR MaLR 299 379 0 4 1647 443 284 183 43 chr1 139318973 139319208 -57876224 + MLT1A0 LTR MaLR 28 295 -70 4 1647 207 188 0 0 chr1 139319422 139319470 -57875962 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1647 339 361 42 6 chr1 139319700 139319867 -57875565 - LTR82B Low_complexity ERVL -135 695 523 4 1647 975 273 43 59 chr1 139320131 139320521 -57874911 + MTE2a LTR MaLR 22 419 0 4 1647 2208 162 40 25 chr1 139320601 139320999 -57874433 + MTC LTR MaLR 1 404 -17 4 1647 1006 293 62 12 chr1 139321023 139321598 -57873834 - L1MB1 LINE L1 -271 5918 5306 4 1647 729 250 76 5 chr1 139321800 139321997 -57873435 - B3 SINE B2 -4 212 2 4 1647 313 275 194 21 chr1 139322130 139322223 -57873209 + B3A SINE B2 58 166 -32 4 1647 264 30 0 0 chr1 139322226 139322259 -57873173 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1647 420 135 0 0 chr1 139322464 139322538 -57872894 + (CGTG)n Simple_repeat Simple_repeat 2 75 0 4 1647 212 196 22 0 chr1 139322538 139322584 -57872848 - B4 SINE B4 -244 48 2 5 1647 338 287 11 0 chr1 139322643 139322730 -57872702 - 4.5SRNA scRNA scRNA -6 88 1 5 1647 366 358 23 50 chr1 139322733 139322951 -57872481 - L1MB1 LINE L1 -879 5264 5053 4 1647 22 0 0 0 chr1 139322969 139322991 -57872441 + AT_rich Low_complexity Low_complexity 1 22 0 5 1647 26 0 0 0 chr1 139323030 139323056 -57872376 + AT_rich Low_complexity Low_complexity 1 26 0 5 1647 252 185 0 0 chr1 139323317 139323371 -57872061 + CT-rich Low_complexity Low_complexity 2 55 0 5 1647 598 292 12 24 chr1 139323397 139323562 -57871870 - RSINE1 SINE B4 0 165 3 5 1647 895 160 124 27 chr1 139324345 139324699 -57870733 - RMER6B LTR ERVK -10 451 3 5 1647 212 327 39 0 chr1 139324731 139324783 -57870649 - ID4 SINE ID -24 59 6 5 1647 269 139 0 0 chr1 139325626 139325669 -57869763 + Ricksha_c DNA MuDR 354 396 -1652 5 1647 423 0 0 0 chr1 139325686 139325733 -57869699 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1647 498 17 0 0 chr1 139325733 139325791 -57869641 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1647 205 235 24 0 chr1 139326629 139326714 -57868718 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 1647 22 35 0 0 chr1 139326793 139326822 -57868610 + AT_rich Low_complexity Low_complexity 1 29 0 5 1647 3829 217 51 59 chr1 139326922 139327101 -57868331 - Lx6 LINE L1 0 7460 7252 5 1647 267 31 0 0 chr1 139327101 139327133 -57868299 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1647 3829 217 51 59 chr1 139327133 139327484 -57867948 - Lx6 LINE L1 -209 7251 6896 5 1647 405 0 0 0 chr1 139327484 139327529 -57867903 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1647 3829 217 51 59 chr1 139327529 139327904 -57867528 - Lx6 LINE L1 -565 6895 6551 5 1647 620 161 28 42 chr1 139327904 139328047 -57867385 - Lx4B LINE L1 0 7058 6918 5 1647 3829 217 51 59 chr1 139328047 139328105 -57867327 - Lx6 LINE L1 -910 6550 6506 5 1647 360 0 0 0 chr1 139328539 139328579 -57866853 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1647 21 36 0 0 chr1 139329280 139329308 -57866124 + AT_rich Low_complexity Low_complexity 1 28 0 5 1648 289 280 94 16 chr1 139330255 139330382 -57865050 + L2 LINE L2 198 334 -3085 5 1648 364 209 9 18 chr1 139330932 139331044 -57864388 + CT-rich Low_complexity Low_complexity 3 113 0 5 1648 208 328 41 49 chr1 139331249 139331371 -57864061 + L2 LINE L2 1801 1921 -1498 5 1648 500 331 117 4 chr1 139331997 139332246 -57863186 + L2 LINE L2 2615 2891 -528 5 1648 564 15 0 0 chr1 139332601 139332666 -57862766 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 5 1648 753 85 0 0 chr1 139333629 139333735 -57861697 + (TCCC)n Simple_repeat Simple_repeat 4 109 0 5 1648 5231 236 47 43 chr1 139333785 139336092 -57859340 - Lx5 LINE L1 -18 7032 4734 5 1648 245 71 89 0 chr1 139336550 139336606 -57858826 + (CAAA)n Simple_repeat Simple_repeat 3 63 0 5 1648 3943 71 0 38 chr1 139336668 139337221 -57858211 - L1Md_F2 LINE L1 -1 6581 6050 5 1648 21 0 0 0 chr1 139337232 139337253 -57858179 + AT_rich Low_complexity Low_complexity 1 21 0 5 1648 319 304 132 106 chr1 139337559 139337945 -57857487 + MLT1A1 LTR MaLR 13 408 0 5 1648 180 355 45 27 chr1 139339623 139339733 -57855699 - MIRb SINE MIR -140 128 17 5 1648 671 81 10 0 chr1 139342576 139342675 -57852757 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1648 26 0 0 0 chr1 139342852 139342878 -57852554 + AT_rich Low_complexity Low_complexity 1 26 0 5 1648 252 364 37 50 chr1 139342902 139343161 -57852271 + L2b LINE L2 2871 3119 -256 5 1648 216 0 0 0 chr1 139343189 139343213 -57852219 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1648 206 227 61 0 chr1 139344487 139344553 -57850879 + CT-rich Low_complexity Low_complexity 3 72 0 5 1648 210 174 0 0 chr1 139344686 139344732 -57850700 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1648 1757 264 77 45 chr1 139345739 139346332 -57849100 + L1_Rod LINE L1 902 1524 -4323 5 1648 1095 139 0 0 chr1 139346332 139346512 -57848920 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1648 1757 261 76 67 chr1 139346512 139347169 -57848263 + L1_Rod LINE L1 1525 2176 -3671 5 1648 189 0 0 0 chr1 139347182 139347203 -57848229 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1648 348 348 57 9 chr1 139347214 139347426 -57848006 + Lx8 LINE L1 6846 7067 -406 5 1648 235 252 150 63 chr1 139348276 139348403 -57847029 - MLT1C LTR MaLR -147 448 311 5 1648 237 337 0 22 chr1 139348717 139348808 -57846624 - MLT1C LTR MaLR -324 143 55 5 1648 243 0 0 0 chr1 139351250 139351277 -57844155 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1648 4852 52 0 2 chr1 139352014 139352617 -57842815 + L1Md_F2 LINE L1 5981 6582 0 5 1648 2289 131 0 24 chr1 139352612 139352988 -57842444 + L1_Mus4 LINE L1 6270 6636 0 5 1648 385 265 72 30 chr1 139353704 139353988 -57841444 - L1MB1 LINE L1 -293 5896 5600 5 1648 495 0 0 0 chr1 139354904 139354959 -57840473 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1648 360 0 0 0 chr1 139355158 139355198 -57840234 + (CCTTG)n Simple_repeat Simple_repeat 2 41 0 5 1648 424 258 59 29 chr1 139355215 139355419 -57840013 - L1MB1 LINE L1 -578 5590 5381 5 1648 1952 269 80 108 chr1 139355442 139356434 -57838998 - L1MB1 LINE L1 -815 5331 4451 5 1648 1152 68 0 0 chr1 139356434 139356580 -57838852 - B1_Mus2 SINE Alu 0 147 2 5 1648 1952 267 79 111 chr1 139356580 139357349 -57838083 - L1MB1 LINE L1 -1690 4450 3611 5 1648 1161 226 33 97 chr1 139357598 139358071 -57837361 + RMER1B Other Other 50 452 -614 5 1648 287 299 68 43 chr1 139358071 139358232 -57837200 - MLT2B4 LTR ERVL -391 165 1 5 1648 333 265 109 3 chr1 139358310 139358470 -57836962 - L1MD LINE L1 -2424 3722 3532 5 1648 316 246 92 8 chr1 139358728 139358843 -57836589 + Tigger7 DNA MER2_type 2259 2383 -108 5 1648 1405 196 29 11 chr1 139358843 139359116 -57836316 + MTC LTR MaLR 1 278 -143 5 1648 657 146 0 0 chr1 139359112 139359208 -57836224 - ORR1B2 LTR MaLR -44 323 228 5 1648 2193 231 29 33 chr1 139359233 139359748 -57835684 + RMER19C LTR ERVK 98 610 -1 5 1648 1025 207 47 9 chr1 139359752 139359967 -57835465 - ORR1B2 LTR MaLR -137 230 8 5 1648 530 361 54 30 chr1 139360073 139360370 -57835062 + LTR16B2 LTR ERVL 67 370 -92 5 1648 277 305 11 0 chr1 139361930 139362025 -57833407 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 5 1648 249 337 82 65 chr1 139363644 139363971 -57831461 - MTE2b LTR MaLR -38 341 6 5 1648 245 296 50 20 chr1 139363997 139364097 -57831335 - MIR SINE MIR -107 155 53 5 1648 216 0 0 0 chr1 139364454 139364478 -57830954 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1648 927 27 0 0 chr1 139364478 139364587 -57830845 + (GA)n Simple_repeat Simple_repeat 1 110 0 5 1648 811 192 27 154 chr1 139364865 139365234 -57830198 - RLTRETN_Mm LTR ERVK 0 322 1 5 1648 222 325 100 50 chr1 139365419 139365539 -57829893 - MIR SINE MIR -83 179 54 5 1648 887 325 93 16 chr1 139366025 139366347 -57829085 - MLT1A0 LTR MaLR -2 363 17 5 1648 395 324 17 67 chr1 139366756 139366936 -57828496 - MIRb SINE MIR -47 215 46 5 1648 4792 83 21 1 chr1 139366943 139367642 -57827790 + L1_Mus3 LINE L1 5901 6613 -25 5 1648 3268 66 26 0 chr1 139367642 139368068 -57827364 + L1_Mus1 LINE L1 6131 6567 0 5 1648 204 231 0 0 chr1 139368196 139368248 -57827184 + A-rich Low_complexity Low_complexity 1 52 0 5 1648 378 161 0 0 chr1 139369168 139369261 -57826171 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 1648 27 92 0 0 chr1 139369797 139369873 -57825559 + AT_rich Low_complexity Low_complexity 1 76 0 5 1648 180 0 0 0 chr1 139371262 139371282 -57824150 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1648 210 209 0 0 chr1 139372313 139372356 -57823076 - B1F SINE Alu -60 89 47 5 1648 524 223 40 26 chr1 139373427 139373579 -57821853 + Lx7 LINE L1 7533 7686 -10 5 1648 1755 140 117 15 chr1 139374319 139374652 -57820780 + ORR1B2 LTR MaLR 1 367 0 5 1648 191 339 63 16 chr1 139375066 139375192 -57820240 + L2c LINE L2 3018 3149 -238 5 1648 2075 258 65 7 chr1 139375827 139376378 -57819054 - Lx5 LINE L1 -3 7047 6465 5 1648 1014 82 8 0 chr1 139376378 139376512 -57818920 - RLTR27 LTR ERVK 0 309 175 5 1648 1930 39 11 26 chr1 139376496 139376761 -57818671 - RLTR10A LTR ERVK -150 261 1 5 1648 3985 187 21 9 chr1 139376762 139377811 -57817621 - Lx5 LINE L1 -581 6469 5391 5 1648 3576 158 29 10 chr1 139377820 139378281 -57817151 + L1_Mur2 LINE L1 3717 4178 -1699 5 1648 258 56 0 0 chr1 139378281 139378317 -57817115 + (ATATG)n Simple_repeat Simple_repeat 3 38 0 5 1648 3576 158 29 10 chr1 139378317 139378551 -57816881 + L1_Mur2 LINE L1 4179 4423 -1454 5 1648 2303 200 15 2 chr1 139378552 139379072 -57816360 + L1_Mur2 LINE L1 4819 5345 -532 5 1648 1205 125 0 25 chr1 139379332 139379373 -57816059 - B2_Mm2 SINE B2 -1 194 158 5 1648 357 24 0 0 chr1 139379373 139379415 -57816017 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 1648 1205 125 0 25 chr1 139379415 139379570 -57815862 - B2_Mm2 SINE B2 -38 157 3 5 1648 441 228 0 12 chr1 139379573 139379653 -57815779 + B3 SINE B2 52 130 -86 5 1648 279 231 0 0 chr1 139379734 139379786 -57815646 + B1F2 SINE Alu 14 65 -84 5 1648 687 233 0 0 chr1 139379920 139380053 -57815379 + B1_Mur1 SINE Alu 5 137 -12 5 1648 223 284 71 27 chr1 139380995 139381107 -57814325 - L3 LINE CR1 -1574 2915 2799 5 1648 1179 68 0 0 chr1 139381420 139381567 -57813865 - B1_Mus1 SINE Alu 0 148 2 5 1648 809 214 55 6 chr1 139381573 139381756 -57813676 - B3A SINE B2 -6 192 1 5 1648 301 284 147 0 chr1 139382328 139382444 -57812988 - L1MDa LINE L1 -4374 2259 2127 5 1648 459 333 19 12 chr1 139382629 139382887 -57812545 + L1M4 LINE L1 3519 3778 -2368 5 1648 189 0 0 0 chr1 139382887 139382908 -57812524 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1648 1039 290 70 20 chr1 139383012 139383599 -57811833 + L1M4 LINE L1 4178 4793 -1353 5 1648 1559 222 9 20 chr1 139383607 139383975 -57811457 + MT2A LTR ERVL 3 493 -108 5 1648 407 19 19 0 chr1 139384000 139384052 -57811380 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1648 394 337 40 10 chr1 139384094 139384397 -57811035 + L1M4 LINE L1 4804 5115 -1031 5 1648 242 346 0 13 chr1 139385654 139385733 -57809699 + MTEa LTR MaLR 201 278 -101 5 1648 403 305 25 17 chr1 139385739 139385879 -57809553 + MTEa LTR MaLR 239 379 0 5 1648 1707 338 120 47 chr1 139385893 139387085 -57808347 + MTEa-int LTR MaLR 20 1387 -193 5 1648 184 318 103 48 chr1 139387239 139387404 -57808028 + MIR SINE MIR 12 185 -77 5 1648 263 323 11 92 chr1 139387681 139387855 -57807577 + MER82 DNA MER2_type 300 459 -194 5 1648 2949 165 19 0 chr1 139387881 139388413 -57807019 - Lx4A LINE L1 -689 6369 5828 5 1648 1546 103 267 0 chr1 139388465 139388746 -57806686 - Lx4A LINE L1 -1214 5844 5489 5 1648 299 25 25 0 chr1 139388772 139388812 -57806620 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 5 1648 1168 231 151 16 chr1 139388838 139389150 -57806282 - ORR1D1 LTR MaLR -20 354 1 5 1648 231 314 5 146 chr1 139389436 139389641 -57805791 + B4 SINE B4 2 177 -115 5 1648 870 76 0 0 chr1 139389710 139389828 -57805604 + ORR1A2 LTR MaLR 210 327 0 5 1648 659 335 10 16 chr1 139389832 139390026 -57805406 + ID_B1 SINE B4 12 204 -20 6 1648 235 260 21 10 chr1 139390552 139390649 -57804783 - L1MD LINE L1 -2065 4081 3984 6 1648 265 289 39 0 chr1 139390903 139391031 -57804401 - L1MEc LINE L1 -2292 4027 3895 6 1648 854 330 162 53 chr1 139391128 139391825 -57803607 + ORR1E-int LTR MaLR 753 1528 -52 6 1648 255 363 86 89 chr1 139391825 139392185 -57803247 + ORR1E LTR MaLR 1 359 0 6 1648 264 30 0 0 chr1 139392288 139392321 -57803111 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1648 582 313 54 18 chr1 139392349 139392626 -57802806 - B4A SINE B4 -4 288 2 6 1648 28 61 0 0 chr1 139392953 139393002 -57802430 + AT_rich Low_complexity Low_complexity 1 49 0 6 1648 876 331 84 9 chr1 139393124 139393886 -57801546 - L1MEc LINE L1 -3229 3090 2266 6 1648 770 281 310 22 chr1 139393918 139394389 -57801043 - Lx7 LINE L1 -682 6791 6180 6 1648 354 23 0 0 chr1 139394389 139394432 -57801000 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1648 770 257 147 21 chr1 139394432 139394463 -57800969 - Lx7 LINE L1 -1294 6179 6149 6 1648 3310 59 56 7 chr1 139394464 139394908 -57800524 - L1Md_F2 LINE L1 -4 6578 6113 6 1648 2060 61 4 0 chr1 139394908 139395188 -57800244 + L1_Mm LINE L1 4754 5034 -849 6 1648 525 253 146 37 chr1 139395205 139395369 -57800063 - B3 SINE B2 -6 210 29 6 1648 2414 289 68 11 chr1 139395403 139396628 -57798804 - Lx7 LINE L1 -1574 6122 4832 6 1648 25 0 0 0 chr1 139396667 139396692 -57798740 + AT_rich Low_complexity Low_complexity 1 25 0 6 1648 32 0 0 0 chr1 139396879 139396911 -57798521 + AT_rich Low_complexity Low_complexity 1 32 0 6 1648 289 277 59 66 chr1 139399331 139399483 -57795949 + MERVL_2A-int LTR ERVL 2460 2656 -3105 6 1648 339 25 0 0 chr1 139399796 139399836 -57795596 + (TAGG)n Simple_repeat Simple_repeat 2 41 0 6 1648 256 285 278 6 chr1 139402069 139402249 -57793183 - MIRb SINE MIR -33 235 7 6 1648 198 220 98 33 chr1 139402919 139402980 -57792452 - L2 LINE L2 -941 2478 2414 6 1648 1159 68 0 7 chr1 139402982 139403130 -57792302 - B1_Mus2 SINE Alu 0 147 1 6 1648 467 301 12 31 chr1 139403802 139403963 -57791469 - RSINE1 SINE B4 -2 163 6 6 1648 598 309 12 29 chr1 139405352 139405522 -57789910 + B3A SINE B2 2 168 -30 6 1648 409 301 26 26 chr1 139405612 139405728 -57789704 + RSINE1 SINE B4 48 163 -2 6 1648 390 121 0 0 chr1 139405745 139405811 -57789621 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1648 33 0 0 0 chr1 139406075 139406108 -57789324 + AT_rich Low_complexity Low_complexity 1 33 0 6 1648 1143 276 32 35 chr1 139407679 139408017 -57787415 + ORR1D2 LTR MaLR 1 337 -33 6 1648 796 319 77 9 chr1 139408380 139409078 -57786354 - L1M3e LINE L1 -1310 5790 5045 6 1648 457 231 45 18 chr1 139409083 139409193 -57786239 + B3 SINE B2 100 212 -4 6 1648 3053 137 24 31 chr1 139409452 139409963 -57785469 - Lx4A LINE L1 -2 7056 6550 6 1648 2507 130 16 7 chr1 139409964 139410399 -57785033 + Lx4A LINE L1 5910 6348 -710 6 1648 260 313 106 97 chr1 139410654 139410891 -57784541 + MTD LTR MaLR 115 405 -14 6 1648 399 305 41 35 chr1 139411457 139411627 -57783805 - L1M3e LINE L1 -5520 1510 1340 6 1648 266 241 69 20 chr1 139411751 139411868 -57783564 + B3A SINE B2 1 125 -70 6 1648 216 0 0 0 chr1 139411903 139411927 -57783505 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1648 688 254 108 106 chr1 139413621 139413948 -57781484 + Lx7 LINE L1 7023 7357 -339 6 1648 509 0 16 0 chr1 139413948 139414009 -57781423 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6 1648 777 194 72 28 chr1 139414009 139414242 -57781190 + Lx7 LINE L1 7358 7695 -1 6 1648 238 26 0 49 chr1 139414675 139414716 -57780716 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1648 931 273 5 0 chr1 139415152 139415361 -57780071 + B3 SINE B2 2 211 -5 6 1648 681 101 0 0 chr1 139415669 139415768 -57779664 + (TC)n Simple_repeat Simple_repeat 2 100 0 6 1648 858 298 10 48 chr1 139415813 139416102 -57779330 - B4A SINE B4 -14 278 1 6 1648 7808 63 0 1 chr1 139416102 139417730 -57777702 - L1_Mus1 LINE L1 0 6567 4971 6 1648 675 286 74 12 chr1 139418719 139418963 -57776469 - Lx7 LINE L1 -572 7124 6866 6 1648 591 112 0 0 chr1 139420063 139420152 -57775280 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 6 1648 794 294 76 36 chr1 139420522 139421259 -57774173 - L1MB2 LINE L1 -3 6168 5426 6 1648 368 299 169 0 chr1 139421260 139421549 -57773883 - L1_Rod LINE L1 -2153 1761 1434 6 1648 649 255 30 35 chr1 139421628 139421827 -57773605 - B3A SINE B2 0 198 1 6 1648 4302 129 30 27 chr1 139421832 139422754 -57772678 - L1_Mus3 LINE L1 -12 6626 5666 6 1648 25 31 0 0 chr1 139422756 139422788 -57772644 + AT_rich Low_complexity Low_complexity 1 32 0 6 1648 743 206 0 49 chr1 139422980 139423164 -57772268 - L1_Mur3 LINE L1 -2546 3334 3160 6 1648 990 197 53 8 chr1 139423164 139423410 -57772022 + Lx5 LINE L1 3945 4201 -1679 6 1648 34106 54 9 5 chr1 139423438 139428696 -57766736 + L1Md_T LINE L1 307 5586 -297 6 1648 7931 57 2 0 chr1 139428696 139429689 -57765743 + L1Md_T LINE L1 5587 6581 -1 6 1648 5548 221 87 42 chr1 139429768 139432411 -57763021 + Lx5 LINE L1 4290 7031 -19 6 1648 23 33 0 0 chr1 139432425 139432455 -57762977 + AT_rich Low_complexity Low_complexity 1 30 0 6 1648 1318 91 0 46 chr1 139432892 139433087 -57762345 + B2_Mm2 SINE B2 2 187 -8 6 1648 1170 155 10 0 chr1 139433316 139433510 -57761922 - ORR1A4-int LTR MaLR -1642 321 126 6 1648 1849 158 3 19 chr1 139433508 139433825 -57761607 - ORR1A4 LTR MaLR -12 317 6 6 1648 180 111 0 0 chr1 139434679 139434706 -57760726 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 6 1648 768 268 21 33 chr1 139436150 139436393 -57759039 - MER121 Unknown Unknown -161 251 12 6 1648 396 244 33 16 chr1 139436578 139436699 -57758733 - MER106A DNA MER1_type -4 232 110 6 1648 306 246 0 0 chr1 139436863 139436932 -57758500 + MER20 DNA MER1_type 99 167 -52 6 1648 207 325 41 0 chr1 139437425 139437514 -57757918 + MIRb SINE MIR 168 260 -2 6 1648 254 229 21 10 chr1 139438622 139438719 -57756713 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 1648 22 0 0 0 chr1 139438719 139438741 -57756691 + AT_rich Low_complexity Low_complexity 1 22 0 6 1648 196 50 100 0 chr1 139438742 139438782 -57756650 + (TTAA)n Simple_repeat Simple_repeat 1 44 0 6 1648 49 84 0 0 chr1 139438782 139438901 -57756531 + AT_rich Low_complexity Low_complexity 1 119 0 6 1648 1194 126 121 0 chr1 139441065 139441264 -57754168 + URR1A DNA MER1_type 4 226 0 6 1648 1915 162 15 3 chr1 139441518 139441853 -57753579 - Lx2 LINE L1 -80 6917 6579 6 1648 4028 52 14 0 chr1 139443487 139443989 -57751443 - L1Md_F3 LINE L1 0 6584 6076 6 1648 1797 111 29 29 chr1 139444057 139444364 -57751068 + Lx2A1 LINE L1 6696 7002 -6 6 1648 277 339 0 0 chr1 139444378 139444440 -57750992 - PB1 SINE Alu -65 62 1 6 1648 822 315 59 44 chr1 139445919 139446271 -57749161 + L1M2 LINE L1 4603 4966 -1177 6 1648 749 266 84 58 chr1 139446271 139446618 -57748814 + ORR1E LTR MaLR 1 356 -3 6 1648 822 315 59 44 chr1 139446618 139446923 -57748509 + L1M2 LINE L1 4967 5270 -873 6 1648 1539 40 5 34 chr1 139446951 139447158 -57748274 + L1_Mus1 LINE L1 6367 6567 0 6 1648 665 263 63 46 chr1 139447163 139447608 -57747824 + L1M2 LINE L1 5326 5786 -511 6 1648 290 194 14 0 chr1 139447610 139447682 -57747750 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1648 23 0 0 0 chr1 139447781 139447804 -57747628 + AT_rich Low_complexity Low_complexity 1 23 0 6 1648 227 222 0 0 chr1 139447963 139448008 -57747424 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1648 245 259 148 0 chr1 139449046 139449154 -57746278 + L2a LINE L2 3303 3426 0 6 1648 180 234 0 0 chr1 139452489 139452536 -57742896 + GA-rich Low_complexity Low_complexity 3 49 0 6 1648 357 237 13 26 chr1 139452807 139452885 -57742547 - BC1_Mm scRNA scRNA -75 77 1 6 1648 383 142 225 58 chr1 139452985 139453105 -57742327 + ORR1D1 LTR MaLR 3 142 -232 6 1648 4058 51 14 0 chr1 139453115 139453627 -57741805 - L1Md_F2 LINE L1 0 6582 6064 6 1648 13602 32 1 0 chr1 139453630 139456031 -57739401 - L1Md_T LINE L1 0 6582 4179 6 1648 615 266 165 5 chr1 139456031 139456231 -57739201 + ORR1D1 LTR MaLR 143 374 0 6 1648 591 305 50 60 chr1 139456480 139456679 -57738753 + B3A SINE B2 2 198 0 6 1648 23 0 0 0 chr1 139458467 139458490 -57736942 + GC_rich Low_complexity Low_complexity 1 23 0 6 1648 936 62 0 0 chr1 139459211 139459339 -57736093 + L1_Mus2 LINE L1 6434 6561 -5 6 1648 875 132 49 128 chr1 139459471 139459697 -57735735 + ORR1A4 LTR MaLR 1 208 -121 6 1649 275 281 61 30 chr1 139463317 139463416 -57732016 - RMER10A LTR ERVL -27 415 314 6 1649 300 316 41 132 chr1 139463456 139463773 -57731659 - RMER10A LTR ERVL -137 305 18 6 1649 28 29 0 0 chr1 139463929 139463964 -57731468 + AT_rich Low_complexity Low_complexity 1 35 0 6 1649 232 45 43 43 chr1 139464057 139464103 -57731329 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 6 1649 391 282 151 52 chr1 139464143 139464315 -57731117 - Lx7 LINE L1 -381 7315 7127 6 1649 2201 193 240 8 chr1 139465139 139465630 -57729802 - RMER20B LTR ERVK 0 627 23 6 1649 300 295 0 16 chr1 139465648 139465710 -57729722 - RSINE1 SINE B4 -102 63 3 6 1649 1262 196 0 34 chr1 139465753 139465986 -57729446 - URR1B DNA MER1_type 0 225 1 6 1649 183 100 0 0 chr1 139467808 139467838 -57727594 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1649 320 265 65 50 chr1 139468406 139468545 -57726887 + MIRc SINE MIR 91 231 -37 6 1649 279 36 73 0 chr1 139469957 139470012 -57725420 + L1Md_F3 LINE L1 6526 6584 0 6 1649 225 154 26 0 chr1 139470337 139470376 -57725056 + ID_B1 SINE B4 176 215 -9 6 1649 216 192 74 37 chr1 139470376 139470387 -57725045 + PB1D7 SINE Alu 69 120 0 6 1649 21 0 0 0 chr1 139471723 139471744 -57723688 + AT_rich Low_complexity Low_complexity 1 21 0 6 1649 282 165 48 10 chr1 139471847 139471951 -57723481 + (TA)n Simple_repeat Simple_repeat 1 108 0 6 1649 28 0 0 0 chr1 139473315 139473343 -57722089 + AT_rich Low_complexity Low_complexity 1 28 0 6 1649 1077 234 115 53 chr1 139473791 139474129 -57721303 - ORR1D2 LTR MaLR -7 363 5 6 1649 662 263 92 62 chr1 139474527 139474754 -57720678 - ORR1D2 LTR MaLR -37 333 100 6 1649 543 314 0 21 chr1 139475410 139475550 -57719882 - ID_B1 SINE B4 0 224 88 6 1649 6819 11 47 10 chr1 139475870 139476662 -57718770 + RLTR13B2 LTR ERVK 1 821 -1 7 1649 791 229 36 57 chr1 139476814 139476973 -57718459 + B3A SINE B2 9 164 -34 7 1649 297 0 0 0 chr1 139476973 139477006 -57718426 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1649 791 229 36 57 chr1 139477006 139477040 -57718392 + B3A SINE B2 165 198 0 7 1649 323 23 0 22 chr1 139477718 139477763 -57717669 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1649 2236 124 110 0 chr1 139478311 139478666 -57716766 + ORR1B1 LTR MaLR 1 394 0 7 1649 235 330 209 0 chr1 139479049 139479164 -57716268 + MTE2a LTR MaLR 6 144 -235 7 1649 278 270 0 0 chr1 139479161 139479224 -57716208 + MTE2a LTR MaLR 314 376 -3 7 1649 1190 283 51 57 chr1 139479228 139479863 -57715569 + MTE2a-int LTR MaLR 1 626 -744 7 1649 543 285 77 0 chr1 139479898 139480028 -57715404 - RSINE1 SINE B4 -22 143 4 7 1649 509 0 16 0 chr1 139480040 139480101 -57715331 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1649 1196 98 55 0 chr1 139480149 139480332 -57715100 + B2_Mm2 SINE B2 3 195 0 7 1649 660 284 167 19 chr1 139481397 139481720 -57713712 - MLT1B LTR MaLR 0 390 20 7 1649 480 48 0 0 chr1 139481758 139481821 -57713611 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1649 335 89 0 18 chr1 139481879 139481936 -57713496 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1649 332 305 30 117 chr1 139482342 139482382 -57713050 - B2_Mm2 SINE B2 0 195 166 7 1649 369 0 0 0 chr1 139482382 139482423 -57713009 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1649 585 305 30 117 chr1 139482423 139482579 -57712853 - B3 SINE B2 -40 176 16 7 1649 588 209 76 23 chr1 139482582 139482714 -57712718 - B1_Mur2 SINE Alu -1 148 10 7 1649 264 237 79 0 chr1 139482794 139482870 -57712562 - L1MA9 LINE L1 -78 6234 6153 7 1649 3157 162 45 37 chr1 139483080 139483701 -57711731 - RMER20B LTR ERVK -1 626 1 7 1649 525 289 178 84 chr1 139484099 139484793 -57710639 + RMER13A LTR ERVK 1 769 -139 7 1649 1173 162 34 112 chr1 139485494 139485814 -57709618 + RLTR11A LTR ERVK 93 387 -141 7 1649 741 299 6 6 chr1 139486185 139486360 -57709072 - B4 SINE B4 -95 197 23 7 1649 269 227 45 96 chr1 139486360 139486516 -57708916 - L1M3 LINE L1 -1021 5119 4972 7 1649 472 251 139 20 chr1 139486732 139486984 -57708448 - L1M3 LINE L1 -1188 4952 4671 7 1649 297 300 78 20 chr1 139487550 139487703 -57707729 + MIR SINE MIR 81 242 -20 7 1649 299 321 40 127 chr1 139489324 139489474 -57705958 + B1F SINE Alu 3 139 -10 7 1649 934 225 13 18 chr1 139489475 139489701 -57705731 - URR1B DNA MER1_type 0 225 1 7 1649 225 279 0 14 chr1 139489705 139489774 -57705658 + A-rich Low_complexity Low_complexity 3 70 0 7 1649 23 33 0 0 chr1 139489789 139489819 -57705613 + AT_rich Low_complexity Low_complexity 1 30 0 7 1649 2949 90 5 2 chr1 139489821 139490232 -57705200 - L1_Mus3 LINE L1 -7 6631 6220 7 1649 231 282 76 42 chr1 139491056 139491221 -57704211 - MIRb SINE MIR -88 180 4 7 1649 472 164 0 25 chr1 139491719 139491838 -57703594 - L1_Mur3 LINE L1 -2141 3739 3624 7 1649 375 179 35 35 chr1 139491838 139491925 -57703507 - MTC LTR MaLR 0 421 335 7 1649 495 0 0 0 chr1 139492095 139492150 -57703282 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1649 648 284 6 2 chr1 139492190 139492393 -57703039 - Lx7 LINE L1 -397 7299 7110 7 1649 513 0 0 0 chr1 139492522 139492579 -57702853 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 7 1649 3291 271 48 15 chr1 139492612 139492658 -57702774 + Lx7 LINE L1 6167 6211 -1485 7 1649 414 0 0 0 chr1 139492658 139492704 -57702728 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1649 333 0 0 0 chr1 139492705 139492742 -57702690 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1649 3291 271 48 15 chr1 139492742 139493609 -57701823 + Lx7 LINE L1 6212 7107 -589 7 1649 312 304 101 21 chr1 139493872 139493937 -57701495 - L1M2 LINE L1 -3185 2958 2893 7 1649 2682 137 7 28 chr1 139493937 139494374 -57701058 + RLTR23 LTR ERV1 1 428 -2 7 1649 312 304 101 21 chr1 139494374 139494496 -57700936 - L1M2 LINE L1 -3251 2892 2757 7 1649 266 300 11 0 chr1 139494506 139494596 -57700836 - L1M2 LINE L1 -3526 2617 2527 7 1649 2145 288 58 8 chr1 139495048 139495691 -57699741 + RCHARR1 DNA MER1_type 1 675 -299 7 1649 6492 152 7 25 chr1 139495691 139496956 -57698476 - L1_Mur2 LINE L1 -1496 4381 3140 7 1649 5643 169 5 1 chr1 139496954 139498028 -57697404 + L1_Mur2 LINE L1 4375 5452 -425 7 1649 4108 122 33 24 chr1 139498029 139498699 -57696733 + Lx LINE L1 5979 6654 0 7 1649 820 247 70 24 chr1 139498703 139499001 -57696431 + RCHARR1 DNA MER1_type 663 974 0 7 1649 28 0 0 0 chr1 139499179 139499207 -57696225 + AT_rich Low_complexity Low_complexity 1 28 0 7 1649 762 221 45 0 chr1 139499483 139499637 -57695795 + B3 SINE B2 2 162 -54 7 1649 284 361 0 14 chr1 139499647 139499720 -57695712 - RMER20B LTR ERVK -28 599 528 7 1649 990 215 155 25 chr1 139499721 139499998 -57695434 - RMER20B LTR ERVK -32 595 283 7 1649 697 238 164 26 chr1 139500000 139500311 -57695121 - RMER20B LTR ERVK -347 280 10 1 1649 255 133 0 0 chr1 139500312 139500357 -57695075 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 1649 24 85 0 0 chr1 139500373 139500432 -57695000 + AT_rich Low_complexity Low_complexity 1 59 0 3 1649 673 318 29 29 chr1 139502121 139502367 -57693065 + B4 SINE B4 2 247 -45 4 1649 25 0 0 0 chr1 139502463 139502488 -57692944 + AT_rich Low_complexity Low_complexity 1 25 0 5 1649 642 13 0 0 chr1 139502729 139502804 -57692628 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1649 423 320 84 51 chr1 139503562 139503776 -57691656 + MER2 DNA MER2_type 122 342 -3 7 1649 251 259 0 0 chr1 139503817 139503871 -57691561 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1649 382 343 7 15 chr1 139503990 139504126 -57691306 + Tigger1 DNA MER2_type 1 135 -2283 9 1649 709 240 6 11 chr1 139504176 139504357 -57691075 + Tigger1 DNA MER2_type 2225 2404 -14 9 1649 1008 256 181 15 chr1 139504757 139505094 -57690338 - MTD LTR MaLR -14 405 13 1 1649 540 77 0 0 chr1 139506109 139506187 -57689245 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1649 366 309 17 76 chr1 139506340 139506354 -57689078 - PB1D10 SINE Alu 0 117 104 1 1649 540 0 0 0 chr1 139506354 139506414 -57689018 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1649 366 309 17 76 chr1 139506414 139506518 -57688914 - PB1D10 SINE Alu -14 103 6 1 1649 245 270 9 65 chr1 139506425 139506532 -57688900 + YREP_Mm Unknown Unknown 224 324 -1488 1 1649 319 202 10 10 chr1 139506640 139506740 -57688692 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1649 1146 277 102 20 chr1 139506857 139507355 -57688077 + Lx8 LINE L1 6930 7468 -5 1 1649 35017 31 2 7 chr1 139507478 139512648 -57682784 + L1Md_A LINE L1 450 5586 -297 1 1649 8478 30 2 0 chr1 139512648 139513642 -57681790 + L1Md_A LINE L1 5587 6582 0 1 1649 343 281 86 21 chr1 139513680 139513913 -57681519 + L1MB4 LINE L1 5024 5271 -875 1 1649 656 308 49 22 chr1 139513945 139514466 -57680966 + L1MB4 LINE L1 5285 5820 -363 1 1649 512 278 0 43 chr1 139514476 139514664 -57680768 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1649 1923 236 45 21 chr1 139514748 139515263 -57680169 + RLTR11A2 LTR ERVK 1 527 0 2 1649 225 139 0 0 chr1 139515334 139515377 -57680055 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1649 639 292 11 39 chr1 139515379 139515557 -57679875 - B4A SINE B4 -116 176 4 2 1649 278 294 135 25 chr1 139515592 139515829 -57679603 + L1MB4 LINE L1 5851 6113 -67 1 1649 607 299 143 30 chr1 139515829 139516129 -57679303 - MT2A LTR ERVL -6 527 194 2 1649 254 300 12 0 chr1 139516187 139516267 -57679165 - MTEa LTR MaLR -293 86 6 2 1649 276 30 0 0 chr1 139516293 139516326 -57679106 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1649 236 358 88 60 chr1 139517350 139517736 -57677696 - LTR33A_ LTR ERVL -96 435 39 2 1649 387 0 0 0 chr1 139517996 139518039 -57677393 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1649 1081 87 0 0 chr1 139518039 139518177 -57677255 - B1_Mus1 SINE Alu -9 139 2 2 1649 2773 52 9 3 chr1 139518573 139518917 -57676515 - ORR1A1 LTR MaLR 0 346 1 2 1649 288 0 0 0 chr1 139519411 139519443 -57675989 + (TTA)n Simple_repeat Simple_repeat 1 32 0 3 1649 375 179 38 25 chr1 139519500 139519580 -57675852 - RMER15 LTR ERVL 0 575 495 3 1649 979 242 136 115 chr1 139519595 139520117 -57675315 + MT2A LTR ERVL 1 533 0 3 1649 5711 174 37 30 chr1 139520117 139521284 -57674148 + MERVL_2A-int LTR ERVL 1 1175 -4586 3 1649 2115 54 1 1 chr1 139521284 139521564 -57673868 - Lx5 LINE L1 -1368 5682 5404 3 1649 7951 40 3 0 chr1 139521564 139522518 -57672914 + L1Md_F2 LINE L1 5624 6580 -2 3 1649 2818 239 26 33 chr1 139522521 139523656 -57671776 + MERVL_2A-int LTR ERVL 1038 2162 -3323 3 1649 11495 190 55 24 chr1 139523642 139526062 -57669370 + MERVL_2A-int LTR ERVL 2967 5461 -300 3 1649 279 122 0 0 chr1 139526155 139526196 -57669236 + RMER1B Other Other 40 80 -986 3 1649 743 201 0 0 chr1 139526194 139526349 -57669083 + RMER1B Other Other 719 915 -151 3 1649 1518 228 151 55 chr1 139526397 139526921 -57668511 - RMER4B LTR ERVK -11 574 1 3 1649 229 164 18 0 chr1 139526921 139526976 -57668456 + RMER1B Other Other 997 1052 -14 3 1649 610 219 76 13 chr1 139526977 139527213 -57668219 + MERVL_2A-int LTR ERVL 5440 5690 -71 3 1649 244 224 0 15 chr1 139527224 139527292 -57668140 + ORR1A3-int LTR MaLR 573 639 -1324 3 1649 271 196 0 0 chr1 139527292 139527348 -57668084 + MERVL_2A-int LTR ERVL 5706 5761 0 3 1649 940 227 64 103 chr1 139527348 139527723 -57667709 + MT2A LTR ERVL 1 483 -101 3 1649 1670 279 36 18 chr1 139528196 139528755 -57666677 + Lx8 LINE L1 6747 7315 -158 3 1649 3766 50 28 0 chr1 139528767 139529226 -57666206 - L1_Mus1 LINE L1 0 6567 6096 4 1649 32 0 0 0 chr1 139529354 139529386 -57666046 + AT_rich Low_complexity Low_complexity 1 32 0 4 1649 490 239 71 21 chr1 139529467 139529608 -57665824 - B1_Mur1 SINE Alu 0 149 2 4 1649 1476 206 94 14 chr1 139529722 139530072 -57665360 - ORR1C1 LTR MaLR 0 378 1 4 1649 247 257 56 28 chr1 139530419 139530491 -57664941 + MTB_Mm LTR MaLR 23 96 -311 4 1649 368 352 33 46 chr1 139530480 139530632 -57664800 + RSINE1 SINE B4 15 164 -1 4 1649 650 259 34 27 chr1 139530660 139530807 -57664625 + B1_Mur2 SINE Alu 1 148 -1 4 1649 240 35 0 0 chr1 139531582 139531611 -57663821 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 4 1649 1228 95 23 0 chr1 139534034 139534388 -57661044 + (TTTC)n Simple_repeat Simple_repeat 1 362 0 4 1649 898 139 0 17 chr1 139534388 139534564 -57660868 + CT-rich Low_complexity Low_complexity 2 174 0 4 1649 304 317 136 14 chr1 139536201 139536348 -57659084 + MIRb SINE MIR 13 177 -91 5 1649 293 197 66 0 chr1 139536483 139536559 -57658873 - Lx5 LINE L1 -3 7047 6967 5 1649 314 255 191 0 chr1 139536615 139536756 -57658676 + MLT1B LTR MaLR 223 390 0 5 1649 843 86 0 0 chr1 139537118 139537235 -57658197 + (TTTCC)n Simple_repeat Simple_repeat 4 120 0 5 1649 23 33 0 0 chr1 139538565 139538595 -57656837 + AT_rich Low_complexity Low_complexity 1 30 0 5 1649 1298 243 70 25 chr1 139539442 139539843 -57655589 + MTD LTR MaLR 1 419 0 5 1649 492 18 0 0 chr1 139540022 139540079 -57655353 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 5 1649 236 323 65 0 chr1 139540083 139540145 -57655287 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 5 1649 223 293 0 0 chr1 139543195 139543253 -57652179 + GA-rich Low_complexity Low_complexity 4 61 0 5 1649 6218 62 6 4 chr1 139543533 139544337 -57651095 - L1Md_F2 LINE L1 -1 6581 5776 5 1649 318 148 0 0 chr1 139545463 139545517 -57649915 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1649 24 0 0 0 chr1 139545984 139546008 -57649424 + AT_rich Low_complexity Low_complexity 1 24 0 6 1649 369 0 0 0 chr1 139548098 139548139 -57647293 + (TTTTC)n Simple_repeat Simple_repeat 1 41 0 6 1649 1230 92 0 0 chr1 139548142 139548316 -57647116 + (TCTCC)n Simple_repeat Simple_repeat 5 178 0 6 1649 202 336 8 8 chr1 139548565 139548682 -57646750 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1649 449 256 182 15 chr1 139548714 139548912 -57646520 - L1M2 LINE L1 -1584 4559 4329 6 1649 284 77 62 0 chr1 139548919 139548984 -57646448 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1649 489 182 0 0 chr1 139549057 139549156 -57646276 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 1649 393 22 0 0 chr1 139549254 139549300 -57646132 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1649 231 188 0 0 chr1 139549564 139549612 -57645820 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1649 272 208 0 0 chr1 139549721 139549774 -57645658 + RLTR20A LTR ERVK 335 387 -147 7 1649 245 29 29 0 chr1 139549774 139549808 -57645624 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1649 516 231 0 0 chr1 139549810 139549901 -57645531 + RLTR20A LTR ERVK 451 541 0 7 1649 405 335 97 25 chr1 139549920 139550116 -57645316 + L1M2 LINE L1 4760 4969 -1174 7 1649 911 245 143 54 chr1 139550136 139550472 -57644960 + RMER19C LTR ERVK 229 594 -17 7 1649 25 51 0 0 chr1 139552014 139552053 -57643379 + AT_rich Low_complexity Low_complexity 1 39 0 7 1649 2080 181 25 66 chr1 139552061 139552498 -57642934 + MTC LTR MaLR 3 421 0 7 1649 225 108 0 0 chr1 139552538 139552575 -57642857 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 7 1649 752 309 117 92 chr1 139553667 139554189 -57641243 - Charlie13a DNA Charlie -551 963 448 7 1649 662 72 48 0 chr1 139554189 139554314 -57641118 + (CAGA)n Simple_repeat Simple_repeat 2 132 0 7 1649 752 309 117 92 chr1 139554314 139554596 -57640836 - Charlie13a DNA Charlie -1067 447 139 7 1649 447 255 61 0 chr1 139556334 139556432 -57639000 - RSINE1 SINE B4 -59 106 3 7 1649 235 397 45 12 chr1 139556814 139557059 -57638373 - Lx8 LINE L1 -220 7253 7001 8 1649 639 115 7 44 chr1 139557700 139557836 -57637596 + (TATG)n Simple_repeat Simple_repeat 2 132 0 8 1649 440 264 9 9 chr1 139558528 139558635 -57636797 + PB1D10 SINE Alu 10 116 -1 8 1649 576 0 0 0 chr1 139558748 139558812 -57636620 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 1649 263 276 90 20 chr1 139559157 139559257 -57636175 + MTEa LTR MaLR 273 379 0 8 1649 22 0 0 0 chr1 139559422 139559444 -57635988 + AT_rich Low_complexity Low_complexity 1 22 0 8 1649 242 312 98 37 chr1 139559642 139559805 -57635627 - MER106B DNA MER1_type -6 1053 881 8 1649 370 291 34 34 chr1 139560414 139560560 -57634872 - B1F SINE Alu -3 146 1 8 1649 697 282 67 14 chr1 139562743 139562952 -57632480 + MTE2b LTR MaLR 1 220 -159 8 1649 5928 52 0 3 chr1 139563389 139564118 -57631314 - L1Md_F2 LINE L1 -12 6570 5844 8 1649 511 172 22 7 chr1 139564145 139564280 -57631152 - Lx9 LINE L1 -8 7636 7500 9 1649 1053 241 79 12 chr1 139564473 139564704 -57630728 - Lx9 LINE L1 -724 6920 6664 9 1649 1188 75 0 0 chr1 139564704 139564851 -57630581 - B1_Mus2 SINE Alu 0 147 1 9 1649 1053 241 79 12 chr1 139564851 139564947 -57630485 - Lx9 LINE L1 -981 6663 6571 9 1649 482 265 8 15 chr1 139564938 139565072 -57630360 + Lx9 LINE L1 6993 7125 -519 9 1649 443 18 18 0 chr1 139565081 139565137 -57630295 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1649 598 45 11 33 chr1 139565199 139565290 -57630142 + (GA)n Simple_repeat Simple_repeat 1 89 0 9 1649 243 194 75 0 chr1 139565290 139565357 -57630075 - L1M4 LINE L1 -990 5156 5085 9 1649 351 306 46 59 chr1 139566003 139566222 -57629210 - MLT1C LTR MaLR -204 263 48 9 1649 787 329 111 55 chr1 139567217 139567597 -57627835 + MLT1F2 LTR MaLR 57 457 -103 9 1649 32299 70 8 7 chr1 139568133 139570444 -57624988 - L1Md_F2 LINE L1 0 6582 4421 9 1649 3366 57 0 12 chr1 139570444 139570872 -57624560 - L1Md_F2 LINE L1 -13 6569 6147 9 1649 32299 77 5 7 chr1 139570872 139574111 -57621321 - L1Md_F2 LINE L1 -1463 4420 1185 9 1649 1996 17 0 0 chr1 139574111 139574343 -57621089 - L1Md_A LINE L1 0 6582 6351 1 1649 5888 85 8 16 chr1 139574343 139575134 -57620298 - L1Md_F2 LINE L1 -5432 1184 387 9 1649 312 27 0 0 chr1 139575450 139575487 -57619945 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1649 198 0 0 0 chr1 139576044 139576066 -57619366 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1649 231 114 0 0 chr1 139576063 139576098 -57619334 + (CCA)n Simple_repeat Simple_repeat 1 35 0 1 1649 945 283 106 45 chr1 139576099 139576788 -57618644 - L1MA6 LINE L1 -109 6191 5461 1 1649 477 122 0 0 chr1 139578693 139578767 -57616665 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1649 1341 104 7 1 chr1 139578911 139579132 -57616300 - Lx LINE L1 -204 5952 5696 1 1649 1026 135 0 30 chr1 139579132 139579330 -57616102 + Lx LINE L1 6453 6644 -10 1 1649 25 0 0 0 chr1 139579986 139580011 -57615421 + AT_rich Low_complexity Low_complexity 1 25 0 1 1649 189 289 0 0 chr1 139581485 139581530 -57613902 - L2c LINE L2 -6 3420 3376 1 1649 237 390 69 10 chr1 139581660 139581761 -57613671 + L2b LINE L2 3235 3341 -34 1 1649 200 311 108 54 chr1 139582361 139582489 -57612943 + MIRb SINE MIR 53 186 -82 1 1649 269 311 27 80 chr1 139582842 139582954 -57612478 - L2c LINE L2 -10 3377 3272 1 1649 311 167 0 106 chr1 139583159 139583216 -57612216 + A-rich Low_complexity Low_complexity 4 58 0 1 1649 180 0 0 0 chr1 139583216 139583236 -57612196 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 1649 311 167 0 106 chr1 139583236 139583319 -57612113 + A-rich Low_complexity Low_complexity 59 129 0 1 1649 444 19 0 0 chr1 139583912 139583965 -57611467 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1649 336 102 0 0 chr1 139583965 139584014 -57611418 + (GGA)n Simple_repeat Simple_repeat 3 51 0 1 1649 1047 45 11 43 chr1 139584014 139584200 -57611232 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1649 331 267 78 19 chr1 139584735 139584838 -57610594 - MamGypLTR1c LTR Gypsy -632 171 63 1 1649 263 281 0 0 chr1 139585156 139585213 -57610219 + polypyrimidine Low_complexity Low_complexity 4 60 0 1 1649 284 214 0 35 chr1 139585667 139585725 -57609707 - BC1_Mm scRNA scRNA -79 73 18 1 1649 640 261 8 0 chr1 139585754 139585888 -57609544 - B1F1 SINE Alu -5 144 10 1 1649 2653 53 3 0 chr1 139586010 139586347 -57609085 + ORR1A1 LTR MaLR 1 338 -8 1 1649 567 315 111 47 chr1 139587324 139587730 -57607702 - Lx8 LINE L1 -1 7472 7041 1 1649 246 236 28 0 chr1 139588778 139588850 -57606582 - L1MC1 LINE L1 -113 6220 6147 1 1649 580 240 68 0 chr1 139589740 139589886 -57605546 - MLT2B4 LTR ERVL -400 156 1 1 1649 1816 176 42 72 chr1 139590704 139591107 -57604325 - ORR1B1 LTR MaLR -3 391 1 1 1649 620 294 85 5 chr1 139591367 139591555 -57603877 - B3 SINE B2 -8 208 6 1 1650 439 279 90 91 chr1 139591948 139592242 -57603190 + B4 SINE B4 4 292 0 1 1650 268 330 53 32 chr1 139595225 139595319 -57600113 - FAM SINE Alu -78 233 138 1 1650 23 0 0 0 chr1 139595348 139595371 -57600061 + AT_rich Low_complexity Low_complexity 1 23 0 1 1650 743 290 28 19 chr1 139596753 139596964 -57598468 + B3 SINE B2 2 214 -2 1 1650 24 0 0 0 chr1 139596964 139596988 -57598444 + AT_rich Low_complexity Low_complexity 1 24 0 1 1650 462 36 0 0 chr1 139597273 139597329 -57598103 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1650 851 115 7 0 chr1 139597457 139597596 -57597836 + (TCC)n Simple_repeat Simple_repeat 2 141 0 1 1650 456 19 0 0 chr1 139598275 139598328 -57597104 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1650 496 282 117 90 chr1 139598484 139598761 -57596671 - ORR1E LTR MaLR -79 291 3 1 1650 373 271 96 24 chr1 139598804 139599012 -57596420 + L1MA4 LINE L1 5708 5930 -370 1 1650 217 89 44 0 chr1 139599940 139599985 -57595447 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1650 24 32 0 0 chr1 139600144 139600175 -57595257 + AT_rich Low_complexity Low_complexity 1 31 0 1 1650 416 319 35 28 chr1 139600206 139600351 -57595081 - RSINE1 SINE B4 -18 147 2 1 1650 250 299 50 139 chr1 139600364 139600401 -57595031 - B2_Mm1t SINE B2 -9 184 159 1 1650 225 0 0 0 chr1 139600401 139600426 -57595006 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1650 369 0 0 0 chr1 139600426 139600466 -57594966 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1650 455 299 50 139 chr1 139600466 139600629 -57594803 - B3A SINE B2 -35 158 1 1 1650 334 336 29 9 chr1 139600648 139600753 -57594679 + B4A SINE B4 3 109 -183 1 1650 182 307 39 26 chr1 139601033 139601110 -57594322 + L2c LINE L2 3001 3078 -309 1 1650 516 341 55 62 chr1 139602085 139602488 -57592944 - MER97c DNA MER1_type? -361 729 330 1 1650 675 355 128 33 chr1 139602559 139603275 -57592157 + MTEa-int LTR MaLR 679 1576 -4 1 1650 227 310 23 101 chr1 139603279 139603408 -57592024 + MTEa LTR MaLR 1 119 -260 1 1650 233 248 48 57 chr1 139603627 139603748 -57591684 - MER97c DNA MER1_type? -914 176 57 1 1650 1692 210 36 3 chr1 139603748 139604106 -57591326 - ORR1D1 LTR MaLR 0 374 5 1 1650 927 27 0 0 chr1 139604199 139604309 -57591123 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 1 1650 3384 90 19 6 chr1 139604314 139604783 -57590649 + MT2C_Mm LTR ERVL 1 475 0 1 1650 7062 96 12 70 chr1 139604787 139605950 -57589482 + MTA_Mm-int LTR MaLR 3 1098 0 1 1650 2931 66 34 3 chr1 139605950 139606331 -57589101 + MTA_Mm LTR MaLR 1 393 -3 1 1650 211 281 0 63 chr1 139606331 139606351 -57589081 + polypyrimidine Low_complexity Low_complexity 70 89 0 1 1650 203 0 37 0 chr1 139606351 139606378 -57589054 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1650 211 281 0 63 chr1 139606378 139606452 -57588980 + polypyrimidine Low_complexity Low_complexity 1 69 0 1 1650 34 42 0 0 chr1 139606534 139606582 -57588850 + AT_rich Low_complexity Low_complexity 1 48 0 1 1650 39264 6 0 0 chr1 139606597 139613179 -57582253 - L1Md_A LINE L1 0 6582 1 1 1650 584 314 114 66 chr1 139613183 139613801 -57581631 - L1M5 LINE L1 -2168 3975 3449 1 1650 290 232 85 66 chr1 139614127 139614233 -57581199 - MLT1J1 LTR MaLR -296 148 41 1 1650 195 100 0 0 chr1 139614757 139614787 -57580645 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 1 1650 22 35 0 0 chr1 139615513 139615542 -57579890 + AT_rich Low_complexity Low_complexity 1 29 0 1 1650 543 31 0 0 chr1 139615548 139615613 -57579819 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1650 309 411 52 39 chr1 139615652 139615885 -57579547 + MLT1H1 LTR MaLR 35 270 -285 1 1650 14430 91 8 1 chr1 139615917 139618765 -57576667 + L1_Mus1 LINE L1 3699 6567 0 1 1650 528 72 0 0 chr1 139618890 139618959 -57576473 - B2_Mm2 SINE B2 -125 70 2 1 1650 818 54 9 0 chr1 139619797 139619909 -57575523 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1650 626 38 0 0 chr1 139620070 139620150 -57575282 - L1Md_T LINE L1 -337 5546 5467 1 1650 413 58 0 0 chr1 139620147 139620199 -57575233 + L1Md_T LINE L1 5535 5586 -297 1 1650 8053 54 0 0 chr1 139620199 139621195 -57574237 + L1Md_T LINE L1 5587 6582 0 1 1650 451 327 24 24 chr1 139621527 139621696 -57573736 + RLTR16 LTR ERVK 1 169 -336 1 1650 5837 92 56 63 chr1 139621726 139622746 -57572686 + Lx LINE L1 5620 6632 -22 1 1650 363 327 53 48 chr1 139623007 139623235 -57572197 - L3 LINE CR1 -251 4238 4010 1 1650 447 63 0 0 chr1 139623477 139623540 -57571892 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 1 1650 949 320 67 49 chr1 139623890 139624442 -57570990 - Lx8 LINE L1 -381 7092 6531 1 1650 396 0 0 0 chr1 139624673 139624717 -57570715 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1650 378 322 0 0 chr1 139624731 139624818 -57570614 - RSINE1 SINE B4 -76 89 3 1 1650 495 0 0 0 chr1 139625188 139625243 -57570189 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1650 361 286 36 0 chr1 139625257 139625341 -57570091 - RSINE1 SINE B4 -76 89 3 1 1650 309 273 106 18 chr1 139625997 139626164 -57569268 + B3 SINE B2 9 190 -26 1 1650 319 287 129 0 chr1 139626410 139626511 -57568921 - B3 SINE B2 -102 114 1 1 1650 28 0 0 0 chr1 139626918 139626946 -57568486 + AT_rich Low_complexity Low_complexity 1 28 0 1 1650 316 212 182 0 chr1 139627098 139627164 -57568268 + ID_B1 SINE B4 132 209 -15 1 1650 483 123 0 0 chr1 139627164 139627245 -57568187 + (CAGA)n Simple_repeat Simple_repeat 4 84 0 1 1650 2034 334 38 25 chr1 139627491 139628525 -57566907 - Lx9 LINE L1 -215 7429 6383 1 1650 378 0 0 0 chr1 139628548 139628590 -57566842 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1650 183 156 0 0 chr1 139628590 139628622 -57566810 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 1 1650 232 235 20 0 chr1 139630101 139630152 -57565280 + GA-rich Low_complexity Low_complexity 1 52 0 1 1650 498 17 0 0 chr1 139630774 139630833 -57564599 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1650 369 0 0 0 chr1 139630833 139630874 -57564558 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1650 2286 264 198 12 chr1 139631157 139632057 -57563375 + RMER1A Other Other 42 1005 -25 1 1650 336 24 0 0 chr1 139632067 139632108 -57563324 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1650 259 174 57 23 chr1 139632139 139632227 -57563205 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1 1650 8011 26 4 2 chr1 139632471 139633453 -57561979 - L1Md_F3 LINE L1 -14 6570 5587 1 1650 51 42 0 0 chr1 139633755 139633827 -57561605 + AT_rich Low_complexity Low_complexity 1 72 0 1 1650 1423 215 131 9 chr1 139633830 139634159 -57561273 + ORR1D1 LTR MaLR 1 369 -5 1 1650 696 253 12 0 chr1 139634164 139634330 -57561102 + ORR1D1-int LTR MaLR 1 168 -1202 1 1650 3681 146 40 3 chr1 139634332 139634951 -57560481 - RLTR17 LTR ERVK -50 642 1 1 1650 226 154 0 0 chr1 139634955 139634994 -57560438 + ORR1D1-int LTR MaLR 189 227 -1143 1 1650 282 299 172 42 chr1 139635067 139635259 -57560173 + Charlie12 DNA MER1_type 410 626 -2247 1 1650 1029 300 88 60 chr1 139635371 139635974 -57559458 + Charlie12 DNA MER1_type 638 1257 -1616 1 1650 299 333 6 48 chr1 139635978 139636145 -57559287 + RSINE1 SINE B4 3 162 -3 1 1650 2515 294 15 57 chr1 139636193 139637180 -57558252 + Charlie12 DNA MER1_type 1479 2424 -449 1 1650 476 156 11 0 chr1 139637294 139637384 -57558048 + CT-rich Low_complexity Low_complexity 2 92 0 1 1650 345 283 22 0 chr1 139637443 139637535 -57557897 + Charlie12 DNA MER1_type 2422 2515 -358 1 1650 737 185 37 75 chr1 139637787 139637974 -57557458 - B2_Mm2 SINE B2 -10 185 6 1 1650 848 239 56 22 chr1 139637990 139638170 -57557262 - B3 SINE B2 -29 187 2 1 1650 551 282 51 41 chr1 139638196 139638392 -57557040 - B3A SINE B2 0 198 1 1 1650 26 0 0 0 chr1 139640053 139640079 -57555353 + AT_rich Low_complexity Low_complexity 1 26 0 2 1650 1951 109 92 16 chr1 139640501 139640817 -57554615 + Lx LINE L1 6309 6648 -6 2 1650 791 179 11 19 chr1 139641012 139641283 -57554149 + CT-rich Low_complexity Low_complexity 1 268 0 2 1650 183 206 230 14 chr1 139641516 139641590 -57553842 + L3 LINE CR1 2125 2214 -2275 2 1650 1262 309 52 2 chr1 139641684 139642131 -57553301 + Lx8 LINE L1 6221 6689 -784 2 1650 694 265 0 44 chr1 139642144 139642302 -57553130 + B3 SINE B2 1 151 -65 2 1650 259 286 0 0 chr1 139642302 139642372 -57553060 - Lx8 LINE L1 -1200 6273 6204 2 1650 237 282 113 0 chr1 139642465 139642536 -57552896 + Lx8 LINE L1 7161 7239 -234 2 1650 345 279 38 0 chr1 139642545 139642624 -57552808 + B3 SINE B2 130 211 -5 2 1650 1178 272 47 18 chr1 139642643 139643029 -57552403 + Lx8 LINE L1 6716 7112 -361 2 1650 702 318 77 49 chr1 139643806 139644130 -57551302 + MLT1A0 LTR MaLR 22 354 -11 2 1650 217 288 0 70 chr1 139644307 139644378 -57551054 + MIRb SINE MIR 123 188 -80 2 1650 227 345 103 45 chr1 139644693 139644848 -57550584 + MIRb SINE MIR 58 221 -47 2 1650 866 323 27 8 chr1 139645200 139645459 -57549973 - B4A SINE B4 -27 265 2 2 1650 1184 274 100 31 chr1 139645893 139646127 -57549305 + MTD LTR MaLR 1 247 -172 2 1650 866 164 192 21 chr1 139646127 139646246 -57549186 + URR1A DNA MER1_type 1 150 -76 2 1650 501 17 0 0 chr1 139646246 139646304 -57549128 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1650 866 164 192 21 chr1 139646304 139646377 -57549055 + URR1A DNA MER1_type 151 225 -1 2 1650 1184 274 100 31 chr1 139646377 139646533 -57548899 + MTD LTR MaLR 248 418 -1 2 1650 496 276 24 0 chr1 139646552 139646675 -57548757 + MTEa LTR MaLR 1 126 -253 2 1650 481 335 158 23 chr1 139646675 139646900 -57548532 + MT2A LTR ERVL 1 395 -138 2 1650 208 207 17 17 chr1 139648525 139648584 -57546848 + GA-rich Low_complexity Low_complexity 2 60 0 2 1650 607 298 34 74 chr1 139648706 139649180 -57546252 + L1M2 LINE L1 2408 2862 -3281 2 1650 1201 170 148 25 chr1 139649707 139649985 -57545447 - ORR1B1 LTR MaLR -51 343 32 2 1650 273 189 57 0 chr1 139650112 139650165 -57545267 - ORR1B1-int LTR MaLR -270 1100 1045 2 1650 777 274 94 20 chr1 139650352 139650702 -57544730 - MTE2b LTR MaLR 0 379 4 2 1650 325 324 67 26 chr1 139650960 139651379 -57544053 + L1M2 LINE L1 3273 3708 -2432 2 1650 551 183 17 22 chr1 139652730 139652909 -57542523 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1650 1011 253 121 15 chr1 139653095 139653483 -57541949 - Lx7 LINE L1 -437 7259 6831 2 1650 8151 23 0 0 chr1 139653536 139655213 -57540219 - L1Md_T LINE L1 0 6582 4905 2 1650 6755 22 0 0 chr1 139655201 139656025 -57539407 + L1Md_T LINE L1 4082 4905 -978 2 1650 1560 44 0 5 chr1 139656020 139656225 -57539207 - L1Md_F2 LINE L1 -33 6549 6346 2 1650 3281 59 0 0 chr1 139656208 139656631 -57538801 + L1Md_F2 LINE L1 5915 6337 -245 2 1650 362 189 146 36 chr1 139656634 139656744 -57538688 - Lx7 LINE L1 -856 6840 6719 2 1650 915 173 110 113 chr1 139656749 139657017 -57538415 - ORR1B1 LTR MaLR -92 302 4 2 1650 224 205 0 82 chr1 139657038 139657123 -57538309 + A-rich Low_complexity Low_complexity 1 78 0 2 1650 388 320 14 0 chr1 139657128 139657275 -57538157 - Lx7 LINE L1 -388 7308 7160 2 1650 285 284 30 159 chr1 139657383 139657584 -57537848 - MLT1B LTR MaLR -25 365 191 2 1650 464 235 20 0 chr1 139658221 139658323 -57537109 - B4A SINE B4 -188 104 1 2 1650 244 0 56 0 chr1 139658708 139658744 -57536688 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1650 1499 173 48 51 chr1 139659577 139659893 -57535539 + MTC LTR MaLR 104 418 -3 2 1650 229 350 10 40 chr1 139661502 139661555 -57533877 + LTR78 LTR ERV1 852 902 -402 2 1650 360 0 0 0 chr1 139661555 139661595 -57533837 + (TTCC)n Simple_repeat Simple_repeat 4 43 0 2 1650 229 350 10 40 chr1 139661595 139661610 -57533822 + LTR78 LTR ERV1 903 916 -388 2 1650 506 230 73 7 chr1 139661610 139661746 -57533686 + B1_Mur1 SINE Alu 4 148 -1 2 1650 229 350 10 40 chr1 139661746 139661777 -57533655 + LTR78 LTR ERV1 917 948 -356 2 1650 219 69 0 0 chr1 139661777 139661806 -57533626 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 1650 245 164 0 16 chr1 139661826 139661869 -57533563 + A-rich Low_complexity Low_complexity 2 43 0 2 1650 1032 119 0 17 chr1 139661869 139662049 -57533383 + (GGAAA)n Simple_repeat Simple_repeat 4 180 0 2 1650 245 164 0 16 chr1 139662049 139662067 -57533365 + A-rich Low_complexity Low_complexity 44 61 0 2 1650 207 226 0 19 chr1 139662595 139662649 -57532783 + T-rich Low_complexity Low_complexity 1 53 0 2 1650 435 289 35 14 chr1 139662811 139662955 -57532477 + RSINE1 SINE B4 3 149 -16 2 1650 391 162 20 0 chr1 139662979 139663078 -57532354 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 1650 306 0 0 0 chr1 139663078 139663112 -57532320 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1650 244 348 0 14 chr1 139665387 139665457 -57529975 + RSINE1 SINE B4 9 77 -88 2 1650 483 33 0 0 chr1 139665531 139665592 -57529840 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1650 30 27 0 0 chr1 139665592 139665629 -57529803 + AT_rich Low_complexity Low_complexity 1 37 0 2 1650 223 130 51 13 chr1 139666363 139666441 -57528991 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2 1650 240 35 0 0 chr1 139666981 139667010 -57528422 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1650 811 260 9 56 chr1 139667017 139667233 -57528199 + B3 SINE B2 6 211 -5 2 1650 413 292 64 28 chr1 139668105 139668323 -57527109 + L1M2 LINE L1 5395 5620 -680 2 1650 1465 238 99 8 chr1 139668457 139668830 -57526602 + MTD LTR MaLR 1 407 -12 2 1650 783 260 5 39 chr1 139668844 139669048 -57526384 + B3A SINE B2 2 198 0 2 1650 1442 213 9 40 chr1 139669382 139669709 -57525723 + ORR1C2 LTR MaLR 68 384 0 2 1650 741 271 36 5 chr1 139669773 139669966 -57525466 + B3 SINE B2 4 202 -14 2 1650 2667 250 41 20 chr1 139670820 139671601 -57523831 + L1_Mur3 LINE L1 325 1121 -6591 2 1650 227 204 19 0 chr1 139671568 139671622 -57523810 + L1M4b LINE L1 1484 1538 -5796 2 1650 771 188 0 6 chr1 139671621 139671782 -57523650 + L1_Mur3 LINE L1 1642 1801 -4079 2 1650 454 215 52 0 chr1 139671809 139671944 -57523488 + L1_Mur3 LINE L1 1130 1271 -6441 2 1650 240 137 59 0 chr1 139672138 139672189 -57523243 + T-rich Low_complexity Low_complexity 3 56 0 2 1650 225 81 81 0 chr1 139672215 139672252 -57523180 + MurSatRep1 Unknown Unknown 235 274 -1863 2 1650 232 301 45 19 chr1 139672291 139672447 -57522985 - L1MD LINE L1 -3744 2402 2243 2 1650 230 292 31 0 chr1 139672499 139672564 -57522868 - B1_Mm SINE Alu -2 145 79 2 1650 305 286 0 67 chr1 139672506 139672596 -57522836 - ID_B1 SINE B4 -8 216 133 2 1650 324 254 40 142 chr1 139672546 139672682 -57522750 - B1F2 SINE Alu -22 127 3 2 1650 351 196 36 18 chr1 139672952 139673118 -57522314 + (TA)n Simple_repeat Simple_repeat 2 170 0 2 1650 1616 223 41 25 chr1 139673464 139673832 -57521600 - ORR1D1 LTR MaLR 0 374 1 2 1650 571 313 137 35 chr1 139674595 139675430 -57520002 - HAL1 LINE L1 -285 2222 1303 2 1650 215 205 0 88 chr1 139675461 139675517 -57519915 + T-rich Low_complexity Low_complexity 36 88 0 2 1650 594 176 102 7 chr1 139675517 139675654 -57519778 - B1_Mur4 SINE Alu 0 150 1 2 1650 215 205 0 88 chr1 139675654 139675688 -57519744 + T-rich Low_complexity Low_complexity 6 35 0 2 1650 23 0 0 0 chr1 139675791 139675814 -57519618 + AT_rich Low_complexity Low_complexity 1 23 0 2 1650 1701 80 15 42 chr1 139675817 139676078 -57519354 - L1_Mus2 LINE L1 0 6566 6313 2 1650 294 255 100 77 chr1 139676127 139676297 -57519135 - Lx8 LINE L1 -31 7442 7269 2 1650 239 54 0 26 chr1 139676848 139676886 -57518546 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1650 2356 197 40 2 chr1 139676897 139677475 -57517957 - Lx4B LINE L1 -27 6949 6322 2 1650 4005 167 27 9 chr1 139677469 139678603 -57516829 + Lx2B LINE L1 5199 6353 -647 2 1650 2698 81 6 6 chr1 139678626 139678988 -57516444 + L1Md_F2 LINE L1 6218 6579 -3 2 1650 507 133 0 0 chr1 139679162 139679267 -57516165 + (TC)n Simple_repeat Simple_repeat 2 106 0 2 1650 315 0 0 0 chr1 139679267 139679302 -57516130 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1650 329 265 138 0 chr1 139679310 139679506 -57515926 - L1ME2 LINE L1 -260 5904 5682 2 1650 1428 116 143 0 chr1 139680291 139680549 -57514883 - RLTR10A LTR ERVK 0 411 117 2 1650 234 274 91 36 chr1 139680606 139680716 -57514716 - Lx8 LINE L1 -72 7401 7286 2 1650 1757 119 7 7 chr1 139680852 139681131 -57514301 + L1_Mus3 LINE L1 6348 6626 -12 2 1650 299 158 74 62 chr1 139681695 139681776 -57513656 + RLTR25B LTR ERVK 428 509 -519 2 1650 833 73 0 0 chr1 139681704 139681814 -57513618 + B1_Mus1 SINE Alu 34 143 -5 2 1650 369 0 0 0 chr1 139681916 139681957 -57513475 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 2 1650 255 306 83 98 chr1 139684961 139685226 -57510206 - MER20B DNA MER1_type -9 774 514 2 1650 875 145 210 0 chr1 139686834 139687020 -57508412 - URR1B DNA MER1_type 0 225 1 2 1650 773 331 34 8 chr1 139687349 139687617 -57507815 - B4A SINE B4 0 292 18 2 1650 266 0 0 29 chr1 139687637 139687672 -57507760 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1650 386 390 60 11 chr1 139688358 139688708 -57506724 + L2 LINE L2 2609 2975 -444 2 1650 186 43 0 0 chr1 139688952 139688975 -57506457 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2 1650 377 156 20 20 chr1 139688985 139689083 -57506349 + CT-rich Low_complexity Low_complexity 3 100 0 2 1650 341 297 65 45 chr1 139689185 139689386 -57506046 - L1MC LINE L1 -811 5522 5318 2 1650 574 315 18 12 chr1 139689402 139689566 -57505866 - RSINE1 SINE B4 0 165 1 2 1650 523 227 167 48 chr1 139689589 139690044 -57505388 - L1MC LINE L1 -835 5311 4779 2 1650 461 196 0 29 chr1 139690162 139690267 -57505165 + Lx6 LINE L1 7359 7460 0 2 1650 747 214 140 21 chr1 139690281 139690467 -57504965 - B3 SINE B2 -8 208 1 2 1650 779 307 80 21 chr1 139691028 139691314 -57504118 + Lx8 LINE L1 7022 7324 -149 2 1650 389 20 0 20 chr1 139691396 139691447 -57503985 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1650 28 0 0 0 chr1 139695742 139695770 -57499662 + AT_rich Low_complexity Low_complexity 1 28 0 2 1650 1602 155 31 3 chr1 139695771 139696062 -57499370 - Lx4A LINE L1 -18 7040 6742 2 1650 951 140 28 0 chr1 139696068 139696234 -57499198 + Lx4A LINE L1 6450 6663 -395 2 1650 772 325 4 25 chr1 139696454 139696697 -57498735 - MTE2a-int LTR MaLR -420 1160 923 3 1650 292 281 19 37 chr1 139696665 139696772 -57498660 - MTE2a-int LTR MaLR -674 584 480 3 1650 515 304 59 84 chr1 139696974 139697294 -57498138 - MTE2a-int LTR MaLR -918 340 29 3 1650 747 288 30 113 chr1 139697311 139697623 -57497809 - MTE2a LTR MaLR -14 365 79 3 1650 1970 166 109 18 chr1 139697623 139698009 -57497423 + MTC LTR MaLR 1 421 0 3 1650 747 296 54 109 chr1 139698009 139698099 -57497333 - MTE2a LTR MaLR -309 110 18 3 1650 300 27 0 0 chr1 139699866 139699903 -57495529 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1650 321 47 0 0 chr1 139699903 139699945 -57495487 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1650 243 324 124 58 chr1 139700799 139701025 -57494407 + LTR82B Low_complexity ERVL 563 803 -27 3 1650 21 36 0 0 chr1 139701203 139701231 -57494201 + AT_rich Low_complexity Low_complexity 1 28 0 3 1650 3949 34 4 0 chr1 139701639 139702108 -57493324 - L1Md_F2 LINE L1 -14 6568 6098 3 1650 432 0 0 0 chr1 139702757 139702805 -57492627 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1650 621 0 0 0 chr1 139702805 139702874 -57492558 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1650 22 35 0 0 chr1 139703900 139703929 -57491503 + AT_rich Low_complexity Low_complexity 1 29 0 3 1650 467 321 91 87 chr1 139705537 139705824 -57489608 - B4 SINE B4 0 292 5 3 1650 315 0 0 0 chr1 139706578 139706613 -57488819 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1650 324 0 0 0 chr1 139706613 139706648 -57488784 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1650 380 273 84 12 chr1 139706763 139706930 -57488502 + ALINE LINE RTE 199 377 -240 3 1650 643 170 8 0 chr1 139708447 139708570 -57486862 - B1_Mur4 SINE Alu -13 137 8 3 1650 259 310 14 0 chr1 139711131 139711202 -57484230 - RMER15 LTR ERVL -12 563 492 3 1650 432 51 0 0 chr1 139711214 139711273 -57484159 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1650 284 230 87 35 chr1 139713949 139714087 -57481345 - MTEb LTR MaLR -2 377 216 3 1650 264 250 59 106 chr1 139714309 139714394 -57481038 - MTEb LTR MaLR -297 82 2 3 1650 670 313 80 45 chr1 139715453 139716115 -57479317 - L1M2 LINE L1 -744 5399 4715 3 1650 343 318 36 44 chr1 139716120 139716370 -57479062 - L1_Rod LINE L1 -1660 4187 3940 3 1650 752 181 0 20 chr1 139718183 139718335 -57477097 + ORR1C2 LTR MaLR 1 149 -235 3 1650 234 0 0 0 chr1 139718990 139719016 -57476416 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 1650 255 289 73 77 chr1 139719373 139719518 -57475914 + MIR3 SINE MIR 20 157 -51 3 1650 1492 249 44 12 chr1 139720141 139720154 -57475278 + MTD LTR MaLR 1 18 -401 3 1650 486 0 0 0 chr1 139720154 139720208 -57475224 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1650 1492 249 44 12 chr1 139720208 139720600 -57474832 + MTD LTR MaLR 19 418 -1 3 1650 404 82 16 0 chr1 139720686 139720747 -57474685 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1650 26 50 0 0 chr1 139722117 139722157 -57473275 + AT_rich Low_complexity Low_complexity 1 40 0 3 1650 487 309 39 6 chr1 139722372 139722554 -57472878 + Lx6 LINE L1 7271 7458 -2 3 1651 229 182 0 0 chr1 139724281 139724325 -57471107 - L2a LINE L2 -1 3425 3382 3 1651 34 24 0 0 chr1 139724864 139724905 -57470527 + AT_rich Low_complexity Low_complexity 1 41 0 3 1651 200 200 0 0 chr1 139725321 139725356 -57470076 + (CATA)n Simple_repeat Simple_repeat 3 37 0 3 1651 1126 260 35 21 chr1 139725462 139725798 -57469634 - ORR1D2 LTR MaLR -19 377 10 3 1651 614 237 86 48 chr1 139725965 139726151 -57469281 + B4A SINE B4 88 280 -12 3 1651 243 0 0 0 chr1 139726157 139726184 -57469248 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1651 276 262 0 0 chr1 139726899 139727002 -57468430 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 1651 21 36 0 0 chr1 139727713 139727741 -57467691 + AT_rich Low_complexity Low_complexity 1 28 0 3 1651 41 21 0 0 chr1 139727880 139727928 -57467504 + AT_rich Low_complexity Low_complexity 1 48 0 3 1651 486 49 0 0 chr1 139728257 139728318 -57467114 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 3 1651 279 0 0 0 chr1 139728755 139728786 -57466646 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1651 1542 225 34 62 chr1 139730076 139730493 -57464939 + MTD LTR MaLR 1 405 -14 3 1651 189 94 0 0 chr1 139730559 139730591 -57464841 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1651 240 380 18 27 chr1 139730714 139730825 -57464607 + B1F1 SINE Alu 3 112 -37 3 1651 642 326 16 5 chr1 139730899 139731090 -57464342 + B3A SINE B2 1 193 -5 3 1651 7036 88 28 3 chr1 139731153 139732171 -57463261 + Lx LINE L1 5612 6654 0 3 1651 26 74 0 0 chr1 139732680 139732734 -57462698 + AT_rich Low_complexity Low_complexity 1 54 0 3 1651 1191 68 0 0 chr1 139732813 139732960 -57462472 + B1_Mus2 SINE Alu 1 147 0 3 1651 210 209 15 15 chr1 139732966 139733034 -57462398 + A-rich Low_complexity Low_complexity 4 71 0 3 1651 30 27 0 0 chr1 139733061 139733098 -57462334 + AT_rich Low_complexity Low_complexity 1 37 0 3 1651 214 109 21 42 chr1 139733223 139733271 -57462161 + GA-rich Low_complexity Low_complexity 2 48 0 3 1651 982 310 13 74 chr1 139733767 139734077 -57461355 + B4A SINE B4 1 291 -1 3 1651 205 182 0 0 chr1 139735458 139735502 -57459930 + A-rich Low_complexity Low_complexity 1 44 0 3 1651 1178 68 0 0 chr1 139736771 139736917 -57458515 + B1_Mus1 SINE Alu 2 147 -1 3 1651 279 68 51 0 chr1 139736918 139736977 -57458455 + (CAAAAA)n Simple_repeat Simple_repeat 4 65 0 3 1651 761 250 33 28 chr1 139738360 139738574 -57456858 - B3 SINE B2 -1 215 1 3 1651 489 282 38 105 chr1 139739380 139739403 -57456029 + B3A SINE B2 3 25 -173 3 1651 2700 62 18 0 chr1 139739403 139739743 -57455689 - ORR1A0 LTR MaLR 0 346 1 3 1651 13494 63 10 2 chr1 139739743 139741521 -57453911 - ORR1A0-int LTR MaLR 0 1792 1 3 1651 2807 53 12 0 chr1 139741521 139741863 -57453569 - ORR1A0 LTR MaLR 0 346 1 3 1651 489 282 38 105 chr1 139741863 139742047 -57453385 + B3A SINE B2 26 196 -2 3 1651 3595 149 23 5 chr1 139742156 139742754 -57452678 + Lx4A LINE L1 6450 7058 0 3 1651 234 353 29 43 chr1 139743206 139743345 -57452087 - L2c LINE L2 -61 3326 3190 3 1651 201 374 63 23 chr1 139743440 139743615 -57451817 - MIR3 SINE MIR -23 185 4 3 1651 533 265 68 0 chr1 139744535 139744667 -57450765 + B3 SINE B2 1 141 -75 3 1651 616 280 68 92 chr1 139745010 139745305 -57450127 - B4 SINE B4 -4 288 1 3 1651 1942 99 43 7 chr1 139746489 139746794 -57448638 - IAPLTR2b LTR ERVK -11 316 1 3 1651 658 324 14 0 chr1 139746985 139747192 -57448240 + B3 SINE B2 1 210 -6 3 1651 207 0 0 0 chr1 139747194 139747217 -57448215 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 3 1651 538 316 59 12 chr1 139747482 139747806 -57447626 - L1MA4 LINE L1 -255 6747 6409 3 1651 846 291 98 83 chr1 139747871 139748279 -57447153 - MTE2a LTR MaLR 0 419 6 3 1651 358 256 0 0 chr1 139748283 139748373 -57447059 - L1MA4 LINE L1 -698 6316 6227 3 1651 338 0 0 23 chr1 139748375 139748418 -57447014 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 1651 983 156 61 20 chr1 139748493 139748520 -57446912 - ORR1C1 LTR MaLR -172 206 170 3 1651 303 28 0 0 chr1 139748520 139748556 -57446876 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1651 983 156 61 20 chr1 139748556 139748725 -57446707 - ORR1C1 LTR MaLR -209 169 3 3 1651 1085 301 125 13 chr1 139748855 139749975 -57445457 - L1MA4 LINE L1 -3991 2858 1614 3 1651 441 355 39 34 chr1 139749993 139750197 -57445235 + B3 SINE B2 1 205 -11 3 1651 331 285 78 107 chr1 139750316 139750628 -57444804 - MTEb LTR MaLR -11 368 56 3 1651 1032 231 113 36 chr1 139751770 139752079 -57443353 - ORR1D2 LTR MaLR -36 334 2 3 1651 8605 123 6 15 chr1 139752670 139752683 -57442749 - Lx3A LINE L1 0 6981 6971 3 1651 366 23 0 0 chr1 139752683 139752726 -57442706 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 1651 8605 112 6 10 chr1 139752726 139754332 -57441100 - Lx3A LINE L1 -11 6970 5378 3 1651 794 95 36 7 chr1 139754321 139754459 -57440973 + Lx3A LINE L1 5261 5402 -484 3 1651 219 232 0 0 chr1 139754660 139754716 -57440716 + (TTG)n Simple_repeat Simple_repeat 1 56 0 3 1651 21 57 0 0 chr1 139755822 139755857 -57439575 + AT_rich Low_complexity Low_complexity 1 35 0 3 1651 410 232 8 8 chr1 139755869 139755995 -57439437 - Lx2B LINE L1 -13 6987 6862 3 1651 333 67 0 0 chr1 139756433 139756493 -57438939 - MusHAL1 LINE L1 0 2712 2653 3 1651 228 179 90 0 chr1 139756497 139756564 -57438868 - L1M2 LINE L1 -3321 2822 2750 3 1651 221 171 0 0 chr1 139758642 139758683 -57436749 + A-rich Low_complexity Low_complexity 1 41 0 3 1651 954 218 34 0 chr1 139759846 139760025 -57435407 + B3 SINE B2 23 207 -9 3 1651 29 28 0 0 chr1 139760025 139760061 -57435371 + AT_rich Low_complexity Low_complexity 1 36 0 3 1651 811 317 96 17 chr1 139761069 139761598 -57433834 - Lx8 LINE L1 -29 7444 6874 3 1651 1208 294 92 57 chr1 139761600 139761904 -57433528 - Lx8 LINE L1 -970 6503 6212 3 1651 683 92 9 0 chr1 139761904 139762013 -57433419 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 1651 1208 294 92 57 chr1 139762013 139762462 -57432970 - Lx8 LINE L1 -1262 6211 5724 3 1651 796 277 24 27 chr1 139762460 139762797 -57432635 + Lx8 LINE L1 5335 5670 -177 3 1651 306 0 0 0 chr1 139762840 139762874 -57432558 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1651 1298 307 61 26 chr1 139764017 139764525 -57430907 - MT2A LTR ERVL -1 532 7 3 1651 384 22 0 0 chr1 139765071 139765116 -57430316 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1651 8601 136 9 5 chr1 139765135 139767159 -57428273 - Lx2 LINE L1 -6 6991 4961 3 1651 4917 148 33 1 chr1 139767158 139768055 -57427377 + L1_Mur2 LINE L1 3547 4472 -1405 3 1651 385 263 0 50 chr1 139768131 139768231 -57427201 - PB1D10 SINE Alu -4 113 19 3 1651 21 71 0 0 chr1 139768745 139768787 -57426645 + AT_rich Low_complexity Low_complexity 1 42 0 3 1651 823 140 263 0 chr1 139769553 139769732 -57425700 + URR1A DNA MER1_type 1 226 0 3 1651 455 283 64 0 chr1 139770520 139770707 -57424725 + Lx6 LINE L1 7234 7432 -28 3 1651 243 0 0 0 chr1 139771107 139771134 -57424298 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1651 22 0 0 0 chr1 139773406 139773428 -57422004 + AT_rich Low_complexity Low_complexity 1 22 0 3 1651 1030 201 27 9 chr1 139773848 139774069 -57421363 + URR1B DNA MER1_type 1 225 0 3 1651 681 178 0 19 chr1 139774621 139774781 -57420651 + CT-rich Low_complexity Low_complexity 2 158 0 3 1651 1094 14 28 0 chr1 139774828 139774972 -57420460 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 3 1651 1450 221 21 15 chr1 139774980 139775306 -57420126 + Lx5 LINE L1 6722 7049 -1 3 1651 25 0 0 0 chr1 139775365 139775390 -57420042 + AT_rich Low_complexity Low_complexity 1 25 0 3 1651 742 264 10 63 chr1 139776440 139776646 -57418786 - B3A SINE B2 -1 197 3 4 1651 423 0 0 0 chr1 139776993 139777040 -57418392 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 1651 318 266 24 48 chr1 139777374 139777457 -57417975 - B3 SINE B2 -2 214 134 4 1651 2734 121 0 40 chr1 139777659 139778108 -57417324 - Lx2 LINE L1 -1 6996 6566 4 1651 270 0 0 0 chr1 139778700 139778730 -57416702 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 1651 1020 232 19 0 chr1 139779039 139779250 -57416182 - B3 SINE B2 0 216 2 4 1651 288 0 0 0 chr1 139780120 139780152 -57415280 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1651 468 0 0 0 chr1 139780152 139780203 -57415229 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1651 23 0 0 0 chr1 139780995 139781018 -57414414 + AT_rich Low_complexity Low_complexity 1 23 0 4 1651 592 346 85 13 chr1 139781147 139781463 -57413969 - ORR1E LTR MaLR -15 344 6 4 1651 303 279 140 77 chr1 139782375 139782807 -57412625 - L1MA9 LINE L1 -2 6310 5854 4 1651 749 204 94 18 chr1 139782810 139782980 -57412452 - MTD LTR MaLR -41 378 196 4 1651 747 298 78 24 chr1 139782982 139783433 -57411999 - L1MA9 LINE L1 -1107 5033 4559 4 1651 416 282 179 42 chr1 139783772 139784079 -57411353 - MLT1D LTR MaLR -46 459 111 4 1651 264 244 11 34 chr1 139785181 139785270 -57410162 + (CATA)n Simple_repeat Simple_repeat 4 90 0 4 1651 255 185 24 24 chr1 139787270 139787353 -57408079 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 4 1651 3732 172 25 9 chr1 139787897 139788549 -57406883 - Lx5 LINE L1 0 7050 6389 4 1651 282 289 80 15 chr1 139790849 139790986 -57404446 + MER5A1 DNA MER1_type 20 165 -1 4 1651 433 254 160 27 chr1 139793697 139793916 -57401516 + Lx8 LINE L1 7225 7472 -1 4 1651 333 102 0 0 chr1 139795924 139795983 -57399449 + (T)n Simple_repeat Simple_repeat 1 59 0 4 1651 450 0 0 0 chr1 139797642 139797692 -57397740 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1651 297 0 0 0 chr1 139799876 139799909 -57395523 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1651 248 130 22 0 chr1 139800637 139800683 -57394749 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1651 342 250 28 0 chr1 139800779 139800851 -57394581 - ID4_ SINE ID -5 78 5 4 1651 1323 73 63 0 chr1 139802944 139803150 -57392282 - L1_Mus3 LINE L1 0 6638 6420 4 1651 294 98 0 0 chr1 139803444 139803495 -57391937 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1651 432 0 0 0 chr1 139804122 139804170 -57391262 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1651 832 151 14 0 chr1 139807884 139808023 -57387409 + B1_Mur4 SINE Alu 1 141 -9 4 1651 381 239 0 42 chr1 139808044 139808140 -57387292 + B3A SINE B2 1 92 -106 4 1651 22 35 0 0 chr1 139809079 139809108 -57386324 + AT_rich Low_complexity Low_complexity 1 29 0 4 1651 315 298 0 9 chr1 139810199 139810304 -57385128 + (TA)n Simple_repeat Simple_repeat 1 104 0 4 1651 427 152 33 0 chr1 139810715 139810807 -57384625 + (TATG)n Simple_repeat Simple_repeat 4 98 0 4 1651 407 275 32 121 chr1 139810812 139810936 -57384496 - B3A SINE B2 -13 185 73 4 1651 23 33 0 0 chr1 139811523 139811553 -57383879 + AT_rich Low_complexity Low_complexity 1 30 0 4 1651 2248 41 37 10 chr1 139812710 139813006 -57382426 - L1Md_F2 LINE L1 -15 6567 6264 4 1651 240 100 0 0 chr1 139813098 139813138 -57382294 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1651 263 281 78 62 chr1 139814058 139814187 -57381245 - MLT2D LTR ERVL -64 350 220 4 1651 197 379 25 25 chr1 139816112 139816231 -57379201 - L2a LINE L2 -5 3421 3303 4 1651 444 338 154 25 chr1 139816406 139816801 -57378631 - L2a LINE L2 -364 3055 2610 4 1651 195 42 0 0 chr1 139818011 139818035 -57377397 + (CAAAG)n Simple_repeat Simple_repeat 1 24 0 4 1651 189 0 0 0 chr1 139818226 139818247 -57377185 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1651 267 31 0 0 chr1 139819762 139819794 -57375638 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1651 321 296 44 15 chr1 139821217 139821354 -57374078 - B1F SINE Alu 0 149 9 4 1651 22 0 0 0 chr1 139821698 139821720 -57373712 + AT_rich Low_complexity Low_complexity 1 22 0 4 1651 237 197 26 13 chr1 139821720 139821797 -57373635 + CT-rich Low_complexity Low_complexity 1 78 0 4 1651 270 116 0 0 chr1 139822956 139822999 -57372433 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1651 25 0 0 0 chr1 139823306 139823331 -57372101 + AT_rich Low_complexity Low_complexity 1 25 0 4 1651 205 127 18 35 chr1 139824048 139824105 -57371327 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 4 1651 26 50 0 0 chr1 139825587 139825627 -57369805 + AT_rich Low_complexity Low_complexity 1 40 0 4 1651 254 288 0 0 chr1 139825699 139825758 -57369674 + GA-rich Low_complexity Low_complexity 4 62 0 4 1651 915 70 47 6 chr1 139827751 139827923 -57367509 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1651 414 266 44 9 chr1 139829928 139830042 -57365390 - PB1D7 SINE Alu -2 118 1 4 1651 24 32 0 0 chr1 139830488 139830519 -57364913 + AT_rich Low_complexity Low_complexity 1 31 0 4 1651 305 48 30 45 chr1 139831073 139831139 -57364293 + (TTTTTG)n Simple_repeat Simple_repeat 5 69 0 4 1651 1149 68 0 0 chr1 139831145 139831291 -57364141 - B1_Mus1 SINE Alu -1 147 2 4 1651 384 103 0 0 chr1 139831588 139831646 -57363786 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1651 1066 78 14 0 chr1 139831781 139831923 -57363509 + B1_Mus2 SINE Alu 4 147 0 4 1651 207 0 0 0 chr1 139831923 139831946 -57363486 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1651 384 82 0 0 chr1 139832351 139832412 -57363020 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1651 271 341 100 8 chr1 139833469 139833599 -57361833 - MER5A DNA MER1_type 0 189 48 4 1651 339 269 0 0 chr1 139837745 139837823 -57357609 - ID4_ SINE ID -1 82 5 4 1651 212 59 29 0 chr1 139839829 139839863 -57355569 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1651 387 0 0 0 chr1 139839970 139840013 -57355419 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1651 251 190 17 0 chr1 139840466 139840524 -57354908 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 1651 372 169 0 53 chr1 139840534 139840628 -57354804 - Lx9 LINE L1 -127 7517 7429 4 1651 554 301 7 14 chr1 139840658 139840803 -57354629 - B1_Mur1 SINE Alu -3 146 3 4 1651 24 32 0 0 chr1 139842080 139842111 -57353321 + AT_rich Low_complexity Low_complexity 1 31 0 4 1651 991 76 0 0 chr1 139842471 139842603 -57352829 + B1_Mus2 SINE Alu 2 133 -14 4 1651 325 258 41 51 chr1 139843003 139843101 -57352331 - PB1D10 SINE Alu -20 97 1 4 1651 439 233 32 67 chr1 139843123 139843256 -57352176 - PB1D7 SINE Alu -20 129 4 4 1651 194 0 0 37 chr1 139843371 139843398 -57352034 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1651 893 130 48 24 chr1 139843398 139843564 -57351868 - B2_Mm2 SINE B2 -14 181 12 4 1651 24 32 0 0 chr1 139843979 139844010 -57351422 + AT_rich Low_complexity Low_complexity 1 31 0 4 1651 366 107 0 0 chr1 139844379 139844435 -57350997 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1651 24 53 0 0 chr1 139844443 139844481 -57350951 + AT_rich Low_complexity Low_complexity 1 38 0 4 1651 239 381 83 0 chr1 139845395 139845479 -57349953 - B1F1 SINE Alu -56 93 3 4 1651 235 49 49 0 chr1 139845621 139845662 -57349770 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 4 1651 314 0 49 0 chr1 139847012 139847053 -57348379 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1651 198 185 167 15 chr1 139847112 139847178 -57348254 + MIRc SINE MIR 90 165 -103 4 1651 234 91 0 0 chr1 139848914 139848947 -57346485 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1651 34 24 0 0 chr1 139850439 139850480 -57344952 + AT_rich Low_complexity Low_complexity 1 41 0 4 1651 295 299 0 0 chr1 139851612 139851729 -57343703 + (TA)n Simple_repeat Simple_repeat 2 118 0 4 1651 262 250 0 42 chr1 139852141 139852212 -57343220 + CT-rich Low_complexity Low_complexity 1 68 0 4 1652 483 364 35 0 chr1 139853977 139854150 -57341282 - B4A SINE B4 -12 280 102 4 1652 241 310 9 57 chr1 139854814 139854920 -57340512 - AmnSINE1 SINE SINE -118 457 357 4 1652 25 0 0 0 chr1 139856339 139856364 -57339068 + AT_rich Low_complexity Low_complexity 1 25 0 4 1652 1475 134 41 48 chr1 139857144 139857458 -57337974 - Lx2 LINE L1 -1 6996 6685 4 1652 394 233 11 0 chr1 139857699 139857789 -57337643 + Lx9 LINE L1 7314 7404 -240 4 1652 204 40 0 0 chr1 139858031 139858056 -57337376 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 4 1652 270 0 0 0 chr1 139858591 139858621 -57336811 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1652 358 240 83 111 chr1 139859047 139859155 -57336277 + PB1D7 SINE Alu 4 108 -19 4 1652 417 333 7 22 chr1 139859180 139859315 -57336117 + RSINE1 SINE B4 11 143 -22 4 1652 186 43 0 0 chr1 139859585 139859608 -57335824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1652 441 0 0 0 chr1 139862035 139862084 -57333348 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1652 423 0 0 0 chr1 139862084 139862130 -57333302 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1652 450 0 0 0 chr1 139863947 139863997 -57331435 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1652 329 238 206 0 chr1 139864675 139864835 -57330597 - L1MA8 LINE L1 -306 5985 5793 4 1652 222 91 0 0 chr1 139864840 139864873 -57330559 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1652 315 213 0 0 chr1 139864900 139864975 -57330457 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 4 1652 709 253 103 64 chr1 139865001 139865116 -57330316 - L1MA8 LINE L1 -512 5779 5652 4 1652 261 0 0 0 chr1 139865116 139865145 -57330287 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1652 709 253 103 64 chr1 139865145 139865418 -57330014 - L1MA8 LINE L1 -640 5651 5376 4 1652 21 57 0 0 chr1 139865421 139865456 -57329976 + AT_rich Low_complexity Low_complexity 1 35 0 4 1652 25 0 0 0 chr1 139865564 139865589 -57329843 + AT_rich Low_complexity Low_complexity 1 25 0 4 1652 592 307 67 38 chr1 139866132 139866344 -57329088 + B3A SINE B2 1 206 -10 5 1652 1453 71 0 6 chr1 139866432 139866756 -57328676 + (GAAA)n Simple_repeat Simple_repeat 1 321 0 5 1652 2328 48 0 10 chr1 139866772 139867067 -57328365 + L1Md_F2 LINE L1 6291 6582 0 5 1652 437 272 144 21 chr1 139867350 139867538 -57327894 + Lx8 LINE L1 7233 7443 -30 5 1652 768 119 0 0 chr1 139867644 139867762 -57327670 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 5 1652 320 235 17 17 chr1 139868433 139868550 -57326882 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 5 1652 705 277 6 6 chr1 139868672 139868832 -57326600 - RSINE1 SINE B4 0 165 6 5 1652 1933 250 108 37 chr1 139871245 139871510 -57323922 + Lx6 LINE L1 6453 6746 -714 5 1652 861 84 0 0 chr1 139871510 139871629 -57323803 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 5 1652 1933 250 108 37 chr1 139871629 139871776 -57323656 + Lx6 LINE L1 6747 6903 -557 5 1652 816 40 0 0 chr1 139871776 139871876 -57323556 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 1652 1933 260 246 19 chr1 139871876 139872336 -57323096 + Lx6 LINE L1 6904 7458 -2 5 1652 1089 281 135 8 chr1 139872634 139873004 -57322428 + MTD LTR MaLR 1 417 -2 5 1652 366 357 96 41 chr1 139873074 139873326 -57322106 + MLT1F2 LTR MaLR 43 304 -265 5 1652 405 0 0 0 chr1 139873993 139874038 -57321394 + (TAA)n Simple_repeat Simple_repeat 3 47 0 5 1652 417 237 95 104 chr1 139874215 139874436 -57320996 + RMER2 LTR ERV1 338 556 -11 5 1652 705 24 0 0 chr1 139875098 139875181 -57320251 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1652 297 0 0 0 chr1 139875181 139875213 -57320219 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1652 235 333 209 5 chr1 139875287 139875670 -57319762 + L2a LINE L2 2107 2567 -852 5 1652 213 375 43 14 chr1 139875782 139875920 -57319512 + L2a LINE L2 2758 2899 -520 5 1652 23048 2 0 2 chr1 139876180 139879472 -57315960 - L1Md_A LINE L1 0 6582 3295 5 1652 10902 7 0 0 chr1 139879472 139880726 -57314706 + L1Md_A LINE L1 2039 3292 -2591 5 1652 240 197 61 5 chr1 139880757 139880836 -57314596 - L1MA8 LINE L1 -295 6005 5925 5 1652 230 387 82 57 chr1 139880837 139881240 -57314192 + L2a LINE L2 3007 3419 -7 5 1652 1854 165 24 119 chr1 139881357 139881770 -57313662 - ORR1C2 LTR MaLR -2 382 9 5 1652 216 351 0 13 chr1 139881873 139881948 -57313484 - B4 SINE B4 -217 75 2 5 1652 324 340 138 33 chr1 139881980 139882190 -57313242 + HAL1-3A_ME LINE L1 1975 2206 -652 5 1652 405 0 0 0 chr1 139882190 139882235 -57313197 + (GAA)n Simple_repeat Simple_repeat 2 46 0 5 1652 701 253 179 24 chr1 139882323 139882574 -57312858 + B4A SINE B4 3 292 0 5 1652 688 327 33 74 chr1 139882633 139882996 -57312436 + MLT1E2 LTR MaLR 278 625 -2 5 1652 811 325 83 43 chr1 139883198 139883642 -57311790 + LTR16B2 LTR ERVL 1 462 0 5 1652 847 303 124 6 chr1 139883705 139884044 -57311388 - MTE2b LTR MaLR 0 379 1 5 1652 559 303 91 5 chr1 139884044 139884253 -57311179 - MTE2b-int LTR MaLR 0 1580 1354 5 1652 508 247 10 0 chr1 139884254 139884351 -57311081 - 5S rRNA rRNA -21 100 3 5 1652 23 0 0 0 chr1 139884353 139884376 -57311056 + AT_rich Low_complexity Low_complexity 1 23 0 5 1652 351 244 0 12 chr1 139884382 139884465 -57310967 - MTE2b-int LTR MaLR -225 1355 1274 5 1652 514 254 191 0 chr1 139884478 139884651 -57310781 - Lx8 LINE L1 -894 6579 6374 5 1652 781 324 15 64 chr1 139884652 139884919 -57310513 + B4 SINE B4 35 288 -4 5 1652 457 274 206 7 chr1 139884920 139885035 -57310397 - B3 SINE B2 -53 163 21 5 1652 3378 23 8 0 chr1 139885035 139885428 -57310004 - MTA_Mm LTR MaLR 0 396 1 5 1652 457 274 206 7 chr1 139885428 139885448 -57309984 - B3 SINE B2 -196 20 1 5 1652 4988 173 59 12 chr1 139885548 139886530 -57308902 - RLTR25B LTR ERVK 0 1028 1 5 1652 244 283 38 76 chr1 139886531 139886688 -57308744 - Lx8 LINE L1 -76 7397 7247 5 1652 938 284 16 8 chr1 139886736 139886988 -57308444 - Lx8 LINE L1 -311 7162 6909 5 1652 206 32 32 0 chr1 139887645 139887676 -57307756 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1652 3456 54 0 5 chr1 139889152 139889599 -57305833 - L1Md_F2 LINE L1 -141 6441 5997 5 1652 6468 52 1 16 chr1 139889598 139890490 -57304942 + Lx5 LINE L1 5039 5917 -1133 5 1652 1402 283 20 6 chr1 139891205 139891560 -57303872 + MTEb LTR MaLR 18 377 -2 5 1652 200 222 0 0 chr1 139892306 139892351 -57303081 + A-rich Low_complexity Low_complexity 1 45 0 5 1652 240 335 123 51 chr1 139892874 139893069 -57302363 + ORR1E LTR MaLR 55 263 -96 5 1652 913 288 153 36 chr1 139894426 139894811 -57300621 + MLT1D LTR MaLR 5 434 -71 5 1652 300 27 0 0 chr1 139895230 139895267 -57300165 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1652 709 305 7 0 chr1 139895270 139895424 -57300008 - RSINE1 SINE B4 -8 157 3 5 1652 313 203 56 28 chr1 139895588 139895659 -57299773 - HAL1-3A_ME LINE L1 -809 2049 1977 5 1652 367 342 66 13 chr1 139895743 139895894 -57299538 - RSINE1 SINE B4 -1 164 6 5 1652 257 333 54 8 chr1 139898018 139898148 -57297284 + MLT1D-int LTR MaLR 1 136 -1273 5 1652 534 303 89 27 chr1 139898203 139898427 -57297005 + MLT1D-int LTR MaLR 254 491 -918 5 1652 921 261 89 28 chr1 139898471 139898900 -57296532 + L1MA6 LINE L1 5580 6034 -266 5 1652 2268 176 0 37 chr1 139899041 139899478 -57295954 + MTC LTR MaLR 1 421 0 5 1652 22 35 0 0 chr1 139899696 139899725 -57295707 + AT_rich Low_complexity Low_complexity 1 29 0 5 1652 459 306 163 70 chr1 139899947 139900401 -57295031 + MLT1D-int LTR MaLR 890 1385 -24 5 1652 332 238 46 27 chr1 139900548 139900660 -57294772 - L1M4 LINE L1 -1355 4791 4672 5 1652 858 20 0 0 chr1 139901176 139901276 -57294156 + (TC)n Simple_repeat Simple_repeat 2 101 0 5 1652 351 0 0 0 chr1 139901276 139901314 -57294118 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1652 2058 130 12 0 chr1 139902493 139902815 -57292617 + ORR1A3 LTR MaLR 1 326 0 5 1652 182 374 45 36 chr1 139903741 139903852 -57291580 + MIR3 SINE MIR 57 168 -40 5 1652 887 73 8 0 chr1 139904061 139904185 -57291247 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 5 1652 348 366 136 15 chr1 139904200 139904538 -57290894 - MLT1I LTR MaLR -17 394 16 5 1652 830 228 278 18 chr1 139904733 139905014 -57290418 + ORR1D2 LTR MaLR 5 358 -12 5 1652 1996 248 181 39 chr1 139905017 139905789 -57289643 - RCHARR1 DNA MER1_type -77 897 16 5 1652 704 287 30 49 chr1 139906145 139906409 -57289023 + RMER15 LTR ERVL 272 530 -45 5 1652 656 178 0 7 chr1 139906537 139906684 -57288748 + (TA)n Simple_repeat Simple_repeat 1 146 0 5 1652 522 320 106 11 chr1 139906684 139906722 -57288710 - B3 SINE B2 -13 203 167 5 1652 309 26 0 0 chr1 139906722 139906760 -57288672 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1652 522 320 106 11 chr1 139906760 139906901 -57288531 - B3 SINE B2 -50 166 7 5 1652 1310 144 0 8 chr1 139907185 139907423 -57288009 + L1_Mur3 LINE L1 3885 4120 -1760 5 1652 2910 96 5 0 chr1 139908498 139908896 -57286536 + MTB LTR MaLR 1 400 0 5 1652 414 0 0 0 chr1 139909362 139909408 -57286024 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1652 198 0 0 0 chr1 139910752 139910774 -57284658 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1652 473 238 98 8 chr1 139911158 139911281 -57284151 - B1F SINE Alu -15 134 1 5 1652 21 57 0 0 chr1 139911285 139911320 -57284112 + AT_rich Low_complexity Low_complexity 1 35 0 5 1652 542 198 17 6 chr1 139912202 139912375 -57283057 + (CA)n Simple_repeat Simple_repeat 2 176 0 5 1652 230 312 10 41 chr1 139913215 139913312 -57282120 - MIRb SINE MIR -52 216 123 5 1652 2858 191 101 17 chr1 139913562 139913790 -57281642 + Lx5 LINE L1 5093 5317 -560 5 1652 423 0 0 0 chr1 139913790 139913837 -57281595 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1652 1187 48 0 0 chr1 139913837 139913982 -57281450 - B1_Mus1 SINE Alu -2 146 2 5 1652 3967 171 70 31 chr1 139913982 139914692 -57280740 + Lx5 LINE L1 5318 6139 -911 5 1652 1035 84 0 0 chr1 139914692 139914835 -57280597 + (GGGAGA)n Simple_repeat Simple_repeat 3 145 0 5 1652 3967 221 38 24 chr1 139914835 139915727 -57279705 + Lx5 LINE L1 6140 7043 -7 5 1652 1736 58 0 0 chr1 139915906 139916130 -57279302 - L1_Mus3 LINE L1 -375 6263 6040 5 1652 230 349 23 0 chr1 139916505 139916591 -57278841 + PB1D7 SINE Alu 7 94 -26 5 1652 217 330 56 46 chr1 139916591 139916613 -57278819 + ID_B1 SINE B4 88 196 -28 5 1652 333 316 91 60 chr1 139917549 139917748 -57277684 + MER20 DNA MER1_type 11 215 -4 5 1652 520 273 65 10 chr1 139917956 139918174 -57277258 + Lx2B LINE L1 6729 7012 -46 5 1652 315 309 164 42 chr1 139918312 139918477 -57276955 + B3 SINE B2 5 193 -23 5 1652 613 36 24 0 chr1 139918477 139918561 -57276871 + (AGGGGG)n Simple_repeat Simple_repeat 6 91 0 5 1652 315 309 164 42 chr1 139918561 139918584 -57276848 + B3 SINE B2 194 216 0 5 1652 740 83 9 0 chr1 139921796 139921905 -57273527 + (TC)n Simple_repeat Simple_repeat 1 110 0 5 1652 456 343 100 10 chr1 139922693 139922893 -57272539 - ORR1D2 LTR MaLR -6 364 147 5 1652 288 70 0 0 chr1 139922893 139922936 -57272496 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1652 1064 124 0 6 chr1 139922938 139923117 -57272315 + (GAA)n Simple_repeat Simple_repeat 1 178 0 5 1652 392 214 0 9 chr1 139923117 139923230 -57272202 + GA-rich Low_complexity Low_complexity 1 112 0 5 1652 253 307 20 0 chr1 139923231 139923256 -57272176 - ORR1D2 LTR MaLR -168 191 166 5 1652 1196 89 0 6 chr1 139923256 139923437 -57271995 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1652 253 307 20 0 chr1 139923437 139923512 -57271920 - ORR1D2 LTR MaLR -194 165 90 5 1652 212 0 36 0 chr1 139923542 139923570 -57271862 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1652 615 71 0 0 chr1 139923570 139923646 -57271786 - B1_Mur4 SINE Alu -8 142 67 5 1652 3357 57 0 0 chr1 139923954 139924375 -57271057 + L1Md_F2 LINE L1 6150 6570 -12 5 1652 720 0 0 0 chr1 139925422 139925502 -57269930 + (TCTCC)n Simple_repeat Simple_repeat 1 80 0 5 1652 964 268 17 44 chr1 139926260 139926553 -57268879 + LTR89 LTR ERVL? 583 867 -12 5 1652 3582 52 2 0 chr1 139927395 139927861 -57267571 + L1Md_F2 LINE L1 5120 5586 -297 5 1652 8271 43 0 6 chr1 139927862 139928863 -57266569 + L1Md_F2 LINE L1 5588 6582 0 5 1652 240 286 0 0 chr1 139928948 139929004 -57266428 + (TATG)n Simple_repeat Simple_repeat 2 57 0 5 1652 389 300 104 65 chr1 139929794 139930072 -57265360 - MER57D LTR ERV1 0 411 123 5 1652 929 58 0 0 chr1 139930579 139930700 -57264732 - B1_Mus1 SINE Alu 0 148 28 5 1652 199 379 0 0 chr1 139931314 139931380 -57264052 - L2c LINE L2 -224 3163 3098 5 1652 312 27 0 0 chr1 139932401 139932438 -57262994 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1652 1458 228 36 14 chr1 139932807 139933167 -57262265 + ORR1D2 LTR MaLR 1 368 -2 5 1652 657 217 0 16 chr1 139933424 139933607 -57261825 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1652 258 32 0 0 chr1 139935007 139935038 -57260394 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1652 357 257 136 45 chr1 139935041 139935196 -57260236 - B2_Mm2 SINE B2 -25 170 2 6 1652 356 327 28 114 chr1 139935332 139935508 -57259924 + MLT1J LTR MaLR 113 273 -239 6 1652 333 0 0 0 chr1 139936327 139936364 -57259068 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1652 452 346 41 59 chr1 139936388 139936658 -57258774 - B4 SINE B4 0 292 28 6 1652 1083 132 0 0 chr1 139937492 139937666 -57257766 + (TTCTC)n Simple_repeat Simple_repeat 4 177 0 6 1652 203 88 0 29 chr1 139937666 139937701 -57257731 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 6 1652 459 0 0 0 chr1 139937701 139937752 -57257680 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1652 234 0 0 0 chr1 139938089 139938115 -57257317 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1652 365 347 0 0 chr1 139940733 139940903 -57254529 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 1652 291 146 0 0 chr1 139940922 139940977 -57254455 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1652 480 254 0 0 chr1 139942347 139942481 -57252951 + (TA)n Simple_repeat Simple_repeat 1 134 0 6 1652 23 0 0 0 chr1 139942504 139942527 -57252905 + AT_rich Low_complexity Low_complexity 1 23 0 6 1652 408 188 29 38 chr1 139944004 139944109 -57251323 - Lx9 LINE L1 -276 7368 7265 6 1652 595 193 44 0 chr1 139944102 139944237 -57251195 + Lx9 LINE L1 7356 7496 -148 6 1652 206 203 26 39 chr1 139944244 139944321 -57251111 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1652 600 154 62 11 chr1 139944323 139944500 -57250932 + Lx9 LINE L1 7458 7643 -1 6 1652 379 283 11 0 chr1 139944618 139944710 -57250722 + B4A SINE B4 1 93 -199 6 1652 750 210 43 27 chr1 139945733 139945919 -57249513 + Lx4B LINE L1 6819 7007 -51 6 1652 1027 119 0 0 chr1 139945949 139946092 -57249340 + B1_Mus2 SINE Alu 1 143 -4 6 1652 450 0 0 0 chr1 139946095 139946145 -57249287 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1652 35038 65 2 4 chr1 139946693 139952936 -57242496 - L1Md_F2 LINE L1 -2 6583 252 6 1652 344 59 20 0 chr1 139953188 139953239 -57242193 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1652 823 236 5 43 chr1 139953656 139953864 -57241568 + B3 SINE B2 2 201 -15 6 1652 816 126 21 14 chr1 139953922 139954067 -57241365 - URR1A DNA MER1_type -1 225 80 6 1652 226 271 0 0 chr1 139955845 139955893 -57239539 - B4 SINE B4 -156 136 89 6 1652 191 36 0 35 chr1 139955906 139955935 -57239497 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1652 2547 69 50 11 chr1 139956219 139956352 -57239080 - L1_Mus4 LINE L1 -3 6633 6503 6 1652 333 0 0 0 chr1 139956352 139956389 -57239043 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1652 2547 69 50 11 chr1 139956389 139956635 -57238797 - L1_Mus4 LINE L1 -134 6502 6240 6 1652 287 312 0 0 chr1 139956651 139956715 -57238717 - RSINE1 SINE B4 -81 84 21 6 1652 1093 143 143 0 chr1 139956879 139957075 -57238357 + URR1B DNA MER1_type 2 225 0 6 1652 423 0 0 0 chr1 139957219 139957266 -57238166 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1652 405 0 0 0 chr1 139957266 139957310 -57238122 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1652 306 0 0 0 chr1 139957919 139957953 -57237479 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1652 396 0 0 0 chr1 139958331 139958375 -57237057 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1652 229 292 41 130 chr1 139958423 139958592 -57236840 - B4A SINE B4 -18 274 121 6 1652 225 0 0 0 chr1 139958992 139959017 -57236415 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 1652 231 203 0 0 chr1 139960796 139960865 -57234567 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1652 296 329 131 80 chr1 139962022 139962435 -57232997 + MLT1H LTR MaLR 114 547 -2 6 1652 224 229 0 20 chr1 139962564 139962613 -57232819 + GA-rich Low_complexity Low_complexity 5 52 0 6 1652 365 311 40 16 chr1 139963868 139963992 -57231440 + RSINE1 SINE B4 15 141 -24 6 1652 273 57 0 0 chr1 139963996 139964031 -57231401 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1652 7100 113 16 16 chr1 139965155 139966485 -57228947 + Lx LINE L1 5316 6633 -21 6 1652 48 18 0 0 chr1 139966485 139966540 -57228892 + AT_rich Low_complexity Low_complexity 1 55 0 6 1652 244 287 9 27 chr1 139966933 139967044 -57228388 + GA-rich Low_complexity Low_complexity 1 109 0 6 1652 180 77 0 0 chr1 139968309 139968335 -57227097 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1652 21 0 0 0 chr1 139968379 139968400 -57227032 + AT_rich Low_complexity Low_complexity 1 21 0 6 1652 183 80 0 0 chr1 139969885 139969910 -57225522 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 6 1652 870 132 14 14 chr1 139969929 139970067 -57225365 - B1_Mur4 SINE Alu -8 142 5 6 1652 26 30 0 0 chr1 139970401 139970434 -57224998 + AT_rich Low_complexity Low_complexity 1 33 0 6 1652 828 181 94 45 chr1 139970434 139970636 -57224796 - RMER1C Other Other -1 1341 1130 6 1652 1284 308 40 23 chr1 139970951 139971380 -57224052 + MTE-int LTR MaLR 657 1092 -488 6 1652 317 252 20 185 chr1 139971969 139972120 -57223312 + MTEa LTR MaLR 246 371 -8 6 1652 411 296 78 43 chr1 139972470 139972700 -57222732 + RMER15 LTR ERVL 334 571 -4 6 1652 227 291 55 0 chr1 139973741 139973851 -57221581 + L1MA5 LINE L1 6181 6296 -4 6 1652 26 0 0 0 chr1 139975399 139975425 -57220007 + AT_rich Low_complexity Low_complexity 1 26 0 6 1652 368 258 0 41 chr1 139976886 139976983 -57218449 + RSINE1 SINE B4 12 104 -61 6 1652 297 0 0 0 chr1 139977043 139977076 -57218356 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1652 192 40 0 0 chr1 139978356 139978381 -57217051 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1652 221 163 0 20 chr1 139978764 139978814 -57216618 + CT-rich Low_complexity Low_complexity 4 52 0 6 1652 342 0 0 0 chr1 139979810 139979848 -57215584 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1652 618 191 0 0 chr1 139979852 139979978 -57215454 + (TA)n Simple_repeat Simple_repeat 1 126 0 6 1652 313 68 114 0 chr1 139979978 139980022 -57215410 - HAL1-3A_ME LINE L1 -846 2012 1964 6 1652 362 328 61 37 chr1 139981280 139981575 -57213857 + Kanga2_a DNA Tc2 81 382 -506 6 1652 1619 241 23 6 chr1 139981595 139981941 -57213491 + Lx5 LINE L1 6652 7003 -47 6 1652 369 355 51 48 chr1 139982508 139982819 -57212613 + MLT1C LTR MaLR 154 465 -2 6 1652 21 82 0 0 chr1 139982821 139982870 -57212562 + AT_rich Low_complexity Low_complexity 1 49 0 6 1652 313 387 35 31 chr1 139983082 139983311 -57212121 + L1MC LINE L1 5514 5743 -2139 6 1652 324 0 0 0 chr1 139983390 139983426 -57212006 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1652 640 231 0 0 chr1 139983452 139983569 -57211863 - B3A SINE B2 -81 117 1 6 1652 1072 288 40 27 chr1 139983583 139983883 -57211549 + MTEa LTR MaLR 6 309 -70 6 1652 278 343 113 11 chr1 139983930 139984107 -57211325 + MER58A DNA MER1_type 20 214 -10 6 1652 212 266 16 0 chr1 139984209 139984273 -57211159 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 6 1652 21 0 0 0 chr1 139984304 139984325 -57211107 + AT_rich Low_complexity Low_complexity 1 21 0 6 1653 772 147 0 13 chr1 139985397 139985549 -57209883 + GA-rich Low_complexity Low_complexity 3 152 0 6 1653 714 193 11 6 chr1 139986562 139986739 -57208693 + CT-rich Low_complexity Low_complexity 3 180 0 6 1653 198 0 0 0 chr1 139987010 139987032 -57208400 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1653 669 267 46 5 chr1 139987164 139987360 -57208072 - B3 SINE B2 -12 204 1 6 1653 183 325 78 17 chr1 139987861 139987977 -57207455 - L2a LINE L2 -63 3363 3241 6 1653 261 0 0 0 chr1 139988815 139988844 -57206588 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1653 198 385 57 0 chr1 139990250 139990372 -57205060 + MIR SINE MIR 28 156 -106 6 1653 762 43 0 0 chr1 139991350 139991444 -57203988 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 1653 321 311 36 57 chr1 139992353 139992493 -57202939 + L1MC LINE L1 3737 3873 -2273 6 1653 327 25 0 0 chr1 139992533 139992573 -57202859 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1653 225 0 0 0 chr1 139992573 139992597 -57202835 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1653 520 193 0 0 chr1 139992608 139992696 -57202736 + MT2A LTR ERVL 1 88 -445 6 1653 766 228 53 127 chr1 139992760 139993007 -57202425 + MT2A LTR ERVL 99 486 -115 6 1653 4598 88 199 5 chr1 139993020 139993800 -57201632 + Lx3_Mus LINE L1 6076 7006 -3 6 1653 727 268 59 133 chr1 139993923 139994328 -57201104 + MTE2b LTR MaLR 1 375 -4 6 1653 516 335 18 42 chr1 139994340 139994508 -57200924 + RSINE1 SINE B4 2 165 0 6 1653 1607 279 80 14 chr1 139994540 139995038 -57200394 + MTE2b-int LTR MaLR 1 531 -1049 6 1653 787 317 152 0 chr1 139995083 139995373 -57200059 + MTEb LTR MaLR 6 339 -40 6 1653 23 33 0 0 chr1 139997483 139997513 -57197919 + AT_rich Low_complexity Low_complexity 1 30 0 6 1653 428 240 10 10 chr1 139997893 139997990 -57197442 + Lx9 LINE L1 5861 5957 -1687 6 1653 2732 280 65 35 chr1 139998197 139999283 -57196149 + Lx9 LINE L1 6511 7629 -15 6 1653 244 352 61 25 chr1 140000057 140000220 -57195212 - MIR SINE MIR 0 262 94 1 1653 983 43 21 28 chr1 140000648 140000793 -57194639 - L1Md_F3 LINE L1 0 6584 6441 2 1653 7290 32 1 0 chr1 140000793 140001654 -57193778 + L1Md_T LINE L1 5594 6455 -127 3 1653 315 369 64 34 chr1 140002030 140002266 -57193166 + MT2A LTR ERVL 272 544 -10 4 1653 337 336 83 57 chr1 140005660 140006032 -57189400 - L1MD LINE L1 -750 5396 5015 5 1653 180 111 0 0 chr1 140006204 140006231 -57189201 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1653 183 129 0 0 chr1 140006270 140006301 -57189131 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1653 372 350 29 0 chr1 140006312 140006415 -57189017 - RSINE1 SINE B4 -56 109 4 8 1653 306 331 41 103 chr1 140006715 140006860 -57188572 - B1F1 SINE Alu -13 136 1 9 1653 301 298 30 8 chr1 140006879 140006972 -57188460 + CT-rich Low_complexity Low_complexity 41 136 0 1 1653 465 81 46 0 chr1 140006972 140007059 -57188373 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1 1653 301 298 30 8 chr1 140007059 140007097 -57188335 + polypyrimidine Low_complexity Low_complexity 3 40 0 1 1653 21 0 0 0 chr1 140007689 140007710 -57187722 + AT_rich Low_complexity Low_complexity 1 21 0 1 1653 24 0 0 0 chr1 140008071 140008095 -57187337 + AT_rich Low_complexity Low_complexity 1 24 0 1 1653 288 271 105 61 chr1 140009379 140009493 -57185939 - B1F SINE Alu -7 142 24 1 1653 800 176 0 13 chr1 140009760 140009910 -57185522 - B1_Mus1 SINE Alu 0 148 1 1 1653 226 368 42 0 chr1 140010685 140010829 -57184603 + L2a LINE L2 3272 3421 -5 1 1653 214 283 17 0 chr1 140011109 140011169 -57184263 + (TATG)n Simple_repeat Simple_repeat 4 64 0 1 1653 581 321 111 0 chr1 140011198 140011450 -57183982 - B4A SINE B4 -12 280 1 1 1653 1159 178 43 0 chr1 140012770 140012978 -57182454 - URR1B DNA MER1_type 0 225 9 2 1653 449 67 11 43 chr1 140015736 140015830 -57179602 + (CAAAA)n Simple_repeat Simple_repeat 2 92 0 2 1653 492 62 0 0 chr1 140017398 140017462 -57177970 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1653 387 0 0 0 chr1 140017959 140018002 -57177430 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1653 302 215 21 0 chr1 140019314 140019407 -57176025 + (CATA)n Simple_repeat Simple_repeat 4 98 0 2 1653 213 39 0 0 chr1 140019481 140019507 -57175925 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1653 21 36 0 0 chr1 140019546 140019574 -57175858 + AT_rich Low_complexity Low_complexity 1 28 0 2 1653 1079 108 0 14 chr1 140019793 140020000 -57175432 + (GGAAA)n Simple_repeat Simple_repeat 1 203 0 2 1653 25 83 0 0 chr1 140020457 140020517 -57174915 + AT_rich Low_complexity Low_complexity 1 60 0 2 1653 513 47 0 0 chr1 140020529 140020593 -57174839 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1653 662 145 23 53 chr1 140020617 140020748 -57174684 - B2_Mm2 SINE B2 -68 127 1 3 1653 366 80 0 0 chr1 140023293 140023343 -57172089 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1653 956 261 58 65 chr1 140025108 140025386 -57170046 - B4A SINE B4 -4 288 13 3 1653 609 14 0 0 chr1 140025450 140025520 -57169912 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1653 357 24 0 0 chr1 140026442 140026484 -57168948 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1653 200 247 0 38 chr1 140026495 140026575 -57168857 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 3 1653 257 257 39 142 chr1 140027699 140027826 -57167606 + PB1D10 SINE Alu 1 114 -3 3 1653 624 14 0 0 chr1 140027899 140027972 -57167460 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1653 297 362 16 16 chr1 140029286 140029415 -57166017 + ID_B1 SINE B4 79 207 -17 3 1653 652 75 0 0 chr1 140029511 140029605 -57165827 + L1_Mus1 LINE L1 6474 6567 0 3 1653 219 261 46 0 chr1 140029739 140029804 -57165628 + PB1D10 SINE Alu 43 110 -7 4 1653 3138 212 35 8 chr1 140029828 140030451 -57164981 + Lx6 LINE L1 6810 7449 -11 4 1653 942 141 0 4 chr1 140030510 140030780 -57164652 + (TCC)n Simple_repeat Simple_repeat 1 269 0 4 1653 367 346 3 15 chr1 140031818 140031948 -57163484 - B1F1 SINE Alu 0 127 5 4 1653 310 290 109 0 chr1 140032002 140032140 -57163292 + L1MA4A LINE L1 5783 5935 -368 4 1653 205 270 0 0 chr1 140032565 140032628 -57162804 + A-rich Low_complexity Low_complexity 1 63 0 4 1653 405 0 0 0 chr1 140032684 140032729 -57162703 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1653 1121 140 109 10 chr1 140034122 140034324 -57161108 + URR1A DNA MER1_type 5 226 0 4 1653 551 317 11 37 chr1 140034379 140034569 -57160863 + ID_B1 SINE B4 1 185 -39 4 1653 744 299 12 98 chr1 140034650 140034905 -57160527 - ID_B1 SINE B4 -50 242 11 4 1653 1236 158 10 0 chr1 140034990 140035192 -57160240 + URR1B DNA MER1_type 2 205 -20 5 1653 570 29 0 0 chr1 140035456 140035524 -57159908 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1653 1733 140 0 37 chr1 140035558 140035854 -57159578 - L1_Mus4 LINE L1 -229 5654 5370 5 1653 7139 92 5 37 chr1 140035834 140036869 -57158563 + L1_Mus4 LINE L1 5629 6630 -6 5 1653 756 300 62 28 chr1 140037464 140037886 -57157546 + L1MA6 LINE L1 5621 6056 -244 5 1653 343 246 77 26 chr1 140037948 140038065 -57157367 + L1MA6 LINE L1 6178 6300 0 5 1653 24 32 0 0 chr1 140038177 140038208 -57157224 + AT_rich Low_complexity Low_complexity 1 31 0 5 1653 293 221 13 0 chr1 140039308 140039385 -57156047 + PB1D10 SINE Alu 33 110 -7 5 1653 201 304 0 18 chr1 140039386 140039443 -57155989 + GA-rich Low_complexity Low_complexity 2 57 0 5 1653 317 330 92 11 chr1 140041630 140041814 -57153618 + L1MD3 LINE L1 7787 7985 -10 5 1653 305 304 0 129 chr1 140043703 140043835 -57151597 - B1F2 SINE Alu -32 117 3 5 1653 452 241 53 70 chr1 140043901 140044088 -57151344 + Lx7 LINE L1 7501 7684 -12 5 1653 690 101 0 0 chr1 140044285 140044394 -57151038 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 6 1653 288 77 0 0 chr1 140046337 140046376 -57149056 + (TCC)n Simple_repeat Simple_repeat 2 40 0 6 1653 239 267 0 85 chr1 140048667 140048749 -57146683 - PB1D10 SINE Alu 0 117 43 6 1653 21 36 0 0 chr1 140050136 140050164 -57145268 + AT_rich Low_complexity Low_complexity 1 28 0 6 1653 209 279 72 35 chr1 140050329 140050471 -57144961 - MIR SINE MIR -113 163 9 6 1653 468 0 0 0 chr1 140051064 140051116 -57144316 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1653 297 0 0 0 chr1 140051116 140051148 -57144284 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1653 855 316 124 5 chr1 140052091 140052510 -57142922 + L1MA6 LINE L1 5817 6285 -15 6 1653 713 203 0 0 chr1 140053150 140053278 -57142154 + B1_Mus2 SINE Alu 2 129 -18 6 1653 809 209 17 0 chr1 140054010 140054182 -57141250 + Lx5 LINE L1 6875 7049 -1 6 1653 540 0 0 0 chr1 140054187 140054247 -57141185 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1653 282 95 0 0 chr1 140054824 140054866 -57140566 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1653 27 0 0 0 chr1 140055378 140055405 -57140027 + AT_rich Low_complexity Low_complexity 1 27 0 7 1653 1429 221 78 12 chr1 140056963 140057376 -57138056 + Lx9 LINE L1 7197 7636 -8 7 1653 31 44 0 0 chr1 140057537 140057582 -57137850 + AT_rich Low_complexity Low_complexity 1 45 0 7 1653 748 216 78 28 chr1 140058663 140058890 -57136542 - Lx5 LINE L1 -72 6986 6715 7 1653 1075 94 11 52 chr1 140060337 140060528 -57134904 + Lx LINE L1 6465 6647 -7 7 1653 200 111 28 0 chr1 140060912 140060948 -57134484 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 7 1653 738 150 66 29 chr1 140061553 140061568 -57133864 - B1_Mur2 SINE Alu 0 149 137 7 1653 988 141 6 6 chr1 140061568 140061746 -57133686 + T-rich Low_complexity Low_complexity 2 179 0 7 1653 738 150 66 29 chr1 140061746 140061867 -57133565 - B1_Mur2 SINE Alu -13 136 8 7 1653 224 200 0 0 chr1 140062276 140062316 -57133116 - MIRc SINE MIR -110 158 119 8 1653 27 0 0 0 chr1 140063828 140063855 -57131577 + AT_rich Low_complexity Low_complexity 1 27 0 8 1653 29 0 0 0 chr1 140065711 140065740 -57129692 + AT_rich Low_complexity Low_complexity 1 29 0 8 1653 24 67 0 0 chr1 140066644 140066689 -57128743 + AT_rich Low_complexity Low_complexity 1 45 0 8 1653 28 0 0 0 chr1 140067624 140067652 -57127780 + AT_rich Low_complexity Low_complexity 1 28 0 8 1653 272 288 0 0 chr1 140067744 140067810 -57127622 + CT-rich Low_complexity Low_complexity 3 68 0 8 1653 182 163 0 39 chr1 140068189 140068240 -57127192 + GA-rich Low_complexity Low_complexity 4 52 0 8 1653 441 138 0 0 chr1 140072810 140072890 -57122542 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 1653 294 167 0 0 chr1 140072922 140072982 -57122450 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1653 1021 297 35 48 chr1 140072982 140073445 -57121987 - Lx9 LINE L1 -196 7448 6992 8 1653 380 195 26 13 chr1 140073646 140073724 -57121708 - HAL1-3A_ME LINE L1 -804 2054 1976 9 1653 242 215 15 0 chr1 140073724 140073789 -57121643 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1653 849 262 88 11 chr1 140073798 140074060 -57121372 - B4A SINE B4 -10 282 1 9 1653 2229 266 86 43 chr1 140074263 140075081 -57120351 + Lx9 LINE L1 6357 7209 -435 9 1653 1555 172 160 18 chr1 140075082 140075420 -57120012 - RMER15 LTR ERVL -4 571 186 9 1653 1545 278 8 54 chr1 140075437 140076017 -57119415 - Lx6 LINE L1 -21 7439 6550 9 1653 456 161 50 70 chr1 140076017 140076117 -57119315 - RMER15 LTR ERVL -374 201 104 9 1653 2070 193 194 7 chr1 140076197 140076661 -57118771 - RMER15 LTR ERVL -19 556 6 9 1653 394 201 13 136 chr1 140076663 140076768 -57118664 - RMER15-int LTR ERVL -23 4976 4889 9 1653 1742 179 67 38 chr1 140076768 140077139 -57118293 + ORR1C2 LTR MaLR 1 382 -2 9 1653 394 201 13 136 chr1 140077139 140077188 -57118244 - RMER15-int LTR ERVL -111 4888 4841 9 1653 6588 177 159 10 chr1 140077212 140079110 -57116322 + L1_Mur1 LINE L1 898 3112 -2774 9 1653 5517 133 65 9 chr1 140079103 140080125 -57115307 + L1_Mur1 LINE L1 3892 4970 -907 9 1653 515 59 0 0 chr1 140080122 140080190 -57115242 + Lx4B LINE L1 5809 5876 -1182 9 1653 2127 221 24 16 chr1 140080172 140080683 -57114749 + Lx2B LINE L1 6486 7000 0 1 1653 645 274 17 23 chr1 140083911 140084108 -57111324 + B3A SINE B2 6 191 -4 1 1653 836 240 25 0 chr1 140084201 140084401 -57111031 + B3 SINE B2 1 205 -11 1 1653 670 215 215 0 chr1 140085308 140085485 -57109947 - B3 SINE B2 0 216 2 1 1653 199 140 20 20 chr1 140086771 140086822 -57108610 + CT-rich Low_complexity Low_complexity 1 51 0 1 1653 348 83 0 0 chr1 140087132 140087180 -57108252 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1653 545 129 11 0 chr1 140087912 140088005 -57107427 + (TCCC)n Simple_repeat Simple_repeat 4 97 0 1 1653 652 259 107 20 chr1 140089474 140089671 -57105761 + B3 SINE B2 3 216 0 1 1653 1363 229 58 30 chr1 140089816 140090229 -57105203 + RMER10A LTR ERVL 1 442 0 1 1653 1103 81 0 13 chr1 140090370 140090520 -57104912 - B1_Mus1 SINE Alu 0 148 1 1 1653 755 279 47 35 chr1 140090520 140090858 -57104574 + RLTR15 LTR ERVK 2 343 -16 1 1653 229 283 43 21 chr1 140091415 140091509 -57103923 - ORR1D2 LTR MaLR -29 341 246 1 1653 436 292 18 0 chr1 140092888 140092995 -57102437 + ORR1E LTR MaLR 1 109 -250 1 1653 257 269 30 0 chr1 140092995 140093062 -57102370 - MTEa LTR MaLR 0 379 311 1 1653 387 345 77 47 chr1 140093931 140094230 -57101202 - L1M5 LINE L1 -743 5403 5106 1 1653 228 35 0 0 chr1 140094230 140094259 -57101173 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1653 387 345 77 47 chr1 140094259 140094363 -57101069 - L1M5 LINE L1 -1041 5105 4989 1 1653 899 243 10 10 chr1 140094404 140094612 -57100820 + B3 SINE B2 6 213 -3 1 1653 307 335 39 5 chr1 140095017 140095221 -57100211 - L1M5 LINE L1 -1351 4795 4585 1 1653 354 98 0 0 chr1 140095769 140095820 -57099612 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1653 282 116 0 0 chr1 140096283 140096326 -57099106 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1 1653 268 259 68 34 chr1 140096467 140096555 -57098877 - MER34 LTR ERV1 -362 180 90 1 1653 225 277 69 46 chr1 140096555 140096642 -57098790 + LTR81C LTR ERV1? 192 280 -873 1 1653 408 288 118 29 chr1 140096578 140096714 -57098718 - LTR48 LTR ERV1 -639 148 1 1 1653 248 53 26 0 chr1 140096853 140096891 -57098541 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1653 1497 272 136 10 chr1 140098114 140098244 -57097188 + MER67C LTR ERV1 9 156 -555 1 1653 339 85 0 0 chr1 140098244 140098291 -57097141 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1653 1497 272 136 10 chr1 140098291 140098784 -57096648 + MER67C LTR ERV1 157 711 0 1 1653 343 252 133 42 chr1 140099097 140099217 -57096215 + Arthur1B DNA Tip100 15 145 -1080 1 1653 206 163 20 0 chr1 140099394 140099443 -57095989 + A-rich Low_complexity Low_complexity 2 51 0 1 1653 306 0 0 0 chr1 140100593 140100627 -57094805 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1653 594 264 15 15 chr1 140100628 140100759 -57094673 - B3A SINE B2 -56 142 12 1 1653 204 40 0 0 chr1 140100851 140100876 -57094556 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1653 1034 38 0 0 chr1 140100876 140101008 -57094424 - B1_Mm SINE Alu 0 147 16 1 1653 23 0 0 0 chr1 140101196 140101219 -57094213 + AT_rich Low_complexity Low_complexity 1 23 0 1 1653 219 229 62 0 chr1 140102206 140102254 -57093178 + ID4_ SINE ID 32 82 -1 1 1653 907 261 76 47 chr1 140104415 140104886 -57090546 - L1MEc LINE L1 -5470 930 446 1 1653 227 352 19 0 chr1 140104928 140105036 -57090396 + CT-rich Low_complexity Low_complexity 4 113 0 1 1653 291 370 62 22 chr1 140105151 140105375 -57090057 - L2 LINE L2 -1164 2255 2023 1 1653 213 121 0 0 chr1 140105664 140105697 -57089735 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1 1653 643 150 88 0 chr1 140105698 140105811 -57089621 - B1_Mur4 SINE Alu -6 144 22 1 1653 286 235 45 125 chr1 140105730 140105842 -57089590 - MT2B LTR ERVL -347 254 152 1 1653 1000 189 219 0 chr1 140105995 140106233 -57089199 - ORR1B1 LTR MaLR -104 290 1 1 1653 555 96 0 0 chr1 140106935 140107018 -57088414 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1653 528 16 0 0 chr1 140107018 140107079 -57088353 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1 1653 536 206 125 16 chr1 140107081 140107273 -57088159 + L1_Mur3 LINE L1 290 502 -7210 1 1653 281 359 78 41 chr1 140107432 140107676 -57087756 - MLT1I LTR MaLR -6 405 153 1 1653 204 125 0 0 chr1 140107836 140107868 -57087564 + (AGGGGG)n Simple_repeat Simple_repeat 1 32 0 1 1653 260 264 0 0 chr1 140108398 140108451 -57086981 + polypyrimidine Low_complexity Low_complexity 5 57 0 1 1653 8918 97 21 8 chr1 140108569 140109968 -57085464 - Lx3C LINE L1 -4 6972 5547 1 1653 230 0 33 0 chr1 140110316 140110346 -57085086 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1653 955 225 29 24 chr1 140110761 140110809 -57084623 - B3 SINE B2 -5 211 167 1 1653 282 73 0 0 chr1 140110809 140110850 -57084582 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1653 955 225 29 24 chr1 140110850 140111006 -57084426 - B3 SINE B2 -50 166 7 1 1653 23 0 0 0 chr1 140112345 140112368 -57083064 + AT_rich Low_complexity Low_complexity 1 23 0 1 1653 425 262 54 29 chr1 140112457 140112805 -57082627 + L1ME2 LINE L1 1298 1700 -4715 1 1653 321 294 66 71 chr1 140112832 140113015 -57082417 + L1ME2 LINE L1 1728 1909 -4491 1 1653 325 353 29 22 chr1 140113192 140113328 -57082104 + RSINE1 SINE B4 12 148 -17 1 1653 410 53 0 17 chr1 140113339 140113397 -57082035 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1653 454 300 111 28 chr1 140113480 140113696 -57081736 + L1ME2 LINE L1 2459 2692 -3627 1 1653 4068 70 2 0 chr1 140113737 140114326 -57081106 - MusHAL1 LINE L1 -1870 842 253 1 1653 788 267 61 47 chr1 140114368 140114647 -57080785 + RLTR20D LTR ERVK 1 283 -285 1 1653 386 278 113 40 chr1 140114631 140114693 -57080739 + RLTR20D LTR ERVK 418 490 -88 1 1653 219 114 0 0 chr1 140114693 140114728 -57080704 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1653 386 278 113 40 chr1 140114728 140114815 -57080617 + RLTR20D LTR ERVK 491 577 -1 1 1653 555 295 143 41 chr1 140114836 140115393 -57080039 + L1ME2 LINE L1 2788 3399 -2920 1 206 1313 284 107 21 chr1 140115396 140117213 -57078219 + L1M4c LINE L1 972 2958 -3424 1 1654 801 181 0 14 chr1 140117393 140117539 -57077893 + B1_Mus1 SINE Alu 3 146 -2 1 1654 330 226 36 95 chr1 140117546 140117683 -57077749 + L1M4c LINE L1 2978 3106 -3276 1 1654 2674 124 33 29 chr1 140117811 140118260 -57077172 + RLTR11B LTR ERVK 3 453 0 1 1654 594 232 31 16 chr1 140118260 140118387 -57077045 + B1_Mur1 SINE Alu 15 143 -6 1 1654 204 125 0 0 chr1 140118394 140118426 -57077006 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 1 1654 1887 104 116 9 chr1 140118524 140118843 -57076589 + RLTR15 LTR ERVK 3 355 -4 1 1654 23 0 0 0 chr1 140118864 140118887 -57076545 + AT_rich Low_complexity Low_complexity 1 23 0 1 1654 377 293 106 19 chr1 140119116 140119526 -57075906 + L1ME2 LINE L1 5538 5999 -338 1 1654 624 277 84 6 chr1 140119580 140119758 -57075674 + B3 SINE B2 1 192 -24 1 1654 263 304 28 49 chr1 140119919 140120061 -57075371 + L1MA10 LINE L1 6182 6320 -14 1 1654 240 192 0 0 chr1 140121896 140121948 -57073484 + C-rich Low_complexity Low_complexity 1 52 0 1 1654 681 290 21 16 chr1 140121949 140122135 -57073297 - B4A SINE B4 -103 189 3 1 1654 737 181 0 61 chr1 140122320 140122467 -57072965 + B1_Mur4 SINE Alu 12 149 -1 1 1654 1409 151 143 0 chr1 140122811 140123090 -57072342 + IAPLTR4_I LTR ERVK 14 332 0 1 1654 10826 66 8 6 chr1 140123090 140124724 -57070708 + IAPLTR4_I LTR ERVK 1 1599 -6081 1 1654 1349 207 106 52 chr1 140124816 140125329 -57070103 + IAPEY3-int LTR ERVK 237 820 -4586 1 1654 639 193 0 0 chr1 140125538 140125657 -57069775 + IAPEY3-int LTR ERVK 2635 2753 -4653 1 1654 1887 139 104 8 chr1 140125683 140126277 -57069155 + IAPEY3-int LTR ERVK 3567 4271 -3135 1 1654 466 189 19 0 chr1 140126282 140126388 -57069044 + MMETn-int LTR ERVK 2357 2464 -2380 1 1654 795 69 17 8 chr1 140126414 140126531 -57068901 + IAPEY3-int LTR ERVK 4530 4647 -2934 1 1654 3205 84 0 16 chr1 140126812 140127259 -57068173 + IAPEY3-int LTR ERVK 5203 5642 -1939 1 1654 3214 97 0 2 chr1 140127250 140127705 -57067727 + IAPEY3-int LTR ERVK 5761 6214 -1367 1 1654 4506 72 47 0 chr1 140127695 140128591 -57066841 + IAPEY3-int LTR ERVK 6743 7680 0 1 1654 1627 145 78 0 chr1 140128599 140128895 -57066537 + IAPEY3_LTR LTR ERVK 14 332 0 1 1654 392 267 43 36 chr1 140129897 140130037 -57065395 + MLT1A0 LTR MaLR 214 354 -11 1 1654 491 304 0 0 chr1 140131419 140131531 -57063901 + ID_B1 SINE B4 84 195 -29 1 1654 244 284 48 87 chr1 140131805 140131909 -57063523 + B3 SINE B2 117 216 0 1 1654 315 0 0 0 chr1 140132235 140132270 -57063162 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1654 852 226 54 5 chr1 140132397 140132602 -57062830 + B3 SINE B2 2 216 0 1 1654 347 301 58 48 chr1 140132957 140133190 -57062242 + L1MA6 LINE L1 5215 5453 -721 1 1654 23 33 0 0 chr1 140133464 140133494 -57061938 + AT_rich Low_complexity Low_complexity 1 30 0 1 1654 1103 95 0 0 chr1 140133505 140133652 -57061780 + B1_Mus1 SINE Alu 2 148 0 1 1654 1005 92 0 0 chr1 140133669 140133811 -57061621 + (GGGGA)n Simple_repeat Simple_repeat 5 146 0 1 1654 529 264 117 43 chr1 140133811 140134214 -57061218 + L1MA6 LINE L1 5816 6244 -56 1 1654 678 228 19 96 chr1 140134223 140134432 -57061000 + B3A SINE B2 2 194 -4 1 1654 455 211 110 0 chr1 140134549 140134658 -57060774 + ORR1E LTR MaLR 1 121 -238 1 1654 789 107 7 13 chr1 140134992 140135143 -57060289 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 1 1654 470 302 98 6 chr1 140135400 140135583 -57059849 + ORR1E LTR MaLR 122 321 -38 1 1654 292 296 79 53 chr1 140135602 140135716 -57059716 + Charlie7 DNA MER1_type 2085 2201 -411 1 1654 296 164 0 15 chr1 140136819 140136887 -57058545 + GA-rich Low_complexity Low_complexity 2 68 0 1 1654 1230 48 0 0 chr1 140137137 140137282 -57058150 + B1_Mus2 SINE Alu 1 145 -2 1 1654 279 0 0 0 chr1 140137282 140137313 -57058119 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1654 1091 60 8 0 chr1 140137459 140137592 -57057840 + B1_Mus2 SINE Alu 2 135 -12 1 1654 296 48 24 0 chr1 140137594 140137636 -57057796 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1654 269 304 238 57 chr1 140137967 140138089 -57057343 + ID_B1 SINE B4 25 168 -56 1 1654 24 53 0 0 chr1 140138114 140138152 -57057280 + AT_rich Low_complexity Low_complexity 1 38 0 1 1654 10520 25 0 0 chr1 140138160 140139452 -57055980 + L1Md_T LINE L1 4295 5586 -297 1 1654 9001 7 0 0 chr1 140139452 140140448 -57054984 + L1Md_T LINE L1 5587 6582 0 1 1654 1827 220 25 17 chr1 140140517 140140878 -57054554 + MTD LTR MaLR 22 385 -34 1 1654 564 140 0 0 chr1 140140989 140141082 -57054350 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 1654 340 127 27 27 chr1 140143674 140143747 -57051685 + G-rich Low_complexity Low_complexity 1 73 0 1 1654 316 274 58 22 chr1 140144297 140144435 -57050997 + L1ME4a LINE L1 5977 6119 -5 1 1654 352 0 20 20 chr1 140144646 140144695 -57050737 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1654 594 0 0 0 chr1 140144730 140144796 -57050636 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1654 2163 198 91 20 chr1 140145195 140145230 -57050202 - RMER15 LTR ERVL 0 575 533 1 1654 411 56 0 0 chr1 140145230 140145284 -57050148 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1654 2163 198 91 20 chr1 140145284 140145785 -57049647 - RMER15 LTR ERVL -43 532 1 1 1654 378 0 0 0 chr1 140146395 140146437 -57048995 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1654 414 0 0 0 chr1 140146437 140146482 -57048950 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1654 352 258 13 48 chr1 140146482 140146592 -57048840 - B4A SINE B4 -148 144 36 2 1654 3153 56 2 8 chr1 140147903 140148299 -57047133 - MTA_Mm LTR MaLR -2 394 1 2 1654 180 111 0 0 chr1 140148560 140148587 -57046845 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1654 185 94 31 0 chr1 140148588 140148620 -57046812 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1654 400 373 28 0 chr1 140148621 140148763 -57046669 - RSINE1 SINE B4 -18 147 2 2 1654 6902 164 50 9 chr1 140148776 140150066 -57045366 - Lx5 LINE L1 -10 7040 5699 2 1654 509 213 87 0 chr1 140150078 140150205 -57045227 - Lx7 LINE L1 0 7696 7559 2 1654 2014 217 84 13 chr1 140150210 140150676 -57044756 + Lx5 LINE L1 6552 7050 0 2 1654 1040 81 0 7 chr1 140150676 140150825 -57044607 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 2 1654 1292 72 0 11 chr1 140150837 140151019 -57044413 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1654 297 0 0 0 chr1 140151021 140151054 -57044378 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 2 1654 268 248 53 58 chr1 140151056 140151227 -57044205 - Lx7 LINE L1 -124 7572 7403 2 1654 1720 204 116 4 chr1 140151226 140151953 -57043479 - Lx5 LINE L1 -6423 1305 498 2 1654 8159 131 18 29 chr1 140152055 140153871 -57041561 - Lx2A LINE L1 0 7008 5243 2 1654 1786 143 13 13 chr1 140153871 140154176 -57041256 - L1_Mus2 LINE L1 0 6566 6262 2 1654 7826 161 40 1 chr1 140154176 140155056 -57040376 - Lx2A LINE L1 -641 5242 4349 2 1654 194 366 12 35 chr1 140155293 140155378 -57040054 - MIRm SINE MIR -5 271 189 2 1654 278 303 65 8 chr1 140155913 140156036 -57039396 - B4 SINE B4 -159 133 4 2 1654 672 274 68 5 chr1 140157748 140157939 -57037493 - ID_B1 SINE B4 -19 205 3 2 1654 291 222 12 12 chr1 140158685 140158767 -57036665 - Lx7 LINE L1 -1 7695 7614 2 1654 6131 226 88 20 chr1 140158840 140158878 -57036554 - Lx7 LINE L1 -233 7463 7428 2 1654 276 30 0 0 chr1 140158878 140158911 -57036521 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1654 6131 227 86 21 chr1 140158911 140160672 -57034760 - Lx7 LINE L1 -269 7427 5513 2 1654 326 244 0 25 chr1 140161937 140162097 -57033335 + (TG)n Simple_repeat Simple_repeat 1 156 0 2 1654 1425 45 0 0 chr1 140162346 140162523 -57032909 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1654 696 83 0 0 chr1 140162523 140162619 -57032813 + (GGA)n Simple_repeat Simple_repeat 1 96 0 2 1654 235 296 271 0 chr1 140162926 140163098 -57032334 - MIRb SINE MIR 0 262 48 2 1654 287 345 46 0 chr1 140163733 140163820 -57031612 - RSINE1 SINE B4 -34 131 41 2 1654 218 170 0 41 chr1 140165157 140165206 -57030226 + (CAGA)n Simple_repeat Simple_repeat 1 47 0 2 1654 356 253 77 0 chr1 140165314 140165405 -57030027 + ORR1E LTR MaLR 14 111 -248 2 1654 609 320 61 52 chr1 140165868 140166178 -57029254 + ORR1E LTR MaLR 1 313 -46 2 1654 328 238 87 29 chr1 140166483 140166587 -57028845 + ID_B1 SINE B4 91 200 -24 2 1654 524 323 105 11 chr1 140168460 140168651 -57026781 + ID_B1 SINE B4 1 209 -15 2 1654 1146 122 0 0 chr1 140168653 140168833 -57026599 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1654 3150 115 3 0 chr1 140168864 140169316 -57026116 + Lx LINE L1 5721 6182 -472 2 1654 203 323 69 50 chr1 140170448 140170549 -57024883 + MIRb SINE MIR 1 103 -165 2 1654 464 32 0 16 chr1 140172304 140172367 -57023065 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1654 236 366 164 8 chr1 140175564 140175820 -57019612 + L2a LINE L2 3002 3297 -129 2 1654 200 333 81 0 chr1 140176367 140176454 -57018978 - MIRb SINE MIR -80 188 95 2 1654 449 320 46 26 chr1 140178704 140178855 -57016577 + RSINE1 SINE B4 6 159 -6 2 1654 26 0 0 0 chr1 140179574 140179600 -57015832 + AT_rich Low_complexity Low_complexity 1 26 0 2 1654 241 305 0 17 chr1 140179853 140179913 -57015519 - B3A SINE B2 -138 60 2 2 1654 304 295 13 0 chr1 140179992 140180070 -57015362 - B3A SINE B2 -96 102 24 2 1654 481 222 127 0 chr1 140180079 140180205 -57015227 + B1_Mur1 SINE Alu 4 145 -4 2 1654 712 251 56 56 chr1 140180984 140181122 -57014310 + B3 SINE B2 2 146 -70 2 1654 216 0 0 0 chr1 140181122 140181146 -57014286 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1654 712 251 56 56 chr1 140181146 140181222 -57014210 + B3 SINE B2 147 216 0 2 1654 331 262 0 0 chr1 140181550 140181611 -57013821 + ID4_ SINE ID 12 72 -11 2 1654 253 324 15 0 chr1 140181551 140181619 -57013813 + B4 SINE B4 13 81 -211 2 1654 287 259 140 45 chr1 140181967 140182145 -57013287 + L2a LINE L2 3219 3413 -13 2 1654 1350 180 0 22 chr1 140183245 140183472 -57011960 - URR1A DNA MER1_type 0 226 5 2 1654 645 249 95 35 chr1 140183599 140183799 -57011633 + ID_B1 SINE B4 13 224 0 2 1654 1163 168 47 9 chr1 140183853 140184064 -57011368 - URR1A DNA MER1_type -1 225 7 2 1654 568 158 8 109 chr1 140185627 140185755 -57009677 - B1_Mur3 SINE Alu 0 120 6 2 1654 627 14 0 0 chr1 140186974 140187046 -57008386 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1654 967 66 0 19 chr1 140187488 140187643 -57007789 + RMER17B LTR ERVK 312 463 -495 2 1654 291 28 0 0 chr1 140187715 140187751 -57007681 + (CCCTAA)n Simple_repeat Simple_repeat 2 37 0 2 1654 228 323 0 0 chr1 140189356 140189421 -57006011 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1654 496 151 35 0 chr1 140189491 140189577 -57005855 - PB1D10 SINE Alu -1 116 28 2 1654 743 282 38 16 chr1 140190673 140190861 -57004571 + B3A SINE B2 1 174 -24 2 1654 360 0 0 0 chr1 140190861 140190901 -57004531 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1654 549 287 5 96 chr1 140190901 140190920 -57004512 + B2_Mm2 SINE B2 171 189 -6 2 1654 3648 30 2 0 chr1 140192294 140192689 -57002743 - MTA_Mm LTR MaLR 0 396 1 2 1654 1549 144 5 0 chr1 140192731 140192953 -57002479 - URR1B DNA MER1_type 0 225 3 2 1654 190 338 12 38 chr1 140194256 140194336 -57001096 + L2a LINE L2 3349 3426 0 2 1654 1670 223 84 18 chr1 140194447 140194840 -57000592 - MTD LTR MaLR 0 419 1 2 1654 404 259 46 9 chr1 140195009 140195118 -57000314 + B1F SINE Alu 37 149 0 2 1654 346 224 0 38 chr1 140196662 140196741 -56998691 - BC1_Mm scRNA scRNA -76 76 1 2 1654 277 227 9 93 chr1 140196783 140196890 -56998542 - RMER10A LTR ERVL -27 415 318 2 1654 309 257 142 87 chr1 140197192 140197540 -56997892 + L1M3 LINE L1 4121 4499 -1641 2 1654 210 37 0 0 chr1 140197540 140197567 -56997865 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1654 309 257 142 87 chr1 140197567 140197691 -56997741 + L1M3 LINE L1 4500 4619 -1521 2 1654 201 74 0 0 chr1 140197819 140197846 -56997586 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2 1654 1985 304 56 17 chr1 140197869 140198569 -56996863 - Lx8 LINE L1 -198 7275 6549 2 1654 1835 236 12 12 chr1 140198581 140198992 -56996440 - MTD LTR MaLR -8 411 1 2 1654 329 256 92 0 chr1 140199000 140199127 -56996305 - Lx8 LINE L1 -1021 6452 6387 2 1654 715 270 68 71 chr1 140199192 140199503 -56995929 + Lx8 LINE L1 6068 6377 -1096 2 1654 468 0 0 0 chr1 140199700 140199752 -56995680 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1654 315 0 0 0 chr1 140199752 140199786 -56995646 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1654 215 224 0 0 chr1 140199803 140199852 -56995580 + (ATG)n Simple_repeat Simple_repeat 3 51 0 2 1654 372 22 0 0 chr1 140199854 140199899 -56995533 + (TGG)n Simple_repeat Simple_repeat 3 47 0 2 1654 246 252 0 40 chr1 140200151 140200300 -56995132 + (TATATG)n Simple_repeat Simple_repeat 5 147 0 2 1654 297 0 0 0 chr1 140200417 140200450 -56994982 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1654 241 336 35 43 chr1 140200741 140200856 -56994576 - MIRc SINE MIR -131 137 24 2 1654 38734 30 1 0 chr1 140201994 140208930 -56986502 - L1Md_T LINE L1 0 6585 1 2 1654 559 305 0 8 chr1 140209409 140209541 -56985891 + RSINE1 SINE B4 4 134 -31 2 1654 283 81 0 0 chr1 140210242 140210279 -56985153 + L1VL4 LINE L1 6 42 -6260 2 1654 17121 76 20 7 chr1 140210279 140213263 -56982169 + MusHAL1 LINE L1 4 3034 -319 2 1654 6016 212 57 33 chr1 140213260 140214598 -56980834 - Lx7 LINE L1 -740 6956 5587 2 1654 227 243 117 0 chr1 140214700 140214811 -56980621 - L1ME4a LINE L1 0 6124 6001 2 1654 1005 282 93 49 chr1 140216888 140217068 -56978364 + MTEa-int LTR MaLR 1150 1349 -231 2 1654 540 0 0 0 chr1 140217068 140217128 -56978304 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1654 1005 282 93 49 chr1 140217128 140217357 -56978075 + MTEa-int LTR MaLR 1350 1577 -3 2 1654 877 302 36 65 chr1 140217363 140217473 -56977959 + MTEa LTR MaLR 4 106 -273 2 1654 1967 171 103 92 chr1 140217473 140218028 -56977404 - RLTR31_Mm LTR ERVK 0 561 1 2 1654 877 302 36 65 chr1 140218028 140218253 -56977179 + MTEa LTR MaLR 107 329 -50 2 1654 1127 78 6 13 chr1 140218526 140218682 -56976750 + B2_Mm2 SINE B2 2 156 -39 2 1654 306 0 0 0 chr1 140218685 140218719 -56976713 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2 1654 190 244 24 0 chr1 140219613 140219654 -56975778 - MIRc SINE MIR -102 166 125 2 1654 460 281 86 30 chr1 140220157 140220205 -56975227 - MLT1A LTR MaLR 0 374 319 2 1654 1062 143 141 48 chr1 140220205 140220411 -56975021 - URR1B DNA MER1_type 0 225 1 2 1654 460 281 86 30 chr1 140220411 140220560 -56974872 - MLT1A LTR MaLR -56 318 167 2 1654 622 294 73 35 chr1 140220665 140220782 -56974650 - L1MA7 LINE L1 -138 6153 6037 2 1654 1084 176 102 0 chr1 140220782 140220987 -56974445 + URR1A DNA MER1_type 1 226 0 2 1654 622 294 73 35 chr1 140220987 140221155 -56974277 - L1MA7 LINE L1 -255 6036 5857 2 1654 270 309 21 21 chr1 140221208 140221304 -56974128 - MLT1A LTR MaLR -265 100 5 2 1654 284 64 0 21 chr1 140222351 140222399 -56973033 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1654 229 277 0 0 chr1 140222561 140222626 -56972806 + (ATG)n Simple_repeat Simple_repeat 1 65 0 2 1654 414 0 0 0 chr1 140225638 140225684 -56969748 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1654 430 309 208 40 chr1 140226512 140226863 -56968569 + L1MC3 LINE L1 7332 7741 -44 2 1654 448 322 146 41 chr1 140227155 140227636 -56967796 + L1MC4 LINE L1 6514 7065 -977 2 1654 1232 292 78 19 chr1 140228324 140228798 -56966634 + RMER5 LTR ERV1 33 534 0 2 1654 465 19 0 0 chr1 140229341 140229395 -56966037 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1654 230 306 0 16 chr1 140229459 140229522 -56965910 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1654 450 0 0 0 chr1 140231509 140231559 -56963873 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1654 264 273 55 0 chr1 140232162 140232217 -56963215 + ID SINE ID 26 83 -141 3 1654 876 147 11 11 chr1 140232352 140232531 -56962901 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 3 1654 301 228 0 17 chr1 140232899 140232957 -56962475 - B4A SINE B4 -12 280 224 3 1654 866 199 10 128 chr1 140232979 140233284 -56962148 - Lx9 LINE L1 -7 7637 7369 3 1654 286 304 13 0 chr1 140233474 140233553 -56961879 - B4A SINE B4 -162 130 51 3 1654 279 0 0 0 chr1 140233888 140233919 -56961513 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1654 304 321 28 28 chr1 140234054 140234163 -56961269 + MIR SINE MIR 19 127 -135 3 1654 1024 55 7 14 chr1 140235301 140235448 -56959984 + L1Md_F2 LINE L1 6434 6579 -3 3 1654 23 0 0 0 chr1 140235448 140235471 -56959961 + AT_rich Low_complexity Low_complexity 1 23 0 3 1654 453 307 68 146 chr1 140235690 140235896 -56959536 + B4 SINE B4 7 196 -96 3 1654 1722 33 0 0 chr1 140235896 140236109 -56959323 + L1Md_T LINE L1 5374 5586 -297 3 1654 8385 31 0 4 chr1 140236109 140237109 -56958323 + L1Md_T LINE L1 5587 6582 0 3 1654 1097 90 6 0 chr1 140237172 140237349 -56958083 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1654 2685 31 9 39 chr1 140237555 140237892 -56957540 + IAPLTR2b LTR ERVK 1 327 0 3 1654 316 284 148 7 chr1 140237892 140238023 -56957409 - MLT1J LTR MaLR -267 245 95 3 1654 712 297 29 19 chr1 140238024 140238230 -56957202 - ID_B1 SINE B4 0 224 17 3 1654 1105 277 57 33 chr1 140240085 140240421 -56955011 - MTE2b LTR MaLR -1 378 35 3 1654 282 227 0 0 chr1 140241077 140241152 -56954280 + GA-rich Low_complexity Low_complexity 4 78 0 3 1654 231 36 0 0 chr1 140241239 140241267 -56954165 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 1654 488 293 225 18 chr1 140241567 140241901 -56953531 + MER57C2 LTR ERV1 22 424 -10 3 1654 243 0 0 0 chr1 140242431 140242458 -56952974 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1654 22 0 0 0 chr1 140243535 140243557 -56951875 + AT_rich Low_complexity Low_complexity 1 22 0 3 1654 2326 199 48 29 chr1 140245506 140246028 -56949404 - RLTR40 LTR ERVK -215 602 71 3 1654 751 173 83 83 chr1 140246028 140246268 -56949164 + Lx9 LINE L1 7279 7518 -126 3 1655 769 59 10 0 chr1 140247729 140247825 -56947607 - B2_Mm2 SINE B2 -78 117 21 3 1655 2830 66 37 0 chr1 140247825 140248203 -56947229 + MTB LTR MaLR 1 392 -8 3 1655 1797 289 68 67 chr1 140248777 140250550 -56944882 + L1_Mur3 LINE L1 3510 5263 -614 3 1655 195 42 0 0 chr1 140250550 140250574 -56944858 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1655 1226 302 90 92 chr1 140250574 140251074 -56944358 + L1_Mur3 LINE L1 5264 5778 -99 3 1655 1980 193 63 2 chr1 140251344 140251739 -56943693 + MTD LTR MaLR 1 419 0 3 1655 237 108 0 0 chr1 140253402 140253439 -56941993 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1655 315 65 0 0 chr1 140253439 140253485 -56941947 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1655 1082 221 170 4 chr1 140253733 140253992 -56941440 - MTD LTR MaLR -14 405 104 3 1655 1192 143 81 33 chr1 140253993 140254203 -56941229 + URR1A DNA MER1_type 2 221 -5 3 1655 529 254 0 9 chr1 140254205 140254320 -56941112 - MTD LTR MaLR -305 114 1 3 1655 338 123 30 15 chr1 140254500 140254566 -56940866 - RMER5 LTR ERV1 -424 110 44 3 1655 259 275 126 38 chr1 140255012 140255171 -56940261 + MLT1J-int LTR MaLR 1160 1332 -55 3 1655 1049 272 42 99 chr1 140255324 140255708 -56939724 - MTE2a LTR MaLR -3 376 15 3 1655 9196 82 16 11 chr1 140256252 140258290 -56937142 + L1VL2 LINE L1 284 2335 -1280 3 1655 354 123 0 0 chr1 140258605 140258662 -56936770 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 3 1655 958 189 17 6 chr1 140260920 140261101 -56934331 + URR1A DNA MER1_type 1 183 -43 3 1655 225 303 97 39 chr1 140261094 140261197 -56934235 - LTR79 LTR ERVL -341 186 78 3 1655 282 160 0 0 chr1 140261428 140261478 -56933954 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1655 1076 276 53 8 chr1 140261525 140261886 -56933546 + MTE2a LTR MaLR 1 377 -2 3 1655 252 0 0 0 chr1 140262613 140262641 -56932791 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1655 326 200 0 0 chr1 140263509 140263564 -56931868 + B1_Mur4 SINE Alu 85 139 -11 3 1655 233 57 0 28 chr1 140263580 140263616 -56931816 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1655 696 319 60 30 chr1 140263977 140264342 -56931090 + Lx8 LINE L1 7092 7467 -6 3 1655 329 345 51 65 chr1 140264808 140264948 -56930484 + B4 SINE B4 82 214 -10 3 1655 880 167 21 0 chr1 140267531 140267675 -56927757 + B1_Mus2 SINE Alu 1 147 0 3 1655 227 355 54 39 chr1 140267817 140267946 -56927486 - L3 LINE CR1 -987 3502 3372 3 1655 23 0 0 0 chr1 140268033 140268056 -56927376 + AT_rich Low_complexity Low_complexity 1 23 0 3 1655 192 77 0 0 chr1 140268071 140268097 -56927335 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 1655 360 43 0 0 chr1 140269797 140269843 -56925589 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1655 448 276 72 52 chr1 140269864 140270017 -56925415 - B3A SINE B2 -41 157 2 3 1655 104 61 0 0 chr1 140271384 140271565 -56923867 + AT_rich Low_complexity Low_complexity 1 181 0 3 1655 330 194 0 0 chr1 140271633 140271700 -56923732 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1655 425 211 22 0 chr1 140271703 140271793 -56923639 - B3 SINE B2 -121 95 4 3 1655 413 192 152 9 chr1 140271801 140271906 -56923526 + MTD LTR MaLR 6 125 -294 3 1655 240 35 0 0 chr1 140272211 140272240 -56923192 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1655 834 251 60 4 chr1 140273556 140273824 -56921608 + RMER1B Other Other 536 818 -248 3 1655 310 279 0 0 chr1 140274027 140274125 -56921307 + RMER1B Other Other 268 348 -718 3 1655 2665 247 110 55 chr1 140274176 140274943 -56920489 + RMER1C Other Other 419 1196 -146 3 1655 417 20 0 0 chr1 140274943 140274993 -56920439 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 1655 2665 247 110 55 chr1 140274993 140275098 -56920334 + RMER1C Other Other 1197 1338 -4 3 1655 399 41 0 0 chr1 140275793 140275842 -56919590 + (TAA)n Simple_repeat Simple_repeat 2 50 0 3 1655 405 0 0 0 chr1 140276519 140276564 -56918868 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1655 333 0 0 0 chr1 140276893 140276930 -56918502 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1655 486 0 0 0 chr1 140276930 140276983 -56918449 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1655 479 352 77 68 chr1 140279381 140279542 -56915890 - MLT1H LTR MaLR -6 543 383 3 1655 2764 89 83 9 chr1 140279542 140279961 -56915471 - L1_Mus4 LINE L1 0 6636 6187 3 1655 479 352 77 68 chr1 140279961 140280256 -56915176 - MLT1H LTR MaLR -167 382 84 3 1655 248 347 10 40 chr1 140281111 140281210 -56914222 - RMER12 LTR ERVK -493 829 734 3 1655 249 33 0 0 chr1 140282402 140282432 -56913000 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1655 183 333 107 41 chr1 140284054 140284251 -56911181 + L3 LINE CR1 3384 3593 -896 3 1655 237 33 0 0 chr1 140287319 140287349 -56908083 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1655 405 0 0 0 chr1 140287385 140287430 -56908002 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1655 23 33 0 0 chr1 140288092 140288122 -56907310 + AT_rich Low_complexity Low_complexity 1 30 0 3 1655 181 289 19 0 chr1 140288730 140288782 -56906650 + L2a LINE L2 3027 3079 -347 3 1655 253 221 38 25 chr1 140290832 140290911 -56904521 - Lx8 LINE L1 -644 6829 6750 3 1655 459 305 34 0 chr1 140291188 140291306 -56904126 + RSINE1 SINE B4 2 123 -42 3 1655 21 36 0 0 chr1 140291342 140291370 -56904062 + AT_rich Low_complexity Low_complexity 1 28 0 3 1655 22 0 0 0 chr1 140292459 140292481 -56902951 + AT_rich Low_complexity Low_complexity 1 22 0 3 1655 777 136 21 28 chr1 140293399 140293543 -56901889 - URR1B DNA MER1_type 0 225 83 3 1655 428 349 54 49 chr1 140293599 140293804 -56901628 + MLT1E1A LTR MaLR 360 565 -115 3 1655 1915 153 12 12 chr1 140294660 140294984 -56900448 + ORR1A4 LTR MaLR 4 327 -2 3 1655 32 43 0 0 chr1 140295149 140295195 -56900237 + AT_rich Low_complexity Low_complexity 1 46 0 3 1655 821 267 32 4 chr1 140295881 140296159 -56899273 + L1MA5 LINE L1 6004 6289 -11 3 1655 821 267 32 4 chr1 140296551 140296829 -56898603 + L1MA5 LINE L1 6004 6289 -11 3 1655 283 289 103 79 chr1 140297914 140298079 -56897353 - MLT1H LTR MaLR -307 242 74 3 1655 666 25 0 0 chr1 140298127 140298207 -56897225 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1655 366 284 69 0 chr1 140298212 140298314 -56897118 - PB1D10 SINE Alu -7 110 2 3 1655 266 258 0 0 chr1 140298261 140298323 -56897109 - B4A SINE B4 -153 139 78 3 1655 598 64 10 60 chr1 140298741 140298841 -56896591 + L1_Mus2 LINE L1 6470 6564 -2 3 1655 473 149 9 0 chr1 140299184 140299298 -56896134 + (CATA)n Simple_repeat Simple_repeat 2 116 0 3 1655 241 200 71 16 chr1 140299312 140299439 -56895993 + (TA)n Simple_repeat Simple_repeat 2 135 0 3 1655 5181 224 60 35 chr1 140299512 140300869 -56894563 - Lx7 LINE L1 -194 7502 6111 3 1655 3084 179 96 18 chr1 140301323 140301979 -56893453 + Lx5 LINE L1 6339 7045 -5 3 1655 32 26 0 0 chr1 140303736 140303775 -56891657 + AT_rich Low_complexity Low_complexity 1 39 0 3 1655 841 309 45 49 chr1 140304256 140304284 -56891148 - B4A SINE B4 -7 285 258 3 1655 405 58 0 0 chr1 140304284 140304336 -56891096 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1655 841 309 45 49 chr1 140304336 140304593 -56890839 - B4A SINE B4 -35 257 2 3 1655 562 289 96 73 chr1 140304974 140305288 -56890144 - ORR1E LTR MaLR -38 321 1 3 1655 302 287 28 135 chr1 140307007 140307148 -56888284 + Tigger14a DNA MER2_type 15 140 -184 3 1655 450 0 0 0 chr1 140307194 140307244 -56888188 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1655 558 155 0 0 chr1 140307257 140307354 -56888078 + CT-rich Low_complexity Low_complexity 3 99 0 3 1655 483 18 0 0 chr1 140307356 140307412 -56888020 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1655 2033 218 82 22 chr1 140308543 140308636 -56886796 - RLTR20A LTR ERVK 0 541 438 4 1655 378 0 0 0 chr1 140308636 140308678 -56886754 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1655 2033 218 82 22 chr1 140308678 140309094 -56886338 - RLTR20A LTR ERVK -104 437 2 4 1655 495 126 0 0 chr1 140309852 140309947 -56885485 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1655 680 257 7 7 chr1 140309956 140310105 -56885327 - B3A SINE B2 -48 150 2 4 1655 686 285 70 5 chr1 140311024 140311225 -56884207 + B4A SINE B4 1 214 -78 4 1655 291 278 0 0 chr1 140311369 140311484 -56883948 + (CA)n Simple_repeat Simple_repeat 1 115 0 4 1655 307 268 80 16 chr1 140312063 140312188 -56883244 + B1F SINE Alu 2 134 -15 4 1655 182 191 0 21 chr1 140312794 140312842 -56882590 + GA-rich Low_complexity Low_complexity 4 50 0 4 1655 232 167 0 0 chr1 140313507 140313555 -56881877 + T-rich Low_complexity Low_complexity 1 48 0 4 1655 22 35 0 0 chr1 140314418 140314447 -56880985 + AT_rich Low_complexity Low_complexity 1 29 0 4 1655 565 351 13 39 chr1 140315368 140315599 -56879833 + B4A SINE B4 2 226 -66 4 1655 219 360 11 0 chr1 140315599 140315688 -56879744 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1655 211 176 0 0 chr1 140316008 140316042 -56879390 + polypurine Low_complexity Low_complexity 3 36 0 4 1655 193 57 57 0 chr1 140316042 140316077 -56879355 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 4 1655 456 192 0 0 chr1 140316937 140317041 -56878391 + (TG)n Simple_repeat Simple_repeat 2 105 0 4 1655 396 320 15 23 chr1 140317046 140317177 -56878255 - B4 SINE B4 -2 290 161 4 1655 298 234 0 105 chr1 140317307 140317393 -56878039 - B4 SINE B4 -214 78 2 4 1655 462 372 92 9 chr1 140317605 140317833 -56877599 - MIR SINE MIR -1 261 15 4 1655 309 288 8 85 chr1 140318407 140318536 -56876896 + MER103 DNA DNA 45 163 -3 4 1655 548 184 6 175 chr1 140318832 140319003 -56876429 + B1_Mur1 SINE Alu 1 142 -7 4 1655 1364 236 18 35 chr1 140319412 140319435 -56875997 + MTD LTR MaLR 2 19 -400 4 1655 558 0 0 0 chr1 140319435 140319497 -56875935 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 4 1655 1364 236 18 35 chr1 140319497 140319811 -56875621 + MTD LTR MaLR 20 332 -87 4 1655 219 69 0 0 chr1 140320908 140320937 -56874495 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 4 1655 259 254 28 0 chr1 140322157 140322228 -56873204 + GA-rich Low_complexity Low_complexity 2 74 0 4 1655 22 0 0 0 chr1 140322653 140322675 -56872757 + AT_rich Low_complexity Low_complexity 1 22 0 4 1655 453 272 0 50 chr1 140322736 140322856 -56872576 + B1F SINE Alu 31 144 -5 4 1655 674 303 35 15 chr1 140322872 140323070 -56872362 - LTR41 LTR ERVL -127 641 440 4 1655 387 92 0 0 chr1 140323296 140323361 -56872071 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 4 1655 385 389 74 0 chr1 140324365 140324514 -56870918 + RSINE1 SINE B4 2 161 -4 4 1655 276 100 0 0 chr1 140324516 140324556 -56870876 + (TAG)n Simple_repeat Simple_repeat 3 42 0 4 1655 907 97 7 7 chr1 140325169 140325315 -56870117 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 4 1655 249 33 0 0 chr1 140325359 140325389 -56870043 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 4 1655 590 42 0 0 chr1 140325672 140325744 -56869688 + L1Md_F2 LINE L1 5514 5585 -298 4 1655 8460 33 1 0 chr1 140325745 140326738 -56868694 + L1Md_F2 LINE L1 5587 6580 -2 4 1655 243 0 0 0 chr1 140327179 140327206 -56868226 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1655 378 400 7 0 chr1 140327280 140327425 -56868007 - RSINE1 SINE B4 -19 146 1 4 1655 342 289 55 0 chr1 140328255 140328383 -56867049 + MLT1A0 LTR MaLR 11 145 -220 4 1655 321 231 67 57 chr1 140328423 140328566 -56866866 + MLT1A0 LTR MaLR 254 401 -7 4 1655 333 0 0 0 chr1 140328659 140328696 -56866736 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1655 512 277 78 0 chr1 140328696 140328837 -56866595 - RSINE1 SINE B4 -9 156 5 4 1655 238 246 16 0 chr1 140328982 140329043 -56866389 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1655 524 387 40 11 chr1 140329336 140329613 -56865819 + Arthur1B DNA Tip100 248 532 -693 4 1655 447 52 0 0 chr1 140331245 140331303 -56864129 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1655 288 319 0 0 chr1 140331306 140331378 -56864054 - MLT2B1 LTR ERVL -77 490 419 4 1655 574 364 62 4 chr1 140331407 140331650 -56863782 - MLT2B1 LTR ERVL -263 257 1 4 1655 356 330 45 0 chr1 140331990 140332102 -56863330 + MTEa LTR MaLR 4 120 -259 4 1655 845 304 12 64 chr1 140332126 140332471 -56862961 + MT2A LTR ERVL 205 531 -2 4 1655 2040 238 77 53 chr1 140333251 140333993 -56861439 - RLTR40 LTR ERVK -39 778 19 4 1655 492 18 0 0 chr1 140335831 140335888 -56859544 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1655 260 293 7 14 chr1 140336482 140336509 -56858923 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1655 459 87 0 0 chr1 140336509 140336578 -56858854 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1655 260 293 7 14 chr1 140336578 140336692 -56858740 + (TTTA)n Simple_repeat Simple_repeat 2 114 0 4 1655 687 234 21 0 chr1 140336692 140336837 -56858595 - B1_Mus1 SINE Alu 0 148 1 4 1655 6143 222 83 23 chr1 140336837 140338383 -56857049 - Lx6 LINE L1 -19 7441 5803 4 1655 2952 173 3 72 chr1 140338375 140338886 -56856546 - Lx6 LINE L1 -285 5595 5114 4 1655 939 164 0 0 chr1 140338886 140339026 -56856406 - B1_Mur4 SINE Alu -8 142 3 4 1655 2952 173 3 72 chr1 140339026 140339169 -56856263 - Lx6 LINE L1 -767 5113 4986 4 1655 831 299 42 0 chr1 140339323 140339564 -56855868 - B4A SINE B4 -40 252 2 4 1655 396 0 0 0 chr1 140339792 140339836 -56855596 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1655 365 16 31 31 chr1 140339836 140339900 -56855532 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1655 610 311 25 12 chr1 140339943 140340106 -56855326 - ID_B1 SINE B4 0 224 60 4 1655 217 315 149 14 chr1 140340696 140340844 -56854588 - MIRb SINE MIR -4 264 97 4 1655 2020 161 105 38 chr1 140340916 140341406 -56854026 + RMER4B LTR ERVK 17 466 0 4 1655 293 185 0 15 chr1 140342037 140342103 -56853329 + CT-rich Low_complexity Low_complexity 2 66 0 4 1655 609 253 68 40 chr1 140342764 140342941 -56852491 + B3A SINE B2 1 182 -16 4 1655 404 297 153 53 chr1 140343038 140343358 -56852074 + MLT1D LTR MaLR 28 379 -126 4 1655 240 35 0 0 chr1 140345035 140345064 -56850368 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1655 407 237 2 5 chr1 140346574 140346673 -56848759 - ID4 SINE ID -53 99 2 4 1655 2180 138 56 6 chr1 140347178 140347520 -56847912 + ORR1B2 LTR MaLR 1 359 -8 4 1655 581 287 37 0 chr1 140347670 140347806 -56847626 - RSINE1 SINE B4 -23 142 2 4 1655 34582 45 0 16 chr1 140348581 140353761 -56841671 + L1Md_A LINE L1 490 5586 -297 4 1655 8480 31 1 0 chr1 140353761 140354756 -56840676 + L1Md_A LINE L1 5587 6582 0 4 1655 3043 86 40 9 chr1 140355459 140355903 -56839529 - L1_Mus4 LINE L1 -2 6634 6177 4 1655 197 278 95 77 chr1 140356222 140356390 -56839042 - L2a LINE L2 -260 3166 2996 4 1655 224 231 19 0 chr1 140357800 140357852 -56837580 + GA-rich Low_complexity Low_complexity 2 54 0 4 1655 414 286 101 19 chr1 140358089 140358346 -56837086 - L1MA4 LINE L1 -337 6665 6388 4 1655 391 275 40 27 chr1 140358565 140358936 -56836496 - L1MA4 LINE L1 -832 6170 5786 4 1655 941 189 0 0 chr1 140358945 140359114 -56836318 - Lx4B LINE L1 -415 6643 6475 4 1655 811 231 62 31 chr1 140359113 140359401 -56836031 + Lx3C LINE L1 6647 7054 -4 4 1655 1405 293 105 36 chr1 140359479 140360082 -56835350 - L1MA4 LINE L1 -1123 5722 5052 4 1655 1586 108 4 9 chr1 140360082 140360307 -56835125 + URR1A DNA MER1_type 3 226 0 4 1655 1405 293 105 36 chr1 140360307 140360759 -56834673 - L1MA4 LINE L1 -1794 5051 4594 4 1655 180 200 0 0 chr1 140360853 140360903 -56834529 + CT-rich Low_complexity Low_complexity 3 52 0 4 1655 324 333 52 7 chr1 140360955 140361091 -56834341 - L1MA4 LINE L1 -2458 4387 4246 4 1655 387 250 112 16 chr1 140361173 140361494 -56833938 - L1MA4 LINE L1 -2703 4142 3791 4 1655 449 295 263 0 chr1 140362019 140362193 -56833239 - ID_B1 SINE B4 -3 221 2 4 1655 406 327 50 21 chr1 140362197 140362575 -56832857 - L1MA4 LINE L1 -3959 2890 2502 4 1655 234 0 0 0 chr1 140362646 140362672 -56832760 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1655 452 324 50 29 chr1 140363928 140364068 -56831364 + RSINE1 SINE B4 2 144 -21 4 1655 310 352 70 27 chr1 140364151 140364338 -56831094 + L1MC4 LINE L1 6836 7030 -1012 4 1655 413 226 176 68 chr1 140364343 140364519 -56830913 + B3A SINE B2 3 197 -1 4 1655 978 270 137 17 chr1 140364533 140365075 -56830357 + L1MC4 LINE L1 7079 7668 -214 4 1655 231 244 42 20 chr1 140366351 140366468 -56828964 + L1M2 LINE L1 5374 5493 -810 4 1655 344 322 70 45 chr1 140366933 140367326 -56828106 - L1M2 LINE L1 -676 5498 5095 4 1655 498 288 53 50 chr1 140367352 140367652 -56827780 - L1M2 LINE L1 -1121 5022 4722 4 1655 700 213 104 26 chr1 140367673 140367866 -56827566 - B3 SINE B2 -8 208 1 4 1655 706 185 32 6 chr1 140367902 140368060 -56827372 - Lx2A1 LINE L1 -4 7004 6843 4 1655 284 73 0 141 chr1 140368063 140368127 -56827305 + Lx2A1 LINE L1 6094 6148 -860 4 1655 753 265 59 137 chr1 140368312 140368684 -56826748 + MTE2a LTR MaLR 2 344 -35 4 1655 221 54 81 0 chr1 140368695 140368732 -56826700 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 4 1655 591 323 169 40 chr1 140368772 140369209 -56826223 - L1M2 LINE L1 -1627 4516 4003 4 1655 3275 53 0 5 chr1 140369209 140369624 -56825808 + L1Md_F2 LINE L1 6170 6582 0 4 1655 591 323 169 40 chr1 140369624 140369909 -56825523 - L1M2 LINE L1 -2141 4002 3701 4 1655 416 267 105 15 chr1 140369933 140370066 -56825366 + RMER30 DNA MER1_type 3 147 -55 4 1655 587 304 101 60 chr1 140370094 140370510 -56824922 - L1M2 LINE L1 -2439 3704 3272 4 1655 672 169 89 20 chr1 140370911 140371114 -56824318 - Lx3C LINE L1 -1 6999 6779 4 1655 617 271 70 22 chr1 140371472 140371657 -56823775 - B3A SINE B2 0 198 5 4 1655 643 264 44 73 chr1 140371763 140371967 -56823465 + B3A SINE B2 1 198 0 4 1655 261 258 22 0 chr1 140371972 140372061 -56823371 - L1M2 LINE L1 -828 6174 6084 4 1655 316 280 74 40 chr1 140372087 140372262 -56823170 - L1M2 LINE L1 -791 6054 5874 4 1655 342 0 0 0 chr1 140372385 140372423 -56823009 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1655 262 261 10 107 chr1 140372443 140372546 -56822886 + RMER15 LTR ERVL 1 93 -482 4 1655 615 151 9 9 chr1 140372588 140372695 -56822737 + RMER15 LTR ERVL 27 133 -442 4 1655 578 190 176 16 chr1 140372695 140372882 -56822550 - Lx9 LINE L1 -536 7108 6892 4 1655 1160 240 150 34 chr1 140372873 140373373 -56822059 - Lx9 LINE L1 -967 6677 6120 4 1655 315 0 0 0 chr1 140373375 140373410 -56822022 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1655 1851 214 42 71 chr1 140373410 140374070 -56821362 - L1_Rod LINE L1 -1122 4725 4085 4 1655 413 130 13 0 chr1 140374073 140374150 -56821282 + L1_Mm LINE L1 5241 5318 -565 4 1655 304 322 127 19 chr1 140374158 140374182 -56821250 - L1M2 LINE L1 -2522 4323 4300 4 1655 405 0 0 0 chr1 140374182 140374227 -56821205 + (TAA)n Simple_repeat Simple_repeat 3 47 0 4 1655 304 322 127 19 chr1 140374227 140374563 -56820869 - L1M2 LINE L1 -2546 4299 3925 4 1655 221 245 20 0 chr1 140374886 140374935 -56820497 + CT-rich Low_complexity Low_complexity 3 52 0 5 1655 418 239 92 105 chr1 140374947 140375242 -56820190 - B4A SINE B4 0 292 2 5 1655 231 285 76 7 chr1 140375388 140375533 -56819899 - L1M4 LINE L1 -3195 2951 2797 5 1655 430 289 136 46 chr1 140375562 140376062 -56819370 - L1M2 LINE L1 -3456 3389 2845 4 1655 201 250 0 0 chr1 140376079 140376139 -56819293 + (CAT)n Simple_repeat Simple_repeat 3 62 0 5 1655 227 377 0 0 chr1 140376148 140376209 -56819223 - ID2 SINE ID -9 74 14 5 1655 1042 239 128 112 chr1 140376252 140376680 -56818752 + RMER19C LTR ERVK 177 611 0 5 1655 437 303 118 24 chr1 140376725 140377141 -56818291 - L1M2 LINE L1 -4046 2803 2349 4 1655 981 246 104 22 chr1 140377321 140377599 -56817833 - ORR1E LTR MaLR -57 302 2 5 1656 2094 188 21 8 chr1 140378153 140378534 -56816898 + ORR1B1 LTR MaLR 1 386 -8 5 1656 25 0 0 0 chr1 140380702 140380727 -56814705 + AT_rich Low_complexity Low_complexity 1 25 0 5 1656 1126 88 0 0 chr1 140381563 140381710 -56813722 - B1_Mus1 SINE Alu 0 148 2 5 1656 215 56 56 0 chr1 140381897 140381933 -56813499 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1656 228 349 107 12 chr1 140385719 140385803 -56809629 + L4 LINE RTE 1121 1212 -817 5 1656 1019 202 163 8 chr1 140385865 140386104 -56809328 - MTC LTR MaLR -6 415 140 5 1656 1772 168 56 48 chr1 140386104 140386518 -56808914 + Lx4A LINE L1 6601 7017 -41 5 1656 549 0 0 0 chr1 140386567 140386628 -56808804 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1656 396 0 0 0 chr1 140386628 140386671 -56808761 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1656 317 214 0 54 chr1 140386671 140386745 -56808687 - MTC LTR MaLR -345 76 7 5 1656 365 295 62 2 chr1 140387288 140387403 -56808029 - PB1D9 SINE Alu -16 133 14 5 1656 405 0 0 0 chr1 140388643 140388688 -56806744 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1656 749 179 0 32 chr1 140390240 140390425 -56805007 + GA-rich Low_complexity Low_complexity 2 180 0 5 1656 922 156 0 22 chr1 140390438 140390622 -56804810 + GA-rich Low_complexity Low_complexity 1 180 0 5 1656 651 88 0 0 chr1 140390623 140390714 -56804718 + (GAAAA)n Simple_repeat Simple_repeat 1 91 0 5 1656 274 331 27 33 chr1 140391098 140391248 -56804184 + B1F1 SINE Alu 1 149 0 5 1656 238 207 86 0 chr1 140391250 140391308 -56804124 + ID4_ SINE ID 2 64 -19 5 1656 21 0 0 0 chr1 140395429 140395450 -56799982 + AT_rich Low_complexity Low_complexity 1 21 0 5 1656 195 129 0 0 chr1 140397244 140397275 -56798157 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1656 24 67 0 0 chr1 140399431 140399476 -56795956 + AT_rich Low_complexity Low_complexity 1 45 0 5 1656 192 149 0 0 chr1 140401920 140401967 -56793465 + (T)n Simple_repeat Simple_repeat 1 47 0 5 1656 396 97 0 0 chr1 140402803 140402865 -56792567 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1656 595 291 20 13 chr1 140402868 140403018 -56792414 - RSINE1 SINE B4 -12 153 3 5 1656 208 0 62 0 chr1 140405096 140405128 -56790304 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1656 404 348 104 17 chr1 140405339 140405663 -56789769 + MLT1E3 LTR MaLR 291 616 -8 5 1656 796 36 0 18 chr1 140405846 140405960 -56789472 + (GTTTG)n Simple_repeat Simple_repeat 2 113 0 5 1656 477 0 0 0 chr1 140406596 140406649 -56788783 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1656 353 327 63 13 chr1 140407295 140407453 -56787979 + MER112 DNA MER1_type 4 169 -92 5 1656 418 245 72 33 chr1 140408315 140408467 -56786965 + RCHARR1 DNA MER1_type 51 208 -766 5 1656 700 269 25 0 chr1 140409569 140409770 -56785662 - ID_B1 SINE B4 -18 206 1 5 1656 180 152 0 0 chr1 140410130 140410163 -56785269 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1656 28 0 0 0 chr1 140413216 140413244 -56782188 + AT_rich Low_complexity Low_complexity 1 28 0 5 1656 485 280 64 39 chr1 140413573 140413729 -56781703 + ID_B1 SINE B4 5 164 -60 5 1656 356 300 27 0 chr1 140413711 140413821 -56781611 + ID_B1 SINE B4 105 217 -7 5 1656 307 188 17 67 chr1 140415205 140415325 -56780107 - Lx9 LINE L1 -13 7631 7518 5 1656 248 306 71 18 chr1 140417094 140417207 -56778225 + MIR3 SINE MIR 69 187 -21 5 1656 23 33 0 0 chr1 140417649 140417679 -56777753 + AT_rich Low_complexity Low_complexity 1 30 0 5 1656 22 56 0 0 chr1 140418013 140418049 -56777383 + AT_rich Low_complexity Low_complexity 1 36 0 5 1656 345 319 10 21 chr1 140418201 140418297 -56777135 + ID_B1 SINE B4 81 175 -49 5 1656 310 354 0 94 chr1 140418202 140418330 -56777102 + PB1D10 SINE Alu 1 116 -1 5 1656 248 294 141 0 chr1 140419077 140419162 -56776270 + PB1D10 SINE Alu 6 102 -15 5 1656 385 279 71 52 chr1 140419171 140419383 -56776049 + Lx8 LINE L1 7256 7471 -2 5 1656 610 337 117 24 chr1 140419426 140419724 -56775708 + MLT1E1 LTR MaLR 107 432 -222 5 1656 545 242 57 0 chr1 140422158 140422282 -56773150 + ID_B1 SINE B4 84 214 -10 5 1656 234 325 39 32 chr1 140422511 140422667 -56772765 + L2a LINE L2 3146 3302 -124 5 1656 12533 27 1 0 chr1 140422682 140424237 -56771195 - Lx6 LINE L1 -1781 5679 4122 5 1656 8537 8 0 6 chr1 140424237 140425196 -56770236 + L1Md_T LINE L1 5630 6582 0 5 1656 333 0 0 0 chr1 140425577 140425614 -56769818 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1656 189 287 126 11 chr1 140425622 140425717 -56769715 - MIR SINE MIR -77 185 80 5 1656 331 346 25 37 chr1 140427990 140428152 -56767280 + MER89 LTR ERV1 349 508 -51 5 1656 239 0 32 0 chr1 140428167 140428198 -56767234 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 5 1656 291 252 149 0 chr1 140428215 140428322 -56767110 + MLT1J LTR MaLR 45 167 -345 5 1656 669 269 157 12 chr1 140428690 140428938 -56766494 - B4A SINE B4 -6 286 3 5 1656 443 18 0 0 chr1 140429041 140429097 -56766335 + B1_Mus1 SINE Alu 1 56 -92 5 1656 486 0 0 0 chr1 140429120 140429174 -56766258 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1656 203 269 9 0 chr1 140430147 140430255 -56765177 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1656 369 164 0 0 chr1 140431100 140431173 -56764259 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1656 303 273 145 56 chr1 140432088 140432391 -56763041 + L1MA5 LINE L1 5966 6295 -5 5 1656 318 262 19 10 chr1 140433845 140433949 -56761483 + (TA)n Simple_repeat Simple_repeat 1 105 0 5 1656 720 186 27 41 chr1 140434645 140434791 -56760641 - B1_Mur4 SINE Alu -6 144 1 5 1656 909 181 22 0 chr1 140435714 140435896 -56759536 + B2_Mm2 SINE B2 1 186 -9 5 1656 3351 60 0 0 chr1 140437181 140437595 -56757837 - L1_Mus1 LINE L1 0 6567 6154 5 1656 270 203 62 15 chr1 140438900 140438965 -56756467 - PB1D7 SINE Alu -21 99 32 5 1656 245 266 25 25 chr1 140439348 140439429 -56756003 - ID4 SINE ID -1 82 2 5 1656 2742 110 8 53 chr1 140440048 140440519 -56754913 + RLTR11B LTR ERVK 1 450 -3 5 1656 495 0 0 0 chr1 140441159 140441214 -56754218 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1656 619 191 129 8 chr1 140441235 140441367 -56754065 + B1_Mus1 SINE Alu 1 148 0 5 1656 201 94 0 0 chr1 140441666 140441698 -56753734 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 1656 22 35 0 0 chr1 140441755 140441784 -56753648 + AT_rich Low_complexity Low_complexity 1 29 0 5 1656 263 276 13 13 chr1 140442039 140442116 -56753316 - Lx8 LINE L1 -221 7252 7176 5 1656 291 28 0 0 chr1 140442317 140442353 -56753079 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1656 569 273 45 7 chr1 140443109 140443264 -56752168 + RSINE1 SINE B4 2 162 -3 5 1656 42 48 0 0 chr1 140443265 140443328 -56752104 + AT_rich Low_complexity Low_complexity 1 63 0 5 1656 221 259 0 18 chr1 140444123 140444178 -56751254 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1656 295 41 41 0 chr1 140445552 140445601 -56749831 + (CAA)n Simple_repeat Simple_repeat 2 52 0 5 1656 1124 136 181 10 chr1 140445695 140445888 -56749544 + URR1A DNA MER1_type 1 226 0 5 1656 692 240 129 46 chr1 140446419 140446760 -56748672 + MTE2a LTR MaLR 8 379 0 5 1656 1542 173 6 102 chr1 140446939 140447274 -56748158 - RLTR26 LTR ERVK 0 642 340 5 1656 401 143 57 0 chr1 140447271 140447341 -56748091 - RLTR26 LTR ERVK -568 74 1 5 1656 25 31 0 0 chr1 140448026 140448058 -56747374 + AT_rich Low_complexity Low_complexity 1 32 0 5 1656 411 119 0 0 chr1 140448076 140448143 -56747289 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1656 278 335 0 0 chr1 140449683 140449785 -56745647 + BC1_Mm scRNA scRNA 1 102 -50 5 1656 4484 99 11 6 chr1 140449843 140450472 -56744960 + L1_Mus3 LINE L1 6005 6636 -2 5 1656 408 228 54 47 chr1 140450942 140451071 -56744361 + ID_B1 SINE B4 93 222 -2 5 1656 888 250 73 0 chr1 140451093 140451285 -56744147 - B3 SINE B2 -9 207 2 5 1656 213 39 0 0 chr1 140451411 140451437 -56743995 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 5 1656 473 232 35 9 chr1 140452528 140452658 -56742774 + B1F SINE Alu 21 137 -12 5 1656 311 292 0 0 chr1 140452666 140452738 -56742694 + ID4_ SINE ID 2 73 -10 5 1656 417 39 0 0 chr1 140453634 140453685 -56741747 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1656 500 308 196 17 chr1 140453738 140454370 -56741062 - L2 LINE L2 -630 2789 2045 5 1656 237 65 0 0 chr1 140455819 140455850 -56739582 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1656 249 33 0 0 chr1 140456617 140456647 -56738785 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1656 246 32 0 0 chr1 140457910 140457941 -56737491 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1656 581 221 107 0 chr1 140459604 140459726 -56735706 - B1_Mm SINE Alu -12 135 1 5 1656 597 220 0 9 chr1 140459746 140459856 -56735576 + PB1D7 SINE Alu 4 112 -8 5 1656 22 35 0 0 chr1 140459925 140459954 -56735478 + AT_rich Low_complexity Low_complexity 1 29 0 5 1656 928 178 7 14 chr1 140459986 140460134 -56735298 + B1_Mur4 SINE Alu 4 150 0 6 1656 235 145 29 0 chr1 140460144 140460213 -56735219 + A-rich Low_complexity Low_complexity 2 72 0 6 1656 381 256 44 58 chr1 140460432 140460569 -56734863 - L1M5 LINE L1 -1991 4155 4021 6 1656 1017 214 71 10 chr1 140460574 140460772 -56734660 - B3 SINE B2 -5 211 2 6 1656 278 350 0 0 chr1 140461633 140461713 -56733719 - B4A SINE B4 -209 83 4 6 1656 390 257 90 18 chr1 140462231 140462342 -56733090 + PB1D9 SINE Alu 1 119 -1 6 1656 180 298 53 0 chr1 140462377 140462434 -56732998 - L2 LINE L2 -668 2751 2692 6 1656 934 270 126 78 chr1 140462573 140463303 -56732129 - Charlie1a DNA MER1_type -72 1383 619 6 1656 823 206 0 14 chr1 140463303 140463451 -56731981 + B1_Mus2 SINE Alu 1 146 -1 6 1656 402 147 0 0 chr1 140463451 140463519 -56731913 + (TAA)n Simple_repeat Simple_repeat 1 68 0 6 1656 293 354 115 43 chr1 140463520 140463842 -56731590 - Charlie1a DNA MER1_type -828 627 283 6 1656 1625 175 101 34 chr1 140463861 140464275 -56731157 + RMER10A LTR ERVL 1 442 0 6 1656 230 269 0 19 chr1 140464297 140464350 -56731082 - ID2 SINE ID -30 53 2 6 1656 544 313 74 53 chr1 140464603 140464886 -56730546 + B4A SINE B4 4 292 0 6 1656 279 215 0 0 chr1 140464891 140464956 -56730476 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1656 348 359 71 18 chr1 140466029 140466253 -56729179 + RMER5 LTR ERV1 233 468 -66 6 1656 1314 126 118 31 chr1 140466968 140467223 -56728209 - Lx4B LINE L1 -5 7053 6777 6 1656 189 147 0 0 chr1 140467702 140467736 -56727696 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1656 715 263 142 38 chr1 140468109 140468453 -56726979 + L1MC4 LINE L1 6779 7158 -884 6 1656 22 0 0 0 chr1 140469200 140469222 -56726210 + AT_rich Low_complexity Low_complexity 1 22 0 6 1656 621 250 8 0 chr1 140469384 140469508 -56725924 + RSINE1 SINE B4 2 126 -39 6 1656 338 0 24 0 chr1 140469512 140469554 -56725878 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1656 28 0 0 0 chr1 140469686 140469714 -56725718 + AT_rich Low_complexity Low_complexity 1 28 0 6 1656 922 209 159 48 chr1 140470624 140470967 -56724465 - MTD LTR MaLR -18 401 3 6 1656 402 319 101 21 chr1 140471361 140471550 -56723882 - L1ME1 LINE L1 -348 5831 5628 6 1656 260 257 249 85 chr1 140474790 140474991 -56720441 - B4 SINE B4 -39 253 20 6 1656 1432 81 22 0 chr1 140475382 140475567 -56719865 + B2_Mm2 SINE B2 1 189 -6 6 1656 1059 142 0 0 chr1 140475567 140475743 -56719689 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 1656 358 303 64 9 chr1 140476787 140476897 -56718535 - MER58B DNA MER1_type 0 341 226 6 1656 231 264 0 0 chr1 140477543 140477596 -56717836 + L1MEg1 LINE L1 685 737 -5498 6 1656 243 0 0 0 chr1 140477596 140477623 -56717809 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1656 982 196 152 61 chr1 140477746 140478056 -56717376 + Lx9 LINE L1 7285 7622 -22 6 1656 492 32 0 0 chr1 140478191 140478253 -56717179 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1656 376 305 140 22 chr1 140478473 140478701 -56716731 + L1MEg1 LINE L1 3378 3632 -3605 6 1656 673 353 91 14 chr1 140478844 140479131 -56716301 + LTR16A LTR ERVL 138 446 -5 6 1656 880 292 52 68 chr1 140479286 140479653 -56715779 + MTE2a LTR MaLR 19 379 0 6 1656 191 88 29 0 chr1 140479818 140479852 -56715580 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1656 1388 228 91 14 chr1 140479995 140480347 -56715085 - MTE2a LTR MaLR 0 379 1 6 1656 986 210 71 5 chr1 140480669 140480865 -56714567 - B3 SINE B2 -4 212 4 6 1656 225 285 8 0 chr1 140481816 140481876 -56713556 - MIRm SINE MIR -169 99 36 6 1656 854 172 76 0 chr1 140485052 140485209 -56710223 - URR1A DNA MER1_type 0 226 58 6 1656 249 57 0 0 chr1 140485748 140485783 -56709649 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1656 251 146 0 18 chr1 140487961 140488017 -56707415 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1656 214 293 0 0 chr1 140488017 140488075 -56707357 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1656 3374 207 58 100 chr1 140488745 140489736 -56705696 + Lx7 LINE L1 6541 7489 -207 6 1656 910 92 1 24 chr1 140490052 140490190 -56705242 + B1_Mus2 SINE Alu 11 147 0 6 1656 1433 68 0 4 chr1 140494524 140494759 -56700673 + (CA)n Simple_repeat Simple_repeat 1 234 0 6 1656 335 207 50 83 chr1 140495362 140495483 -56699949 + MT2B LTR ERVL 147 263 -338 6 1656 627 188 8 0 chr1 140495383 140495500 -56699932 + B1_Mus1 SINE Alu 8 125 -23 6 1656 288 0 0 0 chr1 140495509 140495541 -56699891 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1656 1196 51 0 6 chr1 140495541 140495698 -56699734 + (GGGAA)n Simple_repeat Simple_repeat 4 159 0 6 1656 272 85 0 21 chr1 140495780 140495828 -56699604 - B1_Mur4 SINE Alu 0 150 104 6 1656 215 284 36 24 chr1 140496163 140496246 -56699186 - B3A SINE B2 -114 84 1 6 1656 5475 40 0 0 chr1 140498188 140498805 -56696627 - L1Md_T LINE L1 0 6582 5966 6 1656 1460 201 107 54 chr1 140499314 140499650 -56695782 - MTD LTR MaLR -52 367 14 6 1656 202 51 24 49 chr1 140499658 140499699 -56695733 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1656 297 130 0 55 chr1 140500282 140500355 -56695077 + (CATA)n Simple_repeat Simple_repeat 2 70 0 1 1656 998 214 212 21 chr1 140500541 140500880 -56694552 - MTD LTR MaLR 0 419 16 2 1656 303 28 0 0 chr1 140500899 140500935 -56694497 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1656 269 26 26 0 chr1 140501663 140501701 -56693731 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1656 243 188 0 0 chr1 140501938 140501986 -56693446 + (CGTG)n Simple_repeat Simple_repeat 1 48 0 5 1656 610 206 133 30 chr1 140501988 140502153 -56693279 - B3A SINE B2 -16 182 1 6 1656 33 43 0 0 chr1 140502649 140502696 -56692736 + AT_rich Low_complexity Low_complexity 1 47 0 7 1656 390 42 0 0 chr1 140502749 140502797 -56692635 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1656 310 258 90 6 chr1 140503971 140504127 -56691305 + (TAGG)n Simple_repeat Simple_repeat 2 170 0 9 1656 243 88 0 0 chr1 140505882 140505916 -56689516 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1656 270 0 0 0 chr1 140506024 140506054 -56689378 + (CAG)n Simple_repeat Simple_repeat 3 32 0 1 1656 3712 23 2 0 chr1 140506347 140506742 -56688690 + MTA_Mm LTR MaLR 1 396 0 1 1656 10331 15 0 0 chr1 140506742 140507840 -56687592 + MTA_Mm-int LTR MaLR 1 1098 0 1 1656 3726 20 2 0 chr1 140507840 140508235 -56687197 + MTA_Mm LTR MaLR 1 396 0 1 1656 270 0 0 0 chr1 140508908 140508938 -56686494 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1657 1492 302 144 13 chr1 140509607 140510121 -56685311 + MTE-int LTR MaLR 944 1527 -53 1 1657 800 294 19 79 chr1 140510121 140510438 -56684994 + ORR1E LTR MaLR 1 298 -61 1 1657 263 260 109 51 chr1 140510465 140510603 -56684829 + MLT1C LTR MaLR 162 307 -160 1 1657 326 268 8 0 chr1 140510618 140510741 -56684691 + G-rich Low_complexity Low_complexity 6 129 0 1 1657 621 26 0 72 chr1 140510720 140510845 -56684587 + (GAA)n Simple_repeat Simple_repeat 3 118 0 1 1657 189 0 0 0 chr1 140512101 140512122 -56683310 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1657 584 248 55 34 chr1 140513328 140513474 -56681958 + B1F SINE Alu 1 149 0 2 1657 23 68 0 0 chr1 140516073 140516117 -56679315 + GC_rich Low_complexity Low_complexity 1 44 0 2 1657 506 291 185 50 chr1 140517407 140517957 -56677475 - L2a LINE L2 -230 3196 2545 2 1657 396 0 0 0 chr1 140521268 140521312 -56674120 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1657 24 53 0 0 chr1 140521373 140521411 -56674021 + AT_rich Low_complexity Low_complexity 1 38 0 2 1657 359 202 16 16 chr1 140523600 140523721 -56671711 + CT-rich Low_complexity Low_complexity 4 124 0 2 1657 529 269 18 18 chr1 140523908 140524051 -56671381 + RSINE1 SINE B4 3 146 -19 2 1657 285 98 0 0 chr1 140524051 140524092 -56671340 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1657 529 269 18 18 chr1 140524092 140524111 -56671321 + RSINE1 SINE B4 147 165 0 2 1657 262 286 56 19 chr1 140525321 140525428 -56670004 + MLT2B3 LTR ERVL 6 116 -438 2 1657 233 352 31 47 chr1 140525501 140525629 -56669803 + ORR1E LTR MaLR 97 222 -137 2 1657 462 244 0 0 chr1 140526033 140526152 -56669280 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1657 227 180 48 32 chr1 140526276 140526339 -56669093 - L1M5 LINE L1 -610 5569 5506 3 1657 920 228 38 19 chr1 140526670 140526880 -56668552 - B3 SINE B2 0 216 3 3 1657 843 159 0 0 chr1 140527925 140528076 -56667356 + GA-rich Low_complexity Low_complexity 2 152 0 3 1657 747 289 101 30 chr1 140528109 140528505 -56666927 + Lx6 LINE L1 5139 5562 -318 3 1657 629 239 15 41 chr1 140528516 140528712 -56666720 + L1_Mur3 LINE L1 127 317 -7411 3 1657 1542 163 11 0 chr1 140528723 140529005 -56666427 + L1_Mur3 LINE L1 1337 1621 -4259 3 1657 1731 237 76 7 chr1 140529002 140529422 -56666010 + Lx6 LINE L1 6035 6457 -1003 3 1657 2441 228 51 0 chr1 140529428 140529959 -56665473 + Lx6 LINE L1 6364 6921 -539 3 1657 570 29 0 0 chr1 140529980 140530048 -56665384 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 3 1657 189 0 0 0 chr1 140530159 140530180 -56665252 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1657 578 143 9 0 chr1 140530208 140530313 -56665119 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 1657 279 0 0 0 chr1 140531200 140531231 -56664201 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1657 495 211 46 72 chr1 140531761 140531914 -56663518 + L1_Rod LINE L1 1421 1569 -4278 4 1657 5629 212 62 10 chr1 140531883 140533106 -56662326 + Lx9 LINE L1 6358 7644 0 4 1657 208 0 0 59 chr1 140533189 140533223 -56662209 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1657 606 228 34 45 chr1 140533287 140533466 -56661966 + L1MA8 LINE L1 5401 5577 -714 4 1657 946 72 26 7 chr1 140533479 140533633 -56661799 + (GGA)n Simple_repeat Simple_repeat 3 159 0 4 1657 246 136 0 0 chr1 140534094 140534138 -56661294 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1657 1092 286 142 20 chr1 140534779 140534932 -56660500 + L1MA8 LINE L1 5600 5753 -538 4 1657 4689 129 66 11 chr1 140534932 140535631 -56659801 + RMER19A LTR ERVK 1 737 0 4 1657 1092 286 142 20 chr1 140535631 140536088 -56659344 + L1MA8 LINE L1 5754 6285 -6 4 1657 351 0 0 0 chr1 140536390 140536429 -56659003 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1657 1968 226 170 9 chr1 140536701 140537330 -56658102 - Lx5 LINE L1 -17 7033 6304 4 1657 263 248 42 42 chr1 140537427 140537545 -56657887 - L1MA6 LINE L1 -4 6296 6179 5 1657 386 381 39 36 chr1 140539518 140539957 -56655475 - L2 LINE L2 -411 3008 2569 5 1657 270 314 87 130 chr1 140540069 140540553 -56654879 + MLT1N2 LTR MaLR 78 540 -22 5 1657 550 302 61 28 chr1 140540603 140540866 -56654566 - MLT1A1 LTR MaLR -3 405 78 5 1657 1144 118 0 0 chr1 140540899 140541043 -56654389 - B1_Mur1 SINE Alu -5 144 1 5 1657 450 266 201 39 chr1 140541238 140541492 -56653940 - MLT1A0 LTR MaLR -11 354 60 5 1657 311 224 147 15 chr1 140541701 140541837 -56653595 - RSINE1 SINE B4 -10 155 2 5 1657 34299 80 5 6 chr1 140542279 140545953 -56649479 - L1Md_F2 LINE L1 0 6582 2912 5 1657 5587 73 3 3 chr1 140545953 140546641 -56648791 - L1Md_F2 LINE L1 -1 6581 5894 5 1657 34299 84 5 5 chr1 140546641 140546951 -56648481 - L1Md_F2 LINE L1 -2972 2911 2612 5 1657 2028 50 0 8 chr1 140546951 140547192 -56648240 + L1Md_F2 LINE L1 6332 6570 -12 5 1657 34299 95 19 23 chr1 140547192 140549443 -56645989 - L1Md_F2 LINE L1 -3272 2611 365 5 1657 775 240 25 256 chr1 140549791 140550069 -56645363 + ORR1D1 LTR MaLR 1 182 -192 6 1657 441 0 0 0 chr1 140550069 140550118 -56645314 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 6 1657 775 240 25 256 chr1 140550118 140550315 -56645117 + ORR1D1 LTR MaLR 183 366 -8 6 1657 852 163 0 0 chr1 140550336 140550489 -56644943 + GA-rich Low_complexity Low_complexity 2 154 0 6 1657 265 340 153 22 chr1 140550896 140551170 -56644262 + L2 LINE L2 2096 2405 -1014 6 1657 462 335 88 40 chr1 140551233 140551562 -56643870 + L2 LINE L2 2567 2911 -508 6 1657 208 310 8 50 chr1 140551584 140551703 -56643729 - L2 LINE L2 -595 2824 2711 6 1657 2544 132 2 71 chr1 140551790 140552215 -56643217 + Lx3B LINE L1 6575 6970 -3 6 1657 468 0 0 0 chr1 140552467 140552519 -56642913 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1657 583 253 44 88 chr1 140553429 140553633 -56641799 + B3A SINE B2 3 197 -1 6 1657 24 0 0 0 chr1 140554047 140554071 -56641361 + AT_rich Low_complexity Low_complexity 1 24 0 6 1657 516 16 0 0 chr1 140554926 140554987 -56640445 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1657 2465 153 31 47 chr1 140555665 140556288 -56639144 - RMER17A LTR ERVK -2 887 257 7 1657 2330 111 26 60 chr1 140556303 140556780 -56638652 - RMER17A LTR ERVK -417 489 1 7 1657 3148 201 31 12 chr1 140557272 140557938 -56637494 + Lx9 LINE L1 6965 7643 -1 7 1657 1954 189 27 34 chr1 140558128 140558448 -56636984 + MTD LTR MaLR 3 319 -100 7 1657 2233 127 6 0 chr1 140558448 140558772 -56636660 + ORR1A2 LTR MaLR 2 327 0 7 1657 1954 189 27 34 chr1 140558772 140558862 -56636570 + MTD LTR MaLR 320 410 -9 7 1657 246 307 19 29 chr1 140559951 140560055 -56635377 + L2a LINE L2 3323 3425 -1 7 1657 958 42 8 0 chr1 140560174 140560294 -56635138 + B1_Mus2 SINE Alu 17 137 -10 7 1657 210 37 0 0 chr1 140560294 140560321 -56635111 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1657 22 0 0 0 chr1 140560370 140560392 -56635040 + AT_rich Low_complexity Low_complexity 1 22 0 7 1657 261 200 29 0 chr1 140560891 140560961 -56634471 - Lx9 LINE L1 -12 7632 7561 7 1657 414 0 0 0 chr1 140561773 140561819 -56633613 + (TAA)n Simple_repeat Simple_repeat 3 48 0 8 1657 202 385 76 87 chr1 140562348 140562533 -56632899 - MER5A DNA MER1_type -1 188 6 8 1657 450 0 0 0 chr1 140562691 140562741 -56632691 + (TAA)n Simple_repeat Simple_repeat 2 51 0 8 1657 315 0 0 0 chr1 140563270 140563305 -56632127 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1657 427 417 28 8 chr1 140563576 140563830 -56631602 - MER119 DNA MER1_type -312 271 13 8 1657 550 330 97 76 chr1 140564108 140564583 -56630849 + MLT1G1 LTR MaLR 86 570 -9 8 1657 999 168 21 38 chr1 140565134 140565320 -56630112 + B2_Mm2 SINE B2 6 188 -7 8 1657 826 258 27 11 chr1 140566369 140566557 -56628875 + B3 SINE B2 20 210 -6 8 1657 216 0 0 0 chr1 140566569 140566593 -56628839 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1657 181 83 56 0 chr1 140566688 140566724 -56628708 + (TGGGGG)n Simple_repeat Simple_repeat 6 43 0 8 1657 1061 90 0 14 chr1 140566953 140567099 -56628333 - B1_Mus1 SINE Alu 0 148 5 9 1657 21 0 0 0 chr1 140567144 140567165 -56628267 + AT_rich Low_complexity Low_complexity 1 21 0 9 1657 1099 274 26 94 chr1 140567378 140567728 -56627704 - ORR1E LTR MaLR -2 357 32 9 1657 450 0 0 0 chr1 140567731 140567781 -56627651 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1657 1259 268 79 31 chr1 140567940 140568295 -56627137 + MTEa LTR MaLR 1 372 -7 9 1657 182 258 111 16 chr1 140568369 140568432 -56627000 - MIRc SINE MIR -158 110 42 9 1657 847 282 58 60 chr1 140568795 140568962 -56626470 + Lx8 LINE L1 6492 6650 -823 9 1657 221 0 0 33 chr1 140568962 140568992 -56626440 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1657 847 282 58 60 chr1 140568992 140569171 -56626261 + Lx8 LINE L1 6651 6837 -636 9 1657 698 185 14 14 chr1 140569179 140569327 -56626105 - B1_Mus1 SINE Alu -1 148 1 9 1657 25 65 0 0 chr1 140569809 140569855 -56625577 + AT_rich Low_complexity Low_complexity 1 46 0 9 1657 330 132 0 0 chr1 140569974 140570027 -56625405 + (CCCCCT)n Simple_repeat Simple_repeat 6 58 0 1 1657 25 31 0 0 chr1 140570405 140570437 -56624995 + AT_rich Low_complexity Low_complexity 1 32 0 1 1657 363 213 44 0 chr1 140572263 140572343 -56623089 - PB1D10 SINE Alu -63 84 1 1 1657 350 289 48 40 chr1 140572343 140572408 -56623024 - B4 SINE B4 -205 87 22 1 1657 265 365 60 7 chr1 140572476 140572625 -56622807 - MIRb SINE MIR -46 222 66 1 1657 1707 199 28 11 chr1 140573245 140573606 -56621826 - ORR1B2 LTR MaLR 0 367 1 1 1657 229 250 0 0 chr1 140573745 140573789 -56621643 - MLT1D LTR MaLR -10 495 452 1 1657 512 248 66 70 chr1 140573842 140574098 -56621334 - MER44A DNA MER2_type -70 269 15 1 1657 330 335 33 13 chr1 140574146 140574297 -56621135 - MLT1D LTR MaLR -146 359 206 1 1657 252 248 189 9 chr1 140574719 140574825 -56620607 + MLT1A1 LTR MaLR 2 126 -282 1 1657 241 325 73 85 chr1 140574902 140575067 -56620365 + MLT1A1 LTR MaLR 246 408 0 1 1657 700 325 25 0 chr1 140577820 140578100 -56617332 + B4A SINE B4 1 287 -5 1 1657 210 183 28 14 chr1 140578132 140578204 -56617228 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1657 501 17 0 0 chr1 140580059 140580117 -56615315 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1657 222 37 0 0 chr1 140580218 140580245 -56615187 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1657 206 257 14 14 chr1 140580740 140580811 -56614621 + GA-rich Low_complexity Low_complexity 1 71 0 1 1657 1151 82 0 13 chr1 140582478 140582627 -56612805 - B1_Mus1 SINE Alu 0 148 2 1 1657 629 303 17 0 chr1 140582654 140582832 -56612600 - B3A SINE B2 -16 182 2 1 1657 2130 158 324 4 chr1 140583187 140583745 -56611687 + RMER19A LTR ERVK 1 737 0 1 1657 186 71 0 0 chr1 140585354 140585382 -56610050 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1657 351 0 0 0 chr1 140585449 140585488 -56609944 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1 1657 225 359 0 0 chr1 140586197 140586303 -56609129 + CT-rich Low_complexity Low_complexity 2 107 0 1 1657 378 0 0 0 chr1 140586562 140586604 -56608828 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1657 579 230 0 0 chr1 140586604 140586743 -56608689 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1657 691 324 95 27 chr1 140586934 140587270 -56608162 + MLT1A0 LTR MaLR 1 359 -6 1 1657 1649 189 128 0 chr1 140587284 140587628 -56607804 - MTD LTR MaLR -14 405 18 1 1657 300 286 55 67 chr1 140587856 140588021 -56607411 + L1MC LINE L1 5616 5778 -2104 1 1657 243 343 57 57 chr1 140588342 140588447 -56606985 + Cheshire DNA MER1_type 175 279 -2141 1 1657 23 33 0 0 chr1 140588646 140588676 -56606756 + AT_rich Low_complexity Low_complexity 1 30 0 1 1657 23 33 0 0 chr1 140589321 140589351 -56606081 + AT_rich Low_complexity Low_complexity 1 30 0 1 1657 965 84 30 30 chr1 140589382 140589517 -56605915 + B1_Mm SINE Alu 1 135 -12 1 1657 504 0 0 0 chr1 140589518 140589574 -56605858 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 1 1657 264 167 0 0 chr1 140589574 140589622 -56605810 - MIR SINE MIR -64 198 151 1 1657 196 120 20 20 chr1 140589649 140589700 -56605732 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 1 1657 24 53 0 0 chr1 140589803 140589841 -56605591 + AT_rich Low_complexity Low_complexity 1 38 0 1 1657 244 260 13 25 chr1 140591326 140591405 -56604027 + GA-rich Low_complexity Low_complexity 3 80 0 1 1657 216 273 120 43 chr1 140591556 140591648 -56603784 - MIRm SINE MIR -143 133 35 1 1657 905 337 111 39 chr1 140594432 140595132 -56600300 + Zaphod2 DNA Tip100 108 858 -2666 1 1657 395 251 40 20 chr1 140595296 140595454 -56599978 + L1M2 LINE L1 4816 4958 -1185 1 1657 253 194 43 29 chr1 140595608 140595677 -56599755 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 1 1657 546 16 0 0 chr1 140595706 140595769 -56599663 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1657 758 250 13 6 chr1 140595773 140595930 -56599502 - B3 SINE B2 -54 162 5 1 1657 1344 89 0 0 chr1 140597244 140597631 -56597801 + (TG)n Simple_repeat Simple_repeat 1 387 0 1 1657 487 246 203 0 chr1 140597844 140597982 -56597450 + B4A SINE B4 2 167 -125 1 1657 1344 0 0 33 chr1 140598991 140599173 -56596259 + (TCTCCC)n Simple_repeat Simple_repeat 5 180 0 1 1657 551 80 14 62 chr1 140599174 140599320 -56596112 + CT-rich Low_complexity Low_complexity 4 142 0 1 1657 322 310 70 9 chr1 140599346 140599460 -56595972 + L1ME3A LINE L1 6036 6156 -17 1 1657 257 128 21 0 chr1 140600265 140600312 -56595120 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1657 269 302 30 18 chr1 140601351 140601516 -56593916 + L1MEd LINE L1 979 1145 -4974 1 1657 784 256 28 0 chr1 140601950 140602126 -56593306 + ORR1D1 LTR MaLR 1 181 -193 1 1657 458 139 12 0 chr1 140602126 140602212 -56593220 + CT-rich Low_complexity Low_complexity 2 88 0 1 1657 557 242 110 70 chr1 140602214 140602414 -56593018 + ORR1D1 LTR MaLR 167 374 0 1 1657 2046 207 79 27 chr1 140602703 140603184 -56592248 - RMER20A LTR ERVK 0 516 11 1 1657 371 149 14 0 chr1 140603229 140603303 -56592129 + (CATA)n Simple_repeat Simple_repeat 2 76 0 1 1657 212 319 56 0 chr1 140603460 140603532 -56591900 + AluG_3 SINE Alu 144 219 -92 1 1657 382 279 0 0 chr1 140604236 140604315 -56591117 + B1_Mur4 SINE Alu 66 144 -6 1 1657 269 81 65 0 chr1 140604449 140604511 -56590921 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1657 316 322 94 20 chr1 140605499 140605648 -56589784 + MamSINE1 SINE tRNA 97 256 -34 1 1657 24 0 0 0 chr1 140605758 140605782 -56589650 + AT_rich Low_complexity Low_complexity 1 24 0 1 1657 588 83 9 18 chr1 140606115 140606226 -56589206 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1657 232 242 0 31 chr1 140606227 140606291 -56589141 + GA-rich Low_complexity Low_complexity 4 65 0 1 1657 614 49 12 0 chr1 140606293 140606375 -56589057 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1657 693 333 32 14 chr1 140606376 140606592 -56588840 - B4 SINE B4 0 292 73 1 1657 248 213 53 13 chr1 140606593 140606669 -56588763 - L1MA6 LINE L1 -4 6296 6218 1 1657 1126 191 29 0 chr1 140606781 140606985 -56588447 + B3 SINE B2 1 210 -6 1 1657 512 324 97 0 chr1 140607037 140607213 -56588219 - MTE-int LTR MaLR -344 1236 1044 1 1657 252 0 0 0 chr1 140607229 140607257 -56588175 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1657 2130 160 16 13 chr1 140607292 140607673 -56587759 + MTB_Mm LTR MaLR 1 382 -25 1 1657 201 154 0 0 chr1 140607673 140607712 -56587720 + T-rich Low_complexity Low_complexity 1 39 0 1 1657 298 219 68 68 chr1 140607870 140607958 -56587474 + RSINE1 SINE B4 43 130 -35 1 1657 362 21 21 0 chr1 140607970 140608017 -56587415 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1657 399 184 37 86 chr1 140608037 140608194 -56587238 + L1M2 LINE L1 5163 5321 -822 1 1657 678 289 34 22 chr1 140608198 140608465 -56586967 + MTEa LTR MaLR 1 323 -56 1 1657 3725 298 72 35 chr1 140608548 140609945 -56585487 + ORR1D1-int LTR MaLR 1 1553 -27 1 1657 512 210 50 10 chr1 140609949 140610050 -56585382 + B1_Mur2 SINE Alu 4 108 -41 1 1657 603 322 5 61 chr1 140610043 140610241 -56585191 + MTEb LTR MaLR 120 306 -73 1 1657 297 354 8 45 chr1 140610255 140610388 -56585044 - L2 LINE L2 -702 2717 2590 1 1657 239 254 127 0 chr1 140610393 140610456 -56584976 + ORR1D1 LTR MaLR 24 94 -280 1 1657 724 293 95 23 chr1 140611217 140611521 -56583911 + L2 LINE L2 332 657 -2762 1 1657 505 311 15 7 chr1 140611612 140611748 -56583684 + ID_B1 SINE B4 80 216 -8 1 1657 490 339 147 21 chr1 140612260 140612697 -56582735 + L2 LINE L2 1091 1582 -1837 1 1657 273 311 202 18 chr1 140612940 140613385 -56582047 + L2 LINE L2 2028 2554 -865 1 1657 1710 177 251 73 chr1 140613541 140614060 -56581372 + RMER19C LTR ERVK 1 611 0 1 1657 482 304 24 0 chr1 140614174 140614381 -56581051 + Lx9 LINE L1 7250 7461 -183 1 1657 23 0 0 0 chr1 140614502 140614525 -56580907 + AT_rich Low_complexity Low_complexity 1 23 0 1 1657 292 322 125 4 chr1 140614558 140614814 -56580618 - L1MA4 LINE L1 -176 6124 5838 1 1657 283 315 11 0 chr1 140614846 140614935 -56580497 + L2 LINE L2 2586 2675 -744 1 1657 376 400 25 21 chr1 140614937 140615172 -56580260 + L2 LINE L2 2789 3024 -395 1 1657 558 282 0 52 chr1 140615455 140615627 -56579805 + B3 SINE B2 1 163 -53 1 1657 234 0 0 0 chr1 140615628 140615654 -56579778 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1657 252 0 0 0 chr1 140615834 140615862 -56579570 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1657 621 297 69 16 chr1 140616458 140616646 -56578786 - B3A SINE B2 0 198 1 1 1657 1421 149 0 0 chr1 140618125 140618340 -56577092 + URR1B DNA MER1_type 11 225 0 1 1657 191 386 43 26 chr1 140618377 140618494 -56576938 - MIRb SINE MIR -124 144 26 1 1657 411 241 35 18 chr1 140618974 140619088 -56576344 + PB1D10 SINE Alu 2 117 0 1 1657 234 218 55 0 chr1 140620123 140620233 -56575199 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 1657 1422 37 0 31 chr1 140620688 140620882 -56574550 + L1Md_F3 LINE L1 6383 6570 -14 1 1657 238 270 177 18 chr1 140621507 140621620 -56573812 - MIRb SINE MIR -29 239 109 1 1657 187 347 20 40 chr1 140621765 140621795 -56573637 - MER5A DNA MER1_type -77 112 83 1 1657 521 169 13 66 chr1 140621795 140621947 -56573485 + Lx4B LINE L1 6914 7057 -1 1 1657 187 347 20 40 chr1 140621947 140622015 -56573417 - MER5A DNA MER1_type -107 82 17 1 1657 265 300 11 22 chr1 140622339 140622431 -56573001 + B4A SINE B4 118 208 -84 1 1657 497 250 9 0 chr1 140622940 140623048 -56572384 + B1_Mur1 SINE Alu 41 149 0 1 1657 461 294 0 19 chr1 140623113 140623217 -56572215 + PB1D10 SINE Alu 6 107 -10 1 1657 714 55 0 0 chr1 140623219 140623310 -56572122 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 1 1657 620 265 154 54 chr1 140623573 140623832 -56571600 - B4 SINE B4 -6 286 2 1 1657 234 0 0 0 chr1 140624362 140624388 -56571044 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1657 700 243 128 47 chr1 140624779 140625077 -56570355 + LTR40b LTR ERVL 137 458 -4 1 1657 946 241 56 8 chr1 140625438 140625672 -56569760 + B4A SINE B4 1 245 -47 1 1657 297 0 0 0 chr1 140625674 140625707 -56569725 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1657 477 0 0 0 chr1 140625707 140625759 -56569673 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1657 688 198 57 0 chr1 140625810 140625987 -56569445 + Lx5 LINE L1 6861 7047 -3 2 1657 319 301 29 96 chr1 140626019 140626155 -56569277 + B1F SINE Alu 1 127 -22 2 1657 218 176 20 0 chr1 140626210 140626261 -56569171 + GA-rich Low_complexity Low_complexity 4 55 0 2 1657 289 278 34 85 chr1 140626300 140626418 -56569014 + MLT2B4 LTR ERVL 3 114 -442 2 1657 372 71 0 0 chr1 140626428 140626484 -56568948 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1657 394 365 6 19 chr1 140626503 140626662 -56568770 - RSINE1 SINE B4 -4 161 5 2 1657 332 318 9 0 chr1 140627181 140627288 -56568144 + PB1D10 SINE Alu 2 109 -8 2 1657 1035 196 88 0 chr1 140627299 140627503 -56567929 + ID_B1 SINE B4 2 223 -1 2 1657 200 116 70 0 chr1 140628930 140628973 -56566459 + T-rich Low_complexity Low_complexity 4 49 0 2 1657 439 311 60 68 chr1 140631449 140631684 -56563748 - MER58B DNA MER1_type -2 339 107 2 1657 233 322 17 0 chr1 140631730 140631789 -56563643 + ID2 SINE ID 16 75 -8 2 1657 269 351 158 48 chr1 140632605 140633024 -56562408 + L2a LINE L2 2952 3416 -10 2 1657 229 214 0 51 chr1 140633026 140633085 -56562347 + GA-rich Low_complexity Low_complexity 3 58 0 2 1657 275 311 57 97 chr1 140633161 140633460 -56561972 - MER110-int LTR ERV1 -49 4598 4312 2 1657 643 156 146 15 chr1 140635237 140635367 -56560065 - RMER13A LTR ERVK -713 147 1 2 1657 797 309 131 12 chr1 140637421 140637909 -56557523 + L1MA4A LINE L1 5388 5933 -370 2 1657 1120 29 50 7 chr1 140638193 140638334 -56557098 + B1_Mus2 SINE Alu 1 147 0 2 1657 320 245 106 0 chr1 140638427 140638521 -56556911 - MTD LTR MaLR -5 414 311 2 1657 517 303 144 18 chr1 140638533 140639304 -56556128 - L1M2 LINE L1 -2863 3283 2347 2 1657 399 356 67 55 chr1 140639305 140639605 -56555827 + B4 SINE B4 6 278 -14 2 1657 363 270 0 0 chr1 140639610 140639762 -56555670 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 1657 312 283 92 39 chr1 140639798 140640004 -56555428 - L1MEg LINE L1 -3704 3630 3414 2 207 287 328 5 26 chr1 140640182 140640372 -56555060 - L1MEg LINE L1 -4238 2769 2601 2 1658 318 230 67 16 chr1 140640779 140640895 -56554537 - L1MEg LINE L1 -5155 1841 1725 2 1658 4008 114 8 0 chr1 140641613 140642236 -56553196 + L1_Mm LINE L1 4311 4938 -945 2 1658 7313 59 14 2 chr1 140642234 140643863 -56551569 - L1Md_F2 LINE L1 0 6582 4936 2 1658 794 204 74 30 chr1 140643874 140644076 -56551356 - MTD LTR MaLR -206 213 3 2 1658 292 266 215 15 chr1 140645264 140645394 -56550038 + MLT2B1 LTR ERVL 412 567 0 2 1658 23 0 0 0 chr1 140645632 140645655 -56549777 + AT_rich Low_complexity Low_complexity 1 23 0 2 1658 2238 102 3 53 chr1 140646742 140647083 -56548349 - ORR1A3 LTR MaLR -2 324 1 2 1658 1109 147 127 0 chr1 140647335 140647532 -56547900 + URR1A DNA MER1_type 5 226 0 2 1658 278 277 148 0 chr1 140648055 140648156 -56547276 + B1F SINE Alu 32 147 -2 2 1658 685 257 81 34 chr1 140648166 140648670 -56546762 + Lx8 LINE L1 3056 3583 -2560 2 1658 4519 195 110 67 chr1 140648670 140650031 -56545401 + Lx9 LINE L1 6098 7464 -180 2 1658 306 0 0 0 chr1 140650031 140650065 -56545367 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1658 4519 195 110 67 chr1 140650065 140650149 -56545283 + Lx9 LINE L1 7465 7605 -39 2 1658 765 298 114 36 chr1 140650163 140650939 -56544493 + Lx8 LINE L1 4642 5509 -680 2 1658 705 126 0 0 chr1 140650946 140651057 -56544375 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2 1658 489 297 102 71 chr1 140651062 140651469 -56543963 + Lx8 LINE L1 5493 5915 -1558 2 1658 471 35 0 0 chr1 140651469 140651526 -56543906 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1658 21 0 0 0 chr1 140651762 140651783 -56543649 + AT_rich Low_complexity Low_complexity 1 21 0 2 1658 186 43 0 0 chr1 140652308 140652331 -56543101 + (CG)n Simple_repeat Simple_repeat 1 23 0 2 1658 216 0 0 0 chr1 140652331 140652354 -56543078 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1658 357 24 0 0 chr1 140652354 140652395 -56543037 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1658 189 0 0 0 chr1 140652484 140652505 -56542927 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1658 1308 154 9 9 chr1 140653422 140653645 -56541787 - URR1B DNA MER1_type -2 223 1 2 1658 230 250 27 27 chr1 140653658 140653732 -56541700 + MLT2B5 LTR ERVL 62 135 -380 2 1658 308 292 49 132 chr1 140653785 140653990 -56541442 + MLT2B5 LTR ERVL 368 555 0 2 1658 185 337 0 95 chr1 140654388 140654493 -56540939 - MIRm SINE MIR -42 234 140 2 1658 846 47 23 8 chr1 140655145 140655273 -56540159 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 2 1658 465 66 0 0 chr1 140655290 140655351 -56540081 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1658 577 227 87 43 chr1 140655573 140655757 -56539675 + B3A SINE B2 2 193 -5 2 1658 6101 207 61 1 chr1 140655837 140657095 -56538337 - Lx6 LINE L1 -10 7450 6117 2 1658 1912 169 37 7 chr1 140657109 140657515 -56537917 - L1_Mur3 LINE L1 -587 5293 4876 2 1658 309 287 10 78 chr1 140657540 140657642 -56537790 + PB1D7 SINE Alu 21 115 -5 2 1658 234 295 19 19 chr1 140658481 140658588 -56536844 - L1MA6 LINE L1 -33 6267 6161 2 1658 184 269 43 29 chr1 140658753 140658822 -56536610 + L3 LINE CR1 4283 4352 -137 2 1658 243 152 0 0 chr1 140663887 140663933 -56531499 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1658 276 380 120 19 chr1 140665032 140665241 -56530191 + MIRb SINE MIR 7 236 -32 2 1658 379 331 56 56 chr1 140666058 140666324 -56529108 - L1M2 LINE L1 -946 5200 4932 2 1658 216 143 0 0 chr1 140666325 140666367 -56529065 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 2 1658 384 272 11 0 chr1 140666388 140666480 -56528952 - PB1D10 SINE Alu -12 105 13 2 1658 25 31 0 0 chr1 140666540 140666572 -56528860 + AT_rich Low_complexity Low_complexity 1 32 0 2 1658 1464 282 106 19 chr1 140666629 140667326 -56528106 + L1MA7 LINE L1 5338 6095 -196 2 1658 489 251 18 0 chr1 140668620 140668787 -56526645 + CT-rich Low_complexity Low_complexity 2 171 0 2 1658 1178 62 7 0 chr1 140670035 140670181 -56525251 + B1_Mm SINE Alu 1 147 0 2 1658 856 262 0 28 chr1 140670624 140670840 -56524592 + B3 SINE B2 1 210 -6 2 1658 1431 94 16 0 chr1 140670942 140671134 -56524298 + B2_Mm2 SINE B2 1 195 0 2 1658 268 320 104 26 chr1 140671326 140671413 -56524019 - B3A SINE B2 -31 167 2 2 1658 334 179 60 0 chr1 140671413 140671480 -56523952 - B4A SINE B4 -220 72 2 2 1658 477 0 0 0 chr1 140671645 140671698 -56523734 + (GTTTG)n Simple_repeat Simple_repeat 1 53 0 2 1658 871 276 0 0 chr1 140671960 140672159 -56523273 - B3 SINE B2 -12 204 6 2 1658 333 0 0 0 chr1 140672252 140672289 -56523143 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1658 21 95 0 0 chr1 140672684 140672747 -56522685 + AT_rich Low_complexity Low_complexity 1 63 0 2 1658 950 167 0 6 chr1 140673085 140673266 -56522166 + GA-rich Low_complexity Low_complexity 1 180 0 2 1658 3132 37 45 0 chr1 140673964 140674343 -56521089 - MTA_Mm LTR MaLR 0 396 1 2 1658 610 291 19 28 chr1 140675199 140675415 -56520017 - B3 SINE B2 -2 214 1 2 1658 231 200 0 22 chr1 140675716 140675762 -56519670 + L1M4b LINE L1 1205 1249 -6085 2 1658 1503 294 64 34 chr1 140675828 140676298 -56519134 + L1MB7 LINE L1 5357 5845 -339 2 1658 360 0 0 0 chr1 140676298 140676338 -56519094 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1658 1503 294 64 34 chr1 140676338 140676537 -56518895 + L1MB7 LINE L1 5846 6045 -139 2 1658 490 282 16 0 chr1 140676555 140676679 -56518753 + RSINE1 SINE B4 40 165 0 2 1658 21 57 0 0 chr1 140676691 140676726 -56518706 + AT_rich Low_complexity Low_complexity 1 35 0 2 1658 23 0 0 0 chr1 140678933 140678956 -56516476 + AT_rich Low_complexity Low_complexity 1 23 0 2 1658 207 0 0 0 chr1 140679139 140679162 -56516270 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1658 473 202 22 34 chr1 140681386 140681565 -56513867 + CT-rich Low_complexity Low_complexity 1 177 0 2 1658 1409 34 11 0 chr1 140681576 140681754 -56513678 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 1658 707 137 8 8 chr1 140681756 140681874 -56513558 - B1_Mm SINE Alu -29 118 1 2 1658 374 297 54 8 chr1 140681761 140681890 -56513542 - B4 SINE B4 -88 204 70 2 1658 713 320 142 14 chr1 140682269 140682925 -56512507 + L2 LINE L2 970 1709 -1710 2 1658 294 340 114 18 chr1 140683036 140683309 -56512123 + L2 LINE L2 2444 2742 -677 2 1658 803 154 13 0 chr1 140683825 140683974 -56511458 + CT-rich Low_complexity Low_complexity 2 152 0 2 1658 259 284 15 0 chr1 140683976 140684043 -56511389 - ID4_ SINE ID -14 69 2 2 1658 282 274 61 30 chr1 140684074 140684206 -56511226 - B1F1 SINE Alu -8 141 6 2 1658 1941 142 31 123 chr1 140684412 140684828 -56510604 - ORR1C1 LTR MaLR 0 378 1 2 1658 273 284 153 13 chr1 140684963 140685113 -56510319 - MLT1B LTR MaLR -1 389 219 2 1658 350 208 34 42 chr1 140685252 140685381 -56510051 + MTD LTR MaLR 25 153 -268 2 1658 35913 36 1 0 chr1 140685396 140691236 -56504196 + L1Md_T LINE L1 1 5589 -297 2 1658 9122 5 1 0 chr1 140691236 140692230 -56503202 + L1Md_T LINE L1 5590 6584 -1 2 1658 260 266 220 0 chr1 140692317 140692426 -56503006 + MTD LTR MaLR 287 419 0 2 1658 473 323 41 41 chr1 140693026 140693223 -56502209 - B3A SINE B2 -1 197 1 2 1658 216 0 0 0 chr1 140693525 140693549 -56501883 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 1658 543 249 84 30 chr1 140693752 140693878 -56501554 - L1MA6 LINE L1 0 6300 6167 2 1658 546 16 0 0 chr1 140693878 140693941 -56501491 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1658 339 25 0 0 chr1 140693941 140693980 -56501452 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1658 543 265 82 39 chr1 140693980 140694111 -56501321 - L1MA6 LINE L1 -133 6167 6037 2 1658 418 196 11 11 chr1 140694304 140694397 -56501035 - L1MA6 LINE L1 -390 5910 5818 2 1658 390 21 0 0 chr1 140695571 140695618 -56499814 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1658 395 312 79 33 chr1 140695682 140695897 -56499535 - B4A SINE B4 -66 226 2 2 1658 752 219 62 0 chr1 140696185 140696363 -56499069 + MER5A DNA MER1_type 1 189 0 2 1658 302 281 110 22 chr1 140696407 140696589 -56498843 - L2a LINE L2 -3 3423 3226 2 1658 468 0 0 0 chr1 140698389 140698441 -56496991 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1658 407 246 164 30 chr1 140698548 140698682 -56496750 + RSINE1 SINE B4 2 153 -12 3 1658 671 182 19 116 chr1 140699612 140699767 -56495665 - RLTR20A LTR ERVK -2 539 400 3 1658 1933 35 0 121 chr1 140699767 140700090 -56495342 - RLTR10B LTR ERVK 0 292 9 3 1658 296 48 0 0 chr1 140700112 140700154 -56495278 - RLTR10B LTR ERVK -250 42 1 3 1658 7379 46 0 30 chr1 140700154 140701065 -56494367 - MMERVK10C-int LTR ERVK 0 7581 6698 3 1658 253 47 47 0 chr1 140701067 140701110 -56494322 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 1658 321 71 0 0 chr1 140701110 140701152 -56494280 - MMERVK10C-int LTR ERVK -889 6692 6651 3 1658 2593 102 50 5 chr1 140701143 140701541 -56493891 - MMERVK10C-int LTR ERVK -1771 5810 5414 3 1658 432 294 41 41 chr1 140701551 140701771 -56493661 - MMERVK10C-int LTR ERVK -6015 1566 1347 3 1658 2581 16 117 0 chr1 140701771 140702104 -56493328 - MMERVK10C-int LTR ERVK -1076 911 553 3 1658 219 183 14 40 chr1 140702104 140702178 -56493254 + CT-rich Low_complexity Low_complexity 3 74 0 3 1658 2229 52 0 0 chr1 140702254 140702521 -56492911 - MMERVK10C-int LTR ERVK -7314 267 1 3 1658 1942 35 0 121 chr1 140702521 140702844 -56492588 - RLTR10B LTR ERVK 0 292 9 3 1658 296 48 0 0 chr1 140702866 140702908 -56492524 - RLTR10B LTR ERVK -250 42 1 3 1658 7343 49 0 30 chr1 140702908 140703819 -56491613 - MMERVK10C-int LTR ERVK 0 7581 6698 3 1658 253 47 47 0 chr1 140703821 140703864 -56491568 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 1658 321 71 0 0 chr1 140703864 140703906 -56491526 - MMERVK10C-int LTR ERVK -889 6692 6651 3 1658 2593 102 50 5 chr1 140703897 140704295 -56491137 - MMERVK10C-int LTR ERVK -1771 5810 5414 3 1658 432 294 41 41 chr1 140704305 140704525 -56490907 - MMERVK10C-int LTR ERVK -6015 1566 1347 3 1658 2581 16 117 0 chr1 140704525 140704858 -56490574 - MMERVK10C-int LTR ERVK -1076 911 553 3 1658 197 141 82 27 chr1 140704858 140704931 -56490501 + CT-rich Low_complexity Low_complexity 3 79 0 3 1658 2217 56 0 0 chr1 140705007 140705274 -56490158 - MMERVK10C-int LTR ERVK -7314 267 1 3 1658 1951 32 0 121 chr1 140705274 140705597 -56489835 - RLTR10B LTR ERVK 0 292 9 3 1658 296 48 0 0 chr1 140705605 140705647 -56489785 - RLTR10B LTR ERVK -250 42 1 3 1658 1126 157 82 84 chr1 140705647 140706030 -56489402 - RLTR20A LTR ERVK -136 398 1 3 1658 877 232 15 25 chr1 140706167 140706366 -56489066 - B3A SINE B2 -1 197 1 3 1658 953 131 84 22 chr1 140706436 140706615 -56488817 + B2_Mm2 SINE B2 2 191 -4 3 1658 1073 131 43 11 chr1 140707174 140707359 -56488073 + B2_Mm2 SINE B2 2 192 -3 3 1658 1813 205 25 11 chr1 140707640 140708005 -56487427 - ORR1D1 LTR MaLR -4 370 1 3 1658 370 332 78 11 chr1 140708633 140708901 -56486531 - L3 LINE CR1 -755 3734 3449 3 1658 674 298 60 100 chr1 140709053 140709422 -56486010 - ORR1E LTR MaLR -5 354 1 3 1658 189 0 0 0 chr1 140709502 140709523 -56485909 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1658 641 200 26 65 chr1 140710451 140710606 -56484826 - B1_Mur4 SINE Alu 0 150 2 3 1658 365 256 0 0 chr1 140710606 140710684 -56484748 - 4.5SRNA scRNA scRNA -14 80 3 3 1658 650 281 98 5 chr1 140711026 140711230 -56484202 + ID_B1 SINE B4 2 224 0 3 1658 71 67 0 0 chr1 140711540 140711674 -56483758 + AT_rich Low_complexity Low_complexity 1 134 0 3 1658 425 256 99 0 chr1 140711756 140711877 -56483555 + B1F1 SINE Alu 1 133 -16 3 1658 850 316 59 19 chr1 140712334 140712876 -56482556 + L1M2 LINE L1 2457 3020 -3123 3 1658 373 239 134 47 chr1 140712909 140713080 -56482352 + B3A SINE B2 2 187 -11 3 1658 859 216 101 61 chr1 140713117 140713413 -56482019 - Lx5 LINE L1 0 7050 6743 3 1658 566 267 110 70 chr1 140713423 140713838 -56481594 + L1M2 LINE L1 3042 3474 -2669 3 1658 4415 66 2 14 chr1 140713838 140714420 -56481012 + L1Md_F2 LINE L1 6008 6582 0 3 1658 566 267 110 70 chr1 140714420 140714504 -56480928 + L1M2 LINE L1 3475 3561 -2582 3 1658 399 251 100 82 chr1 140714545 140714875 -56480557 + L1M2 LINE L1 4152 4487 -1656 3 1658 1329 252 60 40 chr1 140715021 140715231 -56480201 - MTD LTR MaLR -2 417 210 3 1658 429 76 0 0 chr1 140715231 140715297 -56480135 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1658 727 169 62 0 chr1 140715297 140715427 -56480005 - B1_Mur2 SINE Alu -10 139 2 3 1658 1329 252 60 40 chr1 140715427 140715549 -56479883 - MTD LTR MaLR -210 209 74 3 1658 1596 85 13 4 chr1 140715549 140715785 -56479647 - L1_Mus3 LINE L1 0 6638 6401 3 1658 1329 252 60 40 chr1 140715785 140715847 -56479585 - MTD LTR MaLR -346 73 15 3 1658 1093 231 73 19 chr1 140715868 140716239 -56479193 + L1M2 LINE L1 5254 5644 -656 3 1658 211 114 0 0 chr1 140716308 140716343 -56479089 - MIRb SINE MIR -187 81 47 3 1658 725 269 56 19 chr1 140718434 140718650 -56476782 + ID_B1 SINE B4 1 224 0 3 1658 494 103 0 13 chr1 140718657 140718736 -56476696 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 3 1658 279 0 0 0 chr1 140718806 140718837 -56476595 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1658 921 264 61 39 chr1 140718968 140719248 -56476184 + RMER1B Other Other 68 353 -713 3 1658 3136 181 99 104 chr1 140719249 140720151 -56475281 + RMER1B Other Other 154 1050 -16 3 1658 1535 32 32 0 chr1 140720152 140720338 -56475094 - B2_Mm1a SINE B2 0 193 2 3 1658 22 0 0 0 chr1 140720348 140720370 -56475062 + AT_rich Low_complexity Low_complexity 1 22 0 3 1658 426 53 0 0 chr1 140725070 140725127 -56470305 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1658 351 0 0 0 chr1 140727197 140727236 -56468196 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1658 180 0 0 0 chr1 140727293 140727313 -56468119 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1658 25 51 0 0 chr1 140727478 140727517 -56467915 + AT_rich Low_complexity Low_complexity 1 39 0 3 1658 31 26 0 0 chr1 140727850 140727888 -56467544 + AT_rich Low_complexity Low_complexity 1 38 0 3 1658 233 176 0 50 chr1 140728234 140728294 -56467138 + T-rich Low_complexity Low_complexity 1 57 0 3 1658 780 11 0 0 chr1 140730197 140730286 -56465146 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1658 558 0 0 0 chr1 140733142 140733204 -56462228 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1658 227 297 16 0 chr1 140733218 140733282 -56462150 + CT-rich Low_complexity Low_complexity 3 67 0 3 1658 253 111 72 24 chr1 140735812 140735854 -56459578 + T-rich Low_complexity Low_complexity 47 89 0 3 1658 219 88 0 0 chr1 140735854 140735888 -56459544 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1658 253 111 72 24 chr1 140735888 140735928 -56459504 + T-rich Low_complexity Low_complexity 4 46 0 3 1658 306 0 0 0 chr1 140736278 140736312 -56459120 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1658 297 0 0 0 chr1 140739262 140739295 -56456137 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1658 239 54 0 26 chr1 140739723 140739761 -56455671 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1658 219 298 6 68 chr1 140740433 140740595 -56454837 + GA-rich Low_complexity Low_complexity 1 152 0 3 1658 198 71 0 0 chr1 140741358 140741386 -56454046 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 1658 222 37 0 0 chr1 140741659 140741686 -56453746 + (G)n Simple_repeat Simple_repeat 1 27 0 3 1658 621 0 0 0 chr1 140743600 140743669 -56451763 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1658 819 135 0 0 chr1 140744232 140744365 -56451067 + (TC)n Simple_repeat Simple_repeat 1 133 0 3 1658 224 152 0 57 chr1 140745936 140745967 -56449465 + G-rich Low_complexity Low_complexity 3 32 0 3 1658 888 61 0 0 chr1 140745967 140746082 -56449350 + (GAGAA)n Simple_repeat Simple_repeat 5 119 0 3 1658 224 152 0 57 chr1 140746082 140746120 -56449312 + G-rich Low_complexity Low_complexity 33 68 0 3 1658 225 0 0 0 chr1 140746487 140746512 -56448920 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1658 1707 26 0 0 chr1 140746656 140746849 -56448583 - B2_Mm1a SINE B2 0 193 1 3 1658 937 191 3 6 chr1 140747631 140747817 -56447615 + RLTR20B1 LTR ERVK 11 221 -306 3 1658 1081 65 14 0 chr1 140748398 140748536 -56446896 + B1_Mm SINE Alu 1 140 -7 3 1658 376 173 19 19 chr1 140749490 140749596 -56445836 + (CAGAGA)n Simple_repeat Simple_repeat 3 108 0 3 1658 255 125 0 0 chr1 140749785 140749825 -56445607 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1658 363 240 115 0 chr1 140751229 140751333 -56444099 - B1_Mur1 SINE Alu -21 128 13 3 1658 23 92 0 0 chr1 140753073 140753138 -56442294 + GC_rich Low_complexity Low_complexity 1 65 0 3 1658 252 193 34 57 chr1 140753399 140753487 -56441945 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 3 1658 1673 21 5 0 chr1 140754200 140754391 -56441041 - B2_Mm1t SINE B2 0 193 2 3 1658 1213 97 47 26 chr1 140754393 140754583 -56440849 - B2_Mm2 SINE B2 -1 194 1 3 1658 270 240 69 13 chr1 140754864 140754949 -56440483 + B1F SINE Alu 38 127 -21 3 1658 1414 218 46 54 chr1 140755304 140755596 -56439836 + ORR1D1 LTR MaLR 1 297 -77 3 1658 6846 72 19 0 chr1 140755596 140756472 -56438960 - RLTR13B1 LTR ERVK 0 893 1 3 1658 1414 218 46 54 chr1 140756472 140756548 -56438884 + ORR1D1 LTR MaLR 298 366 -8 3 1658 270 261 14 0 chr1 140756749 140756818 -56438614 + (CATA)n Simple_repeat Simple_repeat 1 70 0 3 1658 502 255 49 7 chr1 140757213 140757355 -56438077 + Lx7 LINE L1 6201 6348 -1348 3 1658 29988 65 6 55 chr1 140757351 140759080 -56436352 - L1Md_F2 LINE L1 -10 6572 4857 3 1658 465 238 144 21 chr1 140759080 140759316 -56436116 - RLTR10A LTR ERVK 0 411 147 3 1658 29988 65 6 55 chr1 140759316 140762519 -56432913 - L1Md_F2 LINE L1 -10 4856 1677 3 1658 41213 16 2 6 chr1 140762490 140768895 -56426537 - L1Md_A LINE L1 0 6582 204 3 1658 4886 123 10 19 chr1 140768894 140770209 -56425223 - L1Md_A LINE L1 -4164 1719 419 3 1658 3542 240 53 23 chr1 140770251 140771130 -56424302 + Lx7 LINE L1 6457 7362 -334 3 1658 624 27 0 0 chr1 140771130 140771204 -56424228 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 3 1658 3542 240 53 23 chr1 140771204 140771231 -56424201 + Lx7 LINE L1 7363 7389 -307 3 1659 2954 81 13 5 chr1 140772262 140772659 -56422773 + MTB LTR MaLR 1 400 0 3 1659 519 69 0 0 chr1 140773272 140773344 -56422088 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1659 306 0 0 0 chr1 140773900 140773934 -56421498 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1659 208 139 0 0 chr1 140774418 140774454 -56420978 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1659 392 252 42 34 chr1 140774835 140774863 -56420569 - AmnSINE1 SINE SINE -455 120 1 3 1659 592 143 0 0 chr1 140774863 140774954 -56420478 - 5S rRNA rRNA -30 91 1 3 1659 771 255 78 0 chr1 140775053 140775245 -56420187 - B3 SINE B2 -9 207 1 3 1659 488 330 58 24 chr1 140775255 140775463 -56419969 - ID_B1 SINE B4 -8 216 2 3 1659 778 158 7 7 chr1 140775744 140775884 -56419548 + B1_Mur1 SINE Alu 7 146 -3 3 1659 2119 48 15 7 chr1 140776059 140776332 -56419100 + L1Md_F2 LINE L1 6307 6581 -1 3 1659 207 0 0 0 chr1 140776337 140776360 -56419072 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1659 1164 51 0 0 chr1 140776385 140776523 -56418909 + B1_Mus2 SINE Alu 1 138 -9 3 1659 281 271 14 0 chr1 140777203 140777273 -56418159 + ID4_ SINE ID 3 73 -10 3 1659 660 200 6 11 chr1 140777287 140777464 -56417968 + GA-rich Low_complexity Low_complexity 1 176 0 3 1659 1083 16 0 0 chr1 140777475 140777600 -56417832 + (GGAGA)n Simple_repeat Simple_repeat 1 125 0 4 1659 322 353 40 1 chr1 140777961 140778236 -56417196 - L1M2 LINE L1 -214 5666 5381 4 1659 1050 203 15 19 chr1 140778337 140778543 -56416889 - B3 SINE B2 -10 206 2 4 1659 1167 269 93 19 chr1 140778606 140779090 -56416342 - L1M2 LINE L1 -1098 5045 4526 4 1659 552 236 0 0 chr1 140779092 140779202 -56416230 - B1_Mur2 SINE Alu -31 118 9 4 1659 527 43 14 0 chr1 140779203 140779273 -56416159 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1659 277 409 0 9 chr1 140779799 140779915 -56415517 - PB1D7 SINE Alu -5 115 1 4 1659 214 427 12 12 chr1 140779936 140780109 -56415323 + L2 LINE L2 2825 2997 -422 4 1659 316 172 17 33 chr1 140780887 140780947 -56414485 + B1_Mus1 SINE Alu 2 60 -88 4 1659 214 0 0 157 chr1 140780948 140781050 -56414382 + (CAGAG)n Simple_repeat Simple_repeat 5 90 0 4 1659 676 104 0 70 chr1 140781053 140781167 -56414265 + B1_Mus2 SINE Alu 42 147 0 4 1659 216 111 0 0 chr1 140781225 140781261 -56414171 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1659 508 280 154 0 chr1 140781580 140781755 -56413677 - MER2 DNA MER2_type -57 288 87 4 1659 799 296 80 21 chr1 140781798 140782036 -56413396 - B4 SINE B4 -14 278 27 4 1659 410 279 74 0 chr1 140782420 140782542 -56412890 - Lx8 LINE L1 -295 7178 7048 4 1659 299 229 6 21 chr1 140782578 140782700 -56412732 - L1_Mus3 LINE L1 -809 5829 5704 4 1659 824 104 0 0 chr1 140782748 140782863 -56412569 - B2_Mm2 SINE B2 -78 117 3 4 1659 279 293 0 0 chr1 140782871 140782953 -56412479 - L1_Mus3 LINE L1 -1721 5752 5671 4 1659 278 234 0 0 chr1 140783214 140783261 -56412171 - RMER6D LTR ERVK -5 715 669 4 1659 23 33 0 0 chr1 140783388 140783418 -56412014 + AT_rich Low_complexity Low_complexity 1 30 0 4 1659 359 238 31 47 chr1 140783475 140783603 -56411829 + L1VL2 LINE L1 75 200 -6135 4 1659 28218 121 26 5 chr1 140783607 140785877 -56409555 + L1Md_F LINE L1 556 2866 -3017 4 1659 750 23 0 0 chr1 140785877 140785965 -56409467 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 4 1659 28218 101 11 2 chr1 140785965 140788692 -56406740 + L1Md_F LINE L1 2867 5627 -256 4 1659 6782 190 74 23 chr1 140788688 140790530 -56404902 - L1_Mur3 LINE L1 -2866 3014 1101 4 1659 378 0 0 0 chr1 140790530 140790572 -56404860 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1659 1439 193 24 102 chr1 140790572 140790784 -56404648 - L1_Mur3 LINE L1 -6628 1100 893 4 1659 3271 47 20 0 chr1 140791148 140791556 -56403876 - L1Md_F3 LINE L1 -14 6570 6155 4 1659 476 175 10 0 chr1 140791658 140791755 -56403677 + GA-rich Low_complexity Low_complexity 3 100 0 4 1659 414 273 202 35 chr1 140792860 140793088 -56402344 + MIRb SINE MIR 3 268 0 4 1659 362 354 138 14 chr1 140793451 140793806 -56401626 + L1MC4a LINE L1 5512 5910 -1972 4 1659 551 242 6 0 chr1 140793812 140793990 -56401442 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1659 507 220 11 11 chr1 140794031 140794210 -56401222 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1659 224 337 44 34 chr1 140794541 140794665 -56400767 - L2c LINE L2 -15 3411 3260 4 1659 835 167 22 0 chr1 140794733 140794871 -56400561 + B1_Mus2 SINE Alu 1 141 -6 4 1659 325 260 38 38 chr1 140795057 140795137 -56400295 + ID4 SINE ID 2 81 -2 4 1659 1479 58 10 5 chr1 140795742 140795934 -56399498 + B2_Mm2 SINE B2 1 193 -2 4 1659 833 239 14 19 chr1 140796238 140796447 -56398985 + B3 SINE B2 1 208 -8 4 1659 575 291 0 0 chr1 140797041 140797175 -56398257 + B1F SINE Alu 3 136 -13 4 1659 722 93 0 9 chr1 140797183 140797292 -56398140 + (GAGAA)n Simple_repeat Simple_repeat 3 110 0 4 1659 929 357 23 42 chr1 140798221 140798692 -56396740 + LTR16B1 LTR ERVL 10 471 -9 4 1659 252 0 0 0 chr1 140799638 140799666 -56395766 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1659 1204 34 0 13 chr1 140799666 140799815 -56395617 - B1_Mus2 SINE Alu 0 147 1 4 1659 3038 64 32 5 chr1 140800146 140800556 -56394876 + BGLII LTR ERVK 1 421 0 4 1659 230 161 67 67 chr1 140801093 140801153 -56394279 + BGLII_Mus LTR ERVK 59 118 -304 4 1659 660 65 211 18 chr1 140801130 140801239 -56394193 + B1_Mus1 SINE Alu 18 147 -1 4 1659 557 14 14 0 chr1 140801635 140801705 -56393727 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 4 1659 776 243 29 6 chr1 140801714 140801884 -56393548 - B3A SINE B2 -16 182 9 4 1659 333 355 57 26 chr1 140801955 140802149 -56393283 - MIR SINE MIR -45 217 18 4 1659 685 217 67 15 chr1 140803257 140803441 -56391991 - B3 SINE B2 0 193 2 4 1659 225 0 0 0 chr1 140803456 140803481 -56391951 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1659 760 277 20 13 chr1 140804536 140804728 -56390704 - B3A SINE B2 -30 186 1 4 1659 1073 304 83 7 chr1 140804739 140805199 -56390233 + MER63D DNA AcHobo 50 544 -517 4 1659 249 397 85 78 chr1 140805373 140805679 -56389753 + LTR16B1 LTR ERVL 1 308 -172 4 1659 198 0 0 0 chr1 140806185 140806207 -56389225 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1659 21 0 0 0 chr1 140806269 140806290 -56389142 + AT_rich Low_complexity Low_complexity 1 21 0 4 1659 25 0 0 0 chr1 140807688 140807713 -56387719 + AT_rich Low_complexity Low_complexity 1 25 0 4 1659 222 330 26 97 chr1 140807845 140807959 -56387473 - B1F1 SINE Alu -43 106 1 4 1659 1148 72 126 0 chr1 140810042 140810209 -56385223 - B2_Mm2 SINE B2 -7 188 1 4 1659 421 335 51 13 chr1 140810237 140810394 -56385038 + U1 snRNA snRNA 2 164 -1 4 1659 23 33 0 0 chr1 140810442 140810472 -56384960 + AT_rich Low_complexity Low_complexity 1 30 0 4 1659 224 275 116 0 chr1 140810912 140810981 -56384451 + MIR SINE MIR 51 127 -81 4 1659 243 0 0 0 chr1 140811190 140811217 -56384215 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1659 662 164 92 23 chr1 140811217 140811348 -56384084 - B1_Mur4 SINE Alu -10 140 1 4 1659 270 0 0 0 chr1 140811746 140811776 -56383656 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1659 1103 29 0 42 chr1 140811818 140811962 -56383470 + B1_Mus2 SINE Alu 2 139 -8 4 1659 207 0 0 0 chr1 140811962 140811985 -56383447 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1659 579 278 49 0 chr1 140812703 140812908 -56382524 + B3 SINE B2 1 215 -1 4 1659 558 29 0 0 chr1 140813362 140813430 -56382002 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1659 224 333 68 30 chr1 140814077 140814210 -56381222 + MIR SINE MIR 33 170 -92 4 1659 330 377 51 7 chr1 140814230 140814505 -56380927 + Lx8 LINE L1 7062 7348 -125 4 1659 432 0 0 0 chr1 140815000 140815048 -56380384 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1659 280 362 19 98 chr1 140815146 140815178 -56380254 + MLT1D LTR MaLR 317 347 -158 4 1659 1415 141 5 0 chr1 140815178 140815398 -56380034 - URR1B DNA MER1_type 0 225 5 4 1659 280 362 19 98 chr1 140815398 140815570 -56379862 + MLT1D LTR MaLR 348 505 0 4 1659 1133 101 0 0 chr1 140815681 140815829 -56379603 - B1_Mus1 SINE Alu 0 148 1 4 1659 1829 208 62 18 chr1 140816106 140816507 -56378925 - MTD LTR MaLR 0 419 1 4 1659 480 215 69 69 chr1 140816576 140816751 -56378681 - RLTR23 LTR ERV1 -13 417 243 4 1659 183 80 0 0 chr1 140817312 140817337 -56378095 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1659 345 184 0 26 chr1 140819059 140819176 -56376256 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 1659 594 304 117 56 chr1 140819238 140819701 -56375731 - Lx8 LINE L1 -12 7461 6971 4 1659 351 236 0 119 chr1 140820027 140820128 -56375304 + B3A SINE B2 5 93 -105 4 1659 21 0 0 0 chr1 140820166 140820187 -56375245 + AT_rich Low_complexity Low_complexity 1 21 0 4 1659 296 338 35 0 chr1 140820474 140820675 -56374757 - L1ME3 LINE L1 -243 5919 5712 4 1659 267 289 104 52 chr1 140820869 140821004 -56374428 + ORR1E LTR MaLR 1 142 -217 4 1659 398 334 113 34 chr1 140821567 140821920 -56373512 - L1ME3 LINE L1 -967 5179 4799 4 1659 287 321 0 15 chr1 140821981 140822076 -56373356 - B1_Mur1 SINE Alu -25 124 36 4 1659 185 0 0 39 chr1 140822093 140822119 -56373313 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4 1659 338 306 11 82 chr1 140822119 140822360 -56373072 - B4 SINE B4 -75 217 2 4 1659 370 312 47 71 chr1 140822403 140822658 -56372774 - L1ME3 LINE L1 -1502 4644 4396 4 1659 38 0 0 0 chr1 140823126 140823164 -56372268 + AT_rich Low_complexity Low_complexity 1 38 0 4 1659 265 258 23 61 chr1 140823247 140823379 -56372053 - L1ME3 LINE L1 -1890 4256 4130 4 1659 286 303 179 28 chr1 140823597 140823916 -56371516 - Charlie2a DNA MER1_type -1212 1649 1283 4 1659 1054 64 0 14 chr1 140823993 140824135 -56371297 + B1_Mus1 SINE Alu 8 147 -1 4 1659 767 201 53 39 chr1 140824288 140824495 -56370937 + B3 SINE B2 3 212 -4 4 1659 307 319 0 0 chr1 140824522 140824591 -56370841 + ID4 SINE ID 6 74 -9 4 1659 405 0 0 0 chr1 140824591 140824636 -56370796 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1659 406 46 31 0 chr1 140824836 140824901 -56370531 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1659 299 312 93 46 chr1 140825194 140825345 -56370087 + LTR33 LTR ERVL 1 158 -357 4 1659 492 99 0 0 chr1 140826135 140826206 -56369226 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1659 808 215 44 12 chr1 140826206 140826366 -56369066 - B3 SINE B2 -51 165 1 4 1659 451 271 38 15 chr1 140827530 140827661 -56367771 - ORR1E LTR MaLR -222 137 4 4 1659 1214 269 44 35 chr1 140827769 140827795 -56367637 - MTE2a LTR MaLR -1 378 350 4 1659 342 0 0 0 chr1 140827795 140827833 -56367599 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1659 1214 269 44 35 chr1 140827833 140828172 -56367260 - MTE2a LTR MaLR -30 349 10 4 1659 1566 315 118 54 chr1 140828174 140828259 -56367173 - MTE2a-int LTR MaLR 0 1580 1486 4 1659 297 0 0 0 chr1 140828259 140828292 -56367140 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 1659 1566 315 118 54 chr1 140828292 140828485 -56366947 - MTE2a-int LTR MaLR -95 1485 1277 4 1659 1115 131 57 0 chr1 140828485 140828660 -56366772 + B2_Mm2 SINE B2 3 187 -8 4 1659 1566 315 118 54 chr1 140828660 140829142 -56366290 - MTE2a-int LTR MaLR -304 1276 771 4 1659 301 244 179 0 chr1 140829548 140829626 -56365806 + LTR16A LTR ERVL 343 434 -17 4 1659 360 111 0 0 chr1 140829776 140829830 -56365602 + (ATG)n Simple_repeat Simple_repeat 3 56 0 4 1659 207 0 0 0 chr1 140829972 140829995 -56365437 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1659 187 31 30 30 chr1 140830238 140830271 -56365161 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1659 682 191 30 0 chr1 140830600 140830731 -56364701 - B1_Mur1 SINE Alu -14 135 1 5 1659 294 140 34 42 chr1 140831134 140831253 -56364179 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 1659 198 0 0 0 chr1 140831737 140831759 -56363673 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1659 1650 303 49 45 chr1 140831872 140832607 -56362825 - Lx8 LINE L1 -310 7163 6426 5 1659 2438 93 6 0 chr1 140833269 140833592 -56361840 - ORR1A2 LTR MaLR 0 327 3 5 1659 664 191 91 8 chr1 140834889 140835021 -56360411 + B1_Mus2 SINE Alu 3 145 -2 5 1659 226 100 39 20 chr1 140835022 140835073 -56360359 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 5 1659 566 167 0 0 chr1 140835313 140835409 -56360023 + B3 SINE B2 35 130 -86 5 1659 217 333 29 0 chr1 140835513 140835582 -56359850 - ID4_ SINE ID -10 73 3 5 1659 465 34 0 0 chr1 140835733 140835792 -56359640 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1659 619 286 122 4 chr1 140836933 140837179 -56358253 - L1MA8 LINE L1 -4 6308 6034 5 1659 752 266 105 20 chr1 140837209 140837504 -56357928 - L1MA8 LINE L1 -371 5920 5601 5 1659 451 278 50 22 chr1 140837630 140837810 -56357622 + L1M2 LINE L1 4701 4885 -1258 5 1659 599 212 38 9 chr1 140837897 140838079 -56357353 - MT2A LTR ERVL -158 443 95 5 1659 2117 270 61 30 chr1 140838127 140838187 -56357245 - Charlie12 DNA MER1_type -7 2866 2813 5 1659 2872 192 14 37 chr1 140838187 140838360 -56357072 + RMER15 LTR ERVL 1 166 -409 5 1659 333 0 0 0 chr1 140838360 140838397 -56357035 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1659 2872 192 14 37 chr1 140838397 140838812 -56356620 + RMER15 LTR ERVL 167 575 0 5 1659 2117 270 61 30 chr1 140838812 140839557 -56355875 - Charlie12 DNA MER1_type -61 2812 2036 5 1659 659 271 5 43 chr1 140839562 140839770 -56355662 - Charlie12 DNA MER1_type -994 1879 1680 5 1659 491 258 126 60 chr1 140839841 140839920 -56355512 - Lx9 LINE L1 -57 7587 7500 5 1659 207 100 0 0 chr1 140839920 140839950 -56355482 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 5 1659 2342 116 12 3 chr1 140839950 140840288 -56355144 + ORR1A1 LTR MaLR 5 345 -1 5 1659 491 258 126 60 chr1 140840288 140840313 -56355119 - Lx9 LINE L1 -145 7499 7477 5 1659 183 80 0 0 chr1 140840313 140840338 -56355094 + (TATG)n Simple_repeat Simple_repeat 2 26 0 5 1659 491 258 126 60 chr1 140840338 140840548 -56354884 - Lx9 LINE L1 -168 7476 7252 5 1659 339 335 27 38 chr1 140840583 140840769 -56354663 - Charlie12 DNA MER1_type -1538 1335 1152 5 1659 899 209 18 62 chr1 140840769 140840993 -56354439 - Lx9 LINE L1 -162 7482 7269 5 1659 455 187 64 43 chr1 140840996 140841136 -56354296 + Lx9 LINE L1 7499 7641 -3 5 1659 329 251 144 48 chr1 140841200 140841367 -56354065 - Charlie12 DNA MER1_type -1820 1053 871 5 1659 306 92 12 6 chr1 140841350 140841418 -56354014 + B1_Mm SINE Alu 52 147 0 5 1659 725 168 7 0 chr1 140841427 140841582 -56353850 + GA-rich Low_complexity Low_complexity 2 157 0 5 1659 482 221 61 0 chr1 140841596 140841727 -56353705 - Charlie12 DNA MER1_type -2013 860 722 5 1659 394 204 0 109 chr1 140841777 140841887 -56353545 + B4 SINE B4 1 98 -194 5 1659 975 277 92 22 chr1 140841915 140842869 -56352563 - L1M3 LINE L1 -2437 3703 2597 5 1659 1642 36 0 20 chr1 140842886 140843083 -56352349 + B2_Mm1a SINE B2 1 193 0 5 1659 1026 159 51 5 chr1 140843352 140843548 -56351884 - MTC LTR MaLR -21 400 196 5 1659 3544 28 0 135 chr1 140843590 140844094 -56351338 - RLTR10C LTR ERVK 0 436 1 5 1659 7716 37 2 51 chr1 140844094 140845073 -56350359 - MMERVK10C-int LTR ERVK 0 7581 6651 5 1659 8930 37 0 0 chr1 140845064 140846085 -56349347 - MMERVK10C-int LTR ERVK -1771 5810 4790 5 1659 1980 45 0 2 chr1 140846078 140846513 -56348919 - MMERVK10C-int LTR ERVK -1100 887 652 5 1659 366 67 0 0 chr1 140846516 140846561 -56348871 - MMERVK10C-int LTR ERVK -6405 137 93 5 1659 274 106 79 45 chr1 140846561 140846650 -56348782 + CT-rich Low_complexity Low_complexity 3 94 0 5 1659 2076 57 11 4 chr1 140846732 140846997 -56348435 - MMERVK10C-int LTR ERVK -7314 267 1 5 1659 1173 20 513 0 chr1 140846997 140847190 -56348242 - RLTR10B LTR ERVK 0 292 1 5 1659 882 58 0 0 chr1 140847190 140847311 -56348121 - B1_Mm SINE Alu -26 121 1 5 1659 1161 169 0 52 chr1 140847311 140847519 -56347913 - MTC LTR MaLR -213 208 13 5 1659 221 111 22 22 chr1 140847522 140847568 -56347864 + A-rich Low_complexity Low_complexity 2 47 0 5 1659 356 59 20 0 chr1 140847668 140847719 -56347713 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1659 332 195 0 0 chr1 140847780 140847857 -56347575 - Lx9 LINE L1 -95 7549 7473 5 1659 251 89 54 0 chr1 140847869 140847925 -56347507 - B2_Mm2 SINE B2 0 195 137 5 1659 1091 161 5 11 chr1 140847939 140848127 -56347305 + Lx9 LINE L1 7300 7486 -158 5 1659 1450 55 27 0 chr1 140848127 140848310 -56347122 + B2_Mm1t SINE B2 2 189 -4 5 1659 2368 219 37 0 chr1 140848310 140848794 -56346638 - Lx9 LINE L1 -506 7138 6637 5 1659 261 221 26 0 chr1 140848907 140848984 -56346448 + L1MA4 LINE L1 5364 5442 -855 5 1659 566 300 87 18 chr1 140848973 140849334 -56346098 + L1MA4 LINE L1 5650 6033 -267 5 1659 651 279 89 55 chr1 140849438 140849821 -56345611 + L1MA9 LINE L1 5452 5847 -465 5 1659 292 348 45 0 chr1 140849928 140850040 -56345392 - PB1D10 SINE Alu 0 117 1 5 1659 337 309 78 32 chr1 140850183 140850337 -56345095 - L1M3e LINE L1 -5150 1880 1720 5 1659 324 358 82 77 chr1 140850307 140851343 -56344089 - L1M3e LINE L1 -5627 1403 401 5 1659 271 301 65 52 chr1 140851505 140851659 -56343773 - L1M3e LINE L1 -6874 156 1 5 1659 729 288 39 13 chr1 140851745 140851974 -56343458 + Tigger5 DNA MER2_type 8 242 -2164 5 1659 232 27 0 51 chr1 140852026 140852065 -56343367 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1659 437 202 0 0 chr1 140852078 140852157 -56343275 + B1F SINE Alu 62 140 -9 5 1659 208 308 94 40 chr1 140852678 140852827 -56342605 + L2b LINE L2 2976 3132 -243 5 1659 1116 81 0 0 chr1 140854034 140854170 -56341262 + B1_Mm SINE Alu 2 137 -10 5 1659 240 59 0 0 chr1 140854170 140854204 -56341228 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1659 1067 70 34 20 chr1 140854441 140854573 -56340859 + B1_Mus1 SINE Alu 1 137 -11 5 1659 297 0 0 0 chr1 140854573 140854606 -56340826 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1659 1067 70 34 20 chr1 140854606 140854619 -56340813 + B1_Mus1 SINE Alu 138 148 0 5 1659 645 174 0 132 chr1 140854795 140854947 -56340485 - B1_Mur4 SINE Alu -17 133 2 5 1659 256 292 15 0 chr1 140858110 140858175 -56337257 - ID4 SINE ID -10 73 8 5 1659 187 231 45 30 chr1 140858987 140859054 -56336378 - MIRm SINE MIR -98 178 111 5 1659 23 0 0 0 chr1 140859133 140859156 -56336276 + AT_rich Low_complexity Low_complexity 1 23 0 5 1659 243 0 0 0 chr1 140859210 140859237 -56336195 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1659 219 69 0 0 chr1 140860284 140860313 -56335119 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 5 1659 276 30 0 0 chr1 140860603 140860636 -56334796 + (CGGG)n Simple_repeat Simple_repeat 3 35 0 5 1659 495 0 0 0 chr1 140861360 140861415 -56334017 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1659 222 262 0 47 chr1 140861594 140861658 -56333774 - ID4_ SINE ID -18 65 5 5 1659 234 0 0 0 chr1 140861865 140861891 -56333541 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1659 630 140 9 0 chr1 140862463 140862570 -56332862 + B1_Mus2 SINE Alu 40 147 0 5 1659 393 301 73 94 chr1 140864522 140864808 -56330624 - B4 SINE B4 -11 281 2 5 1659 382 221 104 8 chr1 140864981 140865105 -56330327 - B1F1 SINE Alu 0 149 1 5 1659 1213 54 0 0 chr1 140865670 140865818 -56329614 - B1_Mus1 SINE Alu 0 148 1 5 1659 23 0 0 0 chr1 140866190 140866213 -56329219 + AT_rich Low_complexity Low_complexity 1 23 0 5 1659 680 235 57 36 chr1 140866213 140866407 -56329025 - B3A SINE B2 0 198 1 5 1659 206 0 69 0 chr1 140867158 140867187 -56328245 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1659 1154 51 0 0 chr1 140867187 140867324 -56328108 - B1_Mm SINE Alu -8 139 3 5 1659 23 0 0 0 chr1 140867551 140867574 -56327858 + AT_rich Low_complexity Low_complexity 1 23 0 5 1659 835 192 286 97 chr1 140868429 140868799 -56326633 - RMER10A LTR ERVL -2 440 1 5 1659 447 19 0 0 chr1 140868883 140868935 -56326497 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1659 1083 44 44 0 chr1 140869812 140869948 -56325484 + B1_Mus1 SINE Alu 2 143 -5 5 1659 254 260 13 52 chr1 140870135 140870212 -56325220 + ID4_ SINE ID 7 80 -3 5 1659 325 184 40 0 chr1 140870529 140870605 -56324827 + ID4_ SINE ID 2 80 -3 5 1659 322 298 105 18 chr1 140870953 140871124 -56324308 - MIR SINE MIR -69 193 8 5 1659 29 0 0 0 chr1 140871228 140871257 -56324175 + AT_rich Low_complexity Low_complexity 1 29 0 5 1659 1409 164 4 4 chr1 140871781 140872007 -56323425 + URR1A DNA MER1_type 1 226 0 5 1659 300 53 0 0 chr1 140873476 140873514 -56321918 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 5 1659 387 0 0 0 chr1 140873515 140873558 -56321874 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1659 244 262 16 0 chr1 140874486 140874547 -56320885 + C-rich Low_complexity Low_complexity 2 63 0 5 1659 235 146 36 0 chr1 140874997 140875052 -56320380 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 5 1659 24 32 0 0 chr1 140875082 140875113 -56320319 + AT_rich Low_complexity Low_complexity 1 31 0 5 1659 234 157 56 14 chr1 140875123 140875155 -56320277 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1659 1262 47 101 0 chr1 140875155 140875324 -56320108 - B2_Mm1a SINE B2 -7 186 1 5 1659 234 157 56 14 chr1 140875324 140875362 -56320070 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1659 201 39 0 0 chr1 140875367 140875393 -56320039 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1659 287 240 200 0 chr1 140875408 140875508 -56319924 - B1F SINE Alu 0 149 30 5 1659 601 118 59 0 chr1 140875727 140875829 -56319603 + Lx5 LINE L1 5662 5769 -1281 5 1659 2448 31 0 210 chr1 140875846 140876332 -56319100 + RLTR10 LTR ERVK 1 384 -6 5 1659 1614 27 27 0 chr1 140876355 140876543 -56318889 + B2_Mm1a SINE B2 1 193 0 5 1659 2648 16 0 178 chr1 140876564 140877031 -56318401 + RLTR10 LTR ERVK 1 384 -6 5 1659 1173 177 22 22 chr1 140877037 140877268 -56318164 - RMER4B LTR ERVK -16 569 339 5 1659 339 85 0 0 chr1 140877700 140877747 -56317685 + (TATG)n Simple_repeat Simple_repeat 3 49 0 5 1659 395 210 168 10 chr1 140877771 140877872 -56317560 - PB1D9 SINE Alu -1 119 3 5 1659 1165 68 14 0 chr1 140878038 140878184 -56317248 - B1_Mur4 SINE Alu 0 150 3 5 1659 381 159 14 14 chr1 140881176 140881246 -56314186 - RLTR31B_Mm LTR ERVK 0 557 488 5 1659 280 146 0 0 chr1 140881250 140881298 -56314134 - RLTR31B_Mm LTR ERVK -509 48 1 5 1659 552 186 103 15 chr1 140882094 140882230 -56313202 - B1_Mur1 SINE Alu -1 148 1 5 1659 763 68 8 78 chr1 140882356 140882484 -56312948 - B1_Mus2 SINE Alu 0 147 29 5 1659 1058 58 0 67 chr1 140882484 140882633 -56312799 - B1_Mus2 SINE Alu -8 139 1 5 1659 638 152 7 83 chr1 140882633 140882648 -56312784 - B1F2 SINE Alu -120 29 17 5 1659 512 285 131 57 chr1 140882748 140883098 -56312334 - Lx8 LINE L1 -6 7467 7092 6 1659 503 348 19 6 chr1 140883605 140883764 -56311668 - RSINE1 SINE B4 -2 163 3 6 1659 231 256 222 41 chr1 140883843 140884014 -56311418 - L1MC1 LINE L1 -55 6278 6077 6 1659 607 269 84 73 chr1 140884203 140884476 -56310956 - B4 SINE B4 -16 276 1 6 1659 927 287 86 62 chr1 140884619 140884817 -56310615 - L1MEf LINE L1 -2611 3708 3514 6 1659 1255 98 16 47 chr1 140884817 140885009 -56310423 - B2_Mm2 SINE B2 -9 186 1 6 1659 927 287 86 62 chr1 140885009 140885184 -56310248 - L1MEf LINE L1 -2806 3513 3341 6 1659 2779 132 32 2 chr1 140885184 140885647 -56309785 - Lx3B LINE L1 0 6973 6497 6 1659 927 287 86 62 chr1 140885647 140885779 -56309653 - L1MEf LINE L1 -2979 3340 3204 6 1659 1232 120 41 14 chr1 140885779 140885998 -56309434 - URR1B DNA MER1_type 0 225 1 6 1659 927 287 86 62 chr1 140885998 140886549 -56308883 - L1MEf LINE L1 -3116 3203 2625 6 1659 259 314 47 9 chr1 140886640 140886746 -56308686 - B1F2 SINE Alu -38 111 2 6 1659 361 257 68 19 chr1 140886783 140887066 -56308366 - L1MEf LINE L1 -3731 2588 2270 6 1659 314 165 44 66 chr1 140887124 140887215 -56308217 - PB1D10 SINE Alu -23 94 6 6 1659 239 162 62 86 chr1 140887155 140887236 -56308196 - ID_B1 SINE B4 -75 149 71 6 1659 33 25 0 0 chr1 140887820 140887860 -56307572 + AT_rich Low_complexity Low_complexity 1 40 0 6 1659 845 70 0 0 chr1 140887860 140887975 -56307457 - B1_Mm SINE Alu -3 144 30 6 1659 213 39 0 0 chr1 140888629 140888655 -56306777 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 6 1659 379 270 106 50 chr1 140888677 140888876 -56306556 + B3 SINE B2 2 211 -5 6 1659 236 384 134 38 chr1 140889753 140889991 -56305441 + L2a LINE L2 2940 3200 -226 6 1659 294 272 120 0 chr1 140890116 140890208 -56305224 + MER2B DNA MER2_type 233 335 -1 6 1659 184 241 293 0 chr1 140890478 140890536 -56304896 + MIR3 SINE MIR 86 160 -48 6 1659 186 103 0 0 chr1 140891052 140891081 -56304351 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 6 1659 792 194 7 0 chr1 140891085 140891229 -56304203 - B1_Mur1 SINE Alu -4 145 1 6 1659 411 219 24 0 chr1 140891286 140891368 -56304064 + B4 SINE B4 2 85 -207 6 1659 2274 104 51 59 chr1 140891389 140891778 -56303654 - ORR1B1 LTR MaLR -8 386 1 6 1659 449 323 113 6 chr1 140891778 140891942 -56303490 + B4A SINE B4 107 288 -4 6 1659 384 22 0 0 chr1 140892082 140892127 -56303305 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 6 1659 840 249 33 9 chr1 140892956 140893167 -56302265 + B3 SINE B2 1 216 0 6 1659 606 28 0 0 chr1 140893607 140893679 -56301753 + (TTTCC)n Simple_repeat Simple_repeat 3 74 0 6 1659 762 153 17 22 chr1 140893682 140893862 -56301570 + CT-rich Low_complexity Low_complexity 2 180 0 6 1659 1010 71 14 28 chr1 140893862 140894007 -56301425 - B1_Mus1 SINE Alu 0 148 6 6 1659 1013 71 0 25 chr1 140894008 140894168 -56301264 + (TCC)n Simple_repeat Simple_repeat 3 158 0 6 1659 1259 118 2 8 chr1 140894183 140894363 -56301069 + B2_Mm2 SINE B2 1 190 -26 6 1659 288 0 0 0 chr1 140894363 140894395 -56301037 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1659 4014 66 22 17 chr1 140894397 140894934 -56300498 - L1Md_F2 LINE L1 -19 6563 6024 6 1659 805 221 75 70 chr1 140894934 140894964 -56300468 + B3 SINE B2 191 215 -1 6 1659 833 257 57 115 chr1 140895123 140895800 -56299632 - L1MA5 LINE L1 -163 6137 5491 6 1659 219 36 0 0 chr1 140895817 140895845 -56299587 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1659 344 182 0 35 chr1 140895855 140895912 -56299520 - B3 SINE B2 -160 56 2 6 1659 186 43 0 0 chr1 140896415 140896438 -56298994 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 1659 23 0 0 0 chr1 140896713 140896736 -56298696 + AT_rich Low_complexity Low_complexity 1 23 0 6 1659 431 284 63 0 chr1 140898552 140898647 -56296785 + B1F1 SINE Alu 3 103 -46 6 1659 3200 169 77 36 chr1 140898953 140899677 -56295755 - RMER6A LTR ERVK 0 756 3 6 1659 1395 159 170 64 chr1 140900339 140900681 -56294751 - ORR1C1 LTR MaLR 0 378 1 6 1659 437 299 14 14 chr1 140900919 140901065 -56294367 - B1F SINE Alu 0 149 4 6 1659 911 205 65 0 chr1 140901256 140901456 -56293976 - B3 SINE B2 0 216 4 6 1659 464 248 104 18 chr1 140901483 140901647 -56293785 + B3A SINE B2 3 180 -18 6 1659 207 189 0 0 chr1 140901648 140901701 -56293731 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1659 785 265 65 25 chr1 140902001 140902202 -56293230 + B3 SINE B2 2 210 -6 6 1659 454 48 0 0 chr1 140902223 140902286 -56293146 + L1_Mus2 LINE L1 6503 6565 -1 6 1660 189 103 16 49 chr1 140903658 140903719 -56291713 + T-rich Low_complexity Low_complexity 3 61 0 6 1660 816 262 15 0 chr1 140903722 140903928 -56291504 - B3 SINE B2 -5 211 3 6 1660 32 26 0 0 chr1 140903933 140903972 -56291460 + AT_rich Low_complexity Low_complexity 1 39 0 6 1660 1132 82 0 0 chr1 140903972 140904119 -56291313 - B1_Mus1 SINE Alu 0 148 2 6 1660 441 301 132 10 chr1 140905113 140905402 -56290030 - Lx7 LINE L1 -389 7307 6984 6 1660 1016 179 42 13 chr1 140905430 140905668 -56289764 - L1_Rod LINE L1 -913 4934 4690 6 1660 249 182 0 0 chr1 140905680 140905735 -56289697 + CT-rich Low_complexity Low_complexity 1 55 0 6 1660 566 132 0 0 chr1 140905749 140905832 -56289600 - B1_Mus2 SINE Alu -16 131 49 6 1660 288 197 26 78 chr1 140905782 140905859 -56289573 - RLTR25B LTR ERVK -530 498 426 6 1660 756 144 120 16 chr1 140905886 140906069 -56289363 - L1_Rod LINE L1 -1417 4430 4229 6 1660 437 302 132 58 chr1 140906083 140906448 -56288984 - L1MEf LINE L1 -4713 1487 1096 6 1660 919 262 141 40 chr1 140906480 140906857 -56288575 + MTD LTR MaLR 3 417 -2 6 1660 319 273 227 0 chr1 140906883 140907015 -56288417 - HAL1-3A_ME LINE L1 -414 2444 2283 6 1660 198 0 0 0 chr1 140907138 140907160 -56288272 + (CCTG)n Simple_repeat Simple_repeat 2 23 0 6 1660 21 0 0 0 chr1 140907795 140907816 -56287616 + AT_rich Low_complexity Low_complexity 1 21 0 6 1660 180 260 20 0 chr1 140908688 140908738 -56286694 + L3 LINE CR1 2159 2209 -2280 6 1660 23 0 0 0 chr1 140909304 140909327 -56286105 + AT_rich Low_complexity Low_complexity 1 23 0 6 1660 5059 76 18 0 chr1 140909328 140909999 -56285433 - L1_Mus3 LINE L1 -7 6631 5949 6 1660 24 0 0 0 chr1 140910049 140910073 -56285359 + AT_rich Low_complexity Low_complexity 1 24 0 6 1660 375 333 16 8 chr1 140910182 140910306 -56285126 + B4A SINE B4 1 125 -167 6 1660 312 225 22 11 chr1 140910694 140910784 -56284648 - L1MA5 LINE L1 -26 6274 6184 6 1660 1781 214 78 12 chr1 140912314 140912331 -56283101 - Lx2B LINE L1 -17 6983 6968 6 1660 270 0 0 0 chr1 140912331 140912361 -56283071 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 1660 1781 214 78 12 chr1 140912361 140912829 -56282603 - Lx2B LINE L1 -33 6967 6466 6 1660 852 152 109 0 chr1 140913115 140913299 -56282133 - Lx4B LINE L1 -582 6476 6273 6 1660 2692 162 16 0 chr1 140913297 140913796 -56281636 + L1_Mur2 LINE L1 4139 4645 -1232 6 1660 5349 168 55 49 chr1 140913882 140914068 -56281364 - Lx2B LINE L1 -1 6999 6827 6 1660 360 0 0 0 chr1 140914068 140914108 -56281324 + (TGG)n Simple_repeat Simple_repeat 2 41 0 6 1660 5349 168 55 49 chr1 140914108 140915132 -56280300 - Lx2B LINE L1 -174 6826 5781 6 1660 1925 184 69 39 chr1 140915337 140915744 -56279688 - MTC LTR MaLR -2 419 1 6 1660 240 200 13 26 chr1 140915815 140915892 -56279540 + CT-rich Low_complexity Low_complexity 4 79 0 6 1660 293 186 314 0 chr1 140915935 140916021 -56279411 - B1_Mur2 SINE Alu -5 144 32 6 1660 429 125 0 0 chr1 140916031 140916119 -56279313 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1660 624 102 0 0 chr1 140916119 140916217 -56279215 + (GA)n Simple_repeat Simple_repeat 1 98 0 6 1660 385 259 93 36 chr1 140916217 140916228 -56279204 - B4 SINE B4 -75 217 161 6 1660 608 180 17 35 chr1 140916228 140916343 -56279089 - B1_Mur2 SINE Alu -36 113 1 6 1660 385 259 93 36 chr1 140916343 140916357 -56279075 - B4 SINE B4 -75 160 70 6 1660 31 26 0 0 chr1 140916460 140916498 -56278934 + AT_rich Low_complexity Low_complexity 1 38 0 6 1660 1024 258 5 0 chr1 140916903 140917112 -56278320 + B3 SINE B2 4 213 -3 6 1660 244 161 32 0 chr1 140919321 140919383 -56276049 + (TTA)n Simple_repeat Simple_repeat 2 65 0 6 1660 22 0 0 0 chr1 140919555 140919577 -56275855 + AT_rich Low_complexity Low_complexity 1 22 0 6 1660 416 266 0 0 chr1 140919884 140919978 -56275454 - B1_Mur4 SINE Alu -47 103 10 6 1660 515 312 22 26 chr1 140920202 140920475 -56274957 - Lx9 LINE L1 -162 7482 7211 6 1660 182 244 67 79 chr1 140920602 140920691 -56274741 + L2b LINE L2 3286 3373 -2 6 1660 21 57 0 0 chr1 140921939 140921974 -56273458 + AT_rich Low_complexity Low_complexity 1 35 0 6 1660 21 36 0 0 chr1 140922881 140922909 -56272523 + AT_rich Low_complexity Low_complexity 1 28 0 6 1660 246 233 132 8 chr1 140924656 140924777 -56270655 - L1MB1 LINE L1 -21 6168 6033 6 1660 2345 271 135 87 chr1 140925589 140926636 -56268796 - Lx8 LINE L1 -165 7308 6212 6 1660 279 338 26 32 chr1 140927784 140927940 -56267492 + L1MA4A LINE L1 2078 2232 -3648 6 1660 990 269 66 83 chr1 140928250 140928720 -56266712 - Lx9 LINE L1 -171 7473 7012 6 1660 1046 236 26 9 chr1 140928719 140929064 -56266368 - L1_Rod LINE L1 -4317 1530 1183 6 1660 1641 306 101 48 chr1 140929336 140929721 -56265711 + L1MA4A LINE L1 4042 4429 -1451 6 1660 245 255 240 21 chr1 140929721 140929817 -56265615 + PB1D10 SINE Alu 1 117 0 6 1660 207 100 0 0 chr1 140929818 140929848 -56265584 + (CAG)n Simple_repeat Simple_repeat 1 30 0 6 1660 1641 297 91 44 chr1 140929848 140931218 -56264214 + L1MA4A LINE L1 4430 5930 -373 6 1660 789 40 0 0 chr1 140931672 140931773 -56263659 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 1660 1179 252 107 15 chr1 140931797 140932135 -56263297 - MTD LTR MaLR -48 371 3 6 1660 26 0 0 0 chr1 140934326 140934352 -56261080 + AT_rich Low_complexity Low_complexity 1 26 0 6 1660 459 35 0 0 chr1 140934484 140934541 -56260891 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1660 459 0 0 0 chr1 140935488 140935539 -56259893 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1660 21 0 0 0 chr1 140937647 140937668 -56257764 + AT_rich Low_complexity Low_complexity 1 21 0 7 1660 1205 205 85 74 chr1 140939441 140939805 -56255627 - ORR1D2 LTR MaLR -2 368 1 7 1660 229 219 116 62 chr1 140939852 140939870 -56255562 - YREP_Mm Unknown Unknown -1472 340 317 7 1660 393 289 39 2 chr1 140939870 140939985 -56255447 + B1F SINE Alu 1 117 -3 7 1660 22 35 0 0 chr1 140940453 140940482 -56254950 + AT_rich Low_complexity Low_complexity 1 29 0 7 1660 240 310 10 20 chr1 140941241 140941343 -56254089 + PB1D10 SINE Alu 2 102 -15 7 1660 24 0 0 0 chr1 140941626 140941650 -56253782 + AT_rich Low_complexity Low_complexity 1 24 0 7 1660 366 23 0 0 chr1 140941679 140941722 -56253710 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1660 363 228 0 80 chr1 140942212 140942312 -56253120 - Lx8 LINE L1 -1085 6388 6297 7 1660 302 303 90 8 chr1 140942395 140942528 -56252904 - Lx7 LINE L1 -1452 6244 6101 7 1660 368 319 24 12 chr1 140942609 140942774 -56252658 - Lx9 LINE L1 -1682 5962 5796 7 1660 1624 323 51 43 chr1 140942888 140943707 -56251725 + Lx8 LINE L1 6643 7468 -5 7 1660 839 181 13 122 chr1 140943736 140944038 -56251394 + Lx9 LINE L1 7370 7638 -6 7 1660 189 0 0 0 chr1 140944871 140944892 -56250540 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1660 21 36 0 0 chr1 140945213 140945241 -56250191 + AT_rich Low_complexity Low_complexity 1 28 0 7 1660 24 53 0 0 chr1 140946352 140946390 -56249042 + AT_rich Low_complexity Low_complexity 1 38 0 7 1660 263 309 84 151 chr1 140946569 140946901 -56248531 - MER102c DNA MER1_type -21 310 1 7 1660 414 208 55 50 chr1 140947435 140947617 -56247815 + RMER17C LTR ERVK 95 277 -133 7 1660 331 293 101 0 chr1 140947726 140947825 -56247607 + PB1D10 SINE Alu 2 110 -7 7 1660 3150 202 118 50 chr1 140947996 140948902 -56246530 - Lx7 LINE L1 -708 6752 5787 7 1660 3624 164 63 30 chr1 140948899 140949629 -56245803 - L1_Mur3 LINE L1 -266 5614 4861 7 1660 975 130 6 17 chr1 140950222 140950402 -56245030 + CT-rich Low_complexity Low_complexity 2 179 0 7 1660 220 71 0 0 chr1 140950405 140950433 -56244999 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1660 1195 34 0 7 chr1 140950435 140950582 -56244850 - B1_Mus1 SINE Alu -1 147 2 7 1660 258 296 5 47 chr1 140950935 140951056 -56244376 - L1M4 LINE L1 -543 5640 5524 7 1660 265 256 37 0 chr1 140951342 140951424 -56244008 + (CATA)n Simple_repeat Simple_repeat 2 86 0 7 1660 195 139 0 0 chr1 140952306 140952342 -56243090 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 7 1660 2329 231 29 15 chr1 140952459 140953045 -56242387 - Lx7 LINE L1 -375 7321 6728 7 1660 1477 51 25 10 chr1 140953646 140953844 -56241588 - L1_Mus1 LINE L1 0 6567 6367 7 1660 538 331 42 16 chr1 140954257 140954450 -56240982 + B3A SINE B2 1 198 0 7 1660 660 287 88 52 chr1 140954641 140955221 -56240211 - L1MA4 LINE L1 -399 5901 5299 7 1660 233 266 149 0 chr1 140957663 140957757 -56237675 - B4 SINE B4 -4 288 181 7 1660 414 246 2 9 chr1 140957771 140957881 -56237551 - B4A SINE B4 -186 106 1 7 1660 311 0 0 25 chr1 140958252 140958292 -56237140 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1660 267 133 0 0 chr1 140958292 140958337 -56237095 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 7 1660 363 267 95 0 chr1 140958381 140958486 -56236946 - RSINE1 SINE B4 -36 129 15 7 1660 22 0 0 0 chr1 140958571 140958593 -56236839 + AT_rich Low_complexity Low_complexity 1 22 0 7 1660 4312 90 13 8 chr1 140960382 140961012 -56234420 - Lx2 LINE L1 -750 6247 5615 7 1660 2021 84 136 3 chr1 140961012 140961322 -56234110 + Lx2 LINE L1 6643 6993 -4 7 1660 195 100 0 0 chr1 140961322 140961352 -56234080 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1660 469 204 28 55 chr1 140961462 140961571 -56233861 + B3A SINE B2 4 109 -89 7 1660 212 213 16 0 chr1 140964971 140965032 -56230400 + GA-rich Low_complexity Low_complexity 1 62 0 7 1660 362 144 56 0 chr1 140965368 140965458 -56229974 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 7 1660 1025 238 32 28 chr1 140966152 140966332 -56229100 - Lx9 LINE L1 -1804 5840 5663 7 1660 300 53 0 0 chr1 140966332 140966370 -56229062 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1660 1025 231 35 23 chr1 140966370 140966511 -56228921 - Lx9 LINE L1 -745 5699 5552 7 1660 721 108 333 14 chr1 140966829 140966970 -56228462 - B2_Mm2 SINE B2 -9 186 1 7 1660 690 244 292 0 chr1 140967689 140967939 -56227493 + MTD LTR MaLR 52 374 -45 7 1660 455 89 0 48 chr1 140968089 140968172 -56227260 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1660 403 284 69 0 chr1 140968172 140968288 -56227144 - RSINE1 SINE B4 -41 124 1 7 1660 757 335 21 21 chr1 140968399 140968689 -56226743 + B4A SINE B4 2 291 -1 7 1660 1107 300 16 13 chr1 140968880 140969187 -56226245 - Lx6 LINE L1 -190 7270 6963 7 1660 180 0 0 0 chr1 140969262 140969282 -56226150 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1660 3453 23 2 0 chr1 140969521 140969916 -56225516 - MTA_Mm LTR MaLR 0 396 1 7 1660 185 59 0 56 chr1 140970113 140970149 -56225283 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1660 2115 129 44 0 chr1 140970892 140971234 -56224198 + ORR1B1 LTR MaLR 1 357 -37 7 1660 485 155 322 7 chr1 140971245 140971388 -56224044 + Lx4B LINE L1 6866 7053 -5 7 1660 2914 128 26 30 chr1 140971388 140971887 -56223545 - Lx LINE L1 -7 6647 6151 7 1660 372 38 57 0 chr1 140971931 140971984 -56223448 + ORR1B2 LTR MaLR 312 367 0 7 1660 445 293 36 100 chr1 140971992 140972212 -56223220 + MLT1A1 LTR MaLR 198 403 -5 7 1660 1629 252 143 54 chr1 140972294 140972733 -56222699 - L1MC LINE L1 -744 5589 5168 7 1660 353 228 25 25 chr1 140972733 140972814 -56222618 - ID4 SINE ID -2 81 1 7 1660 1629 254 90 77 chr1 140972814 140973521 -56221911 - L1MC LINE L1 -979 5167 4405 7 1660 364 250 128 8 chr1 140973621 140973746 -56221686 + L1MC1 LINE L1 6160 6299 -34 7 1660 213 291 164 10 chr1 140974782 140974886 -56220546 + L2a LINE L2 3296 3415 -11 7 1660 441 54 0 0 chr1 140978674 140978730 -56216702 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1660 186 250 0 0 chr1 140980214 140980270 -56215162 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 7 1660 22 0 0 0 chr1 140983154 140983176 -56212256 + AT_rich Low_complexity Low_complexity 1 22 0 7 1660 31 44 0 0 chr1 140984086 140984131 -56211301 + AT_rich Low_complexity Low_complexity 1 45 0 7 1660 640 222 105 6 chr1 140984363 140984535 -56210897 + B3A SINE B2 1 189 -9 7 1660 30 45 0 0 chr1 140985437 140985481 -56209951 + AT_rich Low_complexity Low_complexity 1 44 0 7 1660 42 71 0 0 chr1 140985778 140985862 -56209570 + AT_rich Low_complexity Low_complexity 1 84 0 7 1660 32 26 0 0 chr1 140986587 140986626 -56208806 + AT_rich Low_complexity Low_complexity 1 39 0 7 1660 589 127 27 0 chr1 140989808 140989918 -56205514 + GA-rich Low_complexity Low_complexity 4 116 0 7 1660 32 26 0 0 chr1 140990318 140990357 -56205075 + AT_rich Low_complexity Low_complexity 1 39 0 7 1660 26 50 0 0 chr1 140991287 140991327 -56204105 + AT_rich Low_complexity Low_complexity 1 40 0 7 1660 193 300 60 48 chr1 140992700 140992784 -56202648 - L2b LINE L2 0 3375 3291 7 1660 894 204 97 0 chr1 140993281 140993507 -56201925 + Lx9 LINE L1 7389 7636 -8 7 1660 22 0 0 0 chr1 140993516 140993538 -56201894 + AT_rich Low_complexity Low_complexity 1 22 0 7 1660 1815 226 119 0 chr1 140994005 140994482 -56200950 - Lx9 LINE L1 -151 7493 6960 7 1660 258 197 49 0 chr1 140994565 140994626 -56200806 - Lx9 LINE L1 -876 6768 6705 7 1660 330 270 55 30 chr1 140995852 140996016 -56199416 - MER33 DNA MER1_type -1 323 156 7 1660 22 35 0 0 chr1 140997318 140997347 -56198085 + AT_rich Low_complexity Low_complexity 1 29 0 7 1660 436 274 17 25 chr1 140999341 140999461 -56195971 - RSINE1 SINE B4 -19 146 28 7 1660 637 93 9 9 chr1 140999717 140999825 -56195607 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 7 1660 810 239 30 10 chr1 141000388 141000591 -56194841 - ORR1D1 LTR MaLR -167 207 1 1 1660 4941 205 65 81 chr1 141000594 141001983 -56193449 - ORR1D1-int LTR MaLR -3 1367 1 1 1660 254 184 47 116 chr1 141002044 141002130 -56193302 - ORR1D1 LTR MaLR -147 237 158 1 1660 566 239 21 28 chr1 141002362 141002504 -56192928 + B1F1 SINE Alu 1 141 -8 2 1660 649 295 50 14 chr1 141002530 141002750 -56192682 + MTEa LTR MaLR 6 233 -146 3 1660 767 324 8 19 chr1 141002771 141003032 -56192400 + Lx8 LINE L1 7072 7329 -144 4 1660 983 314 56 12 chr1 141003221 141003544 -56191888 + MTE-int LTR MaLR 7 343 -1237 5 1660 462 243 179 0 chr1 141003545 141003685 -56191747 + MTE-int LTR MaLR 1277 1441 -139 5 1660 342 136 48 19 chr1 141003962 141004067 -56191365 + CT-rich Low_complexity Low_complexity 3 110 0 6 1660 265 269 93 0 chr1 141004088 141004196 -56191236 - Lx7 LINE L1 -16 7680 7563 7 1660 1029 264 87 27 chr1 141004202 141004572 -56190860 - Lx7 LINE L1 -280 7416 7025 7 1660 261 338 113 20 chr1 141004576 141004727 -56190705 + MTEa LTR MaLR 207 371 -8 3 1660 668 304 72 57 chr1 141004783 141005183 -56190249 - MTE-int LTR MaLR -439 1141 688 8 1660 180 0 0 0 chr1 141005183 141005203 -56190229 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1660 668 306 79 82 chr1 141005203 141005228 -56190204 - MTE-int LTR MaLR -893 687 674 8 1660 209 208 0 0 chr1 141005508 141005556 -56189876 + T-rich Low_complexity Low_complexity 1 48 0 1 1660 316 213 32 136 chr1 141005842 141005896 -56189536 - B4A SINE B4 -95 197 86 1 1660 380 152 0 70 chr1 141005896 141005967 -56189465 - B1_Mur4 SINE Alu -84 66 1 1 1660 21 57 0 0 chr1 141005969 141006004 -56189428 + AT_rich Low_complexity Low_complexity 1 35 0 1 1660 571 250 120 63 chr1 141006535 141006752 -56188680 + B3 SINE B2 9 216 0 1 1660 234 0 0 0 chr1 141007150 141007176 -56188256 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1660 618 167 148 29 chr1 141007323 141007533 -56187899 + Lx9 LINE L1 7403 7637 -7 1 1660 739 178 7 22 chr1 141007789 141007927 -56187505 - B1_Mur1 SINE Alu 0 149 14 1 1660 202 125 42 0 chr1 141007933 141007981 -56187451 + T-rich Low_complexity Low_complexity 6 55 0 1 1660 278 274 27 0 chr1 141008056 141008129 -56187303 - B3A SINE B2 -121 77 3 1 1660 465 103 0 0 chr1 141008686 141008754 -56186678 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1660 307 250 15 0 chr1 141008803 141008871 -56186561 + RSINE1 SINE B4 3 71 -94 2 1660 470 235 144 22 chr1 141009275 141009414 -56186018 - B3 SINE B2 -53 163 8 2 1660 1819 182 71 8 chr1 141009641 141010035 -56185397 + MTD LTR MaLR 1 419 0 2 1660 21 0 0 0 chr1 141010064 141010085 -56185347 + AT_rich Low_complexity Low_complexity 1 21 0 2 1660 221 244 83 62 chr1 141010548 141010644 -56184788 + MIR3 SINE MIR 108 205 -3 2 1660 2478 244 94 20 chr1 141012250 141013056 -56182376 - Lx6 LINE L1 -1008 6452 5587 2 1660 36215 31 0 0 chr1 141013090 141019355 -56176077 - L1Md_T LINE L1 0 6585 221 2 1660 13397 177 27 47 chr1 141019355 141020672 -56174760 - Lx6 LINE L1 -307 5573 4290 2 1660 188 34 0 33 chr1 141020672 141020702 -56174730 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 1660 13397 177 27 47 chr1 141020702 141022631 -56172801 - Lx6 LINE L1 -1591 4289 2392 2 1660 193 343 43 29 chr1 141024423 141024492 -56170940 - MER5A DNA MER1_type -24 165 96 2 1660 291 328 78 0 chr1 141025126 141025242 -56170190 - L2 LINE L2 -974 2445 2321 3 1660 202 244 33 89 chr1 141025588 141025678 -56169754 - L2 LINE L2 -1904 1515 1431 3 1660 200 31 0 59 chr1 141025870 141025904 -56169528 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 3 1660 830 136 142 0 chr1 141025904 141026059 -56169373 - ORR1C2 LTR MaLR -207 177 1 3 1660 283 192 0 37 chr1 141026504 141026585 -56168847 - Lx9 LINE L1 -36 7608 7531 3 1660 441 0 0 0 chr1 141027051 141027100 -56168332 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1660 26 0 0 0 chr1 141027157 141027183 -56168249 + AT_rich Low_complexity Low_complexity 1 26 0 3 1660 225 83 0 0 chr1 141027470 141027506 -56167926 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1660 2700 240 39 15 chr1 141028613 141029401 -56166031 - Lx9 LINE L1 -280 7364 6558 3 1660 234 0 0 0 chr1 141029407 141029433 -56165999 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1660 562 175 112 6 chr1 141029479 141029640 -56165792 - Lx5 LINE L1 0 7050 6873 3 1660 423 272 44 0 chr1 141029649 141029785 -56165647 - Lx9 LINE L1 -1077 6567 6426 3 1660 1095 83 0 27 chr1 141029788 141029936 -56165496 + B1_Mus2 SINE Alu 4 147 0 3 1660 249 159 0 0 chr1 141029936 141029980 -56165452 + A-rich Low_complexity Low_complexity 1 44 0 4 1660 21 0 0 0 chr1 141032703 141032724 -56162708 + AT_rich Low_complexity Low_complexity 1 21 0 4 1660 180 0 0 0 chr1 141032894 141032914 -56162518 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1660 26 0 0 0 chr1 141032959 141032985 -56162447 + AT_rich Low_complexity Low_complexity 1 26 0 4 1661 247 272 103 26 chr1 141033896 141034013 -56161419 + ID_B1 SINE B4 92 217 -7 4 1661 25 0 0 0 chr1 141034014 141034039 -56161393 + AT_rich Low_complexity Low_complexity 1 25 0 4 1661 220 194 0 0 chr1 141034302 141034338 -56161094 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1661 538 292 15 0 chr1 141034338 141034468 -56160964 - RSINE1 SINE B4 0 165 34 4 1661 675 245 50 30 chr1 141034748 141034950 -56160482 - B3 SINE B2 -7 209 4 4 1661 328 251 22 45 chr1 141035091 141035251 -56160181 - B4 SINE B4 -22 270 82 4 1661 1155 229 142 3 chr1 141036284 141036608 -56158824 + MTD LTR MaLR 50 418 -1 5 1661 26 50 0 0 chr1 141036877 141036917 -56158515 + AT_rich Low_complexity Low_complexity 1 40 0 5 1661 396 0 0 0 chr1 141037148 141037192 -56158240 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1661 475 289 127 40 chr1 141037291 141037716 -56157716 - Lx9 LINE L1 -44 7600 7139 5 1661 530 304 30 82 chr1 141037753 141038058 -56157374 - B4 SINE B4 0 292 4 5 1661 188 208 0 49 chr1 141038673 141038728 -56156704 + CT-rich Low_complexity Low_complexity 23 77 0 5 1661 2902 42 8 3 chr1 141038728 141039088 -56156344 - L1Md_F2 LINE L1 0 6582 6221 5 1661 188 208 0 49 chr1 141039088 141039113 -56156319 + polypyrimidine Low_complexity Low_complexity 1 22 0 5 1661 1143 44 0 0 chr1 141040067 141040202 -56155230 + B1_Mus1 SINE Alu 1 135 -13 5 1661 23 0 0 0 chr1 141040291 141040314 -56155118 + AT_rich Low_complexity Low_complexity 1 23 0 5 1661 616 323 79 4 chr1 141041815 141042042 -56153390 - Tigger5 DNA MER2_type -2162 244 1 6 1661 489 34 0 0 chr1 141042368 141042427 -56153005 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 6 1661 792 277 92 43 chr1 141042427 141042732 -56152700 - MTE2b LTR MaLR -55 324 5 6 1661 4413 284 86 16 chr1 141042736 141044195 -56151237 - MTE2b-int LTR MaLR 0 1580 20 6 1661 693 118 0 0 chr1 141044239 141044349 -56151083 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 6 1661 759 268 89 29 chr1 141044355 141044635 -56150797 - MTEa LTR MaLR -65 314 18 6 1661 327 300 9 9 chr1 141044681 141044792 -56150640 - MLT1A1 LTR MaLR 0 408 298 6 1661 370 257 219 15 chr1 141044963 141045231 -56150201 - MTD LTR MaLR -59 360 38 6 1661 310 143 28 28 chr1 141045272 141045344 -56150088 + GA-rich Low_complexity Low_complexity 3 74 0 6 1661 9204 138 81 4 chr1 141045344 141047214 -56148218 - L1VL4 LINE L1 -2693 3190 1187 6 1661 1159 68 0 0 chr1 141047214 141047361 -56148071 - B1_Mm SINE Alu 0 147 1 6 1661 4692 82 41 37 chr1 141047361 141047973 -56147459 - L1VL4 LINE L1 -5471 1186 561 6 1661 410 0 0 20 chr1 141050141 141050192 -56145240 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1661 201 182 0 0 chr1 141050828 141050861 -56144571 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 1661 351 136 0 0 chr1 141050861 141050920 -56144512 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1661 4134 46 0 0 chr1 141051325 141051822 -56143610 + L1Md_T LINE L1 6086 6582 0 7 1661 220 326 0 0 chr1 141051827 141051876 -56143556 + PB1D10 SINE Alu 53 101 -16 7 1661 1702 205 168 39 chr1 141052160 141052748 -56142684 - Lx9 LINE L1 -183 7461 6798 7 1661 25 0 0 0 chr1 141053334 141053359 -56142073 + AT_rich Low_complexity Low_complexity 1 25 0 7 1661 243 88 0 0 chr1 141053724 141053758 -56141674 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1661 393 22 0 0 chr1 141054361 141054407 -56141025 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 7 1661 263 146 18 0 chr1 141054963 141055018 -56140414 + GA-rich Low_complexity Low_complexity 2 57 0 7 1661 329 292 31 10 chr1 141055033 141055130 -56140302 + HAL1-3A_ME LINE L1 2284 2382 -476 8 1661 311 264 58 83 chr1 141055612 141055732 -56139700 - L1MCc LINE L1 -5305 1118 1002 8 1661 374 329 75 69 chr1 141055832 141056181 -56139251 - ORR1E LTR MaLR -1 358 8 8 1661 333 211 57 19 chr1 141056648 141056754 -56138678 - L1MCc LINE L1 -6313 110 1 8 1661 600 264 13 0 chr1 141056823 141056982 -56138450 - B3 SINE B2 -24 192 32 8 1661 524 211 222 6 chr1 141057887 141058054 -56137378 + B3 SINE B2 1 203 -13 8 1661 180 0 0 0 chr1 141058055 141058075 -56137357 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1661 432 0 0 0 chr1 141058119 141058167 -56137265 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1661 327 232 72 12 chr1 141058167 141058250 -56137182 + PB1D10 SINE Alu 23 110 -7 8 1661 513 315 74 26 chr1 141058935 141059124 -56136308 - B3A SINE B2 0 198 1 8 1661 196 323 121 0 chr1 141059880 141059979 -56135453 + L2a LINE L2 3278 3388 -38 8 1661 2538 145 15 2 chr1 141060070 141060478 -56134954 + MTC LTR MaLR 1 413 -8 9 1661 983 186 308 12 chr1 141060599 141060927 -56134505 - MTD LTR MaLR -14 405 1 9 1661 282 73 0 0 chr1 141061721 141061762 -56133670 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 1661 288 259 28 56 chr1 141062539 141062682 -56132750 + L1MC5 LINE L1 6882 7020 -941 9 1661 51 0 0 0 chr1 141062758 141062809 -56132623 + AT_rich Low_complexity Low_complexity 1 51 0 9 1661 679 239 76 13 chr1 141063266 141063423 -56132009 + B3 SINE B2 1 167 -49 9 1661 516 45 0 0 chr1 141063423 141063490 -56131942 + (CATA)n Simple_repeat Simple_repeat 4 70 0 9 1661 580 253 85 32 chr1 141063490 141063520 -56131912 + B3A SINE B2 170 197 -1 9 1661 752 281 0 0 chr1 141063539 141063692 -56131740 + RSINE1 SINE B4 3 155 -10 9 1661 278 328 32 48 chr1 141063796 141063921 -56131511 + MER5A1 DNA MER1_type 2 124 -42 9 1661 204 40 0 0 chr1 141064290 141064315 -56131117 + (ATG)n Simple_repeat Simple_repeat 3 27 0 9 1661 328 279 24 60 chr1 141065046 141065214 -56130218 + CT-rich Low_complexity Low_complexity 4 165 0 1 1661 382 237 40 40 chr1 141065214 141065315 -56130117 - PB1D7 SINE Alu -19 101 1 1 1661 801 281 147 16 chr1 141067720 141068204 -56127228 - L1MC3 LINE L1 0 7785 7239 1 1661 773 255 92 0 chr1 141068718 141068902 -56126530 + Lx9 LINE L1 6474 6674 -970 1 1661 292 22 22 22 chr1 141070280 141070326 -56125106 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 1661 186 103 0 0 chr1 141072377 141072406 -56123026 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1661 462 278 77 91 chr1 141072798 141073083 -56122349 - ORR1E LTR MaLR 0 359 79 1 1661 1097 249 118 46 chr1 141074175 141074521 -56120911 + MTE2a LTR MaLR 1 371 -8 1 1661 1187 68 0 6 chr1 141075503 141075666 -56119766 + (GAA)n Simple_repeat Simple_repeat 1 162 0 1 1661 330 211 0 0 chr1 141075951 141076024 -56119408 - B1F SINE Alu -44 73 1 1 1661 300 310 0 0 chr1 141076024 141076038 -56119394 - ID_B1 SINE B4 -70 154 68 1 1661 297 269 9 103 chr1 141076088 141076204 -56119228 - Lx7 LINE L1 -1099 6597 6493 1 1661 279 239 0 0 chr1 141076206 141076252 -56119180 - RSINE1 SINE B4 -115 50 5 1 1661 1287 289 80 14 chr1 141076372 141076885 -56118547 - Lx7 LINE L1 -1250 6446 5900 1 1661 478 357 68 112 chr1 141076951 141077685 -56117747 - L1MEc LINE L1 -2154 4165 3449 1 1661 468 0 0 0 chr1 141077685 141077737 -56117695 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1661 243 303 271 0 chr1 141077745 141077867 -56117565 - RSINE1 SINE B4 -8 157 3 1 1661 478 357 68 112 chr1 141077867 141078023 -56117409 - L1MEc LINE L1 -2875 3444 3306 1 1661 322 257 0 14 chr1 141078100 141078171 -56117261 - 5S rRNA rRNA -48 73 4 1 1661 354 311 39 0 chr1 141078643 141078746 -56116686 - PB1 SINE Alu -20 107 1 1 1661 260 353 31 43 chr1 141078746 141079137 -56116295 - L1MEc LINE L1 -3532 2787 2402 1 1661 247 315 66 84 chr1 141079177 141079332 -56116100 - Lx9 LINE L1 -27 7617 7458 1 1661 2874 81 8 3 chr1 141079332 141079704 -56115728 - L1_Mus3 LINE L1 -6 6632 6259 1 1661 247 315 66 84 chr1 141079704 141079822 -56115610 - Lx9 LINE L1 -187 7457 7349 1 1661 1450 301 53 44 chr1 141079839 141080387 -56115045 - Lx9 LINE L1 -517 7127 6575 1 1661 405 58 0 0 chr1 141080388 141080440 -56114992 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1661 198 0 0 0 chr1 141080461 141080483 -56114949 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1661 2612 135 22 3 chr1 141080586 141080957 -56114475 + ORR1C1 LTR MaLR 1 378 0 1 1661 1337 264 164 28 chr1 141081275 141081878 -56113554 - Lx9 LINE L1 -46 7598 6914 1 1661 726 258 36 5 chr1 141081892 141082087 -56113345 + Lx9 LINE L1 6742 6942 -702 1 1661 252 228 12 48 chr1 141082062 141082145 -56113287 - L1MEc LINE L1 -4239 2161 2082 1 1661 1774 207 35 24 chr1 141083795 141084167 -56111265 + Lx7 LINE L1 6671 7046 -650 1 1661 1077 264 33 30 chr1 141084168 141084504 -56110928 + Lx7 LINE L1 7151 7487 -209 1 1661 231 167 122 27 chr1 141084516 141084590 -56110842 + Lx7 LINE L1 7615 7695 -1 1 1661 503 246 146 0 chr1 141085331 141085461 -56109971 + B1_Mur1 SINE Alu 1 149 0 1 1661 321 339 16 39 chr1 141085747 141085876 -56109556 - MTEa LTR MaLR 0 379 254 1 1661 522 154 0 55 chr1 141085951 141086061 -56109371 + Lx2B LINE L1 6862 6965 -35 1 1661 1954 319 97 53 chr1 141086369 141086892 -56108540 - Lx8 LINE L1 -214 7259 6711 1 1661 219 36 0 0 chr1 141086892 141086920 -56108512 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1661 1954 319 97 53 chr1 141086920 141087506 -56107926 - Lx8 LINE L1 -763 6710 6101 1 1661 234 180 0 0 chr1 141087846 141087896 -56107536 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1661 22 35 0 0 chr1 141087976 141088005 -56107427 + AT_rich Low_complexity Low_complexity 1 29 0 1 1661 1081 331 58 18 chr1 141088064 141088685 -56106747 + L1MA5A LINE L1 5272 5917 -380 1 1661 686 300 47 18 chr1 141089814 141090153 -56105279 + L1M2 LINE L1 5051 5399 -744 1 1661 232 245 34 136 chr1 141091348 141091466 -56103966 - MLT1H1 LTR MaLR -380 175 70 1 1661 547 76 79 56 chr1 141091536 141091662 -56103770 + L1_Mus3 LINE L1 6506 6634 -4 1 1661 402 57 0 0 chr1 141091963 141092016 -56103416 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1661 3277 49 201 5 chr1 141092328 141092756 -56102676 + RLTR1B LTR ERV1 1 512 0 1 1661 290 26 26 0 chr1 141093068 141093107 -56102325 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1661 181 0 69 0 chr1 141093616 141093645 -56101787 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1661 223 28 56 0 chr1 141094015 141094051 -56101381 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 1661 453 103 0 0 chr1 141094251 141094319 -56101113 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1661 422 346 68 36 chr1 141094344 141094623 -56100809 - B4A SINE B4 -4 288 1 1 1661 244 242 0 61 chr1 141094695 141094761 -56100671 + PB1D9 SINE Alu 57 118 -2 1 1661 540 45 0 0 chr1 141096920 141096987 -56098445 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1661 22 0 0 0 chr1 141098624 141098646 -56096786 + AT_rich Low_complexity Low_complexity 1 22 0 1 1661 4322 98 10 15 chr1 141099003 141099595 -56095837 + L1_Mus4 LINE L1 6045 6633 -3 1 1661 288 0 0 0 chr1 141102119 141102151 -56093281 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1661 495 33 0 0 chr1 141103212 141103273 -56092159 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1661 24 0 0 0 chr1 141103849 141103873 -56091559 + AT_rich Low_complexity Low_complexity 1 24 0 1 1661 273 29 0 0 chr1 141104143 141104177 -56091255 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1661 189 0 0 0 chr1 141104524 141104545 -56090887 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1661 259 257 200 0 chr1 141108928 141108998 -56086434 - PB1D10 SINE Alu -21 96 13 1 1661 273 319 51 41 chr1 141110795 141110893 -56084539 + MLT1A0 LTR MaLR 1 99 -266 1 1661 345 323 60 72 chr1 141110919 141111086 -56084346 + MLT1A0 LTR MaLR 169 333 -32 1 1661 360 0 0 0 chr1 141111112 141111152 -56084280 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1 1661 911 229 55 0 chr1 141111156 141111339 -56084093 - B3 SINE B2 -20 196 4 1 1661 189 0 0 0 chr1 141111381 141111402 -56084030 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1661 496 312 46 21 chr1 141114031 141114313 -56081119 - B4A SINE B4 -2 290 2 1 1661 368 306 133 30 chr1 141115134 141115299 -56080133 - B3A SINE B2 -16 182 1 1 1661 1017 59 88 0 chr1 141115357 141115493 -56079939 - B1_Mus1 SINE Alu 0 148 1 1 1661 2365 296 45 34 chr1 141115644 141116545 -56078887 + Lx8 LINE L1 6309 7219 -254 1 1661 231 319 76 11 chr1 141116561 141116653 -56078779 + RMER15 LTR ERVL 371 468 -107 1 1661 507 323 8 0 chr1 141116975 141117099 -56078333 + RSINE1 SINE B4 3 127 -38 1 1661 1664 326 40 15 chr1 141117102 141117824 -56077608 + Lx8 LINE L1 6672 7411 -62 1 1661 674 229 79 19 chr1 141117877 141118091 -56077341 - L1M3 LINE L1 -602 5566 5340 1 1661 392 301 5 128 chr1 141119304 141119491 -56075941 + ID_B1 SINE B4 61 224 0 1 1661 473 206 31 10 chr1 141119394 141119492 -56075940 + B1F SINE Alu 50 149 0 1 1661 435 68 0 0 chr1 141119907 141119966 -56075466 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1661 469 312 83 0 chr1 141119969 141120126 -56075306 - B3A SINE B2 -26 172 3 1 1661 186 345 92 0 chr1 141120147 141120234 -56075198 + MIR3 SINE MIR 91 185 -23 1 1661 328 355 57 93 chr1 141121955 141122309 -56073123 + L1MEf LINE L1 478 818 -5382 1 1661 2640 133 53 0 chr1 141123429 141123864 -56071568 + Lx2A1 LINE L1 6545 7002 -6 1 1661 240 200 0 0 chr1 141124169 141124219 -56071213 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1661 27 0 0 0 chr1 141124243 141124270 -56071162 + AT_rich Low_complexity Low_complexity 1 27 0 1 1661 242 352 81 94 chr1 141124559 141125130 -56070302 + L2b LINE L2 2757 3373 -2 1 1661 600 14 0 0 chr1 141125491 141125560 -56069872 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1661 291 85 0 0 chr1 141125967 141126014 -56069418 + (TGG)n Simple_repeat Simple_repeat 1 47 0 1 1661 711 165 0 24 chr1 141127575 141127699 -56067733 + B2_Mm2 SINE B2 17 137 -58 1 1661 1176 189 9 22 chr1 141127774 141128001 -56067431 + URR1B DNA MER1_type 2 225 0 1 1661 336 48 0 0 chr1 141128856 141128898 -56066534 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1661 437 270 35 28 chr1 141129684 141129825 -56065607 + B1F2 SINE Alu 3 144 -5 1 1661 366 23 0 0 chr1 141130530 141130573 -56064859 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1661 261 0 0 0 chr1 141132168 141132197 -56063235 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1661 432 0 0 0 chr1 141132197 141132244 -56063188 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1661 1964 126 3 25 chr1 141134902 141135220 -56060212 - RLTR10E LTR ERVK 0 311 1 1 1661 644 312 127 63 chr1 141135339 141135876 -56059556 + L2a LINE L2 1508 2078 -1341 1 1661 189 317 211 36 chr1 141136164 141136468 -56058964 + L2a LINE L2 3066 3422 -4 1 1661 209 286 0 0 chr1 141138087 141138136 -56057296 + GA-rich Low_complexity Low_complexity 3 51 0 1 1661 222 295 13 13 chr1 141138483 141138562 -56056870 - ID2 SINE ID -1 82 4 1 1661 392 250 0 72 chr1 141139291 141139416 -56056016 + PB1D10 SINE Alu 1 116 -1 1 1661 207 0 0 0 chr1 141139421 141139444 -56055988 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1661 217 352 49 0 chr1 141140615 141140737 -56054695 - L2 LINE L2 -1302 2117 1990 1 1661 22 35 0 0 chr1 141142170 141142199 -56053233 + AT_rich Low_complexity Low_complexity 1 29 0 1 1661 1159 157 13 48 chr1 141142234 141142462 -56052970 + URR1B DNA MER1_type 6 225 0 1 1661 633 274 56 0 chr1 141142711 141142890 -56052542 + B3A SINE B2 2 190 -8 1 1661 1835 45 0 0 chr1 141146024 141146246 -56049186 + L1_Mus1 LINE L1 6346 6567 0 1 1661 1413 235 158 14 chr1 141146618 141146984 -56048448 + MTD LTR MaLR 1 419 0 1 1661 42 20 0 0 chr1 141147318 141147367 -56048065 + AT_rich Low_complexity Low_complexity 1 49 0 1 1661 212 273 90 1 chr1 141147497 141147602 -56047830 + MIRc SINE MIR 82 200 -76 1 1661 214 299 82 0 chr1 141147842 141147922 -56047510 + L2c LINE L2 3279 3391 -35 1 1661 297 0 0 0 chr1 141148708 141148741 -56046691 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1661 6088 36 1 0 chr1 141149531 141150309 -56045123 + L1Md_T LINE L1 5854 6582 0 2 1661 246 324 0 0 chr1 141150310 141150378 -56045054 + B4A SINE B4 223 290 -2 2 1661 616 179 56 0 chr1 141150400 141150562 -56044870 + Lx2 LINE L1 6057 6227 -770 2 1661 306 0 0 0 chr1 141150562 141150596 -56044836 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1661 563 220 17 8 chr1 141151175 141151294 -56044138 + B3 SINE B2 97 216 0 2 1661 180 0 0 0 chr1 141151310 141151330 -56044102 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1661 319 284 21 21 chr1 141151696 141151793 -56043639 + PB1D10 SINE Alu 3 99 -18 2 1661 299 208 0 27 chr1 141152640 141152714 -56042718 - PB1D10 SINE Alu -12 105 34 2 1661 613 179 47 67 chr1 141152782 141152932 -56042500 + B1_Mm SINE Alu 1 147 0 2 1661 264 333 53 65 chr1 141152805 141152975 -56042457 + B4A SINE B4 102 269 -23 2 1661 265 19 93 0 chr1 141153232 141153286 -56042146 + (CATAT)n Simple_repeat Simple_repeat 2 60 0 2 1661 300 27 0 0 chr1 141153290 141153327 -56042105 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 2 1661 368 273 136 103 chr1 141154158 141154342 -56041090 + B3A SINE B2 3 192 -6 2 1661 424 271 68 74 chr1 141154408 141154441 -56040991 + RSINE1 SINE B4 4 36 -129 2 1661 1664 44 0 0 chr1 141154441 141154644 -56040788 + L1Md_T LINE L1 6379 6581 -1 2 1661 424 271 68 74 chr1 141154644 141154773 -56040659 + RSINE1 SINE B4 37 165 0 2 1661 473 0 0 17 chr1 141154779 141154837 -56040595 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 2 1661 695 183 174 13 chr1 141156202 141156357 -56039075 - B3 SINE B2 -1 215 36 2 1661 850 322 16 8 chr1 141157550 141157807 -56037625 + B4A SINE B4 14 272 -20 2 1661 414 0 0 0 chr1 141157861 141157907 -56037525 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1661 426 85 0 0 chr1 141157979 141158038 -56037394 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1661 30 27 0 0 chr1 141161371 141161408 -56034024 + AT_rich Low_complexity Low_complexity 1 37 0 2 1661 265 205 157 0 chr1 141161546 141161629 -56033803 + L1M2 LINE L1 5512 5607 -705 2 1661 494 333 30 30 chr1 141161629 141161793 -56033639 + RSINE1 SINE B4 2 165 0 2 1661 351 338 47 27 chr1 141161994 141162143 -56033289 + MER21B LTR ERV1 709 860 -3 2 1661 213 89 17 35 chr1 141162144 141162181 -56033251 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 2 1661 1186 61 0 0 chr1 141162181 141162328 -56033104 - B1_Mm SINE Alu 0 147 1 2 1661 213 89 17 35 chr1 141162328 141162348 -56033084 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2 1661 864 266 109 31 chr1 141162498 141162956 -56032476 + L1MB2 LINE L1 5677 6170 -1 2 1661 3368 32 15 0 chr1 141163587 141163988 -56031444 - L1Md_F3 LINE L1 0 6584 6178 2 1662 294 317 80 81 chr1 141164937 141165164 -56030268 + MLT1E LTR MaLR 311 620 -33 2 1662 6673 172 38 16 chr1 141165379 141166879 -56028553 + Lx5 LINE L1 5381 6904 -146 2 1662 393 22 0 0 chr1 141166879 141166925 -56028507 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1662 6673 178 38 24 chr1 141166925 141167064 -56028368 + Lx5 LINE L1 6905 7047 -3 2 1662 21 36 0 0 chr1 141168293 141168321 -56027111 + AT_rich Low_complexity Low_complexity 1 28 0 2 1662 254 378 0 0 chr1 141169148 141169259 -56026173 + PB1D10 SINE Alu 1 111 -6 2 1662 285 350 100 0 chr1 141169401 141169561 -56025871 - L2 LINE L2 -1285 2134 1959 2 1662 342 304 121 55 chr1 141169817 141170147 -56025285 - L1ME1 LINE L1 -2159 5883 5520 2 1662 362 21 21 0 chr1 141170569 141170616 -56024816 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1662 533 382 41 35 chr1 141170720 141171010 -56024422 - B4A SINE B4 0 292 1 2 1662 791 211 202 10 chr1 141171045 141171324 -56024108 - ORR1D1 LTR MaLR 0 374 8 2 1662 267 104 0 0 chr1 141172374 141172422 -56023010 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1662 333 0 0 0 chr1 141172426 141172463 -56022969 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1662 424 233 78 0 chr1 141172574 141172754 -56022678 + L1MA6 LINE L1 6106 6299 -1 2 1662 223 304 84 35 chr1 141173147 141173290 -56022142 + MIR SINE MIR 24 173 -89 2 1662 283 289 84 58 chr1 141173650 141173841 -56021591 + B3A SINE B2 1 196 -2 2 1662 1157 81 0 0 chr1 141174078 141174226 -56021206 - B1_Mus1 SINE Alu 0 148 1 2 1662 231 103 0 0 chr1 141174234 141174273 -56021159 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1662 6376 101 30 22 chr1 141174729 141175669 -56019763 - Lx3C LINE L1 0 6976 6030 2 1662 408 40 0 0 chr1 141176985 141177035 -56018397 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1662 422 283 125 0 chr1 141177076 141177260 -56018172 + MER2 DNA MER2_type 46 252 -93 2 1662 296 325 60 17 chr1 141177526 141177642 -56017790 + ID_B1 SINE B4 79 199 -25 2 1662 402 258 85 39 chr1 141177542 141177671 -56017761 + B1F SINE Alu 13 147 -2 2 1662 247 208 18 45 chr1 141177673 141177784 -56017648 + A-rich Low_complexity Low_complexity 2 109 0 2 1662 360 347 69 73 chr1 141179285 141179574 -56015858 + ORR1E LTR MaLR 66 353 -6 2 1662 1584 296 97 74 chr1 141179582 141180254 -56015178 + ORR1E-int LTR MaLR 1 687 -893 2 1662 251 267 0 85 chr1 141180328 141180410 -56015022 + ORR1E-int LTR MaLR 837 911 -669 2 1662 2228 289 63 12 chr1 141180639 141181388 -56014044 - Lx8 LINE L1 -248 7225 6439 2 1662 1387 315 101 18 chr1 141181407 141181950 -56013482 + ORR1E-int LTR MaLR 924 1511 -69 2 1662 354 318 48 54 chr1 141181957 141182143 -56013289 + ORR1E LTR MaLR 5 189 -170 2 1662 829 82 0 48 chr1 141182145 141182311 -56013121 + (TTCTG)n Simple_repeat Simple_repeat 3 160 0 2 1662 388 50 0 155 chr1 141182316 141182439 -56012993 + (CCTAT)n Simple_repeat Simple_repeat 1 104 0 2 1662 219 69 0 0 chr1 141182439 141182468 -56012964 + (TCCTG)n Simple_repeat Simple_repeat 2 30 0 2 1662 388 50 0 155 chr1 141182468 141182557 -56012875 + (CCTAT)n Simple_repeat Simple_repeat 5 80 0 2 1662 251 23 0 151 chr1 141182595 141182801 -56012631 + (CCTAT)n Simple_repeat Simple_repeat 5 179 0 2 1662 272 91 0 22 chr1 141182810 141182855 -56012577 + (CTATT)n Simple_repeat Simple_repeat 1 44 0 2 1662 315 303 18 30 chr1 141182895 141182996 -56012436 + ORR1E LTR MaLR 212 337 -42 2 1662 193 358 12 0 chr1 141183112 141183193 -56012239 - MIR SINE MIR -1 261 180 2 1662 308 309 57 53 chr1 141184963 141185165 -56010267 + MIR SINE MIR 30 216 -52 2 1662 302 384 42 10 chr1 141188708 141188900 -56006532 - AmnSINE1 SINE SINE -76 499 302 2 1662 290 26 0 25 chr1 141189427 141189467 -56005965 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1662 2046 160 52 16 chr1 141189719 141190082 -56005350 + Lx5 LINE L1 6662 7037 -13 2 1662 237 65 0 0 chr1 141190085 141190116 -56005316 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 1662 405 0 0 0 chr1 141190649 141190694 -56004738 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 1662 1796 205 74 7 chr1 141190831 141191277 -56004155 + RCHARR1 DNA MER1_type 497 972 -2 2 1662 726 238 109 0 chr1 141191413 141191606 -56003826 + B3 SINE B2 1 214 -2 2 1662 401 0 20 0 chr1 141192099 141192148 -56003284 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1662 1157 69 0 0 chr1 141192713 141192857 -56002575 - B1_Mm SINE Alu -1 146 3 2 1662 377 133 0 16 chr1 141193518 141193579 -56001853 - RLTR24 LTR ERV1 0 529 470 2 1662 1436 154 23 116 chr1 141193611 141193957 -56001475 - RLTR24 LTR ERV1 -215 314 1 2 1662 534 250 0 9 chr1 141194149 141194262 -56001170 - ID_B1 SINE B4 -3 221 110 2 1662 11153 49 0 17 chr1 141194883 141196391 -55999041 + L1Md_F2 LINE L1 4105 5586 -297 2 1662 8187 36 9 1 chr1 141196391 141197377 -55998055 + L1Md_F2 LINE L1 5587 6580 -2 2 1662 350 280 34 30 chr1 141197449 141197631 -55997801 + L1_Mur3 LINE L1 4662 4843 -1037 2 1662 236 250 0 51 chr1 141197940 141197999 -55997433 - ID4 SINE ID -27 56 1 2 1662 825 254 121 105 chr1 141198638 141199114 -55996318 - RLTR18B LTR ERVK 0 616 120 2 1662 3498 47 43 2 chr1 141199114 141199606 -55995826 + MusHAL1 LINE L1 2198 2709 -3 2 1662 674 310 85 71 chr1 141199678 141200032 -55995400 + ORR1E LTR MaLR 1 359 0 2 1662 268 313 24 0 chr1 141200061 141200144 -55995288 + LTR40c LTR ERVL 368 452 -13 2 1662 211 321 130 79 chr1 141200186 141200357 -55995075 - L2 LINE L2 -1904 1515 1319 2 1662 4630 80 25 15 chr1 141200357 141201005 -55994427 + L1Md_F2 LINE L1 5914 6567 -15 2 1662 211 321 130 79 chr1 141201005 141201017 -55994415 - L2 LINE L2 -2101 1318 1306 2 1662 513 32 0 0 chr1 141201017 141201080 -55994352 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 1662 211 321 130 79 chr1 141201080 141201172 -55994260 - L2 LINE L2 -2114 1305 1225 2 1662 180 0 0 0 chr1 141201351 141201371 -55994061 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1662 4682 83 9 7 chr1 141202017 141202796 -55992636 - L1_Mus3 LINE L1 -280 6286 5543 2 1662 2469 45 6 13 chr1 141202797 141203113 -55992319 + L1_Mus3 LINE L1 6308 6621 -17 2 1662 626 118 0 10 chr1 141203113 141203180 -55992252 + (GGA)n Simple_repeat Simple_repeat 3 69 0 2 1662 1473 39 0 0 chr1 141203180 141203360 -55992072 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1662 626 118 0 10 chr1 141203360 141203395 -55992037 + (GGA)n Simple_repeat Simple_repeat 1 35 0 2 1662 27 0 0 0 chr1 141203635 141203662 -55991770 + AT_rich Low_complexity Low_complexity 1 27 0 2 1662 285 242 0 0 chr1 141204038 141204129 -55991303 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1662 518 292 28 49 chr1 141204284 141204428 -55991004 + B1_Mur1 SINE Alu 3 143 -6 2 1662 404 308 98 0 chr1 141205956 141206099 -55989333 - Lx8 LINE L1 -1124 6349 6193 2 1662 2402 211 258 24 chr1 141206101 141206823 -55988609 - RMER1B Other Other -14 1052 162 2 1662 880 264 53 0 chr1 141206831 141207058 -55988374 - RMER1B Other Other -705 361 123 2 1662 2454 301 60 17 chr1 141207065 141208089 -55987343 + Lx8 LINE L1 6399 7467 -6 2 1662 216 0 0 0 chr1 141208238 141208262 -55987170 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1662 586 301 94 22 chr1 141208682 141209172 -55986260 + L1MD LINE L1 2154 2678 -3468 2 1662 425 299 86 70 chr1 141210063 141210250 -55985182 + RMER2 LTR ERV1 329 518 -49 2 1662 908 225 20 15 chr1 141211752 141211955 -55983477 + MTC LTR MaLR 210 413 -8 2 1662 4282 204 142 43 chr1 141211978 141213094 -55982338 + MTC-int LTR MaLR 1 1226 -32 2 1662 5036 148 112 15 chr1 141213094 141214031 -55981401 + RLTR25B LTR ERVK 1 1028 0 2 1662 231 182 0 22 chr1 141214031 141214069 -55981363 + MTC-int LTR MaLR 1222 1258 0 2 1662 761 231 113 26 chr1 141214104 141214299 -55981133 + MTC LTR MaLR 202 413 -8 2 1662 237 351 91 67 chr1 141215348 141215736 -55979696 + L2c LINE L2 2981 3387 0 3 1662 921 144 0 17 chr1 141216222 141216399 -55979033 + GA-rich Low_complexity Low_complexity 1 174 0 3 1662 182 329 24 73 chr1 141216458 141216540 -55978892 - MIRm SINE MIR -175 101 24 3 1662 222 37 0 0 chr1 141216767 141216794 -55978638 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1662 4930 45 0 2 chr1 141217308 141217905 -55977527 + L1Md_F2 LINE L1 5985 6580 -2 3 1662 189 250 0 51 chr1 141217949 141218008 -55977424 + L2 LINE L2 2782 2837 -582 3 1662 206 367 26 68 chr1 141218273 141218463 -55976969 - MIRb SINE MIR -8 260 79 3 1662 4335 184 30 85 chr1 141220388 141220508 -55974924 - RMER1A Other Other -4 1026 901 3 1662 477 0 0 0 chr1 141220508 141220561 -55974871 + (CCA)n Simple_repeat Simple_repeat 1 53 0 3 1662 4335 215 30 88 chr1 141220561 141221896 -55973536 - RMER1A Other Other -130 900 1 3 1662 253 324 0 14 chr1 141222576 141222648 -55972784 + B4 SINE B4 2 72 -220 3 1662 372 71 0 0 chr1 141222651 141222707 -55972725 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1662 456 99 0 62 chr1 141223007 141223104 -55972328 + L1_Mus3 LINE L1 6520 6610 -28 3 1662 1390 6 0 23 chr1 141223106 141223279 -55972153 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 3 1662 412 227 0 0 chr1 141223735 141223810 -55971622 - ID4_ SINE ID -6 77 3 3 1662 206 329 52 64 chr1 141225717 141225889 -55969543 + L2 LINE L2 2742 2911 -508 3 1662 7188 21 5 0 chr1 141226769 141228195 -55967237 + L1Md_A LINE L1 5049 6485 -97 3 1662 339 25 0 0 chr1 141228250 141228290 -55967142 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1662 3835 37 0 0 chr1 141228335 141228791 -55966641 - L1Md_F2 LINE L1 -3 6579 6124 3 1662 1527 303 30 21 chr1 141228814 141229658 -55965774 + Lx7 LINE L1 5306 6170 -1526 3 1662 852 249 38 92 chr1 141229663 141229924 -55965508 - MTE2b LTR MaLR -115 264 18 3 1662 268 312 141 23 chr1 141229915 141230043 -55965389 + MER5A1 DNA MER1_type 17 159 -7 3 1662 24 96 0 0 chr1 141230269 141230342 -55965090 + AT_rich Low_complexity Low_complexity 1 73 0 3 1662 643 285 116 19 chr1 141230535 141230793 -55964639 - B4A SINE B4 -8 284 2 3 1662 191 375 91 0 chr1 141231672 141231760 -55963672 + MER5B DNA MER1_type 80 175 -3 3 1662 367 312 84 7 chr1 141232199 141232354 -55963078 + Lx7 LINE L1 6923 7089 -384 3 1662 569 246 115 46 chr1 141232563 141232929 -55962503 - L1MA6 LINE L1 -83 6217 5827 3 1662 451 295 140 37 chr1 141232927 141233334 -55962098 + L1MA6 LINE L1 5362 5808 -492 3 1662 620 278 70 49 chr1 141234359 141234643 -55960789 + B4 SINE B4 1 290 -2 3 1662 234 0 0 0 chr1 141234968 141234994 -55960438 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1662 215 258 59 29 chr1 141235299 141235367 -55960065 + ID_B1 SINE B4 67 136 -88 3 1662 353 244 55 55 chr1 141235330 141235413 -55960019 + PB1D10 SINE Alu 19 103 -14 3 1662 185 65 32 0 chr1 141235413 141235444 -55959988 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1662 348 24 0 0 chr1 141236002 141236043 -55959389 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1662 414 85 0 0 chr1 141236090 141236149 -55959283 + (TTTAG)n Simple_repeat Simple_repeat 3 61 0 3 1662 810 170 22 0 chr1 141236149 141236284 -55959148 - B1_Mur2 SINE Alu -11 138 1 3 1662 24 96 0 0 chr1 141237038 141237111 -55958321 + AT_rich Low_complexity Low_complexity 1 73 0 3 1662 1032 108 0 0 chr1 141237299 141237456 -55957976 + (TCCC)n Simple_repeat Simple_repeat 4 160 0 3 1662 222 37 0 0 chr1 141238392 141238419 -55957013 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 3 1662 352 319 68 14 chr1 141239220 141239366 -55956066 + MIR SINE MIR 2 155 -107 3 1662 193 266 83 60 chr1 141239413 141239497 -55955935 + MIR SINE MIR 58 143 -119 3 1662 21 0 0 0 chr1 141240086 141240107 -55955325 + AT_rich Low_complexity Low_complexity 1 21 0 3 1662 1613 36 0 5 chr1 141240444 141240637 -55954795 - B2_Mm1a SINE B2 0 193 2 3 1662 842 289 21 16 chr1 141240831 141241074 -55954358 + Lx8 LINE L1 7054 7297 -176 3 1662 1232 33 29 18 chr1 141241836 141242326 -55953106 + (CA)n Simple_repeat Simple_repeat 1 494 0 3 1662 411 225 241 21 chr1 141242363 141242554 -55952878 - MER33 DNA MER1_type -91 233 1 3 1662 212 314 0 75 chr1 141243084 141243177 -55952255 - B4A SINE B4 -206 86 1 3 1662 456 329 52 7 chr1 141244660 141244813 -55950619 + RSINE1 SINE B4 2 161 -4 3 1662 233 328 102 28 chr1 141244813 141244836 -55950596 + B2_Mm2 SINE B2 1 189 -6 3 1662 1094 57 0 14 chr1 141244919 141245062 -55950370 + B1_Mus1 SINE Alu 2 142 -6 3 1662 212 0 36 0 chr1 141245062 141245090 -55950342 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1662 27 81 0 0 chr1 141245661 141245723 -55949709 + AT_rich Low_complexity Low_complexity 1 62 0 3 1662 225 0 0 0 chr1 141246015 141246040 -55949392 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1662 222 37 0 0 chr1 141246046 141246073 -55949359 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1662 21 0 0 0 chr1 141246728 141246749 -55948683 + AT_rich Low_complexity Low_complexity 1 21 0 3 1662 328 277 11 0 chr1 141247097 141247191 -55948241 - Lx9 LINE L1 -220 7424 7330 3 1662 183 80 0 0 chr1 141248402 141248427 -55947005 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1662 24 32 0 0 chr1 141248551 141248582 -55946850 + AT_rich Low_complexity Low_complexity 1 31 0 3 1662 254 240 0 0 chr1 141248741 141248791 -55946641 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1662 6057 209 15 25 chr1 141248792 141250055 -55945377 + Lx6 LINE L1 6208 7458 -2 3 1662 9689 191 40 132 chr1 141250149 141250365 -55945067 + Lx7 LINE L1 2907 3125 -2755 3 1662 234 0 0 0 chr1 141250365 141250391 -55945041 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1662 9689 191 40 132 chr1 141250391 141251603 -55943829 + Lx7 LINE L1 3126 4411 -1469 3 1662 902 163 14 0 chr1 141251603 141251750 -55943682 - B1_Mur4 SINE Alu 0 150 2 3 1662 9689 200 56 75 chr1 141251750 141252437 -55942995 + Lx7 LINE L1 4412 5089 -2607 3 1662 808 75 0 0 chr1 141252437 141252543 -55942889 - B1_Mm SINE Alu 0 147 42 3 1662 231 209 58 83 chr1 141252467 141252587 -55942845 - RLTR25B LTR ERVK -515 513 397 3 1662 9689 200 56 75 chr1 141252587 141252786 -55942646 + Lx7 LINE L1 5090 5285 -2411 3 1662 413 73 0 0 chr1 141252795 141252850 -55942582 - B1_Mur4 SINE Alu -95 55 1 3 1662 9689 200 56 75 chr1 141252850 141255290 -55940142 + Lx7 LINE L1 5286 7696 0 3 1662 398 310 48 68 chr1 141255456 141255748 -55939684 - Lx8 LINE L1 -313 7331 6891 3 1662 216 0 0 0 chr1 141256290 141256314 -55939118 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1662 243 267 99 55 chr1 141256514 141256605 -55938827 + B1F2 SINE Alu 1 95 -54 3 1662 348 24 0 0 chr1 141256788 141256829 -55938603 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1662 341 168 53 0 chr1 141257504 141257635 -55937797 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 1662 1068 169 0 17 chr1 141257635 141257815 -55937617 - B2_Mm2 SINE B2 -18 177 1 3 1662 231 137 19 38 chr1 141257817 141257870 -55937562 + (TTTAA)n Simple_repeat Simple_repeat 1 52 0 3 1662 433 341 31 0 chr1 141257977 141258106 -55937326 - RSINE1 SINE B4 -29 136 4 3 1662 31 68 0 0 chr1 141258851 141258910 -55936522 + AT_rich Low_complexity Low_complexity 1 59 0 3 1662 2486 80 8 0 chr1 141259441 141259818 -55935614 + MusHAL1 LINE L1 1668 2047 -665 3 1662 16420 146 8 19 chr1 141259815 141260582 -55934850 + Lx LINE L1 2900 3659 -2224 3 1662 2298 42 0 10 chr1 141260582 141260872 -55934560 + L1Md_F3 LINE L1 6284 6570 -14 3 1662 16420 132 21 15 chr1 141260872 141263852 -55931580 + Lx LINE L1 3660 6653 -1 3 1662 279 0 0 0 chr1 141264235 141264266 -55931166 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1662 554 317 159 26 chr1 141264736 141264969 -55930463 - B4A SINE B4 0 292 29 3 1662 201 39 0 0 chr1 141265940 141265966 -55929466 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1662 8482 8 0 0 chr1 141265979 141267066 -55928366 - L1Md_A LINE L1 0 6582 5496 3 1662 1824 193 25 33 chr1 141267368 141267760 -55927672 - RLTR11A2 LTR ERVK -138 389 1 3 1662 226 282 69 14 chr1 141268027 141268099 -55927333 - MamSINE1 SINE tRNA -195 95 20 3 1662 255 407 24 24 chr1 141268694 141268860 -55926572 + L2a LINE L2 2951 3116 -310 3 1662 2819 155 36 15 chr1 141268923 141269395 -55926037 + RLTR20B3 LTR ERVK 1 482 -95 3 1662 380 143 0 14 chr1 141269395 141269466 -55925966 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1662 297 0 0 0 chr1 141269466 141269499 -55925933 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1662 537 159 11 33 chr1 141269501 141269592 -55925840 + RLTR20B3 LTR ERVK 488 576 -1 3 1662 297 217 90 44 chr1 141271501 141271612 -55923820 + B1F SINE Alu 32 141 -8 3 1662 215 346 79 143 chr1 141271623 141271839 -55923593 + B4 SINE B4 7 208 -84 3 1662 415 300 29 58 chr1 141271732 141271870 -55923562 + B1F SINE Alu 7 140 -9 3 1662 234 0 0 0 chr1 141271997 141272023 -55923409 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1662 222 37 0 0 chr1 141274370 141274397 -55921035 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1662 557 97 39 0 chr1 141274398 141274501 -55920931 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1662 798 255 89 134 chr1 141274735 141274942 -55920490 + RLTR12B LTR ERVK 1 232 -296 3 1662 315 0 0 0 chr1 141274942 141274977 -55920455 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1662 798 255 89 134 chr1 141274977 141275277 -55920155 + RLTR12B LTR ERVK 233 484 -44 3 1662 3107 203 135 38 chr1 141275312 141275366 -55920066 - RMER1A Other Other -66 964 878 3 1662 261 0 0 0 chr1 141275366 141275395 -55920037 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1662 483 18 0 0 chr1 141275395 141275450 -55919982 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1662 3107 203 133 37 chr1 141275450 141276287 -55919145 - RMER1A Other Other -153 877 5 3 1662 359 309 21 11 chr1 141276662 141276757 -55918675 + PB1 SINE Alu 14 109 -18 3 1662 330 26 0 0 chr1 141276762 141276801 -55918631 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 1662 21 0 0 0 chr1 141276805 141276826 -55918606 + AT_rich Low_complexity Low_complexity 1 21 0 3 1662 322 299 9 18 chr1 141276969 141277078 -55918354 - PB1D10 SINE Alu -9 108 1 3 1662 40 21 0 0 chr1 141277210 141277257 -55918175 + AT_rich Low_complexity Low_complexity 1 47 0 4 1662 34 0 0 0 chr1 141277296 141277330 -55918102 + AT_rich Low_complexity Low_complexity 1 34 0 4 1662 448 230 61 17 chr1 141277809 141277924 -55917508 + MLT1A0 LTR MaLR 1 120 -245 4 1662 251 274 0 0 chr1 141277928 141278001 -55917431 - L1_Mur2 LINE L1 -2234 3643 3571 4 1662 234 0 0 0 chr1 141278001 141278027 -55917405 + (TCC)n Simple_repeat Simple_repeat 1 26 0 4 1662 1644 230 64 52 chr1 141278027 141278390 -55917042 - L1_Rod LINE L1 -2241 3606 3235 4 1662 468 0 0 0 chr1 141278390 141278442 -55916990 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1662 1644 230 64 52 chr1 141278442 141278734 -55916698 - L1_Rod LINE L1 -2613 3234 2944 4 1662 2613 220 79 3 chr1 141278730 141279424 -55916008 + Lx9 LINE L1 6850 7596 -48 4 1662 664 85 0 11 chr1 141279448 141279543 -55915889 + BGLII_A LTR ERVK 1 94 -351 4 1662 1002 56 48 27 chr1 141280103 141280249 -55915183 - B2_Mm2 SINE B2 -14 181 33 4 1662 319 330 0 0 chr1 141280320 141280414 -55915018 + Tigger5 DNA MER2_type 95 188 -2218 4 1662 31 0 0 0 chr1 141280564 141280595 -55914837 + AT_rich Low_complexity Low_complexity 1 31 0 4 1662 483 18 0 0 chr1 141280628 141280684 -55914748 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1662 497 289 9 9 chr1 141280688 141280803 -55914629 - RSINE1 SINE B4 -48 117 3 4 1662 330 50 0 0 chr1 141281102 141281142 -55914290 + L1Md_F2 LINE L1 5547 5586 -297 4 1662 8206 41 0 6 chr1 141281142 141282143 -55913289 + L1Md_F2 LINE L1 5587 6581 -1 4 1662 546 16 0 0 chr1 141282392 141282455 -55912977 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1662 23 54 0 0 chr1 141282475 141282512 -55912920 + AT_rich Low_complexity Low_complexity 1 37 0 4 1662 1996 134 12 61 chr1 141282831 141283174 -55912258 - ORR1A3 LTR MaLR 0 326 1 4 1662 301 233 0 64 chr1 141283564 141283642 -55911790 + B1F SINE Alu 77 149 0 4 1662 527 280 194 12 chr1 141283839 141284009 -55911423 + ID_B1 SINE B4 3 203 -21 4 1662 233 182 0 18 chr1 141284051 141284107 -55911325 + GA-rich Low_complexity Low_complexity 2 56 0 4 1662 1266 47 0 0 chr1 141285099 141285247 -55910185 + B1_Mus1 SINE Alu 1 148 0 4 1662 315 0 0 0 chr1 141285247 141285282 -55910150 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1662 416 267 183 55 chr1 141285298 141285587 -55909845 - Lx8 LINE L1 -419 7054 6729 4 1662 1323 260 42 11 chr1 141285995 141286372 -55909060 - Lx8 LINE L1 -723 6750 6362 4 1662 2265 141 38 52 chr1 141286697 141286784 -55908648 - MTC LTR MaLR -8 413 343 4 1662 437 0 19 0 chr1 141286784 141286837 -55908595 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1662 2265 141 38 52 chr1 141286837 141287168 -55908264 - MTC LTR MaLR -79 342 1 4 1662 23 0 0 0 chr1 141287480 141287503 -55907929 + AT_rich Low_complexity Low_complexity 1 23 0 4 1662 239 240 0 0 chr1 141287570 141287620 -55907812 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1662 429 311 58 29 chr1 141287638 141287777 -55907655 + RSINE1 SINE B4 23 165 0 4 1662 21 36 0 0 chr1 141288152 141288180 -55907252 + AT_rich Low_complexity Low_complexity 1 28 0 4 1662 225 258 15 29 chr1 141289250 141289318 -55906114 - Kanga1a DNA Tc2 -6 748 682 4 1662 7804 135 25 13 chr1 141289724 141291054 -55904378 + Lx4A LINE L1 5713 7058 0 4 1662 245 244 217 0 chr1 141291147 141291262 -55904170 + Lx9 LINE L1 6795 6934 -710 4 1662 541 290 132 33 chr1 141291289 141291621 -55903811 + L1MC LINE L1 3101 3465 -2681 4 1662 219 182 0 52 chr1 141291776 141291834 -55903598 + T-rich Low_complexity Low_complexity 1 55 0 4 1662 239 212 30 0 chr1 141291926 141291992 -55903440 + L1MD LINE L1 4100 4167 -1979 4 1662 333 0 0 0 chr1 141292677 141292714 -55902718 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1662 339 25 0 0 chr1 141292714 141292753 -55902679 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1662 198 91 0 0 chr1 141294100 141294133 -55901299 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1662 225 358 65 43 chr1 141294442 141294626 -55900806 - MLT1F1 LTR MaLR -281 288 101 4 1662 529 219 161 22 chr1 141294658 141294882 -55900550 + Lx9 LINE L1 7314 7568 -76 4 1662 213 261 0 0 chr1 141295091 141295137 -55900295 + GA-rich Low_complexity Low_complexity 2 47 0 4 1662 225 83 0 0 chr1 141295239 141295275 -55900157 + (A)n Simple_repeat Simple_repeat 1 36 0 4 207 524 305 74 26 chr1 141295506 141295735 -55899697 - MLT1D LTR MaLR 0 505 266 4 1663 1530 93 8 35 chr1 141296167 141296424 -55899008 - Lx LINE L1 -2 6652 6403 4 1663 277 294 36 54 chr1 141298415 141298575 -55896857 - MLT1A LTR MaLR -41 349 197 4 1663 312 311 14 0 chr1 141299113 141299187 -55896245 - B1F SINE Alu -54 95 21 4 1663 389 335 13 26 chr1 141299205 141299361 -55896071 - MLT1A LTR MaLR -215 159 6 4 1663 273 345 65 65 chr1 141299840 141300054 -55895378 - MLT1J LTR MaLR -172 340 127 4 1663 326 298 137 33 chr1 141300895 141301107 -55894325 + MIRb SINE MIR 24 257 -11 4 1663 2089 57 3 28 chr1 141301133 141301420 -55894012 - MTB LTR MaLR 0 400 121 4 1663 3088 183 12 33 chr1 141301401 141302005 -55893427 - RLTR17 LTR ERVK -101 591 1 4 1663 23 68 0 0 chr1 141302007 141302051 -55893381 + AT_rich Low_complexity Low_complexity 1 44 0 4 1663 530 171 0 0 chr1 141303476 141303581 -55891851 + Lx9 LINE L1 7380 7484 -160 4 1663 1966 85 14 14 chr1 141303582 141303874 -55891558 + RLTR10D LTR ERVK 1 300 -111 4 1663 486 0 0 0 chr1 141303874 141303928 -55891504 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1663 1162 192 82 113 chr1 141303928 141304052 -55891380 + RLTR10D LTR ERVK 301 404 -7 4 1663 363 60 0 0 chr1 141304055 141304105 -55891327 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 4 1663 264 237 0 31 chr1 141304131 141304227 -55891205 + Lx9 LINE L1 7477 7569 -75 4 1663 579 298 11 0 chr1 141304409 141304587 -55890845 - B3A SINE B2 -18 180 1 4 1663 2358 166 41 3 chr1 141304711 141305103 -55890329 + MTC LTR MaLR 1 407 -14 4 1663 559 282 25 25 chr1 141305170 141305330 -55890102 - RSINE1 SINE B4 0 165 6 4 1663 526 210 31 39 chr1 141305961 141306090 -55889342 + ORR1E LTR MaLR 1 128 -231 4 1663 319 121 15 29 chr1 141306820 141306888 -55888544 + (CATA)n Simple_repeat Simple_repeat 3 69 0 4 1663 1782 146 0 61 chr1 141306897 141307239 -55888193 + ORR1A4 LTR MaLR 1 321 -8 4 1663 405 0 0 0 chr1 141307258 141307303 -55888129 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1663 3464 112 16 43 chr1 141307405 141307682 -55887750 - LTRIS2 LTR ERV1 0 564 290 4 1663 1620 26 0 20 chr1 141307682 141307878 -55887554 + B2_Mm1a SINE B2 2 193 0 4 1663 3464 112 16 43 chr1 141307878 141308178 -55887254 - LTRIS2 LTR ERV1 -275 289 5 4 1663 360 64 0 0 chr1 141308471 141308518 -55886914 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 4 1663 6777 63 15 3 chr1 141308766 141309644 -55885788 + RLTR13D6 LTR ERVK 15 902 0 4 1663 564 274 191 31 chr1 141310707 141310963 -55884469 + RMER15 LTR ERVL 279 575 0 4 1663 610 295 59 38 chr1 141310967 141311256 -55884176 + RMER15-int LTR ERVL 5 299 -4700 4 1663 3799 89 41 98 chr1 141311430 141311714 -55883718 - MT2B LTR ERVL -1 600 342 4 1663 703 50 10 10 chr1 141311714 141311815 -55883617 + (GAA)n Simple_repeat Simple_repeat 2 102 0 4 1663 3799 89 41 98 chr1 141311815 141312166 -55883266 - MT2B LTR ERVL -260 341 1 4 1663 310 304 9 9 chr1 141312171 141312287 -55883145 + RMER15-int LTR ERVL 578 693 -4306 4 1663 238 306 53 53 chr1 141312680 141312794 -55882638 + Lx8 LINE L1 6197 6310 -1163 4 1663 977 311 31 19 chr1 141312796 141313120 -55882312 - RMER15 LTR ERVL -2 573 246 4 1663 395 266 57 39 chr1 141313191 141313424 -55882008 - MTD LTR MaLR -162 238 1 4 1663 1058 275 52 66 chr1 141313425 141313599 -55881833 - L1_Rod LINE L1 -146 5701 5529 4 1663 589 277 14 58 chr1 141313599 141313806 -55881626 - B3A SINE B2 0 198 1 4 1663 1058 280 52 66 chr1 141313806 141314321 -55881111 - L1_Rod LINE L1 -317 5563 5051 4 1663 2909 157 135 5 chr1 141314340 141314924 -55880508 + RMER6C LTR ERVK 27 686 -4 4 1663 1650 282 68 60 chr1 141314953 141315611 -55879821 - L1M3 LINE L1 -1112 5028 4324 4 1663 315 0 0 0 chr1 141315611 141315646 -55879786 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1663 1650 288 64 62 chr1 141315646 141316065 -55879367 - L1M3 LINE L1 -1817 4323 3966 4 1663 2515 250 98 49 chr1 141316067 141317004 -55878428 - RMER15-int LTR ERVL -229 4770 3788 4 1663 425 116 0 0 chr1 141317994 141318063 -55877369 - L1Md_F2 LINE L1 -12 6570 6502 4 1663 24 32 0 0 chr1 141323503 141323534 -55871898 + AT_rich Low_complexity Low_complexity 1 31 0 4 1663 536 290 92 29 chr1 141323593 141323831 -55871601 + B4A SINE B4 3 255 -37 4 1663 181 328 75 0 chr1 141324400 141324467 -55870965 - MIR SINE MIR 0 262 191 4 1663 402 90 0 103 chr1 141324830 141324917 -55870515 - L1Md_F2 LINE L1 0 6582 6505 4 1663 22 35 0 0 chr1 141325166 141325195 -55870237 + AT_rich Low_complexity Low_complexity 1 29 0 4 1663 1254 112 11 0 chr1 141326067 141326255 -55869177 - B2_Mm2 SINE B2 -3 192 3 4 1663 225 296 136 0 chr1 141326672 141326760 -55868672 - PB1D7 SINE Alu -9 111 12 4 1663 209 241 110 85 chr1 141327626 141327744 -55867688 + MIRb SINE MIR 110 230 -38 4 1663 968 222 45 10 chr1 141327988 141328188 -55867244 + B3 SINE B2 1 207 -9 4 1663 237 277 79 0 chr1 141328821 141328922 -55866510 - L1MC1 LINE L1 -23 6310 6202 4 1663 423 264 114 11 chr1 141329129 141329393 -55866039 - L1MC1 LINE L1 -753 5580 5290 4 1663 546 264 9 0 chr1 141329474 141329584 -55865848 - RSINE1 SINE B4 -50 115 5 4 1663 33 25 0 0 chr1 141329594 141329634 -55865798 + AT_rich Low_complexity Low_complexity 1 40 0 4 1663 531 308 99 34 chr1 141330129 141330391 -55865041 - B4A SINE B4 -12 280 2 4 1663 1325 225 132 78 chr1 141331221 141331416 -55864016 - MT2A LTR ERVL 0 601 321 4 1663 880 145 14 0 chr1 141331416 141331561 -55863871 - B1_Mus1 SINE Alu -1 147 1 4 1663 1325 220 190 20 chr1 141331561 141331836 -55863596 - MT2A LTR ERVL -213 320 3 4 1663 189 107 0 0 chr1 141332011 141332039 -55863393 + (TTTTC)n Simple_repeat Simple_repeat 1 28 0 4 1663 1168 135 38 0 chr1 141332477 141332662 -55862770 - B2_Mm2 SINE B2 -2 193 2 4 1663 290 320 87 0 chr1 141334678 141334781 -55860651 + PB1D9 SINE Alu 1 112 -8 4 1663 25 31 0 0 chr1 141337831 141337863 -55857569 + AT_rich Low_complexity Low_complexity 1 32 0 4 1663 1379 70 11 0 chr1 141339655 141339840 -55855592 - B2_Mm1a SINE B2 -6 187 1 4 1663 603 306 64 53 chr1 141341281 141341553 -55853879 + B4 SINE B4 14 290 -2 4 1663 470 96 14 0 chr1 141341942 141342015 -55853417 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 4 1663 27 0 0 0 chr1 141342338 141342365 -55853067 + AT_rich Low_complexity Low_complexity 1 27 0 5 1663 562 305 134 8 chr1 141342530 141342768 -55852664 - MLT1D LTR MaLR -235 270 3 5 1663 22 0 0 0 chr1 141343419 141343441 -55851991 + AT_rich Low_complexity Low_complexity 1 22 0 5 1663 517 225 27 9 chr1 141344413 141344525 -55850907 - PB1D7 SINE Alu -1 119 6 5 1663 270 81 0 0 chr1 141345639 141345676 -55849756 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1663 199 258 147 21 chr1 141346483 141346578 -55848854 - MIRc SINE MIR -44 224 118 5 1663 36 40 0 0 chr1 141349709 141349759 -55845673 + AT_rich Low_complexity Low_complexity 1 50 0 5 1663 22 0 0 0 chr1 141349775 141349797 -55845635 + AT_rich Low_complexity Low_complexity 1 22 0 5 1663 663 279 87 105 chr1 141350364 141350513 -55844919 - RMER5 LTR ERV1 -38 496 365 5 1663 1085 73 0 0 chr1 141350513 141350649 -55844783 + B1_Mus2 SINE Alu 1 136 -11 5 1663 207 0 0 0 chr1 141350652 141350675 -55844757 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1663 663 279 87 105 chr1 141350675 141351026 -55844406 - RMER5 LTR ERV1 -170 364 1 5 1663 1102 61 0 0 chr1 141355260 141355391 -55840041 + B1_Mus2 SINE Alu 5 135 -12 5 1663 216 0 0 0 chr1 141355393 141355417 -55840015 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1663 25 0 0 0 chr1 141355431 141355456 -55839976 + AT_rich Low_complexity Low_complexity 1 25 0 5 1663 799 226 56 5 chr1 141357631 141357827 -55837605 - B3 SINE B2 -9 207 2 5 1663 193 192 177 13 chr1 141358073 141358152 -55837280 - MIRc SINE MIR -65 203 112 5 1663 710 251 159 32 chr1 141358960 141359211 -55836221 + B4 SINE B4 6 288 -4 5 1663 290 87 0 21 chr1 141359215 141359262 -55836170 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1663 676 278 152 47 chr1 141359924 141360047 -55835385 - L1MA9 LINE L1 0 6312 6158 5 1663 483 48 0 0 chr1 141360047 141360109 -55835323 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1663 676 278 152 47 chr1 141360109 141360582 -55834850 - L1MA9 LINE L1 -155 6157 5654 5 1663 21 0 0 0 chr1 141360701 141360722 -55834710 + AT_rich Low_complexity Low_complexity 1 21 0 5 1663 510 17 0 0 chr1 141360942 141361001 -55834431 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1663 765 229 35 0 chr1 141361003 141361173 -55834259 - B3A SINE B2 -22 176 1 5 1663 2102 228 21 0 chr1 141361457 141361882 -55833550 - Lx6 LINE L1 -17 7443 7010 5 1663 1811 210 30 5 chr1 141361890 141362320 -55833112 + L1_Mur3 LINE L1 5165 5605 -275 5 1663 357 43 0 0 chr1 141362376 141362423 -55833009 + (CCCCCA)n Simple_repeat Simple_repeat 2 48 0 5 1663 1049 231 201 19 chr1 141362482 141363015 -55832417 - Lx7 LINE L1 -200 7496 6867 5 1663 228 265 138 35 chr1 141363400 141363631 -55831801 - L1MA6 LINE L1 0 6300 6046 5 1663 352 250 89 24 chr1 141364809 141364932 -55830500 + L2a LINE L2 3290 3420 -6 5 1663 189 64 41 41 chr1 141365137 141365186 -55830246 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 5 1663 938 289 51 22 chr1 141367732 141368008 -55827424 - B4A SINE B4 -3 289 6 5 1663 239 253 27 0 chr1 141368666 141368741 -55826691 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 5 1663 261 0 0 0 chr1 141368828 141368857 -55826575 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1663 413 289 124 0 chr1 141369394 141369595 -55825837 - MER82 DNA MER2_type -220 433 208 5 1663 850 144 13 33 chr1 141370586 141370737 -55824695 - B1_Mur3 SINE Alu -1 148 1 5 1663 229 179 0 51 chr1 141371267 141371326 -55824106 - MT2A LTR ERVL -477 56 1 5 1663 304 218 192 0 chr1 141373749 141373827 -55821605 - B3A SINE B2 -104 94 2 5 1663 27 49 0 0 chr1 141378391 141378432 -55817000 + AT_rich Low_complexity Low_complexity 1 41 0 5 1663 659 24 24 0 chr1 141379384 141379468 -55815964 + (TTTTC)n Simple_repeat Simple_repeat 5 90 0 5 1663 300 300 278 0 chr1 141379509 141379683 -55815749 - B4A SINE B4 -55 237 17 5 1663 2967 47 44 10 chr1 141379895 141380280 -55815152 + MTB LTR MaLR 3 400 0 5 1663 5033 86 191 81 chr1 141380280 141381267 -55814165 + MTB-int LTR MaLR 1 1095 -3 5 1663 3185 52 0 20 chr1 141381270 141381678 -55813754 + MTB LTR MaLR 1 400 0 5 1663 477 144 12 35 chr1 141382070 141382181 -55813251 - MT-int LTR MaLR -443 815 650 5 1663 388 156 46 0 chr1 141382526 141382635 -55812797 + CT-rich Low_complexity Low_complexity 2 115 0 5 1663 682 265 29 14 chr1 141383182 141383389 -55812043 - B3 SINE B2 -4 212 3 5 1663 530 231 120 0 chr1 141385156 141385273 -55810159 + B1_Mur3 SINE Alu 10 140 -9 5 1663 954 117 11 48 chr1 141385303 141385469 -55809963 - B2_Mm2 SINE B2 -34 182 1 5 1663 24 0 0 0 chr1 141387127 141387151 -55808281 + AT_rich Low_complexity Low_complexity 1 24 0 5 1663 251 297 0 15 chr1 141388409 141388474 -55806958 + ID4_ SINE ID 2 65 -18 5 1663 214 207 33 49 chr1 141388691 141388752 -55806680 - L2 LINE L2 -531 2888 2829 5 1663 21 0 0 0 chr1 141389692 141389713 -55805719 + AT_rich Low_complexity Low_complexity 1 21 0 5 1663 423 230 183 0 chr1 141390492 141390683 -55804749 - Lx9 LINE L1 0 7644 7419 5 1663 1146 41 0 27 chr1 141390708 141390858 -55804574 - B1_Mus2 SINE Alu 0 147 2 5 1663 1330 169 181 0 chr1 141391104 141391424 -55804008 - ORR1C1 LTR MaLR 0 378 1 5 1663 816 307 42 23 chr1 141391472 141391732 -55803700 - MTE2b LTR MaLR -114 265 1 5 1663 2449 144 25 63 chr1 141391778 141392333 -55803099 - RLTR23 LTR ERV1 -1 429 1 5 1663 671 318 60 18 chr1 141392504 141392840 -55802592 + RMER5 LTR ERV1 73 422 -112 5 1663 247 317 99 0 chr1 141393615 141393716 -55801716 + MER77 LTR ERVL 484 594 -13 5 1663 363 326 85 53 chr1 141393638 141393826 -55801606 + MER21B LTR ERV1 478 671 -192 5 1663 501 32 0 0 chr1 141393951 141394014 -55801418 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1663 697 97 9 0 chr1 141394352 141394466 -55800966 - L1_Mus2 LINE L1 0 6566 6452 5 1663 2993 282 89 6 chr1 141394479 141395505 -55799927 - Lx8 LINE L1 -140 7333 6223 5 1663 549 0 0 0 chr1 141395509 141395570 -55799862 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1663 500 238 125 23 chr1 141396067 141396228 -55799204 + B3 SINE B2 1 172 -21 5 1663 1871 155 19 0 chr1 141396228 141396551 -55798881 - ORR1A4 LTR MaLR 0 329 1 5 1663 232 310 98 54 chr1 141396551 141396573 -55798859 + B2_Mm1a SINE B2 173 192 -1 5 1663 219 254 0 16 chr1 141396823 141396887 -55798545 + A-rich Low_complexity Low_complexity 3 65 0 5 1663 242 273 73 16 chr1 141396929 141397052 -55798380 + L1M2 LINE L1 3544 3673 -2470 5 1663 970 217 32 104 chr1 141397329 141397721 -55797711 + RMER16 LTR ERVK 2 533 0 5 1663 894 170 151 25 chr1 141399439 141399638 -55795794 + URR1A DNA MER1_type 2 225 -1 5 1663 442 331 8 8 chr1 141399651 141399773 -55795659 + MER2 DNA MER2_type 224 345 0 5 1663 228 318 127 0 chr1 141399773 141399876 -55795556 + MER33 DNA MER1_type 29 147 -177 5 1663 263 107 36 0 chr1 141400189 141400245 -55795187 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1663 1179 41 7 13 chr1 141400754 141400903 -55794529 + B1_Mus1 SINE Alu 1 148 0 5 1663 6400 124 17 38 chr1 141401485 141402571 -55792861 - Lx3B LINE L1 -3 6970 5908 5 1663 207 0 0 0 chr1 141402576 141402599 -55792833 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1663 929 73 0 8 chr1 141402599 141402717 -55792715 - B1_Mm SINE Alu -29 118 1 5 1663 201 250 35 23 chr1 141404988 141405074 -55790358 + (TATG)n Simple_repeat Simple_repeat 4 90 0 5 1663 561 315 44 15 chr1 141405089 141405360 -55790072 - B4A SINE B4 -12 280 2 5 1663 290 373 52 69 chr1 141406185 141406418 -55789014 + MLT1D LTR MaLR 2 230 -275 5 1663 276 323 132 30 chr1 141406511 141406776 -55788656 - MLT1E1A LTR MaLR -106 574 283 5 1663 4125 53 0 0 chr1 141408437 141408946 -55786486 + L1Md_F2 LINE L1 6068 6576 -6 5 1663 2068 105 98 3 chr1 141408977 141409312 -55786120 + Lx LINE L1 6285 6651 -3 5 1663 24 96 0 0 chr1 141410318 141410391 -55785041 + AT_rich Low_complexity Low_complexity 1 73 0 5 1663 23 68 0 0 chr1 141410752 141410796 -55784636 + AT_rich Low_complexity Low_complexity 1 44 0 5 1663 984 24 124 8 chr1 141411404 141411533 -55783899 - B1_Mus2 SINE Alu -1 146 3 5 1663 333 0 0 0 chr1 141412644 141412681 -55782751 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1663 1041 74 0 0 chr1 141412681 141412816 -55782616 - B1_Mus1 SINE Alu -13 135 1 5 1663 276 30 0 0 chr1 141414937 141414970 -55780462 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1663 1009 335 73 52 chr1 141415453 141416331 -55779101 - Lx8 LINE L1 -9 7464 6569 5 1663 1392 81 5 0 chr1 141416993 141417178 -55778254 + B2_Mm1t SINE B2 1 186 -7 5 1663 1183 209 72 152 chr1 141417179 141417580 -55777852 + RLTR30 LTR ERV1 11 379 0 5 1663 677 151 77 28 chr1 141417882 141418025 -55777407 - B1_Mur4 SINE Alu 0 150 1 5 1663 27 81 0 0 chr1 141420293 141420355 -55775077 + AT_rich Low_complexity Low_complexity 1 62 0 5 1663 529 287 59 44 chr1 141421768 141421972 -55773460 + B3 SINE B2 4 210 -6 5 1663 25 0 0 0 chr1 141422311 141422336 -55773096 + AT_rich Low_complexity Low_complexity 1 25 0 5 1663 312 158 82 21 chr1 141422374 141422471 -55772961 - L1_Mur2 LINE L1 -4367 1510 1408 5 1663 7777 123 33 8 chr1 141422477 141423695 -55771737 - Lx2 LINE L1 -6 6991 5744 5 1663 635 227 6 0 chr1 141423695 141423867 -55771565 - Lx2 LINE L1 -838 6159 5987 5 1663 1851 160 2 199 chr1 141423856 141424424 -55771008 - L1_Mur2 LINE L1 -670 5207 4752 5 1663 4433 126 4 20 chr1 141424425 141425136 -55770296 + L1_Mus4 LINE L1 5935 6634 -2 5 1663 2472 97 6 3 chr1 141425512 141425864 -55769568 - L1_Mus2 LINE L1 0 6566 6214 5 1663 321 176 0 0 chr1 141425864 141425932 -55769500 - Lx2 LINE L1 -943 6054 5987 6 1663 1588 147 4 4 chr1 141425921 141426188 -55769244 - Lx2 LINE L1 -670 5207 4941 6 1663 659 117 0 0 chr1 141426188 141426299 -55769133 + L1_Mus4 LINE L1 6511 6621 -15 6 1663 729 11 0 0 chr1 141426299 141426388 -55769044 - L1_Mm LINE L1 -442 5441 5353 6 1663 1863 0 0 0 chr1 141426388 141426599 -55768833 + L1Md_T LINE L1 6372 6582 0 6 1663 213 39 0 0 chr1 141426621 141426647 -55768785 + (A)n Simple_repeat Simple_repeat 1 26 0 6 207 251 228 0 0 chr1 141426665 141426722 -55768710 - Lx2 LINE L1 -949 4928 4872 6 1664 28799 87 11 26 chr1 141426717 141428573 -55766859 - L1_Mus2 LINE L1 -353 6213 4343 6 1664 612 0 0 0 chr1 141428583 141428651 -55766781 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 1664 1297 59 0 17 chr1 141428651 141428813 -55766619 - B2_Mm1a SINE B2 -33 160 1 6 1664 28799 99 10 38 chr1 141428813 141431878 -55763554 - L1_Mus2 LINE L1 -1541 4342 1253 6 1664 820 233 84 65 chr1 141431923 141432215 -55763217 + MT2B LTR ERVL 274 546 -55 6 1664 708 57 19 9 chr1 141432249 141432356 -55763076 + (GA)n Simple_repeat Simple_repeat 2 109 0 6 1664 274 333 0 17 chr1 141432386 141432505 -55762927 - MERVL-int LTR ERVL -3046 2439 2323 6 1664 609 241 0 0 chr1 141432508 141432649 -55762783 + MERVL_2A-int LTR ERVL 2536 2676 -3085 6 1664 868 211 0 0 chr1 141432651 141432836 -55762596 + MERVL_2A-int LTR ERVL 2596 2780 -2981 6 1664 1479 241 44 22 chr1 141432840 141433205 -55762227 + ORR1C1 LTR MaLR 6 378 0 6 1664 626 216 22 0 chr1 141433206 141433345 -55762087 + MERVL_2A-int LTR ERVL 2675 2816 -2669 6 1664 8417 225 46 14 chr1 141433355 141435617 -55759815 + MERVL_2A-int LTR ERVL 3026 5402 -359 6 1664 1645 207 40 5 chr1 141435617 141435996 -55759436 + ORR1B1 LTR MaLR 1 392 -2 6 1664 8417 228 50 16 chr1 141435996 141436274 -55759158 + MERVL_2A-int LTR ERVL 5403 5680 -81 6 1664 895 255 3 98 chr1 141436276 141436624 -55758808 + L1_Mur1 LINE L1 1 315 -6667 6 1664 1152 234 50 0 chr1 141436632 141436871 -55758561 + ORR1B1 LTR MaLR 140 390 -4 6 1664 38747 12 6 6 chr1 141436917 141443500 -55751932 - L1Md_A LINE L1 0 6582 3 6 1664 941 82 74 0 chr1 141444087 141444222 -55751210 + B1_Mus1 SINE Alu 4 148 0 6 1664 199 106 20 41 chr1 141444222 141444271 -55751161 + (CAAA)n Simple_repeat Simple_repeat 4 51 0 6 1664 896 304 103 31 chr1 141444685 141445395 -55750037 + L1MA4A LINE L1 4467 5227 -916 6 1664 183 85 42 21 chr1 141445485 141445533 -55749899 + (ATTTG)n Simple_repeat Simple_repeat 1 49 0 6 1664 791 117 115 20 chr1 141445595 141445743 -55749689 - L1_Mus3 LINE L1 -6 6632 6471 6 1664 414 0 0 0 chr1 141445748 141445794 -55749638 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1664 1082 92 0 0 chr1 141445817 141445959 -55749473 - B1_Mus2 SINE Alu -5 142 1 6 1664 198 0 0 0 chr1 141446188 141446210 -55749222 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1664 381 323 84 27 chr1 141446272 141446686 -55748746 + L1MA4A LINE L1 5488 5925 -378 6 1664 1138 209 198 9 chr1 141446806 141447125 -55748307 + ORR1C2 LTR MaLR 6 384 0 6 1664 198 118 0 0 chr1 141448241 141448275 -55747157 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1664 243 0 0 0 chr1 141448305 141448332 -55747100 + (ATTTG)n Simple_repeat Simple_repeat 3 29 0 6 1664 24 0 0 0 chr1 141448424 141448448 -55746984 + AT_rich Low_complexity Low_complexity 1 24 0 6 1664 192 77 0 0 chr1 141448572 141448598 -55746834 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1664 985 47 0 0 chr1 141449082 141449209 -55746223 + L1_Mus1 LINE L1 6441 6567 0 6 1664 542 15 15 0 chr1 141449259 141449326 -55746106 + (GAAAA)n Simple_repeat Simple_repeat 4 71 0 6 1664 1114 234 162 9 chr1 141449498 141449826 -55745606 + ORR1C1 LTR MaLR 1 378 0 6 1664 403 384 30 21 chr1 141450445 141450679 -55744753 + MLT1D LTR MaLR 261 496 -9 6 1664 459 342 3 1 chr1 141451031 141451203 -55744229 - B3 SINE B2 -7 191 19 6 1664 229 295 47 9 chr1 141451996 141452102 -55743330 + L1M3 LINE L1 3499 3608 -2532 6 1664 455 278 9 18 chr1 141452305 141452436 -55742996 + B1F1 SINE Alu 10 139 -10 6 1664 351 331 76 29 chr1 141453198 141453369 -55742063 - B4A SINE B4 -98 194 16 6 1664 189 74 0 0 chr1 141453536 141453563 -55741869 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1664 21 57 0 0 chr1 141454215 141454250 -55741182 + AT_rich Low_complexity Low_complexity 1 35 0 6 1664 438 111 0 0 chr1 141455005 141455065 -55740367 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1664 1318 98 11 5 chr1 141455065 141455250 -55740182 - B2_Mm2 SINE B2 -9 186 1 6 1664 438 111 0 0 chr1 141455250 141455319 -55740113 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1664 822 113 0 0 chr1 141455509 141455633 -55739799 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 1664 227 197 76 0 chr1 141455648 141455714 -55739718 + Lx9 LINE L1 7534 7604 -40 6 1664 21 57 0 0 chr1 141456353 141456388 -55739044 + AT_rich Low_complexity Low_complexity 1 35 0 6 1664 22 35 0 0 chr1 141456587 141456616 -55738816 + AT_rich Low_complexity Low_complexity 1 29 0 6 1664 35 24 0 0 chr1 141456942 141456984 -55738448 + AT_rich Low_complexity Low_complexity 1 42 0 6 1664 1198 294 67 33 chr1 141457054 141457753 -55737679 - Lx9 LINE L1 -941 6703 5878 6 1664 472 308 5 25 chr1 141457766 141457969 -55737463 - L1M2 LINE L1 -805 5338 5140 6 1664 423 0 0 0 chr1 141458061 141458108 -55737324 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 6 1664 7170 94 11 1 chr1 141458113 141459542 -55735890 - L1_Mus2 LINE L1 -3 6563 5121 6 1664 20944 174 77 9 chr1 141459544 141463808 -55731624 + L1_Mus3 LINE L1 1157 5737 -149 6 1664 3198 48 2 20 chr1 141463808 141464211 -55731221 + MTA_Mm LTR MaLR 1 396 0 6 1664 20944 99 21 7 chr1 141464211 141465109 -55730323 + L1_Mus3 LINE L1 5735 6637 -1 6 1664 5499 205 46 25 chr1 141465156 141466625 -55728807 + L1_Mur3 LINE L1 3101 4600 -1280 6 1664 5277 255 67 46 chr1 141466610 141467476 -55727956 + Lx6 LINE L1 5850 6736 -724 6 1664 4853 51 2 2 chr1 141467476 141468063 -55727369 - LTRIS_Mus LTR ERV1 0 587 1 6 1664 5277 255 67 46 chr1 141468063 141468203 -55727229 + Lx6 LINE L1 6737 6878 -582 6 1664 594 41 0 0 chr1 141468203 141468276 -55727156 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1664 5277 255 67 46 chr1 141468276 141468845 -55726587 + Lx6 LINE L1 6879 7460 0 6 1664 220 27 26 26 chr1 141468870 141468908 -55726524 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 6 1664 5045 34 0 7 chr1 141469443 141470035 -55725397 - L1Md_F2 LINE L1 -14 6568 5981 6 1664 1682 58 0 26 chr1 141470205 141470435 -55724997 - L1_Mus1 LINE L1 0 6567 6344 6 1664 21 0 0 0 chr1 141470656 141470677 -55724755 + AT_rich Low_complexity Low_complexity 1 21 0 6 1664 1528 281 132 48 chr1 141471108 141471908 -55723524 - Lx9 LINE L1 -945 6699 5832 6 1664 24 0 0 0 chr1 141472024 141472048 -55723384 + AT_rich Low_complexity Low_complexity 1 24 0 6 1664 974 297 130 66 chr1 141472086 141472600 -55722832 + MT2B LTR ERVL 1 556 -45 6 1664 450 49 0 0 chr1 141472600 141472661 -55722771 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1664 974 297 130 66 chr1 141472661 141472709 -55722723 + MT2B LTR ERVL 557 599 -2 6 1664 1124 247 69 3 chr1 141472711 141473016 -55722416 + MERVL_2A-int LTR ERVL 1 325 -5436 6 1664 2844 219 28 20 chr1 141473019 141473657 -55721775 + MERVL_2A-int LTR ERVL 2137 2779 -2982 6 1664 1451 280 14 14 chr1 141473658 141474010 -55721422 + ORR1B2 LTR MaLR 1 352 -15 6 1664 2799 62 3 39 chr1 141474067 141474452 -55720980 - L1_Mus1 LINE L1 -1 6566 6196 6 1664 4025 91 18 3 chr1 141474452 141475227 -55720205 + L1_Mus1 LINE L1 5380 6168 -398 6 1664 620 171 27 0 chr1 141475242 141475353 -55720079 + MERVL_2A-int LTR ERVL 2703 2816 -2669 6 1664 3598 40 22 13 chr1 141475418 141475868 -55719564 - L1Md_F2 LINE L1 -14 6568 6115 6 1664 3213 31 8 0 chr1 141475868 141476253 -55719179 + L1Md_F2 LINE L1 5701 6088 -494 6 1664 487 267 143 21 chr1 141476253 141476500 -55718932 - RLTR10A LTR ERVK 0 411 114 6 1664 702 64 0 2 chr1 141476531 141476629 -55718803 + L1Md_F2 LINE L1 6061 6164 -418 6 1664 10224 228 67 19 chr1 141476633 141478279 -55717153 + MERVL_2A-int LTR ERVL 3064 4819 -942 6 1664 4504 83 3 0 chr1 141478279 141478882 -55716550 - L1_Mus2 LINE L1 0 6566 5962 6 1664 10224 228 67 19 chr1 141478882 141479455 -55715977 + MERVL_2A-int LTR ERVL 4820 5402 -359 6 1664 1381 211 64 11 chr1 141479455 141479829 -55715603 + ORR1B1 LTR MaLR 1 394 0 6 1664 10224 228 67 19 chr1 141479829 141480108 -55715324 + MERVL_2A-int LTR ERVL 5403 5682 -79 6 1664 996 252 6 98 chr1 141480108 141480455 -55714977 + L1_Mur1 LINE L1 1 315 -6667 6 1664 1234 256 16 0 chr1 141480464 141480714 -55714718 + ORR1B1 LTR MaLR 141 394 0 6 1664 26 88 0 0 chr1 141480890 141480958 -55714474 + AT_rich Low_complexity Low_complexity 1 68 0 6 1664 671 315 100 18 chr1 141481690 141482179 -55713253 + L1M2 LINE L1 4417 4945 -1198 6 1664 27 29 0 0 chr1 141482483 141482517 -55712915 + AT_rich Low_complexity Low_complexity 1 34 0 6 1664 549 83 0 0 chr1 141482548 141482632 -55712800 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1664 322 91 0 0 chr1 141483275 141483319 -55712113 + Lx LINE L1 6461 6504 -150 6 1664 24 0 0 0 chr1 141483322 141483346 -55712086 + AT_rich Low_complexity Low_complexity 1 24 0 6 1664 35052 62 18 12 chr1 141483619 141488848 -55706584 + L1Md_F3 LINE L1 218 5585 -298 6 1664 7818 49 10 0 chr1 141488848 141489822 -55705610 + L1Md_F3 LINE L1 5587 6570 -14 6 1664 924 214 52 19 chr1 141489858 141490068 -55705364 + ORR1C1 LTR MaLR 162 378 0 6 1664 22 0 0 0 chr1 141490635 141490657 -55704775 + AT_rich Low_complexity Low_complexity 1 22 0 6 1664 6843 31 1 0 chr1 141491102 141491911 -55703521 - L1Md_T LINE L1 -1 6581 5772 6 1664 1987 18 0 0 chr1 141491913 141492136 -55703296 + L1Md_T LINE L1 5477 5699 -184 6 1664 353 330 174 19 chr1 141492313 141492795 -55702637 + L1MDa LINE L1 1591 2147 -4486 6 1664 2022 52 0 0 chr1 141492834 141493082 -55702350 + L1_Mus1 LINE L1 6320 6567 0 6 1664 4150 207 53 8 chr1 141493107 141494051 -55701381 + Lx2B LINE L1 6010 6995 -5 6 1664 2354 258 152 89 chr1 141494393 141494931 -55700501 + Lx7 LINE L1 5722 6398 -1298 6 1664 1411 68 52 0 chr1 141494931 141495122 -55700310 + L1_Mus1 LINE L1 6367 6567 0 6 1664 2354 258 152 89 chr1 141495122 141495521 -55699911 + Lx7 LINE L1 6399 6740 -956 6 1664 1425 74 21 0 chr1 141495521 141495710 -55699722 - B2_Mm2 SINE B2 -2 193 1 6 1664 2354 258 152 89 chr1 141495710 141495924 -55699508 + Lx7 LINE L1 6741 6946 -750 6 1664 807 271 47 12 chr1 141496330 141496584 -55698848 - Lx6 LINE L1 -32 7428 7166 6 1664 551 161 0 0 chr1 141496589 141496682 -55698750 + L1_Mur2 LINE L1 5073 5165 -712 6 1664 33 0 0 0 chr1 141496771 141496804 -55698628 + AT_rich Low_complexity Low_complexity 1 33 0 6 1664 386 290 136 40 chr1 141497075 141497251 -55698181 + RMER21B LTR ERV1 300 492 -350 6 1664 376 303 106 51 chr1 141497341 141497616 -55697816 + RMER21B LTR ERV1 278 567 -275 6 1664 228 268 108 40 chr1 141497660 141497734 -55697698 + RMER21B LTR ERV1 757 835 -112 6 1664 912 139 60 22 chr1 141497949 141498133 -55697299 - B2_Mm2 SINE B2 -3 192 2 6 1664 239 378 26 35 chr1 141498297 141498412 -55697020 - PB1D10 SINE Alu -1 116 3 6 1664 331 333 0 0 chr1 141498442 141498517 -55696915 + RSINE1 SINE B4 4 78 -87 6 1664 24 53 0 0 chr1 141499053 141499091 -55696341 + AT_rich Low_complexity Low_complexity 1 38 0 6 1664 4242 153 63 0 chr1 141499091 141499857 -55695575 + L1_Mur2 LINE L1 3828 4641 -1236 7 1664 1627 106 52 59 chr1 141500062 141500334 -55695098 - L1Md_F2 LINE L1 -12 6570 6301 1 1664 2257 43 0 4 chr1 141500332 141500610 -55694822 + L1Md_F2 LINE L1 6306 6582 0 1 1664 19897 65 7 1 chr1 141500611 141503695 -55691737 - L1Md_F2 LINE L1 -267 6315 3213 1 1664 1457 157 0 0 chr1 141503697 141503927 -55691505 - L1Md_F LINE L1 -6000 519 290 2 1664 22 0 0 0 chr1 141504184 141504206 -55691226 + AT_rich Low_complexity Low_complexity 1 22 0 3 1664 200 35 35 0 chr1 141504956 141504985 -55690447 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1664 433 84 28 0 chr1 141505352 141505423 -55690009 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 5 1664 1236 21 0 0 chr1 141506518 141506660 -55688772 + B1_Mus2 SINE Alu 1 142 -5 6 1664 344 362 60 15 chr1 141506729 141507060 -55688372 + Lx9 LINE L1 7080 7425 -219 7 1664 387 0 0 0 chr1 141507092 141507135 -55688297 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1664 1694 272 33 16 chr1 141508211 141508749 -55686683 + Lx6 LINE L1 5734 6273 -1187 9 1664 1576 272 125 4 chr1 141508746 141509591 -55685841 + Lx6 LINE L1 6513 7460 0 9 1664 28045 67 9 48 chr1 141509992 141513563 -55681869 + L1Md_T LINE L1 270 3708 -2178 1 1664 8099 53 0 0 chr1 141513563 141514559 -55680873 + L1Md_T LINE L1 5587 6582 0 1 1664 28045 79 11 58 chr1 141514559 141516439 -55678993 + L1Md_T LINE L1 3709 5588 -298 1 1664 8776 16 0 1 chr1 141516440 141517437 -55677995 + L1Md_T LINE L1 5590 6585 0 1 1664 22 35 0 0 chr1 141518126 141518155 -55677277 + AT_rich Low_complexity Low_complexity 1 29 0 1 1664 21 57 0 0 chr1 141518819 141518854 -55676578 + AT_rich Low_complexity Low_complexity 1 35 0 1 1664 26 0 0 0 chr1 141519379 141519405 -55676027 + AT_rich Low_complexity Low_complexity 1 26 0 1 1664 27 62 0 0 chr1 141519724 141519772 -55675660 + AT_rich Low_complexity Low_complexity 1 48 0 1 1664 333 0 0 0 chr1 141519863 141519900 -55675532 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1664 13127 108 2 34 chr1 141520157 141522634 -55672798 - L1Md_F LINE L1 -2777 3106 725 1 1664 347 278 37 22 chr1 141522634 141522770 -55672662 - L1Md_F LINE L1 -5804 812 675 1 1664 24 77 0 0 chr1 141523199 141523251 -55672181 + AT_rich Low_complexity Low_complexity 1 52 0 1 1664 26 82 0 0 chr1 141523291 141523352 -55672080 + AT_rich Low_complexity Low_complexity 1 61 0 1 1664 231 306 166 26 chr1 141524166 141524317 -55671115 + MLT1F1 LTR MaLR 307 478 -91 2 1664 34 119 0 0 chr1 141524383 141524585 -55670847 + AT_rich Low_complexity Low_complexity 1 202 0 2 1664 1280 222 32 14 chr1 141525846 141526129 -55669303 - Lx5 LINE L1 -2 7048 6761 2 1664 1472 171 137 13 chr1 141526190 141526504 -55668928 + ORR1B1 LTR MaLR 34 386 -8 2 1664 214 314 0 41 chr1 141527566 141527639 -55667793 + polypyrimidine Low_complexity Low_complexity 4 73 0 2 1664 4272 166 62 5 chr1 141528171 141529221 -55666211 + L1VL2 LINE L1 95 1216 -2399 2 1664 628 194 0 0 chr1 141529217 141529351 -55666081 - L1_Mm LINE L1 -1179 4704 4571 2 1664 1069 213 47 25 chr1 141529449 141529723 -55665709 + RMER6A LTR ERVK 253 532 -224 2 1664 412 121 0 0 chr1 141529810 141529876 -55665556 + L1_Mur2 LINE L1 3146 3211 -2666 2 1664 352 263 85 48 chr1 141530494 141530573 -55664859 + Lx7 LINE L1 7496 7587 -109 2 1664 207 0 0 0 chr1 141530573 141530596 -55664836 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1664 352 263 85 48 chr1 141530596 141530611 -55664821 + Lx7 LINE L1 7588 7596 -100 2 1664 540 0 0 0 chr1 141530611 141530671 -55664761 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1664 352 263 85 48 chr1 141530671 141530763 -55664669 + Lx7 LINE L1 7597 7689 -7 2 1664 381 374 50 12 chr1 141531009 141531250 -55664182 + MLT1D LTR MaLR 248 497 -8 3 1664 389 337 63 90 chr1 141531453 141531675 -55663757 - B3 SINE B2 0 216 1 3 1664 258 343 57 9 chr1 141532808 141532914 -55662518 + B1F SINE Alu 10 120 -29 3 1664 410 332 106 59 chr1 141532939 141533343 -55662089 + L1_Mur3 LINE L1 291 713 -6999 3 1664 25 0 0 0 chr1 141534012 141534037 -55661395 + AT_rich Low_complexity Low_complexity 1 25 0 3 1664 851 174 179 0 chr1 141534456 141534646 -55660786 + URR1B DNA MER1_type 1 224 -1 3 1664 446 295 8 39 chr1 141534693 141534820 -55660612 + B1_Mur2 SINE Alu 19 141 -8 3 1664 543 56 0 0 chr1 141534820 141534891 -55660541 + (CAAAA)n Simple_repeat Simple_repeat 2 72 0 3 1664 1967 285 69 48 chr1 141534943 141535643 -55659789 + L1_Mur3 LINE L1 292 1005 -6723 4 1664 288 0 0 0 chr1 141535643 141535675 -55659757 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 1664 1967 285 69 48 chr1 141535675 141535760 -55659672 + L1_Mur3 LINE L1 1006 1092 -6636 4 1664 333 130 59 98 chr1 141535787 141535889 -55659543 + Lx LINE L1 6557 6654 0 4 1664 3459 197 22 13 chr1 141536025 141536812 -55658620 + L1_Mur3 LINE L1 1207 2000 -3880 4 1664 297 0 0 0 chr1 141537271 141537304 -55658128 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1664 1271 45 0 20 chr1 141537304 141537508 -55657924 + (GA)n Simple_repeat Simple_repeat 1 200 0 4 1664 829 216 36 21 chr1 141537518 141537712 -55657720 + L1_Mur3 LINE L1 2387 2583 -3294 4 1664 12968 95 3 53 chr1 141537715 141540609 -55654823 + L1Md_F LINE L1 105 2851 -3032 4 1664 252 0 0 0 chr1 141540609 141540637 -55654795 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1664 39640 33 0 1 chr1 141540723 141546914 -55648518 - L1Md_T LINE L1 0 6582 442 4 1664 23239 24 0 0 chr1 141546914 141549664 -55645768 + L1Md_F LINE L1 2838 5586 -297 4 1664 6807 214 54 35 chr1 141549643 141549665 -55645767 + L1_Mur3 LINE L1 2561 2582 -3298 4 1664 8175 48 0 0 chr1 141549665 141550659 -55644773 + L1Md_T LINE L1 5588 6581 -1 4 1664 6807 214 54 35 chr1 141550659 141552639 -55642793 + L1_Mur3 LINE L1 2583 4600 -1280 4 1664 4076 278 44 29 chr1 141552626 141553614 -55641818 + Lx6 LINE L1 5852 6878 -582 4 1664 459 0 0 0 chr1 141553614 141553665 -55641767 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1664 4076 278 44 29 chr1 141553665 141553931 -55641501 + Lx6 LINE L1 6879 7125 -335 4 1664 1156 306 31 28 chr1 141553932 141554108 -55641324 + Lx6 LINE L1 7052 7224 -236 5 1664 1714 151 99 29 chr1 141554108 141554490 -55640942 - RLTR9E LTR ERVK 0 409 1 5 1664 1156 306 31 28 chr1 141554490 141554703 -55640729 + Lx6 LINE L1 7225 7442 -18 5 1664 662 35 0 0 chr1 141554705 141554791 -55640641 + BC1_Mm scRNA scRNA 1 86 -66 5 1664 4264 146 78 9 chr1 141554815 141555560 -55639872 + Lx LINE L1 5858 6653 -1 5 1664 358 127 28 0 chr1 141555633 141555704 -55639728 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 5 1664 26 109 0 0 chr1 141557241 141557351 -55638081 + AT_rich Low_complexity Low_complexity 1 110 0 5 1665 833 290 55 34 chr1 141557768 141557937 -55637495 - Lx9 LINE L1 -927 6717 6554 5 1665 2524 99 119 8 chr1 141557937 141558315 -55637117 + RLTR9B2 LTR ERVK 1 420 0 5 1665 833 290 55 34 chr1 141558315 141558470 -55636962 - Lx9 LINE L1 -1091 6553 6386 5 1665 225 0 0 0 chr1 141558514 141558539 -55636893 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1665 1766 269 26 37 chr1 141558605 141559413 -55636019 - Lx9 LINE L1 -1530 6114 5279 5 1665 678 274 5 27 chr1 141559426 141559610 -55635822 - Lx6 LINE L1 -31 7429 7250 6 1665 934 253 40 42 chr1 141559613 141560014 -55635418 - Lx9 LINE L1 -543 5304 4905 5 1665 575 281 35 14 chr1 141560007 141560296 -55635136 - L1_Mur3 LINE L1 -4050 1830 1536 6 1665 35219 64 6 4 chr1 141560393 141566561 -55628871 - L1Md_F2 LINE L1 0 6585 304 6 1665 244 264 11 0 chr1 141566555 141566646 -55628786 - L1_Mur3 LINE L1 -4449 1431 1340 6 1665 655 158 16 0 chr1 141566654 141566781 -55628651 - Lx LINE L1 -7 6647 6519 6 1665 287 124 0 38 chr1 141566784 141566842 -55628590 + MT2B2 LTR ERVL 535 601 0 6 1665 287 159 76 0 chr1 141567044 141567176 -55628256 + (TA)n Simple_repeat Simple_repeat 2 143 0 6 1665 22 0 0 0 chr1 141567373 141567395 -55628037 + AT_rich Low_complexity Low_complexity 1 22 0 6 1665 1801 261 13 5 chr1 141567442 141567831 -55627601 + ORR1B1 LTR MaLR 1 392 -2 6 1665 1003 99 21 0 chr1 141567996 141568138 -55627294 + B1_Mus1 SINE Alu 2 146 -2 6 1665 216 0 0 0 chr1 141568138 141568162 -55627270 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1665 572 167 29 0 chr1 141568180 141568282 -55627150 + U6 snRNA snRNA 1 105 -2 7 1665 5013 114 10 1 chr1 141568286 141569066 -55626366 + L1_Mur1 LINE L1 2653 3439 -2447 7 1665 649 292 73 46 chr1 141569075 141569294 -55626138 + Lx6 LINE L1 7186 7410 -50 7 1665 1780 227 81 30 chr1 141569309 141569399 -55626033 + Lx2B LINE L1 5348 5445 -432 7 1665 2416 117 0 3 chr1 141569399 141569760 -55625672 + L1_Mus4 LINE L1 6275 6634 -2 7 1665 4152 243 92 28 chr1 141569760 141571194 -55624238 + Lx2B LINE L1 5446 7000 0 7 1665 441 0 0 0 chr1 141571561 141571610 -55623822 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1665 2194 269 95 13 chr1 141571619 141572332 -55623100 + Lx7 LINE L1 5818 6589 -1107 7 1665 354 162 27 13 chr1 141572408 141572483 -55622949 - ETnERV2-int LTR ERVK 0 7406 7331 7 1665 304 305 169 0 chr1 141572684 141572838 -55622594 - ETnERV2-int LTR ERVK -978 6428 6249 7 1665 327 298 31 24 chr1 141572813 141572940 -55622492 - MMETn-int LTR ERVK -1241 3603 3476 7 1665 334 290 0 53 chr1 141572940 141573053 -55622379 - ETnERV2-int LTR ERVK -1199 6207 6101 7 1665 10707 177 63 56 chr1 141573067 141573926 -55621506 - RMER16-int LTR ERVK -1233 4173 3340 7 1665 3245 74 41 7 chr1 141573926 141574388 -55621044 + RLTR45 LTR ERVK 1 478 -4 8 1665 10707 195 59 65 chr1 141574388 141576825 -55618607 - RMER16-int LTR ERVK -3312 4094 1591 7 1665 5045 113 170 52 chr1 141576825 141577749 -55617683 - RLTR13D4 LTR ERVK 0 1033 1 8 1665 6314 239 51 85 chr1 141577749 141578054 -55617378 - RMER16-int LTR ERVK -5371 2035 1742 7 1665 180 0 0 0 chr1 141578054 141578074 -55617358 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1665 502 0 0 0 chr1 141578115 141578178 -55617254 - L1Md_T LINE L1 0 6582 6520 8 1665 736 150 8 8 chr1 141578178 141578312 -55617120 - RMER16-int LTR ERVK -5662 1744 1611 7 1665 265 136 7 0 chr1 141578312 141578363 -55617069 - PB1D9 SINE Alu -63 54 2 8 1665 6552 100 20 4 chr1 141578383 141579337 -55616095 - L1_Mur1 LINE L1 0 5886 4918 8 1665 2293 149 21 24 chr1 141579663 141580088 -55615344 - Lx LINE L1 0 6654 6231 8 1665 915 269 0 5 chr1 141580128 141580341 -55615091 + B3 SINE B2 5 216 0 8 1665 27 29 0 0 chr1 141580416 141580450 -55614982 + AT_rich Low_complexity Low_complexity 1 34 0 8 1665 2812 200 10 7 chr1 141580670 141581233 -55614199 - Lx2B LINE L1 -7 6969 6430 8 1665 374 127 14 0 chr1 141581259 141581330 -55614102 - Lx3A LINE L1 -10 6971 6900 9 1665 2042 262 52 127 chr1 141581337 141582289 -55613143 + RMER17B LTR ERVK 1 881 -77 9 1665 3142 143 23 18 chr1 141582376 141582931 -55612501 - Lx3_Mus LINE L1 -119 6890 6333 9 1665 4173 121 27 6 chr1 141582929 141583794 -55611638 + Lx3A LINE L1 5411 6282 -699 9 1665 922 226 41 33 chr1 141583792 141583847 -55611585 + L1_Mur2 LINE L1 3356 3411 -2466 9 1665 2859 52 57 0 chr1 141583847 141584216 -55611216 - RLTR10 LTR ERVK 0 390 1 9 1665 922 226 41 33 chr1 141584216 141584403 -55611029 + L1_Mur2 LINE L1 3412 3600 -2277 9 1665 1126 211 60 109 chr1 141584387 141584835 -55610597 - L1_Rod LINE L1 -143 5704 5279 9 1665 560 288 43 10 chr1 141584826 141585033 -55610399 - Lx6 LINE L1 -2 7458 7245 9 1665 277 257 35 9 chr1 141585032 141585146 -55610286 - L1_Rod LINE L1 -544 5303 5187 9 1665 601 303 219 39 chr1 141585275 141585732 -55609700 + MT2B2 LTR ERVL 5 543 -41 9 1665 324 70 0 0 chr1 141585751 141585794 -55609638 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1665 495 0 0 0 chr1 141585794 141585848 -55609584 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1665 438 101 0 0 chr1 141585975 141586044 -55609388 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1665 8047 225 75 19 chr1 141586376 141588909 -55606523 + MERVL_2A-int LTR ERVL 1 2675 -3086 1 1665 4151 79 12 10 chr1 141588909 141589434 -55605998 + RLTR13D1 LTR ERVK 1 527 -279 1 1665 2873 52 19 0 chr1 141589434 141589821 -55605611 - L1Md_T LINE L1 0 6582 6205 1 1665 4151 181 103 9 chr1 141589821 141590028 -55605404 + RLTR13D1 LTR ERVK 528 591 -215 1 1665 411 143 93 84 chr1 141590028 141590135 -55605297 + MERVL_2A-int LTR ERVL 2673 2780 -2981 1 1665 1530 227 23 26 chr1 141590135 141590479 -55604953 + ORR1B2 LTR MaLR 1 343 -24 1 1665 654 227 21 0 chr1 141590501 141590642 -55604790 + MERVL_2A-int LTR ERVL 2673 2816 -2669 1 1665 2153 203 28 0 chr1 141590652 141591046 -55604386 + MERVL_2A-int LTR ERVL 3026 3430 -2331 1 1665 5004 43 0 0 chr1 141591093 141591694 -55603738 + L1Md_F2 LINE L1 5970 6570 -12 1 1665 5140 279 56 11 chr1 141591694 141593255 -55602177 + MERVL_2A-int LTR ERVL 3439 5070 -415 1 1665 459 160 58 0 chr1 141593278 141593434 -55601998 + (TA)n Simple_repeat Simple_repeat 1 165 0 1 1665 32 26 0 0 chr1 141593587 141593626 -55601806 + AT_rich Low_complexity Low_complexity 1 39 0 1 1665 1735 245 16 0 chr1 141593648 141594036 -55601396 + ORR1B1 LTR MaLR 1 394 0 1 1665 228 305 65 23 chr1 141595157 141595372 -55600060 + L1MA4 LINE L1 4978 5201 -942 1 1665 217 140 17 17 chr1 141595481 141595539 -55599893 + (ATTTG)n Simple_repeat Simple_repeat 1 58 0 1 1665 434 333 67 23 chr1 141595810 141596289 -55599143 + L1MA4 LINE L1 5424 5923 -377 1 1665 456 236 46 28 chr1 141596409 141596542 -55598890 + ORR1C1 LTR MaLR 2 127 -267 1 1665 645 273 105 24 chr1 141596665 141596961 -55598471 - L1MD3 LINE L1 -325 7670 7351 1 1665 1629 225 33 33 chr1 141597166 141597585 -55597847 + MTD LTR MaLR 1 419 0 1 1665 248 234 105 11 chr1 141597595 141597690 -55597742 + MER20B DNA MER1_type 564 667 -116 1 1665 453 348 26 0 chr1 141597678 141597793 -55597639 - PB1 SINE Alu -4 123 6 1 1665 21 0 0 0 chr1 141597810 141597831 -55597601 + AT_rich Low_complexity Low_complexity 1 21 0 1 1665 423 185 55 18 chr1 141597864 141598029 -55597403 + (TA)n Simple_repeat Simple_repeat 2 172 0 1 1665 22 56 0 0 chr1 141598210 141598246 -55597186 + AT_rich Low_complexity Low_complexity 1 36 0 1 1665 23 0 0 0 chr1 141598618 141598641 -55596791 + AT_rich Low_complexity Low_complexity 1 23 0 1 1665 255 333 8 16 chr1 141599527 141599649 -55595783 + L1MEf LINE L1 1422 1542 -4658 1 1665 1845 201 20 5 chr1 141599812 141600207 -55595225 + Lx2B LINE L1 6007 6407 -593 1 1665 2943 137 46 64 chr1 141600214 141600805 -55594627 - L1_Mur2 LINE L1 -1878 3999 3420 1 1665 574 127 0 60 chr1 141600812 141600929 -55594503 + L1_Mus4 LINE L1 6524 6633 -3 1 1665 1170 282 95 22 chr1 141600938 141601308 -55594124 - Lx9 LINE L1 -907 6737 6341 1 1665 236 241 0 0 chr1 141601461 141601515 -55593917 + Lx5 LINE L1 1324 1377 -6249 1 1665 23324 153 24 39 chr1 141601485 141601864 -55593568 + Lx5 LINE L1 2127 2589 -3939 1 1665 383 0 0 21 chr1 141601864 141601912 -55593520 + (CAAT)n Simple_repeat Simple_repeat 3 49 0 1 1665 23324 143 22 36 chr1 141601912 141604341 -55591091 + Lx5 LINE L1 2590 4993 -1535 1 1665 890 119 75 0 chr1 141604341 141604475 -55590957 + B1_Mus1 SINE Alu 5 148 0 1 1665 23324 155 36 34 chr1 141604475 141606260 -55589172 + Lx5 LINE L1 4994 6786 -906 1 1665 26 0 0 0 chr1 141606264 141606290 -55589142 + AT_rich Low_complexity Low_complexity 1 26 0 1 1665 28077 127 49 26 chr1 141606569 141609892 -55585540 + L1_Mus1 LINE L1 380 3723 -2160 1 1665 889 119 7 7 chr1 141609892 141610027 -55585405 + B1_Mus2 SINE Alu 1 135 -12 1 1665 287 65 22 0 chr1 141610029 141610075 -55585357 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1665 28077 93 55 7 chr1 141610075 141612769 -55582663 + L1_Mus1 LINE L1 3724 6566 -1 1 1665 33865 43 1 2 chr1 141612913 141618777 -55576655 + L1Md_T LINE L1 1 5589 -297 1 1665 8803 17 0 1 chr1 141618777 141619774 -55575658 + L1Md_T LINE L1 5590 6585 0 1 1665 1923 265 6 12 chr1 141620187 141620683 -55574749 + Lx6 LINE L1 6912 7404 -56 1 1665 2122 174 118 11 chr1 141620707 141621338 -55574094 + Lx4B LINE L1 5359 6037 -1021 1 1665 3015 11 5 90 chr1 141621345 141621746 -55573686 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1665 6793 81 109 91 chr1 141621746 141623028 -55572404 + IAPEz-int LTR ERVK 8 1313 -5168 1 1665 27491 20 1 1 chr1 141623027 141626288 -55569144 + IAPEz-int LTR ERVK 3210 6468 -13 1 1665 362 284 31 52 chr1 141626288 141626301 -55569131 + Lx4B LINE L1 6028 6040 -1010 1 1665 3015 11 5 90 chr1 141626301 141626702 -55568730 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1665 505 227 159 19 chr1 141626702 141626904 -55568528 + Lx4B LINE L1 6041 6271 -702 1 1665 35 41 0 0 chr1 141626929 141626978 -55568454 + AT_rich Low_complexity Low_complexity 1 49 0 1 1665 767 257 22 18 chr1 141627058 141627284 -55568148 + Lx6 LINE L1 6273 6499 -961 1 1665 915 231 59 39 chr1 141627286 141627593 -55567839 + Lx7 LINE L1 7380 7692 -4 1 1665 199 344 15 83 chr1 141627811 141627944 -55567488 - MER5A DNA MER1_type -62 127 4 1 1665 21 36 0 0 chr1 141629240 141629268 -55566164 + AT_rich Low_complexity Low_complexity 1 28 0 1 1665 21 0 0 0 chr1 141630353 141630374 -55565058 + AT_rich Low_complexity Low_complexity 1 21 0 1 1665 283 170 19 0 chr1 141630518 141630571 -55564861 - MTEa LTR MaLR -12 367 314 1 1665 371 237 0 9 chr1 141630572 141630687 -55564745 + GA-rich Low_complexity Low_complexity 4 117 0 1 1665 678 335 132 0 chr1 141630704 141630955 -55564477 - MTEa LTR MaLR -95 284 1 1 1665 308 286 140 77 chr1 141631142 141631377 -55564055 + RMER21A LTR ERV1 435 684 -263 1 1665 240 296 0 182 chr1 141631446 141631545 -55563887 + RMER21A LTR ERV1 789 869 -78 1 1665 24 53 0 0 chr1 141631640 141631678 -55563754 + AT_rich Low_complexity Low_complexity 1 38 0 1 1665 609 349 5 5 chr1 141631702 141631892 -55563540 - MTEa LTR MaLR -189 190 1 1 1665 440 325 24 28 chr1 141632885 141633176 -55562256 + Lx9 LINE L1 7205 7494 -150 1 1665 22 35 0 0 chr1 141637314 141637343 -55558089 + AT_rich Low_complexity Low_complexity 1 29 0 1 1665 233 127 36 18 chr1 141637764 141637820 -55557612 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 1 1665 906 294 99 3 chr1 141637923 141638278 -55557154 + Lx5 LINE L1 6063 6451 -599 1 1665 948 249 32 35 chr1 141638294 141638640 -55556792 + Lx6 LINE L1 5687 6031 -1429 1 1665 1394 287 29 5 chr1 141638636 141639056 -55556376 + Lx6 LINE L1 7005 7434 -26 1 1665 183 146 0 0 chr1 141639061 141639102 -55556330 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1665 351 0 0 0 chr1 141639594 141639633 -55555799 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1665 1775 216 22 97 chr1 141639749 141640201 -55555231 + RMER15 LTR ERVL 3 420 -155 1 1665 31296 75 4 4 chr1 141640203 141645521 -55549911 + L1Md_F2 LINE L1 266 5585 -298 1 1665 8033 48 2 1 chr1 141645522 141646516 -55548916 + L1Md_F2 LINE L1 5587 6581 -1 1 1665 297 0 0 0 chr1 141647250 141647283 -55548149 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1665 493 240 10 0 chr1 141647308 141647412 -55548020 + RMER15 LTR ERVL 468 572 -3 1 1665 24 32 0 0 chr1 141647421 141647452 -55547980 + AT_rich Low_complexity Low_complexity 1 31 0 1 1665 463 276 91 83 chr1 141647707 141647948 -55547484 + RMER21B LTR ERV1 254 496 -346 1 1665 254 267 206 83 chr1 141648194 141648374 -55547058 + RMER21B LTR ERV1 483 684 -263 1 1665 21 57 0 0 chr1 141648626 141648661 -55546771 + AT_rich Low_complexity Low_complexity 1 35 0 1 1665 915 162 47 31 chr1 141648710 141648901 -55546531 - B2_Mm2 SINE B2 0 195 2 1 1665 22 0 0 0 chr1 141649178 141649200 -55546232 + AT_rich Low_complexity Low_complexity 1 22 0 1 1665 551 331 31 37 chr1 141649210 141649373 -55546059 + RSINE1 SINE B4 4 165 0 1 1665 1926 168 17 3 chr1 141651552 141651904 -55543528 + Lx2 LINE L1 6270 6626 -371 1 1665 682 271 25 29 chr1 141651904 141652219 -55543213 - L1_Mur3 LINE L1 -6531 1181 868 1 1665 28 71 0 0 chr1 141652625 141652681 -55542751 + AT_rich Low_complexity Low_complexity 1 56 0 1 1665 3451 245 55 21 chr1 141652866 141653174 -55542258 + Lx5 LINE L1 1204 1531 -4349 1 1665 1654 175 69 0 chr1 141653174 141653477 -55541955 + ORR1A3 LTR MaLR 3 326 0 1 1665 3451 245 55 21 chr1 141653477 141654476 -55540956 + Lx5 LINE L1 1532 2556 -3324 1 1665 3667 210 44 8 chr1 141654597 141655507 -55539925 + Lx5 LINE L1 4907 5849 -28 1 1665 632 216 25 116 chr1 141655508 141655707 -55539725 + Lx5 LINE L1 6153 6333 -717 1 1665 3400 93 21 2 chr1 141655709 141656184 -55539248 - L1_Mus3 LINE L1 -6 6632 6149 1 1665 3054 164 3 2 chr1 141656184 141656752 -55538680 + L1_Mm LINE L1 4645 5213 -670 1 1665 1190 195 4 0 chr1 141656740 141656966 -55538466 + Lx5 LINE L1 6324 6550 -500 1 1665 1939 289 26 19 chr1 141656958 141657572 -55537860 + Lx5 LINE L1 6415 7032 -18 1 1665 195 42 0 0 chr1 141657573 141657597 -55537835 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1 1665 525 254 13 74 chr1 141657621 141657851 -55537581 + L1_Mur3 LINE L1 4683 4898 -982 1 1665 841 188 0 0 chr1 141658257 141658417 -55537015 + L1VL4 LINE L1 510 669 -5633 1 1665 7606 122 6 5 chr1 141658416 141659114 -55536318 - L1_Mm LINE L1 -127 5756 5059 1 1665 189 0 0 0 chr1 141659114 141659135 -55536297 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1 1665 7606 122 6 5 chr1 141659135 141659663 -55535769 - L1_Mm LINE L1 -825 5058 4529 1 1665 8776 195 34 19 chr1 141659658 141660550 -55534882 + L1_Mur2 LINE L1 3697 4623 -1254 1 1665 267 54 0 0 chr1 141660550 141660587 -55534845 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 1 1665 8776 195 34 19 chr1 141660587 141661816 -55533616 + L1_Mur2 LINE L1 4624 5850 -27 1 1665 5865 123 36 11 chr1 141661801 141662349 -55533083 + Lx3_Mus LINE L1 1890 2464 -3422 1 1665 3638 141 3 2 chr1 141662349 141662926 -55532506 + L1_Mus4 LINE L1 6055 6632 -4 1 1665 5865 123 36 11 chr1 141662926 141663437 -55531995 + Lx3_Mus LINE L1 2465 2975 -2911 1 1665 5848 122 1 23 chr1 141663437 141663825 -55531607 + Lx3_Mus LINE L1 4892 5271 -615 1 1665 324 0 0 0 chr1 141663825 141663861 -55531571 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1 1665 5848 134 17 16 chr1 141663861 141665123 -55530309 + Lx3_Mus LINE L1 5272 6542 -467 1 1665 5378 188 33 26 chr1 141665103 141666309 -55529123 + Lx2B LINE L1 5784 6997 -3 1 1665 1472 227 11 20 chr1 141666313 141666728 -55528704 + L1VL2 LINE L1 202 632 -5790 1 1665 6217 75 8 20 chr1 141666734 141667612 -55527820 + RLTR13A2 LTR ERVK 92 958 0 1 1665 2692 136 27 25 chr1 141667613 141668095 -55527337 + L1VL2 LINE L1 623 1105 -5313 1 1665 1432 310 50 7 chr1 141668131 141668930 -55526502 + Lx6 LINE L1 6455 7434 -26 1 1665 32 26 0 0 chr1 141669519 141669558 -55525874 + AT_rich Low_complexity Low_complexity 1 39 0 1 1665 25 0 0 0 chr1 141670010 141670035 -55525397 + AT_rich Low_complexity Low_complexity 1 25 0 1 1665 24 0 0 0 chr1 141671252 141671276 -55524156 + AT_rich Low_complexity Low_complexity 1 24 0 1 1665 14280 61 1 0 chr1 141672176 141674007 -55521425 + L1Md_F2 LINE L1 3754 5586 -297 1 1665 7820 62 2 1 chr1 141674007 141674990 -55520442 + L1Md_F2 LINE L1 5587 6570 -12 1 1665 251 154 0 19 chr1 141674991 141675044 -55520388 + Lx6 LINE L1 7390 7441 -19 1 1665 4455 155 27 8 chr1 141675044 141675825 -55519607 + Lx LINE L1 5858 6653 -1 1 1665 229 135 39 0 chr1 141675897 141675949 -55519483 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1 1665 364 250 76 32 chr1 141676661 141676818 -55518614 + Lx9 LINE L1 7428 7591 -53 1 1665 25 90 0 0 chr1 141677538 141677605 -55517827 + AT_rich Low_complexity Low_complexity 1 67 0 1 1665 837 297 51 19 chr1 141678026 141678182 -55517250 - Lx9 LINE L1 -937 6707 6554 1 1665 2541 96 122 8 chr1 141678182 141678559 -55516873 + RLTR9B2 LTR ERVK 1 420 0 1 1665 837 297 51 19 chr1 141678559 141678714 -55516718 - Lx9 LINE L1 -1091 6553 6386 1 1665 1635 266 21 38 chr1 141678773 141679521 -55515911 - Lx9 LINE L1 -1597 6047 5279 1 1665 535 305 44 29 chr1 141679512 141679718 -55515714 - Lx6 LINE L1 -2 7458 7250 1 1665 680 259 29 22 chr1 141679722 141679998 -55515434 - Lx9 LINE L1 -544 5303 5026 1 1665 1857 121 81 10 chr1 141679998 141680307 -55515125 + IAPEY3_LTR LTR ERVK 1 331 -1 2 1665 2306 118 77 25 chr1 141680307 141680699 -55514733 + IAPEY3-int LTR ERVK 3 414 -7266 2 1665 3475 65 9 0 chr1 141680693 141681142 -55514290 + IAPEY3-int LTR ERVK 7228 7680 0 2 1665 1722 134 84 0 chr1 141681150 141681448 -55513984 + IAPEY2_LTR LTR ERVK 35 357 0 2 1665 417 231 40 32 chr1 141681450 141681575 -55513857 - Lx9 LINE L1 -818 5029 4904 1 1665 629 281 89 31 chr1 141681574 141682032 -55513400 - L1_Mur3 LINE L1 -4050 1830 1346 2 1665 604 173 16 0 chr1 141682041 141682168 -55513264 - Lx LINE L1 -7 6647 6519 2 1665 209 185 77 0 chr1 141682399 141682464 -55512968 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1665 233 197 16 0 chr1 141682474 141682535 -55512897 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 2 1665 22 0 0 0 chr1 141682727 141682749 -55512683 + AT_rich Low_complexity Low_complexity 1 22 0 2 1665 1740 264 15 13 chr1 141682796 141683187 -55512245 + ORR1B1 LTR MaLR 1 392 -2 2 1665 1021 93 7 0 chr1 141683353 141683492 -55511940 + B1_Mus1 SINE Alu 2 141 -7 2 1665 459 0 0 0 chr1 141683493 141683544 -55511888 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 1665 595 157 29 0 chr1 141683559 141683661 -55511771 + U6 snRNA snRNA 1 105 -2 2 1665 4919 119 6 4 chr1 141683665 141684452 -55510980 + L1_Mur1 LINE L1 2653 3441 -2445 2 1665 697 286 68 45 chr1 141684459 141684679 -55510753 + Lx6 LINE L1 7186 7410 -50 2 1665 1931 229 62 6 chr1 141684694 141684784 -55510648 + Lx2B LINE L1 5348 5448 -429 2 1665 2340 122 0 3 chr1 141684784 141685145 -55510287 + L1_Mus4 LINE L1 6275 6634 -2 2 1665 4346 239 88 18 chr1 141685145 141686578 -55508854 + Lx2B LINE L1 5449 7000 0 2 1665 405 0 0 0 chr1 141686945 141686990 -55508442 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1665 2037 269 114 11 chr1 141686999 141687153 -55508279 + Lx7 LINE L1 5818 5970 -1726 2 1665 516 32 0 0 chr1 141687153 141687215 -55508217 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1665 2037 269 114 11 chr1 141687215 141687760 -55507672 + Lx7 LINE L1 5971 6588 -1108 2 1665 383 149 27 13 chr1 141687835 141687910 -55507522 - ETnERV2-int LTR ERVK 0 7406 7331 2 1665 304 305 169 0 chr1 141688111 141688265 -55507167 - ETnERV2-int LTR ERVK -978 6428 6249 2 1665 316 280 33 25 chr1 141688240 141688361 -55507071 - MMETn-int LTR ERVK -1241 3603 3482 2 1665 334 290 0 53 chr1 141688367 141688480 -55506952 - ETnERV2-int LTR ERVK -1199 6207 6101 2 208 10648 176 64 57 chr1 141688494 141689363 -55506069 - RMER16-int LTR ERVK -1233 4173 3339 2 1666 3259 82 39 4 chr1 141689363 141689829 -55505603 + RLTR45 LTR ERVK 1 482 0 2 1666 10648 192 60 64 chr1 141689829 141692255 -55503177 - RMER16-int LTR ERVK -3312 4094 1591 2 1666 5133 108 170 52 chr1 141692255 141693179 -55502253 - RLTR13D4 LTR ERVK 0 1033 1 2 1666 7165 229 52 81 chr1 141693179 141693615 -55501817 - RMER16-int LTR ERVK -5371 2035 1611 2 1666 236 235 39 0 chr1 141693615 141693666 -55501766 - B1F1 SINE Alu -95 54 2 2 1666 6560 99 20 4 chr1 141693686 141694640 -55500792 - L1_Mur1 LINE L1 0 5886 4918 2 1666 2374 151 14 23 chr1 141694969 141695397 -55500035 - Lx LINE L1 0 6654 6231 2 1666 840 302 0 5 chr1 141695437 141695650 -55499782 + B3 SINE B2 5 216 0 2 1666 2601 211 33 8 chr1 141695981 141696533 -55498899 - Lx2B LINE L1 -7 6969 6430 2 1666 398 143 0 0 chr1 141696554 141696624 -55498808 - Lx3A LINE L1 -6 6975 6906 2 1666 1454 264 122 130 chr1 141696640 141697532 -55497900 + RMER17B LTR ERVK 1 885 -73 2 1666 3161 158 21 14 chr1 141697587 141698158 -55497274 - Lx3_Mus LINE L1 -102 6907 6333 2 1666 4161 130 29 12 chr1 141698156 141699020 -55496412 + Lx3A LINE L1 5411 6282 -699 2 1666 953 245 42 0 chr1 141699017 141699254 -55496178 + L1_Mur3 LINE L1 3356 3602 -2278 2 1666 1153 212 51 95 chr1 141699248 141699680 -55495752 - L1_Rod LINE L1 -156 5691 5279 2 1666 440 301 75 10 chr1 141699671 141699872 -55495560 - Lx6 LINE L1 -2 7458 7245 2 1666 260 216 28 56 chr1 141699874 141699982 -55495450 - L1M LINE L1 -942 5358 5254 2 1666 283 281 57 19 chr1 141700109 141700214 -55495218 + MT2B LTR ERVL 1 109 -424 2 1666 741 275 90 19 chr1 141700307 141700563 -55494869 + MT2B LTR ERVL 273 546 -55 2 1666 591 120 0 0 chr1 141700567 141700675 -55494757 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1666 492 18 0 0 chr1 141701079 141701136 -55494296 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1666 7561 248 65 12 chr1 141701176 141703272 -55492160 + MERVL_2A-int LTR ERVL 1 2272 -3489 2 1666 4261 80 0 2 chr1 141703288 141703849 -55491583 - L1_Mus1 LINE L1 0 6567 6008 2 1666 491 248 50 21 chr1 141703919 141704059 -55491373 + MERVL_2A-int LTR ERVL 2673 2816 -2669 2 1666 6495 242 43 8 chr1 141704069 141706129 -55489303 + MERVL_2A-int LTR ERVL 3026 5186 -575 2 1666 224 207 49 8 chr1 141706139 141706261 -55489171 + (TA)n Simple_repeat Simple_repeat 1 127 0 2 1666 42 65 0 0 chr1 141706377 141706454 -55488978 + AT_rich Low_complexity Low_complexity 1 77 0 2 1666 957 226 331 0 chr1 141706476 141706772 -55488660 + ORR1B1 LTR MaLR 1 394 0 2 1666 404 360 81 20 chr1 141707743 141708100 -55487332 + L1M2 LINE L1 4823 5201 -942 2 1666 231 88 0 0 chr1 141708228 141708262 -55487170 + (ATTTG)n Simple_repeat Simple_repeat 3 36 0 2 1666 250 314 102 39 chr1 141708544 141709009 -55486423 + L1M2 LINE L1 5425 5917 -395 2 1666 1490 241 47 80 chr1 141709137 141709273 -55486159 + ORR1C1 LTR MaLR 5 118 -260 2 1666 1744 46 0 0 chr1 141709273 141709489 -55485943 - L1Md_T LINE L1 0 6582 6367 2 1666 1490 241 47 80 chr1 141709489 141709739 -55485693 + ORR1C1 LTR MaLR 119 378 0 2 1666 320 360 136 27 chr1 141710952 141711358 -55484074 + L1MDa LINE L1 1602 2051 -4582 2 1666 900 212 9 22 chr1 141711454 141711685 -55483747 + Lx2B LINE L1 6006 6233 -767 2 1666 9316 130 18 11 chr1 141711680 141712612 -55482820 + Lx3A LINE L1 4344 5263 -623 2 1666 333 0 0 0 chr1 141712612 141712649 -55482783 + (CCA)n Simple_repeat Simple_repeat 1 37 0 2 1666 9316 134 18 12 chr1 141712649 141713871 -55481561 + Lx3A LINE L1 5264 6503 -478 2 1666 5829 176 37 27 chr1 141713871 141715074 -55480358 + Lx2B LINE L1 5784 6997 -3 2 1666 4206 190 27 28 chr1 141715078 141715978 -55479454 + L1VL2 LINE L1 418 1316 -4570 2 1666 1448 300 61 9 chr1 141715964 141716645 -55478787 + Lx6 LINE L1 6455 7460 0 2 1666 26 30 0 0 chr1 141717222 141717255 -55478177 + AT_rich Low_complexity Low_complexity 1 33 0 2 1666 24 0 0 0 chr1 141717705 141717729 -55477703 + AT_rich Low_complexity Low_complexity 1 24 0 2 1666 21 36 0 0 chr1 141718480 141718508 -55476924 + AT_rich Low_complexity Low_complexity 1 28 0 2 1666 24 0 0 0 chr1 141718947 141718971 -55476461 + AT_rich Low_complexity Low_complexity 1 24 0 2 1666 436 238 49 0 chr1 141720551 141720694 -55474738 + L1_Mur2 LINE L1 1625 1774 -4106 2 1666 2304 114 27 27 chr1 141720916 141720990 -55474442 + L1Md_F2 LINE L1 5513 5586 -297 2 1666 8548 28 0 0 chr1 141720990 141721985 -55473447 + L1Md_T LINE L1 5587 6581 -1 2 1666 2304 114 27 27 chr1 141721985 141722045 -55473387 + L1Md_F2 LINE L1 5587 5648 -235 2 1666 4358 70 0 12 chr1 141722045 141722625 -55472807 - L1Md_F2 LINE L1 -12 6570 5998 2 1666 3097 35 0 0 chr1 141722625 141722994 -55472438 + L1Md_F2 LINE L1 5649 6017 -565 2 1666 3485 210 43 173 chr1 141722992 141724738 -55470694 + L1_Mur2 LINE L1 1758 3276 -2601 2 1666 1728 241 17 28 chr1 141724755 141725119 -55470313 + Lx5 LINE L1 6455 6876 -584 2 1666 3810 158 32 18 chr1 141725119 141725860 -55469572 + RMER6A LTR ERVK 3 754 -2 2 1666 1728 316 36 24 chr1 141725860 141726338 -55469094 + Lx5 LINE L1 6561 7047 -3 2 1666 236 302 79 0 chr1 141727019 141727082 -55468350 + MLT1F2 LTR MaLR 218 285 -275 2 1666 22 35 0 0 chr1 141727284 141727313 -55468119 + AT_rich Low_complexity Low_complexity 1 29 0 2 1666 29 47 0 0 chr1 141727412 141727455 -55467977 + AT_rich Low_complexity Low_complexity 1 43 0 2 1666 22 35 0 0 chr1 141728684 141728713 -55466719 + AT_rich Low_complexity Low_complexity 1 29 0 2 1666 1182 219 39 28 chr1 141728912 141729198 -55466234 - Lx5 LINE L1 -2 7048 6760 2 1666 1345 145 131 54 chr1 141729258 141729556 -55465876 + ORR1A4 LTR MaLR 1 321 -8 2 1666 519 64 0 13 chr1 141730101 141730180 -55465252 + L1Md_F2 LINE L1 6495 6572 -10 2 1666 224 269 0 56 chr1 141730811 141730882 -55464550 + CT-rich Low_complexity Low_complexity 3 69 0 2 1666 290 330 199 19 chr1 141731333 141731549 -55463883 + MLT1F1 LTR MaLR 42 296 -273 2 1666 1833 158 104 8 chr1 141731559 141731916 -55463516 + RLTR9D LTR ERVK 1 391 -12 2 1666 619 258 36 54 chr1 141731925 141732312 -55463120 + ETnERV2-int LTR ERVK 4 449 -2865 2 1666 5254 107 1 0 chr1 141732320 141733066 -55462366 + L1Md_F2 LINE L1 346 1092 -5524 2 1666 7668 69 0 0 chr1 141733064 141734058 -55461374 + L1Md_F2 LINE L1 4593 5586 -297 2 1666 8001 52 2 0 chr1 141734058 141735048 -55460384 + L1Md_F2 LINE L1 5587 6578 -4 2 1666 13807 237 33 23 chr1 141735050 141740397 -55455035 + ETnERV2-int LTR ERVK 443 6425 -981 2 1666 337 113 0 36 chr1 141740609 141740664 -55454768 + ETnERV2-int LTR ERVK 7331 7383 -23 2 1666 2104 136 68 16 chr1 141740684 141741064 -55454368 + RLTR9D LTR ERVK 1 400 -3 2 1666 977 131 0 0 chr1 141741240 141741385 -55454047 + ETnERV2-int LTR ERVK 5512 5656 -1750 2 1666 22 35 0 0 chr1 141741391 141741420 -55454012 + AT_rich Low_complexity Low_complexity 1 29 0 2 1666 60 0 0 0 chr1 141741472 141741532 -55453900 + AT_rich Low_complexity Low_complexity 1 60 0 2 1666 4703 39 14 3 chr1 141742109 141742694 -55452738 - L1Md_F3 LINE L1 0 6584 5994 2 1666 1180 209 38 15 chr1 141743633 141743900 -55451532 - Lx5 LINE L1 -2 7048 6776 2 1666 398 125 27 27 chr1 141743982 141744056 -55451376 + ORR1B1 LTR MaLR 41 114 -280 2 1666 30038 74 5 68 chr1 141745223 141750530 -55444902 + L1Md_F2 LINE L1 659 5585 -298 2 1666 7424 72 2 3 chr1 141750531 141751516 -55443916 + L1Md_F2 LINE L1 5587 6570 -12 2 1666 1989 293 38 45 chr1 141751522 141751641 -55443791 + Lx6 LINE L1 6758 6878 -582 2 1666 522 31 0 0 chr1 141751641 141751705 -55443727 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1666 1989 293 38 45 chr1 141751705 141752274 -55443158 + Lx6 LINE L1 6879 7441 -19 2 1666 4420 158 26 8 chr1 141752274 141753056 -55442376 + Lx LINE L1 5858 6653 -1 2 1666 220 137 39 0 chr1 141753128 141753179 -55442253 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2 1666 366 255 104 26 chr1 141753893 141754086 -55441346 + Lx9 LINE L1 7428 7635 -9 2 1666 28 79 0 0 chr1 141754959 141755022 -55440410 + AT_rich Low_complexity Low_complexity 1 63 0 2 1666 987 266 70 3 chr1 141755496 141755794 -55439638 - Lx9 LINE L1 -941 6703 6386 2 1666 513 0 0 0 chr1 141755838 141755895 -55439537 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1666 1366 254 20 14 chr1 141755963 141756438 -55438994 - Lx9 LINE L1 -1553 6091 5584 2 1666 4773 252 52 31 chr1 141756440 141757481 -55437951 + MERVL_2A-int LTR ERVL 3861 4958 -803 2 1666 375 41 0 0 chr1 141757481 141757530 -55437902 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1666 4773 252 52 31 chr1 141757530 141757790 -55437642 + MERVL_2A-int LTR ERVL 4959 5190 -571 2 1666 351 44 0 0 chr1 141757793 141757838 -55437594 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1666 292 228 18 0 chr1 141757838 141757952 -55437480 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 1666 1641 244 23 18 chr1 141758170 141758562 -55436870 + ORR1B1 LTR MaLR 1 394 0 2 1666 2219 93 3 0 chr1 141759185 141759497 -55435935 - L1_Mus2 LINE L1 0 6566 6254 2 1666 696 316 104 13 chr1 141759812 141760523 -55434909 + L1MA5 LINE L1 4351 5126 -1017 2 1666 209 146 21 0 chr1 141760719 141760767 -55434665 + (ATTTG)n Simple_repeat Simple_repeat 1 49 0 2 1666 275 305 110 30 chr1 141761100 141761504 -55433928 + L1MA5 LINE L1 5488 5925 -375 2 1666 370 286 47 9 chr1 141761620 141761726 -55433706 + ORR1C1 LTR MaLR 6 115 -263 2 1666 896 199 153 1 chr1 141761694 141761937 -55433495 + ORR1C1 LTR MaLR 52 378 0 2 1666 2164 94 3 57 chr1 141761988 141762339 -55433093 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 1666 23 54 0 0 chr1 141762400 141762437 -55432995 + AT_rich Low_complexity Low_complexity 1 37 0 3 1666 305 321 172 16 chr1 141763515 141763835 -55431597 + L1MEf LINE L1 1173 1542 -4658 3 1666 3932 245 22 22 chr1 141764001 141764995 -55430437 + Lx2B LINE L1 6007 7000 0 3 1666 225 288 0 52 chr1 141765416 141765493 -55429939 + L1_Mur1 LINE L1 678 750 -6232 3 1666 238 300 14 54 chr1 141765492 141765640 -55429792 + Lx3B LINE L1 120 261 -6723 3 1666 11885 174 148 23 chr1 141765644 141769632 -55425800 + Lx3B LINE L1 518 5310 -576 3 1666 378 0 0 0 chr1 141769632 141769674 -55425758 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3 1666 11885 128 70 3 chr1 141769674 141770413 -55425019 + Lx3B LINE L1 5311 6094 -879 3 1666 204 40 0 0 chr1 141770643 141770668 -55424764 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3 1666 967 137 0 0 chr1 141770668 141770805 -55424627 - B1_Mm SINE Alu -9 138 2 3 1666 260 264 0 0 chr1 141771322 141771375 -55424057 + Lx6 LINE L1 6662 6714 -746 3 1666 1901 290 8 10 chr1 141771445 141771939 -55423493 + Lx6 LINE L1 6912 7404 -56 3 1666 5067 212 53 12 chr1 141771962 141773502 -55421930 + Lx2B LINE L1 5359 7058 0 3 1666 344 266 300 6 chr1 141773823 141774170 -55421262 + Lx7 LINE L1 5711 6157 -1539 3 1666 22 0 0 0 chr1 141775278 141775300 -55420132 + AT_rich Low_complexity Low_complexity 1 22 0 3 1666 25 0 0 0 chr1 141775413 141775438 -55419994 + AT_rich Low_complexity Low_complexity 1 25 0 3 1666 21 36 0 0 chr1 141775474 141775502 -55419930 + AT_rich Low_complexity Low_complexity 1 28 0 3 1666 330 172 15 30 chr1 141775684 141775750 -55419682 - MTEb LTR MaLR 0 379 315 3 1666 195 239 0 0 chr1 141775786 141775853 -55419579 + GA-rich Low_complexity Low_complexity 4 70 0 3 1666 590 359 92 0 chr1 141775870 141776120 -55419312 - MTEb LTR MaLR -106 273 1 3 1666 651 303 65 52 chr1 141777146 141777546 -55417886 + Lx9 LINE L1 7205 7609 -35 3 1666 1062 86 0 0 chr1 141777675 141777815 -55417617 + B1_Mus1 SINE Alu 3 142 -6 3 1666 269 0 0 53 chr1 141777816 141777854 -55417578 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3 1666 932 321 51 35 chr1 141781590 141781909 -55413523 + Lx5 LINE L1 6077 6408 -642 3 1666 411 150 0 0 chr1 141781909 141781989 -55413443 - L1Md_F2 LINE L1 0 6582 6503 3 1666 932 321 51 35 chr1 141781989 141782040 -55413392 + Lx5 LINE L1 6409 6453 -597 3 1666 1183 240 28 39 chr1 141782054 141782414 -55413018 + Lx6 LINE L1 5687 6042 -1418 3 1666 1548 265 43 5 chr1 141782399 141782813 -55412619 + Lx6 LINE L1 7005 7434 -26 3 1666 396 0 0 0 chr1 141783335 141783379 -55412053 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1666 1908 213 21 87 chr1 141783495 141783967 -55411465 + RMER15 LTR ERVL 3 443 -132 3 1666 547 216 9 0 chr1 141784556 141784667 -55410765 + RMER15 LTR ERVL 461 572 -3 3 1666 30 27 0 0 chr1 141784676 141784713 -55410719 + AT_rich Low_complexity Low_complexity 1 37 0 3 1666 459 286 51 79 chr1 141784949 141785203 -55410229 + RMER21B LTR ERV1 249 495 -347 3 1666 390 69 0 0 chr1 141785377 141785435 -55409997 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 3 1666 230 234 0 41 chr1 141785675 141785724 -55409708 + RMER21B LTR ERV1 789 835 -112 3 1666 911 158 58 42 chr1 141785948 141786139 -55409293 - B2_Mm2 SINE B2 0 195 2 3 1666 212 394 42 11 chr1 141786322 141786417 -55409015 - B1F1 SINE Alu -48 101 4 3 1666 480 346 38 13 chr1 141786447 141786605 -55408827 + RSINE1 SINE B4 4 165 0 3 1666 855 108 0 0 chr1 141788593 141788722 -55406710 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 3 1666 1063 140 0 0 chr1 141788736 141788893 -55406539 - B2_Mm2 SINE B2 -37 158 2 3 1666 2209 144 0 6 chr1 141790061 141790403 -55405029 + Lx2 LINE L1 6287 6626 -371 3 1666 675 305 4 4 chr1 141790404 141790667 -55404765 - L1_Mur3 LINE L1 -6532 1180 918 3 1666 25 83 0 0 chr1 141791124 141791184 -55404248 + AT_rich Low_complexity Low_complexity 1 60 0 3 1666 1005 213 50 11 chr1 141791317 141791673 -55403759 + Lx5 LINE L1 1162 1528 -4349 3 1666 1737 165 63 0 chr1 141791680 141791983 -55403449 + ORR1A2 LTR MaLR 6 327 0 3 1666 2384 230 234 36 chr1 141791985 141792846 -55402586 + Lx5 LINE L1 1531 2641 -3239 3 1666 303 93 0 0 chr1 141792846 141792889 -55402543 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1666 2384 230 234 36 chr1 141792889 141793222 -55402210 + Lx5 LINE L1 2642 2961 -2919 3 1666 4090 213 26 7 chr1 141793224 141794147 -55401285 + Lx5 LINE L1 4910 5850 -27 3 1666 784 265 11 6 chr1 141794145 141794327 -55401105 + Lx5 LINE L1 6151 6333 -717 3 1666 3065 112 27 8 chr1 141794327 141794802 -55400630 - L1_Mus3 LINE L1 -6 6632 6149 3 1666 3349 165 0 0 chr1 141794802 141795371 -55400061 + L1_Mm LINE L1 4645 5213 -670 3 1666 1156 252 119 6 chr1 141795359 141795994 -55399438 + Lx5 LINE L1 6324 7047 -3 3 1666 641 257 24 34 chr1 141796024 141796233 -55399199 + L1_Mur3 LINE L1 4678 4884 -996 3 1666 269 184 0 0 chr1 141796468 141796517 -55398915 + L1VL2 LINE L1 521 569 -5766 3 1666 1095 186 1 116 chr1 141796632 141796961 -55398471 + Lx2B LINE L1 5589 5865 -1135 3 1666 13746 115 16 6 chr1 141796932 141797502 -55397930 + L1_Mur1 LINE L1 1890 2469 -3417 3 1666 3768 128 3 0 chr1 141797502 141798081 -55397351 + L1_Mus4 LINE L1 6055 6635 -1 3 1666 13746 115 16 6 chr1 141798081 141799721 -55395711 + L1_Mur1 LINE L1 2470 4123 -1763 3 1666 980 91 0 0 chr1 141799718 141799850 -55395582 + Lx3_Mus LINE L1 6391 6522 -487 3 1666 5549 187 32 20 chr1 141799850 141801049 -55394383 + Lx2B LINE L1 5784 6997 -3 3 1666 4517 190 15 20 chr1 141801057 141801965 -55393467 + L1VL2 LINE L1 119 1022 -5313 3 1666 1428 283 130 8 chr1 141801957 141802824 -55392608 + Lx6 LINE L1 6269 7460 0 3 1666 26 30 0 0 chr1 141803401 141803434 -55391998 + AT_rich Low_complexity Low_complexity 1 33 0 3 1666 24 0 0 0 chr1 141803884 141803908 -55391524 + AT_rich Low_complexity Low_complexity 1 24 0 3 1666 35649 48 0 3 chr1 141803911 141809581 -55385851 + L1Md_T LINE L1 1 5589 -297 3 1666 8421 33 0 0 chr1 141809581 141810577 -55384855 + L1Md_T LINE L1 5590 6585 0 3 1666 324 0 0 0 chr1 141810604 141810640 -55384792 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1666 21 36 0 0 chr1 141811392 141811420 -55384012 + AT_rich Low_complexity Low_complexity 1 28 0 3 1666 24 0 0 0 chr1 141811860 141811884 -55383548 + AT_rich Low_complexity Low_complexity 1 24 0 3 1666 419 245 49 0 chr1 141813464 141813607 -55381825 + L1_Mur2 LINE L1 1625 1774 -4106 3 1666 2298 114 27 30 chr1 141813829 141813904 -55381528 + L1Md_F2 LINE L1 5513 5586 -297 3 1666 8320 33 3 0 chr1 141813904 141814895 -55380537 + L1Md_A LINE L1 5588 6581 -1 3 1666 2298 114 27 30 chr1 141814895 141814955 -55380477 + L1Md_F2 LINE L1 5587 5648 -235 3 1666 4358 70 0 12 chr1 141814955 141815535 -55379897 - L1Md_F2 LINE L1 -12 6570 5998 3 1666 3076 38 0 0 chr1 141815535 141815904 -55379528 + L1Md_F2 LINE L1 5649 6017 -565 3 1666 3154 204 56 101 chr1 141815899 141817649 -55377783 + L1_Mur2 LINE L1 1757 3277 -2603 3 1666 1771 246 14 22 chr1 141817666 141818029 -55377403 + Lx5 LINE L1 6455 6876 -584 3 1666 3824 161 32 16 chr1 141818029 141818768 -55376664 + RMER6A LTR ERVK 3 753 -3 3 1666 1771 313 36 24 chr1 141818768 141819246 -55376186 + Lx5 LINE L1 6561 7047 -3 3 1666 468 0 0 0 chr1 141819680 141819732 -55375700 + (A)n Simple_repeat Simple_repeat 1 52 0 3 1667 259 265 124 4 chr1 141819963 141820156 -55375276 + MLT1F1 LTR MaLR 218 470 -99 3 1667 22 35 0 0 chr1 141820228 141820257 -55375175 + AT_rich Low_complexity Low_complexity 1 29 0 3 1667 22 70 0 0 chr1 141820356 141820399 -55375033 + AT_rich Low_complexity Low_complexity 1 43 0 3 1667 4337 14 2 12 chr1 141821027 141821525 -55373907 - MT2_Mm LTR ERVL 0 493 1 3 1667 22 35 0 0 chr1 141822138 141822167 -55373265 + AT_rich Low_complexity Low_complexity 1 29 0 3 1667 1282 209 39 28 chr1 141822367 141822653 -55372779 - Lx5 LINE L1 -2 7048 6760 3 1667 1159 151 136 77 chr1 141822713 141822985 -55372447 + ORR1A4 LTR MaLR 1 288 -41 3 1667 4238 47 0 0 chr1 141822985 141823494 -55371938 - L1Md_T LINE L1 -205 6377 5869 3 1667 306 109 17 52 chr1 141823494 141823506 -55371926 + ORR1A4 LTR MaLR 331 341 -53 3 1667 1071 55 0 7 chr1 141823506 141823652 -55371780 + L1Md_T LINE L1 6438 6582 0 3 1667 306 109 17 52 chr1 141823652 141823697 -55371735 + ORR1A4 LTR MaLR 342 386 -8 3 1667 649 191 25 31 chr1 141824467 141824629 -55370803 + L1_Mus2 LINE L1 6397 6557 -9 3 1667 25 0 0 0 chr1 141826264 141826289 -55369143 + AT_rich Low_complexity Low_complexity 1 25 0 3 1667 1047 236 234 37 chr1 141828002 141828408 -55367024 + RMER15 LTR ERVL 40 525 -50 3 1667 262 352 8 47 chr1 141828940 141829068 -55366364 + B1F2 SINE Alu 13 135 -14 3 1667 893 79 0 8 chr1 141829068 141829196 -55366236 + (GAA)n Simple_repeat Simple_repeat 2 128 0 3 1667 15635 156 31 6 chr1 141829197 141831407 -55364025 + L1_Mus3 LINE L1 3013 5286 -597 3 1667 302 0 26 0 chr1 141831407 141831445 -55363987 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 3 1667 15635 118 24 4 chr1 141831445 141832769 -55362663 + L1_Mus3 LINE L1 5287 6636 -2 3 1667 3103 127 23 27 chr1 141834407 141834965 -55360467 + Lx3B LINE L1 6375 6930 -43 3 1667 599 275 62 0 chr1 141834973 141835133 -55360299 + ORR1A2 LTR MaLR 48 217 -110 3 1667 5636 52 0 4 chr1 141835139 141835846 -55359586 - L1Md_F2 LINE L1 -2 6580 5877 3 1667 25 0 0 0 chr1 141837446 141837471 -55357961 + AT_rich Low_complexity Low_complexity 1 25 0 3 1667 27 35 0 50 chr1 141837542 141837602 -55357830 + AT_rich Low_complexity Low_complexity 1 57 0 3 1667 259 80 19 39 chr1 141837803 141837855 -55357577 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 3 1667 21 36 0 0 chr1 141837890 141837918 -55357514 + AT_rich Low_complexity Low_complexity 1 28 0 3 1667 912 263 100 22 chr1 141837958 141838319 -55357113 + Lx5 LINE L1 6063 6451 -599 3 1667 943 244 36 20 chr1 141838335 141838680 -55356752 + Lx6 LINE L1 5689 6031 -1429 3 1667 1423 276 40 5 chr1 141838668 141839091 -55356341 + Lx6 LINE L1 6996 7433 -27 3 1667 284 261 0 0 chr1 141839114 141839202 -55356230 + L1VL1 LINE L1 16 103 -6319 3 1667 29647 83 14 6 chr1 141839190 141844840 -55350592 + L1Md_F2 LINE L1 98 5586 -297 3 1667 8038 48 2 0 chr1 141844840 141845821 -55349611 + L1Md_F2 LINE L1 5587 6569 -13 3 1667 333 0 0 0 chr1 141846365 141846402 -55349030 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1667 1727 207 62 76 chr1 141846516 141846965 -55348467 + RMER15 LTR ERVL 1 443 -132 3 1667 316 0 0 43 chr1 141847520 141847566 -55347866 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1667 547 222 9 0 chr1 141847590 141847698 -55347734 + RMER15 LTR ERVL 463 571 -4 3 1667 23 0 0 0 chr1 141847723 141847746 -55347686 + AT_rich Low_complexity Low_complexity 1 23 0 3 1667 372 281 86 96 chr1 141848009 141848229 -55347203 + RMER21A LTR ERV1 396 613 -334 3 1667 21 0 0 0 chr1 141848398 141848419 -55347013 + AT_rich Low_complexity Low_complexity 1 21 0 3 1667 243 242 233 85 chr1 141848419 141848595 -55346837 + RMER21B LTR ERV1 364 565 -277 3 1667 230 300 29 0 chr1 141848700 141848770 -55346662 - B1_Mus1 SINE Alu -39 109 38 3 1667 525 150 60 34 chr1 141848929 141849046 -55346386 - B2_Mm2 SINE B2 0 195 76 3 1667 4355 14 2 12 chr1 141849046 141849544 -55345888 - MT2_Mm LTR ERVL 0 493 1 3 1667 302 0 0 0 chr1 141849544 141849582 -55345850 - MERVL-int LTR ERVL 0 5485 5448 3 1667 390 167 46 35 chr1 141849582 141849669 -55345763 - ORR1A3-int LTR MaLR -1323 640 553 3 1667 38649 17 14 0 chr1 141849669 141854956 -55340476 - MERVL-int LTR ERVL -125 5360 1 3 1667 4355 14 2 12 chr1 141854956 141855454 -55339978 - MT2_Mm LTR ERVL 0 493 1 3 1667 482 165 0 0 chr1 141855454 141855533 -55339899 - B2_Mm2 SINE B2 -115 80 2 3 1667 545 314 19 12 chr1 141855839 141856000 -55339432 + RSINE1 SINE B4 4 165 0 3 1667 633 101 0 0 chr1 141858018 141858117 -55337315 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 4 1667 24 91 0 0 chr1 141858303 141858369 -55337063 + AT_rich Low_complexity Low_complexity 1 66 0 4 1667 2062 156 14 6 chr1 141859254 141859608 -55335824 + Lx2 LINE L1 6270 6626 -371 4 1667 425 268 133 36 chr1 141859608 141859887 -55335545 - L1_Mur3 LINE L1 -6531 1181 876 4 1667 4392 238 40 16 chr1 141860479 141860846 -55334586 + Lx5 LINE L1 1160 1530 -4347 4 1667 1918 154 52 0 chr1 141860846 141861152 -55334280 + ORR1A3 LTR MaLR 5 326 0 4 1667 4392 248 66 21 chr1 141861152 141861643 -55333789 + Lx5 LINE L1 1531 2054 -3823 4 1667 225 0 0 0 chr1 141861643 141861668 -55333764 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1667 4392 248 66 21 chr1 141861668 141862223 -55333209 + Lx5 LINE L1 2055 2645 -3232 4 1667 471 35 0 0 chr1 141862223 141862280 -55333152 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1667 4392 248 66 21 chr1 141862280 141862604 -55332828 + Lx5 LINE L1 2646 2966 -2911 4 1667 3901 195 31 33 chr1 141862597 141863015 -55332417 + Lx5 LINE L1 4907 5333 -544 4 1667 850 164 0 27 chr1 141863015 141863157 -55332275 + B1_Mus1 SINE Alu 2 141 -7 4 1667 189 0 0 0 chr1 141863157 141863178 -55332254 + (CAAAC)n Simple_repeat Simple_repeat 5 25 0 4 1667 3901 195 31 33 chr1 141863185 141863710 -55331722 + Lx5 LINE L1 5334 5848 -29 4 1667 691 235 0 112 chr1 141863711 141863917 -55331515 + Lx5 LINE L1 6152 6334 -716 4 1667 3353 102 4 16 chr1 141863917 141864405 -55331027 - L1_Mus3 LINE L1 -5 6633 6152 4 1667 2920 143 48 2 chr1 141864405 141864497 -55330935 + L1_Mm LINE L1 4642 4735 -1148 4 1667 459 0 0 0 chr1 141864497 141864548 -55330884 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 1667 2920 143 48 2 chr1 141864548 141865002 -55330430 + L1_Mm LINE L1 4736 5212 -671 4 1667 2982 228 33 5 chr1 141864990 141865656 -55329776 + Lx5 LINE L1 6324 7008 -42 4 1667 611 257 9 45 chr1 141865700 141865944 -55329488 + L1_Mur3 LINE L1 4633 4887 -993 4 1667 8228 171 5 13 chr1 141866362 141867056 -55328376 + L1VL4 LINE L1 510 1200 -2359 4 1667 2874 103 10 2 chr1 141867056 141867473 -55327959 + L1_Mus2 LINE L1 6147 6566 0 4 1667 8228 189 13 19 chr1 141867473 141867957 -55327475 + L1VL4 LINE L1 1201 1670 -1889 4 1667 185 0 40 0 chr1 141867957 141867982 -55327450 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1667 8228 189 13 19 chr1 141867982 141869215 -55326217 + L1VL4 LINE L1 1671 2902 -657 4 1667 18294 87 2 4 chr1 141869214 141872880 -55322552 - L1Md_F LINE L1 -1971 3912 320 4 1667 5883 202 8 9 chr1 141872873 141874213 -55321219 + L1_Mur2 LINE L1 4514 5851 -26 4 1667 24091 108 20 9 chr1 141874197 141874770 -55320662 + Lx3A LINE L1 1890 2469 -3417 4 1667 3390 122 76 2 chr1 141874770 141875311 -55320121 + L1_Mus4 LINE L1 6055 6635 -1 4 1667 24091 109 28 16 chr1 141875311 141879762 -55315670 + Lx3A LINE L1 2470 6967 -14 4 1667 6000 174 22 32 chr1 141879803 141881007 -55314425 + Lx2B LINE L1 5806 6998 -2 4 1667 1435 185 16 30 chr1 141881023 141881386 -55314046 + Lx5 LINE L1 4872 5229 -651 4 1667 667 250 20 0 chr1 141881381 141881533 -55313899 + Lx5 LINE L1 6766 6920 -130 4 1667 1347 237 24 33 chr1 141881533 141881865 -55313567 + ORR1B1 LTR MaLR 1 329 0 4 1667 3371 192 98 80 chr1 141881865 141882775 -55312657 + ORR1B1-int LTR MaLR 1 926 -1037 4 1667 2246 199 159 47 chr1 141882760 141883339 -55312093 + ORR1B1-int LTR MaLR 871 1749 -214 4 1667 3804 131 5 3 chr1 141883345 141884175 -55311257 - Lx2 LINE L1 -983 6014 5180 4 1667 5703 126 24 16 chr1 141884178 141885072 -55310360 + Lx2 LINE L1 6095 6995 -2 4 1667 1588 187 52 62 chr1 141885094 141885588 -55309844 + ORR1B1 LTR MaLR 19 387 -7 4 1667 436 263 8 8 chr1 141885591 141885725 -55309707 + Lx5 LINE L1 6916 7049 -1 4 1667 2072 234 39 33 chr1 141885727 141885772 -55309660 + Lx5 LINE L1 5231 5273 -607 4 1667 2052 42 4 15 chr1 141885772 141886035 -55309397 + L1Md_F2 LINE L1 6323 6582 0 4 1667 2164 267 55 31 chr1 141886035 141887604 -55307828 + Lx5 LINE L1 5274 7121 -339 4 1667 3491 35 35 0 chr1 141887604 141888032 -55307400 - L1Md_F2 LINE L1 -2 6580 6138 4 1667 2093 288 82 49 chr1 141888032 141888343 -55307089 + Lx5 LINE L1 7122 7433 -27 4 1667 206 170 0 60 chr1 141888350 141888400 -55307032 + A-rich Low_complexity Low_complexity 2 48 0 4 1667 1531 70 6 7 chr1 141888554 141888767 -55306665 - L1Md_F2 LINE L1 -816 5766 5520 4 1667 21 0 0 0 chr1 141889369 141889390 -55306042 + AT_rich Low_complexity Low_complexity 1 21 0 4 1667 1087 52 7 0 chr1 141889410 141889545 -55305887 + B1_Mus2 SINE Alu 1 136 -11 4 1667 270 0 0 0 chr1 141889545 141889575 -55305857 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1667 31 0 0 0 chr1 141890232 141890263 -55305169 + AT_rich Low_complexity Low_complexity 1 31 0 4 1667 234 0 0 0 chr1 141890848 141890874 -55304558 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 4 1667 410 0 20 0 chr1 141891537 141891587 -55303845 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1667 8449 101 3 19 chr1 141891587 141893563 -55301869 - L1_Mus2 LINE L1 -14 6552 4615 4 1667 1632 95 0 0 chr1 141893560 141893782 -55301650 + L1_Mus2 LINE L1 4386 4607 -1276 4 1667 201 74 0 0 chr1 141894282 141894309 -55301123 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1667 567 43 0 0 chr1 141894309 141894378 -55301054 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1667 351 378 57 13 chr1 141894726 141894954 -55300478 + MLT1D LTR MaLR 260 497 -8 4 1667 351 298 40 101 chr1 141895139 141895367 -55300065 - B3 SINE B2 0 216 3 4 1667 259 304 58 10 chr1 141896479 141896582 -55298850 + B1F2 SINE Alu 10 117 -32 4 1667 840 333 19 52 chr1 141896606 141897030 -55298402 + L1_Mur3 LINE L1 49 623 -7089 4 1667 212 181 0 12 chr1 141897680 141897764 -55297668 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 4 1667 180 0 0 0 chr1 141897764 141897784 -55297648 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1667 23 33 0 0 chr1 141897795 141897825 -55297607 + AT_rich Low_complexity Low_complexity 1 30 0 4 1667 3780 55 0 42 chr1 141898232 141898728 -55296704 + MT2C_Mm LTR ERVL 1 475 0 4 1667 796 149 7 7 chr1 141898803 141898945 -55296487 + URR1B DNA MER1_type 83 224 -1 4 1667 503 324 7 33 chr1 141898975 141899128 -55296304 + B1_Mur2 SINE Alu 1 149 0 4 1667 2074 281 55 88 chr1 141899191 141899961 -55295471 + L1_Mur3 LINE L1 258 1005 -6723 4 1667 303 28 0 0 chr1 141899961 141899997 -55295435 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 1667 2074 281 55 88 chr1 141899997 141900097 -55295335 + L1_Mur3 LINE L1 1006 1114 -6614 4 1667 450 135 34 0 chr1 141900097 141900186 -55295246 + Lx LINE L1 6562 6653 -1 4 1667 2074 283 51 79 chr1 141900186 141900446 -55294986 + L1_Mur3 LINE L1 1115 1355 -4525 4 1667 1650 213 47 33 chr1 141900565 141900819 -55294613 + L1_Mur3 LINE L1 1349 1618 -4262 4 1667 352 67 16 16 chr1 141900819 141900880 -55294552 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 4 1667 1650 213 47 33 chr1 141900880 141901076 -55294356 + L1_Mur3 LINE L1 1619 1805 -4075 4 1667 3160 139 68 0 chr1 141901075 141901630 -55293802 + L1_Mus2 LINE L1 4683 5275 -608 4 1667 31765 79 10 5 chr1 141901617 141906872 -55288560 + L1Md_F2 LINE L1 303 5586 -297 4 1667 7774 60 4 5 chr1 141906872 141907869 -55287563 + L1Md_F2 LINE L1 5587 6582 0 4 1667 4938 129 78 51 chr1 141907869 141909164 -55286268 + L1_Mus2 LINE L1 5246 6566 0 4 1667 4856 224 54 52 chr1 141909176 141910780 -55284652 + L1_Mur3 LINE L1 2994 4599 -1281 4 1667 5356 281 36 24 chr1 141910768 141911761 -55283671 + Lx6 LINE L1 5852 6878 -582 4 1667 312 27 0 0 chr1 141911761 141911798 -55283634 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1667 5356 281 36 24 chr1 141911798 141912377 -55283055 + Lx6 LINE L1 6879 7442 -18 4 1667 4804 124 27 10 chr1 141912377 141913152 -55282280 + Lx LINE L1 5859 6646 -8 4 1667 687 31 31 0 chr1 141913232 141913330 -55282102 + (TAGA)n Simple_repeat Simple_repeat 3 103 0 4 1667 416 186 119 21 chr1 141914038 141914181 -55281251 + Lx9 LINE L1 7428 7584 -60 4 1667 846 30 0 0 chr1 141914182 141914283 -55281149 + (GAA)n Simple_repeat Simple_repeat 1 101 0 4 1667 22 35 0 0 chr1 141914289 141914318 -55281114 + AT_rich Low_complexity Low_complexity 1 29 0 4 1667 33 100 0 0 chr1 141915174 141915284 -55280148 + AT_rich Low_complexity Low_complexity 1 110 0 4 1667 593 233 15 0 chr1 141915716 141915849 -55279583 - Lx9 LINE L1 -941 6703 6569 4 1667 6679 117 19 3 chr1 141915902 141917498 -55277934 + L1_Mus3 LINE L1 5011 6637 -1 4 1667 3043 120 8 12 chr1 141917977 141918534 -55276898 + L1Md_Gf LINE L1 650 1302 -5358 4 1667 33003 30 2 0 chr1 141918520 141922500 -55272932 + L1Md_T LINE L1 1600 5586 -297 4 1667 8205 47 0 0 chr1 141922500 141923496 -55271936 + L1Md_T LINE L1 5587 6582 0 4 1667 1550 45 5 0 chr1 141923495 141923696 -55271736 + L1Md_A LINE L1 6381 6582 0 4 1667 25 0 0 0 chr1 141924042 141924067 -55271365 + AT_rich Low_complexity Low_complexity 1 25 0 4 1667 3147 172 139 92 chr1 141924442 141925308 -55270124 + RMER17A2 LTR ERVK 1 906 0 4 1667 3407 132 29 0 chr1 141925539 141926084 -55269348 + L1_Mus4 LINE L1 6069 6629 -7 4 1667 18505 176 17 8 chr1 141927073 141927934 -55267498 + L1_Mus4 LINE L1 2271 3135 -2751 4 1667 185 0 40 0 chr1 141927934 141927959 -55267473 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1667 18505 159 20 7 chr1 141927959 141931405 -55264027 + L1_Mus4 LINE L1 3136 6631 -5 4 1667 24 32 0 0 chr1 141931608 141931639 -55263793 + AT_rich Low_complexity Low_complexity 1 31 0 4 1667 521 64 10 50 chr1 141931845 141931944 -55263488 + L1_Mus2 LINE L1 6472 6566 0 4 1667 272 229 0 0 chr1 141932348 141932409 -55263023 + (ATG)n Simple_repeat Simple_repeat 2 62 0 4 1667 260 312 40 47 chr1 141932569 141932717 -55262715 + Arthur1B DNA Tip100 84 230 -995 4 1667 1837 219 84 80 chr1 141932732 141933258 -55262174 + RMER15 LTR ERVL 1 528 -47 4 1667 2450 240 29 16 chr1 141933259 141933839 -55261593 + RMER20B LTR ERVK 13 600 -27 4 1667 282 387 9 9 chr1 141934085 141934192 -55261240 - PB1D10 SINE Alu -7 110 4 4 1667 520 333 22 0 chr1 141934223 141934358 -55261074 + RSINE1 SINE B4 4 141 -24 4 1667 359 351 94 60 chr1 141934362 141934777 -55260655 + RMER10A LTR ERVL 1 429 -13 4 1667 21 0 0 0 chr1 141934955 141934976 -55260456 + AT_rich Low_complexity Low_complexity 1 21 0 4 1667 1515 247 70 32 chr1 141935484 141935953 -55259479 - ETnERV2-int LTR ERVK -1998 3408 2922 4 1667 3199 118 22 4 chr1 141935931 141936431 -55259001 - ETnERV2-int LTR ERVK -3456 3950 3442 4 1667 372 162 0 269 chr1 141936681 141936797 -55258635 - ETnERV2-int LTR ERVK -2654 2190 2114 4 1667 1212 122 0 14 chr1 141936797 141937005 -55258427 + L1Md_F2 LINE L1 6378 6582 0 4 1667 372 162 0 269 chr1 141937005 141937048 -55258384 - ETnERV2-int LTR ERVK -2731 2113 2074 4 1667 2469 85 72 5 chr1 141937048 141937425 -55258007 - RLTR13D1 LTR ERVK -156 650 249 4 1667 2600 130 6 28 chr1 141937425 141937931 -55257501 - ETnERV2-int LTR ERVK -4283 3123 2696 4 1667 3866 176 96 45 chr1 141937921 141939164 -55256268 - ETnERV2-int LTR ERVK -5358 2048 2 4 1667 2078 149 24 79 chr1 141939165 141939581 -55255851 - RLTR9C LTR ERVK 0 393 1 4 1667 32152 29 0 0 chr1 141939767 141944356 -55251076 - L1Md_T LINE L1 0 6582 1994 4 1667 449 34 17 0 chr1 141945811 141945870 -55249562 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1667 343 0 43 0 chr1 141945961 141946008 -55249424 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 4 1667 7725 196 57 18 chr1 141946225 141948197 -55247235 + L1_Mur2 LINE L1 1515 3563 -2314 4 1667 501 304 95 42 chr1 141948347 141948732 -55246700 + RMER20B LTR ERVK 129 591 -36 4 1667 363 210 3 0 chr1 141948734 141948814 -55246618 + L1_Mur2 LINE L1 3541 3621 -2256 4 1667 6113 55 71 5 chr1 141948814 141949616 -55245816 + RLTR13A LTR ERVK 1 855 0 4 208 46038 39 11 13 chr1 141949616 141955431 -55240001 + ETnERV3-int LTR ERVK 1 5804 -4 4 1668 6121 55 71 5 chr1 141955447 141956249 -55239183 + RLTR13A LTR ERVK 1 855 0 4 1668 5058 187 88 8 chr1 141956249 141957515 -55237917 + L1_Mur2 LINE L1 3616 4983 -894 4 1668 2378 297 39 67 chr1 141957697 141958899 -55236533 + L1_Mur3 LINE L1 27 1098 -6630 4 1668 2071 212 57 116 chr1 141958909 141959178 -55236254 + L1_Mur3 LINE L1 1219 1493 -4387 4 1668 1059 17 0 63 chr1 141959178 141959368 -55236064 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 1668 2071 212 57 116 chr1 141959368 141959501 -55235931 + L1_Mur3 LINE L1 1494 1574 -4306 4 1668 572 108 16 70 chr1 141959501 141959652 -55235780 - L1_Mus3 LINE L1 0 6638 6516 4 1668 2071 212 57 116 chr1 141959652 141959678 -55235754 + L1_Mur3 LINE L1 1575 1586 -4294 4 1668 5337 92 9 1 chr1 141959678 141960422 -55235010 + L1_Mus1 LINE L1 5818 6567 0 4 1668 2071 212 57 116 chr1 141960422 141960822 -55234610 + L1_Mur3 LINE L1 1587 2000 -3880 4 1668 351 78 0 0 chr1 141961304 141961355 -55234077 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1668 185 200 31 0 chr1 141961387 141961452 -55233980 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 4 1668 2372 231 60 17 chr1 141961484 141962132 -55233300 + L1_Mur3 LINE L1 2046 2721 -3156 4 1668 1166 113 0 5 chr1 141962132 141962319 -55233113 + L1_Mus4 LINE L1 6444 6629 -7 4 1668 21 36 0 0 chr1 141962320 141962348 -55233084 + AT_rich Low_complexity Low_complexity 1 28 0 5 1668 1864 160 22 8 chr1 141962375 141962734 -55232698 - RLTR9A LTR ERVK 0 368 5 5 1668 318 189 27 13 chr1 141962747 141962822 -55232610 - ETnERV2-int LTR ERVK 0 7406 7331 5 1668 337 238 0 118 chr1 141963286 141963405 -55232027 - ETnERV2-int LTR ERVK -1200 6206 6102 5 1668 6502 214 128 60 chr1 141963424 141964776 -55230656 - RMER16-int LTR ERVK -1236 4170 2776 5 1668 504 117 0 0 chr1 141964776 141964853 -55230579 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1668 6502 214 128 60 chr1 141964853 141965743 -55229689 - RMER16-int LTR ERVK -2631 2775 1830 5 1668 495 0 0 0 chr1 141965743 141965798 -55229634 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1668 6502 187 51 43 chr1 141965798 141966280 -55229152 - RMER16-int LTR ERVK -3577 1829 1568 5 1668 461 342 20 5 chr1 141966274 141966474 -55228958 - RMER16-int LTR ERVK -1697 1617 1415 5 1668 3555 158 16 24 chr1 141966579 141967029 -55228403 - ETnERV2-int LTR ERVK -5215 2191 1748 5 1668 3209 51 2 2 chr1 141967029 141967425 -55228007 - MTA_Mm LTR MaLR 0 396 1 5 1668 3555 158 16 24 chr1 141967425 141967685 -55227747 - ETnERV2-int LTR ERVK -5659 1747 1487 5 1668 298 95 15 31 chr1 141967715 141967780 -55227652 - Lx LINE L1 0 6654 6591 5 1668 1585 182 84 100 chr1 141967780 141968219 -55227213 - RLTR45-int LTR ERVK -4743 2501 2070 5 1668 205 156 0 72 chr1 141968248 141968345 -55227087 + T-rich Low_complexity Low_complexity 1 90 0 5 1668 8689 107 37 4 chr1 141968647 141970411 -55225021 - Lx3_Mus LINE L1 -62 6947 5129 5 1668 1794 221 25 8 chr1 141970407 141970772 -55224660 - Lx2B LINE L1 -260 6740 6370 5 1668 261 155 0 0 chr1 141970772 141970830 -55224602 + CT-rich Low_complexity Low_complexity 4 61 0 5 1668 465 87 0 0 chr1 141970833 141970902 -55224530 - Lx3A LINE L1 -10 6971 6903 5 1668 3251 36 10 0 chr1 141970906 141971298 -55224134 + MTA_Mm LTR MaLR 1 396 0 5 1668 1984 271 46 116 chr1 141971313 141972313 -55223119 + RMER17B LTR ERVK 2 857 -3 5 1668 3390 137 30 25 chr1 141972327 141972918 -55222514 - Lx3_Mus LINE L1 -102 6907 6314 5 1668 2529 142 96 34 chr1 141972898 141973719 -55221713 + Lx3A LINE L1 5411 6282 -699 5 1668 1006 218 16 12 chr1 141973716 141973962 -55221470 + L1_Mur3 LINE L1 3356 3602 -2278 5 1668 1108 223 44 99 chr1 141973960 141974393 -55221039 - L1_Rod LINE L1 -160 5687 5279 5 1668 388 307 42 51 chr1 141974384 141974539 -55220893 - Lx6 LINE L1 -2 7458 7305 5 1668 3029 57 10 0 chr1 141974539 141974923 -55220509 - RLTR10 LTR ERVK -2 388 1 5 1668 388 307 42 51 chr1 141974923 141974983 -55220449 - Lx6 LINE L1 -156 7304 7245 5 1668 230 271 0 53 chr1 141974983 141975096 -55220336 - L1M LINE L1 -940 5360 5254 5 1668 26 0 0 0 chr1 141975161 141975187 -55220245 + AT_rich Low_complexity Low_complexity 1 26 0 5 1668 705 288 129 25 chr1 141975223 141975677 -55219755 + MT2B LTR ERVL 1 519 -82 5 1668 387 92 0 0 chr1 141975699 141975764 -55219668 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 5 1668 225 281 0 59 chr1 141975877 141975915 -55219517 - MER88 LTR ERVL -256 208 173 5 1668 216 111 0 0 chr1 141975915 141975951 -55219481 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1668 225 281 0 59 chr1 141975951 141975980 -55219452 - MER88 LTR ERVL -292 172 145 5 1668 279 0 0 0 chr1 141976211 141976242 -55219190 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1668 381 58 0 0 chr1 141976242 141976294 -55219138 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1668 6902 239 97 11 chr1 141976336 141978884 -55216548 + MERVL_2A-int LTR ERVL 1 2765 -2996 5 1668 231 310 41 74 chr1 141978884 141978899 -55216533 - ORR1A4 LTR MaLR -49 280 270 5 1668 1442 241 47 23 chr1 141978899 141979243 -55216189 + ORR1B2 LTR MaLR 1 352 -15 5 1668 640 227 21 7 chr1 141979256 141979398 -55216034 + MERVL_2A-int LTR ERVL 2673 2816 -2669 5 1668 7943 244 61 31 chr1 141979408 141981509 -55213923 + MERVL_2A-int LTR ERVL 3026 5190 -571 5 1668 449 160 49 0 chr1 141981517 141981661 -55213771 + (TA)n Simple_repeat Simple_repeat 2 152 0 5 1668 33 43 0 0 chr1 141981807 141981854 -55213578 + AT_rich Low_complexity Low_complexity 1 47 0 5 1668 1699 242 15 8 chr1 141981876 141982267 -55213165 + ORR1B1 LTR MaLR 1 394 0 5 1668 329 323 79 39 chr1 141983410 141983639 -55211793 + L1MA4A LINE L1 5005 5242 -901 5 1668 244 102 20 20 chr1 141983708 141983758 -55211674 + (GTTTG)n Simple_repeat Simple_repeat 4 53 0 5 1668 428 321 91 32 chr1 141984039 141984512 -55210920 + L1MA4A LINE L1 5425 5925 -378 5 1668 1189 213 132 38 chr1 141984634 141984976 -55210456 + ORR1C1 LTR MaLR 5 378 0 5 1668 258 340 36 18 chr1 141986359 141986524 -55208908 + L1MDa LINE L1 1869 2036 -4597 5 1668 1699 214 18 8 chr1 141986631 141987027 -55208405 + Lx2B LINE L1 6001 6400 -600 5 1668 3248 136 22 29 chr1 141987038 141987627 -55207805 - L1_Mur2 LINE L1 -1876 4001 3417 5 1668 500 198 0 0 chr1 141987631 141987742 -55207690 + L1_Mus4 LINE L1 6524 6634 -2 5 1668 952 293 88 32 chr1 141987749 141988126 -55207306 - Lx9 LINE L1 -906 6738 6341 5 1668 24084 153 16 24 chr1 141988282 141988778 -55206654 + Lx3B LINE L1 2124 2667 -3861 5 1668 306 0 0 0 chr1 141988778 141988812 -55206620 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1668 24084 139 16 23 chr1 141988812 141991162 -55204270 + Lx3B LINE L1 2668 4974 -1554 5 1668 945 132 0 14 chr1 141991162 141991308 -55204124 + B1_Mus1 SINE Alu 5 148 0 5 1668 24084 139 23 22 chr1 141991308 141993067 -55202365 + Lx3B LINE L1 4975 6769 -846 5 1668 231 161 0 0 chr1 141993084 141993140 -55202292 + A-rich Low_complexity Low_complexity 1 56 0 5 1668 2099 268 88 9 chr1 141993846 141994413 -55201019 + Lx6 LINE L1 6800 7411 -49 5 1668 3000 194 42 4 chr1 141994439 141995294 -55200138 + Lx2B LINE L1 5369 6247 -753 5 1668 29 28 0 0 chr1 141995335 141995371 -55200061 + AT_rich Low_complexity Low_complexity 1 36 0 5 1668 1038 231 192 3 chr1 141995709 141996100 -55199332 + Lx7 LINE L1 5724 6188 -1508 5 1668 533 164 0 8 chr1 141996100 141996217 -55199215 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 1668 1246 255 40 9 chr1 141996232 141996561 -55198871 + Lx7 LINE L1 6176 6514 -1182 5 1668 942 249 65 52 chr1 141996559 141996868 -55198564 + Lx7 LINE L1 7380 7692 -4 5 1668 218 336 15 76 chr1 141997093 141997225 -55198207 - MER5A DNA MER1_type -62 127 4 5 1668 21 0 0 0 chr1 141997265 141997286 -55198146 + AT_rich Low_complexity Low_complexity 1 21 0 5 1668 21 0 0 0 chr1 141999660 141999681 -55195751 + AT_rich Low_complexity Low_complexity 1 21 0 5 1668 22 35 0 0 chr1 141999889 141999918 -55195514 + AT_rich Low_complexity Low_complexity 1 29 0 5 1668 357 182 0 43 chr1 141999931 142000000 -55195432 - MTEb LTR MaLR 0 379 314 5 1668 277 177 12 12 chr1 142000040 142000120 -55195312 + GA-rich Low_complexity Low_complexity 2 81 0 1 1668 591 341 101 0 chr1 142000122 142000389 -55195043 - MTEa LTR MaLR -85 294 1 2 1668 522 319 25 44 chr1 142001396 142001711 -55193721 + Lx9 LINE L1 7209 7517 -127 3 1668 276 185 0 0 chr1 142001711 142001765 -55193667 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1668 22 70 0 0 chr1 142002625 142002668 -55192764 + AT_rich Low_complexity Low_complexity 1 43 0 5 1668 21 57 0 0 chr1 142002772 142002807 -55192625 + AT_rich Low_complexity Low_complexity 1 35 0 6 1668 228 192 0 19 chr1 142003345 142003398 -55192034 + A-rich Low_complexity Low_complexity 4 55 0 7 1668 5549 46 3 6 chr1 142003791 142004491 -55190941 + L1Md_F2 LINE L1 5877 6574 -8 8 1668 2672 10 0 0 chr1 142005546 142005854 -55189578 - L1Md_T LINE L1 -1717 4166 3859 9 1668 12347 24 0 0 chr1 142005852 142007301 -55188131 + L1Md_T LINE L1 4138 5586 -297 9 1668 8976 6 0 0 chr1 142007301 142008297 -55187135 + L1Md_T LINE L1 5587 6582 0 9 1668 882 327 51 40 chr1 142009913 142010237 -55185195 + Lx5 LINE L1 6077 6408 -642 1 1668 373 186 0 0 chr1 142010237 142010323 -55185109 - L1Md_F2 LINE L1 0 6582 6497 1 1668 882 325 7 109 chr1 142010323 142010415 -55185017 + Lx5 LINE L1 6409 6453 -597 1 1668 1152 246 28 36 chr1 142010385 142010744 -55184688 + Lx6 LINE L1 5687 6042 -1418 1 1668 1552 276 41 2 chr1 142010729 142011143 -55184289 + Lx6 LINE L1 7005 7434 -26 1 1668 363 23 0 0 chr1 142011667 142011711 -55183721 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1668 1857 218 21 89 chr1 142011827 142012300 -55183132 + RMER15 LTR ERVL 3 443 -132 1 1668 567 207 9 0 chr1 142012885 142012996 -55182436 + RMER15 LTR ERVL 461 572 -3 1 1668 30 27 0 0 chr1 142013005 142013042 -55182390 + AT_rich Low_complexity Low_complexity 1 37 0 1 1668 431 283 51 83 chr1 142013279 142013533 -55181899 + RMER21B LTR ERV1 250 495 -347 1 1668 525 83 0 0 chr1 142013707 142013791 -55181641 + (CAAAAA)n Simple_repeat Simple_repeat 2 85 0 1 1668 229 276 234 69 chr1 142013791 142013966 -55181466 + RMER21A LTR ERV1 364 567 -275 1 1668 230 234 0 41 chr1 142014035 142014084 -55181348 + RMER21A LTR ERV1 789 835 -112 1 1668 883 164 58 42 chr1 142014310 142014501 -55180931 - B2_Mm2 SINE B2 0 195 2 1 1668 212 394 42 11 chr1 142014684 142014779 -55180653 - B1F1 SINE Alu -48 101 4 2 1668 473 353 38 13 chr1 142014809 142014967 -55180465 + RSINE1 SINE B4 4 165 0 2 1668 825 99 0 0 chr1 142016954 142017075 -55178357 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 2 1668 1041 147 0 0 chr1 142017089 142017246 -55178186 - B2_Mm2 SINE B2 -37 158 2 2 1668 2216 144 0 6 chr1 142018410 142018752 -55176680 + Lx2 LINE L1 6287 6626 -371 2 1668 675 305 4 4 chr1 142018753 142019016 -55176416 - L1_Mur3 LINE L1 -6532 1180 918 2 1668 25 83 0 0 chr1 142019475 142019535 -55175897 + AT_rich Low_complexity Low_complexity 1 60 0 2 1668 1006 213 50 11 chr1 142019668 142020024 -55175408 + Lx5 LINE L1 1162 1528 -4349 2 1668 1656 176 66 0 chr1 142020031 142020333 -55175099 + ORR1A2 LTR MaLR 6 327 0 2 1668 2308 225 248 41 chr1 142020335 142021205 -55174227 + Lx5 LINE L1 1531 2659 -3221 2 1668 366 23 0 0 chr1 142021205 142021248 -55174184 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1668 2308 225 248 41 chr1 142021248 142021563 -55173869 + Lx5 LINE L1 2660 2961 -2919 2 1668 4090 213 26 7 chr1 142021565 142022488 -55172944 + Lx5 LINE L1 4910 5850 -27 2 1668 784 265 11 6 chr1 142022486 142022668 -55172764 + Lx5 LINE L1 6151 6333 -717 2 1668 3065 112 27 8 chr1 142022668 142023143 -55172289 - L1_Mus3 LINE L1 -6 6632 6149 3 1668 3332 167 0 0 chr1 142023143 142023712 -55171720 + L1_Mm LINE L1 4645 5213 -670 3 1668 1157 254 119 6 chr1 142023700 142024335 -55171097 + Lx5 LINE L1 6324 7047 -3 2 1668 685 251 19 33 chr1 142024367 142024577 -55170855 + L1_Mur3 LINE L1 4678 4884 -996 3 1668 269 184 0 0 chr1 142024812 142024861 -55170571 + L1VL2 LINE L1 521 569 -5766 3 1668 1107 182 1 116 chr1 142024975 142025304 -55170128 + Lx2B LINE L1 5589 5865 -1135 3 1668 13619 115 19 9 chr1 142025275 142025845 -55169587 + L1_Mur1 LINE L1 1890 2469 -3417 3 1668 3761 129 3 0 chr1 142025845 142026424 -55169008 + L1_Mus4 LINE L1 6055 6635 -1 3 1668 13619 115 19 9 chr1 142026424 142028066 -55167366 + L1_Mur1 LINE L1 2470 4123 -1763 3 1668 987 83 0 0 chr1 142028063 142028195 -55167237 + Lx3_Mus LINE L1 6391 6522 -487 3 1668 5717 180 34 19 chr1 142028195 142029391 -55166041 + Lx2B LINE L1 5784 6997 -3 3 1668 4434 195 13 20 chr1 142029399 142030309 -55165123 + L1VL2 LINE L1 119 1022 -5313 3 1668 1434 282 133 11 chr1 142030301 142031168 -55164264 + Lx6 LINE L1 6269 7460 0 4 1668 26 30 0 0 chr1 142031746 142031779 -55163653 + AT_rich Low_complexity Low_complexity 1 33 0 4 1668 24 0 0 0 chr1 142032228 142032252 -55163180 + AT_rich Low_complexity Low_complexity 1 24 0 4 1668 21 36 0 0 chr1 142033003 142033031 -55162401 + AT_rich Low_complexity Low_complexity 1 28 0 4 1668 24 0 0 0 chr1 142033471 142033495 -55161937 + AT_rich Low_complexity Low_complexity 1 24 0 4 1668 436 238 49 0 chr1 142035075 142035218 -55160214 + L1_Mur2 LINE L1 1625 1774 -4106 4 1668 24 32 0 0 chr1 142035240 142035271 -55160161 + AT_rich Low_complexity Low_complexity 1 31 0 4 1668 297 20 0 20 chr1 142035300 142035350 -55160082 + L1Md_T LINE L1 6534 6582 0 4 1668 4288 77 0 12 chr1 142035410 142035990 -55159442 - L1Md_F2 LINE L1 -12 6570 5998 4 1668 3114 32 0 0 chr1 142035990 142036359 -55159073 + L1Md_F2 LINE L1 5649 6017 -565 4 1668 3464 211 43 171 chr1 142036357 142038098 -55157334 + L1_Mur2 LINE L1 1758 3276 -2601 4 1668 1464 240 14 22 chr1 142038115 142038478 -55156954 + Lx6 LINE L1 6455 6876 -584 4 1668 3774 164 33 14 chr1 142038478 142039215 -55156217 + RMER6A LTR ERVK 3 753 -3 5 1668 1435 302 18 29 chr1 142039215 142039492 -55155940 + Lx6 LINE L1 6561 6835 -215 4 1668 236 302 79 0 chr1 142039886 142039949 -55155483 + MLT1F2 LTR MaLR 218 285 -275 5 1668 22 70 0 0 chr1 142040279 142040322 -55155110 + AT_rich Low_complexity Low_complexity 1 43 0 5 1668 21 0 0 0 chr1 142040405 142040426 -55155006 + AT_rich Low_complexity Low_complexity 1 21 0 5 1668 22 35 0 0 chr1 142041553 142041582 -55153850 + AT_rich Low_complexity Low_complexity 1 29 0 5 1668 1240 199 45 35 chr1 142041784 142042070 -55153362 - Lx5 LINE L1 -2 7048 6760 5 1668 1364 142 129 69 chr1 142042131 142042434 -55152998 + ORR1A4 LTR MaLR 1 321 -8 5 1668 25564 156 21 16 chr1 142044702 142046365 -55149067 + L1_Mus3 LINE L1 373 2033 -3850 5 1668 453 36 0 0 chr1 142046365 142046420 -55149012 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 5 1668 25564 156 22 4 chr1 142046420 142049595 -55145837 + L1_Mus3 LINE L1 2034 5285 -598 5 1668 477 0 0 0 chr1 142049595 142049648 -55145784 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 5 1668 25564 120 22 2 chr1 142049648 142050976 -55144456 + L1_Mus3 LINE L1 5286 6637 -1 5 1668 3536 128 22 18 chr1 142052611 142053208 -55142224 + Lx3B LINE L1 6375 6973 0 6 1668 291 93 0 0 chr1 142053216 142053259 -55142173 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1668 396 0 0 0 chr1 142053271 142053315 -55142117 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1668 3046 98 27 0 chr1 142053318 142053757 -55141675 + Lx3_Mus LINE L1 6559 7009 0 6 1668 7060 117 16 3 chr1 142054203 142055550 -55139882 - L1_Mus3 LINE L1 -20 6618 5261 6 1668 3886 156 88 57 chr1 142055582 142056509 -55138923 - RMER17B LTR ERVK -1 957 2 6 1668 5077 161 10 12 chr1 142056519 142057421 -55138011 - L1_Mus3 LINE L1 -619 5264 4365 6 1668 537 185 27 10 chr1 142058065 142058233 -55137199 + RMER19A LTR ERVK 2 260 -477 6 1668 2901 190 75 24 chr1 142060018 142060675 -55134757 - RMER6C LTR ERVK 0 690 1 6 1668 3741 77 15 19 chr1 142062000 142062530 -55132902 - L1Md_F2 LINE L1 -2 6580 6053 6 1668 15278 65 4 5 chr1 142062530 142062704 -55132728 - L1_Mm LINE L1 -54 5829 5662 6 1668 2153 97 25 25 chr1 142062704 142063031 -55132401 - IAPLTR2b LTR ERVK 0 327 1 7 1668 15278 65 4 5 chr1 142063031 142064867 -55130565 - L1_Mm LINE L1 -222 5661 3821 6 1668 544 220 39 34 chr1 142064945 142065124 -55130308 + Lx7 LINE L1 7516 7695 -1 7 1668 1370 283 106 9 chr1 142065137 142065680 -55129752 + Lx8 LINE L1 5332 5925 -1548 7 1668 206 128 26 0 chr1 142065707 142065746 -55129686 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1668 354 37 0 0 chr1 142065755 142065809 -55129623 - L1Md_T LINE L1 0 6582 6529 7 1668 472 279 159 51 chr1 142066179 142066523 -55128909 + RMER1C Other Other 565 865 -477 7 1668 852 125 73 0 chr1 142066709 142066845 -55128587 + B1_Mus1 SINE Alu 1 146 -2 7 1668 348 229 118 122 chr1 142067024 142067086 -55128346 + RMER1C Other Other 1131 1213 -129 7 1668 492 18 0 0 chr1 142067086 142067143 -55128289 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 7 1668 561 15 0 0 chr1 142067144 142067210 -55128222 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 7 1668 348 229 118 122 chr1 142067210 142067349 -55128083 + RMER1C Other Other 1214 1333 -9 7 1668 276 306 33 20 chr1 142067593 142067743 -55127689 - L1ME2z LINE L1 -3 6441 6290 7 1668 343 266 49 0 chr1 142067756 142067845 -55127587 - PB1D10 SINE Alu -7 110 18 8 1668 21 36 0 0 chr1 142067873 142067901 -55127531 + AT_rich Low_complexity Low_complexity 1 28 0 8 1668 22 0 0 0 chr1 142067994 142068016 -55127416 + AT_rich Low_complexity Low_complexity 1 22 0 8 1668 26 74 0 0 chr1 142069544 142069598 -55125834 + AT_rich Low_complexity Low_complexity 1 54 0 8 1668 22 56 0 0 chr1 142070449 142070485 -55124947 + AT_rich Low_complexity Low_complexity 1 36 0 8 1668 584 264 21 0 chr1 142070518 142070662 -55124770 - B1_Mus2 SINE Alu 0 147 1 8 1668 234 195 0 0 chr1 142070904 142070945 -55124487 - L1M2 LINE L1 -374 5926 5886 8 1668 228 135 0 0 chr1 142071354 142071391 -55124041 + (GGA)n Simple_repeat Simple_repeat 2 38 0 8 1668 435 38 0 0 chr1 142071848 142071901 -55123531 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1668 486 0 0 0 chr1 142071901 142071954 -55123478 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1668 195 129 0 0 chr1 142073383 142073414 -55122018 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 9 1668 7154 108 6 8 chr1 142073554 142074648 -55120784 - L1_Mm LINE L1 -1667 4216 3126 9 1668 2237 118 47 3 chr1 142074647 142074988 -55120444 - L1_Mus3 LINE L1 -25 6613 6258 9 1668 2085 90 4 0 chr1 142074987 142075264 -55120168 + L1_Mus3 LINE L1 5982 6259 -379 9 1668 566 236 100 18 chr1 142075387 142075607 -55119825 - Lx9 LINE L1 0 7644 7407 9 1668 1016 125 0 0 chr1 142075669 142075837 -55119595 - Lx2A1 LINE L1 0 7008 6841 9 1668 291 333 32 0 chr1 142075967 142076060 -55119372 + PB1D9 SINE Alu 24 119 -1 9 1668 244 333 13 0 chr1 142076969 142077044 -55118388 + GA-rich Low_complexity Low_complexity 1 76 0 9 1668 1002 118 11 11 chr1 142077044 142077201 -55118231 + (GGAA)n Simple_repeat Simple_repeat 1 159 0 9 1668 1347 45 0 0 chr1 142077201 142077380 -55118052 + (CAGG)n Simple_repeat Simple_repeat 2 180 0 9 1668 1002 118 11 11 chr1 142077380 142077402 -55118030 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 9 1668 285 255 128 28 chr1 142078845 142078954 -55116478 + PB1D7 SINE Alu 1 120 0 1 1668 1112 59 0 50 chr1 142080382 142080543 -55114889 + L1_Mus1 LINE L1 6415 6567 0 1 1668 205 330 105 19 chr1 142081005 142081110 -55114322 - MIR SINE MIR -125 137 24 1 1668 346 308 27 110 chr1 142081181 142081444 -55113988 - MTEb LTR MaLR 0 379 139 1 1668 577 290 110 14 chr1 142081477 142081823 -55113609 + Arthur1 DNA Tip100 3377 3755 -192 1 1669 212 0 0 35 chr1 142082190 142082219 -55113213 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1 1669 1185 36 0 0 chr1 142082231 142082369 -55113063 - B1_Mm SINE Alu -8 139 2 1 1669 235 260 0 150 chr1 142082391 142082504 -55112928 + B4A SINE B4 74 169 -123 1 1669 617 97 202 0 chr1 142082425 142082539 -55112893 + B1_Mm SINE Alu 11 147 0 1 1669 180 97 0 0 chr1 142082540 142082571 -55112861 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1669 36 0 0 0 chr1 142082580 142082616 -55112816 + AT_rich Low_complexity Low_complexity 1 36 0 1 1669 1238 339 96 26 chr1 142082770 142083089 -55112343 - Lx8 LINE L1 -144 7329 6970 1 1669 207 0 0 0 chr1 142083089 142083112 -55112320 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1669 5255 99 15 1 chr1 142083112 142083860 -55111572 - Lx3_Mus LINE L1 -18 6991 6234 1 1669 1238 339 96 26 chr1 142083860 142084224 -55111208 - Lx8 LINE L1 -504 6969 6598 1 1669 442 318 87 47 chr1 142084519 142084819 -55110613 - RMER10A LTR ERVL -118 324 13 1 1669 5713 95 27 46 chr1 142084876 142085795 -55109637 + RLTR13D6 LTR ERVK 1 902 0 1 1669 212 205 0 43 chr1 142085935 142085981 -55109451 + polypurine Low_complexity Low_complexity 2 45 0 1 1669 333 0 0 0 chr1 142086253 142086290 -55109142 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1669 283 290 30 68 chr1 142086702 142086835 -55108597 + RMER10A LTR ERVL 19 146 -296 1 1669 262 260 42 219 chr1 142086971 142087163 -55108269 + RMER10A LTR ERVL 257 414 -28 1 1669 192 224 39 58 chr1 142087276 142087328 -55108104 - L4 LINE RTE -895 1134 1084 1 1669 226 97 0 0 chr1 142087605 142087636 -55107796 + ORR1C2 LTR MaLR 354 384 0 1 1669 340 287 28 9 chr1 142087661 142087743 -55107689 - MTE-int LTR MaLR -44 1536 1453 1 1669 1068 197 5 28 chr1 142087743 142087957 -55107475 - RMER19B LTR ERVK 0 902 694 1 1669 3337 177 60 0 chr1 142087957 142088585 -55106847 + Lx4A LINE L1 6393 7058 0 1 1669 543 325 82 20 chr1 142088897 142089049 -55106383 + ORR1E LTR MaLR 4 157 -202 1 1669 537 68 0 0 chr1 142089049 142089123 -55106309 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1669 543 325 82 20 chr1 142089123 142089165 -55106267 + ORR1E LTR MaLR 158 210 -149 1 1669 320 243 14 0 chr1 142089202 142089276 -55106156 + ORR1E LTR MaLR 305 379 0 1 1669 459 0 0 0 chr1 142089637 142089688 -55105744 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1669 595 64 0 0 chr1 142089735 142089813 -55105619 - B1_Mus2 SINE Alu -5 142 65 1 1669 1083 83 21 0 chr1 142089818 142089963 -55105469 + B1_Mus1 SINE Alu 1 148 0 1 1669 184 72 23 45 chr1 142089963 142090007 -55105425 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 1 1669 21 0 0 0 chr1 142090219 142090240 -55105192 + AT_rich Low_complexity Low_complexity 1 21 0 1 1669 2162 154 20 10 chr1 142090554 142090953 -55104479 + Lx2B LINE L1 5940 6342 -658 1 1669 21 57 0 0 chr1 142091226 142091261 -55104171 + AT_rich Low_complexity Low_complexity 1 35 0 1 1669 32402 78 9 4 chr1 142091514 142096685 -55098747 + L1Md_F2 LINE L1 387 5586 -297 1 1669 7734 57 3 2 chr1 142096685 142097666 -55097766 + L1Md_F2 LINE L1 5587 6568 -14 1 1669 239 421 38 0 chr1 142097911 142098044 -55097388 + MLT1I LTR MaLR 101 238 -173 1 1669 227 153 192 77 chr1 142098390 142098468 -55096964 + Lx8 LINE L1 7387 7473 0 1 1669 504 48 0 0 chr1 142098633 142098696 -55096736 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 1 1669 2605 59 0 0 chr1 142098706 142099030 -55096402 - L1_Mus1 LINE L1 0 6567 6244 1 1669 884 29 0 0 chr1 142099030 142099132 -55096300 + L1_Mus1 LINE L1 6155 6256 -310 1 1669 435 38 0 0 chr1 142099530 142099583 -55095849 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1669 351 0 0 0 chr1 142099583 142099621 -55095811 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1669 384 237 17 26 chr1 142100671 142100788 -55094644 - Lx7 LINE L1 -28 7668 7553 1 1669 423 125 0 0 chr1 142100832 142100904 -55094528 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1669 580 238 62 149 chr1 142100911 142101187 -55094245 - Lx7 LINE L1 -286 7410 7159 1 1669 447 234 38 68 chr1 142101221 142101354 -55094078 + Lx7 LINE L1 7021 7149 -547 1 1669 1229 75 109 0 chr1 142101641 142101815 -55093617 - B2_Mm2 SINE B2 0 195 3 1 1669 3222 52 2 0 chr1 142102253 142102656 -55092776 - L1Md_F2 LINE L1 -12 6570 6167 1 1669 252 335 26 93 chr1 142102918 142103112 -55092320 + LTR87 LTR ERVL? 291 471 -153 1 1669 1577 218 38 38 chr1 142103662 142103825 -55091607 + ORR1D1 LTR MaLR 5 169 -205 1 1669 209 59 59 0 chr1 142103825 142103859 -55091573 + (TCTCTG)n Simple_repeat Simple_repeat 4 39 0 1 1669 972 116 0 0 chr1 142103866 142104038 -55091394 + (TC)n Simple_repeat Simple_repeat 1 172 0 1 1669 1577 218 38 38 chr1 142104038 142104234 -55091198 + ORR1D1 LTR MaLR 175 372 -2 1 1669 705 318 85 31 chr1 142104476 142105110 -55090322 + L1MC3 LINE L1 6085 6752 -1033 1 1669 508 283 39 97 chr1 142105455 142105662 -55089770 - B3 SINE B2 -15 201 7 1 1669 3350 67 2 2 chr1 142105682 142106118 -55089314 + L1_Mus2 LINE L1 6131 6566 0 1 1669 276 289 62 0 chr1 142106124 142106221 -55089211 + L1MC3 LINE L1 6748 6850 -935 1 1669 397 62 0 30 chr1 142106233 142106300 -55089132 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1669 1938 217 54 22 chr1 142106330 142106465 -55088967 - MTC LTR MaLR -2 419 289 1 1669 5912 164 58 8 chr1 142106465 142107526 -55087906 + RLTR13D3 LTR ERVK 1 1114 0 1 1669 1938 217 54 22 chr1 142107526 142107796 -55087636 - MTC LTR MaLR -133 288 1 1 1669 346 257 130 11 chr1 142107858 142108035 -55087397 + L1MC3 LINE L1 6944 7141 -644 1 1669 1009 141 6 0 chr1 142108390 142108560 -55086872 + L1_Mur2 LINE L1 4899 5069 -808 1 1669 2213 258 53 28 chr1 142108566 142109169 -55086263 + RMER20B LTR ERVK 10 627 0 1 1669 3132 186 32 8 chr1 142109170 142109354 -55086078 + L1_Mur2 LINE L1 5065 5243 -634 1 1669 219 36 0 0 chr1 142109354 142109382 -55086050 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1669 3132 186 32 8 chr1 142109382 142109819 -55085613 + L1_Mur2 LINE L1 5244 5699 -178 1 1669 1001 310 51 17 chr1 142109822 142110173 -55085259 + RMER1C Other Other 435 797 -545 1 1669 327 143 0 45 chr1 142110200 142110266 -55085166 - RLTR26 LTR ERVK -342 300 238 1 1669 579 327 109 25 chr1 142110324 142110682 -55084750 + MLT1B LTR MaLR 1 388 -2 1 1669 27 81 0 0 chr1 142110790 142110852 -55084580 + AT_rich Low_complexity Low_complexity 1 62 0 1 1669 8905 10 0 0 chr1 142111977 142113538 -55081894 - L1Md_T LINE L1 -12 6570 5010 1 1669 2105 171 88 8 chr1 142113591 142113991 -55081441 - Lx2B LINE L1 -5 6995 6564 1 1669 576 288 101 129 chr1 142114095 142114530 -55080902 + RLTR23 LTR ERV1 2 424 -6 1 1669 254 293 157 50 chr1 142114757 142114897 -55080535 - Kanga1 DNA Tc2 -1545 200 46 1 1669 998 300 25 55 chr1 142115073 142115148 -55080284 - Lx8 LINE L1 -917 6556 6497 1 1669 4644 123 15 14 chr1 142115148 142115882 -55079550 - Lx LINE L1 -10 6644 5910 1 1669 998 300 25 55 chr1 142115882 142116169 -55079263 - Lx8 LINE L1 -977 6496 6205 1 1669 26 30 0 0 chr1 142116179 142116212 -55079220 + AT_rich Low_complexity Low_complexity 1 33 0 1 1669 559 316 45 84 chr1 142116361 142116696 -55078736 + ORR1E LTR MaLR 33 354 -5 1 1669 2588 354 69 28 chr1 142116703 142118151 -55077281 + ORR1E-int LTR MaLR 1 1507 -73 1 1669 1994 129 50 17 chr1 142118170 142118563 -55076869 + RMER6D LTR ERVK 2 400 -290 1 1669 251 202 12 0 chr1 142118580 142118664 -55076768 + (CAGTT)n Simple_repeat Simple_repeat 2 86 0 1 1669 263 67 222 0 chr1 142118718 142118763 -55076669 + RMER6D LTR ERVK 500 554 -136 1 1669 240 231 75 30 chr1 142118982 142119049 -55076383 + MTEa LTR MaLR 279 348 -31 1 1669 1597 171 78 43 chr1 142120059 142120252 -55075180 + RMER17C LTR ERVK 1 202 -208 1 1669 450 0 0 0 chr1 142120252 142120302 -55075130 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1669 189 0 0 0 chr1 142120302 142120322 -55075110 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1669 1597 171 78 43 chr1 142120322 142120523 -55074909 + RMER17C LTR ERVK 203 409 -1 1 1669 1098 317 54 17 chr1 142121091 142121210 -55074222 + RMER1B Other Other 1 119 -947 1 1669 734 67 0 9 chr1 142121210 142121316 -55074116 + (GA)n Simple_repeat Simple_repeat 1 105 0 1 1669 1098 324 79 17 chr1 142121316 142121795 -55073637 + RMER1B Other Other 120 478 -588 1 1669 560 134 0 10 chr1 142121812 142121910 -55073522 + (GGGGA)n Simple_repeat Simple_repeat 2 98 0 1 1669 1441 254 110 88 chr1 142121926 142122427 -55073005 + RMER1A Other Other 95 606 -424 1 1669 373 22 22 0 chr1 142122429 142122475 -55072957 - HAL1-3A_ME LINE L1 -836 2022 1976 1 1669 548 194 0 8 chr1 142122476 142122601 -55072831 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 1669 573 314 39 10 chr1 142122734 142122904 -55072528 + B3 SINE B2 1 173 -43 1 1669 207 0 0 0 chr1 142122904 142122927 -55072505 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1669 573 314 39 10 chr1 142122927 142122962 -55072470 + B3 SINE B2 174 212 -4 1 1669 208 237 40 0 chr1 142123002 142123078 -55072354 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 1 1669 615 278 66 20 chr1 142124265 142124718 -55070714 + Lx7 LINE L1 7159 7678 -18 1 1669 666 247 25 45 chr1 142124727 142124926 -55070506 - B2_Mm2 SINE B2 0 195 1 1 1669 231 342 13 0 chr1 142125508 142125587 -55069845 - ORR1D2 LTR MaLR 0 370 291 1 1669 676 151 37 68 chr1 142125591 142125754 -55069678 - Lx4A LINE L1 -1 7057 6900 1 1669 463 206 108 0 chr1 142125771 142125873 -55069559 - ORR1D2 LTR MaLR -255 115 3 1 1669 261 75 0 0 chr1 142126478 142126518 -55068914 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1669 1806 65 0 4 chr1 142126596 142126826 -55068606 - L1_Mus1 LINE L1 -1 6566 6338 1 1669 871 127 13 0 chr1 142127047 142127197 -55068235 + (TA)n Simple_repeat Simple_repeat 1 152 0 1 1669 5772 237 46 37 chr1 142127747 142128195 -55067237 - Lx5 LINE L1 -4 7046 6587 1 1669 501 17 0 0 chr1 142128195 142128253 -55067179 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1669 17851 210 68 28 chr1 142128253 142130120 -55065312 - Lx5 LINE L1 -464 6586 4691 1 1669 1870 138 9 63 chr1 142130120 142130468 -55064964 - ORR1A4 LTR MaLR 0 329 1 1 1669 17851 193 98 22 chr1 142130468 142133942 -55061490 - Lx5 LINE L1 -1187 4690 896 1 1669 180 0 0 0 chr1 142134672 142134692 -55060740 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1669 610 272 0 82 chr1 142134692 142134888 -55060544 - B3A SINE B2 -16 182 3 1 1669 225 0 0 0 chr1 142135620 142135645 -55059787 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1669 785 311 57 18 chr1 142135675 142135750 -55059682 - B4A SINE B4 0 292 217 1 1669 243 0 0 0 chr1 142135750 142135777 -55059655 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1669 785 311 57 18 chr1 142135777 142135982 -55059450 - B4A SINE B4 -76 216 1 1 1669 314 278 23 168 chr1 142136431 142136604 -55058828 - MTE2a LTR MaLR -231 148 1 2 1669 297 352 179 4 chr1 142136762 142137021 -55058411 - MER21B LTR ERV1 -249 614 311 2 1669 495 134 0 0 chr1 142137026 142137108 -55058324 + (CCTG)n Simple_repeat Simple_repeat 2 83 0 2 1669 274 61 20 20 chr1 142137110 142137160 -55058272 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 1669 709 355 24 27 chr1 142137167 142137462 -55057970 - MER21B LTR ERV1 -558 305 12 2 1669 485 328 104 15 chr1 142138672 142138873 -55056559 - B4A SINE B4 -71 221 3 2 1669 22 56 0 0 chr1 142139482 142139518 -55055914 + AT_rich Low_complexity Low_complexity 1 36 0 2 1669 1225 48 0 0 chr1 142139518 142139665 -55055767 - B1_Mus2 SINE Alu 0 147 1 2 1669 216 0 0 0 chr1 142140067 142140091 -55055341 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1669 504 0 0 0 chr1 142140091 142140147 -55055285 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1669 180 77 0 0 chr1 142141347 142141373 -55054059 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1669 242 172 0 49 chr1 142142433 142142494 -55052938 + T-rich Low_complexity Low_complexity 1 58 0 2 1669 306 175 0 0 chr1 142144903 142144960 -55050472 - Lx3C LINE L1 -2 6974 6918 2 1669 248 333 46 0 chr1 142145154 142145241 -55050191 - B1F SINE Alu -58 91 1 2 1669 219 279 15 0 chr1 142147071 142147139 -55048293 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1669 334 361 11 56 chr1 142147165 142147344 -55048088 - B4A SINE B4 -14 278 108 2 1669 414 0 0 0 chr1 142147875 142147921 -55047511 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1669 237 222 56 0 chr1 142148556 142148610 -55046822 - B1F SINE Alu -19 130 74 2 1669 198 191 0 0 chr1 142149419 142149461 -55045971 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1669 22 103 0 0 chr1 142149472 142149550 -55045882 + AT_rich Low_complexity Low_complexity 1 78 0 2 1669 184 295 126 54 chr1 142151096 142151207 -55044225 - MIRb SINE MIR -15 253 135 2 1669 249 174 50 42 chr1 142151429 142151549 -55043883 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1669 206 310 56 22 chr1 142152280 142152369 -55043063 - L4 LINE RTE -256 1773 1682 2 1669 210 294 29 14 chr1 142152579 142152648 -55042784 + B4A SINE B4 3 72 -220 2 1669 210 182 23 0 chr1 142152813 142152857 -55042575 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2 1669 297 324 19 19 chr1 142154353 142154457 -55040975 + PB1D10 SINE Alu 12 115 -2 2 1669 26 64 0 0 chr1 142155026 142155073 -55040359 + AT_rich Low_complexity Low_complexity 1 47 0 2 1669 22 0 0 0 chr1 142155746 142155768 -55039664 + AT_rich Low_complexity Low_complexity 1 22 0 2 1669 1124 196 21 21 chr1 142156868 142157108 -55038324 - Lx3B LINE L1 0 6973 6734 2 1669 40 0 0 0 chr1 142157187 142157227 -55038205 + AT_rich Low_complexity Low_complexity 1 40 0 2 1669 29 0 0 0 chr1 142158416 142158445 -55036987 + AT_rich Low_complexity Low_complexity 1 29 0 2 1669 21 0 0 0 chr1 142158802 142158823 -55036609 + AT_rich Low_complexity Low_complexity 1 21 0 2 1669 216 331 121 7 chr1 142159118 142159267 -55036165 + MIR SINE MIR 61 226 -36 2 1669 776 292 114 57 chr1 142159348 142159856 -55035576 - Lx8 LINE L1 -385 7088 6552 2 1669 809 311 55 37 chr1 142159897 142160334 -55035098 - Lx8 LINE L1 -993 6480 6036 2 1669 1014 66 0 0 chr1 142160848 142160985 -55034447 + B1_Mm SINE Alu 9 145 -2 2 1669 612 62 0 0 chr1 142160985 142161066 -55034366 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 2 1669 205 27 81 0 chr1 142161314 142161351 -55034081 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 2 1669 510 31 0 0 chr1 142162572 142162636 -55032796 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1669 273 308 176 8 chr1 142162636 142162767 -55032665 - B3A SINE B2 -45 153 1 2 1669 181 226 45 61 chr1 142163419 142163485 -55031947 - MER5A DNA MER1_type 0 189 125 2 1669 243 306 28 0 chr1 142163708 142163780 -55031652 + B4 SINE B4 2 75 -217 2 1669 1106 215 53 131 chr1 142163857 142164216 -55031216 - ORR1E LTR MaLR -25 334 4 2 1669 401 370 0 0 chr1 142164297 142164462 -55030970 + (CA)n Simple_repeat Simple_repeat 2 166 0 2 1669 317 290 48 34 chr1 142165420 142165564 -55029868 - MIR SINE MIR -96 180 41 2 1669 22 35 0 0 chr1 142165929 142165958 -55029474 + AT_rich Low_complexity Low_complexity 1 29 0 2 1669 257 109 18 0 chr1 142165995 142166050 -55029382 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 2 1669 428 104 0 50 chr1 142166157 142166250 -55029182 + MTC LTR MaLR 294 420 -1 2 1669 21 0 0 0 chr1 142167945 142167966 -55027466 + AT_rich Low_complexity Low_complexity 1 21 0 2 1669 473 236 135 37 chr1 142167984 142168147 -55027285 - B3A SINE B2 -17 181 3 2 1669 4161 62 4 27 chr1 142168441 142169004 -55026428 + L1_Mus2 LINE L1 6016 6565 -1 2 1669 322 133 0 88 chr1 142169112 142169203 -55026229 - RMER17C LTR ERVK -137 273 191 2 1669 25 0 0 0 chr1 142169453 142169478 -55025954 + AT_rich Low_complexity Low_complexity 1 25 0 2 1669 37 0 0 0 chr1 142169487 142169524 -55025908 + AT_rich Low_complexity Low_complexity 1 37 0 2 1669 291 336 7 34 chr1 142170815 142170963 -55024469 + RSINE1 SINE B4 5 148 -17 2 1669 253 296 14 0 chr1 142171782 142171853 -55023579 + ID4_ SINE ID 1 72 -11 2 1669 3087 84 0 0 chr1 142172377 142172782 -55022650 + MTB_Mm LTR MaLR 3 407 0 2 1669 245 319 14 14 chr1 142173212 142173282 -55022150 + B3A SINE B2 10 79 -119 2 1669 31 44 0 0 chr1 142173352 142173397 -55022035 + AT_rich Low_complexity Low_complexity 1 45 0 2 1669 384 40 0 0 chr1 142173397 142173447 -55021985 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1669 24 77 0 0 chr1 142173857 142173909 -55021523 + AT_rich Low_complexity Low_complexity 1 52 0 2 1669 234 207 83 24 chr1 142173910 142173994 -55021438 + L1M4 LINE L1 4866 4954 -1192 2 1669 356 296 133 47 chr1 142174012 142174374 -55021058 + L1MD LINE L1 4974 5366 -780 2 1669 702 286 26 0 chr1 142174418 142174649 -55020783 + L1_Mur3 LINE L1 4395 4631 -1249 2 1669 329 300 19 39 chr1 142174955 142175239 -55020193 + L1_Rod LINE L1 4851 5107 -740 2 1669 643 24 12 12 chr1 142175359 142175445 -55019987 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 2 1669 390 243 278 0 chr1 142175559 142175728 -55019704 - B3 SINE B2 0 216 1 2 1669 21 0 0 0 chr1 142176235 142176256 -55019176 + AT_rich Low_complexity Low_complexity 1 21 0 2 1669 233 277 0 15 chr1 142177224 142177290 -55018142 + GA-rich Low_complexity Low_complexity 5 69 0 2 1669 848 82 8 0 chr1 142177518 142177640 -55017792 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 1669 918 51 0 0 chr1 142177640 142177758 -55017674 - B1_Mus1 SINE Alu -12 136 19 2 1669 355 248 62 116 chr1 142177758 142177786 -55017646 - B4A SINE B4 -77 215 78 2 1669 427 296 114 11 chr1 142178898 142179178 -55016254 - L1M2 LINE L1 -592 5699 5391 2 1669 520 238 229 39 chr1 142179396 142179759 -55015673 + Lx7 LINE L1 7245 7676 -20 2 1669 22 35 0 0 chr1 142179909 142179938 -55015494 + AT_rich Low_complexity Low_complexity 1 29 0 2 1669 650 75 11 0 chr1 142180542 142180635 -55014797 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 2 1669 680 324 34 44 chr1 142181660 142181954 -55013478 - B4A SINE B4 0 292 2 2 1669 660 300 108 26 chr1 142181977 142182513 -55012919 - L1MA7 LINE L1 -421 5870 5279 2 1669 6483 35 1 0 chr1 142182513 142183284 -55012148 + L1Md_T LINE L1 5809 6580 -2 2 1669 660 292 127 72 chr1 142183284 142183782 -55011650 - L1MA7 LINE L1 -865 5278 4728 2 1669 587 280 114 43 chr1 142184109 142184729 -55010703 - L1MA7 LINE L1 -1399 4744 4081 2 1669 596 297 96 41 chr1 142185422 142185840 -55009592 - L1MA7 LINE L1 -2086 4057 3617 2 1669 589 347 77 59 chr1 142185840 142185857 -55009575 - MT2A LTR ERVL -1 532 516 2 1669 230 0 33 0 chr1 142185857 142185887 -55009545 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1669 589 347 77 59 chr1 142185887 142186377 -55009055 - MT2A LTR ERVL -18 515 17 2 1669 1156 285 97 43 chr1 142186602 142187067 -55008365 - MER67C LTR ERV1 -99 612 123 2 1669 232 190 17 0 chr1 142187137 142187195 -55008237 + T-rich Low_complexity Low_complexity 5 63 0 2 1669 261 302 0 0 chr1 142188819 142188882 -55006550 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1669 180 0 0 0 chr1 142189025 142189045 -55006387 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1669 38 22 0 0 chr1 142190573 142190618 -55004814 + AT_rich Low_complexity Low_complexity 1 45 0 2 1669 204 125 0 0 chr1 142192396 142192428 -55003004 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1669 760 191 22 44 chr1 142194644 142194825 -55000607 - RMER19C LTR ERVK -4 607 431 2 1669 2111 80 16 16 chr1 142195403 142195710 -54999722 - L1_Mus3 LINE L1 -2 6636 6330 2 1669 1062 0 0 0 chr1 142195809 142195927 -54999505 + (TTCCC)n Simple_repeat Simple_repeat 1 118 0 2 1669 658 213 18 0 chr1 142195929 142196098 -54999334 + CT-rich Low_complexity Low_complexity 4 175 0 2 1669 1241 153 14 0 chr1 142196123 142196332 -54999100 - Lx2 LINE L1 -11 6986 6775 2 1669 6312 154 31 3 chr1 142196332 142197708 -54997724 - Lx2 LINE L1 -354 6643 5223 2 1669 21 0 0 0 chr1 142197853 142197874 -54997558 + AT_rich Low_complexity Low_complexity 1 21 0 2 1669 405 286 18 9 chr1 142197978 142198087 -54997345 - MTE2b LTR MaLR -18 361 252 2 1669 560 231 198 55 chr1 142198087 142198325 -54997107 - RLTR10A LTR ERVK 0 411 140 2 1669 1775 270 35 32 chr1 142198365 142199317 -54996115 - RLTR45-int LTR ERVK -202 7042 5174 2 1669 529 212 4 4 chr1 142199320 142199462 -54995970 - MMERVK10C-int LTR ERVK -3768 3813 3713 2 1669 351 276 27 27 chr1 142199512 142199661 -54995771 - IAP-d-int LTR ERVK -4153 2389 2241 2 1669 291 223 70 60 chr1 142199877 142199977 -54995455 - RLTR45-int LTR ERVK -1554 433 333 2 1669 565 238 184 50 chr1 142199977 142200216 -54995216 - RLTR10A LTR ERVK -1 410 140 2 1669 321 326 158 56 chr1 142200221 142200455 -54994977 - MTE2b LTR MaLR -87 292 35 2 1669 189 74 0 0 chr1 142200879 142200906 -54994526 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1669 23 0 0 0 chr1 142202438 142202461 -54992971 + AT_rich Low_complexity Low_complexity 1 23 0 2 1669 2643 126 5 5 chr1 142202471 142202879 -54992553 + Lx3A LINE L1 6498 6905 -76 2 1669 23 0 0 0 chr1 142202879 142202902 -54992530 + AT_rich Low_complexity Low_complexity 1 23 0 2 1669 487 208 0 28 chr1 142203190 142203299 -54992133 - Lx7 LINE L1 -660 7036 6931 2 1669 622 122 8 17 chr1 142203994 142204111 -54991321 + (TCCC)n Simple_repeat Simple_repeat 3 118 0 3 1669 260 254 0 31 chr1 142204112 142204177 -54991255 - PB1D10 SINE Alu -45 72 10 3 1669 813 307 36 25 chr1 142204729 142205002 -54990430 + B4 SINE B4 40 278 -14 3 1669 2528 170 2 115 chr1 142205363 142205955 -54989477 + RLTR24 LTR ERV1 5 529 0 3 1669 293 285 71 56 chr1 142206039 142206236 -54989196 - L1M5 LINE L1 -348 5816 5617 3 1669 259 180 0 16 chr1 142206319 142206381 -54989051 + A-rich Low_complexity Low_complexity 3 63 0 3 1669 311 316 13 13 chr1 142206464 142206618 -54988814 + L1MB8 LINE L1 6020 6173 -5 3 1669 466 322 34 28 chr1 142206706 142206876 -54988556 - B3 SINE B2 -16 200 22 3 1669 471 18 0 0 chr1 142207716 142207772 -54987660 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1669 264 357 74 13 chr1 142207994 142208292 -54987140 - L1MD LINE L1 -381 5861 5546 3 208 39325 32 2 6 chr1 142208483 142214727 -54980705 - L1Md_T LINE L1 -1 6581 361 3 1670 4569 71 2 8 chr1 142214820 142215419 -54980013 + L1_Mus1 LINE L1 5971 6565 -2 3 1670 231 61 0 0 chr1 142215572 142215605 -54979827 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1670 1406 70 22 0 chr1 142215935 142216120 -54979312 - B2_Mm2 SINE B2 -6 189 1 3 1670 738 87 0 0 chr1 142216137 142216240 -54979192 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 3 1670 475 246 42 7 chr1 142216242 142216385 -54979047 - Lx6 LINE L1 -4 7456 7309 3 1670 1106 42 34 27 chr1 142216437 142216583 -54978849 - B1_Mm SINE Alu 0 147 1 3 1670 975 156 12 6 chr1 142216586 142216754 -54978678 - URR1A DNA MER1_type 0 226 58 3 1670 967 266 78 19 chr1 142217859 142218285 -54977147 - L1MA4 LINE L1 -106 6194 5744 3 1670 740 284 31 5 chr1 142218610 142218801 -54976631 + B3 SINE B2 15 210 -6 3 1670 883 274 11 180 chr1 142219210 142219660 -54975772 - ORR1D1 LTR MaLR 0 374 1 3 1670 510 17 0 0 chr1 142221474 142221533 -54973899 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 3 1670 1158 160 10 0 chr1 142221533 142221733 -54973699 - Lx2 LINE L1 -31 6966 6765 3 1670 4922 125 18 14 chr1 142221722 142222508 -54972924 - Lx2 LINE L1 -352 6645 5857 3 1670 5341 128 14 11 chr1 142222518 142223620 -54971812 - L1VL4 LINE L1 -2357 1202 101 3 1670 477 0 0 0 chr1 142224282 142224335 -54971097 + (GGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1670 22 35 0 0 chr1 142225801 142225830 -54969602 + AT_rich Low_complexity Low_complexity 1 29 0 3 1670 489 299 131 0 chr1 142225860 142225997 -54969435 - B3 SINE B2 -60 156 2 3 1670 234 0 0 0 chr1 142226350 142226376 -54969056 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 1670 917 343 55 6 chr1 142228105 142228448 -54966984 - MTE2b LTR MaLR 0 379 20 3 1670 280 294 65 0 chr1 142228443 142228535 -54966897 - MTE2b LTR MaLR -281 98 1 3 1670 304 125 15 15 chr1 142229066 142229131 -54966301 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1670 435 130 0 0 chr1 142231130 142231207 -54964225 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 3 1670 207 286 40 3 chr1 142231644 142231743 -54963689 + MIRb SINE MIR 65 169 -107 3 1670 204 328 15 0 chr1 142233359 142233426 -54962006 + CT-rich Low_complexity Low_complexity 1 68 0 3 1670 22 35 0 0 chr1 142233916 142233945 -54961487 + AT_rich Low_complexity Low_complexity 1 29 0 3 1670 195 348 44 29 chr1 142234283 142234351 -54961081 - L2b LINE L2 -37 3338 3270 3 1670 384 104 0 0 chr1 142234596 142234663 -54960769 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 1670 403 292 56 35 chr1 142236035 142236177 -54959255 - L2b LINE L2 -927 2492 2348 3 1670 285 29 0 0 chr1 142236603 142236637 -54958795 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 3 1670 531 112 0 0 chr1 142236637 142236717 -54958715 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 3 1670 197 77 51 0 chr1 142236720 142236759 -54958673 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1670 704 181 65 0 chr1 142236759 142236897 -54958535 - B1_Mus2 SINE Alu 0 147 1 3 1670 417 253 21 10 chr1 142236911 142237007 -54958425 + MLT1B LTR MaLR 29 125 -265 3 1670 228 205 0 0 chr1 142237167 142237206 -54958226 + (TCCTG)n Simple_repeat Simple_repeat 2 40 0 3 1670 522 0 0 0 chr1 142237238 142237296 -54958136 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1670 828 100 0 0 chr1 142237548 142237668 -54957764 + (TCCTG)n Simple_repeat Simple_repeat 1 120 0 3 1670 358 290 65 0 chr1 142238006 142238113 -54957319 - B3A SINE B2 -84 114 1 3 1670 352 300 132 39 chr1 142239208 142239465 -54955967 - L1ME3B LINE L1 -339 5901 5621 3 1670 885 329 74 17 chr1 142239605 142240078 -54955354 + RMER5 LTR ERV1 33 532 -2 3 1670 1180 229 15 11 chr1 142240671 142240945 -54954487 - Lx9 LINE L1 -179 7465 7191 3 1670 383 114 29 0 chr1 142241462 142241532 -54953900 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 3 1670 325 336 73 16 chr1 142241645 142241769 -54953663 - Tigger5 DNA MER2_type -2172 234 104 3 1670 387 302 158 50 chr1 142242297 142242499 -54952933 + Tigger5 DNA MER2_type 26 249 -2157 3 1670 357 296 67 100 chr1 142242520 142242772 -54952660 - MLT1C LTR MaLR -207 260 3 3 1670 225 151 23 11 chr1 142242965 142243052 -54952380 + A-rich Low_complexity Low_complexity 2 89 0 3 1670 204 102 40 20 chr1 142244943 142244993 -54950439 + GA-rich Low_complexity Low_complexity 3 53 0 3 1670 309 250 19 28 chr1 142245270 142245377 -54950055 + CT-rich Low_complexity Low_complexity 3 108 0 3 1670 22 0 0 0 chr1 142246581 142246603 -54948829 + AT_rich Low_complexity Low_complexity 1 22 0 3 1670 527 323 39 48 chr1 142248214 142248523 -54946909 + Lx8 LINE L1 7151 7456 -17 3 1670 3682 40 2 0 chr1 142248688 142249135 -54946297 - L1Md_T LINE L1 -1 6581 6134 3 1670 407 132 0 56 chr1 142249316 142249388 -54946044 + L1_Mus4 LINE L1 6161 6228 -408 3 1670 2886 45 0 0 chr1 142250035 142250393 -54945039 - L1Md_F2 LINE L1 -12 6570 6213 3 1670 987 110 7 0 chr1 142251912 142252057 -54943375 - B1_Mus1 SINE Alu 0 148 3 3 1670 215 363 82 66 chr1 142252463 142252829 -54942603 + L2 LINE L2 2376 2747 -672 3 1670 322 21 0 41 chr1 142252862 142252911 -54942521 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1670 2727 148 72 0 chr1 142252917 142253390 -54942042 - Lx3B LINE L1 -4 6969 6463 3 1670 213 39 0 0 chr1 142253559 142253585 -54941847 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1670 225 217 17 0 chr1 142255103 142255163 -54940269 + (TTA)n Simple_repeat Simple_repeat 1 61 0 3 1670 234 295 179 0 chr1 142255164 142255242 -54940190 + MTE2b LTR MaLR 231 322 -57 3 1670 225 94 0 0 chr1 142255619 142255651 -54939781 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1670 186 43 0 0 chr1 142256326 142256349 -54939083 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1670 26 64 0 0 chr1 142257131 142257178 -54938254 + AT_rich Low_complexity Low_complexity 1 47 0 3 1670 794 260 39 0 chr1 142257485 142257689 -54937743 - B3 SINE B2 -4 212 1 3 1670 21 0 0 0 chr1 142258885 142258906 -54936526 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 892 172 172 0 chr1 142260459 142260651 -54934781 + URR1B DNA MER1_type 1 225 0 3 1670 21 0 0 0 chr1 142260817 142260838 -54934594 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 362 348 92 0 chr1 142261234 142261375 -54934057 + MER58A DNA MER1_type 43 196 -28 3 1670 182 192 0 19 chr1 142261953 142262006 -54933426 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1670 21 0 0 0 chr1 142262490 142262511 -54932921 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 25 0 0 0 chr1 142263047 142263072 -54932360 + AT_rich Low_complexity Low_complexity 1 25 0 3 1670 301 260 40 40 chr1 142263072 142263172 -54932260 + ID_B1 SINE B4 124 223 -1 3 1670 228 170 0 19 chr1 142263173 142263270 -54932162 + A-rich Low_complexity Low_complexity 1 95 0 3 1670 1592 162 29 25 chr1 142263581 142263897 -54931535 + Lx2A LINE L1 6685 7001 -7 3 1670 705 56 0 0 chr1 142264265 142264355 -54931077 + (GGA)n Simple_repeat Simple_repeat 3 92 0 3 1670 4548 66 0 7 chr1 142264357 142264950 -54930482 + L1_Mus2 LINE L1 5978 6566 0 3 1670 21 0 0 0 chr1 142265397 142265418 -54930014 + AT_rich Low_complexity Low_complexity 1 21 0 3 1670 26 0 0 0 chr1 142266027 142266053 -54929379 + AT_rich Low_complexity Low_complexity 1 26 0 3 1670 23 33 0 0 chr1 142266099 142266129 -54929303 + AT_rich Low_complexity Low_complexity 1 30 0 3 1670 1629 280 68 6 chr1 142266788 142267319 -54928113 + Lx9 LINE L1 6937 7638 -6 3 1670 237 162 29 14 chr1 142268604 142268673 -54926759 + (CATA)n Simple_repeat Simple_repeat 4 73 0 3 1670 180 276 141 54 chr1 142270272 142270364 -54925068 + L3b LINE CR1 372 471 -11 3 1670 318 267 19 38 chr1 142271122 142271227 -54924205 + MER45A DNA Tip100 75 177 -1 3 1670 21 36 0 0 chr1 142271280 142271308 -54924124 + AT_rich Low_complexity Low_complexity 1 28 0 3 1670 2626 101 5 17 chr1 142273286 142273689 -54921743 - Lx2 LINE L1 -352 6645 6248 3 1670 640 102 109 8 chr1 142273895 142274014 -54921418 + Lx LINE L1 6524 6654 0 3 1670 546 313 72 63 chr1 142274780 142275237 -54920195 + MuRRS4-int LTR ERV1 4380 4840 -223 3 1670 1088 332 78 59 chr1 142275994 142276921 -54918511 - ORR1E-int LTR MaLR -440 1140 18 3 1670 183 42 0 0 chr1 142276927 142276951 -54918481 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 3 1670 685 301 81 45 chr1 142276952 142277199 -54918233 - ORR1E LTR MaLR -20 339 84 3 1670 450 345 63 7 chr1 142277200 142277343 -54918089 + RSINE1 SINE B4 11 161 -4 3 1670 446 96 14 0 chr1 142277369 142277442 -54917990 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1670 228 304 18 0 chr1 142277474 142277530 -54917902 - ORR1E LTR MaLR -267 92 36 3 1670 225 94 0 0 chr1 142277649 142277681 -54917751 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1670 35 41 0 0 chr1 142278489 142278538 -54916894 + AT_rich Low_complexity Low_complexity 1 49 0 4 1670 24 32 0 0 chr1 142278571 142278602 -54916830 + AT_rich Low_complexity Low_complexity 1 31 0 4 1670 31 76 0 0 chr1 142278659 142278725 -54916707 + AT_rich Low_complexity Low_complexity 1 66 0 4 1670 343 317 65 37 chr1 142279199 142279307 -54916125 - PB1D10 SINE Alu 0 117 7 4 1670 29 0 0 0 chr1 142279696 142279725 -54915707 + AT_rich Low_complexity Low_complexity 1 29 0 4 1670 673 274 33 89 chr1 142280201 142280538 -54914894 + RLTR15 LTR ERVK 26 343 -16 4 1670 507 45 0 0 chr1 142280755 142280821 -54914611 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1670 258 239 0 0 chr1 142280822 142280893 -54914539 + GA-rich Low_complexity Low_complexity 3 73 0 4 1670 22 0 0 0 chr1 142281047 142281069 -54914363 + AT_rich Low_complexity Low_complexity 1 22 0 4 1670 462 292 107 0 chr1 142281406 142281584 -54913848 + B3 SINE B2 6 202 -14 4 1670 369 0 0 0 chr1 142281596 142281637 -54913795 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1670 225 0 0 0 chr1 142281712 142281737 -54913695 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1670 498 344 43 21 chr1 142281886 142282121 -54913311 - MamSINE1 SINE tRNA -28 262 23 4 1670 198 128 0 0 chr1 142282211 142282250 -54913182 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1670 550 333 20 15 chr1 142282878 142283082 -54912350 - Lx8 LINE L1 -1002 6471 6267 4 1670 608 207 0 16 chr1 142283350 142283532 -54911900 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 4 1670 905 319 132 55 chr1 142283532 142284811 -54910621 - Lx8 LINE L1 -1770 5926 4525 4 1670 423 56 0 0 chr1 142284902 142284956 -54910476 + (TATG)n Simple_repeat Simple_repeat 4 57 0 4 1670 357 221 81 0 chr1 142284956 142285042 -54910390 - PB1D9 SINE Alu 0 120 28 4 1670 269 345 76 21 chr1 142285071 142285216 -54910216 - Lx8 LINE L1 -1335 4548 4391 4 1670 21 0 0 0 chr1 142285296 142285317 -54910115 + AT_rich Low_complexity Low_complexity 1 21 0 4 1670 189 339 0 0 chr1 142285374 142285430 -54910002 + MIRm SINE MIR 213 268 -8 4 1670 192 125 0 0 chr1 142285948 142285980 -54909452 + (TAG)n Simple_repeat Simple_repeat 1 32 0 4 1670 2810 110 143 0 chr1 142285993 142286455 -54908977 - Lx3B LINE L1 0 6973 6446 4 1670 209 21 59 59 chr1 142286463 142286514 -54908918 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1670 350 40 0 39 chr1 142286514 142286566 -54908866 - B1_Mm SINE Alu 0 147 98 4 1670 1836 175 100 0 chr1 142287830 142288179 -54907253 - ORR1B1 LTR MaLR -10 384 1 4 1670 1861 121 17 69 chr1 142291221 142291568 -54903864 + ORR1A4 LTR MaLR 1 329 0 4 1670 833 346 36 3 chr1 142291599 142291906 -54903526 - MTE2b LTR MaLR -2 377 61 4 1670 2100 181 40 88 chr1 142292811 142293392 -54902040 - RLTR31_Mur LTR ERVK 0 553 1 4 1670 22 56 0 0 chr1 142293439 142293475 -54901957 + AT_rich Low_complexity Low_complexity 1 36 0 4 1670 349 356 66 20 chr1 142293710 142294014 -54901418 - L2 LINE L2 -585 2834 2517 4 1670 630 109 29 14 chr1 142294825 142294964 -54900468 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1670 604 134 30 7 chr1 142295001 142295136 -54900296 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 1670 192 309 73 0 chr1 142295930 142295998 -54899434 + MIRc SINE MIR 179 251 -17 4 1670 1185 305 158 14 chr1 142296409 142297098 -54898334 - Lx8 LINE L1 -86 7387 6600 4 1670 2694 203 81 62 chr1 142297148 142297256 -54898176 + ORR1A4-int LTR MaLR 2 99 -1864 4 1670 1114 50 7 0 chr1 142297256 142297396 -54898036 - B1_Mus1 SINE Alu -7 141 1 4 1670 2694 203 81 62 chr1 142297396 142298007 -54897425 + ORR1A4-int LTR MaLR 100 734 -1229 4 1670 1011 170 95 109 chr1 142297994 142298037 -54897395 + ORR1A4-int LTR MaLR 1230 1283 -226 4 1670 486 0 0 0 chr1 142298037 142298091 -54897341 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1670 1732 203 14 25 chr1 142298091 142298653 -54896779 + ORR1A4 LTR MaLR 1 386 -8 4 1670 4694 162 31 3 chr1 142298903 142299762 -54895670 - L1_Mur2 LINE L1 -241 5636 4754 4 1670 261 0 0 0 chr1 142299794 142299823 -54895609 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1670 285 245 43 43 chr1 142299910 142300045 -54895387 + L1_Rod LINE L1 5475 5621 -676 4 1670 609 83 0 0 chr1 142300116 142300200 -54895232 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1670 425 253 191 50 chr1 142300600 142300920 -54894512 - Lx9 LINE L1 0 7644 7280 4 1670 1607 232 150 0 chr1 142301034 142301473 -54893959 + Lx9 LINE L1 6862 7366 -278 4 1670 554 189 44 6 chr1 142301517 142301677 -54893755 + Lx9 LINE L1 7479 7644 0 4 1670 893 138 0 14 chr1 142302321 142302461 -54892971 - B1_Mus2 SINE Alu -9 138 1 4 1670 23 0 0 0 chr1 142303551 142303574 -54891858 + AT_rich Low_complexity Low_complexity 1 23 0 4 1670 34 65 0 0 chr1 142303906 142303968 -54891464 + AT_rich Low_complexity Low_complexity 1 62 0 4 1670 429 20 0 0 chr1 142304828 142304878 -54890554 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1670 24 0 0 0 chr1 142305047 142305071 -54890361 + AT_rich Low_complexity Low_complexity 1 24 0 4 1670 198 0 0 0 chr1 142305158 142305180 -54890252 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1670 1344 287 90 26 chr1 142305208 142305777 -54889655 - Lx7 LINE L1 -280 7416 6812 4 1670 672 277 68 15 chr1 142306524 142306729 -54888703 - B3 SINE B2 0 216 1 4 1670 822 88 0 0 chr1 142306946 142307060 -54888372 - B2_Mm2 SINE B2 -80 115 2 4 1670 1050 55 0 48 chr1 142307509 142307698 -54887734 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1670 4050 70 0 2 chr1 142308169 142308702 -54886730 - L1_Mus2 LINE L1 -2 6564 6033 4 1670 972 87 93 0 chr1 142308729 142308879 -54886553 + B2_Mm2 SINE B2 6 169 -26 4 1670 23 54 0 0 chr1 142309477 142309514 -54885918 + AT_rich Low_complexity Low_complexity 1 37 0 4 1670 745 198 148 6 chr1 142309516 142309699 -54885733 - Lx3B LINE L1 0 6973 6765 4 1670 213 413 13 0 chr1 142311917 142311992 -54883440 - RSINE1 SINE B4 -85 80 5 4 1670 557 136 10 0 chr1 142312679 142312782 -54882650 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 1670 354 127 0 0 chr1 142312987 142313058 -54882374 + (T)n Simple_repeat Simple_repeat 1 71 0 4 1670 216 0 0 0 chr1 142313081 142313105 -54882327 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1670 21 36 0 0 chr1 142313121 142313149 -54882283 + AT_rich Low_complexity Low_complexity 1 28 0 4 1670 249 345 169 17 chr1 142313164 142313282 -54882150 + RSINE1 SINE B4 2 137 -28 4 1670 195 42 0 0 chr1 142313287 142313311 -54882121 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1670 24 0 0 0 chr1 142313370 142313394 -54882038 + AT_rich Low_complexity Low_complexity 1 24 0 4 1670 202 371 36 43 chr1 142313474 142313612 -54881820 - MIRb SINE MIR -48 220 84 4 1670 317 305 43 48 chr1 142313614 142313800 -54881632 + CYRA11_Mm Unknown Y-chromosome 159 343 -274 4 1670 1007 170 5 11 chr1 142313644 142313828 -54881604 - URR1B DNA MER1_type -18 207 25 4 1670 319 364 61 101 chr1 142313941 142314219 -54881213 - B4 SINE B4 0 292 26 4 1670 1888 191 170 16 chr1 142314255 142314708 -54880724 - RLTR11A LTR ERVK -5 523 1 4 1670 26 0 0 0 chr1 142314714 142314740 -54880692 + AT_rich Low_complexity Low_complexity 1 26 0 4 1670 31 58 0 0 chr1 142314814 142314866 -54880566 + AT_rich Low_complexity Low_complexity 1 52 0 4 1670 22 35 0 0 chr1 142315156 142315185 -54880247 + AT_rich Low_complexity Low_complexity 1 29 0 4 1670 24 85 0 0 chr1 142315848 142315907 -54879525 + AT_rich Low_complexity Low_complexity 1 59 0 4 1670 453 36 0 0 chr1 142315968 142316023 -54879409 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1670 29 78 0 0 chr1 142316371 142316435 -54878997 + AT_rich Low_complexity Low_complexity 1 64 0 4 1670 301 301 19 0 chr1 142316737 142316840 -54878592 - L1MA10 LINE L1 -40 6294 6190 4 1670 324 0 0 0 chr1 142316854 142316890 -54878542 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1670 204 40 0 0 chr1 142317023 142317048 -54878384 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1670 1030 106 0 0 chr1 142317574 142317715 -54877717 + B1_Mus1 SINE Alu 2 142 -6 4 1670 234 0 0 0 chr1 142317727 142317753 -54877679 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1670 1304 81 43 0 chr1 142317753 142317938 -54877494 + B2_Mm2 SINE B2 3 195 0 4 1670 409 151 27 0 chr1 142318104 142318177 -54877255 - RLTR25A LTR ERVK 0 1103 1029 4 1670 235 281 63 63 chr1 142318131 142318226 -54877206 + LTR32 LTR ERVL 99 193 -278 4 1670 201 74 0 0 chr1 142318285 142318312 -54877120 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1670 468 260 68 14 chr1 142318796 142318944 -54876488 - MLT1A1 LTR MaLR 0 408 253 4 1670 281 306 63 27 chr1 142318944 142319055 -54876377 - MLT1A1 LTR MaLR -275 133 19 4 1670 458 399 79 14 chr1 142319149 142319441 -54875991 - MLT-int LTR MaLR -317 1418 1108 4 1670 308 344 16 8 chr1 142319750 142319876 -54875556 - MLT-int LTR MaLR -962 773 647 4 1670 343 354 80 26 chr1 142319876 142320178 -54875254 - MLT1A1-int LTR MaLR -732 639 322 4 1670 445 389 10 65 chr1 142320429 142320723 -54874709 - MLT1A1 LTR MaLR -38 327 50 4 1670 328 216 40 59 chr1 142320995 142321123 -54874309 - MLT1A1 LTR MaLR -46 421 260 4 1670 958 105 8 0 chr1 142322791 142322924 -54872508 + B1_Mus2 SINE Alu 2 135 -12 4 1670 359 16 62 16 chr1 142322925 142322989 -54872443 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 4 1670 409 308 37 42 chr1 142323983 142324038 -54871394 - B3 SINE B2 0 216 167 4 1670 444 19 0 0 chr1 142324038 142324091 -54871341 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1670 526 308 37 42 chr1 142324091 142324252 -54871180 - B3A SINE B2 -50 166 1 4 1670 28 48 0 0 chr1 142324633 142324675 -54870757 + AT_rich Low_complexity Low_complexity 1 42 0 4 1670 621 123 0 0 chr1 142327632 142327738 -54867694 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 1670 243 0 0 0 chr1 142328582 142328609 -54866823 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1670 7621 116 95 3 chr1 142328610 142329951 -54865481 - Lx3C LINE L1 -16 6960 5494 4 1670 279 0 0 0 chr1 142329952 142329983 -54865449 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 1670 1019 45 0 43 chr1 142329991 142330005 -54865427 - B1_Mm SINE Alu 0 147 139 4 1670 603 39 0 0 chr1 142330005 142330083 -54865349 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 4 1670 1019 45 0 43 chr1 142330083 142330208 -54865224 - B1_Mm SINE Alu -9 138 14 4 1670 1690 152 3 38 chr1 142330212 142330526 -54864906 - Lx3C LINE L1 -388 5498 5196 4 1670 1580 211 38 94 chr1 142330526 142330570 -54864862 - RLTR20B3 LTR ERVK -52 525 482 4 1670 354 23 0 0 chr1 142330570 142330613 -54864819 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1670 1580 217 39 92 chr1 142330613 142331076 -54864356 - RLTR20B3 LTR ERVK -96 481 1 4 1670 258 320 122 7 chr1 142331346 142331494 -54863938 + HAL1 LINE L1 48 212 -2295 5 1670 201 184 0 20 chr1 142332262 142332312 -54863120 + A-rich Low_complexity Low_complexity 3 51 0 5 1670 27 0 0 0 chr1 142332699 142332726 -54862706 + AT_rich Low_complexity Low_complexity 1 27 0 5 1670 408 214 0 0 chr1 142332843 142332960 -54862472 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 1670 622 154 34 0 chr1 142332974 142333123 -54862309 + (TA)n Simple_repeat Simple_repeat 2 155 0 5 1670 21 0 0 0 chr1 142335094 142335115 -54860317 + AT_rich Low_complexity Low_complexity 1 21 0 5 1670 2349 264 68 2 chr1 142336071 142336660 -54858772 - Lx6 LINE L1 -15 7445 6818 5 1670 905 306 0 11 chr1 142336660 142336921 -54858511 - Lx6 LINE L1 -1028 6432 6175 5 1670 1289 217 55 12 chr1 142336930 142337257 -54858175 - L1_Mur3 LINE L1 -462 5418 5078 5 1670 371 312 75 94 chr1 142338191 142338521 -54856911 + MLT1B LTR MaLR 36 359 -31 5 1670 306 0 0 0 chr1 142338521 142338555 -54856877 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1670 371 312 75 94 chr1 142338555 142338585 -54856847 + MLT1B LTR MaLR 360 389 -1 5 1670 492 18 0 0 chr1 142340484 142340541 -54854891 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1670 213 244 111 37 chr1 142341697 142341778 -54853654 + B4A SINE B4 48 134 -158 5 1670 424 289 73 70 chr1 142341883 142342371 -54853061 - L1MC3 LINE L1 -328 6005 5468 5 1670 31 44 0 0 chr1 142342507 142342552 -54852880 + AT_rich Low_complexity Low_complexity 1 45 0 5 1670 23 54 0 0 chr1 142342630 142342667 -54852765 + AT_rich Low_complexity Low_complexity 1 37 0 5 1670 565 310 63 0 chr1 142342713 142342887 -54852545 - B3A SINE B2 -13 185 1 5 1670 544 321 104 44 chr1 142342918 142343536 -54851896 - L1MEf LINE L1 -4110 2090 1436 5 1670 240 59 0 0 chr1 142343990 142344024 -54851408 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 208 3260 32 7 12 chr1 142344162 142344570 -54850862 - L1Md_F3 LINE L1 0 6584 6179 5 1671 304 368 34 27 chr1 142344662 142344810 -54850622 - L1MEf LINE L1 -5896 198 50 5 1671 236 387 155 32 chr1 142345537 142345756 -54849676 - MLT1A LTR MaLR -90 284 39 5 1671 343 284 14 56 chr1 142345918 142346060 -54849372 + MER3 DNA MER1_type 31 166 -43 5 1671 304 369 23 0 chr1 142346491 142346621 -54848811 + ID_B1 SINE B4 84 216 -8 5 1671 21 36 0 0 chr1 142346714 142346742 -54848690 + AT_rich Low_complexity Low_complexity 1 28 0 5 1671 180 0 0 0 chr1 142346931 142346951 -54848481 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1671 2038 83 15 46 chr1 142349760 142349979 -54845453 - L1_Mus3 LINE L1 0 6638 6430 5 1671 2895 67 34 24 chr1 142349979 142350393 -54845039 - BGLII LTR ERVK -3 418 1 5 1671 2038 83 15 46 chr1 142350393 142350502 -54844930 - L1_Mus3 LINE L1 -209 6429 6320 5 1671 31 26 0 0 chr1 142350799 142350837 -54844595 + AT_rich Low_complexity Low_complexity 1 38 0 5 1671 198 0 0 0 chr1 142351164 142351186 -54844246 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1671 297 0 0 0 chr1 142351186 142351218 -54844214 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1671 2504 118 36 3 chr1 142351740 142352124 -54843308 - Lx LINE L1 0 6654 6258 5 1671 196 195 0 49 chr1 142354079 142354160 -54841272 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 5 1671 231 340 48 58 chr1 142355587 142355690 -54839742 - L2 LINE L2 -671 2748 2647 5 1671 180 27 26 51 chr1 142356223 142356262 -54839170 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1671 998 124 0 0 chr1 142356309 142356454 -54838978 + B2_Mm2 SINE B2 1 145 -50 5 1671 195 42 0 0 chr1 142356455 142356479 -54838953 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 5 1671 6641 63 40 2 chr1 142356487 142357382 -54838050 - L1Md_F2 LINE L1 0 6582 5659 5 1671 50 18 0 0 chr1 142357396 142357453 -54837979 + AT_rich Low_complexity Low_complexity 1 57 0 5 1671 344 355 86 17 chr1 142357736 142357911 -54837521 - MLT1E LTR MaLR -210 443 255 5 1671 5540 84 6 6 chr1 142357922 142359262 -54836170 - L1Md_F2 LINE L1 -6 6632 5293 5 1671 2104 78 7 17 chr1 142359262 142359560 -54835872 + L1Md_F2 LINE L1 6285 6579 -3 5 1671 23 0 0 0 chr1 142359834 142359857 -54835575 + AT_rich Low_complexity Low_complexity 1 23 0 5 1671 360 0 0 0 chr1 142359929 142359969 -54835463 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1671 1158 162 44 12 chr1 142360037 142360287 -54835145 + L1_Mur2 LINE L1 2880 3137 -2740 5 1671 353 224 31 43 chr1 142361581 142361744 -54833688 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 5 1671 23 68 0 0 chr1 142361954 142361998 -54833434 + AT_rich Low_complexity Low_complexity 1 44 0 5 1671 615 397 75 5 chr1 142362187 142362559 -54832873 - MLT1F LTR MaLR -150 398 1 5 1671 339 291 0 12 chr1 142363104 142363184 -54832248 - B1F SINE Alu -45 104 26 5 1671 2906 71 2 41 chr1 142363190 142363602 -54831830 - MTA_Mm LTR MaLR 0 396 1 5 1671 917 251 9 0 chr1 142364359 142364582 -54830850 - URR1B DNA MER1_type 0 225 1 5 1671 1405 184 206 27 chr1 142364732 142365140 -54830292 - L1_Mus4 LINE L1 -6 6630 6150 5 1671 3832 76 21 0 chr1 142365497 142366009 -54829423 + L1Md_F2 LINE L1 6047 6569 -13 5 1671 429 167 0 0 chr1 142366187 142366265 -54829167 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 1671 335 219 24 0 chr1 142367378 142367460 -54827972 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1671 853 233 39 78 chr1 142368540 142368744 -54826688 - L1_Mur3 LINE L1 -861 5019 4814 5 1671 1063 86 0 7 chr1 142368744 142368885 -54826547 + B1_Mus1 SINE Alu 1 140 -8 5 1671 853 224 473 47 chr1 142368885 142369124 -54826308 - L1_Mur3 LINE L1 -1067 4813 4482 5 1671 2446 261 37 40 chr1 142369128 142370079 -54825353 + L1_Mur3 LINE L1 3547 4494 -1386 5 1671 21 57 0 0 chr1 142370081 142370116 -54825316 + AT_rich Low_complexity Low_complexity 1 35 0 5 1671 2285 246 137 21 chr1 142370445 142371258 -54824174 - Lx9 LINE L1 0 7644 6738 5 1671 1266 71 0 0 chr1 142371274 142371442 -54823990 + L1Md_T LINE L1 6415 6582 0 5 1671 7576 65 3 6 chr1 142371445 142372419 -54823013 - L1_Mus1 LINE L1 -9 6558 5588 5 1671 255 241 112 22 chr1 142372421 142372510 -54822922 - Lx9 LINE L1 -899 6745 6649 5 1671 255 31 0 0 chr1 142372515 142372547 -54822885 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1671 254 289 211 12 chr1 142372562 142372723 -54822709 - Lx2B LINE L1 -21 6979 6787 5 1671 1469 232 110 34 chr1 142372718 142373183 -54822249 - Lx9 LINE L1 -1023 6621 6122 5 1671 575 313 53 56 chr1 142373185 142373469 -54821963 - B4 SINE B4 -1 291 9 5 1671 267 348 90 30 chr1 142373531 142373697 -54821735 + L2 LINE L2 1448 1623 -1796 5 1671 416 242 83 8 chr1 142373898 142374019 -54821413 + MER3 DNA MER1_type 54 183 -26 5 1671 438 36 0 0 chr1 142374198 142374254 -54821178 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1671 865 50 0 16 chr1 142374480 142374601 -54820831 + (TTCTC)n Simple_repeat Simple_repeat 2 120 0 5 1671 920 238 70 18 chr1 142374838 142375065 -54820367 - MTC LTR MaLR 0 421 183 5 1671 562 163 0 11 chr1 142375079 142375172 -54820260 - MTC LTR MaLR -312 95 4 5 1671 3971 209 51 16 chr1 142375190 142376145 -54819287 - Lx7 LINE L1 -53 5827 4839 5 1671 4478 249 39 27 chr1 142376128 142377424 -54818008 + Lx7 LINE L1 5869 7179 -517 5 1671 239 346 0 0 chr1 142377712 142377790 -54817642 - BC1_Mm scRNA scRNA -60 92 15 5 1671 200 270 0 16 chr1 142378105 142378169 -54817263 + (TAG)n Simple_repeat Simple_repeat 3 65 0 5 1671 21 57 0 0 chr1 142380166 142380201 -54815231 + AT_rich Low_complexity Low_complexity 1 35 0 5 1671 1247 38 0 12 chr1 142381525 142381687 -54813745 + L1_Mus1 LINE L1 6408 6567 0 5 1671 1125 138 75 0 chr1 142381697 142381885 -54813547 + Lx LINE L1 6439 6640 -14 5 1671 413 328 46 21 chr1 142382621 142382861 -54812571 - L1M4 LINE L1 -535 5643 5398 5 1671 229 302 0 0 chr1 142383070 142383123 -54812309 - RSINE1 SINE B4 -109 56 4 5 1671 334 337 79 44 chr1 142383340 142383657 -54811775 - L1MC4a LINE L1 0 7882 7555 5 1671 633 38 0 0 chr1 142383657 142383737 -54811695 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 5 1671 3296 234 63 26 chr1 142383878 142384890 -54810542 - Lx5 LINE L1 0 6976 5899 5 1671 2381 135 8 0 chr1 142385143 142385522 -54809910 - L1_Mus4 LINE L1 -2 6634 6253 5 1671 706 113 0 0 chr1 142385524 142385630 -54809802 + L1_Mur2 LINE L1 4343 4448 -1429 5 1671 333 284 70 7 chr1 142385707 142385849 -54809583 + L1MC4a LINE L1 7193 7343 -539 5 1671 549 44 0 0 chr1 142386789 142386857 -54808575 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1671 321 47 0 0 chr1 142386909 142386952 -54808480 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1671 610 319 14 47 chr1 142387018 142387232 -54808200 + ID_B1 SINE B4 5 211 -13 5 1671 696 121 0 0 chr1 142387744 142387876 -54807556 + (TC)n Simple_repeat Simple_repeat 1 132 0 5 1671 234 91 0 0 chr1 142387876 142387909 -54807523 + (TATG)n Simple_repeat Simple_repeat 2 34 0 5 1671 512 314 69 29 chr1 142388051 142388297 -54807135 - MLT1B LTR MaLR -134 256 1 5 1671 227 336 45 91 chr1 142388477 142388492 -54806940 + B4 SINE B4 77 98 -194 5 1671 233 293 17 0 chr1 142388492 142388550 -54806882 + B1F2 SINE Alu 4 62 -87 5 1671 227 336 45 91 chr1 142388550 142388631 -54806801 + B4 SINE B4 99 223 -69 5 1671 279 164 0 0 chr1 142389851 142389912 -54805520 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1671 210 136 0 0 chr1 142389932 142389976 -54805456 + (CAT)n Simple_repeat Simple_repeat 3 46 0 5 1671 23 78 0 0 chr1 142390179 142390230 -54805202 + AT_rich Low_complexity Low_complexity 1 51 0 5 1671 42 65 0 0 chr1 142391039 142391116 -54804316 + AT_rich Low_complexity Low_complexity 1 77 0 5 1671 2123 59 116 0 chr1 142391657 142391700 -54803732 - ORR1A1 LTR MaLR -8 338 296 5 1671 5886 48 9 1 chr1 142391700 142392436 -54802996 + L1Md_F2 LINE L1 5841 6582 0 5 1671 2123 59 116 0 chr1 142392436 142392695 -54802737 - ORR1A1 LTR MaLR -51 295 2 5 1671 277 292 11 63 chr1 142393235 142393254 -54802178 - B4 SINE B4 -197 95 38 5 1671 369 235 0 0 chr1 142393254 142393322 -54802110 - ID4_ SINE ID -2 81 14 5 1671 1076 237 214 30 chr1 142394429 142394855 -54800577 - RMER15 LTR ERVL -43 532 29 5 1671 23 33 0 0 chr1 142395423 142395453 -54799979 + AT_rich Low_complexity Low_complexity 1 30 0 5 1671 1077 116 0 0 chr1 142395689 142395835 -54799597 - B1_Mus1 SINE Alu 0 148 3 5 1671 409 284 46 23 chr1 142396212 142396385 -54799047 - Lx9 LINE L1 -282 7362 7186 5 1671 4482 206 45 38 chr1 142396462 142397469 -54797963 - Lx5 LINE L1 -3 7047 6034 6 1671 2057 151 8 20 chr1 142397464 142397815 -54797617 - Lx2A1 LINE L1 -517 6491 6145 6 1671 666 170 21 21 chr1 142397802 142397946 -54797486 - Lx5 LINE L1 -1041 6009 5866 6 1671 5359 174 7 23 chr1 142397936 142398939 -54796493 + Lx5 LINE L1 4891 5877 0 6 1671 706 206 110 13 chr1 142399089 142399325 -54796107 + L1M2 LINE L1 4372 4630 -1513 6 1671 284 212 37 12 chr1 142399328 142399409 -54796023 + L1_Rod LINE L1 4646 4728 -1119 6 1671 442 189 9 9 chr1 142399414 142399521 -54795911 + GA-rich Low_complexity Low_complexity 2 108 0 6 1671 340 342 105 76 chr1 142400416 142400720 -54794712 + L2 LINE L2 2754 3066 -353 6 1671 216 0 0 0 chr1 142401024 142401048 -54794384 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 6 1671 1316 258 61 42 chr1 142401048 142401457 -54793975 - Lx6 LINE L1 -36 7424 7008 6 1671 1006 144 7 3 chr1 142401458 142401636 -54793796 - Lx5 LINE L1 -1240 5810 5652 6 1671 271 271 23 34 chr1 142402152 142402240 -54793192 - MTEa LTR MaLR -5 374 288 6 1671 262 362 53 47 chr1 142402315 142402486 -54792946 - MTEa LTR MaLR -182 177 6 6 1671 219 36 0 0 chr1 142402728 142402756 -54792676 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1671 605 105 11 0 chr1 142403169 142403264 -54792168 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1671 246 388 101 20 chr1 142403536 142403833 -54791599 - MLT1A0 LTR MaLR -38 327 7 6 1671 838 189 5 45 chr1 142405500 142405700 -54789732 - Lx LINE L1 -1 6653 6462 6 1671 26 30 0 0 chr1 142406552 142406585 -54788847 + AT_rich Low_complexity Low_complexity 1 33 0 6 1671 664 348 39 50 chr1 142407089 142407370 -54788062 + B4 SINE B4 1 278 -14 6 1671 429 319 95 79 chr1 142407618 142407985 -54787447 + MLT1B LTR MaLR 18 390 0 6 1671 536 302 0 0 chr1 142409027 142409166 -54786266 - B1_Mur1 SINE Alu -10 139 1 6 1671 243 0 0 0 chr1 142409264 142409291 -54786141 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1671 767 321 45 12 chr1 142409785 142410028 -54785404 - MTEa LTR MaLR -128 251 1 6 1671 22695 23 0 1 chr1 142411216 142413897 -54781535 + L1Md_T LINE L1 2908 5586 -297 6 1671 8936 6 0 3 chr1 142413897 142414896 -54780536 + L1Md_T LINE L1 5587 6582 0 6 1671 3456 126 23 0 chr1 142417314 142417831 -54777601 - Lx2 LINE L1 0 6997 6469 6 1671 432 0 0 0 chr1 142418642 142418690 -54776742 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1671 22 0 0 0 chr1 142418863 142418885 -54776547 + AT_rich Low_complexity Low_complexity 1 22 0 6 1671 234 149 0 41 chr1 142419225 142419274 -54776158 + T-rich Low_complexity Low_complexity 4 50 0 6 1671 999 89 7 46 chr1 142420798 142420951 -54774481 + B1_Mus1 SINE Alu 2 148 0 6 1671 200 59 0 29 chr1 142420951 142420986 -54774446 + (CAAAAA)n Simple_repeat Simple_repeat 6 39 0 6 1671 23 33 0 0 chr1 142421603 142421633 -54773799 + AT_rich Low_complexity Low_complexity 1 30 0 6 1671 25 102 0 0 chr1 142422025 142422113 -54773319 + AT_rich Low_complexity Low_complexity 1 88 0 6 1671 569 52 13 0 chr1 142423378 142423455 -54771977 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1671 593 272 33 24 chr1 142423494 142423705 -54771727 - B3 SINE B2 -3 213 1 6 1671 2004 126 67 12 chr1 142425513 142425859 -54769573 - Lx LINE L1 -3 6651 6287 6 1671 950 95 102 0 chr1 142428892 142429039 -54766393 - B2_Mm2 SINE B2 -32 163 2 6 1671 22 35 0 0 chr1 142429472 142429501 -54765931 + AT_rich Low_complexity Low_complexity 1 29 0 6 1671 426 65 0 0 chr1 142429849 142429911 -54765521 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1671 231 146 0 0 chr1 142432336 142432377 -54763055 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 6 1671 803 238 162 16 chr1 142432418 142432721 -54762711 + Lx9 LINE L1 7297 7643 -1 6 1671 23 0 0 0 chr1 142432984 142433007 -54762425 + AT_rich Low_complexity Low_complexity 1 23 0 6 1671 228 355 35 17 chr1 142433068 142433240 -54762192 + L2 LINE L2 667 841 -2578 6 1671 778 246 275 17 chr1 142434107 142434409 -54761023 - MTD LTR MaLR -34 385 6 6 1671 302 133 27 0 chr1 142434840 142434915 -54760517 + A-rich Low_complexity Low_complexity 2 78 0 6 1671 7186 161 59 81 chr1 142435253 142435513 -54759919 - RLTR21 LTR ERVK -8 1564 1303 6 1671 468 0 0 0 chr1 142435513 142435565 -54759867 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1671 7186 161 59 81 chr1 142435565 142436904 -54758528 - RLTR21 LTR ERVK -270 1302 1 6 1671 378 0 0 0 chr1 142437260 142437302 -54758130 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 6 1671 42 36 0 0 chr1 142437316 142437372 -54758060 + AT_rich Low_complexity Low_complexity 1 56 0 6 1671 462 157 0 0 chr1 142437374 142437457 -54757975 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 6 1671 216 0 0 0 chr1 142437988 142438012 -54757420 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1671 1101 76 0 33 chr1 142438033 142438183 -54757249 - B1_Mur4 SINE Alu -4 146 2 6 1671 663 320 51 0 chr1 142438480 142438655 -54756777 + ID_B1 SINE B4 15 198 -26 6 1671 181 57 0 54 chr1 142439017 142439054 -54756378 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 6 1671 227 265 0 0 chr1 142439397 142439446 -54755986 - ORR1C2 LTR MaLR -3 381 333 6 1671 182 37 37 0 chr1 142439448 142439475 -54755957 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 6 1671 422 155 36 72 chr1 142439475 142439614 -54755818 - Lx4A LINE L1 -11 7047 6914 6 1671 3092 154 12 6 chr1 142439615 142440130 -54755302 - Lx4A LINE L1 -304 6754 6237 6 1671 870 189 11 153 chr1 142440169 142440444 -54754988 - ORR1C2 LTR MaLR -148 236 1 6 1671 209 243 14 0 chr1 142440445 142440515 -54754917 + A-rich Low_complexity Low_complexity 2 72 0 6 1671 544 321 19 6 chr1 142440517 142440674 -54754758 + B3A SINE B2 8 166 -32 6 1671 333 0 0 0 chr1 142440674 142440711 -54754721 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1671 519 318 18 74 chr1 142440711 142440770 -54754662 + B3 SINE B2 164 212 -4 6 1671 522 0 0 0 chr1 142441352 142441410 -54754022 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1671 289 360 0 0 chr1 142441411 142441486 -54753946 - ID4_ SINE ID -7 76 2 6 1671 1262 292 56 41 chr1 142441767 142442250 -54753182 - RMER5 LTR ERV1 -9 525 36 6 1671 406 423 70 4 chr1 142443140 142443413 -54752019 + B4 SINE B4 1 291 -1 6 1671 183 80 0 0 chr1 142443442 142443467 -54751965 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1671 183 114 0 0 chr1 142443605 142443640 -54751792 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1671 32 0 0 0 chr1 142444712 142444744 -54750688 + AT_rich Low_complexity Low_complexity 1 32 0 6 1671 21 0 0 0 chr1 142444793 142444814 -54750618 + AT_rich Low_complexity Low_complexity 1 21 0 6 1671 35 54 0 0 chr1 142445111 142445167 -54750265 + AT_rich Low_complexity Low_complexity 1 56 0 6 1671 474 243 0 17 chr1 142447530 142447710 -54747722 + CT-rich Low_complexity Low_complexity 1 177 0 6 1671 189 0 0 0 chr1 142447718 142447739 -54747693 + (CTA)n Simple_repeat Simple_repeat 2 22 0 6 1671 900 0 0 0 chr1 142448473 142448573 -54746859 + (CAGAG)n Simple_repeat Simple_repeat 2 101 0 6 1671 317 333 104 0 chr1 142450770 142450905 -54744527 + MIR SINE MIR 6 154 -108 6 1671 363 44 0 0 chr1 142452052 142452097 -54743335 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1671 294 347 48 14 chr1 142452129 142452275 -54743157 - RSINE1 SINE B4 -14 151 1 6 1671 313 400 67 0 chr1 142453034 142453169 -54742263 - MLT1J1 LTR MaLR -265 179 36 6 1671 793 121 23 6 chr1 142453479 142453654 -54741778 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1671 300 53 0 0 chr1 142454095 142454133 -54741299 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 6 1671 1535 182 55 14 chr1 142454554 142454844 -54740588 + ORR1B2 LTR MaLR 66 367 0 6 1671 633 192 0 0 chr1 142454845 142454965 -54740467 - L1_Mur2 LINE L1 -1728 4149 4030 6 1671 1546 143 104 73 chr1 142456457 142456774 -54738658 - ORR1A4 LTR MaLR 0 329 3 6 1671 478 325 8 8 chr1 142456790 142456914 -54738518 - RSINE1 SINE B4 -31 134 11 6 1671 894 172 11 21 chr1 142457173 142457363 -54738069 + Lx4B LINE L1 6866 7053 -5 6 1671 22 70 0 0 chr1 142457950 142457993 -54737439 + AT_rich Low_complexity Low_complexity 1 43 0 6 1671 22 35 0 0 chr1 142458094 142458123 -54737309 + AT_rich Low_complexity Low_complexity 1 29 0 6 1671 363 23 0 0 chr1 142458167 142458211 -54737221 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1671 518 319 159 39 chr1 142458263 142458622 -54736810 - Lx9 LINE L1 -287 7357 6956 6 1671 2696 204 93 11 chr1 142458779 142459444 -54735988 + RMER6D LTR ERVK 1 720 0 6 1671 217 305 45 79 chr1 142459743 142459921 -54735511 - L2a LINE L2 -30 3396 3225 6 1671 1234 54 6 0 chr1 142460965 142461131 -54734301 - L1Md_A LINE L1 0 6582 6416 6 1671 1033 25 0 0 chr1 142461131 142461249 -54734183 + L1Md_T LINE L1 6064 6181 -401 6 1671 21322 76 9 2 chr1 142461780 142464329 -54731103 + L1Md_F2 LINE L1 2677 5234 -649 6 1671 444 51 0 0 chr1 142464329 142464388 -54731044 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1671 21322 76 9 2 chr1 142464388 142464726 -54730706 + L1Md_F2 LINE L1 5235 5583 -300 6 1671 7506 67 6 6 chr1 142464727 142465711 -54729721 + L1Md_F2 LINE L1 5587 6570 -12 6 1671 325 351 7 29 chr1 142466373 142466511 -54728921 - MLT1A0 LTR MaLR -225 140 6 6 1671 22 0 0 0 chr1 142466753 142466775 -54728657 + AT_rich Low_complexity Low_complexity 1 22 0 6 1671 488 177 91 0 chr1 142467255 142467455 -54727977 + Lx9 LINE L1 7392 7634 -10 6 1671 537 16 0 0 chr1 142467483 142467545 -54727887 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1671 217 326 73 10 chr1 142467554 142467650 -54727782 + RSINE1 SINE B4 39 140 -25 6 1671 542 61 0 24 chr1 142467669 142467753 -54727679 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 6 1671 246 62 0 0 chr1 142468619 142468651 -54726781 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1671 417 292 99 8 chr1 142468906 142469027 -54726405 + RSINE1 SINE B4 34 165 0 6 1671 252 86 0 0 chr1 142469037 142469072 -54726360 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1671 1138 68 0 7 chr1 142469110 142469257 -54726175 - B1_Mus1 SINE Alu -1 147 2 6 1671 36 0 0 0 chr1 142472133 142472169 -54723263 + AT_rich Low_complexity Low_complexity 1 36 0 6 1671 597 28 0 0 chr1 142472922 142472993 -54722439 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1671 230 330 39 39 chr1 142473197 142473301 -54722131 - MLT1A1 LTR MaLR -294 114 11 7 1671 183 224 54 155 chr1 142473917 142474065 -54721367 - L4 LINE RTE -282 1747 1615 7 1671 226 169 30 119 chr1 142474362 142474429 -54721003 + LTR81B LTR ERV1? 289 349 -1044 7 1672 22 35 0 0 chr1 142475545 142475574 -54719858 + AT_rich Low_complexity Low_complexity 1 29 0 7 1672 256 313 38 0 chr1 142475832 142475963 -54719469 - L1MA9 LINE L1 -181 6131 5996 7 1672 872 102 0 14 chr1 142475963 142476102 -54719330 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 7 1672 693 290 57 0 chr1 142476115 142476308 -54719124 - B3 SINE B2 -4 212 9 7 1672 185 381 56 28 chr1 142476473 142476581 -54718851 - MIR SINE MIR -151 111 1 7 1672 219 69 0 0 chr1 142477462 142477491 -54717941 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1672 7694 109 38 6 chr1 142478080 142478464 -54716968 - L1_Mur1 LINE L1 -206 5680 5273 7 1672 212 0 36 0 chr1 142478464 142478492 -54716940 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1672 7694 109 38 6 chr1 142478492 142479331 -54716101 - L1_Mur1 LINE L1 -614 5272 4419 7 1672 5084 159 6 0 chr1 142479334 142480225 -54715207 + L1_Mur2 LINE L1 3608 4503 -1374 7 1672 186 43 0 0 chr1 142480324 142480347 -54715085 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 1672 201 159 0 0 chr1 142481250 142481294 -54714138 + CT-rich Low_complexity Low_complexity 1 44 0 7 1672 1045 220 58 0 chr1 142481483 142481760 -54713672 - Lx9 LINE L1 -1 7643 7351 7 1672 31 26 0 0 chr1 142481859 142481897 -54713535 + AT_rich Low_complexity Low_complexity 1 38 0 7 1672 243 271 31 0 chr1 142482142 142482238 -54713194 + Lx9 LINE L1 7419 7517 -127 7 1672 202 244 0 0 chr1 142482419 142482464 -54712968 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1672 207 0 0 0 chr1 142484568 142484591 -54710841 + (CAA)n Simple_repeat Simple_repeat 3 25 0 7 1672 677 324 23 33 chr1 142485405 142485804 -54709628 + L1_Rod LINE L1 2713 3107 -2740 7 1672 1589 316 76 39 chr1 142485875 142486711 -54708721 - Lx8 LINE L1 -68 7405 6542 7 1672 2613 36 12 32 chr1 142486711 142487051 -54708381 + L1Md_F3 LINE L1 6252 6584 0 7 1672 1589 316 76 39 chr1 142487051 142487127 -54708305 - Lx8 LINE L1 -932 6541 6461 7 1672 1548 117 64 26 chr1 142487116 142487380 -54708052 + Lx LINE L1 5955 6228 -426 7 1672 1641 135 7 25 chr1 142487378 142487659 -54707773 + Lx LINE L1 6376 6651 -3 7 1672 923 280 29 0 chr1 142487694 142487933 -54707499 - Lx8 LINE L1 -1016 6457 6212 7 1672 1154 214 12 12 chr1 142488193 142488448 -54706984 + Lx9 LINE L1 7257 7511 -133 7 1672 231 36 0 0 chr1 142488455 142488483 -54706949 + (CAA)n Simple_repeat Simple_repeat 3 30 0 7 1672 308 206 14 0 chr1 142488490 142488563 -54706869 + Lx9 LINE L1 7563 7636 -8 7 1672 472 253 157 8 chr1 142488653 142488984 -54706448 - L1M2 LINE L1 -624 5223 4843 7 1672 486 0 0 0 chr1 142489378 142489432 -54706000 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1672 21 0 0 0 chr1 142491123 142491144 -54704288 + AT_rich Low_complexity Low_complexity 1 21 0 7 1672 241 0 0 0 chr1 142491147 142491177 -54704255 - L1_Mus3 LINE L1 -293 6345 6316 7 1672 1348 57 0 20 chr1 142491179 142491375 -54704057 + L1Md_F2 LINE L1 6391 6582 0 7 1672 192 208 17 86 chr1 142491800 142491858 -54703574 + L2 LINE L2 2761 2814 -605 7 1672 297 51 0 0 chr1 142491866 142491905 -54703527 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1672 938 100 0 0 chr1 142491906 142492036 -54703396 - B1_Mm SINE Alu -12 135 6 7 1672 495 264 6 51 chr1 142492036 142492061 -54703371 - ID_B1 SINE B4 -11 212 65 7 1672 23 0 0 0 chr1 142492205 142492228 -54703204 + AT_rich Low_complexity Low_complexity 1 23 0 7 1672 234 150 0 0 chr1 142493083 142493123 -54702309 + (TTA)n Simple_repeat Simple_repeat 1 40 0 7 1672 2552 247 27 7 chr1 142493123 142493715 -54701717 - Lx2B LINE L1 -5 6995 6392 7 1672 10071 154 59 4 chr1 142493718 142495692 -54699740 - L1_Mur1 LINE L1 -2379 3507 1426 7 1672 184 30 61 0 chr1 142495693 142495726 -54699706 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1672 974 132 7 0 chr1 142495732 142495876 -54699556 - B1_Mus2 SINE Alu -1 146 2 7 1672 2244 116 0 0 chr1 142495878 142496196 -54699236 + Lx3_Mus LINE L1 6683 7000 -9 7 1672 300 26 0 0 chr1 142496197 142496236 -54699196 + B1_Mm SINE Alu 99 137 -10 7 1672 260 27 0 26 chr1 142496236 142496274 -54699158 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1672 4046 107 24 3 chr1 142496282 142496945 -54698487 - Lx3_Mus LINE L1 -315 6694 6136 7 1672 474 49 0 0 chr1 142496945 142497006 -54698426 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1672 2119 187 15 9 chr1 142497006 142497445 -54697987 - Lx3_Mus LINE L1 -5676 1308 866 7 1672 266 200 0 0 chr1 142497725 142497765 -54697667 - Lx3_Mus LINE L1 -6236 748 709 7 1672 779 176 159 0 chr1 142497826 142498002 -54697430 - URR1A DNA MER1_type -22 204 1 7 1672 195 242 79 16 chr1 142498038 142498101 -54697331 - L2c LINE L2 -34 3353 3287 7 1672 21 0 0 0 chr1 142498157 142498178 -54697254 + AT_rich Low_complexity Low_complexity 1 21 0 7 1672 1298 263 139 52 chr1 142499051 142499553 -54695879 - RMER2 LTR ERV1 -21 546 1 7 1672 298 273 99 21 chr1 142499607 142499749 -54695683 - L1MA5 LINE L1 -317 5983 5831 7 1672 411 293 82 38 chr1 142500013 142500474 -54694958 - L1M2 LINE L1 -716 5584 5096 1 1672 21 36 0 0 chr1 142500532 142500560 -54694872 + AT_rich Low_complexity Low_complexity 1 28 0 2 1672 1999 169 18 73 chr1 142500763 142501159 -54694273 - ORR1B1 LTR MaLR 0 394 21 3 1672 313 282 155 29 chr1 142501307 142501526 -54693906 - L1M4 LINE L1 -406 5778 5518 4 1672 548 260 40 20 chr1 142501711 142501860 -54693572 - Lx8 LINE L1 -154 7319 7168 5 1672 1098 309 21 3 chr1 142501869 142502200 -54693232 - Lx8 LINE L1 -587 6886 6550 5 1672 267 304 79 42 chr1 142502319 142502535 -54692897 - L1M2 LINE L1 -1087 5056 4833 1 1672 370 336 7 21 chr1 142504782 142504922 -54690510 + B1F2 SINE Alu 9 146 -3 6 1672 1135 75 0 7 chr1 142504979 142505126 -54690306 - B1_Mus2 SINE Alu -1 146 1 7 1672 25 0 0 0 chr1 142505127 142505152 -54690280 + AT_rich Low_complexity Low_complexity 1 25 0 8 1672 524 315 99 56 chr1 142505645 142506073 -54689359 - RMER13A LTR ERVK -411 497 1 9 1672 21 0 0 0 chr1 142507227 142507248 -54688184 + AT_rich Low_complexity Low_complexity 1 21 0 1 1672 26 30 0 0 chr1 142508313 142508346 -54687086 + AT_rich Low_complexity Low_complexity 1 33 0 1 1672 31 0 0 0 chr1 142508600 142508631 -54686801 + AT_rich Low_complexity Low_complexity 1 31 0 1 1672 27 29 0 0 chr1 142510501 142510535 -54684897 + AT_rich Low_complexity Low_complexity 1 34 0 1 1672 23 33 0 0 chr1 142511289 142511319 -54684113 + AT_rich Low_complexity Low_complexity 1 30 0 1 1672 198 71 0 0 chr1 142511446 142511474 -54683958 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1672 396 0 0 0 chr1 142511848 142511892 -54683540 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1672 657 69 0 0 chr1 142512271 142512358 -54683074 + (TTC)n Simple_repeat Simple_repeat 3 89 0 1 1672 32 43 0 0 chr1 142512366 142512412 -54683020 + AT_rich Low_complexity Low_complexity 1 46 0 1 1672 2047 195 105 23 chr1 142513335 142513588 -54681844 - RLTR21 LTR ERVK 0 1572 1307 1 1672 198 0 0 0 chr1 142513588 142513610 -54681822 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1672 2047 195 105 23 chr1 142513610 142513685 -54681747 - RLTR21 LTR ERVK -266 1306 1214 1 1672 255 103 0 0 chr1 142513685 142513724 -54681708 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1672 2047 195 105 23 chr1 142513724 142513809 -54681623 - RLTR21 LTR ERVK -359 1213 1129 1 1672 351 0 0 0 chr1 142513809 142513848 -54681584 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1672 6129 183 41 44 chr1 142513848 142513988 -54681444 - RLTR21 LTR ERVK -268 1304 1058 1 1672 396 0 0 0 chr1 142513988 142514032 -54681400 + (CATA)n Simple_repeat Simple_repeat 3 46 0 2 1672 6129 182 35 45 chr1 142514032 142515221 -54680211 - RLTR21 LTR ERVK -403 1169 1 1 1672 3745 162 243 14 chr1 142515863 142516714 -54678718 + RLTR25A LTR ERVK 54 1099 -4 2 1672 1007 215 52 54 chr1 142516715 142517117 -54678315 + RMER6A LTR ERVK 365 756 0 2 1672 901 290 28 38 chr1 142517264 142517551 -54677881 - MTE2a LTR MaLR -4 375 92 2 1672 201 39 0 0 chr1 142517747 142517773 -54677659 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1672 755 177 13 13 chr1 142518448 142518679 -54676753 - L1_Mm LINE L1 -203 5680 5556 2 1672 5206 91 6 0 chr1 142518676 142519376 -54676056 + Lx LINE L1 5666 6369 -285 2 1672 755 140 0 7 chr1 142519376 142519513 -54675919 + Lx LINE L1 6518 6653 -1 3 1672 1571 152 7 7 chr1 142519518 142519797 -54675635 + Lx LINE L1 6374 6652 -2 2 1672 21 57 0 0 chr1 142519864 142519899 -54675533 + AT_rich Low_complexity Low_complexity 1 35 0 3 1672 832 301 67 56 chr1 142521744 142522085 -54673347 + MTE2a LTR MaLR 10 354 -25 3 1672 343 23 0 0 chr1 142522085 142522128 -54673304 - L1Md_F3 LINE L1 -870 5013 4971 3 1672 4434 59 0 0 chr1 142522127 142522684 -54672748 + L1Md_F3 LINE L1 5030 5586 -297 3 1672 7557 39 16 54 chr1 142522684 142523714 -54671718 + L1Md_F3 LINE L1 5587 6577 -7 3 1672 554 200 75 0 chr1 142523856 142523976 -54671456 + B1_Mur1 SINE Alu 2 130 -19 3 1672 242 115 0 82 chr1 142524004 142524018 -54671414 + A-rich Low_complexity Low_complexity 3 16 0 3 1672 483 18 0 0 chr1 142524018 142524074 -54671358 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1672 242 115 0 82 chr1 142524074 142524144 -54671288 + A-rich Low_complexity Low_complexity 17 79 0 3 1672 2341 204 88 77 chr1 142524144 142524738 -54670694 - RLTR18 LTR ERVK -15 601 2 3 1672 1200 215 98 28 chr1 142525347 142525706 -54669726 + ORR1C2 LTR MaLR 1 384 0 3 1672 342 0 0 0 chr1 142526382 142526420 -54669012 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1672 1002 313 14 10 chr1 142526587 142526884 -54668548 - Lx6 LINE L1 -30 7430 7133 4 1672 2944 258 83 23 chr1 142526887 142528167 -54667265 + Lx5 LINE L1 5501 6944 -114 4 1672 287 331 109 32 chr1 142528384 142528540 -54666892 - B4A SINE B4 -10 282 115 4 1672 386 294 109 70 chr1 142528704 142528905 -54666527 - RMER2 LTR ERV1 -28 539 331 4 1672 297 0 0 0 chr1 142529186 142529219 -54666213 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1672 347 281 31 82 chr1 142529312 142529471 -54665961 - HAL1b LINE L1 -1602 407 257 4 1672 202 318 45 0 chr1 142529882 142529948 -54665484 + L2 LINE L2 2159 2227 -1192 4 1672 5676 5 0 0 chr1 142530146 142530778 -54664654 + L1Md_A LINE L1 5951 6582 0 4 1672 238 26 0 49 chr1 142531521 142531562 -54663870 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1672 415 345 8 0 chr1 142532136 142532255 -54663177 + RSINE1 SINE B4 12 131 -34 5 1672 213 121 0 0 chr1 142532277 142532310 -54663122 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1672 1179 349 26 2 chr1 142532782 142533236 -54662196 + Lx8 LINE L1 6211 6675 -798 5 1672 2511 208 139 10 chr1 142533266 142533877 -54661555 + Lx5 LINE L1 5843 6532 -518 5 1672 1829 159 26 31 chr1 142534095 142534446 -54660986 + Lx2 LINE L1 6649 6997 0 5 1672 404 294 160 27 chr1 142535172 142535466 -54659966 + L1M2 LINE L1 2118 2450 -3693 5 1672 369 109 0 0 chr1 142535484 142535539 -54659893 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1672 4580 67 3 15 chr1 142535619 142536225 -54659207 - L1_Mus2 LINE L1 -2 6564 5966 5 1672 1749 91 0 0 chr1 142536225 142536479 -54658953 - MusHAL1 LINE L1 -2209 503 250 5 1672 434 301 62 21 chr1 142536558 142536657 -54658775 + L1M2 LINE L1 2633 2734 -3409 5 1672 1125 68 0 45 chr1 142536657 142536812 -54658620 - B1_Mus1 SINE Alu 0 148 1 5 1672 434 301 62 21 chr1 142536812 142537051 -54658381 + L1M2 LINE L1 2735 2984 -3159 5 1672 31 58 0 0 chr1 142537053 142537105 -54658327 + AT_rich Low_complexity Low_complexity 1 52 0 6 1672 221 394 12 53 chr1 142538269 142538438 -54656994 - MIR SINE MIR -93 169 8 6 1672 493 318 87 48 chr1 142538471 142538782 -54656650 - MLT1A LTR MaLR -31 343 21 6 1672 37869 30 0 0 chr1 142539386 142545633 -54649799 - L1Md_T LINE L1 0 6585 242 6 1672 775 312 36 8 chr1 142546563 142546812 -54648620 - B4A SINE B4 -35 257 2 6 1672 1033 318 50 23 chr1 142547180 142547663 -54647769 - RMER15-int LTR ERVL -3753 1246 751 6 1672 233 185 15 0 chr1 142547743 142547808 -54647624 + GA-rich Low_complexity Low_complexity 3 68 0 6 1672 519 17 0 0 chr1 142548050 142548110 -54647322 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1672 293 292 21 0 chr1 142548356 142548452 -54646980 - RMER15-int LTR ERVL -4886 113 16 6 1672 314 379 82 8 chr1 142548976 142549221 -54646211 + MLT1A0 LTR MaLR 85 347 -18 6 1672 16321 149 148 2 chr1 142549397 142552929 -54642503 + L1_Mus4 LINE L1 2035 6112 -524 6 1672 2723 47 3 0 chr1 142552929 142553270 -54642162 + IAPEY_LTR LTR ERVK 44 385 0 7 1672 3472 120 4 10 chr1 142553270 142553791 -54641641 + L1_Mus4 LINE L1 6114 6631 -5 6 1672 34 24 0 0 chr1 142554332 142554373 -54641059 + AT_rich Low_complexity Low_complexity 1 41 0 7 1672 229 338 0 0 chr1 142554517 142554585 -54640847 + LTR50 LTR ERVL 8 75 -720 7 1672 324 363 32 0 chr1 142554900 142555024 -54640408 + LTR79 LTR ERVL 264 391 -136 7 1672 23 54 0 0 chr1 142555212 142555249 -54640183 + AT_rich Low_complexity Low_complexity 1 37 0 7 1672 351 343 72 14 chr1 142555548 142555953 -54639479 + L1M3 LINE L1 3957 4380 -1760 7 1672 279 0 0 0 chr1 142555963 142555994 -54639438 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 7 1672 432 255 0 0 chr1 142556280 142556374 -54639058 + Lx9 LINE L1 7288 7381 -263 7 1672 421 132 11 46 chr1 142556383 142556470 -54638962 + B2_Mm2 SINE B2 107 190 -5 7 1672 243 321 25 0 chr1 142556556 142556637 -54638795 + B4A SINE B4 6 88 -204 7 1672 896 264 25 31 chr1 142556626 142556867 -54638565 + RLTR18B LTR ERVK 270 613 -3 8 1672 383 256 85 6 chr1 142556874 142557039 -54638393 + L1MA9 LINE L1 6125 6302 -10 8 1672 231 298 78 62 chr1 142557259 142557388 -54638044 + B3 SINE B2 86 216 0 8 1672 180 0 0 0 chr1 142558297 142558317 -54637115 + (TTATG)n Simple_repeat Simple_repeat 4 23 0 8 1672 397 252 17 42 chr1 142559540 142559660 -54635772 - MTEb LTR MaLR -2 377 261 8 1672 735 151 0 0 chr1 142559769 142559895 -54635537 + GA-rich Low_complexity Low_complexity 1 126 0 8 1672 1077 202 138 73 chr1 142559971 142560312 -54635120 + RMER13A LTR ERVK 34 396 -464 8 1672 857 200 27 11 chr1 142560588 142560775 -54634657 + Lx6 LINE L1 7271 7460 0 8 1672 986 123 80 0 chr1 142560945 142561107 -54634325 + ORR1A3 LTR MaLR 148 322 -4 8 1672 384 186 0 0 chr1 142561303 142561389 -54634043 + L1MD3 LINE L1 7773 7858 -137 8 1672 2242 214 87 5 chr1 142561409 142561995 -54633437 + Lx9 LINE L1 7008 7641 -3 9 1672 22 88 0 0 chr1 142562175 142562232 -54633200 + AT_rich Low_complexity Low_complexity 1 57 0 9 1672 880 310 63 61 chr1 142563141 142563536 -54631896 - MTD LTR MaLR -14 405 10 9 1672 405 304 49 5 chr1 142564133 142564318 -54631114 + L1VL4 LINE L1 156 348 -5954 9 1672 7303 156 49 8 chr1 142564321 142566476 -54628956 + Lx LINE L1 4409 6651 -3 9 1672 28 71 0 0 chr1 142568525 142568581 -54626851 + AT_rich Low_complexity Low_complexity 1 56 0 9 1672 429 54 0 0 chr1 142568726 142568782 -54626650 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1672 234 0 0 0 chr1 142569313 142569339 -54626093 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1672 1495 199 12 57 chr1 142569490 142569953 -54625479 - RMER17C LTR ERVK -519 439 16 9 1672 11847 172 19 28 chr1 142570374 142573168 -54622264 - L1_Mur2 LINE L1 -2238 3639 816 9 1672 1019 269 57 62 chr1 142574867 142575287 -54620145 + MTD LTR MaLR 1 418 -1 1 1672 189 107 0 0 chr1 142575501 142575529 -54619903 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1672 244 273 0 0 chr1 142575687 142575742 -54619690 - MLT1D LTR MaLR -324 181 127 1 1672 303 227 12 62 chr1 142575757 142575837 -54619595 - L1_Mur2 LINE L1 -6884 844 769 9 1672 1152 159 77 0 chr1 142575832 142576039 -54619393 + Lx2 LINE L1 6737 6959 -38 1 1672 211 373 48 0 chr1 142576447 142576573 -54618859 + L2 LINE L2 1983 2114 -1305 1 1672 27 0 0 0 chr1 142576924 142576951 -54618481 + AT_rich Low_complexity Low_complexity 1 27 0 1 1672 392 15 0 58 chr1 142577098 142577167 -54618265 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 1 1672 304 230 92 0 chr1 142577274 142577361 -54618071 - L1_Mur2 LINE L1 -419 5458 5364 1 1672 553 313 1 57 chr1 142577580 142577896 -54617536 + Lx8 LINE L1 5543 5822 -469 1 1672 3798 110 5 0 chr1 142578212 142578955 -54616477 + L1_Mus2 LINE L1 5290 6037 -529 1 1672 7555 49 0 3 chr1 142579148 142580084 -54615348 + L1Md_F2 LINE L1 5649 6581 -1 1 1672 644 271 38 42 chr1 142580232 142580444 -54614988 - Lx6 LINE L1 -873 6587 6377 1 1672 266 294 59 31 chr1 142580771 142580956 -54614476 - B3A SINE B2 -1 194 4 1 1672 298 348 46 92 chr1 142581095 142581444 -54613988 - MLT1F1 LTR MaLR -41 507 186 1 1672 228 35 0 0 chr1 142581447 142581476 -54613956 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1672 28 0 0 0 chr1 142581989 142582017 -54613415 + AT_rich Low_complexity Low_complexity 1 28 0 1 1672 544 169 11 33 chr1 142583455 142583639 -54611793 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1672 216 0 0 0 chr1 142584016 142584040 -54611392 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1672 502 324 117 71 chr1 142584115 142584467 -54610965 + LTR50 LTR ERVL 428 795 0 1 1672 27 49 0 0 chr1 142584624 142584665 -54610767 + AT_rich Low_complexity Low_complexity 1 41 0 1 1672 565 275 82 16 chr1 142584717 142584899 -54610533 + ID_B1 SINE B4 28 222 -70 1 1672 617 242 68 27 chr1 142584919 142585057 -54610375 - Lx7 LINE L1 0 7696 7556 1 1672 648 70 0 0 chr1 142585057 142585143 -54610289 + (CTATA)n Simple_repeat Simple_repeat 2 87 0 1 1672 617 242 68 27 chr1 142585143 142585225 -54610207 - Lx7 LINE L1 -141 7555 7467 1 1672 4118 80 9 7 chr1 142585224 142585769 -54609663 - L1_Mus2 LINE L1 -154 6412 5867 1 1672 1050 171 0 25 chr1 142585819 142586017 -54609415 + B2_Mm2 SINE B2 1 193 -2 1 1672 2065 238 66 13 chr1 142586022 142586567 -54608865 - Lx7 LINE L1 -444 7252 6679 1 1672 325 219 16 0 chr1 142586562 142586626 -54608806 + L1_Mur3 LINE L1 52 116 -7596 1 1672 1053 292 98 31 chr1 142587437 142587534 -54607898 + Lx9 LINE L1 6960 7067 -577 1 1672 324 0 0 0 chr1 142587534 142587570 -54607862 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1672 1053 292 98 31 chr1 142587570 142588112 -54607320 + Lx9 LINE L1 7068 7641 -3 1 1672 23 33 0 0 chr1 142588112 142588142 -54607290 + AT_rich Low_complexity Low_complexity 1 30 0 1 1672 274 257 46 28 chr1 142588189 142588297 -54607135 - L1MC4 LINE L1 -23 8019 7910 1 1672 338 139 14 0 chr1 142588343 142588415 -54607017 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1672 255 31 0 0 chr1 142588969 142589001 -54606431 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1672 26 82 0 0 chr1 142589053 142589114 -54606318 + AT_rich Low_complexity Low_complexity 1 61 0 1 1672 193 75 0 48 chr1 142589193 142589235 -54606197 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1672 1183 55 14 0 chr1 142589235 142589381 -54606051 - B1_Mus1 SINE Alu 0 148 1 1 1672 5760 179 98 28 chr1 142590151 142592072 -54603360 + L1Md_F LINE L1 476 2581 -3305 1 1672 8146 45 2 0 chr1 142592072 142593065 -54602367 + L1Md_F2 LINE L1 5587 6581 -1 1 1672 5760 243 135 45 chr1 142593065 142594777 -54600655 + L1Md_F LINE L1 2582 4401 -1485 1 1672 7827 49 0 0 chr1 142594776 142595727 -54599705 - L1Md_F2 LINE L1 -12 6570 5620 1 1672 1904 169 35 0 chr1 142595727 142596094 -54599338 + L1Md_F LINE L1 4379 4758 -1119 1 1672 6770 125 14 13 chr1 142596101 142597441 -54597991 + L1_Mus4 LINE L1 5289 6631 -5 1 1672 464 327 59 13 chr1 142598165 142598317 -54597115 - B3 SINE B2 -56 160 2 1 1672 4836 62 0 5 chr1 142598465 142599086 -54596346 - L1Md_F2 LINE L1 -1 6581 5964 1 1672 227 189 0 19 chr1 142599477 142599531 -54595901 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 1 1672 522 31 0 0 chr1 142599547 142599611 -54595821 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1672 1338 83 0 27 chr1 142600058 142600244 -54595188 + B2_Mm2 SINE B2 1 181 -14 1 1672 748 185 6 6 chr1 142600377 142600540 -54594892 + CT-rich Low_complexity Low_complexity 4 166 0 1 1672 914 56 104 0 chr1 142600558 142600683 -54594749 - B1_Mus1 SINE Alu -6 142 5 1 1672 366 23 0 0 chr1 142601533 142601576 -54593856 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1672 221 111 44 0 chr1 142601628 142601673 -54593759 + (TATG)n Simple_repeat Simple_repeat 1 47 0 1 1672 527 0 0 16 chr1 142601673 142601737 -54593695 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 1672 21 0 0 0 chr1 142601850 142601871 -54593561 + AT_rich Low_complexity Low_complexity 1 21 0 1 1672 23 33 0 0 chr1 142602384 142602414 -54593018 + AT_rich Low_complexity Low_complexity 1 30 0 1 1672 7994 52 2 3 chr1 142602415 142603410 -54592022 - L1Md_F2 LINE L1 -1 6581 5588 1 1672 7515 56 0 0 chr1 142603408 142604342 -54591090 + L1Md_F2 LINE L1 4657 5590 -293 1 1672 326 330 80 27 chr1 142604380 142604689 -54590743 - L1MEb LINE L1 -5158 1475 1153 1 1672 22 35 0 0 chr1 142606134 142606163 -54589269 + AT_rich Low_complexity Low_complexity 1 29 0 1 1673 10004 5 1 0 chr1 142606432 142607562 -54587870 + L1Md_A LINE L1 214 1344 -5380 1 1673 10129 5 0 0 chr1 142610666 142611804 -54583628 + L1Md_A LINE L1 4449 5586 -297 1 1673 8997 4 0 0 chr1 142611804 142612800 -54582632 + L1Md_A LINE L1 5587 6582 0 1 1673 198 71 0 0 chr1 142612820 142612848 -54582584 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1673 516 16 0 0 chr1 142613298 142613359 -54582073 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1673 243 0 0 0 chr1 142613359 142613385 -54582047 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1673 204 194 14 56 chr1 142613503 142613574 -54581858 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 1 1673 621 322 85 41 chr1 142613658 142614150 -54581282 + L1_Mur3 LINE L1 5277 5790 -90 1 1673 306 0 0 0 chr1 142614489 142614523 -54580909 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1 1673 601 100 273 0 chr1 142614523 142614633 -54580799 - B1_Mus1 SINE Alu -8 140 1 1 1673 2370 85 3 43 chr1 142614650 142615019 -54580413 - L1Md_F2 LINE L1 0 6582 6229 1 1673 413 232 0 7 chr1 142615100 142615243 -54580189 + CT-rich Low_complexity Low_complexity 3 144 0 1 1673 285 352 33 11 chr1 142615245 142615337 -54580095 - B3A SINE B2 -104 94 1 1 1673 1694 242 14 14 chr1 142615903 142616268 -54579164 - Lx6 LINE L1 -183 7277 6913 1 1673 26 64 0 0 chr1 142616344 142616391 -54579041 + AT_rich Low_complexity Low_complexity 1 47 0 1 1673 23 0 0 0 chr1 142616461 142616484 -54578948 + AT_rich Low_complexity Low_complexity 1 23 0 1 1673 3649 20 121 0 chr1 142617439 142617879 -54577553 + MT2_Mm LTR ERVL 1 493 0 1 1673 1998 79 25 0 chr1 142618493 142618771 -54576661 - L1_Mus1 LINE L1 -444 6123 5839 1 1673 2404 47 7 0 chr1 142618771 142619072 -54576360 + L1_Mus1 LINE L1 6258 6560 -7 1 1673 34659 73 20 7 chr1 142619149 142624498 -54570934 + L1Md_F3 LINE L1 223 5589 -297 1 1673 7572 55 16 4 chr1 142624498 142624708 -54570724 + L1Md_F3 LINE L1 5590 5800 -787 1 1673 1485 38 27 0 chr1 142624708 142624892 -54570540 + B2_Mm1t SINE B2 2 190 -3 1 1673 7572 55 16 4 chr1 142624892 142625666 -54569766 + L1Md_F3 LINE L1 5801 6586 -1 1 1673 180 0 0 0 chr1 142625777 142625797 -54569635 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1673 316 203 0 0 chr1 142625969 142626028 -54569404 + L1_Mur2 LINE L1 363 421 -6291 1 1673 839 86 51 0 chr1 142626024 142626141 -54569291 + Lx4A LINE L1 6501 6623 -435 1 1673 1644 182 30 39 chr1 142626141 142626479 -54568953 + Lx4A LINE L1 6724 7058 0 1 1673 726 44 0 0 chr1 142626669 142626759 -54568673 + (TTC)n Simple_repeat Simple_repeat 2 91 0 1 1673 583 110 0 0 chr1 142626759 142626841 -54568591 - B1_Mus2 SINE Alu -2 145 64 1 1673 180 0 0 0 chr1 142627070 142627090 -54568342 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1673 201 182 18 35 chr1 142627417 142627474 -54567958 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1 1673 7364 182 8 16 chr1 142627789 142629133 -54566299 - Lx4A LINE L1 -2 7056 5724 1 1673 247 152 0 42 chr1 142629116 142629164 -54566268 + Lx5 LINE L1 5676 5721 -1329 1 1673 46 78 0 0 chr1 142629589 142629691 -54565741 + AT_rich Low_complexity Low_complexity 1 102 0 1 1673 602 224 53 112 chr1 142630690 142630896 -54564536 - B3A SINE B2 0 198 5 1 1673 21 36 0 0 chr1 142630908 142630936 -54564496 + AT_rich Low_complexity Low_complexity 1 28 0 1 1673 2061 137 3 3 chr1 142630975 142631290 -54564142 - ORR1A2 LTR MaLR -12 315 1 1 1673 5777 161 30 14 chr1 142631290 142632542 -54562890 - ORR1A2-int LTR MaLR 0 1963 29 1 1673 1953 161 93 3 chr1 142632542 142632927 -54562505 + BGLII_Mus LTR ERVK 1 420 -2 1 1673 3911 188 89 26 chr1 142632927 142632956 -54562476 - ORR1A2-int LTR MaLR -1230 28 1 1 1673 1174 61 0 13 chr1 142633056 142633205 -54562227 - B1_Mus2 SINE Alu 0 147 1 1 1673 1874 126 3 7 chr1 142633206 142633493 -54561939 - ORR1A2 LTR MaLR -41 286 1 1 1673 285 362 100 96 chr1 142634325 142634725 -54560707 - MLT2B3 LTR ERVL -1 553 2 1 1673 359 274 27 100 chr1 142634725 142634875 -54560557 - MTEb LTR MaLR -239 140 2 1 1673 492 48 0 0 chr1 142634920 142634983 -54560449 + (CAA)n Simple_repeat Simple_repeat 1 63 0 1 1673 23 54 0 0 chr1 142635372 142635409 -54560023 + AT_rich Low_complexity Low_complexity 1 37 0 1 1673 369 0 0 0 chr1 142636310 142636351 -54559081 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 1 1673 183 213 20 78 chr1 142636510 142636561 -54558871 + L2a LINE L2 3363 3410 -16 1 1673 8694 119 44 4 chr1 142636752 142638086 -54557346 + Lx3A LINE L1 5587 6974 -7 1 1673 21 36 0 0 chr1 142638087 142638115 -54557317 + AT_rich Low_complexity Low_complexity 1 28 0 1 1673 267 336 46 9 chr1 142638127 142638235 -54557197 - MLT1A1 LTR MaLR -273 135 24 1 1673 1712 214 56 27 chr1 142638348 142638757 -54556675 + MTC LTR MaLR 1 421 0 1 1673 2208 230 66 24 chr1 142638988 142639581 -54555851 + Lx2B LINE L1 6346 6996 -4 1 1673 384 329 35 7 chr1 142639658 142639799 -54555633 - RSINE1 SINE B4 -19 146 2 1 1673 777 193 204 0 chr1 142640037 142640213 -54555219 - B3 SINE B2 0 216 5 1 1673 345 123 0 0 chr1 142640222 142640287 -54555145 + (T)n Simple_repeat Simple_repeat 1 65 0 2 1673 1314 272 9 14 chr1 142640288 142640638 -54554794 - Lx6 LINE L1 -683 6777 6430 2 1673 1139 68 7 0 chr1 142641033 142641179 -54554253 + B1_Mm SINE Alu 1 147 0 2 1673 2818 123 38 23 chr1 142641511 142641984 -54553448 + Lx LINE L1 6165 6644 -10 2 1673 22 56 0 0 chr1 142642734 142642770 -54552662 + AT_rich Low_complexity Low_complexity 1 36 0 2 1673 285 224 17 0 chr1 142643401 142643459 -54551973 - RMER4B LTR ERVK -184 401 343 2 1673 221 108 227 14 chr1 142643571 142643712 -54551720 + (CAATC)n Simple_repeat Simple_repeat 1 171 0 2 1673 241 120 239 0 chr1 142643738 142643880 -54551552 + (CAATC)n Simple_repeat Simple_repeat 1 176 0 2 1673 684 189 98 127 chr1 142643973 142644209 -54551223 - RMER4B LTR ERVK -340 245 17 2 1673 422 326 66 61 chr1 142645739 142646551 -54548881 + L1_Mur3 LINE L1 1434 2246 -3634 2 1673 1128 58 0 0 chr1 142646551 142646689 -54548743 - B1_Mus1 SINE Alu -9 139 2 2 1673 422 262 119 10 chr1 142646689 142646837 -54548595 + L1_Mur3 LINE L1 2247 2400 -3486 2 1673 1728 146 3 3 chr1 142647139 142647427 -54548005 + Lx LINE L1 6367 6654 0 2 1673 407 321 65 20 chr1 142647436 142647684 -54547748 + L1M3 LINE L1 4039 4297 -1843 2 1673 1410 296 105 24 chr1 142647697 142648376 -54547056 + Lx8 LINE L1 6710 7443 -30 2 1673 21 0 0 0 chr1 142648396 142648417 -54547015 + AT_rich Low_complexity Low_complexity 1 21 0 2 1673 21 36 0 0 chr1 142648946 142648974 -54546458 + AT_rich Low_complexity Low_complexity 1 28 0 2 1673 342 0 0 0 chr1 142650612 142650650 -54544782 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1673 6127 136 5 14 chr1 142651094 142652060 -54543372 + RMER17B LTR ERVK 1 958 0 2 1673 206 57 0 54 chr1 142652377 142652414 -54543018 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 1673 189 0 0 0 chr1 142652923 142652944 -54542488 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1673 997 190 209 3 chr1 142653703 142653999 -54541433 - Lx9 LINE L1 -8 7636 7280 2 1673 1129 268 79 12 chr1 142654089 142654429 -54541003 + ORR1D1 LTR MaLR 1 363 -11 2 1673 223 325 93 68 chr1 142654884 142654899 -54540533 - MIRb SINE MIR -65 203 195 2 1673 244 94 38 0 chr1 142654899 142654952 -54540480 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1673 286 323 75 37 chr1 142654952 142655098 -54540334 - MIR SINE MIR -74 194 32 2 1673 313 26 0 0 chr1 142656717 142656755 -54538677 - L1Md_F3 LINE L1 -524 6060 6023 2 1673 1259 53 0 6 chr1 142656756 142656927 -54538505 + L1Md_F3 LINE L1 6415 6584 0 2 1673 183 100 0 0 chr1 142658318 142658348 -54537084 + (TAAAAA)n Simple_repeat Simple_repeat 6 35 0 2 1673 23 68 0 0 chr1 142658617 142658661 -54536771 + AT_rich Low_complexity Low_complexity 1 44 0 2 1673 923 269 14 59 chr1 142658973 142659261 -54536171 - Lx6 LINE L1 0 7460 7186 2 1673 2210 18 4 0 chr1 142659252 142659513 -54535919 + L1_Mm LINE L1 5328 5589 -297 2 1673 8424 31 1 0 chr1 142659513 142660508 -54534924 + L1Md_T LINE L1 5587 6582 0 2 1673 1758 127 7 11 chr1 142660508 142660532 -54534900 + L1_Mm LINE L1 5590 5610 -276 2 1673 259 265 24 12 chr1 142660509 142660593 -54534839 - Lx5 LINE L1 -241 6809 6725 2 1673 390 42 0 0 chr1 142660593 142660641 -54534791 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1673 25 31 0 0 chr1 142660690 142660722 -54534710 + AT_rich Low_complexity Low_complexity 1 32 0 2 1673 231 36 0 0 chr1 142660827 142660855 -54534577 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2 1673 34 42 0 0 chr1 142660882 142660930 -54534502 + AT_rich Low_complexity Low_complexity 1 48 0 2 1673 439 323 40 55 chr1 142661862 142662062 -54533370 - B3A SINE B2 -1 197 1 2 1673 393 22 0 0 chr1 142662814 142662860 -54532572 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2 1673 4568 215 42 15 chr1 142662861 142663851 -54531581 - Lx4B LINE L1 -21 7037 6021 2 1673 874 145 0 13 chr1 142663849 142664003 -54531429 + L1_Mur2 LINE L1 4882 5033 -844 2 1673 401 316 28 4 chr1 142664028 142664149 -54531283 - MTE2b LTR MaLR -252 127 8 2 1673 183 129 0 0 chr1 142664300 142664331 -54531101 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1673 5697 81 38 0 chr1 142664386 142665174 -54530258 - L1_Mus3 LINE L1 -6 6632 5815 2 1673 203 184 0 0 chr1 142665753 142665791 -54529641 + T-rich Low_complexity Low_complexity 1 38 0 2 1673 336 224 319 11 chr1 142666726 142666835 -54528597 - Lx9 LINE L1 0 7644 7479 2 1673 450 36 0 0 chr1 142666835 142666891 -54528541 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1673 336 224 319 11 chr1 142666891 142666966 -54528466 - Lx9 LINE L1 -166 7478 7404 2 1673 551 343 36 29 chr1 142667204 142667480 -54527952 - RLTR18B LTR ERVK -1 511 234 2 1673 5099 58 0 7 chr1 142667681 142668361 -54527071 + L1Md_F3 LINE L1 4912 5586 -297 2 1673 8190 36 7 1 chr1 142668361 142669353 -54526079 + L1Md_F3 LINE L1 5587 6584 0 2 1673 426 307 54 38 chr1 142669368 142669554 -54525878 - RLTR18B LTR ERVK -423 193 5 2 1673 591 259 82 29 chr1 142670631 142670838 -54524594 + RLTR45 LTR ERVK 265 482 0 2 1673 204 125 0 0 chr1 142670839 142670871 -54524561 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1673 382 276 167 33 chr1 142670871 142671021 -54524411 - B3 SINE B2 0 216 47 2 1673 21 36 0 0 chr1 142671099 142671127 -54524305 + AT_rich Low_complexity Low_complexity 1 28 0 2 1673 219 36 0 0 chr1 142672417 142672445 -54522987 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1673 1125 205 5 0 chr1 142672719 142672943 -54522489 - URR1A DNA MER1_type -1 225 1 2 1673 203 138 0 0 chr1 142673133 142673162 -54522270 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 2 1673 265 0 75 0 chr1 142673351 142673391 -54522041 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1673 831 119 119 0 chr1 142673394 142673520 -54521912 - B1_Mus2 SINE Alu -6 141 1 2 1673 3339 118 112 148 chr1 142673996 142674408 -54521024 - L1_Mus3 LINE L1 0 6638 6176 2 1673 710 144 39 16 chr1 142674408 142674535 -54520897 + B1_Mm SINE Alu 2 131 -16 2 1673 3339 118 112 148 chr1 142674535 142674879 -54520553 - L1_Mus3 LINE L1 0 6175 5788 2 1673 215 322 22 54 chr1 142676023 142676115 -54519317 + PB1D10 SINE Alu 29 117 0 2 1673 501 276 137 45 chr1 142676321 142676494 -54518938 + Lx8 LINE L1 6351 6533 -940 2 1673 342 0 0 0 chr1 142676494 142676532 -54518900 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1673 501 276 137 45 chr1 142676532 142676650 -54518782 + Lx8 LINE L1 6534 6669 -804 2 1673 1187 152 13 17 chr1 142676662 142676896 -54518536 - Lx2 LINE L1 0 6997 6765 2 1673 4670 157 22 35 chr1 142676896 142677792 -54517640 - Lx2 LINE L1 -363 6634 5750 2 1673 2437 161 2 22 chr1 142677791 142678249 -54517183 + Lx2 LINE L1 5316 5764 -119 2 1673 2469 153 38 0 chr1 142678336 142678780 -54516652 - Lx2A LINE L1 -14 6994 6534 2 1673 329 314 37 30 chr1 142678907 142679071 -54516361 + Lx7 LINE L1 6739 6903 -793 2 1673 4853 133 67 13 chr1 142679071 142679203 -54516229 + L1_Mus3 LINE L1 5663 5797 -841 2 1673 1134 62 14 0 chr1 142679203 142679348 -54516084 + B1_Mm SINE Alu 1 147 0 2 1673 4853 133 67 13 chr1 142679348 142680139 -54515293 + L1_Mus3 LINE L1 5798 6636 -2 2 1673 234 0 0 0 chr1 142680180 142680206 -54515226 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1673 362 385 15 0 chr1 142682063 142682198 -54513234 - RSINE1 SINE B4 -19 146 10 2 1673 234 0 0 0 chr1 142682215 142682241 -54513191 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1673 1128 76 7 0 chr1 142682244 142682389 -54513043 - B1_Mm SINE Alu -1 146 1 2 1673 229 373 20 34 chr1 142682641 142682788 -54512644 - B3 SINE B2 -68 148 4 2 1673 7165 159 52 4 chr1 142684519 142685984 -54509448 + Lx2 LINE L1 5460 6990 -7 2 1673 27 62 0 0 chr1 142686864 142686912 -54508520 + AT_rich Low_complexity Low_complexity 1 48 0 2 1673 1709 219 61 76 chr1 142687468 142687993 -54507439 + RLTR31A_Mm LTR ERVK 5 521 -63 2 1673 227 230 89 33 chr1 142688008 142688098 -54507334 + Looper DNA PiggyBac 514 608 -950 2 1673 290 275 163 47 chr1 142688956 142689189 -54506243 - RMER20B LTR ERVK -228 399 140 2 1673 3773 227 70 24 chr1 142689418 142689514 -54505918 + Lx2B LINE L1 5849 5944 -1056 2 1673 3117 129 34 4 chr1 142689514 142690010 -54505422 + Lx2 LINE L1 6487 6997 0 2 1673 3773 227 70 24 chr1 142690010 142691001 -54504431 + Lx2B LINE L1 5945 6986 -14 2 1673 2184 49 7 0 chr1 142691002 142691289 -54504143 - RLTR10-int LTR ERVK -1686 301 13 2 1673 2906 28 2 130 chr1 142691336 142691783 -54503649 - RLTR10 LTR ERVK 0 390 1 2 1673 8408 18 0 0 chr1 142691785 142692780 -54502652 - RLTR10-int LTR ERVK -3 1984 990 2 1673 323 271 31 8 chr1 142692862 142692992 -54502440 - RLTR10-int LTR ERVK -5987 1594 1462 2 1673 7176 45 11 49 chr1 142693056 142694081 -54501351 - RLTR10-int LTR ERVK -989 998 13 2 1673 2906 28 2 130 chr1 142694128 142694575 -54500857 - RLTR10 LTR ERVK 0 390 1 2 1673 638 281 119 34 chr1 142695668 142695960 -54499472 + RLTR40 LTR ERVK 55 371 -446 2 1673 2208 207 95 129 chr1 142695960 142696625 -54498807 + RLTR26 LTR ERVK 1 642 0 2 1673 6964 119 10 76 chr1 142696795 142698126 -54497306 - Lx3A LINE L1 -3 6978 5736 2 1673 355 274 41 33 chr1 142698237 142698358 -54497074 + RLTR40 LTR ERVK 649 770 -47 2 1673 246 372 26 39 chr1 142698359 142698513 -54496919 - ORR1D1 LTR MaLR -219 155 4 2 1673 751 271 119 45 chr1 142698513 142698802 -54496630 - MTE-int LTR MaLR -60 1520 1226 2 1673 764 323 92 39 chr1 142699235 142699555 -54495877 - MTE-int LTR MaLR -352 1228 891 2 1673 2172 153 44 15 chr1 142699555 142699966 -54495466 + Lx LINE L1 6225 6647 -7 2 1673 764 323 92 39 chr1 142699966 142699983 -54495449 - MTE-int LTR MaLR -690 890 874 2 1673 263 274 26 0 chr1 142699983 142700096 -54495336 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1673 714 225 142 47 chr1 142700998 142701273 -54494159 - RCHARR1 DNA MER1_type -294 680 380 2 1673 798 255 47 28 chr1 142701277 142701523 -54493909 - Lx4B LINE L1 -75 6983 6648 2 1673 3424 38 0 0 chr1 142701523 142701919 -54493513 + MTA_Mm LTR MaLR 1 396 0 2 1673 798 236 68 17 chr1 142701919 142702047 -54493385 - Lx4B LINE L1 -409 6649 6521 2 1673 222 37 0 0 chr1 142702271 142702298 -54493134 + (TTAG)n Simple_repeat Simple_repeat 3 29 0 2 1673 2045 222 12 23 chr1 142702298 142702771 -54492661 - Lx5 LINE L1 -7 7043 6575 2 1673 354 45 0 0 chr1 142703289 142703333 -54492099 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1673 327 78 0 0 chr1 142703501 142703552 -54491880 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 2 1673 639 273 27 68 chr1 142703568 142703788 -54491644 + B3 SINE B2 6 216 0 2 1673 239 300 0 0 chr1 142704031 142704091 -54491341 - MER103 DNA DNA -102 64 5 2 1673 368 226 0 0 chr1 142704626 142704710 -54490722 - Lx2B LINE L1 -700 6300 6217 2 1673 276 344 41 10 chr1 142705491 142705588 -54489844 - PB1D10 SINE Alu -7 110 11 2 1673 231 144 71 9 chr1 142706014 142706126 -54489306 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 1673 5383 136 50 20 chr1 142706213 142707143 -54488289 + RMER17B LTR ERVK 1 958 0 3 1673 28 61 0 0 chr1 142707163 142707212 -54488220 + AT_rich Low_complexity Low_complexity 1 49 0 3 1673 920 309 22 97 chr1 142707661 142708063 -54487369 + MTEa LTR MaLR 3 374 -5 3 1673 6026 240 73 33 chr1 142708258 142710786 -54484646 - Lx7 LINE L1 0 7696 5069 3 1673 189 0 0 0 chr1 142711502 142711523 -54483909 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1673 585 0 0 0 chr1 142712520 142712585 -54482847 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1673 354 350 0 20 chr1 142712607 142712709 -54482723 - RSINE1 SINE B4 -62 103 4 3 1673 3049 3 5 90 chr1 142713337 142713738 -54481694 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1673 52375 22 20 9 chr1 142713738 142720145 -54475287 + IAPEz-int LTR ERVK 8 6481 0 3 1673 3049 3 5 90 chr1 142720145 142720546 -54474886 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1673 786 306 119 26 chr1 142720654 142721083 -54474349 + Lx8 LINE L1 6249 6717 -756 3 1673 499 309 74 117 chr1 142721104 142721395 -54474037 + RLTR23 LTR ERV1 6 278 -152 3 1673 3234 48 20 0 chr1 142721395 142721795 -54473637 + L1Md_T LINE L1 6174 6581 -1 3 1673 499 309 74 117 chr1 142721795 142721918 -54473514 + RLTR23 LTR ERV1 279 407 -23 3 1673 3830 209 43 30 chr1 142721918 142722814 -54472618 + RMER13B LTR ERVK 1 908 0 3 1673 292 316 61 90 chr1 142722814 142722842 -54472590 + RLTR23 LTR ERV1 408 429 -1 3 1673 563 233 93 21 chr1 142722845 142723038 -54472394 + Lx8 LINE L1 6720 6926 -547 3 1673 824 267 0 130 chr1 142723120 142723542 -54471890 - L1_Mur3 LINE L1 -762 5118 4752 3 1673 21 36 0 0 chr1 142723790 142723818 -54471614 + AT_rich Low_complexity Low_complexity 1 28 0 3 1673 2570 134 32 14 chr1 142723897 142724334 -54471098 + Lx2 LINE L1 6553 6997 0 3 1673 419 344 24 43 chr1 142724402 142724566 -54470866 + B4A SINE B4 128 288 -4 3 1673 23 33 0 0 chr1 142726191 142726221 -54469211 + AT_rich Low_complexity Low_complexity 1 30 0 3 1673 7217 109 26 1 chr1 142726454 142727803 -54467629 - L1_Mus4 LINE L1 -6 6630 5253 3 1673 2478 196 60 59 chr1 142727824 142728487 -54466945 + RMER6C LTR ERVK 1 664 -26 3 1673 1670 152 46 61 chr1 142729214 142729543 -54465889 - ORR1A3 LTR MaLR 0 326 3 3 1673 3158 72 6 57 chr1 142730157 142730630 -54464802 + L1Md_F2 LINE L1 6133 6581 -1 3 1673 1168 75 0 0 chr1 142730641 142730788 -54464644 + B1_Mm SINE Alu 1 147 0 3 1673 227 115 0 37 chr1 142730789 142730843 -54464589 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 1673 239 0 32 0 chr1 142730837 142730868 -54464564 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1673 218 316 37 62 chr1 142731275 142731356 -54464076 + B1F1 SINE Alu 8 86 -63 3 1673 1721 195 26 14 chr1 142731790 142732134 -54463298 - ORR1B1 LTR MaLR 0 394 47 3 1673 1755 270 0 26 chr1 142732193 142732441 -54462991 + RMER1B Other Other 238 545 -521 3 1673 2856 76 42 5 chr1 142732441 142732823 -54462609 + MTA_Mm LTR MaLR 1 396 0 3 1673 8945 46 1 0 chr1 142732823 142733920 -54461512 + MTA_Mm-int LTR MaLR 1 1098 0 3 1673 3060 54 21 0 chr1 142733920 142734308 -54461124 + MTA_Mm LTR MaLR 1 396 0 3 1673 1755 256 0 26 chr1 142734308 142734489 -54460943 + RMER1B Other Other 546 719 -347 3 1673 409 250 5 167 chr1 142734483 142734675 -54460757 + RMER1B Other Other 837 1034 -32 3 1673 2846 107 7 5 chr1 142734675 142735098 -54460334 + L1_Mus3 LINE L1 6209 6632 -6 3 1673 369 346 26 120 chr1 142736802 142737094 -54458338 + MTE2b LTR MaLR 10 274 -105 3 1673 292 302 183 8 chr1 142737080 142737200 -54458232 - ID_B1 SINE B4 -72 152 12 3 1673 235 178 30 61 chr1 142737339 142737405 -54458027 - MER72B LTR ERV1 -480 288 225 3 1674 264 326 133 0 chr1 142738466 142738564 -54456868 + RSINE1 SINE B4 3 113 -52 3 1674 485 190 17 22 chr1 142738612 142738790 -54456642 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 1674 221 83 28 0 chr1 142738828 142738864 -54456568 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 3 1674 408 181 0 0 chr1 142739472 142739555 -54455877 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1674 3450 182 48 13 chr1 142739704 142740553 -54454879 + Lx3C LINE L1 5990 7058 0 3 1674 539 66 0 13 chr1 142740553 142740630 -54454802 + (GAAAA)n Simple_repeat Simple_repeat 3 78 0 3 1674 1587 276 75 26 chr1 142740676 142741361 -54454071 - Lx9 LINE L1 -21 7623 6906 3 1674 1099 291 165 23 chr1 142741417 142742154 -54453278 - Lx9 LINE L1 -885 6759 5809 3 1674 25 90 0 0 chr1 142742386 142742453 -54452979 + AT_rich Low_complexity Low_complexity 1 67 0 3 1674 408 97 0 0 chr1 142742888 142742950 -54452482 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1674 276 77 0 0 chr1 142742950 142742989 -54452443 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1674 343 289 142 47 chr1 142743036 142743163 -54452269 - RSINE1 SINE B4 -24 141 3 3 1674 5811 116 94 1 chr1 142744317 142745465 -54449967 + Lx LINE L1 5374 6626 -28 3 1674 197 0 0 67 chr1 142745465 142745495 -54449937 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1674 380 236 37 52 chr1 142745495 142745621 -54449811 - L1MC LINE L1 -1837 4309 4186 3 1674 180 0 0 0 chr1 142745665 142745685 -54449747 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1674 21 0 0 0 chr1 142746365 142746386 -54449046 + AT_rich Low_complexity Low_complexity 1 21 0 3 1674 3360 70 2 0 chr1 142746386 142746815 -54448617 - L1_Mus1 LINE L1 0 6567 6138 3 1674 260 264 139 31 chr1 142747766 142747895 -54447537 + MER76-int LTR ERVL 3398 3540 -2649 3 1674 526 287 65 25 chr1 142748267 142748467 -54446965 - B3 SINE B2 -4 212 5 3 1674 2277 67 0 6 chr1 142749283 142749600 -54445832 + L1Md_F3 LINE L1 6270 6584 0 3 1674 25 0 0 0 chr1 142749811 142749836 -54445596 + AT_rich Low_complexity Low_complexity 1 25 0 3 1674 1278 151 4 4 chr1 142750335 142750561 -54444871 - Lx4A LINE L1 -1125 5933 5708 3 1674 279 0 0 0 chr1 142750591 142750622 -54444810 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1674 324 132 57 0 chr1 142750647 142750700 -54444732 - Lx4A LINE L1 -262 5615 5560 3 1674 7721 65 3 3 chr1 142750708 142752063 -54443369 - L1Md_F2 LINE L1 -14 6568 5213 3 1674 3602 74 5 23 chr1 142752699 142753259 -54442173 - L1_Mus3 LINE L1 -567 6071 5520 3 1674 3781 118 4 7 chr1 142753259 142753822 -54441610 + L1_Mus3 LINE L1 6076 6636 -2 3 1674 297 75 0 0 chr1 142754715 142754755 -54440677 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1674 25 0 0 0 chr1 142755055 142755080 -54440352 + AT_rich Low_complexity Low_complexity 1 25 0 3 1674 6947 105 19 6 chr1 142756258 142757284 -54438148 + Lx LINE L1 5615 6653 -1 3 1674 24 0 0 0 chr1 142757284 142757308 -54438124 + AT_rich Low_complexity Low_complexity 1 24 0 3 1674 1058 68 0 13 chr1 142758140 142758289 -54437143 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 3 1674 1031 93 0 41 chr1 142758294 142758440 -54436992 - B1_Mus2 SINE Alu -7 140 1 3 1674 299 339 72 32 chr1 142759066 142759191 -54436241 - B1F SINE Alu -1 148 19 3 1674 1036 350 47 27 chr1 142759629 142760287 -54435145 - Lx8 LINE L1 -102 7371 6701 3 1674 6987 136 29 10 chr1 142760290 142762219 -54433213 + L1_Mus4 LINE L1 4673 6631 -5 3 1674 358 322 32 83 chr1 142762569 142762786 -54432646 + B3 SINE B2 1 206 -10 3 1674 3093 264 62 46 chr1 142762837 142763862 -54431570 + Lx6 LINE L1 6283 7324 -136 3 1674 3632 57 0 0 chr1 142763879 142764337 -54431095 - L1Md_F2 LINE L1 0 6582 6125 3 1674 24558 73 6 2 chr1 142764337 142767733 -54427699 - L1Md_F2 LINE L1 -650 5932 2527 3 1674 2241 208 95 17 chr1 142767733 142768180 -54427252 - L1_Mur2 LINE L1 -305 5581 5055 3 1674 285 51 0 0 chr1 142768180 142768219 -54427213 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1674 2241 198 79 18 chr1 142768219 142768408 -54427024 - L1_Mur2 LINE L1 -823 5054 4858 3 1674 542 228 89 7 chr1 142768414 142768560 -54426872 + Lx4B LINE L1 6901 7058 0 3 1674 1025 311 53 64 chr1 142769256 142769820 -54425612 + RLTR40 LTR ERVK 19 576 -241 3 1674 652 314 45 30 chr1 142771834 142772238 -54423194 - RMER15 LTR ERVL -18 557 25 3 1674 24 32 0 0 chr1 142773569 142773600 -54421832 + AT_rich Low_complexity Low_complexity 1 31 0 3 1674 24 53 0 0 chr1 142773619 142773657 -54421775 + AT_rich Low_complexity Low_complexity 1 38 0 3 1674 438 245 9 0 chr1 142773813 142773919 -54421513 - Lx6 LINE L1 -43 7417 7311 3 1674 12372 103 6 16 chr1 142773921 142776466 -54418966 + L1Md_A LINE L1 217 2947 -2936 3 1674 207 189 0 0 chr1 142776796 142776833 -54418599 + T-rich Low_complexity Low_complexity 5 41 0 3 1674 360 0 0 0 chr1 142776999 142777039 -54418393 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1674 495 273 97 78 chr1 142777196 142777557 -54417875 + RLTR9A LTR ERVK 1 368 0 3 1674 273 29 0 0 chr1 142777722 142777756 -54417676 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 1674 730 344 35 8 chr1 142777941 142778199 -54417233 - MTE2b LTR MaLR -15 364 100 3 1674 468 219 71 83 chr1 142778199 142778218 -54417214 + L1_Mur3 LINE L1 3400 3418 -2462 3 1674 1379 65 32 0 chr1 142778218 142778404 -54417028 - L1Md_F2 LINE L1 -2 6580 6389 3 1674 468 219 71 83 chr1 142778404 142778553 -54416879 + L1_Mur3 LINE L1 3419 3565 -2315 3 1674 680 218 0 26 chr1 142778546 142778697 -54416735 - Lx3B LINE L1 -355 6618 6472 3 1674 1241 311 104 24 chr1 142778697 142779204 -54416228 - MTE2b-int LTR MaLR -54 1526 979 3 1674 261 322 33 50 chr1 142779248 142779369 -54416063 - MTE2b-int LTR MaLR -919 661 543 3 1674 1008 279 137 11 chr1 142779373 142779732 -54415700 - MTE2b-int LTR MaLR -1175 405 2 3 1674 647 314 6 0 chr1 142779732 142779904 -54415528 - MTE2b LTR MaLR -2 377 205 3 1674 993 65 7 0 chr1 142780433 142780572 -54414860 + L1_Mus2 LINE L1 6427 6566 0 3 1674 982 116 7 0 chr1 142780589 142780736 -54414696 + B1_Mus1 SINE Alu 1 148 0 3 1674 629 213 113 7 chr1 142780744 142780886 -54414546 - RMER6B LTR ERVK -10 451 295 3 1674 300 132 0 0 chr1 142780959 142780965 -54414467 + (GA)n Simple_repeat Simple_repeat 2 7 0 3 1674 651 60 0 0 chr1 142780965 142781049 -54414383 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 3 1674 300 132 0 0 chr1 142781049 142781095 -54414337 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1674 957 188 58 22 chr1 142781095 142781318 -54414114 - RMER6B LTR ERVK -165 296 66 3 1674 1711 215 39 37 chr1 142781318 142781700 -54413732 + Lx5 LINE L1 6660 7042 -8 3 1674 265 139 0 0 chr1 142781718 142781761 -54413671 - MYSERV6-int LTR ERVK -4204 4755 4713 3 1674 4198 179 43 11 chr1 142781829 142782705 -54412727 - MYSERV6-int LTR ERVK -4262 4697 3794 3 1674 7583 186 32 19 chr1 142782688 142784239 -54411193 - MYSERV6-int LTR ERVK -7048 1911 342 3 1674 378 0 0 0 chr1 142784452 142784494 -54410938 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1674 509 307 42 40 chr1 142784727 142785120 -54410312 - L1MD LINE L1 -3204 2942 2544 3 1674 1298 151 58 0 chr1 142785306 142785531 -54409901 + RMER17B LTR ERVK 97 334 -624 3 1674 4346 97 41 3 chr1 142785539 142786173 -54409259 - L1Md_F2 LINE L1 -14 6568 5911 3 1674 231 229 180 0 chr1 142786183 142786244 -54409188 - MTE2b LTR MaLR -349 72 1 3 1674 7027 101 21 11 chr1 142787375 142788478 -54406954 - L1_Mus3 LINE L1 0 6638 5525 3 1674 711 129 0 17 chr1 142788467 142788585 -54406847 + L1_Mur2 LINE L1 4318 4433 -1444 4 1674 2236 114 118 13 chr1 142788903 142789027 -54406405 - Lx LINE L1 -1 6653 6533 4 1674 192 77 0 0 chr1 142789027 142789053 -54406379 + (CCCA)n Simple_repeat Simple_repeat 4 29 0 4 1674 2236 114 118 13 chr1 142789053 142789311 -54406121 - Lx LINE L1 -122 6532 6232 4 1674 722 274 15 24 chr1 142789354 142789560 -54405872 + B3 SINE B2 5 208 -8 4 1674 840 143 0 0 chr1 142789699 142789839 -54405593 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 4 1674 540 30 0 0 chr1 142789842 142789908 -54405524 + (TTTCC)n Simple_repeat Simple_repeat 5 70 0 4 1674 186 191 0 0 chr1 142789950 142789992 -54405440 + A-rich Low_complexity Low_complexity 2 43 0 4 1674 831 250 25 38 chr1 142790808 142791045 -54404387 - Lx9 LINE L1 -199 7445 7212 4 1674 2311 32 0 4 chr1 142791069 142791347 -54404085 + L1Md_F2 LINE L1 5309 5585 -298 4 1674 8294 38 0 2 chr1 142791348 142792346 -54403086 + L1Md_F2 LINE L1 5587 6582 0 4 1674 25 31 0 0 chr1 142792426 142792458 -54402974 + AT_rich Low_complexity Low_complexity 1 32 0 4 1674 988 103 0 43 chr1 142793099 142793261 -54402171 - L1_Mus2 LINE L1 0 6566 6412 4 1674 393 86 0 0 chr1 142793474 142793532 -54401900 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1674 253 224 17 0 chr1 142794143 142794201 -54401231 - RLTR18 LTR ERVK 0 616 558 4 1674 6628 156 16 17 chr1 142794205 142794358 -54401074 + L1_Mus4 LINE L1 4701 4858 -1025 4 1674 264 30 0 0 chr1 142794358 142794391 -54401041 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1674 7128 126 13 8 chr1 142794391 142796156 -54399276 + L1_Mus4 LINE L1 4859 6629 -7 4 1674 26 0 0 0 chr1 142796916 142796942 -54398490 + AT_rich Low_complexity Low_complexity 1 26 0 4 1674 307 319 28 14 chr1 142797340 142797483 -54397949 + Lx8 LINE L1 7148 7417 -227 4 1674 567 40 0 0 chr1 142797503 142797577 -54397855 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1674 27 29 0 0 chr1 142797718 142797752 -54397680 + AT_rich Low_complexity Low_complexity 1 34 0 4 1674 276 170 0 0 chr1 142798139 142798192 -54397240 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1674 5365 127 22 1 chr1 142799779 142800585 -54394847 - Lx LINE L1 -5 6649 5827 4 1674 37351 46 7 3 chr1 142800593 142806875 -54388557 - L1Md_T LINE L1 0 6585 179 4 1674 2983 146 15 2 chr1 142806874 142807355 -54388077 - L1_Mm LINE L1 -40 5843 5357 4 1674 396 0 0 0 chr1 142807868 142807912 -54387520 + (TTA)n Simple_repeat Simple_repeat 3 46 0 4 1674 488 202 65 49 chr1 142807968 142808112 -54387320 + MT2A LTR ERVL 62 303 -190 4 1674 977 90 0 14 chr1 142808112 142808259 -54387173 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 4 1674 252 280 154 29 chr1 142808259 142808272 -54387160 + MT2A LTR ERVL 304 316 -177 4 1674 266 314 79 36 chr1 142808456 142808595 -54386837 - Lx6 LINE L1 -43 7417 7273 4 1674 3239 93 7 2 chr1 142808606 142809047 -54386385 + L1_Mus3 LINE L1 6128 6570 -68 4 1674 4789 139 75 8 chr1 142809051 142809897 -54385535 + RLTR13D6 LTR ERVK 1 902 0 4 1674 622 181 0 21 chr1 142809967 142810108 -54385324 + GA-rich Low_complexity Low_complexity 1 138 0 4 1674 921 111 15 0 chr1 142810155 142810290 -54385142 - MT2B2 LTR ERVL -440 144 8 4 1674 344 254 246 0 chr1 142810292 142810422 -54385010 + MT2A LTR ERVL 178 339 -194 4 1674 1634 186 52 45 chr1 142810422 142810804 -54384628 - L1_Mm LINE L1 -520 5363 4979 4 1674 243 105 35 17 chr1 142811362 142811420 -54384012 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1674 833 301 57 109 chr1 142811619 142811742 -54383690 + MTE2b LTR MaLR 1 121 -258 4 1674 3022 119 25 11 chr1 142811742 142812217 -54383215 - Lx LINE L1 -1 6653 6172 4 1674 833 297 75 67 chr1 142812217 142812490 -54382942 + MTE2b LTR MaLR 122 370 0 4 1674 439 286 27 27 chr1 142812496 142812679 -54382753 - L1M1 LINE L1 -690 5613 5431 4 1674 291 348 9 9 chr1 142812688 142812804 -54382628 - PB1D7 SINE Alu -4 116 1 4 1674 867 294 88 16 chr1 142813389 142813890 -54381542 + L1_Rod LINE L1 4554 5090 -757 4 1674 5262 18 16 0 chr1 142814640 142815251 -54380181 + L1Md_A LINE L1 5962 6582 0 4 1674 1671 25 0 0 chr1 142815249 142815450 -54379982 + L1Md_A LINE L1 6381 6581 -1 4 1674 2754 47 12 0 chr1 142815591 142815933 -54379499 + ORR1A1 LTR MaLR 1 346 0 4 1674 21 57 0 0 chr1 142816187 142816222 -54379210 + AT_rich Low_complexity Low_complexity 1 35 0 4 1674 387 328 77 122 chr1 142816755 142817311 -54378121 - RLTR18 LTR ERVK -53 563 33 4 1674 528 16 0 0 chr1 142817519 142817580 -54377852 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 4 1674 1072 76 7 14 chr1 142818298 142818444 -54376988 - B1_Mus2 SINE Alu -1 146 2 4 1674 4210 176 29 5 chr1 142818633 142819414 -54376018 + Lx3B LINE L1 6174 6973 0 4 1674 1312 252 87 23 chr1 142820025 142820370 -54375062 - Lx5 LINE L1 -3 7047 6681 4 1674 35273 36 0 0 chr1 142820470 142825987 -54369445 + L1Md_T LINE L1 1 5589 -297 4 1674 8993 5 0 0 chr1 142825987 142826983 -54368449 + L1Md_T LINE L1 5590 6585 0 4 1674 24 53 0 0 chr1 142828779 142828817 -54366615 + AT_rich Low_complexity Low_complexity 1 38 0 4 1674 799 224 9 35 chr1 142828846 142829054 -54366378 + L1_Mur3 LINE L1 5418 5594 -286 4 1674 219 114 0 0 chr1 142829164 142829199 -54366233 + (TCC)n Simple_repeat Simple_repeat 2 36 0 4 1674 612 40 0 0 chr1 142829203 142829278 -54366154 + (CAT)n Simple_repeat Simple_repeat 3 77 0 4 1674 684 377 0 0 chr1 142829362 142829574 -54365858 + B4A SINE B4 77 288 -4 4 1674 249 234 0 0 chr1 142829648 142829712 -54365720 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1674 21 0 0 0 chr1 142829713 142829734 -54365698 + AT_rich Low_complexity Low_complexity 1 21 0 4 1674 261 288 0 0 chr1 142829910 142829976 -54365456 + Lx6 LINE L1 6669 6734 -726 4 1674 929 263 244 16 chr1 142829976 142830358 -54365074 + Lx6 LINE L1 6665 7133 -327 4 1674 273 243 51 51 chr1 142830446 142830524 -54364908 + Lx6 LINE L1 7151 7228 -232 4 1674 3164 101 70 45 chr1 142830605 142831135 -54364297 + L1_Mus2 LINE L1 6024 6566 0 4 1674 4180 132 3 33 chr1 142831842 142832530 -54362902 - Lx LINE L1 -12 6642 5976 4 1674 353 239 26 32 chr1 142832533 142832689 -54362743 - Lx9 LINE L1 -22 7622 7468 4 1674 198 143 0 0 chr1 142833150 142833185 -54362247 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1674 24 32 0 0 chr1 142834989 142835020 -54360412 + AT_rich Low_complexity Low_complexity 1 31 0 4 1674 38 0 0 0 chr1 142835382 142835420 -54360012 + AT_rich Low_complexity Low_complexity 1 38 0 4 1674 636 275 60 0 chr1 142836123 142836272 -54359160 + RSINE1 SINE B4 8 165 0 4 1674 392 129 40 0 chr1 142836274 142836375 -54359057 + (CA)n Simple_repeat Simple_repeat 1 105 0 4 1674 345 42 0 94 chr1 142836375 142836411 -54359021 + HAL1-3A_ME LINE L1 1976 2010 -848 4 1674 411 21 0 0 chr1 142836411 142836459 -54358973 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1674 345 42 0 94 chr1 142836459 142836475 -54358957 + HAL1-3A_ME LINE L1 2011 2023 -835 4 1674 25 0 0 0 chr1 142837058 142837083 -54358349 + AT_rich Low_complexity Low_complexity 1 25 0 4 1674 192 242 0 0 chr1 142837737 142837832 -54357600 + (AGGTG)n Simple_repeat Simple_repeat 4 98 0 4 1674 420 235 0 0 chr1 142837859 142838115 -54357317 + GA-rich Low_complexity Low_complexity 1 256 0 4 1674 259 321 192 18 chr1 142838149 142838368 -54357064 + MLT2C1 LTR ERVL 93 349 -48 4 1674 227 397 25 25 chr1 142838805 142838924 -54356508 - B4A SINE B4 -170 122 4 4 1674 21 0 0 0 chr1 142839239 142839260 -54356172 + AT_rich Low_complexity Low_complexity 1 21 0 4 1674 207 139 0 0 chr1 142839318 142839354 -54356078 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1674 261 0 0 0 chr1 142839467 142839496 -54355936 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1674 4676 161 84 8 chr1 142839496 142840005 -54355427 - Lx2B LINE L1 -29 6971 6401 4 1674 459 0 0 0 chr1 142840005 142840056 -54355376 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 4 1674 4676 161 84 8 chr1 142840056 142840500 -54354932 - Lx2B LINE L1 -600 6400 5947 4 1674 955 281 56 21 chr1 142840527 142841074 -54354358 + Lx7 LINE L1 5363 5930 -1766 4 1674 477 0 0 0 chr1 142841300 142841353 -54354079 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1674 410 301 27 14 chr1 142841413 142841561 -54353871 + MMAR1 DNA Mariner 581 730 -556 4 1674 959 221 15 114 chr1 142841656 142841927 -54353505 + RMER19C LTR ERVK 31 274 -337 4 1674 606 296 12 125 chr1 142841951 142842287 -54353145 + RMER19C LTR ERVK 225 522 -89 4 1674 895 262 132 112 chr1 142842529 142842869 -54352563 - Lx7 LINE L1 -2 7694 7324 4 1674 504 48 0 0 chr1 142842869 142842932 -54352500 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1674 895 262 132 112 chr1 142842932 142843377 -54352055 - Lx7 LINE L1 -373 7323 6893 4 1674 357 24 0 0 chr1 142843385 142843427 -54352005 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 1674 4927 183 65 1 chr1 142843427 142844345 -54351087 - Lx4A LINE L1 -13 7045 6069 4 1674 2727 122 49 23 chr1 142844379 142844865 -54350567 + Lx LINE L1 5835 6333 -321 4 1674 560 274 96 26 chr1 142844881 142845259 -54350173 - Lx7 LINE L1 -1354 6106 5680 4 1674 650 278 77 14 chr1 142845353 142845638 -54349794 + Lx7 LINE L1 6932 7234 -462 4 1674 185 130 14 55 chr1 142845693 142845766 -54349666 + T-rich Low_complexity Low_complexity 5 74 0 4 1674 531 83 0 12 chr1 142846331 142846416 -54349016 + L1Md_F2 LINE L1 6487 6570 -12 4 1674 1809 123 19 28 chr1 142846418 142846735 -54348697 + L1_Mus3 LINE L1 6249 6562 -76 4 1674 973 160 49 15 chr1 142847661 142847864 -54347568 - Lx3A LINE L1 -29 6952 6743 4 1674 234 309 0 0 chr1 142847864 142847958 -54347474 - Lx9 LINE L1 -11 7633 7540 4 1674 306 0 0 0 chr1 142847982 142848016 -54347416 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1674 890 251 35 0 chr1 142848085 142848312 -54347120 + Lx9 LINE L1 7213 7447 -197 4 1674 1748 188 16 9 chr1 142848839 142849161 -54346271 - ORR1A3 LTR MaLR 0 326 3 4 1674 354 23 0 0 chr1 142849412 142849455 -54345977 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1674 379 194 31 12 chr1 142849622 142849784 -54345648 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 4 1674 1267 25 0 12 chr1 142849860 142850021 -54345411 + (TCTCCC)n Simple_repeat Simple_repeat 3 161 0 4 1674 484 15 15 15 chr1 142850022 142850088 -54345344 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1674 844 320 63 6 chr1 142850088 142850406 -54345026 - MTD LTR MaLR -72 347 12 4 1674 353 149 0 15 chr1 142850488 142850556 -54344876 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 4 1674 411 82 29 49 chr1 142850560 142850662 -54344770 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 5 1674 582 203 32 110 chr1 142851217 142851372 -54344060 + B1_Mus1 SINE Alu 6 148 0 5 1674 1188 68 0 0 chr1 142851531 142851679 -54343753 + B1_Mus1 SINE Alu 1 148 0 5 1674 185 65 32 0 chr1 142851680 142851711 -54343721 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1674 2282 326 57 25 chr1 142852164 142853451 -54341981 + Lx8 LINE L1 6129 7456 -17 5 1674 22 56 0 0 chr1 142853451 142853487 -54341945 + AT_rich Low_complexity Low_complexity 1 36 0 5 1674 471 18 0 0 chr1 142853643 142853699 -54341733 + (TTC)n Simple_repeat Simple_repeat 2 57 0 5 1674 321 26 0 0 chr1 142853699 142853737 -54341695 + (TTA)n Simple_repeat Simple_repeat 3 40 0 5 1674 984 150 9 0 chr1 142853827 142854047 -54341385 + CT-rich Low_complexity Low_complexity 1 222 0 5 1674 36 62 0 0 chr1 142854253 142854317 -54341115 + AT_rich Low_complexity Low_complexity 1 64 0 5 1674 434 363 14 64 chr1 142854414 142854632 -54340800 - ID_B1 SINE B4 -7 217 11 5 1674 269 300 43 32 chr1 142855171 142855264 -54340168 + RSINE1 SINE B4 10 103 -62 5 1674 1151 167 5 13 chr1 142855269 142855493 -54339939 - Lx2 LINE L1 -1 6996 6775 5 1674 819 186 5 70 chr1 142855515 142855537 -54339895 - B2_Mm1t SINE B2 -19 174 155 5 1674 2703 96 8 10 chr1 142855537 142855928 -54339504 - Lx3_Mus LINE L1 0 7009 6620 5 1674 968 140 0 13 chr1 142855928 142856090 -54339342 - B2_Mm2 SINE B2 -36 159 2 5 1674 504 116 0 0 chr1 142856275 142856361 -54339071 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1674 23760 52 3 6 chr1 142856458 142860537 -54334895 + L1Md_T LINE L1 268 4434 -1452 5 1674 2077 117 258 27 chr1 142860632 142861081 -54334351 + RLTR6_Mm LTR ERV1 37 589 -65 5 209 58397 35 14 0 chr1 142861096 142868652 -54326780 + RLTR6-int LTR ERV1 1 7778 0 5 1675 2078 109 261 27 chr1 142868760 142869204 -54326228 + RLTR6_Mm LTR ERV1 37 584 -70 5 1675 9633 22 0 0 chr1 142869204 142870379 -54325053 + L1Md_T LINE L1 4415 5589 -297 5 1675 8401 35 0 6 chr1 142870379 142871055 -54324377 + L1Md_T LINE L1 5590 6265 -320 5 1675 4345 16 0 12 chr1 142871055 142871554 -54323878 + MT2_Mm LTR ERVL 1 493 0 5 1675 8401 35 0 6 chr1 142871554 142871931 -54323501 + L1Md_T LINE L1 6266 6585 0 5 1675 931 48 24 0 chr1 142871967 142872093 -54323339 - RLTR10 LTR ERVK 0 390 262 5 1675 908 43 17 0 chr1 142872116 142872233 -54323199 - RLTR10 LTR ERVK -271 119 1 5 1675 270 0 0 0 chr1 142872233 142872263 -54323169 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1675 386 328 72 0 chr1 142872410 142872535 -54322897 + B1_Mur1 SINE Alu 9 142 -7 5 1675 27 100 0 0 chr1 142872580 142872670 -54322762 + AT_rich Low_complexity Low_complexity 1 90 0 5 1675 3597 233 40 41 chr1 142873529 142874576 -54320856 + Lx5 LINE L1 5936 6981 -69 5 1675 24 67 0 0 chr1 142874619 142874664 -54320768 + AT_rich Low_complexity Low_complexity 1 45 0 5 1675 1084 312 64 3 chr1 142874972 142875329 -54320103 - MTD LTR MaLR 0 419 41 5 1675 396 0 0 0 chr1 142875335 142875379 -54320053 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1675 621 82 0 0 chr1 142875379 142875475 -54319957 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 1675 389 359 25 26 chr1 142875858 142876063 -54319369 + B3A SINE B2 7 210 -6 5 1675 3147 158 44 23 chr1 142878377 142878948 -54316484 + Lx2B LINE L1 6414 6996 -4 5 1675 265 180 55 48 chr1 142878954 142879100 -54316332 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 5 1675 419 225 39 19 chr1 142879118 142879272 -54316160 + (TCTA)n Simple_repeat Simple_repeat 1 157 0 5 1675 657 153 0 0 chr1 142879957 142880081 -54315351 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 1675 24 32 0 0 chr1 142880131 142880162 -54315270 + AT_rich Low_complexity Low_complexity 1 31 0 5 1675 23 0 0 0 chr1 142882639 142882662 -54312770 + AT_rich Low_complexity Low_complexity 1 23 0 5 1675 1031 255 31 78 chr1 142882662 142883173 -54312259 - Lx7 LINE L1 0 7696 7210 5 1675 7650 121 38 17 chr1 142883203 142884602 -54310830 - Lx3A LINE L1 0 6981 5555 5 1675 1493 70 0 9 chr1 142884600 142884815 -54310617 + L1_Mur1 LINE L1 4756 4968 -918 5 1675 1696 236 68 28 chr1 142884826 142885234 -54310198 + Lx9 LINE L1 7036 7465 -179 5 1675 333 0 0 0 chr1 142885234 142885271 -54310161 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1675 1696 236 68 28 chr1 142885271 142885438 -54309994 + Lx9 LINE L1 7466 7634 -10 5 1675 256 312 24 0 chr1 142885504 142885629 -54309803 - MER2 DNA MER2_type -127 218 91 5 1675 396 322 133 4 chr1 142885688 142885928 -54309504 - MLT1A0 LTR MaLR -59 306 36 5 1675 1091 116 0 0 chr1 142886248 142886395 -54309037 + B1_Mus1 SINE Alu 2 148 0 5 1675 474 108 0 0 chr1 142886604 142886678 -54308754 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1675 25 31 0 0 chr1 142887274 142887306 -54308126 + AT_rich Low_complexity Low_complexity 1 32 0 5 1675 441 111 0 14 chr1 142887687 142887760 -54307672 - Lx3_Mus LINE L1 -1139 5870 5799 5 1675 6583 127 28 12 chr1 142887760 142888848 -54306584 + Lx3A LINE L1 5877 6981 0 5 1675 183 129 0 0 chr1 142888848 142888879 -54306553 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 5 1675 1882 174 0 0 chr1 142888927 142889248 -54306184 - ORR1A4 LTR MaLR -8 321 1 5 1675 829 274 15 19 chr1 142889248 142889508 -54305924 + Lx5 LINE L1 6792 7050 0 5 1675 3247 97 7 2 chr1 142889508 142889972 -54305460 + L1_Mus3 LINE L1 6167 6632 -6 5 1675 23 33 0 0 chr1 142890080 142890110 -54305322 + AT_rich Low_complexity Low_complexity 1 30 0 5 1675 21 36 0 0 chr1 142890241 142890269 -54305163 + AT_rich Low_complexity Low_complexity 1 28 0 5 1675 324 70 0 0 chr1 142890411 142890454 -54304978 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1675 369 0 0 0 chr1 142891575 142891616 -54303816 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1675 341 300 9 57 chr1 142891888 142891994 -54303438 + RSINE1 SINE B4 65 165 0 5 1675 24 0 0 0 chr1 142892007 142892031 -54303401 + AT_rich Low_complexity Low_complexity 1 24 0 5 1675 352 350 16 0 chr1 142892046 142892169 -54303263 - RSINE1 SINE B4 -38 127 3 5 1675 1804 198 99 0 chr1 142892264 142892647 -54302785 - MTC LTR MaLR 0 421 1 5 1675 321 118 42 21 chr1 142892847 142892942 -54302490 + (TCTCTG)n Simple_repeat Simple_repeat 2 98 0 5 1675 183 42 0 0 chr1 142892942 142892966 -54302466 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1675 216 255 19 19 chr1 142893653 142893705 -54301727 + RSINE1 SINE B4 5 56 -109 5 1675 291 326 95 35 chr1 142893719 142894002 -54301430 + Looper DNA PiggyBac 729 1028 -530 5 1675 723 46 28 0 chr1 142894244 142894352 -54301080 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 5 1675 22 0 0 0 chr1 142894578 142894600 -54300832 + AT_rich Low_complexity Low_complexity 1 22 0 5 1675 5568 126 84 1 chr1 142895011 142896100 -54299332 + Lx LINE L1 5451 6654 0 5 1675 180 0 0 0 chr1 142896433 142896453 -54298979 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1675 581 98 53 32 chr1 142896624 142896719 -54298713 + Lx4A LINE L1 5856 5952 -1106 5 1675 342 242 83 0 chr1 142896719 142896744 -54298688 + RLTR21 LTR ERVK 966 990 -582 5 1675 2204 181 35 10 chr1 142896744 142897141 -54298291 + Lx4A LINE L1 6652 7058 0 5 1675 342 242 83 0 chr1 142897141 142897235 -54298197 + RLTR21 LTR ERVK 991 1094 -478 5 1675 512 382 7 11 chr1 142897355 142897633 -54297799 + B4A SINE B4 2 278 -14 5 1675 24 91 0 0 chr1 142898020 142898086 -54297346 + AT_rich Low_complexity Low_complexity 1 66 0 5 1675 595 366 94 4 chr1 142898095 142898361 -54297071 + B4A SINE B4 1 290 -2 5 1675 313 358 66 19 chr1 142899222 142899433 -54295999 - MLT1B LTR MaLR -2 388 168 5 1675 563 112 11 11 chr1 142899880 142899970 -54295462 + Lx3_Mus LINE L1 6738 6827 -182 5 1675 1058 258 13 30 chr1 142900511 142900815 -54294617 - Lx4B LINE L1 -9 7049 6751 5 1675 279 277 0 0 chr1 142900953 142901018 -54294414 + Lx9 LINE L1 7270 7334 -310 5 1675 345 284 52 23 chr1 142901353 142901526 -54293906 + L1M2 LINE L1 3663 3840 -2303 5 1675 876 273 10 0 chr1 142901536 142901734 -54293698 + Lx6 LINE L1 6977 7176 -284 5 1675 3182 17 0 2 chr1 142902437 142902880 -54292552 - L1Md_F2 LINE L1 -605 5977 5544 5 1675 437 34 0 17 chr1 142902979 142903039 -54292393 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1675 1451 260 64 19 chr1 142903055 142903525 -54291907 - Lx9 LINE L1 -346 7298 6808 5 1675 432 0 0 0 chr1 142903623 142903671 -54291761 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1675 427 303 23 94 chr1 142903719 142903890 -54291542 - B4A SINE B4 -46 246 88 5 1675 466 309 91 40 chr1 142903887 142904062 -54291370 + B3 SINE B2 6 189 -27 5 1675 21 71 0 0 chr1 142904080 142904122 -54291310 + AT_rich Low_complexity Low_complexity 1 42 0 5 1675 1932 131 87 82 chr1 142904180 142904571 -54290861 - RLTR9C LTR ERVK 0 393 1 5 1675 460 116 27 0 chr1 142904575 142904656 -54290776 - ETnERV2-int LTR ERVK -4 7402 7331 5 1675 4904 219 74 72 chr1 142904862 142909109 -54286323 - ETnERV2-int LTR ERVK -3325 4081 2 5 1675 1964 148 58 78 chr1 142909114 142909511 -54285921 - RLTR9C LTR ERVK -4 389 1 5 1675 1167 247 28 78 chr1 142909664 142909984 -54285448 + ORR1B2 LTR MaLR 1 304 -63 5 1675 284 128 51 0 chr1 142910020 142910098 -54285334 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1675 370 331 55 8 chr1 142910726 142910854 -54284578 + RMER20B LTR ERVK 469 602 -25 5 1675 242 297 13 39 chr1 142910849 142910926 -54284506 + RMER20B LTR ERVK 532 606 -21 5 1675 641 327 98 66 chr1 142910936 142911647 -54283785 - Lx8 LINE L1 -907 6566 5833 5 1675 326 188 25 45 chr1 142912307 142912423 -54283009 - MER57D LTR ERV1 -4 430 309 5 1675 30 27 0 0 chr1 142912503 142912540 -54282892 + AT_rich Low_complexity Low_complexity 1 37 0 5 1675 1318 255 15 80 chr1 142912915 142913389 -54282043 - Lx9 LINE L1 -29 7615 7173 5 1675 330 378 0 2 chr1 142913399 142913508 -54281924 + B1_Mur2 SINE Alu 6 112 -8 5 1675 333 0 0 0 chr1 142914984 142915021 -54280411 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1675 34328 66 12 3 chr1 142915893 142920960 -54274472 + L1Md_F3 LINE L1 132 5589 -297 5 1675 7796 49 9 0 chr1 142920961 142921935 -54273497 + L1Md_F3 LINE L1 5591 6573 -14 5 1675 24 0 0 0 chr1 142922295 142922319 -54273113 + AT_rich Low_complexity Low_complexity 1 24 0 5 1675 231 103 0 0 chr1 142923084 142923123 -54272309 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1675 21 0 0 0 chr1 142924088 142924109 -54271323 + AT_rich Low_complexity Low_complexity 1 21 0 6 1675 759 293 99 34 chr1 142924449 142925088 -54270344 + L1MA6 LINE L1 5514 6193 -107 6 1675 548 288 16 0 chr1 142925148 142925273 -54270159 - RSINE1 SINE B4 -36 129 3 6 1675 292 146 55 0 chr1 142925931 142925986 -54269446 - Lx6 LINE L1 -1552 5908 5851 6 1675 635 249 69 0 chr1 142925983 142926200 -54269232 + Lx5 LINE L1 5875 6106 -944 6 1675 836 274 98 8 chr1 142926195 142926431 -54269001 + Lx5 LINE L1 6791 7047 -3 6 1675 258 81 0 0 chr1 142926917 142926954 -54268478 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1675 2862 184 10 8 chr1 142927107 142927589 -54267843 + RMER1A Other Other 475 958 -72 6 1675 2336 232 13 8 chr1 142927589 142928114 -54267318 - RLTR11A LTR ERVK 0 528 1 6 1675 2862 184 10 8 chr1 142928114 142928146 -54267286 + RMER1A Other Other 959 990 -40 6 1675 2093 120 78 9 chr1 142928930 142929274 -54266158 + RLTR9A LTR ERVK 1 368 0 6 1675 5384 141 33 24 chr1 142930362 142930514 -54264918 + Lx3A LINE L1 5996 6129 -852 6 1675 216 0 0 0 chr1 142930514 142930538 -54264894 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 1675 5384 141 33 24 chr1 142930538 142931353 -54264079 + Lx3A LINE L1 6130 6971 -10 6 1675 1715 261 42 19 chr1 142931512 142931942 -54263490 + Lx9 LINE L1 6450 6889 -755 6 1675 2999 12 0 0 chr1 142931942 142932279 -54263153 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1675 56210 19 9 7 chr1 142932279 142938737 -54256695 + IAPEz-int LTR ERVK 8 6476 -5 6 1675 2999 12 0 0 chr1 142938742 142939079 -54256353 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1675 1889 251 79 22 chr1 142939079 142939568 -54255864 + Lx9 LINE L1 6884 7393 -251 6 1675 2299 131 142 19 chr1 142939568 142939997 -54255435 + RLTR45 LTR ERVK 1 482 0 6 1675 1889 251 79 22 chr1 142939997 142940067 -54255365 + Lx9 LINE L1 7394 7479 -165 6 1675 429 95 0 0 chr1 142940067 142940130 -54255302 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1675 1889 251 79 22 chr1 142940130 142940157 -54255275 + Lx9 LINE L1 7480 7506 -138 6 1675 240 343 62 45 chr1 142940217 142940461 -54254971 - MLT1C LTR MaLR -157 310 63 6 1675 281 329 57 101 chr1 142940650 142940897 -54254535 + ORR1D2 LTR MaLR 103 338 -32 6 1675 286 339 81 0 chr1 142942042 142942166 -54253266 - L2a LINE L2 -1 3425 3292 6 1675 331 289 106 49 chr1 142942782 142942924 -54252508 - RSINE1 SINE B4 -11 154 5 6 1675 189 0 0 0 chr1 142943059 142943080 -54252352 + (ATG)n Simple_repeat Simple_repeat 3 23 0 6 1675 236 360 43 51 chr1 142943109 142943226 -54252206 - ID_B1 SINE B4 -6 218 103 6 1675 21 36 0 0 chr1 142943779 142943807 -54251625 + AT_rich Low_complexity Low_complexity 1 28 0 6 1675 27 0 0 0 chr1 142945649 142945676 -54249756 + AT_rich Low_complexity Low_complexity 1 27 0 6 1675 2641 161 132 33 chr1 142945863 142946410 -54249022 + MT2B LTR ERVL 1 601 0 6 1675 576 0 0 0 chr1 142946506 142946570 -54248862 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1675 1109 86 0 0 chr1 142946589 142946729 -54248703 - B1_Mus1 SINE Alu -7 141 2 6 1675 308 188 0 0 chr1 142946829 142946893 -54248539 - Lx9 LINE L1 -11 7633 7570 6 1675 180 125 0 0 chr1 142947005 142947037 -54248395 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 6 1675 528 284 113 20 chr1 142947050 142947352 -54248080 + Lx8 LINE L1 5518 5879 -1581 6 1675 195 162 0 0 chr1 142947635 142947672 -54247760 + GA-rich Low_complexity Low_complexity 2 38 0 6 1675 858 375 26 29 chr1 142947753 142948244 -54247188 + Lx8 LINE L1 6267 6756 -717 6 1675 761 294 63 8 chr1 142948322 142948559 -54246873 - Lx5 LINE L1 -9 7041 6792 6 1675 641 338 43 24 chr1 142948572 142948900 -54246532 + Lx8 LINE L1 6834 7167 -306 6 1675 360 0 0 0 chr1 142949111 142949151 -54246281 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1675 4638 147 41 9 chr1 142949151 142949939 -54245493 + Lx3A LINE L1 6169 6981 0 6 1675 22 0 0 0 chr1 142949939 142949961 -54245471 + AT_rich Low_complexity Low_complexity 1 22 0 6 1675 21 57 0 0 chr1 142950007 142950042 -54245390 + AT_rich Low_complexity Low_complexity 1 35 0 6 1675 536 77 0 13 chr1 142950403 142950482 -54244950 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 6 1675 318 26 0 0 chr1 142950623 142950662 -54244770 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1675 38 22 0 0 chr1 142950803 142950848 -54244584 + AT_rich Low_complexity Low_complexity 1 45 0 6 1675 187 220 77 39 chr1 142950862 142950914 -54244518 + L3 LINE CR1 3109 3162 -1327 6 1675 4053 105 41 36 chr1 142951028 142951348 -54244084 + RMER17A LTR ERVK 1 327 -424 6 1675 915 77 14 7 chr1 142951348 142951491 -54243941 + (TCTCC)n Simple_repeat Simple_repeat 3 146 0 6 1675 4053 105 41 36 chr1 142951491 142951898 -54243534 + RMER17A LTR ERVK 328 731 -20 6 1675 189 0 0 0 chr1 142951979 142952000 -54243432 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1675 21 0 0 0 chr1 142952978 142952999 -54242433 + AT_rich Low_complexity Low_complexity 1 21 0 6 1675 421 385 16 27 chr1 142954060 142954247 -54241185 + B4A SINE B4 14 198 -94 6 1675 1166 255 150 26 chr1 142954256 142954682 -54240750 + RMER1C Other Other 864 1342 0 6 1675 369 0 0 0 chr1 142954764 142954805 -54240627 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1675 352 256 0 23 chr1 142954824 142954912 -54240520 - MTC LTR MaLR -10 409 324 6 1675 4907 47 5 6 chr1 142954887 142955533 -54239899 - MT-int LTR MaLR -64 1034 390 6 1675 639 262 62 0 chr1 142955539 142955699 -54239733 - MTC LTR MaLR -123 298 129 6 1675 369 0 0 0 chr1 142955708 142955749 -54239683 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1675 21 36 0 0 chr1 142957582 142957610 -54237822 + AT_rich Low_complexity Low_complexity 1 28 0 6 1675 3974 149 64 15 chr1 142957838 142958589 -54236843 + Lx3A LINE L1 6188 6975 -6 6 1675 1564 145 20 13 chr1 142958653 142958954 -54236478 - Lx3A LINE L1 -687 6294 5992 6 1675 3764 127 62 8 chr1 142958954 142959587 -54235845 + Lx3A LINE L1 6313 6979 -2 6 1675 197 108 27 0 chr1 142959588 142959625 -54235807 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 6 1675 266 324 0 0 chr1 142959640 142959708 -54235724 - Lx8 LINE L1 -141 7332 7265 6 1675 303 28 0 0 chr1 142961005 142961041 -54234391 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1675 1089 187 86 27 chr1 142962130 142962452 -54232980 - Lx4A LINE L1 -925 6075 5783 6 1675 9165 127 10 13 chr1 142962462 142963516 -54231916 - Lx3_Mus LINE L1 0 7009 5963 6 1675 2216 81 77 15 chr1 142963516 142963841 -54231591 + IAPLTR4 LTR ERVK 1 345 0 6 1675 9165 127 10 13 chr1 142963841 142964208 -54231224 - Lx3_Mus LINE L1 -1047 5962 5592 6 1675 1106 114 0 0 chr1 142964232 142964408 -54231024 + L1_Mur1 LINE L1 1988 2163 -3723 6 1675 871 85 146 0 chr1 142964408 142964538 -54230894 + B1_Mur4 SINE Alu 2 150 0 6 1675 261 0 0 0 chr1 142964538 142964567 -54230865 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1675 2521 79 9 0 chr1 142964572 142964906 -54230526 - L1Md_F2 LINE L1 -462 6120 5784 6 1675 3259 94 2 41 chr1 142964906 142965394 -54230038 + L1_Mus1 LINE L1 6099 6567 0 6 1675 21850 101 22 7 chr1 142965415 142966139 -54229293 + L1_Mur1 LINE L1 2149 2869 -3017 6 1675 591 15 0 0 chr1 142966139 142966207 -54229225 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 6 1675 21850 101 22 7 chr1 142966207 142968816 -54226616 + L1_Mur1 LINE L1 2870 5529 -357 6 1675 1629 156 105 0 chr1 142968814 142969109 -54226323 - Lx4A LINE L1 -88 5789 5464 6 1675 1901 193 24 44 chr1 142969096 142969507 -54225925 + Lx4A LINE L1 6652 7054 -4 6 1675 28 79 0 0 chr1 142969598 142969661 -54225771 + AT_rich Low_complexity Low_complexity 1 63 0 6 1675 7744 162 18 14 chr1 142970121 142971461 -54223971 - Lx3B LINE L1 -3 6970 5626 6 1675 219 69 0 0 chr1 142972470 142972499 -54222933 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 6 1675 612 337 56 22 chr1 142974998 142975268 -54220164 + MLT2B1 LTR ERVL 1 279 -241 6 1675 283 238 0 0 chr1 142975589 142975652 -54219780 - Lx7 LINE L1 -1496 6200 6138 6 1675 379 244 163 0 chr1 142975639 142975762 -54219670 + Lx7 LINE L1 6837 6979 -717 6 1675 6427 127 96 8 chr1 142975793 142976941 -54218491 - Lx3A LINE L1 -2 6979 5731 6 1675 6621 105 0 1 chr1 142976939 142977885 -54217547 + Lx3A LINE L1 4802 5746 -140 6 1675 583 295 101 13 chr1 142977865 142978092 -54217340 + Lx7 LINE L1 6975 7221 -475 6 1675 212 0 36 0 chr1 142978140 142978168 -54217264 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1675 528 59 0 0 chr1 142978210 142978278 -54217154 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1675 2209 106 69 26 chr1 142978889 142979239 -54216193 + RLTR8 LTR ERVK 1 365 0 6 1675 2865 183 85 102 chr1 142979239 142980183 -54215249 + SRV_MM-int LTR ERVK 1 928 -5239 6 1675 12112 91 68 89 chr1 142980176 142980988 -54214444 + SRV_MM-int LTR ERVK 3363 4154 -2013 6 1675 2932 96 10 0 chr1 142980988 142981404 -54214028 - BGLII LTR ERVK 0 421 2 6 1675 12112 91 68 89 chr1 142981404 142981872 -54213560 + SRV_MM-int LTR ERVK 4155 4653 -1514 6 1675 230 308 26 103 chr1 142981872 142981988 -54213444 - LTR40c LTR ERVL -125 340 234 6 1675 12112 91 68 89 chr1 142981988 142982835 -54212597 + SRV_MM-int LTR ERVK 4654 5558 -609 6 1675 1287 208 3 7 chr1 142983035 142983338 -54212094 + SRV_MM-int LTR ERVK 5772 5940 -227 6 1675 2981 104 144 70 chr1 142983338 142983971 -54211461 + RMER17D LTR ERVK 1 680 -209 6 1675 3763 56 0 0 chr1 142983977 142984444 -54210988 + L1Md_F2 LINE L1 5120 5586 -297 6 1675 7849 54 2 3 chr1 142984444 142985441 -54209991 + L1Md_F2 LINE L1 5587 6582 0 6 1675 1119 148 61 5 chr1 142985452 142985649 -54209783 + RMER17D LTR ERVK 679 886 -3 6 1675 1671 103 4 0 chr1 142985650 142985882 -54209550 + SRV_MM-int LTR ERVK 5932 6164 -3 6 1675 2430 99 0 0 chr1 142985882 142986224 -54209208 + RLTR8 LTR ERVK 1 342 -23 6 1675 329 309 8 8 chr1 142986594 142986718 -54208714 + CT-rich Low_complexity Low_complexity 2 125 0 6 1675 388 399 13 7 chr1 142986745 142986894 -54208538 - B4 SINE B4 -4 288 139 6 1675 270 297 116 48 chr1 142988705 142988956 -54206476 - MamRep434 DNA TcMar -61 365 98 6 1675 383 338 59 10 chr1 142988988 142989191 -54206241 - Lx8 LINE L1 -687 6786 6574 6 1675 222 62 0 0 chr1 142989264 142989296 -54206136 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1675 288 53 0 0 chr1 142989588 142989626 -54205806 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1675 26 0 0 0 chr1 142989788 142989814 -54205618 + AT_rich Low_complexity Low_complexity 1 26 0 6 1675 246 336 56 56 chr1 142990086 142990228 -54205204 - Tigger5 DNA MER2_type -2244 162 21 6 1675 622 317 38 7 chr1 142990258 142990464 -54204968 - L1MC LINE L1 -716 5628 5413 6 1675 4902 47 3 5 chr1 142990464 142991079 -54204353 - L1Md_F2 LINE L1 0 6582 5969 6 1675 622 317 75 19 chr1 142991079 142991604 -54203828 - L1MC LINE L1 -932 5412 4857 6 1675 347 296 121 42 chr1 142991864 142992030 -54203402 - MER76 LTR ERVL -469 222 44 6 1675 3551 87 10 6 chr1 142992520 142993016 -54202416 + L1_Mus3 LINE L1 6140 6637 -1 6 1675 2455 170 72 9 chr1 142993429 142993924 -54201508 - L1_Mur2 LINE L1 -4090 1787 1267 6 1675 531 0 0 0 chr1 142993924 142993983 -54201449 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1675 2455 163 290 2 chr1 142993983 142994272 -54201160 - L1_Mur2 LINE L1 -4611 1266 889 6 1675 501 249 0 111 chr1 142996671 142996870 -54198562 - Lx2B LINE L1 0 7000 6824 6 1675 409 252 71 31 chr1 142996883 142997010 -54198422 - B1F SINE Alu -7 142 11 6 1675 180 0 0 0 chr1 142997254 142997274 -54198158 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 6 1675 2641 59 27 0 chr1 142998112 142998171 -54197261 - ORR1A1 LTR MaLR 0 346 288 6 1675 315 0 0 0 chr1 142998171 142998206 -54197226 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1675 2641 59 27 0 chr1 142998206 142998483 -54196949 - ORR1A1 LTR MaLR -59 287 2 6 1675 332 311 139 6 chr1 142998494 142998659 -54196773 - HAL1-3A_ME LINE L1 -388 2470 2284 6 1675 1926 200 3 0 chr1 142998800 142999155 -54196277 + L1_Mur1 LINE L1 5509 5864 -22 7 1676 654 329 75 30 chr1 143000006 143000272 -54195160 - MTE2b LTR MaLR -62 317 40 1 1676 1684 278 102 20 chr1 143000288 143000892 -54194540 - ORR1D2-int LTR MaLR -3 1577 864 2 1676 238 339 50 0 chr1 143001048 143001169 -54194263 - ORR1D2-int LTR MaLR -1196 174 48 2 1676 804 299 103 15 chr1 143001248 143001587 -54193845 - ORR1D2 LTR MaLR 0 370 2 2 1676 561 314 56 77 chr1 143001616 143002226 -54193206 - L1MA8 LINE L1 -133 6158 5538 3 1676 484 86 16 41 chr1 143002441 143002562 -54192870 + (TTTTTG)n Simple_repeat Simple_repeat 3 120 0 4 1676 888 103 12 137 chr1 143002562 143002730 -54192702 - B1_Mus1 SINE Alu 0 148 2 5 1676 542 299 84 67 chr1 143002757 143003148 -54192284 - L1MA8 LINE L1 -789 5354 4957 3 1676 970 317 42 48 chr1 143003150 143003528 -54191904 + MTEa LTR MaLR 1 376 -3 6 1676 369 62 0 0 chr1 143003559 143003607 -54191825 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1676 273 387 71 26 chr1 143004065 143004219 -54191213 - RSINE1 SINE B4 0 165 5 8 1676 327 304 101 66 chr1 143004317 143005010 -54190422 - L1MA8 LINE L1 -2333 3810 3094 3 1676 185 83 0 27 chr1 143005909 143005946 -54189486 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 9 1676 1071 103 7 0 chr1 143005946 143006092 -54189340 - B1_Mus1 SINE Alu 0 148 2 1 1676 23 33 0 0 chr1 143006220 143006250 -54189182 + AT_rich Low_complexity Low_complexity 1 30 0 1 1676 476 175 20 30 chr1 143006338 143006438 -54188994 - Lx2B LINE L1 -680 6320 6222 1 1676 300 91 0 0 chr1 143007414 143007458 -54187974 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1676 504 374 96 19 chr1 143007458 143007728 -54187704 - B4A SINE B4 -1 291 1 1 1676 29 78 0 0 chr1 143008118 143008182 -54187250 + AT_rich Low_complexity Low_complexity 1 64 0 1 1676 582 202 27 18 chr1 143008219 143008330 -54187102 - B3 SINE B2 -102 114 3 1 1676 205 360 40 13 chr1 143008536 143008688 -54186744 - MER5A DNA MER1_type -6 183 28 1 1676 26 0 0 0 chr1 143008838 143008864 -54186568 + AT_rich Low_complexity Low_complexity 1 26 0 1 1676 492 307 11 74 chr1 143009540 143009716 -54185716 + B3A SINE B2 24 188 -10 1 1676 27 29 0 0 chr1 143010137 143010171 -54185261 + AT_rich Low_complexity Low_complexity 1 34 0 2 1676 3196 283 43 43 chr1 143010279 143012262 -54183170 - Lx5 LINE L1 -21 7029 5047 2 1676 713 269 9 4 chr1 143012436 143012664 -54182768 + L1_Mur3 LINE L1 892 1120 -6608 2 1676 1042 305 75 41 chr1 143012823 143013264 -54182168 - RLTR17 LTR ERVK -122 570 115 2 1676 3381 171 15 19 chr1 143013312 143013991 -54181441 + Lx LINE L1 5974 6649 -5 2 1676 3120 226 53 35 chr1 143013991 143014955 -54180477 + L1_Mur3 LINE L1 1141 2129 -3751 2 1676 398 188 10 0 chr1 143015034 143015135 -54180297 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1676 881 312 4 0 chr1 143015281 143015512 -54179920 - Lx6 LINE L1 -42 7418 7187 2 1676 455 363 57 46 chr1 143015857 143016137 -54179295 + B4A SINE B4 10 292 0 2 1676 23 33 0 0 chr1 143016586 143016616 -54178816 + AT_rich Low_complexity Low_complexity 1 30 0 2 1676 250 190 0 17 chr1 143016617 143016645 -54178787 + T-rich Low_complexity Low_complexity 31 58 0 2 1676 1012 91 14 0 chr1 143016645 143016788 -54178644 - B1_Mus2 SINE Alu -2 145 1 3 1676 250 190 0 17 chr1 143016788 143016818 -54178614 + T-rich Low_complexity Low_complexity 1 30 0 3 1676 21 0 0 0 chr1 143016874 143016895 -54178537 + AT_rich Low_complexity Low_complexity 1 21 0 3 1676 21 0 0 0 chr1 143017776 143017797 -54177635 + AT_rich Low_complexity Low_complexity 1 21 0 3 1676 404 325 139 12 chr1 143017854 143018188 -54177244 - MLT1F2 LTR MaLR 0 569 157 3 1676 953 249 71 38 chr1 143018188 143018555 -54176877 - Lx9 LINE L1 -9 7635 7257 3 1676 4306 137 29 18 chr1 143019025 143019745 -54175687 - Lx3A LINE L1 -57 6924 6197 3 1676 29 0 0 0 chr1 143020314 143020343 -54175089 + AT_rich Low_complexity Low_complexity 1 29 0 3 1676 27 49 0 0 chr1 143021471 143021512 -54173920 + AT_rich Low_complexity Low_complexity 1 41 0 3 1676 202 42 78 78 chr1 143021894 143021945 -54173487 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 3 1676 30 0 0 0 chr1 143021967 143021997 -54173435 + AT_rich Low_complexity Low_complexity 1 30 0 4 1676 3302 105 6 2 chr1 143023190 143023688 -54171744 - L1_Mm LINE L1 -2397 3486 2987 4 1676 2806 63 13 5 chr1 143023688 143024073 -54171359 + L1Md_F2 LINE L1 6195 6582 0 4 1676 228 143 0 0 chr1 143024192 143024234 -54171198 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 4 1676 28 48 0 0 chr1 143025484 143025526 -54169906 + AT_rich Low_complexity Low_complexity 1 42 0 4 1676 221 318 0 0 chr1 143026168 143026234 -54169198 + (CATA)n Simple_repeat Simple_repeat 3 68 0 4 1676 192 77 0 0 chr1 143026244 143026270 -54169162 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1676 282 343 0 0 chr1 143026309 143026379 -54169053 - B1F1 SINE Alu -70 79 10 4 1676 2018 132 54 12 chr1 143026484 143026847 -54168585 + Lx3A LINE L1 6544 6974 -7 4 1676 27 0 0 0 chr1 143028561 143028588 -54166844 + AT_rich Low_complexity Low_complexity 1 27 0 4 1676 317 333 211 112 chr1 143028717 143028977 -54166455 + B4A SINE B4 3 288 -4 5 1676 204 259 0 0 chr1 143029012 143029093 -54166339 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1676 22 0 0 0 chr1 143029093 143029115 -54166317 + AT_rich Low_complexity Low_complexity 1 22 0 5 1676 2038 212 15 30 chr1 143029120 143029300 -54166132 - RMER6B LTR ERVK 0 461 293 5 1676 261 0 0 0 chr1 143029300 143029329 -54166103 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1676 2038 212 15 30 chr1 143029329 143029614 -54165818 - RMER6B LTR ERVK -169 292 3 5 1676 212 240 0 0 chr1 143029911 143029961 -54165471 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1676 22 0 0 0 chr1 143030033 143030055 -54165377 + AT_rich Low_complexity Low_complexity 1 22 0 5 1676 4841 144 58 7 chr1 143030347 143031178 -54164254 + Lx3A LINE L1 6071 6979 -2 5 1676 30 0 0 0 chr1 143031178 143031208 -54164224 + AT_rich Low_complexity Low_complexity 1 30 0 5 1676 517 293 103 100 chr1 143031286 143031597 -54163835 - Lx8 LINE L1 -144 7329 7018 5 1676 1912 225 43 7 chr1 143031598 143032014 -54163418 + BGLII_B LTR ERVK 1 431 -10 6 1676 322 232 28 75 chr1 143032018 143032053 -54163379 - Lx8 LINE L1 -445 7028 6995 5 1676 1698 66 13 0 chr1 143032053 143032281 -54163151 - L1Md_F2 LINE L1 0 6582 6352 6 1676 322 232 28 75 chr1 143032281 143032352 -54163080 - Lx8 LINE L1 -479 6994 6927 5 1676 696 289 130 36 chr1 143032391 143032667 -54162765 - Lx8 LINE L1 -621 6852 6551 5 1676 63 14 0 0 chr1 143032794 143032864 -54162568 + AT_rich Low_complexity Low_complexity 1 70 0 6 1676 255 158 0 0 chr1 143032864 143032902 -54162530 - tRNA-Met_ tRNA tRNA -38 38 1 6 1676 30 27 0 0 chr1 143032933 143032970 -54162462 + AT_rich Low_complexity Low_complexity 1 37 0 6 1676 1474 237 89 29 chr1 143033260 143033643 -54161789 - MTC LTR MaLR -3 418 13 6 1676 875 94 71 14 chr1 143035111 143035251 -54160181 + B1_Mus1 SINE Alu 1 148 0 6 1676 30 27 0 0 chr1 143035251 143035288 -54160144 + AT_rich Low_complexity Low_complexity 1 37 0 6 1676 21 0 0 0 chr1 143035369 143035390 -54160042 + AT_rich Low_complexity Low_complexity 1 21 0 6 1676 1082 92 7 0 chr1 143035530 143035672 -54159760 + B1_Mus2 SINE Alu 2 144 -3 6 1676 438 127 0 0 chr1 143035673 143035744 -54159688 + (A)n Simple_repeat Simple_repeat 1 71 0 7 1676 433 315 65 20 chr1 143035787 143035988 -54159444 - RMER15 LTR ERVL -14 561 352 7 1676 817 295 121 4 chr1 143036163 143036435 -54158997 + MTD LTR MaLR 116 419 0 7 1676 276 308 0 55 chr1 143036439 143036549 -54158883 - MLT1D LTR MaLR -378 127 24 7 1676 2164 70 222 0 chr1 143036757 143037072 -54158360 + IAPEY_LTR LTR ERVK 1 385 0 7 1676 7252 103 6 9 chr1 143037072 143038134 -54157298 + IAPEy-int LTR ERVK 1 1058 -6455 7 1676 21147 53 11 7 chr1 143038134 143040833 -54154599 + IAPEy-int LTR ERVK 4804 7513 0 7 1676 3050 68 5 0 chr1 143040833 143041216 -54154216 + IAPEY_LTR LTR ERVK 1 385 0 7 1676 396 0 0 0 chr1 143043092 143043136 -54152296 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1676 703 262 28 9 chr1 143043171 143043387 -54152045 + L1_Mur3 LINE L1 2058 2277 -3603 7 1676 21 36 0 0 chr1 143043992 143044020 -54151412 + AT_rich Low_complexity Low_complexity 1 28 0 7 1676 486 319 111 76 chr1 143044140 143044917 -54150515 - L1MA4 LINE L1 -131 6169 5366 7 1676 479 355 46 33 chr1 143045240 143045694 -54149738 + L1M2 LINE L1 4539 4998 -1145 7 1676 1913 233 47 26 chr1 143045751 143046319 -54149113 + Lx5 LINE L1 5958 6619 -431 8 1676 270 186 0 54 chr1 143046340 143046414 -54149018 + Lx5 LINE L1 6981 7050 0 8 1676 269 250 0 0 chr1 143046435 143046491 -54148941 - Kanga1d DNA Tc2 -361 248 193 8 1676 669 25 0 0 chr1 143046847 143046926 -54148506 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1676 608 269 19 12 chr1 143047510 143047672 -54147760 - ORR1D2 LTR MaLR -2 368 206 8 1676 3832 86 6 2 chr1 143047681 143047793 -54147639 - L1_Mus2 LINE L1 -310 6256 6145 8 1676 1822 37 0 79 chr1 143047793 143048060 -54147372 - L1Md_F3 LINE L1 0 6584 6339 8 1676 3832 86 6 2 chr1 143048060 143048483 -54146949 - L1_Mus2 LINE L1 -422 6144 5720 8 1676 2464 70 3 3 chr1 143048483 143048811 -54146621 + L1_Mus2 LINE L1 6238 6565 -1 8 1676 944 55 8 0 chr1 143049062 143049189 -54146243 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 8 1676 1053 177 60 4 chr1 143049197 143049430 -54146002 - Lx2B LINE L1 -2 6998 6753 8 1676 216 0 0 0 chr1 143049526 143049550 -54145882 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1676 293 305 23 15 chr1 143050441 143050571 -54144861 - L1_Rod LINE L1 -3849 1998 1868 8 1676 1304 253 7 47 chr1 143050572 143050945 -54144487 - RLTR11A LTR ERVK 0 528 152 9 1676 320 230 143 44 chr1 143051909 143052091 -54143341 + Lx9 LINE L1 7337 7536 -108 9 1676 372 22 0 0 chr1 143052129 143052174 -54143258 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1676 276 152 68 96 chr1 143052264 143052337 -54143095 + RLTR25B LTR ERVK 439 509 -519 9 1676 787 58 0 0 chr1 143052274 143052378 -54143054 + B1_Mus2 SINE Alu 42 145 -2 9 1676 441 182 0 13 chr1 143052553 143052631 -54142801 - Lx2B LINE L1 -469 6531 6455 9 1676 570 219 12 18 chr1 143052638 143052801 -54142631 + Lx2B LINE L1 6836 6997 -3 9 1676 21 0 0 0 chr1 143053433 143053454 -54141978 + AT_rich Low_complexity Low_complexity 1 21 0 9 1676 209 236 18 0 chr1 143053610 143053665 -54141767 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 9 1676 186 43 0 0 chr1 143053895 143053918 -54141514 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 1676 267 214 0 0 chr1 143054120 143054190 -54141242 + T-rich Low_complexity Low_complexity 1 70 0 1 1676 360 0 0 0 chr1 143054823 143054863 -54140569 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1676 240 306 22 45 chr1 143054901 143054990 -54140442 - PB1D9 SINE Alu -21 99 13 1 1676 1090 76 7 0 chr1 143054991 143055136 -54140296 + B1_Mm SINE Alu 2 147 0 1 1676 244 48 48 0 chr1 143055141 143055183 -54140249 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1676 279 0 0 0 chr1 143055361 143055392 -54140040 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1676 617 86 0 11 chr1 143055392 143055486 -54139946 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1676 311 264 132 39 chr1 143055566 143055771 -54139661 - L1_Mur3 LINE L1 -85 5795 5572 1 1676 2436 241 100 17 chr1 143055774 143056293 -54139139 + Lx7 LINE L1 6260 6818 -878 1 1676 213 39 0 0 chr1 143056293 143056319 -54139113 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1676 2436 241 100 17 chr1 143056319 143056461 -54138971 + Lx7 LINE L1 6819 6975 -721 1 1676 5837 88 12 6 chr1 143056506 143057340 -54138092 - L1_Mus3 LINE L1 -1 6637 5799 1 1676 1734 156 9 46 chr1 143057340 143057689 -54137743 + L1_Mm LINE L1 5059 5394 -489 1 1676 365 214 58 10 chr1 143057751 143057855 -54137577 + Lx7 LINE L1 6988 7096 -600 1 1676 281 217 29 0 chr1 143057844 143057913 -54137519 - L1_Mur3 LINE L1 -2093 3787 3717 1 1676 2445 192 45 29 chr1 143057959 143058043 -54137389 - L1_Mur3 LINE L1 -3834 2046 1970 1 1676 2723 145 94 2 chr1 143058043 143058521 -54136911 - Lx LINE L1 0 6654 6133 1 1676 2445 192 45 29 chr1 143058521 143059053 -54136379 - L1_Mur3 LINE L1 -3911 1969 1420 1 1676 957 277 70 79 chr1 143059063 143059993 -54135439 - L1_Mur3 LINE L1 -6419 1309 99 1 1676 276 186 40 54 chr1 143060057 143060131 -54135301 + Lx7 LINE L1 7615 7687 -9 1 1676 447 272 115 15 chr1 143060179 143060440 -54134992 + L1M2 LINE L1 4991 5277 -866 1 1676 1507 287 145 19 chr1 143060644 143061216 -54134216 - Lx6 LINE L1 -27 7433 6790 1 1676 687 221 77 0 chr1 143061245 143061409 -54134023 + Lx8 LINE L1 5519 5697 -1776 1 1676 315 356 81 35 chr1 143061920 143062118 -54133314 + ID_B1 SINE B4 11 217 -7 1 1676 270 0 0 0 chr1 143062811 143062841 -54132591 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1676 417 97 0 0 chr1 143062841 143062913 -54132519 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1676 857 202 246 135 chr1 143063558 143063736 -54131696 + MT2A LTR ERVL 1 176 -357 1 1676 498 33 0 0 chr1 143063736 143063796 -54131636 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1676 857 202 246 135 chr1 143063796 143064054 -54131378 + MT2A LTR ERVL 177 494 -39 1 1676 381 22 0 0 chr1 143064054 143064100 -54131332 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1676 857 202 246 135 chr1 143064100 143064142 -54131290 + MT2A LTR ERVL 495 532 -1 1 1676 201 233 0 0 chr1 143064168 143064211 -54131221 + CT-rich Low_complexity Low_complexity 5 47 0 1 1676 4374 125 92 9 chr1 143064602 143065400 -54130032 + RMER17D LTR ERVK 26 889 0 1 1676 1045 68 0 57 chr1 143066117 143066274 -54129158 + B1_Mus1 SINE Alu 1 148 0 1 1676 378 0 0 0 chr1 143066283 143066325 -54129107 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1676 38 0 0 0 chr1 143067189 143067227 -54128205 + AT_rich Low_complexity Low_complexity 1 38 0 1 1676 263 52 33 33 chr1 143067967 143068027 -54127405 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1676 477 90 0 0 chr1 143068299 143068366 -54127066 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1676 24 67 0 0 chr1 143068888 143068933 -54126499 + AT_rich Low_complexity Low_complexity 1 45 0 1 1676 742 293 10 25 chr1 143068947 143069143 -54126289 - B3 SINE B2 0 216 24 1 1676 206 232 36 0 chr1 143069215 143069271 -54126161 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 1 1676 245 345 23 0 chr1 143069271 143069358 -54126074 - PB1D10 SINE Alu -23 94 6 1 1676 21 36 0 0 chr1 143069500 143069528 -54125904 + AT_rich Low_complexity Low_complexity 1 28 0 1 1676 225 219 0 30 chr1 143069855 143069921 -54125511 - L1M3 LINE L1 -436 5735 5672 1 1676 467 329 37 99 chr1 143070592 143070946 -54124486 - RLTR18 LTR ERVK -252 364 33 1 1676 408 132 0 0 chr1 143071771 143071854 -54123578 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1676 485 149 0 0 chr1 143072225 143072299 -54123133 - MT2A LTR ERVL -459 74 1 1 1676 2766 161 69 17 chr1 143072434 143072958 -54122474 - RLTR33 LTR ERVK -127 551 1 1 1676 29 47 0 0 chr1 143073418 143073461 -54121971 + AT_rich Low_complexity Low_complexity 1 43 0 1 1676 817 290 9 0 chr1 143074070 143074284 -54121148 - B3 SINE B2 0 216 1 1 1676 364 319 70 63 chr1 143074404 143074793 -54120639 - RLTR15 LTR ERVK -69 290 17 1 1676 1383 57 0 0 chr1 143075785 143075962 -54119470 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 1 1676 21 36 0 0 chr1 143076049 143076077 -54119355 + AT_rich Low_complexity Low_complexity 1 28 0 1 1676 1395 286 155 66 chr1 143076079 143077067 -54118365 + Lx9 LINE L1 6556 7631 -13 1 1676 297 237 21 0 chr1 143077064 143077161 -54118271 - Lx6 LINE L1 0 7460 7362 1 1676 2617 163 143 6 chr1 143077215 143077733 -54117699 + Lx3C LINE L1 6384 6972 -4 1 1676 2041 237 50 31 chr1 143077745 143078453 -54116979 + Lx9 LINE L1 5221 5971 -1673 1 1676 3554 266 53 61 chr1 143078606 143079797 -54115635 + Lx9 LINE L1 6344 7520 -124 1 1676 423 0 0 0 chr1 143079797 143079844 -54115588 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1676 3554 266 53 61 chr1 143079844 143079956 -54115476 + Lx9 LINE L1 7521 7637 -7 1 1676 22 0 0 0 chr1 143080704 143080726 -54114706 + AT_rich Low_complexity Low_complexity 1 22 0 1 1676 7815 150 27 15 chr1 143081242 143081492 -54113940 + Lx3A LINE L1 5680 5913 -271 1 1676 279 0 0 0 chr1 143081492 143081523 -54113909 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1676 7815 124 21 17 chr1 143081523 143082587 -54112845 + Lx3A LINE L1 5910 6969 -12 1 1676 381 43 0 0 chr1 143082587 143082634 -54112798 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1676 247 349 77 31 chr1 143082691 143082821 -54112611 - B1F SINE Alu -12 137 2 1 1676 14230 87 15 8 chr1 143083285 143086271 -54109161 + L1Md_T LINE L1 98 3067 -2816 1 1676 35350 38 1 1 chr1 143086271 143092324 -54103108 + L1Md_T LINE L1 1 5589 -297 1 1676 8876 8 0 1 chr1 143092324 143093321 -54102111 + L1Md_T LINE L1 5590 6585 0 1 1676 21260 26 0 0 chr1 143093321 143095850 -54099582 + L1Md_T LINE L1 3057 5586 -297 1 1676 8377 34 1 1 chr1 143095850 143096845 -54098587 + L1Md_T LINE L1 5587 6581 -1 1 1676 650 365 4 20 chr1 143097762 143098008 -54097424 + B4 SINE B4 37 278 -14 1 1676 22 35 0 0 chr1 143098083 143098112 -54097320 + AT_rich Low_complexity Low_complexity 1 29 0 1 1676 21 0 0 0 chr1 143098188 143098209 -54097223 + AT_rich Low_complexity Low_complexity 1 21 0 1 1676 824 270 152 24 chr1 143098349 143098679 -54096753 - ORR1D1 LTR MaLR 0 374 3 1 1676 36367 50 8 1 chr1 143098999 143104863 -54090569 - L1Md_T LINE L1 -2 6580 670 1 1676 261 342 25 25 chr1 143105131 143105251 -54090181 + RMER20B LTR ERVK 1 120 -507 1 1676 752 40 10 0 chr1 143106088 143106188 -54089244 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 1 1676 26 30 0 0 chr1 143106233 143106266 -54089166 + AT_rich Low_complexity Low_complexity 1 33 0 1 1676 2267 246 6 21 chr1 143107074 143107594 -54087838 + Lx7 LINE L1 6789 7300 -396 1 1676 267 31 0 0 chr1 143107635 143107667 -54087765 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1676 24 91 0 0 chr1 143107927 143107993 -54087439 + AT_rich Low_complexity Low_complexity 1 66 0 1 1676 24 32 0 0 chr1 143108063 143108094 -54087338 + AT_rich Low_complexity Low_complexity 1 31 0 1 1676 257 347 30 61 chr1 143108851 143108940 -54086492 + MTD LTR MaLR 49 136 -283 1 1676 240 35 0 0 chr1 143108940 143108969 -54086463 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1676 257 347 30 61 chr1 143108969 143109011 -54086421 + MTD LTR MaLR 137 176 -243 1 1676 5585 79 7 5 chr1 143109011 143110048 -54085384 + L1Md_F2 LINE L1 508 1551 -4332 1 1676 4450 47 27 0 chr1 143110043 143110599 -54084833 + L1Md_F2 LINE L1 5016 5586 -297 1 1676 7782 61 2 2 chr1 143110599 143111595 -54083837 + L1Md_F2 LINE L1 5587 6582 0 1 1676 28778 85 3 1 chr1 143111604 143115623 -54079809 + L1Md_F2 LINE L1 1557 5585 -298 1 1676 8042 54 0 0 chr1 143115624 143116620 -54078812 + L1Md_F2 LINE L1 5587 6582 0 1 1676 417 323 78 36 chr1 143116620 143116813 -54078619 + MTD LTR MaLR 145 345 -74 1 1676 692 44 11 0 chr1 143117229 143117319 -54078113 + MERVL-int LTR ERVL 5270 5360 -125 1 1676 383 167 46 35 chr1 143117319 143117406 -54078026 + ORR1A3-int LTR MaLR 553 640 -1323 1 1676 229 246 70 90 chr1 143117380 143117444 -54077988 + ORR1A3-int LTR MaLR 553 613 -1350 1 1676 1783 16 2 0 chr1 143117444 143117674 -54077758 + MT2_Mm LTR ERVL 1 324 -260 1 1676 579 292 5 29 chr1 143117916 143118102 -54077330 + B3 SINE B2 1 173 -22 1 1676 432 0 0 0 chr1 143118594 143118642 -54076790 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1676 1934 192 233 25 chr1 143118706 143119277 -54076155 - RMER6C LTR ERVK 0 690 1 1 1676 21 0 0 0 chr1 143119563 143119584 -54075848 + AT_rich Low_complexity Low_complexity 1 21 0 1 1676 1531 246 32 15 chr1 143121125 143121529 -54073903 - Lx5 LINE L1 -3 7047 6637 1 1676 415 270 16 0 chr1 143121529 143121655 -54073777 + Lx7 LINE L1 5629 5756 -1940 1 1676 708 179 10 156 chr1 143122548 143122740 -54072692 - B2_Mm2 SINE B2 -9 186 23 1 1676 785 322 46 41 chr1 143123927 143124343 -54071089 - Lx9 LINE L1 -357 7287 6783 1 1676 257 320 10 10 chr1 143124364 143124462 -54070970 + PB1D9 SINE Alu 23 120 0 1 1676 435 38 0 0 chr1 143124961 143125014 -54070418 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1676 331 310 6 94 chr1 143125535 143125706 -54069726 + RSINE1 SINE B4 4 159 -6 1 1676 23 54 0 0 chr1 143125757 143125794 -54069638 + AT_rich Low_complexity Low_complexity 1 37 0 1 1676 422 329 43 25 chr1 143126475 143126637 -54068795 - RSINE1 SINE B4 0 165 1 1 209 33871 74 32 5 chr1 143127166 143132307 -54063125 + L1Md_F2 LINE L1 303 5586 -297 1 1677 7882 50 6 1 chr1 143132308 143133298 -54062134 + L1Md_F2 LINE L1 5588 6582 0 1 1677 934 191 73 76 chr1 143135105 143135394 -54060038 + Lx6 LINE L1 4628 4915 -965 1 1677 1944 265 81 12 chr1 143135403 143135973 -54059459 + Lx7 LINE L1 6732 7340 -356 1 1677 594 203 20 0 chr1 143136039 143136192 -54059240 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 1677 755 260 41 61 chr1 143136198 143136542 -54058890 + Lx7 LINE L1 7356 7692 -4 1 1677 503 304 114 21 chr1 143136578 143137051 -54058381 + L1M2 LINE L1 4882 5398 -745 1 1677 1009 322 42 8 chr1 143137261 143137661 -54057771 - Lx6 LINE L1 -2 7458 7045 1 1677 2538 241 31 20 chr1 143137673 143138587 -54056845 + Lx6 LINE L1 5414 6330 -1130 1 1677 21 36 0 0 chr1 143139251 143139279 -54056153 + AT_rich Low_complexity Low_complexity 1 28 0 1 1677 850 179 126 90 chr1 143139467 143139768 -54055664 + Lx5 LINE L1 4076 4387 -1490 1 1677 4484 234 57 23 chr1 143139763 143140915 -54054517 + Lx5 LINE L1 5232 6413 -637 1 1677 3411 72 43 94 chr1 143140915 143141455 -54053977 - RLTR1B LTR ERV1 0 512 1 1 1677 4484 281 44 32 chr1 143141455 143142086 -54053346 + Lx5 LINE L1 6414 7050 0 1 1677 36 23 0 0 chr1 143142097 143142140 -54053292 + AT_rich Low_complexity Low_complexity 1 43 0 1 1677 3187 126 65 21 chr1 143142207 143142394 -54053038 - MusHAL1 LINE L1 -966 1746 1558 1 1677 4305 135 196 58 chr1 143142394 143143302 -54052130 - RLTR13D4 LTR ERVK 0 1033 1 2 1677 3187 126 65 21 chr1 143143302 143143688 -54051744 - MusHAL1 LINE L1 -1155 1557 1148 1 1677 6936 121 102 1 chr1 143143687 143145484 -54049948 + L1Md_T LINE L1 3457 5586 -297 2 1677 8243 39 0 4 chr1 143145485 143146484 -54048948 + L1Md_T LINE L1 5588 6582 0 2 1677 704 167 14 0 chr1 143146515 143146659 -54048773 + L1_Mm LINE L1 4445 4590 -1293 2 1677 9356 55 15 1 chr1 143146657 143148520 -54046912 - L1Md_F3 LINE L1 -4 6580 4692 2 1677 4398 181 5 98 chr1 143148521 143149250 -54046182 + L1_Mm LINE L1 4587 5317 -565 2 1677 775 31 0 0 chr1 143149250 143149348 -54046084 + B1_Mus2 SINE Alu 37 134 -13 2 1677 1151 61 6 18 chr1 143149349 143149517 -54045915 + L1Md_F2 LINE L1 6417 6582 0 2 1677 4398 181 5 98 chr1 143149517 143149732 -54045700 + L1_Mm LINE L1 5319 5533 -350 2 1677 2007 77 13 10 chr1 143149732 143150034 -54045398 + MT-int LTR MaLR 786 1088 -10 2 1677 248 88 0 0 chr1 143150019 143150053 -54045379 - MTB_Mm LTR MaLR -373 34 1 2 1677 524 324 32 50 chr1 143150242 143150463 -54044969 - MER20 DNA MER1_type 0 219 3 2 1677 25 31 0 0 chr1 143151025 143151057 -54044375 + AT_rich Low_complexity Low_complexity 1 32 0 2 1677 23 33 0 0 chr1 143151156 143151186 -54044246 + AT_rich Low_complexity Low_complexity 1 30 0 2 1677 1085 240 100 5 chr1 143151217 143151586 -54043846 - L1_Mur3 LINE L1 -3278 2602 2199 2 1677 822 257 17 0 chr1 143151596 143151771 -54043661 - RMER6D LTR ERVK -9 711 534 2 1677 884 158 24 140 chr1 143151762 143152012 -54043420 - ORR1B1 LTR MaLR -139 255 35 2 1677 330 206 18 73 chr1 143152022 143152132 -54043300 - L1_Mur3 LINE L1 -6757 971 868 2 1677 1614 72 37 5 chr1 143152132 143152484 -54042948 - RLTR1B LTR ERV1 -82 430 1 2 1677 298 136 209 15 chr1 143152975 143153042 -54042390 + RLTR1B LTR ERV1 433 512 0 2 1677 25 31 0 0 chr1 143153819 143153851 -54041581 + AT_rich Low_complexity Low_complexity 1 32 0 2 1677 2730 199 8 0 chr1 143156257 143156754 -54038678 + Lx2B LINE L1 6474 6974 -26 2 1677 1607 176 47 16 chr1 143156745 143157062 -54038370 + Lx2 LINE L1 6671 6997 0 2 1677 22 0 0 0 chr1 143157067 143157089 -54038343 + AT_rich Low_complexity Low_complexity 1 22 0 2 1677 422 235 10 0 chr1 143157264 143157278 -54038154 - Lx6 LINE L1 -1769 5691 5678 2 1677 180 0 0 0 chr1 143157278 143157298 -54038134 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1677 4824 206 28 22 chr1 143157298 143158393 -54037039 - L1_Mm LINE L1 -206 5677 4576 2 1677 38388 7 0 0 chr1 143158394 143163981 -54031451 + L1Md_A LINE L1 1 5586 -297 2 1677 8882 4 4 0 chr1 143163981 143164973 -54030459 + L1Md_A LINE L1 5587 6582 0 2 1677 6391 168 124 53 chr1 143164973 143165309 -54030123 - Lx6 LINE L1 -1294 4583 4247 2 1677 180 0 0 0 chr1 143165309 143165329 -54030103 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1677 6391 168 124 53 chr1 143165329 143166597 -54028835 - Lx6 LINE L1 -1631 4246 2867 2 1677 847 290 60 55 chr1 143166639 143167040 -54028392 + L1VL4 LINE L1 216 618 -5684 2 1677 3906 143 2 22 chr1 143167026 143167888 -54027544 - L1VL4 LINE L1 -2452 1107 267 2 1677 954 103 0 82 chr1 143167919 143168078 -54027354 - B1_Mm SINE Alu 0 147 2 2 1677 255 279 150 35 chr1 143168145 143168418 -54027014 - L1M2 LINE L1 -757 5386 5100 2 1677 903 65 0 0 chr1 143168418 143168541 -54026891 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 2 1677 255 279 150 35 chr1 143168541 143168728 -54026704 - L1M2 LINE L1 -1044 5099 4873 2 1677 25 0 0 0 chr1 143169410 143169435 -54025997 + AT_rich Low_complexity Low_complexity 1 25 0 2 1677 234 0 0 0 chr1 143169460 143169486 -54025946 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1677 1056 96 0 0 chr1 143169486 143169621 -54025811 - B1_Mus2 SINE Alu -11 136 2 2 1677 2490 331 33 15 chr1 143170855 143171894 -54023538 + Lx8 LINE L1 6413 7469 -4 2 1677 8663 83 4 1 chr1 143172012 143173865 -54021567 - L1Md_F2 LINE L1 -16 6566 4707 2 1677 243 0 0 0 chr1 143173922 143173949 -54021483 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1677 572 382 15 5 chr1 143174064 143174264 -54021168 - B4A SINE B4 -89 203 2 2 1677 267 98 49 0 chr1 143174548 143174609 -54020823 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 1677 381 43 0 0 chr1 143174686 143174733 -54020699 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1677 2342 39 7 0 chr1 143174762 143175041 -54020391 - L1Md_F2 LINE L1 -218 6364 6084 2 1677 2118 63 3 7 chr1 143175042 143175330 -54020102 + L1Md_F2 LINE L1 6296 6582 0 2 1677 29 0 0 0 chr1 143175439 143175468 -54019964 + AT_rich Low_complexity Low_complexity 1 29 0 2 1677 309 250 0 0 chr1 143176007 143176067 -54019365 - B1F1 SINE Alu -89 60 1 2 1677 1504 68 31 5 chr1 143176455 143176677 -54018755 - L1_Mus3 LINE L1 0 6638 6411 2 1677 2620 37 58 0 chr1 143176954 143177281 -54018151 - ORR1A0 LTR MaLR 0 346 1 2 1677 343 285 19 26 chr1 143177288 143177443 -54017989 + (CATA)n Simple_repeat Simple_repeat 2 155 0 2 1677 417 319 5 21 chr1 143177507 143177693 -54017739 + L1M2 LINE L1 4856 5038 -1105 2 1677 10863 117 50 37 chr1 143177844 143178548 -54016884 + RLTR22_Mur LTR ERVK 1 730 -1118 2 1677 405 39 0 0 chr1 143178548 143178599 -54016833 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1677 10863 117 50 37 chr1 143178599 143179010 -54016422 + RLTR22_Mur LTR ERVK 731 1111 -737 2 1677 2885 90 0 14 chr1 143179010 143179426 -54016006 + L1Md_F2 LINE L1 6171 6580 -2 2 1677 10863 117 50 37 chr1 143179426 143179573 -54015859 + RLTR22_Mur LTR ERVK 1112 1308 -540 2 1677 381 102 0 0 chr1 143179573 143179632 -54015800 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1677 10863 117 50 37 chr1 143179632 143180191 -54015241 + RLTR22_Mur LTR ERVK 1309 1846 -2 2 1677 494 319 68 30 chr1 143180214 143180777 -54014655 + L1M2 LINE L1 5254 5795 -52 2 1677 348 24 0 0 chr1 143180836 143180877 -54014555 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1677 1098 286 44 0 chr1 143180951 143181266 -54014166 - ORR1D1 LTR MaLR 0 374 46 2 1677 24 32 0 0 chr1 143182090 143182121 -54013311 + AT_rich Low_complexity Low_complexity 1 31 0 2 1677 327 105 0 0 chr1 143182407 143182464 -54012968 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1677 523 325 12 0 chr1 143183874 143184034 -54011398 + B3 SINE B2 2 163 -53 2 1677 27 0 0 0 chr1 143184034 143184061 -54011371 + AT_rich Low_complexity Low_complexity 1 27 0 2 1677 472 262 57 0 chr1 143184169 143184291 -54011141 - B1_Mur1 SINE Alu -1 148 20 2 1677 3350 250 53 59 chr1 143184503 143186316 -54009116 - Lx6 LINE L1 0 7460 6498 2 1677 3443 235 134 20 chr1 143186329 143186427 -54009005 - RMER1A Other Other -24 1006 889 2 1677 465 34 0 0 chr1 143186427 143186486 -54008946 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1677 3443 235 134 20 chr1 143186486 143187285 -54008147 - RMER1A Other Other -142 888 8 2 1677 601 89 0 43 chr1 143187359 143187453 -54007979 - L1_Mus2 LINE L1 -521 6045 5956 2 1677 3673 76 16 0 chr1 143187453 143187953 -54007479 + L1_Mus2 LINE L1 6059 6566 0 2 1677 397 378 20 0 chr1 143187974 143188122 -54007310 - RMER1A Other Other -835 195 45 2 1677 259 296 24 24 chr1 143188099 143188182 -54007250 - RMER1B Other Other -643 423 341 2 1677 24 53 0 0 chr1 143188598 143188636 -54006796 + AT_rich Low_complexity Low_complexity 1 38 0 2 1677 650 308 56 0 chr1 143188871 143189069 -54006363 + B3 SINE B2 2 210 -6 2 1677 344 273 43 57 chr1 143190167 143190307 -54005125 - Lx8 LINE L1 -620 6853 6716 2 1677 417 39 0 0 chr1 143191462 143191513 -54003919 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1677 531 45 0 0 chr1 143191513 143191578 -54003854 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1677 338 317 24 48 chr1 143191967 143192093 -54003339 - ID_B1 SINE B4 -22 202 80 2 1677 762 222 8 119 chr1 143193637 143193872 -54001560 - RMER6-int LTR ERVK -555 2622 2414 2 1677 1378 229 47 23 chr1 143193872 143194257 -54001175 + ORR1B1 LTR MaLR 1 394 0 2 1677 1791 209 127 7 chr1 143194257 143194676 -54000756 + ORR1B1-int LTR MaLR 2 470 -1493 2 1677 855 75 0 0 chr1 143194676 143194783 -54000649 + U6 snRNA snRNA 1 107 0 2 1677 393 348 49 25 chr1 143194816 143194978 -54000454 - MER20 DNA MER1_type -49 170 5 2 1677 675 37 0 0 chr1 143195000 143195082 -54000350 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 2 1677 4348 168 10 16 chr1 143195082 143195904 -53999528 + ORR1B1-int LTR MaLR 465 1277 -686 2 1677 1276 151 0 35 chr1 143195904 143196130 -53999302 - ORR1A4 LTR MaLR 0 329 112 2 1677 7005 101 2 10 chr1 143196163 143197028 -53998404 - L1Md_F2 LINE L1 -3 6579 5722 2 1677 3120 31 51 0 chr1 143197028 143197419 -53998013 + IAPLTR2a LTR ERVK 1 411 0 2 1677 7005 72 0 15 chr1 143197419 143197727 -53997705 - L1Md_F2 LINE L1 -162 5721 5414 2 1677 1931 99 67 78 chr1 143197727 143198088 -53997344 + RLTR8 LTR ERVK 4 360 -5 2 1677 17368 100 21 4 chr1 143198092 143198246 -53997186 + SRV_MM-int LTR ERVK 212 379 -5788 2 1677 3916 47 45 0 chr1 143198246 143198739 -53996693 - L1Md_F3 LINE L1 -1 6583 6069 2 1677 17368 100 21 4 chr1 143198739 143200993 -53994439 + SRV_MM-int LTR ERVK 380 2662 -3505 2 1677 327 96 0 37 chr1 143200974 143201028 -53994404 + SRV_MM-int LTR ERVK 5019 5070 -1097 2 1677 2931 219 81 18 chr1 143201325 143201617 -53993815 - Lx5 LINE L1 0 7050 6720 2 1677 438 36 0 0 chr1 143201617 143201673 -53993759 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1677 2931 219 81 18 chr1 143201673 143202095 -53993337 - Lx5 LINE L1 -331 6719 6291 2 1677 312 277 111 19 chr1 143202788 143202950 -53992482 + L1M5 LINE L1 5350 5526 -714 2 1677 1140 49 0 0 chr1 143205241 143205383 -53990049 + BGLII LTR ERVK 1 142 -279 2 1677 638 92 0 0 chr1 143205383 143205470 -53989962 + BGLII LTR ERVK 335 421 0 2 1677 263 115 0 88 chr1 143205517 143205574 -53989858 + RMER3D-int LTR ERVK 669 720 -2122 2 1677 200 184 0 20 chr1 143205598 143205648 -53989784 + GA-rich Low_complexity Low_complexity 1 49 0 2 1677 507 274 31 82 chr1 143205736 143205931 -53989501 - B3 SINE B2 -3 192 8 2 1677 34 0 0 0 chr1 143206134 143206168 -53989264 + AT_rich Low_complexity Low_complexity 1 34 0 2 1677 561 290 35 21 chr1 143206684 143206891 -53988541 + ORR1D2 LTR MaLR 139 370 0 2 1677 1161 250 119 30 chr1 143208681 143209052 -53986380 - MTD LTR MaLR -3 416 13 2 1677 315 0 0 0 chr1 143209373 143209408 -53986024 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1677 500 174 0 8 chr1 143209484 143209606 -53985826 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1677 219 114 0 0 chr1 143209688 143209723 -53985709 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1677 25 0 0 0 chr1 143209778 143209803 -53985629 + AT_rich Low_complexity Low_complexity 1 25 0 2 1677 539 155 28 28 chr1 143210931 143211037 -53984395 + HY1 scRNA scRNA 1 106 -6 2 1677 971 198 10 10 chr1 143211035 143211234 -53984198 + RLTR23 LTR ERV1 228 426 -4 2 1677 194 325 65 0 chr1 143211724 143211801 -53983631 + L3 LINE CR1 2061 2142 -2347 2 1677 355 283 75 99 chr1 143212715 143213010 -53982422 - RLTR26 LTR ERVK -118 509 163 2 1677 2062 93 3 3 chr1 143213630 143213920 -53981512 - Lx2B LINE L1 -952 6048 5759 2 1677 1311 195 50 26 chr1 143214253 143214643 -53980789 + L1VL4 LINE L1 702 1124 -5531 2 1677 327 314 85 55 chr1 143214700 143214899 -53980533 + L2 LINE L2 1455 1659 -1760 3 1677 1892 112 44 25 chr1 143215294 143215615 -53979817 - IAPLTR2b LTR ERVK 0 327 1 3 1677 1314 104 10 0 chr1 143215991 143216192 -53979240 - Lx LINE L1 -7 6647 6445 3 1677 1063 83 7 0 chr1 143216446 143216591 -53978841 + B1_Mus2 SINE Alu 2 147 0 3 1677 209 136 68 0 chr1 143216591 143216635 -53978797 + A-rich Low_complexity Low_complexity 5 51 0 3 1677 3634 95 15 10 chr1 143216862 143217381 -53978051 + L1Md_F2 LINE L1 6061 6582 0 3 1677 225 94 0 0 chr1 143217391 143217423 -53978009 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 3 1677 465 19 0 0 chr1 143217510 143217564 -53977868 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1677 359 182 36 103 chr1 143217849 143218014 -53977418 - L1_Mur3 LINE L1 -2655 3225 3072 3 1677 718 154 77 0 chr1 143218074 143218217 -53977215 - L1_Mur3 LINE L1 -1799 4081 3928 3 1677 358 118 73 0 chr1 143218217 143218285 -53977147 + L1_Mur3 LINE L1 4285 4357 -1523 3 1677 937 294 124 31 chr1 143218289 143218477 -53976955 + Lx6 LINE L1 6965 7154 -306 3 1677 261 0 0 0 chr1 143218477 143218506 -53976926 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1677 937 294 124 31 chr1 143218506 143218767 -53976665 + Lx6 LINE L1 7155 7456 -4 3 1677 582 15 0 0 chr1 143219085 143219152 -53976280 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1677 506 67 0 13 chr1 143219152 143219228 -53976204 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1677 21 0 0 0 chr1 143219582 143219603 -53975829 + AT_rich Low_complexity Low_complexity 1 21 0 3 1677 201 147 0 0 chr1 143220519 143220553 -53974879 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1677 213 39 0 0 chr1 143220648 143220674 -53974758 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 1677 2648 223 15 0 chr1 143220692 143221356 -53974076 - L1_Mur3 LINE L1 -2516 3361 2688 3 1677 751 295 87 62 chr1 143221356 143221843 -53973589 + RLTR26 LTR ERVK 1 549 -78 3 1677 3186 197 80 77 chr1 143221924 143222903 -53972529 - L1_Mur3 LINE L1 -3176 2701 1720 3 1677 1032 244 18 39 chr1 143222963 143223460 -53971972 - L1_Mur3 LINE L1 -5758 1328 920 3 1677 1038 110 6 11 chr1 143223468 143223643 -53971789 + (TTC)n Simple_repeat Simple_repeat 1 174 0 3 1677 471 165 0 0 chr1 143223646 143223731 -53971701 + CT-rich Low_complexity Low_complexity 1 85 0 3 1677 298 340 11 11 chr1 143224122 143224217 -53971215 - PB1D9 SINE Alu -23 97 3 3 1677 24 77 0 0 chr1 143224264 143224316 -53971116 + AT_rich Low_complexity Low_complexity 1 52 0 3 1677 31268 80 16 4 chr1 143225790 143230981 -53964451 + L1Md_F2 LINE L1 241 5589 -297 3 1677 7674 50 25 6 chr1 143230982 143231959 -53963473 + L1Md_F2 LINE L1 5591 6585 0 3 1677 327 253 33 0 chr1 143232104 143232254 -53963178 - Lx9 LINE L1 -1 7643 7489 3 1677 7720 63 0 2 chr1 143232267 143233432 -53962000 - L1Md_F2 LINE L1 -13 6569 5408 3 1677 447 243 79 0 chr1 143233439 143233579 -53961853 - Lx9 LINE L1 -178 7466 7316 3 1677 1753 278 23 30 chr1 143233631 143234191 -53961241 + Lx9 LINE L1 6586 7141 -503 3 1677 26 64 0 0 chr1 143234330 143234377 -53961055 + AT_rich Low_complexity Low_complexity 1 47 0 3 1677 25 53 0 18 chr1 143235023 143235065 -53960367 + AT_rich Low_complexity Low_complexity 1 42 0 3 1677 1656 69 5 0 chr1 143235065 143235282 -53960150 + L1_Mus2 LINE L1 6349 6566 0 3 1677 25 53 0 18 chr1 143235282 143235296 -53960136 + AT_rich Low_complexity Low_complexity 1 14 0 3 1677 180 200 0 0 chr1 143235573 143235623 -53959809 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1677 29 0 0 0 chr1 143235636 143235665 -53959767 + AT_rich Low_complexity Low_complexity 1 29 0 3 1677 1369 364 55 128 chr1 143236223 143236711 -53958721 - ORR1D2-int LTR MaLR -184 1396 908 3 1677 362 20 40 0 chr1 143236711 143236761 -53958671 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1677 1369 364 55 128 chr1 143236761 143237059 -53958373 - ORR1D2-int LTR MaLR -673 907 674 3 1677 441 81 0 0 chr1 143237059 143237121 -53958311 + (CCA)n Simple_repeat Simple_repeat 2 63 0 3 1677 1369 364 55 128 chr1 143237121 143237468 -53957964 - ORR1D2-int LTR MaLR -907 673 357 3 1677 787 200 21 0 chr1 143237468 143237613 -53957819 - B1_Mur4 SINE Alu -2 148 1 3 1677 1369 260 40 49 chr1 143237613 143237941 -53957491 - ORR1D2-int LTR MaLR -1224 356 4 3 1677 571 328 75 20 chr1 143237943 143238292 -53957140 - ORR1D2 LTR MaLR 0 370 3 3 1677 282 268 0 0 chr1 143238857 143238928 -53956504 + L1_Mur3 LINE L1 314 384 -7328 3 1677 2536 208 112 81 chr1 143238928 143239803 -53955629 - RLTR13D6 LTR ERVK 0 902 1 3 1677 836 286 194 27 chr1 143239803 143240595 -53954837 + L1_Mur3 LINE L1 153 1071 -6657 3 1677 1901 141 32 6 chr1 143240596 143240911 -53954521 - ORR1A2 LTR MaLR -4 323 1 3 1677 7983 158 168 23 chr1 143240914 143242626 -53952806 - ORR1A2-int LTR MaLR -3 1960 1 3 1677 2011 130 12 22 chr1 143242630 143242952 -53952480 - ORR1A2 LTR MaLR -8 319 1 3 1677 1098 75 7 0 chr1 143243077 143243223 -53952209 + B1_Mus2 SINE Alu 1 147 0 3 1677 186 43 0 0 chr1 143243227 143243250 -53952182 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1677 642 169 0 0 chr1 143243256 143243374 -53952058 + GA-rich Low_complexity Low_complexity 1 118 0 3 1677 351 187 47 0 chr1 143243374 143243481 -53951951 + L1_Mur3 LINE L1 1184 1295 -5791 3 1677 5696 223 126 56 chr1 143243479 143243816 -53951616 + L1_Mur3 LINE L1 1600 1941 -3939 3 1677 396 59 0 0 chr1 143243816 143243867 -53951565 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1677 5696 223 126 56 chr1 143243867 143244426 -53951006 + L1_Mur3 LINE L1 1942 2472 -3408 3 1677 240 35 0 0 chr1 143244426 143244455 -53950977 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1677 1024 80 0 7 chr1 143244455 143244593 -53950839 - B1_Mus2 SINE Alu -10 137 1 3 1677 5696 223 126 56 chr1 143244593 143245916 -53949516 + L1_Mur3 LINE L1 2473 3975 -1905 3 1677 5889 167 10 35 chr1 143245909 143247270 -53948162 - Lx2 LINE L1 -388 6609 5284 3 1677 2876 261 66 42 chr1 143247270 143248105 -53947327 + Lx6 LINE L1 6595 7449 -11 3 1677 242 300 0 29 chr1 143248606 143248709 -53946723 + (TATG)n Simple_repeat Simple_repeat 1 100 0 3 1677 275 284 36 36 chr1 143248878 143248962 -53946470 - B4A SINE B4 -206 86 3 3 1677 22 35 0 0 chr1 143250506 143250535 -53944897 + AT_rich Low_complexity Low_complexity 1 29 0 3 1677 481 340 42 25 chr1 143251454 143251620 -53943812 + MTD LTR MaLR 164 328 -91 3 1677 326 120 105 13 chr1 143251630 143251706 -53943726 + Lx5 LINE L1 6968 7050 0 3 1677 8648 113 47 18 chr1 143251930 143253314 -53942118 + Lx3A LINE L1 5516 6976 -5 3 1677 878 140 20 13 chr1 143253894 143254046 -53941386 + URR1B DNA MER1_type 73 225 0 3 1677 220 229 0 0 chr1 143254117 143254165 -53941267 + A-rich Low_complexity Low_complexity 1 48 0 3 1677 225 262 105 90 chr1 143254228 143254505 -53940927 - L1MD2 LINE L1 -394 5965 5685 3 1677 391 306 128 62 chr1 143254766 143255023 -53940409 - L1MD2 LINE L1 -813 5333 5062 3 1677 200 34 0 33 chr1 143255023 143255053 -53940379 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1677 391 306 128 62 chr1 143255053 143255311 -53940121 - L1MD2 LINE L1 -1085 5061 4785 3 1677 309 321 16 74 chr1 143255961 143256082 -53939350 - PB1 SINE Alu -1 126 13 3 1677 203 167 0 0 chr1 143257977 143258019 -53937413 + A-rich Low_complexity Low_complexity 1 42 0 3 1677 22 56 0 0 chr1 143258869 143258905 -53936527 + AT_rich Low_complexity Low_complexity 1 36 0 3 1677 1850 290 108 23 chr1 143260221 143260838 -53934594 + Lx6 LINE L1 6098 6986 -474 3 1677 1079 65 0 0 chr1 143260838 143260977 -53934455 + B1_Mus1 SINE Alu 2 140 -8 3 1677 249 33 0 0 chr1 143260977 143261007 -53934425 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1677 1850 279 162 27 chr1 143261007 143261419 -53934013 + Lx6 LINE L1 6987 7432 -28 3 1678 319 316 84 65 chr1 143261982 143262304 -53933128 - L1MEc LINE L1 -4831 1569 1242 3 1678 1811 229 65 56 chr1 143262304 143263059 -53932373 - ORR1B1-int LTR MaLR -353 1017 196 3 1678 922 267 141 76 chr1 143263052 143263421 -53932011 + MTC-int LTR MaLR 301 693 -565 3 1678 1052 209 176 41 chr1 143263407 143263747 -53931685 + MTC-int LTR MaLR 873 1258 0 3 1678 1557 255 86 10 chr1 143263747 143264131 -53931301 + MTC LTR MaLR 1 413 -8 3 1678 22 0 0 0 chr1 143265142 143265164 -53930268 + AT_rich Low_complexity Low_complexity 1 22 0 3 1678 676 144 42 0 chr1 143265212 143265330 -53930102 - B1_Mus1 SINE Alu 0 148 26 3 1678 664 276 126 87 chr1 143267637 143268041 -53927391 - RLTR23 LTR ERV1 -6 424 5 3 1678 2935 24 0 0 chr1 143268589 143268926 -53926506 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1678 1403 0 0 0 chr1 143268926 143269078 -53926354 - IAPEz-int LTR ERVK 0 6481 6330 3 1678 9106 40 88 22 chr1 143269066 143270277 -53925155 - IAPEz-int LTR ERVK -5183 1298 8 3 1678 2935 24 0 0 chr1 143270277 143270614 -53924818 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1678 243 267 128 0 chr1 143270709 143270795 -53924637 - ORR1E LTR MaLR -210 149 53 3 1678 255 78 39 19 chr1 143271576 143271628 -53923804 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 3 1678 221 200 0 18 chr1 143271920 143271976 -53923456 + T-rich Low_complexity Low_complexity 3 57 0 3 1678 180 0 0 0 chr1 143271984 143272004 -53923428 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 3 1678 1453 279 45 23 chr1 143272027 143272426 -53923006 - Lx5 LINE L1 -44 7006 6599 3 1678 6097 201 43 16 chr1 143272426 143273895 -53921537 - L1_Mur2 LINE L1 -80 5797 4290 3 1678 192 40 0 0 chr1 143273902 143273927 -53921505 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1678 3551 225 51 80 chr1 143273927 143274534 -53920898 - L1_Mur2 LINE L1 -2183 3694 3143 3 1678 4908 101 0 9 chr1 143274534 143275234 -53920198 - L1_Mus2 LINE L1 0 6566 5873 3 1678 3551 225 51 80 chr1 143275234 143275971 -53919461 - L1_Mur2 LINE L1 -2735 3142 2390 3 1678 334 296 68 0 chr1 143275970 143276102 -53919330 - Lx6 LINE L1 -58 7402 7262 3 1678 5628 37 0 3 chr1 143277011 143277694 -53917738 + L1Md_F3 LINE L1 5904 6584 0 3 1678 34 55 0 0 chr1 143278023 143278078 -53917354 + AT_rich Low_complexity Low_complexity 1 55 0 3 1678 21 0 0 0 chr1 143278236 143278257 -53917175 + AT_rich Low_complexity Low_complexity 1 21 0 3 1678 24 53 0 0 chr1 143278396 143278434 -53916998 + AT_rich Low_complexity Low_complexity 1 38 0 3 1678 513 266 22 0 chr1 143278459 143278598 -53916834 + B1_Mus1 SINE Alu 1 142 -6 3 1678 1149 239 55 76 chr1 143279140 143279589 -53915843 + L1_Mur2 LINE L1 1675 2102 -3775 3 1678 648 0 0 0 chr1 143279589 143279661 -53915771 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 3 1678 1149 239 55 76 chr1 143279661 143279700 -53915732 + L1_Mur2 LINE L1 2103 2153 -3724 3 1678 6680 140 31 7 chr1 143279714 143280873 -53914559 - Lx3A LINE L1 -12 6969 5783 3 1678 2302 57 7 0 chr1 143280873 143281172 -53914260 - L1Md_F2 LINE L1 0 6582 6282 3 1678 5047 116 17 18 chr1 143281188 143281855 -53913577 - L1_Mur1 LINE L1 -90 5796 5130 3 1678 4704 57 0 2 chr1 143281855 143282452 -53912980 - L1Md_F2 LINE L1 -2 6580 5985 3 1678 5047 116 17 18 chr1 143282452 143282568 -53912864 - L1_Mur1 LINE L1 -757 5129 5014 3 1678 24 32 0 0 chr1 143283595 143283626 -53911806 + AT_rich Low_complexity Low_complexity 1 31 0 3 1678 366 23 0 0 chr1 143283803 143283846 -53911586 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1678 223 200 17 0 chr1 143284111 143284171 -53911261 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 3 1678 25 0 0 0 chr1 143284760 143284785 -53910647 + AT_rich Low_complexity Low_complexity 1 25 0 3 1678 606 295 41 124 chr1 143284860 143284951 -53910481 - ORR1D2 LTR MaLR -8 362 280 3 1678 2465 174 70 4 chr1 143284951 143285448 -53909984 + Lx2 LINE L1 6467 6996 -1 3 1678 606 295 41 124 chr1 143285448 143285541 -53909891 - ORR1D2 LTR MaLR -91 279 195 3 1678 2110 85 0 23 chr1 143285541 143285790 -53909642 - L1_Mus2 LINE L1 -1 6565 6323 3 1678 4018 66 60 6 chr1 143285790 143286321 -53909111 + LTRIS2 LTR ERV1 5 564 0 3 1678 2110 85 0 23 chr1 143286321 143286373 -53909059 - L1_Mus2 LINE L1 -244 6322 6271 3 1678 606 295 41 124 chr1 143286373 143286551 -53908881 - ORR1D2 LTR MaLR -176 194 29 3 1678 240 211 116 0 chr1 143287196 143287291 -53908141 - Lx9 LINE L1 -7 7637 7532 4 1678 38 0 0 0 chr1 143287291 143287329 -53908103 + AT_rich Low_complexity Low_complexity 1 38 0 4 1678 2724 52 5 55 chr1 143287329 143287713 -53907719 - L1Md_F3 LINE L1 -15 6569 6205 4 1678 180 111 0 0 chr1 143287736 143287763 -53907669 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 4 1678 21 57 0 0 chr1 143288301 143288336 -53907096 + AT_rich Low_complexity Low_complexity 1 35 0 4 1678 372 345 40 11 chr1 143288435 143288611 -53906821 - B3A SINE B2 -16 182 2 4 1678 234 62 0 0 chr1 143288841 143288873 -53906559 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1678 1016 70 28 0 chr1 143288873 143289015 -53906417 - B1_Mus2 SINE Alu 0 147 2 4 1678 429 254 19 145 chr1 143289255 143289462 -53905970 - B3A SINE B2 -11 205 13 4 1678 229 323 159 51 chr1 143290255 143290431 -53905001 - RMER15 LTR ERVL -106 469 275 4 1678 318 327 72 30 chr1 143290768 143290935 -53904497 + L1MCa LINE L1 892 1065 -5443 4 1678 248 250 0 0 chr1 143291082 143291138 -53904294 + L1VL2 LINE L1 520 575 -5760 4 1678 289 111 22 0 chr1 143291160 143291205 -53904227 + MusHAL1 LINE L1 1062 1107 -1605 4 1678 835 75 8 2 chr1 143291176 143291301 -53904131 + L1_Mus1 LINE L1 6358 6500 -138 4 1678 3316 170 29 8 chr1 143291296 143291947 -53903485 + L1_Mur2 LINE L1 3503 4167 -1710 4 1678 263 28 28 0 chr1 143292254 143292290 -53903142 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1678 324 300 57 108 chr1 143293910 143294067 -53901365 - RMER19C LTR ERVK -408 329 181 4 1678 356 0 23 0 chr1 143294067 143294111 -53901321 + (TTATA)n Simple_repeat Simple_repeat 3 47 0 4 1678 939 192 0 5 chr1 143294111 143294299 -53901133 - Lx2A1 LINE L1 -15 6993 6807 4 1678 1008 85 14 0 chr1 143294299 143294440 -53900992 + Lx2A1 LINE L1 5656 5798 -1210 4 1678 1060 83 7 0 chr1 143294440 143294585 -53900847 + B1_Mus2 SINE Alu 1 146 -1 4 1678 465 253 61 33 chr1 143294585 143294695 -53900737 + L1ME3B LINE L1 5832 5946 -294 4 1678 2599 108 5 0 chr1 143294664 143295043 -53900389 + Lx2A1 LINE L1 5785 6165 -843 4 1678 750 205 40 115 chr1 143295043 143295269 -53900163 - RMER19C LTR ERVK -402 209 1 4 1678 381 160 0 0 chr1 143295269 143295344 -53900088 - MurERV4_19-int LTR ERVK 0 5780 5706 4 1678 351 0 0 0 chr1 143295459 143295498 -53899934 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1678 263 363 133 0 chr1 143295615 143295750 -53899682 - RSINE1 SINE B4 -10 155 3 4 1678 1181 162 79 18 chr1 143295809 143296086 -53899346 + RMER12B LTR ERVK 869 1162 -242 4 1678 937 134 12 30 chr1 143296098 143296267 -53899165 + B2_Mm2 SINE B2 27 192 -3 4 1678 829 204 126 10 chr1 143297978 143298176 -53897256 + ORR1B2 LTR MaLR 5 225 -142 4 1678 665 214 81 27 chr1 143298230 143298379 -53897053 + ORR1B2-int LTR MaLR 1 157 -1352 4 1678 498 252 94 0 chr1 143298524 143298651 -53896781 - Lx4A LINE L1 -516 6542 6404 4 1678 10098 86 5 4 chr1 143298646 143300713 -53894719 - L1Md_F2 LINE L1 -6 6576 4508 4 1678 1390 206 22 46 chr1 143300717 143301084 -53894348 - Lx2B LINE L1 -611 6389 6032 4 1678 3906 156 31 23 chr1 143301077 143301819 -53893613 - L1_Mur1 LINE L1 -366 5520 4773 4 1678 23 54 0 0 chr1 143302151 143302188 -53893244 + AT_rich Low_complexity Low_complexity 1 37 0 4 1678 23 0 0 0 chr1 143302286 143302309 -53893123 + AT_rich Low_complexity Low_complexity 1 23 0 4 1678 21 0 0 0 chr1 143302978 143302999 -53892433 + AT_rich Low_complexity Low_complexity 1 21 0 4 1678 3377 185 122 14 chr1 143303194 143303885 -53891547 - Lx4A LINE L1 0 7058 6294 4 1678 232 307 59 34 chr1 143304452 143304570 -53890862 + MLT1D LTR MaLR 12 132 -373 4 1678 307 297 138 47 chr1 143304970 143305419 -53890013 - L1MC3 LINE L1 -133 7652 7163 4 1678 499 322 67 13 chr1 143305744 143306059 -53889373 - L1MD LINE L1 -2299 5696 5365 4 1678 781 319 56 24 chr1 143306068 143306408 -53889024 + MTE2b LTR MaLR 9 359 -20 4 1678 213 140 0 109 chr1 143306494 143306558 -53888874 + T-rich Low_complexity Low_complexity 2 58 0 4 1678 23 54 0 0 chr1 143306642 143306679 -53888753 + AT_rich Low_complexity Low_complexity 1 37 0 4 1678 222 91 0 0 chr1 143307186 143307219 -53888213 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4 1678 342 0 0 0 chr1 143307609 143307647 -53887785 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1678 1035 115 0 0 chr1 143308309 143308466 -53886966 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 4 1678 246 156 0 0 chr1 143309391 143309436 -53885996 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1678 204 40 0 0 chr1 143309438 143309463 -53885969 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 1678 23 54 0 0 chr1 143310068 143310105 -53885327 + AT_rich Low_complexity Low_complexity 1 37 0 4 1678 4189 99 80 16 chr1 143310110 143310786 -53884646 - Lx3A LINE L1 -6 6975 6257 4 1678 341 161 0 0 chr1 143310787 143310849 -53884583 - Lx3A LINE L1 -769 6212 6151 4 1678 279 306 0 0 chr1 143310937 143311009 -53884423 - MTC LTR MaLR -349 72 1 4 1678 4067 241 45 13 chr1 143311510 143312171 -53883261 - Lx5 LINE L1 -429 6621 5947 4 1678 223 26 24 49 chr1 143312171 143312212 -53883220 + (TTG)n Simple_repeat Simple_repeat 3 42 0 4 1678 4067 224 44 8 chr1 143312212 143313118 -53882314 - Lx5 LINE L1 -1104 5946 4999 4 1678 342 339 24 0 chr1 143313097 143313262 -53882170 + L1M2 LINE L1 4844 5012 -1131 4 1678 333 269 42 7 chr1 143313350 143313492 -53881940 + L1M2 LINE L1 5281 5427 -870 4 1678 215 39 36 73 chr1 143316528 143316583 -53878849 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1678 569 204 38 0 chr1 143316598 143316730 -53878702 - Lx3C LINE L1 0 6976 6840 4 1678 606 159 0 0 chr1 143316823 143316930 -53878502 + (CTA)n Simple_repeat Simple_repeat 3 109 0 4 1678 231 94 0 0 chr1 143316930 143316962 -53878470 + (CAT)n Simple_repeat Simple_repeat 1 32 0 4 1678 876 338 70 27 chr1 143316962 143317448 -53877984 + Lx8 LINE L1 6761 7267 -206 4 1678 514 232 4 141 chr1 143317576 143317817 -53877615 - RMER1C Other Other 0 1342 1135 4 1678 3245 163 33 36 chr1 143317820 143318464 -53876968 - RLTR26 LTR ERVK 0 642 1 4 1678 325 279 45 76 chr1 143318670 143318802 -53876630 - RMER1C Other Other -209 1133 1006 4 1678 594 219 162 18 chr1 143319771 143319999 -53875433 - Lx9 LINE L1 -7 7637 7377 4 1678 1041 84 0 34 chr1 143320111 143320259 -53875173 + B1_Mus1 SINE Alu 1 143 -5 4 1678 1748 169 15 12 chr1 143320334 143320664 -53874768 - Lx2 LINE L1 0 6997 6667 4 1678 795 191 85 17 chr1 143320664 143320840 -53874592 + Lx2 LINE L1 6504 6691 -306 4 1678 440 343 15 10 chr1 143321368 143321574 -53873858 + Lx9 LINE L1 6571 6777 -867 4 1678 231 354 94 12 chr1 143321577 143321737 -53873695 + Lx8 LINE L1 7131 7303 -170 4 1678 185 65 32 0 chr1 143321764 143321795 -53873637 + (CATAA)n Simple_repeat Simple_repeat 1 32 0 4 1678 1587 254 67 11 chr1 143321916 143322649 -53872783 + Lx7 LINE L1 5489 6282 -1414 4 1678 7276 83 7 29 chr1 143322984 143324081 -53871351 + L1_Mus2 LINE L1 5505 6624 -376 4 1678 531 31 0 0 chr1 143324081 143324146 -53871286 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1678 3458 254 64 54 chr1 143324146 143324530 -53870902 + L1_Mus2 LINE L1 6625 7000 0 4 1678 781 215 0 41 chr1 143324592 143324786 -53870646 - Lx LINE L1 0 6997 6812 4 1678 282 56 0 0 chr1 143324829 143324865 -53870567 + (TTA)n Simple_repeat Simple_repeat 2 37 0 4 1678 1112 56 14 0 chr1 143324865 143325008 -53870424 - B1_Mm SINE Alu -2 145 1 4 1678 26 50 0 0 chr1 143325016 143325056 -53870376 + AT_rich Low_complexity Low_complexity 1 40 0 4 1678 1679 182 15 3 chr1 143325133 143325464 -53869968 - Lx LINE L1 -3 6651 6317 4 1678 209 30 0 57 chr1 143325472 143325507 -53869925 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1678 721 252 101 43 chr1 143326722 143327070 -53868362 + ORR1D2 LTR MaLR 3 370 0 4 1678 3893 174 8 15 chr1 143327480 143328228 -53867204 - Lx2 LINE L1 -1 6996 6254 4 1678 1846 280 41 7 chr1 143328259 143328796 -53866636 - Lx9 LINE L1 -606 7038 6484 4 1678 317 256 56 0 chr1 143328849 143328939 -53866493 - L1M2 LINE L1 -885 5258 5164 4 1678 1680 224 56 10 chr1 143329473 143329977 -53865455 + RLTR11A2 LTR ERVK 1 527 0 4 1678 24 53 0 0 chr1 143330810 143330848 -53864584 + AT_rich Low_complexity Low_complexity 1 38 0 4 1678 242 386 83 8 chr1 143331005 143331138 -53864294 - B4A SINE B4 -148 144 2 4 1678 1699 44 93 0 chr1 143333067 143333292 -53862140 - L1Md_A LINE L1 0 6582 6337 4 1678 417 95 0 0 chr1 143333410 143333473 -53861959 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1678 459 0 0 0 chr1 143333519 143333570 -53861862 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1678 426 154 0 0 chr1 143333655 143333720 -53861712 - tRNA-Asn-AAC tRNA tRNA 0 77 13 4 1678 3713 92 10 2 chr1 143333720 143334241 -53861191 + L1_Mus2 LINE L1 6038 6562 -4 4 1678 30 0 0 0 chr1 143334241 143334271 -53861161 + AT_rich Low_complexity Low_complexity 1 30 0 4 1678 3201 91 0 0 chr1 143334873 143335312 -53860120 - L1_Mus1 LINE L1 -427 6140 5702 4 1678 3267 55 31 0 chr1 143335312 143335727 -53859705 + L1_Mus1 LINE L1 6139 6566 -1 4 1678 315 0 0 0 chr1 143335770 143335805 -53859627 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1678 263 332 36 17 chr1 143336166 143336314 -53859118 - B3A SINE B2 -39 156 2 4 1678 25 51 0 0 chr1 143336730 143336769 -53858663 + AT_rich Low_complexity Low_complexity 1 39 0 4 1678 2916 161 2 4 chr1 143336881 143337385 -53858047 - Lx2 LINE L1 0 6997 6495 4 1678 23 101 0 0 chr1 143337420 143337499 -53857933 + AT_rich Low_complexity Low_complexity 1 79 0 4 1678 1368 294 30 42 chr1 143337848 143338465 -53856967 - Lx6 LINE L1 -6 7454 6738 4 1678 1798 215 59 47 chr1 143338465 143338958 -53856474 + RLTR19 LTR ERVK 1 499 0 4 1678 782 224 9 90 chr1 143338958 143339041 -53856391 - Lx6 LINE L1 -723 6737 6657 4 1678 2683 174 14 4 chr1 143340077 143340566 -53854866 + Lx2 LINE L1 6503 6996 -1 4 1678 6829 9 0 1 chr1 143340690 143341460 -53853972 - L1Md_T LINE L1 0 6582 5814 4 1678 1690 5 0 0 chr1 143341460 143341650 -53853782 + L1Md_T LINE L1 5617 5806 -776 4 1678 35 88 0 0 chr1 143342385 143342476 -53852956 + AT_rich Low_complexity Low_complexity 1 91 0 4 1678 27 49 0 0 chr1 143342642 143342683 -53852749 + AT_rich Low_complexity Low_complexity 1 41 0 4 1678 30 69 0 0 chr1 143342803 143342861 -53852571 + AT_rich Low_complexity Low_complexity 1 58 0 4 1678 23 33 0 0 chr1 143343183 143343213 -53852219 + AT_rich Low_complexity Low_complexity 1 30 0 5 1678 6617 105 25 6 chr1 143343389 143344374 -53851058 - Lx3_Mus LINE L1 -8 7001 5998 5 1678 294 313 64 43 chr1 143344639 143344779 -53850653 - B3 SINE B2 -73 143 1 5 1678 2311 270 61 11 chr1 143345194 143345953 -53849479 - Lx9 LINE L1 -542 7102 6306 5 1678 1152 296 40 5 chr1 143346024 143346421 -53849011 + Lx9 LINE L1 7072 7482 -162 5 1678 21 0 0 0 chr1 143346683 143346704 -53848728 + AT_rich Low_complexity Low_complexity 1 21 0 5 1678 1652 253 53 2 chr1 143347537 143348050 -53847382 - RMER15 LTR ERVL -5 570 1 5 1678 1350 254 108 67 chr1 143348097 143348612 -53846820 - RMER15-int LTR ERVL -411 4588 4049 5 1678 2379 204 19 26 chr1 143348612 143349140 -53846292 + RLTR28 LTR ERVL 1 524 0 5 1678 1350 254 108 67 chr1 143349140 143349160 -53846272 - RMER15-int LTR ERVL -951 4048 4031 5 1678 3248 304 56 33 chr1 143349154 143350346 -53845086 - RMER15-int LTR ERVL -2621 2378 1159 5 1678 271 150 0 143 chr1 143350413 143350483 -53844949 + RMER15-int LTR ERVL 1165 1224 -3775 5 1678 762 281 66 31 chr1 143350523 143350810 -53844622 - RMER15-int LTR ERVL -3901 1098 802 5 1678 1672 323 84 4 chr1 143350811 143351373 -53844059 - RMER15-int LTR ERVL -4369 630 24 5 1678 2326 226 69 35 chr1 143351384 143351935 -53843497 - RMER15 LTR ERVL 0 575 6 5 1678 509 94 12 0 chr1 143352383 143352468 -53842964 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 1678 435 19 0 0 chr1 143352468 143352520 -53842912 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1678 1387 246 143 33 chr1 143352527 143352952 -53842480 + RLTR28B LTR ERVL 9 480 -1 5 1678 204 67 0 0 chr1 143353563 143353593 -53841839 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1678 1235 27 0 0 chr1 143353598 143353744 -53841688 - B1_Mm SINE Alu 0 147 2 5 1678 189 0 0 0 chr1 143353889 143353910 -53841522 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1678 407 194 10 0 chr1 143355141 143355244 -53840188 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 1678 1728 276 58 72 chr1 143356129 143356868 -53838564 - RMER1B Other Other 0 1066 146 5 1678 343 295 26 95 chr1 143356868 143356984 -53838448 + RMER1A Other Other 85 192 -838 5 1678 300 244 58 8 chr1 143357195 143357315 -53838117 - L1MA5 LINE L1 -21 6279 6154 5 1678 550 271 90 39 chr1 143357552 143357786 -53837646 + L1MA6 LINE L1 5629 5874 -426 5 1678 476 390 55 12 chr1 143357996 143358250 -53837182 + B4A SINE B4 2 266 -26 5 1678 21 0 0 0 chr1 143358596 143358617 -53836815 + AT_rich Low_complexity Low_complexity 1 21 0 5 1678 989 109 6 12 chr1 143358664 143358831 -53836601 + L1Md_F2 LINE L1 6414 6579 -3 5 1678 444 174 0 0 chr1 143358910 143359002 -53836430 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1678 425 200 0 145 chr1 143359798 143359915 -53835517 + MT2B LTR ERVL 165 264 -337 5 1678 1016 67 0 29 chr1 143359815 143359954 -53835478 + B1_Mus1 SINE Alu 14 148 0 5 1678 195 100 0 0 chr1 143359954 143359984 -53835448 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 5 1678 26 30 0 0 chr1 143359984 143360017 -53835415 + AT_rich Low_complexity Low_complexity 1 33 0 5 1678 225 263 0 17 chr1 143360455 143360513 -53834919 - Lx7 LINE L1 -575 7121 7065 5 1678 295 301 0 26 chr1 143360504 143360620 -53834812 + Lx7 LINE L1 7563 7675 -21 5 1678 807 125 0 19 chr1 143360648 143360803 -53834629 + RMER17B LTR ERVK 312 463 -495 5 1678 419 198 93 9 chr1 143361438 143361545 -53833887 - MTD LTR MaLR 0 419 304 5 1678 200 246 0 55 chr1 143361650 143361723 -53833709 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 5 1678 364 185 232 36 chr1 143361882 143361994 -53833438 - Lx2B LINE L1 -3 6997 6864 5 1678 902 193 5 15 chr1 143361996 143362191 -53833241 + Lx2B LINE L1 5980 6172 -828 5 1678 2516 124 20 42 chr1 143362193 143362259 -53833173 - MTB_Mm LTR MaLR -8 399 328 5 1678 303 71 0 0 chr1 143362259 143362301 -53833131 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1678 2516 124 20 42 chr1 143362301 143362639 -53832793 - MTB_Mm LTR MaLR -80 327 4 5 1678 326 225 146 0 chr1 143362641 143362730 -53832702 + Lx2B LINE L1 6154 6255 -742 5 1678 207 204 0 0 chr1 143363227 143363271 -53832161 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 5 1678 3010 124 15 4 chr1 143363271 143363740 -53831692 - Lx3_Mus LINE L1 -11 6998 6525 5 1678 375 302 98 86 chr1 143363872 143364035 -53831397 + B3A SINE B2 1 165 -30 5 1678 474 18 0 0 chr1 143364044 143364099 -53831333 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1678 270 0 0 0 chr1 143364099 143364128 -53831304 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1678 745 298 165 20 chr1 143364443 143364588 -53830844 - Lx8 LINE L1 -3 7470 7292 5 1678 504 121 0 0 chr1 143364588 143364679 -53830753 + (TATG)n Simple_repeat Simple_repeat 4 94 0 5 1678 745 295 218 25 chr1 143364679 143365242 -53830190 - Lx8 LINE L1 -182 7291 6632 5 1678 408 280 47 23 chr1 143365722 143365850 -53829582 + B1_Mur2 SINE Alu 19 149 0 5 1678 31 0 0 0 chr1 143365927 143365958 -53829474 + AT_rich Low_complexity Low_complexity 1 31 0 5 1678 25 0 0 0 chr1 143366526 143366551 -53828881 + AT_rich Low_complexity Low_complexity 1 25 0 5 1678 189 0 0 0 chr1 143366586 143366607 -53828825 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 1678 36 40 0 0 chr1 143368236 143368286 -53827146 + AT_rich Low_complexity Low_complexity 1 50 0 5 1678 390 212 0 0 chr1 143368921 143369020 -53826412 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1678 343 369 91 51 chr1 143369022 143369296 -53826136 - B4A SINE B4 0 292 8 5 1678 21 36 0 0 chr1 143369331 143369359 -53826073 + AT_rich Low_complexity Low_complexity 1 28 0 5 1678 270 0 0 0 chr1 143369604 143369634 -53825798 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1678 30 27 0 0 chr1 143369638 143369675 -53825757 + AT_rich Low_complexity Low_complexity 1 37 0 5 1678 605 335 87 0 chr1 143370240 143370515 -53824917 - Lx8 LINE L1 -568 6905 6607 5 1678 618 157 101 16 chr1 143370517 143370646 -53824786 + RMER5 LTR ERV1 395 534 0 5 1678 260 236 85 102 chr1 143370702 143370820 -53824612 + MIRc SINE MIR 34 156 -112 5 1678 182 159 45 0 chr1 143370848 143370892 -53824540 + CT-rich Low_complexity Low_complexity 4 49 0 5 1678 2176 161 14 11 chr1 143370907 143371353 -53824079 + RMER17D LTR ERVK 27 473 -416 5 1678 846 189 0 0 chr1 143371362 143371542 -53823890 + CT-rich Low_complexity Low_complexity 1 180 0 5 1678 535 189 15 0 chr1 143371554 143371686 -53823746 + CT-rich Low_complexity Low_complexity 1 134 0 5 1678 1446 206 81 66 chr1 143371695 143371812 -53823620 + RMER17A LTR ERVK 275 385 -504 5 1678 1013 136 11 0 chr1 143371812 143371988 -53823444 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1678 2299 149 37 31 chr1 143371988 143372477 -53822955 + RMER17A LTR ERVK 263 887 -2 5 1678 378 0 0 0 chr1 143372607 143372649 -53822783 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1678 267 31 0 0 chr1 143372649 143372680 -53822752 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1678 348 317 65 0 chr1 143372888 143373011 -53822421 + Lx8 LINE L1 6392 6522 -951 5 1678 1078 55 14 0 chr1 143373890 143374035 -53821397 + L1Md_A LINE L1 6433 6579 -3 5 1678 651 256 18 18 chr1 143374059 143374236 -53821196 - B3 SINE B2 -16 179 3 5 1678 308 64 0 21 chr1 143374261 143374309 -53821123 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1678 512 291 0 0 chr1 143374313 143374447 -53820985 - B1_Mus1 SINE Alu -14 134 1 5 1678 5088 66 5 0 chr1 143374486 143375140 -53820292 + L1Md_F2 LINE L1 5926 6582 0 5 1678 3850 66 2 23 chr1 143376125 143376637 -53818795 - L1_Mus2 LINE L1 0 6566 6066 5 1678 3345 106 8 5 chr1 143376637 143377155 -53818277 + L1_Mus2 LINE L1 5651 6518 -482 5 1678 651 114 143 0 chr1 143377279 143377384 -53818048 - Lx3_Mus LINE L1 -205 6804 6685 5 1678 22 70 0 0 chr1 143378016 143378059 -53817373 + AT_rich Low_complexity Low_complexity 1 43 0 5 1678 609 278 40 29 chr1 143378278 143378452 -53816980 - B3 SINE B2 -2 214 39 5 1678 420 283 70 29 chr1 143378475 143378646 -53816786 - Lx5 LINE L1 0 7050 6873 5 1678 2948 280 61 109 chr1 143378773 143379079 -53816353 - RLTR22_Mur LTR ERVK -180 1668 1344 5 1678 1041 117 0 0 chr1 143379079 143379416 -53816016 + (CA)n Simple_repeat Simple_repeat 1 337 0 5 1678 2948 280 61 109 chr1 143379416 143379628 -53815804 - RLTR22_Mur LTR ERVK -505 1343 1128 5 1678 245 39 19 56 chr1 143379628 143379682 -53815750 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 5 1678 2948 280 61 109 chr1 143379682 143379911 -53815521 - RLTR22_Mur LTR ERVK -721 1127 897 5 1678 1318 57 46 0 chr1 143379911 143380086 -53815346 - B2_Mm1t SINE B2 -10 183 1 5 1678 2948 280 61 109 chr1 143380086 143381081 -53814351 - RLTR22_Mur LTR ERVK -952 896 5 5 1678 863 168 13 0 chr1 143381137 143381292 -53814140 - Lx4A LINE L1 -1045 6013 5857 5 1678 1989 141 12 3 chr1 143381294 143381629 -53813803 - Lx4A LINE L1 -1134 5924 5587 5 1678 651 173 28 57 chr1 143381652 143381793 -53813639 + Lx4A LINE L1 6688 6824 -234 5 1678 387 0 0 0 chr1 143381794 143381837 -53813595 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1678 1037 123 7 0 chr1 143381838 143381992 -53813440 - B2_Mm1a SINE B2 -38 155 1 5 1678 1114 222 21 4 chr1 143381993 143382228 -53813204 + Lx4A LINE L1 6818 7056 -2 5 1678 22 0 0 0 chr1 143382230 143382252 -53813180 + AT_rich Low_complexity Low_complexity 1 22 0 5 1678 25 21 0 59 chr1 143382735 143382786 -53812646 + AT_rich Low_complexity Low_complexity 1 48 0 5 1678 3014 76 2 5 chr1 143382828 143383226 -53812206 + MTB LTR MaLR 1 397 -3 5 1678 2595 232 69 25 chr1 143384009 143384477 -53810955 + L1_Mur2 LINE L1 621 1109 -5977 5 1678 1258 64 0 11 chr1 143384477 143384651 -53810781 - L1_Mus1 LINE L1 0 6567 6396 5 1678 4295 162 22 11 chr1 143384651 143385574 -53809858 + L1_Mur2 LINE L1 1110 2053 -3824 5 1678 471 340 80 84 chr1 143385676 143386139 -53809293 + RLTR26 LTR ERVK 127 587 -55 5 1678 447 19 0 0 chr1 143386171 143386223 -53809209 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1678 9821 167 79 41 chr1 143386224 143386924 -53808508 + Lx4A LINE L1 2063 2862 -3015 5 1678 666 47 0 0 chr1 143386924 143387010 -53808422 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1678 9821 167 79 41 chr1 143387010 143387656 -53807776 + Lx4A LINE L1 2863 3487 -2390 5 1678 231 36 0 0 chr1 143387656 143387684 -53807748 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1678 9821 167 79 41 chr1 143387684 143388638 -53806794 + Lx4A LINE L1 3488 4451 -1426 5 1678 1091 103 0 0 chr1 143388639 143388785 -53806647 + B1_Mus1 SINE Alu 2 147 -1 5 1678 759 112 0 0 chr1 143388790 143388906 -53806526 + (GGAA)n Simple_repeat Simple_repeat 2 117 0 5 1678 336 149 0 129 chr1 143388906 143388991 -53806441 + Lx4A LINE L1 4439 4512 -1368 5 1678 1904 230 97 13 chr1 143389004 143389480 -53805952 - RLTR11A LTR ERVK -12 516 1 5 1678 5873 180 27 38 chr1 143389481 143391206 -53804226 + Lx4A LINE L1 4636 6419 -639 5 1678 806 160 14 0 chr1 143391217 143391361 -53804071 - RLTR44B LTR ERVK -303 146 1 5 1678 1386 278 63 80 chr1 143391466 143392184 -53803248 + RMER1B Other Other 44 619 -447 5 209 3775 78 4 10 chr1 143392444 143392964 -53802468 - L1Md_F2 LINE L1 -13 6569 6053 5 1679 556 200 187 6 chr1 143393166 143393343 -53802089 + B2_Mm2 SINE B2 1 205 -11 6 1679 441 0 0 0 chr1 143393343 143393392 -53802040 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 6 1679 248 335 52 26 chr1 143393392 143393407 -53802025 + B3A SINE B2 183 197 -1 6 1679 536 230 55 74 chr1 143395571 143395773 -53799659 - Lx7 LINE L1 -276 7420 7223 6 1679 857 28 9 0 chr1 143395800 143395908 -53799524 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 6 1679 2950 127 12 16 chr1 143395913 143396400 -53799032 - Lx3A LINE L1 -2 6979 6495 6 1679 1806 94 91 0 chr1 143396405 143396680 -53798752 + Lx3A LINE L1 6188 6487 -494 6 1679 5050 261 64 6 chr1 143396700 143398021 -53797411 - Lx7 LINE L1 -495 7201 5812 6 1679 4371 78 0 8 chr1 143398021 143398616 -53796816 + L1Md_F2 LINE L1 5992 6581 -1 6 1679 5050 261 64 6 chr1 143398616 143398709 -53796723 - Lx7 LINE L1 -1885 5811 5707 6 1679 2542 148 21 5 chr1 143398958 143399378 -53796054 + Lx3_Mus LINE L1 6583 7009 0 6 1679 25 0 0 0 chr1 143399407 143399432 -53796000 + AT_rich Low_complexity Low_complexity 1 25 0 6 1679 476 245 28 21 chr1 143399501 143399643 -53795789 + Lx2B LINE L1 6853 6995 -5 6 1679 2024 272 36 28 chr1 143400268 143400959 -53794473 + L1VL4 LINE L1 142 838 -5464 6 1679 784 71 0 0 chr1 143400948 143401047 -53794385 + L1Md_F3 LINE L1 5488 5586 -297 6 1679 8311 26 4 5 chr1 143401047 143402031 -53793401 + L1Md_F3 LINE L1 5587 6569 -15 6 1679 294 29 0 0 chr1 143402035 143402070 -53793362 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1679 12978 109 12 4 chr1 143402075 143404207 -53791225 + L1VL4 LINE L1 764 2913 -646 6 1679 6250 134 32 9 chr1 143404211 143405476 -53789956 + L1_Mus3 LINE L1 5346 6637 -1 6 1679 190 104 28 69 chr1 143405692 143405764 -53789668 + A-rich Low_complexity Low_complexity 2 70 0 6 1679 24 32 0 0 chr1 143405806 143405837 -53789595 + AT_rich Low_complexity Low_complexity 1 31 0 6 1679 794 122 114 0 chr1 143405846 143405969 -53789463 + B1_Mus1 SINE Alu 2 138 -10 6 1679 243 0 0 0 chr1 143405969 143405996 -53789436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1679 29 84 0 0 chr1 143406130 143406201 -53789231 + AT_rich Low_complexity Low_complexity 1 71 0 6 1679 6202 209 33 17 chr1 143406525 143407876 -53787556 - Lx2B LINE L1 -1 6999 5628 6 1679 211 167 42 0 chr1 143408014 143408062 -53787370 + (ATG)n Simple_repeat Simple_repeat 3 52 0 6 1679 243 88 0 0 chr1 143409835 143409869 -53785563 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1679 2574 243 145 9 chr1 143410477 143411461 -53783971 - Lx9 LINE L1 -5 7639 6522 6 1679 488 309 46 40 chr1 143412181 143412356 -53783076 + B3 SINE B2 2 177 -18 6 1679 347 157 71 0 chr1 143412764 143412834 -53782598 - Lx4B LINE L1 -1042 6016 5942 6 1679 1822 253 45 6 chr1 143412829 143413298 -53782134 + Lx4B LINE L1 6045 6531 -527 6 1679 7393 170 59 18 chr1 143413296 143414794 -53780638 + Lx4A LINE L1 5238 6817 -241 6 1679 2849 52 2 72 chr1 143414794 143415211 -53780221 - RLTR10 LTR ERVK -2 388 1 6 1679 7393 183 32 22 chr1 143415211 143415454 -53779978 + Lx4A LINE L1 6818 7056 -2 6 1679 244 361 0 0 chr1 143415536 143415633 -53779799 + L1M2 LINE L1 5667 5763 -528 6 1679 36 0 0 0 chr1 143415655 143415691 -53779741 + AT_rich Low_complexity Low_complexity 1 36 0 6 1679 327 177 0 0 chr1 143416099 143416161 -53779271 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1679 3470 154 27 60 chr1 143416385 143417049 -53778383 - RLTR26 LTR ERVK 0 642 1 6 1679 224 0 40 80 chr1 143417107 143417157 -53778275 + (TTTTTG)n Simple_repeat Simple_repeat 3 50 0 6 1679 27 0 0 0 chr1 143418538 143418565 -53776867 + AT_rich Low_complexity Low_complexity 1 27 0 6 1679 213 159 0 22 chr1 143419225 143419270 -53776162 + T-rich Low_complexity Low_complexity 2 45 0 6 1679 327 291 26 16 chr1 143419621 143419784 -53775648 - L1M2 LINE L1 -1030 5110 4936 6 1679 1434 232 81 74 chr1 143419805 143420289 -53775143 - RLTR31A_Mm LTR ERVK -97 487 1 6 1679 237 345 9 0 chr1 143420339 143420452 -53774980 - L1M2 LINE L1 -1271 4869 4756 6 1679 436 338 128 8 chr1 143420466 143420708 -53774724 - L1M2 LINE L1 -2236 3907 3637 6 1679 405 0 0 0 chr1 143421459 143421504 -53773928 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 6 1679 315 0 0 0 chr1 143421504 143421539 -53773893 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1679 557 245 7 0 chr1 143421729 143421884 -53773548 + CT-rich Low_complexity Low_complexity 2 157 0 6 1679 1022 109 0 0 chr1 143421891 143422038 -53773394 - B1_Mus1 SINE Alu 0 148 2 6 1679 26 30 0 0 chr1 143422083 143422116 -53773316 + AT_rich Low_complexity Low_complexity 1 33 0 6 1679 342 289 148 39 chr1 143424341 143424496 -53770936 - B4 SINE B4 -14 278 107 6 1679 974 276 37 144 chr1 143425970 143426372 -53769060 - Lx7 LINE L1 -11 7449 7091 6 1679 714 288 29 0 chr1 143426609 143426814 -53768618 + B3 SINE B2 4 214 -2 6 1679 5807 145 53 21 chr1 143426870 143428060 -53767372 - L1_Mus4 LINE L1 0 6636 5411 6 1679 4196 173 5 5 chr1 143428064 143428855 -53766577 + L1_Mur2 LINE L1 4643 5433 -444 6 1679 627 14 0 0 chr1 143430596 143430668 -53764764 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1679 1420 181 41 10 chr1 143430676 143430967 -53764465 - Lx3A LINE L1 -3 6978 6679 6 1679 1028 178 147 18 chr1 143430968 143431066 -53764366 - RMER6D LTR ERVK -474 246 151 6 1679 513 0 0 0 chr1 143431066 143431123 -53764309 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1679 1028 178 147 18 chr1 143431123 143431242 -53764190 - RMER6D LTR ERVK -570 150 2 6 1679 2069 224 112 46 chr1 143431242 143432196 -53763236 - Lx7 LINE L1 -1498 6198 5198 6 1679 809 208 169 55 chr1 143434585 143434952 -53760480 - RLTR9E LTR ERVK 0 409 1 6 1679 453 70 26 66 chr1 143434954 143435030 -53760402 - ETnERV2-int LTR ERVK -3 7403 7331 6 1679 729 229 259 42 chr1 143435030 143435352 -53760080 - RLTR13D6 LTR ERVK -362 540 160 6 1679 14707 112 12 26 chr1 143435352 143437507 -53757925 - ETnERV2-int LTR ERVK -202 7204 5082 6 1679 12943 79 5 1 chr1 143437507 143439253 -53756179 - L1Md_F2 LINE L1 -505 5378 3625 6 1679 875 121 23 8 chr1 143439240 143439373 -53756059 + L1Md_F2 LINE L1 5452 5586 -297 6 1679 7387 80 2 6 chr1 143439374 143440373 -53755059 + L1Md_F2 LINE L1 5588 6582 0 6 1679 7331 234 49 16 chr1 143440393 143442816 -53752616 - ETnERV2-int LTR ERVK -2315 5091 1790 6 1679 10590 153 4 8 chr1 143443054 143444716 -53750716 - ETnERV2-int LTR ERVK -1658 1656 2 6 1679 938 218 168 36 chr1 143444717 143445074 -53750358 - RLTR9E LTR ERVK 0 409 6 6 1679 6720 183 44 13 chr1 143445109 143446623 -53748809 + Lx4B LINE L1 5491 7057 -1 6 1679 567 0 0 0 chr1 143446693 143446756 -53748676 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 6 1679 508 301 47 47 chr1 143446763 143446976 -53748456 + B3 SINE B2 3 215 -1 6 1679 27 62 0 0 chr1 143447673 143447721 -53747711 + AT_rich Low_complexity Low_complexity 1 48 0 6 1679 4356 148 10 7 chr1 143447724 143448440 -53746992 - Lx3B LINE L1 -6 6967 6250 6 1679 3132 138 28 0 chr1 143448440 143448948 -53746484 - Lx3B LINE L1 -544 6429 5908 6 1679 524 351 9 35 chr1 143448983 143449213 -53746219 + ID_B1 SINE B4 1 224 0 6 1679 204 40 0 0 chr1 143449315 143449340 -53746092 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1679 38390 50 12 3 chr1 143449340 143455599 -53739833 - L1Md_T LINE L1 0 6582 307 6 1679 267 350 8 8 chr1 143455649 143455773 -53739659 - Lx6 LINE L1 -110 7350 7227 6 1679 221 91 45 0 chr1 143455773 143455817 -53739615 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 6 1679 2326 257 64 19 chr1 143455817 143455921 -53739511 - Lx6 LINE L1 -225 7235 7123 6 1679 546 108 0 0 chr1 143455921 143456004 -53739428 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1679 2326 257 64 19 chr1 143456004 143456364 -53739068 - Lx6 LINE L1 -338 7122 6741 6 1679 555 16 0 0 chr1 143456364 143456428 -53739004 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1679 2326 257 64 19 chr1 143456428 143456605 -53738827 - Lx6 LINE L1 -720 6740 6565 6 1679 25 0 0 0 chr1 143456631 143456656 -53738776 + AT_rich Low_complexity Low_complexity 1 25 0 6 1679 200 143 24 0 chr1 143457075 143457117 -53738315 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 6 1679 1101 66 0 0 chr1 143457189 143457326 -53738106 + B1_Mm SINE Alu 2 138 -9 6 1679 243 0 0 0 chr1 143457326 143457353 -53738079 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1679 201 121 0 0 chr1 143458461 143458494 -53736938 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1679 937 287 21 0 chr1 143458835 143459072 -53736360 + MTE2b LTR MaLR 7 248 -131 6 1679 1718 241 77 43 chr1 143459079 143459586 -53735846 - RMER19C LTR ERVK 0 611 88 6 1679 321 367 101 40 chr1 143459722 143459749 -53735683 + MTE-int LTR MaLR 1 27 -1553 6 1679 278 0 54 0 chr1 143459749 143459786 -53735646 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1679 321 367 101 40 chr1 143459786 143459985 -53735447 + MTE-int LTR MaLR 28 240 -1340 6 1679 243 88 0 0 chr1 143460028 143460062 -53735370 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1679 716 253 84 42 chr1 143460078 143460317 -53735115 - Lx6 LINE L1 0 7460 7212 6 1679 353 353 184 39 chr1 143460321 143460657 -53734775 + MTE-int LTR MaLR 302 686 -894 6 1679 1391 338 96 18 chr1 143460705 143461322 -53734110 + MTE-int LTR MaLR 745 1409 -171 6 1679 399 83 0 0 chr1 143461330 143461390 -53734042 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1679 641 63 11 0 chr1 143461571 143461666 -53733766 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1679 841 328 47 52 chr1 143461678 143462231 -53733201 - Lx9 LINE L1 -220 7424 6875 6 1679 27 29 0 0 chr1 143463306 143463340 -53732092 + AT_rich Low_complexity Low_complexity 1 34 0 6 1679 6936 94 6 4 chr1 143463341 143464475 -53730957 - L1Md_F2 LINE L1 -1 6581 5447 6 1679 10422 62 8 2 chr1 143464470 143466596 -53728836 - L1Md_F2 LINE L1 -2 6580 4440 6 1679 25386 70 1 1 chr1 143466599 143470663 -53724769 - L1Md_F2 LINE L1 0 6582 2520 6 1679 851 189 0 7 chr1 143470655 143470809 -53724623 - L1VL1 LINE L1 -6269 153 1 6 1679 3361 63 7 0 chr1 143470816 143471244 -53724188 - L1_Mus1 LINE L1 -10 6557 6127 6 1679 1895 47 0 0 chr1 143471244 143471476 -53723956 + L1_Mus1 LINE L1 5867 6098 -469 6 1679 465 168 0 18 chr1 143471498 143471607 -53723825 - Lx3A LINE L1 -3 6978 6872 6 1679 587 196 36 16 chr1 143471724 143471865 -53723567 - B1_Mur3 SINE Alu 0 149 1 6 1679 1094 99 0 0 chr1 143472146 143472287 -53723145 + B1_Mus1 SINE Alu 2 142 -6 6 1679 189 107 0 0 chr1 143472289 143472317 -53723115 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1679 4428 166 21 0 chr1 143473381 143474188 -53721244 - L1_Mur2 LINE L1 -1113 4764 3941 6 1679 2470 48 13 3 chr1 143474191 143474504 -53720928 + L1_Mus1 LINE L1 6239 6554 -13 6 1679 654 13 0 0 chr1 143474507 143474582 -53720850 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1679 201 191 24 0 chr1 143475009 143475051 -53720381 + GA-rich Low_complexity Low_complexity 4 46 0 6 1679 275 113 57 0 chr1 143475051 143475104 -53720328 - L1_Mur2 LINE L1 -1927 3959 3904 6 1679 507 172 13 13 chr1 143475062 143475188 -53720244 + Lx LINE L1 6143 6244 -410 6 1679 2227 86 18 9 chr1 143475650 143476021 -53719411 + Lx LINE L1 5532 5905 -749 6 1679 1623 176 29 23 chr1 143476021 143476365 -53719067 + Lx LINE L1 6305 6650 -4 6 1679 251 57 0 28 chr1 143477541 143477577 -53717855 - Lx3_Mus LINE L1 -186 6823 6789 6 1679 873 121 12 54 chr1 143477582 143477748 -53717684 + Lx3_Mus LINE L1 6851 7009 0 6 1679 4373 164 88 1 chr1 143477981 143479103 -53716329 + L1_Mur2 LINE L1 385 1626 -4221 6 1679 1108 88 0 7 chr1 143479103 143479251 -53716181 + B1_Mus1 SINE Alu 2 148 0 7 1679 368 285 5 20 chr1 143479251 143479277 -53716155 + L1_Mur2 LINE L1 1627 1650 -4197 6 1679 293 211 0 26 chr1 143479279 143479357 -53716075 + A-rich Low_complexity Low_complexity 3 78 0 7 1679 6577 87 3 4 chr1 143479372 143480276 -53715156 + L1Md_F2 LINE L1 5680 6582 0 7 1679 261 0 0 0 chr1 143480305 143480334 -53715098 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7 1679 276 53 0 0 chr1 143480407 143480445 -53714987 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1679 801 177 0 0 chr1 143480449 143480607 -53714825 + L1_Mur2 LINE L1 1615 1772 -4105 7 1679 28 29 0 0 chr1 143480648 143480683 -53714749 + AT_rich Low_complexity Low_complexity 1 35 0 7 1679 1573 123 23 11 chr1 143480683 143480947 -53714485 - Lx3A LINE L1 -7 6974 6708 7 1679 32 0 0 0 chr1 143481132 143481164 -53714268 + AT_rich Low_complexity Low_complexity 1 32 0 7 1679 1073 293 99 30 chr1 143482500 143483141 -53712291 - MTE-int LTR MaLR -825 755 2 7 1679 333 14 86 14 chr1 143483189 143483259 -53712173 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 7 1679 958 79 50 0 chr1 143483281 143483420 -53712012 - B1_Mm SINE Alu 0 147 2 7 1679 530 299 14 21 chr1 143483520 143483660 -53711772 + RSINE1 SINE B4 2 140 -25 7 1679 1495 270 108 12 chr1 143483731 143484195 -53711237 + MTE-int LTR MaLR 804 1383 -197 7 1679 835 67 0 0 chr1 143484195 143484315 -53711117 + MusHAL1 LINE L1 72 191 -2521 7 1679 2807 93 24 12 chr1 143484318 143484743 -53710689 + L1Md_F2 LINE L1 6153 6582 0 7 1679 1369 140 0 49 chr1 143484742 143484867 -53710565 + Lx LINE L1 6417 6535 -119 7 1679 2377 91 96 3 chr1 143484867 143485243 -53710189 - IAPLTR2a LTR ERVK 0 411 1 7 1679 1369 140 0 49 chr1 143485243 143485364 -53710068 + Lx LINE L1 6536 6651 -3 7 1679 667 313 0 22 chr1 143485408 143485630 -53709802 + Lx8 LINE L1 6921 7137 -336 7 1679 272 291 0 0 chr1 143485798 143485853 -53709579 + Lx8 LINE L1 7250 7304 -169 7 1679 365 195 0 12 chr1 143486160 143486243 -53709189 - ORR1A4 LTR MaLR -247 82 1 7 1679 236 179 125 0 chr1 143486363 143486419 -53709013 - RMER6D LTR ERVK -652 68 6 7 1679 274 338 75 14 chr1 143486434 143486581 -53708851 - B4 SINE B4 -128 164 9 7 1679 287 293 109 15 chr1 143486588 143486928 -53708504 + L1M2 LINE L1 5049 5419 -461 7 1679 304 251 54 49 chr1 143487397 143487572 -53707860 - Lx4B LINE L1 0 7058 6834 7 1679 267 31 0 0 chr1 143488484 143488516 -53706916 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1679 324 19 57 0 chr1 143488516 143488568 -53706864 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1679 1180 139 84 13 chr1 143488590 143488707 -53706725 - Lx LINE L1 -2 6652 6538 7 1679 207 0 0 0 chr1 143488707 143488730 -53706702 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 7 1679 1180 139 84 13 chr1 143488730 143488838 -53706594 - Lx LINE L1 -117 6537 6413 7 1679 366 353 17 0 chr1 143488864 143488980 -53706452 + B3A SINE B2 22 139 -59 7 1679 21 0 0 0 chr1 143489671 143489692 -53705740 + AT_rich Low_complexity Low_complexity 1 21 0 7 1679 224 207 17 17 chr1 143489846 143489905 -53705527 + (TTTA)n Simple_repeat Simple_repeat 4 62 0 7 1679 261 0 0 0 chr1 143490041 143490070 -53705362 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1679 302 28 0 0 chr1 143490070 143490106 -53705326 + HAL1-3A_ME LINE L1 1976 2011 -847 7 1679 602 60 12 0 chr1 143490107 143490190 -53705242 + (TA)n Simple_repeat Simple_repeat 1 84 0 7 1679 364 312 141 73 chr1 143490749 143491119 -53704313 - Kanga1 DNA Tc2 -1208 537 143 7 1679 1042 78 13 0 chr1 143491525 143491679 -53703753 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 7 1679 507 134 0 0 chr1 143491681 143491763 -53703669 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 1679 233 296 0 27 chr1 143491766 143491839 -53703593 + CT-rich Low_complexity Low_complexity 2 72 0 7 1679 365 332 135 26 chr1 143492586 143492788 -53702644 + L1M4 LINE L1 4074 4284 -1862 7 1679 1000 135 0 0 chr1 143492788 143492936 -53702496 - B1_Mus1 SINE Alu 0 148 1 7 1679 365 332 135 26 chr1 143492936 143493311 -53702121 + L1M4 LINE L1 4285 4714 -1432 7 1679 394 182 80 0 chr1 143493325 143493413 -53702019 - HAL1-3A_ME LINE L1 -788 2070 1976 7 1679 352 259 0 0 chr1 143493414 143493499 -53701933 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 1679 327 49 0 0 chr1 143494218 143494259 -53701173 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1679 204 163 0 0 chr1 143494269 143494312 -53701120 + GA-rich Low_complexity Low_complexity 1 43 0 7 1679 3370 148 27 0 chr1 143495053 143495613 -53699819 + Lx LINE L1 6077 6651 -3 7 1679 7498 76 2 4 chr1 143495678 143496725 -53698707 - L1Md_F2 LINE L1 -2 6580 5537 7 1679 2775 104 19 0 chr1 143496722 143497036 -53698396 + L1_Mm LINE L1 3006 3320 -2563 7 1679 3349 28 0 0 chr1 143497036 143497430 -53698002 + L1Md_A LINE L1 6189 6582 0 7 1679 2775 104 19 0 chr1 143497430 143497547 -53697885 + L1_Mm LINE L1 3321 3443 -2440 7 1679 1793 160 13 3 chr1 143497748 143498062 -53697370 + Lx2 LINE L1 6679 6995 -2 7 1679 578 302 137 25 chr1 143498530 143498931 -53696501 + RMER5 LTR ERV1 50 495 -39 7 1679 180 253 25 62 chr1 143499202 143499282 -53696150 - L3 LINE CR1 -1601 2888 2812 7 1679 603 27 0 0 chr1 143499531 143499604 -53695828 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1679 480 303 51 47 chr1 143499736 143499992 -53695440 + RMER5 LTR ERV1 203 459 -75 7 1679 341 256 87 43 chr1 143501569 143501753 -53693679 + L1MD3 LINE L1 7077 7268 -727 1 1679 516 274 161 0 chr1 143501854 143502040 -53693392 - B3 SINE B2 0 216 1 2 1679 21 89 0 0 chr1 143502045 143502101 -53693331 + AT_rich Low_complexity Low_complexity 1 56 0 3 1679 207 0 0 0 chr1 143502980 143503003 -53692429 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1679 485 286 49 84 chr1 143503609 143503814 -53691618 - RMER2 LTR ERV1 -27 540 344 5 1679 2384 89 6 22 chr1 143503814 143503993 -53691439 - BGLII LTR ERVK 0 421 245 6 1679 678 25 0 0 chr1 143503993 143504073 -53691359 + (TCTCCC)n Simple_repeat Simple_repeat 5 84 0 7 1679 2384 111 5 34 chr1 143504073 143504272 -53691160 - BGLII LTR ERVK -177 244 54 6 1679 1109 199 139 42 chr1 143504355 143504664 -53690768 - RMER2 LTR ERV1 -227 340 2 5 1679 288 167 0 0 chr1 143504902 143504950 -53690482 + Lx4A LINE L1 6163 6210 -848 8 1679 1013 169 97 0 chr1 143504953 143505148 -53690284 - Lx4A LINE L1 -246 6812 6599 9 1679 1536 161 17 2 chr1 143505142 143505550 -53689882 + L1_Mur2 LINE L1 1100 1513 -4364 1 1679 22 0 0 0 chr1 143506043 143506065 -53689367 + AT_rich Low_complexity Low_complexity 1 22 0 1 1679 13278 181 47 27 chr1 143506719 143509030 -53686402 + L1_Mur2 LINE L1 1508 3875 -2002 1 1679 441 0 0 0 chr1 143509030 143509079 -53686353 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1679 13278 181 47 27 chr1 143509079 143509550 -53685882 + L1_Mur2 LINE L1 3876 4356 -1521 1 1679 2691 153 75 60 chr1 143509550 143510099 -53685333 - RLTR31B_Mm LTR ERVK 0 557 1 1 1679 13278 181 47 27 chr1 143510099 143510378 -53685054 + L1_Mur2 LINE L1 4357 4632 -1245 1 1679 402 176 0 0 chr1 143510378 143510463 -53684969 + GA-rich Low_complexity Low_complexity 1 85 0 1 1679 516 175 0 40 chr1 143510463 143510564 -53684868 + L1_Mur2 LINE L1 4624 4720 -1157 1 1679 2039 256 112 2 chr1 143510573 143511179 -53684253 + Lx5 LINE L1 5588 6260 -790 1 1679 411 21 0 0 chr1 143511409 143511457 -53683975 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1 1679 3535 236 34 8 chr1 143511749 143512519 -53682913 + Lx5 LINE L1 6250 7039 -11 1 1679 21 36 0 0 chr1 143512658 143512686 -53682746 + AT_rich Low_complexity Low_complexity 1 28 0 1 1679 522 31 0 0 chr1 143512714 143512778 -53682654 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1679 21 0 0 0 chr1 143513949 143513970 -53681462 + AT_rich Low_complexity Low_complexity 1 21 0 1 1679 615 162 0 0 chr1 143514088 143514187 -53681245 + MTC LTR MaLR 199 297 -124 2 1679 2078 192 34 75 chr1 143514960 143515581 -53679851 + RMER6D LTR ERVK 52 635 -55 2 1679 522 235 0 0 chr1 143515590 143515692 -53679740 + MurERV4-int LTR ERVK 1633 1734 -1443 2 1679 846 261 123 19 chr1 143515784 143516108 -53679324 + MurERV4-int LTR ERVK 2100 2457 -6502 2 1679 1275 187 80 0 chr1 143516125 143516387 -53679045 + Lx2 LINE L1 6715 6997 0 2 1679 732 258 16 0 chr1 143516439 143516625 -53678807 + MurERV4-int LTR ERVK 3044 3232 -2028 2 1679 243 79 0 0 chr1 143516626 143516664 -53678768 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1679 1696 202 96 7 chr1 143516693 143517249 -53678183 - RMER6A LTR ERVK 0 690 6 2 1679 1664 244 45 8 chr1 143517253 143517681 -53677751 + MurERV4-int LTR ERVK 3263 3705 -1555 2 1679 221 0 35 0 chr1 143517681 143517710 -53677722 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1679 1664 244 45 8 chr1 143517710 143517772 -53677660 + MurERV4-int LTR ERVK 3706 3770 -1490 2 1679 844 241 64 0 chr1 143517787 143518007 -53677425 - MurERV4-int LTR ERVK -800 4460 4227 2 1679 2227 234 46 10 chr1 143518065 143518873 -53676559 + MurERV4-int LTR ERVK 4419 5136 -124 2 1679 326 164 49 0 chr1 143518856 143518917 -53676515 + MurERV4-int LTR ERVK 2976 3039 -138 2 1679 2331 133 12 42 chr1 143518963 143519371 -53676061 - MTB_Mm LTR MaLR -11 396 1 2 1679 385 141 14 0 chr1 143519373 143519444 -53675988 + MurERV4-int LTR ERVK 3106 3177 0 2 1679 2814 206 78 10 chr1 143519444 143520115 -53675317 + RMER6D LTR ERVK 1 716 -4 2 1679 266 386 66 55 chr1 143520361 143520542 -53674890 - B4 SINE B4 -12 280 98 2 1679 339 25 0 0 chr1 143520600 143520640 -53674792 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 1679 22 56 0 0 chr1 143520850 143520886 -53674546 + AT_rich Low_complexity Low_complexity 1 36 0 3 1679 23 0 0 0 chr1 143521901 143521924 -53673508 + AT_rich Low_complexity Low_complexity 1 23 0 3 1679 1263 136 25 25 chr1 143521924 143522166 -53673266 - Lx2A1 LINE L1 -4 7004 6763 3 1679 279 0 0 0 chr1 143522513 143522544 -53672888 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 3 1679 1044 65 43 0 chr1 143522545 143522684 -53672748 - B1_Mus1 SINE Alu -3 145 1 3 1679 270 0 0 0 chr1 143523071 143523101 -53672331 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1679 852 10 0 0 chr1 143523598 143523695 -53671737 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 209 414 317 12 17 chr1 143523778 143523967 -53671465 - L1_Rod LINE L1 -1957 4189 3994 3 1680 285 179 0 18 chr1 143524682 143524739 -53670693 + MTD LTR MaLR 343 398 -21 3 1680 21 0 0 0 chr1 143524954 143524975 -53670457 + AT_rich Low_complexity Low_complexity 1 21 0 3 1680 1210 48 7 0 chr1 143524980 143525127 -53670305 - B1_Mus1 SINE Alu 0 148 1 4 1680 1306 52 6 0 chr1 143525171 143525343 -53670089 - L1_Mus1 LINE L1 0 6567 6395 4 1680 261 0 0 0 chr1 143525352 143525381 -53670051 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1680 25 83 0 0 chr1 143525661 143525721 -53669711 + AT_rich Low_complexity Low_complexity 1 60 0 4 1680 324 167 0 70 chr1 143525723 143525794 -53669638 - HAL1-3A_ME LINE L1 -817 2041 1976 4 1680 225 180 0 0 chr1 143525794 143525844 -53669588 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1680 1626 286 41 50 chr1 143526034 143526670 -53668762 - Lx7 LINE L1 -194 7502 6873 4 1680 7455 72 14 2 chr1 143526708 143527681 -53667751 - L1Md_F2 LINE L1 -10 6572 5588 4 1680 4338 50 11 0 chr1 143527699 143528241 -53667191 - L1Md_F2 LINE L1 0 6582 6035 4 1680 818 103 0 0 chr1 143528241 143528349 -53667083 + L1_Mm LINE L1 5534 5641 -242 4 1680 347 320 98 35 chr1 143528347 143528868 -53666564 - L1_Mur3 LINE L1 -1611 4269 3716 5 1680 231 235 62 0 chr1 143528873 143528954 -53666478 - L1MD LINE L1 -2464 3682 3597 5 1680 435 38 0 0 chr1 143528978 143529031 -53666401 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 1680 302 275 33 20 chr1 143529103 143529278 -53666154 - L1_Mur3 LINE L1 -2454 3423 3240 5 1680 234 0 0 0 chr1 143529290 143529316 -53666116 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1680 1013 76 0 8 chr1 143529316 143529448 -53665984 - B1_Mus1 SINE Alu -13 135 5 5 1680 450 0 0 0 chr1 143529448 143529498 -53665934 + (TTTTC)n Simple_repeat Simple_repeat 2 51 0 5 1680 1844 231 87 67 chr1 143529558 143530038 -53665394 + RLTR20B3 LTR ERVK 1 483 -94 5 1680 186 43 0 0 chr1 143530038 143530061 -53665371 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1680 1844 231 87 67 chr1 143530061 143530133 -53665299 + RLTR20B3 LTR ERVK 484 563 -14 5 1680 21 71 0 0 chr1 143530905 143530947 -53664485 + AT_rich Low_complexity Low_complexity 1 42 0 5 1680 483 160 0 0 chr1 143531653 143531747 -53663685 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1680 186 103 0 0 chr1 143532175 143532204 -53663228 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1680 471 93 0 23 chr1 143532214 143532302 -53663130 - L1Md_F3 LINE L1 -5 6579 6494 6 1680 4929 115 30 25 chr1 143532314 143533111 -53662321 - Lx3A LINE L1 -8 6973 6173 6 1680 2849 198 50 34 chr1 143533113 143533540 -53661892 - RMER17A LTR ERVK -3 748 305 6 1680 240 35 0 0 chr1 143533540 143533569 -53661863 + (GGGGA)n Simple_repeat Simple_repeat 4 32 0 6 1680 2849 198 50 34 chr1 143533569 143533877 -53661555 - RMER17A LTR ERVK -447 304 1 6 1680 3371 137 37 7 chr1 143533895 143534468 -53660964 - Lx3A LINE L1 -803 6178 5589 6 1680 323 307 43 34 chr1 143534539 143534748 -53660684 - Lx7 LINE L1 -16 7680 7470 6 1680 414 0 0 0 chr1 143534801 143534847 -53660585 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1680 1250 238 31 9 chr1 143534847 143535165 -53660267 + Lx9 LINE L1 7105 7429 -215 6 1680 465 232 16 28 chr1 143535311 143535493 -53659939 + Lx9 LINE L1 7465 7644 0 6 1680 24 32 0 0 chr1 143536119 143536150 -53659282 + AT_rich Low_complexity Low_complexity 1 31 0 6 1680 3753 46 6 4 chr1 143536287 143536764 -53658668 + L1Md_F3 LINE L1 6093 6570 -14 6 1680 21 0 0 0 chr1 143536812 143536833 -53658599 + AT_rich Low_complexity Low_complexity 1 21 0 7 1680 518 316 8 0 chr1 143536953 143537086 -53658346 - RSINE1 SINE B4 -29 136 3 7 1680 25 0 0 0 chr1 143537108 143537133 -53658299 + AT_rich Low_complexity Low_complexity 1 25 0 7 1680 1066 314 60 29 chr1 143537229 143537748 -53657684 - Lx6 LINE L1 -356 7104 6570 7 1680 1639 31 0 0 chr1 143537967 143538159 -53657273 + B2_Mm1t SINE B2 1 192 -1 7 1680 1161 118 0 0 chr1 143539564 143539742 -53655690 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 1680 205 27 0 75 chr1 143540139 143540179 -53655253 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 7 1680 273 286 68 51 chr1 143540179 143540297 -53655135 - PB1D7 SINE Alu 0 120 1 7 1680 327 331 31 0 chr1 143540380 143540507 -53654925 - L2a LINE L2 -173 3253 3123 7 1680 256 333 0 44 chr1 143540694 143540785 -53654647 + B4 SINE B4 10 96 -196 7 1680 483 81 0 0 chr1 143540958 143541032 -53654400 + L1_Mus2 LINE L1 6493 6566 0 8 1680 25 75 0 0 chr1 143541266 143541319 -53654113 + AT_rich Low_complexity Low_complexity 1 53 0 8 1680 280 310 65 25 chr1 143541418 143541693 -53653739 + L1M2 LINE L1 2123 2408 -3735 8 1680 4667 184 37 21 chr1 143541807 143542157 -53653275 + Lx4B LINE L1 6049 6411 -647 8 1680 3419 141 25 9 chr1 143542157 143542714 -53652718 - RMER2 LTR ERV1 -1 566 1 8 1680 4667 184 37 21 chr1 143542714 143543353 -53652079 + Lx4B LINE L1 6412 7054 -4 8 1680 3384 20 10 0 chr1 143543392 143543784 -53651648 - MTA_Mm LTR MaLR 0 396 1 8 1680 270 0 0 0 chr1 143543880 143543910 -53651522 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 1680 261 0 0 0 chr1 143544492 143544521 -53650911 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1680 6778 132 7 19 chr1 143544550 143544563 -53650869 - Lx LINE L1 -2 6652 6643 8 1680 705 56 0 0 chr1 143544563 143544653 -53650779 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 8 1680 6778 135 6 18 chr1 143544653 143545852 -53649580 - Lx LINE L1 -12 6642 5457 8 1680 2357 86 3 19 chr1 143545850 143546216 -53649216 + MusHAL1 LINE L1 1604 1963 -749 9 1680 703 332 128 36 chr1 143546480 143546559 -53648873 + L1M2 LINE L1 2400 2479 -3664 8 1680 342 0 0 0 chr1 143546559 143546597 -53648835 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1680 703 332 128 36 chr1 143546597 143546999 -53648433 + L1M2 LINE L1 2480 2940 -3203 8 1680 240 35 0 0 chr1 143546999 143547028 -53648404 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 9 1680 703 332 128 36 chr1 143547028 143547472 -53647960 + L1M2 LINE L1 2941 3412 -2731 8 1680 414 354 35 20 chr1 143547648 143547850 -53647582 + B3 SINE B2 6 210 -6 9 1680 26 30 0 0 chr1 143547908 143547941 -53647491 + AT_rich Low_complexity Low_complexity 1 33 0 9 1680 2243 187 156 8 chr1 143550544 143551024 -53644408 - RMER13A LTR ERVK -309 551 1 9 1680 2085 244 30 6 chr1 143552134 143552748 -53642684 - Lx4B LINE L1 -2 6998 6355 9 1680 830 256 43 4 chr1 143553529 143553764 -53641668 - ORR1B1-int LTR MaLR -1241 268 25 9 1680 283 317 62 47 chr1 143553918 143554259 -53641173 + L1M2 LINE L1 3231 3606 -2537 9 1680 3030 171 91 54 chr1 143554285 143554954 -53640478 - L1_Mur2 LINE L1 -1167 4710 3979 9 1680 419 74 0 14 chr1 143554954 143555023 -53640409 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 1 1680 3030 171 91 54 chr1 143555023 143555125 -53640307 - L1_Mur2 LINE L1 -1899 3978 3911 9 1680 703 243 11 11 chr1 143555110 143555293 -53640139 + L1_Mur1 LINE L1 4934 5116 -770 1 1680 4800 102 4 17 chr1 143555290 143555998 -53639434 - L1Md_Gf LINE L1 -5502 1020 322 1 1680 12177 66 3 1 chr1 143555996 143557584 -53637848 + L1Md_F2 LINE L1 3996 5586 -297 1 1680 7703 58 3 4 chr1 143557584 143558568 -53636864 + L1Md_F2 LINE L1 5587 6569 -13 1 1680 6419 145 58 23 chr1 143558589 143559992 -53635440 + L1_Mus2 LINE L1 5099 6560 -6 1 1680 1938 186 56 17 chr1 143559999 143560410 -53635022 + L1_Mur1 LINE L1 5349 5775 -111 1 1680 24 53 0 0 chr1 143560620 143560658 -53634774 + AT_rich Low_complexity Low_complexity 1 38 0 1 1680 316 239 0 0 chr1 143562243 143562314 -53633118 + Lx9 LINE L1 7305 7375 -269 1 1680 325 168 112 26 chr1 143562484 143562600 -53632832 + Lx9 LINE L1 7492 7617 -27 1 1680 26 0 0 0 chr1 143562823 143562849 -53632583 + AT_rich Low_complexity Low_complexity 1 26 0 1 1680 1625 112 41 11 chr1 143564191 143564461 -53630971 + Lx3A LINE L1 6697 6974 -7 1 1680 381 22 0 0 chr1 143564486 143564532 -53630900 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1680 566 14 41 0 chr1 143564532 143564605 -53630827 + (GAAAA)n Simple_repeat Simple_repeat 5 80 0 1 1680 2042 79 7 0 chr1 143564608 143564887 -53630545 - L1_Mus1 LINE L1 -388 6179 5899 1 1680 3153 67 2 0 chr1 143564888 143565291 -53630141 + L1_Mus1 LINE L1 6164 6567 0 1 1680 285 240 20 0 chr1 143565315 143565415 -53630017 + L1_Rod LINE L1 2580 2681 -3166 1 1680 23 78 0 0 chr1 143565473 143565524 -53629908 + AT_rich Low_complexity Low_complexity 1 51 0 1 1680 554 268 47 16 chr1 143566035 143566164 -53629268 - ETnERV2-int LTR ERVK -204 7202 7070 1 1680 270 321 49 0 chr1 143566212 143566293 -53629139 + B4A SINE B4 1 85 -207 1 1680 246 328 111 43 chr1 143566710 143567108 -53628324 + L1M2 LINE L1 4639 5063 -1080 1 1680 314 288 29 142 chr1 143567263 143567411 -53628021 + Lx9 LINE L1 7159 7285 -359 1 1680 1156 75 0 13 chr1 143567411 143567560 -53627872 - B1_Mus1 SINE Alu -1 147 1 1 1680 314 288 29 142 chr1 143567560 143567650 -53627782 + Lx9 LINE L1 7286 7370 -274 1 1680 1058 279 59 31 chr1 143567659 143567872 -53627560 + ORR1D1 LTR MaLR 10 235 -139 1 1680 282 56 0 0 chr1 143567872 143567908 -53627524 + (CCTG)n Simple_repeat Simple_repeat 4 39 0 1 1680 1058 279 59 31 chr1 143567908 143568049 -53627383 + ORR1D1 LTR MaLR 236 374 0 1 1680 344 274 18 0 chr1 143568052 143568165 -53627267 + Lx9 LINE L1 7369 7483 -161 1 1680 347 41 20 0 chr1 143568169 143568218 -53627214 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1680 1149 176 5 5 chr1 143568317 143568534 -53626898 - Lx2 LINE L1 -1 6996 6780 1 1680 351 0 0 0 chr1 143568757 143568796 -53626636 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1680 6828 135 21 21 chr1 143568832 143569947 -53625485 + Lx2 LINE L1 5881 6995 -2 1 1680 208 103 25 25 chr1 143569950 143569990 -53625442 + A-rich Low_complexity Low_complexity 1 40 0 1 1680 367 368 26 13 chr1 143570081 143570312 -53625120 - Lx7 LINE L1 -389 7307 7074 1 1680 495 318 41 33 chr1 143570313 143570557 -53624875 + Lx7 LINE L1 6568 6813 -883 1 1680 252 238 66 5 chr1 143571345 143571431 -53624001 - B4 SINE B4 -134 90 2 1 1680 506 86 12 0 chr1 143571606 143571687 -53623745 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1680 2799 38 0 3 chr1 143572523 143572864 -53622568 + L1Md_F2 LINE L1 6200 6539 -43 1 1680 465 19 0 0 chr1 143572864 143572918 -53622514 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1680 278 372 39 59 chr1 143572925 143573128 -53622304 + MLT1-int LTR MaLR 990 1188 -183 1 1680 2669 46 0 49 chr1 143573323 143573667 -53621765 + IAPLTR2b LTR ERVK 1 327 0 1 1680 693 0 0 0 chr1 143573856 143573933 -53621499 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 1 1680 1947 163 58 3 chr1 143573936 143574011 -53621421 - Lx LINE L1 -8 6646 6572 1 1680 186 43 0 0 chr1 143574011 143574034 -53621398 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 1 1680 1947 163 58 3 chr1 143574034 143574340 -53621092 - Lx LINE L1 -83 6571 6246 1 1680 540 408 17 6 chr1 143574342 143574697 -53620735 + Lx9 LINE L1 6467 6825 -819 1 1680 858 280 144 23 chr1 143576045 143576392 -53619040 + MTD LTR MaLR 18 406 -13 1 1680 227 370 20 20 chr1 143578033 143578135 -53617297 + PB1D7 SINE Alu 8 109 -11 1 1680 258 32 0 0 chr1 143578195 143578226 -53617206 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1680 292 311 28 37 chr1 143578248 143578355 -53617077 + Helitron3Na_Mam RC Helitron 105 210 -276 1 1680 1080 254 87 0 chr1 143578872 143579171 -53616261 - L1_Mur3 LINE L1 -959 4921 4597 1 1680 551 234 18 78 chr1 143579138 143579312 -53616120 - L1_Mur3 LINE L1 -3662 2218 2056 1 1680 189 74 0 0 chr1 143579312 143579339 -53616093 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1680 551 234 18 78 chr1 143579339 143579382 -53616050 - L1_Mur3 LINE L1 -3825 2055 2014 1 1680 1418 162 21 4 chr1 143579395 143579636 -53615796 - Lx2 LINE L1 -47 6950 6706 1 1680 501 215 90 7 chr1 143579637 143579782 -53615650 - L1_Mur3 LINE L1 -3868 2012 1856 1 1680 2281 284 37 61 chr1 143579771 143580121 -53615311 - L1_Mur3 LINE L1 -6739 989 675 1 1680 3321 122 50 9 chr1 143580121 143580657 -53614775 - L1_Mus4 LINE L1 0 6636 6079 1 1680 2281 273 40 40 chr1 143580657 143581740 -53613692 - L1_Mur3 LINE L1 -7047 681 18 1 1680 27 73 0 0 chr1 143581989 143582044 -53613388 + AT_rich Low_complexity Low_complexity 1 55 0 1 1680 38 22 0 0 chr1 143582074 143582119 -53613313 + AT_rich Low_complexity Low_complexity 1 45 0 1 1680 195 139 0 0 chr1 143582128 143582164 -53613268 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 1 1680 21 36 0 0 chr1 143583041 143583069 -53612363 + AT_rich Low_complexity Low_complexity 1 28 0 1 1680 395 180 0 135 chr1 143583234 143583359 -53612073 - RMER6C LTR ERVK -544 176 67 1 1680 2805 223 55 23 chr1 143583540 143583909 -53611523 + RMER6D LTR ERVK 1 367 -353 1 1680 312 27 0 0 chr1 143583909 143583946 -53611486 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1680 2805 223 55 23 chr1 143583946 143584273 -53611159 + RMER6D LTR ERVK 368 718 -2 1 1680 332 315 32 39 chr1 143584285 143584440 -53610992 - Lx9 LINE L1 -1171 6473 6320 1 1680 335 311 15 22 chr1 143584473 143584608 -53610824 + Lx9 LINE L1 7308 7441 -203 1 1680 336 297 86 54 chr1 143584603 143585023 -53610409 - Lx7 LINE L1 -1267 6206 5773 1 1680 282 319 41 20 chr1 143585095 143585242 -53610190 - L1_Mur1 LINE L1 -285 5601 5452 1 1680 353 281 38 32 chr1 143585256 143585414 -53610018 + RCHARR1 DNA MER1_type 467 625 -349 1 1680 751 284 62 28 chr1 143586471 143586826 -53608606 - Lx7 LINE L1 -1661 6035 5669 1 1680 1741 243 166 45 chr1 143586842 143587639 -53607793 - Lx7 LINE L1 -734 5146 4254 1 1680 32268 99 4 5 chr1 143587610 143592218 -53603214 - L1Md_F2 LINE L1 -1 6581 1978 1 1680 219 36 0 0 chr1 143592218 143592246 -53603186 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1680 32268 129 33 8 chr1 143592246 143594024 -53601408 - L1Md_F2 LINE L1 -3906 1977 150 1 1680 303 232 0 17 chr1 143594025 143594110 -53601322 - Lx7 LINE L1 -1581 4299 4217 1 1680 253 189 0 39 chr1 143594112 143594189 -53601243 + (TTTG)n Simple_repeat Simple_repeat 3 76 0 1 1680 688 184 14 0 chr1 143594305 143594446 -53600986 - Lx7 LINE L1 -1660 4220 4078 1 1680 29 28 0 0 chr1 143594448 143594484 -53600948 + AT_rich Low_complexity Low_complexity 1 36 0 1 1680 37214 34 0 0 chr1 143594627 143599941 -53595491 - L1Md_T LINE L1 0 6585 1300 1 1680 7728 7 11 0 chr1 143599941 143600822 -53594610 + L1Md_T LINE L1 260 1247 -5480 1 1680 2016 239 90 82 chr1 143601164 143601260 -53594172 - Lx7 LINE L1 -1788 4092 4010 1 1680 1504 62 14 5 chr1 143601260 143601470 -53593962 - L1Md_F2 LINE L1 -1 6581 6370 1 1680 2016 239 90 82 chr1 143601470 143601613 -53593819 - Lx7 LINE L1 -1871 4009 3857 1 1680 189 0 0 0 chr1 143601613 143601634 -53593798 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1680 2016 239 90 82 chr1 143601634 143602431 -53593001 - Lx7 LINE L1 -2024 3856 3047 1 1680 282 242 106 30 chr1 143602465 143602597 -53592835 - Lx7 LINE L1 -2784 3096 2955 1 1680 2891 212 17 12 chr1 143602602 143603199 -53592233 - Lx4A LINE L1 -302 6756 6157 1 1680 2438 163 52 7 chr1 143603201 143603659 -53591773 - L1_Mur2 LINE L1 -252 5625 5147 1 1680 4471 158 30 6 chr1 143603657 143604489 -53590943 + L1_Mur2 LINE L1 3506 4357 -1520 1 1680 2756 224 35 26 chr1 143604489 143605287 -53590145 - Lx7 LINE L1 -2995 2885 2081 1 1680 579 102 0 0 chr1 143605296 143605384 -53590048 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1680 1451 239 96 6 chr1 143605424 143605779 -53589653 - Lx7 LINE L1 -4292 1588 1211 1 1680 6127 114 5 10 chr1 143605779 143606706 -53588726 - Lx3_Mus LINE L1 0 7009 6087 1 1680 1451 221 174 12 chr1 143606706 143607090 -53588342 - Lx7 LINE L1 -6518 1210 750 1 1680 6272 135 72 9 chr1 143607105 143608590 -53586842 + Lx LINE L1 5100 6653 -1 1 1680 1472 319 62 35 chr1 143608609 143608860 -53586572 - Lx7 LINE L1 -6979 749 484 1 1680 225 0 0 0 chr1 143608860 143608885 -53586547 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1680 1472 295 39 65 chr1 143608885 143609519 -53585913 - Lx7 LINE L1 -7052 676 22 1 1680 205 300 14 0 chr1 143610807 143610877 -53584555 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 1680 218 401 104 41 chr1 143611083 143611353 -53584079 - B4 SINE B4 0 292 6 1 1680 7213 158 17 2 chr1 143611931 143613171 -53582261 - Lx2 LINE L1 0 6997 5739 1 1680 2753 115 17 2 chr1 143613172 143613581 -53581851 - Lx3_Mus LINE L1 -5 7004 6590 1 1680 1049 194 0 43 chr1 143613581 143613791 -53581641 - L1_Mur2 LINE L1 -149 5734 5534 1 1680 566 282 0 0 chr1 143614436 143614567 -53580865 + ETnERV2-int LTR ERVK 6489 6619 -300 1 1680 489 314 12 12 chr1 143614567 143614587 -53580845 + RodERV21-int LTR ERV1 4450 4563 -428 1 1680 1899 234 25 5 chr1 143614821 143615228 -53580204 + ETnERV2-int LTR ERVK 6644 7058 -348 1 1680 408 250 32 57 chr1 143615404 143615561 -53579871 + RLTR43A LTR ERVK 206 358 -6 1 1680 2488 150 4 9 chr1 143615561 143616029 -53579403 - L1_Mur2 LINE L1 -353 5530 5059 1 1680 693 170 14 0 chr1 143616271 143616412 -53579020 - L1_Mur2 LINE L1 -771 5112 4970 1 1680 2339 196 32 15 chr1 143616404 143616923 -53578509 + L1_Mm LINE L1 4493 5045 -1098 1 1680 308 241 46 0 chr1 143617357 143617465 -53577967 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 1 1680 216 182 0 0 chr1 143617467 143617511 -53577921 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1680 207 139 0 0 chr1 143618355 143618391 -53577041 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1680 297 0 0 0 chr1 143619517 143619550 -53575882 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1680 219 185 0 18 chr1 143619755 143619810 -53575622 + A-rich Low_complexity Low_complexity 5 58 0 1 1680 21 57 0 0 chr1 143619985 143620020 -53575412 + AT_rich Low_complexity Low_complexity 1 35 0 1 1680 1111 215 151 37 chr1 143620030 143620541 -53574891 + L1_Mur3 LINE L1 1237 1805 -4075 1 1680 4862 231 74 47 chr1 143620547 143620790 -53574642 + L1_Mur3 LINE L1 2756 2993 -2887 1 1680 771 40 0 0 chr1 143620790 143620889 -53574543 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1680 4862 231 74 47 chr1 143620889 143621195 -53574237 + L1_Mur3 LINE L1 2994 3254 -2626 1 1680 330 26 0 0 chr1 143621195 143621234 -53574198 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1680 4862 231 74 47 chr1 143621234 143621278 -53574154 + L1_Mur3 LINE L1 3255 3318 -2562 1 1680 2144 172 28 5 chr1 143621278 143621670 -53573762 + Lx4A LINE L1 6655 7055 -3 1 1680 699 52 0 0 chr1 143621671 143621767 -53573665 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 1 1680 4862 231 74 47 chr1 143621767 143622865 -53572567 + L1_Mur3 LINE L1 3319 4495 -1385 1 1680 192 77 0 0 chr1 143622869 143622895 -53572537 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1680 3218 43 2 12 chr1 143623184 143623584 -53571848 + MTA_Mm LTR MaLR 1 396 0 1 1680 27 0 0 0 chr1 143623903 143623930 -53571502 + AT_rich Low_complexity Low_complexity 1 27 0 1 1680 202 73 24 24 chr1 143625041 143625083 -53570349 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1680 269 231 186 44 chr1 143625111 143625224 -53570208 - B1F SINE Alu -5 144 16 1 1680 6107 93 9 17 chr1 143626106 143626993 -53568439 + Lx3_Mus LINE L1 6121 7000 -9 1 1680 212 0 36 0 chr1 143626993 143627021 -53568411 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1680 2268 274 83 20 chr1 143627039 143628005 -53567427 + Lx9 LINE L1 4847 5903 -1741 2 1680 3281 33 8 0 chr1 143628201 143628599 -53566833 - L1Md_F2 LINE L1 0 6582 6182 2 1680 354 23 0 0 chr1 143631020 143631063 -53564369 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1680 305 47 23 0 chr1 143631063 143631106 -53564326 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1680 21 57 0 0 chr1 143631945 143631980 -53563452 + AT_rich Low_complexity Low_complexity 1 35 0 2 1680 1346 344 68 5 chr1 143632011 143632615 -53562817 + Lx8 LINE L1 6236 6877 -596 2 1680 25 0 0 0 chr1 143632616 143632641 -53562791 + AT_rich Low_complexity Low_complexity 1 25 0 2 1680 4583 87 32 6 chr1 143633587 143634243 -53561189 + L1_Mus3 LINE L1 5966 6638 0 2 1680 232 363 25 50 chr1 143634877 143634996 -53560436 - MER20 DNA MER1_type -5 214 99 2 1680 873 211 52 56 chr1 143634998 143635284 -53560148 - L1_Mur3 LINE L1 -1096 4784 4500 2 1680 2761 295 55 59 chr1 143635295 143636111 -53559321 + Lx6 LINE L1 6357 7171 -289 2 1680 5535 73 9 18 chr1 143636111 143636875 -53558557 + L1Md_F2 LINE L1 5826 6582 0 2 1680 2761 295 55 59 chr1 143636875 143637164 -53558268 + Lx6 LINE L1 7172 7458 -2 2 1680 390 363 73 58 chr1 143637895 143638155 -53557277 + MLT2F LTR ERVL 42 305 -358 2 1680 403 360 0 39 chr1 143639426 143639579 -53555853 + B4A SINE B4 146 292 0 2 1680 21 0 0 0 chr1 143640518 143640539 -53554893 + AT_rich Low_complexity Low_complexity 1 21 0 2 1680 382 69 0 0 chr1 143640546 143640604 -53554828 - Lx LINE L1 -7 6647 6590 2 1680 24 32 0 0 chr1 143641004 143641035 -53554397 + AT_rich Low_complexity Low_complexity 1 31 0 2 1680 5517 223 35 59 chr1 143642967 143643860 -53551572 - L1_Mur2 LINE L1 -2829 3048 2207 2 1680 3050 32 8 21 chr1 143643860 143644243 -53551189 - L1Md_F3 LINE L1 -14 6570 6193 2 1680 5517 223 35 59 chr1 143644243 143644389 -53551043 - L1_Mur2 LINE L1 -3671 2206 2058 2 1680 582 15 0 0 chr1 143644389 143644456 -53550976 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1680 5517 223 35 59 chr1 143644456 143645008 -53550424 - L1_Mur2 LINE L1 -3820 2057 1495 2 1680 574 271 98 11 chr1 143647268 143647533 -53547899 + Lx7 LINE L1 5849 6136 -1560 2 1680 4062 227 57 29 chr1 143647543 143647994 -53547438 - Lx5 LINE L1 -1 7049 6577 2 1680 3587 13 0 0 chr1 143647994 143648390 -53547042 - MTA_Mm LTR MaLR 0 396 1 2 1680 9131 34 3 2 chr1 143648390 143649487 -53545945 - MTA_Mm-int LTR MaLR 0 1098 1 2 1680 3568 15 0 0 chr1 143649487 143649883 -53545549 - MTA_Mm LTR MaLR 0 396 1 2 1680 4062 227 57 29 chr1 143649883 143650423 -53545009 - Lx5 LINE L1 -474 6576 6030 2 1680 3267 140 78 2 chr1 143650452 143651003 -53544429 - Lx2A1 LINE L1 0 7008 6416 2 1680 1864 202 5 65 chr1 143651005 143651439 -53543993 + Lx2A1 LINE L1 6020 6427 -581 2 1680 4647 247 45 33 chr1 143651463 143652707 -53542725 + Lx7 LINE L1 6311 7569 -127 2 1680 200 79 0 50 chr1 143652714 143652754 -53542678 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2 1680 50 18 0 0 chr1 143652877 143652934 -53542498 + AT_rich Low_complexity Low_complexity 1 57 0 2 26 6914 116 17 2 chr1 143653876 143655172 -53540260 - L1_Mus4 LINE L1 0 6636 5314 2 1681 6941 101 17 0 chr1 143655171 143656218 -53539214 - MusHAL1 LINE L1 -1469 1243 179 2 1681 282 261 90 24 chr1 143656222 143656434 -53538998 - Lx7 LINE L1 -115 7581 7356 2 1681 26 0 0 0 chr1 143656462 143656488 -53538944 + AT_rich Low_complexity Low_complexity 1 26 0 2 1681 21 0 0 0 chr1 143656531 143656552 -53538880 + AT_rich Low_complexity Low_complexity 1 21 0 2 1681 456 19 0 0 chr1 143656633 143656686 -53538746 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1681 311 149 64 18 chr1 143657415 143657524 -53537908 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1681 21 89 0 0 chr1 143657575 143657631 -53537801 + AT_rich Low_complexity Low_complexity 1 56 0 2 1681 428 292 58 66 chr1 143657668 143657925 -53537507 - RLTR40 LTR ERVK -311 506 252 2 1681 8231 167 40 8 chr1 143657945 143659573 -53535859 + Lx2B LINE L1 3601 5280 -606 2 1681 2126 144 34 11 chr1 143659571 143659928 -53535504 + Lx3B LINE L1 6544 6908 -65 2 1681 530 274 37 52 chr1 143660316 143660451 -53534981 - ETnERV2-int LTR ERVK -204 7202 7070 2 1681 395 122 40 0 chr1 143660452 143660526 -53534906 + Lx3A LINE L1 6905 6981 0 2 1681 5451 180 33 19 chr1 143660555 143661186 -53534246 + Lx2B LINE L1 5291 5926 -1074 2 1681 2478 52 48 18 chr1 143661186 143661522 -53533910 - ORR1A0 LTR MaLR 0 346 1 2 1681 5451 166 33 21 chr1 143661522 143661815 -53533617 + Lx2B LINE L1 5927 6210 -790 2 1681 1644 105 0 0 chr1 143661815 143662044 -53533388 + L1_Mus1 LINE L1 6339 6567 0 2 1681 5451 166 33 21 chr1 143662044 143662429 -53533003 + Lx2B LINE L1 6211 6614 -386 2 1681 588 155 0 10 chr1 143662440 143662538 -53532894 + L1VL1 LINE L1 1 97 -6325 2 1681 8465 92 3 3 chr1 143662540 143664130 -53531302 + L1Md_F2 LINE L1 800 2486 -3400 2 1681 12211 88 8 1 chr1 143664112 143665809 -53529623 + L1Md_F2 LINE L1 3879 5588 -298 2 1681 7155 90 4 8 chr1 143665810 143666809 -53528623 + L1Md_F2 LINE L1 5590 6584 -1 2 1681 598 98 0 10 chr1 143666817 143666920 -53528512 + L1_Mus2 LINE L1 6463 6564 -2 2 1681 180 0 0 0 chr1 143666939 143666959 -53528473 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1681 1666 204 24 16 chr1 143666962 143667335 -53528097 + Lx2B LINE L1 6620 6995 -5 2 1681 682 269 26 44 chr1 143667343 143667572 -53527860 - RLTR40 LTR ERVK -592 225 1 2 1681 194 62 0 30 chr1 143667818 143667851 -53527581 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1681 23 54 0 0 chr1 143667874 143667911 -53527521 + AT_rich Low_complexity Low_complexity 1 37 0 2 1681 25 0 0 0 chr1 143669022 143669047 -53526385 + AT_rich Low_complexity Low_complexity 1 25 0 2 1681 22 35 0 0 chr1 143669404 143669433 -53525999 + AT_rich Low_complexity Low_complexity 1 29 0 2 1681 251 316 10 39 chr1 143669440 143669542 -53525890 + Lx8 LINE L1 6176 6274 -1199 2 1681 635 323 94 21 chr1 143669773 143670077 -53525355 + ORR1D2 LTR MaLR 4 369 -1 2 1681 460 236 189 92 chr1 143670418 143670656 -53524776 - RLTR28B LTR ERVL -220 261 1 2 1681 908 306 76 34 chr1 143670756 143671084 -53524348 + ORR1D2 LTR MaLR 1 342 -28 2 1681 450 0 0 0 chr1 143671097 143671147 -53524285 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1681 189 0 0 0 chr1 143671152 143671173 -53524259 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 2 1681 219 146 0 0 chr1 143671173 143671214 -53524218 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1681 192 227 104 15 chr1 143671280 143671347 -53524085 - L2 LINE L2 -1360 2059 1987 2 1681 21 0 0 0 chr1 143671496 143671517 -53523915 + AT_rich Low_complexity Low_complexity 1 21 0 2 1681 718 339 40 0 chr1 143671570 143671797 -53523635 - ORR1E LTR MaLR -121 238 3 2 1681 207 69 0 0 chr1 143672033 143672062 -53523370 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2 1681 492 72 0 0 chr1 143672057 143672126 -53523306 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 2 1681 508 90 11 0 chr1 143672184 143672273 -53523159 - L1Md_F2 LINE L1 0 6582 6493 2 1681 1613 179 6 62 chr1 143673265 143673605 -53521827 - ORR1A4 LTR MaLR -8 321 1 2 1681 6765 210 70 62 chr1 143673605 143675448 -53519984 - ORR1A4-int LTR MaLR 0 1963 1 2 1681 237 33 0 0 chr1 143675620 143675650 -53519782 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1681 23 92 0 0 chr1 143675891 143675956 -53519476 + AT_rich Low_complexity Low_complexity 1 65 0 2 1681 1664 171 13 16 chr1 143675978 143676293 -53519139 - Lx LINE L1 0 6654 6341 2 1681 25 31 0 0 chr1 143676470 143676502 -53518930 + AT_rich Low_complexity Low_complexity 1 32 0 2 1681 21 36 0 0 chr1 143676996 143677024 -53518408 + AT_rich Low_complexity Low_complexity 1 28 0 2 1681 3268 104 43 4 chr1 143677067 143677577 -53517855 - L1_Mur1 LINE L1 -657 5229 4700 2 1681 2119 116 150 18 chr1 143677571 143678126 -53517306 + Lx3A LINE L1 6340 6967 -14 2 1681 414 0 0 0 chr1 143678126 143678172 -53517260 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1681 359 341 50 39 chr1 143678172 143678202 -53517230 + Lx2B LINE L1 6971 6999 -1 2 1681 3598 61 0 0 chr1 143679052 143679511 -53515921 + L1Md_F2 LINE L1 6123 6581 -1 2 1681 829 318 70 53 chr1 143680109 143680653 -53514779 + Lx6 LINE L1 6510 7433 -27 2 1681 23 0 0 0 chr1 143680654 143680677 -53514755 + AT_rich Low_complexity Low_complexity 1 23 0 2 1681 249 212 38 0 chr1 143680938 143681018 -53514414 + L1M3 LINE L1 3320 3402 -2738 2 1681 576 221 108 0 chr1 143681097 143681310 -53514122 - Lx9 LINE L1 -1 7643 7408 2 1681 22 0 0 0 chr1 143681424 143681446 -53513986 + AT_rich Low_complexity Low_complexity 1 22 0 2 1681 1212 266 136 11 chr1 143681446 143681540 -53513892 - Lx6 LINE L1 -33 7427 7299 2 1681 4507 55 19 9 chr1 143681540 143682124 -53513308 - L1Md_F3 LINE L1 -2 6582 5993 2 1681 1212 266 136 11 chr1 143682124 143682397 -53513035 - Lx6 LINE L1 -162 7298 7015 2 1681 24 96 0 0 chr1 143682724 143682797 -53512635 + AT_rich Low_complexity Low_complexity 1 73 0 2 1681 630 273 77 17 chr1 143683233 143683651 -53511781 - L1M2 LINE L1 -528 5772 5319 2 1681 252 0 0 0 chr1 143683676 143683704 -53511728 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1681 576 344 5 53 chr1 143683953 143684143 -53511289 + ORR1E LTR MaLR 9 189 -170 2 1681 20033 122 154 10 chr1 143684226 143687246 -53508186 + L1_Mus2 LINE L1 420 3476 -2407 2 1681 216 0 0 0 chr1 143687246 143687270 -53508162 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1681 20033 113 166 1 chr1 143687270 143689003 -53506429 + L1_Mus2 LINE L1 3477 5991 -575 2 1681 1110 84 0 0 chr1 143689211 143689366 -53506066 + (TTCC)n Simple_repeat Simple_repeat 3 157 0 2 1681 714 152 0 0 chr1 143689889 143690066 -53505366 + GA-rich Low_complexity Low_complexity 2 178 0 2 1681 22 0 0 0 chr1 143690158 143690180 -53505252 + AT_rich Low_complexity Low_complexity 1 22 0 2 1681 2121 289 18 8 chr1 143690419 143691025 -53504407 - Lx6 LINE L1 -4 7456 6845 2 1681 6011 126 36 92 chr1 143691820 143692987 -53502445 - Lx3_Mus LINE L1 0 7009 5908 2 1681 1001 192 5 19 chr1 143694341 143694553 -53500879 - L1Md_F LINE L1 -6201 318 110 2 1681 5391 29 0 0 chr1 143694553 143695183 -53500249 + L1Md_A LINE L1 5951 6580 -2 2 1681 230 330 38 0 chr1 143695299 143695405 -53500027 + Lx7 LINE L1 6987 7096 -600 2 1681 275 365 20 33 chr1 143695433 143695583 -53499849 + Lx8 LINE L1 7109 7256 -217 2 1681 338 258 31 0 chr1 143695807 143695935 -53499497 - Lx9 LINE L1 0 7644 7513 2 1681 21 57 0 0 chr1 143695967 143696002 -53499430 + AT_rich Low_complexity Low_complexity 1 35 0 2 1681 327 262 12 12 chr1 143696104 143696189 -53499243 - B3 SINE B2 -23 193 109 2 1681 227 49 0 68 chr1 143696189 143696233 -53499199 + L1_Mus2 LINE L1 6526 6566 0 2 1681 33634 79 15 4 chr1 143697292 143703458 -53491974 + L1Md_F2 LINE L1 322 6559 -23 3 1681 458 229 28 0 chr1 143703454 143703563 -53491869 - L1_Mur2 LINE L1 -708 5169 5058 3 1681 387 0 0 0 chr1 143703564 143703607 -53491825 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1681 604 324 48 4 chr1 143703610 143703883 -53491549 - Lx9 LINE L1 -179 7465 7181 2 1681 228 277 36 0 chr1 143704044 143704156 -53491276 - Lx7 LINE L1 -3 7693 7578 3 1681 387 0 0 0 chr1 143704255 143704298 -53491134 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1681 1035 307 36 64 chr1 143704943 143705123 -53490309 + MTE2b LTR MaLR 1 174 -205 3 1681 5153 149 31 34 chr1 143705123 143706113 -53489319 - Lx2A1 LINE L1 -5 7003 6017 3 1681 1035 307 36 64 chr1 143706113 143706322 -53489110 + MTE2b LTR MaLR 175 379 0 3 1681 2522 101 11 0 chr1 143706337 143706702 -53488730 + MTB LTR MaLR 3 371 -29 3 1681 635 0 13 0 chr1 143706750 143706825 -53488607 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1681 366 357 64 6 chr1 143707325 143707497 -53487935 + MLT1D LTR MaLR 275 456 -49 3 1681 33 25 0 0 chr1 143707542 143707582 -53487850 + AT_rich Low_complexity Low_complexity 1 40 0 3 1681 270 21 64 0 chr1 143707815 143707862 -53487570 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 1681 7290 87 13 8 chr1 143707862 143709314 -53486118 - L1_Mus2 LINE L1 -5 6561 5104 3 1681 733 51 25 8 chr1 143709314 143709433 -53485999 - L1Md_F3 LINE L1 -1 6583 6463 3 1681 5011 121 18 22 chr1 143709433 143709464 -53485968 - L1_Mus2 LINE L1 -780 5103 5073 3 1681 32 0 0 0 chr1 143711246 143711278 -53484154 + AT_rich Low_complexity Low_complexity 1 32 0 3 1681 441 36 0 0 chr1 143712342 143712397 -53483035 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1681 462 319 77 75 chr1 143713083 143713523 -53481909 - RLTR26 LTR ERVK -74 568 128 3 1681 407 256 144 47 chr1 143713633 143713835 -53481597 - RLTR18B LTR ERVK -119 497 274 3 1681 1736 211 3 3 chr1 143713835 143714173 -53481259 + ORR1A1 LTR MaLR 1 338 -8 3 1681 5670 198 64 56 chr1 143714177 143715673 -53479759 + ORR1A1-int LTR MaLR 1 1508 -284 3 1681 202 94 18 70 chr1 143716164 143716221 -53479211 + T-rich Low_complexity Low_complexity 2 55 0 3 1681 22 0 0 0 chr1 143716501 143716523 -53478909 + AT_rich Low_complexity Low_complexity 1 22 0 3 1681 1174 75 0 0 chr1 143716730 143716877 -53478555 - B1_Mus2 SINE Alu 0 147 1 3 1681 21 36 0 0 chr1 143716878 143716906 -53478526 + AT_rich Low_complexity Low_complexity 1 28 0 3 1681 445 375 36 79 chr1 143717028 143717306 -53478126 + B4A SINE B4 6 271 -21 3 1681 766 272 80 76 chr1 143717597 143717848 -53477584 - MTC LTR MaLR -67 354 103 3 1681 202 179 0 35 chr1 143717852 143717910 -53477522 + CT-rich Low_complexity Low_complexity 2 57 0 3 1681 570 29 0 0 chr1 143717917 143717985 -53477447 + (TCC)n Simple_repeat Simple_repeat 3 70 0 3 1681 572 226 16 44 chr1 143717985 143718121 -53477311 - ORR1D2 LTR MaLR -56 314 178 3 1681 1013 113 6 0 chr1 143718202 143718361 -53477071 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 3 1681 2055 301 87 39 chr1 143718700 143719260 -53476172 - RMER1C Other Other -2 1340 733 3 1681 1201 61 0 0 chr1 143719260 143719407 -53476025 + B1_Mus1 SINE Alu 2 148 0 3 1681 2055 301 87 39 chr1 143719407 143719768 -53475664 - RMER1C Other Other -610 732 375 3 1681 470 311 58 29 chr1 143719773 143719945 -53475487 - RMER1C Other Other -520 822 646 3 1681 461 139 0 81 chr1 143719945 143720031 -53475401 - MTC LTR MaLR -340 81 3 3 1681 255 31 0 0 chr1 143720031 143720063 -53475369 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1681 341 312 118 24 chr1 143720512 143720758 -53474674 + Lx8 LINE L1 7205 7473 0 3 1681 4913 153 48 15 chr1 143722344 143723271 -53472161 + RMER17B LTR ERVK 1 958 0 3 1681 243 79 0 0 chr1 143723289 143723327 -53472105 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1681 22 35 0 0 chr1 143723469 143723498 -53471934 + AT_rich Low_complexity Low_complexity 1 29 0 3 1681 23 0 0 0 chr1 143724199 143724222 -53471210 + AT_rich Low_complexity Low_complexity 1 23 0 3 1681 227 250 18 0 chr1 143724454 143724510 -53470922 + Charlie14a DNA MER1_type 2 58 -1106 3 1681 23 54 0 0 chr1 143724794 143724831 -53470601 + AT_rich Low_complexity Low_complexity 1 37 0 3 1681 419 186 22 3 chr1 143725290 143725398 -53470034 - ORR1D2 LTR MaLR -14 407 290 3 1681 486 143 0 0 chr1 143725588 143725679 -53469753 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1681 2229 169 25 7 chr1 143726229 143726635 -53468797 + Lx4A LINE L1 6642 7054 -4 3 1681 252 257 110 42 chr1 143726841 143726959 -53468473 + L1M2 LINE L1 5469 5594 -697 3 1681 360 0 0 0 chr1 143726959 143726999 -53468433 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1681 292 366 45 28 chr1 143727290 143727467 -53467965 - MLT2B4 LTR ERVL -350 206 27 3 1681 1133 259 64 11 chr1 143727558 143727918 -53467514 - MTE2b LTR MaLR 0 379 1 3 1681 319 331 59 43 chr1 143728327 143728513 -53466919 + MIRb SINE MIR 7 195 -73 3 1681 252 298 71 0 chr1 143728881 143728965 -53466467 - MTEa LTR MaLR 0 379 290 3 1681 14043 76 2 24 chr1 143729092 143731071 -53464361 - L1_Mm LINE L1 -320 5563 3627 3 1681 6050 66 16 7 chr1 143731071 143731882 -53463550 + L1Md_F2 LINE L1 5765 6582 0 3 1681 13369 106 15 17 chr1 143732401 143734677 -53460755 + Lx3_Mus LINE L1 3867 6146 -863 3 1681 5901 157 29 17 chr1 143734675 143735304 -53460128 - Lx LINE L1 -224 6430 5797 3 1681 194 0 0 37 chr1 143735304 143735331 -53460101 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1681 1003 110 7 0 chr1 143735331 143735476 -53459956 - B1_Mus1 SINE Alu -1 147 2 3 1681 5901 178 26 32 chr1 143735476 143736605 -53458827 - Lx LINE L1 -87 5796 4672 3 1681 258 32 0 0 chr1 143736642 143736673 -53458759 + (CATA)n Simple_repeat Simple_repeat 1 31 0 3 1681 462 18 0 0 chr1 143738726 143738781 -53456651 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1681 345 250 0 80 chr1 143738794 143738894 -53456538 + Lx9 LINE L1 7328 7419 -225 3 1681 262 268 0 0 chr1 143739648 143739704 -53455728 + CT-rich Low_complexity Low_complexity 2 57 0 3 1681 783 96 36 0 chr1 143739721 143739888 -53455544 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 1681 22 35 0 0 chr1 143740132 143740161 -53455271 + AT_rich Low_complexity Low_complexity 1 29 0 3 1681 213 139 0 0 chr1 143740217 143740260 -53455172 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1681 396 0 0 0 chr1 143740263 143740307 -53455125 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1681 402 100 0 0 chr1 143741893 143741953 -53453479 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1681 25 65 0 0 chr1 143742665 143742711 -53452721 + AT_rich Low_complexity Low_complexity 1 46 0 3 1681 236 53 0 26 chr1 143742857 143742896 -53452536 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1681 9792 162 69 10 chr1 143743086 143745885 -53449547 - Lx LINE L1 -7 6647 3666 3 1681 4803 99 33 39 chr1 143745878 143746503 -53448929 - MusHAL1 LINE L1 -976 1736 1094 3 1681 1147 82 0 0 chr1 143746503 143746650 -53448782 + B1_Mm SINE Alu 1 147 0 3 1681 4803 99 33 39 chr1 143746650 143746822 -53448610 - MusHAL1 LINE L1 -1619 1093 944 3 1681 2887 223 53 7 chr1 143746937 143747614 -53447818 + Lx4B LINE L1 6329 7036 -22 3 1681 41 21 0 0 chr1 143747614 143747662 -53447770 + AT_rich Low_complexity Low_complexity 1 48 0 3 1681 240 35 0 0 chr1 143747662 143747691 -53447741 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3 1681 356 292 214 41 chr1 143747699 143748238 -53447194 - Lx9 LINE L1 -1019 6625 5886 3 1681 235 213 21 0 chr1 143748247 143748294 -53447138 + CT-rich Low_complexity Low_complexity 3 50 0 3 1681 232 240 0 0 chr1 143748293 143748343 -53447089 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1681 311 60 20 0 chr1 143748359 143748409 -53447023 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 1681 227 0 91 0 chr1 143748518 143748551 -53446881 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 3 1681 373 337 90 0 chr1 143748621 143748787 -53446645 - ID_B1 SINE B4 -40 184 4 3 1681 189 107 0 0 chr1 143749145 143749173 -53446259 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1681 784 113 56 16 chr1 143749173 143749299 -53446133 - RLTR9E LTR ERVK -109 300 170 3 1681 1639 238 54 139 chr1 143749313 143749904 -53445528 - RLTR1D LTR ERV1 -13 592 52 3 1681 1206 98 0 6 chr1 143749919 143750094 -53445338 - RLTR9E LTR ERVK -235 174 1 3 1681 504 92 0 50 chr1 143750094 143750174 -53445258 - ETnERV2-int LTR ERVK 0 7406 7331 3 1681 1059 140 118 5 chr1 143750384 143750571 -53444861 - ETnERV2-int LTR ERVK -977 6429 6222 3 1681 1938 60 0 27 chr1 143750619 143750875 -53444557 - ETnERV2-int LTR ERVK -1179 6227 5979 3 1681 243 175 0 0 chr1 143751210 143751267 -53444165 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1681 328 337 42 0 chr1 143751424 143751519 -53443913 + RSINE1 SINE B4 57 155 -10 3 1681 262 379 14 50 chr1 143752358 143752497 -53442935 + ID_B1 SINE B4 86 219 -5 3 1681 248 342 0 112 chr1 143752511 143752600 -53442832 + ID4_ SINE ID 2 80 -3 3 1681 288 333 0 0 chr1 143752615 143752693 -53442739 + Lx8 LINE L1 7250 7327 -146 3 1681 858 278 5 14 chr1 143752693 143752908 -53442524 + MTD LTR MaLR 1 213 -206 3 1681 2329 34 44 3 chr1 143752908 143753206 -53442226 - L1_Mus2 LINE L1 -347 6219 5910 3 1681 1810 83 190 0 chr1 143753204 143753493 -53441939 + L1_Mus2 LINE L1 6223 6566 0 3 1681 708 296 36 45 chr1 143753515 143753738 -53441694 + MTD LTR MaLR 197 417 -2 3 1681 429 314 114 29 chr1 143754978 143755424 -53440008 - L1MC2 LINE L1 -352 6060 5577 3 1681 305 338 89 46 chr1 143755434 143755849 -53439583 - L1MC2 LINE L1 -772 5442 5010 3 1681 229 321 75 22 chr1 143755903 143756037 -53439395 - L1MC2 LINE L1 -5675 540 400 3 1681 22 0 0 0 chr1 143756140 143756162 -53439270 + AT_rich Low_complexity Low_complexity 1 22 0 3 1681 1264 144 0 11 chr1 143756256 143756494 -53438938 - L1_Mus2 LINE L1 -244 6340 6107 3 1681 1532 92 13 0 chr1 143756495 143756722 -53438710 + L1_Mus3 LINE L1 6403 6632 -6 3 1681 23 78 0 0 chr1 143757499 143757550 -53437882 + AT_rich Low_complexity Low_complexity 1 51 0 3 1681 315 371 53 64 chr1 143757550 143757737 -53437695 - B3A SINE B2 0 198 14 3 1681 333 0 0 0 chr1 143757986 143758023 -53437409 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1681 363 294 74 46 chr1 143758419 143758786 -53436646 - L1M4b LINE L1 -5642 1692 1316 3 1681 186 133 0 0 chr1 143758961 143758991 -53436441 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1681 24 0 0 0 chr1 143759446 143759470 -53435962 + AT_rich Low_complexity Low_complexity 1 24 0 3 1681 2431 159 7 28 chr1 143759551 143760416 -53435016 - Lx3B LINE L1 -1 6980 6030 4 1681 209 119 24 0 chr1 143760489 143760531 -53434901 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1681 438 20 0 0 chr1 143760568 143760619 -53434813 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1681 253 353 12 84 chr1 143760634 143760801 -53434631 - B4A SINE B4 0 292 138 4 1681 26 0 0 0 chr1 143761139 143761165 -53434267 + AT_rich Low_complexity Low_complexity 1 26 0 4 1681 21 0 0 0 chr1 143762633 143762654 -53432778 + AT_rich Low_complexity Low_complexity 1 21 0 4 1681 1489 304 80 22 chr1 143762838 143763222 -53432210 + Lx7 LINE L1 6963 7353 -343 4 1681 500 30 15 0 chr1 143763222 143763288 -53432144 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1681 1489 304 80 22 chr1 143763288 143763461 -53431971 + Lx7 LINE L1 7354 7542 -154 4 1681 250 67 22 22 chr1 143763461 143763507 -53431925 + (TTA)n Simple_repeat Simple_repeat 2 47 0 4 1681 1489 304 80 22 chr1 143763507 143763638 -53431794 + Lx7 LINE L1 7543 7690 -6 4 1681 25 31 0 0 chr1 143763638 143763670 -53431762 + AT_rich Low_complexity Low_complexity 1 32 0 4 1681 8667 75 57 37 chr1 143763670 143765252 -53430180 - L1Md_F2 LINE L1 -4 6578 4895 4 1681 234 212 68 91 chr1 143765252 143765340 -53430092 + RMER20A LTR ERVK 163 248 -268 4 1681 8667 75 57 37 chr1 143765340 143765761 -53429671 - L1Md_F2 LINE L1 -4 4894 4445 4 1681 322 98 0 0 chr1 143765762 143765803 -53429629 - L1_Mur1 LINE L1 -2089 3797 3757 4 1681 3100 146 12 4 chr1 143765801 143766317 -53429115 + Lx3_Mus LINE L1 6053 6572 -437 4 1681 1404 132 9 0 chr1 143766317 143766529 -53428903 - RMER17B LTR ERVK -744 214 1 4 1681 963 268 6 54 chr1 143766540 143766871 -53428561 - L1_Mur3 LINE L1 -3829 2051 1737 4 1681 24 32 0 0 chr1 143768162 143768193 -53427239 + AT_rich Low_complexity Low_complexity 1 31 0 4 1681 330 82 82 0 chr1 143768326 143768399 -53427033 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 4 1681 355 80 0 0 chr1 143768423 143768473 -53426959 - B2_Mm2 SINE B2 -97 98 49 4 1681 216 0 0 0 chr1 143768768 143768792 -53426640 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1681 270 298 68 34 chr1 143769078 143769283 -53426149 - L1M4 LINE L1 -1583 4563 4352 4 1681 2463 130 51 0 chr1 143769303 143769696 -53425736 + Lx3_Mus LINE L1 6589 7001 -8 4 1681 417 258 45 45 chr1 143769718 143769852 -53425580 + Lx6 LINE L1 6097 6230 -1230 4 1681 1429 146 22 54 chr1 143769929 143770205 -53425227 + ORR1A2 LTR MaLR 3 269 -58 4 1681 24 67 0 0 chr1 143771115 143771160 -53424272 + AT_rich Low_complexity Low_complexity 1 45 0 4 1681 23 68 0 0 chr1 143771262 143771306 -53424126 + AT_rich Low_complexity Low_complexity 1 44 0 4 1681 24 53 0 0 chr1 143771390 143771428 -53424004 + AT_rich Low_complexity Low_complexity 1 38 0 4 1681 237 219 78 0 chr1 143771560 143771624 -53423808 + Lx7 LINE L1 7408 7476 -220 4 1681 297 109 0 0 chr1 143771688 143771734 -53423698 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 4 1681 229 291 43 65 chr1 143771746 143771838 -53423594 + Lx7 LINE L1 7199 7288 -408 4 1681 396 0 0 0 chr1 143771873 143771917 -53423515 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1681 234 43 62 21 chr1 143771935 143771983 -53423449 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1681 1820 52 0 0 chr1 143772055 143772284 -53423148 + L1_Mus1 LINE L1 6339 6567 0 4 1681 43 71 0 0 chr1 143772349 143772434 -53422998 + AT_rich Low_complexity Low_complexity 1 85 0 4 1681 2244 262 68 35 chr1 143772489 143773256 -53422176 - RLTR40 LTR ERVK -10 807 16 4 1681 215 178 22 0 chr1 143773442 143773487 -53421945 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 1681 247 305 0 0 chr1 143774371 143774430 -53421002 - ID4_ SINE ID -20 63 5 4 1681 219 313 153 24 chr1 143774439 143774524 -53420908 - PB1 SINE Alu -16 111 16 4 1681 271 332 32 25 chr1 143775296 143775577 -53419855 - L1M3f LINE L1 -4101 1227 945 4 1681 219 61 39 39 chr1 143775792 143775843 -53419589 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1681 228 111 0 0 chr1 143777381 143777417 -53418015 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1681 1129 69 0 0 chr1 143777424 143777569 -53417863 - B1_Mus1 SINE Alu -2 146 2 4 1681 4329 88 71 2 chr1 143778082 143778719 -53416713 - L1_Mus2 LINE L1 0 6566 5886 4 1681 271 274 122 9 chr1 143778720 143778827 -53416605 + Lx7 LINE L1 7038 7156 -540 4 1681 532 318 96 21 chr1 143779127 143779564 -53415868 - L1MC1 LINE L1 -501 5832 5363 4 1681 296 317 19 9 chr1 143779575 143779680 -53415752 + MLT2B3 LTR ERVL 14 119 -435 4 1681 280 321 45 36 chr1 143780022 143780132 -53415300 + MTEa LTR MaLR 69 179 -200 4 1681 229 0 83 0 chr1 143780132 143780168 -53415264 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 4 1681 1682 156 11 0 chr1 143780168 143780443 -53414989 + RLTR26 LTR ERVK 1 278 -364 4 1681 309 312 61 30 chr1 143780647 143780845 -53414587 + RLTR41 LTR ERV1 211 414 -32 4 1681 1420 171 39 116 chr1 143780873 143781236 -53414196 + RLTR26 LTR ERVK 278 612 -30 4 1681 544 306 30 49 chr1 143781235 143781438 -53413994 + MTEa LTR MaLR 180 378 -1 4 1681 396 333 0 16 chr1 143781850 143781975 -53413457 - B1F SINE Alu -3 146 24 4 1681 32 57 0 0 chr1 143782782 143782835 -53412597 + AT_rich Low_complexity Low_complexity 1 53 0 4 1681 355 355 77 0 chr1 143782905 143783060 -53412372 - B3A SINE B2 -24 174 8 4 1681 4361 95 3 0 chr1 143783077 143783685 -53411747 - L1_Mus1 LINE L1 0 6567 5958 4 1681 227 300 164 0 chr1 143784153 143784263 -53411169 + RSINE1 SINE B4 7 134 -31 4 1681 401 296 73 15 chr1 143784933 143785188 -53410244 + L1MA6 LINE L1 5961 6242 -49 4 1681 29 0 0 0 chr1 143785264 143785293 -53410139 + AT_rich Low_complexity Low_complexity 1 29 0 4 1681 22 0 0 0 chr1 143785613 143785635 -53409797 + AT_rich Low_complexity Low_complexity 1 22 0 4 1682 297 75 0 0 chr1 143786278 143786318 -53409114 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1682 192 158 0 0 chr1 143786318 143786356 -53409076 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1682 824 312 160 5 chr1 143786585 143786978 -53408454 - Lx8 LINE L1 -150 7323 6870 4 1682 395 265 10 10 chr1 143787076 143787179 -53408253 - MTC LTR MaLR 0 421 319 4 1682 1067 201 104 8 chr1 143787183 143787424 -53408008 + MTC LTR MaLR 35 298 -123 4 1682 3004 262 54 9 chr1 143787449 143788360 -53407072 - RMER1B Other Other -14 1052 15 4 1682 515 285 312 7 chr1 143788346 143788625 -53406807 - RMER1B Other Other -653 413 50 4 1682 253 228 0 17 chr1 143788850 143788908 -53406524 + MTC LTR MaLR 365 421 0 4 1682 1781 183 13 6 chr1 143789278 143789671 -53405761 + Lx4A LINE L1 6614 7058 0 4 1682 1754 177 15 18 chr1 143789718 143790046 -53405386 - ORR1A2 LTR MaLR 0 327 1 4 1682 478 332 103 9 chr1 143790619 143790968 -53404464 - MER63C DNA AcHobo -261 669 288 4 1682 211 85 0 41 chr1 143791177 143791226 -53404206 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1682 965 114 50 0 chr1 143791229 143791369 -53404063 - B1_Mus1 SINE Alu 0 148 2 4 1682 228 413 118 10 chr1 143791374 143791577 -53403855 + B4A SINE B4 53 277 -15 4 1682 360 0 0 0 chr1 143792175 143792215 -53403217 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1682 576 284 8 0 chr1 143792250 143792384 -53403048 - B3 SINE B2 -75 141 7 4 1682 2856 86 5 20 chr1 143792811 143793213 -53402219 - MTA_Mm LTR MaLR 0 396 1 4 1682 381 361 119 25 chr1 143793863 143794468 -53400964 + Lx8 LINE L1 5719 6380 -1093 4 1682 1176 360 70 25 chr1 143794932 143795889 -53399543 + Lx8 LINE L1 6405 7404 -69 4 1682 1967 140 70 61 chr1 143795909 143796321 -53399111 + Lx3C LINE L1 5145 5560 -326 4 1682 1273 117 19 10 chr1 143796325 143796532 -53398900 + Lx3C LINE L1 5761 5969 -1007 4 1682 3644 51 72 0 chr1 143797054 143797527 -53397905 + L1Md_F2 LINE L1 6076 6582 0 4 1682 22 80 0 0 chr1 143798002 143798052 -53397380 + AT_rich Low_complexity Low_complexity 1 50 0 4 1682 644 51 0 0 chr1 143798184 143798262 -53397170 - L1Md_F2 LINE L1 -325 6257 6180 4 1682 1063 97 29 35 chr1 143798264 143798435 -53396997 + L1Md_F2 LINE L1 6403 6572 -10 4 1682 24 32 0 0 chr1 143798874 143798905 -53396527 + AT_rich Low_complexity Low_complexity 1 31 0 4 1682 483 306 98 58 chr1 143798926 143798968 -53396464 + B3 SINE B2 1 48 -168 4 1682 1040 83 7 0 chr1 143798968 143799112 -53396320 + B1_Mus2 SINE Alu 3 147 0 4 1682 483 306 98 58 chr1 143799112 143799274 -53396158 + B3 SINE B2 49 213 -3 4 1682 286 339 8 25 chr1 143800477 143800595 -53394837 + PB1D10 SINE Alu 1 116 -1 4 1682 696 45 0 0 chr1 143800618 143800706 -53394726 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 1682 204 225 0 0 chr1 143801936 143801976 -53393456 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1682 253 0 0 51 chr1 143802699 143802738 -53392694 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1682 206 62 31 0 chr1 143802967 143802999 -53392433 + (TAA)n Simple_repeat Simple_repeat 1 33 0 4 1682 545 311 40 41 chr1 143804022 143804288 -53391144 - MLT1B LTR MaLR -5 462 117 4 1682 242 253 12 12 chr1 143804631 143804715 -53390717 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1682 439 260 24 31 chr1 143805785 143805887 -53389545 + RMER10A LTR ERVL 1 101 -341 4 1682 2232 99 9 37 chr1 143805887 143806270 -53389162 - RLTR1C LTR ERV1 0 512 169 4 1682 5627 26 0 0 chr1 143806270 143806926 -53388506 - L1Md_T LINE L1 0 6582 5927 4 1682 1817 224 40 99 chr1 143806926 143807086 -53388346 - RLTR1C LTR ERV1 -344 168 2 4 1682 643 245 199 43 chr1 143807089 143807343 -53388089 + RMER10A LTR ERVL 115 416 -26 4 1682 1101 81 29 0 chr1 143807343 143807516 -53387916 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 4 1682 643 245 199 43 chr1 143807516 143807542 -53387890 + RMER10A LTR ERVL 417 439 -3 4 1682 340 155 17 0 chr1 143807591 143807649 -53387783 - RMER10A LTR ERVL -383 59 1 4 1682 252 0 0 0 chr1 143807848 143807876 -53387556 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1682 564 291 74 30 chr1 143808707 143808909 -53386523 - ID_B1 SINE B4 -8 216 6 4 1682 1168 61 0 0 chr1 143808937 143809084 -53386348 + B1_Mm SINE Alu 1 147 0 4 1682 390 148 17 9 chr1 143809086 143809202 -53386230 + A-rich Low_complexity Low_complexity 3 119 0 4 1682 1537 180 32 4 chr1 143809396 143809675 -53385757 - L1_Mur1 LINE L1 -193 5693 5407 4 1682 580 187 0 16 chr1 143809679 143809804 -53385628 + Lx3C LINE L1 5952 6074 -902 5 1682 479 202 11 0 chr1 143809790 143809884 -53385548 + Lx3C LINE L1 6453 6547 -429 5 1682 2814 162 68 2 chr1 143809934 143810461 -53384971 + Lx3C LINE L1 6408 6969 -7 5 1682 22 35 0 0 chr1 143811019 143811048 -53384384 + AT_rich Low_complexity Low_complexity 1 29 0 5 1682 22 0 0 0 chr1 143811217 143811239 -53384193 + AT_rich Low_complexity Low_complexity 1 22 0 5 1682 307 307 52 9 chr1 143811480 143811595 -53383837 - MLT1D LTR MaLR -321 184 65 5 1682 180 0 0 0 chr1 143811979 143811999 -53383433 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1682 4721 166 19 26 chr1 143812182 143813068 -53382364 - Lx2 LINE L1 -345 6652 5773 5 1682 1557 164 11 0 chr1 143813065 143813328 -53382104 - Lx2 LINE L1 -250 5633 5368 5 1682 499 266 122 17 chr1 143813334 143813506 -53381926 + MTEa LTR MaLR 187 376 -3 5 1682 23 68 0 0 chr1 143813756 143813800 -53381632 + AT_rich Low_complexity Low_complexity 1 44 0 5 1682 22 80 0 0 chr1 143814454 143814504 -53380928 + AT_rich Low_complexity Low_complexity 1 50 0 5 1682 204 176 78 0 chr1 143815395 143815446 -53379986 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 5 1682 355 49 32 16 chr1 143815853 143815915 -53379517 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1682 569 251 25 12 chr1 143815915 143816076 -53379356 + Lx9 LINE L1 7320 7482 -162 5 1682 202 179 35 18 chr1 143816332 143816389 -53379043 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 5 1682 3489 153 109 7 chr1 143817183 143817859 -53377573 - Lx2B LINE L1 0 7000 6256 5 1682 2075 49 11 0 chr1 143818178 143818443 -53376989 - L1_Mus1 LINE L1 0 6567 6300 5 1682 22 0 0 0 chr1 143818546 143818568 -53376864 + AT_rich Low_complexity Low_complexity 1 22 0 5 1682 273 317 52 22 chr1 143818682 143818950 -53376482 + L1M2 LINE L1 5505 5780 -520 5 1682 384 153 0 0 chr1 143818972 143819057 -53376375 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1682 246 258 0 15 chr1 143819057 143819124 -53376308 + L1_Rod LINE L1 5709 5774 -73 5 1682 269 343 0 79 chr1 143819377 143819453 -53375979 + RSINE1 SINE B4 96 165 0 5 1682 1802 91 16 0 chr1 143820544 143820797 -53374635 + L1_Mus1 LINE L1 6311 6567 0 5 1682 3363 184 21 2 chr1 143820811 143821420 -53374012 + Lx4A LINE L1 6435 7055 -3 5 1682 219 114 0 0 chr1 143821420 143821455 -53373977 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 5 1682 429 20 0 0 chr1 143821563 143821613 -53373819 - L1Md_A LINE L1 -503 5380 5331 5 1682 1809 5 0 0 chr1 143821613 143821814 -53373618 + L1Md_A LINE L1 5386 5586 -297 5 1682 9008 3 0 0 chr1 143821814 143822810 -53372622 + L1Md_A LINE L1 5587 6582 0 5 1682 9602 24 8 1 chr1 143827068 143828888 -53366544 - L1Md_T LINE L1 -3 6579 4747 5 1682 238 33 0 0 chr1 143828884 143828914 -53366518 + L1Md_A LINE L1 1066 1095 -5629 5 1682 2801 142 28 13 chr1 143829120 143829592 -53365840 + Lx LINE L1 6176 6654 0 5 1682 230 361 24 12 chr1 143829610 143829694 -53365738 - MLT2B2 LTR ERVL -258 257 173 5 1682 5490 95 1 0 chr1 143829938 143830926 -53364506 - L1_Mus1 LINE L1 -516 6051 5063 5 1682 4306 76 2 3 chr1 143830926 143831496 -53363936 + L1_Mus1 LINE L1 5999 6567 0 5 1682 2262 77 7 3 chr1 143832206 143832505 -53362927 + L1_Mus2 LINE L1 6134 6433 -133 5 1682 355 339 0 53 chr1 143832524 143832675 -53362757 - B3A SINE B2 -41 175 35 5 1682 21722 117 18 83 chr1 143832698 143834235 -53361197 - L1_Mm LINE L1 -711 5172 3644 5 1682 591 42 21 10 chr1 143834235 143834332 -53361100 - L1Md_F2 LINE L1 -3 6579 6482 5 1682 21722 117 18 83 chr1 143834332 143836841 -53358591 - L1_Mm LINE L1 -2240 3643 1392 5 1682 5880 190 62 3 chr1 143836846 143838076 -53357356 - RMER6-int LTR ERVK -1875 1302 1 5 1682 1561 256 82 75 chr1 143838078 143838434 -53356998 - RMER6C LTR ERVK -2 754 411 5 1682 507 17 0 0 chr1 143838434 143838494 -53356938 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1682 1561 248 91 87 chr1 143838494 143838913 -53356519 - RMER6C LTR ERVK -259 431 1 5 1682 1021 111 0 0 chr1 143839929 143840064 -53355368 + B1_Mus2 SINE Alu 3 137 -10 5 1682 230 0 33 0 chr1 143840064 143840094 -53355338 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1682 3719 143 11 24 chr1 143840538 143841198 -53354234 - Lx LINE L1 -2 6652 6002 5 1682 4968 168 14 5 chr1 143841199 143841838 -53353594 + Lx2 LINE L1 4215 4854 -1029 5 1682 432 0 0 0 chr1 143841838 143841886 -53353546 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1682 4968 168 14 5 chr1 143841886 143842170 -53353262 + Lx2 LINE L1 4855 5146 -737 5 1682 11236 121 22 6 chr1 143842155 143844535 -53350897 - L1VL2 LINE L1 -910 2705 283 5 1682 1246 160 0 0 chr1 143845403 143845597 -53349835 - Lx3C LINE L1 -375 6601 6408 5 1682 6309 142 18 1 chr1 143845757 143846778 -53348654 + Lx2 LINE L1 5706 6743 -254 5 1682 260 128 0 0 chr1 143847220 143847259 -53348173 - RLTR17 LTR ERVK -322 370 332 5 1682 291 175 0 0 chr1 143847452 143847509 -53347923 + (TATG)n Simple_repeat Simple_repeat 2 58 0 5 1682 268 382 20 34 chr1 143847588 143847737 -53347695 - B4A SINE B4 -10 282 136 5 1682 266 0 0 29 chr1 143847996 143848031 -53347401 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1682 288 0 0 0 chr1 143848164 143848196 -53347236 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1682 27 29 0 0 chr1 143848241 143848275 -53347157 + AT_rich Low_complexity Low_complexity 1 34 0 5 1682 310 169 265 0 chr1 143848502 143848585 -53346847 + RMER6C LTR ERVK 65 169 -521 5 1682 266 159 14 0 chr1 143848611 143848680 -53346752 + (CAGTT)n Simple_repeat Simple_repeat 1 70 0 5 1682 1093 120 38 0 chr1 143848742 143848925 -53346507 + RMER6C LTR ERVK 501 690 0 5 1682 243 0 0 0 chr1 143849159 143849186 -53346246 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1682 25 51 0 0 chr1 143849518 143849557 -53345875 + AT_rich Low_complexity Low_complexity 1 39 0 5 1682 500 302 16 68 chr1 143849736 143849928 -53345504 + B3A SINE B2 1 182 -16 5 1682 235 204 93 0 chr1 143849949 143850003 -53345429 + B3 SINE B2 153 211 -5 5 1682 347 354 26 57 chr1 143850192 143850384 -53345048 + B3A SINE B2 11 196 -2 5 1682 239 270 135 0 chr1 143852189 143852263 -53343169 - B1F SINE Alu -49 100 17 5 1682 1482 167 23 37 chr1 143852544 143852923 -53342509 + Lx2 LINE L1 6645 6997 -11 5 1682 836 70 0 8 chr1 143852987 143853117 -53342315 + (TTTTG)n Simple_repeat Simple_repeat 2 130 0 5 1682 1056 101 0 0 chr1 143853117 143853255 -53342177 - B1_Mus2 SINE Alu -9 138 1 5 1682 21 0 0 0 chr1 143853784 143853805 -53341627 + AT_rich Low_complexity Low_complexity 1 21 0 5 1682 226 322 24 47 chr1 143853850 143853977 -53341455 - Lx9 LINE L1 -204 7440 7317 5 1682 3446 88 2 4 chr1 143854006 143854499 -53340933 + L1_Mus4 LINE L1 6138 6629 -7 5 1682 214 333 45 124 chr1 143854601 143854779 -53340653 - B4 SINE B4 -123 169 6 5 1682 420 71 0 0 chr1 143856926 143856982 -53338450 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1682 665 208 16 0 chr1 143857286 143857411 -53338021 + B1_Mur4 SINE Alu 5 131 -19 5 1682 392 333 23 0 chr1 143858474 143858603 -53336829 - B3A SINE B2 -22 176 45 5 1682 1417 66 22 0 chr1 143859861 143860043 -53335389 + B2_Mm1a SINE B2 1 186 -7 5 1682 347 339 26 0 chr1 143860111 143860226 -53335206 - PB1D9 SINE Alu 0 120 3 5 1682 673 246 142 21 chr1 143861318 143861600 -53333832 - L1M3 LINE L1 -536 5764 5449 5 1682 322 213 44 44 chr1 143861711 143861824 -53333608 + Lx9 LINE L1 7489 7601 -43 5 1682 397 225 67 11 chr1 143861824 143862004 -53333428 + RMER17C LTR ERVK 88 277 -133 5 1682 527 107 0 12 chr1 143862006 143862091 -53333341 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 5 1682 348 273 100 67 chr1 143862244 143862501 -53332931 - L1M3 LINE L1 -807 5336 5051 5 1682 683 300 104 10 chr1 143862503 143863007 -53332425 - RMER1B Other Other -680 662 66 5 1682 297 364 141 18 chr1 143863192 143863469 -53331963 + Lx8 LINE L1 6964 7274 -199 5 1682 772 141 19 173 chr1 143863982 143864196 -53331236 + URR1A DNA MER1_type 46 226 0 5 1682 456 108 169 0 chr1 143864263 143864346 -53331086 + RMER15 LTR ERVL 301 397 -178 5 1682 291 104 0 0 chr1 143865829 143865877 -53329555 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1682 225 182 0 0 chr1 143865926 143865981 -53329451 + T-rich Low_complexity Low_complexity 1 55 0 5 1682 1046 70 0 0 chr1 143865981 143866123 -53329309 - B1_Mm SINE Alu 0 147 6 5 1682 1894 222 92 11 chr1 143866390 143866823 -53328609 + RMER1B Other Other 353 820 -246 5 1682 2415 95 7 15 chr1 143866823 143867194 -53328238 - MT2C_Mm LTR ERVL 0 475 1 5 1682 882 187 35 59 chr1 143867195 143867451 -53327981 + RMER1B Other Other 817 1066 0 5 1682 1807 309 26 64 chr1 143867452 143868474 -53326958 - Lx7 LINE L1 -1790 5906 4939 5 1682 6632 82 1 7 chr1 143868490 143869395 -53326037 + L1_Mus2 LINE L1 5667 6566 0 5 1682 249 57 0 0 chr1 143869411 143869446 -53325986 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1682 1381 107 5 0 chr1 143869509 143869714 -53325718 - L1_Mus2 LINE L1 -2 6564 6359 5 1682 621 261 142 5 chr1 143869753 143869957 -53325475 + Lx4B LINE L1 6823 7054 -4 5 1682 418 301 90 82 chr1 143869954 143870251 -53325181 - Lx7 LINE L1 -1011 4869 4569 5 1682 403 205 18 0 chr1 143870251 143870363 -53325069 - Lx9 LINE L1 -9 7635 7522 5 1682 418 301 90 82 chr1 143870363 143870442 -53324990 - Lx7 LINE L1 -1312 4568 4490 5 1682 180 0 0 0 chr1 143870681 143870701 -53324731 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1682 1564 40 15 0 chr1 143870704 143870904 -53324528 + L1_Mur1 LINE L1 3494 3696 -2190 5 1682 25 0 0 0 chr1 143872074 143872099 -53323333 + AT_rich Low_complexity Low_complexity 1 25 0 5 1682 540 359 29 25 chr1 143872457 143872700 -53322732 + B4A SINE B4 47 290 -2 5 1682 219 196 0 21 chr1 143872708 143872755 -53322677 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 5 1682 389 339 55 28 chr1 143872812 143872994 -53322438 - B4 SINE B4 -103 189 3 5 1682 216 225 11 43 chr1 143875514 143875607 -53319825 + (TATAA)n Simple_repeat Simple_repeat 3 92 0 5 1682 1396 77 0 5 chr1 143876619 143876815 -53318617 - L1_Mus2 LINE L1 0 6566 6372 5 1682 1776 230 95 11 chr1 143876819 143877272 -53318160 + RLTR28 LTR ERVL 18 508 -16 5 1682 692 352 35 12 chr1 143877305 143877564 -53317868 - B4A SINE B4 0 292 28 5 1682 404 343 95 41 chr1 143877853 143878096 -53317336 - MER34A1 LTR ERV1 -291 296 41 5 1682 2413 274 60 25 chr1 143878179 143878894 -53316538 - Lx6 LINE L1 -3 7457 6718 5 1682 2107 259 65 21 chr1 143878893 143879678 -53315754 + Lx6 LINE L1 5357 6162 -888 5 1682 188 286 47 23 chr1 143879771 143879857 -53315575 - L3 LINE CR1 -1618 2871 2784 6 1682 280 248 45 98 chr1 143880101 143880213 -53315219 + MT2B LTR ERVL 152 257 -344 6 1682 842 163 7 0 chr1 143880116 143880257 -53315175 + B1_Mus1 SINE Alu 7 148 0 6 1682 234 330 36 36 chr1 143880379 143880489 -53314943 + B4 SINE B4 8 117 -175 6 1682 434 215 0 101 chr1 143882168 143882186 -53313246 + MT2B LTR ERVL 151 156 -445 6 1682 819 46 0 0 chr1 143882186 143882295 -53313137 + B1_Mus2 SINE Alu 2 110 -37 6 1682 1110 187 111 0 chr1 143882339 143882574 -53312858 + Lx2 LINE L1 6081 6341 -656 6 1682 2365 147 67 18 chr1 143882613 143883049 -53312383 - Lx LINE L1 -2 6652 6196 6 1682 2873 138 13 2 chr1 143883049 143883506 -53311926 + Lx LINE L1 5718 6179 -475 6 1682 3905 138 9 11 chr1 143883526 143884177 -53311255 + Lx2 LINE L1 6348 6997 0 6 1682 188 86 0 28 chr1 143884333 143884369 -53311063 + (TTA)n Simple_repeat Simple_repeat 1 35 0 6 1682 359 132 0 0 chr1 143884761 143884808 -53310624 + L1_Mm LINE L1 5540 5586 -297 6 1682 7404 66 9 5 chr1 143884808 143885788 -53309644 + L1Md_F2 LINE L1 5587 6570 -12 6 1682 216 97 0 0 chr1 143885800 143885831 -53309601 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 6 1682 321 26 0 0 chr1 143886141 143886179 -53309253 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1682 268 310 35 17 chr1 143886221 143886336 -53309096 + MTEb LTR MaLR 3 119 -260 6 1682 1271 12 24 0 chr1 143886360 143886525 -53308907 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 6 1682 22 35 0 0 chr1 143888672 143888701 -53306731 + AT_rich Low_complexity Low_complexity 1 29 0 6 1682 360 0 0 0 chr1 143889137 143889177 -53306255 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1682 1144 64 0 0 chr1 143889178 143889319 -53306113 - B1_Mm SINE Alu -6 141 1 6 1682 13975 147 23 56 chr1 143889823 143891132 -53304300 + Lx3C LINE L1 3118 4390 -1496 6 1682 5263 28 0 0 chr1 143891132 143891745 -53303687 + L1Md_A LINE L1 5970 6582 0 6 1682 13975 155 19 38 chr1 143891745 143894385 -53301047 + Lx3C LINE L1 4391 6971 -5 6 1682 3182 51 2 10 chr1 143895130 143895529 -53299903 - MTA_Mm LTR MaLR 0 396 1 6 1682 249 197 0 0 chr1 143895592 143895658 -53299774 + T-rich Low_complexity Low_complexity 1 66 0 6 1682 3804 119 44 24 chr1 143895662 143896298 -53299134 - Lx2 LINE L1 -6 6991 6343 6 1682 33 25 0 0 chr1 143897998 143898038 -53297394 + AT_rich Low_complexity Low_complexity 1 40 0 6 1682 378 0 0 0 chr1 143898382 143898424 -53297008 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1682 559 307 10 21 chr1 143899076 143899269 -53296163 + Lx6 LINE L1 7259 7449 -11 6 1682 243 157 0 0 chr1 143899318 143899369 -53296063 + T-rich Low_complexity Low_complexity 1 51 0 6 1682 787 254 64 53 chr1 143899371 143899637 -53295795 - RLTR19 LTR ERVK -45 454 186 6 1682 273 325 8 8 chr1 143899770 143899888 -53295544 - Lx7 LINE L1 -1 7695 7578 6 1682 258 116 0 0 chr1 143899888 143899931 -53295501 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 6 1682 438 214 67 67 chr1 143899931 143900171 -53295261 - Lx7 LINE L1 -106 7590 7351 6 1682 22 56 0 0 chr1 143900228 143900264 -53295168 + AT_rich Low_complexity Low_complexity 1 36 0 6 1682 1446 64 0 0 chr1 143900696 143900883 -53294549 - L1_Mus1 LINE L1 0 6567 6381 6 1682 340 332 158 37 chr1 143901106 143901347 -53294085 - B4A SINE B4 -20 272 3 6 1682 474 336 33 27 chr1 143902408 143902558 -53292874 - B3A SINE B2 -22 176 26 6 1682 302 377 45 13 chr1 143902618 143902774 -53292658 + B2_Mm2 SINE B2 6 166 -29 6 1682 22 0 0 0 chr1 143902782 143902804 -53292628 + AT_rich Low_complexity Low_complexity 1 22 0 6 1682 371 21 21 0 chr1 143903392 143903440 -53291992 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1682 2295 223 40 4 chr1 143905565 143906115 -53289317 - L1_Mur3 LINE L1 -51 5829 5260 6 1682 496 236 125 19 chr1 143906765 143906925 -53288507 - B4 SINE B4 -111 181 5 6 1682 270 159 0 0 chr1 143907589 143907658 -53287774 + (TAA)n Simple_repeat Simple_repeat 3 71 0 6 1682 662 290 81 19 chr1 143907661 143907921 -53287511 - Lx3C LINE L1 -5 6971 6696 6 1682 549 247 48 0 chr1 143907920 143908086 -53287346 + Lx2B LINE L1 5992 6165 -835 6 1682 8938 165 36 51 chr1 143908086 143908789 -53286643 - RLTR22_Mur LTR ERVK 0 1848 1125 6 1682 1903 113 0 49 chr1 143908789 143909114 -53286318 + L1Md_F2 LINE L1 6274 6582 0 6 1682 8938 165 36 51 chr1 143909114 143909988 -53285444 - RLTR22_Mur LTR ERVK -724 1124 306 6 1682 1606 166 63 3 chr1 143909988 143910291 -53285141 - Lx LINE L1 -7 6647 6327 6 1682 8938 165 36 51 chr1 143910291 143910587 -53284845 - RLTR22_Mur LTR ERVK -1543 305 2 6 1682 644 226 127 14 chr1 143910588 143910808 -53284624 + Lx2B LINE L1 6161 6405 -595 6 1682 667 155 23 30 chr1 143910928 143911061 -53284371 + B1_Mur3 SINE Alu 18 149 0 6 1682 476 219 42 0 chr1 143911623 143911742 -53283690 + Lx3_Mus LINE L1 6885 7008 -1 6 1682 21 36 0 0 chr1 143911795 143911823 -53283609 + AT_rich Low_complexity Low_complexity 1 28 0 6 1682 544 277 82 24 chr1 143912102 143912415 -53283017 - MTD LTR MaLR 0 419 4 6 1682 23 0 0 0 chr1 143913112 143913135 -53282297 + AT_rich Low_complexity Low_complexity 1 23 0 6 1682 24 53 0 0 chr1 143913213 143913251 -53282181 + AT_rich Low_complexity Low_complexity 1 38 0 6 1682 1241 191 5 0 chr1 143914364 143914584 -53280848 - Lx5 LINE L1 -332 6322 6102 6 1682 3221 154 43 6 chr1 143914575 143915162 -53280270 - Lx5 LINE L1 -1132 5918 5311 6 1682 723 54 0 0 chr1 143915175 143915267 -53280165 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 6 1682 838 184 6 6 chr1 143915267 143915447 -53279985 + GA-rich Low_complexity Low_complexity 1 180 0 6 1682 1714 245 58 56 chr1 143915447 143915980 -53279452 - RLTR20B3 LTR ERVK -32 545 12 6 1682 376 132 0 68 chr1 143916905 143916978 -53278454 + L1_Mm LINE L1 5307 5374 -509 6 1683 21 36 0 0 chr1 143917662 143917690 -53277742 + AT_rich Low_complexity Low_complexity 1 28 0 6 1683 24 0 0 0 chr1 143918265 143918289 -53277143 + AT_rich Low_complexity Low_complexity 1 24 0 6 1683 3106 101 28 22 chr1 143918290 143918794 -53276638 - Lx3A LINE L1 -5 6976 6470 6 1683 2867 86 17 2 chr1 143918794 143919201 -53276231 - BGLII LTR ERVK -8 413 1 6 1683 4631 123 31 7 chr1 143919201 143919512 -53275920 - Lx3A LINE L1 -626 6355 6041 6 1683 234 0 0 0 chr1 143919512 143919538 -53275894 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 6 1683 4631 135 31 7 chr1 143919538 143919998 -53275434 - Lx3A LINE L1 -941 6040 5588 6 1683 4505 51 12 5 chr1 143919999 143920574 -53274858 - L1Md_F2 LINE L1 0 6582 6004 6 1683 5055 41 21 29 chr1 143920574 143920645 -53274787 + L1Md_F2 LINE L1 5231 5301 -582 6 1683 1173 48 7 0 chr1 143920645 143920790 -53274642 + B1_Mm SINE Alu 1 146 -1 6 1683 201 39 0 0 chr1 143920796 143920822 -53274610 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1683 5055 31 9 12 chr1 143920822 143921515 -53273917 + L1Md_F2 LINE L1 5302 5997 -585 6 1683 882 123 7 14 chr1 143921501 143921641 -53273791 - Lx3A LINE L1 -298 5588 5450 6 1683 458 354 21 7 chr1 143921641 143921786 -53273646 - RLTR21 LTR ERVK -1425 147 1 6 1683 24 53 0 0 chr1 143921796 143921834 -53273598 + AT_rich Low_complexity Low_complexity 1 38 0 6 1683 981 100 56 0 chr1 143922263 143922423 -53273009 + L1_Mus3 LINE L1 6467 6635 -3 6 1683 189 0 0 0 chr1 143922588 143922609 -53272823 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1683 189 107 0 0 chr1 143923170 143923198 -53272234 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1683 30 0 0 0 chr1 143923305 143923335 -53272097 + AT_rich Low_complexity Low_complexity 1 30 0 6 1683 283 245 52 127 chr1 143923887 143924060 -53271372 + RMER10A LTR ERVL 258 417 -25 6 1683 29 28 0 0 chr1 143924309 143924345 -53271087 + AT_rich Low_complexity Low_complexity 1 36 0 6 1683 3097 75 9 52 chr1 143924393 143924856 -53270576 - L1Md_F2 LINE L1 -1 6581 6139 6 1683 29 70 0 0 chr1 143925091 143925148 -53270284 + AT_rich Low_complexity Low_complexity 1 57 0 6 1683 268 289 68 43 chr1 143926078 143926241 -53269191 + L1MC2 LINE L1 4855 5021 -1125 6 1683 37963 42 0 3 chr1 143926299 143932610 -53262822 - L1Md_T LINE L1 -2 6583 196 6 1683 355 290 91 48 chr1 143932892 143933333 -53262099 + L1MC2 LINE L1 5433 5892 -452 6 1683 1576 205 110 20 chr1 143933698 143934142 -53261290 - RMER6C LTR ERVK -3 687 204 6 1683 7220 102 13 1 chr1 143934152 143935247 -53260185 - L1_Mus3 LINE L1 -5 6633 5519 6 1683 2167 166 33 9 chr1 143935241 143935690 -53259742 + L1_Mus3 LINE L1 5033 5492 -391 6 1683 660 238 129 40 chr1 143935693 143935894 -53259538 - RMER6C LTR ERVK -500 220 2 6 1683 459 301 72 1 chr1 143935958 143936149 -53259283 - Lx9 LINE L1 -599 7045 6725 6 1683 639 339 4 11 chr1 143936218 143936478 -53258954 - Lx9 LINE L1 -756 6888 6631 6 1683 213 218 55 0 chr1 143936543 143936598 -53258834 + (TATG)n Simple_repeat Simple_repeat 3 60 0 6 1683 3193 227 21 4 chr1 143937348 143938046 -53257386 - Lx3C LINE L1 -2 6974 6265 6 1683 1371 204 30 0 chr1 143938046 143938315 -53257117 - RMER6C LTR ERVK -413 277 1 6 1683 1945 252 40 8 chr1 143938795 143939268 -53256164 - RLTR18B LTR ERVK -10 502 15 6 1683 3381 172 28 90 chr1 143939814 143940288 -53255144 + Lx4B LINE L1 5113 5565 -312 6 1683 5895 118 9 7 chr1 143940288 143941173 -53254259 + Lx LINE L1 5768 6654 0 6 1683 6573 172 28 90 chr1 143941173 143941258 -53254174 + Lx4B LINE L1 5566 5613 -1445 6 1683 375 23 0 0 chr1 143941258 143941302 -53254130 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1683 6573 188 70 10 chr1 143941302 143942645 -53252787 + Lx4B LINE L1 5614 7038 -20 6 1683 240 35 0 0 chr1 143942645 143942674 -53252758 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1683 21 36 0 0 chr1 143942898 143942926 -53252506 + AT_rich Low_complexity Low_complexity 1 28 0 6 1683 3966 45 12 14 chr1 143944323 143944817 -53250615 + MT2_Mm LTR ERVL 1 493 0 6 1683 230 287 62 0 chr1 143944844 143944973 -53250459 + L1M2 LINE L1 5645 5781 -510 6 1683 544 216 0 22 chr1 143945097 143945234 -53250198 + Lx2 LINE L1 6826 6959 -38 6 1683 995 328 63 24 chr1 143945449 143946033 -53249399 - Lx9 LINE L1 -380 7264 6658 6 1683 27 0 0 0 chr1 143946101 143946128 -53249304 + AT_rich Low_complexity Low_complexity 1 27 0 6 1683 360 0 0 0 chr1 143946151 143946191 -53249241 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 6 1683 1873 176 47 8 chr1 143946297 143946659 -53248773 - ORR1B1 LTR MaLR -18 376 1 6 1683 2401 92 0 0 chr1 143947078 143947395 -53248037 + L1Md_F2 LINE L1 5938 6254 -328 6 1683 275 169 76 15 chr1 143947395 143947461 -53247971 - B3A SINE B2 -127 71 2 6 1683 754 58 0 10 chr1 143947461 143947550 -53247882 - MT2C_Mm LTR ERVL -387 88 1 6 1683 1202 242 27 57 chr1 143947588 143947921 -53247511 + Lx6 LINE L1 7136 7458 -2 7 1683 25 31 0 0 chr1 143948382 143948414 -53247018 + AT_rich Low_complexity Low_complexity 1 32 0 7 1683 999 300 84 20 chr1 143949352 143950164 -53245268 + L1M2 LINE L1 3767 4630 -1513 7 1683 461 17 17 0 chr1 143950595 143950653 -53244779 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1683 1199 315 122 36 chr1 143950653 143951268 -53244164 - Lx8 LINE L1 -143 7330 6663 7 1683 188 344 0 0 chr1 143951908 143951969 -53243463 - L2a LINE L2 -258 3168 3108 7 1683 21 0 0 0 chr1 143952343 143952364 -53243068 + AT_rich Low_complexity Low_complexity 1 21 0 7 1683 632 341 12 8 chr1 143952540 143952788 -53242644 - Lx6 LINE L1 -27 7433 7185 7 1683 904 177 95 33 chr1 143952809 143953019 -53242413 + L1_Mur2 LINE L1 2282 2504 -3373 7 1683 294 29 0 0 chr1 143953131 143953166 -53242266 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1683 1127 82 0 0 chr1 143953166 143953313 -53242119 - B1_Mus1 SINE Alu 0 148 2 7 1683 9181 119 45 15 chr1 143953562 143955757 -53239675 - L1_Mur1 LINE L1 -3321 2565 3 7 1683 614 288 138 28 chr1 143956196 143956540 -53238892 + L1MA4A LINE L1 5412 5786 -517 7 1683 402 21 0 0 chr1 143956540 143956587 -53238845 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1683 279 0 0 0 chr1 143956587 143956617 -53238815 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1683 614 243 125 2 chr1 143956617 143956741 -53238691 + L1MA4A LINE L1 5787 5936 -220 7 1683 2736 194 118 36 chr1 143957188 143957852 -53237580 - RMER6D LTR ERVK 0 720 3 7 1683 2097 275 19 14 chr1 143958854 143959429 -53236003 - Lx6 LINE L1 -4 7456 6879 7 1683 564 162 0 0 chr1 143959429 143959534 -53235898 + CT-rich Low_complexity Low_complexity 1 105 0 7 1683 1508 217 138 38 chr1 143960643 143961152 -53234280 + RMER20B LTR ERVK 1 616 -11 7 1683 369 162 0 0 chr1 143961228 143961296 -53234136 + GA-rich Low_complexity Low_complexity 3 70 0 7 1683 1070 102 0 0 chr1 143961587 143961734 -53233698 + B1_Mus1 SINE Alu 2 148 0 7 1683 23 54 0 0 chr1 143961819 143961856 -53233576 + AT_rich Low_complexity Low_complexity 1 37 0 7 1683 31 76 0 0 chr1 143961922 143961988 -53233444 + AT_rich Low_complexity Low_complexity 1 66 0 7 1683 195 114 0 0 chr1 143962027 143962062 -53233370 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1683 1343 174 78 81 chr1 143962201 143962521 -53232911 + ORR1A4 LTR MaLR 1 319 -10 7 1683 305 145 16 0 chr1 143962575 143962637 -53232795 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1683 233 267 58 22 chr1 143962782 143962920 -53232512 + L1M3 LINE L1 5107 5249 -891 7 1683 510 296 130 6 chr1 143962959 143963136 -53232296 - ORR1D1 LTR MaLR -104 270 72 7 1683 6210 64 7 10 chr1 143963338 143964153 -53231279 + L1Md_F2 LINE L1 5760 6572 -10 7 1683 757 320 84 13 chr1 143964531 143964923 -53230509 - Lx8 LINE L1 -351 7122 6703 7 1683 296 222 0 14 chr1 143964935 143965008 -53230424 - ORR1C1 LTR MaLR -2 365 294 7 1683 1644 26 0 0 chr1 143965068 143965258 -53230174 + B2_Mm1a SINE B2 2 191 -2 7 1683 364 276 146 47 chr1 143965315 143965414 -53230018 - ORR1C1 LTR MaLR -61 313 192 7 1683 786 75 0 0 chr1 143965414 143965520 -53229912 + (TA)n Simple_repeat Simple_repeat 1 106 0 7 1683 420 20 0 0 chr1 143965520 143965568 -53229864 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1683 382 285 275 38 chr1 143965568 143965729 -53229703 - ORR1C1 LTR MaLR -183 191 6 7 1683 265 303 0 0 chr1 143965948 143966014 -53229418 + CT-rich Low_complexity Low_complexity 5 70 0 7 1683 428 330 65 45 chr1 143966185 143966385 -53229047 - Lx8 LINE L1 -810 6663 6460 7 1683 257 353 92 26 chr1 143968632 143968905 -53226527 - ORR1D2 LTR MaLR -2 368 78 7 1683 732 259 87 49 chr1 143969264 143969470 -53225962 - Lx7 LINE L1 -3 7693 7485 7 1683 240 35 0 0 chr1 143969470 143969499 -53225933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1683 732 259 87 49 chr1 143969499 143969658 -53225774 - Lx7 LINE L1 -212 7484 7314 7 1683 1000 290 19 16 chr1 143969692 143970007 -53225425 - Lx7 LINE L1 -364 7332 7017 7 1683 733 203 30 10 chr1 143969986 143970185 -53225247 - L1_Mur3 LINE L1 -1736 4144 3942 7 1683 2012 96 3 23 chr1 143970185 143970485 -53224947 - MMERGLN-int LTR ERV1 -7262 294 1 7 1683 3841 66 6 0 chr1 143970485 143970985 -53224447 - RLTR1C LTR ERV1 0 503 1 7 1683 1418 211 63 61 chr1 143971028 143971391 -53224041 - ORR1B2 LTR MaLR -3 364 1 7 1683 683 197 28 11 chr1 143971399 143971579 -53223853 - L1_Mur3 LINE L1 -2564 3316 3134 7 1683 254 100 0 0 chr1 143971576 143971616 -53223816 + L1_Mm LINE L1 4257 4296 -1587 7 1683 443 121 84 0 chr1 143971610 143971693 -53223739 - L1_Mur3 LINE L1 -2992 2888 2799 7 1683 536 239 51 0 chr1 143971682 143971820 -53223612 - L1_Mur3 LINE L1 -3305 2575 2431 7 1683 1159 228 96 16 chr1 143971801 143972104 -53223328 + Lx6 LINE L1 7108 7434 -26 7 1683 623 204 34 23 chr1 143972108 143972284 -53223148 - L1_Mur3 LINE L1 -3460 2420 2243 7 1683 3134 270 52 11 chr1 143972308 143973138 -53222294 - Lx5 LINE L1 -9 7041 6178 7 1683 2486 218 66 91 chr1 143973137 143973371 -53222061 - L1_Mur3 LINE L1 -3649 2231 2058 7 1683 282 73 0 0 chr1 143973371 143973412 -53222020 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1683 2727 229 66 70 chr1 143973412 143975076 -53220356 - L1_Mur3 LINE L1 -3823 2057 303 7 1683 1937 295 81 141 chr1 143975879 143976143 -53219289 - Lx5 LINE L1 -36 7014 6742 7 1683 371 21 21 0 chr1 143976143 143976191 -53219241 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1683 1937 295 81 141 chr1 143976191 143976655 -53218777 - Lx5 LINE L1 -309 6741 6382 7 1683 3864 78 4 4 chr1 143976655 143977186 -53218246 - L1Md_F2 LINE L1 0 6582 6071 7 1683 1937 268 82 107 chr1 143977186 143977779 -53217653 - Lx5 LINE L1 -669 6381 5767 7 1683 612 278 85 96 chr1 143977781 143978250 -53217182 + RMER13A LTR ERVK 1 464 -396 7 1683 308 292 112 26 chr1 143978606 143978722 -53216710 + RMER12 LTR ERVK 1195 1320 -2 7 1683 1958 172 83 24 chr1 143978737 143979242 -53216190 - L1_Mur2 LINE L1 -2929 2948 2414 7 1683 667 313 70 45 chr1 143979251 143979565 -53215867 - Lx8 LINE L1 -705 6768 6447 7 1683 250 359 68 8 chr1 143980065 143980183 -53215249 - Lx8 LINE L1 -1030 6443 6319 7 1683 297 263 109 8 chr1 143980324 143980481 -53214951 - Lx8 LINE L1 -1689 5955 5783 7 1683 2938 40 0 0 chr1 143980487 143980833 -53214599 - ORR1A1 LTR MaLR 0 346 1 7 1683 10699 90 19 124 chr1 143980833 143982836 -53212596 - ORR1A1-int LTR MaLR 0 1792 1 7 1683 412 56 19 0 chr1 143982836 143982890 -53212542 - ORR1A1 LTR MaLR 0 346 292 7 1683 7657 59 3 3 chr1 143982890 143984058 -53211374 - L1Md_F3 LINE L1 -18 6566 5399 7 1683 5377 39 0 0 chr1 143984054 143984716 -53210716 - L1Md_F3 LINE L1 -1228 4655 3994 7 1683 890 108 0 0 chr1 143984706 143984836 -53210596 + L1_Mus1 LINE L1 5898 6027 -540 7 1683 237 293 78 29 chr1 143985272 143985374 -53210058 - LTR40a LTR ERVL -315 204 98 7 1683 219 223 10 69 chr1 143985568 143985669 -53209763 + T-rich Low_complexity Low_complexity 4 98 0 7 1683 823 174 28 0 chr1 143985673 143985817 -53209615 - B1_Mus1 SINE Alu 0 148 1 7 1683 273 230 16 26 chr1 143985864 143985947 -53209485 + RLTR18B LTR ERVK 13 90 -526 7 1683 198 0 0 0 chr1 143985948 143985970 -53209462 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1683 8177 30 0 0 chr1 143986009 143986967 -53208465 - L1Md_T LINE L1 0 6582 5625 7 1683 411 306 80 46 chr1 143987151 143987566 -53207866 - L1MB4 LINE L1 -103 6077 5649 7 1683 231 279 25 25 chr1 143987600 143987681 -53207751 + L1MB3 LINE L1 6074 6154 -29 7 1683 342 80 0 0 chr1 143988013 143988063 -53207369 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1683 313 250 100 0 chr1 143988150 143988270 -53207162 + L1MA6 LINE L1 6143 6274 -26 7 1683 1941 250 39 7 chr1 143988327 143988742 -53206690 + RLTR18B LTR ERVK 82 509 -3 7 1683 24 67 0 0 chr1 143989265 143989310 -53206122 + AT_rich Low_complexity Low_complexity 1 45 0 7 1683 23 33 0 0 chr1 143989862 143989892 -53205540 + AT_rich Low_complexity Low_complexity 1 30 0 7 1683 397 331 61 70 chr1 143990393 143990705 -53204727 - ORR1E LTR MaLR -48 311 3 7 1683 519 17 0 0 chr1 143990846 143990906 -53204526 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 7 1683 558 43 0 0 chr1 143990907 143990976 -53204456 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1683 23 54 0 0 chr1 143991648 143991685 -53203747 + AT_rich Low_complexity Low_complexity 1 37 0 7 1683 764 166 55 0 chr1 143991919 143992064 -53203368 + ORR1A3-int LTR MaLR 552 704 -1259 7 1683 609 197 101 14 chr1 143991984 143992123 -53203309 + MT2B LTR ERVL 14 164 -437 7 1683 2651 50 0 0 chr1 143992133 143992471 -53202961 + ORR1A1 LTR MaLR 1 338 -8 7 1683 1394 176 169 9 chr1 143992593 143992925 -53202507 - ORR1A4-int LTR MaLR -1577 386 2 7 1683 1622 195 18 21 chr1 143992926 143993256 -53202176 - ORR1A4 LTR MaLR 0 329 1 7 1683 524 320 0 72 chr1 143993269 143993464 -53201968 - B3A SINE B2 -16 182 2 7 1683 581 276 42 30 chr1 143993717 143993885 -53201547 + MER5B DNA MER1_type 9 178 0 7 1683 659 235 59 0 chr1 143994159 143994329 -53201103 + Lx9 LINE L1 7244 7423 -221 7 1683 286 271 0 0 chr1 143994386 143994445 -53200987 + MLT1J1 LTR MaLR 70 128 -316 7 1683 5349 152 50 2 chr1 143995267 143996189 -53199243 + L1VL2 LINE L1 72 1037 -5298 7 1683 16929 180 24 16 chr1 143996174 143996773 -53198659 + L1_Mur1 LINE L1 2226 2818 -3068 7 1683 2888 29 3 3 chr1 143996773 143997119 -53198313 - ORR1A0 LTR MaLR 0 346 1 7 1683 16929 180 24 16 chr1 143997119 144000000 -53195432 + L1_Mur1 LINE L1 2819 5735 -151 7 1683 5573 128 36 12 chr1 144000000 144000893 -53194539 + Lx LINE L1 5733 6646 -8 1 1683 31 0 0 0 chr1 144000950 144000981 -53194451 + AT_rich Low_complexity Low_complexity 1 31 0 2 1683 2803 113 19 0 chr1 144001368 144001785 -53193647 + Lx3A LINE L1 6544 6968 -13 3 1683 26 64 0 0 chr1 144001785 144001832 -53193600 + AT_rich Low_complexity Low_complexity 1 47 0 4 1683 29 84 0 0 chr1 144001893 144001964 -53193468 + AT_rich Low_complexity Low_complexity 1 71 0 5 1683 903 320 96 9 chr1 144001967 144002301 -53193131 + MTE2a LTR MaLR 17 379 0 6 1683 332 327 104 61 chr1 144002430 144002642 -53192790 - MTE-int LTR MaLR -1342 238 18 7 1683 336 382 29 0 chr1 144002856 144002992 -53192440 - ORR1E LTR MaLR -219 140 1 8 1683 407 314 92 28 chr1 144003140 144003281 -53192151 + B4A SINE B4 137 286 -6 9 1683 2285 170 7 21 chr1 144003333 144003753 -53191679 + Lx3A LINE L1 6538 6951 -30 1 1683 4399 111 8 5 chr1 144003753 144004406 -53191026 + L1_Mus3 LINE L1 5976 6630 -8 1 1683 21 0 0 0 chr1 144004408 144004429 -53191003 + AT_rich Low_complexity Low_complexity 1 21 0 1 1683 672 284 66 36 chr1 144004588 144005010 -53190422 + L1MA5 LINE L1 5417 5845 -455 1 1683 510 17 0 0 chr1 144005166 144005225 -53190207 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1683 584 180 90 0 chr1 144005379 144005490 -53189942 + ETnERV2-int LTR ERVK 7070 7190 -216 1 1683 1932 245 44 52 chr1 144005915 144006418 -53189014 - RMER15 LTR ERVL -5 570 72 1 1683 262 259 0 23 chr1 144006631 144006718 -53188714 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1683 298 279 73 31 chr1 144007745 144007863 -53187569 - PB1D10 SINE Alu 0 149 23 1 1683 28 48 0 0 chr1 144008227 144008269 -53187163 + AT_rich Low_complexity Low_complexity 1 42 0 1 1683 1512 290 30 32 chr1 144008704 144009200 -53186232 - RLTR20B2 LTR ERVK -15 545 51 2 1683 22 56 0 0 chr1 144010758 144010794 -53184638 + AT_rich Low_complexity Low_complexity 1 36 0 2 1683 317 62 21 0 chr1 144011088 144011136 -53184296 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 1683 1032 67 7 0 chr1 144011136 144011271 -53184161 - B1_Mus1 SINE Alu -11 137 2 2 1683 492 62 0 0 chr1 144011721 144011785 -53183647 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1683 5115 213 34 45 chr1 144012311 144013310 -53182122 + L1_Mur2 LINE L1 1833 2778 -3099 2 1683 2355 67 21 12 chr1 144013310 144013643 -53181789 - L1Md_F2 LINE L1 0 6582 6247 2 1683 5115 213 34 45 chr1 144013643 144014163 -53181269 + L1_Mur2 LINE L1 2779 3334 -2543 2 1683 4180 99 3 3 chr1 144014160 144014767 -53180665 - L1_Mus2 LINE L1 -410 5473 4867 2 1683 7174 82 28 0 chr1 144014759 144015597 -53179835 + L1_Mus2 LINE L1 5465 6345 -221 2 1683 195 42 0 0 chr1 144015597 144015621 -53179811 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 2 1683 7174 73 25 0 chr1 144015621 144015838 -53179594 + L1_Mus2 LINE L1 6346 6563 -3 2 1683 202 61 61 0 chr1 144015844 144015877 -53179555 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1683 3633 194 20 14 chr1 144015879 144016690 -53178742 + L1_Mur2 LINE L1 3314 4129 -1748 2 1683 23 54 0 0 chr1 144016785 144016822 -53178610 + AT_rich Low_complexity Low_complexity 1 37 0 3 1683 212 184 0 0 chr1 144017539 144017577 -53177855 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1683 25 0 0 0 chr1 144017884 144017909 -53177523 + AT_rich Low_complexity Low_complexity 1 25 0 3 1683 234 62 0 0 chr1 144018388 144018420 -53177012 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1683 524 177 79 16 chr1 144018628 144018754 -53176678 + RMER6B LTR ERVK 1 134 -327 3 1683 261 0 0 0 chr1 144018927 144018956 -53176476 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1683 3967 91 55 3 chr1 144019039 144019603 -53175829 - L1Md_F2 LINE L1 0 6582 5990 3 1683 12653 68 3 10 chr1 144019603 144021320 -53174112 + L1Md_F2 LINE L1 3826 5530 -353 3 1683 902 55 86 8 chr1 144021320 144021448 -53173984 - RLTR45 LTR ERVK 0 482 345 3 1683 687 33 44 0 chr1 144021440 144021530 -53173902 + RLTR45 LTR ERVK 389 482 0 3 1683 1090 65 0 0 chr1 144022769 144022907 -53172525 - RLTR45-int LTR ERVK -6426 818 681 3 1683 4832 76 49 15 chr1 144023207 144023876 -53171556 - RLTR45-int LTR ERVK -6552 692 1 3 1683 2697 82 62 123 chr1 144023876 144024389 -53171043 - RLTR45 LTR ERVK 0 482 1 3 1683 3283 57 16 0 chr1 144024389 144024868 -53170564 + L1Md_F2 LINE L1 5525 6010 -572 3 1683 488 200 9 19 chr1 144024871 144024978 -53170454 + RMER6B LTR ERVK 355 460 -1 4 1683 791 145 0 57 chr1 144025582 144025758 -53169674 - Lx2 LINE L1 0 6997 6832 4 1683 889 54 39 0 chr1 144025837 144025966 -53169466 + (GAAAA)n Simple_repeat Simple_repeat 4 137 0 4 1683 854 108 47 7 chr1 144027380 144027529 -53167903 + Lx2 LINE L1 6842 6996 -1 4 1683 831 198 24 30 chr1 144027686 144027853 -53167579 + MTB_Mm LTR MaLR 20 185 -222 4 1683 294 332 19 61 chr1 144027901 144028113 -53167319 + Lx9 LINE L1 6958 7160 -484 4 1683 450 246 44 42 chr1 144028141 144028290 -53167142 + RMER20B LTR ERVK 7 161 -355 4 1683 367 281 165 18 chr1 144028771 144028941 -53166491 + MERVK26-int LTR ERVK 154 348 -6571 4 1683 414 295 33 27 chr1 144029784 144029934 -53165498 + MERVK26-int LTR ERVK 1343 1493 -5426 4 1683 245 210 0 16 chr1 144030292 144030355 -53165077 + GA-rich Low_complexity Low_complexity 1 62 0 4 1683 1161 118 0 0 chr1 144030357 144030535 -53164897 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 1683 1109 68 0 43 chr1 144030549 144030734 -53164698 + (GAAAA)n Simple_repeat Simple_repeat 2 178 0 5 1683 710 364 55 46 chr1 144031492 144032826 -53162606 + MERVK26-int LTR ERVK 2747 3975 -2944 4 1683 501 153 47 0 chr1 144032949 144033034 -53162398 + ORR1B1 LTR MaLR 301 389 -5 5 1683 1313 197 38 13 chr1 144033152 144033472 -53161960 + ORR1B1 LTR MaLR 1 394 0 5 1683 8086 197 35 82 chr1 144033473 144035531 -53159901 + ORR1B1-int LTR MaLR 2 1963 0 5 1683 1673 213 26 20 chr1 144035538 144035888 -53159544 + ORR1B1 LTR MaLR 41 392 -2 5 1683 1000 338 48 32 chr1 144036138 144036866 -53158566 + MERVK26-int LTR ERVK 4471 5210 -1709 4 1683 411 332 63 22 chr1 144036974 144037242 -53158190 + Lx8 LINE L1 6393 6671 -802 5 1683 527 296 66 0 chr1 144037290 144037442 -53157990 - MTD LTR MaLR -257 162 1 5 1683 969 304 93 31 chr1 144037622 144038074 -53157358 + Lx8 LINE L1 6989 7468 -5 5 1683 250 222 0 0 chr1 144038253 144038298 -53157134 + Lx8 LINE L1 7278 7322 -151 5 1683 231 354 0 0 chr1 144038295 144038408 -53157024 - L1M5 LINE L1 -1077 5069 4957 5 1683 232 250 0 16 chr1 144038437 144038498 -53156934 + L1M3 LINE L1 5338 5397 -743 5 1683 215 0 0 62 chr1 144038567 144038599 -53156833 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 5 1683 22 35 0 0 chr1 144038839 144038868 -53156564 + AT_rich Low_complexity Low_complexity 1 29 0 5 1683 183 114 0 0 chr1 144039156 144039191 -53156241 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1683 22 35 0 0 chr1 144039304 144039333 -53156099 + AT_rich Low_complexity Low_complexity 1 29 0 6 1683 45 0 0 0 chr1 144039388 144039433 -53155999 + AT_rich Low_complexity Low_complexity 1 45 0 6 1683 311 417 12 18 chr1 144039456 144039622 -53155810 - RSINE1 SINE B4 0 165 1 6 1683 738 190 182 14 chr1 144039631 144039734 -53155698 - Lx7 LINE L1 0 7696 7579 6 1683 706 112 111 7 chr1 144039734 144039887 -53155545 + Lx2A LINE L1 6840 7008 0 6 1683 738 190 182 14 chr1 144039887 144039997 -53155435 - Lx7 LINE L1 -118 7578 7448 6 1683 498 299 35 0 chr1 144040008 144040152 -53155280 - B1_Mur2 SINE Alu 0 149 1 6 1683 2114 201 21 6 chr1 144040312 144040787 -53154645 - L1_Mur2 LINE L1 -447 5430 4949 6 1683 5158 120 34 9 chr1 144040787 144041593 -53153839 + L1_Mus4 LINE L1 5806 6631 -5 6 1683 2821 58 0 3 chr1 144041590 144041951 -53153481 + L1Md_F3 LINE L1 6211 6570 -14 6 1683 275 162 39 2 chr1 144042254 144042325 -53153107 - Lx3A LINE L1 -8 7001 6910 7 1683 500 353 31 18 chr1 144042325 144042550 -53152882 - RMER15 LTR ERVL -2 573 346 7 1683 432 0 0 0 chr1 144044114 144044162 -53151270 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1683 1941 165 16 3 chr1 144044452 144044828 -53150604 - L1_Mur2 LINE L1 -1286 4591 4211 7 1683 590 155 178 0 chr1 144044891 144045020 -53150412 + RMER6C LTR ERVK 467 618 -72 7 1683 7011 113 21 8 chr1 144045020 144046154 -53149278 - L1VL4 LINE L1 -641 2918 1770 7 1683 6726 160 12 4 chr1 144046153 144047906 -53147526 + Lx LINE L1 4886 6653 -1 7 210 5336 110 30 8 chr1 144047924 144048342 -53147090 - L1VL4 LINE L1 -1797 1762 1342 7 1684 222 37 0 0 chr1 144048342 144048369 -53147063 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1684 5959 132 37 3 chr1 144048369 144049834 -53145598 - L1VL4 LINE L1 -2218 1341 2 7 1684 1182 61 0 0 chr1 144049881 144050028 -53145404 + B1_Mus1 SINE Alu 2 148 0 7 1684 475 221 136 15 chr1 144050082 144050218 -53145214 - L1_Mur3 LINE L1 -862 5015 4865 7 1684 4422 233 43 27 chr1 144050211 144051612 -53143820 - L1_Mur3 LINE L1 -1189 4691 3269 7 1684 386 344 43 39 chr1 144051759 144052016 -53143416 - MT2A LTR ERVL -69 464 207 8 1684 291 333 45 26 chr1 144052038 144052192 -53143240 - MT2A LTR ERVL -304 229 73 8 1684 1060 299 89 96 chr1 144052297 144052911 -53142521 + RCHARR1 DNA MER1_type 2 597 -377 8 1684 1463 181 7 11 chr1 144052911 144053195 -53142237 + Lx3C LINE L1 6685 6967 -9 8 1684 1060 299 89 96 chr1 144053195 144053426 -53142006 + RCHARR1 DNA MER1_type 598 841 -133 8 1684 791 281 78 123 chr1 144053426 144053500 -53141932 - RMER1B Other Other -26 1040 940 8 1684 477 0 0 0 chr1 144053500 144053553 -53141879 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1684 1066 244 55 92 chr1 144053553 144054161 -53141271 - RMER1A Other Other -127 939 71 8 1684 1086 263 50 21 chr1 144055028 144055412 -53140020 - L1_Mur3 LINE L1 -731 5149 4755 8 1684 1226 307 94 30 chr1 144055413 144056337 -53139095 + Lx7 LINE L1 5439 6412 -1284 8 1684 27 81 0 0 chr1 144057506 144057568 -53137864 + AT_rich Low_complexity Low_complexity 1 62 0 8 1684 21 36 0 0 chr1 144057575 144057603 -53137829 + AT_rich Low_complexity Low_complexity 1 28 0 8 1684 25 0 0 0 chr1 144057771 144057796 -53137636 + AT_rich Low_complexity Low_complexity 1 25 0 8 1684 647 353 32 16 chr1 144057824 144058262 -53137170 - L1MA4 LINE L1 -377 5923 5479 9 1684 429 20 0 0 chr1 144058262 144058312 -53137120 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1684 1725 146 3 20 chr1 144058325 144058626 -53136806 - Lx LINE L1 -4 6650 6355 9 1684 418 393 0 0 chr1 144058988 144059123 -53136309 - RSINE1 SINE B4 -17 148 14 9 1684 21 36 0 0 chr1 144059616 144059644 -53135788 + AT_rich Low_complexity Low_complexity 1 28 0 9 1684 1451 239 69 54 chr1 144059644 144060180 -53135252 - Lx7 LINE L1 -4 7692 7149 9 1684 2661 276 53 6 chr1 144060256 144060985 -53134447 + Lx7 LINE L1 6065 6828 -868 9 1684 247 231 15 15 chr1 144061373 144061439 -53133993 + CT-rich Low_complexity Low_complexity 2 67 0 9 1684 315 229 0 103 chr1 144061790 144061868 -53133564 + ID_B1 SINE B4 115 184 -40 9 1684 324 119 0 0 chr1 144061993 144062052 -53133380 + (ATG)n Simple_repeat Simple_repeat 2 60 0 9 1684 299 344 62 10 chr1 144062320 144062417 -53133015 + B4A SINE B4 1 102 -190 1 1684 720 297 76 30 chr1 144063619 144063921 -53131511 + MER57C2 LTR ERV1 48 363 -71 1 1684 29 47 0 0 chr1 144064090 144064133 -53131299 + AT_rich Low_complexity Low_complexity 1 43 0 1 1684 213 340 0 45 chr1 144064407 144064518 -53130914 + B1F2 SINE Alu 24 129 -20 1 1684 21 36 0 0 chr1 144064712 144064740 -53130692 + AT_rich Low_complexity Low_complexity 1 28 0 1 1684 571 366 35 9 chr1 144066368 144066597 -53128835 - B4A SINE B4 -57 235 1 1 1684 21 0 0 0 chr1 144069403 144069424 -53126008 + AT_rich Low_complexity Low_complexity 1 21 0 1 1684 602 246 48 150 chr1 144069549 144069938 -53125494 - MT2B LTR ERVL -47 554 99 1 1684 1687 142 43 46 chr1 144069966 144070292 -53125140 + Lx LINE L1 6330 6654 0 1 1684 202 236 18 18 chr1 144070400 144070456 -53124976 + GA-rich Low_complexity Low_complexity 5 60 0 1 1684 1050 87 0 0 chr1 144070740 144070878 -53124554 + B1_Mm SINE Alu 1 138 -9 1 1684 1085 268 76 23 chr1 144071893 144072237 -53123195 - Lx6 LINE L1 -63 7397 7036 1 1684 844 303 9 66 chr1 144072244 144072576 -53122856 - Lx6 LINE L1 -630 6830 6518 1 1684 462 214 18 0 chr1 144072587 144072699 -53122733 + L1_Mur2 LINE L1 4509 4622 -1255 1 1684 735 362 60 6 chr1 144072881 144073364 -53122068 + Lx8 LINE L1 6521 7029 -444 1 1684 259 276 39 26 chr1 144073443 144073521 -53121911 + RMER12 LTR ERVK 735 813 -509 1 1684 1041 115 0 0 chr1 144073817 144073965 -53121467 + B1_Mus1 SINE Alu 1 148 0 1 1684 320 268 22 80 chr1 144073974 144074112 -53121320 + HAL1b LINE L1 504 633 -1376 1 1684 2396 104 33 3 chr1 144075025 144075392 -53120040 - L1_Mus3 LINE L1 -4 6634 6257 1 1684 326 319 52 75 chr1 144075624 144075760 -53119672 + MTD LTR MaLR 211 381 -38 1 1684 333 102 0 0 chr1 144076399 144076458 -53118974 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 1684 651 283 95 33 chr1 144076538 144077020 -53118412 + L1M2 LINE L1 3424 3935 -2208 1 1684 297 0 0 0 chr1 144077027 144077060 -53118372 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1684 417 360 35 24 chr1 144077063 144077353 -53118079 + L1M2 LINE L1 4015 4307 -1836 1 1684 521 356 70 45 chr1 144077408 144077922 -53117510 + L1M2 LINE L1 4535 5061 -1082 1 1684 771 261 51 37 chr1 144078046 144078340 -53117092 - L1_Rod LINE L1 -240 5607 5310 1 1684 710 341 41 11 chr1 144078343 144078613 -53116819 + Lx6 LINE L1 7156 7433 -27 1 1684 751 169 0 11 chr1 144078791 144078970 -53116462 + CT-rich Low_complexity Low_complexity 2 178 0 1 1684 557 45 45 0 chr1 144079192 144079281 -53116151 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1684 312 48 0 0 chr1 144079286 144079328 -53116104 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1 1684 896 334 119 72 chr1 144079394 144080415 -53115017 + Lx9 LINE L1 6405 7473 -171 1 1684 231 196 0 0 chr1 144080417 144080463 -53114969 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1684 28 71 0 0 chr1 144080572 144080628 -53114804 + AT_rich Low_complexity Low_complexity 1 56 0 1 1684 342 326 16 113 chr1 144080657 144080845 -53114587 + B3A SINE B2 45 214 -2 1 1684 237 331 108 0 chr1 144080984 144081123 -53114309 + L1_Mur3 LINE L1 5355 5508 -372 1 1684 251 225 186 70 chr1 144082266 144082372 -53113060 + MTD LTR MaLR 264 384 -37 1 1684 6034 46 16 1 chr1 144082372 144083132 -53112300 - L1Md_F3 LINE L1 0 6584 5814 1 1684 251 231 60 103 chr1 144083132 144083154 -53112278 + MTD LTR MaLR 383 405 -14 1 1684 23 0 0 0 chr1 144084510 144084533 -53110899 + AT_rich Low_complexity Low_complexity 1 23 0 1 1684 255 452 39 20 chr1 144085958 144086161 -53109271 + LTR16A LTR ERVL 109 315 -136 1 1684 479 126 63 0 chr1 144086351 144086510 -53108922 + (TA)n Simple_repeat Simple_repeat 1 169 0 1 1684 222 237 26 0 chr1 144086529 144086605 -53108827 + T-rich Low_complexity Low_complexity 6 83 0 1 1684 556 293 184 24 chr1 144086693 144087329 -53108103 - L1_Mur3 LINE L1 -467 5413 4676 1 1684 943 71 7 41 chr1 144087413 144087560 -53107872 - L1_Mus2 LINE L1 0 6566 6425 1 1684 276 100 0 0 chr1 144087573 144087613 -53107819 + (GGAGAA)n Simple_repeat Simple_repeat 5 44 0 1 1684 1039 119 11 0 chr1 144087626 144087802 -53107630 + (GGA)n Simple_repeat Simple_repeat 1 178 0 1 1684 408 295 83 8 chr1 144087802 144087925 -53107507 + MTD LTR MaLR 57 190 -229 1 1684 312 94 0 0 chr1 144087925 144087978 -53107454 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1684 819 86 21 7 chr1 144088293 144088433 -53106999 - L1_Mus3 LINE L1 -6 6632 6491 1 1684 455 298 0 26 chr1 144088438 144088555 -53106877 + MTD LTR MaLR 208 321 -98 1 1684 405 0 0 0 chr1 144088573 144088618 -53106814 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1684 216 67 0 0 chr1 144089361 144089391 -53106041 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 1 1684 5903 116 1 10 chr1 144089408 144090313 -53105119 - Lx LINE L1 -7 6647 5751 1 1684 649 215 0 15 chr1 144090334 144090466 -53104966 - B2_Mm2 SINE B2 -65 130 1 1 1684 192 77 0 0 chr1 144091049 144091075 -53104357 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1684 1078 83 0 20 chr1 144091613 144091761 -53103671 - B1_Mm SINE Alu 0 147 3 1 1684 897 287 119 27 chr1 144096523 144096967 -53098465 + RMER5 LTR ERV1 24 508 -26 1 1684 2135 252 103 5 chr1 144097334 144097976 -53097456 - Lx9 LINE L1 -48 7596 6892 1 1684 21 0 0 0 chr1 144098292 144098313 -53097119 + AT_rich Low_complexity Low_complexity 1 21 0 1 1684 23 33 0 0 chr1 144098969 144098999 -53096433 + AT_rich Low_complexity Low_complexity 1 30 0 1 1684 1257 348 81 51 chr1 144099751 144100729 -53094703 + Lx7 LINE L1 6106 7112 -584 1 1684 4127 186 10 29 chr1 144100764 144101563 -53093869 - Lx2B LINE L1 -25 6975 6192 1 1684 399 200 0 34 chr1 144101668 144101756 -53093676 - MT2A LTR ERVL -448 85 1 1 1684 23 33 0 0 chr1 144102342 144102372 -53093060 + AT_rich Low_complexity Low_complexity 1 30 0 1 1684 635 67 11 0 chr1 144102598 144102687 -53092745 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1684 237 135 0 0 chr1 144104515 144104567 -53090865 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 1 1684 24 32 0 0 chr1 144104773 144104804 -53090628 + AT_rich Low_complexity Low_complexity 1 31 0 1 1684 25 0 0 0 chr1 144104848 144104873 -53090559 + AT_rich Low_complexity Low_complexity 1 25 0 1 1684 22 56 0 0 chr1 144105069 144105105 -53090327 + AT_rich Low_complexity Low_complexity 1 36 0 1 1684 25 31 0 0 chr1 144105255 144105287 -53090145 + AT_rich Low_complexity Low_complexity 1 32 0 1 1684 3584 54 9 4 chr1 144106112 144106574 -53088858 - L1Md_F2 LINE L1 0 6582 6119 1 1684 267 114 0 0 chr1 144106774 144106818 -53088614 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1684 291 286 20 10 chr1 144106917 144107016 -53088416 + CT-rich Low_complexity Low_complexity 1 100 0 1 1684 287 368 20 40 chr1 144107572 144107722 -53087710 - MLT1D LTR MaLR -8 497 351 1 1684 1171 45 6 13 chr1 144107745 144107904 -53087528 + (TCTCCC)n Simple_repeat Simple_repeat 5 162 0 1 1684 579 29 0 0 chr1 144108008 144108077 -53087355 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1684 714 55 0 0 chr1 144108135 144108226 -53087206 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 1684 250 319 11 11 chr1 144108240 144108332 -53087100 - MLT-int LTR MaLR -1643 92 1 1 1684 47 19 0 0 chr1 144108440 144108494 -53086938 + AT_rich Low_complexity Low_complexity 1 54 0 1 1684 512 301 24 19 chr1 144108497 144108704 -53086728 - B3 SINE B2 -8 208 1 1 1684 1778 185 0 27 chr1 144109284 144109617 -53085815 + ORR1A4 LTR MaLR 6 329 0 1 1684 225 285 59 80 chr1 144109617 144109804 -53085628 + L1M3 LINE L1 5467 5649 -522 1 1684 213 235 25 42 chr1 144110158 144110278 -53085154 + (TATAA)n Simple_repeat Simple_repeat 4 121 0 1 1684 180 77 0 0 chr1 144110894 144110920 -53084512 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1 1684 225 0 0 0 chr1 144111599 144111624 -53083808 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1684 22 22 0 62 chr1 144111875 144111923 -53083509 + AT_rich Low_complexity Low_complexity 1 45 0 1 1684 29 28 0 0 chr1 144112439 144112475 -53082957 + AT_rich Low_complexity Low_complexity 1 36 0 1 1684 5576 91 7 6 chr1 144112583 144113551 -53081881 - Lx3_Mus LINE L1 -928 6081 5123 1 1684 4208 150 32 11 chr1 144113550 144113590 -53081842 + Lx3A LINE L1 6094 6133 -848 1 1684 840 119 0 0 chr1 144113590 144113749 -53081683 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 1 1684 4208 150 32 11 chr1 144113749 144114449 -53080983 + Lx3A LINE L1 6134 6850 -131 1 1684 722 150 20 26 chr1 144114442 144114593 -53080839 + Lx2 LINE L1 6793 6942 -55 1 1684 469 164 0 76 chr1 144114596 144114629 -53080803 + Lx3A LINE L1 6858 6889 -92 1 1684 3651 44 5 0 chr1 144114629 144115063 -53080369 - RLTR10C LTR ERVK 0 436 1 1 1684 469 164 0 76 chr1 144115063 144115161 -53080271 + Lx3A LINE L1 6890 6979 -2 1 1684 423 0 0 0 chr1 144115399 144115446 -53079986 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1684 1044 88 0 0 chr1 144115446 144115582 -53079850 - B1_Mus1 SINE Alu -10 138 3 1 1684 990 317 92 23 chr1 144115714 144115850 -53079582 + Lx8 LINE L1 6105 6249 -1224 1 1684 2763 161 12 12 chr1 144115850 144116342 -53079090 + Lx2 LINE L1 6504 6995 -2 1 1684 990 317 92 23 chr1 144116342 144116767 -53078665 + Lx8 LINE L1 6250 6704 -769 1 1684 2423 203 60 16 chr1 144116888 144117440 -53077992 - Lx2B LINE L1 -7 6993 6418 1 1684 408 344 97 36 chr1 144117435 144117827 -53077605 + Lx8 LINE L1 6903 7318 -155 1 1684 408 320 50 28 chr1 144118304 144118625 -53076807 + L1MA6 LINE L1 5759 6086 -214 1 1684 3758 36 4 115 chr1 144119288 144119846 -53075586 + L1Md_F2 LINE L1 6084 6579 -3 1 1684 21 0 0 0 chr1 144120420 144120441 -53074991 + AT_rich Low_complexity Low_complexity 1 21 0 1 1684 6004 68 0 3 chr1 144120701 144121480 -53073952 + L1Md_F2 LINE L1 4809 5585 -298 1 1684 7718 37 50 0 chr1 144121481 144122430 -53073002 + L1Md_F2 LINE L1 5587 6582 0 1 1684 216 170 0 0 chr1 144122439 144122492 -53072940 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1684 263 287 40 24 chr1 144122721 144122846 -53072586 - Lx7 LINE L1 0 7696 7570 1 1684 267 31 0 0 chr1 144123027 144123059 -53072373 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1684 1385 214 15 8 chr1 144123070 144123338 -53072094 - MTC LTR MaLR 0 421 152 1 1684 1827 250 61 33 chr1 144123327 144123937 -53071495 - MTC-int LTR MaLR -451 807 170 2 1684 505 226 19 0 chr1 144123931 144124037 -53071395 + MTC-int LTR MaLR 210 317 -941 2 1684 780 194 30 6 chr1 144124083 144124249 -53071183 + MTC-int LTR MaLR 2 171 -1087 2 1684 1706 238 35 5 chr1 144124251 144124623 -53070809 - MTC LTR MaLR -37 384 2 2 1684 333 47 0 0 chr1 144124768 144124811 -53070621 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1684 474 18 0 0 chr1 144124905 144124960 -53070472 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1684 180 0 0 0 chr1 144124960 144124979 -53070453 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1684 225 196 0 21 chr1 144124997 144125044 -53070388 - MTC LTR MaLR -375 46 1 2 1684 770 234 18 23 chr1 144125044 144125215 -53070217 + ORR1C2 LTR MaLR 215 384 0 2 1684 22 35 0 0 chr1 144127265 144127294 -53068138 + AT_rich Low_complexity Low_complexity 1 29 0 2 1684 226 296 178 41 chr1 144127655 144127824 -53067608 - MER92B LTR ERV1 -146 490 299 2 1684 216 196 0 0 chr1 144127909 144127970 -53067462 + A-rich Low_complexity Low_complexity 1 61 0 2 1684 386 265 65 44 chr1 144127972 144128177 -53067255 + L1_Mur3 LINE L1 2077 2279 -3568 2 1684 227 231 15 44 chr1 144128181 144128249 -53067183 + BLACKJACK DNA AcHobo 2556 2621 -323 2 1684 2024 53 11 0 chr1 144128249 144128512 -53066920 - L1_Mus1 LINE L1 -395 6172 5907 2 1684 263 274 57 41 chr1 144128585 144128707 -53066725 + L1_Mur3 LINE L1 4621 4744 -1103 2 1684 194 0 39 0 chr1 144128782 144128808 -53066624 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1684 226 340 10 10 chr1 144128828 144128929 -53066503 + L1_Mur1 LINE L1 4943 5043 -843 2 1684 27 49 0 0 chr1 144129167 144129208 -53066224 + AT_rich Low_complexity Low_complexity 1 41 0 2 1684 1037 310 62 18 chr1 144129215 144129777 -53065655 + L1MA4 LINE L1 5331 5917 -383 2 1684 1732 117 14 3 chr1 144130179 144130462 -53064970 + Lx LINE L1 6363 6648 -6 2 1684 1096 253 30 51 chr1 144130774 144131261 -53064171 + L1M2 LINE L1 4994 5483 -817 2 1684 603 62 0 0 chr1 144131347 144131427 -53064005 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 2 1684 510 83 0 0 chr1 144131428 144131500 -53063932 + (CATA)n Simple_repeat Simple_repeat 1 72 0 2 1684 326 243 29 0 chr1 144131622 144131692 -53063740 + B4A SINE B4 218 289 -3 2 1684 21 57 0 0 chr1 144131712 144131747 -53063685 + AT_rich Low_complexity Low_complexity 1 35 0 2 1684 24 32 0 0 chr1 144131842 144131873 -53063559 + AT_rich Low_complexity Low_complexity 1 31 0 2 1684 624 27 0 0 chr1 144132427 144132501 -53062931 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1684 1547 191 29 65 chr1 144133168 144133509 -53061923 - ORR1A4 LTR MaLR 0 329 1 2 1684 535 291 116 5 chr1 144134759 144134949 -53060483 + B3 SINE B2 1 211 -5 2 1684 528 16 0 0 chr1 144135059 144135120 -53060312 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1684 26 0 0 0 chr1 144136890 144136916 -53058516 + AT_rich Low_complexity Low_complexity 1 26 0 2 1684 334 71 0 0 chr1 144137133 144137175 -53058257 - Lx4B LINE L1 -520 6538 6497 2 1684 566 236 73 13 chr1 144137141 144137348 -53058084 + Lx4B LINE L1 6766 7050 -8 2 1684 1179 323 67 25 chr1 144137827 144138351 -53057081 - RMER15 LTR ERVL 0 575 30 2 1684 3872 143 40 12 chr1 144138414 144139057 -53056375 - Lx2 LINE L1 0 6997 6337 2 1684 2345 146 42 0 chr1 144139057 144139461 -53055971 + Lx2 LINE L1 5953 6373 -624 2 1684 2659 58 9 3 chr1 144139939 144140286 -53055146 + L1Md_F2 LINE L1 6222 6570 -12 2 1684 234 276 66 0 chr1 144140392 144140468 -53054964 + L1M2 LINE L1 4961 5041 -1102 2 1684 393 329 65 18 chr1 144140890 144141119 -53054313 - Lx8 LINE L1 0 7473 7234 2 1684 657 294 10 19 chr1 144141191 144141399 -53054033 - Lx8 LINE L1 -943 6530 6325 2 1684 573 253 21 89 chr1 144141436 144141548 -53053884 - Lx6 LINE L1 -26 7434 7327 2 1684 1493 67 0 5 chr1 144141548 144141742 -53053690 + B2_Mm2 SINE B2 1 193 -2 2 1684 573 253 21 89 chr1 144141742 144141820 -53053612 - Lx6 LINE L1 -134 7326 7258 2 1684 435 274 26 13 chr1 144141818 144141973 -53053459 + Lx5 LINE L1 5852 6008 -1042 2 1684 254 333 131 0 chr1 144142270 144142438 -53052994 + MLT1D LTR MaLR 270 459 -46 2 1684 647 315 61 34 chr1 144142539 144142802 -53052630 - MTE2a LTR MaLR -12 367 98 2 1684 717 301 24 48 chr1 144144420 144144668 -53050764 - MTE2b LTR MaLR -23 356 115 2 1684 235 340 47 9 chr1 144144727 144144834 -53050598 + PB1D9 SINE Alu 1 111 -9 2 1684 243 204 0 0 chr1 144144844 144144898 -53050534 + GA-rich Low_complexity Low_complexity 3 56 0 2 1684 288 277 204 15 chr1 144144944 144145076 -53050356 - MTE2b LTR MaLR -39 340 184 2 1684 612 0 0 0 chr1 144145076 144145144 -53050288 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 2 1684 2780 61 0 0 chr1 144145145 144145491 -53049941 - ORR1A1 LTR MaLR 0 346 1 2 1684 9006 77 16 6 chr1 144145492 144146918 -53048514 - ORR1A1-int LTR MaLR -1 1791 68 2 1684 1802 58 8 0 chr1 144146906 144147148 -53048284 - ORR1A1 LTR MaLR -102 244 1 2 1684 384 167 0 0 chr1 144147152 144147224 -53048208 + CT-rich Low_complexity Low_complexity 2 73 0 2 1684 31223 82 5 0 chr1 144147351 144152464 -53042968 + L1Md_F2 LINE L1 451 5585 -298 2 1684 7791 51 15 2 chr1 144152466 144153448 -53041984 + L1Md_F2 LINE L1 5588 6582 0 2 1684 279 0 0 0 chr1 144153524 144153555 -53041877 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1684 397 312 37 0 chr1 144153592 144153701 -53041731 - MTE2a LTR MaLR -266 113 1 2 1684 311 276 172 17 chr1 144153725 144153879 -53041553 - MTE-int LTR MaLR -4 1366 1207 2 1684 414 0 0 0 chr1 144153879 144153925 -53041507 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1684 374 143 0 45 chr1 144153931 144153997 -53041435 - L1_Mur2 LINE L1 -706 5171 5109 2 1684 4637 173 34 10 chr1 144153992 144154922 -53040510 + L1_Mur2 LINE L1 4154 5106 -771 2 1684 910 338 57 19 chr1 144154922 144155293 -53040139 - MTE-int LTR MaLR -373 1207 823 2 1684 387 272 0 0 chr1 144155292 144155384 -53040048 - RLTR18 LTR ERVK -524 92 1 2 1684 610 374 31 4 chr1 144155762 144156017 -53039415 - MER70-int LTR ERVL -1573 3450 3189 2 1684 258 316 0 0 chr1 144156395 144156471 -53038961 - Lx8 LINE L1 -236 7237 7162 2 1684 605 269 51 0 chr1 144156566 144156763 -53038669 + L1_Mur3 LINE L1 4210 4416 -1464 2 1684 1772 150 12 52 chr1 144157555 144157836 -53037596 + ORR1A2 LTR MaLR 5 282 -45 2 1684 1289 113 5 0 chr1 144157836 144158021 -53037411 + B2_Mm2 SINE B2 3 188 -7 2 1684 1772 150 12 52 chr1 144158021 144158069 -53037363 + ORR1A2 LTR MaLR 283 321 -6 2 1684 3655 173 10 7 chr1 144158089 144158707 -53036725 - RLTR17 LTR ERVK -71 621 2 2 1684 261 0 0 0 chr1 144158952 144158981 -53036451 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1684 309 109 0 0 chr1 144159062 144159108 -53036324 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1684 397 236 8 8 chr1 144160998 144161126 -53034306 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1684 848 304 107 29 chr1 144162644 144162990 -53032442 - MTEb LTR MaLR -2 377 5 2 1684 2463 213 36 21 chr1 144163124 144163732 -53031700 + RLTR20D LTR ERVK 10 568 0 2 1684 649 275 39 66 chr1 144163939 144164274 -53031158 + RLTR15 LTR ERVK 1 326 -33 2 1684 414 0 0 0 chr1 144164384 144164430 -53031002 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1684 411 21 0 0 chr1 144164430 144164477 -53030955 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1684 253 0 54 0 chr1 144164831 144164868 -53030564 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1684 419 76 0 43 chr1 144165039 144165108 -53030324 + (TTTTC)n Simple_repeat Simple_repeat 1 66 0 2 1684 1574 171 49 5 chr1 144165108 144165430 -53030002 - L1_Mur1 LINE L1 -767 5524 5157 2 1684 5378 88 7 0 chr1 144165430 144166170 -53029262 - L1_Mus1 LINE L1 0 6567 5823 2 1684 1574 224 47 8 chr1 144166170 144166239 -53029193 - L1_Mur1 LINE L1 -730 5156 5089 2 1684 1042 224 120 15 chr1 144166568 144166835 -53028597 + Lx2B LINE L1 6706 7000 0 2 1684 2299 79 41 0 chr1 144167607 144167892 -53027540 + MT2C_Mm LTR ERVL 1 285 -190 2 1684 396 0 0 0 chr1 144167892 144167936 -53027496 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1684 2299 79 41 0 chr1 144167936 144167967 -53027465 + MT2C_Mm LTR ERVL 286 328 -147 2 1684 1616 53 0 0 chr1 144167960 144168167 -53027265 + MTB LTR MaLR 194 400 0 2 1684 1514 188 78 0 chr1 144168406 144168714 -53026718 + Lx2A1 LINE L1 6670 7001 -7 2 1684 26 64 0 0 chr1 144168717 144168764 -53026668 + AT_rich Low_complexity Low_complexity 1 47 0 2 1684 22 0 0 54 chr1 144169172 144169193 -53026239 + AT_rich Low_complexity Low_complexity 1 21 0 2 1684 576 98 0 47 chr1 144169193 144169300 -53026132 - L1Md_F2 LINE L1 0 6582 6481 2 1684 6248 57 4 2 chr1 144169297 144170085 -53025347 + L1Md_F2 LINE L1 5794 6582 0 2 1684 22 0 0 54 chr1 144170085 144170099 -53025333 + AT_rich Low_complexity Low_complexity 1 13 0 2 1684 306 253 38 0 chr1 144170284 144170363 -53025069 + L2 LINE L2 2581 2662 -757 2 1684 237 65 0 0 chr1 144170549 144170580 -53024852 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1684 198 0 0 0 chr1 144172481 144172503 -53022929 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1684 330 26 0 0 chr1 144172904 144172943 -53022489 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1684 685 312 39 10 chr1 144173030 144173237 -53022195 - MTD LTR MaLR -8 411 199 2 1684 411 294 83 48 chr1 144173724 144173892 -53021540 - Lx8 LINE L1 -211 7262 7089 2 1684 22 35 0 0 chr1 144174448 144174477 -53020955 + AT_rich Low_complexity Low_complexity 1 29 0 2 1684 183 42 0 0 chr1 144174477 144174501 -53020931 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 2 1684 2783 80 65 0 chr1 144174557 144174944 -53020488 - L1_Mus1 LINE L1 0 6567 6156 2 1684 3607 165 70 14 chr1 144174942 144175630 -53019802 - Lx3C LINE L1 0 6976 6251 2 1684 25 0 0 0 chr1 144176900 144176925 -53018507 + AT_rich Low_complexity Low_complexity 1 25 0 2 1684 23 68 0 0 chr1 144176943 144176987 -53018445 + AT_rich Low_complexity Low_complexity 1 44 0 2 1684 21 36 0 0 chr1 144177175 144177203 -53018229 + AT_rich Low_complexity Low_complexity 1 28 0 2 1684 272 264 29 136 chr1 144177868 144178008 -53017424 - MER5A DNA MER1_type -29 160 36 2 1684 279 0 0 0 chr1 144178910 144178941 -53016491 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1684 324 0 0 0 chr1 144179139 144179175 -53016257 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 210 342 61 0 0 chr1 144179175 144179223 -53016209 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1685 429 20 0 0 chr1 144180280 144180330 -53015102 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1685 596 189 18 0 chr1 144180667 144180778 -53014654 + B1_Mur3 SINE Alu 1 113 -36 3 1685 1535 290 150 12 chr1 144180843 144181694 -53013738 + Lx6 LINE L1 6475 7449 -11 3 1685 183 42 0 0 chr1 144181767 144181791 -53013641 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1685 530 252 20 48 chr1 144182440 144182586 -53012846 - B1_Mur3 SINE Alu 0 149 8 3 1685 23 54 0 0 chr1 144183221 144183258 -53012174 + AT_rich Low_complexity Low_complexity 1 37 0 3 1685 338 280 5 112 chr1 144183502 144183561 -53011871 + L1MA9 LINE L1 5844 5894 -418 3 1685 207 0 0 0 chr1 144183561 144183584 -53011848 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1685 338 280 5 112 chr1 144183584 144183721 -53011711 + L1MA9 LINE L1 5895 6018 -294 3 1685 205 51 0 49 chr1 144184037 144184078 -53011354 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1685 422 295 53 15 chr1 144184306 144184437 -53010995 + B1F SINE Alu 14 149 0 3 1685 296 81 0 0 chr1 144184562 144184599 -53010833 - L1_Mus1 LINE L1 -384 6183 6147 3 1685 1191 53 0 0 chr1 144184599 144184750 -53010682 + L1_Mus1 LINE L1 6416 6566 -1 3 1685 25 31 0 0 chr1 144185138 144185170 -53010262 + AT_rich Low_complexity Low_complexity 1 32 0 3 1685 13733 119 16 2 chr1 144185454 144187006 -53008426 + L1_Mus1 LINE L1 3742 5322 -561 3 1685 4885 45 0 0 chr1 144187006 144187600 -53007832 - L1Md_T LINE L1 0 6582 5989 3 1685 13733 88 6 1 chr1 144187600 144188842 -53006590 + L1_Mus1 LINE L1 5323 6567 0 3 1685 193 314 35 5 chr1 144189056 144189185 -53006247 + MIRm SINE MIR 126 262 -14 3 1685 239 274 28 145 chr1 144190197 144190342 -53005090 - B2_Mm2 SINE B2 -20 175 48 3 1685 200 135 27 0 chr1 144190366 144190403 -53005029 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1685 359 178 0 0 chr1 144190406 144190479 -53004953 - Lx3A LINE L1 -11 6970 6898 3 1685 2279 157 29 0 chr1 144190673 144191049 -53004383 - Lx2B LINE L1 -284 6716 6330 3 1685 21 0 0 0 chr1 144191353 144191374 -53004058 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 21 36 0 0 chr1 144191518 144191546 -53003886 + AT_rich Low_complexity Low_complexity 1 28 0 3 1685 490 320 0 0 chr1 144192202 144192324 -53003108 - B1F SINE Alu -11 138 17 3 1685 3339 192 5 2 chr1 144192343 144192985 -53002447 - Lx8 LINE L1 -1678 5795 5159 3 1685 7044 132 43 15 chr1 144192985 144194153 -53001279 + Lx2 LINE L1 5785 6984 -13 3 1685 558 29 0 0 chr1 144194173 144194241 -53001191 + (GAAAA)n Simple_repeat Simple_repeat 4 71 0 3 1685 1162 62 0 0 chr1 144194242 144194387 -53001045 + B1_Mus1 SINE Alu 2 146 -2 3 1685 300 169 12 49 chr1 144194387 144194549 -53000883 + (CAAA)n Simple_repeat Simple_repeat 1 156 0 3 1685 229 108 0 0 chr1 144195086 144195123 -53000309 - B2_Mm1t SINE B2 -155 38 2 3 1685 369 0 0 0 chr1 144195181 144195222 -53000210 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1685 35 0 0 0 chr1 144196342 144196377 -52999055 + AT_rich Low_complexity Low_complexity 1 35 0 3 1685 25 51 0 0 chr1 144196404 144196443 -52998989 + AT_rich Low_complexity Low_complexity 1 39 0 3 1685 212 246 35 0 chr1 144196519 144196576 -52998856 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 3 1685 3406 18 8 0 chr1 144196672 144197061 -52998371 + MTA_Mm LTR MaLR 1 392 -4 3 1685 329 333 39 39 chr1 144197106 144197284 -52998148 - Lx9 LINE L1 -312 7332 7155 3 1685 539 294 79 38 chr1 144197295 144197610 -52997822 + RLTR15 LTR ERVK 1 328 -31 3 1685 680 265 59 0 chr1 144197649 144197819 -52997613 + ORR1D1 LTR MaLR 1 180 -194 3 1685 27 49 0 0 chr1 144197862 144197903 -52997529 + AT_rich Low_complexity Low_complexity 1 41 0 3 1685 5117 98 4 7 chr1 144197903 144198616 -52996816 - Lx3_Mus LINE L1 -10 6999 6289 3 1685 597 247 97 16 chr1 144198654 144198839 -52996593 + ORR1D1 LTR MaLR 185 384 0 3 1685 1449 319 32 68 chr1 144198882 144199660 -52995772 - Lx9 LINE L1 -594 7050 6301 3 1685 330 26 0 0 chr1 144200048 144200087 -52995345 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1685 324 0 0 0 chr1 144200087 144200122 -52995310 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1685 22 0 0 0 chr1 144200320 144200342 -52995090 + AT_rich Low_complexity Low_complexity 1 22 0 3 1685 1053 87 0 0 chr1 144201171 144201309 -52994123 + B1_Mus1 SINE Alu 2 139 -9 3 1685 521 52 13 0 chr1 144201642 144201719 -52993713 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1685 578 250 148 34 chr1 144203099 144203317 -52992115 + Lx9 LINE L1 7264 7500 -144 3 1685 441 50 0 0 chr1 144203317 144203377 -52992055 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1685 578 250 148 34 chr1 144203377 144203456 -52991976 + Lx9 LINE L1 7501 7594 -50 3 1685 29 47 0 0 chr1 144203462 144203505 -52991927 + AT_rich Low_complexity Low_complexity 1 43 0 3 1685 32 43 0 0 chr1 144203533 144203579 -52991853 + AT_rich Low_complexity Low_complexity 1 46 0 3 1685 21 0 0 0 chr1 144204734 144204755 -52990677 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 21 36 0 0 chr1 144205695 144205723 -52989709 + AT_rich Low_complexity Low_complexity 1 28 0 3 1685 775 253 39 37 chr1 144206249 144206515 -52988917 + BGLII_B LTR ERVK 5 246 -195 3 1685 387 0 0 0 chr1 144206638 144206681 -52988751 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1685 3365 68 28 0 chr1 144206874 144207298 -52988134 + RLTR10C LTR ERVK 1 436 0 3 1685 2476 109 32 37 chr1 144207298 144207699 -52987733 + MMERVK10C-int LTR ERVK 1 399 -7182 3 1685 40582 53 0 3 chr1 144207697 144212652 -52982780 + MMERVK10C-int LTR ERVK 870 5810 -1771 3 1685 4866 87 8 3 chr1 144212638 144213634 -52981798 + MMERVK10C-int LTR ERVK 6646 7675 -5 3 1685 3440 54 28 0 chr1 144213637 144214061 -52981371 + RLTR10C LTR ERVK 1 436 0 3 1685 5348 106 0 62 chr1 144214367 144215224 -52980208 + L1_Mus4 LINE L1 5827 6630 -6 3 1685 281 189 38 0 chr1 144217228 144217281 -52978151 - PB1D10 SINE Alu -49 68 14 3 1685 356 0 23 0 chr1 144217350 144217394 -52978038 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1685 540 197 21 8 chr1 144217767 144217894 -52977538 + RMER6C LTR ERVK 1 167 -553 3 1685 6911 126 9 4 chr1 144217894 144219067 -52976365 - Lx LINE L1 -22 6632 5455 3 1685 1934 224 58 20 chr1 144219068 144219570 -52975862 + RMER6C LTR ERVK 170 690 0 3 1685 251 317 99 6 chr1 144220663 144220825 -52974607 + L1MEc LINE L1 597 773 -5627 3 1685 238 67 22 22 chr1 144220966 144221012 -52974420 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1685 1503 199 54 9 chr1 144221016 144221351 -52974081 + Lx2B LINE L1 6121 6470 -530 3 1685 198 0 0 0 chr1 144221361 144221383 -52974049 + (TGGG)n Simple_repeat Simple_repeat 1 22 0 3 1685 309 236 12 14 chr1 144221399 144221526 -52973906 + Lx2B LINE L1 6905 6997 -3 3 1685 1528 104 13 22 chr1 144221530 144221757 -52973675 + RLTR27 LTR ERVK 85 309 0 3 1685 249 339 48 16 chr1 144221757 144221881 -52973551 - MLT1B LTR MaLR -260 130 3 3 1685 23 0 0 0 chr1 144221886 144221909 -52973523 + AT_rich Low_complexity Low_complexity 1 23 0 3 1685 423 321 117 39 chr1 144222345 144222653 -52972779 + L1ME2 LINE L1 5651 5982 -182 3 1685 903 298 100 45 chr1 144222671 144223050 -52972382 + MTD LTR MaLR 20 419 0 3 1685 222 62 0 0 chr1 144224800 144224832 -52970600 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1685 2110 131 48 3 chr1 144225045 144225420 -52970012 + MusHAL1 LINE L1 1318 1709 -1003 3 1685 1041 153 0 0 chr1 144225418 144225588 -52969844 + Lx LINE L1 6370 6539 -115 3 1685 2139 114 0 3 chr1 144225606 144225922 -52969510 + Lx2 LINE L1 5598 5912 -1085 3 1685 287 49 24 0 chr1 144226157 144226198 -52969234 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1685 21 0 0 0 chr1 144227384 144227405 -52968027 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 825 276 30 23 chr1 144227812 144228075 -52967357 - Lx9 LINE L1 -369 7275 7011 3 1685 542 295 60 57 chr1 144228121 144228177 -52967255 - Lx7 LINE L1 -1450 6246 6190 3 1685 510 17 0 0 chr1 144228177 144228236 -52967196 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1685 542 295 60 57 chr1 144228236 144228549 -52966883 - Lx7 LINE L1 -1507 6189 5876 3 1685 386 207 34 17 chr1 144228675 144228793 -52966639 - Lx6 LINE L1 -1560 5900 5781 3 1685 642 216 171 0 chr1 144228783 144228899 -52966533 - RMER1C Other Other 0 1342 1197 3 1685 738 78 0 0 chr1 144228899 144229001 -52966431 + (GGA)n Simple_repeat Simple_repeat 2 103 0 3 1685 642 216 171 0 chr1 144229001 144229065 -52966367 - RMER1C Other Other -146 1196 1132 3 1685 891 321 31 6 chr1 144229057 144229377 -52966055 + RMER1C Other Other 650 977 -365 3 1685 514 224 77 37 chr1 144229411 144229625 -52965807 - Lx6 LINE L1 -85 5795 5553 3 1685 527 0 0 16 chr1 144229923 144229987 -52965445 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1685 224 327 68 98 chr1 144230797 144230960 -52964472 - B2_Mm2 SINE B2 -37 158 1 3 1685 602 360 45 21 chr1 144231692 144232027 -52963405 + MLT1E LTR MaLR 308 650 -3 3 1685 454 207 66 0 chr1 144232028 144232149 -52963283 + Lx9 LINE L1 7498 7626 -18 3 1685 798 109 0 0 chr1 144232317 144232436 -52962996 + (TCTCC)n Simple_repeat Simple_repeat 3 121 0 3 1685 648 120 0 0 chr1 144232447 144232547 -52962885 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 3 1685 239 301 137 0 chr1 144232759 144232832 -52962600 + ID4_ SINE ID 1 83 0 3 1685 402 268 91 17 chr1 144233099 144233274 -52962158 + L1MA10 LINE L1 6125 6312 -22 3 1685 7223 43 18 6 chr1 144233411 144234314 -52961118 - L1Md_F2 LINE L1 0 6582 5669 3 1685 328 200 24 16 chr1 144235950 144236077 -52959355 + (TA)n Simple_repeat Simple_repeat 1 128 0 3 1685 3665 153 2 38 chr1 144236649 144237280 -52958152 - Lx3B LINE L1 -5 6968 6361 3 1685 738 317 125 0 chr1 144237616 144237903 -52957529 - RMER1C Other Other -580 762 440 3 1685 36 53 0 0 chr1 144238047 144238104 -52957328 + AT_rich Low_complexity Low_complexity 1 57 0 3 1685 24 67 0 0 chr1 144238554 144238599 -52956833 + AT_rich Low_complexity Low_complexity 1 45 0 3 1685 238 136 50 17 chr1 144239236 144239296 -52956136 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 3 1685 575 299 32 32 chr1 144239303 144239552 -52955880 - Lx9 LINE L1 -172 7472 7224 3 1685 258 143 15 31 chr1 144240110 144240175 -52955257 + CT-rich Low_complexity Low_complexity 3 66 0 3 1685 418 317 134 15 chr1 144240441 144240643 -52954789 + MTEa LTR MaLR 2 227 -152 3 1685 631 260 152 5 chr1 144240641 144240865 -52954567 + Charlie1 DNA MER1_type 1055 1311 -1470 3 1685 1797 200 50 21 chr1 144241239 144241622 -52953810 + ORR1B1 LTR MaLR 1 394 0 3 1685 343 361 101 23 chr1 144241856 144242202 -52953230 - Lx8 LINE L1 -29 7444 7072 4 1685 971 292 14 31 chr1 144242240 144242533 -52952899 + RLTR18B LTR ERVK 2 289 -223 4 1685 1543 229 46 3 chr1 144242628 144242979 -52952453 - ORR1C1 LTR MaLR 0 378 13 4 1685 269 200 0 16 chr1 144243116 144243177 -52952255 + RLTR18B LTR ERVK 339 398 -114 4 1685 563 327 58 16 chr1 144243383 144243641 -52951791 - Lx8 LINE L1 -455 7018 6750 4 1685 372 139 0 0 chr1 144243682 144243761 -52951671 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1685 2722 125 77 21 chr1 144243773 144244256 -52951176 + Lx LINE L1 6142 6651 -3 4 1685 288 0 0 0 chr1 144245047 144245079 -52950353 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 1685 22 0 0 0 chr1 144245222 144245244 -52950188 + AT_rich Low_complexity Low_complexity 1 22 0 4 1685 1324 292 30 12 chr1 144245487 144245558 -52949874 - L1MA4 LINE L1 -471 5829 5751 4 1685 330 136 15 0 chr1 144245558 144245624 -52949808 - L1_Mus2 LINE L1 -1 6565 6499 4 1685 24904 133 60 20 chr1 144245624 144250242 -52945190 - L1MA4 LINE L1 -550 5750 940 4 1685 11524 81 4 5 chr1 144250243 144252540 -52942892 - L1Md_F2 LINE L1 0 6582 4287 4 1685 2834 3 0 0 chr1 144252540 144252864 -52942568 + L1_Mm LINE L1 3667 3990 -1893 4 1685 2976 8 42 3 chr1 144252864 144253217 -52942215 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1685 17394 21 2 3 chr1 144253217 144255208 -52940224 - IAPEz-int LTR ERVK 0 6481 4494 4 1685 9545 11 0 0 chr1 144255211 144256272 -52939160 - IAPEz-int LTR ERVK -2211 4270 3210 4 1685 7054 77 122 38 chr1 144256271 144257472 -52937960 - IAPEz-int LTR ERVK -5168 1313 67 4 1685 1014 86 159 0 chr1 144257443 144257606 -52937826 - IAPEz-int LTR ERVK -6285 196 8 4 1685 2976 8 42 3 chr1 144257606 144257959 -52937473 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1685 14284 4 0 0 chr1 144257959 144259561 -52935871 + L1Md_A LINE L1 3985 5586 -297 4 1685 9015 2 0 0 chr1 144259561 144260556 -52934876 + L1Md_A LINE L1 5587 6581 -1 4 1685 2548 74 3 6 chr1 144260556 144260910 -52934522 - L1Md_F2 LINE L1 -1607 4276 3924 4 1685 745 136 8 0 chr1 144260913 144261031 -52934401 - L1Md_F LINE L1 -6116 403 285 4 1685 1472 190 82 41 chr1 144261039 144261085 -52934347 - L1MA4 LINE L1 -5656 960 921 4 1685 3566 144 35 50 chr1 144261085 144261847 -52933585 - RMER17A LTR ERVK 0 751 1 4 1685 1472 190 82 41 chr1 144261847 144262189 -52933243 - L1MA4 LINE L1 -5696 920 556 4 1685 415 211 188 36 chr1 144262209 144262401 -52933031 - L1VL1 LINE L1 -5926 496 276 4 1685 26 30 0 0 chr1 144262994 144263027 -52932405 + AT_rich Low_complexity Low_complexity 1 33 0 4 1685 21 0 0 0 chr1 144263071 144263092 -52932340 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 219 196 65 0 chr1 144264143 144264189 -52931243 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 4 1685 1434 311 28 19 chr1 144264256 144264689 -52930743 - RMER1A Other Other -591 439 3 4 1685 639 261 172 60 chr1 144264708 144265081 -52930351 + MTD LTR MaLR 5 419 0 4 1685 687 183 18 1 chr1 144265683 144265831 -52929601 + Lx3C LINE L1 5284 5439 -734 4 1685 4453 43 4 0 chr1 144265857 144266397 -52929035 - L1Md_F2 LINE L1 -15 6567 6026 4 1685 6400 113 59 6 chr1 144266408 144267411 -52928021 - Lx LINE L1 -3 6651 5596 4 1685 6636 159 17 3 chr1 144267407 144268077 -52927355 + Lx3C LINE L1 5414 6095 -881 4 1685 432 0 0 0 chr1 144268077 144268125 -52927307 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1685 6636 193 47 6 chr1 144268125 144268962 -52926470 + Lx3C LINE L1 6096 6971 -5 4 1685 645 183 15 6 chr1 144269140 144269285 -52926147 - Lx3C LINE L1 -253 6747 6611 4 1685 209 271 0 0 chr1 144270110 144270180 -52925252 + (TTTA)n Simple_repeat Simple_repeat 1 70 0 4 1685 21 0 0 0 chr1 144270955 144270976 -52924456 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 635 46 11 0 chr1 144271811 144271898 -52923534 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 4 1685 240 35 0 0 chr1 144272008 144272037 -52923395 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1685 1618 250 72 11 chr1 144272038 144272483 -52922949 - RLTR20B3 LTR ERVK -105 472 1 4 1685 4795 146 66 2 chr1 144272602 144273421 -52922011 + L1Md_F LINE L1 269 1139 -5380 4 1685 8228 74 4 4 chr1 144276665 144277765 -52917667 + L1Md_F2 LINE L1 4487 5586 -297 4 1685 7414 73 1 17 chr1 144277765 144278769 -52916663 + L1Md_F2 LINE L1 5587 6574 -8 4 1685 455 272 12 12 chr1 144278829 144278993 -52916439 - Lx9 LINE L1 -230 7414 7251 4 1685 534 286 146 73 chr1 144279056 144279343 -52916089 + MLT1F LTR MaLR 218 525 -23 4 1685 206 340 138 33 chr1 144279559 144279769 -52915663 - MIRc SINE MIR -15 253 22 4 1685 21 36 0 0 chr1 144280546 144280574 -52914858 + AT_rich Low_complexity Low_complexity 1 28 0 4 1685 21 0 0 0 chr1 144280624 144280645 -52914787 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 21 0 0 0 chr1 144282098 144282119 -52913313 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 24 32 0 0 chr1 144282216 144282247 -52913185 + AT_rich Low_complexity Low_complexity 1 31 0 4 1685 2394 133 5 7 chr1 144282340 144282749 -52912683 + Lx LINE L1 6247 6654 0 4 1685 661 168 25 13 chr1 144282749 144282906 -52912526 + MTC-int LTR MaLR 1061 1219 -39 4 1685 23 0 0 0 chr1 144283155 144283178 -52912254 + AT_rich Low_complexity Low_complexity 1 23 0 4 1685 234 0 0 0 chr1 144283817 144283843 -52911589 + (TATATG)n Simple_repeat Simple_repeat 1 26 0 4 1685 21 0 0 0 chr1 144284390 144284411 -52911021 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 340 97 0 0 chr1 144284849 144284911 -52910521 - Lx LINE L1 -1 6653 6592 4 1685 1020 74 0 92 chr1 144285059 144285222 -52910210 + B1_Mus1 SINE Alu 1 148 0 4 1685 198 91 0 0 chr1 144285225 144285258 -52910174 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1685 399 21 0 0 chr1 144285434 144285482 -52909950 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 4 1685 266 240 20 0 chr1 144285489 144285589 -52909843 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 1685 248 333 67 25 chr1 144285590 144285710 -52909722 - B2_Mm2 SINE B2 -65 130 6 4 1685 23 0 0 0 chr1 144287267 144287290 -52908142 + AT_rich Low_complexity Low_complexity 1 23 0 4 1685 238 225 0 191 chr1 144288076 144288186 -52907246 + MT2B LTR ERVL 152 240 -361 4 1685 444 185 0 47 chr1 144288104 144288189 -52907243 + B1_Mur4 SINE Alu 9 89 -61 4 1685 465 34 0 0 chr1 144288189 144288248 -52907184 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1685 216 0 0 0 chr1 144288248 144288271 -52907161 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1685 954 50 0 0 chr1 144288275 144288395 -52907037 + (GAAA)n Simple_repeat Simple_repeat 3 122 0 4 1685 477 97 0 0 chr1 144288594 144288666 -52906766 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1685 376 333 92 28 chr1 144289049 144289191 -52906241 + RSINE1 SINE B4 13 163 -2 4 1685 465 19 0 0 chr1 144289196 144289250 -52906182 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1685 234 0 0 0 chr1 144289250 144289275 -52906157 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1685 27 0 0 0 chr1 144290700 144290727 -52904705 + AT_rich Low_complexity Low_complexity 1 27 0 4 1685 652 243 58 5 chr1 144290727 144290934 -52904498 + L1MA8 LINE L1 5772 5989 -302 4 1685 323 333 17 0 chr1 144290955 144291075 -52904357 - MTEb LTR MaLR -5 374 253 4 1685 225 146 0 0 chr1 144291104 144291145 -52904287 - L1M3 LINE L1 -740 5431 5391 4 1685 31 82 0 0 chr1 144291189 144291262 -52904170 + AT_rich Low_complexity Low_complexity 1 73 0 4 1685 1422 169 0 0 chr1 144291309 144291557 -52903875 - L1_Mur1 LINE L1 -798 5088 4841 4 1685 3241 28 15 0 chr1 144293631 144294021 -52901411 - MTA_Mm LTR MaLR 0 396 1 4 1685 484 306 65 25 chr1 144294620 144294821 -52900611 - B3 SINE B2 -7 209 1 4 1685 477 0 0 0 chr1 144295015 144295068 -52900364 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1685 188 67 0 32 chr1 144295364 144295395 -52900037 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 4 1685 582 270 58 52 chr1 144295745 144296054 -52899378 - Lx7 LINE L1 -4 7692 7382 4 1685 588 143 0 0 chr1 144296054 144296152 -52899280 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 4 1685 324 111 0 0 chr1 144296182 144296236 -52899196 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1685 5102 263 19 14 chr1 144296240 144296848 -52898584 - Lx7 LINE L1 -326 7370 6763 4 1685 2657 48 36 0 chr1 144296848 144297182 -52898250 + ORR1A1 LTR MaLR 1 346 0 4 1685 5102 263 19 14 chr1 144297182 144297872 -52897560 - Lx7 LINE L1 -934 6762 6066 4 1685 2927 211 41 149 chr1 144297939 144298073 -52897359 + Lx7 LINE L1 3919 4036 -1844 4 1685 1868 197 47 13 chr1 144298073 144298454 -52896978 - ORR1B1 LTR MaLR 0 394 1 4 1685 2927 211 41 149 chr1 144298454 144298789 -52896643 + Lx7 LINE L1 4037 4387 -1493 4 1685 633 196 42 0 chr1 144298789 144298932 -52896500 + Lx3B LINE L1 6820 6968 -5 4 1685 2927 211 41 149 chr1 144298932 144299117 -52896315 + Lx7 LINE L1 4388 4528 -1352 4 1685 804 146 139 6 chr1 144299117 144299282 -52896150 + B2_Mm2 SINE B2 1 187 -8 4 1685 2927 211 41 149 chr1 144299282 144299883 -52895549 + Lx7 LINE L1 4529 5041 -839 4 1685 901 259 172 9 chr1 144299879 144300188 -52895244 + Lx7 LINE L1 5403 5754 -1942 4 1685 620 291 15 18 chr1 144300194 144300467 -52894965 + L1VL2 LINE L1 131 402 -5933 4 1685 14092 158 61 30 chr1 144300470 144303869 -52891563 + L1Md_F LINE L1 335 3836 -2047 4 1685 2704 102 3 0 chr1 144303869 144304252 -52891180 + L1_Mus2 LINE L1 6181 6564 -2 4 1685 22 35 0 0 chr1 144304252 144304281 -52891151 + AT_rich Low_complexity Low_complexity 1 29 0 4 1685 229 233 0 32 chr1 144304301 144304363 -52891069 + Lx7 LINE L1 5737 5796 -1254 4 1685 323 180 16 16 chr1 144304361 144304423 -52891009 + Lx7 LINE L1 5876 5937 -1759 4 1685 522 334 70 35 chr1 144304592 144304933 -52890499 + Lx8 LINE L1 7121 7473 0 4 1685 326 268 180 28 chr1 144305252 144305502 -52889930 - L1MDb LINE L1 -5168 1241 954 4 1685 942 58 0 0 chr1 144305682 144305803 -52889629 + (CTTTG)n Simple_repeat Simple_repeat 2 122 0 4 1685 276 281 0 0 chr1 144306366 144306423 -52889009 - ID4_ SINE ID -10 73 17 4 1685 321 347 43 45 chr1 144307240 144307503 -52887929 + MLT2B1 LTR ERVL 1 255 -260 4 1685 533 319 38 29 chr1 144308072 144308282 -52887150 + MLT1F2 LTR MaLR 347 558 -2 4 1685 216 0 0 0 chr1 144308713 144308737 -52886695 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1685 360 0 0 0 chr1 144309116 144309156 -52886276 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1685 499 309 14 0 chr1 144309379 144309518 -52885914 + B1_Mur1 SINE Alu 2 142 -7 4 1685 185 224 114 38 chr1 144310057 144310136 -52885296 + L3 LINE CR1 3292 3376 -1113 4 1686 27 0 0 0 chr1 144310967 144310994 -52884438 + AT_rich Low_complexity Low_complexity 1 27 0 4 1686 681 258 84 8 chr1 144311238 144311488 -52883944 - L1M2 LINE L1 -1371 4772 4504 4 1686 641 341 44 75 chr1 144312726 144313113 -52882319 + MTEa LTR MaLR 5 379 0 4 1686 32 0 0 0 chr1 144314066 144314098 -52881334 + AT_rich Low_complexity Low_complexity 1 32 0 4 1686 23 0 0 0 chr1 144314591 144314614 -52880818 + AT_rich Low_complexity Low_complexity 1 23 0 4 1686 408 88 0 0 chr1 144315255 144315312 -52880120 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1686 1493 16 8 4 chr1 144315314 144315563 -52879869 + (TCTCCC)n Simple_repeat Simple_repeat 1 249 0 5 1686 21 36 0 0 chr1 144316389 144316417 -52879015 + AT_rich Low_complexity Low_complexity 1 28 0 5 1686 337 344 21 32 chr1 144316713 144316899 -52878533 + L1MB7 LINE L1 5484 5667 -517 5 1686 337 296 63 48 chr1 144316941 144317147 -52878285 - B3 SINE B2 -5 211 3 5 1686 36 0 0 0 chr1 144317242 144317278 -52878154 + AT_rich Low_complexity Low_complexity 1 36 0 5 1686 310 305 108 41 chr1 144317312 144317507 -52877925 + L1MB7 LINE L1 5774 5981 -203 5 1686 584 151 0 60 chr1 144317793 144317927 -52877505 - Lx LINE L1 -6 6648 6523 5 1686 378 0 0 0 chr1 144317961 144318003 -52877429 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1686 34 42 0 0 chr1 144318592 144318640 -52876792 + AT_rich Low_complexity Low_complexity 1 48 0 5 1686 1356 75 0 3 chr1 144320265 144320464 -52874968 - L1_Mur1 LINE L1 -1066 4820 4624 5 1686 247 25 50 0 chr1 144320477 144320517 -52874915 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1686 227 122 0 75 chr1 144320523 144320576 -52874856 - L1_Mur1 LINE L1 -1244 4642 4594 5 1686 686 246 27 23 chr1 144320719 144320939 -52874493 + Lx7 LINE L1 4286 4506 -1374 5 1686 3152 238 37 6 chr1 144320986 144321885 -52873547 + Lx7 LINE L1 5005 5932 -1764 5 1686 3494 43 7 0 chr1 144322061 144322502 -52872930 - L1Md_F2 LINE L1 0 6582 6139 5 1686 29761 78 5 14 chr1 144324121 144327422 -52868010 - L1Md_F2 LINE L1 0 6582 3266 5 1686 4374 91 11 21 chr1 144327422 144328088 -52867344 - L1Md_F2 LINE L1 0 6582 5924 5 1686 29761 85 7 16 chr1 144328088 144329767 -52865665 - L1Md_F2 LINE L1 -2618 3265 1648 5 1686 1702 204 3 6 chr1 144329751 144330097 -52865335 - L1Md_F2 LINE L1 -5995 621 277 5 1686 1484 176 8 7 chr1 144330097 144330387 -52865045 - L1Md_F2 LINE L1 -5974 750 217 5 1686 878 208 47 114 chr1 144330632 144330931 -52864501 - Lx4A LINE L1 -3 7055 6777 5 1686 1010 98 11 28 chr1 144330954 144331132 -52864300 + L1_Mus3 LINE L1 6411 6585 -53 5 1686 378 0 0 0 chr1 144331137 144331179 -52864253 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1686 1290 154 42 29 chr1 144331182 144331423 -52864009 - Lx4A LINE L1 -269 6789 6546 5 1686 381 43 0 0 chr1 144332362 144332409 -52863023 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1686 1032 308 78 18 chr1 144332778 144333395 -52862037 - Lx9 LINE L1 -1023 6621 5867 5 1686 1023 206 32 36 chr1 144333476 144333723 -52861709 - Lx7 LINE L1 -327 7369 7124 5 1686 1200 239 65 3 chr1 144333730 144334070 -52861362 + L1_Mur3 LINE L1 4757 5117 -763 5 1686 2238 249 86 62 chr1 144334080 144335158 -52860274 - Lx9 LINE L1 -521 5326 4223 5 1686 534 280 37 57 chr1 144335200 144335381 -52860051 - Lx9 LINE L1 -2002 3845 3667 5 1686 282 56 0 0 chr1 144335381 144335417 -52860015 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 5 1686 534 280 37 57 chr1 144335417 144335534 -52859898 - Lx9 LINE L1 -2181 3666 3553 5 1686 344 162 123 12 chr1 144335532 144335613 -52859819 + Lx7 LINE L1 7266 7355 -341 5 1686 24 53 0 0 chr1 144335626 144335664 -52859768 + AT_rich Low_complexity Low_complexity 1 38 0 5 1686 544 243 22 54 chr1 144335704 144335926 -52859506 - Lx9 LINE L1 -2923 2924 2710 5 1686 423 126 21 21 chr1 144335952 144336049 -52859383 - L1_Mus3 LINE L1 0 6638 6542 5 1686 492 18 0 0 chr1 144336761 144336818 -52858614 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1686 361 241 28 0 chr1 144337050 144337158 -52858274 + Lx2B LINE L1 6902 6996 -4 5 1686 228 67 0 0 chr1 144337293 144337323 -52858109 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 5 1686 215 133 0 22 chr1 144337324 144337370 -52858062 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 5 1686 496 336 68 34 chr1 144337438 144337672 -52857760 - B4A SINE B4 -45 247 6 5 1686 25 51 0 0 chr1 144337675 144337714 -52857718 + AT_rich Low_complexity Low_complexity 1 39 0 5 1686 233 326 94 14 chr1 144337919 144338196 -52857236 + L1MA7 LINE L1 5813 6111 -180 5 1686 578 170 47 0 chr1 144339887 144339993 -52855439 + RMER6A LTR ERVK 1 111 -579 5 1686 343 190 37 259 chr1 144339979 144340086 -52855346 + MT2B LTR ERVL 183 259 -342 5 1686 349 262 66 28 chr1 144340086 144340192 -52855240 + B1_Mus2 SINE Alu 3 112 -35 5 1686 1758 196 55 31 chr1 144340182 144340599 -52854833 + RMER6A LTR ERVK 330 756 0 5 1686 22 56 0 0 chr1 144340766 144340802 -52854630 + AT_rich Low_complexity Low_complexity 1 36 0 5 1686 488 284 8 8 chr1 144340846 144340963 -52854469 - ID_B1 SINE B4 -3 221 105 5 1686 1089 288 85 10 chr1 144341822 144342127 -52853305 + MTE2b LTR MaLR 8 335 -44 5 1686 5233 47 20 0 chr1 144342138 144342794 -52852638 - L1Md_F2 LINE L1 -3 6579 5911 5 1686 229 347 0 50 chr1 144342862 144342962 -52852470 + RMER20B LTR ERVK 494 588 -39 5 1686 463 301 150 24 chr1 144343051 144343223 -52852209 + MTE-int LTR MaLR 1021 1350 -230 5 1686 306 0 0 0 chr1 144343223 144343257 -52852175 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1686 463 286 167 23 chr1 144343257 144343349 -52852083 + MTE-int LTR MaLR 1351 1472 -108 5 1686 474 289 100 78 chr1 144343428 144343788 -52851644 + MER67D LTR ERV1 7 374 -140 5 1686 24 0 0 0 chr1 144343878 144343902 -52851530 + AT_rich Low_complexity Low_complexity 1 24 0 5 1686 669 137 54 0 chr1 144344112 144344280 -52851152 + GA-rich Low_complexity Low_complexity 2 178 0 5 1686 1065 219 64 21 chr1 144344335 144344615 -52850817 + RLTR11A2 LTR ERVK 1 292 -235 5 1686 432 242 0 0 chr1 144344606 144344701 -52850731 + B1_Mur4 SINE Alu 51 145 -5 5 1686 1008 73 73 0 chr1 144344730 144344867 -52850565 + B1_Mus1 SINE Alu 2 148 0 5 1686 374 246 0 8 chr1 144345188 144345319 -52850113 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 1686 27 73 0 0 chr1 144345745 144345800 -52849632 + AT_rich Low_complexity Low_complexity 1 55 0 5 1686 23 0 0 0 chr1 144345900 144345923 -52849509 + AT_rich Low_complexity Low_complexity 1 23 0 5 1686 5680 148 27 58 chr1 144346329 144347061 -52848371 - Lx4A LINE L1 -394 6664 5967 5 1686 1073 89 7 20 chr1 144347061 144347210 -52848222 - B1_Mus1 SINE Alu 0 148 2 5 1686 5680 134 13 24 chr1 144347210 144347637 -52847795 - Lx4A LINE L1 -1092 5966 5537 5 1686 24 67 0 0 chr1 144348601 144348646 -52846786 + AT_rich Low_complexity Low_complexity 1 45 0 5 1686 369 296 19 107 chr1 144349400 144349422 -52846010 + ID_B1 SINE B4 73 217 -7 5 1686 746 199 15 7 chr1 144349422 144349559 -52845873 + B1_Mur4 SINE Alu 6 143 -7 5 1686 324 0 0 0 chr1 144349566 144349602 -52845830 + (TAA)n Simple_repeat Simple_repeat 1 36 0 5 1686 430 327 72 57 chr1 144349694 144350356 -52845076 + Lx7 LINE L1 3672 4343 -1537 5 1686 1133 233 55 29 chr1 144350480 144350901 -52844531 + Lx9 LINE L1 5560 6029 -1615 5 1686 2141 254 22 4 chr1 144351105 144351595 -52843837 + Lx9 LINE L1 6422 6920 -724 5 1686 450 0 0 0 chr1 144352463 144352513 -52842919 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1686 244 310 29 98 chr1 144352623 144352827 -52842605 + Lx7 LINE L1 5708 5897 -1799 5 1686 1150 318 101 6 chr1 144353109 144353469 -52841963 + Lx8 LINE L1 6176 6560 -913 5 1686 296 24 24 0 chr1 144353469 144353510 -52841922 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1686 1150 318 101 6 chr1 144353510 144353662 -52841770 + Lx8 LINE L1 6561 6737 -736 5 1686 749 390 97 5 chr1 144353663 144354075 -52841357 - ORR1E-int LTR MaLR -305 1275 826 5 1686 2920 86 26 0 chr1 144354313 144354732 -52840700 + L1_Mus3 LINE L1 6202 6631 -7 5 1686 516 324 5 38 chr1 144354810 144354996 -52840436 - ORR1E-int LTR MaLR -1382 198 19 5 1686 246 197 49 0 chr1 144355021 144355082 -52840350 - ORR1E LTR MaLR 0 379 316 5 1686 570 158 36 0 chr1 144355115 144355280 -52840152 + (TCTG)n Simple_repeat Simple_repeat 4 174 0 5 1686 450 360 75 22 chr1 144355547 144355774 -52839658 - ORR1E LTR MaLR -120 239 1 5 1686 885 294 42 25 chr1 144355924 144356399 -52839033 - L1_Mur3 LINE L1 -2001 3879 3397 5 1686 481 307 215 32 chr1 144356417 144356858 -52838574 + Lx8 LINE L1 6311 6832 -641 5 1686 570 360 15 7 chr1 144356866 144357135 -52838297 + Lx8 LINE L1 7082 7352 -121 5 1686 35 24 0 0 chr1 144357217 144357259 -52838173 + AT_rich Low_complexity Low_complexity 1 42 0 5 1686 266 339 0 0 chr1 144357382 144357494 -52837938 + L1_Mur3 LINE L1 3403 3514 -2366 5 1686 253 250 53 0 chr1 144357708 144357840 -52837592 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 1686 396 266 68 20 chr1 144358349 144358495 -52836937 + Lx6 LINE L1 7300 7452 -8 5 1686 21 36 0 0 chr1 144359407 144359435 -52835997 + AT_rich Low_complexity Low_complexity 1 28 0 5 1686 734 268 71 13 chr1 144360197 144360579 -52834853 - Lx9 LINE L1 -1 7643 7240 5 1686 1999 278 88 2 chr1 144360582 144361137 -52834295 - Lx6 LINE L1 -100 7360 6758 5 1686 2432 224 29 78 chr1 144361170 144361485 -52833947 - L1_Mur3 LINE L1 -958 4922 4640 5 1686 198 0 0 0 chr1 144361485 144361507 -52833925 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 5 1686 2432 224 29 78 chr1 144361507 144361945 -52833487 - L1_Mur3 LINE L1 -1241 4639 4206 5 1686 389 332 104 0 chr1 144361968 144362170 -52833262 + Lx7 LINE L1 7212 7434 -26 5 1686 553 141 0 0 chr1 144362193 144362292 -52833140 - L1_Mur3 LINE L1 -1686 4194 4096 5 1686 426 88 0 0 chr1 144362304 144362361 -52833071 + B2_Mm2 SINE B2 2 58 -137 5 1686 437 216 0 43 chr1 144362385 144362501 -52832931 - L1_Mur3 LINE L1 -1795 4085 3975 5 1686 719 290 10 0 chr1 144362502 144362695 -52832737 + Lx9 LINE L1 7028 7222 -422 5 1686 346 229 0 0 chr1 144362723 144362784 -52832648 + Lx6 LINE L1 7053 7113 -347 5 1686 472 250 7 36 chr1 144362811 144362972 -52832460 + Lx7 LINE L1 7555 7693 -3 5 1686 218 147 0 0 chr1 144362984 144363018 -52832414 + B3A SINE B2 2 35 -163 5 1686 1322 87 0 0 chr1 144363051 144363236 -52832196 - L1_Mus2 LINE L1 -3 6563 6379 5 1686 2381 79 3 11 chr1 144363794 144364124 -52831308 - L1_Mus2 LINE L1 -177 6459 6097 5 1686 504 49 0 0 chr1 144364123 144364184 -52831248 + L1_Mus2 LINE L1 5975 6035 -531 5 1686 531 321 0 7 chr1 144364211 144364352 -52831080 + B3 SINE B2 70 209 -7 5 1686 266 0 29 0 chr1 144365654 144365688 -52829744 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1686 276 100 0 0 chr1 144366369 144366409 -52829023 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1686 344 282 50 25 chr1 144366447 144366567 -52828865 - Lx8 LINE L1 -92 7381 7259 5 1686 405 0 0 0 chr1 144366585 144366630 -52828802 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1686 29 0 0 0 chr1 144366769 144366798 -52828634 + AT_rich Low_complexity Low_complexity 1 29 0 5 1686 1105 351 96 14 chr1 144367063 144367690 -52827742 - Lx8 LINE L1 -98 7375 6698 5 1686 279 344 119 59 chr1 144367713 144367795 -52827637 + Lx8 LINE L1 5254 5366 -520 5 1686 513 47 0 0 chr1 144367795 144367859 -52827573 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1686 180 0 0 0 chr1 144367859 144367878 -52827554 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 1686 770 318 83 56 chr1 144367878 144368839 -52826593 + Lx8 LINE L1 5367 6369 -1104 5 1686 243 0 0 0 chr1 144368839 144368866 -52826566 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 5 1686 4149 48 15 4 chr1 144368866 144369390 -52826042 + L1Md_F2 LINE L1 6040 6569 -13 5 1686 205 167 28 0 chr1 144369588 144369624 -52825808 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 5 1686 291 139 52 59 chr1 144369617 144369770 -52825662 + (TA)n Simple_repeat Simple_repeat 2 153 0 5 1686 298 263 22 50 chr1 144369722 144369902 -52825530 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 5 1686 430 231 34 23 chr1 144369815 144369992 -52825440 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 5 1686 665 245 70 20 chr1 144370325 144370525 -52824907 + Lx9 LINE L1 6434 6643 -1001 6 1686 1348 323 67 29 chr1 144370994 144371692 -52823740 + Lx9 LINE L1 6749 7473 -171 6 1686 465 180 0 0 chr1 144372386 144372475 -52822957 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1686 22 70 0 0 chr1 144372480 144372523 -52822909 + AT_rich Low_complexity Low_complexity 1 43 0 6 1686 26 30 0 0 chr1 144372562 144372595 -52822837 + AT_rich Low_complexity Low_complexity 1 33 0 6 1686 494 337 32 27 chr1 144372669 144372855 -52822577 + B3A SINE B2 1 187 -11 6 1686 24 32 0 0 chr1 144373062 144373093 -52822339 + AT_rich Low_complexity Low_complexity 1 31 0 6 1686 4798 35 2 0 chr1 144373183 144373763 -52821669 + L1Md_T LINE L1 6002 6582 0 6 1686 1500 325 54 22 chr1 144373809 144374526 -52820906 + Lx8 LINE L1 6368 7107 -366 5 1686 282 321 185 32 chr1 144374594 144374810 -52820622 + Lx8 LINE L1 7220 7468 -5 5 1686 23 33 0 0 chr1 144374961 144374991 -52820441 + AT_rich Low_complexity Low_complexity 1 30 0 6 1686 26 0 0 0 chr1 144375042 144375068 -52820364 + AT_rich Low_complexity Low_complexity 1 26 0 6 1686 3143 183 30 10 chr1 144376264 144376888 -52818544 - Lx2B LINE L1 0 7000 6364 6 1686 2768 179 30 9 chr1 144377073 144377615 -52817817 - Lx4A LINE L1 -2 7056 6504 6 1686 960 146 0 6 chr1 144378180 144378346 -52817086 - Lx LINE L1 -8 6646 6482 6 1686 232 379 55 87 chr1 144378775 144379029 -52816403 + MLT1E3 LTR MaLR 293 538 -86 6 1686 596 14 0 14 chr1 144379331 144379405 -52816027 + (GAA)n Simple_repeat Simple_repeat 1 73 0 6 1686 2690 146 55 20 chr1 144379464 144379954 -52815478 + Lx2A1 LINE L1 6502 7008 0 6 1686 722 202 8 0 chr1 144379998 144380127 -52815305 + B1_Mur3 SINE Alu 10 139 -10 6 1686 853 276 34 81 chr1 144380773 144381096 -52814336 - MER90 LTR ERV1 -267 308 1 6 1686 256 359 27 27 chr1 144381172 144381358 -52814074 + L2 LINE L2 2324 2509 -910 6 1686 464 267 53 179 chr1 144381721 144381838 -52813594 + RLTR23 LTR ERV1 1 104 -326 6 1686 217 0 0 57 chr1 144381838 144381873 -52813559 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1686 464 267 53 179 chr1 144381873 144382247 -52813185 + RLTR23 LTR ERV1 105 430 0 6 1686 8753 24 0 0 chr1 144382713 144384425 -52811007 - L1Md_T LINE L1 0 6582 4872 6 1686 1664 346 76 40 chr1 144384448 144384861 -52810571 + Lx8 LINE L1 6051 6475 -998 6 1686 3224 56 2 0 chr1 144384861 144385256 -52810176 - MTA_Mm LTR MaLR 0 396 1 6 1686 1664 346 76 40 chr1 144385256 144386210 -52809222 + Lx8 LINE L1 6476 7468 -5 6 1686 465 19 0 0 chr1 144386424 144386478 -52808954 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1686 219 36 0 0 chr1 144386481 144386509 -52808923 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 6 1686 463 265 69 91 chr1 144386791 144387111 -52808321 + L1M3 LINE L1 4406 4718 -1422 6 1686 230 228 35 0 chr1 144387114 144387171 -52808261 + T-rich Low_complexity Low_complexity 2 60 0 6 1686 400 296 40 0 chr1 144387173 144387298 -52808134 - Lx2B LINE L1 -13 6987 6858 6 1686 444 309 32 16 chr1 144387314 144387439 -52807993 - RSINE1 SINE B4 -19 146 20 6 1686 22 0 0 0 chr1 144387449 144387471 -52807961 + AT_rich Low_complexity Low_complexity 1 22 0 6 1686 24 21 0 60 chr1 144387489 144387539 -52807893 + AT_rich Low_complexity Low_complexity 1 47 0 6 1686 243 320 106 4 chr1 144387554 144387789 -52807643 + L1M3 LINE L1 4832 5090 -1050 6 1686 1955 298 16 3 chr1 144389717 144390293 -52805139 - Lx9 LINE L1 -706 6938 6356 6 1686 724 283 48 52 chr1 144390350 144390713 -52804719 - BGLII_B LTR ERVK -27 414 26 6 1686 225 65 0 0 chr1 144390930 144390961 -52804471 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1686 41093 6 0 0 chr1 144390970 144397344 -52798088 - L1Md_A LINE L1 0 6582 208 6 1686 559 328 8 4 chr1 144397597 144397842 -52797590 + Lx9 LINE L1 7221 7466 -178 6 1686 360 0 0 0 chr1 144397849 144397889 -52797543 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1686 342 0 0 0 chr1 144397889 144397927 -52797505 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1686 21 36 0 0 chr1 144398082 144398110 -52797322 + AT_rich Low_complexity Low_complexity 1 28 0 6 1686 195 42 0 0 chr1 144398110 144398134 -52797298 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 6 1686 1512 258 46 7 chr1 144398144 144398581 -52796851 - Lx4B LINE L1 -31 7027 6574 6 1686 2286 181 52 19 chr1 144398580 144399116 -52796316 + L1_Mur2 LINE L1 4745 5298 -579 6 1686 34724 50 3 9 chr1 144399113 144404294 -52791138 + L1Md_F2 LINE L1 439 5583 -300 6 1686 7797 49 3 19 chr1 144404297 144405295 -52790137 + L1Md_F2 LINE L1 5587 6568 -14 6 1686 2280 186 4 32 chr1 144405301 144405774 -52789658 + L1_Mur2 LINE L1 5282 5741 -136 6 1686 24 32 0 0 chr1 144406076 144406107 -52789325 + AT_rich Low_complexity Low_complexity 1 31 0 6 1686 677 127 0 33 chr1 144406184 144406306 -52789126 - L1_Mm LINE L1 -1501 4382 4265 6 1686 1618 180 119 6 chr1 144407520 144407872 -52787560 + L1_Mur2 LINE L1 4600 4991 -886 6 1686 471 146 33 22 chr1 144407870 144407961 -52787471 + Lx LINE L1 6432 6523 -131 6 1686 466 107 0 23 chr1 144407934 144408008 -52787424 + Lx2 LINE L1 6913 6986 -11 6 1686 258 32 0 0 chr1 144408008 144408039 -52787393 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6 1686 466 107 0 23 chr1 144408039 144408050 -52787382 + Lx2 LINE L1 6987 6996 -1 6 1686 236 178 0 22 chr1 144408385 144408431 -52787001 - ORR1B1 LTR MaLR -11 356 312 6 1686 494 244 114 0 chr1 144408452 144408575 -52786857 - B1_Mur4 SINE Alu -12 138 2 6 1686 1587 215 22 35 chr1 144408575 144408933 -52786499 - ORR1B1 LTR MaLR -41 353 1 6 1686 246 32 0 0 chr1 144408977 144409008 -52786424 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1686 1731 271 14 74 chr1 144410407 144410786 -52784646 + Lx5 LINE L1 6527 6900 -150 6 1686 1125 114 11 0 chr1 144410786 144410961 -52784471 - L1_Mus3 LINE L1 -10 6628 6452 6 1686 1731 271 14 74 chr1 144410961 144411138 -52784294 + Lx5 LINE L1 6901 7050 0 6 1686 240 35 0 0 chr1 144411894 144411923 -52783509 + (TTAGGG)n Simple_repeat Simple_repeat 3 31 0 6 1686 237 33 0 0 chr1 144412625 144412655 -52782777 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1686 572 312 36 31 chr1 144412856 144413048 -52782384 - B3A SINE B2 0 198 6 6 1686 315 322 45 22 chr1 144413313 144413438 -52781994 + B1F SINE Alu 11 134 -15 6 1686 448 333 137 29 chr1 144413914 144414155 -52781277 + MTE2a LTR MaLR 1 267 -112 6 1686 708 138 0 0 chr1 144414159 144414275 -52781157 + (TCCC)n Simple_repeat Simple_repeat 3 118 0 6 1686 261 0 0 0 chr1 144414277 144414306 -52781126 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 6 1686 1081 86 0 0 chr1 144414976 144415115 -52780317 + B1_Mm SINE Alu 1 139 -8 6 1686 206 81 27 0 chr1 144415115 144415152 -52780280 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1686 4041 179 83 92 chr1 144415190 144416008 -52779424 + RMER19B LTR ERVK 1 767 -135 6 1686 899 80 28 21 chr1 144416008 144416149 -52779283 - L1Md_F2 LINE L1 -12 6570 6429 6 1686 4041 179 83 92 chr1 144416149 144416240 -52779192 + RMER19B LTR ERVK 768 901 -1 6 1686 24 0 0 0 chr1 144416994 144417018 -52778414 + AT_rich Low_complexity Low_complexity 1 24 0 6 1686 24 77 0 0 chr1 144417092 144417144 -52778288 + AT_rich Low_complexity Low_complexity 1 52 0 6 1686 1311 159 11 53 chr1 144417214 144417479 -52777953 - Lx2 LINE L1 -2 6995 6742 6 1686 507 115 2 6 chr1 144417479 144417579 -52777853 + L1_Mm LINE L1 1909 2006 -3877 6 1686 2321 207 31 29 chr1 144418224 144418737 -52776695 - RMER20A LTR ERVK -2 514 1 6 1686 1117 272 78 31 chr1 144418737 144419092 -52776340 - MTD LTR MaLR -47 372 1 6 1686 483 123 0 0 chr1 144419287 144419368 -52776064 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1686 395 38 0 19 chr1 144419854 144419908 -52775524 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1686 232 266 18 35 chr1 144420073 144420186 -52775246 + A-rich Low_complexity Low_complexity 5 115 0 6 1686 661 214 24 86 chr1 144420292 144420502 -52774930 - Lx7 LINE L1 -335 7361 7165 6 1686 258 267 211 21 chr1 144420509 144420788 -52774644 - L1_Rod LINE L1 -2406 3441 3110 6 1686 342 299 108 14 chr1 144421270 144421409 -52774023 - MER5B DNA MER1_type -10 168 17 6 1686 246 143 40 54 chr1 144421608 144421682 -52773750 + T-rich Low_complexity Low_complexity 1 73 0 6 1686 317 38 74 25 chr1 144421685 144421766 -52773666 + (TTTG)n Simple_repeat Simple_repeat 2 86 0 6 1686 904 144 7 58 chr1 144421767 144421922 -52773510 - B1_Mus1 SINE Alu 0 148 2 6 1686 6799 64 39 3 chr1 144423759 144424668 -52770764 + L1Md_F2 LINE L1 5642 6582 0 6 1686 1425 122 0 5 chr1 144424871 144425086 -52770346 - MTB LTR MaLR -5 395 182 6 1686 7504 105 16 1 chr1 144425107 144426474 -52768958 - L1_Mus3 LINE L1 0 6638 5255 6 1686 1384 78 0 5 chr1 144426474 144426667 -52768765 - MTB LTR MaLR -208 192 1 6 1686 5316 139 51 80 chr1 144426667 144427797 -52767635 - MTB-int LTR MaLR 0 1098 1 6 1686 2693 78 39 3 chr1 144427797 144428002 -52767430 - MTB LTR MaLR 0 400 184 6 1686 5510 32 5 0 chr1 144428002 144428655 -52766777 - L1Md_T LINE L1 0 6582 5927 6 1686 2693 78 39 3 chr1 144428655 144428835 -52766597 - MTB LTR MaLR -217 183 2 6 1686 344 272 98 25 chr1 144428847 144429158 -52766274 - L1MD LINE L1 -2892 3254 2918 6 1686 40 21 0 0 chr1 144430195 144430242 -52765190 + AT_rich Low_complexity Low_complexity 1 47 0 6 1686 5999 121 21 68 chr1 144430637 144431495 -52763937 - Lx LINE L1 -2 6652 5842 6 1686 1107 102 0 0 chr1 144431495 144431642 -52763790 - B1_Mm SINE Alu 0 147 1 6 1686 5999 121 21 68 chr1 144431642 144431804 -52763628 - Lx LINE L1 -813 5841 5680 6 1686 1399 113 16 152 chr1 144431845 144432148 -52763284 + Lx LINE L1 5919 6180 -474 6 1686 5174 118 17 32 chr1 144432148 144433046 -52762386 + RMER17D LTR ERVK 1 884 -5 6 1686 2598 137 60 9 chr1 144433052 144433502 -52761930 + Lx LINE L1 6175 6647 -7 6 1686 409 267 66 7 chr1 144433513 144433666 -52761766 + L1M2 LINE L1 5477 5639 -673 6 1686 2279 93 64 6 chr1 144434384 144434729 -52760703 + L1Md_F2 LINE L1 6206 6570 -12 6 1686 343 357 58 41 chr1 144434740 144435115 -52760317 + MLT1B LTR MaLR 42 426 -41 6 1686 800 87 108 7 chr1 144435240 144435379 -52760053 - L1_Mus3 LINE L1 -7 6631 6479 6 1686 2853 95 5 2 chr1 144435640 144436039 -52759393 + MTB LTR MaLR 1 400 0 6 1686 291 329 49 29 chr1 144437711 144437955 -52757477 - L1_Mur2 LINE L1 -281 5596 5348 6 1686 38 39 0 0 chr1 144437975 144438027 -52757405 + AT_rich Low_complexity Low_complexity 1 52 0 6 1686 1231 221 231 5 chr1 144438106 144438526 -52756906 + Lx9 LINE L1 6797 7311 -333 6 1686 1167 200 35 4 chr1 144438526 144438757 -52756675 - RLTR26 LTR ERVK 0 642 405 6 1686 908 116 48 37 chr1 144438760 144438948 -52756484 - RMER17A2 LTR ERVK -716 190 1 6 1686 303 186 104 162 chr1 144438948 144439121 -52756311 + Lx9 LINE L1 7306 7468 -176 6 1686 248 200 13 0 chr1 144439121 144439196 -52756236 + GA-rich Low_complexity Low_complexity 1 76 0 7 1686 1470 197 9 37 chr1 144439202 144439529 -52755903 + Lx3B LINE L1 6650 6967 -6 7 210 1850 68 98 0 chr1 144441108 144441372 -52754060 + L1_Mus2 LINE L1 5587 5876 -690 7 1687 231 88 0 0 chr1 144441372 144441406 -52754026 + (CTATA)n Simple_repeat Simple_repeat 3 36 0 7 1687 484 359 6 37 chr1 144441760 144441922 -52753510 - RSINE1 SINE B4 -3 162 6 7 1687 830 162 0 155 chr1 144441934 144442035 -52753397 - L1_Mur2 LINE L1 -1048 4829 4734 7 1687 219 36 0 0 chr1 144442035 144442063 -52753369 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1687 830 162 0 155 chr1 144442063 144442180 -52753252 - L1_Mur2 LINE L1 -1144 4733 4645 7 1687 8109 43 6 0 chr1 144442181 144443171 -52752261 - L1Md_F2 LINE L1 0 6582 5587 7 1687 1475 140 8 19 chr1 144443165 144443428 -52752004 - L1_Mur2 LINE L1 -1196 4681 4422 7 1687 29 28 0 0 chr1 144443699 144443735 -52751697 + AT_rich Low_complexity Low_complexity 1 36 0 7 1687 33307 71 4 4 chr1 144444242 144449440 -52745992 + L1Md_F2 LINE L1 389 5586 -297 7 1687 8081 46 1 1 chr1 144449440 144450421 -52745011 + L1Md_F2 LINE L1 5587 6567 -15 7 1687 987 311 61 21 chr1 144451116 144451772 -52743660 + L1MA6 LINE L1 5388 6069 -231 7 1687 371 216 9 0 chr1 144452523 144452639 -52742793 + (TA)n Simple_repeat Simple_repeat 2 118 0 7 1687 489 314 58 11 chr1 144452640 144452814 -52742618 - B3A SINE B2 -16 182 1 7 1687 45 55 0 0 chr1 144452814 144452887 -52742545 + AT_rich Low_complexity Low_complexity 1 73 0 7 1687 2202 127 59 8 chr1 144453466 144453824 -52741608 + Lx3A LINE L1 6590 6965 -16 7 1687 329 62 21 0 chr1 144453824 144453872 -52741560 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 7 1687 3004 216 104 48 chr1 144453877 144454676 -52740756 + Lx2B LINE L1 6154 6997 -3 7 1687 2869 51 38 3 chr1 144454875 144455247 -52740185 - L1_Mus1 LINE L1 0 6567 6183 7 1687 21 0 0 0 chr1 144456025 144456046 -52739386 + AT_rich Low_complexity Low_complexity 1 21 0 7 1687 324 48 0 0 chr1 144457137 144457179 -52738253 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1687 6658 135 13 18 chr1 144457465 144458588 -52736844 - Lx3A LINE L1 -2 6979 5862 7 1687 449 86 0 0 chr1 144458664 144458722 -52736710 - L1_Mur1 LINE L1 -351 5535 5478 7 1687 1915 130 0 28 chr1 144458723 144459040 -52736392 + L1_Mur1 LINE L1 5539 5846 -40 7 1687 290 207 51 163 chr1 144459087 144459185 -52736247 - ORR1D1-int LTR MaLR -996 967 881 7 1687 492 62 0 0 chr1 144459204 144459268 -52736164 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1687 2540 270 8 8 chr1 144459301 144459943 -52735489 - ORR1D1-int LTR MaLR -728 642 1 7 1687 656 275 134 55 chr1 144459943 144460082 -52735350 - ORR1D1 LTR MaLR -2 372 212 7 1687 2583 98 18 8 chr1 144460082 144460471 -52734961 + L1_Mus4 LINE L1 6237 6629 -7 7 1687 656 275 134 55 chr1 144460471 144460674 -52734758 - ORR1D1 LTR MaLR -163 211 3 7 1687 2858 163 57 7 chr1 144461459 144462020 -52733412 - Lx2A1 LINE L1 0 7008 6420 7 1687 591 112 0 0 chr1 144462574 144462663 -52732769 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1687 232 337 0 11 chr1 144463190 144463280 -52732152 + L1M5 LINE L1 5488 5576 -586 7 1687 7833 60 5 0 chr1 144463335 144464369 -52731063 - L1Md_F2 LINE L1 -12 6570 5532 7 1687 3561 64 0 0 chr1 144464370 144464838 -52730594 + L1_Mm LINE L1 3927 4394 -1489 7 1687 1528 70 5 0 chr1 144464835 144465035 -52730397 + L1_Mm LINE L1 4786 4986 -897 7 1687 645 262 68 21 chr1 144466530 144466811 -52728621 + L1_Mur3 LINE L1 1349 1642 -4238 7 1687 266 312 42 0 chr1 144466817 144466913 -52728519 + L1_Rod LINE L1 2128 2227 -3620 7 1687 1992 286 21 18 chr1 144466912 144467593 -52727839 + L1_Mur3 LINE L1 4425 5107 -773 7 1687 36 0 0 0 chr1 144467639 144467675 -52727757 + AT_rich Low_complexity Low_complexity 1 36 0 7 1687 647 342 51 17 chr1 144467730 144468141 -52727291 + Lx8 LINE L1 6868 7292 -181 7 1687 201 39 0 0 chr1 144468293 144468319 -52727113 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1687 516 70 0 0 chr1 144468319 144468390 -52727042 - B1_Mm SINE Alu -3 144 74 7 1687 26 30 0 0 chr1 144468390 144468423 -52727009 + AT_rich Low_complexity Low_complexity 1 33 0 7 1687 221 186 0 56 chr1 144468814 144468908 -52726524 + GA-rich Low_complexity Low_complexity 2 92 0 7 1687 633 27 0 0 chr1 144468908 144468983 -52726449 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 7 1687 221 186 0 56 chr1 144468983 144469013 -52726419 + polypurine Low_complexity Low_complexity 93 118 0 7 1687 503 268 96 50 chr1 144469107 144469327 -52726105 + L1M5 LINE L1 4837 5066 -1080 7 1687 24 0 0 0 chr1 144469928 144469952 -52725480 + AT_rich Low_complexity Low_complexity 1 24 0 7 1687 534 227 15 0 chr1 144470082 144470214 -52725218 - Lx7 LINE L1 0 7696 7563 7 1687 213 163 23 0 chr1 144470442 144470485 -52724947 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1687 28 29 0 0 chr1 144470567 144470602 -52724830 + AT_rich Low_complexity Low_complexity 1 35 0 7 1687 22 56 0 0 chr1 144472501 144472537 -52722895 + AT_rich Low_complexity Low_complexity 1 36 0 7 1687 4423 139 38 14 chr1 144473234 144473970 -52721462 + Lx3A LINE L1 6220 6973 -8 7 1687 23 0 0 0 chr1 144473971 144473994 -52721438 + AT_rich Low_complexity Low_complexity 1 23 0 7 1687 758 106 8 0 chr1 144474358 144474481 -52720951 + (GA)n Simple_repeat Simple_repeat 1 124 0 7 1687 1298 246 25 112 chr1 144474887 144475358 -52720074 + RLTR20D LTR ERVK 4 433 -135 7 1687 829 322 4 8 chr1 144475355 144475590 -52719842 + RLTR20D LTR ERVK 324 557 -11 7 1687 249 57 0 0 chr1 144475590 144475625 -52719807 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1687 240 405 106 29 chr1 144476297 144476572 -52718860 + LTR88b LTR Gypsy? 510 805 -32 7 1687 343 369 48 0 chr1 144477098 144477304 -52718128 - L1M4 LINE L1 -474 5704 5489 7 1687 1234 168 28 0 chr1 144477356 144477570 -52717862 + URR1A DNA MER1_type 1 220 -6 7 1687 4424 97 5 11 chr1 144477600 144478237 -52717195 + L1_Mus3 LINE L1 5999 6631 -7 7 1687 288 111 0 0 chr1 144478673 144478727 -52716705 + (T)n Simple_repeat Simple_repeat 1 54 0 7 1687 989 33 0 0 chr1 144478744 144478866 -52716566 + B1_Mus1 SINE Alu 18 139 -9 7 1687 356 40 20 0 chr1 144478866 144478916 -52716516 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1687 967 155 5 64 chr1 144479415 144479635 -52715797 + Lx LINE L1 6448 6654 0 7 1687 26 64 0 0 chr1 144479654 144479701 -52715731 + AT_rich Low_complexity Low_complexity 1 47 0 7 1687 755 50 0 10 chr1 144479707 144479808 -52715624 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 7 1687 1570 83 117 0 chr1 144480495 144480725 -52714707 - L1_Mus1 LINE L1 -1 6566 6310 7 1687 5468 67 3 0 chr1 144480733 144481431 -52714001 + L1_Mus1 LINE L1 5587 6286 -281 7 1687 2121 96 65 20 chr1 144481468 144481819 -52713613 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1687 28952 18 1 1 chr1 144481823 144485090 -52710342 - IAPEz-int LTR ERVK -3 6478 3210 7 1687 7500 84 86 71 chr1 144485089 144486376 -52709056 - IAPEz-int LTR ERVK -5168 1313 8 7 1687 2121 96 65 20 chr1 144486376 144486727 -52708705 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1687 21 0 0 0 chr1 144487112 144487133 -52708299 + AT_rich Low_complexity Low_complexity 1 21 0 7 1687 975 102 0 0 chr1 144487188 144487325 -52708107 + B1_Mm SINE Alu 11 147 0 7 1687 285 280 45 60 chr1 144487218 144487351 -52708081 + RLTR25B LTR ERVK 442 572 -456 7 1687 334 294 56 56 chr1 144487623 144487749 -52707683 - MTD LTR MaLR 0 419 294 7 1687 1186 41 0 13 chr1 144487754 144487903 -52707529 + B1_Mm SINE Alu 1 147 0 7 1687 291 121 0 0 chr1 144487905 144487963 -52707469 + (A)n Simple_repeat Simple_repeat 1 58 0 7 1687 610 306 58 69 chr1 144487963 144488266 -52707166 - MTD LTR MaLR -104 296 6 7 1687 7681 158 21 41 chr1 144488847 144490339 -52705093 + Lx2B LINE L1 5543 7000 0 7 1687 532 250 19 61 chr1 144490765 144490978 -52704454 + Lx7 LINE L1 7493 7696 0 7 1687 1673 148 0 0 chr1 144491603 144491866 -52703566 - Lx LINE L1 -1030 5624 5362 7 1687 267 122 0 0 chr1 144491861 144491902 -52703530 + Lx LINE L1 5625 5665 -989 7 1687 910 61 0 0 chr1 144491924 144492039 -52703393 - Lx LINE L1 -713 5941 5827 7 1687 4471 153 130 18 chr1 144492045 144492931 -52702501 - L1_Mus4 LINE L1 0 6636 5652 7 1687 3785 163 34 9 chr1 144492947 144493634 -52701798 + Lx LINE L1 5944 6647 -7 7 1687 1000 128 0 0 chr1 144493635 144493783 -52701649 + Lx LINE L1 5833 5980 -674 7 1687 281 58 17 22 chr1 144493781 144493841 -52701591 + Lx LINE L1 6946 6990 -7 7 1687 371 21 0 20 chr1 144493845 144493894 -52701538 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 7 1687 297 0 0 0 chr1 144493970 144494003 -52701429 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7 1687 1810 190 58 6 chr1 144494005 144494365 -52701067 - Lx LINE L1 -9 6645 6267 7 1687 2631 96 11 5 chr1 144494756 144495133 -52700299 - L1_Mus3 LINE L1 -2 6636 6258 7 1687 2096 90 0 0 chr1 144495472 144495749 -52699683 - L1_Mm LINE L1 -87 5796 5520 7 1687 2848 97 2 22 chr1 144495752 144496165 -52699267 + L1_Mus2 LINE L1 6162 6566 0 7 1687 21 36 0 0 chr1 144496701 144496729 -52698703 + AT_rich Low_complexity Low_complexity 1 28 0 7 1687 627 119 0 41 chr1 144497253 144497376 -52698056 + Lx LINE L1 6536 6653 -1 7 1687 246 128 0 0 chr1 144497455 144497494 -52697938 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1687 21 0 0 0 chr1 144497934 144497955 -52697477 + AT_rich Low_complexity Low_complexity 1 21 0 7 1687 1905 145 51 6 chr1 144498595 144498908 -52696524 + ORR1A4 LTR MaLR 1 327 -2 7 1687 261 0 0 0 chr1 144499031 144499060 -52696372 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1687 3948 175 55 11 chr1 144499060 144499818 -52695614 - RLTR25A LTR ERVK -298 805 14 7 1687 402 21 0 0 chr1 144499948 144499995 -52695437 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1687 461 354 65 62 chr1 144500245 144500570 -52694862 - MTD LTR MaLR 0 419 94 1 1687 22 0 0 0 chr1 144501137 144501159 -52694273 + AT_rich Low_complexity Low_complexity 1 22 0 2 1687 592 320 89 12 chr1 144504585 144504832 -52690600 - MLT1H-int LTR MaLR -1037 372 107 3 1687 201 39 0 0 chr1 144504930 144504956 -52690476 + (CCA)n Simple_repeat Simple_repeat 1 26 0 4 1687 1138 82 0 0 chr1 144505463 144505609 -52689823 + B1_Mus2 SINE Alu 1 146 -1 5 1687 387 0 0 0 chr1 144505609 144505652 -52689780 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1687 4019 121 11 19 chr1 144505779 144506428 -52689004 - Lx LINE L1 0 6654 6011 7 1687 531 323 0 34 chr1 144506467 144506672 -52688760 - Lx8 LINE L1 -98 7375 7178 8 1687 6195 165 61 15 chr1 144506801 144507929 -52687503 - Lx4A LINE L1 -11 7047 5868 9 1687 192 111 0 0 chr1 144508056 144508092 -52687340 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1687 465 19 0 0 chr1 144508176 144508230 -52687202 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1687 2545 56 3 3 chr1 144508566 144508891 -52686541 + IAPEY_LTR LTR ERVK 55 379 -6 1 1687 2913 150 14 22 chr1 144508893 144509569 -52685863 + IAPEy-int LTR ERVK 3 1058 -6455 1 1687 21633 49 4 6 chr1 144509569 144512283 -52683149 + IAPEy-int LTR ERVK 4804 7513 0 1 1687 2604 49 6 3 chr1 144512283 144512613 -52682819 + IAPEY_LTR LTR ERVK 55 385 0 1 1687 2215 261 48 56 chr1 144512614 144513558 -52681874 + L1_Rod LINE L1 3602 4536 -1604 1 1687 1873 142 7 0 chr1 144514287 144514597 -52680835 + Lx2 LINE L1 6686 6997 0 1 1687 3953 131 17 88 chr1 144515141 144515460 -52679972 - RMER17A LTR ERVK -3 748 429 1 1687 5802 65 9 4 chr1 144515460 144516207 -52679225 + L1Md_F2 LINE L1 5819 6569 -13 1 1687 3953 131 17 88 chr1 144516207 144516692 -52678740 - RMER17A LTR ERVK -323 428 1 1 1687 492 62 0 0 chr1 144516706 144516770 -52678662 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1687 242 345 113 54 chr1 144517715 144517936 -52677496 - LTR16B1 LTR ERVL -16 447 214 1 1687 537 259 77 0 chr1 144517955 144518125 -52677307 + MER53 DNA hAT 11 193 0 2 1687 415 354 96 0 chr1 144518126 144518304 -52677128 - LTR16B1 LTR ERVL -265 215 21 1 1687 216 67 0 0 chr1 144518832 144518862 -52676570 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1687 423 260 170 9 chr1 144518999 144519216 -52676216 - Lx8 LINE L1 -136 7337 7086 2 1687 5815 96 13 7 chr1 144519537 144520377 -52675055 + Lx3_Mus LINE L1 6165 7009 0 2 1687 269 355 95 32 chr1 144520405 144520594 -52674838 + MLT1C LTR MaLR 38 238 -229 2 1687 384 298 58 17 chr1 144520968 144521101 -52674331 - MIR SINE MIR -124 144 2 2 1687 331 330 50 11 chr1 144521194 144521455 -52673977 + L1MB8 LINE L1 5599 5869 -309 2 1687 332 336 153 41 chr1 144521629 144521871 -52673561 + RMER15 LTR ERVL 294 562 -13 2 1687 229 332 62 46 chr1 144521919 144522159 -52673273 + L1MB8 LINE L1 5910 6153 -25 2 1687 371 290 59 144 chr1 144522194 144522464 -52672968 - ORR1E LTR MaLR -31 328 82 2 1687 271 75 0 70 chr1 144523755 144523812 -52671620 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 2 1687 315 0 0 0 chr1 144524116 144524151 -52671281 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1687 261 0 0 0 chr1 144524153 144524182 -52671250 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1687 557 354 84 53 chr1 144525040 144525529 -52669903 - MLT1D LTR MaLR 0 505 2 3 1687 39 38 0 0 chr1 144525862 144525915 -52669517 + AT_rich Low_complexity Low_complexity 1 53 0 3 1687 394 358 18 12 chr1 144525935 144525960 -52669472 - RSINE1 SINE B4 0 165 141 3 1687 675 87 0 0 chr1 144525960 144526064 -52669368 + (TC)n Simple_repeat Simple_repeat 2 105 0 3 1687 207 0 0 0 chr1 144526064 144526086 -52669346 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1687 394 358 18 12 chr1 144526086 144526223 -52669209 - RSINE1 SINE B4 -25 140 2 3 1687 21 0 0 0 chr1 144526235 144526256 -52669176 + AT_rich Low_complexity Low_complexity 1 21 0 3 1687 351 0 0 0 chr1 144526774 144526813 -52668619 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1687 546 16 0 0 chr1 144526918 144526981 -52668451 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1687 504 32 0 0 chr1 144526982 144527044 -52668388 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1687 276 324 39 19 chr1 144528167 144528271 -52667161 + MLT1B LTR MaLR 281 386 -4 4 1687 234 0 0 0 chr1 144528672 144528698 -52666734 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1687 30 59 0 0 chr1 144528752 144528803 -52666629 + AT_rich Low_complexity Low_complexity 1 51 0 4 1687 363 315 87 22 chr1 144529662 144529847 -52665585 - MLT1C LTR MaLR 0 467 271 4 1687 474 227 147 55 chr1 144530095 144530258 -52665174 - MTEb LTR MaLR 0 379 202 4 1687 420 71 0 0 chr1 144530258 144530314 -52665118 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 4 1687 464 347 55 28 chr1 144530316 144530497 -52664935 - MTEb LTR MaLR -163 216 31 4 1687 719 283 123 47 chr1 144530889 144530942 -52664490 - MER57D LTR ERV1 0 411 354 4 1687 3069 200 3 5 chr1 144530942 144531529 -52663903 - Lx LINE L1 -6 6648 6063 4 1687 719 283 123 47 chr1 144531529 144531857 -52663575 - MER57D LTR ERV1 -58 353 1 4 1687 195 100 0 0 chr1 144532327 144532357 -52663075 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 1687 948 145 7 0 chr1 144532357 144532502 -52662930 - B1_Mus1 SINE Alu -2 146 1 5 1687 9229 100 9 9 chr1 144532578 144534600 -52660832 - L1Md_F2 LINE L1 0 6582 4572 5 1687 15649 87 1 1 chr1 144534596 144536781 -52658651 + L1Md_F2 LINE L1 2453 4637 -1246 5 1687 255 61 0 0 chr1 144536808 144536841 -52658591 + (TTA)n Simple_repeat Simple_repeat 2 34 0 5 1687 485 216 11 86 chr1 144537634 144537821 -52657611 + GA-rich Low_complexity Low_complexity 4 176 0 5 1687 1072 236 47 14 chr1 144538391 144538666 -52656766 - Lx6 LINE L1 -3 7457 7174 5 1687 571 252 0 45 chr1 144538681 144538814 -52656618 - Lx6 LINE L1 -355 7105 6979 5 1687 2861 249 19 5 chr1 144538808 144539591 -52655841 - Lx2B LINE L1 -155 6845 6024 5 1687 1572 271 65 51 chr1 144539591 144540142 -52655290 - RMER19C LTR ERVK 0 611 53 5 1687 633 217 28 37 chr1 144540160 144540375 -52655057 - Lx2B LINE L1 -828 6172 5960 5 1687 681 158 0 0 chr1 144540375 144540495 -52654937 + CT-rich Low_complexity Low_complexity 3 122 0 5 1687 1633 148 22 4 chr1 144540496 144540768 -52654664 - ORR1A2 LTR MaLR -50 277 1 5 1687 7131 132 4 9 chr1 144540768 144541890 -52653542 - ORR1A2-int LTR MaLR 0 1963 848 5 1687 1824 156 0 0 chr1 144541894 144542189 -52653243 - Lx2B LINE L1 -1057 5943 5649 5 1687 5345 182 17 201 chr1 144542187 144543542 -52651890 + Lx3_Mus LINE L1 4031 5044 -842 5 1687 842 29 9 0 chr1 144543542 144543647 -52651785 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1687 8921 132 38 73 chr1 144543647 144545654 -52649778 + Lx3_Mus LINE L1 5045 7008 -1 5 1687 555 302 89 45 chr1 144545712 144546508 -52648924 + L1MA5A LINE L1 5265 6072 -228 6 1687 644 272 5 90 chr1 144547175 144547397 -52648035 - MTD LTR MaLR -172 247 45 6 1687 571 329 119 45 chr1 144548215 144548644 -52646788 + RMER20B LTR ERVK 186 619 -23 6 1687 22 0 0 0 chr1 144548933 144548955 -52646477 + AT_rich Low_complexity Low_complexity 1 22 0 6 1687 2894 69 8 18 chr1 144549026 144549230 -52646202 - MTA_Mm LTR MaLR 0 396 194 6 1687 180 0 0 0 chr1 144549230 144549250 -52646182 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1687 1055 94 0 0 chr1 144549250 144549388 -52646044 - B1_Mus1 SINE Alu -9 139 2 6 1687 2894 69 8 18 chr1 144549388 144549582 -52645850 - MTA_Mm LTR MaLR -203 193 2 6 1687 252 0 0 0 chr1 144550953 144550981 -52644451 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 6 1687 429 20 0 0 chr1 144552828 144552878 -52642554 + (TTA)n Simple_repeat Simple_repeat 3 52 0 6 1687 258 281 149 93 chr1 144552878 144553039 -52642393 - RMER15 LTR ERVL -1 574 405 7 1687 25730 82 11 3 chr1 144553054 144557606 -52637826 + L1Md_F LINE L1 393 5003 -880 7 1687 7054 39 14 0 chr1 144557606 144558456 -52636976 + L1Md_F2 LINE L1 5709 6570 -12 7 1687 25 31 0 0 chr1 144558459 144558491 -52636941 + AT_rich Low_complexity Low_complexity 1 32 0 7 1687 360 0 0 0 chr1 144559343 144559383 -52636049 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1687 441 0 0 0 chr1 144559383 144559432 -52636000 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 7 1687 820 154 18 49 chr1 144560971 144561135 -52634297 + Lx3B LINE L1 6808 6966 -7 7 1687 1141 63 6 6 chr1 144561148 144561308 -52634124 + (GAA)n Simple_repeat Simple_repeat 3 162 0 7 1687 1118 78 0 0 chr1 144563142 144563284 -52632148 + B1_Mus1 SINE Alu 1 142 -6 7 1687 423 0 0 0 chr1 144563287 144563334 -52632098 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1687 263 70 0 0 chr1 144563448 144563491 -52631941 - L1Md_F2 LINE L1 -12 6570 6528 8 1687 4577 63 101 119 chr1 144563788 144564049 -52631383 + L1Md_Gf LINE L1 309 599 -5923 8 1687 231 306 58 58 chr1 144564049 144564153 -52631279 + RLTR45 LTR ERVK 4 107 -375 8 1687 4577 63 101 119 chr1 144564153 144564637 -52630795 + L1Md_Gf LINE L1 600 1142 -5380 8 1687 33878 43 15 15 chr1 144564603 144568268 -52627164 + L1_Mm LINE L1 1203 4921 -962 8 1687 236 167 46 77 chr1 144568268 144568333 -52627099 - RMER20A LTR ERVK -268 248 186 8 1687 33878 43 15 15 chr1 144568333 144568987 -52626445 + L1_Mm LINE L1 4922 5586 -297 8 1687 7981 34 25 10 chr1 144568987 144569968 -52625464 + L1Md_T LINE L1 5587 6582 0 8 1687 856 245 28 0 chr1 144570193 144570409 -52625023 + URR1B DNA MER1_type 1 222 -3 8 1687 378 42 0 0 chr1 144571091 144571139 -52624293 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 8 1687 999 104 0 20 chr1 144571139 144571286 -52624146 - B1_Mus1 SINE Alu -3 145 2 8 1687 366 42 0 0 chr1 144571400 144571448 -52623984 + (TATG)n Simple_repeat Simple_repeat 2 49 0 8 1687 3699 46 4 15 chr1 144571451 144571932 -52623500 - L1Md_F3 LINE L1 -10 6574 6099 9 210 6593 63 2 5 chr1 144571939 144572793 -52622639 - L1Md_F2 LINE L1 -33 6549 5698 9 1688 7979 86 2 24 chr1 144572803 144573923 -52621509 + L1Md_F2 LINE L1 4595 5689 -194 9 1688 571 270 23 23 chr1 144574036 144574252 -52621180 - B3 SINE B2 0 216 1 9 1688 25 0 0 0 chr1 144574968 144574993 -52620439 + AT_rich Low_complexity Low_complexity 1 25 0 9 1688 207 125 0 0 chr1 144578412 144578452 -52616980 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 9 1688 602 253 7 33 chr1 144578452 144578603 -52616829 - B1_Mm SINE Alu 0 147 1 9 1688 1602 213 32 62 chr1 144578707 144579077 -52616355 + ORR1B2 LTR MaLR 1 359 -8 9 1688 226 344 118 16 chr1 144579121 144579248 -52616184 - MLT1I LTR MaLR -200 211 72 9 1688 702 24 0 0 chr1 144581157 144581241 -52614191 + (TCTCC)n Simple_repeat Simple_repeat 2 85 0 9 1688 357 241 119 14 chr1 144581658 144581801 -52613631 + Lx7 LINE L1 5651 5808 -1888 9 1688 220 191 0 60 chr1 144582589 144582639 -52612793 - B1F2 SINE Alu -85 64 18 1 1688 218 313 65 75 chr1 144582591 144582698 -52612734 - B4 SINE B4 -143 149 44 1 1688 275 267 37 6 chr1 144584830 144584992 -52610440 - RMER17C LTR ERVK -135 275 109 1 1688 454 344 73 11 chr1 144585092 144585283 -52610149 - B4A SINE B4 -89 203 1 1 1688 7563 37 4 8 chr1 144586825 144587760 -52607672 - L1Md_F3 LINE L1 -1 6583 5680 1 1688 24 91 0 0 chr1 144588151 144588217 -52607215 + AT_rich Low_complexity Low_complexity 1 66 0 1 1688 268 362 84 25 chr1 144588404 144588564 -52606868 - MIR SINE MIR -87 189 15 1 1688 432 143 0 0 chr1 144590104 144590202 -52605230 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1688 4665 80 33 23 chr1 144590454 144591118 -52604314 - L1Md_F2 LINE L1 -1 6581 5911 1 1688 366 269 9 19 chr1 144591883 144591989 -52603443 + AmnSINE1 SINE SINE 351 455 -120 1 1688 250 351 65 39 chr1 144592485 144592525 -52602907 + B4 SINE B4 42 85 -207 1 1688 451 282 1 27 chr1 144592525 144592640 -52602792 + B1_Mur4 SINE Alu 1 111 -38 1 1688 2010 125 6 6 chr1 144592640 144592977 -52602455 + Lx LINE L1 6317 6653 -1 1 1688 429 292 30 37 chr1 144592977 144592996 -52602436 + B1_Mur2 SINE Alu 112 134 -15 1 1688 978 286 48 22 chr1 144592996 144593307 -52602125 + Lx9 LINE L1 6537 6855 -789 1 1688 4094 155 29 26 chr1 144593331 144594337 -52601095 - Lx2 LINE L1 -3 6651 5647 1 1688 596 270 67 8 chr1 144594428 144594667 -52600765 - L1MA4 LINE L1 -361 5939 5687 1 1688 40 0 0 0 chr1 144594670 144594710 -52600722 + AT_rich Low_complexity Low_complexity 1 40 0 1 1688 222 37 0 0 chr1 144595009 144595036 -52600396 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1688 353 363 89 54 chr1 144595095 144595354 -52600078 - HAL1 LINE L1 -1598 909 642 1 1688 319 322 19 37 chr1 144596512 144596658 -52598774 - B1F SINE Alu -9 140 4 1 1688 1525 137 57 0 chr1 144597677 144597939 -52597493 - Lx2 LINE L1 -1032 5965 5689 1 1688 3681 113 51 10 chr1 144597935 144598525 -52596907 + Lx2 LINE L1 5951 6564 -433 1 1688 251 146 0 0 chr1 144598524 144598565 -52596867 + Lx2 LINE L1 6891 6931 -66 1 1688 495 121 0 11 chr1 144598565 144598657 -52596775 + Lx LINE L1 6557 6647 -7 1 1688 5067 58 3 0 chr1 144598961 144599597 -52595835 - L1Md_F2 LINE L1 -12 6570 5933 1 1688 518 238 203 20 chr1 144600601 144600897 -52594535 + L1_Rod LINE L1 4980 5329 -518 1 1688 1132 350 89 31 chr1 144601083 144601790 -52593642 + Lx8 LINE L1 6289 7036 -437 1 1688 534 183 8 0 chr1 144601807 144601927 -52593505 - Lx2A1 LINE L1 -919 6089 5969 1 1688 249 73 0 0 chr1 144601921 144601962 -52593470 + Lx2A1 LINE L1 6085 6125 -883 1 1688 26 0 0 0 chr1 144602037 144602063 -52593369 + AT_rich Low_complexity Low_complexity 1 26 0 1 1688 372 322 88 53 chr1 144604078 144604340 -52591092 + Lx8 LINE L1 6828 7098 -375 1 1688 1305 234 225 68 chr1 144604595 144605336 -52590096 - RMER6C LTR ERVK -1 719 1 1 1688 205 129 42 28 chr1 144605418 144605490 -52589942 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1688 1040 71 7 0 chr1 144605580 144605720 -52589712 + B1_Mm SINE Alu 1 141 -6 1 1688 1754 250 53 26 chr1 144605822 144606364 -52589068 + L1VL4 LINE L1 138 694 -5608 1 1688 8052 39 0 0 chr1 144606365 144607330 -52588102 + L1_Mm LINE L1 4676 5640 -243 1 1688 20466 156 5 7 chr1 144607328 144611352 -52584080 + L1_Mus4 LINE L1 2129 6150 -486 1 1688 2294 113 3 20 chr1 144611352 144611703 -52583729 + L1_Mus4 LINE L1 6285 6629 -7 1 1688 448 281 23 3 chr1 144612350 144612482 -52582950 - L1_Rod LINE L1 -383 5791 5590 1 1688 452 253 0 0 chr1 144612472 144612567 -52582865 + Lx2 LINE L1 6274 6368 -629 1 1688 21 57 0 0 chr1 144614273 144614308 -52581124 + AT_rich Low_complexity Low_complexity 1 35 0 1 1688 322 338 69 21 chr1 144614456 144614860 -52580572 - L1MA4A LINE L1 -374 5929 5502 1 1688 225 259 150 9 chr1 144615030 144615143 -52580289 - Lx8 LINE L1 -58 7415 7287 1 1688 411 292 73 46 chr1 144615189 144615340 -52580092 - Lx8 LINE L1 -410 7063 6909 1 1688 496 308 63 21 chr1 144615472 144615661 -52579771 + Lx8 LINE L1 6284 6480 -993 1 1688 606 99 0 0 chr1 144615666 144615757 -52579675 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1 1688 3565 231 17 7 chr1 144615800 144616555 -52578877 - Lx4B LINE L1 -4 7054 6292 1 1688 628 321 57 7 chr1 144616552 144616834 -52578598 + Lx8 LINE L1 6489 6784 -689 1 1688 676 260 16 32 chr1 144616831 144617018 -52578414 + Lx7 LINE L1 6990 7173 -523 1 1688 529 301 92 17 chr1 144617074 144617557 -52577875 - L1MA4A LINE L1 -813 5490 4904 1 1688 1222 214 194 98 chr1 144618404 144618833 -52576599 + MT2A LTR ERVL 1 470 -63 1 1688 21 57 0 0 chr1 144618836 144618871 -52576561 + AT_rich Low_complexity Low_complexity 1 35 0 1 1688 225 164 0 68 chr1 144618902 144618961 -52576471 + MLT2B1 LTR ERVL 511 565 -2 1 1688 363 328 81 17 chr1 144619139 144619330 -52576102 + MER67C LTR ERV1 139 309 -402 1 1688 245 29 29 0 chr1 144619773 144619807 -52575625 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1688 35674 48 15 3 chr1 144619950 144625109 -52570323 + L1Md_T LINE L1 399 5586 -297 1 1688 8085 49 1 0 chr1 144625109 144626102 -52569330 + L1Md_T LINE L1 5587 6580 -2 1 1688 21 0 0 0 chr1 144626476 144626497 -52568935 + AT_rich Low_complexity Low_complexity 1 21 0 1 1688 21 0 0 0 chr1 144628399 144628420 -52567012 + AT_rich Low_complexity Low_complexity 1 21 0 1 1688 369 0 0 0 chr1 144630158 144630199 -52565233 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1688 4286 142 7 32 chr1 144631424 144632056 -52563376 - Lx2 LINE L1 -1 6996 6381 1 1688 296 0 0 49 chr1 144632056 144632097 -52563335 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1688 1093 99 0 0 chr1 144632099 144632241 -52563191 - B1_Mus1 SINE Alu -6 142 1 1 1688 4286 142 7 32 chr1 144632241 144632349 -52563083 - Lx2 LINE L1 -617 6380 6272 1 1688 272 122 61 0 chr1 144632352 144632401 -52563031 + L1_Mm LINE L1 5220 5271 -612 1 1688 480 246 16 0 chr1 144632777 144632899 -52562533 + Lx9 LINE L1 6321 6444 -1200 1 1688 901 248 23 43 chr1 144632941 144633198 -52562234 + L1VL4 LINE L1 363 614 -5688 1 1688 2285 254 73 10 chr1 144633201 144633828 -52561604 + Lx9 LINE L1 6645 7311 -333 1 1688 4361 230 13 28 chr1 144633830 144634292 -52561140 + Lx6 LINE L1 6219 6676 -784 1 1688 1876 157 22 3 chr1 144634292 144634612 -52560820 - ORR1A3 LTR MaLR 0 326 1 1 1688 4361 230 13 28 chr1 144634612 144635076 -52560356 + Lx6 LINE L1 6677 7131 -329 1 1688 642 339 42 23 chr1 144636426 144636689 -52558743 + B4A SINE B4 2 269 -23 1 1688 256 83 20 20 chr1 144636739 144636788 -52558644 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1688 4558 233 34 50 chr1 144638940 144639870 -52555562 + L1_Mur3 LINE L1 676 1586 -4294 1 1688 387 0 0 0 chr1 144639870 144639913 -52555519 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1688 4558 211 52 59 chr1 144639913 144640084 -52555348 + L1_Mur3 LINE L1 1587 1736 -4144 1 1688 189 0 0 0 chr1 144640084 144640105 -52555327 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1688 450 0 0 0 chr1 144640105 144640154 -52555278 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1688 4558 211 52 59 chr1 144640154 144640995 -52554437 + L1_Mur3 LINE L1 1737 2593 -3287 1 1688 247 77 0 25 chr1 144640992 144641032 -52554400 + L1_Mur3 LINE L1 4223 4261 -1619 1 1688 345 138 0 30 chr1 144642329 144642396 -52553036 - Lx7 LINE L1 -2 7694 7630 1 1688 292 305 134 29 chr1 144642665 144642837 -52552595 - MLT1A0 LTR MaLR -3 362 173 1 1688 697 75 40 26 chr1 144643002 144643153 -52552279 + (TCTCTG)n Simple_repeat Simple_repeat 6 158 0 1 1688 381 22 0 0 chr1 144643144 144643190 -52552242 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1688 386 309 107 70 chr1 144643295 144643740 -52551692 + MLT2B2 LTR ERVL 1 520 0 1 1688 391 331 23 23 chr1 144643883 144644013 -52551419 - MER96 DNA hAT -5 170 41 1 1688 5119 153 6 9 chr1 144644262 144645157 -52550275 - L1_Mur2 LINE L1 -1192 4685 3794 1 1688 7580 167 30 7 chr1 144645167 144646755 -52548677 + Lx2B LINE L1 5371 6995 -5 1 1688 23 0 0 0 chr1 144647130 144647153 -52548279 + AT_rich Low_complexity Low_complexity 1 23 0 1 1688 1142 80 6 0 chr1 144647490 144647653 -52547779 + (GGAGAA)n Simple_repeat Simple_repeat 5 168 0 1 1688 210 37 0 0 chr1 144647655 144647682 -52547750 + (TAG)n Simple_repeat Simple_repeat 2 28 0 1 1688 246 277 55 73 chr1 144648094 144648203 -52547229 - PB1D9 SINE Alu -12 108 2 1 1688 4113 178 4 1 chr1 144648348 144649108 -52546324 - L1_Mur2 LINE L1 -520 5357 4596 1 1688 4286 183 79 16 chr1 144649127 144650663 -52544769 - L1VL4 LINE L1 -1851 1764 110 1 1688 235 246 98 15 chr1 144650664 144650796 -52544636 - MER33 DNA MER1_type -102 222 80 1 1688 510 217 0 0 chr1 144652393 144652508 -52542924 + A-rich Low_complexity Low_complexity 1 115 0 1 1688 3615 146 0 8 chr1 144652531 144653133 -52542299 + L1_Mm LINE L1 4595 5191 -692 1 1688 3828 127 61 11 chr1 144654868 144655505 -52539927 + Lx3A LINE L1 5638 6306 -703 1 1688 4662 115 13 4 chr1 144655919 144656609 -52538823 + Lx3A LINE L1 6280 6975 -6 1 1688 26 0 0 0 chr1 144656610 144656636 -52538796 + AT_rich Low_complexity Low_complexity 1 26 0 1 1688 216 0 0 0 chr1 144656710 144656734 -52538698 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1688 194 0 0 37 chr1 144656784 144656811 -52538621 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1688 2364 198 2 2 chr1 144657314 144657770 -52537662 - Lx2B LINE L1 -147 5730 5275 1 1688 5767 211 32 5 chr1 144657770 144659003 -52536429 + Lx2B LINE L1 5729 6995 -5 1 1688 207 234 0 0 chr1 144659509 144659586 -52535846 + GA-rich Low_complexity Low_complexity 4 80 0 1 1688 1152 254 157 71 chr1 144660254 144660745 -52534687 + MT2A LTR ERVL 1 533 0 1 1688 251 44 67 0 chr1 144660964 144661009 -52534423 + Lx3_Mus LINE L1 6962 7009 0 1 1688 300 186 34 0 chr1 144662179 144662238 -52533194 - HAL1-3A_ME LINE L1 -825 2033 1973 1 1688 329 296 34 29 chr1 144662828 144663003 -52532429 + L1MC LINE L1 5210 5387 -759 1 1688 3916 142 53 28 chr1 144663143 144664154 -52531278 + RLTR13D1 LTR ERVK 2 1021 -2 1 1688 4611 94 0 41 chr1 144664218 144664895 -52530537 - L1_Mus2 LINE L1 0 6566 5918 1 1688 922 99 0 0 chr1 144664898 144665029 -52530403 + L1_Mus2 LINE L1 5448 5578 -305 1 1688 5594 61 11 10 chr1 144665025 144665696 -52529736 - L1Md_F2 LINE L1 -247 6335 5665 1 1688 1847 44 0 0 chr1 144665696 144665923 -52529509 + L1Md_A LINE L1 6356 6582 0 1 1688 5594 61 11 10 chr1 144665923 144665981 -52529451 - L1_Mus2 LINE L1 -918 5664 5605 1 1688 2693 76 0 3 chr1 144665946 144666302 -52529130 + L1_Mus2 LINE L1 5594 5948 -690 1 1688 2771 81 2 30 chr1 144666829 144667226 -52528206 + L1_Mus2 LINE L1 6181 6566 0 1 1688 212 224 82 0 chr1 144667731 144667780 -52527652 - RSINE1 SINE B4 -102 63 11 1 1688 412 284 92 21 chr1 144667844 144668128 -52527304 - L1M3 LINE L1 -1473 4667 4364 2 1688 1676 327 129 22 chr1 144668262 144668418 -52527014 - Lx8 LINE L1 0 7473 7278 2 1688 291 28 0 0 chr1 144668418 144668454 -52526978 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1688 1676 327 129 22 chr1 144668454 144668505 -52526927 - Lx8 LINE L1 -196 7277 7227 2 1688 432 0 0 0 chr1 144668505 144668553 -52526879 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1688 1676 327 129 22 chr1 144668553 144668794 -52526638 - Lx8 LINE L1 -247 7226 6953 2 1688 261 0 0 0 chr1 144668794 144668823 -52526609 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1688 1676 327 129 22 chr1 144668823 144669461 -52525971 - Lx8 LINE L1 -521 6952 6269 2 1688 227 239 0 0 chr1 144669488 144669534 -52525898 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1688 1496 257 111 70 chr1 144669554 144670138 -52525294 + Lx9 LINE L1 6899 7472 -172 2 1688 384 22 0 0 chr1 144670138 144670183 -52525249 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1688 1496 257 111 70 chr1 144670183 144670300 -52525132 + Lx9 LINE L1 7473 7629 -15 2 1688 231 260 167 27 chr1 144670354 144670609 -52524823 + L1M2 LINE L1 5539 5829 -360 2 1688 367 244 6 23 chr1 144670697 144670869 -52524563 + (TA)n Simple_repeat Simple_repeat 2 170 0 2 1688 297 0 0 0 chr1 144670927 144670960 -52524472 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1688 294 29 0 0 chr1 144671642 144671677 -52523755 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1688 517 283 25 0 chr1 144672355 144672475 -52522957 + B3A SINE B2 1 123 -75 2 1688 1873 239 26 83 chr1 144672475 144673018 -52522414 - RLTR18B LTR ERVK 0 512 1 2 1688 1021 72 65 0 chr1 144674162 144674300 -52521132 - B1_Mus1 SINE Alu 0 148 2 2 1688 342 67 0 0 chr1 144674652 144674697 -52520735 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2 1688 507 132 0 0 chr1 144674979 144675070 -52520362 - L1_Mus3 LINE L1 -2 6636 6546 2 1688 310 277 28 67 chr1 144675549 144675727 -52519705 - Lx9 LINE L1 -52 7592 7422 2 1688 183 42 0 0 chr1 144675737 144675761 -52519671 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 2 1688 4819 113 12 1 chr1 144676071 144676797 -52518635 - L1_Mus3 LINE L1 -7 6631 5898 2 1688 4456 156 4 1 chr1 144676801 144677540 -52517892 + L1_Mus3 LINE L1 5105 5845 -38 2 1688 21 0 0 0 chr1 144677946 144677967 -52517465 + AT_rich Low_complexity Low_complexity 1 21 0 2 1688 23764 129 22 16 chr1 144678324 144682921 -52512511 + L1Md_F LINE L1 487 5136 -747 2 1688 5603 78 1 1 chr1 144682922 144683663 -52511769 + L1_Mus1 LINE L1 5826 6566 -1 2 1688 21 0 0 0 chr1 144683663 144683684 -52511748 + AT_rich Low_complexity Low_complexity 1 21 0 2 1688 351 0 0 0 chr1 144683866 144683905 -52511527 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1688 25 31 0 0 chr1 144683981 144684013 -52511419 + AT_rich Low_complexity Low_complexity 1 32 0 2 1688 1579 304 141 28 chr1 144686547 144686826 -52508606 + L1_Mur3 LINE L1 4215 4503 -1377 2 1688 381 22 0 0 chr1 144686826 144686872 -52508560 + (TATG)n Simple_repeat Simple_repeat 3 48 0 2 1688 1579 304 141 28 chr1 144686872 144688055 -52507377 + L1_Mur3 LINE L1 4504 5841 -39 2 1688 501 27 26 13 chr1 144688122 144688198 -52507234 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 2 1688 200 139 62 25 chr1 144688246 144688327 -52507105 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1688 23 0 0 0 chr1 144690907 144690930 -52504502 + AT_rich Low_complexity Low_complexity 1 23 0 2 1688 1075 66 0 7 chr1 144692833 144692971 -52502461 + B1_Mm SINE Alu 1 137 -10 2 1688 2476 42 0 6 chr1 144692971 144693282 -52502150 + L1Md_F2 LINE L1 6271 6579 -3 2 1688 245 182 0 0 chr1 144693772 144693827 -52501605 + T-rich Low_complexity Low_complexity 1 55 0 2 1688 417 20 0 0 chr1 144693830 144693880 -52501552 + (TTG)n Simple_repeat Simple_repeat 3 52 0 2 1688 516 59 0 0 chr1 144693880 144693948 -52501484 + (TCCTG)n Simple_repeat Simple_repeat 5 72 0 2 1688 356 271 10 0 chr1 144693949 144694045 -52501387 - B1F SINE Alu -15 134 38 2 1688 893 192 118 19 chr1 144695268 144695480 -52499952 - Lx4B LINE L1 -29 7029 6797 2 1688 438 188 6 0 chr1 144695545 144695701 -52499731 + GA-rich Low_complexity Low_complexity 1 156 0 2 1688 23 68 0 0 chr1 144696523 144696567 -52498865 + AT_rich Low_complexity Low_complexity 1 44 0 2 1688 15131 117 29 10 chr1 144696672 144700040 -52495392 - L1VL4 LINE L1 -1872 4011 582 2 1688 1748 222 52 120 chr1 144700817 144701473 -52493959 - RMER19C LTR ERVK 0 611 1 2 1688 23 97 0 0 chr1 144701523 144701595 -52493837 + AT_rich Low_complexity Low_complexity 1 72 0 2 1688 220 242 29 57 chr1 144701954 144702129 -52493303 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 2 1688 484 256 32 185 chr1 144702325 144702574 -52492858 + B3 SINE B2 4 214 -2 2 1688 206 141 0 59 chr1 144702749 144702817 -52492615 + T-rich Low_complexity Low_complexity 1 64 0 2 26 15800 130 24 13 chr1 144702839 144704394 -52491038 - L1_Mus3 LINE L1 0 6638 5113 2 1689 1135 136 11 0 chr1 144704394 144704571 -52490861 - B2_Mm1a SINE B2 -14 179 1 2 1689 15800 139 63 18 chr1 144704571 144704820 -52490612 - L1_Mus3 LINE L1 -771 5112 4877 2 1689 4914 41 18 16 chr1 144704820 144705433 -52489999 + L1Md_F2 LINE L1 5948 6561 -21 2 1689 403 90 26 0 chr1 144705433 144705511 -52489921 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 1689 15800 139 63 18 chr1 144705518 144707047 -52488385 - L1_Mus3 LINE L1 -1007 4876 3180 2 1689 369 17 17 33 chr1 144707047 144707107 -52488325 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 1689 15800 139 63 18 chr1 144707107 144707343 -52488089 - L1_Mus3 LINE L1 -2704 3179 2946 2 1689 212 86 29 0 chr1 144710134 144710169 -52485263 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1689 2286 125 8 0 chr1 144710425 144710778 -52484654 - L1_Mm LINE L1 -1092 4791 4436 2 1689 518 148 33 0 chr1 144710778 144710900 -52484532 + L1_Mus3 LINE L1 6510 6635 -3 2 1689 237 276 17 0 chr1 144711365 144711423 -52484009 + B1_Mm SINE Alu 37 95 -52 2 1689 6382 154 26 12 chr1 144712852 144714441 -52480991 - Lx LINE L1 0 6654 5040 2 1689 10195 158 7 40 chr1 144714449 144714768 -52480664 + L1_Mm LINE L1 3163 3487 -2396 2 1689 210 37 0 0 chr1 144714768 144714795 -52480637 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1689 10195 158 7 40 chr1 144714795 144716449 -52478983 + L1_Mm LINE L1 3488 5070 -813 2 1689 276 59 0 56 chr1 144717537 144717591 -52477841 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 2 1689 6262 194 9 14 chr1 144717804 144719512 -52475920 - Lx4B LINE L1 -12 6964 5250 2 1689 276 172 0 0 chr1 144719965 144720023 -52475409 + (ATG)n Simple_repeat Simple_repeat 1 58 0 2 1689 216 0 0 0 chr1 144720821 144720845 -52474587 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1689 1026 97 14 7 chr1 144720845 144720991 -52474441 - B1_Mm SINE Alu 0 147 1 2 1689 18942 136 26 1 chr1 144720992 144724865 -52470567 - L1_Mus3 LINE L1 -122 6516 2539 2 1689 375 250 57 26 chr1 144724861 144725143 -52470289 - L1_Mus3 LINE L1 -5805 852 609 2 1689 672 338 22 4 chr1 144725147 144725423 -52470009 + Lx8 LINE L1 6788 7068 -405 2 1689 3740 12 0 0 chr1 144725582 144726007 -52469425 - L1Md_A LINE L1 0 6582 6158 2 1689 4893 77 11 6 chr1 144726005 144726659 -52468773 - L1Md_F2 LINE L1 -19 6563 5907 2 1689 4803 142 33 35 chr1 144726665 144727516 -52467916 + Lx LINE L1 5804 6652 -2 2 1689 404 309 81 9 chr1 144727540 144727762 -52467670 + L1M2 LINE L1 5527 5764 -527 2 1689 472 200 12 18 chr1 144729617 144729780 -52465652 + (TA)n Simple_repeat Simple_repeat 2 163 0 2 1689 600 349 74 7 chr1 144729803 144730210 -52465222 - L1M2 LINE L1 -509 5788 5355 2 1689 725 301 183 14 chr1 144730380 144731126 -52464306 - L1_Mur3 LINE L1 -970 4907 4033 2 1689 414 362 23 19 chr1 144731875 144732089 -52463343 - B4A SINE B4 -57 235 21 2 1689 894 19 0 0 chr1 144732211 144732315 -52463117 + (GA)n Simple_repeat Simple_repeat 1 104 0 2 1689 212 333 81 57 chr1 144732349 144732473 -52462959 + B1F SINE Alu 19 145 -4 2 1689 1281 298 39 24 chr1 144732990 144733448 -52461984 + Lx6 LINE L1 6994 7458 -2 2 1689 255 170 0 0 chr1 144733852 144733899 -52461533 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1689 235 169 67 11 chr1 144733919 144734009 -52461423 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1689 291 269 20 51 chr1 144734232 144734330 -52461102 + Lx8 LINE L1 6994 7088 -385 2 1689 740 198 62 125 chr1 144734371 144734423 -52461009 + B3A SINE B2 4 47 -151 2 1689 442 101 0 0 chr1 144734423 144734492 -52460940 - L1_Mus2 LINE L1 0 6566 6498 2 1689 740 198 62 125 chr1 144734492 144734647 -52460785 + B3A SINE B2 48 198 0 2 1689 539 328 26 72 chr1 144734660 144735005 -52460427 + Lx8 LINE L1 7136 7464 -9 2 1689 26 0 0 0 chr1 144735009 144735035 -52460397 + AT_rich Low_complexity Low_complexity 1 26 0 2 1689 231 189 91 36 chr1 144735406 144735461 -52459971 + AmnSINE1 SINE SINE 510 567 -8 2 1689 421 290 55 37 chr1 144738304 144738576 -52456856 + L1MA6 LINE L1 4981 5257 -886 2 1689 929 142 17 22 chr1 144738894 144739074 -52456358 - B2_Mm2 SINE B2 -16 179 1 2 1689 1529 169 64 77 chr1 144739163 144739490 -52455942 + ORR1B1 LTR MaLR 41 363 -31 2 1689 274 309 108 51 chr1 144739764 144739921 -52455511 + L1MA6 LINE L1 5968 6133 -167 2 1689 242 295 47 19 chr1 144740051 144740158 -52455274 + L1MA6 LINE L1 6190 6299 -1 2 1689 23 68 0 0 chr1 144740335 144740379 -52455053 + AT_rich Low_complexity Low_complexity 1 44 0 2 1689 1174 206 9 0 chr1 144740603 144740826 -52454606 - URR1A DNA MER1_type 0 226 2 2 1689 1754 164 40 6 chr1 144741132 144741457 -52453975 + ORR1C2 LTR MaLR 47 382 -2 2 1689 334 298 0 0 chr1 144741826 144741910 -52453522 + B3 SINE B2 32 115 -101 2 1689 400 307 30 30 chr1 144741908 144742039 -52453393 + B3 SINE B2 81 211 -5 2 1689 35 0 0 0 chr1 144742226 144742261 -52453171 + AT_rich Low_complexity Low_complexity 1 35 0 2 1689 384 291 162 15 chr1 144742810 144742946 -52452486 + RSINE1 SINE B4 4 159 -6 2 1689 202 97 0 31 chr1 144742950 144742982 -52452450 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1689 630 0 0 0 chr1 144742982 144743052 -52452380 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 2 1689 385 246 142 50 chr1 144743386 144743527 -52451905 + RSINE1 SINE B4 12 165 0 2 1689 268 381 149 7 chr1 144743691 144743966 -52451466 + MLT1I LTR MaLR 98 411 0 2 1689 1644 32 0 0 chr1 144744283 144744472 -52450960 - B2_Mm1t SINE B2 -4 189 1 2 1689 5044 72 1 6 chr1 144744479 144745145 -52450287 - L1Md_F2 LINE L1 -12 6570 5908 2 1689 4771 64 0 2 chr1 144745145 144745754 -52449678 + L1Md_F2 LINE L1 5259 5866 -17 2 1689 21 100 0 0 chr1 144746110 144746180 -52449252 + AT_rich Low_complexity Low_complexity 1 70 0 2 1689 456 340 72 61 chr1 144746245 144746615 -52448817 - Lx8 LINE L1 -1178 6295 5919 2 1689 751 285 14 0 chr1 144746615 144746836 -52448596 - URR1B DNA MER1_type -1 224 1 3 1689 456 340 72 61 chr1 144746836 144747035 -52448397 - Lx8 LINE L1 -1555 5918 5720 2 1689 1196 57 6 0 chr1 144747151 144747308 -52448124 + B2_Mm1t SINE B2 1 158 -35 3 1689 414 0 0 0 chr1 144747308 144747354 -52448078 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 1689 353 365 79 24 chr1 144747834 144748126 -52447306 - MLT1J-int LTR MaLR -958 429 122 3 1689 599 175 17 9 chr1 144748904 144749019 -52446413 - RMER12 LTR ERVK -51 1271 1156 3 1689 289 111 0 45 chr1 144749033 144749099 -52446333 + A-rich Low_complexity Low_complexity 4 66 0 3 1689 355 253 0 40 chr1 144749198 144749297 -52446135 - RMER12 LTR ERVK -186 1136 1042 3 1689 3554 179 42 21 chr1 144749297 144750014 -52445418 - RMER12 LTR ERVK -590 732 1 3 1689 313 281 11 11 chr1 144750462 144750552 -52444880 - MTEa LTR MaLR 0 379 290 3 1689 514 370 80 12 chr1 144751049 144751375 -52444057 + MLT1A0 LTR MaLR 9 356 -9 3 1689 21 71 0 0 chr1 144752186 144752228 -52443204 + AT_rich Low_complexity Low_complexity 1 42 0 3 1689 2990 240 52 10 chr1 144752464 144753158 -52442274 + Lx5 LINE L1 6323 7045 -5 3 1689 7705 119 44 13 chr1 144753218 144754413 -52441019 - Lx3B LINE L1 -26 6947 5715 3 1689 23 0 0 0 chr1 144754649 144754672 -52440760 + AT_rich Low_complexity Low_complexity 1 23 0 3 1689 356 363 40 64 chr1 144755247 144755574 -52439858 + RLTR25B LTR ERVK 1 319 -709 3 1689 32 26 0 0 chr1 144757352 144757391 -52438041 + AT_rich Low_complexity Low_complexity 1 39 0 3 1689 269 280 0 48 chr1 144757745 144757869 -52437563 + L1M1 LINE L1 5773 5890 -413 3 1689 212 170 19 0 chr1 144757898 144757951 -52437481 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 3 1689 558 43 0 0 chr1 144757959 144758028 -52437404 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 3 1689 1014 108 36 0 chr1 144758029 144758168 -52437264 - B1_Mus1 SINE Alu -4 144 1 3 1689 852 44 0 0 chr1 144758238 144758351 -52437081 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1689 304 256 12 0 chr1 144759088 144759174 -52436258 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1689 1027 289 102 23 chr1 144759191 144759348 -52436084 - MT2A LTR ERVL -109 424 266 3 1689 2886 63 0 13 chr1 144759348 144759736 -52435696 + L1Md_F2 LINE L1 6199 6581 -1 3 1689 1027 289 102 23 chr1 144759736 144759783 -52435649 - MT2A LTR ERVL -268 265 212 3 1689 234 0 0 0 chr1 144759783 144759809 -52435623 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1689 1027 289 102 23 chr1 144759809 144759996 -52435436 - MT2A LTR ERVL -322 211 2 3 1689 835 249 133 15 chr1 144760139 144760470 -52434962 - ORR1D1 LTR MaLR -4 370 1 3 1689 372 309 0 0 chr1 144760640 144760724 -52434708 + RSINE1 SINE B4 82 165 0 3 1689 407 113 34 40 chr1 144760781 144760929 -52434503 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 3 1689 704 346 35 9 chr1 144761427 144761736 -52433696 + L3 LINE CR1 4192 4503 -5 3 1689 23 54 0 0 chr1 144762274 144762311 -52433121 + AT_rich Low_complexity Low_complexity 1 37 0 3 1689 225 196 0 56 chr1 144762435 144762489 -52432943 + A-rich Low_complexity Low_complexity 2 52 0 3 1689 26 0 0 0 chr1 144762787 144762813 -52432619 + AT_rich Low_complexity Low_complexity 1 26 0 3 1689 1814 229 63 81 chr1 144763915 144764498 -52430934 + RMER15 LTR ERVL 3 575 0 3 1689 287 348 24 42 chr1 144764501 144764666 -52430766 + RSINE1 SINE B4 4 165 0 3 1689 23 33 0 0 chr1 144766358 144766388 -52429044 + AT_rich Low_complexity Low_complexity 1 30 0 3 1689 2670 141 2 0 chr1 144766459 144766870 -52428562 + L1Md_F LINE L1 358 769 -5831 3 1689 6564 79 6 3 chr1 144766870 144767759 -52427673 + L1Md_F2 LINE L1 4695 5585 -298 3 1689 7930 51 10 0 chr1 144767760 144768745 -52426687 + L1Md_F2 LINE L1 5587 6581 -1 3 1689 3414 87 0 0 chr1 144768755 144769257 -52426175 + L1Md_F LINE L1 753 1254 -6458 3 1689 8841 23 4 0 chr1 144769248 144770281 -52425151 + L1Md_F2 LINE L1 4550 5586 -297 3 1689 8294 36 0 1 chr1 144770281 144771278 -52424154 + L1Md_A LINE L1 5587 6582 0 3 1689 31643 78 4 2 chr1 144771278 144775591 -52419841 + L1Md_F2 LINE L1 1258 5586 -297 3 1689 7294 75 3 18 chr1 144775591 144776599 -52418833 + L1Md_F2 LINE L1 5587 6579 -3 3 1689 214 186 0 0 chr1 144776629 144776672 -52418760 + A-rich Low_complexity Low_complexity 1 43 0 3 1689 636 258 21 14 chr1 144776738 144776907 -52418525 - Lx7 LINE L1 -453 7020 6850 3 1689 1154 115 63 0 chr1 144776915 144777089 -52418343 + B2_Mm2 SINE B2 1 185 -10 3 1689 505 150 16 29 chr1 144777098 144777209 -52418223 + B2_Mm2 SINE B2 1 107 -86 3 1689 17486 152 28 2 chr1 144777260 144780400 -52415032 - L1_Mm LINE L1 -1172 4711 1492 3 1689 2397 102 3 16 chr1 144780401 144780770 -52414662 - L1Md_F2 LINE L1 -2 6580 6217 3 1689 2529 88 0 11 chr1 144780770 144781126 -52414306 + L1_Mm LINE L1 4701 5052 -831 3 1689 5207 142 17 10 chr1 144781121 144782200 -52413232 - L1VL2 LINE L1 -2428 1270 34 3 1689 22 88 0 0 chr1 144782639 144782696 -52412736 + AT_rich Low_complexity Low_complexity 1 57 0 3 1689 266 320 57 22 chr1 144783798 144783983 -52411449 - RMER15 LTR ERVL -16 559 340 3 1689 22 80 0 0 chr1 144784900 144784950 -52410482 + AT_rich Low_complexity Low_complexity 1 50 0 3 1689 21 36 0 0 chr1 144786594 144786622 -52408810 + AT_rich Low_complexity Low_complexity 1 28 0 3 1689 575 313 22 16 chr1 144788611 144788793 -52406639 + MIR SINE MIR 63 245 -17 3 1689 483 130 0 65 chr1 144788887 144788903 -52406529 - Lx3A LINE L1 -2 6979 6967 3 1689 216 0 0 0 chr1 144788903 144788927 -52406505 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1689 483 130 0 65 chr1 144788927 144789017 -52406415 - Lx3A LINE L1 -15 6966 6880 3 1689 23 0 0 0 chr1 144789047 144789070 -52406362 + AT_rich Low_complexity Low_complexity 1 23 0 3 1689 626 355 95 0 chr1 144791195 144791544 -52403888 + MLT1A1 LTR MaLR 1 382 -26 3 1689 213 356 131 35 chr1 144792381 144792579 -52402853 - L2 LINE L2 -1783 1636 1420 3 1689 693 333 20 82 chr1 144794811 144795115 -52400317 + B4A SINE B4 1 285 -7 3 1689 411 98 0 0 chr1 144795119 144795180 -52400252 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1689 35 83 0 0 chr1 144795199 144795283 -52400149 + AT_rich Low_complexity Low_complexity 1 84 0 3 1689 4193 65 43 24 chr1 144797235 144797821 -52397611 + L1Md_F2 LINE L1 5974 6570 -12 3 1689 2791 251 34 70 chr1 144797960 144798908 -52396524 - Lx7 LINE L1 -202 7494 6581 3 1689 414 0 0 0 chr1 144799877 144799923 -52395509 + (TAG)n Simple_repeat Simple_repeat 2 47 0 3 1689 3187 90 0 5 chr1 144800869 144801305 -52394127 + L1_Mus4 LINE L1 6197 6630 -6 3 1689 634 308 70 5 chr1 144802047 144802233 -52393199 - B3A SINE B2 0 198 1 3 1689 3655 271 98 25 chr1 144802742 144802872 -52392560 + Lx9 LINE L1 6177 6348 -1296 3 1689 228 35 0 0 chr1 144802872 144802901 -52392531 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1689 3655 271 98 25 chr1 144802901 144804120 -52391312 + Lx9 LINE L1 6349 7624 -20 3 1689 844 37 0 18 chr1 144804648 144804759 -52390673 - B1_Mus2 SINE Alu -1 146 38 3 1689 23 33 0 0 chr1 144805362 144805392 -52390040 + AT_rich Low_complexity Low_complexity 1 30 0 3 1689 183 129 0 0 chr1 144806844 144806875 -52388557 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1689 763 269 112 32 chr1 144807251 144807528 -52387904 - RMER15 LTR ERVL -3 572 274 3 1689 317 153 0 14 chr1 144807660 144807733 -52387699 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1689 251 318 153 0 chr1 144807925 144808010 -52387422 + B4A SINE B4 3 100 -192 3 1689 490 261 9 0 chr1 144808036 144808147 -52387285 + B4A SINE B4 181 292 0 3 1689 218 235 20 0 chr1 144808148 144808199 -52387233 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 3 1689 22 0 0 0 chr1 144808269 144808291 -52387141 + AT_rich Low_complexity Low_complexity 1 22 0 3 1689 421 354 34 0 chr1 144808309 144808456 -52386976 - RSINE1 SINE B4 -9 156 5 3 1689 550 191 8 8 chr1 144809424 144809551 -52385881 + GA-rich Low_complexity Low_complexity 3 129 0 3 1689 233 256 0 0 chr1 144811176 144811219 -52384213 - LTR16B LTR ERVL -4 459 417 3 1689 362 241 61 61 chr1 144811240 144811355 -52384077 - MLT1D LTR MaLR -11 494 380 3 1689 205 333 0 49 chr1 144811487 144811610 -52383822 + CT-rich Low_complexity Low_complexity 1 117 0 3 1689 283 299 188 40 chr1 144811904 144812106 -52383326 - MLT1D LTR MaLR -269 236 5 3 1689 363 23 0 0 chr1 144812711 144812755 -52382677 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1689 258 338 21 29 chr1 144812917 144813057 -52382375 + B1F1 SINE Alu 1 139 -10 3 1689 624 27 0 0 chr1 144813059 144813133 -52382299 + (GAA)n Simple_repeat Simple_repeat 2 75 0 3 1689 360 0 0 0 chr1 144813205 144813245 -52382187 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1689 22 0 0 0 chr1 144813373 144813395 -52382037 + AT_rich Low_complexity Low_complexity 1 22 0 3 1689 189 0 0 0 chr1 144814894 144814915 -52380517 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1689 621 134 50 0 chr1 144815498 144815617 -52379815 + L1_Mus4 LINE L1 6509 6633 -3 3 1689 410 91 0 0 chr1 144815987 144816042 -52379390 + MTA_Mm LTR MaLR 346 400 0 3 1689 8090 66 30 0 chr1 144816042 144817108 -52378324 + MTA_Mm-int LTR MaLR 1 1098 0 3 1689 1255 74 6 6 chr1 144817110 144817287 -52378145 + MTA_Mm LTR MaLR 3 179 -217 3 1689 865 30 0 0 chr1 144817287 144817388 -52378044 + L1Md_F2 LINE L1 4920 5020 -863 3 1689 1989 26 0 0 chr1 144817385 144817614 -52377818 + L1Md_F2 LINE L1 5358 5586 -297 3 1689 7944 47 2 2 chr1 144817614 144818629 -52376803 + L1Md_F2 LINE L1 5587 6582 0 3 1689 1462 70 85 0 chr1 144818629 144818830 -52376602 + MTA_Mm LTR MaLR 179 396 0 3 1689 29 70 0 0 chr1 144818877 144818934 -52376498 + AT_rich Low_complexity Low_complexity 1 57 0 3 1689 27 92 0 0 chr1 144819048 144819124 -52376308 + AT_rich Low_complexity Low_complexity 1 76 0 3 1689 2773 87 10 5 chr1 144819846 144820240 -52375192 + MTA_Mm LTR MaLR 1 396 0 3 1689 1390 26 78 5 chr1 144820652 144820844 -52374588 - L1Md_F2 LINE L1 -1 6581 6376 3 1689 544 318 111 4 chr1 144821214 144821457 -52373975 - L4 LINE RTE -1456 573 305 3 1689 451 353 29 32 chr1 144822254 144822500 -52372932 + L1ME1 LINE L1 5785 6029 -150 3 1689 938 157 36 0 chr1 144822954 144823120 -52372312 + URR1A DNA MER1_type 49 220 -6 3 1689 388 227 45 32 chr1 144823207 144823362 -52372070 + Lx9 LINE L1 7463 7619 -25 3 1689 1438 305 105 59 chr1 144823806 144825865 -52369567 + L1M3 LINE L1 2602 4754 -1386 3 1689 25 31 0 0 chr1 144829628 144829660 -52365772 + AT_rich Low_complexity Low_complexity 1 32 0 3 1689 281 0 0 71 chr1 144829993 144830035 -52365397 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1689 229 330 52 0 chr1 144830325 144830440 -52364992 - MamRep605 Unknown Unknown -300 576 456 3 1689 414 275 58 106 chr1 144830456 144830675 -52364757 + B3A SINE B2 3 216 0 3 1689 205 269 133 44 chr1 144831498 144831611 -52363821 + MIR3 SINE MIR 38 160 -48 4 1689 319 339 23 68 chr1 144831828 144831961 -52363471 + RMER10B LTR ERVL 272 398 0 4 1689 21 0 0 0 chr1 144832095 144832116 -52363316 + AT_rich Low_complexity Low_complexity 1 21 0 4 1689 378 302 30 38 chr1 144832211 144832342 -52363090 - RSINE1 SINE B4 -24 141 12 4 1689 369 317 118 26 chr1 144832720 144833060 -52362372 + L1ME1 LINE L1 4934 5304 -842 4 1689 358 263 76 34 chr1 144833254 144833384 -52362048 + L1ME1 LINE L1 5717 5852 -327 4 1689 656 188 250 0 chr1 144833384 144833560 -52361872 - URR1B DNA MER1_type -1 224 5 4 1689 358 330 129 27 chr1 144833560 144833781 -52361651 + L1ME1 LINE L1 5853 6098 -81 4 1690 187 189 32 43 chr1 144835222 144835316 -52360116 + GA-rich Low_complexity Low_complexity 5 97 0 4 1690 27 0 0 0 chr1 144835731 144835758 -52359674 + AT_rich Low_complexity Low_complexity 1 27 0 4 1690 7539 133 17 4 chr1 144836554 144838646 -52356786 + Lx LINE L1 4529 6647 -7 4 1690 285 364 78 17 chr1 144838671 144838850 -52356582 - B3A SINE B2 -2 196 7 4 1690 278 268 0 0 chr1 144838930 144839001 -52356431 + L1M2 LINE L1 4405 4475 -1668 4 1690 699 282 65 67 chr1 144839044 144839447 -52355985 + L1M2 LINE L1 4612 5013 -1130 4 1690 1022 115 6 0 chr1 144839794 144839959 -52355473 + (GAAAA)n Simple_repeat Simple_repeat 4 169 0 4 1690 713 22 0 11 chr1 144839961 144840053 -52355379 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 4 1690 189 0 0 0 chr1 144840051 144840072 -52355360 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1690 495 87 0 0 chr1 144840861 144840930 -52354502 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1690 608 70 12 0 chr1 144840930 144841015 -52354417 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1690 428 305 66 0 chr1 144841285 144841498 -52353934 + L1M2 LINE L1 5254 5480 -817 4 1690 819 70 0 0 chr1 144841510 144841625 -52353807 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 1690 5551 42 3 0 chr1 144841917 144842588 -52352844 - L1Md_F2 LINE L1 -2 6580 5908 4 1690 5162 37 0 0 chr1 144842588 144843423 -52352009 + L1Md_F2 LINE L1 5259 6093 -489 4 1690 323 127 0 16 chr1 144843490 144843554 -52351878 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1690 25 0 0 0 chr1 144843809 144843834 -52351598 + AT_rich Low_complexity Low_complexity 1 25 0 4 1690 6214 93 66 5 chr1 144844563 144845481 -52349951 - L1_Mus4 LINE L1 -1 6635 5662 4 1690 848 200 5 21 chr1 144846326 144846520 -52348912 - B2_Mm2 SINE B2 -4 191 1 4 1690 23 86 0 0 chr1 144846778 144846836 -52348596 + AT_rich Low_complexity Low_complexity 1 58 0 4 1690 278 369 86 45 chr1 144847263 144847530 -52347902 + MLT1I LTR MaLR 98 375 -36 4 1690 403 276 57 8 chr1 144847884 144848008 -52347424 + B1F SINE Alu 12 141 -8 4 1690 570 86 0 0 chr1 144848024 144848105 -52347327 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 4 1690 243 103 0 25 chr1 144848105 144848145 -52347287 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 4 1690 24 0 0 0 chr1 144848460 144848484 -52346948 + AT_rich Low_complexity Low_complexity 1 24 0 4 1690 1947 159 19 14 chr1 144849769 144850132 -52345300 + Lx2B LINE L1 6636 7000 0 4 1690 799 163 122 0 chr1 144850904 144851027 -52344405 + B2_Mm2 SINE B2 1 131 -64 4 1690 2907 80 7 2 chr1 144851027 144851430 -52344002 - L1_Mus3 LINE L1 -1 6637 6233 4 1690 799 163 122 0 chr1 144851430 144851478 -52343954 + B2_Mm2 SINE B2 132 192 -3 4 1690 1143 82 0 0 chr1 144851493 144851639 -52343793 + B1_Mus2 SINE Alu 2 147 0 4 1690 192 48 23 45 chr1 144851643 144851687 -52343745 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1690 1031 94 0 0 chr1 144852318 144852456 -52342976 + B1_Mus2 SINE Alu 1 138 -9 4 1690 207 0 0 0 chr1 144852456 144852479 -52342953 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1690 378 280 55 27 chr1 144853074 144853184 -52342248 + B4A SINE B4 2 114 -178 4 1690 301 326 12 0 chr1 144853234 144853320 -52342112 + RSINE1 SINE B4 79 165 0 4 1690 274 74 37 0 chr1 144854219 144854273 -52341159 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 4 1690 19407 158 95 19 chr1 144854473 144859993 -52335439 - L1_Mus2 LINE L1 -3 6563 608 4 1690 393 270 43 14 chr1 144859979 144860118 -52335314 - L1VL2 LINE L1 -6137 198 56 4 1690 3077 24 51 0 chr1 144860155 144860526 -52334906 + RLTR10 LTR ERVK 1 390 0 4 1690 314 221 74 0 chr1 144860528 144860623 -52334809 + Lx9 LINE L1 7542 7643 -1 4 1690 1147 155 25 68 chr1 144861133 144861368 -52334064 + URR1B DNA MER1_type 1 225 0 4 1690 216 184 0 0 chr1 144861452 144861501 -52333931 + T-rich Low_complexity Low_complexity 1 49 0 4 1690 249 33 0 0 chr1 144861908 144861938 -52333494 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1690 448 266 91 23 chr1 144861948 144862167 -52333265 - L1MA6 LINE L1 -60 6240 6007 4 1690 860 359 52 77 chr1 144863733 144864228 -52331204 + MLT2B2 LTR ERVL 29 511 -4 4 1690 3489 23 0 0 chr1 144864512 144864908 -52330524 + MTA_Mm LTR MaLR 1 396 0 4 1690 877 52 0 0 chr1 144864924 144865039 -52330393 - B1_Mm SINE Alu 0 147 33 4 1690 414 233 49 118 chr1 144864927 144865073 -52330359 - B4 SINE B4 -68 224 88 4 1690 244 293 0 17 chr1 144865140 144865199 -52330233 + RSINE1 SINE B4 24 81 -84 4 1690 818 276 124 45 chr1 144865910 144866240 -52329192 + MTEa LTR MaLR 1 356 -23 4 1690 682 335 122 4 chr1 144866276 144866531 -52328901 + B4A SINE B4 2 286 -6 4 1690 213 65 0 0 chr1 144866593 144866624 -52328808 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1690 270 338 90 23 chr1 144868061 144868194 -52327238 - MER5A DNA MER1_type 0 189 48 4 1690 241 250 0 0 chr1 144868325 144868377 -52327055 + GA-rich Low_complexity Low_complexity 1 52 0 4 1690 238 400 87 0 chr1 144868531 144868646 -52326786 - MIR SINE MIR -67 141 17 4 1690 261 327 78 7 chr1 144868650 144868804 -52326628 + MER5A1 DNA MER1_type 1 165 -1 4 1690 459 0 0 0 chr1 144868837 144868888 -52326544 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1690 241 125 36 0 chr1 144869876 144869932 -52325500 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1690 21 36 0 0 chr1 144869937 144869965 -52325467 + AT_rich Low_complexity Low_complexity 1 28 0 4 1690 202 283 117 0 chr1 144871291 144871351 -52324081 + MIR SINE MIR 32 98 -164 4 1690 488 176 19 0 chr1 144871356 144871464 -52323968 + Lx4A LINE L1 6949 7058 0 4 1690 278 263 92 8 chr1 144872120 144872239 -52323193 + L1MA9 LINE L1 6000 6128 -184 4 1690 841 268 24 0 chr1 144872240 144872445 -52322987 + B3 SINE B2 1 210 -6 4 1690 2468 154 107 135 chr1 144872457 144872915 -52322517 - Lx2B LINE L1 0 7000 6499 4 1690 970 98 0 53 chr1 144872915 144873066 -52322366 + B1_Mus1 SINE Alu 5 147 -1 4 1690 2468 154 107 135 chr1 144873066 144873252 -52322180 - Lx2B LINE L1 -502 6498 6374 4 1690 878 281 38 74 chr1 144873301 144873710 -52321722 + MTE2b LTR MaLR 1 377 -2 4 1690 239 287 56 0 chr1 144873737 144873845 -52321587 + L1MA9 LINE L1 6185 6298 -36 4 1690 1061 75 0 0 chr1 144873945 144874079 -52321353 + B1_Mm SINE Alu 1 134 -13 4 1690 279 0 0 0 chr1 144874129 144874160 -52321272 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1690 225 0 0 0 chr1 144874464 144874489 -52320943 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1690 234 125 53 18 chr1 144875403 144875460 -52319972 + A-rich Low_complexity Low_complexity 1 59 0 4 1690 1156 49 7 0 chr1 144875515 144875659 -52319773 + B1_Mus1 SINE Alu 4 148 0 4 1690 254 98 0 19 chr1 144875661 144875713 -52319719 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1690 21 71 0 0 chr1 144875856 144875898 -52319534 + AT_rich Low_complexity Low_complexity 1 42 0 4 1690 8362 29 0 1 chr1 144875898 144877174 -52318258 - L1Md_T LINE L1 0 6582 5309 4 1690 5193 60 0 9 chr1 144877581 144878253 -52317179 - L1Md_F2 LINE L1 -23 6559 5894 4 1690 324 0 0 0 chr1 144878278 144878314 -52317118 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1690 252 302 0 16 chr1 144882270 144882334 -52313098 + L1M2c LINE L1 325 387 -6402 4 1690 309 340 0 0 chr1 144883243 144883337 -52312095 + MTE2b LTR MaLR 3 96 -283 4 1690 726 327 85 8 chr1 144883320 144883622 -52311810 + MTE2b LTR MaLR 41 363 -16 4 1690 1099 160 33 5 chr1 144883991 144884205 -52311227 + Lx3A LINE L1 6757 6976 -5 4 1690 641 305 106 22 chr1 144884376 144885139 -52310293 + L1M2c LINE L1 2787 3613 -3172 4 1690 539 292 98 16 chr1 144885359 144885751 -52309681 + L1_Rod LINE L1 2963 3390 -2490 4 1690 3346 38 2 0 chr1 144885751 144886146 -52309286 - MTA_Mm LTR MaLR 0 396 1 4 1690 473 304 94 26 chr1 144886146 144886225 -52309207 + L1_Rod LINE L1 3391 3463 -2417 4 1690 1194 316 49 16 chr1 144886231 144886898 -52308534 + L1_Mur3 LINE L1 17 700 -7028 4 1690 1201 242 33 27 chr1 144886891 144887306 -52308126 + L1_Mur3 LINE L1 859 1213 -6515 4 1690 414 0 0 0 chr1 144887306 144887352 -52308080 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1690 3659 201 34 85 chr1 144887352 144888083 -52307349 + L1_Mur3 LINE L1 1096 1817 -4063 4 1690 357 169 20 31 chr1 144888083 144888181 -52307251 + GA-rich Low_complexity Low_complexity 2 98 0 4 1690 3659 201 34 85 chr1 144888181 144888417 -52307015 + L1_Mur3 LINE L1 1818 2052 -3828 4 1690 312 27 0 0 chr1 144888417 144888454 -52306978 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1690 330 26 0 0 chr1 144888454 144888492 -52306940 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1690 3659 219 28 173 chr1 144888492 144889258 -52306174 + L1_Mur3 LINE L1 2048 2741 -3136 4 1690 2763 101 141 24 chr1 144889262 144889758 -52305674 + L1_Mus3 LINE L1 5842 6395 -243 4 1690 806 123 36 24 chr1 144889997 144890163 -52305269 + Lx6 LINE L1 5782 5949 -1511 4 1690 974 280 51 77 chr1 144890167 144890418 -52305014 - Lx6 LINE L1 -1098 6362 6102 4 1690 659 32 0 21 chr1 144890418 144890513 -52304919 - L1_Mus2 LINE L1 0 6566 6474 4 1690 974 280 51 77 chr1 144890513 144890652 -52304780 - Lx6 LINE L1 -1359 6101 5982 4 1690 1412 221 56 9 chr1 144890683 144891003 -52304429 + Lx6 LINE L1 7118 7452 -8 4 1690 462 268 0 0 chr1 144892077 144892174 -52303258 - RSINE1 SINE B4 0 165 69 4 1690 388 307 196 64 chr1 144892314 144892707 -52302725 + L1M2 LINE L1 4457 4901 -1242 4 1690 295 304 35 17 chr1 144892785 144892959 -52302473 + L1M2 LINE L1 5129 5305 -838 4 1690 7757 187 145 39 chr1 144893292 144894999 -52300433 + L1_Mur2 LINE L1 889 3037 -2843 4 1690 1000 133 0 11 chr1 144894999 144895181 -52300251 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1690 7757 189 192 48 chr1 144895181 144896294 -52299138 + L1_Mur2 LINE L1 3038 4070 -1810 4 1690 3998 207 57 31 chr1 144896288 144897162 -52298270 + Lx5 LINE L1 6153 7049 -1 4 1690 275 298 91 0 chr1 144897172 144897293 -52298139 + L1M2 LINE L1 5325 5456 -715 4 1690 1057 329 51 21 chr1 144897426 144897858 -52297574 - Lx8 LINE L1 -414 7059 6615 4 1690 425 312 37 94 chr1 144897861 144898052 -52297380 + Lx8 LINE L1 7070 7249 -224 4 1690 210 192 0 0 chr1 144900642 144900694 -52294738 + (CAT)n Simple_repeat Simple_repeat 2 53 0 5 1690 243 345 40 20 chr1 144901546 144901694 -52293738 - MLT2B4 LTR ERVL -182 374 224 5 1690 1300 241 27 3 chr1 144901695 144901987 -52293445 + ORR1D1 LTR MaLR 73 371 -3 5 1690 314 264 92 46 chr1 144901991 144902071 -52293361 - MLT2B4 LTR ERVL -419 137 51 5 1690 2962 61 15 2 chr1 144902071 144902466 -52292966 + MTB LTR MaLR 1 400 0 5 1690 314 264 92 46 chr1 144902466 144902516 -52292916 - MLT2B4 LTR ERVL -506 50 1 5 1690 281 281 177 14 chr1 144902532 144902562 -52292870 - MER110 LTR ERV1 -325 166 136 5 1690 1317 233 60 99 chr1 144902562 144902996 -52292436 - MTD LTR MaLR 0 419 3 5 1690 281 281 177 14 chr1 144902996 144903106 -52292326 - MER110 LTR ERV1 -356 135 4 5 1690 564 277 102 12 chr1 144904599 144904855 -52290577 - L1MA9 LINE L1 -36 6276 5998 5 1690 574 328 74 21 chr1 144904882 144905274 -52290158 - L1MA9 LINE L1 -393 5919 5506 5 1690 615 223 129 18 chr1 144905844 144906188 -52289244 + Lx9 LINE L1 7262 7643 -1 5 1690 1031 238 137 21 chr1 144906404 144906739 -52288693 - ORR1D1 LTR MaLR 0 374 1 5 1690 520 206 23 15 chr1 144906852 144906985 -52288447 - Lx7 LINE L1 0 7696 7563 5 1690 1456 289 65 18 chr1 144907564 144908322 -52287110 + Lx7 LINE L1 5105 5917 -1779 5 1690 7270 52 8 4 chr1 144908330 144909244 -52286188 - L1Md_F2 LINE L1 -12 6570 5654 5 1690 3090 57 0 3 chr1 144909247 144909636 -52285796 + L1Md_F2 LINE L1 5257 5644 -239 5 1690 663 279 53 0 chr1 144909824 144910014 -52285418 + Lx7 LINE L1 6857 7056 -417 5 1690 2174 52 0 0 chr1 144910296 144910566 -52284866 - L1Md_T LINE L1 0 6582 6313 5 1690 7059 20 0 1 chr1 144910566 144911625 -52283807 + L1Md_T LINE L1 5073 6130 -452 5 1690 639 329 0 0 chr1 144911967 144912128 -52283304 + RSINE1 SINE B4 5 165 0 5 1690 2853 284 87 29 chr1 144913221 144914460 -52280972 + RMER1C Other Other 42 1342 0 5 1690 22 35 0 0 chr1 144914752 144914781 -52280651 + AT_rich Low_complexity Low_complexity 1 29 0 5 1690 24 0 0 0 chr1 144915687 144915711 -52279721 + AT_rich Low_complexity Low_complexity 1 24 0 5 1690 1984 137 3 70 chr1 144917090 144917435 -52277997 - ORR1A2 LTR MaLR -5 322 1 5 1690 40451 16 2 6 chr1 144917717 144923924 -52271508 - L1Md_A LINE L1 -1 6581 406 5 1690 312 233 13 32 chr1 144924181 144924261 -52271171 + GA-rich Low_complexity Low_complexity 1 77 0 5 1690 1013 111 0 27 chr1 144924261 144924446 -52270986 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1690 312 233 13 32 chr1 144924446 144924520 -52270912 + GA-rich Low_complexity Low_complexity 78 152 0 5 1690 532 260 92 20 chr1 144925159 144925366 -52270066 + Lx3C LINE L1 6696 6929 -79 5 1690 692 80 0 10 chr1 144925366 144925467 -52269965 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 5 1690 345 301 81 38 chr1 144925501 144925736 -52269696 + MLT1C LTR MaLR 192 436 -31 5 1690 23 54 0 0 chr1 144926167 144926204 -52269228 + AT_rich Low_complexity Low_complexity 1 37 0 5 1690 278 361 14 30 chr1 144927490 144927653 -52267779 - L2c LINE L2 -166 3209 3055 5 1690 242 264 98 11 chr1 144927656 144927748 -52267684 + MIRc SINE MIR 136 235 -33 5 1690 433 267 240 9 chr1 144927779 144928108 -52267324 + MLT1A1 LTR MaLR 4 408 0 5 1690 350 288 18 9 chr1 144929139 144929251 -52266181 - MLT1A1 LTR MaLR 0 408 296 5 1690 273 343 20 20 chr1 144929349 144929450 -52265982 - MLT1A1 LTR MaLR -270 138 38 5 1690 306 0 0 0 chr1 144929579 144929613 -52265819 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1690 8518 21 0 0 chr1 144929657 144931180 -52264252 - L1Md_T LINE L1 0 6582 5060 5 1690 1014 123 0 0 chr1 144931177 144931340 -52264092 + L1Md_Gf LINE L1 105 267 -6255 5 1690 180 298 104 21 chr1 144931456 144931552 -52263880 - MIR SINE MIR -143 119 16 5 1690 6972 5 4 0 chr1 144933697 144934474 -52260958 - L1Md_T LINE L1 0 6582 5803 5 1690 4290 16 0 4 chr1 144934474 144934961 -52260471 + L1Md_T LINE L1 5334 5820 -63 5 1690 414 343 51 29 chr1 144935555 144935831 -52259601 + LTR80A LTR ERVL 1 282 -301 5 1690 340 352 89 96 chr1 144936611 144937048 -52258384 - LTR40b LTR ERVL -1 461 28 5 1690 621 221 146 9 chr1 144937374 144937607 -52257825 - Lx9 LINE L1 -10 7634 7370 5 1690 881 233 36 83 chr1 144939584 144939921 -52255511 - Lx7 LINE L1 -4 7692 7372 5 1690 544 246 29 15 chr1 144940041 144940177 -52255255 + B1_Mur1 SINE Alu 11 148 -1 5 1690 404 305 73 44 chr1 144941170 144941307 -52254125 + RSINE1 SINE B4 3 143 -22 5 1690 867 90 0 0 chr1 144941311 144941433 -52253999 + (TCTCCC)n Simple_repeat Simple_repeat 5 126 0 5 1690 360 0 0 0 chr1 144941435 144941475 -52253957 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1690 467 220 67 17 chr1 144942632 144942752 -52252680 + B1_Mur1 SINE Alu 6 131 -18 5 1690 920 116 77 1 chr1 144942791 144942954 -52252478 - B2_Mm2 SINE B2 -10 185 14 5 1690 212 335 207 6 chr1 144942965 144943289 -52252143 - L2 LINE L2 -687 2732 2344 5 1690 22 35 0 0 chr1 144943374 144943403 -52252029 + AT_rich Low_complexity Low_complexity 1 29 0 5 1690 287 336 7 40 chr1 144944819 144944968 -52250464 - MamGypLTR2b LTR Gypsy -6 916 773 5 1690 387 0 0 0 chr1 144945169 144945212 -52250220 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1690 200 295 127 45 chr1 144945949 144946059 -52249373 - MIRm SINE MIR 0 276 158 5 1690 197 359 13 0 chr1 144946468 144946546 -52248886 + MIRb SINE MIR 176 254 -14 5 1690 937 122 60 60 chr1 144947192 144947375 -52248057 - B2_Mm2 SINE B2 -8 187 5 5 1690 200 59 0 29 chr1 144947393 144947428 -52248004 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1690 245 29 29 0 chr1 144948164 144948198 -52247234 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1690 582 253 134 41 chr1 144948519 144948713 -52246719 + MTE2b LTR MaLR 1 212 -167 5 1690 665 304 12 0 chr1 144949294 144949455 -52245977 + RSINE1 SINE B4 3 165 0 5 1690 313 309 141 24 chr1 144950269 144950524 -52244908 + MLT1J1 LTR MaLR 5 289 -155 5 1690 265 47 47 0 chr1 144950598 144950641 -52244791 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 1690 293 29 0 0 chr1 144951631 144951666 -52243766 - B2_Mm2 SINE B2 -104 91 57 5 1690 216 349 81 0 chr1 144951948 144952034 -52243398 + RSINE1 SINE B4 69 161 -4 5 1690 21 36 0 0 chr1 144952458 144952486 -52242946 + AT_rich Low_complexity Low_complexity 1 28 0 5 1690 1363 83 16 0 chr1 144952578 144952770 -52242662 - B2_Mm2 SINE B2 0 195 1 5 1690 3941 125 20 139 chr1 144953547 144954466 -52240966 - RMER17D2 LTR ERVK 0 809 1 5 1690 610 240 32 69 chr1 144955143 144955331 -52240101 - Lx9 LINE L1 -446 7198 7018 5 1690 1060 182 43 47 chr1 144955327 144955603 -52239829 + Lx9 LINE L1 7370 7644 0 5 1690 244 330 62 65 chr1 144957248 144957569 -52237863 - L1ME3A LINE L1 -9 6164 5845 5 1690 253 196 0 67 chr1 144957835 144957895 -52237537 - L1ME3A LINE L1 -804 5436 5381 5 1690 233 184 0 0 chr1 144957943 144957981 -52237451 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 5 1690 787 257 38 24 chr1 144958085 144958296 -52237136 + B3 SINE B2 1 214 -2 5 1690 849 305 174 0 chr1 144958616 144958937 -52236495 - Lx8 LINE L1 -667 6806 6430 5 1690 5875 144 93 19 chr1 144959183 144960307 -52235125 - Lx LINE L1 -4 6650 5476 5 1690 1143 82 0 0 chr1 144960402 144960549 -52234883 + B1_Mus2 SINE Alu 1 147 0 5 1690 243 0 0 0 chr1 144960563 144960590 -52234842 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1690 324 247 112 38 chr1 144960590 144960750 -52234682 - L1ME3A LINE L1 -1812 4334 4163 5 1690 482 284 101 0 chr1 144961867 144962015 -52233417 + RSINE1 SINE B4 3 165 0 5 1690 273 57 0 0 chr1 144962042 144962077 -52233355 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 1690 23 68 0 0 chr1 144962412 144962456 -52232976 + AT_rich Low_complexity Low_complexity 1 44 0 5 1690 806 224 70 188 chr1 144962640 144962963 -52232469 + ORR1C2 LTR MaLR 56 336 -48 5 1690 345 24 0 0 chr1 144962963 144963005 -52232427 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1690 806 224 70 188 chr1 144963005 144963054 -52232378 + ORR1C2 LTR MaLR 337 384 0 5 1690 31 0 0 0 chr1 144963106 144963137 -52232295 + AT_rich Low_complexity Low_complexity 1 31 0 5 1690 218 205 0 0 chr1 144963965 144964004 -52231428 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 5 1690 304 182 0 0 chr1 144964172 144964227 -52231205 - B2_Mm2 SINE B2 -94 101 47 5 1690 932 72 8 0 chr1 144964307 144964432 -52231000 - B2_Mm1t SINE B2 -14 179 54 5 1690 204 135 0 0 chr1 144964432 144964469 -52230963 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1690 321 316 26 36 chr1 144964868 144965062 -52230370 + L5 LINE RTE 733 924 -1341 5 1691 24 32 0 0 chr1 144966361 144966392 -52229040 + AT_rich Low_complexity Low_complexity 1 31 0 5 1691 510 17 0 0 chr1 144966569 144966628 -52228804 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1691 1572 112 0 0 chr1 144967409 144967651 -52227781 - Lx2A1 LINE L1 0 7008 6767 5 1691 443 220 36 18 chr1 144968682 144968793 -52226639 + MER94 DNA AcHobo 21 133 -1 5 1691 1242 226 137 12 chr1 144968893 144969366 -52226066 - RMER5 LTR ERV1 0 534 3 5 1691 213 287 42 21 chr1 144969768 144969864 -52225568 + RSINE1 SINE B4 3 100 -65 5 1691 845 110 72 22 chr1 144969865 144970004 -52225428 + B1_Mus2 SINE Alu 2 147 0 5 1691 624 50 0 0 chr1 144970133 144970213 -52225219 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1691 359 73 0 18 chr1 144970257 144970313 -52225119 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1691 297 0 0 0 chr1 144971631 144971664 -52223768 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1691 322 344 77 5 chr1 144971709 144971931 -52223501 + L1M2 LINE L1 5524 5761 -536 5 1691 494 323 6 47 chr1 144972885 144973054 -52222378 + RSINE1 SINE B4 4 165 0 5 1691 457 276 61 25 chr1 144973104 144973301 -52222131 - L1M5 LINE L1 -376 5788 5585 5 1691 390 21 0 0 chr1 144973817 144973864 -52221568 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1691 477 265 22 43 chr1 144974014 144974152 -52221280 + RSINE1 SINE B4 31 165 0 5 1691 267 186 26 32 chr1 144974152 144974308 -52221124 + (CA)n Simple_repeat Simple_repeat 1 155 0 5 1691 468 114 15 121 chr1 144974321 144974520 -52220912 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1691 456 19 0 0 chr1 144975509 144975562 -52219870 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1691 3993 118 15 81 chr1 144975688 144976508 -52218924 + RMER17A LTR ERVK 1 751 0 6 1691 482 324 22 0 chr1 144976508 144976634 -52218798 + MLT1A0 LTR MaLR 237 365 0 6 1691 830 236 23 91 chr1 144976982 144977247 -52218185 + RLTR14 LTR ERV1 3 249 -133 6 1691 2653 85 45 5 chr1 144977535 144977912 -52217520 - MTA_Mm LTR MaLR -4 392 1 6 1691 351 268 48 61 chr1 144978095 144978163 -52217269 - Lx9 LINE L1 -749 6895 6831 6 1691 2899 21 24 3 chr1 144978163 144978502 -52216930 + ORR1A0 LTR MaLR 1 346 0 6 1691 351 268 48 61 chr1 144978502 144978580 -52216852 - Lx9 LINE L1 -814 6830 6751 6 1691 18274 195 40 32 chr1 144978775 144982608 -52212824 + L1_Mur3 LINE L1 375 4255 -1625 6 1691 2711 124 7 14 chr1 144982608 144983042 -52212390 + Lx2 LINE L1 6567 6997 0 6 1691 18274 188 33 33 chr1 144983042 144984386 -52211046 + L1_Mur3 LINE L1 4256 5580 -300 6 1691 8190 32 6 0 chr1 144984387 144985361 -52210071 + L1Md_F2 LINE L1 5588 6567 -15 6 1691 733 171 95 0 chr1 144985368 144985526 -52209906 + L1_Mur3 LINE L1 4421 4593 -1287 6 1691 270 303 57 19 chr1 144987149 144987224 -52208208 + L1MCa LINE L1 1 79 -6429 6 1691 180 0 0 0 chr1 144987224 144987244 -52208188 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1691 270 303 57 19 chr1 144987244 144987326 -52208106 + L1MCa LINE L1 80 163 -6345 6 1691 228 250 0 0 chr1 144987497 144987549 -52207883 + L1MCa LINE L1 466 517 -5991 6 1691 246 269 127 18 chr1 144987687 144987797 -52207635 + L1MCb LINE L1 651 772 -5273 6 1691 284 254 44 0 chr1 144988147 144988261 -52207171 - L1MC3 LINE L1 -178 7607 7489 6 1691 1000 266 131 45 chr1 144988298 144988464 -52206968 - L1MCb LINE L1 -2448 4116 3930 6 1691 1257 90 0 0 chr1 144988464 144988641 -52206791 + (TTC)n Simple_repeat Simple_repeat 2 178 0 6 1691 1000 266 131 45 chr1 144988641 144989190 -52206242 - L1MCb LINE L1 -2635 3929 3339 6 1691 516 254 90 0 chr1 144989324 144989446 -52205986 - RSINE1 SINE B4 -31 134 2 6 1691 22 0 0 0 chr1 144989828 144989850 -52205582 + AT_rich Low_complexity Low_complexity 1 22 0 6 1691 1390 207 105 36 chr1 144991255 144991616 -52203816 + RMER5 LTR ERV1 147 532 -2 6 1691 254 316 95 42 chr1 144991707 144992064 -52203368 - L1MCb LINE L1 -4721 2030 1655 6 1691 1472 181 94 105 chr1 144992119 144992501 -52202931 + ORR1C1 LTR MaLR 1 378 0 6 1691 1022 237 10 112 chr1 144992508 144992812 -52202620 + ORR1D1 LTR MaLR 24 296 -78 6 1691 384 119 0 0 chr1 144992819 144992878 -52202554 + (GGA)n Simple_repeat Simple_repeat 3 61 0 6 1691 481 308 129 35 chr1 144993059 144993696 -52201736 - L1MCb LINE L1 -5352 1399 595 6 1691 532 323 48 24 chr1 144993913 144994208 -52201224 - L1MCb LINE L1 -5679 366 65 6 1691 192 97 0 0 chr1 144995122 144995153 -52200279 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1691 463 273 57 8 chr1 144997905 144998027 -52197405 + B1_Mur3 SINE Alu 21 148 -1 6 1691 387 296 58 19 chr1 144998096 144998332 -52197100 + L1M2 LINE L1 1798 2067 -4782 6 1691 363 262 86 46 chr1 144998542 144998694 -52196738 + L1M2 LINE L1 2934 3091 -3754 6 1691 447 292 105 48 chr1 144998694 144999086 -52196346 + L1M2 LINE L1 4652 5065 -1780 6 1691 1013 258 151 45 chr1 144999101 144999478 -52195954 + MTD LTR MaLR 1 417 -2 6 1691 400 303 113 46 chr1 144999478 145000000 -52195432 + L1M2 LINE L1 5073 5629 -1216 6 1691 243 241 69 0 chr1 145000167 145000254 -52195178 + L1M3 LINE L1 5105 5197 -943 1 1691 413 59 0 0 chr1 145000363 145000414 -52195018 + L1_Mus1 LINE L1 6360 6410 -157 2 1691 636 130 2 6 chr1 145000413 145000526 -52194906 + L1_Mus3 LINE L1 6142 6252 -315 3 1691 1786 134 52 58 chr1 145001263 145001589 -52193843 - ORR1A3 LTR MaLR -2 324 1 4 1691 193 196 96 19 chr1 145001943 145001995 -52193437 - MIR3 SINE MIR -52 156 101 5 1691 15649 104 151 2 chr1 145002627 145006704 -52188728 - L1Md_F2 LINE L1 -1 6581 1203 6 1691 5487 136 3 81 chr1 145006670 145007704 -52187728 - L1Md_F LINE L1 -5380 1139 187 7 1691 322 312 73 68 chr1 145007709 145007929 -52187503 + Charlie2a DNA MER1_type 1 221 -2640 8 1691 343 261 57 32 chr1 145008037 145008160 -52187272 + Charlie2a DNA MER1_type 1910 2035 -826 8 1691 504 287 60 66 chr1 145008170 145008353 -52187079 + B3A SINE B2 1 182 -16 9 1691 423 56 0 0 chr1 145008374 145008428 -52187004 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1691 335 348 133 0 chr1 145008508 145008689 -52186743 + Lx8 LINE L1 6817 7021 -452 1 1691 1334 116 4 9 chr1 145008715 145008941 -52186491 - Lx LINE L1 -2 6652 6428 1 1691 3215 76 16 0 chr1 145009068 145009500 -52185932 + Lx LINE L1 5623 6061 -593 1 1691 2969 175 95 19 chr1 145009500 145010140 -52185292 - RMER6C LTR ERVK -1 689 1 1 1691 299 338 117 51 chr1 145010164 145010557 -52184875 + Lx8 LINE L1 7040 7458 -15 1 1691 383 298 97 42 chr1 145010557 145010865 -52184567 + Charlie2a DNA MER1_type 2037 2361 -500 8 1691 5460 40 3 0 chr1 145011130 145011786 -52183646 + L1Md_F2 LINE L1 5913 6570 -12 1 1691 23 0 0 0 chr1 145011790 145011813 -52183619 + AT_rich Low_complexity Low_complexity 1 23 0 1 1691 614 200 5 5 chr1 145012242 145012438 -52182994 + GA-rich Low_complexity Low_complexity 1 196 0 1 1691 1004 257 101 20 chr1 145012519 145012865 -52182567 - ORR1D1 LTR MaLR 0 374 1 1 1691 340 320 120 80 chr1 145013176 145013475 -52181957 + MLT1A LTR MaLR 7 317 -57 1 1691 775 341 39 35 chr1 145013544 145013827 -52181605 - B4 SINE B4 -4 288 5 2 1691 227 200 0 44 chr1 145014777 145014845 -52180587 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 2 1691 492 48 0 0 chr1 145016345 145016408 -52179024 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1691 582 54 0 0 chr1 145016408 145016481 -52178951 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1691 195 42 0 0 chr1 145017304 145017328 -52178104 + (CTCTG)n Simple_repeat Simple_repeat 2 25 0 2 1691 411 21 0 0 chr1 145017411 145017459 -52177973 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1691 3700 229 33 24 chr1 145017870 145018693 -52176739 + Lx5 LINE L1 6221 7050 0 2 1691 217 177 15 46 chr1 145018835 145018900 -52176532 + G-rich Low_complexity Low_complexity 3 65 0 2 1691 2405 155 37 2 chr1 145021313 145021715 -52173717 + MTC LTR MaLR 3 418 -3 2 1691 837 256 64 5 chr1 145022291 145022495 -52172937 - B3 SINE B2 0 216 1 2 1691 5000 33 14 19 chr1 145022799 145023423 -52172009 + L1Md_F3 LINE L1 5949 6569 -15 3 1691 1897 186 45 0 chr1 145023655 145024009 -52171423 + ORR1C1 LTR MaLR 9 378 0 3 1691 393 198 0 0 chr1 145024549 145024635 -52170797 + GA-rich Low_complexity Low_complexity 1 86 0 3 1691 223 320 53 16 chr1 145026434 145026522 -52168910 - PB1D10 SINE Alu -50 99 11 3 1691 32 43 0 0 chr1 145028348 145028394 -52167038 + AT_rich Low_complexity Low_complexity 1 46 0 3 1691 984 245 90 23 chr1 145028461 145028896 -52166536 + L1_Mur3 LINE L1 1311 1774 -4106 3 1691 476 219 28 9 chr1 145028908 145029014 -52166418 - B1_Mur2 SINE Alu 0 149 42 3 1691 336 378 11 7 chr1 145029020 145029297 -52166135 + L1_Mur3 LINE L1 1762 2039 -3841 3 1691 652 154 7 65 chr1 145029658 145029797 -52165635 - RLTR22_Mur LTR ERVK -127 1721 1591 3 1691 1001 227 17 9 chr1 145029870 145030101 -52165331 - RLTR22_Mur LTR ERVK -1043 805 573 3 1691 2276 288 85 18 chr1 145030103 145031119 -52164313 + L1_Mur3 LINE L1 4215 5298 -582 3 1691 668 249 12 29 chr1 145031150 145031320 -52164112 + Lx7 LINE L1 7134 7300 -396 3 1691 3000 172 11 23 chr1 145031325 145031889 -52163543 + Lx3C LINE L1 5796 6352 -624 3 1691 507 153 182 0 chr1 145031885 145032022 -52163410 + Lx3C LINE L1 6785 6946 -30 3 1691 198 71 0 0 chr1 145032177 145032205 -52163227 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1691 183 72 47 23 chr1 145032223 145032266 -52163166 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1691 6248 71 58 5 chr1 145032274 145033125 -52162307 - L1Md_F2 LINE L1 -3 6579 5684 4 1691 268 226 91 36 chr1 145033124 145033234 -52162198 + Lx7 LINE L1 7566 7681 -15 3 1691 419 227 63 14 chr1 145033242 145033385 -52162047 + L1_Mur3 LINE L1 5285 5434 -446 3 1691 459 0 0 0 chr1 145033386 145033437 -52161995 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 4 1691 2356 89 50 3 chr1 145033442 145033803 -52161629 + Lx3_Mus LINE L1 6012 6389 -620 4 1691 662 141 62 37 chr1 145033803 145033965 -52161467 + Lx3_Mus LINE L1 6844 7009 0 4 1691 228 246 15 30 chr1 145034162 145034229 -52161203 + L1_Rod LINE L1 5453 5518 -329 4 1691 263 277 45 57 chr1 145035876 145035964 -52159468 - MER63D DNA AcHobo -682 379 293 4 1691 3244 72 4 22 chr1 145035966 145036420 -52159012 + L1Md_F2 LINE L1 6137 6582 0 4 1691 346 301 97 7 chr1 145036786 145036930 -52158502 - MLT1A LTR MaLR -214 160 4 4 1691 941 265 105 30 chr1 145037623 145037919 -52157513 - MTD LTR MaLR 0 419 102 4 1691 5616 38 0 0 chr1 145039804 145040471 -52154961 + L1Md_T LINE L1 5916 6582 0 5 1691 3152 56 2 8 chr1 145043248 145043644 -52151788 + MTA_Mm LTR MaLR 3 396 0 5 1691 417 54 0 0 chr1 145044160 145044216 -52151216 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1691 372 94 0 0 chr1 145044216 145044269 -52151163 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1691 23 33 0 0 chr1 145045264 145045294 -52150138 + AT_rich Low_complexity Low_complexity 1 30 0 5 1691 578 266 103 6 chr1 145045431 145045605 -52149827 + B3A SINE B2 2 192 -6 5 1691 505 229 95 32 chr1 145046289 145046415 -52149017 - Lx8 LINE L1 -254 7219 7086 5 1691 26 50 0 0 chr1 145046690 145046730 -52148702 + AT_rich Low_complexity Low_complexity 1 40 0 5 1691 604 283 58 33 chr1 145047121 145047362 -52148070 + RLTR12B LTR ERVK 66 312 -216 5 1691 396 299 96 32 chr1 145047354 145047572 -52147860 + RLTR12B LTR ERVK 255 486 -42 5 1691 291 335 114 19 chr1 145047797 145047955 -52147477 + LTR33 LTR ERVL 340 512 -3 6 1691 231 368 63 23 chr1 145048593 145048768 -52146664 + LTR89 LTR ERVL? 353 534 -345 6 1691 192 268 194 42 chr1 145048998 145049142 -52146290 - MIRb SINE MIR -57 211 46 6 1691 4723 142 10 23 chr1 145050432 145051219 -52144213 - Lx3B LINE L1 -5 6968 6192 6 1691 3923 119 14 132 chr1 145051219 145051428 -52144004 + Lx3B LINE L1 5236 5441 -1532 6 1691 957 71 0 0 chr1 145051428 145051555 -52143877 + B1_Mus2 SINE Alu 21 147 0 6 1691 3923 119 14 132 chr1 145051555 145052362 -52143070 + Lx3B LINE L1 5442 6242 -731 6 1691 401 239 28 12 chr1 145053229 145053336 -52142096 - B3 SINE B2 -58 135 20 6 1691 374 333 51 0 chr1 145054306 145054423 -52141009 + ID_B1 SINE B4 83 205 -19 6 1691 204 146 0 24 chr1 145054445 145054487 -52140945 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1691 609 310 6 19 chr1 145054648 145054809 -52140623 + B3 SINE B2 20 178 -38 6 1691 243 61 0 0 chr1 145054813 145054846 -52140586 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 6 1691 21 0 0 0 chr1 145055027 145055048 -52140384 + AT_rich Low_complexity Low_complexity 1 21 0 7 1691 3174 60 2 2 chr1 145055211 145055611 -52139821 - MTB LTR MaLR 0 400 1 7 1691 1345 54 26 21 chr1 145056774 145056963 -52138469 - L1Md_F3 LINE L1 0 6584 6395 7 1691 1316 46 6 0 chr1 145056963 145057136 -52138296 + L1Md_F3 LINE L1 5858 6031 -553 7 1691 4311 152 28 35 chr1 145057135 145058057 -52137375 + L1Md_A LINE L1 290 1205 -5411 7 1691 34909 30 0 0 chr1 145058063 145062481 -52132951 + L1Md_A LINE L1 1170 5586 -297 7 1691 8832 15 0 0 chr1 145062481 145063477 -52131955 + L1Md_A LINE L1 5587 6582 0 7 1691 9555 21 0 0 chr1 145063477 145064633 -52130799 + L1Md_T LINE L1 4431 5586 -297 7 1691 8048 54 0 0 chr1 145064633 145065628 -52129804 + L1Md_T LINE L1 5587 6581 -1 7 1691 694 35 0 0 chr1 145065628 145065715 -52129717 + L1Md_F3 LINE L1 6019 6105 -479 7 1691 280 274 0 10 chr1 145065879 145065982 -52129450 + L1MB8 LINE L1 6039 6140 -38 7 1691 229 314 73 45 chr1 145066418 145066528 -52128904 - MLT1E2 LTR MaLR -469 158 46 7 1691 207 0 0 0 chr1 145068537 145068560 -52126872 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1691 216 97 0 0 chr1 145068693 145068724 -52126708 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1691 7921 45 3 4 chr1 145069557 145070524 -52124908 + L1Md_F2 LINE L1 5617 6582 0 8 1691 302 294 82 61 chr1 145071069 145071082 -52124350 + Lx8 LINE L1 7002 7014 -459 8 1691 852 85 0 0 chr1 145071082 145071200 -52124232 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 8 1691 302 294 82 61 chr1 145071200 145071382 -52124050 + Lx8 LINE L1 7015 7201 -272 8 1691 25 31 0 0 chr1 145072149 145072181 -52123251 + AT_rich Low_complexity Low_complexity 1 32 0 8 1691 708 98 62 50 chr1 145072181 145072342 -52123090 - Lx LINE L1 0 6654 6492 8 1691 958 134 68 23 chr1 145072656 145072832 -52122600 + Lx LINE L1 6311 6494 -160 8 1691 271 364 58 0 chr1 145074416 145074537 -52120895 + MER58A DNA MER1_type 24 151 -73 8 1691 1337 73 0 6 chr1 145074598 145074778 -52120654 + L1Md_F2 LINE L1 6385 6563 -19 8 1691 510 61 0 0 chr1 145074790 145074856 -52120576 + (GAAAA)n Simple_repeat Simple_repeat 4 69 0 8 1691 221 0 0 33 chr1 145074997 145075027 -52120405 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1691 219 299 0 22 chr1 145076655 145076744 -52118688 + A-rich Low_complexity Low_complexity 3 89 0 9 1691 1212 66 0 0 chr1 145077097 145077264 -52118168 + (TC)n Simple_repeat Simple_repeat 2 168 0 9 1691 444 318 88 36 chr1 145077264 145077515 -52117917 + LTR40c LTR ERVL 109 372 -93 9 1691 33168 75 3 3 chr1 145077522 145083058 -52112374 - L1Md_F LINE L1 0 5883 347 9 1691 199 243 0 0 chr1 145084513 145084550 -52110882 + MIR SINE MIR 43 79 -129 9 1691 1200 296 76 57 chr1 145084559 145085312 -52110120 - Lx7 LINE L1 -1195 6501 5735 9 1691 252 77 0 0 chr1 145088300 145088339 -52107093 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1691 244 371 0 30 chr1 145088846 145088946 -52106486 + MIR SINE MIR 153 249 -13 9 1691 324 147 0 0 chr1 145089437 145089512 -52105920 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 9 1691 1202 306 54 10 chr1 145090376 145090859 -52104573 + RMER5 LTR ERV1 31 534 0 1 1691 503 294 40 32 chr1 145092551 145092804 -52102628 - Lx8 LINE L1 -18 7455 7201 1 1691 251 437 6 28 chr1 145092818 145092997 -52102435 + MLT1J-int LTR MaLR 1184 1358 -29 1 1691 396 289 92 0 chr1 145092998 145093216 -52102216 + L1MB2 LINE L1 5902 6139 -32 1 1691 312 358 0 44 chr1 145093684 145093798 -52101634 + PB1D7 SINE Alu 4 112 -8 1 1691 3339 213 97 12 chr1 145093798 145094633 -52100799 + Lx7 LINE L1 6512 7417 -279 1 1691 383 38 19 0 chr1 145094642 145094695 -52100737 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1691 277 250 42 71 chr1 145094709 145094877 -52100555 + Lx7 LINE L1 7534 7696 0 1 1691 491 326 102 20 chr1 145094912 145095206 -52100226 + MER2 DNA MER2_type 24 341 -4 1 1691 22 0 0 0 chr1 145095860 145095882 -52099550 + AT_rich Low_complexity Low_complexity 1 22 0 1 211 22 0 0 0 chr1 145096690 145096712 -52098720 + AT_rich Low_complexity Low_complexity 1 22 0 1 1692 522 355 138 31 chr1 145097851 145098438 -52096994 + L2 LINE L2 1947 2596 -823 1 1692 270 95 0 0 chr1 145098547 145098589 -52096843 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1692 357 24 0 0 chr1 145098600 145098642 -52096790 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1692 397 279 185 44 chr1 145098646 145098781 -52096651 + B4A SINE B4 1 154 -138 1 1692 5810 147 17 5 chr1 145098895 145099558 -52095874 - RMER17B LTR ERVK 0 958 286 1 1692 757 30 0 0 chr1 145099558 145099658 -52095774 - L1_Mus2 LINE L1 0 6566 6467 1 1692 5810 147 17 5 chr1 145099658 145099941 -52095491 - RMER17B LTR ERVK -673 285 1 1 1692 331 277 20 0 chr1 145101103 145101204 -52094228 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 1 1692 273 163 61 10 chr1 145101261 145101360 -52094072 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1692 200 356 105 22 chr1 145101667 145101848 -52093584 - MIRb SINE MIR -15 253 58 1 1692 180 0 0 0 chr1 145102199 145102219 -52093213 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1692 22 0 0 0 chr1 145102220 145102242 -52093190 + AT_rich Low_complexity Low_complexity 1 22 0 1 1692 208 98 33 89 chr1 145102495 145102585 -52092847 + (TTTG)n Simple_repeat Simple_repeat 1 85 0 1 1692 189 0 0 0 chr1 145102860 145102881 -52092551 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1692 24 0 0 0 chr1 145103526 145103550 -52091882 + AT_rich Low_complexity Low_complexity 1 24 0 1 1692 1132 158 108 0 chr1 145104906 145105109 -52090323 - URR1B DNA MER1_type 0 225 1 1 1692 244 217 42 28 chr1 145107500 145107571 -52087861 + ID4_ SINE ID 2 73 -10 1 1692 4085 99 5 3 chr1 145107647 145108224 -52087208 - L1_Mus3 LINE L1 -2 6636 6059 1 1692 11884 140 38 16 chr1 145110066 145112066 -52083366 + MERVL_2A-int LTR ERVL 3478 5520 -241 1 1692 217 64 62 21 chr1 145112142 145112190 -52083242 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 1692 286 148 31 47 chr1 145112192 145112256 -52083176 + ORR1A3-int LTR MaLR 567 629 -1334 1 1692 274 93 0 0 chr1 145112261 145112304 -52083128 + MERVL_2A-int LTR ERVL 5443 5485 0 1 1692 4503 72 7 0 chr1 145112304 145112883 -52082549 + MT2B2 LTR ERVL 1 583 -1 1 1692 24 32 0 0 chr1 145113356 145113387 -52082045 + AT_rich Low_complexity Low_complexity 1 31 0 1 1692 241 290 58 0 chr1 145114134 145114203 -52081229 + BLACKJACK DNA AcHobo 278 350 -2594 1 1692 243 0 0 0 chr1 145114243 145114270 -52081162 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1692 315 0 0 0 chr1 145114473 145114508 -52080924 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1692 578 304 64 84 chr1 145114617 145114976 -52080456 + BLACKJACK DNA AcHobo 593 944 -2000 1 1692 1001 143 21 0 chr1 145114976 145115165 -52080267 - L1VL2 LINE L1 -1246 4637 4445 1 1692 6991 57 1 3 chr1 145115175 145116087 -52079345 - L1_Mus1 LINE L1 0 6654 5667 1 1692 17533 132 26 17 chr1 145116086 145118212 -52077220 - L1VL2 LINE L1 -1428 4455 2327 1 1692 5000 38 5 2 chr1 145118212 145118817 -52076615 - L1Md_F3 LINE L1 -3 6581 5975 1 1692 17533 141 25 20 chr1 145118817 145120725 -52074707 - L1VL2 LINE L1 -3557 2326 395 1 1692 189 0 0 0 chr1 145120754 145120775 -52074657 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1692 378 42 0 0 chr1 145120844 145120892 -52074540 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1692 226 333 43 43 chr1 145120935 145121073 -52074359 + BLACKJACK DNA AcHobo 1473 1610 -1334 1 1692 624 331 63 66 chr1 145121204 145121631 -52073801 + MLT1C LTR MaLR 34 459 -8 1 1692 359 342 6 32 chr1 145121627 145121784 -52073648 + MER58A DNA MER1_type 72 224 0 1 1692 1238 295 53 10 chr1 145121788 145122275 -52073157 + BLACKJACK DNA AcHobo 1629 2136 -808 1 1692 355 292 17 42 chr1 145122502 145122620 -52072812 + PB1D10 SINE Alu 3 117 0 1 1692 229 304 0 0 chr1 145122643 145122699 -52072733 + B3 SINE B2 1 56 -160 1 1692 1824 174 86 47 chr1 145122699 145123104 -52072328 + MTC LTR MaLR 1 421 0 1 1692 22 0 0 0 chr1 145123460 145123482 -52071950 + AT_rich Low_complexity Low_complexity 1 22 0 1 1692 225 341 43 21 chr1 145123483 145123576 -52071856 + B1F1 SINE Alu 53 147 -2 1 1692 821 261 97 53 chr1 145123655 145123954 -52071478 - Lx6 LINE L1 -683 6777 6466 1 1692 2178 247 112 19 chr1 145123943 145124567 -52070865 + Lx6 LINE L1 6770 7451 -9 1 1692 30 45 0 0 chr1 145124928 145124972 -52070460 + AT_rich Low_complexity Low_complexity 1 44 0 1 1692 380 370 59 35 chr1 145125267 145125522 -52069910 - MLT1H1 LTR MaLR -288 267 7 1 1692 614 257 43 26 chr1 145125757 145126061 -52069371 - L1M5 LINE L1 -2179 3967 3659 1 1692 397 247 29 120 chr1 145126550 145126725 -52068707 - MTEb LTR MaLR -220 159 1 1 1692 252 260 26 13 chr1 145127152 145127230 -52068202 + L1MC4a LINE L1 6488 6568 -1427 1 1692 634 319 78 109 chr1 145127446 145127881 -52067551 + RMER5 LTR ERV1 37 450 -84 1 1692 5589 104 45 69 chr1 145127881 145128863 -52066569 + RMER17B LTR ERVK 1 958 0 1 1692 634 319 78 109 chr1 145128863 145128941 -52066491 + RMER5 LTR ERV1 451 534 0 1 1692 1990 148 0 10 chr1 145129360 145129673 -52065759 - RLTR10E LTR ERVK -1 310 1 1 1692 2500 160 0 5 chr1 145130359 145130792 -52064640 - Lx5 LINE L1 -115 5762 5332 1 1692 1065 209 157 50 chr1 145130796 145131179 -52064253 + Lx5 LINE L1 5759 6182 -868 1 1692 30386 76 1 7 chr1 145131179 145136408 -52059024 + L1Md_F2 LINE L1 387 5585 -298 1 1692 7925 52 3 3 chr1 145136409 145137404 -52058028 + L1Md_F2 LINE L1 5587 6581 -1 1 1692 6591 55 1 10 chr1 145137572 145139340 -52056092 + L1Md_Gf LINE L1 271 2120 -3766 1 1692 1829 18 0 0 chr1 145139339 145139556 -52055876 + L1Md_T LINE L1 5370 5586 -297 1 1692 8304 30 7 0 chr1 145139557 145140573 -52054859 + L1Md_T LINE L1 5588 6582 0 1 1692 1507 271 101 56 chr1 145140608 145141539 -52053893 + Lx5 LINE L1 6138 7404 -56 1 1692 317 43 21 0 chr1 145141552 145141599 -52053833 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1692 366 157 0 0 chr1 145141713 145141796 -52053636 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1 1692 578 248 31 0 chr1 145141976 145142105 -52053327 - B1_Mur1 SINE Alu -15 134 2 1 1692 441 339 50 25 chr1 145142472 145142914 -52052518 - L1M5 LINE L1 -3298 2848 2396 1 1692 198 143 0 0 chr1 145143389 145143424 -52052008 + (TAG)n Simple_repeat Simple_repeat 3 37 0 1 1692 287 104 21 0 chr1 145143426 145143474 -52051958 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1692 360 216 75 149 chr1 145143530 145143643 -52051789 - RSINE1 SINE B4 0 165 52 1 1692 999 75 30 0 chr1 145143643 145143776 -52051656 + B1_Mus2 SINE Alu 1 137 -10 1 1692 387 0 0 0 chr1 145143776 145143819 -52051613 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1692 360 216 75 149 chr1 145143819 145143878 -52051554 - RSINE1 SINE B4 -114 51 6 1 1692 466 95 0 0 chr1 145144062 145144125 -52051307 + L1Md_T LINE L1 5524 5586 -297 1 1692 8402 38 0 0 chr1 145144125 145145121 -52050311 + L1Md_T LINE L1 5587 6582 0 1 1692 466 95 0 0 chr1 145145149 145145212 -52050220 + L1Md_F2 LINE L1 5524 5586 -297 1 1692 7835 51 7 4 chr1 145145212 145146190 -52049242 + L1Md_F2 LINE L1 5587 6567 -15 1 1692 288 77 0 0 chr1 145146241 145146280 -52049152 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1692 370 264 159 56 chr1 145146582 145146663 -52048769 + L1M2 LINE L1 5021 5116 -1027 1 1692 246 32 0 0 chr1 145146663 145146694 -52048738 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1692 370 264 159 56 chr1 145146694 145146845 -52048587 + L1M2 LINE L1 5117 5276 -867 1 1692 1661 299 108 43 chr1 145147210 145148877 -52046555 + L1MA4 LINE L1 3563 5338 -805 1 1692 8520 30 0 0 chr1 145148893 145149884 -52045548 + L1Md_T LINE L1 5587 6577 -5 1 1692 490 298 54 69 chr1 145149892 145150224 -52045208 + L1MA4 LINE L1 5317 5643 -657 1 1692 1452 107 0 104 chr1 145150225 145150476 -52044956 - MTB_Mm LTR MaLR -2 405 181 1 1692 12154 89 46 1 chr1 145150484 145153087 -52042345 - L1_Mus3 LINE L1 0 6638 4010 1 1692 1412 39 6 0 chr1 145153087 145153266 -52042166 - MTB_Mm LTR MaLR -220 180 1 1 1692 636 228 105 33 chr1 145153268 145153544 -52041888 + L1MA4 LINE L1 5641 5936 -364 1 1692 189 0 0 0 chr1 145154032 145154053 -52041379 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1692 366 23 0 0 chr1 145154719 145154762 -52040670 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1692 263 313 15 0 chr1 145155973 145156040 -52039392 - MLT1D LTR MaLR -118 387 320 1 1692 320 317 50 52 chr1 145156182 145156445 -52038987 + MLT1A1 LTR MaLR 90 387 -21 1 1692 478 298 33 33 chr1 145156492 145156676 -52038756 - MLT1D LTR MaLR -291 214 31 1 1692 355 263 29 39 chr1 145156871 145156974 -52038458 + RSINE1 SINE B4 2 103 -62 1 1692 72 40 0 0 chr1 145157026 145157126 -52038306 + AT_rich Low_complexity Low_complexity 1 100 0 1 1692 231 136 16 33 chr1 145158543 145158604 -52036828 + CT-rich Low_complexity Low_complexity 3 62 0 1 1692 2882 235 110 39 chr1 145159084 145160916 -52034516 + RMER1A Other Other 1 1018 -12 1 1692 693 262 70 82 chr1 145161930 145162200 -52033232 + B4 SINE B4 5 271 -21 1 1692 644 67 11 0 chr1 145162208 145162298 -52033134 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 1692 210 118 0 0 chr1 145162298 145162331 -52033101 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1692 243 88 0 0 chr1 145163959 145163993 -52031439 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1692 1215 166 0 0 chr1 145164576 145164787 -52030645 + Lx2 LINE L1 6158 6368 -629 1 1692 9703 69 25 3 chr1 145164789 145166184 -52029248 + Lx3A LINE L1 4486 5907 -1074 1 1692 315 0 0 0 chr1 145166184 145166219 -52029213 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 1692 7949 117 47 15 chr1 145166219 145167266 -52028166 + Lx3A LINE L1 5908 6978 -3 1 1692 2346 68 3 3 chr1 145167321 145167630 -52027802 + L1_Mus2 LINE L1 6258 6566 0 1 1692 3481 152 22 0 chr1 145167633 145168212 -52027220 + Lx2 LINE L1 6405 6996 -1 1 1692 486 120 0 0 chr1 145168770 145168845 -52026587 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1692 25 0 0 0 chr1 145169426 145169451 -52025981 + AT_rich Low_complexity Low_complexity 1 25 0 1 1692 531 283 233 42 chr1 145170853 145171166 -52024266 - MER21B LTR ERV1 -103 760 388 1 1692 302 233 80 80 chr1 145171214 145171326 -52024106 - MER21B LTR ERV1 -660 203 92 1 1692 232 290 98 45 chr1 145172279 145172391 -52023041 - MIR SINE MIR -53 209 92 1 1692 200 128 51 0 chr1 145173420 145173459 -52021973 + GA-rich Low_complexity Low_complexity 2 42 0 1 1692 285 284 27 9 chr1 145174546 145174656 -52020776 - L1M3 LINE L1 -865 5278 5167 1 1692 213 43 64 21 chr1 145174936 145174983 -52020449 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1692 1173 68 0 0 chr1 145174986 145175134 -52020298 - B1_Mus1 SINE Alu 0 148 1 2 1692 403 280 101 55 chr1 145175203 145175357 -52020075 - L1M3 LINE L1 -1279 4861 4692 1 1692 189 0 0 0 chr1 145175357 145175378 -52020054 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1692 403 280 101 55 chr1 145175378 145175461 -52019971 - L1M3 LINE L1 -1449 4691 4613 1 1692 3578 120 2 14 chr1 145175485 145176045 -52019387 - Lx3_Mus LINE L1 -1 7008 6456 2 1692 292 297 120 12 chr1 145176049 145176291 -52019141 + L1MB1 LINE L1 5642 5909 -280 2 1692 556 314 72 0 chr1 145177347 145177500 -52017932 + RSINE1 SINE B4 2 165 0 2 1692 1933 179 20 25 chr1 145177831 145178177 -52017255 - L1_Mur2 LINE L1 -660 5217 4870 2 1692 3087 49 8 8 chr1 145178177 145178565 -52016867 + RLTR10 LTR ERVK 1 388 -2 2 1692 1933 179 20 25 chr1 145178565 145178624 -52016808 - L1_Mur2 LINE L1 -1008 4869 4814 2 1692 6485 105 26 33 chr1 145178623 145180061 -52015371 + L1_Mus4 LINE L1 5216 6635 -1 2 1692 2213 77 0 0 chr1 145180056 145180369 -52015063 - L1Md_F2 LINE L1 -1578 4305 3993 2 1692 8618 34 6 125 chr1 145180369 145181775 -52013657 + L1Md_F2 LINE L1 4348 5586 -297 2 1692 8008 43 4 5 chr1 145181776 145182769 -52012663 + L1Md_F2 LINE L1 5588 6579 -3 2 1692 25 31 0 0 chr1 145182769 145182801 -52012631 + AT_rich Low_complexity Low_complexity 1 32 0 2 1692 1152 198 175 56 chr1 145183199 145183537 -52011895 + MTD LTR MaLR 5 382 -37 2 1692 266 116 0 0 chr1 145184655 145184698 -52010734 - Lx2B LINE L1 -336 6664 6622 2 1692 1913 169 21 6 chr1 145184698 145185037 -52010395 + Lx2B LINE L1 6652 6995 -5 2 1692 203 188 21 0 chr1 145185055 145185103 -52010329 + T-rich Low_complexity Low_complexity 6 54 0 2 1692 4348 107 110 21 chr1 145185444 145186187 -52009245 - RMER17D2 LTR ERVK 0 809 1 2 1692 22 0 0 0 chr1 145186781 145186803 -52008629 + AT_rich Low_complexity Low_complexity 1 22 0 2 1692 213 246 138 0 chr1 145187129 145187194 -52008238 - B3 SINE B2 -142 74 1 2 1692 277 261 14 0 chr1 145188974 145189043 -52006389 - ID4_ SINE ID -10 73 4 2 1692 830 0 30 0 chr1 145189757 145189857 -52005575 + (GAGAA)n Simple_repeat Simple_repeat 4 106 0 2 1692 282 329 0 0 chr1 145189988 145190096 -52005336 + G-rich Low_complexity Low_complexity 1 108 0 2 1692 191 61 30 0 chr1 145190880 145190913 -52004519 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1692 359 389 70 42 chr1 145191043 145191330 -52004102 - MLT2F LTR ERVL -98 565 271 2 1692 2606 89 2 94 chr1 145191445 145191881 -52003551 - MTA_Mm LTR MaLR 0 396 1 2 1692 353 252 103 11 chr1 145192325 145192413 -52003019 - PB1D10 SINE Alu -11 106 13 2 1692 255 327 68 37 chr1 145192421 145192583 -52002849 + L2 LINE L2 1338 1504 -1915 2 1692 228 86 0 0 chr1 145192636 145192671 -52002761 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1692 452 259 47 81 chr1 145193209 145193381 -52002051 + MER58B DNA MER1_type 172 337 -4 2 1692 358 346 81 19 chr1 145194099 145194258 -52001174 - RMER15 LTR ERVL -11 564 390 2 1692 279 79 0 0 chr1 145194258 145194296 -52001136 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2 1692 358 346 81 19 chr1 145194296 145194345 -52001087 - RMER15 LTR ERVL -186 389 343 2 1692 631 225 81 16 chr1 145194697 145194855 -52000577 - B3A SINE B2 -54 162 1 2 1692 730 260 128 0 chr1 145195926 145196130 -51999302 - MTEa LTR MaLR -148 231 2 2 1692 234 339 0 0 chr1 145196945 145197010 -51998422 - ID_B1 SINE B4 -80 144 80 2 1692 607 316 203 7 chr1 145197424 145197450 -51997982 + MLT1A1 LTR MaLR 57 85 -323 2 1692 351 0 0 0 chr1 145197450 145197489 -51997943 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1692 607 316 203 7 chr1 145197489 145197752 -51997680 + MLT1A1 LTR MaLR 86 402 -6 2 1692 2462 164 20 12 chr1 145197867 145198274 -51997158 + MTC LTR MaLR 4 413 -8 2 1692 421 301 24 24 chr1 145198692 145198818 -51996614 - MLT1A1 LTR MaLR -6 402 277 2 1692 8411 121 32 4 chr1 145199176 145200884 -51994548 - Lx4A LINE L1 -2 7056 5290 2 1692 5187 210 55 25 chr1 145201689 145202203 -51993229 + Lx6 LINE L1 6206 6751 -709 2 1692 513 0 0 0 chr1 145202203 145202260 -51993172 + (GAA)n Simple_repeat Simple_repeat 2 58 0 2 1692 5187 210 55 25 chr1 145202260 145202962 -51992470 + Lx6 LINE L1 6752 7458 -2 2 1692 977 105 0 13 chr1 145203707 145203861 -51991571 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 2 1692 580 307 0 28 chr1 145203886 145204030 -51991402 + B4 SINE B4 126 265 -27 2 1692 457 180 16 0 chr1 145204030 145204158 -51991274 + CT-rich Low_complexity Low_complexity 1 130 0 2 1692 26 0 0 0 chr1 145206499 145206525 -51988907 + AT_rich Low_complexity Low_complexity 1 26 0 2 1692 702 212 0 0 chr1 145207148 145207439 -51987993 + (TG)n Simple_repeat Simple_repeat 1 291 0 2 1692 564 200 0 0 chr1 145207456 145207636 -51987796 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1692 215 333 15 0 chr1 145207719 145207785 -51987647 - ID4 SINE ID -11 72 6 2 1692 719 185 0 8 chr1 145208265 145208396 -51987036 - B1_Mur1 SINE Alu -3 146 17 2 1692 194 337 62 21 chr1 145208495 145208592 -51986840 - MIRc SINE MIR -66 202 102 2 1692 190 309 113 8 chr1 145210471 145210595 -51984837 + MIR SINE MIR 25 161 -101 2 1692 287 25 0 24 chr1 145210624 145210665 -51984767 + (TTG)n Simple_repeat Simple_repeat 1 40 0 2 1692 304 286 40 10 chr1 145210665 145210756 -51984676 - PB1D10 SINE Alu -13 104 11 2 1692 212 347 0 13 chr1 145210688 145210764 -51984668 - ID_B1 SINE B4 -67 157 83 2 1692 867 286 9 18 chr1 145211345 145211562 -51983870 + B3 SINE B2 2 216 0 2 1692 216 97 0 0 chr1 145212410 145212441 -51982991 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1692 3931 20 7 4 chr1 145213085 145213545 -51981887 + L1Md_F3 LINE L1 6121 6581 -3 2 1692 644 258 31 36 chr1 145214028 145214221 -51981211 - B3A SINE B2 -6 192 1 2 1692 396 0 0 0 chr1 145214326 145214370 -51981062 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1692 414 0 0 0 chr1 145215407 145215453 -51979979 + (TTA)n Simple_repeat Simple_repeat 1 46 0 2 1692 4810 107 40 16 chr1 145215454 145216205 -51979227 - Lx2A1 LINE L1 -18 6990 6222 2 1692 3038 41 0 78 chr1 145216568 145216994 -51978438 - L1Md_F2 LINE L1 -12 6570 6178 2 1692 474 271 78 53 chr1 145217144 145217217 -51978215 + CYRA11_Mm Unknown Y-chromosome 95 354 -263 2 1692 1136 163 64 0 chr1 145217217 145217419 -51978013 - URR1B DNA MER1_type 0 225 11 2 1692 588 111 0 0 chr1 145217607 145217697 -51977735 + (TC)n Simple_repeat Simple_repeat 2 91 0 2 1692 226 280 74 21 chr1 145218076 145218171 -51977261 + L2 LINE L2 1682 1781 -1638 2 1692 612 73 0 0 chr1 145218223 145218305 -51977127 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2 1692 294 315 76 38 chr1 145218747 145218932 -51976500 + L2 LINE L2 2570 2761 -658 2 1692 702 288 0 35 chr1 145218971 145219140 -51976292 + RSINE1 SINE B4 3 165 0 2 1692 1162 37 0 0 chr1 145219628 145219764 -51975668 + B1_Mus2 SINE Alu 3 138 -9 2 1692 282 29 0 0 chr1 145219764 145219799 -51975633 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1692 290 26 26 0 chr1 145219877 145219916 -51975516 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1692 380 20 20 0 chr1 145219985 145220034 -51975398 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1692 444 294 0 25 chr1 145220167 145220289 -51975143 + B4A SINE B4 2 120 -172 2 1692 374 57 19 0 chr1 145220440 145220493 -51974939 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1692 1281 149 18 31 chr1 145220879 145221107 -51974325 + URR1B DNA MER1_type 1 225 0 2 1692 180 0 0 0 chr1 145221658 145221678 -51973754 + (GGAAA)n Simple_repeat Simple_repeat 2 21 0 2 1692 345 374 106 33 chr1 145221992 145222321 -51973111 + LTR16E2 LTR ERVL 206 558 -10 2 211 39526 6 1 0 chr1 145222421 145229063 -51966369 - L1Md_A LINE L1 0 6582 1 2 1693 438 118 32 0 chr1 145229481 145229574 -51965858 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 2 1693 2223 108 6 6 chr1 145229599 145229917 -51965515 - ORR1A2 LTR MaLR -9 318 1 2 1693 264 77 0 0 chr1 145230351 145230390 -51965042 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 1693 234 0 0 0 chr1 145231063 145231089 -51964343 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1693 3111 121 17 6 chr1 145231860 145232341 -51963091 - Lx4A LINE L1 0 7058 6573 2 1693 603 273 24 92 chr1 145233089 145233295 -51962137 + B3A SINE B2 7 198 0 2 1693 1589 76 0 0 chr1 145233369 145233592 -51961840 + L1_Mur1 LINE L1 4357 4579 -1307 2 1693 1995 91 105 26 chr1 145233592 145233897 -51961535 + Lx3_Mus LINE L1 6674 7002 -7 2 1693 6658 67 16 1 chr1 145233897 145234885 -51960547 + L1_Mus3 LINE L1 5716 6638 0 2 1693 470 273 76 0 chr1 145235874 145236006 -51959426 + B3A SINE B2 1 142 -56 2 1693 258 56 0 0 chr1 145236033 145236069 -51959363 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1693 466 305 92 27 chr1 145236370 145236661 -51958771 - ERVL-B4-int LTR ERVL -3538 2219 1857 2 1693 762 327 74 28 chr1 145236734 145237214 -51958218 - ERVL-B4-int LTR ERVL -3991 1723 1219 2 1693 875 170 197 0 chr1 145237214 145237402 -51958030 + URR1B DNA MER1_type 1 225 0 2 1693 762 327 74 28 chr1 145237402 145237502 -51957930 - ERVL-B4-int LTR ERVL -4496 1218 1116 2 1693 1093 321 9 48 chr1 145237546 145237883 -51957549 - ORR1E LTR MaLR -32 327 4 2 1693 860 270 58 40 chr1 145237892 145238239 -51957193 - ERVL-B4-int LTR ERVL -4626 1088 736 2 1693 525 309 63 48 chr1 145238488 145238900 -51956532 - ERVL-B4-int LTR ERVL -5149 565 148 2 1693 347 242 44 0 chr1 145238923 145239014 -51956418 - ERVL-B4-int LTR ERVL -5619 95 1 2 1693 283 265 68 10 chr1 145239014 145239101 -51956331 - Ricksha_c DNA MuDR -1144 904 812 2 1693 405 362 81 81 chr1 145239106 145239174 -51956258 - MLT2B1 LTR ERVL -172 348 286 2 1693 3227 36 3 0 chr1 145239174 145239563 -51955869 + L1Md_T LINE L1 6193 6582 0 2 1693 405 362 81 81 chr1 145239563 145239618 -51955814 - MLT2B1 LTR ERVL -235 285 234 2 1693 231 36 0 0 chr1 145239618 145239646 -51955786 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1693 405 362 81 81 chr1 145239646 145239785 -51955647 - MLT2B1 LTR ERVL -287 233 83 2 1693 630 344 10 40 chr1 145239785 145240085 -51955347 + B4A SINE B4 1 291 -1 2 1693 188 149 0 21 chr1 145240121 145240169 -51955263 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 2 1693 229 349 40 27 chr1 145240288 145240473 -51954959 + MIRb SINE MIR 50 243 -25 2 1693 370 278 42 85 chr1 145242108 145242367 -51953065 - L1MA10 LINE L1 -60 6274 6027 2 1693 489 293 41 77 chr1 145242381 145242551 -51952881 + ID_B1 SINE B4 12 175 -49 2 1693 323 261 10 115 chr1 145242467 145242571 -51952861 + PB1D7 SINE Alu 23 115 -5 2 1693 209 250 0 0 chr1 145242595 145242639 -51952793 + GA-rich Low_complexity Low_complexity 2 45 0 2 1693 277 239 0 56 chr1 145243852 145243923 -51951509 + MLT1G LTR MaLR 2 68 -523 3 1693 284 254 25 0 chr1 145243957 145244075 -51951357 + Lx6 LINE L1 7340 7460 0 3 1693 444 311 43 66 chr1 145244086 145244287 -51951145 + B4A SINE B4 4 202 -90 3 1693 578 262 188 4 chr1 145244279 145244513 -51950919 + MLT1G LTR MaLR 315 591 0 3 1693 191 329 85 0 chr1 145244880 145244962 -51950470 - MER5B DNA MER1_type -13 165 77 3 1693 209 111 83 0 chr1 145245659 145245695 -51949737 + A-rich Low_complexity Low_complexity 5 43 0 3 1693 320 248 0 6 chr1 145245724 145245797 -51949635 + B3A SINE B2 77 147 -51 3 1693 339 25 0 0 chr1 145245803 145245843 -51949589 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1693 348 83 0 0 chr1 145246691 145246739 -51948693 + (CATA)n Simple_repeat Simple_repeat 3 50 0 3 1693 400 349 195 40 chr1 145247092 145247665 -51947767 + HAL1 LINE L1 1365 2026 -481 3 1693 226 233 0 0 chr1 145247900 145247943 -51947489 - LTR16D LTR ERVL -3 648 606 3 1693 240 343 67 19 chr1 145248210 145248314 -51947118 - LTR16D LTR ERVL -533 118 10 3 1693 369 245 94 0 chr1 145248414 145248520 -51946912 - PB1D10 SINE Alu 0 117 2 3 1693 1068 263 83 21 chr1 145248941 145249000 -51946432 - ORR1E LTR MaLR 0 359 292 3 1693 306 0 0 0 chr1 145249000 145249034 -51946398 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1693 1068 263 83 21 chr1 145249034 145249312 -51946120 - ORR1E LTR MaLR -68 291 1 3 1693 657 241 135 57 chr1 145249336 145249699 -51945733 - Charlie1a DNA MER1_type -237 1218 827 3 1693 1564 284 81 45 chr1 145249699 145250231 -51945201 - MLT2B3 LTR ERVL -3 551 1 3 1693 1193 307 136 26 chr1 145250231 145250968 -51944464 - Charlie1a DNA MER1_type -728 727 1 3 1693 202 188 0 59 chr1 145251296 145251364 -51944068 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 3 1693 1255 103 27 0 chr1 145251953 145252137 -51943295 + B2_Mm1t SINE B2 2 190 -3 3 1693 317 146 0 35 chr1 145252191 145252248 -51943184 + B2_Mm2 SINE B2 47 101 -94 3 1693 240 111 0 0 chr1 145253073 145253118 -51942314 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1693 11695 155 17 27 chr1 145253474 145254038 -51941394 + L1_Mus4 LINE L1 3620 4172 -1711 3 1693 7695 49 3 2 chr1 145254038 145254994 -51940438 + L1Md_F2 LINE L1 5626 6582 0 3 1693 11695 124 14 16 chr1 145254994 145257460 -51937972 + L1_Mus4 LINE L1 4173 6636 0 3 1693 237 65 0 0 chr1 145257484 145257515 -51937917 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1693 276 317 122 0 chr1 145257527 145257650 -51937782 + B1F2 SINE Alu 2 139 -10 3 1693 196 53 26 26 chr1 145257650 145257689 -51937743 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1693 234 383 12 0 chr1 145257697 145257778 -51937654 + ID4_ SINE ID 1 82 -1 3 1693 2279 198 13 11 chr1 145258003 145258462 -51936970 - Lx9 LINE L1 -394 7250 6791 3 1693 683 185 136 0 chr1 145258456 145258618 -51936814 + Lx9 LINE L1 7289 7472 -172 3 1693 348 88 0 0 chr1 145258618 145258675 -51936757 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1693 315 0 0 0 chr1 145258675 145258710 -51936722 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1693 284 225 87 35 chr1 145260418 145260533 -51934899 + L1ME3A LINE L1 5424 5544 -900 3 1693 303 266 36 48 chr1 145260572 145260655 -51934777 - MER63D DNA AcHobo -688 373 292 3 1693 331 261 126 8 chr1 145260728 145261054 -51934378 + L1ME3A LINE L1 5602 5988 -174 3 1693 403 180 38 30 chr1 145261093 145261225 -51934207 - Lx7 LINE L1 0 7696 7564 3 1693 1960 250 77 9 chr1 145261266 145261802 -51933630 - Lx7 LINE L1 -287 7409 6838 3 1693 1419 279 75 39 chr1 145261799 145262516 -51932916 + L1M2 LINE L1 4358 5100 -1043 3 1693 577 327 85 55 chr1 145263240 145263512 -51931920 + B4 SINE B4 2 281 -11 3 1693 747 149 71 43 chr1 145264652 145264792 -51930640 + B1_Mur4 SINE Alu 7 150 0 3 1693 1262 74 6 0 chr1 145265649 145265824 -51929608 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 3 1693 955 271 5 5 chr1 145266484 145266699 -51928733 + B3 SINE B2 1 215 -1 3 1693 29 60 0 0 chr1 145266699 145266749 -51928683 + AT_rich Low_complexity Low_complexity 1 50 0 3 1693 615 256 0 0 chr1 145266799 145266936 -51928496 + B1_Mur1 SINE Alu 1 137 -12 3 1693 423 0 0 0 chr1 145266936 145266983 -51928449 + (GGA)n Simple_repeat Simple_repeat 3 49 0 3 1693 204 284 48 45 chr1 145266994 145267104 -51928328 + MIRm SINE MIR 52 159 -109 3 1693 7150 15 0 0 chr1 145267320 145268128 -51927304 + L1Md_A LINE L1 5775 6582 0 3 1693 1021 305 11 51 chr1 145268345 145268718 -51926714 + Charlie1b DNA MER1_type 1 358 -165 3 1693 352 312 9 9 chr1 145268730 145268843 -51926589 - Tigger5 DNA MER2_type -3 2403 2291 3 1693 628 294 87 10 chr1 145268839 145269045 -51926387 - Tigger5 DNA MER2_type -2164 242 21 3 1693 252 183 0 48 chr1 145269322 145269385 -51926047 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 3 1693 1252 63 0 11 chr1 145269388 145269565 -51925867 + (GAA)n Simple_repeat Simple_repeat 3 177 0 3 1693 995 32 16 0 chr1 145269565 145269691 -51925741 + (GAAA)n Simple_repeat Simple_repeat 4 131 0 3 1693 241 345 26 17 chr1 145269691 145269806 -51925626 - MLT2B4 LTR ERVL -20 547 432 3 1693 538 292 17 39 chr1 145269865 145270043 -51925389 - MLT2B4 LTR ERVL -382 174 1 3 1693 753 266 133 12 chr1 145270125 145270449 -51924983 + MER47A DNA MER2_type 1 363 -3 3 1693 586 271 88 57 chr1 145270725 145270760 -51924672 - B3 SINE B2 -17 199 170 3 1693 309 51 0 0 chr1 145270760 145270799 -51924633 + (ATTG)n Simple_repeat Simple_repeat 3 41 0 3 1693 751 175 15 22 chr1 145270799 145270955 -51924477 - B2_Mm2 SINE B2 -47 169 2 3 1693 1232 183 82 26 chr1 145271782 145272108 -51923324 + Lx6 LINE L1 5634 5951 -1509 3 1693 2043 208 154 102 chr1 145272107 145272349 -51923083 + Lx7 LINE L1 6829 7091 -605 3 1693 2227 106 19 3 chr1 145272349 145272670 -51922762 + ORR1A3 LTR MaLR 1 326 0 3 1693 2043 208 154 102 chr1 145272670 145272852 -51922580 + Lx7 LINE L1 7092 7332 -364 3 1693 225 65 0 0 chr1 145272852 145272883 -51922549 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 1693 2043 208 154 102 chr1 145272883 145272937 -51922495 + Lx7 LINE L1 7333 7360 -336 3 1693 209 33 33 0 chr1 145272937 145272967 -51922465 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1693 2043 208 154 102 chr1 145272967 145273311 -51922121 + Lx7 LINE L1 7361 7696 0 3 1693 26 64 0 0 chr1 145273390 145273437 -51921995 + AT_rich Low_complexity Low_complexity 1 47 0 3 1693 276 301 175 9 chr1 145273547 145273661 -51921771 - RMER30 DNA MER1_type -36 166 34 3 1693 609 240 71 5 chr1 145273708 145273892 -51921540 - L1M2 LINE L1 -619 5681 5486 3 1693 23 54 0 0 chr1 145273972 145274009 -51921423 + AT_rich Low_complexity Low_complexity 1 37 0 3 1693 297 250 0 68 chr1 145274156 145274229 -51921203 + RLTR18 LTR ERVK 1 68 -548 3 1693 357 250 52 35 chr1 145274633 145274749 -51920683 - RMER1B Other Other -348 718 601 3 1693 206 32 32 0 chr1 145274923 145274954 -51920478 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1693 1172 74 0 0 chr1 145274955 145275103 -51920329 - B1_Mus1 SINE Alu 0 148 1 3 1693 188 79 53 0 chr1 145275238 145275276 -51920156 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1693 777 226 101 11 chr1 145275809 145275997 -51919435 - B3 SINE B2 -11 205 1 3 1693 250 256 76 65 chr1 145276142 145276234 -51919198 - MLT1D LTR MaLR -406 99 7 3 1693 182 311 143 90 chr1 145276433 145276712 -51918720 - L2c LINE L2 -86 3301 3008 3 1693 36674 7 0 0 chr1 145277097 145282467 -51912965 + L1Md_A LINE L1 216 5586 -297 3 1693 9093 1 0 0 chr1 145282467 145283463 -51911969 + L1Md_A LINE L1 5587 6582 0 3 1693 387 92 0 0 chr1 145284247 145284312 -51911120 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 3 1693 27 0 0 0 chr1 145284353 145284380 -51911052 + AT_rich Low_complexity Low_complexity 1 27 0 3 1693 6720 60 6 28 chr1 145284418 145285355 -51910077 - L1_Mus2 LINE L1 0 6566 5650 3 1693 649 168 0 0 chr1 145285355 145285468 -51909964 - L1_Mur2 LINE L1 -2037 3840 3728 3 1693 8395 139 51 10 chr1 145285555 145288210 -51907222 - Lx2 LINE L1 0 6997 4221 3 1693 429 215 0 9 chr1 145288225 145288349 -51907083 - L1VL4 LINE L1 -5790 568 443 3 1693 571 305 186 80 chr1 145289066 145289415 -51906017 - MLT1F2 LTR MaLR -4 556 171 3 1693 33861 42 0 3 chr1 145289415 145294620 -51900812 + L1Md_T LINE L1 305 5589 -297 3 1693 8413 28 5 0 chr1 145294620 145295609 -51899823 + L1Md_T LINE L1 5590 6583 -2 3 1693 7684 21 1 0 chr1 145295609 145296547 -51898885 + L1_Mm LINE L1 4382 5320 -563 3 1693 20585 20 1 2 chr1 145296833 145299366 -51896066 + L1Md_T LINE L1 3056 5586 -297 3 1693 8359 33 4 0 chr1 145299366 145300358 -51895074 + L1Md_T LINE L1 5587 6582 0 3 1693 817 237 57 21 chr1 145300374 145300568 -51894864 + B3 SINE B2 2 202 -14 3 1693 232 331 22 108 chr1 145300716 145300855 -51894577 - MLT1F2 LTR MaLR -427 133 7 3 1693 219 222 18 36 chr1 145300860 145300916 -51894516 + B1_Mus1 SINE Alu 1 55 -93 3 1693 517 304 78 92 chr1 145301350 145301633 -51893799 - RLTR18B LTR ERVK -8 504 226 3 1693 2230 201 97 43 chr1 145301638 145302216 -51893216 + RMER1B Other Other 458 1066 0 3 1693 487 270 208 79 chr1 145302312 145302553 -51892879 - RLTR18B LTR ERVK -335 281 1 3 1693 279 0 0 0 chr1 145302757 145302788 -51892644 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1693 753 70 0 0 chr1 145302806 145302906 -51892526 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 1693 22304 148 51 11 chr1 145303992 145309361 -51886071 - Lx4B LINE L1 -1 7057 1368 3 1693 1610 192 21 0 chr1 145309358 145309725 -51885707 - Lx4B LINE L1 -5775 1209 822 3 1693 214 229 0 0 chr1 145310161 145310196 -51885236 - PB1D9 SINE Alu -81 39 5 3 1693 25 31 0 0 chr1 145310424 145310456 -51884976 + AT_rich Low_complexity Low_complexity 1 32 0 3 1693 810 138 76 42 chr1 145310651 145310795 -51884637 - B1_Mur2 SINE Alu 0 149 1 3 1693 1109 329 89 26 chr1 145310957 145311485 -51883947 - MER68 LTR ERVL -2 561 1 3 1693 234 360 127 21 chr1 145311628 145311770 -51883662 + MIRb SINE MIR 3 159 -109 3 1693 1960 183 87 5 chr1 145311810 145312190 -51883242 - MTD LTR MaLR -8 411 1 3 1693 306 317 20 0 chr1 145312832 145312933 -51882499 + L1MB7 LINE L1 6077 6179 -5 3 1693 647 305 142 41 chr1 145313112 145313499 -51881933 - MER89 LTR ERV1 -8 551 126 3 1693 231 114 0 0 chr1 145313872 145313907 -51881525 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1693 1399 206 190 89 chr1 145313914 145314329 -51881103 - MT2A LTR ERVL -76 457 1 3 1693 198 0 0 0 chr1 145315415 145315437 -51879995 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1693 410 265 0 0 chr1 145315869 145315952 -51879480 + ID4_ SINE ID 1 83 0 3 1693 22 35 0 0 chr1 145316550 145316579 -51878853 + AT_rich Low_complexity Low_complexity 1 29 0 3 1693 1262 67 0 0 chr1 145316737 145316902 -51878530 - B2_Mm2 SINE B2 -28 167 3 3 1693 220 319 35 56 chr1 145317567 145317710 -51877722 - L2c LINE L2 -63 3324 3185 4 1693 243 263 13 0 chr1 145318348 145318424 -51877008 + L1MC1 LINE L1 114 190 -6210 4 1693 274 181 86 12 chr1 145318646 145318739 -51876693 + L1M5 LINE L1 4263 4368 -1778 4 1693 848 257 129 61 chr1 145318826 145318999 -51876433 + L1MC1 LINE L1 4043 4221 -2098 4 1693 4110 46 4 0 chr1 145318999 145319495 -51875937 + L1Md_F2 LINE L1 6070 6567 -15 4 1693 848 257 129 61 chr1 145319495 145319510 -51875922 + L1MC1 LINE L1 4222 4222 -2097 4 1693 207 0 0 0 chr1 145319510 145319533 -51875899 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1693 848 257 129 61 chr1 145319533 145319869 -51875563 + L1MC1 LINE L1 4222 4604 -1715 4 1693 2853 203 53 61 chr1 145319902 145320689 -51874743 + Lx7 LINE L1 6916 7696 0 4 1693 884 290 44 21 chr1 145320702 145321132 -51874300 + L1MC1 LINE L1 4643 5082 -1237 4 1693 621 283 19 10 chr1 145321127 145321334 -51874098 + L1MC1 LINE L1 5660 5868 -649 4 1693 528 259 20 112 chr1 145321337 145321381 -51874051 + B1F SINE Alu 10 50 -99 4 1693 5332 107 23 18 chr1 145321381 145322174 -51873258 + Lx2 LINE L1 6201 6997 0 4 1693 528 259 20 112 chr1 145322174 145322281 -51873151 + B1F SINE Alu 51 147 -2 4 1693 532 345 88 15 chr1 145322289 145322821 -51872611 + L1MC1 LINE L1 5862 6432 -74 4 1693 969 130 125 77 chr1 145322822 145322971 -51872461 + URR1A DNA MER1_type 1 175 -51 4 1693 671 210 265 0 chr1 145322971 145323133 -51872299 + B3 SINE B2 2 206 -10 4 1693 969 130 125 77 chr1 145323133 145323191 -51872241 + URR1A DNA MER1_type 176 218 -8 4 1693 392 308 45 18 chr1 145323329 145323631 -51871801 + L1ME2 LINE L1 4442 4751 -1395 4 1693 529 302 46 7 chr1 145323745 145324028 -51871404 + L1ME2 LINE L1 5679 5972 -192 4 1693 360 279 29 0 chr1 145324151 145324255 -51871177 - B3 SINE B2 -4 212 106 4 1693 260 304 97 11 chr1 145324495 145324588 -51870844 + RSINE1 SINE B4 51 151 -14 4 1693 270 0 0 0 chr1 145324612 145324642 -51870790 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1693 193 273 111 22 chr1 145325478 145325568 -51869864 - MIRb SINE MIR -150 118 21 4 1693 320 264 36 63 chr1 145325609 145325720 -51869712 + PB1D10 SINE Alu 4 127 0 4 1693 190 271 21 0 chr1 145325889 145325937 -51869495 + L2 LINE L2 1942 1990 -1429 4 1693 222 308 78 63 chr1 145326247 145326389 -51869043 - MIRc SINE MIR -119 149 6 4 1693 24 32 0 0 chr1 145326811 145326842 -51868590 + AT_rich Low_complexity Low_complexity 1 31 0 4 1693 1563 162 154 9 chr1 145327185 145327515 -51867917 + ORR1C1 LTR MaLR 1 378 0 4 1693 187 242 45 61 chr1 145328270 145328336 -51867096 - MIRb SINE MIR -82 186 122 4 1693 460 276 118 38 chr1 145328444 145328681 -51866751 - Tigger13a DNA MER2_type -309 462 207 4 1693 568 293 19 102 chr1 145328771 145328976 -51866456 - B3A SINE B2 -2 196 9 4 1693 278 87 22 0 chr1 145329123 145329169 -51866263 + (TTTTC)n Simple_repeat Simple_repeat 1 47 0 4 1693 693 113 0 0 chr1 145329205 145329311 -51866121 - Lx5 LINE L1 -120 6930 6825 4 1693 759 191 35 0 chr1 145329916 145330057 -51865375 - B1_Mus1 SINE Alu 0 148 3 4 1693 25 31 0 0 chr1 145330787 145330819 -51864613 + AT_rich Low_complexity Low_complexity 1 32 0 4 1693 1187 114 0 4 chr1 145331237 145331491 -51863941 + (CA)n Simple_repeat Simple_repeat 1 253 0 4 1693 614 301 43 0 chr1 145331869 145332055 -51863377 + B4A SINE B4 97 290 -2 4 1693 226 210 10 156 chr1 145332025 145332121 -51863311 + B3 SINE B2 131 212 -4 4 1693 1731 137 160 16 chr1 145332635 145332928 -51862504 + ORR1B2 LTR MaLR 3 340 -27 4 1693 4057 185 11 6 chr1 145332928 145333661 -51861771 + Lx4B LINE L1 6314 7050 -8 4 1693 1731 137 160 16 chr1 145333661 145333679 -51861753 + ORR1B2 LTR MaLR 341 359 -8 4 1693 247 239 56 2 chr1 145333945 145334016 -51861416 + MLT1H2 LTR MaLR 415 481 -8 4 1693 309 322 25 17 chr1 145334820 145334940 -51860492 + L2 LINE L2 2490 2610 -809 4 1693 229 256 31 82 chr1 145335417 145335515 -51859917 + MER5A1 DNA MER1_type 1 93 -73 4 1693 2195 96 48 0 chr1 145336412 145336724 -51858708 - ORR1A2 LTR MaLR 0 327 1 4 1693 582 215 62 111 chr1 145337290 145337515 -51857917 - B3 SINE B2 0 216 3 4 1693 261 318 34 36 chr1 145337928 145338075 -51857357 - MLT1D LTR MaLR -44 423 203 4 1693 1205 113 11 0 chr1 145338184 145338361 -51857071 + B2_Mm1t SINE B2 1 179 -14 4 1693 311 68 407 9 chr1 145338393 145338496 -51856936 + B2_Mm2 SINE B2 47 190 -5 4 1693 330 314 29 0 chr1 145338486 145338588 -51856844 - MLT1D LTR MaLR -365 140 36 4 1693 355 297 147 63 chr1 145338939 145339106 -51856326 - RMER12B LTR ERVK -153 1419 1201 4 1693 348 64 0 0 chr1 145339106 145339153 -51856279 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1693 355 293 139 64 chr1 145339153 145339194 -51856238 - RMER12B LTR ERVK -288 1284 1239 4 1693 264 59 0 0 chr1 145339194 145339228 -51856204 + (CATA)n Simple_repeat Simple_repeat 1 34 0 4 1693 814 182 16 32 chr1 145339228 145339393 -51856039 - RMER12B LTR ERVK -144 1260 1103 4 1693 1775 54 0 0 chr1 145339393 145339617 -51855815 + L1Md_F2 LINE L1 5363 5586 -297 4 1693 7907 47 19 0 chr1 145339617 145340582 -51854850 + L1Md_F2 LINE L1 5587 6569 -13 4 1693 6473 145 32 9 chr1 145340596 145341677 -51853755 - RMER12B LTR ERVK -298 1106 1 4 1693 232 243 122 0 chr1 145341870 145341944 -51853488 - ID4_ SINE ID 0 83 1 4 1693 255 344 100 21 chr1 145342263 145342453 -51852979 - L2 LINE L2 -510 2909 2705 4 1693 315 376 98 45 chr1 145342553 145342798 -51852634 + MLT1J LTR MaLR 81 338 -174 4 1693 21 0 0 0 chr1 145343154 145343175 -51852257 + AT_rich Low_complexity Low_complexity 1 21 0 4 1693 1005 249 14 5 chr1 145343273 145343487 -51851945 - B3 SINE B2 0 216 1 4 1693 36 53 0 0 chr1 145343559 145343616 -51851816 + AT_rich Low_complexity Low_complexity 1 57 0 4 1693 991 89 57 0 chr1 145343993 145344150 -51851282 + L1_Mus3 LINE L1 6471 6636 -2 4 1693 2557 175 60 15 chr1 145344362 145345135 -51850297 + RLTR25B LTR ERVK 1 1028 0 4 1693 631 247 131 12 chr1 145345187 145345355 -51850077 + B3A SINE B2 1 188 -10 4 1693 3016 93 12 2 chr1 145345368 145345798 -51849634 - L1_Mus3 LINE L1 -6 6632 6199 4 1693 240 35 0 0 chr1 145345979 145346008 -51849424 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1693 3235 52 0 0 chr1 145346105 145346551 -51848881 + L1Md_F2 LINE L1 6141 6582 0 4 1693 389 340 68 39 chr1 145347161 145347294 -51848138 - MLT2C2 LTR ERVL -252 212 70 4 1693 324 0 0 0 chr1 145347294 145347330 -51848102 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1693 389 340 68 39 chr1 145347330 145347401 -51848031 - MLT2C2 LTR ERVL -395 69 2 4 1693 1053 150 0 0 chr1 145347899 145348079 -51847353 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1693 708 119 0 0 chr1 145348079 145348188 -51847244 + (GAGAA)n Simple_repeat Simple_repeat 4 112 0 4 1693 531 277 175 0 chr1 145348568 145348745 -51846687 - B3 SINE B2 -8 208 1 4 1693 497 286 58 97 chr1 145352340 145352467 -51842965 + MER44A DNA MER2_type 81 217 -122 4 1693 393 58 0 0 chr1 145352467 145352519 -51842913 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1693 497 286 58 97 chr1 145352519 145352650 -51842782 + MER44A DNA MER2_type 218 329 -10 4 1693 334 59 0 0 chr1 145352861 145352912 -51842520 - L1_Mm LINE L1 -2387 3496 3446 4 211 36203 43 1 3 chr1 145352915 145359353 -51836079 - L1Md_T LINE L1 0 6585 69 4 1694 7111 109 7 0 chr1 145359353 145360463 -51834969 - L1_Mm LINE L1 -2423 3460 2343 4 1694 13347 84 21 2 chr1 145360461 145363164 -51832268 + L1_Mus2 LINE L1 3812 6566 0 4 1694 267 143 0 58 chr1 145363293 145363327 -51832105 + ORR1C2 LTR MaLR 1 34 -333 4 1694 225 0 0 0 chr1 145363327 145363352 -51832080 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1694 267 143 0 58 chr1 145363352 145363369 -51832063 + ORR1C2 LTR MaLR 35 49 -318 4 1694 1244 120 31 31 chr1 145363366 145363590 -51831842 + ORR1C2-int LTR MaLR 1286 1509 0 4 1694 1635 163 22 189 chr1 145363590 145364051 -51831381 + ORR1C2 LTR MaLR 1 384 0 4 1694 216 97 0 0 chr1 145364490 145364521 -51830911 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1694 27 0 0 0 chr1 145365643 145365670 -51829762 + AT_rich Low_complexity Low_complexity 1 27 0 4 1694 716 318 116 36 chr1 145366062 145366313 -51829119 + MTEa LTR MaLR 3 273 -106 4 1694 1989 159 43 54 chr1 145366925 145367298 -51828134 + ORR1C1 LTR MaLR 1 369 -9 4 1694 266 0 0 29 chr1 145367724 145367759 -51827673 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1694 3324 72 45 17 chr1 145367759 145367855 -51827577 - Lx3_Mus LINE L1 -19 6990 6890 4 1694 180 0 0 0 chr1 145367855 145367875 -51827557 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 4 1694 3324 72 45 17 chr1 145367875 145368247 -51827185 - Lx3_Mus LINE L1 -120 6889 6510 4 1694 228 330 9 54 chr1 145368320 145368432 -51827000 + ORR1E LTR MaLR 80 186 -173 4 1694 544 332 193 26 chr1 145368583 145368889 -51826543 + MER47B DNA MER2_type 7 363 -3 4 1694 21 0 0 0 chr1 145369029 145369050 -51826382 + AT_rich Low_complexity Low_complexity 1 21 0 4 1694 248 194 197 22 chr1 145369140 145369218 -51826214 + RMER17D2 LTR ERVK 388 467 -342 4 1694 189 0 0 0 chr1 145369218 145369239 -51826193 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1694 248 194 197 22 chr1 145369239 145369297 -51826135 + RMER17D2 LTR ERVK 468 547 -262 4 1694 526 259 32 95 chr1 145369259 145369417 -51826015 + ID_B1 SINE B4 76 223 -1 4 1694 639 186 0 0 chr1 145369431 145369544 -51825888 - Lx7 LINE L1 -1097 6599 6487 4 1694 773 211 157 0 chr1 145369883 145370068 -51825364 + ID_B1 SINE B4 1 214 -10 4 1694 397 273 45 0 chr1 145370296 145370384 -51825048 + B4A SINE B4 6 97 -195 4 1694 519 321 7 15 chr1 145370391 145370527 -51824905 + RSINE1 SINE B4 31 165 0 4 1694 576 303 68 43 chr1 145370537 145370744 -51824688 + B4A SINE B4 81 292 0 4 1694 356 377 48 30 chr1 145371059 145371289 -51824143 + L1ME2 LINE L1 5825 6058 -106 4 1694 338 208 0 10 chr1 145374664 145374761 -51820671 + L1MA4 LINE L1 6107 6202 -98 4 1694 21 89 0 0 chr1 145375006 145375062 -51820370 + AT_rich Low_complexity Low_complexity 1 56 0 4 1694 384 22 0 0 chr1 145375134 145375179 -51820253 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1694 302 269 20 51 chr1 145375711 145375809 -51819623 + B4A SINE B4 2 96 -196 4 1694 857 209 314 4 chr1 145376044 145376283 -51819149 + RCHARR1 DNA MER1_type 485 797 -177 4 1694 248 236 128 7 chr1 145376283 145376373 -51819059 + L1M4 LINE L1 3586 3682 -2458 4 1694 261 0 0 0 chr1 145376373 145376402 -51819030 + (CAAG)n Simple_repeat Simple_repeat 1 29 0 4 1694 248 236 128 7 chr1 145376402 145376452 -51818980 + L1M4 LINE L1 3683 3742 -2398 4 1694 1722 16 0 0 chr1 145376572 145376765 -51818667 + B2_Mm1t SINE B2 1 193 0 4 1694 249 219 31 20 chr1 145376782 145376880 -51818552 + G-rich Low_complexity Low_complexity 3 101 0 4 1694 1303 164 262 23 chr1 145376920 145377174 -51818258 - RMER15 LTR ERVL -65 510 169 4 1694 218 32 0 31 chr1 145377174 145377206 -51818226 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1694 1303 164 262 23 chr1 145377206 145377294 -51818138 - RMER15 LTR ERVL -407 168 87 4 1694 810 294 50 5 chr1 145377360 145377579 -51817853 + B4A SINE B4 26 254 -38 4 1694 688 229 27 20 chr1 145377579 145377726 -51817706 + B1_Mur4 SINE Alu 1 148 -2 4 1694 241 298 53 107 chr1 145377595 145377764 -51817668 + MT2B LTR ERVL 180 339 -262 4 1694 780 174 0 0 chr1 145377764 145377919 -51817513 + GA-rich Low_complexity Low_complexity 2 156 0 5 1694 645 96 0 0 chr1 145377980 145378074 -51817358 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1694 481 276 113 34 chr1 145378157 145378536 -51816896 + L1M4 LINE L1 3851 4259 -1887 4 1694 529 335 100 4 chr1 145378662 145378923 -51816509 + B4 SINE B4 3 288 -4 5 1694 557 274 36 22 chr1 145378956 145379094 -51816338 + B3A SINE B2 1 140 -58 5 1694 225 0 0 0 chr1 145379115 145379140 -51816292 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1694 21 82 0 0 chr1 145379180 145379229 -51816203 + AT_rich Low_complexity Low_complexity 1 49 0 5 1694 1318 171 0 31 chr1 145379326 145379555 -51815877 + URR1A DNA MER1_type 3 224 -2 5 1694 185 348 97 11 chr1 145380759 145381038 -51814394 + L2 LINE L2 2780 3082 -337 5 1694 815 259 95 95 chr1 145381537 145381916 -51813516 + MTEb LTR MaLR 1 379 0 5 1694 802 213 276 33 chr1 145381963 145382227 -51813205 - MTC LTR MaLR -13 406 79 5 1694 284 239 209 33 chr1 145383033 145383124 -51812308 + B1F SINE Alu 10 116 -33 5 1694 24 0 0 0 chr1 145383143 145383167 -51812265 + AT_rich Low_complexity Low_complexity 1 24 0 5 1694 275 317 0 0 chr1 145383169 145383251 -51812181 + ID4_ SINE ID 4 85 -67 5 1694 671 288 27 62 chr1 145384551 145384810 -51810622 + MER2 DNA MER2_type 95 344 -1 5 1694 7726 55 1 0 chr1 145385422 145386545 -51808887 + L1_Mus1 LINE L1 5444 6567 0 5 1694 2355 39 3 0 chr1 145386550 145386856 -51808576 + L1_Mus2 LINE L1 5686 5992 -574 5 1694 3337 47 5 7 chr1 145386854 145387302 -51808130 + L1_Mus2 LINE L1 6120 6566 0 5 1694 342 0 0 0 chr1 145387309 145387347 -51808085 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1694 282 293 13 0 chr1 145388096 145388171 -51807261 + GA-rich Low_complexity Low_complexity 3 78 0 5 1694 186 43 0 0 chr1 145388940 145388963 -51806469 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1694 216 0 0 0 chr1 145390262 145390286 -51805146 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1694 873 241 60 36 chr1 145390448 145390780 -51804652 + L1MC1 LINE L1 5932 6271 -62 5 1694 712 320 203 59 chr1 145391196 145391674 -51803758 + MT2A LTR ERVL 6 552 -2 5 1694 19170 16 2 0 chr1 145392393 145394713 -51800719 + L1Md_T LINE L1 3264 5586 -297 5 1694 8461 33 0 0 chr1 145394713 145395709 -51799723 + L1Md_T LINE L1 5587 6582 0 5 1694 352 316 63 0 chr1 145395837 145395995 -51799437 + MIRb SINE MIR 73 240 -28 5 1694 6614 45 11 1 chr1 145396666 145397466 -51797966 + RLTR13C2 LTR ERVK 1 808 0 5 1694 1737 135 22 4 chr1 145398669 145398944 -51796488 - Lx LINE L1 -466 6188 5909 5 1694 2320 185 7 4 chr1 145398944 145399395 -51796037 + Lx LINE L1 6198 6649 -5 5 1694 389 294 28 49 chr1 145399470 145399613 -51795819 - B4 SINE B4 -152 140 1 5 1694 592 305 119 34 chr1 145399671 145400173 -51795259 - L1ME2 LINE L1 -66 6098 5554 5 1694 212 281 53 0 chr1 145400566 145400623 -51794809 + L2c LINE L2 3272 3331 -56 5 1694 636 14 0 0 chr1 145401602 145401675 -51793757 + (TCTCCC)n Simple_repeat Simple_repeat 3 75 0 5 1694 280 356 11 0 chr1 145401680 145401770 -51793662 - MER58A DNA MER1_type -65 159 69 5 1694 383 273 11 11 chr1 145402035 145402124 -51793308 - PB1D10 SINE Alu -26 91 3 5 1694 348 244 10 72 chr1 145402124 145402150 -51793282 - ID SINE ID -141 83 64 5 1694 351 0 0 0 chr1 145402177 145402216 -51793216 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1694 240 300 30 31 chr1 145402216 145402408 -51793024 + L1MCa LINE L1 36 403 -6348 5 1694 960 169 111 29 chr1 145402461 145402668 -51792764 + URR1A DNA MER1_type 3 226 0 5 1694 1607 132 3 71 chr1 145402930 145403239 -51792193 + Lx4A LINE L1 6771 7058 0 5 1694 839 278 139 8 chr1 145403298 145403838 -51791594 - L1MCa LINE L1 -779 5729 5125 5 1694 254 232 0 0 chr1 145404122 145404178 -51791254 - L1MCa LINE L1 -1200 5121 5066 5 1694 1131 292 91 89 chr1 145404222 145405285 -51790147 - L1MCa LINE L1 -5438 1070 6 5 1694 437 310 18 7 chr1 145405790 145405921 -51789511 - B1_Mur4 SINE Alu -12 138 10 5 1694 342 169 109 8 chr1 145405953 145406072 -51789360 - Lx9 LINE L1 -1 7643 7513 5 1694 557 94 12 0 chr1 145406074 145406159 -51789273 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1694 425 268 43 56 chr1 145406806 145406968 -51788464 - MER46C DNA MER2_type -71 267 108 5 1694 399 270 197 35 chr1 145407938 145407987 -51787445 - Lx8 LINE L1 -1 7472 7422 5 1694 231 61 0 0 chr1 145407987 145408020 -51787412 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1694 399 270 197 35 chr1 145408020 145408254 -51787178 - Lx8 LINE L1 -52 7421 7143 5 1694 590 265 77 11 chr1 145408453 145408636 -51786796 + RMER15 LTR ERVL 381 575 0 5 1694 3007 169 53 30 chr1 145409528 145410219 -51785213 - Lx9 LINE L1 -2 7642 6936 5 1694 453 321 135 26 chr1 145410259 145410489 -51784943 - LFSINE_Vert SINE SINE -116 343 89 5 1694 259 291 93 16 chr1 145410493 145410675 -51784757 + RMER17C LTR ERVK 35 230 -180 5 1694 690 24 0 0 chr1 145410675 145410759 -51784673 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1694 676 314 14 38 chr1 145410787 145411075 -51784357 - B4A SINE B4 -7 285 5 5 1694 207 0 0 0 chr1 145411094 145411117 -51784315 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1694 1210 206 47 20 chr1 145411146 145411443 -51783989 + L1_Rod LINE L1 5380 5684 -163 5 1694 189 0 0 0 chr1 145412517 145412538 -51782894 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1694 314 250 45 15 chr1 145414186 145414320 -51781112 + L1M2 LINE L1 5347 5484 -816 5 1694 522 225 135 21 chr1 145414326 145414467 -51780965 + RSINE1 SINE B4 3 159 -6 5 1694 315 305 178 13 chr1 145414528 145414654 -51780778 + L1MA5 LINE L1 5462 5616 -264 5 1694 333 0 0 0 chr1 145414654 145414691 -51780741 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1694 345 280 144 8 chr1 145414691 145414873 -51780559 + L1MA5 LINE L1 5617 5858 -442 5 1694 290 322 89 0 chr1 145415222 145415312 -51780120 - RSINE1 SINE B4 0 165 68 5 1694 261 43 0 60 chr1 145415338 145415388 -51780044 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1694 693 219 0 0 chr1 145415388 145415525 -51779907 - B1_Mur1 SINE Alu -11 138 2 5 1694 4841 146 24 111 chr1 145416397 145416602 -51778830 + Lx2 LINE L1 4820 5015 -862 5 1694 1147 63 0 7 chr1 145416602 145416745 -51778687 + B1_Mus2 SINE Alu 1 142 -5 5 1694 7292 138 32 81 chr1 145416745 145418858 -51776574 + Lx2 LINE L1 5016 6997 0 5 1694 21 0 0 0 chr1 145418899 145418920 -51776512 + AT_rich Low_complexity Low_complexity 1 21 0 5 1694 472 275 91 8 chr1 145419093 145419225 -51776207 - B1F2 SINE Alu -5 144 2 5 1694 375 23 0 0 chr1 145419386 145419430 -51776002 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1694 851 259 0 66 chr1 145419741 145419939 -51775493 + B3A SINE B2 1 185 -13 5 1694 1234 34 7 0 chr1 145419970 145420116 -51775316 - B1_Mus1 SINE Alu 0 148 2 5 1694 684 274 45 5 chr1 145420196 145420416 -51775016 + L1MA5 LINE L1 6072 6300 0 5 1694 672 114 9 0 chr1 145420620 145420734 -51774698 + Lx2A1 LINE L1 6883 6997 -11 5 1694 485 71 14 0 chr1 145420737 145420807 -51774625 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1694 735 71 0 0 chr1 145420814 145420912 -51774520 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 5 1694 707 260 6 13 chr1 145420912 145421060 -51774372 + RSINE1 SINE B4 18 165 0 5 1694 264 231 118 44 chr1 145421114 145421250 -51774182 + L1MC4 LINE L1 7481 7626 -416 5 1694 487 231 111 0 chr1 145421737 145421845 -51773587 + B3A SINE B2 61 180 -18 5 1694 1876 152 21 96 chr1 145421846 145422236 -51773196 - ORR1B1 LTR MaLR 0 394 1 5 1694 241 322 11 22 chr1 145422500 145422589 -51772843 + Lx8 LINE L1 7113 7200 -273 5 1694 216 200 0 0 chr1 145422610 145422660 -51772772 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1694 344 309 138 5 chr1 145423181 145423405 -51772027 + L1MB1 LINE L1 5683 5936 -232 5 1694 296 193 53 64 chr1 145424894 145424988 -51770444 - Lx6 LINE L1 -628 6832 6740 5 1694 6920 75 40 6 chr1 145424978 145425993 -51769439 - L1_Mus4 LINE L1 0 6636 5587 5 1694 17386 57 2 6 chr1 145426024 145428225 -51767207 - L1Md_F2 LINE L1 0 6582 4390 5 1694 2479 24 3 0 chr1 145428225 145428516 -51766916 - L1Md_A LINE L1 -1 6581 6290 5 1694 17386 57 2 9 chr1 145428516 145429361 -51766071 - L1Md_F2 LINE L1 -1494 4389 3552 5 1694 2224 149 23 3 chr1 145429363 145429777 -51765655 - L1Md_F LINE L1 -5969 553 101 5 1694 1049 161 11 0 chr1 145429826 145430006 -51765426 - Lx6 LINE L1 -724 6736 6555 5 1694 2716 172 40 14 chr1 145430033 145430810 -51764622 - Lx6 LINE L1 -1311 6149 5344 5 1694 2770 79 0 90 chr1 145430808 145430903 -51764529 - L1_Mm LINE L1 -117 5766 5710 5 1694 3461 54 0 0 chr1 145430903 145431326 -51764106 - L1_Mus1 LINE L1 0 6567 6145 5 1694 2770 79 0 90 chr1 145431326 145431676 -51763756 - L1_Mm LINE L1 -174 5709 5361 5 1694 2830 167 18 2 chr1 145431682 145432253 -51763179 - L1_Mur3 LINE L1 -3844 2036 1457 5 1694 220 322 106 11 chr1 145432264 145432358 -51763074 + L2b LINE L2 3261 3363 -12 5 1694 24 32 0 0 chr1 145432410 145432441 -51762991 + AT_rich Low_complexity Low_complexity 1 31 0 5 1694 227 351 40 0 chr1 145433315 145433389 -51762043 - B4A SINE B4 0 292 216 5 1694 956 156 0 6 chr1 145433510 145433691 -51761741 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1694 429 20 0 0 chr1 145433768 145433818 -51761614 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1694 227 250 61 71 chr1 145433861 145433960 -51761472 - Lx9 LINE L1 -208 7436 7339 5 1694 1972 167 59 8 chr1 145434010 145434385 -51761047 + ORR1B1 LTR MaLR 1 394 0 5 1694 790 316 78 7 chr1 145434399 145434807 -51760625 - Lx9 LINE L1 -400 7244 6808 5 1694 344 296 0 113 chr1 145434838 145434934 -51760498 - Lx9 LINE L1 -1180 6464 6381 5 1694 4162 33 0 0 chr1 145434934 145435418 -51760014 - L1Md_T LINE L1 -1 6581 6098 5 1694 344 296 0 113 chr1 145435418 145435462 -51759970 - Lx9 LINE L1 -1264 6380 6340 5 1694 430 285 84 8 chr1 145435748 145435879 -51759553 - B4A SINE B4 -151 141 1 5 1694 338 173 69 69 chr1 145436200 145436287 -51759145 + RSINE1 SINE B4 3 89 -76 5 1694 266 344 108 31 chr1 145437153 145437348 -51758084 + LTR78 LTR ERV1 671 880 -424 5 1694 1024 295 72 17 chr1 145437856 145438204 -51757228 + MLT1B LTR MaLR 23 389 -1 5 1694 376 295 27 54 chr1 145439692 145439803 -51755629 + PB1D10 SINE Alu 10 117 0 5 1694 588 314 6 39 chr1 145439929 145440108 -51755324 - B3A SINE B2 -16 182 10 5 1694 758 206 64 64 chr1 145440085 145440128 -51755304 - URR1B DNA MER1_type -30 195 163 5 1694 2902 48 3 17 chr1 145440128 145440490 -51754942 + IAPEY2_LTR LTR ERVK 1 357 0 5 1694 758 206 64 64 chr1 145440490 145440633 -51754799 - URR1B DNA MER1_type -63 162 9 5 1694 512 147 17 0 chr1 145440746 145440862 -51754570 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 6 1694 271 298 63 16 chr1 145441113 145441239 -51754193 - Tigger6a DNA MER2_type -3 1080 949 6 1694 235 162 89 111 chr1 145441307 145441397 -51754035 - Tigger6a DNA MER2_type -318 765 678 6 1694 8077 46 4 1 chr1 145441406 145443161 -51752271 - L1Md_F2 LINE L1 -15 6567 4807 6 1694 454 50 0 0 chr1 145443159 145443219 -51752213 + L1_Mm LINE L1 4364 4423 -1460 6 1694 299 289 292 5 chr1 145443219 145443414 -51752018 - Tigger6a DNA MER2_type -387 696 446 6 1694 293 205 48 111 chr1 145443708 145443834 -51751598 + RLTR23 LTR ERV1 244 361 -69 6 1694 961 278 112 20 chr1 145443849 145444205 -51751227 - Tigger6a DNA MER2_type -611 472 84 6 1694 326 234 37 55 chr1 145444258 145444421 -51751011 + L1MD2 LINE L1 5267 5426 -933 6 1694 424 309 144 39 chr1 145444433 145445045 -51750387 + L1MD2 LINE L1 5485 6160 -199 6 1694 267 336 8 16 chr1 145445170 145445291 -51750141 - PB1D7 SINE Alu 0 120 1 6 1694 406 266 112 53 chr1 145445639 145445996 -51749436 + MTEb LTR MaLR 2 379 0 6 1694 339 327 154 19 chr1 145446004 145446160 -51749272 + Charlie7 DNA MER1_type 5 181 -2431 6 1694 348 262 84 39 chr1 145446389 145446568 -51748864 + Charlie7 DNA MER1_type 1783 1969 -643 6 1694 220 364 45 23 chr1 145447012 145447144 -51748288 + L2a LINE L2 2407 2541 -878 6 1694 260 385 70 13 chr1 145447281 145447439 -51747993 + L2a LINE L2 2945 3111 -315 6 1694 237 311 68 0 chr1 145447495 145447569 -51747863 + ID4 SINE ID 2 80 -3 6 1694 417 20 0 0 chr1 145450890 145450940 -51744492 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1694 25 0 0 0 chr1 145455728 145455753 -51739679 + AT_rich Low_complexity Low_complexity 1 25 0 6 1694 23 33 0 0 chr1 145456424 145456454 -51738978 + AT_rich Low_complexity Low_complexity 1 30 0 6 1694 1035 299 102 38 chr1 145456879 145457189 -51738243 + MTD LTR MaLR 2 334 -85 6 1694 2415 106 53 2 chr1 145457189 145457587 -51737845 + L1_Mus4 LINE L1 6217 6634 -2 6 1694 1035 299 102 38 chr1 145457587 145457669 -51737763 + MTD LTR MaLR 335 419 0 6 1694 274 352 62 31 chr1 145457740 145457869 -51737563 - L2a LINE L2 -27 3399 3267 6 1694 437 280 0 24 chr1 145457881 145458005 -51737427 - B1F SINE Alu 0 120 1 6 1694 28 61 0 0 chr1 145458227 145458276 -51737156 + AT_rich Low_complexity Low_complexity 1 49 0 6 1694 620 303 112 19 chr1 145458364 145458572 -51736860 + B4A SINE B4 1 228 -64 6 1694 308 301 32 11 chr1 145458572 145458666 -51736766 + RSINE1 SINE B4 2 97 -68 6 1694 814 233 5 28 chr1 145459470 145459686 -51735746 + B3 SINE B2 2 212 -4 6 1694 955 299 26 76 chr1 145460089 145460510 -51734922 + MTE2a LTR MaLR 1 417 -2 6 1694 222 237 0 33 chr1 145460767 145460828 -51734604 + B1_Mus2 SINE Alu 89 147 0 6 1694 185 159 23 0 chr1 145460828 145460872 -51734560 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 6 1694 225 247 0 0 chr1 145460945 145461018 -51734414 + A-rich Low_complexity Low_complexity 1 73 0 6 1694 193 250 0 77 chr1 145461035 145461113 -51734319 - L2 LINE L2 -1293 2126 2055 6 1694 21 36 0 0 chr1 145461564 145461592 -51733840 + AT_rich Low_complexity Low_complexity 1 28 0 6 1694 271 293 95 48 chr1 145461757 145461904 -51733528 + L2a LINE L2 3265 3418 -8 6 1694 256 267 48 65 chr1 145463291 145463415 -51732017 - MIR SINE MIR -21 241 120 6 1694 243 246 14 0 chr1 145463789 145463858 -51731574 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1694 23 0 0 0 chr1 145464008 145464031 -51731401 + AT_rich Low_complexity Low_complexity 1 23 0 6 1694 24 53 0 0 chr1 145464158 145464196 -51731236 + AT_rich Low_complexity Low_complexity 1 38 0 6 1694 423 280 84 0 chr1 145464196 145464339 -51731093 + RSINE1 SINE B4 3 157 -8 6 1694 23 33 0 0 chr1 145464627 145464657 -51730775 + AT_rich Low_complexity Low_complexity 1 30 0 6 1694 317 268 194 42 chr1 145465160 145465484 -51729948 + MTEa LTR MaLR 1 357 -2 6 1694 22 70 0 0 chr1 145465502 145465545 -51729887 + AT_rich Low_complexity Low_complexity 1 43 0 6 1694 22 56 0 0 chr1 145466293 145466329 -51729103 + AT_rich Low_complexity Low_complexity 1 36 0 6 1694 198 0 0 0 chr1 145466333 145466355 -51729077 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1694 372 94 0 0 chr1 145466451 145466504 -51728928 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1694 280 0 50 0 chr1 145467484 145467524 -51727908 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1694 231 323 83 0 chr1 145469577 145469673 -51725759 - MamRep605 Unknown Unknown -127 749 646 6 1694 1370 68 5 20 chr1 145470112 145470307 -51725125 + B2_Mm2 SINE B2 2 193 -2 6 1694 312 188 0 0 chr1 145470608 145470672 -51724760 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 6 1694 277 299 66 77 chr1 145470929 145471110 -51724322 - RLTR25A LTR ERVK 0 1028 850 6 1694 189 0 0 0 chr1 145471738 145471759 -51723673 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1694 394 314 74 102 chr1 145471980 145472303 -51723129 - RLTR25A LTR ERVK -789 314 1 6 1694 796 192 43 0 chr1 145473105 145473266 -51722166 - URR1B DNA MER1_type -5 220 53 6 1694 310 229 0 35 chr1 145473366 145473452 -51721980 + L1_Mur3 LINE L1 750 832 -6896 6 1694 1515 264 88 9 chr1 145473623 145474077 -51721355 + Lx7 LINE L1 6919 7408 -288 6 1694 594 0 0 0 chr1 145474209 145474275 -51721157 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1694 302 147 0 29 chr1 145474301 145474371 -51721061 + Lx9 LINE L1 7577 7644 0 6 1694 657 161 145 0 chr1 145474444 145474568 -51720864 + B1_Mus1 SINE Alu 6 147 -1 6 1694 198 0 0 0 chr1 145475047 145475069 -51720363 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1694 753 180 14 28 chr1 145475740 145475883 -51719549 + B1_Mur4 SINE Alu 1 141 -9 6 1694 237 316 96 54 chr1 145475939 145476200 -51719232 + L1MC3 LINE L1 6151 6422 -1363 6 1694 372 309 48 38 chr1 145476251 145476460 -51718972 + L1_Mur3 LINE L1 5188 5398 -482 6 1694 405 303 91 0 chr1 145476508 145476640 -51718792 + RSINE1 SINE B4 3 146 -19 6 1694 828 80 0 0 chr1 145476692 145476805 -51718627 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 6 1694 304 258 184 30 chr1 145476807 145476975 -51718457 + L1M4 LINE L1 5477 5670 -514 6 1694 637 324 34 54 chr1 145477034 145477331 -51718101 + B4A SINE B4 2 292 0 6 1694 270 218 34 0 chr1 145477340 145477409 -51718023 + L1MA5 LINE L1 5868 5938 -374 6 1694 1012 51 15 0 chr1 145477720 145477857 -51717575 + B2_Mm1t SINE B2 54 192 -1 6 1694 385 285 84 8 chr1 145477903 145478034 -51717398 + B1_Mur2 SINE Alu 1 141 -8 6 1694 45 34 0 0 chr1 145478034 145478093 -51717339 + AT_rich Low_complexity Low_complexity 1 59 0 6 1694 3764 197 122 67 chr1 145478634 145479685 -51715747 + RLTR21 LTR ERVK 8 1102 -470 6 1694 429 20 0 0 chr1 145479885 145479935 -51715497 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 6 1694 418 325 19 31 chr1 145480148 145480307 -51715125 + RSINE1 SINE B4 3 159 -6 6 1694 921 255 145 18 chr1 145480335 145480618 -51714814 - ORR1E LTR MaLR -40 319 1 6 1694 255 31 0 0 chr1 145480637 145480669 -51714763 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1694 204 206 0 0 chr1 145480949 145480983 -51714449 + polypyrimidine Low_complexity Low_complexity 2 35 0 6 1694 1319 299 30 16 chr1 145481443 145481826 -51713606 + MTE2b LTR MaLR 24 395 -24 6 1694 22 35 0 0 chr1 145481860 145481889 -51713543 + AT_rich Low_complexity Low_complexity 1 29 0 6 1694 23 54 0 0 chr1 145482123 145482160 -51713272 + AT_rich Low_complexity Low_complexity 1 37 0 6 1694 37 0 0 0 chr1 145482346 145482383 -51713049 + AT_rich Low_complexity Low_complexity 1 37 0 6 1694 473 248 10 0 chr1 145482383 145482484 -51712948 + B1F SINE Alu 41 142 -7 6 1694 1034 132 425 0 chr1 145482916 145483144 -51712288 + ORR1A4 LTR MaLR 2 326 -3 6 1694 4816 178 9 108 chr1 145483147 145484291 -51711141 + ORR1A4-int LTR MaLR 1 1030 -933 6 1694 1154 61 0 0 chr1 145485138 145485286 -51710146 + B1_Mus1 SINE Alu 1 148 0 6 1694 356 208 112 9 chr1 145485628 145485735 -51709697 + L1MA5 LINE L1 6183 6300 0 6 1694 185 298 17 17 chr1 145486217 145486275 -51709157 + MIRm SINE MIR 118 175 -101 6 1694 1335 6 0 0 chr1 145489318 145489475 -51705957 + L1Md_A LINE L1 6426 6582 0 6 211 21 0 0 0 chr1 145489903 145489924 -51705508 + AT_rich Low_complexity Low_complexity 1 21 0 6 1695 312 161 0 0 chr1 145491372 145491434 -51703998 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1695 21 0 0 0 chr1 145491910 145491931 -51703501 + AT_rich Low_complexity Low_complexity 1 21 0 6 1695 291 28 0 0 chr1 145491945 145491981 -51703451 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1695 189 0 0 0 chr1 145491988 145492009 -51703423 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1695 36 23 0 0 chr1 145495072 145495115 -51700317 + AT_rich Low_complexity Low_complexity 1 43 0 6 1695 267 315 64 21 chr1 145496554 145496648 -51698784 + PB1D10 SINE Alu 16 113 -4 6 1695 215 345 83 33 chr1 145496648 145496674 -51698758 + ID_B1 SINE B4 97 222 -2 6 1695 24 53 0 0 chr1 145496682 145496720 -51698712 + AT_rich Low_complexity Low_complexity 1 38 0 6 1695 21 0 0 0 chr1 145497066 145497087 -51698345 + AT_rich Low_complexity Low_complexity 1 21 0 6 1695 616 203 69 42 chr1 145497709 145497853 -51697579 + B1_Mur1 SINE Alu 1 148 -1 6 1695 390 276 10 20 chr1 145497875 145497975 -51697457 + RSINE1 SINE B4 66 164 -1 6 1695 314 330 41 57 chr1 145498211 145498333 -51697099 + PB1 SINE Alu 1 120 -7 6 1695 675 201 139 12 chr1 145498579 145498745 -51696687 - B3 SINE B2 -5 211 25 6 1695 511 293 0 31 chr1 145498981 145499108 -51696324 + B1_Mur2 SINE Alu 22 144 -5 6 1695 302 354 122 19 chr1 145499245 145499458 -51695974 + L1MC4a LINE L1 6721 6955 -927 6 1695 31 0 0 0 chr1 145499555 145499586 -51695846 + AT_rich Low_complexity Low_complexity 1 31 0 6 1695 201 289 0 0 chr1 145499778 145499830 -51695602 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1695 227 254 164 0 chr1 145500130 145500197 -51695235 + B1_Mur3 SINE Alu 7 84 -65 1 1695 201 74 0 0 chr1 145500213 145500240 -51695192 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1695 227 237 0 0 chr1 145500760 145500798 -51694634 - B1_Mur2 SINE Alu -102 47 10 3 1695 296 172 86 0 chr1 145502922 145502980 -51692452 - ID4_ SINE ID -9 74 12 4 1695 296 343 30 0 chr1 145503006 145503105 -51692327 - PB1D10 SINE Alu -13 104 3 5 1695 402 100 0 0 chr1 145503360 145503420 -51692012 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1695 771 262 20 15 chr1 145504220 145504418 -51691014 - B3 SINE B2 -17 199 1 7 1695 3674 43 0 2 chr1 145504499 145504969 -51690463 + L1_Mus1 LINE L1 6115 6567 0 8 1695 374 39 0 0 chr1 145504969 145505020 -51690412 + L1Md_F2 LINE L1 6502 6552 -30 9 1695 441 0 0 0 chr1 145505020 145505069 -51690363 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1 1695 205 178 0 0 chr1 145505580 145505625 -51689807 + A-rich Low_complexity Low_complexity 1 45 0 1 1695 1108 68 0 27 chr1 145505701 145505851 -51689581 + B1_Mus2 SINE Alu 2 147 0 1 1695 232 222 0 31 chr1 145505907 145505972 -51689460 + A-rich Low_complexity Low_complexity 2 64 0 1 1695 34 55 0 0 chr1 145506121 145506176 -51689256 + AT_rich Low_complexity Low_complexity 1 55 0 1 1695 427 196 40 71 chr1 145506245 145506344 -51689088 + B3 SINE B2 3 98 -118 1 1695 21 0 0 0 chr1 145506500 145506521 -51688911 + AT_rich Low_complexity Low_complexity 1 21 0 1 1695 1369 80 5 0 chr1 145507816 145508003 -51687429 + B2_Mm1t SINE B2 3 190 -3 1 1695 660 237 21 7 chr1 145508234 145508374 -51687058 + B1_Mur2 SINE Alu 8 149 0 1 1695 350 279 153 25 chr1 145508682 145508796 -51686636 - B1F2 SINE Alu -11 138 7 1 1695 1813 154 16 13 chr1 145509101 145509411 -51686021 - L1_Mur2 LINE L1 -196 5681 5371 2 1695 3127 174 61 43 chr1 145509411 145510137 -51685295 + Lx4B LINE L1 6223 7053 -5 2 1695 1158 62 0 0 chr1 145510206 145510351 -51685081 + B1_Mus1 SINE Alu 4 148 0 2 1695 617 244 29 29 chr1 145510628 145510767 -51684665 + B1_Mur1 SINE Alu 9 147 -2 2 1695 674 251 66 0 chr1 145510862 145511029 -51684403 - B3A SINE B2 -19 179 2 2 1695 767 143 0 75 chr1 145511578 145511737 -51683695 + B1_Mur3 SINE Alu 1 147 -2 2 1695 369 0 0 0 chr1 145511840 145511881 -51683551 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1695 333 0 0 0 chr1 145511881 145511917 -51683515 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1695 3930 140 82 93 chr1 145511961 145512877 -51682555 + RMER17A2 LTR ERVK 1 906 0 2 1695 795 179 57 0 chr1 145513106 145513246 -51682186 + B1_Mur1 SINE Alu 1 148 -1 2 1695 189 148 174 12 chr1 145513495 145513559 -51681873 + L2c LINE L2 3337 3422 -4 3 1695 189 0 0 0 chr1 145513985 145514006 -51681426 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1695 214 339 65 0 chr1 145514015 145514077 -51681355 + PB1 SINE Alu 21 86 -41 3 1695 286 224 47 12 chr1 145514151 145514237 -51681195 + A-rich Low_complexity Low_complexity 4 92 0 3 1695 360 0 0 0 chr1 145515044 145515084 -51680348 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1695 575 259 55 31 chr1 145515155 145515318 -51680114 + B3 SINE B2 50 216 0 3 1695 362 79 67 11 chr1 145515527 145515617 -51679815 + CT-rich Low_complexity Low_complexity 2 96 0 3 1695 225 250 127 38 chr1 145516727 145516806 -51678626 - MER58B DNA MER1_type -1 340 255 3 1695 425 125 458 0 chr1 145516912 145517032 -51678400 - B2_Mm2 SINE B2 -19 176 2 3 1695 599 165 15 110 chr1 145517408 145517544 -51677888 + B1_Mur3 SINE Alu 27 149 0 3 1695 302 102 61 0 chr1 145517688 145517737 -51677695 + B1_Mm SINE Alu 87 138 -9 4 1695 281 366 45 19 chr1 145518022 145518178 -51677254 + Helitron3Na_Mam RC Helitron 134 293 -193 4 1695 245 314 78 0 chr1 145518678 145518780 -51676652 + ORR1E LTR MaLR 1 110 -249 4 1695 379 386 12 37 chr1 145519639 145519803 -51675629 + RSINE1 SINE B4 2 161 -4 4 1695 348 111 0 0 chr1 145519842 145519896 -51675536 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1695 657 282 103 0 chr1 145519927 145520122 -51675310 + B3 SINE B2 1 215 -1 4 1695 1061 265 168 37 chr1 145520497 145521124 -51674308 - Charlie1a DNA MER1_type -20 1435 727 4 1695 344 134 356 10 chr1 145521124 145521228 -51674204 - B2_Mm2 SINE B2 -9 186 47 4 1695 831 111 16 0 chr1 145521251 145521377 -51674055 - B2_Mm1a SINE B2 -65 128 1 4 1695 292 249 272 17 chr1 145521394 145521574 -51673858 - Charlie1a DNA MER1_type -711 744 519 4 1695 505 283 51 46 chr1 145521710 145521906 -51673526 - Charlie1a DNA MER1_type -1167 288 92 4 1695 662 288 84 102 chr1 145522077 145522448 -51672984 + MLT1A0 LTR MaLR 1 364 -1 4 1695 325 154 61 15 chr1 145522468 145522534 -51672898 + MLT1A0 LTR MaLR 297 365 0 5 1695 488 211 101 0 chr1 145522703 145522812 -51672620 + RSINE1 SINE B4 38 157 -8 5 1695 26 30 0 0 chr1 145523105 145523138 -51672294 + AT_rich Low_complexity Low_complexity 1 33 0 5 1695 24 32 0 0 chr1 145523159 145523190 -51672242 + AT_rich Low_complexity Low_complexity 1 31 0 5 1695 566 213 0 151 chr1 145523190 145523356 -51672076 + B1_Mur3 SINE Alu 1 141 -8 5 1695 297 351 60 17 chr1 145523547 145523663 -51671769 - RSINE1 SINE B4 -2 163 43 5 1695 370 311 65 13 chr1 145523741 145523894 -51671538 - RSINE1 SINE B4 -1 164 4 5 1695 186 43 0 0 chr1 145523909 145523932 -51671500 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1695 1199 36 0 0 chr1 145523941 145524081 -51671351 - B1_Mus2 SINE Alu -7 140 1 5 1695 876 295 0 0 chr1 145525211 145525411 -51670021 - B3 SINE B2 -15 201 2 5 1695 1066 199 24 9 chr1 145526120 145526333 -51669099 + B3 SINE B2 1 216 0 6 1695 25 0 0 0 chr1 145526381 145526406 -51669026 + AT_rich Low_complexity Low_complexity 1 25 0 6 1695 311 306 143 16 chr1 145526488 145526614 -51668818 + HAL1-3A_ME LINE L1 2284 2425 -433 6 1695 1293 57 85 0 chr1 145527197 145527355 -51668077 + B2_Mm1t SINE B2 2 160 -33 6 1695 243 0 0 0 chr1 145527355 145527382 -51668050 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1695 1293 57 85 0 chr1 145527382 145527400 -51668032 + B2_Mm1t SINE B2 161 191 -2 6 1695 493 252 11 97 chr1 145528295 145528471 -51666961 - RSINE1 SINE B4 -2 163 3 6 1695 562 316 72 4 chr1 145528495 145528730 -51666702 + L1MEc LINE L1 31 281 -6119 6 1695 716 207 20 27 chr1 145529088 145529237 -51666195 + B1_Mur4 SINE Alu 3 150 0 6 1695 795 336 201 55 chr1 145529524 145530301 -51665131 + MTE-int LTR MaLR 42 931 -649 6 1695 438 313 0 0 chr1 145531021 145531171 -51664261 + (TGG)n Simple_repeat Simple_repeat 1 150 0 6 1695 3969 84 5 24 chr1 145531220 145531814 -51663618 + RLTR19-int LTR ERVK 1430 2012 -4125 7 1695 213 39 0 0 chr1 145531817 145531843 -51663589 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1695 1345 335 96 43 chr1 145531845 145532420 -51663012 + MTE-int LTR MaLR 926 1530 -50 6 1695 360 301 51 29 chr1 145532436 145532573 -51662859 + ORR1E LTR MaLR 40 179 -180 7 1695 505 244 156 0 chr1 145532785 145532920 -51662512 + MER2 DNA MER2_type 190 345 0 7 1695 324 0 0 0 chr1 145533145 145533181 -51662251 + (TAA)n Simple_repeat Simple_repeat 2 37 0 7 1695 930 80 43 21 chr1 145533252 145533393 -51662039 + B1_Mus1 SINE Alu 1 144 -4 7 1695 204 67 0 0 chr1 145533397 145533427 -51662005 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7 1695 699 222 211 24 chr1 145533518 145533562 -51661870 - Tigger5 DNA MER2_type -2 2404 2364 7 1695 2428 165 22 10 chr1 145533562 145533978 -51661454 + MTC LTR MaLR 1 421 0 7 1695 699 222 211 24 chr1 145533978 145534141 -51661291 - Tigger5 DNA MER2_type -43 2363 2158 7 1695 185 35 69 0 chr1 145534299 145534328 -51661104 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 7 1695 430 276 240 6 chr1 145534351 145534526 -51660906 - B3 SINE B2 0 216 1 8 1695 233 257 99 86 chr1 145534762 145534843 -51660589 + B1F SINE Alu 5 86 -63 8 1695 2287 179 62 54 chr1 145535546 145535637 -51659795 + RMER6A LTR ERVK 1 118 -638 8 1695 637 151 0 131 chr1 145535637 145535759 -51659673 + MT2B LTR ERVL 181 286 -315 8 1695 2287 179 62 54 chr1 145535759 145536240 -51659192 + RMER6A LTR ERVK 119 749 -7 8 1695 187 328 0 0 chr1 145536263 145536324 -51659108 + MIR SINE MIR 164 224 -38 8 1695 235 308 77 0 chr1 145537382 145537460 -51657972 + MTE2a LTR MaLR 282 365 -14 8 1695 1351 40 97 0 chr1 145538004 145538179 -51657253 - B2_Mm1t SINE B2 0 193 2 8 1695 772 151 8 8 chr1 145538200 145538327 -51657105 - B1_Mur4 SINE Alu -22 128 2 8 1695 25 31 0 0 chr1 145538360 145538392 -51657040 + AT_rich Low_complexity Low_complexity 1 32 0 8 1695 4377 37 40 6 chr1 145539067 145539610 -51655822 + L1Md_F2 LINE L1 6021 6582 0 8 1695 302 348 171 59 chr1 145539611 145540139 -51655293 - L2 LINE L2 -457 2962 2376 9 1695 676 284 121 48 chr1 145540163 145540643 -51654789 - Tigger2b DNA MER2_type 0 726 212 9 1695 931 97 165 29 chr1 145540662 145540832 -51654600 + B2_Mm2 SINE B2 2 194 -1 9 1695 1162 68 0 0 chr1 145540834 145540980 -51654452 + B1_Mus2 SINE Alu 1 146 -1 9 1695 1538 216 91 53 chr1 145541291 145541499 -51653933 + MTD LTR MaLR 1 210 -209 9 1695 1050 75 0 0 chr1 145541499 145541633 -51653799 + B1_Mus2 SINE Alu 1 134 -13 9 1695 537 44 0 0 chr1 145541634 145541702 -51653730 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 9 1695 1538 216 91 53 chr1 145541702 145541887 -51653545 + MTD LTR MaLR 211 411 -8 9 1695 931 57 89 0 chr1 145543082 145543206 -51652226 + B1_Mus2 SINE Alu 1 135 -12 9 1695 270 0 0 0 chr1 145543209 145543239 -51652193 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 1695 741 243 25 73 chr1 145543445 145543649 -51651783 + B3A SINE B2 1 194 -4 9 1695 181 83 56 0 chr1 145543995 145544031 -51651401 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1695 752 219 0 14 chr1 145544156 145544304 -51651128 - B1_Mur4 SINE Alu 0 150 5 1 1695 257 271 42 141 chr1 145544632 145544662 -51650770 + MT2B LTR ERVL 137 152 -449 1 1695 709 131 56 24 chr1 145544662 145544787 -51650645 + B1_Mur4 SINE Alu 2 130 -20 1 1695 405 54 0 0 chr1 145544794 145544850 -51650582 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1695 663 241 28 17 chr1 145545418 145545595 -51649837 + ID_B1 SINE B4 27 205 -19 1 1695 684 104 0 3 chr1 145545766 145545878 -51649554 - B1_Mm SINE Alu 0 148 39 1 1695 243 0 0 0 chr1 145546693 145546720 -51648712 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1695 370 266 271 44 chr1 145546734 145546915 -51648517 - ID_B1 SINE B4 -2 222 1 1 1695 1249 20 0 0 chr1 145547151 145547297 -51648135 + B1_Mm SINE Alu 2 147 0 1 1695 213 65 0 0 chr1 145547297 145547328 -51648104 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1695 1055 171 65 32 chr1 145547589 145547806 -51647626 - URR1B DNA MER1_type -1 224 1 1 1695 1020 69 53 0 chr1 145548369 145548500 -51646932 + B1_Mus2 SINE Alu 1 138 -9 1 1695 207 0 0 0 chr1 145548500 145548523 -51646909 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1695 253 171 26 26 chr1 145549766 145549880 -51645552 + (CCG)n Simple_repeat Simple_repeat 3 116 0 1 1695 31 44 0 0 chr1 145550026 145550071 -51645361 + GC_rich Low_complexity Low_complexity 1 45 0 1 1695 21 0 0 0 chr1 145550090 145550111 -51645321 + GC_rich Low_complexity Low_complexity 1 21 0 1 1695 1128 55 0 14 chr1 145551709 145551857 -51643575 + B1_Mus1 SINE Alu 2 147 -1 1 1695 3770 177 103 13 chr1 145551906 145552565 -51642867 + Lx9 LINE L1 6748 7435 -209 1 1695 494 16 16 0 chr1 145552565 145552628 -51642804 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1695 3770 177 103 13 chr1 145552628 145552791 -51642641 + Lx9 LINE L1 7436 7643 -1 1 1695 868 302 34 14 chr1 145553098 145553447 -51641985 - L1MC1 LINE L1 -479 6029 5674 1 1695 599 71 12 0 chr1 145553501 145553586 -51641846 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1695 500 198 0 159 chr1 145553606 145553738 -51641694 - B1_Mur3 SINE Alu -35 114 4 1 1695 249 172 0 0 chr1 145553741 145553805 -51641627 + (CCA)n Simple_repeat Simple_repeat 3 66 0 1 1695 656 279 81 18 chr1 145553916 145554200 -51641232 - L1MC1 LINE L1 -5550 958 657 1 1695 192 158 0 0 chr1 145554381 145554419 -51641013 + T-rich Low_complexity Low_complexity 1 38 0 1 1695 269 154 0 71 chr1 145554474 145554539 -51640893 + B1_Mus2 SINE Alu 60 147 0 1 1695 34 0 0 0 chr1 145554599 145554633 -51640799 + AT_rich Low_complexity Low_complexity 1 34 0 1 1695 539 198 215 0 chr1 145554674 145554795 -51640637 - B1_Mus2 SINE Alu 0 147 1 1 1695 375 262 0 0 chr1 145555370 145555450 -51639982 - B1_Mur2 SINE Alu 0 149 70 1 1695 367 335 72 24 chr1 145555619 145555827 -51639605 - ID_B1 SINE B4 -6 218 1 1 1695 1045 83 7 46 chr1 145555932 145556084 -51639348 - B1_Mus1 SINE Alu -1 147 2 1 1695 631 136 65 41 chr1 145556457 145556580 -51638852 - B1_Mur3 SINE Alu -7 142 17 1 1695 198 0 0 0 chr1 145557006 145557028 -51638404 + (CTG)n Simple_repeat Simple_repeat 1 22 0 1 1695 1152 0 0 0 chr1 145557028 145557156 -51638276 + (TTC)n Simple_repeat Simple_repeat 3 130 0 1 1695 227 296 22 22 chr1 145558107 145558197 -51637235 - MER58C DNA MER1_type -19 196 107 1 1695 39189 40 0 2 chr1 145558197 145564326 -51631106 - L1Md_T LINE L1 -10 6575 364 1 1695 231 114 0 0 chr1 145564342 145564377 -51631055 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 1 1695 318 315 94 0 chr1 145564718 145564845 -51630587 + ID_B1 SINE B4 21 159 -65 1 1695 233 237 51 38 chr1 145564792 145564871 -51630561 + PB1D10 SINE Alu 25 104 -13 1 1695 351 0 0 0 chr1 145565641 145565680 -51629752 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1695 202 410 79 0 chr1 145565787 145565926 -51629506 + MIR SINE MIR 42 191 -71 1 1695 1021 160 0 7 chr1 145565938 145566089 -51629343 + B1_Mur4 SINE Alu 1 150 0 1 1695 506 300 18 36 chr1 145566611 145566777 -51628655 - RSINE1 SINE B4 0 165 3 1 1695 252 292 10 10 chr1 145566939 145567036 -51628396 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1695 712 289 59 0 chr1 145567044 145567248 -51628184 - B4A SINE B4 0 292 77 1 1695 1381 196 43 3 chr1 145567199 145567481 -51627951 - RLTR25A LTR ERVK -805 298 6 1 1695 191 36 36 0 chr1 145567622 145567650 -51627782 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1695 1276 43 0 0 chr1 145567656 145567797 -51627635 - B1_Mus1 SINE Alu -7 141 1 1 1695 264 284 0 13 chr1 145568772 145568847 -51626585 + MLT1A1 LTR MaLR 333 406 -2 1 1695 636 215 89 0 chr1 145569514 145569649 -51625783 + B1_Mus2 SINE Alu 1 147 0 1 1695 550 293 20 25 chr1 145570060 145570256 -51625176 + MER89 LTR ERV1 365 559 0 1 1695 282 160 0 0 chr1 145570528 145570578 -51624854 + A-rich Low_complexity Low_complexity 1 50 0 1 1695 7303 60 1 1 chr1 145570692 145571590 -51623842 + L1_Mus1 LINE L1 5670 6567 0 1 1695 251 190 198 25 chr1 145572169 145572250 -51623182 + MTD LTR MaLR 298 392 -27 1 1695 795 217 28 0 chr1 145572507 145572650 -51622782 - B1_Mur3 SINE Alu -2 147 1 1 1695 318 280 92 37 chr1 145572742 145572905 -51622527 - Lx8 LINE L1 -2 7471 7300 1 1695 1669 263 108 32 chr1 145573021 145573559 -51621873 - Lx8 LINE L1 -364 7109 6531 1 1695 767 199 90 0 chr1 145573718 145573874 -51621558 + ORR1B1 LTR MaLR 5 174 -220 1 1695 323 62 39 58 chr1 145573943 145574046 -51621386 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1695 927 347 41 27 chr1 145574048 145574531 -51620901 + RMER15-int LTR ERVL 139 628 -4371 1 1695 360 0 0 0 chr1 145574531 145574571 -51620861 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1695 309 350 30 10 chr1 145574578 145574679 -51620753 - B3A SINE B2 -44 154 52 1 1695 484 327 62 23 chr1 145575229 145575489 -51619943 + RMER15-int LTR ERVL 665 934 -4065 1 1695 1236 54 0 13 chr1 145575506 145575655 -51619777 + B1_Mus1 SINE Alu 2 148 0 1 1695 200 34 0 33 chr1 145575661 145575691 -51619741 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1695 270 239 63 32 chr1 145575774 145575869 -51619563 - L2a LINE L2 -118 3308 3211 1 1695 40 0 0 0 chr1 145575882 145575922 -51619510 + AT_rich Low_complexity Low_complexity 1 40 0 1 1695 628 50 0 0 chr1 145575922 145576002 -51619430 + B2_Mm2 SINE B2 2 81 -114 1 1695 2234 234 161 22 chr1 145576086 145576684 -51618748 + RMER1A Other Other 194 874 -156 1 1695 1665 176 59 67 chr1 145576731 145577103 -51618329 - ORR1B1 LTR MaLR 0 394 26 1 1695 234 208 0 0 chr1 145577103 145577156 -51618276 + RMER1A Other Other 974 1026 -4 1 1695 1396 90 17 0 chr1 145577839 145578016 -51617416 - B2_Mm2 SINE B2 -14 181 2 1 1695 457 260 19 23 chr1 145578112 145578273 -51617159 + B3A SINE B2 1 162 -33 1 1695 220 189 0 0 chr1 145578311 145578348 -51617084 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1695 1215 114 11 17 chr1 145578533 145578712 -51616720 + B2_Mm1a SINE B2 2 179 -14 1 1695 387 120 9 0 chr1 145578733 145578797 -51616635 + B2_Mm2 SINE B2 47 114 -102 1 1695 402 21 0 0 chr1 145578799 145578846 -51616586 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1695 30 27 0 0 chr1 145578846 145578883 -51616549 + AT_rich Low_complexity Low_complexity 1 37 0 1 1695 378 281 214 53 chr1 145578901 145579218 -51616214 + RLTR9A LTR ERVK 1 368 0 1 1695 853 153 43 28 chr1 145579350 145579491 -51615941 + B1_Mur2 SINE Alu 5 147 -2 1 1695 260 83 474 20 chr1 145579684 145579786 -51615646 - B2_Mm2 SINE B2 -1 194 47 1 1695 1264 114 11 0 chr1 145579825 145580001 -51615431 - B2_Mm1t SINE B2 -14 179 2 1 1695 829 162 35 21 chr1 145581126 145581271 -51614161 - B1_Mur2 SINE Alu 0 149 3 1 1695 327 297 133 71 chr1 145581334 145581544 -51613888 + B4A SINE B4 69 291 -1 1 1695 24 0 0 0 chr1 145581595 145581619 -51613813 + AT_rich Low_complexity Low_complexity 1 24 0 1 1695 820 55 0 18 chr1 145581648 145581760 -51613672 + B1_Mus1 SINE Alu 39 148 0 1 1695 565 296 16 87 chr1 145582202 145582387 -51613045 - MTE2a LTR MaLR -133 246 75 1 1695 465 155 25 13 chr1 145582391 145582471 -51612961 + Lx6 LINE L1 6922 7023 -450 1 1695 1451 73 11 0 chr1 145582471 145582648 -51612784 + B2_Mm1t SINE B2 1 179 -14 1 1695 294 230 33 33 chr1 145582648 145582659 -51612773 + Lx6 LINE L1 7024 7034 -439 1 1695 442 72 169 19 chr1 145582662 145582774 -51612658 + B2_Mm2 SINE B2 48 192 -1 1 1695 1866 207 153 65 chr1 145582775 145583409 -51612023 + Lx7 LINE L1 7005 7694 -2 1 1695 280 258 61 0 chr1 145583415 145583481 -51611951 - MTE2a LTR MaLR -309 70 1 1 1695 853 101 35 0 chr1 145583570 145583739 -51611693 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 1695 767 194 0 29 chr1 145584119 145584257 -51611175 - B1_Mur3 SINE Alu -11 138 5 1 1695 501 289 99 49 chr1 145584358 145584642 -51610790 - L1MA9 LINE L1 -58 6254 5957 1 1695 447 294 21 7 chr1 145584686 145584830 -51610602 - B1_Mur3 SINE Alu -1 148 3 1 1695 329 58 19 0 chr1 145585013 145585065 -51610367 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1695 1309 34 0 0 chr1 145585823 145585970 -51609462 + B1_Mm SINE Alu 1 147 0 1 1695 22 35 0 0 chr1 145586891 145586920 -51608512 + GC_rich Low_complexity Low_complexity 1 29 0 1 1695 1339 27 0 0 chr1 145587677 145587824 -51607608 - B1_Mm SINE Alu 0 147 1 1 1695 1087 58 57 14 chr1 145588385 145588526 -51606906 + B1_Mus2 SINE Alu 1 147 0 1 1695 268 250 0 26 chr1 145589074 145589152 -51606280 - B4A SINE B4 -8 284 209 1 1695 244 303 65 83 chr1 145589232 145589340 -51606092 - B1F SINE Alu -43 106 1 1 1695 888 197 0 0 chr1 145590601 145590748 -51604684 + B1_Mur4 SINE Alu 3 149 -1 1 1695 973 100 247 0 chr1 145590890 145591040 -51604392 + B2_Mm1t SINE B2 1 187 -6 2 1695 251 337 58 52 chr1 145591282 145591376 -51604056 + MIR SINE MIR 3 103 -159 2 1695 2377 96 12 61 chr1 145591376 145591720 -51603712 + ORR1A2 LTR MaLR 1 327 0 2 1695 251 337 58 52 chr1 145591720 145591816 -51603616 + MIR SINE MIR 104 194 -68 2 1695 203 0 0 36 chr1 145592553 145592581 -51602851 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 2 1695 705 96 9 9 chr1 145592634 145592739 -51602693 - Lx LINE L1 -306 6348 6244 2 1695 376 38 0 0 chr1 145592739 145592792 -51602640 + Lx LINE L1 6599 6651 -3 2 1695 403 241 70 18 chr1 145594388 145594502 -51600930 - PB1D7 SINE Alu 0 120 1 2 1695 267 291 101 74 chr1 145594550 145594739 -51600693 + MLT1A1 LTR MaLR 1 194 -214 2 1695 248 232 0 0 chr1 145594827 145594883 -51600549 + MLT1A1 LTR MaLR 345 400 -8 2 1695 6028 59 15 1 chr1 145595667 145596397 -51599035 - L1_Mus3 LINE L1 -5 6633 5894 2 1695 1297 48 0 0 chr1 145596626 145596773 -51598659 + B1_Mus2 SINE Alu 1 147 0 2 1695 213 299 15 15 chr1 145597041 145597109 -51598323 + B4 SINE B4 11 78 -214 2 1695 301 305 47 71 chr1 145597289 145597416 -51598016 - RSINE1 SINE B4 -29 136 13 2 1695 368 292 64 21 chr1 145597496 145597636 -51597796 + RSINE1 SINE B4 19 164 -1 2 1695 306 50 0 0 chr1 145597727 145597767 -51597665 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1695 792 146 305 0 chr1 145600502 145600666 -51594766 - B3 SINE B2 -1 215 2 2 1695 445 264 76 28 chr1 145601113 145601257 -51594175 - RSINE1 SINE B4 -14 151 1 2 1695 29 0 0 0 chr1 145601546 145601575 -51593857 + AT_rich Low_complexity Low_complexity 1 29 0 2 1695 759 178 15 44 chr1 145602412 145602547 -51592885 + B1_Mm SINE Alu 3 133 -14 2 1695 240 35 0 0 chr1 145602547 145602576 -51592856 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 2 1695 216 0 0 0 chr1 145602701 145602725 -51592707 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1695 780 103 0 0 chr1 145602727 145602834 -51592598 - B1_Mm SINE Alu -3 144 38 2 1695 928 150 57 0 chr1 145602839 145602979 -51592453 - B1_Mur1 SINE Alu 0 149 2 2 1695 283 240 48 96 chr1 145605282 145605365 -51590067 - ID4 SINE ID -4 79 1 2 1695 28 61 0 0 chr1 145605431 145605480 -51589952 + AT_rich Low_complexity Low_complexity 1 49 0 2 1695 904 259 31 5 chr1 145605499 145605693 -51589739 - ID_B1 SINE B4 -5 219 21 2 1695 395 243 45 134 chr1 145605706 145605810 -51589622 - B1F SINE Alu -6 143 54 2 1695 816 245 9 84 chr1 145605810 145606024 -51589408 - B3A SINE B2 0 198 1 2 1695 395 243 45 134 chr1 145606024 145606076 -51589356 - B1F SINE Alu -96 53 1 2 1695 29 0 0 0 chr1 145606101 145606130 -51589302 + AT_rich Low_complexity Low_complexity 1 29 0 2 1695 180 111 0 0 chr1 145606161 145606188 -51589244 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 2 1695 277 296 94 17 chr1 145606460 145606577 -51588855 - MER5A DNA MER1_type -63 126 1 2 1695 267 312 42 0 chr1 145606609 145606705 -51588727 - MER3 DNA MER1_type -91 118 19 2 1695 473 188 51 43 chr1 145607760 145607877 -51587555 + RSINE1 SINE B4 4 121 -44 2 1695 180 0 0 0 chr1 145609158 145609178 -51586254 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1695 1252 49 0 0 chr1 145609178 145609322 -51586110 - B1_Mm SINE Alu 0 147 4 2 1695 564 165 14 63 chr1 145609375 145609517 -51585915 - B1_Mus2 SINE Alu 0 147 13 2 1695 223 290 37 147 chr1 145609517 145609560 -51585872 - B4 SINE B4 -62 225 62 2 1695 619 290 181 29 chr1 145609712 145609975 -51585457 - L1M3 LINE L1 -602 5572 5270 2 1695 1330 34 0 0 chr1 145609975 145610122 -51585310 - B1_Mus2 SINE Alu 0 147 1 2 1695 619 281 200 50 chr1 145610122 145610247 -51585185 - L1M3 LINE L1 -871 5269 5120 2 1695 1011 135 0 45 chr1 145610247 145610402 -51585030 - B1_Mus1 SINE Alu 0 148 1 2 1695 619 281 200 50 chr1 145610402 145610882 -51584550 - L1M3 LINE L1 -1021 5119 4555 2 1695 512 271 54 8 chr1 145611064 145611194 -51584238 - ID_B1 SINE B4 -4 220 85 2 1695 1568 73 0 5 chr1 145611231 145611425 -51584007 - B2_Mm2 SINE B2 -2 193 1 2 1695 404 311 110 78 chr1 145611553 145611683 -51583749 - L1M3 LINE L1 -1986 4154 4014 2 1695 807 190 42 42 chr1 145611683 145611875 -51583557 - B2_Mm2 SINE B2 -3 192 1 2 1695 381 277 131 20 chr1 145611875 145612152 -51583280 - L1M3 LINE L1 -2129 4017 3734 2 1695 320 287 114 16 chr1 145613417 145613601 -51581831 - B4A SINE B4 -2 290 89 2 1695 1799 217 156 49 chr1 145614521 145615189 -51580243 + RLTR40 LTR ERVK 19 757 -60 2 1695 191 114 29 0 chr1 145615403 145615438 -51579994 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 2 1695 222 62 0 0 chr1 145615461 145615493 -51579939 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1695 1067 71 50 0 chr1 145615497 145615638 -51579794 - B1_Mus1 SINE Alu 0 148 1 2 1695 388 284 75 9 chr1 145615653 145615784 -51579648 + PB1 SINE Alu 1 128 -21 2 1695 275 254 13 53 chr1 145615883 145615958 -51579474 + ID4_ SINE ID 3 74 -9 2 1695 189 74 0 0 chr1 145616788 145616815 -51578617 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1695 479 184 10 39 chr1 145616838 145616940 -51578492 + B3A SINE B2 3 101 -97 2 1695 618 170 0 0 chr1 145619520 145619620 -51575812 - B1_Mus2 SINE Alu -13 134 35 2 1695 260 220 143 84 chr1 145619620 145619635 -51575797 - MT2B LTR ERVL -309 288 167 2 1695 305 258 111 0 chr1 145620205 145620311 -51575121 - PB1D10 SINE Alu -17 131 13 2 211 3772 219 70 59 chr1 145620410 145622159 -51573273 + Lx9 LINE L1 4815 6724 -920 2 1696 312 302 72 10 chr1 145622469 145622566 -51572866 + MER21B LTR ERV1 40 142 -721 2 1696 199 89 0 82 chr1 145624159 145624208 -51571224 + (CCCCG)n Simple_repeat Simple_repeat 5 49 0 2 1696 186 308 0 15 chr1 145626282 145626348 -51569084 - L2 LINE L2 -926 2493 2429 2 1696 500 239 83 41 chr1 145626730 145626948 -51568484 + BLACKJACK DNA AcHobo 1143 1369 -1575 2 1696 296 263 126 39 chr1 145627802 145627905 -51567527 + B3A SINE B2 87 198 0 2 1696 891 251 15 25 chr1 145627928 145628132 -51567300 + B3 SINE B2 3 204 -12 2 1696 237 229 181 97 chr1 145628584 145628739 -51566693 + BLACKJACK DNA AcHobo 2772 2939 -5 2 1696 181 321 36 0 chr1 145628931 145628987 -51566445 + MIRm SINE MIR 202 259 -17 2 1696 350 74 0 18 chr1 145629025 145629080 -51566352 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1696 519 311 78 100 chr1 145629095 145629366 -51566066 - B4A SINE B4 -24 268 4 2 1696 209 103 26 0 chr1 145630373 145630404 -51565028 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1696 1255 124 0 15 chr1 145630404 145630600 -51564832 + B2_Mm2 SINE B2 2 194 -1 2 1696 209 103 26 0 chr1 145630600 145630607 -51564825 + (GAAAA)n Simple_repeat Simple_repeat 4 10 0 2 1696 1313 93 16 0 chr1 145631201 145631384 -51564048 - B2_Mm2 SINE B2 -8 187 2 2 1696 430 296 51 22 chr1 145631994 145632132 -51563300 + B1F SINE Alu 1 142 -7 2 1696 1205 48 0 20 chr1 145632417 145632567 -51562865 + B1_Mm SINE Alu 1 147 0 2 1696 327 268 92 30 chr1 145632697 145632723 -51562709 - ID_B1 SINE B4 0 224 200 2 1696 844 161 28 0 chr1 145632723 145632866 -51562566 + B1_Mus2 SINE Alu 1 147 0 2 1696 392 216 52 0 chr1 145632873 145632970 -51562462 - B1_Mur1 SINE Alu -43 106 5 2 1696 359 225 97 43 chr1 145633402 145633588 -51561844 - Charlie1 DNA MER1_type -16 2765 2570 2 1696 1102 96 0 0 chr1 145633640 145633786 -51561646 + B1_Mus2 SINE Alu 2 147 0 2 1696 1279 298 136 50 chr1 145633838 145634981 -51560451 - Charlie1 DNA MER1_type -190 2591 1587 2 1696 364 272 44 0 chr1 145635849 145635939 -51559493 - PB1D10 SINE Alu -12 108 13 2 1696 225 290 28 100 chr1 145635863 145636043 -51559389 + YREP_Mm Unknown Unknown 227 393 -1419 2 1696 783 212 28 34 chr1 145636108 145636284 -51559148 - B3 SINE B2 -41 175 1 2 1696 1396 79 5 16 chr1 145636322 145636515 -51558917 - B2_Mm1t SINE B2 -1 192 2 2 1696 533 314 91 34 chr1 145636949 145637213 -51558219 - MER77 LTR ERVL -44 563 285 2 1696 699 12 0 0 chr1 145637678 145637758 -51557674 + (TTCTC)n Simple_repeat Simple_repeat 1 80 0 2 1696 707 87 0 9 chr1 145637758 145637863 -51557569 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 2 1696 448 369 66 42 chr1 145637948 145638234 -51557198 - MLT1J LTR MaLR -203 309 17 2 1696 612 312 92 85 chr1 145638488 145638877 -51556555 - Lx8 LINE L1 -10 7463 7072 2 1696 226 159 23 0 chr1 145639844 145639888 -51555544 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 1696 502 233 0 19 chr1 145640247 145640352 -51555080 - B1F2 SINE Alu 0 149 47 2 1696 671 258 31 31 chr1 145640354 145640546 -51554886 - B3A SINE B2 -6 192 1 2 1696 435 308 51 6 chr1 145640702 145640859 -51554573 + MIR SINE MIR 67 230 -32 2 1696 213 203 51 0 chr1 145641682 145641741 -51553691 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 2 1696 24 0 0 0 chr1 145642164 145642188 -51553244 + AT_rich Low_complexity Low_complexity 1 24 0 2 1696 363 244 38 4 chr1 145642193 145642308 -51553124 - PB1D10 SINE Alu -1 116 1 2 1696 221 105 32 95 chr1 145642490 145642553 -51552879 + (CAGAGA)n Simple_repeat Simple_repeat 1 59 0 2 1696 1600 26 16 0 chr1 145644040 145644230 -51551202 + B2_Mm1t SINE B2 1 193 0 2 1696 291 219 110 0 chr1 145644387 145644460 -51550972 - ID4_ SINE ID -1 82 2 2 1696 29 28 0 0 chr1 145645064 145645100 -51550332 + AT_rich Low_complexity Low_complexity 1 36 0 2 1696 496 243 160 58 chr1 145645764 145645952 -51549480 - B4A SINE B4 -71 221 15 2 1696 3029 42 45 0 chr1 145646409 145646788 -51548644 - MTA_Mm LTR MaLR 0 396 1 2 1696 254 204 44 177 chr1 145647542 145647655 -51547777 - B1F1 SINE Alu -1 148 51 2 1696 25 31 0 0 chr1 145647918 145647950 -51547482 + AT_rich Low_complexity Low_complexity 1 32 0 2 1696 1208 48 0 0 chr1 145647997 145648144 -51547288 - B1_Mus2 SINE Alu 0 147 1 2 1696 403 246 168 8 chr1 145650014 145650145 -51545287 - MER5A DNA MER1_type -36 153 2 3 1696 253 309 37 0 chr1 145650560 145650641 -51544791 + PB1D10 SINE Alu 5 88 -29 3 1696 270 0 0 0 chr1 145650754 145650784 -51544648 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1696 429 291 0 9 chr1 145652297 145652408 -51543024 + PB1D10 SINE Alu 1 110 -7 3 1696 265 253 57 57 chr1 145652676 145652764 -51542668 - PB1D10 SINE Alu -25 92 5 3 1696 192 235 0 0 chr1 145652903 145652937 -51542495 + MER5A DNA MER1_type 27 60 -129 3 1696 277 187 13 13 chr1 145653202 145653278 -51542154 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 3 1696 22 0 0 0 chr1 145653424 145653446 -51541986 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 193 321 48 0 chr1 145653993 145654077 -51541355 + MIRc SINE MIR 144 231 -37 3 1696 861 286 77 90 chr1 145655117 145655203 -51540229 - L1_Mur3 LINE L1 -23 5857 5751 3 1696 731 170 42 21 chr1 145655203 145655347 -51540085 - B1_Mus2 SINE Alu 0 147 1 3 1696 861 286 77 90 chr1 145655347 145655555 -51539877 - L1_Mur3 LINE L1 -130 5750 5570 3 1696 825 135 56 14 chr1 145655555 145655698 -51539734 - B1_Mur4 SINE Alu -1 149 1 3 1696 861 286 77 90 chr1 145655698 145655989 -51539443 - L1_Mur3 LINE L1 -311 5569 5280 3 1696 527 274 22 0 chr1 145657797 145657932 -51537500 - ID_B1 SINE B4 -7 217 80 3 1696 436 291 90 28 chr1 145658846 145659023 -51536409 - MamRep605 Unknown Unknown -216 660 473 3 1696 278 318 71 45 chr1 145659565 145659677 -51535755 - RMER15 LTR ERVL -162 413 299 3 1696 238 220 51 0 chr1 145659854 145659913 -51535519 - MTD LTR MaLR -257 162 101 3 1696 1113 244 79 97 chr1 145660029 145660233 -51535199 + MTE2a LTR MaLR 6 198 -181 3 1696 297 68 0 0 chr1 145660233 145660277 -51535155 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 3 1696 1113 244 79 97 chr1 145660277 145660453 -51534979 + MTE2a LTR MaLR 199 379 0 3 1696 2239 177 70 50 chr1 145660765 145661264 -51534168 - RMER1B Other Other -12 1054 546 3 1696 1727 199 60 22 chr1 145661239 145661608 -51533824 - RMER1B Other Other -651 415 33 3 1696 621 228 0 45 chr1 145661651 145661807 -51533625 - B1F SINE Alu 0 149 1 3 1696 28 29 0 0 chr1 145662029 145662064 -51533368 + AT_rich Low_complexity Low_complexity 1 35 0 3 1696 446 195 0 0 chr1 145662969 145663051 -51532381 + B4A SINE B4 6 87 -205 3 1696 197 283 0 0 chr1 145663291 145663351 -51532081 - L2b LINE L2 -234 3141 3082 3 1696 40 91 0 0 chr1 145663886 145663996 -51531436 + AT_rich Low_complexity Low_complexity 1 110 0 3 1696 720 146 145 8 chr1 145664508 145664639 -51530793 - B1_Mur2 SINE Alu 0 149 1 3 1696 692 234 31 47 chr1 145664972 145665165 -51530267 - B3A SINE B2 0 198 9 3 1696 29 28 0 0 chr1 145665330 145665366 -51530066 + AT_rich Low_complexity Low_complexity 1 36 0 3 1696 270 0 21 62 chr1 145665845 145665893 -51529539 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 1696 288 0 0 0 chr1 145668334 145668366 -51527066 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1696 243 310 119 26 chr1 145668566 145668689 -51526743 - MIRb SINE MIR -108 168 36 3 1696 1558 148 29 11 chr1 145668794 145669074 -51526358 - RLTR14 LTR ERV1 -95 287 3 3 1696 397 262 71 30 chr1 145670291 145670460 -51524972 + MIRb SINE MIR 92 267 -1 3 1696 207 205 0 0 chr1 145670480 145670519 -51524913 - MER5A DNA MER1_type -83 106 68 3 1696 934 129 35 28 chr1 145671277 145671421 -51524011 + B1_Mus1 SINE Alu 3 147 -1 3 1696 198 395 25 0 chr1 145671505 145671586 -51523846 + L2a LINE L2 3280 3362 -64 3 1696 235 354 108 0 chr1 145671722 145671852 -51523580 - MIRc SINE MIR -111 157 14 3 1696 229 325 77 13 chr1 145672460 145672538 -51522894 - BC1_Mm scRNA scRNA -64 88 6 3 1696 251 331 59 79 chr1 145672649 145672852 -51522580 - ORR1D2 LTR MaLR -2 368 170 3 1696 230 182 0 22 chr1 145673435 145673480 -51521952 + B4A SINE B4 8 51 -241 3 1696 570 210 0 0 chr1 145673677 145673801 -51521631 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1696 194 269 43 29 chr1 145674008 145674077 -51521355 + MIRc SINE MIR 3 72 -196 3 1696 2235 181 67 22 chr1 145674136 145674356 -51521076 - Lx2B LINE L1 -4 6996 6754 3 1696 1059 215 160 11 chr1 145674356 145674713 -51520719 - RMER17C LTR ERVK 0 410 1 3 1696 2235 181 67 22 chr1 145674713 145674956 -51520476 - Lx2B LINE L1 -247 6753 6512 3 1696 397 158 168 0 chr1 145674938 145675039 -51520393 + Lx2B LINE L1 6410 6527 -473 3 1696 256 341 74 10 chr1 145676042 145676202 -51519230 + MIR3 SINE MIR 19 193 -15 3 1696 294 169 0 46 chr1 145676434 145676521 -51518911 + GA-rich Low_complexity Low_complexity 5 87 0 3 1696 563 281 109 0 chr1 145677145 145677198 -51518234 - B3 SINE B2 -3 213 155 3 1696 366 107 0 0 chr1 145677198 145677254 -51518178 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1696 563 281 109 0 chr1 145677254 145677392 -51518040 - B3 SINE B2 -62 154 2 3 1696 315 322 103 17 chr1 145677409 145677526 -51517906 - MLT2B1 LTR ERVL -97 470 344 3 1696 3273 36 0 0 chr1 145679084 145679441 -51515991 - IAPEY2_LTR LTR ERVK 0 357 1 3 1696 1030 8 17 0 chr1 145679444 145679563 -51515869 - IAPEY3-int LTR ERVK -4 7676 7556 3 1696 194 368 44 0 chr1 145679594 145679708 -51515724 - L3b LINE CR1 -29 453 335 3 1696 3641 65 9 0 chr1 145679723 145680171 -51515261 - IAPEY3-int LTR ERVK -4991 2689 2238 3 1696 9505 115 12 40 chr1 145680148 145681649 -51513783 - IAPEY3-int LTR ERVK -5698 1982 524 3 1696 782 140 51 39 chr1 145681648 145681804 -51513628 - IAPLTR4_I LTR ERVK -1290 180 23 3 1696 449 252 26 9 chr1 145681912 145682028 -51513404 + PB1D9 SINE Alu 3 120 0 3 1696 440 167 0 22 chr1 145682064 145682156 -51513276 + CT-rich Low_complexity Low_complexity 4 93 0 3 1696 2900 146 5 2 chr1 145682186 145682606 -51512826 - MTC LTR MaLR 0 421 1 3 1696 344 343 28 9 chr1 145682798 145682904 -51512528 + PB1D7 SINE Alu 2 109 -11 3 1696 644 256 16 0 chr1 145682939 145683068 -51512364 + ID_B1 SINE B4 86 216 -8 3 1696 237 204 102 0 chr1 145683025 145683074 -51512358 + PB1D9 SINE Alu 65 118 -2 3 1696 686 247 55 79 chr1 145683238 145683278 -51512154 + B3A SINE B2 2 38 -160 3 1696 1617 68 0 0 chr1 145683278 145683470 -51511962 + B2_Mm1a SINE B2 2 193 0 3 1696 686 247 55 79 chr1 145683470 145683631 -51511801 + B3A SINE B2 39 198 0 3 1696 231 344 124 31 chr1 145683704 145683833 -51511599 + MIR3 SINE MIR 65 205 -3 3 1696 328 260 79 10 chr1 145685003 145685104 -51510328 - MLT1K LTR MaLR -350 245 138 3 1696 235 429 15 0 chr1 145685655 145685788 -51509644 - LTR16A LTR ERVL -96 355 221 3 1696 24 67 0 0 chr1 145686719 145686764 -51508668 + AT_rich Low_complexity Low_complexity 1 45 0 3 1696 459 0 0 0 chr1 145687035 145687086 -51508346 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1696 599 302 90 47 chr1 145687216 145687428 -51508004 - B4A SINE B4 -68 224 4 3 1696 27 0 0 0 chr1 145688259 145688286 -51507146 + AT_rich Low_complexity Low_complexity 1 27 0 3 1696 1724 44 0 0 chr1 145688508 145688712 -51506720 - L1Md_F2 LINE L1 -155 5728 5525 3 1696 7254 55 12 14 chr1 145688719 145689599 -51505833 + L1Md_F2 LINE L1 5704 6582 0 3 1696 22 0 0 0 chr1 145689788 145689810 -51505622 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 255 200 62 62 chr1 145689879 145689943 -51505489 + tRNA-Ala-GCY_ tRNA tRNA 3 66 -9 3 1696 255 250 75 50 chr1 145689943 145689954 -51505478 + ID4_ SINE ID 7 83 0 3 1696 39 22 0 0 chr1 145690615 145690661 -51504771 + AT_rich Low_complexity Low_complexity 1 46 0 3 1696 8993 206 26 40 chr1 145690734 145692568 -51502864 - Lx6 LINE L1 -5 7455 5648 3 1696 1135 170 0 0 chr1 145692579 145692767 -51502665 - ORR1B2 LTR MaLR 0 367 180 3 1696 1627 154 4 0 chr1 145692769 145693029 -51502403 + ORR1B1 LTR MaLR 134 394 0 3 1696 3460 206 48 6 chr1 145693035 145693704 -51501728 - RMER1B Other Other -3 1063 367 3 1696 2222 146 41 112 chr1 145693703 145694073 -51501359 - L1_Mur3 LINE L1 -2403 3477 3137 3 1696 402 57 0 0 chr1 145694073 145694126 -51501306 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 1696 2222 146 41 112 chr1 145694126 145694293 -51501139 - L1_Mur3 LINE L1 -2744 3136 2978 3 1696 3463 40 15 17 chr1 145694293 145694705 -51500727 - IAPLTR2a LTR ERVK 0 411 1 3 1696 7183 32 4 0 chr1 145694707 145695531 -51499901 - IAPEz-int LTR ERVK -2 6479 5653 3 1696 2680 73 0 3 chr1 145695526 145695869 -51499563 - IAPEz-int LTR ERVK -4781 1700 1359 3 1696 3582 79 25 39 chr1 145695869 145696519 -51498913 - IAPEz-int LTR ERVK -5819 662 168 3 1696 239 327 0 0 chr1 145696519 145696574 -51498858 - RLTR27 LTR ERVK -34 275 221 3 1696 1156 98 10 80 chr1 145696574 145696773 -51498659 - IAPEz-int LTR ERVK -6288 193 9 3 1696 3437 45 15 17 chr1 145696774 145697186 -51498246 - IAPLTR2a LTR ERVK 0 411 1 3 1696 762 117 0 0 chr1 145697186 145697297 -51498135 - L1_Mur3 LINE L1 -2897 2983 2873 3 1696 2356 162 47 27 chr1 145697286 145697984 -51497448 - L1_Mur3 LINE L1 -4313 1567 859 3 1696 848 266 4 8 chr1 145697978 145698213 -51497219 - L1_Mur3 LINE L1 -7167 561 328 3 1696 338 244 48 66 chr1 145698239 145698360 -51497072 - PB1D9 SINE Alu 0 149 6 3 1696 21 36 0 0 chr1 145699067 145699095 -51496337 + AT_rich Low_complexity Low_complexity 1 28 0 3 1696 339 262 47 54 chr1 145699168 145699297 -51496135 + MER99 DNA hAT? 2 129 -702 3 1696 23 68 0 0 chr1 145703765 145703809 -51491623 + AT_rich Low_complexity Low_complexity 1 44 0 3 1696 669 333 78 41 chr1 145705030 145705371 -51490061 + MLT1D LTR MaLR 8 376 -129 3 1696 408 265 87 14 chr1 145705968 145706106 -51489326 + L1MA9 LINE L1 6104 6251 -61 3 1696 2398 121 6 14 chr1 145706110 145706472 -51488960 - ORR1B2 LTR MaLR 0 367 9 3 1696 387 0 0 0 chr1 145706474 145706517 -51488915 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1696 3406 40 2 20 chr1 145707787 145708194 -51487238 - MTB LTR MaLR 0 400 1 3 1696 330 152 0 0 chr1 145709155 145709214 -51486218 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 1696 36344 34 0 0 chr1 145709225 145714873 -51480559 + L1Md_T LINE L1 1 5589 -297 3 1696 9525 5 1 1 chr1 145714873 145715869 -51479563 + L1Md_T LINE L1 5590 6585 0 3 1696 1255 61 0 0 chr1 145715898 145716046 -51479386 + B1_Mus1 SINE Alu 1 148 0 3 1696 181 374 12 0 chr1 145716061 145716144 -51479288 + L2 LINE L2 1287 1370 -2049 3 1696 224 383 50 20 chr1 145716158 145716358 -51479074 + L2 LINE L2 1434 1639 -1780 3 1696 770 205 5 125 chr1 145716511 145716695 -51478737 + RMER15 LTR ERVL 414 575 0 3 1696 365 230 138 50 chr1 145716695 145716756 -51478676 - ORR1C2 LTR MaLR -41 343 283 3 1696 2151 188 19 14 chr1 145716756 145717117 -51478315 - ORR1B2 LTR MaLR 0 367 5 3 1696 365 230 138 50 chr1 145717117 145717170 -51478262 - ORR1C2 LTR MaLR -102 282 226 3 1696 477 110 0 0 chr1 145717170 145717243 -51478189 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1696 365 230 138 50 chr1 145717243 145717286 -51478146 - ORR1C2 LTR MaLR -159 225 172 3 1696 465 92 0 0 chr1 145717288 145717364 -51478068 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 1696 5752 27 0 0 chr1 145717398 145718023 -51477409 + L1Md_T LINE L1 5958 6582 0 3 1696 23 0 0 0 chr1 145718524 145718547 -51476885 + AT_rich Low_complexity Low_complexity 1 23 0 3 1696 1389 52 0 0 chr1 145718670 145719023 -51476409 + (TG)n Simple_repeat Simple_repeat 1 353 0 4 1696 231 346 0 13 chr1 145719711 145719790 -51475642 - Charlie24 DNA MER1_type -7 2443 2366 4 1696 21 0 0 0 chr1 145722204 145722225 -51473207 + AT_rich Low_complexity Low_complexity 1 21 0 4 1696 243 324 70 49 chr1 145722838 145722981 -51472451 + MER45C DNA Tip100 659 804 -149 4 1696 4105 112 41 100 chr1 145723370 145724168 -51471264 - RMER17A LTR ERVK 0 751 1 4 1696 753 272 38 11 chr1 145724223 145724409 -51471023 + B3A SINE B2 8 198 0 4 1696 930 156 172 0 chr1 145724808 145724994 -51470438 - URR1B DNA MER1_type 0 225 8 4 1696 237 22 65 22 chr1 145727018 145727064 -51468368 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 4 1696 228 253 47 71 chr1 145727131 145727147 -51468285 - B2_Mm1t SINE B2 -110 83 1 4 1696 358 206 14 14 chr1 145727147 145727216 -51468216 - B4A SINE B4 -223 69 1 4 1696 214 50 24 24 chr1 145727354 145727395 -51468037 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 4 1696 474 82 35 0 chr1 145728188 145728273 -51467159 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1696 264 309 85 31 chr1 145728493 145728623 -51466809 - MIR3 SINE MIR -9 199 63 4 1696 1054 200 26 97 chr1 145729612 145729922 -51465510 - B4A SINE B4 0 292 5 4 1696 193 329 65 13 chr1 145730382 145730459 -51464973 + L2 LINE L2 2534 2614 -805 4 1696 251 250 0 0 chr1 145730688 145730736 -51464696 + polypyrimidine Low_complexity Low_complexity 2 49 0 4 1696 5379 63 4 10 chr1 145731156 145731398 -51464034 - L1_Mus3 LINE L1 -7 6631 6394 4 1696 2782 53 9 0 chr1 145731398 145731740 -51463692 + IAPLTR4 LTR ERVK 1 345 0 4 1696 5379 63 4 10 chr1 145731740 145732199 -51463233 - L1_Mus3 LINE L1 -245 6393 5934 4 1696 425 124 112 26 chr1 145732910 145733026 -51462406 - L1_Mus4 LINE L1 0 6636 6511 4 1696 334 254 259 37 chr1 145733034 145733169 -51462263 - B4 SINE B4 -123 169 5 4 1696 234 400 80 0 chr1 145733563 145733713 -51461719 - LTR33 LTR ERVL -266 249 88 4 1696 303 291 164 52 chr1 145733728 145733862 -51461570 - B1F SINE Alu 0 149 1 4 1696 224 250 10 0 chr1 145733979 145734075 -51461357 + CT-rich Low_complexity Low_complexity 1 97 0 4 1696 267 305 0 0 chr1 145734104 145734163 -51461269 - PB1D7 SINE Alu -10 110 52 4 1696 939 305 54 18 chr1 145734701 145734789 -51460643 + L1MA4 LINE L1 5358 5445 -855 4 1696 1928 142 45 6 chr1 145734789 145735122 -51460310 - ORR1A1 LTR MaLR 0 346 1 4 1696 939 306 55 17 chr1 145735122 145735616 -51459816 + L1MA4 LINE L1 5446 5932 -368 4 1696 443 148 0 11 chr1 145735616 145735705 -51459727 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1696 372 331 50 17 chr1 145736780 145736961 -51458471 + LTR16C LTR ERVL 247 433 -56 4 1696 314 272 95 17 chr1 145737362 145737478 -51457954 + RMER15 LTR ERVL 451 575 0 4 1696 39021 12 0 6 chr1 145737559 145743746 -51451686 - L1Md_A LINE L1 0 6582 439 4 1696 396 0 0 0 chr1 145744476 145744520 -51450912 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1696 668 267 61 0 chr1 145744585 145744765 -51450667 - B3A SINE B2 0 198 8 4 1696 1717 252 38 29 chr1 145745142 145745984 -51449448 - Lx9 LINE L1 -375 7269 6375 4 1696 243 88 0 0 chr1 145745984 145746018 -51449414 + (TGG)n Simple_repeat Simple_repeat 2 35 0 4 1696 1717 262 31 23 chr1 145746018 145746071 -51449361 - Lx9 LINE L1 -1270 6374 6327 4 1696 591 236 18 0 chr1 145746146 145746256 -51449176 + B1F2 SINE Alu 2 113 -36 4 1696 3904 198 23 98 chr1 145746724 145747824 -51447608 - Lx9 LINE L1 -1 7643 6627 4 1696 198 0 0 0 chr1 145748353 145748375 -51447057 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1696 4580 40 0 12 chr1 145749307 145749865 -51445567 - L1_Mus1 LINE L1 -1 6566 6016 4 1696 297 156 0 0 chr1 145749882 145749959 -51445473 + A-rich Low_complexity Low_complexity 1 77 0 4 1696 316 248 66 47 chr1 145750113 145750219 -51445213 - PB1D7 SINE Alu 0 120 13 4 1696 610 276 7 7 chr1 145750301 145750447 -51444985 + ID_B1 SINE B4 79 224 0 4 1696 408 262 0 12 chr1 145751828 145751973 -51443459 - B3A SINE B2 -5 193 5 4 1697 474 310 38 124 chr1 145752708 145752973 -51442459 - RMER15 LTR ERVL -53 522 281 4 1697 1167 70 0 0 chr1 145753098 145753240 -51442192 - B1_Mus2 SINE Alu -5 142 1 4 1697 1222 106 45 0 chr1 145753374 145753553 -51441879 - B2_Mm2 SINE B2 -7 188 2 4 1697 562 280 126 62 chr1 145753621 145754439 -51440993 - L1ME1 LINE L1 -193 5986 5129 4 1697 536 329 0 0 chr1 145754548 145754694 -51440738 - ID_B1 SINE B4 0 224 79 4 1697 293 372 45 45 chr1 145754712 145754867 -51440565 - MLT1G LTR MaLR -82 509 355 4 1697 340 250 128 21 chr1 145755162 145755256 -51440176 - B1F1 SINE Alu -23 104 1 4 1697 3305 69 53 4 chr1 145756035 145756111 -51439321 - L1Md_F2 LINE L1 0 6582 6505 4 1697 207 69 0 0 chr1 145756111 145756140 -51439292 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 4 1697 3305 69 53 4 chr1 145756140 145756514 -51438918 - L1Md_F2 LINE L1 -78 6504 6112 4 1697 411 21 0 0 chr1 145756742 145756790 -51438642 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1697 804 48 0 0 chr1 145756790 145756894 -51438538 + (GA)n Simple_repeat Simple_repeat 1 105 0 4 1697 183 139 0 0 chr1 145757514 145757550 -51437882 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1697 288 277 95 11 chr1 145759373 145759468 -51435964 - PB1D7 SINE Alu -17 103 1 4 1697 336 109 0 0 chr1 145759571 145759617 -51435815 - B1_Mur4 SINE Alu -45 105 60 4 1697 21 0 0 0 chr1 145760680 145760701 -51434731 + AT_rich Low_complexity Low_complexity 1 21 0 4 1697 655 218 7 33 chr1 145761322 145761474 -51433958 - B1F SINE Alu -1 148 1 4 1697 3029 70 65 12 chr1 145763016 145763448 -51431984 - L1_Mus3 LINE L1 -7 6631 6177 4 1697 201 39 0 0 chr1 145764654 145764680 -51430752 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 4 1697 215 337 18 73 chr1 145765200 145765309 -51430123 - MIRc SINE MIR -127 141 39 4 1697 1954 5 0 0 chr1 145765860 145766080 -51429352 - L1Md_A LINE L1 0 6582 6363 4 1697 306 0 0 0 chr1 145767984 145768018 -51427414 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1697 637 331 16 0 chr1 145768176 145768418 -51427014 + Lx8 LINE L1 7034 7279 -194 4 1697 229 311 51 43 chr1 145768547 145768685 -51426747 - ORR1C2 LTR MaLR -236 148 10 4 1697 699 236 30 55 chr1 145769048 145769250 -51426182 + B3A SINE B2 2 198 0 4 1697 991 86 13 7 chr1 145769439 145769591 -51425841 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 4 1697 365 301 0 89 chr1 145769770 145769894 -51425538 - PB1D10 SINE Alu 0 117 5 4 1697 21 0 0 0 chr1 145770295 145770316 -51425116 + AT_rich Low_complexity Low_complexity 1 21 0 4 1697 23 0 0 0 chr1 145770447 145770470 -51424962 + AT_rich Low_complexity Low_complexity 1 23 0 4 1697 402 325 98 0 chr1 145770881 145771004 -51424428 + ID_B1 SINE B4 2 136 -88 4 1697 282 56 0 0 chr1 145771031 145771067 -51424365 + (CAAG)n Simple_repeat Simple_repeat 1 36 0 4 1697 254 407 44 0 chr1 145771364 145771499 -51423933 + MER5A DNA MER1_type 27 167 -22 4 1697 234 344 103 26 chr1 145771371 145771526 -51423906 - MER5A DNA MER1_type -22 167 1 4 1697 741 198 0 0 chr1 145771576 145771833 -51423599 + (CA)n Simple_repeat Simple_repeat 1 257 0 4 1697 317 252 9 66 chr1 145771940 145772046 -51423386 + ID_B1 SINE B4 72 171 -53 4 1697 201 74 0 0 chr1 145772090 145772117 -51423315 + (GAGAA)n Simple_repeat Simple_repeat 4 30 0 4 1697 721 214 33 33 chr1 145772132 145772316 -51423116 + L1MA4A LINE L1 5744 5927 -376 4 1697 189 74 0 0 chr1 145772331 145772358 -51423074 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1697 1413 81 16 0 chr1 145772934 145773120 -51422312 + B2_Mm2 SINE B2 3 191 -4 4 1697 24 67 0 0 chr1 145773519 145773564 -51421868 + AT_rich Low_complexity Low_complexity 1 45 0 4 1697 316 295 139 0 chr1 145773841 145773963 -51421469 + RMER15 LTR ERVL 432 570 -5 4 1697 684 392 11 21 chr1 145774496 145774709 -51420723 + B4A SINE B4 3 218 -74 4 1697 576 65 0 0 chr1 145774709 145774786 -51420646 + (CAGAG)n Simple_repeat Simple_repeat 1 77 0 4 1697 684 392 11 21 chr1 145774786 145774851 -51420581 + B4A SINE B4 219 277 -15 4 1697 200 125 25 0 chr1 145775442 145775482 -51419950 + (CATA)n Simple_repeat Simple_repeat 2 42 0 4 1697 607 178 155 0 chr1 145775907 145776036 -51419396 + B1_Mur4 SINE Alu 1 149 -1 4 1697 266 389 50 14 chr1 145776210 145776351 -51419081 - MIR3 SINE MIR -47 161 16 4 1697 204 357 30 20 chr1 145776644 145776744 -51418688 + MIRc SINE MIR 101 201 -67 4 1697 298 268 33 67 chr1 145777282 145777402 -51418030 - MIRb SINE MIR 0 268 153 4 1697 742 257 99 50 chr1 145778668 145778930 -51416502 + B4A SINE B4 3 277 -15 4 1697 306 0 0 0 chr1 145778942 145778976 -51416456 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1697 230 184 40 20 chr1 145778977 145779027 -51416405 - MT2B LTR ERVL -370 231 181 4 1697 21 57 0 0 chr1 145779189 145779224 -51416208 + AT_rich Low_complexity Low_complexity 1 35 0 4 1697 327 230 0 0 chr1 145779926 145780013 -51415419 + CT-rich Low_complexity Low_complexity 3 89 0 4 1697 195 129 0 0 chr1 145780689 145780720 -51414712 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1697 225 0 0 0 chr1 145780786 145780811 -51414621 + (CAA)n Simple_repeat Simple_repeat 1 25 0 4 1697 829 242 13 0 chr1 145780814 145780963 -51414469 + RSINE1 SINE B4 15 165 0 4 1697 414 0 0 0 chr1 145781604 145781650 -51413782 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1697 3332 54 15 0 chr1 145781924 145782316 -51413116 + L1_Mus1 LINE L1 6170 6567 0 4 1697 306 0 0 0 chr1 145782498 145782532 -51412900 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1697 234 0 0 0 chr1 145782532 145782557 -51412875 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1697 636 275 59 20 chr1 145782908 145783112 -51412320 + MTE2b LTR MaLR 168 379 0 5 1697 677 277 34 0 chr1 145783112 145783318 -51412114 + L1MC4 LINE L1 7176 7388 -654 5 1697 2896 286 53 47 chr1 145783333 145783413 -51412019 + Lx8 LINE L1 6328 6382 -1091 5 1697 904 226 108 0 chr1 145783413 145783599 -51411833 - B3 SINE B2 -10 206 1 5 1697 2896 286 53 47 chr1 145783599 145784537 -51410895 + Lx8 LINE L1 6383 7352 -121 5 1697 2508 171 10 17 chr1 145784561 145784978 -51410454 - MTC LTR MaLR 0 421 8 5 1697 432 0 0 0 chr1 145785101 145785149 -51410283 + (TATG)n Simple_repeat Simple_repeat 4 51 0 5 1697 2540 95 3 6 chr1 145786182 145786509 -51408923 - ORR1A2 LTR MaLR -1 326 1 5 1697 327 25 0 0 chr1 145789741 145789781 -51405651 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1697 3757 119 214 21 chr1 145791212 145791830 -51403602 - RMER19A LTR ERVK 0 737 1 5 1697 223 346 68 0 chr1 145792013 145792146 -51403286 + MIRb SINE MIR 2 143 -125 5 1697 270 260 108 16 chr1 145792159 145792288 -51403144 + L1MA6 LINE L1 5885 6025 -275 5 1697 310 293 42 3 chr1 145792339 145792467 -51402965 + L1MA6 LINE L1 6131 6272 -31 5 1697 23 0 0 0 chr1 145792572 145792595 -51402837 + AT_rich Low_complexity Low_complexity 1 23 0 5 1697 485 298 82 19 chr1 145792869 145793192 -51402240 - L1MA4 LINE L1 -123 6033 5703 5 1697 595 265 59 0 chr1 145793288 145793424 -51402008 - RSINE1 SINE B4 -19 146 3 5 1697 271 342 32 57 chr1 145794014 145794172 -51401260 - L3 LINE CR1 -2158 2331 2178 5 1697 34 20 0 19 chr1 145794769 145794790 -51400642 + AT_rich Low_complexity Low_complexity 1 21 0 5 1697 1007 231 5 14 chr1 145794790 145795005 -51400427 + B3 SINE B2 2 214 -2 5 1697 34 20 0 19 chr1 145795005 145795035 -51400397 + AT_rich Low_complexity Low_complexity 1 30 0 5 1697 307 284 0 13 chr1 145795050 145795125 -51400307 - ID2 SINE ID -4 79 6 5 1697 2349 112 14 29 chr1 145795466 145795814 -51399618 - Lx3_Mus LINE L1 0 7009 6667 5 1697 690 285 35 6 chr1 145796026 145796199 -51399233 + B3A SINE B2 5 182 -16 5 1697 342 270 103 46 chr1 145796556 145796750 -51398682 - LTR16C LTR ERVL 0 489 285 5 1697 275 290 96 11 chr1 145796877 145796971 -51398461 - LTR16C LTR ERVL -387 102 1 5 1697 207 346 144 30 chr1 145797088 145797386 -51398046 - L2 LINE L2 -348 3071 2740 5 1697 2487 203 109 67 chr1 145798203 145798668 -51396764 + RMER1C Other Other 579 1051 -291 5 1697 1110 99 7 0 chr1 145798668 145798810 -51396622 + B1_Mus1 SINE Alu 5 147 -1 5 1697 2487 203 109 67 chr1 145798810 145799066 -51396366 + RMER1C Other Other 1052 1331 -11 5 1697 192 77 0 0 chr1 145799068 145799094 -51396338 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1697 653 233 6 68 chr1 145799287 145799448 -51395984 + B3A SINE B2 1 151 -47 5 1697 363 78 0 0 chr1 145799449 145799500 -51395932 + (CAGG)n Simple_repeat Simple_repeat 1 51 0 5 1697 282 264 13 67 chr1 145799517 145799629 -51395803 + BC1_Mm scRNA scRNA 1 101 -51 5 1697 639 39 0 0 chr1 145799632 145799710 -51395722 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 5 1697 306 0 0 0 chr1 145801663 145801697 -51393735 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 5 1697 3197 249 17 17 chr1 145801700 145802396 -51393036 - Lx5 LINE L1 -16 7034 6339 5 1697 204 255 0 19 chr1 145802612 145802664 -51392768 + CT-rich Low_complexity Low_complexity 4 54 0 5 1697 308 271 10 77 chr1 145803241 145803362 -51392070 - MIR SINE MIR -136 132 14 5 1697 248 308 93 33 chr1 145804318 145804469 -51390963 - MIR SINE MIR -49 219 56 5 1697 1153 256 57 21 chr1 145804631 145804911 -51390521 - B4A SINE B4 -2 290 1 5 1697 183 339 165 29 chr1 145805274 145805444 -51389988 - L3 LINE CR1 -517 3972 3780 5 1697 671 166 25 0 chr1 145806310 145806467 -51388965 + GA-rich Low_complexity Low_complexity 1 161 0 5 1697 1603 314 20 33 chr1 145806638 145807248 -51388184 - Lx9 LINE L1 -195 7449 6848 5 1697 1684 121 75 66 chr1 145807251 145807569 -51387863 - ORR1A4 LTR MaLR -8 321 1 5 1697 1381 293 91 14 chr1 145807570 145808055 -51387377 - Lx9 LINE L1 -792 6852 6331 5 1697 493 268 93 16 chr1 145808403 145808585 -51386847 + RMER30 DNA MER1_type 7 202 0 5 1697 901 174 21 0 chr1 145809729 145809873 -51385559 - B1_Mus1 SINE Alu -1 147 1 5 1697 2761 123 37 12 chr1 145809896 145810300 -51385132 - Lx4A LINE L1 0 7058 6645 5 1697 180 241 117 33 chr1 145811167 145811227 -51384205 + MER5A DNA MER1_type 7 71 -118 5 1697 2027 172 34 67 chr1 145811486 145811872 -51383560 + ORR1C1 LTR MaLR 4 376 -2 5 1697 208 346 0 8 chr1 145812037 145812165 -51383267 + T-rich Low_complexity Low_complexity 2 128 0 5 1697 41822 10 4 6 chr1 145812090 145818766 -51376666 - L1Md_A LINE L1 0 6582 1 5 1697 6137 66 5 0 chr1 145818767 145819535 -51375897 - L1Md_F2 LINE L1 -31 6551 5780 5 1697 8183 54 3 1 chr1 145819514 145820601 -51374831 - L1Md_F2 LINE L1 0 6582 5494 5 1697 536 254 71 77 chr1 145820729 145820925 -51374507 + B3A SINE B2 1 195 -3 5 1697 510 218 137 0 chr1 145821154 145821278 -51374154 - B1_Mus1 SINE Alu -7 141 1 5 1697 568 262 21 28 chr1 145821448 145821593 -51373839 - B1_Mur1 SINE Alu -3 146 3 5 1697 496 343 77 50 chr1 145821904 145822202 -51373230 - MTEa LTR MaLR -71 308 3 5 1697 2626 49 6 39 chr1 145822260 145822598 -51372834 - L1_Mus1 LINE L1 0 6567 6241 5 1697 4552 161 16 2 chr1 145825105 145826064 -51369368 - Lx5 LINE L1 -997 6053 5077 5 1697 4272 215 67 14 chr1 145826062 145826922 -51368510 + Lx5 LINE L1 6070 6966 -84 5 1697 390 21 0 0 chr1 145826922 145826969 -51368463 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1697 4272 215 67 14 chr1 145826969 145827039 -51368393 + Lx5 LINE L1 6967 7048 -2 5 1697 182 319 31 71 chr1 145827075 145827173 -51368259 - MIRc SINE MIR -153 115 22 5 1697 939 120 95 0 chr1 145827282 145827440 -51367992 - B2_Mm2 SINE B2 -22 173 1 5 1697 353 253 67 0 chr1 145828399 145828474 -51366958 - ID4 SINE ID -1 82 3 5 1697 267 103 0 0 chr1 145829333 145829372 -51366060 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 1697 224 362 0 0 chr1 145829778 145829847 -51365585 - MIRc SINE MIR -107 161 93 5 1697 532 266 42 32 chr1 145829870 145830060 -51365372 - L1MC1 LINE L1 0 6333 6142 5 1697 317 222 25 56 chr1 145830200 145830362 -51365070 + (CAGAGA)n Simple_repeat Simple_repeat 4 160 0 5 1697 556 175 12 0 chr1 145830366 145830526 -51364906 + GA-rich Low_complexity Low_complexity 2 163 0 5 1697 204 154 0 0 chr1 145830525 145830577 -51364855 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1697 225 0 0 0 chr1 145830577 145830602 -51364830 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1697 719 333 94 84 chr1 145830718 145831325 -51364107 - RLTR18 LTR ERVK -3 613 1 5 1697 352 256 11 11 chr1 145831700 145831791 -51363641 + CT-rich Low_complexity Low_complexity 2 92 0 5 1697 512 244 29 44 chr1 145831796 145831933 -51363499 - B1F SINE Alu -5 144 10 5 1697 330 285 70 92 chr1 145831933 145832020 -51363412 - ID_B1 SINE B4 -1 219 1 5 1697 229 257 67 92 chr1 145832212 145832332 -51363100 + ORR1E LTR MaLR 79 195 -164 5 1697 358 285 48 48 chr1 145832699 145832909 -51362523 - L1MCa LINE L1 -2548 3773 3564 5 1697 1503 273 28 41 chr1 145833263 145833772 -51361660 + RMER5 LTR ERV1 33 534 0 5 1697 457 333 52 29 chr1 145834107 145834493 -51360939 - L1MCa LINE L1 -4620 1888 1494 5 1697 474 18 0 0 chr1 145834572 145834627 -51360805 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1697 648 97 0 0 chr1 145834695 145834788 -51360644 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 5 1697 1747 182 71 9 chr1 145835459 145835569 -51359863 + MTD LTR MaLR 1 110 -309 5 1697 884 9 0 9 chr1 145835569 145835675 -51359757 + (TTTCC)n Simple_repeat Simple_repeat 3 107 0 5 1697 1155 76 0 0 chr1 145835675 145835820 -51359612 - B1_Mus2 SINE Alu -2 145 1 5 1697 1747 182 71 9 chr1 145835820 145836046 -51359386 + MTD LTR MaLR 111 358 -61 5 1697 391 282 19 34 chr1 145836503 145836712 -51358720 + L1MD LINE L1 4965 5170 -976 5 1697 393 22 0 0 chr1 145836778 145836824 -51358608 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1697 513 113 0 0 chr1 145836827 145836898 -51358534 - BC1_Mm scRNA scRNA -80 72 2 5 1697 201 143 0 0 chr1 145837007 145837042 -51358390 + (C)n Simple_repeat Simple_repeat 1 35 0 5 1697 363 141 0 0 chr1 145838948 145839012 -51356420 + (CATA)n Simple_repeat Simple_repeat 2 65 0 5 1697 232 200 73 0 chr1 145839739 145839790 -51355642 + MTEb LTR MaLR 282 336 -43 5 1697 737 163 15 23 chr1 145839790 145839922 -51355510 - MTC LTR MaLR 0 421 291 5 1697 3892 181 43 20 chr1 145839923 145840813 -51354619 - MYSERV6-int LTR ERVK -194 8765 7856 5 1697 437 278 54 60 chr1 145840888 145841089 -51354343 - RMER4A LTR ERVK -28 557 251 5 1697 2264 288 51 84 chr1 145841096 145842489 -51352943 - MYSERV-int LTR ERVK -1427 5123 3777 5 1697 727 257 171 79 chr1 145843147 145843895 -51351537 + Lx9 LINE L1 6828 7644 0 5 1697 658 112 0 25 chr1 145844236 145844262 -51351170 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5 1697 1165 89 6 16 chr1 145844262 145844444 -51350988 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1697 658 112 0 25 chr1 145844444 145844536 -51350896 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 5 1697 21 0 0 0 chr1 145845826 145845847 -51349585 + AT_rich Low_complexity Low_complexity 1 21 0 5 1697 215 360 0 95 chr1 145846007 145846102 -51349330 + B1F SINE Alu 1 86 -63 5 1697 224 115 58 0 chr1 145846125 145846177 -51349255 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1697 249 159 0 0 chr1 145846257 145846301 -51349131 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 5 1697 542 15 15 0 chr1 145846335 145846402 -51349030 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1697 441 0 0 0 chr1 145850567 145850616 -51344816 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1697 222 118 0 0 chr1 145852976 145853010 -51342422 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1697 282 29 0 0 chr1 145854165 145854200 -51341232 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1697 257 135 19 0 chr1 145855319 145855371 -51340061 + T-rich Low_complexity Low_complexity 1 53 0 6 1697 239 203 17 0 chr1 145855484 145855543 -51339889 + CT-rich Low_complexity Low_complexity 2 61 0 6 1697 411 21 0 0 chr1 145855631 145855679 -51339753 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1697 2053 270 91 37 chr1 145856338 145857463 -51337969 - L1MC1 LINE L1 -32 6301 5136 6 1697 240 258 0 16 chr1 145857555 145857618 -51337814 + CT-rich Low_complexity Low_complexity 6 67 0 6 1697 189 154 0 0 chr1 145857619 145857658 -51337774 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 1697 216 184 0 0 chr1 145857681 145857730 -51337702 + (TCTG)n Simple_repeat Simple_repeat 1 49 0 6 1697 1163 272 56 26 chr1 145858395 145858701 -51336731 - MTE2a LTR MaLR -53 326 12 6 1697 279 282 0 23 chr1 145860159 145860246 -51335186 - MLT1H LTR MaLR -81 468 384 6 1697 351 0 0 0 chr1 145860890 145860929 -51334503 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1697 423 0 0 0 chr1 145860929 145860975 -51334457 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1697 336 200 0 0 chr1 145862213 145862283 -51333149 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 1697 22 0 0 0 chr1 145862290 145862312 -51333120 + AT_rich Low_complexity Low_complexity 1 22 0 6 1697 7296 65 8 1 chr1 145862497 145863559 -51331873 + L1_Mus2 LINE L1 5497 6566 0 6 1697 873 306 134 28 chr1 145864164 145864708 -51330724 - Lx8 LINE L1 -33 7440 6839 6 1697 580 265 0 13 chr1 145864714 145864863 -51330569 + Lx8 LINE L1 6707 6853 -620 6 1697 477 50 0 0 chr1 145866985 145867045 -51328387 + (CAAAG)n Simple_repeat Simple_repeat 2 61 0 6 1697 2384 200 15 49 chr1 145867209 145867741 -51327691 + RMER5 LTR ERV1 1 514 -20 6 1697 318 277 30 0 chr1 145868020 145868121 -51327311 - Lx7 LINE L1 -386 7310 7207 6 1697 4749 221 29 65 chr1 145868193 145869462 -51325970 - Lx6 LINE L1 -169 7291 6068 6 1697 321 26 0 0 chr1 145869835 145869873 -51325559 + (TCCA)n Simple_repeat Simple_repeat 2 39 0 6 1697 1957 339 94 52 chr1 145871150 145872246 -51323186 - MTE-int LTR MaLR -43 1537 396 6 1697 244 268 14 0 chr1 145872358 145872429 -51323003 - MTE-int LTR MaLR -1387 193 122 6 1697 245 328 52 124 chr1 145872974 145873127 -51322305 + B4A SINE B4 78 219 -73 6 1697 658 241 7 34 chr1 145872991 145873137 -51322295 + B1_Mur1 SINE Alu 8 149 0 6 1697 815 185 133 40 chr1 145873260 145873508 -51321924 + Lx4B LINE L1 6788 7058 0 6 1697 331 311 102 36 chr1 145873821 145873958 -51321474 - B1F1 SINE Alu -3 146 1 6 1697 216 350 59 105 chr1 145873958 145873974 -51321458 - B4 SINE B4 -70 222 77 6 1697 483 246 70 7 chr1 145874002 145874145 -51321287 - RMER15 LTR ERVL 0 575 424 6 1697 28 61 0 0 chr1 145874233 145874282 -51321150 + AT_rich Low_complexity Low_complexity 1 49 0 6 1697 726 216 123 26 chr1 145874286 145874481 -51320951 - B3 SINE B2 -1 215 2 6 1697 188 359 30 30 chr1 145875604 145875736 -51319696 - MIRc SINE MIR -7 261 130 6 1697 243 88 0 0 chr1 145875923 145875957 -51319475 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1697 258 32 0 0 chr1 145875964 145875995 -51319437 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1697 397 288 10 40 chr1 145876007 145876149 -51319283 - RSINE1 SINE B4 -24 141 4 6 1697 25 0 0 0 chr1 145876384 145876409 -51319023 + AT_rich Low_complexity Low_complexity 1 25 0 6 1697 22 70 0 0 chr1 145876446 145876489 -51318943 + AT_rich Low_complexity Low_complexity 1 43 0 6 1697 186 189 0 0 chr1 145876678 145876715 -51318717 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1697 24 53 0 0 chr1 145876762 145876800 -51318632 + AT_rich Low_complexity Low_complexity 1 38 0 6 1697 1281 226 102 0 chr1 145877189 145877494 -51317938 + ORR1D2 LTR MaLR 35 370 0 6 1697 21 36 0 0 chr1 145877593 145877621 -51317811 + AT_rich Low_complexity Low_complexity 1 28 0 6 1697 246 222 15 60 chr1 145878585 145878652 -51316780 + MER20 DNA MER1_type 4 67 -152 6 1697 604 278 122 29 chr1 145878884 145879088 -51316344 + ORR1D2 LTR MaLR 75 297 -73 6 1697 324 70 0 0 chr1 145879090 145879133 -51316299 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 6 1697 402 254 69 17 chr1 145879165 145879281 -51316151 + MER20 DNA MER1_type 98 219 0 6 1697 3720 158 69 60 chr1 145879452 145880155 -51315277 + RLTR40 LTR ERVK 32 730 -87 6 1697 744 65 0 0 chr1 145880155 145880262 -51315170 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 1697 3720 158 69 60 chr1 145880262 145880337 -51315095 + RLTR40 LTR ERVK 731 816 -1 6 1697 279 0 0 0 chr1 145881130 145881161 -51314271 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1697 1258 45 0 22 chr1 145881161 145881345 -51314087 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1697 3155 46 0 5 chr1 145881776 145882170 -51313262 - L1Md_F2 LINE L1 -1 6581 6190 6 1697 294 356 82 19 chr1 145882658 145882864 -51312568 - L2 LINE L2 -1390 2029 1811 6 1698 334 301 0 0 chr1 145883423 145883516 -51311916 - MER97c DNA MER1_type? -908 182 90 6 1698 7629 178 54 72 chr1 145883517 145884704 -51310728 - L1_Mur3 LINE L1 -1100 4780 3535 6 1698 266 125 206 130 chr1 145884704 145884725 -51310707 + MT2B LTR ERVL 153 251 -350 6 1698 350 169 338 0 chr1 145884725 145884796 -51310636 + B1_Mur4 SINE Alu 5 99 -51 6 1698 1047 93 0 34 chr1 145884806 145884984 -51310448 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 6 1698 7629 178 54 72 chr1 145884984 145885781 -51309651 - L1_Mur3 LINE L1 -2358 3522 2731 6 1698 437 160 0 0 chr1 145885781 145885856 -51309576 + ORR1C1 LTR MaLR 265 339 -39 6 1698 6846 40 11 7 chr1 145885856 145886711 -51308721 + L1Md_F3 LINE L1 5726 6583 -1 6 1698 437 71 0 0 chr1 145886733 145886789 -51308643 + ORR1C1 LTR MaLR 312 367 0 6 1698 1120 139 84 3 chr1 145886789 145887159 -51308273 - L1_Mur3 LINE L1 -4382 1498 1108 6 1698 237 65 0 0 chr1 145887166 145887197 -51308235 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 6 1698 6411 137 27 6 chr1 145887254 145888369 -51307063 - L1_Mur2 LINE L1 -28 5849 4712 6 1698 841 248 16 0 chr1 145888396 145888646 -51306786 - L1_Mur3 LINE L1 -6615 1113 860 6 1698 1379 284 33 14 chr1 145888641 145889368 -51306064 - L1_Mur3 LINE L1 -7052 676 19 6 1698 2732 278 87 56 chr1 145889377 145890595 -51304837 - Lx8 LINE L1 -458 7015 5756 6 1698 339 25 0 0 chr1 145890595 145890635 -51304797 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1698 2732 272 37 96 chr1 145890635 145891154 -51304278 - Lx8 LINE L1 -1718 5755 5193 6 1698 3392 25 5 2 chr1 145891174 145891567 -51303865 - MTA_Mm LTR MaLR 0 396 3 6 1698 2189 147 84 13 chr1 145891681 145892074 -51303358 + MTC LTR MaLR 1 421 0 6 1698 341 148 12 0 chr1 145892106 145892187 -51303245 + CT-rich Low_complexity Low_complexity 1 82 0 6 1698 1108 270 63 89 chr1 145892597 145892979 -51302453 - MTE2a LTR MaLR -7 372 1 6 1698 32873 82 9 4 chr1 145893228 145899487 -51295945 + L1Md_F2 LINE L1 273 6549 -33 6 1698 247 270 116 62 chr1 145899486 145899632 -51295800 - Lx8 LINE L1 -1286 6187 6034 6 1698 582 15 0 0 chr1 145899676 145899743 -51295689 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1698 744 231 0 0 chr1 145899989 145900119 -51295313 + B3 SINE B2 2 131 -85 6 1698 1169 113 45 6 chr1 145900124 145900302 -51295130 - B2_Mm2 SINE B2 -9 186 2 6 1698 441 0 0 0 chr1 145900336 145900385 -51295047 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1698 532 242 105 26 chr1 145900385 145900538 -51294894 + B3 SINE B2 52 216 0 6 1698 213 294 0 0 chr1 145900766 145900817 -51294615 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1698 332 245 86 0 chr1 145900834 145900929 -51294503 - B1F2 SINE Alu -36 113 1 6 1698 480 35 0 0 chr1 145900930 145900988 -51294444 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1698 370 305 0 79 chr1 145900990 145901104 -51294328 - B1F1 SINE Alu -7 110 6 6 1698 236 302 55 28 chr1 145901407 145901516 -51293916 + MLT1F1 LTR MaLR 7 118 -451 6 1698 267 294 0 0 chr1 145901942 145902010 -51293422 - ID4 SINE ID -13 70 3 6 1698 341 310 0 45 chr1 145902040 145902128 -51293304 - PB1D10 SINE Alu -10 107 24 6 1698 183 156 0 0 chr1 145903388 145903420 -51292012 + CT-rich Low_complexity Low_complexity 1 32 0 6 1698 210 71 0 0 chr1 145903457 145903485 -51291947 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1698 1909 22 4 0 chr1 145903612 145903838 -51291594 + L1Md_A LINE L1 6356 6582 0 6 1698 648 269 26 36 chr1 145903903 145903919 -51291513 - B3A SINE B2 -6 192 182 6 1698 582 54 0 0 chr1 145903919 145903993 -51291439 + (TATG)n Simple_repeat Simple_repeat 4 77 0 6 1698 648 269 26 36 chr1 145903993 145904169 -51291263 - B3A SINE B2 -17 181 2 6 1698 468 0 0 0 chr1 145904784 145904836 -51290596 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1698 431 214 12 8 chr1 145905876 145905964 -51289468 - PB1D10 SINE Alu -45 72 1 6 1698 1012 161 120 5 chr1 145906023 145906223 -51289209 - URR1B DNA MER1_type 0 225 3 6 1698 240 111 0 0 chr1 145907447 145907492 -51287940 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1698 26 30 0 0 chr1 145907662 145907695 -51287737 + AT_rich Low_complexity Low_complexity 1 33 0 6 1698 22 0 0 0 chr1 145907753 145907775 -51287657 + AT_rich Low_complexity Low_complexity 1 22 0 6 1698 1143 62 14 0 chr1 145907778 145907923 -51287509 - B1_Mm SINE Alu 0 147 1 6 1698 610 234 15 30 chr1 145907923 145908045 -51287387 + B1_Mur1 SINE Alu 19 141 -8 6 1698 363 23 0 0 chr1 145908045 145908089 -51287343 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1698 273 188 0 0 chr1 145908141 145908221 -51287211 + A-rich Low_complexity Low_complexity 1 80 0 6 1698 286 304 113 28 chr1 145908906 145909048 -51286384 + ID_B1 SINE B4 1 154 -70 6 1698 241 318 36 78 chr1 145909314 145909481 -51285951 + RMER4B LTR ERVK 25 184 -401 6 1698 199 318 116 18 chr1 145909723 145909835 -51285597 + MIRc SINE MIR 36 158 -110 6 1698 334 318 270 25 chr1 145909832 145910470 -51284962 - L2 LINE L2 -811 2608 1815 6 1698 31 82 0 0 chr1 145910701 145910774 -51284658 + AT_rich Low_complexity Low_complexity 1 73 0 6 1698 342 0 0 0 chr1 145910918 145910956 -51284476 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1698 243 0 0 0 chr1 145910956 145910982 -51284450 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1698 534 331 42 42 chr1 145911052 145911500 -51283932 + L1MA6 LINE L1 5581 6028 -272 6 1698 351 0 0 0 chr1 145911677 145911716 -51283716 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1698 714 325 58 15 chr1 145911972 145912297 -51283135 - Charlie13a DNA Charlie -584 930 592 7 1698 36912 5 0 1 chr1 145912388 145917769 -51277663 + L1Md_A LINE L1 208 5586 -297 7 1698 9041 4 0 0 chr1 145917769 145918765 -51276667 + L1Md_A LINE L1 5587 6582 0 7 1698 273 242 0 0 chr1 145918876 145918938 -51276494 + L1M3 LINE L1 5708 5769 -420 7 1698 234 346 37 0 chr1 145920952 145920981 -51274451 - PB1D7 SINE Alu -31 89 6 7 1698 235 289 0 0 chr1 145920981 145921033 -51274399 - B4A SINE B4 -150 142 91 7 1698 310 129 9 0 chr1 145922231 145922287 -51273145 + B2_Mm2 SINE B2 2 61 -132 7 1698 1987 92 26 10 chr1 145922295 145922604 -51272828 + Lx LINE L1 6340 6653 -1 7 1698 186 338 14 0 chr1 145926040 145926114 -51269318 + MIR SINE MIR 123 197 -65 7 1698 315 226 34 45 chr1 145926275 145926352 -51269080 + PB1D7 SINE Alu 34 112 -8 7 1698 222 37 0 0 chr1 145926352 145926379 -51269053 + (CAACC)n Simple_repeat Simple_repeat 5 31 0 7 1698 405 0 0 0 chr1 145926916 145926961 -51268471 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1698 546 188 0 0 chr1 145926962 145927132 -51268300 + GA-rich Low_complexity Low_complexity 2 171 0 7 1698 627 213 136 8 chr1 145927199 145927369 -51268063 + B3 SINE B2 1 193 0 7 1698 23 68 0 0 chr1 145927400 145927444 -51267988 + AT_rich Low_complexity Low_complexity 1 44 0 7 1698 293 274 66 18 chr1 145927453 145927671 -51267761 + L1M4b LINE L1 1902 2213 -4889 7 1698 553 98 44 9 chr1 145927889 145928002 -51267430 + Lx3B LINE L1 6054 6170 -803 7 1698 6341 68 9 36 chr1 145928019 145928908 -51266524 - L1_Mus3 LINE L1 0 6638 5774 7 1698 6312 125 10 8 chr1 145928910 145930516 -51264916 + Lx LINE L1 5040 6654 0 7 1698 3855 116 61 35 chr1 145930528 145931180 -51264252 + Lx3B LINE L1 6295 6963 -10 7 1698 225 0 0 0 chr1 145931180 145931205 -51264227 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 7 1698 665 230 0 23 chr1 145931817 145931946 -51263486 - B3 SINE B2 -90 126 1 7 1698 395 68 17 0 chr1 145932629 145932688 -51262744 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 7 1698 468 0 0 0 chr1 145933277 145933329 -51262103 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1698 243 0 0 0 chr1 145933657 145933684 -51261748 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 1698 363 18 54 0 chr1 145933996 145934052 -51261380 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1698 384 22 0 0 chr1 145934109 145934154 -51261278 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1698 836 240 48 40 chr1 145934165 145934417 -51261015 - Lx7 LINE L1 -67 7629 7376 7 1698 8939 89 17 21 chr1 145934879 145936906 -51258526 - Lx3B LINE L1 0 6973 4958 7 1698 25 0 0 0 chr1 145937117 145937142 -51258290 + AT_rich Low_complexity Low_complexity 1 25 0 7 1698 6231 11 0 0 chr1 145938246 145938982 -51256450 + L1Md_T LINE L1 4851 5586 -297 7 1698 8511 30 0 0 chr1 145938982 145939978 -51255454 + L1Md_T LINE L1 5587 6582 0 7 1698 254 304 19 19 chr1 145940078 145940182 -51255250 + CT-rich Low_complexity Low_complexity 1 104 0 7 1698 1060 302 58 8 chr1 145940190 145940584 -51254848 - Lx8 LINE L1 -371 7102 6689 7 1698 230 70 51 34 chr1 145941187 145941246 -51254186 + T-rich Low_complexity Low_complexity 5 64 0 7 1698 5397 203 92 17 chr1 145941337 145941636 -51253796 - Lx7 LINE L1 0 7696 7387 7 1698 333 0 0 0 chr1 145941636 145941673 -51253759 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1698 5397 203 92 17 chr1 145941673 145942635 -51252797 - Lx7 LINE L1 -310 7386 6343 7 1698 189 0 0 0 chr1 145942863 145942884 -51252548 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1698 192 77 0 0 chr1 145942930 145942956 -51252476 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1698 298 344 78 54 chr1 145943638 145943767 -51251665 - B1F2 SINE Alu -1 148 17 7 1698 1066 108 0 0 chr1 145943931 145944070 -51251362 + B1_Mus1 SINE Alu 1 139 -9 7 1698 315 0 0 0 chr1 145944070 145944105 -51251327 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1698 522 0 0 0 chr1 145944129 145944187 -51251245 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1698 212 325 250 25 chr1 145944834 145945030 -51250402 - L2a LINE L2 -147 3279 3040 7 1698 312 120 0 0 chr1 145945471 145945521 -51249911 + (CAG)n Simple_repeat Simple_repeat 1 50 0 7 1698 654 239 22 7 chr1 145946880 145947015 -51248417 + MTE2b LTR MaLR 3 139 -240 7 1698 855 293 23 4 chr1 145947578 145947835 -51247597 - Lx8 LINE L1 -479 6994 6733 7 1698 1779 220 124 13 chr1 145948448 145948973 -51246459 - Lx7 LINE L1 -329 7367 6785 7 1698 1377 185 28 14 chr1 145949040 145949325 -51246107 + Lx7 LINE L1 7408 7696 0 7 1698 4298 164 53 12 chr1 145950100 145951078 -51244354 - Lx5 LINE L1 -525 6525 5494 7 1698 1935 175 53 103 chr1 145951785 145952327 -51243105 + Lx5 LINE L1 6533 7047 -3 7 1698 50 0 0 0 chr1 145953418 145953468 -51241964 + AT_rich Low_complexity Low_complexity 1 50 0 7 1698 7768 71 32 2 chr1 145953468 145954513 -51240919 - Lx3_Mus LINE L1 0 7009 5934 7 1698 879 155 11 6 chr1 145954522 145954697 -51240735 + CT-rich Low_complexity Low_complexity 3 178 0 7 1698 236 36 0 0 chr1 145954697 145954725 -51240707 + (TTC)n Simple_repeat Simple_repeat 2 29 0 7 1698 1452 28 0 0 chr1 145954748 145954925 -51240507 + L1_Mur1 LINE L1 4898 5074 -812 7 1698 518 277 257 12 chr1 145955381 145955622 -51239810 - MLT2B1 LTR ERVL -63 457 158 7 1698 686 171 39 52 chr1 145955622 145955776 -51239656 - ORR1D1 LTR MaLR 0 384 233 7 1698 418 182 30 0 chr1 145955777 145955867 -51239565 - Lx5 LINE L1 -346 6704 6625 7 1698 326 184 0 55 chr1 145955921 145956030 -51239402 + GA-rich Low_complexity Low_complexity 2 104 0 7 1698 715 229 14 120 chr1 145956032 145956240 -51239192 - ORR1D1 LTR MaLR -188 186 1 7 1698 1272 269 3 3 chr1 145956619 145956921 -51238511 - Lx5 LINE L1 -3 7047 6746 7 1698 485 64 0 60 chr1 145956930 145957013 -51238419 + (T)n Simple_repeat Simple_repeat 1 78 0 7 1698 5123 19 0 0 chr1 145957016 145957594 -51237838 + L1Md_F2 LINE L1 5992 6569 -13 7 1698 3192 70 0 0 chr1 145957607 145958007 -51237425 - L1_Mus1 LINE L1 -9 6558 6159 7 1698 236 264 19 0 chr1 145958066 145958119 -51237313 + ID4_ SINE ID 2 55 -28 7 1698 701 191 8 0 chr1 145958119 145958250 -51237182 - Lx5 LINE L1 -308 6742 6611 7 1698 22 0 0 0 chr1 145958447 145958469 -51236963 + AT_rich Low_complexity Low_complexity 1 22 0 7 1698 272 260 68 0 chr1 145958794 145958867 -51236565 + ID4 SINE ID 2 79 -4 7 1698 1338 224 79 3 chr1 145959011 145959351 -51236081 - ORR1D2 LTR MaLR 0 370 5 7 1698 320 241 9 0 chr1 145959440 145959556 -51235876 + (CA)n Simple_repeat Simple_repeat 2 118 0 7 1698 4800 148 20 113 chr1 145960488 145961218 -51234214 - RMER19B LTR ERVK 0 902 198 7 1698 1048 54 0 8 chr1 145961218 145961348 -51234084 - B1_Mus1 SINE Alu -19 129 1 7 1698 4800 148 20 113 chr1 145961348 145961611 -51233821 - RMER19B LTR ERVK -705 197 1 7 1698 594 265 15 0 chr1 145961986 145962122 -51233310 + B1F SINE Alu 1 138 -11 7 1698 531 0 0 0 chr1 145962138 145962197 -51233235 + (CAAAC)n Simple_repeat Simple_repeat 5 63 0 7 1698 630 307 0 57 chr1 145963562 145963738 -51231694 - MTEa LTR MaLR -162 217 52 7 1698 4402 214 82 103 chr1 145963757 145964164 -51231268 - Lx9 LINE L1 0 7644 7311 7 1698 258 105 0 0 chr1 145964164 145964202 -51231230 + (TAG)n Simple_repeat Simple_repeat 3 40 0 7 1698 318 67 0 0 chr1 145964210 145964255 -51231177 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1698 4402 214 82 103 chr1 145964255 145965342 -51230090 - Lx9 LINE L1 -334 7310 6173 7 1698 441 201 89 44 chr1 145965337 145965472 -51229960 - Lx9 LINE L1 -1624 6020 5880 7 1698 273 227 0 29 chr1 145965502 145965570 -51229862 - MTEa LTR MaLR -313 66 1 7 1698 309 290 96 11 chr1 145966987 145967081 -51228351 - RSINE1 SINE B4 -61 104 3 7 1698 390 203 14 0 chr1 145967805 145967879 -51227553 - B1_Mus1 SINE Alu -63 85 11 7 1698 334 273 153 134 chr1 145968196 145968450 -51226982 - ORR1E LTR MaLR -3 356 98 7 1698 1977 128 15 24 chr1 145968848 145969176 -51226256 + ORR1A2 LTR MaLR 1 325 -2 7 1698 8658 139 114 23 chr1 145969176 145970817 -51224615 + ORR1A2-int LTR MaLR 1 1792 0 7 1698 2304 113 3 0 chr1 145970817 145971143 -51224289 + ORR1A2 LTR MaLR 1 327 0 7 1698 414 313 153 24 chr1 145971861 145972027 -51223405 - L2 LINE L2 -429 2990 2792 7 1698 506 54 14 0 chr1 145972027 145972101 -51223331 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1698 414 313 153 24 chr1 145972101 145972183 -51223249 - L2 LINE L2 -628 2791 2710 7 1698 198 0 0 0 chr1 145972388 145972410 -51223022 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 7 1698 2787 56 3 0 chr1 145972955 145973297 -51222135 + ORR1A1 LTR MaLR 4 346 0 7 1698 862 150 7 39 chr1 145973353 145973506 -51221926 - B1_Mur2 SINE Alu 0 149 2 7 1698 51 0 0 0 chr1 145973816 145973867 -51221565 + AT_rich Low_complexity Low_complexity 1 51 0 7 1698 693 150 6 84 chr1 145974018 145974185 -51221247 + L1_Mur2 LINE L1 5208 5361 -516 7 1698 1206 214 91 107 chr1 145974261 145974691 -51220741 + Lx5 LINE L1 6624 7046 -4 7 1698 4958 115 52 15 chr1 145975517 145976305 -51219127 - Lx LINE L1 0 6654 5838 7 1698 3014 132 9 53 chr1 145976305 145976849 -51218583 + Lx LINE L1 5350 5869 -14 7 1698 320 336 17 0 chr1 145977874 145977990 -51217442 - L1M2 LINE L1 -1264 4879 4762 7 1698 568 296 107 28 chr1 145978081 145978461 -51216971 + L1MB1 LINE L1 5755 6161 -7 7 1698 649 342 9 40 chr1 145978970 145979004 -51216428 - MTE2a LTR MaLR -1 378 347 7 1698 2054 89 17 0 chr1 145979004 145979297 -51216135 + Lx3_Mus LINE L1 6712 7009 0 7 1698 649 330 34 117 chr1 145979297 145979592 -51215840 - MTE2a LTR MaLR -44 375 117 7 1698 19112 20 2 1 chr1 145979598 145982608 -51212824 - L1Md_A LINE L1 -1 6581 3568 7 1698 314 22 0 62 chr1 145982750 145982798 -51212634 + (CTATA)n Simple_repeat Simple_repeat 1 45 0 7 1698 207 0 0 0 chr1 145983072 145983095 -51212337 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1698 207 255 0 0 chr1 145983211 145983258 -51212174 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1698 290 286 57 0 chr1 145983262 145983332 -51212100 - B4A SINE B4 -5 287 214 7 1698 550 316 113 0 chr1 145983354 145983531 -51211901 - B3 SINE B2 -17 199 3 7 1698 369 273 11 0 chr1 145983531 145983610 -51211822 - B4A SINE B4 -58 234 155 7 1698 1399 304 96 49 chr1 145983647 145984598 -51210834 - Lx9 LINE L1 -997 6647 5653 7 1698 346 154 30 15 chr1 145984601 145984667 -51210765 + L1_Rod LINE L1 3898 3964 -1883 7 1698 240 297 13 16 chr1 145984685 145984776 -51210656 + PB1D10 SINE Alu 18 109 -40 7 1698 632 289 39 39 chr1 145984822 145984977 -51210455 + RSINE1 SINE B4 3 157 -8 8 1698 1242 82 20 35 chr1 145988278 145988314 -51207118 + L1Md_F2 LINE L1 6383 6418 -164 8 1698 5697 75 50 99 chr1 145988314 145989253 -51206179 - RLTR13B1 LTR ERVK 0 893 1 8 1698 1242 82 20 35 chr1 145989253 145989418 -51206014 + L1Md_F2 LINE L1 6419 6581 -1 8 1698 1602 137 29 7 chr1 145990459 145990732 -51204700 + Lx4A LINE L1 6780 7058 0 8 1698 351 0 0 0 chr1 145990743 145990782 -51204650 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1698 456 158 0 0 chr1 145991189 145991284 -51204148 + (CCCTAA)n Simple_repeat Simple_repeat 2 96 0 8 1698 2135 136 37 11 chr1 145991445 145991824 -51203608 + RLTR11B LTR ERVK 1 389 -64 8 1698 1578 79 5 5 chr1 145992198 145992414 -51203018 - L1_Mus2 LINE L1 0 6566 6351 8 1698 1023 9 0 0 chr1 145992880 145992996 -51202436 + (TCTCCC)n Simple_repeat Simple_repeat 3 118 0 8 1698 9170 124 81 24 chr1 145992996 145996329 -51199103 - Lx3A LINE L1 -8 6973 3269 8 1698 1069 192 20 36 chr1 145996376 145996677 -51198755 - Lx3A LINE L1 -6670 314 3 8 1698 279 0 0 0 chr1 145997116 145997147 -51198285 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1698 315 0 0 0 chr1 145997380 145997415 -51198017 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1698 21 36 0 0 chr1 145998118 145998146 -51197286 + AT_rich Low_complexity Low_complexity 1 28 0 8 1698 206 265 192 25 chr1 145999727 145999847 -51195585 + L2 LINE L2 1710 1849 -1570 8 1698 381 314 22 16 chr1 145999847 145999992 -51195440 - B4 SINE B4 -38 254 107 8 1698 2846 147 22 12 chr1 146000001 146000511 -51194921 + RMER6A LTR ERVK 242 756 0 1 1698 917 287 48 68 chr1 146000528 146001437 -51193995 - L1MA5 LINE L1 -429 6573 5676 2 1698 258 32 0 0 chr1 146001439 146001470 -51193962 + (ATGGTG)n Simple_repeat Simple_repeat 2 32 0 3 1698 378 74 0 0 chr1 146001493 146001547 -51193885 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1698 387 280 24 56 chr1 146001605 146001855 -51193577 - L1MA5 LINE L1 -1313 5532 5291 2 1698 343 229 25 33 chr1 146001875 146001997 -51193435 - L1MA5 LINE L1 -3285 3560 3440 2 1698 1215 235 25 63 chr1 146001983 146002358 -51193074 - Lx2B LINE L1 -6 6991 6593 5 1698 1053 206 20 0 chr1 146002356 146002560 -51192872 + Lx2 LINE L1 5495 5702 -184 6 1698 5186 7 3 0 chr1 146002549 146003139 -51192293 + L1Md_T LINE L1 4995 5586 -297 7 1698 8441 33 0 0 chr1 146003139 146004135 -51191297 + L1Md_T LINE L1 5587 6582 0 7 1698 3085 232 112 7 chr1 146004137 146004953 -51190479 + Lx2 LINE L1 5693 6593 -404 6 1698 356 294 53 6 chr1 146004959 146005130 -51190302 - L1MA5 LINE L1 -3384 3461 3283 2 1698 519 164 56 32 chr1 146005240 146005366 -51190066 + RLTR22_Mur LTR ERVK 1696 1824 -24 8 1698 878 139 0 0 chr1 146005369 146005506 -51189926 - L1_Mus3 LINE L1 -709 5174 5038 9 1698 7622 89 12 8 chr1 146005505 146006940 -51188492 + L1_Mus3 LINE L1 5196 6638 0 9 1698 962 293 70 10 chr1 146006971 146007454 -51187978 - L1MA5 LINE L1 -4006 2843 2332 2 1698 477 262 0 0 chr1 146007496 146007660 -51187772 + (CA)n Simple_repeat Simple_repeat 2 165 0 1 1698 214 361 0 0 chr1 146007664 146007725 -51187707 - ID4 SINE ID -8 75 15 1 1698 2652 184 109 5 chr1 146008889 146009454 -51185978 + Lx9 LINE L1 6501 7124 -520 1 1698 686 94 8 30 chr1 146009454 146009586 -51185846 + L1Md_F2 LINE L1 6454 6582 0 1 1698 934 285 26 3 chr1 146009586 146009899 -51185533 - RLTR6-int LTR ERV1 -135 7643 7324 1 1698 338 50 83 0 chr1 146010011 146010071 -51185361 - RMER16-int LTR ERVK -1706 3700 3636 1 1698 1480 217 154 13 chr1 146010082 146010531 -51184901 + Lx9 LINE L1 7119 7630 -14 1 1698 1143 35 14 7 chr1 146011208 146011353 -51184079 - B1_Mm SINE Alu 0 147 2 1 1698 671 165 162 17 chr1 146011765 146011923 -51183509 - Lx2 LINE L1 -2 6995 6830 1 1698 327 216 17 8 chr1 146011991 146012108 -51183324 + CT-rich Low_complexity Low_complexity 1 118 0 1 1699 4357 35 0 6 chr1 146015474 146015993 -51179439 + L1Md_T LINE L1 6067 6582 0 1 1699 3481 76 6 11 chr1 146016843 146017320 -51178112 - L1_Mus3 LINE L1 -5 6633 6159 2 1699 202 224 0 0 chr1 146017329 146017378 -51178054 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 1699 211 281 110 0 chr1 146017901 146017983 -51177449 + PB1D7 SINE Alu 28 118 -2 2 1699 894 85 8 8 chr1 146018178 146018309 -51177123 + L1_Mus2 LINE L1 6436 6566 0 2 1699 251 231 93 62 chr1 146018905 146019002 -51176430 - L3 LINE CR1 -139 4350 4251 2 1699 378 0 0 0 chr1 146019143 146019185 -51176247 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1699 369 58 0 0 chr1 146019300 146019352 -51176080 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2 1699 279 296 50 30 chr1 146019365 146019466 -51175966 - L3 LINE CR1 -132 4357 4255 2 1699 225 323 21 84 chr1 146020815 146021012 -51174420 + MIR SINE MIR 10 191 -17 2 1699 551 131 12 0 chr1 146023300 146023384 -51172048 - BC1_Mm scRNA scRNA -67 85 1 2 1699 204 382 0 0 chr1 146024918 146024986 -51170446 - L3 LINE CR1 -492 3997 3930 3 1699 210 37 0 0 chr1 146025005 146025032 -51170400 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1699 808 249 66 8 chr1 146025160 146025419 -51170013 - Lx9 LINE L1 -1675 5969 5696 3 1699 300 340 41 65 chr1 146026528 146026698 -51168734 - L1MEd LINE L1 -5458 661 496 3 1699 624 250 68 6 chr1 146026841 146027002 -51168430 - B3A SINE B2 -25 173 3 3 1699 369 0 0 0 chr1 146027020 146027061 -51168371 + (TATG)n Simple_repeat Simple_repeat 4 44 0 3 1699 201 74 0 0 chr1 146027069 146027096 -51168336 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 3 1699 713 215 0 8 chr1 146027123 146027254 -51168178 - B3 SINE B2 -86 130 1 3 1699 261 292 27 34 chr1 146027613 146027762 -51167670 + (TATATG)n Simple_repeat Simple_repeat 5 152 0 3 1699 632 324 64 15 chr1 146027790 146028056 -51167376 - B4A SINE B4 -12 280 2 3 1699 272 48 24 0 chr1 146028435 146028477 -51166955 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1699 329 237 10 70 chr1 146031604 146031704 -51163728 + MER45A DNA Tip100 72 165 -13 4 1699 185 261 22 0 chr1 146032135 146032181 -51163251 + MIRm SINE MIR 100 146 -130 4 1699 974 301 38 15 chr1 146033361 146033555 -51161877 - B4A SINE B4 0 292 93 4 1699 185 0 0 39 chr1 146033555 146033581 -51161851 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4 1699 974 301 38 15 chr1 146033581 146033652 -51161780 - B4A SINE B4 -200 92 21 4 1699 587 51 13 0 chr1 146037903 146037982 -51157450 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1699 1136 34 7 0 chr1 146038023 146038172 -51157260 + (CA)n Simple_repeat Simple_repeat 2 151 0 4 1699 1306 82 43 11 chr1 146038294 146038479 -51156953 + B2_Mm2 SINE B2 5 195 0 4 1699 3816 73 10 6 chr1 146039025 146039548 -51155884 + Lx3_Mus LINE L1 6479 7003 -6 4 1699 470 308 9 0 chr1 146039653 146039760 -51155672 + RSINE1 SINE B4 44 151 -14 4 1699 430 206 64 21 chr1 146040250 146040344 -51155088 + MTE2b LTR MaLR 1 98 -281 5 1699 503 294 73 12 chr1 146040317 146040482 -51154950 + MTE2b LTR MaLR 27 201 -178 5 1699 30 45 0 0 chr1 146040883 146040927 -51154505 + AT_rich Low_complexity Low_complexity 1 44 0 5 1699 398 306 72 7 chr1 146041042 146041180 -51154252 + ID_B1 SINE B4 1 147 -77 5 1699 457 139 0 0 chr1 146041245 146041317 -51154115 + RLTR20B1 LTR ERVK 1 72 -488 5 1699 1334 156 59 21 chr1 146041316 146041457 -51153975 + RLTR20B1 LTR ERVK 319 472 -91 5 1699 284 0 28 0 chr1 146041457 146041493 -51153939 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1699 1334 156 59 21 chr1 146041493 146041587 -51153845 + RLTR20B1 LTR ERVK 473 563 0 5 1699 681 131 28 0 chr1 146041901 146042008 -51153424 + B1_Mus1 SINE Alu 39 148 0 5 1699 657 96 0 0 chr1 146042171 146042265 -51153167 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 5 1699 842 241 21 16 chr1 146042281 146042471 -51152961 - B3 SINE B2 -6 210 20 5 1699 665 305 66 62 chr1 146042475 146042929 -51152503 - Lx8 LINE L1 -1202 6271 5816 5 1699 212 361 12 0 chr1 146042929 146042941 -51152491 - ID_B1 SINE B4 -60 164 82 5 1699 218 329 57 0 chr1 146042941 146043011 -51152421 - B1F SINE Alu -75 74 1 6 1699 1425 177 8 4 chr1 146043230 146043496 -51151936 + Lx LINE L1 6374 6640 -14 6 1699 3444 46 30 0 chr1 146043493 146043931 -51151501 + L1Md_F3 LINE L1 6133 6583 -1 6 1699 333 297 7 66 chr1 146044248 146044385 -51151047 - MIR3 SINE MIR -38 170 42 6 1699 659 324 14 5 chr1 146044498 146044712 -51150720 - ID_B1 SINE B4 -7 217 2 6 1699 421 191 0 18 chr1 146045849 146045961 -51149471 + (TG)n Simple_repeat Simple_repeat 2 111 0 6 1699 183 394 39 39 chr1 146046277 146046380 -51149052 + MIR SINE MIR 5 107 -155 6 1699 745 70 17 17 chr1 146046657 146046774 -51148658 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 6 1699 221 384 0 0 chr1 146046774 146046847 -51148585 - RSINE1 SINE B4 -5 160 88 6 1699 184 377 13 13 chr1 146047236 146047314 -51148118 - MIR SINE MIR -152 110 33 6 1699 219 277 64 61 chr1 146048114 146048250 -51147182 - MIRc SINE MIR -62 200 63 7 1699 1310 83 38 19 chr1 146049035 146049245 -51146187 + L1_Mus3 LINE L1 6417 6630 -8 7 1699 582 86 0 0 chr1 146049259 146049340 -51146092 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1699 366 162 0 0 chr1 146049340 146049414 -51146018 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1699 1139 278 90 21 chr1 146050852 146051231 -51144201 - MTD LTR MaLR -14 405 1 7 1699 263 29 0 0 chr1 146051768 146051802 -51143630 + L1Md_F2 LINE L1 6530 6563 -19 7 1699 288 0 0 0 chr1 146051804 146051836 -51143596 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1699 879 160 0 0 chr1 146054547 146054703 -51140729 + CT-rich Low_complexity Low_complexity 4 159 0 7 1699 2073 140 20 17 chr1 146054714 146055071 -51140361 - Lx LINE L1 -21 6633 6276 7 1699 4191 109 116 10 chr1 146055112 146055787 -51139645 - Lx LINE L1 -2 6652 5907 7 1699 6535 125 8 2 chr1 146055780 146056917 -51138515 + Lx LINE L1 4812 5957 -679 7 1699 23 0 0 0 chr1 146057383 146057406 -51138026 + AT_rich Low_complexity Low_complexity 1 23 0 8 1699 212 337 36 0 chr1 146057537 146057620 -51137812 + MIR SINE MIR 20 105 -157 8 1699 324 0 0 0 chr1 146057830 146057866 -51137566 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1699 222 342 134 10 chr1 146058211 146058412 -51137020 - MIRb SINE MIR -38 230 5 8 1699 208 320 51 0 chr1 146058588 146058666 -51136766 + L2a LINE L2 3328 3409 -17 8 1699 988 260 67 43 chr1 146059132 146059478 -51135954 - MLT2C1 LTR ERVL -40 357 4 8 1699 4086 105 2 0 chr1 146063459 146064077 -51131355 - L1_Mm LINE L1 -1115 4768 4150 8 1699 237 33 0 0 chr1 146064600 146064630 -51130802 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1699 225 309 134 56 chr1 146064706 146064922 -51130510 + Charlie4a DNA MER1_type 16 248 -260 8 1699 35 0 0 0 chr1 146065126 146065161 -51130271 + AT_rich Low_complexity Low_complexity 1 35 0 8 1699 1241 316 102 15 chr1 146065188 146065936 -51129496 - Lx8 LINE L1 -29 7444 6632 9 1699 3757 62 10 4 chr1 146065936 146066436 -51128996 + RLTR1C LTR ERV1 1 503 0 9 1699 1049 70 0 27 chr1 146066809 146066955 -51128477 + B1_Mm SINE Alu 1 142 -5 9 1699 621 0 0 0 chr1 146066976 146067045 -51128387 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 9 1699 1222 212 89 45 chr1 146067527 146067818 -51127614 + MTD LTR MaLR 116 419 0 9 1699 563 314 0 28 chr1 146067818 146067959 -51127473 + B1F SINE Alu 12 148 -1 9 1699 503 241 56 0 chr1 146068039 146068147 -51127285 + PB1D9 SINE Alu 1 114 -6 9 1699 502 254 44 44 chr1 146071381 146071517 -51123915 + RNERVK23-int LTR ERVK 7067 7202 -204 9 1699 464 0 0 0 chr1 146071909 146071964 -51123468 - tRNA-Lys-AAG tRNA tRNA 0 76 22 9 1699 824 333 21 21 chr1 146072326 146072842 -51122590 + RLTR6-int LTR ERV1 7151 7666 -112 9 1699 1147 290 0 0 chr1 146072505 146072843 -51122589 + RNERVK23-int LTR ERVK 7411 7748 -469 9 1699 3176 164 20 7 chr1 146072951 146073511 -51121921 + ETnERV2-int LTR ERVK 6493 7059 -347 1 1699 287 258 30 0 chr1 146073531 146073597 -51121835 + PB1D10 SINE Alu 49 116 -1 1 1699 350 371 135 27 chr1 146073903 146074163 -51121269 - LTR16A LTR ERVL -159 292 5 1 1699 277 225 22 0 chr1 146076111 146076200 -51119232 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1 1699 664 291 58 29 chr1 146076224 146076532 -51118900 - RMER5 LTR ERV1 -158 376 60 1 1699 473 297 64 6 chr1 146077029 146077185 -51118247 + MTEa LTR MaLR 6 170 -209 1 1699 867 199 113 10 chr1 146077186 146077389 -51118043 - URR1B DNA MER1_type -1 224 1 1 1699 298 297 44 0 chr1 146077526 146077617 -51117815 + MTEa LTR MaLR 276 370 -9 1 1699 408 39 0 0 chr1 146077787 146077832 -51117600 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1699 531 0 0 0 chr1 146077832 146077891 -51117541 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1 1699 408 39 0 0 chr1 146077891 146077897 -51117535 + (GA)n Simple_repeat Simple_repeat 2 7 0 1 1699 225 167 0 0 chr1 146078044 146078098 -51117334 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1699 439 336 63 44 chr1 146078101 146078260 -51117172 - RSINE1 SINE B4 0 165 4 1 1699 330 26 0 0 chr1 146078265 146078304 -51117128 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1699 1154 54 0 13 chr1 146078304 146078453 -51116979 - B1_Mm SINE Alu 0 147 1 1 1699 7313 74 30 15 chr1 146078913 146080604 -51114828 + L1Md_F LINE L1 515 2233 -3650 1 1699 1826 97 15 7 chr1 146080604 146080875 -51114557 + L1Md_F2 LINE L1 6309 6581 -1 1 1699 23 0 0 0 chr1 146081635 146081658 -51113774 + AT_rich Low_complexity Low_complexity 1 23 0 1 1699 602 258 144 94 chr1 146081710 146082009 -51113423 - MTEb LTR MaLR -65 314 1 1 1699 712 104 95 22 chr1 146082220 146082357 -51113075 + L1Md_F2 LINE L1 5440 5586 -297 1 1699 7837 54 0 26 chr1 146082357 146083377 -51112055 + L1Md_F2 LINE L1 5587 6579 -3 1 1699 261 310 89 25 chr1 146083449 146083684 -51111748 + L1_Rod LINE L1 1631 1880 -3967 1 1699 500 345 18 12 chr1 146084027 146084194 -51111238 + B4A SINE B4 1 168 -124 1 1699 243 184 20 20 chr1 146084463 146084513 -51110919 + CT-rich Low_complexity Low_complexity 3 52 0 1 1699 192 97 0 0 chr1 146086064 146086095 -51109337 + (CAAAC)n Simple_repeat Simple_repeat 3 33 0 1 1699 2043 289 119 9 chr1 146086181 146087027 -51108405 - Lx8 LINE L1 -220 7253 6315 1 1699 355 300 11 11 chr1 146087044 146087135 -51108297 - B3 SINE B2 -125 91 1 1 1699 396 302 46 24 chr1 146087213 146087605 -51107827 - Lx8 LINE L1 -1529 6167 5761 1 1699 1562 230 84 9 chr1 146087623 146088087 -51107345 - Lx8 LINE L1 -894 4986 4488 1 1699 3112 72 0 0 chr1 146088129 146088529 -51106903 + MTB LTR MaLR 1 400 0 1 1699 2842 110 48 56 chr1 146088923 146089424 -51106008 + Lx LINE L1 6158 6654 0 1 1699 1469 166 68 25 chr1 146091352 146091717 -51103715 - Lx9 LINE L1 0 7644 7264 1 1699 22 35 0 0 chr1 146091928 146091957 -51103475 + AT_rich Low_complexity Low_complexity 1 29 0 1 1699 385 251 124 70 chr1 146094574 146094775 -51100657 - B3 SINE B2 -1 215 4 1 1699 231 221 78 69 chr1 146095024 146095126 -51100306 + Charlie10 DNA MER1_type 1361 1463 -1359 1 1699 236 281 18 0 chr1 146095462 146095519 -51099913 - B4 SINE B4 -147 145 88 1 1699 486 61 0 0 chr1 146096418 146096484 -51098948 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1699 23 33 0 0 chr1 146098170 146098200 -51097232 + AT_rich Low_complexity Low_complexity 1 30 0 1 1699 439 309 84 25 chr1 146098421 146098720 -51096712 - Lx7 LINE L1 -1804 5892 5573 1 1699 191 36 36 0 chr1 146098720 146098748 -51096684 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1 1699 439 311 135 19 chr1 146098748 146098929 -51096503 - Lx7 LINE L1 -712 5588 5362 1 1699 253 333 0 0 chr1 146099455 146099548 -51095884 - L1MC1 LINE L1 -148 6185 6093 1 1699 2383 52 9 27 chr1 146099551 146099888 -51095544 + RLTR10 LTR ERVK 1 331 -59 1 1699 705 77 36 110 chr1 146099902 146100048 -51095384 + RLTR10 LTR ERVK 259 387 -3 1 1699 7595 56 2 2 chr1 146100093 146101079 -51094353 + RLTR10-int LTR ERVK 13 998 -989 1 1699 250 297 39 15 chr1 146101143 146101273 -51094159 + RLTR10-int LTR ERVK 1462 1594 -5987 1 1699 8148 31 2 2 chr1 146101355 146102353 -51093079 + RLTR10-int LTR ERVK 990 1987 0 1 1699 2563 42 13 196 chr1 146102353 146102827 -51092605 + RLTR10 LTR ERVK 1 387 -3 1 1699 566 316 0 62 chr1 146102917 146103096 -51092336 - ID_B1 SINE B4 -29 195 28 1 1699 201 139 0 0 chr1 146103099 146103142 -51092290 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1699 212 326 36 57 chr1 146103465 146103605 -51091827 - L2c LINE L2 -2 3385 3249 1 1699 7701 139 28 24 chr1 146104840 146106214 -51089218 + Lx4A LINE L1 5679 7058 0 1 1699 375 276 8 16 chr1 146106205 146106334 -51089098 - Lx6 LINE L1 -16 7444 7317 1 1699 3819 207 51 14 chr1 146106648 146107516 -51087916 + Lx7 LINE L1 6439 7338 -358 1 1699 674 239 21 46 chr1 146107501 146107742 -51087690 + Lx7 LINE L1 7460 7694 -2 1 1699 567 53 0 0 chr1 146108081 146108156 -51087276 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1699 266 0 0 29 chr1 146108256 146108291 -51087141 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1699 232 27 54 0 chr1 146108972 146109009 -51086423 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1699 1240 100 55 6 chr1 146109125 146109306 -51086126 - B2_Mm2 SINE B2 -4 191 2 1 1699 629 291 60 30 chr1 146109712 146109978 -51085454 - Lx8 LINE L1 -4 7469 7196 1 1699 1710 224 44 5 chr1 146110030 146110497 -51084935 - RMER1B Other Other -240 826 259 1 1699 357 377 98 25 chr1 146111171 146111677 -51083755 + L2a LINE L2 2853 3399 -27 1 1699 246 130 174 0 chr1 146111942 146111988 -51083444 - L2a LINE L2 -1 3425 3372 1 1699 213 39 0 0 chr1 146112790 146112816 -51082616 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1699 2511 96 96 5 chr1 146113566 146113771 -51081661 - BGLII LTR ERVK 0 421 182 1 1699 312 27 0 0 chr1 146113771 146113808 -51081624 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1699 2511 96 96 5 chr1 146113808 146113988 -51081444 - BGLII LTR ERVK -240 181 1 1 1699 2138 215 58 2 chr1 146113988 146114506 -51080926 - Lx9 LINE L1 -55 7589 7043 1 1699 405 219 0 12 chr1 146114505 146114588 -51080844 + Lx9 LINE L1 6581 6662 -982 1 1699 25 0 0 0 chr1 146114601 146114626 -51080806 + AT_rich Low_complexity Low_complexity 1 25 0 1 1699 630 111 0 0 chr1 146114626 146114716 -51080716 - Lx LINE L1 -182 6472 6383 1 1699 1453 294 39 14 chr1 146114736 146115171 -51080261 - MTEa-int LTR MaLR -1018 562 117 1 1699 373 284 58 19 chr1 146115195 146115299 -51080133 - B4 SINE B4 -183 109 2 1 1699 350 380 0 0 chr1 146115299 146115428 -51080004 - MTEa-int LTR MaLR -1451 129 1 1 1699 909 273 163 4 chr1 146115439 146115715 -51079717 - MTEa LTR MaLR -12 367 48 1 1699 377 302 30 48 chr1 146116016 146116183 -51079249 + RNLTR23 LTR ERVK 479 642 0 1 1699 1630 282 49 48 chr1 146116635 146117284 -51078148 - Lx8 LINE L1 0 7473 6824 1 1699 220 321 141 14 chr1 146118430 146118572 -51076860 - MIRc SINE MIR -107 161 2 1 1699 282 216 0 0 chr1 146118871 146118945 -51076487 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1699 1090 259 113 0 chr1 146118946 146119220 -51076212 - MTE2b LTR MaLR -74 305 1 1 1699 387 0 0 0 chr1 146119529 146119572 -51075860 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1699 306 0 0 0 chr1 146119572 146119605 -51075827 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1699 782 92 32 56 chr1 146119817 146119943 -51075489 + B1_Mus1 SINE Alu 26 148 0 1 1699 237 33 0 0 chr1 146119957 146119987 -51075445 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1699 315 0 0 0 chr1 146119987 146120021 -51075411 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1699 203 200 0 0 chr1 146120424 146120459 -51074973 + A-rich Low_complexity Low_complexity 1 35 0 1 1699 262 254 57 4 chr1 146120787 146120880 -51074552 + ID4_ SINE ID 1 98 -54 1 1699 363 23 0 0 chr1 146120880 146120924 -51074508 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1699 432 0 0 0 chr1 146120968 146121016 -51074416 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1699 24 32 0 0 chr1 146121130 146121161 -51074271 + AT_rich Low_complexity Low_complexity 1 31 0 1 1699 2719 173 33 16 chr1 146121715 146122138 -51073294 + L1_Mur2 LINE L1 892 1321 -5765 1 1699 340 61 0 0 chr1 146122138 146122187 -51073245 + L1_Mus2 LINE L1 6518 6566 0 1 1699 3088 166 27 25 chr1 146122187 146122853 -51072579 + L1_Mur2 LINE L1 1304 1927 -1987 1 1699 3313 142 170 6 chr1 146122853 146123483 -51071949 + RMER19A LTR ERVK 1 733 -4 1 1699 3088 164 27 18 chr1 146123483 146123533 -51071899 + L1_Mur2 LINE L1 1928 1973 -3904 1 1699 2425 151 37 82 chr1 146123553 146123716 -51071716 + RLTR20A LTR ERVK 1 161 -380 1 1699 441 0 0 0 chr1 146123716 146123765 -51071667 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1699 216 0 0 0 chr1 146123765 146123788 -51071644 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1699 2425 151 37 82 chr1 146123788 146124098 -51071334 + RLTR20A LTR ERVK 162 452 -89 1 1699 390 21 0 0 chr1 146124098 146124145 -51071287 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1699 2425 151 37 82 chr1 146124145 146124181 -51071251 + RLTR20A LTR ERVK 453 487 -54 1 1699 330 26 0 0 chr1 146124222 146124261 -51071171 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1699 1952 190 20 35 chr1 146124286 146124445 -51070987 + L1_Mur2 LINE L1 2050 2204 -3673 1 1699 276 30 0 0 chr1 146124445 146124478 -51070954 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1699 1952 190 20 35 chr1 146124478 146124770 -51070662 + L1_Mur2 LINE L1 2205 2494 -3383 1 1699 330 194 0 0 chr1 146124776 146124843 -51070589 - MusHAL1 LINE L1 -428 2284 2218 1 1699 5168 211 38 40 chr1 146124828 146126115 -51069317 + Lx5 LINE L1 5759 7046 -4 1 1699 25 0 0 0 chr1 146126115 146126140 -51069292 + AT_rich Low_complexity Low_complexity 1 25 0 1 1699 606 266 216 40 chr1 146127258 146127536 -51067896 + RLTR28B LTR ERVL 17 343 -138 1 1699 1349 298 99 11 chr1 146127693 146128402 -51067030 + Lx5 LINE L1 6455 7433 -27 1 1699 29 28 0 0 chr1 146128416 146128452 -51066980 + AT_rich Low_complexity Low_complexity 1 36 0 1 1699 2898 204 26 91 chr1 146128471 146129142 -51066290 - Lx7 LINE L1 -1 7695 7069 1 1699 5492 109 22 65 chr1 146129142 146130084 -51065348 - RLTR13D6 LTR ERVK 0 902 1 1 1699 2898 204 26 91 chr1 146130084 146130259 -51065173 - Lx7 LINE L1 -628 7068 6904 1 1699 503 345 27 7 chr1 146130259 146130408 -51065024 - B3 SINE B2 -5 211 60 1 1699 12417 131 12 15 chr1 146130935 146133676 -51061756 + L1VL4 LINE L1 174 2903 -656 1 1699 1383 134 8 8 chr1 146133668 146133923 -51061509 + L1_Mus3 LINE L1 4684 4938 -945 1 1699 30918 82 26 7 chr1 146133933 146139894 -51055538 - L1Md_T LINE L1 -11 6571 510 1 1699 6516 121 12 16 chr1 146139897 146141175 -51054257 + L1_Mus3 LINE L1 5362 6632 -6 1 1699 2088 8 0 0 chr1 146141500 146141737 -51053695 + L1Md_T LINE L1 6346 6582 0 1 1699 822 317 18 4 chr1 146141957 146142185 -51053247 + B4 SINE B4 1 231 -61 2 1699 188 35 35 0 chr1 146142475 146142504 -51052928 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2 1699 455 331 0 61 chr1 146142679 146142827 -51052605 + RSINE1 SINE B4 5 143 -22 2 1699 470 216 80 18 chr1 146143744 146143857 -51051575 - ID_B1 SINE B4 -7 217 98 2 1699 405 256 127 8 chr1 146143857 146143870 -51051562 - B1F SINE Alu -7 142 2 2 1699 435 133 0 0 chr1 146144008 146144083 -51051349 - Lx2 LINE L1 -15 6982 6908 2 1699 265 281 79 6 chr1 146144134 146144299 -51051133 - L1_Mur3 LINE L1 -1537 4343 4167 2 1699 1151 68 7 0 chr1 146144303 146144449 -51050983 + B1_Mm SINE Alu 1 147 0 2 1699 240 158 0 0 chr1 146144450 146144507 -51050925 + A-rich Low_complexity Low_complexity 1 57 0 2 1699 483 48 0 0 chr1 146144538 146144600 -51050832 + (TCC)n Simple_repeat Simple_repeat 3 64 0 2 1699 751 276 38 4 chr1 146144600 146144840 -51050592 - L1_Rod LINE L1 -1732 4115 3868 2 212 442 319 34 132 chr1 146145261 146145496 -51049936 + B3A SINE B2 5 216 0 2 1700 696 360 67 11 chr1 146146111 146146482 -51048950 - MER67B LTR ERV1 -268 393 2 2 1700 244 364 26 65 chr1 146147925 146148078 -51047354 - L2b LINE L2 -181 3194 3048 2 1700 220 362 35 63 chr1 146148770 146148944 -51046488 - L2c LINE L2 -153 3234 3066 2 1700 526 314 13 6 chr1 146149212 146149369 -51046063 + RSINE1 SINE B4 2 159 -6 2 1700 23 33 0 0 chr1 146149407 146149437 -51045995 + AT_rich Low_complexity Low_complexity 1 30 0 2 1700 7039 121 22 22 chr1 146149890 146150879 -51044553 - Lx3B LINE L1 -1 6972 5973 2 1700 2954 51 53 5 chr1 146150879 146151257 -51044175 + MTA_Mm LTR MaLR 1 396 0 2 1700 7039 121 22 22 chr1 146151257 146151423 -51044009 - Lx3B LINE L1 -1001 5972 5817 2 1700 44 20 0 0 chr1 146151568 146151619 -51043813 + AT_rich Low_complexity Low_complexity 1 51 0 2 1700 1933 291 122 28 chr1 146151620 146151956 -51043476 - Lx9 LINE L1 -126 7518 7145 2 1700 225 0 0 0 chr1 146151956 146151981 -51043451 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1700 412 59 29 0 chr1 146151981 146152048 -51043384 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1700 1933 291 122 28 chr1 146152048 146152668 -51042764 - Lx9 LINE L1 -500 7144 6480 2 1700 228 35 0 0 chr1 146152668 146152697 -51042735 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1700 1933 311 107 29 chr1 146152697 146153397 -51042035 - Lx9 LINE L1 -1165 6479 5608 2 1700 195 292 15 30 chr1 146154251 146154318 -51041114 + L2 LINE L2 426 491 -2928 2 1700 216 0 0 0 chr1 146154806 146154830 -51040602 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 2 1700 257 323 0 132 chr1 146155857 146155971 -51039461 + MER20 DNA MER1_type 2 100 -119 2 1700 354 308 30 98 chr1 146156346 146156433 -51038999 + PB1 SINE Alu 2 83 -44 2 1700 537 178 127 0 chr1 146156433 146156551 -51038881 + B1_Mur4 SINE Alu 5 137 -13 2 1700 297 0 0 0 chr1 146156552 146156585 -51038847 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1700 354 308 30 98 chr1 146156585 146156628 -51038804 + PB1 SINE Alu 84 125 -2 2 1700 244 347 3 0 chr1 146156648 146156730 -51038702 + ID4 SINE ID 4 86 -66 2 1700 2164 309 31 36 chr1 146157956 146158928 -51036504 - Lx9 LINE L1 -179 7465 6499 2 1700 218 119 0 23 chr1 146159588 146159631 -51035801 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 2 1700 442 355 68 73 chr1 146159792 146160245 -51035187 + L2a LINE L2 2941 3391 -35 2 1700 22 0 0 0 chr1 146160440 146160462 -51034970 + AT_rich Low_complexity Low_complexity 1 22 0 2 1700 234 0 0 0 chr1 146160945 146160971 -51034461 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1700 290 62 42 0 chr1 146161298 146161346 -51034086 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 2 1700 220 319 68 42 chr1 146161424 146161542 -51033890 + B3A SINE B2 5 125 -73 2 1700 408 97 0 0 chr1 146161566 146161628 -51033804 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1700 473 291 78 17 chr1 146161722 146161953 -51033479 + L2 LINE L2 2050 2294 -1125 2 1700 316 347 95 49 chr1 146162147 146162411 -51033021 + L2 LINE L2 2613 2888 -531 2 1700 233 222 192 64 chr1 146162583 146162708 -51032724 - MLT1A0 LTR MaLR -8 357 217 2 1700 243 0 0 0 chr1 146163039 146163066 -51032366 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1700 1151 70 0 0 chr1 146163070 146163212 -51032220 - B1_Mus1 SINE Alu -6 142 1 2 1700 255 375 0 0 chr1 146163212 146163276 -51032156 + ID4_ SINE ID 6 69 -14 2 1700 426 20 0 0 chr1 146163939 146163990 -51031442 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1700 283 379 24 30 chr1 146164043 146164209 -51031223 - MLT1A1 LTR MaLR -61 347 183 2 1700 191 359 139 14 chr1 146164218 146164427 -51031005 - L2 LINE L2 -925 2494 2260 2 1700 213 354 158 0 chr1 146165439 146165521 -51029911 - MIRm SINE MIR -162 114 20 2 1700 34060 46 0 3 chr1 146168038 146173522 -51021910 + L1Md_T LINE L1 28 5589 -297 2 1700 8064 35 19 2 chr1 146173522 146174490 -51020942 + L1Md_T LINE L1 5590 6573 -12 2 1700 775 322 18 60 chr1 146175137 146175418 -51020014 + B4A SINE B4 1 269 -23 2 1700 202 150 0 24 chr1 146176310 146176351 -51019081 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1700 201 39 0 0 chr1 146176558 146176584 -51018848 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2 1700 222 37 0 0 chr1 146177106 146177133 -51018299 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1700 890 67 7 43 chr1 146178048 146178189 -51017243 + L1_Mus1 LINE L1 6432 6567 0 2 1700 324 0 0 0 chr1 146178538 146178574 -51016858 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 1700 4220 110 27 6 chr1 146178574 146179205 -51016227 - Lx3A LINE L1 -15 6966 6323 2 1700 999 175 5 0 chr1 146179281 146179475 -51015957 - Lx4B LINE L1 -369 6689 6495 2 1700 366 279 95 9 chr1 146179605 146179710 -51015722 - ID_B1 SINE B4 0 224 111 2 1700 960 129 0 0 chr1 146180341 146180481 -51014951 + B1_Mus1 SINE Alu 3 142 -6 2 1700 302 0 0 26 chr1 146180482 146180521 -51014911 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1700 261 75 0 0 chr1 146180522 146180562 -51014870 + (CCAA)n Simple_repeat Simple_repeat 1 40 0 2 1700 774 211 122 16 chr1 146180838 146181026 -51014406 + B3 SINE B2 8 215 -1 2 1700 251 279 9 88 chr1 146181641 146181755 -51013677 + Lx9 LINE L1 6979 7083 -561 2 1700 1321 175 117 147 chr1 146181764 146182200 -51013232 + RLTR23 LTR ERV1 8 430 0 2 1700 252 0 0 0 chr1 146182672 146182700 -51012732 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1700 519 282 113 29 chr1 146183248 146183584 -51011848 + RLTR6-int LTR ERV1 1099 1716 -6062 2 1700 503 279 12 52 chr1 146183902 146184152 -51011280 + RLTR6-int LTR ERV1 1818 2057 -2633 2 1700 920 191 16 37 chr1 146184574 146184764 -51010668 + RLTR23 LTR ERV1 242 427 -3 2 1700 739 277 142 56 chr1 146184769 146185289 -51010143 + Lx9 LINE L1 7080 7644 0 2 1700 3078 42 48 0 chr1 146185740 146186118 -51009314 + MTA_Mm LTR MaLR 1 396 0 2 1700 2207 257 86 6 chr1 146186495 146187165 -51008267 + RMER1C Other Other 593 1317 -25 2 1700 1262 50 0 0 chr1 146187165 146187325 -51008107 + L1_Mus1 LINE L1 6396 6555 -12 2 1700 557 168 11 0 chr1 146187651 146187746 -51007686 + MTD LTR MaLR 269 364 -55 2 1700 237 233 17 0 chr1 146187977 146187996 -51007436 + (CATATA)n Simple_repeat Simple_repeat 5 23 0 2 1700 261 0 0 0 chr1 146187996 146188025 -51007407 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1700 265 200 67 0 chr1 146188025 146188131 -51007301 + (TA)n Simple_repeat Simple_repeat 1 113 0 2 1700 239 246 33 0 chr1 146188292 146188353 -51007079 - MER5A1 DNA MER1_type -54 112 50 2 1700 597 40 0 0 chr1 146188812 146188888 -51006544 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 2 1700 816 141 0 0 chr1 146188890 146189025 -51006407 + (TCCC)n Simple_repeat Simple_repeat 4 138 0 2 1700 578 53 13 0 chr1 146189025 146189101 -51006331 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 2 1700 2890 54 52 0 chr1 146189204 146189573 -51005859 + RLTR10 LTR ERVK 1 388 -2 2 1700 181 305 218 25 chr1 146189607 146189846 -51005586 + L2a LINE L2 2690 2974 -445 2 1700 183 335 132 34 chr1 146189860 146190095 -51005337 + L2a LINE L2 3027 3284 -142 2 1700 282 250 37 24 chr1 146190743 146190825 -51004607 - MTD LTR MaLR -336 83 1 2 1700 184 167 0 0 chr1 146191152 146191188 -51004244 + MIRm SINE MIR 235 270 -6 2 1700 24 32 0 0 chr1 146191355 146191386 -51004046 + AT_rich Low_complexity Low_complexity 1 31 0 2 1700 183 170 0 0 chr1 146191491 146191538 -51003894 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1700 7211 79 7 4 chr1 146192835 146194073 -51001359 - L1_Mus1 LINE L1 -1 6566 5328 2 1700 266 206 15 0 chr1 146194071 146194139 -51001293 + L1_Mm LINE L1 4888 4956 -927 2 1700 32643 81 15 1 chr1 146194117 146200080 -50995352 - L1Md_F2 LINE L1 -1 6581 532 2 1700 378 0 0 0 chr1 146200159 146200201 -50995231 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1700 321 290 54 76 chr1 146200854 146201223 -50994209 - L1ME2 LINE L1 -17 6147 5787 2 1700 743 328 118 22 chr1 146201226 146201643 -50993789 - MLT2C2 LTR ERVL -2 462 6 2 1700 323 343 27 20 chr1 146201677 146201823 -50993609 + MLT1B LTR MaLR 40 186 -204 2 1700 398 317 52 58 chr1 146201864 146202038 -50993394 + MLT1B LTR MaLR 182 354 -36 2 1700 863 301 135 46 chr1 146202236 146202800 -50992632 + MER44D DNA MER2_type 68 681 -24 2 1700 313 304 80 0 chr1 146202882 146203007 -50992425 - L1ME2 LINE L1 -699 5465 5331 2 1700 414 57 0 0 chr1 146203030 146203083 -50992349 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1700 525 311 191 35 chr1 146203092 146203438 -50991994 - MLT1C LTR MaLR -65 402 3 2 1700 28 95 0 0 chr1 146203521 146203605 -50991827 + AT_rich Low_complexity Low_complexity 1 84 0 2 1700 433 329 109 43 chr1 146203612 146203961 -50991471 - L1ME2 LINE L1 -1214 4932 4561 2 1700 440 132 65 11 chr1 146203999 146204091 -50991341 - Lx8 LINE L1 -639 6834 6738 2 1700 2176 216 92 114 chr1 146204268 146204425 -50991007 - Lx7 LINE L1 -3 7693 7513 2 1700 222 62 0 0 chr1 146204425 146204457 -50990975 + (CAAAT)n Simple_repeat Simple_repeat 2 33 0 2 1700 2176 216 92 114 chr1 146204457 146205134 -50990298 - Lx7 LINE L1 -184 7512 6878 2 1700 398 80 0 5 chr1 146205135 146205200 -50990232 + B1_Mur4 SINE Alu 57 149 -1 2 1700 591 53 0 0 chr1 146205202 146205277 -50990155 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1700 6986 186 40 48 chr1 146205294 146206271 -50989161 - L1_Mur3 LINE L1 -2876 3004 2057 3 1700 333 0 0 0 chr1 146206271 146206308 -50989124 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1700 315 0 0 0 chr1 146206310 146206345 -50989087 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1700 6986 186 40 48 chr1 146206345 146207049 -50988383 - L1_Mur3 LINE L1 -3824 2056 1350 3 1700 1137 61 0 20 chr1 146207049 146207199 -50988233 - B1_Mus2 SINE Alu 0 147 1 3 1700 6986 185 87 9 chr1 146207199 146207561 -50987871 - L1_Mur3 LINE L1 -4531 1349 963 3 1700 33148 68 14 2 chr1 146207565 146213352 -50982080 - L1Md_F3 LINE L1 0 6587 634 3 1700 1772 224 117 47 chr1 146213350 146213973 -50981459 - L1_Mur3 LINE L1 -6749 979 313 3 1700 2057 79 36 19 chr1 146214066 146214374 -50981058 - L1_Mus3 LINE L1 -5 6633 6321 3 1700 220 0 56 28 chr1 146215390 146215426 -50980006 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1700 1120 71 0 14 chr1 146215426 146215561 -50979871 - B1_Mus2 SINE Alu -11 136 2 3 1700 1046 261 77 12 chr1 146215693 146216019 -50979413 - MLT1B LTR MaLR 0 390 44 3 1700 276 149 0 0 chr1 146216188 146216235 -50979197 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1700 323 346 96 62 chr1 146216457 146216842 -50978590 + L1MC4 LINE L1 7528 7925 -117 3 1700 402 139 0 0 chr1 146216842 146216914 -50978518 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1700 8781 45 2 1 chr1 146217292 146218425 -50977007 - L1Md_F2 LINE L1 0 6582 5457 3 1700 4150 40 2 0 chr1 146218425 146218919 -50976513 - L1Md_T LINE L1 -1 6581 6087 3 1700 8781 59 12 12 chr1 146218919 146219673 -50975759 - L1Md_F2 LINE L1 -427 5456 4694 3 1700 26 0 0 0 chr1 146219700 146219726 -50975706 + AT_rich Low_complexity Low_complexity 1 26 0 3 1700 653 63 0 10 chr1 146219754 146219850 -50975582 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1700 981 218 42 0 chr1 146219997 146220213 -50975219 - Lx4A LINE L1 0 7058 6834 3 1700 2806 198 55 27 chr1 146220214 146220418 -50975014 + RLTR20B3 LTR ERVK 1 219 -358 3 1700 727 49 0 28 chr1 146220418 146220524 -50974908 + (GGA)n Simple_repeat Simple_repeat 3 105 0 3 1700 195 42 0 0 chr1 146220526 146220550 -50974882 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1700 2806 198 55 27 chr1 146220550 146220903 -50974529 + RLTR20B3 LTR ERVK 220 574 -3 3 1700 3806 121 40 2 chr1 146220903 146221509 -50973923 - Lx4A LINE L1 -220 6838 6210 3 1700 2222 113 6 0 chr1 146221503 146221856 -50973576 - L1_Mur2 LINE L1 -530 5347 4993 3 1700 9399 107 20 7 chr1 146221867 146223711 -50971721 - L1_Mur2 LINE L1 -3064 2813 948 3 1700 377 269 73 122 chr1 146223726 146224095 -50971337 + RMER17C LTR ERVK 1 351 -59 3 1700 328 335 73 73 chr1 146225238 146225249 -50970183 + L1M5 LINE L1 2884 2893 -3253 3 1700 878 248 19 14 chr1 146225249 146225462 -50969970 + ID_B1 SINE B4 2 215 -9 3 1700 328 335 73 73 chr1 146225462 146225682 -50969750 + L1M5 LINE L1 2894 3115 -3031 3 1700 706 67 87 0 chr1 146225766 146225870 -50969562 - B2_Mm2 SINE B2 -81 114 2 3 1700 21 0 0 0 chr1 146226261 146226282 -50969150 + AT_rich Low_complexity Low_complexity 1 21 0 3 1700 579 195 0 0 chr1 146226419 146226542 -50968890 + (TA)n Simple_repeat Simple_repeat 1 123 0 3 1700 375 304 0 0 chr1 146226558 146226637 -50968795 - RSINE1 SINE B4 -62 103 25 3 1700 33 0 0 0 chr1 146226691 146226724 -50968708 + AT_rich Low_complexity Low_complexity 1 33 0 3 1700 21 71 0 0 chr1 146227127 146227169 -50968263 + AT_rich Low_complexity Low_complexity 1 42 0 3 1700 21 71 0 0 chr1 146227182 146227224 -50968208 + AT_rich Low_complexity Low_complexity 1 42 0 3 1700 414 188 86 0 chr1 146227416 146227533 -50967899 - Lx2 LINE L1 0 6997 6871 3 1700 43 56 0 0 chr1 146227654 146227725 -50967707 + AT_rich Low_complexity Low_complexity 1 71 0 3 1700 564 265 80 0 chr1 146228296 146228447 -50966985 + RSINE1 SINE B4 3 165 0 3 1700 225 260 0 0 chr1 146228449 146228553 -50966879 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1700 287 322 16 16 chr1 146228563 146228669 -50966763 + MTE-int LTR MaLR 1422 1527 -53 3 1700 453 276 25 84 chr1 146228669 146228871 -50966561 + ORR1E LTR MaLR 1 190 -169 3 1700 783 189 240 41 chr1 146228927 146229219 -50966213 + Lx2B LINE L1 6650 6999 -1 3 1700 672 167 48 0 chr1 146229325 146229451 -50965981 + ORR1B1 LTR MaLR 1 132 -262 3 1700 4786 91 84 111 chr1 146229466 146230095 -50965337 + RLTR13B1 LTR ERVK 1 604 -289 3 1700 2301 52 59 3 chr1 146230095 146230401 -50965031 - L1Md_F3 LINE L1 -14 6570 6248 3 1700 4786 91 84 111 chr1 146230401 146230689 -50964743 + RLTR13B1 LTR ERVK 605 893 0 3 1700 999 152 133 67 chr1 146230694 146230709 -50964723 + ORR1B1 LTR MaLR 139 159 -235 3 1700 387 0 0 0 chr1 146230709 146230752 -50964680 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1700 999 152 133 67 chr1 146230752 146230976 -50964456 + ORR1B1 LTR MaLR 160 394 0 3 1700 2472 97 121 36 chr1 146231179 146231617 -50963815 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1700 54403 16 6 2 chr1 146231627 146238047 -50957385 + IAPEz-int LTR ERVK 35 6481 0 3 1700 2462 102 101 36 chr1 146238047 146238493 -50956939 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1700 302 211 137 27 chr1 146238576 146238649 -50956783 + B4 SINE B4 196 276 -16 3 1700 366 23 0 0 chr1 146238667 146238710 -50956722 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1700 369 0 0 0 chr1 146238710 146238750 -50956682 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1700 374 298 114 20 chr1 146239524 146239726 -50955706 - Lx9 LINE L1 -140 7504 7284 3 1700 239 387 16 0 chr1 146239736 146239860 -50955572 + L2 LINE L2 2692 2817 -602 3 1700 1794 156 22 3 chr1 146239860 146240175 -50955257 - Lx2B LINE L1 -910 6090 5770 3 1700 411 180 0 0 chr1 146240169 146240219 -50955213 + Lx2B LINE L1 6460 6497 -139 3 1700 222 37 0 0 chr1 146240219 146240246 -50955186 + (TGGG)n Simple_repeat Simple_repeat 2 28 0 3 1700 626 140 1 9 chr1 146240246 146240363 -50955069 + Lx2B LINE L1 6883 6997 -3 3 1700 344 297 0 11 chr1 146240642 146240734 -50954698 + CT-rich Low_complexity Low_complexity 4 94 0 3 1700 1462 159 53 28 chr1 146240821 146241177 -50954255 - Lx9 LINE L1 -1 7643 7279 3 1700 696 235 18 133 chr1 146241206 146241598 -50953834 + L1_Rod LINE L1 2802 3148 -2699 3 1700 270 143 0 0 chr1 146241598 146241647 -50953785 + (GGA)n Simple_repeat Simple_repeat 1 49 0 3 1700 411 304 7 0 chr1 146241671 146241809 -50953623 + Lx9 LINE L1 6746 6884 -760 3 1700 2761 18 0 0 chr1 146241828 146242162 -50953270 - L1Md_F3 LINE L1 -468 6116 5783 3 1700 12508 49 4 0 chr1 146242203 146244484 -50950948 - L1Md_F2 LINE L1 -79 6503 4212 3 1700 1203 14 0 7 chr1 146244473 146244622 -50950810 - L1Md_F3 LINE L1 -777 5807 5660 3 1700 1587 62 35 17 chr1 146244622 146244852 -50950580 + L1Md_F3 LINE L1 6351 6584 0 3 1700 619 285 36 59 chr1 146244854 146244967 -50950465 + Lx9 LINE L1 6895 7010 -634 3 1700 1354 249 48 34 chr1 146244967 146245346 -50950086 - ORR1C2 LTR MaLR 0 384 1 3 1700 619 285 36 59 chr1 146245346 146245538 -50949894 + Lx9 LINE L1 7011 7193 -451 3 1700 203 274 0 0 chr1 146245630 146245681 -50949751 + CT-rich Low_complexity Low_complexity 1 51 0 3 1700 446 287 22 147 chr1 146246002 146246321 -50949111 - RMER20B LTR ERVK -114 513 235 3 1700 675 310 30 4 chr1 146246504 146246737 -50948695 - Lx6 LINE L1 -114 7346 7108 3 1700 316 274 117 10 chr1 146246810 146246913 -50948519 - Lx5 LINE L1 -301 6749 6636 3 1700 2364 139 11 16 chr1 146247256 146247630 -50947802 - Lx3B LINE L1 0 6973 6602 3 1700 240 326 189 30 chr1 146247694 146248090 -50947342 - L2 LINE L2 -1020 2399 1941 3 1700 227 231 110 119 chr1 146248464 146248582 -50946850 + MER103 DNA DNA 3 119 -47 3 1700 2293 182 64 50 chr1 146248654 146249173 -50946259 - RLTR12B LTR ERVK -2 526 1 3 1700 9598 21 0 0 chr1 146249256 146251096 -50944336 - L1Md_T LINE L1 0 6582 4743 3 1700 3187 134 90 7 chr1 146251676 146252231 -50943201 + MT2B LTR ERVL 1 601 0 3 1700 230 272 11 120 chr1 146253245 146253337 -50942095 - RLTR13C2 LTR ERVK -28 780 699 3 1700 369 0 0 0 chr1 146253337 146253378 -50942054 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1700 688 161 7 7 chr1 146253476 146253620 -50941812 + GA-rich Low_complexity Low_complexity 2 145 0 3 1700 280 298 85 0 chr1 146254203 146254297 -50941135 + LTR85b LTR Gypsy? 3 104 -680 3 1700 430 231 40 107 chr1 146254672 146254822 -50940610 + B1F SINE Alu 10 149 0 3 1700 344 266 0 12 chr1 146254835 146254915 -50940517 + ID4 SINE ID 2 80 -3 3 1700 306 0 0 0 chr1 146256085 146256119 -50939313 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1700 721 262 189 20 chr1 146256494 146256790 -50938642 - MTE2b LTR MaLR -4 375 30 3 1700 239 255 128 0 chr1 146256849 146256998 -50938434 - Charlie1a DNA MER1_type -84 1371 1204 3 1700 460 322 0 16 chr1 146257018 146257141 -50938291 + RSINE1 SINE B4 27 147 -18 3 1700 1335 279 90 42 chr1 146257283 146257759 -50937673 - Charlie1a DNA MER1_type -656 799 301 3 1700 369 355 106 5 chr1 146257793 146258011 -50937421 - Charlie1a DNA MER1_type -1214 241 2 3 1700 201 196 0 51 chr1 146258071 146258130 -50937302 + T-rich Low_complexity Low_complexity 4 59 0 3 1700 1981 49 0 8 chr1 146258143 146258392 -50937040 - L1Md_F2 LINE L1 -12 6570 6324 3 1700 4887 15 0 0 chr1 146259139 146259723 -50935709 - L1Md_A LINE L1 -253 5630 5047 3 1700 8022 33 0 1 chr1 146259723 146260673 -50934759 + L1Md_A LINE L1 5633 6581 -1 3 1700 183 80 0 0 chr1 146260683 146260708 -50934724 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1700 238 260 114 48 chr1 146260892 146260997 -50934435 + MLT1B LTR MaLR 1 112 -278 3 1700 919 85 12 52 chr1 146261338 146261511 -50933921 - L1_Mus3 LINE L1 0 6638 6473 3 1700 770 110 94 0 chr1 146261511 146261638 -50933794 + L1_Mus3 LINE L1 6333 6471 -165 3 1700 243 0 0 0 chr1 146261898 146261925 -50933507 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1700 499 366 48 45 chr1 146262390 146262682 -50932750 + L2c LINE L2 3085 3377 -10 3 1700 1987 256 53 13 chr1 146264272 146264945 -50930487 + L1_Mur3 LINE L1 520 1219 -6509 3 1700 46 45 0 0 chr1 146264950 146265017 -50930415 + AT_rich Low_complexity Low_complexity 1 67 0 3 1700 2715 193 44 77 chr1 146265017 146265886 -50929546 + L1_Mur3 LINE L1 1216 2055 -3825 3 1700 2017 165 61 27 chr1 146265902 146266413 -50929019 + L1_Mur3 LINE L1 2942 3469 -2411 3 1700 862 202 64 5 chr1 146266420 146266624 -50928808 + Lx7 LINE L1 7125 7340 -356 3 1700 35 41 0 0 chr1 146266643 146266692 -50928740 + AT_rich Low_complexity Low_complexity 1 49 0 3 1700 2994 194 56 8 chr1 146266746 146267464 -50927968 + L1_Mur3 LINE L1 4790 5541 -339 3 1700 625 277 22 0 chr1 146267655 146267792 -50927640 + B1_Mur2 SINE Alu 2 141 -8 3 1700 402 21 0 0 chr1 146267795 146267842 -50927590 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 3 1700 23 0 0 0 chr1 146269530 146269553 -50925879 + AT_rich Low_complexity Low_complexity 1 23 0 3 1700 189 0 0 0 chr1 146269736 146269757 -50925675 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1700 21 39 0 56 chr1 146270542 146270596 -50924836 + AT_rich Low_complexity Low_complexity 1 51 0 3 1700 489 147 0 0 chr1 146270737 146270832 -50924600 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 1700 932 276 122 21 chr1 146271020 146271397 -50924035 - Lx7 LINE L1 -398 7298 6884 3 1700 285 75 0 0 chr1 146271862 146271902 -50923530 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1700 24 67 0 0 chr1 146272028 146272073 -50923359 + AT_rich Low_complexity Low_complexity 1 45 0 4 1700 209 358 66 8 chr1 146272341 146272462 -50922970 + MIRb SINE MIR 95 222 -46 4 1700 554 153 297 7 chr1 146272985 146273123 -50922309 + MER5B DNA MER1_type 1 178 0 4 1700 213 232 18 0 chr1 146273258 146273314 -50922118 + GA-rich Low_complexity Low_complexity 1 57 0 4 1700 370 252 21 2 chr1 146273366 146273489 -50921943 + Lx7 LINE L1 7584 7693 -3 4 1700 233 360 27 12 chr1 146273499 146273656 -50921776 + MIRm SINE MIR 69 228 -40 4 1700 279 0 0 0 chr1 146274081 146274112 -50921320 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1700 264 343 84 24 chr1 146274265 146274561 -50920871 + L1MA5 LINE L1 3642 3955 -2188 4 1700 303 130 0 0 chr1 146274612 146274666 -50920766 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1700 420 328 172 0 chr1 146274671 146274805 -50920627 - RSINE1 SINE B4 0 165 9 4 1700 1037 286 82 27 chr1 146274811 146275102 -50920330 + L1MA5 LINE L1 4314 4617 -1526 4 1700 456 104 0 0 chr1 146275102 146275169 -50920263 + (TAG)n Simple_repeat Simple_repeat 3 69 0 4 1700 1037 286 82 27 chr1 146275169 146275498 -50919934 + L1MA5 LINE L1 4618 4967 -1176 4 1700 581 257 282 62 chr1 146275502 146276116 -50919316 - RMER1C Other Other -24 1318 570 4 212 1083 320 36 33 chr1 146276268 146277122 -50918310 + L1MA5 LINE L1 5040 5936 -364 4 1701 691 218 8 0 chr1 146278623 146278756 -50916676 - B1F2 SINE Alu 0 149 16 4 1701 231 327 9 98 chr1 146278661 146278773 -50916659 - MT2B LTR ERVL -338 263 162 4 1701 505 42 14 14 chr1 146279650 146279723 -50915709 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1701 370 79 16 16 chr1 146279860 146279924 -50915508 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1701 21 57 0 0 chr1 146280348 146280383 -50915049 + AT_rich Low_complexity Low_complexity 1 35 0 4 1701 979 216 148 195 chr1 146281404 146281963 -50913469 + MT2A LTR ERVL 1 533 0 4 1701 2861 73 30 30 chr1 146282423 146282830 -50912602 + MTB_Mm LTR MaLR 1 407 0 4 1701 3487 140 51 23 chr1 146282979 146283585 -50911847 - Lx2 LINE L1 -6 6991 6369 4 1701 1751 185 0 9 chr1 146283585 146283912 -50911520 + Lx2 LINE L1 6016 6339 -658 4 1701 351 296 68 0 chr1 146284279 146284411 -50911021 - B1F SINE Alu -8 141 1 4 1701 257 274 70 93 chr1 146285293 146285422 -50910010 + RMER21B LTR ERV1 57 182 -660 4 1701 268 158 37 62 chr1 146285452 146285533 -50909899 + RMER21B LTR ERV1 341 419 -423 4 1701 711 163 48 34 chr1 146285995 146286141 -50909291 - B1_Mur3 SINE Alu 0 149 2 4 1701 247 322 84 76 chr1 146286144 146286369 -50909063 + L2a LINE L2 3190 3416 -10 4 1701 315 0 0 0 chr1 146286564 146286599 -50908833 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1701 309 51 0 0 chr1 146286674 146286713 -50908719 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1701 457 219 18 18 chr1 146286750 146286864 -50908568 - ORR1B1 LTR MaLR -247 147 1 4 1701 8152 137 25 11 chr1 146286919 146288414 -50907018 + Lx3C LINE L1 5460 6974 -2 4 1701 611 349 42 42 chr1 146288683 146288943 -50906489 + RMER15 LTR ERVL 267 526 -49 4 1701 234 125 71 0 chr1 146289097 146289153 -50906279 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 4 1701 373 338 141 7 chr1 146289211 146289360 -50906072 - MLT2B3 LTR ERVL -146 408 240 4 1701 379 252 31 47 chr1 146289359 146289491 -50905941 + MLT2B1 LTR ERVL 414 567 0 4 1701 1244 262 49 49 chr1 146290080 146290449 -50904983 - MTEa LTR MaLR -1 378 10 4 1701 1309 96 0 43 chr1 146290671 146290878 -50904554 - L1Md_F2 LINE L1 0 6582 6385 4 1701 2410 70 31 2 chr1 146290879 146291232 -50904200 + L1_Mus2 LINE L1 5640 6000 -1696 4 1701 3853 228 121 22 chr1 146292394 146293470 -50901962 + Lx6 LINE L1 6053 7322 -138 4 1701 405 0 0 0 chr1 146293549 146293594 -50901838 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1701 489 211 54 8 chr1 146293597 146293726 -50901706 + Lx6 LINE L1 7326 7460 0 4 1701 294 368 0 0 chr1 146293805 146293881 -50901551 + ID_B1 SINE B4 86 161 -63 4 1701 224 394 38 19 chr1 146293881 146293911 -50901521 + PB1D10 SINE Alu 5 112 -5 4 1701 350 309 0 68 chr1 146293946 146294078 -50901354 + ID_B1 SINE B4 102 224 0 4 1701 287 274 31 10 chr1 146294153 146294249 -50901183 + PB1D10 SINE Alu 3 100 -17 4 1701 678 237 0 22 chr1 146294302 146294436 -50900996 + B1_Mur1 SINE Alu 3 133 -16 4 1701 244 265 0 0 chr1 146294437 146294486 -50900946 + polypurine Low_complexity Low_complexity 1 49 0 4 1701 332 252 0 0 chr1 146294516 146294631 -50900801 + (TCTG)n Simple_repeat Simple_repeat 4 118 0 4 1701 311 238 10 10 chr1 146294622 146294724 -50900708 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1701 29 0 0 0 chr1 146294754 146294783 -50900649 + AT_rich Low_complexity Low_complexity 1 29 0 4 1701 521 364 72 31 chr1 146295022 146295314 -50900118 - LTR16A LTR ERVL -1 450 147 4 1701 290 115 0 16 chr1 146295451 146295513 -50899919 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1701 405 0 0 0 chr1 146295513 146295558 -50899874 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1701 375 226 0 0 chr1 146296070 146296172 -50899260 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1701 444 324 95 59 chr1 146296183 146296293 -50899139 + ORR1D2 LTR MaLR 1 129 -241 4 1701 843 39 0 0 chr1 146296293 146296396 -50899036 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 4 1701 444 324 95 59 chr1 146296396 146296642 -50898790 + ORR1D2 LTR MaLR 130 369 -1 4 1701 482 212 163 14 chr1 146297595 146297768 -50897664 - B3 SINE B2 -5 190 6 4 1701 450 0 0 0 chr1 146297946 146297996 -50897436 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1701 23 33 0 0 chr1 146298875 146298905 -50896527 + AT_rich Low_complexity Low_complexity 1 30 0 4 1701 343 315 102 0 chr1 146298930 146299057 -50896375 - RSINE1 SINE B4 -22 143 4 4 1701 373 291 84 95 chr1 146299370 146299632 -50895800 - ORR1E LTR MaLR -11 348 90 4 1701 325 285 106 15 chr1 146299975 146300079 -50895353 - MER58A DNA MER1_type -15 209 106 4 1701 258 32 0 0 chr1 146300079 146300110 -50895322 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1701 325 285 106 15 chr1 146300110 146300137 -50895295 - MER58A DNA MER1_type -119 105 66 4 1701 22 0 0 0 chr1 146300965 146300987 -50894445 + AT_rich Low_complexity Low_complexity 1 22 0 4 1701 428 292 8 23 chr1 146301073 146301206 -50894226 + MTE2b LTR MaLR 1 131 -248 4 1701 431 254 64 0 chr1 146301212 146301322 -50894110 - MTD LTR MaLR -5 414 298 4 1701 315 65 0 0 chr1 146301358 146301404 -50894028 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1701 296 250 0 26 chr1 146301404 146301482 -50893950 + MTE2b LTR MaLR 282 357 -2 4 1701 258 167 0 0 chr1 146301502 146301562 -50893870 + A-rich Low_complexity Low_complexity 1 60 0 4 1701 230 312 145 50 chr1 146302981 146303160 -50892272 + MIR SINE MIR 37 232 -30 4 1701 243 345 0 11 chr1 146303549 146303640 -50891792 + CT-rich Low_complexity Low_complexity 1 90 0 4 1701 385 344 84 11 chr1 146304017 146304208 -50891224 - B4 SINE B4 -85 207 3 4 1701 21 0 0 0 chr1 146304215 146304236 -50891196 + AT_rich Low_complexity Low_complexity 1 21 0 4 1701 571 226 5 180 chr1 146304316 146304426 -50891006 + ORR1D1 LTR MaLR 6 95 -279 4 1701 588 152 0 0 chr1 146304426 146304518 -50890914 + 4.5SRNA scRNA scRNA 2 93 -1 4 1701 1077 52 7 0 chr1 146304518 146304654 -50890778 + B1_Mus1 SINE Alu 1 137 -11 4 1701 328 20 20 20 chr1 146304654 146304704 -50890728 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 4 1701 571 226 5 180 chr1 146304704 146304780 -50890652 + ORR1D1 LTR MaLR 96 159 -215 4 1701 41287 3 0 0 chr1 146305367 146311509 -50883923 - L1Md_A LINE L1 0 6582 440 4 1701 198 0 0 0 chr1 146311853 146311875 -50883557 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1701 516 235 0 10 chr1 146311876 146311979 -50883453 + Lx7 LINE L1 6656 6757 -939 4 1701 624 229 174 69 chr1 146312007 146312340 -50883092 + RLTR9A LTR ERVK 1 368 0 4 1701 5090 154 120 41 chr1 146312801 146314016 -50881416 + RMER16-int LTR ERVK 255 1566 -3840 4 1701 318 270 50 0 chr1 146314127 146314227 -50881205 + ETnERV2-int LTR ERVK 1415 1519 -1795 4 1701 295 154 0 37 chr1 146314230 146314284 -50881148 + ETnERV2-int LTR ERVK 2382 2433 -3375 4 1701 439 253 15 27 chr1 146314294 146314444 -50880988 + ETnERV2-int LTR ERVK 2474 2725 -3083 4 1701 2111 154 13 26 chr1 146314624 146315003 -50880429 + RMER16-int LTR ERVK 1566 1939 -3467 4 1701 229 227 31 83 chr1 146315003 146315099 -50880333 + RLTR9A LTR ERVK 278 368 0 4 1701 1175 177 5 0 chr1 146315103 146315301 -50880131 + URR1A DNA MER1_type 27 225 -1 4 1701 2173 252 77 13 chr1 146315306 146315928 -50879504 + Lx7 LINE L1 6755 7416 -280 4 1701 343 229 79 39 chr1 146315961 146316088 -50879344 + Lx7 LINE L1 7565 7696 0 4 1701 1599 182 88 67 chr1 146316154 146316360 -50879072 - ORR1C2 LTR MaLR 0 384 185 4 1701 491 0 17 0 chr1 146316360 146316419 -50879013 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1701 1599 182 88 67 chr1 146316419 146316588 -50878844 - ORR1C2 LTR MaLR -200 184 1 4 1701 204 208 0 36 chr1 146316727 146316782 -50878650 + T-rich Low_complexity Low_complexity 3 55 0 4 1701 576 243 0 65 chr1 146317371 146317525 -50877907 + B1_Mur3 SINE Alu 5 148 -1 4 1701 393 331 22 0 chr1 146317655 146317794 -50877638 + B1_Mur2 SINE Alu 3 144 -5 4 1701 783 253 162 31 chr1 146318133 146318423 -50877009 + RCHARR1 DNA MER1_type 124 451 -523 4 1701 3947 133 91 4 chr1 146318437 146319116 -50876316 - Lx2 LINE L1 -2 6995 6258 4 1701 1296 249 51 58 chr1 146319117 146319553 -50875879 - RLTR1B LTR ERV1 -2 510 59 4 1701 1740 125 13 3 chr1 146319577 146319875 -50875557 - Lx2 LINE L1 -726 6271 5971 4 1701 757 231 35 23 chr1 146319905 146320078 -50875354 + RCHARR1 DNA MER1_type 525 699 -275 4 1701 626 284 187 31 chr1 146320085 146320237 -50875195 - MTD LTR MaLR -2 417 221 4 1701 222 37 0 0 chr1 146320237 146320264 -50875168 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 1701 626 284 187 31 chr1 146320264 146320464 -50874968 - MTD LTR MaLR -199 220 11 4 1701 29 94 0 0 chr1 146320500 146320585 -50874847 + AT_rich Low_complexity Low_complexity 1 85 0 4 1701 29 0 0 0 chr1 146320963 146320992 -50874440 + AT_rich Low_complexity Low_complexity 1 29 0 4 1701 29504 98 8 13 chr1 146321048 146326289 -50869143 + L1Md_F LINE L1 164 5376 -507 4 1701 4293 28 0 0 chr1 146326663 146327165 -50868267 - L1Md_A LINE L1 0 6582 6081 4 1701 236 281 87 10 chr1 146327198 146327302 -50868130 - Lx9 LINE L1 -638 7006 6895 4 1701 1705 55 0 33 chr1 146327304 146327546 -50867886 - L1Md_F3 LINE L1 0 6584 6351 4 1701 6734 80 5 19 chr1 146327537 146328482 -50866950 + L1Md_F2 LINE L1 5651 6582 0 4 1701 446 319 119 77 chr1 146330990 146331270 -50864162 - LTR52 LTR ERVL -22 399 100 5 1701 429 20 0 0 chr1 146331270 146331320 -50864112 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1701 446 319 119 77 chr1 146331320 146331416 -50864016 - LTR52 LTR ERVL -322 99 7 5 1701 188 330 32 42 chr1 146331558 146331653 -50863779 + L2a LINE L2 3280 3373 -53 5 1701 386 175 12 0 chr1 146331931 146332011 -50863421 + CT-rich Low_complexity Low_complexity 3 83 0 5 1701 1032 116 7 0 chr1 146332011 146332157 -50863275 - B1_Mm SINE Alu 0 147 1 5 1701 1664 236 52 30 chr1 146332158 146332560 -50862872 - MTD LTR MaLR -8 411 1 5 1701 415 348 58 16 chr1 146333699 146333889 -50861543 - B3A SINE B2 0 198 1 5 1701 264 30 0 0 chr1 146334129 146334162 -50861270 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1701 1635 181 88 26 chr1 146334363 146334715 -50860717 + ORR1D1 LTR MaLR 1 374 0 5 1701 180 0 0 0 chr1 146336416 146336436 -50858996 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1701 1126 58 0 0 chr1 146336557 146336696 -50858736 + B1_Mus1 SINE Alu 1 139 -9 5 1701 228 67 0 0 chr1 146336697 146336727 -50858705 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 1701 820 313 77 23 chr1 146336931 146337272 -50858160 - MER67C LTR ERV1 -338 373 1 5 1701 341 272 0 12 chr1 146338026 146338108 -50857324 - ID4 SINE ID -1 82 2 5 1701 565 197 45 24 chr1 146338818 146338948 -50856484 - ORR1A3 LTR MaLR -243 151 3 5 1701 529 278 79 31 chr1 146339134 146339424 -50856008 - L1M3 LINE L1 -2081 4059 3756 5 1701 2621 211 57 162 chr1 146339442 146340442 -50854990 + RMER1A Other Other 3 785 -245 5 1701 1368 206 93 25 chr1 146340756 146341458 -50853974 + L1_Mur3 LINE L1 901 1644 -4233 5 1701 992 138 18 12 chr1 146341454 146341622 -50853810 - L1_Mur2 LINE L1 -1647 4230 4062 5 1701 4717 216 33 2 chr1 146341614 146342556 -50852876 + Lx5 LINE L1 6076 7046 -4 5 1701 730 324 76 32 chr1 146343054 146343398 -50852034 + MLT1B LTR MaLR 16 374 -16 5 1701 22 0 0 0 chr1 146343492 146343514 -50851918 + AT_rich Low_complexity Low_complexity 1 22 0 5 1701 349 258 29 31 chr1 146343535 146343694 -50851738 - B3 SINE B2 0 216 6 5 1701 836 46 0 9 chr1 146344861 146344971 -50850461 + (TTC)n Simple_repeat Simple_repeat 3 111 0 5 1701 518 103 0 11 chr1 146344971 146345059 -50850373 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 1701 489 115 0 0 chr1 146346711 146346789 -50848643 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1701 297 51 0 0 chr1 146347928 146347967 -50847465 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1701 313 341 126 70 chr1 146349270 146349469 -50845963 + LTR40b LTR ERVL 245 454 -8 5 1701 29 98 0 0 chr1 146350009 146350101 -50845331 + AT_rich Low_complexity Low_complexity 1 92 0 5 1701 29 47 0 0 chr1 146350265 146350308 -50845124 + AT_rich Low_complexity Low_complexity 1 43 0 5 1701 21 36 0 0 chr1 146350338 146350366 -50845066 + AT_rich Low_complexity Low_complexity 1 28 0 5 1701 279 271 100 17 chr1 146351044 146351164 -50844268 + MER58C DNA MER1_type 67 196 -19 5 1701 17361 96 5 4 chr1 146351642 146354182 -50841250 + Lx3A LINE L1 3356 5921 -1060 5 1701 241 26 26 26 chr1 146354182 146354221 -50841211 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1701 7266 104 46 23 chr1 146354221 146355057 -50840375 + Lx3A LINE L1 5922 6760 -221 5 1701 343 317 57 38 chr1 146355097 146355307 -50840125 - L1MC1 LINE L1 -9 6324 6111 5 1701 531 276 103 16 chr1 146355368 146355611 -50839821 + Tigger13a DNA MER2_type 150 413 -358 5 1701 29 28 0 0 chr1 146355686 146355722 -50839710 + AT_rich Low_complexity Low_complexity 1 36 0 5 1701 544 286 88 76 chr1 146357540 146357658 -50837774 + Arthur1B DNA Tip100 351 462 -763 5 1701 2337 113 8 14 chr1 146357658 146358009 -50837423 + Lx3A LINE L1 6620 6968 -13 5 1701 273 57 0 0 chr1 146358009 146358044 -50837388 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1701 544 286 88 76 chr1 146358044 146358162 -50837270 + Arthur1B DNA Tip100 463 590 -635 5 1701 5546 44 4 4 chr1 146359166 146359883 -50835549 - L1Md_F3 LINE L1 0 6584 5874 5 1701 3124 62 0 0 chr1 146359881 146360270 -50835162 + L1Md_F3 LINE L1 5495 5883 0 5 1701 267 104 0 0 chr1 146360469 146360517 -50834915 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1701 644 67 0 11 chr1 146361883 146361974 -50833458 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 5 1701 623 225 29 14 chr1 146361977 146362117 -50833315 - B1_Mur4 SINE Alu -6 144 3 5 1701 30 69 0 0 chr1 146362202 146362260 -50833172 + AT_rich Low_complexity Low_complexity 1 58 0 5 1701 293 289 0 13 chr1 146362277 146362354 -50833078 + B4A SINE B4 2 77 -215 5 1701 284 352 78 31 chr1 146362382 146362511 -50832921 + B4A SINE B4 156 290 -2 5 1701 279 0 0 0 chr1 146362681 146362712 -50832720 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1701 440 35 17 0 chr1 146363867 146363925 -50831507 + (CAA)n Simple_repeat Simple_repeat 2 60 0 5 1701 356 265 29 10 chr1 146364498 146364601 -50830831 + PB1D10 SINE Alu 5 109 -8 5 1701 23 0 0 0 chr1 146366558 146366581 -50828851 + AT_rich Low_complexity Low_complexity 1 23 0 5 1701 458 70 0 14 chr1 146367264 146367336 -50828096 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 5 1701 366 146 48 68 chr1 146367339 146367442 -50827990 - Lx3C LINE L1 -15 6961 6861 5 1701 31 68 0 0 chr1 146368359 146368418 -50827014 + AT_rich Low_complexity Low_complexity 1 59 0 5 1701 2590 220 36 80 chr1 146368749 146369607 -50825825 + RMER6C LTR ERVK 1 718 -38 5 1701 209 226 19 0 chr1 146370188 146370241 -50825191 + (CAT)n Simple_repeat Simple_repeat 3 56 0 5 1701 420 20 0 0 chr1 146371004 146371053 -50824379 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1701 1011 102 0 0 chr1 146371053 146371229 -50824203 + (GA)n Simple_repeat Simple_repeat 1 177 0 5 1701 3489 151 108 10 chr1 146371523 146371622 -50823810 - RMER6A LTR ERVK 0 756 660 5 1701 1978 42 0 0 chr1 146371622 146371861 -50823571 - L1Md_A LINE L1 0 6582 6344 5 1701 3489 151 108 10 chr1 146371861 146372394 -50823038 - RMER6A LTR ERVK -97 659 59 5 1701 228 35 0 0 chr1 146372394 146372423 -50823009 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1701 3489 151 108 10 chr1 146372423 146372476 -50822956 - RMER6A LTR ERVK -698 58 6 5 1701 369 0 0 0 chr1 146374006 146374047 -50821385 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1701 23 0 0 0 chr1 146374587 146374610 -50820822 + AT_rich Low_complexity Low_complexity 1 23 0 5 1701 21 0 0 0 chr1 146375708 146375729 -50819703 + AT_rich Low_complexity Low_complexity 1 21 0 5 1701 204 163 0 23 chr1 146376217 146376261 -50819171 + T-rich Low_complexity Low_complexity 1 43 0 5 1701 397 338 114 0 chr1 146376852 146377062 -50818370 + Lx8 LINE L1 6796 7029 -444 5 1701 250 341 107 52 chr1 146377106 146377415 -50818017 + Lx8 LINE L1 7133 7458 -15 5 1701 24 0 0 0 chr1 146377583 146377607 -50817825 + AT_rich Low_complexity Low_complexity 1 24 0 5 1701 784 263 52 28 chr1 146377715 146377926 -50817506 - B3 SINE B2 0 216 1 5 1701 2045 137 0 109 chr1 146378129 146378523 -50816909 - Lx2A LINE L1 -1 7007 6657 5 1701 197 128 77 0 chr1 146378953 146378992 -50816440 - MIRc SINE MIR -112 156 115 5 1701 192 206 254 0 chr1 146378958 146379021 -50816411 - MIRm SINE MIR -123 153 75 5 1701 2826 116 90 16 chr1 146379620 146380118 -50815314 + RLTR31B_Mm LTR ERVK 1 535 -22 5 1701 378 0 0 0 chr1 146380601 146380643 -50814789 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1701 570 269 142 21 chr1 146380936 146381126 -50814306 - B3 SINE B2 -3 213 1 5 1701 630 322 73 0 chr1 146381935 146382140 -50813292 + B4A SINE B4 11 230 -62 5 1701 474 143 26 35 chr1 146382248 146382364 -50813068 + Lx9 LINE L1 7528 7642 -2 5 1701 2330 173 156 97 chr1 146382552 146383204 -50812228 + RMER6C LTR ERVK 1 690 0 5 1701 2998 41 0 5 chr1 146383507 146383878 -50811554 - L1Md_F2 LINE L1 -12 6570 6202 5 1701 23 78 0 0 chr1 146384315 146384366 -50811066 + AT_rich Low_complexity Low_complexity 1 51 0 5 1701 2592 74 3 8 chr1 146384842 146385212 -50810220 + L1_Mus4 LINE L1 6269 6636 0 5 1701 1757 71 20 16 chr1 146385626 146385870 -50809562 - L1_Mus3 LINE L1 -165 6473 6229 5 1701 1024 73 12 41 chr1 146385870 146386042 -50809390 + L1_Mus3 LINE L1 6466 6632 -6 5 1701 22 0 0 0 chr1 146386407 146386429 -50809003 + AT_rich Low_complexity Low_complexity 1 22 0 5 1701 24 53 0 0 chr1 146386476 146386514 -50808918 + AT_rich Low_complexity Low_complexity 1 38 0 5 1701 22 109 0 0 chr1 146387908 146388000 -50807432 + AT_rich Low_complexity Low_complexity 1 92 0 5 1701 258 385 107 5 chr1 146390931 146391137 -50804295 - MIRb SINE MIR -20 248 22 5 1701 378 0 0 0 chr1 146391614 146391656 -50803776 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1701 279 0 0 0 chr1 146392180 146392211 -50803221 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1701 4039 97 5 30 chr1 146394080 146394705 -50800727 - L1_Mus3 LINE L1 -6 6632 6024 5 1701 1042 107 0 0 chr1 146394705 146394854 -50800578 + L1_Mus3 LINE L1 5876 6024 -614 5 1701 758 139 52 19 chr1 146394854 146395008 -50800424 - Lx LINE L1 -15 6639 6481 5 1701 213 255 141 31 chr1 146395794 146395900 -50799532 + MIRb SINE MIR 91 206 -56 5 1701 366 262 19 0 chr1 146396256 146396359 -50799073 - Lx4B LINE L1 -1 7057 6953 5 1701 360 0 0 0 chr1 146396375 146396415 -50799017 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1701 874 201 22 5 chr1 146396431 146396621 -50798811 + Lx4B LINE L1 6487 6676 -324 5 1701 229 292 151 48 chr1 146397243 146397369 -50798063 + MARNA DNA Mariner 437 575 -11 5 1701 378 143 0 0 chr1 146397732 146397795 -50797637 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1701 21 57 0 0 chr1 146398540 146398575 -50796857 + AT_rich Low_complexity Low_complexity 1 35 0 5 1701 277 312 99 24 chr1 146399590 146399843 -50795589 - L1MD1 LINE L1 -288 5954 5683 5 1701 21 57 0 0 chr1 146400822 146400857 -50794575 + AT_rich Low_complexity Low_complexity 1 35 0 5 1701 813 115 0 7 chr1 146401123 146401263 -50794169 + Lx2A1 LINE L1 6870 7008 0 5 1701 1123 68 0 0 chr1 146402021 146402167 -50793265 + B1_Mus1 SINE Alu 1 146 -2 5 1701 419 233 11 11 chr1 146402259 146402346 -50793086 - B3A SINE B2 -108 90 4 5 1701 25 51 0 0 chr1 146402943 146402982 -50792450 + AT_rich Low_complexity Low_complexity 1 39 0 6 1701 279 154 0 0 chr1 146405011 146405063 -50790369 - Lx9 LINE L1 -4 7640 7589 6 1701 929 246 24 0 chr1 146405134 146405341 -50790091 + Lx9 LINE L1 7139 7350 -294 6 1701 306 309 34 68 chr1 146405514 146405632 -50789800 + PB1D10 SINE Alu 1 114 -3 6 1701 22 0 0 0 chr1 146406333 146406355 -50789077 + AT_rich Low_complexity Low_complexity 1 22 0 6 1701 244 133 85 43 chr1 146406392 146406439 -50788993 + MT2B LTR ERVL 190 238 -363 6 1701 458 233 39 0 chr1 146406399 146406502 -50788930 + B1_Mur1 SINE Alu 43 149 0 6 1701 503 31 15 0 chr1 146407287 146407352 -50788080 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 212 467 314 102 11 chr1 146407422 146407599 -50787833 - B4A SINE B4 -99 193 1 6 1702 1903 116 48 45 chr1 146407724 146408076 -50787356 + Lx LINE L1 6302 6654 0 6 1702 254 200 25 12 chr1 146408101 146408182 -50787250 - Lx9 LINE L1 -31 7613 7532 6 1702 253 289 69 69 chr1 146409167 146409226 -50786206 - L1MD3 LINE L1 -46 7949 7893 6 1702 1424 69 5 16 chr1 146409226 146409417 -50786015 - B2_Mm1t SINE B2 -3 190 2 6 1702 253 289 69 69 chr1 146409417 146409561 -50785871 - L1MD3 LINE L1 -103 7892 7746 6 1702 23 54 0 0 chr1 146411014 146411051 -50784381 + AT_rich Low_complexity Low_complexity 1 37 0 6 1702 231 180 33 0 chr1 146412082 146412207 -50783225 + (TATAA)n Simple_repeat Simple_repeat 1 129 0 6 1702 364 269 132 19 chr1 146415347 146415453 -50779979 + RSINE1 SINE B4 3 120 -45 6 1702 786 311 32 36 chr1 146415609 146415862 -50779570 + B4A SINE B4 26 277 -15 6 1702 414 0 0 0 chr1 146415936 146415982 -50779450 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1702 351 0 0 0 chr1 146417226 146417265 -50778167 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1702 707 107 9 0 chr1 146417505 146417617 -50777815 - L1_Mus2 LINE L1 -398 6168 6056 6 1702 2972 85 8 2 chr1 146417617 146418017 -50777415 + L1_Mus2 LINE L1 6165 6566 0 6 1702 210 244 0 0 chr1 146418973 146419014 -50776418 + polypurine Low_complexity Low_complexity 2 42 0 6 1702 438 295 35 9 chr1 146420622 146420735 -50774697 - ID_B1 SINE B4 -7 217 102 6 1702 405 282 145 0 chr1 146421216 146421340 -50774092 - B1F1 SINE Alu -2 147 6 6 1702 201 74 0 0 chr1 146422687 146422714 -50772718 + (TTTTTG)n Simple_repeat Simple_repeat 1 27 0 6 1702 181 263 145 0 chr1 146424133 146424209 -50771223 - L4 LINE RTE -209 1820 1734 6 1702 716 298 98 18 chr1 146424605 146424882 -50770550 + RLTR42-int LTR ERVK 1101 1399 -4123 6 1702 26 30 0 0 chr1 146425461 146425494 -50769938 + AT_rich Low_complexity Low_complexity 1 33 0 6 1702 725 141 15 0 chr1 146427060 146427195 -50768237 + CT-rich Low_complexity Low_complexity 3 139 0 6 1702 33206 88 21 7 chr1 146427244 146433345 -50762087 - L1Md_F2 LINE L1 0 6582 387 6 1702 1227 103 0 0 chr1 146433346 146433589 -50761843 + (TTTC)n Simple_repeat Simple_repeat 1 243 0 6 1702 2679 243 142 12 chr1 146433709 146434518 -50760914 + ORR1D1-int LTR MaLR 456 1369 -1 6 1702 926 296 99 10 chr1 146434519 146434812 -50760620 + ORR1D1 LTR MaLR 1 319 -55 6 1702 25 31 0 0 chr1 146434812 146434844 -50760588 + AT_rich Low_complexity Low_complexity 1 32 0 6 1702 227 68 68 0 chr1 146434875 146434919 -50760513 - L1Md_F3 LINE L1 -3 6581 6535 6 1702 1643 194 16 3 chr1 146434935 146435240 -50760192 - RLTR27 LTR ERVK 0 309 1 6 1702 1329 156 26 9 chr1 146435240 146435473 -50759959 - MMERVK10C-int LTR ERVK 0 7581 7345 6 1702 3987 31 14 6 chr1 146435495 146435981 -50759451 - L1Md_F3 LINE L1 -1 6583 6094 6 1702 390 314 34 17 chr1 146436130 146436305 -50759127 - MMERVK10C-int LTR ERVK -506 7075 6898 6 1702 1070 321 46 38 chr1 146436385 146437285 -50758147 - IAPLTR3-int LTR ERVK -4875 1946 704 6 1702 307 197 0 0 chr1 146437444 146437505 -50757927 - IAPLTR3-int LTR ERVK -6765 915 855 6 1702 682 238 45 45 chr1 146437634 146437832 -50757600 - IAPLTR3-int LTR ERVK -1135 852 655 6 1702 359 80 38 0 chr1 146437863 146437916 -50757516 - IAPLTR3-int LTR ERVK -7314 267 163 6 1702 225 125 0 0 chr1 146437940 146437972 -50757460 - RLTR10A LTR ERVK 0 411 380 6 1702 1627 171 28 0 chr1 146438019 146438306 -50757126 - RLTR27 LTR ERVK -11 298 4 6 1702 1047 258 40 54 chr1 146438306 146438624 -50756808 - MT2B LTR ERVL -43 558 87 6 1702 205 172 15 15 chr1 146438714 146438779 -50756653 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1702 327 298 98 8 chr1 146439183 146439305 -50756127 + MIRc SINE MIR 28 160 -108 6 1702 1107 287 114 0 chr1 146440608 146440932 -50754500 - ORR1D2 LTR MaLR -1 369 9 6 1702 231 114 0 0 chr1 146440932 146440967 -50754465 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1702 243 114 0 0 chr1 146441000 146441044 -50754388 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 6 1702 206 186 0 48 chr1 146441045 146441107 -50754325 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 6 1702 495 307 18 22 chr1 146441398 146441590 -50753842 - Lx9 LINE L1 -363 7281 6953 6 1702 860 312 37 59 chr1 146441615 146441938 -50753494 - MT2A LTR ERVL -138 395 80 6 1702 320 291 23 0 chr1 146441966 146442052 -50753380 - MT2A LTR ERVL -445 88 1 6 1702 21 36 0 0 chr1 146442984 146443012 -50752420 + AT_rich Low_complexity Low_complexity 1 28 0 6 1702 449 332 57 2 chr1 146444196 146444362 -50751070 - MTE2b LTR MaLR -214 205 1 6 1702 2532 112 0 139 chr1 146444767 146444981 -50750451 + RLTR19B LTR ERVK 1 207 -508 6 1702 1058 61 0 70 chr1 146444981 146445139 -50750293 + B1_Mus1 SINE Alu 2 148 0 6 1702 2532 112 0 139 chr1 146445139 146445421 -50750011 + RLTR19B LTR ERVK 208 428 -287 6 1702 1002 210 210 13 chr1 146445394 146445485 -50749947 - RMER6D LTR ERVK -238 482 373 6 1702 378 0 0 0 chr1 146445485 146445527 -50749905 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1702 1002 195 191 11 chr1 146445527 146445766 -50749666 - RMER6D LTR ERVK -348 372 9 6 1702 22 0 0 0 chr1 146445833 146445855 -50749577 + AT_rich Low_complexity Low_complexity 1 22 0 6 1702 7990 43 1 1 chr1 146446103 146447299 -50748133 - L1Md_F2 LINE L1 -2 6580 5385 6 1702 398 262 146 52 chr1 146447757 146447970 -50747462 + MER96B DNA hAT 4 236 -181 6 1702 1167 94 21 5 chr1 146448153 146448345 -50747087 + Lx LINE L1 6454 6648 -6 6 1702 237 65 0 0 chr1 146448749 146448780 -50746652 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1702 1133 56 0 30 chr1 146449301 146449467 -50745965 - L1Md_F2 LINE L1 -1 6581 6421 6 1702 1193 76 5 0 chr1 146449467 146449649 -50745783 + L1Md_F2 LINE L1 5666 5854 -784 6 1702 2500 153 141 52 chr1 146450668 146451220 -50744212 - MT2B LTR ERVL 0 601 1 6 1702 201 365 24 0 chr1 146451434 146451519 -50743913 - MER5A DNA MER1_type -55 134 48 6 1702 325 361 75 25 chr1 146451849 146452048 -50743384 - RMER15 LTR ERVL -68 507 299 6 1702 730 279 63 145 chr1 146452273 146452440 -50742992 + ORR1B1 LTR MaLR 3 166 -228 6 1702 3113 88 32 5 chr1 146452440 146452874 -50742558 - L1_Mus3 LINE L1 -7 6631 6186 6 1702 730 279 63 145 chr1 146452874 146453133 -50742299 + ORR1B1 LTR MaLR 167 394 0 6 1702 180 0 0 0 chr1 146453953 146453973 -50741459 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 6 1702 628 141 8 8 chr1 146454177 146454299 -50741133 + CT-rich Low_complexity Low_complexity 2 123 0 6 1702 244 300 223 0 chr1 146455646 146455776 -50739656 + L2 LINE L2 2325 2483 -936 6 1702 236 325 50 73 chr1 146455980 146456159 -50739273 - L1MB8 LINE L1 -88 6090 5916 6 1702 471 66 0 0 chr1 146456179 146456240 -50739192 - U4 snRNA snRNA -84 61 1 6 1702 2441 202 48 41 chr1 146456342 146456904 -50738528 + Lx3C LINE L1 6409 6974 -2 6 1702 324 352 57 35 chr1 146456917 146457144 -50738288 - L1M4 LINE L1 -385 5779 5548 6 1702 405 0 0 0 chr1 146457223 146457268 -50738164 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1702 25 0 0 0 chr1 146457364 146457389 -50738043 + AT_rich Low_complexity Low_complexity 1 25 0 6 1702 555 218 0 0 chr1 146457541 146457683 -50737749 + (TA)n Simple_repeat Simple_repeat 1 142 0 6 1702 896 214 30 0 chr1 146457724 146457925 -50737507 - RLTR11A2 LTR ERVK -7 520 314 6 1702 258 272 65 96 chr1 146457959 146458105 -50737327 - L1M4 LINE L1 -1260 4886 4747 6 1702 3845 131 27 3 chr1 146458105 146458697 -50736735 - Lx3A LINE L1 0 6981 6376 6 1702 258 272 65 96 chr1 146458697 146458749 -50736683 - L1M4 LINE L1 -1400 4746 4694 6 1702 8919 103 43 12 chr1 146458745 146459588 -50735844 - Lx3_Mus LINE L1 0 7009 6151 6 1702 531 0 0 0 chr1 146459588 146459647 -50735785 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 6 1702 8919 103 43 12 chr1 146459647 146459861 -50735571 - Lx3_Mus LINE L1 -859 6150 5924 6 1702 1014 157 0 0 chr1 146459861 146460039 -50735393 + T-rich Low_complexity Low_complexity 3 180 0 6 1702 8919 89 26 11 chr1 146460039 146460510 -50734922 - Lx3_Mus LINE L1 -1086 5923 5443 6 1702 290 332 56 24 chr1 146460615 146460790 -50734642 - L1M4 LINE L1 -1549 4597 4426 6 1702 342 0 0 0 chr1 146460790 146460828 -50734604 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1702 290 332 56 24 chr1 146460828 146460902 -50734530 - L1M4 LINE L1 -1721 4425 4341 6 1702 3623 114 60 14 chr1 146461384 146461970 -50733462 - Lx LINE L1 0 6654 6042 6 1702 5037 38 2 0 chr1 146462307 146462907 -50732525 + L1Md_T LINE L1 5982 6582 0 6 1702 22 35 0 0 chr1 146463879 146463908 -50731524 + AT_rich Low_complexity Low_complexity 1 29 0 6 1702 25 51 0 0 chr1 146463982 146464021 -50731411 + AT_rich Low_complexity Low_complexity 1 39 0 6 1702 483 270 111 11 chr1 146464045 146464315 -50731117 + Lx9 LINE L1 7340 7636 -8 6 1702 226 234 0 0 chr1 146464436 146464483 -50730949 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 1702 21 0 0 0 chr1 146464649 146464670 -50730762 + AT_rich Low_complexity Low_complexity 1 21 0 6 1702 372 234 10 21 chr1 146465113 146465209 -50730223 - L3 LINE CR1 -4383 106 12 6 1702 348 83 0 0 chr1 146465783 146465831 -50729601 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1702 742 330 0 0 chr1 146465831 146466016 -50729416 - B3 SINE B2 -27 189 5 6 1702 435 130 0 0 chr1 146466103 146466180 -50729252 + (T)n Simple_repeat Simple_repeat 1 77 0 6 1702 367 97 50 8 chr1 146466199 146466277 -50729155 - B1_Mus2 SINE Alu -2 145 34 6 1702 1279 96 0 31 chr1 146467085 146467279 -50728153 - B2_Mm2 SINE B2 -5 190 3 6 1702 243 0 0 0 chr1 146468795 146468822 -50726610 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1702 214 352 27 48 chr1 146469499 146469645 -50725787 + MIRb SINE MIR 87 229 -39 6 1702 609 368 102 8 chr1 146469919 146470185 -50725247 - B4 SINE B4 0 292 2 6 1702 1786 161 110 75 chr1 146470572 146471028 -50724404 + ORR1A4-int LTR MaLR 1038 1509 0 6 1702 1309 183 33 73 chr1 146471028 146471328 -50724104 + ORR1A4 LTR MaLR 1 288 -41 6 1702 22 0 0 0 chr1 146472204 146472226 -50723206 + AT_rich Low_complexity Low_complexity 1 22 0 6 1702 1299 209 48 10 chr1 146472275 146472565 -50722867 - RMER1C Other Other 0 1342 1042 6 1702 642 209 0 0 chr1 146472565 146472704 -50722728 + CT-rich Low_complexity Low_complexity 3 141 0 6 1702 264 236 0 0 chr1 146473127 146473182 -50722250 - B4A SINE B4 -237 55 1 7 1702 5370 171 25 38 chr1 146475258 146475723 -50719709 + Lx4A LINE L1 6033 6488 -570 7 1702 1780 141 75 7 chr1 146475723 146476030 -50719402 + Lx2 LINE L1 6670 6997 0 7 1702 5370 171 25 38 chr1 146476030 146476603 -50718829 + Lx4A LINE L1 6489 7058 0 7 1702 299 294 96 25 chr1 146477107 146477264 -50718168 + MIR SINE MIR 63 230 -32 7 1702 969 269 58 139 chr1 146477803 146478428 -50717004 + RLTR40 LTR ERVK 1 574 -243 7 1702 778 71 30 30 chr1 146478463 146478594 -50716838 + L1Md_F2 LINE L1 6450 6580 -2 7 1702 405 287 4 57 chr1 146478776 146478918 -50716514 - PB1D10 SINE Alu -12 137 1 7 1702 628 301 129 29 chr1 146479426 146479877 -50715555 + MER67A LTR ERV1 48 543 0 7 1702 1155 55 7 0 chr1 146480502 146480648 -50714784 - B1_Mm SINE Alu 0 147 1 7 1702 1603 48 14 0 chr1 146481132 146481341 -50714091 - L1Md_A LINE L1 0 6582 6371 7 1702 26 0 0 0 chr1 146481692 146481718 -50713714 + AT_rich Low_complexity Low_complexity 1 26 0 7 1702 1153 277 165 68 chr1 146481719 146482338 -50713094 - Lx8 LINE L1 -2 7471 6793 7 1702 443 326 83 54 chr1 146482338 146482688 -50712744 + MT2A LTR ERVL 170 529 -4 7 1702 234 353 107 35 chr1 146484849 146485046 -50710386 + MIR SINE MIR 26 236 -26 7 1702 247 296 71 16 chr1 146485135 146485262 -50710170 - Lx6 LINE L1 -46 7414 7281 7 1702 2175 221 12 14 chr1 146485274 146485706 -50709726 - Lx5 LINE L1 -202 6848 6418 7 1702 1139 153 48 139 chr1 146485701 146486089 -50709343 - L1_Mur2 LINE L1 -172 5714 5403 7 1702 3377 173 69 34 chr1 146486057 146486829 -50708603 + L1_Mur2 LINE L1 4600 5398 -479 7 1702 448 225 8 24 chr1 146487463 146487586 -50707846 + L1_Mur2 LINE L1 5126 5246 -631 7 1702 300 111 0 0 chr1 146488045 146488090 -50707342 + (A)n Simple_repeat Simple_repeat 1 45 0 7 1702 1790 115 11 4 chr1 146489762 146490041 -50705391 - L1_Mus3 LINE L1 -8 6630 6350 7 1702 5021 117 11 1 chr1 146490041 146490906 -50704526 + L1_Mus3 LINE L1 5447 6319 -317 7 1702 3151 95 19 7 chr1 146490989 146491453 -50703979 - L1_Mus3 LINE L1 0 6638 6169 7 1702 330 26 0 0 chr1 146493237 146493276 -50702156 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1702 224 315 0 0 chr1 146493278 146493332 -50702100 - RSINE1 SINE B4 -55 110 57 7 1702 4072 59 5 4 chr1 146493390 146493963 -50701469 - L1_Mus2 LINE L1 -461 6105 5532 7 1702 3780 63 0 10 chr1 146493963 146494443 -50700989 + L1_Mus2 LINE L1 6092 6566 0 7 1702 385 276 0 33 chr1 146494684 146494804 -50700628 + PB1D9 SINE Alu 5 120 0 7 1702 21 0 0 0 chr1 146495088 146495109 -50700323 + AT_rich Low_complexity Low_complexity 1 21 0 7 1702 1045 67 7 0 chr1 146496526 146496675 -50698757 - L1Md_F2 LINE L1 0 6582 6433 7 1702 412 229 49 0 chr1 146496947 146497069 -50698363 + Lx9 LINE L1 7517 7644 0 7 1702 387 325 58 75 chr1 146497596 146497769 -50697663 - B4A SINE B4 -122 170 1 7 1702 24 0 0 0 chr1 146500068 146500092 -50695340 + AT_rich Low_complexity Low_complexity 1 24 0 1 1702 2785 53 43 53 chr1 146500498 146500896 -50694536 - L1_Mus2 LINE L1 -6 6560 6167 2 1702 1082 225 35 25 chr1 146501564 146501847 -50693585 + RMER1C Other Other 1057 1342 0 3 1702 354 369 104 14 chr1 146501998 146502218 -50693214 + MER77 LTR ERVL 175 414 -193 4 1702 208 219 0 0 chr1 146503548 146503589 -50691843 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 1702 706 343 25 73 chr1 146503645 146504041 -50691391 - MTE2a LTR MaLR -2 377 1 6 1702 23 54 0 0 chr1 146504211 146504248 -50691184 + AT_rich Low_complexity Low_complexity 1 37 0 7 1702 242 280 52 22 chr1 146505248 146505383 -50690049 + L1MA6 LINE L1 6132 6270 -30 8 1702 864 223 43 29 chr1 146505526 146505734 -50689698 - ORR1C2 LTR MaLR 0 384 174 9 1702 268 202 38 19 chr1 146505737 146505843 -50689589 + GA-rich Low_complexity Low_complexity 4 111 0 1 1702 402 262 0 0 chr1 146505876 146505979 -50689453 - ORR1C2 LTR MaLR -276 108 6 9 1702 298 329 58 53 chr1 146506322 146506547 -50688885 - L2 LINE L2 -806 2613 2388 1 1702 288 0 0 0 chr1 146506747 146506779 -50688653 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1 1702 2094 182 189 22 chr1 146506926 146507477 -50687955 + RMER6C LTR ERVK 1 643 -47 1 1702 241 317 20 66 chr1 146507505 146507582 -50687850 + L1M4b LINE L1 7 84 -7250 1 1702 234 128 0 0 chr1 146507582 146507621 -50687811 + (CAAT)n Simple_repeat Simple_repeat 4 42 0 1 1702 241 317 20 66 chr1 146507621 146507695 -50687737 + L1M4b LINE L1 85 150 -7184 1 1702 263 316 26 9 chr1 146508143 146508258 -50687174 + L1M4b LINE L1 666 782 -6552 1 1702 16751 100 111 94 chr1 146508253 146508905 -50686527 + L1_Mur1 LINE L1 2350 3002 -2884 1 1702 5176 52 12 0 chr1 146508905 146509559 -50685873 + L1Md_F3 LINE L1 5909 6570 -14 1 1702 16751 100 111 94 chr1 146509559 146509910 -50685522 + L1_Mur1 LINE L1 3003 3479 -2407 1 1702 180 0 0 0 chr1 146509910 146509930 -50685502 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1702 16751 100 111 94 chr1 146509930 146510985 -50684447 + L1_Mur1 LINE L1 3480 4491 -1395 1 1702 371 113 0 0 chr1 146510985 146511038 -50684394 + B2_Mm2 SINE B2 5 57 -138 1 1702 16751 100 111 94 chr1 146511038 146511239 -50684193 + L1_Mur1 LINE L1 4492 4685 -1201 1 1702 600 14 0 0 chr1 146511239 146511308 -50684124 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 2 1702 16751 100 111 94 chr1 146511308 146512370 -50683062 + L1_Mur1 LINE L1 4686 5783 -103 1 1702 1935 128 6 53 chr1 146512370 146512726 -50682706 + Lx3A LINE L1 6640 6978 -3 2 1702 240 59 0 0 chr1 146512802 146512836 -50682596 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1702 473 292 125 44 chr1 146512858 146513202 -50682230 + L1M4b LINE L1 854 1225 -6109 1 1702 486 169 34 8 chr1 146514024 146514143 -50681289 - Lx2 LINE L1 -858 6139 6018 2 1702 428 297 123 0 chr1 146514214 146514369 -50681063 + MTD LTR MaLR 232 405 -14 2 1702 306 346 37 0 chr1 146514374 146514455 -50680977 + RSINE1 SINE B4 69 152 -13 2 1702 869 306 61 21 chr1 146514702 146515032 -50680400 + MLT2D LTR ERVL 11 353 -61 2 1702 259 283 13 27 chr1 146515076 146515225 -50680207 + (TA)n Simple_repeat Simple_repeat 2 148 0 2 1702 22 56 0 0 chr1 146515455 146515491 -50679941 + AT_rich Low_complexity Low_complexity 1 36 0 2 1702 21 36 0 0 chr1 146515552 146515580 -50679852 + AT_rich Low_complexity Low_complexity 1 28 0 2 1702 249 269 25 37 chr1 146515956 146516037 -50679395 + PB1D7 SINE Alu 41 120 0 3 1702 206 62 31 0 chr1 146516105 146516137 -50679295 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1702 372 45 45 15 chr1 146516140 146516207 -50679225 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 3 1702 2507 203 89 28 chr1 146517234 146517905 -50677527 + RMER6C LTR ERVK 1 679 -77 3 1702 285 173 39 0 chr1 146517948 146518000 -50677432 + RMER6C LTR ERVK 662 715 -5 3 1702 600 344 184 15 chr1 146518079 146518605 -50676827 - MLT1F-int LTR MaLR -95 1394 780 3 1702 392 0 0 20 chr1 146518626 146518675 -50676757 + (TCC)n Simple_repeat Simple_repeat 3 50 0 3 1702 1131 337 59 30 chr1 146519348 146519398 -50676034 + MER70A LTR ERVL 1 51 -421 3 1702 264 30 0 0 chr1 146519398 146519431 -50676001 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1702 1131 337 59 30 chr1 146519431 146519839 -50675593 + MER70A LTR ERVL 52 472 0 3 1702 628 291 12 1 chr1 146519923 146520134 -50675298 + L1_Mur3 LINE L1 3431 3680 -2466 3 1702 527 0 16 0 chr1 146520134 146520197 -50675235 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1702 234 357 24 5 chr1 146520197 146520209 -50675223 + L1_Mur3 LINE L1 3681 3691 -2455 3 1702 3546 201 46 17 chr1 146520220 146521499 -50673933 - Lx5 LINE L1 -569 6481 5156 4 1702 4289 22 2 0 chr1 146521500 146521992 -50673440 + MT2_Mm LTR ERVL 1 493 0 4 1702 47533 14 6 0 chr1 146521992 146527329 -50668103 + MERVL-int LTR ERVL 1 5371 -114 4 1702 400 123 13 40 chr1 146527329 146527405 -50668027 + ORR1A3-int LTR MaLR 567 640 -1323 4 1702 314 0 0 0 chr1 146527405 146527443 -50667989 + MERVL-int LTR ERVL 5448 5485 0 4 1702 4271 22 2 0 chr1 146527443 146527935 -50667497 + MT2_Mm LTR ERVL 1 493 0 4 1702 2152 273 49 6 chr1 146527935 146528447 -50666985 + Lx5 LINE L1 6500 7033 -17 4 1702 1380 189 52 13 chr1 146528474 146528780 -50666652 + L1_Mur3 LINE L1 3658 3975 -1905 4 1702 198 0 0 0 chr1 146528898 146528920 -50666512 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1702 27 62 0 0 chr1 146530685 146530733 -50664699 + AT_rich Low_complexity Low_complexity 1 48 0 4 1702 180 0 0 0 chr1 146530823 146530843 -50664589 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1702 261 237 0 0 chr1 146530875 146530951 -50664481 + A-rich Low_complexity Low_complexity 1 76 0 4 1702 1796 309 30 11 chr1 146530986 146531614 -50663818 - Lx7 LINE L1 -395 7301 6662 4 1702 735 303 81 60 chr1 146532277 146532437 -50662995 - MTE2a LTR MaLR 0 379 222 5 1702 755 102 8 0 chr1 146532437 146532565 -50662867 + (TC)n Simple_repeat Simple_repeat 1 129 0 5 1702 735 303 81 60 chr1 146532565 146532773 -50662659 - MTE2a LTR MaLR -158 221 3 5 1702 354 23 0 0 chr1 146532846 146532889 -50662543 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 5 1702 903 206 141 109 chr1 146534225 146534420 -50661012 - MT2A LTR ERVL -240 293 84 5 1702 183 42 0 0 chr1 146534420 146534444 -50660988 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1702 903 206 141 109 chr1 146534444 146534532 -50660900 - MT2A LTR ERVL -450 83 1 5 1702 21 71 0 0 chr1 146534647 146534689 -50660743 + AT_rich Low_complexity Low_complexity 1 42 0 5 1702 488 280 38 46 chr1 146536351 146536482 -50658950 + RSINE1 SINE B4 3 132 -33 5 1702 25 0 0 0 chr1 146537099 146537124 -50658308 + AT_rich Low_complexity Low_complexity 1 25 0 5 1703 1115 101 0 0 chr1 146539288 146539436 -50655996 - B1_Mus1 SINE Alu 0 148 1 5 1703 352 198 52 52 chr1 146541156 146541252 -50654180 - MLT1I LTR MaLR -314 97 2 5 1703 467 274 7 0 chr1 146541755 146541890 -50653542 - Lx2B LINE L1 -13 6987 6852 6 1703 692 305 5 33 chr1 146542793 146543003 -50652429 - B3 SINE B2 -7 209 6 6 1703 787 342 79 45 chr1 146543165 146543896 -50651536 + MTE-int LTR MaLR 443 1219 -361 6 1703 10187 122 7 1 chr1 146543900 146545445 -50649987 + RMER16-int LTR ERVK 2420 3973 -1433 6 1703 394 340 71 32 chr1 146545983 146546646 -50648786 + RMER16-int LTR ERVK 4325 5013 -393 6 1703 337 299 25 33 chr1 146546868 146546989 -50648443 + IAP-d-int LTR ERVK 6392 6511 -31 6 1703 24 53 0 0 chr1 146547990 146548028 -50647404 + AT_rich Low_complexity Low_complexity 1 38 0 6 1703 2853 224 8 11 chr1 146548040 146548689 -50646743 - Lx2B LINE L1 -14 6986 6340 6 1703 343 56 0 0 chr1 146548690 146548744 -50646688 - L1Md_F3 LINE L1 -31 6553 6500 6 1703 248 54 0 0 chr1 146548745 146548782 -50646650 + L1Md_F3 LINE L1 6531 6567 -17 6 1703 6431 144 27 8 chr1 146548800 146549883 -50645549 - Lx2A1 LINE L1 0 7008 5906 6 1703 5883 156 22 12 chr1 146549883 146551039 -50644393 - L1_Mur1 LINE L1 -1851 4035 2868 6 1703 200 59 29 0 chr1 146551082 146551116 -50644316 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1703 617 234 7 14 chr1 146551127 146551274 -50644158 - RMER19B LTR ERVK 0 902 757 7 1703 403 76 0 0 chr1 146551277 146551343 -50644089 - L1_Mus3 LINE L1 -2 6636 6571 7 1703 995 16 24 0 chr1 146551462 146551585 -50643847 + (TTCTC)n Simple_repeat Simple_repeat 5 130 0 7 1703 22 0 0 0 chr1 146551906 146551928 -50643504 + AT_rich Low_complexity Low_complexity 1 22 0 7 1703 219 256 38 13 chr1 146552048 146552127 -50643305 + CT-rich Low_complexity Low_complexity 1 81 0 7 1703 393 220 9 0 chr1 146553646 146553755 -50641677 - L1MC LINE L1 -1082 5064 4955 7 1703 26 0 0 0 chr1 146553755 146553781 -50641651 + AT_rich Low_complexity Low_complexity 1 26 0 7 1703 11171 15 0 0 chr1 146554021 146556015 -50639417 - L1Md_T LINE L1 0 6582 4589 7 1703 918 280 47 16 chr1 146556014 146556333 -50639099 + Lx9 LINE L1 6722 7050 -594 7 1703 239 230 39 51 chr1 146556335 146556413 -50639019 + Lx9 LINE L1 7394 7470 -174 7 1703 3530 18 0 0 chr1 146556863 146557259 -50638173 - MTA_Mm LTR MaLR 0 396 1 8 1703 1487 187 32 29 chr1 146558508 146558822 -50636610 - Lx3C LINE L1 -4 6972 6658 8 1703 3931 135 34 0 chr1 146558822 146559509 -50635923 - L1_Mur1 LINE L1 -2814 3072 2363 8 1703 2076 154 141 0 chr1 146559506 146560125 -50635307 - L1_Mur1 LINE L1 -4414 1472 742 8 1703 302 286 49 52 chr1 146560266 146560519 -50634913 - L1_Mur1 LINE L1 -6216 768 518 8 1703 203 167 0 0 chr1 146560797 146560833 -50634599 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1703 377 289 159 85 chr1 146560936 146561288 -50634144 + MLT-int LTR MaLR 13 390 -1345 8 1703 2090 242 87 26 chr1 146561313 146561404 -50634028 - RLTR20A2 LTR ERVK 0 578 490 8 1703 591 40 0 0 chr1 146561404 146561478 -50633954 + (CA)n Simple_repeat Simple_repeat 2 75 0 8 1703 2090 242 87 26 chr1 146561478 146561929 -50633503 - RLTR20A2 LTR ERVK -89 489 4 8 1703 2264 140 94 11 chr1 146561933 146562389 -50633043 - MYSERV16_I-int LTR ERVK -2 2324 1831 8 1703 2719 72 5 8 chr1 146562400 146562790 -50632642 + BGLII LTR ERVK 33 421 0 8 1703 549 342 117 11 chr1 146562790 146563071 -50632361 + MLT-int LTR MaLR 1366 1676 -59 8 1703 1407 220 49 6 chr1 146563421 146563750 -50631682 + Lx3C LINE L1 6632 6974 -2 8 1703 1265 54 6 0 chr1 146563944 146564110 -50631322 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 8 1703 370 324 29 0 chr1 146564937 146565107 -50630325 + L1MA6 LINE L1 6107 6281 -19 9 1703 22 56 0 0 chr1 146565539 146565575 -50629857 + AT_rich Low_complexity Low_complexity 1 36 0 9 1703 417 81 0 0 chr1 146565585 146565647 -50629785 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1703 775 274 90 19 chr1 146565755 146566023 -50629409 - RLTR11A2 LTR ERVK -69 458 172 9 1703 2068 218 29 15 chr1 146566024 146566223 -50629209 + Lx4B LINE L1 5549 5755 -1303 9 1703 2049 151 31 163 chr1 146566223 146566737 -50628695 + RLTR41 LTR ERV1 1 446 0 9 1703 2068 217 28 15 chr1 146566737 146567038 -50628394 + Lx4B LINE L1 5756 6061 -997 9 1703 192 135 0 0 chr1 146568196 146568233 -50627199 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1703 241 266 31 15 chr1 146568319 146568384 -50627048 - B4 SINE B4 -226 66 1 9 1703 561 118 39 10 chr1 146568586 146568689 -50626743 + ORR1A2-int LTR MaLR 1231 1336 -627 9 1703 24 0 0 0 chr1 146568755 146568779 -50626653 + AT_rich Low_complexity Low_complexity 1 24 0 9 1703 35 92 0 0 chr1 146569258 146569356 -50626076 + AT_rich Low_complexity Low_complexity 1 98 0 1 1703 204 40 0 0 chr1 146569356 146569381 -50626051 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1703 485 86 0 0 chr1 146569481 146569551 -50625881 + ORR1A2 LTR MaLR 1 70 -257 9 1703 1118 232 54 31 chr1 146569553 146569904 -50625528 + RLTR10D LTR ERVK 1 359 0 1 1703 4326 73 12 0 chr1 146569919 146570496 -50624936 + L1Md_F2 LINE L1 5997 6580 -2 1 1703 5248 135 15 101 chr1 146570503 146571526 -50623906 + ORR1A2-int LTR MaLR 1029 1963 0 1 1703 2019 144 12 0 chr1 146571526 146571845 -50623587 + ORR1A2 LTR MaLR 1 323 -4 1 1703 390 91 0 0 chr1 146572183 146572238 -50623194 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1703 1476 82 19 0 chr1 146573569 146573775 -50621657 + L1Md_T LINE L1 6370 6579 -3 1 1703 24 0 0 0 chr1 146574111 146574135 -50621297 + AT_rich Low_complexity Low_complexity 1 24 0 1 1703 444 37 0 0 chr1 146574596 146574650 -50620782 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 1 1703 1540 114 46 4 chr1 146574650 146574888 -50620544 - Lx3A LINE L1 -18 6963 6716 1 1703 423 0 0 0 chr1 146575401 146575448 -50619984 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1703 22 56 0 0 chr1 146575593 146575629 -50619803 + AT_rich Low_complexity Low_complexity 1 36 0 1 1703 284 216 11 33 chr1 146575791 146575882 -50619550 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 1 1703 269 215 108 0 chr1 146575937 146576002 -50619430 - B4 SINE B4 -20 272 201 1 1703 967 193 56 131 chr1 146576226 146576584 -50618848 - Lx7 LINE L1 -2 7694 7364 1 1703 414 0 0 0 chr1 146576748 146576794 -50618638 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1703 750 29 19 9 chr1 146576798 146576904 -50618528 + (TG)n Simple_repeat Simple_repeat 1 107 0 1 1703 1333 210 83 34 chr1 146576912 146576946 -50618486 - L1_Mur3 LINE L1 -3821 2059 2031 1 1703 685 235 136 48 chr1 146576946 146577201 -50618231 + RMER17C LTR ERVK 3 280 -130 1 1703 486 0 0 0 chr1 146577201 146577255 -50618177 + (CTATT)n Simple_repeat Simple_repeat 3 56 0 1 1703 685 235 136 48 chr1 146577255 146577374 -50618058 + RMER17C LTR ERVK 281 409 -1 1 1703 1333 210 83 34 chr1 146577374 146577723 -50617709 - L1_Mur3 LINE L1 -3850 2030 1657 1 1703 2295 183 155 79 chr1 146577784 146578098 -50617334 - RMER12 LTR ERVK -125 1197 816 1 1703 333 0 0 0 chr1 146578098 146578135 -50617297 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1703 2295 207 216 75 chr1 146578135 146578888 -50616544 - RMER12 LTR ERVK -507 815 1 1 1703 1621 186 42 11 chr1 146578893 146579273 -50616159 - L1_Mur3 LINE L1 -4221 1659 1268 1 1703 436 202 48 0 chr1 146579294 146579398 -50616034 - L1_Mur3 LINE L1 -6566 1162 1054 1 1703 6538 68 30 2 chr1 146579396 146580527 -50614905 - L1Md_F2 LINE L1 -84 6498 5340 1 1703 1323 272 70 40 chr1 146580926 146581454 -50613978 - L1_Mur3 LINE L1 -7130 598 55 1 1703 616 164 58 66 chr1 146582121 146582258 -50613174 - B1_Mur4 SINE Alu 0 150 15 1 1703 1659 106 30 11 chr1 146582374 146582641 -50612791 - Lx LINE L1 -5 6649 6378 1 1703 243 0 0 0 chr1 146583265 146583292 -50612140 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1703 975 54 0 0 chr1 146583292 146583421 -50612011 + (GA)n Simple_repeat Simple_repeat 1 130 0 1 1703 7531 132 37 29 chr1 146583785 146585122 -50610310 - Lx3C LINE L1 -2 6974 5628 1 1703 682 291 14 14 chr1 146585602 146585811 -50609621 - B3 SINE B2 -7 209 1 1 1703 21 0 0 0 chr1 146586171 146586192 -50609240 + AT_rich Low_complexity Low_complexity 1 21 0 1 1703 465 94 0 0 chr1 146586309 146586373 -50609059 + L1Md_A LINE L1 262 325 -6291 1 1703 35382 50 4 18 chr1 146586374 146591574 -50603858 + L1Md_A LINE L1 466 5586 -297 1 1703 8383 31 1 0 chr1 146591574 146592569 -50602863 + L1Md_A LINE L1 5587 6582 0 1 1703 21 57 0 0 chr1 146592775 146592810 -50602622 + AT_rich Low_complexity Low_complexity 1 35 0 1 1703 692 213 0 19 chr1 146593458 146593616 -50601816 + L1_Mur1 LINE L1 206 360 -6622 1 1703 487 107 0 0 chr1 146593619 146593694 -50601738 + Lx3A LINE L1 4150 4224 -1653 1 1703 973 138 6 25 chr1 146593699 146593842 -50601590 - B2_Mm2 SINE B2 -31 164 22 1 1703 1794 146 3 3 chr1 146593842 146594137 -50601295 + Lx LINE L1 6354 6648 -6 1 1703 973 138 6 25 chr1 146594137 146594156 -50601276 - B2_Mm2 SINE B2 -174 21 5 1 1703 10606 91 16 42 chr1 146594157 146595865 -50599567 + Lx3A LINE L1 4245 5906 -1075 1 1703 363 23 0 0 chr1 146595865 146595909 -50599523 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1703 7939 128 52 14 chr1 146595909 146596926 -50598506 + Lx3A LINE L1 5907 6976 -5 1 1703 33 66 0 0 chr1 146597025 146597086 -50598346 + AT_rich Low_complexity Low_complexity 1 61 0 1 1703 342 0 0 0 chr1 146597712 146597750 -50597682 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1703 207 0 0 0 chr1 146597750 146597772 -50597660 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1703 1217 230 82 35 chr1 146597772 146598115 -50597317 - Lx7 LINE L1 -281 7415 7057 1 1703 258 281 311 0 chr1 146598458 146598593 -50596839 + ORR1E LTR MaLR 1 177 -182 1 1703 1032 113 0 14 chr1 146598973 146599117 -50596315 - B1_Mus1 SINE Alu -5 143 2 1 1703 544 341 13 64 chr1 146599130 146599365 -50596067 + MT2A LTR ERVL 172 394 -139 1 1703 21 57 0 0 chr1 146599683 146599718 -50595714 + AT_rich Low_complexity Low_complexity 1 35 0 1 1703 459 308 58 43 chr1 146602540 146602679 -50592753 - RSINE1 SINE B4 -16 149 9 1 1703 24 0 0 0 chr1 146603408 146603432 -50592000 + AT_rich Low_complexity Low_complexity 1 24 0 1 1703 896 259 35 8 chr1 146603738 146603999 -50591433 + Lx7 LINE L1 6923 7190 -506 1 1703 1785 119 0 8 chr1 146603997 146604260 -50591172 - L1_Mus4 LINE L1 -224 6412 6152 1 1703 2183 108 44 9 chr1 146604250 146604652 -50590780 + L1_Mus4 LINE L1 5525 5937 -699 1 1703 216 0 0 0 chr1 146604659 146604683 -50590749 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1703 460 125 0 36 chr1 146604710 146604793 -50590639 - B1_Mur3 SINE Alu 0 149 70 1 1703 381 240 92 161 chr1 146604816 146605089 -50590343 + Lx7 LINE L1 7240 7493 -203 1 1703 437 343 29 19 chr1 146605336 146605541 -50589891 + Lx6 LINE L1 7107 7313 -147 1 1703 819 277 120 8 chr1 146605672 146606210 -50589222 + L1_Mur2 LINE L1 3083 3666 -2477 1 1703 279 277 53 0 chr1 146606335 146606429 -50589003 + L1_Mur2 LINE L1 3679 3777 -2103 1 1703 1178 329 104 38 chr1 146606436 146607924 -50587508 + L1_Mur2 LINE L1 4232 5817 -60 1 1703 426 39 0 0 chr1 146607930 146607982 -50587450 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1703 868 319 62 32 chr1 146607997 146608466 -50586966 + Lx8 LINE L1 6448 6930 -543 1 1703 30 0 0 0 chr1 146608580 146608610 -50586822 + AT_rich Low_complexity Low_complexity 1 30 0 1 1703 406 367 88 0 chr1 146608640 146608787 -50586645 + B3A SINE B2 3 162 -36 1 1703 423 0 0 0 chr1 146608790 146608837 -50586595 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1703 832 212 83 26 chr1 146609002 146609230 -50586202 - Lx9 LINE L1 -162 7482 7242 1 1703 22 0 0 0 chr1 146609830 146609852 -50585580 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 249 295 77 0 chr1 146610427 146610534 -50584898 + MLT1D LTR MaLR 51 177 -450 1 1703 321 333 48 18 chr1 146610745 146610910 -50584522 + MLT1D LTR MaLR 329 498 -7 1 1703 206 75 18 70 chr1 146612981 146613038 -50582394 + A-rich Low_complexity Low_complexity 2 55 0 1 1703 4675 90 5 3 chr1 146614696 146615332 -50580100 - L1_Mus2 LINE L1 -1 6565 5929 1 1703 1319 85 11 0 chr1 146615877 146616054 -50579378 + B2_Mm1t SINE B2 1 179 -14 1 1703 217 109 191 21 chr1 146616086 146616133 -50579299 + B2_Mm2 SINE B2 47 101 -94 1 1703 204 40 0 0 chr1 146616155 146616180 -50579252 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1703 669 232 112 11 chr1 146616493 146616672 -50578760 + B3 SINE B2 20 216 0 1 1703 543 78 0 0 chr1 146618332 146618409 -50577023 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1703 355 271 157 9 chr1 146618416 146618639 -50576793 + L1MA5 LINE L1 5726 5981 -319 1 1703 399 339 16 24 chr1 146618899 146619023 -50576409 - ID_B1 SINE B4 -9 215 93 1 1703 225 0 0 0 chr1 146619353 146619378 -50576054 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1 1703 386 248 0 54 chr1 146619765 146619914 -50575518 + Lx9 LINE L1 7503 7643 -1 1 1703 31 26 0 0 chr1 146619967 146620005 -50575427 + AT_rich Low_complexity Low_complexity 1 38 0 1 1703 1275 110 29 5 chr1 146620005 146620215 -50575217 - Lx3_Mus LINE L1 0 7009 6795 1 1703 414 0 0 0 chr1 146620959 146621005 -50574427 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1703 22 0 0 0 chr1 146621340 146621362 -50574070 + AT_rich Low_complexity Low_complexity 1 22 0 1 1703 32 26 0 0 chr1 146623430 146623469 -50571963 + AT_rich Low_complexity Low_complexity 1 39 0 1 1703 2583 234 18 20 chr1 146623763 146623935 -50571497 - Lx5 LINE L1 -379 6671 6498 1 1703 5038 124 28 71 chr1 146623935 146624878 -50570554 + RLTR13D6 LTR ERVK 1 902 0 1 1703 2583 234 18 20 chr1 146624878 146625314 -50570118 - Lx5 LINE L1 -553 6497 6064 1 1703 429 162 0 0 chr1 146625601 146625712 -50569720 + CT-rich Low_complexity Low_complexity 1 111 0 1 1703 378 0 0 0 chr1 146625714 146625756 -50569676 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1703 186 43 0 0 chr1 146626564 146626587 -50568845 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1703 309 227 36 0 chr1 146626601 146626711 -50568721 + Lx9 LINE L1 7528 7641 -3 1 1703 228 339 155 16 chr1 146628527 146628779 -50566653 + LTR37A LTR ERV1 39 325 -101 1 1703 713 313 74 68 chr1 146628999 146629366 -50566066 - MTE2a LTR MaLR -1 378 10 1 1703 1826 244 127 8 chr1 146629533 146630170 -50565262 - Lx9 LINE L1 0 7644 6932 1 1703 2423 54 15 0 chr1 146630602 146631099 -50564333 + RLTR10C LTR ERVK 1 436 0 1 1703 1417 47 0 0 chr1 146631099 146631271 -50564161 + MMERVK10C-int LTR ERVK 1 172 -7409 1 1703 243 283 0 0 chr1 146631271 146631324 -50564108 + RLTR27 LTR ERVK 223 275 -34 1 1703 389 0 0 0 chr1 146631324 146631367 -50564065 + MMERVK10C-int LTR ERVK 225 267 -7314 1 1703 273 183 0 58 chr1 146631449 146631536 -50563896 + A-rich Low_complexity Low_complexity 3 84 0 1 1703 355 67 0 0 chr1 146631536 146631581 -50563851 + MMERVK10C-int LTR ERVK 93 137 -6405 1 1703 1940 49 0 2 chr1 146631584 146632019 -50563413 + MMERVK10C-int LTR ERVK 652 887 -1100 1 1703 8823 35 0 0 chr1 146632012 146633033 -50562399 + MMERVK10C-int LTR ERVK 4790 5810 -1771 1 1703 8070 32 2 0 chr1 146633019 146633953 -50561479 + MMERVK10C-int LTR ERVK 6646 7581 0 1 1703 3377 44 0 128 chr1 146633953 146634453 -50560979 + RLTR10C LTR ERVK 1 436 0 1 1703 349 133 13 13 chr1 146634677 146634753 -50560679 + CT-rich Low_complexity Low_complexity 1 76 0 1 1703 1728 140 39 0 chr1 146635052 146635140 -50560292 - RLTR20A LTR ERVK -2 539 452 1 1703 753 12 0 0 chr1 146635140 146635226 -50560206 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1703 1728 140 39 0 chr1 146635226 146635416 -50560016 - RLTR20A LTR ERVK -90 451 251 1 1703 594 0 0 0 chr1 146635421 146635487 -50559945 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1703 671 208 154 0 chr1 146635497 146635646 -50559786 - RLTR20A LTR ERVK -369 172 1 1 1703 5573 174 60 34 chr1 146635711 146637783 -50557649 - MYSERV16_I-int LTR ERVK -75 2251 1 1 1703 23 0 0 0 chr1 146638430 146638453 -50556979 + AT_rich Low_complexity Low_complexity 1 23 0 1 1703 456 100 0 0 chr1 146638663 146638743 -50556689 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1703 2863 80 17 39 chr1 146638953 146639369 -50556063 - L1_Mus2 LINE L1 0 6566 6160 1 1703 2002 39 43 0 chr1 146639369 146639626 -50555806 + L1_Mus2 LINE L1 5875 6142 -424 1 1703 2841 186 7 36 chr1 146639722 146640279 -50555153 - RLTR20A LTR ERVK 0 541 1 1 1703 412 340 64 25 chr1 146640565 146640924 -50554508 - L1MD3 LINE L1 -49 7946 7574 2 1703 2886 270 58 62 chr1 146640972 146642141 -50553291 - L1_Rod LINE L1 -1028 4819 3656 2 1703 186 71 0 0 chr1 146642141 146642169 -50553263 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1703 2886 245 42 35 chr1 146642169 146642803 -50552629 - L1_Rod LINE L1 -2192 3655 3281 2 1703 1684 141 11 0 chr1 146642805 146643082 -50552350 - Lx LINE L1 -6 6648 6369 2 1703 558 195 141 0 chr1 146643082 146643210 -50552222 - L1_Mm LINE L1 -533 5350 5205 2 1703 770 115 11 36 chr1 146643209 146643431 -50552001 - L1_Mur3 LINE L1 -1902 2012 1900 2 1703 1436 330 16 35 chr1 146643447 146644119 -50551313 + Lx6 LINE L1 6455 7432 -28 2 1703 333 306 58 48 chr1 146644119 146644497 -50550935 - L1_Rod LINE L1 -2558 3289 2908 2 1703 27 81 0 0 chr1 146644544 146644606 -50550826 + AT_rich Low_complexity Low_complexity 1 62 0 2 1703 552 30 0 0 chr1 146644629 146644695 -50550737 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1703 386 252 32 24 chr1 146644724 146644850 -50550582 + Lx9 LINE L1 5017 5143 -704 2 1703 762 286 133 4 chr1 146644851 146645107 -50550325 + Lx6 LINE L1 7003 7291 -169 2 1703 1331 268 81 22 chr1 146645576 146646143 -50549289 + Lx9 LINE L1 5329 5962 -1682 2 1703 341 295 35 46 chr1 146646361 146646526 -50548906 + Lx9 LINE L1 6172 6472 -1172 2 1703 1085 322 79 55 chr1 146646524 146647433 -50547999 + Lx9 LINE L1 6574 7514 -130 2 1703 252 86 0 0 chr1 146647433 146647468 -50547964 + (CATA)n Simple_repeat Simple_repeat 4 38 0 2 1703 1085 322 79 55 chr1 146647468 146647603 -50547829 + Lx9 LINE L1 7515 7644 0 2 1703 428 364 38 83 chr1 146647681 146647733 -50547699 + L1MCb LINE L1 95 134 -5911 2 1703 228 86 0 0 chr1 146647733 146647768 -50547664 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1703 428 364 38 83 chr1 146647768 146648087 -50547345 + L1MCb LINE L1 135 449 -5596 2 1703 1159 75 0 0 chr1 146648482 146648628 -50546804 + B1_Mm SINE Alu 2 147 0 2 1703 629 25 13 0 chr1 146648631 146648710 -50546722 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1703 285 51 0 0 chr1 146649493 146649532 -50545900 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1703 224 185 0 58 chr1 146649655 146649741 -50545691 + T-rich Low_complexity Low_complexity 5 85 0 2 1703 1033 101 0 0 chr1 146649887 146650026 -50545406 - B1_Mus1 SINE Alu -9 139 1 2 1703 837 335 44 40 chr1 146650041 146650564 -50544868 - Lx9 LINE L1 -221 7423 6899 2 1703 216 358 62 27 chr1 146650617 146650729 -50544703 - B4A SINE B4 -172 120 5 2 1703 549 360 18 14 chr1 146650740 146650957 -50544475 - B4A SINE B4 -71 221 4 2 1703 567 78 0 0 chr1 146651078 146651155 -50544277 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1703 21 57 0 0 chr1 146651197 146651232 -50544200 + AT_rich Low_complexity Low_complexity 1 35 0 2 1703 356 347 155 9 chr1 146651460 146651780 -50543652 + MLT1A1 LTR MaLR 1 405 -3 2 1703 1898 181 35 0 chr1 146652159 146652590 -50542842 + Lx2B LINE L1 5494 5943 -1057 2 1703 2453 38 0 0 chr1 146652602 146652891 -50542541 - L1_Mus1 LINE L1 -689 5878 5590 2 1703 4728 89 16 3 chr1 146652909 146653574 -50541858 + L1_Mus1 LINE L1 5894 6567 0 2 1703 285 290 16 31 chr1 146653583 146653711 -50541721 + Lx2B LINE L1 5948 6073 -985 2 1703 1461 198 42 6 chr1 146653719 146654054 -50541378 + Lx4B LINE L1 6022 6368 -690 2 1703 38547 5 0 0 chr1 146654052 146659410 -50536022 + L1Md_A LINE L1 228 5586 -297 2 1703 9024 2 0 0 chr1 146659410 146660406 -50535026 + L1Md_A LINE L1 5587 6582 0 2 1703 2164 238 74 26 chr1 146660410 146661009 -50534423 + Lx3C LINE L1 6365 7000 0 2 1703 293 345 34 46 chr1 146661361 146661598 -50533834 - Charlie23a DNA MER1_type -66 273 40 2 1703 532 336 7 0 chr1 146661970 146662113 -50533319 + RSINE1 SINE B4 7 150 -15 2 1703 1220 34 0 0 chr1 146662362 146662509 -50532923 - B1_Mm SINE Alu 0 147 1 2 1703 22 35 0 0 chr1 146662761 146662790 -50532642 + AT_rich Low_complexity Low_complexity 1 29 0 2 1703 577 269 43 11 chr1 146663891 146664075 -50531357 + MIR SINE MIR 52 241 -21 2 1703 21 0 0 0 chr1 146665591 146665612 -50529820 + AT_rich Low_complexity Low_complexity 1 21 0 2 1703 1079 103 0 0 chr1 146665821 146665967 -50529465 + B1_Mus1 SINE Alu 2 147 -1 2 1703 181 175 35 0 chr1 146667179 146667214 -50528218 + CT-rich Low_complexity Low_complexity 23 59 0 2 1703 639 26 0 0 chr1 146667214 146667291 -50528141 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2 1703 181 175 35 0 chr1 146667291 146667312 -50528120 + polypyrimidine Low_complexity Low_complexity 2 22 0 2 1703 480 72 0 0 chr1 146667379 146667448 -50527984 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2 1703 1462 234 46 35 chr1 146667510 146667966 -50527466 - RCHARR1 DNA MER1_type -105 869 409 2 1703 446 33 17 0 chr1 146667998 146668058 -50527374 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 2 1704 201 94 0 0 chr1 146669634 146669666 -50525766 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 2 1704 4005 116 31 7 chr1 146669694 146670309 -50525123 + Lx LINE L1 6024 6653 -1 2 1704 8247 5 0 0 chr1 146670508 146671464 -50523968 - L1Md_T LINE L1 0 6582 5627 2 1704 542 154 22 14 chr1 146671464 146671602 -50523830 - L1_Mus4 LINE L1 -19 6617 6479 2 1704 272 146 0 0 chr1 146671603 146671651 -50523781 + L1_Mus4 LINE L1 6418 6465 -171 2 1704 678 315 42 34 chr1 146672863 146673126 -50522306 - Tigger1 DNA MER2_type -278 2140 1876 2 1704 752 307 43 10 chr1 146673147 146673450 -50521982 - Tigger1 DNA MER2_type -1586 832 520 2 1704 22 0 0 0 chr1 146673481 146673503 -50521929 + AT_rich Low_complexity Low_complexity 1 22 0 2 1704 194 0 0 37 chr1 146673606 146673633 -50521799 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1704 1082 102 6 17 chr1 146673659 146673838 -50521594 - L1_Mus3 LINE L1 -6 6632 6456 2 1704 555 331 6 18 chr1 146673850 146674019 -50521413 + MTE2a LTR MaLR 208 374 -5 2 1704 244 320 13 0 chr1 146674031 146674109 -50521323 + Tigger5 DNA MER2_type 2325 2403 -3 2 1704 342 169 0 0 chr1 146674407 146674472 -50520960 + (CAG)n Simple_repeat Simple_repeat 1 65 0 2 1704 2000 194 87 5 chr1 146674516 146674905 -50520527 - MTC LTR MaLR 0 421 1 2 1704 1904 130 13 3 chr1 146675300 146675600 -50519832 + L1_Mus3 LINE L1 6328 6630 -8 2 1704 600 81 0 0 chr1 146675725 146675812 -50519620 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 2 1704 440 316 62 38 chr1 146676031 146676271 -50519161 - L1M2 LINE L1 -2819 3324 3079 2 1704 273 359 43 34 chr1 146676362 146676947 -50518485 - L1M2 LINE L1 -3136 3007 2418 2 1704 300 27 0 0 chr1 146677089 146677126 -50518306 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1704 363 189 83 10 chr1 146677133 146677229 -50518203 - Lx9 LINE L1 -179 7465 7363 2 1704 270 271 0 0 chr1 146677442 146677549 -50517883 - Lx9 LINE L1 -7 7637 7531 2 1704 423 0 0 0 chr1 146677556 146677603 -50517829 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1704 343 278 136 0 chr1 146677603 146677779 -50517653 - Lx9 LINE L1 -157 7487 7288 2 1704 5624 278 35 79 chr1 146678028 146678182 -50517250 - RMER12B LTR ERVK -6 1398 1200 2 1704 636 14 0 0 chr1 146678182 146678255 -50517177 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1704 5624 183 56 18 chr1 146678255 146679405 -50516027 - RMER12B LTR ERVK -205 1199 3 2 1704 1938 93 11 4 chr1 146679516 146679787 -50515645 - L1_Mus2 LINE L1 -1 6565 6293 2 1704 412 126 23 0 chr1 146680811 146680898 -50514534 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1704 26 0 0 0 chr1 146681512 146681538 -50513894 + AT_rich Low_complexity Low_complexity 1 26 0 2 1704 714 82 0 0 chr1 146681824 146681922 -50513510 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 2 1704 314 352 78 18 chr1 146682115 146682332 -50513100 + MER31B LTR ERV1 237 466 0 2 1704 321 131 0 0 chr1 146683433 146683494 -50511938 + (T)n Simple_repeat Simple_repeat 1 61 0 2 1704 755 58 19 0 chr1 146683504 146683606 -50511826 - B1_Mus2 SINE Alu 0 147 44 2 1704 1278 112 15 25 chr1 146683606 146683808 -50511624 - RLTR27 LTR ERVK 0 309 110 2 1704 1234 181 8 27 chr1 146683811 146684067 -50511365 - MMERVK10C-int LTR ERVK -10 7571 7321 2 1704 286 279 9 9 chr1 146684201 146684306 -50511126 - MMERVK10C-int LTR ERVK -512 7069 6965 2 1704 2656 304 34 42 chr1 146684583 146686422 -50509010 - MMERVK10C-int LTR ERVK -2104 5477 3654 2 1704 212 122 0 24 chr1 146686487 146686529 -50508903 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 2 1704 263 253 0 37 chr1 146686720 146686802 -50508630 + T-rich Low_complexity Low_complexity 2 80 0 2 1704 538 221 61 61 chr1 146686817 146687015 -50508417 - RLTR10-int LTR ERVK -1135 852 655 2 1704 290 54 0 0 chr1 146687058 146687095 -50508337 - RLTR10-int LTR ERVK -7320 261 225 2 1704 1887 151 10 19 chr1 146687130 146687441 -50507991 - RLTR27 LTR ERVK 0 309 2 2 1704 528 269 0 0 chr1 146687444 146687585 -50507847 + (CCTG)n Simple_repeat Simple_repeat 2 142 0 2 1704 371 117 0 62 chr1 146687586 146687650 -50507782 - B1_Mus1 SINE Alu -88 60 1 2 1704 32 0 0 0 chr1 146687835 146687867 -50507565 + AT_rich Low_complexity Low_complexity 1 32 0 2 1704 18147 143 82 11 chr1 146687867 146693813 -50501619 - L1Md_F2 LINE L1 -14 6568 163 2 1704 258 136 0 0 chr1 146693939 146693983 -50501449 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1704 243 0 0 0 chr1 146693983 146694010 -50501422 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1704 366 127 0 0 chr1 146694225 146694296 -50501136 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1704 288 171 0 0 chr1 146694296 146694378 -50501054 + GA-rich Low_complexity Low_complexity 1 82 0 2 1704 226 312 12 12 chr1 146694456 146694537 -50500895 + CT-rich Low_complexity Low_complexity 1 81 0 2 1704 3334 241 47 12 chr1 146694540 146694563 -50500869 - Lx5 LINE L1 -3 7047 7030 2 1704 3459 28 0 0 chr1 146694563 146694959 -50500473 + MTA_Mm LTR MaLR 1 396 0 2 1704 3334 241 47 12 chr1 146694959 146695759 -50499673 - Lx5 LINE L1 -21 7029 6195 2 1704 2057 224 53 4 chr1 146695762 146696000 -50499432 + Lx5 LINE L1 5365 5611 -266 2 1704 396 0 0 0 chr1 146696000 146696044 -50499388 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1704 2361 205 18 34 chr1 146696044 146696610 -50498822 + Lx5 LINE L1 5612 6190 -860 2 1704 277 229 28 9 chr1 146697397 146697503 -50497929 - Lx9 LINE L1 -6 7638 7531 2 1704 3840 148 39 11 chr1 146697509 146698174 -50497258 + RLTR25A LTR ERVK 1 670 -433 2 1704 591 235 167 38 chr1 146698174 146698413 -50497019 + Lx9 LINE L1 7070 7339 -305 2 1704 25 31 0 0 chr1 146699329 146699361 -50496071 + AT_rich Low_complexity Low_complexity 1 32 0 2 1704 3436 77 53 0 chr1 146701310 146701803 -50493629 + L1_Mus2 LINE L1 5872 6390 -176 2 1704 2878 52 0 13 chr1 146701804 146702176 -50493256 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1704 53696 17 16 1 chr1 146702176 146708552 -50486880 - IAPEz-int LTR ERVK 0 6481 8 2 1704 2868 55 0 13 chr1 146708552 146708924 -50486508 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1704 1426 66 0 0 chr1 146708924 146709106 -50486326 + L1_Mus1 LINE L1 6386 6567 0 2 1704 1787 168 96 5 chr1 146710778 146711162 -50484270 + Lx3C LINE L1 6555 6973 -3 2 1704 21 0 0 0 chr1 146711300 146711321 -50484111 + AT_rich Low_complexity Low_complexity 1 21 0 2 1704 767 296 113 49 chr1 146712187 146712514 -50482918 + ORR1E LTR MaLR 1 348 -11 3 1704 225 0 0 0 chr1 146712515 146712540 -50482892 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1704 1139 174 38 0 chr1 146712730 146712943 -50482489 - Lx2 LINE L1 -2 6995 6775 3 1704 941 121 0 0 chr1 146712941 146713081 -50482351 - Lx2 LINE L1 -352 6645 6506 3 1704 7564 42 2 2 chr1 146713080 146714640 -50480792 - L1Md_F2 LINE L1 -2 6580 5023 3 1704 2312 93 44 22 chr1 146714636 146714999 -50480433 - Lx2 LINE L1 -487 6510 6140 3 1704 535 314 153 53 chr1 146715249 146715629 -50479803 - MLT1C LTR MaLR -10 457 40 3 1704 1141 136 17 0 chr1 146715666 146715843 -50479589 - B2_Mm2 SINE B2 -14 181 2 3 1704 938 109 0 7 chr1 146716449 146716596 -50478836 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 3 1704 1237 117 6 0 chr1 146716604 146716784 -50478648 - B2_Mm1t SINE B2 -9 184 4 3 1704 375 256 69 32 chr1 146716813 146717059 -50478373 + L1MA6 LINE L1 6046 6300 0 3 1704 25 0 0 0 chr1 146717621 146717646 -50477786 + AT_rich Low_complexity Low_complexity 1 25 0 3 1704 2759 90 140 0 chr1 146719490 146719984 -50475448 - L1_Mus3 LINE L1 -544 6094 5532 3 1704 694 72 49 28 chr1 146719987 146720130 -50475302 + L1_Mus3 LINE L1 6493 6638 0 3 1704 302 267 73 37 chr1 146720264 146720373 -50475059 + L1MEf LINE L1 35 147 -6053 3 1704 315 58 0 0 chr1 146720820 146720872 -50474560 - L1_Mus4 LINE L1 -2 6634 6583 3 1704 446 337 92 90 chr1 146721165 146721521 -50473911 + MLT2B2 LTR ERVL 8 364 -237 3 1704 210 37 0 0 chr1 146721935 146721962 -50473470 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1704 438 234 0 0 chr1 146722074 146722249 -50473183 + (CCA)n Simple_repeat Simple_repeat 1 175 0 3 1704 795 103 15 7 chr1 146723644 146723781 -50471651 + L1_Mus4 LINE L1 6483 6620 -16 3 1704 519 138 0 0 chr1 146723781 146723868 -50471564 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1704 183 100 0 0 chr1 146724283 146724313 -50471119 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1704 279 0 0 0 chr1 146724369 146724400 -50471032 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 3 1704 2474 237 14 30 chr1 146724400 146724969 -50470463 - Lx5 LINE L1 -14 7036 6477 3 1704 2599 257 174 14 chr1 146725574 146726135 -50469297 - Lx6 LINE L1 -35 7425 6757 3 1704 324 48 0 0 chr1 146726135 146726177 -50469255 + (CAT)n Simple_repeat Simple_repeat 3 44 0 3 1704 2599 257 174 14 chr1 146726177 146726444 -50468988 - Lx6 LINE L1 -704 6756 6465 3 1704 2437 119 6 3 chr1 146726826 146727187 -50468245 - Lx2 LINE L1 -388 6609 6248 3 1704 25 0 0 0 chr1 146727612 146727637 -50467795 + AT_rich Low_complexity Low_complexity 1 25 0 3 1704 4633 67 2 5 chr1 146727928 146728516 -50466916 - L1_Mus2 LINE L1 -1 6565 5980 3 1704 254 73 0 24 chr1 146728697 146728739 -50466693 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1704 899 29 0 0 chr1 146728962 146729066 -50466366 + L1Md_T LINE L1 5483 5586 -297 3 1704 8362 33 2 0 chr1 146729066 146730060 -50465372 + L1Md_T LINE L1 5587 6582 0 3 1704 354 45 0 0 chr1 146730477 146730521 -50464911 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1704 393 22 0 0 chr1 146731933 146731979 -50463453 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1704 8079 116 41 12 chr1 146732031 146733336 -50462096 - Lx3B LINE L1 -9 6964 5622 3 1704 14302 141 39 23 chr1 146733339 146734517 -50460915 - L1_Mur1 LINE L1 -1912 3974 2793 3 1704 1065 122 0 0 chr1 146734517 146734664 -50460768 - B1_Mus2 SINE Alu 0 147 1 3 1704 225 83 0 0 chr1 146734667 146734703 -50460729 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1704 14302 141 39 23 chr1 146734703 146736046 -50459386 - L1_Mur1 LINE L1 -3094 2792 1421 3 1704 192 40 0 0 chr1 146736046 146736071 -50459361 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 1704 14302 186 34 42 chr1 146736071 146737006 -50458426 - L1_Mur1 LINE L1 -4466 1420 519 3 1704 1096 142 11 0 chr1 146737091 146737267 -50458165 + ORR1A2 LTR MaLR 92 269 -58 3 1704 378 0 0 0 chr1 146737431 146737473 -50457959 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1704 24 32 0 0 chr1 146737844 146737875 -50457557 + AT_rich Low_complexity Low_complexity 1 31 0 3 1704 27 0 0 0 chr1 146738501 146738528 -50456904 + AT_rich Low_complexity Low_complexity 1 27 0 3 1704 23 78 0 0 chr1 146739158 146739209 -50456223 + AT_rich Low_complexity Low_complexity 1 51 0 3 1704 223 328 43 29 chr1 146739236 146739305 -50456127 + BC1_Mm scRNA scRNA 2 71 -81 3 1704 235 317 113 40 chr1 146739391 146739542 -50455890 - MLT1J LTR MaLR -181 331 170 3 1704 406 264 154 35 chr1 146739725 146739894 -50455538 - B3A SINE B2 -2 193 5 3 1704 399 98 0 0 chr1 146739973 146740034 -50455398 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1704 297 0 0 0 chr1 146740728 146740761 -50454671 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1704 641 320 111 14 chr1 146741195 146741483 -50453949 - ORR1E LTR MaLR -6 353 38 3 1704 237 355 34 74 chr1 146742037 146742186 -50453246 + MER21B LTR ERV1 490 632 -231 3 1704 690 323 66 81 chr1 146742962 146743282 -50452150 - MTEa LTR MaLR -33 346 32 3 1704 1666 80 4 0 chr1 146743548 146743774 -50451658 - L1_Mus2 LINE L1 0 6566 6340 3 1704 280 295 51 0 chr1 146743817 146743895 -50451537 - RSINE1 SINE B4 -29 136 55 3 1704 220 319 0 0 chr1 146743921 146743990 -50451442 - PB1D10 SINE Alu -22 95 27 3 1704 5364 229 28 10 chr1 146744068 146745217 -50450215 - Lx5 LINE L1 0 7050 5881 3 1704 891 303 0 0 chr1 146745483 146745681 -50449751 - B3 SINE B2 -10 206 9 3 1704 303 332 90 86 chr1 146746158 146746367 -50449065 - HAL1-3A_ME LINE L1 -638 2220 2007 3 1704 333 0 0 0 chr1 146746367 146746404 -50449028 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1704 384 22 0 0 chr1 146746404 146746448 -50448984 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1704 303 332 90 86 chr1 146746448 146746481 -50448951 - HAL1-3A_ME LINE L1 -852 2006 1977 3 1704 202 222 0 18 chr1 146746483 146746538 -50448894 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1704 357 154 0 0 chr1 146746842 146746933 -50448499 + T-rich Low_complexity Low_complexity 1 91 0 3 1704 201 147 0 0 chr1 146747825 146747859 -50447573 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1704 1804 200 31 60 chr1 146747902 146748317 -50447115 - MTC LTR MaLR -18 403 1 3 1704 277 210 0 0 chr1 146748871 146748933 -50446499 + CT-rich Low_complexity Low_complexity 1 62 0 3 1704 303 340 18 28 chr1 146749274 146749383 -50446049 - MLT1J1 LTR MaLR -329 115 8 3 1704 31 44 0 0 chr1 146749609 146749654 -50445778 + AT_rich Low_complexity Low_complexity 1 45 0 3 1704 1371 255 56 19 chr1 146749654 146750030 -50445402 + MTD LTR MaLR 6 395 -24 3 1704 1248 324 84 50 chr1 146750091 146750695 -50444737 - MLT1J1-int LTR MaLR -324 1063 439 3 1704 1248 219 99 72 chr1 146751540 146751914 -50443518 + ORR1C2 LTR MaLR 1 384 0 3 1704 292 425 4 4 chr1 146751977 146752206 -50443226 - L2 LINE L2 -975 2444 2216 3 1704 23 0 0 0 chr1 146752277 146752300 -50443132 + AT_rich Low_complexity Low_complexity 1 23 0 3 1704 771 329 48 52 chr1 146752304 146752573 -50442859 + B4 SINE B4 6 273 -19 3 1704 294 29 0 0 chr1 146752638 146752673 -50442759 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1704 561 15 0 0 chr1 146752673 146752738 -50442694 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1704 195 235 0 0 chr1 146753460 146753511 -50441921 + A-rich Low_complexity Low_complexity 2 52 0 3 1704 2125 131 22 22 chr1 146753830 146754198 -50441234 - RLTR9A LTR ERVK 0 368 1 3 1704 715 293 0 39 chr1 146754198 146754425 -50441007 - Lx8 LINE L1 -253 7220 7002 3 1704 504 0 0 0 chr1 146754434 146754490 -50440942 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 3 1704 1104 90 0 27 chr1 146754490 146754673 -50440759 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 1704 570 140 0 0 chr1 146754687 146754787 -50440645 - Lx2 LINE L1 -1 6996 6897 3 1704 337 346 67 16 chr1 146754792 146754986 -50440446 - Lx8 LINE L1 -492 6981 6778 3 1704 285 327 86 39 chr1 146755453 146755733 -50439699 - Charlie10 DNA MER1_type 0 2822 2530 3 1704 23 68 0 0 chr1 146756096 146756140 -50439292 + AT_rich Low_complexity Low_complexity 1 44 0 3 1704 986 292 144 28 chr1 146756159 146756595 -50438837 + Lx8 LINE L1 6224 6710 -763 3 1704 444 19 0 0 chr1 146756734 146756787 -50438645 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1704 418 91 117 0 chr1 146756892 146756969 -50438463 - L1_Mus4 LINE L1 -7 6629 6544 3 1704 1040 137 7 1 chr1 146756970 146757133 -50438299 + L1_Mus4 LINE L1 5982 6132 -504 3 1704 786 130 0 0 chr1 146757289 146757404 -50438028 - RMER19B LTR ERVK -3 899 785 3 1704 1163 144 0 5 chr1 146757404 146757606 -50437826 - L1_Mm LINE L1 -1889 3994 3794 3 1704 6786 154 19 16 chr1 146757607 146758818 -50436614 + Lx3_Mus LINE L1 4042 5256 -621 3 1704 473 145 0 0 chr1 146758824 146758900 -50436532 + Lx3_Mus LINE L1 5676 5751 -1258 3 1704 5229 124 1 18 chr1 146758892 146759707 -50435725 + L1_Mus4 LINE L1 5819 6619 -17 3 1704 985 185 233 47 chr1 146759708 146760081 -50435351 - RMER19B LTR ERVK -85 817 308 3 1704 1098 239 45 49 chr1 146760461 146760885 -50434547 - RMER19A LTR ERVK -261 641 1 3 1704 22 0 0 0 chr1 146762131 146762153 -50433279 + AT_rich Low_complexity Low_complexity 1 22 0 3 1704 276 247 59 0 chr1 146762640 146762725 -50432707 - L1MA7 LINE L1 -94 6197 6108 3 1704 544 303 76 38 chr1 146763107 146763474 -50431958 - L1MA7 LINE L1 -213 6078 5698 3 1704 46 19 0 0 chr1 146763622 146763675 -50431757 + AT_rich Low_complexity Low_complexity 1 53 0 3 1704 208 250 26 26 chr1 146763695 146763773 -50431659 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 3 1704 1418 175 131 26 chr1 146763784 146764079 -50431353 + RMER19C LTR ERVK 1 329 -282 3 1704 432 37 0 0 chr1 146764079 146764133 -50431299 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1704 1149 253 84 34 chr1 146764299 146764655 -50430777 - MTEb LTR MaLR -5 374 1 3 1704 594 305 105 40 chr1 146764655 146765006 -50430426 + MLT1D LTR MaLR 85 458 -47 3 1704 722 216 139 10 chr1 146765226 146765427 -50430005 + RMER19C LTR ERVK 296 522 -89 3 1704 1887 193 62 52 chr1 146765419 146765606 -50429826 + RMER6A LTR ERVK 144 320 -436 3 1704 701 12 12 0 chr1 146765606 146765692 -50429740 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1704 342 0 0 0 chr1 146765692 146765729 -50429703 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1704 189 0 0 0 chr1 146765735 146765756 -50429676 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1704 1887 193 62 52 chr1 146765756 146766075 -50429357 + RMER6A LTR ERVK 342 661 -95 3 1704 584 151 0 78 chr1 146766071 146766186 -50429246 + RMER19C LTR ERVK 496 601 -10 3 1704 1393 29 6 0 chr1 146766190 146766362 -50429070 - MTA_Mm LTR MaLR -220 176 4 4 1704 1250 139 87 62 chr1 146766362 146766530 -50428902 + MTA_Mm LTR MaLR 170 344 -52 4 1704 477 0 0 0 chr1 146766718 146766771 -50428661 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1704 608 50 30 0 chr1 146767177 146767278 -50428154 - L1Md_F3 LINE L1 0 6584 6481 4 1704 463 159 28 0 chr1 146770630 146770737 -50424695 + Lx9 LINE L1 7534 7643 -1 4 1704 940 75 0 57 chr1 146771220 146771361 -50424071 + B1_Mus1 SINE Alu 15 147 -1 4 1704 236 267 11 65 chr1 146771667 146771759 -50423673 - Charlie15a DNA MER1_type -22 202 116 4 1704 2691 22 14 159 chr1 146772179 146772606 -50422826 - RLTR10B2 LTR ERVK 0 365 1 4 1704 21 0 0 0 chr1 146772809 146772830 -50422602 + AT_rich Low_complexity Low_complexity 1 21 0 4 1704 6664 79 32 0 chr1 146774004 146774917 -50420515 - L1Md_F2 LINE L1 -306 5577 4636 4 1704 7647 67 2 4 chr1 146774918 146775901 -50419531 + L1Md_F2 LINE L1 5590 6570 -12 4 1704 201 121 0 0 chr1 146775918 146775951 -50419481 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1704 522 293 79 42 chr1 146776401 146776590 -50418842 - RMER30 DNA MER1_type -5 197 2 4 1704 3734 142 38 11 chr1 146777373 146778005 -50417427 - RLTR13D5 LTR ERVK 0 1023 375 4 1704 462 108 0 0 chr1 146778223 146778306 -50417126 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1704 243 0 0 0 chr1 146778306 146778333 -50417099 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1704 281 194 135 77 chr1 146779153 146779309 -50416123 + MER53 DNA hAT 1 165 -28 4 1704 24 0 0 0 chr1 146779503 146779527 -50415905 + AT_rich Low_complexity Low_complexity 1 24 0 4 1704 362 353 39 32 chr1 146780939 146781220 -50414212 + B4A SINE B4 2 284 -8 4 1704 534 54 0 0 chr1 146781260 146781334 -50414098 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1704 450 0 0 0 chr1 146781334 146781383 -50414049 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1704 1597 231 51 47 chr1 146782935 146783445 -50411987 + L1_Mur3 LINE L1 4482 4993 -887 4 1704 965 309 113 22 chr1 146783627 146784507 -50410925 - L1MA6 LINE L1 -303 5988 5022 4 1704 388 384 14 0 chr1 146784535 146784681 -50410751 + B3A SINE B2 9 156 -42 4 1704 1057 280 118 24 chr1 146784802 146785639 -50409793 - L1MA6 LINE L1 -1142 5001 4086 4 1704 1416 260 38 11 chr1 146786075 146786440 -50408992 - RLTR16 LTR ERVK -15 490 116 4 1704 3041 118 42 14 chr1 146786440 146786922 -50408510 + Lx3C LINE L1 6184 6678 -298 4 1704 656 125 0 123 chr1 146786931 146787086 -50408346 + Lx3C LINE L1 6838 6973 0 4 1704 269 232 128 31 chr1 146787756 146787915 -50407517 - L1M2 LINE L1 -845 5298 5117 4 1704 5453 242 51 28 chr1 146787933 146789243 -50406189 + Lx6 LINE L1 6111 7450 -10 4 1704 606 297 116 29 chr1 146789254 146789667 -50405765 + L1MA9 LINE L1 5864 6312 0 4 1704 208 389 12 48 chr1 146789722 146789887 -50405545 + MIRb SINE MIR 95 253 -15 4 1704 189 107 0 0 chr1 146789971 146789999 -50405433 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1704 959 117 7 0 chr1 146790549 146790686 -50404746 + B1_Mus1 SINE Alu 1 138 -10 4 1704 237 108 0 0 chr1 146792026 146792063 -50403369 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 4 1704 226 340 0 0 chr1 146792481 146792575 -50402857 + L1M2 LINE L1 5588 5681 -610 4 1704 252 318 33 116 chr1 146793094 146793215 -50402217 + LTR33C LTR ERVL 332 442 -187 4 1704 478 322 14 20 chr1 146793228 146793374 -50402058 - B1_Mur1 SINE Alu 0 149 5 4 1704 1297 325 86 30 chr1 146793561 146794268 -50401164 - Lx8 LINE L1 -63 7410 6664 4 1704 576 0 0 0 chr1 146794285 146794349 -50401083 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1704 11165 54 8 3 chr1 146794349 146796456 -50398976 - L1Md_F3 LINE L1 -17 6567 4449 4 1704 1124 176 10 5 chr1 146796461 146796655 -50398777 - Lx4B LINE L1 -258 6800 6606 4 1704 1143 289 56 0 chr1 146796653 146796975 -50398457 + Lx9 LINE L1 7041 7380 -264 4 1704 11586 68 18 0 chr1 146796980 146798525 -50396907 + L1Md_F2 LINE L1 4013 5585 -298 4 1704 7542 74 1 4 chr1 146798526 146799524 -50395908 + L1Md_F2 LINE L1 5587 6581 -1 4 1704 305 171 296 30 chr1 146799549 146799718 -50395714 + Lx9 LINE L1 7398 7611 -33 4 1705 1177 42 7 0 chr1 146801512 146801654 -50393778 + B1_Mus2 SINE Alu 5 147 0 4 1705 27 62 0 0 chr1 146802248 146802296 -50393136 + AT_rich Low_complexity Low_complexity 1 48 0 4 1705 319 381 53 21 chr1 146802768 146803052 -50392380 - L1M5 LINE L1 -566 5613 5321 4 1705 22 35 0 0 chr1 146803173 146803202 -50392230 + AT_rich Low_complexity Low_complexity 1 29 0 4 1705 12819 144 111 7 chr1 146804348 146807863 -50387569 - L1_Mus1 LINE L1 0 6567 2639 4 1705 627 122 51 0 chr1 146807863 146807961 -50387471 - U6 snRNA snRNA 0 107 5 4 1705 183 42 0 0 chr1 146808064 146808088 -50387344 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1705 1599 312 18 34 chr1 146808656 146809377 -50386055 - Lx5 LINE L1 -4 7046 6460 4 1705 300 274 59 0 chr1 146809430 146809532 -50385900 + Lx6 LINE L1 5978 6085 -1375 4 1705 374 257 48 16 chr1 146809647 146809766 -50385666 - B3A SINE B2 -77 121 3 4 1705 2804 250 67 90 chr1 146809778 146811108 -50384324 + L1_Rod LINE L1 520 1948 -3899 4 1705 630 26 0 0 chr1 146811108 146811184 -50384248 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 1705 2804 224 80 162 chr1 146811184 146811309 -50384123 + L1_Rod LINE L1 1949 2087 -3760 4 1705 468 86 0 0 chr1 146811309 146811379 -50384053 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1705 2804 224 80 162 chr1 146811379 146812101 -50383331 + L1_Rod LINE L1 2088 2596 -3251 4 1705 592 310 73 36 chr1 146812101 146812463 -50382969 + MTD LTR MaLR 22 419 0 4 1705 3408 182 27 24 chr1 146812584 146813250 -50382182 - Lx2B LINE L1 0 7000 6333 4 1705 637 133 0 62 chr1 146813247 146813359 -50382073 - Lx3A LINE L1 -270 6711 6607 4 1705 234 103 0 0 chr1 146813357 146813396 -50382036 + Lx3A LINE L1 6927 6965 -16 4 1705 966 116 0 0 chr1 146813396 146813543 -50381889 + (GAA)n Simple_repeat Simple_repeat 1 147 0 4 1705 25 0 0 0 chr1 146813543 146813568 -50381864 + AT_rich Low_complexity Low_complexity 1 25 0 4 1705 778 195 17 66 chr1 146813568 146813749 -50381683 - Lx2B LINE L1 -674 6326 6155 4 1705 439 200 36 0 chr1 146813748 146813858 -50381574 + Lx2 LINE L1 5984 6097 -900 4 1705 24 0 0 0 chr1 146813901 146813925 -50381507 + AT_rich Low_complexity Low_complexity 1 24 0 4 1705 498 290 32 13 chr1 146813952 146814109 -50381323 - B3 SINE B2 -29 187 28 4 1705 3557 263 47 33 chr1 146814125 146815123 -50380309 - RMER1B Other Other -11 1055 44 4 1705 1055 101 0 0 chr1 146815944 146816083 -50379349 + B1_Mus1 SINE Alu 1 139 -9 4 1705 297 15 59 44 chr1 146816083 146816151 -50379281 + (CAAA)n Simple_repeat Simple_repeat 2 70 0 4 1705 1677 98 0 75 chr1 146816303 146816569 -50378863 + L1_Mus2 LINE L1 6321 6566 0 4 1705 475 322 131 22 chr1 146816594 146817092 -50378340 - L1MC2 LINE L1 -474 5870 5319 4 1705 503 321 16 11 chr1 146817125 146817311 -50378121 + Lx8 LINE L1 6359 6545 -928 4 1705 279 355 36 18 chr1 146817473 146817694 -50377738 - L1MC2 LINE L1 -969 5177 4953 4 1705 435 361 65 47 chr1 146817769 146818280 -50377152 - L2 LINE L2 -687 2732 2213 4 1705 339 241 83 9 chr1 146818622 146818731 -50376701 + Lx2B LINE L1 6865 6981 -19 4 1705 21 0 0 0 chr1 146818737 146818758 -50376674 + AT_rich Low_complexity Low_complexity 1 21 0 4 1705 3533 96 2 9 chr1 146819478 146820004 -50375428 - L1_Mus1 LINE L1 -448 5435 4914 4 1705 6774 72 32 5 chr1 146820004 146821080 -50374352 + L1_Mus1 LINE L1 5448 6565 -2 4 1705 212 167 0 0 chr1 146821114 146821156 -50374276 + A-rich Low_complexity Low_complexity 5 46 0 4 1705 579 219 112 0 chr1 146821775 146821962 -50373470 - Lx9 LINE L1 -3 7641 7434 4 1705 662 154 7 20 chr1 146823903 146824055 -50371377 + (TA)n Simple_repeat Simple_repeat 1 150 0 4 1705 669 12 0 0 chr1 146824076 146824158 -50371274 - B1_Mm SINE Alu 0 147 66 4 1705 360 0 0 0 chr1 146824765 146824805 -50370627 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1705 1392 303 69 13 chr1 146825282 146825831 -50369601 - Lx8 LINE L1 -809 6664 6085 4 1705 189 154 0 0 chr1 146826400 146826439 -50368993 + T-rich Low_complexity Low_complexity 1 39 0 4 1705 2386 43 7 0 chr1 146826442 146826743 -50368689 - MTA_Mm LTR MaLR -54 342 40 4 1705 1862 207 90 3 chr1 146827452 146827839 -50367593 + MTC LTR MaLR 1 421 0 4 1705 23 78 0 0 chr1 146828032 146828083 -50367349 + AT_rich Low_complexity Low_complexity 1 51 0 4 1705 393 160 264 57 chr1 146828206 146828312 -50367120 + B1_Mus1 SINE Alu 1 128 -20 4 1705 23 0 0 0 chr1 146828669 146828692 -50366740 + AT_rich Low_complexity Low_complexity 1 23 0 4 1705 2273 215 34 32 chr1 146829516 146830384 -50365048 + Lx5 LINE L1 6195 7056 -2 4 1705 30 0 0 0 chr1 146831945 146831975 -50363457 + AT_rich Low_complexity Low_complexity 1 30 0 4 1705 227 178 29 22 chr1 146832149 146832287 -50363145 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 1705 243 61 0 0 chr1 146832314 146832347 -50363085 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1705 763 299 5 9 chr1 146832352 146832571 -50362861 - Lx9 LINE L1 -222 7422 7205 4 1705 2530 93 30 48 chr1 146832995 146833390 -50362042 - L1_Mus2 LINE L1 -1 6565 6178 4 1705 228 246 53 0 chr1 146834047 146834104 -50361328 - MTEa LTR MaLR -48 331 272 4 1705 7906 53 12 0 chr1 146834279 146835666 -50359766 - L1Md_F3 LINE L1 -2 6582 5179 4 1705 876 163 52 11 chr1 146835658 146835832 -50359600 - L1Md_A LINE L1 -6121 603 423 4 1705 285 297 13 13 chr1 146836345 146836420 -50359012 - PB1D10 SINE Alu -12 105 31 4 1705 264 186 0 0 chr1 146836649 146836708 -50358724 + GA-rich Low_complexity Low_complexity 6 64 0 4 1705 230 266 45 30 chr1 146836714 146836780 -50358652 + Lx8 LINE L1 6205 6271 -1202 4 1705 868 272 49 28 chr1 146836772 146837056 -50358376 - RMER1A Other Other -649 381 92 4 1705 1024 299 86 84 chr1 146837056 146837593 -50357839 + Lx8 LINE L1 6799 7347 -126 4 1705 522 289 104 35 chr1 146837593 146837794 -50357638 + B3 SINE B2 2 216 0 4 1705 1024 299 86 84 chr1 146837794 146837921 -50357511 + Lx8 LINE L1 7348 7464 -9 4 1705 22 0 0 0 chr1 146838380 146838402 -50357030 + AT_rich Low_complexity Low_complexity 1 22 0 4 1705 39 0 0 0 chr1 146838528 146838567 -50356865 + AT_rich Low_complexity Low_complexity 1 39 0 5 1705 510 17 0 0 chr1 146838708 146838767 -50356665 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 1705 1108 65 0 0 chr1 146838767 146838906 -50356526 - B1_Mus1 SINE Alu -8 140 2 5 1705 572 101 0 11 chr1 146838968 146839058 -50356374 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 5 1705 282 116 0 0 chr1 146839894 146839937 -50355495 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 5 1705 269 246 0 0 chr1 146840156 146840225 -50355207 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1705 1570 178 25 65 chr1 146840237 146840561 -50354871 - ORR1A4 LTR MaLR -18 311 1 5 1705 492 179 0 0 chr1 146840577 146840689 -50354743 + (TG)n Simple_repeat Simple_repeat 1 112 0 5 1705 565 321 83 63 chr1 146840806 146841467 -50353965 - L1MC LINE L1 -2131 4015 3342 5 1705 307 213 153 21 chr1 146841522 146841722 -50353710 - L1M5 LINE L1 -2873 3273 3038 5 1705 2820 200 51 15 chr1 146842618 146843284 -50352148 - RMER6C LTR ERVK 0 690 1 5 1705 267 281 49 0 chr1 146843387 146843469 -50351963 + MER63B DNA AcHobo 340 425 -11 5 1705 23 0 0 0 chr1 146843643 146843666 -50351766 + AT_rich Low_complexity Low_complexity 1 23 0 5 1705 688 246 69 28 chr1 146843690 146843907 -50351525 + ORR1D1 LTR MaLR 1 226 -148 5 1705 7042 114 19 6 chr1 146844038 146844162 -50351270 - Lx LINE L1 -1 6653 6519 5 1705 189 0 0 0 chr1 146844162 146844183 -50351249 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 5 1705 7042 115 19 6 chr1 146844183 146845133 -50350299 - Lx LINE L1 -136 6518 5568 5 1705 843 39 0 0 chr1 146845133 146845236 -50350196 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 5 1705 2293 170 14 10 chr1 146845236 146845332 -50350100 - Lx LINE L1 -316 5567 5467 5 1705 4683 267 45 22 chr1 146845369 146846710 -50348722 + ORR1D1-int LTR MaLR 13 1370 0 5 1705 1137 233 144 21 chr1 146846710 146847043 -50348389 + ORR1D1 LTR MaLR 1 374 0 5 1705 22 0 0 0 chr1 146847279 146847301 -50348131 + AT_rich Low_complexity Low_complexity 1 22 0 5 1705 1395 139 25 17 chr1 146847567 146847802 -50347630 - RLTR14 LTR ERV1 -52 330 94 5 1705 297 0 0 0 chr1 146847803 146847836 -50347596 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1705 376 174 58 0 chr1 146847836 146847922 -50347510 - RLTR14 LTR ERV1 -274 108 18 5 1705 348 302 82 16 chr1 146847922 146848104 -50347328 - L1M2 LINE L1 -1174 4969 4776 5 1705 456 171 13 0 chr1 146848338 146848414 -50347018 + MT2A LTR ERVL 1 77 -456 5 1705 576 0 0 0 chr1 146848421 146848485 -50346947 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 5 1705 883 63 16 0 chr1 146848485 146848611 -50346821 + (TTC)n Simple_repeat Simple_repeat 2 130 0 5 1705 235 312 29 97 chr1 146848611 146848629 -50346803 + MTE2b LTR MaLR 83 95 -284 5 1705 7957 44 1 3 chr1 146848631 146849900 -50345532 - L1Md_F2 LINE L1 -28 6554 5289 5 1705 351 227 0 0 chr1 146851043 146851118 -50344314 + Lx8 LINE L1 6790 6864 -609 5 1705 27 49 0 0 chr1 146851977 146852018 -50343414 + AT_rich Low_complexity Low_complexity 1 41 0 5 1705 21 0 0 0 chr1 146852186 146852207 -50343225 + AT_rich Low_complexity Low_complexity 1 21 0 5 1705 883 103 21 0 chr1 146852353 146852498 -50342934 + (GGAA)n Simple_repeat Simple_repeat 3 150 0 5 1705 294 29 0 0 chr1 146852796 146852831 -50342601 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 5 1705 210 276 91 13 chr1 146852869 146852946 -50342486 - RSINE1 SINE B4 0 165 83 5 1705 216 241 106 0 chr1 146853720 146853861 -50341571 + (CATAC)n Simple_repeat Simple_repeat 1 156 0 5 1705 617 267 37 6 chr1 146855101 146855263 -50340169 + Lx8 LINE L1 6351 6517 -956 5 1705 524 324 119 47 chr1 146855259 146855619 -50339813 + Lx8 LINE L1 6737 7122 -351 5 1705 4808 61 19 8 chr1 146855787 146856418 -50339014 + L1Md_F2 LINE L1 5935 6572 -10 5 1705 28 29 0 0 chr1 146856433 146856468 -50338964 + AT_rich Low_complexity Low_complexity 1 35 0 5 1705 1889 235 100 19 chr1 146856855 146856964 -50338468 + Lx6 LINE L1 6044 6166 -1294 5 1705 312 120 0 0 chr1 146856964 146857014 -50338418 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1705 1889 235 100 19 chr1 146857014 146857424 -50338008 + Lx6 LINE L1 6167 6605 -855 5 1705 1404 229 60 17 chr1 146857470 146857817 -50337615 + RMER20B LTR ERVK 17 378 -249 5 1705 308 273 63 101 chr1 146857863 146858022 -50337410 - RLTR23 LTR ERV1 0 430 278 5 1705 1442 252 20 15 chr1 146858012 146858348 -50337084 + RLTR22_Mur LTR ERVK 410 745 -1103 5 1705 396 170 10 39 chr1 146858348 146858452 -50336980 - Lx LINE L1 -5 6649 6549 5 1705 1442 252 20 15 chr1 146858452 146858513 -50336919 + RLTR22_Mur LTR ERVK 746 808 -1040 5 1705 432 230 76 50 chr1 146858509 146858628 -50336804 + RMER20B LTR ERVK 506 627 0 5 1705 1344 231 97 58 chr1 146858642 146858762 -50336670 + Lx7 LINE L1 6721 6831 -865 5 1705 5398 50 1 0 chr1 146858762 146859436 -50335996 + L1_Mus1 LINE L1 5893 6567 0 5 1705 1344 231 97 58 chr1 146859436 146859696 -50335736 + Lx7 LINE L1 6832 7116 -580 5 1705 2666 178 14 8 chr1 146859696 146860178 -50335254 + RLTR12B LTR ERVK 1 485 -43 5 1705 994 68 7 40 chr1 146860182 146860319 -50335113 + B1_Mus1 SINE Alu 2 137 -11 5 1705 188 86 0 28 chr1 146860319 146860355 -50335077 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1705 994 68 7 40 chr1 146860355 146860369 -50335063 + B1_Mus1 SINE Alu 138 148 0 5 1705 719 122 36 7 chr1 146860475 146860615 -50334817 - L1_Mus4 LINE L1 -5 6631 6488 5 1705 293 149 0 0 chr1 146860615 146860662 -50334770 - L1_Mus4 LINE L1 -225 6413 6367 5 1705 225 328 35 0 chr1 146860699 146860815 -50334617 + Lx6 LINE L1 7165 7284 -176 5 1705 341 226 52 41 chr1 146860894 146860991 -50334441 + Lx7 LINE L1 7199 7296 -400 5 1705 324 0 0 0 chr1 146861234 146861270 -50334162 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 5 1705 3161 51 177 2 chr1 146863397 146863831 -50331601 + RLTR1B LTR ERV1 3 512 0 5 1705 1447 249 46 13 chr1 146864004 146864394 -50331038 - Lx9 LINE L1 -146 7498 7096 5 1705 256 33 0 0 chr1 146864391 146864421 -50331011 + L1_Mus1 LINE L1 6417 6446 -121 5 1705 2348 183 19 21 chr1 146864417 146865322 -50330110 - L1VL4 LINE L1 -2263 1352 445 5 1705 681 357 69 14 chr1 146867678 146868039 -50327393 + Lx9 LINE L1 7061 7441 -203 5 1705 1417 283 41 61 chr1 146868082 146868639 -50326793 - MER67C LTR ERV1 -14 697 152 5 1705 1496 307 79 13 chr1 146869048 146869684 -50325748 + Lx8 LINE L1 6637 7314 -159 5 1705 555 277 66 0 chr1 146869712 146869849 -50325583 - B1_Mus2 SINE Alu 0 147 2 5 1705 657 304 5 24 chr1 146869941 146870150 -50325282 + B3 SINE B2 1 205 -11 5 1705 582 54 0 0 chr1 146871248 146871322 -50324110 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1705 748 289 70 8 chr1 146871444 146871688 -50323744 - MER68 LTR ERVL -251 312 54 5 1705 678 272 59 21 chr1 146872290 146872583 -50322849 - MT2A LTR ERVL 0 584 266 5 1705 466 210 29 114 chr1 146872589 146872729 -50322703 - MT2A LTR ERVL -400 133 6 5 1705 244 295 0 37 chr1 146872757 146872838 -50322594 - ORR1A3-int LTR MaLR -1302 661 584 5 1705 6075 105 18 0 chr1 146872842 146873887 -50321545 - L1_Mus4 LINE L1 -179 6457 5396 5 1705 1289 220 40 60 chr1 146873882 146874332 -50321100 - L1_Mur3 LINE L1 -2684 3196 2756 5 1705 554 191 8 0 chr1 146874524 146874655 -50320777 + (TA)n Simple_repeat Simple_repeat 2 133 0 5 1705 776 311 99 48 chr1 146874804 146875138 -50320294 + ORR1D2 LTR MaLR 3 353 -17 5 1705 299 290 53 8 chr1 146877980 146878112 -50317320 - Lx7 LINE L1 0 7696 7559 5 1705 7292 190 23 25 chr1 146878124 146880673 -50314759 + Lx3C LINE L1 4448 6974 -2 5 1705 21 71 0 0 chr1 146880676 146880718 -50314714 + AT_rich Low_complexity Low_complexity 1 42 0 5 1705 543 198 101 105 chr1 146880796 146881005 -50314427 + Lx7 LINE L1 6998 7205 -491 5 1705 314 294 74 4 chr1 146881001 146881236 -50314196 - L1MA8 LINE L1 -187 6113 5857 5 1705 21 0 0 0 chr1 146881525 146881546 -50313886 + AT_rich Low_complexity Low_complexity 1 21 0 5 1705 4046 157 14 13 chr1 146881794 146882484 -50312948 + RLTR17 LTR ERVK 1 691 -1 5 1705 32 26 0 0 chr1 146882558 146882597 -50312835 + AT_rich Low_complexity Low_complexity 1 39 0 5 1705 1648 126 104 0 chr1 146883842 146884120 -50311312 + L1_Mus3 LINE L1 6332 6638 0 5 1705 299 283 40 32 chr1 146884125 146884249 -50311183 - Lx8 LINE L1 -636 6837 6713 5 1705 545 299 7 42 chr1 146884284 146884427 -50311005 + B1_Mur3 SINE Alu 5 142 -7 5 1705 213 180 0 0 chr1 146884519 146884569 -50310863 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1705 526 119 129 0 chr1 146884574 146884675 -50310757 + Lx9 LINE L1 7503 7616 -28 5 1705 496 302 40 73 chr1 146885695 146885755 -50309677 - Lx9 LINE L1 -699 6945 6894 5 1705 3652 88 0 6 chr1 146885755 146886281 -50309151 + L1_Mus1 LINE L1 6057 6567 0 5 1705 3652 88 0 6 chr1 146886281 146886294 -50309138 + L1_Mus1 LINE L1 6543 6554 -13 5 1705 496 302 40 73 chr1 146886294 146886508 -50308924 - Lx9 LINE L1 -751 6893 6680 5 1705 309 149 0 0 chr1 146886525 146886572 -50308860 - Lx LINE L1 -415 6239 6193 5 1705 2000 141 120 21 chr1 146886566 146886835 -50308597 + Lx LINE L1 6234 6517 -137 5 1705 243 0 0 0 chr1 146886835 146886862 -50308570 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 5 1705 2000 141 120 21 chr1 146886862 146886975 -50308457 + Lx LINE L1 6518 6653 -1 5 1705 22 0 0 0 chr1 146886975 146886997 -50308435 + AT_rich Low_complexity Low_complexity 1 22 0 5 1705 563 254 0 31 chr1 146887037 146887167 -50308265 - B1_Mur3 SINE Alu -20 129 4 5 1705 462 350 54 16 chr1 146887169 146887355 -50308077 - Lx9 LINE L1 -991 6653 6461 5 1705 297 323 0 0 chr1 146887476 146887575 -50307857 + CT-rich Low_complexity Low_complexity 1 99 0 5 1705 186 377 9 19 chr1 146888259 146888367 -50307065 - MIRb SINE MIR -44 224 118 5 1705 1187 329 27 49 chr1 146888954 146889650 -50305782 - Lx9 LINE L1 -1 7643 6963 5 1705 310 198 27 0 chr1 146891167 146891278 -50304154 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 5 1705 1298 232 48 40 chr1 146893053 146893244 -50302188 + ORR1C2 LTR MaLR 2 193 -191 5 1705 556 72 0 40 chr1 146893244 146893345 -50302087 + (TCTCTG)n Simple_repeat Simple_repeat 4 100 0 5 1705 1298 232 48 40 chr1 146893345 146893530 -50301902 + ORR1C2 LTR MaLR 194 380 -4 5 1705 2860 219 97 18 chr1 146893533 146894826 -50300606 + ORR1C2-int LTR MaLR 1 1904 -59 5 1705 464 219 8 0 chr1 146894826 146894954 -50300478 + CT-rich Low_complexity Low_complexity 2 130 0 5 1705 718 188 33 20 chr1 146894954 146895113 -50300319 + ORR1C2 LTR MaLR 230 384 0 5 1705 1140 68 0 7 chr1 146896539 146896687 -50298745 + L1Md_F2 LINE L1 5440 5586 -297 5 1705 8088 45 3 0 chr1 146896687 146897680 -50297752 + L1Md_F2 LINE L1 5587 6582 0 5 1705 490 315 132 12 chr1 146897710 146898035 -50297397 + MER97c DNA MER1_type? 48 411 -679 5 1705 645 314 63 47 chr1 146899055 146899419 -50296013 + ORR1D2 LTR MaLR 1 370 0 5 1705 282 264 37 9 chr1 146899438 146899545 -50295887 - MER2 DNA MER2_type -140 205 96 5 1705 23 33 0 0 chr1 146899625 146899655 -50295777 + AT_rich Low_complexity Low_complexity 1 30 0 5 1705 196 348 0 0 chr1 146899810 146899879 -50295553 + L2 LINE L2 2002 2070 -1349 5 1705 348 64 0 0 chr1 146900390 146900437 -50294995 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1705 535 399 20 54 chr1 146900477 146900774 -50294658 - B4A SINE B4 -4 288 2 6 1705 301 331 74 37 chr1 146900803 146900938 -50294494 + L2 LINE L2 2730 2869 -550 5 1705 220 374 79 0 chr1 146901543 146901682 -50293750 + MER5A DNA MER1_type 39 188 -1 6 1705 360 64 0 0 chr1 146902954 146903001 -50292431 + (TGG)n Simple_repeat Simple_repeat 1 47 0 6 1705 306 50 0 0 chr1 146903001 146903041 -50292391 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1705 275 192 9 88 chr1 146903706 146903820 -50291612 - Lx6 LINE L1 -26 7434 7330 6 1705 2247 258 61 27 chr1 146903811 146904503 -50290929 - Lx5 LINE L1 -738 6722 5783 6 1705 4243 191 73 11 chr1 146904502 146905508 -50289924 - Lx5 LINE L1 -257 5623 4556 6 1705 30 0 0 0 chr1 146905510 146905540 -50289892 + AT_rich Low_complexity Low_complexity 1 30 0 6 1705 1246 264 16 16 chr1 146905761 146906149 -50289283 - L1_Mur3 LINE L1 -547 5333 4946 6 1705 2456 62 3 29 chr1 146906228 146906575 -50288857 - L1Md_F2 LINE L1 0 6582 6245 6 1705 232 37 0 0 chr1 146906575 146906602 -50288830 + L1Md_F2 LINE L1 6351 6377 -205 6 1705 971 43 0 0 chr1 146906594 146906709 -50288723 + L1_Mus2 LINE L1 6131 6245 -321 6 1705 181 0 33 33 chr1 146906710 146906740 -50288692 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 6 1705 2368 63 3 19 chr1 146906886 146906942 -50288490 + L1_Mus2 LINE L1 6250 6305 -261 6 1705 2894 95 89 21 chr1 146906942 146907413 -50288019 + RLTR1C LTR ERV1 1 503 0 6 1705 2368 63 3 19 chr1 146907413 146907677 -50287755 + L1_Mus2 LINE L1 6306 6565 -1 6 1705 1336 128 20 20 chr1 146907790 146908037 -50287395 - Lx LINE L1 -13 6641 6395 6 1705 3903 158 13 7 chr1 146908087 146908771 -50286661 + Lx2 LINE L1 6310 6997 0 6 1705 403 346 119 19 chr1 146908828 146908987 -50286445 + B4A SINE B4 118 292 0 6 1705 24 53 0 0 chr1 146909096 146909134 -50286298 + AT_rich Low_complexity Low_complexity 1 38 0 6 1705 351 0 0 0 chr1 146909167 146909206 -50286226 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1705 233 267 50 0 chr1 146909854 146909914 -50285518 + B1F SINE Alu 71 133 -16 6 1705 206 220 0 17 chr1 146909941 146910001 -50285431 + GA-rich Low_complexity Low_complexity 3 61 0 6 1705 203 237 0 0 chr1 146910040 146910078 -50285354 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 6 1705 198 148 31 47 chr1 146912320 146912384 -50283048 + GA-rich Low_complexity Low_complexity 1 63 0 6 1705 4808 127 23 58 chr1 146914285 146915122 -50280310 - Lx2A1 LINE L1 0 7008 6202 6 1705 530 64 26 0 chr1 146915182 146915260 -50280172 + (TTTTC)n Simple_repeat Simple_repeat 4 83 0 6 1705 7983 43 20 0 chr1 146915270 146916319 -50279113 - L1Md_F3 LINE L1 -2 6582 5513 6 1705 923 130 0 27 chr1 146916497 146916647 -50278785 + B1_Mus1 SINE Alu 2 147 -1 6 1705 285 265 175 45 chr1 146916651 146916805 -50278627 + B3 SINE B2 16 189 -27 6 1705 260 358 32 48 chr1 146918330 146918456 -50276976 - RSINE1 SINE B4 -29 136 13 6 1705 1566 123 9 0 chr1 146918562 146918789 -50276643 + Lx2 LINE L1 6477 6705 -292 6 1705 888 70 0 0 chr1 146919094 146919223 -50276209 + (TTCTG)n Simple_repeat Simple_repeat 2 130 0 6 1705 364 208 30 15 chr1 146919233 146919365 -50276067 + CT-rich Low_complexity Low_complexity 3 136 0 6 1705 247 25 50 0 chr1 146919809 146919849 -50275583 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1705 289 365 108 27 chr1 146919885 146920144 -50275288 - B4A SINE B4 -10 282 3 6 1705 360 0 0 0 chr1 146922209 146922249 -50273183 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 1705 1091 132 0 0 chr1 146922249 146922408 -50273024 - B2_Mm2 SINE B2 -34 161 3 6 1705 472 130 22 0 chr1 146922709 146922801 -50272631 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 1705 312 331 24 77 chr1 146922801 146922971 -50272461 - RSINE1 SINE B4 0 165 5 6 1705 465 19 0 0 chr1 146923226 146923280 -50272152 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1705 814 287 69 11 chr1 146923611 146923872 -50271560 + B4A SINE B4 3 278 -14 6 1705 354 345 148 19 chr1 146924130 146924387 -50271045 + L1MEf LINE L1 1059 1348 -4852 6 1705 932 70 8 0 chr1 146924445 146924574 -50270858 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 6 1705 254 185 148 0 chr1 146925150 146925204 -50270228 + RSINE1 SINE B4 7 68 -97 6 1705 3349 72 35 63 chr1 146925352 146925859 -50269573 - MT2_Mm LTR ERVL 0 493 1 6 1705 23 33 0 0 chr1 146925992 146926022 -50269410 + AT_rich Low_complexity Low_complexity 1 30 0 6 1705 31719 94 27 6 chr1 146926417 146931464 -50263968 + L1Md_A LINE L1 411 5586 -297 6 213 7622 72 3 0 chr1 146931464 146932455 -50262977 + L1Md_F2 LINE L1 5588 6581 -1 6 1706 31719 83 3 2 chr1 146932455 146932480 -50262952 + L1Md_A LINE L1 5587 5610 -273 6 1706 1165 213 91 34 chr1 146932755 146933091 -50262341 - RMER16 LTR ERVK -3 530 1 6 1706 368 291 36 33 chr1 146933333 146933434 -50261998 + B3 SINE B2 4 106 -92 6 1706 1838 93 30 4 chr1 146933500 146933770 -50261662 - L1_Mus3 LINE L1 -10 6628 6352 6 1706 13694 164 25 61 chr1 146933772 146936028 -50259404 + L1_Mus3 LINE L1 3110 5226 -651 6 1706 486 0 0 0 chr1 146936028 146936082 -50259350 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1706 13694 113 15 19 chr1 146936082 146937127 -50258305 + L1_Mus3 LINE L1 5227 6320 -318 6 1706 2737 94 37 2 chr1 146937885 146938292 -50257140 + BGLII LTR ERVK 1 421 0 6 1706 25 0 0 0 chr1 146938303 146938328 -50257104 + AT_rich Low_complexity Low_complexity 1 25 0 6 1706 632 13 13 0 chr1 146938436 146938513 -50256919 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1706 1846 70 0 12 chr1 146938665 146938911 -50256521 - L1_Mus2 LINE L1 0 6566 6324 6 1706 1604 303 75 24 chr1 146938945 146939648 -50255784 - Lx9 LINE L1 -387 7257 6519 6 1706 410 326 92 8 chr1 146939959 146940089 -50255343 + RSINE1 SINE B4 3 143 -22 6 1706 30 27 0 0 chr1 146940117 146940154 -50255278 + AT_rich Low_complexity Low_complexity 1 37 0 6 1706 25 31 0 0 chr1 146941820 146941852 -50253580 + AT_rich Low_complexity Low_complexity 1 32 0 6 1706 21 36 0 0 chr1 146942377 146942405 -50253027 + AT_rich Low_complexity Low_complexity 1 28 0 6 1706 514 130 0 65 chr1 146943567 146943674 -50251758 + L1_Mur2 LINE L1 4362 4461 -1416 6 1706 291 128 0 0 chr1 146943700 146943747 -50251685 + L1_Mur1 LINE L1 2103 2149 -3737 6 1706 2316 258 60 13 chr1 146943748 146944346 -50251086 + Lx2B LINE L1 6355 6980 -20 6 1706 456 19 0 0 chr1 146944477 146944530 -50250902 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1706 2414 239 121 38 chr1 146944764 146944855 -50250577 + Lx9 LINE L1 6687 6767 -877 6 1706 204 67 0 0 chr1 146944855 146944885 -50250547 + (CAA)n Simple_repeat Simple_repeat 1 30 0 6 1706 2414 239 121 38 chr1 146944885 146945013 -50250419 + Lx9 LINE L1 6768 6907 -737 6 1706 228 35 0 0 chr1 146945013 146945042 -50250390 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 6 1706 2414 239 121 38 chr1 146945042 146945143 -50250289 + Lx9 LINE L1 6908 7024 -620 6 1706 233 29 29 0 chr1 146945143 146945177 -50250255 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1706 2414 239 121 38 chr1 146945177 146945649 -50249783 + Lx9 LINE L1 7025 7546 -98 6 1706 778 317 136 11 chr1 146945787 146946154 -50249278 + MTE-int LTR MaLR 248 660 -920 6 1706 24 0 0 0 chr1 146946154 146946178 -50249254 + AT_rich Low_complexity Low_complexity 1 24 0 6 1706 821 257 16 5 chr1 146946191 146946379 -50249053 - RMER1C Other Other -360 982 793 6 1706 1595 164 100 25 chr1 146946382 146946701 -50248731 + RMER1C Other Other 998 1340 -2 6 1706 251 304 159 44 chr1 146946770 146947021 -50248411 + Tigger1 DNA MER2_type 174 453 -1965 6 1706 1127 68 0 0 chr1 146947206 146947352 -50248080 + B1_Mus1 SINE Alu 2 147 -1 6 1706 1620 60 0 0 chr1 146947352 146947656 -50247776 + (GA)n Simple_repeat Simple_repeat 1 304 0 6 1706 306 301 130 0 chr1 146948057 146948180 -50247252 + Tigger1 DNA MER2_type 2257 2395 -23 6 1706 28148 20 0 0 chr1 146948181 146952211 -50243221 - L1Md_T LINE L1 0 6582 2553 6 1706 22 56 0 0 chr1 146953573 146953609 -50241823 + AT_rich Low_complexity Low_complexity 1 36 0 6 1706 5782 99 16 1 chr1 146953611 146954431 -50241001 - Lx3_Mus LINE L1 -22 6987 6156 6 1706 478 318 100 41 chr1 146954887 146955234 -50240198 - MTD LTR MaLR -25 354 1 6 1706 243 203 0 42 chr1 146955908 146955980 -50239452 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1706 431 328 132 78 chr1 146956042 146956247 -50239185 - B4A SINE B4 -56 236 21 6 1706 828 145 0 0 chr1 146956574 146956698 -50238734 - RMER6C LTR ERVK 0 690 567 6 1706 982 93 49 77 chr1 146956704 146956990 -50238442 + RLTR1B LTR ERV1 3 280 -3019 6 1706 962 170 104 30 chr1 146956958 146957189 -50238243 + MMERGLN-int LTR ERV1 128 375 -7181 6 1706 13094 65 55 15 chr1 146957161 146958024 -50237408 + RLTR1B-int LTR ERV1 264 1138 -2161 6 1706 942 9 0 0 chr1 146958024 146958131 -50237301 + (GA)n Simple_repeat Simple_repeat 1 107 0 6 1706 13094 99 56 27 chr1 146958131 146959238 -50236194 + RLTR1B-int LTR ERV1 1139 2109 -1190 6 1706 3304 31 0 0 chr1 146959262 146959645 -50235787 + RLTR1B-int LTR ERV1 2917 3299 0 6 1706 3368 78 72 22 chr1 146959645 146959939 -50235493 + RLTR1B LTR ERV1 1 319 -193 6 1706 201 39 0 0 chr1 146959939 146959965 -50235467 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 6 1706 3368 78 72 22 chr1 146959965 146960158 -50235274 + RLTR1B LTR ERV1 320 511 -1 6 1706 1266 204 150 104 chr1 146960160 146960664 -50234768 - RMER6C LTR ERVK -125 565 1 6 1706 1050 205 0 51 chr1 146961598 146961814 -50233618 - RMER10B LTR ERVL 0 398 194 6 1706 1167 201 46 14 chr1 146961822 146962105 -50233327 - RMER10B LTR ERVL -106 292 1 6 1706 7241 159 19 22 chr1 146962308 146963356 -50232076 - Lx3B LINE L1 -22 6951 5904 6 1706 270 0 0 0 chr1 146963356 146963386 -50232046 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 1706 7241 159 19 22 chr1 146963386 146963632 -50231800 - Lx3B LINE L1 -1070 5903 5662 6 1706 2960 142 82 9 chr1 146963624 146964186 -50231246 + Lx4A LINE L1 2238 2840 -3037 6 1706 12681 145 48 14 chr1 146964185 146967013 -50228419 + Lx4A LINE L1 3492 6440 -618 6 1706 1679 204 87 11 chr1 146967013 146967369 -50228063 + Lx4A LINE L1 6676 7058 0 6 1706 26 0 0 0 chr1 146967369 146967395 -50228037 + AT_rich Low_complexity Low_complexity 1 26 0 6 1706 3069 57 24 27 chr1 146967407 146967819 -50227613 + IAPLTR2a LTR ERVK 1 411 0 6 1706 185 65 32 0 chr1 146967864 146967895 -50227537 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6 1706 1097 119 0 11 chr1 146967946 146968125 -50227307 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 6 1706 462 79 0 0 chr1 146968127 146968190 -50227242 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1706 456 19 0 0 chr1 146968190 146968243 -50227189 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 6 1706 216 255 0 0 chr1 146968306 146968357 -50227075 + GA-rich Low_complexity Low_complexity 2 52 0 6 1706 634 263 9 55 chr1 146968358 146968575 -50226857 - Lx7 LINE L1 -279 7417 7211 6 1706 1263 220 46 9 chr1 146968643 146968969 -50226463 - Lx7 LINE L1 -500 7196 6859 6 1706 1096 89 0 0 chr1 146969544 146969690 -50225742 + B1_Mm SINE Alu 2 147 0 7 1706 256 323 20 20 chr1 146969936 146970037 -50225395 + MTEa LTR MaLR 259 359 -20 7 1706 1274 299 104 19 chr1 146970055 146970586 -50224846 + MTEa-int LTR MaLR 7 582 -998 7 1706 489 370 30 40 chr1 146970643 146970944 -50224488 + MTEa-int LTR MaLR 673 970 -610 7 1706 797 193 0 124 chr1 146971336 146971537 -50223895 + ORR1D1 LTR MaLR 6 181 -193 7 1706 246 62 0 0 chr1 146971537 146971569 -50223863 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1706 772 275 9 37 chr1 146971571 146971786 -50223646 + ORR1D1 LTR MaLR 174 382 -2 7 1706 494 352 0 53 chr1 146971800 146971971 -50223461 + RSINE1 SINE B4 2 163 -2 7 1706 183 186 0 0 chr1 146971973 146972016 -50223416 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1706 244 303 0 0 chr1 146972016 146972082 -50223350 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 7 1706 718 241 79 35 chr1 146972988 146973190 -50222242 - B3 SINE B2 0 216 6 7 1706 360 0 0 0 chr1 146974131 146974171 -50221261 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1706 354 123 0 0 chr1 146974206 146974263 -50221169 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1706 229 319 0 0 chr1 146974302 146974371 -50221061 - Lx8 LINE L1 -235 7238 7170 7 1706 198 0 0 0 chr1 146974501 146974523 -50220909 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1706 1272 158 141 8 chr1 146974523 146974772 -50220660 - Lx3C LINE L1 0 6976 6695 7 1706 292 283 89 32 chr1 146974998 146975122 -50220310 - L2 LINE L2 -996 2423 2293 7 1706 21 71 0 0 chr1 146975248 146975290 -50220142 + AT_rich Low_complexity Low_complexity 1 42 0 7 1706 864 281 242 88 chr1 146975290 146975921 -50219511 - Lx8 LINE L1 -151 7322 6595 7 1706 1628 59 0 5 chr1 146976076 146976281 -50219151 - Lx LINE L1 -327 6327 6124 7 1706 1698 144 27 3 chr1 146976281 146976573 -50218859 + Lx LINE L1 6350 6648 -6 7 1706 234 0 0 0 chr1 146976691 146976717 -50218715 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1706 28 29 0 0 chr1 146977081 146977116 -50218316 + AT_rich Low_complexity Low_complexity 1 35 0 7 1706 22 0 0 0 chr1 146978098 146978120 -50217312 + AT_rich Low_complexity Low_complexity 1 22 0 7 1706 358 133 0 39 chr1 146978557 146978635 -50216797 + CT-rich Low_complexity Low_complexity 3 77 0 7 1706 588 337 134 31 chr1 146978936 146979440 -50215992 + MLT1E LTR MaLR 40 601 -52 7 1706 385 346 69 44 chr1 146979883 146980200 -50215232 + MLT1A LTR MaLR 37 361 -13 7 1706 21 0 0 0 chr1 146980949 146980970 -50214462 + AT_rich Low_complexity Low_complexity 1 21 0 7 1706 22 0 0 0 chr1 146981053 146981075 -50214357 + AT_rich Low_complexity Low_complexity 1 22 0 7 1706 457 321 24 84 chr1 146981705 146982075 -50213357 + L1_Mur3 LINE L1 4979 5322 -558 7 1706 579 127 83 17 chr1 146982075 146982195 -50213237 + Lx LINE L1 6527 6654 0 7 1706 457 321 24 84 chr1 146982195 146982287 -50213145 + L1_Mur3 LINE L1 5323 5413 -467 7 1706 242 250 0 38 chr1 146982534 146982613 -50212819 - Lx3C LINE L1 -2 6974 6899 7 1706 902 153 6 0 chr1 146982650 146982813 -50212619 + GA-rich Low_complexity Low_complexity 2 165 0 7 1706 255 358 20 65 chr1 146982820 146983220 -50212212 + L1_Mur3 LINE L1 5446 5827 -53 7 1706 620 306 107 26 chr1 146983357 146983629 -50211803 + Lx8 LINE L1 7169 7462 -11 7 1706 390 326 70 35 chr1 146984279 146984503 -50210929 + MLT1A1 LTR MaLR 176 364 -1 7 1706 468 122 12 24 chr1 146985657 146985741 -50209691 + ORR1B2 LTR MaLR 1 83 -284 7 1706 214 329 190 0 chr1 146985774 146985853 -50209579 + PB1D10 SINE Alu 17 110 -7 7 1706 614 148 9 0 chr1 146986743 146986858 -50208574 + CT-rich Low_complexity Low_complexity 2 117 0 7 1706 189 0 0 0 chr1 146986858 146986879 -50208553 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1706 246 105 0 0 chr1 146988549 146988587 -50206845 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1706 337 408 37 70 chr1 146988637 146988935 -50206497 - B4 SINE B4 -3 289 2 7 1706 21 0 0 0 chr1 146989232 146989253 -50206179 + AT_rich Low_complexity Low_complexity 1 21 0 7 1706 311 309 113 42 chr1 146989720 146990004 -50205428 - Lx9 LINE L1 -35 7609 7306 7 1706 201 158 0 0 chr1 146990708 146990746 -50204686 + T-rich Low_complexity Low_complexity 6 43 0 7 1706 270 218 112 22 chr1 146990746 146990835 -50204597 - MTE2a LTR MaLR 0 379 283 7 1706 416 307 66 22 chr1 146991226 146991409 -50204023 - MER76 LTR ERVL -471 220 30 7 1706 453 335 68 109 chr1 146991418 146991830 -50203602 + MLT2B1 LTR ERVL 16 410 -4 7 1706 446 146 12 0 chr1 146992527 146992609 -50202823 + (TA)n Simple_repeat Simple_repeat 2 84 0 7 1706 498 381 39 21 chr1 146992629 146992908 -50202524 - B4A SINE B4 -3 289 6 7 1706 21 36 0 0 chr1 146993257 146993285 -50202147 + AT_rich Low_complexity Low_complexity 1 28 0 7 1706 247 329 13 0 chr1 146995183 146995259 -50200173 - PB1D10 SINE Alu 0 117 41 7 1706 462 136 0 0 chr1 146995659 146995740 -50199692 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 1706 861 176 0 0 chr1 146996317 146996465 -50198967 + B1_Mus1 SINE Alu 1 148 0 7 1706 425 270 80 86 chr1 146996326 146996488 -50198944 + B4 SINE B4 94 254 -38 7 1706 2149 140 16 0 chr1 146996499 146996871 -50198561 - MusHAL1 LINE L1 -1918 794 417 7 1706 16045 65 5 3 chr1 146997153 147000000 -50195432 - L1Md_F2 LINE L1 -2 6580 3726 7 1706 17692 92 11 6 chr1 147000000 147003610 -50191822 - L1Md_F LINE L1 -2158 3725 98 1 1706 1034 231 14 24 chr1 147003598 147003895 -50191537 - L1VL1 LINE L1 -6127 295 2 2 1706 980 117 0 0 chr1 147003897 147004051 -50191381 - L1VL4 LINE L1 -2287 1272 1119 3 1706 4846 121 1 1 chr1 147004051 147004773 -50190659 - L1_Mus4 LINE L1 0 6636 5915 4 1706 3703 120 58 0 chr1 147004775 147005497 -50189935 + L1_Mus4 LINE L1 5172 5928 -708 4 1706 2747 181 44 15 chr1 147005495 147006339 -50189093 - L1VL4 LINE L1 -2430 1129 259 3 1706 656 260 6 17 chr1 147006402 147006574 -50188858 - Lx9 LINE L1 -445 7199 7030 5 1706 1329 189 34 10 chr1 147006572 147006866 -50188566 + Lx9 LINE L1 7214 7514 -130 5 1706 341 219 50 8 chr1 147006918 147006963 -50188469 + Lx9 LINE L1 7472 7516 -128 6 1706 189 0 0 0 chr1 147006963 147006984 -50188448 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1706 341 219 50 8 chr1 147006984 147007058 -50188374 + Lx9 LINE L1 7517 7595 -49 6 1706 579 15 0 0 chr1 147007154 147007222 -50188210 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1706 203 254 32 0 chr1 147007605 147007668 -50187764 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1706 429 20 0 0 chr1 147008026 147008076 -50187356 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1706 447 370 45 40 chr1 147008102 147008476 -50186956 - Lx9 LINE L1 -203 7441 7066 1 1706 1336 212 30 50 chr1 147008515 147008623 -50186809 + MTB_Mm LTR MaLR 78 183 -224 1 1706 249 108 0 0 chr1 147008623 147008660 -50186772 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 1 1706 1336 212 30 50 chr1 147008660 147008888 -50186544 + MTB_Mm LTR MaLR 184 407 0 1 1706 228 245 0 0 chr1 147008890 147008943 -50186489 - Lx9 LINE L1 -615 7029 6977 1 1706 296 346 19 19 chr1 147008960 147009063 -50186369 - B4A SINE B4 -185 107 5 1 1706 589 313 125 19 chr1 147010082 147010395 -50185037 - Lx8 LINE L1 -375 7098 6753 1 1706 236 189 38 0 chr1 147010653 147010706 -50184726 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 1 1706 21 36 0 0 chr1 147010915 147010943 -50184489 + AT_rich Low_complexity Low_complexity 1 28 0 1 1706 1869 309 69 32 chr1 147011112 147012023 -50183409 + Lx7 LINE L1 6392 7336 -360 1 1706 475 282 28 114 chr1 147013179 147013355 -50182077 - MTE2b LTR MaLR -62 317 157 1 1706 503 291 26 39 chr1 147013501 147013655 -50181777 - RSINE1 SINE B4 -13 152 1 2 1706 407 348 12 37 chr1 147014159 147014323 -50181109 + B3A SINE B2 1 160 -38 2 1706 504 0 0 0 chr1 147014338 147014394 -50181038 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1706 925 108 14 0 chr1 147015176 147015324 -50180108 - L1_Mus2 LINE L1 0 6566 6417 2 1706 19288 59 6 3 chr1 147015685 147018826 -50176606 - L1Md_F2 LINE L1 -12 6570 3416 2 1706 3746 64 6 0 chr1 147018814 147019317 -50176115 + L1Md_F2 LINE L1 2828 3333 -2550 2 1706 14216 73 54 0 chr1 147019314 147021414 -50174018 - L1Md_F2 LINE L1 -616 5966 3735 2 1706 300 83 0 0 chr1 147021416 147021464 -50173968 + (T)n Simple_repeat Simple_repeat 1 48 0 2 1706 33377 31 0 0 chr1 147021478 147026146 -50169286 - L1Md_T LINE L1 0 6582 1915 2 1706 5601 94 0 0 chr1 147026146 147026940 -50168492 - L1Md_F2 LINE L1 -2124 3759 2966 2 1706 3763 99 0 0 chr1 147026930 147027425 -50168007 - L1Md_F2 LINE L1 -5760 856 362 2 1706 382 279 89 24 chr1 147027480 147027684 -50167748 + L1M4 LINE L1 5196 5411 -773 2 1706 1355 221 24 7 chr1 147027694 147027981 -50167451 + ORR1B2 LTR MaLR 68 359 -8 2 1706 24 53 0 0 chr1 147028155 147028193 -50167239 + AT_rich Low_complexity Low_complexity 1 38 0 3 1706 213 250 26 0 chr1 147028564 147028640 -50166792 + T-rich Low_complexity Low_complexity 1 78 0 3 1706 239 266 109 31 chr1 147029393 147029622 -50165810 - L1MC LINE L1 -2378 3768 3522 3 1706 750 308 69 27 chr1 147030463 147030943 -50164489 + L1MA9 LINE L1 5302 5801 -490 3 1706 252 308 65 57 chr1 147032252 147032531 -50162901 + L1MA9 LINE L1 5825 6105 -207 3 1706 4906 154 29 15 chr1 147032572 147033438 -50161994 - Lx3B LINE L1 -6 6967 6090 3 1706 25 90 0 0 chr1 147033516 147033583 -50161849 + AT_rich Low_complexity Low_complexity 1 67 0 3 1706 366 313 76 8 chr1 147034101 147034233 -50161199 - B3 SINE B2 -6 210 70 3 1706 403 300 62 75 chr1 147034311 147034433 -50160999 - L1M3 LINE L1 -539 5629 5499 3 1706 3200 78 0 0 chr1 147034433 147034856 -50160576 - L1_Mus2 LINE L1 -2 6564 6142 3 1706 403 300 62 75 chr1 147034856 147035039 -50160393 - L1M3 LINE L1 -670 5498 5328 3 1706 365 230 135 73 chr1 147035042 147035220 -50160212 - Lx6 LINE L1 -23 7437 7249 3 1706 272 363 15 88 chr1 147035254 147035390 -50160042 - B1_Mur1 SINE Alu -23 126 1 4 1706 1691 213 18 57 chr1 147035578 147035961 -50159471 - ORR1C1 LTR MaLR -10 368 1 4 1706 1118 82 0 7 chr1 147036098 147036246 -50159186 + B1_Mm SINE Alu 1 147 0 4 1706 558 43 0 0 chr1 147036296 147036365 -50159067 + (TAA)n Simple_repeat Simple_repeat 2 70 0 4 1706 450 327 17 85 chr1 147036396 147036552 -50158880 + RSINE1 SINE B4 1 152 -13 4 1706 342 0 0 0 chr1 147036552 147036590 -50158842 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1706 450 327 17 85 chr1 147036590 147036610 -50158822 + RSINE1 SINE B4 153 165 0 4 1706 22 0 0 0 chr1 147036950 147036972 -50158460 + AT_rich Low_complexity Low_complexity 1 22 0 4 1706 8257 148 11 14 chr1 147038174 147039695 -50155737 + Lx3B LINE L1 5464 6973 0 4 1706 212 158 18 0 chr1 147039709 147039766 -50155666 + A-rich Low_complexity Low_complexity 1 58 0 4 1706 25 51 0 0 chr1 147039985 147040024 -50155408 + AT_rich Low_complexity Low_complexity 1 39 0 4 1706 356 295 23 15 chr1 147040612 147040743 -50154689 - L1ME3A LINE L1 -345 5828 5697 5 1706 294 375 81 50 chr1 147041057 147041340 -50154092 + MER76 LTR ERVL 22 313 -378 5 1706 28 0 0 0 chr1 147041341 147041369 -50154063 + AT_rich Low_complexity Low_complexity 1 28 0 5 1706 192 40 0 0 chr1 147041452 147041477 -50153955 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 5 1706 267 346 39 10 chr1 147041512 147041614 -50153818 - Lx8 LINE L1 -179 7294 7190 5 1706 276 311 0 26 chr1 147041902 147041978 -50153454 + MER76 LTR ERVL 614 687 -4 5 1706 653 268 78 13 chr1 147043420 147043651 -50151781 - Lx9 LINE L1 -142 7502 7257 5 1706 2463 236 26 18 chr1 147044703 147045272 -50150160 + L1_Mur3 LINE L1 603 1176 -6552 5 1706 2396 153 29 6 chr1 147045280 147045759 -50149673 + L1_Mur3 LINE L1 1280 1769 -4111 5 1706 640 129 0 8 chr1 147045764 147045881 -50149551 + L1_Mur3 LINE L1 5185 5300 -580 5 1706 1910 181 34 14 chr1 147045884 147046238 -50149194 - Lx4B LINE L1 -49 7009 6649 5 1706 182 33 67 0 chr1 147046239 147046269 -50149163 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1706 838 207 175 8 chr1 147046269 147046537 -50148895 + L1_Mur3 LINE L1 5318 5630 -250 5 1706 898 254 35 19 chr1 147046532 147046793 -50148639 + Lx7 LINE L1 7395 7659 -37 5 1706 943 42 0 0 chr1 147046817 147046935 -50148497 + B1_Mus1 SINE Alu 25 142 -6 6 1706 194 0 0 37 chr1 147046937 147046964 -50148468 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1706 767 173 0 0 chr1 147047058 147047191 -50148241 + URR1B DNA MER1_type 93 225 0 6 1706 1559 297 88 40 chr1 147047724 147048083 -50147349 + RCHARR1 DNA MER1_type 1 392 -582 6 1706 222 37 0 0 chr1 147048083 147048110 -50147322 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1706 1559 297 88 40 chr1 147048110 147048500 -50146932 + RCHARR1 DNA MER1_type 393 785 -189 6 1706 407 346 73 29 chr1 147048655 147048792 -50146640 - B1_Mur1 SINE Alu 0 149 7 6 1706 2684 181 4 2 chr1 147049002 147049468 -50145964 - L1_Mur1 LINE L1 -99 5787 5321 6 1706 888 133 7 7 chr1 147049484 147049628 -50145804 + Lx3B LINE L1 5735 5878 -1095 6 1706 1218 277 94 2 chr1 147049624 147050064 -50145368 + Lx3C LINE L1 6154 6936 -40 6 1706 318 167 0 0 chr1 147050102 147050162 -50145270 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1706 309 337 10 10 chr1 147050301 147050400 -50145032 - B4A SINE B4 -173 119 21 7 1706 310 333 0 0 chr1 147050516 147050609 -50144823 + MTE2a LTR MaLR 1 93 -286 7 1706 285 29 0 0 chr1 147050614 147050648 -50144784 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1706 495 0 0 0 chr1 147050648 147050702 -50144730 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1706 607 313 36 9 chr1 147050704 147050923 -50144509 + MTE2a LTR MaLR 154 378 -1 7 1706 473 96 0 1 chr1 147051166 147051230 -50144202 - L1_Mus3 LINE L1 -133 6505 6443 7 1706 535 114 120 16 chr1 147051230 147051355 -50144077 + L1_Mus3 LINE L1 6497 6634 -4 7 1706 2162 172 11 11 chr1 147051423 147051799 -50143633 - RLTR14 LTR ERV1 0 382 7 7 1706 423 315 115 0 chr1 147051993 147052219 -50143213 + MER2 DNA MER2_type 1 252 -93 7 1706 1011 92 0 14 chr1 147052394 147052538 -50142894 - B1_Mm SINE Alu 0 147 6 7 1706 625 220 17 93 chr1 147052399 147052612 -50142820 - ID_B1 SINE B4 -68 224 21 7 1706 368 287 80 57 chr1 147052657 147052924 -50142508 - HERVL74-int LTR ERVL -83 3473 2979 7 1706 551 378 34 10 chr1 147052972 147053266 -50142166 - HERVL74-int LTR ERVL -2788 2897 2597 7 1706 1679 231 122 15 chr1 147053688 147054293 -50141139 + L1Md_F LINE L1 287 986 -5551 8 1706 27227 77 74 1 chr1 147054292 147058450 -50136982 - L1Md_F2 LINE L1 0 6582 2072 8 1706 201 39 0 0 chr1 147058450 147058476 -50136956 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1706 27227 82 8 1 chr1 147058476 147059409 -50136023 - L1Md_F2 LINE L1 -3812 2071 1134 8 1706 4454 114 1 17 chr1 147059409 147060071 -50135361 + L1_Mus2 LINE L1 5915 6566 0 8 1706 576 338 105 34 chr1 147060528 147061082 -50134350 - HERVL74-int LTR ERVL -3795 1890 1298 7 1706 438 341 142 37 chr1 147062185 147062508 -50132924 - LTR52 LTR ERVL -54 367 11 8 1707 500 85 11 11 chr1 147063435 147063530 -50131902 - L1_Mus3 LINE L1 -8 6630 6536 8 1707 310 341 43 29 chr1 147063576 147063597 -50131835 - B4 SINE B4 -65 227 210 8 1707 509 44 15 0 chr1 147063597 147063665 -50131767 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 8 1707 520 176 20 2 chr1 147063667 147063782 -50131650 - B1_Mur4 SINE Alu -4 116 2 8 1707 8487 143 28 1 chr1 147064074 147065877 -50129555 + L1_Mus2 LINE L1 671 2579 -3304 8 1707 2327 42 7 0 chr1 147065872 147066160 -50129272 - L1_Mm LINE L1 -1297 4586 4297 9 1707 785 54 0 0 chr1 147066162 147066274 -50129158 + L1Md_F2 LINE L1 6408 6519 -63 9 1707 20403 125 15 8 chr1 147066290 147069851 -50125581 + L1_Mus2 LINE L1 2567 6146 -420 8 1707 1045 216 118 20 chr1 147069848 147070145 -50125287 - RMER1B Other Other -33 1033 708 9 1707 239 203 24 48 chr1 147072699 147072782 -50122650 + T-rich Low_complexity Low_complexity 3 83 0 9 1707 970 60 90 0 chr1 147075679 147075812 -50119620 + B1_Mus2 SINE Alu 2 146 -1 9 1707 284 268 96 156 chr1 147076925 147077124 -50118308 + B4 SINE B4 106 292 0 9 1707 390 74 0 0 chr1 147077150 147077204 -50118228 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1707 35688 38 6 8 chr1 147077257 147082400 -50113032 + L1Md_T LINE L1 457 5586 -297 9 1707 8221 43 2 0 chr1 147082400 147083394 -50112038 + L1Md_T LINE L1 5587 6582 0 9 1707 1820 237 103 9 chr1 147084494 147084941 -50110491 + Lx6 LINE L1 6763 7251 -209 9 1707 490 248 0 0 chr1 147084938 147085043 -50110389 + Lx9 LINE L1 7151 7255 -389 9 1707 672 231 87 23 chr1 147085039 147085269 -50110163 + Lx6 LINE L1 7253 7694 -2 9 1707 41 21 0 0 chr1 147086018 147086066 -50109366 + AT_rich Low_complexity Low_complexity 1 48 0 1 1707 1380 260 131 7 chr1 147086066 147086477 -50108955 - Lx5 LINE L1 -11 7039 6578 1 1707 603 237 18 55 chr1 147086763 147086928 -50108504 + Lx5 LINE L1 6822 6980 -70 1 1707 22 0 0 0 chr1 147088585 147088607 -50106825 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 380 349 15 36 chr1 147089279 147089475 -50105957 + B3A SINE B2 3 194 -4 1 1707 254 219 67 77 chr1 147089731 147089835 -50105597 + MLT1A1 LTR MaLR 5 107 -301 1 1707 323 192 37 37 chr1 147089885 147089993 -50105439 - Lx7 LINE L1 0 7696 7589 1 1707 3358 35 2 0 chr1 147090147 147090542 -50104890 - MTA_Mm LTR MaLR 0 396 1 1 1707 281 280 108 15 chr1 147090560 147090711 -50104721 + MLT1A1 LTR MaLR 204 391 -17 1 1707 306 323 73 0 chr1 147092824 147092948 -50102484 + Lx6 LINE L1 7242 7374 -86 1 1707 564 217 111 124 chr1 147092993 147093219 -50102213 - URR1A DNA MER1_type -3 223 1 1 1707 22 0 0 0 chr1 147093337 147093359 -50102073 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 738 91 0 0 chr1 147093519 147093618 -50101814 - L1_Mur2 LINE L1 -706 5171 5073 1 1707 6583 110 55 10 chr1 147093649 147094655 -50100777 + Lx LINE L1 5587 6637 -17 1 1707 531 318 32 32 chr1 147094945 147095195 -50100237 - Lx6 LINE L1 -17 7443 7194 1 1707 250 218 0 0 chr1 147095235 147095290 -50100142 + Lx6 LINE L1 7012 7066 -394 1 1707 37874 30 0 0 chr1 147096155 147102630 -50092802 - L1Md_T LINE L1 0 6585 14 1 1707 270 56 0 0 chr1 147104868 147104904 -50090528 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1707 1001 90 11 27 chr1 147105354 147105537 -50089895 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1707 302 254 112 63 chr1 147105908 147106051 -50089381 + L1MC5 LINE L1 7319 7468 -493 1 1707 600 298 66 4 chr1 147106076 147106319 -50089113 + L1M3 LINE L1 4589 4846 -1294 1 1707 6061 170 48 8 chr1 147106926 147108086 -50087346 - Lx2B LINE L1 -4 6996 5790 1 1707 243 0 0 0 chr1 147108094 147108121 -50087311 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1707 2748 72 34 5 chr1 147108124 147108502 -50086930 - L1Md_F2 LINE L1 -13 6569 6181 1 1707 2069 173 11 0 chr1 147108532 147108902 -50086530 - L1_Mm LINE L1 -83 5800 5427 1 1707 424 273 24 30 chr1 147109316 147109472 -50085960 - Lx7 LINE L1 -2 7694 7555 1 1707 315 0 0 0 chr1 147109472 147109507 -50085925 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 1707 307 302 47 47 chr1 147109507 147109541 -50085891 - Lx7 LINE L1 -154 7306 7270 1 1707 445 153 0 45 chr1 147109621 147109710 -50085722 - Lx LINE L1 -106 6548 6464 1 1707 316 98 98 0 chr1 147109710 147109771 -50085661 + Lx LINE L1 6583 6649 -5 1 1707 1182 112 0 0 chr1 147109787 147109965 -50085467 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1707 651 60 0 0 chr1 147109965 147110049 -50085383 + (GGA)n Simple_repeat Simple_repeat 2 85 0 1 1707 674 262 138 47 chr1 147110451 147110792 -50084640 - ORR1D1 LTR MaLR 0 374 3 1 1707 5839 220 44 4 chr1 147111166 147112409 -50083023 - Lx4B LINE L1 -4 7054 5762 1 1707 1435 163 33 4 chr1 147112407 147112678 -50082754 + L1_Mur2 LINE L1 4803 5081 -796 1 1707 1656 183 59 6 chr1 147112668 147113009 -50082423 + L1_Mur2 LINE L1 5371 5729 -148 1 1707 200 233 0 0 chr1 147113194 147113237 -50082195 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1707 34 20 0 19 chr1 147114036 147114073 -50081359 + AT_rich Low_complexity Low_complexity 1 37 0 1 1707 2510 196 20 4 chr1 147114073 147114564 -50080868 - Lx4A LINE L1 -2 7056 6558 1 1707 34 20 0 19 chr1 147114564 147114578 -50080854 + AT_rich Low_complexity Low_complexity 1 14 0 1 1707 1892 200 12 0 chr1 147116418 147116579 -50078853 + L1VL4 LINE L1 930 1092 -5565 1 1707 294 29 0 0 chr1 147116579 147116614 -50078818 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1 1707 16171 181 62 6 chr1 147116614 147118936 -50076496 + L1VL4 LINE L1 1093 3472 -2414 1 1707 486 0 0 0 chr1 147118936 147118990 -50076442 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1707 16171 180 64 7 chr1 147118990 147120336 -50075096 + L1VL4 LINE L1 3473 4969 -917 1 1707 2480 246 56 105 chr1 147120333 147120389 -50075043 + L1_Mus2 LINE L1 5625 5674 -892 1 1707 551 24 71 0 chr1 147120389 147120473 -50074959 - L1Md_F2 LINE L1 -2 6580 6491 1 1707 2480 248 56 103 chr1 147120473 147121451 -50073981 + L1_Mus2 LINE L1 5675 6619 -357 1 1707 3242 58 5 0 chr1 147121451 147121861 -50073571 + L1_Mus1 LINE L1 6156 6567 0 1 1707 2390 271 48 68 chr1 147121861 147122205 -50073227 + L1_Mus2 LINE L1 6620 7057 -1 1 1707 310 372 47 21 chr1 147122274 147122466 -50072966 + MLT1C LTR MaLR 250 446 -21 1 1707 269 280 13 0 chr1 147122486 147122561 -50072871 + MLT1C LTR MaLR 485 560 0 1 1707 871 317 56 18 chr1 147122561 147122939 -50072493 + MLT1C-int LTR MaLR 1 513 -858 1 1707 387 141 0 0 chr1 147123033 147123111 -50072321 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 1 1707 510 287 145 17 chr1 147125031 147125220 -50070212 - B3A SINE B2 -3 213 1 1 1707 207 0 0 0 chr1 147125940 147125963 -50069469 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1707 845 227 43 0 chr1 147126374 147126559 -50068873 - Lx6 LINE L1 -289 7171 6979 1 1707 424 254 29 14 chr1 147126607 147126768 -50068664 - L1_Rod LINE L1 -425 5455 5295 1 1707 1496 275 54 17 chr1 147126808 147127400 -50068032 - L1_Rod LINE L1 -709 5138 4525 1 1707 459 333 17 6 chr1 147127565 147127743 -50067689 + RMER30 DNA MER1_type 2 181 -21 1 1707 532 288 86 0 chr1 147128339 147128502 -50066930 + Lx9 LINE L1 6976 7152 -492 1 1707 300 296 111 0 chr1 147128710 147128818 -50066614 + RMER12 LTR ERVK 740 859 -463 1 1707 32 57 0 0 chr1 147128923 147128976 -50066456 + AT_rich Low_complexity Low_complexity 1 53 0 1 1707 387 0 0 0 chr1 147129711 147129754 -50065678 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1707 440 176 10 0 chr1 147129754 147129856 -50065576 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 1707 553 198 155 36 chr1 147129923 147130091 -50065341 + Lx9 LINE L1 7261 7448 -196 1 1707 5004 158 25 6 chr1 147130243 147131096 -50064336 + Lx2A1 LINE L1 6137 7005 -3 1 1707 209 57 29 0 chr1 147131097 147131132 -50064300 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1707 23 0 0 0 chr1 147131825 147131848 -50063584 + AT_rich Low_complexity Low_complexity 1 23 0 1 1707 3808 93 5 14 chr1 147133088 147133652 -50061780 - L1_Mus4 LINE L1 0 6636 6078 1 1707 522 356 6 0 chr1 147133657 147133817 -50061615 - B4 SINE B4 -112 180 20 1 1707 3109 24 8 3 chr1 147133959 147134386 -50061046 + L1Md_F3 LINE L1 6197 6584 0 1 1707 354 45 0 0 chr1 147134436 147134480 -50060952 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1707 253 140 35 0 chr1 147134495 147134552 -50060880 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1707 423 0 0 0 chr1 147134628 147134675 -50060757 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1707 252 0 0 0 chr1 147134675 147134702 -50060730 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1707 203 184 0 0 chr1 147135644 147135682 -50059750 + A-rich Low_complexity Low_complexity 1 38 0 1 1707 488 285 36 59 chr1 147136185 147136405 -50059027 - B3 SINE B2 -1 215 1 1 1707 1107 286 49 7 chr1 147136890 147137196 -50058236 + Lx6 LINE L1 7041 7359 -101 1 1707 211 190 35 0 chr1 147137204 147137262 -50058170 + T-rich Low_complexity Low_complexity 2 61 0 1 1707 1708 276 89 113 chr1 147137275 147138142 -50057290 - RMER1B Other Other -177 889 44 1 1707 516 116 0 0 chr1 147138818 147138904 -50056528 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1707 21 0 0 0 chr1 147139047 147139068 -50056364 + GC_rich Low_complexity Low_complexity 1 21 0 1 1707 2092 275 17 19 chr1 147139956 147140548 -50054884 + Lx8 LINE L1 6282 6872 -601 1 1707 315 0 0 0 chr1 147141146 147141181 -50054251 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1707 1990 133 20 58 chr1 147142122 147142464 -50052968 + ORR1A4 LTR MaLR 1 329 0 1 1707 475 335 54 22 chr1 147142516 147142922 -50052510 - Lx9 LINE L1 -146 7498 7080 1 1707 618 68 0 0 chr1 147142941 147143029 -50052403 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1707 378 74 0 0 chr1 147143029 147143082 -50052350 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1707 864 65 0 0 chr1 147143166 147143290 -50052142 + (CAAAC)n Simple_repeat Simple_repeat 2 125 0 1 1707 1327 297 70 30 chr1 147143300 147143869 -50051563 + Lx9 LINE L1 6423 7014 -630 1 1707 216 0 0 0 chr1 147143917 147143941 -50051491 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1707 495 0 0 0 chr1 147143943 147143998 -50051434 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1707 537 283 14 48 chr1 147144013 147144158 -50051274 - B3A SINE B2 -56 142 3 1 1707 21 36 0 0 chr1 147144203 147144231 -50051201 + AT_rich Low_complexity Low_complexity 1 28 0 1 1707 522 191 14 66 chr1 147144331 147144544 -50050888 + RMER17C LTR ERVK 72 273 -137 1 1707 1194 334 29 59 chr1 147144684 147145279 -50050153 - Lx5 LINE L1 -5 7045 6469 1 1707 427 278 9 9 chr1 147145267 147145376 -50050056 - Lx5 LINE L1 -686 6364 6256 1 1707 406 264 129 0 chr1 147146559 147146577 -50048855 - ORR1D1 LTR MaLR -3 371 350 1 1707 180 0 0 0 chr1 147146577 147146597 -50048835 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1707 406 264 129 0 chr1 147146597 147146718 -50048714 - ORR1D1 LTR MaLR -25 349 215 1 1707 268 262 0 15 chr1 147146883 147146949 -50048483 + MTEb LTR MaLR 292 356 -23 1 1707 204 97 0 0 chr1 147147963 147147994 -50047438 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1707 41 48 0 0 chr1 147148522 147148584 -50046848 + AT_rich Low_complexity Low_complexity 1 62 0 1 1707 225 220 0 20 chr1 147148826 147148877 -50046555 + MTE2a LTR MaLR 286 335 -44 1 1707 520 332 68 47 chr1 147149082 147149761 -50045671 - L1MA7 LINE L1 -3 6288 5596 1 1707 472 324 144 17 chr1 147149789 147150191 -50045241 + L1M2 LINE L1 4854 5306 -837 1 1707 886 313 53 0 chr1 147150214 147150495 -50044937 - RMER1B Other Other -717 349 54 1 1707 736 330 80 42 chr1 147150978 147151364 -50044068 + MTD LTR MaLR 19 419 0 1 1707 288 353 79 32 chr1 147151760 147151950 -50043482 + MIRc SINE MIR 49 247 -21 1 1707 270 332 56 40 chr1 147152320 147152518 -50042914 - RMER2 LTR ERV1 -18 549 349 1 1707 6177 60 16 5 chr1 147152650 147153454 -50041978 + L1Md_F2 LINE L1 5770 6582 0 1 1707 410 299 58 84 chr1 147153518 147153708 -50041724 + B3A SINE B2 2 186 -9 1 1707 342 245 9 9 chr1 147153753 147153860 -50041572 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1707 8930 158 61 13 chr1 147153962 147155715 -50039717 - L1_Mur2 LINE L1 -888 4989 3153 2 1707 522 0 0 0 chr1 147155789 147155847 -50039585 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 1707 581 244 0 0 chr1 147156480 147156603 -50038829 - Lx9 LINE L1 -716 6928 6806 2 1707 510 84 0 12 chr1 147157034 147157118 -50038314 - L1_Mus2 LINE L1 0 6566 6484 2 1707 706 292 72 13 chr1 147158297 147158647 -50036785 - MER67D LTR ERV1 -182 479 59 2 1707 2619 113 146 5 chr1 147158845 147159289 -50036143 - Lx3_Mus LINE L1 0 7009 6503 2 1707 2717 133 28 51 chr1 147159288 147159384 -50036048 + Lx3_Mus LINE L1 5728 5823 -1186 2 1707 4645 76 8 3 chr1 147159384 147160004 -50035428 + L1_Mus1 LINE L1 5945 6567 0 2 1707 2717 133 28 51 chr1 147160004 147160118 -50035314 + Lx3_Mus LINE L1 5824 5917 -1092 2 1707 495 0 0 0 chr1 147160118 147160173 -50035259 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1707 2717 133 28 51 chr1 147160173 147160468 -50034964 + Lx3_Mus LINE L1 5918 6222 -787 2 1707 225 333 83 78 chr1 147160618 147160810 -50034622 - B3A SINE B2 -5 193 1 2 1707 494 75 12 0 chr1 147160900 147160980 -50034452 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1707 25 51 0 0 chr1 147161933 147161972 -50033460 + AT_rich Low_complexity Low_complexity 1 39 0 2 1707 7174 81 17 0 chr1 147162681 147163653 -50031779 - L1_Mus1 LINE L1 0 6654 5588 2 1707 3573 107 8 2 chr1 147163660 147164183 -50031249 + L1_Mus1 LINE L1 5055 5580 -303 2 1707 779 214 42 50 chr1 147164343 147164604 -50030828 - Lx7 LINE L1 -82 7614 7356 2 1707 265 62 0 40 chr1 147164608 147164658 -50030774 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 2 1707 770 240 5 39 chr1 147164735 147164939 -50030493 - Lx7 LINE L1 -342 7354 7158 2 1707 2435 123 45 0 chr1 147167524 147167905 -50027527 - Lx3_Mus LINE L1 -8 7001 6604 2 1707 251 265 36 35 chr1 147169135 147169221 -50026211 - MLT2E LTR ERVL -530 98 9 2 1707 576 352 86 45 chr1 147169305 147169944 -50025488 - Lx8 LINE L1 -1 7472 6808 2 1707 1031 278 35 7 chr1 147170340 147170630 -50024802 - ORR1D1 LTR MaLR 0 374 77 2 1707 431 155 0 12 chr1 147170635 147170720 -50024712 + CT-rich Low_complexity Low_complexity 1 84 0 2 1707 448 49 0 32 chr1 147170720 147170783 -50024649 - B1_Mm SINE Alu -6 141 81 2 1707 392 162 0 13 chr1 147170780 147170855 -50024577 - ORR1D1 LTR MaLR -295 79 6 2 1707 1622 259 38 45 chr1 147171051 147171539 -50023893 + Lx9 LINE L1 7047 7525 -119 2 1707 504 0 0 0 chr1 147171539 147171595 -50023837 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1707 1622 259 38 45 chr1 147171595 147171681 -50023751 + Lx9 LINE L1 7526 7617 -27 2 1707 395 314 56 56 chr1 147171693 147171909 -50023523 + B3A SINE B2 1 216 0 2 1707 31 107 0 0 chr1 147174931 147175053 -50020379 + AT_rich Low_complexity Low_complexity 1 122 0 2 1707 225 340 6 0 chr1 147175276 147175435 -50019997 + L1M3 LINE L1 3013 3172 -2971 2 1707 235 339 60 45 chr1 147175597 147175798 -50019634 + L1M3 LINE L1 3378 3581 -2559 2 1707 388 263 10 21 chr1 147175800 147175897 -50019535 + MTE2b LTR MaLR 3 98 -281 2 1707 371 354 31 0 chr1 147175914 147176044 -50019388 + MTE2b LTR MaLR 233 366 -13 2 1707 459 0 0 0 chr1 147176931 147176982 -50018450 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1707 252 0 0 0 chr1 147176982 147177009 -50018423 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1707 430 320 24 0 chr1 147178340 147178465 -50016967 + B3A SINE B2 4 131 -67 2 1707 240 130 0 0 chr1 147178498 147178544 -50016888 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1707 348 64 0 0 chr1 147178556 147178603 -50016829 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1707 21 0 0 0 chr1 147178608 147178629 -50016803 + AT_rich Low_complexity Low_complexity 1 21 0 2 1707 916 128 0 15 chr1 147178633 147178768 -50016664 + B1_Mus1 SINE Alu 15 147 -1 2 1707 212 150 0 32 chr1 147178769 147178831 -50016601 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 2 1707 1595 56 14 9 chr1 147178979 147179195 -50016237 + MTB LTR MaLR 184 400 0 2 1707 402 327 103 0 chr1 147179237 147179402 -50016030 - MLT2B1 LTR ERVL -336 184 3 2 1707 23 0 0 0 chr1 147180310 147180333 -50015099 + AT_rich Low_complexity Low_complexity 1 23 0 2 1707 887 143 41 0 chr1 147180471 147180618 -50014814 - RMER6A LTR ERVK -12 744 592 2 1707 21 57 0 0 chr1 147180805 147180840 -50014592 + AT_rich Low_complexity Low_complexity 1 35 0 2 1707 3812 128 47 30 chr1 147180898 147181144 -50014288 - L1_Mur2 LINE L1 -4372 1505 1255 2 1707 2752 79 68 0 chr1 147181144 147181538 -50013894 - BGLII LTR ERVK 0 421 1 2 1707 3812 196 66 58 chr1 147181538 147182386 -50013046 - L1_Mur2 LINE L1 -5832 1254 409 2 1707 1267 287 49 56 chr1 147182386 147182854 -50012578 - RMER19C LTR ERVK -9 602 138 2 1707 368 345 21 78 chr1 147183094 147183286 -50012146 + MTEa LTR MaLR 1 181 -198 2 1707 552 234 32 0 chr1 147184243 147184397 -50011035 - L1_Mur3 LINE L1 -441 5439 5281 2 1707 1108 54 0 7 chr1 147184520 147184669 -50010763 + B1_Mus1 SINE Alu 1 148 0 2 1707 368 301 78 17 chr1 147184682 147184861 -50010571 + Lx7 LINE L1 6886 7075 -621 2 1707 35 24 0 0 chr1 147185683 147185725 -50009707 + AT_rich Low_complexity Low_complexity 1 42 0 2 1707 1902 136 16 8 chr1 147185778 147186141 -50009291 - L1_Mur1 LINE L1 -2517 3369 3004 2 1707 596 162 45 0 chr1 147186141 147186252 -50009180 - B2_Mm1t SINE B2 0 193 78 2 1707 594 120 0 0 chr1 147186252 147186344 -50009088 - L1_Mur1 LINE L1 -3313 2573 2482 2 1707 451 264 164 9 chr1 147186336 147186550 -50008882 - L1_Mur1 LINE L1 -6161 823 577 2 1707 235 259 0 17 chr1 147186694 147186753 -50008679 - L1_Mur1 LINE L1 -6216 766 709 2 1707 24 0 0 0 chr1 147188379 147188403 -50007029 + AT_rich Low_complexity Low_complexity 1 24 0 2 1707 579 203 125 0 chr1 147189419 147189547 -50005885 - B1_Mur2 SINE Alu -1 148 5 2 1707 337 296 0 66 chr1 147189649 147189801 -50005631 + B1F SINE Alu 3 144 -5 2 1707 387 120 40 0 chr1 147189831 147189906 -50005526 - L1Md_F2 LINE L1 0 6582 6505 2 1707 2676 75 6 8 chr1 147189906 147190270 -50005162 - L1Md_F2 LINE L1 -190 6392 6030 2 1707 21 0 0 0 chr1 147190609 147190630 -50004802 + AT_rich Low_complexity Low_complexity 1 21 0 2 1707 466 319 66 24 chr1 147191610 147191822 -50003610 + RMER15 LTR ERVL 301 521 -54 2 1707 870 226 115 4 chr1 147191966 147192219 -50003213 + Lx6 LINE L1 5904 6184 -1276 2 1707 3801 204 35 44 chr1 147192234 147193119 -50002313 + RMER13B LTR ERVK 1 877 -31 2 1707 1814 284 86 34 chr1 147193143 147193590 -50001842 + Lx6 LINE L1 6202 6641 -819 2 1707 585 0 0 0 chr1 147193590 147193655 -50001777 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 213 1814 289 66 29 chr1 147193655 147194359 -50001073 + Lx6 LINE L1 6476 7452 -8 2 1708 273 57 0 0 chr1 147195472 147195507 -49999925 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 2 1708 198 0 0 0 chr1 147195515 147195537 -49999895 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2 1708 971 90 0 0 chr1 147195544 147195677 -49999755 - B1_Mus1 SINE Alu -13 135 3 2 1708 986 273 8 4 chr1 147195696 147195964 -49999468 - Lx6 LINE L1 -8 7452 7184 2 1708 433 301 114 37 chr1 147195964 147196209 -49999223 - RMER5 LTR ERV1 -67 467 204 2 1708 23 0 0 0 chr1 147196338 147196361 -49999071 + AT_rich Low_complexity Low_complexity 1 23 0 2 1708 358 216 30 16 chr1 147196788 147196879 -49998553 + RLTR16 LTR ERVK 1 90 -478 2 1708 2314 283 30 30 chr1 147196914 147197614 -49997818 + Lx6 LINE L1 6761 7460 0 2 1708 31 26 0 0 chr1 147197761 147197799 -49997633 + AT_rich Low_complexity Low_complexity 1 38 0 2 1708 305 380 36 98 chr1 147198678 147198955 -49996477 - MER77 LTR ERVL -341 266 7 2 1708 1125 68 7 0 chr1 147199670 147199816 -49995616 - B1_Mus1 SINE Alu -1 147 1 2 1708 317 125 0 18 chr1 147200163 147200220 -49995212 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 1708 268 327 28 9 chr1 147200420 147200528 -49994904 - MLT1H LTR MaLR -376 173 64 2 1708 420 20 0 0 chr1 147200723 147200772 -49994660 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2 1708 528 153 20 0 chr1 147201125 147201224 -49994208 + Lx3C LINE L1 6452 6554 -446 2 1708 5027 112 3 8 chr1 147201587 147202326 -49993106 + Lx3_Mus LINE L1 6274 7008 -1 2 1708 5884 38 1 0 chr1 147202377 147203087 -49992345 - L1Md_T LINE L1 0 6582 5872 2 1708 30 69 0 0 chr1 147203204 147203262 -49992170 + AT_rich Low_complexity Low_complexity 1 58 0 2 1708 297 128 0 0 chr1 147203265 147203312 -49992120 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1708 1058 320 28 3 chr1 147203359 147203723 -49991709 - Lx8 LINE L1 -173 7300 6928 2 1708 230 339 143 20 chr1 147203726 147203970 -49991462 - Lx7 LINE L1 -809 6887 6614 2 1708 1406 55 20 10 chr1 147204771 147204972 -49990460 + L1_Mus1 LINE L1 6365 6567 0 2 1708 197 132 0 26 chr1 147205097 147205136 -49990296 + CT-rich Low_complexity Low_complexity 3 40 0 2 1708 207 0 0 0 chr1 147205204 147205227 -49990205 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1708 4619 148 32 1 chr1 147205384 147206170 -49989262 + Lx3B LINE L1 6158 6967 -6 2 1708 419 0 0 19 chr1 147206179 147206231 -49989201 + (TAA)n Simple_repeat Simple_repeat 1 51 0 2 1708 281 299 2 14 chr1 147206871 147207000 -49988432 + L1M2 LINE L1 5651 5777 -535 2 1708 615 246 41 21 chr1 147207752 147207897 -49987535 - B1_Mus1 SINE Alu 0 148 1 2 1708 444 367 53 5 chr1 147207897 147207953 -49987479 - ID SINE ID -142 82 18 2 1708 451 346 34 66 chr1 147208006 147208052 -49987380 - MLT1A0 LTR MaLR -12 353 313 2 1708 555 215 179 25 chr1 147208052 147208248 -49987184 - URR1A DNA MER1_type 0 226 1 2 1708 451 346 34 66 chr1 147208248 147208551 -49986881 - MLT1A0 LTR MaLR -53 312 15 2 1708 22 0 0 0 chr1 147209797 147209819 -49985613 + AT_rich Low_complexity Low_complexity 1 22 0 2 1708 21 0 0 0 chr1 147211014 147211035 -49984397 + AT_rich Low_complexity Low_complexity 1 21 0 2 1708 288 326 0 10 chr1 147212010 147212109 -49983323 + GA-rich Low_complexity Low_complexity 1 98 0 2 1708 411 371 62 45 chr1 147212119 147212563 -49982869 - MLT2B2 LTR ERVL -64 498 3 2 1708 2708 256 87 87 chr1 147212910 147213970 -49981462 + Lx7 LINE L1 6370 7429 -267 2 1708 438 189 68 68 chr1 147213954 147214142 -49981290 + Lx7 LINE L1 7561 7695 -1 2 1708 2028 208 211 55 chr1 147214401 147214992 -49980440 - RMER6C LTR ERVK -2 688 6 2 1708 1278 118 5 5 chr1 147216150 147216337 -49979095 + B2_Mm2 SINE B2 1 187 -8 2 1708 12201 184 9 20 chr1 147216624 147218410 -49977022 + Lx LINE L1 3509 5299 -584 2 1708 2149 76 0 20 chr1 147218410 147218707 -49976725 + L1_Mus1 LINE L1 6276 6566 -1 2 1708 12201 141 7 10 chr1 147218707 147220096 -49975336 + Lx LINE L1 5300 6654 0 2 1708 382 316 157 5 chr1 147220132 147220342 -49975090 + L1_Rod LINE L1 5543 5784 -63 3 1708 1080 296 78 7 chr1 147221356 147221782 -49973650 - Lx9 LINE L1 -43 7601 7146 3 1708 271 0 0 49 chr1 147221919 147221960 -49973472 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1708 254 154 0 0 chr1 147221969 147222021 -49973411 - L1Md_F2 LINE L1 -14 6568 6517 3 1708 819 108 0 0 chr1 147225000 147225129 -49970303 + (GA)n Simple_repeat Simple_repeat 1 129 0 3 1708 230 250 0 0 chr1 147225234 147225298 -49970134 + T-rich Low_complexity Low_complexity 1 64 0 3 1708 6496 114 30 14 chr1 147225313 147225338 -49970094 - Lx LINE L1 0 6654 6629 3 1708 1545 84 19 0 chr1 147225338 147225551 -49969881 - L1Md_F2 LINE L1 -12 6570 6354 3 1708 6496 120 30 15 chr1 147225551 147226552 -49968880 - Lx LINE L1 -26 6628 5644 3 1708 215 303 0 95 chr1 147227235 147227319 -49968113 + BC1_Mm scRNA scRNA 5 80 -72 3 1708 225 254 16 0 chr1 147228066 147228129 -49967303 - MER53 DNA hAT -3 190 127 3 1708 24 53 0 0 chr1 147228772 147228810 -49966622 + AT_rich Low_complexity Low_complexity 1 38 0 3 1708 184 108 0 51 chr1 147229344 147229383 -49966049 - L3 LINE CR1 -3092 1397 1361 3 1708 455 270 61 12 chr1 147229856 147230050 -49965382 - L1MA5 LINE L1 -416 5884 5631 3 1708 2775 188 42 40 chr1 147231335 147231906 -49963526 - Lx2 LINE L1 0 6997 6426 3 1708 2660 184 26 47 chr1 147231945 147232907 -49962525 - L1VL4 LINE L1 -2396 1219 100 3 1708 222 91 0 0 chr1 147233241 147233274 -49962158 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1708 368 364 16 24 chr1 147233277 147233401 -49962031 - RSINE1 SINE B4 0 165 43 3 1708 4930 143 18 5 chr1 147234388 147235223 -49960209 + L1_Mus4 LINE L1 5791 6636 0 3 1708 399 223 44 28 chr1 147236315 147236495 -49958937 - Lx9 LINE L1 0 7644 7462 3 1708 318 209 37 7 chr1 147236495 147236630 -49958802 + (TA)n Simple_repeat Simple_repeat 1 139 0 3 1708 22 70 0 0 chr1 147236675 147236718 -49958714 + AT_rich Low_complexity Low_complexity 1 43 0 3 1708 474 33 0 0 chr1 147236728 147236788 -49958644 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1708 771 279 5 24 chr1 147236791 147236997 -49958435 - Lx5 LINE L1 -277 6773 6572 3 1708 1118 205 19 50 chr1 147236997 147237259 -49958173 + Lx5 LINE L1 6797 7050 0 3 1708 24 0 0 0 chr1 147237529 147237553 -49957879 + AT_rich Low_complexity Low_complexity 1 24 0 3 1708 1050 288 107 52 chr1 147238201 147238487 -49956945 + MT2A LTR ERVL 1 298 -235 3 1708 1479 32 0 5 chr1 147238487 147238675 -49956757 + L1Md_F2 LINE L1 6396 6582 0 3 1708 1050 268 71 9 chr1 147238675 147238843 -49956589 + MT2A LTR ERVL 299 550 -34 3 1708 21 0 0 0 chr1 147238859 147238880 -49956552 + AT_rich Low_complexity Low_complexity 1 21 0 3 1708 344 201 47 35 chr1 147238907 147239077 -49956355 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 3 1708 346 159 77 35 chr1 147239108 147239341 -49956091 + (TA)n Simple_repeat Simple_repeat 1 242 0 3 1708 787 222 16 37 chr1 147239375 147239562 -49955870 - URR1A DNA MER1_type 0 226 44 3 1708 21 36 0 0 chr1 147240134 147240162 -49955270 + AT_rich Low_complexity Low_complexity 1 28 0 3 1708 1065 97 0 12 chr1 147240881 147241048 -49954384 - L1Md_F2 LINE L1 -11 6571 6407 3 1708 1518 247 19 6 chr1 147241711 147242069 -49953363 + Lx5 LINE L1 6708 7409 -51 3 1708 213 118 19 38 chr1 147242072 147242125 -49953307 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 3 1708 27 0 0 0 chr1 147242953 147242980 -49952452 + AT_rich Low_complexity Low_complexity 1 27 0 3 1708 34 55 0 0 chr1 147244212 147244267 -49951165 + AT_rich Low_complexity Low_complexity 1 55 0 3 1708 4681 111 9 1 chr1 147244633 147245319 -49950113 + Lx LINE L1 5892 6582 -72 3 1708 307 196 71 177 chr1 147245525 147245791 -49949641 + Lx9 LINE L1 7401 7638 -6 3 1708 4273 196 57 15 chr1 147245895 147246542 -49948890 - Lx2B LINE L1 -4 6996 6332 3 1708 3164 58 2 0 chr1 147246542 147246937 -49948495 - MTA_Mm LTR MaLR 0 396 1 3 1708 4273 196 57 15 chr1 147246937 147247174 -49948258 - Lx2B LINE L1 -669 6331 6075 3 1708 1550 61 9 9 chr1 147247254 147247470 -49947962 + L1Md_F2 LINE L1 6367 6582 0 3 1708 21 71 0 0 chr1 147247867 147247909 -49947523 + AT_rich Low_complexity Low_complexity 1 42 0 3 1708 243 271 0 34 chr1 147247964 147248052 -49947380 + CT-rich Low_complexity Low_complexity 2 86 0 3 1708 21 57 0 0 chr1 147248228 147248263 -49947169 + AT_rich Low_complexity Low_complexity 1 35 0 3 1708 3200 187 65 45 chr1 147248932 147249643 -49945789 - Lx3C LINE L1 -2 6974 6250 3 1708 5526 151 0 6 chr1 147249643 147250625 -49944807 + L1_Mur2 LINE L1 3833 4808 -1069 3 1708 387 0 0 0 chr1 147250714 147250757 -49944675 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1708 1119 82 0 0 chr1 147250760 147250907 -49944525 - B1_Mm SINE Alu 0 147 1 3 1708 17975 65 6 3 chr1 147251745 147254821 -49940611 - L1Md_F2 LINE L1 0 6582 3499 3 1708 7104 91 0 1 chr1 147254818 147255815 -49939617 + L1Md_F2 LINE L1 2529 3524 -2359 3 1708 280 250 83 0 chr1 147256465 147256537 -49938895 - MERVL_2A-int LTR ERVL -3168 2593 2516 3 1708 278 376 22 8 chr1 147257014 147257148 -49938284 + L3 LINE CR1 3561 3696 -793 3 1708 308 307 0 54 chr1 147257508 147257601 -49937831 - RSINE1 SINE B4 -36 129 42 3 1708 1698 238 54 10 chr1 147257615 147258001 -49937431 - MTC LTR MaLR -11 410 8 3 1708 316 21 20 40 chr1 147258169 147258219 -49937213 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 3 1708 363 70 27 14 chr1 147258598 147258671 -49936761 + (TTTTG)n Simple_repeat Simple_repeat 3 76 0 3 1708 7461 63 9 2 chr1 147258707 147259919 -49935513 - L1Md_F2 LINE L1 -13 6569 5346 3 1708 219 36 0 0 chr1 147260517 147260545 -49934887 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 3 1708 453 352 128 15 chr1 147260739 147261129 -49934303 - Lx8 LINE L1 -361 7112 6679 3 1708 294 312 119 50 chr1 147261129 147261449 -49933983 + MER20B DNA MER1_type 282 623 -160 3 1708 24 0 0 0 chr1 147261523 147261547 -49933885 + AT_rich Low_complexity Low_complexity 1 24 0 3 1708 698 184 38 50 chr1 147262169 147262329 -49933103 + RLTR25A LTR ERVK 946 1103 0 3 1708 746 117 0 8 chr1 147262390 147262511 -49932921 + (TTC)n Simple_repeat Simple_repeat 2 121 0 3 1708 22 0 0 0 chr1 147262680 147262702 -49932730 + AT_rich Low_complexity Low_complexity 1 22 0 3 1708 835 96 37 0 chr1 147262895 147263030 -49932402 + L1Md_F2 LINE L1 6442 6581 -1 3 1708 7871 46 1 2 chr1 147263069 147264059 -49931373 - L1Md_T LINE L1 0 6582 5628 3 1708 1067 126 34 11 chr1 147264250 147264427 -49931005 - B2_Mm2 SINE B2 0 195 15 3 1708 766 200 52 35 chr1 147264484 147264727 -49930705 + RMER6A LTR ERVK 499 697 -59 3 1708 290 177 16 16 chr1 147264753 147264816 -49930616 + L1_Mus2 LINE L1 6354 6416 -150 3 1708 3839 59 2 0 chr1 147264789 147265282 -49930150 - L1_Mm LINE L1 -366 5517 5024 3 1708 909 116 0 0 chr1 147265280 147265409 -49930023 + L1_Mm LINE L1 5500 5628 -255 3 1708 1380 101 14 9 chr1 147265409 147265629 -49929803 + L1Md_F2 LINE L1 6360 6580 -2 3 1708 513 186 9 47 chr1 147265643 147265655 -49929777 + RMER6A LTR ERVK 614 625 -95 3 1708 7123 71 2 4 chr1 147265655 147266593 -49928839 + L1Md_F2 LINE L1 5645 6580 -2 3 1708 513 186 9 47 chr1 147266593 147266687 -49928745 + RMER6A LTR ERVK 626 716 -4 3 1708 32 0 0 0 chr1 147266696 147266728 -49928704 + AT_rich Low_complexity Low_complexity 1 32 0 3 1708 246 62 0 0 chr1 147267237 147267269 -49928163 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1708 588 311 47 40 chr1 147267304 147267605 -49927827 - Lx7 LINE L1 -358 7338 7036 3 1708 252 401 25 60 chr1 147269410 147269609 -49925823 + LTR40a LTR ERVL 148 339 -180 3 1708 1076 88 7 0 chr1 147270107 147270254 -49925178 - B1_Mus1 SINE Alu 0 148 1 3 1708 309 267 99 0 chr1 147270493 147270594 -49924838 - L1MCa LINE L1 -4689 1819 1709 3 1708 2359 50 3 39 chr1 147270603 147270935 -49924497 + L1Md_F3 LINE L1 6265 6584 0 3 1708 1597 278 28 0 chr1 147270954 147271353 -49924079 - MTD LTR MaLR 0 419 10 3 1708 1564 183 49 16 chr1 147271885 147272009 -49923423 - Lx2B LINE L1 0 7000 6867 3 1708 180 0 0 0 chr1 147272009 147272029 -49923403 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 3 1708 1564 183 49 16 chr1 147272029 147272209 -49923223 - Lx2B LINE L1 -134 6866 6687 3 1708 22 0 0 0 chr1 147273424 147273446 -49921986 + AT_rich Low_complexity Low_complexity 1 22 0 3 1708 6303 74 2 5 chr1 147274411 147275249 -49920183 - L1_Mm LINE L1 -84 5799 4964 3 1708 21 36 0 0 chr1 147276360 147276388 -49919044 + AT_rich Low_complexity Low_complexity 1 28 0 3 1708 504 264 6 1 chr1 147277072 147277241 -49918191 - L1_Rod LINE L1 -3401 2742 2570 3 1708 384 40 0 0 chr1 147278445 147278495 -49916937 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1708 294 216 32 57 chr1 147279137 147279260 -49916172 + CT-rich Low_complexity Low_complexity 3 122 0 3 1708 21 0 0 0 chr1 147279891 147279912 -49915520 + AT_rich Low_complexity Low_complexity 1 21 0 3 1708 26 30 0 0 chr1 147281109 147281142 -49914290 + AT_rich Low_complexity Low_complexity 1 33 0 3 1708 27 0 0 0 chr1 147281695 147281722 -49913710 + AT_rich Low_complexity Low_complexity 1 27 0 3 1708 257 347 0 0 chr1 147282917 147282989 -49912443 - ID2 SINE ID -3 80 9 3 1708 483 320 7 7 chr1 147283049 147283197 -49912235 + B1_Mur1 SINE Alu 1 148 -1 3 1708 493 361 8 0 chr1 147283604 147283737 -49911695 - RSINE1 SINE B4 -20 145 12 3 1708 1298 291 100 35 chr1 147284210 147285317 -49910115 + Lx8 LINE L1 5244 6415 -1058 3 1708 568 325 40 74 chr1 147285371 147285750 -49909682 + Lx8 LINE L1 6745 7110 -534 3 1708 235 265 61 105 chr1 147286768 147286882 -49908550 + MT2B LTR ERVL 132 240 -361 3 1708 393 291 48 0 chr1 147286840 147286943 -49908489 + B1F SINE Alu 42 149 0 3 1708 984 46 0 0 chr1 147286945 147287075 -49908357 + (GA)n Simple_repeat Simple_repeat 1 130 0 3 1708 1354 223 45 32 chr1 147287390 147288089 -49907343 + L1_Mur2 LINE L1 932 1593 -4284 3 1708 2701 186 71 14 chr1 147288157 147288820 -49906612 - L1_Mur3 LINE L1 -769 5111 4411 3 1708 2784 216 34 24 chr1 147288798 147289563 -49905869 - L1_Mur3 LINE L1 -3229 2651 1771 3 1708 3096 48 22 5 chr1 147289563 147289963 -49905469 - L1Md_F2 LINE L1 -11 6571 6165 3 1708 3592 269 76 9 chr1 147289963 147291290 -49904142 - L1_Mur3 LINE L1 -4107 1770 301 3 1708 35974 46 35 8 chr1 147291592 147297609 -49897823 - L1Md_A LINE L1 0 6582 398 4 1708 5072 41 2 0 chr1 147297771 147298378 -49897054 - L1Md_T LINE L1 -13 6569 5962 4 1708 2394 28 0 0 chr1 147298397 147298683 -49896749 + L1Md_T LINE L1 5678 5963 -619 4 1708 381 224 66 15 chr1 147299294 147299430 -49896002 + Lx7 LINE L1 7418 7560 -136 4 1708 281 346 19 0 chr1 147299514 147299621 -49895811 + Lx7 LINE L1 7200 7308 -388 4 1708 200 235 14 14 chr1 147299665 147299734 -49895698 + T-rich Low_complexity Low_complexity 3 71 0 4 1708 21 57 0 0 chr1 147299875 147299910 -49895522 + AT_rich Low_complexity Low_complexity 1 35 0 4 1708 3760 174 67 23 chr1 147300157 147300473 -49894959 + RMER17D2 LTR ERVK 1 309 -500 4 1708 815 53 38 8 chr1 147300473 147300606 -49894826 + (TCTCC)n Simple_repeat Simple_repeat 3 139 0 4 1708 3760 174 67 23 chr1 147300606 147301064 -49894368 + RMER17D2 LTR ERVK 310 808 -1 4 1708 432 193 17 8 chr1 147301198 147301318 -49894114 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1708 21 0 0 0 chr1 147301844 147301865 -49893567 + AT_rich Low_complexity Low_complexity 1 21 0 4 1708 862 251 165 10 chr1 147302223 147302629 -49892803 + Lx7 LINE L1 7210 7678 -18 4 1708 27 49 0 0 chr1 147302661 147302702 -49892730 + AT_rich Low_complexity Low_complexity 1 41 0 4 1708 356 374 24 24 chr1 147303164 147303331 -49892101 - B3 SINE B2 -48 168 2 4 1708 3010 66 5 10 chr1 147303669 147304067 -49891365 - MTA_Mm LTR MaLR 0 396 1 4 1708 40 0 0 0 chr1 147304371 147304411 -49891021 + AT_rich Low_complexity Low_complexity 1 40 0 4 1708 430 259 77 77 chr1 147304480 147304577 -49890855 - RLTR20C LTR ERVK 0 578 477 4 1708 351 0 0 0 chr1 147304577 147304616 -49890816 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1708 430 259 77 77 chr1 147304616 147304673 -49890759 - RLTR20C LTR ERVK -102 476 424 4 1708 461 259 23 107 chr1 147304672 147304888 -49890544 - RLTR20C LTR ERVK -222 312 115 4 1708 2181 146 50 14 chr1 147304907 147305351 -49890081 - MYSERV16_I-int LTR ERVK -808 1518 1059 4 1708 2084 196 64 64 chr1 147305353 147305888 -49889544 - MYSERV16_I-int LTR ERVK -1402 924 390 4 1708 531 258 37 79 chr1 147305939 147306138 -49889294 + Lx9 LINE L1 7309 7494 -150 4 1708 3401 54 2 2 chr1 147306138 147306566 -49888866 - L1Md_F2 LINE L1 -14 6568 6141 4 1708 450 114 0 0 chr1 147306567 147306646 -49888786 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1708 531 258 37 79 chr1 147306646 147306772 -49888660 + Lx9 LINE L1 7495 7622 -22 4 1708 24 0 0 0 chr1 147308211 147308235 -49887197 + AT_rich Low_complexity Low_complexity 1 24 0 4 1708 318 346 79 56 chr1 147308325 147308539 -49886893 - MLT1A0 LTR MaLR -74 291 73 4 1708 1378 273 20 27 chr1 147308657 147309097 -49886335 + Lx7 LINE L1 6931 7367 -329 4 1708 41 0 0 0 chr1 147309098 147309139 -49886293 + AT_rich Low_complexity Low_complexity 1 41 0 4 1708 335 223 56 37 chr1 147309196 147309303 -49886129 + Lx7 LINE L1 7380 7488 -208 4 1708 7085 89 34 5 chr1 147309310 147310341 -49885091 - L1_Mus4 LINE L1 -10 6626 5587 4 1708 555 242 50 11 chr1 147310338 147310518 -49884914 + Lx7 LINE L1 7460 7646 -50 4 1708 1924 146 35 3 chr1 147310518 147310828 -49884604 - ORR1A2 LTR MaLR 0 327 8 4 1708 9352 175 53 19 chr1 147310834 147311770 -49883662 - ORR1A2-int LTR MaLR 0 1963 1034 4 1708 2368 85 32 14 chr1 147311770 147312115 -49883317 - L1Md_F2 LINE L1 -12 6570 6220 4 1708 9352 175 53 19 chr1 147312115 147313072 -49882360 - ORR1A2-int LTR MaLR -930 1033 7 4 1708 1796 164 6 62 chr1 147313080 147313418 -49882014 - ORR1A2 LTR MaLR -8 319 1 4 1708 360 270 78 16 chr1 147313673 147313801 -49881631 - Lx8 LINE L1 -1007 6466 6331 4 1708 803 137 122 0 chr1 147314064 147314195 -49881237 + B1_Mus1 SINE Alu 2 148 0 4 1708 8399 149 45 4 chr1 147314624 147316358 -49879074 - Lx4A LINE L1 -6 7052 5267 4 1708 303 28 0 0 chr1 147317003 147317039 -49878393 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1708 37957 30 0 0 chr1 147317048 147323299 -49872133 - L1Md_T LINE L1 -12 6573 226 4 1708 507 266 58 15 chr1 147323517 147323723 -49871709 - Lx6 LINE L1 0 7460 7246 4 1708 243 0 0 0 chr1 147323724 147323751 -49871681 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1708 262 342 0 8 chr1 147323757 147323878 -49871554 - Lx6 LINE L1 -378 7082 6963 4 1708 216 182 0 0 chr1 147323878 147323922 -49871510 + CT-rich Low_complexity Low_complexity 3 46 0 4 1708 386 254 209 32 chr1 147323922 147324109 -49871323 - Lx6 LINE L1 -435 7025 6806 4 1708 928 230 33 4 chr1 147324102 147324509 -49870923 - Lx6 LINE L1 -1750 5710 5389 4 213 3620 176 44 123 chr1 147324579 147325504 -49869928 - Lx2B LINE L1 -19 6981 6130 4 1709 2981 213 40 31 chr1 147325503 147326313 -49869119 - Lx6 LINE L1 -2660 3220 2404 4 1709 320 226 10 61 chr1 147326309 147326408 -49869024 - Lx5 LINE L1 -422 6628 6535 4 1709 30 0 0 0 chr1 147327053 147327083 -49868349 + AT_rich Low_complexity Low_complexity 1 30 0 4 1709 2781 80 0 5 chr1 147328355 147328730 -49866702 - L1Md_F2 LINE L1 -2 6580 6208 4 1709 798 189 0 0 chr1 147329756 147329904 -49865528 - Lx2A1 LINE L1 -192 5691 5544 4 1709 8285 128 21 6 chr1 147329902 147331212 -49864220 + Lx2A1 LINE L1 5678 7006 -2 4 1709 1274 217 21 7 chr1 147331844 147332123 -49863309 + L1_Mur1 LINE L1 44 326 -6656 4 1709 2047 111 19 0 chr1 147332116 147332423 -49863009 - L1_Mur1 LINE L1 -5890 1092 780 4 1709 5085 127 16 14 chr1 147332427 147333241 -49862191 + Lx3A LINE L1 6163 6978 -3 4 1709 24 32 0 0 chr1 147333242 147333273 -49862159 + AT_rich Low_complexity Low_complexity 1 31 0 4 1709 213 216 0 0 chr1 147334074 147334111 -49861321 + (CCTA)n Simple_repeat Simple_repeat 1 37 0 4 1709 233 57 0 28 chr1 147334246 147334282 -49861150 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1709 294 98 0 0 chr1 147334733 147334784 -49860648 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1709 889 304 29 19 chr1 147335012 147335390 -49860042 - L1MC3 LINE L1 -13 7772 7391 4 1709 373 325 96 64 chr1 147335440 147335690 -49859742 - MER76 LTR ERVL 0 691 434 4 1709 1443 255 62 62 chr1 147335755 147336299 -49859133 - RLTR20B3 LTR ERVK -13 564 21 4 1709 317 294 70 30 chr1 147336699 147336997 -49858435 - L1MC3 LINE L1 -561 7224 6915 4 1709 32939 77 20 6 chr1 147337430 147342427 -49853005 - L1Md_F2 LINE L1 -1 6581 1503 4 1709 3153 46 13 0 chr1 147342427 147342818 -49852614 - MTA_Mm LTR MaLR 0 396 1 4 1709 32939 141 16 22 chr1 147342818 147343882 -49851550 - L1Md_F2 LINE L1 -4381 1502 457 4 1709 284 275 76 6 chr1 147345276 147345448 -49849984 + Lx9 LINE L1 7311 7494 -150 4 1709 2103 245 99 57 chr1 147345561 147346345 -49849087 - RLTR40 LTR ERVK 0 817 1 4 1709 25 90 0 0 chr1 147346433 147346500 -49848932 + AT_rich Low_complexity Low_complexity 1 67 0 4 1709 1346 87 49 0 chr1 147346510 147346694 -49848738 + B2_Mm2 SINE B2 1 193 -2 4 1709 230 73 24 0 chr1 147347379 147347420 -49848012 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1709 25 83 0 0 chr1 147347785 147347845 -49847587 + AT_rich Low_complexity Low_complexity 1 60 0 4 1709 543 31 0 0 chr1 147348543 147348608 -49846824 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1709 207 0 0 0 chr1 147348608 147348631 -49846801 + (CCA)n Simple_repeat Simple_repeat 1 23 0 4 1709 21 71 0 0 chr1 147349269 147349311 -49846121 + AT_rich Low_complexity Low_complexity 1 42 0 4 1709 252 266 62 39 chr1 147349493 147349622 -49845810 + L1_Mur1 LINE L1 4310 4441 -1445 4 1709 535 274 81 40 chr1 147349785 147350050 -49845382 + L1_Mur3 LINE L1 4705 4947 -933 4 1709 282 333 24 24 chr1 147350051 147350177 -49845255 - MT2A LTR ERVL -407 126 1 4 1709 1667 215 39 13 chr1 147350307 147350689 -49844743 + ORR1B1 LTR MaLR 1 392 -2 4 1709 1448 329 86 23 chr1 147350693 147351533 -49843899 + Lx8 LINE L1 6344 7236 -237 4 1709 256 208 42 0 chr1 147353100 147353172 -49842260 - L1MA9 LINE L1 -173 6139 6065 4 1709 484 173 79 7 chr1 147353618 147353758 -49841674 - Lx9 LINE L1 -8 7636 7487 4 1709 627 233 21 58 chr1 147353780 147353971 -49841461 + Lx9 LINE L1 6966 7149 -495 4 1709 4528 101 5 0 chr1 147354443 147355085 -49840347 + L1_Mm LINE L1 4937 5581 -302 4 1709 210 37 0 0 chr1 147356196 147356223 -49839209 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1709 291 313 28 86 chr1 147356432 147356687 -49838745 - L1_Mur1 LINE L1 -6665 317 78 4 1709 2607 160 87 0 chr1 147356720 147357225 -49838207 + Lx3B LINE L1 6425 6973 0 4 1709 24 32 0 0 chr1 147357238 147357269 -49838163 + AT_rich Low_complexity Low_complexity 1 31 0 4 1709 708 237 35 12 chr1 147357278 147357449 -49837983 - URR1A DNA MER1_type -51 175 1 4 1709 349 294 11 96 chr1 147357449 147357476 -49837956 + CYRA11_Mm Unknown Y-chromosome 397 408 -209 4 1709 614 240 57 6 chr1 147357671 147357847 -49837585 + Lx6 LINE L1 4332 4516 -1364 4 1709 670 224 61 0 chr1 147357856 147358003 -49837429 + RLTR40 LTR ERVK 649 804 -13 4 1709 338 247 104 0 chr1 147358011 147358139 -49837293 + Lx6 LINE L1 4767 4918 -968 4 1709 285 51 0 0 chr1 147358163 147358202 -49837230 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1709 648 133 0 0 chr1 147358202 147358300 -49837132 - B1_Mus2 SINE Alu -3 144 47 4 1709 1357 76 15 5 chr1 147358287 147358486 -49836946 - BGLII LTR ERVK -219 202 2 4 1709 2902 240 35 29 chr1 147359817 147360687 -49834745 + Lx6 LINE L1 5466 6345 -1115 4 1709 420 230 130 22 chr1 147360698 147360836 -49834596 + Lx3B LINE L1 6816 6968 -5 4 1709 27 0 0 0 chr1 147360845 147360872 -49834560 + AT_rich Low_complexity Low_complexity 1 27 0 4 1709 1235 196 65 75 chr1 147360912 147361220 -49834212 - RMER6D LTR ERVK -412 308 4 4 1709 275 0 29 0 chr1 147361256 147361291 -49834141 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 4 1709 25 75 0 0 chr1 147363060 147363113 -49832319 + AT_rich Low_complexity Low_complexity 1 53 0 4 1709 312 315 88 62 chr1 147363227 147363420 -49832012 + MLT2D LTR ERVL 3 200 -214 4 1709 867 249 18 9 chr1 147363482 147363701 -49831731 - URR1B DNA MER1_type 0 225 5 4 1709 32 81 0 0 chr1 147363806 147363880 -49831552 + AT_rich Low_complexity Low_complexity 1 74 0 4 1709 769 331 73 62 chr1 147363888 147364113 -49831319 + MTD LTR MaLR 18 235 -184 4 1709 3227 51 2 0 chr1 147364113 147364508 -49830924 + MTA_Mm LTR MaLR 1 396 0 4 1709 769 331 73 62 chr1 147364508 147364636 -49830796 + MTD LTR MaLR 236 375 -44 4 1709 269 213 0 0 chr1 147364741 147364788 -49830644 + Lx9 LINE L1 6835 6881 -763 4 1709 259 159 87 56 chr1 147364799 147364904 -49830528 + ORR1E LTR MaLR 270 404 -15 4 1709 364 270 0 43 chr1 147365315 147365408 -49830024 + RLTR23 LTR ERV1 6 94 -336 4 1709 1947 260 153 4 chr1 147365704 147366255 -49829177 + Lx7 LINE L1 6374 7006 -690 4 1709 833 109 14 21 chr1 147366352 147366493 -49828939 + RLTR41 LTR ERV1 307 446 0 4 1709 636 305 89 18 chr1 147367776 147368167 -49827265 + MuRRS4-int LTR ERV1 1307 1725 -3338 4 1709 23 33 0 0 chr1 147368305 147368335 -49827097 + GC_rich Low_complexity Low_complexity 1 30 0 4 1709 292 311 15 14 chr1 147368375 147368538 -49826894 + MuRRS4-int LTR ERV1 2455 2588 -2102 4 1709 2160 314 92 41 chr1 147368621 147370686 -49824746 + MuRRS4-int LTR ERV1 2302 5524 -2032 4 1709 460 314 38 21 chr1 147371087 147371359 -49824073 + MuRRS4-int LTR ERV1 4663 4889 -174 5 1709 1426 212 99 63 chr1 147371446 147371808 -49823624 + RLTR41 LTR ERV1 1 375 -71 5 1709 213 39 0 0 chr1 147371815 147371841 -49823591 + (GAA)n Simple_repeat Simple_repeat 2 27 0 5 1709 227 235 12 36 chr1 147371885 147371969 -49823463 + CT-rich Low_complexity Low_complexity 4 85 0 5 1709 1068 206 80 17 chr1 147371984 147372221 -49823211 - RMER13A LTR ERVK -608 252 1 5 1709 581 318 47 5 chr1 147372221 147372433 -49822999 + Lx7 LINE L1 7054 7274 -422 4 1709 354 284 21 0 chr1 147373065 147373160 -49822272 + B1_Mur2 SINE Alu 48 144 -5 5 1709 606 214 15 8 chr1 147373844 147373976 -49821456 - Lx9 LINE L1 -917 6727 6595 5 1709 1529 261 62 31 chr1 147373975 147374461 -49820971 + Lx9 LINE L1 6766 7266 -378 5 1709 2482 42 6 231 chr1 147374467 147374968 -49820464 + RLTR10 LTR ERVK 1 388 -2 5 1709 4213 42 1 2 chr1 147374980 147375866 -49819566 + RLTR10-int LTR ERVK 41 998 -989 5 1709 360 246 54 31 chr1 147375930 147376060 -49819372 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1709 8810 21 0 1 chr1 147376141 147377140 -49818292 + RLTR10-int LTR ERVK 990 1987 0 5 1709 2482 42 6 231 chr1 147377140 147377641 -49817791 + RLTR10 LTR ERVK 1 388 -2 5 1709 4200 43 1 2 chr1 147377653 147378539 -49816893 + RLTR10-int LTR ERVK 41 998 -989 5 1709 360 246 54 31 chr1 147378603 147378733 -49816699 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1709 8810 21 0 1 chr1 147378814 147379813 -49815619 + RLTR10-int LTR ERVK 990 1987 0 5 1709 2482 42 6 231 chr1 147379813 147380314 -49815118 + RLTR10 LTR ERVK 1 388 -2 5 1709 4200 43 1 2 chr1 147380326 147381212 -49814220 + RLTR10-int LTR ERVK 41 998 -989 5 1709 360 246 54 31 chr1 147381276 147381406 -49814026 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1709 8810 21 0 1 chr1 147381487 147382486 -49812946 + RLTR10-int LTR ERVK 990 1987 0 5 1709 2292 44 6 231 chr1 147382486 147382987 -49812445 + RLTR10 LTR ERVK 1 388 -2 5 1709 285 98 0 0 chr1 147383095 147383136 -49812296 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1709 410 264 22 11 chr1 147383346 147383438 -49811994 - PB1D9 SINE Alu -27 93 1 5 1709 1375 219 43 93 chr1 147383809 147384207 -49811225 - ORR1C1 LTR MaLR 0 378 1 5 1709 247 217 87 0 chr1 147384207 147384247 -49811185 - ORR1C1-int LTR MaLR 0 1509 1465 5 1709 260 53 26 0 chr1 147384247 147384285 -49811147 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1709 247 217 87 0 chr1 147384285 147384313 -49811119 - ORR1C1-int LTR MaLR -45 1464 1436 5 1709 351 0 0 0 chr1 147384437 147384476 -49810956 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1709 580 136 13 29 chr1 147384476 147384598 -49810834 - B1_Mm SINE Alu 0 147 1 5 1709 655 290 68 40 chr1 147384631 147384879 -49810553 - Lx8 LINE L1 -103 7370 7116 5 1709 1000 158 22 6 chr1 147384890 147385068 -49810364 - B2_Mm2 SINE B2 -14 181 1 5 1709 606 118 0 0 chr1 147385137 147385230 -49810202 + (TA)n Simple_repeat Simple_repeat 1 93 0 5 1709 22 56 0 0 chr1 147388053 147388089 -49807343 + AT_rich Low_complexity Low_complexity 1 36 0 5 1709 23 33 0 0 chr1 147388127 147388157 -49807275 + AT_rich Low_complexity Low_complexity 1 30 0 5 1709 25 31 0 0 chr1 147389612 147389644 -49805788 + AT_rich Low_complexity Low_complexity 1 32 0 5 1709 742 68 256 0 chr1 147389811 147389928 -49805504 + B1_Mus2 SINE Alu 1 147 0 5 1709 379 349 12 18 chr1 147391162 147391331 -49804101 - Lx8 LINE L1 -354 7119 6952 5 1709 1423 276 133 12 chr1 147391377 147392172 -49803260 + L1_Mur3 LINE L1 17 726 -7002 5 1709 1679 222 177 4 chr1 147392172 147392670 -49802762 + RLTR31A_Mm LTR ERVK 1 584 0 5 1709 1035 285 121 68 chr1 147392670 147392870 -49802562 + L1_Mur3 LINE L1 430 635 -7093 5 1709 323 82 0 0 chr1 147392894 147392943 -49802489 - L1_Mur3 LINE L1 -4317 1563 1515 5 1709 365 211 8 38 chr1 147392939 147393068 -49802364 + L1_Mur3 LINE L1 1611 1733 -4144 5 1709 231 394 22 22 chr1 147393054 147393189 -49802243 - Lx8 LINE L1 -853 6620 6486 5 1709 977 127 12 35 chr1 147393484 147393497 -49801935 - B2_Mm2 SINE B2 -28 167 158 5 1709 216 0 0 0 chr1 147393497 147393521 -49801911 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 5 1709 977 127 12 35 chr1 147393521 147393678 -49801754 - B2_Mm2 SINE B2 -38 157 1 5 1709 7932 166 52 12 chr1 147393717 147396096 -49799336 - Lx4A LINE L1 0 7058 4588 5 1709 477 0 0 0 chr1 147396096 147396149 -49799283 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1709 225 0 0 0 chr1 147396150 147396175 -49799257 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1709 7334 173 62 8 chr1 147396175 147396372 -49799060 - Lx4A LINE L1 -1290 4587 4384 5 1709 206 135 36 55 chr1 147396761 147396816 -49798616 + T-rich Low_complexity Low_complexity 1 54 0 5 1709 583 178 82 44 chr1 147396859 147396994 -49798438 + B1_Mus2 SINE Alu 5 144 -3 5 1709 444 347 35 0 chr1 147397021 147397194 -49798238 + Lx8 LINE L1 6799 6977 -496 5 1709 193 128 0 41 chr1 147398183 147398232 -49797200 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1709 423 0 0 0 chr1 147399879 147399926 -49795506 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1709 209 219 0 15 chr1 147400180 147400245 -49795187 + (TTAAA)n Simple_repeat Simple_repeat 1 64 0 5 1709 563 294 41 12 chr1 147400265 147400437 -49794995 - Lx6 LINE L1 -31 7429 7253 5 1709 4957 2 0 0 chr1 147400511 147401059 -49794373 - L1Md_A LINE L1 0 6582 6035 5 1709 1856 126 28 87 chr1 147401131 147401522 -49793910 - RLTR9A LTR ERVK 0 368 1 5 1709 30 27 0 0 chr1 147401575 147401612 -49793820 + AT_rich Low_complexity Low_complexity 1 37 0 5 1709 37 52 0 0 chr1 147401753 147401811 -49793621 + AT_rich Low_complexity Low_complexity 1 58 0 5 1709 216 97 0 0 chr1 147401927 147401958 -49793474 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1709 315 246 68 34 chr1 147401966 147402084 -49793348 - B3A SINE B2 -74 124 3 5 1709 230 350 96 118 chr1 147402139 147402275 -49793157 - B3A SINE B2 -30 168 36 5 1709 2481 119 10 17 chr1 147402276 147402693 -49792739 + Lx LINE L1 6240 6653 -1 5 1709 477 40 13 26 chr1 147402695 147402773 -49792659 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 5 1709 183 271 62 0 chr1 147404053 147404101 -49791331 - L4 LINE RTE -302 1727 1677 5 1709 330 26 0 0 chr1 147404374 147404413 -49791019 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1709 4245 201 52 58 chr1 147404631 147404797 -49790635 + RLTR25B LTR ERVK 1 165 -863 5 1709 1068 48 20 27 chr1 147404797 147404946 -49790486 + B1_Mus1 SINE Alu 1 148 0 5 1709 4245 201 52 58 chr1 147404946 147405813 -49789619 + RLTR25B LTR ERVK 166 1028 0 5 1709 618 294 64 41 chr1 147405852 147406220 -49789212 + Lx7 LINE L1 5410 5770 -542 5 1709 273 304 56 34 chr1 147406312 147406528 -49788904 + MTEb LTR MaLR 148 375 -4 5 1709 472 99 37 0 chr1 147407674 147407755 -49787677 + L1Md_F2 LINE L1 6499 6582 0 5 1709 311 290 179 0 chr1 147407827 147408051 -49787381 - L1M5 LINE L1 -535 5644 5381 5 1709 1073 208 194 22 chr1 147408505 147408933 -49786499 - Lx4B LINE L1 -17 7033 6499 5 1709 4407 40 2 0 chr1 147408933 147409461 -49785971 + L1Md_T LINE L1 6054 6582 0 5 1709 1073 176 140 25 chr1 147409461 147409500 -49785932 - Lx4B LINE L1 -536 6522 6476 5 1709 287 242 10 21 chr1 147409611 147409708 -49785724 + L1M2 LINE L1 4563 4658 -1485 5 1709 374 316 37 14 chr1 147409806 147410024 -49785408 + L1M2 LINE L1 4619 4841 -1302 5 1709 414 0 0 0 chr1 147410165 147410211 -49785221 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1709 222 91 0 0 chr1 147410336 147410369 -49785063 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 5 1709 2472 67 3 0 chr1 147410552 147410880 -49784552 + L1Md_F2 LINE L1 6253 6581 -1 5 1709 285 231 21 62 chr1 147410976 147411073 -49784359 - RCHARR1 DNA MER1_type -185 789 697 5 1709 355 302 74 80 chr1 147411152 147411328 -49784104 - RCHARR1 DNA MER1_type -799 175 1 5 1709 32 43 0 0 chr1 147411545 147411591 -49783841 + AT_rich Low_complexity Low_complexity 1 46 0 5 1709 24 0 0 0 chr1 147412647 147412671 -49782761 + AT_rich Low_complexity Low_complexity 1 24 0 5 1709 339 334 139 70 chr1 147414217 147414698 -49780734 - MLT1E3 LTR MaLR -29 598 80 5 1709 1038 39 0 0 chr1 147414918 147415045 -49780387 + (TCTA)n Simple_repeat Simple_repeat 3 129 0 5 1709 1176 130 16 0 chr1 147416240 147416424 -49779008 - B2_Mm2 SINE B2 -2 193 7 5 1709 282 132 0 0 chr1 147416777 147416830 -49778602 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1709 1125 75 0 0 chr1 147416840 147416986 -49778446 - B1_Mus1 SINE Alu -1 147 2 5 1709 186 133 0 0 chr1 147418029 147418059 -49777373 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1709 2089 36 0 0 chr1 147418082 147418332 -49777100 + L1Md_A LINE L1 6333 6582 0 5 1709 3478 161 61 3 chr1 147418352 147418992 -49776440 - L1_Mm LINE L1 -825 5058 4382 5 1709 6538 123 26 42 chr1 147418992 147419267 -49776165 + Lx LINE L1 5594 5867 -787 5 1709 221 0 35 0 chr1 147419267 147419296 -49776136 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5 1709 6538 123 26 42 chr1 147419296 147419948 -49775484 + Lx LINE L1 5868 6518 -136 5 1709 204 40 0 0 chr1 147419948 147419973 -49775459 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 1709 6538 123 26 42 chr1 147419973 147420116 -49775316 + Lx LINE L1 6519 6648 -6 5 1709 22 0 0 0 chr1 147420783 147420805 -49774627 + AT_rich Low_complexity Low_complexity 1 22 0 5 1709 24 0 0 0 chr1 147420951 147420975 -49774457 + AT_rich Low_complexity Low_complexity 1 24 0 5 1709 228 62 0 0 chr1 147421839 147421852 -49773580 + (TG)n Simple_repeat Simple_repeat 1 13 0 5 1709 405 0 0 0 chr1 147421852 147421897 -49773535 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1709 228 62 0 0 chr1 147421897 147421915 -49773517 + (TG)n Simple_repeat Simple_repeat 1 18 0 5 1709 531 321 44 94 chr1 147423108 147423311 -49772121 - B3A SINE B2 0 193 1 5 1709 5903 68 3 1 chr1 147423689 147424661 -49770771 - L1_Mus2 LINE L1 -234 6332 5360 5 1709 1342 99 45 0 chr1 147424667 147424868 -49770564 + L1_Mus2 LINE L1 6356 6565 -1 5 1709 564 174 0 0 chr1 147425078 147425199 -49770233 + CT-rich Low_complexity Low_complexity 2 122 0 5 1709 260 27 27 0 chr1 147425280 147425317 -49770115 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 5 1709 31 44 0 0 chr1 147425661 147425706 -49769726 + AT_rich Low_complexity Low_complexity 1 45 0 5 1709 376 213 16 0 chr1 147425829 147425956 -49769476 + GA-rich Low_complexity Low_complexity 2 130 0 5 1709 45 0 0 0 chr1 147426111 147426156 -49769276 + AT_rich Low_complexity Low_complexity 1 45 0 5 1709 353 206 10 0 chr1 147426416 147426513 -49768919 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 1709 1416 223 0 163 chr1 147426643 147427092 -49768340 - ORR1C1 LTR MaLR 0 378 3 5 1709 189 0 0 0 chr1 147427119 147427140 -49768292 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1709 474 345 25 15 chr1 147428162 147428362 -49767070 + MLT1C LTR MaLR 9 210 -257 5 1709 5092 144 98 20 chr1 147428847 147429225 -49766207 + MTA_Mm-int LTR MaLR 1 383 -875 5 1709 3812 80 0 0 chr1 147429225 147429728 -49765704 + L1Md_T LINE L1 6080 6582 0 5 1709 5092 144 98 20 chr1 147429728 147430385 -49765047 + MTA_Mm-int LTR MaLR 384 1117 -141 5 1709 8246 40 3 1 chr1 147430387 147431417 -49764015 - L1Md_F3 LINE L1 0 6584 5553 5 1709 873 82 80 14 chr1 147431417 147431598 -49763834 + MTA_Mm-int LTR MaLR 957 1258 0 5 1709 3089 59 21 3 chr1 147431598 147431987 -49763445 + MTA_Mm LTR MaLR 1 396 0 5 1709 401 155 0 9 chr1 147432043 147432154 -49763278 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1709 217 109 43 0 chr1 147432154 147432200 -49763232 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1709 180 0 0 0 chr1 147432201 147432221 -49763211 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1709 950 211 39 10 chr1 147432607 147432813 -49762619 + RMER20B LTR ERVK 3 214 -413 5 1709 246 143 0 0 chr1 147432814 147432863 -49762569 + (C)n Simple_repeat Simple_repeat 1 49 0 6 1709 1531 209 61 96 chr1 147432866 147433295 -49762137 + RMER20B LTR ERVK 214 627 0 5 1709 216 0 0 0 chr1 147433319 147433343 -49762089 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 6 1709 479 175 0 0 chr1 147433480 147433560 -49761872 - L1_Mur3 LINE L1 -616 5261 5182 6 1709 2130 121 98 32 chr1 147433563 147433963 -49761469 + Lx2 LINE L1 6571 6996 -1 6 1709 568 150 18 0 chr1 147434644 147434757 -49760675 + CT-rich Low_complexity Low_complexity 3 117 0 6 1709 627 306 109 48 chr1 147434770 147435165 -49760267 - RMER5 LTR ERV1 -67 467 49 6 1709 49 43 0 0 chr1 147435977 147436047 -49759385 + AT_rich Low_complexity Low_complexity 1 70 0 6 1709 186 167 0 0 chr1 147436047 147436083 -49759349 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 6 1709 1248 295 17 0 chr1 147436085 147436498 -49758934 - L1_Mur3 LINE L1 -675 5205 4786 6 1709 2481 17 3 0 chr1 147437072 147437359 -49758073 + L1Md_T LINE L1 5299 5586 -297 6 1709 8358 36 0 0 chr1 147437359 147438355 -49757077 + L1Md_T LINE L1 5587 6582 0 6 1709 34 65 0 0 chr1 147438494 147438556 -49756876 + AT_rich Low_complexity Low_complexity 1 62 0 6 1709 180 0 0 0 chr1 147438594 147438614 -49756818 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1709 19469 69 1 3 chr1 147438619 147441957 -49753475 - L1Md_F2 LINE L1 -14 6568 3239 6 1709 6413 79 1 1 chr1 147441952 147443249 -49752183 - L1Md_F2 LINE L1 -4174 1709 412 6 1709 238 330 33 50 chr1 147443252 147443373 -49752059 - MLT1G LTR MaLR -56 535 417 6 1709 203 147 0 0 chr1 147444075 147444109 -49751323 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1709 1012 97 14 20 chr1 147444614 147444761 -49750671 + B1_Mus2 SINE Alu 2 147 0 6 1709 25 51 0 0 chr1 147445792 147445831 -49749601 + AT_rich Low_complexity Low_complexity 1 39 0 6 1709 354 221 0 0 chr1 147446365 147446501 -49748931 + (CA)n Simple_repeat Simple_repeat 2 137 0 6 1709 785 114 0 0 chr1 147447800 147447914 -49747518 - B2_Mm2 SINE B2 -80 115 2 6 1709 788 160 122 24 chr1 147447969 147448153 -49747279 + Lx5 LINE L1 5764 5968 -1082 6 1709 2678 50 26 12 chr1 147448155 147448496 -49746936 - ORR1A1 LTR MaLR 0 346 1 6 1709 7511 63 1 6 chr1 147448497 147449501 -49745931 - ORR1A1-int LTR MaLR -1 1791 793 6 1709 7648 55 4 4 chr1 147449501 147450828 -49744604 - L1Md_F2 LINE L1 -12 6570 5244 6 1709 1489 77 0 0 chr1 147450831 147451026 -49744406 + L1Md_F2 LINE L1 5033 5227 -656 6 1709 5383 80 20 0 chr1 147451026 147451818 -49743614 - ORR1A1-int LTR MaLR -984 808 1 6 1709 2554 83 14 11 chr1 147451818 147452192 -49743240 - ORR1A1 LTR MaLR 0 374 1 6 1709 563 232 248 21 chr1 147452195 147452477 -49742955 + Lx5 LINE L1 6004 6368 -690 6 1709 1972 246 68 35 chr1 147452477 147452696 -49742736 + Lx5 LINE L1 6516 6743 -257 6 1709 639 0 0 0 chr1 147452696 147452767 -49742665 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1709 1036 67 0 15 chr1 147452769 147452905 -49742527 - B1_Mm SINE Alu -13 134 1 6 1709 1972 244 57 30 chr1 147452905 147453208 -49742224 + Lx5 LINE L1 6728 7047 -3 6 1709 537 196 28 0 chr1 147453253 147453360 -49742072 - B1_Mus1 SINE Alu 0 148 39 6 1709 670 287 91 26 chr1 147453507 147453772 -49741660 - MER2 DNA MER2_type -25 320 39 6 1709 21 0 0 0 chr1 147454047 147454068 -49741364 + AT_rich Low_complexity Low_complexity 1 21 0 6 1709 836 325 14 17 chr1 147454342 147454636 -49740796 + Arthur1C DNA Tip100 2 294 -69 6 1709 576 170 12 23 chr1 147455542 147455811 -49739621 + (TA)n Simple_repeat Simple_repeat 1 265 0 6 1710 373 253 16 8 chr1 147456106 147456266 -49739166 - L1PB4 LINE L1 -363 5934 5762 6 1710 371 299 69 16 chr1 147456605 147456908 -49738524 - L1PB4 LINE L1 -861 5282 4964 6 1710 443 169 24 8 chr1 147457852 147457977 -49737455 + GA-rich Low_complexity Low_complexity 3 129 0 6 1710 6707 98 16 13 chr1 147459066 147460379 -49735053 + Lx3A LINE L1 4989 6288 -693 6 1710 5312 142 69 7 chr1 147460379 147461278 -49734154 + RMER17B LTR ERVK 1 955 -3 6 1710 6707 105 15 34 chr1 147461278 147461614 -49733818 + Lx3A LINE L1 6289 6621 -360 6 1710 1014 321 63 16 chr1 147461643 147462023 -49733409 - Lx8 LINE L1 -855 6618 6221 6 1710 24 32 0 0 chr1 147462040 147462071 -49733361 + AT_rich Low_complexity Low_complexity 1 31 0 6 1710 1035 292 76 38 chr1 147462214 147462253 -49733179 + Lx6 LINE L1 6966 7006 -454 6 1710 2241 212 27 11 chr1 147462253 147462773 -49732659 - RLTR11A LTR ERVK 0 528 1 6 1710 1035 292 76 38 chr1 147462773 147463181 -49732251 + Lx6 LINE L1 7007 7429 -31 6 1710 2603 207 51 28 chr1 147463181 147463793 -49731639 - RMER6C LTR ERVK 0 690 65 6 1710 615 185 28 0 chr1 147463809 147463917 -49731515 + (TCTCTG)n Simple_repeat Simple_repeat 6 116 0 6 1710 287 257 19 19 chr1 147464042 147464145 -49731287 - Lx8 LINE L1 -1588 5885 5783 6 1710 576 0 0 0 chr1 147465104 147465168 -49730264 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1710 1924 176 76 2 chr1 147465756 147466178 -49729254 - L1_Mur1 LINE L1 -2482 3404 2952 6 1710 3117 238 31 14 chr1 147466184 147467072 -49728360 + Lx4B LINE L1 6103 7000 0 6 1710 245 255 64 0 chr1 147467083 147467177 -49728255 - L1M2 LINE L1 -3279 2864 2765 6 1710 307 354 71 67 chr1 147468045 147468538 -49726894 - L1M2 LINE L1 -3516 2627 2133 6 1710 243 0 0 0 chr1 147468669 147468696 -49726736 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1710 1097 51 0 0 chr1 147468696 147468834 -49726598 - B1_Mus2 SINE Alu -9 138 1 6 1710 2432 189 32 32 chr1 147468945 147469469 -49725963 - RLTR11A2 LTR ERVK -3 524 1 6 1710 31 88 0 0 chr1 147469474 147469554 -49725878 + AT_rich Low_complexity Low_complexity 1 80 0 6 1710 306 0 0 0 chr1 147469850 147469884 -49725548 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1710 592 194 29 52 chr1 147469888 147470024 -49725408 - B1_Mur4 SINE Alu -15 135 3 6 1710 8402 99 31 7 chr1 147470874 147471943 -49723489 - Lx3_Mus LINE L1 -1 7008 5909 6 1710 258 32 0 0 chr1 147471943 147471974 -49723458 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1710 8402 99 31 7 chr1 147471974 147472155 -49723277 - Lx3_Mus LINE L1 -1101 5908 5729 6 1710 799 60 0 19 chr1 147472147 147472250 -49723182 + Lx3_Mus LINE L1 5657 5757 -1252 6 1710 218 366 104 22 chr1 147473106 147473240 -49722192 - B1_Mm SINE Alu -1 146 2 6 1710 32 26 0 0 chr1 147473280 147473319 -49722113 + AT_rich Low_complexity Low_complexity 1 39 0 6 1710 2703 146 45 2 chr1 147473507 147473952 -49721480 - Lx4A LINE L1 -3 7055 6592 6 1710 4169 189 20 48 chr1 147473955 147474066 -49721366 - Lx4B LINE L1 -375 6683 6606 6 1710 1891 125 3 42 chr1 147474066 147474401 -49721031 + Lx LINE L1 6333 6654 0 6 1710 4613 155 18 5 chr1 147474401 147475168 -49720264 - Lx4A LINE L1 -453 6605 5829 6 1710 2114 118 141 14 chr1 147475721 147476082 -49719350 + RLTR9E LTR ERVK 3 409 0 6 1710 1074 88 31 6 chr1 147477176 147477337 -49718095 + RMER16 LTR ERVK 369 533 0 6 1710 436 353 58 6 chr1 147477458 147477632 -49717800 - ID_B1 SINE B4 -38 186 4 6 1710 242 356 7 13 chr1 147478923 147479049 -49716383 + Lx9 LINE L1 7329 7454 -190 6 1710 252 100 0 0 chr1 147479049 147479089 -49716343 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1710 242 356 7 13 chr1 147479089 147479113 -49716319 + Lx9 LINE L1 7455 7477 -167 6 1710 34 0 0 0 chr1 147479517 147479551 -49715881 + AT_rich Low_complexity Low_complexity 1 34 0 6 1710 419 167 48 0 chr1 147480261 147480345 -49715087 + Lx2 LINE L1 6413 6500 -497 6 1710 330 23 0 44 chr1 147481309 147481325 -49714107 - HAL1-3A_ME LINE L1 -840 2018 2004 6 1710 564 15 0 0 chr1 147481325 147481390 -49714042 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1710 330 23 0 44 chr1 147481390 147481418 -49714014 - HAL1-3A_ME LINE L1 -855 2003 1976 6 1710 311 284 0 0 chr1 147481418 147481499 -49713933 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1710 27 62 0 0 chr1 147481520 147481568 -49713864 + AT_rich Low_complexity Low_complexity 1 48 0 6 1710 252 0 0 0 chr1 147481834 147481862 -49713570 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1710 765 314 118 8 chr1 147481864 147482118 -49713314 + B4A SINE B4 9 290 -2 6 1710 220 194 0 0 chr1 147482159 147482195 -49713237 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1710 281 153 60 20 chr1 147482442 147482542 -49712890 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1710 278 225 11 28 chr1 147482676 147482765 -49712667 - RLTR16 LTR ERVK 0 568 438 6 1710 521 134 0 93 chr1 147482765 147482872 -49712560 + L1_Mus3 LINE L1 4175 4271 -1612 6 1710 8893 117 7 2 chr1 147482872 147485000 -49710432 + L1_Mus3 LINE L1 4495 6634 -4 6 1710 267 273 113 90 chr1 147485012 147485189 -49710243 - Lx8 LINE L1 -235 7238 7058 6 1710 180 0 0 0 chr1 147485276 147485296 -49710136 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1710 467 256 52 29 chr1 147485296 147485469 -49709963 - Lx8 LINE L1 -540 6933 6757 6 1710 1140 75 0 0 chr1 147485554 147485701 -49709731 + B1_Mus2 SINE Alu 1 147 0 6 1710 2113 233 43 14 chr1 147485702 147486215 -49709217 - Lx2B LINE L1 -13 6987 6460 6 1710 308 255 67 19 chr1 147486390 147486494 -49708938 - ORR1D2 LTR MaLR 0 370 262 6 1710 236 102 0 20 chr1 147486726 147486776 -49708656 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1710 491 300 59 52 chr1 147486884 147487172 -49708260 - B4A SINE B4 0 292 3 6 1710 27 0 0 0 chr1 147487435 147487462 -49707970 + AT_rich Low_complexity Low_complexity 1 27 0 6 1710 493 72 29 0 chr1 147487870 147487939 -49707493 + Lx3C LINE L1 6311 6381 -595 6 1710 3374 63 2 16 chr1 147487947 147488395 -49707037 + L1_Mus1 LINE L1 6126 6567 0 6 1710 1420 137 8 24 chr1 147488422 147488669 -49706763 + L1_Mus3 LINE L1 6394 6636 -2 6 1710 3062 162 14 60 chr1 147488665 147489296 -49706136 + Lx3C LINE L1 6373 6974 -2 6 1710 21 0 0 0 chr1 147489471 147489492 -49705940 + AT_rich Low_complexity Low_complexity 1 21 0 6 1710 26 0 0 0 chr1 147490021 147490047 -49705385 + AT_rich Low_complexity Low_complexity 1 26 0 6 1710 23 33 0 0 chr1 147491321 147491351 -49704081 + AT_rich Low_complexity Low_complexity 1 30 0 6 1710 1698 152 16 22 chr1 147491490 147491588 -49703844 + Lx LINE L1 6341 6437 -217 6 1710 2790 44 21 0 chr1 147491588 147491927 -49703505 + ORR1A1 LTR MaLR 1 346 0 6 1710 1698 152 16 22 chr1 147491927 147492144 -49703288 + Lx LINE L1 6438 6654 0 6 1710 2702 97 20 8 chr1 147493108 147493502 -49701930 - L1_Mus4 LINE L1 -5 6631 6233 6 1710 493 267 81 27 chr1 147494004 147494189 -49701243 - Lx6 LINE L1 -16 7444 7250 6 1710 714 281 0 0 chr1 147494192 147494391 -49701041 + L1_Mur3 LINE L1 889 1087 -6625 6 1710 1224 300 48 8 chr1 147494501 147494877 -49700555 + Lx6 LINE L1 7034 7424 -36 6 1710 27 49 0 0 chr1 147495116 147495157 -49700275 + AT_rich Low_complexity Low_complexity 1 41 0 6 1710 271 281 20 20 chr1 147495549 147495647 -49699785 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 6 1710 467 31 0 30 chr1 147496810 147496876 -49698556 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1710 1910 241 31 22 chr1 147497132 147497587 -49697845 + RMER15 LTR ERVL 113 571 -4 6 1710 348 43 0 0 chr1 147497712 147497758 -49697674 + (TTG)n Simple_repeat Simple_repeat 1 46 0 6 1710 22 35 0 0 chr1 147498095 147498124 -49697308 + AT_rich Low_complexity Low_complexity 1 29 0 6 1710 3422 175 5 0 chr1 147498124 147498717 -49696715 - Lx4A LINE L1 -3 7055 6460 6 1710 5330 165 30 23 chr1 147498752 147499989 -49695443 - Lx4A LINE L1 -929 6129 4865 6 1710 17778 147 60 25 chr1 147500000 147502652 -49692780 - L1_Mur2 LINE L1 -1024 4853 2074 1 1710 180 0 0 0 chr1 147502652 147502672 -49692760 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1710 17778 147 60 25 chr1 147502672 147502718 -49692714 - L1_Mur2 LINE L1 -3804 2073 2050 1 1710 276 77 0 0 chr1 147502718 147502757 -49692675 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1710 17778 153 34 42 chr1 147502757 147504306 -49691126 - L1_Mur2 LINE L1 -3828 2049 531 1 1710 579 296 46 11 chr1 147504554 147504728 -49690704 - B3 SINE B2 -13 203 24 4 1710 207 246 14 14 chr1 147505222 147505292 -49690140 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 5 1710 573 312 24 0 chr1 147505833 147506038 -49689394 + B3 SINE B2 2 211 -5 6 1710 266 282 0 0 chr1 147506038 147506109 -49689323 + Lx7 LINE L1 5651 5721 -1975 7 1710 991 96 60 0 chr1 147507095 147507261 -49688171 - L1_Mus3 LINE L1 0 6638 6463 8 1710 217 358 57 50 chr1 147509325 147509466 -49685966 - MIRb SINE MIR -102 166 25 9 1710 440 374 84 18 chr1 147510167 147510393 -49685039 + MER70B LTR ERVL 49 289 -289 1 1710 201 94 0 0 chr1 147510396 147510428 -49685004 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1710 414 0 0 0 chr1 147510681 147510727 -49684705 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1710 396 0 0 0 chr1 147510727 147510770 -49684662 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1710 180 296 49 12 chr1 147511077 147511159 -49684273 + MIRb SINE MIR 107 191 -77 1 1710 183 42 0 0 chr1 147511719 147511743 -49683689 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1710 744 303 89 38 chr1 147511954 147512324 -49683108 - Lx8 LINE L1 0 7473 7085 1 1710 416 309 0 86 chr1 147512604 147512766 -49682666 + RSINE1 SINE B4 5 150 -15 1 1710 252 86 0 0 chr1 147512768 147512803 -49682629 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1710 512 298 155 32 chr1 147512907 147513094 -49682338 + B4A SINE B4 2 211 -81 1 1710 211 179 17 35 chr1 147513773 147513831 -49681601 + (TTG)n Simple_repeat Simple_repeat 1 57 0 2 1710 412 188 89 103 chr1 147513994 147514208 -49681224 + Lx9 LINE L1 7433 7643 -1 2 1710 2765 246 168 11 chr1 147514222 147515181 -49680251 + Lx7 LINE L1 5635 6743 -953 2 1710 22 0 0 0 chr1 147515181 147515203 -49680229 + AT_rich Low_complexity Low_complexity 1 22 0 2 1710 2534 146 25 21 chr1 147515226 147515701 -49679731 - L1_Mur2 LINE L1 -1411 4466 3990 2 1710 4134 126 112 8 chr1 147515702 147516530 -49678902 + Lx3_Mus LINE L1 5105 6013 -1045 2 1710 3245 96 52 10 chr1 147516529 147516596 -49678836 - Lx3_Mus LINE L1 -899 6110 6036 2 1710 285 29 0 0 chr1 147516596 147516630 -49678802 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 2 1710 6442 87 16 13 chr1 147516630 147517700 -49677732 - Lx3_Mus LINE L1 -974 6035 4965 2 1710 3596 132 6 7 chr1 147517680 147518223 -49677209 + Lx3_Mus LINE L1 6097 6638 -371 2 1710 760 259 53 19 chr1 147518272 147518481 -49676951 + Lx7 LINE L1 6755 6970 -726 2 1710 927 284 85 45 chr1 147518464 147518888 -49676544 + Lx7 LINE L1 7234 7674 -22 2 1710 650 326 29 18 chr1 147518976 147519405 -49676027 + Lx8 LINE L1 5307 5773 -527 2 1710 672 259 141 0 chr1 147519420 147519605 -49675827 + B3 SINE B2 6 216 0 2 1710 589 281 25 25 chr1 147520201 147520398 -49675034 + Lx8 LINE L1 6330 6526 -947 2 1710 282 306 0 35 chr1 147521505 147521620 -49673812 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 2 1710 731 350 38 27 chr1 147521741 147522111 -49673321 + MLT1E2 LTR MaLR 250 623 -4 3 1710 195 322 75 32 chr1 147522130 147522223 -49673209 - MIR SINE MIR -72 190 94 3 1710 30 0 0 0 chr1 147523027 147523057 -49672375 + AT_rich Low_complexity Low_complexity 1 30 0 3 1710 3677 181 15 115 chr1 147523953 147525043 -49670389 + MusHAL1 LINE L1 33 1013 -1699 3 1710 3357 145 77 3 chr1 147525027 147525649 -49669783 + MusHAL1 LINE L1 1438 2105 -607 3 1710 260 177 67 50 chr1 147525664 147525783 -49669649 + L1_Mur1 LINE L1 3254 3374 -2512 3 1710 241 224 136 34 chr1 147525787 147525875 -49669557 + Lx3C LINE L1 6845 6941 -35 3 1710 385 364 19 5 chr1 147526032 147526242 -49669190 - Lx8 LINE L1 -496 6977 6765 3 1710 1428 94 5 0 chr1 147526243 147526480 -49668952 - L1_Mus1 LINE L1 0 6567 6352 3 1710 3145 63 0 0 chr1 147526480 147526874 -49668558 + L1_Mus1 LINE L1 5935 6328 -239 3 1710 331 307 12 128 chr1 147526898 147527070 -49668362 - Lx8 LINE L1 -722 6751 6600 3 1710 27 29 0 0 chr1 147527351 147527385 -49668047 + AT_rich Low_complexity Low_complexity 1 34 0 3 1710 24 53 0 0 chr1 147527494 147527532 -49667900 + AT_rich Low_complexity Low_complexity 1 38 0 3 1710 1509 168 49 0 chr1 147527532 147527817 -49667615 - Lx2B LINE L1 -858 6142 5844 4 1710 806 239 16 33 chr1 147527815 147528057 -49667375 + Lx2B LINE L1 6756 6993 -7 4 1710 3916 153 6 1 chr1 147528537 147529206 -49666226 - Lx3B LINE L1 -5 6968 6297 4 1710 27 49 0 0 chr1 147529413 147529454 -49665978 + AT_rich Low_complexity Low_complexity 1 41 0 4 1710 21 0 0 31 chr1 147529474 147529491 -49665941 + AT_rich Low_complexity Low_complexity 1 17 0 4 1710 411 21 0 0 chr1 147529491 147529539 -49665893 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1710 21 0 0 31 chr1 147529539 147529553 -49665879 + AT_rich Low_complexity Low_complexity 1 14 0 4 1710 725 298 125 23 chr1 147531727 147532160 -49663272 - Lx7 LINE L1 0 7696 7220 4 1710 454 217 19 0 chr1 147532286 147532392 -49663040 - MusHAL1 LINE L1 -2027 685 578 4 1710 339 194 15 15 chr1 147532396 147532464 -49662968 + RLTR9E LTR ERVK 342 409 0 4 1710 1318 263 47 16 chr1 147532464 147532850 -49662582 - Lx7 LINE L1 -1018 6678 6281 4 1710 6183 212 46 25 chr1 147532861 147533412 -49662020 - L1_Mur3 LINE L1 -468 5412 4858 5 1710 302 0 26 0 chr1 147533412 147533450 -49661982 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1710 6183 212 46 25 chr1 147533450 147534610 -49660822 - L1_Mur3 LINE L1 -1023 4857 3665 5 1710 444 227 15 8 chr1 147534600 147534733 -49660699 - L1_Mur3 LINE L1 -2738 3142 3009 5 1710 420 374 20 44 chr1 147535170 147535374 -49660058 - MLT1E2 LTR MaLR -428 199 1 5 1710 192 77 0 0 chr1 147535463 147535489 -49659943 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1710 446 349 48 65 chr1 147535870 147536225 -49659207 + MLT1B LTR MaLR 42 390 0 5 1710 7453 84 6 1 chr1 147536256 147537491 -49657941 + L1_Mus1 LINE L1 5327 6566 -1 5 1710 392 320 6 60 chr1 147537714 147537897 -49657535 + MLT2B2 LTR ERVL 11 183 -332 5 1710 845 113 26 78 chr1 147538003 147538157 -49657275 - B1_Mus2 SINE Alu -1 146 1 5 1710 364 130 82 31 chr1 147538318 147538477 -49656955 + (TA)n Simple_repeat Simple_repeat 2 168 0 5 1710 372 367 36 7 chr1 147538608 147538748 -49656684 + B3A SINE B2 4 147 -51 5 1710 7154 106 17 14 chr1 147539249 147540445 -49654987 + L1_Mus3 LINE L1 5472 6637 -1 6 1710 256 377 17 17 chr1 147540882 147540998 -49654434 + MTD LTR MaLR 10 125 -294 6 1710 384 116 0 14 chr1 147540999 147541048 -49654384 - L1_Mus1 LINE L1 -584 5983 5935 6 1710 1639 69 5 0 chr1 147541048 147541264 -49654168 + L1_Mus1 LINE L1 6351 6567 0 6 1710 384 116 0 14 chr1 147541264 147541284 -49654148 - L1_Mus1 LINE L1 -633 5934 5916 6 1710 39 84 0 0 chr1 147541300 147541395 -49654037 + AT_rich Low_complexity Low_complexity 1 95 0 6 1710 13661 120 18 12 chr1 147541785 147544941 -49650491 + L1Md_F2 LINE L1 98 3207 -2676 6 1710 708 62 0 0 chr1 147544941 147545038 -49650394 - L1_Mm LINE L1 -2600 3283 3187 6 1710 7972 96 24 43 chr1 147545041 147546291 -49649141 + L1Md_F2 LINE L1 4360 5585 -298 6 1710 7149 75 13 2 chr1 147546292 147547265 -49648167 + L1Md_F2 LINE L1 5587 6570 -12 6 1710 268 224 29 15 chr1 147547674 147547742 -49647690 - RSINE1 SINE B4 -28 137 69 6 1710 345 280 92 33 chr1 147547951 147548257 -49647175 - L1MC LINE L1 -3245 2901 2579 6 1710 249 83 0 0 chr1 147548627 147548663 -49646769 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1710 403 326 161 21 chr1 147548926 147549211 -49646221 + LTR41 LTR ERVL 423 747 -21 7 1710 42 20 0 0 chr1 147549870 147549919 -49645513 + AT_rich Low_complexity Low_complexity 1 49 0 7 1710 23 33 0 0 chr1 147550370 147550400 -49645032 + AT_rich Low_complexity Low_complexity 1 30 0 7 1710 964 193 12 0 chr1 147551638 147551809 -49643623 - URR1A DNA MER1_type 0 226 54 7 1710 356 301 93 21 chr1 147551641 147551834 -49643598 + CYRA11_Mm Unknown Y-chromosome 175 381 -236 7 1710 640 255 184 39 chr1 147551934 147552321 -49643111 - Lx7 LINE L1 0 7696 7254 7 1710 3451 67 4 0 chr1 147552529 147552991 -49642441 - L1Md_F2 LINE L1 -433 5450 4987 7 1710 844 75 0 0 chr1 147552994 147553101 -49642331 + L1Md_F2 LINE L1 5480 5586 -297 7 1710 6878 103 1 8 chr1 147553101 147554085 -49641347 + L1Md_F2 LINE L1 5587 6563 -19 7 1710 417 357 21 26 chr1 147554694 147554884 -49640548 + B4A SINE B4 48 236 -56 7 1710 2102 185 76 2 chr1 147555154 147555576 -49639856 - Lx4A LINE L1 -41 7017 6565 7 1710 3455 145 123 22 chr1 147555567 147556636 -49638796 - Lx4A LINE L1 -751 6307 5114 7 1710 1413 106 30 38 chr1 147556638 147556873 -49638559 + Lx4A LINE L1 4854 5086 -791 7 1710 3048 88 21 2 chr1 147557291 147557710 -49637722 - L1_Mus1 LINE L1 -3 6564 6138 7 1710 600 283 140 8 chr1 147558669 147558904 -49636528 + Lx6 LINE L1 7167 7432 -28 8 1710 209 216 20 0 chr1 147558906 147558957 -49636475 + A-rich Low_complexity Low_complexity 3 54 0 8 1710 451 290 69 62 chr1 147559621 147560102 -49635330 + L1MDa LINE L1 967 1450 -5183 8 1710 384 61 0 0 chr1 147560421 147560470 -49634962 + HAL1-3A_ME LINE L1 1970 2018 -840 8 1710 420 284 230 34 chr1 147560579 147561085 -49634347 + L1MDa LINE L1 3802 4405 -2132 8 1710 356 314 155 14 chr1 147561273 147561480 -49633952 + L1MDa LINE L1 4418 4653 -1884 8 1710 272 200 14 0 chr1 147561620 147561690 -49633742 + (TA)n Simple_repeat Simple_repeat 2 72 0 8 1710 41 36 0 0 chr1 147561715 147561770 -49633662 + AT_rich Low_complexity Low_complexity 1 55 0 8 1710 1134 95 0 0 chr1 147561846 147561993 -49633439 + B1_Mus1 SINE Alu 2 148 0 8 1710 198 103 0 0 chr1 147561993 147562022 -49633410 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1710 261 83 0 0 chr1 147562319 147562355 -49633077 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 8 1710 367 262 10 0 chr1 147562355 147562458 -49632974 - Lx5 LINE L1 -19 7031 6928 8 1710 1355 203 14 7 chr1 147562458 147562736 -49632696 - ORR1A3-int LTR MaLR -1458 505 226 9 1710 256 146 0 0 chr1 147562734 147562750 -49632682 + ORR1A2 LTR MaLR 27 42 -285 9 1710 876 199 42 33 chr1 147562750 147562963 -49632469 + ORR1A2-int LTR MaLR 3 217 -1746 9 1710 438 226 0 10 chr1 147562963 147563066 -49632366 + Lx2 LINE L1 6896 6997 0 9 1710 420 313 33 13 chr1 147563408 147563560 -49631872 + MTD LTR MaLR 1 155 -264 9 1710 1197 55 0 0 chr1 147563890 147564036 -49631396 - B1_Mm SINE Alu 0 147 2 9 1710 4349 114 14 0 chr1 147564424 147565081 -49630351 + L1_Mur1 LINE L1 4531 5196 -690 9 1710 1206 65 18 0 chr1 147565082 147565250 -49630182 + L1Md_F2 LINE L1 6400 6570 -12 9 1710 1845 75 0 77 chr1 147565273 147565560 -49629872 + ORR1A2 LTR MaLR 5 269 -58 9 1710 408 99 0 0 chr1 147565560 147565631 -49629801 + (A)n Simple_repeat Simple_repeat 1 71 0 9 1710 3610 119 58 2 chr1 147565631 147565702 -49629730 + L1_Mur1 LINE L1 5193 5270 -616 9 1710 315 0 0 0 chr1 147565702 147565737 -49629695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1710 3610 119 58 2 chr1 147565737 147566231 -49629201 + L1_Mur1 LINE L1 5271 5788 -98 9 1710 2175 128 57 8 chr1 147566231 147566601 -49628831 + Lx3_Mus LINE L1 6603 6990 -19 1 1710 234 0 0 0 chr1 147567276 147567302 -49628130 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1710 1477 297 29 18 chr1 147567315 147567874 -49627558 + L1_Mur3 LINE L1 4677 5241 -639 1 1710 36 53 0 0 chr1 147568829 147568886 -49626546 + AT_rich Low_complexity Low_complexity 1 57 0 1 1710 325 228 155 19 chr1 147568992 147569095 -49626337 - MLT1A1 LTR MaLR -2 406 290 1 1710 6529 86 30 2 chr1 147569494 147570866 -49624566 - L1Md_F2 LINE L1 -9 6573 5167 1 1710 21 0 0 0 chr1 147571125 147571146 -49624286 + AT_rich Low_complexity Low_complexity 1 21 0 1 1710 225 280 0 39 chr1 147571584 147571662 -49623770 + CT-rich Low_complexity Low_complexity 3 77 0 1 1710 233 265 132 101 chr1 147573065 147573254 -49622178 + MTE2a LTR MaLR 181 375 -4 1 1710 12301 151 22 8 chr1 147573545 147576577 -49618855 - L1_Mus4 LINE L1 0 6636 3564 1 1710 7045 121 9 5 chr1 147576581 147578042 -49617390 - L1Md_F2 LINE L1 -3 6579 5106 1 1710 12202 78 7 2 chr1 147578038 147579722 -49615710 - L1Md_A LINE L1 -2087 3796 2104 1 1710 17431 107 18 55 chr1 147579704 147581271 -49614161 - L1Md_A LINE L1 -221 6361 4795 1 1710 1885 43 4 0 chr1 147581271 147581503 -49613929 + L1Md_T LINE L1 6348 6580 -2 1 1710 17431 166 31 97 chr1 147581503 147585957 -49609475 - L1Md_A LINE L1 -1089 4794 714 1 213 249 212 212 0 chr1 147587052 147587132 -49608300 + Lx9 LINE L1 7368 7464 -180 1 1711 345 241 68 0 chr1 147587148 147587281 -49608151 + Lx9 LINE L1 7503 7644 0 1 1711 207 162 0 0 chr1 147587796 147587833 -49607599 + T-rich Low_complexity Low_complexity 66 102 0 1 1711 23 0 0 0 chr1 147588016 147588039 -49607393 + AT_rich Low_complexity Low_complexity 1 23 0 1 1711 1374 198 8 8 chr1 147588042 147588307 -49607125 - Lx4A LINE L1 -3 7055 6791 1 1711 21 0 0 0 chr1 147588340 147588361 -49607071 + AT_rich Low_complexity Low_complexity 1 21 0 1 1711 786 192 26 0 chr1 147588387 147588538 -49606894 - Lx4A LINE L1 -260 6798 6644 1 1711 400 238 217 17 chr1 147589163 147589338 -49606094 - B3 SINE B2 -6 210 1 1 1711 299 228 11 0 chr1 147590741 147590833 -49604599 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1711 5020 107 14 1 chr1 147591034 147591756 -49603676 - Lx3_Mus LINE L1 -8 7001 6271 1 1711 4245 62 2 14 chr1 147591767 147592322 -49603110 + L1_Mus1 LINE L1 6019 6566 -1 1 1711 430 374 11 40 chr1 147592437 147592657 -49602775 - B3A SINE B2 0 216 6 1 1711 21 36 0 0 chr1 147592669 147592697 -49602735 + AT_rich Low_complexity Low_complexity 1 28 0 1 1711 3591 119 29 0 chr1 147592964 147593519 -49601913 + Lx2 LINE L1 6422 6992 -5 1 1711 4519 243 46 19 chr1 147593529 147595311 -49600121 + Lx6 LINE L1 4819 6877 -583 1 1711 558 0 0 0 chr1 147595311 147595373 -49600059 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1711 243 0 0 0 chr1 147595373 147595399 -49600033 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1711 2498 223 92 12 chr1 147595451 147596332 -49599100 - Lx4B LINE L1 0 7050 6070 1 1711 2165 190 15 72 chr1 147596329 147596853 -49598579 + Lx5 LINE L1 5588 6055 -995 1 1711 1028 304 4 83 chr1 147596843 147597271 -49598161 + Lx6 LINE L1 6885 7547 -149 1 1711 442 214 118 8 chr1 147597303 147597430 -49598002 - Lx3B LINE L1 -3 6970 6830 1 1711 8369 141 13 3 chr1 147597459 147598992 -49596440 + Lx3B LINE L1 4479 6023 -950 1 1711 440 287 0 0 chr1 147599002 147599131 -49596301 + Lx6 LINE L1 7305 7433 -27 1 1711 195 42 0 0 chr1 147599186 147599210 -49596222 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1711 21 0 0 0 chr1 147599534 147599555 -49595877 + AT_rich Low_complexity Low_complexity 1 21 0 1 1711 381 333 33 16 chr1 147600684 147600867 -49594565 + MER95 LTR ERV 72 257 -174 1 1711 264 350 112 41 chr1 147601038 147601208 -49594224 - ORR1E LTR MaLR 0 359 178 1 1711 225 352 0 40 chr1 147601342 147601416 -49594016 + B2_Mm2 SINE B2 3 73 -122 1 1711 233 274 10 31 chr1 147601982 147602080 -49593352 + L1MC2 LINE L1 6102 6197 -147 1 1711 801 80 0 60 chr1 147602094 147602227 -49593205 + B1_Mus2 SINE Alu 2 126 -21 1 1711 21 0 0 0 chr1 147602891 147602912 -49592520 + AT_rich Low_complexity Low_complexity 1 21 0 1 1711 2584 211 22 16 chr1 147602949 147603843 -49591589 + L1VL4 LINE L1 238 1136 -2423 1 1711 2438 132 20 25 chr1 147603831 147604273 -49591159 + L1VL4 LINE L1 1806 2245 -1314 1 1711 4108 144 106 4 chr1 147604270 147604962 -49590470 - Lx3A LINE L1 -106 6875 6114 1 1711 1693 93 42 26 chr1 147604959 147605097 -49590335 + Lx3A LINE L1 5644 5782 -1199 1 1711 3042 33 0 0 chr1 147605097 147605461 -49589971 + L1Md_T LINE L1 6219 6582 0 1 1711 1693 93 42 26 chr1 147605461 147605587 -49589845 + Lx3A LINE L1 5783 5912 -1069 1 1711 325 90 0 29 chr1 147605589 147605658 -49589774 + (CAAAAA)n Simple_repeat Simple_repeat 3 69 0 1 1711 1298 111 14 5 chr1 147605666 147605874 -49589558 + Lx3A LINE L1 5917 6126 -847 1 1711 240 167 0 0 chr1 147606398 147606446 -49588986 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1711 22 35 0 0 chr1 147608133 147608162 -49587270 + AT_rich Low_complexity Low_complexity 1 29 0 1 1711 446 381 71 0 chr1 147611942 147612139 -49583293 - ID_B1 SINE B4 0 224 14 1 1711 2641 272 39 23 chr1 147612213 147612352 -49583080 + Lx5 LINE L1 5952 6151 -907 1 1711 195 42 0 0 chr1 147612352 147612376 -49583056 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 1 1711 3724 223 64 7 chr1 147612376 147613237 -49582195 + Lx5 LINE L1 6152 7049 -9 1 1711 27 29 0 0 chr1 147613712 147613746 -49581686 + AT_rich Low_complexity Low_complexity 1 34 0 1 1711 277 267 117 31 chr1 147613811 147614121 -49581311 - L1MA4A LINE L1 -23 6277 5937 1 1711 23 92 0 0 chr1 147615329 147615394 -49580038 + AT_rich Low_complexity Low_complexity 1 65 0 1 1711 1081 239 164 26 chr1 147616093 147616441 -49578991 - MTD LTR MaLR -4 415 20 1 1711 6781 89 52 10 chr1 147616719 147617701 -49577731 + RLTR13D5 LTR ERVK 1 1023 0 1 1711 1451 326 25 54 chr1 147617930 147618685 -49576747 - Lx9 LINE L1 -563 7081 6349 1 1711 688 255 0 0 chr1 147619037 147619194 -49576238 - Lx LINE L1 -231 6423 6267 1 1711 777 184 35 6 chr1 147619196 147619365 -49576067 + Lx LINE L1 6474 6647 -7 1 1711 22 0 0 0 chr1 147619590 147619612 -49575820 + AT_rich Low_complexity Low_complexity 1 22 0 1 1711 31 58 0 0 chr1 147619779 147619831 -49575601 + AT_rich Low_complexity Low_complexity 1 52 0 1 1711 1176 68 0 0 chr1 147619926 147620072 -49575360 - B1_Mm SINE Alu 0 147 2 1 1711 1070 82 7 0 chr1 147621030 147621176 -49574256 + B1_Mm SINE Alu 1 147 0 1 1711 339 119 0 0 chr1 147621178 147621245 -49574187 + (A)n Simple_repeat Simple_repeat 1 67 0 1 1711 1048 199 0 0 chr1 147621811 147622017 -49573415 - Lx LINE L1 0 6997 6792 1 1711 1489 192 23 7 chr1 147622264 147622573 -49572859 - Lx LINE L1 -13 6641 6328 1 1711 360 256 12 0 chr1 147622689 147622775 -49572657 + Lx7 LINE L1 7173 7259 -437 1 1711 2008 128 0 53 chr1 147622780 147623136 -49572296 - Lx LINE L1 0 6654 6318 1 1711 1833 169 46 3 chr1 147623156 147623506 -49571926 - L1_Mm LINE L1 -314 5569 5205 1 1711 1278 135 0 0 chr1 147623508 147623716 -49571716 - L1_Mur2 LINE L1 -2031 3846 3639 1 1711 1732 172 6 0 chr1 147623708 147624021 -49571411 + L1_Mur2 LINE L1 4892 5206 -671 1 1711 1030 252 57 78 chr1 147624018 147624478 -49570954 + Lx7 LINE L1 7247 7696 0 1 1711 2521 20 0 0 chr1 147625742 147626037 -49569395 - L1_Mm LINE L1 -1719 4164 3870 1 1711 359 118 0 0 chr1 147626030 147626081 -49569351 - L1_Mm LINE L1 -2336 3547 3497 1 1711 4116 25 2 4 chr1 147626081 147626569 -49568863 + L1Md_F2 LINE L1 6094 6580 -2 1 1711 22 35 0 0 chr1 147626656 147626685 -49568747 + AT_rich Low_complexity Low_complexity 1 29 0 1 1711 25 0 0 0 chr1 147626951 147626976 -49568456 + AT_rich Low_complexity Low_complexity 1 25 0 1 1711 27 0 0 0 chr1 147627946 147627973 -49567459 + AT_rich Low_complexity Low_complexity 1 27 0 1 1711 29 28 0 0 chr1 147628426 147628462 -49566970 + AT_rich Low_complexity Low_complexity 1 36 0 1 1711 748 174 0 0 chr1 147628555 147628676 -49566756 - Lx3B LINE L1 -168 6808 6688 1 1711 1095 98 7 0 chr1 147628657 147628810 -49566622 - Lx3B LINE L1 -1164 5809 5656 1 1711 2010 160 6 1 chr1 147628809 147629150 -49566282 + Lx6 LINE L1 5348 5683 -1777 1 1711 336 102 0 0 chr1 147629222 147629271 -49566161 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1711 14400 27 2 0 chr1 147629273 147631635 -49563797 - L1Md_T LINE L1 0 6582 4216 1 1711 3298 230 31 35 chr1 147632144 147633314 -49562118 + Lx4B LINE L1 5506 6653 -1 1 1711 26 64 0 0 chr1 147633321 147633368 -49562064 + AT_rich Low_complexity Low_complexity 1 47 0 1 1711 501 241 175 76 chr1 147634142 147634179 -49561253 - Lx7 LINE L1 -1276 6420 6383 1 1711 558 101 0 29 chr1 147634179 147634281 -49561151 - L1_Mus3 LINE L1 0 6638 6540 1 1711 501 241 175 76 chr1 147634281 147634463 -49560969 - Lx7 LINE L1 -1314 6382 6175 1 1711 369 0 0 0 chr1 147634463 147634504 -49560928 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1711 501 241 175 76 chr1 147634504 147634534 -49560898 - Lx7 LINE L1 -1522 6174 6146 1 1711 1006 263 89 30 chr1 147634585 147634922 -49560510 + Lx6 LINE L1 6378 6734 -726 1 1711 184 130 43 0 chr1 147634932 147634978 -49560454 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1711 376 251 296 32 chr1 147634988 147635174 -49560258 + Lx7 LINE L1 7045 7279 -417 1 1711 243 0 0 0 chr1 147635729 147635756 -49559676 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1711 496 273 102 31 chr1 147636324 147636638 -49558794 - L1MCa LINE L1 -3679 3327 2988 1 1711 332 312 155 29 chr1 147636650 147636960 -49558472 - L1MCa LINE L1 -4244 2949 2601 1 1711 21 0 0 0 chr1 147636974 147636995 -49558437 + AT_rich Low_complexity Low_complexity 1 21 0 1 1711 296 167 19 0 chr1 147637103 147637157 -49558275 - ORR1B2 LTR MaLR 0 367 313 1 1711 192 77 0 0 chr1 147637289 147637315 -49558117 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 1711 1640 194 60 3 chr1 147637322 147637638 -49557794 - Lx2B LINE L1 -27 6973 6640 1 1711 6631 152 23 4 chr1 147637633 147639043 -49556389 + Lx2B LINE L1 5208 6652 -348 1 1711 1531 249 6 3 chr1 147639044 147639367 -49556065 - ORR1B2 LTR MaLR -42 325 2 1 1711 882 118 0 0 chr1 147639483 147639653 -49555779 + (TC)n Simple_repeat Simple_repeat 1 170 0 1 1711 771 246 83 11 chr1 147639711 147640071 -49555361 - L1MCa LINE L1 -4819 2515 2117 1 1711 217 170 0 70 chr1 147640413 147640470 -49554962 + CT-rich Low_complexity Low_complexity 2 54 0 1 1711 37925 31 0 0 chr1 147640989 147646842 -49548590 - L1Md_T LINE L1 0 6585 635 1 1711 22 0 0 0 chr1 147647187 147647209 -49548223 + AT_rich Low_complexity Low_complexity 1 22 0 1 1711 526 269 83 6 chr1 147647267 147647435 -49547997 - Lx7 LINE L1 -333 7363 7183 1 1711 1091 301 63 5 chr1 147647449 147647816 -49547616 - Lx7 LINE L1 -401 7295 6908 1 1711 200 234 0 21 chr1 147647965 147648013 -49547419 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1 1711 1156 106 11 6 chr1 147649116 147649297 -49546135 + L1_Mus3 LINE L1 6457 6638 0 2 1711 3089 37 16 3 chr1 147649430 147649814 -49545618 - L1Md_F3 LINE L1 0 6584 6196 2 1711 12228 168 30 15 chr1 147650068 147650394 -49545038 - L1VL4 LINE L1 -2112 3774 3447 2 1711 207 0 0 0 chr1 147650394 147650417 -49545015 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1711 12228 168 30 15 chr1 147650417 147651231 -49544201 - L1VL4 LINE L1 -2440 3446 2605 2 1711 3198 56 5 0 chr1 147651231 147651623 -49543809 - MTA_Mm LTR MaLR 0 396 3 2 1711 12228 170 29 17 chr1 147651623 147653110 -49542322 - L1VL4 LINE L1 -3282 2604 1117 2 1711 1312 110 11 0 chr1 147653110 147653301 -49542131 - L1_Mus1 LINE L1 0 6567 6375 2 1711 2062 209 14 46 chr1 147653301 147653694 -49541738 - L1VL4 LINE L1 -5541 1116 720 2 1711 2503 92 30 32 chr1 147653767 147653985 -49541447 + RLTR44A LTR ERVK 1 223 -182 2 1711 6090 65 18 28 chr1 147653985 147654815 -49540617 + RLTR13B2 LTR ERVK 1 822 0 2 1711 2503 92 30 32 chr1 147654815 147655001 -49540431 + RLTR44A LTR ERVK 224 404 -1 2 1711 185 35 0 65 chr1 147655356 147655387 -49540045 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1711 21 0 0 0 chr1 147655735 147655756 -49539676 + AT_rich Low_complexity Low_complexity 1 21 0 2 1711 1971 166 3 32 chr1 147657315 147657663 -49537769 - ORR1A1 LTR MaLR -8 338 1 2 1711 9175 170 83 10 chr1 147657664 147659480 -49535952 - ORR1A1-int LTR MaLR -1 1962 15 2 1711 310 211 18 0 chr1 147659461 147659518 -49535914 - ORR1A1 LTR MaLR -247 80 23 2 1711 369 0 0 0 chr1 147659530 147659571 -49535861 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1711 339 301 11 0 chr1 147659972 147660065 -49535367 - B3 SINE B2 -122 94 1 2 1711 266 0 0 29 chr1 147660112 147660147 -49535285 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1711 1064 68 0 0 chr1 147660148 147660281 -49535151 - B1_Mus1 SINE Alu -12 136 4 2 1711 24 0 0 0 chr1 147660394 147660418 -49535014 + AT_rich Low_complexity Low_complexity 1 24 0 2 1711 25 83 0 0 chr1 147660885 147660945 -49534487 + AT_rich Low_complexity Low_complexity 1 60 0 2 1711 204 135 0 0 chr1 147661095 147661132 -49534300 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1711 294 303 0 0 chr1 147661145 147661244 -49534188 - Lx7 LINE L1 -382 7314 7216 2 1711 2994 148 30 31 chr1 147661310 147661666 -49533766 + L1_Mur2 LINE L1 1702 2049 -3828 2 1711 351 0 0 0 chr1 147661666 147661705 -49533727 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1711 2994 148 30 31 chr1 147661705 147661953 -49533479 + L1_Mur2 LINE L1 2050 2304 -3573 2 1711 3397 177 46 55 chr1 147661956 147662743 -49532689 + L1_Mur2 LINE L1 5028 5807 -70 2 1711 246 280 78 20 chr1 147663540 147663642 -49531790 + L1MD3 LINE L1 6718 6825 -960 2 1711 591 340 116 22 chr1 147663735 147664226 -49531206 + L1MD3 LINE L1 6899 7435 -560 2 1711 10284 95 17 8 chr1 147664259 147665221 -49530211 - MusHAL1 LINE L1 -4 2708 1750 2 1711 3301 43 8 0 chr1 147665221 147665614 -49529818 - MTA_Mm LTR MaLR 0 396 1 2 1711 10284 95 17 8 chr1 147665614 147666190 -49529242 - MusHAL1 LINE L1 -963 1749 1156 2 1711 37929 45 0 3 chr1 147666237 147672690 -49522742 - L1Md_T LINE L1 0 6585 58 2 1711 2591 99 49 15 chr1 147672690 147673100 -49522332 - RLTR13D2 LTR ERVK -14 1009 586 2 1711 3678 154 61 10 chr1 147673265 147673953 -49521479 + Lx2 LINE L1 6174 6896 -101 2 1711 1028 288 62 7 chr1 147674015 147674291 -49521141 + Lx5 LINE L1 6755 7045 -5 2 1711 21 36 0 0 chr1 147675534 147675562 -49519870 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 21 57 0 0 chr1 147676585 147676620 -49518812 + AT_rich Low_complexity Low_complexity 1 35 0 2 1711 378 304 75 6 chr1 147676736 147676895 -49518537 - Lx5 LINE L1 0 7050 6881 2 1711 3215 199 28 18 chr1 147676888 147677501 -49517931 + Lx5 LINE L1 6276 6894 -156 2 1711 270 132 0 0 chr1 147677793 147677846 -49517586 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1711 24 0 0 0 chr1 147678603 147678627 -49516805 + AT_rich Low_complexity Low_complexity 1 24 0 2 1711 1153 254 133 14 chr1 147678863 147679365 -49516067 + L1_Mur3 LINE L1 3567 4128 -1752 2 1711 21 36 0 0 chr1 147679508 147679536 -49515896 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 436 347 10 39 chr1 147679608 147679812 -49515620 + B3A SINE B2 1 198 0 2 1711 356 335 55 116 chr1 147679822 147680021 -49515411 + B3A SINE B2 3 189 -9 2 1711 1070 83 7 0 chr1 147680152 147680296 -49515136 - B1_Mus2 SINE Alu 0 147 3 2 1711 237 326 82 19 chr1 147680480 147680749 -49514683 - L1MC LINE L1 -2354 3792 3507 2 1711 369 276 32 36 chr1 147681014 147681262 -49514170 - L1MC LINE L1 -2975 3171 2925 2 1711 968 320 78 8 chr1 147681626 147681985 -49513447 + Lx6 LINE L1 7001 7384 -76 2 1711 428 343 128 56 chr1 147682235 147682767 -49512665 - MER92B LTR ERV1 0 636 67 2 1711 340 332 69 45 chr1 147683454 147683656 -49511776 + RMER15 LTR ERVL 301 507 -68 2 1711 727 330 70 52 chr1 147683908 147684311 -49511121 - MT2A LTR ERVL -62 471 62 2 1711 336 280 30 0 chr1 147684282 147684382 -49511050 - MTD LTR MaLR -297 122 20 2 1711 3933 169 30 1 chr1 147684700 147685377 -49510055 - Lx4A LINE L1 -3 7055 6360 2 1711 410 314 19 6 chr1 147685439 147685599 -49509833 + RMER15-int LTR ERVL 752 913 -4086 2 1711 297 0 0 0 chr1 147685630 147685663 -49509769 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1711 519 17 0 0 chr1 147685663 147685722 -49509710 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1711 617 316 46 23 chr1 147685941 147686203 -49509229 + RMER15-int LTR ERVL 4257 4524 -475 2 1711 200 200 21 62 chr1 147686209 147686305 -49509127 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 2 1711 293 217 81 76 chr1 147686443 147686601 -49508831 - L1MCb LINE L1 -5882 163 48 2 1711 243 281 66 66 chr1 147686759 147686894 -49508538 - MER77 LTR ERVL -7 600 466 2 1711 1295 256 57 22 chr1 147686894 147687301 -49508131 - MTC LTR MaLR 0 421 1 2 1711 288 409 0 9 chr1 147687359 147687475 -49507957 - MER77 LTR ERVL -216 391 277 2 1711 3027 35 21 5 chr1 147688346 147688722 -49506710 + L1_Mus2 LINE L1 6185 6566 0 2 1711 1066 311 25 56 chr1 147688725 147689239 -49506193 + Lx9 LINE L1 6958 7455 -189 2 1711 480 18 0 0 chr1 147689240 147689297 -49506135 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1711 598 96 8 94 chr1 147689864 147689991 -49505441 + Lx3A LINE L1 6862 6977 -4 2 1711 456 19 0 0 chr1 147690394 147690447 -49504985 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1711 214 351 13 13 chr1 147691081 147691156 -49504276 + ID_B1 SINE B4 85 159 -65 2 1711 3325 234 124 21 chr1 147691239 147691859 -49503573 - Lx2B LINE L1 -5 6995 6308 2 1711 2967 138 68 0 chr1 147691859 147692375 -49503057 - Lx LINE L1 -6 6648 6098 2 1711 3325 234 124 21 chr1 147692375 147692761 -49502671 - Lx2B LINE L1 -693 6307 5885 2 1711 380 333 124 9 chr1 147692838 147693125 -49502307 + MLT1H-int LTR MaLR 770 1111 -298 2 1711 402 243 0 0 chr1 147693692 147693795 -49501637 + (CATA)n Simple_repeat Simple_repeat 2 104 0 2 1711 254 287 20 0 chr1 147694170 147694271 -49501161 + L1M4 LINE L1 5197 5299 -847 2 1711 244 418 78 6 chr1 147695234 147695400 -49500032 - MLT1F2 LTR MaLR -76 484 307 2 1711 257 378 110 16 chr1 147695454 147695645 -49499787 - MLT1F2 LTR MaLR -332 228 20 2 1711 865 71 16 0 chr1 147695728 147695854 -49499578 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 2 1711 1756 164 20 3 chr1 147695892 147696185 -49499247 - ORR1A2 LTR MaLR 0 327 30 2 1711 5940 141 33 2 chr1 147696169 147697167 -49498265 - ORR1A2-int LTR MaLR -154 1809 781 2 1711 426 250 80 0 chr1 147697112 147697200 -49498232 - B1_Mus1 SINE Alu -35 113 19 2 1711 311 137 0 19 chr1 147697194 147697246 -49498186 + ORR1A3-int LTR MaLR 1347 1397 -566 2 1711 896 137 62 0 chr1 147697267 147697413 -49498019 - ORR1A2 LTR MaLR 0 327 173 2 1711 711 0 0 0 chr1 147697616 147697695 -49497737 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2 1711 856 120 0 0 chr1 147697697 147697839 -49497593 - Lx2 LINE L1 -1 6996 6855 2 1711 528 100 0 0 chr1 147697891 147697961 -49497471 - ORR1A2 LTR MaLR -180 147 78 2 1711 287 237 34 0 chr1 147697955 147698014 -49497418 - B1_Mus1 SINE Alu -87 61 1 2 1711 414 90 88 73 chr1 147698014 147698075 -49497357 + B1_Mur4 SINE Alu 79 149 -1 2 1711 437 167 12 0 chr1 147698080 147698164 -49497268 - ORR1A2 LTR MaLR -235 92 8 2 1711 726 12 0 0 chr1 147698168 147698251 -49497181 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1711 2806 88 22 12 chr1 147698796 147699201 -49496231 + L1Md_F2 LINE L1 6163 6571 -11 2 1711 9784 63 0 7 chr1 147699705 147701672 -49493760 - L1Md_F2 LINE L1 -14 6568 4615 2 1711 11549 86 1 8 chr1 147701698 147704124 -49491308 - L1Md_F2 LINE L1 -3084 2799 392 2 1711 681 142 0 0 chr1 147704379 147704492 -49490940 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 2 1711 198 0 0 0 chr1 147704510 147704532 -49490900 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1711 893 112 0 0 chr1 147704725 147704868 -49490564 - Lx2 LINE L1 0 6997 6855 2 1711 3932 154 39 10 chr1 147705364 147706086 -49489346 + Lx2B LINE L1 6253 6995 -5 2 1711 26 88 0 0 chr1 147706286 147706354 -49489078 + AT_rich Low_complexity Low_complexity 1 68 0 2 1711 240 281 57 70 chr1 147706364 147706493 -49488939 + B4A SINE B4 92 224 -68 2 1711 217 131 60 0 chr1 147706496 147706580 -49488852 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1711 318 211 99 0 chr1 147707956 147708027 -49487405 + RLTR19 LTR ERVK 400 477 -22 2 1711 726 12 0 0 chr1 147708228 147708311 -49487121 + (TTC)n Simple_repeat Simple_repeat 2 84 0 2 1711 6563 66 0 1 chr1 147708490 147709396 -49486036 - L1Md_F2 LINE L1 -652 5930 5026 2 1711 4697 74 36 0 chr1 147709396 147710031 -49485401 + L1Md_F2 LINE L1 5923 6580 -2 2 1711 1080 73 0 0 chr1 147710055 147710192 -49485240 + B1_Mm SINE Alu 1 137 -10 2 1711 254 0 83 0 chr1 147710192 147710228 -49485204 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1711 743 277 61 100 chr1 147710235 147710590 -49484842 + RMER2 LTR ERV1 15 474 -93 2 1711 960 136 49 0 chr1 147710590 147710752 -49484680 + L1_Mus3 LINE L1 6454 6623 -15 2 1711 743 276 66 101 chr1 147710752 147710840 -49484592 + RMER2 LTR ERV1 475 567 0 2 1711 319 305 47 24 chr1 147712036 147712203 -49483229 + B3 SINE B2 2 212 -4 2 1711 190 29 0 81 chr1 147713623 147713660 -49481772 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 2 1711 470 328 66 23 chr1 147714230 147714667 -49480765 - L1M2 LINE L1 -1943 4200 3745 2 1711 198 336 123 20 chr1 147714748 147714894 -49480538 + L2 LINE L2 687 847 -2572 2 1711 198 0 0 0 chr1 147715015 147715037 -49480395 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1711 299 284 101 47 chr1 147715541 147715689 -49479743 + MER74C LTR ERVL 304 459 -1 2 1711 452 372 71 27 chr1 147715689 147715891 -49479541 + LTR33 LTR ERVL 101 312 -203 2 1711 228 67 0 0 chr1 147716680 147716710 -49478722 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1711 264 130 0 0 chr1 147716835 147716881 -49478551 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1711 594 302 12 6 chr1 147716887 147717047 -49478385 - RSINE1 SINE B4 0 165 5 2 1712 30 27 0 0 chr1 147718623 147718660 -49476772 + AT_rich Low_complexity Low_complexity 1 37 0 3 1712 308 194 0 0 chr1 147718840 147718902 -49476530 + Lx7 LINE L1 7617 7678 -18 3 1712 180 0 0 0 chr1 147719228 147719248 -49476184 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 1712 4475 247 28 37 chr1 147719283 147720006 -49475426 + Lx9 LINE L1 6418 7141 -503 3 1712 780 68 0 0 chr1 147720006 147720109 -49475323 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 3 1712 4475 247 28 37 chr1 147720109 147720621 -49474811 + Lx9 LINE L1 7142 7641 -3 3 1712 1083 314 51 16 chr1 147721086 147721213 -49474219 - Lx6 LINE L1 -2 7458 7334 3 1712 336 24 0 0 chr1 147721213 147721254 -49474178 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1712 1083 314 51 16 chr1 147721254 147721498 -49473934 - Lx6 LINE L1 -127 7333 7074 3 1712 2447 196 30 23 chr1 147721497 147722072 -49473360 + L1_Mur3 LINE L1 4220 4798 -1082 3 1712 585 309 64 52 chr1 147722265 147722610 -49472822 + RMER20B LTR ERVK 242 590 -37 3 1712 355 351 22 22 chr1 147722637 147722774 -49472658 + RMER20B LTR ERVK 480 616 -11 3 1712 1413 172 59 3 chr1 147722790 147723076 -49472356 + L1_Mur3 LINE L1 4830 5131 -749 3 1712 1827 142 6 58 chr1 147723078 147723302 -49472130 + ORR1A2 LTR MaLR 2 211 -116 3 1712 1420 63 16 5 chr1 147723302 147723493 -49471939 - B2_Mm1t SINE B2 0 193 1 3 1712 1827 142 6 58 chr1 147723493 147723612 -49471820 + ORR1A2 LTR MaLR 212 327 0 3 1712 1395 289 17 8 chr1 147723848 147724207 -49471225 + ORR1D1 LTR MaLR 3 364 -10 3 1712 237 282 96 55 chr1 147724207 147724406 -49471026 - L1_Rod LINE L1 -6387 785 579 3 1712 375 83 0 0 chr1 147725013 147725073 -49470359 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1712 1824 177 35 3 chr1 147725095 147725441 -49469991 - RMER6B LTR ERVK -18 443 87 3 1712 549 321 30 6 chr1 147725432 147725598 -49469834 - B3 SINE B2 -46 170 1 3 1712 36 40 0 0 chr1 147725772 147725822 -49469610 + AT_rich Low_complexity Low_complexity 1 50 0 3 1712 561 168 0 29 chr1 147725822 147725926 -49469506 - RMER6B LTR ERVK -359 102 2 3 1712 447 78 0 0 chr1 147725927 147725991 -49469441 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1712 22 0 0 0 chr1 147726499 147726521 -49468911 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 21 0 0 0 chr1 147727061 147727082 -49468350 + AT_rich Low_complexity Low_complexity 1 21 0 3 1712 286 366 126 16 chr1 147728021 147728268 -49467164 + B4A SINE B4 1 274 -18 3 1712 438 20 0 0 chr1 147728273 147728324 -49467108 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1712 26 0 0 0 chr1 147728507 147728533 -49466899 + AT_rich Low_complexity Low_complexity 1 26 0 3 1712 908 232 183 111 chr1 147728690 147729034 -49466398 + ORR1D1 LTR MaLR 6 374 0 3 1712 24 32 0 0 chr1 147729148 147729179 -49466253 + AT_rich Low_complexity Low_complexity 1 31 0 3 1712 5580 195 58 11 chr1 147730435 147732030 -49463402 + L1_Mur1 LINE L1 873 2542 -3344 3 1712 4071 239 51 7 chr1 147732019 147733047 -49462385 + Lx2B LINE L1 5887 6959 -41 3 1712 498 103 0 0 chr1 147733517 147733604 -49461828 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 1712 22 0 0 0 chr1 147734319 147734341 -49461091 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 213 226 19 0 chr1 147734400 147734439 -49460993 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 3 1712 3831 65 17 19 chr1 147734439 147734958 -49460474 - MURVY-LTR LTR ERV1 0 519 2 3 1712 213 226 19 0 chr1 147734958 147734971 -49460461 + (TATATG)n Simple_repeat Simple_repeat 1 13 0 3 1712 22 0 0 0 chr1 147735120 147735142 -49460290 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 216 270 0 31 chr1 147735363 147735428 -49460004 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1712 390 57 0 0 chr1 147735461 147735514 -49459918 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1712 30 59 0 0 chr1 147735562 147735613 -49459819 + AT_rich Low_complexity Low_complexity 1 51 0 3 1712 229 154 0 0 chr1 147735860 147735899 -49459533 + RMER6D LTR ERVK 249 287 -433 3 1712 242 316 132 51 chr1 147735995 147736252 -49459180 - RMER2 LTR ERV1 0 567 290 3 1712 728 230 0 7 chr1 147737086 147737235 -49458197 - B1_Mur3 SINE Alu -1 148 1 3 1712 342 0 0 0 chr1 147737260 147737298 -49458134 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 3 1712 275 369 0 9 chr1 147737453 147737565 -49457867 + PB1D10 SINE Alu 5 115 -2 3 1712 1042 219 47 9 chr1 147737750 147737962 -49457470 - URR1B DNA MER1_type 0 225 6 3 1712 357 228 19 3 chr1 147738448 147738549 -49456883 + Lx6 LINE L1 6542 6655 -1041 3 1712 270 0 0 0 chr1 147738563 147738593 -49456839 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1712 597 199 0 0 chr1 147738593 147738739 -49456693 + GA-rich Low_complexity Low_complexity 3 148 0 3 1712 744 222 49 36 chr1 147738752 147738963 -49456469 + Lx6 LINE L1 6695 6928 -545 3 1712 759 22 0 0 chr1 147740781 147740870 -49454562 + (TTC)n Simple_repeat Simple_repeat 2 90 0 3 1712 1146 63 0 0 chr1 147740873 147741016 -49454416 - B1_Mus1 SINE Alu -4 144 2 3 1712 219 36 0 0 chr1 147741191 147741219 -49454213 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1712 22 35 0 0 chr1 147741691 147741720 -49453712 + AT_rich Low_complexity Low_complexity 1 29 0 3 1712 57 95 0 0 chr1 147741840 147742009 -49453423 + AT_rich Low_complexity Low_complexity 1 169 0 3 1712 360 293 30 96 chr1 147742055 147742285 -49453147 - Lx7 LINE L1 -1870 5826 5612 3 1712 239 323 121 0 chr1 147743635 147743759 -49451673 - MLT1A0 LTR MaLR 0 365 227 3 1712 432 0 0 0 chr1 147743822 147743870 -49451562 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1712 2108 188 114 42 chr1 147743870 147744154 -49451278 + RLTR25B LTR ERVK 308 613 -415 3 1712 369 0 0 0 chr1 147744154 147744195 -49451237 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3 1712 2108 188 114 42 chr1 147744195 147744421 -49451011 + RLTR25B LTR ERVK 614 855 -173 3 1712 647 247 85 68 chr1 147744806 147745041 -49450391 + RLTR25B LTR ERVK 790 1028 0 3 1712 354 217 36 0 chr1 147745044 147745127 -49450305 - RMER6A LTR ERVK -22 734 649 3 1712 31 0 0 0 chr1 147745127 147745158 -49450274 + AT_rich Low_complexity Low_complexity 1 31 0 3 1712 361 220 44 0 chr1 147745158 147745249 -49450183 - Lx3B LINE L1 -8 6965 6871 3 1712 5595 170 29 7 chr1 147745250 147746310 -49449122 + Lx2 LINE L1 5914 6997 0 3 1712 6090 189 28 20 chr1 147746684 147748367 -49447065 - Lx2B LINE L1 -23 6977 5272 3 1712 219 36 0 0 chr1 147748367 147748395 -49447037 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1712 3601 167 9 16 chr1 147748395 147748452 -49446980 - Lx2B LINE L1 -606 5271 5210 3 1712 324 0 0 0 chr1 147749797 147749833 -49445599 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 3 1712 3230 271 69 37 chr1 147749849 147750475 -49444957 - Lx6 LINE L1 -222 7238 6608 3 1712 192 40 0 0 chr1 147750475 147750500 -49444932 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1712 3230 271 69 37 chr1 147750500 147750757 -49444675 - Lx6 LINE L1 -853 6607 6324 3 1712 2258 165 188 91 chr1 147750757 147751033 -49444399 + RMER6C LTR ERVK 1 333 -357 3 1712 405 0 0 0 chr1 147751033 147751078 -49444354 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1712 216 67 0 0 chr1 147751078 147751107 -49444325 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1712 543 31 0 0 chr1 147751107 147751171 -49444261 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1712 2258 165 188 91 chr1 147751171 147751520 -49443912 + RMER6C LTR ERVK 334 687 -3 3 1712 3230 271 69 37 chr1 147751520 147751660 -49443772 - Lx6 LINE L1 -1137 6323 6182 3 1712 1251 56 0 0 chr1 147751664 147751824 -49443608 + (TC)n Simple_repeat Simple_repeat 2 161 0 3 1712 252 192 19 0 chr1 147752059 147752111 -49443321 - L2 LINE L2 -2072 1347 1295 3 1712 235 281 53 91 chr1 147754929 147755172 -49440260 - MamRep434 DNA TcMar -59 367 134 3 1712 405 70 0 0 chr1 147755234 147755291 -49440141 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1712 180 0 0 0 chr1 147755725 147755745 -49439687 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 3 1712 664 329 72 18 chr1 147756643 147757153 -49438279 - L1M2 LINE L1 -1153 4990 4453 3 1712 309 295 90 0 chr1 147757294 147757450 -49437982 - Lx9 LINE L1 -154 7490 7321 3 1712 252 0 0 0 chr1 147757480 147757508 -49437924 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1712 228 217 21 11 chr1 147757731 147757824 -49437608 + (TA)n Simple_repeat Simple_repeat 2 95 0 3 1712 183 129 0 0 chr1 147757876 147757907 -49437525 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1712 2876 97 0 27 chr1 147759531 147759943 -49435489 - MTB_Mm LTR MaLR -6 401 1 3 1712 725 74 0 69 chr1 147760644 147760760 -49434672 - BC1_Mm scRNA scRNA -42 110 3 3 1712 591 117 75 0 chr1 147760818 147760912 -49434520 + RMER6C LTR ERVK 1 101 -619 3 1712 1364 195 43 62 chr1 147760926 147761298 -49434134 + RMER6C LTR ERVK 326 690 0 3 1712 330 276 101 54 chr1 147761489 147761728 -49433704 - L1MC1 LINE L1 -1773 6012 5762 3 1712 1995 217 25 5 chr1 147761752 147762145 -49433287 + MTC LTR MaLR 1 401 -20 3 1712 21 36 0 0 chr1 147762359 147762387 -49433045 + AT_rich Low_complexity Low_complexity 1 28 0 3 1712 24 0 0 0 chr1 147762667 147762691 -49432741 + AT_rich Low_complexity Low_complexity 1 24 0 3 1712 897 10 0 10 chr1 147762916 147763019 -49432413 + L1Md_A LINE L1 5485 5586 -297 3 1712 9046 1 0 0 chr1 147763019 147764015 -49431417 + L1Md_A LINE L1 5587 6582 0 3 1712 22 0 0 0 chr1 147764015 147764037 -49431395 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 310 219 0 0 chr1 147764230 147764294 -49431138 - RLTR21 LTR ERVK -1495 77 14 3 1712 234 111 0 0 chr1 147764296 147764332 -49431100 - RLTR21 LTR ERVK -1536 36 1 3 1712 7312 149 42 29 chr1 147764659 147766165 -49429267 - Lx3C LINE L1 -1 6975 5454 3 1712 267 372 90 70 chr1 147767209 147767677 -49427755 + MLT1E1A LTR MaLR 176 652 -28 3 1712 289 294 0 10 chr1 147768224 147768327 -49427105 - Lx9 LINE L1 -5 7639 7538 3 1712 1564 270 33 51 chr1 147768324 147768932 -49426500 + Lx9 LINE L1 6922 7518 -126 3 1712 219 291 0 18 chr1 147769352 147769408 -49426024 + polypurine Low_complexity Low_complexity 3 57 0 3 1712 22 35 0 0 chr1 147769455 147769484 -49425948 + AT_rich Low_complexity Low_complexity 1 29 0 3 1712 22 0 0 0 chr1 147769752 147769774 -49425658 + AT_rich Low_complexity Low_complexity 1 22 0 3 1712 795 95 63 0 chr1 147770458 147770584 -49424848 - L1_Mus2 LINE L1 0 6566 6433 3 1712 1278 82 17 108 chr1 147770584 147770815 -49424617 + L1_Mus2 LINE L1 6221 6430 -136 3 1712 486 297 137 8 chr1 147771751 147771992 -49423440 + MLT1B LTR MaLR 1 272 -118 3 1712 311 27 77 39 chr1 147772386 147772464 -49422968 + (CAAAAA)n Simple_repeat Simple_repeat 2 82 0 3 1712 22 35 0 0 chr1 147772505 147772534 -49422898 + AT_rich Low_complexity Low_complexity 1 29 0 3 1712 382 205 25 13 chr1 147774224 147774303 -49421129 + Lx6 LINE L1 6807 6886 -574 4 1712 442 194 170 7 chr1 147774301 147774436 -49420996 + Lx6 LINE L1 7136 7292 -168 4 1712 229 215 140 0 chr1 147774602 147774695 -49420737 + Lx8 LINE L1 7353 7458 -15 4 1712 4395 137 23 4 chr1 147774977 147775672 -49419760 - Lx3A LINE L1 -7 6974 6267 4 1712 1417 174 10 5 chr1 147775769 147776025 -49419407 + Lx4A LINE L1 6257 6513 -545 4 1712 4051 82 2 4 chr1 147776037 147776587 -49418845 + L1_Mus2 LINE L1 6017 6565 -1 4 1712 2753 184 29 18 chr1 147776589 147777137 -49418295 + Lx4A LINE L1 6503 7056 -2 4 1712 268 307 48 78 chr1 147777353 147777519 -49417913 - RLTR8 LTR ERVK 0 365 205 4 1712 303 260 0 64 chr1 147777935 147778013 -49417419 + HAL1-3A_ME LINE L1 1940 2012 -846 4 1712 372 174 0 0 chr1 147778015 147778107 -49417325 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1712 361 341 93 7 chr1 147778123 147778262 -49417170 - B3 SINE B2 -6 210 60 4 1712 22 35 0 0 chr1 147779051 147779080 -49416352 + AT_rich Low_complexity Low_complexity 1 29 0 4 1712 914 41 25 0 chr1 147780044 147780165 -49415267 + (TTCTC)n Simple_repeat Simple_repeat 2 125 0 4 1712 416 336 113 49 chr1 147780165 147780509 -49414923 - Lx8 LINE L1 -54 7419 7054 4 1712 180 0 0 0 chr1 147781559 147781579 -49413853 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1712 1703 217 18 28 chr1 147782262 147782660 -49412772 + ORR1B1 LTR MaLR 1 394 0 4 1712 1063 217 14 5 chr1 147782660 147782878 -49412554 + ORR1B1-int LTR MaLR 1 220 -1289 4 1712 234 305 0 0 chr1 147782877 147782936 -49412496 + ORR1B1-int LTR MaLR 932 990 -519 4 1712 840 20 0 0 chr1 147782956 147783054 -49412378 + (TTTC)n Simple_repeat Simple_repeat 2 99 0 4 1712 485 270 62 0 chr1 147783425 147783573 -49411859 - MT2B LTR ERVL -106 495 349 4 1712 1326 104 47 14 chr1 147783587 147783801 -49411631 - Lx2 LINE L1 -2 6995 6775 4 1712 6607 143 19 9 chr1 147783801 147785035 -49410397 - Lx2 LINE L1 -354 6643 5404 4 1712 3249 44 3 0 chr1 147785055 147785439 -49409993 + IAPEY_LTR LTR ERVK 1 385 0 4 1712 911 280 12 33 chr1 147785456 147785700 -49409732 - Lx2B LINE L1 -344 6656 6418 4 1712 453 103 0 0 chr1 147785827 147785895 -49409537 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1712 24 67 0 0 chr1 147786327 147786372 -49409060 + AT_rich Low_complexity Low_complexity 1 45 0 4 1712 197 77 0 49 chr1 147787294 147787335 -49408097 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 4 1712 1278 286 79 0 chr1 147787335 147787688 -49407744 + MTD LTR MaLR 20 400 -19 4 1712 1079 99 0 0 chr1 147787763 147787904 -49407528 - B1_Mus1 SINE Alu -7 141 1 4 1712 234 320 7 113 chr1 147788006 147788147 -49407285 + MLT1F-int LTR MaLR 1309 1434 -55 4 1712 218 196 0 0 chr1 147788539 147788585 -49406847 + A-rich Low_complexity Low_complexity 3 48 0 4 1712 760 225 199 31 chr1 147788688 147788973 -49406459 - RMER6C LTR ERVK -4 686 368 4 1712 34063 88 5 8 chr1 147790335 147796474 -49398958 - L1Md_F2 LINE L1 0 6582 467 4 1712 21 57 0 0 chr1 147796631 147796666 -49398766 + AT_rich Low_complexity Low_complexity 1 35 0 4 1712 568 277 7 28 chr1 147796719 147796860 -49398572 - B1_Mur1 SINE Alu -5 144 7 4 1712 734 170 7 7 chr1 147797169 147797317 -49398115 - Lx LINE L1 -7 6647 6500 4 1712 920 95 0 7 chr1 147798017 147798155 -49397277 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 4 1712 33 43 0 0 chr1 147798251 147798298 -49397134 + AT_rich Low_complexity Low_complexity 1 47 0 4 1712 522 46 0 0 chr1 147798586 147798651 -49396781 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1712 623 0 39 0 chr1 147799325 147799402 -49396030 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 4 1712 528 16 0 0 chr1 147799402 147799462 -49395970 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1712 23 68 0 0 chr1 147799823 147799867 -49395565 + AT_rich Low_complexity Low_complexity 1 44 0 4 1712 23 0 0 0 chr1 147800977 147801000 -49394432 + AT_rich Low_complexity Low_complexity 1 23 0 4 1712 548 258 13 3 chr1 147801185 147801344 -49394088 + Lx7 LINE L1 6725 6896 -577 4 1712 543 240 30 136 chr1 147801344 147801542 -49393890 + MT2A LTR ERVL 1 177 -356 4 1712 4104 253 37 25 chr1 147801542 147803079 -49392353 + MERVL_2A-int LTR ERVL 630 2652 -3109 4 1712 180 0 0 0 chr1 147803079 147803099 -49392333 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1712 1831 268 33 14 chr1 147803099 147803180 -49392252 + MERVL_2A-int LTR ERVL 2653 2733 -3028 4 1712 695 230 76 67 chr1 147803180 147803454 -49391978 + MT2A LTR ERVL 93 476 -125 4 1712 671 235 87 0 chr1 147803468 147803617 -49391815 - ORR1D1 LTR MaLR -212 162 1 4 1712 23 0 0 0 chr1 147803670 147803693 -49391739 + AT_rich Low_complexity Low_complexity 1 23 0 4 1712 22 0 0 0 chr1 147804114 147804136 -49391296 + AT_rich Low_complexity Low_complexity 1 22 0 4 1712 3885 76 17 8 chr1 147804289 147804903 -49390529 + L1_Mus2 LINE L1 5486 6104 -462 4 1712 717 291 166 31 chr1 147804980 147805366 -49390066 + RLTR45 LTR ERVK 45 482 0 4 1712 3405 102 43 4 chr1 147805366 147805877 -49389555 + L1_Mus3 LINE L1 6099 6629 -9 4 1712 27 49 0 0 chr1 147807145 147807186 -49388246 + AT_rich Low_complexity Low_complexity 1 41 0 4 1712 22 56 0 0 chr1 147807229 147807265 -49388167 + AT_rich Low_complexity Low_complexity 1 36 0 4 1712 488 302 58 47 chr1 147807481 147807738 -49387694 + Lx9 LINE L1 7177 7436 -208 4 1712 252 0 0 0 chr1 147807766 147807794 -49387638 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1712 625 114 16 0 chr1 147807794 147807917 -49387515 + (GA)n Simple_repeat Simple_repeat 1 125 0 4 1712 2873 236 46 73 chr1 147807981 147809196 -49386236 + Lx7 LINE L1 418 1586 -4294 4 1712 375 23 0 0 chr1 147809196 147809240 -49386192 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1712 952 201 62 154 chr1 147809240 147809290 -49386142 + Lx7 LINE L1 1587 1644 -4236 4 1712 2906 269 54 22 chr1 147809265 147810206 -49385226 + Lx7 LINE L1 46 1016 -6712 4 1712 6876 230 54 29 chr1 147810201 147811933 -49383499 + Lx7 LINE L1 2897 4625 -1255 4 1712 248 77 26 0 chr1 147811933 147811972 -49383460 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1712 6876 230 54 29 chr1 147811972 147812393 -49383039 + Lx7 LINE L1 4626 5103 -777 4 1712 2123 214 39 2 chr1 147812391 147812859 -49382573 + Lx7 LINE L1 5311 5795 -85 4 1712 2133 34 0 0 chr1 147812856 147813120 -49382312 - L1Md_A LINE L1 -6243 481 218 4 1712 4143 6 34 0 chr1 147813120 147813591 -49381841 + L1Md_A LINE L1 6096 6582 0 4 1712 22 0 0 0 chr1 147813602 147813624 -49381808 + AT_rich Low_complexity Low_complexity 1 22 0 4 1712 1766 262 50 82 chr1 147813624 147814689 -49380743 + Lx7 LINE L1 5782 7469 -227 4 1712 633 14 0 0 chr1 147814689 147814763 -49380669 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1712 1193 269 55 148 chr1 147814763 147814973 -49380459 + Lx7 LINE L1 7470 7694 -2 4 1712 1173 355 18 12 chr1 147815053 147815615 -49379817 + Lx9 LINE L1 6474 7038 -606 4 1712 4724 6 0 0 chr1 147815792 147816318 -49379114 - L1Md_A LINE L1 0 6582 6057 4 1712 344 284 74 63 chr1 147816340 147816720 -49378712 - L1M2 LINE L1 -1591 4552 4169 4 1712 256 196 0 0 chr1 147816915 147816966 -49378466 + L1MC2 LINE L1 6025 6075 -269 4 1712 1547 330 50 32 chr1 147817813 147817975 -49377457 - Lx8 LINE L1 -527 6946 6779 4 1712 1166 82 0 0 chr1 147817975 147818122 -49377310 + B1_Mm SINE Alu 1 147 0 4 1712 1547 330 50 32 chr1 147818122 147818702 -49376730 - Lx8 LINE L1 -695 6778 6191 4 1712 423 0 0 0 chr1 147820655 147820702 -49374730 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1712 1076 59 0 0 chr1 147821036 147821171 -49374261 + B1_Mm SINE Alu 1 135 -12 4 1712 513 13 39 26 chr1 147821172 147821250 -49374182 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 4 1712 2196 138 14 3 chr1 147821257 147821619 -49373813 - L1_Mur1 LINE L1 -636 5250 4885 4 1712 562 294 28 0 chr1 147821610 147821787 -49373645 - Lx8 LINE L1 -568 6905 6724 4 1712 972 113 0 0 chr1 147822006 147822139 -49373293 + B1_Mus2 SINE Alu 1 133 -14 4 1712 7306 39 0 0 chr1 147822139 147823017 -49372415 + L1Md_T LINE L1 5705 6582 0 4 1712 543 297 30 18 chr1 147823206 147823374 -49372058 - MTEb LTR MaLR -209 170 1 4 1712 568 283 14 7 chr1 147823421 147823560 -49371872 - B3 SINE B2 0 216 77 4 1712 265 302 31 31 chr1 147823560 147823690 -49371742 + Lx7 LINE L1 7566 7695 -1 4 1712 1244 234 112 80 chr1 147823742 147824156 -49371276 + Lx9 LINE L1 7067 7474 -170 4 1712 333 0 0 0 chr1 147824156 147824193 -49371239 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1712 1244 234 112 80 chr1 147824193 147824331 -49371101 + Lx9 LINE L1 7475 7637 -7 4 1712 4890 136 39 44 chr1 147824348 147824534 -49370898 + Lx3C LINE L1 4991 5180 -706 4 1712 7002 71 7 0 chr1 147824534 147825421 -49370011 - RLTR13B1 LTR ERVK 0 893 1 4 1712 7221 148 30 21 chr1 147825421 147827054 -49368378 + Lx3C LINE L1 5181 6822 -154 4 1712 854 217 63 0 chr1 147827056 147827277 -49368155 + MYSERV16_I-int LTR ERVK 2087 2321 -5 4 1712 2153 222 49 21 chr1 147827278 147827812 -49367620 + RLTR20B3 LTR ERVK 29 577 0 4 1712 259 266 23 81 chr1 147827886 147827972 -49367460 - MT2B LTR ERVL -354 247 167 4 1712 365 221 0 0 chr1 147827906 147827974 -49367458 - B1_Mus2 SINE Alu -79 68 1 4 1712 1201 73 11 0 chr1 147827983 147828161 -49367271 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1712 441 181 115 21 chr1 147828171 147828267 -49367165 - B1_Mur3 SINE Alu 0 149 45 4 1712 28 0 0 0 chr1 147828518 147828546 -49366886 + AT_rich Low_complexity Low_complexity 1 28 0 4 1712 587 315 129 18 chr1 147828749 147829143 -49366289 - MamRep605 Unknown Unknown -165 711 274 4 1712 9000 7 0 0 chr1 147829160 147830395 -49365037 - L1Md_T LINE L1 0 6582 5348 4 1712 447 346 62 28 chr1 147830404 147830725 -49364707 + Lx8 LINE L1 7105 7436 -37 4 1712 25 65 0 0 chr1 147830746 147830792 -49364640 + AT_rich Low_complexity Low_complexity 1 46 0 4 1712 5556 64 6 0 chr1 147830830 147831546 -49363886 - L1Md_F2 LINE L1 0 6582 5863 4 1712 3380 60 0 0 chr1 147831546 147831979 -49363453 + L1_Mm LINE L1 4244 4676 -1207 4 1712 371 96 50 29 chr1 147832346 147832485 -49362947 + T-rich Low_complexity Low_complexity 1 142 0 4 1712 1159 88 0 0 chr1 147832486 147832633 -49362799 - B1_Mus1 SINE Alu -1 147 1 4 1712 358 365 28 51 chr1 147833640 147833854 -49361578 + Lx8 LINE L1 7109 7317 -156 4 1712 723 142 0 0 chr1 147833857 147833977 -49361455 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 4 1712 878 251 25 12 chr1 147835097 147835339 -49360093 + RMER1C Other Other 1094 1338 -4 4 1712 28 0 0 0 chr1 147835456 147835484 -49359948 + AT_rich Low_complexity Low_complexity 1 28 0 4 1712 28 48 0 0 chr1 147835940 147835982 -49359450 + AT_rich Low_complexity Low_complexity 1 42 0 4 1712 35 71 0 0 chr1 147836822 147836892 -49358540 + AT_rich Low_complexity Low_complexity 1 70 0 5 1712 314 397 75 52 chr1 147836975 147837416 -49358016 - MLT2B3 LTR ERVL -95 459 9 5 1712 22 80 0 0 chr1 147837580 147837630 -49357802 + AT_rich Low_complexity Low_complexity 1 50 0 5 1712 219 139 0 0 chr1 147837666 147837702 -49357730 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1712 272 331 43 18 chr1 147837935 147838098 -49357334 + RMER15 LTR ERVL 352 518 -57 5 1712 450 0 0 0 chr1 147838197 147838247 -49357185 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1712 618 383 87 37 chr1 147838704 147839616 -49355816 + RMER15-int LTR ERVL 630 1596 -3403 5 1712 186 43 0 0 chr1 147839616 147839639 -49355793 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1712 618 383 87 37 chr1 147839639 147839877 -49355555 + RMER15-int LTR ERVL 1597 1837 -3162 5 1712 482 289 48 87 chr1 147840370 147840601 -49354831 + RMER15-int LTR ERVL 4775 4996 -3 5 1712 477 0 0 0 chr1 147840956 147841009 -49354423 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1712 371 155 12 0 chr1 147841024 147841108 -49354324 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 1712 423 0 0 0 chr1 147841108 147841155 -49354277 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1712 266 221 15 0 chr1 147841158 147841226 -49354206 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 5 1712 307 39 58 0 chr1 147841456 147841508 -49353924 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 5 1712 1150 62 7 0 chr1 147841508 147841652 -49353780 - B1_Mm SINE Alu 0 147 3 5 1712 368 310 9 9 chr1 147841652 147841766 -49353666 + Lx8 LINE L1 6455 6568 -905 5 1712 382 331 38 13 chr1 147841816 147841975 -49353457 - Lx8 LINE L1 -118 7355 7193 5 1712 7456 127 86 23 chr1 147842317 147843607 -49351825 + Lx3A LINE L1 5602 6972 -9 5 1712 35 63 0 0 chr1 147843732 147843795 -49351637 + AT_rich Low_complexity Low_complexity 1 63 0 5 1712 2365 98 49 8 chr1 147844759 147845129 -49350303 - Lx2 LINE L1 -12 6985 6601 5 1712 932 284 42 26 chr1 147845563 147846019 -49349413 - L1_Mur3 LINE L1 -987 4893 4431 5 1712 459 301 52 15 chr1 147846338 147846473 -49348959 + RSINE1 SINE B4 4 143 -22 5 1712 251 312 0 0 chr1 147846631 147846695 -49348737 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1712 238 216 20 0 chr1 147846701 147846752 -49348680 - L1M4 LINE L1 -2459 3687 3636 5 1712 1466 243 109 20 chr1 147847294 147847922 -49347510 + Lx7 LINE L1 5535 6237 -1459 5 1712 5283 204 60 65 chr1 147847925 147848283 -49347149 + RMER12 LTR ERVK 1 377 -945 5 1712 6596 80 15 0 chr1 147848283 147849163 -49346269 + RLTR13B1 LTR ERVK 1 893 0 5 26 5283 204 60 65 chr1 147849163 147850131 -49345301 + RMER12 LTR ERVK 378 1321 -1 5 1713 1353 287 32 7 chr1 147850132 147850536 -49344896 + Lx7 LINE L1 6224 6637 -823 5 1713 315 0 0 0 chr1 147850568 147850603 -49344829 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1713 233 97 0 0 chr1 147851242 147851273 -49344159 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1713 402 189 28 0 chr1 147851273 147851379 -49344053 + (TA)n Simple_repeat Simple_repeat 2 110 0 5 1713 35289 35 1 0 chr1 147851475 147857321 -49338111 + L1Md_T LINE L1 1 5589 -297 5 1713 8979 6 0 0 chr1 147857321 147858317 -49337115 + L1Md_T LINE L1 5590 6585 0 5 1713 231 36 0 0 chr1 147858398 147858426 -49337006 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1713 387 98 0 0 chr1 147858779 147858840 -49336592 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1713 1236 263 89 3 chr1 147859201 147859525 -49335907 + ORR1B2 LTR MaLR 2 353 -14 5 1713 459 371 104 22 chr1 147860515 147860918 -49334514 + L1MCa LINE L1 45 480 -6028 5 1713 840 244 67 0 chr1 147860920 147861145 -49334287 + Lx2A1 LINE L1 6769 7008 0 5 1713 1033 107 11 22 chr1 147861361 147861542 -49333890 - L1_Mus3 LINE L1 -2 6636 6458 5 1713 2119 169 14 60 chr1 147861787 147862272 -49333160 + L1VL4 LINE L1 373 835 -5467 5 1713 2538 228 78 43 chr1 147862274 147863155 -49332277 + L1Md_F LINE L1 275 1163 -5475 5 1713 7833 128 5 8 chr1 147863126 147864427 -49331005 + L1Md_F LINE L1 1367 2664 -3219 5 1713 315 314 12 0 chr1 147864427 147864513 -49330919 - MTD LTR MaLR -332 87 1 5 1713 668 274 94 10 chr1 147864694 147864897 -49330535 + MTD LTR MaLR 10 229 -190 5 1713 478 163 0 42 chr1 147865405 147865501 -49329931 + RLTR22_Mur LTR ERVK 245 336 -1512 5 1713 39388 35 3 6 chr1 147865518 147871921 -49323511 - L1Md_A LINE L1 -1 6581 200 5 1713 1833 109 91 22 chr1 147871980 147872298 -49323134 - Lx3C LINE L1 -1044 5932 5593 5 1713 418 356 21 50 chr1 147872602 147872883 -49322549 - Lx8 LINE L1 -325 7148 6876 5 1713 736 92 0 0 chr1 147873068 147873166 -49322266 + BC1_Mm scRNA scRNA 2 99 -53 5 1713 288 77 0 0 chr1 147874205 147874244 -49321188 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 5 1713 666 355 61 0 chr1 147875426 147875705 -49319727 - Lx8 LINE L1 -350 7123 6828 5 1713 22 70 0 0 chr1 147875896 147875939 -49319493 + AT_rich Low_complexity Low_complexity 1 43 0 5 1713 351 367 91 23 chr1 147877697 147877962 -49317470 + L1MD1 LINE L1 5639 5921 -321 5 1713 1694 134 94 0 chr1 147877977 147878276 -49317156 + IAPEY3_LTR LTR ERVK 1 327 -5 5 1713 1488 198 31 34 chr1 147878281 147878631 -49316801 - RMER6C LTR ERVK -2 688 340 5 1713 835 188 188 0 chr1 147878621 147878813 -49316619 - RMER6C LTR ERVK -462 228 1 5 1713 252 0 0 0 chr1 147879049 147879077 -49316355 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1713 415 353 73 24 chr1 147879133 147879339 -49316093 + B4 SINE B4 73 288 -4 5 1713 27 29 0 0 chr1 147879456 147879490 -49315942 + AT_rich Low_complexity Low_complexity 1 34 0 5 1713 5396 185 47 49 chr1 147879707 147879805 -49315627 + RMER12B LTR ERVK 1 66 -1338 5 1713 2983 69 5 0 chr1 147879805 147880198 -49315234 - L1Md_T LINE L1 0 6582 6188 5 1713 5396 185 47 49 chr1 147880198 147881314 -49314118 + RMER12B LTR ERVK 67 1213 -191 5 1713 261 322 0 0 chr1 147881989 147882048 -49313384 - B3 SINE B2 -57 159 101 5 1713 579 122 0 0 chr1 147882172 147882262 -49313170 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 5 1713 993 110 14 0 chr1 147882298 147882443 -49312989 - B1_Mus1 SINE Alu 0 148 2 5 1713 438 333 24 19 chr1 147883918 147884126 -49311306 + Lx9 LINE L1 7191 7399 -245 5 1713 297 261 186 21 chr1 147884520 147884665 -49310767 - LTR65 LTR ERV1 -499 170 2 5 1713 21 0 0 0 chr1 147885110 147885131 -49310301 + AT_rich Low_complexity Low_complexity 1 21 0 5 1713 4303 170 29 7 chr1 147885286 147886094 -49309338 - Lx2B LINE L1 -1 6999 6175 5 1713 3877 181 22 7 chr1 147886094 147887058 -49308374 - Lx2B LINE L1 -1011 5989 5005 5 1713 1286 41 18 0 chr1 147887085 147887254 -49308178 - L1Md_A LINE L1 -3 6579 6408 5 1713 601 87 146 0 chr1 147887274 147887377 -49308055 - Lx LINE L1 0 6654 6537 5 1713 2110 95 78 0 chr1 147887372 147887678 -49307754 - Lx LINE L1 -234 6420 6091 5 1713 445 320 54 16 chr1 147887735 147888107 -49307325 - L1MA6 LINE L1 -384 5916 5531 5 1713 203 133 22 0 chr1 147888190 147888235 -49307197 + T-rich Low_complexity Low_complexity 3 48 0 5 1713 426 85 0 0 chr1 147888232 147888291 -49307141 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 5 1713 380 262 9 27 chr1 147888292 147888402 -49307030 + MTD LTR MaLR 13 120 -301 5 1713 186 43 0 0 chr1 147888402 147888425 -49307007 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1713 2758 13 0 0 chr1 147888466 147888781 -49306651 - L1Md_T LINE L1 0 6582 6268 5 1713 871 262 64 57 chr1 147888781 147889069 -49306363 + MTD LTR MaLR 120 411 -8 5 1713 1787 289 39 66 chr1 147889072 147889710 -49305722 + MTC-int LTR MaLR 363 983 -275 5 1713 1244 284 25 11 chr1 147890094 147890447 -49304985 - ORR1D2 LTR MaLR -12 358 1 5 1713 450 260 0 0 chr1 147890925 147891021 -49304411 + MTEa LTR MaLR 5 100 -279 5 1713 412 282 45 84 chr1 147890989 147891144 -49304288 + MTEa LTR MaLR 216 364 -15 5 1713 298 295 50 68 chr1 147891239 147891519 -49303913 - L1MA9 LINE L1 -196 6116 5842 5 1713 356 326 65 22 chr1 147892557 147892695 -49302737 + MTD LTR MaLR 22 165 -254 5 1713 632 285 41 110 chr1 147892627 147893048 -49302384 + MT2A LTR ERVL 68 475 0 5 1713 207 200 0 0 chr1 147893689 147893734 -49301698 + A-rich Low_complexity Low_complexity 2 46 0 5 1713 276 133 0 0 chr1 147894105 147894165 -49301267 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1713 915 290 42 27 chr1 147894512 147894919 -49300513 + Lx9 LINE L1 7231 7643 -1 5 1713 441 0 0 0 chr1 147895005 147895054 -49300378 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1713 348 88 0 0 chr1 147895057 147895114 -49300318 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1713 533 301 38 24 chr1 147895122 147895333 -49300099 + B3 SINE B2 3 216 0 5 1713 279 359 51 62 chr1 147895357 147895535 -49299897 - LTR52 LTR ERVL -3 418 243 5 1713 200 170 0 36 chr1 147895651 147895706 -49299726 + A-rich Low_complexity Low_complexity 2 54 0 5 1713 23 0 0 0 chr1 147896049 147896072 -49299360 + AT_rich Low_complexity Low_complexity 1 23 0 5 1713 21 0 0 0 chr1 147896924 147896945 -49298487 + AT_rich Low_complexity Low_complexity 1 21 0 5 1713 385 327 73 25 chr1 147897065 147897269 -49298163 + B3 SINE B2 3 216 0 5 1713 786 293 19 0 chr1 147897601 147897806 -49297626 + B3 SINE B2 8 216 0 5 1713 886 63 16 0 chr1 147897944 147898070 -49297362 + (TTC)n Simple_repeat Simple_repeat 3 130 0 5 1713 633 80 0 0 chr1 147898070 147898158 -49297274 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1713 23 33 0 0 chr1 147898874 147898904 -49296528 + AT_rich Low_complexity Low_complexity 1 30 0 5 1713 203 369 67 50 chr1 147900117 147900414 -49295018 - L2a LINE L2 -67 3359 3058 5 1713 216 204 0 0 chr1 147901064 147901108 -49294324 + T-rich Low_complexity Low_complexity 1 44 0 5 1713 349 312 56 8 chr1 147901204 147901330 -49294102 - B1F SINE Alu 0 149 18 5 1713 3217 216 178 9 chr1 147901420 147901748 -49293684 - L1_Mur2 LINE L1 -940 4940 4468 5 1713 6169 101 10 0 chr1 147901748 147902621 -49292811 - L1_Mus3 LINE L1 -4 6634 5753 5 1713 3225 196 47 6 chr1 147902621 147903374 -49292058 - L1_Mur2 LINE L1 -1413 4467 3677 5 1713 5190 195 67 40 chr1 147903365 147904914 -49290518 + Lx4B LINE L1 5424 7036 -22 5 1713 270 0 0 0 chr1 147904914 147904944 -49290488 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1713 245 242 0 21 chr1 147905013 147905106 -49290326 + Lx6 LINE L1 7370 7460 0 5 1713 233 200 0 58 chr1 147905338 147905407 -49290025 + A-rich Low_complexity Low_complexity 6 70 0 5 1713 696 286 117 0 chr1 147905701 147905897 -49289535 + MTD LTR MaLR 170 388 -31 6 1713 288 0 0 0 chr1 147906156 147906188 -49289244 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1713 306 0 0 0 chr1 147906188 147906221 -49289211 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1713 407 242 115 47 chr1 147907126 147907317 -49288115 + L1M3 LINE L1 5606 5809 -482 6 1713 3466 268 25 14 chr1 147907642 147908548 -49286884 - Lx9 LINE L1 -181 7463 6548 6 1713 30952 84 7 3 chr1 147909042 147914094 -49281338 + L1Md_F2 LINE L1 515 5585 -298 6 1713 7609 51 20 1 chr1 147914095 147915071 -49280361 + L1Md_F2 LINE L1 5587 6581 -1 6 1713 260 291 23 11 chr1 147915531 147915618 -49279814 + Lx8 LINE L1 7265 7352 -121 6 1713 24 32 0 0 chr1 147915663 147915694 -49279738 + AT_rich Low_complexity Low_complexity 1 31 0 6 1713 276 131 29 14 chr1 147916025 147916095 -49279337 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1713 492 18 0 0 chr1 147916098 147916155 -49279277 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1713 325 355 42 38 chr1 147917401 147917641 -49277791 - Lx8 LINE L1 -16 7457 7217 6 1713 26 50 0 0 chr1 147917683 147917723 -49277709 + AT_rich Low_complexity Low_complexity 1 40 0 6 1713 369 375 16 8 chr1 147917733 147917854 -49277578 - RSINE1 SINE B4 -2 163 42 6 1713 431 317 28 7 chr1 147919225 147919368 -49276064 - RMER15 LTR ERVL -16 559 414 6 1713 429 20 0 0 chr1 147919462 147919512 -49275920 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1713 889 179 19 0 chr1 147919810 147919972 -49275460 + Lx6 LINE L1 5441 5605 -275 6 1713 3174 277 99 14 chr1 147919971 147921016 -49274416 + Lx6 LINE L1 5882 7014 -446 6 1713 555 43 0 0 chr1 147921017 147921087 -49274345 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 6 1713 1734 198 43 6 chr1 147921096 147921447 -49273985 - ORR1B2 LTR MaLR -3 364 1 6 1713 236 153 63 63 chr1 147922149 147922212 -49273220 - MLT1J LTR MaLR -340 172 110 6 1713 227 242 81 0 chr1 147922222 147922284 -49273148 - MLT1L LTR MaLR -425 185 119 6 1713 569 327 40 22 chr1 147922498 147922720 -49272712 + B4A SINE B4 2 227 -65 6 1713 25 0 0 0 chr1 147922879 147922904 -49272528 + AT_rich Low_complexity Low_complexity 1 25 0 6 1713 1180 293 83 38 chr1 147923852 147924452 -49270980 - Lx8 LINE L1 -4 7469 6843 6 1713 322 316 141 60 chr1 147924623 147924808 -49270624 - B3A SINE B2 -4 212 13 6 1713 267 31 0 0 chr1 147924900 147924932 -49270500 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 6 1713 1022 213 147 16 chr1 147924932 147925190 -49270242 - Lx4B LINE L1 -16 7042 6751 6 1713 1831 162 30 21 chr1 147925191 147925519 -49269913 - L1_Mur2 LINE L1 -107 5770 5440 6 1713 240 59 0 0 chr1 147925519 147925553 -49269879 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 6 1713 452 326 30 40 chr1 147925589 147925892 -49269540 - L1MB2 LINE L1 -286 5897 5598 6 1713 265 100 20 20 chr1 147927046 147927097 -49268335 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1713 204 179 0 0 chr1 147928494 147928533 -49266899 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 6 1713 619 379 20 41 chr1 147928796 147929088 -49266344 - B4 SINE B4 -2 290 5 6 1713 236 322 8 55 chr1 147929183 147929311 -49266121 + RMER12 LTR ERVK 715 836 -486 6 1713 660 251 48 0 chr1 147929644 147929811 -49265621 - Lx9 LINE L1 -446 7198 7024 6 1713 432 126 0 0 chr1 147930686 147930773 -49264659 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1713 928 55 0 0 chr1 147930939 147931049 -49264383 - L1_Mus1 LINE L1 -121 6446 6337 6 1713 1119 58 0 0 chr1 147931042 147931181 -49264251 - L1Md_F2 LINE L1 -293 6289 6151 6 1713 586 139 0 24 chr1 147931181 147931306 -49264126 + L1Md_F3 LINE L1 6463 6584 0 6 1713 2940 107 2 0 chr1 147931826 147932248 -49263184 - L1_Mus1 LINE L1 -359 5524 5102 6 1713 7414 86 0 1 chr1 147932244 147933277 -49262155 + L1_Mus1 LINE L1 5535 6566 -1 6 1713 703 229 124 24 chr1 147933280 147933530 -49261902 + L1MA8 LINE L1 5891 6165 -126 6 1713 1497 199 144 3 chr1 147933740 147934088 -49261344 - Lx3C LINE L1 -2 6974 6578 6 1713 2423 206 57 9 chr1 147934088 147934617 -49260815 + RMER6D LTR ERVK 167 720 0 6 1713 343 259 90 7 chr1 147934677 147934826 -49260606 + MTEb LTR MaLR 207 377 -2 6 1713 2422 235 10 36 chr1 147935002 147935577 -49259855 - RLTR20B2 LTR ERVK 0 560 1 6 1713 22 0 0 0 chr1 147935774 147935796 -49259636 + AT_rich Low_complexity Low_complexity 1 22 0 6 1713 577 303 51 19 chr1 147937334 147937590 -49257842 - L1MA5A LINE L1 -372 5925 5662 6 1713 22287 37 1 0 chr1 147937603 147940329 -49255103 - L1_Mm LINE L1 -907 4976 2250 6 1713 2018 26 0 0 chr1 147940306 147940539 -49254893 + L1Md_T LINE L1 5354 5586 -297 6 1713 8300 34 2 3 chr1 147940539 147941556 -49253876 + L1Md_T LINE L1 5587 6582 0 6 1713 659 235 35 63 chr1 147942126 147942380 -49253052 - L1MC3 LINE L1 -125 7660 7414 6 1713 748 284 241 54 chr1 147942389 147943099 -49252333 - L1MC3 LINE L1 -503 7282 6451 6 1713 2212 208 44 33 chr1 147943099 147943621 -49251811 + RLTR11A LTR ERVK 1 528 0 6 1713 633 327 127 33 chr1 147943621 147944173 -49251259 - L1MC3 LINE L1 -1335 6450 5836 6 1713 331 365 59 61 chr1 147944259 147944770 -49250662 - L1MC3 LINE L1 -892 5254 4745 6 1713 1830 220 14 56 chr1 147945164 147945593 -49249839 + MTC LTR MaLR 3 413 -8 6 1713 489 336 79 32 chr1 147945605 147945885 -49249547 - L1MC3 LINE L1 -2533 3613 3321 6 1713 337 286 21 42 chr1 147946139 147946234 -49249198 - RSINE1 SINE B4 -25 140 48 6 1713 420 281 65 29 chr1 147946461 147946600 -49248832 - B1F SINE Alu 0 149 6 6 1713 188 35 35 0 chr1 147946727 147946756 -49248676 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1713 2499 200 85 50 chr1 147946895 147947648 -49247784 - Lx LINE L1 -7 6647 5869 6 1713 2679 43 3 14 chr1 147947648 147948051 -49247381 - L1Md_F3 LINE L1 0 6584 6215 6 1713 23 0 0 0 chr1 147948753 147948776 -49246656 + AT_rich Low_complexity Low_complexity 1 23 0 6 1713 21 36 0 0 chr1 147948900 147948928 -49246504 + AT_rich Low_complexity Low_complexity 1 28 0 6 1713 23 0 0 0 chr1 147949112 147949135 -49246297 + AT_rich Low_complexity Low_complexity 1 23 0 6 1713 293 273 39 44 chr1 147949142 147949345 -49246087 - Lx7 LINE L1 -3 7693 7492 6 1713 302 304 38 99 chr1 147949355 147949567 -49245865 + L1M4b LINE L1 1727 1925 -5409 6 1713 583 129 45 8 chr1 147949567 147949683 -49245749 + GA-rich Low_complexity Low_complexity 4 122 0 6 1713 1171 94 0 11 chr1 147949683 147949865 -49245567 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1713 583 129 45 8 chr1 147949865 147949881 -49245551 + polypurine Low_complexity Low_complexity 123 139 0 6 1713 1212 106 0 0 chr1 147949883 147950062 -49245370 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1713 340 293 9 0 chr1 147950075 147950191 -49245241 - Lx7 LINE L1 -355 7341 7225 6 1713 1405 92 58 5 chr1 147950220 147950427 -49245005 - MTA_Mm LTR MaLR 0 396 179 6 1713 5692 43 9 1 chr1 147950449 147951186 -49244246 - L1Md_F3 LINE L1 -20 6564 5822 6 1713 2624 65 3 0 chr1 147951186 147951511 -49243921 - IAPLTR3 LTR ERVK 0 326 1 6 1713 11999 37 9 6 chr1 147951511 147953004 -49242428 - IAPLTR3-int LTR ERVK -20 6801 5304 6 1713 10720 59 30 3 chr1 147953002 147954436 -49240996 - IAPLTR3-int LTR ERVK -5349 1472 1 6 1713 2605 58 3 0 chr1 147954436 147954761 -49240671 - IAPLTR3 LTR ERVK 0 326 1 6 1713 33160 81 10 8 chr1 147954761 147960352 -49235080 - L1Md_F3 LINE L1 -56 5827 233 6 1713 1435 73 0 10 chr1 147960365 147960558 -49234874 - MTA_Mm LTR MaLR -205 191 1 6 1713 411 344 52 24 chr1 147960560 147960808 -49234624 - ORR1E LTR MaLR -111 259 1 6 1713 248 53 26 0 chr1 147960842 147960880 -49234552 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1713 251 292 59 44 chr1 147960895 147960963 -49234469 + ID4_ SINE ID 3 71 -12 6 1713 2096 134 6 3 chr1 147961041 147961393 -49234039 - L1_Mus4 LINE L1 -44 6592 6240 6 1713 706 89 0 0 chr1 147961392 147961493 -49233939 + L1_Mus4 LINE L1 6131 6231 -405 6 1713 289 270 0 51 chr1 147961605 147961683 -49233749 + ORR1E LTR MaLR 282 355 -4 6 1713 219 219 24 12 chr1 147962055 147962194 -49233238 + (TTTA)n Simple_repeat Simple_repeat 1 140 0 6 1713 5647 85 0 0 chr1 147962207 147963007 -49232425 + L1Md_F2 LINE L1 4779 5578 -305 6 1713 7627 73 0 7 chr1 147963009 147964012 -49231420 + L1Md_F2 LINE L1 5587 6582 0 6 1713 210 91 0 0 chr1 147964022 147964055 -49231377 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1713 498 260 34 7 chr1 147964057 147964204 -49231228 + Lx7 LINE L1 6919 7069 -627 6 1713 472 128 0 93 chr1 147964227 147964313 -49231119 - MTA_Mm LTR MaLR -130 266 189 6 1713 1054 64 7 0 chr1 147964275 147964416 -49231016 + MTA_Mm LTR MaLR 255 396 0 6 1713 7156 92 8 81 chr1 147964418 147965601 -49229831 + MTA_Mm-int LTR MaLR 3 1098 0 6 1713 3158 58 2 8 chr1 147965601 147965999 -49229433 + MTA_Mm LTR MaLR 1 396 0 6 1713 370 65 32 0 chr1 147967344 147967406 -49228026 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1713 522 0 0 0 chr1 147967416 147967474 -49227958 + (GGAAA)n Simple_repeat Simple_repeat 3 60 0 6 1713 841 294 51 75 chr1 147967738 147968113 -49227319 + RLTR23 LTR ERV1 8 373 -57 6 1713 2986 21 0 0 chr1 147968113 147968450 -49226982 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1713 53455 19 17 1 chr1 147968450 147974823 -49220609 + IAPEz-int LTR ERVK 8 6481 0 6 1713 2883 18 0 48 chr1 147974823 147975177 -49220255 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1713 251 242 16 0 chr1 147975182 147975244 -49220188 + RLTR23 LTR ERV1 368 430 0 6 1713 30 0 0 0 chr1 147975613 147975643 -49219789 + AT_rich Low_complexity Low_complexity 1 30 0 6 1713 266 302 94 6 chr1 147975650 147975820 -49219612 - L1MA4 LINE L1 -366 5934 5750 6 1713 1134 63 0 14 chr1 147976037 147976182 -49219250 + B1_Mm SINE Alu 5 147 0 6 1713 217 317 35 35 chr1 147976263 147976348 -49219084 + PB1D10 SINE Alu 10 94 -23 6 1713 1989 160 22 3 chr1 147976349 147976719 -49218713 + L1_Mur1 LINE L1 5240 5616 -270 6 1713 4456 179 33 5 chr1 147976720 147977568 -49217864 + Lx3B LINE L1 6097 6968 -5 6 1713 26 30 0 0 chr1 147977578 147977611 -49217821 + AT_rich Low_complexity Low_complexity 1 33 0 6 1713 180 185 0 0 chr1 147978608 147978662 -49216770 + (TATAA)n Simple_repeat Simple_repeat 1 54 0 6 214 21143 160 23 12 chr1 147978827 147985023 -49210409 + L1_Mus3 LINE L1 376 6632 -6 6 1714 566 39 0 13 chr1 147985027 147985080 -49210352 + (GAA)n Simple_repeat Simple_repeat 3 55 0 6 1714 1043 132 6 0 chr1 147985080 147985254 -49210178 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 6 1714 566 39 0 13 chr1 147985254 147985278 -49210154 + (GAA)n Simple_repeat Simple_repeat 2 25 0 6 1714 4150 122 11 2 chr1 147985280 147985911 -49209521 + L1_Mus4 LINE L1 5998 6634 -2 6 1714 24 32 0 0 chr1 147986410 147986441 -49208991 + AT_rich Low_complexity Low_complexity 1 31 0 6 1714 8520 116 31 6 chr1 147987698 147989292 -49206140 - L1_Mus3 LINE L1 0 6638 5007 6 1714 3263 51 2 0 chr1 147989292 147989687 -49205745 + MTA_Mm LTR MaLR 1 396 0 6 1714 8520 142 10 16 chr1 147989687 147990332 -49205100 - L1_Mus3 LINE L1 -877 5006 4366 6 1714 990 128 0 7 chr1 147990955 147991104 -49204328 + B1_Mus1 SINE Alu 1 148 0 6 1714 2091 229 16 0 chr1 147991147 147991596 -49203836 - Lx2 LINE L1 -68 6929 6474 7 1714 1371 186 0 14 chr1 147991602 147991880 -49203552 + Lx2B LINE L1 6210 6483 -517 7 1714 22 0 0 0 chr1 147992256 147992278 -49203154 + AT_rich Low_complexity Low_complexity 1 22 0 7 1714 1775 213 90 92 chr1 147993665 147994233 -49201199 - RMER2 LTR ERV1 0 567 1 7 1714 488 129 0 0 chr1 147995311 147995404 -49200028 + L1_Mus3 LINE L1 6546 6638 0 7 1714 30715 28 0 0 chr1 147995515 148000000 -49195432 - L1Md_A LINE L1 -2 6580 2096 7 1714 6855 43 3 23 chr1 148000000 148001687 -49193745 - L1Md_A LINE L1 -3788 2095 449 1 1714 426 65 0 0 chr1 148001931 148001993 -49193439 + (TCTCTG)n Simple_repeat Simple_repeat 3 64 0 2 1714 408 264 174 0 chr1 148002527 148002648 -49192784 - B1_Mur1 SINE Alu -1 148 7 3 1714 603 290 73 40 chr1 148002648 148003018 -49192414 + L1MA4 LINE L1 5484 5865 -435 4 1714 249 253 78 26 chr1 148003247 148003324 -49192108 - L2 LINE L2 -830 2589 2509 5 1714 188 323 112 20 chr1 148003458 148003556 -49191876 - L2 LINE L2 -1876 1543 1437 5 1714 32 26 0 0 chr1 148003610 148003649 -49191783 + AT_rich Low_complexity Low_complexity 1 39 0 6 1714 363 44 0 0 chr1 148003758 148003803 -49191629 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1714 310 355 26 26 chr1 148003803 148003949 -49191483 - RSINE1 SINE B4 -16 149 3 8 1714 239 222 17 69 chr1 148004362 148004478 -49190954 - Lx9 LINE L1 -9 7635 7526 9 1714 272 284 15 0 chr1 148006964 148007031 -49188401 - MLT1E1A LTR MaLR -547 133 66 1 1714 420 20 0 0 chr1 148008229 148008278 -49187154 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1714 717 257 135 93 chr1 148008942 148009350 -49186082 - RMER13B LTR ERVK -9 899 475 1 1714 380 217 276 9 chr1 148009390 148009506 -49185926 - RLTR26 LTR ERVK -759 147 1 1 1714 36 17 0 48 chr1 148009528 148009590 -49185842 + AT_rich Low_complexity Low_complexity 1 59 0 1 1714 403 265 77 42 chr1 148009614 148009870 -49185562 - L1_Mur3 LINE L1 -507 5649 5352 1 1714 3788 211 78 0 chr1 148009870 148010694 -49184738 + Lx5 LINE L1 6160 7047 -3 1 1714 21 0 0 0 chr1 148011686 148011707 -49183725 + AT_rich Low_complexity Low_complexity 1 21 0 1 1714 1590 303 36 3 chr1 148012379 148013070 -49182362 + L1_Mur3 LINE L1 564 1277 -6435 1 1714 833 200 0 11 chr1 148013122 148013304 -49182128 - L1_Mur3 LINE L1 -1185 4692 4513 1 1714 1953 208 25 60 chr1 148013300 148013980 -49181452 - L1_Mur3 LINE L1 -2224 3656 3001 1 1714 2390 227 41 12 chr1 148013978 148014655 -49180777 + L1_Mur3 LINE L1 4795 5491 -389 1 1714 2592 235 70 6 chr1 148014655 148015326 -49180106 - RMER6D LTR ERVK -6 714 1 2 1714 1572 241 16 0 chr1 148015326 148015700 -49179732 + L1_Mur3 LINE L1 5486 5865 -15 1 1714 1132 326 32 33 chr1 148015713 148016282 -49179150 + Lx6 LINE L1 6487 7433 -27 2 1714 812 239 62 3 chr1 148016350 148016657 -49178775 + Lx7 LINE L1 1331 1655 -4225 2 1714 2025 188 25 53 chr1 148016673 148016780 -49178652 + Lx7 LINE L1 2717 2811 -3069 2 1714 2949 200 53 23 chr1 148016780 148017475 -49177957 + RMER6D LTR ERVK 1 716 -4 2 1714 2025 188 25 53 chr1 148017475 148017933 -49177499 + Lx7 LINE L1 2812 3266 -2614 2 1714 3574 56 4 12 chr1 148017908 148018397 -49177035 + L1Md_F2 LINE L1 5101 5585 -298 2 1714 7908 54 2 3 chr1 148018398 148019395 -49176037 + L1Md_F2 LINE L1 5587 6582 0 2 1714 1467 242 28 8 chr1 148019411 148019882 -49175550 + Lx7 LINE L1 4750 5229 -651 2 1714 1452 227 178 49 chr1 148019897 148020369 -49175063 + RMER20B LTR ERVK 21 553 -74 2 1714 272 362 32 11 chr1 148020380 148020475 -49174957 + RMER20B LTR ERVK 505 601 -26 2 1714 1182 254 16 5 chr1 148020517 148020897 -49174535 + Lx7 LINE L1 5222 5605 -275 2 1714 1362 183 33 0 chr1 148020898 148021139 -49174293 + MTC LTR MaLR 5 253 -168 2 1714 2869 29 151 22 chr1 148021140 148021554 -49173878 + IAPLTR2_Mm LTR ERVK 1 455 -20 2 1714 754 244 13 0 chr1 148021551 148021707 -49173725 + MTC LTR MaLR 264 421 0 2 1714 1001 248 86 3 chr1 148021708 148022012 -49173420 + Lx7 LINE L1 5602 5930 -1766 2 1714 2543 254 94 20 chr1 148022070 148023156 -49172276 + Lx7 LINE L1 6069 7254 -442 2 1714 9608 146 18 23 chr1 148023180 148025606 -49169826 - L1VL4 LINE L1 -997 2820 512 2 1714 348 118 0 0 chr1 148025711 148025779 -49169653 + (T)n Simple_repeat Simple_repeat 1 68 0 2 1714 4751 98 6 5 chr1 148025779 148026556 -49168876 - L1_Mur1 LINE L1 -1976 3910 3133 3 1714 8192 112 30 7 chr1 148026556 148027794 -49167638 + Lx3_Mus LINE L1 5744 7009 0 3 1714 376 271 10 10 chr1 148027839 148027936 -49167496 - MT2A LTR ERVL -432 101 5 3 1714 1861 212 52 2 chr1 148028147 148028554 -49166878 + Lx5 LINE L1 6202 6628 -422 3 1714 3742 246 48 10 chr1 148028553 148029241 -49166191 + Lx5 LINE L1 6016 6733 -317 3 1714 435 19 0 0 chr1 148029241 148029293 -49166139 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1714 3742 246 48 10 chr1 148029293 148029304 -49166128 + Lx5 LINE L1 6734 6746 -304 3 1714 216 0 0 0 chr1 148029304 148029328 -49166104 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1714 3742 246 48 10 chr1 148029328 148029621 -49165811 + Lx5 LINE L1 6747 7046 -4 3 1714 939 114 0 0 chr1 148029839 148029979 -49165453 + L1_Mus2 LINE L1 6427 6566 0 3 1714 245 367 108 18 chr1 148030508 148030730 -49164702 + L2 LINE L2 1854 2095 -1324 3 1714 26 50 0 0 chr1 148030956 148030996 -49164436 + AT_rich Low_complexity Low_complexity 1 40 0 3 1714 588 202 132 84 chr1 148031002 148031229 -49164203 - RMER1C Other Other -23 1319 1082 4 1714 619 182 28 28 chr1 148031362 148031503 -49163929 - RMER1C Other Other -4 1338 1198 4 1714 656 161 8 0 chr1 148031505 148031629 -49163803 + GA-rich Low_complexity Low_complexity 3 127 0 4 1714 414 0 0 0 chr1 148031629 148031675 -49163757 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 4 1714 1386 216 38 3 chr1 148031675 148031991 -49163441 - RMER1C Other Other -153 1189 863 4 1714 800 176 3 6 chr1 148032622 148032986 -49162446 + (TG)n Simple_repeat Simple_repeat 1 363 0 4 1714 234 292 0 0 chr1 148033008 148033080 -49162352 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1714 318 26 0 0 chr1 148033938 148033977 -49161455 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1714 1169 62 0 0 chr1 148033979 148034124 -49161308 - B1_Mus1 SINE Alu -3 145 1 4 1714 22 70 0 0 chr1 148035018 148035061 -49160371 + AT_rich Low_complexity Low_complexity 1 43 0 4 1714 381 378 7 0 chr1 148035137 148035288 -49160144 + ORR1D1 LTR MaLR 6 157 -217 4 1714 678 204 139 22 chr1 148035289 148035469 -49159963 - ORR1D1 LTR MaLR 0 374 174 4 1714 210 37 0 0 chr1 148035584 148035611 -49159821 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1714 550 299 46 6 chr1 148036002 148036177 -49159255 - B3A SINE B2 -16 182 1 5 1714 297 0 0 0 chr1 148037019 148037052 -49158380 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1714 252 197 0 62 chr1 148037067 148037090 -49158342 + polypurine Low_complexity Low_complexity 1 21 0 5 1714 845 54 0 0 chr1 148037090 148037242 -49158190 + L1_Mus1 LINE L1 6455 6567 0 5 1714 446 317 55 10 chr1 148038382 148038583 -49156849 + B3 SINE B2 1 210 -6 5 1714 322 381 30 10 chr1 148038788 148038987 -49156445 + MIRb SINE MIR 47 249 -19 5 1714 5991 8 0 0 chr1 148039132 148039794 -49155638 - L1Md_T LINE L1 0 6582 5921 5 1714 9196 22 0 0 chr1 148039794 148040921 -49154511 + L1_Mm LINE L1 3939 5065 -818 5 1714 241 348 25 59 chr1 148041098 148041217 -49154215 - MTEb LTR MaLR -202 177 63 5 1714 1666 241 77 60 chr1 148041209 148041713 -49153719 + RLTR20B3 LTR ERVK 21 533 -44 6 1714 245 286 57 0 chr1 148041750 148041820 -49153612 - MTEb LTR MaLR -304 75 2 5 1714 2328 88 258 27 chr1 148042882 148043327 -49152105 - RLTR6_Mm LTR ERV1 -70 584 37 6 1714 64214 15 12 1 chr1 148043436 148051128 -49144304 - RLTR6-int LTR ERV1 0 7778 1 6 1714 2421 90 246 30 chr1 148051128 148051596 -49143836 - RLTR6_Mm LTR ERV1 -49 605 37 6 1714 23 0 0 0 chr1 148051816 148051839 -49143593 + AT_rich Low_complexity Low_complexity 1 23 0 6 1714 4400 176 65 72 chr1 148053700 148053785 -49141647 + Lx3B LINE L1 4724 4813 -1073 6 1714 2744 94 42 2 chr1 148053785 148054188 -49141244 - BGLII LTR ERVK -2 419 1 6 1714 4400 177 64 71 chr1 148054188 148055327 -49140105 + Lx3B LINE L1 4814 5938 -1035 6 1714 3905 144 51 20 chr1 148055327 148056030 -49139402 + Lx3C LINE L1 6250 6974 -2 6 1714 2956 210 167 38 chr1 148056030 148056975 -49138457 + Lx3B LINE L1 5939 6971 -5 6 1714 25 31 0 0 chr1 148056977 148057009 -49138423 + AT_rich Low_complexity Low_complexity 1 32 0 6 1714 26 30 0 0 chr1 148057028 148057061 -49138371 + AT_rich Low_complexity Low_complexity 1 33 0 6 1714 613 343 146 17 chr1 148057070 148057426 -49138006 - MTC LTR MaLR -14 407 6 6 1714 1190 280 173 24 chr1 148057439 148058059 -49137373 - MTC-int LTR MaLR -690 1273 641 6 1714 450 366 16 61 chr1 148058124 148058371 -49137061 - MTC-int LTR MaLR -930 328 93 6 1714 21 45 0 22 chr1 148058375 148058393 -49137039 + AT_rich Low_complexity Low_complexity 1 18 0 7 1714 347 54 54 0 chr1 148058393 148058449 -49136983 + L1Md_A LINE L1 6511 6569 -13 7 1714 21 45 0 22 chr1 148058449 148058476 -49136956 + AT_rich Low_complexity Low_complexity 1 27 0 7 1714 22 56 0 0 chr1 148060465 148060501 -49134931 + AT_rich Low_complexity Low_complexity 1 36 0 7 1714 310 74 18 18 chr1 148060581 148060636 -49134796 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1714 253 281 0 0 chr1 148060637 148060694 -49134738 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1714 275 410 0 0 chr1 148062155 148062260 -49133172 - B4A SINE B4 0 292 188 7 1714 1278 253 30 5 chr1 148062369 148062738 -49132694 + ORR1C1 LTR MaLR 1 378 0 7 1714 1210 225 26 58 chr1 148062831 148063246 -49132186 - L1_Rod LINE L1 -156 5691 5290 7 1714 680 306 44 22 chr1 148063262 148063583 -49131849 + Lx9 LINE L1 6835 7162 -482 7 1714 2987 181 21 10 chr1 148063567 148064171 -49131261 - L1_Mur2 LINE L1 -672 5205 4595 8 1714 229 402 71 27 chr1 148064356 148064395 -49131037 - B3 SINE B2 -7 209 172 8 1714 285 98 0 0 chr1 148064395 148064436 -49130996 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 8 1714 229 402 71 27 chr1 148064436 148064580 -49130852 - B3 SINE B2 -45 171 18 8 1714 31669 84 3 3 chr1 148064595 148069678 -49125754 + L1Md_F2 LINE L1 503 5586 -297 8 1714 7848 43 18 9 chr1 148069678 148070658 -49124774 + L1Md_F2 LINE L1 5587 6575 -7 8 1714 5891 165 17 4 chr1 148071475 148073097 -49122335 - Lx2 LINE L1 -606 6391 4748 8 1714 1795 171 68 5 chr1 148073081 148073464 -49121968 + Lx2 LINE L1 4298 4704 -1179 8 1714 765 301 89 29 chr1 148073822 148074348 -49121084 + L1_Mur3 LINE L1 4878 5435 -445 8 1714 560 143 703 0 chr1 148074371 148074544 -49120888 - Lx2B LINE L1 -353 6647 6353 8 1714 340 186 0 0 chr1 148074546 148074605 -49120827 + B2_Mm2 SINE B2 1 59 -136 8 1714 7106 89 7 1 chr1 148074624 148075938 -49119494 - L1_Mus1 LINE L1 -3 6564 5239 8 1714 1695 126 11 4 chr1 148075937 148076215 -49119217 + L1_Mus1 LINE L1 4967 5246 -637 8 1714 711 108 0 0 chr1 148076217 148076319 -49119113 + B2_Mm2 SINE B2 52 153 -42 8 1714 497 45 0 15 chr1 148076322 148076390 -49119042 + Lx2B LINE L1 6330 6396 -604 8 1714 2349 174 127 2 chr1 148076389 148076838 -49118594 + Lx2 LINE L1 6480 6984 -13 9 1714 1152 305 160 83 chr1 148076886 148077911 -49117521 + Lx6 LINE L1 6351 7454 -6 9 1714 353 331 27 7 chr1 148077919 148078065 -49117367 + Lx8 LINE L1 6878 7026 -447 9 1714 243 308 106 31 chr1 148078047 148078208 -49117224 + Lx8 LINE L1 7264 7436 -37 9 1714 260 288 14 14 chr1 148078449 148078523 -49116909 + Lx8 LINE L1 7261 7334 -139 9 1714 1393 279 136 42 chr1 148080411 148080519 -49114913 - Lx9 LINE L1 -9 7635 7487 9 1714 390 21 0 0 chr1 148080519 148080566 -49114866 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1714 1393 279 136 42 chr1 148080566 148081191 -49114241 - Lx9 LINE L1 -158 7486 6834 9 1714 1292 274 71 15 chr1 148081208 148081615 -49113817 - Lx6 LINE L1 -931 6529 6100 9 1714 2507 266 62 6 chr1 148081626 148082313 -49113119 + Lx6 LINE L1 6573 7278 -182 9 1714 7266 168 56 21 chr1 148082326 148083752 -49111680 - Lx2B LINE L1 -6 6994 5529 9 1714 1620 176 127 0 chr1 148083748 148084111 -49111321 + L1_Mur2 LINE L1 3931 4339 -1538 9 1714 3959 178 18 8 chr1 148084105 148084876 -49110556 + L1_Mur2 LINE L1 4730 5508 -369 9 1714 210 71 0 0 chr1 148085542 148085570 -49109862 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1714 27432 94 3 18 chr1 148086547 148090696 -49104736 + L1Md_A LINE L1 629 4732 -1151 1 1714 363 23 0 0 chr1 148090696 148090740 -49104692 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1714 27432 81 3 11 chr1 148090740 148091137 -49104295 + L1Md_A LINE L1 4733 5100 -783 1 1714 3805 75 2 4 chr1 148091128 148091633 -49103799 + L1Md_F2 LINE L1 5967 6470 -112 1 1714 916 74 0 0 chr1 148091625 148091747 -49103685 - L1Md_F2 LINE L1 -372 6210 6089 1 1714 2134 80 0 10 chr1 148091748 148092050 -49103382 + L1Md_F2 LINE L1 6283 6581 -1 1 1714 461 307 91 16 chr1 148092649 148092891 -49102541 - Tigger7 DNA MER2_type -1950 541 282 1 1714 23 54 0 0 chr1 148092961 148092998 -49102434 + AT_rich Low_complexity Low_complexity 1 37 0 1 1714 201 277 0 44 chr1 148093569 148093637 -49101795 + GA-rich Low_complexity Low_complexity 3 67 0 1 1714 968 79 7 0 chr1 148093735 148093874 -49101558 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 1 1714 22 0 0 0 chr1 148093895 148093917 -49101515 + AT_rich Low_complexity Low_complexity 1 22 0 1 1714 762 253 66 10 chr1 148094181 148094377 -49101055 - MTD LTR MaLR -5 414 208 1 1714 544 197 103 32 chr1 148094581 148094707 -49100725 + RMER6C LTR ERVK 1 135 -555 1 1714 247 316 84 100 chr1 148094713 148094903 -49100529 - RMER20B LTR ERVK 0 516 330 1 1714 424 271 28 0 chr1 148095063 148095170 -49100262 - RMER20B LTR ERVK -517 110 1 1 1714 1432 232 57 57 chr1 148095178 148095857 -49099575 + RMER6C LTR ERVK 190 717 -3 1 1714 22 99 0 0 chr1 148096102 148096173 -49099259 + AT_rich Low_complexity Low_complexity 1 71 0 1 1714 21 82 0 0 chr1 148096912 148096961 -49098471 + AT_rich Low_complexity Low_complexity 1 49 0 1 1714 186 275 33 121 chr1 148097513 148097604 -49097828 - MIR SINE MIR -61 201 119 1 1714 699 236 6 19 chr1 148098311 148098471 -49096961 - RLTR15 LTR ERVK -201 158 1 1 1714 396 0 0 0 chr1 148099051 148099095 -49096337 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1714 301 344 43 43 chr1 148099175 148099336 -49096096 - Lx8 LINE L1 -1052 6421 6261 1 1714 216 390 0 0 chr1 148099508 148099590 -49095842 - B4A SINE B4 -198 94 13 1 1714 796 130 76 8 chr1 148099717 148099849 -49095583 + B1_Mm SINE Alu 2 142 -5 1 1714 7526 92 5 3 chr1 148100279 148101975 -49093457 + L1_Mus1 LINE L1 4867 6566 -1 1 1714 893 149 20 101 chr1 148102081 148102294 -49093138 + LTRIS2 LTR ERV1 391 587 0 1 1714 384 22 0 0 chr1 148102319 148102364 -49093068 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1714 295 352 96 75 chr1 148102725 148103091 -49092341 + MLT1A0 LTR MaLR 6 369 -5 1 1714 1198 49 0 0 chr1 148105282 148105425 -49090007 + B1_Mus2 SINE Alu 1 143 -4 1 1714 749 261 201 19 chr1 148105614 148105927 -49089505 - ORR1D1 LTR MaLR 0 374 5 1 1714 1019 310 118 26 chr1 148105932 148106096 -49089336 + Lx9 LINE L1 6531 6695 -949 1 1714 279 54 0 0 chr1 148106096 148106133 -49089299 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1714 1019 310 118 26 chr1 148106133 148106538 -49088894 + Lx9 LINE L1 6696 7151 -493 1 1714 1977 85 30 7 chr1 148106968 148107265 -49088167 + L1_Mus3 LINE L1 6327 6630 -8 1 1714 1899 298 74 25 chr1 148107694 148108420 -49087012 + Lx8 LINE L1 6466 7227 -246 1 1714 24 32 0 0 chr1 148108572 148108603 -49086829 + AT_rich Low_complexity Low_complexity 1 31 0 1 1714 405 0 0 0 chr1 148108908 148108953 -49086479 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1714 207 0 0 0 chr1 148109178 148109201 -49086231 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1714 32 81 0 0 chr1 148109202 148109276 -49086156 + AT_rich Low_complexity Low_complexity 1 74 0 1 1714 4889 65 3 11 chr1 148109324 148109962 -49085470 + L1Md_T LINE L1 5950 6582 0 1 1714 29 0 0 0 chr1 148110133 148110162 -49085270 + AT_rich Low_complexity Low_complexity 1 29 0 1 1714 22 0 0 0 chr1 148110263 148110285 -49085147 + AT_rich Low_complexity Low_complexity 1 22 0 1 1714 318 300 11 11 chr1 148110308 148110399 -49085033 + Tigger15a DNA TcMar 390 480 -235 1 1714 284 394 17 19 chr1 148110494 148110725 -49084707 + MIR SINE MIR 7 242 -26 1 1714 432 0 0 0 chr1 148110932 148110980 -49084452 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1714 378 0 0 0 chr1 148110980 148111021 -49084411 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1714 219 182 39 0 chr1 148111256 148111333 -49084099 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 1 1715 260 358 26 41 chr1 148111631 148111826 -49083606 + B3A SINE B2 5 196 -2 1 1715 1807 244 116 103 chr1 148112021 148112165 -49083267 + RLTR25A LTR ERVK 161 283 -820 1 1715 1129 75 0 0 chr1 148112165 148112311 -49083121 + B1_Mm SINE Alu 2 147 0 1 1715 1807 244 116 103 chr1 148112311 148112688 -49082744 + RLTR25A LTR ERVK 284 690 -413 1 1715 243 0 0 0 chr1 148112688 148112715 -49082717 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1715 1807 260 220 60 chr1 148112715 148113004 -49082428 + RLTR25A LTR ERVK 691 1025 -3 1 1715 1284 68 0 0 chr1 148113069 148113276 -49082156 + (TG)n Simple_repeat Simple_repeat 1 207 0 1 1715 936 145 0 0 chr1 148113356 148113515 -49081917 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1 1715 341 277 158 34 chr1 148113647 148113939 -49081493 + L1ME2 LINE L1 5725 6052 -112 1 1715 338 228 167 20 chr1 148114214 148114366 -49081066 - B3 SINE B2 -4 191 26 1 1715 908 69 14 20 chr1 148114380 148114528 -49080904 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 1 1715 248 285 53 61 chr1 148114598 148114729 -49080703 - RSINE1 SINE B4 -33 132 3 1 1715 226 82 40 20 chr1 148115200 148115250 -49080182 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 1 1715 3323 65 4 18 chr1 148115499 148115953 -49079479 + L1_Mus1 LINE L1 6120 6567 0 1 1715 1814 14 9 0 chr1 148116474 148116687 -49078745 - L1Md_F2 LINE L1 -628 5954 5740 1 1715 568 48 12 0 chr1 148116687 148116771 -49078661 + L1Md_T LINE L1 6498 6582 0 1 1715 450 0 0 0 chr1 148116797 148116847 -49078585 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1715 603 0 0 0 chr1 148117291 148117358 -49078074 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1715 23 68 0 0 chr1 148119570 148119614 -49075818 + AT_rich Low_complexity Low_complexity 1 44 0 1 1715 333 0 0 0 chr1 148119744 148119781 -49075651 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1715 369 0 0 0 chr1 148119781 148119821 -49075611 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1715 24 0 0 0 chr1 148120186 148120210 -49075222 + AT_rich Low_complexity Low_complexity 1 24 0 1 1715 12993 57 1 4 chr1 148120358 148122743 -49072689 - L1Md_F2 LINE L1 -3 6579 4203 1 1715 2204 211 15 5 chr1 148122927 148123336 -49072096 + ETnERV2-int LTR ERVK 6646 7058 -348 1 1715 478 238 13 39 chr1 148123523 148123676 -49071756 + RLTR43A LTR ERVK 216 364 0 1 1715 1252 216 15 7 chr1 148123683 148123954 -49071478 + Lx5 LINE L1 6778 7050 0 1 1715 2295 212 5 67 chr1 148123972 148124537 -49070895 + RMER1B Other Other 410 1057 -9 1 1715 1128 128 0 0 chr1 148124539 148124718 -49070714 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 1 1715 504 0 0 0 chr1 148124720 148124776 -49070656 + (GAAAA)n Simple_repeat Simple_repeat 1 56 0 1 1715 1383 294 5 25 chr1 148124893 148125294 -49070138 - Lx6 LINE L1 -23 7437 7045 1 1715 3899 114 24 27 chr1 148125338 148125968 -49069464 - RLTR5_Mm LTR ERV1 0 628 1 1 1715 3521 205 20 133 chr1 148126000 148126964 -49068468 - RLTR25A LTR ERVK -248 855 1 1 1715 946 278 88 24 chr1 148126966 148127541 -49067891 - Lx6 LINE L1 -574 6886 6125 1 1715 3305 159 24 50 chr1 148127723 148129211 -49066221 + L1_Mus2 LINE L1 277 1732 -4151 1 1715 2430 123 44 46 chr1 148129211 148129687 -49065745 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1715 10841 30 7 0 chr1 148129687 148130945 -49064487 - IAPEz-int LTR ERVK 0 6481 5215 1 1715 44567 5 4 0 chr1 148130944 148135843 -49059589 - IAPEz-int LTR ERVK -1554 4927 8 1 1715 2454 116 53 51 chr1 148135843 148136317 -49059115 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1715 2634 127 5 2 chr1 148136317 148136750 -49058682 + L1_Mus2 LINE L1 1727 2160 -3723 1 1715 1089 86 0 0 chr1 148136750 148136889 -49058543 + B1_Mus1 SINE Alu 1 139 -9 1 1715 18366 114 10 10 chr1 148136919 148140539 -49054893 + L1_Mus2 LINE L1 2945 6566 0 1 1715 795 180 12 0 chr1 148141432 148141599 -49053833 - L1_Mur2 LINE L1 -2193 3684 3516 1 1715 2097 214 13 53 chr1 148141598 148141654 -49053778 + L1_Mur1 LINE L1 5216 5270 -616 1 1715 219 36 0 0 chr1 148141654 148141682 -49053750 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1715 2097 214 13 53 chr1 148141682 148142149 -49053283 + L1_Mur1 LINE L1 5271 5718 -168 1 1715 396 349 65 0 chr1 148144319 148144488 -49050944 - B3A SINE B2 -18 180 1 1 1715 854 271 93 12 chr1 148144586 148144930 -49050502 - ORR1D1 LTR MaLR -2 372 1 1 1715 423 0 0 0 chr1 148145002 148145049 -49050383 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1715 381 70 0 0 chr1 148145652 148145709 -49049723 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1715 225 0 0 0 chr1 148147239 148147264 -49048168 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1715 2078 175 15 74 chr1 148147295 148147752 -49047680 + RLTR23 LTR ERV1 1 430 0 1 1715 399 320 174 16 chr1 148148472 148148783 -49046649 - MLT1B LTR MaLR -28 362 3 1 1715 22 0 0 0 chr1 148149025 148149047 -49046385 + AT_rich Low_complexity Low_complexity 1 22 0 1 1715 27 0 0 0 chr1 148149104 148149131 -49046301 + AT_rich Low_complexity Low_complexity 1 27 0 1 1715 21 57 0 0 chr1 148149192 148149227 -49046205 + AT_rich Low_complexity Low_complexity 1 35 0 1 1715 369 366 0 54 chr1 148149357 148149487 -49045945 + MTEa LTR MaLR 15 137 -242 1 1715 203 301 0 21 chr1 148149594 148149689 -49045743 + GA-rich Low_complexity Low_complexity 2 94 0 1 1715 209 33 33 0 chr1 148150140 148150170 -49045262 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1715 8220 139 29 109 chr1 148150203 148151263 -49044169 + RLTR21 LTR ERVK 1 968 -604 1 1715 531 267 70 32 chr1 148151263 148151449 -49043983 + B3A SINE B2 1 193 -5 1 1715 306 0 0 0 chr1 148151454 148151488 -49043944 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1715 8220 139 29 109 chr1 148151488 148152100 -49043332 + RLTR21 LTR ERVK 969 1545 -27 1 1715 237 301 0 41 chr1 148152636 148152706 -49042726 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1715 261 0 0 0 chr1 148152706 148152735 -49042697 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 1 1715 237 301 0 41 chr1 148152735 148152761 -49042671 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1715 25 0 0 0 chr1 148153009 148153034 -49042398 + AT_rich Low_complexity Low_complexity 1 25 0 1 1715 24 0 0 0 chr1 148153706 148153730 -49041702 + AT_rich Low_complexity Low_complexity 1 24 0 1 1715 22 70 0 0 chr1 148153879 148153922 -49041510 + AT_rich Low_complexity Low_complexity 1 43 0 1 1715 270 306 27 82 chr1 148153949 148154035 -49041397 + MLT1A LTR MaLR 25 105 -269 2 1715 3722 59 55 6 chr1 148154035 148154530 -49040902 - MURVY-LTR LTR ERV1 0 519 1 2 1715 270 306 27 82 chr1 148154530 148154589 -49040843 + MLT1A LTR MaLR 106 162 -212 2 1715 3021 14 108 0 chr1 148155285 148155656 -49039776 - IAPLTR2a LTR ERVK 0 411 1 2 1715 238 154 86 103 chr1 148155937 148156053 -49039379 - L1Md_F2 LINE L1 -12 6570 6457 2 1715 277 253 61 31 chr1 148156100 148156198 -49039234 - RMER15 LTR ERVL -127 448 348 2 1715 26 30 0 0 chr1 148156342 148156375 -49039057 + AT_rich Low_complexity Low_complexity 1 33 0 2 1715 297 0 0 0 chr1 148158483 148158516 -49036916 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1715 600 300 115 47 chr1 148160357 148160948 -49034484 + L1MA6 LINE L1 5493 6123 -177 2 1715 613 284 0 0 chr1 148160973 148161114 -49034318 - B1_Mur2 SINE Alu -8 141 1 2 1715 27 29 0 0 chr1 148161253 148161287 -49034145 + AT_rich Low_complexity Low_complexity 1 34 0 2 1715 6733 145 40 14 chr1 148161720 148162881 -49032551 - Lx2 LINE L1 -11 6986 5796 2 1715 440 128 13 0 chr1 148162966 148163044 -49032388 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2 1715 1123 101 0 0 chr1 148163044 148163192 -49032240 - B1_Mus1 SINE Alu 0 148 1 2 1715 213 135 0 26 chr1 148163332 148163350 -49032082 + (CA)n Simple_repeat Simple_repeat 2 19 0 2 1715 4712 182 35 38 chr1 148163350 148164336 -49031096 - RLTR13C1 LTR ERVK 0 983 1 2 1715 213 135 0 26 chr1 148164336 148164355 -49031077 + (CA)n Simple_repeat Simple_repeat 2 20 0 2 1715 382 304 26 65 chr1 148164484 148164639 -49030793 + RMER15 LTR ERVL 22 170 -405 2 1715 508 172 0 24 chr1 148164678 148164755 -49030677 + polypurine Low_complexity Low_complexity 1 74 0 2 1715 1082 125 6 0 chr1 148164755 148164931 -49030501 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1715 508 172 0 24 chr1 148164931 148164978 -49030454 + polypurine Low_complexity Low_complexity 75 121 0 2 1715 328 364 50 34 chr1 148164978 148165157 -49030275 + RMER15 LTR ERVL 217 398 -177 2 1715 531 347 56 19 chr1 148166069 148166339 -49029093 - LTR86A2 LTR ERVL -223 285 6 2 1715 29 0 0 0 chr1 148166897 148166926 -49028506 + AT_rich Low_complexity Low_complexity 1 29 0 2 1715 271 256 10 113 chr1 148167010 148167107 -49028325 + B3A SINE B2 3 89 -109 2 1715 567 331 68 38 chr1 148167262 148167632 -49027800 + Lx6 LINE L1 59 439 -7289 2 1715 471 18 0 0 chr1 148167688 148167744 -49027688 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1715 653 267 67 0 chr1 148167768 148167933 -49027499 + Lx6 LINE L1 6323 6498 -962 2 1715 1192 144 181 102 chr1 148167933 148168265 -49027167 + RMER6D LTR ERVK 1 358 -332 2 1715 648 99 0 0 chr1 148168301 148168412 -49027020 + (T)n Simple_repeat Simple_repeat 1 111 0 2 1715 939 80 0 8 chr1 148168425 148168551 -49026881 - L1_Mus2 LINE L1 -383 6183 6059 2 1715 2942 64 0 0 chr1 148168552 148168928 -49026504 + L1_Mus2 LINE L1 6191 6566 0 2 1715 1435 239 60 0 chr1 148168928 148169242 -49026190 + RMER6D LTR ERVK 387 719 -1 2 1715 2412 293 68 15 chr1 148169242 148169994 -49025438 + Lx6 LINE L1 6492 7283 -177 2 1715 21 57 0 0 chr1 148169994 148170029 -49025403 + AT_rich Low_complexity Low_complexity 1 35 0 2 1715 2603 100 30 10 chr1 148170052 148170447 -49024985 + RLTR9D LTR ERVK 1 403 0 2 1715 367 300 117 93 chr1 148171110 148171444 -49023988 + LTR33B LTR ERVL 130 471 -32 2 1715 1977 238 22 0 chr1 148171947 148172483 -49022949 + Lx3C LINE L1 6421 6995 -5 2 1715 447 19 0 0 chr1 148172534 148172586 -49022846 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1715 429 122 0 0 chr1 148172608 148172682 -49022750 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 1715 481 291 14 23 chr1 148172768 148172986 -49022446 + L1MA4A LINE L1 5717 5932 -371 2 1715 405 286 64 82 chr1 148173159 148173426 -49022006 - Lx8 LINE L1 -7 7466 7205 2 1715 844 277 75 42 chr1 148173423 148173780 -49021652 + Lx8 LINE L1 6825 7155 -489 2 1715 1208 255 46 0 chr1 148173765 148174067 -49021365 + Lx6 LINE L1 6404 6719 -741 2 1715 1348 304 61 38 chr1 148174072 148174596 -49020836 + Lx6 LINE L1 6923 7458 -2 2 1715 557 92 27 9 chr1 148174669 148174779 -49020653 - L1_Mus4 LINE L1 -7 6629 6518 2 1715 21 82 0 0 chr1 148174843 148174892 -49020540 + AT_rich Low_complexity Low_complexity 1 49 0 2 1715 26 0 0 0 chr1 148174899 148174925 -49020507 + AT_rich Low_complexity Low_complexity 1 26 0 2 1715 378 0 0 0 chr1 148175074 148175116 -49020316 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 2 1715 189 74 0 0 chr1 148175222 148175249 -49020183 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1715 248 347 57 8 chr1 148175267 148175389 -49020043 - B3A SINE B2 -65 133 6 2 1715 225 308 136 37 chr1 148175724 148175886 -49019546 + RMER20A LTR ERVK 133 310 -206 2 1715 810 271 59 0 chr1 148176347 148176583 -49018849 - Lx7 LINE L1 -329 7367 7118 2 1715 6870 59 26 7 chr1 148177647 148178523 -49016909 - RLTR13B1 LTR ERVK 0 893 1 2 1715 350 180 10 0 chr1 148179232 148179332 -49016100 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 2 1715 386 300 41 86 chr1 148179332 148179529 -49015903 - B3 SINE B2 -24 192 5 2 1715 24 0 0 0 chr1 148180378 148180402 -49015030 + AT_rich Low_complexity Low_complexity 1 24 0 2 1715 4343 185 20 9 chr1 148180425 148181238 -49014194 - Lx4B LINE L1 -7 7051 6230 2 1715 794 160 0 27 chr1 148181238 148181386 -49014046 + Lx4B LINE L1 6083 6226 -832 2 1715 23 54 0 0 chr1 148183017 148183054 -49012378 + AT_rich Low_complexity Low_complexity 1 37 0 2 1715 252 185 0 0 chr1 148183057 148183111 -49012321 + T-rich Low_complexity Low_complexity 1 54 0 2 1715 244 250 0 101 chr1 148183860 148183949 -49011483 + MLT1A0 LTR MaLR 286 365 0 2 1715 362 378 47 47 chr1 148184051 148184373 -49011059 + MLT2C1 LTR ERVL 3 324 -73 2 1715 209 170 0 41 chr1 148185206 148185255 -49010177 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 2 1715 218 32 0 31 chr1 148185852 148185884 -49009548 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 1715 3161 157 23 21 chr1 148185892 148185994 -49009438 - Lx3C LINE L1 -7 6969 6873 2 1715 249 17 85 17 chr1 148185994 148186053 -49009379 + (CCA)n Simple_repeat Simple_repeat 3 65 0 2 1715 3161 157 23 21 chr1 148186053 148186518 -49008914 - Lx3C LINE L1 -104 6872 6403 2 1715 410 36 18 0 chr1 148186762 148186818 -49008614 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1715 2153 141 37 13 chr1 148186832 148187206 -49008226 + Lx LINE L1 6272 6654 0 2 1715 360 0 0 0 chr1 148188714 148188754 -49006678 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1715 279 0 0 0 chr1 148188754 148188784 -49006648 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1715 324 38 0 0 chr1 148189364 148189417 -49006015 - Lx LINE L1 -2 6652 6600 2 1715 615 185 59 7 chr1 148189524 148189660 -49005772 - Lx LINE L1 -37 6617 6475 2 1715 2114 214 87 26 chr1 148189880 148190421 -49005011 + RMER15 LTR ERVL 1 574 -1 2 1715 525 271 141 21 chr1 148190773 148190965 -49004467 + B3 SINE B2 2 216 0 2 1715 1125 88 0 0 chr1 148191113 148191260 -49004172 + B1_Mus2 SINE Alu 1 147 0 2 1715 329 343 68 79 chr1 148191354 148191544 -49003888 - Arthur1 DNA Tip100 -3688 259 72 2 1715 3198 156 24 4 chr1 148191550 148192090 -49003342 - Lx2 LINE L1 0 6997 6447 2 1715 1077 336 117 20 chr1 148193315 148194058 -49001374 - Lx8 LINE L1 -435 7038 6224 2 1715 306 0 0 0 chr1 148194078 148194112 -49001320 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1715 241 369 62 62 chr1 148194112 148194291 -49001141 + B3 SINE B2 38 216 0 2 1715 189 0 0 0 chr1 148194456 148194477 -49000955 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1715 562 269 24 59 chr1 148194654 148194907 -49000525 - Lx7 LINE L1 -1861 5835 5592 2 1715 197 132 0 26 chr1 148194937 148194976 -49000456 + CT-rich Low_complexity Low_complexity 1 38 0 2 1715 225 0 0 0 chr1 148195741 148195766 -48999666 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 2 1715 435 188 0 0 chr1 148196415 148196532 -48998900 + CT-rich Low_complexity Low_complexity 2 118 0 2 1715 233 204 0 0 chr1 148196552 148196596 -48998836 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1715 1423 69 32 5 chr1 148196662 148196879 -48998553 + L1Md_F3 LINE L1 6362 6584 0 2 1715 923 164 0 5 chr1 148197249 148197463 -48997969 + GA-rich Low_complexity Low_complexity 1 213 0 2 1715 339 404 7 13 chr1 148197581 148197593 -48997839 - RSINE1 SINE B4 -8 157 146 2 1715 939 70 0 0 chr1 148197593 148197721 -48997711 + (TG)n Simple_repeat Simple_repeat 2 129 0 2 1715 339 404 7 13 chr1 148197721 148197861 -48997571 - RSINE1 SINE B4 -20 145 6 2 1715 702 187 7 0 chr1 148198071 148198210 -48997222 + URR1B DNA MER1_type 86 225 0 2 1715 26 0 0 0 chr1 148198220 148198246 -48997186 + AT_rich Low_complexity Low_complexity 1 26 0 2 1715 23 54 0 0 chr1 148198450 148198487 -48996945 + AT_rich Low_complexity Low_complexity 1 37 0 2 1715 1544 83 23 5 chr1 148199414 148199632 -48995800 + L1_Mus1 LINE L1 6344 6565 -2 2 1715 26 0 0 0 chr1 148199862 148199888 -48995544 + AT_rich Low_complexity Low_complexity 1 26 0 2 1715 21 82 0 0 chr1 148200583 148200632 -48994800 + AT_rich Low_complexity Low_complexity 1 49 0 2 1715 24 32 0 0 chr1 148200670 148200701 -48994731 + AT_rich Low_complexity Low_complexity 1 31 0 2 1715 1388 189 37 255 chr1 148200835 148201284 -48994148 - L1VL2 LINE L1 -5719 616 342 2 1715 6127 37 20 0 chr1 148201284 148202021 -48993411 - L1Md_F2 LINE L1 -9 6573 5822 2 1715 1388 189 37 255 chr1 148202021 148202276 -48993156 - L1VL2 LINE L1 -5994 341 67 2 1715 522 211 42 60 chr1 148202366 148202532 -48992900 + Lx6 LINE L1 7094 7256 -204 2 1715 2010 136 74 33 chr1 148202560 148202925 -48992507 - Lx2 LINE L1 -2 6995 6616 2 1715 3230 162 6 0 chr1 148202925 148203475 -48991957 + L1_Mm LINE L1 5130 5682 -201 2 1715 221 208 0 19 chr1 148203764 148203818 -48991614 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1715 618 340 66 68 chr1 148204045 148204455 -48990977 + MTE2a LTR MaLR 11 419 0 2 1715 316 350 12 52 chr1 148204456 148204628 -48990804 + MTE2a-int LTR MaLR 2 166 -1204 2 1715 1258 51 51 6 chr1 148204630 148204807 -48990625 - L1_Mus2 LINE L1 -498 6068 5884 2 1715 3275 108 6 42 chr1 148204807 148205308 -48990124 + L1_Mus2 LINE L1 6084 6566 0 2 1715 286 348 6 42 chr1 148205336 148205501 -48989931 + MTE2a-int LTR MaLR 149 307 -1063 2 1715 243 0 0 0 chr1 148207352 148207379 -48988053 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1715 208 0 62 0 chr1 148207891 148207923 -48987509 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 2 1715 8065 51 2 1 chr1 148208481 148209870 -48985562 - L1Md_F2 LINE L1 0 6582 5192 2 1715 346 354 16 16 chr1 148210066 148210195 -48985237 + ID_B1 SINE B4 94 222 -2 3 1715 564 42 0 0 chr1 148210954 148211025 -48984407 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1715 648 349 53 41 chr1 148212652 148213088 -48982344 + Lx9 LINE L1 6805 7245 -399 3 1715 1119 244 50 24 chr1 148213083 148213381 -48982051 + Lx6 LINE L1 7103 7408 -52 3 1715 21 0 0 0 chr1 148213398 148213419 -48982013 + AT_rich Low_complexity Low_complexity 1 21 0 3 1715 1145 62 14 0 chr1 148213443 148213588 -48981844 + B1_Mm SINE Alu 1 147 0 3 1715 287 61 0 39 chr1 148213590 148213641 -48981791 + (CAAAAA)n Simple_repeat Simple_repeat 4 52 0 3 1715 1975 201 44 3 chr1 148213993 148214383 -48981049 - MTD LTR MaLR 0 419 14 3 1715 223 170 0 0 chr1 148214384 148214431 -48981001 + A-rich Low_complexity Low_complexity 1 47 0 3 1715 754 299 46 0 chr1 148215830 148216027 -48979405 - B3 SINE B2 -5 211 6 3 1715 548 132 18 36 chr1 148216273 148216383 -48979049 + Lx5 LINE L1 5587 5694 -1356 3 1715 1894 201 26 3 chr1 148216383 148216763 -48978669 - ORR1B1 LTR MaLR 0 394 6 3 1715 1669 240 103 29 chr1 148216764 148217310 -48978122 + Lx6 LINE L1 5687 6272 -1188 3 1715 348 64 0 0 chr1 148217345 148217392 -48978040 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 3 1715 398 313 25 42 chr1 148217472 148217592 -48977840 + ORR1D2 LTR MaLR 24 141 -229 3 1715 200 59 29 0 chr1 148217621 148217655 -48977777 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1715 29 28 0 0 chr1 148218035 148218071 -48977361 + AT_rich Low_complexity Low_complexity 1 36 0 3 1715 1115 127 6 6 chr1 148218091 148218273 -48977159 - Lx LINE L1 -20 6634 6453 3 1715 1147 88 0 0 chr1 148218932 148219079 -48976353 - B1_Mus2 SINE Alu 0 147 1 3 1715 393 22 0 0 chr1 148219948 148219994 -48975438 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1715 421 288 58 179 chr1 148220730 148221060 -48974372 + MTE2b LTR MaLR 2 291 -88 3 1715 843 305 132 0 chr1 148221064 148221389 -48974043 - ORR1D2 LTR MaLR -2 368 1 3 1715 6105 163 50 9 chr1 148221532 148222760 -48972672 + L1_Mur2 LINE L1 3689 4967 -910 3 1715 3595 180 7 18 chr1 148224080 148224786 -48970646 + L1_Mur2 LINE L1 4963 5660 -217 3 1715 2373 177 5 0 chr1 148224906 148225472 -48969960 - L1VL4 LINE L1 -2236 1323 754 3 1715 2468 67 0 9 chr1 148225669 148226003 -48969429 + L1Md_F2 LINE L1 6252 6582 0 3 1715 25 0 0 0 chr1 148226713 148226738 -48968694 + AT_rich Low_complexity Low_complexity 1 25 0 3 1715 281 364 22 43 chr1 148227637 148227821 -48967611 - Tigger7 DNA MER2_type -5 2486 2307 3 1715 441 342 37 47 chr1 148227845 148228091 -48967341 - Tigger7 DNA MER2_type -2222 269 7 3 1715 8116 2 0 0 chr1 148228428 148229326 -48966106 + L1Md_A LINE L1 5685 6582 0 3 1715 248 322 91 53 chr1 148229372 148229559 -48965873 + L2 LINE L2 2770 2963 -456 3 1715 27 62 0 0 chr1 148229744 148229792 -48965640 + AT_rich Low_complexity Low_complexity 1 48 0 3 1715 251 244 33 22 chr1 148230126 148230218 -48965214 + CT-rich Low_complexity Low_complexity 4 96 0 3 1715 859 111 32 0 chr1 148230365 148230491 -48964941 + Lx2 LINE L1 5789 5918 -1079 3 1715 1561 161 75 8 chr1 148230645 148231080 -48964352 + RLTR11A LTR ERVK 1 501 -27 3 1715 728 308 34 3 chr1 148231322 148231648 -48963784 + L1MC4a LINE L1 7093 7428 -454 3 1715 868 203 85 19 chr1 148231962 148232173 -48963259 + URR1B DNA MER1_type 1 225 0 3 1715 714 208 57 47 chr1 148232218 148232410 -48963022 + Lx5 LINE L1 6857 7050 0 3 1715 1152 158 0 0 chr1 148233393 148233595 -48961837 - Lx LINE L1 0 6654 6453 3 1715 4769 40 0 0 chr1 148234542 148235114 -48960318 + L1Md_T LINE L1 6011 6582 0 3 1715 486 0 0 0 chr1 148236010 148236064 -48959368 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1715 200 175 16 0 chr1 148236073 148236136 -48959296 + (TCTG)n Simple_repeat Simple_repeat 2 65 0 3 1715 25 0 0 0 chr1 148236173 148236198 -48959234 + AT_rich Low_complexity Low_complexity 1 25 0 3 1715 561 179 0 159 chr1 148236213 148236339 -48959093 + B3 SINE B2 3 108 -108 3 1715 231 157 0 0 chr1 148236340 148236391 -48959041 + CT-rich Low_complexity Low_complexity 1 51 0 3 1715 270 81 0 0 chr1 148236391 148236428 -48959004 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1715 1607 115 19 15 chr1 148236644 148236908 -48958524 - Lx2 LINE L1 -950 6047 5783 3 1715 5577 144 10 13 chr1 148236908 148237849 -48957583 + Lx2 LINE L1 6055 6992 -5 3 1715 380 71 18 0 chr1 148237850 148237906 -48957526 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 214 33912 70 4 1 chr1 148238088 148243258 -48952174 + L1Md_F2 LINE L1 446 5586 -297 3 1716 7430 64 27 2 chr1 148243258 148244225 -48951207 + L1Md_F2 LINE L1 5587 6577 -5 3 1716 2846 18 0 48 chr1 148244335 148244689 -48950743 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1716 56023 18 17 1 chr1 148244689 148251064 -48944368 - IAPEz-int LTR ERVK 0 6481 8 3 1716 2846 18 0 48 chr1 148251064 148251418 -48944014 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1716 227 365 95 14 chr1 148251472 148251619 -48943813 - MLT2B3 LTR ERVL -395 159 1 3 1716 204 40 0 0 chr1 148252309 148252334 -48943098 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1716 1746 285 37 21 chr1 148252540 148253024 -48942408 - Lx6 LINE L1 -59 7401 6910 3 1716 1041 295 52 32 chr1 148253164 148253320 -48942112 - Lx6 LINE L1 -1224 6236 6076 3 1716 3101 48 16 0 chr1 148253320 148253699 -48941733 + IAPEY_LTR LTR ERVK 1 385 0 3 1716 1041 295 52 32 chr1 148253699 148253980 -48941452 - Lx6 LINE L1 -1385 6075 5790 3 1716 2751 110 25 64 chr1 148254172 148254659 -48940773 - L1_Mm LINE L1 -936 4947 4480 3 1716 3345 108 20 10 chr1 148254659 148255166 -48940266 + L1_Mus3 LINE L1 6119 6630 -8 3 1716 256 209 0 15 chr1 148255697 148255765 -48939667 - Lx6 LINE L1 -1 7459 7393 3 1716 299 252 2 0 chr1 148255758 148255844 -48939588 - Lx6 LINE L1 -30 7430 7357 3 1716 668 264 18 0 chr1 148255843 148256006 -48939426 - Lx6 LINE L1 -330 7130 6965 3 1716 269 311 0 0 chr1 148256747 148256808 -48938624 - RLTR40 LTR ERVK -15 802 742 3 1716 660 274 32 0 chr1 148256801 148256987 -48938445 - RLTR40 LTR ERVK -625 192 1 3 1716 35 0 0 0 chr1 148257018 148257053 -48938379 + AT_rich Low_complexity Low_complexity 1 35 0 3 1716 24 53 0 0 chr1 148257167 148257205 -48938227 + AT_rich Low_complexity Low_complexity 1 38 0 3 1716 23 0 0 0 chr1 148257696 148257719 -48937713 + AT_rich Low_complexity Low_complexity 1 23 0 3 1716 1942 146 37 19 chr1 148258570 148258756 -48936676 + ORR1A2 LTR MaLR 1 186 -141 3 1716 3303 50 0 0 chr1 148258756 148259152 -48936280 - MTA_Mm LTR MaLR 0 396 1 3 1716 1942 146 37 19 chr1 148259152 148259286 -48936146 + ORR1A2 LTR MaLR 187 327 0 3 1716 315 0 0 0 chr1 148259726 148259761 -48935671 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1716 352 224 42 33 chr1 148259761 148259881 -48935551 - Lx4A LINE L1 -19 7039 6919 3 1716 350 308 61 31 chr1 148260524 148260785 -48934647 + L1M2 LINE L1 5012 5280 -863 3 1716 347 291 0 0 chr1 148260796 148260875 -48934557 + ID SINE ID 3 81 -143 3 1716 23 54 0 0 chr1 148261495 148261532 -48933900 + AT_rich Low_complexity Low_complexity 1 37 0 3 1716 351 0 0 0 chr1 148261561 148261600 -48933832 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1716 1160 22 0 0 chr1 148261602 148261736 -48933696 - B1_Mus2 SINE Alu -13 134 1 3 1716 21 36 0 0 chr1 148261824 148261852 -48933580 + AT_rich Low_complexity Low_complexity 1 28 0 3 1716 1143 84 108 0 chr1 148261993 148262160 -48933272 - B2_Mm2 SINE B2 -9 186 2 3 1716 368 255 40 85 chr1 148262167 148262343 -48933089 + Lx9 LINE L1 6916 7083 -561 3 1716 525 218 86 7 chr1 148263440 148263653 -48931779 + Lx8 LINE L1 5678 5919 -1554 3 1716 387 335 69 0 chr1 148263957 148264145 -48931287 + L1_Mur3 LINE L1 387 587 -7125 3 1716 354 224 26 78 chr1 148264129 148264245 -48931187 + L1_Mur3 LINE L1 735 844 -6868 3 1716 680 248 40 58 chr1 148264245 148264468 -48930964 - RLTR16 LTR ERVK -10 495 277 3 1716 744 311 55 56 chr1 148265195 148265574 -48929858 + MTD LTR MaLR 15 408 -11 3 1716 3298 188 21 20 chr1 148265591 148266511 -48928921 - Lx2B LINE L1 -824 6176 5264 3 1716 1531 62 24 9 chr1 148266511 148266724 -48928708 - MTB LTR MaLR 0 400 185 3 1716 5197 69 18 10 chr1 148266702 148267423 -48928009 - MT-int LTR MaLR -371 727 1 3 1716 256 222 14 14 chr1 148268066 148268139 -48927293 + GA-rich Low_complexity Low_complexity 2 74 0 3 1716 1498 49 0 0 chr1 148268375 148268560 -48926872 + MT2C_Mm LTR ERVL 291 475 0 3 1716 384 218 0 0 chr1 148268568 148268655 -48926777 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1716 1927 230 62 55 chr1 148268699 148269279 -48926153 + Lx3C LINE L1 6391 6974 -2 3 1716 22 0 0 0 chr1 148269279 148269301 -48926131 + AT_rich Low_complexity Low_complexity 1 22 0 3 1716 1251 0 0 0 chr1 148269892 148270031 -48925401 + (GAGAA)n Simple_repeat Simple_repeat 3 141 0 3 1716 325 405 18 18 chr1 148270099 148270270 -48925162 + L1M5 LINE L1 5440 5610 -630 3 1716 7542 126 47 37 chr1 148270391 148271723 -48923709 - Lx2A1 LINE L1 0 7008 5664 3 1716 1126 68 0 0 chr1 148271830 148271977 -48923455 + B1_Mus2 SINE Alu 1 147 0 3 1716 313 117 33 0 chr1 148272231 148272291 -48923141 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1716 185 0 40 0 chr1 148272892 148272917 -48922515 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1716 236 197 45 0 chr1 148273409 148273475 -48921957 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1716 2353 132 21 48 chr1 148273917 148274337 -48921095 - RLTR9E LTR ERVK 0 409 1 3 1716 23 78 0 0 chr1 148276531 148276582 -48918850 + AT_rich Low_complexity Low_complexity 1 51 0 3 1716 405 0 0 0 chr1 148276803 148276848 -48918584 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1716 21 0 0 0 chr1 148278030 148278051 -48917381 + AT_rich Low_complexity Low_complexity 1 21 0 3 1716 23 0 0 0 chr1 148278133 148278156 -48917276 + AT_rich Low_complexity Low_complexity 1 23 0 3 1716 1787 233 104 48 chr1 148278378 148278965 -48916467 + Lx7 LINE L1 6790 7409 -287 3 1716 243 0 0 0 chr1 148279539 148279566 -48915866 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1716 261 0 0 0 chr1 148279566 148279594 -48915838 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1716 224 200 15 0 chr1 148279625 148279690 -48915742 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1716 466 392 46 53 chr1 148279714 148279997 -48915435 - B4A SINE B4 -10 282 2 4 1716 24 53 0 0 chr1 148280347 148280385 -48915047 + AT_rich Low_complexity Low_complexity 1 38 0 4 1716 21 71 0 0 chr1 148280488 148280530 -48914902 + AT_rich Low_complexity Low_complexity 1 42 0 4 1716 21 36 0 0 chr1 148280588 148280616 -48914816 + AT_rich Low_complexity Low_complexity 1 28 0 4 1716 3793 114 33 44 chr1 148280630 148281264 -48914168 + Lx3A LINE L1 6349 6975 -6 4 1716 25 31 0 0 chr1 148281276 148281308 -48914124 + AT_rich Low_complexity Low_complexity 1 32 0 4 1716 379 407 35 32 chr1 148281386 148281668 -48913764 - B4A SINE B4 -8 284 2 4 1716 681 13 0 0 chr1 148283633 148283711 -48911721 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1716 326 364 28 7 chr1 148284733 148284877 -48910555 + RSINE1 SINE B4 2 148 -17 4 1716 396 0 0 0 chr1 148284905 148284949 -48910483 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1716 476 294 142 11 chr1 148284950 148285225 -48910207 - L1_Rod LINE L1 -136 5711 5401 4 1716 9321 57 2 8 chr1 148285224 148286974 -48908458 - L1Md_F2 LINE L1 0 6582 4844 4 1716 3755 9 121 0 chr1 148286974 148287414 -48908018 + MT2_Mm LTR ERVL 1 493 0 4 1716 9321 73 4 6 chr1 148287414 148287622 -48907810 - L1Md_F2 LINE L1 -1040 4843 4636 4 1716 250 304 9 0 chr1 148287655 148287734 -48907698 + B1_Mus2 SINE Alu 10 91 -29 4 1716 207 0 0 0 chr1 148288049 148288072 -48907360 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1716 1003 132 0 0 chr1 148288079 148288223 -48907209 - B1_Mus2 SINE Alu -3 144 1 4 1716 492 18 0 0 chr1 148288751 148288808 -48906624 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1716 369 0 0 0 chr1 148288808 148288848 -48906584 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1716 238 353 135 0 chr1 148288861 148288994 -48906438 - RSINE1 SINE B4 -12 153 3 4 1716 4982 44 0 3 chr1 148290207 148290821 -48904611 - L1Md_F2 LINE L1 -1 6581 5970 4 1716 186 133 0 0 chr1 148290909 148290939 -48904493 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1716 240 272 61 66 chr1 148291377 148291511 -48903921 - Lx8 LINE L1 -9 7464 7329 4 1716 579 117 0 0 chr1 148291511 148291605 -48903827 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1716 240 272 61 66 chr1 148291605 148291651 -48903781 - Lx8 LINE L1 -145 7328 7285 4 1716 38414 7 1 0 chr1 148292404 148297982 -48897450 + L1Md_A LINE L1 7 5586 -297 4 1716 8895 6 1 0 chr1 148297982 148298977 -48896455 + L1Md_A LINE L1 5587 6582 0 4 1716 38414 6 0 0 chr1 148298977 148298993 -48896439 + L1Md_A LINE L1 5587 5602 -281 4 1716 1190 271 98 13 chr1 148299045 148299423 -48896009 - MTD LTR MaLR -5 414 5 4 1716 1452 36 5 0 chr1 148300054 148300278 -48895154 + (TCTA)n Simple_repeat Simple_repeat 1 225 0 4 1716 240 208 0 19 chr1 148300281 148300335 -48895097 + CT-rich Low_complexity Low_complexity 2 54 0 4 1716 24 67 0 0 chr1 148300911 148300956 -48894476 + AT_rich Low_complexity Low_complexity 1 45 0 4 1716 769 336 59 38 chr1 148302330 148302804 -48892628 - Lx9 LINE L1 -248 7396 6913 4 1716 776 195 14 28 chr1 148302806 148303002 -48892430 + B3 SINE B2 1 189 -4 4 1716 571 128 18 0 chr1 148303072 148303181 -48892251 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 4 1716 24 0 0 0 chr1 148304816 148304840 -48890592 + AT_rich Low_complexity Low_complexity 1 24 0 4 1716 213 333 129 36 chr1 148305217 148305357 -48890075 - L2 LINE L2 -1261 2158 2006 4 1716 481 118 0 0 chr1 148305583 148305651 -48889781 + L1Md_F LINE L1 290 357 -6162 4 1716 3001 56 8 12 chr1 148305651 148306050 -48889382 + L1Md_F2 LINE L1 6186 6582 0 4 1716 288 209 0 0 chr1 148306123 148306209 -48889223 + T-rich Low_complexity Low_complexity 1 86 0 4 1716 313 342 12 37 chr1 148306614 148306775 -48888657 + L1M5 LINE L1 3730 3886 -2260 4 1716 5740 137 11 12 chr1 148307062 148307910 -48887522 - MusHAL1 LINE L1 -519 2193 1348 4 1716 3449 44 0 25 chr1 148307910 148308351 -48887081 - L1Md_F2 LINE L1 -2 6580 6151 4 1716 5740 137 11 12 chr1 148308351 148308507 -48886925 - MusHAL1 LINE L1 -1365 1347 1190 4 1716 180 0 0 0 chr1 148308527 148308547 -48886885 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1716 3444 147 35 5 chr1 148308548 148309117 -48886315 + Lx2 LINE L1 6348 6933 -64 4 1716 1143 30 0 0 chr1 148309155 148309289 -48886143 - L1Md_F3 LINE L1 -146 6438 6305 4 1716 1018 63 0 0 chr1 148309289 148309431 -48886001 + L1Md_A LINE L1 6441 6582 0 4 1716 1392 339 79 76 chr1 148309435 148310571 -48884861 + Lx8 LINE L1 6196 7335 -138 4 1716 22 0 0 0 chr1 148310682 148310704 -48884728 + AT_rich Low_complexity Low_complexity 1 22 0 4 1716 269 308 220 22 chr1 148310774 148311138 -48884294 + L1MA5 LINE L1 5865 6300 0 4 1716 1126 75 0 0 chr1 148311260 148311406 -48884026 - B1_Mus2 SINE Alu 0 147 2 4 1716 447 35 0 0 chr1 148311704 148311761 -48883671 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1716 192 77 0 0 chr1 148312579 148312605 -48882827 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1716 32199 80 3 9 chr1 148312693 148317927 -48877505 + L1Md_F2 LINE L1 387 5586 -297 4 1716 8037 48 6 0 chr1 148317927 148318916 -48876516 + L1Md_F2 LINE L1 5587 6581 -1 4 1716 21 36 0 0 chr1 148319674 148319702 -48875730 + AT_rich Low_complexity Low_complexity 1 28 0 4 1716 483 369 55 28 chr1 148320195 148320485 -48874947 + RMER15 LTR ERVL 275 572 -3 4 1716 312 27 0 0 chr1 148321210 148321247 -48874185 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1716 243 0 0 0 chr1 148321335 148321362 -48874070 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1716 24 53 0 0 chr1 148321964 148322002 -48873430 + AT_rich Low_complexity Low_complexity 1 38 0 4 1716 630 0 0 0 chr1 148322407 148322477 -48872955 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 4 1716 727 69 0 19 chr1 148322581 148322678 -48872754 + B1_Mm SINE Alu 41 137 -10 4 1716 207 0 0 0 chr1 148322678 148322701 -48872731 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1716 27 49 0 0 chr1 148322850 148322891 -48872541 + AT_rich Low_complexity Low_complexity 1 41 0 4 1716 329 294 94 119 chr1 148323153 148323473 -48871959 + MLT1B LTR MaLR 79 390 0 4 1716 333 218 50 25 chr1 148323557 148323637 -48871795 - MTA_Mm LTR MaLR -278 118 37 4 1716 3577 123 24 2 chr1 148323853 148324400 -48871032 + Lx LINE L1 6088 6646 -8 4 1716 592 217 9 0 chr1 148324689 148324804 -48870628 + B3 SINE B2 1 116 -100 4 1716 27 0 0 0 chr1 148324851 148324878 -48870554 + AT_rich Low_complexity Low_complexity 1 27 0 4 1716 207 0 0 0 chr1 148325617 148325640 -48869792 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 4 1716 351 0 0 0 chr1 148325846 148325885 -48869547 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1716 675 272 9 58 chr1 148325951 148326177 -48869255 + B3 SINE B2 1 215 -1 4 1716 356 322 133 21 chr1 148326439 148326972 -48868460 - L1MC2 LINE L1 -367 5977 5385 4 1716 1375 327 46 30 chr1 148327224 148328254 -48867178 - Lx8 LINE L1 -934 6539 5459 4 1716 201 74 0 0 chr1 148328269 148328296 -48867136 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1716 536 294 27 32 chr1 148328363 148328584 -48866848 + Lx9 LINE L1 6847 7066 -578 4 1716 4529 175 12 12 chr1 148328707 148329157 -48866275 + L1_Mur1 LINE L1 2459 2903 -2983 4 1716 1460 110 373 60 chr1 148329157 148329524 -48865908 + RLTR45 LTR ERVK 1 482 0 4 1716 4529 175 12 12 chr1 148329524 148330008 -48865424 + L1_Mur1 LINE L1 2904 3392 -2494 4 1716 351 211 0 0 chr1 148330006 148330077 -48865355 + L1_Mur2 LINE L1 5557 5627 -250 4 1716 320 217 0 0 chr1 148330077 148330146 -48865286 + RLTR25A LTR ERVK 1 69 -1034 4 1716 228 200 0 0 chr1 148330154 148330209 -48865223 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1716 22 0 0 0 chr1 148330336 148330358 -48865074 + AT_rich Low_complexity Low_complexity 1 22 0 4 1716 207 176 0 73 chr1 148331070 148331125 -48864307 + (TTA)n Simple_repeat Simple_repeat 1 51 0 4 1716 564 56 0 0 chr1 148331586 148331658 -48863774 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1716 358 291 141 18 chr1 148331672 148332070 -48863362 - L1MC2 LINE L1 -779 5367 4921 4 1716 2561 202 19 94 chr1 148332433 148333111 -48862321 + RMER20B LTR ERVK 1 627 0 4 1716 234 0 0 0 chr1 148334413 148334439 -48860993 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 4 1716 1098 96 0 0 chr1 148334600 148334757 -48860675 + (TTTTC)n Simple_repeat Simple_repeat 4 160 0 4 1716 276 86 0 0 chr1 148334758 148334793 -48860639 - B2_Mm2 SINE B2 -134 61 27 4 1716 972 122 64 0 chr1 148334791 148334947 -48860485 - B2_Mm1t SINE B2 -27 166 1 4 1716 345 331 71 26 chr1 148335600 148335755 -48859677 + B3A SINE B2 3 164 -34 4 1716 462 88 0 0 chr1 148335763 148335831 -48859601 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1716 25 0 0 0 chr1 148335836 148335861 -48859571 + AT_rich Low_complexity Low_complexity 1 25 0 4 1716 299 164 157 43 chr1 148335889 148336004 -48859428 - Lx9 LINE L1 0 7644 7517 4 1716 2593 71 11 0 chr1 148336029 148336380 -48859052 - L1Md_F2 LINE L1 -8 6574 6220 4 1716 1982 46 0 0 chr1 148336380 148336621 -48858811 + L1Md_F2 LINE L1 5994 6234 -348 4 1716 738 224 79 9 chr1 148336622 148336838 -48858594 - Lx9 LINE L1 -160 7484 7254 4 1716 426 20 0 0 chr1 148336979 148337030 -48858402 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1716 342 341 57 40 chr1 148337051 148337228 -48858204 + MLT1A0 LTR MaLR 186 365 0 4 1716 24 67 0 0 chr1 148339064 148339109 -48856323 + AT_rich Low_complexity Low_complexity 1 45 0 4 1716 360 0 0 0 chr1 148339284 148339324 -48856108 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1716 32 0 0 0 chr1 148339765 148339797 -48855635 + AT_rich Low_complexity Low_complexity 1 32 0 4 1716 461 71 14 0 chr1 148339873 148339943 -48855489 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1716 186 133 0 0 chr1 148342974 148343004 -48852428 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 4 1716 203 175 0 24 chr1 148343279 148343320 -48852112 + CT-rich Low_complexity Low_complexity 2 41 0 4 1716 216 0 0 0 chr1 148345456 148345480 -48849952 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1716 305 355 47 31 chr1 148350543 148350671 -48844761 + B1F SINE Alu 20 149 0 4 1716 183 156 0 0 chr1 148351799 148351831 -48843601 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1716 21 36 0 0 chr1 148352707 148352735 -48842697 + AT_rich Low_complexity Low_complexity 1 28 0 5 1716 21 0 0 0 chr1 148353179 148353200 -48842232 + AT_rich Low_complexity Low_complexity 1 21 0 5 1716 22 35 0 0 chr1 148353219 148353248 -48842184 + AT_rich Low_complexity Low_complexity 1 29 0 5 1716 676 309 5 16 chr1 148354219 148354403 -48841029 - B3 SINE B2 -5 211 30 5 1716 22 0 0 0 chr1 148354540 148354562 -48840870 + AT_rich Low_complexity Low_complexity 1 22 0 5 1716 215 296 14 0 chr1 148356720 148356791 -48838641 + B3A SINE B2 3 74 -124 5 1716 30 89 0 24 chr1 148357071 148357197 -48838235 + AT_rich Low_complexity Low_complexity 1 123 0 5 1716 252 0 0 0 chr1 148357800 148357828 -48837604 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1716 1557 168 60 0 chr1 148357831 148358116 -48837316 - RMER1C Other Other -148 1194 893 5 1716 30 59 0 0 chr1 148358167 148358218 -48837214 + AT_rich Low_complexity Low_complexity 1 51 0 5 1716 198 0 0 0 chr1 148358327 148358349 -48837083 + (TTA)n Simple_repeat Simple_repeat 2 23 0 5 1716 315 0 0 0 chr1 148361274 148361309 -48834123 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1716 27 49 0 0 chr1 148361316 148361357 -48834075 + AT_rich Low_complexity Low_complexity 1 41 0 5 1716 36 23 0 0 chr1 148361397 148361440 -48833992 + AT_rich Low_complexity Low_complexity 1 43 0 5 1716 198 0 0 0 chr1 148363379 148363401 -48832031 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1716 547 204 73 29 chr1 148363789 148363925 -48831507 + B1_Mus1 SINE Alu 2 143 -5 5 1716 21 0 0 0 chr1 148363951 148363972 -48831460 + AT_rich Low_complexity Low_complexity 1 21 0 5 1716 221 116 47 0 chr1 148364377 148364420 -48831012 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 5 1716 558 245 0 241 chr1 148364995 148365194 -48830238 + B3 SINE B2 45 216 0 5 1716 614 95 11 0 chr1 148365963 148366058 -48829374 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1716 207 0 0 0 chr1 148367138 148367161 -48828271 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1716 468 0 0 0 chr1 148367182 148367234 -48828198 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1716 1158 183 62 0 chr1 148367372 148367613 -48827819 - Lx2A LINE L1 0 7008 6753 5 1716 265 333 0 0 chr1 148368339 148368420 -48827012 + B4A SINE B4 188 268 -24 5 1716 22 88 0 0 chr1 148369099 148369156 -48826276 + AT_rich Low_complexity Low_complexity 1 57 0 5 1716 214 178 0 43 chr1 148369489 148369536 -48825896 + T-rich Low_complexity Low_complexity 2 46 0 5 1716 22 56 0 0 chr1 148370450 148370486 -48824946 + AT_rich Low_complexity Low_complexity 1 36 0 5 1716 718 117 21 28 chr1 148370488 148370629 -48824803 - Lx2 LINE L1 -1 6996 6857 5 1716 21 71 0 0 chr1 148370638 148370680 -48824752 + AT_rich Low_complexity Low_complexity 1 42 0 5 1716 275 156 0 15 chr1 148370918 148370983 -48824449 - Lx LINE L1 -30 6967 6904 5 1716 1182 116 19 121 chr1 148370973 148371237 -48824195 - Lx LINE L1 -198 6456 6220 5 1716 291 26 0 0 chr1 148371236 148371274 -48824158 + Lx LINE L1 6040 6077 -577 5 1716 246 128 0 0 chr1 148371410 148371449 -48823983 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 214 373 330 65 48 chr1 148373351 148373641 -48821791 - L1ME1 LINE L1 -148 6031 5737 5 1717 195 42 0 0 chr1 148373743 148373767 -48821665 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1717 378 304 27 0 chr1 148374222 148374334 -48821098 - B3A SINE B2 -83 115 1 5 1717 23 33 0 0 chr1 148374947 148374977 -48820455 + AT_rich Low_complexity Low_complexity 1 30 0 5 1717 293 272 52 124 chr1 148377117 148377327 -48818105 + B3A SINE B2 2 196 -2 5 1717 22 0 0 0 chr1 148377393 148377415 -48818017 + AT_rich Low_complexity Low_complexity 1 22 0 5 1717 21 36 0 0 chr1 148377453 148377481 -48817951 + AT_rich Low_complexity Low_complexity 1 28 0 5 1717 26 0 0 0 chr1 148378332 148378358 -48817074 + AT_rich Low_complexity Low_complexity 1 26 0 5 1717 230 255 51 68 chr1 148378594 148378712 -48816720 + Charlie2b DNA MER1_type 1287 1402 -1380 5 1717 234 0 0 0 chr1 148379969 148379995 -48815437 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1717 1228 20 0 0 chr1 148380667 148380814 -48814618 - B1_Mm SINE Alu 0 147 1 5 1717 327 329 64 0 chr1 148380900 148381040 -48814392 + B1F SINE Alu 1 149 0 5 1717 1926 76 26 59 chr1 148385926 148386232 -48809200 - L1_Mus2 LINE L1 -2 6564 6269 5 1717 23 0 0 0 chr1 148386564 148386587 -48808845 + AT_rich Low_complexity Low_complexity 1 23 0 5 1717 1017 130 0 0 chr1 148386640 148386786 -48808646 - B1_Mus2 SINE Alu 0 147 2 5 1717 1109 88 0 0 chr1 148387070 148387217 -48808215 + B1_Mm SINE Alu 1 147 0 5 1717 3926 177 19 5 chr1 148388108 148388847 -48806585 - L1_Mur2 LINE L1 -340 5537 4789 5 1717 22 0 0 30 chr1 148389045 148389064 -48806368 + AT_rich Low_complexity Low_complexity 1 19 0 5 1717 1322 77 11 0 chr1 148389064 148389245 -48806187 + B2_Mm1t SINE B2 2 184 -9 5 1717 22 0 0 30 chr1 148389245 148389258 -48806174 + AT_rich Low_complexity Low_complexity 1 13 0 5 1717 183 129 0 0 chr1 148391088 148391119 -48804313 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1717 194 0 39 0 chr1 148392192 148392218 -48803214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1717 1921 66 0 0 chr1 148392282 148392524 -48802908 - L1Md_F2 LINE L1 -651 5931 5690 5 1717 5108 87 0 4 chr1 148392524 148393231 -48802201 + L1Md_F2 LINE L1 5878 6581 -1 5 1717 2634 96 0 0 chr1 148393235 148393601 -48801831 - L1_Mus3 LINE L1 -123 6515 6150 5 1717 489 140 89 10 chr1 148393597 148393698 -48801734 + L1_Mus2 LINE L1 6450 6558 -8 5 1717 1868 128 10 0 chr1 148394847 148395144 -48800288 - Lx2 LINE L1 -1 6996 6697 5 1717 242 329 0 0 chr1 148395267 148395352 -48800080 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 5 1717 5478 31 10 5 chr1 148395357 148396031 -48799401 + L1Md_F3 LINE L1 5889 6566 -18 5 1717 1138 134 14 31 chr1 148396191 148396414 -48799018 + L1_Mus3 LINE L1 6420 6638 0 5 1717 2850 192 83 21 chr1 148396852 148397502 -48797930 + RMER6C LTR ERVK 1 690 0 5 1717 233 341 23 31 chr1 148398686 148398816 -48796616 - B1F SINE Alu -17 132 4 5 1717 21 0 0 0 chr1 148398921 148398942 -48796490 + AT_rich Low_complexity Low_complexity 1 21 0 5 1717 240 35 0 0 chr1 148399720 148399749 -48795683 + (CACCAT)n Simple_repeat Simple_repeat 4 32 0 5 1717 21 0 0 0 chr1 148400586 148400607 -48794825 + AT_rich Low_complexity Low_complexity 1 21 0 5 1717 834 222 48 103 chr1 148400616 148400947 -48794485 - Lx7 LINE L1 -9 7687 7375 5 1717 21 36 0 0 chr1 148400970 148400998 -48794434 + AT_rich Low_complexity Low_complexity 1 28 0 5 1717 2633 235 95 60 chr1 148401135 148402516 -48792916 - Lx7 LINE L1 -1096 6600 5214 5 1717 620 77 11 0 chr1 148402516 148402607 -48792825 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 5 1717 2339 195 123 94 chr1 148402607 148402744 -48792688 - Lx7 LINE L1 -667 5213 5057 5 1717 22 0 0 0 chr1 148402749 148402771 -48792661 + AT_rich Low_complexity Low_complexity 1 22 0 5 1717 213 65 0 0 chr1 148402784 148402815 -48792617 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1717 351 260 0 76 chr1 148402836 148402915 -48792517 - B3 SINE B2 -131 85 13 5 1717 6077 194 71 14 chr1 148405050 148407332 -48788100 - Lx5 LINE L1 0 7050 4628 5 1717 225 75 37 19 chr1 148407427 148407481 -48787951 + (TAA)n Simple_repeat Simple_repeat 2 56 0 5 1717 398 298 125 63 chr1 148407637 148408052 -48787380 + Lx9 LINE L1 7176 7616 -28 5 1717 525 104 0 0 chr1 148408184 148408261 -48787171 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1717 7012 117 16 9 chr1 148408516 148409921 -48785511 + L1_Mus3 LINE L1 5216 6624 -14 5 1717 1361 145 30 13 chr1 148409917 148410154 -48785278 - L1_Mm LINE L1 -968 4915 4675 5 1717 2699 81 0 0 chr1 148410154 148410564 -48784868 + L1_Mus1 LINE L1 6210 6567 0 5 1717 307 41 41 0 chr1 148410773 148410822 -48784610 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 5 1717 4224 257 48 24 chr1 148411021 148412173 -48783259 - Lx6 LINE L1 0 7460 6282 5 1717 488 356 21 60 chr1 148412873 148413154 -48782278 - L4 LINE RTE -1297 732 463 5 1717 23 54 0 0 chr1 148413452 148413489 -48781943 + AT_rich Low_complexity Low_complexity 1 37 0 5 1717 273 380 11 21 chr1 148414348 148414536 -48780896 + MIRc SINE MIR 83 268 0 5 1717 21 0 0 0 chr1 148414603 148414624 -48780808 + AT_rich Low_complexity Low_complexity 1 21 0 5 1717 381 360 29 0 chr1 148414732 148414868 -48780564 - B3 SINE B2 -5 211 72 5 1717 343 298 64 0 chr1 148414877 148414971 -48780461 + ORR1D1 LTR MaLR 23 122 -252 5 1717 423 0 0 0 chr1 148414974 148415021 -48780411 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1717 279 0 0 0 chr1 148415021 148415051 -48780381 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1717 21 36 0 0 chr1 148415212 148415240 -48780192 + AT_rich Low_complexity Low_complexity 1 28 0 5 1717 25 0 0 0 chr1 148415258 148415283 -48780149 + AT_rich Low_complexity Low_complexity 1 25 0 5 1717 6633 112 39 12 chr1 148415983 148417111 -48778321 - L1_Mus4 LINE L1 -10 6626 5467 5 1717 979 37 30 0 chr1 148417259 148417393 -48778039 + (TCCC)n Simple_repeat Simple_repeat 3 140 0 5 1717 329 307 103 26 chr1 148417440 148417674 -48777758 + Lx8 LINE L1 7219 7470 -3 5 1717 38 22 0 0 chr1 148417674 148417719 -48777713 + AT_rich Low_complexity Low_complexity 1 45 0 5 1717 531 312 99 22 chr1 148418402 148418746 -48776686 + Lx8 LINE L1 6129 6646 -998 5 1717 231 204 0 0 chr1 148418796 148418850 -48776582 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1717 25 31 0 0 chr1 148420009 148420041 -48775391 + AT_rich Low_complexity Low_complexity 1 32 0 5 1717 203 169 16 33 chr1 148421068 148421129 -48774303 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 5 1717 351 0 0 0 chr1 148421524 148421563 -48773869 + (TTA)n Simple_repeat Simple_repeat 3 41 0 6 1717 219 318 44 66 chr1 148421827 148421918 -48773514 - FAM SINE Alu -66 245 157 6 1717 234 0 0 0 chr1 148422063 148422089 -48773343 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1717 1348 231 67 27 chr1 148422092 148422466 -48772966 - Lx9 LINE L1 -175 7469 7081 6 1717 21 36 0 0 chr1 148423437 148423465 -48771967 + AT_rich Low_complexity Low_complexity 1 28 0 6 1717 297 0 0 0 chr1 148424600 148424633 -48770799 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1717 21 36 0 0 chr1 148425190 148425218 -48770214 + AT_rich Low_complexity Low_complexity 1 28 0 6 1717 2237 223 36 8 chr1 148425233 148425734 -48769698 - Lx5 LINE L1 -391 6659 6145 6 1717 770 306 19 77 chr1 148425742 148426066 -48769366 + Lx5 LINE L1 6725 7056 -2 6 1717 780 122 26 20 chr1 148426127 148426278 -48769154 + L1_Mus3 LINE L1 6471 6622 -16 6 1717 21 36 0 0 chr1 148426281 148426309 -48769123 + AT_rich Low_complexity Low_complexity 1 28 0 6 1717 411 235 39 10 chr1 148427422 148427525 -48767907 + B1F SINE Alu 9 114 -35 6 1717 529 351 72 15 chr1 148428308 148428523 -48766909 - L2 LINE L2 -811 2608 2374 6 1717 258 32 0 0 chr1 148428523 148428554 -48766878 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1717 529 351 72 15 chr1 148428554 148428673 -48766759 - L2 LINE L2 -1046 2373 2255 6 1717 432 311 39 22 chr1 148428690 148428920 -48766512 + L1M3 LINE L1 3919 4152 -1988 6 1717 232 48 23 23 chr1 148429073 148429116 -48766316 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1717 299 222 60 52 chr1 148429118 148429237 -48766195 - B1_Mur4 SINE Alu 0 117 2 6 1717 338 22 43 0 chr1 148429706 148429752 -48765680 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1717 4405 121 5 40 chr1 148429761 148430542 -48764890 - L1_Mur2 LINE L1 -822 5055 4302 6 1717 2066 168 22 5 chr1 148430551 148430952 -48764480 - L1_Mur2 LINE L1 -4034 1843 1436 6 1717 26 30 0 0 chr1 148432060 148432093 -48763339 + AT_rich Low_complexity Low_complexity 1 33 0 6 1717 23 33 0 0 chr1 148432689 148432719 -48762713 + AT_rich Low_complexity Low_complexity 1 30 0 6 1717 15841 58 11 5 chr1 148433703 148436497 -48758935 - L1Md_F2 LINE L1 0 6582 3765 6 1717 399 297 151 15 chr1 148436522 148436854 -48758578 - L1M3 LINE L1 -1743 4397 4021 6 1717 451 276 70 6 chr1 148437079 148437250 -48758182 - MER3 DNA MER1_type -21 188 7 6 1717 23 54 0 0 chr1 148437343 148437380 -48758052 + AT_rich Low_complexity Low_complexity 1 37 0 6 1717 409 315 107 85 chr1 148437410 148437764 -48757668 + MTEb LTR MaLR 1 362 -17 6 1717 23 0 0 0 chr1 148438843 148438866 -48756566 + AT_rich Low_complexity Low_complexity 1 23 0 6 1717 258 32 0 0 chr1 148439037 148439068 -48756364 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1717 225 127 55 27 chr1 148439070 148439143 -48756289 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 6 1717 266 262 0 47 chr1 148439170 148439234 -48756198 + RMER6C LTR ERVK 2 62 -628 6 1717 477 199 21 33 chr1 148439178 148439291 -48756141 - RMER6C LTR ERVK -609 111 1 6 1717 502 102 0 43 chr1 148439619 148439711 -48755721 + Lx LINE L1 6563 6650 -4 6 1717 351 263 112 15 chr1 148440197 148440394 -48755038 + L1M2 LINE L1 4830 5045 -1098 6 1717 1095 171 0 0 chr1 148440398 148440591 -48754841 - L1_Mur2 LINE L1 -2355 3522 3330 6 1717 1582 244 127 2 chr1 148440611 148441067 -48754365 + Lx3C LINE L1 6180 6692 -284 6 1717 32 0 0 0 chr1 148441086 148441118 -48754314 + AT_rich Low_complexity Low_complexity 1 32 0 6 1717 302 223 42 21 chr1 148441129 148441225 -48754207 + L1M2 LINE L1 5035 5132 -1008 6 1717 2084 160 45 67 chr1 148441351 148441814 -48753618 + RLTR11B LTR ERVK 1 453 0 6 1717 562 256 102 12 chr1 148441849 148442094 -48753338 + L1M2 LINE L1 5262 5528 -772 6 1717 267 304 0 0 chr1 148444156 148444258 -48751174 + CT-rich Low_complexity Low_complexity 1 102 0 6 1717 5720 65 1 0 chr1 148445210 148445949 -48749483 + L1Md_F2 LINE L1 5841 6580 -2 6 1717 792 174 6 17 chr1 148447599 148447780 -48747652 + GA-rich Low_complexity Low_complexity 1 179 0 6 1717 213 39 0 0 chr1 148448461 148448487 -48746945 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1717 186 43 0 0 chr1 148448790 148448813 -48746619 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1717 21 0 0 0 chr1 148449547 148449568 -48745864 + AT_rich Low_complexity Low_complexity 1 21 0 6 1717 583 65 21 0 chr1 148450051 148450144 -48745288 + (TG)n Simple_repeat Simple_repeat 1 95 0 6 1717 299 328 23 15 chr1 148450545 148450675 -48744757 + MER94 DNA AcHobo 4 134 0 6 1717 201 121 0 0 chr1 148450855 148450888 -48744544 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6 1717 37706 30 0 0 chr1 148451204 148457467 -48737965 - L1Md_T LINE L1 0 6585 242 6 1717 504 168 0 0 chr1 148457859 148457960 -48737472 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1717 482 184 8 0 chr1 148457972 148458097 -48737335 + GA-rich Low_complexity Low_complexity 1 126 0 6 1717 21 57 0 0 chr1 148458227 148458262 -48737170 + AT_rich Low_complexity Low_complexity 1 35 0 6 1717 259 231 149 28 chr1 148458441 148458548 -48736884 - MER20 DNA MER1_type -4 215 96 6 1717 255 176 147 0 chr1 148458987 148459055 -48736377 - Lx9 LINE L1 -353 7291 7214 6 1717 315 0 0 0 chr1 148459101 148459136 -48736296 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1717 2386 71 0 0 chr1 148460247 148460557 -48734875 - L1Md_F2 LINE L1 -248 6334 6025 6 1717 967 80 40 0 chr1 148460557 148460707 -48734725 + L1Md_F2 LINE L1 6425 6580 -2 6 1717 362 205 189 0 chr1 148461128 148461255 -48734177 - Lx9 LINE L1 -7 7637 7487 6 1717 220 102 41 0 chr1 148461283 148461332 -48734100 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1717 3389 180 75 24 chr1 148461591 148462170 -48733262 - RLTR22_Mur LTR ERVK -860 988 377 6 1717 392 0 21 0 chr1 148462170 148462218 -48733214 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1717 3389 180 75 24 chr1 148462218 148462402 -48733030 - RLTR22_Mur LTR ERVK -1472 376 187 6 1717 354 23 0 0 chr1 148462402 148462445 -48732987 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1717 489 34 0 0 chr1 148462445 148462503 -48732929 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1717 294 290 35 70 chr1 148462503 148462618 -48732814 - RLTR22_Mur LTR ERVK -1714 134 24 6 1717 3124 250 32 25 chr1 148462626 148463511 -48731921 - Lx9 LINE L1 -215 7429 6539 6 1717 1323 236 50 23 chr1 148463899 148464351 -48731081 - Lx9 LINE L1 -1669 5975 5480 6 1717 246 95 0 0 chr1 148465120 148465162 -48730270 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1717 409 250 19 28 chr1 148465172 148465279 -48730153 + RLTR17 LTR ERVK 328 433 -259 6 1717 22086 157 34 51 chr1 148465279 148471444 -48723988 + L1_Mus3 LINE L1 582 6635 -3 6 1717 243 88 0 0 chr1 148471675 148471709 -48723723 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 6 1717 870 315 58 19 chr1 148471842 148472220 -48723212 - Lx6 LINE L1 -26 7434 7042 6 1717 373 321 6 0 chr1 148472218 148472372 -48723060 - Lx6 LINE L1 -576 6884 6780 6 1717 180 0 0 0 chr1 148472742 148472762 -48722670 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1717 964 304 109 22 chr1 148472764 148472858 -48722574 + MTD LTR MaLR 22 121 -298 6 1717 939 9 0 0 chr1 148472858 148472966 -48722466 + (TTC)n Simple_repeat Simple_repeat 1 108 0 6 1717 964 304 109 22 chr1 148472966 148473237 -48722195 + MTD LTR MaLR 122 419 0 6 1717 835 208 11 27 chr1 148473804 148473844 -48721588 - B2_Mm2 SINE B2 -8 187 152 6 1717 630 37 0 0 chr1 148473844 148473925 -48721507 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1717 835 208 11 27 chr1 148473925 148474072 -48721360 - B2_Mm2 SINE B2 -44 151 4 6 1717 264 30 0 0 chr1 148474105 148474138 -48721294 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 1717 215 60 59 20 chr1 148474632 148474683 -48720749 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1717 264 59 0 0 chr1 148474960 148474994 -48720438 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 6 1717 434 193 146 9 chr1 148474994 148475104 -48720328 - B1_Mur2 SINE Alu -11 138 14 6 1717 518 290 35 17 chr1 148475219 148475391 -48720041 - RMER15 LTR ERVL 0 575 401 6 1717 248 259 58 77 chr1 148475613 148475768 -48719664 - L1M2c LINE L1 -2396 4389 4238 6 1717 337 331 169 0 chr1 148475835 148476013 -48719419 - L1M2c LINE L1 -2552 4233 4026 6 1717 26 74 0 0 chr1 148476585 148476639 -48718793 + AT_rich Low_complexity Low_complexity 1 54 0 6 1717 362 321 88 13 chr1 148476665 148477063 -48718369 - L1M2c LINE L1 -2886 3899 3472 6 1717 23 33 0 0 chr1 148477288 148477318 -48718114 + AT_rich Low_complexity Low_complexity 1 30 0 6 1717 205 191 0 0 chr1 148477425 148477467 -48717965 + T-rich Low_complexity Low_complexity 1 42 0 6 1717 567 303 75 9 chr1 148477941 148478154 -48717278 + MTD LTR MaLR 193 419 0 6 1717 439 188 51 72 chr1 148478176 148478314 -48717118 - Lx9 LINE L1 -159 7485 7351 6 1717 269 288 23 96 chr1 148478311 148478530 -48716902 - L1M2c LINE L1 -4830 1959 1757 6 1717 212 43 87 0 chr1 148478630 148478676 -48716756 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 6 1717 21 0 0 0 chr1 148478796 148478817 -48716615 + AT_rich Low_complexity Low_complexity 1 21 0 6 1717 23 0 0 0 chr1 148481021 148481044 -48714388 + AT_rich Low_complexity Low_complexity 1 23 0 6 1717 180 0 0 0 chr1 148481304 148481324 -48714108 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1717 1030 332 72 32 chr1 148481714 148482390 -48713042 + Lx8 LINE L1 6447 7149 -324 6 1717 21 36 0 0 chr1 148482775 148482803 -48712629 + AT_rich Low_complexity Low_complexity 1 28 0 6 1717 1079 72 0 13 chr1 148482872 148483027 -48712405 + (TTTTC)n Simple_repeat Simple_repeat 2 154 0 6 1717 600 236 94 7 chr1 148484223 148484372 -48711060 + B3 SINE B2 1 162 -54 6 1717 333 0 0 0 chr1 148484686 148484723 -48710709 + (CAA)n Simple_repeat Simple_repeat 1 37 0 6 1717 22 35 0 0 chr1 148485042 148485071 -48710361 + AT_rich Low_complexity Low_complexity 1 29 0 6 1717 3127 55 0 12 chr1 148485450 148485857 -48709575 - L1Md_F2 LINE L1 -13 6569 6168 6 1717 262 27 0 0 chr1 148485857 148485894 -48709538 + MusHAL1 LINE L1 502 538 -2174 6 1717 240 59 0 0 chr1 148487703 148487737 -48707695 + (CAA)n Simple_repeat Simple_repeat 2 35 0 6 1717 21 0 0 0 chr1 148490042 148490063 -48705369 + AT_rich Low_complexity Low_complexity 1 21 0 6 1717 27 62 0 0 chr1 148491880 148491928 -48703504 + AT_rich Low_complexity Low_complexity 1 48 0 6 1717 699 69 0 0 chr1 148492077 148492179 -48703253 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1717 498 263 26 0 chr1 148492359 148492473 -48702959 - B3 SINE B2 -5 211 95 6 1717 257 169 17 0 chr1 148492831 148492890 -48702542 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1717 4350 68 43 2 chr1 148492999 148493576 -48701856 - L1_Mus2 LINE L1 0 6566 5966 6 1717 35 0 0 0 chr1 148493877 148493912 -48701520 + AT_rich Low_complexity Low_complexity 1 35 0 7 1717 279 380 75 18 chr1 148495357 148495636 -48699796 + L2c LINE L2 2926 3220 -167 7 1717 6254 125 24 9 chr1 148496182 148496962 -48698470 - Lx LINE L1 0 6654 5863 7 1717 435 19 0 0 chr1 148496962 148497014 -48698418 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1717 288 0 0 0 chr1 148497014 148497045 -48698387 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1717 6254 125 24 9 chr1 148497045 148497254 -48698178 - Lx LINE L1 -792 5862 5650 7 1717 246 218 56 16 chr1 148497319 148497445 -48697987 + (TTATA)n Simple_repeat Simple_repeat 4 134 0 7 1717 329 288 62 14 chr1 148497986 148498252 -48697180 - L1_Mm LINE L1 -701 5479 5168 7 1717 303 28 0 0 chr1 148498316 148498352 -48697080 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1717 275 286 32 32 chr1 148498519 148498642 -48696790 - L1_Rod LINE L1 -922 4925 4803 7 1717 357 286 131 20 chr1 148498675 148498989 -48696443 - L1_Mm LINE L1 -1130 4750 4437 7 1717 800 239 57 32 chr1 148499031 148499277 -48696155 + Lx9 LINE L1 6780 7031 -613 7 1717 370 295 0 0 chr1 148499305 148499400 -48696032 + Lx9 LINE L1 7105 7199 -445 7 1717 505 167 25 7 chr1 148499397 148499533 -48695899 + Lx LINE L1 6495 6602 -52 7 1717 1037 187 98 84 chr1 148499523 148499880 -48695552 + L1_Rod LINE L1 4490 4851 -996 7 1717 207 0 0 0 chr1 148499885 148499908 -48695524 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1717 345 368 80 32 chr1 148500030 148500144 -48695288 - L1M2 LINE L1 -1825 4318 4210 1 1717 2739 89 42 10 chr1 148500144 148500551 -48694881 - BGLII LTR ERVK -1 420 1 2 1717 345 368 80 32 chr1 148500551 148500686 -48694746 - L1M2 LINE L1 -1934 4209 4057 1 1717 722 304 10 5 chr1 148501791 148501993 -48693439 - B3 SINE B2 -12 204 2 3 1717 28 29 0 0 chr1 148502001 148502036 -48693396 + AT_rich Low_complexity Low_complexity 1 35 0 4 1717 294 308 0 0 chr1 148502118 148502277 -48693155 + CT-rich Low_complexity Low_complexity 4 162 0 5 1717 243 292 61 15 chr1 148502365 148502431 -48693001 + B1_Mur1 SINE Alu 53 121 -28 6 1717 339 25 0 0 chr1 148502469 148502509 -48692923 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1717 403 304 66 56 chr1 148502767 148502980 -48692452 - RMER15 LTR ERVL -87 488 274 8 1717 333 0 0 0 chr1 148503210 148503247 -48692185 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9 1717 23 0 0 0 chr1 148504099 148504122 -48691310 + AT_rich Low_complexity Low_complexity 1 23 0 1 1718 23 78 0 0 chr1 148505304 148505355 -48690077 + AT_rich Low_complexity Low_complexity 1 51 0 1 1718 632 100 110 0 chr1 148505593 148505693 -48689739 - L1_Mm LINE L1 -204 5679 5569 1 1718 1347 142 17 0 chr1 148505693 148505933 -48689499 + L1_Mus4 LINE L1 6386 6629 -7 1 1718 1188 199 38 8 chr1 148505934 148506197 -48689235 - Lx5 LINE L1 -1135 5915 5645 1 1718 11772 94 11 69 chr1 148506197 148508156 -48687276 + RLTR22_Mur LTR ERVK 1 1845 -3 1 1718 2386 219 18 102 chr1 148508159 148508225 -48687207 - Lx5 LINE L1 -264 5613 5551 1 1718 7053 63 5 0 chr1 148508225 148509114 -48686318 - RLTR13B1 LTR ERVK 0 893 1 1 1718 2386 219 18 102 chr1 148509114 148509469 -48685963 - Lx5 LINE L1 -327 5550 5254 1 1718 6873 104 9 11 chr1 148509469 148510551 -48684881 - Lx3A LINE L1 -7 6974 5895 1 1718 2386 219 18 102 chr1 148510551 148510834 -48684598 - Lx5 LINE L1 -624 5253 4967 1 1718 2546 228 40 30 chr1 148510834 148511519 -48683913 + Lx5 LINE L1 6272 7050 0 1 1718 1737 247 47 35 chr1 148511666 148512240 -48683192 + RMER1B Other Other 331 1066 0 1 1718 23 33 0 0 chr1 148512328 148512358 -48683074 + AT_rich Low_complexity Low_complexity 1 30 0 2 1718 30 0 0 0 chr1 148513179 148513209 -48682223 + AT_rich Low_complexity Low_complexity 1 30 0 2 1718 5860 142 21 26 chr1 148513630 148514658 -48680774 - RLTR13D5 LTR ERVK 0 1023 1 2 1718 2261 177 194 57 chr1 148515132 148515739 -48679693 - RMER6C LTR ERVK 0 690 1 2 1718 401 202 79 0 chr1 148515873 148515962 -48679470 - Lx3A LINE L1 -6 6975 6880 2 1718 21 36 0 0 chr1 148516243 148516271 -48679161 + AT_rich Low_complexity Low_complexity 1 28 0 2 1718 376 273 24 18 chr1 148516539 148516703 -48678729 + GA-rich Low_complexity Low_complexity 2 166 0 2 1718 22 56 0 0 chr1 148517575 148517611 -48677821 + AT_rich Low_complexity Low_complexity 1 36 0 2 1718 23 0 0 0 chr1 148517731 148517754 -48677678 + AT_rich Low_complexity Low_complexity 1 23 0 2 1718 369 330 28 41 chr1 148518069 148518287 -48677145 - B3 SINE B2 0 216 2 2 1718 20863 16 5 0 chr1 148518488 148521344 -48674088 + L1Md_T LINE L1 3469 6338 -244 3 1718 654 294 22 49 chr1 148521347 148521752 -48673680 - L1M2 LINE L1 -1320 4823 4430 3 1718 248 279 114 9 chr1 148522059 148522164 -48673268 + ORR1E LTR MaLR 18 133 -226 3 1718 1351 281 80 17 chr1 148522874 148523047 -48672385 - L1_Rod LINE L1 -110 5737 5535 3 1718 252 59 0 0 chr1 148523047 148523081 -48672351 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1718 1351 281 80 17 chr1 148523081 148523381 -48672051 - L1_Rod LINE L1 -313 5534 5234 3 1718 1283 208 104 14 chr1 148523397 148523743 -48671689 - RMER16 LTR ERVK 0 533 157 3 1718 438 69 0 0 chr1 148526481 148526539 -48668893 + (T)n Simple_repeat Simple_repeat 1 58 0 3 1718 1106 75 0 0 chr1 148526539 148526685 -48668747 - B1_Mus1 SINE Alu 0 148 3 3 1718 1008 78 0 0 chr1 148526846 148526974 -48668458 - Lx3_Mus LINE L1 -560 6449 6322 3 1718 4084 92 23 0 chr1 148526982 148527558 -48667874 + Lx3_Mus LINE L1 6421 7009 0 3 1718 26 30 0 0 chr1 148528227 148528260 -48667172 + AT_rich Low_complexity Low_complexity 1 33 0 3 1718 21 0 0 0 chr1 148530164 148530185 -48665247 + AT_rich Low_complexity Low_complexity 1 21 0 4 1718 21 36 0 0 chr1 148531855 148531883 -48663549 + AT_rich Low_complexity Low_complexity 1 28 0 4 1718 3313 233 83 16 chr1 148532513 148533344 -48662088 + Lx5 LINE L1 6164 7050 0 4 1718 24 53 0 0 chr1 148533373 148533411 -48662021 + AT_rich Low_complexity Low_complexity 1 38 0 4 1718 27 0 0 0 chr1 148534025 148534052 -48661380 + AT_rich Low_complexity Low_complexity 1 27 0 4 1718 423 0 0 0 chr1 148534339 148534386 -48661046 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1718 279 0 0 0 chr1 148534386 148534416 -48661016 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1718 274 348 42 35 chr1 148534441 148534584 -48660848 - B3A SINE B2 -54 144 1 4 1718 6163 186 39 19 chr1 148534760 148536100 -48659332 - Lx2B LINE L1 -18 6982 5617 4 1718 1614 213 83 11 chr1 148536100 148536451 -48658981 - ORR1C2 LTR MaLR -8 376 1 4 1718 366 266 109 21 chr1 148536937 148537175 -48658257 - Lx9 LINE L1 -1 7643 7385 5 1718 478 351 19 5 chr1 148537184 148537390 -48658042 - B3 SINE B2 -7 209 1 5 1718 21 0 0 0 chr1 148537398 148537419 -48658013 + AT_rich Low_complexity Low_complexity 1 21 0 5 1718 1351 155 12 8 chr1 148538104 148538351 -48657081 + Lx LINE L1 6402 6649 -5 5 1718 24 67 0 0 chr1 148538389 148538434 -48656998 + AT_rich Low_complexity Low_complexity 1 45 0 5 1718 225 0 0 0 chr1 148538483 148538508 -48656924 + (TGG)n Simple_repeat Simple_repeat 1 25 0 5 1718 1043 78 35 0 chr1 148538518 148538660 -48656772 - B1_Mus1 SINE Alu 0 148 2 5 1718 369 294 110 24 chr1 148539021 148539230 -48656202 + L1M2 LINE L1 4836 5062 -1081 5 1718 22 56 0 0 chr1 148539232 148539268 -48656164 + AT_rich Low_complexity Low_complexity 1 36 0 5 1718 271 20 0 39 chr1 148539367 148539418 -48656014 + L1_Mus4 LINE L1 6588 6636 0 5 1718 994 244 21 4 chr1 148539445 148539680 -48655752 - Lx9 LINE L1 -298 7346 7108 5 1718 721 203 121 9 chr1 148539683 148539812 -48655620 + Lx9 LINE L1 7355 7500 -144 5 1718 180 77 0 0 chr1 148539812 148539838 -48655594 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1718 721 203 121 9 chr1 148539838 148539932 -48655500 + Lx9 LINE L1 7501 7603 -41 5 1718 1566 233 11 72 chr1 148539941 148540316 -48655116 + ORR1B1 LTR MaLR 43 394 0 6 1718 219 139 0 0 chr1 148540487 148540523 -48654909 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1718 225 291 0 76 chr1 148540523 148540642 -48654790 - RMER21B LTR ERV1 -437 405 296 6 1718 180 0 0 0 chr1 148541604 148541624 -48653808 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1718 1061 59 0 0 chr1 148541707 148541843 -48653589 + B1_Mus1 SINE Alu 13 148 0 6 1718 507 0 0 0 chr1 148542113 148542200 -48653232 - L1Md_T LINE L1 0 6582 6520 6 1718 205 28 56 0 chr1 148542200 148542211 -48653221 + (TTTA)n Simple_repeat Simple_repeat 4 14 0 6 1718 314 102 41 0 chr1 148542216 148542265 -48653167 - MT2C_Mm LTR ERVL -424 51 1 6 1718 3949 149 42 84 chr1 148542405 148542671 -48652761 + RLTR22_Mus LTR ERVK 20 301 -1507 6 1718 2440 103 21 3 chr1 148542671 148543049 -48652383 - L1_Mus3 LINE L1 -7 6631 6247 7 1718 3949 149 42 84 chr1 148543049 148543629 -48651803 + RLTR22_Mus LTR ERVK 302 831 -977 6 1718 5700 150 14 14 chr1 148543644 148543657 -48651775 - Lx3A LINE L1 -2 6979 6967 7 1718 1296 69 0 0 chr1 148543657 148543891 -48651541 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 7 1718 5700 150 14 14 chr1 148543891 148544914 -48650518 - Lx3A LINE L1 -15 6966 5941 7 1718 3161 150 27 64 chr1 148544914 148545505 -48649927 + RLTR22_Mur LTR ERVK 1278 1846 -2 7 1718 40 37 0 0 chr1 148545519 148545573 -48649859 + AT_rich Low_complexity Low_complexity 1 54 0 7 1718 211 255 0 0 chr1 148545898 148545949 -48649483 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1718 736 261 48 19 chr1 148546973 148547180 -48648252 + Lx2B LINE L1 6774 6986 -14 7 1718 219 114 0 43 chr1 148547188 148547234 -48648198 + A-rich Low_complexity Low_complexity 5 48 0 7 1718 3382 213 9 11 chr1 148549058 148549813 -48645619 - Lx3C LINE L1 -2 6974 6221 7 1718 225 0 0 0 chr1 148550160 148550185 -48645247 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1718 31 44 0 0 chr1 148550831 148550876 -48644556 + AT_rich Low_complexity Low_complexity 1 45 0 8 1718 186 68 91 0 chr1 148552367 148552411 -48643021 + (TTATA)n Simple_repeat Simple_repeat 1 48 0 8 1718 342 0 0 0 chr1 148553478 148553516 -48641916 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1718 261 0 0 0 chr1 148553516 148553544 -48641888 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1718 386 248 19 105 chr1 148553560 148553722 -48641710 + MTE2a LTR MaLR 119 266 -113 8 1718 364 217 11 46 chr1 148554056 148554143 -48641289 + B1_Mus1 SINE Alu 30 113 -35 8 1718 300 107 0 0 chr1 148554404 148554460 -48640972 - Lx LINE L1 0 6654 6599 8 1718 220 307 26 26 chr1 148554661 148554738 -48640694 + B4 SINE B4 7 83 -209 8 1718 218 206 15 0 chr1 148555334 148555402 -48640030 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1718 205 186 0 0 chr1 148556601 148556644 -48638788 + T-rich Low_complexity Low_complexity 1 43 0 8 1718 899 321 37 42 chr1 148557175 148557529 -48637903 - MTE2a LTR MaLR -26 353 2 9 1718 453 66 0 0 chr1 148558731 148558792 -48636640 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1718 281 326 117 34 chr1 148559191 148559726 -48635706 - L1MB8 LINE L1 -22 7016 6435 9 1718 329 317 129 32 chr1 148559845 148560278 -48635154 - L1MB8 LINE L1 -753 6278 5804 9 1718 237 366 51 8 chr1 148560586 148560842 -48634590 - L1MB8 LINE L1 -1888 5118 4852 9 1718 262 284 38 19 chr1 148560923 148561081 -48634351 - L1MB8 LINE L1 -2711 4295 4135 9 1718 673 340 0 31 chr1 148561778 148562000 -48633432 - B3 SINE B2 0 216 2 9 1718 260 318 52 19 chr1 148562001 148562155 -48633277 - L1MB8 LINE L1 -5829 1505 1347 9 1718 28 29 0 0 chr1 148562958 148562993 -48632439 + AT_rich Low_complexity Low_complexity 1 35 0 9 1718 354 321 36 9 chr1 148563013 148563123 -48632309 - RSINE1 SINE B4 -22 143 31 9 1718 270 331 0 28 chr1 148563869 148563982 -48631450 + A-rich Low_complexity Low_complexity 1 112 0 9 1718 4013 55 0 15 chr1 148563982 148564547 -48630885 + L1Md_F2 LINE L1 6054 6582 0 9 1718 225 0 0 0 chr1 148565579 148565604 -48629828 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1718 216 233 0 0 chr1 148565826 148565869 -48629563 + B3A SINE B2 8 50 -148 9 1718 25 0 0 0 chr1 148565959 148565984 -48629448 + AT_rich Low_complexity Low_complexity 1 25 0 1 1718 369 352 5 50 chr1 148566836 148567057 -48628375 + B3 SINE B2 1 211 -5 1 1718 677 129 0 92 chr1 148567139 148567292 -48628140 - L1Md_F2 LINE L1 -2 6580 6442 1 1718 23 54 0 0 chr1 148568745 148568782 -48626650 + AT_rich Low_complexity Low_complexity 1 37 0 1 1718 22 35 0 0 chr1 148568896 148568925 -48626507 + AT_rich Low_complexity Low_complexity 1 29 0 1 1718 22 35 0 0 chr1 148569509 148569538 -48625894 + AT_rich Low_complexity Low_complexity 1 29 0 1 1718 519 240 33 0 chr1 148570034 148570155 -48625277 + B3 SINE B2 1 125 -91 1 1718 21 36 0 0 chr1 148570215 148570243 -48625189 + AT_rich Low_complexity Low_complexity 1 28 0 1 1718 1451 260 52 78 chr1 148570279 148570931 -48624501 - RMER6C LTR ERVK -55 635 1 1 1718 251 268 18 0 chr1 148571127 148571183 -48624249 + ID_B1 SINE B4 137 193 -31 1 1718 327 113 0 0 chr1 148571814 148571867 -48623565 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 1 1718 21 36 0 0 chr1 148572030 148572058 -48623374 + GC_rich Low_complexity Low_complexity 1 28 0 1 1718 200 208 19 0 chr1 148572076 148572129 -48623303 + (CGG)n Simple_repeat Simple_repeat 1 54 0 1 1718 23 0 0 0 chr1 148576588 148576611 -48618821 + AT_rich Low_complexity Low_complexity 1 23 0 1 1718 210 118 0 0 chr1 148577067 148577101 -48618331 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1718 225 94 0 0 chr1 148577134 148577166 -48618266 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1718 7267 115 19 6 chr1 148578265 148580141 -48615291 + L1_Mus3 LINE L1 4734 6636 -2 1 1718 362 342 26 0 chr1 148582041 148582158 -48613274 + RSINE1 SINE B4 3 122 -43 1 1718 231 36 0 0 chr1 148582160 148582188 -48613244 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1718 1265 141 119 0 chr1 148582257 148582484 -48612948 + Lx2 LINE L1 6744 6997 0 1 1718 955 131 0 0 chr1 148582491 148582636 -48612796 + B1_Mus1 SINE Alu 1 145 -3 1 1718 258 32 0 0 chr1 148582636 148582667 -48612765 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1718 22 56 0 0 chr1 148583185 148583221 -48612211 + AT_rich Low_complexity Low_complexity 1 36 0 1 1718 498 261 69 0 chr1 148583824 148583954 -48611478 - B1_Mur2 SINE Alu -5 144 6 1 1718 237 33 0 0 chr1 148584000 148584030 -48611402 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1718 302 379 7 65 chr1 148584064 148584219 -48611213 + B3A SINE B2 40 185 -13 1 1718 1406 119 0 22 chr1 148584716 148584939 -48610493 + Lx3C LINE L1 6442 6659 -317 1 1718 191 88 0 29 chr1 148585303 148585338 -48610094 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1 1718 180 294 22 45 chr1 148586432 148586521 -48608911 + L2 LINE L2 2274 2360 -1059 1 1718 639 65 46 0 chr1 148586778 148586886 -48608546 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 1 1718 243 103 0 0 chr1 148588034 148588073 -48607359 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1718 6977 184 21 5 chr1 148588181 148590413 -48605019 + Lx2B LINE L1 4721 6990 -10 1 1718 201 167 0 0 chr1 148590422 148590458 -48604974 + A-rich Low_complexity Low_complexity 1 36 0 1 1718 3142 299 34 23 chr1 148590512 148591670 -48603762 - Lx9 LINE L1 -165 7479 6310 1 1718 225 0 0 0 chr1 148592228 148592253 -48603179 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1718 22 35 0 0 chr1 148592605 148592634 -48602798 + AT_rich Low_complexity Low_complexity 1 29 0 1 1718 246 32 0 0 chr1 148592682 148592713 -48602719 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 1 1718 1089 56 21 0 chr1 148592713 148592856 -48602576 - B1_Mm SINE Alu 0 147 2 1 1718 272 300 60 60 chr1 148593807 148593956 -48601476 + B3 SINE B2 1 149 -46 1 1718 703 113 27 0 chr1 148593963 148594113 -48601319 + (TTTC)n Simple_repeat Simple_repeat 4 157 0 1 1718 27 29 0 0 chr1 148595301 148595335 -48600097 + AT_rich Low_complexity Low_complexity 1 34 0 1 1718 237 196 0 0 chr1 148595410 148595466 -48599966 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1 1718 225 0 0 0 chr1 148595473 148595498 -48599934 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1718 22 35 0 0 chr1 148595577 148595606 -48599826 + AT_rich Low_complexity Low_complexity 1 29 0 1 1718 409 300 120 52 chr1 148595640 148595935 -48599497 - Lx9 LINE L1 -77 7567 7247 1 1718 225 0 0 0 chr1 148595935 148595960 -48599472 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 1718 409 300 120 52 chr1 148595960 148596072 -48599360 - Lx9 LINE L1 -398 7246 7133 1 1718 322 289 11 0 chr1 148596097 148596187 -48599245 - Lx9 LINE L1 -600 7044 6954 1 1718 1014 75 0 0 chr1 148596261 148596395 -48599037 + B1_Mus2 SINE Alu 2 135 -12 1 1718 189 0 0 0 chr1 148596396 148596417 -48599015 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1718 23 0 0 0 chr1 148597113 148597136 -48598296 + AT_rich Low_complexity Low_complexity 1 23 0 1 1718 310 328 86 23 chr1 148597695 148597870 -48597562 - HAL1-3A_ME LINE L1 -389 2469 2284 1 1718 546 193 7 20 chr1 148597870 148598023 -48597409 + CT-rich Low_complexity Low_complexity 4 154 0 1 1718 21 0 0 0 chr1 148598166 148598187 -48597245 + AT_rich Low_complexity Low_complexity 1 21 0 1 1718 1036 56 0 27 chr1 148599391 148599538 -48595894 + B1_Mus2 SINE Alu 5 147 0 1 1718 341 67 0 82 chr1 148599538 148599636 -48595796 + (CAAAA)n Simple_repeat Simple_repeat 1 90 0 1 1718 420 37 0 0 chr1 148601217 148601271 -48594161 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1718 264 30 0 0 chr1 148601474 148601507 -48593925 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1718 345 47 0 0 chr1 148601507 148601549 -48593883 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1718 340 333 59 20 chr1 148601560 148601762 -48593670 + Lx9 LINE L1 7195 7404 -240 1 1718 308 300 46 81 chr1 148601907 148602081 -48593351 - L1M2 LINE L1 -1913 4230 4063 1 1718 513 296 116 29 chr1 148602131 148602476 -48592956 + L1MA6 LINE L1 5021 5395 -748 1 1718 361 223 58 10 chr1 148602717 148602821 -48592611 + L1MA6 LINE L1 5817 5925 -375 1 1718 7156 68 5 23 chr1 148603305 148604638 -48590794 - L1Md_F2 LINE L1 0 6582 5288 1 1718 34049 70 9 5 chr1 148604632 148610625 -48584807 - L1Md_T LINE L1 -1 6581 566 1 1718 33 0 0 0 chr1 148611572 148611605 -48583827 + AT_rich Low_complexity Low_complexity 1 33 0 1 1718 351 0 0 0 chr1 148612568 148612607 -48582825 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 1718 227 298 0 0 chr1 148612679 148612736 -48582696 + ID4_ SINE ID 25 81 -2 1 1718 242 340 40 0 chr1 148612736 148612836 -48582596 + ID_B1 SINE B4 98 201 -23 1 1718 360 43 0 0 chr1 148612864 148612910 -48582522 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1718 198 0 0 0 chr1 148612930 148612952 -48582480 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 1 1718 639 158 7 14 chr1 148612978 148613126 -48582306 + CT-rich Low_complexity Low_complexity 2 148 0 1 1718 550 245 14 21 chr1 148613129 148613271 -48582161 - B1_Mur3 SINE Alu 0 149 9 1 1718 507 133 255 0 chr1 148614088 148614186 -48581246 + B1_Mus1 SINE Alu 5 127 -21 1 1718 357 162 0 0 chr1 148614188 148614256 -48581176 + A-rich Low_complexity Low_complexity 1 68 0 1 1718 216 24 73 0 chr1 148614630 148614671 -48580761 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1718 1557 176 99 12 chr1 148615022 148615367 -48580065 - Lx LINE L1 0 6997 6623 1 1718 301 200 0 0 chr1 148615391 148615446 -48579986 - Lx LINE L1 -682 5972 5918 1 1718 6570 143 26 12 chr1 148615446 148617136 -48578296 - Lx LINE L1 0 6654 4933 1 1718 1118 95 0 0 chr1 148617136 148617284 -48578148 + B1_Mus1 SINE Alu 1 148 0 1 1718 6372 171 17 18 chr1 148617284 148617537 -48577895 - Lx LINE L1 -951 4932 4691 1 1718 34 0 0 0 chr1 148617876 148617910 -48577522 + AT_rich Low_complexity Low_complexity 1 34 0 1 1718 21 0 0 0 chr1 148619165 148619186 -48576246 + AT_rich Low_complexity Low_complexity 1 21 0 1 1718 23 33 0 0 chr1 148619881 148619911 -48575521 + AT_rich Low_complexity Low_complexity 1 30 0 1 1718 1619 129 10 10 chr1 148620082 148620371 -48575061 - Lx LINE L1 -3 6651 6363 1 1718 760 96 19 0 chr1 148620374 148620478 -48574954 + Lx LINE L1 6167 6272 -382 1 1718 22 35 0 0 chr1 148620669 148620698 -48574734 + AT_rich Low_complexity Low_complexity 1 29 0 1 1718 377 228 6 18 chr1 148621007 148621172 -48574260 + (TA)n Simple_repeat Simple_repeat 2 164 0 1 1718 247 193 24 0 chr1 148621222 148621305 -48574127 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 1718 1416 118 45 0 chr1 148621506 148621727 -48573705 - L1Md_F2 LINE L1 -12 6570 6340 1 1718 285 284 35 47 chr1 148622141 148622226 -48573206 + MLT1I LTR MaLR 55 138 -273 1 1718 335 283 72 40 chr1 148622751 148622876 -48572556 - ID_B1 SINE B4 -9 215 87 1 1718 299 204 122 17 chr1 148623908 148624023 -48571409 - Lx9 LINE L1 -13 7631 7505 1 1718 21 36 0 0 chr1 148624819 148624847 -48570585 + AT_rich Low_complexity Low_complexity 1 28 0 1 1718 1719 169 7 3 chr1 148625324 148625632 -48569800 + Lx LINE L1 6339 6647 -7 1 1718 537 58 0 0 chr1 148626992 148627061 -48568371 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1718 912 163 157 0 chr1 148628642 148628820 -48566612 - RMER6D LTR ERVK -514 206 1 1 1718 22 56 0 0 chr1 148629436 148629472 -48565960 + AT_rich Low_complexity Low_complexity 1 36 0 1 1718 271 144 10 40 chr1 148631280 148631381 -48564051 + (TTTG)n Simple_repeat Simple_repeat 3 100 0 1 1718 260 302 165 85 chr1 148631646 148631870 -48563562 - MER67D LTR ERV1 -269 245 4 1 1718 1524 221 77 28 chr1 148632535 148632926 -48562506 - Lx6 LINE L1 -500 6960 6551 1 1718 23 54 0 0 chr1 148632948 148632985 -48562447 + AT_rich Low_complexity Low_complexity 1 37 0 1 1718 207 0 0 0 chr1 148633192 148633215 -48562217 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1718 351 0 0 0 chr1 148633247 148633286 -48562146 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1718 7921 155 19 5 chr1 148633314 148634646 -48560786 - Lx3B LINE L1 -1 6972 5623 1 1718 659 131 15 8 chr1 148634675 148634806 -48560626 + Lx LINE L1 6523 6654 0 1 1718 339 357 81 12 chr1 148635275 148635455 -48559977 + B3A SINE B2 2 186 -30 1 1718 25 51 0 0 chr1 148635480 148635519 -48559913 + AT_rich Low_complexity Low_complexity 1 39 0 2 1719 180 398 31 0 chr1 148636016 148636144 -48559288 - MER5B DNA MER1_type -26 152 21 2 1719 211 150 0 24 chr1 148636461 148636502 -48558930 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 1719 542 190 0 8 chr1 148636544 148636661 -48558771 + CT-rich Low_complexity Low_complexity 1 116 0 2 1719 4861 198 120 82 chr1 148636676 148637048 -48558384 - Lx5 LINE L1 -39 7011 6600 2 1719 236 337 58 0 chr1 148637048 148637134 -48558298 - RLTR20B3 LTR ERVK -372 205 115 2 1719 4861 198 120 82 chr1 148637134 148638071 -48557361 - Lx5 LINE L1 -39 6599 5559 2 1719 249 33 0 0 chr1 148638071 148638101 -48557331 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1719 3120 204 35 4 chr1 148638101 148638505 -48556927 - Lx5 LINE L1 -319 5558 5142 2 1719 696 89 0 0 chr1 148638765 148638866 -48556566 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1719 187 237 21 0 chr1 148638900 148638993 -48556439 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1719 466 233 164 0 chr1 148639280 148639396 -48556036 + B1_Mur3 SINE Alu 9 143 -6 2 1719 431 113 0 14 chr1 148639396 148639457 -48555975 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 2 1719 1224 57 11 17 chr1 148639457 148639636 -48555796 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 1719 431 113 0 14 chr1 148639636 148639646 -48555786 + (GGAA)n Simple_repeat Simple_repeat 3 12 0 2 1719 1269 284 76 33 chr1 148639680 148640442 -48554990 + L1M2 LINE L1 3581 4375 -1768 2 1719 333 316 33 27 chr1 148640652 148640924 -48554508 - L1MA4 LINE L1 -277 6026 5764 2 1719 254 330 136 31 chr1 148641070 148641261 -48554171 - B3 SINE B2 -4 212 2 2 1719 617 25 13 0 chr1 148642462 148642541 -48552891 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 2 1719 335 162 20 20 chr1 148642823 148642924 -48552508 + CT-rich Low_complexity Low_complexity 2 102 0 2 1719 2965 218 31 22 chr1 148643503 148643854 -48551578 - RMER6D LTR ERVK -4 716 363 2 1719 624 50 0 0 chr1 148643854 148643934 -48551498 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1719 2965 218 31 22 chr1 148643934 148644292 -48551140 - RMER6D LTR ERVK -358 362 2 2 1719 207 69 0 0 chr1 148644531 148644560 -48550872 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1719 330 247 58 101 chr1 148644824 148645013 -48550419 + L1MDa LINE L1 2327 2507 -4126 2 1719 2334 62 3 9 chr1 148645083 148645408 -48550024 - L1_Mus2 LINE L1 0 6566 6244 2 1719 282 219 0 0 chr1 148645658 148645722 -48549710 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 2 1719 297 0 0 0 chr1 148648567 148648600 -48546832 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1719 236 379 88 16 chr1 148648777 148648970 -48546462 + MLT1J-int LTR MaLR 987 1193 -194 2 1719 325 259 201 21 chr1 148649676 148649865 -48545567 + Lx9 LINE L1 7406 7628 -16 2 1719 27 29 0 0 chr1 148650765 148650799 -48544633 + AT_rich Low_complexity Low_complexity 1 34 0 2 1719 2526 79 11 27 chr1 148651319 148651685 -48543747 - L1_Mus2 LINE L1 -1 6565 6206 2 1719 1767 146 68 0 chr1 148651708 148652003 -48543429 - ORR1A2 LTR MaLR -12 315 1 2 1719 2402 118 74 37 chr1 148652922 148653380 -48542052 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1719 302 319 53 46 chr1 148653955 148654257 -48541175 - L1M2 LINE L1 -688 5603 5300 2 1719 302 361 25 45 chr1 148654275 148654475 -48540957 - L1M2 LINE L1 -863 5280 5085 2 1719 234 62 0 0 chr1 148654478 148654510 -48540922 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1719 727 311 65 10 chr1 148654510 148654909 -48540523 - L1M2 LINE L1 -1053 5090 4670 2 1719 213 167 16 48 chr1 148656000 148656063 -48539369 + (TAA)n Simple_repeat Simple_repeat 2 62 0 2 1719 201 274 16 0 chr1 148656186 148656248 -48539184 + CT-rich Low_complexity Low_complexity 1 63 0 2 1719 504 252 160 92 chr1 148656261 148656523 -48538909 - RLTR25B LTR ERVK -2 1026 747 2 1719 180 277 0 41 chr1 148656627 148656676 -48538756 - L3 LINE CR1 -1928 2561 2515 2 1719 2161 277 78 28 chr1 148656797 148657510 -48537922 - Lx6 LINE L1 -115 7345 6597 2 1719 222 37 0 0 chr1 148657600 148657627 -48537805 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1719 21 36 0 0 chr1 148658495 148658523 -48536909 + AT_rich Low_complexity Low_complexity 1 28 0 2 1719 225 227 0 0 chr1 148658897 148658941 -48536491 + MIRb SINE MIR 217 260 -8 2 1719 249 313 60 38 chr1 148659031 148659164 -48536268 - MLT1N2 LTR MaLR -55 507 372 2 1719 385 270 63 46 chr1 148659358 148659595 -48535837 - Lx7 LINE L1 -7 7689 7449 2 1719 306 289 73 73 chr1 148659626 148659805 -48535627 - Lx7 LINE L1 -387 7309 7131 2 1719 189 154 0 0 chr1 148659980 148660019 -48535413 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2 1719 240 259 0 0 chr1 148660402 148660456 -48534976 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1719 180 0 0 0 chr1 148661102 148661122 -48534310 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1719 1262 340 19 9 chr1 148661127 148661590 -48533842 - Lx6 LINE L1 -46 7414 6947 2 1719 23 78 0 0 chr1 148661663 148661714 -48533718 + AT_rich Low_complexity Low_complexity 1 51 0 2 1719 540 0 0 0 chr1 148662569 148662629 -48532803 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1719 22 35 0 0 chr1 148662788 148662817 -48532615 + AT_rich Low_complexity Low_complexity 1 29 0 2 1719 25 0 0 0 chr1 148662902 148662927 -48532505 + AT_rich Low_complexity Low_complexity 1 25 0 2 1719 29401 74 18 13 chr1 148663622 148669856 -48525576 - L1Md_F3 LINE L1 -16 6571 297 2 1719 2683 27 9 18 chr1 148669861 148670197 -48525235 - L1Md_F3 LINE L1 -13 6571 6239 2 1719 189 0 0 0 chr1 148670333 148670354 -48525078 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1719 23 33 0 0 chr1 148670440 148670470 -48524962 + AT_rich Low_complexity Low_complexity 1 30 0 2 1719 1141 90 11 0 chr1 148670718 148670895 -48524537 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2 1719 612 302 99 35 chr1 148672186 148672683 -48522749 + L1_Rod LINE L1 5308 5829 -18 2 1719 641 133 42 37 chr1 148672923 148673181 -48522251 + GA-rich Low_complexity Low_complexity 1 259 0 2 1719 1119 129 0 0 chr1 148673181 148673359 -48522073 + (GGA)n Simple_repeat Simple_repeat 3 180 0 2 1719 1073 96 6 17 chr1 148673368 148673549 -48521883 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1719 415 186 19 31 chr1 148673549 148673579 -48521853 + polypurine Low_complexity Low_complexity 126 157 0 2 1719 232 353 68 10 chr1 148673662 148673765 -48521667 + B1F SINE Alu 17 125 -24 2 1719 626 305 55 0 chr1 148674803 148675003 -48520429 - B3 SINE B2 -5 211 1 2 1719 23 33 0 0 chr1 148676037 148676067 -48519365 + AT_rich Low_complexity Low_complexity 1 30 0 2 1719 22 0 0 0 chr1 148676496 148676518 -48518914 + AT_rich Low_complexity Low_complexity 1 22 0 2 1719 4361 110 25 9 chr1 148676520 148677187 -48518245 - Lx3A LINE L1 -5 6976 6299 2 1719 315 299 59 17 chr1 148677215 148677349 -48518083 - Lx8 LINE L1 -546 6927 6778 2 1719 1536 143 102 47 chr1 148677345 148677541 -48517891 + Lx LINE L1 6314 6518 -136 2 1719 396 0 0 0 chr1 148677541 148677585 -48517847 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1719 1536 143 102 47 chr1 148677585 148677710 -48517722 + Lx LINE L1 6519 6653 -1 2 1719 323 296 35 17 chr1 148677709 148677837 -48517595 - Lx8 LINE L1 -922 6774 6641 2 1719 1411 73 9 24 chr1 148678063 148678273 -48517159 + L1_Mus2 LINE L1 6359 6565 -1 2 1719 339 244 62 62 chr1 148679856 148680074 -48515358 - L1M4 LINE L1 -365 5808 5598 2 1719 288 77 0 0 chr1 148680232 148680271 -48515161 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1719 208 254 0 0 chr1 148680501 148680556 -48514876 + T-rich Low_complexity Low_complexity 1 55 0 2 1719 24 0 0 0 chr1 148680785 148680809 -48514623 + AT_rich Low_complexity Low_complexity 1 24 0 2 1719 291 54 0 0 chr1 148680823 148680860 -48514572 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1719 808 165 6 0 chr1 148680922 148681080 -48514352 - Lx2 LINE L1 0 6997 6839 2 1719 2102 164 50 0 chr1 148681080 148681464 -48513968 - Lx2 LINE L1 -313 6684 6282 2 1719 64 71 0 0 chr1 148681986 148682113 -48513319 + AT_rich Low_complexity Low_complexity 1 127 0 2 1719 896 310 117 22 chr1 148682321 148683217 -48512215 - Charlie1 DNA MER1_type -422 2359 1387 2 1719 1216 41 0 0 chr1 148683513 148683659 -48511773 + B1_Mm SINE Alu 2 147 0 2 1719 207 0 0 0 chr1 148683659 148683682 -48511750 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1719 21 71 0 0 chr1 148684022 148684064 -48511368 + AT_rich Low_complexity Low_complexity 1 42 0 2 1719 711 299 63 12 chr1 148684187 148684441 -48510991 - Lx6 LINE L1 -164 7296 7030 2 1719 24 0 0 0 chr1 148684487 148684511 -48510921 + AT_rich Low_complexity Low_complexity 1 24 0 2 1719 1606 193 35 58 chr1 148684817 148685163 -48510269 - ORR1B2 LTR MaLR -25 342 5 2 1719 1170 234 54 96 chr1 148685341 148685565 -48509867 - ORR1D1 LTR MaLR -3 371 164 2 1719 249 33 0 0 chr1 148685565 148685595 -48509837 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1719 216 67 0 0 chr1 148685603 148685633 -48509799 + (CAA)n Simple_repeat Simple_repeat 3 32 0 2 1719 1170 234 54 96 chr1 148685633 148685786 -48509646 - ORR1D1 LTR MaLR -211 163 1 2 1719 1378 129 0 0 chr1 148685807 148686024 -48509408 - Lx2 LINE L1 -6 6991 6775 2 1719 2000 84 0 14 chr1 148686024 148686302 -48509130 - Lx2 LINE L1 -354 6643 6370 2 1719 794 297 28 31 chr1 148686559 148686996 -48508436 + RLTR20D LTR ERVK 1 551 0 2 1719 285 29 0 0 chr1 148687214 148687248 -48508184 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1719 29 0 0 0 chr1 148687355 148687384 -48508048 + AT_rich Low_complexity Low_complexity 1 29 0 2 1719 28 48 0 0 chr1 148687412 148687454 -48507978 + AT_rich Low_complexity Low_complexity 1 42 0 2 1719 227 163 23 23 chr1 148687989 148688033 -48507399 - URR1B DNA MER1_type 0 225 182 2 1719 33 25 0 0 chr1 148688169 148688209 -48507223 + AT_rich Low_complexity Low_complexity 1 40 0 2 1719 221 347 27 0 chr1 148689134 148689209 -48506223 - MIR SINE MIR -2 260 184 2 1719 317 323 42 48 chr1 148689467 148689633 -48505799 + B2_Mm2 SINE B2 1 165 -30 2 1719 318 194 0 0 chr1 148689699 148689766 -48505666 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1719 562 306 123 35 chr1 148689818 148690554 -48504878 - L1M2 LINE L1 -2088 4055 3223 2 1719 229 344 74 26 chr1 148690651 148690881 -48504551 + Lx8 LINE L1 6852 7092 -381 2 1719 29 70 0 0 chr1 148691762 148691819 -48503613 + AT_rich Low_complexity Low_complexity 1 57 0 2 1719 22 56 0 0 chr1 148692122 148692158 -48503274 + AT_rich Low_complexity Low_complexity 1 36 0 3 1719 21 0 0 0 chr1 148693476 148693497 -48501935 + AT_rich Low_complexity Low_complexity 1 21 0 3 1719 25 31 0 0 chr1 148693665 148693697 -48501735 + AT_rich Low_complexity Low_complexity 1 32 0 3 1719 967 234 150 22 chr1 148693757 148693885 -48501547 - Lx6 LINE L1 -7 7453 7319 3 1719 243 0 0 0 chr1 148693885 148693912 -48501520 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1719 967 234 150 22 chr1 148693912 148694097 -48501335 - Lx6 LINE L1 -142 7318 7101 3 1719 336 48 0 0 chr1 148694355 148694397 -48501035 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1719 30 59 0 0 chr1 148694742 148694793 -48500639 + AT_rich Low_complexity Low_complexity 1 51 0 3 1719 225 240 0 0 chr1 148696476 148696526 -48498906 - L1MC LINE L1 -571 5762 5713 3 1719 27 0 0 0 chr1 148696652 148696679 -48498753 + AT_rich Low_complexity Low_complexity 1 27 0 3 1719 363 78 32 32 chr1 148697860 148697953 -48497479 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1719 297 0 0 0 chr1 148698310 148698343 -48497089 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1719 25 65 0 0 chr1 148698407 148698453 -48496979 + AT_rich Low_complexity Low_complexity 1 46 0 3 1719 689 280 46 39 chr1 148698495 148698800 -48496632 - RLTR15 LTR ERVK -52 307 1 3 1719 4068 228 70 40 chr1 148699655 148701081 -48494351 - Lx5 LINE L1 -1 7057 5536 3 1719 42 48 0 0 chr1 148701125 148701188 -48494244 + AT_rich Low_complexity Low_complexity 1 63 0 3 1719 23 68 0 0 chr1 148701246 148701290 -48494142 + AT_rich Low_complexity Low_complexity 1 44 0 3 1719 467 186 78 0 chr1 148702667 148702769 -48492663 + Lx3_Mus LINE L1 6892 7001 -8 3 1719 25 31 0 0 chr1 148703072 148703104 -48492328 + AT_rich Low_complexity Low_complexity 1 32 0 3 1719 640 303 26 5 chr1 148703237 148703426 -48492006 + MIR3 SINE MIR 16 208 0 3 1719 1296 71 0 11 chr1 148704258 148704444 -48490988 - L1_Mus2 LINE L1 0 6566 6383 3 1719 446 283 86 11 chr1 148704444 148704619 -48490813 - Lx7 LINE L1 -471 7225 7038 3 1719 25 0 0 0 chr1 148705088 148705113 -48490319 + AT_rich Low_complexity Low_complexity 1 25 0 3 1719 1293 196 18 7 chr1 148705113 148705386 -48490046 - Lx4A LINE L1 -3 7055 6780 3 1719 399 157 0 0 chr1 148705386 148705456 -48489976 - Lx4A LINE L1 -1213 5845 5776 3 1719 9426 164 70 84 chr1 148705457 148705725 -48489707 - Lx4A LINE L1 -888 4989 4732 3 1719 4731 44 15 0 chr1 148705725 148706311 -48489121 - L1Md_F3 LINE L1 -17 6567 5973 3 1719 9426 164 70 84 chr1 148706311 148706528 -48488904 - Lx4A LINE L1 -1146 4731 4493 3 1719 1142 82 0 7 chr1 148706528 148706676 -48488756 + B1_Mus2 SINE Alu 1 147 0 3 1719 9426 164 70 84 chr1 148706676 148707920 -48487512 - Lx4A LINE L1 -1385 4492 3178 3 1719 204 40 0 0 chr1 148707920 148707945 -48487487 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1719 1234 41 0 0 chr1 148707945 148708091 -48487341 + B1_Mm SINE Alu 2 147 0 3 1719 9426 164 70 84 chr1 148708091 148708867 -48486565 - Lx4A LINE L1 -2700 3177 2517 3 1719 3049 82 5 5 chr1 148709702 148710121 -48485311 - BGLII LTR ERVK -2 419 1 3 1719 37675 44 2 3 chr1 148710488 148716643 -48478789 - L1Md_T LINE L1 -12 6573 334 3 1719 1309 124 0 35 chr1 148716925 148717126 -48478306 - Lx3C LINE L1 -127 6849 6656 3 1719 1010 99 33 0 chr1 148717119 148717271 -48478161 + Lx3B LINE L1 6489 6645 -328 3 1719 565 296 105 20 chr1 148717315 148717611 -48477821 - Lx8 LINE L1 -977 6496 6176 3 1719 21 36 0 0 chr1 148718477 148718505 -48476927 + AT_rich Low_complexity Low_complexity 1 28 0 3 1719 22 56 0 0 chr1 148718775 148718811 -48476621 + AT_rich Low_complexity Low_complexity 1 36 0 3 1719 1759 226 31 68 chr1 148719979 148720563 -48474869 - Lx9 LINE L1 -8 7636 7075 3 1719 22 35 0 0 chr1 148720593 148720622 -48474810 + AT_rich Low_complexity Low_complexity 1 29 0 3 1719 423 0 0 0 chr1 148720819 148720866 -48474566 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1719 36 62 0 0 chr1 148720925 148720989 -48474443 + AT_rich Low_complexity Low_complexity 1 64 0 3 1719 9710 136 21 12 chr1 148721074 148723518 -48471914 + L1VL4 LINE L1 140 2659 -1158 3 1719 7156 191 97 25 chr1 148723518 148723607 -48471825 + L1_Mus2 LINE L1 4112 4199 -1687 3 1719 477 0 0 0 chr1 148723607 148723660 -48471772 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1719 7156 155 69 14 chr1 148723660 148725879 -48469553 + L1_Mus2 LINE L1 4200 6566 0 3 1719 399 354 38 44 chr1 148727085 148727268 -48468164 + B3A SINE B2 1 182 -16 3 1719 242 232 89 44 chr1 148727895 148727985 -48467447 - L1MA9 LINE L1 -40 6272 6179 3 1719 1974 296 128 14 chr1 148729440 148730340 -48465092 - Lx9 LINE L1 -289 7355 6354 3 1719 29 47 0 0 chr1 148732663 148732706 -48462726 + AT_rich Low_complexity Low_complexity 1 43 0 3 1719 1385 246 110 66 chr1 148734179 148734723 -48460709 - RLTR20D LTR ERVK 0 568 1 3 1719 342 271 7 26 chr1 148734814 148734969 -48460463 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 3 1719 512 293 156 52 chr1 148735437 148735787 -48459645 - MTD LTR MaLR 0 379 25 3 1719 290 299 205 5 chr1 148735985 148736170 -48459262 - Lx7 LINE L1 -496 7200 6979 3 1719 957 216 87 8 chr1 148736171 148736410 -48459022 - Lx4B LINE L1 -789 6269 6009 3 1719 728 52 0 10 chr1 148736410 148736508 -48458924 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 3 1719 957 216 87 8 chr1 148736508 148736520 -48458912 - Lx4B LINE L1 -1050 6008 5998 3 1719 277 274 0 0 chr1 148736524 148736619 -48458813 + T-rich Low_complexity Low_complexity 1 95 0 3 1719 677 197 13 33 chr1 148736621 148736773 -48458659 - B1_Mur3 SINE Alu 0 149 1 3 1719 223 337 52 10 chr1 148737040 148737136 -48458296 - PB1 SINE Alu -15 112 13 3 1719 34 0 0 0 chr1 148737807 148737841 -48457591 + AT_rich Low_complexity Low_complexity 1 34 0 3 1719 584 167 12 25 chr1 148738232 148738392 -48457040 + CT-rich Low_complexity Low_complexity 4 161 0 3 1719 206 186 0 0 chr1 148738393 148738423 -48457009 + polypyrimidine Low_complexity Low_complexity 15 44 0 3 1719 306 73 0 0 chr1 148738423 148738464 -48456968 + (TATG)n Simple_repeat Simple_repeat 2 42 0 3 1719 206 186 0 0 chr1 148738464 148738476 -48456956 + polypyrimidine Low_complexity Low_complexity 3 14 0 3 1719 252 100 0 0 chr1 148738493 148738533 -48456899 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1719 26 50 0 0 chr1 148739736 148739776 -48455656 + AT_rich Low_complexity Low_complexity 1 40 0 3 1719 922 327 78 54 chr1 148740406 148740891 -48454541 - Lx6 LINE L1 -75 6975 6479 3 1719 16535 227 44 53 chr1 148740904 148743656 -48451776 - Lx6 LINE L1 -707 6351 3473 3 1719 459 0 0 0 chr1 148743656 148743707 -48451725 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 1719 16535 226 39 55 chr1 148743707 148746355 -48449077 - Lx6 LINE L1 -2408 3472 940 3 1719 285 125 0 0 chr1 148746994 148747050 -48448382 + (T)n Simple_repeat Simple_repeat 1 56 0 3 1719 314 272 15 81 chr1 148747094 148747241 -48448191 - MLT1A1 LTR MaLR 0 408 243 3 1719 1688 161 40 43 chr1 148747329 148747679 -48447753 - Lx2 LINE L1 -1 6996 6648 3 1719 501 32 0 0 chr1 148747856 148747919 -48447513 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1719 303 196 18 0 chr1 148748034 148748090 -48447342 + HAL1-3A_ME LINE L1 1975 2031 -827 3 1719 29 78 0 0 chr1 148750272 148750336 -48445096 + AT_rich Low_complexity Low_complexity 1 64 0 3 1719 333 0 0 0 chr1 148750867 148750904 -48444528 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1719 397 288 131 48 chr1 148751940 148752108 -48443324 - B3A SINE B2 -16 182 1 3 1719 210 174 0 0 chr1 148753007 148753053 -48442379 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1719 2514 0 0 0 chr1 148753132 148753410 -48442022 - L1Md_A LINE L1 -483 6099 5822 3 1719 4136 4 0 2 chr1 148753410 148753875 -48441557 + L1Md_A LINE L1 6117 6580 -2 3 1719 702 220 0 4 chr1 148754144 148754287 -48441145 + B1_Mur2 SINE Alu 7 144 -5 3 1719 24 0 0 0 chr1 148754412 148754436 -48440996 + AT_rich Low_complexity Low_complexity 1 24 0 3 1719 3138 120 4 14 chr1 148754519 148755010 -48440422 + L1_Mus3 LINE L1 6153 6638 0 3 1719 572 73 0 12 chr1 148755012 148755095 -48440337 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 3 1719 21 57 0 0 chr1 148755367 148755402 -48440030 + AT_rich Low_complexity Low_complexity 1 35 0 3 1719 2874 77 2 39 chr1 148756400 148756807 -48438625 - L1_Mus2 LINE L1 -2 6564 6173 3 1719 233 29 0 29 chr1 148757580 148757615 -48437817 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1719 432 0 0 0 chr1 148757707 148757755 -48437677 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 1719 7628 118 58 30 chr1 148757755 148759350 -48436082 - Lx3_Mus LINE L1 -23 6986 5335 3 1719 1376 266 115 25 chr1 148759901 148760365 -48435067 - Lx6 LINE L1 -3 7693 6937 3 1719 729 53 0 0 chr1 148760365 148760459 -48434973 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1719 1376 251 143 31 chr1 148760459 148760653 -48434779 - Lx6 LINE L1 -524 6936 6704 3 1719 3332 254 62 23 chr1 148760671 148761954 -48433478 + Lx6 LINE L1 5358 6687 -773 3 1719 24 0 0 0 chr1 148762051 148762075 -48433357 + AT_rich Low_complexity Low_complexity 1 24 0 3 1719 41 36 0 0 chr1 148762916 148762971 -48432461 + AT_rich Low_complexity Low_complexity 1 55 0 3 1719 30 27 0 0 chr1 148763116 148763153 -48432279 + AT_rich Low_complexity Low_complexity 1 37 0 3 1719 5409 252 51 29 chr1 148763226 148764446 -48430986 - Lx5 LINE L1 -1 7049 5790 3 1719 282 95 0 0 chr1 148764446 148764488 -48430944 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1719 8700 195 57 23 chr1 148764488 148765630 -48429802 - Lx5 LINE L1 -1261 5789 4624 3 1719 246 32 0 0 chr1 148765630 148765661 -48429771 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1719 8700 195 57 23 chr1 148765661 148766552 -48428880 - Lx5 LINE L1 -1254 4623 3682 3 214 13958 157 20 3 chr1 148766603 148769648 -48425784 - Lx LINE L1 -337 6317 3222 3 1720 883 145 0 0 chr1 148769648 148769779 -48425653 + B2_Mm2 SINE B2 6 136 -59 3 1720 574 301 91 100 chr1 148770000 148770058 -48425374 - RMER2 LTR ERV1 -16 551 491 3 1720 246 32 0 0 chr1 148770058 148770089 -48425343 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1720 632 273 70 73 chr1 148770089 148770506 -48424926 - RMER2 LTR ERV1 -77 490 1 3 1720 1785 210 18 20 chr1 148770833 148771406 -48424026 + L1_Mur2 LINE L1 921 1500 -4377 3 1720 1154 15 0 0 chr1 148771406 148771539 -48423893 + B1_Mm SINE Alu 1 133 -14 3 1720 441 0 0 0 chr1 148771539 148771588 -48423844 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 3 1720 1785 211 8 50 chr1 148771588 148771762 -48423670 + L1_Mur2 LINE L1 1501 1654 -4223 3 1720 2431 133 73 0 chr1 148771762 148772175 -48423257 - BGLII_A LTR ERVK 0 445 3 3 1720 1785 211 8 50 chr1 148772175 148772223 -48423209 + L1_Mur2 LINE L1 1655 1699 -4178 3 1720 2884 202 76 8 chr1 148772224 148773025 -48422407 - Lx4B LINE L1 -1050 6008 5168 3 1720 1553 199 80 58 chr1 148773030 148773549 -48421883 + BGLII_B LTR ERVK 22 435 -6 3 1720 271 333 74 33 chr1 148773581 148773702 -48421730 + BGLII_B LTR ERVK 428 553 0 3 1720 1462 158 11 11 chr1 148773702 148773964 -48421468 - L1_Mur2 LINE L1 -729 5148 4887 4 1720 3812 226 43 15 chr1 148773956 148774929 -48420503 + Lx2B LINE L1 5992 6991 -9 4 1720 3050 210 81 24 chr1 148774937 148775271 -48420161 + L1_Mur2 LINE L1 1692 2079 -3798 3 1720 465 62 0 0 chr1 148775271 148775336 -48420096 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1720 3050 210 81 24 chr1 148775336 148775708 -48419724 + L1_Mur2 LINE L1 2080 2452 -3425 3 1720 907 66 107 0 chr1 148775708 148775830 -48419602 + B1_Mus1 SINE Alu 1 135 -13 4 1720 465 19 0 0 chr1 148775831 148775885 -48419547 + (CTAAA)n Simple_repeat Simple_repeat 3 56 0 4 1720 3050 210 81 24 chr1 148775885 148776025 -48419407 + L1_Mur2 LINE L1 2453 2589 -3288 3 1720 22 0 0 0 chr1 148776354 148776376 -48419056 + AT_rich Low_complexity Low_complexity 1 22 0 4 1720 206 180 0 16 chr1 148776854 148776916 -48418516 + GA-rich Low_complexity Low_complexity 2 62 0 4 1720 489 325 25 6 chr1 148777368 148777526 -48417906 + MLT1A0 LTR MaLR 180 340 -25 4 1720 1724 221 58 30 chr1 148777560 148778023 -48417409 + RMER6C LTR ERVK 211 686 -4 4 1720 235 254 18 0 chr1 148778354 148778409 -48417023 + Lx9 LINE L1 7263 7318 -326 4 1720 5176 33 5 0 chr1 148778467 148779081 -48416351 - L1Md_F2 LINE L1 -12 6570 5954 4 1720 430 196 19 19 chr1 148779082 148779186 -48416246 + Lx9 LINE L1 7344 7447 -197 4 1720 383 119 0 15 chr1 148779192 148779260 -48416172 + (TATG)n Simple_repeat Simple_repeat 2 68 0 4 1720 40 73 0 0 chr1 148779627 148779709 -48415723 + AT_rich Low_complexity Low_complexity 1 82 0 4 1720 22 0 0 0 chr1 148779871 148779893 -48415539 + AT_rich Low_complexity Low_complexity 1 22 0 4 1720 479 17 17 0 chr1 148779932 148779992 -48415440 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1720 405 341 35 31 chr1 148780699 148780956 -48414476 - ORR1D1 LTR MaLR -88 286 29 4 1720 22 56 0 0 chr1 148781298 148781334 -48414098 + AT_rich Low_complexity Low_complexity 1 36 0 4 1720 299 276 112 52 chr1 148782105 148782239 -48413193 - Tigger15a DNA TcMar -210 505 364 4 1720 588 29 0 0 chr1 148782360 148782430 -48413002 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 4 1720 1795 77 0 0 chr1 148782840 148783075 -48412357 - L1_Mus3 LINE L1 -503 6135 5901 4 1720 3556 99 0 13 chr1 148783075 148783608 -48411824 + L1_Mus3 LINE L1 6113 6638 0 4 1720 601 284 33 28 chr1 148783932 148784146 -48411286 - B3 SINE B2 0 216 2 4 1720 351 0 0 0 chr1 148784593 148784632 -48410800 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1720 497 315 151 41 chr1 148784703 148785021 -48410411 - MTEb LTR MaLR 0 379 27 4 1720 268 331 80 8 chr1 148785614 148785739 -48409693 + ID_B1 SINE B4 91 224 0 4 1720 5213 92 18 33 chr1 148786566 148787383 -48408049 + RLTR22_Mur LTR ERVK 1 805 -1043 4 1720 5351 149 29 1 chr1 148787571 148788438 -48406994 - Lx LINE L1 -1 6653 5763 4 1720 350 129 21 31 chr1 148788795 148788891 -48406541 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 4 1720 339 321 55 9 chr1 148791300 148791410 -48404022 + ID_B1 SINE B4 11 125 -99 4 1720 35 24 0 0 chr1 148791546 148791588 -48403844 + AT_rich Low_complexity Low_complexity 1 42 0 4 1720 291 367 55 5 chr1 148791743 148791943 -48403489 + Tigger7 DNA MER2_type 2133 2342 -149 4 1720 405 0 0 0 chr1 148791964 148792009 -48403423 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1720 1696 204 219 7 chr1 148792009 148792443 -48402989 + MT2B LTR ERVL 6 531 -70 4 1720 254 236 38 201 chr1 148792566 148792725 -48402707 - MTC-int LTR MaLR -594 664 532 4 1720 6981 58 2 1 chr1 148792730 148793610 -48401822 + L1Md_F3 LINE L1 4706 5586 -297 4 1720 8267 37 1 5 chr1 148793610 148794598 -48400834 + L1Md_F3 LINE L1 5587 6570 -14 4 1720 334 392 7 0 chr1 148794645 148794793 -48400639 - MTC-int LTR MaLR -793 465 317 4 1720 629 253 17 45 chr1 148794804 148794982 -48400450 - Lx5 LINE L1 -6 7044 6872 4 1720 303 150 0 0 chr1 148795185 148795245 -48400187 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1720 316 257 52 17 chr1 148795473 148795588 -48399844 + RMER4A LTR ERVK 316 434 -32 4 1720 960 185 50 39 chr1 148795597 148795856 -48399576 + MYSERV6-int LTR ERVK 5315 5576 -974 4 1720 1001 171 16 19 chr1 148795827 148796091 -48399341 + MYSERV6-int LTR ERVK 8714 8905 -54 4 1720 230 255 0 0 chr1 148796091 148796138 -48399294 + RLTR15 LTR ERVK 1 47 -312 4 1720 828 178 67 16 chr1 148796138 148796332 -48399100 + Lx3A LINE L1 6772 6975 -6 4 1720 449 292 78 48 chr1 148796360 148796630 -48398802 + RLTR15 LTR ERVK 66 343 -16 4 1720 1534 144 87 67 chr1 148796639 148796951 -48398481 + ORR1A1 LTR MaLR 1 318 -8 4 1720 8390 179 54 66 chr1 148796955 148798049 -48397383 + ORR1A1-int LTR MaLR 1 1161 -802 4 1720 1110 89 0 0 chr1 148798049 148798195 -48397237 + B1_Mus1 SINE Alu 1 146 -2 4 1720 8390 179 54 66 chr1 148798195 148799087 -48396345 + ORR1A1-int LTR MaLR 1162 1963 0 4 1720 1572 209 12 21 chr1 148799087 148799419 -48396013 + ORR1A1 LTR MaLR 1 329 -17 4 1720 2100 256 60 9 chr1 148799426 148800008 -48395424 - Lx9 LINE L1 -456 7188 6577 4 1720 605 194 0 43 chr1 148800148 148800336 -48395096 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1720 1016 213 11 50 chr1 148800738 148801019 -48394413 - Lx7 LINE L1 -2 7694 7425 4 1720 341 235 61 12 chr1 148801029 148801111 -48394321 - Lx7 LINE L1 -986 6710 6625 4 1720 7478 66 11 8 chr1 148801497 148802487 -48392945 - L1Md_F2 LINE L1 -3 6579 5587 4 1720 21 0 0 0 chr1 148802655 148802676 -48392756 + AT_rich Low_complexity Low_complexity 1 21 0 4 1720 22 35 0 0 chr1 148803420 148803449 -48391983 + AT_rich Low_complexity Low_complexity 1 29 0 4 1720 639 233 13 46 chr1 148803562 148803715 -48391717 - B1_Mur2 SINE Alu 0 149 2 4 1720 555 292 136 35 chr1 148803794 148804081 -48391351 + LTR40b LTR ERVL 146 461 -1 4 1720 5982 168 10 11 chr1 148805050 148806200 -48389232 - L1_Mur2 LINE L1 -838 5039 3891 4 1720 910 216 63 0 chr1 148806216 148806438 -48388994 + Lx2B LINE L1 5879 6114 -886 4 1720 1745 202 46 33 chr1 148807053 148807442 -48387990 + Lx3C LINE L1 6581 6974 -2 4 1720 270 278 90 30 chr1 148808103 148808203 -48387229 + RMER15-int LTR ERVL 2119 2224 -2775 4 1720 350 356 120 25 chr1 148808296 148808570 -48386862 + Lx8 LINE L1 6196 6495 -978 4 1720 673 345 66 18 chr1 148809000 148809286 -48386146 + RMER15 LTR ERVL 275 574 -1 4 1720 36 53 0 0 chr1 148809637 148809694 -48385738 + AT_rich Low_complexity Low_complexity 1 57 0 4 1720 216 143 0 0 chr1 148809761 148809803 -48385629 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1720 2724 212 4 2 chr1 148811053 148811555 -48383877 + Lx5 LINE L1 6200 6702 -348 4 1720 367 333 107 16 chr1 148811552 148811796 -48383636 - Lx9 LINE L1 -180 7464 7199 4 1720 2774 110 17 2 chr1 148811842 148812262 -48383170 + Lx3_Mus LINE L1 6566 6991 -18 4 1720 180 0 0 0 chr1 148812262 148812282 -48383150 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 1720 369 174 0 104 chr1 148812382 148812459 -48382973 + Lx5 LINE L1 5802 5870 -1138 4 1720 271 337 33 11 chr1 148813952 148814042 -48381390 + ID_B1 SINE B4 108 199 -25 4 1720 338 271 36 45 chr1 148813987 148814099 -48381333 + MTD LTR MaLR 300 410 -9 4 1720 240 308 0 0 chr1 148814322 148814400 -48381032 + T-rich Low_complexity Low_complexity 1 78 0 4 1720 388 303 95 11 chr1 148814808 148814998 -48380434 + B3 SINE B2 2 207 -9 4 1720 1169 314 148 28 chr1 148815719 148817019 -48378413 + Lx8 LINE L1 5397 6909 -564 4 1720 216 154 39 0 chr1 148817019 148817071 -48378361 + A-rich Low_complexity Low_complexity 4 57 0 4 1720 3237 59 5 2 chr1 148817177 148817586 -48377846 + L1Md_F2 LINE L1 6142 6551 -31 4 1720 1327 39 11 27 chr1 148817586 148817770 -48377662 + L1Md_F3 LINE L1 6402 6582 -2 4 1720 183 129 0 0 chr1 148817784 148817815 -48377617 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 4 1720 499 317 73 15 chr1 148818174 148818791 -48376641 + L1MA4 LINE L1 4935 5589 -708 4 1720 426 294 38 44 chr1 148818915 148819075 -48376357 + RSINE1 SINE B4 7 165 0 4 1720 245 339 30 8 chr1 148819076 148819207 -48376225 + L1MA4 LINE L1 5791 5924 -376 4 1720 530 340 6 6 chr1 148819421 148819560 -48375872 + RSINE1 SINE B4 2 140 -25 4 1720 204 40 0 0 chr1 148819560 148819585 -48375847 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1720 530 340 6 6 chr1 148819585 148819608 -48375824 + RSINE1 SINE B4 141 164 -1 4 1720 9093 173 28 11 chr1 148820461 148822707 -48372725 + L1VL4 LINE L1 502 2786 -773 4 1720 4856 100 0 1 chr1 148822708 148823612 -48371820 - L1_Mus3 LINE L1 -497 6069 5167 4 1720 3224 136 17 2 chr1 148823612 148824143 -48371289 + L1_Mus3 LINE L1 6092 6630 -8 4 1720 4087 192 168 190 chr1 148824170 148824495 -48370937 + L1Md_F2 LINE L1 3133 3479 -2407 4 1720 183 42 0 0 chr1 148824495 148824519 -48370913 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1720 6104 138 113 127 chr1 148824519 148825631 -48369801 + L1Md_F2 LINE L1 3480 4730 -1156 4 1720 2203 85 0 22 chr1 148825631 148825944 -48369488 + ORR1A1 LTR MaLR 3 308 -38 4 1720 6104 138 113 127 chr1 148825944 148826704 -48368728 + L1Md_F2 LINE L1 4731 5588 -298 4 1720 7826 46 5 17 chr1 148826705 148827709 -48367723 + L1Md_F2 LINE L1 5588 6579 -3 4 1720 374 44 0 0 chr1 148827709 148827754 -48367678 + ORR1A1 LTR MaLR 294 338 -8 4 1720 1329 179 10 27 chr1 148827758 148828035 -48367397 + L1_Mur2 LINE L1 5024 5296 -581 4 1720 1144 82 0 0 chr1 148828035 148828182 -48367250 + B1_Mm SINE Alu 1 147 0 4 1720 1329 179 10 27 chr1 148828182 148828197 -48367235 + L1_Mur2 LINE L1 5297 5311 -566 4 1720 948 168 0 0 chr1 148828204 148828377 -48367055 + GA-rich Low_complexity Low_complexity 2 174 0 4 1720 6910 137 58 19 chr1 148828377 148829482 -48365950 + Lx3B LINE L1 5291 6391 -582 4 1720 423 0 0 0 chr1 148829482 148829529 -48365903 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1720 6910 142 111 19 chr1 148829529 148829980 -48365452 + Lx3B LINE L1 6392 6967 -6 4 1720 252 59 0 0 chr1 148829984 148830018 -48365414 + (TAA)n Simple_repeat Simple_repeat 1 34 0 4 1720 3500 154 35 3 chr1 148830022 148830626 -48364806 + Lx2B LINE L1 6374 6996 -4 4 1720 42 36 0 0 chr1 148831348 148831404 -48364028 + AT_rich Low_complexity Low_complexity 1 56 0 4 1720 23 54 0 0 chr1 148831694 148831731 -48363701 + AT_rich Low_complexity Low_complexity 1 37 0 4 1720 183 283 31 62 chr1 148831738 148831802 -48363630 - L3 LINE CR1 -2275 2214 2153 4 1720 642 257 122 19 chr1 148831935 148832149 -48363283 - Lx8 LINE L1 -820 6653 6418 4 1720 405 256 74 41 chr1 148832162 148832284 -48363148 - Lx8 LINE L1 -1105 6368 6243 4 1720 806 245 30 20 chr1 148834849 148835049 -48360383 - B3 SINE B2 0 216 15 4 1720 267 370 53 53 chr1 148835127 148835427 -48360005 + Lx8 LINE L1 7163 7462 -11 4 1720 756 126 23 11 chr1 148835570 148835746 -48359686 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1720 21 36 0 0 chr1 148836215 148836243 -48359189 + AT_rich Low_complexity Low_complexity 1 28 0 4 1720 380 212 12 0 chr1 148836330 148836410 -48359022 + MT2A LTR ERVL 1 81 -452 4 1720 3786 48 15 0 chr1 148836410 148836884 -48358548 - L1Md_F2 LINE L1 -1 6581 6101 4 1720 1657 193 37 58 chr1 148837221 148837600 -48357832 + ORR1C1 LTR MaLR 8 378 0 4 1720 3156 34 39 0 chr1 148838354 148838735 -48356697 - MTA_Mm LTR MaLR 0 396 1 4 1720 320 362 47 72 chr1 148839671 148839948 -48355484 - LTR48 LTR ERV1 -6 781 512 4 1720 234 174 0 0 chr1 148840228 148840274 -48355158 + (TAA)n Simple_repeat Simple_repeat 2 47 0 5 1720 25 31 0 0 chr1 148840353 148840385 -48355047 + AT_rich Low_complexity Low_complexity 1 32 0 5 1720 225 220 20 0 chr1 148840711 148840761 -48354671 + CT-rich Low_complexity Low_complexity 2 52 0 5 1720 1451 160 0 0 chr1 148840917 148841161 -48354271 - Lx LINE L1 -1321 4562 4319 5 1720 6734 179 4 13 chr1 148841157 148841739 -48353693 + Lx LINE L1 4610 5189 -694 5 1720 1999 98 12 54 chr1 148841739 148842075 -48353357 - RLTRETN_Mm LTR ERVK 0 322 1 5 1720 6734 150 54 10 chr1 148842075 148843473 -48351959 + Lx LINE L1 5190 6646 -8 5 1720 3989 159 57 22 chr1 148843724 148844496 -48350936 - Lx2B LINE L1 -17 6983 6185 5 1720 918 151 0 0 chr1 148845204 148845343 -48350089 + B1_Mus1 SINE Alu 1 139 -9 5 1720 204 97 0 0 chr1 148845366 148845397 -48350035 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1720 348 24 0 0 chr1 148846486 148846527 -48348905 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1720 410 356 0 0 chr1 148846731 148846849 -48348583 - Lx8 LINE L1 -181 7292 7175 5 1720 2349 174 26 78 chr1 148846900 148847474 -48347958 - RMER6C LTR ERVK 0 690 147 5 1720 488 322 82 30 chr1 148847479 148847748 -48347684 - Lx7 LINE L1 -666 7030 6748 5 1720 363 297 61 49 chr1 148848169 148848332 -48347100 + ORR1E LTR MaLR 29 193 -166 5 1720 730 271 3 43 chr1 148848365 148848545 -48346887 - RMER17C LTR ERVK -16 394 220 5 1720 533 42 14 0 chr1 148848545 148848617 -48346815 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1720 730 262 2 64 chr1 148848617 148848771 -48346661 - RMER17C LTR ERVK -157 253 84 5 1720 1056 16 0 0 chr1 148848771 148848893 -48346539 + (GAGAA)n Simple_repeat Simple_repeat 3 124 0 5 1720 573 249 0 93 chr1 148848893 148849107 -48346325 - RMER17C LTR ERVK -219 191 2 5 1720 1777 172 23 20 chr1 148849107 148849451 -48345981 - RMER17C-int LTR ERVK 0 3238 2894 5 1720 793 108 126 28 chr1 148849450 148849593 -48345839 - RMER17C-int LTR ERVK -550 2688 2532 5 1720 814 184 62 0 chr1 148849581 148849760 -48345672 - RMER17C-int LTR ERVK -879 2359 2170 5 1720 1094 243 183 47 chr1 148849757 148849982 -48345450 - RMER17C-int LTR ERVK -1219 2019 1786 5 1720 2655 37 61 6 chr1 148849982 148850310 -48345122 + ORR1A1 LTR MaLR 1 346 0 5 1720 1094 243 183 47 chr1 148850310 148850555 -48344877 - RMER17C-int LTR ERVK -1453 1785 1485 5 1720 1115 88 0 0 chr1 148850704 148850851 -48344581 + B1_Mus2 SINE Alu 1 147 0 5 1720 678 179 3 131 chr1 148851246 148851536 -48343896 - RMER17C LTR ERVK -157 253 1 5 1720 237 143 11 35 chr1 148852186 148852273 -48343159 + T-rich Low_complexity Low_complexity 4 88 0 5 1720 1042 89 0 27 chr1 148852274 148852424 -48343008 - B1_Mus2 SINE Alu -1 146 1 5 1720 1212 128 70 40 chr1 148852452 148852679 -48342753 - L1Md_F2 LINE L1 0 6582 6349 5 1720 270 286 103 0 chr1 148852707 148852833 -48342599 + L1M1 LINE L1 5729 5867 -436 5 1720 2092 243 89 13 chr1 148853174 148853862 -48341570 - Lx9 LINE L1 0 7644 6905 5 1720 7694 100 3 2 chr1 148853871 148855640 -48339792 - L1_Mus3 LINE L1 -6 6632 4863 5 1720 1006 94 0 0 chr1 148855642 148855780 -48339652 + B1_Mus1 SINE Alu 11 148 0 5 1720 486 0 0 0 chr1 148856224 148856278 -48339154 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1720 27 0 0 0 chr1 148856375 148856402 -48339030 + AT_rich Low_complexity Low_complexity 1 27 0 5 1720 180 0 0 0 chr1 148856552 148856572 -48338860 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1720 353 341 27 68 chr1 148857494 148857642 -48337790 + RSINE1 SINE B4 3 144 -21 5 1720 3636 114 16 23 chr1 148857736 148858308 -48337124 + Lx3A LINE L1 6287 6854 -127 5 1720 686 222 79 79 chr1 148858370 148858647 -48336785 - MT2C_Mm LTR ERVL -17 476 207 5 1720 4668 103 17 5 chr1 148858647 148859400 -48336032 - L1_Mur1 LINE L1 -2108 3778 3017 5 1720 534 164 28 19 chr1 148859492 148859598 -48335834 - MT2C_Mm LTR ERVL -426 107 1 5 1720 3417 289 63 17 chr1 148861936 148862096 -48333336 - Lx6 LINE L1 -5 7455 7257 5 1720 830 68 0 8 chr1 148862096 148862215 -48333217 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 5 1720 3417 289 63 17 chr1 148862215 148863175 -48332257 - Lx6 LINE L1 -204 7256 6284 5 1720 379 298 75 17 chr1 148863199 148863373 -48332059 + Lx6 LINE L1 104 287 -7441 5 1720 2437 281 24 39 chr1 148863371 148864157 -48331275 + Lx6 LINE L1 5953 6726 -734 5 1720 810 64 0 0 chr1 148864157 148864266 -48331166 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 1720 369 0 0 0 chr1 148864272 148864313 -48331119 + (ATG)n Simple_repeat Simple_repeat 3 43 0 5 1720 1868 254 109 24 chr1 148864323 148864903 -48330529 + Lx6 LINE L1 6832 7460 0 5 1720 495 0 0 0 chr1 148864905 148864960 -48330472 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1720 957 251 89 48 chr1 148864967 148865428 -48330004 + L1MA6 LINE L1 5460 5939 -361 5 1720 249 348 44 25 chr1 148866425 148866584 -48328848 + ID_B1 SINE B4 4 165 -59 5 1720 225 0 0 0 chr1 148867366 148867391 -48328041 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1720 29 28 0 0 chr1 148867687 148867723 -48327709 + AT_rich Low_complexity Low_complexity 1 36 0 5 1720 24 53 0 0 chr1 148868341 148868379 -48327053 + AT_rich Low_complexity Low_complexity 1 38 0 5 1720 21 71 0 0 chr1 148868681 148868723 -48326709 + AT_rich Low_complexity Low_complexity 1 42 0 5 1720 395 92 0 15 chr1 148869084 148869150 -48326282 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1720 23 0 0 0 chr1 148871513 148871536 -48323896 + AT_rich Low_complexity Low_complexity 1 23 0 5 1720 231 132 0 0 chr1 148871626 148871664 -48323768 + Lx7 LINE L1 6956 6993 -703 5 1720 551 240 32 0 chr1 148871661 148871786 -48323646 + Lx7 LINE L1 6717 6845 -851 5 1720 2411 181 154 17 chr1 148871788 148872321 -48323111 + Lx2 LINE L1 6384 6989 -8 5 1720 1029 90 12 18 chr1 148872321 148872490 -48322942 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 5 1720 428 265 17 17 chr1 148872493 148872612 -48322820 + Lx7 LINE L1 7161 7279 -417 5 1720 886 75 0 0 chr1 148872659 148872779 -48322653 - B1_Mus1 SINE Alu 0 148 29 5 1720 377 171 24 24 chr1 148872780 148872864 -48322568 + Lx7 LINE L1 7384 7467 -229 5 1720 2108 189 10 10 chr1 148872866 148873252 -48322180 - ORR1B1 LTR MaLR -8 386 1 5 1720 621 256 29 50 chr1 148873268 148873510 -48321922 + Lx7 LINE L1 7460 7696 0 5 1720 388 302 113 73 chr1 148875661 148875936 -48319496 + RMER20B LTR ERVK 130 415 -101 5 1720 1239 283 26 16 chr1 148877265 148877577 -48317855 - ORR1D1 LTR MaLR 0 374 60 5 1720 210 326 35 64 chr1 148877594 148877735 -48317697 + B4 SINE B4 5 141 -151 5 1720 1201 41 0 14 chr1 148878912 148879059 -48316373 - B1_Mus1 SINE Alu 0 148 4 5 1720 350 297 63 25 chr1 148879319 148879478 -48315954 - Lx6 LINE L1 -8 7452 7288 5 1720 396 0 0 0 chr1 148879619 148879663 -48315769 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1720 652 214 83 0 chr1 148879667 148879835 -48315597 + Lx7 LINE L1 3532 3713 -2167 5 1720 1399 255 14 30 chr1 148879812 148880241 -48315191 + Lx7 LINE L1 3943 4364 -1516 5 1720 447 145 0 0 chr1 148880241 148880324 -48315108 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1720 286 290 0 0 chr1 148880324 148880417 -48315015 + Lx7 LINE L1 4786 4878 -1002 5 1720 1933 212 7 34 chr1 148880417 148880831 -48314601 - MTC LTR MaLR -18 403 1 5 1720 4800 242 67 13 chr1 148880835 148882895 -48312537 + Lx7 LINE L1 4866 7020 -676 5 1720 1418 265 58 166 chr1 148882891 148883242 -48312190 - Lx7 LINE L1 -197 7499 7219 5 1720 369 0 0 0 chr1 148883242 148883283 -48312149 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1720 1418 265 58 166 chr1 148883283 148883709 -48311723 - Lx7 LINE L1 -478 7218 6806 5 1720 299 219 156 0 chr1 148883709 148883773 -48311659 + 5S rRNA rRNA 17 90 -31 5 1720 255 242 16 31 chr1 148883906 148883970 -48311462 + MT2B2 LTR ERVL 152 214 -370 5 1720 988 72 0 0 chr1 148884281 148884420 -48311012 + B1_Mus2 SINE Alu 9 147 0 5 1720 342 374 44 37 chr1 148884538 148884674 -48310758 - RSINE1 SINE B4 -21 144 8 5 1720 8909 53 0 0 chr1 148884674 148885780 -48309652 + L1_Mm LINE L1 4537 5642 -241 5 1720 3633 212 202 45 chr1 148885837 148887095 -48308337 + Lx5 LINE L1 4326 6005 -1045 5 1720 288 0 0 0 chr1 148887095 148887127 -48308305 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1720 3633 224 31 60 chr1 148887127 148887661 -48307771 + Lx5 LINE L1 6006 6504 -546 5 1720 7591 36 0 1 chr1 148887660 148888567 -48306865 - L1Md_T LINE L1 0 6582 5677 5 1720 10103 17 0 0 chr1 148888567 148889732 -48305700 + L1Md_T LINE L1 4422 5586 -297 5 1720 9011 3 0 0 chr1 148889732 148890728 -48304704 + L1Md_A LINE L1 5587 6582 0 5 1720 4658 9 0 0 chr1 148890728 148891256 -48304176 + L1Md_A LINE L1 5059 5586 -297 5 1720 9020 3 0 0 chr1 148891256 148892252 -48303180 + L1Md_A LINE L1 5587 6582 0 5 1720 5424 120 27 7 chr1 148892252 148893413 -48302019 + Lx5 LINE L1 5059 7050 0 5 1720 268 252 8 8 chr1 148893457 148893581 -48301851 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 1720 25 0 0 0 chr1 148893888 148893913 -48301519 + AT_rich Low_complexity Low_complexity 1 25 0 5 1720 256 304 43 0 chr1 148895433 148895502 -48299930 + L1MC4 LINE L1 6824 6895 -1147 5 1720 25 51 0 0 chr1 148895758 148895797 -48299635 + AT_rich Low_complexity Low_complexity 1 39 0 5 1720 638 132 7 0 chr1 148897062 148897198 -48298234 + (TC)n Simple_repeat Simple_repeat 2 138 0 5 1720 360 0 0 0 chr1 148897198 148897238 -48298194 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1721 25 0 0 0 chr1 148898202 148898227 -48297205 + AT_rich Low_complexity Low_complexity 1 25 0 5 1721 452 137 0 10 chr1 148898993 148899096 -48296336 + (CA)n Simple_repeat Simple_repeat 2 103 0 5 1721 510 17 0 0 chr1 148899109 148899168 -48296264 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1721 41 87 0 0 chr1 148899260 148899364 -48296068 + AT_rich Low_complexity Low_complexity 1 104 0 5 1721 977 158 158 0 chr1 148899940 148900124 -48295308 - URR1A DNA MER1_type -10 216 4 5 1721 276 401 77 3 chr1 148900511 148900821 -48294611 - L2 LINE L2 -1106 2313 1981 5 1721 586 294 19 0 chr1 148901201 148901361 -48294071 + B2_Mm2 SINE B2 2 164 -31 5 1721 250 356 59 0 chr1 148901754 148901889 -48293543 - MIR SINE MIR -61 201 59 5 1721 420 111 0 0 chr1 148902281 148902344 -48293088 + (TAAG)n Simple_repeat Simple_repeat 1 63 0 5 1721 539 214 36 64 chr1 148902449 148902589 -48292843 - B1_Mus1 SINE Alu -8 140 5 5 1721 2571 281 60 13 chr1 148903176 148904251 -48291181 + Lx7 LINE L1 6181 7341 -355 5 1721 215 103 26 0 chr1 148904257 148904296 -48291136 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 5 1721 1326 216 125 44 chr1 148904305 148904712 -48290720 - RMER10A LTR ERVL -2 440 1 5 1721 1078 81 0 0 chr1 148904735 148904871 -48290561 + B1_Mm SINE Alu 2 137 -10 5 1721 25 0 0 0 chr1 148904886 148904911 -48290521 + AT_rich Low_complexity Low_complexity 1 25 0 5 1721 478 210 110 158 chr1 148904923 148905297 -48290135 + Lx7 LINE L1 7341 7696 0 5 1721 919 184 70 54 chr1 148905517 148905914 -48289518 - RMER6B LTR ERVK 0 461 1 5 1721 682 177 0 104 chr1 148906010 148906193 -48289239 + Lx4A LINE L1 6895 7058 0 5 1721 21 0 0 0 chr1 148906273 148906294 -48289138 + AT_rich Low_complexity Low_complexity 1 21 0 5 1721 3028 38 3 5 chr1 148906822 148907197 -48288235 + L1Md_F2 LINE L1 6209 6582 0 5 1721 22 0 0 0 chr1 148907208 148907230 -48288202 + AT_rich Low_complexity Low_complexity 1 22 0 5 1721 280 372 17 42 chr1 148907972 148908090 -48287342 + RSINE1 SINE B4 28 142 -23 6 1721 215 133 0 22 chr1 148908550 148908596 -48286836 + CT-rich Low_complexity Low_complexity 1 45 0 6 1721 665 24 12 0 chr1 148908738 148908821 -48286611 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 6 1721 3608 204 24 24 chr1 148908854 148908965 -48286467 - Lx4A LINE L1 -2 7056 6945 6 1721 483 33 0 0 chr1 148908965 148909026 -48286406 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1721 3608 204 24 24 chr1 148909026 148909447 -48285985 - Lx4A LINE L1 -114 6944 6529 6 1721 2878 61 199 12 chr1 148909447 148909878 -48285554 + RLTR1B LTR ERV1 1 512 0 6 1721 3608 243 60 37 chr1 148909878 148910353 -48285079 - Lx4A LINE L1 -530 6528 5996 6 1721 4082 140 16 31 chr1 148910358 148910991 -48284441 + Lx4A LINE L1 5037 5659 -218 6 1721 5481 99 14 11 chr1 148910991 148911795 -48283637 + RLTR13D1 LTR ERVK 1 806 0 6 1721 4082 140 16 31 chr1 148911795 148911892 -48283540 + Lx4A LINE L1 5660 5756 -121 6 1721 6967 106 6 19 chr1 148911880 148912924 -48282508 + Lx LINE L1 5613 6642 -12 6 1721 1248 139 28 0 chr1 148912927 148913142 -48282290 + Lx4A LINE L1 5747 5967 -1091 6 1721 424 359 14 116 chr1 148913181 148913214 -48282218 - B4 SINE B4 -42 250 220 6 1721 823 51 17 0 chr1 148913214 148913331 -48282101 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 6 1721 505 356 8 111 chr1 148913331 148913574 -48281858 - B4A SINE B4 -73 219 2 6 1721 22 35 0 0 chr1 148915170 148915199 -48280233 + AT_rich Low_complexity Low_complexity 1 29 0 6 1721 314 339 15 23 chr1 148915487 148915617 -48279815 + MLT1A1 LTR MaLR 1 129 -279 6 1721 433 291 124 4 chr1 148916302 148916536 -48278896 - L1M2 LINE L1 -536 5637 5379 6 1721 1436 281 46 13 chr1 148918438 148918831 -48276601 - MTD LTR MaLR -8 411 6 6 1721 1758 219 127 7 chr1 148918835 148919178 -48276254 + RMER6D LTR ERVK 1 361 -359 6 1721 609 14 0 0 chr1 148919178 148919248 -48276184 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1721 1758 219 127 7 chr1 148919248 148919333 -48276099 + RMER6D LTR ERVK 362 480 -240 6 1721 585 184 46 0 chr1 148919333 148919442 -48275990 - RLTR19C LTR ERVK -2 504 391 6 1721 348 24 0 0 chr1 148919444 148919485 -48275947 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 6 1721 2329 137 2 87 chr1 148919485 148919924 -48275508 - RLTR19C LTR ERVK -104 402 1 6 1721 1301 175 17 8 chr1 148919924 148920137 -48275295 + RMER6D LTR ERVK 474 688 -2 6 1721 2910 178 99 10 chr1 148920139 148920742 -48274690 + RMER6-int LTR ERVK 1 657 -2520 6 1721 714 226 85 0 chr1 148920814 148920978 -48274454 - RMER6C LTR ERVK 0 690 513 6 1721 247 362 8 108 chr1 148920986 148921116 -48274316 + B2_Mm2 SINE B2 9 125 -70 6 1721 1624 284 25 4 chr1 148921251 148921728 -48273704 + RLTR16 LTR ERVK 1 487 -18 6 1721 329 241 18 18 chr1 148923239 148923349 -48272083 + GA-rich Low_complexity Low_complexity 2 111 0 6 1721 312 366 150 0 chr1 148923787 148924014 -48271418 + RMER15 LTR ERVL 300 560 -15 6 1721 693 344 63 22 chr1 148924374 148924389 -48271043 + Lx8 LINE L1 6488 6502 -1142 6 1721 2025 177 12 69 chr1 148924389 148924807 -48270625 + ORR1B1 LTR MaLR 1 394 0 6 1721 2414 309 54 24 chr1 148924807 148925750 -48269682 + Lx8 LINE L1 6444 7340 -133 6 1721 503 343 70 27 chr1 148928031 148928157 -48267275 - L1MA7 LINE L1 -369 5922 5794 6 1721 252 0 0 0 chr1 148928157 148928185 -48267247 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1721 276 30 0 0 chr1 148928185 148928217 -48267215 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1721 503 343 70 27 chr1 148928217 148928530 -48266902 - L1MA7 LINE L1 -498 5793 5464 6 1721 24 0 0 0 chr1 148929516 148929540 -48265892 + AT_rich Low_complexity Low_complexity 1 24 0 6 1721 218 309 121 29 chr1 148929936 148930076 -48265356 + MER5A DNA MER1_type 26 178 -11 6 1721 234 270 30 60 chr1 148930129 148930196 -48265236 + ID_B1 SINE B4 71 135 -89 6 1721 272 51 33 33 chr1 148930349 148930410 -48265022 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 6 1721 21 57 0 0 chr1 148930888 148930923 -48264509 + AT_rich Low_complexity Low_complexity 1 35 0 6 1721 515 209 82 33 chr1 148930926 148931109 -48264323 - Lx9 LINE L1 -24 7620 7429 6 1721 213 65 0 0 chr1 148931150 148931181 -48264251 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 6 1721 297 273 49 83 chr1 148931331 148931475 -48263957 + MER5A DNA MER1_type 51 189 0 6 1721 234 0 0 0 chr1 148931943 148931969 -48263463 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1721 417 286 81 71 chr1 148933386 148933597 -48261835 + B3 SINE B2 1 213 -3 6 1721 4187 212 15 6 chr1 148933629 148934495 -48260937 - Lx5 LINE L1 -1 7049 6176 6 1721 1654 233 37 17 chr1 148934638 148935040 -48260392 - MTD LTR MaLR 0 419 10 6 1721 22 0 0 0 chr1 148935338 148935360 -48260072 + AT_rich Low_complexity Low_complexity 1 22 0 6 1721 4423 250 71 17 chr1 148936747 148938008 -48257424 - Lx7 LINE L1 -50 7646 6319 6 1721 306 114 28 14 chr1 148938527 148938598 -48256834 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1721 603 227 264 0 chr1 148939084 148939247 -48256185 - B3 SINE B2 -10 206 1 6 1721 25 0 0 0 chr1 148939260 148939285 -48256147 + AT_rich Low_complexity Low_complexity 1 25 0 6 1721 189 147 0 0 chr1 148940195 148940229 -48255203 + (TAA)n Simple_repeat Simple_repeat 1 34 0 6 1721 738 75 0 0 chr1 148940243 148940349 -48255083 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1721 242 253 77 39 chr1 148940391 148940469 -48254963 + Charlie2a DNA MER1_type 142 222 -2639 6 1721 1040 312 77 31 chr1 148940568 148941048 -48254384 + MER119 DNA MER1_type 15 516 -67 6 1721 284 223 106 0 chr1 148941180 148941274 -48254158 - L1M2 LINE L1 -1503 4640 4537 6 1721 251 299 86 43 chr1 148941281 148941582 -48253850 + L1MA10 LINE L1 6019 6332 -2 6 1721 429 327 28 20 chr1 148942352 148942605 -48252827 - L1M2 LINE L1 -1228 4915 4661 6 1721 3344 59 0 7 chr1 148942644 148943069 -48252363 - L1_Mus1 LINE L1 -1 6566 6145 6 1721 316 275 48 21 chr1 148943240 148943385 -48252047 + L1MA6 LINE L1 4934 5082 -1061 6 1721 381 322 70 5 chr1 148943630 148943830 -48251602 + L1MA6 LINE L1 5384 5596 -704 6 1721 4091 143 6 19 chr1 148943833 148944519 -48250913 + Lx3A LINE L1 6298 6974 -7 6 1721 4124 204 77 7 chr1 148944562 148945369 -48250063 - Lx2A1 LINE L1 -7 7001 6135 6 1721 433 47 31 0 chr1 148945369 148945433 -48249999 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1721 4124 204 77 7 chr1 148945433 148945459 -48249973 - Lx2A1 LINE L1 -874 6134 6110 6 1721 345 295 30 65 chr1 148945454 148945798 -48249634 + L1MA6 LINE L1 5628 5955 -348 6 1721 23 54 0 0 chr1 148945891 148945928 -48249504 + AT_rich Low_complexity Low_complexity 1 37 0 6 1721 217 128 21 21 chr1 148945928 148945976 -48249456 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1721 640 229 62 17 chr1 148946001 148946179 -48249253 - Lx6 LINE L1 -843 6617 6432 6 1721 22 0 0 0 chr1 148946647 148946669 -48248763 + AT_rich Low_complexity Low_complexity 1 22 0 6 1721 30 27 0 0 chr1 148949836 148949873 -48245559 + AT_rich Low_complexity Low_complexity 1 37 0 6 1721 480 239 280 6 chr1 148950776 148950944 -48244488 + B3 SINE B2 1 214 -2 6 1721 701 230 56 19 chr1 148950965 148951285 -48244147 + Lx6 LINE L1 5714 6087 -1609 6 1721 198 118 0 0 chr1 148952148 148952182 -48243250 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1721 1170 48 0 26 chr1 148952185 148952336 -48243096 - B1_Mus1 SINE Alu 0 148 2 6 1721 856 135 45 0 chr1 148953295 148953428 -48242004 - Lx2 LINE L1 -437 6560 6422 6 1721 2069 173 13 52 chr1 148953438 148953902 -48241530 + Lx2 LINE L1 6552 6997 0 6 1721 21 36 0 0 chr1 148953904 148953932 -48241500 + AT_rich Low_complexity Low_complexity 1 28 0 6 1721 536 309 7 7 chr1 148954282 148954432 -48241000 - ERVL-E-int LTR ERVL -720 4947 4798 6 1721 22 0 0 0 chr1 148955944 148955966 -48239466 + AT_rich Low_complexity Low_complexity 1 22 0 6 1721 26 30 0 0 chr1 148955999 148956032 -48239400 + AT_rich Low_complexity Low_complexity 1 33 0 6 1721 7000 104 23 14 chr1 148956125 148957157 -48238275 - Lx LINE L1 -9 6645 5604 6 1721 22214 65 6 3 chr1 148957393 148961086 -48234346 - L1Md_F2 LINE L1 0 6582 2878 6 1721 24 32 0 0 chr1 148961687 148961718 -48233714 + AT_rich Low_complexity Low_complexity 1 31 0 6 1721 311 328 171 11 chr1 148961763 148961939 -48233493 - Lx9 LINE L1 -776 6868 6665 6 1721 260 278 33 22 chr1 148961938 148962030 -48233402 - Lx9 LINE L1 -904 6740 6648 6 1721 27 0 0 0 chr1 148962134 148962161 -48233271 + AT_rich Low_complexity Low_complexity 1 27 0 6 1721 369 336 296 27 chr1 148962756 148963101 -48232331 + MER74A LTR ERVL 65 581 -41 6 1721 304 300 17 0 chr1 148964052 148964172 -48231260 - L1M4 LINE L1 -694 5480 5359 6 1721 248 311 0 24 chr1 148964667 148964792 -48230640 - Lx2B LINE L1 0 7000 6879 6 1721 334 256 13 0 chr1 148964990 148965068 -48230364 + MER76 LTR ERVL 1 79 -612 6 1721 196 111 44 0 chr1 148965408 148965453 -48229979 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1721 333 0 0 0 chr1 148965985 148966022 -48229410 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1721 328 318 45 28 chr1 148966035 148966213 -48229219 - L1MA5A LINE L1 -370 5927 5747 6 1721 635 297 90 35 chr1 148966214 148966680 -48228752 + L1_Mur3 LINE L1 5114 5591 -289 6 1721 423 0 0 0 chr1 148966695 148966742 -48228690 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1721 216 86 0 0 chr1 148967167 148967202 -48228230 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1721 932 252 54 0 chr1 148967571 148967829 -48227603 + Lx9 LINE L1 7186 7457 -187 6 1721 336 148 0 0 chr1 148967872 148967933 -48227499 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1721 339 292 90 0 chr1 148968503 148968607 -48226825 - B1_Mm SINE Alu -37 112 1 6 1721 1672 221 100 47 chr1 148969039 148969510 -48225922 + RLTR20B3 LTR ERVK 21 516 -61 6 1721 513 32 0 0 chr1 148970095 148970158 -48225274 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1721 1148 99 12 0 chr1 148970725 148970887 -48224545 + B2_Mm2 SINE B2 1 164 -31 6 1721 314 45 0 22 chr1 148970887 148970932 -48224500 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 1721 2915 73 164 0 chr1 148971655 148972082 -48223350 - L1_Mus3 LINE L1 -1 6637 6141 6 1721 432 0 0 0 chr1 148972686 148972734 -48222698 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1721 344 284 189 67 chr1 148972742 148973070 -48222362 + RLTR9A LTR ERVK 1 368 0 6 1721 236 53 26 0 chr1 148973511 148973549 -48221883 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 6 1721 234 0 0 0 chr1 148973747 148973773 -48221659 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1721 1203 298 90 59 chr1 148974674 148975389 -48220043 + MTC-int LTR MaLR 415 1254 -4 7 1721 321 26 0 0 chr1 148975991 148976029 -48219403 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1721 491 306 108 45 chr1 148976085 148976548 -48218884 + L1MA6 LINE L1 5602 6093 -207 7 1721 180 0 0 0 chr1 148977317 148977337 -48218095 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1721 308 211 56 0 chr1 148978796 148978886 -48216546 + (TATATG)n Simple_repeat Simple_repeat 6 100 0 7 1721 466 153 70 20 chr1 148979150 148979250 -48216182 - L1_Mur2 LINE L1 -1312 4565 4461 7 1721 22 0 0 0 chr1 148980164 148980186 -48215246 + AT_rich Low_complexity Low_complexity 1 22 0 7 1721 181 288 55 0 chr1 148981472 148981545 -48213887 + MIRc SINE MIR 154 230 -38 7 1721 4194 166 65 12 chr1 148982359 148982659 -48212773 - Lx2 LINE L1 -553 6444 6097 7 1721 1595 233 85 66 chr1 148982659 148983202 -48212230 + RLTR31_Mur LTR ERVK 1 553 0 7 1721 4911 179 48 12 chr1 148983202 148984382 -48211050 - Lx2 LINE L1 -901 6096 4901 7 1721 210 105 0 0 chr1 148986119 148986157 -48209275 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1721 573 271 44 29 chr1 148986277 148986542 -48208890 + L1M1 LINE L1 5317 5585 -715 7 1721 431 303 235 17 chr1 148986558 148986852 -48208580 + MTEb LTR MaLR 20 377 -2 7 1721 307 227 30 0 chr1 148988408 148988474 -48206958 + Lx8 LINE L1 7046 7113 -360 7 1721 597 344 8 8 chr1 148988649 148988895 -48206537 + RMER15 LTR ERVL 286 531 -44 7 1721 369 0 0 0 chr1 148988896 148988937 -48206495 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1721 387 0 0 0 chr1 148988937 148988979 -48206453 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1721 278 326 10 30 chr1 148989024 148989125 -48206307 + Lx8 LINE L1 7190 7288 -185 7 1721 321 364 30 30 chr1 148989583 148989818 -48205614 - MIR SINE MIR -25 237 3 7 1721 443 314 31 31 chr1 148992589 148992750 -48202682 + RSINE1 SINE B4 5 165 0 7 1721 691 302 46 10 chr1 148992825 148993019 -48202413 - B3 SINE B2 -14 202 2 7 1721 314 308 110 82 chr1 148993090 148993507 -48201925 + HERV16-int LTR ERVL 1906 2334 -2662 7 1721 832 80 8 0 chr1 148993562 148993687 -48201745 + L1_Mus2 LINE L1 6435 6560 -6 7 1721 29 84 0 0 chr1 148993979 148994050 -48201382 + AT_rich Low_complexity Low_complexity 1 71 0 7 1721 569 252 23 127 chr1 148994714 148994887 -48200545 - B3 SINE B2 -7 209 55 7 1721 2613 189 103 13 chr1 148994983 148995616 -48199816 + RMER6C LTR ERVK 1 690 0 7 1721 21 82 0 0 chr1 148996399 148996448 -48198984 + AT_rich Low_complexity Low_complexity 1 49 0 7 1721 208 239 0 0 chr1 148996615 148996661 -48198771 + CT-rich Low_complexity Low_complexity 3 48 0 7 1721 3495 151 30 58 chr1 148996752 148997718 -48197714 + L1VL2 LINE L1 283 1215 -2400 7 1721 4172 165 3 12 chr1 148997713 148998472 -48196960 + L1_Mur2 LINE L1 3530 4281 -1596 7 1721 1312 182 3 144 chr1 148998471 148998825 -48196607 + L1_Mm LINE L1 4548 4851 -1032 7 1721 898 80 8 0 chr1 148998825 148998950 -48196482 + B1_Mus1 SINE Alu 23 148 0 7 1721 2078 239 37 88 chr1 148999136 148999981 -48195451 + L1_Mur2 LINE L1 2288 3089 -2788 7 1721 12333 174 30 45 chr1 149000001 149003020 -48192412 + L1_Mus3 LINE L1 3085 6057 -581 1 1721 787 98 129 27 chr1 149003019 149003166 -48192266 - L1_Mm LINE L1 -396 5487 5326 2 1721 3900 112 12 3 chr1 149003175 149003746 -48191686 + L1_Mus3 LINE L1 6063 6638 0 1 1721 305 287 39 62 chr1 149003821 149004081 -48191351 + L1MB8 LINE L1 5904 6157 -21 3 1721 1596 226 14 3 chr1 149005051 149005406 -48190026 - RLTR15 LTR ERVK 0 359 1 4 1721 33353 86 9 6 chr1 149005917 149011867 -48183565 - L1Md_F2 LINE L1 -1 6581 611 5 1721 1857 131 20 15 chr1 149011870 149012243 -48183189 - RLTR13B1 LTR ERVK 0 893 623 6 1721 35881 99 26 23 chr1 149012257 149014020 -48181412 - ETnERV3-int LTR ERVK -28 5780 4016 6 1721 324 0 0 0 chr1 149014020 149014056 -48181376 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 1721 35881 105 26 22 chr1 149014056 149017968 -48177464 - ETnERV3-int LTR ERVK -1793 4015 188 6 1721 1029 129 33 11 chr1 149018145 149018325 -48177107 - ETnERV3-int LTR ERVK -5622 186 3 6 1721 5648 86 18 97 chr1 149018327 149019283 -48176149 - RLTR13B1 LTR ERVK 0 893 14 6 1721 2681 158 2 7 chr1 149019285 149019737 -48175695 - L1Md_F LINE L1 -6004 515 66 8 1721 821 241 143 33 chr1 149021247 149021492 -48173940 - ORR1B2 LTR MaLR -95 272 1 9 1721 331 256 26 62 chr1 149021708 149021900 -48173532 - Lx9 LINE L1 -27 7617 7433 1 1721 1751 136 35 19 chr1 149022956 149023270 -48172162 - Lx2 LINE L1 -1 6996 6678 1 1721 1091 96 7 0 chr1 149023388 149023534 -48171898 - B1_Mus2 SINE Alu 0 147 1 1 1721 279 318 44 111 chr1 149023587 149023813 -48171619 - MLT1-int LTR MaLR -1138 233 23 1 1721 333 0 0 0 chr1 149023867 149023904 -48171528 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1721 1817 101 70 22 chr1 149024043 149024371 -48171061 - IAPEY_LTR LTR ERVK 0 385 53 1 1721 459 343 6 22 chr1 149024401 149024583 -48170849 - B3A SINE B2 -15 183 5 1 1721 3158 60 80 5 chr1 149024896 149025333 -48170099 - L1_Mus2 LINE L1 -1 6565 6096 1 1721 23 0 0 0 chr1 149025900 149025923 -48169509 + AT_rich Low_complexity Low_complexity 1 23 0 1 1721 357 271 109 65 chr1 149026511 149026740 -48168692 + RLTR15 LTR ERVK 33 271 -88 1 1721 820 251 8 0 chr1 149026898 149027105 -48168327 + Lx5 LINE L1 6508 6890 -570 2 215 9892 164 62 1 chr1 149027183 149029007 -48166425 - MurERV4_19-int LTR ERVK -3546 2234 300 2 1722 1164 132 63 0 chr1 149029055 149029244 -48166188 - MurERV4_19-int LTR ERVK -5578 202 2 2 1722 3294 204 109 79 chr1 149029250 149030120 -48165312 - RMER19B LTR ERVK -6 896 1 2 1722 646 201 0 109 chr1 149030190 149030391 -48165041 - Lx3A LINE L1 -5 6976 6798 2 1722 201 182 0 0 chr1 149030565 149030598 -48164834 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1722 387 0 0 0 chr1 149032916 149032959 -48162473 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1722 25 0 0 0 chr1 149033096 149033121 -48162311 + AT_rich Low_complexity Low_complexity 1 25 0 2 1722 492 211 103 19 chr1 149034874 149035029 -48160403 + Lx5 LINE L1 6880 7047 -3 2 1722 21 0 0 0 chr1 149036093 149036114 -48159318 + AT_rich Low_complexity Low_complexity 1 21 0 2 1722 275 357 87 12 chr1 149036337 149036510 -48158922 + MIR SINE MIR 2 187 -75 2 1722 1162 68 0 0 chr1 149036574 149036721 -48158711 - B1_Mus1 SINE Alu 0 148 2 2 1722 3479 137 14 19 chr1 149037016 149037588 -48157844 - RLTR1D LTR ERV1 0 605 37 3 1722 1750 245 61 51 chr1 149037794 149037807 -48157625 - RMER19C LTR ERVK 0 611 602 3 1722 234 0 0 0 chr1 149037807 149037833 -48157599 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1722 1750 245 61 51 chr1 149037833 149038422 -48157010 - RMER19C LTR ERVK -10 601 3 3 1722 29 0 0 0 chr1 149038628 149038657 -48156775 + AT_rich Low_complexity Low_complexity 1 29 0 3 1722 1160 82 0 0 chr1 149038696 149038854 -48156578 - B2_Mm1t SINE B2 -30 163 6 3 1722 2998 37 10 43 chr1 149038854 149039248 -48156184 + L1Md_F3 LINE L1 6204 6584 0 3 1722 529 333 36 102 chr1 149039258 149039622 -48155810 + MTD LTR MaLR 39 378 -41 3 1722 2040 215 51 16 chr1 149039664 149040113 -48155319 - RLTR31A_Mm LTR ERVK -119 465 1 3 1722 207 0 0 0 chr1 149041008 149041031 -48154401 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1722 1313 88 0 0 chr1 149041101 149041283 -48154149 + L1_Mus1 LINE L1 6386 6567 0 3 1722 954 284 32 11 chr1 149042127 149042408 -48153024 + Lx8 LINE L1 6408 6694 -779 4 1722 294 367 90 17 chr1 149042539 149042772 -48152660 + Lx8 LINE L1 7202 7451 -22 4 1722 198 0 0 0 chr1 149042844 149042866 -48152566 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1722 2303 291 39 42 chr1 149042999 149043683 -48151749 + Lx9 LINE L1 6526 7186 -458 4 1722 414 0 0 0 chr1 149043683 149043729 -48151703 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1722 2303 291 39 42 chr1 149043729 149043963 -48151469 + Lx9 LINE L1 7187 7441 -203 4 1722 297 0 0 0 chr1 149043985 149044018 -48151414 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1722 26 0 0 0 chr1 149044150 149044176 -48151256 + AT_rich Low_complexity Low_complexity 1 26 0 4 1722 264 309 92 31 chr1 149044417 149044547 -48150885 - MER2 DNA MER2_type -45 300 163 4 1722 1143 189 6 96 chr1 149044547 149044880 -48150552 - Lx6 LINE L1 -438 5442 5140 4 1722 1497 213 22 52 chr1 149044881 149044920 -48150512 + Lx6 LINE L1 5492 5532 -348 4 1722 3423 28 2 0 chr1 149044920 149045315 -48150117 - MTA_Mm LTR MaLR 0 396 1 4 1722 3378 246 29 30 chr1 149045315 149046357 -48149075 + Lx6 LINE L1 5533 6587 -873 4 1722 2666 110 0 5 chr1 149046360 149046752 -48148680 - MTB LTR MaLR -8 392 3 4 1722 5010 96 74 99 chr1 149046850 149047766 -48147666 - RLTR13B1 LTR ERVK 0 893 1 5 1722 580 245 164 21 chr1 149048731 149048969 -48146463 + RLTR10A LTR ERVK 140 411 0 5 1722 294 179 56 56 chr1 149048986 149049057 -48146375 + RLTR45-int LTR ERVK 319 389 -1598 5 1722 2192 326 55 46 chr1 149050076 149052068 -48143364 + IAP-d-int LTR ERVK 3197 5207 -1335 5 1722 5684 88 0 14 chr1 149052128 149052918 -48142514 + L1Md_F2 LINE L1 5804 6582 0 5 1722 1527 233 31 23 chr1 149053077 149053548 -48141884 + RLTR45-int LTR ERVK 6590 7042 -202 5 1722 606 232 183 50 chr1 149053607 149053847 -48141585 + RLTR10A LTR ERVK 140 411 0 5 1722 647 347 15 37 chr1 149054766 149054985 -48140447 + B4 SINE B4 1 213 -79 5 1722 387 0 0 0 chr1 149054985 149055028 -48140404 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 5 1722 647 347 15 37 chr1 149055028 149055080 -48140352 + B4 SINE B4 214 266 -26 5 1722 393 22 0 0 chr1 149056213 149056259 -48139173 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1722 554 281 82 19 chr1 149056857 149057064 -48138368 - RMER5 LTR ERV1 -113 421 202 5 1722 342 0 0 0 chr1 149057163 149057201 -48138231 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1722 183 42 0 0 chr1 149057330 149057354 -48138078 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1722 226 342 43 43 chr1 149057408 149057524 -48137908 + RSINE1 SINE B4 6 121 -44 6 1722 368 274 123 4 chr1 149057525 149057837 -48137595 + L1M2 LINE L1 4432 4781 -1362 6 1722 712 338 8 16 chr1 149058227 149058510 -48136922 + B4A SINE B4 4 276 -16 6 1722 412 246 239 15 chr1 149058577 149058783 -48136649 + L1M2 LINE L1 5152 5403 -743 6 1722 378 0 0 0 chr1 149059130 149059172 -48136260 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1722 537 367 6 82 chr1 149059250 149059547 -48135885 - MT2A LTR ERVL -97 436 165 6 1722 812 242 212 29 chr1 149059547 149059858 -48135574 + ORR1D2 LTR MaLR 3 370 0 6 1722 537 367 6 82 chr1 149059858 149059925 -48135507 - MT2A LTR ERVL -369 164 100 6 1722 498 255 86 16 chr1 149059925 149060112 -48135320 + Lx6 LINE L1 5778 5977 -1483 6 1722 2313 245 30 2 chr1 149060144 149060643 -48134789 + Lx6 LINE L1 6930 7442 -18 6 1722 2991 190 98 12 chr1 149060654 149061319 -48134113 - Lx3C LINE L1 -4 6972 6251 6 1722 4717 60 2 8 chr1 149061771 149062362 -48133070 + LTRIS_Mus LTR ERV1 1 587 0 6 1722 1833 178 57 74 chr1 149062487 149063118 -48132314 - RMER16-int LTR ERVK -3445 1961 1566 6 1722 2798 103 23 0 chr1 149063129 149063519 -48131913 + RMER16-int LTR ERVK 5008 5406 0 7 1722 993 214 35 27 chr1 149063519 149063778 -48131654 + RMER16 LTR ERVK 1 241 -292 7 1722 6475 82 0 3 chr1 149063778 149064631 -48130801 + L1_Mus1 LINE L1 5717 6566 -1 7 1722 850 215 101 14 chr1 149064644 149064852 -48130580 + RMER16 LTR ERVK 225 450 -83 7 1722 402 21 0 0 chr1 149065632 149065679 -48129753 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1722 198 0 0 0 chr1 149065679 149065700 -48129732 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1722 486 290 95 0 chr1 149066787 149066895 -48128537 + B3 SINE B2 27 136 -80 7 1722 330 26 0 0 chr1 149066895 149066934 -48128498 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1722 486 290 95 0 chr1 149066934 149066994 -48128438 + B3 SINE B2 137 210 -6 7 1722 21 57 0 0 chr1 149067819 149067854 -48127578 + AT_rich Low_complexity Low_complexity 1 35 0 7 1722 247 200 42 17 chr1 149068022 149068098 -48127334 + PB1 SINE Alu 34 124 -3 7 1722 23 0 0 0 chr1 149068744 149068767 -48126665 + AT_rich Low_complexity Low_complexity 1 23 0 7 1722 26 0 0 0 chr1 149068903 149068929 -48126503 + AT_rich Low_complexity Low_complexity 1 26 0 7 1722 635 247 108 118 chr1 149069067 149069448 -48125984 - MTEb LTR MaLR 0 379 3 8 1722 362 189 36 0 chr1 149071357 149071468 -48123964 + (TA)n Simple_repeat Simple_repeat 1 115 0 8 1722 366 42 0 0 chr1 149071469 149071517 -48123915 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1722 256 344 56 8 chr1 149071571 149071697 -48123735 + MER89 LTR ERV1 282 413 -146 8 1722 290 243 70 61 chr1 149073155 149073269 -48122163 - MER67C LTR ERV1 -100 611 497 8 1722 297 0 0 0 chr1 149073541 149073574 -48121858 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 1722 231 350 0 0 chr1 149074127 149074187 -48121245 + G-rich Low_complexity Low_complexity 1 60 0 8 1722 928 172 23 12 chr1 149074187 149074526 -48120906 + GA-rich Low_complexity Low_complexity 1 342 0 8 1722 324 0 0 0 chr1 149074528 149074564 -48120868 + (GGAAA)n Simple_repeat Simple_repeat 1 36 0 8 1722 332 292 103 13 chr1 149075539 149075695 -48119737 + L1MCa LINE L1 736 905 -5603 8 1722 675 269 53 0 chr1 149075699 149075870 -48119562 + Lx7 LINE L1 6770 6949 -747 9 1722 773 297 31 15 chr1 149075899 149076159 -48119273 - Lx7 LINE L1 -451 7245 6982 9 1722 2346 93 207 20 chr1 149076174 149076580 -48118852 - RLTR45 LTR ERVK 0 482 1 9 1722 225 200 30 30 chr1 149076580 149076647 -48118785 + Lx7 LINE L1 7270 7336 -360 9 1722 615 60 0 0 chr1 149076651 149076735 -48118697 + (TG)n Simple_repeat Simple_repeat 2 85 0 9 1722 30 0 0 0 chr1 149076873 149076903 -48118529 + AT_rich Low_complexity Low_complexity 1 30 0 9 1722 955 300 70 33 chr1 149076915 149077373 -48118059 - RMER5 LTR ERV1 -10 524 50 9 1722 420 323 64 9 chr1 149077655 149077855 -48117577 + B3A SINE B2 7 216 0 9 1722 979 259 7 32 chr1 149077864 149078143 -48117289 + Lx2B LINE L1 6725 6996 -4 9 1722 249 196 0 0 chr1 149078204 149078255 -48117177 + GA-rich Low_complexity Low_complexity 1 51 0 9 1722 313 274 136 8 chr1 149078282 149078400 -48117032 + L1MCa LINE L1 3966 4098 -2223 8 1722 191 103 26 0 chr1 149078699 149078738 -48116694 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 9 1722 25 51 0 0 chr1 149079193 149079232 -48116200 + AT_rich Low_complexity Low_complexity 1 39 0 1 1722 399 41 0 0 chr1 149079263 149079312 -48116120 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1722 843 25 75 0 chr1 149079312 149079471 -48115961 + (GAA)n Simple_repeat Simple_repeat 3 173 0 1 1722 628 346 15 5 chr1 149079555 149079761 -48115671 - B3 SINE B2 -7 209 2 1 1722 261 119 0 0 chr1 149081512 149081554 -48113878 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1722 339 336 24 24 chr1 149081722 149081847 -48113585 + Lx8 LINE L1 7125 7249 -224 1 1722 1074 210 38 94 chr1 149081919 149082260 -48113172 + RLTRETN_Mm LTR ERVK 1 322 0 1 1722 550 288 0 0 chr1 149082651 149082783 -48112649 + B3A SINE B2 3 134 -64 1 1722 1564 157 57 119 chr1 149083682 149084101 -48111331 - RLTR9C LTR ERVK 0 393 1 1 1722 659 183 185 16 chr1 149084283 149084472 -48110960 - URR1B DNA MER1_type -3 222 2 1 1722 1417 203 119 6 chr1 149085146 149085464 -48109968 - MTC LTR MaLR 0 421 68 1 1722 345 250 35 9 chr1 149085535 149085648 -48109784 - RMER1C Other Other -1 1341 1226 1 1722 279 54 0 0 chr1 149085669 149085706 -48109726 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1722 319 231 0 15 chr1 149085725 149085791 -48109641 - MTC LTR MaLR -356 65 1 1 1722 701 65 0 9 chr1 149085853 149085962 -48109470 + (GTTTG)n Simple_repeat Simple_repeat 2 109 0 1 1722 991 82 0 36 chr1 149085963 149086102 -48109330 - B1_Mm SINE Alu -12 135 2 1 1722 556 241 0 41 chr1 149087883 149088030 -48107402 + B1_Mur3 SINE Alu 9 149 0 1 1722 348 287 39 39 chr1 149088524 149088651 -48106781 + L4 LINE RTE 1341 1467 -562 1 1722 408 295 143 11 chr1 149089175 149089350 -48106082 + B3 SINE B2 2 199 -17 1 1722 2493 218 2 30 chr1 149090293 149090692 -48104740 + RMER1B Other Other 552 936 -130 1 1722 351 44 0 0 chr1 149090692 149090737 -48104695 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1722 2493 218 2 30 chr1 149090737 149090863 -48104569 + RMER1B Other Other 937 1062 -4 1 1722 23 33 0 0 chr1 149090967 149090997 -48104435 + AT_rich Low_complexity Low_complexity 1 30 0 1 1722 3064 223 21 8 chr1 149091392 149092052 -48103380 - Lx2B LINE L1 -6 6994 6326 1 1722 682 157 9 0 chr1 149092052 149092167 -48103265 - B2_Mm2 SINE B2 -79 116 1 1 1722 220 306 14 0 chr1 149092476 149092548 -48102884 + GA-rich Low_complexity Low_complexity 3 75 0 1 1722 659 274 73 15 chr1 149092555 149092759 -48102673 + B3A SINE B2 1 216 0 1 1722 33 0 0 0 chr1 149092788 149092821 -48102611 + AT_rich Low_complexity Low_complexity 1 33 0 1 1722 588 29 0 0 chr1 149094822 149094892 -48100540 + (TATG)n Simple_repeat Simple_repeat 2 71 0 1 1722 315 304 78 0 chr1 149095532 149095647 -48099785 - L1MC4 LINE L1 -1139 6903 6780 1 1722 270 0 0 0 chr1 149096681 149096711 -48098721 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1722 230 0 33 0 chr1 149097270 149097300 -48098132 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1722 696 152 103 0 chr1 149097312 149097457 -48097975 + Lx3A LINE L1 6811 6970 -11 1 1722 275 0 29 0 chr1 149097458 149097493 -48097939 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1722 1152 54 0 0 chr1 149097503 149097651 -48097781 + (GAAA)n Simple_repeat Simple_repeat 3 150 0 1 1722 443 295 101 19 chr1 149097970 149098183 -48097249 + MIR SINE MIR 15 238 -30 1 1722 553 362 139 34 chr1 149099878 149100324 -48095108 - MER54B LTR ERVL -7 786 294 1 1722 314 286 109 77 chr1 149100532 149100752 -48094680 - L1M1 LINE L1 -535 5765 5539 1 1722 411 56 0 0 chr1 149100848 149100902 -48094530 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1722 547 271 34 14 chr1 149100978 149101124 -48094308 - B1_Mur2 SINE Alu 0 149 1 1 1722 690 0 0 0 chr1 149103108 149103193 -48092239 - L1Md_A LINE L1 0 6582 6498 1 1722 2859 139 2 13 chr1 149103517 149103970 -48091462 + Lx2 LINE L1 6346 6793 -204 1 1722 786 117 0 0 chr1 149104008 149104128 -48091304 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 1 1722 1280 148 17 4 chr1 149104130 149104367 -48091065 - Lx LINE L1 -13 6641 6402 1 1722 495 319 98 83 chr1 149105744 149105899 -48089533 - RLTR23 LTR ERV1 -7 423 265 1 1722 1233 117 5 5 chr1 149105899 149106088 -48089344 + B2_Mm2 SINE B2 1 189 -6 1 1722 495 319 98 83 chr1 149106088 149106339 -48089093 - RLTR23 LTR ERV1 -166 264 11 1 1722 432 0 0 0 chr1 149106811 149106859 -48088573 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1722 409 325 100 11 chr1 149106892 149107153 -48088279 - B4A SINE B4 -8 284 1 1 1722 3527 142 5 104 chr1 149107439 149108195 -48087237 - L1_Mus3 LINE L1 -401 5482 4802 1 1722 7551 95 13 2 chr1 149108181 149109295 -48086137 + L1_Mus3 LINE L1 5513 6637 -1 1 1722 802 296 7 49 chr1 149109786 149110070 -48085362 - Lx9 LINE L1 -564 7080 6809 1 1722 1343 250 35 19 chr1 149110074 149110504 -48084928 + Lx9 LINE L1 5457 5913 -1731 1 1722 831 308 100 15 chr1 149110678 149111077 -48084355 + Lx9 LINE L1 6366 6798 -846 1 1722 1325 146 0 0 chr1 149111122 149111321 -48084111 + Lx4B LINE L1 6409 6607 -451 1 1722 5064 44 2 0 chr1 149111326 149111941 -48083491 - L1Md_F2 LINE L1 0 6582 5967 1 1722 1195 132 5 0 chr1 149111941 149112130 -48083302 + L1_Mm LINE L1 4952 5141 -742 1 1722 2342 184 39 19 chr1 149112119 149112592 -48082840 + Lx4B LINE L1 6428 7028 -30 1 1722 275 255 0 0 chr1 149112747 149112798 -48082634 + ID4 SINE ID 1 51 -32 1 1722 658 204 0 93 chr1 149113747 149113909 -48081523 + B1_Mur4 SINE Alu 3 149 -1 1 1722 271 284 0 0 chr1 149114020 149114094 -48081338 - RSINE1 SINE B4 -36 129 56 1 1722 180 0 0 0 chr1 149114279 149114299 -48081133 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1 1722 315 0 0 0 chr1 149114299 149114333 -48081099 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 1722 195 42 0 0 chr1 149115457 149115481 -48079951 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1722 23 78 0 0 chr1 149116131 149116182 -48079250 + AT_rich Low_complexity Low_complexity 1 51 0 1 1722 585 200 44 0 chr1 149116296 149116431 -48079001 + Lx3B LINE L1 6833 6973 0 1 1722 393 256 277 12 chr1 149116751 149116887 -48078545 + B3 SINE B2 2 183 -33 1 1722 441 103 0 0 chr1 149116887 149116955 -48078477 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1 1722 393 256 277 12 chr1 149116955 149116984 -48078448 + B3 SINE B2 184 211 -5 1 1722 709 319 5 0 chr1 149117012 149117203 -48078229 + B4A SINE B4 101 292 0 1 1722 192 125 0 0 chr1 149117215 149117247 -48078185 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 1 1722 2225 80 3 3 chr1 149117683 149117986 -48077446 + L1_Mus2 LINE L1 6264 6566 0 1 1722 26 0 0 0 chr1 149118228 149118254 -48077178 + AT_rich Low_complexity Low_complexity 1 26 0 1 1722 266 327 83 9 chr1 149118368 149118476 -48076956 - MIRc SINE MIR -135 133 18 1 1722 23 33 0 0 chr1 149118616 149118646 -48076786 + AT_rich Low_complexity Low_complexity 1 30 0 1 1722 264 252 125 1 chr1 149118716 149118817 -48076615 - PB1D9 SINE Alu -30 119 9 1 1722 228 294 0 42 chr1 149118754 149118825 -48076607 - MT2B LTR ERVL -366 235 168 1 1722 363 379 109 11 chr1 149119069 149119336 -48076096 - MLT1-int LTR MaLR -452 919 627 1 1722 291 288 88 59 chr1 149119501 149119671 -48075761 - RMER15 LTR ERVL -40 535 361 1 1722 781 239 247 91 chr1 149119671 149120132 -48075300 - MT2A LTR ERVL 0 533 1 1 1722 303 336 56 28 chr1 149120585 149120692 -48074740 + MTE2b LTR MaLR 8 117 -262 1 1722 13003 62 17 1 chr1 149121344 149123147 -48072285 + L1Md_F2 LINE L1 4121 5959 -623 1 1722 2213 70 108 0 chr1 149123147 149123505 -48071927 - L1_Mus1 LINE L1 0 6567 6210 1 1722 1088 129 0 0 chr1 149123505 149123660 -48071772 + L1_Mm LINE L1 5493 5647 -236 1 1722 825 362 25 0 chr1 149123895 149124210 -48071222 + MTE2b LTR MaLR 48 370 -9 1 1722 21 57 0 0 chr1 149125178 149125213 -48070219 + AT_rich Low_complexity Low_complexity 1 35 0 1 1722 477 312 28 17 chr1 149126588 149126764 -48068668 - B3A SINE B2 -18 180 3 1 1722 1143 235 24 4 chr1 149127374 149127626 -48067806 + MTC LTR MaLR 1 257 -164 1 1722 238 191 0 0 chr1 149127635 149127682 -48067750 + MTC LTR MaLR 375 421 0 1 1722 1007 230 193 55 chr1 149127767 149128094 -48067338 - ORR1C1 LTR MaLR -4 374 3 1 1722 225 247 80 34 chr1 149128095 149128183 -48067249 - L1M5 LINE L1 -565 5879 5788 1 1722 486 33 0 0 chr1 149128402 149128462 -48066970 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1722 869 142 0 0 chr1 149129376 149129517 -48065915 - L1_Mm LINE L1 -821 5062 4922 1 1722 38518 4 0 0 chr1 149129517 149134895 -48060537 + L1Md_A LINE L1 208 5586 -297 1 1722 8971 4 0 0 chr1 149134895 149135891 -48059541 + L1Md_A LINE L1 5587 6582 0 1 1722 2143 123 9 0 chr1 149135896 149136221 -48059211 - L1_Mm LINE L1 -945 4938 4611 1 1722 7254 95 2 5 chr1 149136220 149137725 -48057707 + L1_Mus1 LINE L1 5066 6567 0 1 1722 282 257 86 80 chr1 149138820 149139232 -48056200 + RMER4A LTR ERVK 119 568 -17 1 1722 30 49 0 16 chr1 149139881 149139915 -48055517 + AT_rich Low_complexity Low_complexity 1 34 0 1 1722 1202 88 0 0 chr1 149139915 149140075 -48055357 + L1_Mus1 LINE L1 6408 6567 0 1 1722 30 49 0 16 chr1 149140075 149140102 -48055330 + AT_rich Low_complexity Low_complexity 1 27 0 1 1722 719 88 0 9 chr1 149141139 149141253 -48054179 + (TCTCCC)n Simple_repeat Simple_repeat 3 115 0 1 1722 618 26 0 0 chr1 149141253 149141328 -48054104 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1722 23 0 0 0 chr1 149141575 149141598 -48053834 + AT_rich Low_complexity Low_complexity 1 23 0 1 1722 281 118 20 0 chr1 149141726 149141777 -48053655 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1 1722 24 0 0 0 chr1 149142620 149142644 -48052788 + AT_rich Low_complexity Low_complexity 1 24 0 1 1722 211 189 0 0 chr1 149143327 149143364 -48052068 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1722 897 10 0 0 chr1 149143629 149143731 -48051701 + (TTC)n Simple_repeat Simple_repeat 3 104 0 1 1722 2811 134 36 20 chr1 149144158 149144654 -48050778 + Lx2 LINE L1 6494 6997 0 1 1722 207 0 0 0 chr1 149144706 149144729 -48050703 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1722 4275 8 0 0 chr1 149146159 149146637 -48048795 + L1Md_A LINE L1 6103 6580 -2 2 1722 339 44 0 0 chr1 149147618 149147663 -48047769 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1722 677 90 0 0 chr1 149148452 149148541 -48046891 - L1_Mus1 LINE L1 -209 6358 6270 2 1722 1548 57 38 14 chr1 149148541 149148754 -48046678 + L1_Mus1 LINE L1 6348 6565 -2 2 1722 285 304 98 62 chr1 149148868 149149061 -48046371 - Lx8 LINE L1 -1106 6367 6168 2 1722 8062 145 38 55 chr1 149149281 149151034 -48044398 - Lx2A1 LINE L1 -6 7002 5290 2 1722 1784 154 24 18 chr1 149151034 149151372 -48044060 - Lx LINE L1 -1 6653 6314 2 1722 3569 194 53 49 chr1 149151372 149151609 -48043823 - Lx2A1 LINE L1 -597 5289 5046 2 1722 25 51 0 0 chr1 149151771 149151810 -48043622 + AT_rich Low_complexity Low_complexity 1 39 0 2 1722 338 287 86 80 chr1 149151831 149151994 -48043438 + B3 SINE B2 1 164 -31 2 1722 444 67 0 0 chr1 149151998 149152058 -48043374 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1722 326 272 0 0 chr1 149152608 149152689 -48042743 + MT2A LTR ERVL 1 81 -452 2 1722 583 277 15 71 chr1 149152692 149152890 -48042542 - B3A SINE B2 -3 195 9 2 1722 24 32 0 0 chr1 149153094 149153125 -48042307 + AT_rich Low_complexity Low_complexity 1 31 0 2 1722 51 58 0 0 chr1 149153167 149153253 -48042179 + AT_rich Low_complexity Low_complexity 1 86 0 2 1722 426 347 73 59 chr1 149153365 149153736 -48041696 - LTR68 LTR ERV1 -69 671 296 2 1722 800 271 67 24 chr1 149154312 149154565 -48040867 + Lx6 LINE L1 6999 7262 -198 2 1722 1246 170 0 18 chr1 149154595 149154822 -48040610 - Lx2 LINE L1 0 6997 6775 2 1722 667 142 0 17 chr1 149154822 149154937 -48040495 - Lx2 LINE L1 -354 6643 6531 2 1722 709 257 24 24 chr1 149154937 149155192 -48040240 - L1MA8 LINE L1 -391 5900 5646 2 1722 329 250 37 0 chr1 149155607 149155715 -48039717 - L1MA8 LINE L1 -800 5500 5389 2 1722 378 294 22 33 chr1 149155719 149155903 -48039529 - B3 SINE B2 0 216 36 2 1722 243 297 59 19 chr1 149155955 149156181 -48039251 - L1MA8 LINE L1 -769 5374 5130 2 1722 402 21 0 0 chr1 149156181 149156228 -48039204 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1722 291 28 0 0 chr1 149156230 149156266 -48039166 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1722 373 337 106 53 chr1 149157490 149157888 -48037544 + RMER5 LTR ERV1 3 421 -113 2 1722 582 94 35 0 chr1 149159404 149159489 -48035943 - Lx3_Mus LINE L1 -1139 5870 5783 2 1722 198 0 0 0 chr1 149159489 149159511 -48035921 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1722 333 0 0 0 chr1 149159596 149159633 -48035799 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 215 4117 112 5 10 chr1 149159681 149160302 -48035130 - Lx3_Mus LINE L1 -88 5798 5181 2 1723 5492 116 64 5 chr1 149160302 149161151 -48034281 + Lx3_Mus LINE L1 6111 7009 0 2 1723 396 0 0 0 chr1 149161314 149161358 -48034074 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1723 516 264 11 65 chr1 149161460 149161723 -48033709 + L1_Mur3 LINE L1 1354 1602 -4278 2 1723 2416 171 65 0 chr1 149161762 149162240 -48033192 + L1_Mm LINE L1 5141 5649 -234 2 1723 2850 184 67 17 chr1 149162225 149162805 -48032627 + Lx2B LINE L1 6388 6996 -4 2 1723 618 131 0 0 chr1 149162984 149163083 -48032349 + (TTTC)n Simple_repeat Simple_repeat 1 99 0 2 1723 6396 83 10 9 chr1 149163086 149163969 -48031463 - L1_Mus4 LINE L1 -6 6630 5747 2 1723 270 333 0 0 chr1 149163969 149164071 -48031361 + L1_Mur3 LINE L1 1814 1915 -3965 2 1723 264 116 0 0 chr1 149164073 149164116 -48031316 - U5 snRNA snRNA -73 43 1 2 1723 901 170 48 34 chr1 149164130 149164337 -48031095 + Lx2 LINE L1 6788 6997 0 2 1723 405 237 7 118 chr1 149164512 149164665 -48030767 - Lx8 LINE L1 -310 7163 7028 2 1723 411 68 0 0 chr1 149164883 149164942 -48030490 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1723 25 31 0 0 chr1 149166265 149166297 -48029135 + AT_rich Low_complexity Low_complexity 1 32 0 2 1723 22 0 0 0 chr1 149166529 149166551 -48028881 + AT_rich Low_complexity Low_complexity 1 22 0 2 1723 579 335 39 0 chr1 149166839 149167021 -48028411 - B3 SINE B2 -25 191 3 2 1723 225 271 134 10 chr1 149170447 149170544 -48024888 - RLTR25B LTR ERVK -350 678 570 2 1723 665 274 39 81 chr1 149170900 149171210 -48024222 + Lx8 LINE L1 6641 6937 -536 2 1723 356 369 58 32 chr1 149171268 149171679 -48023753 + Lx8 LINE L1 7049 7470 -3 2 1723 986 52 0 0 chr1 149171830 149171946 -48023486 + L1Md_F2 LINE L1 5471 5586 -297 2 1723 7869 53 3 3 chr1 149171946 149172942 -48022490 + L1Md_F2 LINE L1 5587 6582 0 2 1723 354 45 0 0 chr1 149173027 149173071 -48022361 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1723 7281 46 2 0 chr1 149173116 149174007 -48021425 + L1Md_F2 LINE L1 5681 6573 -9 2 1723 775 301 167 45 chr1 149175316 149176035 -48019397 - MER63D DNA AcHobo 0 1061 255 2 1723 23 0 0 0 chr1 149176102 149176125 -48019307 + AT_rich Low_complexity Low_complexity 1 23 0 2 1723 669 333 8 33 chr1 149176166 149176408 -48019024 - Lx5 LINE L1 -1 7049 6814 2 1723 8181 95 26 15 chr1 149176391 149177196 -48018236 + Lx3_Mus LINE L1 5101 5919 -1090 2 1723 270 0 0 0 chr1 149177196 149177226 -48018206 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1723 8181 122 23 74 chr1 149177226 149178403 -48017029 + Lx3_Mus LINE L1 5920 7007 -2 2 1723 3460 232 42 18 chr1 149178418 149179044 -48016388 - L1_Mur2 LINE L1 -8 5869 5241 2 1723 387 0 0 0 chr1 149179044 149179087 -48016345 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1723 3460 232 42 18 chr1 149179087 149179147 -48016285 - L1_Mur2 LINE L1 -637 5240 5161 2 1723 272 49 49 0 chr1 149179147 149179188 -48016244 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1723 3460 232 42 18 chr1 149179188 149179399 -48016033 - L1_Mur2 LINE L1 -717 5160 4950 2 1723 192 40 0 0 chr1 149179399 149179424 -48016008 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1723 6523 134 44 3 chr1 149179424 149180497 -48014935 - Lx2 LINE L1 -8 6989 5873 2 1723 37296 48 2 3 chr1 149180528 149186701 -48008731 - L1Md_T LINE L1 0 6585 321 2 1723 13683 209 54 30 chr1 149186702 149190450 -48004982 - L1_Mur2 LINE L1 -919 4958 1055 2 1723 1699 90 4 23 chr1 149190451 149190713 -48004719 + L1_Mus2 LINE L1 6308 6564 -2 2 1723 436 351 36 43 chr1 149191067 149191347 -48004085 - RLTR16 LTR ERVK -227 278 1 2 1723 402 297 19 6 chr1 149191349 149191505 -48003927 - L1_Mur2 LINE L1 -6622 1106 949 2 1723 531 31 0 0 chr1 149191618 149191683 -48003749 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1723 22 35 0 0 chr1 149191916 149191945 -48003487 + AT_rich Low_complexity Low_complexity 1 29 0 2 1723 728 236 36 10 chr1 149192763 149192956 -48002476 - Lx9 LINE L1 -265 7379 7182 2 1723 264 354 111 17 chr1 149193579 149193760 -48001672 + MIR SINE MIR 30 227 -35 2 1723 22 0 0 0 chr1 149194618 149194640 -48000792 + AT_rich Low_complexity Low_complexity 1 22 0 2 1723 234 81 0 0 chr1 149195122 149195159 -48000273 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 2 1723 192 40 0 0 chr1 149195325 149195350 -48000082 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1723 516 358 0 0 chr1 149195363 149195497 -47999935 - RSINE1 SINE B4 -29 136 3 2 1723 31954 87 30 13 chr1 149195764 149201927 -47993505 - L1Md_F2 LINE L1 -12 6570 307 2 1723 3362 71 5 0 chr1 149203281 149203763 -47991669 - L1Md_F2 LINE L1 -565 6019 5535 2 1723 4378 52 0 0 chr1 149203763 149204300 -47991132 + L1Md_F2 LINE L1 6032 6568 -14 2 1723 4650 94 102 17 chr1 149204302 149205014 -47990418 - L1_Mus3 LINE L1 -8 6630 5858 2 1723 25 51 0 0 chr1 149205158 149205197 -47990235 + AT_rich Low_complexity Low_complexity 1 39 0 2 1723 369 109 0 0 chr1 149205205 149205260 -47990172 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1723 378 0 0 0 chr1 149205260 149205302 -47990130 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1723 459 125 0 0 chr1 149205466 149205538 -47989894 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1723 22 99 0 0 chr1 149205603 149205674 -47989758 + AT_rich Low_complexity Low_complexity 1 71 0 2 1723 4455 268 62 31 chr1 149205674 149206756 -47988676 - Lx6 LINE L1 -154 7542 6138 2 1723 2906 39 67 15 chr1 149206756 149207147 -47988285 - IAPLTR2a LTR ERVK 0 411 1 2 1723 4455 271 65 35 chr1 149207147 149207421 -47988011 - Lx6 LINE L1 -1323 6137 5874 2 1723 1041 110 0 0 chr1 149207421 149207566 -47987866 - B1_Mus1 SINE Alu -2 146 2 2 1723 4455 271 65 35 chr1 149207566 149207651 -47987781 - Lx6 LINE L1 -1587 5873 5791 2 1723 687 35 0 0 chr1 149207672 149207758 -47987674 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1723 911 199 33 0 chr1 149207763 149207944 -47987488 - RLTR20B3 LTR ERVK -390 187 1 2 1723 225 0 0 0 chr1 149208291 149208316 -47987116 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1723 329 370 0 8 chr1 149208360 149208488 -47986944 - MT2A LTR ERVL -74 459 333 2 1723 1840 341 82 29 chr1 149208824 149209961 -47985471 - ERVL-E-int LTR ERVL -380 5287 4091 2 1723 319 358 82 43 chr1 149210144 149210375 -47985057 - MT2A LTR ERVL -150 383 144 2 1723 244 272 71 61 chr1 149210495 149210593 -47984839 + MLT2B2 LTR ERVL 101 199 -316 2 1723 253 381 62 16 chr1 149210653 149210781 -47984651 + MLT2B2 LTR ERVL 392 525 -37 2 1723 22 70 0 0 chr1 149210950 149210993 -47984439 + AT_rich Low_complexity Low_complexity 1 43 0 2 1723 21 0 0 0 chr1 149211268 149211289 -47984143 + AT_rich Low_complexity Low_complexity 1 21 0 2 1723 318 50 0 0 chr1 149211454 149211494 -47983938 + (CTAA)n Simple_repeat Simple_repeat 3 42 0 2 1723 334 350 45 49 chr1 149211614 149211878 -47983554 + L1M3e LINE L1 22 284 -6746 2 1723 513 359 28 16 chr1 149212135 149212387 -47983045 + Lx8 LINE L1 7062 7316 -157 2 1723 312 328 32 57 chr1 149213172 149213295 -47982137 + RMER15 LTR ERVL 454 573 -2 2 1723 481 253 179 53 chr1 149213576 149213822 -47981610 + RLTR10A LTR ERVK 135 411 0 2 1723 320 238 54 54 chr1 149213838 149213949 -47981483 + RLTR10-int LTR ERVK 318 428 -1559 2 1723 411 247 46 46 chr1 149214211 149214364 -47981068 + IAP-d-int LTR ERVK 2241 2393 -4149 2 1723 2032 317 46 43 chr1 149214411 149216252 -47979180 + IAP-d-int LTR ERVK 3339 5474 -2107 2 1723 1785 217 15 25 chr1 149216357 149216847 -47978585 + IAP-d-int LTR ERVK 6529 7042 -202 2 1723 548 244 174 75 chr1 149216862 149217128 -47978304 + RLTR10A LTR ERVK 104 411 0 2 1723 275 292 131 45 chr1 149217809 149217985 -47977447 + MTEa LTR MaLR 185 375 -4 2 1723 23 54 0 0 chr1 149218261 149218298 -47977134 + AT_rich Low_complexity Low_complexity 1 37 0 2 1723 280 315 105 47 chr1 149218705 149219278 -47976154 + L1M2 LINE L1 2218 2823 -3320 2 1723 1068 92 0 0 chr1 149219517 149219658 -47975774 + Lx3_Mus LINE L1 6736 6876 -133 2 1723 2719 84 71 5 chr1 149219658 149220053 -47975379 + BGLII LTR ERVK 1 421 0 2 1723 521 139 0 0 chr1 149220462 149220550 -47974882 + RMER3D-int LTR ERVK 489 564 -2278 2 1723 505 243 10 64 chr1 149220572 149220774 -47974658 + RMER3D-int LTR ERVK 659 849 -1993 2 1723 2406 226 92 102 chr1 149220835 149221916 -47973516 + RMER3D-int LTR ERVK 627 1697 -1145 2 1723 3128 207 52 45 chr1 149221916 149222821 -47972611 + RMER3D-int LTR ERVK 1927 2837 -5 2 1723 3069 86 2 2 chr1 149222827 149223246 -47972186 + BGLII LTR ERVK 2 420 -1 2 1723 377 215 83 0 chr1 149223246 149223367 -47972065 + Lx3_Mus LINE L1 6870 7000 -9 2 1723 24 32 0 0 chr1 149223369 149223400 -47972032 + AT_rich Low_complexity Low_complexity 1 31 0 2 1723 1751 266 73 21 chr1 149223445 149223968 -47971464 + Lx6 LINE L1 6908 7457 -3 3 1723 622 358 65 11 chr1 149224097 149224360 -47971072 + B4A SINE B4 14 290 -2 3 1723 479 276 89 48 chr1 149224643 149225010 -47970422 + L1M2 LINE L1 5191 5571 -726 2 1723 215 163 0 44 chr1 149225040 149225085 -47970347 + B1_Mus1 SINE Alu 16 58 -90 3 1723 290 243 0 0 chr1 149225086 149225156 -47970276 + GA-rich Low_complexity Low_complexity 2 71 0 3 1723 548 179 18 28 chr1 149225159 149225268 -47970164 + B1_Mus2 SINE Alu 40 147 0 3 1723 213 65 0 0 chr1 149225552 149225583 -47969849 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1723 378 107 0 0 chr1 149225713 149225769 -47969663 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1723 219 326 98 0 chr1 149226272 149226364 -47969068 + PB1D10 SINE Alu 9 109 -8 3 1723 21 71 0 0 chr1 149226575 149226617 -47968815 + AT_rich Low_complexity Low_complexity 1 42 0 3 1723 25 65 0 0 chr1 149226718 149226764 -47968668 + AT_rich Low_complexity Low_complexity 1 46 0 3 1723 6167 112 20 37 chr1 149227316 149228321 -47967111 - L1_Mus2 LINE L1 -554 5329 4342 3 1723 6485 112 18 6 chr1 149228322 149229540 -47965892 + L1_Mus2 LINE L1 5336 6562 -4 3 1723 511 321 102 36 chr1 149229544 149229663 -47965769 - Lx5 LINE L1 -17 7443 7310 3 1723 331 21 42 0 chr1 149229663 149229711 -47965721 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1723 581 312 193 31 chr1 149229711 149230073 -47965359 - Lx5 LINE L1 -185 6865 6506 3 1723 25 51 0 0 chr1 149230189 149230228 -47965204 + AT_rich Low_complexity Low_complexity 1 39 0 3 1723 513 98 118 11 chr1 149230500 149230593 -47964839 + RLTR13C2 LTR ERVK 706 808 0 3 1723 810 310 32 40 chr1 149230648 149230887 -47964545 - Lx9 LINE L1 -374 7270 7038 3 1723 438 20 0 0 chr1 149230887 149230938 -47964494 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1723 810 310 32 40 chr1 149230938 149231078 -47964354 - Lx9 LINE L1 -607 7037 6894 3 1723 186 43 0 0 chr1 149231156 149231179 -47964253 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1723 6238 10 0 6 chr1 149231184 149231892 -47963540 - L1Md_T LINE L1 0 6582 5879 3 1723 477 62 0 0 chr1 149232585 149232650 -47962782 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1723 552 84 0 0 chr1 149233267 149233350 -47962082 + (CAAAA)n Simple_repeat Simple_repeat 3 85 0 3 1723 934 196 111 115 chr1 149233698 149233986 -47961446 + ORR1B1 LTR MaLR 41 327 -67 3 1723 180 117 15 77 chr1 149233991 149234056 -47961376 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 3 1723 264 336 61 17 chr1 149234266 149234496 -47960936 + Lx9 LINE L1 5838 6077 -1567 3 1723 1227 333 92 25 chr1 149234592 149234637 -47960795 + Lx9 LINE L1 6362 6403 -1241 3 1723 180 77 0 0 chr1 149234637 149234663 -47960769 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1723 1227 333 92 25 chr1 149234663 149235269 -47960163 + Lx9 LINE L1 6404 7057 -587 3 1723 311 298 0 31 chr1 149235549 149235646 -47959786 + L1M2 LINE L1 3068 3161 -2982 3 1723 323 358 26 8 chr1 149236377 149236611 -47958821 + L1M2 LINE L1 5367 5604 -699 3 1723 205 118 19 19 chr1 149236620 149236672 -47958760 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 3 1723 4418 114 121 1 chr1 149236799 149237494 -47957938 + L1_Mus3 LINE L1 5850 6627 -11 3 1723 322 271 6 114 chr1 149237752 149237871 -47957561 + B4A SINE B4 106 214 -78 3 1723 183 42 0 0 chr1 149237871 149237895 -47957537 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1723 322 271 6 114 chr1 149237895 149237933 -47957499 + B4A SINE B4 215 245 -47 3 1723 351 293 111 47 chr1 149238924 149239096 -47956336 - MER54A LTR ERVL -651 250 68 3 1723 296 172 53 21 chr1 149239426 149239521 -47955911 + (TTTA)n Simple_repeat Simple_repeat 4 101 0 3 1723 1184 61 0 0 chr1 149240221 149240369 -47955063 - B1_Mus1 SINE Alu 0 148 1 3 1723 270 317 94 61 chr1 149240412 149240624 -47954808 - L1MA4A LINE L1 -306 5997 5779 3 1723 1068 317 71 16 chr1 149240626 149241004 -47954428 - MTD LTR MaLR -15 404 6 3 1723 297 75 0 0 chr1 149241028 149241068 -47954364 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1723 1856 296 132 68 chr1 149241083 149242049 -47953383 - MTC-int LTR MaLR -60 1198 166 3 1723 906 309 42 19 chr1 149242049 149242409 -47953023 + ORR1D2 LTR MaLR 3 370 0 3 1723 1856 296 132 68 chr1 149242409 149242462 -47952970 - MTC-int LTR MaLR -1093 165 113 3 1723 1125 281 67 67 chr1 149242536 149242826 -47952606 - MTD LTR MaLR -1 418 104 3 1723 661 40 0 10 chr1 149242826 149242926 -47952506 - L1Md_F2 LINE L1 -11 6571 6473 3 1723 1125 281 67 67 chr1 149242926 149243039 -47952393 - MTD LTR MaLR -316 103 15 3 1723 353 311 84 51 chr1 149243046 149243541 -47951891 - L1MA4A LINE L1 -389 5785 5256 3 1723 11369 170 28 36 chr1 149244031 149244477 -47950955 - L1_Mur1 LINE L1 -1108 4778 4384 3 1723 249 83 0 0 chr1 149244477 149244513 -47950919 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1723 1028 88 7 0 chr1 149244516 149244653 -47950779 - B1_Mus2 SINE Alu -6 141 4 3 1723 11369 170 28 36 chr1 149244653 149246639 -47948793 - L1_Mur1 LINE L1 -1503 4383 2364 3 1723 418 335 68 32 chr1 149246648 149246929 -47948503 - L1MA4A LINE L1 -2477 3666 3376 3 1723 748 86 36 0 chr1 149246951 149247091 -47948341 + (TCTA)n Simple_repeat Simple_repeat 2 146 0 3 1723 488 244 50 58 chr1 149247191 149247330 -47948102 - B1F2 SINE Alu -8 141 4 3 1723 1731 292 42 40 chr1 149247366 149247911 -47947521 - RMER15 LTR ERVL -2 573 28 3 1723 607 217 123 76 chr1 149248557 149248934 -47946498 - RMER2 LTR ERV1 -134 433 3 3 1723 540 119 16 16 chr1 149250488 149250616 -47944816 + (TCTA)n Simple_repeat Simple_repeat 4 131 0 3 1723 300 349 15 8 chr1 149251317 149251450 -47943982 - Ricksha_c DNA MuDR -1560 488 355 3 1723 845 306 39 30 chr1 149252222 149252583 -47942849 + ORR1D2 LTR MaLR 3 366 -4 3 1723 740 310 18 12 chr1 149252596 149252923 -47942509 - L1_Mur3 LINE L1 -1606 4274 3946 3 1723 410 128 26 0 chr1 149252932 149253010 -47942422 + L1_Mus3 LINE L1 6559 6638 0 3 1723 395 304 11 96 chr1 149254809 149254987 -47940445 + RSINE1 SINE B4 3 165 0 3 1723 318 95 0 0 chr1 149254987 149255029 -47940403 + HAL1-3A_ME LINE L1 1975 2016 -842 3 1723 615 153 0 0 chr1 149255030 149255161 -47940271 + (CA)n Simple_repeat Simple_repeat 2 132 0 3 1723 305 170 0 19 chr1 149255162 149255216 -47940216 + HAL1-3A_ME LINE L1 1978 2030 -828 3 1723 729 167 0 0 chr1 149255237 149255411 -47940021 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 1723 189 0 0 0 chr1 149255413 149255434 -47939998 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1723 337 353 22 15 chr1 149256169 149256304 -47939128 + ID_B1 SINE B4 88 223 -1 3 1723 498 359 5 16 chr1 149257329 149257516 -47937916 + Lx8 LINE L1 7053 7237 -236 3 1723 293 329 28 28 chr1 149257569 149257713 -47937719 - Lx8 LINE L1 -470 7003 6860 3 1723 742 282 108 24 chr1 149257715 149258002 -47937430 + ORR1C2 LTR MaLR 74 384 0 3 1723 405 0 0 0 chr1 149258195 149258240 -47937192 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1723 6433 43 1 2 chr1 149259856 149260642 -47934790 - L1Md_F2 LINE L1 -13 6569 5785 3 1723 1550 259 95 65 chr1 149260953 149261098 -47934334 - RMER6C LTR ERVK 0 756 590 3 1723 1117 101 0 0 chr1 149261098 149261246 -47934186 - B1_Mus1 SINE Alu 0 148 1 3 1723 2260 186 84 40 chr1 149261246 149261531 -47933901 - RMER6C LTR ERVK -78 612 316 3 1723 351 0 0 0 chr1 149261531 149261570 -47933862 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1723 2260 186 84 40 chr1 149261570 149261586 -47933846 - RMER6C LTR ERVK -359 331 308 3 1723 2956 156 4 2 chr1 149261586 149262068 -47933364 - Lx3A LINE L1 -1 6980 6498 3 1723 2260 186 84 40 chr1 149262068 149262351 -47933081 - RMER6C LTR ERVK -383 307 6 3 1723 456 312 12 49 chr1 149262384 149262546 -47932886 + RMER15 LTR ERVL 401 556 -19 3 1723 2987 29 2 37 chr1 149263240 149263642 -47931790 - RLTR10 LTR ERVK -2 388 1 3 1723 16472 27 15 1 chr1 149263644 149265562 -47929870 - RLTR10-int LTR ERVK -3 1984 41 3 1723 3169 31 2 37 chr1 149265572 149265976 -47929456 - RLTR10 LTR ERVK 0 390 1 3 1723 21 57 0 0 chr1 149266181 149266216 -47929216 + AT_rich Low_complexity Low_complexity 1 35 0 3 1723 29 47 0 0 chr1 149266707 149266750 -47928682 + AT_rich Low_complexity Low_complexity 1 43 0 3 1723 228 67 0 0 chr1 149266750 149266780 -47928652 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1723 395 363 55 47 chr1 149267112 149267476 -47927956 + L1MCb LINE L1 5 371 -5674 3 1723 251 351 25 35 chr1 149267652 149267850 -47927582 + L1MC3 LINE L1 7314 7509 -276 3 1723 1561 162 11 4 chr1 149267929 149268195 -47927237 + RLTR17 LTR ERVK 1 268 -424 3 1723 1202 200 91 22 chr1 149268197 149268473 -47926959 + RLTR17 LTR ERVK 398 692 0 3 1723 239 256 100 8 chr1 149268484 149268614 -47926818 + L1MC3 LINE L1 7597 7738 -47 3 1723 21 36 0 0 chr1 149268650 149268678 -47926754 + AT_rich Low_complexity Low_complexity 1 28 0 3 1723 423 0 0 0 chr1 149268863 149268910 -47926522 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1723 589 250 17 89 chr1 149268971 149269151 -47926281 + B4 SINE B4 125 291 -1 3 1723 218 311 0 0 chr1 149269153 149269214 -47926218 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1723 432 328 93 18 chr1 149269388 149269773 -47925659 - L1M5 LINE L1 -425 5754 5341 3 1723 347 311 40 724 chr1 149270077 149270107 -47925325 - B3A SINE B2 -7 191 165 3 1723 564 42 0 0 chr1 149270107 149270178 -47925254 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1723 347 322 91 11 chr1 149270178 149270345 -47925087 - B3A SINE B2 -15 183 3 3 1723 246 86 16 49 chr1 149270426 149270487 -47924945 + T-rich Low_complexity Low_complexity 1 59 0 3 1723 1281 176 35 15 chr1 149270685 149270944 -47924488 + Lx4A LINE L1 6792 7055 -3 3 1723 1428 71 0 0 chr1 149271350 149271548 -47923884 - L1Md_F2 LINE L1 0 6582 6385 3 1723 402 39 0 0 chr1 149271596 149271648 -47923784 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1723 627 39 0 0 chr1 149272203 149272281 -47923151 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1723 573 336 77 22 chr1 149272874 149273148 -47922284 + ORR1D2 LTR MaLR 39 327 -43 3 1723 378 0 0 0 chr1 149273982 149274024 -47921408 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1723 198 0 0 0 chr1 149274103 149274125 -47921307 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1723 995 113 0 0 chr1 149274370 149274511 -47920921 - B1_Mm SINE Alu 0 147 7 3 1723 364 273 43 80 chr1 149274395 149274558 -47920874 - MT2B LTR ERVL -323 278 122 3 1723 756 222 51 30 chr1 149274558 149274795 -47920637 - L1_Rod LINE L1 -781 5066 4825 3 1723 1440 269 108 0 chr1 149274813 149275296 -47920136 + Lx9 LINE L1 7106 7640 -4 3 1723 210 338 0 63 chr1 149275655 149275734 -47919698 - B4 SINE B4 -218 74 1 3 1723 186 128 0 0 chr1 149276077 149276116 -47919316 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1723 294 328 123 25 chr1 149276853 149276975 -47918457 - ID_B1 SINE B4 -10 214 81 3 1723 216 0 0 0 chr1 149277496 149277520 -47917912 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1723 1141 223 91 0 chr1 149277878 149278143 -47917289 + MTC LTR MaLR 19 307 -114 3 1723 3488 215 60 28 chr1 149278134 149278956 -47916476 - RMER13A LTR ERVK -12 848 1 4 1723 511 291 42 58 chr1 149278956 149279079 -47916353 + MTC LTR MaLR 303 421 0 4 1723 492 18 0 0 chr1 149279351 149279408 -47916024 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1723 327 293 121 8 chr1 149279667 149279791 -47915641 + RMER1C Other Other 2 139 -1203 4 1723 521 337 101 11 chr1 149279912 149280179 -47915253 - MLT1A0 LTR MaLR -72 293 3 4 1723 2155 227 58 108 chr1 149280679 149281641 -47913791 - L1_Rod LINE L1 -163 5684 4771 4 1723 579 29 0 0 chr1 149281644 149281713 -47913719 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 1723 421 271 50 0 chr1 149281720 149281860 -47913572 - L1_Rod LINE L1 -2280 3567 3421 4 1723 2782 66 3 13 chr1 149281945 149282327 -47913105 - L1Md_F2 LINE L1 0 6582 6205 4 1723 335 264 82 50 chr1 149282373 149282410 -47913022 - L1MC LINE L1 -2920 3226 3189 4 1723 304 21 20 40 chr1 149282410 149282460 -47912972 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1723 335 264 82 50 chr1 149282460 149282542 -47912890 - L1MC LINE L1 -2958 3188 3114 4 1723 1648 133 4 18 chr1 149282542 149282818 -47912614 - Lx3A LINE L1 -4 6977 6706 4 1723 335 264 82 50 chr1 149282818 149282916 -47912516 - L1MC LINE L1 -3033 3113 3002 4 1723 1929 258 129 20 chr1 149282962 149283677 -47911755 - L1_Rod LINE L1 -6342 830 38 4 1723 843 207 17 11 chr1 149283932 149283959 -47911473 - B2_Mm1t SINE B2 -10 183 155 4 1723 261 0 0 0 chr1 149283959 149283988 -47911444 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 4 1723 983 139 0 13 chr1 149283988 149284141 -47911291 - B2_Mm2 SINE B2 -43 152 2 4 1723 22 35 0 0 chr1 149284149 149284178 -47911254 + AT_rich Low_complexity Low_complexity 1 29 0 4 1723 3895 124 21 5 chr1 149284266 149284875 -47910557 + Lx LINE L1 6034 6652 -2 4 1723 29 47 0 0 chr1 149284910 149284953 -47910479 + AT_rich Low_complexity Low_complexity 1 43 0 4 1723 415 175 0 37 chr1 149284962 149285069 -47910363 - Lx LINE L1 -3 6651 6549 4 1723 22574 119 18 7 chr1 149285078 149286713 -47908719 - L1_Mus3 LINE L1 -10 6628 5002 4 1723 2458 79 50 0 chr1 149286713 149287056 -47908376 - L1_Mus1 LINE L1 0 6567 6208 4 1723 22574 137 14 14 chr1 149287056 149287461 -47907971 - L1_Mus3 LINE L1 -882 5001 4607 4 1723 1261 211 48 45 chr1 149287461 149287819 -47907613 - RLTR10D LTR ERVK 0 359 1 4 1723 22574 137 14 14 chr1 149287819 149290297 -47905135 - L1_Mus3 LINE L1 -1277 4606 2091 4 215 5630 127 18 7 chr1 149290807 149291710 -47903722 - Lx LINE L1 0 6654 5742 4 1724 378 42 0 0 chr1 149291816 149291864 -47903568 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1724 294 29 0 0 chr1 149291885 149291920 -47903512 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 1724 292 259 106 0 chr1 149292359 149292444 -47902988 - MLT1A LTR MaLR -280 94 1 4 1724 185 94 31 0 chr1 149292691 149292723 -47902709 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1724 277 248 76 46 chr1 149293396 149293527 -47901905 + MER3 DNA MER1_type 50 184 -25 4 1724 274 313 96 68 chr1 149293871 149294121 -47901311 + MIRb SINE MIR 9 265 -3 4 1724 23 54 0 0 chr1 149295695 149295732 -47899700 + AT_rich Low_complexity Low_complexity 1 37 0 4 1724 418 332 172 31 chr1 149295810 149296065 -47899367 - B4A SINE B4 -1 291 1 4 1724 23 54 0 0 chr1 149296073 149296110 -47899322 + AT_rich Low_complexity Low_complexity 1 37 0 4 1724 7083 66 15 8 chr1 149296688 149297637 -47897795 + L1Md_F2 LINE L1 5628 6582 0 4 1724 23 33 0 0 chr1 149298332 149298362 -47897070 + AT_rich Low_complexity Low_complexity 1 30 0 4 1724 29 60 0 0 chr1 149298406 149298456 -47896976 + AT_rich Low_complexity Low_complexity 1 50 0 4 1724 198 143 0 0 chr1 149298475 149298510 -47896922 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1724 300 335 66 71 chr1 149298744 149298956 -47896476 + MLT1F-int LTR MaLR 1108 1318 -171 4 1724 25 0 0 0 chr1 149299201 149299226 -47896206 + AT_rich Low_complexity Low_complexity 1 25 0 4 1724 465 19 0 0 chr1 149299271 149299325 -47896107 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 4 1724 840 136 21 0 chr1 149299325 149299465 -47895967 - B2_Mm2 SINE B2 -38 157 15 4 1724 21 0 0 0 chr1 149300075 149300096 -47895336 + AT_rich Low_complexity Low_complexity 1 21 0 4 1724 324 0 0 0 chr1 149301103 149301139 -47894293 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1724 860 191 11 5 chr1 149301139 149301323 -47894109 - Lx3A LINE L1 -15 6966 6782 4 1724 251 293 17 17 chr1 149301535 149301653 -47893779 + (CATATA)n Simple_repeat Simple_repeat 3 120 0 4 1724 372 59 0 0 chr1 149302435 149302486 -47892946 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1724 4304 143 39 19 chr1 149302943 149303294 -47892138 - RMER17D2 LTR ERVK 0 809 441 4 1724 270 0 0 0 chr1 149303294 149303324 -47892108 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1724 4304 143 39 19 chr1 149303324 149303765 -47891667 - RMER17D2 LTR ERVK -369 440 1 4 1724 1707 174 31 0 chr1 149303846 149304134 -47891298 + ORR1A2 LTR MaLR 31 327 0 4 1724 975 222 5 11 chr1 149304134 149304319 -47891113 - RLTR20B2 LTR ERVK -375 185 2 4 1724 23 0 0 0 chr1 149305999 149306022 -47889410 + AT_rich Low_complexity Low_complexity 1 23 0 4 1724 1176 298 63 48 chr1 149306027 149306648 -47888784 + Lx9 LINE L1 6980 7609 -35 4 1724 704 192 23 0 chr1 149306667 149306797 -47888635 + ORR1B1 LTR MaLR 3 135 -259 4 1724 857 239 144 130 chr1 149306822 149306911 -47888521 + RLTR19-int LTR ERVK 3600 3695 -2442 4 1724 468 0 0 0 chr1 149306911 149306963 -47888469 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1724 857 239 144 130 chr1 149306963 149307632 -47887800 + RLTR19-int LTR ERVK 3696 4368 -1769 4 1724 309 143 0 0 chr1 149309182 149309238 -47886194 + L1_Mus2 LINE L1 6510 6565 -1 4 1724 27 0 0 0 chr1 149309270 149309297 -47886135 + AT_rich Low_complexity Low_complexity 1 27 0 4 1724 307 306 8 76 chr1 149309421 149309445 -47885987 - B1_Mus1 SINE Alu -13 135 119 4 1724 1113 246 50 22 chr1 149309445 149309807 -47885625 + ORR1D1 LTR MaLR 3 374 0 4 1724 414 321 9 0 chr1 149309807 149309913 -47885519 - B1F SINE Alu -30 119 13 4 1724 1371 283 94 9 chr1 149309991 149310397 -47885035 + Lx8 LINE L1 6792 7237 -236 4 1724 225 0 0 0 chr1 149310397 149310422 -47885010 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1724 1371 283 94 9 chr1 149310422 149310461 -47884971 + Lx8 LINE L1 7238 7275 -198 4 1724 441 0 0 0 chr1 149310467 149310516 -47884916 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1724 194 80 59 20 chr1 149310598 149310649 -47884783 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1724 312 241 76 54 chr1 149310706 149310798 -47884634 - RLTR23 LTR ERV1 0 430 337 4 1724 207 0 0 0 chr1 149310938 149310961 -47884471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1724 279 0 0 0 chr1 149310970 149311001 -47884431 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 4 1724 3308 110 20 0 chr1 149311001 149311490 -47883942 - Lx3_Mus LINE L1 -9 7000 6502 4 1724 2400 110 0 6 chr1 149311490 149311837 -47883595 + Lx3_Mus LINE L1 6187 6531 -478 4 1724 467 257 19 71 chr1 149311882 149312037 -47883395 - RLTR23 LTR ERV1 -276 154 8 4 1724 225 276 39 26 chr1 149312101 149312179 -47883253 - RLTR19A LTR ERVK -80 416 338 4 1724 351 0 0 0 chr1 149312205 149312244 -47883188 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1724 529 83 24 0 chr1 149312444 149312528 -47882904 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 1724 270 0 0 0 chr1 149312577 149312607 -47882825 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1724 585 105 0 0 chr1 149312609 149312695 -47882737 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 1724 24 32 0 0 chr1 149312714 149312745 -47882687 + AT_rich Low_complexity Low_complexity 1 31 0 4 1724 345 154 0 44 chr1 149312932 149313000 -47882432 - Lx3_Mus LINE L1 -528 6481 6417 4 1724 8957 14 3 0 chr1 149313000 149314009 -47881423 - MERVL-int LTR ERVL -3472 2013 1002 4 1724 360 64 0 0 chr1 149314168 149314215 -47881217 + (CACG)n Simple_repeat Simple_repeat 2 48 0 4 1724 24 0 0 0 chr1 149315754 149315778 -47879654 + AT_rich Low_complexity Low_complexity 1 24 0 4 1724 28 86 0 0 chr1 149316238 149316308 -47879124 + AT_rich Low_complexity Low_complexity 1 70 0 4 1724 23 0 0 0 chr1 149316834 149316857 -47878575 + AT_rich Low_complexity Low_complexity 1 23 0 4 1724 3864 123 82 0 chr1 149316858 149317477 -47877955 - L1_Mus4 LINE L1 -1 6635 5966 4 1724 23 68 0 0 chr1 149317572 149317616 -47877816 + AT_rich Low_complexity Low_complexity 1 44 0 4 1724 23 33 0 0 chr1 149318970 149319000 -47876432 + AT_rich Low_complexity Low_complexity 1 30 0 4 1724 23 0 0 0 chr1 149319855 149319878 -47875554 + AT_rich Low_complexity Low_complexity 1 23 0 4 1724 25 0 0 0 chr1 149320693 149320718 -47874714 + AT_rich Low_complexity Low_complexity 1 25 0 4 1724 3533 62 7 0 chr1 149321319 149321774 -47873658 - L1_Mus1 LINE L1 -523 6044 5587 4 1724 1644 48 0 0 chr1 149321791 149322179 -47873253 + L1_Mus1 LINE L1 6360 6567 0 4 1724 218 246 14 14 chr1 149323590 149323664 -47871768 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1724 21 71 0 0 chr1 149324358 149324400 -47871032 + AT_rich Low_complexity Low_complexity 1 42 0 4 1724 25 75 0 0 chr1 149324436 149324489 -47870943 + AT_rich Low_complexity Low_complexity 1 53 0 4 1724 296 281 72 35 chr1 149324594 149324768 -47870664 + B3A SINE B2 2 191 -4 4 1724 30 27 0 0 chr1 149325326 149325363 -47870069 + AT_rich Low_complexity Low_complexity 1 37 0 4 1724 2231 104 12 9 chr1 149326368 149326697 -47868735 + L1_Mur1 LINE L1 4907 5236 -650 4 1724 1396 269 75 10 chr1 149326671 149327084 -47868348 - Lx8 LINE L1 -225 7248 6809 4 1724 369 340 43 25 chr1 149327123 149327286 -47868146 - MLT1A0 LTR MaLR -152 213 48 4 1724 942 167 33 38 chr1 149327286 149327498 -47867934 + Lx9 LINE L1 7298 7508 -136 4 1724 226 102 39 39 chr1 149327500 149327551 -47867881 + (CATA)n Simple_repeat Simple_repeat 4 54 0 4 1724 330 108 138 64 chr1 149327553 149327662 -47867770 + Lx9 LINE L1 7486 7602 -42 4 1724 352 288 46 142 chr1 149327825 149328081 -47867351 - L1MC5 LINE L1 -908 7053 6835 4 1724 571 241 80 48 chr1 149328081 149328268 -47867164 - B3A SINE B2 -5 193 1 4 1724 352 288 46 142 chr1 149328268 149328469 -47866963 - L1MC5 LINE L1 -1127 6834 6640 4 1724 533 302 0 24 chr1 149328641 149328807 -47866625 - RSINE1 SINE B4 -2 163 2 4 1724 193 204 53 26 chr1 149330081 149330232 -47865200 + (AATAG)n Simple_repeat Simple_repeat 3 157 0 4 1724 378 206 56 0 chr1 149330334 149330494 -47864938 + (AATAG)n Simple_repeat Simple_repeat 5 173 0 4 1724 936 288 15 19 chr1 149331134 149331403 -47864029 - B4A SINE B4 -23 269 2 5 1724 834 11 0 0 chr1 149331663 149331758 -47863674 + (TTC)n Simple_repeat Simple_repeat 2 96 0 5 1724 7121 77 24 3 chr1 149331758 149332703 -47862729 - L1_Mus4 LINE L1 -15 6621 5655 5 1724 2102 143 3 3 chr1 149332691 149333041 -47862391 + L1_Mur2 LINE L1 4194 4543 -1334 5 1724 569 292 12 6 chr1 149333216 149333378 -47862054 + RSINE1 SINE B4 3 165 0 5 1724 617 58 39 0 chr1 149333599 149333702 -47861730 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1724 517 310 186 12 chr1 149333712 149333960 -47861472 - B4 SINE B4 0 292 2 5 1724 3917 64 10 11 chr1 149334346 149334869 -47860563 - L1Md_F2 LINE L1 0 6582 6061 5 1724 28 0 0 0 chr1 149334927 149334955 -47860477 + AT_rich Low_complexity Low_complexity 1 28 0 5 1724 5761 42 7 0 chr1 149335059 149335775 -47859657 - L1Md_F3 LINE L1 -14 6570 5850 5 1724 737 168 8 0 chr1 149335931 149336056 -47859376 - B3 SINE B2 -12 204 79 5 1724 594 148 0 0 chr1 149336056 149336157 -47859275 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 1724 232 311 15 15 chr1 149336574 149336711 -47858721 + (CATA)n Simple_repeat Simple_repeat 4 140 0 5 1724 302 329 6 6 chr1 149336659 149336821 -47858611 + (CA)n Simple_repeat Simple_repeat 1 162 0 5 1724 444 305 92 92 chr1 149337881 149338098 -47857334 - B4A SINE B4 -75 217 1 5 1724 197 324 26 26 chr1 149338466 149338542 -47856890 - L2b LINE L2 -154 3221 3146 5 1724 1377 67 0 0 chr1 149338803 149339347 -47856085 + (TG)n Simple_repeat Simple_repeat 1 544 0 5 1724 317 320 0 0 chr1 149339355 149339433 -47855999 - B4A SINE B4 -209 83 6 5 1724 2744 194 90 57 chr1 149340066 149340713 -47854719 + RMER1B Other Other 399 1066 0 5 1724 661 276 79 18 chr1 149340761 149340990 -47854442 + B4 SINE B4 50 292 0 5 1724 423 0 0 0 chr1 149341011 149341058 -47854374 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1724 246 95 0 0 chr1 149341205 149341247 -47854185 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 5 1724 447 19 0 0 chr1 149342117 149342169 -47853263 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1724 479 283 215 37 chr1 149342188 149342434 -47852998 - B4A SINE B4 -1 291 2 5 1724 652 305 115 15 chr1 149342743 149343003 -47852429 + B4A SINE B4 3 288 -4 5 1724 1241 251 55 39 chr1 149343457 149343821 -47851611 - ORR1D2 LTR MaLR 0 370 1 5 1724 35345 35 0 0 chr1 149344085 149349490 -47845942 + L1Md_T LINE L1 88 5589 -297 5 1724 9005 4 0 0 chr1 149349490 149350486 -47844946 + L1Md_T LINE L1 5590 6585 0 5 1724 252 0 0 0 chr1 149350942 149350970 -47844462 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 5 1724 197 118 0 29 chr1 149351041 149351076 -47844356 - L3 LINE CR1 -3334 1155 1122 5 1724 197 281 128 43 chr1 149351277 149351418 -47844014 + MIRm SINE MIR 30 182 -86 5 1724 1098 64 14 0 chr1 149351516 149351656 -47843776 + B1_Mm SINE Alu 2 143 -4 5 1724 310 293 0 35 chr1 149351782 149351867 -47843565 - ID4_ SINE ID 0 83 2 5 1724 252 233 12 88 chr1 149352387 149352467 -47842965 - B3 SINE B2 -141 75 2 5 1724 747 245 16 10 chr1 149353551 149353745 -47841687 + URR1A DNA MER1_type 29 223 -3 5 1724 25 0 0 0 chr1 149354097 149354122 -47841310 + AT_rich Low_complexity Low_complexity 1 25 0 5 1724 480 301 25 37 chr1 149354194 149354356 -47841076 - RSINE1 SINE B4 -4 161 2 5 1724 207 0 0 0 chr1 149354430 149354453 -47840979 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1724 6873 138 5 4 chr1 149354453 149355615 -47839817 + Lx LINE L1 5485 6647 -7 5 1724 242 214 13 67 chr1 149355825 149355864 -47839568 + polypurine Low_complexity Low_complexity 3 38 0 5 1724 195 69 0 0 chr1 149355864 149355893 -47839539 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1724 242 214 13 67 chr1 149355893 149355928 -47839504 + polypurine Low_complexity Low_complexity 39 73 0 5 1724 1737 236 47 40 chr1 149355929 149356506 -47838926 + Lx2B LINE L1 6021 6601 -399 5 1724 2124 243 32 63 chr1 149356495 149357079 -47838353 + Lx5 LINE L1 6478 7043 -7 5 1724 659 309 25 33 chr1 149357247 149357491 -47837941 + B4A SINE B4 43 284 -8 5 1724 3505 82 4 18 chr1 149357742 149358236 -47837196 + L1_Mus2 LINE L1 6079 6565 -1 5 1724 23 68 0 0 chr1 149358238 149358282 -47837150 + AT_rich Low_complexity Low_complexity 1 44 0 5 1724 351 324 13 27 chr1 149358425 149358574 -47836858 + B1_Mur1 SINE Alu 3 149 0 5 1724 8969 179 13 8 chr1 149358615 149360535 -47834897 - Lx LINE L1 -1 6653 4734 5 1724 230 0 33 0 chr1 149360535 149360565 -47834867 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1724 8969 182 16 9 chr1 149360565 149361130 -47834302 - Lx LINE L1 -1150 4733 4149 5 1724 488 204 0 53 chr1 149361132 149361246 -47834186 + B1_Mur3 SINE Alu 41 148 -1 5 1724 261 197 0 0 chr1 149361247 149361318 -47834114 + A-rich Low_complexity Low_complexity 1 71 0 5 1724 1542 244 49 69 chr1 149361452 149361901 -47833531 + RLTR20A LTR ERVK 1 440 -101 5 1724 201 147 0 0 chr1 149362486 149362520 -47832912 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 5 1724 238 299 62 45 chr1 149362520 149362632 -47832800 + RLTR20A LTR ERVK 438 551 0 5 1724 395 100 14 0 chr1 149363259 149363329 -47832103 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1724 316 350 25 8 chr1 149363375 149363493 -47831939 - RSINE1 SINE B4 -30 135 16 5 1724 25 31 0 0 chr1 149363523 149363555 -47831877 + AT_rich Low_complexity Low_complexity 1 32 0 5 1724 435 244 140 10 chr1 149363555 149363762 -47831670 - Lx9 LINE L1 -21 7623 7390 5 1724 183 42 0 0 chr1 149363798 149363822 -47831610 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1724 602 315 80 11 chr1 149364084 149364534 -47830898 + L1MC3 LINE L1 5847 6327 -1458 5 1724 594 56 0 6 chr1 149364742 149364827 -47830605 - L1_Mus4 LINE L1 -1695 5778 5697 5 1724 3343 58 25 0 chr1 149364827 149365261 -47830171 + L1Md_F3 LINE L1 6126 6570 -14 5 1724 1148 61 0 20 chr1 149365303 149365454 -47829978 + B1_Mus1 SINE Alu 1 148 0 5 1724 294 176 0 0 chr1 149365454 149365539 -47829893 + A-rich Low_complexity Low_complexity 5 89 0 5 1724 302 331 40 84 chr1 149365606 149365880 -47829552 + L1MC3 LINE L1 6953 7214 -571 5 1724 281 344 44 0 chr1 149365983 149366073 -47829359 + RSINE1 SINE B4 11 104 -61 5 1724 557 303 56 27 chr1 149366079 149366354 -47829078 - RMER1B Other Other -531 535 205 5 1724 343 229 23 57 chr1 149366372 149366460 -47828972 - RMER1A Other Other -945 85 1 5 1724 330 26 0 0 chr1 149366543 149366582 -47828850 + (CATA)n Simple_repeat Simple_repeat 2 40 0 5 1724 435 384 6 59 chr1 149366682 149366851 -47828581 - RSINE1 SINE B4 -4 161 2 5 1724 291 114 0 0 chr1 149367730 149367774 -47827658 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1724 23 54 0 0 chr1 149368065 149368102 -47827330 + AT_rich Low_complexity Low_complexity 1 37 0 5 1724 1132 88 0 0 chr1 149368102 149368249 -47827183 + B1_Mm SINE Alu 1 147 0 5 1724 189 0 0 0 chr1 149368252 149368273 -47827159 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 1724 447 327 59 16 chr1 149369773 149370028 -47825404 - Lx8 LINE L1 -1069 6404 6139 5 1724 221 306 95 85 chr1 149370032 149370221 -47825211 - B2_Mm2 SINE B2 -4 191 1 5 1724 244 309 10 21 chr1 149371441 149371537 -47823895 - Lx9 LINE L1 -1660 5984 5890 5 1724 691 237 105 5 chr1 149371513 149371704 -47823728 - Lx9 LINE L1 -99 5748 5539 5 1724 1667 172 57 24 chr1 149371759 149372092 -47823340 - Lx3A LINE L1 -7 6974 6631 5 1724 7336 86 7 0 chr1 149372100 149373096 -47822336 - L1_Mus1 LINE L1 0 6567 5590 5 1724 6225 119 2 4 chr1 149373121 149374073 -47821359 + L1_Mm LINE L1 4537 5486 -397 5 1724 288 98 59 0 chr1 149374069 149374120 -47821312 - L1_Mus1 LINE L1 -382 5501 5448 5 1724 687 282 45 100 chr1 149374376 149374667 -47820765 - RLTR16 LTR ERVK -207 298 24 5 1724 180 111 0 0 chr1 149374684 149374711 -47820721 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1724 237 256 0 25 chr1 149374713 149374793 -47820639 - Lx9 LINE L1 -314 5533 5456 5 1724 198 0 0 0 chr1 149374810 149374832 -47820600 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1724 456 250 158 10 chr1 149374908 149375110 -47820322 + Lx9 LINE L1 6157 6388 -1256 5 1724 892 239 31 13 chr1 149375106 149375335 -47820097 + Lx9 LINE L1 7241 7473 -171 5 1724 28 48 0 0 chr1 149376636 149376678 -47818754 + AT_rich Low_complexity Low_complexity 1 42 0 5 1724 21 0 0 0 chr1 149376697 149376718 -47818714 + AT_rich Low_complexity Low_complexity 1 21 0 5 1724 210 80 39 39 chr1 149376949 149377001 -47818431 + (TTA)n Simple_repeat Simple_repeat 2 53 0 5 1724 29 0 0 0 chr1 149377657 149377686 -47817746 + AT_rich Low_complexity Low_complexity 1 29 0 5 1724 185 0 40 0 chr1 149377983 149378008 -47817424 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 5 1724 23 33 0 0 chr1 149378101 149378131 -47817301 + AT_rich Low_complexity Low_complexity 1 30 0 5 1724 1098 135 0 0 chr1 149378319 149378497 -47816935 + (TCC)n Simple_repeat Simple_repeat 2 179 0 5 1724 5883 171 66 6 chr1 149378497 149379611 -47815821 - Lx2B LINE L1 -12 6988 5808 5 1724 1994 162 78 12 chr1 149380575 149380825 -47814607 + RMER6-int LTR ERVK 1716 1965 -1212 5 1724 2753 151 11 2 chr1 149380825 149381291 -47814141 + Lx LINE L1 6183 6652 -2 5 1724 1994 162 78 12 chr1 149381291 149381440 -47813992 + RMER6-int LTR ERVK 1966 2141 -1036 5 1724 2225 183 51 19 chr1 149381429 149381897 -47813535 + RMER6-int LTR ERVK 2434 2916 -261 5 1724 507 56 0 0 chr1 149381900 149381971 -47813461 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1724 735 194 0 0 chr1 149381971 149382110 -47813322 + RMER6-int LTR ERVK 2974 3112 -65 5 1724 235 304 14 14 chr1 149383408 149383478 -47811954 - ID4 SINE ID -10 73 4 5 1724 31 26 0 0 chr1 149384055 149384093 -47811339 + AT_rich Low_complexity Low_complexity 1 38 0 5 1724 28 48 0 0 chr1 149384589 149384631 -47810801 + AT_rich Low_complexity Low_complexity 1 42 0 5 1724 678 292 53 114 chr1 149384951 149385345 -47810087 + ORR1D2 LTR MaLR 1 370 0 5 1724 396 0 0 0 chr1 149385470 149385514 -47809918 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1724 324 0 0 0 chr1 149385514 149385549 -47809883 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1724 424 296 47 42 chr1 149385579 149385794 -47809638 - Lx8 LINE L1 -564 6909 6694 5 1724 963 215 49 18 chr1 149385919 149386141 -47809291 - RMER6D LTR ERVK 0 720 492 6 1724 2768 181 51 13 chr1 149386141 149386691 -47808741 + RLTR25B LTR ERVK 1 571 -457 6 1724 26 30 0 0 chr1 149387006 149387039 -47808393 + AT_rich Low_complexity Low_complexity 1 33 0 6 1724 417 156 26 13 chr1 149387545 149387623 -47807809 - RMER6D LTR ERVK -641 79 1 6 1724 413 81 16 0 chr1 149388169 149388231 -47807201 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1724 27 0 0 0 chr1 149388715 149388742 -47806690 + AT_rich Low_complexity Low_complexity 1 27 0 6 1724 22 0 0 0 chr1 149388968 149388990 -47806442 + AT_rich Low_complexity Low_complexity 1 22 0 6 1724 502 89 0 15 chr1 149389210 149389278 -47806154 - Lx3_Mus LINE L1 -610 6399 6333 6 1724 203 133 21 43 chr1 149390067 149390114 -47805318 + (CAA)n Simple_repeat Simple_repeat 2 47 0 6 1724 14778 125 6 3 chr1 149390519 149392852 -47802580 + L1Md_F2 LINE L1 3244 5585 -298 6 1724 7126 87 10 3 chr1 149392853 149393828 -47801604 + L1Md_F2 LINE L1 5587 6568 -14 6 1724 4309 128 45 11 chr1 149393997 149394711 -47800721 - L1_Mus3 LINE L1 0 6638 5901 6 1724 293 131 100 14 chr1 149395044 149395114 -47800318 + L1_Mus3 LINE L1 6556 6631 -7 6 1724 181 283 75 75 chr1 149395843 149395950 -47799482 - L2 LINE L2 -904 2515 2409 6 1724 596 148 0 9 chr1 149396275 149396384 -47799048 + (TA)n Simple_repeat Simple_repeat 2 109 0 6 1724 1241 95 34 0 chr1 149396571 149396750 -47798682 + B2_Mm2 SINE B2 4 188 -7 6 1724 439 66 26 0 chr1 149397443 149397519 -47797913 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1724 1263 147 2 16 chr1 149398652 149398879 -47796553 - L1_Mur2 LINE L1 -2126 3721 3496 6 1724 1017 178 66 4 chr1 149398883 149399109 -47796323 + Lx5 LINE L1 4454 4693 -1184 6 1724 2754 182 29 150 chr1 149399109 149399289 -47796143 + Lx5 LINE L1 5147 5328 -549 6 1724 3350 75 0 0 chr1 149399289 149399731 -47795701 - L1Md_T LINE L1 0 6582 6141 6 1724 5633 213 42 77 chr1 149399731 149401500 -47793932 + Lx5 LINE L1 5329 7032 -18 6 1724 189 0 0 0 chr1 149401504 149401525 -47793907 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 6 1724 1075 70 0 14 chr1 149402016 149402160 -47793272 + B1_Mm SINE Alu 3 144 -3 6 1724 855 64 21 0 chr1 149402160 149402300 -47793132 + (CAAAA)n Simple_repeat Simple_repeat 2 144 0 6 1724 24 32 0 0 chr1 149402771 149402802 -47792630 + AT_rich Low_complexity Low_complexity 1 31 0 6 1724 26 0 0 0 chr1 149402841 149402867 -47792565 + AT_rich Low_complexity Low_complexity 1 26 0 6 1724 183 42 0 0 chr1 149403390 149403414 -47792018 + (TAA)n Simple_repeat Simple_repeat 3 26 0 6 1724 7584 70 3 2 chr1 149404596 149405597 -47789835 + L1Md_F2 LINE L1 5587 6561 -21 6 1724 278 0 54 0 chr1 149405597 149405634 -47789798 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 6 1724 1335 36 0 0 chr1 149405634 149405800 -47789632 - B2_Mm1t SINE B2 -26 167 2 6 1724 28 71 0 0 chr1 149405807 149405863 -47789569 + AT_rich Low_complexity Low_complexity 1 56 0 6 1724 375 226 0 21 chr1 149406018 149406074 -47789358 + B2_Mm2 SINE B2 5 60 -135 6 1724 4667 63 19 13 chr1 149406074 149406292 -47789140 + L1Md_F3 LINE L1 5957 6174 -410 6 1724 3399 10 10 0 chr1 149406292 149406684 -47788748 - MTA_Mm LTR MaLR 0 396 1 6 1724 9395 16 8 0 chr1 149406684 149407773 -47787659 - MTA_Mm-int LTR MaLR 0 1098 1 6 1724 3399 10 10 0 chr1 149407773 149408165 -47787267 - MTA_Mm LTR MaLR 0 396 1 6 1724 4667 63 19 13 chr1 149408165 149408568 -47786864 + L1Md_F3 LINE L1 6175 6582 -2 6 1724 375 226 0 21 chr1 149408568 149408606 -47786826 + B2_Mm2 SINE B2 61 97 -98 6 1724 441 0 0 0 chr1 149410087 149410136 -47785296 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1724 483 18 0 0 chr1 149410136 149410191 -47785241 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1724 969 226 56 33 chr1 149410252 149410578 -47784854 + RMER6B LTR ERVK 1 380 -81 6 1724 3240 151 80 5 chr1 149410658 149411407 -47784025 - Lx2 LINE L1 0 7000 6107 6 1724 344 225 89 9 chr1 149411867 149411979 -47783453 - Lx9 LINE L1 -7 7637 7517 6 1724 657 93 14 28 chr1 149411982 149412125 -47783307 + (TCTCTG)n Simple_repeat Simple_repeat 2 142 0 6 1724 507 33 0 0 chr1 149412126 149412187 -47783245 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1724 1481 243 80 20 chr1 149412187 149412640 -47782792 - Lx9 LINE L1 -182 7462 6983 6 1724 30 0 0 0 chr1 149412646 149412676 -47782756 + AT_rich Low_complexity Low_complexity 1 30 0 6 1724 1690 67 0 29 chr1 149412721 149412966 -47782466 - L1_Mus1 LINE L1 -3 6564 6327 6 1724 1022 197 0 136 chr1 149413149 149413407 -47782025 - MTC LTR MaLR 0 421 199 6 1724 937 133 0 0 chr1 149413411 149413546 -47781886 - B1_Mm SINE Alu 0 147 13 6 1724 725 216 94 22 chr1 149413547 149413727 -47781705 - MTC LTR MaLR -228 193 1 6 1724 42 65 0 0 chr1 149414029 149414106 -47781326 + AT_rich Low_complexity Low_complexity 1 77 0 6 1724 287 203 0 72 chr1 149414110 149414179 -47781253 - RMER15-int LTR ERVL -66 4933 4870 6 1724 21 36 0 0 chr1 149414322 149414350 -47781082 + AT_rich Low_complexity Low_complexity 1 28 0 6 1724 21 0 0 0 chr1 149414483 149414504 -47780928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1724 690 65 0 0 chr1 149414634 149414726 -47780706 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 6 1724 719 91 0 20 chr1 149414726 149414820 -47780612 - B1_Mus2 SINE Alu -12 135 42 6 1724 225 188 112 56 chr1 149414757 149414864 -47780568 - RLTR25B LTR ERVK -519 509 397 6 1724 207 133 0 0 chr1 149414864 149414909 -47780523 + (TCTCCC)n Simple_repeat Simple_repeat 6 50 0 6 1724 340 37 18 18 chr1 149416253 149416308 -47779124 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1724 1043 80 7 0 chr1 149416308 149416445 -47778987 - B1_Mus1 SINE Alu -8 140 3 6 1724 204 297 0 0 chr1 149417084 149417148 -47778284 + CT-rich Low_complexity Low_complexity 3 66 0 6 1724 228 67 0 0 chr1 149417208 149417238 -47778194 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 6 1724 229 286 31 31 chr1 149417303 149417368 -47778064 + Lx6 LINE L1 7133 7197 -263 6 1724 641 197 35 143 chr1 149417368 149417589 -47777843 - ORR1A4 LTR MaLR -206 164 3 6 1724 317 304 0 65 chr1 149417606 149417729 -47777703 + Lx6 LINE L1 7210 7324 -136 6 1724 238 270 40 0 chr1 149417774 149417874 -47777558 + Lx6 LINE L1 7330 7433 -27 6 1724 962 246 22 32 chr1 149417992 149418284 -47777148 - MTC LTR MaLR -155 264 6 6 1724 434 280 48 26 chr1 149418312 149418522 -47776910 - L1MC3 LINE L1 -259 6074 5858 6 1724 276 228 16 54 chr1 149418526 149418606 -47776826 - ORR1B1 LTR MaLR -304 90 6 6 1724 411 224 0 0 chr1 149418669 149418776 -47776656 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1724 1373 214 11 82 chr1 149418933 149419285 -47776147 - ORR1A4 LTR MaLR 0 329 3 6 1724 183 42 0 0 chr1 149419960 149419984 -47775448 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1724 4308 58 34 0 chr1 149420442 149421137 -47774295 - L1_Mus1 LINE L1 -579 5988 5275 6 1724 4580 77 2 0 chr1 149421137 149421732 -47773700 + L1_Mus1 LINE L1 5972 6567 0 6 1724 21 36 0 0 chr1 149421795 149421823 -47773609 + AT_rich Low_complexity Low_complexity 1 28 0 6 1724 342 183 0 0 chr1 149421833 149421904 -47773528 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1725 324 158 0 0 chr1 149423394 149423451 -47771981 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1725 213 48 45 45 chr1 149423539 149423583 -47771849 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6 1725 981 117 7 0 chr1 149423584 149423729 -47771703 - B1_Mus1 SINE Alu -2 146 1 6 1725 289 245 160 87 chr1 149424342 149424430 -47771002 + Lx7 LINE L1 7476 7555 -141 6 1725 4762 61 0 2 chr1 149424430 149425036 -47770396 - L1Md_F2 LINE L1 -12 6570 5966 6 1725 289 245 160 87 chr1 149425036 149425153 -47770279 + Lx7 LINE L1 7556 7696 0 6 1725 297 0 0 0 chr1 149425315 149425348 -47770084 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1725 537 55 0 0 chr1 149425348 149425420 -47770012 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 1725 334 350 119 43 chr1 149425766 149426094 -47769338 - LTR41 LTR ERVL -397 371 19 6 1725 21 0 0 0 chr1 149426183 149426204 -47769228 + AT_rich Low_complexity Low_complexity 1 21 0 6 1725 394 55 0 69 chr1 149426227 149426238 -47769194 + L1Md_T LINE L1 5830 5837 -46 6 1725 575 12 38 0 chr1 149426238 149426318 -47769114 - L1Md_T LINE L1 -2 6580 6498 6 1725 1517 17 0 0 chr1 149426318 149426494 -47768938 + L1Md_T LINE L1 5838 6013 -569 6 1725 466 354 26 62 chr1 149426746 149427050 -47768382 + ORR1E LTR MaLR 1 293 -66 6 1725 1302 147 25 17 chr1 149427066 149427302 -47768130 - RMER6C LTR ERVK -9 681 444 6 1725 258 32 0 0 chr1 149427303 149427334 -47768098 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1725 310 195 273 11 chr1 149427412 149427500 -47767932 + RMER6D LTR ERVK 1 111 -609 6 1725 363 404 38 0 chr1 149427570 149427753 -47767679 - MER44D DNA MER2_type -515 190 1 6 1725 24 0 0 0 chr1 149428158 149428182 -47767250 + AT_rich Low_complexity Low_complexity 1 24 0 6 1725 4277 82 48 5 chr1 149428528 149429130 -47766302 - L1Md_F2 LINE L1 -7 6575 5948 6 1725 21 0 0 0 chr1 149430107 149430128 -47765304 + AT_rich Low_complexity Low_complexity 1 21 0 6 1725 495 0 0 0 chr1 149430140 149430195 -47765237 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1725 1317 266 27 5 chr1 149430195 149430565 -47764867 + Lx9 LINE L1 7086 7463 -181 6 1725 241 367 67 0 chr1 149430577 149430667 -47764765 - RMER12 LTR ERVK -478 844 749 6 1725 387 187 11 0 chr1 149430667 149430758 -47764674 + Lx9 LINE L1 7543 7634 -10 6 1725 25 0 0 0 chr1 149430982 149431007 -47764425 + AT_rich Low_complexity Low_complexity 1 25 0 6 1725 189 74 0 0 chr1 149431269 149431296 -47764136 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1725 23 0 0 0 chr1 149431771 149431794 -47763638 + AT_rich Low_complexity Low_complexity 1 23 0 6 1725 25 0 0 0 chr1 149432578 149432603 -47762829 + AT_rich Low_complexity Low_complexity 1 25 0 6 1725 228 137 0 0 chr1 149433041 149433092 -47762340 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 1725 2347 150 120 39 chr1 149433106 149433597 -47761835 + RMER16 LTR ERVK 1 531 -2 6 1725 498 308 15 0 chr1 149433678 149433808 -47761624 + B1F SINE Alu 12 143 -6 6 1725 1085 95 0 0 chr1 149433920 149434067 -47761365 - B1_Mm SINE Alu 0 147 1 6 1725 3107 66 0 0 chr1 149434528 149434921 -47760511 + L1_Mus1 LINE L1 6175 6567 0 6 1725 227 157 20 0 chr1 149435325 149435376 -47760056 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1725 2945 82 7 28 chr1 149435940 149436368 -47759064 - L1Md_F2 LINE L1 -12 6570 6152 6 1725 1352 79 0 0 chr1 149436368 149436557 -47758875 + L1_Mm LINE L1 4284 4472 -1411 6 1725 279 0 0 0 chr1 149436649 149436680 -47758752 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6 1725 324 262 75 0 chr1 149436737 149436844 -47758588 + Lx7 LINE L1 7207 7321 -375 7 1725 34 65 0 0 chr1 149437026 149437088 -47758344 + AT_rich Low_complexity Low_complexity 1 62 0 7 1725 456 301 83 7 chr1 149437151 149437295 -47758137 + ID_B1 SINE B4 5 159 -65 7 1725 468 0 0 0 chr1 149438110 149438162 -47757270 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1725 386 302 38 15 chr1 149438486 149438617 -47756815 + MTEa LTR MaLR 216 349 -30 7 1725 2891 64 13 0 chr1 149438646 149439038 -47756394 - L1Md_F2 LINE L1 -1 6581 6185 7 1725 9893 11 1 0 chr1 149439048 149440178 -47755254 + L1Md_F2 LINE L1 214 1344 -5380 7 1725 17844 11 0 14 chr1 149442664 149444420 -47751012 + L1Md_F2 LINE L1 3831 5586 -297 7 1725 9011 3 0 0 chr1 149444420 149445416 -47750016 + L1Md_A LINE L1 5587 6582 0 7 1725 17844 22 0 7 chr1 149445416 149446044 -47749388 + L1Md_F2 LINE L1 5587 6187 -395 7 1725 21 71 0 0 chr1 149446446 149446488 -47748944 + AT_rich Low_complexity Low_complexity 1 42 0 7 1725 558 93 0 0 chr1 149447108 149447194 -47748238 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1725 214 296 14 14 chr1 149448951 149449023 -47746409 + GA-rich Low_complexity Low_complexity 1 72 0 7 1725 476 348 0 0 chr1 149449308 149449423 -47746009 + RSINE1 SINE B4 27 141 -24 7 1725 379 374 75 12 chr1 149449844 149450017 -47745415 + LTR33C LTR ERVL 342 525 -104 7 1725 754 241 108 0 chr1 149450046 149450249 -47745183 - URR1A DNA MER1_type -1 225 1 7 1725 4470 44 1 0 chr1 149450565 149451109 -47744323 - L1Md_F2 LINE L1 -89 6493 5942 7 1725 765 107 0 0 chr1 149451186 149451317 -47744115 + (TC)n Simple_repeat Simple_repeat 2 132 0 7 1725 192 40 0 0 chr1 149451317 149451341 -47744091 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1725 234 0 0 0 chr1 149452748 149452774 -47742658 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1725 428 346 8 8 chr1 149452783 149452914 -47742518 - B3A SINE B2 -62 136 6 7 1725 349 256 24 0 chr1 149452957 149453039 -47742393 + B1F SINE Alu 66 149 0 7 1725 2784 80 36 3 chr1 149453730 149454117 -47741315 + MTB LTR MaLR 1 400 0 7 1725 1060 226 220 30 chr1 149454938 149455533 -47739899 + Lx4B LINE L1 6181 7054 -4 7 1725 861 294 146 24 chr1 149456732 149457067 -47738365 - MTD LTR MaLR -43 376 1 7 1725 21 36 0 0 chr1 149457138 149457166 -47738266 + AT_rich Low_complexity Low_complexity 1 28 0 7 1725 231 243 13 13 chr1 149457189 149457264 -47738168 + L1MA8 LINE L1 5865 5939 -352 7 1725 395 19 0 19 chr1 149457935 149457988 -47737444 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 7 1725 23 78 0 0 chr1 149458134 149458185 -47737247 + AT_rich Low_complexity Low_complexity 1 51 0 7 1725 513 32 0 0 chr1 149458194 149458257 -47737175 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1725 2042 138 6 0 chr1 149458343 149458668 -47736764 - ORR1A2 LTR MaLR 0 327 1 7 1725 1113 188 55 13 chr1 149458668 149458905 -47736527 - ORR1A2-int LTR MaLR 0 1963 1717 7 1725 2708 118 2 8 chr1 149458883 149459283 -47736149 - ORR1A2-int LTR MaLR -603 1360 963 7 1725 2635 163 0 36 chr1 149459355 149459852 -47735580 - Lx LINE L1 -5 6649 6171 7 1725 3599 192 106 14 chr1 149459897 149460794 -47734638 - ORR1A2-int LTR MaLR -984 979 1 7 1725 1883 172 3 15 chr1 149460794 149461125 -47734307 - ORR1A2 LTR MaLR 0 327 1 7 1725 224 311 0 0 chr1 149461128 149461189 -47734243 - B3A SINE B2 -136 62 2 7 1725 5723 137 44 5 chr1 149461339 149462303 -47733129 - Lx2A1 LINE L1 -4 7004 6004 7 1725 376 330 25 17 chr1 149462342 149462462 -47732970 + ID_B1 SINE B4 90 210 -14 7 1725 21 0 0 0 chr1 149463651 149463672 -47731760 + AT_rich Low_complexity Low_complexity 1 21 0 7 1725 457 290 21 28 chr1 149463677 149463819 -47731613 - B1F SINE Alu 0 149 9 7 1725 24 96 0 0 chr1 149464194 149464267 -47731165 + AT_rich Low_complexity Low_complexity 1 73 0 7 1725 23 0 0 0 chr1 149464353 149464376 -47731056 + AT_rich Low_complexity Low_complexity 1 23 0 7 1725 182 174 22 0 chr1 149464531 149464577 -47730855 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 7 1725 23 0 0 0 chr1 149464583 149464606 -47730826 + AT_rich Low_complexity Low_complexity 1 23 0 7 1725 29 0 0 0 chr1 149464657 149464686 -47730746 + AT_rich Low_complexity Low_complexity 1 29 0 7 1725 24 32 0 0 chr1 149464807 149464838 -47730594 + AT_rich Low_complexity Low_complexity 1 31 0 7 1725 1353 113 5 24 chr1 149465336 149465545 -47729887 - Lx LINE L1 -99 6555 6351 7 1725 24 0 0 0 chr1 149465850 149465874 -47729558 + AT_rich Low_complexity Low_complexity 1 24 0 7 1725 859 42 25 0 chr1 149466104 149466223 -47729209 + (CATATA)n Simple_repeat Simple_repeat 2 123 0 7 1725 21 82 0 0 chr1 149466654 149466703 -47728729 + AT_rich Low_complexity Low_complexity 1 49 0 7 1725 340 357 30 23 chr1 149466703 149466835 -47728597 - RSINE1 SINE B4 -8 157 25 7 1725 275 330 209 0 chr1 149468669 149468784 -47726648 + B1F2 SINE Alu 4 142 -7 7 1725 35 54 0 0 chr1 149468798 149468854 -47726578 + AT_rich Low_complexity Low_complexity 1 56 0 7 1725 242 237 0 17 chr1 149468931 149468991 -47726441 + A-rich Low_complexity Low_complexity 2 60 0 7 1725 1244 119 6 0 chr1 149469213 149469389 -47726043 - B2_Mm2 SINE B2 -17 178 2 7 1725 237 65 0 0 chr1 149470048 149470079 -47725353 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 7 1725 1172 292 54 23 chr1 149470087 149470385 -47725047 - Lx6 LINE L1 -7 7453 7164 7 1725 3589 45 14 5 chr1 149470385 149470831 -47724601 + L1Md_F2 LINE L1 6131 6580 -2 7 1725 1172 292 54 23 chr1 149470831 149470886 -47724546 - Lx6 LINE L1 -297 7163 7090 7 1725 2214 268 29 41 chr1 149470926 149471614 -47723818 - Lx6 LINE L1 -947 6513 5834 7 1725 34336 67 2 30 chr1 149471618 149477831 -47717601 - L1Md_F3 LINE L1 0 6584 618 7 1725 929 174 134 14 chr1 149477826 149478042 -47717390 - Lx5 LINE L1 -1206 5844 5603 7 1725 387 279 8 0 chr1 149478473 149478595 -47716837 + Lx6 LINE L1 7337 7459 -1 7 1725 367 261 162 5 chr1 149479071 149479256 -47716176 - L1M3 LINE L1 -1188 4952 4739 7 1725 21 36 0 0 chr1 149479637 149479665 -47715767 + AT_rich Low_complexity Low_complexity 1 28 0 7 1725 596 302 32 4 chr1 149480267 149480516 -47714916 + L1MA4 LINE L1 5634 5889 -411 7 1725 24 0 0 0 chr1 149481176 149481200 -47714232 + AT_rich Low_complexity Low_complexity 1 24 0 7 1725 359 213 53 11 chr1 149481926 149482021 -47713411 + HAL1-3A_ME LINE L1 1976 2074 -784 7 1725 21 36 0 0 chr1 149482156 149482184 -47713248 + AT_rich Low_complexity Low_complexity 1 28 0 7 1725 21 95 0 0 chr1 149482231 149482294 -47713138 + AT_rich Low_complexity Low_complexity 1 63 0 7 1725 222 37 0 0 chr1 149482412 149482439 -47712993 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1725 351 0 0 0 chr1 149482673 149482712 -47712720 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1725 543 315 47 33 chr1 149483116 149483392 -47712040 + B4A SINE B4 1 280 -12 7 1725 598 25 25 0 chr1 149483421 149483501 -47711931 + (CA)n Simple_repeat Simple_repeat 2 83 0 7 1725 468 332 48 14 chr1 149484451 149484659 -47710773 + B3 SINE B2 2 216 0 7 1725 595 287 201 0 chr1 149484937 149485181 -47710251 - Lx6 LINE L1 0 7460 7168 7 1725 5364 179 56 13 chr1 149485183 149486241 -47709191 + RLTR25A LTR ERVK 1 1103 0 7 1725 1071 302 57 3 chr1 149486245 149486613 -47708819 - Lx6 LINE L1 -301 7159 6772 7 1725 528 258 188 9 chr1 149486708 149486984 -47708448 - Lx6 LINE L1 -574 6886 6455 7 1725 236 222 109 18 chr1 149486973 149487028 -47708404 - Lx6 LINE L1 -1063 6633 6574 7 1725 1588 199 74 57 chr1 149487027 149487433 -47707999 - Lx5 LINE L1 -1029 6021 5609 7 1725 649 203 45 57 chr1 149487433 149487665 -47707767 - Lx5 LINE L1 -525 5355 5128 7 1725 4736 189 20 20 chr1 149487673 149488188 -47707244 - RMER17B LTR ERVK 0 958 436 7 1725 513 0 0 0 chr1 149488188 149488245 -47707187 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1725 4736 189 20 20 chr1 149488245 149488687 -47706745 - RMER17B LTR ERVK -523 435 1 7 1725 658 275 55 32 chr1 149488952 149489170 -47706262 + LTRIS4 LTR ERV1 285 507 0 7 1725 25 0 0 0 chr1 149489619 149489644 -47705788 + AT_rich Low_complexity Low_complexity 1 25 0 7 1725 1330 215 63 68 chr1 149489969 149490349 -47705083 - ORR1C1 LTR MaLR 0 378 1 7 1725 275 273 73 16 chr1 149491097 149491153 -47704279 + BC1_Mm scRNA scRNA 14 73 -79 7 1725 3437 161 29 14 chr1 149491153 149491367 -47704065 + Lx2A1 LINE L1 6418 6626 -382 7 1725 4102 118 8 99 chr1 149491367 149491724 -47703708 + RMER17A LTR ERVK 1 336 -415 7 1725 1571 0 6 0 chr1 149491724 149491903 -47703529 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1725 4102 118 8 99 chr1 149491903 149492371 -47703061 + RMER17A LTR ERVK 337 751 0 7 1725 3437 161 29 14 chr1 149492371 149492736 -47702696 + Lx2A1 LINE L1 6627 7006 -2 7 1725 275 273 73 16 chr1 149492736 149492802 -47702630 + BC1_Mm scRNA scRNA 74 142 -10 7 1725 608 181 60 0 chr1 149492797 149492913 -47702519 - RLTR12B LTR ERVK -405 123 1 7 1725 582 351 106 50 chr1 149493489 149493905 -47701527 - ORR1C1-int LTR MaLR -275 1305 725 7 1725 627 301 27 23 chr1 149493940 149494161 -47701271 - MTE2a LTR MaLR -20 359 138 7 1725 312 48 0 0 chr1 149494266 149494308 -47701124 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 7 1725 1072 95 0 7 chr1 149495417 149495555 -47699877 + B1_Mus2 SINE Alu 1 138 -9 7 1725 276 30 0 0 chr1 149495555 149495588 -47699844 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1725 375 23 0 0 chr1 149495604 149495648 -47699784 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1725 406 279 201 15 chr1 149495811 149496135 -47699297 - L1MA7 LINE L1 -361 5930 5547 7 1725 229 221 13 25 chr1 149496603 149496682 -47698750 + CT-rich Low_complexity Low_complexity 2 79 0 7 1725 683 241 0 6 chr1 149496949 149497112 -47698320 + Lx2B LINE L1 6836 6997 -3 7 1725 246 62 0 0 chr1 149497322 149497354 -47698078 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 7 1725 3651 111 17 25 chr1 149497355 149497947 -47697485 - Lx3_Mus LINE L1 -19 6990 6404 7 1725 566 167 15 15 chr1 149498162 149498296 -47697136 + CT-rich Low_complexity Low_complexity 1 134 0 7 1725 510 309 54 29 chr1 149498357 149498637 -47696795 - Lx8 LINE L1 -315 7158 6872 7 1725 40 37 0 0 chr1 149498675 149498729 -47696703 + AT_rich Low_complexity Low_complexity 1 54 0 7 1725 1481 278 55 22 chr1 149498860 149499261 -47696171 - Lx5 LINE L1 -7 7043 6630 7 1725 2418 84 3 19 chr1 149499273 149499637 -47695795 - L1Md_F2 LINE L1 -4 6578 6221 7 1725 1237 233 87 43 chr1 149499654 149500000 -47695432 - RLTR12B LTR ERVK -11 517 157 7 1725 750 183 13 13 chr1 149500001 149500156 -47695276 - RLTR12B LTR ERVK -373 155 1 1 1725 4746 212 38 12 chr1 149500156 149501511 -47693921 - Lx5 LINE L1 -417 6633 5238 2 1725 3348 188 17 63 chr1 149501756 149502439 -47692993 + L1VL4 LINE L1 85 695 -5663 3 1725 2678 123 20 16 chr1 149502439 149502878 -47692554 + L1_Mus4 LINE L1 6196 6636 0 4 1725 1814 102 21 18 chr1 149502878 149503246 -47692186 + L1VL4 LINE L1 683 996 -5339 3 1725 6496 137 25 1 chr1 149503245 149504537 -47690895 + L1_Mus4 LINE L1 5314 6636 0 5 1725 28 0 0 0 chr1 149504603 149504631 -47690801 + AT_rich Low_complexity Low_complexity 1 28 0 6 1725 1036 118 61 17 chr1 149504643 149504662 -47690770 - B2_Mm2 SINE B2 -6 189 171 7 1725 971 145 0 0 chr1 149504662 149504807 -47690625 + B1_Mus1 SINE Alu 1 145 -3 8 1725 1036 118 61 17 chr1 149504807 149504968 -47690464 - B2_Mm2 SINE B2 -25 170 1 7 1725 22 0 0 0 chr1 149504975 149504997 -47690435 + AT_rich Low_complexity Low_complexity 1 22 0 9 1725 351 44 0 0 chr1 149505170 149505215 -47690217 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1725 28 71 0 0 chr1 149505691 149505747 -47689685 + AT_rich Low_complexity Low_complexity 1 56 0 1 1725 23 68 0 0 chr1 149506558 149506602 -47688830 + AT_rich Low_complexity Low_complexity 1 44 0 1 1725 711 281 129 23 chr1 149508988 149509086 -47686346 + Lx8 LINE L1 6635 6748 -948 1 1725 2053 159 27 8 chr1 149509086 149509460 -47685972 + Lx LINE L1 6274 6654 0 1 1725 773 335 85 19 chr1 149509460 149510105 -47685327 + Lx8 LINE L1 6749 7445 -28 1 1725 413 348 101 40 chr1 149510202 149510320 -47685112 + L1MC3 LINE L1 6907 7031 -754 1 1725 3030 40 42 3 chr1 149510320 149510701 -47684731 - MTA_Mm LTR MaLR 0 396 1 1 1725 413 348 101 40 chr1 149510701 149511007 -47684425 + L1MC3 LINE L1 7032 7357 -428 1 1725 358 276 71 43 chr1 149511047 149511187 -47684245 - B1_Mur2 SINE Alu -1 148 5 1 1725 225 305 68 27 chr1 149511220 149511439 -47683993 + L1MC3 LINE L1 7418 7645 -140 1 1725 450 0 0 0 chr1 149512320 149512370 -47683062 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1725 417 39 0 0 chr1 149512370 149512420 -47683012 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1725 2162 229 160 41 chr1 149512570 149513283 -47682149 - Lx2B LINE L1 -10 7048 6233 2 1725 23 54 0 0 chr1 149515639 149515676 -47679756 + AT_rich Low_complexity Low_complexity 1 37 0 2 1725 8497 25 1 0 chr1 149515737 149517203 -47678229 - L1Md_A LINE L1 0 6582 5116 2 1725 1454 120 0 21 chr1 149517544 149517783 -47677649 - L1Md_F2 LINE L1 0 6582 6349 2 1725 301 333 78 0 chr1 149518293 149518395 -47677037 + ORR1E LTR MaLR 11 120 -239 2 1725 35334 35 0 0 chr1 149518395 149523816 -47671616 + L1Md_T LINE L1 72 5589 -297 2 1725 8909 9 0 0 chr1 149523816 149524862 -47670570 + L1Md_T LINE L1 5590 6585 0 2 1725 235 347 71 60 chr1 149524900 149525084 -47670348 + ORR1E LTR MaLR 151 336 -23 2 1725 478 319 29 12 chr1 149525449 149525620 -47669812 - Lx8 LINE L1 -324 7149 6976 2 1725 21 0 0 0 chr1 149525727 149525748 -47669684 + AT_rich Low_complexity Low_complexity 1 21 0 2 1725 22 0 0 0 chr1 149525777 149525799 -47669633 + AT_rich Low_complexity Low_complexity 1 22 0 2 1725 707 151 25 0 chr1 149525997 149526116 -47669316 - B2_Mm2 SINE B2 -2 193 72 2 1725 28 0 0 0 chr1 149526118 149526146 -47669286 + AT_rich Low_complexity Low_complexity 1 28 0 3 1725 663 13 0 0 chr1 149526156 149526232 -47669200 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1725 5609 180 38 21 chr1 149526431 149526795 -47668637 + Lx LINE L1 4692 5041 -836 3 1725 3974 138 95 110 chr1 149526795 149527715 -47667717 + RMER17A2 LTR ERVK 1 906 0 3 1725 6415 154 15 16 chr1 149527715 149529259 -47666173 + Lx LINE L1 5042 6615 -39 3 1725 268 29 0 0 chr1 149529684 149529718 -47665714 - U2 snRNA snRNA -154 34 1 3 1725 26 30 0 0 chr1 149530888 149530921 -47664511 + AT_rich Low_complexity Low_complexity 1 33 0 3 1725 534 259 51 67 chr1 149531562 149531740 -47663692 - MTD LTR MaLR -240 179 5 3 1725 192 77 0 0 chr1 149531963 149531989 -47663443 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1725 250 222 61 12 chr1 149532015 149532097 -47663335 - L1MA5 LINE L1 -2 6298 6213 3 1725 342 209 8 73 chr1 149532215 149532339 -47663093 + L1_Rod LINE L1 3798 3913 -1934 3 1725 200 156 22 22 chr1 149532339 149532385 -47663047 + T-rich Low_complexity Low_complexity 5 50 0 4 1725 1039 96 14 0 chr1 149532385 149532531 -47662901 - B1_Mus1 SINE Alu 0 148 1 4 1725 1310 272 62 64 chr1 149532533 149532916 -47662516 + L1_Rod LINE L1 3904 4308 -1539 3 1725 3735 110 28 0 chr1 149532916 149533480 -47661952 - L1_Mus3 LINE L1 -3 6635 6056 4 1725 1310 272 62 64 chr1 149533480 149533819 -47661613 + L1_Rod LINE L1 4309 4624 -1223 3 1725 4481 191 20 99 chr1 149533928 149534927 -47660505 - L1VL2 LINE L1 -3573 2313 1410 4 1725 351 0 0 0 chr1 149534927 149534966 -47660466 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1725 6196 121 5 18 chr1 149534966 149535952 -47659480 - L1VL2 LINE L1 -4477 1409 430 4 1725 6558 127 23 57 chr1 149536031 149537203 -47658229 + Lx LINE L1 5527 6647 -7 4 1725 806 0 11 0 chr1 149538195 149538289 -47657143 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 4 1725 26 30 0 0 chr1 149538345 149538378 -47657054 + AT_rich Low_complexity Low_complexity 1 33 0 4 1725 22 70 0 0 chr1 149538475 149538518 -47656914 + AT_rich Low_complexity Low_complexity 1 43 0 4 1725 386 243 148 19 chr1 149538610 149538820 -47656612 - L1MA4 LINE L1 -388 5912 5676 4 1725 32 67 0 0 chr1 149539341 149539401 -47656031 + AT_rich Low_complexity Low_complexity 1 60 0 5 1725 411 56 0 0 chr1 149539984 149540038 -47655394 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1725 319 125 38 0 chr1 149540060 149540140 -47655292 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 1725 25195 91 116 7 chr1 149540220 149544731 -47650701 + L1Md_F2 LINE L1 570 5585 -298 5 1725 7414 80 4 2 chr1 149544732 149545726 -47649706 + L1Md_F2 LINE L1 5587 6582 0 5 1725 212 0 36 0 chr1 149545926 149545954 -47649478 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1725 872 271 5 0 chr1 149545954 149546146 -47649286 - B3 SINE B2 -20 196 4 5 1725 288 0 0 0 chr1 149546593 149546625 -47648807 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1725 1506 259 54 0 chr1 149547003 149547355 -47648077 - MTC LTR MaLR -2 419 49 5 1725 433 201 136 80 chr1 149547357 149547439 -47647993 + B2_Mm2 SINE B2 3 95 -100 5 1725 507 33 0 0 chr1 149547439 149547500 -47647932 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1725 433 201 136 80 chr1 149547500 149547560 -47647872 + B2_Mm2 SINE B2 96 157 -38 5 1725 1001 16 8 0 chr1 149547560 149547683 -47647749 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 6 1725 433 201 136 80 chr1 149547683 149547701 -47647731 + B2_Mm2 SINE B2 158 172 -23 5 1725 319 340 40 40 chr1 149548217 149548367 -47647065 + MTEa LTR MaLR 1 150 -229 6 1725 450 82 9 27 chr1 149548825 149548888 -47646544 + L1_Mm LINE L1 5536 5615 -569 6 1725 8113 34 13 6 chr1 149548888 149549877 -47645555 + L1Md_F2 LINE L1 5587 6582 0 6 1725 856 313 43 36 chr1 149549886 149550446 -47644986 + ERVL-B4-int LTR ERVL 791 1416 -4345 6 1725 445 321 18 6 chr1 149550528 149550710 -47644722 + ERVL-B4-int LTR ERVL 2501 2747 -3014 6 1725 1086 326 40 50 chr1 149550903 149551478 -47643954 + ERVL-B4-int LTR ERVL 2990 3558 -2203 6 1725 440 35 17 0 chr1 149551488 149551546 -47643886 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1725 2488 172 130 42 chr1 149551546 149552115 -47643317 + RLTR26 LTR ERVK 20 638 -4 6 1725 828 55 0 0 chr1 149552115 149552225 -47643207 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 1725 600 70 0 0 chr1 149552225 149552311 -47643121 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 215 1354 331 76 53 chr1 149552446 149553561 -47641871 + ERVL-B4-int LTR ERVL 3726 4865 -849 6 1726 223 333 62 41 chr1 149553568 149553665 -47641767 + L3 LINE CR1 4389 4487 -2 6 1726 335 318 6 19 chr1 149553673 149553830 -47641602 + ERVL-B4-int LTR ERVL 5078 5232 -529 6 1726 4865 233 123 26 chr1 149553925 149554946 -47640486 - Lx5 LINE L1 -3 7047 5980 7 1726 1283 256 32 149 chr1 149554946 149555638 -47639794 + RMER19C LTR ERVK 1 611 0 7 1726 4865 235 79 27 chr1 149555638 149556153 -47639279 - Lx5 LINE L1 -1071 5979 5373 7 1726 972 283 36 7 chr1 149556155 149556433 -47638999 + RMER15 LTR ERVL 288 573 -2 7 1726 2509 90 27 5 chr1 149557400 149557769 -47637663 + L1Md_F2 LINE L1 6206 6582 0 7 1726 1797 102 31 22 chr1 149558080 149558399 -47637033 - RLTRETN_Mm LTR ERVK 0 322 1 7 1726 37 86 0 0 chr1 149558743 149558836 -47636596 + AT_rich Low_complexity Low_complexity 1 93 0 7 1726 21 36 0 0 chr1 149558854 149558882 -47636550 + AT_rich Low_complexity Low_complexity 1 28 0 7 1726 25 31 0 0 chr1 149559156 149559188 -47636244 + AT_rich Low_complexity Low_complexity 1 32 0 7 1726 281 204 43 7 chr1 149559766 149559904 -47635528 + (TA)n Simple_repeat Simple_repeat 1 143 0 7 1726 24 0 0 0 chr1 149560007 149560031 -47635401 + AT_rich Low_complexity Low_complexity 1 24 0 7 1726 21 0 0 0 chr1 149560212 149560233 -47635199 + AT_rich Low_complexity Low_complexity 1 21 0 8 1726 1138 88 12 0 chr1 149560233 149560404 -47635028 - L1_Mus3 LINE L1 0 6638 6466 8 1726 24 32 0 0 chr1 149560700 149560731 -47634701 + AT_rich Low_complexity Low_complexity 1 31 0 8 1726 180 111 0 0 chr1 149560864 149560891 -47634541 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 8 1726 29 28 0 0 chr1 149561035 149561071 -47634361 + AT_rich Low_complexity Low_complexity 1 36 0 8 1726 267 301 75 35 chr1 149561131 149561331 -47634101 - Lx8 LINE L1 -2 7471 7264 8 1726 426 337 35 0 chr1 149561352 149561521 -47633911 - Lx8 LINE L1 -124 7349 7175 8 1726 241 356 50 44 chr1 149561591 149561773 -47633659 - Lx7 LINE L1 -625 7071 6889 8 1726 970 365 39 9 chr1 149561875 149562500 -47632932 - Lx8 LINE L1 -703 6770 6215 8 1726 243 0 0 0 chr1 149562503 149562530 -47632902 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1726 3110 226 59 67 chr1 149563194 149564103 -47631329 - RMER13B LTR ERVK -2 906 5 8 1726 504 371 84 60 chr1 149564649 149565019 -47630413 - MTEa LTR MaLR 0 379 1 9 1726 410 178 11 0 chr1 149566948 149567038 -47628394 + (TA)n Simple_repeat Simple_repeat 2 92 0 9 1726 1076 104 24 0 chr1 149567710 149567874 -47627558 + L1_Mus4 LINE L1 5711 5878 -758 9 1726 24 96 0 0 chr1 149568031 149568104 -47627328 + AT_rich Low_complexity Low_complexity 1 73 0 9 1726 540 298 92 33 chr1 149569276 149569644 -47625788 - L1MA10 LINE L1 -2 6332 5943 9 1726 2894 123 87 6 chr1 149569696 149570202 -47625230 - L1_Mus3 LINE L1 0 6638 6092 9 1726 302 71 0 0 chr1 149570206 149570248 -47625184 - L1_Mus3 LINE L1 -917 5719 5678 9 1726 5281 150 17 24 chr1 149570251 149571174 -47624258 + L1_Mus4 LINE L1 5712 6628 -8 9 1726 212 77 0 25 chr1 149571194 149571234 -47624198 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 9 1726 417 305 396 18 chr1 149571234 149571506 -47623926 - Lx8 LINE L1 -132 7341 6967 9 1726 4562 214 43 16 chr1 149572084 149573262 -47622170 + Lx4B LINE L1 5766 7047 -3 9 1726 2125 217 93 69 chr1 149573426 149574005 -47621427 + RLTR21 LTR ERVK 76 668 -904 1 1726 1941 253 75 22 chr1 149574043 149574347 -47621085 + Lx9 LINE L1 6858 7180 -464 1 1726 2661 30 0 60 chr1 149574347 149574695 -47620737 + IAPLTR2b LTR ERVK 1 327 0 1 1726 1941 253 75 22 chr1 149574695 149575020 -47620412 + Lx9 LINE L1 7181 7520 -124 1 1726 397 199 61 55 chr1 149575075 149575197 -47620235 + Lx9 LINE L1 7477 7593 -51 1 1726 7468 15 0 1 chr1 149575197 149576055 -47619377 + L1Md_T LINE L1 5725 6581 -1 1 1726 7096 33 0 1 chr1 149576061 149576910 -47618522 + L1Md_F3 LINE L1 5737 6584 0 1 1726 397 199 61 55 chr1 149576910 149576945 -47618487 + Lx9 LINE L1 7599 7641 -3 1 1726 387 0 0 0 chr1 149577052 149577095 -47618337 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1726 2333 224 40 10 chr1 149577167 149577800 -47617632 + Lx5 LINE L1 5445 6112 -938 1 1726 3183 247 25 5 chr1 149577810 149578562 -47616870 + Lx5 LINE L1 6267 7033 -17 1 1726 531 0 0 0 chr1 149578562 149578621 -47616811 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1726 23 0 0 0 chr1 149578771 149578794 -47616638 + AT_rich Low_complexity Low_complexity 1 23 0 1 1726 444 298 132 46 chr1 149578950 149579147 -47616285 + B4A SINE B4 3 216 -76 1 1726 483 18 0 0 chr1 149579249 149579305 -47616127 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1726 423 0 0 0 chr1 149579402 149579449 -47615983 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1726 29722 108 15 18 chr1 149579457 149581851 -47613581 - L1_Mus1 LINE L1 -1 6566 4155 1 1726 2628 77 38 5 chr1 149581851 149582219 -47613213 - L1_Mus1 LINE L1 0 6567 6188 1 1726 29722 108 7 24 chr1 149582219 149586071 -47609361 - L1_Mus1 LINE L1 -1729 4154 396 1 1726 1493 181 0 4 chr1 149586081 149586358 -47609074 - Lx2 LINE L1 -2 6995 6720 1 1726 3692 165 4 28 chr1 149586358 149587033 -47608399 + Lx2 LINE L1 6066 6724 -273 1 1726 1380 259 88 36 chr1 149587735 149588259 -47607173 + Lx9 LINE L1 6973 7523 -121 1 1726 207 232 0 0 chr1 149588259 149588315 -47607117 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1726 469 178 134 0 chr1 149588317 149588474 -47606958 + Lx9 LINE L1 7464 7641 -3 1 1726 4349 10 0 0 chr1 149589153 149589651 -47605781 - L1Md_T LINE L1 -522 5361 4864 1 1726 1874 23 0 0 chr1 149589650 149589865 -47605567 + L1Md_T LINE L1 5372 5586 -297 1 1726 8254 37 0 1 chr1 149589865 149590861 -47604571 + L1Md_T LINE L1 5587 6581 -1 1 1726 231 336 0 61 chr1 149591015 149591129 -47604303 - L1MC LINE L1 -2155 5727 5621 1 1726 21 0 0 0 chr1 149591460 149591481 -47603951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1726 4438 230 43 66 chr1 149592285 149593550 -47601882 - Lx5 LINE L1 -4 7046 5811 1 1726 34 93 0 0 chr1 149593619 149593716 -47601716 + AT_rich Low_complexity Low_complexity 1 97 0 1 1726 406 324 38 11 chr1 149595436 149595620 -47599812 + Lx9 LINE L1 7187 7375 -269 1 1726 21 0 0 0 chr1 149596807 149596828 -47598604 + AT_rich Low_complexity Low_complexity 1 21 0 1 1726 1287 20 0 0 chr1 149597500 149597650 -47597782 + (GGAA)n Simple_repeat Simple_repeat 4 153 0 1 1726 4022 141 35 0 chr1 149597801 149598452 -47596980 - Lx2 LINE L1 -5 6992 6319 1 1726 397 18 0 0 chr1 149598451 149598506 -47596926 + L1Md_T LINE L1 6528 6582 0 1 1726 261 0 0 0 chr1 149600195 149600224 -47595208 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1726 495 95 0 0 chr1 149600224 149600297 -47595135 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1726 324 0 0 0 chr1 149601933 149601969 -47593463 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1726 5660 33 0 0 chr1 149602202 149602874 -47592558 - L1Md_T LINE L1 -2 6580 5909 1 1726 234 372 48 40 chr1 149604376 149604502 -47590930 - MER58A DNA MER1_type -79 145 19 1 1726 360 0 0 0 chr1 149604996 149605036 -47590396 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1726 34 42 0 0 chr1 149605381 149605429 -47590003 + AT_rich Low_complexity Low_complexity 1 48 0 1 1726 199 0 0 61 chr1 149605454 149605487 -47589945 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1726 1114 57 0 0 chr1 149605490 149605630 -47589802 - B1_Mm SINE Alu -6 141 2 1 1726 288 0 0 0 chr1 149606424 149606456 -47588976 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1726 379 202 18 0 chr1 149606456 149606570 -47588862 + GA-rich Low_complexity Low_complexity 1 116 0 1 1726 3497 268 92 1 chr1 149607041 149607948 -47587484 - Lx6 LINE L1 -334 7126 6138 1 1726 32 43 0 0 chr1 149608747 149608793 -47586639 + AT_rich Low_complexity Low_complexity 1 46 0 1 1726 263 315 46 33 chr1 149608890 149609041 -47586391 - Lx9 LINE L1 -174 7470 7318 1 1726 29 104 0 0 chr1 149609062 149609168 -47586264 + AT_rich Low_complexity Low_complexity 1 106 0 1 1726 1381 271 45 11 chr1 149609402 149609779 -47585653 + MTD LTR MaLR 1 390 -29 1 1726 3099 39 5 3 chr1 149610980 149611364 -47584068 + L1Md_F3 LINE L1 6199 6583 -1 1 1726 198 103 0 0 chr1 149611382 149611411 -47584021 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1726 21 0 0 0 chr1 149611502 149611523 -47583909 + AT_rich Low_complexity Low_complexity 1 21 0 1 1726 458 17 17 0 chr1 149611628 149611687 -47583745 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1726 405 86 0 0 chr1 149612542 149612600 -47582832 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1726 323 348 89 0 chr1 149612862 149612974 -47582458 - B1F1 SINE Alu -20 129 8 1 1726 2012 145 37 8 chr1 149614012 149614366 -47581066 - Lx LINE L1 -1 6653 6290 1 1726 266 250 53 32 chr1 149614965 149615060 -47580372 - MTEa LTR MaLR -4 375 279 1 1726 1318 291 90 0 chr1 149615083 149615451 -47579981 - MTD LTR MaLR -14 405 5 1 1726 878 249 78 4 chr1 149615497 149615727 -47579705 + Lx3C LINE L1 6719 6965 -11 1 1726 29 60 0 0 chr1 149615789 149615839 -47579593 + AT_rich Low_complexity Low_complexity 1 50 0 1 1726 5216 192 44 7 chr1 149615839 149616913 -47578519 - Lx2B LINE L1 -5 6995 5883 1 1726 524 28 0 40 chr1 149616922 149616997 -47578435 + (CCCTAA)n Simple_repeat Simple_repeat 2 73 0 1 1726 974 164 6 11 chr1 149616997 149617166 -47578266 + Lx2B LINE L1 5757 5925 -1075 1 1726 900 207 100 32 chr1 149617232 149617452 -47577980 + RMER2 LTR ERV1 1 235 -332 1 1726 1672 159 19 3 chr1 149617452 149617774 -47577658 - L1_Mur1 LINE L1 -1745 4141 3815 1 1726 1090 274 37 55 chr1 149617823 149618171 -47577261 - MTD LTR MaLR -69 350 9 1 1726 338 327 20 0 chr1 149618348 149618449 -47576983 - ORR1E LTR MaLR -254 105 3 1 1726 6152 17 0 0 chr1 149618459 149619169 -47576263 - L1Md_T LINE L1 -381 5502 4793 1 1726 724 35 0 0 chr1 149619158 149619243 -47576189 + L1Md_T LINE L1 5502 5586 -297 1 1726 8197 41 1 0 chr1 149619243 149620237 -47575195 + L1Md_T LINE L1 5587 6581 -1 1 1726 26 74 0 0 chr1 149621161 149621215 -47574217 + AT_rich Low_complexity Low_complexity 1 54 0 1 1726 222 37 0 0 chr1 149621612 149621639 -47573793 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1 1726 442 173 0 0 chr1 149621805 149621880 -47573552 - Lx2 LINE L1 -593 6404 6330 1 1726 2069 136 36 41 chr1 149621882 149622297 -47573135 + Lx LINE L1 6242 6654 0 1 1726 322 282 35 0 chr1 149622394 149622479 -47572953 - B3 SINE B2 0 216 129 1 1726 212 188 0 14 chr1 149622989 149623059 -47572373 + (TTAGGG)n Simple_repeat Simple_repeat 4 72 0 1 1726 866 170 7 0 chr1 149623658 149623805 -47571627 - B1_Mur3 SINE Alu 0 149 2 1 1726 3178 279 91 48 chr1 149623815 149625073 -47570359 - Lx7 LINE L1 0 7696 6385 1 1726 1555 201 40 0 chr1 149625074 149625402 -47570030 + Lx2 LINE L1 6655 6995 -2 1 1726 23 33 0 0 chr1 149625526 149625556 -47569876 + AT_rich Low_complexity Low_complexity 1 30 0 1 1726 265 379 52 58 chr1 149627220 149627446 -47567986 + Lx8 LINE L1 6962 7201 -272 1 1726 2798 46 3 0 chr1 149627446 149627796 -47567636 + L1Md_F2 LINE L1 6230 6580 -2 1 1726 265 379 52 58 chr1 149627796 149627877 -47567555 + Lx8 LINE L1 7202 7267 -206 1 1726 3887 174 96 23 chr1 149628215 149629048 -47566384 - RLTR13D6 LTR ERVK -8 894 1 1 1726 3807 176 26 1 chr1 149629105 149629792 -47565640 + Lx LINE L1 5077 5780 -103 1 1726 336 253 0 0 chr1 149629802 149629877 -47565555 + Lx LINE L1 5972 6046 -608 1 1726 2095 275 54 92 chr1 149629882 149630845 -47564587 + RMER17B LTR ERVK 1 926 -32 1 1726 3527 134 29 25 chr1 149630846 149631459 -47563973 + Lx LINE L1 6039 6654 0 1 1726 1850 103 29 32 chr1 149631693 149632005 -47563427 + L1_Mus4 LINE L1 6308 6618 -18 1 1726 213 121 0 0 chr1 149632045 149632078 -47563354 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1726 492 342 58 26 chr1 149632594 149632750 -47562682 + RSINE1 SINE B4 3 163 -2 1 1726 456 375 48 52 chr1 149632953 149633173 -47562259 + B4A SINE B4 2 215 -77 1 1726 261 0 0 0 chr1 149633173 149633202 -47562230 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1726 456 375 48 52 chr1 149633202 149633271 -47562161 + B4A SINE B4 216 289 -3 1 1726 234 128 0 0 chr1 149633307 149633346 -47562086 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1726 2684 269 82 9 chr1 149634906 149635652 -47559780 - MERVK26-int LTR ERVK -835 6084 5285 1 1726 16234 117 17 11 chr1 149636280 149639494 -47555938 + L1_Mus1 LINE L1 3335 6566 -1 1 1726 298 222 0 0 chr1 149639520 149639592 -47555840 + Lx6 LINE L1 7377 7448 -12 1 1726 3861 218 80 49 chr1 149639625 149640814 -47554618 + L1_Mur2 LINE L1 1703 2928 -2949 1 1726 400 216 0 0 chr1 149640817 149640891 -47554541 + RLTR21 LTR ERVK 4 77 -1495 1 1726 816 78 0 30 chr1 149641911 149642043 -47553389 + L1Md_F2 LINE L1 6442 6569 -13 1 1726 21 0 0 0 chr1 149642073 149642094 -47553338 + AT_rich Low_complexity Low_complexity 1 21 0 1 1726 243 0 0 0 chr1 149642829 149642856 -47552576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1726 1023 99 0 0 chr1 149643906 149644048 -47551384 - B1_Mus1 SINE Alu -2 146 5 1 1726 4747 177 11 1 chr1 149644270 149645151 -47550281 + L1_Mur2 LINE L1 3750 4639 -1238 1 1726 629 203 7 7 chr1 149645144 149645298 -47550134 + Lx2 LINE L1 6042 6195 -802 1 1726 1797 179 21 15 chr1 149645300 149645635 -47549797 + RLTR17 LTR ERVK 286 622 -70 1 1726 508 29 14 14 chr1 149645692 149645763 -47549669 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1726 211 248 68 8 chr1 149645767 149645885 -47549547 + (TA)n Simple_repeat Simple_repeat 2 126 0 1 1726 255 61 0 0 chr1 149646945 149646978 -47548454 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1726 272 326 43 11 chr1 149647145 149647238 -47548194 + MTEa LTR MaLR 82 177 -202 2 1726 1095 124 8 0 chr1 149647254 149647522 -47547910 + (GGAA)n Simple_repeat Simple_repeat 1 270 0 2 1726 256 389 0 0 chr1 149647526 149647616 -47547816 + MTEa LTR MaLR 167 256 -123 2 1726 4148 110 20 60 chr1 149647648 149648412 -47547020 - L1_Mur1 LINE L1 -1815 4071 3339 2 1726 5471 148 38 16 chr1 149648412 149649063 -47546369 + Lx3A LINE L1 5967 6648 -333 2 1726 2822 46 3 0 chr1 149649063 149649408 -47546024 - ORR1A0 LTR MaLR 0 346 1 2 1726 5471 148 38 16 chr1 149649408 149649736 -47545696 + Lx3A LINE L1 6649 6967 -14 2 1726 261 0 0 0 chr1 149649737 149649766 -47545666 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2 1726 22 70 0 0 chr1 149649776 149649819 -47545613 + AT_rich Low_complexity Low_complexity 1 43 0 2 1726 24 32 0 0 chr1 149649913 149649944 -47545488 + AT_rich Low_complexity Low_complexity 1 31 0 2 1726 355 169 25 38 chr1 149650344 149650424 -47545008 + RLTR23 LTR ERV1 316 394 -36 2 1726 284 269 35 7 chr1 149650733 149650845 -47544587 - Lx2A1 LINE L1 -1117 5891 5779 2 1726 544 314 13 13 chr1 149651069 149651227 -47544205 + B3A SINE B2 2 159 -39 2 1726 21 0 0 0 chr1 149651521 149651542 -47543890 + AT_rich Low_complexity Low_complexity 1 21 0 2 1726 1749 81 21 4 chr1 149651589 149651825 -47543607 - Lx3_Mus LINE L1 -571 6438 6199 2 1726 21 57 0 0 chr1 149651830 149651865 -47543567 + AT_rich Low_complexity Low_complexity 1 35 0 2 1726 1105 163 167 80 chr1 149652151 149652438 -47542994 + Lx2 LINE L1 6650 6961 -36 2 1726 334 122 0 0 chr1 149652448 149652497 -47542935 + Lx3_Mus LINE L1 6429 6477 -532 2 1726 4293 195 42 50 chr1 149652500 149653446 -47541986 + ORR1A3-int LTR MaLR 1024 1962 -1 2 1726 1386 224 15 58 chr1 149653447 149653774 -47541658 + ORR1A3 LTR MaLR 1 313 -13 2 1726 409 234 18 26 chr1 149653783 149653897 -47541535 + Lx9 LINE L1 6798 6910 -734 2 1726 35 24 0 0 chr1 149654153 149654195 -47541237 + AT_rich Low_complexity Low_complexity 1 42 0 2 1726 424 288 93 28 chr1 149654219 149654699 -47540733 - L1M2 LINE L1 -660 5524 5008 2 1726 261 327 40 13 chr1 149654758 149654910 -47540522 - L1M2 LINE L1 -1383 4760 4605 2 1726 28572 99 40 4 chr1 149654914 149659841 -47535591 + L1Md_F2 LINE L1 476 5585 -298 2 1726 7329 87 4 2 chr1 149659842 149660835 -47534597 + L1Md_F2 LINE L1 5587 6581 -1 2 1726 766 116 37 0 chr1 149661191 149661355 -47534077 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 2 1726 313 333 70 60 chr1 149661423 149661507 -47533925 + ID_B1 SINE B4 25 211 -13 2 1726 465 218 129 0 chr1 149661507 149661608 -47533824 + B1_Mur4 SINE Alu 24 137 -13 2 1726 180 0 0 0 chr1 149661610 149661630 -47533802 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2 1726 228 132 53 0 chr1 149662018 149662056 -47533376 + RMER12B LTR ERVK 792 831 -573 2 1726 960 224 5 159 chr1 149662057 149662325 -47533107 + RMER12B LTR ERVK 987 1224 -180 2 1726 711 62 0 0 chr1 149662325 149662422 -47533010 + (TATG)n Simple_repeat Simple_repeat 4 100 0 2 1726 960 268 24 103 chr1 149662422 149662679 -47532753 + RMER12B LTR ERVK 1225 1436 -136 2 1726 7019 119 9 18 chr1 149662984 149664415 -47531017 - L1_Mus3 LINE L1 -1 6637 5210 2 1726 10613 120 7 0 chr1 149664413 149666031 -47529401 + L1_Mus3 LINE L1 3566 5194 -689 2 1726 265 310 68 31 chr1 149666532 149666695 -47528737 + L1M4 LINE L1 5492 5660 -524 2 1726 25 0 0 0 chr1 149666908 149666933 -47528499 + AT_rich Low_complexity Low_complexity 1 25 0 2 1726 201 132 0 0 chr1 149668161 149668199 -47527233 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1726 29 28 0 0 chr1 149668481 149668517 -47526915 + AT_rich Low_complexity Low_complexity 1 36 0 2 1726 480 382 33 13 chr1 149668617 149668922 -47526510 + Lx9 LINE L1 6434 6744 -900 2 1726 706 300 130 71 chr1 149668939 149669640 -47525792 + Lx9 LINE L1 6856 7597 -47 2 1726 223 193 32 54 chr1 149669660 149669753 -47525679 + (TTAAA)n Simple_repeat Simple_repeat 3 93 0 2 1726 3876 144 2 22 chr1 149669790 149670428 -47525004 - Lx2 LINE L1 -1 6996 6372 2 1726 251 333 0 0 chr1 149670791 149670872 -47524560 + Tigger5 DNA MER2_type 2318 2398 -8 2 1726 924 9 0 0 chr1 149671167 149671272 -47524160 + (TTC)n Simple_repeat Simple_repeat 2 106 0 2 1726 1105 284 54 11 chr1 149671276 149671628 -47523804 - L1_Mur3 LINE L1 -6646 1066 700 2 1726 422 306 109 53 chr1 149671646 149671912 -47523520 - L1_Mur3 LINE L1 -7316 396 116 2 1726 767 322 8 0 chr1 149671912 149672170 -47523262 + Lx9 LINE L1 7178 7437 -207 2 1726 3039 204 24 43 chr1 149672168 149673000 -47522432 - Lx LINE L1 -397 6600 5801 2 1726 207 0 0 0 chr1 149673000 149673023 -47522409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1726 1061 72 0 7 chr1 149673023 149673162 -47522270 - B1_Mus2 SINE Alu -9 138 1 2 1726 2520 165 11 24 chr1 149673162 149673570 -47521862 - Lx LINE L1 -70 5813 5403 2 1726 209 57 29 0 chr1 149673570 149673605 -47521827 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1726 982 130 0 0 chr1 149673605 149673743 -47521689 - B1_Mm SINE Alu -9 138 1 2 1726 2520 165 11 24 chr1 149673743 149673798 -47521634 - Lx LINE L1 -481 5402 5356 2 1726 21223 45 2 1 chr1 149673789 149677082 -47518350 - L1Md_F2 LINE L1 -11 6571 3275 2 1726 6648 187 25 14 chr1 149677082 149678473 -47516959 - Lx LINE L1 -529 5354 3949 2 1726 5015 112 51 5 chr1 149679321 149680087 -47515345 - L1_Mus4 LINE L1 -2 6634 5834 2 1726 2024 144 45 0 chr1 149680087 149680420 -47515012 + L1_Mus4 LINE L1 5481 5828 -55 2 1726 27 0 0 0 chr1 149681103 149681130 -47514302 + AT_rich Low_complexity Low_complexity 1 27 0 2 1726 27 81 0 0 chr1 149681879 149681941 -47513491 + AT_rich Low_complexity Low_complexity 1 62 0 2 1726 969 76 0 0 chr1 149682050 149682181 -47513251 + (TTC)n Simple_repeat Simple_repeat 2 132 0 2 1726 218 32 32 0 chr1 149682184 149682215 -47513217 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1726 1002 83 0 0 chr1 149682710 149682843 -47512589 + B1_Mus1 SINE Alu 3 135 -13 2 1726 894 19 0 0 chr1 149682850 149682954 -47512478 + (GAA)n Simple_repeat Simple_repeat 2 105 0 2 1726 255 81 27 0 chr1 149682965 149683002 -47512430 + U2 snRNA snRNA 1 38 -150 2 1726 353 296 82 0 chr1 149683294 149683453 -47511979 - L1M4 LINE L1 -1478 4668 4497 2 1726 203 235 30 30 chr1 149683545 149683646 -47511786 + T-rich Low_complexity Low_complexity 1 101 0 2 1726 884 138 73 48 chr1 149683652 149683858 -47511574 + L1_Mus3 LINE L1 6428 6638 0 2 215 389 359 97 26 chr1 149683860 149684310 -47511122 - L1M4 LINE L1 -1832 4314 3829 2 1727 919 65 8 0 chr1 149684319 149684443 -47510989 + B1_Mus2 SINE Alu 22 146 -1 2 1727 22 0 0 0 chr1 149684452 149684474 -47510958 + AT_rich Low_complexity Low_complexity 1 22 0 2 1727 249 322 126 0 chr1 149684501 149684588 -47510844 + PB1D10 SINE Alu 2 99 -18 2 1727 214 352 94 16 chr1 149684505 149684632 -47510800 + ID_B1 SINE B4 88 224 0 2 1727 1336 279 100 17 chr1 149684663 149685153 -47510279 + Lx6 LINE L1 6528 7456 -4 2 1727 24 53 0 0 chr1 149686016 149686054 -47509378 + AT_rich Low_complexity Low_complexity 1 38 0 2 1727 189 0 0 0 chr1 149686155 149686176 -47509256 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 1727 5241 179 13 3 chr1 149686178 149687156 -47508276 - Lx2 LINE L1 -12 6985 5998 2 1727 4696 95 4 12 chr1 149687188 149687917 -47507515 - L1_Mus2 LINE L1 -76 6491 5605 2 1727 3567 94 6 2 chr1 149687914 149688417 -47507015 + L1_Mus2 LINE L1 5064 5568 -315 2 1727 4256 162 36 2 chr1 149688417 149689416 -47506016 - Lx2 LINE L1 -985 6012 4992 2 1727 186 71 0 0 chr1 149689416 149689444 -47505988 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1727 2255 90 16 0 chr1 149689495 149689817 -47505615 - L1_Mus1 LINE L1 0 6567 6241 2 1727 1053 139 0 0 chr1 149689823 149689981 -47505451 + L1_Mus1 LINE L1 6085 6242 -325 2 1727 2335 186 4 4 chr1 149689973 149690427 -47505005 - Lx2 LINE L1 -878 5008 4555 2 1727 474 18 0 0 chr1 149690428 149690483 -47504949 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1727 398 376 31 77 chr1 149690584 149691065 -47504367 - Lx7 LINE L1 -501 7195 6737 2 1727 227 217 17 0 chr1 149691132 149691192 -47504240 + (CATA)n Simple_repeat Simple_repeat 4 64 0 2 1727 583 203 194 1 chr1 149691192 149691357 -47504075 - RLTR21 LTR ERVK -149 1255 1068 2 1727 2190 169 44 0 chr1 149691585 149691990 -47503442 + RMER6A LTR ERVK 1 423 -333 2 1727 1789 154 42 10 chr1 149691990 149692299 -47503133 + RLTR19 LTR ERVK 1 319 -180 2 1727 506 29 15 0 chr1 149692299 149692367 -47503065 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 2 1727 350 267 107 16 chr1 149692367 149692391 -47503041 + RLTR33 LTR ERVK 109 134 -544 2 1727 1693 189 19 0 chr1 149692385 149692698 -47502734 - ORR1A2 LTR MaLR -8 319 1 2 1727 587 246 58 7 chr1 149692706 149692845 -47502587 + RLTR19 LTR ERVK 352 497 -2 2 1727 1521 177 22 16 chr1 149692845 149693164 -47502268 + RMER6A LTR ERVK 424 744 -12 2 1727 1770 213 25 11 chr1 149693182 149693330 -47502102 + ORR1C1 LTR MaLR 8 157 -221 2 1727 285 51 0 0 chr1 149693330 149693369 -47502063 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1727 1770 213 25 11 chr1 149693369 149693586 -47501846 + ORR1C1 LTR MaLR 158 378 0 2 1727 1306 329 39 24 chr1 149693586 149694024 -47501408 - Lx7 LINE L1 -1075 6621 6190 2 1727 477 62 0 0 chr1 149694024 149694089 -47501343 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1727 1306 329 39 24 chr1 149694089 149694349 -47501083 - Lx7 LINE L1 -1507 6189 5913 2 1727 391 268 7 21 chr1 149694645 149694790 -47500642 - Lx9 LINE L1 0 7644 7502 2 1727 24 0 0 0 chr1 149695900 149695924 -47499508 + AT_rich Low_complexity Low_complexity 1 24 0 2 1727 386 85 0 0 chr1 149696915 149696974 -47498458 + L1_Mus2 LINE L1 6507 6565 -1 2 1727 675 0 0 0 chr1 149697005 149697080 -47498352 + (GAA)n Simple_repeat Simple_repeat 2 76 0 2 1727 672 274 68 8 chr1 149697302 149697538 -47497894 - Lx7 LINE L1 -310 7386 7137 2 1727 476 182 13 0 chr1 149697541 149697618 -47497814 - RMER13B LTR ERVK -822 86 9 2 1727 2570 239 15 67 chr1 149697626 149698020 -47497412 + RMER6C LTR ERVK 12 387 -303 2 1727 198 0 0 0 chr1 149698020 149698042 -47497390 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1727 2570 239 15 67 chr1 149698042 149698055 -47497377 + RMER6C LTR ERVK 388 397 -293 2 1727 5673 93 2 2 chr1 149698055 149698860 -47496572 - L1_Mus2 LINE L1 -1 6565 5761 2 1727 2570 239 15 67 chr1 149698860 149699167 -47496265 + RMER6C LTR ERVK 398 690 0 2 1727 21 36 0 0 chr1 149699227 149699255 -47496177 + AT_rich Low_complexity Low_complexity 1 28 0 2 1727 21 36 0 0 chr1 149699581 149699609 -47495823 + AT_rich Low_complexity Low_complexity 1 28 0 2 1727 23 33 0 0 chr1 149700336 149700366 -47495066 + AT_rich Low_complexity Low_complexity 1 30 0 2 1727 1609 196 25 82 chr1 149700549 149700946 -47494486 + ORR1B1 LTR MaLR 14 384 -10 2 1727 1064 236 19 0 chr1 149700950 149701166 -47494266 + ORR1B1 LTR MaLR 175 394 0 2 1727 26 30 0 0 chr1 149701538 149701571 -47493861 + AT_rich Low_complexity Low_complexity 1 33 0 2 1727 4729 204 70 16 chr1 149702632 149703675 -47491757 + Lx2 LINE L1 5898 6996 -1 2 1727 6127 43 3 20 chr1 149703710 149704493 -47490939 + L1Md_F3 LINE L1 5815 6583 -1 2 1727 31798 95 4 19 chr1 149704593 149709291 -47486141 - L1Md_F2 LINE L1 -1 6581 1978 2 1727 180 77 0 0 chr1 149709291 149709317 -47486115 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1727 31798 118 23 21 chr1 149709317 149710886 -47484546 - L1Md_F2 LINE L1 -3906 1977 387 2 1727 25 75 0 0 chr1 149711585 149711638 -47483794 + AT_rich Low_complexity Low_complexity 1 53 0 2 1727 195 69 0 0 chr1 149711688 149711717 -47483715 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1727 3329 38 0 2 chr1 149711980 149712377 -47483055 + MTA_Mm LTR MaLR 1 396 0 3 1727 22 35 0 0 chr1 149712486 149712515 -47482917 + AT_rich Low_complexity Low_complexity 1 29 0 3 1727 293 373 94 63 chr1 149712622 149712908 -47482524 - ORR1E LTR MaLR -57 302 8 3 1727 453 281 192 35 chr1 149712933 149713188 -47482244 - MTE-int LTR MaLR -76 1504 1210 3 1727 1549 184 124 15 chr1 149713188 149713607 -47481825 + RMER6A LTR ERVK 6 503 -253 3 1727 1808 226 97 14 chr1 149713609 149714094 -47481338 + RLTR11A2 LTR ERVK 3 527 0 3 1727 694 142 0 9 chr1 149714094 149714201 -47481231 + RMER6A LTR ERVK 590 695 -61 3 1727 259 267 95 15 chr1 149714484 149714621 -47480811 - L1_Mur3 LINE L1 -1465 4415 4268 3 1727 2854 181 57 11 chr1 149714621 149715169 -47480263 + RMER4B LTR ERVK 1 573 -12 3 1727 517 278 36 68 chr1 149715169 149715447 -47479985 - L1_Mur3 LINE L1 -1609 4271 4003 3 1727 457 338 0 0 chr1 149715473 149715618 -47479814 + Lx8 LINE L1 6430 6574 -899 3 1727 365 302 0 0 chr1 149715678 149715774 -47479658 - RSINE1 SINE B4 -65 100 5 3 1727 287 228 11 0 chr1 149715800 149715892 -47479540 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1727 351 0 0 0 chr1 149716025 149716064 -47479368 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1727 252 0 0 0 chr1 149716577 149716605 -47478827 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1727 453 81 31 39 chr1 149716605 149716732 -47478700 + (TA)n Simple_repeat Simple_repeat 2 128 0 3 1727 22 0 0 0 chr1 149716768 149716790 -47478642 + AT_rich Low_complexity Low_complexity 1 22 0 3 1727 244 295 19 19 chr1 149716791 149716898 -47478534 - Lx9 LINE L1 -1 7643 7537 3 1727 616 216 9 0 chr1 149716898 149717009 -47478423 + B1_Mur3 SINE Alu 1 112 -37 3 1727 396 268 39 0 chr1 149717022 149717149 -47478283 - Lx9 LINE L1 -188 7456 7325 3 1727 386 211 13 0 chr1 149717681 149717757 -47477675 + Lx9 LINE L1 6831 6907 -737 3 1727 621 239 0 0 chr1 149718191 149718350 -47477082 + CT-rich Low_complexity Low_complexity 2 160 0 3 1727 1730 282 20 8 chr1 149719862 149720259 -47475173 + RMER1B Other Other 52 453 -613 3 1727 2150 255 93 47 chr1 149720266 149720942 -47474490 + RMER1B Other Other 360 1066 0 3 1727 207 0 0 0 chr1 149721643 149721666 -47473766 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1727 355 113 0 0 chr1 149721931 149721993 -47473439 - Lx2A LINE L1 -618 6390 6329 3 1727 2000 228 79 22 chr1 149721992 149722486 -47472946 + Lx2B LINE L1 6475 6996 -4 3 1727 22 0 0 0 chr1 149722576 149722598 -47472834 + AT_rich Low_complexity Low_complexity 1 22 0 3 1727 3418 187 105 3 chr1 149722605 149723291 -47472141 - Lx4A LINE L1 -3 7055 6300 3 1727 988 154 0 112 chr1 149723287 149723484 -47471948 + Lx4A LINE L1 5366 5540 -337 3 1727 2411 175 25 5 chr1 149723478 149723926 -47471506 + Lx4A LINE L1 5848 6304 -754 3 1727 479 284 0 0 chr1 149723974 149724108 -47471324 + Lx6 LINE L1 7315 7448 -12 3 1727 280 133 0 0 chr1 149724550 149724595 -47470837 - URR1B DNA MER1_type 0 225 181 3 1727 592 69 0 38 chr1 149724994 149725099 -47470333 + (TCTCTG)n Simple_repeat Simple_repeat 3 103 0 3 1727 472 260 37 30 chr1 149725383 149725396 -47470036 - B1_Mus1 SINE Alu 0 148 136 3 1727 198 0 0 0 chr1 149725396 149725418 -47470014 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1727 472 260 37 30 chr1 149725418 149725539 -47469893 - B1_Mus1 SINE Alu -13 135 13 3 1727 235 49 49 0 chr1 149725663 149725704 -47469728 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1727 243 395 65 65 chr1 149726579 149726858 -47468574 + ORR1E LTR MaLR 81 359 0 3 1727 522 31 0 0 chr1 149729035 149729099 -47466333 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 3 1727 214 196 0 18 chr1 149730955 149731012 -47464420 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 1727 2659 82 11 3 chr1 149731548 149731915 -47463517 + L1_Mus1 LINE L1 6197 6566 -1 3 1727 29 0 0 0 chr1 149733279 149733308 -47462124 + AT_rich Low_complexity Low_complexity 1 29 0 3 1727 297 0 0 0 chr1 149733453 149733486 -47461946 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1727 1240 147 8 29 chr1 149734906 149735145 -47460287 - L1_Mus3 LINE L1 0 6638 6405 3 1727 2874 110 27 2 chr1 149735148 149735593 -47459839 + L1_Mus3 LINE L1 5922 6377 -261 3 1727 198 0 0 0 chr1 149735692 149735714 -47459718 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 3 1727 257 333 69 78 chr1 149736224 149736442 -47458990 + MLT1A LTR MaLR 125 340 -34 3 1727 624 50 0 0 chr1 149737552 149737632 -47457800 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1727 712 234 82 28 chr1 149737979 149738234 -47457198 - Lx9 LINE L1 0 7644 7376 3 1727 438 305 58 10 chr1 149738252 149738457 -47456975 - MER2 DNA MER2_type -5 340 126 3 1727 227 320 29 49 chr1 149739618 149739720 -47455712 - YREP_Mm Unknown Unknown -1490 322 223 3 1727 425 305 0 0 chr1 149739630 149739735 -47455697 + PB1D7 SINE Alu 9 113 -7 3 1727 495 33 0 0 chr1 149739856 149739917 -47455515 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1727 222 0 79 0 chr1 149740904 149740942 -47454490 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1727 3996 63 25 8 chr1 149740944 149741472 -47453960 - L1Md_F2 LINE L1 -15 6567 6031 3 1727 251 274 16 0 chr1 149741708 149741770 -47453662 - B2_Mm2 SINE B2 -122 73 11 3 1727 220 261 0 0 chr1 149742990 149743055 -47452377 + CT-rich Low_complexity Low_complexity 1 65 0 3 1727 226 360 35 49 chr1 149743061 149743204 -47452228 + MER54B LTR ERVL 166 306 -487 3 1727 278 206 26 64 chr1 149743434 149743476 -47451956 + polypurine Low_complexity Low_complexity 2 45 0 3 1727 255 31 0 0 chr1 149743476 149743508 -47451924 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 3 1727 278 206 26 64 chr1 149743508 149743543 -47451889 + polypurine Low_complexity Low_complexity 46 76 0 3 1727 669 47 0 0 chr1 149744497 149744582 -47450850 + (GA)n Simple_repeat Simple_repeat 1 85 0 3 1727 3065 132 30 0 chr1 149744582 149745082 -47450350 + Lx3A LINE L1 6465 6979 -2 3 1727 306 241 36 0 chr1 149745119 149745231 -47450201 + Lx9 LINE L1 7523 7638 -6 3 1727 758 41 10 0 chr1 149745680 149745778 -47449654 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 3 1727 465 256 147 0 chr1 149746200 149746329 -47449103 - B1_Mur1 SINE Alu -1 148 1 3 1727 23 0 0 0 chr1 149747302 149747325 -47448107 + AT_rich Low_complexity Low_complexity 1 23 0 3 1727 26 0 0 0 chr1 149748080 149748106 -47447326 + AT_rich Low_complexity Low_complexity 1 26 0 3 1727 350 327 81 9 chr1 149748190 149748412 -47447020 - Lx8 LINE L1 -28 7445 7208 3 1727 654 212 80 107 chr1 149748746 149749008 -47446424 - RMER1C Other Other -261 1081 724 3 1727 243 0 0 0 chr1 149749348 149749375 -47446057 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1727 26 82 0 0 chr1 149749447 149749508 -47445924 + AT_rich Low_complexity Low_complexity 1 61 0 3 1727 4728 52 3 2 chr1 149749599 149750200 -47445232 - L1Md_F2 LINE L1 -86 5797 5196 3 1727 6428 44 21 0 chr1 149750200 149750991 -47444441 + L1Md_F2 LINE L1 5772 6579 -3 3 1727 849 209 65 36 chr1 149751891 149752139 -47443293 + L1_Mur3 LINE L1 4659 4913 -967 3 1727 2045 249 45 8 chr1 149752150 149752753 -47442679 + L1_Mur3 LINE L1 5136 5760 -120 3 1727 29 47 0 0 chr1 149752792 149752835 -47442597 + AT_rich Low_complexity Low_complexity 1 43 0 3 1727 1045 233 21 51 chr1 149752856 149753191 -47442241 + Lx7 LINE L1 7365 7689 -7 3 1727 357 24 0 0 chr1 149753365 149753407 -47442025 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1727 234 105 0 0 chr1 149753421 149753459 -47441973 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1727 214 149 43 0 chr1 149754019 149754066 -47441366 + A-rich Low_complexity Low_complexity 4 52 0 3 1727 198 416 0 0 chr1 149754388 149754525 -47440907 + L2 LINE L2 1864 2000 -1419 3 1727 1347 164 19 30 chr1 149755702 149755972 -47439460 - ORR1A3 LTR MaLR 0 326 60 3 1727 212 73 73 0 chr1 149756234 149756275 -47439157 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 3 1727 255 324 91 111 chr1 149756613 149756893 -47438539 - B4A SINE B4 -18 274 36 3 1727 406 191 31 8 chr1 149756924 149757051 -47438381 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 3 1727 405 95 0 0 chr1 149757062 149757125 -47438307 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1727 241 377 14 58 chr1 149757215 149757353 -47438079 + B3A SINE B2 5 136 -62 3 1727 23 54 0 0 chr1 149757389 149757426 -47438006 + AT_rich Low_complexity Low_complexity 1 37 0 3 1727 803 228 119 0 chr1 149757897 149758099 -47437333 + URR1A DNA MER1_type 1 226 0 3 1727 350 356 70 15 chr1 149758388 149758659 -47436773 - B4A SINE B4 -6 286 1 3 1727 486 146 0 0 chr1 149758671 149758753 -47436679 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1727 727 163 14 0 chr1 149759568 149759715 -47435717 - L1_Mus3 LINE L1 -3 6635 6487 3 1727 1709 136 54 0 chr1 149759775 149760069 -47435363 - Lx LINE L1 -4 6650 6341 3 1727 433 71 29 0 chr1 149760215 149760285 -47435147 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1727 246 289 13 13 chr1 149760289 149760366 -47435066 + GA-rich Low_complexity Low_complexity 5 81 0 3 1727 274 339 58 17 chr1 149761282 149761456 -47433976 - Lx8 LINE L1 -299 7174 6994 3 1727 2157 67 0 3 chr1 149761476 149761761 -47433671 + L1Md_F2 LINE L1 6287 6570 -12 3 1727 286 123 35 0 chr1 149761864 149761921 -47433511 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 3 1727 306 331 57 71 chr1 149761923 149762203 -47433229 - Lx8 LINE L1 -813 6660 6385 3 1727 4479 48 2 5 chr1 149762230 149762795 -47432637 + L1Md_F2 LINE L1 6018 6580 -2 3 1727 442 174 11 11 chr1 149762819 149762912 -47432520 - Lx2 LINE L1 -710 6287 6195 3 1727 532 197 62 21 chr1 149762888 149763033 -47432399 + Lx2 LINE L1 6799 6949 -48 3 1727 186 43 0 0 chr1 149763073 149763096 -47432336 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1727 233 314 82 36 chr1 149763113 149763308 -47432124 - Lx8 LINE L1 -1140 6333 6130 3 1727 517 144 134 9 chr1 149763377 149763489 -47431943 + Lx LINE L1 6529 6654 0 3 1727 291 54 0 0 chr1 149763598 149763635 -47431797 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1727 24 0 0 0 chr1 149763799 149763823 -47431609 + AT_rich Low_complexity Low_complexity 1 24 0 3 1727 477 0 0 0 chr1 149764317 149764370 -47431062 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1727 4678 231 80 13 chr1 149765423 149766551 -47428881 - Lx5 LINE L1 -5 7045 5843 4 1727 2469 185 12 30 chr1 149766752 149767253 -47428179 + Lx2 LINE L1 6506 6997 0 4 1727 323 264 89 68 chr1 149767749 149767940 -47427492 + Lx7 LINE L1 7206 7400 -296 4 1727 203 237 0 0 chr1 149768427 149768465 -47426967 + polypyrimidine Low_complexity Low_complexity 2 39 0 4 1727 525 368 21 0 chr1 149769115 149769308 -47426124 + MTEb LTR MaLR 9 205 -174 4 1727 15616 54 1 1 chr1 149769344 149771325 -47424107 - L1Md_F2 LINE L1 -241 5642 3662 4 1727 7580 58 3 2 chr1 149771325 149772294 -47423138 + L1Md_F2 LINE L1 5601 6570 -12 4 1727 313 301 11 104 chr1 149772863 149773045 -47422387 + L1MC LINE L1 5682 5846 -2036 4 1727 318 165 33 0 chr1 149773045 149773078 -47422354 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1727 336 24 0 0 chr1 149773078 149773119 -47422313 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1727 318 165 33 0 chr1 149773119 149773176 -47422256 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1727 2570 281 129 8 chr1 149773220 149774424 -47421008 - Lx6 LINE L1 -389 7071 5723 4 1727 290 161 61 12 chr1 149774433 149774515 -47420917 - Lx3_Mus LINE L1 -1 7008 6923 4 1727 3907 158 35 6 chr1 149774524 149775220 -47420212 + L1_Mm LINE L1 4992 5707 -176 4 1727 4411 111 8 1 chr1 149775220 149775880 -47419552 + L1_Mus1 LINE L1 5904 6567 0 4 1727 470 338 38 47 chr1 149776728 149776939 -47418493 - B4A SINE B4 -67 225 17 4 1727 361 331 30 18 chr1 149777195 149777213 -47418219 + CYRA11_Mm Unknown Y-chromosome 153 172 -445 4 1727 758 205 7 0 chr1 149777213 149777364 -47418068 - URR1A DNA MER1_type 0 226 75 4 1727 5407 95 7 28 chr1 149777364 149777752 -47417680 + RLTR22_Mus LTR ERVK 1 374 -1434 4 1727 437 167 0 29 chr1 149777752 149777857 -47417575 - L1Md_F2 LINE L1 0 6582 6481 4 1727 5391 95 7 28 chr1 149777857 149778301 -47417131 + RLTR22_Mus LTR ERVK 375 816 -992 4 1727 1590 122 16 12 chr1 149778530 149778787 -47416645 + RLTR22_Mur LTR ERVK 1591 1848 0 4 1727 1457 237 119 20 chr1 149780120 149780572 -47414860 - RMER6C LTR ERVK -7 683 187 4 1727 969 59 37 0 chr1 149780573 149780708 -47414724 + L1_Mus3 LINE L1 5939 6078 -560 4 1727 261 229 0 35 chr1 149780737 149780823 -47414609 - L1_Mur3 LINE L1 -6568 1144 1062 4 1727 2394 44 0 0 chr1 149780820 149781118 -47414314 - L1_Mus3 LINE L1 -671 5967 5670 4 1727 4737 101 6 3 chr1 149781119 149781847 -47413585 + L1_Mm LINE L1 1582 2311 -3572 4 1727 1729 154 45 58 chr1 149782750 149783080 -47412352 - ORR1A3 LTR MaLR 0 326 1 4 1727 3646 181 30 82 chr1 149783080 149783405 -47412027 - ORR1A3-int LTR MaLR 0 1963 1688 4 1727 4064 169 30 3 chr1 149783405 149784134 -47411298 - Lx2 LINE L1 -1 6996 6248 4 1727 3646 181 30 82 chr1 149784134 149784608 -47410824 - ORR1A3-int LTR MaLR -276 1687 1206 4 1727 436 255 208 0 chr1 149785020 149785126 -47410306 - B3 SINE B2 -86 130 3 4 1727 6157 223 63 11 chr1 149785433 149786900 -47408532 - MERVL_2A-int LTR ERVL -4163 1598 56 4 1727 235 0 0 0 chr1 149786922 149786954 -47408478 - L1Md_T LINE L1 -3 6579 6548 4 1727 636 315 73 49 chr1 149787033 149787493 -47407939 - MT2B LTR ERVL -2 599 3 4 1727 609 170 0 0 chr1 149787598 149787710 -47407722 + (TA)n Simple_repeat Simple_repeat 1 112 0 4 1727 323 114 0 0 chr1 149787710 149787754 -47407678 - HAL1-3A_ME LINE L1 -846 2012 1969 4 1727 1108 286 47 17 chr1 149787776 149788075 -47407357 + MTD LTR MaLR 1 308 -111 4 1727 1934 157 3 3 chr1 149788091 149788418 -47407014 - ORR1A2 LTR MaLR 0 327 1 4 1727 261 0 43 43 chr1 149788434 149788480 -47406952 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 4 1727 7244 180 31 6 chr1 149788553 149790150 -47405282 - Lx2 LINE L1 0 6997 5352 4 1727 927 167 11 6 chr1 149790151 149790332 -47405100 + Lx2 LINE L1 5133 5314 -563 4 1727 452 355 80 4 chr1 149790591 149790865 -47404567 - Lx8 LINE L1 -398 7075 6781 4 1727 479 17 17 0 chr1 149790868 149790928 -47404504 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1727 303 89 0 0 chr1 149790936 149790981 -47404451 - IAPEY_LTR LTR ERVK 0 385 341 4 1727 1803 94 7 12 chr1 149790981 149791259 -47404173 - IAPEy-int LTR ERVK -7389 291 1 4 1727 3180 47 3 0 chr1 149791259 149791640 -47403792 - IAPEY_LTR LTR ERVK 0 385 4 4 1727 351 0 0 0 chr1 149791640 149791679 -47403753 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1727 287 351 52 6 chr1 149791767 149791939 -47403493 - Lx8 LINE L1 -822 6651 6472 4 1727 1493 143 0 60 chr1 149792166 149792449 -47402983 - Lx LINE L1 -6 6648 6383 4 1727 6047 69 37 14 chr1 149792456 149793289 -47402143 + L1Md_F2 LINE L1 5731 6582 0 4 1727 22 35 0 0 chr1 149794318 149794347 -47401085 + AT_rich Low_complexity Low_complexity 1 29 0 4 1727 31 26 0 0 chr1 149794650 149794688 -47400744 + AT_rich Low_complexity Low_complexity 1 38 0 4 1727 4140 221 31 37 chr1 149794789 149795980 -47399452 - Lx5 LINE L1 -375 6675 5477 4 1727 1652 175 62 0 chr1 149795980 149796288 -47399144 - ORR1A2 LTR MaLR 0 327 1 4 1727 2835 193 15 40 chr1 149796288 149796519 -47398913 - Lx5 LINE L1 -401 5476 5245 4 1727 1016 37 7 15 chr1 149796523 149796660 -47398772 - B1_Mm SINE Alu -1 146 11 4 1727 468 270 56 75 chr1 149796531 149796691 -47398741 - B4 SINE B4 -73 219 63 4 1727 493 84 30 40 chr1 149796737 149796836 -47398596 - Lx3_Mus LINE L1 0 7009 6912 4 1727 329 240 61 85 chr1 149796992 149797074 -47398358 + MIR SINE MIR 19 98 -170 4 1727 216 265 0 35 chr1 149797113 149797199 -47398233 + (TTAAA)n Simple_repeat Simple_repeat 1 83 0 4 1727 21 0 0 0 chr1 149797304 149797325 -47398107 + AT_rich Low_complexity Low_complexity 1 21 0 4 1727 2464 221 38 2 chr1 149797717 149798265 -47397167 + L1_Mur3 LINE L1 5133 5700 -180 4 1727 4371 182 89 71 chr1 149798265 149799055 -47396377 + RLTR25A LTR ERVK 1 848 -255 4 1727 4287 70 2 0 chr1 149799055 149799622 -47395810 - L1Md_F2 LINE L1 -1 6581 6014 4 1727 4371 182 89 71 chr1 149799622 149799662 -47395770 + RLTR25A LTR ERVK 849 886 -217 4 1727 459 0 0 0 chr1 149799662 149799713 -47395719 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1727 4371 182 89 71 chr1 149799713 149799965 -47395467 + RLTR25A LTR ERVK 887 1103 0 4 1727 231 200 0 0 chr1 149799976 149800021 -47395411 + Lx3C LINE L1 5735 5779 -1230 4 1727 2552 160 14 2 chr1 149800025 149800439 -47394993 + Lx3C LINE L1 6413 6831 -145 4 1727 1492 149 5 249 chr1 149800547 149800747 -47394685 - L1_Mur1 LINE L1 -438 5448 5284 4 1727 655 149 53 0 chr1 149800747 149800861 -47394571 - PB1D9 SINE Alu 0 120 1 4 1727 1492 149 5 249 chr1 149800861 149800921 -47394511 - L1_Mur1 LINE L1 -603 5283 5263 4 1727 994 80 58 0 chr1 149800921 149801059 -47394373 + B1_Mus2 SINE Alu 2 147 0 4 1727 1492 149 5 249 chr1 149801059 149801351 -47394081 - L1_Mur1 LINE L1 -624 5262 5030 4 1727 6313 101 23 1 chr1 149801352 149802254 -47393178 - L1_Mus3 LINE L1 -117 6521 5600 4 1727 224 194 0 0 chr1 149802409 149802445 -47392987 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1727 513 84 0 0 chr1 149802456 149802527 -47392905 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1727 562 14 0 0 chr1 149803736 149803807 -47391625 - L1Md_A LINE L1 0 6582 6512 4 1727 26 30 0 0 chr1 149804202 149804235 -47391197 + AT_rich Low_complexity Low_complexity 1 33 0 4 1727 331 329 70 88 chr1 149804485 149804738 -47390694 + MLT2B3 LTR ERVL 119 356 -361 4 1727 291 245 44 19 chr1 149804910 149805068 -47390364 + (TCTA)n Simple_repeat Simple_repeat 2 163 0 4 1727 304 386 58 58 chr1 149805089 149805350 -47390082 + MLT1A LTR MaLR 95 355 -19 4 1727 838 222 11 5 chr1 149805810 149805996 -47389436 - B2_Mm2 SINE B2 -7 188 2 4 1727 275 0 29 0 chr1 149806213 149806248 -47389184 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1727 619 355 15 5 chr1 149807040 149807244 -47388188 + B3 SINE B2 3 208 -8 4 1727 355 400 30 6 chr1 149808397 149808563 -47386869 + B3A SINE B2 1 170 -28 4 1727 25 0 0 0 chr1 149809325 149809350 -47386082 + AT_rich Low_complexity Low_complexity 1 25 0 4 1727 28 0 0 0 chr1 149810610 149810638 -47384794 + AT_rich Low_complexity Low_complexity 1 28 0 4 1727 9217 117 15 12 chr1 149810638 149811803 -47383629 - Lx3_Mus LINE L1 0 7009 5837 4 1727 1852 109 31 25 chr1 149811803 149812123 -47383309 - RLTRETN_Mm LTR ERVK 0 322 1 4 1727 9217 107 7 21 chr1 149812123 149813119 -47382313 - Lx3_Mus LINE L1 -47 5839 4857 4 215 7454 163 40 78 chr1 149813151 149816026 -47379406 - Lx4A LINE L1 0 7058 4286 4 1728 1506 198 29 19 chr1 149816032 149816347 -47379085 + L1_Mur2 LINE L1 196 513 -6199 4 1728 318 288 219 6 chr1 149816349 149816513 -47378919 + Lx6 LINE L1 7262 7460 0 4 1728 27 49 0 0 chr1 149816516 149816557 -47378875 + AT_rich Low_complexity Low_complexity 1 41 0 4 1728 558 314 0 7 chr1 149816607 149816745 -47378687 - RSINE1 SINE B4 -25 140 4 4 1728 270 21 42 21 chr1 149816800 149816848 -47378584 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1728 3542 281 33 32 chr1 149816916 149817721 -47377711 + Lx6 LINE L1 6209 7018 -442 4 1728 252 0 0 0 chr1 149817721 149817749 -47377683 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1728 3542 281 33 32 chr1 149817749 149818014 -47377418 + Lx6 LINE L1 7019 7280 -180 4 1728 276 278 80 44 chr1 149819421 149819480 -47375952 - PB1D10 SINE Alu 0 117 52 4 1728 204 40 0 0 chr1 149819480 149819505 -47375927 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 4 1728 276 278 80 44 chr1 149819505 149819558 -47375874 - PB1D10 SINE Alu -66 51 1 4 1728 254 252 27 2 chr1 149820340 149820429 -47375003 - Lx4B LINE L1 -8 7050 6899 4 1728 619 83 0 12 chr1 149820909 149820994 -47374438 - L1_Mus2 LINE L1 -307 6259 6176 4 1728 851 90 14 14 chr1 149820994 149821141 -47374291 + L1_Mus3 LINE L1 6485 6631 -7 4 1728 3788 119 17 5 chr1 149821471 149822052 -47373380 - Lx LINE L1 -1 6653 6066 4 1728 486 75 0 0 chr1 149822498 149822565 -47372867 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1728 287 313 34 57 chr1 149823066 149823154 -47372278 - B1F1 SINE Alu -52 97 12 4 1728 286 115 16 16 chr1 149824225 149824287 -47371145 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1728 6925 180 57 5 chr1 149824653 149827126 -47368306 + L1VL1 LINE L1 420 3020 -2857 4 1728 451 98 0 0 chr1 149827149 149827210 -47368222 + L1_Mus3 LINE L1 3331 3391 -2492 4 1728 7426 131 8 3 chr1 149827204 149827222 -47368210 + L1_Mus3 LINE L1 4712 4731 -1152 4 1728 732 23 0 0 chr1 149827222 149827308 -47368124 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 4 1728 7426 125 12 5 chr1 149827308 149829198 -47366234 + L1_Mus3 LINE L1 4732 6638 0 4 1728 336 24 0 0 chr1 149830123 149830164 -47365268 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1728 21 0 0 0 chr1 149830180 149830201 -47365231 + AT_rich Low_complexity Low_complexity 1 21 0 4 1728 328 381 43 0 chr1 149830506 149830645 -47364787 + B1F SINE Alu 5 149 0 5 1728 1051 340 24 9 chr1 149831113 149831567 -47363865 - Lx7 LINE L1 -382 7314 6854 5 1728 286 358 70 63 chr1 149831632 149831790 -47363642 - B3A SINE B2 -13 185 27 5 1728 3319 8 0 0 chr1 149832179 149832554 -47362878 - L1Md_A LINE L1 0 6582 6208 5 1728 27247 11 2 9 chr1 149832562 149836734 -47358698 - L1Md_A LINE L1 -1504 4379 241 5 1728 759 236 110 0 chr1 149837127 149837390 -47358042 + L1_Mur2 LINE L1 440 731 -5981 5 1728 239 254 0 15 chr1 149837603 149837671 -47357761 + GA-rich Low_complexity Low_complexity 2 68 0 5 1728 180 0 0 0 chr1 149837694 149837714 -47357718 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1728 212 224 0 29 chr1 149838001 149838070 -47357362 + T-rich Low_complexity Low_complexity 4 70 0 5 1728 4375 116 111 18 chr1 149838187 149838914 -47356518 + L1_Mus3 LINE L1 5838 6632 -6 5 1728 25 31 0 0 chr1 149839955 149839987 -47355445 + AT_rich Low_complexity Low_complexity 1 32 0 5 1728 606 266 35 0 chr1 149840061 149840204 -47355228 + B1_Mur4 SINE Alu 2 149 -1 5 1728 1546 58 0 0 chr1 149840298 149840486 -47354946 + B2_Mm1a SINE B2 1 188 -5 5 1728 2743 92 5 8 chr1 149840610 149841004 -47354428 + L1_Mus2 LINE L1 6172 6564 -2 5 1728 246 293 0 0 chr1 149841225 149841283 -47354149 - MIRm SINE MIR -10 266 209 5 1728 300 277 55 63 chr1 149841640 149841767 -47353665 + Lx6 LINE L1 6630 6755 -705 5 1728 548 121 11 0 chr1 149841769 149841860 -47353572 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 5 1728 978 262 87 42 chr1 149841893 149842180 -47353252 + Lx6 LINE L1 6763 7062 -398 5 1728 592 65 21 11 chr1 149842584 149842678 -47352754 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 5 1728 231 103 0 0 chr1 149843708 149843747 -47351685 + B3 SINE B2 172 210 -6 5 1728 23 54 0 0 chr1 149843809 149843846 -47351586 + AT_rich Low_complexity Low_complexity 1 37 0 5 1728 317 268 134 0 chr1 149843863 149843945 -47351487 - B3 SINE B2 -89 127 35 5 1728 3320 31 0 0 chr1 149844319 149844711 -47350721 + L1Md_T LINE L1 5195 5586 -297 5 1728 8485 30 0 0 chr1 149844711 149845707 -47349725 + L1Md_T LINE L1 5587 6582 0 5 1728 559 149 102 9 chr1 149846336 149846444 -47348988 - PB1D9 SINE Alu 0 120 3 5 1728 428 323 12 0 chr1 149846478 149846642 -47348790 + CT-rich Low_complexity Low_complexity 3 168 0 5 1728 408 292 21 21 chr1 149847015 149847155 -47348277 + Lx8 LINE L1 6264 6403 -1070 5 1728 304 253 13 13 chr1 149847158 149847234 -47348198 + CT-rich Low_complexity Low_complexity 2 77 0 5 1728 4903 185 28 8 chr1 149847239 149848240 -47347192 - L1_Mur2 LINE L1 -234 5643 4623 5 1728 794 184 25 15 chr1 149848259 149848470 -47346962 + L1_Mur2 LINE L1 3766 3972 -1905 5 1728 2102 172 27 0 chr1 149848473 149848879 -47346553 + L1_Mur2 LINE L1 4192 4608 -1269 5 1728 26 50 0 0 chr1 149848881 149848921 -47346511 + AT_rich Low_complexity Low_complexity 1 40 0 5 1728 550 68 0 22 chr1 149849067 149849157 -47346275 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1728 234 310 22 82 chr1 149849286 149849469 -47345963 - B2_Mm2 SINE B2 -4 191 20 5 1728 323 238 12 12 chr1 149851051 149851132 -47344300 - RCHARR1 DNA MER1_type -370 604 524 5 1728 1413 269 92 10 chr1 149851299 149851780 -47343652 - RCHARR1 DNA MER1_type -452 522 3 5 1728 1275 72 33 11 chr1 149852194 149852370 -47343062 + B2_Mm2 SINE B2 1 182 -13 5 1728 813 11 0 0 chr1 149852370 149852464 -47342968 + (GAA)n Simple_repeat Simple_repeat 2 95 0 5 1728 204 40 0 0 chr1 149853582 149853607 -47341825 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1728 536 320 52 76 chr1 149854314 149854726 -47340706 - MTE2a LTR MaLR -14 405 1 5 1728 1087 292 139 24 chr1 149855091 149855596 -47339836 - Lx8 LINE L1 -711 6762 6200 5 1728 386 311 64 58 chr1 149855841 149855998 -47339434 + B3A SINE B2 2 168 -30 5 1728 480 59 0 0 chr1 149855998 149856066 -47339366 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1728 260 311 64 58 chr1 149856066 149856096 -47339336 + B2_Mm2 SINE B2 159 190 -5 5 1728 449 369 102 11 chr1 149856087 149856361 -47339071 - MTD-int LTR MaLR -340 1240 942 5 1728 363 143 0 0 chr1 149856440 149856496 -47338936 - ORR1A4 LTR MaLR 0 329 274 5 1728 198 0 0 0 chr1 149856509 149856531 -47338901 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 1728 974 139 7 0 chr1 149856531 149856675 -47338757 - B1_Mus1 SINE Alu -2 146 2 5 1728 261 117 12 38 chr1 149856712 149856792 -47338640 + T-rich Low_complexity Low_complexity 1 78 0 5 1728 1092 92 0 0 chr1 149856799 149856941 -47338491 - B1_Mm SINE Alu -3 144 3 5 1728 1418 215 60 15 chr1 149856947 149857282 -47338150 - ORR1B1 LTR MaLR -44 350 1 5 1728 521 301 57 84 chr1 149857282 149857710 -47337722 - MTD-int LTR MaLR -750 508 1 5 1728 569 346 65 57 chr1 149857723 149858125 -47337307 - MTD LTR MaLR -14 405 1 5 1728 558 189 26 0 chr1 149858846 149859013 -47336419 - MT2B LTR ERVL -380 221 1 5 1728 345 62 0 0 chr1 149859014 149859062 -47336370 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1728 243 0 0 0 chr1 149860817 149860844 -47334588 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1728 7518 159 19 30 chr1 149860845 149863051 -47332381 - Lx3C LINE L1 -3 6973 4789 5 1728 2538 135 5 0 chr1 149863046 149863462 -47331970 + L1_Mur1 LINE L1 3532 3949 -1937 5 1728 272 225 11 0 chr1 149863851 149863940 -47331492 - Lx9 LINE L1 -66 7578 7489 5 1728 27 0 0 0 chr1 149863953 149863980 -47331452 + AT_rich Low_complexity Low_complexity 1 27 0 5 1728 462 146 0 0 chr1 149864009 149864091 -47331341 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1728 1131 75 0 0 chr1 149864123 149864269 -47331163 + B1_Mm SINE Alu 2 147 0 5 1728 420 250 0 0 chr1 149864271 149864383 -47331049 + A-rich Low_complexity Low_complexity 1 112 0 5 1728 252 314 0 0 chr1 149864437 149864542 -47330890 + GA-rich Low_complexity Low_complexity 2 106 0 5 1728 3245 146 9 14 chr1 149864873 149865435 -47329997 - Lx2 LINE L1 -1 6996 6438 5 1728 38 51 0 0 chr1 149866423 149866482 -47328950 + AT_rich Low_complexity Low_complexity 1 59 0 5 1728 839 302 25 30 chr1 149866756 149867118 -47328314 - Lx7 LINE L1 -372 7324 6965 5 1728 276 250 0 0 chr1 149867427 149867523 -47327909 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1728 24 53 0 0 chr1 149868011 149868049 -47327383 + AT_rich Low_complexity Low_complexity 1 38 0 5 1728 26 50 0 0 chr1 149868547 149868587 -47326845 + AT_rich Low_complexity Low_complexity 1 40 0 5 1728 32334 88 12 4 chr1 149868853 149872409 -47323023 - L1Md_F2 LINE L1 0 6582 3004 5 1728 240 59 0 0 chr1 149872409 149872443 -47322989 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1728 32334 118 16 16 chr1 149872443 149875031 -47320401 - L1Md_F2 LINE L1 -2880 3003 410 5 1728 37 23 0 0 chr1 149875458 149875502 -47319930 + AT_rich Low_complexity Low_complexity 1 44 0 5 1728 229 369 0 0 chr1 149875549 149875633 -47319799 + B3 SINE B2 2 85 -131 5 1728 377 302 32 5 chr1 149875779 149875995 -47319437 + Lx9 LINE L1 7415 7636 -8 5 1728 22 0 0 0 chr1 149876205 149876227 -47319205 + AT_rich Low_complexity Low_complexity 1 22 0 5 1728 379 208 0 13 chr1 149876669 149876747 -47318685 - Lx2 LINE L1 -634 6363 6287 5 1728 3586 147 2 15 chr1 149876747 149877341 -47318091 + Lx LINE L1 6047 6632 -22 5 1728 623 188 35 63 chr1 149878452 149878594 -47316838 + Lx3A LINE L1 6834 6971 -10 5 1728 227 31 31 0 chr1 149878595 149878627 -47316805 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 1728 201 254 0 0 chr1 149878949 149879008 -47316424 + A-rich Low_complexity Low_complexity 1 59 0 5 1728 299 287 8 16 chr1 149879588 149879712 -47315720 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 5 1728 34 24 0 0 chr1 149879898 149879939 -47315493 + AT_rich Low_complexity Low_complexity 1 41 0 5 1728 681 303 55 52 chr1 149880315 149880604 -47314828 - Lx7 LINE L1 -910 6786 6497 5 1728 239 259 17 0 chr1 149880613 149880671 -47314761 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 5 1728 328 259 11 11 chr1 149880675 149880765 -47314667 - Lx8 LINE L1 -1284 6189 6100 5 1728 565 315 42 42 chr1 149882008 149882253 -47313179 + Lx8 LINE L1 7140 7399 -74 5 1728 920 288 54 39 chr1 149882290 149882677 -47312755 + Lx6 LINE L1 7056 7448 -12 5 1728 25 0 0 0 chr1 149882869 149882894 -47312538 + AT_rich Low_complexity Low_complexity 1 25 0 5 1728 216 0 0 0 chr1 149883034 149883058 -47312374 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1728 22 0 0 0 chr1 149883792 149883814 -47311618 + AT_rich Low_complexity Low_complexity 1 22 0 5 1728 204 67 0 0 chr1 149883929 149883959 -47311473 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 1728 585 28 0 0 chr1 149884942 149885013 -47310419 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1728 200 119 0 67 chr1 149885103 149885148 -47310284 + T-rich Low_complexity Low_complexity 2 43 0 5 1728 293 304 23 3 chr1 149885955 149886071 -47309361 - Lx7 LINE L1 -398 7298 7194 5 1728 1994 286 36 6 chr1 149886144 149886664 -47308768 - Lx6 LINE L1 -167 7293 6758 5 1728 462 108 0 0 chr1 149886671 149886754 -47308678 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1728 299 186 46 64 chr1 149886754 149886863 -47308569 - Lx6 LINE L1 -714 6746 6640 5 1728 270 270 52 0 chr1 149887050 149887165 -47308267 + Lx9 LINE L1 7400 7520 -124 5 1728 268 326 23 0 chr1 149887170 149887299 -47308133 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 5 1728 438 303 11 11 chr1 149887319 149887496 -47307936 + (TATG)n Simple_repeat Simple_repeat 4 180 0 5 1728 675 299 62 119 chr1 149887699 149888120 -47307312 + RLTR23 LTR ERV1 8 404 -26 5 1728 222 37 0 0 chr1 149888488 149888515 -47306917 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1728 30 27 0 0 chr1 149888740 149888777 -47306655 + AT_rich Low_complexity Low_complexity 1 37 0 5 1728 25 65 0 0 chr1 149888871 149888917 -47306515 + AT_rich Low_complexity Low_complexity 1 46 0 5 1728 254 289 34 11 chr1 149889227 149889330 -47306102 + CT-rich Low_complexity Low_complexity 1 105 0 5 1728 32 67 0 0 chr1 149889440 149889500 -47305932 + AT_rich Low_complexity Low_complexity 1 60 0 5 1728 2732 178 43 30 chr1 149890553 149891116 -47304316 + RLTR26 LTR ERVK 39 608 -34 5 1728 3203 280 25 10 chr1 149891116 149891952 -47303480 + Lx5 LINE L1 6162 7010 -40 5 1728 1608 53 0 9 chr1 149892942 149893152 -47302280 - L1Md_T LINE L1 0 6582 6375 6 1728 313 26 0 0 chr1 149893152 149893190 -47302242 + L1_Mm LINE L1 1861 1898 -3985 6 1728 521 262 70 16 chr1 149894283 149894527 -47300905 - L1_Mur3 LINE L1 -1488 4655 4371 6 1728 294 267 0 32 chr1 149894530 149894623 -47300809 + L1_Rod LINE L1 4656 4745 -1102 6 1728 562 326 13 23 chr1 149894772 149895080 -47300352 + Lx9 LINE L1 7196 7500 -144 6 1728 1495 186 53 116 chr1 149895637 149896015 -47299417 + ORR1B1 LTR MaLR 41 394 0 6 1728 583 354 66 8 chr1 149896598 149896854 -47298578 + ORR1E LTR MaLR 83 353 -6 6 1728 314 366 86 55 chr1 149896850 149897142 -47298290 - MLT1A0 LTR MaLR -23 342 42 6 1728 303 93 0 0 chr1 149897512 149897555 -47297877 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1728 361 311 0 94 chr1 149897871 149898020 -47297412 + Lx8 LINE L1 6562 6696 -777 6 1728 254 356 37 86 chr1 149898026 149898045 -47297387 + B4 SINE B4 69 79 -213 6 1728 663 231 20 27 chr1 149898045 149898192 -47297240 + B1_Mur4 SINE Alu 3 148 -2 6 1728 475 260 49 0 chr1 149898499 149898622 -47296810 - Lx9 LINE L1 -334 7310 7182 6 1728 180 0 0 0 chr1 149898625 149898645 -47296787 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1728 252 0 0 0 chr1 149898654 149898682 -47296750 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1728 701 263 10 20 chr1 149898685 149898883 -47296549 - Lx9 LINE L1 -477 7167 6972 6 1728 22 0 0 0 chr1 149898883 149898905 -47296527 + AT_rich Low_complexity Low_complexity 1 22 0 6 1728 444 243 18 0 chr1 149898931 149899042 -47296390 + Lx9 LINE L1 7340 7452 -192 6 1728 1950 202 189 81 chr1 149899045 149899727 -47295705 + RMER6A LTR ERVK 1 756 0 6 1728 433 210 80 0 chr1 149899757 149899895 -47295537 + Lx9 LINE L1 7494 7642 -2 6 1728 336 295 120 32 chr1 149901128 149901345 -47294087 - L1MB8 LINE L1 -295 5883 5648 6 1728 26 50 0 0 chr1 149901646 149901686 -47293746 + AT_rich Low_complexity Low_complexity 1 40 0 6 1728 504 0 0 0 chr1 149902069 149902125 -47293307 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1728 317 304 76 57 chr1 149902619 149902776 -47292656 - RLTR18 LTR ERVK -72 544 385 6 1728 880 262 54 35 chr1 149902792 149903235 -47292197 + RMER2 LTR ERV1 1 549 -18 6 1728 2135 270 87 56 chr1 149903528 149904564 -47290868 - Lx9 LINE L1 -492 7152 6085 6 1728 22 35 0 0 chr1 149905440 149905469 -47289963 + AT_rich Low_complexity Low_complexity 1 29 0 6 1728 29 28 0 0 chr1 149906604 149906640 -47288792 + AT_rich Low_complexity Low_complexity 1 36 0 6 1728 3226 65 5 11 chr1 149906771 149907209 -47288223 + L1_Mus1 LINE L1 6132 6566 -1 6 1728 333 279 9 19 chr1 149907591 149907697 -47287735 - MTC LTR MaLR 0 421 317 6 1728 236 306 11 56 chr1 149907688 149907778 -47287654 + MTD LTR MaLR 247 332 -87 6 1728 669 256 35 41 chr1 149907770 149907978 -47287454 - MTC LTR MaLR -182 214 1 6 1728 408 82 0 0 chr1 149908586 149908647 -47286785 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1728 372 298 36 23 chr1 149908655 149908802 -47286630 - B4A SINE B4 -11 281 107 6 1728 224 194 43 29 chr1 149910237 149910306 -47285126 + T-rich Low_complexity Low_complexity 5 74 0 6 1728 276 287 13 53 chr1 149910406 149910557 -47284875 + CT-rich Low_complexity Low_complexity 4 148 0 6 1728 405 0 0 0 chr1 149910649 149910694 -47284738 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1728 180 0 0 0 chr1 149910695 149910715 -47284717 + (CG)n Simple_repeat Simple_repeat 2 21 0 6 1728 583 307 91 28 chr1 149911213 149911716 -47283716 + Lx5 LINE L1 6057 6800 -660 6 1728 780 275 59 7 chr1 149911710 149911981 -47283451 - Lx7 LINE L1 -342 7354 7070 6 1728 3167 171 18 3 chr1 149912209 149912942 -47282490 - Lx2B LINE L1 -848 6152 5414 6 1728 4063 162 84 30 chr1 149912938 149913746 -47281686 + Lx2B LINE L1 6145 6996 -4 6 1728 585 0 0 0 chr1 149913895 149913960 -47281472 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1728 753 70 0 0 chr1 149914254 149914354 -47281078 + (TA)n Simple_repeat Simple_repeat 1 100 0 6 1728 246 62 0 0 chr1 149914354 149914385 -47281047 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1728 535 312 7 0 chr1 149914400 149914538 -47280894 - B3A SINE B2 -27 171 33 6 1728 23 54 0 0 chr1 149914870 149914907 -47280525 + AT_rich Low_complexity Low_complexity 1 37 0 6 1728 218 355 16 0 chr1 149914910 149914972 -47280460 - B1F SINE Alu -80 69 7 6 1728 13486 30 0 0 chr1 149916437 149918686 -47276746 - L1Md_T LINE L1 0 6582 4334 6 1728 13493 25 0 1 chr1 149918686 149920298 -47275134 + L1Md_T LINE L1 2701 4311 -1572 6 1728 2738 128 8 40 chr1 149920359 149920830 -47274602 - L1_Mus3 LINE L1 -2 6636 6181 6 1728 225 132 0 0 chr1 149920848 149920886 -47274546 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1728 21 0 0 0 chr1 149920967 149920988 -47274444 + AT_rich Low_complexity Low_complexity 1 21 0 6 1728 919 152 6 11 chr1 149921132 149921311 -47274121 + GA-rich Low_complexity Low_complexity 3 180 0 6 1728 24 32 0 0 chr1 149921614 149921645 -47273787 + AT_rich Low_complexity Low_complexity 1 31 0 6 1728 39 22 0 0 chr1 149921888 149921934 -47273498 + AT_rich Low_complexity Low_complexity 1 46 0 6 1728 40588 17 2 6 chr1 149922059 149929266 -47266166 - L1Md_A LINE L1 0 6582 1 6 1728 1640 229 53 12 chr1 149929369 149929785 -47265647 + Lx9 LINE L1 7010 7442 -202 6 1728 794 106 8 0 chr1 149930565 149930688 -47264744 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 6 1728 745 320 30 41 chr1 149930717 149930739 -47264693 + B4A SINE B4 12 31 -261 6 1728 3198 93 46 0 chr1 149930739 149931200 -47264232 - RLTR45 LTR ERVK 0 482 1 6 1728 745 320 30 41 chr1 149931200 149931447 -47263985 + B4A SINE B4 32 278 -14 6 1728 29 47 0 0 chr1 149931808 149931851 -47263581 + AT_rich Low_complexity Low_complexity 1 43 0 6 1728 885 304 53 135 chr1 149931984 149933142 -47262290 + Lx6 LINE L1 139 1202 -6526 6 1728 1638 229 41 28 chr1 149933232 149933434 -47261998 + Lx6 LINE L1 1187 1389 -4491 6 1728 6336 65 6 2 chr1 149933434 149934239 -47261193 + RLTR13C2 LTR ERVK 1 808 0 6 1728 1638 230 75 15 chr1 149934239 149934609 -47260823 + Lx6 LINE L1 1390 1787 -4093 6 1728 2922 264 6 10 chr1 149934634 149935331 -47260101 - Lx5 LINE L1 -2 7048 6355 6 1728 2925 236 72 9 chr1 149935342 149935741 -47259691 + Lx6 LINE L1 3865 4299 -1581 6 1728 333 0 0 0 chr1 149935741 149935778 -47259654 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1728 2925 236 72 9 chr1 149935778 149936363 -47259069 + Lx6 LINE L1 4300 4910 -970 6 1728 3363 237 88 46 chr1 149936389 149937478 -47257954 + Lx6 LINE L1 5605 6739 -721 6 1728 303 308 93 8 chr1 149937510 149937628 -47257804 - RSINE1 SINE B4 0 165 38 6 1728 210 194 14 27 chr1 149937628 149937702 -47257730 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1728 337 315 0 80 chr1 149937704 149937842 -47257590 + Lx6 LINE L1 5869 5995 -1465 6 1728 351 283 0 0 chr1 149937845 149937983 -47257449 + (TA)n Simple_repeat Simple_repeat 1 138 0 6 1728 2015 279 75 21 chr1 149938031 149938647 -47256785 + Lx6 LINE L1 6812 7460 0 6 1728 351 0 0 0 chr1 149938648 149938687 -47256745 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1728 345 82 0 0 chr1 149939169 149939218 -47256214 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1728 7653 66 8 2 chr1 149939643 149940840 -47254592 - L1Md_F2 LINE L1 -8 6574 5371 6 1728 1871 117 3 3 chr1 149940843 149941126 -47254306 - L1Md_F2 LINE L1 -819 5064 4782 6 1728 2204 136 23 3 chr1 149941126 149941473 -47253959 + IAPEY2_LTR LTR ERVK 1 354 -3 6 1728 2013 176 64 27 chr1 149941478 149941916 -47253516 + IAPEy-int LTR ERVK 1 454 -7059 6 1728 514 143 182 86 chr1 149942138 149942315 -47253117 + RMER16-int LTR ERVK 482 656 -4750 6 1728 487 221 88 0 chr1 149942418 149942531 -47252901 + RMER16-int LTR ERVK 938 1060 -5077 6 1728 671 230 392 39 chr1 149942544 149942766 -47252666 + IAPEy-int LTR ERVK 2454 2753 -4653 6 1728 416 89 0 0 chr1 149942792 149942848 -47252584 + IAPEy-int LTR ERVK 3567 3622 -3784 6 1728 601 64 52 21 chr1 149942847 149942943 -47252489 + IAPEy-int LTR ERVK 4567 4665 -2916 6 1728 3275 93 0 18 chr1 149943204 149943652 -47251780 + IAPEy-int LTR ERVK 5203 5642 -1939 6 1728 3397 83 0 13 chr1 149943643 149944104 -47251328 + IAPEy-int LTR ERVK 5761 6215 -1366 6 1728 5109 119 8 8 chr1 149944093 149944872 -47250560 + IAPEy-int LTR ERVK 6735 7513 0 6 1728 2165 138 23 6 chr1 149944872 149945223 -47250209 + IAPEY2_LTR LTR ERVK 1 357 0 6 26 24887 97 10 16 chr1 149945224 149949716 -47245716 - L1Md_F LINE L1 -1097 4786 325 6 1729 230 254 0 0 chr1 149949701 149949760 -47245672 - L1Md_F LINE L1 -5980 636 578 6 1729 5210 144 27 69 chr1 149950358 149951383 -47244049 + Lx3B LINE L1 5986 6967 -6 6 1729 22 70 0 0 chr1 149953186 149953229 -47242203 + AT_rich Low_complexity Low_complexity 1 43 0 6 1729 4420 201 11 16 chr1 149953263 149954194 -47241238 - Lx2B LINE L1 -5 6995 6070 6 1729 2120 177 8 3 chr1 149954884 149955264 -47240168 + L1_Mur2 LINE L1 5285 5666 -211 6 1729 641 345 61 29 chr1 149955697 149956007 -47239425 - MTE2b LTR MaLR -2 377 58 6 1729 284 269 0 49 chr1 149956022 149956104 -47239328 - MTE2b LTR MaLR -297 82 5 6 1729 24 53 0 0 chr1 149956106 149956144 -47239288 + AT_rich Low_complexity Low_complexity 1 38 0 6 1729 472 396 6 46 chr1 149956369 149956697 -47238735 + Tigger7 DNA MER2_type 121 435 -2056 6 1729 2827 204 82 22 chr1 149956765 149957438 -47237994 - RMER6D LTR ERVK -5 715 3 6 1729 537 206 161 0 chr1 149957471 149957626 -47237806 - RMER1B Other Other -4 1062 883 6 1729 5324 40 0 0 chr1 149957632 149958265 -47237167 - L1Md_T LINE L1 -1 6581 5949 6 1729 2650 49 0 0 chr1 149958265 149958594 -47236838 + L1Md_T LINE L1 5642 5970 -612 6 1729 1307 211 27 0 chr1 149958602 149958858 -47236574 - RMER1B Other Other -196 870 608 6 1729 25 65 0 0 chr1 149958916 149958962 -47236470 + AT_rich Low_complexity Low_complexity 1 46 0 6 1729 1499 214 6 13 chr1 149959112 149959429 -47236003 - RMER6C LTR ERVK 0 690 376 6 1729 356 250 0 0 chr1 149959535 149959599 -47235833 - B1_Mur3 SINE Alu -83 66 3 6 1729 530 217 9 45 chr1 149959599 149959682 -47235750 - MT2B2 LTR ERVL -325 259 181 6 1729 454 226 25 25 chr1 149960225 149960343 -47235089 - L1MDb LINE L1 -5334 1075 958 6 1729 210 174 0 0 chr1 149960525 149960571 -47234861 + T-rich Low_complexity Low_complexity 1 46 0 6 1729 230 171 0 0 chr1 149960865 149960900 -47234532 - Lx8 LINE L1 -1118 6355 6321 6 1729 38 22 0 0 chr1 149961022 149961067 -47234365 + AT_rich Low_complexity Low_complexity 1 45 0 6 1729 26 0 0 0 chr1 149961161 149961187 -47234245 + AT_rich Low_complexity Low_complexity 1 26 0 6 1729 211 73 35 52 chr1 149961264 149961322 -47234110 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1729 398 298 35 0 chr1 149961402 149961516 -47233916 + Lx9 LINE L1 6406 6523 -1121 6 1729 477 307 19 24 chr1 149961680 149961893 -47233539 + Lx9 LINE L1 6670 7024 -620 6 1729 231 152 0 0 chr1 149961892 149961938 -47233494 + Lx LINE L1 4960 5005 -878 6 1729 444 42 28 14 chr1 149961940 149962012 -47233420 + (GAA)n Simple_repeat Simple_repeat 2 74 0 6 1729 921 219 74 0 chr1 149962012 149962254 -47233178 + L1_Mur2 LINE L1 5005 5264 -613 6 1729 2522 126 5 3 chr1 149962249 149962631 -47232801 - L1Md_F2 LINE L1 -443 6139 5757 6 1729 2878 76 28 2 chr1 149962631 149963027 -47232405 + L1_Mus1 LINE L1 6160 6565 -2 6 1729 6713 140 18 7 chr1 149963040 149964418 -47231014 + Lx LINE L1 5254 6648 -6 6 1729 330 345 34 10 chr1 149964591 149964796 -47230636 + Lx9 LINE L1 7229 7438 -206 6 1729 582 104 0 0 chr1 149964824 149964920 -47230512 + (TC)n Simple_repeat Simple_repeat 2 97 0 6 1729 339 25 0 0 chr1 149965020 149965060 -47230372 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1729 258 32 0 0 chr1 149965382 149965413 -47230019 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1729 930 108 16 0 chr1 149965414 149965543 -47229889 - B1_Mm SINE Alu -12 135 5 7 1729 1320 254 72 98 chr1 149965941 149966225 -47229207 + Lx9 LINE L1 6986 7259 -385 7 1729 375 23 0 0 chr1 149966225 149966269 -47229163 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1729 627 129 0 0 chr1 149966270 149966402 -47229030 + (TA)n Simple_repeat Simple_repeat 1 132 0 7 1729 1320 254 72 98 chr1 149966402 149966791 -47228641 + Lx9 LINE L1 7260 7644 0 7 1729 22 35 0 0 chr1 149966897 149966926 -47228506 + AT_rich Low_complexity Low_complexity 1 29 0 7 1729 1056 67 0 0 chr1 149966927 149967062 -47228370 + B1_Mus1 SINE Alu 1 135 -13 7 1729 252 0 0 0 chr1 149967062 149967090 -47228342 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1729 203 240 0 20 chr1 149967354 149967405 -47228027 + GA-rich Low_complexity Low_complexity 2 51 0 7 1729 294 98 0 0 chr1 149967768 149967809 -47227623 + L1Md_F2 LINE L1 5546 5586 -297 7 1729 7625 62 3 19 chr1 149967809 149968821 -47226611 + L1Md_F2 LINE L1 5587 6582 0 7 1729 11670 174 34 90 chr1 149968821 149970886 -47224546 + Lx LINE L1 1092 2926 -2957 7 1729 3784 54 23 2 chr1 149970886 149971365 -47224067 + L1Md_F3 LINE L1 6081 6569 -15 7 1729 11670 188 38 102 chr1 149971365 149972706 -47222726 + Lx LINE L1 2927 4287 -1596 7 1729 37420 47 1 3 chr1 149972736 149978966 -47216466 - L1Md_T LINE L1 0 6585 271 7 1729 343 19 0 69 chr1 149978996 149979054 -47216378 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 7 1729 1004 116 7 0 chr1 149979054 149979201 -47216231 - B1_Mus1 SINE Alu 0 148 1 7 1729 8358 154 20 43 chr1 149979208 149981610 -47213822 + Lx LINE L1 4300 6648 -6 7 1729 1663 204 14 53 chr1 149981606 149981964 -47213468 + Lx LINE L1 5998 6341 -313 7 1729 806 211 0 0 chr1 149981964 149982202 -47213230 - RMER6D LTR ERVK -439 281 5 7 1729 273 207 0 0 chr1 149982357 149982439 -47212993 + CT-rich Low_complexity Low_complexity 2 83 0 7 1729 24 32 0 0 chr1 149982562 149982593 -47212839 + AT_rich Low_complexity Low_complexity 1 31 0 7 1729 386 347 133 18 chr1 149982610 149982836 -47212596 - Lx8 LINE L1 -205 7268 7017 7 1729 345 214 132 18 chr1 149982878 149982992 -47212440 - Lx8 LINE L1 -565 6908 6782 7 1729 191 36 0 35 chr1 149983406 149983435 -47211997 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 7 1729 379 389 52 52 chr1 149983968 149984258 -47211174 - B4A SINE B4 0 292 3 7 1729 26 0 0 0 chr1 149984684 149984710 -47210722 + AT_rich Low_complexity Low_complexity 1 26 0 7 1729 284 200 46 0 chr1 149985587 149985652 -47209780 - L1M5 LINE L1 -1560 4586 4519 7 1729 371 21 21 0 chr1 149986466 149986514 -47208918 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1729 688 302 12 0 chr1 149986517 149986686 -47208746 - B3 SINE B2 -44 172 2 7 1729 23 0 0 0 chr1 149986686 149986709 -47208723 + AT_rich Low_complexity Low_complexity 1 23 0 7 1729 21 57 0 0 chr1 149986815 149986850 -47208582 + AT_rich Low_complexity Low_complexity 1 35 0 7 1729 411 355 31 26 chr1 149987470 149987662 -47207770 + RMER15 LTR ERVL 348 537 -38 7 1729 210 37 0 0 chr1 149987662 149987689 -47207743 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1729 411 355 31 26 chr1 149987689 149987722 -47207710 + RMER15 LTR ERVL 538 573 -2 7 1729 3007 52 13 3 chr1 149987774 149988158 -47207274 + L1Md_F2 LINE L1 6195 6582 0 7 1729 553 174 80 124 chr1 149988213 149988403 -47207029 + ORR1C1 LTR MaLR 1 144 -234 7 1729 241 197 164 0 chr1 149988381 149988442 -47206990 + ORR1C1 LTR MaLR 305 375 -3 7 1729 408 209 24 134 chr1 149988729 149988754 -47206678 + MT2B LTR ERVL 145 155 -446 7 1729 949 151 0 0 chr1 149988754 149988900 -47206532 + B1_Mus1 SINE Alu 2 147 -1 7 1729 289 345 77 32 chr1 149989017 149989448 -47205984 + L1_Mur3 LINE L1 3703 4156 -1984 7 1729 274 361 79 39 chr1 149989534 149989661 -47205771 + B4A SINE B4 11 142 -150 7 1729 766 299 134 36 chr1 149989663 149990020 -47205412 + Lx7 LINE L1 6462 6853 -843 7 1729 323 340 0 14 chr1 149990054 149990200 -47205232 - Lx6 LINE L1 -26 7434 7291 7 1729 26 64 0 0 chr1 149990390 149990437 -47204995 + AT_rich Low_complexity Low_complexity 1 47 0 7 1729 21 0 0 0 chr1 149991752 149991773 -47203659 + AT_rich Low_complexity Low_complexity 1 21 0 7 1729 347 264 132 28 chr1 149992846 149993095 -47202337 + MER33 DNA MER1_type 38 312 -12 7 1729 180 270 77 31 chr1 149993709 149993774 -47201658 + L3 LINE CR1 921 988 -3501 7 1729 594 343 76 4 chr1 149994163 149994400 -47201032 - B4A SINE B4 -21 271 18 7 1729 380 324 20 0 chr1 149995583 149995685 -47199747 - B3A SINE B2 -88 110 7 7 1729 299 327 142 26 chr1 149995814 149996090 -47199342 - Lx8 LINE L1 -992 6481 6181 7 1729 482 70 14 0 chr1 149996090 149996161 -47199271 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 7 1729 299 327 142 26 chr1 149996161 149996186 -47199246 - Lx8 LINE L1 -1293 6180 6145 7 1729 22 35 0 0 chr1 149996482 149996511 -47198921 + AT_rich Low_complexity Low_complexity 1 29 0 7 1729 31 44 0 0 chr1 149997014 149997059 -47198373 + AT_rich Low_complexity Low_complexity 1 45 0 7 1729 22 35 0 0 chr1 149997288 149997317 -47198115 + AT_rich Low_complexity Low_complexity 1 29 0 7 1729 782 241 0 62 chr1 149997339 149997477 -47197955 - Lx7 LINE L1 0 7696 7563 7 1729 1028 153 5 11 chr1 149997477 149997662 -47197770 + B2_Mm2 SINE B2 2 185 -10 7 1729 782 241 0 62 chr1 149997662 149997766 -47197666 - Lx7 LINE L1 -134 7562 7469 7 1729 920 197 31 40 chr1 149997773 149997995 -47197437 + L1_Mur3 LINE L1 2662 2881 -2999 7 1729 5725 15 0 0 chr1 149997993 149998690 -47196742 - L1Md_A LINE L1 -346 6236 5540 7 1729 3078 22 0 0 chr1 149998690 149999049 -47196383 + L1Md_A LINE L1 6224 6582 0 7 1729 603 169 188 0 chr1 149999049 149999152 -47196280 + L1_Mur3 LINE L1 2868 2971 -2909 7 1729 249 108 0 0 chr1 149999152 149999189 -47196243 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1729 603 169 188 0 chr1 149999189 149999245 -47196187 + L1_Mur3 LINE L1 2972 3056 -2824 7 1729 7112 113 24 14 chr1 150000329 150001817 -47193615 + L1_Mus4 LINE L1 5160 6635 -1 1 1729 423 38 0 0 chr1 150002061 150002114 -47193318 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1729 22 70 0 0 chr1 150002239 150002282 -47193150 + AT_rich Low_complexity Low_complexity 1 43 0 3 1729 23 54 0 0 chr1 150002524 150002561 -47192871 + AT_rich Low_complexity Low_complexity 1 37 0 4 1729 286 263 92 96 chr1 150002613 150002859 -47192573 - L1MA4 LINE L1 -236 6055 5802 5 1729 270 95 0 0 chr1 150002860 150002902 -47192530 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1729 393 22 0 0 chr1 150003101 150003147 -47192285 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1729 892 207 31 155 chr1 150003724 150004079 -47191353 - RLTRETN_Mm LTR ERVK 0 322 12 8 1729 241 250 36 0 chr1 150004910 150004966 -47190466 - RSINE1 SINE B4 0 165 108 9 1729 2153 165 5 43 chr1 150005347 150005745 -47189687 - Lx3B LINE L1 0 6973 6591 1 1729 372 22 0 0 chr1 150005798 150005843 -47189589 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1729 1342 112 40 4 chr1 150005865 150006090 -47189342 + L1_Mus4 LINE L1 6386 6618 -18 1 1729 2748 75 0 11 chr1 150006093 150006472 -47188960 + L1_Mus2 LINE L1 6191 6565 -1 1 1729 444 221 42 0 chr1 150006829 150006924 -47188508 + ORR1A2 LTR MaLR 93 191 -136 1 1729 462 132 0 0 chr1 150006965 150007033 -47188399 - MT2B2 LTR ERVL -383 201 134 1 1729 4220 163 16 3 chr1 150006973 150007713 -47187719 - ORR1A2-int LTR MaLR -1206 757 8 1 1729 1386 197 21 21 chr1 150007720 150008010 -47187422 - ORR1A2 LTR MaLR 0 327 38 1 1729 1738 197 5 56 chr1 150008010 150008423 -47187009 + Lx LINE L1 6263 6654 0 1 1729 741 176 7 34 chr1 150008423 150008570 -47186862 + L1_Mur2 LINE L1 5092 5234 -643 1 1729 571 237 6 19 chr1 150008916 150009075 -47186357 + Lx4A LINE L1 6898 7054 -4 1 1729 24 0 0 0 chr1 150009466 150009490 -47185942 + AT_rich Low_complexity Low_complexity 1 24 0 2 1729 244 220 45 18 chr1 150011874 150011985 -47183447 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1729 1681 70 273 0 chr1 150012065 150012346 -47183086 - L1_Mus1 LINE L1 -1 6566 6209 2 1729 552 95 0 0 chr1 150013127 150013211 -47182221 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1729 7641 76 8 4 chr1 150014049 150015381 -47180051 - L1Md_F2 LINE L1 0 6582 5244 2 1729 567 0 0 0 chr1 150015381 150015444 -47179988 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1729 6401 102 19 4 chr1 150015444 150015744 -47179688 - L1Md_F2 LINE L1 -640 5243 4937 2 1729 2838 33 0 3 chr1 150015744 150016082 -47179350 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1729 19088 17 2 3 chr1 150016082 150018249 -47177183 - IAPEz-int LTR ERVK 0 6481 4317 2 1729 23679 35 37 13 chr1 150018248 150021171 -47174261 - IAPEz-int LTR ERVK -3480 3001 8 2 1729 2838 33 0 3 chr1 150021171 150021509 -47173923 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1729 12409 95 2 1 chr1 150021509 150023272 -47172160 - L1Md_F2 LINE L1 -942 4941 3176 2 1729 1170 69 6 18 chr1 150023270 150023410 -47172022 + L1_Mm LINE L1 5447 5586 -297 2 1729 7748 54 2 8 chr1 150023410 150024400 -47171032 + L1Md_F2 LINE L1 5587 6570 -12 2 1729 1170 69 6 18 chr1 150024400 150024422 -47171010 + L1_Mm LINE L1 5587 5606 -277 2 1729 468 0 0 0 chr1 150024440 150024492 -47170940 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1729 3361 114 25 67 chr1 150025030 150025631 -47169801 - L1_Mus3 LINE L1 -9 6629 6054 3 1729 1320 158 49 21 chr1 150025797 150026081 -47169351 - Lx5 LINE L1 -1011 6039 5748 3 1729 787 125 7 7 chr1 150026135 150026272 -47169160 + (TTC)n Simple_repeat Simple_repeat 2 138 0 3 1729 528 122 0 0 chr1 150027664 150027746 -47167686 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1729 1673 270 19 104 chr1 150028030 150028131 -47167301 - Lx6 LINE L1 -155 7305 7207 3 1729 985 96 0 0 chr1 150028131 150028267 -47167165 + B1_Mus1 SINE Alu 1 136 -12 3 1729 1673 270 19 104 chr1 150028267 150028694 -47166738 - Lx6 LINE L1 -254 7206 6822 3 1729 250 327 19 9 chr1 150028707 150028812 -47166620 + GA-rich Low_complexity Low_complexity 3 108 0 3 1729 430 307 7 41 chr1 150030777 150030923 -47164509 + Lx9 LINE L1 6488 6628 -1016 3 1729 222 91 0 0 chr1 150031075 150031108 -47164324 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1729 1316 301 92 2 chr1 150031284 150031750 -47163682 - Lx6 LINE L1 0 7460 6953 3 1729 5562 81 12 20 chr1 150032001 150032624 -47162808 - Lx3_Mus LINE L1 -468 6541 5923 4 1729 180 0 0 0 chr1 150032624 150032644 -47162788 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1729 5562 81 12 20 chr1 150032644 150032824 -47162608 - Lx3_Mus LINE L1 -1087 5922 5744 4 1729 3363 83 17 0 chr1 150032824 150033292 -47162140 + Lx3_Mus LINE L1 6527 7002 -7 4 1729 186 43 0 0 chr1 150033352 150033375 -47162057 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1729 225 94 0 0 chr1 150033492 150033524 -47161908 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 4 1729 438 302 77 58 chr1 150033910 150034184 -47161248 - Lx6 LINE L1 -5 7455 7177 4 1729 708 284 85 51 chr1 150034358 150034770 -47160662 - Lx9 LINE L1 -161 7483 7058 4 1729 780 291 38 14 chr1 150035009 150035298 -47160134 - Lx6 LINE L1 -1187 6273 5978 4 1729 232 336 39 0 chr1 150035280 150035408 -47160024 + Lx6 LINE L1 7301 7433 -27 4 1729 461 276 16 0 chr1 150035432 150035555 -47159877 + B1_Mur3 SINE Alu 25 149 0 4 1729 22 0 0 0 chr1 150036177 150036199 -47159233 + AT_rich Low_complexity Low_complexity 1 22 0 4 1729 587 138 18 0 chr1 150036289 150036398 -47159034 + (TATG)n Simple_repeat Simple_repeat 2 112 0 5 1729 240 86 0 0 chr1 150037134 150037169 -47158263 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1729 3148 37 3 0 chr1 150037206 150037587 -47157845 - L1Md_T LINE L1 -2 6580 6199 5 1729 2970 59 8 0 chr1 150037780 150038167 -47157265 + L1Md_F2 LINE L1 6193 6582 0 5 1729 8002 182 15 7 chr1 150038864 150040496 -47154936 - Lx LINE L1 -1636 4250 2605 5 1729 7889 172 21 14 chr1 150040495 150042855 -47152577 + Lx LINE L1 4267 6646 -8 5 1729 24 0 0 0 chr1 150043036 150043060 -47152372 + AT_rich Low_complexity Low_complexity 1 24 0 5 1729 5636 123 22 4 chr1 150043200 150043417 -47152015 - L1_Mur1 LINE L1 -383 5503 5285 5 1729 297 68 0 0 chr1 150043417 150043461 -47151971 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1729 5636 123 22 4 chr1 150043461 150044175 -47151257 - L1_Mur1 LINE L1 -602 5284 4556 5 1729 7931 122 45 28 chr1 150044173 150045613 -47149819 + Lx3A LINE L1 5508 6969 -12 5 1729 623 245 107 5 chr1 150046009 150046214 -47149218 + URR1A DNA MER1_type 1 226 0 5 1729 1185 348 77 25 chr1 150047271 150048007 -47147425 + Lx8 LINE L1 6564 7338 -135 6 1729 499 343 68 4 chr1 150048449 150048698 -47146734 - Lx8 LINE L1 -673 6800 6536 6 1729 1867 158 9 34 chr1 150048835 150049162 -47146270 - ORR1A2 LTR MaLR -8 319 1 6 1729 3262 33 38 0 chr1 150049540 150049936 -47145496 - IAPLTR2a LTR ERVK 0 411 1 6 1729 23 0 0 0 chr1 150050987 150051010 -47144422 + AT_rich Low_complexity Low_complexity 1 23 0 6 1729 835 293 53 91 chr1 150051053 150051699 -47143733 - Lx5 LINE L1 -24 7436 6443 6 1729 723 217 6 29 chr1 150051721 150051892 -47143540 + Lx5 LINE L1 5765 5931 -1119 6 1729 414 0 0 0 chr1 150052266 150052312 -47143120 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1729 23 68 0 0 chr1 150052468 150052512 -47142920 + AT_rich Low_complexity Low_complexity 1 44 0 6 1729 354 139 0 0 chr1 150052670 150052742 -47142690 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1729 1716 58 0 5 chr1 150052884 150053108 -47142324 + L1Md_F3 LINE L1 6346 6568 -16 7 1729 2314 275 40 23 chr1 150053201 150053730 -47141702 - Lx6 LINE L1 -30 7430 6896 7 1729 303 113 0 0 chr1 150053730 150053783 -47141649 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1729 2314 275 40 23 chr1 150053783 150053911 -47141521 - Lx6 LINE L1 -565 6895 6763 7 1729 451 151 21 0 chr1 150053921 150054014 -47141418 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1729 421 297 0 0 chr1 150054016 150054134 -47141298 - Lx6 LINE L1 -718 6742 6625 7 1729 6400 180 30 25 chr1 150055304 150058067 -47137365 + Lx LINE L1 3960 6651 -3 7 1729 262 357 23 23 chr1 150058067 150058196 -47137236 - MTEb LTR MaLR -42 337 209 7 1729 754 304 32 61 chr1 150058204 150058484 -47136948 + Lx5 LINE L1 6776 7047 -3 7 1729 584 387 75 20 chr1 150058771 150059409 -47136023 + Lx8 LINE L1 6767 7439 -34 7 1729 33 56 0 0 chr1 150059411 150059465 -47135967 + AT_rich Low_complexity Low_complexity 1 54 0 7 1729 37795 44 0 2 chr1 150059465 150065685 -47129747 - L1Md_T LINE L1 0 6585 285 7 1729 372 22 0 0 chr1 150065756 150065801 -47129631 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1729 21 36 0 0 chr1 150066208 150066236 -47129196 + AT_rich Low_complexity Low_complexity 1 28 0 8 1729 8972 2 0 1 chr1 150067445 150069113 -47126319 - L1Md_A LINE L1 0 6582 4917 8 1729 249 370 37 37 chr1 150070105 150070293 -47125139 + MIRb SINE MIR 75 262 -6 8 1729 270 56 0 0 chr1 150070460 150070496 -47124936 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1729 3574 216 128 49 chr1 150070504 150071780 -47123652 + L1_Mur3 LINE L1 1450 2827 -3053 8 1729 2107 233 67 8 chr1 150071770 150072402 -47123030 + L1_Mur3 LINE L1 3548 4216 -1664 8 1729 1491 251 71 0 chr1 150072394 150072745 -47122687 + Lx6 LINE L1 6747 7122 -338 8 1729 393 198 0 0 chr1 150072789 150072870 -47122562 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1729 339 232 21 21 chr1 150072928 150073025 -47122407 + Lx6 LINE L1 7355 7451 -9 8 1729 206 0 69 0 chr1 150074388 150074417 -47121015 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8 1729 731 242 62 62 chr1 150074636 150074985 -47120447 + RLTR10D LTR ERVK 1 411 0 8 1729 4063 65 6 4 chr1 150075380 150075902 -47119530 + L1Md_F2 LINE L1 6047 6569 -13 9 1729 1025 331 87 15 chr1 150076240 150077020 -47118412 - L1MA9 LINE L1 -75 6237 5402 9 216 641 342 62 55 chr1 150077102 150077650 -47117782 - L1MA9 LINE L1 -857 5286 4735 9 1730 828 186 0 0 chr1 150077659 150077831 -47117601 + (TA)n Simple_repeat Simple_repeat 1 172 0 9 1730 30 0 0 0 chr1 150077839 150077869 -47117563 + AT_rich Low_complexity Low_complexity 1 30 0 9 1730 24 0 0 0 chr1 150078631 150078655 -47116777 + AT_rich Low_complexity Low_complexity 1 24 0 9 1730 305 305 98 53 chr1 150079049 150079579 -47115853 - L1MA7 LINE L1 -391 5900 5347 9 1730 568 329 117 40 chr1 150080091 150080149 -47115283 - L1MA7 LINE L1 -1207 4936 4879 9 1730 4362 125 21 15 chr1 150080149 150080866 -47114566 + Lx LINE L1 5934 6654 0 9 1730 568 329 117 40 chr1 150080866 150081304 -47114128 - L1MA7 LINE L1 -1265 4878 4402 9 1730 1807 243 77 39 chr1 150081392 150082155 -47113277 - L1_Rod LINE L1 -1937 3910 3119 9 1730 534 302 38 47 chr1 150082287 150082627 -47112805 + RLTR15 LTR ERVK 3 339 -20 9 1730 253 125 18 18 chr1 150082792 150082849 -47112583 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 1730 22 56 0 0 chr1 150083105 150083141 -47112291 + AT_rich Low_complexity Low_complexity 1 36 0 1 1730 363 388 67 11 chr1 150084680 150084860 -47110572 + B4 SINE B4 21 210 -82 1 1730 24 67 0 0 chr1 150084973 150085018 -47110414 + AT_rich Low_complexity Low_complexity 1 45 0 1 1730 539 183 118 18 chr1 150085028 150085169 -47110263 + B1_Mur3 SINE Alu 1 145 -2 1 1730 27 0 0 0 chr1 150085169 150085196 -47110236 + AT_rich Low_complexity Low_complexity 1 27 0 1 1730 2217 295 40 42 chr1 150085240 150086145 -47109287 + Lx9 LINE L1 6388 7290 -354 1 1730 395 255 104 26 chr1 150086193 150086414 -47109018 + RMER4B LTR ERVK 343 585 0 1 1730 203 245 0 0 chr1 150086415 150086468 -47108964 + CT-rich Low_complexity Low_complexity 2 54 0 1 1730 1198 157 0 20 chr1 150086647 150086849 -47108583 - Lx2 LINE L1 -653 6344 6147 1 1730 3685 154 3 36 chr1 150086849 150087521 -47107911 + Lx2 LINE L1 6348 6997 0 1 1730 528 16 0 0 chr1 150088432 150088493 -47106939 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1730 2810 159 7 9 chr1 150088510 150088968 -47106464 + RLTR21 LTR ERVK 1 457 -1115 1 1730 539 115 0 0 chr1 150088963 150089041 -47106391 + RLTR21 LTR ERVK 1379 1456 -116 1 1730 293 159 0 16 chr1 150089196 150089260 -47106172 + (CTA)n Simple_repeat Simple_repeat 1 63 0 1 1730 225 0 0 0 chr1 150090976 150091001 -47104431 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1730 5043 139 42 21 chr1 150091776 150092647 -47102785 - Lx3B LINE L1 -4 6969 6080 1 1730 312 120 0 0 chr1 150092938 150092988 -47102444 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1730 294 348 54 68 chr1 150093772 150094200 -47101232 + L1M6 LINE L1 464 885 -5611 1 1730 510 259 172 54 chr1 150095307 150095475 -47099957 - ORR1D1 LTR MaLR 0 374 183 1 1730 198 0 0 0 chr1 150095475 150095497 -47099935 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1730 1080 101 6 11 chr1 150095497 150095676 -47099756 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1730 510 259 172 54 chr1 150095676 150095837 -47099595 - ORR1D1 LTR MaLR -192 182 6 1 1730 985 213 99 55 chr1 150095841 150096134 -47099298 - ORR1D1-int LTR MaLR 0 1370 1065 1 1730 5531 141 14 9 chr1 150097144 150098032 -47097400 + Lx2 LINE L1 6106 6997 0 1 1730 3705 142 26 2 chr1 150098041 150098648 -47096784 - L1_Mus3 LINE L1 -240 5643 5022 1 1730 6365 120 14 3 chr1 150098646 150099605 -47095827 + L1_Mus3 LINE L1 5668 6636 -2 1 1730 31880 84 9 40 chr1 150099790 150104480 -47090952 - L1Md_F2 LINE L1 0 6582 1978 1 1730 357 43 0 0 chr1 150104480 150104527 -47090905 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1730 31880 111 21 33 chr1 150104527 150106316 -47089116 - L1Md_F2 LINE L1 -3906 1977 277 1 1730 651 289 57 26 chr1 150107350 150107577 -47087855 + RCHARR1 DNA MER1_type 10 243 -731 1 1730 1244 228 186 65 chr1 150107821 150108327 -47087105 - RMER2 LTR ERV1 0 567 1 1 1730 180 0 0 0 chr1 150109057 150109077 -47086355 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1730 297 0 0 0 chr1 150109077 150109110 -47086322 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1730 22 35 0 0 chr1 150109207 150109236 -47086196 + AT_rich Low_complexity Low_complexity 1 29 0 1 1730 295 351 85 37 chr1 150109642 150109914 -47085518 - L1M4 LINE L1 -5947 595 311 1 1730 198 91 0 0 chr1 150111358 150111391 -47084041 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1730 1158 82 0 0 chr1 150111391 150111538 -47083894 - B1_Mus2 SINE Alu 0 147 1 1 1730 329 302 0 11 chr1 150111541 150111628 -47083804 + B3A SINE B2 58 143 -55 1 1730 211 91 0 64 chr1 150111798 150111845 -47083587 + A-rich Low_complexity Low_complexity 2 45 0 1 1730 22 35 0 0 chr1 150112371 150112400 -47083032 + AT_rich Low_complexity Low_complexity 1 29 0 1 1730 264 30 0 0 chr1 150113763 150113796 -47081636 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 1730 302 306 71 18 chr1 150113814 150113927 -47081505 - MTEa LTR MaLR -70 309 191 1 1730 22 0 0 0 chr1 150115340 150115362 -47080070 + AT_rich Low_complexity Low_complexity 1 22 0 1 1730 535 236 114 0 chr1 150115910 150116033 -47079399 - MTD LTR MaLR -14 405 269 1 1730 258 366 16 24 chr1 150116095 150116221 -47079211 - MTD LTR MaLR -155 264 140 1 1730 270 132 0 0 chr1 150116221 150116274 -47079158 + (TTTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1730 371 274 20 88 chr1 150116281 150116429 -47079003 - MTD LTR MaLR -276 143 6 1 1730 282 298 21 21 chr1 150116767 150116863 -47078569 + PB1D9 SINE Alu 24 119 -1 1 1730 21 82 0 0 chr1 150117037 150117086 -47078346 + AT_rich Low_complexity Low_complexity 1 49 0 1 1730 21 0 0 0 chr1 150117158 150117179 -47078253 + AT_rich Low_complexity Low_complexity 1 21 0 1 1730 7545 72 3 11 chr1 150117297 150117852 -47077580 - L1Md_F2 LINE L1 -1 6581 6034 1 1730 2105 96 135 11 chr1 150117852 150118199 -47077233 - RLTR10 LTR ERVK 0 390 1 1 1730 7545 74 3 6 chr1 150118199 150119261 -47076171 - L1Md_F2 LINE L1 -549 6033 4971 1 1730 1406 101 0 0 chr1 150119266 150119473 -47075959 + L1_Mm LINE L1 3952 4158 -1725 1 1730 2344 100 0 0 chr1 150119469 150119800 -47075632 + L1_Mm LINE L1 4643 4973 -910 1 1730 588 350 54 18 chr1 150119800 150120024 -47075408 - B4 SINE B4 -55 237 6 1 1730 387 0 0 0 chr1 150120269 150120312 -47075120 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1730 23 0 0 0 chr1 150120566 150120589 -47074843 + AT_rich Low_complexity Low_complexity 1 23 0 1 1730 235 282 115 0 chr1 150121040 150121118 -47074314 + MER2 DNA MER2_type 98 184 -161 1 1730 2672 14 4 212 chr1 150121232 150121695 -47073737 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1730 7939 65 90 90 chr1 150121695 150123001 -47072431 + IAPEz-int LTR ERVK 8 1313 -5168 1 1730 28830 21 1 1 chr1 150123000 150126274 -47069158 + IAPEz-int LTR ERVK 3210 6481 0 1 1730 2685 11 4 212 chr1 150126274 150126737 -47068695 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1730 271 359 164 46 chr1 150127406 150127777 -47067655 + Tigger7 DNA MER2_type 39 453 -2038 1 1730 268 225 34 0 chr1 150128210 150128299 -47067133 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1730 739 211 71 14 chr1 150128942 150129129 -47066303 + ORR1B1 LTR MaLR 1 179 -215 1 1730 22 0 0 0 chr1 150129304 150129326 -47066106 + AT_rich Low_complexity Low_complexity 1 22 0 1 1730 269 197 16 0 chr1 150129329 150129390 -47066042 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1730 467 355 75 40 chr1 150129437 150129689 -47065743 - B4A SINE B4 -24 268 8 1 1730 21 0 0 0 chr1 150131034 150131055 -47064377 + AT_rich Low_complexity Low_complexity 1 21 0 1 1730 1204 134 15 5 chr1 150132443 150132646 -47062786 - Lx3B LINE L1 -5 6968 6764 1 1730 582 352 73 26 chr1 150133096 150133601 -47061831 - Lx8 LINE L1 -250 7223 6695 1 1730 243 309 12 0 chr1 150133614 150133698 -47061734 - Lx8 LINE L1 -1028 6445 6361 1 1730 1016 139 0 11 chr1 150134434 150134616 -47060816 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1730 386 167 0 12 chr1 150134625 150134710 -47060722 + CT-rich Low_complexity Low_complexity 4 87 0 1 1730 679 231 8 0 chr1 150135060 150135194 -47060238 + B1_Mur2 SINE Alu 9 143 -6 1 1730 284 264 14 0 chr1 150135194 150135266 -47060166 + GA-rich Low_complexity Low_complexity 1 73 0 1 1730 265 314 65 122 chr1 150135273 150135487 -47059945 - Charlie2b DNA MER1_type -651 2131 1930 1 1730 1390 247 18 55 chr1 150136150 150136531 -47058901 - ORR1B2 LTR MaLR 0 367 1 1 1730 245 186 0 33 chr1 150136838 150136899 -47058533 + Lx9 LINE L1 7524 7582 -62 1 1730 47 33 0 0 chr1 150138031 150138092 -47057340 + AT_rich Low_complexity Low_complexity 1 61 0 1 1730 652 292 69 26 chr1 150138378 150138638 -47056794 + MTD LTR MaLR 20 329 -90 1 1730 477 0 0 0 chr1 150138644 150138697 -47056735 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 1 1730 1093 214 67 17 chr1 150138739 150139107 -47056325 - Lx5 LINE L1 -1358 6102 5758 1 1730 2311 208 24 65 chr1 150139107 150139692 -47055740 - RLTR31_Mm LTR ERVK 0 561 1 1 1730 3346 175 30 3 chr1 150139698 150140334 -47055098 - Lx5 LINE L1 -124 5753 5101 1 1730 210 171 0 0 chr1 150141025 150141060 -47054372 + T-rich Low_complexity Low_complexity 1 35 0 1 1730 234 0 0 0 chr1 150141485 150141511 -47053921 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1730 1333 79 6 0 chr1 150141536 150141713 -47053719 + B2_Mm1a SINE B2 2 179 -14 1 1730 23 0 0 0 chr1 150142004 150142027 -47053405 + AT_rich Low_complexity Low_complexity 1 23 0 1 1730 476 167 23 4 chr1 150142307 150142415 -47053017 + B1_Mus2 SINE Alu 2 114 -6 1 1730 325 410 89 37 chr1 150142418 150142823 -47052609 - MTE-int LTR MaLR -340 1240 815 1 1730 37976 32 0 1 chr1 150143166 150149483 -47045949 - L1Md_T LINE L1 0 6585 176 1 1730 219 25 24 48 chr1 150149658 150149700 -47045732 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1730 315 49 0 0 chr1 150149878 150149919 -47045513 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1730 297 404 34 15 chr1 150149951 150150157 -47045275 - MTE-int LTR MaLR -1308 272 63 1 1730 622 24 12 12 chr1 150150445 150150530 -47044902 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1730 315 71 0 0 chr1 150151804 150151846 -47043586 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1730 24 0 0 0 chr1 150151974 150151998 -47043434 + AT_rich Low_complexity Low_complexity 1 24 0 1 1730 3286 129 23 37 chr1 150152230 150152793 -47042639 - Lx LINE L1 -4 6650 6096 1 1730 1096 106 101 0 chr1 150152793 150152972 -47042460 + Lx LINE L1 5882 6078 -576 1 1730 835 306 3 24 chr1 150153444 150153735 -47041697 - L1VL4 LINE L1 -5673 629 345 1 1730 297 296 25 34 chr1 150153801 150153920 -47041512 - Lx7 LINE L1 -17 7679 7562 1 1730 333 186 0 0 chr1 150153982 150154052 -47041380 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1730 1324 205 271 3 chr1 150154154 150154463 -47040969 + Lx3C LINE L1 6581 6972 -4 1 1730 1096 267 73 47 chr1 150154476 150154844 -47040588 - Lx7 LINE L1 -366 7330 6949 1 1730 1859 190 74 3 chr1 150154844 150155208 -47040224 - ORR1B1 LTR MaLR 0 394 5 1 1730 1096 267 73 47 chr1 150155208 150155248 -47040184 - Lx7 LINE L1 -748 6948 6911 1 1730 292 150 64 27 chr1 150155256 150155366 -47040066 + (TATAA)n Simple_repeat Simple_repeat 5 118 0 1 1730 22 35 0 0 chr1 150155780 150155809 -47039623 + AT_rich Low_complexity Low_complexity 1 29 0 1 1730 749 263 51 40 chr1 150155861 150156114 -47039318 + Lx8 LINE L1 6333 6588 -885 1 1730 290 257 118 9 chr1 150156304 150156414 -47039018 + Lx8 LINE L1 6824 6945 -528 1 1730 3733 262 31 100 chr1 150157201 150157593 -47037839 - Lx7 LINE L1 -9 7687 7370 1 1730 459 0 0 0 chr1 150157593 150157644 -47037788 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1730 3733 262 31 100 chr1 150157644 150158696 -47036736 - Lx7 LINE L1 -327 7369 6342 1 1730 1839 224 63 101 chr1 150158746 150159086 -47036346 - Lx7 LINE L1 -1608 6088 5720 1 1730 2999 73 2 8 chr1 150159086 150159484 -47035948 - MTA_Mm LTR MaLR 0 396 1 1 1730 1839 193 35 139 chr1 150159484 150159981 -47035451 - Lx7 LINE L1 -161 5719 5296 1 1730 4034 216 62 4 chr1 150159997 150161320 -47034112 - Lx5 LINE L1 -8 7042 5604 1 1730 1020 235 59 26 chr1 150161318 150161659 -47033773 - Lx5 LINE L1 -583 5297 4946 1 1730 3171 74 80 5 chr1 150161667 150162116 -47033316 - L1Md_F2 LINE L1 -2 6580 6098 1 1730 4142 29 0 0 chr1 150162124 150162607 -47032825 + L1Md_F2 LINE L1 5657 6139 -443 1 1730 3171 209 47 30 chr1 150162604 150163439 -47031993 - Lx5 LINE L1 -920 4960 4112 1 1730 983 234 42 45 chr1 150163437 150163724 -47031708 - RMER1B Other Other -5 1061 776 1 1730 581 250 123 58 chr1 150163724 150163775 -47031657 - RMER6B LTR ERVK -149 312 264 1 1730 183 42 0 0 chr1 150163775 150163799 -47031633 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 1730 581 250 123 58 chr1 150163799 150164040 -47031392 - RMER6B LTR ERVK -198 263 1 1 1730 22 0 0 0 chr1 150164454 150164476 -47030956 + AT_rich Low_complexity Low_complexity 1 22 0 2 1730 32 0 0 0 chr1 150164666 150164698 -47030734 + AT_rich Low_complexity Low_complexity 1 32 0 2 1730 21 36 0 0 chr1 150165268 150165296 -47030136 + AT_rich Low_complexity Low_complexity 1 28 0 2 1730 25 95 0 0 chr1 150165344 150165418 -47030014 + AT_rich Low_complexity Low_complexity 1 74 0 2 1730 548 305 25 63 chr1 150165581 150165819 -47029613 + Lx9 LINE L1 6959 7187 -457 2 1730 263 336 40 40 chr1 150165835 150165984 -47029448 + Lx9 LINE L1 7249 7397 -247 2 1730 624 81 0 0 chr1 150166039 150166126 -47029306 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 1730 219 152 0 0 chr1 150166721 150166767 -47028665 + CT-rich Low_complexity Low_complexity 2 47 0 2 1730 231 61 0 0 chr1 150166770 150166803 -47028629 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1730 357 336 13 13 chr1 150166811 150166965 -47028467 - Lx8 LINE L1 -359 7114 6961 2 1730 601 300 40 0 chr1 150166918 150167118 -47028314 + Lx8 LINE L1 6799 7006 -467 2 1730 552 42 0 0 chr1 150167708 150167779 -47027653 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1730 1024 220 59 50 chr1 150168158 150168497 -47026935 - L1_Mur2 LINE L1 -3267 2610 2269 2 1730 819 196 89 34 chr1 150168512 150168781 -47026651 + Lx5 LINE L1 3173 3456 -2421 2 1730 555 209 9 9 chr1 150168786 150168897 -47026535 + RMER6B LTR ERVK 6 116 -345 2 1730 2741 233 76 12 chr1 150168969 150169427 -47026005 + Lx5 LINE L1 4349 4839 -1038 2 1730 312 48 0 0 chr1 150169427 150169469 -47025963 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1730 2741 233 76 12 chr1 150169469 150169839 -47025593 + Lx5 LINE L1 4840 5230 -647 2 1730 21 0 0 0 chr1 150169839 150169860 -47025572 + AT_rich Low_complexity Low_complexity 1 21 0 2 1730 252 217 17 0 chr1 150169870 150169930 -47025502 + Lx5 LINE L1 5771 5831 -1219 2 1730 4480 134 10 3 chr1 150171250 150171953 -47023479 + Lx3A LINE L1 6267 6974 -7 2 1730 30 45 0 0 chr1 150172014 150172058 -47023374 + AT_rich Low_complexity Low_complexity 1 44 0 2 1730 2326 268 197 21 chr1 150172124 150172993 -47022439 - RMER1A Other Other -2 1028 7 2 1730 1256 293 68 61 chr1 150173006 150173789 -47021643 - RMER1B Other Other -553 513 1 2 1730 246 207 0 0 chr1 150174552 150174610 -47020822 + A-rich Low_complexity Low_complexity 1 58 0 2 1730 27 62 0 0 chr1 150174665 150174713 -47020719 + AT_rich Low_complexity Low_complexity 1 48 0 2 1730 191 182 22 43 chr1 150175161 150175207 -47020225 - MIRb SINE MIR -47 221 177 2 1730 381 224 66 22 chr1 150175541 150175678 -47019754 + Lx9 LINE L1 7495 7637 -7 2 1730 33 43 0 0 chr1 150175875 150175922 -47019510 + AT_rich Low_complexity Low_complexity 1 47 0 2 1730 222 245 0 0 chr1 150176325 150176374 -47019058 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1730 576 65 0 0 chr1 150176551 150176628 -47018804 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1730 2367 187 155 93 chr1 150176733 150177445 -47017987 - RMER6A LTR ERVK 0 756 1 2 1730 589 292 39 19 chr1 150177709 150178041 -47017391 - L1M2 LINE L1 -553 5759 5401 2 1730 309 51 0 0 chr1 150178073 150178112 -47017320 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1730 28 29 0 0 chr1 150178427 150178462 -47016970 + AT_rich Low_complexity Low_complexity 1 35 0 2 1730 22 0 0 0 chr1 150178568 150178590 -47016842 + AT_rich Low_complexity Low_complexity 1 22 0 2 1730 356 258 37 7 chr1 150178594 150178723 -47016709 - L1_Mm LINE L1 -1369 4511 4382 2 1730 291 28 0 0 chr1 150178723 150178759 -47016673 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1730 317 290 123 22 chr1 150178759 150178897 -47016535 - L1_Mm LINE L1 -1499 4381 4217 2 1730 309 82 0 0 chr1 150178904 150178953 -47016479 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1730 1677 171 19 43 chr1 150178972 150179296 -47016136 + ORR1A2 LTR MaLR 1 316 -11 2 1730 35195 46 0 3 chr1 150179537 150184743 -47010689 + L1Md_T LINE L1 305 5591 -295 2 1730 7440 54 4 76 chr1 150184745 150185814 -47009618 + L1Md_T LINE L1 5594 6585 0 2 1730 207 0 0 0 chr1 150185858 150185881 -47009551 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1730 4807 42 0 0 chr1 150185881 150186459 -47008973 + L1Md_T LINE L1 6004 6581 -1 2 1730 581 373 41 13 chr1 150187623 150187941 -47007491 - MTEa LTR MaLR -2 377 51 2 1730 3555 138 7 2 chr1 150187941 150188531 -47006901 - L1_Mus2 LINE L1 -814 5069 4477 2 1730 4953 147 51 19 chr1 150188511 150189991 -47005441 + L1_Mus2 LINE L1 5042 6566 0 2 1730 4501 117 8 14 chr1 150190097 150190763 -47004669 - L1_Mus4 LINE L1 -119 6517 5856 2 1730 5309 158 50 4 chr1 150190765 150191713 -47003719 + Lx3B LINE L1 5983 6973 0 2 1730 218 56 0 27 chr1 150191719 150191756 -47003676 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 1730 21 0 0 0 chr1 150192332 150192353 -47003079 + AT_rich Low_complexity Low_complexity 1 21 0 2 1730 31 44 0 0 chr1 150192722 150192767 -47002665 + AT_rich Low_complexity Low_complexity 1 45 0 2 1730 1651 268 89 33 chr1 150193028 150193577 -47001855 + RMER13A LTR ERVK 68 647 -213 2 1730 410 301 44 4 chr1 150194230 150194457 -47000975 - L1MA8 LINE L1 0 6291 6056 2 1730 349 255 45 7 chr1 150194727 150194881 -47000551 - Lx9 LINE L1 -1 7643 7484 2 1730 243 152 0 0 chr1 150194891 150194937 -47000495 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1730 724 236 39 10 chr1 150194948 150195153 -47000279 - Lx9 LINE L1 -150 7494 7284 2 1730 5329 68 1 6 chr1 150195268 150195952 -46999480 - L1Md_F2 LINE L1 -4 6578 5898 2 1730 1811 115 60 19 chr1 150195952 150196270 -46999162 - IAPEY_LTR LTR ERVK 0 385 55 2 1730 1919 84 15 11 chr1 150196270 150196536 -46998896 - IAPEY3-int LTR ERVK 0 7680 7414 2 1730 31850 60 8 0 chr1 150196536 150200509 -46994923 - IAPEY3-int LTR ERVK -408 7272 3269 2 1730 1820 146 40 18 chr1 150200532 150200861 -46994571 - IAPEY_LTR LTR ERVK 0 385 50 2 1730 2097 91 0 3 chr1 150200861 150201149 -46994283 - L1Md_F2 LINE L1 -684 5898 5612 2 1730 1010 114 0 0 chr1 150202654 150202794 -46992638 + B1_Mus1 SINE Alu 2 141 -7 2 1730 22 0 0 0 chr1 150202796 150202818 -46992614 + AT_rich Low_complexity Low_complexity 1 22 0 2 1730 289 273 40 0 chr1 150203107 150203206 -46992226 + L1M2 LINE L1 4601 4703 -1440 2 1730 348 285 40 37 chr1 150203321 150203537 -46991895 + RMER1C Other Other 140 223 -1119 2 1730 249 57 0 0 chr1 150203547 150203582 -46991850 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1730 1614 313 38 61 chr1 150203808 150204411 -46991021 + RMER1C Other Other 383 971 -371 2 1730 8696 81 8 3 chr1 150204602 150205798 -46989634 + L1Md_F2 LINE L1 4384 5585 -298 2 1730 7419 77 1 11 chr1 150205799 150206803 -46988629 + L1Md_F2 LINE L1 5587 6580 -2 2 1730 1578 186 18 58 chr1 150206901 150207243 -46988189 - ORR1A4 LTR MaLR 0 329 2 2 1730 572 262 130 11 chr1 150207315 150207500 -46987932 + MTD LTR MaLR 213 419 0 2 1730 330 315 98 0 chr1 150207513 150207697 -46987735 - L1M2 LINE L1 -3350 2793 2592 2 1730 522 0 0 0 chr1 150208230 150208288 -46987144 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1730 204 118 0 0 chr1 150208288 150208317 -46987115 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1731 266 330 54 38 chr1 150209131 150209317 -46986115 + Lx9 LINE L1 7283 7471 -173 2 1731 1620 199 22 11 chr1 150209332 150209687 -46985745 - L1_Mur2 LINE L1 -1604 4276 3918 2 1731 22 0 0 0 chr1 150209714 150209736 -46985696 + AT_rich Low_complexity Low_complexity 1 22 0 2 1731 353 258 0 66 chr1 150209752 150209889 -46985543 - Lx4B LINE L1 -67 6991 6864 2 1731 1146 252 45 16 chr1 150209948 150210017 -46985415 - L1_Mur2 LINE L1 -4141 1739 1664 2 1731 1335 51 0 11 chr1 150210017 150210196 -46985236 - L1Md_F2 LINE L1 -13 6569 6393 2 1731 1146 252 45 16 chr1 150210196 150210238 -46985194 - L1_Mur2 LINE L1 -4217 1663 1616 2 1731 375 0 55 0 chr1 150210238 150210293 -46985139 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 2 1731 1060 94 0 0 chr1 150210293 150210431 -46985001 - B1_Mus1 SINE Alu -10 138 1 2 1731 1146 252 45 16 chr1 150210431 150210761 -46984671 - L1_Mur2 LINE L1 -4265 1615 1285 2 1731 3623 18 123 0 chr1 150210763 150211202 -46984230 - MT2_Mm LTR ERVL 0 493 1 2 1731 314 0 0 0 chr1 150211202 150211240 -46984192 - MERVL-int LTR ERVL 0 5485 5448 2 1731 392 167 46 35 chr1 150211240 150211327 -46984105 - ORR1A3-int LTR MaLR -1323 640 553 2 1731 47354 15 8 0 chr1 150211327 150216647 -46978785 - MERVL-int LTR ERVL -125 5360 1 2 1731 4374 12 2 0 chr1 150216647 150217139 -46978293 - MT2_Mm LTR ERVL 0 493 1 2 1731 411 156 0 0 chr1 150217148 150217238 -46978194 - L1_Mur2 LINE L1 -6452 1276 1187 2 1731 4629 106 34 10 chr1 150217442 150218150 -46977282 + L1_Mus3 LINE L1 5914 6638 0 2 1731 593 81 63 0 chr1 150218438 150218549 -46976883 + (TTTTC)n Simple_repeat Simple_repeat 3 120 0 2 1731 945 70 19 83 chr1 150218551 150218708 -46976724 - B1_Mm SINE Alu 0 147 1 2 1731 266 367 59 39 chr1 150221347 150221500 -46973932 + RSINE1 SINE B4 8 163 -2 2 1731 24 32 0 0 chr1 150221526 150221557 -46973875 + AT_rich Low_complexity Low_complexity 1 31 0 2 1731 2760 168 16 23 chr1 150223193 150223749 -46971683 - L1_Mus4 LINE L1 -1386 4497 3946 2 1731 2524 152 22 15 chr1 150223747 150224202 -46971230 + L1_Mus4 LINE L1 4479 4936 -947 2 1731 5686 109 5 4 chr1 150224202 150225036 -46970396 - L1Md_F2 LINE L1 -4 6578 5744 2 1731 3169 67 0 0 chr1 150225036 150225437 -46969995 + L1Md_F2 LINE L1 5341 5741 -142 2 1731 1778 221 0 0 chr1 150225434 150225809 -46969623 + L1_Mur1 LINE L1 4926 5300 -586 2 1731 38401 8 0 1 chr1 150225815 150231810 -46963622 + L1Md_A LINE L1 1 5586 -297 2 1731 8971 4 0 0 chr1 150231810 150232806 -46962626 + L1Md_A LINE L1 5587 6582 0 2 1731 5876 139 30 10 chr1 150232807 150234056 -46961376 + L1_Mus4 LINE L1 5296 6582 0 2 1731 424 267 9 19 chr1 150234165 150234272 -46961160 - MTD LTR MaLR -300 119 14 2 1731 207 182 0 0 chr1 150235741 150235774 -46959658 + T-rich Low_complexity Low_complexity 3 35 0 2 1731 576 0 0 0 chr1 150235886 150235950 -46959482 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1731 4293 116 11 16 chr1 150235952 150236618 -46958814 - L1_Mus4 LINE L1 -7 6629 5968 2 1731 312 343 84 0 chr1 150237367 150237510 -46957922 - HAL1-3A_ME LINE L1 -730 2128 1974 2 1731 307 231 51 13 chr1 150237641 150237720 -46957712 - Lx8 LINE L1 -265 7208 7127 2 1731 2303 104 39 0 chr1 150237768 150238106 -46957326 - L1_Mus4 LINE L1 -7 6629 6279 2 1731 946 286 26 64 chr1 150238112 150238456 -46956976 - Lx8 LINE L1 -342 7131 6801 2 1731 962 254 82 55 chr1 150238457 150238907 -46956525 + RMER2 LTR ERV1 2 563 -4 2 1731 273 75 0 0 chr1 150239746 150239786 -46955646 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1731 672 13 0 0 chr1 150239788 150239865 -46955567 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1731 639 103 0 0 chr1 150240161 150240258 -46955174 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 2 1731 1209 261 101 33 chr1 150240700 150241179 -46954253 - RLTR26 LTR ERVK -101 541 4 2 1731 2894 39 6 0 chr1 150241161 150241518 -46953914 - MTA_Mm LTR MaLR 0 396 38 2 1731 278 119 0 0 chr1 150241577 150241619 -46953813 - MTA_Mm LTR MaLR -354 42 1 2 1731 497 267 88 7 chr1 150241777 150241924 -46953508 + Lx5 LINE L1 6846 7004 -46 2 1731 8077 50 0 2 chr1 150242197 150243370 -46952062 - L1Md_F2 LINE L1 -1 6581 5411 2 1731 198 254 35 35 chr1 150243576 150243633 -46951799 + L2c LINE L2 3122 3178 -209 2 1731 349 137 82 0 chr1 150244075 150244148 -46951284 + L1MA4 LINE L1 5791 5869 -431 2 1731 270 0 0 0 chr1 150244469 150244499 -46950933 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 1731 1124 71 0 0 chr1 150244501 150244641 -46950791 - B1_Mm SINE Alu -6 141 2 3 1731 234 0 0 0 chr1 150244641 150244667 -46950765 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1731 1534 273 102 93 chr1 150244724 150245576 -46949856 - RMER13A LTR ERVK 0 860 1 3 1731 301 294 149 11 chr1 150245924 150246186 -46949246 + L1M2 LINE L1 4798 5095 -1048 3 1731 342 296 176 36 chr1 150246293 150246848 -46948584 + L1M2 LINE L1 5235 5870 -430 3 1731 24 32 0 0 chr1 150248055 150248086 -46947346 + AT_rich Low_complexity Low_complexity 1 31 0 3 1731 1602 294 72 6 chr1 150248086 150248561 -46946871 - Lx6 LINE L1 -159 7301 6796 3 1731 1014 219 15 35 chr1 150248571 150248831 -46946601 - L1_Mur3 LINE L1 -16 5864 5610 3 1731 912 182 0 0 chr1 150248831 150249007 -46946425 + (TA)n Simple_repeat Simple_repeat 2 177 0 3 1731 2571 193 25 85 chr1 150249007 150249680 -46945752 - L1_Mur3 LINE L1 -283 5597 4965 3 1731 2200 199 55 21 chr1 150249676 150250204 -46945228 + L1_Mur3 LINE L1 4181 4726 -1154 3 1731 743 306 65 91 chr1 150250199 150250392 -46945040 - Lx8 LINE L1 -410 7063 6883 3 1731 1011 103 7 0 chr1 150250392 150250538 -46944894 + B1_Mm SINE Alu 1 147 0 3 1731 743 306 65 91 chr1 150250538 150250593 -46944839 - Lx8 LINE L1 -591 6882 6847 3 1731 548 14 14 0 chr1 150250593 150250662 -46944770 + (GAAAA)n Simple_repeat Simple_repeat 3 72 0 3 1731 743 306 65 91 chr1 150250662 150250952 -46944480 - Lx8 LINE L1 -627 6846 6539 3 1731 472 243 6 6 chr1 150251139 150251309 -46944123 + (TA)n Simple_repeat Simple_repeat 1 170 0 3 1731 270 0 0 0 chr1 150251359 150251389 -46944043 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1731 191 32 65 0 chr1 150252111 150252142 -46943290 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 3 1731 6120 67 1 4 chr1 150252148 150252948 -46942484 - L1Md_F2 LINE L1 -2 6580 5783 3 1731 12850 62 1 1 chr1 150253047 150255388 -46940044 - L1Md_F2 LINE L1 -12 6570 4231 3 1731 1825 260 5 5 chr1 150256563 150256969 -46938463 - MTC LTR MaLR -15 406 1 3 1731 362 158 0 31 chr1 150258338 150258401 -46937031 + T-rich Low_complexity Low_complexity 34 95 0 3 1731 1167 82 0 0 chr1 150258401 150258548 -46936884 - B1_Mus1 SINE Alu 0 148 2 3 1731 362 158 0 31 chr1 150258548 150258582 -46936850 + T-rich Low_complexity Low_complexity 1 33 0 3 1731 204 40 0 0 chr1 150258678 150258703 -46936729 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1731 1086 229 15 209 chr1 150259027 150259491 -46935941 + ORR1D1 LTR MaLR 1 374 0 3 1731 10333 120 26 54 chr1 150259628 150260569 -46934863 + L1Md_F LINE L1 412 1373 -4510 3 1731 886 109 0 8 chr1 150260569 150260698 -46934734 + B1_Mm SINE Alu 17 144 -3 3 1731 10333 120 26 54 chr1 150260698 150262231 -46933201 + L1Md_F LINE L1 1374 2942 -2941 3 1731 3543 94 0 0 chr1 150262231 150262707 -46932725 + L1_Mus2 LINE L1 6090 6565 -1 3 1731 306 0 0 0 chr1 150262728 150262762 -46932670 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1731 3181 104 37 23 chr1 150262762 150263276 -46932156 + Lx3_Mus LINE L1 5788 6308 -701 3 1731 3171 273 30 41 chr1 150263247 150264201 -46931231 + Lx5 LINE L1 6101 7044 -6 3 1731 27 87 0 0 chr1 150265568 150265637 -46929795 + AT_rich Low_complexity Low_complexity 1 69 0 3 1731 34 42 0 0 chr1 150265770 150265818 -46929614 + AT_rich Low_complexity Low_complexity 1 48 0 3 1731 907 330 20 74 chr1 150266419 150266769 -46928663 - ORR1E LTR MaLR 0 359 29 3 1731 248 263 0 50 chr1 150266820 150266900 -46928532 + CT-rich Low_complexity Low_complexity 3 78 0 3 1731 777 22 0 0 chr1 150267128 150267219 -46928213 + (GAAA)n Simple_repeat Simple_repeat 1 91 0 3 1731 1050 82 0 0 chr1 150267283 150267429 -46928003 + (TTTTC)n Simple_repeat Simple_repeat 3 148 0 3 1731 3721 174 49 13 chr1 150267430 150268178 -46927254 - Lx3C LINE L1 -5 6971 6144 3 1731 230 0 33 0 chr1 150268208 150268238 -46927194 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1731 251 381 0 0 chr1 150269221 150269339 -46926093 + RMER15-int LTR ERVL 1066 1183 -3816 3 1731 269 293 41 57 chr1 150269921 150270044 -46925388 + RMER15-int LTR ERVL 2004 2124 -2875 3 1731 230 226 48 0 chr1 150270798 150270860 -46924572 - RMER5 LTR ERV1 0 534 470 3 1731 308 342 94 26 chr1 150270915 150271182 -46924250 - L1M2 LINE L1 -3055 3088 2804 3 1731 1121 69 7 0 chr1 150271322 150271467 -46923965 + B1_Mm SINE Alu 2 147 0 3 1731 207 0 0 0 chr1 150271469 150271492 -46923940 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1731 573 88 0 0 chr1 150271707 150271787 -46923645 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 1731 362 312 43 47 chr1 150271787 150272019 -46923413 + L1MA6 LINE L1 5817 6047 -253 3 1731 266 19 54 54 chr1 150272343 150272399 -46923033 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 3 1731 271 277 8 63 chr1 150273434 150273487 -46921945 + polypurine Low_complexity Low_complexity 4 57 0 3 1731 1044 46 0 0 chr1 150273487 150273617 -46921815 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 3 1731 271 277 8 63 chr1 150273617 150273690 -46921742 + polypurine Low_complexity Low_complexity 58 123 0 3 1731 28 61 0 0 chr1 150273870 150273919 -46921513 + AT_rich Low_complexity Low_complexity 1 49 0 3 1731 248 288 82 33 chr1 150274002 150274124 -46921308 + L1MA7 LINE L1 5990 6117 -174 3 1731 274 381 23 19 chr1 150274158 150274372 -46921060 + ID_B1 SINE B4 2 216 -8 3 1731 25 65 0 0 chr1 150274671 150274717 -46920715 + AT_rich Low_complexity Low_complexity 1 46 0 3 1731 26 82 0 0 chr1 150275316 150275377 -46920055 + AT_rich Low_complexity Low_complexity 1 61 0 3 1731 23 0 0 0 chr1 150275396 150275419 -46920013 + AT_rich Low_complexity Low_complexity 1 23 0 3 1731 493 138 0 0 chr1 150275639 150275719 -46919713 - L1_Mur1 LINE L1 -1254 4623 4544 3 1731 5818 186 20 27 chr1 150275715 150276913 -46918519 + L1_Mur1 LINE L1 4697 5886 0 3 1731 2382 183 78 2 chr1 150276937 150277386 -46918046 + Lx2B LINE L1 6518 7000 0 3 1731 3841 135 33 11 chr1 150278055 150278698 -46916734 - Lx3B LINE L1 -1 6972 6316 3 1731 1227 237 30 106 chr1 150279595 150280124 -46915308 - Lx7 LINE L1 -97 7599 7111 3 1731 583 281 42 6 chr1 150280130 150280298 -46915134 + Lx8 LINE L1 6821 6994 -479 3 1731 291 294 104 40 chr1 150280313 150280515 -46914917 + L1M3 LINE L1 4845 5059 -821 3 1731 6812 100 35 8 chr1 150280517 150282010 -46913422 - L1_Mus2 LINE L1 0 6566 5030 3 1731 415 293 41 25 chr1 150281990 150282186 -46913246 + L1_Rod LINE L1 4994 5192 -655 3 1731 540 211 10 0 chr1 150282187 150282291 -46913141 - B1_Mur4 SINE Alu -45 105 1 3 1731 479 268 82 18 chr1 150282313 150282484 -46912948 + MTEa LTR MaLR 197 378 -1 3 1731 4903 62 5 8 chr1 150282870 150283519 -46911913 - L1Md_F2 LINE L1 -12 6570 5924 3 1731 259 106 21 0 chr1 150283520 150283567 -46911865 + L1_Mm LINE L1 2777 2824 -3059 3 1731 2474 34 2 256 chr1 150283688 150284211 -46911221 - RLTR10 LTR ERVK 0 390 1 3 1731 373 114 19 28 chr1 150284462 150284570 -46910862 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 3 1731 646 355 31 31 chr1 150285263 150285551 -46909881 - B4 SINE B4 0 292 5 3 1731 298 401 25 0 chr1 150286644 150286806 -46908626 + B4A SINE B4 127 292 0 3 1731 204 238 0 0 chr1 150286823 150286865 -46908567 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 3 1731 2128 262 58 81 chr1 150287880 150288007 -46907425 + Lx7 LINE L1 6676 6796 -900 3 1731 865 123 72 0 chr1 150288007 150288145 -46907287 + B1_Mus1 SINE Alu 1 148 0 3 1731 2128 262 58 81 chr1 150288145 150288846 -46906586 + Lx7 LINE L1 6797 7485 -211 3 1731 4401 253 48 17 chr1 150289219 150290305 -46905127 - Lx5 LINE L1 -46 7004 5885 3 1731 487 138 45 11 chr1 150290425 150290513 -46904919 - RLTR21 LTR ERVK -924 648 558 3 1731 207 0 0 0 chr1 150290590 150290613 -46904819 + (TTCTC)n Simple_repeat Simple_repeat 3 25 0 3 1731 1058 135 0 6 chr1 150290613 150290791 -46904641 + (TCCCC)n Simple_repeat Simple_repeat 1 178 0 3 1731 588 168 29 7 chr1 150290791 150290929 -46904503 + CT-rich Low_complexity Low_complexity 4 144 0 3 1731 3338 169 2 7 chr1 150290995 150291538 -46903894 - RLTR21 LTR ERVK -991 581 42 3 1731 13128 187 26 42 chr1 150291598 150292178 -46903254 - L1_Mur2 LINE L1 0 5877 5287 3 1731 2018 162 3 16 chr1 150292178 150292548 -46902884 - Lx2 LINE L1 0 6997 6633 3 1731 13128 187 26 42 chr1 150292548 150293178 -46902254 - L1_Mur2 LINE L1 -591 5286 4645 3 1731 184 30 29 29 chr1 150293178 150293212 -46902220 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 1731 13128 187 26 42 chr1 150293212 150294728 -46900704 - L1_Mur2 LINE L1 -1233 4644 3197 3 1731 2771 90 23 3 chr1 150294728 150295116 -46900316 - MTA_Mm LTR MaLR -4 396 1 3 1731 6786 110 6 76 chr1 150295116 150296297 -46899135 - MTA_Mm-int LTR MaLR 0 1098 1 3 1731 2839 91 5 5 chr1 150296297 150296693 -46898739 - MTA_Mm LTR MaLR 0 396 1 3 1731 13128 187 26 42 chr1 150296693 150296927 -46898505 - L1_Mur2 LINE L1 -2681 3196 2963 3 1731 890 265 95 69 chr1 150296927 150297391 -46898041 + RMER2 LTR ERV1 1 540 -27 3 1731 3158 192 111 4 chr1 150297417 150298148 -46897284 - L1_Mur2 LINE L1 -2914 2963 2155 3 1731 22 0 0 0 chr1 150299590 150299612 -46895820 + AT_rich Low_complexity Low_complexity 1 22 0 3 1731 351 307 58 85 chr1 150301589 150301813 -46893619 - MLT1J-int LTR MaLR -603 784 567 3 1731 23 78 0 0 chr1 150302181 150302232 -46893200 + AT_rich Low_complexity Low_complexity 1 51 0 3 1731 207 0 0 0 chr1 150302469 150302492 -46892940 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1731 257 320 59 39 chr1 150302601 150302754 -46892678 - RMER15 LTR ERVL -145 430 275 3 1731 318 231 21 154 chr1 150302789 150302932 -46892500 - RMER15 LTR ERVL -451 124 1 3 1731 455 307 78 69 chr1 150302984 150303330 -46892102 - RMER15-int LTR ERVL -116 4883 4535 3 1731 251 276 10 20 chr1 150303349 150303449 -46891983 - Lx6 LINE L1 -8 7452 7354 3 1731 894 351 35 6 chr1 150303450 150303797 -46891635 - RMER15-int LTR ERVL -484 4515 4159 3 1731 2852 33 0 3 chr1 150303888 150304226 -46891206 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1731 55954 25 6 6 chr1 150304226 150310702 -46884730 - IAPEz-int LTR ERVK 0 6481 8 3 1731 2865 30 0 3 chr1 150310702 150311040 -46884392 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1731 409 321 15 15 chr1 150311150 150311286 -46884146 - RMER15-int LTR ERVL -1047 3952 3817 3 1731 2350 338 59 38 chr1 150311662 150313046 -46882386 - RMER15-int LTR ERVL -3399 1600 187 3 1731 343 342 23 18 chr1 150313174 150313414 -46882018 - RMER15 LTR ERVL -18 557 291 3 1731 205 161 0 0 chr1 150313517 150313563 -46881869 + (CATTT)n Simple_repeat Simple_repeat 1 46 0 3 1731 2987 198 31 21 chr1 150313563 150313701 -46881731 - Lx4B LINE L1 -3 7055 6927 3 1731 2428 109 3 65 chr1 150313701 150314084 -46881348 - RLTR10D LTR ERVK 0 359 1 3 1731 2987 198 31 21 chr1 150314084 150314555 -46880877 - Lx4B LINE L1 -132 6926 6440 3 1731 1508 163 55 16 chr1 150314579 150314890 -46880542 + Lx4A LINE L1 6048 6370 -688 3 1731 206 121 0 0 chr1 150314986 150315019 -46880413 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1731 313 320 0 30 chr1 150315373 150315505 -46879927 + GA-rich Low_complexity Low_complexity 1 128 0 3 1731 1310 0 7 0 chr1 150315561 150315711 -46879721 + (GGGAGA)n Simple_repeat Simple_repeat 2 152 0 3 1731 1442 28 72 0 chr1 150315764 150315924 -46879508 + B2_Mm1a SINE B2 1 160 -33 3 1731 351 0 0 0 chr1 150315924 150315963 -46879469 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 1731 1442 28 72 0 chr1 150315963 150315982 -46879450 + B2_Mm1a SINE B2 161 192 -1 3 1731 1996 224 120 19 chr1 150316187 150316814 -46878618 + RMER6C LTR ERVK 1 690 0 3 1731 22 0 0 0 chr1 150316997 150317019 -46878413 + AT_rich Low_complexity Low_complexity 1 22 0 4 1731 3406 43 0 5 chr1 150317067 150317488 -46877944 - L1Md_F3 LINE L1 -12 6572 6154 4 1731 720 161 140 7 chr1 150317488 150317638 -46877794 - ORR1B2 LTR MaLR -195 172 3 4 1731 213 65 0 0 chr1 150318206 150318237 -46877195 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1731 373 299 29 15 chr1 150318554 150318690 -46876742 + B1F1 SINE Alu 5 142 -7 4 1731 258 105 0 0 chr1 150319130 150319168 -46876264 + (CATA)n Simple_repeat Simple_repeat 3 40 0 4 1731 231 297 14 0 chr1 150319966 150320107 -46875325 + (CATATA)n Simple_repeat Simple_repeat 1 142 0 4 1731 22 70 0 0 chr1 150320462 150320505 -46874927 + AT_rich Low_complexity Low_complexity 1 43 0 4 1731 618 285 210 16 chr1 150320610 150320920 -46874512 + ORR1D2 LTR MaLR 1 370 0 4 1731 183 268 105 18 chr1 150321066 150321123 -46874309 + MIRm SINE MIR 129 190 -86 4 1731 450 0 0 0 chr1 150321461 150321511 -46873921 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 4 1731 1252 329 97 43 chr1 150321642 150322515 -46872917 - Lx8 LINE L1 -2 7471 6552 4 1731 291 327 44 0 chr1 150322539 150322652 -46872780 - Lx8 LINE L1 -979 6494 6377 4 1731 27 62 0 0 chr1 150323461 150323509 -46871923 + AT_rich Low_complexity Low_complexity 1 48 0 4 1731 277 261 14 0 chr1 150323766 150323835 -46871597 + Lx9 LINE L1 6765 6834 -810 4 1731 592 313 25 25 chr1 150324296 150324535 -46870897 - Lx9 LINE L1 -341 7303 7065 4 1731 504 236 200 29 chr1 150325499 150325669 -46869763 + MTC LTR MaLR 13 211 -210 4 1731 2735 145 0 20 chr1 150325669 150326127 -46869305 - Lx3B LINE L1 -594 6379 5931 4 1731 1679 181 10 7 chr1 150326242 150326542 -46868890 + RLTR41 LTR ERV1 146 446 0 4 1731 763 119 104 7 chr1 150326542 150326677 -46868755 - Lx3B LINE L1 -1043 5933 5786 4 1731 3089 185 12 5 chr1 150326677 150327265 -46868167 + Lx3B LINE L1 6380 6971 -2 4 1731 183 80 0 0 chr1 150327269 150327294 -46868138 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1731 1002 241 9 4 chr1 150327294 150327519 -46867913 + MTC LTR MaLR 196 421 0 4 1731 22 0 0 0 chr1 150327830 150327852 -46867580 + AT_rich Low_complexity Low_complexity 1 22 0 4 1731 504 0 0 0 chr1 150327856 150327912 -46867520 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1731 1095 231 119 54 chr1 150327919 150328237 -46867195 + Lx9 LINE L1 7090 7451 -193 4 1731 4182 123 136 63 chr1 150328237 150329078 -46866354 + RLTR13D6 LTR ERVK 1 902 0 4 1731 1095 231 119 54 chr1 150329078 150329280 -46866152 + Lx9 LINE L1 7452 7644 0 4 1731 297 169 0 0 chr1 150329588 150329647 -46865785 + A-rich Low_complexity Low_complexity 1 59 0 4 1731 432 0 0 0 chr1 150331343 150331391 -46864041 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1731 22 35 0 0 chr1 150332020 150332049 -46863383 + AT_rich Low_complexity Low_complexity 1 29 0 4 1731 261 57 0 0 chr1 150332096 150332131 -46863301 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1731 268 345 80 70 chr1 150332257 150332584 -46862848 + Lx9 LINE L1 7093 7422 -222 4 1731 3129 14 5 5 chr1 150332585 150332952 -46862480 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1731 7374 67 122 85 chr1 150332952 150334211 -46861221 + IAPEz-int LTR ERVK 8 1313 -5168 4 1731 28993 18 1 1 chr1 150334210 150337484 -46857948 + IAPEz-int LTR ERVK 3210 6481 0 4 1731 3129 14 5 5 chr1 150337484 150337851 -46857581 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1731 459 35 0 0 chr1 150337918 150337975 -46857457 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1731 560 352 39 24 chr1 150338412 150338793 -46856639 - Lx7 LINE L1 -483 7213 6827 4 1731 504 294 31 22 chr1 150338794 150339030 -46856402 - Lx9 LINE L1 -1663 5981 5760 4 1731 210 204 20 0 chr1 150339043 150339092 -46856340 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1731 257 237 35 9 chr1 150339140 150339255 -46856177 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 1731 297 333 0 0 chr1 150339272 150339359 -46856073 - Lx8 LINE L1 -928 6545 6459 4 1731 593 289 34 13 chr1 150339346 150339584 -46855848 + L1_Mur3 LINE L1 4852 5094 -786 4 1732 1612 164 12 57 chr1 150339609 150339944 -46855488 + ORR1A4 LTR MaLR 2 321 -8 4 1732 207 0 0 0 chr1 150339976 150339999 -46855433 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1732 180 0 0 0 chr1 150340177 150340197 -46855235 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1732 735 345 51 91 chr1 150340522 150341073 -46854359 + MT2A LTR ERVL 3 531 -2 4 1732 348 24 0 0 chr1 150341906 150341947 -46853485 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1732 579 15 0 0 chr1 150341950 150342018 -46853414 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1732 432 264 47 13 chr1 150343203 150343353 -46852079 - Lx5 LINE L1 -4 7046 6892 4 1732 831 50 8 0 chr1 150343690 150343809 -46851623 + L1Md_A LINE L1 6463 6582 0 4 1732 704 249 112 91 chr1 150343846 150344133 -46851299 + MT2A LTR ERVL 3 295 -238 4 1732 2680 308 46 36 chr1 150344166 150345158 -46850274 + ORR1D-int LTR MaLR 128 1129 -241 4 1732 1571 223 32 14 chr1 150345158 150345504 -46849928 - ORR1B1 LTR MaLR -2 392 41 4 1732 403 273 0 18 chr1 150345504 150345616 -46849816 + ORR1D-int LTR MaLR 1251 1360 -149 4 1732 249 279 49 0 chr1 150346066 150346127 -46849305 + ORR1D-int LTR MaLR 1204 1267 -103 4 1732 4426 112 25 10 chr1 150346275 150346953 -46848479 + Lx LINE L1 5966 6653 -1 4 1732 4536 106 24 0 chr1 150346984 150347664 -46847768 + L1_Mus3 LINE L1 5941 6636 -2 4 1732 744 302 42 5 chr1 150347676 150347869 -46847563 + B4A SINE B4 5 204 -88 4 1732 1747 235 98 5 chr1 150347913 150348461 -46846971 + Lx4B LINE L1 6297 6921 -79 4 1732 264 59 0 0 chr1 150348492 150348526 -46846906 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1732 468 349 0 90 chr1 150349407 150349596 -46845836 + B3A SINE B2 5 176 -22 4 1732 23 68 0 0 chr1 150349658 150349702 -46845730 + AT_rich Low_complexity Low_complexity 1 44 0 4 1732 768 258 47 36 chr1 150349932 150350185 -46845247 - Lx6 LINE L1 -26 7434 7179 4 1732 1979 107 30 69 chr1 150350189 150350521 -46844911 - ORR1A2 LTR MaLR -8 319 1 4 1732 664 311 78 6 chr1 150350529 150350905 -46844527 - Lx5 LINE L1 -584 6876 6455 4 1732 292 359 98 28 chr1 150352086 150352301 -46843131 - MER2 DNA MER2_type -1 344 115 4 1732 570 268 102 12 chr1 150353592 150353792 -46841640 + ORR1D1 LTR MaLR 102 370 -4 4 1732 621 143 48 0 chr1 150354709 150354814 -46840618 - Lx LINE L1 -717 5937 5828 4 1732 3441 136 27 4 chr1 150354814 150355367 -46840065 - Lx LINE L1 0 6654 6089 4 1732 1288 143 3 3 chr1 150355367 150355590 -46839842 - Lx LINE L1 -666 5988 5762 4 1732 884 98 8 0 chr1 150356728 150356861 -46838571 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 4 1732 250 164 32 127 chr1 150357769 150357832 -46837600 + B1_Mur4 SINE Alu 87 143 -7 4 1732 23 0 0 0 chr1 150358369 150358392 -46837040 + AT_rich Low_complexity Low_complexity 1 23 0 4 1732 2007 210 68 7 chr1 150358820 150359246 -46836186 + RLTR11A LTR ERVK 2 453 -75 4 1732 258 194 0 0 chr1 150359316 150359378 -46836054 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1732 222 37 0 0 chr1 150359526 150359553 -46835879 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 4 1732 237 308 19 19 chr1 150359579 150359741 -46835691 - Lx7 LINE L1 -285 7411 7250 4 1732 456 19 0 0 chr1 150359766 150359819 -46835613 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1732 429 54 0 0 chr1 150359819 150359874 -46835558 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1732 11501 72 9 5 chr1 150359875 150361666 -46833766 - L1Md_F2 LINE L1 -33 6549 4738 4 1732 2459 83 0 9 chr1 150361666 150362008 -46833424 - L1Md_F2 LINE L1 0 6582 6244 4 1732 11501 76 18 1 chr1 150362008 150362463 -46832969 - L1Md_F2 LINE L1 -1146 4737 4283 4 1732 25 31 0 0 chr1 150362477 150362509 -46832923 + AT_rich Low_complexity Low_complexity 1 32 0 4 1732 37833 30 0 0 chr1 150362857 150369492 -46825940 - L1Md_T LINE L1 0 6585 1 4 1732 1750 227 21 30 chr1 150369537 150369606 -46825826 - Lx9 LINE L1 -7 7637 7567 4 1732 2384 179 227 37 chr1 150369606 150370367 -46825065 + RMER17A2 LTR ERVK 1 906 0 4 1732 1750 227 21 30 chr1 150370367 150370431 -46825001 - Lx9 LINE L1 -78 7566 7513 4 1732 468 77 0 0 chr1 150370431 150370496 -46824936 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1732 1750 227 21 30 chr1 150370496 150370834 -46824598 - Lx9 LINE L1 -132 7512 7169 4 1732 2412 254 21 35 chr1 150370831 150371484 -46823948 + Lx9 LINE L1 6369 7012 -632 4 1732 34645 80 3 7 chr1 150371934 150378108 -46817324 - L1Md_F3 LINE L1 -8 6576 437 4 1732 571 60 24 0 chr1 150378539 150378623 -46816809 + (TC)n Simple_repeat Simple_repeat 2 87 0 4 1732 280 378 19 75 chr1 150379586 150379634 -46815798 - MER70A LTR ERVL -11 461 415 4 1732 713 307 106 26 chr1 150379634 150379975 -46815457 + ORR1D2 LTR MaLR 1 368 -2 4 1732 280 378 19 75 chr1 150379975 150380086 -46815346 - MER70A LTR ERVL -58 414 311 4 1732 405 0 0 0 chr1 150380737 150380782 -46814650 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1732 1516 97 14 5 chr1 150382234 150382451 -46812981 - MTB LTR MaLR 0 400 182 4 1732 305 362 58 0 chr1 150382456 150382594 -46812838 - L1M5 LINE L1 -2962 3184 3039 4 1732 3102 102 24 0 chr1 150382596 150383047 -46812385 - Lx3_Mus LINE L1 -8 7001 6540 4 1732 1114 92 126 0 chr1 150383050 150383224 -46812208 - MTB LTR MaLR -204 196 1 4 1732 213 39 0 0 chr1 150383705 150383731 -46811701 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4 1732 21 0 0 0 chr1 150384373 150384394 -46811038 + AT_rich Low_complexity Low_complexity 1 21 0 4 1732 33 0 0 0 chr1 150384515 150384548 -46810884 + AT_rich Low_complexity Low_complexity 1 33 0 4 1732 7789 123 28 12 chr1 150384604 150386658 -46808774 + Lx3A LINE L1 316 2409 -3477 4 1732 2442 113 101 5 chr1 150386662 150387106 -46808326 + Lx3A LINE L1 2864 3350 -2536 4 1732 1663 127 39 3 chr1 150387102 150387387 -46808045 + Lx3A LINE L1 4322 4616 -1270 4 1732 6786 102 105 9 chr1 150387418 150389245 -46806187 - L1_Mus2 LINE L1 0 6566 4519 4 1732 37895 30 0 0 chr1 150389241 150395453 -46799979 - L1Md_T LINE L1 0 6585 277 4 1732 2668 113 5 0 chr1 150395452 150395860 -46799572 - Lx3A LINE L1 -1348 4535 4126 4 1732 4120 124 17 1 chr1 150395859 150396523 -46798909 + Lx3A LINE L1 4602 5275 -611 4 1732 2821 85 3 0 chr1 150396563 150396950 -46798482 - L1_Mm LINE L1 -1255 4628 4241 4 1732 6175 75 0 11 chr1 150396950 150397781 -46797651 + L1Md_F2 LINE L1 5759 6580 -2 4 1732 7024 143 28 15 chr1 150397781 150399072 -46796360 + Lx3A LINE L1 5297 6608 -373 4 1732 2594 82 9 3 chr1 150399072 150399416 -46796016 + ORR1A1 LTR MaLR 1 346 0 4 1732 7024 160 43 23 chr1 150399416 150399764 -46795668 + Lx3A LINE L1 6609 6961 -20 4 1732 2774 80 5 13 chr1 150400006 150400399 -46795033 + L1_Mus3 LINE L1 6247 6636 -2 4 1732 34959 47 1 3 chr1 150400406 150405612 -46789820 + L1Md_T LINE L1 298 5589 -297 4 1732 8192 43 1 0 chr1 150405612 150406607 -46788825 + L1Md_T LINE L1 5590 6585 0 4 1732 939 71 6 13 chr1 150406887 150407043 -46788389 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 4 1732 356 378 92 25 chr1 150407086 150407523 -46787909 + L1MD2 LINE L1 5727 6192 -167 4 1732 307 220 42 117 chr1 150408052 150408193 -46787239 + MTEb LTR MaLR 228 362 -17 4 1732 3792 166 22 6 chr1 150408307 150408985 -46786447 - Lx2A1 LINE L1 0 7008 6320 4 1732 32596 80 7 8 chr1 150409227 150414424 -46781008 + L1Md_F3 LINE L1 399 5586 -297 5 1732 8335 34 0 5 chr1 150414424 150415426 -46780006 + L1Md_F3 LINE L1 5587 6583 -1 5 1732 998 296 87 14 chr1 150415440 150415929 -46779503 + MT2A LTR ERVL 1 525 -8 5 1732 244 161 36 24 chr1 150416001 150416084 -46779348 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1732 21 57 0 0 chr1 150416134 150416169 -46779263 + AT_rich Low_complexity Low_complexity 1 35 0 5 1732 587 130 10 0 chr1 150416762 150416862 -46778570 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 5 1732 23 33 0 0 chr1 150417107 150417137 -46778295 + AT_rich Low_complexity Low_complexity 1 30 0 5 1732 308 61 0 58 chr1 150417265 150417317 -46778115 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 5 1732 718 156 0 11 chr1 150418958 150419085 -46776347 - L1_Mur1 LINE L1 -201 5676 5558 5 1732 213 121 0 0 chr1 150419085 150419118 -46776314 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1732 433 18 0 0 chr1 150419146 150419203 -46776229 - L1Md_T LINE L1 -1 6581 6525 5 1732 1231 126 66 0 chr1 150419203 150419401 -46776031 - Lx3B LINE L1 -305 5581 5371 5 1732 8090 123 33 18 chr1 150419401 150420694 -46774738 + Lx3B LINE L1 5661 6973 0 5 1732 498 33 0 0 chr1 150420882 150420942 -46774490 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1732 450 0 0 0 chr1 150420942 150420991 -46774441 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1732 33 0 0 0 chr1 150421138 150421171 -46774261 + AT_rich Low_complexity Low_complexity 1 33 0 5 1732 490 277 25 0 chr1 150421250 150421369 -46774063 + ID_B1 SINE B4 93 214 -10 5 1732 348 359 109 49 chr1 150421520 150421950 -46773482 - MER74C LTR ERVL -1 459 4 5 1732 826 253 236 55 chr1 150422233 150422648 -46772784 - RMER12 LTR ERVK -48 1274 785 5 1732 466 288 34 8 chr1 150422648 150422767 -46772665 - RMER12 LTR ERVK -1200 122 1 5 1732 186 127 55 27 chr1 150423740 150423813 -46771619 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1732 26 0 0 0 chr1 150423903 150423929 -46771503 + AT_rich Low_complexity Low_complexity 1 26 0 5 1732 339 281 197 54 chr1 150424199 150424402 -46771030 + B4 SINE B4 22 253 -39 5 1732 1083 85 7 0 chr1 150424758 150424899 -46770533 + B1_Mus2 SINE Alu 5 146 -1 5 1732 6345 38 0 0 chr1 150425390 150426149 -46769283 + L1Md_T LINE L1 5824 6582 0 5 1732 544 254 98 38 chr1 150427273 150427457 -46767975 - B3 SINE B2 -2 214 20 5 1732 380 180 59 20 chr1 150427482 150427584 -46767848 + Lx4A LINE L1 6953 7058 0 5 1732 26 82 0 0 chr1 150428765 150428826 -46766606 + AT_rich Low_complexity Low_complexity 1 61 0 5 1732 774 387 81 50 chr1 150429481 150429544 -46765888 - MER54B LTR ERVL -10 783 727 5 1732 2641 159 88 8 chr1 150429544 150430032 -46765400 - RLTR11A LTR ERVK -1 527 1 5 1732 774 387 81 50 chr1 150430032 150430670 -46764762 - MER54B LTR ERVL -67 726 60 5 1732 22 35 0 0 chr1 150431625 150431654 -46763778 + AT_rich Low_complexity Low_complexity 1 29 0 5 1732 357 296 10 30 chr1 150431687 150431788 -46763644 - RSINE1 SINE B4 -38 127 29 5 1732 609 42 0 0 chr1 150431968 150432039 -46763393 + L1Md_F2 LINE L1 5516 5586 -297 5 1732 7998 46 7 2 chr1 150432040 150433030 -46762402 + L1Md_F2 LINE L1 5588 6582 0 5 1732 290 303 101 0 chr1 150433041 150433140 -46762292 - ORR1C2-int LTR MaLR -607 902 794 5 1732 1567 231 8 11 chr1 150433221 150433588 -46761844 + ORR1B2 LTR MaLR 1 366 -1 5 1732 583 80 34 0 chr1 150433639 150433727 -46761705 - L1_Mus2 LINE L1 -800 5838 5748 5 1732 4500 79 25 13 chr1 150433727 150434355 -46761077 + L1_Mus2 LINE L1 5931 6566 0 5 1732 2403 216 18 10 chr1 150434377 150434892 -46760540 - ORR1C2-int LTR MaLR -851 519 1 5 1732 1087 252 30 33 chr1 150434892 150435162 -46760270 - ORR1C2 LTR MaLR -12 372 104 5 1732 557 194 235 16 chr1 150438017 150438200 -46757232 - URR1B DNA MER1_type -2 223 1 5 1732 2865 97 17 7 chr1 150438370 150438787 -46756645 + BGLII LTR ERVK 1 421 0 5 1732 3754 125 83 14 chr1 150438834 150439461 -46755971 + Lx LINE L1 5982 6651 -3 5 1732 23 0 0 0 chr1 150440151 150440174 -46755258 + AT_rich Low_complexity Low_complexity 1 23 0 5 1732 22 0 0 0 chr1 150441091 150441113 -46754319 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 2798 186 30 13 chr1 150441356 150441896 -46753536 + Lx LINE L1 6091 6639 -15 5 1732 396 0 0 0 chr1 150441896 150441940 -46753492 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1732 387 0 0 0 chr1 150441940 150441982 -46753450 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1732 2188 139 21 23 chr1 150442016 150442405 -46753027 + L1_Mus4 LINE L1 6244 6631 -5 5 1732 207 189 0 0 chr1 150442409 150442462 -46752970 + A-rich Low_complexity Low_complexity 1 53 0 5 1732 542 336 129 0 chr1 150442492 150442709 -46752723 + B4A SINE B4 43 287 -5 5 1732 23 0 0 0 chr1 150442991 150443014 -46752418 + AT_rich Low_complexity Low_complexity 1 23 0 5 1732 3180 175 57 30 chr1 150443447 150444119 -46751313 + RMER6C LTR ERVK 1 690 0 5 1732 1601 115 0 0 chr1 150444303 150444520 -46750912 + Lx3C LINE L1 6175 6391 -585 5 1732 626 170 9 0 chr1 150444520 150444626 -46750806 - RLTR20A LTR ERVK -434 107 1 5 1732 354 368 44 6 chr1 150444631 150444951 -46750481 - Lx7 LINE L1 -1504 6192 5861 5 1732 245 272 37 12 chr1 150444946 150445028 -46750404 - L1_Mur1 LINE L1 -854 5032 4949 5 1732 185 0 0 39 chr1 150446270 150446296 -46749136 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 5 1732 553 325 20 0 chr1 150446489 150446689 -46748743 - B3 SINE B2 -10 206 3 5 1732 620 336 126 6 chr1 150446691 150447008 -46748424 - Lx8 LINE L1 -112 7361 7007 5 1732 22 70 0 0 chr1 150447017 150447060 -46748372 + AT_rich Low_complexity Low_complexity 1 43 0 5 1732 21 36 0 0 chr1 150447204 150447232 -46748200 + AT_rich Low_complexity Low_complexity 1 28 0 5 1732 26 0 0 0 chr1 150447718 150447744 -46747688 + AT_rich Low_complexity Low_complexity 1 26 0 5 1732 32 0 0 0 chr1 150448180 150448212 -46747220 + AT_rich Low_complexity Low_complexity 1 32 0 5 1732 4962 57 2 2 chr1 150448224 150448844 -46746588 - L1Md_F2 LINE L1 -2 6580 5961 5 1732 273 329 0 12 chr1 150449023 150449109 -46746323 - PB1D10 SINE Alu -28 89 5 5 1732 23 0 0 0 chr1 150449109 150449132 -46746300 + AT_rich Low_complexity Low_complexity 1 23 0 5 1732 235 280 28 18 chr1 150449163 150449272 -46746160 + L1M1 LINE L1 5773 5882 -421 5 1732 22 0 0 0 chr1 150449995 150450017 -46745415 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 677 38 0 0 chr1 150451913 150451993 -46743439 + L1Md_T LINE L1 5507 5586 -297 5 1732 8410 32 0 1 chr1 150451993 150452989 -46742443 + L1Md_T LINE L1 5587 6581 -1 5 1732 1693 256 24 0 chr1 150452994 150453369 -46742063 - MTD LTR MaLR -30 389 6 5 1732 22 0 0 0 chr1 150453663 150453685 -46741747 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 1017 204 25 169 chr1 150453730 150453972 -46741460 + ORR1B1 LTR MaLR 3 217 -177 5 1732 3931 101 51 2 chr1 150454042 150454608 -46740824 + L1_Mus2 LINE L1 5972 6565 -1 5 1732 6338 152 9 16 chr1 150454609 150456124 -46739308 + L1_Mus4 LINE L1 5124 6636 0 5 1732 23 86 0 0 chr1 150456229 150456287 -46739145 + AT_rich Low_complexity Low_complexity 1 58 0 5 1732 22 0 0 0 chr1 150456579 150456601 -46738831 + AT_rich Low_complexity Low_complexity 1 22 0 5 1732 34 55 0 0 chr1 150457210 150457265 -46738167 + AT_rich Low_complexity Low_complexity 1 55 0 5 1732 359 274 52 0 chr1 150457498 150457633 -46737799 - L1M2 LINE L1 -3082 3061 2920 5 1732 2820 171 65 9 chr1 150457650 150458217 -46737215 - Lx5 LINE L1 -865 6185 5587 5 1732 16234 29 5 0 chr1 150458244 150460888 -46734544 - L1Md_T LINE L1 0 6582 3929 5 1732 6356 177 53 55 chr1 150460860 150461015 -46734417 - Lx5 LINE L1 -287 5590 5433 5 1732 209 33 33 0 chr1 150461015 150461045 -46734387 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1732 2753 133 44 16 chr1 150461048 150461498 -46733934 - Lx2 LINE L1 -8 6989 6527 5 1732 6356 177 53 55 chr1 150461498 150462658 -46732774 - Lx5 LINE L1 -445 5432 4287 5 1732 585 0 0 0 chr1 150462658 150462723 -46732709 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1732 6356 177 53 55 chr1 150462723 150462918 -46732514 - Lx5 LINE L1 -1591 4286 4080 5 1732 562 269 138 43 chr1 150462914 150463143 -46732289 - Lx5 LINE L1 -4212 1668 1432 5 1732 207 0 0 0 chr1 150463143 150463166 -46732266 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1732 562 269 138 43 chr1 150463166 150463305 -46732127 - Lx5 LINE L1 -4449 1431 1266 5 1732 560 303 45 63 chr1 150463679 150464120 -46731312 - Lx5 LINE L1 -6425 1303 871 5 1732 21 0 0 0 chr1 150464586 150464607 -46730825 + AT_rich Low_complexity Low_complexity 1 21 0 5 1732 421 226 137 17 chr1 150464805 150464922 -46730510 + B3 SINE B2 86 216 0 5 1732 504 281 130 38 chr1 150465124 150465623 -46729809 + L1M2 LINE L1 4730 5274 -869 5 1732 8277 40 1 8 chr1 150465775 150467293 -46728139 - L1Md_F2 LINE L1 -1 6581 5074 5 1732 26 0 0 0 chr1 150467527 150467553 -46727879 + AT_rich Low_complexity Low_complexity 1 26 0 5 1732 625 312 70 49 chr1 150467554 150467682 -46727750 + MTE2a LTR MaLR 2 130 -249 5 1732 315 65 0 0 chr1 150467682 150467728 -46727704 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 5 1732 625 312 70 49 chr1 150467728 150467969 -46727463 + MTE2a LTR MaLR 131 378 -1 5 1732 182 286 51 51 chr1 150468602 150468661 -46726771 + MER5A DNA MER1_type 92 150 -39 5 1732 4796 145 84 10 chr1 150469722 150470614 -46724818 - RMER17B LTR ERVK 0 958 1 5 1733 1076 181 231 42 chr1 150471165 150471477 -46723955 + RMER13A LTR ERVK 1 371 -489 5 1733 4596 136 42 13 chr1 150471477 150472266 -46723166 - Lx2 LINE L1 0 6997 6186 5 1733 6363 163 21 39 chr1 150472269 150473822 -46721610 + Lx2 LINE L1 4645 6189 -808 5 1733 479 318 116 93 chr1 150473822 150474304 -46721128 + RMER13A LTR ERVK 362 854 -6 5 1733 775 356 28 37 chr1 150474306 150474627 -46720805 + MTE2a LTR MaLR 52 369 -10 5 1733 21 0 0 0 chr1 150474834 150474855 -46720577 + AT_rich Low_complexity Low_complexity 1 21 0 5 1733 237 286 21 42 chr1 150475619 150475714 -46719718 - L1MD LINE L1 -2152 3994 3902 5 1733 305 230 168 20 chr1 150475747 150475872 -46719560 - L1M3 LINE L1 -2505 3638 3499 5 1733 1994 220 139 22 chr1 150475960 150476541 -46718891 + RMER6C LTR ERVK 4 652 -38 5 1733 904 178 42 12 chr1 150476604 150476769 -46718663 + RMER6D LTR ERVK 551 720 0 5 1733 342 255 107 38 chr1 150476770 150476929 -46718503 - L1MC LINE L1 -2728 3418 3249 5 1733 291 114 0 0 chr1 150477099 150477143 -46718289 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1733 399 336 34 22 chr1 150477442 150477710 -46717722 - L1MD LINE L1 -3449 2697 2427 5 1733 1942 64 4 0 chr1 150477763 150478013 -46717419 + L1_Mus2 LINE L1 6054 6304 -262 5 1733 219 36 0 0 chr1 150478275 150478303 -46717129 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1733 556 295 33 55 chr1 150478778 150478961 -46716471 - B3A SINE B2 0 198 20 5 1733 424 161 0 11 chr1 150479119 150479213 -46716219 - L1_Mus4 LINE L1 -6 6630 6538 5 1733 3001 156 2 6 chr1 150479213 150479742 -46715690 - L1_Mm LINE L1 -373 5510 4984 6 1733 1133 111 37 0 chr1 150479741 150479930 -46715502 - MusHAL1 LINE L1 -1260 1452 1257 6 1733 300 53 0 0 chr1 150479930 150479968 -46715464 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 1733 1007 125 21 26 chr1 150479969 150480158 -46715274 - MusHAL1 LINE L1 -2319 393 206 6 1733 7329 52 8 5 chr1 150480150 150481073 -46714359 - L1Md_F2 LINE L1 0 6582 5658 6 1733 2379 53 0 0 chr1 150481073 150481357 -46714075 + L1Md_F2 LINE L1 5426 5709 -174 6 1733 1757 291 34 36 chr1 150481355 150482012 -46713420 - L1VL4 LINE L1 -5536 766 112 6 1733 297 286 71 38 chr1 150482020 150482231 -46713201 + L1MC3 LINE L1 5016 5233 -913 6 1733 270 321 88 21 chr1 150482587 150482915 -46712517 + L1MC3 LINE L1 5800 6149 -1636 6 1733 243 254 15 0 chr1 150483313 150483380 -46712052 + GA-rich Low_complexity Low_complexity 2 69 0 6 1733 7875 45 17 6 chr1 150483619 150484978 -46710454 - L1Md_F2 LINE L1 0 6582 5210 6 1733 286 233 114 23 chr1 150485152 150485240 -46710192 + RMER6C LTR ERVK 1 96 -624 6 1733 382 241 0 0 chr1 150485201 150485284 -46710148 + MT2B LTR ERVL 181 263 -338 6 1733 247 240 56 54 chr1 150485301 150485375 -46710057 + B1_Mus1 SINE Alu 5 78 -70 6 1733 1387 160 15 55 chr1 150485438 150485709 -46709723 + RMER6C LTR ERVK 418 677 -13 6 1733 1036 149 11 6 chr1 150485716 150485891 -46709541 - B2_Mm2 SINE B2 -19 176 1 6 1733 2473 110 31 0 chr1 150485896 150486277 -46709155 + Lx LINE L1 6252 6644 -10 6 1733 21 36 0 0 chr1 150486302 150486330 -46709102 + AT_rich Low_complexity Low_complexity 1 28 0 6 1733 263 321 43 5 chr1 150486775 150486960 -46708472 + L1MC3 LINE L1 7577 7768 -17 6 1733 258 288 0 0 chr1 150487859 150487918 -46707514 - PB1D9 SINE Alu -58 62 4 6 1733 337 337 20 0 chr1 150488725 150488823 -46706609 + PB1D10 SINE Alu 3 102 -15 6 1733 218 315 0 33 chr1 150489182 150489274 -46706158 + RSINE1 SINE B4 77 165 0 6 1733 521 356 75 30 chr1 150489312 150489674 -46705758 - MLT1D LTR MaLR -125 380 3 6 1733 247 295 111 24 chr1 150489758 150490091 -46705341 - L1M2 LINE L1 -408 5892 5531 6 1733 1088 81 0 7 chr1 150490168 150490317 -46705115 - B1_Mus1 SINE Alu 0 148 1 6 1733 378 245 94 0 chr1 150490575 150490734 -46704698 + L1MA6 LINE L1 6121 6294 -6 6 1733 448 276 56 60 chr1 150491155 150491371 -46704061 - B3 SINE B2 -1 215 1 6 1733 1792 328 56 22 chr1 150491548 150492441 -46702991 - Lx8 LINE L1 -451 7022 6100 6 1733 225 0 0 0 chr1 150492670 150492695 -46702737 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1733 296 348 27 34 chr1 150493958 150494104 -46701328 + MTE2b LTR MaLR 207 351 -28 6 1733 477 0 0 0 chr1 150494136 150494189 -46701243 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1733 480 18 0 0 chr1 150494189 150494246 -46701186 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1733 233 387 36 51 chr1 150494317 150494440 -46700992 + ORR1E LTR MaLR 157 276 -83 6 1733 243 0 0 0 chr1 150494440 150494467 -46700965 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1733 233 387 36 51 chr1 150494467 150494539 -46700893 + ORR1E LTR MaLR 277 349 -10 6 1733 359 383 6 94 chr1 150494872 150495042 -46700390 + B4A SINE B4 25 179 -113 6 1733 342 316 55 38 chr1 150495358 150495651 -46699781 + L1MC3 LINE L1 6527 6824 -961 6 1733 1484 224 33 95 chr1 150495867 150496266 -46699166 - ORR1C1 LTR MaLR -4 374 1 6 1733 431 271 125 35 chr1 150496316 150496572 -46698860 + L1MC3 LINE L1 7140 7418 -367 6 1733 369 372 7 0 chr1 150496626 150496763 -46698669 + B1_Mur1 SINE Alu 11 148 -1 6 1733 336 49 98 0 chr1 150497125 150497207 -46698225 + (CAAAA)n Simple_repeat Simple_repeat 2 91 0 6 1733 1486 157 8 8 chr1 150498270 150498514 -46696918 - RLTR17 LTR ERVK -266 426 183 6 1733 343 88 0 0 chr1 150498647 150498704 -46696728 + L1_Mus3 LINE L1 6574 6630 -8 6 1733 23 0 0 0 chr1 150498723 150498746 -46696686 + AT_rich Low_complexity Low_complexity 1 23 0 6 1733 1596 224 23 64 chr1 150501516 150501955 -46693477 - MTC LTR MaLR 0 421 1 1 1733 837 71 0 0 chr1 150502019 150502132 -46693300 + (TC)n Simple_repeat Simple_repeat 1 113 0 2 1733 273 57 0 0 chr1 150502132 150502166 -46693266 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1733 517 321 43 28 chr1 150502216 150502498 -46692934 - Lx8 LINE L1 -466 7007 6722 4 1733 852 311 64 34 chr1 150502510 150502950 -46692482 - Lx8 LINE L1 -819 6654 6202 4 1733 426 85 0 0 chr1 150502971 150503030 -46692402 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1733 23 33 0 0 chr1 150503502 150503532 -46691900 + AT_rich Low_complexity Low_complexity 1 30 0 6 1733 334 310 115 58 chr1 150504430 150504656 -46690776 - RMER5 LTR ERV1 -17 517 279 7 1733 566 174 22 4 chr1 150504689 150504904 -46690528 - Lx9 LINE L1 -1 7643 7383 8 1733 234 167 76 0 chr1 150504947 150505013 -46690419 - Lx7 LINE L1 -15 7681 7611 9 1733 450 0 0 0 chr1 150505036 150505086 -46690346 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1733 1222 245 64 0 chr1 150505143 150505425 -46690007 - Lx9 LINE L1 -323 7321 7022 8 1733 33 43 0 0 chr1 150505542 150505589 -46689843 + AT_rich Low_complexity Low_complexity 1 47 0 1 1733 613 169 194 0 chr1 150506172 150506296 -46689136 - Lx5 LINE L1 -47 7003 6856 1 1733 1468 114 76 4 chr1 150506592 150506829 -46688603 - Lx2 LINE L1 -1 6996 6743 1 1733 267 79 0 0 chr1 150506999 150507037 -46688395 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 1733 909 144 0 0 chr1 150507292 150507431 -46688001 + B1_Mus1 SINE Alu 5 143 -5 1 1733 572 73 12 0 chr1 150507434 150507516 -46687916 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1 1733 473 287 17 9 chr1 150508993 150509109 -46686323 - B1_Mur2 SINE Alu -27 122 6 1 1733 21 71 0 0 chr1 150510711 150510753 -46684679 + AT_rich Low_complexity Low_complexity 1 42 0 1 1733 26 30 0 0 chr1 150511118 150511151 -46684281 + AT_rich Low_complexity Low_complexity 1 33 0 1 1733 23 33 0 0 chr1 150512074 150512104 -46683328 + AT_rich Low_complexity Low_complexity 1 30 0 2 1733 276 149 0 0 chr1 150512572 150512619 -46682813 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1733 185 340 90 0 chr1 150512874 150512974 -46682458 + MIRc SINE MIR 130 238 -30 2 1733 676 22 43 0 chr1 150514721 150514813 -46680619 + (GAAAA)n Simple_repeat Simple_repeat 4 99 0 2 1733 391 316 70 72 chr1 150515154 150515540 -46679892 - L1MEc LINE L1 -4978 1422 1038 2 1733 32 81 0 0 chr1 150515557 150515631 -46679801 + AT_rich Low_complexity Low_complexity 1 74 0 2 1733 737 242 136 8 chr1 150515935 150516177 -46679255 - Lx9 LINE L1 -566 7078 6806 2 1733 326 329 51 62 chr1 150516372 150516550 -46678882 - MLT1-int LTR MaLR -495 876 701 2 1733 21 0 0 0 chr1 150516657 150516678 -46678754 + AT_rich Low_complexity Low_complexity 1 21 0 2 1733 339 322 114 76 chr1 150517510 150517641 -46677791 - RSINE1 SINE B4 0 165 30 2 1733 259 70 139 0 chr1 150517646 150517689 -46677743 - ORR1A2 LTR MaLR -6 320 272 3 1733 7803 57 2 6 chr1 150517722 150518833 -46676599 - L1Md_F2 LINE L1 -7 6575 5471 3 1733 275 48 0 0 chr1 150518848 150518890 -46676542 - L1Md_T LINE L1 0 6582 6541 3 1733 685 146 114 0 chr1 150518890 150519013 -46676419 - ORR1A2 LTR MaLR -47 280 144 3 1733 1370 165 16 27 chr1 150518996 150519252 -46676180 - ORR1A2-int LTR MaLR -678 1285 1033 3 1733 225 184 0 0 chr1 150519453 150519502 -46675930 + Lx3A LINE L1 6933 6981 0 3 1733 441 0 0 0 chr1 150519710 150519759 -46675673 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1733 273 344 0 0 chr1 150520142 150520235 -46675197 + B1F2 SINE Alu 53 145 -4 3 1733 1920 219 50 22 chr1 150521678 150522141 -46673291 - RLTR28B LTR ERVL -2 479 4 3 1733 405 331 97 17 chr1 150522600 150522775 -46672657 + ORR1E LTR MaLR 1 189 -170 3 1733 319 368 8 16 chr1 150523008 150523135 -46672297 + RSINE1 SINE B4 5 130 -35 3 1733 298 283 15 6 chr1 150523165 150523273 -46672159 + ORR1E-int LTR MaLR 1372 1447 -133 3 1733 1323 370 80 79 chr1 150523308 150524782 -46670650 + ORR1E-int LTR MaLR 53 1528 -52 3 1733 321 402 63 35 chr1 150524782 150525037 -46670395 + ORR1E LTR MaLR 2 263 -96 3 1733 1696 150 39 51 chr1 150525145 150525476 -46669956 - ORR1A2 LTR MaLR 0 327 1 4 1733 9662 161 70 20 chr1 150525476 150526920 -46668512 - ORR1A2-int LTR MaLR 0 1963 443 4 1733 4292 70 2 0 chr1 150526920 150527474 -46667958 - L1_Mus1 LINE L1 0 6567 6013 4 1733 9662 161 70 20 chr1 150527474 150527898 -46667534 - ORR1A2-int LTR MaLR -1521 442 1 4 1733 1895 122 13 11 chr1 150527900 150528233 -46667199 - ORR1A2 LTR MaLR -2 325 1 4 1733 422 169 0 0 chr1 150528234 150528317 -46667115 - ORR1A2 LTR MaLR -240 87 5 4 1733 360 0 0 0 chr1 150528344 150528384 -46667048 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1733 841 73 0 0 chr1 150528396 150528506 -46666926 + B1_Mus1 SINE Alu 30 139 -9 4 1733 243 0 0 0 chr1 150528506 150528533 -46666899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1733 29 90 0 0 chr1 150529538 150529616 -46665816 + AT_rich Low_complexity Low_complexity 1 78 0 4 1733 416 293 132 27 chr1 150530201 150530581 -46664851 + L1MB5 LINE L1 5509 5928 -246 4 1733 327 232 0 0 chr1 150530761 150530843 -46664589 + (TA)n Simple_repeat Simple_repeat 1 82 0 4 1733 564 56 0 0 chr1 150531630 150531702 -46663730 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1733 235 220 0 0 chr1 150532069 150532119 -46663313 - ORR1D1 LTR MaLR -2 372 323 5 1733 623 248 0 22 chr1 150532145 150532281 -46663151 - B1_Mus1 SINE Alu 0 148 16 5 1733 7088 95 7 15 chr1 150532439 150533877 -46661555 + L1_Mus2 LINE L1 5139 6565 -1 5 1733 311 0 0 25 chr1 150533983 150534023 -46661409 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1733 1014 54 70 0 chr1 150534023 150534152 -46661280 - B1_Mm SINE Alu -9 138 1 5 1733 21 71 0 0 chr1 150534612 150534654 -46660778 + AT_rich Low_complexity Low_complexity 1 42 0 5 1733 1399 284 54 54 chr1 150535080 150535132 -46660300 - RLTR20A LTR ERVK -60 503 459 5 1733 369 0 0 0 chr1 150535132 150535173 -46660259 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1733 441 0 0 0 chr1 150535173 150535221 -46660211 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1733 1697 255 22 31 chr1 150535221 150535670 -46659762 - RLTR20A LTR ERVK -105 458 2 5 1733 1143 79 11 6 chr1 150535678 150535856 -46659576 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 1733 381 75 0 0 chr1 150535919 150535972 -46659460 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1733 408 247 183 43 chr1 150536314 150536500 -46658932 + B3 SINE B2 3 214 -2 6 1733 1061 109 0 0 chr1 150538658 150538805 -46656627 + B1_Mus1 SINE Alu 2 148 0 6 1733 351 0 0 0 chr1 150538914 150538953 -46656479 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1733 442 114 25 0 chr1 150539030 150539109 -46656323 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1733 4935 78 5 0 chr1 150539493 150540148 -46655284 + L1_Mus1 LINE L1 5910 6567 0 6 1733 24 53 0 0 chr1 150540158 150540196 -46655236 + AT_rich Low_complexity Low_complexity 1 38 0 6 1733 23 0 0 0 chr1 150540748 150540771 -46654661 + AT_rich Low_complexity Low_complexity 1 23 0 6 1733 234 0 0 0 chr1 150540873 150540899 -46654533 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1733 4322 76 2 9 chr1 150540991 150541574 -46653858 - L1Md_F2 LINE L1 -13 6569 5991 6 1733 2478 69 3 0 chr1 150541576 150541895 -46653537 + L1Md_F2 LINE L1 5267 5586 -297 7 1733 7600 69 0 3 chr1 150541896 150542882 -46652550 + L1Md_F2 LINE L1 5588 6570 -12 7 1733 3025 44 10 4 chr1 150542884 150543272 -46652160 - L1Md_F2 LINE L1 -578 6004 5649 6 1733 333 343 28 28 chr1 150543462 150543606 -46651826 - RSINE1 SINE B4 -19 146 3 7 1733 583 307 61 26 chr1 150545050 150545281 -46650151 - MIR SINE MIR 0 262 24 7 1733 441 325 58 82 chr1 150545530 150545906 -46649526 + MLT1A LTR MaLR 8 374 0 7 1733 21 36 0 0 chr1 150546294 150546322 -46649110 + AT_rich Low_complexity Low_complexity 1 28 0 7 1733 1047 104 7 0 chr1 150546326 150546470 -46648962 + B1_Mm SINE Alu 2 146 -1 7 1733 4284 166 37 5 chr1 150546559 150547309 -46648123 + Lx4A LINE L1 6285 7058 0 7 1733 423 187 71 53 chr1 150547347 150547460 -46647972 - RMER5 LTR ERV1 -405 129 15 7 1733 378 0 0 0 chr1 150547994 150548036 -46647396 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1733 27 49 0 0 chr1 150548873 150548914 -46646518 + AT_rich Low_complexity Low_complexity 1 41 0 7 1733 181 57 57 0 chr1 150548947 150548982 -46646450 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1733 3383 121 40 69 chr1 150549000 150549649 -46645783 + RLTR6_Mm LTR ERV1 1 630 -24 8 1733 2368 239 18 98 chr1 150549649 150550325 -46645107 - Lx6 LINE L1 -299 7161 6540 8 1733 9094 212 55 8 chr1 150550310 150550960 -46644472 - Lx6 LINE L1 -1776 5920 5231 8 1733 669 25 0 0 chr1 150550960 150551039 -46644393 + (TA)n Simple_repeat Simple_repeat 2 80 0 8 1733 9094 207 51 8 chr1 150551039 150552612 -46642820 - Lx6 LINE L1 -650 5230 3585 8 1733 294 29 0 0 chr1 150552839 150552874 -46642558 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1733 526 393 62 15 chr1 150552921 150553195 -46642237 - B4A SINE B4 -2 290 4 8 1733 210 71 0 0 chr1 150553525 150553553 -46641879 + (TTC)n Simple_repeat Simple_repeat 2 29 0 8 1733 465 353 40 0 chr1 150554439 150554589 -46640843 - RSINE1 SINE B4 -8 157 2 8 1733 21 36 0 0 chr1 150555282 150555310 -46640122 + AT_rich Low_complexity Low_complexity 1 28 0 8 1733 341 349 39 26 chr1 150558280 150558433 -46636999 + RSINE1 SINE B4 3 157 -8 8 1733 31 0 0 0 chr1 150558502 150558533 -46636899 + AT_rich Low_complexity Low_complexity 1 31 0 9 1733 2344 158 8 0 chr1 150558711 150559077 -46636355 + Lx2B LINE L1 6374 6742 -258 9 1733 2560 242 50 109 chr1 150559078 150560062 -46635370 - RMER17B LTR ERVK -32 926 1 9 1733 956 190 129 4 chr1 150560064 150560297 -46635135 + Lx2B LINE L1 6739 7000 0 9 1733 423 0 0 0 chr1 150561819 150561866 -46633566 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9 1733 1137 57 0 0 chr1 150561870 150562010 -46633422 - B1_Mm SINE Alu -7 140 1 9 1733 768 219 17 17 chr1 150562010 150562191 -46633241 + MT2A LTR ERVL 2 182 -351 9 1733 656 211 126 6 chr1 150562193 150562360 -46633072 + MT2A LTR ERVL 347 533 0 9 1733 1011 233 69 24 chr1 150562595 150562885 -46632547 - Lx9 LINE L1 -705 6939 6637 9 1733 315 343 102 43 chr1 150562910 150563096 -46632336 + B3A SINE B2 2 198 0 9 1733 33 25 0 0 chr1 150563185 150563225 -46632207 + AT_rich Low_complexity Low_complexity 1 40 0 9 1733 346 290 99 17 chr1 150563267 150563439 -46631993 - MTC-int LTR MaLR -405 853 668 9 1733 855 254 54 25 chr1 150563628 150563908 -46631524 - MTC-int LTR MaLR -669 589 365 1 1733 304 213 186 16 chr1 150563908 150564032 -46631400 - Lx5 LINE L1 -2 7048 6904 1 1733 351 311 37 7 chr1 150564190 150564326 -46631106 + L1M3 LINE L1 5501 5640 -651 1 1733 1870 335 140 53 chr1 150564687 150566072 -46629360 + MTE-int LTR MaLR 36 1541 -39 1 1733 362 254 62 27 chr1 150566365 150566530 -46628902 + L1M3 LINE L1 5659 5818 -494 1 1733 213 94 0 0 chr1 150567046 150567078 -46628354 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1733 1073 277 63 40 chr1 150568737 150569136 -46626296 - MLT2D LTR ERVL 0 414 7 1 1733 25 0 0 0 chr1 150569635 150569660 -46625772 + AT_rich Low_complexity Low_complexity 1 25 0 1 1733 215 217 0 16 chr1 150569876 150569937 -46625495 + GA-rich Low_complexity Low_complexity 6 65 0 1 1733 242 0 0 161 chr1 150569942 150570368 -46625064 + (CAGGG)n Simple_repeat Simple_repeat 1 357 0 1 1733 410 143 26 26 chr1 150570368 150570519 -46624913 + GA-rich Low_complexity Low_complexity 30 180 0 1 1733 828 138 0 52 chr1 150570519 150570794 -46624638 + (CAGAGA)n Simple_repeat Simple_repeat 1 260 0 1 1733 1026 293 65 10 chr1 150570893 150571239 -46624193 - MTE2b LTR MaLR 0 379 15 1 1733 601 264 7 0 chr1 150571242 150571390 -46624042 + B1_Mur2 SINE Alu 1 149 0 1 1733 198 0 0 0 chr1 150571391 150571413 -46624019 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1733 38 105 0 0 chr1 150571601 150571744 -46623688 + AT_rich Low_complexity Low_complexity 1 143 0 1 1733 2196 246 25 0 chr1 150571843 150572314 -46623118 + Lx5 LINE L1 6560 7042 -8 1 1733 32 26 0 0 chr1 150572409 150572448 -46622984 + AT_rich Low_complexity Low_complexity 1 39 0 1 1733 279 287 304 17 chr1 150573717 150573881 -46621551 - B3 SINE B2 -4 212 2 1 1733 772 311 77 69 chr1 150574493 150574869 -46620563 + MTEb LTR MaLR 1 379 0 1 1733 1115 76 7 0 chr1 150575948 150576093 -46619339 - B1_Mus2 SINE Alu 0 147 2 1 1733 2398 170 33 2 chr1 150577715 150578134 -46617298 + RMER6B LTR ERVK 6 437 -24 1 1733 218 29 59 0 chr1 150578395 150578429 -46617003 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 1 1733 1289 235 45 27 chr1 150579490 150579827 -46615605 + Lx6 LINE L1 6725 7067 -393 1 1733 228 179 18 0 chr1 150579843 150579899 -46615533 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 1 1733 1877 114 17 0 chr1 150580104 150580401 -46615031 - L1_Mur1 LINE L1 -611 5275 4974 1 1733 23 33 0 0 chr1 150580408 150580438 -46614994 + AT_rich Low_complexity Low_complexity 1 30 0 1 1733 2837 100 0 12 chr1 150580442 150580867 -46614565 - L1Md_F2 LINE L1 0 6582 6163 1 1733 2524 85 0 6 chr1 150580863 150581206 -46614226 - L1_Mus1 LINE L1 -18 6549 6209 1 1733 2777 62 0 6 chr1 150581222 150581578 -46613854 + L1_Mus1 LINE L1 5587 5940 -627 1 1733 7273 71 0 16 chr1 150581575 150582814 -46612618 - L1Md_A LINE L1 -3683 2200 991 1 1733 7549 52 5 6 chr1 150582814 150583769 -46611663 + L1Md_F3 LINE L1 5630 6583 -1 1 1733 252 20 0 107 chr1 150584428 150584484 -46610948 + (CAAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1733 2211 132 14 25 chr1 150584546 150584912 -46610520 - Lx LINE L1 -3 6651 6290 1 1733 21 57 0 0 chr1 150586509 150586544 -46608888 + AT_rich Low_complexity Low_complexity 1 35 0 1 1733 291 333 35 35 chr1 150586832 150586947 -46608485 + RSINE1 SINE B4 1 115 -50 1 1733 417 321 15 15 chr1 150587084 150587217 -46608215 + B1F SINE Alu 7 139 -10 1 1733 225 233 21 151 chr1 150587691 150587883 -46607549 + Lx9 LINE L1 7478 7644 0 1 1733 446 312 36 0 chr1 150588222 150588360 -46607072 - RMER15 LTR ERVL -3 572 430 1 1733 393 281 40 59 chr1 150588424 150588683 -46606749 - L1MA5 LINE L1 -5 6298 6043 1 1733 22 56 0 0 chr1 150589012 150589048 -46606384 + AT_rich Low_complexity Low_complexity 1 36 0 1 1733 2486 218 21 9 chr1 150589214 150589782 -46605650 + RMER15 LTR ERVL 1 575 0 1 1733 289 320 32 101 chr1 150590545 150590839 -46604593 - MER31A LTR ERV1 -193 292 18 1 1733 311 0 0 25 chr1 150590960 150591000 -46604432 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1733 487 337 58 51 chr1 150591305 150591580 -46603852 + MLT1J-int LTR MaLR 870 1146 -241 1 1733 9538 87 20 1 chr1 150591747 150593488 -46601944 + L1VL4 LINE L1 512 2286 -1273 1 1733 1809 179 39 51 chr1 150593489 150593901 -46601531 + Lx2 LINE L1 5865 6271 -726 1 1733 3248 72 18 1 chr1 150593897 150594335 -46601097 - L1Md_F2 LINE L1 -579 6003 5588 1 1733 4280 80 24 9 chr1 150594335 150594919 -46600513 + L1Md_F2 LINE L1 5990 6582 0 1 1733 3814 180 20 4 chr1 150594912 150595643 -46599789 + Lx2 LINE L1 6254 6996 -1 1 1733 193 53 79 0 chr1 150595646 150595684 -46599748 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1733 584 145 21 45 chr1 150595854 150595990 -46599442 - RMER6C LTR ERVK -582 174 2 1 1733 3039 179 29 0 chr1 150595991 150596573 -46598859 - RMER6-int LTR ERVK 0 3177 2579 1 1733 288 262 0 16 chr1 150596573 150596635 -46598797 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 1 1733 251 139 0 0 chr1 150596640 150596683 -46598749 - RMER6-int LTR ERVK -665 2512 2470 1 1733 8400 161 94 2 chr1 150596681 150598276 -46597156 - RMER6-int LTR ERVK -1435 1742 1 1 1733 1193 155 19 0 chr1 150598276 150598482 -46596950 - RMER6C LTR ERVK 0 690 481 1 1733 1419 253 90 47 chr1 150598482 150598947 -46596485 - RLTR20B3 LTR ERVK 0 577 93 1 1733 923 188 145 163 chr1 150599100 150599314 -46596118 - RMER6C LTR ERVK -195 495 340 1 1733 486 0 0 0 chr1 150599314 150599368 -46596064 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 1733 923 188 145 163 chr1 150599368 150599650 -46595782 - RMER6C LTR ERVK -351 339 8 1 1733 23 68 0 0 chr1 150599764 150599808 -46595624 + AT_rich Low_complexity Low_complexity 1 44 0 1 1733 2343 121 55 0 chr1 150600002 150600381 -46595051 - L1_Mm LINE L1 -833 5050 4651 1 1733 6815 109 24 0 chr1 150600379 150601568 -46593864 + L1_Mus3 LINE L1 5375 6593 -45 1 216 4973 63 24 2 chr1 150601568 150602204 -46593228 + L1_Mus1 LINE L1 5909 6558 -9 1 1734 203 258 0 0 chr1 150602228 150602290 -46593142 + A-rich Low_complexity Low_complexity 1 62 0 1 1734 180 152 0 0 chr1 150602334 150602367 -46593065 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1734 549 0 0 0 chr1 150602368 150602429 -46593003 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1734 239 304 128 74 chr1 150602489 150602731 -46592701 - LTR80B LTR ERVL -256 328 74 1 1734 256 48 23 23 chr1 150603003 150603046 -46592386 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1734 229 358 49 63 chr1 150603054 150603197 -46592235 - RSINE1 SINE B4 -22 143 3 1 1734 21 82 0 0 chr1 150603202 150603251 -46592181 + AT_rich Low_complexity Low_complexity 1 49 0 1 1734 2252 156 24 52 chr1 150603293 150603759 -46591673 - RLTR11B LTR ERVK 0 453 1 1 1734 686 23 0 11 chr1 150604737 150604826 -46590606 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1734 216 119 16 33 chr1 150604999 150605060 -46590372 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1734 501 293 80 36 chr1 150605561 150605926 -46589506 + L1MA5 LINE L1 5875 6255 -45 1 1734 27 29 0 0 chr1 150606715 150606749 -46588683 + AT_rich Low_complexity Low_complexity 1 34 0 1 1734 1971 129 48 37 chr1 150607120 150607275 -46588157 - Lx LINE L1 -15 6639 6477 1 1734 3521 20 0 0 chr1 150607275 150607671 -46587761 - MTA_Mm LTR MaLR 0 396 1 1 1734 8949 39 5 1 chr1 150607671 150608765 -46586667 - MTA_Mm-int LTR MaLR 0 1098 1 1 1734 3533 20 0 0 chr1 150608765 150609161 -46586271 - MTA_Mm LTR MaLR 0 396 1 1 1734 1971 129 48 37 chr1 150609161 150609380 -46586052 - Lx LINE L1 -178 6476 6261 1 1734 21 0 0 0 chr1 150609543 150609564 -46585868 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 2081 216 88 68 chr1 150610038 150610594 -46584838 + RMER2 LTR ERV1 1 567 0 1 1734 21 0 0 0 chr1 150610671 150610692 -46584740 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 231 103 0 0 chr1 150610856 150610895 -46584537 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1734 2387 174 117 84 chr1 150611631 150612297 -46583135 - RMER6C LTR ERVK -2 688 1 1 1734 2940 81 10 0 chr1 150612352 150612748 -46582684 - MTB LTR MaLR 0 400 1 1 1734 5797 246 32 11 chr1 150612785 150614426 -46581006 - Lx6 LINE L1 -320 7140 5462 1 1734 5069 183 50 45 chr1 150614425 150615687 -46579745 + L1_Mur3 LINE L1 3674 4942 -938 1 1734 399 21 0 0 chr1 150615687 150615735 -46579697 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1734 23 33 0 0 chr1 150615771 150615801 -46579631 + AT_rich Low_complexity Low_complexity 1 30 0 1 1734 566 371 29 10 chr1 150616003 150616210 -46579222 + B3 SINE B2 1 211 -5 1 1734 237 65 0 0 chr1 150617279 150617310 -46578122 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1734 26 0 0 0 chr1 150617429 150617455 -46577977 + AT_rich Low_complexity Low_complexity 1 26 0 1 1734 1579 32 0 0 chr1 150617708 150617894 -46577538 - B2_Mm1t SINE B2 -7 186 1 1 1734 234 324 69 0 chr1 150618046 150618148 -46577284 + PB1D9 SINE Alu 10 118 -2 1 1734 212 0 0 35 chr1 150618277 150618306 -46577126 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1734 568 72 8 59 chr1 150618733 150618851 -46576581 - L1Md_F2 LINE L1 0 6582 6471 1 1734 3216 82 9 11 chr1 150619055 150619510 -46575922 + L1Md_F2 LINE L1 6128 6581 -1 1 1734 755 143 0 8 chr1 150619512 150619639 -46575793 - L1_Mus2 LINE L1 -214 6352 6227 1 1734 1132 84 116 11 chr1 150619639 150619820 -46575612 + L1_Mus2 LINE L1 6353 6552 -14 1 1734 960 248 113 0 chr1 150619869 150620188 -46575244 + Lx9 LINE L1 7228 7582 -62 1 1734 1075 328 76 17 chr1 150621274 150621814 -46573618 + MER90a LTR ERV1 9 580 -34 1 1734 225 94 0 0 chr1 150622442 150622474 -46572958 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1734 489 222 0 0 chr1 150622488 150622659 -46572773 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1734 292 258 88 104 chr1 150623321 150623503 -46571929 + B3A SINE B2 8 186 -9 1 1734 21 0 0 0 chr1 150625014 150625035 -46570397 + AT_rich Low_complexity Low_complexity 1 21 0 1 1734 25 31 0 0 chr1 150625139 150625171 -46570261 + AT_rich Low_complexity Low_complexity 1 32 0 1 1734 183 156 0 0 chr1 150625659 150625691 -46569741 + T-rich Low_complexity Low_complexity 1 32 0 1 1734 1506 126 0 8 chr1 150625875 150626116 -46569316 - L1_Mus1 LINE L1 0 6567 6329 1 1734 231 61 0 0 chr1 150626713 150626746 -46568686 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1734 496 296 45 96 chr1 150627129 150627327 -46568105 - RMER30 DNA MER1_type -1 201 14 1 1734 27 49 0 0 chr1 150629233 150629274 -46566158 + AT_rich Low_complexity Low_complexity 1 41 0 1 1734 25 0 0 0 chr1 150629522 150629547 -46565885 + AT_rich Low_complexity Low_complexity 1 25 0 2 1734 2398 265 115 8 chr1 150629585 150630300 -46565132 - Lx6 LINE L1 -8 7452 6662 2 1734 1793 146 15 57 chr1 150630314 150630648 -46564784 + ORR1A4 LTR MaLR 2 321 -8 2 1734 2320 282 65 19 chr1 150630655 150631451 -46563981 - Lx6 LINE L1 -805 6655 5823 2 1734 518 329 77 11 chr1 150631460 150631666 -46563766 - Lx5 LINE L1 -4 7054 6823 2 1734 260 206 0 16 chr1 150632271 150632335 -46563097 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1734 33 56 0 0 chr1 150632999 150633053 -46562379 + AT_rich Low_complexity Low_complexity 1 54 0 2 1734 37 0 0 0 chr1 150633813 150633850 -46561582 + AT_rich Low_complexity Low_complexity 1 37 0 2 1734 258 312 35 44 chr1 150633870 150633984 -46561448 - Lx8 LINE L1 -2 7471 7359 2 1734 331 189 41 0 chr1 150633987 150634109 -46561323 + (TA)n Simple_repeat Simple_repeat 1 127 0 2 1734 186 43 0 0 chr1 150634484 150634507 -46560925 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1734 250 200 46 0 chr1 150634508 150634573 -46560859 + GA-rich Low_complexity Low_complexity 3 70 0 2 1734 4723 178 16 38 chr1 150635048 150635281 -46560151 + MYSERV6-int LTR ERVK 7942 8157 -802 2 1734 474 75 0 0 chr1 150635281 150635348 -46560084 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2 1734 4723 178 16 38 chr1 150635348 150635427 -46560005 + MYSERV6-int LTR ERVK 8158 8240 -719 2 1734 821 103 0 8 chr1 150635427 150635554 -46559878 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 2 1734 4723 178 16 38 chr1 150635554 150636214 -46559218 + MYSERV6-int LTR ERVK 8241 8893 -66 2 1734 21 0 0 0 chr1 150636521 150636542 -46558890 + AT_rich Low_complexity Low_complexity 1 21 0 2 1734 8117 61 0 1 chr1 150636625 150637657 -46557775 + L1Md_F3 LINE L1 4555 5585 -298 2 1734 7987 38 1 6 chr1 150637658 150638647 -46556785 + L1Md_F3 LINE L1 5587 6570 -14 2 1734 484 312 39 0 chr1 150638662 150638867 -46556565 + L1M2 LINE L1 4074 4286 -1857 2 1734 342 45 0 0 chr1 150639216 150639260 -46556172 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1734 21 82 0 0 chr1 150639584 150639633 -46555799 + AT_rich Low_complexity Low_complexity 1 49 0 2 1734 297 0 0 0 chr1 150640581 150640614 -46554818 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1734 1112 237 87 65 chr1 150640647 150641018 -46554414 + RMER6C LTR ERVK 71 447 -243 2 1734 1675 78 45 8 chr1 150641018 150641264 -46554168 + L1_Mus2 LINE L1 6312 6566 0 2 1734 1112 237 87 65 chr1 150641264 150641294 -46554138 + RMER6C LTR ERVK 448 481 -209 2 1734 1126 82 0 0 chr1 150641294 150641440 -46553992 + B1_Mm SINE Alu 2 147 0 2 1734 189 147 0 0 chr1 150641440 150641474 -46553958 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 2 1734 1478 89 0 103 chr1 150641478 150641741 -46553691 - L1_Mur1 LINE L1 -1148 4738 4503 2 1734 401 95 0 0 chr1 150641768 150641831 -46553601 - RMER6-int LTR ERVK -643 2534 2472 2 1734 4194 186 12 4 chr1 150641833 150642636 -46552796 - RMER6-int LTR ERVK -1437 1740 931 2 1734 3397 269 43 30 chr1 150642638 150643663 -46551769 + Lx5 LINE L1 5975 7047 -3 2 1734 1086 99 0 0 chr1 150643756 150643918 -46551514 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 2 1734 185 0 40 0 chr1 150644712 150644737 -46550695 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1734 381 75 0 0 chr1 150644902 150644955 -46550477 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 2 1734 217 338 0 0 chr1 150645470 150645541 -46549891 + CT-rich Low_complexity Low_complexity 3 73 0 2 1734 198 0 0 0 chr1 150646394 150646416 -46549016 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2 1734 216 293 35 0 chr1 150646427 150646485 -46548947 - L3 LINE CR1 -435 4054 3995 2 1734 1899 198 129 56 chr1 150646500 150646794 -46548638 + RMER6C LTR ERVK 1 321 -369 2 1734 714 12 0 0 chr1 150646794 150646877 -46548555 + (GGAGA)n Simple_repeat Simple_repeat 3 85 0 2 1734 1899 198 129 56 chr1 150646877 150647224 -46548208 + RMER6C LTR ERVK 322 689 -1 2 1734 732 129 0 8 chr1 150647245 150647370 -46548062 - Lx2 LINE L1 0 6997 6874 2 1734 4257 102 19 6 chr1 150649902 150650546 -46544886 + Lx3_Mus LINE L1 6357 7008 -1 2 1734 180 0 0 0 chr1 150650546 150650566 -46544866 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1734 882 322 90 12 chr1 150650570 150650969 -46544463 - Lx6 LINE L1 -14 7446 7017 2 1734 1736 242 58 108 chr1 150650991 150651629 -46543803 + Lx7 LINE L1 6888 7493 -203 2 1734 256 224 0 20 chr1 150651629 150651729 -46543703 + GA-rich Low_complexity Low_complexity 3 100 0 2 1734 515 16 16 0 chr1 150651793 150651857 -46543575 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2 1734 38 22 0 0 chr1 150651875 150651920 -46543512 + AT_rich Low_complexity Low_complexity 1 45 0 2 1734 339 25 0 0 chr1 150652028 150652068 -46543364 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1734 23 54 0 0 chr1 150652191 150652228 -46543204 + AT_rich Low_complexity Low_complexity 1 37 0 2 1734 375 386 24 6 chr1 150652243 150652407 -46543025 + B4 SINE B4 6 172 -120 2 1734 24 67 0 0 chr1 150652639 150652684 -46542748 + AT_rich Low_complexity Low_complexity 1 45 0 2 1734 511 294 83 83 chr1 150652736 150653036 -46542396 + MER57C2 LTR ERV1 105 404 -30 2 1734 225 152 0 42 chr1 150653119 150653167 -46542265 + (TCTCTG)n Simple_repeat Simple_repeat 5 50 0 2 1734 217 272 0 50 chr1 150653167 150653287 -46542145 + A-rich Low_complexity Low_complexity 4 117 0 2 1734 466 257 8 0 chr1 150653340 150653597 -46541835 + (CA)n Simple_repeat Simple_repeat 1 259 0 2 1734 337 83 0 20 chr1 150653597 150653646 -46541786 + HAL1-3A_ME LINE L1 1976 2023 -835 2 1734 25 31 0 0 chr1 150654484 150654516 -46540916 + AT_rich Low_complexity Low_complexity 1 32 0 2 1734 681 252 162 10 chr1 150655738 150655928 -46539504 - ORR1D1 LTR MaLR 0 374 154 2 1734 1852 151 3 59 chr1 150655928 150656265 -46539167 + ORR1A3 LTR MaLR 1 318 -8 2 1734 614 242 67 18 chr1 150656269 150656433 -46538999 - ORR1D1 LTR MaLR -202 172 1 2 1734 858 297 44 109 chr1 150657843 150658022 -46537410 + MTE2a LTR MaLR 9 171 -208 2 1734 414 0 0 0 chr1 150658022 150658068 -46537364 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1734 858 297 44 109 chr1 150658068 150658255 -46537177 + MTE2a LTR MaLR 172 351 -28 2 1734 36 0 0 0 chr1 150658420 150658456 -46536976 + AT_rich Low_complexity Low_complexity 1 36 0 2 1734 567 0 0 0 chr1 150659454 150659517 -46535915 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 2 1734 297 0 0 0 chr1 150659633 150659666 -46535766 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1734 241 26 26 26 chr1 150659704 150659743 -46535689 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1734 341 344 156 19 chr1 150659758 150659912 -46535520 - B4 SINE B4 -2 290 116 2 1734 26 30 0 0 chr1 150660580 150660613 -46534819 + AT_rich Low_complexity Low_complexity 1 33 0 2 1734 340 323 101 6 chr1 150661587 150661746 -46533686 + MLT1A0 LTR MaLR 10 183 -182 2 1734 888 322 42 6 chr1 150661768 150662124 -46533308 - Lx6 LINE L1 -27 7433 7065 2 1734 318 50 0 0 chr1 150662382 150662422 -46533010 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1734 21 0 0 0 chr1 150663515 150663536 -46531896 + AT_rich Low_complexity Low_complexity 1 21 0 2 1734 27 29 0 0 chr1 150663796 150663830 -46531602 + AT_rich Low_complexity Low_complexity 1 34 0 2 1734 27 62 0 0 chr1 150663907 150663955 -46531477 + AT_rich Low_complexity Low_complexity 1 48 0 2 1734 3090 66 2 5 chr1 150663962 150664359 -46531073 + MTA_Mm LTR MaLR 1 396 0 2 1734 183 129 0 0 chr1 150665168 150665199 -46530233 + (TTAG)n Simple_repeat Simple_repeat 3 33 0 2 1734 828 349 92 15 chr1 150665705 150666107 -46529325 - Lx8 LINE L1 -7 7466 7034 2 1734 4542 108 9 4 chr1 150666147 150666823 -46528609 - L1_Mm LINE L1 -870 5013 4335 2 1734 4562 121 13 4 chr1 150666823 150667527 -46527905 + L1_Mus3 LINE L1 5914 6623 -15 2 1734 189 0 0 0 chr1 150667532 150667553 -46527879 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 2 1734 27 49 0 0 chr1 150667629 150667670 -46527762 + AT_rich Low_complexity Low_complexity 1 41 0 2 1734 675 350 80 22 chr1 150667808 150668132 -46527300 + MTE2b LTR MaLR 3 345 -34 2 1734 26 0 0 0 chr1 150669085 150669111 -46526321 + AT_rich Low_complexity Low_complexity 1 26 0 2 1734 189 0 0 0 chr1 150669155 150669176 -46526256 + (CTTA)n Simple_repeat Simple_repeat 1 21 0 2 1734 483 263 29 29 chr1 150669643 150669780 -46525652 - B1F SINE Alu 0 149 13 2 1734 2117 172 73 28 chr1 150670207 150670632 -46524800 - RLTR41 LTR ERV1 -2 444 1 2 1734 3321 137 50 2 chr1 150670705 150671247 -46524185 + Lx LINE L1 6086 6653 -1 2 1734 273 286 48 104 chr1 150671278 150671528 -46523904 - Lx8 LINE L1 -2 7471 7236 2 1734 1714 256 30 39 chr1 150671725 150672193 -46523239 - Lx6 LINE L1 0 7460 6997 2 1734 228 150 50 0 chr1 150672186 150672226 -46523206 + Lx6 LINE L1 6699 6740 -720 2 1734 2055 246 98 42 chr1 150672259 150672380 -46523052 - Lx9 LINE L1 -1 7643 7476 2 1734 336 83 0 0 chr1 150672380 150672428 -46523004 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1734 2055 246 98 42 chr1 150672428 150673041 -46522391 - Lx9 LINE L1 -169 7475 6868 2 1734 2930 167 126 2 chr1 150673038 150673643 -46521789 - Lx2 LINE L1 -533 6464 5785 2 1734 903 87 57 14 chr1 150673648 150673788 -46521644 - B1_Mus2 SINE Alu -1 146 1 2 1734 314 223 83 109 chr1 150673788 150673839 -46521593 - MT2B LTR ERVL -442 159 113 2 1734 2244 141 103 44 chr1 150673839 150674293 -46521139 + Lx2 LINE L1 6517 6997 0 2 1734 22 56 0 0 chr1 150674305 150674341 -46521091 + AT_rich Low_complexity Low_complexity 1 36 0 2 1734 836 261 20 0 chr1 150674344 150674539 -46520893 - Lx9 LINE L1 -792 6852 6654 2 1734 932 252 194 28 chr1 150674543 150674975 -46520457 + Lx9 LINE L1 6162 6634 -1010 2 1734 1872 128 58 23 chr1 150675297 150675642 -46519790 - Lx LINE L1 -3 6651 6295 2 1734 183 80 0 0 chr1 150675918 150675943 -46519489 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 2 1734 4720 152 12 32 chr1 150676114 150677006 -46518426 - Lx3A LINE L1 -6 6975 6102 2 1734 21 57 0 0 chr1 150677833 150677868 -46517564 + AT_rich Low_complexity Low_complexity 1 35 0 2 1734 191 116 0 44 chr1 150678160 150678205 -46517227 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1734 206 178 0 22 chr1 150678746 150678792 -46516640 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1734 254 312 0 0 chr1 150679118 150679198 -46516234 + T-rich Low_complexity Low_complexity 5 84 0 2 1734 3746 62 63 6 chr1 150679310 150679801 -46515631 - MURVY-LTR LTR ERV1 0 519 1 2 1734 245 27 0 51 chr1 150682319 150682358 -46513074 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1734 361 356 148 43 chr1 150682953 150683258 -46512174 + MER21B LTR ERV1 173 509 -354 3 1734 905 272 81 0 chr1 150683334 150683668 -46511764 + Lx9 LINE L1 7283 7643 -1 3 1734 186 191 0 0 chr1 150684145 150684192 -46511240 + A-rich Low_complexity Low_complexity 3 49 0 3 1734 198 103 0 0 chr1 150684310 150684339 -46511093 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1734 446 142 376 13 chr1 150684989 150685146 -46510286 - L1_Mus3 LINE L1 -14 6624 6411 3 1734 1077 88 0 20 chr1 150685158 150685308 -46510124 + B1_Mus1 SINE Alu 2 148 0 3 1734 252 0 0 0 chr1 150685629 150685657 -46509775 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1734 1782 56 0 0 chr1 150686006 150686219 -46509213 - L1Md_F2 LINE L1 -323 6259 6047 3 1734 2317 69 6 0 chr1 150686219 150686537 -46508895 + L1Md_F2 LINE L1 6261 6580 -2 3 1734 888 276 21 0 chr1 150686537 150686562 -46508870 - L1_Mus4 LINE L1 -597 6039 6010 3 1734 234 0 0 0 chr1 150686899 150686925 -46508507 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1734 243 0 0 0 chr1 150687516 150687543 -46507889 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1734 611 60 0 12 chr1 150689384 150689469 -46505963 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 3 1734 289 326 33 0 chr1 150689619 150689711 -46505721 + B4A SINE B4 3 97 -195 3 1734 672 13 0 0 chr1 150689836 150689913 -46505519 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1734 351 268 29 11 chr1 150690532 150690706 -46504726 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1734 277 294 20 0 chr1 150690656 150690758 -46504674 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 3 1734 22 0 0 0 chr1 150692045 150692067 -46503365 + AT_rich Low_complexity Low_complexity 1 22 0 3 1734 264 30 0 0 chr1 150692178 150692211 -46503221 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3 1734 447 19 0 0 chr1 150692252 150692304 -46503128 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1734 657 299 86 0 chr1 150692456 150692653 -46502779 + ID_B1 SINE B4 3 216 -8 3 1734 502 276 60 6 chr1 150692736 150692904 -46502528 - Lx9 LINE L1 -289 7355 7179 3 1734 185 0 0 39 chr1 150693065 150693091 -46502341 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1734 181 333 68 34 chr1 150693413 150693531 -46501901 + L2 LINE L2 2559 2680 -739 3 1734 22 0 0 0 chr1 150693698 150693720 -46501712 + AT_rich Low_complexity Low_complexity 1 22 0 3 1734 668 181 14 20 chr1 150694424 150694571 -46500861 - Lx4A LINE L1 0 7058 6913 3 1734 778 274 14 14 chr1 150694863 150695078 -46500354 - B3 SINE B2 -1 215 1 3 1734 207 146 0 0 chr1 150695589 150695630 -46499802 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1734 393 136 0 0 chr1 150695713 150695779 -46499653 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1734 231 36 0 0 chr1 150695779 150695807 -46499625 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1734 409 340 106 19 chr1 150696211 150696418 -46499014 - MLT1H1 LTR MaLR -4 551 327 3 1734 24 0 0 0 chr1 150697537 150697561 -46497871 + AT_rich Low_complexity Low_complexity 1 24 0 3 1734 315 208 0 89 chr1 150699684 150699763 -46495669 + B1_Mur3 SINE Alu 78 149 0 3 1734 4193 51 2 10 chr1 150701840 150702356 -46493076 - LTRIS3 LTR ERV1 0 512 1 3 1734 377 360 69 38 chr1 150705477 150705795 -46489637 - MT2A LTR ERVL -113 420 93 3 1734 1341 128 192 24 chr1 150707207 150707555 -46487877 + Lx2 LINE L1 6765 6971 -26 3 1734 279 0 0 0 chr1 150707555 150707586 -46487846 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1734 8362 26 0 1 chr1 150708005 150709609 -46485823 - L1Md_T LINE L1 -3 6579 4977 3 1734 296 304 13 0 chr1 150709920 150709999 -46485433 - ID SINE ID -137 87 8 3 1734 243 276 143 0 chr1 150711137 150711235 -46484197 + PB1D9 SINE Alu 2 113 -7 3 1734 248 53 26 0 chr1 150711269 150711307 -46484125 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1734 405 368 36 12 chr1 150711311 150711476 -46483956 - B3 SINE B2 -40 176 8 3 1734 453 293 0 22 chr1 150711800 150711978 -46483454 + (GTATG)n Simple_repeat Simple_repeat 3 176 0 3 1734 282 373 110 50 chr1 150712817 150713280 -46482152 - L2a LINE L2 -9 3417 2927 3 1734 313 159 14 0 chr1 150713593 150713662 -46481770 - Lx9 LINE L1 -5 7639 7570 3 1734 1231 283 82 5 chr1 150714680 150715056 -46480376 + MTD LTR MaLR 1 405 -14 3 1734 562 338 71 15 chr1 150715285 150715552 -46479880 + B4A SINE B4 1 282 -10 3 1734 486 173 35 96 chr1 150715779 150715877 -46479555 + RMER17C LTR ERVK 91 188 -222 3 1734 1154 60 12 0 chr1 150715877 150716044 -46479388 + (TCTCTG)n Simple_repeat Simple_repeat 6 174 0 3 1734 486 173 35 96 chr1 150716044 150716143 -46479289 + RMER17C LTR ERVK 189 276 -134 3 1734 214 246 29 0 chr1 150717085 150717154 -46478278 + A-rich Low_complexity Low_complexity 3 73 0 3 1734 646 244 194 0 chr1 150717272 150717452 -46477980 - B3 SINE B2 0 216 2 3 1734 26 117 0 0 chr1 150717606 150717751 -46477681 + AT_rich Low_complexity Low_complexity 1 145 0 3 1734 33 43 0 0 chr1 150718594 150718641 -46476791 + AT_rich Low_complexity Low_complexity 1 47 0 3 1734 24 0 0 0 chr1 150718794 150718818 -46476614 + AT_rich Low_complexity Low_complexity 1 24 0 3 1734 31 58 0 0 chr1 150719800 150719852 -46475580 + AT_rich Low_complexity Low_complexity 1 52 0 3 1734 706 298 4 92 chr1 150719853 150720082 -46475350 - B3 SINE B2 0 216 8 3 1734 1593 175 83 64 chr1 150720724 150721084 -46474348 - ORR1B2 LTR MaLR 0 367 1 3 1734 28 48 0 0 chr1 150721693 150721735 -46473697 + AT_rich Low_complexity Low_complexity 1 42 0 3 1734 456 305 74 56 chr1 150722080 150722295 -46473137 + LTR53 LTR ERVL 15 233 -286 3 1734 296 326 91 23 chr1 150722376 150722508 -46472924 + LTR53 LTR ERVL 366 506 -13 3 1734 1555 62 5 5 chr1 150722549 150722760 -46472672 - L1Md_F3 LINE L1 -16 6568 6358 3 1734 3766 77 0 11 chr1 150722888 150723415 -46472017 - L1Md_F2 LINE L1 0 6582 6062 3 1734 4315 104 9 3 chr1 150724310 150724945 -46470487 - L1_Mus3 LINE L1 0 6638 6000 3 1734 41145 5 0 1 chr1 150725067 150731444 -46463988 - L1Md_A LINE L1 0 6582 214 3 1734 22 35 0 0 chr1 150731446 150731475 -46463957 + AT_rich Low_complexity Low_complexity 1 29 0 3 1734 198 0 0 0 chr1 150731579 150731601 -46463831 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 1734 951 62 70 0 chr1 150731682 150731810 -46463622 - B1_Mm SINE Alu -9 138 2 3 1734 330 26 0 0 chr1 150731828 150731867 -46463565 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1734 253 343 11 58 chr1 150731867 150732047 -46463385 - Lx7 LINE L1 -383 7313 7142 3 1734 609 191 26 9 chr1 150732090 150732206 -46463226 + Lx4B LINE L1 6170 6287 -771 3 1734 1301 212 26 42 chr1 150732209 150732585 -46462847 - RMER17B LTR ERVK -679 279 1 3 216 3784 180 33 29 chr1 150732587 150733355 -46462077 + Lx4B LINE L1 6284 7054 -4 3 1735 1799 260 67 6 chr1 150733423 150733903 -46461529 - Lx7 LINE L1 -650 7046 6538 3 1735 1859 250 32 16 chr1 150733879 150734445 -46460987 - L1_Mur3 LINE L1 -447 5433 4859 3 1735 492 281 85 132 chr1 150734515 150735207 -46460225 - Lx9 LINE L1 -27 7617 6958 3 1735 464 313 20 10 chr1 150735207 150735407 -46460025 + Lx9 LINE L1 6758 6959 -685 3 1735 2412 268 26 11 chr1 150735645 150736263 -46459169 - Lx9 LINE L1 -592 7052 6426 3 1735 1600 258 66 6 chr1 150736430 150736972 -46458460 + Lx9 LINE L1 7021 7595 -49 3 1735 491 315 22 27 chr1 150737276 150737459 -46457973 - B3A SINE B2 -16 182 1 3 1735 262 147 14 14 chr1 150738566 150738635 -46456797 + CT-rich Low_complexity Low_complexity 3 71 0 3 1735 24 91 0 0 chr1 150738804 150738870 -46456562 + AT_rich Low_complexity Low_complexity 1 66 0 3 1735 644 220 22 15 chr1 150738887 150739021 -46456411 - B1_Mur4 SINE Alu -13 137 3 3 1735 198 229 66 0 chr1 150740332 150740393 -46455039 - L3b LINE CR1 -266 216 152 3 1735 2158 37 86 0 chr1 150740504 150740773 -46454659 + RLTR10B LTR ERVK 1 292 0 3 1735 222 116 0 0 chr1 150741734 150741777 -46453655 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1735 944 103 66 7 chr1 150741796 150741933 -46453499 - B1_Mus1 SINE Alu -2 146 2 3 1735 1490 197 38 6 chr1 150742205 150742521 -46452911 - ORR1A3 LTR MaLR 0 326 1 3 1735 286 202 263 0 chr1 150742756 150742855 -46452577 + L1MC2 LINE L1 6190 6314 -30 3 1735 210 37 0 0 chr1 150742881 150742908 -46452524 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 3 1735 349 279 78 35 chr1 150743076 150743217 -46452215 + Lx9 LINE L1 7133 7279 -365 3 1735 21 0 0 0 chr1 150743459 150743480 -46451952 + AT_rich Low_complexity Low_complexity 1 21 0 3 1735 5558 137 10 3 chr1 150743759 150745031 -46450401 + Lx2 LINE L1 5161 6440 -557 3 1735 476 149 0 0 chr1 150745031 150745118 -46450314 + Lx2 LINE L1 6556 6642 -12 3 1735 210 143 0 0 chr1 150745225 150745260 -46450172 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1735 7802 151 15 8 chr1 150745262 150746966 -46448466 - Lx3B LINE L1 -3 6970 5255 3 1735 442 306 0 0 chr1 150747305 150747429 -46448003 + Lx6 LINE L1 7182 7305 -155 3 1735 1163 107 0 6 chr1 150747435 150747614 -46447818 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1735 228 267 10 118 chr1 150747624 150747726 -46447706 + RMER4A LTR ERVK 346 436 -30 3 1735 281 143 36 0 chr1 150747726 150747782 -46447650 + Lx6 LINE L1 7377 7434 -26 3 1735 275 138 35 0 chr1 150747806 150747864 -46447568 + A-rich Low_complexity Low_complexity 4 63 0 3 1735 233 335 101 83 chr1 150748557 150748785 -46446647 + RMER15 LTR ERVL 296 527 -48 3 1735 217 352 0 0 chr1 150749001 150749072 -46446360 - MIRb SINE MIR -30 238 168 3 1735 475 310 123 34 chr1 150749715 150750072 -46445360 + Lx8 LINE L1 7074 7462 -11 3 1735 809 166 181 56 chr1 150750775 150750969 -46444463 + Lx7 LINE L1 7417 7630 -66 3 1735 495 0 0 0 chr1 150750969 150751024 -46444408 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1735 809 166 181 56 chr1 150751024 150751078 -46444354 + Lx7 LINE L1 7631 7696 0 3 1735 27 29 0 0 chr1 150752325 150752359 -46443073 + AT_rich Low_complexity Low_complexity 1 34 0 3 1735 227 345 61 35 chr1 150753647 150753761 -46441671 + PB1D10 SINE Alu 1 117 0 4 1735 234 164 0 0 chr1 150754264 150754319 -46441113 + GA-rich Low_complexity Low_complexity 2 56 0 4 1735 216 0 0 0 chr1 150754737 150754761 -46440671 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1735 739 289 128 45 chr1 150755153 150755617 -46439815 + MER44C DNA MER2_type 240 732 -1 4 1735 1251 188 204 3 chr1 150755764 150756063 -46439369 - ORR1B2 LTR MaLR -3 364 6 4 1735 372 287 12 107 chr1 150756522 150756690 -46438742 - RMER4B LTR ERVK -422 163 12 4 1735 245 255 0 19 chr1 150756876 150756928 -46438504 - RSINE1 SINE B4 -98 67 17 4 1735 491 259 30 0 chr1 150756945 150757080 -46438352 - Lx9 LINE L1 -219 7425 7287 4 1735 225 0 0 0 chr1 150757487 150757512 -46437920 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1735 1316 190 106 20 chr1 150758182 150758483 -46436949 + ORR1A2 LTR MaLR 1 327 0 4 1735 24 53 0 0 chr1 150758710 150758748 -46436684 + AT_rich Low_complexity Low_complexity 1 38 0 4 1735 198 0 0 0 chr1 150758861 150758883 -46436549 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1735 234 0 0 0 chr1 150758936 150758962 -46436470 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1735 249 119 0 0 chr1 150759015 150759057 -46436375 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1735 27 103 0 0 chr1 150759156 150759253 -46436179 + AT_rich Low_complexity Low_complexity 1 97 0 4 1735 24 0 0 0 chr1 150759967 150759991 -46435441 + AT_rich Low_complexity Low_complexity 1 24 0 4 1735 234 62 0 0 chr1 150760564 150760596 -46434836 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1735 2075 192 47 24 chr1 150761414 150761955 -46433477 + Lx5 LINE L1 5442 6002 -1048 4 1735 219 336 64 24 chr1 150762448 150762573 -46432859 + L2 LINE L2 2828 2957 -462 4 1735 4154 112 25 5 chr1 150762909 150763518 -46431914 + L1_Mus4 LINE L1 5929 6549 -87 4 1735 189 48 45 45 chr1 150763828 150763872 -46431560 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1735 1153 221 139 27 chr1 150764168 150764498 -46430934 + ORR1D2 LTR MaLR 1 367 -3 4 1735 452 32 16 0 chr1 150765668 150765730 -46429702 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1735 387 0 0 0 chr1 150765730 150765772 -46429660 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1735 449 360 80 0 chr1 150766130 150766419 -46429013 + MamGyp-int LTR Gypsy 2417 2728 -2334 4 1735 527 351 59 59 chr1 150766422 150766725 -46428707 + MLT1J2 LTR MaLR 1 303 -145 4 1735 2084 180 60 11 chr1 150766796 150767287 -46428145 + RMER4B LTR ERVK 17 584 -1 4 1735 340 272 137 53 chr1 150768718 150769017 -46426415 - L1MC2 LINE L1 -19 6325 6002 4 1735 1165 301 57 12 chr1 150769092 150769493 -46425939 - MTD LTR MaLR 0 419 1 4 1735 320 214 0 8 chr1 150769521 150769639 -46425793 + CT-rich Low_complexity Low_complexity 2 118 0 4 1735 304 342 52 7 chr1 150769639 150769792 -46425640 - L1MC2 LINE L1 -510 5834 5675 4 1735 294 50 0 0 chr1 150769793 150769833 -46425599 + (GTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1735 431 218 88 8 chr1 150769834 150769959 -46425473 - B1F SINE Alu -14 135 1 4 1735 5178 151 39 2 chr1 150769983 150770865 -46424567 + Lx2 LINE L1 6084 6997 0 4 1735 399 316 65 35 chr1 150771167 150771646 -46423786 - L1MC2 LINE L1 -822 5324 4832 4 1735 900 292 57 20 chr1 150771682 150772026 -46423406 + MTD LTR MaLR 1 362 -38 4 1735 518 392 123 4 chr1 150772235 150772496 -46422936 - B4A SINE B4 0 292 1 4 1735 26 74 0 0 chr1 150772983 150773037 -46422395 + AT_rich Low_complexity Low_complexity 1 54 0 4 1735 54 16 0 0 chr1 150773117 150773178 -46422254 + AT_rich Low_complexity Low_complexity 1 61 0 4 1735 23 0 0 0 chr1 150773253 150773276 -46422156 + AT_rich Low_complexity Low_complexity 1 23 0 4 1735 2909 74 5 5 chr1 150774980 150775376 -46420056 - MTA_Mm LTR MaLR 0 396 1 4 1735 6819 101 20 72 chr1 150775376 150776533 -46418899 - MTA_Mm-int LTR MaLR 0 1098 2 4 1735 2637 97 12 42 chr1 150776534 150776942 -46418490 - MTA_Mm LTR MaLR 0 396 1 4 1735 464 223 42 54 chr1 150776984 150777150 -46418282 - RLTR43A LTR ERVK 0 364 201 4 1735 27 29 0 0 chr1 150777942 150777976 -46417456 + AT_rich Low_complexity Low_complexity 1 34 0 4 1735 180 77 0 0 chr1 150778564 150778590 -46416842 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4 1735 223 207 0 17 chr1 150778837 150778896 -46416536 + T-rich Low_complexity Low_complexity 4 61 0 4 1735 639 344 93 19 chr1 150778941 150779404 -46416028 - Lx8 LINE L1 -1 7472 6976 4 1735 3357 174 62 11 chr1 150780078 150780723 -46414709 - Lx2B LINE L1 -2 6998 6321 4 1735 4324 133 4 26 chr1 150781014 150781837 -46413595 + Lx LINE L1 5480 6593 -457 4 1735 1332 246 86 16 chr1 150782150 150782534 -46412898 + Lx LINE L1 6351 6761 -699 4 1735 354 164 16 0 chr1 150782764 150782825 -46412607 - B3 SINE B2 -154 62 1 4 1735 576 65 0 0 chr1 150782859 150782936 -46412496 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1735 445 376 13 7 chr1 150782942 150783092 -46412340 - RSINE1 SINE B4 -11 154 4 4 1735 180 0 0 0 chr1 150783801 150783821 -46411611 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1735 306 299 22 22 chr1 150784092 150784181 -46411251 - MIRc SINE MIR -72 196 108 4 1735 243 298 0 35 chr1 150784181 150784268 -46411164 - MLT1H1 LTR MaLR -222 333 250 4 1735 235 356 30 22 chr1 150784760 150784895 -46410537 - MIR3 SINE MIR -14 194 59 4 1735 303 28 0 0 chr1 150785143 150785179 -46410253 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1735 425 254 109 45 chr1 150786642 150786844 -46408588 - MIRc SINE MIR -16 252 38 4 1735 344 330 10 0 chr1 150788743 150788843 -46406589 + RSINE1 SINE B4 5 105 -60 4 1735 606 191 0 0 chr1 150789675 150789801 -46405631 + (TA)n Simple_repeat Simple_repeat 2 127 0 4 1735 198 0 0 0 chr1 150789801 150789823 -46405609 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1735 546 174 164 8 chr1 150790356 150790478 -46404954 - B1_Mur4 SINE Alu -9 141 1 4 1735 760 305 31 24 chr1 150791167 150791456 -46403976 + Lx8 LINE L1 6964 7254 -219 4 1735 282 56 0 0 chr1 150791509 150791545 -46403887 + (CATA)n Simple_repeat Simple_repeat 3 38 0 4 1735 229 305 0 0 chr1 150792308 150792367 -46403065 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1735 2507 181 21 8 chr1 150792490 150792976 -46402456 - Lx LINE L1 -5 6649 6158 4 1735 1312 71 16 27 chr1 150792978 150793165 -46402267 + B2_Mm2 SINE B2 2 186 -9 4 1735 219 139 0 0 chr1 150793523 150793559 -46401873 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1735 1382 54 16 0 chr1 150793582 150793766 -46401666 - L1Md_F3 LINE L1 -14 6570 6384 4 1735 553 248 8 24 chr1 150793767 150793891 -46401541 + URR1A DNA MER1_type 13 134 -92 4 1735 5337 220 37 18 chr1 150793902 150795208 -46400224 - L1_Mur3 LINE L1 -1193 4687 3358 4 1735 1183 127 22 0 chr1 150795208 150795389 -46400043 + B2_Mm2 SINE B2 1 185 -10 4 1735 5337 220 37 18 chr1 150795389 150795562 -46399870 - L1_Mur3 LINE L1 -2523 3357 3180 4 1735 2154 284 94 27 chr1 150795558 150796402 -46399030 - L1_Mur3 LINE L1 -6448 1280 381 4 1735 263 29 0 0 chr1 150796407 150796442 -46398990 + B1_Mus2 SINE Alu 94 128 -19 4 1735 825 40 0 0 chr1 150796442 150796543 -46398889 + (GAA)n Simple_repeat Simple_repeat 2 102 0 4 1735 28 48 0 0 chr1 150797587 150797629 -46397803 + AT_rich Low_complexity Low_complexity 1 42 0 4 1735 1740 57 0 13 chr1 150798186 150798418 -46397014 + L1Md_F2 LINE L1 6354 6582 0 4 1735 282 73 0 0 chr1 150798813 150798854 -46396578 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1735 2112 159 82 24 chr1 150798854 150799279 -46396153 + Lx LINE L1 6205 6654 0 4 1735 331 336 56 28 chr1 150799402 150799546 -46395886 + LTR16A LTR ERVL 203 350 -101 4 1735 405 0 0 0 chr1 150800363 150800408 -46395024 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1735 414 0 0 0 chr1 150800617 150800663 -46394769 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1735 1486 248 52 15 chr1 150801097 150801503 -46393929 + MTC LTR MaLR 1 421 0 4 1735 198 91 0 0 chr1 150801721 150801754 -46393678 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 1735 3713 60 0 0 chr1 150801868 150802333 -46393099 + L1_Mus1 LINE L1 6103 6567 0 4 1735 22 0 0 0 chr1 150802679 150802701 -46392731 + AT_rich Low_complexity Low_complexity 1 22 0 4 1735 416 283 52 31 chr1 150803393 150803586 -46391846 - B3A SINE B2 0 198 2 4 1735 27 62 0 0 chr1 150803624 150803672 -46391760 + AT_rich Low_complexity Low_complexity 1 48 0 4 1735 1528 38 0 0 chr1 150804078 150804263 -46391169 - L1Md_F2 LINE L1 -681 5901 5717 4 1735 4745 76 2 2 chr1 150804263 150804894 -46390538 + L1Md_F2 LINE L1 5952 6582 0 4 1735 27 62 0 0 chr1 150806399 150806447 -46388985 + AT_rich Low_complexity Low_complexity 1 48 0 4 1735 571 136 18 0 chr1 150807241 150807351 -46388081 + (TA)n Simple_repeat Simple_repeat 1 112 0 4 1735 11285 109 26 51 chr1 150807674 150807776 -46387656 + RLTR22_Mur LTR ERVK 1 87 -1761 4 1735 1164 41 0 26 chr1 150807776 150807927 -46387505 - B1_Mus2 SINE Alu 0 147 1 4 1735 11285 109 26 51 chr1 150807927 150809223 -46386209 + RLTR22_Mur LTR ERVK 88 1342 -506 4 1735 381 43 0 0 chr1 150809223 150809270 -46386162 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1735 11285 109 26 51 chr1 150809270 150809757 -46385675 + RLTR22_Mur LTR ERVK 1343 1839 -9 4 1735 363 327 105 40 chr1 150809849 150810126 -46385306 - Lx7 LINE L1 -421 7275 6981 4 1735 1791 242 47 19 chr1 150810430 150810901 -46384531 - Lx5 LINE L1 -690 6360 5877 4 1735 2186 236 75 85 chr1 150810898 150811601 -46383831 + Lx5 LINE L1 6355 7050 0 4 1735 33 0 0 0 chr1 150812098 150812131 -46383301 + AT_rich Low_complexity Low_complexity 1 33 0 4 1735 294 148 0 0 chr1 150812257 150812311 -46383121 + (ATG)n Simple_repeat Simple_repeat 3 56 0 4 1735 2992 71 8 5 chr1 150812992 150813387 -46382045 + MTA_Mm LTR MaLR 1 396 0 4 1735 7431 100 12 3 chr1 150813387 150814473 -46380959 + MTA_Mm-int LTR MaLR 1 1096 -2 4 1735 2663 91 23 5 chr1 150814475 150814864 -46380568 + MTA_Mm LTR MaLR 1 396 0 4 1735 809 40 10 0 chr1 150814866 150814967 -46380465 + MTA_Mm LTR MaLR 295 396 0 4 1735 258 136 0 0 chr1 150815301 150815345 -46380087 + (TCC)n Simple_repeat Simple_repeat 3 46 0 4 1735 563 148 20 26 chr1 150815347 150815500 -46379932 + CT-rich Low_complexity Low_complexity 2 153 0 4 1735 342 151 0 19 chr1 150816185 150816239 -46379193 - ID4_ SINE ID -14 69 17 4 1735 217 365 138 24 chr1 150816393 150816764 -46378668 + L2 LINE L2 2291 2703 -716 4 1735 4646 56 11 11 chr1 150818184 150818798 -46376634 + L1Md_F2 LINE L1 5968 6581 -1 4 1735 4329 51 2 11 chr1 150818802 150819353 -46376079 + L1Md_F2 LINE L1 6037 6582 0 4 1735 675 131 29 12 chr1 150819385 150819555 -46375877 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 5 1735 465 104 0 0 chr1 150819649 150819726 -46375706 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 5 1735 2476 256 96 49 chr1 150820850 150821137 -46374295 - L1_Rod LINE L1 -314 5533 5236 5 1735 232 25 49 24 chr1 150821137 150821178 -46374254 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 5 1735 2476 256 96 49 chr1 150821178 150822124 -46373308 - L1_Rod LINE L1 -612 5235 4243 5 1735 949 288 20 20 chr1 150822157 150822484 -46372948 + Lx8 LINE L1 5545 5920 -1553 5 1735 222 37 0 0 chr1 150824930 150824957 -46370475 + (GGA)n Simple_repeat Simple_repeat 2 28 0 5 1735 2874 68 0 21 chr1 150826528 150826916 -46368516 + L1_Mus2 LINE L1 6187 6566 0 5 1735 189 0 0 0 chr1 150827246 150827267 -46368165 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5 1735 252 329 99 39 chr1 150827821 150828131 -46367301 + L2a LINE L2 2919 3246 -180 5 1735 1065 94 0 0 chr1 150828936 150829074 -46366358 + B1_Mm SINE Alu 1 138 -9 5 1735 315 0 0 0 chr1 150829074 150829109 -46366323 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1735 203 175 0 0 chr1 150829111 150829151 -46366281 + A-rich Low_complexity Low_complexity 1 40 0 5 1735 21 0 0 0 chr1 150829204 150829225 -46366207 + AT_rich Low_complexity Low_complexity 1 21 0 5 1735 333 326 0 10 chr1 150829803 150829899 -46365533 - B4A SINE B4 -197 95 1 5 1735 1116 134 48 0 chr1 150830974 150831160 -46364272 + B2_Mm2 SINE B2 1 195 0 5 1735 340 245 82 120 chr1 150831415 150831573 -46363859 + HAL1-3A_ME LINE L1 1973 2124 -734 5 1735 26 0 0 0 chr1 150832151 150832177 -46363255 + AT_rich Low_complexity Low_complexity 1 26 0 5 1735 25 0 0 0 chr1 150832552 150832577 -46362855 + AT_rich Low_complexity Low_complexity 1 25 0 5 1735 279 250 98 16 chr1 150832630 150832752 -46362680 - L1MA6 LINE L1 -26 6274 6143 5 1735 525 44 0 0 chr1 150832839 150832907 -46362525 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1735 450 325 42 23 chr1 150833354 150833764 -46361668 + L1MB2 LINE L1 5649 6077 -103 5 1735 271 310 0 14 chr1 150834143 150834215 -46361217 + PB1D10 SINE Alu 13 83 -34 5 1735 402 57 0 0 chr1 150834215 150834268 -46361164 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1735 207 0 0 0 chr1 150835430 150835453 -46359979 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1735 696 24 0 0 chr1 150836579 150836661 -46358771 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1735 768 263 67 127 chr1 150836799 150837279 -46358153 + RLTR12B LTR ERVK 47 497 -31 5 1735 203 77 74 37 chr1 150838198 150838252 -46357180 + T-rich Low_complexity Low_complexity 2 57 0 5 1735 21 89 0 0 chr1 150838364 150838420 -46357012 + AT_rich Low_complexity Low_complexity 1 56 0 5 1735 363 184 132 0 chr1 150838988 150839064 -46356368 - URR1B DNA MER1_type -137 88 3 5 1735 22 0 0 0 chr1 150839443 150839465 -46355967 + AT_rich Low_complexity Low_complexity 1 22 0 5 1735 356 325 18 29 chr1 150839612 150839783 -46355649 + MLT1B LTR MaLR 1 169 -221 5 1735 313 373 0 42 chr1 150841385 150841550 -46353882 + MIRb SINE MIR 58 215 -53 5 1735 2940 265 69 45 chr1 150842398 150842687 -46352745 + Lx6 LINE L1 6497 6764 -696 5 1735 199 0 65 0 chr1 150842687 150842718 -46352714 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1735 2940 265 69 45 chr1 150842718 150843369 -46352063 + Lx6 LINE L1 6765 7460 0 5 1735 2835 229 93 64 chr1 150843373 150843828 -46351604 + Lx7 LINE L1 6764 7258 -438 5 1735 1271 142 27 14 chr1 150843828 150844050 -46351382 - Lx LINE L1 -13 6641 6417 5 1735 2835 229 93 64 chr1 150844050 150844420 -46351012 + Lx7 LINE L1 7259 7613 -83 5 1735 252 275 75 61 chr1 150844558 150844705 -46350727 + LTR52-int LTR ERVL 97 245 -3311 5 1735 216 0 0 0 chr1 150845179 150845203 -46350229 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 5 1735 502 267 130 26 chr1 150845389 150845620 -46349812 - ORR1E LTR MaLR -7 352 98 5 1735 204 111 0 0 chr1 150845775 150845811 -46349621 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 5 1735 509 0 16 0 chr1 150846598 150846659 -46348773 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1735 306 0 0 0 chr1 150846783 150846817 -46348615 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1735 370 314 96 19 chr1 150847305 150847461 -46347971 + LTR52-int LTR ERVL 3018 3185 -371 5 1735 389 335 25 0 chr1 150847517 150847675 -46347757 + HERVL74-int LTR ERVL 3015 3176 -2509 5 1735 250 386 34 14 chr1 150847736 150847883 -46347549 + MT2A LTR ERVL 93 242 -291 5 1735 182 120 51 39 chr1 150848020 150848098 -46347334 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1735 336 264 15 66 chr1 150848774 150848925 -46346507 + L1M2 LINE L1 5478 5622 -546 5 1735 559 316 68 0 chr1 150848927 150849133 -46346299 - MTEb LTR MaLR -3 376 157 5 1735 215 146 36 24 chr1 150849220 150849304 -46346128 + T-rich Low_complexity Low_complexity 4 88 0 5 1735 478 328 82 46 chr1 150849317 150849360 -46346072 - MTD LTR MaLR -68 351 305 5 1735 1022 275 37 43 chr1 150849360 150849736 -46345696 + ORR1D1 LTR MaLR 1 374 0 5 1735 478 335 77 45 chr1 150849736 150850002 -46345430 - MTD LTR MaLR -115 304 14 5 1735 1114 91 0 0 chr1 150850138 150850281 -46345151 + B1_Mus1 SINE Alu 1 143 -5 5 1735 227 328 16 94 chr1 150850616 150850683 -46344749 - MTEa LTR MaLR -8 371 311 5 1735 654 31 31 0 chr1 150850683 150850781 -46344651 - L1Md_F3 LINE L1 -2 6582 6482 5 1735 227 328 16 94 chr1 150850781 150850841 -46344591 - MTEa LTR MaLR -69 310 254 5 1735 3967 103 47 3 chr1 150852786 150853381 -46342051 - Lx3_Mus LINE L1 -8 7001 6381 5 1735 2492 128 30 0 chr1 150853381 150853781 -46341651 + Lx3_Mus LINE L1 5971 6382 -627 5 1735 1665 102 4 8 chr1 150853792 150854038 -46341394 - L1_Mus1 LINE L1 0 6567 6323 5 1735 365 116 14 0 chr1 150854147 150854216 -46341216 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 5 1735 546 29 0 0 chr1 150854496 150854564 -46340868 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1735 552 247 77 12 chr1 150854823 150854991 -46340441 + Lx7 LINE L1 5798 5976 -1720 5 1735 4117 256 96 14 chr1 150855006 150856164 -46339268 + Lx6 LINE L1 6191 7443 -17 5 1735 293 302 54 8 chr1 150856195 150856325 -46339107 - Lx7 LINE L1 -334 7362 7227 5 1735 1324 225 90 16 chr1 150856366 150856546 -46338886 - L1_Mur3 LINE L1 -3641 2239 2045 5 1735 495 0 0 0 chr1 150856546 150856601 -46338831 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 5 1735 1324 225 90 16 chr1 150856601 150856808 -46338624 - L1_Mur3 LINE L1 -3836 2044 1823 5 1735 328 171 35 0 chr1 150856823 150856901 -46338531 - L1_Mur3 LINE L1 -4365 1521 1441 5 1735 1872 280 27 58 chr1 150856900 150857473 -46337959 - L1_Mur3 LINE L1 -6880 848 293 5 1735 474 18 0 0 chr1 150857473 150857528 -46337904 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1735 1872 280 27 58 chr1 150857528 150857594 -46337838 - L1_Mur3 LINE L1 -7436 292 229 5 1735 23 0 0 0 chr1 150857707 150857730 -46337702 + AT_rich Low_complexity Low_complexity 1 23 0 5 1735 22 35 0 0 chr1 150859465 150859494 -46335938 + AT_rich Low_complexity Low_complexity 1 29 0 5 1735 1813 15 0 0 chr1 150859962 150860167 -46335265 + L1Md_A LINE L1 5382 5586 -297 5 1735 8864 11 0 0 chr1 150860167 150861163 -46334269 + L1Md_A LINE L1 5587 6582 0 5 1735 193 330 115 49 chr1 150861800 150862026 -46333406 - L2 LINE L2 -404 3015 2775 5 1735 4947 96 15 8 chr1 150862962 150863675 -46331757 + L1Md_F2 LINE L1 5864 6581 -1 5 1735 32 0 0 0 chr1 150863784 150863816 -46331616 + AT_rich Low_complexity Low_complexity 1 32 0 5 1736 336 336 67 22 chr1 150863948 150864173 -46331259 - L1MB4 LINE L1 -58 6122 5888 5 1736 25 51 0 0 chr1 150864234 150864273 -46331159 + AT_rich Low_complexity Low_complexity 1 39 0 5 1736 25 31 0 0 chr1 150864418 150864450 -46330982 + AT_rich Low_complexity Low_complexity 1 32 0 5 1736 485 333 14 29 chr1 150864614 150864753 -46330679 - ID_B1 SINE B4 -72 152 16 5 1736 243 259 16 49 chr1 150864699 150864760 -46330672 - BC1_Mm scRNA scRNA -83 69 11 5 1736 450 114 0 0 chr1 150864821 150864891 -46330541 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1736 360 265 180 20 chr1 150864964 150865114 -46330318 - ORR1E LTR MaLR -4 355 182 5 1736 555 227 115 19 chr1 150865668 150865825 -46329607 - ORR1E LTR MaLR -160 199 28 5 1736 367 301 27 108 chr1 150865855 150866041 -46329391 - B4A SINE B4 -114 178 8 5 1736 312 221 11 0 chr1 150866131 150866226 -46329206 - Lx9 LINE L1 -5 7639 7544 5 1736 1030 23 23 0 chr1 150866281 150866413 -46329019 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 5 1736 1761 209 58 42 chr1 150866444 150866965 -46328467 - RLTR31_Mur LTR ERVK 0 553 39 5 1736 327 25 0 0 chr1 150866965 150867005 -46328427 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1736 253 324 101 66 chr1 150867005 150867106 -46328326 - RLTR31_Mur LTR ERVK -334 119 23 5 1736 531 324 80 28 chr1 150867281 150867605 -46327827 - MER99 DNA hAT? -358 473 133 5 1736 216 0 0 0 chr1 150868301 150868325 -46327107 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 1736 645 14 0 0 chr1 150869790 150869864 -46325568 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1736 23 0 0 0 chr1 150870318 150870341 -46325091 + AT_rich Low_complexity Low_complexity 1 23 0 5 1736 1458 156 7 92 chr1 150870430 150870734 -46324698 - ORR1A4 LTR MaLR -51 278 1 5 1736 4037 183 127 85 chr1 150870734 150871852 -46323580 - ORR1A4-int LTR MaLR 0 1792 628 5 1736 345 265 60 0 chr1 150871814 150871897 -46323535 - B1_Mus2 SINE Alu -35 112 25 5 1736 533 160 10 29 chr1 150871913 150872016 -46323416 - MT2B LTR ERVL -348 253 153 5 1736 346 147 176 0 chr1 150872054 150872122 -46323310 - MERVL_2A-int LTR ERVL 0 5761 5682 5 1736 425 316 46 37 chr1 150872171 150872343 -46323089 - MurSatRep1 Unknown Unknown 0 2137 1981 5 1736 399 270 14 14 chr1 150872343 150872482 -46322950 - MMSAT4 Satellite Satellite 0 168 30 5 1736 425 316 46 37 chr1 150872482 150872595 -46322837 - MurSatRep1 Unknown Unknown -157 1980 1878 5 1736 469 253 13 13 chr1 150872595 150872747 -46322685 - MMSAT4 Satellite Satellite 0 168 17 5 1736 425 316 46 37 chr1 150872747 150872888 -46322544 - MurSatRep1 Unknown Unknown 0 1877 1747 5 1736 403 267 22 22 chr1 150872847 150872985 -46322447 - MMSAT4 Satellite Satellite 0 168 31 5 1736 427 127 0 0 chr1 150872983 150873046 -46322386 - MurSatRep1 Unknown Unknown -1128 1009 947 5 1736 895 116 0 0 chr1 150873046 150873175 -46322257 - MurSatRep1 Unknown Unknown -1397 740 612 5 1736 2474 57 42 0 chr1 150873602 150873936 -46321496 + L1Md_F3 LINE L1 6233 6580 -4 5 1736 252 242 44 29 chr1 150875438 150875506 -46319926 - ID2 SINE ID -13 70 2 5 1736 315 0 0 0 chr1 150875815 150875850 -46319582 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1736 21 82 0 0 chr1 150876633 150876682 -46318750 + AT_rich Low_complexity Low_complexity 1 49 0 5 1736 5835 105 35 8 chr1 150876955 150877838 -46317594 + Lx3_Mus LINE L1 6094 7000 -9 5 1736 291 54 0 0 chr1 150877991 150878028 -46317404 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1736 277 352 178 18 chr1 150878108 150878386 -46317046 - MLT1A0 LTR MaLR 0 374 28 6 1736 188 122 0 24 chr1 150879312 150879354 -46316078 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1736 2737 34 3 0 chr1 150879454 150879779 -46315653 - IAPLTR3 LTR ERVK 0 326 1 6 1736 25 51 0 0 chr1 150881185 150881224 -46314208 + AT_rich Low_complexity Low_complexity 1 39 0 6 1736 344 263 246 0 chr1 150881427 150881541 -46313891 - B1_Mur4 SINE Alu 0 150 9 6 1736 24 23 0 43 chr1 150882219 150882242 -46313190 + AT_rich Low_complexity Low_complexity 1 22 0 6 1736 2107 106 6 6 chr1 150882242 150882556 -46312876 + L1_Mus3 LINE L1 6322 6635 -3 6 1736 24 23 0 43 chr1 150882556 150882578 -46312854 + AT_rich Low_complexity Low_complexity 1 22 0 6 1736 206 136 23 0 chr1 150883199 150883243 -46312189 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 6 1736 1559 94 17 0 chr1 150883399 150883634 -46311798 + L1_Mus3 LINE L1 6398 6636 -2 6 1736 227 247 26 13 chr1 150884581 150884659 -46310773 - L1MC LINE L1 -881 5452 5374 6 1736 2625 307 86 17 chr1 150887658 150888806 -46306626 - Lx8 LINE L1 -1 7472 6246 6 1736 189 74 0 0 chr1 150888820 150888847 -46306585 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 6 1736 321 240 41 8 chr1 150888865 150888987 -46306445 + (TCTCTG)n Simple_repeat Simple_repeat 5 130 0 6 1736 275 145 0 14 chr1 150888990 150889060 -46306372 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1736 360 0 0 0 chr1 150889060 150889100 -46306332 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1736 330 351 29 15 chr1 150890384 150890520 -46304912 + ID_B1 SINE B4 81 218 -6 6 1736 21 0 0 0 chr1 150890695 150890716 -46304716 + AT_rich Low_complexity Low_complexity 1 21 0 6 1736 236 130 22 0 chr1 150890742 150890788 -46304644 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1736 2623 262 123 32 chr1 150890832 150891750 -46303682 - Lx9 LINE L1 -354 7290 6289 6 1736 665 212 40 43 chr1 150891839 150892019 -46303413 - ORR1C2 LTR MaLR 0 384 174 6 1736 409 241 34 11 chr1 150892022 150892110 -46303322 + RLTR20C LTR ERVK 445 534 0 6 1736 462 294 22 7 chr1 150892201 150892338 -46303094 - Lx9 LINE L1 -1712 5932 5794 6 1736 365 239 127 8 chr1 150892374 150892492 -46302940 + L1_Rod LINE L1 5639 5770 -77 6 1736 7310 78 0 2 chr1 150894236 150895188 -46300244 - L1_Mus1 LINE L1 -6 6561 5612 6 1736 833 296 76 18 chr1 150895531 150895806 -46299626 + MTC LTR MaLR 52 342 -79 6 1736 25 0 0 0 chr1 150895874 150895899 -46299533 + AT_rich Low_complexity Low_complexity 1 25 0 6 1736 982 303 47 52 chr1 150895919 150896532 -46298900 + Lx9 LINE L1 4295 4904 -943 6 1736 513 213 17 23 chr1 150896535 150896708 -46298724 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 6 1736 1971 227 48 22 chr1 150896710 150897349 -46298083 + Lx9 LINE L1 5286 5977 -1667 6 1736 279 0 0 0 chr1 150897398 150897429 -46298003 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1736 661 194 11 11 chr1 150897429 150897600 -46297832 + (CATATA)n Simple_repeat Simple_repeat 1 171 0 6 1736 29 60 0 0 chr1 150897666 150897716 -46297716 + AT_rich Low_complexity Low_complexity 1 50 0 6 1736 507 107 0 0 chr1 150897780 150897855 -46297577 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1736 5760 193 63 14 chr1 150897885 150899741 -46295691 + Lx2B LINE L1 5047 6985 -15 6 1736 424 129 0 0 chr1 150899901 150899971 -46295461 + Lx3B LINE L1 6898 6967 -6 6 1736 348 24 0 0 chr1 150899977 150900018 -46295414 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 1736 273 108 26 51 chr1 150900897 150900975 -46294457 + (CAGAGA)n Simple_repeat Simple_repeat 1 76 0 6 1736 785 189 6 0 chr1 150901777 150901946 -46293486 + CT-rich Low_complexity Low_complexity 3 172 0 6 1736 24 32 0 0 chr1 150902240 150902271 -46293161 + AT_rich Low_complexity Low_complexity 1 31 0 6 1736 351 0 0 0 chr1 150903515 150903554 -46291878 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1736 302 302 109 36 chr1 150903582 150903747 -46291685 + L1MC1 LINE L1 6145 6321 -12 6 1736 344 313 62 62 chr1 150903962 150904170 -46291262 + L1MC LINE L1 3253 3460 -2686 6 1736 2966 158 35 0 chr1 150904188 150904695 -46290737 - Lx2 LINE L1 -2 6995 6471 6 1736 219 69 0 0 chr1 150904727 150904756 -46290676 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1736 588 237 51 10 chr1 150905109 150905279 -46290153 - ORR1D1 LTR MaLR 0 379 207 6 1736 6460 97 15 1 chr1 150905283 150906196 -46289236 + L1_Mus4 LINE L1 5708 6633 -3 6 1736 415 272 35 17 chr1 150906200 150906316 -46289116 - ORR1D1 LTR MaLR -191 183 66 6 1736 1224 114 0 15 chr1 150906328 150906533 -46288899 - Lx LINE L1 -5 6649 6448 6 1736 1821 194 43 72 chr1 150906546 150907092 -46288340 - BGLII_B LTR ERVK -51 502 43 6 1736 259 257 13 39 chr1 150907099 150907176 -46288256 - ORR1D1 LTR MaLR -294 80 6 6 1736 253 326 20 77 chr1 150907486 150907682 -46287750 + L1M5 LINE L1 4424 4608 -1538 6 1736 23 0 0 0 chr1 150907867 150907890 -46287542 + AT_rich Low_complexity Low_complexity 1 23 0 6 1736 8131 40 2 2 chr1 150908018 150909191 -46286241 - L1Md_F2 LINE L1 -1 6581 5409 6 1736 857 154 0 21 chr1 150909337 150909576 -46285856 + (CA)n Simple_repeat Simple_repeat 1 233 0 6 1736 1690 126 11 4 chr1 150909748 150910019 -46285413 - L1Md_F2 LINE L1 -526 5357 5085 6 1736 5764 106 13 1 chr1 150910019 150910863 -46284569 + L1_Mus3 LINE L1 5783 6636 -2 6 1736 279 0 0 0 chr1 150910960 150910991 -46284441 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1736 378 0 0 0 chr1 150911307 150911349 -46284083 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1736 230 295 25 25 chr1 150912015 150912095 -46283337 - PB1D10 SINE Alu -16 101 22 6 1736 729 275 122 70 chr1 150912872 150913341 -46282091 + Lx9 LINE L1 6999 7491 -153 6 1736 458 359 0 39 chr1 150913714 150913917 -46281515 + MER20 DNA MER1_type 20 214 -5 6 1736 336 198 88 10 chr1 150913969 150914071 -46281361 - Lx4A LINE L1 0 7058 6949 6 1736 2128 198 113 17 chr1 150914740 150915326 -46280106 - RLTR26 LTR ERVK 0 642 1 6 1736 333 317 39 0 chr1 150915421 150915525 -46279907 + B3 SINE B2 103 210 -6 6 1736 22 0 0 0 chr1 150915527 150915549 -46279883 + AT_rich Low_complexity Low_complexity 1 22 0 6 1736 372 88 0 0 chr1 150916274 150916331 -46279101 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1736 26 30 0 0 chr1 150916415 150916448 -46278984 + AT_rich Low_complexity Low_complexity 1 33 0 6 1736 2923 224 98 9 chr1 150917088 150917719 -46277713 + L1_Mur3 LINE L1 529 1195 -6533 6 1736 438 20 0 0 chr1 150917719 150917770 -46277662 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1736 2923 177 111 30 chr1 150917770 150918101 -46277331 + L1_Mur3 LINE L1 1196 1552 -4328 6 1736 256 191 63 0 chr1 150918095 150918158 -46277274 - Lx9 LINE L1 -193 7451 7385 6 1736 279 0 0 0 chr1 150919820 150919851 -46275581 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1736 291 348 76 0 chr1 150920521 150920639 -46274793 + B1F SINE Alu 7 133 -16 6 1736 21 36 0 0 chr1 150921077 150921105 -46274327 + AT_rich Low_complexity Low_complexity 1 28 0 6 1736 2341 95 5 89 chr1 150921212 150921604 -46273828 + RLTR10D LTR ERVK 1 359 0 6 1736 1353 200 62 103 chr1 150921670 150922060 -46273372 - ORR1C1 LTR MaLR 0 378 5 6 1736 990 113 0 0 chr1 150922291 150922433 -46272999 + B2_Mm2 SINE B2 10 151 -44 6 1736 270 0 0 0 chr1 150922436 150922466 -46272966 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1736 244 73 0 0 chr1 150922471 150922512 -46272920 + Lx2 LINE L1 6957 6997 0 6 1736 26 64 0 0 chr1 150922767 150922814 -46272618 + AT_rich Low_complexity Low_complexity 1 47 0 6 1736 251 155 56 0 chr1 150923499 150923570 -46271862 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1736 438 20 0 0 chr1 150923934 150923985 -46271447 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1736 2106 126 3 58 chr1 150924013 150924359 -46271073 + ORR1A2 LTR MaLR 1 327 0 6 1736 196 363 15 75 chr1 150925419 150925553 -46269879 + L2b LINE L2 3207 3332 -43 6 1736 752 262 41 81 chr1 150925682 150926002 -46269430 - RLTR26 LTR ERVK -161 481 175 6 1736 341 304 52 49 chr1 150926095 150926382 -46269050 - RLTR15 LTR ERVK -30 329 42 6 1736 426 243 3 131 chr1 150926834 150927008 -46268424 + ORR1D2 LTR MaLR 201 365 -5 6 1736 186 167 0 0 chr1 150928496 150928532 -46266900 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1736 240 374 56 0 chr1 150929136 150929243 -46266189 + MIRc SINE MIR 79 191 -77 6 1736 480 303 0 15 chr1 150929271 150929405 -46266027 - B1F SINE Alu -17 132 1 6 1736 5115 115 34 24 chr1 150929884 150930722 -46264710 + Lx3A LINE L1 6120 6968 -13 6 1736 255 31 0 0 chr1 150930722 150930754 -46264678 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 6 1736 1033 103 0 0 chr1 150930778 150930924 -46264508 - B1_Mm SINE Alu 0 147 2 6 1736 34 24 0 0 chr1 150930961 150931002 -46264430 + AT_rich Low_complexity Low_complexity 1 41 0 6 1736 234 286 0 0 chr1 150932848 150932911 -46262521 + A-rich Low_complexity Low_complexity 1 63 0 6 1736 277 343 162 23 chr1 150934422 150934595 -46260837 - MER45C DNA Tip100 -695 258 62 6 1736 937 68 20 7 chr1 150934675 150934822 -46260610 + L1_Mus3 LINE L1 6483 6631 -7 6 1736 30 45 0 0 chr1 150935111 150935155 -46260277 + AT_rich Low_complexity Low_complexity 1 44 0 6 1736 259 254 53 37 chr1 150935817 150935922 -46259510 + L2a LINE L2 3291 3426 0 6 1736 497 339 0 0 chr1 150938491 150938618 -46256814 + ID_B1 SINE B4 95 221 -3 6 1736 421 220 20 0 chr1 150938744 150938844 -46256588 + Lx3B LINE L1 6868 6969 -4 6 1736 293 239 218 23 chr1 150939550 150939607 -46255825 + MER67D LTR ERV1 103 185 -329 6 1736 609 85 17 17 chr1 150939607 150939726 -46255706 + L1_Mus3 LINE L1 6518 6636 -2 6 1736 293 239 218 23 chr1 150939726 150939801 -46255631 + MER67D LTR ERV1 186 261 -253 6 1736 225 94 0 0 chr1 150943771 150943803 -46251629 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1736 2649 114 19 0 chr1 150944466 150944878 -46250554 - BGLII LTR ERVK 0 421 2 7 1736 362 283 9 54 chr1 150945063 150945175 -46250257 - PB1D10 SINE Alu -1 116 10 7 1736 1123 97 27 11 chr1 150945904 150946123 -46249309 - L1_Mus3 LINE L1 0 6638 6436 7 1736 1334 28 11 27 chr1 150946120 150946305 -46249127 + L1Md_F3 LINE L1 6401 6582 -2 7 1736 1081 209 13 113 chr1 150946618 150946936 -46248496 + Lx6 LINE L1 7165 7450 -10 7 1736 524 265 73 17 chr1 150946943 150947159 -46248273 - MER67C LTR ERV1 -428 283 52 7 1736 335 355 52 52 chr1 150947248 150947536 -46247896 + Lx8 LINE L1 7167 7454 -19 7 1736 30 27 0 0 chr1 150948720 150948757 -46246675 + AT_rich Low_complexity Low_complexity 1 37 0 7 1736 43 47 0 0 chr1 150949379 150949443 -46245989 + AT_rich Low_complexity Low_complexity 1 64 0 7 1736 333 236 67 0 chr1 150949595 150949684 -46245748 - Lx7 LINE L1 -361 7335 7241 7 1736 275 320 71 16 chr1 150950345 150950472 -46244960 + ID_B1 SINE B4 83 216 -8 7 1736 186 43 0 0 chr1 150951347 150951370 -46244062 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1736 414 273 45 15 chr1 150951746 150951880 -46243552 + MamRep4096 DNA hAT? 1 138 -288 7 1736 299 222 44 0 chr1 150952105 150952195 -46243237 + CT-rich Low_complexity Low_complexity 2 95 0 7 1736 534 303 28 0 chr1 150952549 150952694 -46242738 + ID_B1 SINE B4 73 221 -3 7 1736 1374 271 18 43 chr1 150952797 150953190 -46242242 - RMER10B LTR ERVL -11 387 5 7 1736 2162 246 42 53 chr1 150953618 150954188 -46241244 + Lx5 LINE L1 6484 7047 -3 7 1736 450 0 0 0 chr1 150954282 150954332 -46241100 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1736 321 325 53 24 chr1 150956497 150956667 -46238765 + L1MEf LINE L1 1426 1600 -4600 7 1736 227 284 2 71 chr1 150956873 150956961 -46238471 + MER5A1 DNA MER1_type 3 84 -82 7 1736 2133 144 16 12 chr1 150956982 150957535 -46237897 + Lx3A LINE L1 5824 6505 -476 7 1736 912 68 8 0 chr1 150957535 150957653 -46237779 - Lx3A LINE L1 -247 6734 6616 7 1736 438 20 0 0 chr1 150957653 150957704 -46237728 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1736 540 59 23 12 chr1 150957803 150957889 -46237543 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 7 1736 393 321 108 15 chr1 150959926 150960195 -46235237 - Lx8 LINE L1 -8 7465 7172 7 1736 611 261 37 45 chr1 150960217 150960575 -46234857 + Lx7 LINE L1 5596 5974 -1670 7 1736 375 231 99 0 chr1 150961203 150961294 -46234138 - B1_Mur4 SINE Alu -40 110 11 7 1736 323 349 0 64 chr1 150961377 150961533 -46233899 - B1F2 SINE Alu 0 149 4 7 1736 4854 103 28 8 chr1 150962704 150963421 -46232011 - Lx LINE L1 -10 6644 5914 7 1736 918 312 140 36 chr1 150964183 150964982 -46230450 + L1M4c LINE L1 246 1127 -5257 7 1736 251 278 9 134 chr1 150965050 150965083 -46230349 + MT2B2 LTR ERVL 155 224 -360 7 1736 290 294 44 0 chr1 150965083 150965151 -46230281 + B1F SINE Alu 17 87 -62 7 1736 251 278 9 134 chr1 150965151 150965162 -46230270 + MT2B2 LTR ERVL 225 252 -332 7 1736 304 345 35 28 chr1 150965162 150965305 -46230127 + L1M4c LINE L1 1208 1351 -5033 7 1736 510 133 0 0 chr1 150965342 150965432 -46230000 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1736 233 325 31 68 chr1 150965566 150965728 -46229704 + L1M4c LINE L1 1529 1684 -4700 7 1736 1375 303 26 20 chr1 150965863 150966318 -46229114 + Lx6 LINE L1 7003 7460 0 7 1736 342 306 97 60 chr1 150966817 150967199 -46228233 + L1M4c LINE L1 5555 5950 -469 7 1736 22 0 0 0 chr1 150967394 150967416 -46228016 + AT_rich Low_complexity Low_complexity 1 22 0 7 1736 378 401 25 53 chr1 150968640 150968922 -46226510 + B4 SINE B4 13 286 -6 7 1736 360 77 0 0 chr1 150968938 150968990 -46226442 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1736 4963 75 6 3 chr1 150969108 150969765 -46225667 - L1_Mus1 LINE L1 0 6567 5909 7 1736 24 53 0 0 chr1 150970051 150970089 -46225343 + AT_rich Low_complexity Low_complexity 1 38 0 7 1736 35 71 0 0 chr1 150970397 150970467 -46224965 + AT_rich Low_complexity Low_complexity 1 70 0 7 1736 303 93 0 0 chr1 150970607 150970650 -46224782 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1736 21 57 0 0 chr1 150970819 150970854 -46224578 + AT_rich Low_complexity Low_complexity 1 35 0 7 1736 5949 64 10 1 chr1 150970947 150971719 -46223713 - L1_Mus1 LINE L1 -6 6561 5783 7 1736 189 0 0 0 chr1 150971719 150971740 -46223692 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 7 1736 4704 68 7 0 chr1 150971740 150972347 -46223085 - L1Md_F2 LINE L1 0 6582 5972 7 1736 23 0 0 0 chr1 150973722 150973745 -46221687 + AT_rich Low_complexity Low_complexity 1 23 0 7 1736 3521 94 10 6 chr1 150973745 150974235 -46221197 - L1_Mm LINE L1 -16 5867 5376 7 1736 625 79 10 0 chr1 150974235 150974336 -46221096 + L1_Mus2 LINE L1 6464 6565 -1 7 1736 1728 150 44 16 chr1 150974454 150974773 -46220659 - ORR1A4 LTR MaLR -1 328 1 7 1736 405 86 0 0 chr1 150974773 150974831 -46220601 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1736 375 365 95 8 chr1 150974831 150975074 -46220358 - MLT2B1 LTR ERVL -9 511 248 7 1736 30 0 0 0 chr1 150975504 150975534 -46219898 + AT_rich Low_complexity Low_complexity 1 30 0 7 1736 207 88 0 0 chr1 150975751 150975785 -46219647 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1736 343 323 29 29 chr1 150976025 150976197 -46219235 - RMER15 LTR ERVL -108 467 296 7 1736 261 0 0 0 chr1 150976522 150976551 -46218881 + (TTAAA)n Simple_repeat Simple_repeat 2 30 0 7 1736 254 325 0 0 chr1 150977126 150977203 -46218229 + GA-rich Low_complexity Low_complexity 4 80 0 7 1736 293 253 0 0 chr1 150977226 150977301 -46218131 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1736 30 27 0 0 chr1 150977648 150977685 -46217747 + AT_rich Low_complexity Low_complexity 1 37 0 7 1736 222 37 0 0 chr1 150977768 150977795 -46217637 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1736 23 54 0 0 chr1 150977818 150977855 -46217577 + AT_rich Low_complexity Low_complexity 1 37 0 7 1736 430 349 41 14 chr1 150977894 150978112 -46217320 - MIR SINE MIR -37 225 2 7 1736 1301 108 43 0 chr1 150978625 150978811 -46216621 + B2_Mm2 SINE B2 2 195 0 7 1736 1603 189 7 0 chr1 150978848 150979150 -46216282 + L1_Mur2 LINE L1 4753 5056 -821 7 1736 22 0 0 0 chr1 150979258 150979280 -46216152 + AT_rich Low_complexity Low_complexity 1 22 0 7 1736 670 156 63 14 chr1 150980161 150980304 -46215128 + Lx LINE L1 6499 6648 -6 7 1736 1929 97 15 56 chr1 150980305 150980645 -46214787 + L1_Mus2 LINE L1 6241 6566 0 7 1736 606 51 0 0 chr1 150981034 150981112 -46214320 + (TC)n Simple_repeat Simple_repeat 2 79 0 7 1736 405 169 0 0 chr1 150981122 150981205 -46214227 + (CTATA)n Simple_repeat Simple_repeat 5 87 0 7 1736 1021 106 0 32 chr1 150981348 150981534 -46213898 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1736 216 0 0 0 chr1 150981534 150981557 -46213875 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 1736 22 0 0 0 chr1 150982697 150982719 -46212713 + AT_rich Low_complexity Low_complexity 1 22 0 7 1736 22 56 0 0 chr1 150982769 150982805 -46212627 + AT_rich Low_complexity Low_complexity 1 36 0 7 1736 357 149 122 0 chr1 150982863 150982937 -46212495 + Lx4A LINE L1 409 491 -6595 7 1736 1613 176 33 0 chr1 150982941 150983243 -46212189 + Lx4A LINE L1 6529 6840 -218 7 1736 380 183 14 0 chr1 150983236 150983307 -46212125 + Lx4A LINE L1 5805 5876 -1182 7 1736 2867 148 36 12 chr1 150983301 150983802 -46211630 + Lx4A LINE L1 6499 7011 -47 7 1736 2290 129 31 13 chr1 150983807 150984193 -46211239 + Lx LINE L1 6260 6652 -2 7 1736 809 267 63 16 chr1 150984193 150984448 -46210984 + Lx7 LINE L1 6989 7255 -441 7 1736 33900 80 7 5 chr1 150984454 150988830 -46206602 - L1Md_F2 LINE L1 -12 6570 2184 7 1736 3590 37 39 21 chr1 150988830 150989297 -46206135 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1736 33900 80 3 6 chr1 150989297 150991076 -46204356 - L1Md_F2 LINE L1 -3700 2183 410 7 1736 1161 184 28 205 chr1 150991078 150991624 -46203808 + Lx7 LINE L1 7247 7695 -1 7 1736 878 220 27 9 chr1 150991785 150992005 -46203427 - URR1A DNA MER1_type 0 226 3 7 1736 203 195 84 12 chr1 150992232 150992315 -46203117 + (TTAAA)n Simple_repeat Simple_repeat 4 92 0 7 1736 207 70 0 65 chr1 150992276 150992322 -46203110 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 7 1736 306 202 31 46 chr1 150992387 150992517 -46202915 + T-rich Low_complexity Low_complexity 5 132 0 7 1736 37 62 0 0 chr1 150992572 150992637 -46202795 + AT_rich Low_complexity Low_complexity 1 65 0 7 1736 2419 150 0 0 chr1 150992642 150993055 -46202377 + L1_Mur2 LINE L1 3686 4098 -1779 7 1736 2454 94 0 0 chr1 150993055 150993397 -46202035 + L1_Mus3 LINE L1 5799 6140 -498 7 1736 357 85 0 0 chr1 150993397 150993456 -46201976 + L1_Mus3 LINE L1 6577 6635 -3 7 1736 276 244 132 53 chr1 150994276 150994466 -46200966 - Lx7 LINE L1 -1800 5896 5692 7 1736 258 240 52 26 chr1 150994554 150994631 -46200801 + 4.5SRNA scRNA scRNA 16 94 0 7 3 22 70 0 0 chr1 150994910 150994953 -46200479 + AT_rich Low_complexity Low_complexity 1 43 0 7 1737 21 0 0 0 chr1 150995024 150995045 -46200387 + AT_rich Low_complexity Low_complexity 1 21 0 7 1737 233 250 15 0 chr1 150997205 150997273 -46198159 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1737 22 35 0 0 chr1 150997517 150997546 -46197886 + AT_rich Low_complexity Low_complexity 1 29 0 7 1737 330 26 0 0 chr1 150997877 150997916 -46197516 + (TGG)n Simple_repeat Simple_repeat 3 41 0 7 1737 482 349 35 35 chr1 150997922 150998124 -46197308 - ID_B1 SINE B4 -14 210 9 7 1737 5101 82 4 1 chr1 150999076 151000000 -46195432 + L1_Mus1 LINE L1 5146 6073 -494 7 1737 3727 78 4 2 chr1 151000000 151000490 -46194942 + L1_Mus1 LINE L1 6074 6564 -3 1 1737 245 300 100 0 chr1 151001200 151001280 -46194152 + B1F1 SINE Alu 6 93 -56 2 1737 3395 85 4 29 chr1 151002273 151002758 -46192674 + L1_Mus1 LINE L1 6095 6567 0 3 1737 5700 172 42 29 chr1 151002785 151003943 -46191489 - Lx2B LINE L1 -4 5873 4701 4 1737 4213 240 48 15 chr1 151003941 151004936 -46190496 + Lx2B LINE L1 5888 6910 -90 4 1737 2784 66 55 0 chr1 151004936 151005315 -46190117 + MTB LTR MaLR 1 400 0 5 1737 4213 240 48 15 chr1 151005315 151005395 -46190037 + Lx2B LINE L1 6911 6999 -1 4 1737 231 342 100 26 chr1 151005509 151005786 -46189646 + L2a LINE L2 2992 3276 -99 6 1737 180 0 0 0 chr1 151005915 151005935 -46189497 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1737 417 20 0 0 chr1 151006924 151006974 -46188458 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1737 206 311 11 22 chr1 151006981 151007073 -46188359 + (CATA)n Simple_repeat Simple_repeat 1 91 0 9 1737 366 353 35 5 chr1 151007210 151007412 -46188020 - B3 SINE B2 -8 208 1 1 1737 243 212 0 43 chr1 151008120 151008189 -46187243 + T-rich Low_complexity Low_complexity 6 71 0 1 1737 610 359 70 9 chr1 151008243 151008471 -46186961 - B4A SINE B4 -23 269 28 1 1737 21 36 0 0 chr1 151009523 151009551 -46185881 + AT_rich Low_complexity Low_complexity 1 28 0 1 1737 1615 154 3 35 chr1 151011073 151011362 -46184070 + Lx LINE L1 6365 6644 -10 1 1737 23 0 0 0 chr1 151011710 151011733 -46183699 + AT_rich Low_complexity Low_complexity 1 23 0 1 1737 700 188 249 0 chr1 151012730 151012943 -46182489 - Lx9 LINE L1 -22 7622 7357 1 1737 561 15 0 0 chr1 151012960 151013026 -46182406 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1737 268 244 11 53 chr1 151013026 151013121 -46182311 - Lx4B LINE L1 -14 7044 6954 1 1737 4656 202 43 40 chr1 151013124 151014155 -46181277 + Lx5 LINE L1 5889 6922 -128 1 1737 1134 246 71 9 chr1 151014151 151014475 -46180957 - Lx9 LINE L1 -299 7345 7002 1 1737 390 288 56 52 chr1 151015693 151015774 -46179658 + L1M3 LINE L1 5053 5136 -1004 2 1737 3621 159 37 21 chr1 151015774 151016455 -46178977 + RLTR17 LTR ERVK 1 692 0 2 1737 390 288 56 52 chr1 151016455 151016604 -46178828 + L1M3 LINE L1 5137 5284 -856 2 1737 665 216 67 0 chr1 151017011 151017145 -46178287 + B1_Mur4 SINE Alu 7 149 -1 2 1737 1239 273 23 95 chr1 151017212 151017645 -46177787 - MTD LTR MaLR -17 402 1 2 1737 402 313 15 35 chr1 151018611 151018813 -46176619 - B3A SINE B2 0 198 1 2 1737 412 303 72 58 chr1 151018860 151019151 -46176281 - L1MC LINE L1 -768 5378 5084 2 1737 257 311 55 37 chr1 151019326 151019543 -46175889 - L1MC LINE L1 -1264 4882 4662 2 1737 34 89 0 0 chr1 151019666 151019756 -46175676 + AT_rich Low_complexity Low_complexity 1 90 0 2 1737 229 208 19 0 chr1 151020024 151020077 -46175355 + (CAGG)n Simple_repeat Simple_repeat 3 56 0 2 1737 189 121 0 0 chr1 151021736 151021769 -46173663 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2 1737 4542 200 48 10 chr1 151021880 151022801 -46172631 - Lx4B LINE L1 -4 7054 6099 2 1737 258 208 0 0 chr1 151022799 151022847 -46172585 + L1_Mur2 LINE L1 2745 2792 -3085 3 1737 962 196 6 0 chr1 151022857 151023036 -46172396 + RMER19A LTR ERVK 42 221 -516 3 1737 1014 208 33 5 chr1 151023021 151023234 -46172198 + RMER19A LTR ERVK 519 737 0 3 1737 1311 164 68 4 chr1 151023234 151023485 -46171947 + L1_Mur2 LINE L1 5402 5668 -209 3 1737 1621 161 309 4 chr1 151023489 151023695 -46171737 - L1_Mur2 LINE L1 -3614 2263 1932 3 1737 324 0 0 0 chr1 151023695 151023731 -46171701 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1737 1621 161 309 4 chr1 151023731 151023980 -46171452 - L1_Mur2 LINE L1 -3946 1931 1670 3 1737 2965 12 0 6 chr1 151023981 151024320 -46171112 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1737 2761 34 7 160 chr1 151024337 151024793 -46170639 - RLTR10 LTR ERVK -4 386 1 3 1737 16217 31 8 33 chr1 151024795 151026828 -46168604 - RLTR10-int LTR ERVK -3 1984 3 3 1737 2786 36 7 159 chr1 151026830 151027290 -46168142 - RLTR10 LTR ERVK 0 390 1 3 1737 7850 47 29 2 chr1 151027325 151028438 -46166994 - L1Md_F2 LINE L1 -1 6581 5448 3 1737 1464 219 89 44 chr1 151028430 151029204 -46166228 - L1_Mur2 LINE L1 -4226 1654 811 3 1737 622 272 111 8 chr1 151029485 151029702 -46165730 + Lx6 LINE L1 6479 6900 -560 3 1737 447 305 61 0 chr1 151029844 151029975 -46165457 + RSINE1 SINE B4 12 150 -15 3 1737 1267 184 24 4 chr1 151030152 151030398 -46165034 + Lx2B LINE L1 6749 6999 -1 4 1737 25 0 0 0 chr1 151030523 151030548 -46164884 + AT_rich Low_complexity Low_complexity 1 25 0 4 1737 8980 7 0 0 chr1 151030720 151031802 -46163630 - L1Md_T LINE L1 0 6582 5501 4 1737 2915 65 3 0 chr1 151031800 151032185 -46163247 + L1_Mm LINE L1 2575 2960 -2923 4 1737 256 350 75 8 chr1 151032440 151032708 -46162724 - L1MA6 LINE L1 0 6300 6015 4 1737 367 268 18 9 chr1 151033459 151033572 -46161860 + PB1D9 SINE Alu 7 120 0 4 1737 22 0 0 0 chr1 151033684 151033706 -46161726 + AT_rich Low_complexity Low_complexity 1 22 0 4 1737 21 0 0 0 chr1 151033820 151033841 -46161591 + AT_rich Low_complexity Low_complexity 1 21 0 4 1737 4976 262 75 26 chr1 151034706 151034825 -46160607 - Lx6 LINE L1 -11 7449 7327 4 1737 338 0 24 0 chr1 151034825 151034867 -46160565 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 4 1737 4976 262 75 26 chr1 151034867 151036150 -46159282 - Lx6 LINE L1 -134 7326 5980 4 1737 2936 92 2 10 chr1 151036154 151036569 -46158863 - BGLII LTR ERVK 0 421 10 5 1737 6072 201 84 8 chr1 151036569 151038098 -46157334 - Lx6 LINE L1 -1534 5926 4282 4 1737 4637 196 29 123 chr1 151038104 151039086 -46156346 + RMER12 LTR ERVK 1 895 -427 5 1737 417 109 0 0 chr1 151039086 151039150 -46156282 + (TATG)n Simple_repeat Simple_repeat 3 66 0 5 1737 4637 208 33 101 chr1 151039150 151039671 -46155761 + RMER12 LTR ERVK 896 1322 0 5 1737 816 180 245 0 chr1 151039680 151039941 -46155491 - Lx6 LINE L1 -1604 4276 3952 4 1737 625 214 40 83 chr1 151039938 151040128 -46155304 - Lx6 LINE L1 -5751 1335 1146 4 1737 435 38 0 0 chr1 151040128 151040181 -46155251 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1737 351 0 0 0 chr1 151040181 151040219 -46155213 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1737 625 214 40 83 chr1 151040219 151040328 -46155104 - Lx6 LINE L1 -5941 1145 1049 4 1737 288 0 0 0 chr1 151040328 151040360 -46155072 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1737 594 148 0 0 chr1 151040360 151040461 -46154971 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 1737 3406 158 38 0 chr1 151040462 151040485 -46154947 - Lx3B LINE L1 -76 6897 6875 5 1737 633 27 0 0 chr1 151040485 151040560 -46154872 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1737 3406 158 38 0 chr1 151040560 151041088 -46154344 - Lx3B LINE L1 -99 6874 6327 5 1737 5504 53 6 6 chr1 151041377 151042073 -46153359 + L1Md_F2 LINE L1 5886 6581 -1 5 1737 265 294 74 69 chr1 151042245 151042420 -46153012 - MER63A DNA AcHobo 0 210 35 6 1737 186 47 22 65 chr1 151042540 151042586 -46152846 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1737 689 304 37 48 chr1 151044784 151045078 -46150354 + Lx8 LINE L1 6959 7249 -224 6 1737 708 35 0 0 chr1 151045152 151045239 -46150193 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1737 321 26 0 0 chr1 151045248 151045286 -46150146 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1737 200 314 0 0 chr1 151045672 151045723 -46149709 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 6 1737 217 100 0 39 chr1 151046821 151046873 -46148559 + (TAAAAA)n Simple_repeat Simple_repeat 4 53 0 6 1737 25 0 0 0 chr1 151047173 151047198 -46148234 + AT_rich Low_complexity Low_complexity 1 25 0 6 1737 24 32 0 0 chr1 151047342 151047373 -46148059 + AT_rich Low_complexity Low_complexity 1 31 0 6 1737 378 0 0 0 chr1 151048042 151048084 -46147348 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 1737 1575 150 54 0 chr1 151048140 151048452 -46146980 + Lx2B LINE L1 6537 6977 -23 7 1737 1809 233 23 41 chr1 151050325 151050808 -46144624 + Lx2B LINE L1 6527 7000 0 7 1737 200 281 53 53 chr1 151050865 151050959 -46144473 + MIR SINE MIR 25 118 -144 7 1737 1527 290 29 27 chr1 151051267 151051710 -46143722 - RMER15 LTR ERVL -57 518 75 7 1737 2666 88 31 8 chr1 151052003 151052394 -46143038 - MTB LTR MaLR 0 400 1 7 1737 207 0 0 0 chr1 151052917 151052940 -46142492 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1737 430 320 27 7 chr1 151053826 151053974 -46141458 - RSINE1 SINE B4 -13 152 2 7 1737 24 0 0 0 chr1 151054003 151054027 -46141405 + AT_rich Low_complexity Low_complexity 1 24 0 7 1737 4174 103 7 2 chr1 151054068 151054659 -46140773 + L1_Mus3 LINE L1 6039 6632 -6 7 1737 277 318 67 56 chr1 151054670 151054850 -46140582 + B3A SINE B2 1 182 -16 7 1737 414 108 0 0 chr1 151055362 151055436 -46139996 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1737 28 48 0 0 chr1 151055489 151055531 -46139901 + AT_rich Low_complexity Low_complexity 1 42 0 8 1737 368 327 65 39 chr1 151055674 151055906 -46139526 - L2 LINE L2 -817 2602 2365 8 1737 39 22 0 0 chr1 151055938 151055984 -46139448 + AT_rich Low_complexity Low_complexity 1 46 0 8 1737 21 0 0 0 chr1 151056039 151056060 -46139372 + AT_rich Low_complexity Low_complexity 1 21 0 8 1737 21 0 0 0 chr1 151056996 151057017 -46138415 + AT_rich Low_complexity Low_complexity 1 21 0 8 1737 508 327 81 45 chr1 151057035 151057343 -46138089 - MLT2B3 LTR ERVL -193 327 9 8 1737 700 42 21 0 chr1 151057400 151057496 -46137936 + (TTTTC)n Simple_repeat Simple_repeat 2 99 0 8 1737 2819 84 18 0 chr1 151057509 151057892 -46137540 - L1Md_F2 LINE L1 -12 6570 6181 8 1737 4503 66 12 0 chr1 151058193 151058765 -46136667 - L1_Mus1 LINE L1 -2 6565 5987 8 1737 353 306 54 0 chr1 151058785 151058896 -46136536 + MLT2B1 LTR ERVL 67 183 -337 9 1737 392 51 17 0 chr1 151058985 151059044 -46136388 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1737 30 27 0 0 chr1 151059846 151059883 -46135549 + AT_rich Low_complexity Low_complexity 1 37 0 9 1737 479 288 8 17 chr1 151059883 151060003 -46135429 + RSINE1 SINE B4 11 129 -36 9 1737 648 319 78 12 chr1 151060389 151060801 -46134631 - L1MB8 LINE L1 -5 6173 5735 9 1737 279 0 0 0 chr1 151061116 151061147 -46134285 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1737 1142 268 123 35 chr1 151061178 151061746 -46133686 - L1MA9 LINE L1 -159 6153 5536 9 1737 23 68 0 0 chr1 151062718 151062762 -46132670 + AT_rich Low_complexity Low_complexity 1 44 0 9 1737 258 333 87 43 chr1 151062844 151062982 -46132450 - B1F SINE Alu 0 149 6 9 1737 1090 54 0 45 chr1 151063418 151063572 -46131860 - B1_Mm SINE Alu 0 147 1 9 1737 911 134 0 6 chr1 151063821 151064001 -46131431 + (CAAAC)n Simple_repeat Simple_repeat 2 180 0 1 1737 189 0 0 0 chr1 151064001 151064021 -46131411 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 1737 2164 320 24 24 chr1 151064053 151064809 -46130623 - Lx7 LINE L1 -511 7185 6430 1 1737 1346 279 101 32 chr1 151064806 151065767 -46129665 + Lx7 LINE L1 5367 6395 -1301 1 1737 1046 296 121 14 chr1 151066009 151066522 -46128910 - Lx9 LINE L1 -5 7639 7072 1 1737 1211 316 118 32 chr1 151067266 151068382 -46127050 + L1_Mur3 LINE L1 3719 4969 -911 1 1737 5985 47 0 0 chr1 151068382 151069105 -46126327 + L1Md_F2 LINE L1 5859 6581 -1 1 1737 1211 316 118 32 chr1 151069105 151069590 -46125842 + L1_Mur3 LINE L1 4970 5457 -423 1 1737 18535 102 41 9 chr1 151069611 151072982 -46122450 + L1_Mur1 LINE L1 676 4059 -1827 1 1737 3983 56 0 4 chr1 151072982 151073486 -46121946 + L1Md_F2 LINE L1 6081 6582 0 1 1737 1993 150 38 3 chr1 151073481 151073821 -46121611 + Lx3_Mus LINE L1 6650 7001 -8 1 1737 22 35 0 0 chr1 151073821 151073850 -46121582 + AT_rich Low_complexity Low_complexity 1 29 0 1 1737 3562 120 35 12 chr1 151073876 151074443 -46120989 - L1_Mus4 LINE L1 -6 6630 6051 1 1737 1242 110 48 5 chr1 151074443 151074647 -46120785 + L1_Mus4 LINE L1 5856 6068 -570 1 1737 354 271 9 9 chr1 151074636 151074744 -46120688 + L1M2 LINE L1 5515 5622 -675 1 1737 298 157 0 0 chr1 151074756 151074807 -46120625 + L1M2 LINE L1 5699 5749 -551 1 1737 744 288 97 108 chr1 151074810 151075085 -46120347 - ORR1D2 LTR MaLR -12 358 79 1 1737 1142 238 69 55 chr1 151075085 151075464 -46119968 - ORR1C2 LTR MaLR 0 384 1 1 1737 744 288 97 108 chr1 151075464 151075550 -46119882 - ORR1D2 LTR MaLR -292 78 1 1 1737 543 335 97 69 chr1 151075553 151076586 -46118846 + Lx8 LINE L1 5718 6779 -694 1 1737 246 327 153 19 chr1 151076834 151077049 -46118383 - Lx8 LINE L1 -24 7449 7206 1 1737 811 344 84 39 chr1 151077110 151077785 -46117647 - Lx7 LINE L1 -610 7086 6381 1 1737 4358 107 53 33 chr1 151078205 151078941 -46116491 - RMER17A LTR ERVK 0 751 1 1 1737 2207 192 56 65 chr1 151079147 151079825 -46115607 - BGLII_B LTR ERVK -4 549 1 1 1737 246 393 68 20 chr1 151080226 151080475 -46114957 + MLT1L LTR MaLR 346 606 -4 1 1737 1021 99 19 0 chr1 151082419 151082581 -46112851 - L1_Mus3 LINE L1 -5 6633 6469 1 1737 948 221 96 87 chr1 151082600 151082956 -46112476 - RMER1C Other Other -3 1339 981 1 1737 485 295 102 41 chr1 151083079 151083323 -46112109 + RLTR11A2 LTR ERVK 3 261 -266 1 1737 437 296 56 87 chr1 151083584 151083836 -46111596 - Lx8 LINE L1 0 7473 7230 1 1737 225 169 0 0 chr1 151083939 151083998 -46111434 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1737 198 0 0 0 chr1 151084661 151084683 -46110749 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1737 263 203 14 0 chr1 151085393 151085462 -46109970 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1737 210 363 77 38 chr1 151085863 151086072 -46109360 + L2c LINE L2 3122 3338 -49 1 1737 352 260 150 0 chr1 151086665 151086792 -46108640 + Lx7 LINE L1 6837 6993 -703 1 1737 2255 153 13 0 chr1 151086789 151087174 -46108258 - L1_Mus4 LINE L1 -875 5008 4619 1 1737 7439 119 11 4 chr1 151087179 151088763 -46106669 + L1_Mus4 LINE L1 5040 6635 -1 1 1737 267 292 28 49 chr1 151088771 151088799 -46106633 + Lx7 LINE L1 6978 7002 -694 1 1737 2059 138 6 0 chr1 151088799 151089124 -46106308 - ORR1A2 LTR MaLR 0 327 1 1 1737 1874 272 14 9 chr1 151089124 151089566 -46105866 + Lx6 LINE L1 6990 7433 -27 1 1737 249 33 0 0 chr1 151089600 151089630 -46105802 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 1 1737 1121 246 93 40 chr1 151089712 151090341 -46105091 + L1_Mur3 LINE L1 1093 1760 -4120 1 1737 373 143 12 12 chr1 151090400 151090485 -46104947 - Lx9 LINE L1 -32 7612 7528 1 1737 1911 280 35 7 chr1 151090557 151091133 -46104299 - Lx9 LINE L1 -445 7199 6608 1 1737 1515 260 42 33 chr1 151091143 151091691 -46103741 + L1_Mur3 LINE L1 1761 2313 -3567 1 1737 555 338 0 19 chr1 151091985 151092145 -46103287 + B4A SINE B4 112 268 -24 1 1737 450 79 0 0 chr1 151092150 151092213 -46103219 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1737 615 39 0 0 chr1 151092350 151092428 -46103004 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1737 193 325 79 24 chr1 151092439 151092565 -46102867 - MIR SINE MIR -64 198 66 1 1737 819 303 117 3 chr1 151093334 151093632 -46101800 - ORR1D2 LTR MaLR -36 334 3 1 1737 525 294 199 36 chr1 151096041 151096337 -46099095 - MTE2a LTR MaLR -31 348 1 1 1737 1159 242 157 90 chr1 151096656 151097089 -46098343 + Lx9 LINE L1 7041 7478 -166 1 1737 519 17 0 0 chr1 151097089 151097149 -46098283 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1737 204 40 0 0 chr1 151097149 151097173 -46098259 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1737 1159 242 157 90 chr1 151097173 151097291 -46098141 + Lx9 LINE L1 7479 7629 -15 1 1737 27 23 0 22 chr1 151097304 151097325 -46098107 + AT_rich Low_complexity Low_complexity 1 21 0 1 1737 1040 88 0 52 chr1 151097325 151097480 -46097952 - B1_Mus1 SINE Alu 0 148 2 1 1737 27 23 0 22 chr1 151097480 151097503 -46097929 + AT_rich Low_complexity Low_complexity 1 23 0 1 1737 5265 65 0 10 chr1 151097508 151098197 -46097235 + L1Md_F2 LINE L1 5888 6569 -13 1 1737 366 268 72 30 chr1 151098227 151098407 -46097025 + B3A SINE B2 1 192 -1 1 1737 341 69 0 0 chr1 151098880 151098938 -46096494 + L1_Mus4 LINE L1 6574 6631 -5 1 1737 312 91 0 0 chr1 151099050 151099094 -46096338 + (TCC)n Simple_repeat Simple_repeat 3 46 0 1 1737 388 309 9 0 chr1 151102231 151102341 -46093091 - ID_B1 SINE B4 -9 215 105 1 1737 1053 291 110 8 chr1 151102354 151102718 -46092714 + MTD LTR MaLR 5 405 -14 1 1737 387 0 0 0 chr1 151102797 151102840 -46092592 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1737 468 0 0 0 chr1 151104327 151104379 -46091053 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1737 22 56 0 0 chr1 151104527 151104563 -46090869 + AT_rich Low_complexity Low_complexity 1 36 0 1 1737 485 311 0 36 chr1 151105073 151105210 -46090222 - B1F SINE Alu -1 148 17 1 1737 21 0 0 0 chr1 151106811 151106832 -46088600 + AT_rich Low_complexity Low_complexity 1 21 0 1 1737 2672 79 60 13 chr1 151107048 151107445 -46087987 - BGLII LTR ERVK -4 417 2 1 1737 342 0 0 0 chr1 151107445 151107483 -46087949 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1737 10996 102 25 13 chr1 151107810 151110172 -46085260 + L1Md_F2 LINE L1 394 2786 -3097 1 1737 10097 70 1 0 chr1 151110157 151111474 -46083958 + L1Md_F2 LINE L1 4267 5585 -298 1 1737 7191 85 7 20 chr1 151111475 151112484 -46082948 + L1Md_F2 LINE L1 5587 6582 0 1 1737 22 88 0 0 chr1 151113212 151113269 -46082163 + AT_rich Low_complexity Low_complexity 1 57 0 1 1737 470 321 1 82 chr1 151114474 151114648 -46080784 + RSINE1 SINE B4 1 161 -4 1 1737 25 0 0 0 chr1 151114661 151114686 -46080746 + AT_rich Low_complexity Low_complexity 1 25 0 1 1737 477 0 0 0 chr1 151114772 151114825 -46080607 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1737 568 284 56 93 chr1 151114950 151115308 -46080124 - ORR1E LTR MaLR 0 379 9 1 1737 916 183 102 58 chr1 151115344 151115446 -46079986 - Lx3B LINE L1 -7 6966 6878 1 1737 222 37 0 0 chr1 151115446 151115473 -46079959 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 1 1737 916 183 102 58 chr1 151115473 151115596 -46079836 - Lx3B LINE L1 -96 6877 6733 1 1737 222 296 0 0 chr1 151116132 151116203 -46079229 + A-rich Low_complexity Low_complexity 1 71 0 1 1737 225 128 0 0 chr1 151116205 151116252 -46079180 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1737 25 0 0 0 chr1 151117850 151117875 -46077557 + AT_rich Low_complexity Low_complexity 1 25 0 1 1737 369 321 115 36 chr1 151118787 151119039 -46076393 + LTR83 LTR ERVL 499 770 -10 1 1737 255 31 0 0 chr1 151120392 151120424 -46075008 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1737 477 224 52 13 chr1 151120474 151120628 -46074804 - HAL1-2a_MD LINE L1 -505 2519 2360 1 1737 22 0 0 0 chr1 151122483 151122505 -46072927 + AT_rich Low_complexity Low_complexity 1 22 0 1 1737 444 62 0 0 chr1 151123319 151123383 -46072049 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1737 245 167 0 0 chr1 151123383 151123425 -46072007 + MT2A LTR ERVL 421 462 -71 1 1737 629 85 0 9 chr1 151123425 151123532 -46071900 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 1 1737 567 43 0 0 chr1 151123620 151123690 -46071742 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1737 666 278 167 148 chr1 151123707 151124133 -46071299 - MT2A LTR ERVL -99 434 1 1 1737 980 42 28 0 chr1 151125417 151125559 -46069873 - L1Md_F3 LINE L1 0 6584 6439 1 1737 30 0 0 0 chr1 151125590 151125620 -46069812 + AT_rich Low_complexity Low_complexity 1 30 0 1 1737 746 50 0 38 chr1 151125620 151125725 -46069707 - B1_Mm SINE Alu 0 147 47 1 1737 21 0 0 0 chr1 151125960 151125981 -46069451 + AT_rich Low_complexity Low_complexity 1 21 0 1 1738 6885 130 13 32 chr1 151126051 151127237 -46068195 + Lx3A LINE L1 5819 6981 0 1 1738 231 188 0 0 chr1 151127237 151127285 -46068147 + A-rich Low_complexity Low_complexity 1 48 0 1 1738 21 36 0 0 chr1 151127541 151127569 -46067863 + AT_rich Low_complexity Low_complexity 1 28 0 1 1738 247 102 0 63 chr1 151129159 151129222 -46066210 + A-rich Low_complexity Low_complexity 2 60 0 1 1738 6632 4 0 0 chr1 151129373 151130108 -46065324 + L1Md_A LINE L1 5848 6582 0 1 1738 22 0 0 0 chr1 151130283 151130305 -46065127 + AT_rich Low_complexity Low_complexity 1 22 0 1 1738 2057 234 68 19 chr1 151130390 151130492 -46064940 - RLTR20B2 LTR ERVK -7 553 456 1 1738 606 28 0 0 chr1 151130492 151130564 -46064868 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1738 2057 234 68 19 chr1 151130564 151130988 -46064444 - RLTR20B2 LTR ERVK -105 455 1 1 1738 651 168 0 40 chr1 151131050 151131174 -46064258 - RMER6C LTR ERVK 0 690 572 1 1738 642 134 0 156 chr1 151131174 151131315 -46064117 - RLTR22_Mus LTR ERVK 0 1808 1690 1 1738 8124 52 2 0 chr1 151131315 151132870 -46062562 - L1Md_F2 LINE L1 -2 6580 5024 1 1738 5644 64 12 16 chr1 151132873 151133257 -46062175 - RLTR22_Mus LTR ERVK -122 1686 1303 1 1738 465 19 0 0 chr1 151133257 151133311 -46062121 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1738 306 50 0 0 chr1 151133311 151133350 -46062082 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1738 5644 64 12 16 chr1 151133350 151133739 -46061693 - RLTR22_Mus LTR ERVK -506 1302 916 1 1738 7947 48 1 4 chr1 151133739 151135127 -46060305 - L1Md_F2 LINE L1 0 6582 5202 1 1738 4103 62 0 6 chr1 151135126 151135650 -46059782 + L1Md_F2 LINE L1 4682 5202 -681 1 1738 6686 75 4 21 chr1 151135650 151136307 -46059125 - RLTR22_Mus LTR ERVK -879 929 287 1 1738 1527 37 16 0 chr1 151136307 151136494 -46058938 + B2_Mm1t SINE B2 1 190 -3 1 1738 6686 75 4 21 chr1 151136494 151136781 -46058651 - RLTR22_Mus LTR ERVK -1522 286 1 1 1738 2589 171 68 13 chr1 151136783 151137328 -46058104 - RMER6C LTR ERVK -115 575 1 1 1738 3203 332 72 52 chr1 151137827 151137981 -46057451 - MTE-int LTR MaLR -68 1512 1391 2 1738 633 311 30 5 chr1 151137981 151138178 -46057254 - B3 SINE B2 -11 205 4 2 1738 1478 101 43 13 chr1 151138184 151138415 -46057017 + L1_Mus1 LINE L1 6330 6567 0 2 1738 3203 332 72 52 chr1 151138415 151139664 -46055768 - MTE-int LTR MaLR -195 1385 73 2 1738 528 329 97 14 chr1 151139702 151139918 -46055514 - MTEa LTR MaLR -144 235 2 2 1738 232 342 109 26 chr1 151140412 151140568 -46054864 - MLT1K LTR MaLR -27 568 400 2 1738 369 0 0 0 chr1 151141527 151141568 -46053864 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1738 603 94 0 0 chr1 151141568 151141663 -46053769 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1738 365 329 75 27 chr1 151143023 151143155 -46052277 + RSINE1 SINE B4 4 144 -21 2 1738 369 0 0 0 chr1 151143155 151143196 -46052236 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1738 365 329 75 27 chr1 151143196 151143210 -46052222 + RSINE1 SINE B4 145 157 -8 2 1738 219 69 0 0 chr1 151143432 151143461 -46051971 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1738 38549 6 0 1 chr1 151143582 151149353 -46046079 + L1Md_A LINE L1 1 5586 -297 2 1738 9046 1 0 0 chr1 151149353 151150349 -46045083 + L1Md_A LINE L1 5587 6582 0 2 1738 586 280 87 31 chr1 151150465 151150822 -46044610 + L1M5 LINE L1 3385 3761 -2385 2 1738 1141 75 0 0 chr1 151150825 151150972 -46044460 + B1_Mus2 SINE Alu 1 147 0 2 1738 651 103 0 0 chr1 151150972 151151069 -46044363 + (A)n Simple_repeat Simple_repeat 1 97 0 2 1738 2111 127 29 3 chr1 151151188 151151536 -46043896 + Lx LINE L1 6292 6648 -6 2 1738 298 254 14 0 chr1 151151607 151151678 -46043754 + PB1D10 SINE Alu 41 112 -5 2 1738 564 324 36 63 chr1 151151834 151151926 -46043506 - Lx8 LINE L1 -794 6679 6582 2 1738 3181 29 45 3 chr1 151151926 151152306 -46043126 - MTA_Mm LTR MaLR 0 396 1 2 1738 564 324 36 63 chr1 151152306 151152546 -46042886 - Lx8 LINE L1 -892 6581 6356 2 1738 694 319 110 60 chr1 151152543 151152931 -46042501 + Lx8 LINE L1 6905 7285 -188 2 1738 363 23 0 0 chr1 151152931 151152975 -46042457 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1738 694 319 110 60 chr1 151152975 151153122 -46042310 + Lx8 LINE L1 7286 7466 -7 2 1738 1724 67 4 0 chr1 151153473 151153698 -46041734 - L1_Mus2 LINE L1 0 6566 6341 2 1738 384 372 18 28 chr1 151154898 151155180 -46040252 - Lx9 LINE L1 -273 7371 7093 2 1738 497 328 12 54 chr1 151155265 151155523 -46039909 + Lx7 LINE L1 7057 7303 -393 2 1738 537 94 0 0 chr1 151155530 151155615 -46039817 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1738 24 32 0 0 chr1 151155615 151155646 -46039786 + AT_rich Low_complexity Low_complexity 1 31 0 2 1738 226 204 0 0 chr1 151155660 151155704 -46039728 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 2 1738 22 0 0 0 chr1 151155759 151155781 -46039651 + AT_rich Low_complexity Low_complexity 1 22 0 2 1738 243 236 81 27 chr1 151155809 151155883 -46039549 + RLTR40 LTR ERVK 658 735 -82 2 1738 8397 124 1 3 chr1 151155909 151156415 -46039017 + Lx3B LINE L1 5407 5908 -1065 2 1738 288 0 0 0 chr1 151156415 151156447 -46038985 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1738 8397 137 21 13 chr1 151156447 151157497 -46037935 + Lx3B LINE L1 5909 6969 -4 2 1738 21 0 0 0 chr1 151157511 151157532 -46037900 + AT_rich Low_complexity Low_complexity 1 21 0 2 1738 496 299 13 13 chr1 151158884 151159033 -46036399 + B3A SINE B2 4 152 -46 2 1738 348 24 0 0 chr1 151159035 151159076 -46036356 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1738 1093 82 7 0 chr1 151160185 151160332 -46035100 + B1_Mus1 SINE Alu 1 148 0 2 1738 187 31 62 0 chr1 151160343 151160375 -46035057 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1738 24 53 0 0 chr1 151160467 151160505 -46034927 + AT_rich Low_complexity Low_complexity 1 38 0 2 1738 846 97 0 0 chr1 151160873 151160986 -46034446 - L1_Mus2 LINE L1 -407 6159 6047 2 1738 3055 83 0 47 chr1 151160986 151161431 -46034001 + L1_Mus2 LINE L1 6143 6566 0 2 1738 207 200 0 0 chr1 151161442 151161477 -46033955 + polypurine Low_complexity Low_complexity 2 36 0 2 1738 1229 89 0 11 chr1 151161477 151161659 -46033773 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1738 2932 81 8 0 chr1 151161843 151162240 -46033192 - MTB LTR MaLR 0 400 1 2 1738 3610 61 19 4 chr1 151163048 151163523 -46031909 - L1Md_F3 LINE L1 -15 6569 6088 2 1738 2042 109 21 33 chr1 151163844 151164177 -46031255 + L1Md_F2 LINE L1 6253 6581 -1 2 1738 2764 83 24 0 chr1 151164211 151164585 -46030847 + L1_Mus1 LINE L1 6185 6567 0 2 1738 393 407 53 0 chr1 151165228 151165378 -46030054 + RSINE1 SINE B4 5 162 -3 2 1738 450 0 0 0 chr1 151165386 151165436 -46029996 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1738 258 32 0 0 chr1 151165436 151165466 -46029966 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1738 434 297 0 29 chr1 151165926 151166030 -46029402 - ID_B1 SINE B4 -25 199 99 2 1738 236 132 0 0 chr1 151166050 151166088 -46029344 - ID SINE ID -178 46 9 2 1738 181 265 0 98 chr1 151166393 151166485 -46028947 + L3 LINE CR1 1939 2021 -2468 2 1738 2194 190 26 2 chr1 151167376 151167793 -46027639 - L1_Mur2 LINE L1 -690 5187 4761 2 1738 1218 286 62 16 chr1 151167797 151168181 -46027251 + Lx5 LINE L1 6647 7048 -2 2 1738 34 0 0 0 chr1 151168214 151168248 -46027184 + AT_rich Low_complexity Low_complexity 1 34 0 2 1738 208 274 13 40 chr1 151168938 151169014 -46026418 + GA-rich Low_complexity Low_complexity 5 78 0 2 1738 311 210 36 24 chr1 151169895 151169978 -46025454 + L2a LINE L2 2506 2589 -830 2 1738 301 387 11 11 chr1 151170057 151170151 -46025281 + RSINE1 SINE B4 46 139 -26 2 1738 333 0 0 0 chr1 151170167 151170204 -46025228 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1738 567 29 0 0 chr1 151170204 151170272 -46025160 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1738 449 302 194 5 chr1 151170377 151170593 -46024839 + MER67D LTR ERV1 249 505 -9 2 1738 389 70 0 17 chr1 151171147 151171205 -46024227 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1738 537 374 51 12 chr1 151171213 151171470 -46023962 - B4A SINE B4 -12 280 14 2 1738 249 275 61 97 chr1 151172041 151172206 -46023226 + RLTR41 LTR ERV1 253 411 -35 2 1738 249 359 64 35 chr1 151172332 151172534 -46022898 + L2a LINE L2 3018 3225 -201 2 1738 207 69 0 0 chr1 151174572 151174601 -46020831 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1738 228 184 9 93 chr1 151174737 151174845 -46020587 + A-rich Low_complexity Low_complexity 5 103 0 2 1738 279 356 33 70 chr1 151174929 151175228 -46020204 + B4A SINE B4 5 292 0 2 1738 369 0 0 0 chr1 151175269 151175310 -46020122 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1738 216 0 0 0 chr1 151176244 151176268 -46019164 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1738 446 336 115 12 chr1 151177086 151177339 -46018093 + RMER15 LTR ERVL 293 571 -4 2 1738 288 241 129 0 chr1 151178660 151178776 -46016656 - L1MA9 LINE L1 -1 6311 6181 2 1738 263 325 101 44 chr1 151179463 151179711 -46015721 + L3 LINE CR1 2157 2418 -2071 2 1738 575 350 80 94 chr1 151179740 151180828 -46014604 + HAL1 LINE L1 45 1117 -1390 2 1738 498 114 0 0 chr1 151180994 151181073 -46014359 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1738 21 0 0 0 chr1 151181283 151181304 -46014128 + AT_rich Low_complexity Low_complexity 1 21 0 2 1738 648 223 0 0 chr1 151182650 151182825 -46012607 + GA-rich Low_complexity Low_complexity 2 176 0 2 1738 355 329 85 50 chr1 151182979 151183238 -46012194 + HAL1 LINE L1 2145 2412 -95 2 1738 355 402 26 0 chr1 151183267 151183461 -46011971 + MER63A DNA AcHobo 5 203 -7 2 1738 239 261 84 34 chr1 151183580 151183699 -46011733 + L3 LINE CR1 2405 2529 -1960 2 1738 1691 138 74 12 chr1 151183903 151184226 -46011206 + L1_Mur2 LINE L1 4923 5265 -612 2 1738 624 317 14 43 chr1 151184233 151184441 -46010991 - MTD LTR MaLR -217 202 1 2 1738 748 208 0 0 chr1 151184462 151184611 -46010821 - Lx6 LINE L1 -1 7459 7311 2 1738 24 0 0 0 chr1 151185190 151185214 -46010218 + AT_rich Low_complexity Low_complexity 1 24 0 2 1738 532 298 99 45 chr1 151187368 151187657 -46007775 + MLT1D LTR MaLR 201 501 -4 2 1738 470 297 15 15 chr1 151187905 151188035 -46007397 - RSINE1 SINE B4 -24 141 12 2 1738 564 313 22 16 chr1 151188168 151188353 -46007079 + B3 SINE B2 1 186 -30 2 1738 267 31 0 0 chr1 151188689 151188721 -46006711 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1738 207 0 0 0 chr1 151189627 151189650 -46005782 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1738 315 0 0 0 chr1 151189650 151189684 -46005748 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1738 207 188 0 0 chr1 151189685 151189733 -46005699 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1738 1145 121 0 11 chr1 151191639 151191823 -46003609 - RMER17C LTR ERVK 0 410 229 2 1738 352 157 108 43 chr1 151191807 151191825 -46003607 - RMER17C LTR ERVK -311 99 84 2 1738 824 46 9 0 chr1 151191825 151191934 -46003498 + (GA)n Simple_repeat Simple_repeat 2 111 0 2 1738 352 157 108 43 chr1 151191934 151192008 -46003424 - RMER17C LTR ERVK -327 83 1 2 1738 22 56 0 0 chr1 151192486 151192522 -46002910 + AT_rich Low_complexity Low_complexity 1 36 0 2 1738 402 158 0 10 chr1 151192938 151193040 -46002392 + L1_Mus3 LINE L1 6538 6638 0 2 1738 622 268 43 11 chr1 151193541 151193726 -46001706 - LTRIS4 LTR ERV1 -18 489 299 2 1738 294 29 0 0 chr1 151194312 151194347 -46001085 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1738 243 306 0 14 chr1 151194347 151194420 -46001012 - Lx9 LINE L1 -228 7416 7345 2 1738 371 167 0 40 chr1 151194435 151194510 -46000922 + RMER17C LTR ERVK 3 74 -336 2 1738 405 264 98 40 chr1 151194888 151195062 -46000370 + RLTR41 LTR ERV1 263 446 0 2 1738 404 167 0 22 chr1 151195073 151195165 -46000267 + CT-rich Low_complexity Low_complexity 2 91 0 2 1738 334 310 51 89 chr1 151195296 151195611 -45999821 - Lx9 LINE L1 -314 7330 7028 2 1738 257 304 17 51 chr1 151195600 151195683 -45999749 - Lx8 LINE L1 -651 6822 6743 2 1738 2122 187 84 53 chr1 151195683 151196196 -45999236 - RLTR24 LTR ERV1 0 529 1 2 1738 257 304 17 51 chr1 151196196 151196230 -45999202 - Lx8 LINE L1 -731 6742 6709 2 1738 604 304 14 0 chr1 151196876 151197014 -45998418 - B1_Mur2 SINE Alu -9 140 1 2 1738 441 211 11 0 chr1 151199309 151199404 -45996028 - Lx9 LINE L1 -262 7382 7287 2 1738 2344 235 13 57 chr1 151199441 151200040 -45995392 - Lx9 LINE L1 -764 6880 6308 2 1738 580 147 48 14 chr1 151200084 151200229 -45995203 + Lx9 LINE L1 7486 7635 -9 3 1738 373 136 0 0 chr1 151200270 151200336 -45995096 + Lx3A LINE L1 6909 6974 -7 3 1738 513 0 0 0 chr1 151200340 151200397 -45995035 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1738 201 163 0 0 chr1 151200402 151200451 -45994981 + A-rich Low_complexity Low_complexity 1 49 0 3 1738 523 303 71 39 chr1 151200618 151200800 -45994632 - B3A SINE B2 -7 191 4 3 1738 1071 81 0 0 chr1 151201254 151201390 -45994042 + B1_Mus2 SINE Alu 2 137 -10 3 1738 243 0 0 0 chr1 151201390 151201417 -45994015 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1738 270 0 0 0 chr1 151201711 151201741 -45993691 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 1738 1076 96 0 14 chr1 151201846 151201994 -45993438 + B1_Mus2 SINE Alu 2 147 0 3 1738 243 0 0 0 chr1 151201994 151202021 -45993411 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1738 23 68 0 0 chr1 151203122 151203166 -45992266 + AT_rich Low_complexity Low_complexity 1 44 0 3 1738 789 283 98 9 chr1 151204957 151205171 -45990261 - MTE2a LTR MaLR -1 378 146 3 1738 1192 249 69 11 chr1 151205175 151205525 -45989907 - ORR1D1 LTR MaLR 0 374 5 3 1738 333 0 0 0 chr1 151205958 151205995 -45989437 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1738 591 99 0 0 chr1 151205995 151206096 -45989336 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 1738 30 27 0 0 chr1 151206794 151206831 -45988601 + AT_rich Low_complexity Low_complexity 1 37 0 3 1738 1362 132 38 0 chr1 151206918 151207153 -45988279 + L1_Mur2 LINE L1 4823 5066 -811 3 1738 3194 206 165 20 chr1 151207145 151207932 -45987500 + Lx5 LINE L1 6133 7033 -17 3 1738 9344 144 29 8 chr1 151208331 151208707 -45986725 + Lx4B LINE L1 4241 4651 -1226 3 1738 345 24 0 0 chr1 151208707 151208749 -45986683 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1738 9344 168 51 8 chr1 151208749 151211036 -45984396 + Lx4B LINE L1 4652 7036 -22 3 1738 243 0 0 0 chr1 151211036 151211063 -45984369 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1738 3877 125 10 0 chr1 151211104 151211687 -45983745 - L1_Mus4 LINE L1 0 6636 6048 3 1738 24 0 0 0 chr1 151211735 151211759 -45983673 + AT_rich Low_complexity Low_complexity 1 24 0 3 1738 506 308 34 7 chr1 151211788 151211935 -45983497 + RSINE1 SINE B4 2 152 -13 3 1738 366 229 31 0 chr1 151212013 151212109 -45983323 + Lx9 LINE L1 7535 7633 -11 3 1738 970 270 83 41 chr1 151212206 151212733 -45982699 + Lx8 LINE L1 5376 5928 -1545 3 1738 5596 71 9 1 chr1 151213069 151213807 -45981625 + L1Md_F2 LINE L1 5839 6582 0 3 1738 286 351 86 23 chr1 151215651 151215826 -45979606 - L2a LINE L2 -38 3388 3203 3 1738 195 344 190 24 chr1 151215974 151216263 -45979169 - L2a LINE L2 -439 2980 2644 3 1738 558 0 0 0 chr1 151216264 151216326 -45979106 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1738 296 94 19 0 chr1 151217209 151217262 -45978170 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1738 368 225 18 0 chr1 151217327 151217438 -45977994 - Lx9 LINE L1 -1 7643 7531 3 1738 511 73 324 18 chr1 151217438 151217549 -45977883 - B2_Mm2 SINE B2 -4 191 47 3 1738 1174 125 23 0 chr1 151217605 151217781 -45977651 - B2_Mm2 SINE B2 -14 181 2 3 1738 677 200 67 0 chr1 151217842 151217992 -45977440 + Lx9 LINE L1 6842 7001 -643 3 1738 25 0 0 0 chr1 151218792 151218817 -45976615 + AT_rich Low_complexity Low_complexity 1 25 0 3 1738 543 281 0 15 chr1 151219176 151219313 -45976119 + RSINE1 SINE B4 31 165 0 3 1738 1321 222 22 29 chr1 151220150 151220222 -45975210 - Lx9 LINE L1 -267 7377 7304 3 1738 2691 39 42 0 chr1 151220222 151220552 -45974880 - ORR1A0 LTR MaLR -2 344 1 3 1738 1321 222 22 29 chr1 151220552 151220790 -45974642 - Lx9 LINE L1 -341 7303 7070 3 1738 405 0 0 0 chr1 151220848 151220893 -45974539 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1738 369 0 0 0 chr1 151220893 151220933 -45974499 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1738 231 36 0 0 chr1 151220933 151220960 -45974472 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 1738 276 167 40 40 chr1 151221095 151221170 -45974262 + T-rich Low_complexity Low_complexity 4 78 0 3 1738 1436 275 34 58 chr1 151221858 151222275 -45973157 - MTD LTR MaLR -12 407 1 3 1738 372 328 194 64 chr1 151223105 151223450 -45971982 + MLT1A1 LTR MaLR 19 408 0 3 1738 956 206 81 5 chr1 151224784 151224994 -45970438 + URR1A DNA MER1_type 1 226 0 3 1738 23 33 0 0 chr1 151225210 151225240 -45970192 + AT_rich Low_complexity Low_complexity 1 30 0 3 1738 32 0 0 0 chr1 151227549 151227581 -45967851 + AT_rich Low_complexity Low_complexity 1 32 0 3 1738 414 121 0 0 chr1 151227702 151227768 -45967664 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 3 1738 791 88 159 7 chr1 151227962 151228100 -45967332 + L1Md_F2 LINE L1 6422 6580 -2 3 1738 2044 251 123 28 chr1 151228155 151228389 -45967043 - Lx7 LINE L1 -2 7694 7396 3 1738 1101 117 0 0 chr1 151228389 151228534 -45966898 + B1_Mus2 SINE Alu 1 145 -2 3 1738 2044 251 123 28 chr1 151228534 151229021 -45966411 - Lx7 LINE L1 -301 7395 6904 3 1738 585 124 0 0 chr1 151229298 151229395 -45966037 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 1738 365 327 60 100 chr1 151229405 151229704 -45965728 - B4 SINE B4 0 292 6 3 1738 561 298 54 25 chr1 151229925 151230242 -45965190 - L1MD3 LINE L1 -2045 5950 5625 3 1738 1225 265 86 29 chr1 151230257 151230642 -45964790 - MTD LTR MaLR 0 419 13 3 1738 385 306 151 33 chr1 151230755 151231270 -45964162 - L1MD3 LINE L1 -743 5403 4828 3 1738 484 311 42 19 chr1 151231317 151231579 -45963853 - L1MD3 LINE L1 -1399 4747 4480 3 1738 506 302 57 86 chr1 151231697 151231856 -45963576 + B3 SINE B2 1 166 -50 3 1738 360 94 0 0 chr1 151231856 151231909 -45963523 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1738 506 302 57 86 chr1 151231909 151231959 -45963473 + B3 SINE B2 167 204 -12 3 1738 1453 299 34 18 chr1 151232053 151232518 -45962914 + RMER1C Other Other 360 874 -468 3 1738 585 265 156 22 chr1 151232538 151232800 -45962632 - L1MC2 LINE L1 -93 6251 5940 3 1738 207 0 0 0 chr1 151232800 151232823 -45962609 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1738 585 306 151 20 chr1 151232823 151233248 -45962184 - L1MC2 LINE L1 -1846 5939 5478 3 1738 279 68 33 17 chr1 151233278 151233338 -45962094 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 3 1738 468 325 81 36 chr1 151233340 151233894 -45961538 - L1MC2 LINE L1 -864 5480 4894 3 1738 4609 227 73 13 chr1 151233904 151235063 -45960369 + Lx7 LINE L1 63 1291 -6437 3 1738 558 0 0 0 chr1 151235063 151235125 -45960307 + (GAA)n Simple_repeat Simple_repeat 2 63 0 3 1738 4609 223 26 58 chr1 151235125 151235500 -45959932 + Lx7 LINE L1 1292 1648 -4232 3 1738 2108 175 23 0 chr1 151235488 151235883 -45959549 + Lx7 LINE L1 3871 4274 -1606 3 1738 722 329 13 8 chr1 151236260 151236499 -45958933 - RLTR16 LTR ERVK -261 244 5 3 1738 330 213 13 0 chr1 151236503 151236578 -45958854 + Lx7 LINE L1 4269 4344 -1536 3 1738 337 182 0 0 chr1 151236562 151236617 -45958815 + Lx7 LINE L1 5853 5907 -1789 3 1738 264 122 0 0 chr1 151236707 151236748 -45958684 + (CCTTG)n Simple_repeat Simple_repeat 3 43 0 3 1738 312 91 0 0 chr1 151236761 151236805 -45958627 + (CACCT)n Simple_repeat Simple_repeat 4 47 0 3 1738 335 261 110 23 chr1 151236806 151236991 -45958441 + Lx7 LINE L1 7521 7694 -2 3 1738 180 77 0 0 chr1 151237174 151237200 -45958232 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1738 246 81 0 0 chr1 151237317 151237354 -45958078 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1738 36 62 0 0 chr1 151238241 151238305 -45957127 + AT_rich Low_complexity Low_complexity 1 64 0 3 1738 8396 67 3 1 chr1 151238372 151239368 -45956064 - L1_Mus1 LINE L1 0 6567 5570 3 1738 863 87 8 0 chr1 151239368 151239494 -45955938 + (TTTC)n Simple_repeat Simple_repeat 3 129 0 3 1738 8396 120 3 1 chr1 151239494 151240418 -45955014 - L1_Mus1 LINE L1 -314 5569 4643 3 1738 2841 21 0 43 chr1 151240418 151240770 -45954662 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1738 56120 18 17 1 chr1 151240770 151247142 -45948290 + IAPEz-int LTR ERVK 8 6481 0 3 1738 2841 21 0 43 chr1 151247142 151247494 -45947938 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1738 2995 120 11 0 chr1 151247494 151247961 -45947471 - L1_Mus1 LINE L1 -1236 4647 4176 3 1738 9400 123 1 0 chr1 151247942 151249396 -45946036 + L1_Mus1 LINE L1 2694 4148 -1735 3 1738 495 48 0 0 chr1 151251929 151251991 -45943441 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1738 411 228 119 0 chr1 151253093 151253286 -45942146 - Lx9 LINE L1 0 7644 7429 3 1738 1054 323 131 20 chr1 151253557 151254643 -45940789 - L1MC3 LINE L1 -136 7649 6444 3 1738 225 298 34 26 chr1 151254668 151254785 -45940647 - L1MC3 LINE L1 -2046 5739 5622 3 1738 23 33 0 0 chr1 151255299 151255329 -45940103 + AT_rich Low_complexity Low_complexity 1 30 0 3 1738 462 343 17 57 chr1 151255976 151256276 -45939156 + Lx8 LINE L1 7182 7469 -4 3 1738 274 318 0 0 chr1 151256381 151256447 -45938985 + 5S rRNA rRNA 16 81 -40 3 1739 255 333 13 0 chr1 151257554 151257629 -45937803 + MLT1H LTR MaLR 145 220 -329 3 1739 391 365 131 10 chr1 151258237 151258436 -45936996 - ID_B1 SINE B4 0 224 2 3 1739 27 0 0 0 chr1 151259637 151259664 -45935768 + AT_rich Low_complexity Low_complexity 1 27 0 3 1739 801 147 12 6 chr1 151260696 151260867 -45934565 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 1739 520 117 0 42 chr1 151261061 151261160 -45934272 - MTE2a LTR MaLR -1 420 296 3 1739 1835 153 72 0 chr1 151261173 151261520 -45933912 + L1_Mur2 LINE L1 3781 4152 -1725 3 1739 359 250 80 0 chr1 151261522 151261622 -45933810 - MTE2a LTR MaLR -194 185 78 3 1739 1013 81 0 13 chr1 151261989 151262139 -45933293 - L1Md_F2 LINE L1 -2 6580 6433 3 1739 2515 58 0 0 chr1 151262139 151262447 -45932985 + L1Md_F2 LINE L1 5953 6260 -322 3 1739 2966 81 5 2 chr1 151262458 151262853 -45932579 - MTA_Mm LTR MaLR 0 396 1 3 1739 7150 81 20 72 chr1 151262853 151264012 -45931420 - MTA_Mm-int LTR MaLR 0 1098 1 3 1739 3067 59 2 8 chr1 151264012 151264406 -45931026 - MTA_Mm LTR MaLR 0 396 5 3 1739 2663 83 3 0 chr1 151264552 151264913 -45930519 - L1_Mus1 LINE L1 0 6567 6206 3 1739 2088 197 157 18 chr1 151264914 151265217 -45930215 + RMER6C LTR ERVK 1 373 -317 3 1739 990 26 0 0 chr1 151265217 151265334 -45930098 + (GGGAGA)n Simple_repeat Simple_repeat 2 118 0 3 1739 2088 197 157 18 chr1 151265334 151265636 -45929796 + RMER6C LTR ERVK 374 690 0 3 1739 3300 59 0 2 chr1 151265919 151266327 -45929105 + MTB_Mm LTR MaLR 1 407 0 3 1739 5065 156 117 47 chr1 151266331 151267346 -45928086 + MTB_Mm-int LTR MaLR 19 1085 -173 3 1739 1102 92 0 0 chr1 151267346 151267487 -45927945 - B1_Mm SINE Alu -6 141 1 3 1739 5065 156 117 47 chr1 151267487 151267630 -45927802 + MTB_Mm-int LTR MaLR 1086 1258 0 3 1739 2748 99 13 10 chr1 151267630 151268028 -45927404 + MTB_Mm LTR MaLR 1 399 -8 3 1739 1324 297 57 8 chr1 151268795 151269165 -45926267 + MTD LTR MaLR 1 388 -31 3 1739 411 183 0 0 chr1 151269191 151269273 -45926159 + GA-rich Low_complexity Low_complexity 2 83 0 3 1739 465 19 0 0 chr1 151269273 151269327 -45926105 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 3 1739 577 258 68 31 chr1 151269327 151269519 -45925913 + MTB-int LTR MaLR 5 203 -1055 3 1739 2168 238 71 136 chr1 151269529 151270532 -45924900 - RMER1B Other Other -5 1061 1 3 1739 1359 210 123 15 chr1 151270502 151270836 -45924596 - RMER1B Other Other -651 415 46 3 1739 1041 263 63 86 chr1 151271129 151271478 -45923954 + MTB-int LTR MaLR 314 751 -507 3 1739 3367 97 4 19 chr1 151271478 151271960 -45923472 + MT2C_Mm LTR ERVL 1 475 0 3 1739 1041 295 103 73 chr1 151271960 151272435 -45922997 + MTB-int LTR MaLR 752 1257 -1 3 1739 513 282 270 7 chr1 151272440 151272747 -45922685 + MTB LTR MaLR 5 392 -8 3 1739 732 343 57 20 chr1 151273170 151273521 -45921911 - MLT1A0 LTR MaLR 0 365 2 3 1739 1321 210 76 7 chr1 151274349 151274637 -45920795 - MTC LTR MaLR 0 421 114 3 1739 680 304 29 14 chr1 151274876 151275083 -45920349 - B3 SINE B2 -6 210 1 4 1739 216 307 22 11 chr1 151275330 151275419 -45920013 - L2a LINE L2 0 3426 3337 4 1739 754 154 83 33 chr1 151276043 151276224 -45919208 + RMER1C Other Other 1153 1342 0 4 1739 284 213 0 0 chr1 151276879 151276940 -45918492 - Lx LINE L1 -575 6079 6019 4 1739 3147 143 50 21 chr1 151276941 151277504 -45917928 + Lx LINE L1 6076 6654 0 4 1739 745 127 64 40 chr1 151277506 151277679 -45917753 + Lx LINE L1 6478 6654 0 4 1739 560 342 88 33 chr1 151278085 151278726 -45916706 + L2a LINE L2 2766 3425 -1 4 1739 317 275 42 16 chr1 151279874 151280066 -45915366 + L1M2 LINE L1 2236 2432 -3711 4 1739 320 306 172 17 chr1 151280128 151280361 -45915071 + L1M2 LINE L1 4676 4944 -1199 4 1739 386 43 43 14 chr1 151280476 151280546 -45914886 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1739 1990 200 38 36 chr1 151280551 151281013 -45914419 - Lx9 LINE L1 -161 7483 7018 4 1739 5290 136 14 6 chr1 151281013 151281863 -45913569 - Lx2 LINE L1 0 6997 6141 4 1739 1990 200 38 36 chr1 151281863 151281898 -45913534 - Lx9 LINE L1 -627 7017 6985 4 1739 468 188 7 104 chr1 151281909 151282063 -45913369 - Lx7 LINE L1 -4 7692 7554 4 1739 351 113 0 0 chr1 151282067 151282120 -45913312 + (GGAGAA)n Simple_repeat Simple_repeat 5 57 0 4 1739 2699 135 118 10 chr1 151282541 151283051 -45912381 + Lx LINE L1 6084 6648 -6 4 1739 2830 212 25 13 chr1 151283503 151284173 -45911259 + L1VL4 LINE L1 204 881 -5421 4 1739 12428 131 26 7 chr1 151284177 151287156 -45908276 + L1_Mus4 LINE L1 3597 6630 -6 4 1739 180 111 0 0 chr1 151288962 151288989 -45906443 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 4 1739 2198 131 3 6 chr1 151289727 151290066 -45905366 - ORR1A1 LTR MaLR -8 338 1 4 1739 248 257 27 13 chr1 151291226 151291301 -45904131 + CT-rich Low_complexity Low_complexity 1 76 0 4 1739 1080 57 22 28 chr1 151291301 151291481 -45903951 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 1739 253 317 48 9 chr1 151291484 151291589 -45903843 - PB1D10 SINE Alu 0 117 9 4 1739 3721 100 8 2 chr1 151292034 151292563 -45902869 - L1_Mus2 LINE L1 0 6566 6035 4 1739 3782 75 24 0 chr1 151292840 151293344 -45902088 + L1_Mus1 LINE L1 6052 6567 0 4 1739 399 21 0 0 chr1 151293494 151293542 -45901890 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1739 338 61 0 20 chr1 151294076 151294126 -45901306 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 4 1739 293 0 27 0 chr1 151294126 151294163 -45901269 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 4 1739 292 247 0 0 chr1 151294390 151294467 -45900965 + L1MA6 LINE L1 6206 6282 -18 4 1739 294 29 0 0 chr1 151294939 151294974 -45900458 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1739 273 57 0 0 chr1 151295913 151295948 -45899484 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1739 214 185 0 18 chr1 151296031 151296068 -45899364 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 1739 670 243 0 33 chr1 151296068 151296221 -45899211 - B1_Mur3 SINE Alu 0 149 2 4 1739 214 185 0 18 chr1 151296221 151296238 -45899194 + (TTTA)n Simple_repeat Simple_repeat 3 19 0 4 1739 3716 14 123 0 chr1 151298155 151298594 -45896838 + MT2_Mm LTR ERVL 1 493 0 4 1739 38654 16 14 0 chr1 151298594 151303882 -45891550 + MERVL-int LTR ERVL 1 5360 -125 4 1739 390 167 46 35 chr1 151303882 151303969 -45891463 + ORR1A3-int LTR MaLR 553 640 -1323 4 1739 302 0 0 0 chr1 151303969 151304007 -45891425 + MERVL-int LTR ERVL 5448 5485 0 4 1739 3716 14 123 0 chr1 151304007 151304446 -45890986 + MT2_Mm LTR ERVL 1 493 0 4 1739 800 185 0 12 chr1 151304450 151304634 -45890798 - Lx7 LINE L1 -1774 5922 5744 4 1739 458 231 7 22 chr1 151304612 151304749 -45890683 + L1_Mur3 LINE L1 4108 4242 -1638 4 1739 3843 284 61 46 chr1 151304740 151306274 -45889158 + Lx6 LINE L1 5901 7456 -4 4 1739 23 0 0 0 chr1 151306481 151306504 -45888928 + AT_rich Low_complexity Low_complexity 1 23 0 4 1739 1906 95 44 3 chr1 151306930 151307227 -45888205 - IAPEY2_LTR LTR ERVK -16 341 33 4 1739 499 298 99 40 chr1 151307238 151307560 -45887872 + L1M5 LINE L1 4903 5243 -903 4 1739 261 351 85 0 chr1 151307740 151307834 -45887598 + B4A SINE B4 11 112 -180 4 1739 234 328 52 24 chr1 151308081 151308439 -45886993 + L1M5 LINE L1 5437 5811 -351 4 1739 2933 73 22 5 chr1 151308769 151309183 -45886249 + BGLII LTR ERVK 1 421 0 4 1739 549 135 0 0 chr1 151309208 151309297 -45886135 + (CACG)n Simple_repeat Simple_repeat 1 89 0 4 1739 264 91 0 0 chr1 151309377 151309421 -45886011 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1739 357 24 0 0 chr1 151309421 151309463 -45885969 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1739 398 279 0 125 chr1 151309674 151309837 -45885595 + RSINE1 SINE B4 5 145 -20 4 1739 207 69 0 0 chr1 151309837 151309866 -45885566 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1739 398 279 0 125 chr1 151309866 151309886 -45885546 + RSINE1 SINE B4 146 165 0 4 1739 914 343 31 20 chr1 151310193 151310741 -45884691 + Lx8 LINE L1 6241 6794 -679 4 1739 5952 59 53 0 chr1 151311832 151312599 -45882833 - RLTR13C2 LTR ERVK 0 808 1 4 1739 272 180 22 11 chr1 151313276 151313370 -45882062 + L1Md_A LINE L1 356 452 -6186 4 1739 16558 34 2 2 chr1 151313341 151315439 -45879993 + L1Md_A LINE L1 3490 5586 -297 4 1739 7961 47 2 31 chr1 151315440 151316484 -45878948 + L1Md_A LINE L1 5588 6582 0 4 1739 226 324 14 0 chr1 151316797 151316871 -45878561 + L2 LINE L2 2833 2907 -512 4 1739 3384 47 2 5 chr1 151319395 151319819 -45875613 - L1Md_F3 LINE L1 -2 6582 6160 4 1739 408 287 39 30 chr1 151319853 151320083 -45875349 - L1MB1 LINE L1 -179 5989 5758 4 1739 296 259 173 42 chr1 151320377 151320735 -45874697 + L1M3 LINE L1 4310 4714 -1426 4 1739 8297 138 15 7 chr1 151320739 151322215 -45873217 + Lx2 LINE L1 5513 6997 0 4 1739 3001 127 51 10 chr1 151324067 151324576 -45870856 + Lx2 LINE L1 6450 6979 -18 4 1739 1259 27 0 0 chr1 151324917 151325063 -45870369 - B1_Mus2 SINE Alu 0 147 2 4 1739 3225 58 7 5 chr1 151325063 151325480 -45869952 + L1Md_F2 LINE L1 6165 6582 0 4 1739 2748 126 34 0 chr1 151326033 151326469 -45868963 - Lx LINE L1 -3 6651 6201 4 1739 1696 144 25 0 chr1 151326469 151326753 -45868679 + Lx LINE L1 5506 5796 -87 4 1739 774 40 10 0 chr1 151326753 151326854 -45868578 + B1_Mm SINE Alu 46 147 0 4 1739 929 95 0 0 chr1 151326876 151327013 -45868419 + Lx LINE L1 5783 5919 -735 4 1739 21 0 0 0 chr1 151327336 151327357 -45868075 + AT_rich Low_complexity Low_complexity 1 21 0 4 1739 495 261 10 11 chr1 151328523 151328641 -45866791 - B1_Mur2 SINE Alu -8 112 1 4 1739 687 35 0 0 chr1 151328701 151328787 -45866645 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1739 692 309 20 94 chr1 151328811 151329108 -45866324 - B4A SINE B4 0 292 18 4 1739 2543 227 44 3 chr1 151329320 151329917 -45865515 - Lx2B LINE L1 -5 6995 6375 4 1739 1090 175 29 0 chr1 151329925 151330165 -45865267 - Lx2B LINE L1 -733 6267 6021 4 1739 315 161 0 0 chr1 151330165 151330221 -45865211 + CT-rich Low_complexity Low_complexity 3 58 0 4 1739 4682 148 69 11 chr1 151330223 151331131 -45864301 - L1_Mus2 LINE L1 0 6566 5606 4 1739 1617 192 1 0 chr1 151331138 151331453 -45863979 + Lx6 LINE L1 5376 5686 -1774 4 1739 758 232 6 0 chr1 151331480 151331644 -45863788 - Lx4B LINE L1 -426 6632 6468 4 1739 1051 236 223 35 chr1 151331653 151332170 -45863262 - RMER20B LTR ERVK -4 623 10 4 1739 1342 203 36 112 chr1 151332185 151332312 -45863120 - Lx5 LINE L1 -619 6431 6310 4 1739 4759 100 15 61 chr1 151332312 151333099 -45862333 - RMER17A LTR ERVK 0 751 1 4 1739 1342 203 36 112 chr1 151333099 151333409 -45862023 - Lx5 LINE L1 -741 6309 6027 4 1739 425 170 49 20 chr1 151333414 151333516 -45861916 + Lx6 LINE L1 6644 6748 -310 4 1739 1189 220 60 27 chr1 151333556 151333855 -45861577 + Lx5 LINE L1 6729 7037 -13 4 1739 606 28 0 0 chr1 151333856 151333928 -45861504 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 4 1739 602 238 28 14 chr1 151334698 151334843 -45860589 + B1_Mur4 SINE Alu 3 149 -1 4 1739 2388 154 14 19 chr1 151335285 151335703 -45859729 + Lx LINE L1 6238 6653 -1 4 1739 654 295 40 22 chr1 151336757 151336953 -45858479 + ORR1C1 LTR MaLR 1 199 -220 4 1739 1043 142 0 0 chr1 151338360 151338515 -45856917 + ORR1C1 LTR MaLR 224 378 0 4 1739 1227 328 97 29 chr1 151338556 151339287 -45856145 + Lx8 LINE L1 6553 7333 -140 4 1739 433 205 183 18 chr1 151339365 151339529 -45855903 + Lx6 LINE L1 1060 1250 -6478 4 1739 37088 32 1 7 chr1 151339546 151345532 -45849900 - L1Md_T LINE L1 -1 6581 641 4 1739 432 80 0 13 chr1 151345534 151345610 -45849822 - L1Md_T LINE L1 -6019 705 631 4 1739 7676 208 31 12 chr1 151345609 151346904 -45848528 + Lx6 LINE L1 1225 2565 -3315 4 1739 6188 41 1 5 chr1 151346904 151347661 -45847771 + L1Md_F2 LINE L1 5829 6582 0 4 1739 7676 208 31 12 chr1 151347661 151348438 -45846994 + Lx6 LINE L1 2566 3334 -2546 4 1739 438 20 0 0 chr1 151348452 151348503 -45846929 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1739 1279 50 0 0 chr1 151348503 151348663 -45846769 - B2_Mm1t SINE B2 -33 160 1 4 1739 4685 59 0 3 chr1 151348663 151349244 -45846188 + L1Md_F2 LINE L1 5988 6566 -16 4 1739 874 183 187 82 chr1 151349250 151349555 -45845877 + Lx6 LINE L1 3318 3654 -2226 4 1739 1646 172 44 69 chr1 151349544 151349980 -45845452 + Lx6 LINE L1 4002 4426 -1454 4 1739 1047 24 0 0 chr1 151349983 151350108 -45845324 + B1_Mus1 SINE Alu 19 143 -5 4 1739 237 65 0 0 chr1 151350144 151350175 -45845257 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 4 1739 1946 159 73 62 chr1 151350175 151350567 -45844865 - Lx3_Mus LINE L1 -23 6986 6593 4 1739 4061 101 19 7 chr1 151350567 151351163 -45844269 - L1_Mus4 LINE L1 -1 6635 6033 4 1739 1946 159 73 62 chr1 151351163 151351252 -45844180 - Lx3_Mus LINE L1 -417 6592 6500 4 1739 3484 166 17 24 chr1 151351240 151351951 -45843481 - L1_Mur2 LINE L1 -1194 4683 3978 4 1739 4179 182 45 1 chr1 151351950 151352837 -45842595 + L1_Mm LINE L1 4690 5615 -268 4 1739 2184 154 6 3 chr1 151352833 151353191 -45842241 + Lx LINE L1 6036 6394 -260 4 1739 1857 48 0 0 chr1 151353191 151353420 -45842012 - ORR1A1 LTR MaLR 0 346 118 4 1739 2135 96 65 20 chr1 151353421 151353772 -45841660 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1739 52304 30 8 6 chr1 151353776 151360233 -45835199 - IAPEz-int LTR ERVK -3 6478 8 4 1739 2135 96 65 20 chr1 151360233 151360584 -45834848 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1739 859 83 0 0 chr1 151360584 151360705 -45834727 - ORR1A1 LTR MaLR -224 122 2 4 1739 1455 152 16 8 chr1 151360705 151360963 -45834469 + Lx LINE L1 6389 6648 -6 4 1739 1811 198 18 11 chr1 151360965 151361404 -45834028 + Lx6 LINE L1 4441 4882 -995 4 1739 3132 16 3 11 chr1 151361409 151361779 -45833653 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1739 53112 23 16 1 chr1 151361779 151368157 -45827275 - IAPEz-int LTR ERVK 0 6481 8 4 1739 3132 16 3 11 chr1 151368157 151368527 -45826905 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1739 3913 208 42 28 chr1 151368539 151369814 -45825618 + Lx6 LINE L1 4895 6193 -1267 4 1739 1380 252 87 28 chr1 151369827 151369990 -45825442 + Lx6 LINE L1 6998 7178 -282 4 1739 891 87 0 0 chr1 151369990 151370116 -45825316 + (TC)n Simple_repeat Simple_repeat 2 127 0 4 1739 1108 98 0 0 chr1 151370118 151370261 -45825171 - B1_Mus1 SINE Alu -5 143 1 4 1739 1380 252 87 28 chr1 151370261 151370357 -45825075 + Lx6 LINE L1 7179 7281 -179 4 1739 1121 71 0 6 chr1 151370357 151370514 -45824918 + (CA)n Simple_repeat Simple_repeat 1 156 0 4 1739 1380 252 87 28 chr1 151370514 151370686 -45824746 + Lx6 LINE L1 7282 7458 -2 4 1739 207 204 0 0 chr1 151370873 151370922 -45824510 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1739 283 61 40 20 chr1 151371551 151371601 -45823831 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 1739 22 0 0 0 chr1 151371783 151371805 -45823627 + AT_rich Low_complexity Low_complexity 1 22 0 5 1739 336 313 133 70 chr1 151374430 151374588 -45820844 - B3 SINE B2 -7 209 42 5 1739 869 309 83 65 chr1 151374832 151375293 -45820139 + L1_Mur3 LINE L1 4696 5159 -721 5 1739 5491 161 18 9 chr1 151375293 151376250 -45819182 - Lx4A LINE L1 -2 7056 6092 5 1739 869 309 83 65 chr1 151376250 151376737 -45818695 + L1_Mur3 LINE L1 5160 5661 -219 5 1739 1295 296 192 29 chr1 151377213 151377857 -45817575 + Lx8 LINE L1 6189 6955 -518 5 1739 459 0 0 0 chr1 151377857 151377908 -45817524 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 5 1739 1295 296 192 29 chr1 151377908 151378166 -45817266 + Lx8 LINE L1 6956 7237 -236 5 1739 943 278 113 6 chr1 151378521 151379131 -45816301 + L1_Rod LINE L1 903 1570 -4277 5 1739 848 278 10 25 chr1 151379141 151379340 -45816092 - B3A SINE B2 0 198 3 5 1739 400 296 86 26 chr1 151379350 151379582 -45815850 + Lx8 LINE L1 7226 7471 -2 5 1739 229 340 71 68 chr1 151380318 151380599 -45814833 + MLT1J-int LTR MaLR 535 816 -571 5 1739 731 345 119 17 chr1 151380653 151381013 -45814419 + MLT1J-int LTR MaLR 906 1302 -85 5 1739 2835 60 39 16 chr1 151381805 151382192 -45813240 - MTA_Mm LTR MaLR 0 396 1 5 1739 850 190 3 19 chr1 151382485 151382779 -45812653 + CT-rich Low_complexity Low_complexity 1 289 0 5 1739 210 26 77 0 chr1 151383116 151383155 -45812277 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1739 387 266 45 68 chr1 151383354 151383487 -45811945 - MTEa LTR MaLR -239 140 11 5 1739 257 296 81 10 chr1 151383555 151383645 -45811787 + B3A SINE B2 5 102 -96 5 1739 279 0 0 0 chr1 151383645 151383676 -45811756 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1739 4379 60 0 11 chr1 151383821 151384393 -45811039 - L1Md_F2 LINE L1 -10 6572 6007 5 1739 1540 76 0 5 chr1 151384393 151384605 -45810827 + L1Md_F2 LINE L1 5797 6007 -575 5 1739 234 91 0 0 chr1 151385515 151385548 -45809884 + (GAA)n Simple_repeat Simple_repeat 1 33 0 5 217 4089 59 121 2 chr1 151387682 151388226 -45807206 - L1_Mus1 LINE L1 0 6567 5959 5 1740 198 0 0 0 chr1 151388509 151388531 -45806901 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1740 192 77 0 0 chr1 151388925 151388951 -45806481 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1740 26 30 0 0 chr1 151391248 151391281 -45804151 + AT_rich Low_complexity Low_complexity 1 33 0 5 1740 303 141 0 0 chr1 151391417 151391481 -45803951 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1740 26 0 0 0 chr1 151391711 151391737 -45803695 + AT_rich Low_complexity Low_complexity 1 26 0 5 1740 226 292 0 0 chr1 151391739 151391787 -45803645 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1740 3005 39 8 3 chr1 151391796 151392159 -45803273 - RLTR10B2 LTR ERVK 0 365 1 5 1740 341 355 72 22 chr1 151392164 151392302 -45803130 - RSINE1 SINE B4 -9 156 12 5 1740 4171 119 33 6 chr1 151392307 151392948 -45802484 - Lx2B LINE L1 -4 6996 6339 5 1740 457 65 0 38 chr1 151392972 151393052 -45802380 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 1740 194 304 214 14 chr1 151393275 151393415 -45802017 + L2 LINE L2 2738 2905 -514 5 1740 361 245 29 48 chr1 151393420 151393523 -45801909 + MER94 DNA AcHobo 29 129 -5 5 1740 375 23 0 0 chr1 151394322 151394366 -45801066 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1740 420 37 0 0 chr1 151396215 151396269 -45799163 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1740 406 313 48 37 chr1 151396272 151396461 -45798971 - MLT2B1 LTR ERVL -328 192 2 5 1740 23 33 0 0 chr1 151396510 151396540 -45798892 + AT_rich Low_complexity Low_complexity 1 30 0 5 1740 523 284 49 12 chr1 151396706 151396870 -45798562 - Lx8 LINE L1 -163 7310 7141 5 1740 486 299 21 42 chr1 151396881 151397122 -45798310 - Lx8 LINE L1 -514 6959 6724 5 1740 186 133 0 0 chr1 151398445 151398475 -45796957 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1740 204 40 0 0 chr1 151399216 151399241 -45796191 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1740 348 24 0 0 chr1 151399457 151399498 -45795934 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1740 276 261 163 72 chr1 151400895 151401048 -45794384 - RMER6D LTR ERVK -36 684 518 5 1740 216 225 0 0 chr1 151401057 151401097 -45794335 + T-rich Low_complexity Low_complexity 1 40 0 5 1740 395 309 47 31 chr1 151401243 151401415 -45794017 - RLTR21 LTR ERVK -1247 325 1 5 1740 2359 174 70 21 chr1 151401531 151401826 -45793606 - RMER6C LTR ERVK -42 648 326 5 1740 441 0 0 0 chr1 151401826 151401875 -45793557 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1740 180 0 0 0 chr1 151401875 151401895 -45793537 + (CTG)n Simple_repeat Simple_repeat 2 21 0 5 1740 2359 174 70 21 chr1 151401895 151402110 -45793322 - RMER6C LTR ERVK -365 325 113 5 1740 3843 189 43 14 chr1 151402252 151403159 -45792273 + Lx3C LINE L1 6044 6976 0 5 1740 382 28 69 0 chr1 151403462 151403534 -45791898 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 5 1740 675 0 0 0 chr1 151403870 151403945 -45791487 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1740 192 77 0 0 chr1 151404873 151404899 -45790533 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1740 231 36 0 0 chr1 151405139 151405167 -45790265 + (CCCTAA)n Simple_repeat Simple_repeat 2 29 0 5 1740 250 256 28 35 chr1 151405176 151405318 -45790114 + ORR1B1-int LTR MaLR 614 754 -755 5 1740 1057 85 0 0 chr1 151405215 151405356 -45790076 + B1_Mus1 SINE Alu 6 146 -2 5 1740 24 32 0 0 chr1 151405442 151405473 -45789959 + AT_rich Low_complexity Low_complexity 1 31 0 5 1740 306 370 0 0 chr1 151405666 151405766 -45789666 + MIR SINE MIR 152 251 -11 5 1740 756 94 23 8 chr1 151409723 151409851 -45785581 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 5 1740 1152 75 0 7 chr1 151409851 151409999 -45785433 - B1_Mm SINE Alu 0 147 1 5 1740 1079 234 78 0 chr1 151410063 151410320 -45785112 + Lx5 LINE L1 6771 7047 -3 5 1740 1423 184 167 9 chr1 151410427 151410609 -45784823 + MTC LTR MaLR 1 197 -224 5 1740 324 0 0 0 chr1 151410609 151410645 -45784787 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1740 1423 184 167 9 chr1 151410645 151410780 -45784652 + MTC LTR MaLR 198 367 -54 5 1740 189 0 0 0 chr1 151410926 151410947 -45784485 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1740 1150 58 0 0 chr1 151411561 151411699 -45783733 + B1_Mus1 SINE Alu 2 139 -9 5 1740 290 211 10 0 chr1 151412150 151412254 -45783178 + GA-rich Low_complexity Low_complexity 2 106 0 5 1740 333 0 0 0 chr1 151414155 151414192 -45781240 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1740 225 167 0 0 chr1 151414193 151414247 -45781185 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 5 1740 1084 99 0 0 chr1 151414503 151414645 -45780787 + B1_Mus1 SINE Alu 2 143 -5 5 1740 243 0 0 0 chr1 151414649 151414676 -45780756 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1740 573 55 0 0 chr1 151415081 151415154 -45780278 + (CTTTG)n Simple_repeat Simple_repeat 2 74 0 5 1740 1124 75 0 13 chr1 151415154 151415292 -45780140 - B1_Mm SINE Alu -9 138 1 5 1740 354 24 0 0 chr1 151415355 151415396 -45780036 - HAL1-3A_ME LINE L1 -842 2016 1976 5 1740 295 185 24 36 chr1 151415414 151415498 -45779934 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1740 234 0 0 0 chr1 151415617 151415643 -45779789 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1740 21 0 0 0 chr1 151415905 151415926 -45779506 + AT_rich Low_complexity Low_complexity 1 21 0 5 1740 507 252 70 0 chr1 151416107 151416250 -45779182 + Lx8 LINE L1 6294 6446 -1027 5 1740 5804 116 88 3 chr1 151416248 151417239 -45778193 - L1_Mus2 LINE L1 -485 5398 4324 5 1740 6730 86 17 3 chr1 151417233 151418400 -45777032 + L1_Mus2 LINE L1 5382 6565 -1 5 1740 1742 280 62 9 chr1 151418413 151418996 -45776436 + Lx8 LINE L1 6430 7043 -430 5 1740 2515 57 3 15 chr1 151419749 151420085 -45775347 + IAPEY_LTR LTR ERVK 54 385 0 5 1740 192 40 0 0 chr1 151420495 151420520 -45774912 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1740 6593 117 23 12 chr1 151420531 151421722 -45773710 - L1_Mus4 LINE L1 -2 6634 5429 5 1740 4254 96 0 0 chr1 151421707 151422298 -45773134 + Lx3_Mus LINE L1 6359 6949 -60 5 1740 373 388 28 43 chr1 151423087 151423340 -45772092 + MER89 LTR ERV1 186 434 -125 5 1740 7232 148 30 20 chr1 151423367 151425785 -45769647 + Lx2A1 LINE L1 4434 6812 -196 5 1740 679 311 43 23 chr1 151426005 151426308 -45769124 - Lx7 LINE L1 -820 6876 6568 5 1740 2731 148 18 0 chr1 151426323 151426847 -45768585 + Lx3B LINE L1 5380 5922 -1051 5 1740 8248 56 5 2 chr1 151426846 151428646 -45766786 - L1Md_F2 LINE L1 0 6582 4777 5 1740 2950 21 0 6 chr1 151428646 151428985 -45766447 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1740 53301 21 11 7 chr1 151428997 151435447 -45759985 + IAPEz-int LTR ERVK 3 6481 0 5 1740 2950 21 0 6 chr1 151435447 151435786 -45759646 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1740 11296 75 22 9 chr1 151435786 151437448 -45757984 - L1Md_F2 LINE L1 -1101 4782 3100 5 1740 270 194 0 65 chr1 151437523 151437600 -45757832 + A-rich Low_complexity Low_complexity 4 75 0 5 1740 621 158 97 19 chr1 151438150 151438305 -45757127 - Lx3B LINE L1 -4 6969 6803 5 1740 189 309 31 25 chr1 151438358 151438464 -45756968 + MIRm SINE MIR 44 156 -120 5 1740 993 146 6 0 chr1 151438537 151438695 -45756737 + RLTR1B LTR ERV1 354 512 0 5 1740 2616 116 24 133 chr1 151438695 151439422 -45756010 + ORR1B1-int LTR MaLR 989 1772 -191 5 1740 296 261 0 0 chr1 151439421 151439490 -45755942 + Charlie5 DNA MER1_type 2114 2182 -442 5 1740 1561 237 58 19 chr1 151439670 151440100 -45755332 + RMER1C Other Other 892 1338 -4 5 1740 21 0 0 0 chr1 151440711 151440732 -45754700 + AT_rich Low_complexity Low_complexity 1 21 0 5 1740 785 196 126 0 chr1 151440913 151441128 -45754304 + Lx5 LINE L1 5782 6027 -1023 5 1740 2169 122 35 0 chr1 151441121 151441489 -45753943 - Lx4A LINE L1 -1176 4701 4321 5 1740 5361 145 27 13 chr1 151441491 151443004 -45752428 + Lx4A LINE L1 4734 6355 -703 5 1740 2875 160 62 0 chr1 151443004 151443491 -45751941 + Lx4A LINE L1 6540 7056 -2 5 1740 31 0 0 0 chr1 151443508 151443539 -45751893 + AT_rich Low_complexity Low_complexity 1 31 0 5 1740 4195 148 45 2 chr1 151443540 151444625 -45750807 - Lx2B LINE L1 -662 6338 5211 5 1740 3252 201 20 6 chr1 151444625 151445267 -45750165 + Lx2B LINE L1 6350 7000 0 5 1740 4170 248 42 26 chr1 151445267 151446280 -45749152 + Lx5 LINE L1 6014 7043 -7 5 1740 21 57 0 0 chr1 151446286 151446321 -45749111 + AT_rich Low_complexity Low_complexity 1 35 0 5 1740 4461 10 0 0 chr1 151446716 151447209 -45748223 - MT2_Mm LTR ERVL 0 493 1 5 1740 314 0 0 0 chr1 151447209 151447247 -45748185 - MERVL-int LTR ERVL 0 5485 5448 5 1740 366 191 46 35 chr1 151447247 151447334 -45748098 - ORR1A3-int LTR MaLR -1323 640 553 5 1740 40322 18 14 0 chr1 151447334 151452622 -45742810 - MERVL-int LTR ERVL -125 5360 1 5 1740 3731 11 121 0 chr1 151452622 151453062 -45742370 - MT2_Mm LTR ERVL 0 493 1 5 1740 24 32 0 0 chr1 151453581 151453612 -45741820 + AT_rich Low_complexity Low_complexity 1 31 0 5 1740 22 35 0 0 chr1 151453930 151453959 -45741473 + AT_rich Low_complexity Low_complexity 1 29 0 6 1740 1862 307 75 75 chr1 151454087 151455259 -45740173 - Lx9 LINE L1 -115 7529 6358 6 1740 493 129 21 0 chr1 151455273 151455366 -45740066 + CT-rich Low_complexity Low_complexity 2 96 0 6 1740 5934 88 29 5 chr1 151455520 151456353 -45739079 - L1_Mus3 LINE L1 0 6638 5786 6 1740 23 0 0 0 chr1 151456746 151456769 -45738663 + AT_rich Low_complexity Low_complexity 1 23 0 6 1740 1305 89 0 0 chr1 151457956 151458136 -45737296 - L1_Mm LINE L1 -1194 4689 4510 6 1740 2734 76 3 8 chr1 151458136 151458509 -45736923 + L1Md_F2 LINE L1 6197 6567 -15 6 1740 243 170 0 0 chr1 151458992 151459039 -45736393 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1740 195 42 0 0 chr1 151459327 151459351 -45736081 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1740 24 0 0 0 chr1 151461052 151461076 -45734356 + AT_rich Low_complexity Low_complexity 1 24 0 6 1740 4015 185 20 11 chr1 151461084 151461871 -45733561 - Lx2 LINE L1 -1 6996 6203 6 1740 1033 102 6 19 chr1 151461871 151462022 -45733410 - B2_Mm1t SINE B2 -7 186 36 6 1740 583 25 25 0 chr1 151462482 151462563 -45732869 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1740 1207 266 67 39 chr1 151463903 151464259 -45731173 + MTE2b LTR MaLR 13 378 -1 6 1740 378 0 0 0 chr1 151465946 151465988 -45729444 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1740 290 339 135 45 chr1 151466304 151466323 -45729109 - B4A SINE B4 0 292 277 6 1740 270 56 0 0 chr1 151466323 151466359 -45729073 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1740 290 339 135 45 chr1 151466359 151466605 -45728827 - B4A SINE B4 -16 276 3 6 1740 290 373 89 12 chr1 151467377 151467545 -45727887 - Kanga1a DNA Tc2 -435 319 139 6 1740 1060 341 141 35 chr1 151468189 151469041 -45726391 - MTE-int LTR MaLR -564 1016 75 6 1740 224 267 0 16 chr1 151469268 151469329 -45726103 + GA-rich Low_complexity Low_complexity 4 63 0 6 1740 1891 118 72 0 chr1 151469381 151469686 -45725746 + ORR1A2 LTR MaLR 1 327 0 6 1740 31 0 0 0 chr1 151469912 151469943 -45725489 + AT_rich Low_complexity Low_complexity 1 31 0 6 1740 225 362 91 15 chr1 151470117 151470249 -45725183 - B1F2 SINE Alu 0 149 8 6 1740 472 152 8 43 chr1 151470377 151470494 -45724938 - Lx LINE L1 -2 6652 6540 6 1740 211 295 0 37 chr1 151470524 151470605 -45724827 + CT-rich Low_complexity Low_complexity 3 80 0 6 1740 452 274 152 0 chr1 151470630 151470794 -45724638 - B3 SINE B2 0 216 28 6 1740 39 60 0 0 chr1 151470934 151471001 -45724431 + AT_rich Low_complexity Low_complexity 1 67 0 6 1740 2362 217 113 112 chr1 151471027 151471680 -45723752 + RMER13A LTR ERVK 14 679 -181 6 1740 2616 118 7 26 chr1 151471680 151472097 -45723335 + RLTR9E LTR ERVK 1 409 0 6 1740 2362 217 113 112 chr1 151472097 151472195 -45723237 + RMER13A LTR ERVK 680 766 -94 6 1740 24 32 0 0 chr1 151472885 151472916 -45722516 + AT_rich Low_complexity Low_complexity 1 31 0 6 1740 243 88 0 0 chr1 151473556 151473590 -45721842 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1740 22 88 0 0 chr1 151473689 151473746 -45721686 + AT_rich Low_complexity Low_complexity 1 57 0 6 1740 405 0 0 0 chr1 151473965 151474010 -45721422 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1740 23 0 0 0 chr1 151475309 151475332 -45720100 + AT_rich Low_complexity Low_complexity 1 23 0 6 1740 257 51 0 25 chr1 151475956 151475996 -45719436 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1740 269 230 34 42 chr1 151475998 151476116 -45719316 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 6 1740 805 245 49 24 chr1 151476277 151476482 -45718950 + B3 SINE B2 2 211 -5 6 1740 23 54 0 0 chr1 151476630 151476667 -45718765 + AT_rich Low_complexity Low_complexity 1 37 0 6 1740 471 349 27 7 chr1 151476678 151476825 -45718607 + RSINE1 SINE B4 13 162 -3 6 1740 252 0 0 0 chr1 151476845 151476873 -45718559 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1740 232 274 20 0 chr1 151478262 151478313 -45717119 + ID4 SINE ID 18 69 -14 6 1740 228 67 0 0 chr1 151478318 151478348 -45717084 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1740 398 324 99 11 chr1 151478473 151478735 -45716697 + Lx7 LINE L1 7020 7304 -392 6 1740 380 240 78 0 chr1 151478777 151478931 -45716501 - Lx9 LINE L1 -1 7643 7478 6 1740 854 271 9 32 chr1 151480322 151480543 -45714889 - B3 SINE B2 0 216 1 6 1740 21 0 0 0 chr1 151480778 151480799 -45714633 + AT_rich Low_complexity Low_complexity 1 21 0 6 1740 29 28 0 0 chr1 151480867 151480903 -45714529 + AT_rich Low_complexity Low_complexity 1 36 0 6 1740 515 305 44 29 chr1 151481104 151481448 -45713984 + L1_Rod LINE L1 2149 2497 -3383 6 1740 814 315 83 33 chr1 151481561 151481984 -45713448 + Lx8 LINE L1 6592 7035 -438 6 1740 435 266 89 34 chr1 151482900 151483193 -45712239 + L1MB4 LINE L1 1506 1761 -5205 6 1740 941 208 72 21 chr1 151483193 151483492 -45711940 + L1_Rod LINE L1 2448 2801 -3046 6 1740 444 223 28 6 chr1 151483913 151484089 -45711343 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1740 3159 48 5 5 chr1 151484254 151484648 -45710784 - MTA_Mm LTR MaLR -2 394 1 6 1740 8319 69 6 3 chr1 151484648 151485743 -45709689 - MTA_Mm-int LTR MaLR 0 1098 1 6 1740 2956 69 5 3 chr1 151485745 151486136 -45709296 - MTA_Mm LTR MaLR -2 394 3 6 1740 510 125 0 0 chr1 151486344 151486424 -45709008 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 6 1740 21 0 0 0 chr1 151486640 151486661 -45708771 + AT_rich Low_complexity Low_complexity 1 21 0 6 1740 638 40 0 0 chr1 151486661 151486735 -45708697 + L1Md_F2 LINE L1 5513 5586 -297 6 1740 8138 41 1 2 chr1 151486735 151487720 -45707712 + L1Md_F2 LINE L1 5587 6570 -12 6 1740 784 278 95 64 chr1 151487802 151488159 -45707273 - RLTR14 LTR ERV1 -11 371 4 6 1740 1801 266 131 18 chr1 151488492 151488637 -45706795 - Lx6 LINE L1 -4 7456 7290 6 1740 491 0 17 0 chr1 151488637 151488696 -45706736 + (ATATG)n Simple_repeat Simple_repeat 2 61 0 6 1740 1801 266 131 18 chr1 151488696 151489121 -45706311 - Lx6 LINE L1 -171 7289 6822 6 1740 395 175 33 47 chr1 151489126 151489276 -45706156 + CT-rich Low_complexity Low_complexity 3 150 0 6 1740 645 354 51 54 chr1 151489638 151490011 -45705421 - ERVL-E-int LTR ERVL -2013 3654 3283 6 1740 3604 71 0 4 chr1 151490597 151491075 -45704357 + L1_Mus4 LINE L1 6155 6630 -6 6 1740 427 365 127 25 chr1 151491547 151491870 -45703562 - MLT1A LTR MaLR -14 360 5 6 1740 414 266 28 28 chr1 151493016 151493159 -45702273 - L1MA10 LINE L1 -15 6319 6177 6 1740 255 275 65 11 chr1 151493224 151493316 -45702116 - L1MB1 LINE L1 -35 6154 6058 6 1740 445 292 53 0 chr1 151494136 151494249 -45701183 - RSINE1 SINE B4 -44 121 3 6 1740 198 103 0 0 chr1 151494466 151494495 -45700937 + (CAT)n Simple_repeat Simple_repeat 2 30 0 6 1740 2095 177 39 131 chr1 151495380 151495945 -45699487 + RLTR28 LTR ERVL 1 513 -11 6 1740 5190 139 38 92 chr1 151496452 151497490 -45697942 + RLTR13C1 LTR ERVK 1 981 -2 6 1740 246 32 0 0 chr1 151497618 151497649 -45697783 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1740 303 85 0 0 chr1 151497763 151497810 -45697622 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1740 252 161 0 0 chr1 151497962 151498024 -45697408 + CT-rich Low_complexity Low_complexity 1 62 0 6 1740 351 44 0 0 chr1 151498024 151498069 -45697363 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1740 454 336 15 0 chr1 151498070 151498207 -45697225 - RSINE1 SINE B4 -24 141 3 6 1740 830 55 48 0 chr1 151498235 151498381 -45697051 + (GA)n Simple_repeat Simple_repeat 2 154 0 6 1740 591 15 0 0 chr1 151498430 151498498 -45696934 + (GGGAA)n Simple_repeat Simple_repeat 3 70 0 6 1740 24 0 0 0 chr1 151498741 151498765 -45696667 + AT_rich Low_complexity Low_complexity 1 24 0 6 1740 525 293 95 11 chr1 151498942 151499132 -45696300 - Lx8 LINE L1 -132 7341 7136 6 1740 201 303 15 0 chr1 151499479 151499545 -45695887 + GA-rich Low_complexity Low_complexity 2 68 0 6 1740 412 331 63 63 chr1 151500437 151500753 -45694679 + L1MC1 LINE L1 1 316 -6192 1 1740 311 300 22 0 chr1 151501037 151501127 -45694305 + L1MC1 LINE L1 476 567 -5941 1 1740 248 301 48 0 chr1 151501219 151501322 -45694110 + L1MC1 LINE L1 3753 3860 -2461 1 1740 1345 250 27 118 chr1 151501333 151501875 -45693557 - RLTR11A LTR ERVK 0 528 5 2 1740 755 297 157 6 chr1 151502068 151502590 -45692842 + L1MC1 LINE L1 4838 5438 -883 1 1740 932 257 106 14 chr1 151502715 151503138 -45692294 + L1MC1 LINE L1 5959 6420 -88 1 1740 338 202 15 2 chr1 151503374 151503467 -45691965 + L1MA6 LINE L1 6081 6175 -125 3 1740 3141 62 14 0 chr1 151503466 151503882 -45691550 - L1_Mus2 LINE L1 -531 6035 5614 4 1740 3609 77 0 38 chr1 151503882 151504385 -45691047 + L1_Mus2 LINE L1 6083 6566 0 4 1740 309 231 27 18 chr1 151504385 151504495 -45690937 + L1MA6 LINE L1 6164 6274 -26 3 1740 189 74 0 0 chr1 151505195 151505222 -45690210 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 1740 975 95 44 0 chr1 151505920 151506057 -45689375 - B1_Mus1 SINE Alu -5 143 1 6 1740 2561 177 84 136 chr1 151506082 151506580 -45688852 - RMER6A LTR ERVK 0 756 321 7 1740 2608 103 36 7 chr1 151506580 151507001 -45688431 - L1_Mus4 LINE L1 -8 6628 6196 8 1740 2561 177 84 136 chr1 151507001 151507299 -45688133 - RMER6A LTR ERVK -436 320 1 7 1740 241 272 12 36 chr1 151507515 151507599 -45687833 - L1MC4 LINE L1 -1493 6549 6468 9 1740 22 0 0 0 chr1 151507800 151507822 -45687610 + AT_rich Low_complexity Low_complexity 1 22 0 1 1740 3172 76 6 41 chr1 151507897 151508363 -45687069 - Lx3_Mus LINE L1 -874 6135 5686 1 1740 610 122 36 0 chr1 151508957 151509096 -45686336 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1740 884 292 50 0 chr1 151509109 151509349 -45686083 + MTE2b LTR MaLR 5 256 -123 1 1740 2521 33 0 3 chr1 151509723 151510026 -45685406 + L1Md_F2 LINE L1 5285 5586 -297 1 1740 8356 34 0 3 chr1 151510026 151511011 -45684421 + L1Md_F2 LINE L1 5587 6568 -14 1 1740 271 350 35 58 chr1 151511308 151511481 -45683951 + MIR SINE MIR 26 194 -68 1 1740 567 74 0 0 chr1 151512454 151512535 -45682897 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1740 474 33 0 0 chr1 151512535 151512595 -45682837 + (CTA)n Simple_repeat Simple_repeat 1 60 0 1 1740 384 317 14 123 chr1 151513082 151513288 -45682144 + ID_B1 SINE B4 2 224 0 1 1740 468 290 0 109 chr1 151513238 151513385 -45682047 + B1_Mur1 SINE Alu 15 146 -2 1 1740 12035 40 2 1 chr1 151513431 151514975 -45680457 - L1Md_F2 LINE L1 -627 5955 4411 2 1740 3432 52 7 0 chr1 151514971 151515414 -45680018 + L1_Mm LINE L1 4070 4515 -1368 2 1740 730 284 48 34 chr1 151515414 151515622 -45679810 + B3 SINE B2 6 216 0 2 1740 422 252 0 8 chr1 151515639 151515771 -45679661 + GA-rich Low_complexity Low_complexity 3 133 0 2 1740 31 44 0 0 chr1 151515811 151515856 -45679576 + AT_rich Low_complexity Low_complexity 1 45 0 2 1740 240 262 0 16 chr1 151515948 151516010 -45679422 - MLT1A1 LTR MaLR -43 365 305 2 1740 29 28 0 0 chr1 151516321 151516357 -45679075 + AT_rich Low_complexity Low_complexity 1 36 0 2 1740 340 303 78 47 chr1 151516439 151516695 -45678737 + L1MEf LINE L1 683 946 -5148 2 1741 1279 267 26 26 chr1 151519814 151520191 -45675241 + MTE2a LTR MaLR 1 377 -2 2 1741 2445 272 141 51 chr1 151520653 151521922 -45673510 - Lx9 LINE L1 -20 7624 6242 2 1741 200 125 40 40 chr1 151521926 151521976 -45673456 + (CATTA)n Simple_repeat Simple_repeat 4 53 0 3 1741 6044 112 5 18 chr1 151522054 151522992 -45672440 - Lx3A LINE L1 -3 6978 6053 3 1741 367 183 178 0 chr1 151522996 151523091 -45672341 + L1_Mur1 LINE L1 313 460 -6522 3 1741 24 0 0 0 chr1 151523171 151523195 -45672237 + AT_rich Low_complexity Low_complexity 1 24 0 3 1741 1300 264 33 17 chr1 151523483 151523903 -45671529 - L1_Rod LINE L1 0 5847 5421 3 1741 3120 249 53 50 chr1 151523899 151524637 -45670795 - L1_Rod LINE L1 -1459 4388 3663 3 1741 240 35 0 0 chr1 151524637 151524666 -45670766 + (CTG)n Simple_repeat Simple_repeat 1 29 0 3 1741 3120 249 53 50 chr1 151524666 151525201 -45670231 - L1_Rod LINE L1 -2185 3662 3111 3 1741 539 214 0 0 chr1 151525210 151525322 -45670110 - L1_Rod LINE L1 -6491 681 570 3 1741 1113 95 0 0 chr1 151527221 151527368 -45668064 + B1_Mus1 SINE Alu 2 148 0 3 1741 327 167 0 0 chr1 151527370 151527460 -45667972 + A-rich Low_complexity Low_complexity 1 90 0 3 1741 425 230 59 42 chr1 151527468 151527586 -45667846 + B3A SINE B2 1 120 -78 3 1741 305 131 0 16 chr1 151528417 151528479 -45666953 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1741 291 267 50 88 chr1 151529498 151529658 -45665774 + RLTR14-int LTR ERV1 5051 5204 -113 4 1741 371 297 72 7 chr1 151529782 151529921 -45665511 + RLTR14 LTR ERV1 3 150 -232 4 1741 1643 281 115 94 chr1 151530054 151530779 -45664653 + RMER1C Other Other 427 1195 -147 4 1741 726 89 0 0 chr1 151530779 151530891 -45664541 + (TTGG)n Simple_repeat Simple_repeat 4 115 0 4 1741 1643 281 115 94 chr1 151530891 151531062 -45664370 + RMER1C Other Other 1196 1342 0 4 1741 380 212 141 0 chr1 151531062 151531161 -45664271 + RLTR14 LTR ERV1 138 250 -132 4 1741 589 221 21 35 chr1 151531267 151531412 -45664020 + B1_Mur4 SINE Alu 1 143 -7 4 1741 531 0 0 0 chr1 151531414 151531473 -45663959 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1741 393 22 0 0 chr1 151533200 151533246 -45662186 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1741 3003 48 11 0 chr1 151533316 151533692 -45661740 - L1Md_F3 LINE L1 -1 6583 6204 4 1741 524 200 8 0 chr1 151533880 151534005 -45661427 + CT-rich Low_complexity Low_complexity 1 126 0 4 1741 716 271 30 29 chr1 151534290 151534709 -45660723 + Lx7 LINE L1 5508 5921 -379 4 1741 2684 64 3 6 chr1 151535570 151535917 -45659515 + ORR1A1 LTR MaLR 1 346 0 5 1741 711 266 0 0 chr1 151536313 151536452 -45658980 - B1_Mur1 SINE Alu -2 147 9 5 1741 422 291 94 0 chr1 151536744 151536861 -45658571 - ID_B1 SINE B4 -16 208 81 5 1741 21 0 0 0 chr1 151537033 151537054 -45658378 + AT_rich Low_complexity Low_complexity 1 21 0 5 1741 289 294 136 9 chr1 151537664 151537774 -45657658 + MER5A1 DNA MER1_type 31 154 -12 5 1741 22 35 0 0 chr1 151537890 151537919 -45657513 + AT_rich Low_complexity Low_complexity 1 29 0 5 1741 270 0 0 0 chr1 151538049 151538079 -45657353 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1741 2028 177 194 16 chr1 151539447 151539490 -45655942 - MT2B LTR ERVL 0 601 556 5 1741 216 86 0 0 chr1 151539490 151539525 -45655907 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1741 2028 177 194 16 chr1 151539525 151539991 -45655441 - MT2B LTR ERVL -46 555 1 5 1741 285 29 0 0 chr1 151540171 151540205 -45655227 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1741 371 281 169 12 chr1 151540539 151540705 -45654727 - B3A SINE B2 -5 193 2 6 1741 641 76 11 0 chr1 151540722 151540814 -45654618 + (TC)n Simple_repeat Simple_repeat 1 93 0 6 1741 273 267 65 22 chr1 151540881 151540973 -45654459 - HAL1 LINE L1 -2036 471 376 6 1741 880 252 53 16 chr1 151540997 151541327 -45654105 + Lx6 LINE L1 5505 5899 -1561 6 1741 206 291 11 34 chr1 151541426 151541515 -45653917 + GA-rich Low_complexity Low_complexity 3 89 0 6 1741 336 24 0 0 chr1 151542954 151542995 -45652437 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1741 393 22 0 0 chr1 151542995 151543041 -45652391 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1741 286 311 0 0 chr1 151543762 151543852 -45651580 + CT-rich Low_complexity Low_complexity 2 91 0 6 1741 4177 64 2 0 chr1 151545152 151545680 -45649752 - L1_Mus1 LINE L1 -2 6565 6037 6 1741 293 306 92 0 chr1 151546150 151546248 -45649184 - PB1D10 SINE Alu -7 110 4 6 1741 196 257 123 44 chr1 151546840 151546954 -45648478 + L3b LINE CR1 82 204 -278 7 1741 26 64 0 0 chr1 151547134 151547181 -45648251 + AT_rich Low_complexity Low_complexity 1 47 0 7 1741 21 0 0 0 chr1 151548233 151548254 -45647178 + AT_rich Low_complexity Low_complexity 1 21 0 7 1741 478 0 32 0 chr1 151548521 151548583 -45646849 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1741 258 230 89 139 chr1 151548644 151548745 -45646687 + PB1D10 SINE Alu 25 120 -29 7 1741 361 198 69 0 chr1 151548992 151549093 -45646339 - Lx9 LINE L1 -13 7631 7524 7 1741 387 0 0 0 chr1 151549095 151549138 -45646294 + (TATG)n Simple_repeat Simple_repeat 4 46 0 7 1741 2910 212 78 60 chr1 151549138 151549508 -45645924 + RMER17B LTR ERVK 2 397 -561 7 1741 402 39 0 0 chr1 151549508 151549560 -45645872 + (TCC)n Simple_repeat Simple_repeat 3 54 0 7 1741 2910 212 78 60 chr1 151549560 151549588 -45645844 + RMER17B LTR ERVK 398 416 -542 7 1741 1299 79 0 0 chr1 151549588 151549765 -45645667 + (TTCTCC)n Simple_repeat Simple_repeat 2 178 0 7 1741 2910 212 78 60 chr1 151549765 151550161 -45645271 + RMER17B LTR ERVK 417 811 -147 7 1741 496 163 21 11 chr1 151550215 151550308 -45645124 - Lx9 LINE L1 -179 7465 7372 7 1741 1628 207 9 3 chr1 151550311 151550635 -45644797 + Lx9 LINE L1 6602 6927 -717 8 1741 2014 182 11 8 chr1 151552135 151552501 -45642931 + ORR1B2 LTR MaLR 1 367 0 8 1741 1312 278 58 13 chr1 151553006 151553455 -45641977 - Lx9 LINE L1 -492 7152 6684 7 1741 768 281 50 47 chr1 151553523 151553926 -45641506 + Lx9 LINE L1 7215 7618 -26 8 1741 33 56 0 0 chr1 151553930 151553984 -45641448 + AT_rich Low_complexity Low_complexity 1 54 0 8 1741 988 60 98 0 chr1 151554072 151554205 -45641227 + B1_Mm SINE Alu 1 146 -1 8 1741 395 343 21 0 chr1 151554345 151554485 -45640947 + MER119 DNA MER1_type 253 395 -188 8 1741 575 200 9 0 chr1 151554507 151554612 -45640820 - U6 snRNA snRNA -1 106 1 8 1741 7716 85 6 5 chr1 151554895 151556112 -45639320 + L1_Mus3 LINE L1 5432 6638 0 8 1741 232 319 14 0 chr1 151557390 151557462 -45637970 + B3 SINE B2 1 73 -143 8 1741 585 62 0 0 chr1 151557482 151557562 -45637870 + L1_Mus1 LINE L1 6487 6566 -1 8 1741 475 289 25 0 chr1 151557599 151557720 -45637712 + B3 SINE B2 88 211 -5 8 1741 378 305 9 0 chr1 151557864 151557969 -45637463 + LTR40b LTR ERVL 344 449 -13 9 1741 1898 103 77 32 chr1 151558291 151558601 -45636831 + ORR1A3 LTR MaLR 1 324 -2 9 1741 2326 192 25 43 chr1 151558601 151559392 -45636040 + ORR1A3-int LTR MaLR 3 764 -1028 9 1741 342 0 0 0 chr1 151559553 151559591 -45635841 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1741 24 0 0 0 chr1 151561856 151561880 -45633552 + AT_rich Low_complexity Low_complexity 1 24 0 9 1741 244 319 8 98 chr1 151562434 151562566 -45632866 + PB1 SINE Alu 1 120 -7 9 1741 237 333 25 0 chr1 151562581 151562662 -45632770 + ID2 SINE ID 1 83 0 9 1741 1954 42 0 0 chr1 151563064 151563301 -45632131 + L1Md_T LINE L1 6346 6582 0 9 1741 397 298 31 48 chr1 151565311 151565495 -45629937 + ID_B1 SINE B4 86 269 -23 9 1741 249 304 185 0 chr1 151565929 151566021 -45629411 - PB1D9 SINE Alu -3 117 9 9 1741 1827 133 7 20 chr1 151566396 151566696 -45628736 + Lx3_Mus LINE L1 6670 6965 -44 9 1741 249 108 0 0 chr1 151566720 151566757 -45628675 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1741 825 62 46 0 chr1 151566777 151566907 -45628525 + (GAAAA)n Simple_repeat Simple_repeat 4 139 0 1 1741 23 0 0 0 chr1 151568256 151568279 -45627153 + AT_rich Low_complexity Low_complexity 1 23 0 1 1741 265 88 53 0 chr1 151568385 151568442 -45626990 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1 1741 269 286 59 51 chr1 151568444 151568562 -45626870 - RMER12 LTR ERVK -474 848 730 1 1741 1007 269 53 18 chr1 151568568 151568909 -45626523 + Lx9 LINE L1 6813 7165 -479 1 1741 261 0 0 0 chr1 151569067 151569096 -45626336 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1741 1412 281 71 3 chr1 151569131 151569512 -45625920 + MTD LTR MaLR 13 419 0 1 1741 808 254 77 87 chr1 151569512 151570097 -45625335 + MTD-int LTR MaLR 843 1258 0 1 1741 1385 255 49 49 chr1 151570105 151570368 -45625064 + MTD LTR MaLR 32 290 -129 1 1741 3508 68 2 2 chr1 151570368 151570822 -45624610 - L1_Mus2 LINE L1 -2 6564 6111 1 1741 1385 255 49 49 chr1 151570822 151570946 -45624486 + MTD LTR MaLR 291 419 0 1 1741 410 289 17 23 chr1 151573440 151573617 -45621815 + Lx8 LINE L1 6761 6936 -537 1 1741 303 179 0 0 chr1 151573646 151573713 -45621719 + GA-rich Low_complexity Low_complexity 2 68 0 1 1741 3907 108 90 6 chr1 151574207 151574832 -45620600 - Lx3_Mus LINE L1 0 7009 6333 1 1741 658 209 110 6 chr1 151574832 151574996 -45620436 - RMER5 LTR ERV1 -22 512 332 1 1741 297 197 0 0 chr1 151575004 151575075 -45620357 + (CACCAT)n Simple_repeat Simple_repeat 1 71 0 1 1741 627 319 76 21 chr1 151575121 151575412 -45620020 + Lx8 LINE L1 6935 7241 -232 1 1741 257 0 30 0 chr1 151575435 151575468 -45619964 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1741 3589 185 44 54 chr1 151575534 151575859 -45619573 + RMER17B LTR ERVK 1 340 -618 1 1741 558 43 0 0 chr1 151575859 151575928 -45619504 + (TTC)n Simple_repeat Simple_repeat 3 71 0 1 1741 3589 197 46 62 chr1 151575928 151576483 -45618949 + RMER17B LTR ERVK 341 792 -166 1 1741 354 241 25 0 chr1 151576827 151576906 -45618526 + RSINE1 SINE B4 63 143 -22 1 1741 919 277 133 3 chr1 151577113 151577435 -45617997 - ORR1D1 LTR MaLR -10 364 1 1 1741 4448 119 57 0 chr1 151577528 151578226 -45617206 + Lx2A1 LINE L1 6262 6999 -9 1 1741 709 337 135 11 chr1 151578599 151579057 -45616375 + LTR53 LTR ERVL 5 519 0 1 1741 193 113 75 0 chr1 151579917 151579970 -45615462 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 1 1741 557 225 8 4 chr1 151579967 151580230 -45615202 + (CA)n Simple_repeat Simple_repeat 1 263 0 1 1741 293 361 55 7 chr1 151581614 151581759 -45613673 + MIR SINE MIR 59 210 -52 1 1741 509 210 0 0 chr1 151581897 151581978 -45613454 - 5S rRNA rRNA -30 91 11 1 1741 5466 242 28 22 chr1 151581978 151583370 -45612062 + Lx6 LINE L1 5882 7281 -179 1 1741 345 271 13 83 chr1 151583461 151583618 -45611814 + Lx7 LINE L1 7184 7329 -367 1 1741 396 0 0 0 chr1 151583623 151583667 -45611765 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1741 884 164 7 0 chr1 151584415 151584561 -45610871 - B1_Mur4 SINE Alu 0 150 4 1 1741 867 256 68 109 chr1 151584924 151585363 -45610069 + RLTR23 LTR ERV1 10 430 0 1 1741 264 30 0 0 chr1 151586849 151586882 -45608550 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1741 315 211 0 0 chr1 151587788 151587878 -45607554 + (TTG)n Simple_repeat Simple_repeat 2 91 0 1 1741 1554 277 23 13 chr1 151588660 151589048 -45606384 + MTD LTR MaLR 20 411 -8 1 1741 400 270 79 93 chr1 151589048 151589318 -45606114 + MTD-int LTR MaLR 1 222 -1036 1 1741 1655 223 76 136 chr1 151589285 151590051 -45605381 + MTD-int LTR MaLR 576 1456 -507 1 1741 1353 257 36 29 chr1 151590051 151590467 -45604965 + MTD LTR MaLR 1 419 0 1 1741 288 0 0 0 chr1 151591264 151591296 -45604136 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1741 381 22 0 0 chr1 151591296 151591341 -45604091 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1741 599 206 28 28 chr1 151591950 151592095 -45603337 + B1_Mur2 SINE Alu 5 149 0 1 1741 423 295 32 93 chr1 151593535 151593782 -45601650 - HAL1-2a_MD LINE L1 -522 2502 2271 1 1741 963 298 20 15 chr1 151594574 151594969 -45600463 + L1M2 LINE L1 4807 5203 -940 1 1741 342 0 0 0 chr1 151597076 151597114 -45598318 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1741 669 308 11 0 chr1 151597872 151598054 -45597378 - B3A SINE B2 -13 185 2 1 1741 589 225 31 0 chr1 151598156 151598285 -45597147 + Lx9 LINE L1 6703 6835 -809 1 1741 261 224 36 45 chr1 151598307 151598419 -45597013 - Lx9 LINE L1 0 7644 7534 1 1741 216 0 0 0 chr1 151598449 151598473 -45596959 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1741 2590 189 122 18 chr1 151598473 151598552 -45596880 + Lx9 LINE L1 6858 6927 -717 1 1741 198 71 0 0 chr1 151598552 151598580 -45596852 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1741 2590 189 122 18 chr1 151598580 151599213 -45596219 + Lx9 LINE L1 6928 7643 -1 1 1741 184 164 78 47 chr1 151599431 151599495 -45595937 - L3 LINE CR1 -12 4477 4412 1 1741 210 351 73 68 chr1 151600723 151600900 -45594532 + MIRc SINE MIR 86 263 -5 1 1741 9897 47 0 0 chr1 151601470 151603429 -45592003 - L1Md_F2 LINE L1 -1 6581 4623 1 1741 235 224 90 0 chr1 151603766 151603833 -45591599 + MTEb LTR MaLR 294 366 -13 1 1741 761 279 31 31 chr1 151603945 151604137 -45591295 - B3A SINE B2 -6 192 1 1 1741 2148 76 66 3 chr1 151604722 151605026 -45590406 + L1_Mus3 LINE L1 6304 6626 -12 1 1741 299 271 0 0 chr1 151605280 151605339 -45590093 + B4A SINE B4 13 71 -221 1 1741 348 24 0 0 chr1 151605451 151605492 -45589940 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1741 516 297 28 37 chr1 151605970 151606187 -45589245 - B3 SINE B2 0 216 2 1 1741 55 29 0 0 chr1 151607004 151607073 -45588359 + AT_rich Low_complexity Low_complexity 1 69 0 1 1741 357 82 0 0 chr1 151607096 151607145 -45588287 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1741 226 244 134 0 chr1 151608048 151608167 -45587265 - L1MB1 LINE L1 -4 6164 6030 1 1741 7967 119 26 13 chr1 151608284 151609953 -45585479 + Lx3B LINE L1 5272 6970 -3 1 1741 442 280 123 32 chr1 151610007 151610347 -45585085 - L1MB1 LINE L1 -304 5864 5494 1 1741 487 314 51 24 chr1 151610421 151610635 -45584797 - L1M2 LINE L1 -758 5385 5167 1 1741 414 0 0 0 chr1 151610635 151610681 -45584751 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1741 487 314 51 24 chr1 151610681 151610720 -45584712 - L1M2 LINE L1 -977 5166 5126 1 1741 698 47 0 0 chr1 151610829 151610914 -45584518 + BC1_Mm scRNA scRNA 2 86 -66 1 1741 229 300 108 20 chr1 151610914 151610931 -45584501 + RSINE1 SINE B4 3 113 -52 1 1741 521 340 0 39 chr1 151610948 151611101 -45584331 + RSINE1 SINE B4 2 148 -17 1 1741 330 26 0 0 chr1 151611101 151611140 -45584292 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 1741 220 299 15 0 chr1 151611310 151611377 -45584055 + (TATG)n Simple_repeat Simple_repeat 3 70 0 1 1741 456 294 86 19 chr1 151611383 151611650 -45583782 - B4A SINE B4 -4 288 4 1 1741 245 209 0 15 chr1 151613022 151613090 -45582342 + CT-rich Low_complexity Low_complexity 1 67 0 1 1741 678 260 38 22 chr1 151614091 151614297 -45581135 - B3A SINE B2 -4 212 5 1 1741 2263 74 16 3 chr1 151614481 151614794 -45580638 + MTB LTR MaLR 84 400 0 1 1741 24 0 0 0 chr1 151614808 151614832 -45580600 + AT_rich Low_complexity Low_complexity 1 24 0 1 1741 450 312 34 34 chr1 151614967 151615113 -45580319 + RSINE1 SINE B4 9 154 -11 1 1741 294 29 0 0 chr1 151615118 151615153 -45580279 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1741 1183 226 51 14 chr1 151615176 151615468 -45579964 - Lx8 LINE L1 -988 6485 6183 1 1741 492 86 0 0 chr1 151615476 151615546 -45579886 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1741 1193 74 0 0 chr1 151615925 151616073 -45579359 + B1_Mus1 SINE Alu 1 148 0 1 1741 182 33 67 0 chr1 151616073 151616103 -45579329 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1741 182 171 0 24 chr1 151616108 151616150 -45579282 + (TATG)n Simple_repeat Simple_repeat 4 44 0 1 1741 374 194 28 0 chr1 151617591 151617663 -45577769 - MER89 LTR ERV1 -41 518 445 1 1741 334 274 37 28 chr1 151617736 151617845 -45577587 + RSINE1 SINE B4 16 125 -40 1 1741 427 255 52 149 chr1 151617856 151618050 -45577382 + B3 SINE B2 37 211 -5 1 1741 21 36 0 0 chr1 151618331 151618359 -45577073 + AT_rich Low_complexity Low_complexity 1 28 0 1 1741 252 86 0 0 chr1 151618387 151618422 -45577010 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1741 318 183 24 12 chr1 151618422 151618505 -45576927 - Lx3_Mus LINE L1 -21 6988 6905 1 1741 1229 68 62 22 chr1 151618505 151618684 -45576748 + B2_Mm2 SINE B2 5 190 -5 1 1741 248 157 19 56 chr1 151618902 151618956 -45576476 + L1_Rod LINE L1 5518 5569 -278 1 1741 267 286 38 25 chr1 151619182 151619261 -45576171 - MER5B DNA MER1_type -76 102 23 1 1741 441 299 21 141 chr1 151619767 151619958 -45575474 - MLT1F1 LTR MaLR -63 506 339 1 1741 245 319 79 56 chr1 151620038 151620164 -45575268 - MLT1F1 LTR MaLR -404 144 16 1 1741 3837 76 0 14 chr1 151620468 151620986 -45574446 + L1Md_F2 LINE L1 6067 6577 -5 1 1741 366 336 0 47 chr1 151622813 151622941 -45572491 + RSINE1 SINE B4 2 123 -42 1 1741 456 67 0 0 chr1 151622941 151623001 -45572431 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1741 423 0 0 0 chr1 151623268 151623315 -45572117 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1741 281 316 42 10 chr1 151623315 151623411 -45572021 - Lx8 LINE L1 -146 7327 7229 1 1741 272 418 101 29 chr1 151623530 151623640 -45571792 + MLT1H1 LTR MaLR 40 159 -396 1 1741 627 51 0 0 chr1 151623640 151623719 -45571713 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1741 272 418 101 29 chr1 151623719 151623953 -45571479 + MLT1H1 LTR MaLR 160 409 -146 1 1741 1208 47 0 0 chr1 151624063 151624211 -45571221 - B1_Mus1 SINE Alu 0 148 1 1 1741 3503 75 14 40 chr1 151624806 151625305 -45570127 - L1_Mus1 LINE L1 0 6567 6082 1 1741 4365 72 12 0 chr1 151625305 151626166 -45569266 + L1_Mus1 LINE L1 5224 6099 -468 1 1741 249 0 0 68 chr1 151626253 151626297 -45569135 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1741 6259 62 12 5 chr1 151626803 151627635 -45567797 - L1Md_F2 LINE L1 -818 5065 4228 1 1741 4147 51 0 0 chr1 151627638 151628148 -45567284 + L1Md_F2 LINE L1 5077 5586 -297 1 1741 7597 69 1 7 chr1 151628149 151629150 -45566282 + L1Md_F2 LINE L1 5588 6582 0 1 1741 708 214 52 7 chr1 151629195 151629216 -45566216 + ORR1C2 LTR MaLR 16 36 -348 1 1741 486 0 0 0 chr1 151629216 151629270 -45566162 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1741 708 175 401 8 chr1 151629270 151629519 -45565913 + ORR1C2 LTR MaLR 37 384 0 1 1741 3698 258 77 29 chr1 151629519 151630827 -45564605 + ORR1C2-int LTR MaLR 1 1370 0 1 1741 1470 205 44 98 chr1 151630827 151631233 -45564199 + ORR1C2 LTR MaLR 1 384 0 1 1741 6013 37 5 9 chr1 151631285 151632028 -45563404 + L1Md_F3 LINE L1 5837 6576 -8 1 1741 498 208 24 0 chr1 151632364 151632532 -45562900 + A-rich Low_complexity Low_complexity 3 174 0 2 1741 308 314 136 0 chr1 151632726 151632844 -45562588 + ID_B1 SINE B4 90 223 -1 2 1741 567 0 0 0 chr1 151632881 151632944 -45562488 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2 1741 222 267 0 0 chr1 151632944 151632989 -45562443 + polypurine Low_complexity Low_complexity 4 48 0 2 1741 23 0 0 0 chr1 151633693 151633716 -45561716 + AT_rich Low_complexity Low_complexity 1 23 0 2 1741 443 217 101 0 chr1 151633811 151633949 -45561483 - Lx9 LINE L1 -1 7643 7492 2 1741 314 323 54 23 chr1 151634733 151634882 -45560550 + B3A SINE B2 1 164 -52 2 1741 378 0 0 0 chr1 151634883 151634925 -45560507 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1741 240 35 0 0 chr1 151635493 151635522 -45559910 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1741 1086 140 0 0 chr1 151636471 151636650 -45558782 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1741 572 232 162 0 chr1 151636736 151636921 -45558511 + B3 SINE B2 1 215 -1 2 1741 1115 155 11 5 chr1 151637412 151637600 -45557832 + URR1A DNA MER1_type 38 226 0 2 1741 439 265 68 48 chr1 151637600 151637631 -45557801 - CYRA11_Mm Unknown Y-chromosome -448 169 135 2 1741 306 115 0 0 chr1 151637971 151638023 -45557409 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1741 2368 198 52 116 chr1 151638391 151638603 -45556829 + RMER20B LTR ERVK 14 204 -423 2 1741 465 19 0 0 chr1 151638603 151638657 -45556775 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1741 2368 198 52 116 chr1 151638657 151639100 -45556332 + RMER20B LTR ERVK 205 627 0 2 1741 516 289 15 41 chr1 151639279 151639474 -45555958 + B3A SINE B2 1 190 -8 2 1741 621 90 0 0 chr1 151639521 151639610 -45555822 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1741 334 257 0 0 chr1 151639800 151639870 -45555562 + MTD LTR MaLR 6 75 -346 2 1741 926 233 227 29 chr1 151639871 151640279 -45555153 + RMER1C Other Other 830 1318 -24 2 1741 358 318 71 60 chr1 151640279 151640463 -45554969 + MTD LTR MaLR 36 221 -198 2 1741 1781 287 31 109 chr1 151640463 151641602 -45553830 - RMER1C Other Other -468 874 29 2 1741 375 342 8 0 chr1 151641766 151641886 -45553546 - RMER1B Other Other -354 712 592 2 1741 274 325 34 50 chr1 151642501 151642686 -45552746 - MLT1B LTR MaLR -60 407 230 2 1741 249 202 33 22 chr1 151642884 151642975 -45552457 + CT-rich Low_complexity Low_complexity 5 96 0 2 1741 410 0 20 0 chr1 151643706 151643756 -45551676 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 2 1741 373 284 31 10 chr1 151645097 151645193 -45550239 + MLT1A1 LTR MaLR 16 113 -295 2 1741 303 175 28 28 chr1 151646015 151646121 -45549311 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 1741 1230 114 60 60 chr1 151646399 151646650 -45548782 + RMER1C Other Other 1092 1342 0 2 1741 330 271 75 14 chr1 151647225 151647371 -45548061 + RSINE1 SINE B4 4 158 -7 2 1741 22 0 0 0 chr1 151647866 151647888 -45547544 + AT_rich Low_complexity Low_complexity 1 22 0 2 1741 215 271 17 0 chr1 151648311 151648370 -45547062 + GA-rich Low_complexity Low_complexity 2 61 0 2 1741 3482 94 15 35 chr1 151648591 151649128 -45546304 + L1Md_F2 LINE L1 6055 6580 -2 2 1741 1064 142 25 2 chr1 151649160 151649359 -45546073 - URR1B DNA MER1_type 0 225 2 2 1741 21 36 0 0 chr1 151649778 151649806 -45545626 + AT_rich Low_complexity Low_complexity 1 28 0 2 1742 186 43 0 0 chr1 151651112 151651135 -45544297 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1742 555 16 0 0 chr1 151652447 151652511 -45542921 + (CATAA)n Simple_repeat Simple_repeat 2 65 0 2 1742 1423 219 56 144 chr1 151652920 151653604 -45541828 + RLTR18B LTR ERVK 1 527 -89 2 1742 777 76 0 0 chr1 151654542 151654647 -45540785 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 2 1742 1067 134 6 0 chr1 151654655 151654834 -45540598 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1742 666 190 90 48 chr1 151655490 151655678 -45539754 + B3A SINE B2 3 198 0 2 1742 21 0 0 0 chr1 151656683 151656704 -45538728 + AT_rich Low_complexity Low_complexity 1 21 0 2 1742 3047 68 2 5 chr1 151657628 151658025 -45537407 + MTA_Mm LTR MaLR 1 396 0 2 1742 7614 85 17 2 chr1 151658025 151659107 -45536325 + MTA_Mm-int LTR MaLR 1 1098 0 2 1742 2997 62 15 5 chr1 151659107 151659499 -45535933 + MTA_Mm LTR MaLR 1 396 0 2 1742 311 307 53 0 chr1 151659521 151659635 -45535797 - MLT1D LTR MaLR -83 422 303 2 1742 422 208 39 10 chr1 151659683 151659785 -45535647 + URR1B DNA MER1_type 78 182 -43 2 1742 399 253 217 6 chr1 151659915 151660090 -45535342 + B3 SINE B2 1 212 -4 2 1742 258 234 50 114 chr1 151661609 151661749 -45533683 + MT2B2 LTR ERVL 133 263 -321 2 1742 470 218 43 43 chr1 151661643 151661758 -45533674 + ID_B1 SINE B4 82 196 -28 2 1742 1624 229 33 52 chr1 151661758 151662181 -45533251 - MTD LTR MaLR 0 419 5 2 1742 658 316 6 0 chr1 151663082 151663155 -45532277 + ID SINE ID 8 81 -143 2 1742 289 388 0 0 chr1 151663155 151663271 -45532161 + PB1D10 SINE Alu 1 116 -1 2 1742 188 266 144 61 chr1 151663906 151664038 -45531394 + MIR SINE MIR 92 234 -28 2 1742 235 266 16 0 chr1 151664622 151664686 -45530746 + B4A SINE B4 1 65 -227 2 1742 729 305 29 0 chr1 151664824 151665034 -45530398 - ID_B1 SINE B4 -7 217 2 2 1742 408 159 0 0 chr1 151666803 151666866 -45528566 + ORR1A4 LTR MaLR 1 63 -266 2 1742 289 222 16 16 chr1 151667541 151667605 -45527827 + ORR1A4 LTR MaLR 256 319 -60 2 1742 5753 154 40 59 chr1 151668125 151669287 -45526145 - ORR1A4-int LTR MaLR -811 1152 12 2 1742 4028 44 2 0 chr1 151669287 151669768 -45525664 + LTRIS_Mm LTR ERV1 1 482 0 2 1742 5753 154 40 59 chr1 151669768 151669779 -45525653 - ORR1A4-int LTR MaLR -1952 11 1 2 1742 713 82 54 9 chr1 151669779 151669890 -45525542 - ORR1A4 LTR MaLR 0 394 279 2 1742 842 176 61 52 chr1 151669903 151670131 -45525301 - RLTR22_Mur LTR ERVK -4 1844 1542 2 1742 1993 124 19 22 chr1 151670224 151670433 -45524999 + ORR1A2 LTR MaLR 7 221 -106 2 1742 3724 138 95 144 chr1 151670433 151671410 -45524022 - RLTR13B3 LTR ERVK 0 929 1 2 1742 1993 124 19 22 chr1 151671410 151671514 -45523918 + ORR1A2 LTR MaLR 222 319 -8 2 1742 2185 137 142 9 chr1 151671679 151672135 -45523297 - RLTR22_Mur LTR ERVK -878 970 454 2 1742 883 182 0 35 chr1 151672140 151672311 -45523121 - ORR1A4 LTR MaLR -111 218 54 2 1742 324 381 165 16 chr1 151672331 151672574 -45522858 - LTR16A1 LTR ERVL -177 279 1 2 1742 920 189 53 0 chr1 151672679 151672869 -45522563 + ORR1A3-int LTR MaLR 63 262 -1701 2 1742 495 0 0 0 chr1 151672873 151672928 -45522504 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1742 3190 161 71 20 chr1 151672928 151673653 -45521779 + RLTR13C1 LTR ERVK 2 963 -20 2 1742 207 0 0 0 chr1 151673880 151673903 -45521529 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1742 369 95 0 0 chr1 151673903 151673965 -45521467 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1742 394 316 26 0 chr1 151674061 151674175 -45521257 + B1F SINE Alu 26 142 -7 2 1742 255 296 0 0 chr1 151674381 151674462 -45520970 - L1MC4a LINE L1 -372 7510 7430 2 1742 256 357 62 23 chr1 151675130 151675259 -45520173 + ORR1E LTR MaLR 3 136 -223 2 1742 226 250 27 27 chr1 151675444 151675518 -45519914 + ORR1E LTR MaLR 302 375 -4 2 1742 2600 161 45 33 chr1 151675884 151676373 -45519059 + RLTR16 LTR ERVK 6 500 -5 2 1742 492 294 101 63 chr1 151676401 151676608 -45518824 + B4A SINE B4 2 216 -76 2 1742 603 44 33 0 chr1 151677431 151677522 -45517910 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1742 1103 86 0 0 chr1 151677967 151678107 -45517325 + B1_Mus1 SINE Alu 2 141 -7 2 1742 21 0 0 0 chr1 151678109 151678130 -45517302 + AT_rich Low_complexity Low_complexity 1 21 0 2 1742 357 24 0 0 chr1 151678513 151678555 -45516877 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1742 405 0 0 0 chr1 151678555 151678599 -45516833 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1742 1142 82 81 12 chr1 151678609 151678782 -45516650 - L1Md_F2 LINE L1 -12 6570 6386 2 1742 234 92 44 44 chr1 151678958 151679026 -45516406 + A-rich Low_complexity Low_complexity 4 71 0 2 1742 589 240 147 5 chr1 151679317 151679501 -45515931 - B3 SINE B2 -5 211 2 2 1742 270 0 0 0 chr1 151679945 151679975 -45515457 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1742 405 0 0 0 chr1 151679975 151680019 -45515413 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1742 234 304 14 42 chr1 151680046 151680118 -45515314 + ID4_ SINE ID 14 83 0 2 1742 279 0 0 0 chr1 151681399 151681430 -45514002 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1742 198 0 0 0 chr1 151681515 151681537 -45513895 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1742 452 286 279 10 chr1 151682627 151682924 -45512508 + MTEa LTR MaLR 1 377 -2 2 1742 221 317 0 58 chr1 151683527 151683614 -45511818 - MIRb SINE MIR -156 112 31 2 1742 995 155 3 0 chr1 151684283 151684574 -45510858 + GA-rich Low_complexity Low_complexity 1 291 0 2 1742 190 322 76 8 chr1 151684785 151684904 -45510528 - MIRb SINE MIR -20 248 122 2 1742 1654 202 21 24 chr1 151684941 151685316 -45510116 + ORR1D1 LTR MaLR 1 374 0 2 1742 384 321 110 45 chr1 151685462 151685726 -45509706 + Lx8 LINE L1 7106 7386 -87 2 1742 37 52 0 0 chr1 151685743 151685801 -45509631 + AT_rich Low_complexity Low_complexity 1 58 0 2 1742 21 36 0 0 chr1 151686124 151686152 -45509280 + AT_rich Low_complexity Low_complexity 1 28 0 2 1742 477 323 32 16 chr1 151686258 151686447 -45508985 + B3A SINE B2 2 193 -5 2 1742 619 146 0 0 chr1 151688666 151688755 -45506677 + 5S rRNA rRNA 8 96 -25 2 1742 7300 5 0 0 chr1 151689752 151690559 -45504873 + L1Md_A LINE L1 5776 6582 0 2 1742 458 200 26 26 chr1 151690690 151690803 -45504629 + MTD LTR MaLR 8 120 -301 2 1742 386 38 0 19 chr1 151690810 151690863 -45504569 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2 1742 1217 90 6 0 chr1 151690863 151691040 -45504392 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1742 266 152 0 0 chr1 151691040 151691086 -45504346 + CT-rich Low_complexity Low_complexity 1 46 0 2 1742 1133 241 73 24 chr1 151691111 151691400 -45504032 + MTD LTR MaLR 109 411 -8 2 1742 21 36 0 0 chr1 151691444 151691472 -45503960 + AT_rich Low_complexity Low_complexity 1 28 0 2 1742 23 97 0 0 chr1 151691691 151691763 -45503669 + AT_rich Low_complexity Low_complexity 1 72 0 2 1742 389 230 28 83 chr1 151691840 151691949 -45503483 + B4A SINE B4 176 278 -14 3 1742 342 0 0 0 chr1 151692007 151692045 -45503387 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1742 195 296 36 53 chr1 151693020 151693120 -45502312 + MIRb SINE MIR 107 212 -56 3 1742 596 231 68 23 chr1 151693192 151693413 -45502019 - Lx9 LINE L1 -131 7513 7283 3 1742 265 175 74 12 chr1 151693421 151693502 -45501930 + Lx9 LINE L1 7552 7637 -7 3 1742 368 265 0 59 chr1 151694491 151694621 -45500811 + URR1A DNA MER1_type 1 120 -106 3 1742 194 217 0 14 chr1 151695173 151695243 -45500189 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1742 564 15 0 0 chr1 151695244 151695309 -45500123 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1742 477 0 0 0 chr1 151695309 151695361 -45500071 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1742 206 345 22 11 chr1 151696357 151696448 -45498984 - L4 LINE RTE -1689 340 249 3 1742 201 74 0 0 chr1 151696608 151696635 -45498797 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1742 246 226 19 0 chr1 151696960 151697013 -45498419 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1742 342 282 127 51 chr1 151697905 151698020 -45497412 + MTD LTR MaLR 18 141 -278 3 1742 1998 145 6 15 chr1 151698020 151698349 -45497083 - ORR1A2 LTR MaLR -1 326 1 3 1742 342 282 127 51 chr1 151698349 151698390 -45497042 + MTD LTR MaLR 142 186 -233 3 1742 826 203 166 0 chr1 151700471 151700658 -45494774 - URR1A DNA MER1_type -2 224 7 3 1742 24 0 0 0 chr1 151700914 151700938 -45494494 + AT_rich Low_complexity Low_complexity 1 24 0 3 1742 415 339 71 0 chr1 151701289 151701416 -45494016 - RSINE1 SINE B4 -16 149 14 3 1742 586 276 45 0 chr1 151701823 151701979 -45493453 + B3A SINE B2 1 163 -35 3 1742 23 0 0 0 chr1 151702643 151702666 -45492766 + AT_rich Low_complexity Low_complexity 1 23 0 3 1742 1062 83 7 0 chr1 151703305 151703450 -45491982 + B1_Mus1 SINE Alu 2 147 -1 3 1742 306 106 0 0 chr1 151704408 151704455 -45490977 + (TAG)n Simple_repeat Simple_repeat 1 47 0 3 1742 1261 111 16 0 chr1 151705773 151705962 -45489470 - B2_Mm1t SINE B2 -1 192 1 3 1742 785 189 193 17 chr1 151705970 151706171 -45489261 - B3 SINE B2 -1 215 1 3 1742 231 293 0 0 chr1 151706313 151706395 -45489037 + L1MC3 LINE L1 5891 5972 -1813 3 1742 215 250 0 0 chr1 151707143 151707222 -45488210 + T-rich Low_complexity Low_complexity 1 79 0 3 1742 441 0 0 0 chr1 151707224 151707273 -45488159 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1742 300 53 0 0 chr1 151707426 151707464 -45487968 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1742 289 252 65 125 chr1 151708276 151708444 -45486988 + MT2B LTR ERVL 126 283 -318 3 1742 222 118 0 0 chr1 151709806 151709840 -45485592 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1742 256 297 0 39 chr1 151710528 151710539 -45484893 - tRNA-Ala-GCG tRNA tRNA 0 75 2 3 1742 316 246 0 15 chr1 151710539 151710605 -45484827 - ID4 SINE ID -11 72 8 3 1742 23 92 0 0 chr1 151711101 151711166 -45484266 + AT_rich Low_complexity Low_complexity 1 65 0 3 1742 264 320 62 0 chr1 151711337 151711434 -45483998 - ID_B1 SINE B4 -120 104 2 3 1742 282 116 0 0 chr1 151712187 151712230 -45483202 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1742 251 365 63 15 chr1 151712909 151713115 -45482317 + MIR SINE MIR 34 249 -13 3 1742 187 321 102 19 chr1 151713629 151713737 -45481695 + L2b LINE L2 2945 3061 -314 3 1742 642 296 65 20 chr1 151714974 151715174 -45480258 - B3 SINE B2 -7 209 1 3 1742 265 271 0 28 chr1 151715701 151715773 -45479659 + ID_B1 SINE B4 76 145 -79 3 1742 326 247 221 12 chr1 151715712 151715798 -45479634 + PB1D10 SINE Alu 6 109 -8 3 1742 602 26 13 0 chr1 151716172 151716248 -45479184 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 3 1742 869 74 123 0 chr1 151717489 151717611 -45477821 + B1_Mus1 SINE Alu 1 137 -11 3 1742 390 57 0 0 chr1 151717613 151717666 -45477766 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 1742 22 0 0 0 chr1 151717877 151717899 -45477533 + AT_rich Low_complexity Low_complexity 1 22 0 3 1742 23 54 0 0 chr1 151719075 151719112 -45476320 + AT_rich Low_complexity Low_complexity 1 37 0 3 1742 595 315 34 7 chr1 151719112 151719292 -45476140 - B3A SINE B2 -13 203 17 3 1742 200 116 0 65 chr1 151720341 151720387 -45475045 + CT-rich Low_complexity Low_complexity 2 44 0 3 1742 485 278 118 22 chr1 151721141 151721277 -45474155 - B1_Mur2 SINE Alu 0 149 1 3 1742 289 364 93 44 chr1 151721277 151721345 -45474087 - ID_B1 SINE B4 -2 222 9 3 1742 269 314 35 0 chr1 151721279 151721365 -45474067 - PB1D9 SINE Alu -1 119 31 3 1742 23 33 0 0 chr1 151721477 151721507 -45473925 + AT_rich Low_complexity Low_complexity 1 30 0 3 1742 306 275 29 0 chr1 151721956 151722025 -45473407 + ID4 SINE ID 4 74 -9 3 1742 348 24 0 0 chr1 151725732 151725773 -45469659 + (CATAT)n Simple_repeat Simple_repeat 5 45 0 3 1742 481 134 54 0 chr1 151725944 151726093 -45469339 + (TA)n Simple_repeat Simple_repeat 1 157 0 3 1742 633 240 0 8 chr1 151726278 151726408 -45469024 - B1_Mus2 SINE Alu -10 137 9 3 1742 28 0 0 0 chr1 151727081 151727109 -45468323 + AT_rich Low_complexity Low_complexity 1 28 0 3 1742 870 301 50 25 chr1 151727511 151727753 -45467679 + Lx5 LINE L1 6794 7041 -9 3 1742 185 333 0 0 chr1 151728180 151728234 -45467198 - MIRb SINE MIR -195 73 20 3 1742 617 306 43 62 chr1 151728858 151729116 -45466316 - MLT2D LTR ERVL -7 407 155 3 1742 293 342 35 2 chr1 151729116 151729240 -45466192 - L2b LINE L2 -50 3376 3237 3 1742 318 26 0 0 chr1 151730486 151730525 -45464907 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1742 342 45 0 0 chr1 151730866 151730910 -45464522 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1742 284 0 28 0 chr1 151730910 151730945 -45464487 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1742 330 123 0 0 chr1 151731159 151731216 -45464216 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 1742 23 0 0 0 chr1 151731422 151731445 -45463987 + AT_rich Low_complexity Low_complexity 1 23 0 3 1742 1020 102 12 12 chr1 151731446 151731614 -45463818 - L1_Mus3 LINE L1 0 6638 6471 3 1742 865 177 61 42 chr1 151731787 151731999 -45463433 + B3 SINE B2 1 216 0 3 1742 255 93 0 0 chr1 151732090 151732133 -45463299 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1742 488 336 48 12 chr1 151732216 151732466 -45462966 + L1MC1 LINE L1 5954 6212 -121 3 1742 754 284 179 133 chr1 151732480 151732910 -45462522 + MLT2B2 LTR ERVL 1 450 -65 3 1742 387 0 0 0 chr1 151732910 151732953 -45462479 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1742 488 359 64 44 chr1 151732953 151732997 -45462435 + MLT2B2 LTR ERVL 501 545 -9 3 1742 26 0 0 0 chr1 151733640 151733666 -45461766 + AT_rich Low_complexity Low_complexity 1 26 0 3 1742 917 275 84 22 chr1 151733746 151734069 -45461363 + ORR1D2 LTR MaLR 1 343 -27 3 1742 1158 285 54 33 chr1 151734998 151735426 -45460006 + Lx8 LINE L1 6972 7408 -65 3 1742 538 100 20 0 chr1 151735461 151735561 -45459871 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 1742 3326 224 69 18 chr1 151735693 151736158 -45459274 + RMER1A Other Other 150 627 -403 3 1742 279 0 0 0 chr1 151736158 151736189 -45459243 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1742 3326 224 69 18 chr1 151736189 151736547 -45458885 + RMER1A Other Other 628 1015 -15 3 1742 186 43 0 0 chr1 151737759 151737782 -45457650 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 3 1742 2404 173 5 10 chr1 151740149 151740564 -45454868 - MTC LTR MaLR -8 413 1 3 1742 218 295 21 83 chr1 151740824 151740920 -45454512 + BC1_Mm scRNA scRNA 15 104 -48 3 1742 645 189 57 0 chr1 151741499 151741605 -45453827 + URR1B DNA MER1_type 1 112 -113 3 1742 548 240 0 0 chr1 151741597 151741701 -45453731 - B2_Mm2 SINE B2 -91 104 1 3 1742 823 103 8 8 chr1 151741701 151741828 -45453604 + URR1B DNA MER1_type 94 220 -5 3 1742 183 156 0 0 chr1 151743052 151743084 -45452348 + (CAA)n Simple_repeat Simple_repeat 1 32 0 3 1742 203 333 27 0 chr1 151743594 151743669 -45451763 + L2a LINE L2 3274 3350 -76 3 1742 327 296 77 18 chr1 151743912 151744132 -45451300 + L1ME2z LINE L1 6204 6436 -8 3 1742 346 312 22 106 chr1 151744297 151744476 -45450956 - RSINE1 SINE B4 0 165 2 3 1742 473 185 44 53 chr1 151744476 151744590 -45450842 - PB1D10 SINE Alu 0 117 5 3 1742 211 204 0 85 chr1 151746226 151746285 -45449147 - MIR SINE MIR -11 251 198 3 1742 21 0 0 0 chr1 151746350 151746371 -45449061 + AT_rich Low_complexity Low_complexity 1 21 0 3 1742 414 0 0 0 chr1 151746766 151746812 -45448620 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1742 306 267 40 0 chr1 151747994 151748069 -45447363 + ID4_ SINE ID 5 82 -1 3 1742 759 268 24 14 chr1 151748415 151748627 -45446805 + B3 SINE B2 2 215 -1 3 1742 533 254 22 7 chr1 151748669 151748808 -45446624 + B1_Mur1 SINE Alu 2 142 -7 3 1742 22 35 0 0 chr1 151748808 151748837 -45446595 + AT_rich Low_complexity Low_complexity 1 29 0 3 1742 242 346 86 37 chr1 151750309 151750471 -45444961 + L2c LINE L2 3182 3351 -36 3 1742 369 0 0 0 chr1 151752696 151752737 -45442695 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 3 1742 630 293 15 68 chr1 151752737 151752942 -45442490 - B3 SINE B2 -16 200 7 3 1742 21 0 0 0 chr1 151753263 151753284 -45442148 + AT_rich Low_complexity Low_complexity 1 21 0 3 1742 30 27 0 0 chr1 151753721 151753758 -45441674 + AT_rich Low_complexity Low_complexity 1 37 0 3 1742 26 30 0 0 chr1 151754178 151754211 -45441221 + AT_rich Low_complexity Low_complexity 1 33 0 3 1742 1219 34 0 20 chr1 151754387 151754537 -45440895 + B1_Mus1 SINE Alu 2 148 0 3 1742 309 258 164 15 chr1 151754722 151754856 -45440576 + HAL1-3A_ME LINE L1 2286 2439 -419 3 1742 1795 51 0 8 chr1 151755788 151756024 -45439408 - L1Md_F3 LINE L1 0 6584 6351 4 1742 534 340 31 51 chr1 151756810 151757067 -45438365 + B4A SINE B4 4 255 -37 4 1742 828 214 73 76 chr1 151757895 151758140 -45437292 + ID_B1 SINE B4 2 223 -1 4 1742 426 295 23 54 chr1 151758661 151758790 -45436642 + ID_B1 SINE B4 79 203 -21 4 1742 387 0 0 0 chr1 151759598 151759641 -45435791 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1742 276 357 84 62 chr1 151760591 151760770 -45434662 + B4A SINE B4 6 188 -104 4 1742 215 271 34 45 chr1 151760783 151760872 -45434560 + RSINE1 SINE B4 78 165 0 4 1742 270 0 0 0 chr1 151760892 151760922 -45434510 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1742 4477 99 2 16 chr1 151761008 151761652 -45433780 + L1Md_F2 LINE L1 5948 6582 0 4 1742 918 243 115 0 chr1 151761974 151762200 -45433232 - MTD LTR MaLR -1 418 167 4 1742 352 345 38 41 chr1 151762664 151762957 -45432475 + B4A SINE B4 1 292 0 4 1742 467 160 49 78 chr1 151764037 151764139 -45431293 + PB1D10 SINE Alu 18 116 -1 4 1742 488 243 37 0 chr1 151764910 151765017 -45430415 + B1F1 SINE Alu 1 111 -38 4 1742 402 21 0 0 chr1 151765720 151765767 -45429665 + (TGG)n Simple_repeat Simple_repeat 3 49 0 4 1742 415 248 292 7 chr1 151765980 151766134 -45429298 + B3A SINE B2 1 198 0 4 1742 230 167 0 16 chr1 151767940 151768001 -45427431 + CT-rich Low_complexity Low_complexity 1 60 0 4 1742 255 179 0 35 chr1 151768006 151768064 -45427368 - B1_Mur2 SINE Alu -5 144 89 4 1742 750 305 113 54 chr1 151768095 151768501 -45426931 + MER21B LTR ERV1 426 855 -8 4 1742 782 57 24 16 chr1 151769944 151770070 -45425362 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 4 1742 252 143 0 41 chr1 151770072 151770086 -45425346 + polypurine Low_complexity Low_complexity 3 16 0 4 1742 1320 73 0 0 chr1 151770086 151770263 -45425169 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 4 1742 252 143 0 41 chr1 151770263 151770321 -45425111 + GA-rich Low_complexity Low_complexity 17 72 0 4 1742 545 253 224 0 chr1 151770441 151770611 -45424821 + B3 SINE B2 3 210 -6 4 1742 28 0 0 0 chr1 151770619 151770647 -45424785 + AT_rich Low_complexity Low_complexity 1 28 0 4 1742 270 0 0 0 chr1 151771088 151771118 -45424314 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1742 180 0 0 0 chr1 151771151 151771171 -45424261 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1742 351 0 0 0 chr1 151771204 151771243 -45424189 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1742 782 301 69 9 chr1 151771267 151771689 -45423743 - L1MA4 LINE L1 -364 5936 5490 4 1742 369 0 0 0 chr1 151771744 151771785 -45423647 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1742 213 94 0 0 chr1 151771785 151771816 -45423616 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1742 862 310 18 58 chr1 151771854 151772128 -45423304 - B4A SINE B4 -20 272 10 4 1742 369 0 0 0 chr1 151772249 151772290 -45423142 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1742 1829 260 94 71 chr1 151772371 151773141 -45422291 + L1MC LINE L1 2271 3085 -3061 4 1742 1027 76 28 0 chr1 151773141 151773285 -45422147 + B1_Mus1 SINE Alu 1 148 0 4 1742 1829 260 94 71 chr1 151773285 151773468 -45421964 + L1MC LINE L1 3086 3219 -2927 4 1742 705 241 7 0 chr1 151773468 151773613 -45421819 + B1_Mur2 SINE Alu 3 148 -1 4 1742 1829 260 94 71 chr1 151773613 151774132 -45421300 + L1MC LINE L1 3220 3778 -2368 4 1742 302 238 11 40 chr1 151774689 151774864 -45420568 + GA-rich Low_complexity Low_complexity 2 171 0 4 1742 630 143 0 0 chr1 151774896 151775001 -45420431 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 4 1742 713 0 0 40 chr1 151775211 151775312 -45420120 + (TTC)n Simple_repeat Simple_repeat 3 99 0 4 1742 389 53 0 18 chr1 151775529 151775586 -45419846 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1742 719 209 7 7 chr1 151775598 151775738 -45419694 - B3A SINE B2 -57 141 2 4 1742 243 329 58 12 chr1 151777423 151777509 -45417923 + B1F SINE Alu 28 117 -32 4 1742 1047 96 0 0 chr1 151777513 151777733 -45417699 + (GAAA)n Simple_repeat Simple_repeat 1 220 0 4 1742 1651 174 49 12 chr1 151777882 151778208 -45417224 - RMER15 LTR ERVL 0 575 238 4 1742 520 182 0 39 chr1 151778208 151778311 -45417121 - RMER15 LTR ERVL -476 99 1 4 1742 628 244 54 11 chr1 151778617 151778803 -45416629 + B3A SINE B2 5 198 0 4 1742 331 267 46 106 chr1 151779002 151779153 -45416279 + MLT2B2 LTR ERVL 111 252 -263 4 1742 836 219 54 21 chr1 151779320 151779529 -45415903 + MTE2a LTR MaLR 194 419 0 4 1742 322 356 17 0 chr1 151779529 151779643 -45415789 + MLT2B2 LTR ERVL 385 500 -67 4 1742 243 0 0 0 chr1 151779722 151779749 -45415683 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1742 522 294 6 6 chr1 151780201 151780382 -45415050 + B3A SINE B2 1 181 -17 4 1742 769 257 6 18 chr1 151780700 151780870 -45414562 + Lx8 LINE L1 6571 6738 -735 4 1742 759 52 0 0 chr1 151780891 151780987 -45414445 + (TTTC)n Simple_repeat Simple_repeat 4 99 0 4 1742 519 17 0 0 chr1 151780987 151781046 -45414386 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 4 217 9115 66 0 5 chr1 151781062 151783001 -45412431 - L1Md_F2 LINE L1 -20 6562 4633 4 1743 1242 283 45 2 chr1 151782999 151783344 -45412088 + Lx8 LINE L1 6753 7107 -366 4 1743 2629 173 17 54 chr1 151783344 151783918 -45411514 + RLTR31_Mur LTR ERVK 1 553 0 4 1743 1242 283 45 2 chr1 151783918 151783972 -45411460 + Lx8 LINE L1 7108 7168 -305 4 1743 278 354 61 0 chr1 151783972 151784071 -45411361 - ID_B1 SINE B4 -39 185 81 4 1743 354 335 63 25 chr1 151784147 151784306 -45411126 - RSINE1 SINE B4 0 165 1 4 1743 772 186 7 14 chr1 151784340 151784487 -45410945 - B1_Mur4 SINE Alu -3 147 2 4 1743 262 282 64 0 chr1 151784622 151784700 -45410732 + PB1D10 SINE Alu 3 85 -32 4 1743 297 327 78 17 chr1 151784841 151784956 -45410476 + B1F SINE Alu 1 122 -27 4 1743 440 323 38 0 chr1 151784997 151785155 -45410277 + MTD LTR MaLR 253 416 -3 4 1743 750 286 4 34 chr1 151785379 151785618 -45409814 + Lx7 LINE L1 7070 7301 -395 4 1743 180 0 0 0 chr1 151785624 151785644 -45409788 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1743 194 143 0 51 chr1 151785687 151785746 -45409686 + T-rich Low_complexity Low_complexity 4 59 0 4 1743 216 354 98 36 chr1 151787097 151787344 -45408088 + L2a LINE L2 3109 3424 -2 4 1743 462 300 63 14 chr1 151788179 151788321 -45407111 - MTE2a LTR MaLR -15 364 216 4 1743 538 250 116 14 chr1 151788322 151788468 -45406964 + ID_B1 SINE B4 64 224 0 4 1743 22 35 0 0 chr1 151788527 151788556 -45406876 + AT_rich Low_complexity Low_complexity 1 29 0 4 1743 327 337 57 57 chr1 151789175 151789367 -45406065 + L1M4b LINE L1 1064 1255 -5649 4 1743 603 259 6 19 chr1 151789602 151789763 -45405669 + RSINE1 SINE B4 4 162 -3 4 1743 333 68 0 0 chr1 151789763 151789807 -45405625 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 1743 421 250 112 20 chr1 151789891 151790185 -45405247 + L1M4b LINE L1 1905 2225 -5109 4 1743 360 132 44 0 chr1 151790320 151790388 -45405044 + L1M4b LINE L1 2717 2787 -4547 4 1743 261 0 0 0 chr1 151790676 151790705 -45404727 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1743 363 289 41 0 chr1 151790842 151790939 -45404493 + PB1D10 SINE Alu 1 101 -16 4 1743 1067 268 88 27 chr1 151790942 151791318 -45404114 + Lx8 LINE L1 6343 6741 -732 4 1743 221 146 18 35 chr1 151791326 151791383 -45404049 + T-rich Low_complexity Low_complexity 2 57 0 4 1743 252 167 50 50 chr1 151791385 151791486 -45403946 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 4 1743 960 311 73 19 chr1 151791493 151791975 -45403457 + Lx8 LINE L1 6776 7283 -190 4 1743 5433 89 9 81 chr1 151792012 151792896 -45402536 + L1Md_F2 LINE L1 5763 6582 0 4 1743 342 254 114 0 chr1 151793219 151793333 -45402099 + L1MC4a LINE L1 7706 7832 -50 4 1743 592 194 18 9 chr1 151793390 151793499 -45401933 + PB1D9 SINE Alu 5 114 -6 4 1743 304 226 103 35 chr1 151793956 151794043 -45401389 - L1MEf LINE L1 -4111 2089 1997 4 1743 774 193 20 7 chr1 151795051 151795197 -45400235 + B1_Mur1 SINE Alu 2 149 0 4 1743 692 212 16 53 chr1 151796169 151796358 -45399074 - Lx6 LINE L1 -26 7434 7253 4 1743 628 193 123 7 chr1 151796652 151796798 -45398634 + RSINE1 SINE B4 3 165 0 4 1743 243 72 33 67 chr1 151796803 151796863 -45398569 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 4 1743 203 204 23 0 chr1 151797036 151797080 -45398352 + GA-rich Low_complexity Low_complexity 2 46 0 4 1743 400 321 60 52 chr1 151797099 151797332 -45398100 - MLT1B LTR MaLR -63 327 93 4 1743 191 36 36 0 chr1 151797635 151797663 -45397769 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 4 1743 256 314 41 55 chr1 151798725 151798870 -45396562 - Charlie4a DNA MER1_type 0 508 366 4 1743 513 0 0 0 chr1 151799065 151799122 -45396310 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1743 222 186 47 0 chr1 151799257 151799300 -45396132 + GA-rich Low_complexity Low_complexity 4 48 0 4 1743 776 171 0 12 chr1 151799659 151799819 -45395613 + GA-rich Low_complexity Low_complexity 2 159 0 4 1743 28 0 0 0 chr1 151800166 151800194 -45395238 + AT_rich Low_complexity Low_complexity 1 28 0 4 1743 905 107 7 0 chr1 151800694 151800834 -45394598 + (TC)n Simple_repeat Simple_repeat 1 141 0 4 1743 195 367 68 0 chr1 151801297 151801444 -45393988 + L2 LINE L2 1907 2063 -1356 4 1743 220 344 31 51 chr1 151801937 151802035 -45393397 - PB1 SINE Alu -18 109 14 4 1743 329 286 22 50 chr1 151803712 151803858 -45391574 - PB1D10 SINE Alu 0 149 13 4 1743 351 0 0 0 chr1 151804480 151804519 -45390913 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1743 317 328 8 33 chr1 151805007 151805127 -45390305 - Charlie1a DNA MER1_type -24 1431 1315 4 1743 26 30 0 0 chr1 151806090 151806123 -45389309 + AT_rich Low_complexity Low_complexity 1 33 0 4 1743 194 62 31 0 chr1 151806650 151806682 -45388750 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1743 31 26 0 0 chr1 151806920 151806958 -45388474 + AT_rich Low_complexity Low_complexity 1 38 0 4 1743 190 267 60 100 chr1 151807032 151807132 -45388300 + MIRm SINE MIR 89 184 -92 4 1743 253 0 26 26 chr1 151807330 151807368 -45388064 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1743 1074 51 51 0 chr1 151807368 151807506 -45387926 - B1_Mus2 SINE Alu -1 146 2 4 1743 609 100 0 0 chr1 151808647 151808737 -45386695 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1743 432 0 0 0 chr1 151808737 151808784 -45386648 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1743 252 333 82 10 chr1 151809149 151809246 -45386186 + PB1D10 SINE Alu 4 107 -10 5 1743 788 283 68 20 chr1 151809433 151809682 -45385750 - MTD LTR MaLR -14 405 145 5 1743 403 285 48 16 chr1 151809637 151809762 -45385670 - ID_B1 SINE B4 -12 212 84 5 1743 444 272 43 29 chr1 151810681 151810821 -45384611 + B1_Mur1 SINE Alu 3 144 -5 5 1743 255 31 0 0 chr1 151810854 151810886 -45384546 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1743 423 331 53 46 chr1 151810897 151810927 -45384505 + RSINE1 SINE B4 1 36 -129 5 1743 309 26 0 0 chr1 151810927 151810965 -45384467 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1743 423 331 53 46 chr1 151810965 151811086 -45384346 + RSINE1 SINE B4 37 153 -12 5 1743 543 354 60 5 chr1 151811220 151811419 -45384013 + B4A SINE B4 5 214 -78 5 1743 252 0 0 0 chr1 151811419 151811447 -45383985 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 5 1743 395 284 78 50 chr1 151811453 151811594 -45383838 + B3A SINE B2 1 145 -53 5 1743 208 182 23 0 chr1 151811690 151811734 -45383698 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 5 1743 261 0 0 0 chr1 151811753 151811782 -45383650 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1743 393 260 86 40 chr1 151811876 151812028 -45383404 + MLT2B2 LTR ERVL 1 159 -356 5 1743 450 0 0 0 chr1 151812067 151812117 -45383315 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1743 221 343 157 0 chr1 151812218 151812320 -45383112 - L2b LINE L2 -214 3161 3044 5 1743 281 311 0 0 chr1 151812387 151812490 -45382942 + G-rich Low_complexity Low_complexity 1 103 0 5 1743 419 279 48 0 chr1 151813140 151813244 -45382188 - PB1D10 SINE Alu -6 111 3 5 1743 451 315 39 86 chr1 151813671 151813928 -45381504 + B4A SINE B4 12 256 -36 5 1743 594 285 60 70 chr1 151814422 151814622 -45380810 + B3A SINE B2 1 198 0 5 1743 1785 136 12 64 chr1 151815424 151815753 -45379679 + ORR1A4 LTR MaLR 18 329 0 5 1743 240 35 0 0 chr1 151815813 151815842 -45379590 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1743 303 269 303 32 chr1 151815887 151816071 -45379361 - MTD LTR MaLR -183 236 3 5 1743 374 256 47 0 chr1 151816835 151816921 -45378511 + PB1D9 SINE Alu 31 120 0 5 1743 236 149 21 0 chr1 151816934 151816981 -45378451 + GA-rich Low_complexity Low_complexity 3 50 0 5 1743 272 27 0 26 chr1 151817073 151817111 -45378321 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 5 1743 414 0 0 0 chr1 151817156 151817202 -45378230 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1743 2009 174 62 17 chr1 151817270 151817691 -45377741 + RMER10A LTR ERVL 1 440 -2 5 1743 891 337 24 72 chr1 151817725 151818102 -45377330 + MTEa LTR MaLR 1 359 -20 5 1743 2140 58 14 0 chr1 151818142 151818420 -45377012 - L1Md_F2 LINE L1 -1 6581 6300 5 1743 856 260 5 0 chr1 151818657 151818865 -45376567 - B3 SINE B2 -6 210 2 5 1743 484 183 7 7 chr1 151819010 151819143 -45376289 + GA-rich Low_complexity Low_complexity 2 135 0 5 1743 3064 145 21 8 chr1 151819143 151819664 -45375768 - RLTR11A LTR ERVK 0 528 1 5 1743 490 298 61 7 chr1 151819922 151820063 -45375369 + ID_B1 SINE B4 74 224 0 5 1743 229 123 48 36 chr1 151820212 151820296 -45375136 + A-rich Low_complexity Low_complexity 3 87 0 5 1743 252 178 22 0 chr1 151820884 151820929 -45374503 - ID4 SINE ID -16 67 22 5 1743 180 0 0 0 chr1 151821001 151821021 -45374411 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1743 432 0 0 0 chr1 151821109 151821157 -45374275 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1743 976 114 0 0 chr1 151821376 151821507 -45373925 + B1_Mus1 SINE Alu 5 135 -13 5 1743 1386 46 0 0 chr1 151821509 151821726 -45373706 + (GAAA)n Simple_repeat Simple_repeat 1 217 0 5 1743 599 163 8 0 chr1 151821726 151821849 -45373583 + GA-rich Low_complexity Low_complexity 1 124 0 5 1743 433 295 0 9 chr1 151822456 151822569 -45372863 + PB1D7 SINE Alu 9 120 0 5 1743 581 314 135 39 chr1 151823339 151823771 -45371661 + MLT2B2 LTR ERVL 2 475 -40 5 1743 1019 92 33 0 chr1 151823771 151824109 -45371323 + (TCTA)n Simple_repeat Simple_repeat 1 349 0 5 1743 581 308 57 60 chr1 151824109 151824138 -45371294 + MLT2B2 LTR ERVL 476 505 -10 5 1743 404 327 36 0 chr1 151824423 151824533 -45370899 + B3 SINE B2 69 182 -34 5 1743 957 172 0 0 chr1 151824533 151824713 -45370719 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1743 6115 58 1 6 chr1 151825442 151825464 -45369968 + L1Md_F2 LINE L1 5068 5085 -798 5 1743 4834 82 1 11 chr1 151825464 151826126 -45369306 - L1Md_F2 LINE L1 -2 6580 5925 5 1743 6115 45 1 4 chr1 151826126 151826976 -45368456 + L1Md_F2 LINE L1 5086 5936 -646 5 1743 23 33 0 0 chr1 151827650 151827680 -45367752 + AT_rich Low_complexity Low_complexity 1 30 0 5 1743 3638 141 18 68 chr1 151827680 151828113 -45367319 - Lx4A LINE L1 -9 7049 6655 5 1743 1916 140 39 51 chr1 151828113 151828444 -45366988 + ORR1A2 LTR MaLR 1 327 0 5 1743 3638 141 18 68 chr1 151828444 151828674 -45366758 - Lx4A LINE L1 -404 6654 6419 5 1743 2091 97 23 0 chr1 151828674 151828982 -45366450 - IAPEY2_LTR LTR ERVK -3 354 40 5 1743 1834 145 17 0 chr1 151828986 151829282 -45366150 - Lx4A LINE L1 -629 6429 6129 5 1743 730 191 191 0 chr1 151829983 151830161 -45365271 + B3 SINE B2 2 213 -3 5 1743 1143 221 91 61 chr1 151831051 151831412 -45364020 - ORR1D1 LTR MaLR 0 374 3 5 1743 246 277 120 48 chr1 151832140 151832153 -45363279 + ID_B1 SINE B4 74 129 -95 5 1743 371 299 31 0 chr1 151832153 151832250 -45363182 + PB1D7 SINE Alu 9 108 -12 5 1743 246 277 120 48 chr1 151832250 151832265 -45363167 + ID_B1 SINE B4 130 207 -17 5 1743 561 348 14 0 chr1 151832505 151832646 -45362786 - RSINE1 SINE B4 -20 145 3 5 1743 303 273 0 38 chr1 151832647 151832727 -45362705 + ID_B1 SINE B4 141 217 -7 5 1743 269 232 0 0 chr1 151832678 151832734 -45362698 + PB1D7 SINE Alu 65 120 0 5 1743 278 80 20 0 chr1 151833254 151833304 -45362128 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 5 1743 599 268 7 7 chr1 151833305 151833444 -45361988 - ID_B1 SINE B4 0 224 86 5 1743 385 289 149 0 chr1 151833517 151833631 -45361801 + B3A SINE B2 1 131 -67 5 1743 1889 198 40 0 chr1 151833631 151833984 -45361448 - ORR1B2 LTR MaLR 0 367 1 5 1743 391 250 0 42 chr1 151833984 151834080 -45361352 + B3 SINE B2 125 216 0 5 1743 3139 61 5 5 chr1 151834228 151834624 -45360808 + MTA_Mm LTR MaLR 1 396 0 5 1743 464 339 15 8 chr1 151834772 151834903 -45360529 + ID_B1 SINE B4 86 217 -7 5 1743 26 0 0 0 chr1 151835953 151835979 -45359453 + AT_rich Low_complexity Low_complexity 1 26 0 5 1743 4243 110 3 22 chr1 151835980 151836621 -45358811 - Lx LINE L1 -3 6651 6023 5 1743 419 248 80 27 chr1 151837509 151837621 -45357811 + B1F SINE Alu 19 136 -13 5 1743 423 0 0 0 chr1 151837623 151837670 -45357762 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 1743 441 256 0 22 chr1 151837739 151837831 -45357601 + B3A SINE B2 44 133 -65 5 1743 668 115 0 9 chr1 151837871 151837976 -45357456 - URR1B DNA MER1_type 0 225 122 5 1743 4779 110 34 65 chr1 151837976 151838809 -45356623 - MTA_Mm-int LTR MaLR -291 807 1 5 1743 2933 52 8 5 chr1 151838809 151839196 -45356236 - MTA_Mm LTR MaLR 0 396 9 5 1743 408 262 42 109 chr1 151839199 151839266 -45356166 + RMER15 LTR ERVL 389 446 -129 5 1743 2830 9 0 55 chr1 151839266 151839612 -45355820 - IAPLTR2b LTR ERVK 0 327 1 5 1743 408 262 42 109 chr1 151839612 151839737 -45355695 + RMER15 LTR ERVL 447 568 -7 5 1743 325 259 60 22 chr1 151839826 151839960 -45355472 + L1MB7 LINE L1 5228 5366 -780 5 1743 206 204 0 39 chr1 151839960 151840011 -45355421 + (CATATA)n Simple_repeat Simple_repeat 1 49 0 5 1743 622 301 74 10 chr1 151840011 151840323 -45355109 + L1MB7 LINE L1 5360 5691 -487 5 1743 298 311 71 19 chr1 151840409 151840563 -45354869 + L1MB7 LINE L1 5835 5996 -188 5 1743 537 108 0 11 chr1 151840564 151840658 -45354774 - L1_Mus4 LINE L1 -5 6631 6539 5 1743 1522 128 4 4 chr1 151840658 151840885 -45354547 + ORR1A3 LTR MaLR 92 318 -8 5 1743 2289 153 33 35 chr1 151841304 151841749 -45353683 + RMER17B LTR ERVK 15 441 -465 5 1743 7802 73 1 0 chr1 151841750 151843480 -45351952 - L1_Mus1 LINE L1 -112 6455 4725 5 1743 3870 142 17 9 chr1 151843480 151844118 -45351314 + RMER17B LTR ERVK 316 958 0 5 1743 223 167 0 0 chr1 151844131 151844173 -45351259 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1743 3785 156 14 10 chr1 151844339 151845059 -45350373 + L1Md_F3 LINE L1 483 1205 -5519 5 1743 33231 44 0 10 chr1 151845033 151849524 -45345908 + L1Md_F3 LINE L1 1138 5586 -297 5 1743 8166 40 2 3 chr1 151849524 151850523 -45344909 + L1Md_F3 LINE L1 5587 6584 0 5 1743 597 28 0 0 chr1 151850876 151850947 -45344485 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1743 315 361 29 36 chr1 151851353 151851491 -45343941 + ID_B1 SINE B4 84 220 -4 5 1743 322 320 19 37 chr1 151851554 151851661 -45343771 - L1ME2 LINE L1 -128 6036 5932 5 1743 226 256 25 13 chr1 151851863 151851942 -45343490 - L1ME2 LINE L1 -486 5678 5599 5 1743 303 319 21 0 chr1 151852002 151852096 -45343336 + B4 SINE B4 71 166 -126 5 1743 460 239 23 0 chr1 151852024 151852112 -45343320 + B1F SINE Alu 8 97 -52 5 1743 348 77 0 0 chr1 151852240 151852292 -45343140 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 5 1743 530 310 93 31 chr1 151852294 151852487 -45342945 - ID_B1 SINE B4 -18 206 2 5 1743 254 320 41 10 chr1 151852488 151852684 -45342748 - L1ME2 LINE L1 -681 5483 5282 5 1743 1204 90 0 6 chr1 151853230 151853397 -45342035 + B2_Mm2 SINE B2 2 167 -28 5 1743 344 239 262 40 chr1 151853499 151853747 -45341685 - L1ME2 LINE L1 -1575 4571 4269 5 1743 244 304 279 0 chr1 151853748 151853827 -45341605 + PB1D10 SINE Alu 2 102 -15 5 1743 276 258 62 73 chr1 151854934 151855030 -45340402 - B1F2 SINE Alu -54 95 1 5 1743 694 203 8 0 chr1 151855030 151855104 -45340328 - ID SINE ID -143 81 7 5 1743 1353 68 17 0 chr1 151855308 151855484 -45339948 + B2_Mm2 SINE B2 2 180 -15 5 1743 1196 77 0 6 chr1 151855484 151855654 -45339778 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 5 1743 359 325 46 34 chr1 151855655 151855830 -45339602 + MIR3 SINE MIR 8 184 -24 5 1743 488 300 8 23 chr1 151856713 151856846 -45338586 - ID_B1 SINE B4 -4 220 90 5 1743 203 236 0 35 chr1 151856901 151856958 -45338474 + A-rich Low_complexity Low_complexity 5 59 0 5 1743 793 0 0 0 chr1 151857340 151857438 -45337994 + L1Md_T LINE L1 6485 6582 0 5 1743 229 269 141 0 chr1 151857930 151858008 -45337424 - B1_Mur2 SINE Alu -21 128 40 5 1743 776 154 70 0 chr1 151858045 151858201 -45337231 - B2_Mm2 SINE B2 -28 167 1 5 1743 297 0 0 0 chr1 151858354 151858387 -45337045 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1743 678 25 0 0 chr1 151858387 151858466 -45336966 + (GA)n Simple_repeat Simple_repeat 2 81 0 6 1743 554 289 124 20 chr1 151858486 151858635 -45336797 + ID_B1 SINE B4 3 170 -54 6 1743 4798 50 13 5 chr1 151858635 151859233 -45336199 + L1_Mus1 LINE L1 5965 6567 0 6 1743 554 289 124 20 chr1 151859233 151859284 -45336148 + ID_B1 SINE B4 171 223 -1 6 1743 220 186 0 0 chr1 151859284 151859327 -45336105 + GA-rich Low_complexity Low_complexity 1 43 0 6 1743 252 143 0 0 chr1 151859975 151860017 -45335415 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1743 1264 89 0 91 chr1 151860020 151860072 -45335360 - B2_Mm2 SINE B2 -4 191 157 6 1743 2918 33 0 0 chr1 151860072 151860404 -45335028 + IAPEY3_LTR LTR ERVK 1 332 0 6 1743 1264 89 0 91 chr1 151860404 151860561 -45334871 - B2_Mm2 SINE B2 -39 156 1 6 1743 247 292 154 44 chr1 151860717 151860734 -45334698 + B4 SINE B4 70 101 -191 6 1743 541 261 0 42 chr1 151860734 151860854 -45334578 + PB1D7 SINE Alu 1 115 -5 6 1743 483 18 0 0 chr1 151860855 151860911 -45334521 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1743 459 0 0 0 chr1 151860911 151860961 -45334471 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1743 243 260 18 2 chr1 151861824 151861886 -45333546 + B1_Mus2 SINE Alu 2 63 -57 6 1743 465 252 132 25 chr1 151861899 151862058 -45333374 - RLTR22_Mur LTR ERVK 0 1848 1673 6 1743 498 61 0 0 chr1 151862654 151862720 -45332712 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1743 296 246 42 27 chr1 151862981 151863055 -45332377 - RSINE1 SINE B4 -215 77 3 6 1743 314 324 63 7 chr1 151863478 151863621 -45331811 - L1MA4 LINE L1 -368 5932 5782 6 1743 222 37 0 0 chr1 151863625 151863652 -45331780 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1743 2051 125 0 67 chr1 151863674 151864017 -45331415 - ORR1A4 LTR MaLR -8 321 2 6 1743 180 111 0 0 chr1 151864017 151864044 -45331388 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 6 1743 225 132 18 54 chr1 151864051 151864107 -45331325 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1743 333 112 324 27 chr1 151864143 151864254 -45331178 - B2_Mm2 SINE B2 -5 190 47 6 1743 913 142 0 0 chr1 151864272 151864413 -45331019 - B2_Mm2 SINE B2 -54 141 1 6 1743 339 279 68 36 chr1 151864413 151864558 -45330874 + L1M2 LINE L1 2701 2856 -3290 6 1743 417 20 0 0 chr1 151864558 151864608 -45330824 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1743 322 294 137 15 chr1 151864608 151864666 -45330766 + L1M2 LINE L1 2857 2929 -3217 6 1743 288 161 20 56 chr1 151864735 151864818 -45330614 - ORR1D1 LTR MaLR 0 374 244 6 1743 867 277 54 43 chr1 151864991 151865259 -45330173 - ORR1D-int LTR MaLR -990 380 108 6 1743 319 200 0 67 chr1 151865269 151865344 -45330088 + L1M2 LINE L1 3140 3209 -2934 6 1743 472 276 62 42 chr1 151865361 151865715 -45329717 - Lx8 LINE L1 -6 7467 7050 6 1743 677 288 71 74 chr1 151865719 151866113 -45329319 + RLTR12B LTR ERVK 122 514 -14 6 1743 349 250 29 29 chr1 151866115 151866218 -45329214 - Lx8 LINE L1 -1065 6408 6306 6 1743 385 284 53 24 chr1 151866223 151866432 -45329000 + L1_Mur3 LINE L1 3159 3373 -2507 6 1743 261 57 0 0 chr1 151866507 151866542 -45328890 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1743 354 256 0 47 chr1 151866544 151866630 -45328802 + B1_Mur1 SINE Alu 52 133 -16 6 1743 353 252 30 122 chr1 151866692 151866823 -45328609 + L1M2 LINE L1 3601 3719 -2424 6 1743 334 344 101 35 chr1 151867301 151867500 -45327932 - MIR SINE MIR -2 260 49 6 1743 260 342 2 0 chr1 151867794 151867868 -45327564 + ID4_ SINE ID 8 82 -70 6 1743 453 19 0 0 chr1 151867916 151867970 -45327462 + (CAAAA)n Simple_repeat Simple_repeat 5 58 0 6 1743 545 271 50 7 chr1 151868045 151868186 -45327246 + B1F SINE Alu 2 148 -1 6 1743 310 300 36 48 chr1 151868292 151868376 -45327056 + ID_B1 SINE B4 79 161 -63 6 1743 504 0 0 0 chr1 151868389 151868445 -45326987 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1743 487 309 107 22 chr1 151868659 151868930 -45326502 - MER2 DNA MER2_type -9 336 43 6 1743 308 191 95 0 chr1 151868928 151868991 -45326441 - PB1D7 SINE Alu 0 120 52 6 1743 387 0 0 0 chr1 151869049 151869092 -45326340 + (TTA)n Simple_repeat Simple_repeat 1 43 0 6 1743 1371 199 119 11 chr1 151872136 151872497 -45322935 - L1_Rod LINE L1 -63 5784 5385 6 1743 351 238 7 44 chr1 151872504 151872640 -45322792 + Lx9 LINE L1 5920 6050 -1594 6 1743 2095 231 54 12 chr1 151872750 151873268 -45322164 + Lx9 LINE L1 6306 6845 -799 6 1743 1944 135 56 70 chr1 151873268 151873641 -45321791 - RMER19C LTR ERVK 0 611 244 6 1743 224 261 29 0 chr1 151873839 151873908 -45321524 + T-rich Low_complexity Low_complexity 2 72 0 6 1743 479 271 32 8 chr1 151873923 151874046 -45321386 - B1F1 SINE Alu 0 149 24 6 1743 434 318 65 26 chr1 151875092 151875247 -45320185 - RSINE1 SINE B4 -2 163 3 6 1743 578 250 229 50 chr1 151875426 151875666 -45319766 + ORR1A4 LTR MaLR 1 283 -46 6 1743 646 36 0 0 chr1 151875667 151875750 -45319682 - L1Md_F3 LINE L1 -271 6311 6229 6 1743 1881 34 21 4 chr1 151875750 151875989 -45319443 + L1Md_F3 LINE L1 6341 6583 -1 6 1743 295 196 0 0 chr1 151876072 151876128 -45319304 + ORR1A4 LTR MaLR 312 367 0 6 1743 685 213 16 0 chr1 151876184 151876306 -45319126 - B1_Mur1 SINE Alu -9 140 17 6 1743 815 246 43 0 chr1 151876450 151876667 -45318765 + MT2B LTR ERVL 242 596 -5 6 1743 351 183 33 0 chr1 151876660 151876720 -45318712 - ORR1D2 LTR MaLR -308 62 1 6 1743 338 208 0 83 chr1 151876720 151876790 -45318642 + ID_B1 SINE B4 162 224 0 6 1743 434 320 15 58 chr1 151876881 151877087 -45318345 - B3A SINE B2 -1 197 1 6 1743 1228 41 0 20 chr1 151877480 151877630 -45317802 + B1_Mus2 SINE Alu 1 147 0 6 1743 417 123 0 0 chr1 151877630 151877695 -45317737 + (A)n Simple_repeat Simple_repeat 1 65 0 6 1743 274 290 142 20 chr1 151877885 151878033 -45317399 + MLT1J-int LTR MaLR 670 835 -552 6 1743 1830 158 149 5 chr1 151878186 151878554 -45316878 - MTC LTR MaLR 0 421 1 6 1743 429 254 40 16 chr1 151879354 151879492 -45315940 + B1F SINE Alu 9 149 0 6 1743 862 159 0 46 chr1 151879777 151879929 -45315503 - B1_Mus2 SINE Alu 0 147 3 6 1743 685 271 23 23 chr1 151880149 151880364 -45315068 + B3 SINE B2 2 216 0 6 1743 358 266 10 53 chr1 151880455 151880550 -45314882 + PB1D7 SINE Alu 13 99 -21 6 1743 987 264 67 48 chr1 151880550 151880864 -45314568 - MTE2a LTR MaLR -3 376 57 6 1743 224 362 38 0 chr1 151881100 151881112 -45314320 + ID SINE ID 69 84 -140 6 1743 277 328 96 15 chr1 151881112 151881248 -45314184 + B1_Mus2 SINE Alu 1 147 0 6 1743 1409 164 85 269 chr1 151881215 151881424 -45314008 + RMER4B LTR ERVK 1 200 -385 6 1743 228 67 0 0 chr1 151881424 151881454 -45313978 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 1743 3299 116 4 2 chr1 151881454 151881936 -45313496 - Lx2A LINE L1 -18 6990 6508 6 1743 1409 164 85 269 chr1 151881936 151882442 -45312990 + RMER4B LTR ERVK 201 584 -1 6 1743 293 316 0 0 chr1 151882447 151882523 -45312909 - ID_B1 SINE B4 -67 157 82 6 1743 577 169 0 14 chr1 151882536 151882674 -45312758 + CT-rich Low_complexity Low_complexity 1 136 0 6 1743 557 241 45 8 chr1 151882674 151882808 -45312624 - B1F2 SINE Alu -10 139 1 6 1743 320 229 57 0 chr1 151882817 151882887 -45312545 - PB1D7 SINE Alu -7 113 40 6 1743 5830 157 17 55 chr1 151882995 151885156 -45310276 - Lx LINE L1 -1 6653 4600 6 1743 17579 78 15 18 chr1 151885156 151887614 -45307818 - L1VL4 LINE L1 0 3559 1078 6 1743 315 0 0 0 chr1 151887614 151887649 -45307783 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1743 17579 110 22 7 chr1 151887649 151888737 -45306695 - L1VL4 LINE L1 -2482 1077 1 6 1743 456 313 14 7 chr1 151889602 151889750 -45305682 + B1F1 SINE Alu 1 149 0 6 1743 243 312 120 40 chr1 151889958 151890108 -45305324 - MIR SINE MIR -4 258 97 6 1743 354 283 28 9 chr1 151891982 151892089 -45303343 + PB1D7 SINE Alu 1 109 -11 6 1743 243 88 0 0 chr1 151892089 151892123 -45303309 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6 1743 183 129 0 0 chr1 151892419 151892450 -45302982 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 6 1743 261 210 0 0 chr1 151892458 151892520 -45302912 + CT-rich Low_complexity Low_complexity 1 62 0 6 1743 237 336 101 18 chr1 151892544 151892653 -45302779 - PB1D7 SINE Alu -2 118 1 6 1743 213 292 62 0 chr1 151892655 151892720 -45302712 + MER5B DNA MER1_type 110 178 0 6 1743 640 107 88 0 chr1 151892764 151893025 -45302407 + GA-rich Low_complexity Low_complexity 1 283 0 6 1743 217 253 0 135 chr1 151893153 151893249 -45302183 + L2b LINE L2 3303 3387 0 6 1743 479 279 39 0 chr1 151893388 151893492 -45301940 - B1_Mur1 SINE Alu -39 110 3 6 1743 834 234 50 33 chr1 151893586 151893767 -45301665 - B3 SINE B2 -29 187 4 6 1743 2154 241 29 8 chr1 151893849 151894375 -45301057 - Lx7 LINE L1 -766 6930 6394 6 1743 468 280 165 32 chr1 151894421 151894609 -45300823 + ID_B1 SINE B4 2 214 -10 6 1743 368 227 0 0 chr1 151894632 151894698 -45300734 + ID4 SINE ID 5 70 -13 6 1743 841 179 98 16 chr1 151894872 151895065 -45300367 + B3 SINE B2 3 211 -5 6 1743 9348 94 16 19 chr1 151895071 151896556 -45298876 + Lx3_Mus LINE L1 5561 7008 -1 6 1743 396 0 0 0 chr1 151896586 151896630 -45298802 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1743 236 345 22 44 chr1 151896998 151897089 -45298343 - B4A SINE B4 -118 174 86 6 1743 524 263 53 43 chr1 151897742 151897949 -45297483 - B3 SINE B2 -6 210 2 6 1743 2042 161 68 0 chr1 151897960 151898314 -45297118 + ORR1C1 LTR MaLR 1 378 0 6 1743 182 311 18 45 chr1 151898330 151898441 -45296991 - MIRb SINE MIR -67 201 94 6 1743 298 282 0 14 chr1 151899309 151899381 -45296051 + ID_B1 SINE B4 91 161 -63 6 1743 251 253 11 102 chr1 151899381 151899397 -45296035 + PB1D10 SINE Alu 10 89 -28 6 1743 479 17 0 16 chr1 151899412 151899473 -45295959 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1743 306 50 0 0 chr1 151899473 151899512 -45295920 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1743 378 315 114 20 chr1 151899529 151899827 -45295605 - L1MD3 LINE L1 -275 7720 7395 7 1743 384 236 80 18 chr1 151900057 151900169 -45295263 - PB1D7 SINE Alu -1 119 1 7 1743 26 30 0 0 chr1 151900299 151900332 -45295100 + AT_rich Low_complexity Low_complexity 1 33 0 7 1743 252 86 0 0 chr1 151900387 151900422 -45295010 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 7 1743 646 273 64 0 chr1 151900510 151900697 -45294735 - B3 SINE B2 -16 200 2 7 1743 462 312 155 53 chr1 151901073 151901337 -45294095 + B4A SINE B4 2 292 0 7 1743 470 349 0 8 chr1 151901496 151901623 -45293809 + RSINE1 SINE B4 36 161 -4 7 1743 471 35 0 0 chr1 151902109 151902166 -45293266 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1743 209 338 32 76 chr1 151902580 151902737 -45292695 + L2 LINE L2 2233 2382 -1037 7 1743 193 357 16 86 chr1 151903004 151903191 -45292241 + L2 LINE L2 2500 2673 -746 7 1743 491 146 21 0 chr1 151903201 151903297 -45292135 + T-rich Low_complexity Low_complexity 4 101 0 7 1743 288 212 0 0 chr1 151903314 151903380 -45292052 + CT-rich Low_complexity Low_complexity 1 66 0 7 1743 446 238 90 0 chr1 151903380 151903502 -45291930 - B1_Mur1 SINE Alu -7 142 10 7 1743 271 273 173 8 chr1 151903638 151903771 -45291661 + L2 LINE L2 2853 3007 -412 7 1743 495 0 0 0 chr1 151904567 151904622 -45290810 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1743 297 0 0 0 chr1 151904681 151904714 -45290718 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 7 1743 441 260 67 0 chr1 151904720 151904824 -45290608 - B1F SINE Alu -32 117 7 7 1743 426 281 57 14 chr1 151905660 151905801 -45289631 + B1F1 SINE Alu 3 149 0 7 1743 228 337 75 11 chr1 151906532 151906625 -45288807 - L2c LINE L2 -8 3379 3281 7 1743 254 276 89 62 chr1 151906873 151906985 -45288447 + PB1D9 SINE Alu 5 119 -1 7 1743 1803 204 178 7 chr1 151907303 151907758 -45287674 + MT2A LTR ERVL 1 533 0 7 1743 321 244 13 0 chr1 151908790 151908868 -45286564 - ID_B1 SINE B4 -63 161 83 7 1743 191 36 0 35 chr1 151909167 151909196 -45286236 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 7 1743 3001 232 118 33 chr1 151909297 151910291 -45285141 - RMER1A Other Other -1 1029 45 7 1743 549 0 0 0 chr1 151910291 151910352 -45285080 + (CTG)n Simple_repeat Simple_repeat 3 63 0 7 1743 1458 219 93 86 chr1 151910352 151910565 -45284867 - RMER1B Other Other -784 282 45 7 1743 409 299 94 0 chr1 151910659 151910786 -45284646 + B1F1 SINE Alu 6 144 -5 7 1743 264 77 0 0 chr1 151910788 151910827 -45284605 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 7 1743 271 312 41 10 chr1 151910827 151910924 -45284508 + B1F SINE Alu 45 144 -5 7 1743 602 13 13 0 chr1 151910993 151911068 -45284364 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 1743 387 336 7 7 chr1 151911177 151911321 -45284111 + B1F SINE Alu 1 144 -5 7 1743 363 239 31 66 chr1 151911733 151911860 -45283572 + B1F1 SINE Alu 13 148 -2 7 1743 221 302 159 0 chr1 151911921 151911984 -45283448 + ID SINE ID 2 74 -150 7 1744 407 270 48 55 chr1 151912492 151912637 -45282795 + B1_Mus1 SINE Alu 1 144 -4 7 1744 470 254 78 16 chr1 151912767 151912895 -45282537 + B1F SINE Alu 9 144 -5 7 1744 450 287 9 0 chr1 151913135 151913250 -45282182 - PB1D10 SINE Alu -1 116 1 7 1744 557 257 17 17 chr1 151913727 151913842 -45281590 + ID_B1 SINE B4 84 198 -26 7 1744 398 304 64 14 chr1 151913842 151913866 -45281566 + B1F1 SINE Alu 3 148 -1 7 1744 25 0 0 0 chr1 151914052 151914077 -45281355 + AT_rich Low_complexity Low_complexity 1 25 0 7 1744 258 304 152 0 chr1 151914308 151914387 -45281045 + PB1D7 SINE Alu 18 108 -12 7 1744 1700 210 63 0 chr1 151914725 151915072 -45280360 - MTD LTR MaLR -50 369 1 7 1744 297 155 121 0 chr1 151915155 151915213 -45280219 + RMER6A LTR ERVK 2 66 -654 7 1744 4232 175 69 6 chr1 151915247 151916202 -45279230 + Lx3C LINE L1 5960 6974 -2 7 1744 1678 170 34 67 chr1 151916228 151916934 -45278498 + RMER6A LTR ERVK 155 756 0 7 1744 704 240 76 6 chr1 151916934 151917096 -45278336 - MTD LTR MaLR -233 186 13 7 1744 243 0 0 0 chr1 151917096 151917123 -45278309 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1744 361 319 84 35 chr1 151917130 151917273 -45278159 - MLT1A0 LTR MaLR -58 307 158 7 1744 234 185 37 0 chr1 151917298 151917379 -45278053 + CT-rich Low_complexity Low_complexity 2 85 0 7 1744 552 280 0 77 chr1 151917402 151917572 -45277860 - RSINE1 SINE B4 -2 163 7 7 1744 268 210 0 129 chr1 151918057 151918150 -45277282 + PB1D9 SINE Alu 28 108 -12 7 1744 269 349 85 31 chr1 151918262 151918392 -45277040 + B1F1 SINE Alu 3 139 -10 7 1744 456 274 65 0 chr1 151918515 151918639 -45276793 - B1F2 SINE Alu -8 141 10 7 1744 397 230 97 9 chr1 151918681 151918795 -45276637 - B3 SINE B2 -1 215 92 7 1744 992 247 102 117 chr1 151918820 151919314 -45276118 + MT2A LTR ERVL 1 487 -46 7 1744 396 88 0 0 chr1 151919314 151919371 -45276061 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1744 992 247 102 117 chr1 151919371 151919417 -45276015 + MT2A LTR ERVL 488 533 0 7 1744 516 35 34 34 chr1 151919457 151919546 -45275886 + L1Md_F2 LINE L1 6494 6582 0 7 1744 505 97 0 46 chr1 151919642 151919750 -45275682 + (TCTCCC)n Simple_repeat Simple_repeat 5 107 0 7 1744 635 257 0 34 chr1 151919750 151919899 -45275533 - B1_Mur1 SINE Alu -5 144 1 7 1744 602 322 34 11 chr1 151919925 151920104 -45275328 - B3A SINE B2 -1 197 15 7 1744 213 39 0 0 chr1 151920442 151920468 -45274964 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1744 950 130 0 0 chr1 151920471 151920602 -45274830 - B1_Mus1 SINE Alu -12 136 6 7 1744 357 24 0 0 chr1 151920606 151920648 -45274784 + (TTGTG)n Simple_repeat Simple_repeat 4 45 0 7 1744 302 305 28 37 chr1 151920648 151920757 -45274675 - PB1D10 SINE Alu -9 108 1 7 1744 387 0 0 0 chr1 151920923 151920966 -45274466 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1744 507 319 53 19 chr1 151920968 151921176 -45274256 - ID_B1 SINE B4 -8 216 2 7 1744 685 273 48 24 chr1 151922475 151922685 -45272747 + B3 SINE B2 1 215 -1 7 1744 342 244 0 12 chr1 151922822 151922905 -45272527 + B3A SINE B2 1 82 -116 7 1744 402 302 45 30 chr1 151922868 151923001 -45272431 - B3 SINE B2 -81 135 1 7 1744 359 231 10 62 chr1 151923001 151923098 -45272334 - PB1D10 SINE Alu -2 115 24 7 1744 1326 292 19 24 chr1 151923833 151924209 -45271223 - MTE2b LTR MaLR -5 374 1 7 1744 264 236 73 0 chr1 151924530 151924585 -45270847 + ID_B1 SINE B4 160 218 -6 7 1744 268 298 0 67 chr1 151924708 151924723 -45270709 + ID SINE ID 1 15 -209 7 1744 612 0 0 0 chr1 151924723 151924791 -45270641 + (GGGA)n Simple_repeat Simple_repeat 3 70 0 7 1744 268 298 0 67 chr1 151924791 151924865 -45270567 + ID SINE ID 16 83 -141 7 1744 477 0 0 0 chr1 151924938 151924991 -45270441 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 7 1744 806 252 137 15 chr1 151925010 151925272 -45270160 + MLT2B2 LTR ERVL 4 297 -218 7 1744 251 343 0 0 chr1 151925483 151925550 -45269882 + MLT2B2 LTR ERVL 428 494 -68 7 1744 377 68 0 48 chr1 151925554 151925616 -45269816 + (CCCCCT)n Simple_repeat Simple_repeat 6 64 0 7 1744 441 255 81 75 chr1 151926048 151926209 -45269223 + RSINE1 SINE B4 4 165 0 7 1744 238 394 77 55 chr1 151926395 151926615 -45268817 + MLT1N2 LTR MaLR 80 304 -258 7 1744 279 0 0 0 chr1 151926750 151926781 -45268651 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1744 215 190 17 0 chr1 151926819 151926877 -45268555 + CT-rich Low_complexity Low_complexity 3 61 0 7 1744 207 114 0 0 chr1 151926897 151926932 -45268500 + (CAT)n Simple_repeat Simple_repeat 3 37 0 7 1744 621 144 0 0 chr1 151926945 151927049 -45268383 + (TC)n Simple_repeat Simple_repeat 1 104 0 7 1744 269 236 107 40 chr1 151927051 151927126 -45268306 - ID_B1 SINE B4 -9 215 136 7 1744 331 234 4 45 chr1 151927126 151927140 -45268292 - B1F1 SINE Alu -9 140 34 7 1744 1952 209 50 0 chr1 151927146 151927547 -45267885 + MTC LTR MaLR 1 421 0 7 1744 323 290 120 8 chr1 151927656 151927781 -45267651 + B1F SINE Alu 11 149 0 7 1744 307 309 137 36 chr1 151927862 151928191 -45267241 + L1MD LINE L1 3742 4103 -2043 7 1744 360 291 87 0 chr1 151928259 151928362 -45267070 + ID_B1 SINE B4 95 206 -18 7 1744 648 0 0 0 chr1 151928368 151928440 -45266992 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 7 1744 567 43 0 0 chr1 151928476 151928546 -45266886 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 7 1744 246 225 18 0 chr1 151928555 151928619 -45266813 + PB1D7 SINE Alu 1 65 -52 7 1744 212 309 48 0 chr1 151928645 151928729 -45266703 + MIRm SINE MIR 57 144 -132 7 1744 437 279 42 21 chr1 151928729 151928872 -45266560 + ID_B1 SINE B4 70 215 -9 7 1744 648 26 0 0 chr1 151928876 151928954 -45266478 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 7 1744 297 267 11 55 chr1 151928988 151929011 -45266421 + ID_B1 SINE B4 137 160 -64 7 1744 2396 75 130 207 chr1 151929011 151929566 -45265866 + RLTR1B LTR ERV1 1 512 0 7 1744 297 267 11 55 chr1 151929566 151929633 -45265799 + ID_B1 SINE B4 161 223 -1 7 1744 416 224 107 49 chr1 151929649 151929771 -45265661 + B1_Mur2 SINE Alu 14 142 -7 7 1744 265 272 20 40 chr1 151929776 151929896 -45265536 + PB1D7 SINE Alu 2 118 -2 7 1744 203 192 53 27 chr1 151930044 151930119 -45265313 + T-rich Low_complexity Low_complexity 2 78 0 7 1744 1234 47 0 0 chr1 151930123 151930271 -45265161 - B1_Mus1 SINE Alu 0 148 1 7 1744 756 159 91 0 chr1 151930272 151930404 -45265028 - B1_Mus1 SINE Alu -4 144 1 7 1744 857 19 19 0 chr1 151930452 151930558 -45264874 + (TTTCC)n Simple_repeat Simple_repeat 2 109 0 7 1744 468 51 0 0 chr1 151930558 151930617 -45264815 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1744 351 212 146 39 chr1 151930629 151930732 -45264700 - PB1D9 SINE Alu -5 115 2 8 1744 554 24 35 12 chr1 151930752 151930837 -45264595 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1744 315 195 180 22 chr1 151930862 151930951 -45264481 - RSINE1 SINE B4 -61 104 2 8 1744 243 250 149 28 chr1 151932087 151932194 -45263238 - RLTR22_Mur LTR ERVK -423 1425 1306 8 1744 729 215 0 0 chr1 151932213 151932441 -45262991 + (CA)n Simple_repeat Simple_repeat 1 228 0 8 1744 526 250 0 74 chr1 151932464 151932585 -45262847 + RSINE1 SINE B4 26 137 -28 8 1744 23 33 0 0 chr1 151932749 151932779 -45262653 + AT_rich Low_complexity Low_complexity 1 30 0 8 1744 618 252 0 21 chr1 151932807 151932949 -45262483 - ID_B1 SINE B4 -7 217 79 8 1744 846 271 36 12 chr1 151933164 151933411 -45262021 + Lx6 LINE L1 7179 7431 -29 8 1744 522 0 0 0 chr1 151933411 151933469 -45261963 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 8 1744 1727 137 3 34 chr1 151933924 151934214 -45261218 - RLTR10E LTR ERVK -34 356 1 8 1744 394 231 55 0 chr1 151934953 151935044 -45260388 + PB1D10 SINE Alu 4 99 -18 8 1744 308 325 92 17 chr1 151935207 151935326 -45260106 - RSINE1 SINE B4 -12 153 26 8 1744 767 11 11 0 chr1 151935939 151936031 -45259401 + (TCTTG)n Simple_repeat Simple_repeat 5 97 0 8 1744 590 0 14 0 chr1 151936804 151936874 -45258558 + (GAA)n Simple_repeat Simple_repeat 2 72 0 8 1744 1065 282 53 27 chr1 151936946 151937358 -45258074 + RMER5 LTR ERV1 112 534 0 8 1744 361 265 70 50 chr1 151937474 151937673 -45257759 - L1MC LINE L1 -677 5656 5454 8 1744 1176 82 0 0 chr1 151937731 151937878 -45257554 - B1_Mus2 SINE Alu 0 147 1 8 1744 441 233 112 40 chr1 151937903 151938028 -45257404 - B1F SINE Alu 0 149 16 8 1744 359 121 0 29 chr1 151938042 151938110 -45257322 + (TATG)n Simple_repeat Simple_repeat 1 66 0 8 1744 429 240 157 9 chr1 151938110 151938333 -45257099 - L1MC LINE L1 -776 5370 5115 8 1744 898 236 194 130 chr1 151938371 151938509 -45256923 + MT2A LTR ERVL 1 90 -443 8 1744 1167 87 17 11 chr1 151938509 151938523 -45256909 - B2_Mm1t SINE B2 -17 176 161 8 1744 501 68 0 0 chr1 151938523 151938597 -45256835 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 8 1744 1167 87 17 11 chr1 151938597 151938757 -45256675 - B2_Mm1t SINE B2 -33 160 1 8 1744 898 236 194 130 chr1 151938757 151939075 -45256357 + MT2A LTR ERVL 91 489 -44 8 1744 776 111 8 0 chr1 151939075 151939201 -45256231 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 8 1744 898 236 194 130 chr1 151939201 151939244 -45256188 + MT2A LTR ERVL 490 533 0 8 1744 2782 167 62 9 chr1 151939247 151939816 -45255616 + MERVL_2A-int LTR ERVL 3 601 -5160 8 1744 392 156 104 0 chr1 151939819 151939896 -45255536 + MERVL_2A-int LTR ERVL 794 878 -4883 8 1744 3302 132 21 111 chr1 151939896 151940618 -45254814 - RMER6C LTR ERVK -30 660 4 8 1744 237 65 0 0 chr1 151940747 151940778 -45254654 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1744 483 283 40 27 chr1 151940780 151940929 -45254503 - ID_B1 SINE B4 -1 223 73 8 1744 236 317 96 0 chr1 151940955 151941059 -45254373 + B3A SINE B2 5 118 -80 8 1744 326 338 60 13 chr1 151941129 151941279 -45254153 - L1MC LINE L1 -2035 4111 3955 8 1744 333 306 0 46 chr1 151941320 151941450 -45253982 - L1MC LINE L1 -2304 3842 3719 8 1744 770 282 5 31 chr1 151941467 151941661 -45253771 - B3 SINE B2 -26 190 2 8 1744 735 272 55 0 chr1 151941704 151941976 -45253456 - L1MC LINE L1 -2462 3684 3398 8 1744 893 266 0 10 chr1 151941980 151942177 -45253255 + B3 SINE B2 1 197 -19 8 1744 351 0 0 0 chr1 151942177 151942216 -45253216 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1744 446 49 0 16 chr1 151942317 151942379 -45253053 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1744 384 22 0 0 chr1 151942379 151942423 -45253009 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1744 804 341 34 15 chr1 151942428 151942690 -45252742 + B4A SINE B4 6 272 -20 8 1744 275 270 34 12 chr1 151942873 151942990 -45252442 - B1_Mur2 SINE Alu -2 147 25 8 1744 852 251 98 5 chr1 151943068 151943465 -45251967 - L1MC LINE L1 -2880 3266 2833 8 1744 287 203 14 0 chr1 151943495 151943569 -45251863 + CT-rich Low_complexity Low_complexity 3 77 0 8 1744 478 314 43 7 chr1 151943590 151943731 -45251701 - ID_B1 SINE B4 -1 223 78 8 1744 541 286 26 26 chr1 151943740 151943966 -45251466 - L1MC LINE L1 -3325 2821 2596 8 1744 419 280 89 13 chr1 151944012 151944247 -45251185 - L1MC LINE L1 -3625 2521 2269 8 1744 655 218 7 33 chr1 151944297 151944449 -45250983 + B1_Mus1 SINE Alu 1 148 0 8 1744 596 205 58 36 chr1 151945300 151945437 -45249995 - B1_Mur3 SINE Alu 0 149 10 8 1744 249 33 0 0 chr1 151946017 151946047 -45249385 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 8 1744 23 0 0 0 chr1 151947700 151947723 -45247709 + AT_rich Low_complexity Low_complexity 1 23 0 8 1744 22 0 0 0 chr1 151950149 151950171 -45245261 + AT_rich Low_complexity Low_complexity 1 22 0 8 1744 474 18 0 0 chr1 151950260 151950315 -45245117 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1744 528 270 184 28 chr1 151950490 151950633 -45244799 + B3 SINE B2 10 163 -53 8 1744 225 0 0 0 chr1 151950633 151950658 -45244774 + (CATA)n Simple_repeat Simple_repeat 4 28 0 8 1744 528 270 184 28 chr1 151950658 151950693 -45244739 + B3 SINE B2 164 216 0 8 1744 237 178 0 0 chr1 151952308 151952353 -45243079 + CT-rich Low_complexity Low_complexity 3 47 0 8 1744 29 60 0 0 chr1 151952925 151952975 -45242457 + AT_rich Low_complexity Low_complexity 1 50 0 8 1744 37 0 0 0 chr1 151954314 151954351 -45241081 + AT_rich Low_complexity Low_complexity 1 37 0 8 1744 21 89 0 0 chr1 151955098 151955154 -45240278 + AT_rich Low_complexity Low_complexity 1 56 0 8 1744 312 289 0 26 chr1 151955430 151955508 -45239924 + ID2 SINE ID 8 83 0 8 1744 1174 57 0 0 chr1 151955669 151955809 -45239623 + B1_Mm SINE Alu 1 140 -7 8 1744 378 0 0 0 chr1 151955819 151955861 -45239571 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 8 1744 540 287 0 0 chr1 151955914 151956036 -45239396 + RSINE1 SINE B4 3 124 -41 8 1744 291 28 0 0 chr1 151956036 151956072 -45239360 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1744 1482 47 7 7 chr1 151956161 151956439 -45238993 + (GGAGA)n Simple_repeat Simple_repeat 1 278 0 8 1744 646 238 42 0 chr1 151956445 151956588 -45238844 + B1_Mur1 SINE Alu 1 149 0 8 1744 363 275 90 16 chr1 151957094 151957216 -45238216 - B1_Mur1 SINE Alu -18 131 1 8 1744 339 54 0 0 chr1 151957251 151957307 -45238125 - MusHAL1 LINE L1 0 2712 2657 8 1744 516 32 0 0 chr1 151957307 151957369 -45238063 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 8 1744 869 139 61 0 chr1 151957369 151957534 -45237898 - Lx3_Mus LINE L1 -19 6990 6816 8 1744 4693 101 38 0 chr1 151957534 151958319 -45237113 - MusHAL1 LINE L1 -2529 824 4 8 1744 342 310 43 34 chr1 151958319 151958436 -45236996 - PB1D7 SINE Alu -2 118 1 8 1744 229 382 85 13 chr1 151958906 151959142 -45236290 + L2 LINE L2 2711 2963 -456 8 1744 236 211 0 19 chr1 151959148 151959201 -45236231 - MLT1A1 LTR MaLR 0 408 357 8 1744 362 202 67 0 chr1 151960046 151960150 -45235282 + L1MD2 LINE L1 6164 6274 -85 8 1744 566 200 66 50 chr1 151960226 151960347 -45235085 - B1F1 SINE Alu -1 148 26 8 1744 368 254 111 69 chr1 151960347 151960370 -45235062 - ID_B1 SINE B4 -1 223 74 8 1744 592 231 164 45 chr1 151960384 151960561 -45234871 - B3A SINE B2 0 198 1 8 1744 868 238 28 37 chr1 151960562 151960780 -45234652 - B3 SINE B2 0 216 1 8 1744 410 231 146 16 chr1 151960796 151960919 -45234513 - B1F2 SINE Alu -1 148 10 8 1744 299 276 11 65 chr1 151961011 151961104 -45234328 - B3A SINE B2 -109 89 2 8 1744 206 32 0 31 chr1 151961131 151961163 -45234269 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 8 1744 33 56 0 0 chr1 151961524 151961578 -45233854 + AT_rich Low_complexity Low_complexity 1 54 0 8 1744 405 0 0 0 chr1 151961635 151961680 -45233752 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1744 304 345 0 43 chr1 151961682 151961768 -45233664 - RSINE1 SINE B4 -53 112 32 8 1744 1488 139 120 72 chr1 151961768 151962117 -45233315 - ORR1B2 LTR MaLR 0 367 2 8 1744 304 345 0 43 chr1 151962117 151962145 -45233287 - RSINE1 SINE B4 -134 31 4 8 1744 357 317 45 65 chr1 151962151 151962186 -45233246 - ID_B1 SINE B4 -2 222 149 8 1744 504 198 0 0 chr1 151962186 151962272 -45233160 - B1F1 SINE Alu -46 103 18 8 1744 357 317 45 65 chr1 151962272 151962306 -45233126 - ID_B1 SINE B4 -2 148 71 8 1744 300 91 0 0 chr1 151963109 151963153 -45232279 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8 1744 318 50 0 0 chr1 151963271 151963311 -45232121 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 1744 1168 105 6 0 chr1 151963311 151963473 -45231959 - B2_Mm1t SINE B2 -30 163 1 8 1744 202 217 250 0 chr1 151963697 151963789 -45231643 + MIRb SINE MIR 33 147 -121 8 1744 573 259 105 55 chr1 151963807 151964007 -45231425 + ID_B1 SINE B4 10 219 -5 8 1744 398 218 140 70 chr1 151964298 151964441 -45230991 - RSINE1 SINE B4 -8 157 5 8 1744 1102 80 60 38 chr1 151964854 151965037 -45230395 + B2_Mm2 SINE B2 1 187 -8 8 1744 207 139 41 14 chr1 151965148 151965221 -45230211 + T-rich Low_complexity Low_complexity 3 77 0 8 1744 491 231 0 0 chr1 151966008 151966099 -45229333 + PB1D9 SINE Alu 1 91 -29 8 1744 4656 131 69 7 chr1 151966202 151966953 -45228479 - Lx3B LINE L1 -4 6969 6172 8 1744 357 197 0 0 chr1 151967047 151967123 -45228309 + CT-rich Low_complexity Low_complexity 2 77 0 8 1744 444 82 0 0 chr1 151967123 151967184 -45228248 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1744 456 219 35 18 chr1 151967188 151967295 -45228137 - PB1D7 SINE Alu -16 104 3 8 1744 634 255 7 33 chr1 151967295 151967445 -45227987 - B1_Mur2 SINE Alu -1 148 3 8 1744 996 135 0 0 chr1 151967647 151967788 -45227644 - B1_Mur3 SINE Alu 0 149 9 8 1744 204 213 0 0 chr1 151968124 151968171 -45227261 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1744 358 297 35 43 chr1 151968235 151968351 -45227081 - ID_B1 SINE B4 -34 190 76 8 1744 738 302 38 64 chr1 151968775 151968944 -45226488 - MER21B LTR ERV1 -513 350 178 8 1744 1269 106 115 10 chr1 151968944 151969144 -45226288 - URR1B DNA MER1_type 0 225 5 8 1744 738 302 38 64 chr1 151969144 151969239 -45226193 - MER21B LTR ERV1 -686 177 93 8 1744 22 0 0 0 chr1 151969400 151969422 -45226010 + AT_rich Low_complexity Low_complexity 1 22 0 8 1744 381 244 67 0 chr1 151969560 151969650 -45225782 + PB1D7 SINE Alu 18 113 -7 8 1744 239 260 52 0 chr1 151969788 151969865 -45225567 + ORR1D2 LTR MaLR 1 81 -289 8 1744 1080 251 112 30 chr1 151969859 151970261 -45225171 - RLTR28B LTR ERVL -42 439 5 9 1744 1141 247 125 10 chr1 151970229 151970532 -45224900 + ORR1D2 LTR MaLR 21 358 -12 9 1744 964 117 67 45 chr1 151970532 151970711 -45224721 + B2_Mm2 SINE B2 4 186 -9 9 1744 890 281 9 0 chr1 151970769 151970990 -45224442 + ID_B1 SINE B4 1 223 -1 9 1744 245 197 82 0 chr1 151971020 151971081 -45224351 + Lx6 LINE L1 7375 7440 -20 9 1744 528 214 0 0 chr1 151971099 151971216 -45224216 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 9 1744 24 53 0 0 chr1 151971263 151971301 -45224131 + AT_rich Low_complexity Low_complexity 1 38 0 9 1744 290 277 0 0 chr1 151971594 151971659 -45223773 + ID4 SINE ID 3 67 -16 9 1744 372 22 0 0 chr1 151971659 151971704 -45223728 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 1744 396 269 115 0 chr1 151972317 151972421 -45223011 + B1_Mur2 SINE Alu 21 136 -13 9 1744 273 57 0 0 chr1 151972435 151972470 -45222962 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1744 390 294 29 0 chr1 151972584 151972686 -45222746 + PB1D10 SINE Alu 5 109 -8 9 1744 396 0 0 0 chr1 151972687 151972731 -45222701 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 1744 257 0 30 0 chr1 151972731 151972763 -45222669 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1744 856 268 35 35 chr1 151972950 151973147 -45222285 + B3 SINE B2 2 198 0 9 1744 22 0 0 0 chr1 151973986 151974008 -45221424 + AT_rich Low_complexity Low_complexity 1 22 0 9 1744 307 218 224 53 chr1 151974502 151974730 -45220702 + HAL1 LINE L1 1938 2204 -303 9 1744 2158 161 273 47 chr1 151975288 151975609 -45219823 + RMER6C LTR ERVK 3 388 -302 9 1744 182 91 30 0 chr1 151975609 151975642 -45219790 + (CAGTG)n Simple_repeat Simple_repeat 2 35 0 9 1744 2158 174 34 53 chr1 151975642 151975824 -45219608 + RMER6C LTR ERVK 389 574 -116 9 1744 476 308 99 15 chr1 151975968 151976169 -45219263 + ID_B1 SINE B4 2 219 -5 9 1744 920 192 16 10 chr1 151976187 151976487 -45218945 + GA-rich Low_complexity Low_complexity 1 301 0 9 1744 948 309 44 7 chr1 151976637 151976908 -45218524 + B4 SINE B4 2 282 -10 9 1744 223 354 13 0 chr1 151977608 151977687 -45217745 - PB1D10 SINE Alu -23 94 15 9 1744 185 65 32 0 chr1 151978313 151978344 -45217088 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 9 1744 538 181 40 133 chr1 151978356 151978604 -45216828 - Lx9 LINE L1 -1 7643 7419 9 1744 434 206 78 0 chr1 151978657 151978759 -45216673 - PB1D7 SINE Alu -2 118 9 9 1744 227 243 142 55 chr1 151979060 151979243 -45216189 + L2 LINE L2 2801 2999 -420 9 1744 287 266 152 0 chr1 151979810 151979889 -45215543 + 5S rRNA rRNA 3 93 -28 9 1744 8037 7 0 0 chr1 151980323 151981217 -45214215 + L1Md_A LINE L1 5689 6582 0 9 1744 4837 139 4 103 chr1 151981217 151981909 -45213523 + ORR1A4-int LTR MaLR 1153 1770 -193 9 1744 240 35 0 0 chr1 151981909 151981938 -45213494 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1744 4837 139 4 103 chr1 151981938 151982145 -45213287 + ORR1A4-int LTR MaLR 1771 1963 0 9 1744 1944 157 28 6 chr1 151982145 151982466 -45212966 + ORR1A4 LTR MaLR 1 328 -1 9 1744 271 219 11 128 chr1 151982589 151982683 -45212749 - ID4_ SINE ID 0 83 1 9 1744 522 321 0 0 chr1 151983220 151983357 -45212075 - ID_B1 SINE B4 -4 220 84 9 1744 558 304 8 0 chr1 151983360 151983485 -45211947 - B1F SINE Alu -18 131 6 9 1744 246 273 42 175 chr1 151983405 151983645 -45211787 - MT2B LTR ERVL -344 240 33 9 1744 2880 41 3 3 chr1 151984102 151984448 -45210984 + ORR1A0 LTR MaLR 1 346 0 9 1744 350 339 166 37 chr1 151984635 151984850 -45210582 - LTR50 LTR ERVL -542 253 37 9 1744 889 224 57 47 chr1 151985158 151985369 -45210063 - ID_B1 SINE B4 -1 223 11 9 1744 900 158 0 40 chr1 151985574 151985726 -45209706 + B1_Mus1 SINE Alu 3 148 0 9 1744 594 0 0 0 chr1 151985921 151985987 -45209445 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 1744 380 247 161 0 chr1 151986008 151986101 -45209331 - B1F SINE Alu -41 108 1 9 1744 219 267 78 26 chr1 151986041 151986118 -45209314 - B4A SINE B4 -141 151 71 9 1744 548 302 160 50 chr1 151986399 151986728 -45208704 - MLT1B LTR MaLR -7 358 12 9 1744 254 206 175 0 chr1 151987776 151987839 -45207593 + B4 SINE B4 2 75 -217 9 1744 21 0 0 0 chr1 151987847 151987868 -45207564 + AT_rich Low_complexity Low_complexity 1 21 0 9 1744 2354 173 87 39 chr1 151988539 151989079 -45206353 - RLTR12A LTR ERVK 0 568 3 9 1744 256 345 51 17 chr1 151989263 151989381 -45206051 + YREP_Mm Unknown Unknown 168 289 -1523 9 1744 726 297 36 5 chr1 151989275 151989468 -45205964 - ID_B1 SINE B4 -3 221 23 9 1744 546 290 35 75 chr1 151989553 151989754 -45205678 - B3A SINE B2 -5 193 1 9 1744 2040 140 310 4 chr1 151989856 151990308 -45205124 - Lx2B LINE L1 -19 6981 6392 9 1744 880 274 4 18 chr1 151990324 151990551 -45204881 + ID_B1 SINE B4 1 224 0 9 1744 973 238 90 0 chr1 151990782 151991005 -45204427 - MTEb LTR MaLR 0 379 137 9 1744 398 69 17 0 chr1 151991527 151991585 -45203847 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1744 255 173 92 13 chr1 151992887 151992963 -45202469 + Lx5 LINE L1 6965 7046 -4 9 1744 628 253 90 90 chr1 151993971 151994171 -45201261 - B3 SINE B2 -15 201 2 9 1744 206 270 0 51 chr1 151994465 151994543 -45200889 + CT-rich Low_complexity Low_complexity 3 76 0 9 1744 408 261 101 0 chr1 151994728 151994847 -45200585 - B1F1 SINE Alu -18 131 1 9 1744 183 114 0 0 chr1 151994883 151994918 -45200514 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1744 1240 48 0 0 chr1 151994918 151995065 -45200367 - B1_Mm SINE Alu 0 147 1 9 1744 962 58 7 0 chr1 151995099 151995237 -45200195 + (GA)n Simple_repeat Simple_repeat 1 139 0 9 1744 221 186 34 0 chr1 151995254 151995313 -45200119 + GA-rich Low_complexity Low_complexity 4 64 0 9 1744 363 272 146 0 chr1 151995324 151995427 -45200005 - RSINE1 SINE B4 -26 139 22 9 1744 1488 235 46 30 chr1 151995433 151995801 -45199631 + ORR1D1 LTR MaLR 1 374 0 9 1744 1759 200 40 17 chr1 151996442 151996793 -45198639 + ORR1C1 LTR MaLR 1 359 -19 9 1744 4879 211 94 47 chr1 151996976 151997109 -45198323 - Lx9 LINE L1 -3 7641 7478 9 1744 612 40 0 0 chr1 151997109 151997184 -45198248 + (TA)n Simple_repeat Simple_repeat 2 76 0 9 1744 4879 211 94 47 chr1 151997184 151998491 -45196941 - Lx9 LINE L1 -167 7477 6135 9 1744 423 98 0 0 chr1 151998896 151998957 -45196475 + (CTTG)n Simple_repeat Simple_repeat 2 62 0 9 1744 607 224 7 50 chr1 151998957 151999098 -45196334 - B1_Mur2 SINE Alu -2 147 13 9 1744 305 301 52 111 chr1 151998965 151999118 -45196314 - B4A SINE B4 -73 219 76 9 1744 527 314 54 101 chr1 151999393 151999562 -45195870 + MLT1C LTR MaLR 28 195 -272 9 1744 327 85 0 0 chr1 151999562 151999609 -45195823 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1744 527 314 54 101 chr1 151999609 151999775 -45195657 + MLT1C LTR MaLR 196 347 -120 9 1744 357 336 0 8 chr1 152000085 152000202 -45195230 + MLT1A LTR MaLR 45 160 -214 1 1744 305 174 14 0 chr1 152000824 152000893 -45194539 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1744 1872 181 67 25 chr1 152002348 152002661 -45192771 - MTC LTR MaLR 0 421 109 3 1744 817 153 29 7 chr1 152002661 152002799 -45192633 + B1_Mur4 SINE Alu 1 141 -9 4 1744 800 20 20 0 chr1 152002799 152002900 -45192532 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 5 1744 1872 181 67 25 chr1 152002900 152002987 -45192445 - MTC LTR MaLR -313 108 5 3 1744 369 242 0 125 chr1 152003965 152004069 -45191363 + B1F2 SINE Alu 43 133 -16 6 1744 662 64 76 6 chr1 152004071 152004228 -45191204 + (TA)n Simple_repeat Simple_repeat 2 169 0 7 1744 358 240 125 0 chr1 152004675 152004771 -45190661 - PB1D7 SINE Alu -3 117 10 8 1744 227 246 0 17 chr1 152004771 152004829 -45190603 + (TTA)n Simple_repeat Simple_repeat 1 57 0 9 1744 505 288 32 0 chr1 152004830 152004955 -45190477 - B1_Mur3 SINE Alu -3 146 18 1 1744 375 23 0 0 chr1 152005541 152005585 -45189847 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1744 1590 63 9 22 chr1 152005792 152006020 -45189412 - L1_Mus3 LINE L1 0 6638 6414 1 1744 2068 139 34 62 chr1 152006160 152006597 -45188835 - Lx9 LINE L1 -1 7643 7219 1 1744 2389 157 62 9 chr1 152006607 152007130 -45188302 - RMER4B LTR ERVK 0 585 1 1 1744 192 224 122 84 chr1 152007678 152007785 -45187647 - L3 LINE CR1 -3623 866 756 1 1744 663 246 51 65 chr1 152007957 152008174 -45187258 - B3 SINE B2 -1 215 2 1 1744 697 207 27 7 chr1 152008303 152008449 -45186983 - B1_Mur1 SINE Alu 0 149 1 1 1744 1131 329 64 27 chr1 152008606 152009015 -45186417 - MLT2F LTR ERVL -121 542 119 1 1744 299 329 0 0 chr1 152009094 152009173 -45186259 - MER2 DNA MER2_type -22 323 245 1 1744 7318 67 2 6 chr1 152009173 152010290 -45185142 - L1Md_F2 LINE L1 -13 6569 5458 2 1744 260 336 112 0 chr1 152010360 152010494 -45184938 - MER2 DNA MER2_type -189 156 8 1 1744 828 170 14 14 chr1 152010645 152010788 -45184644 - B1_Mus2 SINE Alu 0 147 5 2 1744 338 250 45 128 chr1 152010650 152010806 -45184626 - B4A SINE B4 -72 220 78 2 1744 381 227 89 40 chr1 152011098 152011199 -45184233 + PB1D9 SINE Alu 2 107 -13 2 1744 239 348 29 40 chr1 152011246 152011439 -45183993 + ID_B1 SINE B4 35 223 -69 2 1744 514 284 39 0 chr1 152011461 152011588 -45183844 + B1F SINE Alu 18 149 0 2 1744 489 267 9 0 chr1 152012877 152012982 -45182450 - B1F SINE Alu -14 135 30 2 1744 207 292 61 15 chr1 152013072 152013138 -45182294 + MIRm SINE MIR 54 122 -154 2 1744 218 0 94 0 chr1 152013150 152013182 -45182250 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1744 392 264 9 26 chr1 152013345 152013458 -45181974 + PB1D10 SINE Alu 1 111 -6 2 1744 444 240 106 0 chr1 152013657 152013761 -45181671 - PB1D10 SINE Alu -2 115 1 3 1744 313 340 80 70 chr1 152013806 152014106 -45181326 - MARNA DNA Mariner -38 548 246 3 1744 2018 157 20 15 chr1 152014273 152014616 -45180816 - ORR1B2 LTR MaLR 0 367 23 3 1744 236 30 0 29 chr1 152014619 152014653 -45180779 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1744 7422 128 84 18 chr1 152014653 152015304 -45180128 - Lx4A LINE L1 -15 7043 6333 3 1744 3339 50 30 14 chr1 152015304 152015733 -45179699 + RLTR10C LTR ERVK 1 436 0 3 1744 7422 128 84 18 chr1 152015733 152016019 -45179413 - Lx4A LINE L1 -726 6332 6023 3 1744 5815 40 0 0 chr1 152016019 152016715 -45178717 - L1Md_A LINE L1 -1 6581 5886 3 1744 21877 118 44 39 chr1 152016715 152018729 -45176703 - Lx4A LINE L1 -1036 6022 4074 3 1744 260 91 23 0 chr1 152018729 152018773 -45176659 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 3 1744 21877 117 41 40 chr1 152018773 152020996 -45174436 - Lx4A LINE L1 -1804 4073 1779 3 1744 583 294 114 97 chr1 152021234 152021637 -45173795 + RLTR26 LTR ERVK 202 611 -31 3 1744 565 298 0 159 chr1 152022527 152022754 -45172678 + B3A SINE B2 1 191 -7 3 1744 22 35 0 0 chr1 152022754 152022783 -45172649 + AT_rich Low_complexity Low_complexity 1 29 0 4 1744 3117 193 65 25 chr1 152022802 152023567 -45171865 + Lx9 LINE L1 6711 7506 -138 4 1744 3139 159 85 38 chr1 152024955 152025915 -45169517 + RLTR13D1 LTR ERVK 1 1023 0 4 1744 778 199 3 14 chr1 152026446 152026715 -45168717 + CT-rich Low_complexity Low_complexity 1 266 0 4 1744 960 285 152 33 chr1 152027127 152027550 -45167882 + L1M2 LINE L1 2558 3091 -3052 4 1744 369 0 0 0 chr1 152027550 152027591 -45167841 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1744 960 284 133 33 chr1 152027591 152028295 -45167137 + L1M2 LINE L1 3057 3870 -2273 4 1744 558 259 69 12 chr1 152028305 152028465 -45166967 + B3 SINE B2 1 164 -34 4 1744 306 0 0 0 chr1 152028465 152028499 -45166933 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1744 524 303 64 53 chr1 152028499 152028526 -45166906 + B3A SINE B2 165 190 -8 4 1744 271 288 43 14 chr1 152028557 152028698 -45166734 + L1M2 LINE L1 3874 4018 -2125 4 1744 501 200 15 15 chr1 152028773 152028905 -45166527 + Lx9 LINE L1 7505 7636 -8 4 1744 24017 110 106 7 chr1 152028999 152034016 -45161416 + L1Md_F2 LINE L1 387 5928 -654 4 1744 1861 123 12 51 chr1 152034016 152034351 -45161081 - RLTRETN_Mm LTR ERVK 0 322 1 4 1744 1700 134 35 52 chr1 152034351 152034697 -45160735 - MMETn-int LTR ERVK 0 4844 4505 4 1744 24944 66 1 0 chr1 152034703 152038126 -45157306 - L1_Mm LINE L1 -133 5750 2324 5 1744 15130 72 10 43 chr1 152038127 152040449 -45154983 - MMETn-int LTR ERVK -2598 2246 2 4 1744 1959 128 9 51 chr1 152040450 152040786 -45154646 - RLTRETN_Mm LTR ERVK 0 322 1 4 1744 5454 44 0 5 chr1 152040786 152041449 -45153983 + L1Md_F2 LINE L1 5923 6582 0 5 1744 7361 59 11 0 chr1 152041476 152042585 -45152847 + L1_Mus1 LINE L1 5447 6567 0 5 27 604 255 110 63 chr1 152043185 152043549 -45151883 - Charlie1 DNA MER1_type -107 2674 2294 5 1745 180 0 0 0 chr1 152043716 152043736 -45151696 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1745 236 250 0 35 chr1 152043754 152043812 -45151620 - ID_B1 SINE B4 0 224 169 5 1745 2697 67 8 50 chr1 152043812 152044190 -45151242 + L1_Mus2 LINE L1 6205 6566 0 5 1745 231 226 28 254 chr1 152044190 152044272 -45151160 - B1F2 SINE Alu -59 90 40 5 1745 511 287 58 58 chr1 152044209 152044273 -45151159 - ID_B1 SINE B4 -46 178 121 5 1745 1374 137 4 41 chr1 152044273 152044517 -45150915 + Lx LINE L1 6420 6654 0 5 1745 511 287 58 58 chr1 152044517 152044626 -45150806 - ID_B1 SINE B4 -104 120 5 5 1745 590 262 83 15 chr1 152045518 152045650 -45149782 + RSINE1 SINE B4 2 142 -23 6 1745 355 212 0 12 chr1 152046615 152046696 -45148736 + L1VL4 LINE L1 521 600 -5702 6 1745 1229 95 0 0 chr1 152046696 152046864 -45148568 + B2_Mm2 SINE B2 1 168 -27 6 1745 248 28 56 0 chr1 152046869 152046905 -45148527 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 1745 426 174 0 0 chr1 152046956 152047048 -45148384 + L1_Mur1 LINE L1 938 1029 -5953 6 1745 3592 77 106 16 chr1 152047065 152047622 -45147810 - RLTR13D6 LTR ERVK -13 889 283 6 1745 3299 125 2 23 chr1 152048016 152048540 -45146892 + Lx3B LINE L1 6458 6970 -3 6 1745 314 262 0 12 chr1 152048749 152048834 -45146598 + CT-rich Low_complexity Low_complexity 2 85 0 6 1745 1086 240 123 15 chr1 152050685 152051019 -45144413 - Lx6 LINE L1 -2 7458 7089 6 1745 1844 169 63 18 chr1 152051058 152051113 -45144319 - Lx6 LINE L1 -510 6950 6895 6 1745 452 18 18 0 chr1 152051113 152051170 -45144262 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1745 1844 169 63 18 chr1 152051170 152051494 -45143938 - Lx6 LINE L1 -566 6894 6556 6 1745 1193 157 5 25 chr1 152051515 152051717 -45143715 - RMER10A LTR ERVL -244 198 1 7 1745 2309 209 11 11 chr1 152051717 152052182 -45143250 - Lx6 LINE L1 -902 6558 6094 6 1745 1778 168 137 20 chr1 152052272 152052666 -45142766 - RMER10A LTR ERVL 0 442 3 7 1745 289 360 0 50 chr1 152052705 152052825 -45142607 + B1F2 SINE Alu 4 117 -32 7 1745 773 207 0 14 chr1 152052847 152052989 -45142443 + B1_Mur4 SINE Alu 11 150 0 7 1745 1915 146 39 81 chr1 152053350 152053760 -45141672 - RLTR9C LTR ERVK 0 393 1 7 1745 514 152 40 0 chr1 152053952 152054077 -45141355 + (TA)n Simple_repeat Simple_repeat 2 131 0 7 1745 420 20 0 0 chr1 152054182 152054231 -45141201 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1745 384 183 0 0 chr1 152055842 152055935 -45139497 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 1745 342 268 24 12 chr1 152056241 152056324 -45139108 - B4A SINE B4 -206 86 3 7 1745 212 328 0 72 chr1 152056342 152056467 -45138965 + L2 LINE L2 2380 2495 -924 7 1745 441 0 0 0 chr1 152056580 152056629 -45138803 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1745 275 270 16 0 chr1 152056730 152056793 -45138639 + B1F SINE Alu 79 142 -7 8 1745 211 293 93 0 chr1 152057360 152057435 -45137997 - ID_B1 SINE B4 -118 106 25 8 1745 255 262 66 0 chr1 152057381 152057442 -45137990 - ID4 SINE ID -2 81 17 8 1745 733 256 226 30 chr1 152057561 152057936 -45137496 - RMER21B LTR ERV1 -111 836 301 8 1745 633 185 81 7 chr1 152057997 152058133 -45137299 + B1_Mur4 SINE Alu 5 150 0 8 1745 2506 262 114 12 chr1 152058213 152059361 -45136071 + Lx9 LINE L1 6156 7472 -172 8 1745 7001 151 10 34 chr1 152060228 152061663 -45133769 + Lx5 LINE L1 2878 4277 -1600 8 1745 2282 112 23 11 chr1 152061663 152062014 -45133418 - RLTR22_Mur LTR ERVK -1212 636 282 8 1745 3947 67 5 2 chr1 152062014 152062566 -45132866 + L1Md_F3 LINE L1 5033 5586 -297 8 1745 8364 32 0 1 chr1 152062566 152063550 -45131882 + L1Md_F3 LINE L1 5587 6569 -15 8 1745 186 43 0 0 chr1 152063550 152063573 -45131859 + (TA)n Simple_repeat Simple_repeat 1 23 0 9 1745 1866 137 0 14 chr1 152063574 152063871 -45131561 - RLTR22_Mur LTR ERVK -1555 293 1 8 1745 6506 178 45 16 chr1 152063871 152065371 -45130061 + Lx5 LINE L1 5392 6939 -111 8 1745 1701 177 57 21 chr1 152065372 152065706 -45129726 - MTC LTR MaLR -75 346 1 9 1745 230 128 0 49 chr1 152066456 152066497 -45128935 - ID_B1 SINE B4 -12 212 174 9 1745 245 173 58 0 chr1 152066472 152066524 -45128908 - PB1D7 SINE Alu -29 91 37 9 1745 879 265 25 15 chr1 152066609 152066808 -45128624 - B3 SINE B2 -5 211 11 9 1745 367 249 26 164 chr1 152067530 152067752 -45127680 - RLTR31A_Mm LTR ERVK 0 590 307 9 1745 3592 143 48 40 chr1 152067768 152068416 -45127016 - RLTR17 LTR ERVK -39 653 1 9 1745 410 304 95 15 chr1 152068441 152068578 -45126854 - RSINE1 SINE B4 -3 162 15 9 1745 751 343 102 87 chr1 152068607 152068843 -45126589 - MER21B LTR ERV1 -396 467 198 9 1745 402 54 0 0 chr1 152068843 152068899 -45126533 - L1_Mus1 LINE L1 -9 6558 6503 9 1745 751 343 102 87 chr1 152068899 152068939 -45126493 - MER21B LTR ERV1 -666 197 158 9 1745 1187 34 0 27 chr1 152068939 152069089 -45126343 - B1_Mm SINE Alu 0 147 2 1 1745 751 343 102 87 chr1 152069089 152069271 -45126161 - MER21B LTR ERV1 -706 157 2 9 1745 631 214 53 0 chr1 152069336 152069467 -45125965 + B1_Mur2 SINE Alu 1 138 -11 1 1745 365 263 32 147 chr1 152069905 152070061 -45125371 - MLT1A1 LTR MaLR -270 138 1 1 1745 268 221 25 141 chr1 152070339 152070460 -45124972 - PB1D10 SINE Alu -10 107 1 1 1745 208 140 39 20 chr1 152070474 152070525 -45124907 + CT-rich Low_complexity Low_complexity 1 52 0 1 1745 995 135 0 7 chr1 152070558 152070707 -45124725 - B1_Mur4 SINE Alu -2 148 1 1 1745 340 311 209 9 chr1 152071435 152071646 -45123786 - MER21B LTR ERV1 -62 801 549 1 1745 262 217 17 0 chr1 152071691 152071751 -45123681 - MER21B LTR ERV1 -382 481 421 1 1745 377 357 56 7 chr1 152071933 152072077 -45123355 - MER21B LTR ERV1 -520 343 193 1 1745 21 0 0 0 chr1 152072419 152072440 -45122992 + AT_rich Low_complexity Low_complexity 1 21 0 1 1745 650 213 88 0 chr1 152072441 152072577 -45122855 - B1_Mur1 SINE Alu -1 148 1 1 1745 180 0 0 0 chr1 152072584 152072604 -45122828 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1745 187 239 0 0 chr1 152073450 152073496 -45121936 - MIR SINE MIR -61 201 156 1 1745 1576 158 120 38 chr1 152074409 152074751 -45120681 + ORR1D1 LTR MaLR 5 374 0 1 1745 378 382 12 19 chr1 152074950 152075110 -45120322 + L2b LINE L2 3215 3373 -2 1 1745 636 298 82 19 chr1 152076188 152076445 -45118987 - B4A SINE B4 -18 274 2 1 1745 198 0 0 0 chr1 152076702 152076724 -45118708 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 1 1745 2142 118 67 137 chr1 152076814 152077325 -45118107 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1745 334 96 82 0 chr1 152077327 152077400 -45118032 + IAPEz-int LTR ERVK 3 81 -1906 1 1745 401 128 114 105 chr1 152077440 152077545 -45117887 + IAPEz-int LTR ERVK 18 123 -6358 1 1745 244 244 0 0 chr1 152077545 152077590 -45117842 + RLTR27 LTR ERVK 231 275 -34 1 1745 226 327 0 0 chr1 152077616 152077671 -45117761 + RLTR27 LTR ERVK 221 275 -34 1 1745 236 327 0 0 chr1 152077697 152077752 -45117680 + RLTR27 LTR ERVK 221 275 -34 1 1745 2698 70 3 0 chr1 152077752 152078312 -45117120 + IAPEz-int LTR ERVK 168 578 -5903 1 1745 1665 127 18 18 chr1 152078319 152078591 -45116841 - IAPLTR2_Mm LTR ERVK -203 272 1 1 1745 235 232 12 12 chr1 152078792 152078875 -45116557 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1745 764 309 44 51 chr1 152078907 152079180 -45116252 - B4A SINE B4 -11 281 11 1 1745 33729 37 1 0 chr1 152079564 152085567 -45109865 + L1Md_T LINE L1 1 5589 -297 1 1745 8963 6 1 0 chr1 152085567 152086562 -45108870 + L1Md_T LINE L1 5590 6585 0 1 1745 414 0 0 0 chr1 152086747 152086793 -45108639 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1745 1565 140 33 4 chr1 152087589 152087861 -45107571 + L1_Mur2 LINE L1 5523 5802 -75 1 1745 262 299 134 27 chr1 152089101 152089400 -45106032 - L1M5 LINE L1 -2130 4016 3686 1 1745 1177 235 63 58 chr1 152089450 152089552 -45105880 + MER67D LTR ERV1 1 104 -410 1 1745 216 0 0 0 chr1 152089552 152089576 -45105856 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1745 1177 235 63 58 chr1 152089576 152089835 -45105597 + MER67D LTR ERV1 105 363 -151 1 1745 569 297 125 10 chr1 152090154 152090443 -45104989 - Lx9 LINE L1 -344 7300 6979 1 1745 218 369 0 0 chr1 152091119 152091184 -45104248 + ID4 SINE ID 6 70 -13 1 1745 459 0 0 0 chr1 152091186 152091237 -45104195 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1745 369 0 0 0 chr1 152091237 152091277 -45104155 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1745 599 107 15 30 chr1 152091314 152091449 -45103983 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 1 1745 287 289 33 29 chr1 152091503 152091777 -45103655 + L1M5 LINE L1 4101 4375 -1771 1 1745 265 339 104 7 chr1 152091856 152092135 -45103297 + L1M5 LINE L1 5298 5603 -637 1 1745 4810 132 14 9 chr1 152092481 152093322 -45102110 - L1_Mur2 LINE L1 -431 5446 4602 1 1745 723 125 0 0 chr1 152093321 152093425 -45102007 + L1_Mur2 LINE L1 5453 5556 -321 1 1745 1412 108 0 9 chr1 152093425 152093641 -45101791 - L1Md_F2 LINE L1 -12 6570 6357 1 1745 6014 149 44 12 chr1 152093635 152094698 -45100734 + Lx4A LINE L1 5957 7053 -5 1 1745 219 103 0 0 chr1 152094698 152094737 -45100695 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1 1745 285 282 42 0 chr1 152094747 152094818 -45100614 - ID2 SINE ID -1 82 9 1 1745 372 140 0 0 chr1 152095110 152095167 -45100265 - MLT2C2 LTR ERVL 0 559 503 1 1745 423 280 5 32 chr1 152095175 152095302 -45100130 - PB1D10 SINE Alu -24 123 1 1 1745 298 340 6 83 chr1 152095302 152095363 -45100069 - ID SINE ID -144 80 32 1 1745 271 327 18 36 chr1 152095320 152095431 -45100001 - MLT2B4 LTR ERVL -93 463 355 1 1745 419 226 75 17 chr1 152095472 152095609 -45099823 - MLT2B4 LTR ERVL -206 208 65 1 1745 513 0 0 0 chr1 152096264 152096321 -45099111 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 1745 21 36 0 0 chr1 152096337 152096365 -45099067 + AT_rich Low_complexity Low_complexity 1 28 0 1 1745 239 169 78 0 chr1 152096410 152096487 -45098945 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1745 36 40 0 0 chr1 152096497 152096547 -45098885 + AT_rich Low_complexity Low_complexity 1 50 0 1 1745 257 158 0 0 chr1 152096605 152096643 -45098789 + PB1D7 SINE Alu 81 118 -2 1 1745 432 0 0 0 chr1 152096844 152096892 -45098540 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1745 671 106 4 94 chr1 152097083 152097338 -45098094 + (TG)n Simple_repeat Simple_repeat 1 231 0 1 1745 1196 157 18 40 chr1 152097980 152098205 -45097227 - URR1B DNA MER1_type -5 220 1 1 1745 249 394 19 0 chr1 152099268 152099372 -45096060 + PB1D10 SINE Alu 1 106 -11 1 1745 3123 88 2 19 chr1 152099428 152099889 -45095543 + Lx LINE L1 5845 6297 -357 1 1745 2091 144 14 0 chr1 152099887 152100254 -45095178 - L1_Mur1 LINE L1 -249 5637 5266 1 1745 4976 134 18 22 chr1 152100255 152101069 -45094363 + Lx2B LINE L1 6180 6990 -10 1 1745 190 340 116 27 chr1 152101602 152101714 -45093718 + MER5A DNA MER1_type 68 189 0 1 1745 730 258 0 47 chr1 152102421 152102592 -45092840 + B3A SINE B2 1 163 -35 1 1745 618 275 102 30 chr1 152102701 152102967 -45092465 + B4A SINE B4 2 286 -6 1 1745 580 275 35 7 chr1 152103117 152103260 -45092172 + B1F SINE Alu 1 147 -2 1 1745 22 35 0 0 chr1 152103373 152103402 -45092030 + AT_rich Low_complexity Low_complexity 1 29 0 1 1745 440 275 40 126 chr1 152103517 152103644 -45091788 + PB1 SINE Alu 2 125 -2 1 1745 288 344 90 18 chr1 152103946 152104112 -45091320 + MIRb SINE MIR 43 220 -48 1 1745 1650 187 101 21 chr1 152104168 152104556 -45090876 + MTD LTR MaLR 1 419 0 1 1745 789 249 19 61 chr1 152104804 152105018 -45090414 + B3 SINE B2 1 205 -11 1 1745 830 156 58 48 chr1 152105661 152105850 -45089582 - B2_Mm2 SINE B2 -4 191 1 1 1745 756 291 17 0 chr1 152105969 152106148 -45089284 + B3 SINE B2 4 185 -31 1 1745 513 335 34 43 chr1 152107820 152108029 -45087403 + MER20 DNA MER1_type 1 207 -12 1 1745 257 259 230 149 chr1 152108908 152109077 -45086355 + MLT1A1 LTR MaLR 1 135 -230 1 1745 402 21 0 0 chr1 152109077 152109124 -45086308 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1745 281 221 154 119 chr1 152109124 152109285 -45086147 + MLT1A1 LTR MaLR 136 400 -8 1 1745 540 0 0 0 chr1 152109868 152109928 -45085504 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1745 270 81 0 0 chr1 152109928 152109965 -45085467 + (TCCCC)n Simple_repeat Simple_repeat 2 38 0 1 1745 698 242 6 44 chr1 152109976 152110136 -45085296 - ID_B1 SINE B4 -70 154 1 1 1745 562 191 272 0 chr1 152110361 152110508 -45084924 - B3 SINE B2 -26 190 4 1 1745 336 325 161 11 chr1 152110588 152110762 -45084670 - MLT1B LTR MaLR -8 382 183 1 1745 328 279 30 76 chr1 152111483 152111615 -45083817 + ID_B1 SINE B4 99 224 0 1 1745 184 325 108 0 chr1 152111678 152111761 -45083671 - MIRc SINE MIR -45 223 132 1 1745 225 184 0 0 chr1 152111999 152112048 -45083384 + T-rich Low_complexity Low_complexity 1 49 0 1 1745 3361 80 0 0 chr1 152113203 152113640 -45081792 - L1_Mus1 LINE L1 -9 6558 6122 1 1745 1077 129 11 23 chr1 152114119 152114294 -45081138 + B2_Mm1t SINE B2 3 175 -18 1 1745 378 116 313 26 chr1 152114379 152114494 -45080938 + B2_Mm2 SINE B2 47 194 -1 1 1745 351 0 0 0 chr1 152114597 152114636 -45080796 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1745 1663 273 54 9 chr1 152114653 152115189 -45080243 - MERVL_2A-int LTR ERVL -4568 1193 634 1 1745 1263 254 42 6 chr1 152115196 152115553 -45079879 + ORR1D2 LTR MaLR 1 370 0 1 1745 995 254 78 23 chr1 152115554 152115860 -45079572 + ORR1D2-int LTR MaLR 2 324 -1046 1 1745 25 31 0 0 chr1 152116597 152116629 -45078803 + AT_rich Low_complexity Low_complexity 1 32 0 1 1745 5171 58 5 5 chr1 152116686 152117344 -45078088 - L1Md_F2 LINE L1 -2 6580 5923 1 1745 3264 21 39 0 chr1 152117344 152117725 -45077707 + MTA_Mm LTR MaLR 1 396 0 1 1745 8957 38 5 3 chr1 152117725 152118819 -45076613 + MTA_Mm-int LTR MaLR 1 1096 -2 1 1745 1084 8 0 0 chr1 152118821 152118946 -45076486 + MTA_Mm LTR MaLR 1 125 -271 1 1745 511 347 7 32 chr1 152118958 152119113 -45076319 - RSINE1 SINE B4 0 165 15 1 1745 397 325 98 13 chr1 152119288 152119441 -45075991 - B4A SINE B4 -56 236 71 1 1745 612 261 58 24 chr1 152119869 152120077 -45075355 + B3 SINE B2 2 216 0 1 1745 36689 7 0 0 chr1 152120130 152125563 -45069869 + L1Md_T LINE L1 153 5586 -297 1 1745 9034 5 0 0 chr1 152125563 152126582 -45068850 + L1Md_T LINE L1 5587 6582 0 1 1745 229 206 59 0 chr1 152126598 152126666 -45068766 + L1MC3 LINE L1 7537 7608 -177 1 1745 243 0 0 0 chr1 152126667 152126694 -45068738 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1745 4214 4 0 0 chr1 152126694 152127189 -45068243 + L1Md_A LINE L1 5092 5586 -297 1 1745 9093 1 0 0 chr1 152127189 152128185 -45067247 + L1Md_A LINE L1 5587 6582 0 1 1745 15134 143 29 3 chr1 152128418 152129088 -45066344 + MusHAL1 LINE L1 4 677 -2677 1 1745 200 35 35 0 chr1 152129088 152129117 -45066315 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1745 15134 91 26 34 chr1 152129117 152130513 -45064919 + MusHAL1 LINE L1 677 2086 -1267 1 1745 1188 62 0 0 chr1 152130513 152130659 -45064773 - B1_Mm SINE Alu 0 147 2 1 1745 15134 91 26 34 chr1 152130659 152131766 -45063666 + MusHAL1 LINE L1 2087 3161 -192 1 1745 5719 161 31 84 chr1 152131768 152132813 -45062619 + L1VL4 LINE L1 236 1268 -5370 1 1745 228 35 0 0 chr1 152132813 152132842 -45062590 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1745 5719 92 17 14 chr1 152132842 152133741 -45061691 + L1VL4 LINE L1 1269 2165 -3718 1 1745 31059 74 2 1 chr1 152133727 152139075 -45056357 + L1Md_F2 LINE L1 238 5586 -297 1 1745 7771 60 2 1 chr1 152139076 152140062 -45055370 + L1Md_F2 LINE L1 5588 6574 -8 1 1745 7124 126 37 205 chr1 152140062 152140760 -45054672 + L1_Mm LINE L1 2157 2866 -3017 1 1745 981 94 19 6 chr1 152140760 152140920 -45054512 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 1 1745 7124 126 37 205 chr1 152140920 152141127 -45054305 + L1_Mm LINE L1 2867 3079 -2804 1 1745 2410 138 10 22 chr1 152141127 152141536 -45053896 - RLTR9E LTR ERVK -5 404 1 2 1745 7124 126 37 205 chr1 152141536 152142374 -45053058 + L1_Mm LINE L1 3080 3946 -1937 1 1745 22867 128 53 22 chr1 152142375 152148330 -45047102 + L1_Mus1 LINE L1 416 6567 0 2 1745 7435 79 28 5 chr1 152148487 152149487 -45045945 - RLTR13D5 LTR ERVK 0 1023 1 2 1745 616 245 20 7 chr1 152149513 152149661 -45045771 - B1_Mur4 SINE Alu 0 150 1 2 1745 850 301 73 14 chr1 152149734 152150243 -45045189 + L1MC LINE L1 2288 2826 -3320 2 1745 463 324 53 5 chr1 152150251 152150410 -45045022 + ID_B1 SINE B4 78 247 -45 2 1745 494 80 0 26 chr1 152150418 152150433 -45044999 + (GGA)n Simple_repeat Simple_repeat 3 17 0 2 1745 1430 29 6 0 chr1 152150433 152150608 -45044824 + (GAA)n Simple_repeat Simple_repeat 3 178 0 2 1745 494 80 0 26 chr1 152150608 152150669 -45044763 + (GGA)n Simple_repeat Simple_repeat 3 62 0 2 1745 11476 90 36 8 chr1 152150721 152152601 -45042831 - MusHAL1 LINE L1 -780 1932 1 2 1745 449 271 52 117 chr1 152152756 152152986 -45042446 - B3 SINE B2 0 216 2 2 1745 1053 65 70 6 chr1 152153199 152153355 -45042077 - L1Md_F2 LINE L1 0 6582 6417 2 1745 587 156 10 0 chr1 152153355 152153451 -45041981 - B2_Mm2 SINE B2 -85 110 14 2 1745 1480 26 5 55 chr1 152153570 152153771 -45041661 + L1Md_F3 LINE L1 6392 6582 -2 2 1745 443 282 25 17 chr1 152154097 152154216 -45041216 + ID_B1 SINE B4 99 218 -6 2 1745 190 314 176 0 chr1 152154296 152154398 -45041034 - MIRc SINE MIR -52 216 97 2 1745 678 259 0 0 chr1 152154595 152154726 -45040706 - RSINE1 SINE B4 -33 132 2 2 1745 240 175 35 0 chr1 152155276 152155333 -45040099 - MT2A LTR ERVL 0 533 475 2 1745 1764 267 36 9 chr1 152155363 152155896 -45039536 - MERVL_2A-int LTR ERVL -4581 1180 634 2 1745 1531 224 36 3 chr1 152155903 152156261 -45039171 + ORR1D2 LTR MaLR 1 370 0 2 1745 1040 201 57 32 chr1 152156261 152156508 -45038924 + ORR1D2-int LTR MaLR 1 253 -1117 2 1745 1289 140 126 0 chr1 152156580 152156802 -45038630 - ORR1A1 LTR MaLR -51 295 46 2 1745 430 179 79 71 chr1 152156775 152156901 -45038531 + B1_Mur2 SINE Alu 18 144 -5 2 1745 249 196 0 0 chr1 152156928 152156984 -45038448 + A-rich Low_complexity Low_complexity 1 56 0 2 1745 266 231 15 15 chr1 152158855 152158921 -45036511 - PB1D10 SINE Alu 0 117 52 2 1745 4285 65 16 0 chr1 152158944 152159516 -45035916 + L1_Mus2 LINE L1 5850 6430 -136 2 1745 1002 41 0 0 chr1 152159516 152159639 -45035793 + B1_Mm SINE Alu 25 147 0 2 1745 468 122 0 0 chr1 152160922 152161004 -45034428 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1745 306 290 0 41 chr1 152161021 152161118 -45034314 - RSINE1 SINE B4 -57 108 16 2 1745 301 371 77 28 chr1 152161577 152161824 -45033608 - MIRb SINE MIR -6 262 4 2 1745 347 294 169 11 chr1 152162200 152162389 -45033043 + L1M2 LINE L1 5137 5355 -788 2 1745 461 234 15 59 chr1 152162398 152162534 -45032898 - Lx8 LINE L1 -586 6887 6758 2 1745 499 143 9 19 chr1 152162602 152162709 -45032723 + CT-rich Low_complexity Low_complexity 3 108 0 2 1745 207 69 0 0 chr1 152162710 152162739 -45032693 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2 1745 787 246 45 5 chr1 152162896 152162964 -45032468 + B3 SINE B2 9 79 -137 2 1745 4134 50 42 13 chr1 152162964 152163514 -45031918 - L1Md_F2 LINE L1 0 6582 6017 2 1745 787 246 45 5 chr1 152163514 152163645 -45031787 + B3 SINE B2 80 215 -1 2 1745 285 29 0 0 chr1 152164010 152164044 -45031388 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1745 21 0 0 0 chr1 152164360 152164381 -45031051 + AT_rich Low_complexity Low_complexity 1 21 0 2 1745 424 280 70 5 chr1 152164697 152164884 -45030548 + Lx8 LINE L1 6946 7144 -329 2 1745 707 270 5 48 chr1 152164889 152165066 -45030366 + B3 SINE B2 1 169 -47 2 1745 590 68 11 0 chr1 152165066 152165154 -45030278 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 1745 225 94 0 0 chr1 152165198 152165230 -45030202 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1745 934 155 13 0 chr1 152165669 152165824 -45029608 - URR1A DNA MER1_type 0 226 70 2 1745 440 304 86 20 chr1 152168842 152169040 -45026392 - MIR SINE MIR -10 252 42 2 1745 471 308 48 54 chr1 152169796 152169964 -45025468 + B4A SINE B4 3 169 -123 2 1745 342 0 0 0 chr1 152170042 152170080 -45025352 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1745 7512 72 5 7 chr1 152170080 152171065 -45024367 - RLTR13C1 LTR ERVK 0 983 1 2 1745 23 0 0 0 chr1 152171159 152171182 -45024250 + AT_rich Low_complexity Low_complexity 1 23 0 2 1745 632 258 151 16 chr1 152171194 152171379 -45024053 + ID_B1 SINE B4 7 216 -8 2 1745 226 184 61 0 chr1 152171337 152171386 -45024046 + PB1 SINE Alu 76 127 0 2 1745 201 133 0 0 chr1 152171387 152171417 -45024015 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 2 1745 504 86 0 0 chr1 152171680 152171750 -45023682 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 2 1745 1078 93 0 0 chr1 152171772 152171911 -45023521 - B1_Mus1 SINE Alu -9 139 1 2 1745 942 163 0 0 chr1 152171915 152172056 -45023376 - B1_Mus1 SINE Alu -7 141 1 2 1745 495 0 0 0 chr1 152172272 152172327 -45023105 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 2 1745 425 299 7 34 chr1 152172360 152172509 -45022923 - Lx9 LINE L1 -267 7377 7233 2 1745 205 347 41 8 chr1 152174357 152174479 -45020953 + MIR SINE MIR 118 243 -19 2 218 1737 137 97 69 chr1 152174486 152174847 -45020585 + ORR1C2 LTR MaLR 1 371 -13 2 1746 844 103 204 37 chr1 152175007 152175131 -45020301 + B2_Mm2 SINE B2 3 157 -38 2 1746 405 0 0 0 chr1 152175131 152175176 -45020256 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 1746 844 103 204 37 chr1 152175176 152175213 -45020219 + B2_Mm2 SINE B2 158 191 -4 2 1746 308 250 124 7 chr1 152176428 152176565 -45018867 + L1M5 LINE L1 5167 5319 -827 2 1746 1379 258 56 0 chr1 152176582 152176938 -45018494 - MTE2b LTR MaLR -3 376 1 2 1746 356 75 0 0 chr1 152177332 152177385 -45018047 + B3A SINE B2 2 54 -144 2 1746 24 32 0 0 chr1 152177578 152177609 -45017823 + AT_rich Low_complexity Low_complexity 1 31 0 2 1746 820 156 8 0 chr1 152177672 152177800 -45017632 - B2_Mm2 SINE B2 -65 130 2 2 1746 274 250 196 0 chr1 152179248 152179340 -45016092 + PB1D10 SINE Alu 3 112 -5 2 1746 369 268 12 0 chr1 152179701 152179783 -45015649 - MER5A DNA MER1_type -29 160 78 2 1746 222 37 0 0 chr1 152181245 152181272 -45014160 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1746 737 174 7 35 chr1 152181273 152181416 -45014016 + B1_Mus1 SINE Alu 1 139 -9 2 1746 216 0 0 0 chr1 152181416 152181440 -45013992 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1746 1009 45 97 0 chr1 152181752 152181886 -45013546 - B1_Mus1 SINE Alu 0 148 2 2 1746 201 162 27 0 chr1 152182617 152182654 -45012778 + CT-rich Low_complexity Low_complexity 1 38 0 2 1746 234 0 0 0 chr1 152182659 152182685 -45012747 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1746 953 24 87 0 chr1 152182697 152182824 -45012608 - B1_Mm SINE Alu 0 147 10 2 1746 332 118 139 38 chr1 152184128 152184207 -45011225 - Lx8 LINE L1 -5 7468 7382 2 1746 340 326 65 22 chr1 152184582 152184767 -45010665 + MIR SINE MIR 70 262 0 2 1746 311 83 0 0 chr1 152184946 152184994 -45010438 + Lx LINE L1 6592 6639 -15 2 1746 37768 13 8 11 chr1 152184994 152190380 -45005052 + L1Md_A LINE L1 214 5586 -297 2 1746 8715 15 1 0 chr1 152190380 152191374 -45004058 + L1Md_A LINE L1 5587 6581 -1 2 1746 24 53 0 0 chr1 152191375 152191413 -45004019 + AT_rich Low_complexity Low_complexity 1 38 0 2 1746 587 333 18 12 chr1 152191714 152191878 -45003554 - MER20 DNA MER1_type -53 166 2 2 1746 182 359 0 0 chr1 152191930 152191983 -45003449 + L2 LINE L2 2687 2739 -680 2 1746 5959 30 3 4 chr1 152192290 152193001 -45002431 - L1Md_F2 LINE L1 -4 6578 5869 2 1746 221 354 66 96 chr1 152193107 152193304 -45002128 + B4 SINE B4 33 223 -69 2 1746 309 295 0 25 chr1 152193227 152193307 -45002125 + PB1D10 SINE Alu 38 115 -2 2 1746 1459 241 66 11 chr1 152193713 152194062 -45001370 - ORR1D2 LTR MaLR 0 370 3 2 1746 458 297 94 63 chr1 152194106 152194329 -45001103 - Tigger5 DNA MER2_type -2169 237 8 2 1746 25 83 0 0 chr1 152194820 152194880 -45000552 + AT_rich Low_complexity Low_complexity 1 60 0 2 1746 797 297 45 0 chr1 152195362 152195564 -44999868 + B3 SINE B2 6 216 0 2 1746 444 260 26 83 chr1 152195716 152195909 -44999523 + B3A SINE B2 1 182 -16 2 1746 492 252 110 55 chr1 152196539 152196703 -44998729 + MTEb LTR MaLR 206 378 -1 2 1746 458 268 79 0 chr1 152196708 152196821 -44998611 + MTEb-int LTR MaLR 6 128 -1452 2 1746 714 210 100 89 chr1 152196821 152197077 -44998355 - MTD LTR MaLR 0 419 156 2 1746 232 211 0 0 chr1 152197054 152197092 -44998340 - RLTR28 LTR ERVL -17 507 470 2 1746 2729 161 64 31 chr1 152197092 152197549 -44997883 + RLTR20D LTR ERVK 1 464 -104 2 1746 450 0 0 0 chr1 152197549 152197599 -44997833 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1746 2729 161 64 31 chr1 152197599 152197691 -44997741 + RLTR20D LTR ERVK 465 567 -1 2 1746 2313 144 52 54 chr1 152197691 152198167 -44997265 - RLTR28 LTR ERVL -49 475 1 2 1746 309 244 70 0 chr1 152198168 152198254 -44997178 - MTD LTR MaLR -216 203 112 2 1746 2894 255 73 22 chr1 152198322 152199131 -44996301 + MTEb-int LTR MaLR 133 982 -598 2 1746 264 167 0 0 chr1 152199181 152199253 -44996179 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1746 255 356 123 28 chr1 152199695 152199906 -44995526 + MLT1G1 LTR MaLR 251 481 -98 2 1746 1666 160 67 59 chr1 152200112 152200532 -44994900 + RLTR25A LTR ERVK 372 889 -214 2 1746 267 246 81 74 chr1 152200562 152200711 -44994721 + RLTR25B LTR ERVK 742 891 -137 2 1746 280 274 0 0 chr1 152200712 152200785 -44994647 + GA-rich Low_complexity Low_complexity 1 73 0 2 1746 477 0 0 0 chr1 152200948 152201001 -44994431 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 2 1746 288 244 76 65 chr1 152201004 152201096 -44994336 - B1F SINE Alu -53 96 4 2 1746 23 0 0 0 chr1 152201168 152201191 -44994241 + AT_rich Low_complexity Low_complexity 1 23 0 3 1746 35967 68 1 13 chr1 152201481 152207621 -44987811 - L1Md_F2 LINE L1 -12 6570 511 3 1746 180 0 0 0 chr1 152207623 152207643 -44987789 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1746 208 135 0 0 chr1 152207952 152207989 -44987443 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 3 1746 259 329 0 0 chr1 152210315 152210397 -44985035 + (CATA)n Simple_repeat Simple_repeat 3 84 0 3 1746 1232 54 0 0 chr1 152210803 152210950 -44984482 + B1_Mus2 SINE Alu 1 147 0 3 1746 24 32 0 0 chr1 152211017 152211048 -44984384 + AT_rich Low_complexity Low_complexity 1 31 0 3 1746 863 242 37 5 chr1 152211076 152211267 -44984165 - B3 SINE B2 -13 203 7 3 1746 348 265 162 0 chr1 152211422 152211558 -44983874 - RSINE1 SINE B4 -4 161 4 3 1746 198 0 0 0 chr1 152211764 152211786 -44983646 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1746 280 284 35 35 chr1 152212069 152212182 -44983250 + PB1D7 SINE Alu 1 113 -7 3 1746 296 365 39 62 chr1 152212194 152212372 -44983060 + ID_B1 SINE B4 3 176 -48 3 1746 228 216 20 0 chr1 152212340 152212391 -44983041 + PB1D10 SINE Alu 64 115 -2 3 1746 913 57 0 0 chr1 152212398 152212520 -44982912 + B1_Mm SINE Alu 2 123 -24 3 1746 309 186 110 88 chr1 152212436 152212519 -44982913 + RLTR25B LTR ERVK 441 526 -502 3 1746 279 225 26 78 chr1 152212519 152212635 -44982797 + ID4 SINE ID 3 111 -41 3 1746 231 269 101 61 chr1 152213183 152213282 -44982150 - MIRc SINE MIR -111 157 55 3 1746 26 0 0 0 chr1 152213850 152213876 -44981556 + AT_rich Low_complexity Low_complexity 1 26 0 3 1746 895 278 58 75 chr1 152214180 152214526 -44980906 - MLT1B LTR MaLR -46 344 5 3 1746 3607 88 60 2 chr1 152214689 152215227 -44980205 - Lx2 LINE L1 -1 6996 6428 3 1746 1546 121 0 4 chr1 152215227 152215468 -44979964 + Lx2 LINE L1 6181 6420 -577 3 1746 343 213 248 9 chr1 152215512 152215621 -44979811 + B1F2 SINE Alu 2 136 -13 3 1746 22 0 0 0 chr1 152215627 152215649 -44979783 + AT_rich Low_complexity Low_complexity 1 22 0 3 1746 7689 57 12 1 chr1 152215657 152216696 -44978736 - L1_Mus1 LINE L1 0 6567 5519 3 1746 2728 75 0 8 chr1 152217179 152217554 -44977878 + L1_Mus4 LINE L1 6265 6636 0 3 1746 627 14 0 0 chr1 152217593 152217665 -44977767 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 3 1746 210 254 0 0 chr1 152217729 152217788 -44977644 + A-rich Low_complexity Low_complexity 1 59 0 3 1746 372 224 214 0 chr1 152218050 152218148 -44977284 + URR1A DNA MER1_type 1 119 -107 3 1746 1352 71 22 0 chr1 152218272 152218455 -44976977 + B2_Mm1t SINE B2 3 189 -4 3 1746 252 0 0 0 chr1 152219027 152219055 -44976377 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1746 220 312 53 60 chr1 152219428 152219578 -44975854 + L4 LINE RTE 1519 1667 -362 3 1746 345 274 184 8 chr1 152219702 152219827 -44975605 - B4 SINE B4 -143 149 3 3 1746 1649 295 76 13 chr1 152220669 152221291 -44974141 + Lx8 LINE L1 6508 7168 -305 3 1746 736 131 57 166 chr1 152221424 152221635 -44973797 + B2_Mm2 SINE B2 1 188 -7 3 1746 567 277 106 26 chr1 152223394 152223583 -44971849 - B3 SINE B2 -3 213 10 3 1746 242 295 106 9 chr1 152223828 152223941 -44971491 - Lx7 LINE L1 -757 6939 6816 3 1746 364 274 119 147 chr1 152223950 152224020 -44971412 - Lx7 LINE L1 -988 6708 6662 3 1746 4848 41 3 2 chr1 152224020 152224608 -44970824 - L1_Mus2 LINE L1 0 6566 5978 3 1746 364 274 119 147 chr1 152224608 152224755 -44970677 - Lx7 LINE L1 -1035 6661 6497 3 1746 741 288 32 32 chr1 152224764 152225015 -44970417 + Lx7 LINE L1 7061 7311 -385 3 1746 651 257 56 20 chr1 152225024 152225219 -44970213 - B3 SINE B2 -14 202 1 3 1746 787 203 7 13 chr1 152225274 152225287 -44970145 - B1_Mur3 SINE Alu 0 149 138 3 1746 321 26 0 0 chr1 152225287 152225325 -44970107 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1746 787 203 7 13 chr1 152225325 152225461 -44969971 - B1_Mur3 SINE Alu -12 137 1 3 1746 597 248 8 0 chr1 152225972 152226093 -44969339 - B3 SINE B2 -92 124 3 3 1746 851 264 51 0 chr1 152226177 152226374 -44969058 + B3 SINE B2 9 215 -1 3 1746 23 86 0 0 chr1 152226538 152226596 -44968836 + AT_rich Low_complexity Low_complexity 1 58 0 3 1746 1398 74 11 11 chr1 152226811 152227002 -44968430 + B2_Mm2 SINE B2 1 191 -4 3 1746 940 85 62 0 chr1 152227686 152227816 -44967616 + B1_Mus1 SINE Alu 2 139 -9 3 1746 255 154 15 30 chr1 152227828 152227895 -44967537 + A-rich Low_complexity Low_complexity 1 66 0 3 1746 421 335 93 10 chr1 152227925 152228130 -44967302 + MER58A DNA MER1_type 3 224 0 3 1746 253 187 11 130 chr1 152228373 152228465 -44966967 + MT2B LTR ERVL 155 235 -366 3 1746 456 230 53 9 chr1 152228385 152228499 -44966933 + PB1D9 SINE Alu 1 119 -1 3 1746 1074 38 0 0 chr1 152230841 152230972 -44964460 + B1_Mus1 SINE Alu 5 135 -13 3 1746 205 51 51 0 chr1 152230972 152231011 -44964421 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 3 1746 730 154 96 0 chr1 152231162 152231298 -44964134 - B1_Mur4 SINE Alu 0 150 2 3 1746 273 300 121 23 chr1 152232254 152232428 -44963004 - MTD LTR MaLR -228 191 1 3 1746 409 303 44 29 chr1 152233073 152233209 -44962223 + RSINE1 SINE B4 4 141 -24 3 1746 24 0 0 0 chr1 152233260 152233284 -44962148 + AT_rich Low_complexity Low_complexity 1 24 0 3 1746 2191 144 64 11 chr1 152234738 152235111 -44960321 + ORR1B1 LTR MaLR 1 393 -1 3 1746 227 222 0 0 chr1 152235151 152235196 -44960236 - RMER1C Other Other -150 1192 1148 3 1746 268 233 0 32 chr1 152236039 152236101 -44959331 + ID4_ SINE ID 6 65 -18 3 1746 266 391 24 82 chr1 152236101 152236245 -44959187 + ID_B1 SINE B4 6 199 -25 3 1746 236 196 0 21 chr1 152236211 152236258 -44959174 + PB1D10 SINE Alu 56 101 -16 3 1746 222 286 75 60 chr1 152237002 152237069 -44958363 - ID SINE ID -155 69 2 3 1746 1369 63 21 16 chr1 152237670 152237862 -44957570 - B2_Mm2 SINE B2 -2 193 1 3 1746 1176 42 21 0 chr1 152237908 152238052 -44957380 + B1_Mus1 SINE Alu 2 148 0 3 1746 625 297 15 45 chr1 152238074 152238275 -44957157 + B3A SINE B2 1 195 -3 3 1746 423 290 21 21 chr1 152238309 152238450 -44956982 + B1F SINE Alu 1 141 -8 3 1746 482 324 61 24 chr1 152238820 152239032 -44956400 - MIR SINE MIR -3 259 40 3 1746 1176 41 0 20 chr1 152241483 152241633 -44953799 + B1_Mus1 SINE Alu 1 147 -1 3 1746 1774 203 54 49 chr1 152242612 152242806 -44952626 + RMER6B LTR ERVK 15 196 -265 3 1746 1135 81 0 13 chr1 152242806 152242956 -44952476 + B1_Mus1 SINE Alu 1 148 0 3 1746 1774 203 54 49 chr1 152242956 152243206 -44952226 + RMER6B LTR ERVK 197 460 -1 3 1746 203 250 19 19 chr1 152243595 152243648 -44951784 + MIRb SINE MIR 21 73 -195 3 1746 1097 55 0 40 chr1 152244004 152244154 -44951278 - B1_Mus1 SINE Alu 0 148 5 3 1746 1207 54 0 0 chr1 152244644 152244791 -44950641 - B1_Mus1 SINE Alu 0 148 2 3 1746 633 274 36 62 chr1 152244832 152245028 -44950404 + B3A SINE B2 1 182 -34 3 1746 340 308 8 114 chr1 152245067 152245199 -44950233 - PB1D7 SINE Alu -2 118 1 3 1746 234 0 0 0 chr1 152247115 152247141 -44948291 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1746 761 257 156 60 chr1 152247143 152247953 -44947479 + L1MA9 LINE L1 5014 5900 -412 3 1746 324 325 118 55 chr1 152248291 152248545 -44946887 + B4 SINE B4 1 270 -22 3 1746 600 229 56 21 chr1 152249648 152249791 -44945641 + B1_Mur3 SINE Alu 2 149 0 3 1746 382 279 122 53 chr1 152249802 152249991 -44945441 - Lx8 LINE L1 -198 7275 7074 3 1746 31 26 0 0 chr1 152250958 152250996 -44944436 + AT_rich Low_complexity Low_complexity 1 38 0 3 1746 338 170 0 0 chr1 152251467 152251520 -44943912 - MER57D LTR ERV1 -354 57 5 3 1746 258 312 104 24 chr1 152252074 152252238 -44943194 - MER57A-int LTR ERV1 -1125 5062 4886 3 1746 281 288 27 73 chr1 152253717 152253867 -44941565 - B1_Mur3 SINE Alu 0 149 7 3 1746 482 274 48 16 chr1 152253753 152253879 -44941553 - ID_B1 SINE B4 -19 205 76 3 1746 270 306 142 7 chr1 152255385 152255533 -44939899 - MER2 DNA MER2_type -175 170 3 3 1746 429 298 29 68 chr1 152256749 152256954 -44938478 + B3A SINE B2 2 198 0 3 1746 491 45 0 15 chr1 152258903 152258970 -44936462 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1746 246 284 144 19 chr1 152259461 152259586 -44935846 - PB1D10 SINE Alu -3 146 4 3 1746 1030 95 7 26 chr1 152259721 152259872 -44935560 + B1_Mus1 SINE Alu 1 148 0 3 1746 464 221 120 42 chr1 152261244 152261386 -44934046 - RSINE1 SINE B4 0 165 13 3 1746 450 236 38 0 chr1 152262208 152262314 -44933118 - B1F1 SINE Alu -6 143 34 3 1746 2144 180 67 17 chr1 152262328 152262820 -44932612 - RLTR31A_Mm LTR ERVK 0 553 1 3 1746 320 306 120 0 chr1 152262830 152262938 -44932494 - B1F1 SINE Alu -21 128 8 3 1746 21 100 0 0 chr1 152263001 152263071 -44932361 + AT_rich Low_complexity Low_complexity 1 70 0 3 1746 485 233 119 49 chr1 152264098 152264283 -44931149 - B3A SINE B2 0 198 1 3 1746 26 30 0 0 chr1 152264887 152264920 -44930512 + AT_rich Low_complexity Low_complexity 1 33 0 3 1746 1791 257 143 15 chr1 152265299 152266293 -44929139 - Lx8 LINE L1 0 7473 6354 3 1746 394 293 85 6 chr1 152266321 152266486 -44928946 - L1MEc LINE L1 -5612 788 611 3 1746 297 0 0 0 chr1 152266641 152266674 -44928758 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1746 292 246 14 14 chr1 152266677 152266751 -44928681 - L1MEc LINE L1 -6056 344 271 3 1746 1350 215 149 3 chr1 152267499 152267824 -44927608 - ORR1C2 LTR MaLR -8 413 3 3 1746 501 265 37 5 chr1 152267827 152267958 -44927474 - B1_Mur1 SINE Alu -17 132 1 3 1746 22 0 0 0 chr1 152268136 152268158 -44927274 + AT_rich Low_complexity Low_complexity 1 22 0 4 1746 244 82 48 32 chr1 152268400 152268463 -44926969 + CT-rich Low_complexity Low_complexity 1 64 0 4 1746 505 289 52 0 chr1 152268464 152268599 -44926833 - B1_Mur1 SINE Alu -7 142 1 4 1746 363 250 43 11 chr1 152270429 152270522 -44924910 + B4A SINE B4 193 288 -4 4 1746 243 0 0 0 chr1 152270532 152270559 -44924873 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1746 318 280 81 36 chr1 152271305 152271416 -44924016 + PB1D10 SINE Alu 1 116 -1 4 1746 3577 189 68 71 chr1 152272959 152273945 -44921487 + RLTR13C1 LTR ERVK 1 983 0 4 1746 1161 62 0 0 chr1 152274372 152274518 -44920914 + B1_Mm SINE Alu 2 147 0 4 1746 374 84 68 40 chr1 152274570 152274644 -44920788 + L1Md_F3 LINE L1 6501 6576 -8 4 1746 416 319 158 7 chr1 152274786 152274925 -44920507 + RSINE1 SINE B4 6 165 0 4 1746 293 232 157 29 chr1 152275429 152275531 -44919901 - B1F SINE Alu -11 138 24 4 1746 187 125 62 0 chr1 152275925 152275973 -44919459 + GA-rich Low_complexity Low_complexity 2 52 0 4 1746 333 118 0 0 chr1 152276792 152276843 -44918589 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1746 370 250 88 0 chr1 152276852 152276932 -44918500 - B1_Mus2 SINE Alu -59 88 2 4 1746 291 317 110 0 chr1 152276860 152276942 -44918490 - B4 SINE B4 -125 167 77 4 1746 252 283 15 118 chr1 152277122 152277258 -44918174 - MTEa LTR MaLR -257 122 1 4 1746 2019 59 0 0 chr1 152277967 152278220 -44917212 + L1_Mus1 LINE L1 6315 6567 0 4 1746 692 285 38 12 chr1 152278506 152278666 -44916766 - B3 SINE B2 -50 166 3 4 1746 234 0 0 0 chr1 152279018 152279044 -44916388 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1746 682 180 47 39 chr1 152279087 152279214 -44916218 - B1_Mur3 SINE Alu -20 129 2 4 1746 878 180 85 30 chr1 152280222 152280422 -44915010 + B3 SINE B2 1 211 -5 4 1746 242 158 0 0 chr1 152281265 152281303 -44914129 - PB1D10 SINE Alu -33 84 47 4 1746 255 286 40 30 chr1 152281773 152281874 -44913558 + PB1D10 SINE Alu 10 111 -6 4 1746 2664 59 119 11 chr1 152281876 152282237 -44913195 - MTB LTR MaLR 0 400 1 4 1746 306 0 0 0 chr1 152282344 152282378 -44913054 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1746 678 243 133 72 chr1 152283074 152283269 -44912163 - B3 SINE B2 -5 211 5 4 1746 26 74 0 0 chr1 152283469 152283523 -44911909 + AT_rich Low_complexity Low_complexity 1 54 0 4 1746 189 0 0 0 chr1 152284677 152284698 -44910734 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1746 1214 41 0 7 chr1 152284698 152284846 -44910586 - B1_Mus2 SINE Alu 0 147 1 4 1746 393 288 43 35 chr1 152284869 152284984 -44910448 - PB1D10 SINE Alu 0 117 2 4 1746 422 254 145 45 chr1 152285597 152285956 -44909476 - Lx9 LINE L1 -4 7640 7246 4 1746 220 234 15 15 chr1 152286340 152286405 -44909027 + (ATG)n Simple_repeat Simple_repeat 3 67 0 4 1746 379 333 8 42 chr1 152286729 152286848 -44908584 - PB1D10 SINE Alu -2 115 1 4 1746 207 0 0 0 chr1 152287064 152287087 -44908345 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1746 338 285 8 8 chr1 152287196 152287327 -44908105 + (ATG)n Simple_repeat Simple_repeat 3 133 0 4 1746 187 278 0 0 chr1 152287806 152287842 -44907590 + MIRc SINE MIR 165 200 -68 4 1746 820 241 33 33 chr1 152288150 152288364 -44907068 + B3 SINE B2 2 215 -1 4 1746 570 329 66 12 chr1 152288714 152288880 -44906552 + B3A SINE B2 2 176 -22 4 1746 438 213 85 0 chr1 152289027 152289121 -44906311 + ID_B1 SINE B4 106 207 -17 4 1746 247 277 37 65 chr1 152289028 152289136 -44906296 + MT2B LTR ERVL 190 294 -307 4 1746 24 32 0 0 chr1 152290116 152290147 -44905285 + AT_rich Low_complexity Low_complexity 1 31 0 4 1746 32 0 0 0 chr1 152291790 152291822 -44903610 + AT_rich Low_complexity Low_complexity 1 32 0 4 1746 1418 200 69 56 chr1 152291830 152292206 -44903226 - ORR1C2 LTR MaLR -3 381 1 4 1746 1115 64 0 28 chr1 152292363 152292507 -44902925 + B1_Mm SINE Alu 2 141 -6 4 1746 216 0 0 0 chr1 152292507 152292531 -44902901 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 4 1746 41 21 0 0 chr1 152294867 152294915 -44900517 + AT_rich Low_complexity Low_complexity 1 48 0 4 1746 231 343 171 17 chr1 152295870 152296051 -44899381 - L2 LINE L2 -389 3030 2822 4 1746 180 0 0 0 chr1 152296628 152296648 -44898784 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1746 24 0 0 0 chr1 152297407 152297431 -44898001 + AT_rich Low_complexity Low_complexity 1 24 0 4 1746 439 267 18 10 chr1 152299735 152299845 -44895587 - B1_Mur3 SINE Alu -38 112 1 4 1746 293 343 9 29 chr1 152299877 152299982 -44895450 - RSINE1 SINE B4 0 165 63 4 1746 284 353 29 10 chr1 152299972 152300075 -44895357 - RSINE1 SINE B4 -58 107 3 4 1746 198 103 0 0 chr1 152304682 152304711 -44890721 + (GGA)n Simple_repeat Simple_repeat 2 30 0 4 1747 486 0 0 0 chr1 152306745 152306799 -44888633 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1747 223 324 97 45 chr1 152309662 152309770 -44885662 - MIRb SINE MIR -23 245 128 4 1747 1028 96 14 0 chr1 152309770 152309916 -44885516 + B1_Mur3 SINE Alu 2 149 0 4 1747 223 324 97 45 chr1 152309916 152309962 -44885470 - MIRb SINE MIR -141 127 83 4 1747 267 258 0 0 chr1 152309968 152310030 -44885402 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 4 1747 435 106 0 0 chr1 152310836 152310902 -44884530 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1747 748 309 20 8 chr1 152310914 152311159 -44884273 - B4A SINE B4 -44 248 1 4 1747 282 320 37 37 chr1 152312043 152312150 -44883282 + U6 snRNA snRNA 1 107 0 4 1747 28 0 0 0 chr1 152312901 152312929 -44882503 + AT_rich Low_complexity Low_complexity 1 28 0 4 1747 375 290 18 36 chr1 152313911 152314022 -44881410 + PB1 SINE Alu 8 116 -11 4 1747 243 0 0 0 chr1 152314022 152314049 -44881383 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1747 526 342 114 22 chr1 152315497 152315724 -44879708 - B4A SINE B4 -21 271 24 4 1747 240 143 11 56 chr1 152316779 152316868 -44878564 + (TATG)n Simple_repeat Simple_repeat 2 86 0 4 1747 681 113 47 9 chr1 152316885 152317106 -44878326 + (TG)n Simple_repeat Simple_repeat 1 229 0 4 1747 1107 198 9 0 chr1 152317911 152318123 -44877309 - B3 SINE B2 0 216 3 4 1747 400 287 73 8 chr1 152318133 152318256 -44877176 - B1F SINE Alu 0 149 19 4 1747 240 311 70 49 chr1 152318256 152318275 -44877157 - ID_B1 SINE B4 0 224 80 4 1747 325 332 112 27 chr1 152318912 152319142 -44876290 - MIR SINE MIR -6 262 15 4 1747 516 297 29 14 chr1 152319264 152319404 -44876028 - B3A SINE B2 -55 143 2 4 1747 297 75 0 0 chr1 152319622 152319662 -44875770 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1747 268 274 146 10 chr1 152320469 152320572 -44874860 + PB1D10 SINE Alu 1 117 0 4 1747 934 207 56 15 chr1 152320574 152320770 -44874662 + B3 SINE B2 6 209 -7 4 1747 573 158 0 0 chr1 152320771 152320872 -44874560 + (CATATA)n Simple_repeat Simple_repeat 6 106 0 4 1747 689 273 150 46 chr1 152320874 152321200 -44874232 + RLTR9A LTR ERVK 1 360 -8 4 1747 2727 122 83 57 chr1 152321524 152322030 -44873402 - MURVY-LTR LTR ERV1 0 519 1 4 1747 677 175 54 31 chr1 152322330 152322460 -44872972 + B1_Mur4 SINE Alu 1 133 -17 4 1747 623 253 7 14 chr1 152322860 152323008 -44872424 + B1F1 SINE Alu 1 147 -2 4 1747 527 286 70 21 chr1 152323033 152323219 -44872213 + ID_B1 SINE B4 19 213 -11 4 1747 314 215 0 12 chr1 152324035 152324115 -44871317 + C-rich Low_complexity Low_complexity 3 81 0 4 1747 325 102 17 17 chr1 152324378 152324438 -44870994 + (TAA)n Simple_repeat Simple_repeat 2 61 0 4 1747 243 0 0 0 chr1 152325425 152325452 -44869980 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1747 465 299 69 7 chr1 152326100 152326245 -44869187 + RSINE1 SINE B4 4 157 -8 4 1747 4399 53 3 38 chr1 152326596 152327180 -44868252 - LTRIS2 LTR ERV1 0 564 1 4 1747 24 53 0 0 chr1 152328540 152328578 -44866854 + AT_rich Low_complexity Low_complexity 1 38 0 4 1747 5092 72 0 19 chr1 152328870 152329554 -44865878 - L1Md_F2 LINE L1 0 6582 5912 4 1747 243 70 33 50 chr1 152330074 152330134 -44865298 + A-rich Low_complexity Low_complexity 2 60 0 4 1747 510 262 0 0 chr1 152331984 152332091 -44863341 - RSINE1 SINE B4 -56 109 3 4 1747 474 317 6 52 chr1 152332568 152332741 -44862691 + MLT1A0 LTR MaLR 1 165 -200 4 1747 342 91 0 0 chr1 152332901 152332956 -44862476 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1747 339 25 0 0 chr1 152332966 152333006 -44862426 + (CTTG)n Simple_repeat Simple_repeat 3 42 0 4 1747 369 0 0 0 chr1 152333446 152333487 -44861945 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 4 1747 763 124 80 21 chr1 152334083 152334261 -44861171 + URR1B DNA MER1_type 1 218 -7 4 1747 800 278 95 20 chr1 152334517 152334822 -44860610 + RMER5 LTR ERV1 205 532 -2 4 1747 482 203 0 6 chr1 152335592 152335751 -44859681 + (CA)n Simple_repeat Simple_repeat 2 159 0 4 1747 261 186 0 0 chr1 152335820 152335890 -44859542 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1747 4493 80 19 2 chr1 152336656 152337271 -44858161 - L1_Mus3 LINE L1 -4 6634 6009 4 1747 1196 68 6 0 chr1 152337546 152337709 -44857723 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 4 1747 866 263 149 11 chr1 152338315 152338840 -44856592 - L1MA4A LINE L1 -1199 5445 4911 4 1747 414 348 5 22 chr1 152338808 152338993 -44856439 - L1MA4A LINE L1 -1952 4689 4508 4 1747 2250 195 67 8 chr1 152339040 152339532 -44855900 - Lx5 LINE L1 0 7050 6530 5 1747 935 266 76 122 chr1 152339532 152339926 -44855506 - MTEa LTR MaLR -3 376 1 5 1747 304 283 92 21 chr1 152340045 152340186 -44855246 - L1M4 LINE L1 -352 5826 5676 5 1747 552 283 72 6 chr1 152340217 152340384 -44855048 - B3A SINE B2 -18 180 3 5 1747 268 329 0 40 chr1 152340395 152340471 -44854961 - ID4_ SINE ID 0 83 11 5 1747 319 296 97 66 chr1 152340486 152340775 -44854657 - L1M4 LINE L1 -611 5563 5266 5 1747 260 312 0 0 chr1 152340782 152340875 -44854557 - L1MA4A LINE L1 -6422 120 28 4 1747 396 0 0 0 chr1 152340955 152340999 -44854433 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1747 1081 87 7 0 chr1 152340999 152341137 -44854295 - B1_Mur4 SINE Alu -10 140 2 5 1747 180 0 0 0 chr1 152341203 152341223 -44854209 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1747 911 158 14 0 chr1 152341223 152341369 -44854063 - B1_Mus1 SINE Alu 0 148 1 5 1747 183 42 0 0 chr1 152341660 152341684 -44853748 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1747 23 0 0 0 chr1 152342117 152342140 -44853292 + AT_rich Low_complexity Low_complexity 1 23 0 5 1747 291 346 10 0 chr1 152343144 152343245 -44852187 + CT-rich Low_complexity Low_complexity 2 103 0 5 1747 1020 132 0 0 chr1 152343551 152343717 -44851715 + (TTTC)n Simple_repeat Simple_repeat 1 166 0 5 1747 314 289 22 0 chr1 152343934 152344024 -44851408 - MTEa LTR MaLR 0 379 288 5 1747 266 321 64 9 chr1 152344139 152344249 -44851183 - MTEa LTR MaLR -235 124 9 5 1747 237 335 64 69 chr1 152344286 152344459 -44850973 - MER74B LTR ERVL -168 454 283 5 1747 349 280 39 85 chr1 152344450 152344579 -44850853 - MER74B LTR ERVL -445 177 55 5 1747 1578 295 79 106 chr1 152345148 152345979 -44849453 + Lx8 LINE L1 6100 6908 -565 5 1747 1780 300 46 8 chr1 152346001 152346630 -44848802 - Lx8 LINE L1 -519 6954 6302 5 1747 22 0 0 0 chr1 152346707 152346729 -44848703 + AT_rich Low_complexity Low_complexity 1 22 0 5 1747 515 346 16 30 chr1 152347476 152347780 -44847652 - L1MD LINE L1 -577 5665 5366 5 1747 585 22 22 33 chr1 152348306 152348398 -44847034 - L1Md_F3 LINE L1 -1 6583 6493 5 1747 27 0 0 0 chr1 152348440 152348467 -44846965 + AT_rich Low_complexity Low_complexity 1 27 0 5 1747 520 180 70 35 chr1 152348472 152348587 -44846845 - B1_Mus1 SINE Alu -21 127 9 5 1747 245 236 0 27 chr1 152348751 152348825 -44846607 - L1MD LINE L1 -855 5291 5220 5 1747 29 0 0 0 chr1 152349105 152349134 -44846298 + AT_rich Low_complexity Low_complexity 1 29 0 5 1747 970 129 0 20 chr1 152349266 152349416 -44846016 + B1_Mur3 SINE Alu 1 147 -2 5 1747 225 0 0 0 chr1 152349472 152349497 -44845935 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1747 243 179 36 0 chr1 152349498 152349554 -44845878 - L1MA4A LINE L1 -123 6180 6123 5 1747 952 291 81 22 chr1 152350799 152351341 -44844091 + L1MA5 LINE L1 5717 6290 -10 5 1747 296 306 113 1 chr1 152351963 152352127 -44843305 - MLT1C LTR MaLR -81 424 223 5 1747 598 286 42 42 chr1 152352197 152352387 -44843045 - MER67B LTR ERV1 0 661 472 5 1747 250 360 131 11 chr1 152353224 152353415 -44842017 + L2b LINE L2 3161 3374 -1 5 1747 636 194 21 14 chr1 152353465 152353606 -44841826 - Lx6 LINE L1 -5 7455 7314 5 1747 297 254 18 35 chr1 152353695 152353809 -44841623 - L1MC LINE L1 -588 5745 5634 5 1747 907 191 93 22 chr1 152353867 152354049 -44841383 - B3 SINE B2 -8 208 14 5 1747 420 294 148 52 chr1 152354051 152354342 -44841090 - L1MC LINE L1 -742 5591 5273 5 1747 415 225 0 84 chr1 152354898 152354916 -44840516 + MT2B LTR ERVL 150 156 -445 5 1747 637 199 76 8 chr1 152354916 152355048 -44840384 + B1_Mus1 SINE Alu 1 141 -7 5 1747 566 266 214 38 chr1 152355060 152355373 -44840059 - RLTR9A LTR ERVK 0 368 1 5 1747 300 161 32 0 chr1 152355373 152355434 -44839998 + ORR1B1-int LTR MaLR 794 856 -653 5 1747 703 238 0 20 chr1 152355691 152355837 -44839595 + RSINE1 SINE B4 1 143 -22 5 1747 242 250 0 0 chr1 152356046 152356098 -44839334 + B1F SINE Alu 30 81 -68 5 1747 216 86 0 0 chr1 152356382 152356417 -44839015 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1747 203 360 23 68 chr1 152356629 152356805 -44838627 + MIR3 SINE MIR 30 197 -11 5 1747 198 71 0 0 chr1 152356863 152356891 -44838541 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 5 1747 710 125 108 0 chr1 152356893 152357013 -44838419 - B1_Mus2 SINE Alu -5 142 10 5 1747 1474 292 45 2 chr1 152357274 152357761 -44837671 + Lx8 LINE L1 6734 7241 -232 5 1747 591 230 7 23 chr1 152357771 152357904 -44837528 + B3 SINE B2 5 133 -62 5 1747 246 62 0 0 chr1 152357904 152357936 -44837496 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1747 526 258 48 53 chr1 152357936 152357990 -44837442 + B2_Mm2 SINE B2 134 191 -4 5 1747 414 262 54 23 chr1 152358466 152358595 -44836837 + MIR SINE MIR 108 240 -22 5 1747 237 65 0 0 chr1 152359932 152359963 -44835469 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 5 1747 2617 223 60 17 chr1 152360091 152360512 -44834920 + Lx9 LINE L1 6483 6923 -721 5 1747 1854 127 165 6 chr1 152360512 152360852 -44834580 + ORR1B1 LTR MaLR 1 394 0 5 1747 2617 223 60 17 chr1 152360852 152361078 -44834354 + Lx9 LINE L1 6924 7158 -486 5 1747 3104 60 5 22 chr1 152361114 152361521 -44833911 - MTB LTR MaLR 0 400 1 5 1747 420 20 0 0 chr1 152361596 152361645 -44833787 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1747 261 0 0 0 chr1 152361645 152361673 -44833759 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1747 1006 311 43 32 chr1 152362189 152362630 -44832802 + MLT2B4 LTR ERVL 16 464 0 5 1747 231 382 94 72 chr1 152362654 152362877 -44832555 + MamGypLTR1b LTR Gypsy 388 615 -167 5 1747 294 125 0 0 chr1 152363159 152363207 -44832225 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 5 1747 286 314 114 34 chr1 152363681 152363856 -44831576 - MER53 DNA hAT -3 190 2 5 1747 606 342 46 28 chr1 152363935 152364349 -44831083 - MLT1D LTR MaLR -22 483 26 5 1747 353 314 22 22 chr1 152364759 152364896 -44830536 + CT-rich Low_complexity Low_complexity 4 140 0 5 1747 227 281 225 0 chr1 152364901 152364990 -44830442 - B1F2 SINE Alu -7 142 34 5 1747 423 38 0 0 chr1 152365078 152365131 -44830301 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1747 388 282 8 60 chr1 152365143 152365260 -44830172 - MLT1D LTR MaLR -369 136 26 5 1747 318 50 0 0 chr1 152365291 152365331 -44830101 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1747 746 233 132 36 chr1 152365535 152365889 -44829543 - L1MA4 LINE L1 -363 5937 5573 5 1747 345 236 44 11 chr1 152366264 152366354 -44829078 - B4A SINE B4 -2 290 198 5 1747 336 104 45 0 chr1 152366354 152366421 -44829011 + (TCTCCC)n Simple_repeat Simple_repeat 4 73 0 5 1747 372 238 25 0 chr1 152366424 152366504 -44828928 - B4A SINE B4 -86 206 125 5 1747 1773 146 66 3 chr1 152366504 152366875 -44828557 + RMER16 LTR ERVK 1 533 0 5 1747 269 293 244 0 chr1 152366875 152366955 -44828477 - B4A SINE B4 -162 130 31 5 1747 357 268 30 40 chr1 152367010 152367111 -44828321 + RSINE1 SINE B4 4 103 -62 5 1747 465 103 0 0 chr1 152367227 152367295 -44828137 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 5 1747 653 34 11 0 chr1 152367468 152367556 -44827876 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1747 771 112 0 0 chr1 152367823 152367939 -44827493 + (GGAA)n Simple_repeat Simple_repeat 4 119 0 5 1747 36 0 0 0 chr1 152368117 152368153 -44827279 + AT_rich Low_complexity Low_complexity 1 36 0 5 1747 1084 109 0 0 chr1 152368153 152368300 -44827132 - B1_Mus2 SINE Alu 0 147 1 5 1747 16640 69 15 25 chr1 152368302 152370857 -44824575 - L1VL4 LINE L1 0 3559 1031 5 1747 26424 21 1 0 chr1 152370856 152374790 -44820642 - L1Md_T LINE L1 0 6582 2647 5 1747 6321 105 18 0 chr1 152374789 152375806 -44819626 - L1VL4 LINE L1 -2513 1046 13 5 1747 248 286 56 28 chr1 152375843 152375915 -44819517 + B4 SINE B4 85 158 -134 5 1747 2421 189 56 71 chr1 152376843 152376975 -44818457 - RMER1C Other Other -1 1341 1196 5 1747 591 15 0 0 chr1 152376975 152377043 -44818389 + (GAA)n Simple_repeat Simple_repeat 2 69 0 5 1747 2421 189 56 71 chr1 152377043 152377514 -44817918 - RMER1C Other Other -147 1195 747 5 1747 3601 140 13 13 chr1 152377643 152378794 -44816638 + L1VL4 LINE L1 512 1650 -2167 5 1747 4201 83 2 13 chr1 152378792 152379427 -44816005 + L1VL4 LINE L1 2905 3532 -285 5 1747 1484 38 5 0 chr1 152379484 152379668 -44815764 + MTB LTR MaLR 216 400 0 5 1747 248 184 0 0 chr1 152380077 152380115 -44815317 + tRNA-Ile-ATA tRNA tRNA 1 38 -39 5 1747 191 352 73 8 chr1 152380211 152380334 -44815098 + MIRb SINE MIR 81 211 -57 5 1747 240 264 8 23 chr1 152380373 152380392 -44815040 + polypurine Low_complexity Low_complexity 4 22 0 5 1747 7544 74 21 8 chr1 152380392 152381402 -44814030 + RLTR13D5 LTR ERVK 1 1023 0 5 1747 240 264 8 23 chr1 152381402 152381514 -44813918 + GA-rich Low_complexity Low_complexity 23 133 0 5 1747 654 314 200 10 chr1 152382256 152382742 -44812690 + MER92B LTR ERV1 1 578 -58 5 1747 457 326 63 68 chr1 152385699 152385917 -44809515 + MLT2F LTR ERVL 11 272 -231 5 1747 751 252 36 82 chr1 152386541 152386761 -44808671 - B3 SINE B2 -2 214 5 5 1747 183 302 196 10 chr1 152386848 152386945 -44808487 + MIRc SINE MIR 13 127 -141 5 1747 479 228 0 29 chr1 152386968 152387072 -44808360 - B1_Mm SINE Alu 0 147 47 5 1747 224 30 30 0 chr1 152387077 152387110 -44808322 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1747 702 282 54 72 chr1 152389152 152389516 -44805916 - MLT1B LTR MaLR 0 467 38 5 1747 24 53 0 0 chr1 152389581 152389619 -44805813 + AT_rich Low_complexity Low_complexity 1 38 0 5 1747 590 223 21 35 chr1 152389626 152389770 -44805662 + Lx8 LINE L1 6789 6930 -543 5 1747 7406 58 1 1 chr1 152389768 152390720 -44804712 + L1_Mus1 LINE L1 5650 6567 0 5 1747 362 23 0 0 chr1 152390778 152390853 -44804579 + L1_Mus1 LINE L1 6515 6567 0 5 1747 1323 273 74 48 chr1 152390857 152391400 -44804032 + Lx8 LINE L1 6916 7472 -1 5 1747 279 341 57 0 chr1 152391443 152391531 -44803901 - RSINE1 SINE B4 -29 136 44 5 1747 190 298 0 17 chr1 152391760 152391818 -44803614 + MIR SINE MIR 86 142 -66 5 1747 1460 215 91 100 chr1 152392052 152392502 -44802930 + RLTR41 LTR ERV1 1 446 0 5 1747 208 352 27 33 chr1 152393913 152394066 -44801366 + MIRm SINE MIR 21 169 -93 5 1747 504 214 19 5 chr1 152394563 152394769 -44800663 + CT-rich Low_complexity Low_complexity 1 208 0 6 1747 361 237 57 76 chr1 152395124 152395229 -44800203 - ID_B1 SINE B4 -7 217 115 6 1747 439 239 52 15 chr1 152395244 152395380 -44800052 + MLT1B LTR MaLR 33 173 -217 6 1747 417 138 0 0 chr1 152395646 152395726 -44799706 + (GA)n Simple_repeat Simple_repeat 2 81 0 6 1747 409 243 58 0 chr1 152395886 152395989 -44799443 + MLT1B LTR MaLR 282 390 0 6 1747 213 349 0 15 chr1 152396178 152396245 -44799187 + RSINE1 SINE B4 21 86 -79 6 1747 916 202 63 6 chr1 152396186 152396360 -44799072 + B3 SINE B2 27 210 -6 6 1747 1014 203 31 31 chr1 152397439 152397668 -44797764 - ORR1C2 LTR MaLR 0 384 156 6 1747 237 297 184 56 chr1 152398328 152398453 -44796979 + MamGypLTR2b LTR Gypsy 306 446 -476 6 1747 812 276 40 31 chr1 152399272 152399500 -44795932 + MLT1B LTR MaLR 149 378 -12 6 1747 1457 136 22 14 chr1 152399560 152399783 -44795649 + URR1B DNA MER1_type 1 225 0 6 1747 2080 253 90 92 chr1 152403873 152404714 -44790718 - RMER13A LTR ERVK -7 853 14 6 1747 3921 93 27 35 chr1 152404936 152405528 -44789904 - MT2B LTR ERVL -14 587 1 6 1747 255 332 1 23 chr1 152405622 152405729 -44789703 + MTEb LTR MaLR 268 372 -7 6 1747 257 109 76 30 chr1 152405732 152405798 -44789634 + A-rich Low_complexity Low_complexity 5 73 0 6 1747 4395 142 57 11 chr1 152405813 152406535 -44788897 + RMER6A LTR ERVK 2 756 0 6 1747 4953 216 32 13 chr1 152406535 152407546 -44787886 - Lx7 LINE L1 -768 6928 5899 6 1747 5362 156 74 17 chr1 152407545 152408744 -44786688 - L1_Mur3 LINE L1 -3451 2429 1158 6 1747 359 288 32 48 chr1 152408995 152409119 -44786313 + ORR1E LTR MaLR 1 122 -248 6 1747 576 280 101 39 chr1 152409402 152409610 -44785822 + ORR1E LTR MaLR 139 359 0 6 1747 32 0 0 0 chr1 152409680 152409712 -44785720 + AT_rich Low_complexity Low_complexity 1 32 0 6 1747 186 103 0 0 chr1 152410301 152410330 -44785102 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1747 1024 87 64 14 chr1 152412609 152412749 -44782683 + B1_Mm SINE Alu 1 147 0 6 1747 201 108 0 0 chr1 152412750 152412787 -44782645 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1747 209 140 0 17 chr1 152412798 152412856 -44782576 + A-rich Low_complexity Low_complexity 2 58 0 6 1747 204 40 0 0 chr1 152413744 152413769 -44781663 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 1747 246 242 54 47 chr1 152413931 152414057 -44781375 + Charlie2a DNA MER1_type 61 185 -2676 6 1747 239 259 143 51 chr1 152414164 152414339 -44781093 + Charlie2a DNA MER1_type 1463 1653 -1208 6 1747 1075 113 0 7 chr1 152414929 152415072 -44780360 + B1_Mus1 SINE Alu 1 142 -6 6 1747 192 152 0 0 chr1 152415081 152415114 -44780318 + (CAA)n Simple_repeat Simple_repeat 1 33 0 6 1747 472 178 9 9 chr1 152415199 152415307 -44780125 + CT-rich Low_complexity Low_complexity 2 109 0 6 1747 1032 180 30 10 chr1 152415353 152415555 -44779877 - Lx3C LINE L1 -2 6974 6769 6 1747 582 211 53 0 chr1 152416552 152416666 -44778766 + PB1D9 SINE Alu 1 120 0 6 1747 3153 159 28 11 chr1 152416788 152417328 -44778104 + Lx2B LINE L1 6449 6997 -3 6 1747 1260 41 0 33 chr1 152417368 152417519 -44777913 - B1_Mus2 SINE Alu 0 147 2 6 1747 672 13 0 0 chr1 152418384 152418461 -44776971 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 1747 216 216 0 0 chr1 152418496 152418533 -44776899 - PB1D9 SINE Alu -32 88 52 6 1747 1040 73 40 13 chr1 152418522 152418674 -44776758 + B2_Mm2 SINE B2 39 194 -1 6 1747 1608 53 11 5 chr1 152419731 152419922 -44775510 + B2_Mm2 SINE B2 1 192 -3 6 1747 207 0 0 0 chr1 152419942 152419965 -44775467 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1747 972 160 162 20 chr1 152420280 152420478 -44774954 - URR1A DNA MER1_type 0 226 1 6 1747 945 230 85 20 chr1 152421168 152421368 -44774064 - B3 SINE B2 -1 215 3 6 1747 214 171 0 0 chr1 152421394 152421429 -44774003 + CT-rich Low_complexity Low_complexity 2 36 0 6 1747 284 419 7 0 chr1 152421558 152421713 -44773719 + MIRc SINE MIR 82 237 -31 6 1747 887 183 24 25 chr1 152425332 152425519 -44769913 - B3 SINE B2 -9 186 1 6 1747 22 0 0 0 chr1 152425541 152425563 -44769869 + AT_rich Low_complexity Low_complexity 1 22 0 6 1747 721 259 18 133 chr1 152425604 152425822 -44769610 - B3A SINE B2 -2 193 1 6 1747 533 300 78 110 chr1 152426532 152426787 -44768645 - B4A SINE B4 -44 248 2 6 1747 213 277 0 0 chr1 152427619 152427666 -44767766 + MIR SINE MIR 30 76 -132 6 1747 417 248 186 21 chr1 152428597 152428737 -44766695 - RSINE1 SINE B4 0 165 3 6 1747 791 99 11 3 chr1 152429552 152429678 -44765754 - B1_Mm SINE Alu 0 149 24 6 1747 361 135 40 0 chr1 152429838 152429912 -44765520 + (CATA)n Simple_repeat Simple_repeat 3 79 0 6 1747 902 299 0 43 chr1 152429914 152430190 -44765242 + B4A SINE B4 13 276 -16 6 1747 424 0 36 0 chr1 152430193 152430249 -44765183 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1747 23 86 0 0 chr1 152431560 152431618 -44763814 + AT_rich Low_complexity Low_complexity 1 58 0 6 1747 409 278 138 60 chr1 152431681 152431949 -44763483 + L1MC1 LINE L1 5998 6286 -47 6 1747 609 286 57 11 chr1 152432023 152432200 -44763232 - B3A SINE B2 -11 187 3 6 1747 2816 159 44 26 chr1 152432450 152432946 -44762486 + Lx5 LINE L1 6546 7050 0 6 1747 736 305 15 72 chr1 152433108 152433373 -44762059 + B4A SINE B4 43 292 0 6 1747 402 57 0 0 chr1 152433426 152433479 -44761953 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1747 405 304 94 0 chr1 152435120 152435258 -44760174 + RSINE1 SINE B4 5 155 -10 6 1747 205 297 68 0 chr1 152436053 152436127 -44759305 - MIRb SINE MIR -64 204 126 6 1747 339 270 26 10 chr1 152436473 152436586 -44758846 + B1F SINE Alu 1 112 -5 6 1748 186 189 0 0 chr1 152437123 152437160 -44758272 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 6 1748 620 328 56 0 chr1 152437182 152437377 -44758055 - B4A SINE B4 -86 206 1 6 1748 460 242 212 0 chr1 152437412 152437544 -44757888 - RSINE1 SINE B4 -2 163 4 6 1748 359 310 112 0 chr1 152437888 152438004 -44757428 + RSINE1 SINE B4 29 157 -8 6 1748 264 200 0 0 chr1 152438015 152438070 -44757362 + (CACG)n Simple_repeat Simple_repeat 4 58 0 6 1748 287 105 18 0 chr1 152439097 152439154 -44756278 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 6 1748 860 242 6 0 chr1 152442748 152442909 -44752523 + RSINE1 SINE B4 4 165 0 6 1748 219 323 85 16 chr1 152443465 152443594 -44751838 - MIRb SINE MIR -32 236 99 6 1748 275 0 29 0 chr1 152443607 152443642 -44751790 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1748 554 75 12 0 chr1 152444184 152444264 -44751168 + (TATG)n Simple_repeat Simple_repeat 2 82 0 6 1748 494 269 90 0 chr1 152446229 152446363 -44749069 + B3A SINE B2 3 148 -50 6 1748 648 86 0 0 chr1 152446364 152446469 -44748963 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1748 1014 157 0 0 chr1 152448270 152448448 -44746984 + GA-rich Low_complexity Low_complexity 3 180 0 6 1748 381 316 122 58 chr1 152448782 152449125 -44746307 + L1MC4 LINE L1 6960 7324 -718 6 1748 198 0 0 0 chr1 152449968 152449990 -44745442 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 6 1748 384 22 0 0 chr1 152451662 152451707 -44743725 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1748 239 197 28 0 chr1 152451727 152451798 -44743634 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 6 1748 1142 82 0 0 chr1 152455595 152455742 -44739690 + B1_Mus2 SINE Alu 1 147 0 6 1748 489 331 60 16 chr1 152456102 152456418 -44739014 + L1MA6 LINE L1 5764 6093 -207 6 1748 315 194 19 10 chr1 152457173 152457277 -44738155 + (TG)n Simple_repeat Simple_repeat 1 105 0 6 1748 865 269 61 18 chr1 152457302 152457582 -44737850 - B4A SINE B4 0 292 1 6 1748 414 153 152 8 chr1 152458878 152459003 -44736429 + Lx9 LINE L1 7493 7635 -9 6 1748 315 0 0 0 chr1 152459006 152459041 -44736391 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1748 699 12 0 0 chr1 152459041 152459121 -44736311 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1748 404 264 27 9 chr1 152459529 152459640 -44735792 - ID_B1 SINE B4 -28 196 84 6 1748 471 310 147 35 chr1 152460376 152460690 -44734742 + L2b LINE L2 2017 2365 -1054 6 1748 213 271 84 14 chr1 152460943 152461014 -44734418 + L2b LINE L2 2991 3066 -309 6 1748 225 37 0 0 chr1 152461466 152461493 -44733939 - Lx3B LINE L1 -141 6832 6806 6 1748 552 116 26 43 chr1 152461493 152461610 -44733822 + Lx3B LINE L1 6856 6970 -3 6 1748 224 93 0 44 chr1 152462542 152462587 -44732845 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1748 255 244 42 42 chr1 152462652 152462772 -44732660 - Lx8 LINE L1 0 7473 7354 6 1748 976 142 6 18 chr1 152462781 152462946 -44732486 - Lx7 LINE L1 0 7696 7534 6 1748 495 79 0 50 chr1 152462956 152463036 -44732396 + B1_Mur4 SINE Alu 75 150 0 6 1748 1092 257 46 10 chr1 152463061 152463367 -44732065 - Lx6 LINE L1 -161 7299 6983 6 1748 377 109 16 0 chr1 152463372 152463436 -44731996 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 6 1748 24 32 0 0 chr1 152463439 152463470 -44731962 + AT_rich Low_complexity Low_complexity 1 31 0 6 1748 974 149 7 0 chr1 152463470 152463618 -44731814 - B1_Mur4 SINE Alu -1 149 1 6 1748 393 279 85 52 chr1 152463632 152463733 -44731699 - Lx8 LINE L1 -143 7330 7228 6 1748 195 42 0 0 chr1 152463733 152463757 -44731675 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1748 393 279 85 52 chr1 152463757 152463867 -44731565 - Lx8 LINE L1 -246 7227 7113 6 1748 356 246 111 32 chr1 152464132 152464258 -44731174 - ID_B1 SINE B4 -2 222 87 6 1748 1354 82 16 16 chr1 152465064 152465251 -44730181 - B2_Mm2 SINE B2 -8 187 1 6 1748 778 237 73 5 chr1 152465301 152465492 -44729940 - B3 SINE B2 -11 205 2 6 1748 288 273 293 11 chr1 152467037 152467300 -44728132 + L2 LINE L2 2005 2341 -1078 6 1748 473 237 50 104 chr1 152467428 152467630 -44727802 - RMER12 LTR ERVK 0 1322 1080 7 1748 1007 65 168 0 chr1 152467625 152467780 -44727652 + B2_Mm2 SINE B2 15 195 0 7 1748 351 263 45 119 chr1 152467767 152467901 -44727531 - RMER12 LTR ERVK -205 1117 994 7 1748 225 65 0 0 chr1 152467915 152467946 -44727486 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1748 494 185 22 0 chr1 152467946 152468038 -44727394 - RMER12 LTR ERVK -431 891 798 7 1748 23 0 0 0 chr1 152468736 152468759 -44726673 + AT_rich Low_complexity Low_complexity 1 23 0 7 1748 634 240 15 30 chr1 152468782 152468915 -44726517 - RSINE1 SINE B4 -12 153 23 7 1748 847 243 6 6 chr1 152468966 152469148 -44726284 + B3A SINE B2 1 182 -16 7 1748 348 43 0 0 chr1 152469171 152469217 -44726215 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1748 582 249 57 36 chr1 152469288 152469480 -44725952 - Tigger7 DNA MER2_type -9 2482 2287 7 1748 3774 129 80 19 chr1 152470505 152471155 -44724277 + RLTR17 LTR ERVK 1 690 -2 7 1748 268 300 10 62 chr1 152471485 152471581 -44723851 - ID_B1 SINE B4 -121 103 13 7 1748 492 191 37 28 chr1 152471763 152471871 -44723561 - B1F SINE Alu -1 148 40 7 1748 571 291 128 42 chr1 152471966 152472536 -44722896 - L1MB7 LINE L1 -9 6175 5557 7 1748 3580 21 136 0 chr1 152472551 152472985 -44722447 + MT2_Mm LTR ERVL 1 493 0 7 1748 1163 224 67 10 chr1 152473166 152473464 -44721968 + Lx6 LINE L1 7146 7460 0 7 1748 599 48 0 12 chr1 152473762 152473846 -44721586 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 7 1748 283 204 64 11 chr1 152476168 152476262 -44719170 + L1MA5 LINE L1 5865 5963 -337 7 1748 829 152 30 0 chr1 152476429 152476561 -44718871 - B1_Mur4 SINE Alu -11 139 4 7 1748 634 32 112 31 chr1 152476587 152476685 -44718747 - B1_Mm SINE Alu 0 147 42 7 1748 332 218 157 60 chr1 152476619 152476804 -44718628 - RLTR25B LTR ERVK -519 509 307 7 1748 3961 40 0 6 chr1 152476833 152477312 -44718120 + L1Md_F2 LINE L1 6096 6571 -11 7 1748 21 36 0 0 chr1 152477754 152477782 -44717650 + AT_rich Low_complexity Low_complexity 1 28 0 7 1748 186 191 0 0 chr1 152479250 152479292 -44716140 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1748 699 228 66 77 chr1 152479759 152479940 -44715492 - B3A SINE B2 -15 183 5 7 1748 261 0 0 0 chr1 152481423 152481452 -44713980 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1748 386 334 15 0 chr1 152481794 152481902 -44713530 - AluG_3 SINE Alu -89 222 137 7 1748 1439 65 5 0 chr1 152482644 152482830 -44712602 + B2_Mm1a SINE B2 1 187 -6 7 1748 1978 196 57 25 chr1 152483426 152483885 -44711547 + Lx5 LINE L1 6588 7047 -3 7 1748 643 333 50 32 chr1 152483984 152484263 -44711169 + B4A SINE B4 2 285 -7 7 1748 306 0 0 0 chr1 152484292 152484326 -44711106 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1748 213 171 24 0 chr1 152485356 152485397 -44710035 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1748 1018 287 127 13 chr1 152488293 152488749 -44706683 - Lx8 LINE L1 -4 7469 6962 7 1748 21 71 0 0 chr1 152489578 152489620 -44705812 + AT_rich Low_complexity Low_complexity 1 42 0 7 1748 945 298 106 32 chr1 152489621 152490180 -44705252 - Lx8 LINE L1 -55 7418 6819 7 1748 4932 118 44 58 chr1 152491476 152492384 -44703048 + RMER17A2 LTR ERVK 1 895 -11 7 1748 209 342 25 25 chr1 152492421 152492502 -44702930 - L2b LINE L2 -4 3371 3291 7 1748 555 251 29 29 chr1 152493070 152493242 -44702190 + B4 SINE B4 1 172 -120 7 1748 383 0 21 0 chr1 152493268 152493315 -44702117 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 7 1748 1467 305 95 8 chr1 152494740 152495463 -44699969 + Lx8 LINE L1 6129 6914 -559 7 1748 1285 258 34 0 chr1 152495535 152495803 -44699629 + MTD LTR MaLR 1 277 -142 7 1748 372 22 0 0 chr1 152499025 152499070 -44696362 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1748 1134 251 141 5 chr1 152499174 152499542 -44695890 + MTD LTR MaLR 2 419 0 7 1748 1037 6 0 100 chr1 152500094 152500294 -44695138 + (TCTTG)n Simple_repeat Simple_repeat 1 180 0 1 1748 666 166 28 28 chr1 152500305 152500485 -44694947 + CT-rich Low_complexity Low_complexity 1 180 0 2 1748 914 160 6 0 chr1 152500502 152500671 -44694761 + CT-rich Low_complexity Low_complexity 2 171 0 2 1748 1099 79 0 7 chr1 152500677 152500818 -44694614 - B1_Mm SINE Alu -6 141 2 3 1748 742 210 35 0 chr1 152501239 152501382 -44694050 + B3 SINE B2 47 194 -22 4 1748 335 351 60 40 chr1 152501452 152501651 -44693781 + MER63A DNA AcHobo 2 204 -6 5 1748 669 269 0 24 chr1 152501968 152502132 -44693300 - RSINE1 SINE B4 -2 163 4 6 1748 21 57 0 0 chr1 152503181 152503216 -44692216 + AT_rich Low_complexity Low_complexity 1 35 0 7 1748 271 221 152 65 chr1 152503223 152503315 -44692117 + PB1D10 SINE Alu 10 109 -8 8 1748 227 234 39 13 chr1 152503337 152503415 -44692017 + ID4 SINE ID 4 83 0 9 1748 222 37 0 0 chr1 152504682 152504709 -44690723 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1748 328 327 0 80 chr1 152504739 152504852 -44690580 - RSINE1 SINE B4 0 165 62 1 1748 516 280 0 46 chr1 152505148 152505279 -44690153 - RSINE1 SINE B4 -37 128 4 1 1748 26 64 0 0 chr1 152506152 152506199 -44689233 + AT_rich Low_complexity Low_complexity 1 47 0 1 1748 1545 34 34 5 chr1 152506430 152506636 -44688796 + L1Md_F3 LINE L1 6373 6584 0 1 1748 669 243 7 7 chr1 152506682 152506823 -44688609 + B1_Mur1 SINE Alu 2 142 -7 1 1748 243 340 182 5 chr1 152507312 152507504 -44687928 - MIR SINE MIR -35 227 2 1 1748 307 305 56 35 chr1 152507551 152507732 -44687700 + MLT1B LTR MaLR 7 202 -188 1 1748 826 105 129 0 chr1 152507822 152507946 -44687486 - B1_Mus1 SINE Alu -7 141 2 1 1748 981 272 38 22 chr1 152507952 152508320 -44687112 + Lx9 LINE L1 7065 7438 -206 1 1748 480 301 6 46 chr1 152508574 152508748 -44686684 + MLT1B LTR MaLR 183 349 -41 1 1748 189 390 37 37 chr1 152509035 152509224 -44686208 + MIRb SINE MIR 54 242 -26 2 1748 629 286 114 0 chr1 152509347 152509522 -44685910 - B4A SINE B4 -97 195 1 2 1748 262 319 97 0 chr1 152509647 152509719 -44685713 + ID4 SINE ID 3 81 -2 2 1748 217 354 141 0 chr1 152509719 152509746 -44685686 + ID_B1 SINE B4 3 115 -109 2 1748 585 269 39 17 chr1 152509959 152510137 -44685295 - B3A SINE B2 -16 182 1 2 1748 1078 137 38 5 chr1 152510568 152510752 -44684680 - URR1A DNA MER1_type 0 226 37 2 1748 247 277 90 21 chr1 152512277 152512421 -44683011 + MER5A DNA MER1_type 30 183 -6 2 1748 1517 71 18 9 chr1 152512422 152512648 -44682784 - L1_Mus1 LINE L1 -98 6469 6242 2 1748 220 0 86 0 chr1 152512726 152512761 -44682671 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1748 764 58 48 0 chr1 152512762 152512865 -44682567 - B1_Mus2 SINE Alu 0 147 40 2 1748 266 198 154 51 chr1 152512805 152512922 -44682510 - RLTR25B LTR ERVK -519 509 381 3 1748 1069 96 0 0 chr1 152513003 152513139 -44682293 - B1_Mus1 SINE Alu -11 137 2 3 1748 1609 246 31 26 chr1 152513775 152514192 -44681240 + MTD LTR MaLR 1 419 0 3 1748 387 417 45 30 chr1 152514373 152514704 -44680728 + MLT1K LTR MaLR 202 537 -58 3 1748 240 298 0 0 chr1 152514704 152514761 -44680671 + CT-rich Low_complexity Low_complexity 2 58 0 3 1748 325 340 107 25 chr1 152515535 152515861 -44679571 - L1MC4 LINE L1 0 8042 7690 3 1748 21 0 0 0 chr1 152516130 152516151 -44679281 + AT_rich Low_complexity Low_complexity 1 21 0 3 1748 194 262 45 56 chr1 152516219 152516308 -44679124 - L2 LINE L2 -1089 2330 2243 3 1748 1010 147 59 0 chr1 152517843 152518013 -44677419 + B2_Mm2 SINE B2 2 181 -14 3 1748 5335 69 20 0 chr1 152518077 152518783 -44676649 + L1_Mus4 LINE L1 5914 6633 -3 3 1748 26 30 0 0 chr1 152518811 152518844 -44676588 + AT_rich Low_complexity Low_complexity 1 33 0 4 1748 26 0 0 0 chr1 152519812 152519838 -44675594 + AT_rich Low_complexity Low_complexity 1 26 0 4 1748 30 45 0 0 chr1 152520903 152520947 -44674485 + AT_rich Low_complexity Low_complexity 1 44 0 4 1748 22 35 0 0 chr1 152521260 152521289 -44674143 + AT_rich Low_complexity Low_complexity 1 29 0 4 1748 201 302 0 0 chr1 152522144 152522197 -44673235 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1748 275 409 85 18 chr1 152522204 152522428 -44673004 - B4 SINE B4 -2 290 52 4 1748 258 32 0 0 chr1 152522956 152522987 -44672445 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1748 188 114 45 0 chr1 152524277 152524321 -44671111 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 4 1748 24 32 0 0 chr1 152525049 152525080 -44670352 + AT_rich Low_complexity Low_complexity 1 31 0 4 1748 194 128 26 0 chr1 152525264 152525303 -44670129 + GA-rich Low_complexity Low_complexity 1 40 0 4 1748 21 36 0 0 chr1 152525604 152525632 -44669800 + AT_rich Low_complexity Low_complexity 1 28 0 5 1748 394 148 25 0 chr1 152525647 152525728 -44669704 - Lx LINE L1 -12 7632 7550 5 1748 2369 88 8 47 chr1 152525734 152526116 -44669316 - Lx LINE L1 0 6654 6288 5 1748 843 39 0 0 chr1 152526843 152526946 -44668486 + (TTTCC)n Simple_repeat Simple_repeat 3 105 0 5 1748 1019 258 69 92 chr1 152527040 152527455 -44667977 + MTE2a LTR MaLR 1 405 -14 5 1748 196 381 78 14 chr1 152527976 152528117 -44667315 - L2 LINE L2 -418 3001 2852 5 1748 1151 112 0 6 chr1 152530114 152530294 -44665138 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 1748 1105 79 0 0 chr1 152530296 152530436 -44664996 - B1_Mm SINE Alu -6 141 2 5 1748 1609 158 79 16 chr1 152531161 152531464 -44663968 + Lx5 LINE L1 6133 6454 -596 5 1748 1472 122 64 15 chr1 152531470 152531810 -44663622 + Lx5 LINE L1 6686 7054 -4 5 1748 26 64 0 0 chr1 152531823 152531870 -44663562 + AT_rich Low_complexity Low_complexity 1 47 0 5 1748 390 285 82 30 chr1 152531962 152532096 -44663336 - B1F SINE Alu -8 141 1 5 1748 264 329 66 72 chr1 152532096 152532125 -44663307 - B4 SINE B4 -70 218 57 6 1748 281 303 118 83 chr1 152532330 152532366 -44663066 + B4 SINE B4 50 90 -202 6 1748 420 230 81 73 chr1 152532366 152532502 -44662930 + B1_Mm SINE Alu 1 137 -10 6 1748 827 276 46 28 chr1 152532647 152532930 -44662502 + Lx8 LINE L1 7071 7358 -115 6 1748 227 287 10 31 chr1 152532930 152532964 -44662468 + polypurine Low_complexity Low_complexity 2 36 0 6 1748 2863 152 81 2 chr1 152532964 152533484 -44661948 + Lx4A LINE L1 6497 7057 -1 6 1748 227 287 10 31 chr1 152533484 152533546 -44661886 + polypurine Low_complexity Low_complexity 37 96 0 6 1748 563 284 47 7 chr1 152534140 152534289 -44661143 - ID_B1 SINE B4 -69 155 1 6 1748 3578 143 61 21 chr1 152534598 152534768 -44660664 + RLTR17 LTR ERVK 6 198 -494 6 1748 553 27 0 26 chr1 152534768 152534845 -44660587 + (GGA)n Simple_repeat Simple_repeat 3 77 0 6 1748 3578 143 61 21 chr1 152534845 152535333 -44660099 + RLTR17 LTR ERVK 199 689 -3 6 1748 555 221 16 0 chr1 152535333 152535436 -44659996 - RCHARR1 DNA MER1_type -25 949 845 7 1748 25 31 0 0 chr1 152536084 152536116 -44659316 + AT_rich Low_complexity Low_complexity 1 32 0 7 1748 579 236 239 11 chr1 152536121 152536301 -44659131 + ID_B1 SINE B4 4 224 0 7 1748 495 0 0 0 chr1 152537250 152537305 -44658127 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 7 1748 765 202 0 0 chr1 152537344 152537473 -44657959 - B3 SINE B2 -87 129 1 7 1748 315 0 0 0 chr1 152537477 152537512 -44657920 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1748 907 17 17 0 chr1 152537537 152537654 -44657778 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 7 1748 375 78 0 0 chr1 152538468 152538519 -44656913 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 7 1748 3367 21 106 11 chr1 152539514 152539948 -44655484 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1748 818 286 51 21 chr1 152542277 152542513 -44652919 + MTE-int LTR MaLR 1272 1514 -66 7 1748 1106 36 7 0 chr1 152542767 152542906 -44652526 + (TTC)n Simple_repeat Simple_repeat 2 141 0 8 1748 181 301 84 21 chr1 152544202 152544297 -44651135 + L2c LINE L2 3283 3383 -4 8 1748 200 357 40 20 chr1 152545458 152545558 -44649874 + L3b LINE CR1 274 375 -107 8 1748 188 333 0 29 chr1 152546580 152546648 -44648784 + L2b LINE L2 3124 3189 -186 8 1748 642 266 6 34 chr1 152548045 152548224 -44647208 - Tigger1 DNA MER2_type -10 2408 2235 8 1748 356 228 56 146 chr1 152548287 152548431 -44647001 - Tigger1 DNA MER2_type -2283 135 5 8 1748 1211 54 0 0 chr1 152549212 152549360 -44646072 - B1_Mus1 SINE Alu 0 148 1 8 1748 273 274 61 31 chr1 152549404 152549502 -44645930 - MIRc SINE MIR -45 223 123 8 1748 282 333 84 88 chr1 152549578 152549805 -44645627 - B4 SINE B4 0 292 67 8 1748 262 125 0 51 chr1 152549867 152549926 -44645506 + G-rich Low_complexity Low_complexity 1 56 0 8 1748 1774 223 56 0 chr1 152551629 152552073 -44643359 + Lx9 LINE L1 7154 7622 -22 8 1748 610 230 57 7 chr1 152552400 152552540 -44642892 - B1_Mus1 SINE Alu 0 150 4 9 1748 338 279 0 96 chr1 152552441 152552556 -44642876 - MT2B LTR ERVL -345 256 153 9 1748 32 0 0 0 chr1 152552556 152552588 -44642844 + AT_rich Low_complexity Low_complexity 1 32 0 9 1748 276 53 0 0 chr1 152552623 152552661 -44642771 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1748 508 272 39 66 chr1 152553963 152554219 -44641213 + L1M4 LINE L1 370 618 -6286 9 1748 682 272 71 5 chr1 152554228 152554424 -44641008 + B3 SINE B2 4 212 -4 9 1748 3073 194 26 8 chr1 152554431 152555043 -44640389 + Lx2B LINE L1 6365 6987 -13 9 1748 1028 209 0 23 chr1 152555174 152555390 -44640042 + B3 SINE B2 1 211 -5 9 1748 539 365 141 52 chr1 152555568 152556008 -44639424 - MLT1D LTR MaLR -3 502 24 9 1748 371 342 101 7 chr1 152556093 152556379 -44639053 + L1M4 LINE L1 1332 1644 -5690 9 1748 291 308 100 38 chr1 152556641 152556931 -44638501 + L1M4 LINE L1 2000 2307 -4701 9 1748 737 51 0 10 chr1 152557683 152557782 -44637650 + (CA)n Simple_repeat Simple_repeat 2 99 0 9 1748 258 269 73 31 chr1 152557832 152557928 -44637504 + MLT1J-int LTR MaLR 634 733 -654 1 1748 273 209 0 0 chr1 152557932 152557975 -44637457 + 5S rRNA rRNA 1 43 -78 1 1748 24 0 0 0 chr1 152558638 152558662 -44636770 + AT_rich Low_complexity Low_complexity 1 24 0 1 1748 262 268 30 82 chr1 152558816 152558950 -44636482 - MIRb SINE MIR -9 259 133 1 1748 773 297 67 11 chr1 152561774 152562043 -44633389 + B4A SINE B4 9 292 0 1 1748 401 158 12 0 chr1 152562063 152562145 -44633287 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1748 180 0 0 0 chr1 152562392 152562412 -44633020 + (GCTG)n Simple_repeat Simple_repeat 2 21 0 1 1748 284 228 0 17 chr1 152562412 152562470 -44632962 + B4 SINE B4 172 228 -64 1 1748 191 269 125 25 chr1 152563421 152563501 -44631931 + L2 LINE L2 1917 2004 -1415 1 1748 255 359 53 29 chr1 152564059 152564303 -44631129 + L2 LINE L2 2689 2938 -481 1 1748 210 171 0 0 chr1 152565503 152565544 -44629888 + CT-rich Low_complexity Low_complexity 6 46 0 1 1748 278 348 16 33 chr1 152565709 152565831 -44629601 - ID_B1 SINE B4 -13 211 92 1 1748 380 258 104 6 chr1 152566455 152566619 -44628813 + Lx8 LINE L1 7289 7468 -5 1 1748 66 61 0 0 chr1 152566656 152566771 -44628661 + AT_rich Low_complexity Low_complexity 1 115 0 1 1749 333 25 0 0 chr1 152570237 152570277 -44625155 + B1_Mus2 SINE Alu 77 116 -31 1 1749 180 0 0 0 chr1 152571003 152571023 -44624409 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1749 2396 208 6 33 chr1 152571023 152571570 -44623862 + Lx2B LINE L1 6468 6999 -1 1 1749 30 0 0 0 chr1 152571570 152571600 -44623832 + AT_rich Low_complexity Low_complexity 1 30 0 1 1749 1760 318 91 71 chr1 152571681 152572804 -44622628 + Cheshire DNA MER1_type 877 2021 -399 1 1749 19196 90 29 12 chr1 152572808 152576543 -44618889 + L1Md_F LINE L1 217 4003 -1880 1 1749 1580 282 33 20 chr1 152576575 152577122 -44618310 - Lx8 LINE L1 -794 6679 6126 1 1749 201 178 0 0 chr1 152578018 152578063 -44617369 + GA-rich Low_complexity Low_complexity 4 48 0 1 1749 243 88 0 0 chr1 152578075 152578109 -44617323 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1749 234 374 154 15 chr1 152578147 152578348 -44617084 - MIRb SINE MIR -14 254 26 1 1749 635 250 71 12 chr1 152578364 152578619 -44616813 - Charlie5 DNA MER1_type -4 2620 2351 1 1749 1574 193 135 0 chr1 152579128 152579455 -44615977 + ORR1D1 LTR MaLR 3 373 -1 1 1749 1228 204 36 40 chr1 152582666 152582942 -44612490 + RLTR40 LTR ERVK 542 816 -1 1 1749 330 242 58 43 chr1 152583226 152583341 -44612091 + PB1D10 SINE Alu 6 119 -1 1 1749 1289 84 39 0 chr1 152587202 152587380 -44608052 - B2_Mm2 SINE B2 -10 185 1 1 1749 391 241 34 11 chr1 152587429 152587510 -44607922 + RSINE1 SINE B4 32 115 -50 1 1749 369 75 0 0 chr1 152587510 152587563 -44607869 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1749 186 43 0 0 chr1 152588306 152588329 -44607103 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1749 2616 186 60 2 chr1 152588430 152588942 -44606490 + Lx5 LINE L1 6508 7049 -1 1 1749 220 304 164 6 chr1 152590137 152590296 -44605136 + L2a LINE L2 3213 3396 -30 1 1749 215 250 50 0 chr1 152591093 152591153 -44604279 + MIRc SINE MIR 73 135 -133 1 1749 439 147 29 10 chr1 152592681 152592784 -44602648 + Lx4A LINE L1 6953 7057 -1 1 1749 891 238 34 0 chr1 152594513 152594719 -44600713 - B3 SINE B2 0 216 4 1 1749 256 315 35 91 chr1 152596548 152596745 -44598687 - MIR SINE MIR -63 199 10 1 1749 22 0 0 0 chr1 152600937 152600959 -44594473 + AT_rich Low_complexity Low_complexity 1 22 0 1 1749 493 277 41 46 chr1 152602050 152602247 -44593185 + B3A SINE B2 2 197 -1 1 1749 360 0 0 0 chr1 152603331 152603371 -44592061 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1749 513 0 0 0 chr1 152603371 152603427 -44592005 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1749 1066 254 85 10 chr1 152603997 152604395 -44591037 + Lx9 LINE L1 7208 7635 -9 1 1749 247 361 0 10 chr1 152605201 152605299 -44590133 + PB1D10 SINE Alu 21 117 0 1 1749 234 105 0 0 chr1 152605349 152605387 -44590045 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1749 410 169 135 0 chr1 152607526 152607615 -44587817 + B1_Mur1 SINE Alu 36 136 -13 1 1749 321 26 0 0 chr1 152607628 152607666 -44587766 + (GGA)n Simple_repeat Simple_repeat 2 39 0 1 1749 21 36 0 0 chr1 152607860 152607888 -44587544 + AT_rich Low_complexity Low_complexity 1 28 0 1 1749 220 262 59 59 chr1 152608432 152608517 -44586915 + MIRc SINE MIR 74 158 -110 1 1749 972 322 43 13 chr1 152610302 152610604 -44584828 + MTEa LTR MaLR 63 373 -6 1 1749 787 147 60 60 chr1 152612106 152612273 -44583159 + URR1B DNA MER1_type 59 225 0 1 1749 279 0 0 0 chr1 152613793 152613824 -44581608 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1749 435 264 0 62 chr1 152614737 152614750 -44580682 + B1_Mus1 SINE Alu 37 45 -103 1 1749 186 43 0 0 chr1 152614750 152614773 -44580659 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 1 1749 513 242 0 0 chr1 152614773 152614872 -44580560 + B1_Mur3 SINE Alu 45 143 -6 1 1749 225 94 0 0 chr1 152614873 152614905 -44580527 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1 1749 1251 252 84 12 chr1 152614919 152615337 -44580095 - Charlie1b DNA MER1_type -71 452 5 1 1749 247 277 0 0 chr1 152615518 152615578 -44579854 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1749 298 74 18 18 chr1 152615578 152615633 -44579799 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1749 592 258 60 6 chr1 152619777 152619945 -44575487 - MTE2a LTR MaLR -16 363 187 1 1749 350 320 89 28 chr1 152620005 152620185 -44575247 - MIR SINE MIR -37 225 35 1 1749 225 0 0 0 chr1 152622663 152622688 -44572744 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1 1749 1335 72 0 0 chr1 152622691 152622871 -44572561 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1749 253 326 97 0 chr1 152624440 152624561 -44570871 - MIRc SINE MIR -96 172 39 1 1749 190 323 90 10 chr1 152624585 152624685 -44570747 + MIR SINE MIR 146 253 -9 1 1749 231 36 0 0 chr1 152625511 152625539 -44569893 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1749 383 307 0 58 chr1 152626602 152626723 -44568709 + PB1D10 SINE Alu 3 116 -1 1 1749 490 226 21 28 chr1 152627040 152627181 -44568251 - Lx9 LINE L1 -157 7487 7348 1 1749 22 35 0 0 chr1 152627324 152627353 -44568079 + AT_rich Low_complexity Low_complexity 1 29 0 1 1749 3151 128 28 8 chr1 152627405 152627907 -44567525 + Lx4A LINE L1 6529 7040 -18 1 1749 243 0 0 0 chr1 152627907 152627934 -44567498 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1 1749 352 222 14 0 chr1 152628997 152629069 -44566363 + PB1D9 SINE Alu 41 113 -7 1 1749 340 341 50 33 chr1 152629961 152630143 -44565289 + MER21B LTR ERV1 486 670 -193 1 1749 211 301 147 59 chr1 152630390 152630676 -44564756 - L3b LINE CR1 -135 347 37 1 1749 849 197 40 54 chr1 152631287 152631545 -44563887 + ORR1D1 LTR MaLR 1 260 -118 1 1749 232 250 100 0 chr1 152631555 152631615 -44563817 + ORR1D1 LTR MaLR 166 231 -143 1 1749 542 316 5 36 chr1 152631615 152631835 -44563597 + Lx7 LINE L1 7096 7308 -388 1 1749 362 114 14 0 chr1 152631837 152631907 -44563525 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1749 523 192 196 13 chr1 152632056 152632209 -44563223 + ORR1D1 LTR MaLR 194 374 0 1 1749 968 182 21 5 chr1 152633014 152633202 -44562230 + MTC LTR MaLR 231 421 0 1 1749 231 278 178 0 chr1 152634049 152634218 -44561214 - L1M6 LINE L1 -4966 1530 1332 1 1749 763 227 0 0 chr1 152634376 152634517 -44560915 - B1_Mur2 SINE Alu -7 142 2 1 1749 1705 281 68 28 chr1 152634565 152635438 -44559994 - L1MA4 LINE L1 -39 6261 5354 1 1749 8222 60 8 2 chr1 152635455 152637238 -44558194 - L1Md_F2 LINE L1 -8 6574 4780 1 1749 1565 264 98 36 chr1 152637503 152638257 -44557175 - L1MA4 LINE L1 -990 5153 4353 1 1749 817 293 24 5 chr1 152639198 152639407 -44556025 + B4 SINE B4 1 213 -79 1 1749 343 0 43 0 chr1 152639411 152639458 -44555974 + (CAAT)n Simple_repeat Simple_repeat 4 52 0 1 1749 760 295 90 24 chr1 152640460 152640915 -44554517 + L1MA4 LINE L1 4500 4984 -1159 1 1749 694 151 15 143 chr1 152640915 152641092 -44554340 + B2_Mm1t SINE B2 42 192 -1 1 1749 909 305 60 26 chr1 152641153 152641917 -44553515 + L1MA4 LINE L1 5055 5887 -413 1 1749 277 0 93 0 chr1 152641960 152642003 -44553429 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 1 1749 440 253 26 46 chr1 152642232 152642294 -44553138 + Lx6 LINE L1 7095 7154 -306 1 1749 486 0 0 0 chr1 152642294 152642348 -44553084 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1749 440 253 26 46 chr1 152642348 152642438 -44552994 + Lx6 LINE L1 7155 7244 -216 1 1749 13730 74 24 3 chr1 152642456 152645106 -44550326 - L1VL2 LINE L1 -627 2988 284 1 1749 460 296 69 0 chr1 152645107 152645266 -44550166 + Lx6 LINE L1 7265 7434 -26 1 1749 41 58 0 0 chr1 152645338 152645407 -44550025 + AT_rich Low_complexity Low_complexity 1 69 0 1 1749 250 214 0 0 chr1 152645504 152645546 -44549886 + 5S rRNA rRNA 1 42 -79 1 1749 730 168 205 0 chr1 152646597 152646782 -44548650 + URR1B DNA MER1_type 2 224 -1 1 1749 228 111 0 0 chr1 152646806 152646842 -44548590 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1749 729 292 5 14 chr1 152646844 152647056 -44548376 + B3 SINE B2 1 210 -6 1 1749 229 267 0 91 chr1 152648597 152648663 -44546769 + ID4_ SINE ID 4 63 -20 1 1749 2104 107 84 50 chr1 152648663 152648932 -44546500 + Lx LINE L1 6253 6518 -136 1 1749 207 69 0 0 chr1 152648932 152648961 -44546471 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 1 1749 2104 107 84 50 chr1 152648961 152649073 -44546359 + Lx LINE L1 6519 6646 -8 1 1749 186 339 15 0 chr1 152649485 152649550 -44545882 - MIR SINE MIR 0 262 197 1 1749 603 236 0 0 chr1 152651524 152651634 -44543798 - PB1D10 SINE Alu -7 110 1 1 1749 241 316 76 67 chr1 152651870 152652094 -44543338 + MIRc SINE MIR 43 268 0 1 1749 186 230 0 63 chr1 152652619 152652698 -44542734 + L2b LINE L2 2932 3005 -370 2 1749 698 211 7 22 chr1 152652861 152652997 -44542435 - B1_Mus2 SINE Alu -13 134 1 2 1749 285 358 66 7 chr1 152653142 152653294 -44542138 + Arthur1A DNA Tip100 4 164 -13 2 1749 271 364 42 18 chr1 152653843 152654011 -44541421 - MER104 DNA Tc2 -7 174 3 2 1749 520 175 32 0 chr1 152654674 152654800 -44540632 + Lx9 LINE L1 7507 7636 -8 2 1749 1588 262 80 34 chr1 152654839 152655462 -44539970 + Lx9 LINE L1 6989 7640 -4 2 1749 21 0 0 0 chr1 152658889 152658910 -44536522 + AT_rich Low_complexity Low_complexity 1 21 0 2 1749 218 171 0 0 chr1 152659140 152659175 -44536257 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1749 1098 30 0 15 chr1 152659491 152659628 -44535804 - B1_Mm SINE Alu -2 145 11 2 1749 450 223 51 120 chr1 152659495 152659653 -44535779 - B4A SINE B4 -71 221 75 2 1749 231 152 0 0 chr1 152660120 152660166 -44535266 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1749 244 267 0 107 chr1 152661352 152661436 -44533996 + MT2B LTR ERVL 188 262 -339 2 1749 437 172 103 75 chr1 152661361 152661468 -44533964 + B1_Mur4 SINE Alu 41 150 0 2 1749 536 0 0 15 chr1 152662861 152662926 -44532506 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 1749 378 91 0 0 chr1 152665530 152665585 -44529847 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1749 314 286 72 97 chr1 152665644 152665923 -44529509 - B4 SINE B4 -19 273 2 2 1749 1103 50 7 0 chr1 152666987 152667128 -44528304 + B1_Mus1 SINE Alu 7 148 0 2 1749 243 0 0 0 chr1 152667369 152667396 -44528036 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1749 243 350 51 10 chr1 152668292 152668390 -44527042 - B1F1 SINE Alu -39 110 9 2 1749 1575 108 238 25 chr1 152668514 152668837 -44526595 + ORR1B1 LTR MaLR 1 392 -2 2 1749 399 295 35 6 chr1 152669118 152669292 -44526140 + L1MA4 LINE L1 5758 5936 -364 2 1749 189 0 0 0 chr1 152669312 152669333 -44526099 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1749 204 299 0 29 chr1 152669511 152669580 -44525852 + GA-rich Low_complexity Low_complexity 1 67 0 2 1749 324 0 0 0 chr1 152669584 152669620 -44525812 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1749 200 135 27 0 chr1 152669695 152669732 -44525700 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 2 1749 617 310 39 97 chr1 152670463 152671021 -44524411 + L1MA4A LINE L1 5503 6026 -274 2 1749 360 307 76 14 chr1 152672347 152672634 -44522798 - MTD LTR MaLR 0 419 39 2 1749 186 215 208 79 chr1 152672692 152672793 -44522639 - MIR SINE MIR -24 238 125 2 1749 182 83 56 0 chr1 152673782 152673818 -44521614 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 2 1749 404 284 89 93 chr1 152673954 152674276 -44521156 + MTE2a LTR MaLR 9 379 0 2 1749 26 30 0 0 chr1 152674962 152674995 -44520437 + AT_rich Low_complexity Low_complexity 1 33 0 2 1749 339 137 0 0 chr1 152675091 152675164 -44520268 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 2 1749 476 319 81 8 chr1 152676276 152676510 -44518922 - MamRep605 Unknown Unknown -525 351 101 2 1749 36 40 0 0 chr1 152676543 152676593 -44518839 + AT_rich Low_complexity Low_complexity 1 50 0 2 1749 195 333 16 62 chr1 152677171 152677235 -44518197 - L3 LINE CR1 -95 4394 4334 2 1749 1368 49 49 5 chr1 152677542 152677727 -44517705 - B2_Mm2 SINE B2 -1 194 2 2 1749 1572 239 52 11 chr1 152677902 152678266 -44517166 + MTEa LTR MaLR 1 379 0 2 1749 2156 256 28 15 chr1 152679297 152679882 -44515550 + Lx5 LINE L1 6458 7032 -18 2 1749 481 308 150 48 chr1 152681371 152681450 -44513982 + L1ME3A LINE L1 5423 5506 -667 2 1749 1052 162 141 0 chr1 152681450 152681648 -44513784 - URR1A DNA MER1_type 0 226 1 2 1749 481 308 150 48 chr1 152681648 152682250 -44513182 + L1ME3A LINE L1 5507 6173 0 2 1749 959 200 62 10 chr1 152682278 152682470 -44512962 + B3 SINE B2 1 202 -14 2 1749 21 0 0 0 chr1 152683406 152683427 -44512005 + AT_rich Low_complexity Low_complexity 1 21 0 2 1749 7134 115 14 20 chr1 152684118 152685632 -44509800 - Lx LINE L1 -6 6648 5142 2 1749 6052 101 30 9 chr1 152685633 152687314 -44508118 - L1VL2 LINE L1 -1797 1818 101 2 1749 192 77 0 0 chr1 152687699 152687725 -44507707 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 2 1749 1583 237 29 97 chr1 152687975 152688502 -44506930 - RLTR16 LTR ERVK -14 491 1 2 1749 432 37 0 0 chr1 152688596 152688650 -44506782 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1749 428 274 214 53 chr1 152689268 152689572 -44505860 - MTD LTR MaLR -23 396 1 2 1749 1201 308 73 26 chr1 152689649 152690385 -44505047 + L1ME1 LINE L1 5391 6161 -18 2 1749 29 28 0 0 chr1 152690386 152690422 -44505010 + AT_rich Low_complexity Low_complexity 1 36 0 2 1749 204 149 0 0 chr1 152690422 152690469 -44504963 + (TTA)n Simple_repeat Simple_repeat 1 47 0 2 1749 1472 56 0 0 chr1 152690597 152690776 -44504656 - L1_Mus1 LINE L1 -130 6437 6259 2 1749 24 53 0 0 chr1 152690777 152690815 -44504617 + AT_rich Low_complexity Low_complexity 1 38 0 2 1749 385 232 0 25 chr1 152690821 152690980 -44504452 + (CATATA)n Simple_repeat Simple_repeat 4 158 0 2 1749 295 156 52 0 chr1 152691008 152691085 -44504347 + (CATA)n Simple_repeat Simple_repeat 2 82 0 2 1749 436 354 0 0 chr1 152691106 152691284 -44504148 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1749 405 0 0 0 chr1 152691294 152691339 -44504093 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1749 198 0 0 0 chr1 152691339 152691360 -44504072 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1749 480 307 71 87 chr1 152691644 152691954 -44503478 - ORR1E LTR MaLR -42 317 13 2 1749 459 0 0 0 chr1 152692930 152692981 -44502451 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1749 593 245 65 0 chr1 152693692 152693831 -44501601 + B1F2 SINE Alu 1 148 -1 2 1749 849 155 165 0 chr1 152693968 152694162 -44501270 - URR1A DNA MER1_type 0 226 1 2 1749 210 174 0 0 chr1 152695092 152695138 -44500294 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1749 702 129 97 0 chr1 152695198 152695322 -44500110 - B1_Mur4 SINE Alu -9 141 6 2 1749 721 276 23 19 chr1 152696831 152697045 -44498387 - B3 SINE B2 -1 215 1 2 1749 1525 58 0 24 chr1 152697179 152697390 -44498042 + L1Md_F2 LINE L1 6377 6582 0 2 1749 180 111 0 0 chr1 152697686 152697713 -44497719 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1749 276 127 0 0 chr1 152698096 152698151 -44497281 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 1749 576 65 0 0 chr1 152698152 152698229 -44497203 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 218 4436 18 0 0 chr1 152698672 152699181 -44496251 + L1Md_T LINE L1 5078 5586 -297 2 1750 8983 5 0 0 chr1 152699181 152700202 -44495230 + L1Md_T LINE L1 5587 6582 0 2 1750 1145 68 0 0 chr1 152700202 152700350 -44495082 + B1_Mus1 SINE Alu 1 148 0 2 1750 248 24 0 109 chr1 152700350 152700370 -44495062 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1750 238 377 71 5 chr1 152702429 152702653 -44492779 + LTR33 LTR ERVL 274 512 -3 2 1750 1674 158 113 6 chr1 152703706 152704025 -44491407 - ORR1C1 LTR MaLR 0 378 26 2 1750 256 385 8 17 chr1 152704060 152704179 -44491253 - MIRb SINE MIR -17 251 134 2 1750 342 349 123 25 chr1 152706606 152706841 -44488591 + MLT1H LTR MaLR 18 275 -274 2 1750 6762 46 1 4 chr1 152708414 152709248 -44486184 + L1Md_F2 LINE L1 5737 6568 -14 2 1750 183 42 0 0 chr1 152709248 152709272 -44486160 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1750 24 0 0 0 chr1 152709737 152709761 -44485671 + AT_rich Low_complexity Low_complexity 1 24 0 2 1750 304 399 13 7 chr1 152710467 152710616 -44484816 + Tigger5 DNA MER2_type 1 150 -2256 2 1750 1353 223 178 25 chr1 152710826 152711185 -44484247 - Lx6 LINE L1 -8 7452 7039 2 1750 375 228 0 81 chr1 152711388 152711512 -44483920 + Charlie5 DNA MER1_type 27 140 -2484 2 1750 261 0 0 0 chr1 152711827 152711856 -44483576 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1750 35 0 0 0 chr1 152712437 152712472 -44482960 + AT_rich Low_complexity Low_complexity 1 35 0 2 1750 553 132 19 0 chr1 152712685 152712791 -44482641 + Lx4A LINE L1 6949 7056 -2 2 1750 1194 213 60 21 chr1 152712824 152713107 -44482325 + MTD LTR MaLR 71 364 -55 2 1750 234 291 25 0 chr1 152713292 152713371 -44482061 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 2 1750 241 281 16 0 chr1 152713419 152713483 -44481949 + CT-rich Low_complexity Low_complexity 3 67 0 2 1750 274 324 77 19 chr1 152714249 152714353 -44481079 - PB1D10 SINE Alu -7 110 1 2 1750 327 25 0 0 chr1 152714730 152714770 -44480662 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1750 522 0 0 0 chr1 152714770 152714828 -44480604 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1750 504 72 0 0 chr1 152715872 152715941 -44479491 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1750 1716 55 5 0 chr1 152716030 152716247 -44479185 - L1Md_T LINE L1 -1 6581 6364 2 1750 268 291 85 16 chr1 152716349 152716478 -44478954 + L3 LINE CR1 3755 3892 -597 2 1750 368 224 20 30 chr1 152717438 152717539 -44477893 + HAL1-2a_MD LINE L1 2415 2514 -510 2 1750 520 192 14 14 chr1 152717934 152718082 -44477350 - Lx9 LINE L1 -5 7639 7492 2 1750 25 95 0 0 chr1 152718301 152718375 -44477057 + AT_rich Low_complexity Low_complexity 1 74 0 2 1750 365 194 21 59 chr1 152718422 152718608 -44476824 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 2 1750 21 0 0 0 chr1 152719921 152719942 -44475490 + AT_rich Low_complexity Low_complexity 1 21 0 2 1750 182 37 0 36 chr1 152720049 152720077 -44475355 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2 1750 203 260 20 0 chr1 152724494 152724544 -44470888 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1750 225 0 0 0 chr1 152726328 152726353 -44469079 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1750 1342 167 11 59 chr1 152726362 152726649 -44468783 - Lx3C LINE L1 -16 6960 6688 3 1750 23577 148 15 5 chr1 152726828 152729196 -44466236 + Lx3_Mus LINE L1 540 2939 -2947 3 1750 2733 93 2 49 chr1 152729196 152729625 -44465807 - L1Md_F2 LINE L1 -1 6581 6173 3 1750 23577 164 18 7 chr1 152729625 152732571 -44462861 + Lx3_Mus LINE L1 2940 5905 -1104 3 1750 2772 184 44 13 chr1 152732571 152733112 -44462320 + Lx LINE L1 6096 6653 -1 3 1750 1776 163 30 3 chr1 152733112 152733134 -44462298 + Lx3_Mus LINE L1 5906 5926 -1083 3 1750 346 333 10 20 chr1 152733618 152733719 -44461713 + PB1D10 SINE Alu 5 104 -13 3 1750 234 0 0 0 chr1 152733738 152733764 -44461668 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 1750 2009 29 4 8 chr1 152734120 152734364 -44461068 - L1Md_F2 LINE L1 -12 6570 6328 3 1750 7829 37 2 0 chr1 152735805 152737052 -44458380 - L1Md_F2 LINE L1 -1 6581 5331 3 1750 379 330 80 35 chr1 152737334 152737535 -44457897 - AmnSINE1 SINE SINE -146 429 220 3 1750 22 88 0 0 chr1 152737726 152737783 -44457649 + AT_rich Low_complexity Low_complexity 1 57 0 3 1750 536 192 17 11 chr1 152737799 152737978 -44457454 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1750 1127 287 208 27 chr1 152738117 152738996 -44456436 + Lx8 LINE L1 6183 7220 -253 3 1750 305 206 0 117 chr1 152739256 152739326 -44456106 + PB1D10 SINE Alu 45 106 -11 3 1750 314 43 43 0 chr1 152739326 152739373 -44456059 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 1750 207 239 0 0 chr1 152739379 152739446 -44455986 + GA-rich Low_complexity Low_complexity 3 69 0 3 1750 301 256 94 63 chr1 152739467 152739863 -44455569 - L1M3 LINE L1 -549 5634 5254 3 1750 1111 295 66 23 chr1 152740010 152740569 -44454863 + Lx8 LINE L1 6883 7465 -8 3 1750 761 312 71 12 chr1 152741101 152741354 -44454078 + MER45C DNA Tip100 4 271 -682 3 1750 343 403 90 56 chr1 152741434 152741810 -44453622 + MER45C DNA Tip100 386 774 -179 3 1750 581 161 76 8 chr1 152741880 152741999 -44453433 - MER45B DNA Tip100 -198 842 716 3 1750 301 341 96 7 chr1 152742468 152742604 -44452828 + RSINE1 SINE B4 3 150 -15 3 1750 270 0 0 0 chr1 152742609 152742639 -44452793 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1750 209 108 27 0 chr1 152742639 152742676 -44452756 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1750 562 287 70 22 chr1 152743652 152743923 -44451509 + B4A SINE B4 1 284 -8 3 1750 356 158 0 13 chr1 152743965 152744042 -44451390 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1750 788 295 48 43 chr1 152746433 152746747 -44448685 + MLT1F2 LTR MaLR 4 320 -240 3 1750 25 0 0 0 chr1 152746811 152746836 -44448596 + AT_rich Low_complexity Low_complexity 1 25 0 3 1750 2350 309 85 24 chr1 152747607 152748810 -44446622 + Lx8 LINE L1 6064 7339 -134 3 1750 6897 123 62 9 chr1 152748812 152750095 -44445337 - L1_Mur2 LINE L1 -1831 4046 2696 3 1750 426 190 68 68 chr1 152750069 152750216 -44445216 + Lx4B LINE L1 6908 7054 -4 3 1750 534 353 138 23 chr1 152750675 152751319 -44444113 - L1M5 LINE L1 -1079 5067 4350 3 1750 226 234 213 0 chr1 152751453 152751547 -44443885 - Lx8 LINE L1 -2 7471 7358 3 1750 232 300 11 0 chr1 152751601 152751691 -44443741 - L1M5 LINE L1 -1983 4163 4073 3 1750 343 246 92 75 chr1 152752141 152752317 -44443115 + MTD LTR MaLR 8 215 -204 3 1750 490 263 61 51 chr1 152752318 152752514 -44442918 + Lx7 LINE L1 7210 7407 -289 3 1750 575 210 120 70 chr1 152752727 152752927 -44442505 + MTD LTR MaLR 196 405 -14 3 1750 603 78 0 0 chr1 152753086 152753176 -44442256 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1750 284 297 62 51 chr1 152753195 152753390 -44442042 - L1MA4 LINE L1 -373 5927 5731 3 1750 765 249 5 62 chr1 152753814 152754024 -44441408 - B3A SINE B2 0 198 1 3 1750 357 75 0 0 chr1 152755504 152755557 -44439875 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1750 651 266 49 60 chr1 152757372 152757556 -44437876 + B3A SINE B2 1 182 -16 3 1750 2492 155 52 7 chr1 152757561 152757672 -44437760 - RMER4A LTR ERVK 0 466 347 3 1750 561 30 0 0 chr1 152757672 152757739 -44437693 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1750 2492 155 52 7 chr1 152757739 152758068 -44437364 - RMER4A LTR ERVK -120 346 7 3 1750 21 57 0 0 chr1 152758083 152758118 -44437314 + AT_rich Low_complexity Low_complexity 1 35 0 3 1750 710 42 0 11 chr1 152758316 152758411 -44437021 + (TAG)n Simple_repeat Simple_repeat 2 95 0 3 1750 558 294 38 52 chr1 152759344 152759576 -44435856 - L1MC1 LINE L1 -79 6254 6018 3 1750 6070 38 0 0 chr1 152759576 152760293 -44435139 + L1Md_T LINE L1 5866 6582 0 3 1750 558 294 38 52 chr1 152760293 152760347 -44435085 - L1MC1 LINE L1 -316 6017 5972 3 1750 508 279 31 25 chr1 152761240 152761402 -44434030 - RSINE1 SINE B4 0 165 3 3 1750 186 43 0 0 chr1 152762901 152762924 -44432508 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 1750 462 236 0 0 chr1 152764546 152764669 -44430763 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1750 190 134 29 43 chr1 152764821 152764891 -44430541 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1750 216 0 0 0 chr1 152765111 152765135 -44430297 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 3 1750 24 0 0 0 chr1 152766126 152766150 -44429282 + AT_rich Low_complexity Low_complexity 1 24 0 3 1750 955 8 38 0 chr1 152766551 152766683 -44428749 + (GGTTG)n Simple_repeat Simple_repeat 2 138 0 3 1750 29 28 0 0 chr1 152767069 152767105 -44428327 + AT_rich Low_complexity Low_complexity 1 36 0 3 1750 21 89 0 0 chr1 152767933 152767989 -44427443 + AT_rich Low_complexity Low_complexity 1 56 0 3 1750 1142 280 111 41 chr1 152769169 152769290 -44426142 - Lx8 LINE L1 -1 7472 7334 3 1750 567 0 0 0 chr1 152769290 152769353 -44426079 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 1750 1142 280 111 41 chr1 152769353 152769842 -44425590 - Lx8 LINE L1 -140 7333 6821 3 1750 350 313 12 0 chr1 152771157 152771240 -44424192 + PB1D7 SINE Alu 2 85 -35 3 1750 735 137 0 0 chr1 152772094 152772218 -44423214 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1750 25 31 0 0 chr1 152773107 152773139 -44422293 + AT_rich Low_complexity Low_complexity 1 32 0 3 1750 360 0 0 0 chr1 152773579 152773619 -44421813 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1750 329 300 114 0 chr1 152774553 152774693 -44420739 + MIR SINE MIR 66 221 -41 3 1750 7358 95 14 2 chr1 152776323 152777604 -44417828 + Lx LINE L1 5346 6648 -6 3 1750 3396 66 65 5 chr1 152777667 152778096 -44417336 - L1Md_F2 LINE L1 -1 6581 6127 3 1750 666 0 0 0 chr1 152779056 152779130 -44416302 + (TCC)n Simple_repeat Simple_repeat 2 75 0 3 1750 213 119 0 0 chr1 152779334 152779376 -44416056 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1750 211 337 84 79 chr1 152780753 152780956 -44414476 + L2b LINE L2 3163 3366 -9 3 1750 209 180 0 20 chr1 152781267 152781318 -44414114 + GA-rich Low_complexity Low_complexity 3 52 0 3 1750 1086 272 97 37 chr1 152781981 152782413 -44413019 + L1MA6 LINE L1 4827 5284 -859 3 1750 1075 270 123 54 chr1 152782608 152783122 -44412310 + L1MA6 LINE L1 5367 5949 -351 3 1750 740 224 21 7 chr1 152783122 152783266 -44412166 + B1_Mur2 SINE Alu 3 148 -1 3 1750 1075 308 66 59 chr1 152783266 152783547 -44411885 + L1MA6 LINE L1 5950 6218 -82 3 1750 1708 32 0 0 chr1 152783547 152783734 -44411698 + B2_Mm1t SINE B2 1 187 -6 3 1750 1075 308 66 59 chr1 152783734 152783813 -44411619 + L1MA6 LINE L1 6219 6297 -3 3 1750 192 216 0 0 chr1 152783880 152783917 -44411515 - L2b LINE L2 -20 3355 3319 3 1750 594 39 0 0 chr1 152784707 152784784 -44410648 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1750 2042 120 42 0 chr1 152785424 152785732 -44409700 - ORR1A4 LTR MaLR -8 321 1 3 1750 336 319 210 57 chr1 152785937 152786270 -44409162 + MLT1D LTR MaLR 114 497 -8 3 1750 207 0 0 0 chr1 152786624 152786647 -44408785 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1750 264 390 51 7 chr1 152787024 152787161 -44408271 + L2c LINE L2 3237 3379 -8 3 1750 707 245 21 0 chr1 152787859 152788002 -44407430 + B1F2 SINE Alu 1 146 -3 3 1750 759 176 20 72 chr1 152788010 152788163 -44407269 + B1F2 SINE Alu 3 147 -2 3 1750 290 208 0 25 chr1 152788195 152788274 -44407158 + GA-rich Low_complexity Low_complexity 2 78 0 3 1750 248 371 49 25 chr1 152789282 152789445 -44405987 + MER20B DNA MER1_type 22 188 -595 3 1750 348 127 0 0 chr1 152791166 152791221 -44404211 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1750 24 32 0 0 chr1 152791724 152791755 -44403677 + AT_rich Low_complexity Low_complexity 1 31 0 3 1750 336 48 0 0 chr1 152791784 152791826 -44403606 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1750 339 259 131 51 chr1 152794149 152794347 -44401085 + L1ME2 LINE L1 5593 5804 -360 3 1750 244 270 75 53 chr1 152794465 152794559 -44400873 + L1ME2 LINE L1 6006 6101 -78 3 1750 2532 149 11 67 chr1 152795702 152796148 -44399284 - MTC LTR MaLR 0 421 1 3 1750 282 303 101 58 chr1 152798029 152798185 -44397247 - ORR1E LTR MaLR -208 162 1 3 1750 1428 259 80 34 chr1 152798207 152798707 -44396725 + Lx8 LINE L1 6928 7450 -23 3 1750 196 311 124 48 chr1 152799028 152799278 -44396154 + L2 LINE L2 1215 1483 -1936 3 1750 231 214 0 51 chr1 152799672 152799731 -44395701 + L1MC4 LINE L1 7069 7124 -918 3 1750 240 371 11 0 chr1 152799760 152799849 -44395583 - MER20 DNA MER1_type -47 172 83 3 1750 752 281 68 39 chr1 152800047 152800403 -44395029 + RLTR16 LTR ERVK 33 463 -42 3 1750 370 331 39 8 chr1 152801118 152801246 -44394186 - MER20 DNA MER1_type -1 218 87 3 1750 639 261 163 69 chr1 152801279 152801389 -44394043 + MLT1A1 LTR MaLR 31 148 -260 3 1750 1257 122 95 72 chr1 152801389 152801610 -44393822 + URR1A DNA MER1_type 1 226 0 3 1750 639 260 175 77 chr1 152801610 152801839 -44393593 + MLT1A1 LTR MaLR 149 402 -6 3 1750 405 58 0 0 chr1 152802238 152802290 -44393142 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1750 448 168 28 18 chr1 152803826 152803935 -44391497 + CT-rich Low_complexity Low_complexity 3 112 0 3 1750 226 232 48 21 chr1 152804319 152804508 -44390924 - RMER17D2 LTR ERVK -363 446 253 3 1750 611 269 60 109 chr1 152805181 152805444 -44389988 - B4A SINE B4 -21 271 21 3 1750 3631 31 0 0 chr1 152805444 152805836 -44389596 + MTA_Mm LTR MaLR 2 393 -3 3 1750 378 0 0 0 chr1 152805836 152805878 -44389554 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1750 611 269 60 109 chr1 152805878 152805897 -44389535 - B4A SINE B4 -272 20 3 3 1750 303 263 28 75 chr1 152807481 152807588 -44387844 - PB1D10 SINE Alu -10 107 6 4 1750 1827 272 47 18 chr1 152807663 152808172 -44387260 + Lx8 LINE L1 6210 6733 -740 4 1750 486 33 0 0 chr1 152808185 152808245 -44387187 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1750 224 354 49 0 chr1 152808271 152808353 -44387079 + B4A SINE B4 82 167 -125 4 1750 433 319 4 13 chr1 152808285 152808406 -44387026 + PB1D10 SINE Alu 12 128 -19 4 1750 362 273 182 0 chr1 152808838 152808959 -44386473 - ID_B1 SINE B4 -1 223 81 4 1750 325 324 51 29 chr1 152809080 152809105 -44386327 + CYRA11_Mm Unknown Y-chromosome 143 171 -446 4 1750 906 164 0 0 chr1 152809105 152809264 -44386168 - URR1A DNA MER1_type 0 226 68 4 1750 250 300 28 14 chr1 152809245 152809316 -44386116 - MTE2b LTR MaLR -307 72 1 4 1750 236 258 19 3 chr1 152809321 152809402 -44386030 + MIR SINE MIR 183 268 0 4 1750 463 381 63 45 chr1 152809498 152809833 -44385599 - MLT1M LTR MaLR -313 359 19 4 1750 352 68 0 0 chr1 152809833 152809877 -44385555 - ORR1A3 LTR MaLR 0 326 283 4 1750 2333 106 12 33 chr1 152809882 152810215 -44385217 - ORR1A2 LTR MaLR -1 326 1 4 1750 10854 135 92 11 chr1 152810215 152812029 -44383403 - ORR1A2-int LTR MaLR -1 1962 1 4 1750 2460 85 22 3 chr1 152812029 152812348 -44383084 - ORR1A2 LTR MaLR 0 327 3 4 1750 2086 99 12 63 chr1 152813341 152813676 -44381756 - ORR1A3 LTR MaLR -8 318 1 4 1750 7864 83 6 10 chr1 152813987 152815175 -44380257 - L1_Mus3 LINE L1 -8 6630 5445 4 1750 760 242 68 15 chr1 152815932 152816137 -44379295 + B3 SINE B2 1 216 0 4 1750 2541 106 63 5 chr1 152817198 152817595 -44377837 + BGLII_A LTR ERVK 26 445 0 4 1750 190 43 0 0 chr1 152817828 152817851 -44377581 - L2b LINE L2 -245 3130 3108 4 1750 525 25 38 0 chr1 152818232 152818311 -44377121 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1750 234 296 193 0 chr1 152819652 152819787 -44375645 - MIR SINE MIR -26 236 76 4 1750 194 0 39 0 chr1 152819847 152819873 -44375559 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1750 1166 41 6 82 chr1 152819878 152820037 -44375395 - B1_Mus2 SINE Alu 0 147 1 4 1750 917 254 131 65 chr1 152820087 152820424 -44375008 - MTE2a LTR MaLR -20 359 1 4 1750 7125 59 39 1 chr1 152820506 152821403 -44374029 - L1Md_F2 LINE L1 -10 6572 5642 4 1750 1161 274 97 31 chr1 152821471 152822047 -44373385 - L1MA7 LINE L1 -244 6047 5434 4 1750 779 118 15 0 chr1 152822064 152822200 -44373232 + Lx3_Mus LINE L1 6871 7008 -1 4 1750 376 311 120 46 chr1 152822233 152822624 -44372808 + L1M5 LINE L1 2908 3327 -2819 4 1750 537 16 0 0 chr1 152822793 152822855 -44372577 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1750 327 320 146 32 chr1 152822856 152823234 -44372198 - L1M5 LINE L1 -2256 3890 3470 4 1750 358 278 38 38 chr1 152823307 152823464 -44371968 + L1MEd LINE L1 21 177 -5942 4 1750 284 0 28 0 chr1 152824022 152824058 -44371374 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1750 424 236 64 28 chr1 152824131 152824240 -44371192 + B2_Mm2 SINE B2 3 115 -80 4 1750 428 285 32 37 chr1 152825068 152825268 -44370164 + L1M5 LINE L1 5454 5649 -684 4 1750 269 243 104 28 chr1 152825307 152825451 -44369981 + L1M5 LINE L1 5732 5886 -278 4 1750 1354 232 91 12 chr1 152825779 152826110 -44369322 - MTD LTR MaLR -45 374 18 4 1750 642 193 0 0 chr1 152826173 152826287 -44369145 + B3A SINE B2 9 122 -76 4 1750 1015 274 71 51 chr1 152826296 152826646 -44368786 + ORR1E LTR MaLR 3 359 0 4 1750 314 335 94 20 chr1 152827123 152827324 -44368108 - L2 LINE L2 -779 2640 2425 4 1750 412 280 75 8 chr1 152827636 152827769 -44367663 + MER63A DNA AcHobo 34 175 -35 4 1750 185 320 117 0 chr1 152827928 152828031 -44367401 - MIR SINE MIR -41 221 107 4 1750 708 242 55 27 chr1 152828287 152828470 -44366962 + B3 SINE B2 4 191 -25 4 1750 2685 44 3 9 chr1 152829284 152829605 -44365827 - L1_Mus2 LINE L1 0 6566 6248 4 218 1749 238 29 90 chr1 152829827 152830316 -44365116 + MLT1C LTR MaLR 1 459 -8 4 1751 194 286 94 12 chr1 152831219 152831304 -44364128 + L2b LINE L2 2231 2322 -1097 4 1751 268 299 83 33 chr1 152831374 152831495 -44363937 - MamRep605 Unknown Unknown -45 831 705 4 1751 905 301 106 37 chr1 152831520 152832031 -44363401 - MamRep605 Unknown Unknown -233 643 98 4 1751 184 323 0 3 chr1 152832353 152832406 -44363026 + L2b LINE L2 3107 3161 -226 4 1751 576 297 28 0 chr1 152832961 152833106 -44362326 - RSINE1 SINE B4 -15 150 2 4 1751 640 290 12 0 chr1 152833390 152833559 -44361873 - B3A SINE B2 -27 171 1 4 1751 22 0 0 0 chr1 152833984 152834006 -44361426 + AT_rich Low_complexity Low_complexity 1 22 0 4 1751 533 320 64 29 chr1 152834519 152834928 -44360504 + L2a LINE L2 2232 2654 -765 4 1751 1062 209 15 0 chr1 152835092 152835298 -44360134 + B3 SINE B2 1 209 -7 4 1751 224 200 18 0 chr1 152835349 152835404 -44360028 + GA-rich Low_complexity Low_complexity 3 58 0 4 1751 953 121 6 17 chr1 152835406 152835583 -44359849 + (GGA)n Simple_repeat Simple_repeat 3 177 0 4 1751 283 338 105 48 chr1 152835655 152835937 -44359495 + L2a LINE L2 2954 3264 -162 4 1751 459 0 0 0 chr1 152835937 152835988 -44359444 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1751 283 338 105 48 chr1 152835988 152836124 -44359308 + L2a LINE L2 3265 3396 -30 4 1751 1349 300 77 30 chr1 152836428 152837067 -44358365 + L1MB8 LINE L1 5505 6173 -5 4 1751 627 243 14 7 chr1 152837081 152837222 -44358210 + B1F2 SINE Alu 1 142 -7 4 1751 217 355 27 18 chr1 152837700 152837812 -44357620 - MIR3 SINE MIR -9 199 87 4 1751 300 111 0 0 chr1 152841250 152841295 -44354137 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 1751 222 37 0 0 chr1 152841313 152841340 -44354092 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 4 1751 193 282 43 76 chr1 152842147 152842239 -44353193 + MIR SINE MIR 73 161 -101 4 1751 368 297 130 0 chr1 152842375 152842560 -44352872 - L1MEc LINE L1 -3519 2800 2592 4 1751 807 286 177 27 chr1 152842622 152842931 -44352501 - L1MEc LINE L1 -5161 1239 892 4 1751 4063 152 31 26 chr1 152842931 152843648 -44351784 + RMER6D LTR ERVK 1 720 0 4 1751 807 286 177 27 chr1 152843648 152843931 -44351501 - L1MEc LINE L1 -5509 891 560 4 1751 347 313 86 27 chr1 152844318 152844505 -44350927 - L1MEc LINE L1 -5991 409 212 4 1751 1365 164 0 9 chr1 152845015 152845242 -44350190 - URR1B DNA MER1_type 0 225 1 4 1751 231 36 0 0 chr1 152845717 152845745 -44349687 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 4 1751 434 200 20 20 chr1 152846703 152846805 -44348627 + B1F SINE Alu 35 136 -13 4 1751 322 120 27 0 chr1 152846808 152846883 -44348549 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1751 261 0 0 0 chr1 152848360 152848389 -44347043 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1751 765 155 0 8 chr1 152850039 152850169 -44345263 + B3 SINE B2 2 130 -86 4 1751 24 0 0 0 chr1 152850209 152850233 -44345199 + AT_rich Low_complexity Low_complexity 1 24 0 4 1751 275 351 67 55 chr1 152851665 152851918 -44343514 - RMER4B LTR ERVK -202 264 9 4 1751 675 277 55 89 chr1 152852024 152852385 -44343047 + L1MC3 LINE L1 6598 6946 -839 4 1751 1815 193 34 34 chr1 152852954 152853361 -44342071 + MTD LTR MaLR 13 419 0 4 1751 1482 68 16 0 chr1 152853402 152853592 -44341840 + B2_Mm2 SINE B2 1 193 -2 4 1751 1943 116 9 12 chr1 152853936 152854258 -44341174 + ORR1A4 LTR MaLR 1 321 -8 4 1751 366 23 0 0 chr1 152854360 152854403 -44341029 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1751 715 256 107 44 chr1 152855254 152855524 -44339908 + B4 SINE B4 2 288 -4 4 1751 234 0 0 0 chr1 152855599 152855625 -44339807 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1751 1096 77 41 6 chr1 152855934 152856103 -44339329 - URR1A DNA MER1_type 0 226 52 4 1751 761 291 189 12 chr1 152856267 152856511 -44338921 + B4A SINE B4 4 290 -2 4 1751 621 0 0 0 chr1 152857322 152857391 -44338041 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 1751 286 344 73 16 chr1 152857581 152857705 -44337727 + MIRb SINE MIR 23 153 -115 4 1751 1662 105 181 33 chr1 152859171 152859507 -44335925 + ORR1B1 LTR MaLR 1 386 -8 4 1751 372 267 86 0 chr1 152859511 152859616 -44335816 + B3A SINE B2 38 151 -47 4 1751 23 68 0 0 chr1 152860539 152860583 -44334849 + AT_rich Low_complexity Low_complexity 1 44 0 4 1751 342 67 0 0 chr1 152860735 152860780 -44334652 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4 1751 1249 81 16 36 chr1 152861182 152861374 -44334058 + B2_Mm2 SINE B2 2 189 -6 4 1751 341 47 0 0 chr1 152861374 152861417 -44334015 - Lx4B LINE L1 -334 6724 6682 4 1751 396 40 0 0 chr1 152861448 152861498 -44333934 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1751 5328 96 24 5 chr1 152862054 152862796 -44332636 - Lx4A LINE L1 -2 7056 6301 4 1751 936 90 21 0 chr1 152863227 152863372 -44332060 - B2_Mm2 SINE B2 -47 148 1 4 1751 1943 22 5 0 chr1 152863449 152863673 -44331759 - L1Md_F2 LINE L1 -653 5929 5705 4 1751 5504 46 10 6 chr1 152863704 152864383 -44331049 + L1Md_F2 LINE L1 5901 6582 0 4 1751 397 360 136 10 chr1 152864440 152864639 -44330793 + MLT1G3 LTR MaLR 18 241 -338 4 1751 437 328 23 23 chr1 152864727 152864902 -44330530 + MLT1G3 LTR MaLR 413 587 -8 4 1751 1275 84 0 0 chr1 152865534 152865712 -44329720 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 1751 570 261 13 40 chr1 152866196 152866423 -44329009 + LTR37B LTR ERV1 239 459 -9 4 1751 1275 103 11 16 chr1 152867524 152867712 -44327720 + B2_Mm2 SINE B2 1 187 -8 4 1751 259 266 37 25 chr1 152867980 152867999 -44327433 - ID4_ SINE ID 0 83 7 4 1751 261 211 53 0 chr1 152867999 152868056 -44327376 - tRNA-Ala-GCY_ tRNA tRNA -15 60 1 4 1751 717 292 92 91 chr1 152868441 152869059 -44326373 + L1MA9 LINE L1 5413 6031 -281 4 1751 1063 151 101 0 chr1 152869077 152869276 -44326156 - URR1A DNA MER1_type -7 219 1 4 1751 183 271 81 23 chr1 152869790 152869877 -44325555 - L2b LINE L2 0 3375 3284 4 1751 21 0 0 0 chr1 152870012 152870033 -44325399 + AT_rich Low_complexity Low_complexity 1 21 0 4 1751 231 285 46 93 chr1 152870340 152870491 -44324941 - L2b LINE L2 -491 2928 2785 4 1751 3211 68 0 0 chr1 152870767 152871204 -44324228 + L1Md_T LINE L1 6174 6582 0 5 1751 285 272 0 28 chr1 152871375 152871481 -44323951 + Lx9 LINE L1 7501 7603 -41 5 1751 1292 256 48 28 chr1 152872981 152873375 -44322057 + Lx8 LINE L1 6298 6699 -774 5 1751 23 33 0 0 chr1 152873705 152873735 -44321697 + AT_rich Low_complexity Low_complexity 1 30 0 5 1751 37 81 0 0 chr1 152873948 152874034 -44321398 + AT_rich Low_complexity Low_complexity 1 86 0 5 1751 180 0 0 0 chr1 152874041 152874061 -44321371 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1751 1610 235 24 18 chr1 152874066 152874447 -44320985 + Lx8 LINE L1 6738 7120 -353 5 1751 2601 189 85 12 chr1 152874547 152875438 -44319994 + RMER12 LTR ERVK 1 1498 -350 5 1751 2016 210 27 41 chr1 152875729 152876241 -44319191 + RLTR17 LTR ERVK 105 609 -83 5 1751 260 242 0 46 chr1 152877302 152877313 -44318119 + B4 SINE B4 77 134 -154 5 1751 331 140 0 0 chr1 152877313 152877363 -44318069 + B1_Mur4 SINE Alu 1 50 -100 5 1751 3189 37 61 0 chr1 152877377 152877754 -44317678 - MTB LTR MaLR 0 400 1 5 1751 263 386 0 8 chr1 152877915 152878035 -44317397 + GA-rich Low_complexity Low_complexity 2 120 0 5 1751 338 238 97 16 chr1 152878036 152878160 -44317272 + L1MA9 LINE L1 6167 6300 -12 5 1751 687 264 7 0 chr1 152878799 152878947 -44316485 - RSINE1 SINE B4 -5 160 12 5 1751 535 251 114 35 chr1 152879549 152879751 -44315681 + Lx8 LINE L1 7256 7473 0 5 1751 207 0 0 0 chr1 152879831 152879854 -44315578 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1751 714 283 33 33 chr1 152880434 152880675 -44314757 - MTD LTR MaLR -148 271 31 5 1751 3515 18 5 2 chr1 152880704 152881099 -44314333 + MTA_Mm LTR MaLR 1 396 0 5 1751 227 272 50 122 chr1 152881099 152881321 -44314111 + L1MC5 LINE L1 7627 7832 -129 5 1751 180 0 0 0 chr1 152881453 152881473 -44313959 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1751 3725 137 12 3 chr1 152881543 152882123 -44313309 + L1_Mur2 LINE L1 5109 5693 -184 5 1751 327 157 292 0 chr1 152882121 152882210 -44313222 + Lx5 LINE L1 6936 7050 0 5 1751 539 271 0 0 chr1 152884319 152884452 -44310980 + B3A SINE B2 1 133 -65 5 1751 4101 70 15 0 chr1 152884452 152884995 -44310437 + L1_Mm LINE L1 4817 5367 -516 5 1751 319 322 84 0 chr1 152885064 152885207 -44310225 - L1MA4 LINE L1 -368 5932 5778 5 1751 201 264 58 58 chr1 152886386 152886563 -44308869 - MIRc SINE MIR -20 188 18 5 1751 21 0 0 0 chr1 152886690 152886711 -44308721 + AT_rich Low_complexity Low_complexity 1 21 0 5 1751 421 151 24 26 chr1 152886733 152886821 -44308611 + B1_Mm SINE Alu 37 142 -5 5 1751 258 0 47 23 chr1 152887705 152887748 -44307684 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 5 1751 196 30 0 57 chr1 152888235 152888270 -44307162 + (CGGGG)n Simple_repeat Simple_repeat 2 34 0 5 1751 252 77 0 0 chr1 152888634 152888673 -44306759 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 5 1751 318 359 69 26 chr1 152889391 152889580 -44305852 + MLT1H LTR MaLR 142 338 -211 5 1751 181 283 88 29 chr1 152889800 152889902 -44305530 - L2 LINE L2 -552 2867 2760 5 1751 444 277 35 28 chr1 152890070 152890215 -44305217 + B1F SINE Alu 3 148 -1 5 1751 1332 142 5 5 chr1 152890653 152890872 -44304560 + URR1B DNA MER1_type 7 225 0 5 1751 963 139 36 137 chr1 152891522 152891771 -44303661 - URR1B DNA MER1_type 0 225 2 5 1751 265 304 58 87 chr1 152892262 152892435 -44302997 - ORR1D1 LTR MaLR -190 184 17 5 1751 324 48 0 0 chr1 152892768 152892810 -44302622 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 5 1751 207 69 0 0 chr1 152893455 152893484 -44301948 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1751 232 245 96 120 chr1 152893787 152893954 -44301478 - MER5B DNA MER1_type -15 163 1 5 1751 312 94 0 0 chr1 152894428 152894481 -44300951 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1751 260 53 0 26 chr1 152894481 152894519 -44300913 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1751 602 136 15 15 chr1 152894589 152894723 -44300709 + (TA)n Simple_repeat Simple_repeat 2 135 0 5 1751 488 307 11 6 chr1 152894906 152895083 -44300349 + (CTG)n Simple_repeat Simple_repeat 1 178 0 5 1751 429 291 14 0 chr1 152895110 152895456 -44299976 + (CTG)n Simple_repeat Simple_repeat 1 351 0 5 1751 26 0 0 0 chr1 152896262 152896288 -44299144 + AT_rich Low_complexity Low_complexity 1 26 0 5 1751 1111 112 53 0 chr1 152897890 152898060 -44297372 + B2_Mm1t SINE B2 1 179 -14 5 1751 389 73 0 0 chr1 152898088 152898143 -44297289 + B2_Mm2 SINE B2 47 101 -94 5 1751 33 0 0 0 chr1 152898159 152898192 -44297240 + AT_rich Low_complexity Low_complexity 1 33 0 5 1751 458 209 150 30 chr1 152898232 152898365 -44297067 - Lx5 LINE L1 -634 6416 6268 5 1751 1445 251 93 52 chr1 152898372 152899085 -44296347 + Lx6 LINE L1 6454 7434 -26 5 1751 27 29 0 0 chr1 152899152 152899186 -44296246 + AT_rich Low_complexity Low_complexity 1 34 0 5 1751 3441 95 13 101 chr1 152899241 152899408 -44296024 + MT2B2 LTR ERVL 1 168 -416 5 1751 1366 84 28 0 chr1 152899408 152899586 -44295846 + B2_Mm2 SINE B2 3 185 -10 5 1751 3441 95 13 101 chr1 152899586 152900050 -44295382 + MT2B2 LTR ERVL 169 576 -8 5 1751 337 367 41 87 chr1 152900268 152900635 -44294797 - L2b LINE L2 -1 3374 3025 5 1751 504 0 0 0 chr1 152900636 152900692 -44294740 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1751 525 205 55 8 chr1 152900697 152900825 -44294607 + MTD LTR MaLR 2 135 -284 5 1751 553 183 17 34 chr1 152900800 152900919 -44294513 + MTD LTR MaLR 303 419 0 5 1751 288 20 61 0 chr1 152900965 152901014 -44294418 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1751 330 266 42 84 chr1 152901241 152901361 -44294071 + PB1D7 SINE Alu 17 132 -16 5 1751 724 172 13 13 chr1 152902374 152902533 -44292899 + CT-rich Low_complexity Low_complexity 3 161 0 5 1751 237 370 0 0 chr1 152902560 152902633 -44292799 - ID4_ SINE ID -10 73 1 5 1751 443 265 23 8 chr1 152902662 152902795 -44292637 - B1F SINE Alu -14 135 1 5 1751 23 0 0 0 chr1 152903450 152903473 -44291959 + AT_rich Low_complexity Low_complexity 1 23 0 5 1751 513 212 0 0 chr1 152903935 152904053 -44291379 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 1751 851 230 40 5 chr1 152905047 152905270 -44290162 - RCHARR1 DNA MER1_type -6 968 738 5 1751 269 224 0 33 chr1 152905279 152905339 -44290093 + PB1D9 SINE Alu 2 59 -61 5 1751 387 256 0 0 chr1 152905349 152905581 -44289851 + GA-rich Low_complexity Low_complexity 1 232 0 5 1751 276 41 0 155 chr1 152905584 152905642 -44289790 + 4.5SRNA scRNA scRNA 38 86 -8 5 1751 657 128 0 0 chr1 152905592 152905694 -44289738 + B1_Mur4 SINE Alu 43 144 -6 5 1751 246 62 0 0 chr1 152905699 152905731 -44289701 + (CAT)n Simple_repeat Simple_repeat 2 33 0 5 1751 1753 262 42 28 chr1 152905733 152906158 -44289274 - RCHARR1 DNA MER1_type -242 732 295 5 1751 1414 136 4 52 chr1 152906158 152906391 -44289041 + URR1A DNA MER1_type 5 226 0 5 1751 1753 263 359 15 chr1 152906391 152906606 -44288826 - RCHARR1 DNA MER1_type -680 294 10 5 1751 475 273 7 14 chr1 152906622 152906767 -44288665 + RSINE1 SINE B4 22 165 0 5 1751 495 87 0 0 chr1 152907655 152907724 -44287708 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1751 6385 50 0 5 chr1 152908356 152909133 -44286299 - L1Md_F2 LINE L1 -12 6570 5798 5 1751 994 9 0 0 chr1 152909133 152909240 -44286192 - U6 snRNA snRNA 0 107 1 5 1751 996 207 302 9 chr1 152910496 152910814 -44284618 - MTD LTR MaLR -8 411 1 5 1751 636 146 174 47 chr1 152913979 152914151 -44281281 - B2_Mm2 SINE B2 0 195 2 5 1751 519 279 100 41 chr1 152914285 152914651 -44280781 + Lx9 LINE L1 5382 5755 -1941 5 1751 236 152 60 18 chr1 152914652 152914820 -44280612 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 1751 531 248 70 38 chr1 152914820 152915121 -44280311 + Lx9 LINE L1 5727 6020 -1624 5 1751 203 88 0 29 chr1 152915285 152915320 -44280112 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1751 3871 262 109 23 chr1 152915375 152916688 -44278744 + Lx8 LINE L1 6046 7471 -2 5 1751 279 0 0 0 chr1 152916933 152916964 -44278468 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1751 1086 193 18 13 chr1 152917858 152918084 -44277348 + MTD LTR MaLR 185 411 -8 5 1751 860 191 26 109 chr1 152918257 152918486 -44276946 - B3 SINE B2 -5 211 2 5 1751 232 306 10 30 chr1 152918800 152918901 -44276531 - MLT1A0 LTR MaLR -6 359 261 5 1751 334 103 69 0 chr1 152918918 152918976 -44276456 + MTC LTR MaLR 265 326 -95 5 1751 6413 74 15 6 chr1 152919589 152920440 -44274992 - Lx2 LINE L1 0 6997 6139 5 1751 1145 79 6 0 chr1 152921413 152921578 -44273854 + B2_Mm1t SINE B2 9 174 -19 5 1751 22 0 0 0 chr1 152921637 152921659 -44273773 + AT_rich Low_complexity Low_complexity 1 22 0 5 1751 482 184 0 0 chr1 152924411 152924498 -44270934 - PB1D7 SINE Alu -1 119 33 5 1751 509 257 234 0 chr1 152924501 152924676 -44270756 - B3 SINE B2 0 216 1 5 1751 348 356 0 0 chr1 152924796 152924886 -44270546 + PB1D10 SINE Alu 2 91 -26 5 1751 927 279 70 24 chr1 152924886 152925216 -44270216 + RMER5 LTR ERV1 1 345 -189 5 1751 352 210 0 29 chr1 152925242 152925345 -44270087 + GA-rich Low_complexity Low_complexity 4 103 0 5 1751 215 170 21 0 chr1 152925932 152925979 -44269453 + (TTA)n Simple_repeat Simple_repeat 1 48 0 5 1751 181 335 144 23 chr1 152926909 152927083 -44268349 + L2c LINE L2 3015 3209 -178 5 1751 26 30 0 0 chr1 152928540 152928573 -44266859 + AT_rich Low_complexity Low_complexity 1 33 0 5 1751 516 213 65 22 chr1 152928661 152928800 -44266632 - B3A SINE B2 -53 145 1 5 1751 970 280 31 17 chr1 152929187 152929539 -44265893 - L1MA5 LINE L1 0 6300 5944 5 1751 369 239 21 11 chr1 152929542 152929635 -44265797 + L1MA5 LINE L1 5845 5938 -362 5 1751 527 335 102 18 chr1 152929862 152930254 -44265178 + L2 LINE L2 2043 2467 -952 5 1751 901 256 102 22 chr1 152930433 152930748 -44264684 - ORR1E LTR MaLR -17 342 3 5 1751 791 236 20 151 chr1 152930920 152931219 -44264213 + ORR1D2 LTR MaLR 4 263 -107 6 1751 1072 15 86 0 chr1 152931224 152931560 -44263872 + (CCTG)n Simple_repeat Simple_repeat 1 364 0 6 1751 745 176 14 33 chr1 152931627 152931821 -44263611 + ORR1D1 LTR MaLR 162 374 0 6 1751 358 311 85 109 chr1 152931919 152932341 -44263091 + L1MEb LINE L1 39 450 -5620 6 1751 800 117 66 0 chr1 152934591 152934728 -44260704 - RLTR14 LTR ERV1 0 382 237 6 1751 1238 185 33 44 chr1 152936058 152936330 -44259102 + RLTR14 LTR ERV1 113 381 -1 6 1751 247 211 0 40 chr1 152936484 152936558 -44258874 + Lx7 LINE L1 7606 7676 -20 6 1751 540 165 92 34 chr1 152936640 152936759 -44258673 + B1_Mur1 SINE Alu 19 144 -5 6 1751 207 190 0 0 chr1 152937798 152937856 -44257576 + T-rich Low_complexity Low_complexity 1 58 0 6 1751 347 193 12 0 chr1 152938605 152938688 -44256744 + GA-rich Low_complexity Low_complexity 4 87 0 6 1751 366 306 21 63 chr1 152938773 152938916 -44256516 - MTEb LTR MaLR -242 137 1 6 1751 936 105 0 0 chr1 152940260 152940412 -44255020 + (TG)n Simple_repeat Simple_repeat 2 153 0 6 1751 1286 158 13 9 chr1 152940515 152940739 -44254693 + URR1A DNA MER1_type 2 226 0 6 1751 5324 181 68 8 chr1 152941324 152942384 -44253048 + Lx2B LINE L1 5873 6996 -4 6 1751 845 163 208 0 chr1 152942407 152942585 -44252847 + B3 SINE B2 2 216 0 6 1751 225 167 0 0 chr1 152943228 152943270 -44252162 + G-rich Low_complexity Low_complexity 1 42 0 6 1751 347 218 10 0 chr1 152943794 152943895 -44251537 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 1751 345 100 0 0 chr1 152944197 152944247 -44251185 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1751 232 319 0 14 chr1 152944661 152944734 -44250698 + GA-rich Low_complexity Low_complexity 1 72 0 6 1751 294 29 0 0 chr1 152944789 152944824 -44250608 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1751 233 57 29 0 chr1 152945483 152945518 -44249914 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 6 1751 655 209 78 0 chr1 152946382 152946511 -44248921 - B1_Mur1 SINE Alu -10 139 1 6 1751 278 279 0 42 chr1 152946627 152946698 -44248734 + ID4_ SINE ID 16 83 0 6 1751 220 27 26 26 chr1 152946871 152946909 -44248523 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1751 1502 139 0 9 chr1 152947443 152947668 -44247764 - URR1A DNA MER1_type -3 223 1 6 1751 522 257 32 39 chr1 152948077 152948101 -44247331 + RSINE1 SINE B4 3 24 -141 6 1751 2748 136 2 7 chr1 152948101 152948524 -44246908 + MTC LTR MaLR 1 421 0 6 1751 522 257 32 39 chr1 152948524 152948653 -44246779 + RSINE1 SINE B4 25 155 -10 6 1751 706 276 42 40 chr1 152948698 152949025 -44246407 - L1MC1 LINE L1 -23 6321 5993 6 1751 234 0 0 0 chr1 152951311 152951337 -44244095 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1751 51 0 0 0 chr1 152951867 152951918 -44243514 + AT_rich Low_complexity Low_complexity 1 51 0 6 1751 1971 94 0 7 chr1 152951957 152952235 -44243197 - L1_Mus4 LINE L1 -4 6632 6357 6 1751 784 284 34 47 chr1 152953014 152953310 -44242122 - B4A SINE B4 0 292 1 6 1751 226 259 35 12 chr1 152953572 152953658 -44241774 - MER53 DNA hAT -7 186 99 6 1751 252 307 108 42 chr1 152953722 152953936 -44241496 - MLT1J LTR MaLR -204 308 81 6 1751 403 291 39 0 chr1 152954006 152954133 -44241299 - MLT1A0 LTR MaLR -7 358 227 6 1751 391 301 31 31 chr1 152954343 152954504 -44240928 - MLT1A0 LTR MaLR -247 161 1 6 1751 414 0 0 0 chr1 152955272 152955318 -44240114 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1751 202 233 23 0 chr1 152956363 152956406 -44239026 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1751 742 289 39 20 chr1 152956412 152956666 -44238766 - B4A SINE B4 -6 286 28 6 1751 186 43 0 0 chr1 152957434 152957457 -44237975 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1751 1286 238 48 48 chr1 152957585 152957978 -44237454 - MTD LTR MaLR -14 405 13 6 1751 239 155 15 108 chr1 152958585 152958650 -44236782 + L1MA10 LINE L1 6266 6324 -10 6 1751 2758 141 92 14 chr1 152959216 152959706 -44235726 - RLTR11A LTR ERVK 0 528 1 6 1751 508 145 57 0 chr1 152959817 152959941 -44235491 + G-rich Low_complexity Low_complexity 4 134 0 6 1751 932 186 112 12 chr1 152959943 152960183 -44235249 + RMER4B LTR ERVK 16 279 -306 6 1751 386 169 14 0 chr1 152960357 152960428 -44235004 + RMER4B LTR ERVK 343 414 -171 6 1751 1728 124 63 63 chr1 152960453 152960772 -44234660 + ORR1A2 LTR MaLR 1 319 -8 6 1751 249 222 0 0 chr1 152960777 152960831 -44234601 + RMER4B LTR ERVK 472 525 -60 6 1752 3553 256 86 51 chr1 152961099 152961158 -44234274 + Lx9 LINE L1 6288 6339 -1305 6 1752 474 18 0 0 chr1 152961158 152961213 -44234219 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1752 3553 256 86 51 chr1 152961213 152961780 -44233652 + Lx9 LINE L1 6340 6921 -723 6 1752 1243 79 79 0 chr1 152961780 152961958 -44233474 - B2_Mm1t SINE B2 0 193 2 6 1752 3553 248 95 49 chr1 152961958 152962530 -44232902 + Lx9 LINE L1 6922 7572 -72 6 1752 1836 232 26 22 chr1 152962530 152963033 -44232399 + RLTR16 LTR ERVK 1 505 0 6 1752 358 187 158 36 chr1 152963033 152963100 -44232332 + Lx9 LINE L1 7573 7639 -5 6 1752 386 200 12 42 chr1 152964054 152964105 -44231327 + polypurine Low_complexity Low_complexity 3 52 0 6 1752 1498 11 0 11 chr1 152964105 152964287 -44231145 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 6 1752 386 200 12 42 chr1 152964287 152964402 -44231030 + GA-rich Low_complexity Low_complexity 53 164 0 6 1752 498 75 0 0 chr1 152964809 152964876 -44230556 + (TCC)n Simple_repeat Simple_repeat 3 69 0 6 1752 269 254 42 14 chr1 152964884 152964956 -44230476 - B4 SINE B4 -166 126 53 6 1752 408 281 66 7 chr1 152965150 152965286 -44230146 - B1F1 SINE Alu -5 144 1 6 1752 933 333 97 29 chr1 152965698 152966181 -44229251 + MLT1F1 LTR MaLR 30 545 -24 6 1752 1461 304 53 46 chr1 152966588 152967136 -44228296 + MLT1F2 LTR MaLR 9 560 0 6 1752 1126 101 0 0 chr1 152968282 152968430 -44227002 + B1_Mus1 SINE Alu 1 148 0 6 1752 690 13 0 0 chr1 152968437 152968516 -44226916 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1752 191 173 0 19 chr1 152969087 152969140 -44226292 + T-rich Low_complexity Low_complexity 2 53 0 6 1752 1066 175 0 0 chr1 152969177 152969360 -44226072 + MTD LTR MaLR 1 183 -236 6 1752 2561 92 0 9 chr1 152969372 152969711 -44225721 - L1_Mm LINE L1 -175 5708 5373 6 1752 2587 83 8 8 chr1 152969697 152970050 -44225382 + L1_Mus4 LINE L1 6199 6551 -85 6 1752 904 195 67 50 chr1 152970050 152970091 -44225341 + MTD LTR MaLR 173 206 -213 6 1752 450 49 0 0 chr1 152970091 152970152 -44225280 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 6 1752 904 195 67 50 chr1 152970152 152970348 -44225084 + MTD LTR MaLR 207 414 -5 6 1752 216 289 48 0 chr1 152971445 152971528 -44223904 - MER5A DNA MER1_type -69 120 34 6 1752 265 302 72 10 chr1 152971545 152971642 -44223790 + MTEb LTR MaLR 22 124 -235 6 1752 328 239 22 11 chr1 152971795 152971884 -44223548 + MTEb LTR MaLR 278 367 -12 6 1752 933 150 205 16 chr1 152972052 152972242 -44223190 - URR1A DNA MER1_type 0 226 1 6 1752 236 278 109 80 chr1 152972393 152972530 -44222902 + MamGypLTR1d LTR Gypsy 91 231 -572 6 1752 311 192 163 60 chr1 152973284 152973399 -44222033 + L1M2 LINE L1 5117 5248 -895 6 1752 940 246 243 0 chr1 152973399 152973591 -44221841 + MTEa LTR MaLR 1 198 -181 6 1752 743 0 11 0 chr1 152973591 152973678 -44221754 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1752 940 246 243 0 chr1 152973678 152973790 -44221642 + MTEa LTR MaLR 199 378 -1 6 1752 311 192 163 60 chr1 152973790 152973840 -44221592 + L1M2 LINE L1 5249 5299 -844 6 1752 558 108 0 0 chr1 152973840 152973923 -44221509 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 6 1752 781 261 23 43 chr1 152973955 152974211 -44221221 + L1M2 LINE L1 5314 5564 -733 6 1752 229 220 0 0 chr1 152974224 152974274 -44221158 - RMER21B LTR ERV1 -13 829 780 6 1752 474 232 205 26 chr1 152974258 152974448 -44220984 - RMER21B LTR ERV1 -271 571 348 6 1752 232 106 42 21 chr1 152974567 152974615 -44220817 + L1M2 LINE L1 5558 5606 -583 6 1752 22 0 0 0 chr1 152975693 152975715 -44219717 + AT_rich Low_complexity Low_complexity 1 22 0 6 1752 442 235 0 10 chr1 152976472 152976575 -44218857 - MER106B DNA MER1_type -929 130 29 6 1752 806 186 0 17 chr1 152976688 152976868 -44218564 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1752 244 332 104 30 chr1 152976890 152977092 -44218340 + MER58A DNA MER1_type 7 223 -1 6 1752 385 268 0 0 chr1 152979514 152979596 -44215836 + ID SINE ID 1 82 -142 6 1752 2833 116 6 37 chr1 152979589 152979607 -44215825 - RLTR20A1 LTR ERVK -84 467 452 6 1752 294 29 0 0 chr1 152979607 152979642 -44215790 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1752 2833 116 6 37 chr1 152979642 152980105 -44215327 - RLTR20A1 LTR ERVK -100 451 1 6 1752 549 0 0 0 chr1 152980193 152980254 -44215178 + (GAA)n Simple_repeat Simple_repeat 3 63 0 6 1752 5134 70 19 7 chr1 152980354 152981033 -44214399 - L1Md_F2 LINE L1 -1 6581 5895 6 1752 6229 66 0 0 chr1 152981033 152981809 -44213623 + L1Md_F2 LINE L1 5108 5883 0 6 1752 1054 112 135 0 chr1 152981816 152981986 -44213446 - B2_Mm2 SINE B2 -1 194 2 6 1752 450 0 0 0 chr1 152982047 152982097 -44213335 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1752 250 318 54 18 chr1 152982687 152982799 -44212633 + PB1D7 SINE Alu 3 118 -2 6 1752 28 29 0 0 chr1 152982954 152982989 -44212443 + AT_rich Low_complexity Low_complexity 1 35 0 6 1752 3203 29 48 3 chr1 152984345 152984724 -44210708 + MTA_Mm LTR MaLR 1 396 0 6 1752 183 80 0 0 chr1 152985462 152985487 -44209945 + (TCC)n Simple_repeat Simple_repeat 1 25 0 6 1752 351 0 0 0 chr1 152985513 152985552 -44209880 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1752 644 285 92 52 chr1 152986275 152986656 -44208776 - MLT1C LTR MaLR 0 467 72 6 1752 467 248 41 34 chr1 152986873 152987019 -44208413 + ID_B1 SINE B4 78 224 0 6 1752 386 239 11 32 chr1 152988969 152989064 -44206368 - PB1D10 SINE Alu -1 116 24 6 1752 540 285 276 0 chr1 152990454 152990668 -44204764 + B4 SINE B4 3 275 -17 6 1752 189 0 0 0 chr1 152990701 152990722 -44204710 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1752 479 311 37 0 chr1 152990737 152990872 -44204560 + B1F SINE Alu 1 140 -9 6 1752 2079 170 28 135 chr1 152991639 152992203 -44203229 + RLTR18B LTR ERVK 1 504 -8 6 1752 384 302 209 18 chr1 152992329 152992456 -44202976 - Lx9 LINE L1 -15 7629 7491 6 1752 230 81 27 0 chr1 152992456 152992493 -44202939 + (TATG)n Simple_repeat Simple_repeat 3 40 0 6 1752 384 302 209 18 chr1 152992493 152992536 -44202896 - Lx9 LINE L1 -154 7490 7420 6 1752 387 0 0 0 chr1 152992536 152992579 -44202853 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1752 216 0 0 0 chr1 152992579 152992602 -44202830 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1752 384 302 209 18 chr1 152992602 152992769 -44202663 - Lx9 LINE L1 -225 7419 7227 6 1752 242 277 0 30 chr1 152992815 152992882 -44202550 - Lx9 LINE L1 -532 7112 7048 6 1752 28 29 0 0 chr1 152993594 152993629 -44201803 + AT_rich Low_complexity Low_complexity 1 35 0 7 1752 468 306 0 16 chr1 152993702 152993828 -44201604 + RSINE1 SINE B4 42 165 0 7 1752 279 79 0 0 chr1 152993852 152993890 -44201542 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 7 1752 217 281 17 26 chr1 152994082 152994199 -44201233 - MIR SINE MIR 0 262 147 7 1752 473 301 52 35 chr1 152994625 152994797 -44200635 + B3A SINE B2 23 197 -1 7 1752 660 87 0 0 chr1 152994797 152994889 -44200543 + (GGA)n Simple_repeat Simple_repeat 2 93 0 7 1752 3347 118 13 29 chr1 152994918 152995370 -44200062 + RMER15 LTR ERVL 34 484 -91 7 1752 2615 130 5 20 chr1 152995370 152995779 -44199653 - MTB_Mm LTR MaLR 0 407 5 7 1752 3347 118 13 29 chr1 152995779 152995877 -44199555 + RMER15 LTR ERVL 485 575 0 7 1752 852 273 96 14 chr1 152995981 152996274 -44199158 - L1MA8 LINE L1 -439 5852 5536 7 1752 234 143 0 0 chr1 152996386 152996435 -44198997 + (A)n Simple_repeat Simple_repeat 1 49 0 7 1752 287 349 97 52 chr1 152996963 152997211 -44198221 - MLT1D LTR MaLR -225 280 22 7 1752 606 298 153 20 chr1 152997519 152997820 -44197612 + ORR1E LTR MaLR 19 359 0 7 1752 339 25 0 0 chr1 152998071 152998111 -44197321 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 7 1752 342 62 0 0 chr1 152998872 152998920 -44196512 - HAL1-3A_ME LINE L1 -835 2023 1976 7 1752 547 271 78 19 chr1 152998972 152999126 -44196306 - RSINE1 SINE B4 0 165 3 7 1752 331 333 83 31 chr1 152999398 152999652 -44195780 + ERVL-E-int LTR ERVL 2287 2553 -3114 7 1752 345 100 0 0 chr1 152999950 153000000 -44195432 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 7 1752 1258 58 29 6 chr1 153000773 153000947 -44194485 - RLTR13B4 LTR ERVK 0 893 716 1 1752 2933 73 23 103 chr1 153000936 153001458 -44193974 - RLTR13B4 LTR ERVK -323 480 1 1 1752 259 185 9 132 chr1 153002710 153002816 -44192616 - Lx7 LINE L1 -231 7465 7373 2 1752 2579 196 32 60 chr1 153002815 153003444 -44191988 - Lx7 LINE L1 -282 7414 6804 3 1752 238 296 70 49 chr1 153003907 153004049 -44191383 + MLT1N2 LTR MaLR 190 334 -228 4 1752 31 26 0 0 chr1 153004391 153004429 -44191003 + AT_rich Low_complexity Low_complexity 1 38 0 5 1752 742 275 6 6 chr1 153006059 153006231 -44189201 + B3 SINE B2 2 173 -43 6 1752 22 0 0 0 chr1 153006250 153006272 -44189160 + AT_rich Low_complexity Low_complexity 1 22 0 7 1752 315 71 0 0 chr1 153006779 153006821 -44188611 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 8 1752 1706 185 58 25 chr1 153008428 153008789 -44186643 - ORR1D1 LTR MaLR 0 374 2 9 1752 3354 156 56 9 chr1 153008790 153009481 -44185951 - ORR1D1-int LTR MaLR 0 1509 786 9 1752 381 22 0 0 chr1 153009515 153009561 -44185871 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1752 240 299 35 0 chr1 153009598 153009685 -44185747 + L1MC LINE L1 5545 5634 -710 1 1752 299 239 0 15 chr1 153009757 153009825 -44185607 + ID SINE ID 8 74 -150 1 1752 291 212 173 12 chr1 153010033 153010114 -44185318 + B4A SINE B4 199 292 0 1 1752 203 300 17 0 chr1 153010115 153010175 -44185257 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1752 702 255 113 20 chr1 153010245 153010449 -44184983 - ID_B1 SINE B4 0 224 2 1 1752 195 129 0 0 chr1 153010573 153010604 -44184828 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1752 186 43 0 0 chr1 153011259 153011282 -44184150 + (GTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1752 517 306 57 78 chr1 153012391 153012674 -44182758 + B4A SINE B4 15 291 -1 1 1752 200 122 24 0 chr1 153012695 153012736 -44182696 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1752 294 29 0 0 chr1 153013885 153013920 -44181512 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1752 616 236 84 21 chr1 153016028 153016266 -44179166 + L1MA5 LINE L1 5652 5904 -396 2 1752 297 0 0 0 chr1 153016325 153016358 -44179074 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1752 195 42 0 0 chr1 153016915 153016939 -44178493 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1752 378 0 0 0 chr1 153016939 153016980 -44178452 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1752 452 241 114 44 chr1 153017582 153017852 -44177580 + MER33 DNA MER1_type 6 214 -110 2 1752 354 213 13 0 chr1 153017872 153017947 -44177485 - PB1D10 SINE Alu -13 104 29 2 1752 279 114 0 0 chr1 153018160 153018204 -44177228 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1752 892 237 21 16 chr1 153019531 153019720 -44175712 + B3A SINE B2 2 191 -7 2 1752 882 290 41 22 chr1 153019720 153020218 -44175214 + L1MC4a LINE L1 6866 7397 -485 2 1752 2970 121 18 8 chr1 153020245 153020738 -44174694 - Lx LINE L1 -845 5038 4579 3 1752 694 163 14 0 chr1 153020748 153020889 -44174543 + CT-rich Low_complexity Low_complexity 2 144 0 3 1752 560 218 48 0 chr1 153020889 153021013 -44174419 - B1_Mur1 SINE Alu 0 149 20 3 1752 3401 61 19 0 chr1 153021224 153021652 -44173780 - L1Md_F3 LINE L1 -14 6570 6135 3 1752 791 309 75 8 chr1 153021655 153022056 -44173376 + L1MC4a LINE L1 7560 7987 -8 2 1752 387 274 17 58 chr1 153022162 153022282 -44173150 - RMER30 DNA MER1_type -87 115 1 3 1752 24 32 0 0 chr1 153022506 153022537 -44172895 + AT_rich Low_complexity Low_complexity 1 31 0 3 1752 279 54 0 0 chr1 153022555 153022592 -44172840 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1752 220 301 82 24 chr1 153023377 153023462 -44171970 - L2 LINE L2 -553 2866 2777 3 1752 317 331 54 0 chr1 153023485 153023633 -44171799 - L2 LINE L2 -737 2682 2527 3 1752 480 158 0 0 chr1 153023646 153023741 -44171691 + (CAATA)n Simple_repeat Simple_repeat 2 96 0 3 1752 361 267 112 15 chr1 153023741 153023946 -44171486 - RMER10A LTR ERVL -17 425 201 3 1752 366 86 157 9 chr1 153023970 153024049 -44171383 + Lx2 LINE L1 6918 6997 0 4 1752 295 219 0 30 chr1 153024049 153024148 -44171284 - RMER10A LTR ERVL -217 225 130 3 1752 389 163 113 75 chr1 153024651 153024784 -44170648 - RMER10A LTR ERVL -304 138 1 3 1752 194 333 79 33 chr1 153024784 153024936 -44170496 - L2 LINE L2 -887 2532 2374 3 1752 21 0 0 0 chr1 153025476 153025497 -44169935 + AT_rich Low_complexity Low_complexity 1 21 0 4 1752 198 103 0 0 chr1 153025567 153025596 -44169836 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1752 1353 74 11 0 chr1 153026235 153026410 -44169022 + B2_Mm1t SINE B2 3 179 -14 4 1752 304 148 316 16 chr1 153026442 153026556 -44168876 + B2_Mm2 SINE B2 47 194 -1 4 1752 333 82 0 0 chr1 153026556 153026605 -44168827 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 4 1752 789 349 113 5 chr1 153026861 153027302 -44168130 - MLT1E2 LTR MaLR -2 625 137 4 1752 6960 110 51 4 chr1 153028116 153029504 -44165928 + Lx LINE L1 5206 6649 -5 4 1752 23 68 0 0 chr1 153031346 153031390 -44164042 + AT_rich Low_complexity Low_complexity 1 44 0 4 1752 956 122 0 0 chr1 153031673 153031812 -44163620 + B1_Mus1 SINE Alu 3 141 -7 4 1752 675 213 0 0 chr1 153031821 153031948 -44163484 - URR1B DNA MER1_type -97 128 2 5 1752 188 304 18 18 chr1 153032007 153032064 -44163368 + L2a LINE L2 3312 3368 -58 5 1752 576 65 0 0 chr1 153033894 153033971 -44161461 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 5 1752 7199 75 12 4 chr1 153034554 153035511 -44159921 + L1_Mus3 LINE L1 5674 6638 0 5 1752 261 0 0 0 chr1 153035755 153035784 -44159648 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1752 491 206 92 49 chr1 153036060 153036244 -44159188 - B2_Mm2 SINE B2 -3 192 1 5 1752 15910 86 5 3 chr1 153036553 153039312 -44156120 + Lx LINE L1 3886 6649 -5 5 1752 22 70 0 0 chr1 153041155 153041198 -44154234 + AT_rich Low_complexity Low_complexity 1 43 0 5 1752 184 365 32 0 chr1 153041265 153041328 -44154104 + MIRc SINE MIR 9 73 -195 5 1752 964 115 0 0 chr1 153041481 153041620 -44153812 + B1_Mus1 SINE Alu 3 141 -7 5 1752 675 213 0 0 chr1 153041629 153041756 -44153676 - URR1B DNA MER1_type -97 128 2 6 1752 188 304 18 18 chr1 153041815 153041872 -44153560 + L2a LINE L2 3312 3368 -58 6 1752 696 24 0 0 chr1 153043708 153043790 -44151642 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 6 1752 5952 162 15 4 chr1 153044333 153045342 -44150090 + Lx LINE L1 5657 6649 -5 6 1752 21 71 0 0 chr1 153047182 153047224 -44148208 + AT_rich Low_complexity Low_complexity 1 42 0 6 1752 184 365 32 0 chr1 153047291 153047354 -44148078 + MIRc SINE MIR 9 73 -195 6 1752 1024 98 0 0 chr1 153047507 153047650 -44147782 + B1_Mus1 SINE Alu 3 145 -3 6 1752 659 216 0 0 chr1 153047659 153047784 -44147648 - URR1B DNA MER1_type -99 126 2 6 1752 188 304 18 18 chr1 153047843 153047900 -44147532 + L2a LINE L2 3312 3368 -58 6 1752 198 71 0 0 chr1 153049207 153049235 -44146197 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1752 345 24 0 0 chr1 153049738 153049780 -44145652 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 7 1752 3879 169 21 7 chr1 153050378 153051057 -44144375 + Lx LINE L1 5962 6649 -5 7 1752 24 67 0 0 chr1 153052897 153052942 -44142490 + AT_rich Low_complexity Low_complexity 1 45 0 7 1752 952 122 0 0 chr1 153053225 153053364 -44142068 + B1_Mus1 SINE Alu 3 141 -7 7 1752 698 205 0 0 chr1 153053373 153053500 -44141932 - URR1B DNA MER1_type -97 128 2 7 1752 188 304 18 18 chr1 153053559 153053616 -44141816 + L2a LINE L2 3312 3368 -58 7 1752 198 71 0 0 chr1 153054923 153054951 -44140481 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1752 468 35 0 0 chr1 153055454 153055512 -44139920 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 7 1752 6018 160 16 4 chr1 153056055 153057064 -44138368 + Lx LINE L1 5657 6649 -5 7 1752 21 71 0 0 chr1 153058904 153058946 -44136486 + AT_rich Low_complexity Low_complexity 1 42 0 7 1752 1629 72 32 0 chr1 153059206 153059427 -44136005 + L1Md_F2 LINE L1 6354 6581 -1 8 1752 22 35 0 0 chr1 153059594 153059623 -44135809 + AT_rich Low_complexity Low_complexity 1 29 0 8 1752 3119 190 136 25 chr1 153059850 153060594 -44134838 - RMER19B LTR ERVK -6 896 71 8 1752 186 312 110 18 chr1 153061045 153061208 -44134224 + MIRb SINE MIR 67 244 -24 8 1752 22 0 0 0 chr1 153062060 153062082 -44133350 + AT_rich Low_complexity Low_complexity 1 22 0 8 1752 21 0 0 0 chr1 153062391 153062412 -44133020 + AT_rich Low_complexity Low_complexity 1 21 0 8 1752 192 257 267 0 chr1 153063076 153063181 -44132251 - L2b LINE L2 -219 3156 3024 8 1752 180 0 0 0 chr1 153063210 153063230 -44132202 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1752 1027 241 112 33 chr1 153063250 153063641 -44131791 - RLTR28B LTR ERVL -51 430 9 8 1752 228 304 272 0 chr1 153063957 153064049 -44131383 + RSINE1 SINE B4 49 165 0 8 1752 376 271 88 24 chr1 153064191 153064316 -44131116 - MLT1B LTR MaLR -52 338 206 9 1752 251 267 181 0 chr1 153064860 153064965 -44130467 + L1MEc LINE L1 1203 1326 -5074 9 1752 234 208 0 0 chr1 153064934 153064982 -44130450 + L1M2c LINE L1 2110 2157 -4632 9 1752 527 257 121 2 chr1 153065224 153065466 -44129966 + L1MEc LINE L1 1614 1875 -4540 9 1752 489 200 154 0 chr1 153065542 153065652 -44129780 - ID_B1 SINE B4 -7 217 91 9 1752 1366 151 118 33 chr1 153066313 153066642 -44128790 - Lx9 LINE L1 0 7644 7288 9 1752 207 0 0 0 chr1 153066819 153066842 -44128590 + (CCA)n Simple_repeat Simple_repeat 3 25 0 9 1752 258 224 17 0 chr1 153066894 153066952 -44128480 - MTE2a LTR MaLR -317 62 4 9 1752 317 291 50 93 chr1 153067060 153067109 -44128323 + MLT1A LTR MaLR 29 71 -303 9 1752 2233 103 63 89 chr1 153067109 153067523 -44127909 - RLTR9D LTR ERVK 0 403 1 9 1752 317 291 50 93 chr1 153067523 153067655 -44127777 + MLT1A LTR MaLR 72 202 -172 9 1752 213 137 82 31 chr1 153067728 153067826 -44127606 + (TTATA)n Simple_repeat Simple_repeat 5 107 0 9 1752 256 262 71 0 chr1 153067829 153067913 -44127519 + MLT1A LTR MaLR 285 374 0 9 1752 395 275 124 47 chr1 153067916 153068216 -44127216 + L1MC4a LINE L1 7297 7637 -405 1 1752 374 297 16 0 chr1 153068253 153068381 -44127051 + L1MC4a LINE L1 7749 7878 -4 1 1752 553 300 19 6 chr1 153068399 153068560 -44126872 - RSINE1 SINE B4 0 165 3 1 1752 359 255 20 0 chr1 153069244 153069342 -44126090 - MLT1D LTR MaLR -18 487 388 1 1752 3700 178 53 52 chr1 153069375 153070278 -44125154 + RMER13B LTR ERVK 1 904 -4 1 1752 315 273 90 8 chr1 153070420 153070553 -44124879 - MLT1D LTR MaLR -350 155 12 1 1752 739 224 179 0 chr1 153071091 153071270 -44124162 + B3 SINE B2 1 211 -5 1 1752 210 308 0 0 chr1 153071645 153071697 -44123735 + MIR SINE MIR 40 91 -171 1 1752 507 298 65 37 chr1 153071806 153072022 -44123410 + MLT2C1 LTR ERVL 58 279 -118 1 1752 269 225 14 0 chr1 153072630 153072701 -44122731 - L1MA5 LINE L1 -23 6277 6206 1 1752 429 265 113 108 chr1 153072914 153073100 -44122332 - B3A SINE B2 0 198 12 1 1752 1216 110 40 6 chr1 153073191 153073365 -44122067 + B2_Mm2 SINE B2 2 181 -14 1 1752 699 244 10 6 chr1 153073403 153073583 -44121849 - B3 SINE B2 -12 204 24 1 1752 201 146 0 0 chr1 153075426 153075474 -44119958 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 1 1752 280 296 44 6 chr1 153076489 153076596 -44118836 - PB1D10 SINE Alu -1 119 3 1 1752 255 191 0 0 chr1 153076711 153076750 -44118682 + URR1B DNA MER1_type 6 44 -181 1 1752 741 220 117 44 chr1 153076750 153076990 -44118442 + RMER19A LTR ERVK 1 318 -419 1 1752 441 281 33 24 chr1 153077118 153077453 -44117979 + MER52-int LTR ERV1 4663 5104 -1987 1 1752 307 206 48 0 chr1 153077876 153077939 -44117493 + RLTR6-int LTR ERV1 4979 5044 -2734 1 1752 3718 342 37 35 chr1 153078275 153080346 -44115086 + RodERV21-int LTR ERV1 2718 4793 -198 1 1752 226 320 53 53 chr1 153080402 153080534 -44114898 + RMER4B LTR ERVK 347 478 -107 1 1752 348 64 0 0 chr1 153080989 153081036 -44114396 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1752 3404 156 164 85 chr1 153081036 153081981 -44113451 + RLTR25B LTR ERVK 9 1028 0 1 1752 271 300 0 0 chr1 153081987 153082057 -44113375 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1752 360 148 0 0 chr1 153082493 153082554 -44112878 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 1 1752 205 346 40 0 chr1 153082560 153082661 -44112771 + L3 LINE CR1 3602 3706 -783 1 1752 276 194 67 40 chr1 153083068 153083143 -44112289 + RSINE1 SINE B4 51 127 -38 1 1752 183 129 0 0 chr1 153083154 153083185 -44112247 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1752 252 0 0 0 chr1 153084259 153084287 -44111145 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 1752 1199 49 0 0 chr1 153084287 153084431 -44111001 - B1_Mm SINE Alu -2 145 2 1 1752 390 271 154 60 chr1 153084461 153084610 -44110822 + RSINE1 SINE B4 2 164 -1 1 1752 2052 184 20 88 chr1 153085799 153086251 -44109181 - MTC LTR MaLR 0 421 1 1 1752 7104 205 85 19 chr1 153087205 153088816 -44106616 - Lx6 LINE L1 -5 7455 5738 1 1752 7023 173 17 10 chr1 153088962 153090282 -44105150 - L1_Mur3 LINE L1 -88 5792 4463 1 1752 550 244 8 8 chr1 153091854 153091978 -44103454 - ID_B1 SINE B4 0 224 101 1 1753 524 244 7 90 chr1 153092825 153092969 -44102463 + RSINE1 SINE B4 2 133 -32 1 1753 195 114 0 0 chr1 153092969 153093004 -44102428 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1753 262 234 0 0 chr1 153093102 153093166 -44102266 - PB1D10 SINE Alu -21 96 33 1 1753 184 231 96 0 chr1 153093814 153093866 -44101566 + MIR SINE MIR 93 149 -113 1 1753 596 250 16 72 chr1 153094038 153094081 -44101351 + B3A SINE B2 1 38 -160 1 1753 1583 37 27 0 chr1 153094081 153094268 -44101164 + B2_Mm1a SINE B2 2 193 0 1 1753 596 250 16 72 chr1 153094268 153094418 -44101014 + B3A SINE B2 39 183 -15 1 1753 2271 70 90 0 chr1 153095372 153095672 -44099760 - ORR1A2 LTR MaLR 0 327 1 1 1753 1151 288 107 27 chr1 153095700 153096111 -44099321 + Lx8 LINE L1 6785 7228 -245 1 1753 227 325 12 35 chr1 153096116 153096202 -44099230 + RMER15 LTR ERVL 371 454 -121 1 1753 604 227 64 0 chr1 153096591 153096732 -44098700 + B1_Mur4 SINE Alu 1 150 0 1 1753 495 240 55 90 chr1 153096820 153097021 -44098411 + B3A SINE B2 1 194 -4 1 1753 323 326 11 0 chr1 153097063 153097158 -44098274 + PB1D10 SINE Alu 1 96 -21 1 1753 252 86 0 0 chr1 153097356 153097391 -44098041 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1753 358 311 30 19 chr1 153097859 153098049 -44097383 + MLT1H LTR MaLR 1 235 -314 1 1753 248 284 55 76 chr1 153098108 153098253 -44097179 + MLT1H LTR MaLR 438 579 -16 1 1753 216 0 0 0 chr1 153098492 153098516 -44096916 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1753 1517 204 114 16 chr1 153098585 153098966 -44096466 - MTD LTR MaLR -12 407 1 1 1753 2368 122 14 6 chr1 153099034 153099396 -44096036 - RLTR8 LTR ERVK 0 365 1 1 1753 2616 225 72 40 chr1 153099525 153100168 -44095264 + Lx7 LINE L1 6720 7382 -314 1 1753 438 220 0 0 chr1 153100186 153100327 -44095105 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 1753 891 174 23 87 chr1 153100347 153100611 -44094821 + Lx7 LINE L1 7449 7695 -1 1 1753 1190 55 7 0 chr1 153100888 153101034 -44094398 - B1_Mm SINE Alu 0 147 1 1 1753 22 0 0 0 chr1 153101091 153101113 -44094319 + AT_rich Low_complexity Low_complexity 1 22 0 1 1753 229 338 26 0 chr1 153101888 153101965 -44093467 + ID4 SINE ID 2 80 -3 1 1753 237 43 42 21 chr1 153102211 153102259 -44093173 + (TTTTTG)n Simple_repeat Simple_repeat 4 52 0 1 1753 1129 88 0 0 chr1 153102261 153102408 -44093024 - B1_Mm SINE Alu 0 147 1 1 1753 1344 91 32 0 chr1 153102974 153103160 -44092272 - B2_Mm1t SINE B2 0 193 2 1 1753 236 269 55 110 chr1 153103343 153103506 -44091926 - ID_B1 SINE B4 -70 154 1 1 1753 320 188 9 129 chr1 153103838 153103954 -44091478 + MT2B LTR ERVL 163 264 -337 1 1753 843 139 7 0 chr1 153103852 153103989 -44091443 + B1_Mur4 SINE Alu 13 150 0 1 1753 213 316 0 25 chr1 153103991 153104072 -44091360 + GA-rich Low_complexity Low_complexity 2 80 0 1 1753 284 0 28 0 chr1 153104828 153104864 -44090568 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1753 638 250 0 27 chr1 153104864 153105012 -44090420 - B1_Mur3 SINE Alu -5 144 1 1 1753 282 250 125 29 chr1 153105901 153106037 -44089395 + B1F1 SINE Alu 1 149 0 1 1753 430 61 0 29 chr1 153106779 153106847 -44088585 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 1 1753 555 325 12 6 chr1 153106848 153107009 -44088423 + ID_B1 SINE B4 51 212 -12 1 1753 225 200 71 71 chr1 153107323 153107393 -44088039 - L1MB7 LINE L1 -64 6120 6051 1 1753 518 179 30 0 chr1 153107448 153107582 -44087850 + CT-rich Low_complexity Low_complexity 1 138 0 1 1753 384 307 113 104 chr1 153107590 153108003 -44087429 + L2a LINE L2 2148 2579 -847 1 1753 338 0 0 0 chr1 153108003 153108044 -44087388 - U2 snRNA snRNA -147 41 1 1 1753 384 307 113 104 chr1 153108044 153108600 -44086832 + L2a LINE L2 2580 3163 -263 1 1753 450 36 0 0 chr1 153108602 153108658 -44086774 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1753 790 238 25 0 chr1 153108658 153108818 -44086614 - B3 SINE B2 -51 165 2 1 1753 245 294 0 0 chr1 153109181 153109232 -44086200 + ID4 SINE ID 5 55 -28 1 1753 255 236 11 43 chr1 153109557 153109650 -44085782 + PB1D10 SINE Alu 28 117 0 1 1753 850 238 47 19 chr1 153109896 153110110 -44085322 - ID_B1 SINE B4 -4 220 1 1 1753 251 292 142 0 chr1 153110278 153110391 -44085041 + MLT1H LTR MaLR 12 140 -409 1 1753 294 87 0 0 chr1 153110393 153110439 -44084993 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1753 2174 175 26 26 chr1 153110952 153111369 -44084063 - MTC LTR MaLR -4 417 1 1 1753 1347 73 39 11 chr1 153111417 153111597 -44083835 - B2_Mm2 SINE B2 -9 186 2 1 1753 707 220 26 7 chr1 153111669 153111820 -44083612 + B3A SINE B2 1 154 -44 1 1753 186 118 0 0 chr1 153111842 153111876 -44083556 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 1 1753 210 37 0 0 chr1 153112675 153112702 -44082730 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1753 353 340 43 0 chr1 153113236 153113377 -44082055 - B1F2 SINE Alu -1 148 2 1 1753 3747 238 91 40 chr1 153113424 153114571 -44080861 + Lx9 LINE L1 6438 7642 -2 1 1753 828 138 64 21 chr1 153114571 153114712 -44080720 + B1_Mus1 SINE Alu 1 147 -1 1 1753 609 14 0 0 chr1 153114712 153114782 -44080650 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1 1753 709 292 0 0 chr1 153114886 153115047 -44080385 + RSINE1 SINE B4 1 161 -4 1 1753 680 193 55 7 chr1 153115129 153115275 -44080157 + RLTR18B LTR ERVK 1 153 -359 1 1753 224 158 0 0 chr1 153115276 153115314 -44080118 - MIR SINE MIR -113 149 112 1 1753 234 0 0 0 chr1 153115717 153115743 -44079689 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1753 1160 62 7 0 chr1 153115780 153115925 -44079507 + B1_Mus2 SINE Alu 2 147 0 1 1753 367 283 33 0 chr1 153116068 153116160 -44079272 + ID_B1 SINE B4 127 221 -3 1 1753 252 143 0 0 chr1 153116321 153116363 -44079069 + (CACG)n Simple_repeat Simple_repeat 2 43 0 1 1753 23 0 0 0 chr1 153116543 153116566 -44078866 + AT_rich Low_complexity Low_complexity 1 23 0 1 1753 230 73 24 0 chr1 153116789 153116830 -44078602 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1753 228 333 16 0 chr1 153116848 153116911 -44078521 + ID4_ SINE ID 5 68 -15 1 1753 354 23 0 0 chr1 153116916 153116959 -44078473 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1753 333 0 0 0 chr1 153117200 153117237 -44078195 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1753 646 228 7 7 chr1 153117616 153117753 -44077679 + B1_Mur2 SINE Alu 1 137 -12 1 1753 204 40 0 0 chr1 153117764 153117789 -44077643 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2 1753 1292 251 49 44 chr1 153117927 153118314 -44077118 + MTD LTR MaLR 19 407 -12 2 1753 189 107 0 0 chr1 153118865 153118893 -44076539 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 2 1753 1877 118 43 89 chr1 153119321 153119692 -44075740 - ORR1B1 LTR MaLR 0 394 41 2 1753 234 136 0 0 chr1 153120464 153120508 -44074924 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1753 343 286 0 62 chr1 153120509 153120621 -44074811 - PB1D10 SINE Alu -10 107 3 2 1753 347 269 0 11 chr1 153120532 153120626 -44074806 - ID_B1 SINE B4 -53 171 79 2 1753 320 364 31 0 chr1 153121381 153121510 -44073922 - MIRb SINE MIR -28 240 108 2 1753 385 318 91 11 chr1 153122303 153122478 -44072954 + Charlie7a DNA MER1_type 4 192 -80 2 1753 1995 282 109 28 chr1 153122637 153123460 -44071972 + Lx9 LINE L1 6330 7375 -269 2 1753 588 121 0 0 chr1 153123536 153123627 -44071805 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1753 3043 80 2 12 chr1 153123670 153124086 -44071346 + L1Md_F2 LINE L1 6170 6581 -1 2 1753 21 0 0 0 chr1 153124194 153124215 -44071217 + AT_rich Low_complexity Low_complexity 1 21 0 2 1753 308 185 10 214 chr1 153125153 153125210 -44070222 + MLT1F1 LTR MaLR 440 491 -78 2 1753 771 237 71 0 chr1 153125210 153125408 -44070024 + B3 SINE B2 1 212 -4 2 1753 308 185 10 214 chr1 153125408 153125453 -44069979 + MLT1F1 LTR MaLR 492 521 -48 2 1753 283 279 50 12 chr1 153126027 153126107 -44069325 + B3A SINE B2 74 156 -42 2 1753 1580 164 63 0 chr1 153126259 153126546 -44068886 + Lx9 LINE L1 7169 7473 -171 2 1753 2386 149 21 8 chr1 153126846 153127225 -44068207 + ORR1C2 LTR MaLR 1 384 0 2 1753 470 240 20 0 chr1 153127879 153127988 -44067444 + B1_Mur1 SINE Alu 10 120 -29 2 1753 44 75 0 0 chr1 153128018 153128111 -44067321 + AT_rich Low_complexity Low_complexity 1 93 0 2 1753 2029 150 71 0 chr1 153128129 153128482 -44066950 + ORR1C1 LTR MaLR 1 378 0 2 1753 474 266 39 31 chr1 153128693 153128821 -44066611 - ID_B1 SINE B4 -14 210 82 2 1753 579 276 7 7 chr1 153128977 153129119 -44066313 - RSINE1 SINE B4 -4 161 20 2 1753 2552 182 44 57 chr1 153129145 153129739 -44065693 + Lx9 LINE L1 7059 7644 0 2 1753 318 67 0 0 chr1 153130157 153130202 -44065230 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1753 184 80 0 0 chr1 153130689 153130714 -44064718 + L2b LINE L2 3331 3355 -20 2 1753 443 107 13 0 chr1 153130968 153131043 -44064389 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1753 306 281 45 0 chr1 153131049 153131138 -44064294 - RSINE1 SINE B4 -18 147 55 2 1753 682 209 48 109 chr1 153131340 153131550 -44063882 + B3A SINE B2 2 198 0 2 1753 456 35 0 0 chr1 153132180 153132238 -44063194 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1753 328 231 42 92 chr1 153132258 153132377 -44063055 + PB1D10 SINE Alu 1 113 -4 2 1753 887 311 78 41 chr1 153132439 153132929 -44062503 + MT2A LTR ERVL 2 509 -24 2 1753 488 220 94 6 chr1 153133042 153133170 -44062262 - ID_B1 SINE B4 -44 248 111 2 1753 261 0 0 0 chr1 153133170 153133199 -44062233 + (CTG)n Simple_repeat Simple_repeat 1 29 0 2 1753 254 333 26 98 chr1 153133898 153134051 -44061381 + RSINE1 SINE B4 14 155 -10 2 1753 27 0 0 0 chr1 153134060 153134087 -44061345 + AT_rich Low_complexity Low_complexity 1 27 0 2 1753 302 67 0 22 chr1 153134199 153134245 -44061187 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1753 779 189 0 0 chr1 153134246 153134378 -44061054 - B1_Mm SINE Alu -7 140 9 2 1753 765 307 57 16 chr1 153135313 153135558 -44059874 + MTE2a LTR MaLR 1 255 -124 2 1753 202 196 0 38 chr1 153136220 153136273 -44059159 + A-rich Low_complexity Low_complexity 4 54 0 2 1753 569 283 90 0 chr1 153136299 153136465 -44058967 + B4A SINE B4 112 292 0 2 1753 1921 133 12 67 chr1 153137052 153137454 -44057978 + RMER10B LTR ERVL 19 398 0 2 1753 507 81 10 20 chr1 153137833 153137934 -44057498 + (TTTTG)n Simple_repeat Simple_repeat 2 101 0 2 1753 1148 75 0 0 chr1 153137935 153138082 -44057350 - B1_Mus2 SINE Alu 0 147 1 2 1753 542 211 15 30 chr1 153138388 153138520 -44056912 - ID_B1 SINE B4 -9 215 86 2 1753 438 254 224 16 chr1 153138705 153138897 -44056535 + Tigger7 DNA MER2_type 1 232 -2259 2 1753 1315 85 11 6 chr1 153138961 153139138 -44056294 + B2_Mm1t SINE B2 1 178 -15 2 1753 380 82 322 91 chr1 153139171 153139292 -44056140 + B2_Mm2 SINE B2 47 195 0 2 1753 663 161 31 24 chr1 153139312 153139439 -44055993 - B3 SINE B2 -87 129 2 2 1753 387 363 23 23 chr1 153139464 153139639 -44055793 + MER5A DNA MER1_type 12 186 -3 2 1753 253 284 91 41 chr1 153139639 153139751 -44055681 + MLT1D LTR MaLR 38 155 -350 2 1753 354 334 82 39 chr1 153139748 153140053 -44055379 + Tigger7 DNA MER2_type 235 552 -1939 2 1753 338 211 12 73 chr1 153140094 153140176 -44055256 + Tigger7 DNA MER2_type 2410 2486 -5 2 1753 722 262 40 33 chr1 153140465 153140741 -44054691 - B4A SINE B4 -10 282 5 2 1753 248 213 16 0 chr1 153141177 153141238 -44054194 + MIRm SINE MIR 84 145 -131 2 1753 3884 82 0 14 chr1 153141695 153142211 -44053221 - L1Md_F2 LINE L1 -1 6581 6073 2 1753 355 311 0 0 chr1 153142336 153142442 -44052990 - MLT1D LTR MaLR -2 503 398 2 1753 342 0 0 0 chr1 153142447 153142485 -44052947 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1753 442 245 2 13 chr1 153142486 153142610 -44052822 - B3A SINE B2 -32 184 66 2 1753 470 83 14 0 chr1 153142611 153142683 -44052749 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 1753 210 136 0 0 chr1 153142981 153143025 -44052407 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 2 1753 463 298 88 0 chr1 153143063 153143234 -44052198 - MER5A DNA MER1_type -2 187 2 2 1753 376 277 0 12 chr1 153143265 153143349 -44052083 + PB1D10 SINE Alu 1 83 -34 2 1753 384 22 0 0 chr1 153143350 153143395 -44052037 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1753 572 279 64 50 chr1 153143804 153144220 -44051212 + RLTR12B LTR ERVK 1 295 -233 2 1753 1241 34 0 0 chr1 153145329 153145476 -44049956 + B1_Mus2 SINE Alu 1 147 0 2 1753 249 33 0 0 chr1 153145476 153145506 -44049926 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1753 1269 20 7 0 chr1 153146158 153146304 -44049128 + B1_Mm SINE Alu 1 147 0 2 1753 249 108 0 0 chr1 153146331 153146368 -44049064 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1753 365 0 22 0 chr1 153146368 153146413 -44049019 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1753 444 265 0 29 chr1 153146455 153146560 -44048872 - RSINE1 SINE B4 -62 103 2 2 1753 189 0 0 0 chr1 153147364 153147385 -44048047 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1753 1129 95 0 0 chr1 153147385 153147532 -44047900 - B1_Mus2 SINE Alu 0 147 1 2 1753 555 172 190 0 chr1 153147676 153147792 -44047640 + URR1A DNA MER1_type 7 144 -82 2 1753 297 51 0 0 chr1 153148078 153148117 -44047315 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 2 1753 332 291 67 10 chr1 153148218 153148322 -44047110 + PB1 SINE Alu 1 110 -17 2 1753 298 252 193 0 chr1 153148714 153148833 -44046599 - ID_B1 SINE B4 -2 222 81 2 1753 306 0 0 0 chr1 153149897 153149931 -44045501 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1753 417 39 0 0 chr1 153149931 153149981 -44045451 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1753 3035 55 31 3 chr1 153150091 153150476 -44044956 - MTA_Mm LTR MaLR 0 396 1 2 1753 240 318 35 0 chr1 153150772 153150857 -44044575 + ID_B1 SINE B4 136 223 -1 2 1753 523 176 27 18 chr1 153150932 153151042 -44044390 + B3 SINE B2 98 208 -8 2 1753 318 26 0 0 chr1 153151211 153151250 -44044182 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1753 456 273 180 0 chr1 153151295 153151423 -44044009 - RSINE1 SINE B4 -11 154 4 2 1753 2195 51 87 0 chr1 153152327 153152638 -44042794 + ORR1A1 LTR MaLR 1 338 -8 2 1753 490 293 7 28 chr1 153152671 153152815 -44042617 + ID_B1 SINE B4 82 222 -2 2 1753 224 77 26 0 chr1 153152824 153152863 -44042569 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1753 298 250 140 65 chr1 153152869 153152976 -44042456 + RSINE1 SINE B4 4 118 -47 2 1753 201 39 0 0 chr1 153152990 153153016 -44042416 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1753 1922 216 36 24 chr1 153153021 153153519 -44041913 + RLTR11A2 LTR ERVK 7 510 -17 2 1753 192 40 0 0 chr1 153153569 153153594 -44041838 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1753 183 42 0 0 chr1 153153597 153153621 -44041811 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1753 1070 95 36 87 chr1 153153644 153153808 -44041624 + B2_Mm2 SINE B2 1 160 -35 2 1753 189 0 0 0 chr1 153153808 153153829 -44041603 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1753 1070 95 36 87 chr1 153153829 153153860 -44041572 + B2_Mm2 SINE B2 161 186 -9 2 1753 326 239 47 117 chr1 153154121 153154249 -44041183 + PB1D7 SINE Alu 1 119 -1 2 1753 626 252 15 10 chr1 153154485 153154647 -44040785 + ID_B1 SINE B4 80 241 -51 2 1753 406 336 68 0 chr1 153154668 153154814 -44040618 + RSINE1 SINE B4 10 165 0 2 1753 243 0 0 0 chr1 153154815 153154842 -44040590 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1753 360 97 0 0 chr1 153154842 153154904 -44040528 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1753 227 291 115 10 chr1 153155273 153155377 -44040055 + PB1D10 SINE Alu 3 117 0 2 1753 615 255 46 126 chr1 153155755 153155993 -44039439 + B4A SINE B4 11 229 -63 2 1753 1600 130 82 31 chr1 153155993 153156286 -44039146 - Lx9 LINE L1 -579 7065 6758 2 1753 2014 207 102 6 chr1 153156284 153156784 -44038648 + Lx9 LINE L1 7080 7627 -17 2 1753 293 327 0 36 chr1 153157292 153157403 -44038029 + G-rich Low_complexity Low_complexity 2 108 0 3 1753 25 0 0 0 chr1 153157546 153157571 -44037861 + AT_rich Low_complexity Low_complexity 1 25 0 3 1753 333 93 40 30 chr1 153157607 153157707 -44037725 + T-rich Low_complexity Low_complexity 3 103 0 3 1753 839 296 43 0 chr1 153157709 153157966 -44037466 + MTEa LTR MaLR 61 328 -51 3 1753 294 279 25 59 chr1 153159290 153159303 -44036129 - PB1D7 SINE Alu -1 119 109 3 1753 225 0 0 0 chr1 153159303 153159328 -44036104 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1753 294 279 25 59 chr1 153159328 153159432 -44036000 - PB1D7 SINE Alu -12 108 6 3 1753 331 298 104 22 chr1 153160120 153160254 -44035178 - RSINE1 SINE B4 -19 146 2 3 1753 798 211 0 0 chr1 153160912 153161087 -44034345 + (CATA)n Simple_repeat Simple_repeat 4 178 0 3 1753 424 276 36 102 chr1 153161129 153161266 -44034166 + B1F SINE Alu 1 128 -21 3 1753 194 345 114 51 chr1 153161364 153161727 -44033705 - L2a LINE L2 -194 3232 2826 3 1753 820 163 28 0 chr1 153162026 153162167 -44033265 - B1_Mur4 SINE Alu -5 145 1 3 1753 446 309 50 7 chr1 153162236 153162376 -44033056 - RSINE1 SINE B4 -17 148 3 3 1753 446 250 10 0 chr1 153162391 153162487 -44032945 - B1F1 SINE Alu -26 123 27 3 1753 861 225 40 10 chr1 153162812 153163014 -44032418 - B3 SINE B2 -8 208 1 3 1753 289 307 112 0 chr1 153163895 153164002 -44031430 - PB1D10 SINE Alu -2 125 1 3 1753 776 194 70 6 chr1 153164074 153164245 -44031187 + B3A SINE B2 1 182 -16 3 1753 202 216 0 26 chr1 153164245 153164321 -44031111 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1753 1556 53 0 0 chr1 153164720 153164907 -44030525 + B2_Mm1t SINE B2 1 187 -6 3 1753 417 250 9 9 chr1 153165040 153165153 -44030279 + B1F SINE Alu 22 134 -15 3 1753 399 73 0 0 chr1 153165157 153165212 -44030220 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1753 266 50 25 0 chr1 153165229 153165269 -44030163 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 1753 295 220 75 32 chr1 153165299 153165393 -44030039 - B1F SINE Alu 0 149 52 3 1753 416 275 54 68 chr1 153165404 153165552 -44029880 - RSINE1 SINE B4 -17 148 3 3 1753 1330 75 12 0 chr1 153165733 153165906 -44029526 + B2_Mm1t SINE B2 1 175 -18 3 1753 420 70 316 9 chr1 153165938 153166052 -44029380 + B2_Mm2 SINE B2 47 195 0 3 1753 384 22 0 0 chr1 153167084 153167129 -44028303 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1753 1070 78 28 0 chr1 153167165 153167307 -44028125 + B1_Mur4 SINE Alu 5 150 0 3 1753 287 18 53 35 chr1 153167307 153167358 -44028074 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1753 263 300 25 0 chr1 153167375 153167455 -44027977 + ID4_ SINE ID 1 82 -1 3 1753 732 244 33 22 chr1 153167996 153168180 -44027252 - B3A SINE B2 -3 195 10 3 1753 236 30 30 0 chr1 153168192 153168225 -44027207 + (CTTG)n Simple_repeat Simple_repeat 1 34 0 3 1753 208 59 0 56 chr1 153168225 153168261 -44027171 + (TTGG)n Simple_repeat Simple_repeat 3 36 0 3 1753 267 188 219 0 chr1 153168261 153168357 -44027075 - PB1D10 SINE Alu 0 117 1 3 1753 569 235 37 0 chr1 153168357 153168432 -44027000 - ID SINE ID -141 83 4 3 1753 963 121 7 0 chr1 153169405 153169554 -44025878 + URR1A DNA MER1_type 77 226 0 3 1753 234 91 0 0 chr1 153169861 153169894 -44025538 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 3 1753 251 309 0 69 chr1 153170138 153170225 -44025207 - PB1D10 SINE Alu -10 107 27 3 1753 1799 100 48 32 chr1 153170337 153170647 -44024785 + ORR1A2 LTR MaLR 11 325 -2 3 1753 357 178 154 11 chr1 153170727 153170818 -44024614 - PB1D10 SINE Alu -5 112 9 3 1753 570 255 38 51 chr1 153170870 153171027 -44024405 + RSINE1 SINE B4 9 163 -2 3 1753 258 135 53 13 chr1 153171173 153171248 -44024184 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 3 1753 564 299 102 70 chr1 153171308 153171497 -44023935 - MER31A LTR ERV1 0 485 278 3 1753 1243 35 0 0 chr1 153171497 153171641 -44023791 + B1_Mus2 SINE Alu 2 145 -2 3 1753 564 299 102 70 chr1 153171641 153171911 -44023521 - MER31A LTR ERV1 -208 277 11 3 1753 22 0 0 0 chr1 153172476 153172498 -44022934 + AT_rich Low_complexity Low_complexity 1 22 0 3 1753 306 0 0 0 chr1 153173108 153173142 -44022290 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1753 6724 15 1 0 chr1 153173986 153174727 -44020705 - RLTR4_Mm LTR ERV1 0 742 1 3 1753 598 269 41 0 chr1 153174957 153175102 -44020330 + RSINE1 SINE B4 2 152 -13 3 1753 703 256 15 25 chr1 153175142 153175338 -44020094 + ID_B1 SINE B4 21 214 -10 3 1753 342 0 0 0 chr1 153175338 153175376 -44020056 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1753 264 30 0 0 chr1 153175484 153175517 -44019915 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 1753 1197 41 0 13 chr1 153175533 153175682 -44019750 - B1_Mus2 SINE Alu 0 147 1 3 1753 390 206 132 38 chr1 153176026 153176132 -44019300 + PB1D9 SINE Alu 5 120 0 3 1753 408 40 0 0 chr1 153176247 153176297 -44019135 + (GGA)n Simple_repeat Simple_repeat 3 52 0 3 1753 432 246 9 5 chr1 153176862 153176983 -44018449 - B3A SINE B2 -25 173 54 3 1753 949 179 147 5 chr1 153176985 153177182 -44018250 - URR1A DNA MER1_type -1 225 1 3 1753 551 275 29 29 chr1 153177209 153177419 -44018013 - RLTR42-int LTR ERVK -4147 1375 1166 3 1753 319 336 39 23 chr1 153177693 153177821 -44017611 - RSINE1 SINE B4 -33 132 3 3 1753 1094 127 146 10 chr1 153178318 153178517 -44016915 + URR1A DNA MER1_type 1 226 0 3 1753 1658 192 39 11 chr1 153178614 153179109 -44016323 + RLTR12A LTR ERVK 9 541 -27 3 1753 927 262 72 18 chr1 153179194 153179470 -44015962 - B4A SINE B4 -1 291 1 3 1753 720 251 97 0 chr1 153179572 153179767 -44015665 - ID_B1 SINE B4 -9 215 2 3 1753 234 0 0 0 chr1 153179963 153179989 -44015443 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1753 183 42 0 0 chr1 153180352 153180376 -44015056 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 3 1753 398 238 0 0 chr1 153180497 153180577 -44014855 - ID4_ SINE ID 0 83 4 3 1753 1999 96 57 0 chr1 153180682 153180983 -44014449 - ORR1A4 LTR MaLR 0 329 12 3 1753 441 282 55 21 chr1 153181218 153181353 -44014079 + Lx8 LINE L1 7219 7360 -113 3 1753 609 14 0 0 chr1 153181353 153181423 -44014009 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1753 1001 109 228 43 chr1 153181444 153181655 -44013777 + MT2B LTR ERVL 11 260 -341 3 1753 476 215 0 27 chr1 153181679 153181789 -44013643 + B1_Mur2 SINE Alu 43 149 0 3 1753 2301 126 73 5 chr1 153181801 153182209 -44013223 + MT2B LTR ERVL 166 601 0 3 1753 791 175 7 14 chr1 153182958 153183097 -44012335 + B1_Mus1 SINE Alu 1 138 -10 3 1753 317 387 0 28 chr1 153183229 153183370 -44012062 + RSINE1 SINE B4 17 153 -12 3 1753 450 152 168 17 chr1 153183394 153183515 -44011917 + ID_B1 SINE B4 81 211 -13 3 1753 1227 27 7 7 chr1 153183619 153183766 -44011666 - B1_Mus2 SINE Alu 0 147 1 3 1753 317 281 50 0 chr1 153183954 153184075 -44011357 - L1MA5 LINE L1 -364 5936 5810 3 1753 317 226 157 19 chr1 153184713 153184821 -44010611 - ID_B1 SINE B4 -16 208 86 3 1753 257 250 147 59 chr1 153186287 153186389 -44009043 + B1F SINE Alu 1 111 -6 3 1753 260 303 0 0 chr1 153186630 153186696 -44008736 - ID_B1 SINE B4 -72 152 87 3 1753 401 239 8 64 chr1 153186892 153187017 -44008415 - PB1D7 SINE Alu 0 120 3 3 1753 261 275 46 56 chr1 153186920 153187028 -44008404 - ID_B1 SINE B4 -49 175 69 3 1753 666 196 7 21 chr1 153187407 153187548 -44007884 + ID_B1 SINE B4 86 224 0 3 1753 354 221 82 21 chr1 153187705 153187802 -44007630 - ID_B1 SINE B4 -3 221 119 3 1753 22 0 0 0 chr1 153188330 153188352 -44007080 + AT_rich Low_complexity Low_complexity 1 22 0 3 1753 414 313 40 7 chr1 153189178 153189329 -44006103 + MLT1C LTR MaLR 38 193 -274 3 1753 342 224 40 10 chr1 153189350 153189437 -44005995 + PB1D10 SINE Alu 15 99 -18 3 1753 246 105 0 0 chr1 153189450 153189488 -44005944 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1753 300 274 107 27 chr1 153189570 153189720 -44005712 + MLT1C LTR MaLR 306 467 0 3 1753 284 286 25 25 chr1 153189901 153189980 -44005452 - ID2 SINE ID -4 79 1 3 1753 216 0 0 0 chr1 153191035 153191059 -44004373 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1753 210 275 11 21 chr1 153191588 153191681 -44003751 + (CGG)n Simple_repeat Simple_repeat 1 92 0 3 1753 198 128 0 0 chr1 153193488 153193527 -44001905 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1753 227 262 49 0 chr1 153194236 153194297 -44001135 + ID4_ SINE ID 12 75 -8 3 1753 393 252 81 40 chr1 153195003 153195127 -44000305 - B1F1 SINE Alu -7 142 14 3 1753 427 257 82 68 chr1 153195358 153195380 -44000052 + B3 SINE B2 43 64 -152 3 1753 1558 53 0 0 chr1 153195380 153195568 -43999864 - B2_Mm1a SINE B2 -5 188 1 3 1753 427 257 82 68 chr1 153195568 153195691 -43999741 + B3 SINE B2 65 190 -26 3 1753 381 233 85 57 chr1 153196772 153196913 -43998519 + RSINE1 SINE B4 2 146 -19 3 1753 252 290 10 41 chr1 153197076 153197173 -43998259 - RSINE1 SINE B4 -70 95 2 3 1753 30 27 0 0 chr1 153197190 153197227 -43998205 + AT_rich Low_complexity Low_complexity 1 37 0 3 1753 401 280 55 83 chr1 153197359 153197577 -43997855 + ID_B1 SINE B4 3 214 -10 3 1753 561 225 21 42 chr1 153197903 153198047 -43997385 - B1_Mus2 SINE Alu -6 141 1 3 1753 929 161 102 25 chr1 153198385 153198582 -43996850 - B3 SINE B2 -1 215 4 3 1753 631 231 72 66 chr1 153199546 153199727 -43995705 - B3A SINE B2 -16 182 1 4 1753 1157 168 51 5 chr1 153199878 153200093 -43995339 - URR1B DNA MER1_type 0 225 1 4 1753 281 248 33 131 chr1 153200132 153200285 -43995147 + B2_Mm2 SINE B2 28 165 -30 4 1753 296 277 125 21 chr1 153200346 153200490 -43994942 + RSINE1 SINE B4 4 162 -3 4 1753 499 202 25 58 chr1 153200788 153200909 -43994523 - PB1D10 SINE Alu 0 117 1 4 1753 225 154 0 0 chr1 153202080 153202119 -43993313 + T-rich Low_complexity Low_complexity 1 39 0 4 1753 329 197 52 13 chr1 153204888 153204965 -43990467 - ID SINE ID -141 83 4 4 1753 349 285 79 79 chr1 153208860 153209024 -43986408 + RSINE1 SINE B4 2 165 0 4 1753 222 299 45 0 chr1 153209652 153209719 -43985713 - ID4_ SINE ID -3 80 11 4 1753 207 244 88 25 chr1 153209794 153209874 -43985558 + MIR SINE MIR 91 175 -87 4 1753 381 348 9 0 chr1 153210008 153210123 -43985309 - PB1D10 SINE Alu 0 117 2 4 1753 21 0 0 0 chr1 153210176 153210197 -43985235 + AT_rich Low_complexity Low_complexity 1 21 0 4 1753 1202 49 0 0 chr1 153211721 153211863 -43983569 + B1_Mus1 SINE Alu 1 142 -6 4 1753 21 0 0 0 chr1 153211872 153211893 -43983539 + AT_rich Low_complexity Low_complexity 1 21 0 4 1753 294 235 31 115 chr1 153212223 153212319 -43983113 + PB1D9 SINE Alu 12 99 -18 4 1753 990 112 112 6 chr1 153212764 153212934 -43982498 - B2_Mm2 SINE B2 -7 188 1 4 1753 833 81 0 0 chr1 153213424 153213548 -43981884 + B2_Mm2 SINE B2 1 124 -71 4 1753 434 293 99 6 chr1 153214142 153214324 -43981108 + B4A SINE B4 26 224 -68 4 1753 343 262 83 0 chr1 153214347 153214475 -43980957 - B4A SINE B4 -113 179 22 4 1753 366 305 62 0 chr1 153214480 153214608 -43980824 + B1F1 SINE Alu 7 142 -7 4 1753 204 40 0 0 chr1 153215493 153215518 -43979914 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1753 378 170 71 41 chr1 153215760 153215858 -43979574 + B1_Mur1 SINE Alu 42 142 -7 4 1753 709 270 0 48 chr1 153215862 153216068 -43979364 - B3A SINE B2 -1 197 2 4 1753 446 235 29 10 chr1 153216071 153216174 -43979258 + RSINE1 SINE B4 54 158 -7 4 1753 204 194 0 0 chr1 153216570 153216606 -43978826 + CT-rich Low_complexity Low_complexity 5 40 0 4 1753 295 233 68 0 chr1 153217031 153217104 -43978328 + Charlie1b DNA MER1_type 399 476 -47 4 1753 464 310 0 9 chr1 153217116 153217230 -43978202 + PB1 SINE Alu 11 123 -4 4 1753 216 67 0 0 chr1 153217232 153217262 -43978170 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1753 349 234 218 11 chr1 153217397 153217588 -43977844 + B4A SINE B4 1 278 -14 4 1753 282 29 0 0 chr1 153217592 153217627 -43977805 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1753 1461 60 0 6 chr1 153218120 153218303 -43977129 + B2_Mm2 SINE B2 5 186 -9 4 1753 258 105 0 0 chr1 153218359 153218397 -43977035 + (CTCA)n Simple_repeat Simple_repeat 2 39 0 4 1753 208 176 28 56 chr1 153218656 153218728 -43976704 + (TATG)n Simple_repeat Simple_repeat 4 73 0 4 1753 220 302 224 60 chr1 153218730 153218864 -43976568 - RSINE1 SINE B4 -1 164 9 4 1753 1508 142 84 22 chr1 153218887 153219195 -43976237 - RMER1B Other Other -224 842 431 4 1753 27 29 0 0 chr1 153219393 153219427 -43976005 + AT_rich Low_complexity Low_complexity 1 34 0 4 1753 21 82 0 0 chr1 153219505 153219554 -43975878 + AT_rich Low_complexity Low_complexity 1 49 0 4 1753 482 103 0 37 chr1 153219612 153219693 -43975739 + URR1B DNA MER1_type 147 224 -1 4 1753 1328 103 5 0 chr1 153219856 153220041 -43975391 - B2_Mm1a SINE B2 -7 186 1 4 1753 222 276 0 49 chr1 153220626 153220687 -43974745 + B4A SINE B4 15 72 -220 4 1753 758 93 58 6 chr1 153220808 153221134 -43974298 + GA-rich Low_complexity Low_complexity 1 343 0 4 1753 828 265 25 62 chr1 153221366 153221640 -43973792 + B4A SINE B4 2 265 -27 4 1753 996 156 0 0 chr1 153221641 153221821 -43973611 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1753 432 295 32 39 chr1 153222052 153222207 -43973225 - RSINE1 SINE B4 -4 161 8 4 1753 833 170 7 7 chr1 153222248 153222396 -43973036 - B1_Mus1 SINE Alu 0 148 1 4 1753 231 281 109 42 chr1 153222451 153222570 -43972862 - RLTR25B LTR ERVK -461 567 441 4 1753 573 128 22 1 chr1 153222498 153222603 -43972829 - PB1D9 SINE Alu -35 113 8 4 1753 340 226 23 35 chr1 153222527 153222614 -43972818 - B4A SINE B4 -123 169 84 4 1753 957 116 0 0 chr1 153222654 153222800 -43972632 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 4 1753 230 136 0 22 chr1 153222800 153222836 -43972596 + polypyrimidine Low_complexity Low_complexity 1 36 0 4 1754 186 43 0 0 chr1 153223220 153223243 -43972189 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1754 1198 34 0 26 chr1 153223243 153223384 -43972048 - B1_Mus1 SINE Alu -8 140 1 4 1754 265 333 0 0 chr1 153223451 153223511 -43971921 + ID4_ SINE ID 2 61 -22 4 1754 234 154 261 0 chr1 153223718 153223783 -43971649 - MT2B2 LTR ERVL -243 341 260 4 1754 264 260 0 20 chr1 153223733 153223784 -43971648 - PB1D9 SINE Alu -69 51 2 4 1754 303 214 28 28 chr1 153223801 153223873 -43971559 - tRNA-Asp-GAY tRNA tRNA -3 72 1 4 1754 458 284 0 8 chr1 153224320 153224437 -43970995 - PB1D10 SINE Alu -1 116 1 4 1754 30 45 0 0 chr1 153224520 153224564 -43970868 + AT_rich Low_complexity Low_complexity 1 44 0 4 1754 180 0 0 0 chr1 153224565 153224585 -43970847 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1754 686 246 92 20 chr1 153224585 153224780 -43970652 - B3 SINE B2 -7 209 1 4 1754 1085 160 42 26 chr1 153224821 153225013 -43970419 + B3 SINE B2 12 206 -10 4 1754 249 344 31 0 chr1 153225066 153225162 -43970270 + PB1D10 SINE Alu 19 117 0 4 1754 758 90 18 0 chr1 153225439 153225550 -43969882 - PB1D9 SINE Alu -1 119 7 4 1754 696 56 6 10 chr1 153225919 153226031 -43969401 - B1_Mm SINE Alu -34 115 1 4 1754 255 350 0 0 chr1 153226098 153226158 -43969274 + ID4_ SINE ID 2 61 -22 4 1754 371 137 134 13 chr1 153226335 153226423 -43969009 + B1F2 SINE Alu 45 144 -5 4 1754 1207 22 0 0 chr1 153226773 153226910 -43968522 + B1_Mus2 SINE Alu 1 137 -10 4 1754 210 37 0 0 chr1 153226910 153226937 -43968495 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1754 231 88 0 0 chr1 153226949 153226983 -43968449 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1754 294 190 35 0 chr1 153227309 153227367 -43968065 + B1_Mus1 SINE Alu 3 62 -86 4 1754 514 231 0 0 chr1 153227771 153227875 -43967557 + B1F2 SINE Alu 2 105 -44 4 1754 948 117 0 0 chr1 153227880 153228025 -43967407 + (GA)n Simple_repeat Simple_repeat 1 145 0 4 1754 237 340 65 9 chr1 153228090 153228197 -43967235 - MIR3 SINE MIR -9 199 87 4 1754 246 261 138 21 chr1 153228209 153228303 -43967129 + B4 SINE B4 65 169 -123 4 1754 460 160 117 29 chr1 153228236 153228339 -43967093 + PB1D9 SINE Alu 9 120 0 4 1754 325 294 45 9 chr1 153228762 153228872 -43966560 - PB1D10 SINE Alu -1 116 3 4 1754 955 238 184 37 chr1 153229033 153229360 -43966072 - MTE2a LTR MaLR 0 379 5 4 1754 465 19 0 0 chr1 153229426 153229480 -43965952 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 4 1754 1156 81 12 0 chr1 153229480 153229641 -43965791 - B2_Mm2 SINE B2 -32 163 1 4 1754 878 61 0 0 chr1 153229669 153229783 -43965649 - B1_Mus1 SINE Alu 0 148 35 4 1754 570 329 13 19 chr1 153230747 153230905 -43964527 + RSINE1 SINE B4 9 165 0 4 1754 291 54 0 0 chr1 153231724 153231761 -43963671 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 1754 1237 34 0 0 chr1 153231761 153231907 -43963525 - B1_Mm SINE Alu 0 147 2 4 1754 486 0 0 0 chr1 153231907 153231961 -43963471 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 4 1754 3131 218 68 9 chr1 153232146 153233265 -43962167 + Lx7 LINE L1 6064 7304 -392 4 1754 28 0 0 0 chr1 153233657 153233685 -43961747 + AT_rich Low_complexity Low_complexity 1 28 0 4 1754 285 224 45 0 chr1 153233729 153233796 -43961636 - tRNA-Ala-GCY_ tRNA tRNA -2 73 4 4 1754 1138 119 50 17 chr1 153234476 153234655 -43960777 + B2_Mm2 SINE B2 2 186 -9 4 1754 573 250 95 187 chr1 153234713 153234857 -43960575 + ID_B1 SINE B4 2 159 -65 4 1754 1142 28 14 20 chr1 153234857 153235004 -43960428 + B1_Mus2 SINE Alu 2 147 0 4 1754 573 250 95 187 chr1 153235004 153235100 -43960332 + ID_B1 SINE B4 160 220 -4 4 1754 668 266 135 5 chr1 153235131 153235316 -43960116 - B3 SINE B2 -7 209 1 4 1754 197 83 0 27 chr1 153235496 153235533 -43959899 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 4 1754 460 283 0 0 chr1 153236521 153236641 -43958791 + PB1D9 SINE Alu 1 120 0 4 1754 742 295 63 47 chr1 153236855 153237108 -43958324 - B4 SINE B4 -34 258 2 4 1754 669 171 214 17 chr1 153237254 153237432 -43958000 + B3 SINE B2 3 215 -1 4 1754 379 235 176 0 chr1 153237501 153237620 -43957812 - B1_Mur1 SINE Alu -8 141 2 4 1754 382 65 210 0 chr1 153237637 153237699 -43957733 + B2_Mm1t SINE B2 1 75 -118 4 1754 310 310 134 90 chr1 153237699 153237860 -43957572 + B4A SINE B4 1 233 -59 4 1754 21 0 0 0 chr1 153238104 153238125 -43957307 + AT_rich Low_complexity Low_complexity 1 21 0 4 1754 446 265 20 0 chr1 153238132 153238230 -43957202 + ID_B1 SINE B4 80 179 -45 4 1754 433 264 57 8 chr1 153238229 153238351 -43957081 - B4 SINE B4 -163 129 2 5 1754 639 257 14 0 chr1 153238376 153238516 -43956916 - ID_B1 SINE B4 -1 223 82 5 1754 763 209 91 23 chr1 153238996 153239172 -43956260 - B3 SINE B2 -14 202 15 5 1754 24 53 0 0 chr1 153239306 153239344 -43956088 + AT_rich Low_complexity Low_complexity 1 38 0 5 1754 8162 47 1 2 chr1 153239646 153240641 -43954791 + L1Md_F2 LINE L1 5589 6582 0 5 1754 796 264 70 0 chr1 153240788 153240989 -43954443 - ID_B1 SINE B4 -8 216 2 5 1754 24 53 0 0 chr1 153241074 153241112 -43954320 + AT_rich Low_complexity Low_complexity 1 38 0 5 1754 1141 49 42 0 chr1 153241207 153241349 -43954083 - B1_Mus1 SINE Alu 0 148 1 5 1754 208 291 0 0 chr1 153241519 153241574 -43953858 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1754 183 232 134 21 chr1 153241753 153241850 -43953582 - L3 LINE CR1 -2263 2226 2119 5 1754 330 303 47 70 chr1 153241976 153242189 -43953243 - ID_B1 SINE B4 -14 210 3 5 1754 333 255 0 0 chr1 153242383 153242489 -43952943 + A-rich Low_complexity Low_complexity 1 106 0 5 1754 537 226 107 24 chr1 153242489 153242657 -43952775 - Lx7 LINE L1 -388 7308 7127 5 1754 1658 16 16 0 chr1 153242921 153243110 -43952322 - B2_Mm1a SINE B2 0 193 2 5 1754 261 0 0 0 chr1 153243212 153243241 -43952191 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 5 1754 242 218 17 52 chr1 153243737 153243795 -43951637 + B1_Mur4 SINE Alu 1 56 -94 5 1754 492 129 0 0 chr1 153243796 153243897 -43951535 + (CAGG)n Simple_repeat Simple_repeat 2 102 0 5 1754 637 133 0 10 chr1 153243898 153243997 -43951435 + B1_Mur4 SINE Alu 42 139 -11 5 1754 1095 59 7 0 chr1 153244070 153244206 -43951226 - B1_Mus2 SINE Alu -9 138 2 5 1754 874 250 9 71 chr1 153244852 153245063 -43950369 - B3A SINE B2 0 198 1 5 1754 257 299 15 0 chr1 153245381 153245448 -43949984 - ID4 SINE ID -15 68 1 5 1754 3480 105 177 27 chr1 153246153 153246180 -43949252 - RLTR13D2 LTR ERVK 0 1023 1002 5 1754 3428 32 135 5 chr1 153246180 153246616 -43948816 + MT2_Mm LTR ERVL 1 493 0 5 1754 3480 132 157 34 chr1 153246616 153247375 -43948057 - RLTR13D2 LTR ERVK -22 1001 1 5 1754 395 267 23 3 chr1 153247375 153247469 -43947963 + B1_Mur2 SINE Alu 12 102 -18 5 1754 666 193 13 40 chr1 153247469 153247620 -43947812 + B1_Mus2 SINE Alu 1 147 0 5 1754 261 276 39 39 chr1 153247620 153247633 -43947799 + PB1D7 SINE Alu 103 118 -2 5 1754 189 262 31 62 chr1 153247715 153247780 -43947652 - MIRb SINE MIR -34 234 172 5 1754 353 283 30 0 chr1 153248359 153248458 -43946974 + B1F SINE Alu 5 106 -43 5 1754 255 152 0 0 chr1 153248580 153248626 -43946806 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1754 374 241 189 126 chr1 153248733 153248874 -43946558 + L1MC1 LINE L1 6026 6189 -144 5 1754 822 211 14 0 chr1 153248874 153249021 -43946411 - B1_Mur3 SINE Alu 0 149 1 5 1754 374 241 189 126 chr1 153249021 153249149 -43946283 + L1MC1 LINE L1 6190 6312 -21 5 1754 213 132 0 0 chr1 153249390 153249428 -43946004 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1754 1219 48 7 0 chr1 153249429 153249576 -43945856 - B1_Mus1 SINE Alu 0 148 1 5 1754 252 337 0 49 chr1 153249639 153249791 -43945641 + GA-rich Low_complexity Low_complexity 1 144 0 5 1754 319 244 158 115 chr1 153250366 153250505 -43944927 + RSINE1 SINE B4 4 148 -17 5 1754 207 220 0 0 chr1 153250530 153250580 -43944852 + (CACG)n Simple_repeat Simple_repeat 1 50 0 5 1754 180 111 0 0 chr1 153251448 153251475 -43943957 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1754 1165 37 0 0 chr1 153251487 153251623 -43943809 - B1_Mus2 SINE Alu -10 137 2 5 1754 186 0 57 29 chr1 153251635 153251670 -43943762 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 5 1754 29 0 0 0 chr1 153252036 153252065 -43943367 + AT_rich Low_complexity Low_complexity 1 29 0 5 1754 554 196 60 86 chr1 153252065 153252216 -43943216 - B1F SINE Alu 0 149 3 5 1754 825 152 0 15 chr1 153252925 153253059 -43942373 - B1_Mus2 SINE Alu -14 133 2 5 1754 555 269 22 0 chr1 153253504 153253638 -43941794 + B1F2 SINE Alu 2 138 -11 5 1754 234 279 84 48 chr1 153254128 153254211 -43941221 - BC1_Mm scRNA scRNA -65 87 2 5 1754 252 0 0 0 chr1 153254284 153254312 -43941120 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1754 834 42 189 25 chr1 153254312 153254427 -43941005 - B1_Mus1 SINE Alu -12 136 1 5 1754 489 268 0 5 chr1 153254515 153254624 -43940808 + PB1D7 SINE Alu 1 109 -11 5 1754 362 292 81 24 chr1 153254527 153254650 -43940782 + ID_B1 SINE B4 94 223 -1 5 1754 450 0 0 0 chr1 153254884 153254934 -43940498 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1754 605 250 0 0 chr1 153254934 153255046 -43940386 - RSINE1 SINE B4 -50 115 4 5 1754 319 224 30 0 chr1 153255056 153255123 -43940309 - MER20 DNA MER1_type -144 75 7 5 1754 1464 186 109 9 chr1 153255516 153255864 -43939568 - ORR1C2 LTR MaLR -1 383 1 5 1754 360 229 13 29 chr1 153255953 153256039 -43939393 - B1F SINE Alu -56 93 12 5 1754 283 272 45 72 chr1 153256039 153256060 -43939372 - ID_B1 SINE B4 -51 169 66 5 1754 512 290 25 49 chr1 153256067 153256230 -43939202 - ID_B1 SINE B4 0 224 66 5 1754 387 293 61 0 chr1 153258704 153258803 -43936629 + B3A SINE B2 2 106 -92 5 1754 1086 65 7 7 chr1 153258858 153258997 -43936435 - B1_Mus2 SINE Alu -8 139 1 5 1754 474 264 46 26 chr1 153259459 153259611 -43935821 + RSINE1 SINE B4 3 157 -8 5 1754 207 122 0 68 chr1 153259611 153259655 -43935777 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1754 347 289 33 11 chr1 153259689 153259780 -43935652 + B1F2 SINE Alu 49 141 -8 5 1754 9254 110 25 14 chr1 153260096 153262176 -43933256 - L1_Mus3 LINE L1 -2 6636 4526 5 1754 753 93 237 0 chr1 153262176 153262294 -43933138 - B1_Mus1 SINE Alu 0 148 3 5 1754 9254 139 43 12 chr1 153262294 153262662 -43932770 - L1_Mus3 LINE L1 -1358 4525 4146 5 1754 904 97 77 6 chr1 153262660 153262816 -43932616 - L1VL2 LINE L1 -1136 2479 2313 5 1754 5288 107 20 3 chr1 153262810 153264294 -43931138 - L1VL2 LINE L1 -2014 1601 91 5 1754 224 379 61 20 chr1 153264300 153264448 -43930984 - MIRb SINE MIR -73 195 42 5 1754 25 0 0 0 chr1 153264685 153264710 -43930722 + AT_rich Low_complexity Low_complexity 1 25 0 5 1754 342 123 102 172 chr1 153264733 153264772 -43930660 + RMER4A LTR ERVK 1 47 -419 5 1754 1406 76 5 0 chr1 153264772 153264957 -43930475 + B2_Mm1t SINE B2 2 187 -6 5 1754 342 123 102 172 chr1 153264957 153265045 -43930387 + RMER4A LTR ERVK 48 119 -347 5 1754 312 269 45 45 chr1 153265073 153265227 -43930205 + RMER4B LTR ERVK 358 556 -29 5 1754 444 309 0 35 chr1 153266199 153266340 -43929092 - B1F SINE Alu -5 144 9 5 1754 824 246 66 0 chr1 153266332 153266499 -43928933 + B4A SINE B4 115 292 0 5 1754 2854 70 16 0 chr1 153266790 153267163 -43928269 + L1_Mus1 LINE L1 6189 6567 0 5 1754 294 372 95 20 chr1 153267678 153267878 -43927554 - L2a LINE L2 -78 3348 3134 5 1754 502 312 7 14 chr1 153267904 153268044 -43927388 + ID_B1 SINE B4 2 140 -84 5 1754 383 376 35 25 chr1 153268082 153268284 -43927148 - L2a LINE L2 -556 2863 2660 5 1754 812 152 14 21 chr1 153268431 153268572 -43926860 + B1_Mur2 SINE Alu 10 149 0 5 1754 568 325 50 8 chr1 153268756 153268995 -43926437 - L2a LINE L2 -1212 2207 1959 5 1754 223 207 52 0 chr1 153269002 153269060 -43926372 + MIR SINE MIR 109 169 -93 5 1754 221 330 97 18 chr1 153269841 153269969 -43925463 + MIRc SINE MIR 71 208 -60 5 1754 304 274 256 8 chr1 153269980 153270105 -43925327 + RSINE1 SINE B4 2 157 -8 5 1754 384 248 184 0 chr1 153270270 153270379 -43925053 + B1F SINE Alu 19 147 -2 5 1754 225 83 0 0 chr1 153270558 153270594 -43924838 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1754 229 88 0 0 chr1 153270913 153270947 -43924485 + PB1D9 SINE Alu 86 119 -1 5 1754 1388 81 5 0 chr1 153271028 153271214 -43924218 - B2_Mm1a SINE B2 -6 187 1 5 1754 292 250 59 59 chr1 153271401 153271486 -43923946 + 7SLRNA srpRNA srpRNA 1 85 -229 5 1754 243 0 0 0 chr1 153271489 153271516 -43923916 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1754 410 179 0 49 chr1 153271541 153271623 -43923809 - MTC LTR MaLR -297 124 47 5 1754 1244 27 7 0 chr1 153271623 153271770 -43923662 + B1_Mus1 SINE Alu 1 148 0 5 1754 293 197 0 32 chr1 153271786 153271849 -43923583 - MTC LTR MaLR -358 61 1 5 1754 3136 198 81 66 chr1 153271978 153272560 -43922872 + RCHARR1 DNA MER1_type 73 658 -316 5 1754 1462 38 0 26 chr1 153272560 153272751 -43922681 + B2_Mm2 SINE B2 2 187 -8 5 1754 3136 198 81 66 chr1 153272751 153272924 -43922508 + RCHARR1 DNA MER1_type 659 838 -136 5 1754 1033 64 14 7 chr1 153272924 153273057 -43922375 + B1_Mus2 SINE Alu 1 135 -12 5 1754 198 0 0 0 chr1 153273057 153273079 -43922353 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 1754 3136 198 81 66 chr1 153273086 153273218 -43922214 + RCHARR1 DNA MER1_type 839 974 0 5 1754 484 151 75 0 chr1 153273332 153273425 -43922007 - MTD LTR MaLR -5 414 315 5 1754 406 309 108 20 chr1 153273431 153273626 -43921806 + MLT1F LTR MaLR 284 495 -53 5 1754 1120 69 0 7 chr1 153273632 153273778 -43921654 + B1_Mus2 SINE Alu 2 146 -1 5 1754 561 303 47 21 chr1 153274144 153274336 -43921096 - B3A SINE B2 0 198 2 5 1754 198 222 0 0 chr1 153276153 153276207 -43919225 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 5 1754 352 250 65 122 chr1 153277348 153277463 -43917969 + PB1D10 SINE Alu 5 109 -8 5 1754 185 81 0 98 chr1 153277766 153277788 -43917644 + A-rich Low_complexity Low_complexity 1 19 0 5 1754 1290 48 0 0 chr1 153277788 153277934 -43917498 + B1_Mus2 SINE Alu 2 147 0 5 1754 185 81 0 98 chr1 153277934 153277952 -43917480 + A-rich Low_complexity Low_complexity 20 37 0 5 1754 585 244 55 0 chr1 153278354 153278481 -43916951 + B1F SINE Alu 15 148 -1 5 1754 205 184 0 58 chr1 153278734 153278750 -43916682 + A-rich Low_complexity Low_complexity 4 19 0 5 1754 1219 69 0 0 chr1 153278750 153278895 -43916537 + B1_Mus2 SINE Alu 1 145 -2 5 1754 205 184 0 58 chr1 153278895 153278930 -43916502 + A-rich Low_complexity Low_complexity 20 52 0 5 1754 775 135 110 22 chr1 153279317 153279453 -43915979 + B1_Mus1 SINE Alu 1 148 0 6 1754 216 0 0 0 chr1 153279596 153279620 -43915812 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 6 1754 570 302 42 5 chr1 153280444 153280660 -43914772 - ID_B1 SINE B4 0 224 1 6 1754 365 102 0 0 chr1 153281048 153281097 -43914335 + HAL1-3A_ME LINE L1 1970 2018 -840 6 1754 205 311 0 0 chr1 153281105 153281166 -43914266 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1754 1065 191 80 0 chr1 153281449 153281648 -43913784 + B3 SINE B2 1 215 -1 6 1754 180 72 22 67 chr1 153281744 153281789 -43913643 + CT-rich Low_complexity Low_complexity 3 45 0 6 1754 266 232 114 14 chr1 153282150 153282220 -43913212 - RSINE1 SINE B4 -85 80 4 6 1754 471 39 324 81 chr1 153283489 153283600 -43911832 - B2_Mm2 SINE B2 -7 188 51 6 1754 1330 108 23 0 chr1 153283631 153283807 -43911625 - B2_Mm2 SINE B2 -14 181 2 6 1754 1445 162 302 0 chr1 153284203 153284524 -43910908 - MTD LTR MaLR -1 418 1 6 1754 367 340 96 65 chr1 153285001 153285461 -43909971 - L2 LINE L2 -778 2641 2168 6 1754 212 268 0 35 chr1 153285755 153285813 -43909619 - ID_B1 SINE B4 -89 135 80 6 1754 1127 71 35 0 chr1 153285865 153286006 -43909426 + B1_Mus2 SINE Alu 2 147 0 6 1754 29 0 0 0 chr1 153286006 153286035 -43909397 + AT_rich Low_complexity Low_complexity 1 29 0 6 1754 963 167 0 27 chr1 153286393 153286541 -43908891 - B1_Mur1 SINE Alu -1 148 5 6 1754 826 253 46 5 chr1 153286861 153287056 -43908376 - ID_B1 SINE B4 -21 203 1 6 1754 1003 213 51 0 chr1 153287160 153287357 -43908075 - B3 SINE B2 -8 208 2 6 1754 846 124 58 14 chr1 153288141 153288208 -43907224 + B1_Mm SINE Alu 2 70 -77 6 1754 1265 48 147 18 chr1 153288208 153288378 -43907054 - B2_Mm2 SINE B2 -1 194 3 6 1754 846 124 58 14 chr1 153288378 153288449 -43906983 + B1_Mm SINE Alu 71 146 -1 6 1754 186 43 0 0 chr1 153288583 153288606 -43906826 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1754 986 69 0 0 chr1 153288618 153288748 -43906684 - B1_Mus2 SINE Alu 0 147 18 6 1754 2515 104 24 38 chr1 153288994 153289364 -43906068 + RLTR8 LTR ERVK 1 365 0 6 1754 1266 54 0 20 chr1 153289932 153290083 -43905349 + B1_Mus1 SINE Alu 1 148 0 6 1754 619 195 49 67 chr1 153290488 153290656 -43904776 - B3 SINE B2 -22 173 9 6 1754 915 159 28 0 chr1 153290705 153290850 -43904582 + B1_Mur2 SINE Alu 1 149 0 6 1754 233 28 0 77 chr1 153290850 153290889 -43904543 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1754 22 0 0 0 chr1 153290901 153290923 -43904509 + AT_rich Low_complexity Low_complexity 1 22 0 6 1754 333 0 0 0 chr1 153291266 153291303 -43904129 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1754 772 157 62 28 chr1 153291507 153291651 -43903781 - B1_Mur1 SINE Alu 0 149 1 6 1754 186 43 0 0 chr1 153291714 153291737 -43903695 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1754 584 256 0 8 chr1 153291885 153292007 -43903425 - ID_B1 SINE B4 -21 203 83 6 1754 572 202 82 9 chr1 153292050 153292160 -43903272 - PB1D9 SINE Alu -1 119 2 6 1754 392 311 24 8 chr1 153292282 153292405 -43903027 - RSINE1 SINE B4 -39 126 2 6 1754 358 207 22 141 chr1 153292444 153292579 -43902853 - B1F SINE Alu 0 149 31 6 1754 215 299 0 29 chr1 153292736 153292805 -43902627 + B2_Mm2 SINE B2 21 87 -108 6 1754 1063 272 52 35 chr1 153293192 153293478 -43901954 - B4A SINE B4 0 292 2 6 1754 450 127 0 0 chr1 153293534 153293605 -43901827 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1754 723 176 87 14 chr1 153293609 153293747 -43901685 - B1_Mur1 SINE Alu 0 149 2 6 1754 230 253 113 21 chr1 153294543 153294640 -43900792 - RSINE1 SINE B4 -6 159 54 6 1754 582 165 146 0 chr1 153294726 153294829 -43900603 + B1_Mur3 SINE Alu 1 118 -31 6 1754 722 69 10 0 chr1 153294881 153294982 -43900450 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 6 1754 211 200 0 0 chr1 153294983 153295023 -43900409 + PB1D10 SINE Alu 70 109 -8 6 1754 471 164 0 0 chr1 153295166 153295294 -43900138 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 1754 1220 113 79 0 chr1 153295698 153295875 -43899557 + B2_Mm1t SINE B2 1 191 -2 6 1754 3324 37 42 0 chr1 153296012 153296392 -43899040 - MTA_Mm LTR MaLR 0 396 1 6 1754 1102 135 11 31 chr1 153296402 153296593 -43898839 - B2_Mm2 SINE B2 -7 188 2 6 1754 479 213 27 27 chr1 153296661 153296772 -43898660 - PB1D10 SINE Alu -6 111 1 6 1754 1212 62 0 0 chr1 153296799 153296943 -43898489 - B1_Mus2 SINE Alu 0 147 4 6 1754 596 289 20 0 chr1 153297436 153297585 -43897847 - RSINE1 SINE B4 -10 155 4 6 1754 1304 41 0 0 chr1 153297909 153298056 -43897376 + B1_Mm SINE Alu 1 147 0 6 1754 234 91 0 0 chr1 153298056 153298089 -43897343 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1754 692 202 151 47 chr1 153298092 153298284 -43897148 - B3 SINE B2 -4 212 1 6 1754 3161 39 3 0 chr1 153298795 153299156 -43896276 - L1_Mus1 LINE L1 0 6567 6206 6 1754 1159 95 78 0 chr1 153299706 153299885 -43895547 - B2_Mm2 SINE B2 -1 194 2 6 1754 291 230 0 86 chr1 153299890 153299971 -43895461 + MIRb SINE MIR 183 256 -12 6 1754 1172 75 0 7 chr1 153299976 153300123 -43895309 - B1_Mus1 SINE Alu 0 148 3 6 1754 1571 64 5 5 chr1 153300395 153300584 -43894848 - B2_Mm2 SINE B2 -5 190 2 6 1754 1727 42 0 0 chr1 153300783 153300974 -43894458 + B2_Mm1t SINE B2 2 192 -1 6 1754 288 0 0 0 chr1 153301286 153301318 -43894114 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1754 396 225 45 0 chr1 153301318 153301421 -43894011 - PB1D10 SINE Alu 0 120 4 6 1754 395 257 86 0 chr1 153301712 153301817 -43893615 - PB1D9 SINE Alu -5 115 2 6 1754 421 250 235 0 chr1 153301851 153301983 -43893449 - RSINE1 SINE B4 0 165 3 6 1754 1075 120 7 0 chr1 153302347 153302489 -43892943 + B1_Mur4 SINE Alu 2 144 -6 6 1754 531 221 0 0 chr1 153302504 153302626 -43892806 + (CA)n Simple_repeat Simple_repeat 1 122 0 6 1754 1299 102 22 33 chr1 153302917 153303099 -43892333 - B2_Mm2 SINE B2 -14 181 2 6 1754 410 281 31 92 chr1 153303980 153304176 -43891256 - B3A SINE B2 -3 192 9 6 1754 21 0 0 0 chr1 153305156 153305177 -43890255 + AT_rich Low_complexity Low_complexity 1 21 0 6 1754 29 47 0 0 chr1 153305235 153305278 -43890154 + AT_rich Low_complexity Low_complexity 1 43 0 6 1754 787 232 105 0 chr1 153305869 153306059 -43889373 + B3 SINE B2 2 211 -5 6 1754 914 159 21 0 chr1 153306564 153306709 -43888723 + B1_Mur4 SINE Alu 1 148 -2 6 1754 493 120 27 0 chr1 153306938 153307013 -43888419 - B1_Mur1 SINE Alu 0 149 73 6 1754 240 149 0 0 chr1 153307253 153307300 -43888132 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1754 1206 57 0 0 chr1 153307314 153307454 -43887978 - B1_Mus1 SINE Alu -8 140 1 6 1754 1005 110 86 0 chr1 153307589 153307752 -43887680 + B2_Mm2 SINE B2 3 179 -16 6 1754 990 62 0 0 chr1 153307764 153307892 -43887540 - B1_Mus1 SINE Alu -20 128 1 6 1754 513 235 26 39 chr1 153307892 153307922 -43887510 - ID SINE ID -146 78 51 6 1754 763 104 135 8 chr1 153308100 153308226 -43887206 - B1_Mur4 SINE Alu -8 142 1 6 1754 437 264 35 58 chr1 153308246 153308419 -43887013 - L1MA8 LINE L1 -287 6004 5836 6 1754 449 224 4 29 chr1 153308530 153308646 -43886786 + ORR1D2 LTR MaLR 10 114 -245 6 1754 21 0 0 0 chr1 153308744 153308765 -43886667 + AT_rich Low_complexity Low_complexity 1 21 0 6 1754 6529 38 5 8 chr1 153308847 153309594 -43885838 - L1Md_T LINE L1 0 6582 5838 6 1754 230 263 172 66 chr1 153309606 153309728 -43885704 + ORR1D2 LTR MaLR 231 365 -9 6 1754 1217 96 35 60 chr1 153309903 153310102 -43885330 - B2_Mm2 SINE B2 0 195 2 6 1754 980 165 55 25 chr1 153310102 153310301 -43885131 - URR1A DNA MER1_type -21 205 1 6 1754 1378 174 67 117 chr1 153310301 153310498 -43884934 + RLTR40 LTR ERVK 153 334 -483 6 1754 629 224 230 0 chr1 153310498 153310672 -43884760 - B3 SINE B2 -1 215 2 6 1754 1378 174 67 117 chr1 153310672 153310713 -43884719 + RLTR40 LTR ERVK 335 363 -454 6 1754 1086 245 5 5 chr1 153310713 153310922 -43884510 - B3 SINE B2 -7 209 1 6 1754 1378 174 67 117 chr1 153310922 153311114 -43884318 + RLTR40 LTR ERVK 364 562 -255 6 1754 1211 75 7 0 chr1 153311142 153311289 -43884143 - B1_Mus1 SINE Alu 0 148 1 6 1754 923 109 16 9 chr1 153311296 153311480 -43883952 - B2_Mm2 SINE B2 -8 185 1 6 1754 350 226 391 0 chr1 153311481 153311614 -43883818 + RLTR40 LTR ERVK 548 732 -85 6 1754 1020 78 28 0 chr1 153311615 153311757 -43883675 + B2_Mm2 SINE B2 3 148 -47 6 1754 526 73 0 0 chr1 153311794 153311862 -43883570 + B1_Mus2 SINE Alu 2 69 -78 6 1754 1281 182 182 0 chr1 153311881 153312172 -43883260 + ORR1C2 LTR MaLR 11 354 -30 6 1754 1972 190 42 5 chr1 153312172 153312574 -43882858 + RMER20A LTR ERVK 1 417 -99 6 1754 1431 46 58 0 chr1 153312695 153312869 -43882563 - B2_Mm2 SINE B2 -10 185 2 6 1754 748 154 18 0 chr1 153313444 153313554 -43881878 - PB1D9 SINE Alu -8 112 1 6 1754 1571 224 114 94 chr1 153313700 153313871 -43881561 + RLTR19 LTR ERVK 1 205 -294 6 1754 2632 47 85 0 chr1 153313871 153314190 -43881242 + ORR1A1 LTR MaLR 1 346 0 6 1754 1571 224 114 94 chr1 153314190 153314507 -43880925 + RLTR19 LTR ERVK 206 499 0 6 1754 451 242 99 11 chr1 153314507 153314632 -43880800 - B1_Mur1 SINE Alu -8 141 6 6 1754 313 288 151 48 chr1 153314672 153314818 -43880614 - B3A SINE B2 -35 163 3 6 1754 479 245 0 0 chr1 153315044 153315142 -43880290 + ID_B1 SINE B4 118 215 -9 6 1754 234 188 0 0 chr1 153315192 153315240 -43880192 - L1M4 LINE L1 -5589 953 906 7 1754 627 279 63 50 chr1 153315660 153315867 -43879565 + MTD LTR MaLR 2 208 -211 7 1754 934 159 22 0 chr1 153315867 153316005 -43879427 + B1_Mur2 SINE Alu 1 141 -8 7 1754 358 336 34 82 chr1 153316005 153316047 -43879385 + MTD LTR MaLR 194 238 -169 7 1754 224 304 0 0 chr1 153316232 153316288 -43879144 + PB1D7 SINE Alu 5 60 -60 7 1754 459 0 0 0 chr1 153316434 153316485 -43878947 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1754 509 152 94 43 chr1 153318012 153318129 -43877303 + B1F2 SINE Alu 27 149 0 7 1754 198 111 0 0 chr1 153319231 153319258 -43876174 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1754 1765 21 5 0 chr1 153319258 153319450 -43875982 + B2_Mm1t SINE B2 1 193 0 7 1754 198 111 0 0 chr1 153319450 153319458 -43875974 + (A)n Simple_repeat Simple_repeat 1 8 0 7 1754 1302 27 0 7 chr1 153319494 153319642 -43875790 + B1_Mus2 SINE Alu 1 147 0 7 1754 727 148 148 0 chr1 153319669 153319791 -43875641 + B1_Mus2 SINE Alu 1 140 -7 7 1754 237 65 0 0 chr1 153320026 153320057 -43875375 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 7 1754 1162 185 70 5 chr1 153320553 153320754 -43874678 - B3 SINE B2 -1 215 2 7 1754 450 217 122 25 chr1 153320821 153320950 -43874482 + B1_Mur3 SINE Alu 13 142 -7 7 1754 545 313 15 0 chr1 153321484 153321618 -43873814 + B1F1 SINE Alu 3 138 -11 7 1754 1278 68 0 0 chr1 153321686 153321834 -43873598 + B1_Mus1 SINE Alu 1 148 0 7 1754 216 0 0 0 chr1 153322073 153322097 -43873335 + (CTAAG)n Simple_repeat Simple_repeat 3 26 0 7 1754 485 295 66 0 chr1 153322136 153322258 -43873174 + RSINE1 SINE B4 4 133 -32 7 1754 397 280 38 53 chr1 153323707 153323839 -43871593 + B1F SINE Alu 15 144 -5 7 1754 23 0 0 0 chr1 153324528 153324551 -43870881 + AT_rich Low_complexity Low_complexity 1 23 0 7 1754 364 165 0 124 chr1 153324631 153324728 -43870704 + MTD LTR MaLR 321 405 -14 7 1754 406 223 53 18 chr1 153324741 153324855 -43870577 + ID_B1 SINE B4 99 216 -8 7 1754 232 304 29 14 chr1 153325919 153325989 -43869443 + LTR48B LTR ERV1 135 205 -439 7 1754 281 47 0 23 chr1 153325997 153326041 -43869391 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1754 1147 58 0 0 chr1 153326041 153326178 -43869254 - B1_Mus2 SINE Alu -10 137 1 7 1754 33 25 0 0 chr1 153326179 153326219 -43869213 + AT_rich Low_complexity Low_complexity 1 40 0 7 1754 232 242 333 0 chr1 153326225 153326357 -43869075 + LTR48B LTR ERV1 466 641 -146 7 1754 397 281 189 16 chr1 153327000 153327305 -43868127 + L1M3de LINE L1 1483 1877 -4776 7 1754 235 274 136 10 chr1 153327471 153327574 -43867858 + ORR1E LTR MaLR 232 347 -12 7 1754 764 295 127 44 chr1 153327584 153328017 -43867415 + ORR1E-int LTR MaLR 3 471 -1109 7 1754 360 287 119 0 chr1 153328120 153328221 -43867211 + RSINE1 SINE B4 3 115 -50 7 1754 402 151 102 175 chr1 153328300 153328437 -43866995 + B1F2 SINE Alu 5 131 -18 7 1754 232 67 89 0 chr1 153328442 153328487 -43866945 + GA-rich Low_complexity Low_complexity 2 50 0 7 1754 936 154 18 12 chr1 153328802 153328966 -43866466 + URR1B DNA MER1_type 1 165 -60 7 1754 629 98 128 0 chr1 153328966 153329068 -43866364 + ORR1A2 LTR MaLR 1 115 -212 7 1754 1470 90 24 5 chr1 153329056 153329268 -43866164 + ORR1A2-int LTR MaLR 1746 1961 -2 7 1754 1882 115 6 75 chr1 153329268 153329522 -43865910 + ORR1A2 LTR MaLR 36 284 -43 7 1754 1243 56 0 0 chr1 153329522 153329666 -43865766 + B1_Mus1 SINE Alu 4 147 -1 7 1754 1882 115 6 75 chr1 153329666 153329717 -43865715 + ORR1A2 LTR MaLR 285 319 -8 7 1754 446 94 16 0 chr1 153329721 153329785 -43865647 + URR1B DNA MER1_type 161 225 0 7 1754 745 339 80 37 chr1 153329836 153330299 -43865133 + ORR1E-int LTR MaLR 855 1337 -243 7 1754 299 291 66 66 chr1 153330323 153330459 -43864973 - MTE2b LTR MaLR -15 364 229 7 1754 231 358 69 161 chr1 153330717 153330865 -43864567 + ORR1E LTR MaLR 63 224 -135 7 1754 734 184 34 34 chr1 153330865 153331011 -43864421 + B1_Mur2 SINE Alu 2 147 -2 7 1754 231 358 69 161 chr1 153331011 153331122 -43864310 + ORR1E LTR MaLR 225 298 -61 7 1754 576 196 0 35 chr1 153331190 153331306 -43864126 + PB1D9 SINE Alu 9 120 0 7 1754 1134 96 6 6 chr1 153331309 153331476 -43863956 + LTRIS2 LTR ERV1 398 564 0 7 1754 42 0 0 0 chr1 153331713 153331755 -43863677 + AT_rich Low_complexity Low_complexity 1 42 0 7 1754 1183 75 0 0 chr1 153332540 153332687 -43862745 + B1_Mus1 SINE Alu 2 148 0 7 1754 1665 22 27 0 chr1 153332987 153333174 -43862258 - B2_Mm1a SINE B2 0 193 2 7 1754 227 229 4 35 chr1 153333287 153333369 -43862063 + PB1D10 SINE Alu 33 113 -35 7 1754 1312 124 61 23 chr1 153333538 153333752 -43861680 + URR1B DNA MER1_type 1 222 -3 7 1754 1128 74 141 0 chr1 153333868 153334031 -43861401 - B2_Mm2 SINE B2 -8 187 2 7 1754 192 274 110 0 chr1 153334587 153334660 -43860772 + MIRb SINE MIR 147 227 -41 7 1754 32 26 0 0 chr1 153334793 153334832 -43860600 + AT_rich Low_complexity Low_complexity 1 39 0 7 1754 341 325 93 16 chr1 153334874 153335068 -43860364 + ID_B1 SINE B4 2 210 -14 7 1754 430 313 54 0 chr1 153336270 153336417 -43859015 - MLT1D LTR MaLR -350 155 1 7 1754 992 102 157 0 chr1 153336679 153336845 -43858587 + B2_Mm1t SINE B2 1 192 -1 7 1754 755 113 199 0 chr1 153337631 153337772 -43857660 - B2_Mm1t SINE B2 -23 170 2 7 1754 288 212 11 101 chr1 153338759 153338771 -43856661 + MT2B LTR ERVL 152 155 -446 7 1754 548 68 30 23 chr1 153338771 153338881 -43856551 + B1_Mus1 SINE Alu 1 116 -4 7 1754 300 288 114 57 chr1 153338896 153339024 -43856408 + B1F2 SINE Alu 1 140 -9 7 1754 687 140 98 23 chr1 153339024 153339156 -43856276 + B1_Mur1 SINE Alu 1 142 -7 7 1754 300 288 114 57 chr1 153339156 153339167 -43856265 + B1F2 SINE Alu 141 148 -1 7 1754 448 251 91 2 chr1 153339257 153339418 -43856014 + B3A SINE B2 34 206 -10 7 1754 347 176 113 85 chr1 153339453 153339641 -43855791 + L1M3 LINE L1 5235 5434 -737 7 1754 336 308 17 8 chr1 153340068 153340186 -43855246 + ID_B1 SINE B4 75 193 -31 7 1754 294 271 71 0 chr1 153340626 153340711 -43854721 + ID_B1 SINE B4 1 91 -133 7 1754 588 252 158 62 chr1 153340872 153341278 -43854154 + RLTR12B LTR ERVK 39 483 -45 7 1754 616 173 18 0 chr1 153341314 153341424 -43854008 + B1_Mus1 SINE Alu 18 129 -19 7 1754 1163 20 0 93 chr1 153342712 153342874 -43852558 + B1_Mus2 SINE Alu 1 147 0 7 1754 843 180 173 39 chr1 153342937 153343168 -43852264 + RMER1C Other Other 1078 1339 -3 7 1754 504 165 95 41 chr1 153344163 153344287 -43851145 - B2_Mm2 SINE B2 -63 153 15 7 1754 427 232 26 35 chr1 153344316 153344432 -43851000 - B3 SINE B2 -43 173 59 7 1754 511 211 0 37 chr1 153344860 153344968 -43850464 + PB1D9 SINE Alu 5 108 -12 7 1754 225 0 0 0 chr1 153344968 153344993 -43850439 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 1754 421 189 55 11 chr1 153345612 153345703 -43849729 - B1_Mus2 SINE Alu -52 95 1 7 1754 275 228 17 165 chr1 153346509 153346638 -43848794 + PB1 SINE Alu 9 119 -1 7 1754 24 0 0 0 chr1 153346685 153346709 -43848723 + AT_rich Low_complexity Low_complexity 1 24 0 7 1754 189 0 0 0 chr1 153347114 153347135 -43848297 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1754 21 82 0 0 chr1 153347650 153347699 -43847733 + GC_rich Low_complexity Low_complexity 1 49 0 7 1754 180 0 0 0 chr1 153347727 153347747 -43847685 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1754 221 281 17 42 chr1 153347747 153347866 -43847566 + C-rich Low_complexity Low_complexity 4 119 0 7 1754 243 0 0 0 chr1 153348047 153348074 -43847358 + (CGAG)n Simple_repeat Simple_repeat 2 28 0 7 1754 618 249 151 35 chr1 153348899 153349375 -43846057 - MT2A LTR ERVL 0 533 1 7 1754 976 128 0 13 chr1 153349833 153349983 -43845449 + B1_Mur4 SINE Alu 3 150 0 7 1754 1123 230 69 54 chr1 153350188 153350651 -43844781 - MT2B LTR ERVL 0 601 4 7 1754 216 0 0 0 chr1 153350857 153350881 -43844551 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1754 1162 68 0 0 chr1 153350921 153351067 -43844365 - B1_Mus1 SINE Alu 0 148 3 7 1754 319 149 59 15 chr1 153351171 153351239 -43844193 - RLTR19A LTR ERVK 0 496 426 7 1754 1108 75 7 7 chr1 153351239 153351386 -43844046 + B1_Mus1 SINE Alu 1 147 -1 7 1754 318 103 52 0 chr1 153351406 153351464 -43843968 - RLTR19A LTR ERVK -445 61 1 7 1754 257 212 117 39 chr1 153351661 153351764 -43843668 - PB1D7 SINE Alu 0 120 10 7 1754 426 273 20 29 chr1 153351785 153351796 -43843636 - PB1D10 SINE Alu 0 117 109 7 1754 180 0 0 0 chr1 153351796 153351816 -43843616 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1754 426 273 20 29 chr1 153351816 153351906 -43843526 - PB1D10 SINE Alu -9 108 17 7 1754 310 202 238 0 chr1 153351964 153352048 -43843384 + PB1D10 SINE Alu 13 116 -1 7 1754 668 249 92 36 chr1 153352073 153352269 -43843163 + ID_B1 SINE B4 2 208 -16 7 1754 23 68 0 0 chr1 153352377 153352421 -43843011 + AT_rich Low_complexity Low_complexity 1 44 0 7 1754 251 243 57 0 chr1 153352642 153352712 -43842720 + MIRm SINE MIR 203 276 0 7 1754 572 235 8 8 chr1 153353022 153353155 -43842277 - B1F SINE Alu -16 133 1 7 1754 186 325 39 0 chr1 153353191 153353268 -43842164 - MIRc SINE MIR -155 113 34 7 1754 1529 196 85 18 chr1 153353288 153353319 -43842113 - MT2A LTR ERVL -25 508 478 7 1754 399 41 0 0 chr1 153353319 153353368 -43842064 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1754 1529 196 85 18 chr1 153353368 153353725 -43841707 - MT2A LTR ERVL -56 477 94 7 1754 1416 76 16 0 chr1 153353728 153353913 -43841519 - B2_Mm1a SINE B2 -5 188 1 7 1754 514 151 181 26 chr1 153353938 153354054 -43841378 + B1_Mus1 SINE Alu 7 140 -8 7 1754 459 181 0 0 chr1 153354075 153354158 -43841274 - MT2A LTR ERVL -448 85 3 7 1755 244 220 20 0 chr1 153354275 153354344 -43841088 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1755 393 182 13 0 chr1 153354381 153354458 -43840974 - B4A SINE B4 -18 274 197 7 1755 794 229 109 45 chr1 153354457 153354704 -43840728 - B4A SINE B4 -25 267 5 7 1755 618 301 0 0 chr1 153354724 153354880 -43840552 + RSINE1 SINE B4 6 161 -4 7 1755 200 34 0 33 chr1 153354886 153354916 -43840516 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 7 1755 566 231 22 0 chr1 153355566 153355700 -43839732 + B1F2 SINE Alu 13 149 0 8 1755 226 246 17 17 chr1 153355786 153355844 -43839588 + CT-rich Low_complexity Low_complexity 1 58 0 8 1755 539 184 130 46 chr1 153355844 153355975 -43839457 - B1_Mur4 SINE Alu -6 144 3 8 1755 356 108 0 44 chr1 153355977 153356006 -43839426 + T-rich Low_complexity Low_complexity 37 65 0 8 1755 541 203 39 83 chr1 153356006 153356162 -43839270 - B1_Mur3 SINE Alu 0 149 1 8 1755 356 108 0 44 chr1 153356162 153356200 -43839232 + T-rich Low_complexity Low_complexity 1 36 0 8 1755 1275 27 0 0 chr1 153356203 153356350 -43839082 - B1_Mm SINE Alu 0 147 1 8 1755 252 86 0 0 chr1 153356682 153356717 -43838715 + (GGA)n Simple_repeat Simple_repeat 3 37 0 8 1755 411 113 0 0 chr1 153356715 153356777 -43838655 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 8 1755 847 182 7 0 chr1 153356897 153357045 -43838387 + B1_Mur2 SINE Alu 1 149 0 8 1755 544 239 6 17 chr1 153357345 153357524 -43837908 + GA-rich Low_complexity Low_complexity 4 180 0 8 1755 741 159 16 8 chr1 153357531 153357658 -43837774 + B1_Mur4 SINE Alu 3 130 -20 8 1755 357 86 0 0 chr1 153357891 153357949 -43837483 + (T)n Simple_repeat Simple_repeat 1 58 0 8 1755 571 161 62 0 chr1 153357974 153358086 -43837346 + B1_Mur2 SINE Alu 1 119 -30 8 1755 261 136 65 48 chr1 153358115 153358177 -43837255 - RMER15 LTR ERVL -486 89 27 8 1755 266 179 88 25 chr1 153358565 153358645 -43836787 - Lx8 LINE L1 -4 7469 7385 8 1755 205 330 9 35 chr1 153358868 153358984 -43836448 + CT-rich Low_complexity Low_complexity 3 115 0 8 1755 258 267 93 0 chr1 153359036 153359122 -43836310 + RMER10A LTR ERVL 318 411 -31 8 1755 952 257 102 40 chr1 153359139 153359558 -43835874 - Lx8 LINE L1 -77 7396 6968 8 1755 1060 183 10 168 chr1 153359593 153359826 -43835606 + RMER16 LTR ERVK 1 335 -198 8 1755 1173 55 7 0 chr1 153359826 153359972 -43835460 - B1_Mus1 SINE Alu 0 148 2 8 1755 1060 188 15 199 chr1 153359972 153360184 -43835248 + RMER16 LTR ERVK 336 533 0 8 1755 483 278 24 90 chr1 153360192 153360315 -43835117 - Lx8 LINE L1 -569 6904 6787 8 1755 1389 227 69 52 chr1 153360315 153360471 -43834961 + ORR1D2 LTR MaLR 3 151 -219 8 1755 221 0 0 33 chr1 153360477 153360507 -43834925 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1755 1141 62 7 0 chr1 153360507 153360646 -43834786 - B1_Mus1 SINE Alu -6 142 3 8 1755 1389 227 69 52 chr1 153360646 153360851 -43834581 + ORR1D2 LTR MaLR 152 370 0 8 1755 483 278 24 90 chr1 153360851 153360893 -43834539 - Lx8 LINE L1 -687 6786 6750 8 1755 543 246 169 11 chr1 153360896 153361085 -43834347 - B4A SINE B4 -65 227 9 8 1755 313 315 62 16 chr1 153361497 153361626 -43833806 + MER57C2 LTR ERV1 270 404 -30 8 1755 575 297 83 49 chr1 153361658 153361762 -43833670 + MER4B-int LTR ERV1 3834 3930 -2828 8 1755 2349 162 16 37 chr1 153361762 153362192 -43833240 - MTC LTR MaLR 0 421 1 8 1755 575 297 83 49 chr1 153362192 153362437 -43832995 + MER4B-int LTR ERV1 3931 4195 -2563 8 1755 1207 54 0 0 chr1 153362441 153362588 -43832844 + B1_Mm SINE Alu 1 147 0 8 1755 887 86 274 7 chr1 153362635 153362788 -43832644 + B2_Mm2 SINE B2 2 195 0 8 1755 2483 182 115 50 chr1 153362814 153363294 -43832138 + RMER1B Other Other 425 942 -124 8 1755 201 74 0 0 chr1 153363294 153363321 -43832111 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1755 2483 182 115 50 chr1 153363321 153363440 -43831992 + RMER1B Other Other 943 1063 -3 8 1755 243 0 0 0 chr1 153363819 153363846 -43831586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1755 597 27 0 0 chr1 153363846 153363921 -43831511 - B1_Mm SINE Alu -10 137 63 8 1755 617 148 23 83 chr1 153364432 153364452 -43830980 + B2_Mm1t SINE B2 2 18 -175 8 1755 3903 190 54 58 chr1 153364452 153365410 -43830022 - RMER17B LTR ERVK -4 954 1 8 1755 617 148 23 83 chr1 153365410 153365522 -43829910 + B2_Mm1t SINE B2 19 126 -67 8 1755 291 85 0 0 chr1 153365524 153365571 -43829861 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1755 1204 41 7 0 chr1 153365581 153365727 -43829705 - B1_Mm SINE Alu 0 147 1 8 1755 1184 55 0 7 chr1 153365907 153366055 -43829377 + B1_Mus2 SINE Alu 1 147 0 8 1755 796 234 70 19 chr1 153366355 153366568 -43828864 + ID_B1 SINE B4 1 224 0 8 1755 482 262 79 57 chr1 153366608 153366835 -43828597 + MER21-int LTR ERV1 1391 1622 -2569 8 1755 1249 247 78 12 chr1 153367007 153367351 -43828081 - ORR1D2 LTR MaLR -3 367 1 8 1755 321 106 0 0 chr1 153367387 153367434 -43827998 - ORR1B1 LTR MaLR -8 386 340 8 1755 1720 133 16 35 chr1 153367905 153368224 -43827208 - ORR1B1 LTR MaLR -41 353 41 8 1755 1424 298 61 45 chr1 153368228 153368671 -43826761 + MER21-int LTR ERV1 1745 2214 -1977 8 1755 1400 84 16 10 chr1 153368671 153368864 -43826568 + B2_Mm2 SINE B2 2 195 0 8 1755 1424 263 60 135 chr1 153368864 153369025 -43826407 + MER21-int LTR ERV1 2215 2308 -1883 8 1755 851 192 0 0 chr1 153369821 153369967 -43825465 + B1_Mus1 SINE Alu 3 148 0 8 1755 610 214 57 7 chr1 153370099 153370231 -43825201 + B1_Mur4 SINE Alu 2 141 -9 8 1755 207 0 0 0 chr1 153370231 153370254 -43825178 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1755 738 250 33 33 chr1 153370369 153370533 -43824899 + B3A SINE B2 1 166 -32 8 1755 225 0 0 0 chr1 153370533 153370558 -43824874 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1755 738 250 33 33 chr1 153370558 153370575 -43824857 + B3A SINE B2 167 182 -16 8 1755 234 219 0 0 chr1 153370575 153370639 -43824793 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1755 706 230 6 30 chr1 153370664 153370830 -43824602 + RSINE1 SINE B4 4 165 0 8 1755 1430 81 16 0 chr1 153371201 153371386 -43824046 - B2_Mm2 SINE B2 -6 189 2 8 1755 24 0 0 0 chr1 153371417 153371441 -43823991 + AT_rich Low_complexity Low_complexity 1 24 0 8 1755 216 0 0 0 chr1 153371441 153371465 -43823967 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1755 1205 43 0 0 chr1 153371466 153371605 -43823827 - B1_Mm SINE Alu -6 141 3 8 1755 1215 141 0 25 chr1 153371665 153371861 -43823571 - B2_Mm2 SINE B2 -3 192 2 8 1755 1148 83 0 0 chr1 153371983 153372127 -43823305 + B1_Mus2 SINE Alu 1 144 -3 8 1755 315 0 0 0 chr1 153372127 153372162 -43823270 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1755 180 350 0 0 chr1 153372217 153372277 -43823155 - MIR SINE MIR -86 176 117 8 1755 554 195 9 0 chr1 153372515 153372628 -43822804 + B1_Mus1 SINE Alu 35 148 0 8 1755 724 265 11 0 chr1 153372881 153373062 -43822370 - B3A SINE B2 -15 183 1 8 1755 1200 61 0 0 chr1 153373370 153373518 -43821914 - B1_Mus1 SINE Alu 0 148 1 8 1755 1391 58 46 0 chr1 153373518 153373691 -43821741 - B2_Mm2 SINE B2 -13 182 1 8 1755 283 280 13 0 chr1 153374021 153374093 -43821339 + ID_B1 SINE B4 32 104 -120 8 1755 1236 228 111 70 chr1 153374093 153374479 -43820953 + MTD LTR MaLR 1 402 -17 8 1755 29 60 0 0 chr1 153374727 153374777 -43820655 + AT_rich Low_complexity Low_complexity 1 50 0 8 1755 265 82 0 39 chr1 153374792 153374843 -43820589 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1755 246 250 39 60 chr1 153374849 153375083 -43820349 + RMER17A LTR ERVK 252 480 -271 8 1755 370 198 100 117 chr1 153375419 153375580 -43819852 - RLTR25A LTR ERVK 0 1028 824 8 1755 525 16 0 0 chr1 153375580 153375642 -43819790 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1755 370 197 96 115 chr1 153375642 153375713 -43819719 - RLTR25A LTR ERVK -198 905 782 8 1755 1099 43 0 21 chr1 153375713 153375846 -43819586 + B1_Mus1 SINE Alu 3 135 -13 8 1755 378 0 0 0 chr1 153375846 153375888 -43819544 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 8 1755 343 208 185 145 chr1 153375898 153375940 -43819492 - RLTR25A LTR ERVK -247 781 742 8 1755 3627 162 90 89 chr1 153376197 153376467 -43818965 - RLTR25A LTR ERVK -185 843 609 8 1755 1044 108 23 151 chr1 153376467 153376686 -43818746 - B2_Mm2 SINE B2 -1 194 4 8 1755 3627 148 78 109 chr1 153376686 153377355 -43818077 - RLTR25A LTR ERVK -412 691 5 8 1755 541 302 73 50 chr1 153377370 153377670 -43817762 + ORR1D2 LTR MaLR 56 362 -8 8 1755 1296 218 30 41 chr1 153377714 153378077 -43817355 + ORR1B2 LTR MaLR 1 359 -8 8 1755 1051 88 0 0 chr1 153378080 153378217 -43817215 + B1_Mus1 SINE Alu 2 138 -10 8 1755 265 232 29 0 chr1 153378377 153378446 -43816986 + L1M1 LINE L1 5371 5441 -743 8 1755 269 285 148 37 chr1 153378514 153378649 -43816783 + L1M1 LINE L1 5394 5543 -646 8 1755 1517 159 27 47 chr1 153378678 153378866 -43816566 + MTB_Mm LTR MaLR 1 192 -215 8 1755 1156 52 0 0 chr1 153378866 153379002 -43816430 + B1_Mus2 SINE Alu 2 137 -10 8 1755 261 0 0 0 chr1 153379002 153379031 -43816401 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1755 786 75 0 0 chr1 153379032 153379138 -43816294 + (GGAAA)n Simple_repeat Simple_repeat 4 109 0 8 1755 1517 159 27 47 chr1 153379138 153379243 -43816189 + MTB_Mm LTR MaLR 193 290 -117 8 1755 414 0 0 0 chr1 153379243 153379289 -43816143 + (TTTAG)n Simple_repeat Simple_repeat 1 46 0 8 1755 627 48 0 0 chr1 153379289 153379371 -43816061 + (TTCTG)n Simple_repeat Simple_repeat 4 86 0 8 1755 764 66 0 0 chr1 153379371 153379477 -43815955 - B1_Mus2 SINE Alu -8 139 34 8 1755 844 134 40 68 chr1 153379433 153379609 -43815823 + MTB_Mm LTR MaLR 251 421 0 8 1755 363 309 37 0 chr1 153379623 153379759 -43815673 + L1M1 LINE L1 5635 5775 -525 8 1755 515 229 76 0 chr1 153379760 153379891 -43815541 + B1F SINE Alu 9 149 0 8 1755 629 170 69 9 chr1 153379911 153380060 -43815372 - MTD LTR MaLR -2 419 249 8 1755 878 120 7 7 chr1 153380069 153380212 -43815220 - B1_Mus1 SINE Alu 0 148 6 8 1755 665 213 16 96 chr1 153380314 153380440 -43814992 - MTD LTR MaLR -247 172 45 8 1755 878 70 141 0 chr1 153380440 153380568 -43814864 + B1_Mus2 SINE Alu 1 146 -1 8 1755 665 213 16 96 chr1 153380568 153380628 -43814804 - MTD LTR MaLR -375 44 1 8 1755 461 263 46 29 chr1 153380713 153380887 -43814545 + L1MA4 LINE L1 5723 5936 -364 8 1755 1073 76 14 0 chr1 153380971 153381116 -43814316 + B1_Mus2 SINE Alu 1 147 0 8 1755 360 0 0 0 chr1 153381116 153381156 -43814276 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1755 208 135 0 0 chr1 153381237 153381274 -43814158 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1755 1911 184 77 3 chr1 153381379 153381771 -43813661 - MTC LTR MaLR 0 421 1 8 1755 294 95 0 0 chr1 153381882 153381924 -43813508 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1755 381 326 178 10 chr1 153382008 153382312 -43813120 + MTE-int LTR MaLR 1 355 -1225 8 1755 327 314 129 17 chr1 153382574 153382752 -43812680 + MTE-int LTR MaLR 745 942 -638 8 1755 33298 71 18 9 chr1 153382752 153386731 -43808701 + L1Md_F2 LINE L1 417 4443 -1440 8 1755 1583 42 0 20 chr1 153386731 153386926 -43808506 + B2_Mm1a SINE B2 2 192 -1 8 1755 33298 63 12 6 chr1 153386926 153388071 -43807361 + L1Md_F2 LINE L1 4444 5586 -297 8 1755 7809 58 9 14 chr1 153388071 153389064 -43806368 + L1Md_F2 LINE L1 5587 6574 -8 8 1755 382 282 128 33 chr1 153389629 153389871 -43805561 - L1ME2 LINE L1 -172 5992 5728 8 1755 386 82 343 67 chr1 153389874 153389897 -43805535 - B2_Mm2 SINE B2 -15 180 162 8 1755 198 0 0 0 chr1 153389897 153389919 -43805513 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 8 1755 386 82 343 67 chr1 153389919 153390000 -43805432 - B2_Mm2 SINE B2 -34 161 47 8 1755 1209 124 11 0 chr1 153390049 153390226 -43805206 - B2_Mm1t SINE B2 -14 179 1 9 1755 417 194 30 10 chr1 153390308 153390407 -43805025 - L1ME2 LINE L1 -704 5740 5640 8 1755 322 220 0 0 chr1 153390508 153390567 -43804865 - RSINE1 SINE B4 -101 64 6 9 1755 616 244 35 11 chr1 153390611 153390785 -43804647 - L1ME2 LINE L1 -588 5574 5397 8 1755 389 249 127 44 chr1 153390799 153390980 -43804452 - B3A SINE B2 -4 212 17 9 1755 444 37 0 0 chr1 153391003 153391057 -43804375 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1755 409 234 8 180 chr1 153391097 153391267 -43804165 - B1F2 SINE Alu 0 149 1 9 1755 270 154 110 49 chr1 153391271 153391353 -43804079 + RLTR41 LTR ERV1 63 149 -297 9 1755 1695 149 22 32 chr1 153391371 153391683 -43803749 + RLTR41 LTR ERV1 132 440 -6 9 1755 271 333 24 0 chr1 153391723 153391881 -43803551 - L1MC1 LINE L1 0 6333 6192 9 1755 346 265 69 164 chr1 153391997 153392259 -43803173 - MT2A LTR ERVL -4 529 293 9 1755 340 235 96 19 chr1 153392284 153392388 -43803044 + RMER2 LTR ERV1 5 116 -451 9 1755 305 261 86 110 chr1 153392462 153392707 -43802725 + RMER2 LTR ERV1 306 544 -23 9 1755 333 311 30 15 chr1 153392882 153393016 -43802416 - MTEa LTR MaLR -243 136 1 9 1755 297 279 177 0 chr1 153393031 153393178 -43802254 - L1MC1 LINE L1 -284 6049 5877 9 1755 453 261 62 138 chr1 153393241 153393530 -43801902 - B4 SINE B4 -12 280 14 9 1755 1263 73 29 4 chr1 153393551 153393750 -43801682 - B2_Mm2 SINE B2 -3 213 2 9 1755 21 0 0 0 chr1 153393753 153393774 -43801658 + AT_rich Low_complexity Low_complexity 1 21 0 9 1755 292 259 92 104 chr1 153393852 153393942 -43801490 - L1MC1 LINE L1 -511 5822 5733 9 1755 826 144 13 58 chr1 153393942 153394097 -43801335 + B1_Mur2 SINE Alu 2 149 0 9 1755 292 267 78 80 chr1 153394097 153394192 -43801240 - L1MC1 LINE L1 -601 5732 5637 9 1755 2080 259 81 20 chr1 153394220 153394814 -43800618 + RMER19B LTR ERVK 19 648 -254 9 1755 746 83 16 48 chr1 153394816 153394942 -43800490 + RLTR41 LTR ERV1 6 127 -319 9 1755 493 270 96 16 chr1 153395006 153395194 -43800238 - L1MC1 LINE L1 -1379 4767 4565 9 1755 458 311 59 30 chr1 153395294 153395496 -43799936 + MLT1A0 LTR MaLR 33 240 -125 9 1755 402 257 19 19 chr1 153395573 153395676 -43799756 - B1F1 SINE Alu -2 147 45 9 1755 1195 47 0 33 chr1 153395687 153395840 -43799592 + B1_Mus1 SINE Alu 1 148 0 9 1755 30 0 0 0 chr1 153395840 153395870 -43799562 + AT_rich Low_complexity Low_complexity 1 30 0 9 1755 1027 102 20 7 chr1 153397331 153397479 -43797953 + B1_Mur4 SINE Alu 1 150 0 9 1755 193 299 0 15 chr1 153397605 153397673 -43797759 - MIRc SINE MIR -115 153 87 9 1755 432 212 0 12 chr1 153398753 153398839 -43796593 - PB1D10 SINE Alu -31 86 2 9 1755 696 89 0 0 chr1 153399074 153399175 -43796257 + (GA)n Simple_repeat Simple_repeat 2 102 0 9 1755 2184 98 13 0 chr1 153399192 153399507 -43795925 + ORR1A2 LTR MaLR 1 319 -8 9 1755 456 281 21 28 chr1 153399715 153399858 -43795574 + B1F2 SINE Alu 1 142 -7 9 1755 1017 103 0 20 chr1 153399868 153400016 -43795416 + B1_Mus2 SINE Alu 1 145 -2 9 1755 522 46 0 0 chr1 153400020 153400085 -43795347 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 9 1755 213 94 0 0 chr1 153400095 153400127 -43795305 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 9 1755 675 278 18 24 chr1 153400390 153400556 -43794876 - RSINE1 SINE B4 0 165 1 9 1755 1172 123 32 5 chr1 153400570 153400758 -43794674 - B2_Mm1t SINE B2 0 193 1 9 1755 35 0 0 0 chr1 153400776 153400811 -43794621 + AT_rich Low_complexity Low_complexity 1 35 0 9 1755 1151 75 0 0 chr1 153400811 153400957 -43794475 - B1_Mus1 SINE Alu 0 148 3 9 1755 262 173 0 19 chr1 153400983 153401036 -43794396 - B1F SINE Alu -1 148 97 9 1755 410 255 10 0 chr1 153401094 153401196 -43794236 - RSINE1 SINE B4 -22 143 41 9 1755 225 0 0 0 chr1 153401223 153401248 -43794184 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1755 267 342 50 0 chr1 153401263 153401278 -43794154 - ID_B1 SINE B4 -29 195 128 9 1755 416 253 11 0 chr1 153401278 153401373 -43794059 - PB1D10 SINE Alu -21 96 1 9 1755 216 170 43 0 chr1 153401760 153401807 -43793625 + A-rich Low_complexity Low_complexity 2 50 0 9 1755 358 255 7 7 chr1 153402054 153402192 -43793240 + (TG)n Simple_repeat Simple_repeat 1 138 0 9 1755 235 265 154 19 chr1 153402244 153402348 -43793084 - RSINE1 SINE B4 -46 119 2 9 1755 1011 90 179 0 chr1 153402359 153402515 -43792917 - B2_Mm2 SINE B2 -11 184 1 9 1755 180 0 0 0 chr1 153402629 153402649 -43792783 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1755 1159 76 0 0 chr1 153402649 153402793 -43792639 - B1_Mm SINE Alu -3 144 1 9 1755 1002 225 27 9 chr1 153402809 153403029 -43792403 - ID_B1 SINE B4 0 224 1 9 1755 438 36 0 0 chr1 153403133 153403189 -43792243 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 9 1755 396 0 0 0 chr1 153403206 153403250 -43792182 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 9 1755 1162 57 0 0 chr1 153403327 153403468 -43791964 + B1_Mm SINE Alu 1 141 -6 9 1755 261 294 72 59 chr1 153403900 153404052 -43791380 + LTR85a LTR Gypsy? 1 154 -548 9 1755 548 191 15 73 chr1 153404086 153404222 -43791210 + RLTR18 LTR ERVK 32 159 -457 9 1755 640 107 19 0 chr1 153404297 153404400 -43791032 - B2_Mm1t SINE B2 -86 107 3 9 1755 1425 258 70 46 chr1 153404400 153404860 -43790572 + RLTR18 LTR ERVK 145 615 -1 9 1755 1113 309 165 8 chr1 153404881 153405481 -43789951 + L1M4c LINE L1 24 717 -5667 9 1755 254 235 14 56 chr1 153405489 153405561 -43789871 - B1F1 SINE Alu -7 142 74 9 1755 358 227 43 160 chr1 153405540 153405659 -43789773 - PB1D10 SINE Alu -26 123 19 9 1755 593 49 12 0 chr1 153405766 153405847 -43789585 + (GA)n Simple_repeat Simple_repeat 1 82 0 9 1755 287 348 7 86 chr1 153405859 153406010 -43789422 - MTEa LTR MaLR -238 141 3 9 1755 249 287 83 9 chr1 153406012 153406121 -43789311 + L1M4c LINE L1 2880 2996 -3386 9 1755 870 149 6 43 chr1 153406160 153406321 -43789111 - URR1A DNA MER1_type -2 224 70 9 1755 2156 168 72 54 chr1 153406331 153406646 -43788786 + RLTR11A LTR ERVK 13 345 -183 9 1755 3539 23 2 0 chr1 153406646 153407041 -43788391 - MTA_Mm LTR MaLR 0 396 1 9 1755 2156 168 72 54 chr1 153407041 153407228 -43788204 + RLTR11A LTR ERVK 346 524 -4 9 1755 1182 49 0 7 chr1 153407307 153407451 -43787981 + B1_Mus1 SINE Alu 5 147 -1 9 1755 249 57 0 0 chr1 153407456 153407491 -43787941 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1755 967 120 51 0 chr1 153408254 153408412 -43787020 - MT2B LTR ERVL -434 167 2 9 1755 735 267 42 23 chr1 153408450 153408665 -43786767 - ID_B1 SINE B4 -4 220 2 9 1755 243 133 0 0 chr1 153408836 153408881 -43786551 + (CAT)n Simple_repeat Simple_repeat 2 46 0 9 1755 201 303 11 33 chr1 153408892 153408984 -43786448 + (TATG)n Simple_repeat Simple_repeat 3 92 0 9 1755 1152 76 0 0 chr1 153409790 153409935 -43785497 - B1_Mus1 SINE Alu -2 146 2 9 1755 216 0 0 0 chr1 153410021 153410045 -43785387 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9 1755 246 62 0 0 chr1 153411952 153411984 -43783448 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 1755 206 176 0 19 chr1 153411989 153412041 -43783391 + CT-rich Low_complexity Low_complexity 1 51 0 9 1755 844 159 7 0 chr1 153412041 153412179 -43783253 - B1_Mur1 SINE Alu -2 147 9 9 1755 23 78 0 0 chr1 153412391 153412442 -43782990 + AT_rich Low_complexity Low_complexity 1 51 0 9 1755 469 279 14 29 chr1 153412442 153412582 -43782850 + RSINE1 SINE B4 3 140 -25 9 1755 213 121 0 0 chr1 153412595 153412628 -43782804 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1755 413 237 70 12 chr1 153412987 153413158 -43782274 - Lx7 LINE L1 -4 7692 7512 9 1755 1098 87 0 0 chr1 153413165 153413338 -43782094 + (CA)n Simple_repeat Simple_repeat 1 173 0 9 1755 324 0 0 0 chr1 153414431 153414467 -43780965 + (GA)n Simple_repeat Simple_repeat 1 36 0 9 1755 695 211 13 45 chr1 153414561 153414715 -43780717 + B1_Mur4 SINE Alu 2 150 0 9 1755 201 39 0 0 chr1 153414718 153414744 -43780688 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1755 773 136 8 0 chr1 153414906 153415031 -43780401 + B1_Mus1 SINE Alu 23 148 0 9 1755 249 57 0 0 chr1 153415217 153415252 -43780180 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1755 553 195 64 16 chr1 153415258 153415383 -43780049 + RSINE1 SINE B4 1 131 -34 9 1755 1789 124 7 30 chr1 153415735 153416112 -43779320 - ORR1A2 LTR MaLR -8 338 1 9 1755 349 371 27 45 chr1 153416125 153416348 -43779084 + ORR1E LTR MaLR 21 239 -120 9 1755 329 243 14 0 chr1 153416365 153416439 -43778993 + PB1D10 SINE Alu 41 115 -2 9 1755 228 100 0 0 chr1 153416911 153416951 -43778481 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 1755 782 149 27 41 chr1 153416951 153417098 -43778334 - B1_Mur3 SINE Alu -2 147 3 9 1755 217 203 40 13 chr1 153417139 153417214 -43778218 + T-rich Low_complexity Low_complexity 5 81 0 9 1755 442 289 93 16 chr1 153417215 153417408 -43778024 - ID_B1 SINE B4 -1 223 16 9 1755 347 271 0 20 chr1 153417650 153417748 -43777684 - L2 LINE L2 -741 2678 2583 9 1755 1790 84 24 4 chr1 153419626 153419878 -43775554 - L1_Mur2 LINE L1 -1571 4306 4050 9 1755 3773 117 32 0 chr1 153419878 153420432 -43775000 + Lx4A LINE L1 6485 7056 -2 9 1755 1175 75 0 0 chr1 153421693 153421840 -43773592 - B1_Mm SINE Alu 0 147 1 9 1755 351 322 52 26 chr1 153422650 153422803 -43772629 - RSINE1 SINE B4 -6 159 3 9 1755 198 0 0 0 chr1 153422819 153422841 -43772591 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1755 1071 153 117 19 chr1 153422879 153423085 -43772347 + URR1A DNA MER1_type 1 226 0 9 1755 440 248 103 0 chr1 153423177 153423294 -43772138 + RSINE1 SINE B4 3 131 -34 9 1755 387 0 0 0 chr1 153423313 153423356 -43772076 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 9 1755 469 295 101 0 chr1 153423377 153423506 -43771926 + RSINE1 SINE B4 3 144 -21 9 1755 1034 141 0 0 chr1 153423570 153423719 -43771713 - B1_Mur3 SINE Alu 0 149 1 9 1755 225 319 0 65 chr1 153423923 153424000 -43771432 + PB1D10 SINE Alu 14 85 -32 9 1755 557 242 53 13 chr1 153424189 153424340 -43771092 - B3A SINE B2 -15 183 27 1 1755 23 33 0 0 chr1 153424340 153424370 -43771062 + AT_rich Low_complexity Low_complexity 1 30 0 1 1755 251 267 25 74 chr1 153424378 153424459 -43770973 - RSINE1 SINE B4 -1 164 88 1 1755 2260 151 23 63 chr1 153424852 153425327 -43770105 - RMER15 LTR ERVL -52 523 68 1 1755 1051 102 60 0 chr1 153425355 153425522 -43769910 + URR1B DNA MER1_type 49 225 0 1 1755 469 300 144 61 chr1 153425699 153426171 -43769261 + MLT1J LTR MaLR 2 512 0 1 1755 814 145 71 21 chr1 153426500 153426641 -43768791 + B1_Mur3 SINE Alu 2 149 0 1 1755 27 29 0 0 chr1 153426880 153426914 -43768518 + AT_rich Low_complexity Low_complexity 1 34 0 1 1755 973 150 4 15 chr1 153427062 153427332 -43768100 + G-rich Low_complexity Low_complexity 1 267 0 1 1755 237 128 0 0 chr1 153427547 153427594 -43767838 + (CAGC)n Simple_repeat Simple_repeat 2 48 0 1 1755 243 322 61 27 chr1 153427895 153428042 -43767390 - L1ME3B LINE L1 -10 6230 6079 1 1755 275 287 110 83 chr1 153428065 153428293 -43767139 - MLT1H2 LTR MaLR -3 486 253 1 1755 399 275 36 51 chr1 153428340 153428478 -43766954 + MTEa LTR MaLR 241 376 -3 1 1755 1911 110 100 12 chr1 153429071 153429404 -43766028 - ORR1B1 LTR MaLR 0 394 32 1 1755 474 18 0 0 chr1 153429404 153429459 -43765973 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1755 240 248 142 71 chr1 153429505 153429674 -43765758 - MLT1H2 LTR MaLR -420 190 10 1 1755 185 267 0 22 chr1 153431483 153431529 -43763903 - MIRb SINE MIR 0 268 224 1 1755 516 270 113 110 chr1 153431736 153431780 -43763652 - B4A SINE B4 0 292 260 1 1755 1756 228 49 20 chr1 153431780 153432187 -43763245 - MTD LTR MaLR 0 419 1 1 1755 516 270 113 110 chr1 153432187 153432433 -43762999 - B4A SINE B4 -33 259 1 1 1755 189 215 121 15 chr1 153433255 153433321 -43762111 - MIRb SINE MIR -40 228 156 1 1755 662 213 16 16 chr1 153433469 153433598 -43761834 - ID_B1 SINE B4 -3 221 93 1 1755 372 286 98 31 chr1 153433884 153434266 -43761166 - Charlie4a DNA MER1_type -79 429 18 1 1755 207 0 0 0 chr1 153434434 153434457 -43760975 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1755 225 152 43 0 chr1 153434460 153434506 -43760926 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 1 1755 819 152 0 0 chr1 153434510 153434688 -43760744 + GA-rich Low_complexity Low_complexity 2 179 0 1 1755 675 295 65 12 chr1 153434691 153434938 -43760494 - B4A SINE B4 -31 261 2 1 1755 1024 214 5 28 chr1 153435355 153435571 -43759861 + B3 SINE B2 1 211 -5 1 1755 26 0 0 0 chr1 153435573 153435599 -43759833 + AT_rich Low_complexity Low_complexity 1 26 0 1 1755 186 103 0 0 chr1 153435846 153435875 -43759557 + (CAAAC)n Simple_repeat Simple_repeat 3 31 0 1 1755 1174 124 11 11 chr1 153436110 153436290 -43759142 - B2_Mm2 SINE B2 -15 180 1 1 1755 697 247 73 12 chr1 153436310 153436450 -43758982 + B3A SINE B2 1 152 -46 1 1755 219 69 0 0 chr1 153436450 153436479 -43758953 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1755 697 247 73 12 chr1 153436479 153436502 -43758930 + B3A SINE B2 153 174 -24 1 1755 24 32 0 0 chr1 153436549 153436580 -43758852 + AT_rich Low_complexity Low_complexity 1 31 0 1 1755 1269 63 21 21 chr1 153436903 153436940 -43758492 - B2_Mm2 SINE B2 -1 194 160 1 1755 330 26 0 0 chr1 153436940 153436979 -43758453 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1755 1269 63 21 21 chr1 153436979 153437134 -43758298 - B2_Mm2 SINE B2 -36 159 2 1 1755 622 164 107 23 chr1 153437139 153437270 -43758162 - B1_Mus2 SINE Alu -1 146 5 1 1755 416 67 17 0 chr1 153437423 153437483 -43757949 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 1 1755 267 271 91 27 chr1 153437484 153437594 -43757838 - PB1D10 SINE Alu 0 117 1 1 1755 509 250 22 7 chr1 153437594 153437677 -43757755 - B4 SINE B4 -207 85 1 1 1755 1367 221 66 6 chr1 153438315 153438633 -43756799 + Lx6 LINE L1 7122 7458 -2 1 1755 411 202 31 41 chr1 153439976 153440074 -43755358 - B1F SINE Alu -36 113 17 1 1755 808 140 28 7 chr1 153441072 153441216 -43754216 - B1_Mur4 SINE Alu -3 147 1 1 1755 333 0 0 0 chr1 153441223 153441260 -43754172 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1755 438 280 45 99 chr1 153441297 153441499 -43753933 - B3A SINE B2 -7 191 1 1 1755 238 258 0 29 chr1 153441536 153441604 -43753828 - L1M5 LINE L1 -330 5794 5729 1 1755 534 246 15 8 chr1 153441617 153441748 -43753684 - B1F SINE Alu 0 149 18 1 1755 758 236 49 95 chr1 153441757 153442042 -43753390 - B4 SINE B4 -16 276 5 1 1755 278 289 0 10 chr1 153442481 153442579 -43752853 - L1MB4 LINE L1 0 6180 6084 1 1755 493 283 62 132 chr1 153442620 153443059 -43752373 - MLT1A1 LTR MaLR 0 408 1 1 1755 25 31 0 0 chr1 153444350 153444382 -43751050 + AT_rich Low_complexity Low_complexity 1 32 0 1 1755 227 116 0 44 chr1 153444458 153444503 -43750929 + T-rich Low_complexity Low_complexity 2 44 0 1 1755 379 242 30 84 chr1 153444503 153444634 -43750798 - Lx8 LINE L1 -93 7380 7257 1 1755 312 290 120 35 chr1 153445141 153445341 -43750091 - L3 LINE CR1 -2263 2226 2010 1 1755 1637 127 92 75 chr1 153445594 153445942 -43749490 - ORR1B1 LTR MaLR 0 394 41 1 1755 306 250 0 0 chr1 153446235 153446299 -43749133 - URR1B DNA MER1_type -160 65 2 1 1755 23 33 0 0 chr1 153446924 153446954 -43748478 + AT_rich Low_complexity Low_complexity 1 30 0 1 1755 6174 126 5 32 chr1 153447008 153447901 -43747531 - L1_Mm LINE L1 -431 5452 4585 1 1755 1424 94 0 5 chr1 153447901 153448094 -43747338 - B2_Mm2 SINE B2 -3 192 1 1 1755 6174 126 5 32 chr1 153448094 153448189 -43747243 - L1_Mm LINE L1 -1299 4584 4491 1 1755 304 285 101 44 chr1 153449140 153449298 -43746134 - RLTR13C2 LTR ERVK 0 808 642 1 1755 234 158 0 0 chr1 153449554 153449592 -43745840 - B2_Mm2 SINE B2 -157 38 1 1 1755 22 88 0 0 chr1 153449624 153449681 -43745751 + AT_rich Low_complexity Low_complexity 1 57 0 1 1755 216 0 0 0 chr1 153450680 153450704 -43744728 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1755 205 152 0 0 chr1 153450883 153450916 -43744516 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 1 1755 275 304 163 0 chr1 153451171 153451263 -43744169 - PB1D10 SINE Alu -8 109 3 1 1755 336 322 102 0 chr1 153451263 153451306 -43744126 - ID_B1 SINE B4 -129 95 41 1 1755 252 0 0 0 chr1 153452365 153452393 -43743039 + (GGAGA)n Simple_repeat Simple_repeat 1 28 0 1 1755 387 322 25 24 chr1 153452826 153453057 -43742375 - MIRm SINE MIR -34 234 6 1 1755 448 198 12 0 chr1 153453465 153453546 -43741886 + ID_B1 SINE B4 119 200 -24 1 1755 332 233 73 55 chr1 153453546 153453574 -43741858 + B1F SINE Alu 38 148 -1 1 1755 1141 225 38 115 chr1 153454311 153454703 -43740729 - MTE2a LTR MaLR -17 362 1 1 1755 579 296 35 0 chr1 153456291 153456460 -43738972 + B4A SINE B4 116 290 -2 1 1755 21 57 0 0 chr1 153456490 153456525 -43738907 + AT_rich Low_complexity Low_complexity 1 35 0 1 1755 694 271 60 15 chr1 153456578 153456914 -43738518 - Lx7 LINE L1 -1546 5927 5606 1 1755 1431 154 151 22 chr1 153457783 153458102 -43737330 + MTC LTR MaLR 62 421 0 1 1755 1082 56 0 0 chr1 153458306 153458448 -43736984 - B1_Mus1 SINE Alu 0 148 7 1 1755 435 254 27 0 chr1 153458501 153458611 -43736821 + RSINE1 SINE B4 17 129 -36 1 1755 455 82 0 14 chr1 153458624 153458698 -43736734 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1755 315 0 0 0 chr1 153458787 153458822 -43736610 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1755 242 307 40 0 chr1 153458995 153459096 -43736336 - Kanga1 DNA Tc2 -1154 591 493 1 1755 2508 45 3 0 chr1 153459170 153459461 -43735971 - L1_Mus1 LINE L1 -122 6445 6154 1 1755 840 10 0 0 chr1 153459462 153459566 -43735866 + L1_Mus1 LINE L1 6464 6567 0 1 1755 329 308 156 5 chr1 153459622 153459808 -43735624 - Kanga1 DNA Tc2 -1394 351 138 1 1755 550 199 165 33 chr1 153459863 153460045 -43735387 + ID_B1 SINE B4 1 206 -18 1 1755 235 258 103 0 chr1 153459963 153460060 -43735372 + B1F SINE Alu 40 146 -3 1 1755 537 90 0 0 chr1 153460169 153460258 -43735174 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1755 924 240 15 5 chr1 153460383 153460588 -43734844 - B3 SINE B2 -9 207 1 1 1755 462 322 84 20 chr1 153460610 153460813 -43734619 - B4A SINE B4 -72 220 5 1 1755 382 230 0 0 chr1 153460828 153460902 -43734530 - ID_B1 SINE B4 -5 219 146 1 1755 1132 75 0 14 chr1 153460908 153461056 -43734376 - B1_Mus2 SINE Alu 0 147 2 1 1755 375 272 26 111 chr1 153461056 153461128 -43734304 - B1F SINE Alu -82 67 5 1 1755 198 0 0 0 chr1 153461800 153461822 -43733610 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1755 562 135 0 0 chr1 153461996 153462085 -43733347 - B1_Mus2 SINE Alu 0 147 59 1 1755 216 67 0 0 chr1 153462516 153462546 -43732886 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1755 299 331 113 0 chr1 153463267 153463409 -43732023 + RSINE1 SINE B4 3 160 -5 1 1755 3510 157 149 26 chr1 153463586 153464385 -43731047 - RMER19B LTR ERVK -5 897 1 1 1755 2831 202 55 59 chr1 153464670 153465343 -43730089 - Lx2B LINE L1 -1 6999 6330 1 1755 705 82 0 0 chr1 153465723 153465820 -43729612 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1755 378 233 28 28 chr1 153467108 153467214 -43728218 - B1F SINE Alu -1 148 43 1 1755 354 272 19 10 chr1 153468291 153468397 -43727035 + PB1D7 SINE Alu 14 120 0 1 1755 26 0 0 0 chr1 153468718 153468744 -43726688 + AT_rich Low_complexity Low_complexity 1 26 0 1 1755 410 0 0 20 chr1 153468774 153468825 -43726607 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1755 698 231 49 0 chr1 153469366 153469509 -43725923 + RSINE1 SINE B4 12 161 -4 1 1755 186 340 0 0 chr1 153470108 153470158 -43725274 - MIR SINE MIR -150 112 63 1 1755 887 145 21 0 chr1 153470520 153470665 -43724767 - B1_Mur4 SINE Alu 0 150 3 1 1755 547 252 45 13 chr1 153470796 153470953 -43724479 - RSINE1 SINE B4 -1 164 3 1 1755 406 217 54 0 chr1 153471008 153471100 -43724332 + B1F SINE Alu 53 149 0 1 1755 1443 162 50 35 chr1 153472122 153472404 -43723028 + Lx2B LINE L1 6715 7000 0 1 1755 346 294 78 0 chr1 153472574 153472814 -43722618 + L1MD LINE L1 5136 5410 -830 1 1755 198 103 0 0 chr1 153473108 153473137 -43722295 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1755 26 0 0 0 chr1 153473267 153473293 -43722139 + AT_rich Low_complexity Low_complexity 1 26 0 1 1755 493 231 121 49 chr1 153474264 153474514 -43720918 - MLT2B4 LTR ERVL -26 530 210 1 1755 267 31 0 0 chr1 153475505 153475537 -43719895 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1 1755 619 192 12 0 chr1 153476322 153476494 -43718938 + (TG)n Simple_repeat Simple_repeat 2 175 0 1 1755 737 41 10 0 chr1 153477354 153477451 -43717981 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 1 1755 1281 184 0 5 chr1 153478169 153478393 -43717039 - URR1B DNA MER1_type -2 223 1 1 1755 261 0 0 0 chr1 153479452 153479481 -43715951 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1755 786 191 50 60 chr1 153479794 153479994 -43715438 + B3A SINE B2 1 198 0 1 1755 287 247 237 0 chr1 153480479 153480572 -43714860 - PB1D10 SINE Alu -1 116 2 1 1755 206 360 0 0 chr1 153480845 153480920 -43714512 - MIRb SINE MIR -28 240 166 1 1755 819 243 183 29 chr1 153482835 153483081 -43712351 - B4A SINE B4 -3 289 6 1 1755 269 265 20 9 chr1 153483996 153484086 -43711346 - L2a LINE L2 -89 3337 3198 1 1755 306 0 0 0 chr1 153484541 153484575 -43710857 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1755 698 225 152 33 chr1 153484576 153484820 -43710612 - B4 SINE B4 -17 275 3 1 1755 468 0 0 0 chr1 153485107 153485159 -43710273 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 219 677 220 20 0 chr1 153485171 153485321 -43710111 - B3A SINE B2 -44 154 2 1 1756 527 170 0 26 chr1 153485326 153485441 -43709991 + (ATGGTG)n Simple_repeat Simple_repeat 5 116 0 1 1756 707 278 24 38 chr1 153485816 153486029 -43709403 + B3 SINE B2 1 210 -6 1 1756 1312 101 5 16 chr1 153486394 153486585 -43708847 - B2_Mm2 SINE B2 -6 189 1 1 1756 21 0 0 0 chr1 153486682 153486703 -43708729 + AT_rich Low_complexity Low_complexity 1 21 0 1 1756 847 132 54 8 chr1 153487021 153487151 -43708281 + B1_Mur3 SINE Alu 1 136 -13 1 1756 180 0 0 0 chr1 153487151 153487171 -43708261 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1756 445 248 64 0 chr1 153487303 153487412 -43708020 - PB1D9 SINE Alu -2 118 3 1 1756 489 230 201 111 chr1 153487415 153487488 -43707944 + MTE2a LTR MaLR 17 70 -309 1 1756 1806 178 21 54 chr1 153487488 153487875 -43707557 - ORR1D1 LTR MaLR 0 374 1 1 1756 489 230 201 111 chr1 153487875 153487966 -43707466 + MTE2a LTR MaLR 71 187 -192 1 1756 189 0 0 0 chr1 153487966 153487987 -43707445 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 1 1756 489 230 201 111 chr1 153487987 153488154 -43707278 + MTE2a LTR MaLR 188 379 0 1 1756 182 318 0 0 chr1 153488797 153488841 -43706591 - MIRm SINE MIR -4 272 229 1 1756 245 100 0 20 chr1 153489906 153489957 -43705475 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 1 1756 1565 47 0 15 chr1 153490142 153490337 -43705095 - B2_Mm1a SINE B2 0 193 2 1 1756 367 266 133 0 chr1 153490625 153490753 -43704679 + MIRb SINE MIR 73 217 -51 1 1756 372 158 17 34 chr1 153491459 153491577 -43703855 + GA-rich Low_complexity Low_complexity 5 120 0 1 1756 261 109 0 0 chr1 153491756 153491802 -43703630 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1756 180 0 0 0 chr1 153491833 153491853 -43703579 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1756 282 286 43 11 chr1 153492357 153492449 -43702983 + MER20 DNA MER1_type 124 218 -1 1 1756 209 340 50 75 chr1 153492849 153493049 -43702383 + MIR3 SINE MIR 7 201 -7 1 1756 334 358 62 52 chr1 153494090 153494414 -43701018 - MLT1J LTR MaLR -115 397 71 1 1756 1199 90 0 11 chr1 153494847 153495027 -43700405 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 1 1756 639 139 142 37 chr1 153495027 153495161 -43700271 - B1_Mur3 SINE Alu 0 149 2 1 1756 469 293 21 21 chr1 153496876 153497019 -43698413 - B1F1 SINE Alu -2 147 5 1 1756 546 278 23 23 chr1 153497533 153497710 -43697722 + B3A SINE B2 4 180 -18 1 1756 257 349 28 9 chr1 153497732 153497839 -43697593 - MER5A DNA MER1_type -39 150 42 1 1756 267 270 14 0 chr1 153498871 153498945 -43696487 + Tigger5 DNA MER2_type 232 306 -2100 1 1756 529 231 42 7 chr1 153498950 153499094 -43696338 + Tigger5 DNA MER2_type 2186 2334 -72 1 1756 954 90 0 0 chr1 153499122 153499256 -43696176 + (TTCTC)n Simple_repeat Simple_repeat 2 135 0 1 1756 725 141 86 0 chr1 153499265 153499393 -43696039 - B1_Mur4 SINE Alu 0 150 12 1 1756 420 20 0 0 chr1 153499613 153499662 -43695770 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1756 794 142 11 28 chr1 153499780 153499961 -43695471 + (TATG)n Simple_repeat Simple_repeat 2 179 0 1 1756 505 286 8 0 chr1 153500000 153500126 -43695306 - RSINE1 SINE B4 -38 127 1 1 1756 423 0 0 0 chr1 153500160 153500207 -43695225 + (TAA)n Simple_repeat Simple_repeat 1 47 0 2 1756 1256 41 0 0 chr1 153501902 153502048 -43693384 + B1_Mus2 SINE Alu 2 147 0 3 1756 25 0 0 0 chr1 153502055 153502080 -43693352 + AT_rich Low_complexity Low_complexity 1 25 0 4 1756 844 184 0 0 chr1 153503171 153503312 -43692120 - B1_Mur4 SINE Alu -9 141 1 5 1756 783 138 288 0 chr1 153503326 153503486 -43691946 - B3 SINE B2 -10 206 1 6 1756 264 59 0 0 chr1 153504865 153504899 -43690533 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1756 1155 63 6 0 chr1 153504900 153505059 -43690373 - B2_Mm1a SINE B2 -33 160 1 8 1756 22 35 0 0 chr1 153505359 153505388 -43690044 + AT_rich Low_complexity Low_complexity 1 29 0 9 1756 285 28 0 0 chr1 153505492 153505528 -43689904 - U2 snRNA snRNA -152 36 1 1 1756 317 215 0 0 chr1 153506013 153506078 -43689354 + ID4 SINE ID 2 66 -17 1 1756 516 256 119 70 chr1 153506258 153506560 -43688872 - Lx8 LINE L1 0 7473 7157 1 1756 443 233 67 10 chr1 153506803 153506907 -43688525 + ID_B1 SINE B4 82 191 -33 1 1756 382 213 59 92 chr1 153506907 153506922 -43688510 + PB1D10 SINE Alu 1 115 -2 1 1756 457 205 142 9 chr1 153507323 153507436 -43687996 - RSINE1 SINE B4 -36 129 2 1 1756 436 243 54 0 chr1 153507436 153507543 -43687889 - MLT1C LTR MaLR -292 175 63 1 1756 520 317 58 27 chr1 153507791 153508083 -43687349 + RMER5 LTR ERV1 80 380 -154 1 1756 329 258 123 15 chr1 153508629 153508759 -43686673 - B1F SINE Alu -3 146 3 1 1756 236 241 0 79 chr1 153509506 153509569 -43685863 - tRNA-Ala-GCY_ tRNA tRNA -9 66 9 1 1756 480 111 0 0 chr1 153509861 153509942 -43685490 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1756 288 250 80 0 chr1 153510023 153510111 -43685321 + B3A SINE B2 46 140 -58 2 1756 255 79 0 0 chr1 153510798 153510836 -43684596 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1756 537 221 147 0 chr1 153510843 153510979 -43684453 - B3A SINE B2 -42 156 1 2 1756 387 0 0 0 chr1 153511209 153511252 -43684180 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1756 624 203 69 44 chr1 153511263 153511423 -43684009 - B3A SINE B2 -16 182 19 2 1756 583 162 214 0 chr1 153511795 153511912 -43683520 - B1_Mur4 SINE Alu -7 143 2 2 1756 391 216 25 14 chr1 153512616 153512756 -43682676 + B3 SINE B2 1 207 -9 2 1756 244 211 0 19 chr1 153512869 153512922 -43682510 + CT-rich Low_complexity Low_complexity 2 53 0 2 1756 477 270 0 0 chr1 153513378 153513493 -43681939 + PB1D7 SINE Alu 1 115 -5 2 1756 1284 231 109 19 chr1 153513652 153514019 -43681413 - MTD LTR MaLR -15 404 5 3 1756 1262 62 50 22 chr1 153515715 153515895 -43679537 - B2_Mm2 SINE B2 -9 186 2 3 1756 311 349 17 61 chr1 153515902 153516002 -43679430 - L1M5 LINE L1 -988 5158 5056 3 1756 1500 77 0 5 chr1 153516002 153516198 -43679234 - B2_Mm2 SINE B2 0 195 1 3 1756 311 349 17 61 chr1 153516198 153516247 -43679185 - L1M5 LINE L1 -1091 5055 5015 3 1756 719 200 75 84 chr1 153516247 153516460 -43678972 - B3 SINE B2 -5 211 1 3 1756 311 349 17 61 chr1 153516460 153516602 -43678830 - L1M5 LINE L1 -1132 5014 4879 3 1756 242 218 36 0 chr1 153517697 153517752 -43677680 - L2a LINE L2 -3 3423 3367 3 1756 243 0 0 0 chr1 153517998 153518025 -43677407 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 3 1756 985 207 11 13 chr1 153518025 153518227 -43677205 - B3 SINE B2 -16 200 3 3 1756 611 88 0 11 chr1 153519351 153519443 -43675989 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 3 1756 1083 71 7 0 chr1 153519452 153519592 -43675840 - B1_Mus2 SINE Alu -6 141 1 3 1756 3051 129 45 65 chr1 153519614 153520186 -43675246 - Lx4A LINE L1 -1 7057 6497 4 1756 340 128 167 14 chr1 153520186 153520306 -43675126 - L1_Mur2 LINE L1 -6453 259 35 4 1756 657 125 50 35 chr1 153520425 153520558 -43674874 - B1_Mur3 SINE Alu -10 138 5 4 1756 283 302 75 8 chr1 153520667 153520787 -43674645 + MER33 DNA MER1_type 4 131 -193 4 1756 370 279 114 69 chr1 153520860 153521149 -43674283 - MTEa LTR MaLR -59 320 19 4 1756 849 182 90 40 chr1 153521163 153521363 -43674069 + B3 SINE B2 2 211 -5 4 1756 242 236 54 54 chr1 153521408 153521520 -43673912 + MER33 DNA MER1_type 185 296 -28 4 1756 354 290 0 0 chr1 153521632 153521770 -43673662 + (TG)n Simple_repeat Simple_repeat 2 139 0 4 1756 618 172 0 43 chr1 153522024 153522212 -43673220 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1756 204 40 0 0 chr1 153522738 153522763 -43672669 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 4 1756 3800 161 68 44 chr1 153522990 153523830 -43671602 + RLTR25B LTR ERVK 8 867 -161 4 1756 303 140 0 0 chr1 153523836 153523893 -43671539 + RLTR25B LTR ERVK 972 1028 0 4 1756 548 143 0 10 chr1 153524593 153524692 -43670740 + CT-rich Low_complexity Low_complexity 2 99 0 5 1756 441 54 0 0 chr1 153525549 153525605 -43669827 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1756 333 0 0 0 chr1 153525608 153525645 -43669787 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 1756 1302 14 0 0 chr1 153525686 153525833 -43669599 + B1_Mus2 SINE Alu 1 147 0 5 1756 566 118 11 21 chr1 153525851 153525946 -43669486 - B2_Mm2 SINE B2 -100 95 2 5 1756 573 55 0 0 chr1 153526239 153526312 -43669120 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1756 252 308 0 0 chr1 153526342 153526420 -43669012 + MIRc SINE MIR 148 219 -49 5 1756 202 200 0 107 chr1 153526688 153526744 -43668688 + L3b LINE CR1 79 128 -354 5 1756 3551 203 69 115 chr1 153526949 153528020 -43667412 - RMER1B Other Other -2 1064 43 5 1756 396 327 45 13 chr1 153528391 153528546 -43666886 + MER5A DNA MER1_type 7 166 -23 5 1756 1579 43 0 0 chr1 153529160 153529346 -43666086 + B2_Mm1t SINE B2 2 187 -6 6 1756 21 0 0 0 chr1 153530353 153530374 -43665058 + AT_rich Low_complexity Low_complexity 1 21 0 6 1756 36 40 0 0 chr1 153530960 153531010 -43664422 + AT_rich Low_complexity Low_complexity 1 50 0 6 1756 1564 124 27 31 chr1 153531013 153531271 -43664161 - Lx4A LINE L1 -3 7055 6799 6 1756 231 36 0 0 chr1 153532634 153532662 -43662770 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1756 231 372 0 11 chr1 153532697 153532792 -43662640 + L3 LINE CR1 4289 4382 -107 6 1756 324 0 0 0 chr1 153534865 153534901 -43660531 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1756 575 282 61 0 chr1 153535032 153535163 -43660269 - RSINE1 SINE B4 0 165 27 6 1756 794 127 7 14 chr1 153535212 153535356 -43660076 + URR1B DNA MER1_type 83 225 0 6 1756 380 272 89 32 chr1 153535356 153535394 -43660038 - CYRA11_Mm Unknown Y-chromosome -296 291 121 6 1756 250 191 73 12 chr1 153535478 153535562 -43659870 + PB1D10 SINE Alu 35 132 -17 7 1756 201 154 0 0 chr1 153535634 153535673 -43659759 + T-rich Low_complexity Low_complexity 3 41 0 7 1756 948 136 0 21 chr1 153535688 153535831 -43659601 - B1_Mur4 SINE Alu -9 141 2 7 1756 309 277 52 39 chr1 153535989 153536143 -43659289 + MIR SINE MIR 36 191 -71 7 1756 793 173 249 0 chr1 153537498 153537671 -43657761 - B3 SINE B2 0 216 1 7 1756 222 37 0 0 chr1 153537760 153537787 -43657645 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1756 1209 61 0 0 chr1 153538385 153538533 -43656899 - B1_Mus1 SINE Alu 0 148 1 7 1756 699 76 0 0 chr1 153538534 153538626 -43656806 - 4.5SRNA scRNA scRNA -2 92 1 7 1756 334 283 62 48 chr1 153538738 153538883 -43656549 - B1F SINE Alu -2 147 1 7 1756 237 33 0 0 chr1 153539085 153539115 -43656317 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 7 1756 900 17 185 0 chr1 153539841 153539960 -43655472 - L1Md_A LINE L1 -1 6581 6441 8 1756 1363 78 0 54 chr1 153540758 153540962 -43654470 - B2_Mm2 SINE B2 -1 194 2 8 1756 412 292 17 17 chr1 153541737 153541852 -43653580 - PB1D10 SINE Alu 0 117 3 8 1756 413 111 0 27 chr1 153541915 153541989 -43653443 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 8 1756 656 295 56 53 chr1 153543496 153543818 -43651614 + MER2 DNA MER2_type 9 331 -14 8 1756 513 292 52 9 chr1 153544149 153544360 -43651072 + MER58A DNA MER1_type 3 222 -2 8 1756 252 337 49 0 chr1 153545366 153545505 -43649927 - MIR SINE MIR -69 193 53 8 1756 261 273 35 46 chr1 153546138 153546311 -43649121 - Lx8 LINE L1 -2 7471 7301 8 1756 463 284 0 90 chr1 153546377 153546555 -43648877 - RSINE1 SINE B4 -2 163 2 8 1756 229 200 127 0 chr1 153546555 153546610 -43648822 - Lx8 LINE L1 -363 7110 7049 8 1756 319 301 21 42 chr1 153547478 153547620 -43647812 + CT-rich Low_complexity Low_complexity 4 142 0 8 1756 432 0 0 0 chr1 153548089 153548137 -43647295 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1756 235 154 0 71 chr1 153548233 153548289 -43647143 - L1MA5 LINE L1 -6 6294 6243 9 1756 345 284 107 13 chr1 153548843 153548993 -43646439 - L1MA4 LINE L1 -57 6243 6080 9 1756 354 311 15 0 chr1 153549085 153549217 -43646215 + (TG)n Simple_repeat Simple_repeat 1 134 0 9 1756 276 30 0 0 chr1 153549227 153549260 -43646172 + (TATG)n Simple_repeat Simple_repeat 2 34 0 9 1756 579 220 24 184 chr1 153549954 153550166 -43645266 + B3A SINE B2 14 191 -4 9 1756 212 234 30 30 chr1 153551254 153551320 -43644112 - MER5B DNA MER1_type -11 167 102 9 1756 429 36 0 0 chr1 153551322 153551377 -43644055 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1756 753 229 39 19 chr1 153551517 153551722 -43643710 - B3 SINE B2 -6 210 2 9 1756 533 233 45 37 chr1 153552067 153552201 -43643231 + ID_B1 SINE B4 84 218 -6 9 1756 876 290 50 58 chr1 153552363 153552725 -43642707 - ORR1E LTR MaLR 0 359 1 1 1756 210 71 0 0 chr1 153552870 153552898 -43642534 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1756 515 267 117 35 chr1 153553821 153553992 -43641440 - B3A SINE B2 -12 186 2 1 1756 192 152 0 0 chr1 153555160 153555193 -43640239 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1756 343 358 32 19 chr1 153556434 153556588 -43638844 - MER58B DNA MER1_type -3 338 183 1 1756 315 0 0 0 chr1 153556618 153556653 -43638779 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1756 1420 68 17 0 chr1 153557283 153557460 -43637972 + B2_Mm2 SINE B2 2 181 -14 1 1756 243 0 0 0 chr1 153558016 153558043 -43637389 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1756 297 271 34 86 chr1 153558409 153558526 -43636906 - B4A SINE B4 -75 217 107 1 1756 184 250 112 20 chr1 153559313 153559411 -43636021 - MIR3 SINE MIR -30 178 72 1 1756 2462 154 89 8 chr1 153559602 153560085 -43635347 - RLTR11A LTR ERVK 0 528 7 1 1756 272 269 83 37 chr1 153560431 153560539 -43634893 + L1M5 LINE L1 5590 5702 -460 1 1756 925 138 115 60 chr1 153560554 153560754 -43634678 - ORR1C2 LTR MaLR 0 384 174 1 1756 189 171 0 0 chr1 153560754 153560789 -43634643 + GA-rich Low_complexity Low_complexity 3 37 0 1 1756 204 40 0 0 chr1 153560789 153560814 -43634618 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1 1756 319 100 33 16 chr1 153560819 153560880 -43634552 + (GGGAGA)n Simple_repeat Simple_repeat 4 65 0 1 1756 1019 139 20 51 chr1 153560880 153561077 -43634355 - ORR1C2 LTR MaLR -190 194 4 1 1756 236 275 29 0 chr1 153561097 153561166 -43634266 + L1MD LINE L1 5763 5833 -2162 1 1756 33 0 0 0 chr1 153561322 153561355 -43634077 + AT_rich Low_complexity Low_complexity 1 33 0 1 1756 1008 141 51 34 chr1 153561448 153561624 -43633808 + B2_Mm2 SINE B2 3 181 -14 1 1756 746 259 321 29 chr1 153562149 153562424 -43633008 - L1MA5 LINE L1 -362 5938 5549 1 1756 194 0 39 0 chr1 153562424 153562450 -43632982 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1756 1117 72 0 0 chr1 153562450 153562588 -43632844 - B1_Mus2 SINE Alu -9 138 1 1 1756 746 219 77 54 chr1 153562588 153562745 -43632687 - L1MA5 LINE L1 -736 5576 5412 1 1756 239 333 61 0 chr1 153564037 153564136 -43631296 + L2c LINE L2 3283 3387 0 1 1756 947 129 8 15 chr1 153569697 153569964 -43625468 + CT-rich Low_complexity Low_complexity 1 264 0 1 1756 315 247 124 0 chr1 153570917 153571014 -43624418 + PB1 SINE Alu 1 109 -18 1 1756 337 257 9 87 chr1 153571069 153571184 -43624248 + ID_B1 SINE B4 119 224 0 1 1756 803 235 63 24 chr1 153571243 153571448 -43623984 - B3 SINE B2 0 216 4 1 1756 1331 63 29 0 chr1 153571547 153571721 -43623711 + B2_Mm1t SINE B2 1 179 -14 1 1756 555 132 215 0 chr1 153571933 153572054 -43623378 - URR1A DNA MER1_type 0 226 80 1 1756 1168 22 0 0 chr1 153572186 153572320 -43623112 + B1_Mus2 SINE Alu 3 136 -11 1 1756 215 226 0 0 chr1 153572462 153572515 -43622917 - ID4_ SINE ID -29 54 2 1 1756 2907 121 79 13 chr1 153572723 153573244 -43622188 - RMER4B LTR ERVK 0 585 31 1 1756 1813 91 65 61 chr1 153573244 153573537 -43621895 - L1_Mus2 LINE L1 -7 6559 6266 1 1756 303 48 0 0 chr1 153573537 153573579 -43621853 - RMER4B LTR ERVK -543 42 1 1 1756 225 182 0 0 chr1 153573931 153573986 -43621446 + C-rich Low_complexity Low_complexity 2 56 0 1 1756 585 76 0 0 chr1 153574034 153574113 -43621319 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 1 1756 372 94 0 0 chr1 153574262 153574315 -43621117 + (TCC)n Simple_repeat Simple_repeat 2 54 0 1 1756 21 36 0 0 chr1 153574402 153574430 -43621002 + AT_rich Low_complexity Low_complexity 1 28 0 1 1756 839 238 98 34 chr1 153574611 153574846 -43620586 - B4 SINE B4 -2 290 41 1 1756 302 276 0 0 chr1 153576076 153576152 -43619280 - ID4_ SINE ID -6 77 2 1 1756 232 284 111 0 chr1 153576152 153576233 -43619199 - PB1D9 SINE Alu -2 118 29 1 1756 823 323 46 18 chr1 153576341 153576735 -43618697 + L1ME1 LINE L1 5523 5927 -252 1 1756 227 326 10 92 chr1 153576748 153576846 -43618586 + MTEa LTR MaLR 3 92 -287 1 1756 767 126 74 0 chr1 153576899 153577034 -43618398 - B1_Mur4 SINE Alu 0 150 6 1 1756 1247 219 95 32 chr1 153577320 153577607 -43617825 - ORR1D2 LTR MaLR 0 370 65 1 1756 4023 88 54 4 chr1 153577607 153578163 -43617269 + MT2B2 LTR ERVL 1 584 0 1 1756 1247 219 95 32 chr1 153578163 153578223 -43617209 - ORR1D2 LTR MaLR -306 64 2 1 1756 433 292 30 98 chr1 153578223 153578458 -43616974 + L1ME1 LINE L1 5949 6167 -12 1 1756 683 204 8 15 chr1 153578459 153578593 -43616839 - B1_Mur4 SINE Alu 0 150 18 1 1756 21 0 0 0 chr1 153578608 153578629 -43616803 + AT_rich Low_complexity Low_complexity 1 21 0 1 1756 286 93 23 0 chr1 153578664 153578707 -43616725 - Lx8 LINE L1 -10 7463 7420 1 1756 705 270 30 23 chr1 153578798 153579060 -43616372 + RLTR15 LTR ERVK 2 265 -94 1 1756 369 270 81 0 chr1 153579124 153579235 -43616197 - Lx8 LINE L1 -202 7271 7152 1 1756 1791 79 92 46 chr1 153580532 153580837 -43614595 + ORR1A2 LTR MaLR 1 319 -8 1 1756 22 0 0 0 chr1 153580887 153580909 -43614523 + AT_rich Low_complexity Low_complexity 1 22 0 1 1756 787 291 6 0 chr1 153581055 153581237 -43614195 + B3 SINE B2 2 184 -32 1 1756 315 0 0 0 chr1 153581242 153581277 -43614155 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1756 288 0 0 0 chr1 153581277 153581308 -43614124 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1756 1666 126 12 159 chr1 153581545 153581960 -43613472 + ORR1B1 LTR MaLR 41 394 0 1 1756 299 255 118 78 chr1 153582018 153582171 -43613261 - RLTR42-int LTR ERVK -4131 1391 1233 1 1756 277 226 0 16 chr1 153582326 153582389 -43613043 + ID4 SINE ID 20 81 -2 1 1756 1131 281 91 13 chr1 153582472 153582531 -43612901 + Lx8 LINE L1 6987 7047 -426 1 1756 3508 31 43 12 chr1 153582531 153582954 -43612478 - RLTR10C LTR ERVK 0 436 1 1 1756 1131 281 91 13 chr1 153582954 153583290 -43612142 + Lx8 LINE L1 7048 7413 -60 1 1756 348 308 0 15 chr1 153583286 153583421 -43612011 + Lx8 LINE L1 7338 7470 -3 1 1756 508 271 6 49 chr1 153584791 153584954 -43610478 + RSINE1 SINE B4 3 158 -7 1 1756 2400 184 109 13 chr1 153585288 153585821 -43609611 - RMER1C Other Other 0 1342 759 1 1756 539 167 50 0 chr1 153585875 153586005 -43609427 - B1_Mur3 SINE Alu -1 149 3 1 1756 1298 97 43 0 chr1 153586020 153586205 -43609227 - B2_Mm2 SINE B2 -1 194 2 1 1756 271 316 40 0 chr1 153586240 153586316 -43609116 + MLT1D LTR MaLR 77 155 -350 1 1756 2418 126 3 6 chr1 153587236 153587596 -43607836 - RLTR15 LTR ERVK 0 359 1 1 1756 593 267 46 20 chr1 153587913 153588066 -43607366 - RSINE1 SINE B4 -7 158 2 1 1756 1076 312 9 24 chr1 153589625 153589954 -43605478 + MTE2a LTR MaLR 56 379 0 1 1756 3516 18 5 0 chr1 153589955 153590349 -43605083 - MTA_Mm LTR MaLR 0 396 1 1 1756 9097 30 20 1 chr1 153590349 153591426 -43604006 - MTA_Mm-int LTR MaLR 0 1098 1 1 1756 3634 2 5 0 chr1 153591426 153591820 -43603612 - MTA_Mm LTR MaLR 0 396 1 1 1756 740 118 8 38 chr1 153591860 153591992 -43603440 - B1_Mur4 SINE Alu -22 128 1 1 1756 5320 164 48 51 chr1 153592171 153593196 -43602236 + Lx7 LINE L1 6406 7427 -269 1 1756 645 275 56 0 chr1 153594125 153594285 -43601147 - B3 SINE B2 -9 207 39 1 1756 274 43 42 21 chr1 153594314 153594362 -43601070 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1756 690 214 7 20 chr1 153594861 153595009 -43600423 - B1F2 SINE Alu -3 146 1 1 1756 342 0 0 0 chr1 153595494 153595532 -43599900 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1756 235 328 50 50 chr1 153595859 153596000 -43599432 + LTR82A LTR ERVL 712 852 -20 1 1756 2116 158 36 107 chr1 153596000 153596327 -43599105 - MTD LTR MaLR 0 419 118 1 1756 921 148 21 0 chr1 153596327 153596469 -43598963 + B1_Mur3 SINE Alu 5 149 0 1 1756 2116 158 36 107 chr1 153596469 153596589 -43598843 - MTD LTR MaLR -302 117 4 1 1756 1747 99 86 30 chr1 153597131 153597433 -43597999 + ORR1A2 LTR MaLR 1 319 -8 1 1756 1006 200 22 0 chr1 153597651 153597836 -43597596 + B3 SINE B2 1 189 -27 1 1756 202 154 0 25 chr1 153600056 153600096 -43595336 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1756 194 178 22 22 chr1 153600405 153600451 -43594981 - MIRc SINE MIR -101 167 122 1 1756 198 0 0 0 chr1 153601891 153601913 -43593519 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 1756 251 266 119 15 chr1 153604185 153604302 -43591130 - MIRb SINE MIR -66 196 73 1 1756 279 289 0 0 chr1 153604511 153604594 -43590838 + C-rich Low_complexity Low_complexity 1 83 0 1 1756 1341 71 27 16 chr1 153605320 153605506 -43589926 - B2_Mm2 SINE B2 -7 188 1 1 1756 704 211 35 0 chr1 153605534 153605676 -43589756 - RSINE1 SINE B4 -11 154 8 1 1756 460 257 129 17 chr1 153607763 153607941 -43587491 - B3A SINE B2 0 198 1 1 1756 1064 254 42 14 chr1 153608392 153608675 -43586757 - B4A SINE B4 0 292 2 1 1756 22 0 0 0 chr1 153609011 153609033 -43586399 + AT_rich Low_complexity Low_complexity 1 22 0 1 1756 565 273 53 0 chr1 153609757 153609889 -43585543 + B1F2 SINE Alu 1 139 -10 1 1756 908 66 80 14 chr1 153609889 153610026 -43585406 + B1_Mus1 SINE Alu 1 147 -1 1 1756 217 170 0 19 chr1 153610027 153610081 -43585351 + A-rich Low_complexity Low_complexity 1 53 0 1 1756 311 198 226 24 chr1 153610824 153610948 -43584484 - B1F1 SINE Alu 0 149 1 1 1756 904 227 46 9 chr1 153611131 153611349 -43584083 + URR1A DNA MER1_type 1 226 0 1 1756 799 296 105 26 chr1 153611452 153612112 -43583320 - L1M4 LINE L1 -551 5628 4910 1 1756 1046 129 11 0 chr1 153612174 153612455 -43582977 + (TG)n Simple_repeat Simple_repeat 1 284 0 1 1756 432 310 45 38 chr1 153612479 153612744 -43582688 - L1M4 LINE L1 -1323 4823 4557 1 1756 376 298 8 50 chr1 153612758 153612878 -43582554 - PB1D10 SINE Alu 0 117 3 1 1756 441 297 10 0 chr1 153612778 153612879 -43582553 - ID_B1 SINE B4 -40 184 83 1 1756 760 178 27 27 chr1 153612924 153613074 -43582358 - B1_Mur4 SINE Alu 0 150 1 2 1756 21 89 0 0 chr1 153613871 153613927 -43581505 + AT_rich Low_complexity Low_complexity 1 56 0 2 1756 24 0 0 0 chr1 153614037 153614061 -43581371 + AT_rich Low_complexity Low_complexity 1 24 0 2 1756 721 265 42 6 chr1 153614253 153614420 -43581012 - B3 SINE B2 -6 210 38 2 1756 1398 226 141 0 chr1 153614425 153614788 -43580644 - MTD LTR MaLR -5 414 1 2 1756 488 300 140 43 chr1 153614857 153615272 -43580160 - HAL1b LINE L1 -568 1441 987 2 1756 257 250 53 0 chr1 153615653 153615729 -43579703 - Tigger6b DNA MER2_type -464 1133 1054 2 1756 333 235 0 0 chr1 153615860 153615945 -43579487 + (TATATG)n Simple_repeat Simple_repeat 1 85 0 2 1757 340 366 112 5 chr1 153616488 153616702 -43578730 + MIRb SINE MIR 27 263 -5 2 1757 1848 181 20 26 chr1 153616773 153617114 -43578318 - ORR1D1 LTR MaLR -35 339 1 2 1757 285 185 0 69 chr1 153617202 153617260 -43578172 + ID4 SINE ID 9 62 -21 2 1757 236 311 144 45 chr1 153617363 153617474 -43577958 + B4A SINE B4 52 173 -119 2 1757 430 262 78 0 chr1 153617397 153617500 -43577932 + PB1D7 SINE Alu 5 115 -5 2 1757 800 153 88 0 chr1 153617640 153617777 -43577655 - B1_Mur4 SINE Alu 0 150 2 2 1757 249 274 0 0 chr1 153618198 153618249 -43577183 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1757 1266 34 0 0 chr1 153618715 153618861 -43576571 - B1_Mus2 SINE Alu 0 147 2 2 1757 219 69 0 0 chr1 153619296 153619325 -43576107 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1757 1234 48 0 0 chr1 153619325 153619472 -43575960 - B1_Mus1 SINE Alu 0 148 2 2 1757 355 289 47 28 chr1 153620296 153620374 -43575058 + MER5A DNA MER1_type 1 77 -112 2 1757 497 265 78 13 chr1 153620374 153620527 -43574905 + RSINE1 SINE B4 3 165 0 2 1757 355 289 47 28 chr1 153620527 153620555 -43574877 + MER5A DNA MER1_type 78 109 -80 2 1757 21 0 0 0 chr1 153620918 153620939 -43574493 + AT_rich Low_complexity Low_complexity 1 21 0 2 1757 262 281 99 22 chr1 153621802 153621893 -43573539 - MIRb SINE MIR -37 231 134 2 1757 467 248 120 0 chr1 153622129 153622262 -43573170 - RSINE1 SINE B4 0 165 17 2 1757 309 89 0 0 chr1 153622390 153622435 -43572997 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1757 818 264 19 9 chr1 153623204 153623414 -43572018 + B3 SINE B2 1 212 -4 2 1757 280 328 112 0 chr1 153623453 153623569 -43571863 + B1F SINE Alu 3 131 -18 2 1757 444 264 47 16 chr1 153624196 153624323 -43571109 - RSINE1 SINE B4 -33 132 2 2 1757 1206 193 133 22 chr1 153625699 153626022 -43569410 - ORR1D1 LTR MaLR -15 359 1 2 1757 26 0 0 0 chr1 153626090 153626116 -43569316 + AT_rich Low_complexity Low_complexity 1 26 0 2 1757 225 387 64 11 chr1 153626437 153626625 -43568807 - B4A SINE B4 0 292 95 2 1757 225 256 214 34 chr1 153626715 153626893 -43568539 - L1M5 LINE L1 -438 5686 5477 2 1757 23 68 0 0 chr1 153627047 153627091 -43568341 + AT_rich Low_complexity Low_complexity 1 44 0 2 1757 843 204 111 0 chr1 153627091 153627272 -43568160 - B3 SINE B2 -12 204 4 2 1757 390 21 0 0 chr1 153627281 153627328 -43568104 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1757 275 279 565 11 chr1 153627330 153627507 -43567925 - Lx8 LINE L1 -146 7327 7053 2 1757 1028 297 70 27 chr1 153627849 153628323 -43567109 - Lx9 LINE L1 -294 7350 6857 2 1757 1120 149 86 5 chr1 153628525 153628734 -43566698 + URR1A DNA MER1_type 1 226 0 2 1757 368 266 164 0 chr1 153628834 153628962 -43566470 + RSINE1 SINE B4 2 150 -15 2 1757 219 88 0 0 chr1 153630986 153631020 -43564412 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1757 367 243 222 0 chr1 153632314 153632458 -43562974 + MIR SINE MIR 21 196 -66 2 1757 555 128 29 11 chr1 153632464 153632597 -43562835 + B1_Mus2 SINE Alu 1 99 -28 2 1757 22 35 0 0 chr1 153632715 153632744 -43562688 + AT_rich Low_complexity Low_complexity 1 29 0 2 1757 702 263 51 27 chr1 153632991 153633284 -43562148 - Lx7 LINE L1 -1574 6122 5823 2 1757 21 0 0 0 chr1 153633306 153633327 -43562105 + AT_rich Low_complexity Low_complexity 1 21 0 2 1757 22 35 0 0 chr1 153634056 153634085 -43561347 + AT_rich Low_complexity Low_complexity 1 29 0 2 1757 361 337 82 26 chr1 153634933 153635201 -43560231 - L1MC4 LINE L1 -484 5824 5542 2 1757 207 194 13 65 chr1 153635217 153635294 -43560138 + A-rich Low_complexity Low_complexity 2 74 0 2 1757 241 330 42 0 chr1 153635781 153635899 -43559533 - L1MC4 LINE L1 -3384 2830 2708 2 1757 1223 183 161 58 chr1 153636149 153636491 -43558941 - ORR1C1 LTR MaLR -1 377 1 2 1757 265 281 36 0 chr1 153636534 153636676 -43558756 - L1M2 LINE L1 -409 5780 5632 2 1757 341 232 53 9 chr1 153638460 153638573 -43556859 + MER2 DNA MER2_type 124 241 -104 2 1757 343 310 78 65 chr1 153638668 153638868 -43556564 - L1MC4 LINE L1 -876 1699 1460 2 1757 1223 35 0 0 chr1 153639216 153639357 -43556075 + B1_Mus2 SINE Alu 1 141 -6 2 1757 1047 205 28 19 chr1 153640374 153640588 -43554844 + B3 SINE B2 1 216 0 2 1757 1027 262 40 20 chr1 153641058 153641311 -43554121 - B4A SINE B4 -3 289 32 2 1757 276 261 41 0 chr1 153641364 153641451 -43553981 - PB1D10 SINE Alu -16 101 12 2 1757 378 0 0 0 chr1 153641478 153641520 -43553912 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1757 218 279 0 0 chr1 153641574 153641617 -43553815 - ID4 SINE ID -32 51 9 2 1757 234 128 0 0 chr1 153642216 153642255 -43553177 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1757 225 308 100 0 chr1 153642441 153642561 -43552871 + L1MA8 LINE L1 6125 6256 -35 2 1757 815 237 102 0 chr1 153642748 153642934 -43552498 + B4 SINE B4 2 206 -86 2 1757 183 352 0 32 chr1 153643760 153643854 -43551578 + MIRm SINE MIR 185 275 -1 2 1757 1202 90 50 17 chr1 153644702 153644882 -43550550 + B2_Mm2 SINE B2 3 188 -7 2 1757 323 277 88 41 chr1 153645409 153645556 -43549876 - MIR SINE MIR -21 241 88 2 1757 213 332 95 54 chr1 153645625 153645814 -43549618 - L2b LINE L2 -8 3379 3182 2 1757 318 288 24 24 chr1 153645980 153646062 -43549370 + BC1_Mm scRNA scRNA 2 83 -69 2 1757 210 136 0 0 chr1 153646088 153646132 -43549300 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1757 252 369 40 35 chr1 153646250 153646424 -43549008 - L3 LINE CR1 -608 3881 3707 2 1757 183 42 0 0 chr1 153646669 153646693 -43548739 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1757 685 265 106 4 chr1 153647133 153647387 -43548045 + B4A SINE B4 9 288 -4 2 1757 782 171 57 62 chr1 153650840 153651033 -43544399 + B2_Mm2 SINE B2 1 192 -3 2 1757 697 147 92 42 chr1 153651037 153651179 -43544253 + B1_Mur4 SINE Alu 1 149 -1 2 1757 1016 203 19 15 chr1 153652487 153652692 -43542740 + B3 SINE B2 2 207 -9 2 1757 194 303 120 10 chr1 153653401 153653501 -43541931 - L3 LINE CR1 -794 3695 3585 2 1757 213 296 83 14 chr1 153654762 153654834 -43540598 + ID4_ SINE ID 1 77 -6 2 1757 771 227 134 10 chr1 153654894 153655103 -43540329 + B4A SINE B4 3 237 -55 2 1757 405 0 0 0 chr1 153655130 153655175 -43540257 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1757 621 0 0 0 chr1 153655175 153655244 -43540188 + (GGGA)n Simple_repeat Simple_repeat 1 69 0 2 1757 233 322 85 11 chr1 153656545 153656639 -43538793 + Cheshire DNA MER1_type 184 284 -2136 2 1757 781 318 54 11 chr1 153656704 153656984 -43538448 - B4A SINE B4 0 292 1 2 1757 1492 52 15 25 chr1 153657227 153657423 -43538009 + B2_Mm2 SINE B2 2 195 0 2 1757 28 61 0 0 chr1 153657594 153657643 -43537789 + AT_rich Low_complexity Low_complexity 1 49 0 2 1757 237 152 33 17 chr1 153658965 153659025 -43536407 + (TTA)n Simple_repeat Simple_repeat 3 63 0 2 1757 43 81 0 0 chr1 153659025 153659124 -43536308 + AT_rich Low_complexity Low_complexity 1 99 0 2 1757 226 272 12 12 chr1 153659957 153660039 -43535393 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1757 21 36 0 0 chr1 153661331 153661359 -43534073 + AT_rich Low_complexity Low_complexity 1 28 0 2 1757 189 0 0 0 chr1 153661459 153661480 -43533952 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1757 1116 70 0 0 chr1 153661480 153661623 -43533809 - B1_Mus2 SINE Alu 0 147 5 2 1757 306 0 0 0 chr1 153661750 153661784 -43533648 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1757 378 39 78 0 chr1 153662968 153663019 -43532413 - ORR1B2 LTR MaLR 0 378 324 2 1757 351 40 0 0 chr1 153663022 153663072 -43532360 - B1_Mus2 SINE Alu 0 147 98 2 1757 1672 136 118 19 chr1 153663039 153663362 -43532070 - ORR1B2 LTR MaLR -10 357 3 2 1757 965 230 116 43 chr1 153663819 153664164 -43531268 - ORR1D2 LTR MaLR 0 370 1 2 1757 199 325 12 61 chr1 153664481 153664563 -43530869 + L2c LINE L2 3270 3347 -40 2 1757 450 65 0 0 chr1 153664994 153665056 -43530376 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1757 271 235 0 0 chr1 153665072 153665123 -43530309 - B3 SINE B2 -86 130 80 2 1757 21 0 0 0 chr1 153668034 153668055 -43527377 + AT_rich Low_complexity Low_complexity 1 21 0 2 1757 458 236 188 0 chr1 153669471 153669636 -43525796 - ORR1D2 LTR MaLR -4 370 175 2 1757 459 175 12 0 chr1 153669653 153669733 -43525699 - ORR1D2 LTR MaLR -265 105 25 2 1757 225 0 0 0 chr1 153670895 153670920 -43524512 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1757 243 0 0 0 chr1 153670920 153670946 -43524486 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1757 1067 56 0 0 chr1 153670965 153671108 -43524324 - B1_Mus1 SINE Alu 0 148 6 2 1757 408 210 22 108 chr1 153671010 153671149 -43524283 - MT2B LTR ERVL -344 257 131 2 1757 221 300 25 0 chr1 153673213 153673293 -43522139 - L2 LINE L2 -527 2892 2811 2 1757 4913 138 74 12 chr1 153673340 153674195 -43521237 - RMER13B LTR ERVK 0 908 1 3 1757 225 108 0 0 chr1 153674213 153674250 -43521182 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1757 184 246 90 30 chr1 153674289 153674356 -43521076 - L2a LINE L2 -23 3403 3333 3 1757 288 0 0 0 chr1 153674365 153674397 -43521035 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 3 1757 369 273 0 0 chr1 153674661 153674760 -43520672 - Tigger7 DNA MER2_type -2190 301 203 3 1757 359 88 0 29 chr1 153674813 153674883 -43520549 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 3 1757 711 115 18 0 chr1 153674883 153674996 -43520436 - RMER1B Other Other -9 1057 943 3 1757 270 0 0 0 chr1 153676057 153676087 -43519345 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 3 1757 186 301 0 0 chr1 153677487 153677570 -43517862 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1757 202 170 0 36 chr1 153677951 153678006 -43517426 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 1757 7034 82 46 4 chr1 153678008 153678951 -43516481 - RLTR13C1 LTR ERVK 0 983 2 3 1757 333 0 0 0 chr1 153678951 153678988 -43516444 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1757 275 250 73 0 chr1 153679008 153679076 -43516356 - Lx7 LINE L1 -358 7338 7266 3 1757 945 251 9 14 chr1 153679077 153679295 -43516137 - B4A SINE B4 -74 218 2 3 1757 207 300 191 7 chr1 153679589 153679730 -43515702 + MIR SINE MIR 12 178 -84 3 1757 226 303 15 0 chr1 153681244 153681310 -43514122 - B4A SINE B4 -4 288 222 3 1757 505 76 12 12 chr1 153681317 153681397 -43514035 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 1757 1218 271 70 74 chr1 153681490 153681883 -43513549 - Lx7 LINE L1 -312 7384 7006 3 1757 314 0 49 0 chr1 153681883 153681924 -43513508 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1757 1099 90 0 7 chr1 153681924 153682070 -43513362 - B1_Mus1 SINE Alu -2 146 2 3 1757 1218 271 70 74 chr1 153682070 153682162 -43513270 - Lx7 LINE L1 -691 7005 6901 3 1757 385 297 64 67 chr1 153682169 153682410 -43513022 - B4 SINE B4 -60 232 1 3 1757 349 314 37 135 chr1 153682718 153683119 -43512313 - L1M4 LINE L1 -1371 4775 4414 3 1757 236 227 52 83 chr1 153683775 153683871 -43511561 - B1F2 SINE Alu -35 113 21 3 1757 434 311 40 35 chr1 153683982 153684067 -43511365 - L1MC LINE L1 -2111 4035 3953 3 1757 2893 84 0 15 chr1 153684067 153684466 -43510966 - L1_Mus1 LINE L1 0 6567 6175 3 1757 434 311 40 35 chr1 153684466 153684607 -43510825 - L1MC LINE L1 -2194 3952 3808 3 1757 704 245 73 16 chr1 153684657 153684848 -43510584 + B3 SINE B2 2 203 -13 3 1757 228 293 12 0 chr1 153685041 153685123 -43510309 - L1M4 LINE L1 -2769 3377 3295 3 1757 329 0 24 0 chr1 153685134 153685175 -43510257 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 1757 535 226 0 0 chr1 153685819 153685921 -43509511 - Lx8 LINE L1 -587 6886 6785 3 1757 273 196 0 0 chr1 153685938 153685994 -43509438 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1757 326 327 33 20 chr1 153685997 153686150 -43509282 - L1M2 LINE L1 -803 5340 5186 3 1757 890 295 26 45 chr1 153686285 153686793 -43508639 + L1MA7 LINE L1 5796 6283 -8 3 1757 207 0 0 0 chr1 153686824 153686847 -43508585 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1757 2392 95 6 3 chr1 153686954 153687280 -43508152 - ORR1A2 LTR MaLR 0 327 1 3 1757 1148 34 41 7 chr1 153687564 153687857 -43507575 + (TCTA)n Simple_repeat Simple_repeat 1 303 0 3 1757 468 173 125 0 chr1 153690186 153690290 -43505142 + RMER6D LTR ERVK 363 479 -241 3 1757 1673 189 42 3 chr1 153690315 153690670 -43504762 - RMER6D LTR ERVK -351 369 1 3 1757 413 214 68 137 chr1 153691152 153691298 -43504134 + B1_Mur1 SINE Alu 9 144 -5 3 1757 724 143 90 0 chr1 153691645 153691778 -43503654 - ORR1B1 LTR MaLR -8 386 242 3 1757 493 231 0 46 chr1 153692094 153692203 -43503229 + PB1D10 SINE Alu 2 105 -12 3 1757 363 60 0 0 chr1 153694292 153694342 -43501090 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1757 24 0 0 0 chr1 153694364 153694388 -43501044 + AT_rich Low_complexity Low_complexity 1 24 0 3 1757 609 246 58 0 chr1 153694718 153694889 -43500543 - MER2 DNA MER2_type -58 287 107 3 1757 508 268 18 0 chr1 153694951 153695063 -43500369 + RSINE1 SINE B4 35 148 -17 3 1757 707 278 57 97 chr1 153695108 153695357 -43500075 + B4A SINE B4 2 251 -41 3 1757 969 231 35 0 chr1 153695357 153695560 -43499872 + B3 SINE B2 3 212 -4 3 1757 707 278 57 97 chr1 153695560 153695609 -43499823 + B4A SINE B4 252 288 -4 3 1757 2101 124 31 9 chr1 153695628 153695946 -43499486 + ORR1A4 LTR MaLR 1 325 -4 3 1757 573 215 164 28 chr1 153696182 153696359 -43499073 + B3 SINE B2 4 204 -12 3 1757 3202 199 67 44 chr1 153696535 153697413 -43498019 + RMER13B LTR ERVK 1 898 -10 3 1757 279 313 0 88 chr1 153697541 153697688 -43497744 + MER63A DNA AcHobo 6 139 -71 3 1757 450 0 0 0 chr1 153699095 153699145 -43496287 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1757 638 91 10 0 chr1 153700695 153700794 -43494638 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1757 353 22 22 0 chr1 153700858 153700904 -43494528 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 3 1757 333 232 37 0 chr1 153700904 153700986 -43494446 + B3 SINE B2 132 216 0 3 1757 610 174 91 0 chr1 153701892 153702024 -43493408 + ORR1D1 LTR MaLR 1 144 -230 3 1757 546 56 0 0 chr1 153702014 153702085 -43493347 - U4 snRNA snRNA -74 71 1 3 1757 229 121 0 0 chr1 153702090 153702123 -43493309 + ORR1D1 LTR MaLR 132 164 -210 3 1757 483 118 0 0 chr1 153702138 153702214 -43493218 + (CCCCCT)n Simple_repeat Simple_repeat 6 81 0 3 1757 1027 161 35 20 chr1 153702217 153702420 -43493012 + ORR1D1 LTR MaLR 169 374 0 3 1757 279 0 0 0 chr1 153702554 153702585 -43492847 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1757 809 215 105 0 chr1 153703214 153703405 -43492027 + B3 SINE B2 2 212 -4 3 1757 295 332 116 9 chr1 153703704 153703920 -43491512 + Tigger10 DNA Tigger 480 718 -1125 3 1757 423 176 0 13 chr1 153704347 153704422 -43491010 - PB1D10 SINE Alu -2 115 42 3 1757 237 263 53 0 chr1 153704371 153704428 -43491004 - 4.5SRNA scRNA scRNA -4 90 31 3 1757 238 319 161 26 chr1 153705205 153705398 -43490034 - MIRb SINE MIR -34 234 16 3 1757 972 30 30 0 chr1 153705558 153705693 -43489739 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 3 1757 597 259 106 31 chr1 153705697 153705924 -43489508 - B4 SINE B4 0 292 49 3 1757 1011 133 38 16 chr1 153706108 153706292 -43489140 - URR1A DNA MER1_type -2 224 37 3 1757 699 196 0 0 chr1 153706507 153706650 -43488782 + (TA)n Simple_repeat Simple_repeat 2 144 0 3 1757 597 276 36 36 chr1 153706650 153706875 -43488557 - MT2A LTR ERVL -40 493 269 3 1757 424 257 0 9 chr1 153706880 153706986 -43488446 + PB1D10 SINE Alu 5 109 -8 3 1757 315 288 0 0 chr1 153707003 153707076 -43488356 + ID4 SINE ID 1 73 -10 3 1757 1039 260 91 16 chr1 153708381 153708701 -43486731 - ORR1D2 LTR MaLR 0 370 27 3 1757 967 232 30 0 chr1 153709758 153709956 -43485476 + B3 SINE B2 4 207 -9 3 1757 384 22 0 0 chr1 153710052 153710097 -43485335 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1757 182 343 0 0 chr1 153710295 153710362 -43485070 - MIRm SINE MIR -99 177 111 3 1757 472 321 102 47 chr1 153710522 153711031 -43484401 + MLT1F1 LTR MaLR 1 560 -9 3 1757 254 238 302 30 chr1 153711297 153711466 -43483966 + B4A SINE B4 1 215 -77 3 1757 267 273 0 15 chr1 153711870 153711937 -43483495 + AluG_3 SINE Alu 154 219 -92 3 1757 347 276 35 0 chr1 153712014 153712130 -43483302 - L2a LINE L2 -42 3384 3265 3 1757 195 42 0 0 chr1 153712466 153712490 -43482942 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1757 4489 14 2 0 chr1 153713019 153713511 -43481921 + MT2_Mm LTR ERVL 1 493 0 3 1757 41403 16 14 0 chr1 153713511 153718798 -43476634 + MERVL-int LTR ERVL 1 5360 -125 3 1757 362 167 46 35 chr1 153718798 153718885 -43476547 + ORR1A3-int LTR MaLR 553 640 -1323 3 1757 321 0 0 0 chr1 153718885 153718923 -43476509 + MERVL-int LTR ERVL 5448 5485 0 3 1757 4475 16 2 0 chr1 153718923 153719415 -43476017 + MT2_Mm LTR ERVL 1 493 0 3 1757 254 304 200 0 chr1 153719671 153719806 -43475626 + RMER30 DNA MER1_type 16 177 -25 3 1757 257 216 0 11 chr1 153720064 153720153 -43475279 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1757 351 0 0 0 chr1 153720210 153720249 -43475183 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1757 958 34 52 14 chr1 153720394 153720605 -43474827 + (TG)n Simple_repeat Simple_repeat 1 218 0 3 1757 387 330 0 0 chr1 153720607 153720680 -43474752 - B4 SINE B4 0 292 220 3 1757 405 0 0 0 chr1 153720680 153720725 -43474707 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 1757 387 330 0 0 chr1 153720725 153720760 -43474672 - B4 SINE B4 -73 219 185 3 1757 331 299 35 7 chr1 153721346 153721491 -43473941 + MER20B DNA MER1_type 261 409 -374 3 1757 692 263 109 4 chr1 153721508 153721756 -43473676 + MTD LTR MaLR 146 419 0 3 1757 779 286 26 93 chr1 153721926 153722311 -43473121 + MTE2a LTR MaLR 19 377 -2 3 1757 232 27 54 0 chr1 153723276 153723313 -43472119 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1757 225 290 14 14 chr1 153723395 153723465 -43471967 + C-rich Low_complexity Low_complexity 1 70 0 3 1757 4933 56 7 0 chr1 153723848 153724455 -43470977 - L1Md_F2 LINE L1 -2 6580 5970 3 1757 1218 62 0 0 chr1 153724478 153724638 -43470794 + (TG)n Simple_repeat Simple_repeat 1 160 0 3 1757 348 323 0 100 chr1 153724645 153724755 -43470677 - PB1D7 SINE Alu -21 99 1 3 1757 510 299 167 3 chr1 153724967 153725303 -43470129 - L1ME1 LINE L1 -161 6409 6019 3 1757 476 276 8 31 chr1 153725329 153725456 -43469976 - B4A SINE B4 -165 127 4 3 1757 389 229 54 60 chr1 153725570 153725719 -43469713 + B1F1 SINE Alu 2 149 0 3 1757 395 239 0 11 chr1 153725722 153725811 -43469621 - L1ME1 LINE L1 -1242 5295 5208 3 1757 425 292 46 8 chr1 153727423 153727554 -43467878 + MIR SINE MIR 5 140 -122 3 1757 300 220 126 18 chr1 153727563 153727674 -43467758 - L1ME1 LINE L1 -4128 2505 2383 3 1757 254 61 41 0 chr1 153727679 153727728 -43467704 - Lx4A LINE L1 -1 7057 7007 3 1757 22 0 0 0 chr1 153729607 153729629 -43465803 + AT_rich Low_complexity Low_complexity 1 22 0 3 1757 201 94 0 0 chr1 153730379 153730411 -43465021 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1757 399 21 0 0 chr1 153730498 153730546 -43464886 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1757 232 204 0 0 chr1 153731271 153731315 -43464117 - MIR SINE MIR -148 114 71 4 1757 558 0 0 0 chr1 153733134 153733196 -43462236 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1757 414 0 0 0 chr1 153738999 153739045 -43456387 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1757 211 132 94 0 chr1 153740292 153740345 -43455087 + T-rich Low_complexity Low_complexity 4 61 0 4 1757 218 259 19 0 chr1 153740712 153740766 -43454666 + (CACG)n Simple_repeat Simple_repeat 3 57 0 4 1757 24 32 0 0 chr1 153741770 153741801 -43453631 + AT_rich Low_complexity Low_complexity 1 31 0 4 1757 362 333 38 8 chr1 153742088 153742221 -43453211 + MIRb SINE MIR 55 191 -77 4 1757 481 110 22 0 chr1 153743186 153743277 -43452155 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1757 859 182 15 0 chr1 153743365 153743502 -43451930 + B3 SINE B2 3 141 -75 4 1757 504 48 0 0 chr1 153743506 153743569 -43451863 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1757 198 321 0 0 chr1 153743798 153743851 -43451581 - MIRb SINE MIR -57 211 159 4 1757 371 295 0 26 chr1 153744545 153744660 -43450772 + PB1D10 SINE Alu 3 114 -3 4 1757 222 293 0 0 chr1 153744679 153744720 -43450712 + ID4_ SINE ID 7 47 -36 4 1757 1152 119 0 0 chr1 153744958 153745135 -43450297 + (TCC)n Simple_repeat Simple_repeat 2 178 0 4 1757 464 175 0 10 chr1 153745136 153745234 -43450198 + CT-rich Low_complexity Low_complexity 3 99 0 4 1757 273 146 0 0 chr1 153745252 153745300 -43450132 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 1757 204 40 0 0 chr1 153745482 153745507 -43449925 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1757 247 274 40 14 chr1 153745573 153745647 -43449785 + B4 SINE B4 16 91 -201 4 1757 724 310 81 22 chr1 153745657 153746073 -43449359 + B4A SINE B4 8 289 -3 4 1757 252 0 0 0 chr1 153746075 153746103 -43449329 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 4 1757 239 328 0 60 chr1 153746690 153746823 -43448609 + L1MB8 LINE L1 6050 6174 -4 4 1758 267 237 39 26 chr1 153747586 153747664 -43447768 - ID4_ SINE ID 0 83 5 4 1758 295 333 84 38 chr1 153748690 153748789 -43446643 - MER58B DNA MER1_type -8 333 230 4 1758 1268 156 59 45 chr1 153748789 153749011 -43446421 + URR1B DNA MER1_type 1 225 0 4 1758 295 333 84 38 chr1 153749011 153749029 -43446403 - MER58B DNA MER1_type -112 229 214 4 1758 514 211 39 0 chr1 153749029 153749133 -43446299 + PB1D10 SINE Alu 2 109 -8 4 1758 295 333 84 38 chr1 153749133 153749276 -43446156 - MER58B DNA MER1_type -128 213 61 4 1758 408 20 0 0 chr1 153750651 153750700 -43444732 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1758 212 258 167 0 chr1 153751188 153751254 -43444178 - ID4_ SINE ID -5 78 2 4 1758 23 92 0 0 chr1 153751324 153751389 -43444043 + AT_rich Low_complexity Low_complexity 1 65 0 4 1758 26 93 0 0 chr1 153751584 153751659 -43443773 + AT_rich Low_complexity Low_complexity 1 75 0 4 1758 336 48 0 0 chr1 153751822 153751864 -43443568 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1758 24 32 0 0 chr1 153751933 153751964 -43443468 + AT_rich Low_complexity Low_complexity 1 31 0 4 1758 230 236 83 0 chr1 153753059 153753131 -43442301 - MIRb SINE MIR -141 127 50 4 1758 245 261 0 44 chr1 153753459 153753527 -43441905 - ID4 SINE ID -17 66 2 4 1758 387 305 60 22 chr1 153753544 153753678 -43441754 - B1F1 SINE Alu -10 139 1 4 1758 573 15 0 0 chr1 153753802 153753868 -43441564 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1758 254 328 0 60 chr1 153754532 153754665 -43440767 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 1758 294 349 43 87 chr1 153754681 153754888 -43440544 - B3 SINE B2 -17 199 2 4 1758 23 0 0 0 chr1 153755300 153755323 -43440109 + AT_rich Low_complexity Low_complexity 1 23 0 4 1758 1207 75 0 0 chr1 153755323 153755470 -43439962 - B1_Mus1 SINE Alu 0 148 2 4 1758 870 46 0 0 chr1 153755506 153755614 -43439818 - B1_Mm SINE Alu 0 147 40 4 1758 313 158 114 38 chr1 153755549 153755628 -43439804 - RLTR25B LTR ERVK -519 509 425 4 1758 1316 221 75 21 chr1 153755972 153756305 -43439127 - ORR1E LTR MaLR -5 354 4 4 1758 756 246 0 0 chr1 153756638 153756776 -43438656 + B1F SINE Alu 1 138 -11 4 1758 708 285 93 4 chr1 153757155 153757412 -43438020 - B4A SINE B4 -2 290 2 4 1758 204 104 19 77 chr1 153758900 153758952 -43436480 + (CAAAC)n Simple_repeat Simple_repeat 4 52 0 4 1758 180 192 18 55 chr1 153759560 153759615 -43435817 + L3 LINE CR1 757 809 -3680 4 1758 3098 261 81 10 chr1 153759800 153760636 -43434796 + Lx8 LINE L1 6189 7084 -389 4 1758 1072 255 5 9 chr1 153760638 153760860 -43434572 + B4 SINE B4 26 246 -46 4 1758 939 109 0 0 chr1 153760911 153761076 -43434356 + (CA)n Simple_repeat Simple_repeat 1 165 0 4 1758 350 274 52 10 chr1 153761360 153761456 -43433976 - Tigger7 DNA MER2_type -8 2483 2384 4 1758 239 265 96 0 chr1 153761947 153762030 -43433402 - Tigger7 DNA MER2_type -102 2389 2299 4 1758 256 288 37 12 chr1 153762036 153762117 -43433315 - Tigger7 DNA MER2_type -2376 115 33 4 1758 22 0 0 0 chr1 153762440 153762462 -43432970 + GC_rich Low_complexity Low_complexity 1 22 0 4 1758 233 204 0 0 chr1 153763694 153763738 -43431694 - MIRc SINE MIR -29 239 196 4 1758 1024 118 147 0 chr1 153764477 153764647 -43430785 - B2_Mm2 SINE B2 0 195 1 4 1758 234 0 0 0 chr1 153765119 153765145 -43430287 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 4 1758 606 225 20 165 chr1 153766245 153766500 -43428932 - MT2A LTR ERVL -315 218 1 4 1758 195 42 0 0 chr1 153766745 153766769 -43428663 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1758 440 278 68 0 chr1 153766791 153766924 -43428508 - B1F SINE Alu -5 144 3 4 1758 221 122 0 75 chr1 153767135 153767188 -43428244 + T-rich Low_complexity Low_complexity 4 52 0 4 1758 551 297 114 48 chr1 153767283 153767661 -43427771 - L1ME3B LINE L1 -396 5844 5442 4 1758 23 0 0 0 chr1 153767741 153767764 -43427668 + AT_rich Low_complexity Low_complexity 1 23 0 4 1758 267 149 0 21 chr1 153768052 153768100 -43427332 - L1M5 LINE L1 -1377 4769 4723 4 1758 270 0 0 0 chr1 153768102 153768132 -43427300 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1758 415 280 95 8 chr1 153769336 153769462 -43425970 + RSINE1 SINE B4 4 140 -25 4 1758 228 286 48 0 chr1 153770204 153770288 -43425144 - MIR SINE MIR 0 262 175 4 1758 535 315 14 0 chr1 153770443 153770586 -43424846 - MIR SINE MIR -113 149 5 4 1758 1444 282 75 47 chr1 153770615 153771173 -43424259 - Charlie1a DNA MER1_type -662 793 220 4 1758 1352 288 71 15 chr1 153771572 153772128 -43423304 - L1MB8 LINE L1 -218 5960 5380 4 1758 356 169 0 101 chr1 153774679 153774758 -43420674 + B1_Mur1 SINE Alu 40 139 -10 4 1758 590 195 24 16 chr1 153774770 153774895 -43420537 - MTB_Mm LTR MaLR 0 407 282 4 1758 2359 25 7 0 chr1 153774904 153775184 -43420248 + MTA_Mm LTR MaLR 115 396 0 4 1758 231 36 0 0 chr1 153775225 153775253 -43420179 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1758 820 285 39 21 chr1 153778130 153778413 -43417019 - B4A SINE B4 -1 291 4 4 1758 523 244 53 0 chr1 153779115 153779246 -43416186 + ID_B1 SINE B4 72 209 -15 4 1758 328 206 29 0 chr1 153781268 153781336 -43414096 - MTEa LTR MaLR -15 364 295 4 1758 293 286 12 12 chr1 153781603 153781688 -43413744 - ORR1E LTR MaLR -274 85 1 4 1758 279 240 83 40 chr1 153782098 153782262 -43413170 + L1MB2 LINE L1 5893 6064 -107 4 1758 195 222 0 0 chr1 153782461 153782506 -43412926 + (CATA)n Simple_repeat Simple_repeat 4 48 0 4 1758 301 93 18 18 chr1 153782566 153782621 -43412811 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1758 21 71 0 0 chr1 153782688 153782730 -43412702 + AT_rich Low_complexity Low_complexity 1 42 0 4 1758 280 369 37 12 chr1 153783357 153783519 -43411913 - HAL1 LINE L1 -1844 663 498 4 1758 844 151 6 22 chr1 153783536 153783719 -43411713 + GA-rich Low_complexity Low_complexity 1 180 0 4 1758 468 0 0 0 chr1 153783770 153783822 -43411610 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1758 547 237 241 18 chr1 153783826 153784054 -43411378 - B4A SINE B4 -13 279 1 4 1758 206 262 189 15 chr1 153784298 153784430 -43411002 - MIRb SINE MIR -50 218 64 4 1758 205 27 53 26 chr1 153785211 153785249 -43410183 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1758 765 74 0 9 chr1 153785249 153785351 -43410081 - B1_Mm SINE Alu -11 136 35 4 1758 204 40 0 0 chr1 153788174 153788199 -43407233 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1758 423 280 106 53 chr1 153788244 153788508 -43406924 - B4 SINE B4 -14 278 1 4 1758 234 91 0 0 chr1 153789140 153789173 -43406259 + (TCC)n Simple_repeat Simple_repeat 1 33 0 4 1758 192 152 0 0 chr1 153789189 153789222 -43406210 + T-rich Low_complexity Low_complexity 1 33 0 4 1758 217 320 0 25 chr1 153789603 153789683 -43405749 - MIRm SINE MIR -101 175 98 4 1758 507 33 0 0 chr1 153791918 153791979 -43403453 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1758 249 33 0 0 chr1 153792417 153792447 -43402985 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1758 571 167 113 21 chr1 153792564 153792705 -43402727 - RMER5 LTR ERV1 -17 517 364 4 1758 842 175 124 5 chr1 153792715 153792916 -43402516 + RMER4B LTR ERVK 17 241 -344 4 1758 579 235 139 30 chr1 153792961 153793163 -43402269 + RMER4B LTR ERVK 342 565 -20 4 1758 794 173 14 7 chr1 153793219 153793359 -43402073 + B1_Mur2 SINE Alu 2 142 -7 4 1758 646 291 90 29 chr1 153793387 153793698 -43401734 - RMER5 LTR ERV1 -192 342 13 4 1758 207 0 0 0 chr1 153794454 153794477 -43400955 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1758 251 71 24 0 chr1 153795664 153795706 -43399726 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1758 536 214 25 25 chr1 153796808 153796928 -43398504 + RSINE1 SINE B4 3 122 -43 4 1758 474 266 224 39 chr1 153796954 153797538 -43397894 + L1MA9 LINE L1 5601 6291 0 4 1758 532 223 9 9 chr1 153798372 153798485 -43396947 - PB1D9 SINE Alu -7 113 1 5 1758 235 167 20 20 chr1 153798557 153798606 -43396826 + GA-rich Low_complexity Low_complexity 1 49 0 5 1758 417 39 0 0 chr1 153799625 153799676 -43395756 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1758 690 301 38 8 chr1 153799708 153799943 -43395489 - B4A SINE B4 -49 243 2 5 1758 257 340 69 86 chr1 153801449 153801681 -43393751 + MLT1F1 LTR MaLR 11 238 -310 5 1758 313 280 204 5 chr1 153801700 153801901 -43393531 + MLT1F1 LTR MaLR 329 569 0 5 1758 392 280 53 8 chr1 153801954 153802087 -43393345 + B1F2 SINE Alu 1 139 -10 5 1758 924 220 154 12 chr1 153802152 153802405 -43393027 - Lx2B LINE L1 -2 6998 6710 5 1758 332 146 0 0 chr1 153802550 153802598 -43392834 - L1_Mus3 LINE L1 -230 6408 6361 5 1758 697 60 0 0 chr1 153802593 153802676 -43392756 + L1_Mus3 LINE L1 6409 6491 -147 5 1758 822 69 20 27 chr1 153802848 153802997 -43392435 + L1_Mus3 LINE L1 6491 6638 0 5 1758 273 308 90 23 chr1 153804810 153804943 -43390489 - MLT1I LTR MaLR -98 313 172 5 1758 917 253 97 122 chr1 153805127 153805910 -43389522 + L1M3 LINE L1 3515 4269 -1871 5 1758 306 0 0 0 chr1 153805912 153805946 -43389486 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1758 542 305 60 14 chr1 153805964 153806239 -43389193 + L1M3 LINE L1 4753 5050 -1096 5 1758 954 269 337 4 chr1 153806379 153806856 -43388576 + Lx8 LINE L1 6836 7471 -2 5 1758 21 0 0 0 chr1 153807007 153807028 -43388404 + AT_rich Low_complexity Low_complexity 1 21 0 5 1758 762 214 29 40 chr1 153807154 153807329 -43388103 - MTEb LTR MaLR -193 186 14 5 1758 402 275 65 53 chr1 153807529 153807698 -43387734 + MLT1J LTR MaLR 233 403 -109 5 1758 224 77 0 25 chr1 153808803 153808843 -43386589 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1758 252 0 0 0 chr1 153809744 153809772 -43385660 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1758 1388 80 10 26 chr1 153810138 153810330 -43385102 + B2_Mm2 SINE B2 2 190 -5 5 1758 3046 29 0 3 chr1 153811489 153811836 -43383596 + ORR1A0 LTR MaLR 1 346 0 5 1758 314 207 0 22 chr1 153811939 153812028 -43383404 + GA-rich Low_complexity Low_complexity 4 90 0 5 1758 2814 180 58 15 chr1 153812029 153812565 -43382867 + RMER1A Other Other 389 947 -83 5 1758 186 43 0 0 chr1 153812582 153812605 -43382827 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 5 1758 267 270 188 14 chr1 153812839 153812977 -43382455 - MIRc SINE MIR -59 209 49 5 1758 285 274 0 0 chr1 153813100 153813162 -43382270 - ID4 SINE ID -11 72 11 5 1758 183 347 61 10 chr1 153813354 153813453 -43381979 - MIRb SINE MIR -163 105 2 5 1758 194 273 0 105 chr1 153813971 153814057 -43381375 + L2c LINE L2 3309 3385 -2 5 1758 245 313 12 0 chr1 153814267 153814350 -43381082 + L1M5 LINE L1 5582 5665 -459 5 1758 831 230 21 0 chr1 153814880 153815071 -43380361 + MTEa LTR MaLR 1 195 -184 5 1758 186 305 120 28 chr1 153815387 153815495 -43379937 - MIRb SINE MIR -38 230 113 5 1758 1142 208 14 0 chr1 153816428 153816640 -43378792 - B3 SINE B2 -1 215 1 5 1758 1497 147 5 0 chr1 153817520 153817744 -43377688 + URR1B DNA MER1_type 1 225 0 5 1758 867 285 65 4 chr1 153819194 153819469 -43375963 - L1MC3 LINE L1 -1902 5883 5592 5 1758 699 269 111 36 chr1 153822611 153822943 -43372489 + ORR1E LTR MaLR 1 357 -2 5 1758 331 279 142 47 chr1 153824211 153824422 -43371010 - L1MC3 LINE L1 -2246 5636 5406 5 1758 680 281 242 6 chr1 153824605 153824948 -43370484 - Tigger13a DNA MER2_type -231 540 117 5 1758 185 65 0 31 chr1 153828752 153828784 -43366648 + (TTA)n Simple_repeat Simple_repeat 2 32 0 5 1758 2724 127 0 5 chr1 153828784 153829180 -43366252 - Lx4A LINE L1 -5 7053 6660 5 1758 1124 242 47 32 chr1 153829419 153829697 -43365735 - B4A SINE B4 -3 289 8 5 1758 453 289 44 0 chr1 153829840 153829975 -43365457 + B1F SINE Alu 1 141 -8 5 1758 22 0 0 0 chr1 153830161 153830183 -43365249 + AT_rich Low_complexity Low_complexity 1 22 0 5 1758 188 111 0 27 chr1 153831703 153831740 -43363692 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1758 795 233 41 20 chr1 153831766 153831963 -43363469 - B3 SINE B2 -15 201 1 5 1758 180 0 0 0 chr1 153832489 153832509 -43362923 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1758 21 36 0 0 chr1 153832726 153832754 -43362678 + AT_rich Low_complexity Low_complexity 1 28 0 5 1758 399 229 0 0 chr1 153832890 153833100 -43362332 + (CA)n Simple_repeat Simple_repeat 1 210 0 5 1758 225 0 0 0 chr1 153834869 153834894 -43360538 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 5 1758 644 147 7 0 chr1 153835051 153835187 -43360245 + (TG)n Simple_repeat Simple_repeat 1 137 0 5 1758 576 273 0 0 chr1 153837282 153837414 -43358018 - B1_Mur1 SINE Alu -12 137 6 5 1758 558 290 80 19 chr1 153837482 153837746 -43357686 - L1MA6 LINE L1 -5 6295 6016 5 1758 720 266 37 5 chr1 153838790 153838979 -43356453 - B3A SINE B2 -3 195 1 5 1758 313 260 39 29 chr1 153839839 153839942 -43355490 - MLT1A0 LTR MaLR -257 108 5 5 1758 207 188 0 0 chr1 153840633 153840681 -43354751 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1758 659 280 39 7 chr1 153840714 153840921 -43354511 - B4A SINE B4 -4 288 52 5 1758 21 36 0 0 chr1 153841909 153841937 -43353495 + AT_rich Low_complexity Low_complexity 1 28 0 5 1758 22 56 0 0 chr1 153841956 153841992 -43353440 + AT_rich Low_complexity Low_complexity 1 36 0 5 1758 324 0 0 0 chr1 153842248 153842284 -43353148 + (CAA)n Simple_repeat Simple_repeat 1 36 0 5 1758 713 259 14 0 chr1 153842299 153842446 -43352986 + RSINE1 SINE B4 7 155 -10 5 1758 218 234 62 0 chr1 153842866 153842930 -43352502 + G-rich Low_complexity Low_complexity 6 73 0 5 1758 21 0 0 0 chr1 153843060 153843081 -43352351 + AT_rich Low_complexity Low_complexity 1 21 0 5 1758 221 221 144 44 chr1 153843281 153843371 -43352061 - B4A SINE B4 -112 180 82 5 1758 923 298 97 29 chr1 153843399 153843842 -43351590 - Lx8 LINE L1 0 7473 7001 5 1758 274 211 63 53 chr1 153843862 153843957 -43351475 - B4A SINE B4 -196 96 1 5 1758 530 255 67 54 chr1 153844031 153844180 -43351252 + RSINE1 SINE B4 3 153 -12 5 1758 789 137 0 0 chr1 153844464 153844697 -43350735 + (CA)n Simple_repeat Simple_repeat 1 233 0 5 1758 189 0 0 0 chr1 153844821 153844842 -43350590 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1758 352 253 47 73 chr1 153844915 153845130 -43350302 + ORR1E LTR MaLR 159 379 0 5 1758 1598 239 32 12 chr1 153845188 153845620 -43349812 + BGLII_B LTR ERVK 1 441 0 5 1758 277 264 0 43 chr1 153847252 153847438 -43347994 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 1758 321 26 0 0 chr1 153847480 153847518 -43347914 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1758 451 301 42 7 chr1 153848052 153848297 -43347135 - L1MA4 LINE L1 -288 6009 5757 5 1758 383 216 113 0 chr1 153848303 153848400 -43347032 - B1_Mus2 SINE Alu -38 109 2 5 1758 528 243 146 18 chr1 153848414 153848640 -43346792 - MER33 DNA MER1_type -50 274 20 5 1758 334 250 81 27 chr1 153848966 153849077 -43346355 - LTR86A2 LTR ERVL -288 220 104 5 1758 199 95 71 0 chr1 153849344 153849386 -43346046 + (CGTG)n Simple_repeat Simple_repeat 4 48 0 5 1758 281 196 0 0 chr1 153850912 153850963 -43344469 - Lx5 LINE L1 -337 6713 6663 5 1758 1061 274 43 31 chr1 153850962 153851286 -43344146 + Lx5 LINE L1 6721 7048 -2 5 1758 196 268 10 20 chr1 153851298 153851397 -43344035 + (TATG)n Simple_repeat Simple_repeat 3 100 0 5 1758 462 187 0 0 chr1 153851388 153851479 -43343953 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1758 315 346 86 13 chr1 153851689 153851923 -43343509 + MIRb SINE MIR 17 267 -1 5 1758 840 238 188 20 chr1 153852251 153852429 -43343003 + B4 SINE B4 2 211 -81 5 1758 207 0 0 0 chr1 153852429 153852452 -43342980 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 5 1758 840 238 188 20 chr1 153852452 153852518 -43342914 + B4 SINE B4 212 286 -6 5 1758 279 79 0 0 chr1 153852621 153852659 -43342773 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1758 213 39 0 0 chr1 153852752 153852778 -43342654 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1758 1062 43 0 0 chr1 153855430 153855570 -43339862 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1758 322 301 102 6 chr1 153856438 153856605 -43338827 - Tigger7 DNA MER2_type -9 2482 2300 5 1758 216 255 0 0 chr1 153856889 153856936 -43338496 + GA-rich Low_complexity Low_complexity 6 52 0 5 1758 393 259 12 0 chr1 153856936 153857021 -43338411 - PB1 SINE Alu -41 86 1 5 1758 513 224 56 81 chr1 153860125 153860285 -43335147 + B3A SINE B2 42 197 -1 5 1758 217 0 61 0 chr1 153861868 153861901 -43333531 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5 1758 217 265 78 48 chr1 153864180 153864283 -43331149 + B3A SINE B2 2 107 -91 5 1758 252 100 0 0 chr1 153864377 153864417 -43331015 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1758 225 0 0 0 chr1 153864417 153864442 -43330990 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1758 239 328 0 0 chr1 153866676 153866737 -43328695 + RCHARR1 DNA MER1_type 1 61 -913 5 1758 1855 262 65 65 chr1 153866734 153867058 -43328374 + RCHARR1 DNA MER1_type 201 517 -457 5 1758 891 137 7 40 chr1 153867058 153867210 -43328222 + B1_Mus2 SINE Alu 1 147 0 5 1758 1855 262 65 65 chr1 153867210 153867659 -43327773 + RCHARR1 DNA MER1_type 518 974 0 5 1758 1847 230 17 10 chr1 153867893 153868306 -43327126 + MTD LTR MaLR 1 416 -3 5 1758 258 237 9 0 chr1 153868308 153868371 -43327061 - ID4 SINE ID -85 67 1 5 1758 433 200 130 0 chr1 153868909 153869024 -43326408 - B1F SINE Alu -7 142 13 5 1758 21 0 0 0 chr1 153870094 153870115 -43325317 + AT_rich Low_complexity Low_complexity 1 21 0 5 1758 1190 61 0 0 chr1 153870115 153870262 -43325170 - B1_Mus2 SINE Alu 0 147 1 5 1758 256 226 16 0 chr1 153870601 153870663 -43324769 + B4 SINE B4 3 65 -227 5 1758 288 179 29 43 chr1 153871667 153871737 -43323695 + C-rich Low_complexity Low_complexity 3 71 0 5 1758 275 320 52 0 chr1 153871938 153872035 -43323397 + MIRb SINE MIR 112 213 -55 5 1758 1855 194 115 8 chr1 153872404 153872779 -43322653 - MTD LTR MaLR 0 419 5 5 1758 520 203 153 23 chr1 153872882 153873013 -43322419 + B1F2 SINE Alu 1 148 -1 6 1758 1294 294 76 4 chr1 153873516 153873977 -43321455 + Lx8 LINE L1 6780 7273 -200 6 1758 1149 295 52 65 chr1 153873974 153874608 -43320824 + L1MB1 LINE L1 5432 6057 -132 6 1758 296 153 35 12 chr1 153874664 153874750 -43320682 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1758 935 133 21 0 chr1 153875442 153875585 -43319847 + B1_Mus1 SINE Alu 3 148 0 6 1758 297 0 0 0 chr1 153875730 153875763 -43319669 + (CAAAAA)n Simple_repeat Simple_repeat 1 33 0 6 1758 360 130 0 0 chr1 153877090 153877159 -43318273 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1758 1039 62 0 27 chr1 153878242 153878392 -43317040 - B1_Mm SINE Alu 0 147 2 6 1759 359 269 54 0 chr1 153878945 153879038 -43316394 + PB1D7 SINE Alu 23 120 0 6 1759 22 0 0 0 chr1 153879569 153879591 -43315841 + AT_rich Low_complexity Low_complexity 1 22 0 6 1759 317 234 137 11 chr1 153879591 153879686 -43315746 - PB1D10 SINE Alu -6 111 5 6 1759 1530 171 106 57 chr1 153879753 153880229 -43315203 + RMER4B LTR ERVK 1 464 -2 6 1759 487 239 35 46 chr1 153880427 153880605 -43314827 - B3A SINE B2 0 198 33 6 1759 374 250 10 42 chr1 153881499 153881595 -43313837 + RSINE1 SINE B4 43 135 -30 6 1759 21 36 0 0 chr1 153881601 153881629 -43313803 + AT_rich Low_complexity Low_complexity 1 28 0 6 1759 22 80 0 0 chr1 153881671 153881721 -43313711 + AT_rich Low_complexity Low_complexity 1 50 0 6 1759 279 177 0 0 chr1 153882463 153882525 -43312907 + GA-rich Low_complexity Low_complexity 1 62 0 6 1759 234 0 0 0 chr1 153882829 153882855 -43312577 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1759 419 170 138 0 chr1 153882987 153883081 -43312351 + B3 SINE B2 6 112 -104 6 1759 557 180 20 20 chr1 153883964 153884117 -43311315 + G-rich Low_complexity Low_complexity 1 153 0 6 1759 398 310 192 19 chr1 153884117 153884278 -43311154 + B4 SINE B4 81 269 -23 6 1759 243 0 0 0 chr1 153884278 153884305 -43311127 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1759 525 32 0 0 chr1 153884305 153884367 -43311065 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1759 564 0 40 0 chr1 153884538 153884614 -43310818 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1759 413 163 32 32 chr1 153886513 153886608 -43308824 + PB1D7 SINE Alu 24 118 -2 6 1759 261 250 0 38 chr1 153887440 153887519 -43307913 + G-rich Low_complexity Low_complexity 3 78 0 6 1759 21 0 0 0 chr1 153887595 153887616 -43307816 + AT_rich Low_complexity Low_complexity 1 21 0 6 1759 186 316 144 0 chr1 153888112 153888286 -43307146 - MIRb SINE MIR -16 252 54 6 1759 343 83 33 0 chr1 153888955 153889015 -43306417 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1759 885 171 216 34 chr1 153889544 153889780 -43305652 - RMER15 LTR ERVL 0 575 297 6 1759 888 77 0 58 chr1 153889827 153889965 -43305467 - RMER15 LTR ERVL -415 160 31 6 1759 297 0 0 0 chr1 153889965 153889998 -43305434 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1759 438 54 40 0 chr1 153890004 153890078 -43305354 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1759 375 98 0 0 chr1 153890434 153890495 -43304937 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1759 1515 63 5 0 chr1 153891008 153891197 -43304235 - B2_Mm1a SINE B2 -3 190 1 6 1759 261 128 0 0 chr1 153891390 153891437 -43303995 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 6 1759 189 262 2 0 chr1 153891802 153891854 -43303578 - MIRb SINE MIR -165 103 44 6 1759 183 309 0 18 chr1 153892354 153892410 -43303022 - L2c LINE L2 -60 3327 3273 6 1759 378 0 0 0 chr1 153892921 153892963 -43302469 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1759 441 295 9 9 chr1 153892997 153893110 -43302322 - RSINE1 SINE B4 -52 113 1 6 1759 296 342 62 42 chr1 153893790 153893982 -43301450 + L2a LINE L2 3229 3424 -2 6 1759 27 0 0 0 chr1 153894448 153894475 -43300957 + AT_rich Low_complexity Low_complexity 1 27 0 6 1759 261 0 0 0 chr1 153895262 153895291 -43300141 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1759 236 256 128 0 chr1 153896391 153896415 -43299017 + ID_B1 SINE B4 128 224 0 6 1759 239 210 65 0 chr1 153896415 153896477 -43298955 + B1F SINE Alu 84 149 0 6 1759 315 309 62 75 chr1 153896931 153897097 -43298335 - MIRb SINE MIR -81 187 22 6 1759 513 0 0 0 chr1 153897668 153897725 -43297707 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1759 214 333 90 22 chr1 153897793 153897882 -43297550 + L3 LINE CR1 3216 3310 -1179 6 1759 783 272 67 36 chr1 153898234 153898459 -43296973 + ORR1E LTR MaLR 1 232 -127 6 1759 316 309 85 45 chr1 153899017 153899217 -43296215 + L3 LINE CR1 3435 3642 -847 6 1759 482 0 17 0 chr1 153899501 153899559 -43295873 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1759 297 352 46 15 chr1 153900393 153900528 -43294904 + MIRm SINE MIR 33 166 -42 6 1759 328 361 8 0 chr1 153900918 153901037 -43294395 + L3 LINE CR1 4325 4444 -45 6 1759 267 361 164 0 chr1 153901503 153901673 -43293759 - MIRb SINE MIR -38 230 32 6 1759 219 370 110 6 chr1 153901682 153901845 -43293587 - L3 LINE CR1 -1161 3328 3149 6 1759 523 284 6 19 chr1 153902015 153902173 -43293259 + MIR SINE MIR 32 187 -75 6 1759 220 191 0 0 chr1 153902833 153902875 -43292557 + (TGG)n Simple_repeat Simple_repeat 1 42 0 6 1759 4043 65 4 6 chr1 153903526 153904039 -43291393 - L1Md_F2 LINE L1 0 6582 6071 6 1759 5852 66 36 0 chr1 153904109 153904863 -43290569 - L1_Mus1 LINE L1 0 6567 5787 6 1759 22 0 0 0 chr1 153905260 153905282 -43290150 + AT_rich Low_complexity Low_complexity 1 22 0 6 1759 600 208 129 26 chr1 153905328 153905521 -43289911 - B3 SINE B2 -3 213 1 6 1759 354 323 108 0 chr1 153906572 153906730 -43288702 - MIRb SINE MIR -16 252 78 6 1759 406 234 21 21 chr1 153906951 153907047 -43288385 - PB1D10 SINE Alu 0 117 22 6 1759 317 353 15 0 chr1 153908573 153908709 -43286723 + (CA)n Simple_repeat Simple_repeat 2 139 0 6 1759 598 293 12 12 chr1 153909042 153909211 -43286221 - MARNA DNA Mariner -260 326 158 6 1759 241 291 0 0 chr1 153909735 153909790 -43285642 - Tigger7 DNA MER2_type -3 2488 2434 6 1759 938 201 33 5 chr1 153909957 153910167 -43285265 - B3 SINE B2 0 216 1 6 1759 503 136 0 41 chr1 153910206 153910352 -43285080 + (CA)n Simple_repeat Simple_repeat 2 141 0 6 1759 595 299 52 0 chr1 153910624 153910798 -43284634 - Tigger7 DNA MER2_type -2245 246 64 6 1759 433 267 128 59 chr1 153911260 153911447 -43283985 - RMER15 LTR ERVL -76 499 300 6 1759 1693 205 105 16 chr1 153912143 153912515 -43282917 + MTD LTR MaLR 1 405 -14 6 1759 300 253 40 13 chr1 153913104 153913180 -43282252 - ID2 SINE ID -4 79 2 6 1759 837 243 57 139 chr1 153913564 153913880 -43281552 + B4 SINE B4 3 292 0 6 1759 245 231 0 0 chr1 153913880 153913932 -43281500 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1759 291 218 51 0 chr1 153916951 153917029 -43278403 + (CATTT)n Simple_repeat Simple_repeat 4 85 0 6 1759 249 91 21 93 chr1 153917256 153917353 -43278079 + A-rich Low_complexity Low_complexity 4 93 0 6 1759 549 264 77 30 chr1 153917377 153917580 -43277852 + B3A SINE B2 1 211 -5 6 1759 783 167 65 0 chr1 153918047 153918185 -43277247 - B1_Mur2 SINE Alu 0 149 3 6 1759 413 36 18 0 chr1 153918279 153918334 -43277098 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1759 769 92 40 6 chr1 153918966 153919140 -43276292 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1759 243 267 13 13 chr1 153920550 153920626 -43274806 - ID4_ SINE ID -3 80 5 6 1759 188 191 48 0 chr1 153920938 153920980 -43274452 - L3 LINE CR1 -2315 2174 2131 6 1759 422 314 68 41 chr1 153921498 153921724 -43273708 + MIRb SINE MIR 13 251 -17 6 1759 474 304 37 0 chr1 153921751 153921886 -43273546 + ID_B1 SINE B4 85 224 0 6 1759 249 196 20 0 chr1 153921889 153921940 -43273492 + GA-rich Low_complexity Low_complexity 2 53 0 6 1759 198 103 0 0 chr1 153922451 153922480 -43272952 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1759 279 313 43 17 chr1 153922717 153922834 -43272598 - L1M5 LINE L1 -446 5794 5675 6 1759 376 309 100 35 chr1 153923189 153923420 -43272012 + L1M4 LINE L1 4811 5056 -1090 6 1759 377 236 217 0 chr1 153923426 153923532 -43271900 + MER3 DNA MER1_type 41 169 -40 6 1759 544 266 39 44 chr1 153923514 153923695 -43271737 + Charlie5 DNA MER1_type 2214 2393 -231 6 1759 501 255 77 47 chr1 153923707 153923733 -43271699 + B3A SINE B2 9 44 -154 6 1759 189 0 0 0 chr1 153923733 153923754 -43271678 + (CTG)n Simple_repeat Simple_repeat 3 23 0 6 1759 501 255 77 47 chr1 153923754 153923896 -43271536 + B3A SINE B2 45 181 -17 6 1759 221 0 35 0 chr1 153924187 153924216 -43271216 + (TTATA)n Simple_repeat Simple_repeat 1 30 0 6 1759 597 260 73 29 chr1 153924488 153924694 -43270738 + ID_B1 SINE B4 2 216 -8 6 1759 388 239 280 6 chr1 153924839 153925007 -43270425 + Tigger7 DNA MER2_type 2276 2489 -2 6 1759 264 319 41 55 chr1 153925451 153925597 -43269835 + L1MC5 LINE L1 6654 6797 -1245 6 1759 438 139 51 0 chr1 153925780 153925859 -43269573 + PB1D7 SINE Alu 38 120 0 6 1759 1230 54 0 0 chr1 153925882 153926029 -43269403 + B1_Mus2 SINE Alu 1 147 0 6 1759 307 259 117 73 chr1 153926136 153926315 -43269117 + L1MC5 LINE L1 6966 7152 -809 6 1759 181 0 69 0 chr1 153926598 153926627 -43268805 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1759 226 206 14 14 chr1 153926830 153926904 -43268528 + GA-rich Low_complexity Low_complexity 2 75 0 6 1759 369 347 73 48 chr1 153927118 153927324 -43268108 + MIRb SINE MIR 40 250 -18 6 1759 224 59 0 29 chr1 153927888 153927923 -43267509 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1759 1589 37 0 5 chr1 153927957 153928146 -43267286 - B2_Mm1a SINE B2 -4 189 2 6 1759 315 146 0 0 chr1 153928503 153928558 -43266874 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1759 218 370 58 15 chr1 153928843 153928980 -43266452 + L2b LINE L2 2340 2482 -937 7 1759 237 331 20 73 chr1 153929625 153929775 -43265657 + L2b LINE L2 3230 3371 -4 7 1759 302 248 36 90 chr1 153930046 153930157 -43265275 + BC1_Mm scRNA scRNA 7 111 -41 7 1759 416 241 0 0 chr1 153931081 153931160 -43264272 - BC1_Mm scRNA scRNA -59 93 15 7 1759 417 86 0 0 chr1 153933359 153933417 -43262015 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1759 593 301 38 25 chr1 153933575 153933735 -43261697 + RSINE1 SINE B4 3 164 -1 7 1759 199 140 0 39 chr1 153937118 153937170 -43258262 + CT-rich Low_complexity Low_complexity 1 50 0 7 1759 31 96 0 0 chr1 153937474 153937568 -43257864 + GC_rich Low_complexity Low_complexity 1 94 0 7 1759 201 74 0 0 chr1 153937644 153937671 -43257761 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 7 1759 380 20 20 0 chr1 153937737 153937786 -43257646 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1759 217 95 48 0 chr1 153937805 153937847 -43257585 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1759 1075 70 7 14 chr1 153938844 153938990 -43256442 - B1_Mus2 SINE Alu 0 147 3 7 1759 359 262 40 4 chr1 153939674 153939792 -43255640 - PB1D10 SINE Alu 0 117 1 7 1759 541 271 40 90 chr1 153940493 153940691 -43254741 + B3 SINE B2 5 193 -23 7 1759 299 85 21 0 chr1 153940691 153940738 -43254694 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1759 541 271 40 90 chr1 153940738 153940762 -43254670 + B3 SINE B2 194 216 0 7 1759 216 257 156 39 chr1 153940893 153940970 -43254462 + PB1D9 SINE Alu 29 114 -6 7 1759 26 30 0 0 chr1 153941060 153941093 -43254339 + AT_rich Low_complexity Low_complexity 1 33 0 7 1759 663 183 0 0 chr1 153941406 153941586 -43253846 + GA-rich Low_complexity Low_complexity 1 180 0 7 1759 439 285 80 16 chr1 153941606 153941731 -43253701 + RSINE1 SINE B4 25 157 -8 7 1759 355 200 12 59 chr1 153941733 153941818 -43253614 + RSINE1 SINE B4 81 161 -4 7 1759 832 301 48 70 chr1 153941934 153942291 -43253141 + MLT1A LTR MaLR 4 352 -22 7 1759 875 155 2 0 chr1 153942772 153942911 -43252521 + B1_Mur3 SINE Alu 1 142 -7 7 1759 850 133 13 6 chr1 153942959 153943118 -43252314 + GA-rich Low_complexity Low_complexity 4 163 0 7 1759 204 279 0 47 chr1 153944313 153944377 -43251055 + GA-rich Low_complexity Low_complexity 4 64 0 7 1759 226 148 36 18 chr1 153944396 153944451 -43250981 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1759 760 165 0 0 chr1 153944943 153945064 -43250368 - B1_Mus1 SINE Alu -16 132 12 7 1759 361 309 89 18 chr1 153944971 153945083 -43250349 - B4A SINE B4 -98 194 75 7 1759 808 242 19 37 chr1 153945085 153945300 -43250132 - L1MA4 LINE L1 -383 5917 5707 7 1759 203 367 39 8 chr1 153945465 153945594 -43249838 - MIR SINE MIR -31 231 99 7 1759 381 269 178 26 chr1 153946341 153946532 -43248900 - RMER15 LTR ERVL -14 561 342 7 1759 240 234 14 19 chr1 153946958 153947027 -43248405 + MIRc SINE MIR 62 127 -149 7 1759 487 53 27 0 chr1 153947049 153947124 -43248308 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1759 616 323 70 26 chr1 153947132 153947402 -43248030 - B4A SINE B4 -10 282 1 7 1759 208 70 23 23 chr1 153947512 153947556 -43247876 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1759 271 287 37 9 chr1 153947805 153947914 -43247518 - L1M4 LINE L1 -646 5528 5417 7 1759 330 250 158 18 chr1 153948150 153948264 -43247168 + ID_B1 SINE B4 94 223 -1 7 1759 222 128 0 0 chr1 153948330 153948369 -43247063 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 7 1759 339 130 0 0 chr1 153948522 153948576 -43246856 + (TTA)n Simple_repeat Simple_repeat 1 54 0 7 1759 503 239 34 68 chr1 153948576 153948724 -43246708 - B1_Mur1 SINE Alu -2 147 5 7 1759 2430 150 143 34 chr1 153948941 153949417 -43246015 - RLTR11A LTR ERVK 0 528 1 7 1759 358 285 191 30 chr1 153950514 153950891 -43244541 + L1M5 LINE L1 4976 5408 -716 7 1759 1037 210 70 0 chr1 153951219 153951419 -43244013 + B3 SINE B2 3 216 0 7 1759 25 0 0 0 chr1 153951436 153951461 -43243971 + AT_rich Low_complexity Low_complexity 1 25 0 7 1759 233 195 0 0 chr1 153951549 153951590 -43243842 - 5S rRNA rRNA -80 41 1 7 1759 2133 205 45 7 chr1 153951592 153952015 -43243417 + Lx6 LINE L1 7018 7456 -4 7 1759 23 68 0 0 chr1 153952015 153952059 -43243373 + AT_rich Low_complexity Low_complexity 1 44 0 7 1759 359 160 58 17 chr1 153952098 153952392 -43243040 + (TA)n Simple_repeat Simple_repeat 1 306 0 7 1759 328 259 103 69 chr1 153952399 153952515 -43242917 + RSINE1 SINE B4 3 122 -43 7 1759 2532 95 0 58 chr1 153952515 153952861 -43242571 + ORR1A3 LTR MaLR 1 326 0 7 1759 303 28 0 0 chr1 153952868 153952904 -43242528 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1759 566 266 70 0 chr1 153952925 153953053 -43242379 + B1F SINE Alu 1 137 -12 7 1759 739 193 43 0 chr1 153953587 153953738 -43241694 + ORR1D1 LTR MaLR 4 163 -215 7 1759 378 0 0 0 chr1 153953738 153953780 -43241652 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1759 699 246 54 0 chr1 153953780 153953795 -43241637 + ORR1D1 LTR MaLR 164 178 -200 7 1759 662 266 142 49 chr1 153953781 153954006 -43241426 - B4A SINE B4 -46 246 1 7 1759 368 300 85 48 chr1 153954093 153954282 -43241150 - MIRb SINE MIR -18 250 55 7 1759 207 0 0 0 chr1 153954500 153954523 -43240909 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1759 40 37 0 0 chr1 153954872 153954926 -43240506 + AT_rich Low_complexity Low_complexity 1 54 0 7 1759 785 169 31 10 chr1 153954928 153955120 -43240312 - BGLII_B LTR ERVK -125 316 121 7 1759 397 118 343 29 chr1 153955114 153955219 -43240213 - B2_Mm2 SINE B2 -11 184 47 7 1759 909 114 8 0 chr1 153955249 153955380 -43240052 - B2_Mm1t SINE B2 -12 181 50 7 1759 7740 66 2 11 chr1 153955415 153956739 -43238693 - L1_Mus2 LINE L1 -2 6564 5253 7 1759 425 100 0 0 chr1 153956742 153956802 -43238630 - B2_Mm2 SINE B2 -134 61 2 7 1759 630 107 188 0 chr1 153956804 153956916 -43238516 - BGLII_B LTR ERVK -308 133 1 7 1759 512 234 35 14 chr1 153956945 153957088 -43238344 + L1MB4 LINE L1 5162 5307 -839 7 1759 281 131 0 50 chr1 153957096 153957158 -43238274 + L1_Mur3 LINE L1 5349 5441 -850 7 1759 1535 279 95 42 chr1 153957293 153958001 -43237431 + L1MB4 LINE L1 5433 6177 -3 7 1759 260 291 291 50 chr1 153958080 153958283 -43237149 + B4A SINE B4 36 287 -5 7 1759 495 0 0 0 chr1 153958291 153958346 -43237086 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1759 1391 197 66 88 chr1 153958776 153959183 -43236249 + RMER10B LTR ERVL 1 398 0 7 1759 188 321 192 41 chr1 153960222 153960257 -43235175 - MIRb SINE MIR -38 230 200 7 1759 963 269 191 18 chr1 153960257 153960655 -43234777 - MLT1C LTR MaLR 0 467 1 7 1759 188 321 192 41 chr1 153960655 153960791 -43234641 - MIRb SINE MIR -69 199 33 7 1759 289 308 32 71 chr1 153960907 153961033 -43234399 - L2c LINE L2 -9 3378 3258 7 1759 202 340 0 0 chr1 153961701 153961754 -43233678 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1759 419 375 11 22 chr1 153962436 153962616 -43232816 + MLT2B2 LTR ERVL 260 437 -78 7 1759 252 281 146 0 chr1 153962764 153962860 -43232572 + BC1_Mm scRNA scRNA 2 111 -41 7 1759 614 337 85 12 chr1 153962866 153963124 -43232308 - MLT1L LTR MaLR -287 323 47 7 1759 309 254 27 40 chr1 153963890 153963964 -43231468 - ID_B1 SINE B4 -129 95 23 7 1759 3437 53 10 0 chr1 153964100 153964496 -43230936 - MTB LTR MaLR 0 400 1 7 1759 330 331 87 6 chr1 153964609 153964770 -43230662 - MER5B DNA MER1_type 0 178 5 7 1759 305 253 131 88 chr1 153964756 153964916 -43230516 - MER5A DNA MER1_type -10 179 13 7 1759 295 348 8 25 chr1 153964932 153965050 -43230382 + MER58C DNA MER1_type 3 118 -97 7 1759 189 246 151 15 chr1 153965259 153965385 -43230047 - MIR3 SINE MIR -14 194 60 7 1759 1457 226 70 34 chr1 153965405 153965762 -43229670 + ORR1D2 LTR MaLR 1 370 0 7 1759 188 352 14 14 chr1 153965933 153966005 -43229427 - L2c LINE L2 -56 3331 3260 7 1759 913 139 7 0 chr1 153966631 153966768 -43228664 - B1_Mus2 SINE Alu 0 147 10 7 1759 946 214 9 52 chr1 153968477 153968672 -43226760 + B3 SINE B2 14 203 -13 7 1759 216 0 0 0 chr1 153968672 153968696 -43226736 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1759 946 214 9 52 chr1 153968696 153968712 -43226720 + B3 SINE B2 204 215 -1 7 1759 243 88 0 0 chr1 153968718 153968752 -43226680 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 1759 21 36 0 0 chr1 153969816 153969844 -43225588 + AT_rich Low_complexity Low_complexity 1 28 0 7 1759 360 0 0 0 chr1 153970120 153970160 -43225272 + (CCTG)n Simple_repeat Simple_repeat 3 42 0 7 1759 4606 33 77 0 chr1 153970819 153971339 -43224093 - LTRIS2 LTR ERV1 0 564 5 7 1759 241 220 48 117 chr1 153972061 153972164 -43223268 + MT2B LTR ERVL 182 277 -324 7 1759 588 144 0 0 chr1 153972079 153972169 -43223263 + B1_Mur1 SINE Alu 47 136 -13 7 1759 1235 43 0 0 chr1 153972465 153972603 -43222829 + B1_Mm SINE Alu 1 138 -9 7 1759 1348 267 26 26 chr1 153972643 153972993 -43222439 + ORR1E LTR MaLR 10 359 0 7 1759 402 139 0 0 chr1 153973317 153973389 -43222043 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1759 547 288 100 71 chr1 153973409 153973678 -43221754 - B4 SINE B4 -14 278 2 7 1759 615 292 147 26 chr1 153974010 153974242 -43221190 - RMER15 LTR ERVL -16 559 300 7 1759 265 279 30 61 chr1 153974350 153974449 -43220983 - RMER15 LTR ERVL -479 96 1 7 1759 23 33 0 0 chr1 153975063 153975093 -43220339 + AT_rich Low_complexity Low_complexity 1 30 0 7 1759 448 293 45 32 chr1 153975130 153975285 -43220147 - RSINE1 SINE B4 -6 159 3 7 1759 21 36 0 0 chr1 153976544 153976572 -43218860 + AT_rich Low_complexity Low_complexity 1 28 0 7 1759 24 77 0 0 chr1 153976617 153976669 -43218763 + AT_rich Low_complexity Low_complexity 1 52 0 7 1759 253 337 11 11 chr1 153977291 153977378 -43218054 + PB1 SINE Alu 22 108 -19 7 1759 186 43 0 0 chr1 153977480 153977503 -43217929 + (G)n Simple_repeat Simple_repeat 1 23 0 7 1759 187 326 137 51 chr1 153977922 153978119 -43217313 - L2 LINE L2 -830 2589 2376 7 1759 270 304 129 65 chr1 153978187 153978342 -43217090 + MIRb SINE MIR 92 256 -12 8 1759 236 156 62 15 chr1 153979657 153979722 -43215710 - Lx2B LINE L1 0 7000 6933 8 1759 1252 160 33 5 chr1 153979727 153979941 -43215491 + Lx2B LINE L1 6493 6712 -288 8 1759 345 283 41 51 chr1 153980566 153980763 -43214669 - L1M5 LINE L1 -342 5822 5628 8 1759 581 208 200 7 chr1 153980861 153980935 -43214497 - B4 SINE B4 -109 183 108 8 1759 216 0 0 0 chr1 153980935 153980959 -43214473 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1759 581 208 200 7 chr1 153980959 153981034 -43214398 - B4 SINE B4 -185 107 6 8 1759 664 242 40 101 chr1 153982006 153982101 -43213331 - L1MB5 LINE L1 -31 6143 6052 8 1759 242 250 38 50 chr1 153982101 153982181 -43213251 + ID4 SINE ID 3 81 -2 8 1759 664 242 40 101 chr1 153982181 153982333 -43213099 - L1MB5 LINE L1 -123 6051 5911 8 1759 282 191 0 0 chr1 153982422 153982469 -43212963 - ID4 SINE ID -10 73 27 8 1759 249 33 0 0 chr1 153982485 153982515 -43212917 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1759 1499 121 32 5 chr1 153982515 153982731 -43212701 - URR1B DNA MER1_type -2 223 2 8 1759 708 302 77 47 chr1 153982856 153983196 -43212236 - MLT1D LTR MaLR -8 497 148 8 1759 2186 199 128 47 chr1 153983312 153983865 -43211567 + RMER19B LTR ERVK 305 902 0 8 1759 778 261 78 29 chr1 153984000 153984205 -43211227 - B3 SINE B2 0 216 2 8 1759 227 333 73 0 chr1 153984221 153984317 -43211115 - Charlie16a DNA MER1_type -104 238 136 8 1759 338 257 0 13 chr1 153984920 153984995 -43210437 - BC1_Mm scRNA scRNA -71 81 8 8 1759 313 200 0 0 chr1 153985472 153985522 -43209910 + PB1D7 SINE Alu 17 66 -54 8 1759 396 0 0 0 chr1 153985547 153985591 -43209841 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1759 333 0 0 0 chr1 153985591 153985627 -43209805 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1759 404 119 0 0 chr1 153985630 153985689 -43209743 + B1_Mur3 SINE Alu 67 125 -24 8 1759 1581 6 0 0 chr1 153985695 153985873 -43209559 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 8 1759 322 276 121 8 chr1 153986349 153986473 -43208959 - B1F1 SINE Alu 0 149 12 8 1759 198 310 179 21 chr1 153987350 153987495 -43207937 - MIRb SINE MIR -64 204 37 8 1759 192 40 0 0 chr1 153988808 153988833 -43206599 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1759 338 309 210 12 chr1 153989209 153989533 -43205899 + L1MC3 LINE L1 7217 7604 -181 8 1759 487 246 74 0 chr1 153989619 153989741 -43205691 - MLT1D LTR MaLR -7 498 368 8 1759 412 294 180 15 chr1 153989774 153989974 -43205458 - MLT1D LTR MaLR -272 233 1 8 1759 405 0 0 0 chr1 153989982 153990027 -43205405 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1759 405 325 83 19 chr1 153990032 153990189 -43205243 - B3A SINE B2 -18 180 14 8 1759 297 75 0 0 chr1 153990217 153990257 -43205175 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1759 1036 271 103 15 chr1 153990259 153990521 -43204911 + B4A SINE B4 2 286 -6 8 1759 270 320 57 0 chr1 153991032 153991154 -43204278 + MIR SINE MIR 64 192 -70 8 1759 207 0 0 0 chr1 153991331 153991354 -43204078 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1759 26 30 0 0 chr1 153991482 153991515 -43203917 + AT_rich Low_complexity Low_complexity 1 33 0 8 1759 254 317 139 31 chr1 153991743 153992166 -43203266 + L1M5 LINE L1 4152 4620 -1526 8 1759 1985 164 76 28 chr1 153992537 153992894 -43202538 - ORR1D1 LTR MaLR 0 374 1 8 1759 255 79 0 0 chr1 153993077 153993115 -43202317 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 8 1759 772 170 152 47 chr1 153993230 153993408 -43202024 - ORR1C2 LTR MaLR 0 384 186 8 1759 759 22 0 0 chr1 153993408 153993497 -43201935 + (GAA)n Simple_repeat Simple_repeat 1 89 0 8 1759 772 170 152 47 chr1 153993497 153993509 -43201923 - ORR1C2 LTR MaLR -199 185 174 8 1759 465 219 0 0 chr1 153993509 153993669 -43201763 + GA-rich Low_complexity Low_complexity 1 160 0 8 1759 1012 152 0 94 chr1 153993674 153993877 -43201555 - ORR1C2 LTR MaLR -200 184 1 8 1759 195 69 0 0 chr1 153994363 153994392 -43201040 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1759 699 243 160 0 chr1 153994641 153994708 -43200724 + B3 SINE B2 1 67 -149 8 1759 492 48 0 0 chr1 153994708 153994771 -43200661 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1759 699 243 160 0 chr1 153994771 153994884 -43200548 + B3 SINE B2 68 209 -7 8 1759 1361 216 68 28 chr1 153995349 153995701 -43199731 - MTEb LTR MaLR -13 366 1 8 1759 665 311 46 48 chr1 153995745 153995840 -43199592 - MTE-int LTR MaLR -1138 442 283 8 1759 723 257 14 14 chr1 153995840 153995986 -43199446 - RSINE1 SINE B4 -16 149 4 8 1759 665 311 46 48 chr1 153995986 153996096 -43199336 - MTE-int LTR MaLR -1138 282 93 8 1759 259 163 0 0 chr1 153996092 153996135 -43199297 - MTEa LTR MaLR -327 52 10 8 1759 519 247 17 16 chr1 153996277 153996407 -43199025 - PB1D10 SINE Alu -3 146 10 8 1759 741 172 0 16 chr1 153996570 153996753 -43198679 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1759 499 215 11 17 chr1 153996717 153996897 -43198535 + (CATA)n Simple_repeat Simple_repeat 2 180 0 8 1759 537 299 100 38 chr1 153996978 153997144 -43198288 - L2a LINE L2 -9 3417 3251 8 1759 1668 66 18 9 chr1 153997144 153997372 -43198060 + L1_Mus3 LINE L1 6409 6638 0 8 1759 537 299 100 38 chr1 153997372 153997494 -43197938 - L2a LINE L2 -176 3250 3112 8 1759 973 119 18 0 chr1 154000090 154000258 -43195174 + (TTCTC)n Simple_repeat Simple_repeat 2 172 0 1 1759 1311 133 0 5 chr1 154000566 154000762 -43194670 - B2_Mm2 SINE B2 0 195 1 2 1759 995 192 54 10 chr1 154000792 154000997 -43194435 + B3 SINE B2 2 215 -1 3 1759 201 39 0 0 chr1 154000998 154001024 -43194408 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1759 423 0 0 0 chr1 154001356 154001403 -43194029 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1759 393 191 145 21 chr1 154001977 154002103 -43193329 + L1MB3 LINE L1 5768 5903 -275 6 1759 464 216 112 0 chr1 154002196 154002321 -43193111 - B1F SINE Alu -3 146 8 7 1759 317 282 147 7 chr1 154002327 154002470 -43192962 + L1MB3 LINE L1 6006 6168 -15 6 1759 271 297 166 76 chr1 154002878 154003089 -43192343 + B4 SINE B4 45 274 -18 8 1759 975 187 32 50 chr1 154003492 154003712 -43191720 + Lx4B LINE L1 6768 6983 -75 9 1759 969 150 0 7 chr1 154004186 154004334 -43191098 + B1_Mur2 SINE Alu 3 149 0 1 1759 279 93 0 0 chr1 154004345 154004388 -43191044 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1759 372 103 0 0 chr1 154004716 154004774 -43190658 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1759 623 275 136 29 chr1 154004775 154005018 -43190414 - B4A SINE B4 -23 269 1 1 1759 848 256 0 25 chr1 154006707 154006907 -43188525 + Lx8 LINE L1 6237 6431 -1042 1 1759 2206 275 57 46 chr1 154006902 154007641 -43187791 + Lx8 LINE L1 6726 7472 -1 1 1759 768 42 0 0 chr1 154007724 154007820 -43187612 + (GAA)n Simple_repeat Simple_repeat 1 96 0 1 1759 21 36 0 0 chr1 154008157 154008185 -43187247 + AT_rich Low_complexity Low_complexity 1 28 0 1 1759 772 138 79 7 chr1 154008240 154008379 -43187053 + B1_Mur4 SINE Alu 2 150 0 1 1759 228 135 0 0 chr1 154008389 154008426 -43187006 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1759 410 310 39 7 chr1 154008625 154008813 -43186619 + L1MEg LINE L1 1597 1860 -4557 1 219 1169 244 15 15 chr1 154009562 154009836 -43185596 - B4 SINE B4 -17 275 2 2 1760 644 212 7 28 chr1 154009865 154010006 -43185426 + B1_Mur1 SINE Alu 1 138 -11 2 1760 248 276 53 138 chr1 154010937 154011126 -43184306 + MER58B DNA MER1_type 132 304 -37 2 1760 288 53 0 0 chr1 154013298 154013336 -43182096 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1760 929 239 5 19 chr1 154013378 154013591 -43181841 - B4A SINE B4 -1 291 82 2 1760 325 120 11 46 chr1 154013675 154013762 -43181670 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1760 2160 174 44 22 chr1 154014267 154014678 -43180754 - MTC LTR MaLR 0 421 2 2 1760 294 95 0 0 chr1 154015961 154016003 -43179429 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2 1760 209 317 160 14 chr1 154016068 154016212 -43179220 + MIRb SINE MIR 35 199 -69 2 1760 612 259 127 76 chr1 154016378 154016654 -43178778 + B4A SINE B4 1 290 -2 2 1760 468 51 0 0 chr1 154016697 154016756 -43178676 + (CACG)n Simple_repeat Simple_repeat 1 59 0 3 1760 21 36 0 0 chr1 154017771 154017799 -43177633 + AT_rich Low_complexity Low_complexity 1 28 0 3 1760 222 326 50 40 chr1 154017872 154017920 -43177512 - B4A SINE B4 -106 186 87 3 1760 226 314 0 0 chr1 154017920 154017971 -43177461 - B1F2 SINE Alu -97 52 2 3 1760 285 98 0 0 chr1 154018189 154018230 -43177202 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1760 234 91 0 0 chr1 154019214 154019247 -43176185 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 3 1760 24 0 0 0 chr1 154020586 154020610 -43174822 + AT_rich Low_complexity Low_complexity 1 24 0 3 1760 665 188 253 23 chr1 154020610 154020784 -43174648 - B3 SINE B2 0 216 3 3 1760 286 247 96 0 chr1 154021000 154021073 -43174359 + ID4_ SINE ID 2 81 -2 3 1760 201 260 0 0 chr1 154021115 154021165 -43174267 - MIRb SINE MIR 0 268 219 3 1760 716 253 126 5 chr1 154021225 154021424 -43174008 + ID_B1 SINE B4 2 224 0 4 1760 305 348 42 28 chr1 154023808 154023950 -43171482 + RMER15 LTR ERVL 278 421 -154 4 1760 459 0 0 0 chr1 154025249 154025300 -43170132 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1760 354 167 0 0 chr1 154025501 154025585 -43169847 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1760 462 36 0 0 chr1 154025909 154025965 -43169467 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1760 332 311 117 15 chr1 154025965 154026102 -43169330 - B4A SINE B4 -2 290 140 4 1760 1427 22 16 21 chr1 154026104 154026290 -43169142 - L1Md_F2 LINE L1 -2 6580 6396 4 1760 4290 25 12 2 chr1 154026290 154026778 -43168654 - MT2_Mm LTR ERVL 0 493 1 4 1760 321 0 0 0 chr1 154026778 154026816 -43168616 - MERVL-int LTR ERVL 0 5485 5448 4 1760 341 151 13 40 chr1 154026816 154026892 -43168540 - ORR1A3-int LTR MaLR -1323 640 567 4 1760 10248 29 2 0 chr1 154026892 154028050 -43167382 - MERVL-int LTR ERVL -114 5371 4212 4 1760 9084 26 1 0 chr1 154028030 154029050 -43166382 + MERVL-int LTR ERVL 3188 4208 -1277 4 1760 267 33 0 0 chr1 154029050 154029080 -43166352 - L1Md_T LINE L1 -183 6399 6370 5 1760 317 347 16 25 chr1 154029080 154029201 -43166231 - B4A SINE B4 -144 148 29 4 1760 387 41 0 0 chr1 154029234 154029283 -43166149 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1760 1903 161 62 10 chr1 154029581 154029965 -43165467 + RLTR9E LTR ERVK 6 409 0 5 1760 208 319 80 27 chr1 154030099 154030286 -43165146 + L2 LINE L2 2769 2965 -454 5 1760 238 77 154 0 chr1 154030849 154030888 -43164544 - MTD LTR MaLR -14 405 361 5 1760 1869 126 21 12 chr1 154030933 154031271 -43164161 + RLTR15 LTR ERVK 5 345 -14 5 1760 743 295 65 56 chr1 154032780 154033087 -43162345 + L1M3 LINE L1 4973 5273 -867 5 1760 850 197 147 5 chr1 154033087 154033271 -43162161 + B3 SINE B2 1 210 -6 5 1760 743 301 59 38 chr1 154033271 154033514 -43161918 + L1M3 LINE L1 5274 5541 -771 5 1760 665 209 146 28 chr1 154033523 154033805 -43161627 - L1MD LINE L1 -849 5495 5178 5 1760 870 234 34 19 chr1 154033806 154034015 -43161417 - B3 SINE B2 0 216 5 5 1760 409 279 262 74 chr1 154034908 154035152 -43160280 + B4A SINE B4 3 292 0 6 1760 21 0 0 0 chr1 154035228 154035249 -43160183 + AT_rich Low_complexity Low_complexity 1 21 0 6 1760 878 239 0 0 chr1 154035281 154035457 -43159975 + B3 SINE B2 2 177 -39 6 1760 26 0 0 0 chr1 154035844 154035870 -43159562 + AT_rich Low_complexity Low_complexity 1 26 0 6 1760 300 268 0 0 chr1 154035911 154035982 -43159450 + Lx6 LINE L1 7047 7117 -343 6 1760 22 0 0 0 chr1 154037249 154037271 -43158161 + AT_rich Low_complexity Low_complexity 1 22 0 6 1760 814 52 60 0 chr1 154037286 154037402 -43158030 - ORR1B1 LTR MaLR 0 394 272 6 1760 1611 159 3 0 chr1 154037400 154037683 -43157749 - ORR1B1-int LTR MaLR -435 1074 791 6 1760 1774 93 16 8 chr1 154037689 154037939 -43157493 - L1Md_F2 LINE L1 -12 6570 6319 6 1760 261 75 0 0 chr1 154037945 154037985 -43157447 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 6 1760 180 200 0 0 chr1 154037986 154038026 -43157406 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 6 1760 2372 144 43 12 chr1 154038031 154038445 -43156987 - Lx4B LINE L1 -12 7046 6620 7 1760 5698 109 74 14 chr1 154038445 154038670 -43156762 - Lx4B LINE L1 -527 6531 6284 7 1760 567 0 0 0 chr1 154038670 154038733 -43156699 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 7 1760 6469 116 42 10 chr1 154038733 154040076 -43155356 - Lx4B LINE L1 -775 6283 4897 7 1760 573 353 61 19 chr1 154040076 154040339 -43155093 - MTD LTR MaLR -145 274 1 7 1760 365 313 147 43 chr1 154040396 154041085 -43154347 + HAL1 LINE L1 1059 1818 -689 7 1760 888 263 24 0 chr1 154041655 154041860 -43153572 - B3 SINE B2 -2 214 5 7 1760 29 0 0 0 chr1 154042182 154042211 -43153221 + AT_rich Low_complexity Low_complexity 1 29 0 7 1760 206 156 0 22 chr1 154042368 154042414 -43153018 + CT-rich Low_complexity Low_complexity 2 46 0 7 1760 267 259 37 12 chr1 154043052 154043134 -43152298 + CT-rich Low_complexity Low_complexity 6 89 0 7 1760 1734 310 96 38 chr1 154043137 154044491 -43150941 - Lx9 LINE L1 -1812 5832 4396 7 1760 2269 154 32 10 chr1 154044491 154044903 -43150529 - MTC LTR MaLR 0 421 1 7 1760 944 268 67 107 chr1 154044954 154045164 -43150268 - L1M2 LINE L1 -1832 4314 4157 8 1760 698 275 22 6 chr1 154045164 154045343 -43150089 - B3A SINE B2 -16 182 1 8 1760 1976 283 65 114 chr1 154045343 154045883 -43149549 - L1M2 LINE L1 -1990 4156 3595 8 1760 449 224 51 8 chr1 154045885 154046002 -43149430 - ID_B1 SINE B4 0 224 103 8 1760 407 224 91 63 chr1 154046002 154046026 -43149406 - B1F SINE Alu 0 147 3 8 1760 1976 283 65 114 chr1 154046026 154046960 -43148472 - L1M2 LINE L1 -1990 3594 2621 8 1760 2091 182 13 5 chr1 154046960 154047335 -43148097 - ORR1C1 LTR MaLR 0 378 1 8 1760 1976 291 64 118 chr1 154047335 154047423 -43148009 - L1M2 LINE L1 -3523 2620 2531 8 1760 7774 75 20 5 chr1 154048554 154049562 -43145870 - RLTR13D5 LTR ERVK 0 1023 1 8 1760 197 221 15 0 chr1 154049752 154049820 -43145612 + (CATA)n Simple_repeat Simple_repeat 2 70 0 8 1760 523 238 0 11 chr1 154049841 154050015 -43145417 + (TA)n Simple_repeat Simple_repeat 2 173 0 8 1760 198 0 0 0 chr1 154050394 154050416 -43145016 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1760 277 252 34 101 chr1 154051287 154051406 -43144026 + MLT1A1 LTR MaLR 19 129 -279 8 1760 390 129 0 0 chr1 154051604 154051666 -43143766 + (TCCCC)n Simple_repeat Simple_repeat 2 63 0 9 1760 279 173 0 0 chr1 154051697 154051749 -43143683 + C-rich Low_complexity Low_complexity 2 53 0 9 1760 266 206 0 14 chr1 154051783 154051857 -43143575 + CT-rich Low_complexity Low_complexity 3 75 0 9 1760 358 262 38 0 chr1 154051859 154051939 -43143493 - ID4_ SINE ID 0 83 1 9 1760 664 130 31 0 chr1 154052119 154052280 -43143152 + (TCTA)n Simple_repeat Simple_repeat 2 167 0 9 1760 4802 99 46 38 chr1 154052293 154053093 -43142339 + RMER17D2 LTR ERVK 1 807 -2 9 1760 4728 259 61 58 chr1 154053111 154053663 -43141769 - Lx5 LINE L1 0 7050 6456 9 1760 180 0 0 0 chr1 154053663 154053683 -43141749 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 1760 4728 239 36 45 chr1 154053683 154054723 -43140709 - Lx5 LINE L1 -595 6455 5460 9 1760 10864 167 101 19 chr1 154054723 154055679 -43139753 - Lx5 LINE L1 -2013 3867 2742 9 1760 1059 137 0 0 chr1 154055679 154055854 -43139578 + (TC)n Simple_repeat Simple_repeat 2 176 0 9 1760 10864 174 82 39 chr1 154055854 154057730 -43137702 - Lx5 LINE L1 -3139 2741 892 9 1760 483 60 0 0 chr1 154057963 154058030 -43137402 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 9 1760 223 234 15 15 chr1 154058050 154058115 -43137317 + GA-rich Low_complexity Low_complexity 4 68 0 1 1760 307 345 95 0 chr1 154059086 154059202 -43136230 + LTR33 LTR ERVL 114 240 -275 1 1760 546 286 37 48 chr1 154059427 154059614 -43135818 + B3A SINE B2 14 198 0 1 1760 476 297 126 41 chr1 154059706 154060071 -43135361 + MLT1D LTR MaLR 1 396 -109 1 1760 339 192 13 0 chr1 154060082 154060160 -43135272 + MLT1D LTR MaLR 427 505 0 1 1760 461 231 10 0 chr1 154060564 154060668 -43134764 + B4A SINE B4 142 246 -46 1 1760 230 329 0 41 chr1 154060935 154060947 -43134485 + ID4 SINE ID 3 72 -11 1 1760 247 311 0 0 chr1 154060947 154061008 -43134424 + tRNA-Ala-GCA tRNA tRNA 6 66 -9 1 1760 555 241 0 0 chr1 154061341 154061503 -43133929 + (CA)n Simple_repeat Simple_repeat 1 162 0 1 1760 498 278 12 24 chr1 154061889 154062055 -43133377 - L1ME2z LINE L1 -11 6433 6270 1 1760 204 125 0 0 chr1 154062064 154062096 -43133336 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1 1760 504 0 0 0 chr1 154062487 154062543 -43132889 + (TGG)n Simple_repeat Simple_repeat 1 56 0 1 1760 246 81 0 0 chr1 154062815 154062852 -43132580 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1760 1188 49 0 0 chr1 154063266 154063409 -43132023 + B1_Mus2 SINE Alu 5 147 0 1 1760 198 0 0 0 chr1 154063409 154063431 -43132001 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1760 496 316 0 0 chr1 154063997 154064136 -43131296 - ID_B1 SINE B4 -2 222 84 1 1760 260 154 19 0 chr1 154065021 154065073 -43130359 + (TTA)n Simple_repeat Simple_repeat 3 55 0 1 1760 222 37 0 0 chr1 154065073 154065100 -43130332 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1760 649 202 74 65 chr1 154066602 154066819 -43128613 + RLTR20B3 LTR ERVK 21 239 -338 1 1760 524 122 22 0 chr1 154066848 154066938 -43128494 + (GGGA)n Simple_repeat Simple_repeat 3 94 0 1 1760 754 272 77 26 chr1 154066947 154067220 -43128212 + RLTR20B3 LTR ERVK 193 471 -106 1 1760 441 0 0 0 chr1 154067220 154067269 -43128163 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1760 754 280 63 52 chr1 154067269 154067348 -43128084 + RLTR20B3 LTR ERVK 449 526 -1 1 1760 198 383 22 57 chr1 154067608 154067835 -43127597 + L2a LINE L2 2910 3128 -259 1 1760 235 289 177 13 chr1 154068283 154068441 -43126991 + LTR50 LTR ERVL 612 795 0 1 1760 712 279 12 59 chr1 154068517 154068844 -43126588 + B4A SINE B4 1 292 0 1 1760 261 0 0 0 chr1 154069013 154069042 -43126390 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1 1760 436 279 50 43 chr1 154069042 154069203 -43126229 - RSINE1 SINE B4 -1 164 3 1 1760 242 364 63 21 chr1 154069681 154069824 -43125608 + MIRb SINE MIR 13 161 -107 1 1760 306 302 47 0 chr1 154069820 154069949 -43125483 - MIR SINE MIR 0 262 128 1 1760 363 257 186 10 chr1 154069972 154070074 -43125358 + ID_B1 SINE B4 94 213 -11 1 1760 477 0 0 0 chr1 154070074 154070127 -43125305 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1 1760 313 283 0 54 chr1 154070130 154070242 -43125190 - MIR SINE MIR -129 133 28 1 1760 232 306 84 45 chr1 154070305 154070459 -43124973 - MLT1A LTR MaLR -124 250 91 1 1760 281 276 0 84 chr1 154070467 154070562 -43124870 - MLT1A LTR MaLR -245 129 43 1 1760 281 356 64 10 chr1 154070997 154071201 -43124231 + L2a LINE L2 3207 3421 -5 1 1760 1298 188 102 25 chr1 154071628 154071950 -43123482 - ORR1D1 LTR MaLR 0 374 28 1 1760 194 105 0 26 chr1 154072047 154072086 -43123346 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1 1760 219 288 54 14 chr1 154072134 154072208 -43123224 - ID4 SINE ID -3 80 4 1 1760 1987 310 37 29 chr1 154073651 154074305 -43121127 + Lx8 LINE L1 6255 6913 -560 1 1760 492 242 16 24 chr1 154074315 154074442 -43120990 + B3A SINE B2 64 189 -9 1 1760 1018 158 112 15 chr1 154074619 154074825 -43120607 + URR1A DNA MER1_type 1 226 0 1 1760 2511 142 5 5 chr1 154075268 154075658 -43119774 - ORR1B1 LTR MaLR -2 392 3 1 1760 181 250 0 0 chr1 154076350 154076386 -43119046 - MIR SINE MIR -161 101 66 1 1760 333 0 0 0 chr1 154078050 154078087 -43117345 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1760 477 0 0 0 chr1 154078087 154078139 -43117293 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1760 468 331 10 31 chr1 154078165 154078361 -43117071 - ORR1E LTR MaLR -167 192 1 1 1760 189 0 0 0 chr1 154078428 154078449 -43116983 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1760 4215 50 2 26 chr1 154080179 154080716 -43114716 + L1_Mus1 LINE L1 6040 6563 -4 1 1760 471 118 0 0 chr1 154080928 154081004 -43114428 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1760 800 294 9 9 chr1 154081070 154081293 -43114139 - B4A SINE B4 -68 224 2 1 1760 1239 190 0 26 chr1 154081293 154081525 -43113907 - URR1A DNA MER1_type 0 226 1 1 1760 885 128 88 0 chr1 154083946 154084094 -43111338 - B2_Mm2 SINE B2 -33 162 2 1 1760 907 236 259 61 chr1 154084281 154084706 -43110726 + MLT2B2 LTR ERVL 3 511 -4 1 1760 288 277 12 0 chr1 154085461 154085544 -43109888 + B4A SINE B4 12 95 -197 1 1760 3422 80 26 48 chr1 154085545 154085690 -43109742 + MusHAL1 LINE L1 1560 1708 -1004 1 1760 1198 68 0 0 chr1 154085690 154085838 -43109594 + B1_Mus1 SINE Alu 1 148 0 1 1760 3422 80 26 48 chr1 154085838 154086230 -43109202 + MusHAL1 LINE L1 1709 2085 -627 1 1760 704 260 45 30 chr1 154086315 154086517 -43108915 + B4A SINE B4 84 288 -4 1 1760 330 26 0 0 chr1 154087266 154087305 -43108127 + (GGAGA)n Simple_repeat Simple_repeat 1 39 0 1 1760 984 86 28 6 chr1 154087305 154087481 -43107951 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1760 191 167 24 0 chr1 154087481 154087523 -43107909 + GA-rich Low_complexity Low_complexity 2 44 0 1 1760 646 262 149 37 chr1 154087612 154087933 -43107499 - Tigger7 DNA MER2_type -1 2490 2134 1 1760 1102 261 13 57 chr1 154087940 154088257 -43107175 - Tigger7 DNA MER2_type -2188 303 1 1 1760 198 242 65 0 chr1 154088396 154088458 -43106974 + MIRm SINE MIR 17 82 -194 1 1760 1250 55 27 11 chr1 154088545 154088574 -43106858 - B2_Mm1a SINE B2 0 193 161 1 1760 306 0 0 0 chr1 154088574 154088608 -43106824 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1760 1250 55 27 11 chr1 154088608 154088763 -43106669 - B2_Mm1a SINE B2 -33 160 6 1 1760 280 227 170 30 chr1 154089092 154089192 -43106240 + B1F SINE Alu 29 142 -7 1 1760 31507 52 1 5 chr1 154089204 154094330 -43101102 + L1Md_T LINE L1 1 5075 -811 1 1760 8639 29 1 0 chr1 154094349 154095344 -43100088 + L1Md_T LINE L1 5590 6585 0 1 1760 1223 120 27 5 chr1 154095519 154095703 -43099729 + B2_Mm2 SINE B2 1 188 -7 1 1760 1308 100 28 6 chr1 154095712 154095893 -43099539 + B2_Mm2 SINE B2 1 185 -10 1 1760 762 227 13 0 chr1 154097125 154097275 -43098157 + B3 SINE B2 64 215 -1 1 1760 414 329 70 26 chr1 154097328 154097484 -43097948 - B3A SINE B2 -35 163 1 1 1760 1781 159 25 91 chr1 154097830 154098222 -43097210 + RLTR14 LTR ERV1 3 374 -8 1 1760 3462 20 2 8 chr1 154098222 154098620 -43096812 - MTA_Mm LTR MaLR 0 396 1 1 1760 1781 159 25 91 chr1 154098620 154098634 -43096798 + RLTR14 LTR ERV1 375 382 0 1 1760 374 170 11 0 chr1 154098982 154099076 -43096356 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1760 2327 63 3 3 chr1 154099151 154099470 -43095962 - ORR1A2 LTR MaLR -8 319 1 1 1760 629 270 140 14 chr1 154099482 154099696 -43095736 - B4A SINE B4 -51 241 1 1 1760 225 327 99 0 chr1 154101356 154101457 -43093975 - Tigger5 DNA MER2_type -1 2405 2295 1 1760 247 302 154 42 chr1 154101460 154101674 -43093758 - Tigger5 DNA MER2_type -2167 239 2 1 1760 315 318 15 44 chr1 154102899 154103034 -43092398 - MLT1D LTR MaLR -91 414 284 1 1760 22 35 0 0 chr1 154103065 154103094 -43092338 + AT_rich Low_complexity Low_complexity 1 29 0 1 1760 465 274 38 87 chr1 154103199 154103383 -43092049 + MLT1D LTR MaLR 1 175 -330 1 1760 892 302 26 10 chr1 154103486 154103790 -43091642 + MLT2B4 LTR ERVL 2 310 -246 1 1760 1211 165 15 0 chr1 154103804 154104010 -43091422 - B3 SINE B2 -1 215 7 1 1760 933 112 28 0 chr1 154104053 154104278 -43091154 + (TCTA)n Simple_repeat Simple_repeat 1 231 0 1 1760 1249 47 0 0 chr1 154104352 154104500 -43090932 - B1_Mus1 SINE Alu 0 148 1 1 1760 2622 70 0 6 chr1 154104759 154105103 -43090329 - L1_Mus2 LINE L1 0 6566 6225 1 1760 261 0 0 0 chr1 154105231 154105260 -43090172 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1760 853 104 96 7 chr1 154106517 154106653 -43088779 - B1_Mur2 SINE Alu 0 149 2 1 1760 329 329 113 43 chr1 154106888 154107310 -43088122 + MLT1H1 LTR MaLR 34 543 -36 1 1760 555 286 21 0 chr1 154107825 154107965 -43087467 - RSINE1 SINE B4 -21 144 2 1 1760 216 189 0 0 chr1 154107965 154108002 -43087430 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1760 554 172 0 0 chr1 154108003 154108090 -43087342 - B1_Mur4 SINE Alu -63 87 1 1 1760 322 250 0 123 chr1 154108090 154108120 -43087312 - MT2B LTR ERVL -447 154 139 1 1760 1111 131 28 6 chr1 154108156 154108332 -43087100 + B2_Mm2 SINE B2 1 180 -15 1 1760 419 162 10 0 chr1 154108349 154108448 -43086984 + GA-rich Low_complexity Low_complexity 1 100 0 1 1760 390 207 18 0 chr1 154109239 154109403 -43086029 + (TG)n Simple_repeat Simple_repeat 2 168 0 1 1760 191 189 0 43 chr1 154109445 154109561 -43085871 + (TCTG)n Simple_repeat Simple_repeat 4 114 0 1 1760 560 269 38 25 chr1 154109878 154110081 -43085351 + B3A SINE B2 2 202 -14 1 1760 657 216 2 1 chr1 154110101 154110206 -43085226 + (CA)n Simple_repeat Simple_repeat 1 105 0 1 1760 1553 186 168 32 chr1 154110206 154110252 -43085180 - RMER6B LTR ERVK 0 461 419 1 1760 429 20 0 0 chr1 154110252 154110302 -43085130 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1760 1553 186 168 32 chr1 154110302 154110661 -43084771 - RMER6B LTR ERVK -43 418 1 1 1760 657 180 13 4 chr1 154110661 154110879 -43084553 + (CA)n Simple_repeat Simple_repeat 1 219 0 1 1760 1124 102 0 0 chr1 154110916 154111063 -43084369 + B1_Mus1 SINE Alu 1 147 -1 1 1760 191 353 94 21 chr1 154111196 154111387 -43084045 - MIRb SINE MIR -26 242 38 1 1760 292 218 148 0 chr1 154111467 154111568 -43083864 + LTR37A LTR ERV1 51 166 -260 1 1760 307 313 35 35 chr1 154111601 154111773 -43083659 + LTR37A LTR ERV1 227 398 -28 1 1760 209 271 17 0 chr1 154111813 154111872 -43083560 + GA-rich Low_complexity Low_complexity 2 61 0 1 1760 792 314 77 6 chr1 154112220 154112544 -43082888 + Lx8 LINE L1 7118 7464 -9 1 1760 2416 263 19 12 chr1 154113295 154113869 -43081563 + Lx5 LINE L1 6473 7050 0 1 1760 392 304 25 45 chr1 154113996 154114184 -43081248 - Lx7 LINE L1 -1975 5721 5508 2 1760 854 146 21 0 chr1 154114837 154115061 -43080371 + GA-rich Low_complexity Low_complexity 1 228 0 2 1760 363 44 0 0 chr1 154115061 154115106 -43080326 + (GGA)n Simple_repeat Simple_repeat 1 45 0 2 1760 1087 188 33 9 chr1 154116472 154116682 -43078750 + B3 SINE B2 2 216 0 2 1760 456 130 0 0 chr1 154118222 154118314 -43077118 + (GA)n Simple_repeat Simple_repeat 1 92 0 2 1760 514 257 14 20 chr1 154118339 154118486 -43076946 - B4 SINE B4 -132 160 15 2 1760 306 0 0 0 chr1 154118507 154118541 -43076891 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1760 283 290 0 14 chr1 154118541 154118611 -43076821 - PB1D10 SINE Alu -10 107 39 2 1760 22 35 0 0 chr1 154118901 154118930 -43076502 + AT_rich Low_complexity Low_complexity 1 29 0 2 1760 618 257 94 28 chr1 154119606 154119818 -43075614 + MTE2a LTR MaLR 19 244 -135 2 1760 612 0 0 0 chr1 154120451 154120519 -43074913 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1760 907 302 112 30 chr1 154121691 154122142 -43073290 + MT2A LTR ERVL 1 491 -42 2 1760 1553 166 18 48 chr1 154122142 154122472 -43072960 - RLTR46 LTR ERVK 0 320 1 2 1760 907 302 112 30 chr1 154122472 154122511 -43072921 + MT2A LTR ERVL 492 531 -2 2 1760 617 274 67 168 chr1 154123313 154123717 -43071715 + MLT1A0 LTR MaLR 3 365 0 2 1760 396 0 0 0 chr1 154123755 154123799 -43071633 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1760 907 121 64 0 chr1 154123867 154124008 -43071424 + B1_Mur4 SINE Alu 1 150 0 2 1760 1413 100 16 0 chr1 154124012 154124202 -43071230 + B2_Mm2 SINE B2 2 194 -1 2 1760 360 0 0 0 chr1 154125661 154125701 -43069731 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1760 809 184 4 8 chr1 154125702 154125948 -43069484 + GA-rich Low_complexity Low_complexity 1 245 0 2 1760 22 70 0 0 chr1 154126286 154126329 -43069103 + AT_rich Low_complexity Low_complexity 1 43 0 2 1760 331 251 92 63 chr1 154126337 154126511 -43068921 - B3A SINE B2 -18 180 2 2 1760 396 296 70 8 chr1 154126626 154127041 -43068391 - L1M4 LINE L1 -564 5616 5179 2 1760 354 304 26 14 chr1 154127044 154127199 -43068233 - MLT1A LTR MaLR -5 403 232 2 1760 790 257 10 10 chr1 154127225 154127418 -43068014 + B3A SINE B2 6 198 0 2 1760 23 33 0 0 chr1 154128871 154128901 -43066531 + AT_rich Low_complexity Low_complexity 1 30 0 2 1760 348 161 0 0 chr1 154129298 154129360 -43066072 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1760 1078 238 43 4 chr1 154129415 154129672 -43065760 - B4A SINE B4 -22 270 4 2 1760 264 274 103 5 chr1 154129688 154129810 -43065622 - L1MB4 LINE L1 -2 6178 6048 2 1760 664 312 149 42 chr1 154129942 154130419 -43065013 + LTR41B LTR ERVL 5 532 -226 2 1760 785 288 106 42 chr1 154130546 154131009 -43064423 + MT2B LTR ERVL 1 540 -61 2 1760 364 218 4 4 chr1 154131015 154131267 -43064165 + (TG)n Simple_repeat Simple_repeat 1 252 0 2 1760 244 109 22 0 chr1 154131267 154131313 -43064119 + MT2A LTR ERVL 486 532 -1 2 1760 189 107 0 0 chr1 154132570 154132598 -43062834 + (CCCCCT)n Simple_repeat Simple_repeat 5 32 0 2 1760 4435 166 58 1 chr1 154132787 154133581 -43061851 - Lx5 LINE L1 -11 7039 6201 2 1760 396 142 128 12 chr1 154133581 154133783 -43061649 + Lx5 LINE L1 5872 6174 -876 2 1760 246 307 96 59 chr1 154134525 154134660 -43060772 + L2b LINE L2 3024 3163 -212 2 1760 478 260 159 35 chr1 154135192 154135554 -43059878 - MLT1E3 LTR MaLR -3 677 272 2 1760 278 315 83 0 chr1 154135618 154135726 -43059706 - MLT1E3 LTR MaLR -501 153 37 2 1760 743 220 105 27 chr1 154135926 154136183 -43059249 - RMER20B LTR ERVK -228 399 123 2 1760 218 306 42 0 chr1 154136597 154136669 -43058763 - MIRc SINE MIR -125 143 69 2 1760 201 176 0 0 chr1 154139811 154139845 -43055587 + A-rich Low_complexity Low_complexity 1 34 0 2 1761 184 289 39 0 chr1 154141509 154141561 -43053871 - L2a LINE L2 -22 3404 3351 2 1761 8312 47 1 0 chr1 154141951 154143268 -43052164 - L1Md_F2 LINE L1 0 6582 5279 2 1761 707 109 30 0 chr1 154143297 154143421 -43052011 - Lx LINE L1 -1047 5961 5832 2 1761 4396 93 64 14 chr1 154143421 154144064 -43051368 + Lx LINE L1 5975 6649 -5 2 1761 1064 197 121 75 chr1 154144181 154144660 -43050772 + RMER4B LTR ERVK 17 550 -35 2 1761 1209 48 7 0 chr1 154145249 154145395 -43050037 + B1_Mus2 SINE Alu 1 147 0 2 1761 201 0 73 49 chr1 154145395 154145436 -43049996 + (TAAAAA)n Simple_repeat Simple_repeat 3 44 0 2 1761 1492 183 115 18 chr1 154146063 154146402 -43049030 + ORR1D1 LTR MaLR 1 372 -2 2 1761 185 94 31 0 chr1 154146608 154146640 -43048792 + (TCTCCC)n Simple_repeat Simple_repeat 4 36 0 2 1761 417 20 0 0 chr1 154147384 154147434 -43047998 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1761 563 291 69 89 chr1 154147990 154148473 -43046959 + MLT1D LTR MaLR 39 622 -2 2 1761 206 356 31 71 chr1 154149009 154149263 -43046169 + L2a LINE L2 2932 3175 -251 2 1761 426 316 165 38 chr1 154149532 154149848 -43045584 + MLT1G3 LTR MaLR 3 358 -237 2 1761 2268 103 19 9 chr1 154150116 154150440 -43044992 + ORR1A2 LTR MaLR 1 327 0 2 1761 1086 253 37 99 chr1 154150445 154150849 -43044583 - MTE2b LTR MaLR 0 379 1 2 1761 369 318 20 26 chr1 154151467 154151619 -43043813 + MIRb SINE MIR 45 195 -73 2 1761 364 264 70 22 chr1 154152423 154152577 -43042855 + MIR SINE MIR 47 202 -66 2 1761 513 325 7 7 chr1 154152734 154152889 -43042543 + RSINE1 SINE B4 1 155 -10 2 1761 27 0 0 0 chr1 154152898 154152925 -43042507 + AT_rich Low_complexity Low_complexity 1 27 0 2 1761 22 0 0 0 chr1 154153075 154153097 -43042335 + AT_rich Low_complexity Low_complexity 1 22 0 2 1761 394 244 0 0 chr1 154153104 154153182 -43042250 - ID4_ SINE ID -4 79 2 2 1761 255 200 0 0 chr1 154153426 154153471 -43041961 + B1_Mus1 SINE Alu 1 45 -103 2 1761 3525 62 17 8 chr1 154154029 154154497 -43040935 - L1_Mus3 LINE L1 -1 6637 6166 2 1761 343 330 85 52 chr1 154154609 154154820 -43040612 - MLT1J1 LTR MaLR -192 252 35 2 1761 391 294 37 37 chr1 154155831 154156018 -43039414 + ORR1E LTR MaLR 6 192 -167 2 1761 243 364 0 0 chr1 154156680 154156856 -43038576 + CT-rich Low_complexity Low_complexity 3 178 0 2 1761 1395 69 21 5 chr1 154157960 154158150 -43037282 + B2_Mm1t SINE B2 1 193 0 2 1761 435 296 81 31 chr1 154158355 154158616 -43036816 + L1M4 LINE L1 2603 2876 -3270 2 1761 554 294 14 7 chr1 154158675 154158822 -43036610 + RSINE1 SINE B4 1 148 -17 2 1761 28 29 0 0 chr1 154158857 154158892 -43036540 + AT_rich Low_complexity Low_complexity 1 35 0 2 1761 294 311 46 28 chr1 154158900 154159009 -43036423 + PB1D10 SINE Alu 7 117 0 2 1761 1135 291 107 16 chr1 154159034 154159726 -43035706 + L1M4 LINE L1 3069 3823 -2323 2 1761 1033 262 61 6 chr1 154159758 154160069 -43035363 - MTE2b LTR MaLR -43 336 9 2 1761 2188 275 92 3 chr1 154160077 154160719 -43034713 - MTE2b-int LTR MaLR -12 1568 870 2 1761 1567 139 38 76 chr1 154160720 154161011 -43034421 + ORR1A4 LTR MaLR 1 282 -47 2 1761 3087 73 0 10 chr1 154161011 154161411 -43034021 + MTA_Mm LTR MaLR 1 396 0 2 1761 7791 73 9 68 chr1 154161411 154162579 -43032853 + MTA_Mm-int LTR MaLR 1 1098 0 2 1761 3178 68 0 10 chr1 154162579 154162979 -43032453 + MTA_Mm LTR MaLR 1 396 0 2 1761 1567 139 38 76 chr1 154162979 154163027 -43032405 + ORR1A4 LTR MaLR 283 327 -2 2 1761 730 294 104 26 chr1 154163027 154163292 -43032140 - MTE2b-int LTR MaLR -707 873 588 2 1761 293 200 39 39 chr1 154163292 154163370 -43032062 - ORR1D1 LTR MaLR 0 374 297 2 1761 2928 272 82 65 chr1 154163358 154164824 -43030608 - ORR1D1-int LTR MaLR -18 1491 1 2 1761 1543 174 140 24 chr1 154164824 154164948 -43030484 - ORR1D1 LTR MaLR 0 374 244 2 1761 186 43 0 0 chr1 154164948 154164971 -43030461 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 2 1761 1543 174 140 24 chr1 154164971 154165181 -43030251 - ORR1D1 LTR MaLR -131 243 3 2 1761 543 301 146 0 chr1 154165181 154165387 -43030045 - MTEa LTR MaLR -141 238 3 2 1761 364 244 65 29 chr1 154165388 154165527 -43029905 + L1M4 LINE L1 3860 4003 -2143 2 1761 10317 64 3 2 chr1 154165529 154167539 -43027893 - L1Md_F2 LINE L1 0 7000 4605 2 1761 1668 282 95 45 chr1 154167676 154168099 -43027333 + L1M4 LINE L1 4186 4650 -1496 2 1761 905 194 114 10 chr1 154168099 154168292 -43027140 + B3 SINE B2 1 213 -3 2 1761 7439 89 24 2 chr1 154168299 154169300 -43026132 + RLTR13D5 LTR ERVK 1 1023 0 2 1761 1668 282 95 45 chr1 154169300 154169930 -43025502 + L1M4 LINE L1 4656 5300 -846 2 1761 265 330 0 31 chr1 154169947 154170044 -43025388 + B4A SINE B4 8 101 -191 2 1761 633 289 73 0 chr1 154170061 154170265 -43025167 - MTE2b LTR MaLR -160 219 1 2 1761 21 0 0 0 chr1 154170309 154170330 -43025102 + AT_rich Low_complexity Low_complexity 1 21 0 2 1761 251 273 25 38 chr1 154170366 154170446 -43024986 + ID_B1 SINE B4 91 169 -55 2 1761 217 294 57 29 chr1 154170446 154170471 -43024961 + PB1D10 SINE Alu 10 117 0 2 1761 562 315 46 41 chr1 154170508 154170922 -43024510 + L1M4 LINE L1 5318 5733 -446 2 1761 256 301 81 14 chr1 154170912 154171060 -43024372 + L1MB7 LINE L1 5772 5929 -255 2 1761 230 328 147 31 chr1 154171713 154171999 -43023433 + L2a LINE L2 2899 3225 -201 2 1761 519 17 0 0 chr1 154172001 154172061 -43023371 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1761 297 0 0 0 chr1 154172061 154172093 -43023339 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1761 23 0 0 0 chr1 154172315 154172338 -43023094 + AT_rich Low_complexity Low_complexity 1 23 0 2 1761 216 0 0 0 chr1 154172350 154172374 -43023058 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1761 1109 221 30 15 chr1 154172374 154172645 -43022787 + Lx9 LINE L1 7079 7353 -291 2 1761 431 113 14 0 chr1 154172646 154172717 -43022715 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1761 532 219 202 37 chr1 154172717 154172959 -43022473 + Lx9 LINE L1 7343 7624 -20 2 1761 279 0 0 0 chr1 154173076 154173107 -43022325 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1761 1218 211 44 50 chr1 154173543 154173862 -43021570 - MTE2b LTR MaLR -44 335 19 2 1761 21 82 0 0 chr1 154176729 154176778 -43018654 + AT_rich Low_complexity Low_complexity 1 49 0 2 1761 349 255 181 19 chr1 154177984 154178144 -43017288 + MLT2B4 LTR ERVL 184 369 -187 2 1761 185 324 67 29 chr1 154178503 154178608 -43016824 - MIRb SINE MIR -93 175 67 2 1761 1502 64 16 0 chr1 154178961 154179149 -43016283 - B2_Mm1a SINE B2 -2 191 1 2 1761 3331 56 2 0 chr1 154179197 154179592 -43015840 + MTA_Mm LTR MaLR 1 396 0 2 1761 216 135 0 0 chr1 154180172 154180209 -43015223 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2 1761 211 358 33 8 chr1 154180482 154180603 -43014829 + MIR3 SINE MIR 35 158 -50 3 1761 214 150 0 77 chr1 154180701 154180766 -43014666 + T-rich Low_complexity Low_complexity 2 61 0 3 1761 3614 190 83 70 chr1 154181060 154181939 -43013493 - RMER19B LTR ERVK -12 890 1 3 1761 345 307 57 21 chr1 154183414 154183554 -43011878 + B1F1 SINE Alu 1 145 -4 3 1761 1070 110 0 0 chr1 154183805 154183951 -43011481 + B1_Mus2 SINE Alu 2 147 0 3 1761 711 182 102 0 chr1 154185008 154185184 -43010248 - B3 SINE B2 -21 195 2 3 1761 333 282 202 0 chr1 154186012 154186175 -43009257 - MER3 DNA MER1_type -5 204 9 3 1761 816 301 97 11 chr1 154186460 154186830 -43008602 + MTD LTR MaLR 18 419 0 3 1761 2218 96 45 3 chr1 154187346 154187660 -43007772 + ORR1A2 LTR MaLR 1 327 0 3 1761 1459 177 11 17 chr1 154187762 154188049 -43007383 + RLTR33 LTR ERVK 1 285 -393 3 1761 3731 139 74 26 chr1 154188049 154188665 -43006767 + RMER19A LTR ERVK 1 661 -76 3 1761 6475 98 41 12 chr1 154188665 154189596 -43005836 - RMER17B LTR ERVK 0 958 1 3 1761 3731 139 74 26 chr1 154189596 154189682 -43005750 + RMER19A LTR ERVK 662 737 0 3 1761 1684 179 42 20 chr1 154189682 154190031 -43005401 + RLTR33 LTR ERVK 280 678 0 3 1761 222 208 0 40 chr1 154190551 154190626 -43004806 + (TTTG)n Simple_repeat Simple_repeat 2 73 0 3 1761 688 207 104 0 chr1 154191598 154191733 -43003699 - B1_Mur2 SINE Alu 0 149 1 3 1761 228 185 0 0 chr1 154192410 154192464 -43002968 + CT-rich Low_complexity Low_complexity 1 54 0 3 1761 345 24 0 0 chr1 154192464 154192506 -43002926 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1761 415 271 182 0 chr1 154193345 154193548 -43001884 + L1MB3 LINE L1 5928 6167 -16 3 1761 303 200 234 9 chr1 154193711 154193822 -43001610 + Lx8 LINE L1 7261 7396 -77 3 1761 312 148 19 0 chr1 154193860 154193914 -43001518 + HAL1-3A_ME LINE L1 1958 2012 -846 3 1761 748 172 12 0 chr1 154193914 154194083 -43001349 + (TA)n Simple_repeat Simple_repeat 2 172 0 3 1761 189 107 0 0 chr1 154194095 154194123 -43001309 + (TATG)n Simple_repeat Simple_repeat 1 28 0 3 1761 804 37 0 0 chr1 154196729 154196836 -42998596 + B1_Mus2 SINE Alu 41 147 0 3 1761 560 295 151 43 chr1 154198546 154198897 -42996535 - MLT1B LTR MaLR -1 389 1 3 1761 318 132 0 0 chr1 154199477 154199530 -42995902 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1761 329 310 0 10 chr1 154199733 154199834 -42995598 + LTR16C LTR ERVL 179 278 -211 3 1761 188 222 111 0 chr1 154199859 154199913 -42995519 + MIRc SINE MIR 110 169 -99 3 1761 380 226 18 89 chr1 154200524 154200636 -42994796 + PB1D9 SINE Alu 4 107 -13 3 1761 611 320 130 11 chr1 154201800 154202170 -42993262 - MLT1J-int LTR MaLR -924 463 50 3 1761 411 21 0 0 chr1 154202758 154202806 -42992626 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1761 243 283 91 38 chr1 154203487 154203619 -42991813 + MLT1A1 LTR MaLR 269 407 -1 3 1761 233 296 0 0 chr1 154203976 154204047 -42991385 - ORR1E LTR MaLR -12 367 297 3 1761 277 275 67 30 chr1 154204077 154204212 -42991220 - ORR1E LTR MaLR -167 192 53 3 1761 2099 131 54 8 chr1 154204230 154204599 -42990833 + ORR1B1 LTR MaLR 1 386 -8 3 1761 426 266 105 32 chr1 154204820 154205010 -42990422 - L1ME3 LINE L1 -223 5939 5736 3 1761 351 150 0 0 chr1 154205049 154205109 -42990323 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1761 485 165 11 0 chr1 154205109 154205200 -42990232 + MT2A LTR ERVL 1 92 -441 3 1761 884 182 45 14 chr1 154205173 154205401 -42990031 + MT2A LTR ERVL 347 594 -7 3 1761 206 192 19 0 chr1 154205404 154205456 -42989976 + (TATG)n Simple_repeat Simple_repeat 1 53 0 3 1761 500 284 59 7 chr1 154205542 154205677 -42989755 - B4A SINE B4 -149 143 2 3 1761 432 0 0 0 chr1 154206095 154206143 -42989289 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1761 683 276 12 12 chr1 154206224 154206393 -42989039 - B3 SINE B2 -42 174 6 3 1761 841 282 135 33 chr1 154206861 154207229 -42988203 + MLT1F LTR MaLR 176 555 -5 3 1761 4002 90 4 6 chr1 154207344 154207892 -42987540 - L1_Mus3 LINE L1 -13 6625 6079 3 1761 3583 67 12 40 chr1 154207892 154208391 -42987041 + L1_Mus3 LINE L1 5625 6109 -527 3 1761 1228 233 129 133 chr1 154209044 154209579 -42985853 - MT2A LTR ERVL 0 533 1 3 1761 348 267 56 0 chr1 154209654 154209744 -42985688 - L2a LINE L2 -5 3421 3327 3 1761 558 0 0 0 chr1 154210195 154210257 -42985175 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 1761 199 54 26 26 chr1 154210647 154210685 -42984747 + (TTATA)n Simple_repeat Simple_repeat 5 42 0 3 1761 185 208 42 0 chr1 154210752 154210800 -42984632 - MIRc SINE MIR -123 145 96 3 1761 750 78 0 0 chr1 154212464 154212566 -42982866 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 1761 897 10 0 0 chr1 154214106 154214208 -42981224 + (TCCC)n Simple_repeat Simple_repeat 2 103 0 3 1761 316 318 111 68 chr1 154214922 154215229 -42980203 + MLT1A LTR MaLR 23 342 -32 3 1761 1196 48 0 33 chr1 154216945 154217097 -42978335 - B1_Mus2 SINE Alu 0 147 1 3 1761 204 78 58 19 chr1 154217419 154217471 -42977961 + T-rich Low_complexity Low_complexity 2 55 0 3 1761 511 205 47 8 chr1 154219399 154219527 -42975905 + B1F1 SINE Alu 9 141 -8 3 1761 652 222 111 0 chr1 154219843 154220014 -42975418 - B3 SINE B2 -7 209 20 3 1761 3326 43 5 2 chr1 154220112 154220507 -42974925 + MTA_Mm LTR MaLR 1 396 0 3 1761 589 192 23 31 chr1 154220537 154220865 -42974567 + GA-rich Low_complexity Low_complexity 1 325 0 3 1761 537 74 74 0 chr1 154220872 154220994 -42974438 + (GA)n Simple_repeat Simple_repeat 2 132 0 3 1761 24 32 0 0 chr1 154221024 154221055 -42974377 + AT_rich Low_complexity Low_complexity 1 31 0 3 1761 231 239 0 0 chr1 154221085 154221173 -42974259 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1761 237 33 0 0 chr1 154222472 154222502 -42972930 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1761 467 264 49 14 chr1 154222913 154223055 -42972377 + B1F SINE Alu 1 147 -2 3 1761 191 261 116 0 chr1 154223413 154223482 -42971950 - L2a LINE L2 -7 3419 3343 3 1761 321 68 0 0 chr1 154223742 154223786 -42971646 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1761 295 60 40 0 chr1 154223797 154223847 -42971585 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1761 427 299 115 36 chr1 154223875 154224180 -42971252 - L2a LINE L2 -925 2494 2166 3 1761 1269 154 19 0 chr1 154225974 154226188 -42969244 - URR1A DNA MER1_type -3 223 6 3 1761 1037 268 61 22 chr1 154226634 154226912 -42968520 - B4A SINE B4 -1 291 3 3 1761 323 0 48 0 chr1 154226924 154226966 -42968466 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 1761 1259 113 11 0 chr1 154227086 154227263 -42968169 - B2_Mm1t SINE B2 -14 179 1 3 1761 1784 219 75 36 chr1 154227633 154228164 -42967268 + RLTR31_Mur LTR ERVK 2 553 0 3 1761 234 0 0 0 chr1 154228210 154228236 -42967196 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1761 1289 27 0 0 chr1 154228459 154228606 -42966826 + B1_Mm SINE Alu 1 147 0 3 1761 438 282 61 50 chr1 154228999 154229197 -42966235 + B4A SINE B4 6 205 -87 3 1761 675 276 54 15 chr1 154229484 154229819 -42965613 + L1M2 LINE L1 3052 3399 -2744 3 1761 326 237 129 0 chr1 154231161 154231273 -42964159 - MER2B DNA MER2_type -51 285 160 3 1761 227 172 16 65 chr1 154232306 154232368 -42963064 - MIR SINE MIR -80 182 124 3 1761 1164 56 0 0 chr1 154232625 154232768 -42962664 + B1_Mm SINE Alu 5 147 0 3 1761 1179 68 0 0 chr1 154234401 154234549 -42960883 + B1_Mus1 SINE Alu 1 148 0 3 1761 222 37 0 0 chr1 154234549 154234576 -42960856 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1761 287 300 68 61 chr1 154234586 154234849 -42960583 + L1MEa LINE L1 798 1062 -5074 3 1761 471 290 29 0 chr1 154234893 154235031 -42960401 + B1F SINE Alu 2 143 -6 3 1761 2698 101 63 26 chr1 154235586 154236014 -42959418 - Lx LINE L1 0 6654 6211 3 1761 1063 102 114 0 chr1 154236034 154236201 -42959231 + B2_Mm2 SINE B2 2 187 -8 3 1761 1407 150 25 0 chr1 154237112 154237352 -42958080 + ORR1A2 LTR MaLR 1 246 -81 3 1761 6404 96 33 3 chr1 154237351 154238333 -42957099 + ORR1A2-int LTR MaLR 953 1963 0 3 1761 2199 117 35 0 chr1 154238333 154238649 -42956783 + ORR1A2 LTR MaLR 1 327 0 3 1761 420 274 94 35 chr1 154238829 154239116 -42956316 + L1MEa LINE L1 4381 4684 -1462 3 1761 990 288 20 44 chr1 154239633 154239974 -42955458 - MLT2D LTR ERVL -76 338 6 3 1761 713 113 17 0 chr1 154240351 154240466 -42954966 - ORR1A4 LTR MaLR 0 329 213 3 1761 4321 161 52 62 chr1 154240466 154241365 -42954067 + RMER19B LTR ERVK 1 890 -12 3 1761 1035 202 124 27 chr1 154241378 154241637 -42953795 - ORR1B1 LTR MaLR -110 284 1 3 1761 1459 69 21 0 chr1 154241682 154241870 -42953562 + B2_Mm1t SINE B2 2 193 0 3 1761 353 301 89 0 chr1 154241932 154242055 -42953377 + B4A SINE B4 1 134 -158 3 1761 4917 215 89 29 chr1 154243223 154243642 -42951790 + ORR1C2-int LTR MaLR 2 426 -944 3 1761 2140 132 88 99 chr1 154243642 154244129 -42951303 - RLTR45 LTR ERVK 0 482 1 3 1761 4917 215 89 29 chr1 154244129 154244796 -42950636 + ORR1C2-int LTR MaLR 427 1125 -245 3 1761 261 98 0 0 chr1 154244796 154244837 -42950595 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1761 4917 215 89 29 chr1 154244837 154245040 -42950392 + ORR1C2-int LTR MaLR 1126 1369 -1 3 1761 1467 184 122 21 chr1 154245044 154245372 -42950060 + ORR1C2 LTR MaLR 5 365 -19 3 1761 374 282 37 37 chr1 154245664 154245800 -42949632 - ID_B1 SINE B4 -2 222 87 3 1761 641 151 8 0 chr1 154246363 154246482 -42948950 + GA-rich Low_complexity Low_complexity 2 121 0 3 1761 869 44 9 0 chr1 154246482 154246596 -42948836 + (GAAAA)n Simple_repeat Simple_repeat 3 117 0 3 1761 432 0 0 0 chr1 154246899 154246947 -42948485 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1761 279 0 0 0 chr1 154248611 154248642 -42946790 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1761 904 258 132 17 chr1 154248843 154249139 -42946293 - MTEa LTR MaLR -38 341 12 3 1761 287 78 20 0 chr1 154249374 154249425 -42946007 + (TTG)n Simple_repeat Simple_repeat 2 53 0 3 1761 1172 51 0 0 chr1 154249425 154249563 -42945869 - B1_Mm SINE Alu -8 139 2 3 1761 620 230 57 31 chr1 154249939 154250132 -42945300 + B3A SINE B2 1 198 0 3 1761 474 18 0 0 chr1 154252064 154252119 -42943313 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1761 231 36 0 0 chr1 154252119 154252146 -42943286 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1761 452 274 9 9 chr1 154252158 154252272 -42943160 - RSINE1 SINE B4 -46 119 6 4 1761 2145 138 159 6 chr1 154252445 154252809 -42942623 + MTC LTR MaLR 2 421 0 4 1761 234 239 49 8 chr1 154252824 154252924 -42942508 - MIR SINE MIR -74 194 88 4 1761 561 165 91 9 chr1 154253413 154253523 -42941909 + B1_Mur2 SINE Alu 1 119 -30 4 1761 228 35 0 0 chr1 154253911 154253940 -42941492 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1761 213 39 0 0 chr1 154254092 154254118 -42941314 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1761 710 208 20 123 chr1 154255315 154255518 -42939914 + B3A SINE B2 1 182 -16 4 1761 1088 161 64 20 chr1 154256138 154256341 -42939091 - B3 SINE B2 -3 213 2 4 1761 354 23 0 0 chr1 154257477 154257520 -42937912 + (CCA)n Simple_repeat Simple_repeat 1 43 0 4 1761 634 224 67 56 chr1 154258273 154258557 -42936875 + L1M2 LINE L1 3071 3357 -2786 4 1761 279 240 19 9 chr1 154258876 154258981 -42936451 + CT-rich Low_complexity Low_complexity 1 106 0 4 1761 405 0 0 0 chr1 154258983 154259028 -42936404 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1761 1630 147 101 20 chr1 154259080 154259386 -42936046 - Lx4A LINE L1 -2 7056 6726 4 1761 618 263 126 9 chr1 154259409 154259624 -42935808 - B4A SINE B4 -44 248 9 4 1761 454 282 14 40 chr1 154259651 154259799 -42935633 - B1F SINE Alu -5 144 1 4 1761 185 265 0 0 chr1 154260436 154260485 -42934947 + MIR SINE MIR 81 129 -133 4 1761 1397 106 5 0 chr1 154260494 154260688 -42934744 + ORR1A2 LTR MaLR 1 195 -132 4 1761 2559 40 12 0 chr1 154260688 154261016 -42934416 - IAPEY_LTR LTR ERVK 0 385 54 4 1761 1034 73 0 0 chr1 154261017 154261153 -42934279 + ORR1A2 LTR MaLR 191 326 0 4 1761 287 273 0 25 chr1 154261253 154261332 -42934100 - MER5B DNA MER1_type -101 77 1 4 1761 258 235 67 45 chr1 154262859 154262948 -42932484 - Lx8 LINE L1 -375 7098 7008 4 1761 809 187 14 21 chr1 154263246 154263388 -42932044 - B1_Mur1 SINE Alu -5 144 4 4 1761 1175 150 50 36 chr1 154263929 154264150 -42931282 + URR1B DNA MER1_type 2 225 0 4 1761 1401 87 5 0 chr1 154264236 154264421 -42931011 + B2_Mm1t SINE B2 2 187 -6 4 1761 287 78 0 19 chr1 154264422 154264474 -42930958 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 4 1761 340 320 112 47 chr1 154266130 154266363 -42929069 - B4A SINE B4 -44 248 1 4 1761 247 330 85 0 chr1 154267975 154268093 -42927339 + Arthur1B DNA Tip100 545 672 -553 4 1761 848 259 45 19 chr1 154268150 154268414 -42927018 - RMER15 LTR ERVL -3 572 302 4 1761 348 344 49 70 chr1 154268817 154269098 -42926334 + Arthur1B DNA Tip100 838 1109 -116 4 1761 1037 210 9 36 chr1 154269098 154269320 -42926112 + B3 SINE B2 1 216 0 4 1761 348 344 49 70 chr1 154269320 154269425 -42926007 + Arthur1B DNA Tip100 1110 1215 -10 4 220 350 120 13 0 chr1 154271709 154271784 -42923648 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 1762 659 249 17 6 chr1 154272510 154272684 -42922748 + B3A SINE B2 2 177 -21 4 1762 397 234 11 0 chr1 154272872 154272966 -42922466 - RMER1C Other Other -2 1340 1246 4 1762 465 19 0 0 chr1 154272969 154273023 -42922409 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1762 1488 199 59 18 chr1 154274112 154274471 -42920961 - ORR1D1 LTR MaLR 0 421 1 4 1762 399 327 75 26 chr1 154275763 154275934 -42919498 + B3A SINE B2 9 166 -29 4 1762 246 62 0 0 chr1 154275934 154275966 -42919466 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1762 271 339 46 119 chr1 154275966 154275988 -42919444 + B2_Mm2 SINE B2 167 188 -7 4 1762 301 291 120 42 chr1 154276030 154276339 -42919093 - L1MC4 LINE L1 0 8042 7710 4 1762 306 296 96 26 chr1 154276372 154276528 -42918904 - B4 SINE B4 -17 275 109 4 1762 1141 281 71 52 chr1 154276891 154277466 -42917966 + L1M3 LINE L1 4259 4844 -1296 4 1762 5034 201 76 30 chr1 154277476 154277590 -42917842 - Lx9 LINE L1 -3 7641 7480 4 1762 239 79 26 0 chr1 154277590 154277628 -42917804 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1762 5034 201 76 30 chr1 154277628 154278646 -42916786 - Lx9 LINE L1 -165 7479 6458 4 1762 21 36 0 0 chr1 154278747 154278775 -42916657 + AT_rich Low_complexity Low_complexity 1 28 0 4 1762 293 233 138 0 chr1 154278872 154278988 -42916444 - L1MC4 LINE L1 -613 7429 7298 4 1762 468 352 164 8 chr1 154279469 154280059 -42915373 - Kanga1a DNA Tc2 -25 729 48 4 1762 539 235 92 0 chr1 154282050 154282169 -42913263 - B1_Mur1 SINE Alu -6 143 14 4 1762 2883 64 50 22 chr1 154282496 154282896 -42912536 - RLTR10A LTR ERVK 0 411 1 4 1762 5172 70 20 14 chr1 154282896 154283591 -42911841 - RLTR10-int LTR ERVK -1 1986 1288 4 1762 1719 64 0 5 chr1 154283592 154283811 -42911621 - IAP-d-int LTR ERVK -658 5884 5667 4 1762 3659 62 86 12 chr1 154283815 154284301 -42911131 - IAP-d-int LTR ERVK -1015 5527 5006 4 1762 770 185 33 7 chr1 154284301 154284453 -42910979 - IAP-d-int LTR ERVK -6040 502 347 4 1762 2059 81 9 69 chr1 154284447 154284790 -42910642 - IAP-d-int LTR ERVK -1385 602 95 4 1762 2829 71 45 10 chr1 154284790 154285187 -42910245 - RLTR10A LTR ERVK 0 411 1 4 1762 427 340 20 7 chr1 154285592 154285740 -42909692 - MLT1G LTR MaLR -33 558 409 4 1762 286 252 26 43 chr1 154287840 154287956 -42907476 - Tigger5 DNA MER2_type -2 2404 2291 4 1762 316 329 75 26 chr1 154288507 154288813 -42906619 + L1MEe LINE L1 1661 1981 -4185 4 1762 495 299 24 0 chr1 154289612 154289739 -42905693 + ID_B1 SINE B4 91 220 -4 4 1762 200 304 32 11 chr1 154289741 154289775 -42905657 + polypurine Low_complexity Low_complexity 2 34 0 4 1762 1249 34 0 0 chr1 154289775 154289921 -42905511 + B1_Mus2 SINE Alu 2 147 0 4 1762 200 304 32 11 chr1 154289921 154289979 -42905453 + polypurine Low_complexity Low_complexity 35 95 0 4 1762 322 327 126 43 chr1 154290041 154290510 -42904922 + L1MEe LINE L1 3602 4109 -2037 4 1762 382 239 14 42 chr1 154290514 154290658 -42904774 - Lx8 LINE L1 -1 7472 7333 4 1762 326 241 94 8 chr1 154290643 154290835 -42904597 + L1MEe LINE L1 4100 4305 -1841 4 1762 189 0 0 0 chr1 154290894 154290915 -42904517 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1762 353 273 53 128 chr1 154290930 154291157 -42904275 - B3 SINE B2 -6 210 1 4 1762 312 291 134 41 chr1 154291261 154291551 -42903881 + L1MEe LINE L1 4351 4667 -1479 4 1762 489 288 38 24 chr1 154292222 154292466 -42902966 + B4A SINE B4 1 281 -11 4 1762 242 29 0 28 chr1 154292621 154292657 -42902775 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 4 1762 768 176 0 29 chr1 154292657 154292797 -42902635 - B1_Mur2 SINE Alu -12 137 2 4 1762 671 255 86 56 chr1 154294435 154294738 -42900694 + L1MA6 LINE L1 5987 6298 -2 4 1762 323 237 0 73 chr1 154295402 154295484 -42899948 + PB1D10 SINE Alu 16 91 -26 4 1762 497 269 0 9 chr1 154297242 154297358 -42898074 + PB1D10 SINE Alu 3 117 0 4 1762 192 357 38 23 chr1 154297809 154297941 -42897491 + MIRb SINE MIR 115 248 -20 4 1762 205 250 0 0 chr1 154298022 154298074 -42897358 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1762 231 167 0 0 chr1 154298790 154298832 -42896600 + (CATG)n Simple_repeat Simple_repeat 1 42 0 4 1762 528 318 130 14 chr1 154299019 154299303 -42896129 - MER2 DNA MER2_type -23 322 6 4 1762 469 242 229 14 chr1 154300347 154300557 -42894875 - Lx8 LINE L1 -6 7467 7213 4 1762 1073 325 41 3 chr1 154300761 154301153 -42894279 - Lx8 LINE L1 -352 7121 6715 4 1762 477 0 0 0 chr1 154302243 154302296 -42893136 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1762 1043 316 83 7 chr1 154302326 154302781 -42892651 + L1MB8 LINE L1 5646 6135 -43 4 1762 883 258 117 62 chr1 154303009 154303394 -42892038 + MTD LTR MaLR 1 406 -13 4 1762 201 74 0 0 chr1 154303661 154303688 -42891744 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1762 231 329 27 0 chr1 154303719 154303792 -42891640 + MER102c DNA MER1_type 111 185 -146 4 1762 3819 189 33 12 chr1 154304670 154305420 -42890012 - Lx7 LINE L1 -329 7367 6602 4 1762 405 0 0 0 chr1 154305666 154305711 -42889721 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1762 237 65 0 0 chr1 154305961 154305992 -42889440 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1762 405 332 64 43 chr1 154306870 154307291 -42888141 - L1M4c LINE L1 -4015 2369 1940 4 1762 1457 211 92 3 chr1 154307458 154307815 -42887617 + MTD LTR MaLR 18 406 -13 4 1762 420 329 71 0 chr1 154308006 154308176 -42887256 - MLT1A1 LTR MaLR -11 397 216 4 1762 361 241 38 0 chr1 154308433 154308512 -42886920 - ID4_ SINE ID 0 83 2 4 1762 12155 13 0 0 chr1 154309928 154312006 -42883426 - L1Md_T LINE L1 0 6582 4505 4 1762 255 125 27 14 chr1 154312231 154312304 -42883128 + T-rich Low_complexity Low_complexity 4 77 0 4 1762 1029 90 7 20 chr1 154312312 154312459 -42882973 - B1_Mus1 SINE Alu 0 148 4 4 1762 1199 133 154 0 chr1 154312647 154312842 -42882590 + URR1A DNA MER1_type 2 226 0 4 1762 21 36 0 0 chr1 154313101 154313129 -42882303 + AT_rich Low_complexity Low_complexity 1 28 0 4 1762 5969 51 0 21 chr1 154313913 154314658 -42880774 - L1_Mus1 LINE L1 0 6567 5839 4 1762 234 105 0 0 chr1 154314739 154314777 -42880655 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 4 1762 327 259 118 70 chr1 154314777 154314949 -42880483 - B3A SINE B2 -36 180 1 4 1762 22 0 0 0 chr1 154315514 154315536 -42879896 + AT_rich Low_complexity Low_complexity 1 22 0 4 1762 403 324 122 96 chr1 154316209 154316749 -42878683 - MLT2B3 LTR ERVL 0 554 1 4 1762 225 0 0 0 chr1 154316892 154316917 -42878515 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1762 468 0 0 0 chr1 154318382 154318434 -42876998 + (TTA)n Simple_repeat Simple_repeat 1 52 0 4 1762 195 162 0 0 chr1 154318566 154318603 -42876829 + GA-rich Low_complexity Low_complexity 3 39 0 4 1762 745 207 82 5 chr1 154320955 154321149 -42874283 - ORR1C2 LTR MaLR -1 383 175 4 1762 213 29 53 79 chr1 154321153 154321229 -42874203 + GA-rich Low_complexity Low_complexity 5 78 0 4 1762 519 173 209 80 chr1 154321232 154321364 -42874068 - ORR1C2 LTR MaLR -188 186 32 4 1762 2286 40 0 25 chr1 154321364 154321672 -42873760 - L1_Mus1 LINE L1 0 6567 6287 4 1762 519 173 209 80 chr1 154321672 154321701 -42873731 - ORR1C2 LTR MaLR -343 31 4 4 1762 26 0 0 0 chr1 154321830 154321856 -42873576 + AT_rich Low_complexity Low_complexity 1 26 0 4 1762 2193 93 43 40 chr1 154323927 154324253 -42871179 - ORR1A2 LTR MaLR 0 327 1 4 1762 4597 6 0 0 chr1 154324663 154325156 -42870276 + MT2_Mm LTR ERVL 1 493 0 4 1762 48778 17 0 0 chr1 154325156 154330515 -42864917 + MERVL-int LTR ERVL 1 5360 -125 4 1762 354 167 46 35 chr1 154330515 154330602 -42864830 + ORR1A3-int LTR MaLR 553 640 -1323 4 1762 321 0 0 0 chr1 154330602 154330640 -42864792 + MERVL-int LTR ERVL 5448 5485 0 4 1762 4597 6 0 0 chr1 154330640 154331133 -42864299 + MT2_Mm LTR ERVL 1 493 0 4 1762 200 311 0 16 chr1 154331165 154331227 -42864205 + MIRm SINE MIR 210 270 -6 5 1762 279 353 26 20 chr1 154331433 154331586 -42863846 - MIR SINE MIR 0 262 109 5 1762 291 54 0 0 chr1 154332724 154332761 -42862671 + (CAGCC)n Simple_repeat Simple_repeat 2 38 0 5 1762 216 320 92 10 chr1 154334127 154334150 -42861282 + MamSINE1 SINE tRNA 40 62 -228 5 1762 378 0 0 0 chr1 154334150 154334192 -42861240 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1762 216 320 92 10 chr1 154334192 154334266 -42861166 + MamSINE1 SINE tRNA 63 143 -147 5 1762 713 239 84 25 chr1 154335016 154335218 -42860214 + B3 SINE B2 2 215 -1 5 1762 450 223 124 41 chr1 154335492 154335637 -42859795 - HAL1 LINE L1 -760 1747 1591 5 1762 845 171 20 14 chr1 154337253 154337401 -42858031 + B1_Mur4 SINE Alu 1 149 -1 5 1762 276 30 0 0 chr1 154337631 154337664 -42857768 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1762 254 364 48 14 chr1 154337681 154337826 -42857606 - MIR SINE MIR 0 262 113 5 1762 447 19 0 0 chr1 154338783 154338835 -42856597 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1762 282 29 0 0 chr1 154338836 154338871 -42856561 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1762 470 328 283 18 chr1 154339393 154340216 -42855216 - L2a LINE L2 -256 3170 2134 5 1762 594 234 39 0 chr1 154340267 154340395 -42855037 + B1F SINE Alu 12 144 -5 5 1762 202 312 26 0 chr1 154340598 154340675 -42854757 - L2a LINE L2 -1610 1809 1731 5 1762 805 148 222 32 chr1 154340781 154340970 -42854462 + URR1A DNA MER1_type 1 225 -1 5 1762 207 368 136 35 chr1 154341122 154341432 -42854000 - L2a LINE L2 -1962 1457 1117 5 1762 455 211 47 28 chr1 154341545 154341652 -42853780 - RMER15 LTR ERVL -466 109 1 5 1762 567 310 147 27 chr1 154341756 154342015 -42853417 - B4A SINE B4 -2 290 1 5 1762 195 339 80 8 chr1 154342472 154342597 -42852835 - MIRb SINE MIR -8 260 127 5 1762 311 313 66 37 chr1 154343019 154343155 -42852277 - HAL1-3A_ME LINE L1 -740 2118 1979 5 1762 367 281 0 0 chr1 154343664 154343746 -42851686 + ID4_ SINE ID 2 83 0 5 1762 373 207 13 44 chr1 154343769 154343998 -42851434 + GA-rich Low_complexity Low_complexity 1 221 0 5 1762 204 40 0 0 chr1 154345110 154345135 -42850297 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 5 1762 249 135 0 0 chr1 154346045 154346097 -42849335 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 5 1762 199 258 186 0 chr1 154346545 154346642 -42848790 - MIRm SINE MIR -88 188 74 5 1762 303 255 27 109 chr1 154347435 154347460 -42847972 - MT2B LTR ERVL -320 281 182 5 1762 498 133 60 12 chr1 154347460 154347544 -42847888 - B1F SINE Alu -44 105 18 5 1762 239 290 47 57 chr1 154347481 154347587 -42847845 - B4A SINE B4 -125 167 63 5 1762 1459 319 144 40 chr1 154347609 154347914 -42847518 - L1M4 LINE L1 -1215 4925 4608 5 1762 201 94 0 0 chr1 154347914 154347946 -42847486 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1762 2094 289 137 36 chr1 154347946 154348227 -42847205 - L1M4 LINE L1 -1533 4607 4259 5 1762 410 36 18 0 chr1 154348227 154348283 -42847149 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1762 2094 273 134 34 chr1 154348283 154349255 -42846177 - L1M4 LINE L1 -1884 4262 3202 5 1762 359 301 24 31 chr1 154350798 154350925 -42844507 - L1ME3A LINE L1 -1 6172 6047 5 1762 423 38 0 0 chr1 154351536 154351589 -42843843 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1762 191 204 0 20 chr1 154352010 154352060 -42843372 + CT-rich Low_complexity Low_complexity 4 52 0 5 1762 414 0 0 0 chr1 154352462 154352508 -42842924 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1762 1556 245 33 33 chr1 154352513 154352583 -42842849 - Lx9 LINE L1 -198 7446 7377 5 1762 2313 86 45 0 chr1 154352583 154352896 -42842536 + ORR1A2 LTR MaLR 1 327 0 5 1762 1556 251 34 32 chr1 154352896 154353231 -42842201 - Lx9 LINE L1 -268 7376 6881 5 1762 190 340 149 0 chr1 154354908 154355002 -42840430 - L3b LINE CR1 -207 275 168 5 1762 189 154 0 0 chr1 154357638 154357677 -42837755 + (TTG)n Simple_repeat Simple_repeat 3 41 0 5 1762 228 122 0 0 chr1 154360357 154360398 -42835034 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1762 189 0 0 0 chr1 154361980 154362001 -42833431 + (C)n Simple_repeat Simple_repeat 1 21 0 5 1762 26 50 0 0 chr1 154364097 154364137 -42831295 + AT_rich Low_complexity Low_complexity 1 40 0 5 1762 444 67 0 0 chr1 154365821 154365881 -42829551 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1762 368 243 0 0 chr1 154367548 154367618 -42827814 + B4 SINE B4 9 78 -214 5 1762 320 0 25 0 chr1 154367623 154367663 -42827769 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1762 528 149 128 10 chr1 154367672 154367774 -42827658 + B3 SINE B2 1 114 -102 5 1762 1083 118 0 0 chr1 154369527 154369796 -42825636 + (CA)n Simple_repeat Simple_repeat 1 269 0 5 1762 288 0 0 0 chr1 154372144 154372176 -42823256 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1762 467 225 51 90 chr1 154373846 154374002 -42821430 - B4A SINE B4 -136 156 7 5 1762 993 45 23 0 chr1 154374160 154374293 -42821139 - L1_Mus1 LINE L1 0 6567 6432 5 1762 235 326 29 79 chr1 154374664 154374804 -42820628 + MLT1H LTR MaLR 29 161 -388 5 1762 336 279 149 27 chr1 154375971 154376159 -42819273 + L1MEd LINE L1 4 214 -5905 5 1762 330 266 45 9 chr1 154376374 154376484 -42818948 + L1MEd LINE L1 325 438 -5681 5 1762 1186 27 0 64 chr1 154377048 154377205 -42818227 - B1_Mus2 SINE Alu 0 147 1 5 1762 180 321 70 26 chr1 154377385 154377500 -42817932 + MIR SINE MIR 108 227 -35 5 1762 351 314 195 58 chr1 154377510 154377940 -42817492 - L2a LINE L2 0 3426 2938 5 1762 397 298 178 47 chr1 154378127 154378484 -42816948 - L2b LINE L2 -170 3205 2766 5 1762 22 35 0 0 chr1 154379252 154379281 -42816151 + AT_rich Low_complexity Low_complexity 1 29 0 5 1762 491 218 184 17 chr1 154379611 154379837 -42815595 - MER58B DNA MER1_type 0 341 78 5 1762 369 183 27 27 chr1 154380935 154381008 -42814424 + ID4_ SINE ID 1 73 -10 5 1762 195 100 0 0 chr1 154381243 154381273 -42814159 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1762 246 357 82 15 chr1 154381956 154382131 -42813301 + L2b LINE L2 3152 3318 -69 5 1762 1521 54 5 5 chr1 154382330 154382517 -42812915 + B2_Mm2 SINE B2 1 187 -8 5 1762 305 273 102 30 chr1 154382713 154382879 -42812553 - L1MA8 LINE L1 0 6291 6114 5 1762 268 343 0 0 chr1 154383004 154383071 -42812361 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 5 1762 551 301 55 16 chr1 154385507 154385760 -42809672 + L1MD3 LINE L1 7508 7770 -225 5 1762 249 210 0 0 chr1 154388351 154388413 -42807019 + CT-rich Low_complexity Low_complexity 1 62 0 5 1762 649 187 104 7 chr1 154388413 154388548 -42806884 - B1_Mur1 SINE Alu -1 148 1 5 1762 319 288 70 115 chr1 154388718 154388764 -42806668 + B4A SINE B4 56 184 -108 5 1762 463 236 84 0 chr1 154388764 154388898 -42806534 + B1F SINE Alu 1 149 0 5 1762 319 288 70 115 chr1 154388898 154388918 -42806514 + B4A SINE B4 185 246 -46 5 1762 267 327 80 26 chr1 154390162 154390275 -42805157 - AmnSINE1 SINE SINE -246 329 211 5 1762 3435 33 5 0 chr1 154391710 154392104 -42803328 + MTA_Mm LTR MaLR 1 396 0 5 1762 21 0 0 0 chr1 154392167 154392188 -42803244 + AT_rich Low_complexity Low_complexity 1 21 0 5 1762 249 293 85 0 chr1 154392451 154392533 -42802899 + MIR SINE MIR 50 138 -70 5 1762 287 264 108 132 chr1 154393201 154393367 -42802065 - B3A SINE B2 0 198 37 5 1762 540 223 29 0 chr1 154394007 154394110 -42801322 - B1_Mur1 SINE Alu -18 131 26 5 1762 298 304 50 12 chr1 154394293 154394373 -42801059 + MTEb LTR MaLR 37 119 -260 5 1762 937 175 9 88 chr1 154394373 154394599 -42800833 + ORR1C2 LTR MaLR 1 208 -166 5 1762 1156 89 0 0 chr1 154394600 154394746 -42800686 + B1_Mus1 SINE Alu 2 147 -1 5 1762 406 59 0 0 chr1 154394749 154394800 -42800632 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 5 1762 671 112 9 0 chr1 154394800 154394907 -42800525 + (GGAAA)n Simple_repeat Simple_repeat 4 111 0 5 1762 1166 49 21 0 chr1 154394914 154395058 -42800374 + B1_Mm SINE Alu 1 147 0 5 1762 955 189 40 11 chr1 154395097 154395274 -42800158 + ORR1C2 LTR MaLR 202 383 -1 5 1762 1011 286 57 4 chr1 154395274 154395525 -42799907 + MTEb LTR MaLR 115 379 0 5 1762 300 330 38 85 chr1 154397461 154397673 -42797759 + HAL1-3A_ME LINE L1 2239 2440 -418 5 1762 204 277 0 0 chr1 154397688 154397735 -42797697 + GA-rich Low_complexity Low_complexity 3 49 0 5 1762 1015 112 93 0 chr1 154399003 154399164 -42796268 - B2_Mm2 SINE B2 -19 176 1 5 1762 792 188 7 27 chr1 154399963 154400111 -42795321 - B1_Mur2 SINE Alu 0 149 5 5 1762 21 0 0 0 chr1 154400616 154400637 -42794795 + AT_rich Low_complexity Low_complexity 1 21 0 5 1763 282 95 0 0 chr1 154402897 154402939 -42792493 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 5 1763 186 43 0 0 chr1 154403439 154403462 -42791970 + (CAG)n Simple_repeat Simple_repeat 3 25 0 5 1763 189 336 87 43 chr1 154404288 154404403 -42791029 + MIR3 SINE MIR 89 208 0 5 1763 256 277 197 25 chr1 154404945 154405067 -42790365 + RSINE1 SINE B4 4 146 -19 5 1763 935 266 21 39 chr1 154405744 154406026 -42789406 - B4 SINE B4 -11 281 5 5 1763 212 295 48 60 chr1 154406049 154406132 -42789300 + ID SINE ID 2 83 -141 5 1763 665 115 106 0 chr1 154406604 154406717 -42788715 + B1_Mur4 SINE Alu 5 129 -21 5 1763 398 278 11 74 chr1 154406852 154407027 -42788405 + Lx8 LINE L1 7308 7471 -2 5 1763 459 0 0 0 chr1 154407584 154407635 -42787797 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1763 718 226 107 5 chr1 154411639 154411835 -42783597 + B3 SINE B2 1 216 0 5 1763 237 250 284 0 chr1 154412180 154412268 -42783164 - PB1D7 SINE Alu -4 116 4 5 1763 207 0 0 0 chr1 154412291 154412314 -42783118 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1763 972 146 0 0 chr1 154412314 154412451 -42782981 - B1_Mus2 SINE Alu -10 137 1 5 1763 232 286 71 12 chr1 154412519 154412604 -42782828 + LTR90B LTR LTR 690 779 -17 5 1763 289 377 13 25 chr1 154414187 154414345 -42781087 - MIR3 SINE MIR -19 189 34 5 1763 530 278 45 0 chr1 154414520 154414653 -42780779 - MER20 DNA MER1_type -63 156 18 6 1763 1081 119 160 0 chr1 154415869 154416063 -42779369 - URR1A DNA MER1_type -1 225 1 6 1763 24 77 0 0 chr1 154416499 154416551 -42778881 + AT_rich Low_complexity Low_complexity 1 52 0 6 1763 223 322 144 19 chr1 154416937 154417250 -42778182 + L2 LINE L2 1967 2318 -1101 6 1763 206 309 64 0 chr1 154417509 154417603 -42777829 + L2 LINE L2 2689 2788 -631 6 1763 867 209 115 0 chr1 154418285 154418476 -42776956 - B3 SINE B2 -2 214 2 6 1763 385 242 33 0 chr1 154418554 154418645 -42776787 - PB1D10 SINE Alu -19 98 5 6 1763 198 0 0 0 chr1 154418940 154418962 -42776470 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1763 396 156 13 13 chr1 154419596 154419674 -42775758 + ID4_ SINE ID 1 78 -5 6 1763 225 0 0 0 chr1 154420023 154420048 -42775384 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1763 313 285 109 7 chr1 154421416 154421554 -42773878 + L2a LINE L2 3111 3262 -164 6 1763 724 163 258 22 chr1 154421772 154421954 -42773478 - URR1B DNA MER1_type 0 225 1 6 1763 356 340 69 23 chr1 154422932 154423149 -42772283 - MIR SINE MIR -23 239 13 6 1763 485 290 153 12 chr1 154423323 154423571 -42771861 + B4A SINE B4 1 283 -9 6 1763 418 284 129 46 chr1 154424471 154424717 -42770715 - B4A SINE B4 -10 282 8 6 1763 293 305 121 40 chr1 154425546 154425720 -42769712 - MLT1D LTR MaLR 0 505 318 6 1763 1046 94 0 0 chr1 154426896 154427034 -42768398 - B1_Mus1 SINE Alu -9 139 2 6 1763 499 255 0 0 chr1 154428104 154428198 -42767234 - PB1D7 SINE Alu -10 110 17 6 1763 258 325 81 4 chr1 154430057 154430215 -42765217 - Arthur1A DNA Tip100 -1 176 1 6 1763 303 260 19 28 chr1 154431328 154431435 -42763997 + MTEb LTR MaLR 273 378 -1 6 1763 249 33 0 0 chr1 154432628 154432658 -42762774 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1763 251 302 0 0 chr1 154433291 154433344 -42762088 - B1F1 SINE Alu -95 54 2 6 1763 198 121 49 49 chr1 154434218 154434279 -42761153 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 6 1763 424 256 88 88 chr1 154435216 154435409 -42760023 + B3A SINE B2 3 195 -3 6 1763 29 0 0 0 chr1 154435410 154435439 -42759993 + AT_rich Low_complexity Low_complexity 1 29 0 6 1763 314 239 8 107 chr1 154435971 154436102 -42759330 + PB1D7 SINE Alu 1 118 -2 6 1763 31 68 0 0 chr1 154436103 154436162 -42759270 + AT_rich Low_complexity Low_complexity 1 59 0 6 1763 201 74 0 0 chr1 154437065 154437092 -42758340 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1763 526 273 0 50 chr1 154437171 154437310 -42758122 + RSINE1 SINE B4 3 134 -31 6 1763 354 61 0 0 chr1 154437319 154437368 -42758064 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1763 299 271 48 83 chr1 154437953 154438098 -42757334 - MER53 DNA hAT -7 186 47 6 1763 301 237 72 0 chr1 154438136 154438233 -42757199 - L1MA8 LINE L1 -27 6273 6170 6 1763 664 266 204 22 chr1 154438293 154438651 -42756781 - L1MA8 LINE L1 -263 6028 5606 6 1763 1042 233 97 72 chr1 154439175 154439536 -42755896 - ORR1D2 LTR MaLR 0 370 1 6 1763 355 219 229 31 chr1 154439695 154439845 -42755587 - LTR48 LTR ERV1 -625 162 1 6 1763 880 269 45 45 chr1 154440559 154440851 -42754581 + B4A SINE B4 1 292 0 6 1763 246 105 0 0 chr1 154440857 154440895 -42754537 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1763 21 36 0 0 chr1 154440920 154440948 -42754484 + AT_rich Low_complexity Low_complexity 1 28 0 6 1763 810 259 29 0 chr1 154441051 154441225 -42754207 + B3A SINE B2 2 180 -18 6 1763 351 189 67 13 chr1 154442278 154442353 -42753079 - PB1 SINE Alu -3 124 46 6 1763 889 206 80 10 chr1 154443107 154443308 -42752124 + B3 SINE B2 1 215 -1 6 1763 604 316 105 0 chr1 154443325 154443534 -42751898 + B4A SINE B4 48 278 -14 6 1763 378 0 0 0 chr1 154443577 154443619 -42751813 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1763 231 61 0 0 chr1 154443727 154443760 -42751672 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6 1763 253 294 105 12 chr1 154445636 154445722 -42749710 - L2a LINE L2 0 3426 3333 6 1763 459 361 41 0 chr1 154446894 154447063 -42748369 - MIR SINE MIR -81 181 6 6 1763 482 298 30 30 chr1 154447551 154447717 -42747715 - Tigger7 DNA MER2_type -1894 597 432 6 1763 221 0 0 33 chr1 154449733 154449763 -42745669 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1763 355 106 0 55 chr1 154449777 154449845 -42745587 - B2_Mm2 SINE B2 -107 109 47 6 1763 1195 81 34 23 chr1 154449911 154450088 -42745344 - B2_Mm1t SINE B2 -14 179 1 6 1763 273 323 39 39 chr1 154450095 154450224 -42745208 - MLT1A1 LTR MaLR -12 396 268 6 1763 522 0 0 0 chr1 154450747 154450805 -42744627 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1763 365 305 49 21 chr1 154451665 154451809 -42743623 - Tigger15a DNA TcMar -80 635 488 6 1763 255 31 0 0 chr1 154452268 154452300 -42743132 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1763 1273 41 0 0 chr1 154452351 154452498 -42742934 + B1_Mm SINE Alu 1 147 0 6 1763 313 312 0 13 chr1 154452651 154452729 -42742703 - B4A SINE B4 -1 291 215 6 1763 333 278 32 32 chr1 154452779 154452872 -42742560 - B4A SINE B4 -5 287 195 6 1763 288 0 0 0 chr1 154452920 154452952 -42742480 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1763 684 229 47 37 chr1 154453127 154453317 -42742115 + B3 SINE B2 19 210 -6 6 1763 422 272 73 44 chr1 154453457 154453661 -42741771 + L3 LINE CR1 2717 2926 -1563 6 1763 205 408 6 31 chr1 154454177 154454339 -42741093 + L3 LINE CR1 3621 3778 -711 6 1763 315 150 0 0 chr1 154455581 154455641 -42739791 + (CATA)n Simple_repeat Simple_repeat 4 63 0 6 1763 801 87 0 0 chr1 154455753 154455868 -42739564 + (CA)n Simple_repeat Simple_repeat 1 115 0 6 1763 440 311 110 0 chr1 154456528 154456737 -42738695 - MER33 DNA MER1_type -3 321 90 6 1763 448 185 52 0 chr1 154457276 154457381 -42738051 + PB1D9 SINE Alu 14 132 -18 6 1763 270 56 0 0 chr1 154457623 154457659 -42737773 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 6 1763 793 220 41 71 chr1 154457829 154458025 -42737407 - ID_B1 SINE B4 -20 204 15 6 1763 232 204 20 0 chr1 154458633 154458682 -42736750 + B1F SINE Alu 97 146 -3 6 1763 437 303 32 8 chr1 154458849 154458972 -42736460 + B1F SINE Alu 24 149 0 6 1763 222 294 176 0 chr1 154460767 154460852 -42734580 - MIRc SINE MIR -116 152 53 6 1763 471 279 90 0 chr1 154461062 154461184 -42734248 - B3A SINE B2 -65 133 1 6 1763 209 359 56 7 chr1 154461959 154462102 -42733330 - MIR SINE MIR -40 222 73 6 1763 434 352 135 30 chr1 154462196 154462492 -42732940 + LTR90A LTR LTR 640 966 -10 6 1763 396 0 0 0 chr1 154462844 154462888 -42732544 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1763 240 35 0 0 chr1 154463376 154463405 -42732027 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1763 507 112 33 11 chr1 154463405 154463495 -42731937 - B1_Mus2 SINE Alu -10 137 46 6 1763 531 0 0 0 chr1 154465501 154465560 -42729872 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 6 1763 1099 184 48 0 chr1 154465636 154465842 -42729590 - B3 SINE B2 0 216 1 6 1763 186 256 0 23 chr1 154466412 154466456 -42728976 - L4 LINE RTE -4 2025 1983 6 1763 185 282 13 66 chr1 154467492 154467568 -42727864 + MIR3 SINE MIR 133 204 -4 6 1763 1063 226 5 5 chr1 154467878 154468083 -42727349 - B3 SINE B2 -10 206 2 6 1763 329 202 195 35 chr1 154468188 154468199 -42727233 - B1F SINE Alu 0 149 142 6 1763 246 32 0 0 chr1 154468199 154468230 -42727202 + (CTG)n Simple_repeat Simple_repeat 1 31 0 6 1763 329 202 195 35 chr1 154468230 154468331 -42727101 - B1F SINE Alu -8 141 19 6 1763 233 387 0 88 chr1 154468678 154468814 -42726618 + MIRb SINE MIR 62 185 -83 6 1763 745 175 0 0 chr1 154469466 154469586 -42725846 + B1_Mus2 SINE Alu 1 120 -27 6 1763 403 324 41 27 chr1 154469586 154469605 -42725827 + B4 SINE B4 112 226 -66 6 1763 437 18 35 0 chr1 154471622 154471679 -42723753 + (GAAAA)n Simple_repeat Simple_repeat 3 61 0 6 1763 23 33 0 0 chr1 154472259 154472289 -42723143 + GC_rich Low_complexity Low_complexity 1 30 0 6 1763 428 218 64 120 chr1 154472804 154472929 -42722503 - PB1D9 SINE Alu 0 120 3 6 1763 378 204 0 111 chr1 154472848 154472947 -42722485 - ID_B1 SINE B4 -69 155 68 6 1763 456 19 0 0 chr1 154473559 154473612 -42721820 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1763 467 326 141 8 chr1 154475049 154475290 -42720142 - B4A SINE B4 -17 275 3 6 1763 302 321 0 0 chr1 154475315 154475396 -42720036 - L1M4 LINE L1 -1818 4328 4248 6 1763 1346 274 109 47 chr1 154475509 154476630 -42718802 + L1MA10 LINE L1 5128 6332 -2 6 1763 416 244 0 0 chr1 154477199 154477281 -42718151 + ID4_ SINE ID 2 83 0 6 1763 22 0 0 0 chr1 154477281 154477303 -42718129 + AT_rich Low_complexity Low_complexity 1 22 0 6 1763 180 292 118 59 chr1 154478089 154478191 -42717241 + MIRc SINE MIR 14 121 -147 6 1763 201 318 112 0 chr1 154478540 154478710 -42716722 + L2c LINE L2 2762 2950 -469 6 1763 196 231 51 0 chr1 154478923 154478962 -42716470 + L2c LINE L2 3273 3313 -74 6 1763 4850 158 71 8 chr1 154478963 154479812 -42715620 - RMER19B LTR ERVK 0 902 1 6 1763 249 241 19 0 chr1 154480150 154480204 -42715228 + B3A SINE B2 1 55 -143 6 1763 23 0 0 0 chr1 154480293 154480316 -42715116 + AT_rich Low_complexity Low_complexity 1 23 0 6 1763 222 207 35 0 chr1 154480649 154480707 -42714725 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1763 1378 105 16 0 chr1 154481059 154481250 -42714182 + B2_Mm2 SINE B2 1 194 -1 6 1763 506 119 12 0 chr1 154481250 154481334 -42714098 + (GA)n Simple_repeat Simple_repeat 1 85 0 6 1763 196 54 0 75 chr1 154481612 154481652 -42713780 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 7 1763 836 193 198 16 chr1 154482365 154482684 -42712748 - MTD LTR MaLR -6 413 2 7 1763 384 59 0 0 chr1 154482876 154482927 -42712505 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 7 1763 496 207 49 14 chr1 154483007 154483149 -42712283 + B1F SINE Alu 1 147 -2 7 1763 238 241 24 60 chr1 154483156 154483240 -42712192 + ID4_ SINE ID 1 81 -2 7 1763 551 283 97 38 chr1 154484310 154484633 -42710799 + MLT2B1 LTR ERVL 141 565 -2 7 1763 251 253 218 0 chr1 154485834 154485921 -42709511 + PB1 SINE Alu 3 108 -19 7 1763 834 263 42 18 chr1 154486365 154486582 -42708850 + ID_B1 SINE B4 2 223 -1 7 1763 867 206 7 0 chr1 154486594 154486749 -42708683 + RSINE1 SINE B4 7 162 -3 7 1763 362 229 254 9 chr1 154487049 154487159 -42708273 + MTE2a LTR MaLR 1 137 -242 7 1763 626 328 91 36 chr1 154487093 154487454 -42707978 + MT2A LTR ERVL 71 451 -82 7 1763 267 200 83 0 chr1 154489973 154490033 -42705399 + L1MC LINE L1 5553 5617 -2265 7 1763 347 334 70 84 chr1 154490161 154490520 -42704912 + L1ME4a LINE L1 5568 5921 -203 7 1763 890 160 194 0 chr1 154490651 154490826 -42704606 - B3 SINE B2 -7 209 1 7 1763 44 56 0 0 chr1 154490920 154490992 -42704440 + AT_rich Low_complexity Low_complexity 1 72 0 7 1763 189 0 0 0 chr1 154491091 154491112 -42704320 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 7 1763 1441 92 0 10 chr1 154491112 154491309 -42704123 - B2_Mm2 SINE B2 0 195 1 7 1763 381 273 72 68 chr1 154491316 154491552 -42703880 + L1ME3B LINE L1 5710 5946 -294 7 1763 446 320 96 59 chr1 154491694 154491966 -42703466 + B4A SINE B4 5 286 -6 7 1763 612 351 40 14 chr1 154492964 154493186 -42702246 + MamSINE1 SINE tRNA 7 234 -56 7 1763 756 114 0 31 chr1 154493449 154493576 -42701856 + B1_Mur3 SINE Alu 27 149 0 7 1763 1168 208 113 52 chr1 154493716 154494099 -42701333 + RLTR20C LTR ERVK 51 534 0 7 1763 409 48 31 16 chr1 154494380 154494444 -42700988 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 7 1763 630 157 112 0 chr1 154494444 154494578 -42700854 - B1_Mur4 SINE Alu 0 150 2 7 1763 545 216 8 0 chr1 154494892 154495026 -42700406 + (TA)n Simple_repeat Simple_repeat 1 135 0 7 1763 609 177 102 17 chr1 154495028 154495276 -42700156 - MT2B LTR ERVL -70 531 222 7 1763 4969 108 24 25 chr1 154496011 154496768 -42698664 - RMER6A LTR ERVK 0 756 1 7 1763 183 100 0 0 chr1 154497210 154497240 -42698192 + (CAAAT)n Simple_repeat Simple_repeat 2 31 0 7 1763 4832 213 87 44 chr1 154497467 154499153 -42696279 + RMER1A Other Other 1 909 -121 7 1763 474 18 0 0 chr1 154499153 154499208 -42696224 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1763 4832 173 100 13 chr1 154499208 154499315 -42696117 + RMER1A Other Other 910 1019 -11 7 1763 876 256 77 113 chr1 154499544 154499932 -42695500 - MTE2a LTR MaLR -5 374 1 7 1763 269 264 81 94 chr1 154500000 154500234 -42695198 + MTEb LTR MaLR 101 331 -48 1 1763 687 181 23 30 chr1 154501171 154501302 -42694130 + B3 SINE B2 1 130 -86 2 1763 558 79 0 0 chr1 154501641 154501717 -42693715 + (TAA)n Simple_repeat Simple_repeat 3 78 0 3 1763 797 232 20 35 chr1 154501737 154501934 -42693498 + B3A SINE B2 3 196 -2 4 1763 762 123 383 0 chr1 154502333 154502487 -42692945 + B3 SINE B2 1 213 -3 5 1763 779 226 11 58 chr1 154502820 154503008 -42692424 + B3A SINE B2 4 182 -16 6 1763 188 326 52 21 chr1 154503197 154503294 -42692138 - MIRc SINE MIR -138 130 31 7 1763 219 200 0 43 chr1 154504760 154504807 -42690625 + G-rich Low_complexity Low_complexity 5 49 0 8 1763 505 243 31 159 chr1 154504843 154505175 -42690257 + ORR1E LTR MaLR 25 349 -30 9 1763 222 186 23 0 chr1 154505261 154505304 -42690128 - B1F SINE Alu -87 62 19 1 1763 591 166 71 7 chr1 154506011 154506151 -42689281 + Lx4A LINE L1 6910 7058 0 1 1763 305 141 14 72 chr1 154506999 154507068 -42688364 + B4A SINE B4 1 65 -227 1 1763 568 165 19 0 chr1 154507085 154507188 -42688244 - ORR1B1 LTR MaLR -289 105 1 1 1763 255 313 0 30 chr1 154507214 154507382 -42688050 + (CCCA)n Simple_repeat Simple_repeat 3 165 0 1 1763 2428 201 69 63 chr1 154507608 154508266 -42687166 + RMER1B Other Other 212 1064 -2 1 1763 4858 46 11 0 chr1 154509114 154509811 -42685621 + L1VL2 LINE L1 820 1524 -2091 1 1763 29 78 0 0 chr1 154509814 154509878 -42685554 + AT_rich Low_complexity Low_complexity 1 64 0 1 1763 2964 19 5 54 chr1 154510005 154510391 -42685041 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1763 8159 80 86 22 chr1 154510391 154511618 -42683814 + IAPEz-int LTR ERVK 8 1313 -5168 1 1763 29293 23 1 2 chr1 154511617 154514894 -42680538 + IAPEz-int LTR ERVK 3210 6481 0 1 1763 2964 19 5 54 chr1 154514894 154515280 -42680152 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1763 362 274 178 33 chr1 154515281 154515533 -42679899 + MER74A LTR ERVL 194 540 -82 1 1763 414 289 105 7 chr1 154515854 154516007 -42679425 + MLT1A0 LTR MaLR 151 318 -47 2 1763 337 236 153 0 chr1 154516506 154516650 -42678782 - Lx7 LINE L1 -20 7676 7511 2 1763 633 58 0 0 chr1 154517428 154517514 -42677918 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1763 297 0 0 0 chr1 154517514 154517546 -42677886 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1763 510 273 25 8 chr1 154518387 154518527 -42676905 + B1F SINE Alu 2 143 -6 2 1763 42 36 0 0 chr1 154518602 154518658 -42676774 + AT_rich Low_complexity Low_complexity 1 56 0 2 1763 6372 127 61 13 chr1 154519000 154519265 -42676167 + Lx2B LINE L1 5890 6155 -845 2 1763 261 0 0 0 chr1 154519265 154519294 -42676138 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1763 6372 127 61 13 chr1 154519294 154520086 -42675346 + Lx2B LINE L1 6156 6998 -2 2 1763 348 343 8 0 chr1 154520548 154520675 -42674757 + L1M5 LINE L1 5458 5585 -588 2 1763 201 94 0 0 chr1 154521580 154521612 -42673820 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1763 1136 75 7 0 chr1 154522287 154522433 -42672999 - B1_Mm SINE Alu 0 147 1 3 1763 702 281 0 0 chr1 154522584 154522751 -42672681 - B3A SINE B2 -31 167 1 3 1763 213 340 0 0 chr1 154522775 154522828 -42672604 + (CGTG)n Simple_repeat Simple_repeat 3 55 0 3 1763 281 26 26 0 chr1 154523578 154523616 -42671816 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1763 198 0 0 0 chr1 154523616 154523638 -42671794 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1763 261 0 0 0 chr1 154523638 154523666 -42671766 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1763 3015 88 29 5 chr1 154523886 154524298 -42671134 + BGLII_Mus LTR ERVK 1 422 0 3 1763 183 325 84 0 chr1 154525486 154525569 -42669863 - MIRb SINE MIR -74 194 105 3 1763 221 0 0 105 chr1 154526095 154526105 -42669327 + (A)n Simple_repeat Simple_repeat 1 10 0 3 1763 1201 48 0 0 chr1 154526105 154526252 -42669180 + B1_Mus2 SINE Alu 1 147 0 3 1763 221 0 0 105 chr1 154526252 154526279 -42669153 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1763 21 0 0 0 chr1 154526706 154526727 -42668705 + AT_rich Low_complexity Low_complexity 1 21 0 4 1763 529 279 74 41 chr1 154527195 154527464 -42667968 - B4A SINE B4 -14 278 1 4 1763 180 283 19 0 chr1 154528460 154528513 -42666919 + MIR SINE MIR 87 140 -68 4 1763 555 221 180 0 chr1 154529254 154529426 -42666006 - B3 SINE B2 0 216 14 4 1763 569 246 0 0 chr1 154530202 154530324 -42665108 + RSINE1 SINE B4 4 125 -40 4 1763 339 25 0 0 chr1 154530324 154530364 -42665068 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1763 366 234 112 45 chr1 154530393 154530527 -42664905 - RSINE1 SINE B4 -20 145 3 4 1763 1051 240 0 0 chr1 154530723 154530927 -42664505 + B3 SINE B2 3 206 -10 4 1763 832 284 59 71 chr1 154531740 154531965 -42663467 + MTEa LTR MaLR 1 226 -153 4 1763 2242 179 96 36 chr1 154531965 154532516 -42662916 - RLTR31A_Mm LTR ERVK 0 584 1 5 1763 832 284 59 71 chr1 154532516 154532627 -42662805 + MTEa LTR MaLR 227 333 -46 4 1763 228 312 138 0 chr1 154533098 154533178 -42662254 - MIRb SINE MIR -136 132 42 5 220 904 295 118 16 chr1 154533259 154533942 -42661490 + L1MA4 LINE L1 5172 5926 -374 5 1764 576 0 0 0 chr1 154534019 154534083 -42661349 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 5 1764 471 48 0 0 chr1 154534135 154534197 -42661235 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1764 228 265 83 12 chr1 154536625 154536709 -42658723 - MIR SINE MIR -160 102 13 5 1764 214 336 50 33 chr1 154537283 154537403 -42658029 + L2c LINE L2 3262 3383 -4 5 1764 835 218 7 0 chr1 154537667 154537814 -42657618 - RSINE1 SINE B4 -14 151 4 5 1764 1267 315 61 32 chr1 154537859 154538550 -42656882 - L1ME1 LINE L1 -68 6111 5401 5 1764 818 307 74 20 chr1 154538666 154538972 -42656460 + MTEa LTR MaLR 1 318 -61 5 1764 900 94 0 0 chr1 154538972 154539100 -42656332 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 6 1764 818 307 74 20 chr1 154539100 154539145 -42656287 + MTEa LTR MaLR 319 370 -9 5 1764 510 126 23 0 chr1 154539346 154539433 -42655999 - B3 SINE B2 -127 89 1 6 1764 487 237 11 10 chr1 154539593 154539719 -42655713 - MTD LTR MaLR -15 404 259 6 1764 308 287 45 30 chr1 154539779 154539912 -42655520 - MTD LTR MaLR -280 139 5 6 1764 1331 122 22 13 chr1 154539996 154540220 -42655212 - URR1A DNA MER1_type 0 226 1 6 1764 237 268 91 35 chr1 154540250 154540393 -42655039 - L1ME1 LINE L1 -1258 4888 4738 5 1764 1092 42 0 89 chr1 154540431 154540589 -42654843 - B1_Mus2 SINE Alu -2 145 2 6 1764 248 213 16 32 chr1 154540885 154540948 -42654484 - B4A SINE B4 -21 271 210 6 1764 751 85 8 8 chr1 154541040 154541171 -42654261 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 1764 615 229 19 31 chr1 154541174 154541336 -42654096 - B3A SINE B2 -38 160 1 6 1764 804 265 40 18 chr1 154541339 154541566 -42653866 - B4A SINE B4 -60 232 1 6 1764 438 270 88 56 chr1 154541846 154542062 -42653370 + RMER15 LTR ERVL 338 560 -15 6 1764 25 51 0 0 chr1 154543036 154543075 -42652357 + AT_rich Low_complexity Low_complexity 1 39 0 6 1764 2416 189 80 58 chr1 154543292 154543886 -42651546 + Lx9 LINE L1 6995 7601 -43 7 1764 2285 69 26 97 chr1 154543886 154544238 -42651194 + ORR1A2 LTR MaLR 1 327 0 7 1764 2416 189 80 58 chr1 154544238 154544279 -42651153 + Lx9 LINE L1 7602 7643 -1 7 1764 23 0 0 0 chr1 154544281 154544304 -42651128 + AT_rich Low_complexity Low_complexity 1 23 0 7 1764 824 200 7 0 chr1 154544375 154544520 -42650912 + B1_Mur2 SINE Alu 4 149 0 7 1764 440 132 0 13 chr1 154544696 154544773 -42650659 - ORR1D1 LTR MaLR 0 374 299 7 1764 948 167 0 13 chr1 154544830 154544982 -42650450 + B1_Mur4 SINE Alu 1 150 0 7 1764 442 296 109 49 chr1 154545109 154545393 -42650039 + Lx8 LINE L1 7173 7473 0 7 1764 2254 46 20 0 chr1 154545970 154546275 -42649157 + MTB LTR MaLR 81 391 -9 7 1764 433 246 201 48 chr1 154546493 154546558 -42648874 + MLT2B4 LTR ERVL 5 74 -482 7 1764 862 201 113 31 chr1 154546558 154546753 -42648679 + B3 SINE B2 1 211 -5 7 1764 433 232 212 29 chr1 154546753 154547022 -42648410 + MLT2B4 LTR ERVL 75 500 -56 7 1764 665 24 12 0 chr1 154547053 154547136 -42648296 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 8 1764 190 344 53 38 chr1 154547565 154547698 -42647734 + MIRb SINE MIR 47 181 -87 8 1764 947 294 92 0 chr1 154548847 154549174 -42646258 - MLT1A0 LTR MaLR -8 357 1 8 1764 1173 57 0 0 chr1 154549557 154549697 -42645735 + B1_Mus2 SINE Alu 2 141 -6 8 1764 216 0 0 0 chr1 154549697 154549721 -42645711 + (CTAA)n Simple_repeat Simple_repeat 3 26 0 8 1764 504 0 0 0 chr1 154549722 154549778 -42645654 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 8 1764 751 261 128 15 chr1 154551672 154551937 -42643495 - MTD LTR MaLR -50 369 75 8 1764 271 268 133 8 chr1 154552150 154552278 -42643154 - MLT1A1 LTR MaLR -264 144 1 8 1764 1109 117 35 12 chr1 154553119 154553292 -42642140 + B2_Mm2 SINE B2 1 177 -18 8 1764 1106 66 0 0 chr1 154553669 154553805 -42641627 + B1_Mm SINE Alu 2 137 -10 8 1764 212 0 0 35 chr1 154553805 154553834 -42641598 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1764 377 260 67 0 chr1 154553842 154553946 -42641486 + PB1D7 SINE Alu 10 120 0 9 1764 235 323 0 0 chr1 154554632 154554697 -42640735 + PB1D10 SINE Alu 47 111 -6 9 1764 285 237 175 28 chr1 154554879 154555022 -42640410 - L2a LINE L2 0 3426 3263 9 1764 195 328 248 24 chr1 154555323 154555791 -42639641 - L2a LINE L2 -558 2861 2289 9 1764 379 265 136 40 chr1 154555820 154555997 -42639435 + MER105 DNA DNA 9 202 -2 9 1764 267 254 152 24 chr1 154556091 154556216 -42639216 - L2a LINE L2 -1351 2068 1928 9 1764 723 280 16 138 chr1 154556217 154556536 -42638896 + B4A SINE B4 2 281 -11 9 1764 536 107 0 10 chr1 154556557 154556661 -42638771 + (CA)n Simple_repeat Simple_repeat 1 103 0 9 1764 352 152 0 29 chr1 154556910 154556978 -42638454 - B1_Mur1 SINE Alu 0 149 84 9 1764 606 168 119 8 chr1 154557169 154557295 -42638137 + B1_Mus1 SINE Alu 3 142 -6 9 1764 701 145 0 8 chr1 154557465 154557601 -42637831 - B1_Mur1 SINE Alu -6 143 14 9 1764 323 255 10 41 chr1 154559897 154559995 -42635437 + B4A SINE B4 182 276 -16 1 1764 246 32 0 0 chr1 154560004 154560035 -42635397 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1764 403 271 145 26 chr1 154560306 154560499 -42634933 + B3A SINE B2 1 216 0 1 1764 1644 246 151 64 chr1 154560499 154561131 -42634301 + L1M2 LINE L1 4297 4969 -1174 1 1764 180 0 0 0 chr1 154561131 154561151 -42634281 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1764 1644 246 151 64 chr1 154561151 154561484 -42633948 + L1M2 LINE L1 4970 5346 -797 1 1764 216 0 0 0 chr1 154561484 154561508 -42633924 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1764 1644 253 174 34 chr1 154561508 154561901 -42633531 + L1M2 LINE L1 5347 5821 -491 1 1764 701 200 194 5 chr1 154561907 154562118 -42633314 + ORR1E LTR MaLR 1 251 -108 1 1764 808 148 77 6 chr1 154562139 154562309 -42633123 + URR1A DNA MER1_type 1 182 -44 1 1764 1418 216 183 12 chr1 154562310 154562642 -42632790 + Lx9 LINE L1 7130 7509 -135 1 1764 252 0 0 0 chr1 154562642 154562670 -42632762 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1764 1418 216 183 12 chr1 154562670 154562769 -42632663 + Lx9 LINE L1 7510 7635 -9 1 1764 321 176 71 0 chr1 154563006 154563091 -42632341 - L1MA5 LINE L1 0 6300 6210 1 1764 550 230 6 6 chr1 154563249 154563424 -42632008 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1764 934 192 56 17 chr1 154563431 154563882 -42631550 - RMER17C LTR ERVK -8 402 1 1 1764 195 167 0 0 chr1 154563887 154563929 -42631503 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1764 246 194 0 0 chr1 154564963 154565030 -42630402 + (CAGGA)n Simple_repeat Simple_repeat 3 69 0 1 1764 474 18 0 0 chr1 154565206 154565261 -42630171 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1 1764 289 240 48 9 chr1 154565505 154565610 -42629822 + PB1D7 SINE Alu 11 119 -1 1 1764 22 0 0 0 chr1 154566892 154566914 -42628518 + AT_rich Low_complexity Low_complexity 1 22 0 1 1764 790 84 0 32 chr1 154567196 154567319 -42628113 + B1_Mur4 SINE Alu 30 148 -2 1 1764 418 180 89 10 chr1 154567420 154567521 -42627911 + PB1D10 SINE Alu 9 117 0 1 1764 283 238 191 0 chr1 154568089 154568194 -42627238 - L2 LINE L2 -1015 2404 2280 1 1764 2658 97 62 5 chr1 154568610 154568994 -42626438 - RLTR9E LTR ERVK -2 407 2 1 1764 863 241 9 23 chr1 154569148 154569365 -42626067 + B3 SINE B2 3 216 0 1 1764 1121 75 0 39 chr1 154569597 154569750 -42625682 - B1_Mus2 SINE Alu 0 147 1 1 1764 6978 26 11 4 chr1 154569754 154570565 -42624867 - L1Md_F3 LINE L1 0 6584 5768 1 1764 5047 44 0 0 chr1 154570565 154571161 -42624271 + L1Md_F3 LINE L1 5098 5693 -190 1 1764 897 69 0 0 chr1 154571805 154571935 -42623497 + (CA)n Simple_repeat Simple_repeat 2 131 0 1 1764 856 144 20 20 chr1 154571980 154572129 -42623303 + B1_Mur3 SINE Alu 1 149 0 1 1764 339 113 0 0 chr1 154572131 154572184 -42623248 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1 1764 639 52 31 0 chr1 154572179 154572275 -42623157 + (GGAGA)n Simple_repeat Simple_repeat 4 102 0 1 1764 3703 151 98 71 chr1 154572280 154573158 -42622274 - RMER19B LTR ERVK 0 902 1 1 1764 378 0 0 0 chr1 154573554 154573596 -42621836 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1764 224 100 0 24 chr1 154573920 154573961 -42621471 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 1 1764 1258 41 0 0 chr1 154574401 154574548 -42620884 + B1_Mus2 SINE Alu 1 147 0 1 1764 1194 43 0 0 chr1 154574580 154574720 -42620712 + B1_Mm SINE Alu 2 141 -6 1 1764 194 0 39 0 chr1 154574722 154574748 -42620684 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1764 253 306 133 0 chr1 154575157 154575255 -42620177 + PB1D10 SINE Alu 6 116 -1 1 1764 332 164 0 15 chr1 154575255 154575300 -42620132 + polypurine Low_complexity Low_complexity 2 46 0 1 1764 1011 161 0 0 chr1 154575300 154575480 -42619952 + GA-rich Low_complexity Low_complexity 1 180 0 1 1764 332 164 0 15 chr1 154575480 154575502 -42619930 + polypurine Low_complexity Low_complexity 47 68 0 1 1764 34 0 0 0 chr1 154575549 154575583 -42619849 + AT_rich Low_complexity Low_complexity 1 34 0 1 1764 213 94 0 0 chr1 154577892 154577924 -42617508 + (CCG)n Simple_repeat Simple_repeat 2 33 0 1 1764 609 201 94 11 chr1 154578049 154578230 -42617202 - B3A SINE B2 -1 197 2 1 1764 1182 228 209 63 chr1 154578413 154578876 -42616556 - MT2A LTR ERVL -2 531 1 1 1764 188 313 30 0 chr1 154579069 154579136 -42616296 + L3 LINE CR1 3632 3700 -789 1 1764 417 39 0 0 chr1 154579363 154579414 -42616018 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1764 443 192 40 0 chr1 154580605 154580704 -42614728 + B3 SINE B2 110 212 -4 1 1764 477 293 27 97 chr1 154580706 154580867 -42614565 + L1M2 LINE L1 2164 2319 -4530 1 1764 793 183 0 27 chr1 154580867 154581013 -42614419 + B1_Mur4 SINE Alu 1 142 -8 1 1764 477 293 27 97 chr1 154581013 154581150 -42614282 + L1M2 LINE L1 2320 2434 -4415 1 1764 1447 73 0 30 chr1 154581150 154581349 -42614083 - B2_Mm2 SINE B2 -1 194 2 1 1764 477 293 27 97 chr1 154581349 154581420 -42614012 + L1M2 LINE L1 2435 2508 -4341 1 1764 237 300 47 54 chr1 154581927 154582075 -42613357 + L1M2 LINE L1 2504 2650 -4199 1 1764 1263 88 0 0 chr1 154582208 154582507 -42612925 + (GAAA)n Simple_repeat Simple_repeat 1 299 0 1 1764 306 238 139 0 chr1 154582894 154582995 -42612437 + L1M2 LINE L1 5917 6031 -814 1 1764 3960 190 16 31 chr1 154582995 154583732 -42611700 + Lx7 LINE L1 6308 7033 -663 1 1764 207 100 0 0 chr1 154583952 154583982 -42611450 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1764 646 254 51 28 chr1 154584087 154584302 -42611130 - ID_B1 SINE B4 -4 220 1 1 1764 231 261 46 0 chr1 154586257 154586322 -42609110 + L1MC1 LINE L1 89 156 -5980 1 1764 26 0 0 0 chr1 154586362 154586388 -42609044 + AT_rich Low_complexity Low_complexity 1 26 0 1 1764 1528 201 39 28 chr1 154586575 154586934 -42608498 + RLTR14 LTR ERV1 1 363 -19 1 1764 268 182 12 49 chr1 154586955 154587029 -42608403 + L1MC1 LINE L1 3878 3949 -2197 1 1764 1153 76 0 0 chr1 154587029 154587174 -42608258 + B1_Mus2 SINE Alu 3 147 0 1 1764 222 150 0 0 chr1 154587182 154587222 -42608210 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1764 21 0 0 0 chr1 154587262 154587283 -42608149 + AT_rich Low_complexity Low_complexity 1 21 0 1 1764 472 60 30 0 chr1 154587284 154587351 -42608081 + B1_Mus1 SINE Alu 40 108 -40 1 1764 298 214 133 11 chr1 154587286 154587376 -42608056 + B4 SINE B4 126 226 -66 1 1764 966 226 53 28 chr1 154587376 154587659 -42607773 + L1MC1 LINE L1 4368 4657 -1489 1 1764 550 307 33 0 chr1 154587659 154587809 -42607623 + RSINE1 SINE B4 3 157 -8 1 1764 344 303 18 0 chr1 154587823 154587932 -42607500 + L1MC1 LINE L1 4646 4756 -1390 1 1764 1393 74 0 6 chr1 154588511 154588688 -42606744 + B2_Mm2 SINE B2 2 177 -18 1 1764 288 304 80 0 chr1 154588703 154588828 -42606604 + L1MC1 LINE L1 5471 5605 -728 1 1764 480 218 0 0 chr1 154588833 154588920 -42606512 + B1_Mus2 SINE Alu 1 87 -60 1 1764 4229 53 2 0 chr1 154588921 154589432 -42606000 + L1_Mus1 LINE L1 6056 6567 0 1 1764 279 0 0 0 chr1 154589500 154589531 -42605901 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1764 328 130 40 68 chr1 154589531 154589605 -42605827 + B1_Mur3 SINE Alu 78 149 0 1 1764 721 221 19 25 chr1 154589608 154589770 -42605662 + B3 SINE B2 27 187 -29 1 1764 297 0 0 0 chr1 154589770 154589803 -42605629 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1764 1101 248 128 21 chr1 154589848 154590405 -42605027 + L1MC1 LINE L1 5614 6229 -104 1 1764 370 318 46 31 chr1 154590556 154590686 -42604746 + Tigger5 DNA MER2_type 3 134 -2272 1 1764 253 222 32 0 chr1 154591098 154591161 -42604271 + Charlie10 DNA MER1_type 1558 1622 -1200 1 1764 253 0 0 51 chr1 154591331 154591370 -42604062 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1764 958 170 0 0 chr1 154591370 154591517 -42603915 - B1_Mur2 SINE Alu -2 147 1 1 1764 1356 296 80 30 chr1 154591519 154592255 -42603177 + Charlie10 DNA MER1_type 1687 2459 -363 1 1764 1072 38 30 0 chr1 154592613 154592744 -42602688 - B1_Mus1 SINE Alu -12 136 2 1 1764 242 292 0 33 chr1 154592789 154592881 -42602551 + Charlie10 DNA MER1_type 2519 2607 -215 1 1764 790 276 63 40 chr1 154592922 154593132 -42602300 + L1M3 LINE L1 4765 4967 -1173 1 1764 261 83 0 0 chr1 154593132 154593168 -42602264 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1764 790 276 63 40 chr1 154593168 154593308 -42602124 + L1M3 LINE L1 4968 5123 -1017 1 1764 556 264 0 65 chr1 154593848 154593998 -42601434 - ID_B1 SINE B4 -7 217 83 1 1764 1359 83 33 0 chr1 154594466 154594646 -42600786 + B2_Mm2 SINE B2 1 186 -9 1 1764 402 146 58 47 chr1 154595202 154595255 -42600177 + L1MA4 LINE L1 6141 6190 -110 1 1764 2607 74 0 3 chr1 154595255 154595581 -42599851 + ORR1A2 LTR MaLR 1 325 -2 1 1764 402 146 58 47 chr1 154595581 154595613 -42599819 + L1MA4 LINE L1 6191 6227 -73 1 1764 25 31 0 0 chr1 154595635 154595667 -42599765 + AT_rich Low_complexity Low_complexity 1 32 0 1 1764 1241 48 0 0 chr1 154595768 154595915 -42599517 - B1_Mus1 SINE Alu 0 148 2 1 1764 430 254 76 38 chr1 154596129 154596260 -42599172 - B1_Mur1 SINE Alu -13 136 1 1 1764 702 248 82 5 chr1 154596997 154597192 -42598240 + B3 SINE B2 1 210 -6 1 1764 456 19 0 0 chr1 154597216 154597269 -42598163 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 1764 611 266 62 40 chr1 154598986 154599213 -42596219 - B4A SINE B4 0 292 61 1 1764 369 0 0 0 chr1 154599215 154599256 -42596176 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1764 630 191 14 42 chr1 154599751 154599893 -42595539 + B1_Mur1 SINE Alu 12 149 0 1 1764 900 91 106 0 chr1 154600166 154600298 -42595134 + B1_Mus1 SINE Alu 2 147 -1 1 1764 371 248 17 145 chr1 154600609 154600788 -42594644 + ID_B1 SINE B4 69 224 0 1 1764 334 268 7 140 chr1 154600813 154600956 -42594476 + ID_B1 SINE B4 100 223 -1 1 1764 1239 41 0 0 chr1 154601213 154601360 -42594072 + B1_Mm SINE Alu 1 147 0 1 1764 417 39 0 0 chr1 154601360 154601411 -42594021 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1764 202 143 24 0 chr1 154601441 154601483 -42593949 + A-rich Low_complexity Low_complexity 3 45 0 1 1764 1140 62 0 14 chr1 154601619 154601767 -42593665 + B1_Mus2 SINE Alu 1 146 -1 1 1764 635 250 0 6 chr1 154601785 154601966 -42593466 + GA-rich Low_complexity Low_complexity 1 180 0 1 1764 257 135 0 0 chr1 154601970 154602007 -42593425 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1764 264 344 81 0 chr1 154602870 154603056 -42592376 - MIR SINE MIR -58 204 4 1 1764 22 0 0 0 chr1 154604478 154604500 -42590932 + AT_rich Low_complexity Low_complexity 1 22 0 1 1764 1205 176 19 5 chr1 154604675 154604881 -42590551 - B3 SINE B2 -7 209 1 1 1764 413 103 15 0 chr1 154605408 154605476 -42589956 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1764 1185 35 0 14 chr1 154605671 154605815 -42589617 - B1_Mm SINE Alu -5 142 1 2 1764 269 130 77 13 chr1 154605880 154605958 -42589474 + (CATA)n Simple_repeat Simple_repeat 3 85 0 2 1764 184 115 0 71 chr1 154606780 154606836 -42588596 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 1764 656 83 0 20 chr1 154606856 154606954 -42588478 - B1_Mus2 SINE Alu -10 137 42 2 1764 220 295 101 13 chr1 154607121 154607200 -42588232 - B1_Mus2 SINE Alu -61 86 1 2 1764 601 232 58 0 chr1 154607200 154607273 -42588159 - ID SINE ID -136 88 8 2 1764 207 0 0 0 chr1 154607427 154607450 -42587982 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 1764 974 161 0 0 chr1 154607496 154607645 -42587787 + B1_Mur3 SINE Alu 1 149 0 2 1764 603 237 7 0 chr1 154608263 154608402 -42587030 - B1F SINE Alu -9 140 1 2 1764 498 286 126 19 chr1 154608693 154608900 -42586532 - MIR SINE MIR -6 256 28 2 1764 22 35 0 0 chr1 154609205 154609234 -42586198 + AT_rich Low_complexity Low_complexity 1 29 0 2 1764 447 162 0 0 chr1 154609247 154609327 -42586105 + GA-rich Low_complexity Low_complexity 2 81 0 2 1764 252 0 0 0 chr1 154609327 154609355 -42586077 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 2 1764 1388 74 6 0 chr1 154609355 154609531 -42585901 + B2_Mm1t SINE B2 2 178 -15 2 1764 621 40 0 0 chr1 154609531 154609607 -42585825 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 2 1764 252 292 57 44 chr1 154609628 154609765 -42585667 + L1MB3 LINE L1 5664 5804 -379 2 1764 948 217 16 0 chr1 154609765 154609954 -42585478 + B3A SINE B2 1 192 -6 2 1764 735 259 131 24 chr1 154609994 154610322 -42585110 + L1MB3 LINE L1 5793 6155 -28 2 1764 440 286 23 0 chr1 154610337 154610512 -42584920 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 1764 228 231 0 0 chr1 154610665 154610717 -42584715 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1764 413 282 83 8 chr1 154610718 154610850 -42584582 - RSINE1 SINE B4 -23 142 1 2 1764 360 0 0 0 chr1 154611508 154611548 -42583884 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1764 371 303 141 41 chr1 154612320 154612540 -42582892 - MIRc SINE MIR -7 261 20 2 1764 297 0 0 0 chr1 154615087 154615120 -42580312 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1764 332 223 191 0 chr1 154616181 154616275 -42579157 - PB1D9 SINE Alu -8 112 1 2 1764 264 175 97 97 chr1 154616919 154617033 -42578399 - L1M5 LINE L1 -474 5650 5537 2 1764 634 210 14 7 chr1 154617850 154617994 -42577438 + B1_Mur3 SINE Alu 4 148 -1 2 1764 284 293 226 24 chr1 154618015 154618351 -42577081 + L2 LINE L2 2658 3061 -358 2 1764 1132 69 28 0 chr1 154618909 154619053 -42576379 + B1_Mus1 SINE Alu 1 148 0 2 1764 915 78 8 0 chr1 154619169 154619298 -42576134 + B2_Mm1t SINE B2 64 193 0 2 1764 242 294 32 21 chr1 154619299 154619393 -42576039 + L1MB7 LINE L1 5905 5999 -185 2 1764 338 348 85 21 chr1 154619612 154619753 -42575679 + RSINE1 SINE B4 12 161 -4 2 1764 757 128 43 36 chr1 154620251 154620389 -42575043 - B1_Mus2 SINE Alu -6 141 3 2 1764 850 210 142 9 chr1 154623400 154623626 -42571806 - B4A SINE B4 -13 279 24 2 1764 267 232 195 0 chr1 154623630 154623712 -42571720 - B1F SINE Alu -51 98 1 2 1764 218 220 253 0 chr1 154623719 154623810 -42571622 + PB1D10 SINE Alu 1 114 -3 2 1764 1293 87 16 11 chr1 154624455 154624641 -42570791 - B2_Mm1t SINE B2 -5 188 2 2 1764 258 279 35 0 chr1 154624744 154624830 -42570602 + B4A SINE B4 4 92 -200 2 1764 234 290 78 115 chr1 154624830 154624935 -42570497 + B3A SINE B2 4 187 -11 2 1764 231 36 0 0 chr1 154625504 154625532 -42569900 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1764 2142 84 51 3 chr1 154625787 154626099 -42569333 - ORR1A2 LTR MaLR 0 327 1 2 1764 204 40 0 0 chr1 154626929 154626954 -42568478 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1764 555 132 411 0 chr1 154626986 154627137 -42568295 - B3 SINE B2 -3 213 1 2 1764 227 330 45 0 chr1 154627476 154627564 -42567868 - L1M5 LINE L1 -526 5598 5507 2 1764 447 292 16 8 chr1 154627627 154627748 -42567684 - B4A SINE B4 0 292 171 2 1764 1165 282 106 47 chr1 154628358 154628473 -42566959 - MLT1F LTR MaLR -7 541 431 2 1764 208 0 62 0 chr1 154628473 154628505 -42566927 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1764 1163 64 0 0 chr1 154628508 154628649 -42566783 - B1_Mm SINE Alu -6 141 1 2 1764 1165 282 106 47 chr1 154628649 154629039 -42566393 - MLT1F LTR MaLR -118 430 2 2 1764 195 162 0 0 chr1 154629281 154629318 -42566114 + GA-rich Low_complexity Low_complexity 1 37 0 2 1764 349 124 0 22 chr1 154629359 154629425 -42566007 - B2_Mm2 SINE B2 -107 109 47 2 1764 848 103 207 0 chr1 154629438 154629583 -42565849 - B2_Mm1t SINE B2 -14 179 5 2 1764 940 35 0 0 chr1 154629668 154629782 -42565650 - B1_Mm SINE Alu -3 144 31 2 1764 923 316 116 30 chr1 154629798 154630271 -42565161 - MLT1F2 LTR MaLR -44 516 3 2 1764 3108 71 9 30 chr1 154630471 154630907 -42564525 + RMER16 LTR ERVK 107 533 0 2 1764 423 224 99 41 chr1 154630907 154631019 -42564413 + RSINE1 SINE B4 43 161 -4 2 1764 1101 244 77 59 chr1 154631199 154631539 -42563893 - ORR1E LTR MaLR -7 352 7 2 1764 184 100 50 0 chr1 154631613 154631653 -42563779 + (CCCTG)n Simple_repeat Simple_repeat 3 44 0 2 1764 430 272 72 106 chr1 154631683 154631949 -42563483 + RSINE1 SINE B4 48 292 0 2 1764 318 148 0 0 chr1 154631990 154632044 -42563388 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1764 2399 207 48 81 chr1 154632108 154632713 -42562719 + RMER19C LTR ERVK 1 585 -26 2 1764 1314 78 39 11 chr1 154632713 154632894 -42562538 + B2_Mm2 SINE B2 2 187 -8 2 1764 2399 207 48 81 chr1 154632894 154632920 -42562512 + RMER19C LTR ERVK 586 611 0 2 1764 450 36 0 0 chr1 154633148 154633204 -42562228 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1764 2262 183 87 2 chr1 154633713 154634196 -42561236 - RLTR28 LTR ERVL 0 524 1 2 1764 220 203 14 42 chr1 154634883 154634955 -42560477 + G-rich Low_complexity Low_complexity 5 74 0 2 1764 881 151 206 6 chr1 154635841 154636021 -42559411 + B3 SINE B2 1 216 0 2 1764 1542 42 21 0 chr1 154636231 154636421 -42559011 - B2_Mm2 SINE B2 -1 194 1 2 1764 551 239 135 105 chr1 154636912 154637095 -42558337 - B4 SINE B4 -17 275 83 2 1764 1146 54 0 26 chr1 154637095 154637108 -42558324 - B1_Mus2 SINE Alu 0 147 138 2 1764 188 0 74 0 chr1 154637108 154637135 -42558297 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1764 1146 54 0 26 chr1 154637135 154637272 -42558160 - B1_Mus2 SINE Alu -10 137 1 2 1764 551 239 135 105 chr1 154637272 154637354 -42558078 - B4 SINE B4 -210 82 2 2 1764 721 237 24 53 chr1 154637391 154637600 -42557832 - B3 SINE B2 -9 207 5 2 1764 405 0 0 0 chr1 154637853 154637898 -42557534 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 1764 897 232 67 5 chr1 154638952 154639147 -42556285 - B3 SINE B2 -9 207 1 2 1764 350 271 57 0 chr1 154639212 154639282 -42556150 + RSINE1 SINE B4 4 77 -88 2 1764 236 315 67 11 chr1 154639282 154639302 -42556130 + B3 SINE B2 3 97 -119 2 1764 1097 64 147 0 chr1 154639372 154639528 -42555904 + B2_Mm2 SINE B2 3 181 -14 2 1764 351 84 336 19 chr1 154639574 154639681 -42555751 + B2_Mm2 SINE B2 47 187 -8 2 1764 230 353 67 73 chr1 154640227 154640392 -42555040 - MIRc SINE MIR -83 185 22 2 1764 598 173 9 26 chr1 154640527 154640640 -42554792 - MTD LTR MaLR -78 341 231 2 1764 278 309 110 31 chr1 154640814 154640941 -42554491 - MER45A DNA Tip100 -24 154 18 2 1764 302 323 42 63 chr1 154640948 154641090 -42554342 - RLTR14 LTR ERV1 0 382 244 2 1764 409 55 16 25 chr1 154641261 154641327 -42554105 + B2_Mm2 SINE B2 3 71 -127 2 1764 2208 180 5 57 chr1 154641519 154641862 -42553570 - MTD LTR MaLR 0 419 88 2 1764 183 80 0 0 chr1 154641862 154641887 -42553545 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1764 760 131 66 51 chr1 154641887 154642024 -42553408 - B1_Mur4 SINE Alu -10 140 2 2 1764 2208 180 5 57 chr1 154642024 154642121 -42553311 - MTD LTR MaLR -332 87 2 2 1764 331 330 32 0 chr1 154642255 154642349 -42553083 - PB1D10 SINE Alu -20 97 1 2 1764 382 82 0 0 chr1 154643560 154643609 -42551823 - B1_Mus1 SINE Alu -79 69 21 2 1764 1512 182 47 82 chr1 154643831 154644232 -42551200 + RMER10B LTR ERVL 1 387 -11 2 1764 593 271 35 7 chr1 154644439 154644584 -42550848 - RSINE1 SINE B4 -16 149 1 2 1764 198 0 0 0 chr1 154644665 154644687 -42550745 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1764 213 156 22 0 chr1 154644970 154645015 -42550417 + T-rich Low_complexity Low_complexity 3 48 0 2 1764 394 147 59 0 chr1 154645059 154645127 -42550305 + B1_Mur3 SINE Alu 1 72 -77 2 1764 1185 62 0 14 chr1 154645199 154645347 -42550085 + B1_Mus2 SINE Alu 2 147 0 2 1764 517 142 18 90 chr1 154645664 154645787 -42549645 + B1_Mus2 SINE Alu 9 148 -1 2 1764 239 154 0 0 chr1 154645808 154645847 -42549585 + PB1D9 SINE Alu 11 49 -71 2 1764 243 323 9 122 chr1 154645883 154646112 -42549320 - RMER2 LTR ERV1 -27 540 338 2 1764 397 187 0 0 chr1 154646308 154646383 -42549049 + B1_Mus2 SINE Alu 73 147 0 2 1764 865 81 114 0 chr1 154646586 154646709 -42548723 - B1_Mus1 SINE Alu -11 137 1 2 1764 1507 217 60 44 chr1 154646978 154647411 -42548021 + RMER10A LTR ERVL 2 441 -1 2 1764 1098 236 119 9 chr1 154647490 154647827 -42547605 + MTE2b LTR MaLR 1 374 -5 2 1764 346 243 129 43 chr1 154648366 154648398 -42547034 + ID_B1 SINE B4 91 216 -8 2 1764 370 229 12 12 chr1 154648398 154648482 -42546950 + B1F SINE Alu 58 141 -8 2 1764 359 253 0 0 chr1 154648504 154648579 -42546853 + ID4 SINE ID 1 75 -8 3 1764 980 196 72 0 chr1 154648874 154649068 -42546364 - RLTR31_Mm LTR ERVK -353 208 1 3 1764 854 219 80 94 chr1 154649074 154649361 -42546071 - RMER12 LTR ERVK 0 1322 1040 3 1764 552 30 0 0 chr1 154649393 154649459 -42545973 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1764 261 0 0 0 chr1 154649562 154649591 -42545841 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1764 1297 20 0 0 chr1 154649595 154649742 -42545690 - B1_Mm SINE Alu 0 147 1 3 1764 1667 253 75 81 chr1 154649746 154650559 -42544873 - RMER12 LTR ERVK -1069 779 2 3 1764 477 0 0 0 chr1 154650559 154650612 -42544820 + (CAAAA)n Simple_repeat Simple_repeat 5 57 0 3 1764 4744 178 119 47 chr1 154650678 154651706 -42543726 + RLTR21 LTR ERVK 19 1120 -452 3 1764 1218 62 0 0 chr1 154651736 154651882 -42543550 - B1_Mus2 SINE Alu -1 146 1 3 1764 2595 159 70 20 chr1 154652339 154652841 -42542591 + RLTR11A2 LTR ERVK 1 527 0 3 1764 210 71 0 0 chr1 154653404 154653432 -42542000 + (CTG)n Simple_repeat Simple_repeat 2 29 0 3 1764 183 80 0 0 chr1 154653433 154653458 -42541974 + (GGA)n Simple_repeat Simple_repeat 3 27 0 3 1764 275 322 86 17 chr1 154653640 154653757 -42541675 - PB1 SINE Alu -2 125 1 3 1764 351 136 0 0 chr1 154654057 154654116 -42541316 + (TCC)n Simple_repeat Simple_repeat 2 60 0 3 1764 220 348 35 26 chr1 154654617 154654732 -42540700 + ID_B1 SINE B4 78 193 -31 3 1764 341 278 35 69 chr1 154654629 154654745 -42540687 + PB1D10 SINE Alu 7 118 -31 3 1764 891 27 0 9 chr1 154655842 154655953 -42539479 - B1_Mm SINE Alu 0 147 38 3 1764 331 179 73 49 chr1 154655886 154655968 -42539464 - RLTR25B LTR ERVK -519 509 426 3 1764 736 228 21 0 chr1 154656010 154656155 -42539277 - B1_Mur4 SINE Alu -1 149 2 3 1764 405 309 101 118 chr1 154656175 154656200 -42539232 - B4 SINE B4 0 292 268 3 1764 358 323 42 42 chr1 154656200 154656365 -42539067 - RSINE1 SINE B4 0 165 1 3 1764 405 309 101 118 chr1 154656365 154656417 -42539015 - B4 SINE B4 -25 267 208 3 1764 3317 36 8 5 chr1 154656417 154656812 -42538620 - MTA_Mm LTR MaLR 0 396 1 3 1764 405 309 101 118 chr1 154656812 154657030 -42538402 - B4 SINE B4 -85 207 2 3 1764 298 323 22 73 chr1 154657572 154657583 -42537849 - MIRc SINE MIR -110 158 152 3 1764 671 242 4 142 chr1 154657583 154657829 -42537603 - B3 SINE B2 -4 212 1 3 1764 298 323 22 73 chr1 154657829 154657954 -42537478 - MIRc SINE MIR -117 151 29 3 1764 180 0 0 0 chr1 154658644 154658664 -42536768 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 3 1764 522 70 0 0 chr1 154658921 154658992 -42536440 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1764 1035 130 52 42 chr1 154659495 154659688 -42535744 + B2_Mm2 SINE B2 1 195 0 3 1764 1005 107 0 0 chr1 154659704 154659853 -42535579 + (GGAA)n Simple_repeat Simple_repeat 3 151 0 3 1764 1485 74 5 0 chr1 154660044 154660234 -42535198 - B2_Mm1a SINE B2 -1 192 2 3 1764 417 100 14 0 chr1 154660239 154660309 -42535123 - B2_Mm1t SINE B2 -4 189 119 3 1764 320 226 147 28 chr1 154660500 154660609 -42534823 - B4A SINE B4 -89 203 82 3 1764 2470 166 65 27 chr1 154660640 154661114 -42534318 - RLTR28 LTR ERVL 0 524 31 3 1764 857 263 5 0 chr1 154661114 154661312 -42534120 - B3 SINE B2 -15 201 3 3 1764 2470 166 65 27 chr1 154661312 154661326 -42534106 - RLTR28 LTR ERVL -494 30 17 3 1764 342 247 24 24 chr1 154661313 154661393 -42534039 - B4A SINE B4 -195 97 18 3 1764 338 143 0 18 chr1 154661393 154661450 -42533982 - ORR1B2 LTR MaLR -1 393 338 3 1764 1053 41 166 0 chr1 154661443 154661588 -42533844 - B2_Mm2 SINE B2 -25 170 2 3 1764 1239 190 126 11 chr1 154661595 154661866 -42533566 - ORR1B2 LTR MaLR -65 302 1 3 1764 23 0 0 0 chr1 154662854 154662877 -42532555 + GC_rich Low_complexity Low_complexity 1 23 0 3 1764 748 200 122 35 chr1 154662918 154663115 -42532317 + ID_B1 SINE B4 1 214 -10 3 1764 189 0 0 0 chr1 154663214 154663235 -42532197 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1764 215 239 13 130 chr1 154664357 154664434 -42530998 + ID4 SINE ID 12 79 -4 3 1764 243 291 0 0 chr1 154664434 154664489 -42530943 + G-rich Low_complexity Low_complexity 4 58 0 3 1764 270 0 0 0 chr1 154664542 154664572 -42530860 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1765 400 252 40 8 chr1 154665348 154665472 -42529960 - MER20 DNA MER1_type -47 172 45 3 1765 1179 55 0 14 chr1 154665892 154666040 -42529392 + B1_Mus2 SINE Alu 2 147 0 3 1765 234 125 0 0 chr1 154666042 154666090 -42529342 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1765 257 224 17 17 chr1 154666093 154666152 -42529280 - Tigger5 DNA MER2_type -54 2352 2294 3 1765 1038 173 74 43 chr1 154666180 154666394 -42529038 + RLTR18B LTR ERVK 19 244 -268 3 1765 468 51 0 0 chr1 154666394 154666453 -42528979 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 1765 1038 173 74 43 chr1 154666453 154666468 -42528964 + RLTR18B LTR ERVK 245 255 -257 3 1765 809 148 36 29 chr1 154666455 154666594 -42528838 - B1_Mus1 SINE Alu -8 140 1 3 1765 1411 175 29 18 chr1 154666599 154666872 -42528560 + RLTR18B LTR ERVK 234 509 -3 3 1765 533 312 32 46 chr1 154666906 154667124 -42528308 - Tigger5 DNA MER2_type -2179 227 13 3 1765 580 275 0 14 chr1 154667127 154667267 -42528165 + RSINE1 SINE B4 2 139 -26 3 1765 3354 50 0 2 chr1 154667728 154668125 -42527307 + MTA_Mm LTR MaLR 1 396 0 3 1765 795 231 26 31 chr1 154669212 154669404 -42526028 - B3A SINE B2 -7 191 1 3 1765 334 277 131 154 chr1 154669653 154669828 -42525604 - Lx8 LINE L1 -1098 6375 6205 3 1765 3300 258 45 20 chr1 154669830 154670766 -42524666 + Lx8 LINE L1 6385 7343 -130 3 1765 719 232 0 0 chr1 154670778 154670916 -42524516 + B1_Mur1 SINE Alu 11 148 -1 3 1765 241 224 17 0 chr1 154670951 154671009 -42524423 + Lx8 LINE L1 7383 7441 -32 3 1765 357 229 83 17 chr1 154672012 154672132 -42523300 + L1MB5 LINE L1 5729 5856 -328 3 1765 597 309 83 11 chr1 154672176 154672441 -42522991 + B4A SINE B4 9 292 0 3 1765 599 78 0 11 chr1 154672461 154672552 -42522880 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1765 448 259 65 19 chr1 154672622 154672799 -42522633 + L1MB5 LINE L1 5975 6159 -21 3 1765 360 0 0 0 chr1 154673963 154674003 -42521429 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 1765 1057 98 0 0 chr1 154674006 154674159 -42521273 - B2_Mm2 SINE B2 -39 156 4 3 1765 1268 20 7 0 chr1 154674993 154675139 -42520293 + B1_Mus2 SINE Alu 1 147 0 3 1765 372 119 0 0 chr1 154675139 154675198 -42520234 + (A)n Simple_repeat Simple_repeat 1 59 0 3 1765 313 208 200 65 chr1 154675834 154676004 -42519428 + Tigger7 DNA MER2_type 80 272 -2219 3 1765 369 0 0 0 chr1 154676075 154676116 -42519316 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1765 285 29 0 0 chr1 154676116 154676149 -42519283 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1765 330 272 28 56 chr1 154676312 154676456 -42518976 + RSINE1 SINE B4 11 150 -15 3 1765 483 255 77 19 chr1 154676541 154676697 -42518735 + Tigger7 DNA MER2_type 266 430 -2061 3 1765 1257 73 78 0 chr1 154676727 154676906 -42518526 - B2_Mm2 SINE B2 0 195 3 3 1765 1034 102 0 39 chr1 154676931 154677084 -42518348 - B1_Mus1 SINE Alu 0 148 2 3 1765 248 295 13 0 chr1 154677084 154677162 -42518270 + PB1D7 SINE Alu 11 89 -31 3 1765 207 0 0 0 chr1 154677628 154677651 -42517781 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 3 1765 594 247 89 0 chr1 154678216 154678374 -42517058 + ID_B1 SINE B4 2 173 -51 3 1765 433 218 109 0 chr1 154681728 154681838 -42513594 + RSINE1 SINE B4 3 124 -41 3 1765 408 56 0 0 chr1 154683883 154683937 -42511495 - B1_Mus1 SINE Alu -94 54 1 3 1765 183 42 0 0 chr1 154684217 154684241 -42511191 + (CAAAT)n Simple_repeat Simple_repeat 1 24 0 3 1765 329 134 0 35 chr1 154684633 154684718 -42510714 + A-rich Low_complexity Low_complexity 1 82 0 3 1765 189 107 0 0 chr1 154684951 154684979 -42510453 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1765 651 75 0 0 chr1 154686897 154686990 -42508442 - B1_Mm SINE Alu -54 93 1 3 1765 934 188 43 38 chr1 154687837 154688047 -42507385 + B3 SINE B2 5 215 -1 3 1765 203 88 29 0 chr1 154689321 154689355 -42506077 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1765 572 255 136 55 chr1 154691881 154692101 -42503331 + B4 SINE B4 55 292 0 3 1765 1103 73 0 0 chr1 154692865 154693002 -42502430 + B1_Mus2 SINE Alu 1 137 -10 3 1765 1520 64 5 0 chr1 154693744 154693932 -42501500 - B2_Mm1a SINE B2 -4 189 1 3 1765 481 299 43 7 chr1 154694117 154694255 -42501177 - B1F1 SINE Alu -2 147 5 3 1765 366 329 176 9 chr1 154694490 154694723 -42500709 + B4A SINE B4 9 280 -12 3 1765 201 44 0 100 chr1 154695139 154695189 -42500243 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 3 1765 617 192 24 24 chr1 154695216 154695365 -42500067 - B1_Mur1 SINE Alu -2 147 2 3 1765 189 300 0 0 chr1 154696594 154696644 -42498788 - MIRb SINE MIR -192 76 27 3 1765 258 165 23 34 chr1 154697464 154697552 -42497880 + (TTAA)n Simple_repeat Simple_repeat 2 88 0 3 1765 724 194 7 15 chr1 154697574 154697710 -42497722 + B1_Mur4 SINE Alu 14 148 -2 3 1765 805 238 69 5 chr1 154697749 154697952 -42497480 - B3 SINE B2 0 216 1 3 1765 251 276 0 0 chr1 154698090 154698148 -42497284 + ID_B1 SINE B4 80 137 -87 3 1765 235 130 36 18 chr1 154699077 154699132 -42496300 + A-rich Low_complexity Low_complexity 3 58 0 3 1765 209 22 64 43 chr1 154699180 154699227 -42496205 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 3 1765 257 133 0 22 chr1 154699508 154699554 -42495878 - B4A SINE B4 -55 237 193 3 1765 204 40 0 0 chr1 154699599 154699624 -42495808 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 1765 720 195 31 0 chr1 154700029 154700157 -42495275 + B1_Mus2 SINE Alu 1 132 -15 3 1765 650 259 107 23 chr1 154700436 154700697 -42494735 - B4 SINE B4 -9 283 1 3 1765 433 274 207 0 chr1 154700994 154701158 -42494274 + B3 SINE B2 11 208 -8 3 1765 25 0 0 0 chr1 154701513 154701538 -42493894 + AT_rich Low_complexity Low_complexity 1 25 0 3 1765 1043 61 45 0 chr1 154702570 154702702 -42492730 - B1_Mus2 SINE Alu -9 138 1 3 1765 381 226 102 19 chr1 154703268 154703376 -42492056 + PB1D10 SINE Alu 1 117 0 3 1765 810 232 89 20 chr1 154704013 154704215 -42491217 - B3 SINE B2 0 216 1 4 1765 1128 68 0 39 chr1 154705496 154705649 -42489783 - B1_Mus1 SINE Alu 0 148 2 4 1765 317 183 69 14 chr1 154705860 154705932 -42489500 + ID4_ SINE ID 5 80 -3 4 1765 210 338 0 27 chr1 154706807 154706880 -42488552 + B4 SINE B4 70 140 -152 4 1765 395 230 60 0 chr1 154706834 154706934 -42488498 + PB1D10 SINE Alu 10 115 -2 4 1765 29 0 0 0 chr1 154708480 154708509 -42486923 + AT_rich Low_complexity Low_complexity 1 29 0 4 1765 975 202 219 6 chr1 154710202 154710548 -42484884 + MTD LTR MaLR 1 419 0 4 1765 401 213 90 45 chr1 154710915 154711048 -42484384 - B1_Mur4 SINE Alu 0 150 12 4 1765 440 219 21 0 chr1 154711158 154711254 -42484178 + B1_Mus1 SINE Alu 2 99 -49 4 1765 1454 45 5 20 chr1 154711248 154711451 -42483981 - MTA_Mm LTR MaLR -196 200 1 4 1765 598 192 41 16 chr1 154711836 154711958 -42483474 - B3 SINE B2 -91 125 1 4 1765 345 303 49 8 chr1 154712268 154712391 -42483041 - B1_Mur1 SINE Alu -12 137 10 4 1765 497 300 50 0 chr1 154712564 154712704 -42482728 + RSINE1 SINE B4 3 149 -16 4 1765 815 62 0 0 chr1 154712735 154712848 -42482584 - B1_Mm SINE Alu -1 146 34 4 1765 231 36 0 0 chr1 154712921 154712949 -42482483 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1765 331 255 293 8 chr1 154712953 154713079 -42482353 - B3 SINE B2 -52 164 3 4 1765 23 0 0 0 chr1 154713195 154713218 -42482214 + AT_rich Low_complexity Low_complexity 1 23 0 4 1765 317 268 40 74 chr1 154715753 154715902 -42479530 - B4A SINE B4 0 292 149 4 1765 1018 92 39 7 chr1 154719067 154719221 -42476211 + L1_Mus2 LINE L1 6408 6566 0 4 1765 588 225 75 40 chr1 154719453 154719680 -42475752 + L1MA6 LINE L1 6065 6299 -1 4 1765 308 219 24 24 chr1 154719805 154719834 -42475598 - B3 SINE B2 -7 209 183 4 1765 1357 173 209 11 chr1 154719834 154720184 -42475248 + MTD LTR MaLR 1 419 0 4 1765 308 219 24 24 chr1 154720184 154720238 -42475194 - B3 SINE B2 -34 182 127 4 1765 330 256 43 32 chr1 154721071 154721164 -42474268 - PB1D10 SINE Alu -21 96 3 4 1765 443 280 151 0 chr1 154721383 154721569 -42473863 - MIR SINE MIR -34 228 15 4 1765 1234 68 0 0 chr1 154722206 154722352 -42473080 + B1_Mus1 SINE Alu 3 148 0 4 1765 1233 143 10 29 chr1 154722393 154722602 -42472830 + URR1A DNA MER1_type 6 210 -16 4 1765 180 0 0 0 chr1 154723456 154723476 -42471956 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1765 922 73 136 8 chr1 154723499 154723624 -42471808 + B1_Mus2 SINE Alu 1 141 -6 4 1765 205 27 53 26 chr1 154723626 154723664 -42471768 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1765 340 273 20 73 chr1 154723869 154724019 -42471413 + ID_B1 SINE B4 83 224 0 4 1765 22 35 0 0 chr1 154724437 154724466 -42470966 + AT_rich Low_complexity Low_complexity 1 29 0 4 1765 1006 234 5 28 chr1 154724627 154724842 -42470590 + B3 SINE B2 1 210 -6 4 1765 1435 93 5 5 chr1 154725664 154725858 -42469574 - B2_Mm2 SINE B2 -1 194 1 4 1765 357 261 102 22 chr1 154726396 154726533 -42468899 + MIR SINE MIR 40 187 -75 4 1765 741 102 0 0 chr1 154727168 154727276 -42468156 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 4 1765 1062 246 143 40 chr1 154727964 154727987 -42467445 + L1MC1 LINE L1 5418 5440 -893 4 1765 1264 78 64 43 chr1 154727987 154728175 -42467257 + B2_Mm1a SINE B2 2 193 0 4 1765 1062 246 143 40 chr1 154728175 154728655 -42466777 + L1MC1 LINE L1 5441 5973 -360 4 1765 360 221 30 50 chr1 154729969 154730069 -42465363 + MT2B LTR ERVL 167 264 -337 4 1765 908 60 0 0 chr1 154729987 154730104 -42465328 + B1_Mus2 SINE Alu 31 147 0 4 1765 358 269 27 27 chr1 154730141 154730252 -42465180 - L2 LINE L2 -1344 2075 1965 4 1765 421 143 16 0 chr1 154730297 154730360 -42465072 - PB1D7 SINE Alu -13 107 44 4 1765 217 307 94 47 chr1 154730532 154730638 -42464794 + B1F SINE Alu 32 142 -7 4 1765 1100 45 75 0 chr1 154730647 154730781 -42464651 + B1_Mus2 SINE Alu 1 144 -3 4 1765 314 297 41 8 chr1 154730823 154730916 -42464516 + ID4_ SINE ID 12 104 -48 4 1765 255 125 0 0 chr1 154731465 154731505 -42463927 + (CATA)n Simple_repeat Simple_repeat 4 43 0 4 1765 490 253 87 52 chr1 154731856 154732245 -42463187 + L1MEc LINE L1 1542 1917 -4483 4 1765 894 117 155 7 chr1 154732245 154732400 -42463032 + B2_Mm1a SINE B2 2 179 -14 4 1765 334 156 10 35 chr1 154732427 154732538 -42462894 + B2_Mm2 SINE B2 46 188 -7 4 1765 206 220 0 0 chr1 154732570 154732629 -42462803 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 4 1765 213 291 233 0 chr1 154732734 154732820 -42462612 + PB1D7 SINE Alu 2 107 -13 4 1765 488 265 136 15 chr1 154732898 154733170 -42462262 + L1MEc LINE L1 2651 2955 -3364 4 1765 287 332 62 29 chr1 154733222 154733430 -42462002 + L1MEc LINE L1 4737 4951 -1368 4 1765 1923 147 42 100 chr1 154733470 154733871 -42461561 + ORR1C1 LTR MaLR 1 378 0 4 1765 301 340 113 20 chr1 154733901 154734096 -42461336 + L1MD LINE L1 4843 5055 -1091 4 1765 532 322 17 6 chr1 154734117 154734289 -42461143 + MLT1A1 LTR MaLR 2 175 -233 4 1765 354 293 103 116 chr1 154734358 154734520 -42460912 - MER2 DNA MER2_type -116 229 72 4 1765 1128 51 0 0 chr1 154734520 154734657 -42460775 + B1_Mus2 SINE Alu 2 138 -9 4 1765 354 293 103 116 chr1 154734657 154734718 -42460714 - MER2 DNA MER2_type -274 71 9 4 1765 1769 31 0 0 chr1 154735171 154735363 -42460069 - B2_Mm1t SINE B2 0 193 2 4 1765 346 309 127 9 chr1 154735890 154736102 -42459330 + MIR SINE MIR 9 245 -17 4 1765 611 139 39 102 chr1 154736313 154736441 -42458991 + PB1D9 SINE Alu 1 120 0 4 1765 705 144 83 8 chr1 154736895 154737028 -42458404 - B1_Mur3 SINE Alu -6 143 1 4 1765 222 302 38 0 chr1 154737325 154737378 -42458054 + B4A SINE B4 90 144 -148 4 1765 257 256 135 71 chr1 154737333 154737459 -42457973 + B1F SINE Alu 10 143 -6 4 1765 231 333 111 63 chr1 154737971 154738160 -42457272 - MLT1D LTR MaLR -292 213 16 4 1765 22 56 0 0 chr1 154738264 154738300 -42457132 + AT_rich Low_complexity Low_complexity 1 36 0 4 1765 1196 88 0 0 chr1 154738790 154738938 -42456494 + B1_Mus1 SINE Alu 1 148 0 4 1765 310 221 43 29 chr1 154739458 154739528 -42455904 + ID4 SINE ID 2 72 -11 4 1765 369 302 31 10 chr1 154739848 154739945 -42455487 + PB1 SINE Alu 1 99 -28 4 1765 1285 165 30 5 chr1 154739955 154740156 -42455276 + B3 SINE B2 1 206 -10 4 1765 198 0 0 0 chr1 154740211 154740233 -42455199 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1765 217 137 0 56 chr1 154741132 154741186 -42454246 + G-rich Low_complexity Low_complexity 1 51 0 4 1765 661 173 27 1 chr1 154741365 154741499 -42453933 + B1_Mur4 SINE Alu 3 140 -10 4 1765 291 28 0 0 chr1 154741503 154741539 -42453893 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 4 1765 884 70 0 0 chr1 154741871 154741986 -42453446 + B1_Mm SINE Alu 12 126 -21 4 1765 306 0 0 0 chr1 154742941 154742975 -42452457 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1765 226 211 0 19 chr1 154743194 154743247 -42452185 + MER20B DNA MER1_type 81 132 -651 4 1765 468 0 0 0 chr1 154745000 154745052 -42450380 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1765 904 232 288 0 chr1 154745062 154745381 -42450051 + MTD LTR MaLR 1 411 -8 4 1765 21 0 0 0 chr1 154745418 154745439 -42449993 + AT_rich Low_complexity Low_complexity 1 21 0 4 1765 887 172 128 5 chr1 154746091 154746278 -42449154 + B3 SINE B2 1 210 -6 4 1765 1220 70 0 0 chr1 154746839 154746982 -42448450 - B1_Mus1 SINE Alu -5 143 1 4 1765 738 269 127 0 chr1 154747013 154747210 -42448222 - ID_B1 SINE B4 -1 223 2 4 1765 405 86 0 0 chr1 154748795 154748853 -42446579 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1765 207 69 0 0 chr1 154749339 154749368 -42446064 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1765 21 0 0 0 chr1 154749722 154749743 -42445689 + GC_rich Low_complexity Low_complexity 1 21 0 4 1765 217 268 0 0 chr1 154749795 154749851 -42445581 + G-rich Low_complexity Low_complexity 1 56 0 4 1765 279 266 16 0 chr1 154749904 154749968 -42445464 + G-rich Low_complexity Low_complexity 5 69 0 4 1765 25 0 0 0 chr1 154750135 154750160 -42445272 + GC_rich Low_complexity Low_complexity 1 25 0 4 1765 1064 295 81 39 chr1 154752194 154752753 -42442679 - L1MA4 LINE L1 -293 6010 5424 4 1765 532 223 49 28 chr1 154752753 154752896 -42442536 - B1_Mur4 SINE Alu -1 149 4 4 1765 1064 318 117 82 chr1 154752896 154752941 -42442491 - L1MA4 LINE L1 -457 5423 5409 4 1765 810 125 18 0 chr1 154752941 154753053 -42442379 - PB1D9 SINE Alu -6 114 1 4 1765 1329 314 119 73 chr1 154753053 154753235 -42442197 - L1MA4 LINE L1 -472 5408 5226 4 1765 1067 87 287 6 chr1 154753235 154753409 -42442023 + URR1A DNA MER1_type 4 226 0 4 1765 1329 300 125 44 chr1 154753409 154754469 -42440963 - L1MA4 LINE L1 -887 5256 4106 4 1765 218 329 13 0 chr1 154754694 154754770 -42440662 - L2b LINE L2 -8 3367 3291 4 1765 252 286 19 48 chr1 154755012 154755048 -42440384 + B1F1 SINE Alu 50 85 -64 4 1765 1942 149 152 37 chr1 154755048 154755424 -42440008 - MTC LTR MaLR 0 421 3 4 1765 252 286 19 48 chr1 154755424 154755490 -42439942 + B1F1 SINE Alu 86 149 0 4 1765 246 62 0 0 chr1 154756024 154756056 -42439376 + (GAA)n Simple_repeat Simple_repeat 2 33 0 4 1765 823 181 7 21 chr1 154756314 154756455 -42438977 - B1_Mur3 SINE Alu -6 143 5 4 1765 1164 149 0 106 chr1 154756472 154756727 -42438705 - RMER1C Other Other -1 1341 1114 4 1765 933 177 7 0 chr1 154756738 154756885 -42438547 - B1_Mur3 SINE Alu -1 148 1 4 1765 295 209 104 0 chr1 154757407 154757474 -42437958 + B4A SINE B4 1 74 -218 4 1765 372 152 0 0 chr1 154757479 154757545 -42437887 + (ATG)n Simple_repeat Simple_repeat 2 67 0 4 1765 221 239 0 0 chr1 154757599 154757645 -42437787 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1765 2314 132 294 9 chr1 154757699 154758151 -42437281 - RMER4B LTR ERVK -4 581 1 4 1765 907 180 0 14 chr1 154758228 154758369 -42437063 + B1_Mur3 SINE Alu 1 139 -10 5 1765 234 0 0 0 chr1 154758531 154758557 -42436875 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1765 1250 61 0 26 chr1 154758560 154758712 -42436720 + B1_Mus1 SINE Alu 1 148 0 5 1765 180 0 0 0 chr1 154759642 154759662 -42435770 + (CTCTG)n Simple_repeat Simple_repeat 3 22 0 5 1765 182 278 74 0 chr1 154760160 154760214 -42435218 - L2 LINE L2 -1892 1527 1470 5 1765 289 237 61 50 chr1 154760250 154760363 -42435069 + PB1D7 SINE Alu 3 119 -1 5 1765 352 284 83 57 chr1 154760380 154760537 -42434895 + RSINE1 SINE B4 3 163 -2 5 1765 287 201 76 152 chr1 154762192 154762350 -42433082 - RMER10A LTR ERVL -175 267 122 5 1765 1187 41 0 51 chr1 154762523 154762679 -42432753 - B1_Mus1 SINE Alu 0 148 1 5 1765 631 164 119 17 chr1 154763209 154763327 -42432105 - B1_Mus2 SINE Alu -17 130 1 5 1765 1237 81 0 0 chr1 154763358 154763506 -42431926 + B1_Mus1 SINE Alu 1 148 0 5 1765 227 197 208 14 chr1 154763901 154763973 -42431459 + BLACKJACK DNA AcHobo 2360 2445 -499 5 1765 234 154 0 0 chr1 154764007 154764046 -42431386 - ID_B1 SINE B4 0 224 186 5 1765 726 34 0 0 chr1 154764048 154764137 -42431295 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1765 476 309 21 28 chr1 154764142 154764285 -42431147 - RSINE1 SINE B4 -12 153 12 5 1765 470 210 0 0 chr1 154764289 154764370 -42431062 - ID_B1 SINE B4 -74 150 70 5 1765 263 257 43 0 chr1 154764974 154765044 -42430388 - B1F1 SINE Alu -59 90 18 5 1765 3271 111 90 94 chr1 154765156 154765204 -42430228 + RMER4B LTR ERVK 1 48 -537 5 1765 907 124 78 28 chr1 154765204 154765345 -42430087 + B1_Mus1 SINE Alu 1 148 0 5 1765 3271 111 90 94 chr1 154765345 154765883 -42429549 + RMER4B LTR ERVK 49 585 0 5 1765 377 271 173 11 chr1 154765937 154766116 -42429316 - MER57C2 LTR ERV1 -226 208 1 5 1765 291 28 0 0 chr1 154766329 154766365 -42429067 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1765 505 229 16 33 chr1 154766377 154766499 -42428933 - RSINE1 SINE B4 -34 131 12 5 1765 388 268 93 0 chr1 154767110 154767207 -42428225 - PB1D7 SINE Alu -14 106 1 5 1765 800 149 56 7 chr1 154767240 154767382 -42428050 + B1_Mur4 SINE Alu 2 150 0 5 1765 478 252 56 35 chr1 154767484 154767501 -42427931 + B1F SINE Alu 2 148 -1 5 1765 619 238 8 8 chr1 154767501 154767628 -42427804 + ID_B1 SINE B4 96 222 -2 5 1765 647 231 94 25 chr1 154767846 154768006 -42427426 + B4A SINE B4 122 292 0 5 1765 1232 61 0 0 chr1 154768286 154768433 -42426999 + B1_Mus1 SINE Alu 2 148 0 5 1765 986 161 145 0 chr1 154768482 154768675 -42426757 - URR1A DNA MER1_type -4 222 2 5 1765 1919 204 148 30 chr1 154768685 154769180 -42426252 + RMER15 LTR ERVL 22 574 -1 5 1765 572 304 0 0 chr1 154769286 154769424 -42426008 + RSINE1 SINE B4 28 165 0 5 1765 1445 169 81 128 chr1 154769549 154769894 -42425538 + ORR1A4 LTR MaLR 1 329 0 5 1765 1259 123 27 0 chr1 154769956 154770143 -42425289 - B2_Mm1t SINE B2 0 193 2 5 1765 322 347 74 7 chr1 154770448 154770596 -42424836 - RLTR18B LTR ERVK -244 268 111 5 1765 751 236 23 11 chr1 154770730 154770906 -42424526 - RLTR18 LTR ERVK -424 192 15 5 1765 210 71 0 0 chr1 154771221 154771249 -42424183 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1765 666 214 0 125 chr1 154771250 154771292 -42424140 - B1_Mur1 SINE Alu -9 140 99 5 1765 1435 65 22 0 chr1 154771292 154771476 -42423956 - B2_Mm1t SINE B2 -4 189 2 5 1765 666 214 0 125 chr1 154771476 154771593 -42423839 - B1_Mur1 SINE Alu -51 98 1 5 1765 498 235 75 8 chr1 154771730 154771850 -42423582 - RSINE1 SINE B4 -37 128 1 5 1765 331 197 14 43 chr1 154772198 154772267 -42423165 + B3 SINE B2 5 71 -145 5 1765 232 281 60 12 chr1 154772294 154772377 -42423055 - L1MEd LINE L1 -4916 1203 1117 5 1765 304 384 54 14 chr1 154772399 154772547 -42422885 - MLT1G LTR MaLR -18 573 420 5 1765 312 340 29 0 chr1 154772577 154772680 -42422752 - MLT1G LTR MaLR -260 331 226 5 1765 387 0 0 0 chr1 154772680 154772723 -42422709 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1765 1315 20 0 13 chr1 154772723 154772872 -42422560 - B1_Mus2 SINE Alu 0 147 1 5 1765 350 224 118 27 chr1 154772872 154772982 -42422450 - MLT1G LTR MaLR -351 240 121 5 1765 1151 87 0 0 chr1 154773138 154773276 -42422156 - B1_Mus2 SINE Alu -8 139 2 5 1765 879 218 7 0 chr1 154773281 154773428 -42422004 - B1_Mur1 SINE Alu -1 148 1 5 1765 662 262 14 0 chr1 154773468 154773609 -42421823 - B1F SINE Alu 0 149 7 5 1765 868 107 45 15 chr1 154773734 154773867 -42421565 + B1_Mus2 SINE Alu 1 137 -10 5 1765 618 14 0 0 chr1 154773867 154773938 -42421494 + (GAAAA)n Simple_repeat Simple_repeat 2 72 0 5 1765 1146 102 0 0 chr1 154773938 154774104 -42421328 + (GGGAA)n Simple_repeat Simple_repeat 5 171 0 5 1765 267 263 0 0 chr1 154774107 154774164 -42421268 + RSINE1 SINE B4 88 144 -21 5 1765 309 82 0 0 chr1 154774167 154774216 -42421216 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1765 565 266 28 21 chr1 154774264 154774406 -42421026 - ID_B1 SINE B4 -48 176 34 5 1765 240 35 0 0 chr1 154774452 154774481 -42420951 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1765 1220 75 0 0 chr1 154774659 154774806 -42420626 - B1_Mus1 SINE Alu 0 148 2 5 1765 586 281 7 0 chr1 154774913 154775048 -42420384 + RSINE1 SINE B4 11 146 -19 5 1765 1192 65 0 0 chr1 154775650 154775789 -42419643 + B1_Mus1 SINE Alu 2 140 -8 5 1765 302 42 0 41 chr1 154775789 154775838 -42419594 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1765 1604 113 23 114 chr1 154775970 154776278 -42419154 + ORR1B1 LTR MaLR 115 394 0 5 1765 641 206 23 8 chr1 154776280 154776412 -42419020 - ORR1E LTR MaLR -193 166 33 5 1765 773 187 62 8 chr1 154776398 154776577 -42418855 - ORR1E-int LTR MaLR -26 1554 1204 5 1765 227 207 28 0 chr1 154776687 154776754 -42418678 + L1M3 LINE L1 5362 5433 -761 5 1765 691 253 98 91 chr1 154777222 154777509 -42417923 + B4 SINE B4 3 291 -1 5 1765 237 341 86 38 chr1 154778217 154778403 -42417029 - ORR1C2 LTR MaLR -189 195 1 5 1765 339 236 99 45 chr1 154779209 154779320 -42416112 + PB1D10 SINE Alu 1 117 0 5 1765 538 120 0 20 chr1 154779447 154779549 -42415883 - L1_Mus3 LINE L1 0 6638 6539 5 1765 531 0 0 0 chr1 154779558 154779617 -42415815 + (TTTTA)n Simple_repeat Simple_repeat 4 62 0 5 1765 183 42 0 0 chr1 154780558 154780582 -42414850 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1765 1545 226 37 62 chr1 154781057 154781459 -42413973 - MTD LTR MaLR -14 405 25 5 1765 401 19 38 0 chr1 154781523 154781576 -42413856 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1765 774 105 0 0 chr1 154781708 154781822 -42413610 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 5 1765 264 250 0 0 chr1 154782142 154782194 -42413238 + polypyrimidine Low_complexity Low_complexity 3 54 0 5 1765 476 229 37 0 chr1 154783120 154783229 -42412203 + PB1D10 SINE Alu 5 117 0 5 1765 671 275 92 75 chr1 154783284 154783630 -42411802 + ORR1E LTR MaLR 4 355 -4 5 1765 822 244 56 0 chr1 154784216 154784413 -42411019 - B3 SINE B2 -6 210 3 5 1765 185 159 23 0 chr1 154784450 154784494 -42410938 + CT-rich Low_complexity Low_complexity 1 45 0 5 1765 387 0 0 0 chr1 154784619 154784662 -42410770 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1765 237 64 191 0 chr1 154786579 154786626 -42408806 - ORR1B2 LTR MaLR 0 367 312 5 1765 258 234 48 87 chr1 154786668 154786771 -42408661 - RMER15 LTR ERVL -413 162 64 5 1765 503 248 27 9 chr1 154787415 154787525 -42407907 - PB1D10 SINE Alu -1 116 5 5 1765 183 246 31 62 chr1 154787672 154787737 -42407695 + MIRc SINE MIR 173 235 -33 5 1765 287 289 0 117 chr1 154787783 154787920 -42407512 - RSINE1 SINE B4 0 165 45 5 1765 6839 44 0 2 chr1 154788217 154789035 -42406397 - L1Md_F2 LINE L1 0 6582 5767 5 1765 297 167 0 0 chr1 154789769 154789823 -42405609 + (ATG)n Simple_repeat Simple_repeat 2 55 0 5 1765 252 315 22 0 chr1 154789826 154789915 -42405517 - L2a LINE L2 -3 3423 3333 5 1765 253 323 50 89 chr1 154790074 154790206 -42405226 - L2a LINE L2 -427 2992 2866 5 1765 452 241 203 94 chr1 154790206 154790409 -42405023 + RLTR9A LTR ERVK 1 249 -119 5 1765 831 106 0 83 chr1 154790409 154790438 -42404994 + B1_Mus1 SINE Alu 4 31 -117 5 1765 194 0 0 37 chr1 154790438 154790465 -42404967 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 5 1765 831 106 0 83 chr1 154790465 154790579 -42404853 + B1_Mus1 SINE Alu 32 135 -13 5 1765 238 50 50 0 chr1 154790582 154790622 -42404810 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1765 452 241 203 94 chr1 154790622 154790744 -42404688 + RLTR9A LTR ERVK 250 366 -2 5 1765 253 323 50 89 chr1 154790744 154790869 -42404563 - L2a LINE L2 -554 2865 2746 5 1765 24 0 0 0 chr1 154791125 154791149 -42404283 + AT_rich Low_complexity Low_complexity 1 24 0 5 1765 607 293 12 18 chr1 154791353 154791520 -42403912 + B3A SINE B2 17 182 -16 5 1765 191 156 0 43 chr1 154791521 154791568 -42403864 + (CATA)n Simple_repeat Simple_repeat 4 48 0 5 1765 189 94 0 0 chr1 154791829 154791861 -42403571 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1765 2054 98 3 59 chr1 154791929 154792266 -42403166 - ORR1A3 LTR MaLR -8 318 1 5 1765 1171 188 9 27 chr1 154792495 154792714 -42402718 + B3 SINE B2 1 215 -1 5 1765 192 40 0 0 chr1 154792770 154792795 -42402637 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1765 219 36 0 0 chr1 154792812 154792840 -42402592 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1765 439 369 107 0 chr1 154792853 154793002 -42402430 - B3A SINE B2 -30 168 4 5 1765 1128 78 0 0 chr1 154793089 154793230 -42402202 - B1_Mus2 SINE Alu -5 142 2 5 1765 942 209 5 53 chr1 154793451 154793658 -42401774 - B3A SINE B2 -1 197 1 5 1765 271 287 22 101 chr1 154793837 154793952 -42401480 + PB1D7 SINE Alu 1 115 -5 5 1765 1275 85 0 0 chr1 154793954 154794226 -42401206 + (CA)n Simple_repeat Simple_repeat 1 272 0 5 1765 304 309 94 8 chr1 154794235 154794362 -42401070 + MLT1K LTR MaLR 458 595 0 6 1765 255 28 0 53 chr1 154794383 154794421 -42401011 + U6 snRNA snRNA 1 36 -71 6 1765 409 233 142 74 chr1 154795552 154795728 -42399704 + B3A SINE B2 5 192 -6 6 1766 275 280 149 0 chr1 154797428 154797535 -42397897 - MIRb SINE MIR -78 190 68 6 1766 231 326 50 20 chr1 154797628 154797728 -42397704 - ID_B1 SINE B4 -121 103 1 6 1766 509 269 76 8 chr1 154797816 154797947 -42397485 + RSINE1 SINE B4 1 140 -25 6 1766 872 222 0 21 chr1 154798118 154798311 -42397121 + B3 SINE B2 1 189 -27 6 1766 642 149 0 9 chr1 154798303 154798411 -42397021 + B1_Mur4 SINE Alu 44 150 0 6 1766 1382 105 5 0 chr1 154798415 154798606 -42396826 + B2_Mm1a SINE B2 2 193 0 6 1766 295 236 14 14 chr1 154798755 154798828 -42396604 + B4 SINE B4 11 83 -209 6 1766 251 333 0 0 chr1 154798858 154798924 -42396508 + (CACCAT)n Simple_repeat Simple_repeat 1 66 0 6 1766 432 258 23 31 chr1 154798952 154799080 -42396352 + ID_B1 SINE B4 86 212 -12 6 1766 203 265 0 0 chr1 154799097 154799146 -42396286 + A-rich Low_complexity Low_complexity 2 50 0 6 1766 249 275 56 35 chr1 154799200 154799343 -42396089 + MIRc SINE MIR 3 148 -120 6 1766 294 277 77 0 chr1 154799424 154799554 -42395878 + L2a LINE L2 2215 2354 -1065 6 1766 348 328 131 25 chr1 154799555 154800115 -42395317 + L2a LINE L2 2790 3415 -11 6 1766 482 325 6 18 chr1 154800261 154800404 -42395028 + RSINE1 SINE B4 2 143 -22 6 1766 270 0 0 0 chr1 154800404 154800434 -42394998 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1766 482 325 6 18 chr1 154800434 154800453 -42394979 + RSINE1 SINE B4 144 162 -3 6 1766 381 336 0 0 chr1 154800596 154800706 -42394726 + RSINE1 SINE B4 1 110 -55 6 1766 542 230 0 7 chr1 154804706 154804855 -42390577 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 1766 552 321 19 0 chr1 154804860 154805019 -42390413 - RSINE1 SINE B4 -1 164 3 6 1766 415 278 0 9 chr1 154805051 154805160 -42390272 - B1_Mur1 SINE Alu -6 143 36 6 1766 473 218 39 19 chr1 154805168 154805291 -42390141 - B1F SINE Alu 0 120 1 6 1766 423 259 19 0 chr1 154805424 154805532 -42389900 - ID_B1 SINE B4 -10 214 105 6 1766 679 120 0 17 chr1 154805743 154805862 -42389570 + (GAAAA)n Simple_repeat Simple_repeat 3 119 0 6 1766 230 0 33 0 chr1 154805954 154805984 -42389448 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 1766 1107 45 8 0 chr1 154805984 154806118 -42389314 - B1_Mus1 SINE Alu -13 135 1 6 1766 231 198 247 0 chr1 154806173 154806254 -42389178 + ID_B1 SINE B4 105 205 -19 6 1766 195 42 0 0 chr1 154806316 154806340 -42389092 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1766 287 25 25 0 chr1 154806361 154806401 -42389031 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 6 1766 430 275 76 14 chr1 154806670 154806814 -42388618 - B4 SINE B4 -139 153 1 6 1766 218 220 0 0 chr1 154807532 154807582 -42387850 + B1_Mur3 SINE Alu 73 122 -27 6 1766 534 263 22 7 chr1 154807745 154807883 -42387549 - B1F SINE Alu -9 140 1 6 1766 247 103 0 0 chr1 154807919 154807958 -42387474 + U3 snRNA snRNA 1 39 -178 6 1766 208 365 64 39 chr1 154808307 154808589 -42386843 + L2b LINE L2 3068 3356 -19 6 1766 1052 82 7 33 chr1 154808911 154809063 -42386369 - B1_Mus1 SINE Alu 0 148 1 6 1766 389 20 20 0 chr1 154809096 154809146 -42386286 + (TATG)n Simple_repeat Simple_repeat 4 54 0 6 1766 545 256 60 0 chr1 154809150 154809283 -42386149 - B3A SINE B2 -54 144 4 6 1766 237 259 11 11 chr1 154810255 154810345 -42385087 + (TA)n Simple_repeat Simple_repeat 1 90 0 6 1766 313 215 34 27 chr1 154810345 154810493 -42384939 - RCHARR1 DNA MER1_type -66 908 760 6 1766 35 54 0 0 chr1 154810493 154810549 -42384883 + AT_rich Low_complexity Low_complexity 1 56 0 6 1766 590 263 131 0 chr1 154810611 154810809 -42384623 + ID_B1 SINE B4 1 224 0 6 1766 1800 268 108 17 chr1 154810864 154811046 -42384386 - RCHARR1 DNA MER1_type -231 743 551 6 1766 816 260 224 6 chr1 154811046 154811390 -42384042 + MTD LTR MaLR 1 419 0 6 1766 1800 268 108 17 chr1 154811390 154811864 -42383568 - RCHARR1 DNA MER1_type -424 550 27 6 1766 277 330 11 0 chr1 154812031 154812125 -42383307 + B4A SINE B4 122 216 -76 6 1766 271 253 47 24 chr1 154812249 154812334 -42383098 + B1F2 SINE Alu 13 99 -50 6 1766 393 102 0 0 chr1 154812610 154812669 -42382763 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1766 1247 87 25 75 chr1 154812710 154812910 -42382522 - B2_Mm2 SINE B2 -5 190 1 6 1766 281 183 33 0 chr1 154812999 154813059 -42382373 + L2b LINE L2 3314 3375 0 6 1766 665 263 95 0 chr1 154813085 154813264 -42382168 - B3 SINE B2 -20 196 1 6 1766 193 322 0 0 chr1 154813343 154813402 -42382030 - L2a LINE L2 -18 3408 3350 6 1766 261 0 0 0 chr1 154813881 154813910 -42381522 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1766 459 278 8 50 chr1 154813916 154814037 -42381395 - RSINE1 SINE B4 -15 150 35 6 1766 189 100 60 0 chr1 154815179 154815229 -42380203 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 6 1766 235 299 107 83 chr1 154815247 154815415 -42380017 - B4 SINE B4 0 292 121 6 1766 629 314 55 52 chr1 154815603 154815929 -42379503 + MER58B DNA MER1_type 1 327 -14 6 1766 240 293 73 83 chr1 154816378 154816583 -42378849 + L2c LINE L2 3182 3384 -3 6 1766 612 217 14 14 chr1 154816780 154816920 -42378512 + B1F SINE Alu 10 149 0 6 1766 307 274 24 0 chr1 154816927 154817011 -42378421 + RSINE1 SINE B4 6 91 -74 6 1766 305 355 60 40 chr1 154817455 154817613 -42377819 - L3 LINE CR1 0 4489 4323 6 1766 3258 146 44 35 chr1 154817613 154818183 -42377249 - RMER15 LTR ERVL 0 575 1 6 1766 305 355 60 40 chr1 154818183 154818376 -42377056 - L3 LINE CR1 -167 4322 4132 6 1766 22 35 0 0 chr1 154819058 154819087 -42376345 + AT_rich Low_complexity Low_complexity 1 29 0 6 1766 404 252 92 34 chr1 154819182 154819301 -42376131 - RSINE1 SINE B4 -38 127 2 6 1766 445 252 17 17 chr1 154819405 154819522 -42375910 - PB1D10 SINE Alu 0 117 1 6 1766 558 200 19 0 chr1 154819835 154819940 -42375492 + B1_Mur1 SINE Alu 31 137 -12 6 1766 297 336 43 28 chr1 154820593 154820734 -42374698 - B1F2 SINE Alu 0 149 7 6 1766 808 253 22 6 chr1 154820627 154820810 -42374622 - ID_B1 SINE B4 -31 193 8 6 1766 186 103 0 0 chr1 154821261 154821290 -42374142 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 6 1766 708 197 7 27 chr1 154823120 154823266 -42372166 + B1_Mur1 SINE Alu 1 143 -6 6 1766 3883 107 9 38 chr1 154823296 154823877 -42371555 + LTRIS2 LTR ERV1 1 564 0 6 1766 276 149 0 0 chr1 154824154 154824201 -42371231 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1766 680 250 0 36 chr1 154824206 154824372 -42371060 - RSINE1 SINE B4 -5 160 1 6 1766 2147 148 44 64 chr1 154824653 154825043 -42370389 + ORR1C2 LTR MaLR 3 384 0 6 1766 213 244 0 0 chr1 154825131 154825190 -42370242 + T-rich Low_complexity Low_complexity 1 59 0 6 1766 253 388 0 25 chr1 154825190 154825309 -42370123 - ID_B1 SINE B4 -21 203 88 6 1766 201 309 50 40 chr1 154825670 154825771 -42369661 - MIRm SINE MIR -126 150 49 6 1766 1566 196 47 63 chr1 154826116 154826562 -42368870 + RMER10A LTR ERVL 2 440 -2 6 1766 260 316 40 61 chr1 154826766 154826914 -42368518 - L2a LINE L2 -4 3422 3278 6 1766 269 325 96 0 chr1 154827447 154827604 -42367828 + MIR SINE MIR 59 230 -32 6 1766 215 303 13 13 chr1 154828540 154828617 -42366815 - ID4_ SINE ID -4 79 3 6 1766 403 264 0 0 chr1 154828814 154828905 -42366527 + PB1D7 SINE Alu 5 95 -25 6 1766 504 216 143 43 chr1 154829517 154829657 -42365775 - RSINE1 SINE B4 -9 156 3 6 1766 254 232 0 0 chr1 154829838 154829907 -42365525 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1766 302 268 14 0 chr1 154829909 154829980 -42365452 - ID4 SINE ID -10 73 2 6 1766 1507 142 4 0 chr1 154830233 154830458 -42364974 + URR1A DNA MER1_type 1 226 0 6 1766 454 97 308 34 chr1 154831545 154831662 -42363770 - B2_Mm2 SINE B2 0 195 47 6 1766 1214 97 17 17 chr1 154831729 154831908 -42363524 - B2_Mm1t SINE B2 -14 179 1 6 1766 428 254 66 33 chr1 154831940 154832062 -42363370 - B3 SINE B2 0 216 91 6 1766 537 58 0 0 chr1 154832063 154832132 -42363300 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 6 1766 1046 37 0 0 chr1 154832138 154832273 -42363159 - B1_Mm SINE Alu -1 146 12 6 1766 678 238 17 88 chr1 154832273 154832378 -42363054 - ID_B1 SINE B4 -1 223 1 6 1766 561 240 15 15 chr1 154833064 154833195 -42362237 - ID_B1 SINE B4 0 224 94 6 1766 271 309 47 23 chr1 154833118 154833204 -42362228 - PB1D10 SINE Alu -29 88 1 6 1766 231 36 0 0 chr1 154833209 154833237 -42362195 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1766 576 165 20 10 chr1 154833270 154833368 -42362064 - B1_Mur3 SINE Alu -50 99 1 6 1766 311 180 139 180 chr1 154833401 154833481 -42361951 - B1F2 SINE Alu 0 149 64 6 1766 604 156 264 7 chr1 154833481 154833636 -42361796 - B3A SINE B2 -3 195 1 6 1766 311 180 139 180 chr1 154833636 154833677 -42361755 - B1F2 SINE Alu -86 63 33 6 1766 237 246 13 40 chr1 154833844 154833920 -42361512 + L1ME2 LINE L1 6087 6160 -4 6 1766 420 353 88 10 chr1 154834250 154834442 -42360990 - L4 LINE RTE -433 1596 1390 6 1766 791 266 30 4 chr1 154834548 154834782 -42360650 - L1MEc LINE L1 -3667 2652 2413 6 1766 317 216 222 74 chr1 154834788 154834923 -42360509 + RSINE1 SINE B4 3 157 -8 6 1766 22 0 0 0 chr1 154834948 154834970 -42360462 + AT_rich Low_complexity Low_complexity 1 22 0 6 1766 414 0 0 0 chr1 154835036 154835082 -42360350 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1766 484 297 31 0 chr1 154835105 154835233 -42360199 - ID_B1 SINE B4 -12 212 81 7 1766 293 307 158 48 chr1 154835253 154835611 -42359821 - L1MEc LINE L1 -4244 2156 1740 6 1766 2063 154 50 14 chr1 154835611 154835973 -42359459 - ORR1C1 LTR MaLR 0 378 4 7 1766 293 307 158 48 chr1 154835973 154836076 -42359356 - L1MEc LINE L1 -4661 1739 1645 6 1766 690 185 6 17 chr1 154836078 154836259 -42359173 + CT-rich Low_complexity Low_complexity 2 180 0 7 1766 263 327 55 0 chr1 154836296 154836406 -42359026 + PB1 SINE Alu 5 120 -7 7 1766 275 320 13 0 chr1 154836715 154836793 -42358639 - L4 LINE RTE -784 1245 1167 6 1766 414 0 0 0 chr1 154836798 154836844 -42358588 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1766 180 77 0 0 chr1 154836844 154836869 -42358563 + (CG)n Simple_repeat Simple_repeat 2 27 0 7 1766 225 0 0 0 chr1 154836939 154836964 -42358468 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1766 433 250 153 0 chr1 154837178 154837302 -42358130 + ID_B1 SINE B4 82 224 0 7 1766 574 191 65 14 chr1 154837617 154837755 -42357677 - B1F SINE Alu 0 149 5 7 1766 287 304 0 107 chr1 154838528 154838668 -42356764 + MT2B LTR ERVL 110 234 -367 7 1766 371 267 47 16 chr1 154838603 154838709 -42356723 + B1_Mur2 SINE Alu 11 113 -7 7 1766 549 55 0 0 chr1 154838780 154838853 -42356579 + (AGGGGG)n Simple_repeat Simple_repeat 4 76 0 7 1766 250 266 16 0 chr1 154839144 154839208 -42356224 + MTEb LTR MaLR 104 168 -211 7 1766 637 63 0 21 chr1 154839208 154839305 -42356127 + (GGGGA)n Simple_repeat Simple_repeat 5 99 0 7 1766 250 306 170 7 chr1 154839331 154839466 -42355966 + MTEb LTR MaLR 219 375 -4 7 1766 1149 127 127 0 chr1 154840440 154840637 -42354795 - URR1A DNA MER1_type 0 226 5 7 1766 426 85 0 0 chr1 154840668 154840727 -42354705 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1766 619 177 297 6 chr1 154840773 154840938 -42354494 - B3 SINE B2 -3 213 1 7 1766 227 267 106 29 chr1 154841229 154841333 -42354099 - PB1D10 SINE Alu -5 112 1 7 1766 457 229 79 13 chr1 154841351 154841477 -42353955 + PB1D10 SINE Alu 2 129 -18 7 1766 2415 155 29 12 chr1 154841692 154842104 -42353328 - MTC LTR MaLR 0 421 3 7 1766 274 138 0 33 chr1 154843102 154843162 -42352270 + C-rich Low_complexity Low_complexity 4 61 0 7 1766 533 101 0 22 chr1 154843166 154843257 -42352175 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 7 1766 664 269 0 0 chr1 154843258 154843388 -42352044 - ID_B1 SINE B4 -12 212 83 7 1766 247 270 0 0 chr1 154843665 154843728 -42351704 + ID4 SINE ID 5 67 -16 7 1766 314 289 87 0 chr1 154844867 154844971 -42350461 + MIR SINE MIR 26 138 -124 7 1766 372 344 13 0 chr1 154845023 154845177 -42350255 + L1MB3 LINE L1 5996 6151 -32 7 1766 392 270 3 7 chr1 154845177 154845276 -42350156 + PB1D10 SINE Alu 1 95 -219 7 1766 1276 28 0 0 chr1 154846438 154846583 -42348849 + B1_Mm SINE Alu 1 145 -2 7 1766 351 0 0 0 chr1 154846583 154846622 -42348810 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1766 757 216 77 12 chr1 154846705 154846874 -42348558 - B3 SINE B2 -10 206 27 7 1766 381 182 0 0 chr1 154846874 154846973 -42348459 + T-rich Low_complexity Low_complexity 1 99 0 7 1766 1206 61 0 0 chr1 154846973 154847120 -42348312 - B1_Mus2 SINE Alu 0 147 1 7 1766 243 0 0 0 chr1 154847655 154847682 -42347750 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1766 351 327 18 0 chr1 154847961 154848071 -42347361 + PB1D10 SINE Alu 6 117 0 7 1766 1445 212 137 27 chr1 154848635 154849008 -42346424 - MTD LTR MaLR 0 419 6 7 1766 477 0 0 0 chr1 154849314 154849367 -42346065 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1766 183 355 74 25 chr1 154849527 154849608 -42345824 + MIRm SINE MIR 161 245 -31 7 1766 347 309 66 55 chr1 154850333 154850538 -42344894 - MIRc SINE MIR -29 233 34 7 1766 2053 272 92 30 chr1 154850585 154851365 -42344067 + L1MB7 LINE L1 5301 6129 -55 7 1766 578 250 48 0 chr1 154851507 154851631 -42343801 + B1_Mur1 SINE Alu 16 145 -4 7 1766 1020 207 50 0 chr1 154851977 154852175 -42343257 + B3 SINE B2 5 212 -4 7 1766 727 260 0 45 chr1 154852201 154852358 -42343074 + RSINE1 SINE B4 2 151 -14 7 1766 235 250 19 0 chr1 154852547 154852599 -42342833 - MIRb SINE MIR -179 89 37 7 1766 216 313 0 0 chr1 154852983 154853050 -42342382 - B4 SINE B4 -195 97 31 7 1766 266 265 0 14 chr1 154852996 154853065 -42342367 - ID4_ SINE ID 0 83 16 7 1766 182 315 13 27 chr1 154853589 154853664 -42341768 + MIRb SINE MIR 115 188 -80 7 1766 794 264 109 61 chr1 154854645 154854975 -42340457 + ORR1E LTR MaLR 14 359 0 7 1766 21 0 0 0 chr1 154855840 154855861 -42339571 + AT_rich Low_complexity Low_complexity 1 21 0 7 1766 1081 110 0 0 chr1 154855861 154856007 -42339425 - B1_Mus1 SINE Alu 0 148 3 7 1766 35 24 0 0 chr1 154856079 154856121 -42339311 + AT_rich Low_complexity Low_complexity 1 42 0 7 1766 1749 163 124 82 chr1 154856522 154856950 -42338482 + RLTR41 LTR ERV1 1 446 0 7 1766 269 250 0 32 chr1 154857198 154857260 -42338172 + ID_B1 SINE B4 119 178 -46 7 1766 310 286 87 11 chr1 154857283 154857375 -42338057 + PB1D10 SINE Alu 2 100 -17 7 1766 27 0 0 0 chr1 154857375 154857402 -42338030 + AT_rich Low_complexity Low_complexity 1 27 0 7 1766 326 326 95 7 chr1 154857525 154857673 -42337759 - MER5A DNA MER1_type -3 186 26 7 1766 186 319 183 31 chr1 154857991 154858308 -42337124 - L2 LINE L2 -569 2850 2486 7 1766 365 310 8 41 chr1 154858561 154858682 -42336750 - PB1D10 SINE Alu 0 117 1 7 1766 644 276 7 7 chr1 154858682 154858761 -42336671 - ID SINE ID -143 81 3 7 1766 291 312 37 43 chr1 154860005 154860159 -42335273 + MIRb SINE MIR 36 194 -74 7 1766 565 219 23 23 chr1 154860315 154860446 -42334986 - B1F SINE Alu -5 144 14 7 1766 227 31 0 30 chr1 154861250 154861283 -42334149 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1766 321 208 0 0 chr1 154861299 154861371 -42334061 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 1766 331 235 59 0 chr1 154863204 154863289 -42332143 + RMER30 DNA MER1_type 109 198 -4 7 1766 229 286 19 93 chr1 154863288 154863396 -42332036 - ORR1E LTR MaLR -259 100 1 7 1766 1223 106 135 5 chr1 154863555 154863755 -42331677 - URR1A DNA MER1_type 0 226 1 7 1766 556 260 45 59 chr1 154864336 154864557 -42330875 + MER20 DNA MER1_type 1 218 -1 7 1766 542 212 133 0 chr1 154864650 154864763 -42330669 - RSINE1 SINE B4 -24 141 14 7 1766 564 226 26 0 chr1 154864945 154865060 -42330372 + B1_Mur1 SINE Alu 27 144 -5 7 1766 287 311 82 37 chr1 154865066 154865288 -42330144 + MIRb SINE MIR 2 229 -33 7 1766 185 411 92 0 chr1 154865393 154865534 -42329898 - L2c LINE L2 -214 3173 3020 7 1766 326 118 39 0 chr1 154865747 154865798 -42329634 - RSINE1 SINE B4 -33 132 80 7 1766 216 0 0 0 chr1 154866019 154866043 -42329389 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1766 212 328 0 0 chr1 154867145 154867206 -42328226 + ID_B1 SINE B4 91 151 -73 7 1766 465 312 56 50 chr1 154867252 154867431 -42328001 + B4 SINE B4 107 286 -6 7 1766 929 224 0 54 chr1 154867436 154867639 -42327793 - B3A SINE B2 -6 192 1 7 1766 1526 45 0 11 chr1 154867708 154867889 -42327543 + B2_Mm1a SINE B2 1 179 -14 7 1766 1481 68 5 0 chr1 154867889 154868079 -42327353 + B2_Mm1t SINE B2 2 192 -1 7 1766 1380 62 0 0 chr1 154869172 154869351 -42326081 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 7 1766 323 239 0 43 chr1 154869351 154869535 -42325897 + CT-rich Low_complexity Low_complexity 5 180 0 7 1766 333 294 0 12 chr1 154869540 154869626 -42325806 - ID_B1 SINE B4 -36 188 104 7 1766 477 206 8 0 chr1 154869552 154869649 -42325783 - PB1D10 SINE Alu -52 98 1 7 1766 263 329 211 7 chr1 154870326 154870473 -42324959 + ID_B1 SINE B4 31 207 -17 7 1766 311 0 26 0 chr1 154871009 154871048 -42324384 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7 1766 444 37 0 0 chr1 154871159 154871213 -42324219 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1766 626 298 48 31 chr1 154871275 154871569 -42323863 - L1ME2 LINE L1 -16 6148 5850 7 1766 677 223 0 203 chr1 154871583 154871859 -42323573 - ID_B1 SINE B4 0 224 5 7 1766 576 308 85 50 chr1 154871959 154872301 -42323131 - L1ME2 LINE L1 -338 5826 5473 7 1766 423 287 10 0 chr1 154872500 154872601 -42322831 + RSINE1 SINE B4 1 102 -63 7 1766 598 229 48 48 chr1 154872687 154872834 -42322598 - B1_Mur3 SINE Alu 0 149 3 7 1766 424 286 213 18 chr1 154872863 154873027 -42322405 - L1ME2 LINE L1 -2542 5453 5258 7 1766 600 160 22 17 chr1 154873038 154873216 -42322216 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1766 687 304 32 22 chr1 154873221 154873406 -42322026 + ID_B1 SINE B4 12 198 -26 7 1766 306 307 117 19 chr1 154873426 154873682 -42321750 - L1ME2 LINE L1 -974 5172 4892 7 1766 334 126 22 22 chr1 154873742 154873831 -42321601 + (TCTG)n Simple_repeat Simple_repeat 2 90 0 7 1766 317 345 28 28 chr1 154874022 154874204 -42321228 + L2a LINE L2 3110 3291 -135 7 1766 226 295 37 49 chr1 154874316 154874398 -42321034 + L2a LINE L2 3345 3425 -1 7 1766 707 261 117 35 chr1 154874535 154874765 -42320667 - B4A SINE B4 -43 249 1 7 1766 264 346 45 0 chr1 154874777 154874933 -42320499 - HAL1 LINE L1 -1514 993 831 7 1766 314 299 68 110 chr1 154875304 154875541 -42319891 - HAL1 LINE L1 -2219 288 62 7 1766 771 207 58 0 chr1 154876192 154876366 -42319066 + RMER1C Other Other 1158 1341 -1 7 1766 546 299 65 38 chr1 154876385 154876706 -42318726 - MTEa LTR MaLR -2 377 1 7 1766 352 210 78 26 chr1 154876932 154877035 -42318397 - PB1D10 SINE Alu -2 118 10 7 1766 183 184 0 0 chr1 154877488 154877526 -42317906 + (TATG)n Simple_repeat Simple_repeat 4 41 0 7 1766 195 42 0 0 chr1 154877592 154877616 -42317816 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 7 1766 591 309 11 54 chr1 154877631 154877816 -42317616 - B4 SINE B4 -106 186 10 8 1766 1563 43 21 0 chr1 154877851 154878039 -42317393 - B2_Mm1a SINE B2 0 193 2 8 1766 1832 121 61 10 chr1 154878164 154878474 -42316958 - ORR1A4 LTR MaLR 0 329 4 8 1766 279 289 40 0 chr1 154879409 154879485 -42315947 - Charlie12 DNA MER1_type -2794 79 1 8 1766 237 173 73 85 chr1 154879510 154879592 -42315840 - MLT1D LTR MaLR -262 243 163 8 1766 581 276 120 111 chr1 154880674 154881016 -42314416 - ORR1E LTR MaLR -7 352 8 8 1766 371 250 22 11 chr1 154881528 154881617 -42313815 + B4A SINE B4 2 91 -201 8 1766 1274 52 29 0 chr1 154881619 154881792 -42313640 + B2_Mm1t SINE B2 16 193 0 8 1766 1393 214 103 55 chr1 154881801 154882217 -42313215 + RMER10A LTR ERVL 7 442 0 8 1766 366 264 0 32 chr1 154882340 154882434 -42312998 + RSINE1 SINE B4 75 165 0 8 1766 241 231 15 44 chr1 154882888 154882956 -42312476 + C-rich Low_complexity Low_complexity 6 71 0 8 1766 2292 74 11 88 chr1 154883855 154884102 -42311330 - ORR1A2 LTR MaLR 0 327 102 8 1766 1149 75 7 0 chr1 154884102 154884249 -42311183 - B1_Mus1 SINE Alu 0 148 1 8 1766 2292 74 11 88 chr1 154884249 154884355 -42311077 - ORR1A2 LTR MaLR -226 101 1 8 1766 260 241 0 0 chr1 154884385 154884439 -42310993 + CT-rich Low_complexity Low_complexity 4 57 0 8 1766 294 360 79 11 chr1 154884646 154884866 -42310566 - MIR SINE MIR -28 234 3 8 1766 2142 127 107 0 chr1 154885736 154886091 -42309341 - ORR1B1 LTR MaLR 0 394 2 8 1766 1251 27 7 0 chr1 154886193 154886340 -42309092 - B1_Mus1 SINE Alu 0 148 1 8 1766 222 250 39 0 chr1 154886403 154886455 -42308977 - B1F2 SINE Alu -95 54 1 8 1766 258 143 0 0 chr1 154886478 154886527 -42308905 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1766 576 116 0 0 chr1 154886527 154886613 -42308819 + ORR1B1 LTR MaLR 309 394 0 8 1766 259 58 37 37 chr1 154886623 154886677 -42308755 + (CAGAGA)n Simple_repeat Simple_repeat 1 54 0 8 1766 1016 123 7 0 chr1 154888674 154888820 -42306612 + B1_Mus1 SINE Alu 1 147 -1 8 1766 243 0 0 0 chr1 154888880 154888907 -42306525 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1766 249 352 11 11 chr1 154889258 154889347 -42306085 + L2b LINE L2 3256 3344 -31 8 1766 440 330 40 64 chr1 154890405 154890732 -42304700 - L2 LINE L2 -806 2613 2295 8 1766 212 250 0 19 chr1 154891516 154891569 -42303863 + CT-rich Low_complexity Low_complexity 4 55 0 8 1766 353 292 18 9 chr1 154891601 154891715 -42303717 - Tigger5 DNA MER2_type -1 2405 2291 8 1766 248 270 16 0 chr1 154891711 154891774 -42303658 - Tigger5 DNA MER2_type -2164 242 179 8 1766 261 0 0 0 chr1 154892082 154892111 -42303321 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1766 510 336 73 17 chr1 154892114 154892347 -42303085 - B4 SINE B4 -5 287 42 8 1766 220 358 0 0 chr1 154892886 154892953 -42302479 + polypurine Low_complexity Low_complexity 2 68 0 8 1766 196 140 19 39 chr1 154892960 154893012 -42302420 + GA-rich Low_complexity Low_complexity 5 55 0 8 1766 240 254 15 15 chr1 154893085 154893153 -42302279 + GA-rich Low_complexity Low_complexity 2 69 0 8 1766 255 239 27 27 chr1 154893972 154894058 -42301374 + GA-rich Low_complexity Low_complexity 1 86 0 8 1766 702 225 97 30 chr1 154894700 154894831 -42300601 + B3A SINE B2 2 147 -51 8 1766 2383 128 76 10 chr1 154894831 154895226 -42300206 - MTC LTR MaLR 0 421 1 8 1766 702 225 97 30 chr1 154895226 154895259 -42300173 + B3A SINE B2 148 177 -21 8 1766 357 24 0 0 chr1 154895961 154896003 -42299429 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1766 201 224 0 0 chr1 154896057 154896115 -42299317 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 8 1766 346 306 73 30 chr1 154896116 154896281 -42299151 - L1MCa LINE L1 -4546 1962 1791 8 1766 261 0 0 0 chr1 154896532 154896561 -42298871 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1766 289 176 0 38 chr1 154897951 154898004 -42297428 - PB1D10 SINE Alu -4 113 63 8 1766 1309 27 0 0 chr1 154898033 154898180 -42297252 - B1_Mus1 SINE Alu 0 148 2 8 1766 1251 54 0 0 chr1 154898963 154899111 -42296321 + B1_Mus1 SINE Alu 1 148 0 8 1766 436 231 104 37 chr1 154899818 154899953 -42295479 + ID_B1 SINE B4 81 224 0 8 1766 211 276 0 65 chr1 154900048 154900110 -42295322 - MIR SINE MIR -166 96 39 8 1766 417 86 0 0 chr1 154900658 154900716 -42294716 + (CTAA)n Simple_repeat Simple_repeat 3 60 0 8 1766 403 364 40 0 chr1 154900820 154900971 -42294461 - RSINE1 SINE B4 -6 159 3 8 1766 26 0 0 0 chr1 154900978 154901004 -42294428 + AT_rich Low_complexity Low_complexity 1 26 0 8 1766 225 65 0 0 chr1 154901139 154901170 -42294262 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1766 594 232 106 28 chr1 154902233 154902375 -42293057 - RSINE1 SINE B4 -11 154 2 8 1766 1240 48 0 0 chr1 154902781 154902928 -42292504 + B1_Mus2 SINE Alu 1 147 0 8 1766 244 233 0 0 chr1 154903010 154903053 -42292379 - tRNA-Ala-GCY_ tRNA tRNA -1 74 32 8 1766 340 279 9 63 chr1 154903086 154903197 -42292235 - PB1D10 SINE Alu -8 109 5 8 1766 487 316 62 11 chr1 154903196 154903372 -42292060 - MER20 DNA MER1_type -28 191 7 8 1766 360 0 0 0 chr1 154903625 154903665 -42291767 + (TTTCC)n Simple_repeat Simple_repeat 1 40 0 8 1766 1103 67 0 58 chr1 154903666 154903857 -42291575 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 8 1766 390 21 0 0 chr1 154903882 154903929 -42291503 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 8 1766 950 143 7 0 chr1 154903940 154904087 -42291345 - B1_Mur3 SINE Alu -1 148 1 8 1766 504 234 57 82 chr1 154903945 154904103 -42291329 - B4 SINE B4 -72 220 67 8 1766 263 241 175 53 chr1 154904088 154904202 -42291230 - B1F SINE Alu -1 148 21 8 1766 249 108 0 0 chr1 154904734 154904771 -42290661 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1766 540 200 94 17 chr1 154905059 154905176 -42290256 - B1F2 SINE Alu -1 148 23 8 1766 189 0 0 0 chr1 154905264 154905285 -42290147 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1766 263 310 7 52 chr1 154905802 154905938 -42289494 - L1MC LINE L1 -1982 5900 5771 8 1766 222 152 0 21 chr1 154905947 154905994 -42289438 + T-rich Low_complexity Low_complexity 3 48 0 8 1766 415 363 40 36 chr1 154906000 154906171 -42289261 - L1M5 LINE L1 -381 5743 5573 8 1766 2711 46 61 0 chr1 154906171 154906497 -42288935 + ORR1A0 LTR MaLR 1 346 0 8 1766 415 363 40 36 chr1 154906497 154906602 -42288830 - L1M5 LINE L1 -552 5572 5466 8 1766 341 180 184 29 chr1 154907271 154907374 -42288058 - PB1D9 SINE Alu -1 119 1 8 1766 224 240 24 96 chr1 154907559 154907642 -42287790 - ID4_ SINE ID -6 77 1 8 1766 968 140 7 0 chr1 154907676 154907819 -42287613 + B1_Mur4 SINE Alu 1 144 -6 8 1766 252 349 52 52 chr1 154907837 154907973 -42287459 - MIRb SINE MIR -91 177 42 8 1766 451 216 206 15 chr1 154908029 154908165 -42287267 - MLT1D LTR MaLR -341 164 3 8 1766 288 162 0 54 chr1 154908413 154908524 -42286908 + (TG)n Simple_repeat Simple_repeat 1 105 0 8 1766 498 315 6 30 chr1 154908526 154908693 -42286739 - RSINE1 SINE B4 0 165 3 8 1766 1236 54 0 0 chr1 154909238 154909385 -42286047 + B1_Mm SINE Alu 1 147 0 8 1766 306 0 0 0 chr1 154909385 154909419 -42286013 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1766 246 253 273 11 chr1 154909502 154909590 -42285842 + PB1D9 SINE Alu 2 112 -8 8 1766 249 139 0 0 chr1 154909630 154909673 -42285759 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1766 518 239 36 29 chr1 154910463 154910601 -42284831 + B1F SINE Alu 11 149 0 8 1766 213 94 0 0 chr1 154910945 154910977 -42284455 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1766 824 171 125 12 chr1 154910977 154911137 -42284295 - B3A SINE B2 -16 182 5 8 1766 314 303 30 0 chr1 154911147 154911246 -42284186 - L1MA5 LINE L1 -4 6296 6195 8 1766 392 257 21 7 chr1 154911374 154911471 -42283961 - PB1 SINE Alu -4 123 28 8 1766 258 265 171 68 chr1 154911480 154911626 -42283806 - MER74B LTR ERVL -392 230 70 8 1766 516 212 27 87 chr1 154911628 154911644 -42283788 - B1F SINE Alu -1 148 137 8 1766 844 137 286 0 chr1 154911644 154911819 -42283613 + URR1A DNA MER1_type 1 225 -1 8 1766 516 212 27 87 chr1 154911819 154911952 -42283480 - B1F SINE Alu -13 136 8 8 1766 299 283 27 68 chr1 154911821 154911969 -42283463 - ID_B1 SINE B4 -10 214 73 8 1766 188 329 14 0 chr1 154912132 154912202 -42283230 + MIRm SINE MIR 197 267 -9 8 1766 192 77 0 0 chr1 154913252 154913278 -42282154 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1766 237 267 15 153 chr1 154913377 154913514 -42281918 + LTR65 LTR ERV1 182 299 -370 8 1766 1138 96 0 37 chr1 154913528 154913691 -42281741 + B2_Mm2 SINE B2 2 158 -37 8 1766 418 269 63 42 chr1 154913823 154914121 -42281311 - L1MD LINE L1 -1429 4717 4533 8 1766 909 146 21 0 chr1 154914182 154914326 -42281106 + B1_Mur4 SINE Alu 4 150 0 8 1766 234 265 0 0 chr1 154914338 154914387 -42281045 + A-rich Low_complexity Low_complexity 4 52 0 8 1766 253 247 99 39 chr1 154914387 154914568 -42280864 - L1MD LINE L1 -1812 4334 4143 8 1766 759 211 0 0 chr1 154914568 154914734 -42280698 + CT-rich Low_complexity Low_complexity 1 166 0 8 1766 672 298 70 0 chr1 154914734 154915036 -42280396 - L1MD LINE L1 -1954 4192 3870 8 1766 1399 174 13 0 chr1 154915041 154915273 -42280159 + MTD LTR MaLR 6 240 -179 8 1766 3284 123 108 9 chr1 154915273 154915601 -42279831 - RMER6D LTR ERVK 0 720 337 8 1766 510 17 0 0 chr1 154915601 154915660 -42279772 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1766 297 0 0 0 chr1 154915661 154915694 -42279738 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1766 3284 123 108 9 chr1 154915694 154915921 -42279511 - RMER6D LTR ERVK -384 336 109 8 1766 288 0 0 0 chr1 154916359 154916391 -42279041 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1766 632 256 125 23 chr1 154917032 154917208 -42278224 + B3A SINE B2 3 196 -2 8 1766 513 141 0 0 chr1 154917208 154917293 -42278139 + (CA)n Simple_repeat Simple_repeat 1 85 0 9 1766 1323 266 41 47 chr1 154917293 154917656 -42277776 + ORR1D2 LTR MaLR 1 361 -9 9 1766 658 212 14 39 chr1 154917640 154917809 -42277623 + B3 SINE B2 20 181 -14 9 1766 852 273 116 66 chr1 154917857 154918236 -42277196 + L1MC2 LINE L1 5454 5841 -503 9 1766 2051 146 183 0 chr1 154918236 154918592 -42276840 - MTC LTR MaLR 0 421 1 9 1766 852 273 116 66 chr1 154918592 154918754 -42276678 + L1MC2 LINE L1 5842 6022 -322 9 1766 299 227 93 0 chr1 154919276 154919373 -42276059 + L1MC2 LINE L1 6033 6138 -1647 9 1766 360 280 51 121 chr1 154919736 154919951 -42275481 + B4A SINE B4 13 212 -80 9 1766 430 302 65 58 chr1 154919940 154920118 -42275314 + B3A SINE B2 28 200 -16 9 1766 231 222 175 0 chr1 154920169 154920232 -42275200 + B4A SINE B4 217 290 -2 9 1766 567 225 0 0 chr1 154921490 154921628 -42273804 + (CA)n Simple_repeat Simple_repeat 1 138 0 9 1766 729 173 45 21 chr1 154922786 154922951 -42272481 + B3A SINE B2 2 194 -1 9 1766 197 229 0 0 chr1 154923856 154923891 -42271541 - MIR SINE MIR -60 148 114 9 1766 626 247 49 37 chr1 154924475 154924639 -42270793 + ID_B1 SINE B4 2 167 -57 9 1766 2755 10 39 0 chr1 154925061 154925371 -42270061 - RLTRETN_Mm LTR ERVK 0 322 1 9 220 39340 25 12 6 chr1 154925371 154930187 -42265245 - MMETn-int LTR ERVK 0 4844 1 9 1767 2932 12 0 0 chr1 154930187 154930509 -42264923 - RLTRETN_Mm LTR ERVK 0 322 1 9 1767 369 0 0 0 chr1 154931071 154931112 -42264320 + (CATA)n Simple_repeat Simple_repeat 4 44 0 9 1767 385 200 122 0 chr1 154931163 154931253 -42264179 - MLT1I LTR MaLR 0 411 311 9 1767 225 0 0 0 chr1 154931287 154931312 -42264120 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1767 259 23 0 65 chr1 154932841 154932887 -42262545 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 1767 691 172 69 15 chr1 154932903 154933033 -42262399 + B1_Mus2 SINE Alu 11 147 0 9 1767 21 0 0 0 chr1 154933047 154933068 -42262364 + AT_rich Low_complexity Low_complexity 1 21 0 9 1767 193 319 85 0 chr1 154933177 154933296 -42262136 - MIRc SINE MIR -143 133 5 9 1767 230 230 19 29 chr1 154933687 154933790 -42261642 + GA-rich Low_complexity Low_complexity 4 105 0 9 1767 190 263 35 0 chr1 154933879 154933936 -42261496 - MIRb SINE MIR -147 121 63 9 1767 1161 148 117 15 chr1 154934186 154934391 -42261041 + URR1A DNA MER1_type 1 226 0 9 1767 276 324 144 0 chr1 154934424 154934535 -42260897 + PB1 SINE Alu 1 127 0 9 1767 425 300 88 70 chr1 154934865 154935216 -42260216 - ORR1E LTR MaLR 0 379 2 9 1767 1023 52 5 0 chr1 154935237 154935378 -42260054 + B1_Mus1 SINE Alu 3 150 0 9 1767 311 208 55 82 chr1 154935465 154935575 -42259857 + L1ME4a LINE L1 5985 6091 -33 9 1767 966 18 0 0 chr1 154935667 154935779 -42259653 + (TTCC)n Simple_repeat Simple_repeat 4 115 0 9 1767 235 229 13 79 chr1 154936067 154936143 -42259289 + MLT1A0 LTR MaLR 22 92 -316 9 1767 380 311 17 2 chr1 154936277 154936408 -42259024 + MLT1A0 LTR MaLR 248 374 -16 9 1767 1630 47 0 0 chr1 154936461 154936653 -42258779 + B2_Mm1t SINE B2 2 193 0 9 1767 639 39 0 0 chr1 154937513 154937591 -42257841 + (TCTCCC)n Simple_repeat Simple_repeat 5 82 0 9 1767 448 280 143 42 chr1 154939733 154939901 -42255531 - MER20 DNA MER1_type 0 219 35 9 1767 180 0 0 0 chr1 154940527 154940547 -42254885 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1767 495 171 142 9 chr1 154940764 154940870 -42254562 + ID_B1 SINE B4 102 221 -3 9 1767 274 151 98 0 chr1 154941906 154941982 -42253450 - B1_Mur2 SINE Alu -5 144 46 9 1767 423 0 0 0 chr1 154942129 154942176 -42253256 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1767 508 304 214 21 chr1 154942214 154942503 -42252929 - LTR31 LTR ERV1 -148 471 127 9 1767 272 279 12 12 chr1 154942931 154943011 -42252421 + MIR SINE MIR 112 191 -71 9 1767 622 260 47 14 chr1 154943139 154943321 -42252111 - ID_B1 SINE B4 -4 220 30 9 1767 536 229 9 9 chr1 154943933 154944043 -42251389 + B3A SINE B2 1 110 -88 9 1767 255 248 135 60 chr1 154944043 154944066 -42251366 + B4A SINE B4 1 143 -149 9 1767 207 69 0 0 chr1 154944273 154944302 -42251130 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 9 1767 231 292 125 0 chr1 154944623 154944695 -42250737 + ID4_ SINE ID 3 83 0 9 1767 895 190 126 20 chr1 154944721 154944920 -42250512 + ID_B1 SINE B4 1 220 -4 9 1767 819 119 0 0 chr1 154944921 154945047 -42250385 + (GAA)n Simple_repeat Simple_repeat 3 128 0 9 1767 1302 80 17 17 chr1 154945051 154945229 -42250203 + B2_Mm2 SINE B2 4 181 -14 9 1767 1145 217 146 15 chr1 154946064 154946331 -42249101 - MTEb LTR MaLR -57 322 21 9 1767 243 0 0 0 chr1 154946461 154946488 -42248944 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1767 244 261 107 90 chr1 154946896 154946923 -42248509 - B2_Mm2 SINE B2 -11 184 5 9 1767 473 299 67 40 chr1 154946923 154947073 -42248359 - RSINE1 SINE B4 -6 159 6 9 1767 278 255 137 11 chr1 154947086 154947181 -42248251 - PB1D10 SINE Alu -7 110 4 9 1767 256 263 123 36 chr1 154947186 154947324 -42248108 - L2a LINE L2 0 3426 3277 9 1767 550 257 199 0 chr1 154947407 154947543 -42247889 + RSINE1 SINE B4 3 165 0 9 1767 24 0 0 0 chr1 154948904 154948928 -42246504 + AT_rich Low_complexity Low_complexity 1 24 0 9 1767 578 206 9 29 chr1 154948991 154949096 -42246336 - PB1D10 SINE Alu -6 111 9 9 1767 545 0 15 0 chr1 154949124 154949189 -42246243 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 9 1767 1018 83 38 0 chr1 154949191 154949324 -42246108 - B1_Mur3 SINE Alu -11 138 1 9 1767 250 311 66 11 chr1 154949501 154949592 -42245840 + MIRb SINE MIR 159 254 -14 9 1767 659 266 104 90 chr1 154950076 154950269 -42245163 - Lx9 LINE L1 -227 7417 7251 9 1767 1282 27 0 0 chr1 154950269 154950416 -42245016 - B1_Mm SINE Alu 0 147 1 9 1767 659 269 89 70 chr1 154950416 154950624 -42244808 - Lx9 LINE L1 -394 7250 6879 9 1767 835 119 35 12 chr1 154950627 154950797 -42244635 + C-rich Low_complexity Low_complexity 5 178 0 9 1767 236 171 0 0 chr1 154950797 154950838 -42244594 + CT-rich Low_complexity Low_complexity 5 45 0 9 1767 900 158 22 0 chr1 154950839 154950978 -42244454 - B1_Mus1 SINE Alu -6 142 1 9 1767 462 18 0 0 chr1 154951906 154951961 -42243471 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1767 626 244 16 8 chr1 154951989 154952117 -42243315 - RSINE1 SINE B4 -34 131 3 9 1767 204 188 0 0 chr1 154952708 154952740 -42242692 + (TCCG)n Simple_repeat Simple_repeat 2 33 0 9 1767 971 224 42 14 chr1 154953186 154953403 -42242029 - ID_B1 SINE B4 -1 223 1 9 1767 476 204 34 34 chr1 154953967 154954084 -42241348 - PB1D10 SINE Alu 0 117 1 9 1767 1410 195 102 3 chr1 154954199 154954534 -42240898 - ORR1D2 LTR MaLR 0 370 3 9 1767 221 312 152 42 chr1 154954595 154954812 -42240620 - L2 LINE L2 -1058 2361 2121 9 1767 1698 31 0 0 chr1 154955508 154955700 -42239732 - B2_Mm1a SINE B2 0 193 2 9 1767 246 328 113 78 chr1 154955724 154955866 -42239566 - MER5B DNA MER1_type -3 175 29 9 1767 471 78 0 0 chr1 154955933 154955997 -42239435 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1767 737 247 20 0 chr1 154956001 154956147 -42239285 - RSINE1 SINE B4 -14 151 3 9 1767 224 120 20 0 chr1 154956499 154956549 -42238883 + (TTTTTG)n Simple_repeat Simple_repeat 6 56 0 9 1767 871 157 7 52 chr1 154956549 154956704 -42238728 - B1_Mur3 SINE Alu 0 149 2 9 1767 756 143 0 0 chr1 154956786 154956926 -42238506 + (CA)n Simple_repeat Simple_repeat 1 140 0 9 1767 570 287 67 0 chr1 154957183 154957392 -42238040 + L1M5 LINE L1 5542 5764 -360 9 1767 366 297 71 9 chr1 154957489 154957601 -42237831 - RSINE1 SINE B4 -45 120 2 9 1767 727 274 39 17 chr1 154957669 154957847 -42237585 + B3A SINE B2 1 182 -16 9 1767 242 294 0 16 chr1 154957850 154957971 -42237461 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 9 1767 1476 59 38 0 chr1 154958047 154958233 -42237199 - B2_Mm2 SINE B2 -2 193 1 9 1767 312 205 106 13 chr1 154958235 154958313 -42237119 - ID4_ SINE ID -57 95 12 9 1767 527 276 0 0 chr1 154958503 154958608 -42236824 + PB1D10 SINE Alu 6 110 -7 9 1767 232 222 37 0 chr1 154959004 154959058 -42236374 - L2a LINE L2 0 3426 3371 9 1767 228 219 0 0 chr1 154959226 154959267 -42236165 + polypyrimidine Low_complexity Low_complexity 4 44 0 9 1767 1342 181 187 0 chr1 154959653 154959774 -42235658 - ORR1D1 LTR MaLR 0 374 241 9 1767 192 77 0 0 chr1 154959774 154959800 -42235632 + (CAGG)n Simple_repeat Simple_repeat 4 29 0 9 1767 1342 181 187 0 chr1 154959800 154959993 -42235439 - ORR1D1 LTR MaLR -134 240 3 9 1767 232 27 54 0 chr1 154960073 154960110 -42235322 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1767 779 169 53 8 chr1 154960110 154960241 -42235191 - B1_Mus1 SINE Alu -11 137 1 9 1767 455 198 25 0 chr1 154960594 154960675 -42234757 + PB1D10 SINE Alu 28 110 -7 9 1767 1094 225 34 0 chr1 154960681 154960890 -42234542 + B3 SINE B2 1 216 0 9 1767 445 216 0 22 chr1 154961161 154961251 -42234181 + RSINE1 SINE B4 11 98 -67 9 1767 236 250 189 69 chr1 154961251 154961320 -42234112 + B2_Mm2 SINE B2 10 187 -8 9 1767 629 238 16 0 chr1 154962212 154962338 -42233094 + RSINE1 SINE B4 3 130 -35 9 1767 403 18 36 0 chr1 154962348 154962404 -42233028 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1767 184 261 22 0 chr1 154962444 154962490 -42232942 - MIRb SINE MIR -157 111 65 9 1767 428 0 0 19 chr1 154963354 154963407 -42232025 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1767 224 325 39 0 chr1 154964443 154964520 -42230912 - MIR3 SINE MIR -47 161 82 9 1767 205 138 0 0 chr1 154965606 154965635 -42229797 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 9 1767 545 149 73 18 chr1 154965716 154965825 -42229607 + PB1D10 SINE Alu 3 117 0 9 1767 27 0 0 0 chr1 154966180 154966207 -42229225 + AT_rich Low_complexity Low_complexity 1 27 0 1 1767 434 287 20 0 chr1 154966554 154966655 -42228777 + RSINE1 SINE B4 12 114 -51 1 1767 464 48 16 0 chr1 154966655 154966718 -42228714 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1767 514 253 19 54 chr1 154967123 154967314 -42228118 + B3 SINE B2 6 187 -8 1 1767 520 262 16 8 chr1 154967395 154967522 -42227910 - ID_B1 SINE B4 -6 218 91 1 1767 245 228 13 0 chr1 154967866 154967945 -42227487 + CT-rich Low_complexity Low_complexity 2 81 0 1 1767 513 47 0 0 chr1 154968170 154968234 -42227198 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1767 979 223 34 14 chr1 154968945 154969154 -42226278 - ID_B1 SINE B4 0 224 12 1 1767 212 369 12 12 chr1 154969080 154969165 -42226267 - BC1_Mm scRNA scRNA -67 85 1 1 1767 243 330 204 10 chr1 154969300 154969398 -42226034 + MLT1J1 LTR MaLR 161 277 -167 1 1767 337 252 209 16 chr1 154970239 154970368 -42225064 + L2a LINE L2 3273 3426 0 1 1767 285 51 0 0 chr1 154972123 154972162 -42223270 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1767 201 390 42 17 chr1 154972518 154972638 -42222794 + MIRb SINE MIR 125 247 -21 1 1767 479 266 76 17 chr1 154973067 154973239 -42222193 - B3A SINE B2 -16 182 1 1 1767 404 284 57 88 chr1 154975355 154975548 -42219884 + MLT1C LTR MaLR 61 247 -220 1 1767 238 328 66 41 chr1 154975574 154975816 -42219616 + MLT1C LTR MaLR 171 418 -49 1 1767 180 111 0 0 chr1 154976297 154976324 -42219108 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1767 188 291 219 49 chr1 154976871 154976994 -42218438 - MIR3 SINE MIR -32 176 33 1 1767 246 326 97 0 chr1 154979152 154979235 -42216197 - PB1D10 SINE Alu -13 107 15 1 1767 311 228 0 11 chr1 154979239 154979332 -42216100 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 1767 236 263 75 66 chr1 154979351 154979362 -42216070 + B4 SINE B4 80 186 -106 1 1767 269 256 74 53 chr1 154979362 154979396 -42216036 + PB1D9 SINE Alu 1 59 -61 1 1767 271 146 0 0 chr1 154979396 154979437 -42215995 + MT2B LTR ERVL 197 237 -364 1 1767 269 256 74 53 chr1 154979437 154979457 -42215975 + PB1D9 SINE Alu 60 97 -23 1 1767 261 83 0 0 chr1 154979765 154979801 -42215631 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 1767 258 232 130 0 chr1 154982238 154982307 -42213125 + B1F2 SINE Alu 6 83 -66 1 1767 286 306 0 0 chr1 154982334 154982419 -42213013 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1767 498 326 110 21 chr1 154982432 154982623 -42212809 - B4A SINE B4 0 292 85 1 1767 21 0 0 0 chr1 154982708 154982729 -42212703 + AT_rich Low_complexity Low_complexity 1 21 0 1 1767 1274 118 5 21 chr1 154982764 154982955 -42212477 - B2_Mm1a SINE B2 -5 188 1 1 1767 411 274 0 17 chr1 154983164 154983279 -42212153 - PB1D10 SINE Alu -4 113 1 1 1767 377 296 168 11 chr1 154984583 154984774 -42210658 + MIR SINE MIR 13 233 -29 1 1767 618 261 33 148 chr1 154984796 154985039 -42210393 + ID_B1 SINE B4 1 215 -9 1 1767 1116 225 9 0 chr1 154985090 154985303 -42210129 + B3 SINE B2 1 215 -1 1 1767 418 231 182 0 chr1 154985439 154985560 -42209872 - B1F SINE Alu -6 143 1 1 1767 1707 222 72 23 chr1 154985641 154986029 -42209403 - MTD LTR MaLR 0 419 13 1 1767 464 286 90 28 chr1 154986381 154986525 -42208907 - RSINE1 SINE B4 0 165 13 1 1767 360 0 0 0 chr1 154986526 154986566 -42208866 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1767 645 199 0 0 chr1 154986567 154986713 -42208719 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 1767 527 184 31 0 chr1 154987774 154987872 -42207560 - PB1D7 SINE Alu -17 103 3 1 1767 225 0 0 0 chr1 154988324 154988349 -42207083 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1767 335 200 18 0 chr1 154988569 154988624 -42206808 + HAL1-3A_ME LINE L1 1975 2030 -828 1 1767 2726 86 11 8 chr1 154989016 154989380 -42206052 + ORR1B2 LTR MaLR 2 366 -1 1 1767 3633 65 76 2 chr1 154989621 154990097 -42205335 - L1Md_F2 LINE L1 0 6582 6072 1 1767 671 262 9 118 chr1 154990138 154990290 -42205142 + ID_B1 SINE B4 5 157 -67 1 1767 850 229 25 25 chr1 154990290 154990487 -42204945 + B3A SINE B2 2 198 0 1 1767 671 262 9 118 chr1 154990487 154990563 -42204869 + ID_B1 SINE B4 158 208 -16 1 1767 458 241 8 49 chr1 154991912 154992034 -42203398 + B1F2 SINE Alu 5 121 -28 1 1767 407 321 59 74 chr1 154992059 154992315 -42203117 + MIRb SINE MIR 9 260 -8 1 1767 276 191 47 16 chr1 154993297 154993361 -42202071 - ID4 SINE ID -3 80 15 1 1767 202 273 0 18 chr1 154994014 154994070 -42201362 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1767 224 200 0 14 chr1 154994070 154994141 -42201291 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1767 288 77 0 0 chr1 154994154 154994193 -42201239 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1767 227 269 75 0 chr1 154994204 154994271 -42201161 + PB1D9 SINE Alu 34 105 -15 1 1767 668 208 105 23 chr1 154994284 154994456 -42200976 + B3A SINE B2 2 187 -11 1 1767 480 349 36 72 chr1 154994479 154994646 -42200786 - RSINE1 SINE B4 -2 163 3 1 1767 1025 117 14 7 chr1 154994656 154994802 -42200630 - B1_Mur2 SINE Alu 0 149 3 1 1767 1062 91 0 7 chr1 154994992 154995125 -42200307 + B1_Mus1 SINE Alu 6 138 -10 1 1767 222 62 0 0 chr1 154995125 154995157 -42200275 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1767 264 219 62 15 chr1 154995180 154995245 -42200187 + B3 SINE B2 63 130 -86 1 1767 195 281 74 66 chr1 154995830 154995952 -42199480 + L2b LINE L2 3201 3323 -52 1 1767 1182 264 10 27 chr1 154996622 154996918 -42198514 - B4A SINE B4 0 292 2 1 1767 198 298 29 96 chr1 154996964 154997068 -42198364 - MIRb SINE MIR -117 151 55 1 1767 216 0 0 0 chr1 154997119 154997143 -42198289 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1 1767 1169 76 6 6 chr1 154997143 154997302 -42198130 - B2_Mm1a SINE B2 -33 160 2 1 1767 890 210 0 70 chr1 154997328 154997528 -42197904 + B3A SINE B2 1 186 -12 1 1767 250 250 35 12 chr1 154998184 154998269 -42197163 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 1 1767 710 242 38 0 chr1 154998278 154998435 -42196997 - RSINE1 SINE B4 0 165 3 1 1767 611 277 0 0 chr1 154998891 154998971 -42196461 + ID SINE ID 2 81 -143 1 1767 221 337 100 20 chr1 154998971 154999071 -42196361 + PB1D10 SINE Alu 1 108 -9 1 1767 582 217 0 9 chr1 155000342 155000449 -42194983 + ID_B1 SINE B4 80 185 -39 1 1767 544 235 0 57 chr1 155000344 155000466 -42194966 + PB1D10 SINE Alu 1 115 -2 2 1767 273 333 30 38 chr1 155000452 155000583 -42194849 + MT2B LTR ERVL 134 263 -338 3 1767 727 157 9 9 chr1 155000497 155000613 -42194819 + B1F SINE Alu 24 139 -10 4 1767 378 0 0 0 chr1 155000623 155000665 -42194767 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1767 402 253 0 0 chr1 155000667 155000754 -42194678 - B3A SINE B2 -91 107 21 6 1767 234 0 0 0 chr1 155001345 155001371 -42194061 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1767 23 33 0 0 chr1 155001918 155001948 -42193484 + AT_rich Low_complexity Low_complexity 1 30 0 8 1767 1443 291 38 15 chr1 155002040 155002573 -42192859 - L1MB8 LINE L1 -10 6168 5624 9 1767 416 224 60 31 chr1 155003943 155004042 -42191390 + PB1D10 SINE Alu 16 115 -2 1 1767 252 355 74 9 chr1 155004387 155004495 -42190937 - LTR31 LTR ERV1 -1 618 504 1 1767 188 310 94 31 chr1 155005213 155005373 -42190059 + MIR SINE MIR 20 189 -73 1 1767 948 254 126 35 chr1 155005457 155005639 -42189793 + MTD LTR MaLR 1 205 -214 1 1767 1479 72 0 10 chr1 155005639 155005834 -42189598 + B2_Mm2 SINE B2 1 193 -2 1 1767 948 236 149 32 chr1 155005834 155005934 -42189498 + MTD LTR MaLR 206 324 -95 1 1767 285 266 80 60 chr1 155006439 155006539 -42188893 + B1F SINE Alu 5 106 -43 1 1767 259 290 105 68 chr1 155006539 155006572 -42188860 + ID_B1 SINE B4 86 223 -1 1 1767 563 240 149 46 chr1 155006663 155006925 -42188507 - B4 SINE B4 0 292 4 1 1767 898 238 33 14 chr1 155007120 155007333 -42188099 - ID_B1 SINE B4 -7 217 1 1 1767 530 278 112 0 chr1 155007498 155007703 -42187729 - L1MA4 LINE L1 -364 5936 5709 1 1767 937 146 12 35 chr1 155007958 155008128 -42187304 + URR1A DNA MER1_type 56 221 -5 2 1767 181 293 0 0 chr1 155008291 155008332 -42187100 + MIRm SINE MIR 217 257 -19 2 1767 384 119 0 0 chr1 155008738 155008797 -42186635 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 2 1767 310 265 15 0 chr1 155008802 155008870 -42186562 + ID4_ SINE ID 4 72 -11 2 1767 270 271 0 41 chr1 155009336 155009409 -42186023 - PB1 SINE Alu 0 127 58 2 1767 519 264 36 0 chr1 155009404 155009544 -42185888 + B4A SINE B4 143 287 -5 2 1767 1258 41 0 0 chr1 155009857 155010004 -42185428 + B1_Mm SINE Alu 1 147 0 2 1767 26 0 0 0 chr1 155010004 155010030 -42185402 + AT_rich Low_complexity Low_complexity 1 26 0 2 1767 352 264 43 11 chr1 155010035 155010127 -42185305 + B1F SINE Alu 22 116 -33 2 1767 321 311 0 0 chr1 155010142 155010216 -42185216 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 2 1767 390 42 0 0 chr1 155010756 155010804 -42184628 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1767 670 252 0 0 chr1 155010811 155010934 -42184498 - ID_B1 SINE B4 -20 204 82 3 1767 247 345 7 75 chr1 155010828 155010975 -42184457 + YREP_Mm Unknown Unknown 212 348 -1464 3 1767 215 350 89 24 chr1 155011093 155011216 -42184216 - MIR SINE MIR -131 131 1 3 1767 203 294 119 0 chr1 155011216 155011311 -42184121 + MIRb SINE MIR 46 153 -115 3 1767 210 156 0 0 chr1 155012260 155012305 -42183127 + GA-rich Low_complexity Low_complexity 3 47 0 3 1767 201 39 0 0 chr1 155012508 155012534 -42182898 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 3 1767 751 181 60 0 chr1 155012535 155012668 -42182764 - ID_B1 SINE B4 0 224 84 3 1767 441 0 0 0 chr1 155012769 155012818 -42182614 + (CCTA)n Simple_repeat Simple_repeat 1 49 0 3 1767 255 298 223 0 chr1 155012839 155012933 -42182499 + PB1 SINE Alu 4 118 -9 3 1767 378 273 0 0 chr1 155012950 155013027 -42182405 + ID4_ SINE ID 7 83 0 4 1767 237 214 27 41 chr1 155013178 155013251 -42182181 + CT-rich Low_complexity Low_complexity 4 75 0 4 1767 336 388 21 53 chr1 155013543 155013783 -42181649 - MER102a DNA MER1_type -70 260 44 4 1767 270 288 0 0 chr1 155014148 155014207 -42181225 - ID4 SINE ID -20 63 5 4 1767 711 240 0 33 chr1 155014689 155014840 -42180592 - RSINE1 SINE B4 0 165 20 4 1767 724 223 179 12 chr1 155014940 155015105 -42180327 + RLTR20C LTR ERVK 216 443 -91 4 1767 360 0 0 0 chr1 155015105 155015145 -42180287 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1767 477 0 0 0 chr1 155015145 155015197 -42180235 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1767 724 220 187 13 chr1 155015197 155015268 -42180164 + RLTR20C LTR ERVK 444 527 -7 4 1767 446 92 15 0 chr1 155015275 155015340 -42180092 - B1_Mus2 SINE Alu -73 74 9 4 1767 338 176 29 0 chr1 155015282 155015350 -42180082 - B4A SINE B4 -140 152 83 4 1767 210 374 99 37 chr1 155015355 155015627 -42179805 - L3 LINE CR1 -453 4036 3748 5 1767 656 261 8 0 chr1 155015836 155015970 -42179462 - ID_B1 SINE B4 -2 222 88 5 1767 613 244 52 0 chr1 155016787 155016922 -42178510 + B1F SINE Alu 2 143 -6 5 1767 588 106 0 0 chr1 155016922 155017016 -42178416 + (GGGA)n Simple_repeat Simple_repeat 1 94 0 5 1767 306 0 0 0 chr1 155018113 155018147 -42177285 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1767 987 247 87 66 chr1 155018547 155018764 -42176668 + B4 SINE B4 1 229 -63 5 1767 230 0 0 32 chr1 155018764 155018795 -42176637 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1767 987 247 87 66 chr1 155018795 155018863 -42176569 + B4 SINE B4 230 292 0 5 1767 183 162 0 0 chr1 155018893 155018930 -42176502 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1767 580 80 54 0 chr1 155018932 155019044 -42176388 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 5 1767 581 313 12 41 chr1 155019071 155019241 -42176191 + RSINE1 SINE B4 1 165 0 5 1767 530 198 29 4 chr1 155020130 155020271 -42175161 + B1F SINE Alu 1 148 -1 6 1767 406 183 14 0 chr1 155021034 155021105 -42174327 + B3 SINE B2 145 216 0 6 1767 407 284 0 27 chr1 155021148 155021260 -42174172 + RSINE1 SINE B4 57 165 0 6 1767 2351 66 53 0 chr1 155021298 155021602 -42173830 + L1_Mus2 LINE L1 6247 6566 0 6 1767 236 263 78 13 chr1 155021717 155021794 -42173638 + ID4_ SINE ID 2 83 0 6 1767 183 114 0 0 chr1 155022432 155022467 -42172965 + (C)n Simple_repeat Simple_repeat 1 35 0 6 1767 431 284 0 19 chr1 155022803 155022907 -42172525 + PB1D10 SINE Alu 8 109 -8 6 1767 285 206 50 80 chr1 155023187 155023287 -42172145 + L2 LINE L2 2829 2925 -494 6 1767 198 188 24 24 chr1 155023336 155023418 -42172014 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 6 1767 398 138 55 0 chr1 155023430 155023575 -42171857 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 6 1767 280 169 31 0 chr1 155023578 155023643 -42171789 + (TATG)n Simple_repeat Simple_repeat 1 67 0 6 1767 578 161 23 0 chr1 155023643 155023817 -42171615 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 7 1767 291 300 88 26 chr1 155023865 155023978 -42171454 - B1F SINE Alu 0 149 30 7 1767 234 128 0 0 chr1 155024356 155024395 -42171037 + (TATG)n Simple_repeat Simple_repeat 1 39 0 7 1767 1488 68 21 0 chr1 155024606 155024797 -42170635 - B2_Mm2 SINE B2 0 195 1 7 1767 408 181 14 0 chr1 155026277 155026349 -42169083 + B3 SINE B2 144 216 0 7 1767 885 247 6 0 chr1 155026362 155026540 -42168892 - B3A SINE B2 -17 181 3 7 1767 808 250 32 0 chr1 155026586 155026774 -42168658 + B3A SINE B2 1 194 -4 7 1767 327 191 0 0 chr1 155026807 155026875 -42168557 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 7 1767 1246 41 0 0 chr1 155026922 155027069 -42168363 + B1_Mm SINE Alu 1 147 0 7 1767 231 311 38 19 chr1 155027234 155027339 -42168093 + MIR3 SINE MIR 74 180 -28 7 1767 297 0 0 0 chr1 155028340 155028373 -42167059 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1767 1137 52 7 0 chr1 155028387 155028523 -42166909 + B1_Mus2 SINE Alu 1 137 -10 8 1767 324 19 18 36 chr1 155028523 155028578 -42166854 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1767 256 248 243 18 chr1 155028595 155028706 -42166726 + Kanga2_a DNA Tc2 72 207 -681 8 1767 225 262 111 86 chr1 155028896 155029013 -42166419 + PB1D7 SINE Alu 1 120 0 8 1767 1198 81 0 12 chr1 155029097 155029260 -42166172 + B2_Mm2 SINE B2 1 161 -34 8 1767 234 0 0 0 chr1 155029260 155029286 -42166146 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 8 1767 1410 53 0 4 chr1 155029286 155029536 -42165896 + (GAA)n Simple_repeat Simple_repeat 1 249 0 8 1767 409 291 103 80 chr1 155029584 155029846 -42165586 + Kanga2_a DNA Tc2 617 884 -4 8 1767 249 224 24 73 chr1 155030194 155030276 -42165156 + L2 LINE L2 2695 2772 -647 8 1767 243 342 41 99 chr1 155030621 155030727 -42164705 - MIRb SINE MIR -80 188 89 8 1767 1845 113 144 15 chr1 155030727 155031067 -42164365 + ORR1C2 LTR MaLR 1 384 0 9 1767 243 342 41 99 chr1 155031067 155031132 -42164300 - MIRb SINE MIR -180 88 27 8 1767 432 55 0 0 chr1 155031722 155031777 -42163655 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1767 336 45 0 0 chr1 155031777 155031816 -42163616 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 1767 203 302 0 16 chr1 155031839 155031903 -42163529 + MIRc SINE MIR 40 102 -166 9 1767 405 0 0 0 chr1 155033744 155033789 -42161643 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1767 1077 31 0 0 chr1 155034738 155034867 -42160565 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 9 1767 299 303 204 32 chr1 155035149 155035306 -42160126 - MIR SINE MIR -59 203 20 9 1767 373 296 75 30 chr1 155035770 155035963 -42159469 + MIR SINE MIR 38 232 -30 9 1767 425 238 50 0 chr1 155036243 155036344 -42159088 - ID_B1 SINE B4 -31 193 88 9 1767 374 311 12 6 chr1 155036600 155036765 -42158667 + L1ME1 LINE L1 5805 5970 -209 9 1767 952 264 93 41 chr1 155036845 155036921 -42158511 + B4 SINE B4 10 88 -204 1 1767 209 30 61 0 chr1 155036921 155036954 -42158478 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1767 952 264 93 41 chr1 155036954 155037146 -42158286 + B4 SINE B4 89 292 0 1 1767 208 53 26 26 chr1 155037223 155037262 -42158170 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 1 1767 4699 34 0 9 chr1 155037344 155037904 -42157528 + L1Md_F3 LINE L1 6030 6584 0 1 1767 489 188 106 100 chr1 155038093 155038253 -42157179 + B3A SINE B2 38 198 0 1 1767 180 0 0 0 chr1 155038675 155038695 -42156737 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1767 185 94 31 0 chr1 155039043 155039075 -42156357 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 1 1767 21 0 0 0 chr1 155039306 155039327 -42156105 + GC_rich Low_complexity Low_complexity 1 21 0 1 1767 237 117 16 32 chr1 155039387 155039449 -42155983 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1767 1173 42 0 40 chr1 155039897 155040046 -42155386 + B1_Mus1 SINE Alu 1 143 -5 1 1767 198 102 16 48 chr1 155040050 155040112 -42155320 + A-rich Low_complexity Low_complexity 1 60 0 1 1767 897 167 56 22 chr1 155040362 155040540 -42154892 + URR1B DNA MER1_type 42 225 0 1 1767 3505 23 5 0 chr1 155041365 155041759 -42153673 + MTA_Mm LTR MaLR 1 396 0 1 1767 327 231 64 0 chr1 155042363 155042441 -42152991 + ID_B1 SINE B4 113 195 -29 1 1767 230 175 54 140 chr1 155042441 155042456 -42152976 + PB1D10 SINE Alu 32 116 -1 1 1767 207 237 34 0 chr1 155042503 155042562 -42152870 + GA-rich Low_complexity Low_complexity 1 61 0 1 1767 396 0 0 0 chr1 155042728 155042772 -42152660 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1767 968 265 99 16 chr1 155042772 155043086 -42152346 - MT2A LTR ERVL -79 454 115 1 1767 4497 155 39 47 chr1 155043117 155043975 -42151457 - RMER13B LTR ERVK -57 851 1 1 1767 371 270 35 26 chr1 155043975 155044089 -42151343 - MT2A LTR ERVL -414 119 5 1 1767 365 149 216 31 chr1 155044134 155044231 -42151201 - PB1D7 SINE Alu -1 119 5 1 1767 333 289 111 37 chr1 155044636 155044798 -42150634 + MER58A DNA MER1_type 3 176 -48 1 1767 311 311 0 32 chr1 155045506 155045599 -42149833 + PB1D10 SINE Alu 13 102 -15 1 1767 189 107 0 0 chr1 155045632 155045660 -42149772 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 1 1767 3577 18 2 0 chr1 155045850 155046245 -42149187 + MTA_Mm LTR MaLR 1 396 0 1 1767 1260 58 87 0 chr1 155046297 155046470 -42148962 - B2_Mm1a SINE B2 -5 188 1 1 1767 527 149 287 8 chr1 155047019 155047155 -42148277 + URR1B DNA MER1_type 2 175 -50 1 1767 283 273 0 0 chr1 155047300 155047366 -42148066 - ID4 SINE ID -13 70 5 1 1767 264 243 17 142 chr1 155047392 155047512 -42147920 - PB1 SINE Alu 0 127 23 1 1767 214 94 56 19 chr1 155047512 155047566 -42147866 + A-rich Low_complexity Low_complexity 1 56 0 1 1767 259 238 173 39 chr1 155047581 155047708 -42147724 - L1MC3 LINE L1 -68 7717 7574 1 1767 233 281 16 0 chr1 155047735 155047799 -42147633 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 1 1767 298 309 18 9 chr1 155047808 155047919 -42147513 - L1MC3 LINE L1 -212 7573 7462 1 1767 308 194 0 16 chr1 155048061 155048124 -42147308 - L1MC3 LINE L1 -652 7133 7072 1 1767 211 217 22 0 chr1 155048310 155048356 -42147076 + GA-rich Low_complexity Low_complexity 2 48 0 1 1767 295 275 43 32 chr1 155048852 155048946 -42146486 + PB1D10 SINE Alu 2 96 -21 1 1767 859 209 99 0 chr1 155049132 155049314 -42146118 + B3 SINE B2 1 200 -16 1 1767 675 138 56 16 chr1 155049633 155049758 -42145674 + B3 SINE B2 1 130 -86 1 1767 270 0 0 0 chr1 155049795 155049825 -42145607 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 1767 2289 136 231 4 chr1 155050147 155050611 -42144821 - RMER4B LTR ERVK 0 585 17 1 1767 237 65 0 0 chr1 155050778 155050809 -42144623 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 1767 1275 100 0 26 chr1 155050908 155051103 -42144329 + B2_Mm2 SINE B2 2 191 -4 1 1767 189 0 0 0 chr1 155051455 155051476 -42143956 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1767 212 307 34 0 chr1 155051519 155051607 -42143825 + L2 LINE L2 873 963 -2456 1 1767 429 224 69 30 chr1 155051751 155051852 -42143580 - PB1D10 SINE Alu -14 106 2 1 1767 269 297 71 119 chr1 155051852 155051985 -42143447 + MT2B LTR ERVL 127 251 -350 1 1767 584 216 0 43 chr1 155051896 155052012 -42143420 + PB1D9 SINE Alu 10 120 0 1 1767 777 333 92 41 chr1 155052028 155052594 -42142838 + L2 LINE L2 1941 2535 -884 1 1767 362 320 49 11 chr1 155052754 155052937 -42142495 + L2 LINE L2 2742 2931 -488 1 1767 266 246 31 0 chr1 155052991 155053056 -42142376 + MIR SINE MIR 108 174 -88 1 1767 453 266 43 34 chr1 155053561 155053678 -42141754 + PB1D7 SINE Alu 3 120 0 1 1767 242 253 0 126 chr1 155054546 155054567 -42140865 - RSINE1 SINE B4 -1 164 150 1 1767 186 43 0 0 chr1 155054567 155054590 -42140842 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1767 242 253 0 126 chr1 155054590 155054663 -42140769 - RSINE1 SINE B4 -16 149 82 1 1767 346 249 5 86 chr1 155054769 155054918 -42140514 - B4A SINE B4 -137 155 23 1 1767 288 0 0 0 chr1 155055319 155055351 -42140081 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1767 488 118 13 0 chr1 155055361 155055437 -42139995 - BC1_Mm scRNA scRNA -75 77 1 1 1767 554 148 10 0 chr1 155055437 155055538 -42139894 + CT-rich Low_complexity Low_complexity 3 104 0 1 1767 496 204 20 0 chr1 155055545 155055643 -42139789 - PB1D9 SINE Alu 0 120 21 1 1767 722 269 18 31 chr1 155055670 155055885 -42139547 + ID_B1 SINE B4 2 214 -10 1 1767 423 0 0 0 chr1 155055885 155055932 -42139500 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1767 1193 180 13 35 chr1 155056531 155056761 -42138671 - URR1B DNA MER1_type 0 225 1 1 1767 257 250 0 0 chr1 155056860 155056912 -42138520 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1 1767 855 141 11 22 chr1 155056912 155057093 -42138339 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 1767 251 244 0 13 chr1 155057079 155057158 -42138274 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 1 1767 734 192 112 0 chr1 155057474 155057635 -42137797 - B3A SINE B2 -18 180 2 1 1767 478 176 30 0 chr1 155057705 155057836 -42137596 + GA-rich Low_complexity Low_complexity 2 136 0 1 220 538 301 154 18 chr1 155057860 155058260 -42137172 + L1MC4 LINE L1 6820 7274 -768 1 1768 207 0 0 0 chr1 155058260 155058283 -42137149 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1768 538 301 154 18 chr1 155058283 155058318 -42137114 + L1MC4 LINE L1 7275 7314 -728 1 1768 289 307 70 25 chr1 155058344 155058501 -42136931 + L1MC4 LINE L1 7405 7568 -474 1 1768 523 298 42 71 chr1 155058781 155059101 -42136331 - MLT1E2 LTR MaLR -179 326 1 1 1768 821 188 28 0 chr1 155059702 155059846 -42135586 + B1_Mur2 SINE Alu 1 148 -1 1 1768 404 225 9 30 chr1 155059915 155060020 -42135412 - B1F1 SINE Alu -3 146 18 1 1768 21 36 0 0 chr1 155060088 155060116 -42135316 + AT_rich Low_complexity Low_complexity 1 28 0 1 1768 340 290 161 44 chr1 155060116 155060253 -42135179 - RSINE1 SINE B4 -10 155 3 1 1768 1040 92 29 6 chr1 155060264 155060439 -42134993 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1768 194 91 0 29 chr1 155060440 155060474 -42134958 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1 1768 861 146 21 0 chr1 155060487 155060631 -42134801 - B1_Mur3 SINE Alu 0 149 3 1 1768 325 291 100 23 chr1 155060640 155060770 -42134662 + L1MC4 LINE L1 7848 7987 -8 1 1768 889 208 0 111 chr1 155061244 155061487 -42133945 - B3 SINE B2 0 216 1 1 1768 391 322 32 24 chr1 155062253 155062377 -42133055 - RSINE1 SINE B4 0 165 41 1 1768 600 234 46 15 chr1 155062424 155062554 -42132878 - B1_Mur1 SINE Alu -1 148 15 1 1768 2639 35 0 0 chr1 155063342 155063653 -42131779 - L1Md_A LINE L1 0 6582 6272 1 1768 2976 105 7 35 chr1 155063699 155064162 -42131270 + RLTR11B LTR ERVK 3 452 -1 1 1768 457 274 5 101 chr1 155064237 155064444 -42130988 - B3A SINE B2 -11 187 1 1 1768 393 306 95 53 chr1 155065320 155065582 -42129850 - B4 SINE B4 -18 274 2 1 1768 294 179 0 0 chr1 155065800 155065856 -42129576 + (ATG)n Simple_repeat Simple_repeat 2 57 0 1 1768 377 222 0 14 chr1 155065859 155065932 -42129500 + ID4_ SINE ID 2 73 -10 1 1768 21 36 0 0 chr1 155067171 155067199 -42128233 + AT_rich Low_complexity Low_complexity 1 28 0 1 1768 820 236 12 0 chr1 155068989 155069150 -42126282 - RSINE1 SINE B4 0 165 3 1 1768 3214 61 5 2 chr1 155069579 155069974 -42125458 - MTA_Mm LTR MaLR 0 396 1 1 1768 459 259 93 35 chr1 155071092 155071221 -42124211 - PB1D10 SINE Alu -2 148 3 1 1768 300 102 0 0 chr1 155071480 155071529 -42123903 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1768 621 279 0 6 chr1 155072240 155072402 -42123030 + RSINE1 SINE B4 1 161 -4 1 1768 720 231 0 0 chr1 155072550 155072680 -42122752 + B1_Mur1 SINE Alu 1 130 -19 1 1768 344 41 41 0 chr1 155072689 155072738 -42122694 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 1 1768 595 131 165 39 chr1 155074171 155074325 -42121107 - B1_Mm SINE Alu -8 141 3 1 1768 305 164 0 152 chr1 155074325 155074352 -42121080 - B4A SINE B4 -205 87 73 1 1768 453 243 0 53 chr1 155075527 155075640 -42119792 + B4A SINE B4 186 292 0 1 1768 289 320 50 0 chr1 155075606 155075706 -42119726 - RMER12 LTR ERVK -468 854 750 1 1768 4561 107 91 6 chr1 155076779 155077458 -42117974 + RMER19A LTR ERVK 1 737 0 1 1768 23 0 0 0 chr1 155078050 155078073 -42117359 + AT_rich Low_complexity Low_complexity 1 23 0 1 1768 268 189 212 4 chr1 155079290 155079377 -42116055 + B1F SINE Alu 9 111 -9 1 1768 301 239 131 100 chr1 155080942 155081072 -42114360 + ORR1E LTR MaLR 2 135 -224 1 1768 333 302 117 70 chr1 155081191 155081447 -42113985 + ORR1E LTR MaLR 89 356 -3 1 1768 236 229 32 153 chr1 155082173 155082297 -42113135 + MT2B LTR ERVL 168 276 -325 1 1768 583 207 14 43 chr1 155082186 155082327 -42113105 + B1_Mur1 SINE Alu 13 149 0 1 1768 1126 243 78 15 chr1 155082674 155083071 -42112361 + L1MA5A LINE L1 4802 5223 -920 1 1768 703 124 14 0 chr1 155083123 155083268 -42112164 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 1768 648 277 155 60 chr1 155083287 155083407 -42112025 + L1MA5A LINE L1 5321 5441 -918 1 1768 1239 54 0 0 chr1 155083407 155083554 -42111878 + B1_Mus1 SINE Alu 1 147 -1 2 1768 648 258 149 79 chr1 155083554 155084101 -42111331 + L1MA5A LINE L1 5442 6032 -268 1 1768 433 254 70 83 chr1 155084203 155084504 -42110928 + L1MA6 LINE L1 5987 6283 -17 2 1768 396 0 0 0 chr1 155085908 155085952 -42109480 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2 1768 642 66 81 45 chr1 155086188 155086299 -42109133 + B1_Mus1 SINE Alu 33 147 -1 2 1768 312 120 0 0 chr1 155087379 155087429 -42108003 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 2 1768 242 338 0 51 chr1 155087810 155087888 -42107544 - B4A SINE B4 -2 290 217 2 1768 694 174 0 158 chr1 155087908 155088079 -42107353 - B1_Mur1 SINE Alu -3 146 3 2 1768 304 229 35 148 chr1 155088079 155088159 -42107273 - MT2B2 LTR ERVL -325 259 199 2 1768 713 206 137 0 chr1 155088119 155088265 -42107167 - B4A SINE B4 -126 166 1 2 1768 1516 58 16 0 chr1 155089372 155089563 -42105869 + B2_Mm2 SINE B2 2 195 0 2 1768 306 267 145 48 chr1 155090043 155090271 -42105161 + MER33 DNA MER1_type 58 307 -17 2 1768 576 0 0 0 chr1 155090712 155090776 -42104656 + (GTGTG)n Simple_repeat Simple_repeat 1 64 0 2 1768 620 305 19 0 chr1 155091615 155091769 -42103663 - RSINE1 SINE B4 -6 159 3 2 1768 258 329 58 23 chr1 155091855 155092029 -42103403 - L2 LINE L2 -588 2831 2652 2 1768 1294 98 0 32 chr1 155093447 155093637 -42101795 + B2_Mm2 SINE B2 2 185 -10 2 1768 522 0 0 0 chr1 155093637 155093695 -42101737 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2 1768 342 80 0 0 chr1 155094786 155094836 -42100596 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1768 195 366 115 24 chr1 155095411 155095663 -42099769 + L2 LINE L2 2167 2441 -978 2 1768 463 238 10 16 chr1 155096454 155096571 -42098861 - B1F SINE Alu -5 115 2 2 1768 21 0 0 0 chr1 155097267 155097288 -42098144 + AT_rich Low_complexity Low_complexity 1 21 0 2 1768 594 227 113 30 chr1 155099330 155099498 -42095934 - B3A SINE B2 -16 182 1 2 1768 571 237 71 43 chr1 155099786 155099927 -42095505 - B1_Mur1 SINE Alu 0 149 5 2 1768 323 253 185 6 chr1 155100237 155100345 -42095087 + B1_Mur2 SINE Alu 35 149 0 2 1768 794 305 126 14 chr1 155101718 155102004 -42093428 + MER2 DNA MER2_type 28 345 0 2 1768 468 0 0 0 chr1 155102648 155102700 -42092732 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1768 1632 186 66 42 chr1 155104440 155104849 -42090583 + MTD LTR MaLR 1 419 0 2 1768 228 333 67 0 chr1 155105792 155105882 -42089550 + L2a LINE L2 3285 3380 -46 2 1768 503 318 28 40 chr1 155106024 155106201 -42089231 + MLT1H2 LTR MaLR 9 183 -306 2 1768 430 293 50 28 chr1 155106779 155106958 -42088474 + MIR SINE MIR 18 200 -62 2 1768 629 234 69 38 chr1 155107756 155107916 -42087516 + RSINE1 SINE B4 1 165 0 2 1768 213 39 0 0 chr1 155108523 155108549 -42086883 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1768 1202 54 0 0 chr1 155108549 155108696 -42086736 - B1_Mus2 SINE Alu 0 147 1 2 1768 323 200 0 0 chr1 155108975 155109030 -42086402 - ID_B1 SINE B4 -5 219 165 2 1768 513 202 193 0 chr1 155109180 155109294 -42086138 + ID_B1 SINE B4 81 216 -8 2 1768 501 32 0 0 chr1 155110406 155110469 -42084963 + (GGA)n Simple_repeat Simple_repeat 3 65 0 2 1768 234 310 89 10 chr1 155110658 155110759 -42084673 - L2a LINE L2 -10 3416 3308 2 1768 471 35 0 0 chr1 155110958 155111015 -42084417 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1768 267 258 34 53 chr1 155114995 155115122 -42080310 - L2a LINE L2 -1 3425 3249 2 1768 783 286 46 29 chr1 155115170 155115451 -42079981 + B4 SINE B4 5 290 -2 2 1768 239 328 203 23 chr1 155115517 155115829 -42079603 - L2a LINE L2 -220 3206 2834 2 1768 459 0 0 0 chr1 155115868 155115919 -42079513 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1768 213 351 51 51 chr1 155116066 155116204 -42079228 - L2a LINE L2 -609 2810 2673 2 1768 603 185 150 25 chr1 155116205 155116406 -42079026 + RMER17A2 LTR ERVK 679 887 -19 2 1768 831 177 208 0 chr1 155116672 155116898 -42078534 - Lx9 LINE L1 -1 7643 7371 2 1768 416 320 38 34 chr1 155116898 155117137 -42078295 - L2a LINE L2 -1320 2099 1860 2 1768 303 96 0 0 chr1 155117194 155117246 -42078186 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1768 321 253 48 0 chr1 155117601 155117684 -42077748 - B3A SINE B2 -98 100 14 2 1768 951 248 57 111 chr1 155117926 155118312 -42077120 + MTE2a LTR MaLR 1 365 -14 2 1768 198 0 0 0 chr1 155118985 155119007 -42076425 + (GAA)n Simple_repeat Simple_repeat 2 23 0 2 1768 188 214 23 45 chr1 155119047 155119135 -42076297 + GA-rich Low_complexity Low_complexity 5 90 0 2 1768 363 78 0 0 chr1 155119463 155119514 -42075918 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 1768 1624 255 89 30 chr1 155119568 155120104 -42075328 + Lx7 LINE L1 6719 7295 -178 2 1768 243 0 0 0 chr1 155120104 155120131 -42075301 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1768 973 329 106 32 chr1 155120131 155120275 -42075157 + Lx7 LINE L1 7296 7457 -16 2 1768 789 168 11 29 chr1 155121313 155121505 -42073927 + B3 SINE B2 6 187 -8 2 1768 1184 62 0 0 chr1 155123693 155123839 -42071593 + B1_Mm SINE Alu 2 147 0 2 1768 252 269 38 25 chr1 155123966 155124046 -42071386 + ID4 SINE ID 3 83 0 2 1768 764 249 30 30 chr1 155124112 155124315 -42071117 + B4A SINE B4 1 203 -89 2 1768 793 234 27 11 chr1 155124607 155124793 -42070639 + B4A SINE B4 45 233 -59 2 1768 1030 238 15 22 chr1 155124786 155125057 -42070375 + B4A SINE B4 6 274 -18 2 1768 474 33 0 0 chr1 155125093 155125153 -42070279 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1768 484 42 0 27 chr1 155125421 155125494 -42069938 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 2 1768 363 179 89 0 chr1 155125740 155125836 -42069596 + B1_Mur1 SINE Alu 3 149 0 2 1768 189 94 0 0 chr1 155126234 155126266 -42069166 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1768 576 0 0 0 chr1 155126758 155126822 -42068610 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1768 1259 180 106 10 chr1 155127242 155127545 -42067887 - Lx7 LINE L1 0 7696 7365 2 1768 1009 195 60 0 chr1 155128074 155128274 -42067158 + B3 SINE B2 5 216 0 2 1768 26 0 0 0 chr1 155128499 155128525 -42066907 + AT_rich Low_complexity Low_complexity 1 26 0 2 1768 437 311 30 9 chr1 155129128 155129320 -42066112 + ORR1E LTR MaLR 1 193 -191 2 1768 1206 61 0 0 chr1 155130106 155130253 -42065179 + B1_Mus2 SINE Alu 1 147 0 2 1768 325 298 94 17 chr1 155130401 155130582 -42064850 + L1M5 LINE L1 3576 3770 -2376 2 1768 613 200 66 15 chr1 155131640 155131777 -42063655 - B1_Mur3 SINE Alu 0 149 6 2 1768 285 258 52 104 chr1 155131680 155131814 -42063618 - MT2B LTR ERVL -344 257 131 2 1768 416 259 28 0 chr1 155131852 155131960 -42063472 + PB1D7 SINE Alu 1 111 -9 2 1768 570 292 86 41 chr1 155133562 155133830 -42061602 + B4A SINE B4 11 290 -2 2 1768 736 241 12 0 chr1 155133984 155134154 -42061278 + B3A SINE B2 1 172 -26 2 1768 266 273 26 0 chr1 155134230 155134307 -42061125 + PB1D7 SINE Alu 41 119 -1 2 1768 445 335 108 19 chr1 155134428 155134696 -42060736 + MER82 DNA MER2_type 115 406 -247 2 1768 387 255 123 71 chr1 155134843 155135054 -42060378 + B4 SINE B4 49 270 -22 2 1768 477 84 0 0 chr1 155135054 155135125 -42060307 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1768 1285 62 66 33 chr1 155135645 155135827 -42059605 + B2_Mm2 SINE B2 2 189 -6 2 1768 364 317 50 0 chr1 155136807 155136926 -42058506 - ID_B1 SINE B4 -17 207 83 2 1768 1233 205 123 18 chr1 155136926 155137259 -42058173 + ORR1D1 LTR MaLR 1 368 -6 2 1768 352 268 0 12 chr1 155137270 155137353 -42058079 - ID SINE ID -142 82 1 2 1768 799 121 20 47 chr1 155137449 155137597 -42057835 + B1_Mur4 SINE Alu 6 149 -1 2 1768 228 57 0 86 chr1 155137597 155137655 -42057777 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 2 1768 332 243 168 18 chr1 155137825 155137938 -42057494 - B1_Mm SINE Alu -17 130 1 2 1768 410 95 312 37 chr1 155137963 155138072 -42057360 - B1_Mur3 SINE Alu 0 149 11 2 1768 202 277 0 19 chr1 155138520 155138623 -42056809 + (TAA)n Simple_repeat Simple_repeat 2 102 0 2 1768 349 269 56 0 chr1 155139024 155139132 -42056300 + B3A SINE B2 2 115 -83 2 1768 209 30 61 0 chr1 155139343 155139376 -42056056 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 2 1768 425 236 62 35 chr1 155139417 155139562 -42055870 + MER46C DNA MER2_type 79 227 -111 2 1768 432 0 0 0 chr1 155139961 155140009 -42055423 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1768 288 267 207 0 chr1 155140408 155140524 -42054908 + ID_B1 SINE B4 82 221 -3 2 1768 329 219 0 0 chr1 155140602 155140675 -42054757 - B3 SINE B2 -138 78 6 2 1768 287 304 95 45 chr1 155141558 155141758 -42053674 + MLT2C2 LTR ERVL 23 232 -232 2 1768 268 275 172 49 chr1 155142113 155142316 -42053116 + MLT2C2 LTR ERVL 229 456 -8 2 1768 640 256 14 32 chr1 155143730 155143908 -42051524 + B3A SINE B2 1 174 -42 2 1768 444 37 0 0 chr1 155143908 155143962 -42051470 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1768 441 296 31 87 chr1 155143962 155143979 -42051453 + B2_Mm2 SINE B2 169 184 -11 2 1768 745 268 27 40 chr1 155144085 155144381 -42051051 + B4A SINE B4 1 292 0 2 1768 346 231 76 15 chr1 155144522 155144654 -42050778 - B2_Mm2 SINE B2 -9 186 47 2 1768 1048 147 22 38 chr1 155144702 155144886 -42050546 - B2_Mm2 SINE B2 -13 182 2 2 1768 1349 86 16 31 chr1 155145415 155145608 -42049824 - B2_Mm2 SINE B2 -1 194 5 2 1768 778 153 267 12 chr1 155145624 155145796 -42049636 - B3 SINE B2 0 216 1 2 1768 234 105 0 0 chr1 155146042 155146080 -42049352 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1768 207 0 0 0 chr1 155146161 155146184 -42049248 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1768 725 93 0 0 chr1 155146184 155146291 -42049141 - B2_Mm2 SINE B2 -88 107 1 3 1768 951 52 2 0 chr1 155147038 155147176 -42048256 + B1_Mm SINE Alu 10 147 0 3 1768 652 289 44 0 chr1 155147210 155147390 -42048042 - B3A SINE B2 -10 188 1 3 1768 428 317 23 80 chr1 155148581 155148756 -42046676 + RSINE1 SINE B4 1 165 0 3 1768 431 212 8 74 chr1 155148763 155148885 -42046547 + B1_Mur4 SINE Alu 20 133 -17 3 1768 549 110 0 0 chr1 155148885 155148967 -42046465 + (TGGA)n Simple_repeat Simple_repeat 3 84 0 3 1768 357 86 0 0 chr1 155148967 155149025 -42046407 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1768 210 57 171 0 chr1 155149030 155149065 -42046367 + B1_Mm SINE Alu 95 135 -12 3 1768 471 176 0 0 chr1 155149071 155149162 -42046270 + GA-rich Low_complexity Low_complexity 2 92 0 3 1768 284 119 0 0 chr1 155149167 155149209 -42046223 + B1_Mus2 SINE Alu 93 134 -13 3 1768 1503 41 10 0 chr1 155149209 155149504 -42045928 + (TAGA)n Simple_repeat Simple_repeat 1 298 0 3 1768 1239 186 9 5 chr1 155150325 155150536 -42044896 + B3 SINE B2 1 212 -4 3 1768 1238 54 0 0 chr1 155151018 155151165 -42044267 + B1_Mus2 SINE Alu 1 147 0 3 1768 249 207 0 0 chr1 155151165 155151223 -42044209 + A-rich Low_complexity Low_complexity 1 58 0 3 1768 299 351 58 13 chr1 155151371 155151527 -42043905 + RSINE1 SINE B4 1 163 -2 3 1768 705 216 15 0 chr1 155151548 155151682 -42043750 + B1_Mur2 SINE Alu 2 137 -12 3 1768 477 0 0 0 chr1 155151682 155151735 -42043697 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 3 1768 186 103 0 0 chr1 155153821 155153850 -42041582 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1768 679 103 0 9 chr1 155153948 155154056 -42041376 + B2_Mm2 SINE B2 1 107 -88 3 1768 581 104 94 0 chr1 155154323 155154419 -42041013 + B2_Mm2 SINE B2 1 105 -90 3 1768 246 299 168 0 chr1 155155782 155155889 -42039543 - MLT1H1 LTR MaLR -61 494 370 3 1768 297 0 0 0 chr1 155156339 155156372 -42039060 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1768 339 275 58 32 chr1 155156374 155156562 -42038870 - MER20B DNA MER1_type -440 343 151 3 1768 259 279 37 25 chr1 155156789 155156870 -42038562 - ID_B1 SINE B4 -60 164 83 3 1768 291 315 156 11 chr1 155156947 155157422 -42038010 + L1M5 LINE L1 4186 4729 -1417 3 1768 242 313 12 0 chr1 155157469 155157552 -42037880 + L1M5 LINE L1 5079 5162 -984 3 1768 1105 197 14 19 chr1 155157565 155157777 -42037655 + B3 SINE B2 2 212 -4 3 1768 255 349 101 12 chr1 155158071 155158239 -42037193 + L1M5 LINE L1 5533 5715 -525 3 1768 801 141 14 29 chr1 155158851 155158990 -42036442 + B1_Mur4 SINE Alu 4 140 -10 3 1768 510 17 0 0 chr1 155158992 155159051 -42036381 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1768 316 270 106 45 chr1 155159051 155159183 -42036249 + B1F2 SINE Alu 7 146 -3 3 1768 250 260 0 88 chr1 155159271 155159351 -42036081 - ID4_ SINE ID -6 77 5 3 1768 22 0 0 0 chr1 155160248 155160270 -42035162 + AT_rich Low_complexity Low_complexity 1 22 0 3 1768 297 182 14 43 chr1 155160500 155160569 -42034863 + ID_B1 SINE B4 96 162 -62 3 1768 1182 181 14 14 chr1 155160638 155160846 -42034586 - B3 SINE B2 -6 210 3 3 1768 766 302 68 15 chr1 155161535 155161874 -42033558 + Lx9 LINE L1 7136 7492 -152 3 1768 314 45 0 22 chr1 155161967 155162012 -42033420 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 3 1768 849 138 13 52 chr1 155162060 155162213 -42033219 - B1_Mus1 SINE Alu -1 147 1 3 1768 22 0 0 0 chr1 155162226 155162248 -42033184 + AT_rich Low_complexity Low_complexity 1 22 0 3 1768 182 262 41 143 chr1 155162978 155163076 -42032356 - L2b LINE L2 0 3375 3288 3 1768 1383 51 11 28 chr1 155163703 155163884 -42031548 + B2_Mm2 SINE B2 3 180 -15 3 1768 229 219 31 0 chr1 155164098 155164162 -42031270 - PB1D10 SINE Alu -1 116 51 3 1768 213 39 0 0 chr1 155164378 155164404 -42031028 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1768 833 185 14 7 chr1 155165756 155165903 -42029529 + B1_Mur1 SINE Alu 1 148 -1 3 1768 639 284 0 6 chr1 155165915 155166080 -42029352 + B3A SINE B2 1 158 -58 3 1768 508 301 15 22 chr1 155166261 155166397 -42029035 - RSINE1 SINE B4 -29 136 2 3 1768 394 210 134 24 chr1 155166649 155166776 -42028656 - MLT1A1 LTR MaLR 0 408 268 3 1768 264 59 0 0 chr1 155167751 155167785 -42027647 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 3 1768 535 265 0 57 chr1 155169898 155170038 -42025394 + B1F SINE Alu 18 149 0 3 1768 300 237 26 9 chr1 155170045 155170160 -42025272 + GA-rich Low_complexity Low_complexity 4 120 0 3 1768 1110 44 74 12 chr1 155171259 155171421 -42024011 + B2_Mm2 SINE B2 1 172 -23 3 1768 452 159 45 0 chr1 155171432 155171531 -42023901 + B1F SINE Alu 1 141 -8 3 1768 1342 85 23 0 chr1 155171902 155172078 -42023354 + B2_Mm2 SINE B2 2 181 -14 3 1768 343 97 285 26 chr1 155172124 155172239 -42023193 + B2_Mm2 SINE B2 46 195 0 3 1768 684 282 70 70 chr1 155172284 155172597 -42022835 - MER58B DNA MER1_type -26 315 3 3 1768 419 289 25 0 chr1 155172765 155172886 -42022546 + PB1 SINE Alu 3 126 -1 3 1768 1324 94 21 10 chr1 155173775 155173968 -42021464 + B2_Mm2 SINE B2 1 195 0 3 1768 1207 92 11 11 chr1 155174231 155174407 -42021025 - B2_Mm2 SINE B2 -19 176 1 3 1768 645 56 0 0 chr1 155175382 155175472 -42019960 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1768 324 102 0 0 chr1 155176379 155176428 -42019004 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3 1768 477 171 18 3 chr1 155176479 155176585 -42018847 - B1_Mur1 SINE Alu -8 141 33 3 1768 522 233 61 23 chr1 155177209 155177341 -42018091 + B1_Mur2 SINE Alu 2 138 -11 3 1768 495 0 0 0 chr1 155178176 155178231 -42017201 + (TATAA)n Simple_repeat Simple_repeat 2 56 0 3 1768 24 67 0 0 chr1 155179620 155179665 -42015767 + GC_rich Low_complexity Low_complexity 1 45 0 3 1768 22 0 0 0 chr1 155180052 155180074 -42015358 + GC_rich Low_complexity Low_complexity 1 22 0 3 1768 439 181 0 0 chr1 155181242 155181314 -42014118 + RSINE1 SINE B4 10 81 -84 3 1768 259 253 69 59 chr1 155181244 155181345 -42014087 + B2_Mm1t SINE B2 11 112 -81 3 1768 546 16 0 0 chr1 155181358 155181421 -42014011 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1768 1089 202 18 9 chr1 155181747 155181967 -42013465 + URR1B DNA MER1_type 1 222 -3 3 1768 411 238 20 10 chr1 155182341 155182443 -42012989 - PB1D7 SINE Alu -11 109 7 3 1768 1119 93 31 0 chr1 155182617 155182779 -42012653 + B2_Mm2 SINE B2 2 168 -27 3 1768 871 50 0 0 chr1 155182777 155182898 -42012534 + B1_Mus2 SINE Alu 27 147 0 3 1768 199 79 26 26 chr1 155183087 155183126 -42012306 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 3 1768 587 81 12 0 chr1 155183159 155183245 -42012187 + (TCC)n Simple_repeat Simple_repeat 3 89 0 3 1768 24 32 0 0 chr1 155184636 155184667 -42010765 + AT_rich Low_complexity Low_complexity 1 31 0 3 1768 296 329 29 80 chr1 155184715 155184738 -42010694 + B4A SINE B4 63 224 -64 3 1768 505 257 61 54 chr1 155184738 155184886 -42010546 + B1F1 SINE Alu 1 149 0 3 1768 551 280 0 8 chr1 155184886 155185005 -42010427 + ID_B1 SINE B4 87 204 -20 3 1768 299 287 92 9 chr1 155185027 155185136 -42010296 + RSINE1 SINE B4 3 120 -45 3 1768 504 48 0 0 chr1 155185140 155185203 -42010229 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1768 180 0 0 0 chr1 155185390 155185410 -42010022 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1768 1105 101 0 0 chr1 155185413 155185571 -42009861 - B2_Mm2 SINE B2 -37 158 1 3 1768 484 272 0 0 chr1 155185582 155185696 -42009736 - B1_Mur1 SINE Alu -3 146 33 3 1768 3795 286 69 41 chr1 155185700 155186058 -42009374 - L1_Mur3 LINE L1 -525 5355 4983 3 1768 1165 62 0 0 chr1 155186058 155186204 -42009228 + B1_Mm SINE Alu 2 147 0 3 1768 3795 286 69 41 chr1 155186204 155187226 -42008206 - L1_Mur3 LINE L1 -898 4982 3928 3 1768 577 268 19 63 chr1 155187226 155187433 -42007999 - B3A SINE B2 0 198 1 3 1768 3795 286 69 41 chr1 155187433 155187808 -42007624 - L1_Mur3 LINE L1 -1953 3927 3550 3 1768 876 148 48 21 chr1 155187915 155188060 -42007372 + B1_Mur4 SINE Alu 2 150 0 3 1768 333 337 5 75 chr1 155188080 155188266 -42007166 - L1M5 LINE L1 -3145 3001 2829 3 27 14349 76 32 19 chr1 155188810 155192034 -42003398 - L1VL4 LINE L1 -57 3857 538 3 1769 245 287 138 14 chr1 155192228 155192366 -42003066 - MIR SINE MIR -70 192 38 3 1769 658 287 60 50 chr1 155193282 155193601 -42001831 + Lx8 LINE L1 7147 7468 -5 3 1769 330 301 88 0 chr1 155193627 155193740 -42001692 + RSINE1 SINE B4 2 124 -41 3 1769 227 222 37 0 chr1 155194167 155194221 -42001211 + MLT1A LTR MaLR 315 370 -4 3 1769 204 133 0 62 chr1 155194238 155194286 -42001146 + A-rich Low_complexity Low_complexity 2 46 0 3 1769 2101 182 89 18 chr1 155194654 155195146 -42000286 - RLTR11A2 LTR ERVK 0 527 1 3 1769 731 172 30 0 chr1 155195789 155195923 -41999509 + B1F SINE Alu 11 148 -1 3 1769 244 245 0 3 chr1 155196094 155196155 -41999277 + PB1 SINE Alu 10 69 -48 3 1769 2892 137 48 32 chr1 155196225 155196784 -41998648 + RMER15 LTR ERVL 8 575 0 3 1769 892 274 56 0 chr1 155196784 155197016 -41998416 + B4A SINE B4 47 292 0 3 1769 251 240 0 9 chr1 155197016 155197121 -41998311 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1769 451 217 0 37 chr1 155197137 155197324 -41998108 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1769 574 228 68 14 chr1 155197330 155197477 -41997955 + RSINE1 SINE B4 11 165 0 3 1769 241 252 22 0 chr1 155197512 155197581 -41997851 + ID4_ SINE ID 7 83 0 4 1769 1137 157 75 10 chr1 155197597 155197797 -41997635 - B3 SINE B2 0 216 4 4 1769 296 250 0 0 chr1 155198449 155198509 -41996923 + PB1D10 SINE Alu 27 86 -31 4 1769 1229 257 58 12 chr1 155198525 155198852 -41996580 - ORR1D2 LTR MaLR -3 367 26 4 1769 2326 133 57 3 chr1 155198853 155199236 -41996196 - MTC LTR MaLR 0 421 18 4 1769 400 200 147 0 chr1 155199540 155199635 -41995797 + B1F SINE Alu 34 142 -7 4 1769 459 186 167 0 chr1 155199653 155199755 -41995677 + B1_Mur2 SINE Alu 21 139 -10 4 1769 186 0 88 0 chr1 155199755 155199789 -41995643 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 1769 842 267 20 5 chr1 155199873 155200076 -41995356 + ID_B1 SINE B4 19 224 0 4 1769 902 175 0 6 chr1 155200076 155200254 -41995178 + GA-rich Low_complexity Low_complexity 3 179 0 4 1769 287 167 0 0 chr1 155200463 155200511 -41994921 + RMER15 LTR ERVL 403 450 -125 4 1769 483 267 0 8 chr1 155200699 155200816 -41994616 + PB1D9 SINE Alu 4 119 -1 4 1769 22 0 0 0 chr1 155201616 155201638 -41993794 + AT_rich Low_complexity Low_complexity 1 22 0 4 1769 230 291 56 34 chr1 155201724 155201813 -41993619 + MIRb SINE MIR 83 173 -95 4 1769 180 387 0 0 chr1 155201973 155202048 -41993384 - L2c LINE L2 -47 3340 3266 4 1769 226 185 91 15 chr1 155202391 155202457 -41992975 + MIR SINE MIR 74 144 -118 4 1769 262 290 95 48 chr1 155202711 155202816 -41992616 + B3A SINE B2 85 194 -4 4 1769 236 209 11 0 chr1 155202976 155203067 -41992365 + (TCTG)n Simple_repeat Simple_repeat 1 92 0 4 1769 256 340 53 46 chr1 155204127 155204278 -41991154 + ERVL-E-int LTR ERVL 3767 3918 -1749 4 1769 398 287 213 0 chr1 155204281 155204417 -41991015 + RSINE1 SINE B4 1 165 0 4 1769 398 248 76 53 chr1 155204767 155204899 -41990533 + ID_B1 SINE B4 83 217 -7 4 1769 1227 103 29 0 chr1 155204908 155205082 -41990350 + B2_Mm2 SINE B2 3 181 -14 4 1769 293 109 310 11 chr1 155205138 155205254 -41990178 + B2_Mm2 SINE B2 46 195 0 4 1769 391 335 84 81 chr1 155205282 155205604 -41989828 - MLT1J LTR MaLR -96 416 94 4 1769 728 210 21 7 chr1 155206361 155206505 -41988927 + B1F SINE Alu 3 148 -1 4 1769 22 56 0 0 chr1 155206655 155206691 -41988741 + AT_rich Low_complexity Low_complexity 1 36 0 4 1769 503 289 72 0 chr1 155206743 155206895 -41988537 + RSINE1 SINE B4 1 163 -2 4 1769 278 207 121 0 chr1 155207042 155207100 -41988332 + B3A SINE B2 2 66 -132 4 1769 691 174 90 8 chr1 155207101 155207234 -41988198 - B1_Mur4 SINE Alu -6 144 1 4 1769 291 114 0 0 chr1 155207244 155207288 -41988144 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 4 1769 840 240 29 0 chr1 155207289 155207464 -41987968 + B3A SINE B2 1 180 -18 4 1769 808 128 105 0 chr1 155207495 155207628 -41987804 + B1_Mus1 SINE Alu 2 148 0 4 1769 418 270 74 19 chr1 155207692 155207854 -41987578 - Lx8 LINE L1 -2 7471 7301 4 1769 1390 257 63 80 chr1 155207852 155208342 -41987090 - Lx8 LINE L1 -326 7147 6666 4 1769 1684 160 117 12 chr1 155208340 155208681 -41986751 + Lx6 LINE L1 5611 5987 -1473 4 1769 1907 158 34 108 chr1 155208681 155209031 -41986401 + MT2B LTR ERVL 1 461 -140 4 1769 1090 43 58 0 chr1 155209031 155209169 -41986263 - B1_Mus2 SINE Alu 0 147 2 4 1769 1907 111 21 110 chr1 155209169 155209314 -41986118 + MT2B LTR ERVL 462 601 0 4 1769 2778 249 44 63 chr1 155209314 155210419 -41985013 + Lx5 LINE L1 5988 7052 -6 4 1769 949 301 156 31 chr1 155210749 155211674 -41983758 - L1_Rod LINE L1 -3565 2282 1243 4 1769 447 52 0 0 chr1 155212276 155212334 -41983098 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1769 198 71 0 0 chr1 155212368 155212396 -41983036 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1769 387 330 0 0 chr1 155212416 155212519 -41982913 - RSINE1 SINE B4 -16 149 47 4 1769 1081 103 0 0 chr1 155212643 155212789 -41982643 + B1_Mus1 SINE Alu 3 148 0 4 1769 297 128 0 0 chr1 155212789 155212836 -41982596 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1769 23 33 0 0 chr1 155213068 155213098 -41982334 + AT_rich Low_complexity Low_complexity 1 30 0 4 1769 751 277 9 24 chr1 155213321 155213532 -41981900 - ID_B1 SINE B4 -8 216 9 4 1769 234 352 22 33 chr1 155213637 155213728 -41981704 - PB1D10 SINE Alu -9 108 19 4 1769 369 0 0 0 chr1 155213741 155213782 -41981650 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 1769 512 255 0 160 chr1 155213782 155213969 -41981463 - RSINE1 SINE B4 -6 159 3 4 1769 394 184 100 20 chr1 155214158 155214258 -41981174 - PB1 SINE Alu -3 124 17 4 1769 506 282 38 0 chr1 155214651 155214782 -41980650 - RSINE1 SINE B4 -26 139 4 4 1769 397 312 0 23 chr1 155214818 155214946 -41980486 - B1F SINE Alu 0 149 25 4 1769 607 175 18 0 chr1 155214974 155215088 -41980344 + B3 SINE B2 2 117 -99 4 1769 21 0 0 0 chr1 155215359 155215380 -41980052 + AT_rich Low_complexity Low_complexity 1 21 0 4 1769 624 224 27 40 chr1 155215559 155215708 -41979724 - B1_Mur2 SINE Alu 0 149 3 4 1769 229 281 74 142 chr1 155215565 155215714 -41979718 - B4A SINE B4 -71 221 82 4 1769 198 71 0 0 chr1 155215714 155215742 -41979690 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 1769 229 281 74 142 chr1 155215742 155215754 -41979678 - B4A SINE B4 -211 81 71 4 1769 197 86 57 0 chr1 155215768 155215803 -41979629 + (TTTCC)n Simple_repeat Simple_repeat 4 40 0 4 1769 195 204 0 0 chr1 155216002 155216046 -41979386 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1769 471 278 204 4 chr1 155216124 155216355 -41979077 - B4A SINE B4 -14 278 2 4 1769 604 286 46 0 chr1 155216358 155216533 -41978899 - L1MC4 LINE L1 -1115 6927 6745 4 1769 652 200 6 6 chr1 155216572 155216733 -41978699 + (TCTA)n Simple_repeat Simple_repeat 4 164 0 4 1769 186 388 24 16 chr1 155216905 155217028 -41978404 - L2 LINE L2 -394 3025 2902 4 1769 450 0 0 0 chr1 155217215 155217265 -41978167 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1769 404 283 0 0 chr1 155217270 155217369 -41978063 - B4 SINE B4 -18 274 176 4 1769 291 54 0 0 chr1 155217464 155217501 -41977931 + (TCC)n Simple_repeat Simple_repeat 3 39 0 4 1769 283 194 5 0 chr1 155217672 155217727 -41977705 - B1F1 SINE Alu -86 63 7 4 1769 35 54 0 0 chr1 155217784 155217840 -41977592 + AT_rich Low_complexity Low_complexity 1 56 0 4 1769 1278 34 0 0 chr1 155217840 155217987 -41977445 + B1_Mm SINE Alu 1 147 0 4 1769 183 100 0 0 chr1 155217987 155218017 -41977415 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1769 223 272 40 81 chr1 155218400 155218548 -41976884 + ID_B1 SINE B4 2 143 -81 4 1769 549 277 13 7 chr1 155218559 155218708 -41976724 + ID_B1 SINE B4 67 216 -8 4 1769 914 50 0 0 chr1 155218866 155218986 -41976446 + B1_Mus2 SINE Alu 20 139 -8 4 1769 232 48 0 45 chr1 155218986 155219030 -41976402 + (CAA)n Simple_repeat Simple_repeat 2 43 0 4 1769 318 356 35 65 chr1 155219119 155219350 -41976082 - LTR33A LTR ERVL -188 332 109 4 1769 354 305 29 0 chr1 155219395 155219500 -41975932 + PB1D7 SINE Alu 12 119 -1 4 1769 684 36 0 0 chr1 155219505 155219588 -41975844 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1769 253 47 47 0 chr1 155219680 155219723 -41975709 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 1769 539 260 0 31 chr1 155219734 155219861 -41975571 + B1_Mur2 SINE Alu 1 123 -26 4 1769 349 241 224 0 chr1 155220044 155220160 -41975272 + B1F SINE Alu 2 143 -6 4 1769 222 276 54 65 chr1 155220244 155220337 -41975095 + B1_Mur3 SINE Alu 1 92 -57 4 1769 267 214 0 35 chr1 155220447 155220505 -41974927 + PB1D9 SINE Alu 65 120 0 4 1769 23 0 0 0 chr1 155220832 155220855 -41974577 + AT_rich Low_complexity Low_complexity 1 23 0 4 1769 336 247 0 0 chr1 155221067 155221140 -41974292 - ID_B1 SINE B4 -6 218 146 4 1769 978 186 17 79 chr1 155221227 155221467 -41973965 - URR1A DNA MER1_type 0 226 2 4 1769 309 312 11 0 chr1 155221739 155221832 -41973600 - PB1 SINE Alu -8 119 26 4 1769 664 277 26 0 chr1 155221884 155222039 -41973393 - RSINE1 SINE B4 -2 163 5 4 1769 303 215 140 0 chr1 155222152 155222245 -41973187 + PB1D7 SINE Alu 14 119 -1 4 1769 198 0 0 0 chr1 155222798 155222820 -41972612 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1769 366 205 0 0 chr1 155222900 155222978 -41972454 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1769 1296 70 0 0 chr1 155223194 155223366 -41972066 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 4 1769 801 0 0 0 chr1 155223366 155223455 -41971977 + (GGGGA)n Simple_repeat Simple_repeat 4 92 0 4 1769 468 223 28 37 chr1 155224417 155224524 -41970908 - PB1D7 SINE Alu -5 115 10 4 1769 633 61 0 0 chr1 155224557 155224639 -41970793 + (TTTA)n Simple_repeat Simple_repeat 4 85 0 4 1769 736 283 45 60 chr1 155224642 155224841 -41970591 + ID_B1 SINE B4 2 197 -27 4 1769 398 248 83 104 chr1 155224742 155224886 -41970546 + B1F2 SINE Alu 9 149 0 4 1769 403 202 50 60 chr1 155225644 155225744 -41969688 - ID_B1 SINE B4 -20 204 106 4 1769 326 212 188 0 chr1 155225673 155225758 -41969674 - PB1D9 SINE Alu -19 101 1 4 1769 1379 67 39 0 chr1 155226273 155226452 -41968980 + B2_Mm2 SINE B2 2 187 -8 4 1769 749 297 26 26 chr1 155226513 155226741 -41968691 + B4A SINE B4 60 287 -5 4 1769 428 86 0 14 chr1 155226797 155226868 -41968564 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1769 329 248 52 26 chr1 155227059 155227175 -41968257 - PB1D7 SINE Alu 0 120 2 5 1769 400 323 37 8 chr1 155228158 155228292 -41967140 + B4A SINE B4 141 278 -14 5 1769 218 306 0 0 chr1 155228315 155228377 -41967055 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1769 518 197 28 141 chr1 155228390 155228504 -41966928 + L1MA4A LINE L1 5489 5601 -696 5 1769 1280 106 21 0 chr1 155228504 155228692 -41966740 + B2_Mm1a SINE B2 2 193 0 5 1769 518 200 29 142 chr1 155228692 155228775 -41966657 + L1MA4A LINE L1 5594 5663 -628 5 1769 239 220 51 0 chr1 155228764 155228823 -41966609 + L1MA4A LINE L1 5870 5931 -372 5 1769 624 158 0 22 chr1 155228953 155228982 -41966450 + polypyrimidine Low_complexity Low_complexity 111 137 0 5 1769 1350 67 0 0 chr1 155228982 155229160 -41966272 + (TTC)n Simple_repeat Simple_repeat 3 180 0 5 1769 624 158 0 22 chr1 155229160 155229266 -41966166 + CT-rich Low_complexity Low_complexity 5 110 0 5 1769 571 169 250 13 chr1 155229266 155229422 -41966010 + ORR1D2 LTR MaLR 158 350 -20 5 1769 729 0 0 0 chr1 155229422 155229503 -41965929 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1769 229 227 344 23 chr1 155229503 155229516 -41965916 + ORR1D2 LTR MaLR 309 320 -9 5 1769 3087 48 3 0 chr1 155229533 155229910 -41965522 + MTA_Mm LTR MaLR 19 396 0 5 1769 9586 16 8 0 chr1 155229910 155230999 -41964433 + MTA_Mm-int LTR MaLR 1 1098 0 5 1769 3155 39 39 3 chr1 155230999 155231381 -41964051 + MTA_Mm LTR MaLR 1 396 0 5 1769 1492 73 16 16 chr1 155231418 155231612 -41963820 - B2_Mm2 SINE B2 -1 194 1 5 1769 234 0 0 0 chr1 155231633 155231659 -41963773 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1769 995 93 36 0 chr1 155231659 155231798 -41963634 - B1_Mus1 SINE Alu 0 148 5 5 1769 397 324 60 6 chr1 155232011 155232194 -41963238 - MIR SINE MIR -29 233 41 5 1769 576 245 31 127 chr1 155232709 155232773 -41962659 - B3 SINE B2 -6 210 164 5 1769 1218 54 0 0 chr1 155232773 155232920 -41962512 - B1_Mus1 SINE Alu 0 148 2 5 1769 629 204 41 42 chr1 155232920 155233084 -41962348 - B3A SINE B2 -53 163 4 5 1769 358 327 0 0 chr1 155233204 155233305 -41962127 + PB1D10 SINE Alu 8 108 -9 5 1769 216 0 0 0 chr1 155233309 155233333 -41962099 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1769 241 235 0 0 chr1 155233556 155233607 -41961825 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1769 762 224 99 5 chr1 155234421 155234623 -41960809 + ID_B1 SINE B4 2 222 -2 5 1769 1112 96 19 19 chr1 155234659 155234818 -41960614 + B2_Mm1t SINE B2 1 159 -34 5 1769 3403 30 5 5 chr1 155234820 155235216 -41960216 - MTA_Mm LTR MaLR 0 396 1 5 1769 454 16 0 16 chr1 155235216 155235278 -41960154 - MTA_Mm-int LTR MaLR 0 1098 1038 5 1769 6931 25 7 5 chr1 155235278 155236091 -41959341 - L1Md_F3 LINE L1 0 6584 5770 5 1769 483 91 13 0 chr1 155236091 155236168 -41959264 + L1Md_F2 LINE L1 6503 6580 -2 5 1769 37772 65 6 7 chr1 155236221 155242010 -41953422 - L1Md_F3 LINE L1 -101 5782 2 5 1769 984 43 0 0 chr1 155242019 155242160 -41953272 - MTA_Mm-int LTR MaLR -46 1052 912 5 1769 1288 115 10 16 chr1 155242193 155242351 -41953081 + B2_Mm2 SINE B2 1 158 -37 5 1769 3138 63 5 5 chr1 155242351 155242747 -41952685 - MTA_Mm LTR MaLR 0 396 1 5 1769 1288 115 10 16 chr1 155242747 155242782 -41952650 + B2_Mm2 SINE B2 159 193 -2 5 1769 191 217 64 21 chr1 155242928 155242975 -41952457 + L2a LINE L2 3111 3159 -267 5 1769 738 134 28 63 chr1 155243079 155243222 -41952210 + B1_Mus2 SINE Alu 1 138 -9 5 1769 318 26 0 0 chr1 155243222 155243261 -41952171 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 5 1769 203 105 53 0 chr1 155243375 155243413 -41952019 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1769 345 289 0 12 chr1 155243426 155243510 -41951922 - B4 SINE B4 -208 84 2 5 1769 332 172 116 25 chr1 155243810 155243908 -41951524 + PB1D10 SINE Alu 10 115 -34 5 1769 1135 227 78 35 chr1 155244670 155245040 -41950392 + RMER15-int LTR ERVL 732 1117 -3882 5 1769 331 340 97 88 chr1 155245051 155245473 -41949959 + RMER15-int LTR ERVL 1626 2051 -2948 5 1769 3042 224 85 37 chr1 155245750 155246605 -41948827 + RMER19B LTR ERVK 1 896 -6 5 1769 918 277 25 39 chr1 155246618 155246716 -41948716 + RMER15-int LTR ERVL 4147 4238 -761 5 1769 2342 164 35 7 chr1 155246716 155247122 -41948310 + MTC LTR MaLR 5 421 0 5 1769 918 277 25 39 chr1 155247122 155247308 -41948124 + RMER15-int LTR ERVL 4239 4427 -572 5 1769 370 197 8 14 chr1 155247374 155247453 -41947979 - PB1D9 SINE Alu -17 132 42 5 1769 417 208 26 0 chr1 155247657 155247734 -41947698 - PB1D9 SINE Alu -17 103 25 5 1769 1073 77 0 20 chr1 155247782 155247928 -41947504 - B1_Mus1 SINE Alu -1 147 5 5 1769 541 209 45 30 chr1 155247932 155248065 -41947367 - B3A SINE B2 -60 138 4 5 1769 333 307 0 34 chr1 155248181 155248299 -41947133 + PB1D10 SINE Alu 4 117 0 5 1769 212 244 0 11 chr1 155248496 155248587 -41946845 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1769 1649 41 0 10 chr1 155249337 155249532 -41945900 + B2_Mm1a SINE B2 1 193 0 5 1769 782 214 98 15 chr1 155249696 155249900 -41945532 + ID_B1 SINE B4 2 222 -2 5 1769 1421 58 5 31 chr1 155249938 155250098 -41945334 + B2_Mm1t SINE B2 1 159 -34 5 1769 3338 38 2 8 chr1 155250098 155250496 -41944936 - MTA_Mm LTR MaLR 0 396 1 5 1769 1421 58 5 31 chr1 155250496 155250531 -41944901 + B2_Mm1t SINE B2 160 191 -2 5 1769 788 119 28 63 chr1 155250824 155250967 -41944465 + B1_Mm SINE Alu 1 138 -9 5 1769 213 39 0 0 chr1 155250967 155250993 -41944439 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1769 295 274 58 19 chr1 155251004 155251108 -41944324 + Lx8 LINE L1 6777 6884 -589 5 1769 1108 80 0 0 chr1 155251130 155251267 -41944165 + B1_Mus1 SINE Alu 2 138 -10 5 1769 473 238 64 24 chr1 155251415 155251540 -41943892 + Lx8 LINE L1 6904 7033 -440 5 1769 811 153 158 4 chr1 155251747 155251919 -41943513 + MTD LTR MaLR 223 411 -8 5 1769 310 259 13 25 chr1 155252001 155252086 -41943346 - RSINE1 SINE B4 -204 88 4 5 1769 2001 105 11 22 chr1 155252143 155252522 -41942910 - RLTR10A LTR ERVK -16 343 1 5 1769 4635 112 38 16 chr1 155252522 155253260 -41942172 - RLTR10-int LTR ERVK -1 1986 1288 5 1769 2961 106 90 68 chr1 155253260 155253792 -41941640 - RLTR10-int LTR ERVK -1015 5527 5004 5 1769 190 301 106 53 chr1 155253884 155254035 -41941397 - L3 LINE CR1 -828 3661 3503 5 1769 2431 68 62 0 chr1 155254184 155254505 -41940927 - RLTR10-int LTR ERVK -995 992 652 5 1769 270 111 0 43 chr1 155254508 155254555 -41940877 - RLTR10-int LTR ERVK -6405 137 93 5 1769 341 355 0 27 chr1 155254555 155254665 -41940767 + C-rich Low_complexity Low_complexity 39 145 0 5 1769 410 0 0 0 chr1 155254725 155254769 -41940663 - MMERVK10C-int LTR ERVK -7314 267 224 5 1769 2039 125 6 37 chr1 155254807 155255202 -41940230 - RLTR10A LTR ERVK 0 359 1 5 1769 316 188 115 23 chr1 155255453 155255540 -41939892 + PB1D10 SINE Alu 10 104 -13 5 1769 930 134 0 0 chr1 155255830 155255964 -41939468 + B1_Mm SINE Alu 8 141 -6 5 1769 1004 263 68 24 chr1 155256438 155256819 -41938613 + RMER15-int LTR ERVL 732 1129 -3870 5 1769 545 340 97 67 chr1 155256820 155257344 -41938088 + RMER15-int LTR ERVL 1626 2165 -2834 5 1769 478 218 0 0 chr1 155257514 155257601 -41937831 + RMER19B LTR ERVK 1 87 -815 5 1769 213 39 0 0 chr1 155257723 155257749 -41937683 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1769 954 144 7 0 chr1 155257750 155257896 -41937536 - B1_Mm SINE Alu 0 147 1 5 1769 1259 41 0 0 chr1 155258476 155258623 -41936809 - B1_Mus2 SINE Alu 0 147 1 5 1769 600 219 76 95 chr1 155258627 155258785 -41936647 - B3A SINE B2 -5 190 36 5 1769 682 276 75 27 chr1 155258828 155259014 -41936418 + B3 SINE B2 1 195 -21 5 1769 1390 80 5 11 chr1 155259071 155259261 -41936171 + B2_Mm1t SINE B2 2 190 -3 5 1769 758 268 27 40 chr1 155259353 155259649 -41935783 + B4A SINE B4 1 292 0 5 1769 352 255 27 34 chr1 155259788 155259934 -41935498 - B2_Mm2 SINE B2 0 195 51 5 1769 1057 141 22 38 chr1 155259965 155260149 -41935283 - B2_Mm2 SINE B2 -13 182 2 5 1769 1145 126 15 30 chr1 155260684 155260881 -41934551 - B2_Mm2 SINE B2 -1 194 1 5 1769 2186 113 0 16 chr1 155261262 155261576 -41933856 - RLTR27 LTR ERVK 0 309 1 5 1769 213 39 0 0 chr1 155262058 155262084 -41933348 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1769 680 211 16 0 chr1 155262091 155262219 -41933213 - B1_Mur2 SINE Alu -18 131 2 5 1769 335 366 58 13 chr1 155262240 155262395 -41933037 - RSINE1 SINE B4 -2 163 2 5 1769 1111 80 0 0 chr1 155262582 155262720 -41932712 - B1_Mm SINE Alu -9 138 1 5 1769 207 0 0 0 chr1 155262858 155262881 -41932551 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1769 600 219 76 95 chr1 155263298 155263456 -41931976 - B3A SINE B2 -5 190 36 5 1769 636 227 15 36 chr1 155263499 155263636 -41931796 + B3A SINE B2 1 134 -64 5 1769 540 0 0 0 chr1 155263657 155263717 -41931715 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1769 1404 74 5 21 chr1 155263743 155263935 -41931497 + B2_Mm1t SINE B2 2 190 -3 5 1769 758 268 27 40 chr1 155264027 155264323 -41931109 + B4A SINE B4 1 292 0 5 1769 355 269 27 27 chr1 155264456 155264605 -41930827 - B2_Mm2 SINE B2 0 195 47 5 1769 1057 141 22 38 chr1 155264653 155264837 -41930595 - B2_Mm2 SINE B2 -13 182 2 5 1769 1076 138 15 31 chr1 155265368 155265563 -41929869 - B2_Mm2 SINE B2 -3 192 1 5 1769 207 0 0 0 chr1 155265649 155265672 -41929760 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1769 678 111 0 0 chr1 155265684 155265783 -41929649 - B1_Mm SINE Alu -1 146 48 5 1769 254 284 60 24 chr1 155265726 155265737 -41929695 - RLTR25B LTR ERVK -519 509 470 5 1769 257 155 0 65 chr1 155265737 155265799 -41929633 - 4.5SRNA scRNA scRNA -4 90 33 5 1769 581 234 77 96 chr1 155266034 155266191 -41929241 - B3A SINE B2 -6 189 36 5 1769 393 234 13 0 chr1 155266235 155266312 -41929120 + B3A SINE B2 1 78 -120 5 1769 1073 269 63 23 chr1 155266870 155267269 -41928163 + RMER15-int LTR ERVL 732 1146 -3853 5 1769 557 356 109 33 chr1 155267409 155267830 -41927602 + RMER15-int LTR ERVL 1772 2224 -2775 5 1769 2793 232 95 48 chr1 155267954 155268815 -41926617 + RMER19B LTR ERVK 1 902 0 5 1769 1507 264 60 36 chr1 155268823 155268921 -41926511 + RMER15-int LTR ERVL 4147 4237 -762 5 1769 2344 166 35 7 chr1 155268921 155269327 -41926105 + MTC LTR MaLR 5 421 0 5 1769 1507 264 60 36 chr1 155269327 155269676 -41925756 + RMER15-int LTR ERVL 4238 4605 -394 5 1769 417 182 45 0 chr1 155269689 155269777 -41925655 - Lx8 LINE L1 -406 7067 6976 5 1769 339 162 297 0 chr1 155269824 155269898 -41925534 - PB1D9 SINE Alu -17 130 35 5 1769 452 176 22 56 chr1 155270088 155270178 -41925254 - PB1D9 SINE Alu -9 111 25 5 1769 258 32 0 0 chr1 155270202 155270233 -41925199 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1769 1049 90 0 14 chr1 155270247 155270394 -41925038 - B1_Mm SINE Alu -1 146 2 5 1769 958 170 111 20 chr1 155270493 155270691 -41924741 - B3 SINE B2 0 216 1 5 1769 182 305 105 47 chr1 155270769 155270855 -41924577 + MIRm SINE MIR 176 266 -10 6 1769 261 0 0 0 chr1 155271136 155271165 -41924267 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1769 594 0 0 0 chr1 155271713 155271779 -41923653 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1769 556 200 52 0 chr1 155271999 155272114 -41923318 + ID_B1 SINE B4 93 213 -11 6 1769 202 268 14 27 chr1 155272205 155272278 -41923154 + C-rich Low_complexity Low_complexity 6 77 0 6 1769 642 317 0 11 chr1 155273137 155273325 -41922107 + B3 SINE B2 4 189 -27 6 1769 523 124 17 118 chr1 155273389 155273410 -41922022 + MT2B LTR ERVL 151 159 -442 6 1769 1018 84 14 7 chr1 155273410 155273554 -41921878 + B1_Mus2 SINE Alu 3 147 0 6 1769 264 183 82 16 chr1 155273722 155273783 -41921649 - B1_Mur4 SINE Alu -56 94 30 6 1769 316 258 0 110 chr1 155273767 155273867 -41921565 + PB1D10 SINE Alu 28 116 -1 6 1769 585 212 0 17 chr1 155273985 155274105 -41921327 + PB1D7 SINE Alu 1 118 -2 6 1769 348 127 0 0 chr1 155274324 155274379 -41921053 + (TCC)n Simple_repeat Simple_repeat 1 55 0 6 1769 245 308 75 122 chr1 155274379 155274401 -41921031 - B4 SINE B4 -46 246 165 6 1769 482 246 59 15 chr1 155274401 155274537 -41920895 - B1F1 SINE Alu 0 149 8 6 1769 245 308 75 122 chr1 155274537 155274558 -41920874 - B4 SINE B4 -46 164 77 6 1769 295 266 92 53 chr1 155274885 155274899 -41920533 - B1F SINE Alu 0 149 14 6 1769 297 316 51 0 chr1 155274899 155275016 -41920416 - ID_B1 SINE B4 -7 217 95 6 1769 330 264 50 144 chr1 155275360 155275541 -41919891 - RSINE1 SINE B4 0 165 2 6 1769 236 250 12 50 chr1 155276115 155276184 -41919248 + B1_Mus2 SINE Alu 66 136 -13 6 1769 225 0 0 0 chr1 155276184 155276209 -41919223 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 6 1769 524 293 18 91 chr1 155276561 155276726 -41918706 - RSINE1 SINE B4 0 165 13 6 1769 5601 86 30 16 chr1 155276781 155277576 -41917856 - RLTR13D1 LTR ERVK 0 806 1 6 1769 1223 61 0 0 chr1 155277692 155277840 -41917592 - B1_Mus1 SINE Alu 0 148 1 6 1769 294 106 0 0 chr1 155277963 155278010 -41917422 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1769 480 93 0 0 chr1 155278010 155278085 -41917347 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1769 272 236 18 0 chr1 155278102 155278157 -41917275 - ID4 SINE ID -26 57 2 6 1769 329 307 62 64 chr1 155278409 155278640 -41916792 - MLT1E2 LTR MaLR -278 227 1 6 1769 378 231 127 97 chr1 155278672 155278806 -41916626 + B3A SINE B2 30 167 -31 6 1769 900 276 114 12 chr1 155278843 155279177 -41916255 + ORR1D2 LTR MaLR 2 369 -1 6 1769 582 24 24 0 chr1 155279194 155279278 -41916154 - L1Md_F3 LINE L1 0 6584 6499 6 1769 355 303 18 35 chr1 155279326 155279439 -41915993 + RSINE1 SINE B4 4 114 -51 6 1769 2140 175 55 3 chr1 155279521 155279904 -41915528 - MTC LTR MaLR -18 403 1 6 1769 785 190 0 7 chr1 155279956 155280099 -41915333 + B1_Mus1 SINE Alu 1 142 -6 6 1769 22 56 0 0 chr1 155280108 155280144 -41915288 + AT_rich Low_complexity Low_complexity 1 36 0 6 1769 776 215 28 0 chr1 155280750 155280894 -41914538 + B1_Mur1 SINE Alu 1 148 -1 6 1769 487 308 26 15 chr1 155280916 155281074 -41914358 + ID_B1 SINE B4 69 222 -2 6 1769 570 266 166 22 chr1 155281122 155281459 -41913973 - MTD LTR MaLR 0 421 6 6 1769 252 59 0 0 chr1 155281669 155281703 -41913729 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 6 1769 1098 23 31 0 chr1 155281703 155281833 -41913599 - B1_Mus1 SINE Alu -13 135 2 6 1769 752 179 0 7 chr1 155281907 155282059 -41913373 + CT-rich Low_complexity Low_complexity 3 153 0 6 1769 495 173 38 9 chr1 155282087 155282192 -41913240 - B1_Mur3 SINE Alu -2 147 40 6 1769 817 185 27 0 chr1 155282229 155282375 -41913057 - B1_Mur4 SINE Alu 0 150 1 6 1769 302 294 0 0 chr1 155282494 155282562 -41912870 + ID4_ SINE ID 2 69 -14 6 1769 386 269 16 115 chr1 155282607 155282729 -41912703 + RSINE1 SINE B4 11 120 -45 6 1769 262 212 120 10 chr1 155283373 155283473 -41911959 + PB1D10 SINE Alu 5 115 -2 6 1769 400 311 46 57 chr1 155283890 155284084 -41911348 + B3A SINE B2 1 192 -6 6 1769 638 199 49 14 chr1 155284346 155284489 -41910943 + B1_Mur2 SINE Alu 2 149 0 6 1769 262 306 31 0 chr1 155285803 155285901 -41909531 + PB1D10 SINE Alu 2 102 -15 6 1769 465 19 0 0 chr1 155286020 155286074 -41909358 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6 1769 388 66 582 0 chr1 155286074 155286165 -41909267 - B2_Mm2 SINE B2 -51 144 1 6 1769 350 123 297 14 chr1 155286168 155286242 -41909190 - PB1D10 SINE Alu 0 117 23 6 1769 239 111 28 0 chr1 155286210 155286246 -41909186 - B1F SINE Alu -95 54 18 6 1769 695 223 30 8 chr1 155286561 155286692 -41908740 - RSINE1 SINE B4 -16 149 16 6 1769 216 0 0 0 chr1 155287577 155287601 -41907831 + (CCCCAG)n Simple_repeat Simple_repeat 6 29 0 6 1769 553 259 7 14 chr1 155288296 155288441 -41906991 + B1F2 SINE Alu 5 148 -1 6 1769 3645 196 21 127 chr1 155288623 155288821 -41906611 - RMER19B LTR ERVK -41 861 670 6 1769 198 0 0 0 chr1 155288821 155288843 -41906589 + (CAG)n Simple_repeat Simple_repeat 1 22 0 6 1769 3645 196 21 127 chr1 155288843 155289607 -41905825 - RMER19B LTR ERVK -233 669 1 6 1769 2238 96 9 64 chr1 155289822 155290168 -41905264 + ORR1A2 LTR MaLR 1 327 0 6 1769 2310 199 185 29 chr1 155290272 155290894 -41904538 - RLTR40 LTR ERVK -5 812 94 6 1769 312 265 59 30 chr1 155290973 155291074 -41904358 - B4A SINE B4 -187 105 2 6 1769 400 264 79 18 chr1 155291131 155291342 -41904090 - L1M4 LINE L1 -1223 4923 4689 6 1769 277 206 217 14 chr1 155291399 155291468 -41903964 + B4 SINE B4 2 84 -208 6 1769 1111 104 79 5 chr1 155291592 155291794 -41903638 - Lx2B LINE L1 -264 6736 6520 6 1769 461 188 23 107 chr1 155291794 155291806 -41903626 - MT2B LTR ERVL -332 269 232 6 1769 665 124 0 0 chr1 155291806 155291903 -41903529 - B1_Mus1 SINE Alu -40 108 12 6 1769 362 291 85 33 chr1 155291825 155291978 -41903454 - B4 SINE B4 -113 179 19 6 1769 461 188 23 107 chr1 155291903 155291925 -41903507 - MT2B LTR ERVL -332 231 150 6 1769 668 240 16 0 chr1 155291987 155292112 -41903320 + B1_Mur1 SINE Alu 11 137 -12 6 1769 270 56 0 0 chr1 155292112 155292148 -41903284 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 6 1769 331 294 196 0 chr1 155292296 155292398 -41903034 + RSINE1 SINE B4 14 135 -30 6 1769 216 0 0 0 chr1 155292403 155292427 -41903005 + (CACAC)n Simple_repeat Simple_repeat 5 28 0 6 1769 195 129 0 0 chr1 155292549 155292580 -41902852 + (GAA)n Simple_repeat Simple_repeat 2 32 0 6 1769 317 218 80 13 chr1 155293329 155293417 -41902015 - ID4_ SINE ID -55 97 5 6 1769 238 292 55 55 chr1 155293678 155293693 -41901739 - RSINE1 SINE B4 -16 149 131 6 1769 402 115 0 0 chr1 155293693 155293754 -41901678 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1769 238 292 55 55 chr1 155293754 155293883 -41901549 - RSINE1 SINE B4 -35 130 5 6 1769 594 181 121 0 chr1 155293991 155294107 -41901325 + B1F SINE Alu 5 134 -15 6 1769 25 0 0 0 chr1 155294118 155294143 -41901289 + AT_rich Low_complexity Low_complexity 1 25 0 6 1769 831 83 0 0 chr1 155294181 155294289 -41901143 + B2_Mm2 SINE B2 1 108 -87 6 1769 711 295 69 22 chr1 155294412 155294686 -41900746 + B4A SINE B4 3 289 -3 6 1769 247 81 0 98 chr1 155295186 155295227 -41900205 + B1_Mur4 SINE Alu 1 38 -112 6 1769 821 174 21 0 chr1 155295240 155295384 -41900048 + B1_Mus1 SINE Alu 2 148 0 6 1769 227 189 0 0 chr1 155295384 155295437 -41899995 + A-rich Low_complexity Low_complexity 1 53 0 6 1769 450 139 90 34 chr1 155295437 155295526 -41899906 + URR1B DNA MER1_type 131 224 -1 6 1769 220 354 50 78 chr1 155295526 155295642 -41899790 - B4 SINE B4 -145 147 36 6 1769 507 299 22 43 chr1 155295719 155295904 -41899528 + B3A SINE B2 2 182 -16 6 1769 485 262 48 112 chr1 155296117 155296169 -41899263 - B4 SINE B4 -23 269 131 6 1769 811 149 22 15 chr1 155296169 155296305 -41899127 - B1_Mur1 SINE Alu 0 149 13 6 1769 485 262 48 112 chr1 155296305 155296323 -41899109 - B4 SINE B4 -23 130 77 6 1769 1538 210 58 47 chr1 155296363 155296728 -41898704 - MTE2b LTR MaLR -1 378 10 6 1769 1084 56 28 0 chr1 155296732 155296874 -41898558 + B1_Mus1 SINE Alu 3 148 0 6 1769 25 51 0 0 chr1 155296874 155296913 -41898519 + AT_rich Low_complexity Low_complexity 1 39 0 6 1769 283 291 152 8 chr1 155297081 155297199 -41898233 - ID_B1 SINE B4 -6 218 84 6 1769 426 202 133 9 chr1 155297095 155297200 -41898232 - B1F1 SINE Alu -30 119 2 6 1769 337 276 180 20 chr1 155297310 155297410 -41898022 + ID_B1 SINE B4 98 213 -11 6 1769 1518 64 0 0 chr1 155297462 155297650 -41897782 + B2_Mm1t SINE B2 2 189 -4 6 1769 349 315 42 84 chr1 155297667 155297809 -41897623 + B1F1 SINE Alu 9 144 -5 6 1769 223 250 62 0 chr1 155297810 155297874 -41897558 + GA-rich Low_complexity Low_complexity 2 69 0 6 1769 535 246 24 24 chr1 155297896 155298021 -41897411 + B1_Mur1 SINE Alu 9 133 -16 6 1769 967 45 98 0 chr1 155298248 155298381 -41897051 - B1_Mus2 SINE Alu 0 147 2 6 1769 327 296 25 0 chr1 155298421 155298502 -41896930 - MER5A DNA MER1_type -80 109 27 6 1769 882 81 86 29 chr1 155298939 155299078 -41896354 - B1_Mus1 SINE Alu 0 148 2 6 1769 478 281 0 29 chr1 155299803 155299942 -41895490 + ID_B1 SINE B4 1 135 -89 6 1769 401 262 58 39 chr1 155299967 155300122 -41895310 - MLT1D LTR MaLR -346 159 2 6 1769 324 250 13 141 chr1 155300306 155300332 -41895100 - ID_B1 SINE B4 -13 211 82 7 1769 582 174 16 65 chr1 155300332 155300455 -41894977 - B1_Mur3 SINE Alu -32 117 1 7 1769 658 89 295 0 chr1 155300645 155300757 -41894675 - B1_Mus1 SINE Alu -1 147 3 7 1769 323 212 21 105 chr1 155301282 155301296 -41894136 + MT2B LTR ERVL 154 159 -442 7 1769 600 140 21 0 chr1 155301296 155301389 -41894043 + B1_Mus2 SINE Alu 1 95 -52 7 1769 1007 116 26 0 chr1 155301387 155301542 -41893890 + B2_Mm1t SINE B2 12 170 -23 7 1769 331 137 195 28 chr1 155301579 155301681 -41893751 + B2_Mm2 SINE B2 47 192 -1 7 1769 243 222 0 50 chr1 155303493 155303673 -41891759 + (CCA)n Simple_repeat Simple_repeat 1 171 0 7 1769 568 96 0 0 chr1 155305793 155305866 -41889566 + tRNA-Val-GTA tRNA tRNA 1 73 -3 7 1769 1027 97 13 40 chr1 155305887 155306038 -41889394 + B1_Mus1 SINE Alu 2 148 0 7 1769 216 0 0 0 chr1 155306066 155306090 -41889342 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1769 2235 60 63 0 chr1 155306983 155307283 -41888149 + L1_Mus1 LINE L1 6249 6567 0 7 1769 22 0 0 0 chr1 155308797 155308819 -41886613 + AT_rich Low_complexity Low_complexity 1 22 0 7 1769 389 181 14 0 chr1 155308989 155309061 -41886371 - PB1D9 SINE Alu 0 120 48 7 1769 552 184 73 15 chr1 155309086 155309204 -41886228 + B1_Mus1 SINE Alu 3 119 -1 7 1769 353 292 152 7 chr1 155309204 155309217 -41886215 + B4 SINE B4 127 238 -54 7 1769 254 301 95 12 chr1 155309215 155309299 -41886133 + PB1D9 SINE Alu 13 103 -17 7 1769 275 296 7 11 chr1 155310143 155310255 -41885177 + PB1 SINE Alu 1 112 -37 7 1769 681 78 0 37 chr1 155311135 155311269 -41884163 + (CAAA)n Simple_repeat Simple_repeat 1 129 0 7 1769 428 228 8 23 chr1 155311282 155311425 -41884007 + B3A SINE B2 1 203 -13 7 1769 577 174 206 19 chr1 155313547 155313738 -41881694 + ORR1C2 LTR MaLR 154 388 -6 7 1769 210 343 165 39 chr1 155313931 155314113 -41881319 - B4 SINE B4 -86 206 2 7 1769 1213 34 0 7 chr1 155314419 155314566 -41880866 - B1_Mm SINE Alu 0 147 2 7 1769 29 0 0 0 chr1 155314614 155314643 -41880789 + AT_rich Low_complexity Low_complexity 1 29 0 7 1769 216 315 53 40 chr1 155314901 155314977 -41880455 + BC1_Mm scRNA scRNA 2 78 -74 7 1769 243 325 13 0 chr1 155315235 155315312 -41880120 + PB1D10 SINE Alu 39 116 -1 7 1769 1217 79 84 11 chr1 155315316 155315495 -41879937 + B2_Mm2 SINE B2 2 193 -2 7 1769 1267 88 55 0 chr1 155315499 155315681 -41879751 + B2_Mm1t SINE B2 2 193 0 7 1769 615 103 254 49 chr1 155315726 155315848 -41879584 + B1_Mus1 SINE Alu 2 148 0 7 1769 566 263 25 8 chr1 155316320 155316466 -41878966 - B1_Mur4 SINE Alu 0 150 1 7 1769 1079 113 30 56 chr1 155316523 155316720 -41878712 + B2_Mm1a SINE B2 2 193 0 7 1769 962 97 0 46 chr1 155317010 155317162 -41878270 - B1_Mm SINE Alu -1 146 2 7 1769 965 99 21 14 chr1 155317338 155317481 -41877951 + B1_Mus1 SINE Alu 5 148 0 7 1769 960 126 58 37 chr1 155318354 155318544 -41876888 + B2_Mm2 SINE B2 2 195 0 7 1769 204 132 26 0 chr1 155319699 155319737 -41875695 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1770 750 141 0 16 chr1 155320648 155320771 -41874661 - B2_Mm2 SINE B2 -72 123 3 7 1770 216 271 14 28 chr1 155321025 155321097 -41874335 + B1F1 SINE Alu 78 148 -1 7 1770 731 171 7 20 chr1 155321899 155322048 -41873384 - B1_Mus1 SINE Alu 0 148 2 7 1770 221 306 0 0 chr1 155322054 155322103 -41873329 - B1F SINE Alu -6 143 95 7 1770 25 0 0 0 chr1 155322365 155322390 -41873042 + AT_rich Low_complexity Low_complexity 1 25 0 7 1770 268 257 0 28 chr1 155324036 155324108 -41871324 - ID4 SINE ID -11 72 3 7 1770 253 237 100 17 chr1 155325427 155325487 -41869945 - ID4_ SINE ID -2 81 17 7 1770 1348 72 44 0 chr1 155325491 155325672 -41869760 - B2_Mm2 SINE B2 -4 191 3 7 1770 403 232 188 0 chr1 155325680 155325792 -41869640 - B1F1 SINE Alu -7 142 10 7 1770 250 292 156 0 chr1 155326503 155326599 -41868833 + MTE2a LTR MaLR 226 336 -43 7 1770 1250 85 0 28 chr1 155326736 155326917 -41868515 - B2_Mm2 SINE B2 -19 176 1 7 1770 563 276 8 45 chr1 155327141 155327274 -41868158 - B1_Mur2 SINE Alu -20 129 2 7 1770 285 292 144 10 chr1 155327362 155327459 -41867973 + B4 SINE B4 37 146 -146 7 1770 486 261 97 21 chr1 155327600 155327745 -41867687 + B3 SINE B2 4 159 -57 7 1770 1044 69 14 14 chr1 155328547 155328694 -41866738 + B1_Mus2 SINE Alu 1 147 0 7 1770 313 241 0 92 chr1 155328729 155328816 -41866616 + PB1D9 SINE Alu 35 113 -7 7 1770 1291 58 87 0 chr1 155329127 155329300 -41866132 + B2_Mm1t SINE B2 2 189 -4 7 1770 189 370 49 0 chr1 155329946 155330027 -41865405 + L2 LINE L2 305 389 -3030 7 1770 309 200 28 14 chr1 155331316 155331387 -41864045 - B2_Mm1t SINE B2 -73 120 49 7 1770 1154 118 6 0 chr1 155331406 155331576 -41863856 - B2_Mm1t SINE B2 -22 171 1 7 1770 287 253 77 93 chr1 155331630 155331813 -41863619 + B3A SINE B2 11 190 -5 7 1770 186 71 0 0 chr1 155331876 155331904 -41863528 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1770 344 263 105 0 chr1 155332140 155332235 -41863197 + B1_Mur1 SINE Alu 43 147 -2 7 1770 487 211 175 48 chr1 155332241 155332430 -41863002 + B3 SINE B2 1 213 -3 7 1770 520 101 0 18 chr1 155332586 155332675 -41862757 + B1_Mus2 SINE Alu 37 147 0 7 1770 452 217 43 9 chr1 155332704 155332820 -41862612 + PB1D9 SINE Alu 1 120 0 7 1770 1108 91 18 35 chr1 155333264 155333423 -41862009 + B2_Mm2 SINE B2 9 166 -29 7 1770 1047 103 14 7 chr1 155333423 155333569 -41861863 + B1_Mus2 SINE Alu 1 147 0 7 1770 1108 91 18 35 chr1 155333569 155333580 -41861852 + B2_Mm2 SINE B2 167 176 -19 7 1770 292 220 91 81 chr1 155333801 155333900 -41861532 - PB1D9 SINE Alu 0 120 21 7 1770 227 279 202 16 chr1 155333900 155333925 -41861507 - ID_B1 SINE B4 -1 223 77 7 1770 238 317 36 24 chr1 155334989 155335073 -41860359 - B1_Mm SINE Alu -55 92 8 7 1770 1253 47 0 0 chr1 155335242 155335390 -41860042 + B1_Mus1 SINE Alu 1 148 0 7 1770 582 244 57 43 chr1 155335435 155335576 -41859856 + B1_Mur2 SINE Alu 7 149 0 7 1770 412 280 246 16 chr1 155335578 155335753 -41859679 + B3 SINE B2 17 211 -5 7 1770 703 140 50 79 chr1 155335917 155336057 -41859375 - B1_Mur4 SINE Alu 0 150 15 7 1770 1179 106 15 50 chr1 155336652 155336851 -41858581 - B2_Mm2 SINE B2 -2 193 2 7 1770 198 0 0 0 chr1 155336925 155336947 -41858485 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1770 520 335 14 33 chr1 155337071 155337243 -41858189 + ID_B1 SINE B4 16 190 -34 7 1770 1642 163 50 91 chr1 155337243 155337487 -41857945 + RLTR14 LTR ERV1 1 239 -143 7 1770 1162 62 0 0 chr1 155337487 155337633 -41857799 - B1_Mus2 SINE Alu -1 146 1 7 1770 1642 163 50 91 chr1 155337633 155337786 -41857646 + RLTR14 LTR ERV1 240 382 0 7 1770 520 335 14 33 chr1 155337786 155337826 -41857606 + ID_B1 SINE B4 191 224 0 7 1770 1191 54 0 20 chr1 155337862 155338012 -41857420 + B1_Mus2 SINE Alu 1 147 0 7 1770 1086 75 7 27 chr1 155338034 155338184 -41857248 + B1_Mus1 SINE Alu 1 147 -1 7 1770 600 228 0 8 chr1 155338184 155338308 -41857124 + RSINE1 SINE B4 8 130 -35 7 1770 350 21 21 0 chr1 155338327 155338374 -41857058 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1770 560 296 17 96 chr1 155338478 155338717 -41856715 + ID_B1 SINE B4 2 221 -3 7 1770 286 226 0 61 chr1 155338726 155338792 -41856640 + tRNA-Ala-GCY_ tRNA tRNA 1 62 -13 7 1770 476 16 0 16 chr1 155338800 155338862 -41856570 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1770 342 0 0 0 chr1 155339365 155339403 -41856029 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1770 571 261 75 30 chr1 155339416 155339550 -41855882 - B1_Mur2 SINE Alu -8 141 2 7 1770 257 227 79 149 chr1 155339454 155339568 -41855864 - MT2B LTR ERVL -345 256 151 7 1770 534 223 69 0 chr1 155339624 155339754 -41855678 + ID_B1 SINE B4 82 220 -4 7 1770 275 273 125 48 chr1 155339757 155339808 -41855624 + PB1D10 SINE Alu 6 115 0 7 1770 277 216 0 0 chr1 155339808 155339859 -41855573 + ID_B1 SINE B4 174 224 0 7 1770 874 83 17 0 chr1 155340184 155340304 -41855128 - B1_Mm SINE Alu -5 142 21 7 1770 572 236 8 31 chr1 155340311 155340438 -41854994 - B1_Mur3 SINE Alu -19 130 7 7 1770 1663 185 162 13 chr1 155340517 155340900 -41854532 - RMER10A LTR ERVL -1 441 2 7 1770 201 74 0 0 chr1 155341509 155341536 -41853896 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1770 1246 48 0 0 chr1 155341536 155341683 -41853749 - B1_Mus2 SINE Alu 0 147 1 7 1770 1021 222 111 51 chr1 155341811 155341947 -41853485 - RMER5 LTR ERV1 0 534 403 7 1770 1130 83 0 0 chr1 155341947 155342092 -41853340 + B1_Mus1 SINE Alu 3 147 -1 7 1770 1021 222 111 51 chr1 155342092 155342287 -41853145 - RMER5 LTR ERV1 -132 402 183 7 1770 180 0 0 0 chr1 155342492 155342512 -41852920 + (CACAC)n Simple_repeat Simple_repeat 5 24 0 7 1770 669 278 86 0 chr1 155342653 155342851 -41852581 + B3 SINE B2 2 216 0 7 1770 948 71 8 0 chr1 155342857 155342983 -41852449 + B1_Mm SINE Alu 18 144 -3 7 1770 183 42 0 0 chr1 155342983 155343007 -41852425 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1770 449 267 132 75 chr1 155343024 155343372 -41852060 - RLTR9A LTR ERVK 0 368 1 7 1770 338 315 85 0 chr1 155343377 155343493 -41851939 + B1_Mur3 SINE Alu 1 126 -23 8 1770 213 277 29 58 chr1 155343507 155343576 -41851856 + ID4 SINE ID 14 80 -3 8 1770 609 265 112 32 chr1 155343514 155343701 -41851731 + ID_B1 SINE B4 23 224 0 8 1770 213 65 0 0 chr1 155343709 155343740 -41851692 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1770 1029 128 81 11 chr1 155343741 155343915 -41851517 - B2_Mm1t SINE B2 -7 186 1 8 1770 185 94 0 30 chr1 155344005 155344038 -41851394 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 8 1770 1138 69 7 0 chr1 155344040 155344185 -41851247 - B1_Mus2 SINE Alu 0 147 2 8 1770 478 195 0 0 chr1 155344190 155344272 -41851160 - B1_Mur1 SINE Alu 0 149 68 8 1770 504 179 108 67 chr1 155344278 155344321 -41851111 - MT2B LTR ERVL -475 126 89 8 1770 1210 98 9 81 chr1 155344321 155344531 -41850901 + B2_Mm2 SINE B2 1 195 0 8 1770 504 179 108 67 chr1 155344531 155344607 -41850825 - MT2B LTR ERVL -513 88 2 8 1770 245 197 28 0 chr1 155344739 155344785 -41850647 + A-rich Low_complexity Low_complexity 1 48 0 8 1770 1201 68 0 0 chr1 155344785 155344932 -41850500 + B1_Mus2 SINE Alu 1 147 0 8 1770 245 197 28 0 chr1 155344932 155344956 -41850476 + A-rich Low_complexity Low_complexity 49 72 0 8 1770 310 94 31 0 chr1 155344957 155345021 -41850411 + (CAA)n Simple_repeat Simple_repeat 1 66 0 8 1770 282 116 0 0 chr1 155345171 155345214 -41850218 + (T)n Simple_repeat Simple_repeat 1 43 0 8 1770 1157 81 0 0 chr1 155345215 155345363 -41850069 - B1_Mus1 SINE Alu 0 148 1 8 1770 406 220 87 1 chr1 155345402 155345502 -41849930 - MTD LTR MaLR -20 399 266 8 1770 868 271 48 0 chr1 155345513 155345723 -41849709 - MTD LTR MaLR -187 232 13 8 1770 1277 73 96 0 chr1 155345744 155345922 -41849510 + B2_Mm2 SINE B2 1 195 0 8 1770 1282 33 0 0 chr1 155345940 155346090 -41849342 + B2_Mm1t SINE B2 2 151 -42 8 1770 1521 42 0 73 chr1 155346422 155346597 -41848835 + B2_Mm2 SINE B2 2 169 -26 8 1770 1231 88 42 42 chr1 155346597 155346786 -41848646 - B2_Mm2 SINE B2 -5 190 2 8 1770 1521 42 0 73 chr1 155346786 155346816 -41848616 + B2_Mm2 SINE B2 170 192 -3 8 1770 189 0 0 0 chr1 155346850 155346871 -41848561 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1770 713 53 11 0 chr1 155346871 155346966 -41848466 - B1_Mus2 SINE Alu 0 147 52 8 1770 851 36 11 4 chr1 155346942 155347070 -41848362 + B1_Mus1 SINE Alu 21 148 0 8 1770 189 0 0 0 chr1 155347095 155347116 -41848316 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8 1770 1547 140 20 108 chr1 155347119 155347471 -41847961 - RLTRETN_Mm LTR ERVK -1 321 1 8 1770 1197 41 0 14 chr1 155347553 155347700 -41847732 + B1_Mm SINE Alu 3 147 0 8 1770 216 0 0 0 chr1 155347700 155347724 -41847708 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1770 1295 217 30 53 chr1 155347747 155348006 -41847426 + ORR1D1 LTR MaLR 79 338 -36 8 1770 1629 48 0 0 chr1 155348006 155348195 -41847237 - B2_Mm1t SINE B2 -3 190 2 8 1770 1295 217 30 53 chr1 155348195 155348237 -41847195 + ORR1D1 LTR MaLR 339 373 -1 8 1770 403 359 31 0 chr1 155348237 155348365 -41847067 + RSINE1 SINE B4 3 134 -31 8 1770 859 49 197 0 chr1 155348447 155348560 -41846872 + B1_Mm SINE Alu 1 137 -10 8 1770 252 0 0 0 chr1 155348560 155348588 -41846844 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1770 210 37 0 0 chr1 155349520 155349547 -41845885 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1770 1094 90 0 7 chr1 155349547 155349684 -41845748 - B1_Mus2 SINE Alu -9 138 2 8 1770 630 253 144 21 chr1 155349690 155349884 -41845548 - ORR1D2 LTR MaLR 0 370 153 8 1770 1500 169 8 8 chr1 155349854 155350098 -41845334 + ORR1B2 LTR MaLR 124 367 0 8 1770 26 30 0 0 chr1 155350211 155350244 -41845188 + AT_rich Low_complexity Low_complexity 1 33 0 8 1770 490 225 72 0 chr1 155350821 155350932 -41844500 + PB1D7 SINE Alu 1 119 -1 8 1770 553 300 53 53 chr1 155350965 155351134 -41844298 + B3A SINE B2 9 177 -21 8 1770 324 285 21 61 chr1 155351166 155351299 -41844133 + BC1_Mm scRNA scRNA 4 136 -16 8 1770 596 287 42 0 chr1 155351299 155351442 -41843990 + RSINE1 SINE B4 2 150 -15 8 1770 1160 197 5 5 chr1 155351587 155351796 -41843636 + B3 SINE B2 6 214 -2 8 1770 1224 49 0 0 chr1 155351796 155351940 -41843492 + B1_Mus1 SINE Alu 1 144 -4 8 1770 198 0 0 0 chr1 155351940 155351962 -41843470 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 1770 834 171 29 0 chr1 155351988 155352128 -41843304 + B1_Mus1 SINE Alu 1 144 -4 8 1770 414 0 0 0 chr1 155352139 155352185 -41843247 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 8 1770 36 0 0 0 chr1 155352214 155352250 -41843182 + AT_rich Low_complexity Low_complexity 1 36 0 8 1770 559 75 0 0 chr1 155352254 155352334 -41843098 + B1_Mus2 SINE Alu 68 147 0 8 1770 216 331 31 86 chr1 155352330 155352492 -41842940 - B2_Mm1t SINE B2 -14 179 27 8 1770 577 99 0 0 chr1 155352514 155352595 -41842837 - B2_Mm2 SINE B2 -113 82 2 8 1770 1141 162 13 99 chr1 155352665 155352856 -41842576 - B3 SINE B2 -3 213 41 8 1770 1201 49 7 0 chr1 155352856 155353000 -41842432 - B1_Mus2 SINE Alu -1 146 2 8 1770 1141 162 13 99 chr1 155353000 155353041 -41842391 - B3 SINE B2 -176 40 1 8 1770 226 314 112 19 chr1 155353049 155353156 -41842276 - B1_Mur2 SINE Alu -7 142 26 8 1770 442 252 115 29 chr1 155353176 155353315 -41842117 - ID_B1 SINE B4 -1 223 73 8 1770 396 0 0 0 chr1 155354579 155354623 -41840809 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1770 288 0 0 0 chr1 155354623 155354654 -41840778 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1770 3262 55 177 2 chr1 155355129 155355565 -41839867 + RLTR1B LTR ERV1 1 512 0 8 1770 891 28 0 0 chr1 155355585 155355691 -41839741 + (TC)n Simple_repeat Simple_repeat 2 107 0 8 1770 709 233 0 0 chr1 155355694 155355827 -41839605 - B1_Mus1 SINE Alu -15 133 1 8 1770 1068 39 0 0 chr1 155355877 155356007 -41839425 + B1_Mus1 SINE Alu 13 142 -6 8 1770 420 73 59 0 chr1 155356584 155356652 -41838780 - B2_Mm1t SINE B2 -3 190 119 8 1770 1640 42 0 0 chr1 155356652 155356843 -41838589 - B2_Mm1a SINE B2 -1 192 2 8 1770 420 241 93 105 chr1 155357161 155357256 -41838176 + ID_B1 SINE B4 2 94 -130 8 1770 268 227 191 64 chr1 155357256 155357350 -41838082 + PB1D10 SINE Alu 1 106 -11 8 1770 274 310 161 7 chr1 155357468 155357611 -41837821 + RSINE1 SINE B4 1 165 0 8 1770 1016 111 60 16 chr1 155357913 155358097 -41837335 - B2_Mm2 SINE B2 -1 194 3 8 1770 298 264 0 94 chr1 155358863 155358959 -41836473 + PB1D7 SINE Alu 32 118 -2 8 1770 1507 43 16 0 chr1 155358973 155359159 -41836273 + B2_Mm1a SINE B2 2 190 -3 8 1770 701 225 42 7 chr1 155359180 155359316 -41836116 + B3 SINE B2 1 142 -74 8 1770 360 0 0 0 chr1 155359316 155359356 -41836076 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1770 482 239 0 0 chr1 155359993 155360081 -41835351 + ID_B1 SINE B4 136 223 -1 8 1770 926 153 33 41 chr1 155360220 155360589 -41834843 - RMER10B LTR ERVL -7 391 62 8 1770 328 215 50 10 chr1 155360742 155360843 -41834589 + B1_Mur1 SINE Alu 1 106 -43 8 1770 361 252 36 36 chr1 155360819 155360835 -41834597 + B1F SINE Alu 15 123 -24 8 1770 480 206 11 11 chr1 155360835 155360928 -41834504 + ID_B1 SINE B4 110 202 -22 8 1770 390 244 49 130 chr1 155361617 155361801 -41833631 - B3A SINE B2 0 198 30 8 1770 373 297 72 0 chr1 155361816 155361927 -41833505 - PB1D7 SINE Alu 0 120 2 8 1770 454 280 42 0 chr1 155361960 155362078 -41833354 - ID_B1 SINE B4 -8 216 94 8 1770 281 232 53 108 chr1 155362739 155362868 -41832564 + PB1D10 SINE Alu 6 120 0 8 1770 1400 77 11 6 chr1 155362872 155363055 -41832377 + B2_Mm2 SINE B2 3 186 -9 8 1770 393 209 121 53 chr1 155363055 155363192 -41832240 + B1_Mur2 SINE Alu 2 136 -13 8 1770 240 111 0 0 chr1 155363192 155363228 -41832204 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 8 1770 400 134 29 15 chr1 155363228 155363296 -41832136 + B1_Mur2 SINE Alu 50 118 -31 8 1770 396 257 130 14 chr1 155363313 155363451 -41831981 - ID_B1 SINE B4 -1 223 70 8 1770 850 249 75 40 chr1 155363566 155363767 -41831665 + MER21B LTR ERV1 210 417 -446 8 1770 438 322 201 48 chr1 155363778 155364078 -41831354 + MER21B LTR ERV1 486 831 -32 8 1770 229 284 27 0 chr1 155364120 155364194 -41831238 + ID4 SINE ID 2 77 -6 8 1770 181 293 55 100 chr1 155364348 155364438 -41830994 - L2a LINE L2 -54 3372 3289 8 1770 352 244 13 0 chr1 155364438 155364516 -41830916 + ID4 SINE ID 2 80 -3 8 1770 181 293 55 100 chr1 155364516 155364535 -41830897 - L2a LINE L2 -138 3288 3268 8 1770 1171 78 84 0 chr1 155364661 155364828 -41830604 + B2_Mm2 SINE B2 1 181 -14 8 1770 1462 56 6 0 chr1 155364871 155365049 -41830383 + B2_Mm1a SINE B2 1 179 -14 8 1770 21 0 0 31 chr1 155365049 155365068 -41830364 + AT_rich Low_complexity Low_complexity 1 19 0 8 1770 1301 27 0 0 chr1 155365068 155365215 -41830217 - B1_Mm SINE Alu 0 147 1 8 1770 21 0 0 31 chr1 155365215 155365227 -41830205 + AT_rich Low_complexity Low_complexity 1 12 0 8 1770 827 20 0 10 chr1 155365231 155365333 -41830099 + (GAA)n Simple_repeat Simple_repeat 2 102 0 8 1770 870 137 58 0 chr1 155365575 155365714 -41829718 - B1_Mus1 SINE Alu 0 148 2 8 1770 21 0 0 0 chr1 155365759 155365780 -41829652 + AT_rich Low_complexity Low_complexity 1 21 0 8 1770 782 227 105 31 chr1 155365800 155365991 -41829441 + B3 SINE B2 6 210 -6 8 1770 690 249 70 53 chr1 155366289 155366467 -41828965 + B3 SINE B2 1 185 -31 8 1770 432 0 0 0 chr1 155366467 155366515 -41828917 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1770 718 163 34 47 chr1 155366583 155366731 -41828701 + B1_Mur1 SINE Alu 3 148 -1 8 1770 213 225 0 0 chr1 155366750 155366799 -41828633 + A-rich Low_complexity Low_complexity 1 49 0 9 1770 1038 89 14 7 chr1 155366799 155366946 -41828486 + B1_Mus1 SINE Alu 1 148 0 9 1770 213 225 0 0 chr1 155366946 155366967 -41828465 + A-rich Low_complexity Low_complexity 50 70 0 9 1770 762 250 121 16 chr1 155366976 155367224 -41828208 + B4A SINE B4 1 274 -18 9 1770 423 0 0 0 chr1 155367232 155367279 -41828153 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1770 243 290 29 0 chr1 155367279 155367348 -41828084 + ID4_ SINE ID 2 72 -11 9 1770 377 205 0 13 chr1 155367556 155367635 -41827797 + ID_B1 SINE B4 79 156 -68 9 1770 540 257 48 35 chr1 155367636 155367781 -41827651 + RSINE1 SINE B4 2 148 -17 9 1770 432 0 0 0 chr1 155367806 155367854 -41827578 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1770 287 61 0 39 chr1 155368006 155368042 -41827390 + (TTTTTA)n Simple_repeat Simple_repeat 6 40 0 9 1770 1574 37 16 0 chr1 155368042 155368229 -41827203 - B2_Mm1a SINE B2 -3 190 1 9 1770 287 61 0 39 chr1 155368229 155368243 -41827189 + (TTTTTA)n Simple_repeat Simple_repeat 4 17 0 9 1770 207 0 0 0 chr1 155368245 155368268 -41827164 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1770 1016 136 0 0 chr1 155368272 155368419 -41827013 + B1_Mur3 SINE Alu 2 148 -1 9 1770 1149 74 7 44 chr1 155368640 155368832 -41826600 - B2_Mm2 SINE B2 -1 192 1 9 1770 207 0 0 0 chr1 155368954 155368977 -41826455 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1770 1859 190 70 12 chr1 155369173 155369589 -41825843 - RMER10A LTR ERVL -2 440 1 9 1770 565 281 142 12 chr1 155369589 155369758 -41825674 - ID_B1 SINE B4 -32 192 2 9 1770 861 174 0 14 chr1 155369866 155370006 -41825426 + B1_Mur3 SINE Alu 2 139 -10 9 1770 1228 79 66 17 chr1 155370081 155370262 -41825170 + B2_Mm1t SINE B2 4 193 0 9 1770 221 0 35 0 chr1 155370275 155370304 -41825128 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1770 873 110 96 0 chr1 155370311 155370447 -41824985 + B2_Mm2 SINE B2 40 188 -7 9 1770 351 0 0 0 chr1 155370455 155370494 -41824938 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1770 2121 107 45 0 chr1 155370779 155371089 -41824343 + ORR1A3 LTR MaLR 1 324 -2 9 1770 1351 76 38 0 chr1 155371099 155371284 -41824148 + B2_Mm1a SINE B2 2 193 0 9 1770 24 0 0 0 chr1 155371394 155371418 -41824014 + AT_rich Low_complexity Low_complexity 1 24 0 9 1770 789 164 24 36 chr1 155371675 155371840 -41823592 - URR1B DNA MER1_type -61 164 2 9 1770 215 260 0 20 chr1 155371921 155371972 -41823460 - B4A SINE B4 -242 50 1 9 1770 2248 128 91 22 chr1 155372006 155372451 -41822981 + BGLII_B LTR ERVK 4 435 -6 9 1770 268 154 0 37 chr1 155372647 155372674 -41822758 + BGLII_B LTR ERVK 502 528 -25 9 1770 1301 120 0 5 chr1 155372674 155372866 -41822566 - B2_Mm2 SINE B2 -4 191 1 9 1770 268 154 0 37 chr1 155372866 155372892 -41822540 + BGLII_B LTR ERVK 529 553 0 9 1770 889 206 0 18 chr1 155372892 155373054 -41822378 - B3 SINE B2 -55 161 3 9 1770 469 140 163 0 chr1 155373080 155373183 -41822249 - B1_Mur1 SINE Alu -20 130 12 9 1770 374 239 102 76 chr1 155373164 155373282 -41822150 - MT2B LTR ERVL -314 287 167 9 1770 252 214 0 18 chr1 155373637 155373694 -41821738 - B3 SINE B2 0 216 161 9 1770 4671 177 99 15 chr1 155374004 155374768 -41820664 + RLTR25B LTR ERVK 4 820 -208 9 1770 243 0 0 0 chr1 155374768 155374795 -41820637 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1770 474 33 0 0 chr1 155374795 155374854 -41820578 + (GA)n Simple_repeat Simple_repeat 2 61 0 9 1770 4671 177 99 15 chr1 155374854 155375033 -41820399 + RLTR25B LTR ERVK 821 1026 -2 9 1770 257 284 15 0 chr1 155375379 155375446 -41819986 + RSINE1 SINE B4 65 132 -33 9 1770 436 299 0 33 chr1 155375502 155375623 -41819809 + PB1D10 SINE Alu 1 117 0 9 1770 34 55 0 0 chr1 155375623 155375678 -41819754 + AT_rich Low_complexity Low_complexity 1 55 0 9 1770 988 114 0 7 chr1 155375687 155375828 -41819604 + B1_Mur3 SINE Alu 3 142 -7 9 1770 1138 136 11 0 chr1 155375834 155376011 -41819421 + B2_Mm1a SINE B2 1 179 -14 9 1770 308 146 0 35 chr1 155376029 155376086 -41819346 + B2_Mm2 SINE B2 47 101 -94 9 1770 498 61 0 0 chr1 155376101 155376167 -41819265 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1770 26 30 0 0 chr1 155376167 155376200 -41819232 + AT_rich Low_complexity Low_complexity 1 33 0 9 1770 404 245 111 1 chr1 155376223 155376332 -41819100 + PB1 SINE Alu 5 125 -2 9 1770 263 333 0 42 chr1 155376356 155376428 -41819004 + ID4 SINE ID 8 76 -7 9 1770 471 211 11 0 chr1 155376504 155376599 -41818833 + B3 SINE B2 2 97 -119 9 1770 24 0 0 0 chr1 155376687 155376711 -41818721 + AT_rich Low_complexity Low_complexity 1 24 0 9 1770 309 255 18 73 chr1 155376761 155376871 -41818561 + MT2B LTR ERVL 173 276 -325 9 1770 820 76 0 33 chr1 155376778 155376900 -41818532 + B1_Mus2 SINE Alu 30 147 0 9 1770 184 71 71 0 chr1 155376910 155376952 -41818480 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 9 1770 1862 171 22 30 chr1 155377054 155377458 -41817974 + RMER17C LTR ERVK 1 401 -9 9 1770 2058 140 21 43 chr1 155377549 155377968 -41817464 + RMER17C LTR ERVK 1 410 0 9 1770 788 239 60 6 chr1 155378238 155378344 -41817088 + B3 SINE B2 1 107 -109 9 1770 1621 177 38 67 chr1 155378344 155378504 -41816928 - RMER17C LTR ERVK -4 406 265 9 1770 1225 27 0 14 chr1 155378504 155378652 -41816780 + B1_Mm SINE Alu 2 147 0 9 1770 1621 177 38 67 chr1 155378652 155378909 -41816523 - RMER17C LTR ERVK -146 264 1 9 1770 788 239 60 6 chr1 155378909 155378970 -41816462 + B3 SINE B2 108 176 -40 9 1770 1447 217 64 54 chr1 155378976 155379365 -41816067 + RMER10B LTR ERVL 6 398 0 9 1770 280 210 16 31 chr1 155379941 155380005 -41815427 + MT2B2 LTR ERVL 168 230 -354 9 1770 545 205 148 0 chr1 155379948 155380070 -41815362 + B1_Mm SINE Alu 8 147 0 9 1770 21 0 0 0 chr1 155380070 155380091 -41815341 + AT_rich Low_complexity Low_complexity 1 21 0 9 1770 430 246 31 15 chr1 155380107 155380213 -41815219 + PB1D10 SINE Alu 13 117 0 9 1770 1193 42 21 0 chr1 155380215 155380359 -41815073 + B1_Mm SINE Alu 1 147 0 9 1770 271 268 0 79 chr1 155380374 155380463 -41814969 + ID_B1 SINE B4 143 224 0 9 1770 586 228 32 8 chr1 155380467 155380591 -41814841 + RSINE1 SINE B4 8 134 -31 9 1770 22 0 0 0 chr1 155380597 155380619 -41814813 + AT_rich Low_complexity Low_complexity 1 22 0 9 1770 604 95 12 0 chr1 155380635 155380719 -41814713 - B1_Mus2 SINE Alu -8 139 55 9 1770 214 200 0 0 chr1 155380729 155380769 -41814663 + (TAA)n Simple_repeat Simple_repeat 3 42 0 9 1770 864 147 21 7 chr1 155380818 155380962 -41814470 + B1_Mur4 SINE Alu 5 150 0 9 1770 633 185 21 4 chr1 155381363 155381483 -41813949 + MTC LTR MaLR 4 123 -273 9 1770 750 104 79 36 chr1 155381510 155381552 -41813880 + URR1A DNA MER1_type 81 121 -105 9 1770 4474 63 7 9 chr1 155381552 155382131 -41813301 + L1Md_F2 LINE L1 6003 6580 -2 9 1770 750 104 79 36 chr1 155382131 155382228 -41813204 + URR1A DNA MER1_type 122 225 -1 9 1770 927 93 21 21 chr1 155382320 155382462 -41812970 + B1_Mur4 SINE Alu 9 150 0 9 1770 1115 227 13 22 chr1 155382492 155382717 -41812715 + MTC LTR MaLR 199 421 0 9 1770 23 33 0 0 chr1 155383353 155383383 -41812049 + AT_rich Low_complexity Low_complexity 1 30 0 9 1770 290 180 20 0 chr1 155383408 155383458 -41811974 - B3A SINE B2 -146 52 2 9 1770 468 0 0 0 chr1 155383462 155383514 -41811918 + (TATG)n Simple_repeat Simple_repeat 4 55 0 9 1770 641 39 356 0 chr1 155383514 155383618 -41811814 - B1_Mus1 SINE Alu -7 141 1 9 1770 329 222 200 0 chr1 155383621 155383711 -41811721 - PB1D10 SINE Alu 0 117 10 9 1770 504 0 0 0 chr1 155383724 155383780 -41811652 + (TATG)n Simple_repeat Simple_repeat 3 58 0 9 1770 522 114 0 0 chr1 155383911 155383990 -41811442 + (TCCCC)n Simple_repeat Simple_repeat 2 80 0 9 1770 810 0 0 0 chr1 155384002 155384092 -41811340 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 9 1770 915 113 8 0 chr1 155384093 155384226 -41811206 - B1_Mus1 SINE Alu -13 135 2 9 1770 21 0 0 0 chr1 155384718 155384739 -41810693 + AT_rich Low_complexity Low_complexity 1 21 0 9 1770 227 308 0 0 chr1 155384747 155384799 -41810633 + ID SINE ID 2 53 -171 9 1770 416 197 79 122 chr1 155384819 155384958 -41810474 - RSINE1 SINE B4 -25 140 8 9 1770 192 40 0 0 chr1 155384959 155384984 -41810448 + (CCTTG)n Simple_repeat Simple_repeat 2 26 0 9 1770 884 236 9 28 chr1 155385164 155385382 -41810050 + B3 SINE B2 3 216 0 9 1770 477 230 55 8 chr1 155385622 155385749 -41809683 - B1F SINE Alu -16 133 1 9 1770 228 297 0 0 chr1 155385750 155385814 -41809618 + MER5A1 DNA MER1_type 103 166 0 9 1770 21 36 0 0 chr1 155385861 155385889 -41809543 + AT_rich Low_complexity Low_complexity 1 28 0 9 1770 1286 14 0 7 chr1 155385910 155386057 -41809375 + B1_Mm SINE Alu 1 146 -1 9 1770 728 170 80 15 chr1 155386126 155386263 -41809169 + B1_Mus1 SINE Alu 3 148 0 9 1770 215 79 26 0 chr1 155386270 155386308 -41809124 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1770 639 263 199 17 chr1 155387533 155387769 -41807663 + B4 SINE B4 2 280 -12 9 1770 966 33 0 0 chr1 155387778 155387900 -41807532 + (CA)n Simple_repeat Simple_repeat 2 123 0 9 1770 234 167 0 0 chr1 155387963 155387999 -41807433 - PB1D9 SINE Alu -5 115 80 9 1770 2071 139 53 20 chr1 155387999 155388396 -41807036 + RMER17C LTR ERVK 1 410 0 9 1770 652 175 8 0 chr1 155388447 155388573 -41806859 - B1_Mur2 SINE Alu -13 136 10 9 1770 694 138 90 23 chr1 155388815 155388948 -41806484 - B1_Mur4 SINE Alu 0 150 9 9 1770 1101 124 6 0 chr1 155388969 155389138 -41806294 + B2_Mm1t SINE B2 2 171 -22 9 1770 384 31 47 0 chr1 155389177 155389241 -41806191 + B2_Mm1a SINE B2 127 193 0 1 1770 1378 96 37 0 chr1 155389348 155389535 -41805897 - B2_Mm2 SINE B2 0 195 2 1 1770 621 211 23 0 chr1 155389813 155389941 -41805491 - B3 SINE B2 -85 131 1 1 1770 313 106 0 0 chr1 155391026 155391073 -41804359 + MTC LTR MaLR 11 57 -362 1 1770 533 125 0 0 chr1 155391066 155391161 -41804271 + B1_Mur4 SINE Alu 53 150 0 1 1770 1583 47 0 5 chr1 155391162 155391355 -41804077 + B2_Mm2 SINE B2 4 195 0 1 1770 824 136 225 6 chr1 155391366 155391544 -41803888 + MTC LTR MaLR 196 412 -9 1 1770 397 307 248 29 chr1 155391634 155391872 -41803560 - B4A SINE B4 -2 290 1 1 1770 1066 95 0 13 chr1 155391894 155392043 -41803389 - B1_Mus1 SINE Alu 0 148 2 1 1770 351 0 0 0 chr1 155392917 155392956 -41802476 + (ATTTG)n Simple_repeat Simple_repeat 2 40 0 1 1770 1005 76 13 46 chr1 155392956 155393099 -41802333 - B1_Mus2 SINE Alu -8 139 2 1 1770 920 104 287 6 chr1 155393119 155393283 -41802149 - B3 SINE B2 -6 210 1 1 1770 358 264 176 0 chr1 155393490 155393581 -41801851 - RSINE1 SINE B4 -25 140 34 1 1770 423 232 112 0 chr1 155393603 155393728 -41801704 - ID_B1 SINE B4 0 224 86 1 1770 198 71 0 0 chr1 155393772 155393800 -41801632 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1770 1419 54 32 0 chr1 155393907 155394093 -41801339 - B2_Mm2 SINE B2 -2 193 2 1 1770 186 43 0 0 chr1 155394209 155394232 -41801200 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1770 1188 68 0 7 chr1 155394232 155394381 -41801051 - B1_Mus1 SINE Alu 0 148 1 1 1770 1073 53 0 0 chr1 155395340 155395472 -41799960 - B1_Mus1 SINE Alu -16 132 1 1 1770 376 252 0 46 chr1 155395656 155395764 -41799668 + ID_B1 SINE B4 112 214 -10 1 1770 1237 35 7 0 chr1 155395777 155395922 -41799510 + B1_Mus2 SINE Alu 1 146 -1 1 1770 415 202 197 25 chr1 155395960 155396082 -41799350 + B1_Mur2 SINE Alu 1 143 -6 1 1770 830 110 22 0 chr1 155397266 155397402 -41798030 + B1_Mus1 SINE Alu 10 148 0 1 1770 342 179 0 0 chr1 155397403 155397436 -41797996 + A-rich Low_complexity Low_complexity 1 33 0 1 1770 1087 61 7 39 chr1 155397436 155397589 -41797843 + B1_Mus1 SINE Alu 1 148 0 1 1770 342 179 0 0 chr1 155397589 155397633 -41797799 + A-rich Low_complexity Low_complexity 34 77 0 1 1770 232 167 17 69 chr1 155397847 155397858 -41797574 - MT2B2 LTR ERVL -378 206 184 1 1770 234 147 0 0 chr1 155397858 155397892 -41797540 - B1_Mus2 SINE Alu -113 34 1 1 1770 232 167 17 69 chr1 155397892 155397905 -41797527 - MT2B2 LTR ERVL -378 183 152 1 1770 206 231 0 0 chr1 155397986 155398025 -41797407 + CT-rich Low_complexity Low_complexity 2 40 0 1 1770 583 254 15 15 chr1 155398055 155398187 -41797245 - B3 SINE B2 -25 191 60 1 1770 295 194 0 46 chr1 155398287 155398352 -41797080 + MTC LTR MaLR 1 62 -359 1 1770 640 256 97 86 chr1 155398394 155398457 -41796975 + L1MA4 LINE L1 5555 5618 -682 1 1770 313 258 67 0 chr1 155398457 155398546 -41796886 + PB1D10 SINE Alu 4 98 -19 1 1770 640 256 97 86 chr1 155398546 155398832 -41796600 + L1MA4 LINE L1 5619 5908 -392 1 1770 917 121 0 6 chr1 155398846 155399021 -41796411 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1 1770 435 155 0 0 chr1 155399022 155399125 -41796307 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1 1770 212 313 0 24 chr1 155399172 155399257 -41796175 + G-rich Low_complexity Low_complexity 5 87 0 1 1770 879 72 8 23 chr1 155399409 155399537 -41795895 + B1_Mus1 SINE Alu 23 148 0 1 1770 306 0 0 0 chr1 155399545 155399579 -41795853 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1770 205 75 24 24 chr1 155399607 155399648 -41795784 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1770 733 188 35 0 chr1 155399654 155399798 -41795634 - B1_Mur2 SINE Alu 0 149 1 1 1770 768 171 26 7 chr1 155399804 155399957 -41795475 - MTD LTR MaLR 0 419 264 1 1770 222 37 0 0 chr1 155400862 155400889 -41794543 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1770 1278 34 0 0 chr1 155400889 155401036 -41794396 - B1_Mm SINE Alu 0 147 1 1 1770 385 104 26 0 chr1 155401196 155401273 -41794159 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1770 315 0 0 0 chr1 155401349 155401384 -41794048 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1770 366 23 0 0 chr1 155401384 155401426 -41794006 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1770 257 294 75 71 chr1 155401485 155401697 -41793735 + RLTR25A LTR ERVK 891 1103 0 1 1770 351 225 567 23 chr1 155401697 155401852 -41793580 - MTD LTR MaLR -147 272 25 1 1770 444 37 0 0 chr1 155401939 155401993 -41793439 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1770 358 181 167 12 chr1 155402021 155402105 -41793327 + Lx8 LINE L1 6211 6307 -1166 1 1770 374 258 103 0 chr1 155402162 155402317 -41793115 - L1MB8 LINE L1 -307 5871 5701 1 1770 294 95 0 0 chr1 155402383 155402425 -41793007 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1 1770 478 159 175 58 chr1 155402425 155402545 -41792887 - B1_Mur4 SINE Alu -6 144 11 1 1770 461 226 103 22 chr1 155402567 155402703 -41792729 - B1_Mur2 SINE Alu -1 148 2 1 1770 811 178 22 22 chr1 155402745 155402883 -41792549 - B1_Mur2 SINE Alu -10 139 2 1 1770 225 0 0 0 chr1 155402952 155402977 -41792455 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1770 400 211 173 0 chr1 155403077 155403181 -41792251 - B3 SINE B2 -94 122 1 1 1770 204 40 0 0 chr1 155403732 155403757 -41791675 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1770 1147 78 0 0 chr1 155403761 155403902 -41791530 - B1_Mus2 SINE Alu -5 142 2 1 1770 276 185 0 0 chr1 155404267 155404321 -41791111 + CT-rich Low_complexity Low_complexity 4 57 0 1 1770 909 230 25 5 chr1 155404372 155404573 -41790859 + B3 SINE B2 5 209 -7 1 1770 358 281 68 113 chr1 155404621 155404842 -41790590 + ID_B1 SINE B4 2 212 -12 1 1770 793 172 0 0 chr1 155404909 155405043 -41790389 - B1_Mus2 SINE Alu -13 134 1 1 1770 270 0 0 0 chr1 155405059 155405089 -41790343 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1770 449 219 86 0 chr1 155405163 155405268 -41790164 + RSINE1 SINE B4 14 127 -38 1 1770 480 18 0 0 chr1 155405280 155405337 -41790095 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1770 927 26 0 0 chr1 155406656 155406770 -41788662 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 1 1770 842 153 8 0 chr1 155406773 155406904 -41788528 - B1_Mus2 SINE Alu -13 134 3 1 1770 279 0 0 0 chr1 155408800 155408831 -41786601 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1770 547 349 65 25 chr1 155408834 155408913 -41786519 - B4A SINE B4 -2 290 209 1 1770 974 223 5 23 chr1 155408913 155409133 -41786299 - B3 SINE B2 0 216 1 1 1770 547 349 65 25 chr1 155409133 155409332 -41786100 - B4A SINE B4 -84 208 1 1 1770 702 237 110 5 chr1 155409395 155409586 -41785846 - B3 SINE B2 -5 211 1 1 1770 1076 139 44 6 chr1 155409595 155409776 -41785656 - B2_Mm2 SINE B2 -7 188 1 1 1770 458 218 11 0 chr1 155409801 155409888 -41785544 - B1_Mur2 SINE Alu -56 93 6 1 1770 237 302 79 34 chr1 155410156 155410250 -41785182 + L1M5 LINE L1 5607 5707 -417 1 1770 683 178 53 23 chr1 155410250 155410382 -41785050 - B1_Mur3 SINE Alu -13 136 1 1 1770 237 302 79 34 chr1 155410382 155410465 -41784967 + L1M5 LINE L1 5708 5792 -332 1 1770 573 272 47 7 chr1 155410518 155410666 -41784766 + ID_B1 SINE B4 24 177 -47 1 1770 198 171 0 0 chr1 155410874 155410915 -41784517 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1770 821 216 86 15 chr1 155410919 155411116 -41784316 - B3 SINE B2 -5 211 1 1 1770 198 0 0 0 chr1 155411168 155411190 -41784242 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 1770 21 0 0 0 chr1 155411505 155411526 -41783906 + AT_rich Low_complexity Low_complexity 1 21 0 1 1770 258 216 0 0 chr1 155412371 155412445 -41782987 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1770 278 270 164 21 chr1 155412450 155412484 -41782948 - RSINE1 SINE B4 -3 162 125 1 1770 1077 96 0 0 chr1 155412484 155412662 -41782770 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1770 278 270 164 21 chr1 155412662 155412767 -41782665 - RSINE1 SINE B4 -41 124 3 1 1770 25 51 0 0 chr1 155412790 155412829 -41782603 + AT_rich Low_complexity Low_complexity 1 39 0 1 1770 1055 235 49 61 chr1 155413449 155413776 -41781656 + ORR1E LTR MaLR 3 325 -34 1 1770 288 104 0 0 chr1 155413776 155413824 -41781608 + ORR1B1 LTR MaLR 1 48 -346 1 1770 255 363 44 54 chr1 155414037 155414241 -41781191 - MLT1N2 LTR MaLR -359 203 2 1 1770 845 82 22 29 chr1 155414354 155414492 -41780940 - B1_Mur3 SINE Alu -2 147 11 1 1770 419 211 30 75 chr1 155414383 155414516 -41780916 - MT2B LTR ERVL -323 278 152 1 1770 269 317 10 24 chr1 155415562 155415674 -41779758 - MER63A DNA AcHobo -69 141 33 1 1770 273 229 0 194 chr1 155415890 155415993 -41779439 - RSINE1 SINE B4 0 165 83 1 1770 443 296 48 27 chr1 155416044 155416190 -41779242 - B3 SINE B2 -63 153 5 1 1770 211 220 0 0 chr1 155416381 155416431 -41779001 + T-rich Low_complexity Low_complexity 1 50 0 1 1770 8154 49 4 5 chr1 155416434 155417641 -41777791 - L1Md_F2 LINE L1 0 6582 5377 1 1770 302 306 53 18 chr1 155417884 155417997 -41777435 - PB1D10 SINE Alu 0 117 1 1 1770 183 42 0 0 chr1 155418246 155418270 -41777162 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1770 1008 246 52 38 chr1 155418343 155418630 -41776802 - B4A SINE B4 0 292 2 1 1770 189 175 0 0 chr1 155418632 155418672 -41776760 + CT-rich Low_complexity Low_complexity 3 42 0 1 1770 525 279 135 15 chr1 155418677 155418877 -41776555 - ID_B1 SINE B4 0 224 1 1 1770 217 233 41 82 chr1 155419508 155419606 -41775826 - L2a LINE L2 -348 3078 2985 1 1770 254 263 39 13 chr1 155420212 155420289 -41775143 - MIRb SINE MIR -26 242 164 1 1770 223 196 19 56 chr1 155420788 155420842 -41774590 + RSINE1 SINE B4 44 95 -70 1 1770 297 275 10 52 chr1 155420836 155420932 -41774500 + B4A SINE B4 201 292 0 1 1770 203 301 21 31 chr1 155420945 155421041 -41774391 + (CATA)n Simple_repeat Simple_repeat 2 96 0 1 1770 940 195 47 33 chr1 155421055 155421267 -41774165 + B3 SINE B2 2 216 0 1 1770 283 189 19 0 chr1 155421308 155421361 -41774071 + ID_B1 SINE B4 161 214 -10 1 1770 1258 113 0 26 chr1 155421610 155421801 -41773631 + B2_Mm2 SINE B2 1 186 -9 1 1770 684 0 0 0 chr1 155422521 155422597 -41772835 + (TTCC)n Simple_repeat Simple_repeat 4 79 0 1 1770 531 235 0 0 chr1 155423197 155423316 -41772116 - B3A SINE B2 -78 120 2 1 1770 364 246 269 23 chr1 155424667 155424838 -41770594 + B3 SINE B2 2 214 -2 1 1770 798 184 0 0 chr1 155425432 155425611 -41769821 + GA-rich Low_complexity Low_complexity 2 180 0 1 1770 362 90 30 0 chr1 155426177 155426244 -41769188 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 1 1770 509 320 64 0 chr1 155426252 155426471 -41768961 + MER2 DNA MER2_type 17 249 -96 1 1770 650 242 149 18 chr1 155426648 155426930 -41768502 - L1MC4 LINE L1 -267 7775 7457 1 1770 459 0 0 0 chr1 155427264 155427315 -41768117 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1770 3363 41 0 5 chr1 155427323 155427719 -41767713 - MTA_Mm LTR MaLR 0 396 3 1 1770 261 83 0 0 chr1 155427734 155427770 -41767662 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1770 486 130 15 30 chr1 155427787 155427922 -41767510 + (TG)n Simple_repeat Simple_repeat 1 133 0 1 1770 402 254 40 107 chr1 155427922 155428072 -41767360 - RSINE1 SINE B4 0 165 26 1 1770 430 238 99 60 chr1 155428116 155428270 -41767162 - B3 SINE B2 -37 161 1 1 1770 378 329 59 31 chr1 155428403 155428723 -41766709 - Charlie18a DNA MER1_type -8 334 6 1 1770 798 109 0 0 chr1 155429166 155429285 -41766147 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 1 1770 1289 47 58 12 chr1 155429286 155429457 -41765975 - B2_Mm2 SINE B2 -15 180 2 1 1770 588 84 0 0 chr1 155429504 155429587 -41765845 + (TTTA)n Simple_repeat Simple_repeat 3 85 0 1 1770 1156 83 0 0 chr1 155429587 155429744 -41765688 - B2_Mm2 SINE B2 -36 159 3 1 1770 326 284 81 58 chr1 155429771 155430029 -41765403 - Charlie4a DNA MER1_type -179 329 66 1 1770 1019 180 10 16 chr1 155430132 155430324 -41765108 + B3 SINE B2 1 191 -25 1 1770 1949 77 48 39 chr1 155431007 155431316 -41764116 - Lx LINE L1 -1 6653 6342 1 1770 323 231 79 79 chr1 155431823 155432025 -41763407 - ORSL DNA Tip100 -35 240 39 1 1770 229 300 0 82 chr1 155432810 155432908 -41762524 - MTEa LTR MaLR -287 92 3 1 1770 417 280 8 31 chr1 155433399 155433528 -41761904 - B1F2 SINE Alu -5 144 19 1 1770 553 220 52 84 chr1 155435776 155435930 -41759502 + B1_Mur4 SINE Alu 1 149 -1 1 1770 2876 154 36 58 chr1 155436134 155436720 -41758712 + RMER15 LTR ERVL 1 573 -2 1 1770 666 0 0 0 chr1 155437000 155437074 -41758358 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 1 1770 257 274 72 21 chr1 155437137 155437234 -41758198 + LTR31 LTR ERV1 518 619 0 1 1770 180 111 0 0 chr1 155437302 155437329 -41758103 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 1 1770 571 236 69 19 chr1 155437332 155437492 -41757940 - ID_B1 SINE B4 -4 220 53 1 1770 383 302 23 31 chr1 155437787 155437917 -41757515 + RMER10B LTR ERVL 269 397 -1 1 1770 246 255 0 0 chr1 155437919 155437970 -41757462 - B4 SINE B4 -241 51 1 1 1770 831 217 63 39 chr1 155438137 155438343 -41757089 - B3 SINE B2 0 216 6 1 1770 659 245 127 13 chr1 155438384 155438620 -41756812 - Lx8 LINE L1 -258 7215 6953 1 1770 374 109 0 30 chr1 155438626 155438692 -41756740 + (TATG)n Simple_repeat Simple_repeat 2 65 0 1 1770 830 242 0 0 chr1 155438710 155438867 -41756565 - Lx8 LINE L1 -537 6936 6780 1 1770 437 254 69 38 chr1 155438867 155438998 -41756434 + B1_Mur1 SINE Alu 2 136 -13 1 1770 709 201 43 7 chr1 155439001 155439141 -41756291 - B1_Mus1 SINE Alu -1 147 3 1 1770 225 292 0 0 chr1 155439154 155439202 -41756230 + polypurine Low_complexity Low_complexity 4 51 0 1 1770 426 185 74 0 chr1 155439220 155439301 -41756131 - Lx8 LINE L1 -703 6770 6684 1 1770 46 45 0 0 chr1 155439392 155439459 -41755973 + AT_rich Low_complexity Low_complexity 1 67 0 1 1770 1241 41 0 0 chr1 155439474 155439621 -41755811 - B1_Mus2 SINE Alu 0 147 1 1 1770 513 267 84 32 chr1 155439679 155439834 -41755598 - RSINE1 SINE B4 0 165 3 1 1770 1750 10 0 0 chr1 155439851 155440043 -41755389 - B2_Mm1a SINE B2 0 193 2 1 1770 1072 88 0 20 chr1 155440623 155440635 -41754797 + B1_Mus1 SINE Alu 2 13 -135 1 1770 414 0 0 0 chr1 155440635 155440681 -41754751 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1770 1072 88 0 20 chr1 155440681 155440818 -41754614 + B1_Mus1 SINE Alu 14 147 -1 1 1770 197 155 17 0 chr1 155440819 155440877 -41754555 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 1770 1303 138 142 0 chr1 155440894 155441162 -41754270 + ORR1C2 LTR MaLR 79 384 0 1 1770 822 197 14 0 chr1 155441250 155441397 -41754035 + B1_Mur3 SINE Alu 1 149 0 1 1770 383 302 121 7 chr1 155441499 155441581 -41753851 + RSINE1 SINE B4 1 81 -84 1 1770 468 0 0 0 chr1 155441581 155441633 -41753799 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1770 383 302 121 7 chr1 155441633 155441690 -41753742 + RSINE1 SINE B4 82 155 -10 1 1770 1954 121 21 15 chr1 155443262 155443589 -41751843 + ORR1A4 LTR MaLR 1 329 0 1 1770 277 246 0 0 chr1 155443770 155443835 -41751597 - L1MA4 LINE L1 -62 6238 6174 1 1770 659 258 53 51 chr1 155443983 155444425 -41751007 - RLTR15 LTR ERVK -37 322 10 1 1770 284 214 143 22 chr1 155445156 155445247 -41750185 + MIRc SINE MIR 38 139 -129 1 1770 559 245 68 156 chr1 155445516 155445753 -41749679 + ID_B1 SINE B4 1 216 -8 1 1770 330 26 0 0 chr1 155445955 155445994 -41749438 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1770 315 71 0 0 chr1 155446825 155446867 -41748565 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 1 1770 1966 201 23 3 chr1 155447211 155447601 -41747831 - MTD LTR MaLR -1 418 21 1 1770 192 217 0 0 chr1 155447759 155447805 -41747627 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1770 350 277 101 58 chr1 155447805 155447943 -41747489 - B1_Mur2 SINE Alu -3 146 3 1 1770 232 259 0 49 chr1 155448089 155448150 -41747282 - PB1D10 SINE Alu -23 94 37 1 1770 238 310 14 0 chr1 155448203 155448274 -41747158 - PB1D10 SINE Alu -44 73 2 1 1770 857 175 28 0 chr1 155448333 155448476 -41746956 - B1_Mus2 SINE Alu 0 147 1 1 1770 1139 48 14 7 chr1 155448702 155448848 -41746584 - B1_Mus1 SINE Alu 0 148 2 1 1770 642 62 0 0 chr1 155448857 155448954 -41746478 - L1_Mus3 LINE L1 0 6638 6542 1 1770 474 274 174 0 chr1 155449018 155449248 -41746184 - MLT1F2 LTR MaLR -2 558 289 1 1770 315 330 61 35 chr1 155449641 155449839 -41745593 + MLT1D LTR MaLR 275 477 -28 1 1770 257 338 7 101 chr1 155449863 155450011 -41745421 - MLT1F2 LTR MaLR -269 291 158 1 1770 470 17 17 0 chr1 155450422 155450481 -41744951 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1770 255 282 14 14 chr1 155450525 155450597 -41744835 - RSINE1 SINE B4 -91 74 3 1 1770 913 118 14 56 chr1 155450840 155450983 -41744449 - B1_Mur4 SINE Alu -13 137 1 1 221 579 203 8 25 chr1 155451363 155451484 -41743948 - RSINE1 SINE B4 -44 121 3 1 1771 814 118 0 0 chr1 155451877 155452004 -41743428 - B1_Mur3 SINE Alu -5 144 18 1 1771 334 204 42 92 chr1 155451899 155452018 -41743414 - MT2B LTR ERVL -323 278 166 1 1771 21 57 0 0 chr1 155452605 155452640 -41742792 + AT_rich Low_complexity Low_complexity 1 35 0 1 1771 299 234 25 25 chr1 155452640 155452719 -41742713 + Charlie5 DNA MER1_type 2546 2624 0 1 1771 1490 152 0 0 chr1 155452901 155453125 -41742307 - URR1B DNA MER1_type 0 225 2 1 1771 332 301 75 93 chr1 155453389 155453608 -41741824 + ORR1E LTR MaLR 40 256 -114 1 1771 249 108 0 0 chr1 155453705 155453742 -41741690 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1771 480 270 34 0 chr1 155454656 155454803 -41740629 - MER2 DNA MER2_type -56 289 138 1 1771 2097 158 72 3 chr1 155454803 155455190 -41740242 + MTC LTR MaLR 1 414 -7 1 1771 857 259 67 61 chr1 155455246 155455575 -41739857 + RMER13A LTR ERVK 1 331 -529 1 1771 992 193 5 22 chr1 155456197 155456382 -41739050 + B3 SINE B2 2 183 -33 1 1771 1121 73 0 0 chr1 155456401 155456538 -41738894 + B1_Mus2 SINE Alu 2 138 -9 1 1771 194 0 39 0 chr1 155456538 155456564 -41738868 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1771 560 40 0 13 chr1 155456610 155456686 -41738746 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1771 496 234 54 0 chr1 155456689 155456800 -41738632 - B1_Mur2 SINE Alu -32 117 1 1 1771 577 343 12 20 chr1 155456941 155457194 -41738238 - B4A SINE B4 -6 286 36 1 1771 225 0 0 0 chr1 155457308 155457333 -41738099 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1771 539 224 64 0 chr1 155457991 155458116 -41737316 + RSINE1 SINE B4 9 141 -24 1 1771 4687 117 76 7 chr1 155458413 155459101 -41736331 - RMER19A LTR ERVK 0 737 3 1 1771 2027 49 0 0 chr1 155459171 155459436 -41735996 - RLTR13B1 LTR ERVK -102 791 527 1 1771 6728 202 98 64 chr1 155459483 155460049 -41735383 + Lx9 LINE L1 5809 6418 -1226 1 1771 273 176 224 26 chr1 155460049 155460125 -41735307 - B3 SINE B2 0 216 126 1 1771 6728 202 98 64 chr1 155460125 155461259 -41734173 + Lx9 LINE L1 6419 7644 0 1 1771 896 211 85 5 chr1 155461294 155461458 -41733974 + B3 SINE B2 1 164 -52 1 1771 486 49 0 0 chr1 155461458 155461519 -41733913 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1771 896 211 85 5 chr1 155461519 155461554 -41733878 + B3 SINE B2 165 215 -1 1 1771 845 172 14 14 chr1 155462266 155462413 -41733019 + B1_Mur2 SINE Alu 3 149 0 1 1771 553 284 6 58 chr1 155462437 155462609 -41732823 + B3 SINE B2 37 199 -17 1 1771 244 80 19 57 chr1 155462609 155462662 -41732770 + GA-rich Low_complexity Low_complexity 1 51 0 1 1771 414 0 0 0 chr1 155462970 155463016 -41732416 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1771 285 183 40 40 chr1 155463097 155463171 -41732261 - RSINE1 SINE B4 -10 155 82 1 1771 244 204 93 0 chr1 155463644 155463698 -41731734 + L2a LINE L2 3361 3419 -7 1 1771 1390 77 16 16 chr1 155463725 155463911 -41731521 - B2_Mm2 SINE B2 -9 186 1 1 1771 305 333 0 102 chr1 155463946 155464073 -41731359 - RSINE1 SINE B4 -4 161 48 1 1771 189 147 0 0 chr1 155464174 155464208 -41731224 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1771 361 156 0 0 chr1 155464222 155464286 -41731146 + MTEa LTR MaLR 1 64 -315 1 1771 345 234 82 2 chr1 155464331 155464444 -41730988 + MTEa LTR MaLR 248 377 -2 1 1771 24 53 0 0 chr1 155465031 155465069 -41730363 + AT_rich Low_complexity Low_complexity 1 38 0 1 1771 6089 70 0 5 chr1 155465198 155465997 -41729435 - L1_Mm LINE L1 -991 4892 4098 1 1771 4674 65 44 3 chr1 155465997 155466594 -41728838 + L1Md_F2 LINE L1 5940 6560 -22 1 1771 22 0 0 0 chr1 155467859 155467881 -41727551 + AT_rich Low_complexity Low_complexity 1 22 0 1 1771 274 82 16 16 chr1 155467890 155467952 -41727480 + RLTR25B LTR ERVK 304 365 -663 1 1771 776 219 7 14 chr1 155468908 155469056 -41726376 - B1_Mur2 SINE Alu -2 147 1 1 1771 280 198 146 12 chr1 155469068 155469150 -41726282 - B1F1 SINE Alu -17 132 40 1 1771 266 122 0 0 chr1 155469186 155469227 -41726205 - B1_Mus2 SINE Alu -84 63 23 1 1771 2076 162 41 19 chr1 155469378 155469712 -41725720 + ORR1D1 LTR MaLR 1 339 -35 1 1771 198 0 0 0 chr1 155469712 155469734 -41725698 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1771 2076 162 41 19 chr1 155469734 155469765 -41725667 + ORR1D1 LTR MaLR 340 373 -1 1 1771 832 144 249 0 chr1 155469805 155469978 -41725454 + B3 SINE B2 1 216 0 1 1771 332 232 29 12 chr1 155470108 155470194 -41725238 - B1F SINE Alu -1 126 34 1 1771 239 341 53 38 chr1 155470936 155471154 -41724278 - L2a LINE L2 -36 3390 3208 1 1771 801 294 38 0 chr1 155471843 155472108 -41723324 - B4A SINE B4 -15 277 3 1 1771 250 293 103 35 chr1 155472381 155472526 -41722906 + MIRb SINE MIR 26 180 -88 1 1771 189 0 0 0 chr1 155473018 155473039 -41722393 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1 1771 251 265 103 0 chr1 155473276 155473393 -41722039 + L1ME4a LINE L1 5992 6120 -4 1 1771 747 102 7 42 chr1 155473528 155473671 -41721761 + GA-rich Low_complexity Low_complexity 2 139 0 1 1771 202 204 0 0 chr1 155474057 155474101 -41721331 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1771 25 31 0 0 chr1 155474139 155474171 -41721261 + AT_rich Low_complexity Low_complexity 1 32 0 1 1771 288 270 29 48 chr1 155474174 155474279 -41721153 - RSINE1 SINE B4 -35 130 28 1 1771 2400 81 12 3 chr1 155475032 155475355 -41720077 - ORR1A3 LTR MaLR 0 326 1 1 1771 1296 51 67 11 chr1 155475505 155475685 -41719747 - L1Md_F2 LINE L1 -627 5955 5766 1 1771 5433 49 1 9 chr1 155475685 155476358 -41719074 + L1Md_F2 LINE L1 5913 6580 -2 1 1771 499 220 48 48 chr1 155476358 155476391 -41719041 - L1PB4 LINE L1 -359 5797 5764 1 1771 441 278 43 9 chr1 155477361 155477477 -41717955 - ID_B1 SINE B4 -21 203 84 1 1771 510 241 0 9 chr1 155477862 155477971 -41717461 + PB1D10 SINE Alu 5 112 -5 1 1771 389 36 18 0 chr1 155477978 155478033 -41717399 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1771 612 298 163 50 chr1 155478225 155478673 -41716759 - LTR53 LTR ERVL -1 518 21 1 1771 861 132 13 46 chr1 155478673 155478824 -41716608 - B1_Mur3 SINE Alu -3 146 1 1 1771 477 0 0 0 chr1 155479227 155479280 -41716152 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1771 3554 245 150 50 chr1 155479280 155480509 -41714923 - Lx8 LINE L1 -35 7438 6088 1 1771 214 316 39 13 chr1 155480523 155480600 -41714832 - MIR SINE MIR -110 152 74 1 1771 1142 204 177 6 chr1 155482223 155482534 -41712898 - ORR1D2 LTR MaLR -4 366 3 1 1771 229 284 81 0 chr1 155483761 155483835 -41711597 + MLT2B2 LTR ERVL 1 80 -435 1 1771 733 266 53 94 chr1 155483839 155484158 -41711274 - ORR1E LTR MaLR -2 357 52 1 1771 311 286 29 39 chr1 155484310 155484412 -41711020 + PB1D9 SINE Alu 11 111 -9 1 1771 254 194 0 16 chr1 155484513 155484576 -41710856 + CT-rich Low_complexity Low_complexity 1 62 0 1 1771 368 288 36 0 chr1 155484620 155484731 -41710701 - PB1D10 SINE Alu -1 116 2 1 1771 1970 128 28 73 chr1 155484898 155485294 -41710138 + ORR1C1 LTR MaLR 1 378 0 1 1771 612 273 133 8 chr1 155486612 155486867 -41708565 + B4A SINE B4 2 288 -4 1 1771 663 123 0 0 chr1 155486891 155487013 -41708419 + (TC)n Simple_repeat Simple_repeat 1 122 0 1 1771 516 276 0 8 chr1 155487051 155487168 -41708264 + ID_B1 SINE B4 102 217 -7 1 1771 867 166 0 7 chr1 155487327 155487467 -41707965 - B1_Mur1 SINE Alu -9 140 2 1 1771 186 135 18 55 chr1 155488006 155488061 -41707371 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 1 1771 272 219 15 30 chr1 155490150 155490216 -41705216 - MIR SINE MIR -116 146 82 1 1771 213 39 0 0 chr1 155490219 155490245 -41705187 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1771 494 147 161 17 chr1 155490246 155490364 -41705068 - B1F SINE Alu -6 143 9 1 1771 231 146 0 0 chr1 155490815 155490856 -41704576 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 1 1771 390 42 0 0 chr1 155490929 155490977 -41704455 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1771 400 257 14 29 chr1 155491311 155491451 -41703981 - Lx8 LINE L1 0 7473 7336 1 1771 1360 277 68 14 chr1 155491483 155491933 -41703499 - Lx8 LINE L1 -51 7422 6931 1 1771 268 238 127 82 chr1 155492209 155492274 -41703158 + PB1D7 SINE Alu 3 80 -40 1 1771 2157 133 44 8 chr1 155492274 155492639 -41702793 + ORR1C1 LTR MaLR 1 378 0 1 1771 268 238 127 82 chr1 155492639 155492683 -41702749 + PB1D7 SINE Alu 81 117 -3 1 1771 180 0 0 0 chr1 155493032 155493052 -41702380 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1771 339 182 0 7 chr1 155493730 155493809 -41701623 - ORR1C2 LTR MaLR -14 370 278 1 1771 502 186 72 0 chr1 155493796 155493893 -41701539 + PB1D9 SINE Alu 9 112 -8 1 1771 189 0 0 0 chr1 155493894 155493915 -41701517 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1771 1409 173 51 72 chr1 155493921 155494167 -41701265 - ORR1C2 LTR MaLR -60 324 88 1 1771 2495 92 3 0 chr1 155494167 155494493 -41700939 - ORR1A2 LTR MaLR 0 327 1 1 1771 1409 173 51 72 chr1 155494493 155494577 -41700855 - ORR1C2 LTR MaLR -297 87 1 1 1771 225 0 0 0 chr1 155494653 155494678 -41700754 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1771 1261 40 0 0 chr1 155494678 155494826 -41700606 - B1_Mus1 SINE Alu 0 148 1 1 1771 244 272 36 24 chr1 155495071 155495154 -41700278 - MIRc SINE MIR -149 119 36 1 1771 228 343 129 46 chr1 155496002 155496219 -41699213 - MLT1D LTR MaLR -12 615 381 1 1771 459 267 37 22 chr1 155496221 155496317 -41699115 - RLTR20A2 LTR ERVK -16 562 454 1 1771 234 61 61 0 chr1 155496317 155496366 -41699066 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1771 459 272 0 17 chr1 155496366 155496403 -41699029 - RLTR20A2 LTR ERVK -92 486 450 1 1771 232 265 29 0 chr1 155496453 155496521 -41698911 - MLT1D LTR MaLR -185 320 251 1 1771 180 0 0 0 chr1 155496631 155496651 -41698781 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1771 667 232 6 19 chr1 155496672 155496830 -41698602 - B3A SINE B2 -42 156 1 1 1771 641 278 18 12 chr1 155496878 155497042 -41698390 + RSINE1 SINE B4 1 165 0 1 1771 370 268 49 14 chr1 155497093 155497237 -41698195 - MLT1D LTR MaLR -356 149 1 1 1771 673 255 38 0 chr1 155497444 155497601 -41697831 + ID_B1 SINE B4 42 204 -20 1 1771 429 215 36 45 chr1 155498374 155498486 -41696946 + B1_Mur2 SINE Alu 34 144 -5 1 1771 203 183 32 32 chr1 155500210 155500272 -41695160 + CT-rich Low_complexity Low_complexity 2 63 0 1 1771 1638 207 83 0 chr1 155501816 155502164 -41693268 - MTEa LTR MaLR -1 378 2 2 1771 219 379 16 24 chr1 155502484 155502611 -41692821 + MIRc SINE MIR 78 203 -65 3 1771 276 280 0 39 chr1 155502840 155502854 -41692578 - ID SINE ID -142 82 8 4 1771 283 226 0 31 chr1 155502854 155502918 -41692514 - ID4_ SINE ID -14 69 8 5 1771 375 41 0 0 chr1 155503607 155503656 -41691776 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1771 312 27 0 0 chr1 155503656 155503692 -41691740 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1771 216 0 0 0 chr1 155505168 155505192 -41690240 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1771 308 264 54 45 chr1 155505613 155505724 -41689708 - L1MC5 LINE L1 -313 7648 7537 9 1771 284 344 61 55 chr1 155506294 155506457 -41688975 - MIRb SINE MIR -25 243 80 1 1771 708 45 0 0 chr1 155506517 155506605 -41688827 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 1771 195 308 75 28 chr1 155506692 155506799 -41688633 - MIRc SINE MIR -37 231 120 1 1771 512 292 0 0 chr1 155507829 155507935 -41687497 + RSINE1 SINE B4 31 136 -29 1 1771 449 160 90 6 chr1 155509140 155509248 -41686184 - PB1D7 SINE Alu -20 127 24 1 1771 369 343 29 14 chr1 155509810 155509949 -41685483 + MIRb SINE MIR 124 264 -4 1 1771 224 329 38 17 chr1 155510302 155510455 -41684977 + MIRm SINE MIR 9 159 -103 1 1771 1494 63 0 21 chr1 155510487 155510681 -41684751 - B2_Mm2 SINE B2 -4 191 2 1 1771 246 302 35 70 chr1 155510726 155510739 -41684693 - B4A SINE B4 -179 113 4 1 1771 796 59 0 0 chr1 155510739 155510840 -41684592 - B2_Mm2 SINE B2 -91 104 4 1 1771 310 172 0 0 chr1 155510902 155510960 -41684472 - PB1D10 SINE Alu -28 89 32 2 1771 508 290 27 7 chr1 155511006 155511152 -41684280 + B1F SINE Alu 1 149 0 2 1771 1263 94 0 0 chr1 155511166 155511346 -41684086 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1771 477 0 0 0 chr1 155511346 155511399 -41684033 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 2 1771 310 296 0 12 chr1 155511689 155511771 -41683661 - MER5A DNA MER1_type -105 84 4 2 1771 221 0 35 0 chr1 155512112 155512141 -41683291 + (GGGTG)n Simple_repeat Simple_repeat 5 34 0 2 1771 803 214 6 18 chr1 155515422 155515734 -41679698 + CT-rich Low_complexity Low_complexity 1 308 0 2 1771 1239 94 0 0 chr1 155515750 155515930 -41679502 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 2 1771 609 14 0 0 chr1 155515930 155516000 -41679432 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 2 1771 535 280 13 45 chr1 155517022 155517179 -41678253 - MER58A DNA MER1_type -1 223 72 2 1771 209 294 146 10 chr1 155518450 155518553 -41676879 - MIRc SINE MIR -148 120 4 3 1771 230 346 24 12 chr1 155518633 155518715 -41676717 - ID SINE ID -141 83 1 3 1771 486 0 0 0 chr1 155519186 155519240 -41676192 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 3 1771 267 213 15 62 chr1 155519356 155519421 -41676011 + ID4_ SINE ID 2 63 -20 3 1771 527 256 0 119 chr1 155519422 155519573 -41675859 - ID_B1 SINE B4 -8 216 84 3 1771 231 167 0 0 chr1 155520387 155520429 -41675003 + (CAT)n Simple_repeat Simple_repeat 1 42 0 3 1771 539 269 136 199 chr1 155520588 155520704 -41674728 - B4A SINE B4 -6 286 215 3 1771 629 264 6 25 chr1 155520704 155520867 -41674565 - RSINE1 SINE B4 -1 164 5 3 1771 249 33 0 0 chr1 155520876 155520906 -41674526 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3 1771 539 269 136 199 chr1 155520906 155521081 -41674351 - B4A SINE B4 -78 214 4 3 1771 360 0 0 0 chr1 155522638 155522678 -41672754 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1771 215 170 21 0 chr1 155523329 155523376 -41672056 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1771 201 121 0 0 chr1 155523491 155523524 -41671908 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 4 1771 306 226 206 0 chr1 155523594 155523696 -41671736 - HAL1-3A_ME LINE L1 -453 2405 2283 4 1771 438 20 0 0 chr1 155523779 155523830 -41671602 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 4 1771 382 276 74 34 chr1 155524326 155524492 -41670940 + MER5A DNA MER1_type 10 178 0 4 1771 207 0 0 0 chr1 155524682 155524705 -41670727 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 4 1771 459 0 0 0 chr1 155524705 155524756 -41670676 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 4 1771 386 316 57 44 chr1 155524922 155525150 -41670282 + MIRb SINE MIR 38 268 0 4 1771 567 164 164 0 chr1 155525569 155525697 -41669735 - B1_Mur4 SINE Alu 0 150 2 4 1771 567 0 0 0 chr1 155525800 155525863 -41669569 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1771 297 308 107 49 chr1 155525903 155526128 -41669304 - MamRep434 DNA TcMar -184 242 5 5 1771 234 0 0 0 chr1 155526941 155526967 -41668465 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1771 200 34 0 33 chr1 155528066 155528096 -41667336 + (CCCCCA)n Simple_repeat Simple_repeat 3 31 0 5 1771 249 298 114 48 chr1 155528638 155528792 -41666640 - MIRc SINE MIR -18 250 85 5 1771 339 65 0 0 chr1 155528811 155528857 -41666575 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1771 357 232 136 54 chr1 155528905 155529069 -41666363 - B4A SINE B4 -39 253 10 5 1771 1070 194 24 0 chr1 155529804 155530015 -41665417 - B3 SINE B2 0 216 1 5 1771 186 374 12 35 chr1 155530033 155530119 -41665313 + MIRc SINE MIR 64 147 -121 5 1771 21 0 0 0 chr1 155530698 155530719 -41664713 + GC_rich Low_complexity Low_complexity 1 21 0 5 1771 215 254 34 0 chr1 155530975 155531034 -41664398 + CT-rich Low_complexity Low_complexity 4 64 0 5 1771 702 273 39 44 chr1 155531036 155531239 -41664193 - ID_B1 SINE B4 -21 203 2 6 1771 1081 24 24 24 chr1 155531683 155531852 -41663580 + (TTCTC)n Simple_repeat Simple_repeat 4 172 0 6 1771 481 331 0 16 chr1 155532373 155532496 -41662936 - MTE2a LTR MaLR -78 301 181 6 1771 333 263 40 121 chr1 155532959 155533006 -41662426 - CYRA11_Mm Unknown Y-chromosome -191 426 268 6 1771 708 182 32 0 chr1 155533006 155533132 -41662300 + URR1B DNA MER1_type 1 130 -95 6 1771 2070 220 126 16 chr1 155533134 155533565 -41661867 + RLTR20A2 LTR ERVK 1 482 -96 6 1771 366 23 0 0 chr1 155533565 155533608 -41661824 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1771 2070 220 126 16 chr1 155533608 155533693 -41661739 + RLTR20A2 LTR ERVK 483 574 -4 6 1771 648 104 10 0 chr1 155533712 155533808 -41661624 + URR1B DNA MER1_type 129 225 0 6 1771 692 222 7 40 chr1 155534110 155534260 -41661172 + B1F SINE Alu 5 149 0 6 1771 21 36 0 0 chr1 155534424 155534452 -41660980 + AT_rich Low_complexity Low_complexity 1 28 0 6 1771 769 181 173 16 chr1 155535326 155535511 -41659921 + B3 SINE B2 2 215 -1 6 1771 537 80 0 0 chr1 155535718 155535793 -41659639 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1771 513 177 0 12 chr1 155535856 155535936 -41659496 + RSINE1 SINE B4 3 81 -84 7 1771 376 270 42 89 chr1 155535936 155536047 -41659385 + B2_Mm1t SINE B2 2 183 -10 7 1771 370 274 104 43 chr1 155536198 155536362 -41659070 + B4A SINE B4 55 228 -64 7 1771 393 110 0 0 chr1 155536434 155536507 -41658925 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 7 1771 259 186 211 14 chr1 155536551 155536622 -41658810 + B1F1 SINE Alu 26 110 -39 7 1771 341 266 13 0 chr1 155536650 155536729 -41658703 + ID4 SINE ID 2 81 -2 7 1771 221 436 0 0 chr1 155537122 155537200 -41658232 + RSINE1 SINE B4 3 80 -85 7 1771 180 0 0 0 chr1 155537227 155537247 -41658185 + (TGG)n Simple_repeat Simple_repeat 1 20 0 7 1771 243 245 0 19 chr1 155537268 155537322 -41658110 + RSINE1 SINE B4 3 55 -110 7 1771 317 75 19 0 chr1 155537366 155537419 -41658013 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1771 22 0 0 0 chr1 155537437 155537459 -41657973 + AT_rich Low_complexity Low_complexity 1 22 0 8 1771 730 185 0 0 chr1 155538484 155538603 -41656829 + RSINE1 SINE B4 2 120 -45 8 1771 663 13 0 0 chr1 155538603 155538679 -41656753 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1771 243 358 89 0 chr1 155538774 155538897 -41656535 + MIRb SINE MIR 71 204 -64 8 1771 629 76 11 0 chr1 155539331 155539423 -41656009 + (TC)n Simple_repeat Simple_repeat 2 94 0 8 1771 313 75 38 0 chr1 155539431 155539484 -41655948 + (TCC)n Simple_repeat Simple_repeat 2 56 0 8 1771 678 230 14 7 chr1 155539487 155539627 -41655805 - B1_Mur3 SINE Alu -8 141 1 8 1771 318 26 0 0 chr1 155542349 155542388 -41653044 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1771 358 292 27 163 chr1 155543154 155543338 -41652094 + MER5B DNA MER1_type 1 159 -19 8 1771 202 158 0 0 chr1 155545009 155545047 -41650385 + MIRc SINE MIR 231 268 0 9 1771 236 349 63 92 chr1 155545508 155545650 -41649782 - LTR78 LTR ERV1 -305 999 862 9 1771 310 203 43 0 chr1 155546499 155546568 -41648864 - MLT1A0 LTR MaLR -3 362 291 9 1771 195 246 69 42 chr1 155546880 155546952 -41648480 + MIR SINE MIR 126 199 -63 9 1771 451 319 0 29 chr1 155547248 155547387 -41648045 + RSINE1 SINE B4 4 138 -27 9 1771 257 340 48 10 chr1 155547924 155548028 -41647404 + RSINE1 SINE B4 1 108 -57 9 1771 408 314 36 0 chr1 155548019 155548156 -41647276 - MLT1B LTR MaLR -30 360 219 9 1771 295 248 155 26 chr1 155548480 155548596 -41646836 - MLT1B LTR MaLR -215 175 45 9 1771 393 315 20 34 chr1 155548598 155548746 -41646686 - MIR SINE MIR -88 174 29 9 1771 185 197 58 116 chr1 155548876 155548945 -41646487 + L3 LINE CR1 2074 2138 -2351 9 1771 333 358 48 12 chr1 155549384 155549551 -41645881 + MIRb SINE MIR 91 263 -5 9 1771 486 0 0 0 chr1 155550507 155550561 -41644871 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1771 1092 104 164 10 chr1 155551860 155552055 -41643377 + URR1B DNA MER1_type 1 225 0 1 1771 265 347 0 10 chr1 155552811 155552907 -41642525 + MIRb SINE MIR 65 159 -109 1 1771 2197 142 12 0 chr1 155553086 155553409 -41642023 + ORR1A2 LTR MaLR 1 327 0 1 1771 577 129 59 0 chr1 155553411 155553512 -41641920 + ORR1A2-int LTR MaLR 3 109 -1683 1 1771 549 172 143 25 chr1 155553563 155553682 -41641750 - B1_Mur2 SINE Alu -3 146 14 1 1771 180 0 0 0 chr1 155554195 155554215 -41641217 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1771 1230 62 0 0 chr1 155554215 155554361 -41641071 + B1_Mus2 SINE Alu 2 147 0 1 1771 291 28 0 0 chr1 155554375 155554411 -41641021 + (CAAAC)n Simple_repeat Simple_repeat 4 39 0 1 1771 288 287 22 54 chr1 155555314 155555406 -41640026 - MTEa LTR MaLR -1 378 290 1 1771 1047 16 0 0 chr1 155555599 155555720 -41639712 + (GAA)n Simple_repeat Simple_repeat 1 121 0 1 1771 2022 142 20 107 chr1 155555794 155556196 -41639236 + ORR1B2 LTR MaLR 1 367 0 1 1771 238 327 0 75 chr1 155556197 155556303 -41639129 + MT2B LTR ERVL 159 256 -345 1 1771 391 288 17 17 chr1 155556219 155556339 -41639093 + ID_B1 SINE B4 96 215 -9 1 1771 394 266 47 39 chr1 155556222 155556351 -41639081 + B1F SINE Alu 18 147 -2 1 1771 344 252 0 9 chr1 155557589 155557697 -41637735 + GA-rich Low_complexity Low_complexity 4 110 0 1 1771 364 270 121 35 chr1 155557787 155558156 -41637276 + L1MA4 LINE L1 5027 5421 -752 1 1771 372 22 0 0 chr1 155558292 155558337 -41637095 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1771 727 291 42 44 chr1 155559065 155559578 -41635854 + L1MA4 LINE L1 5485 6012 -279 1 1771 2084 109 56 0 chr1 155560626 155560928 -41634504 + ORR1A2 LTR MaLR 1 319 -8 1 1771 9611 138 38 61 chr1 155560932 155562767 -41632665 + ORR1A2-int LTR MaLR 1 1792 0 1 1771 2493 92 6 0 chr1 155562767 155563092 -41632340 + ORR1A2 LTR MaLR 1 327 0 1 1771 201 195 0 0 chr1 155563127 155563168 -41632264 + GA-rich Low_complexity Low_complexity 2 42 0 1 1771 206 292 0 0 chr1 155563513 155563561 -41631871 - MIR SINE MIR -93 169 122 1 1771 333 293 120 0 chr1 155563575 155563708 -41631724 - LTR79 LTR ERVL -1 526 378 1 1771 1382 221 85 91 chr1 155564000 155564364 -41631068 + MTE2b LTR MaLR 18 379 0 1 1771 237 320 139 10 chr1 155564502 155564603 -41630829 - L2b LINE L2 -1 3374 3261 1 1771 773 247 36 26 chr1 155564685 155564880 -41630552 - B3A SINE B2 0 198 2 1 1771 232 307 171 0 chr1 155566120 155566208 -41629224 - B1F1 SINE Alu -41 108 6 1 1771 214 279 49 0 chr1 155566508 155566569 -41628863 - MIRb SINE MIR -43 225 162 1 1771 372 22 0 0 chr1 155566745 155566790 -41628642 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1771 653 189 14 0 chr1 155567137 155567285 -41628147 + (TATATG)n Simple_repeat Simple_repeat 3 152 0 1 1771 254 170 0 0 chr1 155567285 155567332 -41628100 + MER4B-int LTR ERV1 1150 1196 -5562 1 1771 612 282 65 14 chr1 155567343 155567620 -41627812 - B4A SINE B4 0 292 2 1 1771 241 240 5 0 chr1 155568000 155568052 -41627380 - B1_Mus2 SINE Alu -91 58 6 1 1771 396 103 0 0 chr1 155568052 155568110 -41627322 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1771 1368 202 103 86 chr1 155568161 155568638 -41626794 - RLTR31_Mm LTR ERVK 0 561 77 1 1771 339 294 65 0 chr1 155568594 155568686 -41626746 - B1F SINE Alu -51 98 1 1 1771 236 286 0 132 chr1 155568966 155569095 -41626337 - HAL1 LINE L1 -379 2128 2017 1 1771 311 323 29 51 chr1 155569269 155569406 -41626026 - HAL1 LINE L1 -720 1787 1654 1 1771 607 236 124 35 chr1 155569406 155569608 -41625824 - ID_B1 SINE B4 -1 223 4 1 1771 384 119 0 0 chr1 155569666 155569725 -41625707 + (CAGC)n Simple_repeat Simple_repeat 4 62 0 1 1771 463 285 129 74 chr1 155569771 155570097 -41625335 - HAL1 LINE L1 -934 1573 1230 1 1771 427 247 86 13 chr1 155570156 155570308 -41625124 - RSINE1 SINE B4 0 165 3 1 1771 315 104 0 0 chr1 155571707 155571755 -41623677 + (TATG)n Simple_repeat Simple_repeat 3 50 0 1 1771 231 281 22 11 chr1 155572162 155572252 -41623180 - HAL1 LINE L1 -1605 902 812 1 1771 258 362 179 40 chr1 155572318 155572764 -41622668 + MamGypLTR1d LTR Gypsy 261 768 -45 1 1771 567 29 0 0 chr1 155573091 155573160 -41622272 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1771 659 125 0 63 chr1 155573188 155573214 -41622218 - B1F2 SINE Alu -9 140 120 1 1771 1836 104 168 0 chr1 155573214 155573494 -41621938 - ORR1A2 LTR MaLR 0 327 1 1 1771 659 125 0 63 chr1 155573494 155573578 -41621854 - B1F2 SINE Alu -30 119 37 1 1771 977 212 65 9 chr1 155575094 155575308 -41620124 - MTC LTR MaLR 0 421 196 1 1771 1148 49 0 0 chr1 155575316 155575458 -41619974 - B1_Mm SINE Alu 0 147 6 1 1771 1123 166 19 24 chr1 155575457 155575667 -41619765 - MTC LTR MaLR -212 209 1 1 1771 310 303 18 18 chr1 155575944 155576055 -41619377 + PB1D10 SINE Alu 1 111 -6 1 1771 431 261 189 92 chr1 155576061 155576310 -41619122 + B4 SINE B4 2 274 -18 1 1771 198 0 0 0 chr1 155576329 155576351 -41619081 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1771 204 40 0 0 chr1 155576353 155576378 -41619054 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1 1771 460 329 95 34 chr1 155576494 155576821 -41618611 + MLT1N2 LTR MaLR 169 515 -47 1 1771 223 308 166 34 chr1 155577058 155577233 -41618199 + MIRb SINE MIR 31 228 -40 1 1771 1074 124 0 0 chr1 155577312 155577557 -41617875 + (CA)n Simple_repeat Simple_repeat 1 245 0 1 1771 290 211 85 32 chr1 155578397 155578507 -41616925 - MIR SINE MIR -107 155 41 1 1771 581 321 54 54 chr1 155579003 155579283 -41616149 + B4 SINE B4 2 281 -11 1 1771 228 35 0 0 chr1 155579301 155579330 -41616102 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1771 261 0 0 0 chr1 155579330 155579358 -41616074 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1771 258 262 98 0 chr1 155579359 155579420 -41616012 - ID_B1 SINE B4 -59 165 99 1 1771 207 241 87 13 chr1 155580162 155580256 -41615176 + MIR SINE MIR 104 208 -60 1 1771 231 88 0 0 chr1 155581418 155581452 -41613980 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 1 1772 213 304 14 0 chr1 155583405 155583474 -41611958 + GA-rich Low_complexity Low_complexity 93 162 0 1 1772 756 258 24 91 chr1 155583717 155583772 -41611660 - B4A SINE B4 -57 235 191 1 1772 248 0 0 30 chr1 155583772 155583805 -41611627 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1772 756 258 24 91 chr1 155583805 155584001 -41611431 - B4A SINE B4 -102 190 1 1 1772 201 26 79 0 chr1 155584190 155584228 -41611204 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1772 1412 113 16 36 chr1 155585531 155585779 -41609653 + RMER10B LTR ERVL 1 243 -155 1 1772 222 276 17 0 chr1 155585839 155585897 -41609535 + CT-rich Low_complexity Low_complexity 1 59 0 1 1772 188 289 0 0 chr1 155586056 155586094 -41609338 - MIR SINE MIR -28 234 197 1 1772 558 0 0 0 chr1 155587177 155587239 -41608193 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1772 246 85 51 0 chr1 155589627 155589686 -41605746 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1 1772 503 176 133 133 chr1 155590364 155590567 -41604865 + B3 SINE B2 1 203 -13 1 1772 195 184 0 0 chr1 155590583 155590621 -41604811 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1772 1186 55 14 0 chr1 155592958 155593104 -41602328 + B1_Mur4 SINE Alu 1 148 -2 1 1772 636 256 6 42 chr1 155593570 155593737 -41601695 - RSINE1 SINE B4 -1 164 4 1 1772 497 249 159 6 chr1 155594110 155594280 -41601152 - B3A SINE B2 0 198 3 1 1772 344 319 41 14 chr1 155594739 155594885 -41600547 - MTEa LTR MaLR -229 150 1 1 1772 264 364 13 0 chr1 155595233 155595310 -41600122 - MIR SINE MIR -21 241 164 1 1772 222 262 0 120 chr1 155596014 155596131 -41599301 + L4 LINE RTE 1927 2029 0 1 1772 489 304 96 39 chr1 155596437 155596718 -41598714 + MER90 LTR ERV1 129 425 -150 1 1772 1016 222 102 23 chr1 155597060 155597329 -41598103 + MTD LTR MaLR 4 281 -119 1 1772 407 309 60 13 chr1 155597502 155597653 -41597779 + MIR SINE MIR 95 252 -10 1 1772 207 0 0 0 chr1 155597679 155597702 -41597730 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 1772 519 235 44 29 chr1 155597873 155598009 -41597423 + RSINE1 SINE B4 16 153 -12 1 1772 576 0 0 0 chr1 155598019 155598083 -41597349 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1772 2134 113 28 19 chr1 155598208 155598226 -41597206 + ORR1A2 LTR MaLR 1 15 -312 1 1772 3008 35 3 0 chr1 155598226 155598571 -41596861 + ORR1A1 LTR MaLR 1 346 0 1 1772 2134 113 28 19 chr1 155598571 155598876 -41596556 + ORR1A2 LTR MaLR 16 327 0 1 1772 270 0 0 0 chr1 155602961 155602991 -41592441 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1772 555 16 0 0 chr1 155602991 155603054 -41592378 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1772 29 28 0 0 chr1 155604112 155604148 -41591284 + AT_rich Low_complexity Low_complexity 1 36 0 1 1772 5721 98 99 10 chr1 155604148 155605020 -41590412 - L1_Mus2 LINE L1 0 6566 5618 1 1772 1439 143 9 4 chr1 155605746 155605971 -41589461 - URR1A DNA MER1_type 0 226 1 1 1772 1147 139 0 0 chr1 155606106 155606122 -41589310 - B2_Mm2 SINE B2 -23 172 157 1 1772 459 0 0 0 chr1 155606122 155606173 -41589259 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 1 1772 1147 139 0 0 chr1 155606173 155606328 -41589104 - B2_Mm2 SINE B2 -39 156 2 1 1772 254 50 0 24 chr1 155606331 155606372 -41589060 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 1 1772 1128 48 7 40 chr1 155606373 155606525 -41588907 - B1_Mus1 SINE Alu -1 147 1 1 1772 646 265 94 13 chr1 155607409 155607642 -41587790 - L1M2 LINE L1 -508 5789 5538 1 1772 604 167 56 0 chr1 155608154 155608262 -41587170 + B1_Mur1 SINE Alu 21 134 -15 1 1772 651 182 0 0 chr1 155608452 155608622 -41586810 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 1772 582 198 0 0 chr1 155608650 155608817 -41586615 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1772 210 286 78 0 chr1 155609042 155609119 -41586313 - MIRc SINE MIR -109 159 77 1 1772 276 30 0 0 chr1 155609667 155609700 -41585732 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1772 603 84 0 0 chr1 155609805 155609900 -41585532 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1772 315 348 6 35 chr1 155610074 155610244 -41585188 + MER20 DNA MER1_type 55 219 0 1 1772 327 312 85 31 chr1 155610646 155610775 -41584657 - MIRc SINE MIR -19 249 114 2 1772 1189 48 7 20 chr1 155611026 155611176 -41584256 + B1_Mus1 SINE Alu 1 148 0 2 1772 27 62 0 0 chr1 155611180 155611228 -41584204 + AT_rich Low_complexity Low_complexity 1 48 0 2 1772 419 177 144 12 chr1 155611947 155612107 -41583325 - Lx9 LINE L1 0 7644 7464 2 1772 2638 210 25 61 chr1 155612204 155612877 -41582555 + L1_Rod LINE L1 3600 4248 -1599 2 1772 300 304 12 153 chr1 155613070 155613110 -41582322 + ID SINE ID 3 38 -186 2 1772 2248 214 104 32 chr1 155613110 155613756 -41581676 - RLTR17 LTR ERVK 0 692 1 2 1772 387 340 61 77 chr1 155613756 155614017 -41581415 + B4A SINE B4 36 292 0 2 1772 633 47 0 0 chr1 155614025 155614110 -41581322 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1772 449 356 74 57 chr1 155614867 155615150 -41580282 - B4 SINE B4 -2 290 3 2 1772 485 319 74 61 chr1 155615197 155615420 -41580012 + MLT1A LTR MaLR 52 275 -99 2 1772 1064 82 0 0 chr1 155615420 155615555 -41579877 + B1_Mus2 SINE Alu 3 137 -10 2 1772 224 30 0 29 chr1 155615555 155615589 -41579843 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1772 485 319 74 61 chr1 155615589 155615675 -41579757 + MLT1A LTR MaLR 276 365 -9 2 1772 5719 98 28 27 chr1 155616210 155617162 -41578270 - RMER17B LTR ERVK -5 953 1 2 1772 220 340 115 26 chr1 155617758 155618220 -41577212 - L2 LINE L2 -568 2851 2349 2 1772 210 268 154 47 chr1 155618368 155618517 -41576915 - L2 LINE L2 -459 2960 2796 2 1772 1297 58 39 28 chr1 155618701 155618880 -41576552 + B2_Mm2 SINE B2 1 181 -14 2 1772 592 192 114 8 chr1 155619854 155619985 -41575447 + B1_Mur2 SINE Alu 5 149 0 2 1772 1166 75 0 0 chr1 155621760 155621907 -41573525 - B1_Mus1 SINE Alu 0 148 2 2 1772 228 234 0 0 chr1 155622038 155622085 -41573347 + T-rich Low_complexity Low_complexity 3 49 0 2 1772 409 294 84 16 chr1 155622239 155622429 -41573003 - Lx8 LINE L1 -2 7471 7269 2 1772 1455 156 0 0 chr1 155622719 155622944 -41572488 - URR1A DNA MER1_type -1 225 1 2 1772 225 268 210 7 chr1 155623699 155623842 -41571590 + L1MC LINE L1 4386 4557 -1589 2 1772 319 284 82 25 chr1 155624388 155624547 -41570885 - MER53 DNA hAT -1 192 25 2 1772 321 264 69 7 chr1 155624405 155624550 -41570882 + MER53 DNA hAT 29 182 -11 2 1772 266 0 0 29 chr1 155625184 155625219 -41570213 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1772 1309 192 136 42 chr1 155625219 155625785 -41569647 - BGLII_B LTR ERVK -20 533 1 2 1772 309 319 0 0 chr1 155626082 155626154 -41569278 - ID4_ SINE ID -11 72 1 2 1772 831 283 96 6 chr1 155626174 155626519 -41568913 - L1MA5 LINE L1 -22 6278 5903 2 1772 23 0 0 0 chr1 155626808 155626831 -41568601 + AT_rich Low_complexity Low_complexity 1 23 0 2 1772 182 347 0 0 chr1 155627086 155627135 -41568297 - L2c LINE L2 -38 3349 3301 2 1772 251 190 0 17 chr1 155627209 155627268 -41568164 + CT-rich Low_complexity Low_complexity 4 61 0 2 1772 1223 67 0 11 chr1 155628371 155628551 -41566881 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 2 1772 1255 248 14 14 chr1 155628940 155629226 -41566206 + B4A SINE B4 1 286 -6 2 1772 225 65 0 0 chr1 155629284 155629315 -41566117 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1772 3273 43 12 17 chr1 155629676 155630082 -41565350 + L1_Mus1 LINE L1 6164 6567 0 2 1772 1262 27 7 0 chr1 155630259 155630406 -41565026 - B1_Mus1 SINE Alu 0 148 1 2 1772 503 216 26 20 chr1 155630494 155630645 -41564787 + Lx2B LINE L1 6843 6994 -6 2 1772 389 162 14 0 chr1 155630645 155630719 -41564713 - ORR1C2 LTR MaLR -308 76 2 2 1772 805 173 0 28 chr1 155630937 155631080 -41564352 - B1_Mur1 SINE Alu -5 144 6 2 1772 816 219 54 11 chr1 155631093 155631278 -41564154 - B3A SINE B2 -1 197 5 2 1772 550 276 171 9 chr1 155632850 155633066 -41562366 + MTEb LTR MaLR 63 313 -66 2 1772 624 27 0 0 chr1 155633070 155633144 -41562288 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1772 927 57 0 0 chr1 155633144 155633268 -41562164 - B1_Mus1 SINE Alu -14 134 11 2 1772 503 234 6 67 chr1 155633268 155633311 -41562121 - ID_B1 SINE B4 -14 210 54 2 1772 1179 244 69 22 chr1 155633311 155633602 -41561830 - MTE2a LTR MaLR 0 379 68 2 1772 513 0 0 0 chr1 155633602 155633659 -41561773 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1772 1179 244 69 22 chr1 155633659 155633728 -41561704 - MTE2a LTR MaLR -312 67 2 2 1772 503 234 6 67 chr1 155633728 155633739 -41561693 - ID SINE ID -171 53 43 2 1772 423 298 80 74 chr1 155633798 155633961 -41561471 - RSINE1 SINE B4 0 165 2 2 1772 349 311 52 15 chr1 155633965 155634099 -41561333 - MTE-int LTR MaLR -31 1549 1411 2 1772 426 65 0 0 chr1 155634134 155634196 -41561236 + (CAA)n Simple_repeat Simple_repeat 1 62 0 2 1772 577 270 80 5 chr1 155634196 155634397 -41561035 + B3 SINE B2 1 216 0 2 1772 1527 301 90 54 chr1 155634369 155634450 -41560982 - MTE-int LTR MaLR -208 1372 1304 2 1772 472 127 195 78 chr1 155634450 155634578 -41560854 + B1_Mm SINE Alu 5 147 0 2 1772 1527 286 93 54 chr1 155634578 155635211 -41560221 - MTE-int LTR MaLR -277 1303 526 2 1772 432 287 83 43 chr1 155635234 155635587 -41559845 + BGLII_B LTR ERVK 7 424 -17 2 1772 741 296 0 24 chr1 155635601 155635809 -41559623 - MTE-int LTR MaLR -1183 397 195 2 1772 784 271 0 28 chr1 155635814 155636030 -41559402 - MTD-int LTR MaLR -687 683 474 2 1772 1467 175 123 42 chr1 155636015 155636378 -41559054 - MTD LTR MaLR -37 382 3 2 1772 1159 192 59 9 chr1 155636446 155636769 -41558663 - ORR1D1 LTR MaLR -7 371 2 2 1772 351 44 0 0 chr1 155636773 155636818 -41558614 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1772 213 39 0 0 chr1 155638242 155638268 -41557164 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1772 376 311 113 73 chr1 155638276 155638453 -41556979 - B3 SINE B2 -32 184 1 2 1772 491 259 22 147 chr1 155638702 155638933 -41556499 - RMER12 LTR ERVK 0 1322 1121 2 1772 1232 48 0 0 chr1 155639082 155639227 -41556205 + B1_Mus2 SINE Alu 3 147 0 2 1772 4069 205 87 22 chr1 155639237 155639554 -41555878 - RMER12 LTR ERVK -178 1144 769 2 1772 420 20 0 0 chr1 155639554 155639603 -41555829 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2 1772 4069 205 87 22 chr1 155639603 155640360 -41555072 - RMER12 LTR ERVK -554 768 2 2 1772 893 132 226 21 chr1 155641850 155641965 -41553467 - URR1A DNA MER1_type -2 224 113 2 1772 204 40 0 0 chr1 155641965 155641990 -41553442 + (TAATG)n Simple_repeat Simple_repeat 3 27 0 2 1772 893 132 226 21 chr1 155641990 155642060 -41553372 - URR1A DNA MER1_type -114 112 2 2 1772 802 180 25 17 chr1 155642158 155642623 -41552809 + CT-rich Low_complexity Low_complexity 1 468 0 2 1772 3285 51 2 5 chr1 155642957 155643354 -41552078 + MTA_Mm LTR MaLR 1 396 0 2 1772 3251 94 83 37 chr1 155643808 155643889 -41551543 + RMER2 LTR ERV1 1 81 -486 2 1772 3681 51 2 15 chr1 155643889 155644344 -41551088 + L1_Mus1 LINE L1 6112 6560 -7 2 1772 264 30 0 0 chr1 155644347 155644380 -41551052 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1772 3251 94 83 37 chr1 155644380 155644836 -41550596 + RMER2 LTR ERV1 82 567 0 2 1772 2013 149 53 13 chr1 155644992 155645386 -41550046 + RMER17C LTR ERVK 1 410 0 2 1772 211 261 110 33 chr1 155645552 155645643 -41549789 + PB1D10 SINE Alu 1 98 -19 2 1772 417 177 0 0 chr1 155645667 155645746 -41549686 + GA-rich Low_complexity Low_complexity 1 79 0 2 1772 272 133 17 0 chr1 155646295 155646355 -41549077 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1772 579 300 92 0 chr1 155646629 155646856 -41548576 - B4A SINE B4 -9 283 36 2 1772 238 280 26 26 chr1 155647778 155647855 -41547577 + L1M5 LINE L1 5497 5573 -551 2 1772 341 179 15 15 chr1 155648326 155648394 -41547038 - MIR SINE MIR -80 182 115 2 1772 500 301 91 29 chr1 155648951 155649160 -41546272 + Lx8 LINE L1 7250 7471 -2 2 1772 230 204 7 0 chr1 155650958 155651013 -41544419 + MIRm SINE MIR 116 172 -96 2 1772 268 243 18 0 chr1 155651465 155651576 -41543856 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 1772 540 68 0 0 chr1 155651868 155651941 -41543491 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 2 1772 2486 197 102 24 chr1 155652430 155653050 -41542382 + RLTR40 LTR ERVK 1 668 -149 2 1772 2276 227 25 40 chr1 155653050 155653682 -41541750 + RLTR22_Mur LTR ERVK 1 623 -1225 2 1772 640 190 39 52 chr1 155653702 155653857 -41541575 + RLTR40 LTR ERVK 659 811 -6 2 1772 504 227 23 23 chr1 155653886 155654017 -41541415 + B1F SINE Alu 18 148 -1 2 1772 302 125 125 0 chr1 155655117 155655173 -41540259 - PB1D9 SINE Alu -57 63 1 2 1772 818 283 74 40 chr1 155655430 155655599 -41539833 - L1M4b LINE L1 -2123 4883 4717 2 1772 1343 292 109 14 chr1 155655599 155656086 -41539346 + MT2A LTR ERVL 1 533 0 2 1772 818 283 74 40 chr1 155656086 155656388 -41539044 - L1M4b LINE L1 -2290 4716 4396 2 1772 486 233 132 0 chr1 155656439 155656568 -41538864 - B1_Mur2 SINE Alu 0 149 4 2 1772 326 300 41 98 chr1 155656955 155657199 -41538233 - L1M4b LINE L1 -5581 1753 1524 2 1772 395 298 184 6 chr1 155657732 155657911 -41537521 - B3 SINE B2 -5 211 1 2 1772 527 116 214 31 chr1 155658171 155658269 -41537163 + PB1D9 SINE Alu 5 120 0 2 1772 23 33 0 0 chr1 155658715 155658745 -41536687 + AT_rich Low_complexity Low_complexity 1 30 0 2 1772 1415 81 16 0 chr1 155660152 155660338 -41535094 + B2_Mm2 SINE B2 1 189 -6 2 1772 694 267 72 0 chr1 155660351 155660546 -41534886 + ID_B1 SINE B4 2 210 -14 2 1772 1133 52 0 0 chr1 155660858 155660994 -41534438 + B1_Mus1 SINE Alu 1 136 -12 2 1772 489 17 0 0 chr1 155660996 155661054 -41534378 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 2 1772 337 248 225 7 chr1 155661393 155661531 -41533901 + MTE2a LTR MaLR 206 373 -6 2 1772 1087 186 34 0 chr1 155662013 155662217 -41533215 - B3 SINE B2 -4 212 2 2 1772 2170 82 3 21 chr1 155662715 155663040 -41532392 - ORR1A2 LTR MaLR -8 319 1 2 1772 225 347 0 0 chr1 155663596 155663671 -41531761 + L1MC4 LINE L1 6488 6562 -1480 2 1772 300 350 95 60 chr1 155664044 155664296 -41531136 + LTR16A LTR ERVL 21 281 -170 2 1772 578 168 9 0 chr1 155665327 155665440 -41529992 + GA-rich Low_complexity Low_complexity 2 115 0 2 1772 1179 117 0 0 chr1 155665440 155665620 -41529812 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1772 754 168 8 0 chr1 155665639 155665764 -41529668 - B1_Mur4 SINE Alu -24 126 1 2 1772 4080 178 49 30 chr1 155665864 155666708 -41528724 + RMER13A LTR ERVK 1 860 0 3 1772 399 118 0 38 chr1 155668978 155669057 -41526375 - L1Md_F2 LINE L1 -2 6580 6505 3 1772 626 273 58 11 chr1 155669115 155669289 -41526143 - B3A SINE B2 -15 183 2 3 1772 237 33 0 0 chr1 155669671 155669701 -41525731 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 1772 217 317 0 0 chr1 155669941 155670001 -41525431 - MIRm SINE MIR -3 273 214 3 1772 734 193 21 21 chr1 155670205 155670543 -41524889 + CT-rich Low_complexity Low_complexity 1 338 0 3 1772 596 38 13 0 chr1 155670583 155670662 -41524770 + (GAAAA)n Simple_repeat Simple_repeat 2 81 0 3 1772 236 289 11 0 chr1 155670685 155670775 -41524657 - L2c LINE L2 -274 3113 3023 3 1772 2550 82 0 6 chr1 155670962 155671293 -41524139 + ORR1A4 LTR MaLR 1 329 0 3 1772 440 302 31 20 chr1 155671303 155671499 -41523933 + B4A SINE B4 9 206 -86 3 1772 587 246 90 27 chr1 155671553 155671731 -41523701 + MTE2a LTR MaLR 176 365 -14 3 1772 2337 96 16 0 chr1 155671731 155672053 -41523379 + ORR1A2 LTR MaLR 1 327 0 3 1772 532 230 79 0 chr1 155673809 155673935 -41521497 - ID_B1 SINE B4 -5 219 84 3 1772 223 288 119 8 chr1 155675372 155675498 -41519934 + L2a LINE L2 3287 3426 0 3 1772 207 100 0 0 chr1 155676102 155676132 -41519300 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1772 602 321 132 37 chr1 155676281 155676744 -41518688 - L2a LINE L2 -1 3425 2919 3 1772 526 277 65 32 chr1 155676889 155677228 -41518204 - L1MB3 LINE L1 -3 6180 5831 3 1772 492 259 192 48 chr1 155677225 155677537 -41517895 - L1M3 LINE L1 -873 5273 4917 3 1772 1572 90 148 4 chr1 155677553 155677831 -41517601 + ORR1A4 LTR MaLR 1 318 -11 3 1772 642 26 0 0 chr1 155677831 155677907 -41517525 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1772 1038 283 4 26 chr1 155677908 155678180 -41517252 - B4 SINE B4 -23 269 4 3 1772 1217 245 78 119 chr1 155678224 155678650 -41516782 - L1M3 LINE L1 -1267 4873 4420 3 1772 2523 67 12 21 chr1 155678650 155678987 -41516445 + L1_Mus1 LINE L1 6219 6552 -15 3 1772 1217 245 78 119 chr1 155678987 155679289 -41516143 - L1M3 LINE L1 -1721 4419 4175 3 1772 4968 87 8 0 chr1 155679288 155679946 -41515486 - L1_Mm LINE L1 -208 5675 5013 3 1772 936 117 297 16 chr1 155679971 155680240 -41515192 - ORR1A4 LTR MaLR -13 371 2 3 1772 235 221 74 49 chr1 155680245 155680326 -41515106 - L1M3 LINE L1 -1979 4161 4079 3 1772 779 278 63 0 chr1 155680334 155680604 -41514828 - L1M3 LINE L1 -2311 3829 3543 3 1772 461 260 53 31 chr1 155680652 155680878 -41514554 - L1M3 LINE L1 -3638 2502 2272 3 1772 2263 139 64 26 chr1 155680925 155681315 -41514117 + MTB_Mm LTR MaLR 1 405 -2 3 1772 1119 76 7 0 chr1 155681374 155681518 -41513914 - B1_Mus2 SINE Alu 0 147 3 3 1772 225 0 0 0 chr1 155681560 155681585 -41513847 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1772 603 74 0 0 chr1 155682078 155682159 -41513273 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1772 1174 179 269 10 chr1 155682821 155683126 -41512306 - ORR1C2 LTR MaLR 0 384 1 3 1772 234 0 0 0 chr1 155683510 155683536 -41511896 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1772 305 244 24 8 chr1 155683536 155683660 -41511772 + (TA)n Simple_repeat Simple_repeat 2 127 0 3 1772 295 336 27 0 chr1 155684188 155684298 -41511134 - MurSatRep1 Unknown Unknown -1400 737 625 3 1772 626 350 74 32 chr1 155684531 155684909 -41510523 - Lx8 LINE L1 -3 7470 7077 3 1772 32 0 0 0 chr1 155684958 155684990 -41510442 + AT_rich Low_complexity Low_complexity 1 32 0 3 1772 351 0 0 0 chr1 155685517 155685556 -41509876 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1772 207 0 0 0 chr1 155685638 155685661 -41509771 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1772 261 180 34 0 chr1 155685665 155685754 -41509678 + GA-rich Low_complexity Low_complexity 2 93 0 3 1772 306 289 103 0 chr1 155685864 155685961 -41509471 + PB1D10 SINE Alu 1 107 -10 3 1772 287 296 91 10 chr1 155686145 155686244 -41509188 + RLTR20B2 LTR ERVK 454 560 0 3 1772 2295 214 71 7 chr1 155686969 155687521 -41507911 + Lx9 LINE L1 7056 7642 -2 3 1772 611 191 50 33 chr1 155687528 155687689 -41507743 + ORR1D2 LTR MaLR 24 182 -192 3 1772 424 180 41 0 chr1 155687695 155687817 -41507615 + CT-rich Low_complexity Low_complexity 1 127 0 3 1772 907 172 19 49 chr1 155687817 155688036 -41507396 + ORR1D2 LTR MaLR 158 369 -5 3 1772 511 292 19 19 chr1 155688619 155688776 -41506656 + RSINE1 SINE B4 1 157 -8 3 1772 475 200 165 0 chr1 155689765 155689880 -41505552 + RSINE1 SINE B4 5 138 -27 3 1772 222 37 0 0 chr1 155689993 155690020 -41505412 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 3 1772 212 167 0 27 chr1 155690038 155690075 -41505357 - B1F SINE Alu -31 118 83 3 1772 889 145 0 0 chr1 155690088 155690219 -41505213 + B1_Mus1 SINE Alu 1 131 -17 3 1772 297 68 0 0 chr1 155690226 155690270 -41505162 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1772 389 232 0 0 chr1 155690301 155690370 -41505062 - B1F SINE Alu -78 71 3 3 1772 285 354 34 17 chr1 155690370 155690430 -41505002 - ID SINE ID -141 83 22 3 1772 869 245 15 0 chr1 155690597 155690797 -41504635 + ID_B1 SINE B4 10 212 -12 3 1772 237 33 0 0 chr1 155690800 155690830 -41504602 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1772 743 209 0 0 chr1 155690839 155690973 -41504459 + B1_Mus2 SINE Alu 1 134 -13 3 1772 180 0 0 0 chr1 155690975 155690995 -41504437 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1772 1271 163 22 22 chr1 155691573 155691799 -41503633 - URR1A DNA MER1_type 0 226 1 3 1772 286 254 91 0 chr1 155692072 155692147 -41503285 + B1_Mur2 SINE Alu 59 139 -10 3 1772 184 30 61 0 chr1 155692331 155692364 -41503068 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 3 1772 315 0 0 0 chr1 155693992 155694027 -41501405 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1772 353 173 31 26 chr1 155694369 155694465 -41500967 + B3A SINE B2 39 136 -59 3 1772 777 22 0 0 chr1 155694465 155694556 -41500876 + (TC)n Simple_repeat Simple_repeat 1 91 0 3 1772 317 221 77 65 chr1 155694556 155694614 -41500818 + B2_Mm2 SINE B2 137 195 0 3 1772 283 96 39 0 chr1 155694904 155694956 -41500476 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1772 408 195 13 0 chr1 155695022 155695099 -41500333 - ID4 SINE ID 0 83 6 3 1772 332 259 24 12 chr1 155695176 155695258 -41500174 - PB1D10 SINE Alu -28 89 7 3 1772 436 206 33 0 chr1 155695256 155695348 -41500084 - B1F2 SINE Alu -54 95 1 3 1772 3155 64 10 0 chr1 155695508 155695901 -41499531 - MTB LTR MaLR -2 398 2 3 1772 194 0 39 0 chr1 155696407 155696433 -41498999 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 3 1772 302 0 26 0 chr1 155696949 155696987 -41498445 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1772 719 297 57 46 chr1 155698620 155698902 -41496530 - MLT1A0 LTR MaLR 0 365 81 3 1772 315 130 111 0 chr1 155698896 155698950 -41496482 + B1_Mus2 SINE Alu 71 130 -17 3 1772 399 21 0 0 chr1 155698966 155699014 -41496418 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1772 594 316 58 34 chr1 155699297 155699592 -41495840 - Lx8 LINE L1 -18 7455 7154 3 1772 861 130 106 56 chr1 155699631 155699810 -41495622 - B2_Mm2 SINE B2 -7 188 1 3 1772 2164 96 90 40 chr1 155699910 155700256 -41495176 - RLTR8 LTR ERVK 0 365 3 3 1772 232 259 0 18 chr1 155700283 155700338 -41495094 + ID4_ SINE ID 2 55 -28 3 1772 3664 40 0 0 chr1 155701157 155701587 -41493845 - L1Md_F2 LINE L1 -462 6120 5691 3 1772 3525 68 8 31 chr1 155701587 155702072 -41493360 + L1Md_F2 LINE L1 6108 6581 -1 3 1772 522 0 0 0 chr1 155702334 155702392 -41493040 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1772 1557 167 98 3 chr1 155702392 155702710 -41492722 - RLTR20B2 LTR ERVK -133 427 80 3 1772 998 97 13 46 chr1 155704067 155704218 -41491214 - B1_Mur4 SINE Alu 0 150 5 3 1772 221 293 123 49 chr1 155704726 155704848 -41490584 - MIRc SINE MIR -21 247 117 3 1772 622 250 63 70 chr1 155704942 155705311 -41490121 + MLT1C LTR MaLR 1 382 -8 3 1772 723 254 34 0 chr1 155705538 155705640 -41489792 - ID_B1 SINE B4 -41 183 82 3 1772 519 17 0 0 chr1 155705640 155705700 -41489732 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1772 723 254 34 0 chr1 155705700 155705774 -41489658 - ID SINE ID -143 81 3 3 1772 26 0 0 0 chr1 155706029 155706055 -41489377 + AT_rich Low_complexity Low_complexity 1 26 0 3 1772 198 103 0 0 chr1 155706600 155706629 -41488803 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1772 729 238 38 43 chr1 155706930 155707141 -41488291 - B3 SINE B2 -5 211 2 3 1772 1378 52 46 0 chr1 155707891 155708065 -41487367 - B2_Mm2 SINE B2 -11 184 3 3 1772 596 184 0 0 chr1 155708292 155708390 -41487042 + B3A SINE B2 9 106 -92 3 1772 513 338 43 19 chr1 155708470 155708678 -41486754 - MER20B DNA MER1_type -553 230 18 3 1772 42 48 0 0 chr1 155708760 155708823 -41486609 + AT_rich Low_complexity Low_complexity 1 63 0 3 1772 631 197 0 16 chr1 155709114 155709125 -41486307 - B1_Mus2 SINE Alu 0 147 138 3 1772 537 121 0 0 chr1 155709125 155709208 -41486224 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 3 1772 631 197 0 16 chr1 155709208 155709320 -41486112 - B1_Mus2 SINE Alu -10 137 26 3 1772 269 326 76 0 chr1 155709545 155709637 -41485795 + PB1D10 SINE Alu 1 99 -18 3 1772 480 18 0 0 chr1 155709646 155709703 -41485729 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1772 2093 110 55 28 chr1 155710223 155710549 -41484883 + Lx4A LINE L1 6722 7056 -2 3 1772 217 27 81 0 chr1 155710852 155710889 -41484543 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1772 444 225 126 0 chr1 155711148 155711259 -41484173 - B4A SINE B4 -29 263 139 3 1772 214 274 93 23 chr1 155711275 155711361 -41484071 - B4A SINE B4 -200 92 1 3 1772 971 139 214 0 chr1 155711529 155711702 -41483730 + B3 SINE B2 1 210 -6 3 1772 324 0 0 0 chr1 155711743 155711779 -41483653 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1772 451 232 25 127 chr1 155711779 155711937 -41483495 - B1_Mur2 SINE Alu -2 147 6 3 1772 907 200 19 0 chr1 155712426 155712586 -41482846 + RSINE1 SINE B4 3 165 0 3 1772 1228 41 0 0 chr1 155712610 155712755 -41482677 + B1_Mus2 SINE Alu 2 146 -1 3 1772 1478 36 0 99 chr1 155712785 155712998 -41482434 + B2_Mm1t SINE B2 2 193 0 4 1772 23 0 0 0 chr1 155713117 155713140 -41482292 + AT_rich Low_complexity Low_complexity 1 23 0 4 1773 475 282 24 8 chr1 155714368 155714493 -41480939 - RSINE1 SINE B4 -36 129 3 4 1773 237 174 54 68 chr1 155714598 155714672 -41480760 + MER3 DNA MER1_type 136 208 -1 4 1773 2377 139 50 0 chr1 155714892 155715288 -41480144 + MTC LTR MaLR 6 421 0 4 1773 331 294 48 40 chr1 155715626 155715750 -41479682 - LTR33 LTR ERVL -358 157 33 4 1773 827 111 14 56 chr1 155716004 155716147 -41479285 - B1_Mur4 SINE Alu -13 137 1 4 1773 21 0 0 0 chr1 155717207 155717228 -41478204 + AT_rich Low_complexity Low_complexity 1 21 0 4 1773 697 107 9 0 chr1 155717229 155717341 -41478091 - Lx3C LINE L1 -2 6974 6862 4 1773 556 246 47 47 chr1 155717378 155717527 -41477905 + B1_Mur1 SINE Alu 1 149 0 4 1773 1448 78 10 40 chr1 155718211 155718412 -41477020 - B2_Mm2 SINE B2 0 195 1 4 1773 769 248 6 25 chr1 155718509 155718670 -41476762 + RSINE1 SINE B4 8 165 0 4 1773 248 327 11 0 chr1 155718680 155718787 -41476645 - MLT2B2 LTR ERVL -446 108 1 4 1773 605 226 8 0 chr1 155718886 155719010 -41476422 - B1_Mur1 SINE Alu -13 136 12 4 1773 320 216 17 121 chr1 155718908 155719024 -41476408 - MT2B LTR ERVL -337 264 161 4 1773 614 147 69 8 chr1 155719263 155719393 -41476039 - URR1B DNA MER1_type 0 225 88 4 1773 305 298 144 34 chr1 155719451 155719569 -41475863 + RSINE1 SINE B4 23 153 -12 4 1773 650 191 168 42 chr1 155719596 155719787 -41475645 + B3A SINE B2 2 216 0 4 1773 930 272 79 28 chr1 155719941 155720335 -41475097 + L1MA9 LINE L1 5794 6207 -105 4 1773 399 89 0 0 chr1 155720343 155720399 -41475033 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1773 486 0 0 0 chr1 155720426 155720480 -41474952 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 4 1773 256 323 50 40 chr1 155720493 155720593 -41474839 + PB1 SINE Alu 7 107 -20 4 1773 287 274 16 1 chr1 155721003 155721082 -41474350 + PB1D10 SINE Alu 40 120 -29 4 1773 1529 58 11 0 chr1 155723468 155723658 -41471774 - B2_Mm1t SINE B2 -1 192 1 4 1773 1188 169 27 18 chr1 155724331 155724554 -41470878 + URR1B DNA MER1_type 1 225 0 4 1773 217 128 0 41 chr1 155725149 155725198 -41470234 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 4 1773 688 305 147 31 chr1 155725470 155725825 -41469607 + Lx8 LINE L1 7076 7471 -2 4 1773 432 67 0 0 chr1 155725856 155725916 -41469516 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1773 268 280 12 62 chr1 155726093 155726173 -41469259 - ID SINE ID -147 77 2 4 1773 342 250 27 27 chr1 155726268 155726342 -41469090 - B3A SINE B2 -118 80 7 4 1773 271 333 70 28 chr1 155726370 155726512 -41468920 - B1F1 SINE Alu 0 149 2 4 1773 293 322 143 28 chr1 155726823 155727127 -41468305 + ORR1B1 LTR MaLR 33 374 0 4 1773 1863 178 79 33 chr1 155727502 155727591 -41467841 - RMER4A LTR ERVK 0 466 381 4 1773 3356 72 8 45 chr1 155727591 155728084 -41467348 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1773 1863 178 79 33 chr1 155728084 155728424 -41467008 - RMER4A LTR ERVK -86 380 17 4 1773 297 0 0 0 chr1 155728470 155728503 -41466929 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1773 228 195 119 83 chr1 155728609 155728693 -41466739 + MT2C_Mm LTR ERVL 209 295 -180 4 1773 246 259 0 0 chr1 155728636 155728694 -41466738 + ID_B1 SINE B4 156 213 -11 4 1773 629 329 67 6 chr1 155728686 155729001 -41466431 - ORR1E-int LTR MaLR -1245 335 2 4 1773 508 283 97 90 chr1 155729004 155729315 -41466117 - ORR1E LTR MaLR 0 359 47 4 1773 703 153 33 8 chr1 155729323 155729567 -41465865 + G-rich Low_complexity Low_complexity 1 250 0 4 1773 238 346 68 95 chr1 155729567 155729819 -41465613 - MLT1C LTR MaLR -215 252 8 4 1773 2598 124 80 37 chr1 155729830 155730290 -41465142 - RLTR11A LTR ERVK -1 527 48 4 1773 1185 78 72 0 chr1 155730289 155730456 -41464976 + B2_Mm2 SINE B2 8 186 -9 4 1773 3645 28 12 0 chr1 155730895 155731319 -41464113 + L1Md_T LINE L1 6153 6581 -1 4 1773 409 319 114 10 chr1 155731469 155731593 -41463839 + MLT1E1A LTR MaLR 15 151 -529 4 1773 678 249 85 15 chr1 155731593 155731793 -41463639 - ID_B1 SINE B4 -10 214 1 4 1773 409 319 114 10 chr1 155731793 155731861 -41463571 + MLT1E1A LTR MaLR 152 227 -453 4 1773 22 35 0 0 chr1 155732337 155732366 -41463066 + AT_rich Low_complexity Low_complexity 1 29 0 4 1773 1134 72 0 0 chr1 155732374 155732513 -41462919 + B1_Mm SINE Alu 1 139 -8 4 1773 3154 104 30 11 chr1 155732721 155733187 -41462245 + Lx LINE L1 6180 6654 0 4 1773 803 228 35 40 chr1 155733723 155733924 -41461508 + ID_B1 SINE B4 11 210 -14 4 1773 494 189 0 9 chr1 155734212 155734324 -41461108 + CT-rich Low_complexity Low_complexity 3 113 0 4 1773 333 82 0 0 chr1 155734325 155734374 -41461058 + (CCA)n Simple_repeat Simple_repeat 2 50 0 4 1773 723 142 19 0 chr1 155734380 155734486 -41460946 + B1_Mur1 SINE Alu 28 135 -14 4 1773 1520 63 26 0 chr1 155734656 155734845 -41460587 + B2_Mm2 SINE B2 2 195 0 4 1773 209 139 23 0 chr1 155735304 155735347 -41460085 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1773 4627 206 70 29 chr1 155735402 155736170 -41459262 + RMER12 LTR ERVK 1 767 -555 4 1773 576 42 0 0 chr1 155736170 155736241 -41459191 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 4 1773 4627 218 96 42 chr1 155736241 155736764 -41458668 + RMER12 LTR ERVK 768 1137 -185 4 1773 414 241 0 0 chr1 155736780 155736888 -41458544 + T-rich Low_complexity Low_complexity 1 108 0 4 1773 989 164 31 11 chr1 155736915 155737106 -41458326 - B2_Mm2 SINE B2 0 195 1 4 1773 871 243 57 0 chr1 155737116 155737326 -41458106 - B4 SINE B4 -69 223 2 4 1773 446 279 101 28 chr1 155738018 155738301 -41457131 - LTR33C LTR ERVL -345 318 2 4 1773 719 159 31 31 chr1 155740244 155740374 -41455058 - B1_Mur2 SINE Alu 0 149 20 4 1773 594 254 122 15 chr1 155740404 155740600 -41454832 + ID_B1 SINE B4 1 217 -7 4 1773 531 228 60 52 chr1 155742684 155742809 -41452623 + RSINE1 SINE B4 3 130 -35 4 1773 191 36 36 0 chr1 155742809 155742837 -41452595 + (TGG)n Simple_repeat Simple_repeat 2 30 0 4 1773 841 152 0 15 chr1 155742845 155742971 -41452461 + B1_Mus2 SINE Alu 16 147 0 4 1773 264 186 0 0 chr1 155743000 155743043 -41452389 + ID4_ SINE ID 2 44 -39 4 1773 718 275 60 55 chr1 155745063 155745298 -41450134 + B4A SINE B4 43 278 -14 4 1773 799 157 29 0 chr1 155746154 155746294 -41449138 - B1_Mur4 SINE Alu 0 150 7 4 1773 373 263 46 46 chr1 155746192 155746347 -41449085 - B4 SINE B4 -95 197 43 4 1773 484 201 25 89 chr1 155749019 155749177 -41446255 + B1_Mur2 SINE Alu 2 149 0 4 1773 543 242 93 8 chr1 155749341 155749470 -41445962 + B1_Mur2 SINE Alu 9 148 -1 4 1773 1074 101 0 26 chr1 155749532 155749684 -41445748 + B1_Mus1 SINE Alu 1 148 0 4 1773 501 188 29 10 chr1 155750555 155750657 -41444775 - URR1B DNA MER1_type 0 225 122 4 1773 340 271 95 58 chr1 155751355 155751492 -41443940 - B3 SINE B2 -3 213 72 4 1773 571 221 42 49 chr1 155751485 155751628 -41443804 + B3 SINE B2 21 162 -54 4 1773 466 243 18 101 chr1 155752151 155752320 -41443112 - RSINE1 SINE B4 0 165 11 4 1773 1172 75 0 0 chr1 155752788 155752934 -41442498 - B1_Mus2 SINE Alu 0 147 2 4 1773 512 181 104 9 chr1 155753811 155753917 -41441515 + RSINE1 SINE B4 8 123 -42 4 1773 24 67 0 0 chr1 155755916 155755961 -41439471 + AT_rich Low_complexity Low_complexity 1 45 0 4 1773 260 241 51 0 chr1 155757818 155757897 -41437535 - PB1D9 SINE Alu -2 118 36 4 1773 545 257 86 21 chr1 155758051 155758238 -41437194 + B3 SINE B2 5 203 -13 4 1773 273 304 40 97 chr1 155758816 155758857 -41436575 + PB1 SINE Alu 11 104 -23 4 1773 335 234 0 83 chr1 155758857 155758913 -41436519 + ID_B1 SINE B4 148 203 -21 4 1773 270 0 0 0 chr1 155758913 155758943 -41436489 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1773 1143 105 52 6 chr1 155758943 155759116 -41436316 - B2_Mm2 SINE B2 -13 182 2 4 1773 273 304 40 97 chr1 155759116 155759141 -41436291 + PB1 SINE Alu 105 126 -1 4 1773 3072 47 41 10 chr1 155759512 155759900 -41435532 - MTB LTR MaLR 0 400 1 4 1773 342 0 0 0 chr1 155760374 155760412 -41435020 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1773 1145 124 183 0 chr1 155760473 155760659 -41434773 - ORR1A2 LTR MaLR -8 319 100 4 1773 246 249 44 19 chr1 155760727 155760887 -41434545 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 4 1773 620 233 93 54 chr1 155760894 155761098 -41434334 + ID_B1 SINE B4 3 214 -10 4 1773 259 154 58 0 chr1 155761055 155761107 -41434325 + PB1D7 SINE Alu 65 119 -1 4 1773 3515 31 50 2 chr1 155762260 155762465 -41432967 - RLTR10C LTR ERVK 0 436 233 4 1773 396 0 0 0 chr1 155762465 155762509 -41432923 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1773 3515 31 50 2 chr1 155762509 155762719 -41432713 - RLTR10C LTR ERVK -204 232 2 4 1773 268 167 37 0 chr1 155762722 155762776 -41432656 - MLT1F2 LTR MaLR -7 553 498 4 1773 239 272 142 96 chr1 155763052 155763312 -41432120 + RMER10A LTR ERVL 152 423 -19 4 1773 1038 39 0 8 chr1 155763921 155764050 -41431382 + B1_Mus1 SINE Alu 19 146 -2 4 1773 207 0 0 0 chr1 155764050 155764073 -41431359 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1773 527 310 7 40 chr1 155764281 155764432 -41431000 + B1F SINE Alu 3 148 -1 4 1773 771 11 0 0 chr1 155764669 155764757 -41430675 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 4 1773 226 186 0 0 chr1 155764950 155764993 -41430439 + ID4_ SINE ID 1 43 -40 4 1773 482 270 10 10 chr1 155765234 155765335 -41430097 + ID_B1 SINE B4 22 122 -102 5 1773 438 103 0 0 chr1 155765351 155765429 -41430003 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1773 522 0 0 0 chr1 155765429 155765487 -41429945 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1773 217 183 33 0 chr1 155765540 155765600 -41429832 + GA-rich Low_complexity Low_complexity 1 62 0 5 1773 216 86 0 0 chr1 155765614 155765649 -41429783 + (ACTG)n Simple_repeat Simple_repeat 3 37 0 5 1773 367 169 0 0 chr1 155766623 155766682 -41428750 + B3 SINE B2 72 130 -86 5 1773 435 305 58 58 chr1 155766688 155766862 -41428570 + B2_Mm2 SINE B2 11 184 -11 5 1773 259 252 121 43 chr1 155766879 155766896 -41428536 + B4A SINE B4 70 95 -197 5 1773 549 139 78 10 chr1 155766896 155766998 -41428434 + B1_Mur4 SINE Alu 1 109 -41 5 1773 1194 62 0 0 chr1 155767669 155767814 -41427618 - B1_Mus2 SINE Alu -1 146 2 5 1773 211 191 0 0 chr1 155767848 155767890 -41427542 + CT-rich Low_complexity Low_complexity 2 43 0 5 1773 536 286 45 45 chr1 155767919 155768117 -41427315 + B3A SINE B2 1 198 0 5 1773 569 140 21 11 chr1 155768235 155768329 -41427103 - PB1D9 SINE Alu -1 119 25 5 1773 389 247 127 213 chr1 155768329 155768456 -41426976 - ID_B1 SINE B4 0 224 23 5 1773 232 241 19 0 chr1 155768409 155768463 -41426969 - ID4 SINE ID -15 68 14 5 1773 243 314 0 55 chr1 155768473 155768564 -41426868 - Tigger7 DNA MER2_type -2398 93 8 5 1773 273 258 42 12 chr1 155768567 155768732 -41426700 + (TA)n Simple_repeat Simple_repeat 2 171 0 5 1773 1488 204 95 28 chr1 155768806 155769195 -41426237 - MTD LTR MaLR -2 417 3 5 1773 200 188 42 0 chr1 155769195 155769243 -41426189 + A-rich Low_complexity Low_complexity 6 55 0 5 1773 468 51 0 0 chr1 155769244 155769303 -41426129 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1773 1178 75 0 0 chr1 155769326 155769473 -41425959 - B1_Mus2 SINE Alu 0 147 1 5 1773 241 180 0 74 chr1 155769581 155769635 -41425797 + MIRc SINE MIR 97 146 -122 5 1773 1004 99 50 0 chr1 155770487 155770628 -41424804 + B1_Mur4 SINE Alu 1 148 -2 5 1773 302 262 214 0 chr1 155770671 155770774 -41424658 + PB1 SINE Alu 1 125 -2 5 1773 505 285 109 7 chr1 155770820 155770958 -41424474 + ID_B1 SINE B4 68 219 -5 5 1773 239 296 0 80 chr1 155771019 155771107 -41424325 + ID4_ SINE ID 3 83 0 5 1773 443 136 25 0 chr1 155771172 155771253 -41424179 + CT-rich Low_complexity Low_complexity 3 85 0 5 1773 1351 6 0 38 chr1 155771253 155771438 -41423994 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1773 1301 116 50 31 chr1 155771442 155771664 -41423768 - URR1A DNA MER1_type 0 226 1 5 1773 499 256 68 107 chr1 155771857 155772063 -41423369 + MLT2B4 LTR ERVL 1 198 -358 5 1773 293 291 97 21 chr1 155772171 155772315 -41423117 + MLT2B4 LTR ERVL 195 349 -65 5 1773 785 124 155 0 chr1 155772542 155772671 -41422761 + B1_Mur4 SINE Alu 2 150 0 5 1773 552 15 0 0 chr1 155772732 155772797 -41422635 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1773 24 53 0 0 chr1 155772883 155772921 -41422511 + AT_rich Low_complexity Low_complexity 1 38 0 5 1773 553 296 9 84 chr1 155772943 155773157 -41422275 - B3A SINE B2 0 198 1 5 1773 240 35 0 0 chr1 155773162 155773191 -41422241 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 5 1773 427 129 0 0 chr1 155773193 155773255 -41422177 - B1_Mur2 SINE Alu -9 140 79 5 1773 555 304 51 39 chr1 155773274 155773452 -41421980 - B3 SINE B2 0 198 19 5 1773 3110 188 82 17 chr1 155773464 155774096 -41421336 + ORR1C2-int LTR MaLR 697 1369 -1 5 1773 1696 167 80 56 chr1 155774097 155774472 -41420960 + ORR1C2 LTR MaLR 1 384 0 5 1773 380 20 20 0 chr1 155774501 155774550 -41420882 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1773 25 31 0 0 chr1 155774598 155774630 -41420802 + AT_rich Low_complexity Low_complexity 1 32 0 5 1773 709 158 109 29 chr1 155774722 155774859 -41420573 - B1_Mur2 SINE Alu -1 148 1 5 1773 1202 90 11 0 chr1 155774904 155775081 -41420351 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1773 941 90 90 0 chr1 155775081 155775215 -41420217 - B1_Mus1 SINE Alu -2 146 1 5 1773 848 177 0 39 chr1 155775216 155775369 -41420063 - B1_Mur4 SINE Alu -2 148 2 5 1773 285 29 0 0 chr1 155775382 155775416 -41420016 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1773 1058 55 0 0 chr1 155775418 155775545 -41419887 - B1_Mus2 SINE Alu -17 130 4 5 1773 1037 106 12 0 chr1 155775557 155775718 -41419714 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 5 1773 410 58 14 0 chr1 155775726 155775795 -41419637 - Lx4A LINE L1 -10 7048 6979 5 1773 2387 114 29 0 chr1 155775795 155776136 -41419296 - Lx4A LINE L1 -295 6763 6413 5 1773 4531 62 41 0 chr1 155776257 155776821 -41418611 - LTRIS_Mus LTR ERV1 0 587 1 5 1773 944 133 7 20 chr1 155776873 155777019 -41418413 - B1_Mur3 SINE Alu 0 149 6 5 1773 239 248 47 123 chr1 155776885 155777055 -41418377 + YREP_Mm Unknown Unknown 186 342 -1470 5 1773 319 288 12 12 chr1 155777063 155777144 -41418288 - MamRep1879 DNA hAT? -106 110 30 5 1773 334 289 90 60 chr1 155777281 155777447 -41417985 - MIRc SINE MIR -84 184 14 5 1773 194 420 10 0 chr1 155777476 155777576 -41417856 + MIR3 SINE MIR 8 108 -100 5 1773 349 286 36 0 chr1 155777657 155777741 -41417691 + MIR3 SINE MIR 76 162 -46 5 1773 395 211 0 0 chr1 155777878 155777949 -41417483 - ID4_ SINE ID -11 72 2 5 1773 757 91 15 8 chr1 155778306 155778439 -41416993 + (CAAAA)n Simple_repeat Simple_repeat 4 137 0 5 1773 404 291 31 0 chr1 155778468 155778595 -41416837 - Lx7 LINE L1 -428 7268 7138 5 1773 623 121 0 10 chr1 155778944 155779044 -41416388 + B1_Mur4 SINE Alu 52 150 0 5 1773 216 0 0 0 chr1 155779255 155779279 -41416153 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 5 1773 752 92 118 0 chr1 155779281 155779400 -41416032 - B1_Mus1 SINE Alu -6 142 10 5 1773 1129 252 108 26 chr1 155779406 155779785 -41415647 + MTD LTR MaLR 5 414 -5 5 1773 1536 177 31 22 chr1 155779939 155780262 -41415170 + ORR1B2 LTR MaLR 1 326 -41 5 1773 921 136 220 6 chr1 155780266 155780443 -41414989 + B3 SINE B2 2 216 0 5 1773 332 137 0 0 chr1 155780471 155780522 -41414910 + ORR1B2 LTR MaLR 313 363 -4 5 1773 417 260 36 44 chr1 155780828 155780965 -41414467 - ID_B1 SINE B4 -8 216 81 5 1773 288 77 0 0 chr1 155780966 155781005 -41414427 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1773 608 0 0 14 chr1 155781240 155781313 -41414119 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1773 425 50 17 0 chr1 155781314 155781374 -41414058 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 5 1773 677 79 10 0 chr1 155781698 155781799 -41413633 + (TC)n Simple_repeat Simple_repeat 2 103 0 5 1773 245 229 0 0 chr1 155781827 155781875 -41413557 - ID4_ SINE ID -15 68 21 5 1773 233 184 0 0 chr1 155781929 155781967 -41413465 - B1_Mus2 SINE Alu -109 38 1 5 1773 1164 197 5 28 chr1 155782014 155782228 -41413204 + B3 SINE B2 2 210 -6 5 1773 502 274 104 0 chr1 155782234 155782398 -41413034 - B3A SINE B2 -16 182 2 5 1773 361 232 0 126 chr1 155782411 155782554 -41412878 - PB1 SINE Alu -2 125 1 5 1773 393 271 101 18 chr1 155782602 155782711 -41412721 - ID_B1 SINE B4 -16 208 91 5 1773 345 47 0 0 chr1 155782717 155782760 -41412672 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1773 628 229 27 14 chr1 155782775 155782921 -41412511 - B1_Mur1 SINE Alu 0 149 2 5 1773 428 243 37 0 chr1 155782923 155783030 -41412402 - PB1D10 SINE Alu -6 111 1 5 1773 275 276 53 46 chr1 155783049 155783201 -41412231 - ID_B1 SINE B4 -2 222 70 5 1773 375 286 8 82 chr1 155783519 155783641 -41411791 - PB1D7 SINE Alu -7 113 1 5 1773 418 259 8 79 chr1 155783670 155783796 -41411636 + RSINE1 SINE B4 48 164 -1 5 1773 662 234 0 0 chr1 155784078 155784215 -41411217 + ID_B1 SINE B4 88 224 0 5 1773 1893 172 0 61 chr1 155784292 155784670 -41410762 + ORR1C1 LTR MaLR 24 378 0 5 1773 659 200 69 0 chr1 155784960 155785090 -41410342 - B1_Mur1 SINE Alu 0 149 11 5 1773 370 309 36 0 chr1 155785105 155785215 -41410217 - PB1D10 SINE Alu -1 116 3 5 1773 574 284 20 40 chr1 155785318 155785516 -41409916 - RMER30 DNA MER1_type -1 201 8 5 1773 677 189 8 0 chr1 155785526 155785653 -41409779 + B1_Mur1 SINE Alu 9 136 -13 5 1773 23 0 0 0 chr1 155785773 155785796 -41409636 + AT_rich Low_complexity Low_complexity 1 23 0 5 1773 232 176 58 19 chr1 155785818 155785870 -41409562 - B3A SINE B2 -70 128 75 5 1773 2239 155 3 23 chr1 155785870 155786000 -41409432 + RLTR14 LTR ERV1 1 128 -254 5 1773 4248 39 0 2 chr1 155786000 155786494 -41408938 + MT2_Mm LTR ERVL 1 493 0 5 1773 2239 155 3 23 chr1 155786494 155786753 -41408679 + RLTR14 LTR ERV1 129 382 0 5 1773 398 189 0 91 chr1 155786753 155786835 -41408597 - B3 SINE B2 -143 73 1 5 1773 298 298 114 8 chr1 155787088 155787220 -41408212 - MER20 DNA MER1_type -47 172 27 5 1773 237 220 0 20 chr1 155787608 155787659 -41407773 + CT-rich Low_complexity Low_complexity 5 54 0 5 1773 772 254 14 27 chr1 155787664 155787883 -41407549 - ID_B1 SINE B4 -7 217 2 5 1773 243 220 220 0 chr1 155788112 155788171 -41407261 - RSINE1 SINE B4 -72 93 22 5 1773 409 264 25 68 chr1 155788384 155788502 -41406930 + B3A SINE B2 7 119 -79 5 1773 448 244 0 0 chr1 155788629 155788719 -41406713 + B1F2 SINE Alu 9 98 -51 5 1773 478 307 96 6 chr1 155788804 155788896 -41406536 + B3A SINE B2 2 102 -96 5 1773 4971 112 11 41 chr1 155788896 155789730 -41405702 + RMER17D2 LTR ERVK 1 809 0 5 1773 478 307 96 6 chr1 155789730 155789804 -41405628 + B3A SINE B2 103 182 -16 5 1773 1166 35 14 14 chr1 155789859 155790005 -41405427 - B1_Mm SINE Alu 0 147 2 5 1773 1496 144 7 22 chr1 155790113 155790383 -41405049 - ORR1A1 LTR MaLR -80 266 1 6 1773 410 280 9 9 chr1 155790429 155790537 -41404895 + PB1D10 SINE Alu 5 112 -5 6 1773 1090 75 0 0 chr1 155790550 155790684 -41404748 + B1_Mm SINE Alu 1 134 -13 6 1773 252 77 0 0 chr1 155790688 155790727 -41404705 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1773 910 129 1 8 chr1 155791017 155791165 -41404267 - B1_Mur4 SINE Alu -1 149 1 6 1773 870 230 5 63 chr1 155791187 155791372 -41404060 - ID_B1 SINE B4 -1 223 45 6 1773 1936 122 29 81 chr1 155791372 155791719 -41403713 + ORR1A4 LTR MaLR 1 329 0 6 1773 870 230 5 63 chr1 155791719 155791756 -41403676 - ID SINE ID -180 44 14 6 1773 288 274 137 0 chr1 155791969 155792086 -41403346 + ID_B1 SINE B4 87 219 -5 6 1773 344 167 65 7 chr1 155792086 155792225 -41403207 + (TA)n Simple_repeat Simple_repeat 2 148 0 6 1773 288 296 0 39 chr1 155792865 155792967 -41402465 + CT-rich Low_complexity Low_complexity 1 98 0 6 1773 922 144 35 29 chr1 155792974 155793146 -41402286 + Lx9 LINE L1 7345 7517 -127 6 1773 810 195 0 5 chr1 155793140 155793326 -41402106 + Lx9 LINE L1 7460 7644 0 6 1773 2500 98 3 0 chr1 155793391 155793717 -41401715 + ORR1A2 LTR MaLR 1 327 0 6 1773 233 291 0 0 chr1 155794606 155794661 -41400771 - ID4 SINE ID -5 78 24 6 1773 514 294 68 0 chr1 155794696 155794842 -41400590 + RSINE1 SINE B4 1 156 -9 6 1773 32 57 0 0 chr1 155794849 155794902 -41400530 + AT_rich Low_complexity Low_complexity 1 53 0 6 1773 405 0 0 0 chr1 155794902 155794947 -41400485 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 6 1773 255 253 40 0 chr1 155794950 155795025 -41400407 - ID_B1 SINE B4 -12 212 135 6 1773 618 318 79 34 chr1 155795108 155795375 -41400057 - MLT1C LTR MaLR -7 460 182 6 1773 297 0 0 0 chr1 155795385 155795418 -41400014 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 6 1773 506 302 0 0 chr1 155795421 155795540 -41399892 - B1_Mur1 SINE Alu -28 121 3 6 1773 280 220 24 35 chr1 155795541 155795626 -41399806 - MLT1C LTR MaLR -280 187 104 6 1773 388 312 22 45 chr1 155795981 155796115 -41399317 - RSINE1 SINE B4 -1 164 34 6 1773 2701 70 63 19 chr1 155796380 155796759 -41398673 + MTB LTR MaLR 5 400 0 6 1773 1198 68 0 0 chr1 155797308 155797455 -41397977 - B1_Mm SINE Alu 0 147 1 6 1773 21 0 0 0 chr1 155797456 155797477 -41397955 + AT_rich Low_complexity Low_complexity 1 21 0 6 1773 186 43 0 0 chr1 155797544 155797567 -41397865 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1773 644 249 78 11 chr1 155797582 155797761 -41397671 - B3 SINE B2 -25 191 1 6 1773 432 67 0 0 chr1 155797787 155797847 -41397585 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1773 954 285 73 106 chr1 155798012 155798644 -41396788 + RLTR18 LTR ERVK 6 616 0 6 1773 247 294 5 32 chr1 155798675 155798775 -41396657 + B1F1 SINE Alu 15 111 -6 6 1773 459 295 122 0 chr1 155798782 155798921 -41396511 + RSINE1 SINE B4 1 156 -9 6 1773 207 0 0 0 chr1 155799632 155799655 -41395777 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1773 606 93 0 0 chr1 155799655 155799740 -41395692 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1773 198 0 0 0 chr1 155799740 155799761 -41395671 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1773 505 293 23 29 chr1 155800847 155801019 -41394413 + MLT1A LTR MaLR 2 172 -202 6 1773 252 284 0 13 chr1 155801100 155801175 -41394257 + MLT1A LTR MaLR 290 363 -11 6 1773 1020 151 0 0 chr1 155803331 155803510 -41391922 + CT-rich Low_complexity Low_complexity 2 180 0 6 1773 1215 29 0 0 chr1 155803510 155803648 -41391784 - B1_Mm SINE Alu -9 138 1 6 1773 985 231 90 46 chr1 155803682 155804027 -41391405 - RMER10B LTR ERVL -20 378 19 6 1773 225 0 0 0 chr1 155804135 155804160 -41391272 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 1773 581 253 51 0 chr1 155804160 155804318 -41391114 + ID_B1 SINE B4 57 222 -2 6 1773 306 200 0 0 chr1 155804446 155804506 -41390926 - PB1D10 SINE Alu 0 117 58 6 1773 977 70 39 8 chr1 155804608 155804738 -41390694 + B1_Mus2 SINE Alu 1 134 -13 6 1773 455 0 0 18 chr1 155804738 155804794 -41390638 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 1773 257 0 30 0 chr1 155804813 155804846 -41390586 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1773 380 267 135 13 chr1 155805203 155805361 -41390071 + Lx9 LINE L1 7163 7466 -178 6 1773 396 40 0 0 chr1 155805361 155805411 -41390021 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1773 318 309 154 54 chr1 155805411 155805532 -41389900 + Lx9 LINE L1 7335 7470 -3 6 1773 308 212 78 117 chr1 155805585 155805713 -41389719 + PB1 SINE Alu 2 124 -3 6 1773 772 151 6 6 chr1 155805791 155805971 -41389461 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1773 382 182 11 11 chr1 155805971 155806060 -41389372 + (TATG)n Simple_repeat Simple_repeat 3 91 0 6 1773 531 96 19 19 chr1 155806063 155806169 -41389263 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 6 1773 836 202 18 0 chr1 155806203 155806366 -41389066 - Lx5 LINE L1 -401 6649 6484 6 1773 24 53 0 0 chr1 155806388 155806426 -41389006 + AT_rich Low_complexity Low_complexity 1 38 0 6 1773 369 271 32 56 chr1 155806524 155806541 -41388891 - ID_B1 SINE B4 -1 223 213 6 1773 423 0 0 0 chr1 155806541 155806588 -41388844 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1773 369 240 64 34 chr1 155806588 155806744 -41388688 - ID_B1 SINE B4 -12 212 2 6 1773 289 287 22 33 chr1 155806755 155806772 -41388660 - ID_B1 SINE B4 -55 169 82 6 1773 292 186 97 28 chr1 155806772 155806844 -41388588 - PB1D10 SINE Alu -40 77 1 6 1773 426 20 0 0 chr1 155806937 155806988 -41388444 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1773 441 0 0 0 chr1 155806988 155807036 -41388396 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1773 1420 82 6 0 chr1 155807227 155807410 -41388022 - B2_Mm1t SINE B2 -8 185 2 6 1773 181 236 73 0 chr1 155808007 155808062 -41387370 - L2a LINE L2 -100 3326 3268 6 1773 1233 180 5 5 chr1 155808126 155808338 -41387094 + B3 SINE B2 5 216 0 6 1773 189 0 0 0 chr1 155808393 155808414 -41387018 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1773 298 167 78 0 chr1 155808428 155808508 -41386924 + B1F SINE Alu 9 132 -17 6 1773 656 243 7 0 chr1 155808568 155808708 -41386724 - RSINE1 SINE B4 -22 143 3 6 1773 507 184 10 10 chr1 155808875 155808974 -41386458 + B1_Mur3 SINE Alu 3 101 -48 6 1773 308 226 104 45 chr1 155808974 155809008 -41386424 + ID_B1 SINE B4 84 224 0 6 1773 320 59 0 19 chr1 155809008 155809060 -41386372 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 6 1773 684 160 91 8 chr1 155809945 155810077 -41385355 + B1_Mur1 SINE Alu 3 145 -4 6 1773 1169 76 0 0 chr1 155810184 155810329 -41385103 - B1_Mus2 SINE Alu 0 147 3 6 1773 930 19 0 0 chr1 155811588 155811696 -41383736 + (GAAA)n Simple_repeat Simple_repeat 2 109 0 6 1773 306 310 51 42 chr1 155812085 155812097 -41383335 - B1F1 SINE Alu -3 146 28 6 1773 523 264 0 0 chr1 155812097 155812203 -41383229 - ID_B1 SINE B4 -10 214 109 6 1773 231 267 42 110 chr1 155812261 155812379 -41383053 + MER33 DNA MER1_type 31 140 -184 6 1773 647 186 8 17 chr1 155813393 155813513 -41381919 + PB1D9 SINE Alu 1 119 -1 6 1773 592 182 25 43 chr1 155814634 155814795 -41380637 + Lx2B LINE L1 6840 6997 -3 6 1773 271 105 0 0 chr1 155814884 155814922 -41380510 + B3 SINE B2 2 39 -177 6 1773 1232 54 0 0 chr1 155814924 155815071 -41380361 + B1_Mm SINE Alu 1 147 0 6 1773 243 0 0 0 chr1 155815071 155815098 -41380334 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1773 990 196 5 5 chr1 155815106 155815296 -41380136 + B3 SINE B2 27 216 0 6 1773 345 252 340 0 chr1 155815342 155815489 -41379943 - B3A SINE B2 -1 197 1 6 1773 274 293 46 79 chr1 155815548 155815700 -41379732 + B1F SINE Alu 1 147 -2 6 1773 189 0 0 0 chr1 155815731 155815752 -41379680 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 6 1773 3214 50 28 2 chr1 155816134 155816531 -41378901 + MTB_Mm LTR MaLR 1 407 0 6 1773 251 257 150 0 chr1 155817225 155817338 -41378094 + L1M4 LINE L1 5738 5867 -311 6 1773 228 94 100 86 chr1 155817662 155817720 -41377712 - B3 SINE B2 -2 214 153 6 1773 189 0 0 0 chr1 155817720 155817741 -41377691 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1773 228 94 100 86 chr1 155817741 155817752 -41377680 - B3 SINE B2 -64 152 144 6 1773 273 257 18 90 chr1 155817883 155817947 -41377485 + MIR SINE MIR 88 151 -111 6 1773 1384 88 0 20 chr1 155817947 155818145 -41377287 + B2_Mm2 SINE B2 2 195 0 6 1773 273 257 18 90 chr1 155818145 155818191 -41377241 + MIR SINE MIR 152 190 -72 6 1773 218 190 49 42 chr1 155818204 155818347 -41377085 + (TA)n Simple_repeat Simple_repeat 2 145 0 6 1773 2077 121 38 1 chr1 155818369 155818874 -41376558 - RLTR33 LTR ERVK -113 565 1 6 1773 843 190 0 7 chr1 155819240 155819383 -41376049 - B1_Mur2 SINE Alu -6 143 2 6 1773 598 259 7 7 chr1 155819616 155819760 -41375672 - RSINE1 SINE B4 -17 148 5 6 1773 240 86 0 0 chr1 155820389 155820424 -41375008 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1773 290 268 8 125 chr1 155820528 155820656 -41374776 + PB1 SINE Alu 11 123 -4 6 1773 859 226 55 25 chr1 155820743 155820943 -41374489 - B3 SINE B2 -8 208 3 6 1773 273 109 0 0 chr1 155820951 155820997 -41374435 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1773 230 200 18 18 chr1 155821064 155821120 -41374312 - L1M5 LINE L1 -939 5207 5152 6 1773 281 246 0 68 chr1 155822336 155822354 -41373078 - B4 SINE B4 -199 93 79 6 1773 2190 138 43 19 chr1 155822354 155822723 -41372709 + ORR1C1 LTR MaLR 1 378 0 6 1773 281 246 0 68 chr1 155822723 155822778 -41372654 - B4 SINE B4 -214 78 25 6 1773 243 88 0 0 chr1 155822790 155822824 -41372608 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1773 656 243 401 26 chr1 155822845 155823111 -41372321 - ORR1D2 LTR MaLR 0 370 5 6 1773 373 169 2 0 chr1 155823110 155823180 -41372252 - PB1D9 SINE Alu -69 80 10 7 1773 217 49 0 89 chr1 155823191 155823236 -41372196 + (TCC)n Simple_repeat Simple_repeat 3 43 0 7 1773 1167 207 0 0 chr1 155823244 155823447 -41371985 - B3 SINE B2 -13 203 1 7 1773 960 173 0 0 chr1 155823512 155823691 -41371741 + CT-rich Low_complexity Low_complexity 2 180 0 7 1773 407 55 0 0 chr1 155823713 155823768 -41371664 - B1_Mm SINE Alu 0 147 93 7 1773 616 208 129 70 chr1 155824104 155824290 -41371142 - B3A SINE B2 0 198 2 7 1773 271 137 0 0 chr1 155824641 155824692 -41370740 + B3 SINE B2 162 212 -4 7 1773 193 93 0 85 chr1 155824692 155824739 -41370693 + GA-rich Low_complexity Low_complexity 1 43 0 7 1773 2496 153 9 16 chr1 155824924 155825348 -41370084 + MTC LTR MaLR 1 421 0 7 1773 503 272 47 6 chr1 155825847 155826017 -41369415 - MER58B DNA MER1_type -10 331 155 7 1773 345 241 67 22 chr1 155826058 155826147 -41369285 - ID_B1 SINE B4 -10 214 122 7 1773 1871 215 34 26 chr1 155826437 155826852 -41368580 - MTD LTR MaLR -1 418 1 7 1773 278 180 0 0 chr1 155827276 155827326 -41368106 - ID4_ SINE ID -29 54 5 7 1773 220 221 14 56 chr1 155827334 155827406 -41368026 - B1F1 SINE Alu 0 149 81 7 1773 461 62 15 0 chr1 155827460 155827525 -41367907 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1773 255 31 0 0 chr1 155827531 155827563 -41367869 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 7 1773 436 182 131 0 chr1 155827581 155827680 -41367752 - B1_Mus1 SINE Alu -36 112 1 7 1773 206 239 0 21 chr1 155828654 155828701 -41366731 + CT-rich Low_complexity Low_complexity 3 48 0 7 1773 707 248 21 0 chr1 155828727 155828868 -41366564 - B1F SINE Alu -5 144 1 7 1773 815 177 7 13 chr1 155829517 155829666 -41365766 - B1_Mur1 SINE Alu -1 148 1 7 1773 1397 119 8 55 chr1 155829938 155830195 -41365237 - RLTR23 LTR ERV1 -7 423 179 7 1773 787 195 182 18 chr1 155830198 155830423 -41365009 - RLTR23 LTR ERV1 -168 262 1 7 1773 208 307 0 0 chr1 155831170 155831245 -41364187 + A-rich Low_complexity Low_complexity 1 75 0 7 1773 1032 83 0 0 chr1 155831484 155831617 -41363815 + B1_Mus2 SINE Alu 2 134 -13 7 1773 806 30 0 10 chr1 155831618 155831720 -41363712 + (GAA)n Simple_repeat Simple_repeat 1 101 0 7 1773 865 59 143 0 chr1 155832605 155832724 -41362708 + B1_Mus2 SINE Alu 2 137 -10 7 1773 678 250 7 13 chr1 155832856 155833010 -41362422 + RSINE1 SINE B4 4 156 -9 7 1773 209 344 0 45 chr1 155833053 155833120 -41362312 - L2b LINE L2 -3 3372 3309 7 1773 1021 169 59 5 chr1 155833213 155833415 -41362017 + B3 SINE B2 4 216 0 7 1773 541 231 54 137 chr1 155834222 155834235 -41361197 - ID_B1 SINE B4 -1 223 211 7 1773 809 107 107 0 chr1 155834235 155834366 -41361066 - B1_Mus1 SINE Alu -3 145 1 7 1773 541 231 54 137 chr1 155834366 155834593 -41360839 - ID_B1 SINE B4 -14 210 3 7 1773 542 205 174 88 chr1 155834617 155834832 -41360600 - B3 SINE B2 -1 215 8 7 1773 1004 136 6 0 chr1 155834832 155835008 -41360424 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 7 1773 495 0 0 0 chr1 155835008 155835063 -41360369 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 7 1773 1148 64 0 0 chr1 155835065 155835206 -41360226 - B1_Mus2 SINE Alu -6 141 1 7 1773 551 268 46 62 chr1 155835210 155835405 -41360027 - B3A SINE B2 -6 192 1 7 1773 2191 58 13 40 chr1 155836057 155836361 -41359071 - L1_Mus1 LINE L1 0 6567 6272 7 1773 211 312 56 43 chr1 155836661 155836822 -41358610 + L2c LINE L2 3031 3193 -194 7 1773 655 189 121 77 chr1 155837177 155837384 -41358048 + B3 SINE B2 1 216 0 7 1773 895 147 41 20 chr1 155837398 155837544 -41357888 - B1_Mur3 SINE Alu 0 149 1 7 1773 180 0 0 0 chr1 155837566 155837586 -41357846 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1773 342 61 0 0 chr1 155838163 155838212 -41357220 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 7 1773 225 313 20 124 chr1 155838549 155838702 -41356730 - MLT1G1 LTR MaLR -152 427 291 7 1773 5702 67 3 1 chr1 155838738 155839456 -41355976 - L1Md_F2 LINE L1 -11 6571 5853 7 1773 252 0 0 0 chr1 155840487 155840515 -41354917 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1773 840 146 2 1 chr1 155840777 155840904 -41354528 + B3 SINE B2 4 140 -55 7 1773 2040 191 258 40 chr1 155840904 155841509 -41353923 + RMER19A LTR ERVK 1 737 0 7 1773 671 187 83 50 chr1 155841509 155841561 -41353871 + B2_Mm2 SINE B2 141 188 -7 7 1773 245 215 149 30 chr1 155841688 155841755 -41353677 - PB1D10 SINE Alu 0 117 43 7 1773 180 0 0 0 chr1 155842491 155842511 -41352921 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1773 1105 73 0 0 chr1 155842513 155842649 -41352783 - B1_Mus1 SINE Alu -11 137 2 7 1773 1053 107 47 78 chr1 155842678 155842870 -41352562 + B2_Mm2 SINE B2 2 187 -8 7 1773 1073 79 0 14 chr1 155843556 155843697 -41351735 + B1_Mus1 SINE Alu 1 139 -9 7 1773 1242 146 60 19 chr1 155843763 155843915 -41351517 + URR1B DNA MER1_type 1 154 -71 7 1773 306 0 0 0 chr1 155843915 155843949 -41351483 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1773 1242 146 60 19 chr1 155843949 155844012 -41351420 + URR1B DNA MER1_type 155 223 -2 7 1774 192 323 175 30 chr1 155845162 155845459 -41349973 + L2a LINE L2 2173 2512 -907 7 1774 883 241 68 104 chr1 155845463 155845779 -41349653 + ORR1D2 LTR MaLR 1 301 -69 7 1774 717 204 126 40 chr1 155845779 155845978 -41349454 - B3 SINE B2 0 216 1 7 1774 883 241 68 104 chr1 155845978 155846045 -41349387 + ORR1D2 LTR MaLR 302 370 0 7 1774 418 301 154 19 chr1 155846279 155846435 -41348997 - B3A SINE B2 -20 178 2 7 1774 193 336 139 22 chr1 155846600 155846737 -41348695 + L2a LINE L2 2958 3110 -265 7 1774 334 330 0 63 chr1 155846842 155846968 -41348464 + L2a LINE L2 3309 3426 0 7 1774 222 279 29 14 chr1 155847723 155847792 -41347640 + CT-rich Low_complexity Low_complexity 3 72 0 7 1774 1061 178 188 36 chr1 155847922 155848083 -41347349 - ORR1C2 LTR MaLR 0 384 204 7 1774 566 28 14 0 chr1 155848083 155848155 -41347277 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1774 1061 178 188 36 chr1 155848155 155848243 -41347189 - ORR1C2 LTR MaLR -181 203 97 7 1774 840 32 0 0 chr1 155848245 155848339 -41347093 + L1Md_F2 LINE L1 5493 5586 -297 7 1774 8277 45 1 0 chr1 155848339 155849322 -41346110 + L1Md_F2 LINE L1 5587 6570 -12 7 1774 483 200 21 0 chr1 155849322 155849417 -41346015 - ORR1C2 LTR MaLR -273 101 5 7 1774 675 128 246 8 chr1 155849439 155849557 -41345875 - B1_Mus1 SINE Alu 0 148 3 7 1774 1218 100 50 6 chr1 155849557 155849738 -41345694 - B2_Mm2 SINE B2 -5 190 2 7 1774 471 208 54 27 chr1 155849866 155849999 -41345433 - ORR1D1 LTR MaLR -14 405 273 7 1774 751 222 12 24 chr1 155849998 155850164 -41345268 - ORR1D1 LTR MaLR -208 166 3 7 1774 432 178 97 19 chr1 155850218 155850321 -41345111 - PB1D7 SINE Alu -5 115 5 7 1774 239 340 131 17 chr1 155850719 155850955 -41344477 - L3 LINE CR1 -254 4235 3973 7 1774 414 266 51 13 chr1 155851097 155851253 -41344179 - L1MD2 LINE L1 -2 6357 6196 7 1774 297 128 0 0 chr1 155851457 155851504 -41343928 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1774 256 120 59 20 chr1 155851577 155851679 -41343753 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1774 911 63 165 0 chr1 155851684 155851811 -41343621 - B1_Mus1 SINE Alu 0 148 1 7 1774 922 159 199 0 chr1 155851816 155851992 -41343440 - B3 SINE B2 -5 211 1 7 1774 241 387 25 20 chr1 155852101 155852299 -41343133 + L2 LINE L2 2578 2776 -643 7 1774 810 113 0 0 chr1 155852330 155852454 -41342978 + (CCA)n Simple_repeat Simple_repeat 1 124 0 7 1774 189 171 0 0 chr1 155852455 155852490 -41342942 + (CAA)n Simple_repeat Simple_repeat 1 35 0 7 1774 261 132 0 0 chr1 155852497 155852535 -41342897 + B3A SINE B2 4 41 -157 7 1774 465 305 6 13 chr1 155852566 155852722 -41342710 - L1MA5 LINE L1 -467 5833 5679 7 1774 558 206 39 0 chr1 155852730 155852832 -41342600 - B3 SINE B2 -95 121 16 7 1774 624 273 115 60 chr1 155853040 155853476 -41341956 - L1MC3 LINE L1 -579 7206 6747 7 1774 580 197 142 0 chr1 155853659 155853786 -41341646 - B1_Mur2 SINE Alu 0 149 5 7 1774 804 286 9 18 chr1 155853861 155854085 -41341347 - ID_B1 SINE B4 0 224 3 7 1774 734 199 15 0 chr1 155854171 155854302 -41341130 + B1_Mur1 SINE Alu 12 144 -5 7 1774 216 0 0 0 chr1 155854302 155854326 -41341106 + (CAACC)n Simple_repeat Simple_repeat 5 28 0 7 1774 278 257 34 34 chr1 155854724 155854841 -41340591 - PB1D7 SINE Alu -3 117 1 7 1774 362 307 42 116 chr1 155855162 155855229 -41340203 - L2a LINE L2 -230 3196 3140 7 1774 1416 94 16 0 chr1 155855229 155855421 -41340011 - B2_Mm2 SINE B2 0 195 1 7 1774 362 307 42 116 chr1 155855421 155855663 -41339769 - L2a LINE L2 -287 3139 2910 7 1774 206 368 59 17 chr1 155856101 155856220 -41339212 + L4 LINE RTE 1587 1710 -319 7 1774 199 304 198 77 chr1 155856247 155856454 -41338978 - L2b LINE L2 -21 3405 3137 7 1774 506 28 28 0 chr1 155856454 155856525 -41338907 + Lx LINE L1 6580 6652 -2 7 1774 215 304 190 78 chr1 155856525 155856703 -41338729 - L2b LINE L2 -290 3136 2972 7 1774 186 383 25 25 chr1 155856841 155856959 -41338473 + L4 LINE RTE 1765 1882 -147 7 1774 286 316 160 6 chr1 155856978 155857147 -41338285 + MLT1A LTR MaLR 172 366 -8 7 1774 489 34 0 0 chr1 155857679 155857738 -41337694 + (TATG)n Simple_repeat Simple_repeat 4 62 0 7 1774 378 179 559 0 chr1 155857840 155857976 -41337456 - B3 SINE B2 -4 212 1 7 1774 247 297 63 42 chr1 155857999 155858094 -41337338 + RSINE1 SINE B4 1 97 -68 7 1774 399 258 65 0 chr1 155858093 155858186 -41337246 + RSINE1 SINE B4 43 141 -24 7 1774 233 306 0 0 chr1 155858194 155858256 -41337176 + CT-rich Low_complexity Low_complexity 2 63 0 7 1774 826 189 14 0 chr1 155858311 155858459 -41336973 + B1_Mur4 SINE Alu 1 150 0 7 1774 335 272 24 12 chr1 155859115 155859197 -41336235 - RSINE1 SINE B4 -74 91 9 7 1774 825 201 58 48 chr1 155859234 155859422 -41336010 + B3A SINE B2 2 191 -7 7 1774 425 377 0 58 chr1 155859581 155859753 -41335679 + RSINE1 SINE B4 4 165 0 7 1774 297 197 0 0 chr1 155859799 155859860 -41335572 + (CATA)n Simple_repeat Simple_repeat 4 64 0 7 1774 10078 21 0 0 chr1 155859915 155861737 -41333695 - L1Md_T LINE L1 0 6582 4761 8 1774 288 259 0 0 chr1 155861740 155861798 -41333634 + LTR82A LTR ERVL 135 192 -680 8 1774 226 307 55 61 chr1 155862083 155862246 -41333186 + LTR82A LTR ERVL 539 700 -172 8 1774 1028 220 14 9 chr1 155862257 155862468 -41332964 - B3 SINE B2 -4 212 1 8 1774 734 302 77 93 chr1 155862865 155863483 -41331949 - RLTR18 LTR ERVK -46 570 33 8 1774 225 0 0 0 chr1 155863531 155863556 -41331876 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1774 204 118 29 0 chr1 155864507 155864541 -41330891 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 8 1774 1159 35 30 0 chr1 155864545 155864714 -41330718 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 8 1774 595 259 47 52 chr1 155865805 155865836 -41329596 + CYRA11_Mm Unknown Y-chromosome 135 164 -453 8 1774 1233 116 0 41 chr1 155865836 155866033 -41329399 - URR1B DNA MER1_type 0 225 37 8 1774 843 261 25 0 chr1 155866101 155866304 -41329128 - B3 SINE B2 -3 213 6 8 1774 285 29 0 0 chr1 155866935 155866969 -41328463 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 8 1774 1765 245 98 11 chr1 155867981 155868451 -41326981 - RMER20A LTR ERVK 0 516 6 8 1774 222 62 0 0 chr1 155868593 155868625 -41326807 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1774 797 66 0 0 chr1 155868625 155868731 -41326701 - B1_Mus2 SINE Alu 0 147 42 8 1774 248 180 125 39 chr1 155868668 155868772 -41326660 - RLTR25B LTR ERVK -519 509 397 8 1774 395 0 0 162 chr1 155868773 155869570 -41325862 + (CTCTG)n Simple_repeat Simple_repeat 1 667 0 8 1774 377 86 0 33 chr1 155869572 155869632 -41325800 - B1_Mus2 SINE Alu -88 59 2 8 1774 488 216 0 158 chr1 155869864 155870029 -41325403 + B1_Mus1 SINE Alu 5 143 -5 8 1774 414 0 0 0 chr1 155870029 155870075 -41325357 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1774 664 115 97 9 chr1 155870106 155870220 -41325212 + B2_Mm2 SINE B2 58 181 -14 8 1774 544 271 7 40 chr1 155870523 155870673 -41324759 + RSINE1 SINE B4 11 155 -10 8 1774 1027 239 211 26 chr1 155870845 155870934 -41324498 - RLTR20A1 LTR ERVK 0 551 461 8 1774 498 33 0 0 chr1 155870934 155870994 -41324438 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1774 1027 239 211 26 chr1 155870994 155871364 -41324068 - RLTR20A1 LTR ERVK -91 460 7 8 1774 2369 114 0 3 chr1 155871728 155872054 -41323378 + ORR1A2 LTR MaLR 1 325 -2 8 1774 254 253 53 13 chr1 155872054 155872130 -41323302 + MLT1A1 LTR MaLR 330 408 0 8 1774 180 267 65 32 chr1 155872436 155872498 -41322934 - L2b LINE L2 -1 3374 3311 8 1774 602 96 10 0 chr1 155873073 155873177 -41322255 + (TC)n Simple_repeat Simple_repeat 1 105 0 8 1774 240 35 0 0 chr1 155873177 155873206 -41322226 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1774 274 185 111 0 chr1 155873211 155873265 -41322167 - U6 snRNA snRNA -45 62 3 8 1774 324 314 79 21 chr1 155873379 155873512 -41321920 - B4A SINE B4 -83 141 4 8 1774 225 0 0 0 chr1 155873526 155873551 -41321881 + (CAT)n Simple_repeat Simple_repeat 1 25 0 8 1774 334 202 116 71 chr1 155873569 155873681 -41321751 - B4A SINE B4 -68 224 108 8 1774 2211 79 154 12 chr1 155873698 155874043 -41321389 - MTB LTR MaLR -6 394 1 8 1774 333 233 0 14 chr1 155874043 155874117 -41321315 - B4A SINE B4 -219 73 1 8 1774 960 182 0 38 chr1 155874132 155874315 -41321117 - B2_Mm2 SINE B2 -19 176 1 8 1774 570 309 58 101 chr1 155875225 155875502 -41319930 - B4A SINE B4 -1 291 27 8 1774 269 354 16 53 chr1 155875786 155875974 -41319458 + MIR3 SINE MIR 27 207 -1 8 1774 307 388 118 52 chr1 155876001 155876306 -41319126 - LTR88a LTR Gypsy -34 782 458 8 1774 356 293 193 49 chr1 155877698 155878003 -41317429 - L2c LINE L2 0 3387 3039 8 1774 471 35 0 0 chr1 155878278 155878335 -41317097 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 8 1774 359 300 70 0 chr1 155878336 155878436 -41316996 - PB1D7 SINE Alu -11 109 3 8 1774 21 0 0 0 chr1 155878877 155878898 -41316534 + AT_rich Low_complexity Low_complexity 1 21 0 8 1774 305 280 48 102 chr1 155878997 155879144 -41316288 + MT2B LTR ERVL 120 258 -343 8 1774 807 184 7 28 chr1 155879041 155879186 -41316246 + B1_Mus1 SINE Alu 6 147 -1 8 1774 197 132 26 0 chr1 155879187 155879225 -41316207 + GA-rich Low_complexity Low_complexity 2 40 0 8 1774 640 146 136 15 chr1 155880227 155880359 -41315073 + B1_Mus1 SINE Alu 1 148 0 8 1774 226 264 8 39 chr1 155880696 155880826 -41314606 + (TATG)n Simple_repeat Simple_repeat 2 127 0 8 1774 387 194 0 0 chr1 155880869 155880972 -41314460 + (TG)n Simple_repeat Simple_repeat 2 104 0 8 1774 486 0 0 0 chr1 155881989 155882043 -41313389 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1774 513 251 204 30 chr1 155882092 155882293 -41313139 - B4A SINE B4 -55 237 2 8 1774 756 0 0 0 chr1 155882724 155882808 -41312624 + (GAA)n Simple_repeat Simple_repeat 1 84 0 8 1774 1163 175 14 23 chr1 155882815 155883031 -41312401 + B3 SINE B2 1 214 -2 8 1774 194 273 29 43 chr1 155883435 155883504 -41311928 - L2 LINE L2 -2912 507 440 8 1774 269 167 62 0 chr1 155883632 155883680 -41311752 - YREP_Mm Unknown Unknown -1508 304 254 8 1774 355 151 0 0 chr1 155883637 155883690 -41311742 + ID_B1 SINE B4 102 154 -70 8 1774 246 286 84 135 chr1 155883922 155884278 -41311154 - RMER10A LTR ERVL -86 356 19 8 1774 432 0 0 0 chr1 155884352 155884400 -41311032 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1774 258 267 150 0 chr1 155885025 155885085 -41310347 - B3A SINE B2 -129 69 1 8 1774 303 313 17 17 chr1 155885104 155885221 -41310211 - L1MD1 LINE L1 -240 6002 5886 8 1774 239 244 75 32 chr1 155885665 155885758 -41309674 + MLT1M LTR MaLR 46 142 -530 8 1774 549 0 0 0 chr1 155886184 155886245 -41309187 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1774 182 268 107 24 chr1 155886662 155886746 -41308686 + MIR SINE MIR 70 160 -102 8 1774 251 321 12 0 chr1 155886839 155886923 -41308509 + B2_Mm1t SINE B2 2 86 -107 8 1774 542 241 0 0 chr1 155886849 155886957 -41308475 + RSINE1 SINE B4 13 120 -45 8 1774 387 41 0 0 chr1 155886962 155887011 -41308421 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1774 337 188 12 12 chr1 155887424 155887510 -41307922 + CT-rich Low_complexity Low_complexity 2 87 0 8 1774 1239 111 0 0 chr1 155887528 155887699 -41307733 - B2_Mm2 SINE B2 -24 171 1 8 1774 711 206 14 22 chr1 155889162 155889301 -41306131 + B1_Mur4 SINE Alu 1 138 -12 8 1774 25 31 0 0 chr1 155889323 155889355 -41306077 + AT_rich Low_complexity Low_complexity 1 32 0 8 1774 393 252 152 26 chr1 155889367 155889518 -41305914 + B3 SINE B2 2 171 -45 8 1774 1288 65 22 0 chr1 155889556 155889785 -41305647 + (TCTA)n Simple_repeat Simple_repeat 1 233 0 8 1774 710 243 26 21 chr1 155889799 155889992 -41305440 - B4A SINE B4 -18 274 81 8 1774 3511 261 75 16 chr1 155890019 155890986 -41304446 - Lx8 LINE L1 -3 7470 6447 8 1774 327 271 12 0 chr1 155890990 155891075 -41304357 - B4A SINE B4 -204 88 3 8 1774 3150 259 54 27 chr1 155891379 155892236 -41303196 - Lx8 LINE L1 -352 7121 6242 8 1774 543 127 0 0 chr1 155892540 155892619 -41302813 + B3A SINE B2 1 79 -119 8 1774 821 278 15 0 chr1 155892736 155892934 -41302498 - B3 SINE B2 -15 201 1 8 1774 302 259 11 45 chr1 155893007 155893096 -41302336 - Lx8 LINE L1 -4 7469 7384 8 1774 507 214 19 10 chr1 155893551 155893655 -41301777 + B3A SINE B2 3 107 -91 8 1774 15134 77 11 2 chr1 155893847 155893860 -41301572 - L1_Mur1 LINE L1 -2580 3306 3296 8 1774 393 39 0 0 chr1 155893860 155893911 -41301521 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1774 15134 93 39 4 chr1 155893911 155897071 -41298361 - L1_Mur1 LINE L1 -2591 3295 10 8 1774 326 265 39 0 chr1 155897297 155897399 -41298033 + L1MD LINE L1 3635 3740 -2406 8 1774 180 0 0 0 chr1 155897492 155897512 -41297920 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8 1774 866 236 44 0 chr1 155897535 155897738 -41297694 + B3 SINE B2 1 212 -4 8 1774 1331 96 0 26 chr1 155897767 155897960 -41297472 - B2_Mm2 SINE B2 -5 190 3 8 1774 287 301 10 10 chr1 155897960 155898064 -41297368 + L1M4 LINE L1 4483 4586 -1560 8 1774 354 194 28 0 chr1 155898258 155898330 -41297102 + RSINE1 SINE B4 27 100 -65 8 1774 557 278 64 32 chr1 155898368 155898524 -41296908 - Lx8 LINE L1 -1098 6375 6215 8 1774 1142 153 113 5 chr1 155898729 155898933 -41296499 - URR1A DNA MER1_type 0 226 1 8 1774 209 254 91 0 chr1 155898934 155898989 -41296443 - MIR3 SINE MIR -49 159 100 8 1774 609 286 46 59 chr1 155899376 155899595 -41295837 - B3A SINE B2 0 216 1 8 1774 271 359 33 0 chr1 155899779 155899871 -41295561 + Tigger7 DNA MER2_type 2397 2491 0 8 1774 1383 39 0 0 chr1 155900465 155900643 -41294789 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1774 446 289 89 134 chr1 155901051 155901446 -41293986 - MTEb LTR MaLR 0 379 3 8 1774 1448 83 5 5 chr1 155903086 155903279 -41292153 - B2_Mm2 SINE B2 -1 194 2 8 1774 258 32 0 0 chr1 155903297 155903328 -41292104 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1774 1136 59 0 0 chr1 155903330 155903465 -41291967 - B1_Mus2 SINE Alu -11 136 2 8 1774 388 288 297 10 chr1 155904477 155904758 -41290674 - MLT1J1 LTR MaLR -49 399 37 8 1774 583 301 87 0 chr1 155904869 155905075 -41290357 + ID_B1 SINE B4 1 224 0 8 1774 1048 270 90 20 chr1 155905267 155905328 -41290104 - ORR1D2 LTR MaLR 0 370 313 8 1774 2110 98 30 65 chr1 155905328 155905666 -41289766 + ORR1A3 LTR MaLR 1 326 0 8 1774 1048 270 90 20 chr1 155905666 155905948 -41289484 - ORR1D2 LTR MaLR -58 312 3 8 1774 24 0 0 0 chr1 155906090 155906114 -41289318 + AT_rich Low_complexity Low_complexity 1 24 0 8 1774 1458 269 86 70 chr1 155906167 155906245 -41289187 + Lx8 LINE L1 5254 5328 -552 8 1774 1212 48 0 0 chr1 155906245 155906392 -41289040 + B1_Mus2 SINE Alu 1 147 0 9 1774 1557 235 102 42 chr1 155906392 155906530 -41288902 + Lx8 LINE L1 5300 5436 -444 8 1774 881 120 0 7 chr1 155906530 155906673 -41288759 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 9 1774 3391 280 82 62 chr1 155906673 155907956 -41287476 + Lx8 LINE L1 5420 6800 -673 8 1774 356 239 305 6 chr1 155907956 155908120 -41287312 - B3 SINE B2 -2 214 2 9 1774 3391 303 72 72 chr1 155908120 155908503 -41286929 + Lx8 LINE L1 6801 7179 -294 8 1774 1208 48 0 0 chr1 155908503 155908649 -41286783 + B1_Mm SINE Alu 2 147 0 9 1774 3391 303 72 72 chr1 155908649 155908821 -41286611 + Lx8 LINE L1 7180 7324 -149 8 1774 303 191 0 0 chr1 155908942 155909005 -41286427 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 9 1774 423 268 132 66 chr1 155909005 155909157 -41286275 - RSINE1 SINE B4 0 165 4 9 1774 938 271 99 15 chr1 155909317 155909650 -41285782 + MLT1A1 LTR MaLR 2 362 -46 9 1774 197 250 19 19 chr1 155910670 155910723 -41284709 + MIRc SINE MIR 82 134 -134 9 1774 1241 91 48 0 chr1 155911124 155911310 -41284122 + B2_Mm2 SINE B2 1 195 0 9 1774 1008 138 49 16 chr1 155911414 155911598 -41283834 + B2_Mm2 SINE B2 1 190 -5 9 1774 220 125 0 0 chr1 155913851 155913883 -41281549 + B4 SINE B4 8 39 -253 9 1774 408 281 220 6 chr1 155913886 155914054 -41281378 - ID_B1 SINE B4 -18 206 3 9 1774 796 294 26 52 chr1 155914704 155915012 -41280420 + MER33 DNA MER1_type 25 324 0 9 1774 350 223 30 8 chr1 155915208 155915339 -41280093 + CT-rich Low_complexity Low_complexity 4 137 0 9 1774 231 257 28 14 chr1 155915359 155915430 -41280002 - ID4_ SINE ID -10 73 2 9 1774 521 281 52 0 chr1 155915559 155915694 -41279738 - B1F1 SINE Alu -6 143 2 9 1774 864 244 28 32 chr1 155915727 155915943 -41279489 + B3 SINE B2 1 215 -1 9 1774 423 0 0 0 chr1 155915999 155916046 -41279386 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1774 1009 129 0 0 chr1 155916474 155916621 -41278811 - B1_Mur3 SINE Alu -2 147 1 9 1774 222 211 0 0 chr1 155916621 155916659 -41278773 - B1_Mur4 SINE Alu -110 40 3 9 1774 323 281 79 24 chr1 155917161 155917332 -41278100 - MIRc SINE MIR -1 267 87 9 1774 22 56 0 0 chr1 155917503 155917539 -41277893 + AT_rich Low_complexity Low_complexity 1 36 0 9 1774 393 322 46 85 chr1 155917660 155917942 -41277490 + B4 SINE B4 2 272 -20 9 1774 210 71 0 0 chr1 155918002 155918030 -41277402 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1774 264 348 147 22 chr1 155918062 155918294 -41277138 - MER20B DNA MER1_type -334 449 189 9 1774 258 284 13 26 chr1 155919329 155919405 -41276027 - ID4_ SINE ID -8 75 1 9 1774 600 183 7 14 chr1 155919416 155919560 -41275872 + CT-rich Low_complexity Low_complexity 2 144 0 9 1774 730 154 22 0 chr1 155919728 155919865 -41275567 + B1_Mur4 SINE Alu 1 145 -5 9 1774 238 246 18 0 chr1 155920060 155920117 -41275315 + C-rich Low_complexity Low_complexity 5 62 0 9 1774 553 259 0 7 chr1 155920117 155920253 -41275179 - ID_B1 SINE B4 0 224 90 9 1774 290 285 60 4 chr1 155920424 155920560 -41274872 - PB1D7 SINE Alu 0 149 1 9 1774 426 265 51 52 chr1 155920564 155920595 -41274837 - L1M5 LINE L1 -986 5160 5114 9 1774 1420 84 5 30 chr1 155920595 155920792 -41274640 - B2_Mm1a SINE B2 0 193 2 9 1774 426 258 1 55 chr1 155920792 155920922 -41274510 - L1M5 LINE L1 -1028 5118 4991 9 1774 257 159 0 0 chr1 155921067 155921111 -41274321 - B3A SINE B2 -154 44 1 9 1774 463 16 0 30 chr1 155921318 155921384 -41274048 + (CAAAA)n Simple_repeat Simple_repeat 5 68 0 9 1774 546 16 0 0 chr1 155922119 155922182 -41273250 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1774 210 185 0 0 chr1 155922182 155922211 -41273221 + polypurine Low_complexity Low_complexity 1 29 0 9 1774 243 0 0 0 chr1 155922211 155922238 -41273194 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 9 1774 210 185 0 0 chr1 155922238 155922262 -41273170 + polypurine Low_complexity Low_complexity 30 53 0 9 1774 591 74 0 0 chr1 155922268 155922349 -41273083 + (GGGA)n Simple_repeat Simple_repeat 2 82 0 9 1774 230 222 22 0 chr1 155922357 155922402 -41273030 + G-rich Low_complexity Low_complexity 5 50 0 9 1774 2396 141 73 15 chr1 155923007 155923404 -41272028 + MTC LTR MaLR 2 421 0 9 1774 1573 44 0 0 chr1 155924575 155924757 -41270675 - B2_Mm1a SINE B2 -10 183 2 9 1774 298 210 16 0 chr1 155925649 155925711 -41269721 + MTEa LTR MaLR 317 379 0 9 1774 447 284 0 0 chr1 155925755 155925871 -41269561 - Tigger1 DNA MER2_type -2298 120 5 9 1774 505 198 24 40 chr1 155926032 155926158 -41269274 - RMER1B Other Other 0 1066 943 9 1774 1630 223 80 60 chr1 155926185 155927056 -41268376 - RMER1B Other Other -549 517 1 9 1774 204 135 27 0 chr1 155928110 155928147 -41267285 + C-rich Low_complexity Low_complexity 5 42 0 9 1774 690 281 139 73 chr1 155929421 155929553 -41265879 - L1MA8 LINE L1 -117 6174 6036 9 1774 1409 70 21 0 chr1 155929553 155929739 -41265693 + B2_Mm1t SINE B2 3 192 -1 9 1774 690 281 139 73 chr1 155929739 155930074 -41265358 - L1MA8 LINE L1 -256 6035 5676 9 1774 287 258 297 43 chr1 155930239 155930539 -41264893 - L1ME1 LINE L1 -8 6171 5796 9 1774 384 279 28 0 chr1 155930575 155930683 -41264749 - PB1D7 SINE Alu 0 120 10 9 1774 25 31 0 0 chr1 155930913 155930945 -41264487 + AT_rich Low_complexity Low_complexity 1 32 0 9 1774 669 241 7 14 chr1 155930968 155931111 -41264321 - B1_Mus2 SINE Alu 0 147 6 9 1774 351 222 37 83 chr1 155931014 155931122 -41264310 - MT2B LTR ERVL -343 258 156 9 1774 369 247 12 0 chr1 155931124 155931205 -41264227 - ID4 SINE ID 0 83 2 9 1774 183 171 0 0 chr1 155931487 155931522 -41263910 - MIR SINE MIR -68 140 106 9 1774 236 281 0 0 chr1 155931892 155931949 -41263483 + (CATA)n Simple_repeat Simple_repeat 4 60 0 9 1774 238 346 28 18 chr1 155932144 155932253 -41263179 + MIR SINE MIR 35 144 -118 9 1774 1708 181 22 48 chr1 155932480 155932933 -41262499 - MT2A LTR ERVL -8 593 3 9 1774 2528 130 130 51 chr1 155934694 155935017 -41260415 + RMER6C LTR ERVK 1 349 -341 9 1774 896 39 31 0 chr1 155935017 155935146 -41260286 + (GA)n Simple_repeat Simple_repeat 2 134 0 9 1774 2528 130 130 51 chr1 155935146 155935431 -41260001 + RMER6C LTR ERVK 350 657 -33 9 1774 207 302 0 0 chr1 155935434 155935487 -41259945 + (CATA)n Simple_repeat Simple_repeat 2 54 0 9 1774 522 260 20 14 chr1 155935605 155935753 -41259679 + B1F SINE Alu 1 149 0 9 1774 527 15 30 0 chr1 155936188 155936255 -41259177 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 9 1774 3382 35 5 0 chr1 155936278 155936672 -41258760 - MTA_Mm LTR MaLR 0 396 1 9 1774 297 109 0 0 chr1 155936981 155937027 -41258405 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 9 1774 350 286 114 49 chr1 155937091 155937275 -41258157 + MER20 DNA MER1_type 8 203 -16 9 1774 296 319 34 45 chr1 155937492 155937669 -41257763 + MLT1L LTR MaLR 416 590 -20 9 1774 2985 141 34 6 chr1 155937955 155938463 -41256969 - RLTR28 LTR ERVL 0 524 3 9 1774 1362 194 45 73 chr1 155938578 155938933 -41256499 + ORR1D2 LTR MaLR 26 370 0 9 1774 315 0 0 0 chr1 155939156 155939191 -41256241 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1774 1951 88 60 75 chr1 155939249 155939581 -41255851 + ORR1A2 LTR MaLR 1 327 0 9 1774 3804 36 0 11 chr1 155939720 155940174 -41255258 - L1Md_F2 LINE L1 -1 6581 6133 9 1774 1190 55 7 0 chr1 155941094 155941239 -41254193 - B1_Mus1 SINE Alu 0 148 3 9 1774 326 258 9 149 chr1 155941442 155941556 -41253876 - PB1D9 SINE Alu -21 99 2 9 1774 223 312 69 42 chr1 155941674 155941818 -41253614 + B4 SINE B4 45 192 -100 9 1774 274 371 0 0 chr1 155941728 155941825 -41253607 + PB1D10 SINE Alu 12 108 -9 9 1774 945 37 72 22 chr1 155942005 155942144 -41253288 + B2_Mm2 SINE B2 1 146 -49 9 1774 876 150 121 0 chr1 155942162 155942185 -41253247 + B2_Mm2 SINE B2 2 24 -171 9 1774 2822 93 39 0 chr1 155942185 155942570 -41252862 - MTB LTR MaLR 0 400 1 9 1774 890 142 42 0 chr1 155942570 155942720 -41252712 + B2_Mm1t SINE B2 25 194 -1 9 1774 851 161 0 6 chr1 155942721 155942883 -41252549 + GA-rich Low_complexity Low_complexity 4 164 0 9 1774 519 17 0 0 chr1 155942883 155942943 -41252489 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 9 1774 1551 47 11 0 chr1 155943072 155943262 -41252170 + B2_Mm1a SINE B2 2 193 0 9 1774 564 15 0 0 chr1 155943701 155943766 -41251666 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1774 351 0 0 0 chr1 155944142 155944181 -41251251 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1774 408 101 14 0 chr1 155944182 155944251 -41251181 - B1_Mus2 SINE Alu -13 134 65 9 1774 783 290 77 9 chr1 155944828 155945166 -41250266 - L1MB3 LINE L1 -42 6141 5781 9 1774 303 28 0 0 chr1 155946550 155946586 -41248846 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1774 634 274 133 17 chr1 155946596 155946648 -41248784 - B4A SINE B4 -18 274 218 9 1774 594 0 0 0 chr1 155946648 155946714 -41248718 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 9 1774 634 274 133 17 chr1 155946714 155946902 -41248530 - B4A SINE B4 -75 217 7 9 1774 525 250 0 9 chr1 155946948 155947061 -41248371 - PB1D10 SINE Alu -1 116 5 9 1774 945 220 25 46 chr1 155947101 155947382 -41248050 + RLTR11A2 LTR ERVK 1 275 -252 9 1774 2286 105 6 30 chr1 155947572 155947907 -41247525 - ORR1A2 LTR MaLR 0 327 1 9 1774 344 248 181 13 chr1 155948336 155948491 -41246941 + ORR1D2 LTR MaLR 8 188 -182 9 1774 939 296 16 0 chr1 155948505 155948758 -41246674 - MTE2b LTR MaLR -37 342 86 9 1774 255 372 21 0 chr1 155948803 155948897 -41246535 + ORR1D2 LTR MaLR 256 351 -28 9 1774 461 301 65 52 chr1 155949395 155949626 -41245806 + RMER2 LTR ERV1 334 567 0 9 1774 3912 229 31 39 chr1 155950825 155951916 -41243516 + MTD-int LTR MaLR 177 1258 0 9 1774 1337 237 131 8 chr1 155951916 155952282 -41243150 + MTD LTR MaLR 1 411 -8 9 1774 706 220 14 27 chr1 155952294 155952514 -41242918 + L1M3 LINE L1 2827 3043 -3097 9 1774 280 313 24 0 chr1 155952515 155952598 -41242834 + PB1D10 SINE Alu 6 90 -27 9 1774 243 0 0 0 chr1 155952606 155952633 -41242799 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 9 1774 791 221 0 32 chr1 155952633 155952787 -41242645 + RSINE1 SINE B4 3 151 -14 1 1774 639 252 119 23 chr1 155952791 155953060 -41242372 + L1MB2 LINE L1 5833 6124 -47 1 1774 2005 71 78 0 chr1 155953076 155953372 -41242060 - ORR1A2 LTR MaLR -8 319 1 1 1774 23 33 0 0 chr1 155953377 155953407 -41242025 + AT_rich Low_complexity Low_complexity 1 30 0 1 1774 182 62 31 0 chr1 155953419 155953451 -41241981 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 1774 321 18 89 0 chr1 155953699 155953755 -41241677 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 1 1774 965 201 15 54 chr1 155953756 155953961 -41241471 + B3 SINE B2 20 216 0 1 1774 518 232 211 32 chr1 155954769 155955081 -41240351 + RLTR9A LTR ERVK 1 368 0 1 1774 1019 151 29 0 chr1 155955081 155955274 -41240158 - URR1B DNA MER1_type -5 220 6 1 1774 450 0 0 0 chr1 155955448 155955498 -41239934 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1774 348 24 0 0 chr1 155955499 155955540 -41239892 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1774 8945 63 19 8 chr1 155955570 155957427 -41238005 - L1VL4 LINE L1 -1482 2077 199 1 1774 248 303 0 20 chr1 155957427 155957528 -41237904 - MTEa LTR MaLR -280 99 1 1 1774 201 154 0 0 chr1 155958460 155958499 -41236933 + A-rich Low_complexity Low_complexity 1 39 0 1 1774 201 154 0 0 chr1 155958669 155958708 -41236724 + GA-rich Low_complexity Low_complexity 3 41 0 1 1774 343 339 48 5 chr1 155959691 155959878 -41235554 - MIR SINE MIR -33 229 35 1 1774 876 186 96 0 chr1 155960013 155960201 -41235231 + B3 SINE B2 11 216 0 1 1774 2715 72 3 13 chr1 155960239 155960631 -41234801 - MTA_Mm LTR MaLR -8 388 1 1 1774 3265 19 0 0 chr1 155962044 155962412 -41233020 - L1Md_A LINE L1 -1 6581 6214 1 1774 189 0 0 0 chr1 155964118 155964139 -41231293 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1774 336 154 12 82 chr1 155964533 155964618 -41230814 - B3A SINE B2 -118 80 2 1 1774 552 30 0 0 chr1 155965235 155965301 -41230131 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1774 269 342 26 20 chr1 155966582 155966734 -41228698 - RSINE1 SINE B4 -2 163 11 1 1774 340 284 0 10 chr1 155967279 155967375 -41228057 + MTEb LTR MaLR 27 121 -238 1 1774 390 246 88 0 chr1 155967464 155967578 -41227854 + MTEb LTR MaLR 256 379 0 1 1774 438 214 42 11 chr1 155968615 155968726 -41226706 - PB1D7 SINE Alu 0 120 6 1 1774 2370 98 0 6 chr1 155968895 155969254 -41226178 - MT2B2 LTR ERVL -202 382 26 1 1774 683 293 56 21 chr1 155969887 155970121 -41225311 + MIRb SINE MIR 26 267 -1 1 1774 486 91 0 0 chr1 155970279 155970356 -41225076 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1774 355 298 71 0 chr1 155970619 155970787 -41224645 - L1M5 LINE L1 -2539 3607 3428 1 1774 225 192 58 0 chr1 155970852 155970904 -41224528 + ORR1E LTR MaLR 9 63 -296 1 1774 185 94 31 0 chr1 155970906 155970938 -41224494 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1 1774 6969 164 58 11 chr1 155970940 155973109 -41222323 - Lx5 LINE L1 -3 7047 4755 1 1774 2536 137 39 0 chr1 155973107 155973260 -41222172 + L1_Mur2 LINE L1 3303 3463 -2414 1 1774 180 0 0 0 chr1 155973260 155973280 -41222152 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1774 2536 137 39 0 chr1 155973280 155973564 -41221868 + L1_Mur2 LINE L1 3464 3755 -2122 1 1774 2219 153 13 15 chr1 155973564 155973955 -41221477 - RMER19B LTR ERVK 0 902 513 1 1774 245 29 0 29 chr1 155973961 155973996 -41221436 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1774 300 27 0 0 chr1 155973996 155974033 -41221399 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1774 4507 86 96 44 chr1 155974296 155975026 -41220406 - Lx3_Mus LINE L1 0 7009 6242 1 1775 28 48 0 0 chr1 155977326 155977368 -41218064 + AT_rich Low_complexity Low_complexity 1 42 0 1 1775 403 311 47 47 chr1 155977388 155977560 -41217872 - B4 SINE B4 0 292 121 1 1775 33 25 0 0 chr1 155977611 155977651 -41217781 + AT_rich Low_complexity Low_complexity 1 40 0 1 1775 185 0 40 0 chr1 155977735 155977760 -41217672 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1775 1202 48 0 20 chr1 155977760 155977903 -41217529 - B1_Mm SINE Alu -6 141 1 1 1775 2408 241 106 32 chr1 155977945 155978664 -41216768 - Lx9 LINE L1 -217 7427 6656 1 1775 394 171 26 0 chr1 155978746 155978822 -41216610 - B4 SINE B4 -214 78 1 1 1775 39206 39 4 8 chr1 155979083 155985305 -41210127 - L1Md_F2 LINE L1 0 6582 422 1 1775 548 203 131 15 chr1 155985311 155985441 -41209991 - B1_Mus1 SINE Alu -2 146 2 1 1775 784 201 16 77 chr1 155985999 155986193 -41209239 - B3A SINE B2 -16 182 1 1 1775 750 241 38 0 chr1 155986362 155986520 -41208912 - L1_Mur3 LINE L1 -6914 798 635 1 1775 679 181 71 0 chr1 155987243 155987370 -41208062 + B1F SINE Alu 1 136 -13 1 1775 609 255 7 39 chr1 155988196 155988345 -41207087 - B3A SINE B2 0 198 55 1 1775 246 81 0 0 chr1 155988345 155988382 -41207050 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 1 1775 1868 311 62 26 chr1 155989556 155990295 -41205137 + Lx8 LINE L1 6268 7033 -440 1 1775 207 0 0 0 chr1 155991239 155991262 -41204170 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1775 805 259 105 99 chr1 155991413 155991750 -41203682 - L1MB1 LINE L1 -234 5955 5650 1 1775 198 0 0 0 chr1 155991750 155991772 -41203660 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1775 1319 266 102 77 chr1 155991772 155992661 -41202771 - L1MB1 LINE L1 -540 5649 4697 1 1775 266 319 60 0 chr1 155993096 155993212 -41202220 - L1MB1 LINE L1 -2031 4109 3987 1 1775 871 270 100 31 chr1 155993284 155993704 -41201728 - L1ME2 LINE L1 -26 6138 5690 1 1775 381 233 125 10 chr1 155993775 155993879 -41201553 + RSINE1 SINE B4 6 121 -44 1 1775 240 137 0 0 chr1 155993924 155993975 -41201457 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1775 756 32 0 0 chr1 155993975 155994070 -41201362 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1775 1563 192 78 17 chr1 155994610 155994970 -41200462 - MTD LTR MaLR -37 382 1 1 1775 477 0 0 0 chr1 155995790 155995843 -41199589 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1775 189 319 65 11 chr1 155995879 155995971 -41199461 - L2c LINE L2 -31 3356 3260 1 1775 1014 54 0 0 chr1 155996860 155996989 -41198443 + (GA)n Simple_repeat Simple_repeat 2 130 0 1 1775 333 0 0 0 chr1 155998132 155998169 -41197263 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1775 709 324 20 31 chr1 155998269 155998562 -41196870 - B4A SINE B4 0 292 3 1 1775 377 176 0 86 chr1 156000553 156000634 -41194798 - ID4 SINE ID 0 83 10 1 1775 275 318 166 38 chr1 156000858 156001015 -41194417 + MIR SINE MIR 7 183 -79 2 1775 224 339 109 37 chr1 156001426 156001640 -41193792 + L2b LINE L2 2934 3157 -230 3 1775 459 225 70 28 chr1 156001777 156001919 -41193513 - B1F1 SINE Alu 0 149 2 4 1775 1391 99 11 0 chr1 156002043 156002234 -41193198 - B2_Mm1t SINE B2 0 193 1 5 1775 360 0 0 0 chr1 156002838 156002878 -41192554 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1775 490 262 15 31 chr1 156002924 156003054 -41192378 - RSINE1 SINE B4 -35 130 3 7 1775 336 48 0 0 chr1 156004246 156004288 -41191144 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1775 1022 272 107 12 chr1 156004715 156005053 -41190379 + ORR1D2 LTR MaLR 1 370 0 9 1775 980 241 85 17 chr1 156005788 156006024 -41189408 - Lx8 LINE L1 -155 7318 7067 1 1775 1688 256 89 18 chr1 156006033 156006483 -41188949 + RCHARR1 DNA MER1_type 4 485 -489 1 1775 209 109 0 21 chr1 156007040 156007087 -41188345 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 1 1775 1328 204 131 29 chr1 156007210 156007690 -41187742 + RCHARR1 DNA MER1_type 324 852 -122 1 1775 298 306 111 40 chr1 156007979 156008105 -41187327 - MLT1G1 LTR MaLR -14 565 431 1 1775 278 228 11 40 chr1 156008205 156008379 -41187053 + (TCCTG)n Simple_repeat Simple_repeat 2 170 0 1 1775 351 319 120 7 chr1 156008383 156008525 -41186907 - HAL1-3A_ME LINE L1 -417 2441 2284 1 1775 241 368 90 75 chr1 156008664 156008852 -41186580 - MLT1G1 LTR MaLR -404 191 1 1 1775 2157 121 51 49 chr1 156009613 156010011 -41185421 - ORR1B1 LTR MaLR -25 369 1 1 1775 1229 22 0 0 chr1 156010541 156010677 -41184755 + L1Md_F2 LINE L1 5451 5586 -297 1 1775 8506 39 0 0 chr1 156010678 156011673 -41183759 + L1Md_F2 LINE L1 5588 6582 0 1 1775 374 43 0 0 chr1 156012472 156012518 -41182914 + URR1B DNA MER1_type 180 225 0 1 1775 1009 218 59 28 chr1 156012728 156013029 -41182403 + RLTR26 LTR ERVK 5 348 -294 2 1775 395 291 37 52 chr1 156013041 156013175 -41182257 + RLTR26 LTR ERVK 504 635 -7 2 1775 396 0 0 0 chr1 156013318 156013362 -41182070 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 2 1775 334 359 87 36 chr1 156013461 156013736 -41181696 + L1ME3B LINE L1 5009 5297 -849 2 1775 2292 106 22 0 chr1 156013760 156014080 -41181352 + ORR1A2 LTR MaLR 1 327 0 2 1775 529 299 111 18 chr1 156014220 156014615 -41180817 + L1ME3B LINE L1 5583 6014 -226 2 1775 287 254 114 15 chr1 156014705 156014837 -41180595 + L1ME3B LINE L1 6026 6170 -3 2 1775 845 158 261 5 chr1 156017266 156017469 -41177963 - MTD LTR MaLR -14 405 151 2 1775 232 404 27 7 chr1 156018111 156018258 -41177174 - L2b LINE L2 -1 3374 3225 2 1775 383 0 0 21 chr1 156018293 156018341 -41177091 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 2 1775 468 0 0 0 chr1 156018344 156018396 -41177036 + (CCAA)n Simple_repeat Simple_repeat 4 55 0 2 1775 242 29 29 0 chr1 156018429 156018464 -41176968 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 1775 317 326 99 28 chr1 156018787 156018809 -41176623 - B4 SINE B4 -49 243 92 2 1775 461 276 17 8 chr1 156018809 156018929 -41176503 - B1_Mur1 SINE Alu -1 119 7 3 1775 291 286 11 11 chr1 156018934 156019026 -41176406 - 4.5SRNA scRNA scRNA -2 92 1 3 1775 203 359 73 42 chr1 156019152 156019384 -41176048 - L3 LINE CR1 -620 3869 3626 3 1775 191 36 36 0 chr1 156019384 156019412 -41176020 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1775 203 359 73 42 chr1 156019412 156019438 -41175994 - L3 LINE CR1 -864 3625 3603 3 1775 23 33 0 0 chr1 156019632 156019662 -41175770 + AT_rich Low_complexity Low_complexity 1 30 0 3 1775 380 311 128 33 chr1 156019692 156019965 -41175467 + L2 LINE L2 1963 2261 -1158 3 1775 289 290 96 47 chr1 156020014 156020178 -41175254 - MLT1A0 LTR MaLR -1 407 175 3 1775 574 0 58 0 chr1 156020178 156020264 -41175168 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1775 289 322 138 42 chr1 156020264 156020376 -41175056 - MLT1A0 LTR MaLR -191 174 65 3 1775 26 50 0 0 chr1 156020416 156020456 -41174976 + AT_rich Low_complexity Low_complexity 1 40 0 3 1775 232 369 15 0 chr1 156020508 156020573 -41174859 + L2b LINE L2 3289 3354 -21 3 1775 514 323 145 40 chr1 156021276 156021619 -41173813 + MLT1J1 LTR MaLR 66 444 0 4 1775 390 21 0 0 chr1 156022227 156022274 -41173158 + (TGG)n Simple_repeat Simple_repeat 1 47 0 4 1775 307 319 0 21 chr1 156022329 156022425 -41173007 + CT-rich Low_complexity Low_complexity 3 96 0 4 1775 205 337 116 10 chr1 156022535 156022742 -41172690 - MIR SINE MIR -19 243 15 4 1775 180 274 16 16 chr1 156022939 156023002 -41172430 + MIRc SINE MIR 67 129 -139 4 1775 207 100 0 0 chr1 156023010 156023040 -41172392 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 4 1775 226 227 27 0 chr1 156023519 156023594 -41171838 + CT-rich Low_complexity Low_complexity 2 78 0 4 1775 561 68 0 0 chr1 156024543 156024617 -41170815 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1775 189 250 42 0 chr1 156026924 156026972 -41168460 + L2c LINE L2 3109 3158 -229 4 1775 620 159 6 0 chr1 156027081 156027257 -41168175 + GA-rich Low_complexity Low_complexity 4 180 0 4 1775 210 176 0 0 chr1 156027262 156027296 -41168136 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 5 1775 186 264 107 40 chr1 156028033 156028108 -41167324 + L3 LINE CR1 955 1034 -3455 5 1775 393 284 85 17 chr1 156030229 156030381 -41165051 + MIR SINE MIR 4 163 -105 5 1775 195 227 119 15 chr1 156031121 156031188 -41164244 + L2a LINE L2 467 540 -2879 5 1775 548 356 116 38 chr1 156031407 156031880 -41163552 + L2a LINE L2 1219 1728 -1691 5 1775 481 363 46 11 chr1 156031912 156032193 -41163239 + L2a LINE L2 1966 2256 -1163 5 1775 967 250 60 8 chr1 156032193 156032243 -41163189 + L1_Mur3 LINE L1 4762 4810 -1070 5 1775 405 0 0 0 chr1 156032243 156032288 -41163144 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1775 967 250 60 8 chr1 156032288 156032487 -41162945 + L1_Mur3 LINE L1 4811 5024 -856 5 1775 1613 268 61 21 chr1 156032503 156032570 -41162862 + Lx8 LINE L1 5292 5366 -481 5 1775 188 0 74 0 chr1 156032570 156032597 -41162835 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5 1775 1613 266 65 20 chr1 156032597 156033085 -41162347 + Lx8 LINE L1 5367 5913 -1560 5 1775 441 66 0 0 chr1 156033085 156033146 -41162286 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1775 1117 44 22 0 chr1 156033592 156033729 -41161703 + B1_Mus2 SINE Alu 2 141 -6 5 1775 783 32 0 0 chr1 156033731 156033825 -41161607 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 1775 1241 275 78 99 chr1 156033831 156034117 -41161315 + Lx8 LINE L1 6043 6289 -1184 5 1775 3629 40 28 0 chr1 156034117 156034541 -41160891 - RLTR10C LTR ERVK 0 436 1 6 1775 1241 256 85 91 chr1 156034541 156034827 -41160605 + Lx8 LINE L1 6290 6602 -871 5 1775 395 280 135 80 chr1 156034878 156035126 -41160306 + L2a LINE L2 3095 3349 -77 5 1775 554 0 0 15 chr1 156035126 156035193 -41160239 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 6 1775 395 280 135 80 chr1 156035193 156035255 -41160177 + L2a LINE L2 3350 3422 -4 5 1775 300 294 165 28 chr1 156035323 156035718 -41159714 - L2 LINE L2 -803 2616 2168 6 1775 323 183 28 14 chr1 156036174 156036246 -41159186 + LTR16A LTR ERVL 71 143 -308 6 1775 197 275 30 81 chr1 156036607 156036706 -41158726 + L3 LINE CR1 3924 4017 -472 6 1775 510 109 10 19 chr1 156036774 156036792 -41158640 + (TCCCC)n Simple_repeat Simple_repeat 1 17 0 6 1775 1313 56 11 0 chr1 156036792 156036970 -41158462 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1775 510 109 10 19 chr1 156036970 156037054 -41158378 + (TCCCC)n Simple_repeat Simple_repeat 1 85 0 6 1775 1015 326 74 9 chr1 156038170 156038616 -41156816 - Lx8 LINE L1 -143 7330 6856 6 1775 844 246 88 9 chr1 156038615 156038841 -41156591 - Lx8 LINE L1 -917 6556 6313 6 1775 1179 172 15 5 chr1 156038898 156039102 -41156330 - MTD LTR MaLR -7 412 207 7 1775 467 248 55 28 chr1 156039139 156039284 -41156148 - B1_Mur1 SINE Alu 0 149 1 7 1775 668 119 9 0 chr1 156039288 156039397 -41156035 + (TTCC)n Simple_repeat Simple_repeat 4 113 0 7 1775 5842 112 9 15 chr1 156039407 156040268 -41155164 - Lx2A1 LINE L1 0 7008 6153 7 1775 222 37 0 0 chr1 156040372 156040399 -41155033 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 7 1775 452 189 0 0 chr1 156040404 156040499 -41154933 - RMER1B Other Other 0 1066 972 7 1775 2652 201 48 81 chr1 156040499 156041150 -41154282 - RMER1B Other Other -233 833 205 7 1775 846 218 46 11 chr1 156041154 156041350 -41154082 - MTD LTR MaLR -211 210 22 7 1775 540 0 0 0 chr1 156041350 156041410 -41154022 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1775 245 246 60 30 chr1 156041582 156041649 -41153783 + MIR3 SINE MIR 131 199 -9 7 1775 1277 212 125 27 chr1 156041906 156042202 -41153230 - ORR1D2 LTR MaLR -4 366 42 7 1775 213 62 20 40 chr1 156042337 156042387 -41153045 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 7 1775 816 159 29 7 chr1 156042511 156042650 -41152782 + B1_Mus1 SINE Alu 2 143 -5 8 1775 183 268 0 0 chr1 156043162 156043203 -41152229 + L3 LINE CR1 2727 2767 -1722 8 1775 961 137 7 14 chr1 156043362 156043510 -41151922 - B1_Mus1 SINE Alu -1 147 1 8 1775 311 350 89 0 chr1 156043515 156043638 -41151794 - MIRb SINE MIR -104 164 31 8 1775 180 0 0 0 chr1 156044337 156044357 -41151075 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1775 930 240 116 16 chr1 156044402 156044660 -41150772 - B4A SINE B4 -5 287 4 8 1775 4444 123 134 32 chr1 156045450 156046262 -41149170 + RMER17A2 LTR ERVK 1 895 -11 8 1775 978 205 26 16 chr1 156046269 156046462 -41148970 + B3 SINE B2 16 210 -6 8 1775 251 298 52 30 chr1 156046510 156046645 -41148787 + MIR SINE MIR 65 199 -69 8 1775 453 282 73 36 chr1 156047256 156047486 -41147946 - MIR SINE MIR -8 260 38 8 1775 204 250 0 36 chr1 156048605 156048688 -41146744 + GA-rich Low_complexity Low_complexity 2 81 0 9 1775 531 0 0 0 chr1 156049603 156049662 -41145770 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1775 219 284 92 54 chr1 156050150 156050280 -41145152 + MIRc SINE MIR 83 217 -51 9 1775 387 0 0 0 chr1 156054117 156054160 -41141272 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1775 410 292 0 22 chr1 156054224 156054406 -41141026 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1775 410 292 0 22 chr1 156054429 156054611 -41140821 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1775 180 0 0 0 chr1 156054634 156054654 -41140778 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1775 392 296 0 22 chr1 156054677 156054857 -41140575 + (TG)n Simple_repeat Simple_repeat 1 176 0 9 1775 198 0 0 0 chr1 156054880 156054902 -41140530 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1775 180 0 0 0 chr1 156054958 156054978 -41140454 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1775 410 292 0 22 chr1 156055001 156055183 -41140249 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1775 288 0 0 0 chr1 156055206 156055238 -41140194 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1775 252 0 0 0 chr1 156055335 156055363 -41140069 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1775 180 0 0 0 chr1 156055419 156055439 -41139993 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1775 206 232 0 18 chr1 156055462 156055519 -41139913 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1775 180 0 0 0 chr1 156055542 156055562 -41139870 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1775 952 225 72 21 chr1 156055752 156055988 -41139444 - B4A SINE B4 -44 248 1 9 1775 651 321 0 63 chr1 156057478 156057684 -41137748 + B3A SINE B2 6 198 0 9 1775 210 91 0 0 chr1 156057881 156057914 -41137518 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1775 793 296 112 43 chr1 156058830 156059134 -41136298 + MER21B LTR ERV1 487 811 -52 9 1775 241 333 69 38 chr1 156059237 156059396 -41136036 + L1MC LINE L1 4506 4669 -1477 1 1775 22 35 0 0 chr1 156060638 156060667 -41134765 + AT_rich Low_complexity Low_complexity 1 29 0 1 1775 288 295 69 39 chr1 156060758 156060929 -41134503 + L1M5 LINE L1 5643 5822 -342 1 1775 261 283 130 24 chr1 156061021 156061144 -41134288 - MLT1A LTR MaLR 0 374 239 1 1775 295 273 39 18 chr1 156061375 156061522 -41133910 + MLT1C LTR MaLR 256 388 -79 1 1775 1518 244 67 37 chr1 156061522 156061926 -41133506 + MTD LTR MaLR 1 416 -3 1 1775 480 35 0 0 chr1 156062640 156062698 -41132734 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1775 346 306 61 0 chr1 156063006 156063104 -41132328 - PB1D9 SINE Alu 0 120 17 1 1775 389 222 12 0 chr1 156063432 156063513 -41131919 - MTC LTR MaLR -339 82 1 1 1775 294 176 0 0 chr1 156063513 156063564 -41131868 - MTC-int LTR MaLR 0 1258 1208 1 1775 2215 201 5 29 chr1 156063595 156064006 -41131426 - MTC LTR MaLR -2 419 19 1 1775 22 35 0 0 chr1 156064084 156064113 -41131319 + AT_rich Low_complexity Low_complexity 1 29 0 1 1775 636 14 0 0 chr1 156064113 156064186 -41131246 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1775 492 343 67 33 chr1 156064197 156064363 -41131069 - L1MA4 LINE L1 -1579 6117 5938 1 1775 189 74 0 0 chr1 156064363 156064390 -41131042 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1775 1235 330 79 17 chr1 156064390 156065281 -41130151 - L1MA4 LINE L1 -1759 5937 4943 1 1775 390 264 8 8 chr1 156065277 156065399 -41130033 - L1_Mur1 LINE L1 -1000 4886 4765 1 1775 282 306 24 0 chr1 156065617 156065702 -41129730 + MER57D LTR ERV1 12 98 -313 1 1775 544 256 71 58 chr1 156065882 156066106 -41129326 - Lx8 LINE L1 -3 7470 7244 1 1775 1037 279 41 7 chr1 156066108 156066400 -41129032 + MER57D LTR ERV1 110 411 0 1 1775 447 108 0 0 chr1 156066506 156066571 -41128861 - URR1B DNA MER1_type 0 225 161 1 1775 1806 129 116 81 chr1 156066571 156066938 -41128494 - ORR1B1 LTR MaLR 0 394 15 1 1775 2644 136 25 2 chr1 156066938 156067374 -41128058 - ORR1B1-int LTR MaLR 0 1509 1064 1 1775 283 211 101 91 chr1 156067343 156067442 -41127990 - ORR1B1-int LTR MaLR -910 599 500 1 1775 749 134 8 8 chr1 156067429 156067557 -41127875 - ORR1B1-int LTR MaLR -123 1386 1259 1 1775 2576 173 20 26 chr1 156067551 156068055 -41127377 - ORR1B1-int LTR MaLR -1008 501 1 1 1775 2330 168 37 8 chr1 156068055 156068438 -41126994 - ORR1B1 LTR MaLR 0 394 1 1 1775 468 149 11 0 chr1 156068438 156068525 -41126907 - URR1B DNA MER1_type -60 165 78 1 1775 815 249 9 64 chr1 156068542 156068761 -41126671 + B4A SINE B4 17 223 -69 1 1775 278 167 17 0 chr1 156068765 156068825 -41126607 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1 1775 26 30 0 0 chr1 156068828 156068861 -41126571 + AT_rich Low_complexity Low_complexity 1 33 0 1 1775 904 251 52 0 chr1 156069173 156069364 -41126068 - B3 SINE B2 -13 203 3 1 1775 943 272 118 31 chr1 156069365 156069714 -41125718 + MTEb LTR MaLR 1 379 0 1 1775 450 309 126 53 chr1 156071583 156071846 -41123586 + ORR1E LTR MaLR 63 344 -15 1 1775 316 233 27 0 chr1 156071856 156071929 -41123503 - MTE-int LTR MaLR -1495 85 11 1 1775 1308 79 0 0 chr1 156072751 156072929 -41122503 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 1775 232 302 93 129 chr1 156073530 156073724 -41121708 + MLT1K LTR MaLR 401 587 -8 1 1775 2124 283 50 78 chr1 156074819 156075734 -41119698 - Lx8 LINE L1 -181 7292 6403 1 1775 435 19 0 0 chr1 156075785 156075837 -41119595 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1775 723 54 0 0 chr1 156075896 156075988 -41119444 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 1 1775 313 274 74 0 chr1 156076142 156076237 -41119195 + B1F SINE Alu 11 112 -37 1 1775 1899 132 17 0 chr1 156076237 156076532 -41118900 - Lx5 LINE L1 -1073 5977 5678 1 1775 419 244 33 0 chr1 156076628 156076718 -41118714 + B2_Mm2 SINE B2 4 96 -99 1 1775 941 265 117 152 chr1 156076749 156076924 -41118508 + Charlie5 DNA MER1_type 90 310 -2314 1 1775 3089 131 20 72 chr1 156076924 156077477 -41117955 + RLTR28 LTR ERVL 1 524 0 1 1775 941 265 117 152 chr1 156077477 156077821 -41117611 + Charlie5 DNA MER1_type 311 709 -1915 1 1775 782 317 17 57 chr1 156077821 156078122 -41117310 + B4 SINE B4 1 289 -3 1 1775 941 265 117 152 chr1 156078122 156078672 -41116760 + Charlie5 DNA MER1_type 710 1122 -1502 1 1775 1346 237 62 25 chr1 156078689 156079095 -41116337 + Charlie5 DNA MER1_type 1421 1841 -783 1 1775 1014 255 122 16 chr1 156079210 156079513 -41115919 + Lx8 LINE L1 7139 7473 0 1 1775 247 240 103 28 chr1 156079555 156079662 -41115770 + Charlie5 DNA MER1_type 1958 2072 -552 1 1775 504 0 0 0 chr1 156079671 156079727 -41115705 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1775 778 250 40 30 chr1 156080788 156080986 -41114446 + B4A SINE B4 1 200 -92 1 1775 531 78 0 0 chr1 156080986 156081063 -41114369 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1775 1909 206 52 21 chr1 156081611 156082025 -41113407 + MTC LTR MaLR 1 411 -10 1 1775 1040 104 51 7 chr1 156082204 156082381 -41113051 + RLTR13B4 LTR ERVK 1 189 -713 1 1775 3404 112 0 10 chr1 156082381 156082860 -41112572 + ETnERV3-int LTR ERVK 5307 5780 -28 1 1775 7445 55 38 2 chr1 156082874 156083771 -41111661 + RLTR13B3 LTR ERVK 1 929 0 1 1775 399 261 149 9 chr1 156083806 156084034 -41111398 + L1ME3A LINE L1 5517 5776 -464 1 1775 744 281 79 26 chr1 156084549 156084816 -41110616 + MLT1A0 LTR MaLR 39 319 -46 1 1775 481 285 64 20 chr1 156084837 156085041 -41110391 + L1ME3A LINE L1 5820 6032 -141 1 1775 3137 90 16 12 chr1 156085249 156085675 -41109757 - Lx2 LINE L1 0 6997 6570 1 1775 186 318 0 0 chr1 156086056 156086100 -41109332 - MIR SINE MIR -78 130 87 1 1775 748 276 34 10 chr1 156086124 156086329 -41109103 - B3 SINE B2 -6 210 1 1 1775 195 374 86 26 chr1 156087419 156087570 -41107862 + MIRb SINE MIR 84 243 -25 1 1775 592 360 106 30 chr1 156087592 156087999 -41107433 + LTR16A1 LTR ERVL 18 455 -1 1 1775 264 59 0 0 chr1 156089449 156089483 -41105949 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1775 38695 16 1 19 chr1 156090031 156095306 -41100126 + L1Md_A LINE L1 416 5586 -297 1 1775 9350 16 0 0 chr1 156095306 156096362 -41099070 + L1Md_A LINE L1 5587 6582 0 1 1775 1185 76 7 0 chr1 156096370 156096515 -41098917 + B1_Mus1 SINE Alu 1 146 -2 1 1775 1120 181 61 9 chr1 156096718 156096930 -41098502 - URR1B DNA MER1_type -2 223 1 1 1775 984 252 18 27 chr1 156097386 156097610 -41097822 + ID_B1 SINE B4 3 224 0 1 1775 21 0 0 0 chr1 156098261 156098282 -41097150 + AT_rich Low_complexity Low_complexity 1 21 0 1 1775 840 128 16 8 chr1 156098971 156099097 -41096335 + B1_Mur2 SINE Alu 22 148 -1 1 1775 312 70 0 0 chr1 156099189 156099232 -41096200 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1775 1208 219 5 0 chr1 156099238 156099434 -41095998 - B3 SINE B2 -18 198 2 1 1775 2288 124 86 3 chr1 156099439 156099788 -41095644 + ORR1C1 LTR MaLR 1 378 0 1 1775 540 0 0 0 chr1 156099834 156099894 -41095538 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1775 1350 224 70 29 chr1 156099927 156100340 -41095092 - L2 LINE L2 -1755 1664 1235 1 1775 279 338 11 79 chr1 156100772 156100929 -41094503 - MIRb SINE MIR -134 142 2 1 1775 457 167 10 10 chr1 156100997 156101100 -41094332 + CT-rich Low_complexity Low_complexity 2 104 0 1 1775 543 283 27 14 chr1 156101186 156101333 -41094099 - B3A SINE B2 0 198 50 1 1775 1821 176 92 13 chr1 156101331 156101712 -41093720 - MTD LTR MaLR -8 411 1 1 1775 239 186 0 0 chr1 156101718 156101761 -41093671 - B3A SINE B2 -154 44 2 1 1775 1179 62 0 0 chr1 156102552 156102713 -41092719 + (GGAA)n Simple_repeat Simple_repeat 4 164 0 1 1775 447 19 0 0 chr1 156102903 156102955 -41092477 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1775 240 35 0 0 chr1 156103887 156103916 -41091516 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1775 239 229 9 94 chr1 156104140 156104246 -41091186 - Kanga11a DNA Tc2 -618 352 256 1 1775 27 92 0 0 chr1 156104663 156104739 -41090693 + AT_rich Low_complexity Low_complexity 1 76 0 1 1775 367 295 91 32 chr1 156104968 156105122 -41090310 - Lx8 LINE L1 -1553 5920 5758 1 1775 208 303 30 15 chr1 156105200 156105267 -41090165 - MIR3 SINE MIR -48 160 93 1 1775 672 48 0 0 chr1 156106218 156106302 -41089130 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1776 1207 140 5 0 chr1 156107937 156108123 -41087309 - ORR1D1 LTR MaLR -1 373 187 1 1776 416 293 201 30 chr1 156108517 156108851 -41086581 - L1MCa LINE L1 -6105 403 13 1 1776 346 236 0 27 chr1 156109207 156109281 -41086151 - PB1D7 SINE Alu -1 119 48 1 1776 819 171 0 21 chr1 156109962 156110105 -41085327 - B1_Mus1 SINE Alu -3 145 6 1 1776 222 354 12 0 chr1 156110269 156110351 -41085081 + MIRc SINE MIR 83 165 -103 1 1776 687 25 0 0 chr1 156111403 156111484 -41083948 + (TCC)n Simple_repeat Simple_repeat 2 82 0 1 1776 235 267 13 13 chr1 156112779 156112855 -41082577 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 1 1776 432 0 0 0 chr1 156112972 156113020 -41082412 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1 1776 411 352 47 0 chr1 156113020 156113148 -41082284 - B1F SINE Alu -12 137 4 1 1776 228 366 0 36 chr1 156113342 156113467 -41081965 - L1M5 LINE L1 -603 5576 5456 1 1776 529 319 253 19 chr1 156113574 156114245 -41081187 - L1M5 LINE L1 -850 5296 4469 1 1776 253 264 155 92 chr1 156114245 156114387 -41081045 - MIRb SINE MIR -31 237 87 1 1776 702 295 119 12 chr1 156114643 156114887 -41080545 + B4 SINE B4 5 274 -18 1 1776 2539 90 12 6 chr1 156115009 156115333 -41080099 - ORR1A3 LTR MaLR 0 326 1 1 1776 604 295 58 0 chr1 156115453 156115592 -41079840 + B1_Mur1 SINE Alu 3 149 0 1 1776 687 35 0 0 chr1 156115921 156116007 -41079425 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 1 1776 25 0 0 0 chr1 156116078 156116103 -41079329 + AT_rich Low_complexity Low_complexity 1 25 0 1 1776 1460 309 71 67 chr1 156117386 156117869 -41077563 - Lx7 LINE L1 -1794 5902 5355 1 1776 576 0 0 0 chr1 156117869 156117933 -41077499 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1776 1460 313 95 80 chr1 156117933 156119117 -41076315 - Lx7 LINE L1 -493 5354 4183 1 1776 3997 151 42 9 chr1 156120185 156120879 -41074553 - Lx5 LINE L1 -428 6622 5906 1 1776 1690 184 118 14 chr1 156120882 156121121 -41074311 + Lx5 LINE L1 6667 6921 -129 1 1776 558 0 0 0 chr1 156121121 156121183 -41074249 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1776 1690 184 118 14 chr1 156121183 156121291 -41074141 + Lx5 LINE L1 6922 7050 0 1 1776 277 316 141 50 chr1 156121464 156121784 -41073648 + L1MEg LINE L1 399 747 -5337 1 1776 241 295 96 53 chr1 156121893 156122194 -41073238 + L1MEg LINE L1 928 1241 -4843 1 1776 4263 34 0 0 chr1 156122435 156122969 -41072463 - L1Md_F2 LINE L1 0 6582 6097 1 1776 280 328 70 62 chr1 156123315 156123572 -41071860 + Kanga11a DNA Tc2 113 371 -599 1 1776 304 341 35 21 chr1 156123707 156123848 -41071584 + Kanga11a DNA Tc2 583 725 -245 1 1776 306 98 0 0 chr1 156124264 156124315 -41071117 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1776 6363 105 13 1 chr1 156124999 156125846 -41069586 - Lx LINE L1 -4 6650 5794 1 1776 28 29 0 0 chr1 156126122 156126157 -41069275 + AT_rich Low_complexity Low_complexity 1 35 0 1 1776 386 338 78 16 chr1 156126466 156126788 -41068644 + L1MB7 LINE L1 5554 5895 -289 2 1776 192 125 0 0 chr1 156126788 156126820 -41068612 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1776 262 304 109 40 chr1 156126884 156127086 -41068346 + L1MB7 LINE L1 5911 6126 -52 2 1776 669 114 0 0 chr1 156127633 156127756 -41067676 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 2 1776 583 271 145 55 chr1 156128103 156128482 -41066950 - Charlie1b DNA MER1_type 0 523 111 2 1776 204 336 44 9 chr1 156129740 156129854 -41065578 - MIR SINE MIR -71 191 74 2 1776 231 278 27 40 chr1 156130512 156130587 -41064845 + MLT1F2 LTR MaLR 187 260 -300 2 1776 1671 296 118 67 chr1 156131051 156132411 -41063021 - HAL1 LINE L1 -107 2400 941 2 1776 426 20 0 0 chr1 156132411 156132462 -41062970 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1776 495 0 0 0 chr1 156132462 156132516 -41062916 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1776 1671 296 118 67 chr1 156132516 156132749 -41062683 - HAL1 LINE L1 -1567 940 726 2 1776 390 316 87 5 chr1 156133105 156133312 -41062120 - HAL1 LINE L1 -2281 226 3 2 1776 248 344 32 32 chr1 156133465 156133558 -41061874 + L2c LINE L2 3267 3359 -28 2 1776 534 31 0 0 chr1 156134867 156134931 -41060501 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1776 286 281 24 35 chr1 156135292 156135377 -41060055 + MIRb SINE MIR 91 174 -94 2 1776 226 267 110 80 chr1 156135745 156135908 -41059524 + MIRb SINE MIR 93 260 -8 2 1776 247 345 20 48 chr1 156135998 156136144 -41059288 + L3 LINE CR1 3642 3783 -706 2 1776 371 353 129 34 chr1 156136180 156136529 -41058903 + L3 LINE CR1 3895 4276 -213 2 1776 578 267 60 36 chr1 156136622 156136789 -41058643 - MER63A DNA AcHobo 0 210 40 2 1776 225 311 10 72 chr1 156136934 156137031 -41058401 - L2b LINE L2 -271 3104 3014 2 1776 339 316 80 52 chr1 156137604 156137892 -41057540 + B4 SINE B4 2 281 -11 2 1776 672 98 0 0 chr1 156137916 156138018 -41057414 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1776 690 268 58 32 chr1 156138190 156138379 -41057053 + B3A SINE B2 1 194 -4 2 1776 812 261 107 125 chr1 156140890 156141170 -41054262 - B4A SINE B4 -15 277 3 2 1776 581 276 148 9 chr1 156141178 156141408 -41054024 + L1MA9 LINE L1 6049 6310 -2 2 1776 414 282 0 78 chr1 156141810 156142014 -41053418 - L1_Rod LINE L1 -4335 1512 1325 2 1776 405 354 11 17 chr1 156142927 156143105 -41052327 - MER5B DNA MER1_type -1 177 1 2 1776 1198 289 109 21 chr1 156143509 156144022 -41051410 + MER74A LTR ERVL 1 558 0 2 1776 251 297 7 123 chr1 156145560 156145706 -41049726 + L2c LINE L2 3259 3387 0 2 1776 569 267 77 16 chr1 156146164 156146347 -41049085 - B3A SINE B2 -4 194 1 2 1776 1149 97 0 0 chr1 156147671 156147811 -41047621 + B1_Mus1 SINE Alu 2 141 -7 2 1776 696 64 0 0 chr1 156147811 156147905 -41047527 + (CCA)n Simple_repeat Simple_repeat 1 94 0 2 1776 432 0 0 0 chr1 156147909 156147957 -41047475 + (CAA)n Simple_repeat Simple_repeat 1 48 0 2 1776 990 269 97 27 chr1 156148264 156148666 -41046766 - L1MA4 LINE L1 -274 6029 5600 2 1776 678 289 0 31 chr1 156148715 156148876 -41046556 - RSINE1 SINE B4 -7 158 3 2 1776 427 246 63 23 chr1 156148876 156149020 -41046412 - L1MA4 LINE L1 -582 5607 5461 2 1776 1337 148 0 9 chr1 156149020 156149238 -41046194 - L1_Mur2 LINE L1 -744 5133 4918 2 1776 828 186 0 0 chr1 156149239 156149379 -41046053 + Lx5 LINE L1 6302 6441 -609 2 1776 3157 169 17 42 chr1 156149403 156149977 -41045455 - Lx2B LINE L1 -4 6996 6437 2 1776 435 169 0 0 chr1 156150010 156150087 -41045345 - RMER19C LTR ERVK 0 611 535 2 1776 1759 161 132 0 chr1 156150103 156150420 -41045012 - RMER19C LTR ERVK -252 359 1 2 1776 1152 258 124 14 chr1 156150424 156150861 -41044571 - L1MA4 LINE L1 -879 5264 4780 2 1776 1263 193 4 21 chr1 156150888 156151126 -41044306 - MTC LTR MaLR -1 420 187 2 1776 237 252 24 73 chr1 156151191 156151315 -41044117 - L1MA4 LINE L1 -1607 4533 4416 2 1776 270 291 90 9 chr1 156151428 156151539 -41043893 - L1MA4 LINE L1 -2413 3730 3611 2 1776 357 82 0 0 chr1 156151549 156151598 -41043834 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1776 507 246 37 67 chr1 156151617 156151752 -41043680 - RSINE1 SINE B4 -23 142 12 2 1776 387 310 76 21 chr1 156151774 156151919 -41043513 - B4 SINE B4 -96 196 44 2 1776 245 270 11 11 chr1 156151958 156152048 -41043384 - L1MA4 LINE L1 -2647 3496 3407 2 1776 239 211 35 0 chr1 156152102 156152159 -41043273 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 2 1776 226 308 144 0 chr1 156152769 156152873 -41042559 - Tigger5 DNA MER2_type -2248 158 40 2 1776 1280 109 16 16 chr1 156153405 156153592 -41041840 - B2_Mm1t SINE B2 -6 187 1 2 1776 24 0 0 0 chr1 156154348 156154372 -41041060 + AT_rich Low_complexity Low_complexity 1 24 0 2 1776 288 150 0 0 chr1 156155288 156155346 -41040086 + MIRb SINE MIR 205 262 0 2 1776 432 0 0 0 chr1 156155731 156155779 -41039653 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 2 1776 607 185 66 7 chr1 156156674 156156810 -41038622 - Lx6 LINE L1 0 7460 7317 2 1776 441 0 0 0 chr1 156156811 156156860 -41038572 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1776 324 183 0 0 chr1 156156866 156156926 -41038506 - Lx6 LINE L1 -188 7272 7213 2 1776 295 262 0 0 chr1 156156931 156156992 -41038440 - Lx7 LINE L1 -713 6983 6923 2 1776 1941 264 30 22 chr1 156157138 156157676 -41037756 - MER34A LTR ERV1 -18 553 12 2 1776 1347 225 147 23 chr1 156158097 156158493 -41036939 - RCHARR1 DNA MER1_type -498 476 32 2 1776 660 155 0 0 chr1 156158548 156158645 -41036787 - 5S rRNA rRNA -12 109 13 2 1776 2702 97 0 34 chr1 156158645 156159030 -41036402 + L1_Mus4 LINE L1 6259 6630 -6 2 1776 186 133 0 0 chr1 156159110 156159140 -41036292 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 2 1776 256 259 45 45 chr1 156159601 156159690 -41035742 - L2a LINE L2 0 3426 3338 2 1776 281 128 21 0 chr1 156160291 156160338 -41035094 + U2 snRNA snRNA 1 48 -140 2 1776 264 347 94 35 chr1 156160819 156161022 -41034410 - L2 LINE L2 -695 2724 2510 2 1776 951 144 222 0 chr1 156161073 156161253 -41034179 + URR1B DNA MER1_type 4 223 -2 2 1776 341 394 5 21 chr1 156161382 156161574 -41033858 + MT2A LTR ERVL 207 395 -138 2 1776 407 288 103 49 chr1 156161704 156161927 -41033505 - MIR SINE MIR -21 241 7 2 1776 830 331 48 22 chr1 156163383 156163880 -41031552 - L1ME2 LINE L1 -280 5884 5375 2 1776 701 284 0 24 chr1 156163996 156164162 -41031270 - RSINE1 SINE B4 0 165 4 2 1776 1035 52 29 0 chr1 156164170 156164306 -41031126 - L1_Mus2 LINE L1 0 6566 6427 2 1776 315 0 0 0 chr1 156164380 156164415 -41031017 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1776 550 337 69 56 chr1 156164494 156165103 -41030329 - L1ME2 LINE L1 -1213 4933 4317 2 1776 392 347 32 26 chr1 156165168 156165322 -41030110 - B3A SINE B2 -17 181 27 2 1776 405 0 0 0 chr1 156165326 156165371 -41030061 + (TTAA)n Simple_repeat Simple_repeat 4 48 0 2 1776 7098 103 124 14 chr1 156165371 156166455 -41028977 - Lx3A LINE L1 -16 6965 5762 2 1776 8249 77 14 3 chr1 156166452 156167071 -41028361 + L1_Mur1 LINE L1 4624 5256 -630 2 1776 4667 53 2 2 chr1 156167071 156167655 -41027777 + L1Md_F2 LINE L1 5987 6570 -12 2 1776 8249 77 14 3 chr1 156167655 156168208 -41027224 + L1_Mur1 LINE L1 5257 5809 -77 2 1776 239 150 0 0 chr1 156168209 156168249 -41027183 - B3A SINE B2 -158 40 1 2 1776 466 279 70 0 chr1 156168320 156168492 -41026940 - L1M4c LINE L1 -1909 4473 4290 2 1776 35 71 0 0 chr1 156168513 156168583 -41026849 + AT_rich Low_complexity Low_complexity 1 70 0 2 1776 296 215 513 84 chr1 156168632 156168823 -41026609 - Lx9 LINE L1 -75 7569 7297 2 1776 353 232 183 28 chr1 156170825 156171113 -41024319 - L1M4c LINE L1 -4470 1993 1668 2 1776 374 269 208 12 chr1 156171133 156171386 -41024046 - L1M4c LINE L1 -4830 1633 1277 2 1776 329 312 15 15 chr1 156171537 156171667 -41023765 - L1M4c LINE L1 -5659 804 675 2 1776 333 0 0 0 chr1 156171762 156171799 -41023633 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1776 330 363 64 104 chr1 156171898 156172178 -41023254 - L1M4c LINE L1 -6029 434 166 2 1776 357 215 127 0 chr1 156172215 156172294 -41023138 - B3 SINE B2 -14 202 114 2 1776 372 22 0 0 chr1 156173683 156173728 -41021704 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1776 809 364 44 30 chr1 156174551 156174987 -41020445 - LTR16B2 LTR ERVL -3 459 18 2 1776 477 0 0 0 chr1 156175002 156175055 -41020377 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1776 640 252 76 0 chr1 156175063 156175194 -41020238 - B3A SINE B2 -56 142 2 2 1776 8005 30 1 0 chr1 156175242 156176430 -41019002 - L1Md_A LINE L1 0 6582 5394 2 1776 222 62 0 0 chr1 156176449 156176481 -41018951 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1776 2715 184 66 6 chr1 156176489 156177031 -41018401 + RMER15 LTR ERVL 1 575 0 2 1776 963 282 76 16 chr1 156177034 156177337 -41018095 - ORR1E LTR MaLR -37 322 2 2 1776 396 244 203 59 chr1 156177891 156178113 -41017319 - MLT1C LTR MaLR -46 421 168 2 1776 371 282 33 80 chr1 156178129 156178403 -41017029 - L1MB2 LINE L1 -2 6169 5909 2 1776 513 243 204 26 chr1 156178418 156178442 -41016990 - B4A SINE B4 -44 248 225 2 1776 617 0 14 0 chr1 156178442 156178515 -41016917 + (TATG)n Simple_repeat Simple_repeat 2 75 0 2 1776 513 243 204 26 chr1 156178515 156178642 -41016790 - B4A SINE B4 -68 224 71 2 1776 252 211 81 40 chr1 156178709 156178783 -41016649 + MLT1B LTR MaLR 36 112 -278 2 1776 243 239 0 107 chr1 156178772 156178847 -41016585 + B4 SINE B4 79 145 -147 2 1776 311 224 45 45 chr1 156178900 156178989 -41016443 - MLT1C LTR MaLR -275 115 27 2 1776 820 235 131 9 chr1 156179012 156179356 -41016076 - L1MC4a LINE L1 -244 7798 7413 2 1776 431 227 125 0 chr1 156179471 156179599 -41015833 - L1MC4a LINE L1 -636 7406 7263 2 1776 7042 144 39 36 chr1 156179658 156180318 -41015114 + Lx4A LINE L1 5764 6443 -615 2 1776 1224 42 0 0 chr1 156180318 156180460 -41014972 - B1_Mus2 SINE Alu -5 142 1 2 1776 7042 144 39 36 chr1 156180460 156180769 -41014663 + Lx4A LINE L1 6444 6760 -298 2 1776 486 0 0 0 chr1 156180769 156180823 -41014609 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1776 7042 144 39 36 chr1 156180823 156181143 -41014289 + Lx4A LINE L1 6761 7058 0 2 1776 236 218 0 18 chr1 156181212 156181268 -41014164 - B3A SINE B2 -143 55 1 2 1776 421 300 133 30 chr1 156181306 156181705 -41013727 - L1MC4a LINE L1 -665 7217 6778 2 1776 540 0 0 0 chr1 156181710 156181770 -41013662 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1776 2827 58 8 8 chr1 156181770 156182137 -41013295 + L1_Mus2 LINE L1 6194 6560 -6 2 1776 456 51 0 0 chr1 156182245 156182304 -41013128 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1776 888 342 89 38 chr1 156182347 156183103 -41012329 - L1MC4a LINE L1 -1294 6588 5747 2 1776 2426 171 191 35 chr1 156183103 156183740 -41011692 - RMER19A LTR ERVK 0 737 1 2 1776 370 341 68 116 chr1 156183740 156184152 -41011280 - L1MC4a LINE L1 -2136 5746 5357 2 1776 276 277 49 55 chr1 156184424 156184588 -41010844 - RMER15-int LTR ERVL -673 4326 4164 2 1776 30 77 0 0 chr1 156185204 156185269 -41010163 + AT_rich Low_complexity Low_complexity 1 65 0 2 1776 1948 163 10 86 chr1 156185373 156185756 -41009676 - ORR1B1 LTR MaLR 0 394 41 2 1776 351 274 32 0 chr1 156185849 156185944 -41009488 - Lx7 LINE L1 -387 7309 7212 2 1776 29882 82 21 19 chr1 156186119 156192163 -41003269 - L1Md_F2 LINE L1 -19 6563 505 3 1776 366 107 0 0 chr1 156192223 156192279 -41003153 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1776 231 224 30 0 chr1 156192299 156192366 -41003066 + L1M1 LINE L1 5828 5896 -404 3 1776 313 281 19 94 chr1 156192864 156193027 -41002405 - MLT1C LTR MaLR -110 280 137 3 1776 661 235 153 0 chr1 156193091 156193274 -41002158 - B3 SINE B2 -5 211 1 3 1776 1255 274 81 21 chr1 156193393 156193925 -41001507 - L1MA5 LINE L1 -295 6241 5678 3 1776 1684 176 85 58 chr1 156193996 156194406 -41001026 + MTC LTR MaLR 1 421 0 3 1776 4786 189 86 75 chr1 156194406 156195641 -40999791 + MTC-int LTR MaLR 1 1248 -10 3 1776 1567 186 129 6 chr1 156195621 156195977 -40999455 + MTC LTR MaLR 12 411 -8 3 1776 2173 176 64 171 chr1 156196009 156196777 -40998655 + RMER6C LTR ERVK 1 686 -4 3 1776 7249 108 6 6 chr1 156196786 156198552 -40996880 - L1_Mus3 LINE L1 -14 6624 4859 3 1776 837 96 0 8 chr1 156198561 156198687 -40996745 + L1_Mus3 LINE L1 4726 4850 -1033 3 1776 794 300 88 34 chr1 156198687 156198949 -40996483 - ORR1E LTR MaLR -83 276 1 3 1776 340 232 127 14 chr1 156198950 156199116 -40996316 - L1MA5 LINE L1 -852 5684 5498 3 1776 279 197 27 87 chr1 156199117 156199176 -40996256 + RMER17A2 LTR ERVK 256 304 -602 3 1776 945 0 0 0 chr1 156199176 156199281 -40996151 + (TTC)n Simple_repeat Simple_repeat 3 107 0 3 1776 279 197 27 87 chr1 156199281 156199371 -40996061 + RMER17A2 LTR ERVK 305 396 -510 3 1776 613 306 68 0 chr1 156199396 156199542 -40995890 - L1MA5 LINE L1 -1007 5372 5210 3 1776 474 18 0 0 chr1 156199542 156199597 -40995835 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1776 613 306 68 0 chr1 156199597 156199744 -40995688 - L1MA5 LINE L1 -1170 5209 5060 3 1776 584 248 35 35 chr1 156199742 156200001 -40995431 - L1MA5 LINE L1 -1459 4920 4662 3 1776 722 217 63 90 chr1 156200016 156200172 -40995260 + Lx8 LINE L1 7181 7331 -142 3 1776 210 118 0 0 chr1 156200172 156200206 -40995226 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 3 1776 722 217 63 90 chr1 156200206 156200348 -40995084 + Lx8 LINE L1 7332 7471 -2 3 1776 253 309 59 0 chr1 156200406 156200474 -40994958 - PB1D7 SINE Alu 0 120 49 3 1776 1680 215 75 22 chr1 156200512 156200912 -40994520 + MTC LTR MaLR 1 421 0 3 1776 330 311 91 19 chr1 156200912 156201066 -40994366 - L1MA5 LINE L1 -2656 3723 3559 3 1776 1310 167 14 0 chr1 156201165 156201387 -40994045 - URR1B DNA MER1_type 0 225 1 3 1776 334 228 100 32 chr1 156201392 156201582 -40993850 - L1MA5 LINE L1 -2901 3478 3276 3 1776 2375 93 0 63 chr1 156201583 156201963 -40993469 - Lx LINE L1 -7 6647 6292 3 1776 3793 211 82 11 chr1 156202019 156202912 -40992520 - Lx6 LINE L1 -5 7455 6500 3 1776 1791 192 23 15 chr1 156202951 156203294 -40992138 - ORR1B1 LTR MaLR -8 386 41 3 1776 7634 171 54 28 chr1 156203301 156205473 -40989959 - Lx6 LINE L1 -973 6487 4250 3 1776 4664 168 24 61 chr1 156205471 156206582 -40988850 - Lx6 LINE L1 -3177 2703 1634 3 1776 201 132 0 0 chr1 156206643 156206681 -40988751 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1776 713 261 31 26 chr1 156206811 156207125 -40988307 + L1_Rod LINE L1 5394 5686 -161 3 1776 1259 32 0 6 chr1 156207408 156207565 -40987867 + (TTCTC)n Simple_repeat Simple_repeat 5 160 0 3 1776 333 319 126 38 chr1 156207607 156207845 -40987587 - L1MA5 LINE L1 -5078 1306 1048 3 1776 518 238 94 41 chr1 156208012 156208052 -40987380 - L1MA5 LINE L1 -6174 210 168 3 1776 1627 218 99 3 chr1 156208052 156208434 -40986998 + MTD LTR MaLR 1 419 0 3 1776 518 238 94 41 chr1 156208434 156208564 -40986868 - L1MA5 LINE L1 -6217 167 31 3 1776 955 233 195 9 chr1 156208575 156209037 -40986395 - L1MEc LINE L1 -2291 4028 3459 3 1776 293 304 26 17 chr1 156209809 156209926 -40985506 - MLT2B2 LTR ERVL -397 118 1 3 1776 534 298 146 39 chr1 156209926 156210913 -40984519 - L1MEc LINE L1 -3373 2946 1854 3 1776 884 294 68 5 chr1 156211440 156211936 -40983496 - Lx7 LINE L1 -115 7358 6796 3 1776 353 314 151 13 chr1 156212263 156212502 -40982930 - L1MA4 LINE L1 -360 5940 5669 3 1776 1176 271 27 49 chr1 156212510 156212921 -40982511 - Lx8 LINE L1 -9 7464 7063 3 1776 1111 317 143 2 chr1 156212926 156213491 -40981941 - Lx8 LINE L1 -514 6959 6315 3 1776 1292 257 69 16 chr1 156213502 156214297 -40981135 - L1MA4 LINE L1 -623 5677 4846 3 1776 353 178 39 29 chr1 156214368 156214472 -40980960 - Lx LINE L1 -7 6647 6543 3 1776 354 78 0 238 chr1 156214472 156214556 -40980876 + RLTR28 LTR ERVL 459 522 -2 3 1776 1067 290 63 48 chr1 156214572 156215009 -40980423 - L1MA4 LINE L1 -1652 4491 4050 3 1776 1230 54 0 0 chr1 156215009 156215156 -40980276 - B1_Mm SINE Alu 0 147 1 3 1776 1067 290 63 48 chr1 156215156 156215431 -40980001 - L1MA4 LINE L1 -2094 4049 3768 3 1776 754 284 170 15 chr1 156215434 156216297 -40979135 - L1MA4 LINE L1 -2590 3553 2557 3 1776 271 330 30 0 chr1 156216518 156216618 -40978814 - Lx8 LINE L1 -151 7322 7220 3 1776 686 314 67 19 chr1 156216642 156216911 -40978521 - Lx8 LINE L1 -454 7019 6738 3 1776 777 224 108 15 chr1 156217034 156217229 -40978203 - B3 SINE B2 -2 214 2 3 1776 521 227 36 9 chr1 156217240 156217351 -40978081 - B4A SINE B4 -64 228 115 3 1776 260 65 43 0 chr1 156217793 156217839 -40977593 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 3 1776 1171 276 83 18 chr1 156217969 156218523 -40976909 - L1MA4A LINE L1 -374 5929 5340 3 1776 393 22 0 0 chr1 156218698 156218744 -40976688 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1776 2041 24 0 0 chr1 156218812 156219058 -40976374 + L1Md_T LINE L1 5341 5586 -297 3 1776 8001 56 0 1 chr1 156219058 156220055 -40975377 + L1Md_T LINE L1 5587 6582 0 3 1776 1738 246 9 19 chr1 156220064 156220491 -40974941 - Lx7 LINE L1 -462 7234 6812 3 1776 502 246 66 51 chr1 156220572 156220709 -40974723 - RSINE1 SINE B4 0 165 27 3 1776 369 327 200 40 chr1 156221000 156221455 -40973977 - L1MEc LINE L1 -5458 942 415 3 1776 3724 164 69 32 chr1 156221660 156222354 -40973078 - Lx5 LINE L1 -4 7046 6327 3 1776 1921 122 16 32 chr1 156222350 156222662 -40972770 + Lx5 LINE L1 5290 5596 -281 3 1776 334 164 0 0 chr1 156222654 156222709 -40972723 + Lx5 LINE L1 6151 6205 -845 3 1776 680 124 38 0 chr1 156222703 156222808 -40972624 - L1_Mur1 LINE L1 -211 5675 5567 3 1776 663 240 176 17 chr1 156223883 156224116 -40971316 + Lx8 LINE L1 6184 6453 -1020 3 1776 2463 262 113 54 chr1 156224126 156224370 -40971062 + Lx8 LINE L1 6594 6910 -734 3 1776 3040 41 3 0 chr1 156224370 156224735 -40970697 - L1Md_F2 LINE L1 -3 6579 6214 3 1776 2463 257 107 60 chr1 156224735 156225345 -40970087 + Lx8 LINE L1 6798 7451 -22 3 1776 494 215 21 0 chr1 156225351 156225444 -40969988 - B1_Mm SINE Alu -52 95 1 3 1776 576 341 65 54 chr1 156225932 156226208 -40969224 + B4A SINE B4 14 292 0 3 1776 661 242 19 167 chr1 156226601 156226859 -40968573 + ID_B1 SINE B4 4 223 -1 3 1776 571 229 124 16 chr1 156227251 156227437 -40967995 - B3 SINE B2 -10 206 1 3 1776 336 263 141 32 chr1 156227687 156228006 -40967426 + L1M5 LINE L1 4585 4936 -1210 3 1776 476 301 17 22 chr1 156228340 156228520 -40966912 + MTEb LTR MaLR 201 379 0 3 1776 3137 66 2 10 chr1 156229644 156230043 -40965389 + MTA_Mm LTR MaLR 1 396 0 3 1776 294 283 43 11 chr1 156232181 156232274 -40963158 + ID_B1 SINE B4 96 191 -33 3 1776 334 265 0 0 chr1 156232290 156232358 -40963074 + ID4 SINE ID 7 74 -9 3 1776 368 275 130 33 chr1 156232605 156232729 -40962703 - RSINE1 SINE B4 -28 137 1 3 1776 392 301 60 34 chr1 156234026 156234143 -40961289 - B1F SINE Alu -11 138 19 3 1776 236 267 0 45 chr1 156234861 156234971 -40960461 + T-rich Low_complexity Low_complexity 2 106 0 3 1776 7669 67 11 4 chr1 156234976 156236366 -40959066 - L1_Mus2 LINE L1 -6 6560 5161 3 1776 370 308 9 0 chr1 156236434 156236541 -40958891 - PB1D10 SINE Alu -1 116 9 3 1776 22 0 0 0 chr1 156237589 156237611 -40957821 + AT_rich Low_complexity Low_complexity 1 22 0 3 1777 23 0 0 0 chr1 156239493 156239516 -40955916 + AT_rich Low_complexity Low_complexity 1 23 0 3 1777 183 42 0 0 chr1 156241718 156241742 -40953690 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1777 204 158 0 0 chr1 156243010 156243048 -40952384 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1777 1097 185 86 34 chr1 156246486 156246758 -40948674 - RLTR20C LTR ERVK 0 541 255 3 1777 1114 102 0 0 chr1 156246758 156246905 -40948527 - B1_Mus2 SINE Alu 0 147 1 3 1777 1062 278 43 54 chr1 156246905 156247024 -40948408 - RLTR20C LTR ERVK -276 265 154 3 1777 6529 60 28 0 chr1 156247024 156247839 -40947593 - L1_Mus2 LINE L1 -94 6472 5635 3 1777 820 206 26 39 chr1 156247842 156247923 -40947509 - RLTR20A LTR ERVK -268 266 184 3 1777 180 0 0 0 chr1 156247923 156247943 -40947489 + (TCC)n Simple_repeat Simple_repeat 3 22 0 3 1777 820 188 23 34 chr1 156247943 156248061 -40947371 - RLTR20A LTR ERVK -358 183 62 3 1777 482 292 154 24 chr1 156249409 156249655 -40945777 + MLT1A0 LTR MaLR 11 288 -77 3 1777 459 263 35 17 chr1 156250547 156250663 -40944769 - B4A SINE B4 -173 119 2 3 1777 243 0 0 0 chr1 156253899 156253926 -40941506 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1777 251 0 0 56 chr1 156253928 156253964 -40941468 + (CAT)n Simple_repeat Simple_repeat 1 34 0 3 1777 441 0 0 0 chr1 156256133 156256182 -40939250 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 3 1777 29 47 0 0 chr1 156256550 156256593 -40938839 + AT_rich Low_complexity Low_complexity 1 43 0 3 1777 219 276 13 26 chr1 156263295 156263373 -40932059 + G-rich Low_complexity Low_complexity 2 78 0 3 1777 203 232 0 55 chr1 156266795 156266868 -40928564 - MIRb SINE MIR -63 205 137 3 1777 485 330 25 80 chr1 156267361 156267598 -40927834 - MER58A DNA MER1_type 0 224 1 3 1777 925 283 22 7 chr1 156269257 156269531 -40925901 - MER58B DNA MER1_type -44 297 20 3 1777 239 329 12 0 chr1 156270814 156270896 -40924536 + L2b LINE L2 3291 3373 -2 3 1777 195 303 0 15 chr1 156270913 156270980 -40924452 - MIR SINE MIR -104 104 39 3 1777 198 294 22 45 chr1 156271242 156271331 -40924101 + L2a LINE L2 3340 3426 0 3 1777 379 295 138 35 chr1 156271608 156271840 -40923592 - B4A SINE B4 -35 257 2 3 1777 189 0 0 0 chr1 156272112 156272133 -40923299 + (CAG)n Simple_repeat Simple_repeat 2 22 0 3 1777 3490 83 0 17 chr1 156273852 156274331 -40921101 - L1Md_F2 LINE L1 0 6582 6112 3 1777 216 263 0 0 chr1 156275090 156275147 -40920285 + GA-rich Low_complexity Low_complexity 1 57 0 3 1777 279 212 0 0 chr1 156275169 156275249 -40920183 + GA-rich Low_complexity Low_complexity 2 81 0 3 1777 3333 187 28 28 chr1 156276620 156277414 -40918018 - ORR1B2-int LTR MaLR -701 808 15 3 1777 1546 154 164 34 chr1 156277423 156277746 -40917686 - ORR1B2 LTR MaLR -2 365 1 3 1777 5021 169 40 22 chr1 156280555 156280953 -40914479 - RMER19B LTR ERVK 0 902 494 3 1777 342 0 0 0 chr1 156280953 156280991 -40914441 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1777 5021 169 40 22 chr1 156280991 156281479 -40913953 - RMER19B LTR ERVK -409 493 2 3 1777 25 0 0 0 chr1 156282230 156282255 -40913177 + AT_rich Low_complexity Low_complexity 1 25 0 3 1777 21 36 0 0 chr1 156282613 156282641 -40912791 + AT_rich Low_complexity Low_complexity 1 28 0 3 1777 26 30 0 0 chr1 156282686 156282719 -40912713 + AT_rich Low_complexity Low_complexity 1 33 0 3 1777 378 0 0 0 chr1 156282996 156283038 -40912394 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1777 192 77 0 0 chr1 156284741 156284767 -40910665 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1777 209 350 0 0 chr1 156285535 156285595 -40909837 - MIRb SINE MIR -95 173 114 3 1777 258 32 0 0 chr1 156285618 156285649 -40909783 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1777 1133 241 122 21 chr1 156286193 156286520 -40908912 + MTE2b LTR MaLR 20 379 0 3 1777 207 316 141 20 chr1 156286658 156286794 -40908638 + MIRb SINE MIR 28 176 -86 3 1777 242 29 29 0 chr1 156286930 156286965 -40908467 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1777 186 392 29 0 chr1 156286986 156287088 -40908344 + MIRc SINE MIR 152 256 -12 4 1777 1333 62 39 22 chr1 156288161 156288343 -40907089 - B2_Mm2 SINE B2 -8 187 3 4 1777 24 0 0 0 chr1 156289897 156289921 -40905511 + AT_rich Low_complexity Low_complexity 1 24 0 4 1777 391 316 99 59 chr1 156290353 156290555 -40904877 - B4A SINE B4 0 292 83 4 1777 573 301 26 7 chr1 156290570 156290724 -40904708 - RSINE1 SINE B4 -6 159 3 4 1777 303 218 18 0 chr1 156290724 156290770 -40904662 - B4A SINE B4 -202 90 44 4 1777 205 50 49 24 chr1 156291687 156291728 -40903704 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 4 1777 200 204 37 0 chr1 156294103 156294157 -40901275 + CT-rich Low_complexity Low_complexity 1 56 0 4 1777 865 29 21 85 chr1 156294184 156294373 -40901059 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 4 1777 1037 94 18 0 chr1 156294399 156294570 -40900862 + (TTCCC)n Simple_repeat Simple_repeat 2 175 0 4 1777 199 0 0 61 chr1 156295183 156295216 -40900216 + (CTGGGG)n Simple_repeat Simple_repeat 5 35 0 4 1777 407 335 88 50 chr1 156296313 156296552 -40898880 + MER47B DNA MER2_type 15 262 -156 4 1777 191 258 45 0 chr1 156296793 156296859 -40898573 + MIRm SINE MIR 205 273 -3 4 1777 7811 144 16 32 chr1 156299259 156301313 -40894119 + Lx5 LINE L1 4929 6926 -124 4 1777 760 109 0 0 chr1 156301321 156301422 -40894010 - Lx5 LINE L1 -510 6540 6440 4 1777 17390 10 0 0 chr1 156301418 156303358 -40892074 + L1Md_A LINE L1 3647 5586 -297 4 1777 8994 14 0 0 chr1 156303358 156304354 -40891078 + L1Md_A LINE L1 5587 6582 0 4 1777 1491 172 72 4 chr1 156304354 156304617 -40890815 - Lx5 LINE L1 -597 6453 6173 4 1777 221 57 0 28 chr1 156305276 156305312 -40890120 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1777 507 55 53 26 chr1 156305596 156305709 -40889723 + (CAAAA)n Simple_repeat Simple_repeat 1 116 0 4 1777 202 321 204 11 chr1 156306280 156306466 -40888966 - MIRb SINE MIR 0 268 47 4 1777 189 286 40 67 chr1 156306771 156306846 -40888586 + MIRc SINE MIR 19 91 -177 4 1777 852 29 0 0 chr1 156307926 156308029 -40887403 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1777 219 285 33 87 chr1 156311302 156311452 -40883980 - MIRb SINE MIR -107 161 20 4 1777 2140 151 48 3 chr1 156313058 156313409 -40882023 + ORR1B2 LTR MaLR 1 367 0 4 1777 281 100 20 0 chr1 156316137 156316187 -40879245 + (TTC)n Simple_repeat Simple_repeat 2 52 0 4 1777 261 269 16 136 chr1 156316609 156316734 -40878698 - MIRb SINE MIR -76 192 83 4 1777 621 0 0 0 chr1 156322351 156322420 -40873012 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1777 225 0 0 0 chr1 156322423 156322448 -40872984 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1777 233 322 39 19 chr1 156322593 156322701 -40872731 - MIRc SINE MIR -59 209 107 4 1777 200 234 0 0 chr1 156323072 156323119 -40872313 + L2 LINE L2 2475 2521 -898 4 1777 538 268 49 52 chr1 156323888 156324195 -40871237 + L2 LINE L2 2170 2475 -944 4 1777 242 101 27 80 chr1 156325206 156325281 -40870151 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 1777 611 304 6 6 chr1 156325281 156325440 -40869992 - B3A SINE B2 -38 160 2 4 1777 373 337 11 23 chr1 156325540 156325716 -40869716 - MIRc SINE MIR -49 219 46 4 1777 773 179 75 0 chr1 156327398 156327532 -40867900 + B1_Mur2 SINE Alu 1 144 -5 4 1777 198 359 93 8 chr1 156327574 156327703 -40867729 - MIRc SINE MIR -107 161 22 4 1777 446 244 130 0 chr1 156327713 156327836 -40867596 - MTE2a LTR MaLR 0 379 241 4 1777 537 273 27 49 chr1 156327824 156328009 -40867423 + MTE2a LTR MaLR 181 361 -18 4 1777 255 60 0 57 chr1 156328546 156328599 -40866833 + (CCA)n Simple_repeat Simple_repeat 2 51 0 4 1777 461 317 58 16 chr1 156331439 156331628 -40863804 - B3A SINE B2 -1 197 1 4 1777 418 324 28 0 chr1 156331636 156331781 -40863651 - B1F1 SINE Alu 0 149 1 4 1777 310 74 18 18 chr1 156334759 156334814 -40860618 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1777 1209 113 0 0 chr1 156336561 156336874 -40858558 + (TG)n Simple_repeat Simple_repeat 1 313 0 4 1777 727 355 96 62 chr1 156336903 156337497 -40857935 + MER21B LTR ERV1 94 707 -156 4 1777 232 275 143 0 chr1 156338383 156338474 -40856958 + MER121 Unknown Unknown 96 199 -213 4 1777 189 0 0 0 chr1 156339216 156339237 -40856195 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 1777 231 309 113 14 chr1 156339510 156339651 -40855781 + L2a LINE L2 2704 2858 -561 4 1777 432 0 0 0 chr1 156339845 156339893 -40855539 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 4 1777 336 264 100 62 chr1 156339911 156340121 -40855311 + L2a LINE L2 3209 3426 0 4 1777 321 239 101 15 chr1 156340869 156340997 -40854435 - MIR SINE MIR -32 236 95 4 1777 872 304 63 49 chr1 156341276 156341560 -40853872 + B4 SINE B4 1 288 -4 4 1777 210 241 52 0 chr1 156341586 156341644 -40853788 + GA-rich Low_complexity Low_complexity 6 66 0 4 1777 2995 174 53 11 chr1 156341786 156342063 -40853369 + RLTR20D LTR ERVK 4 281 -287 4 1777 3670 92 6 18 chr1 156342063 156342552 -40852880 + L1_Mus4 LINE L1 6151 6633 -3 4 1777 2995 174 53 11 chr1 156342552 156342712 -40852720 + RLTR20D LTR ERVK 282 463 -105 4 1777 357 82 0 0 chr1 156342712 156342761 -40852671 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1777 2995 174 53 11 chr1 156342761 156342864 -40852568 + RLTR20D LTR ERVK 464 567 -1 4 1777 22 0 0 0 chr1 156343641 156343663 -40851769 + AT_rich Low_complexity Low_complexity 1 22 0 4 1777 447 258 49 16 chr1 156343926 156344048 -40851384 - B1F1 SINE Alu -22 127 2 4 1777 240 163 0 0 chr1 156344564 156344607 -40850825 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 4 1777 186 370 138 9 chr1 156345221 156345330 -40850102 - MIRc SINE MIR -144 124 2 4 1777 345 47 0 0 chr1 156346321 156346364 -40849068 + (CCA)n Simple_repeat Simple_repeat 1 43 0 4 1777 258 32 0 0 chr1 156346364 156346395 -40849037 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1777 352 293 103 83 chr1 156346397 156346496 -40848936 + B4 SINE B4 68 174 -118 4 1777 1475 119 75 9 chr1 156346496 156346708 -40848724 + URR1A DNA MER1_type 1 226 0 4 1777 352 293 103 83 chr1 156346708 156346753 -40848679 + B4 SINE B4 175 215 -77 4 1777 214 282 0 14 chr1 156348292 156348364 -40847068 - MIR SINE MIR -118 144 74 4 1777 277 315 163 24 chr1 156349074 156349240 -40846192 + MIR SINE MIR 3 191 -71 4 1777 1039 276 53 74 chr1 156349436 156349816 -40845616 + MTEa LTR MaLR 1 372 -7 4 1777 552 321 128 48 chr1 156350011 156350669 -40844763 - L2a LINE L2 -263 3163 2447 4 1777 338 237 3 64 chr1 156351072 156351190 -40844242 + ID4_ SINE ID 15 122 -30 4 1777 272 120 0 20 chr1 156351624 156351675 -40843757 + (GGA)n Simple_repeat Simple_repeat 2 51 0 4 1777 4213 44 0 0 chr1 156352456 156352934 -40842498 - L1Md_F2 LINE L1 0 6582 6105 4 1777 4250 23 4 0 chr1 156352934 156353421 -40842011 + L1Md_F2 LINE L1 5594 6082 -500 4 1777 5223 106 21 19 chr1 156353706 156354449 -40840983 - Lx LINE L1 -2 6652 5908 4 1777 7635 91 5 14 chr1 156354449 156356083 -40839349 + L1_Mus2 LINE L1 4948 6565 -1 4 1777 4814 107 20 41 chr1 156356084 156357642 -40837790 - L1VL2 LINE L1 -2218 1696 587 4 1777 526 232 6 90 chr1 156357941 156358097 -40837335 + RMER15 LTR ERVL 328 470 -105 4 1777 222 37 0 0 chr1 156358097 156358124 -40837308 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 4 1777 356 312 27 34 chr1 156358196 156358345 -40837087 + L2a LINE L2 3274 3421 -5 4 1777 2868 116 38 43 chr1 156359391 156359861 -40835571 + MT2C_Mm LTR ERVL 1 468 -7 4 1777 306 248 99 0 chr1 156360059 156360160 -40835272 + MER5C DNA MER1_type 50 160 -153 4 1777 7279 101 17 17 chr1 156360161 156361535 -40833897 + L1_Mus3 LINE L1 5259 6634 -4 4 1777 363 206 94 54 chr1 156361535 156361684 -40833748 + MER5C DNA MER1_type 150 304 -9 4 1777 239 333 14 0 chr1 156361856 156361928 -40833504 + ID4 SINE ID 2 74 -9 4 1777 228 315 14 14 chr1 156361862 156361936 -40833496 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 4 1777 223 345 11 65 chr1 156361928 156361949 -40833483 + ID SINE ID 2 89 -135 4 1777 239 274 39 10 chr1 156362096 156362199 -40833233 + CT-rich Low_complexity Low_complexity 3 108 0 4 1777 880 315 61 103 chr1 156363501 156364743 -40830689 - L1M5 LINE L1 -1379 4767 3595 4 1777 687 103 0 57 chr1 156364743 156364867 -40830565 + Lx LINE L1 6538 6654 0 4 1777 880 315 61 103 chr1 156364867 156365182 -40830250 - L1M5 LINE L1 -2552 3594 3275 4 1777 459 0 0 0 chr1 156365321 156365372 -40830060 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1777 25 51 0 0 chr1 156365543 156365582 -40829850 + AT_rich Low_complexity Low_complexity 1 39 0 4 1777 1287 262 142 30 chr1 156365638 156366327 -40829105 + L1MC1 LINE L1 4228 4993 -1153 4 1777 1160 287 97 28 chr1 156366367 156366840 -40828592 + Lx8 LINE L1 6827 7332 -141 4 1777 274 358 65 8 chr1 156366886 156366906 -40828526 + B4A SINE B4 65 91 -201 4 1777 676 261 35 0 chr1 156366906 156367048 -40828384 + B1F2 SINE Alu 1 147 -2 4 1777 591 324 32 112 chr1 156367071 156367446 -40827986 + MLT1A1 LTR MaLR 61 405 -3 4 1777 807 252 72 65 chr1 156367462 156367708 -40827724 + L1MC1 LINE L1 5015 5248 -898 4 1777 1293 48 7 0 chr1 156367708 156367855 -40827577 + B1_Mus1 SINE Alu 1 148 0 4 1777 2494 221 43 43 chr1 156367855 156368504 -40826928 + L1MC1 LINE L1 5249 5901 -432 4 1777 232 324 27 36 chr1 156368773 156368885 -40826547 + MLT1A1 LTR MaLR 295 405 -3 4 1778 541 225 50 7 chr1 156368900 156369039 -40826393 + L1MC1 LINE L1 5915 6059 -274 4 1778 2127 266 129 108 chr1 156369015 156369200 -40826232 + L1MA8 LINE L1 3721 3972 -2168 4 1778 1376 116 41 23 chr1 156369200 156369420 -40826012 + URR1B DNA MER1_type 1 224 -1 4 1778 2127 264 108 80 chr1 156369420 156370125 -40825307 + L1MA8 LINE L1 3973 4729 -1562 4 1778 418 275 0 135 chr1 156370125 156370251 -40825181 + PB1 SINE Alu 12 120 0 4 1778 2127 264 108 80 chr1 156370251 156371236 -40824196 + L1MA8 LINE L1 4730 5788 -503 4 1778 327 85 0 0 chr1 156371236 156371283 -40824149 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1778 1955 259 56 10 chr1 156371283 156371363 -40824069 + L1MA8 LINE L1 5789 5872 -419 4 1778 328 238 133 72 chr1 156371808 156372098 -40823334 + L1MA8 LINE L1 5893 6209 -103 4 1778 204 360 183 17 chr1 156372171 156372346 -40823086 + MIRc SINE MIR 43 246 -22 4 1778 202 312 21 0 chr1 156375443 156375491 -40819941 - MIRb SINE MIR -179 89 41 4 1778 290 282 94 0 chr1 156376088 156376205 -40819227 + MLT1J1 LTR MaLR 82 209 -235 4 1778 661 271 160 16 chr1 156376296 156376615 -40818817 + MLT1A0 LTR MaLR 1 365 0 4 1778 344 332 82 63 chr1 156377711 156377917 -40817515 + MIRb SINE MIR 7 216 -52 4 1778 613 274 114 34 chr1 156378521 156378829 -40816603 - MER2 DNA MER2_type -7 338 4 5 1778 414 100 0 0 chr1 156379048 156379108 -40816324 + (GGGAGA)n Simple_repeat Simple_repeat 6 65 0 5 1778 264 30 0 0 chr1 156379233 156379266 -40816166 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 5 1778 1429 173 0 18 chr1 156379936 156380165 -40815267 + URR1B DNA MER1_type 1 225 0 5 1778 225 216 0 0 chr1 156381639 156381690 -40813742 - MER2 DNA MER2_type -202 143 93 5 1778 479 112 12 0 chr1 156381717 156381797 -40813635 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1778 613 278 158 75 chr1 156381827 156382092 -40813340 - B4 SINE B4 -5 287 1 5 1778 414 0 0 0 chr1 156382910 156382956 -40812476 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1778 282 56 0 0 chr1 156383432 156383468 -40811964 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 5 1778 183 42 0 0 chr1 156385675 156385699 -40809733 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1778 22 56 0 0 chr1 156386684 156386720 -40808712 + AT_rich Low_complexity Low_complexity 1 36 0 5 1778 834 231 54 68 chr1 156386772 156387051 -40808381 + L1MD2 LINE L1 5546 5820 -539 5 1778 608 311 109 20 chr1 156387146 156387448 -40807984 + L1MD2 LINE L1 6016 6344 -15 5 1778 23 86 0 0 chr1 156388300 156388358 -40807074 + AT_rich Low_complexity Low_complexity 1 58 0 5 1778 22 35 0 0 chr1 156388495 156388524 -40806908 + AT_rich Low_complexity Low_complexity 1 29 0 5 1778 212 286 130 20 chr1 156388864 156388964 -40806468 + L2a LINE L2 3307 3417 -9 5 1778 205 111 67 0 chr1 156389257 156389302 -40806130 + GA-rich Low_complexity Low_complexity 5 52 0 5 1778 987 117 0 0 chr1 156389302 156389482 -40805950 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1778 415 252 28 18 chr1 156389889 156389998 -40805434 - RMER20B LTR ERVK -517 110 1 5 1778 213 237 0 0 chr1 156390369 156390428 -40805004 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1778 198 0 0 0 chr1 156390875 156390897 -40804535 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1778 34034 75 4 8 chr1 156391670 156396831 -40798601 + L1Md_A LINE L1 450 5616 -567 5 1778 8400 43 0 2 chr1 156396831 156397828 -40797604 + L1Md_F2 LINE L1 5588 6582 0 5 1778 1385 252 12 22 chr1 156397828 156397869 -40797563 + L1Md_A LINE L1 5617 5652 -531 5 1778 493 307 18 18 chr1 156398318 156398484 -40796948 + MIRb SINE MIR 97 262 -6 5 1778 3260 108 9 2 chr1 156398665 156399112 -40796320 + Lx2 LINE L1 6111 6560 -437 5 1778 33 43 0 0 chr1 156399128 156399175 -40796257 + AT_rich Low_complexity Low_complexity 1 47 0 5 1778 525 351 34 0 chr1 156400210 156400418 -40795014 + MIRb SINE MIR 49 263 -5 5 1778 1457 142 0 22 chr1 156400652 156400882 -40794550 - URR1B DNA MER1_type 0 225 1 5 1778 1353 13 0 0 chr1 156402433 156402588 -40792844 + (TTC)n Simple_repeat Simple_repeat 1 155 0 5 1778 828 244 42 56 chr1 156404213 156404499 -40790933 - HAL1 LINE L1 0 2507 2226 5 1778 26 0 0 0 chr1 156404530 156404556 -40790876 + AT_rich Low_complexity Low_complexity 1 26 0 5 1778 423 0 0 0 chr1 156404765 156404812 -40790620 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1778 269 299 27 81 chr1 156405107 156405186 -40790246 - B3 SINE B2 -1 215 145 5 1778 270 56 0 0 chr1 156405186 156405222 -40790210 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1778 269 299 27 81 chr1 156405222 156405291 -40790141 - B3 SINE B2 -72 144 75 5 1778 314 339 77 20 chr1 156405400 156405647 -40789785 - HAL1 LINE L1 -864 1643 1383 5 1778 301 294 88 19 chr1 156405799 156406014 -40789418 - L1ME5 LINE L1 -281 5913 5684 5 1778 300 276 112 0 chr1 156406159 156406257 -40789175 - PB1D10 SINE Alu -8 109 1 5 1778 266 143 0 16 chr1 156406274 156406338 -40789094 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 5 1778 252 246 16 0 chr1 156406656 156406717 -40788715 - HAL1 LINE L1 -1639 868 807 5 1778 598 284 77 82 chr1 156406752 156407211 -40788221 + MLT1C LTR MaLR 1 459 -8 5 1778 551 225 53 7 chr1 156407942 156408094 -40787338 + HAL1-2a_MD LINE L1 2343 2501 -523 5 1778 206 281 95 24 chr1 156408521 156408605 -40786827 + MIRm SINE MIR 172 261 -15 5 1778 536 303 103 53 chr1 156412789 156413071 -40782361 + MLT2B3 LTR ERVL 252 547 -7 5 1778 404 314 71 38 chr1 156413809 156414021 -40781411 - MER20 DNA MER1_type 0 219 1 5 1778 421 344 50 92 chr1 156414975 156415433 -40779999 + LTR16A1 LTR ERVL 16 454 -2 5 1778 213 352 44 0 chr1 156415648 156415739 -40779693 - MIR3 SINE MIR -29 179 85 5 1778 1277 129 119 0 chr1 156415869 156416071 -40779361 + URR1A DNA MER1_type 1 226 0 5 1778 788 171 67 52 chr1 156417807 156418017 -40777415 + Lx5 LINE L1 6838 7050 0 5 1778 2913 224 45 8 chr1 156419045 156419710 -40775722 + Lx9 LINE L1 6825 7514 -130 5 1778 317 177 13 0 chr1 156419710 156419789 -40775643 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1778 375 226 50 14 chr1 156419805 156419944 -40775488 + Lx9 LINE L1 7501 7644 0 5 1778 25 31 0 0 chr1 156419944 156419976 -40775456 + AT_rich Low_complexity Low_complexity 1 32 0 5 1778 198 234 0 0 chr1 156420798 156420845 -40774587 + L2b LINE L2 3329 3375 0 5 1778 653 312 0 22 chr1 156420932 156421112 -40774320 + B4 SINE B4 107 282 -10 5 1778 236 154 19 0 chr1 156421235 156421287 -40774145 + GA-rich Low_complexity Low_complexity 1 53 0 5 1778 221 330 143 19 chr1 156422213 156422423 -40773009 - MIR SINE MIR 0 262 27 5 1778 318 312 41 41 chr1 156422843 156422990 -40772442 + MER5A DNA MER1_type 1 147 -42 5 1778 815 268 101 37 chr1 156423003 156423329 -40772103 + MLT1A1 LTR MaLR 45 391 -17 5 1778 240 333 0 0 chr1 156423385 156423448 -40771984 + RMER30 DNA MER1_type 139 201 -1 5 1778 366 123 0 0 chr1 156423564 156423621 -40771811 + (GGGAGA)n Simple_repeat Simple_repeat 5 61 0 5 1778 274 303 13 0 chr1 156424811 156424887 -40770545 - MIRb SINE MIR -94 174 98 5 1778 184 338 14 27 chr1 156425231 156425304 -40770128 + MIR SINE MIR 67 138 -124 5 1778 258 220 0 0 chr1 156428079 156428138 -40767294 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1778 366 205 12 49 chr1 156428311 156428393 -40767039 - B4A SINE B4 0 292 214 5 1778 296 364 0 0 chr1 156428425 156428513 -40766919 - RSINE1 SINE B4 0 165 78 5 1778 220 292 82 68 chr1 156428677 156428824 -40766608 - B1F2 SINE Alu 0 149 1 5 1778 623 254 46 26 chr1 156428824 156428896 -40766536 - B4A SINE B4 -208 84 9 5 1778 223 295 0 0 chr1 156429550 156429611 -40765821 + L2a LINE L2 3357 3417 -9 5 1778 425 299 8 25 chr1 156430208 156430328 -40765104 + B1F1 SINE Alu 1 118 -31 5 1778 198 0 0 0 chr1 156430729 156430751 -40764681 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1778 296 310 68 30 chr1 156431879 156432012 -40763420 + Tigger14a DNA MER2_type 19 156 -168 5 1778 1020 40 0 0 chr1 156432610 156432735 -40762697 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 5 1778 709 286 50 77 chr1 156433304 156433592 -40761840 + MLT1B LTR MaLR 1 274 -116 5 1778 573 52 0 0 chr1 156433592 156433669 -40761763 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 5 1778 709 286 50 77 chr1 156433669 156433781 -40761651 + MLT1B LTR MaLR 275 390 0 5 1778 219 419 9 0 chr1 156434532 156434637 -40760795 + MIRb SINE MIR 101 206 -62 5 1778 752 263 42 33 chr1 156435634 156435846 -40759586 - ID_B1 SINE B4 -9 215 2 5 1778 189 147 0 0 chr1 156436554 156436588 -40758844 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 5 1778 619 329 91 35 chr1 156436641 156437069 -40758363 + L2a LINE L2 2352 2803 -616 5 1778 374 301 114 20 chr1 156437337 156437486 -40757946 + RSINE1 SINE B4 3 165 0 5 1778 256 297 109 0 chr1 156437591 156437692 -40757740 + RSINE1 SINE B4 15 126 -39 5 1778 248 391 11 0 chr1 156437748 156437840 -40757592 + L2a LINE L2 3307 3399 -27 5 1778 23 33 0 0 chr1 156437900 156437930 -40757502 + AT_rich Low_complexity Low_complexity 1 30 0 5 1778 258 337 0 0 chr1 156438020 156438109 -40757323 - L2a LINE L2 -5 3421 3333 5 1778 334 246 286 40 chr1 156439152 156439449 -40755983 + L1M5 LINE L1 3026 3395 -2751 5 1778 465 303 30 89 chr1 156439454 156439758 -40755674 + B4A SINE B4 3 288 -4 5 1778 559 268 47 0 chr1 156439809 156439936 -40755496 + ETnERV2-int LTR ERVK 7070 7202 -204 5 1778 326 253 221 17 chr1 156440315 156440496 -40754936 + L1M5 LINE L1 3526 3743 -2403 5 1778 425 274 26 0 chr1 156440700 156440817 -40754615 + B1F SINE Alu 24 143 -6 5 1778 312 269 13 0 chr1 156440821 156440899 -40754533 + ID4 SINE ID 2 80 -3 5 1778 281 349 84 19 chr1 156440932 156441087 -40754345 + L1M5 LINE L1 4004 4168 -1978 5 1778 284 264 48 54 chr1 156441099 156441187 -40754245 + L1M5 LINE L1 4235 4324 -1822 5 1778 8222 26 0 0 chr1 156441187 156442118 -40753314 + L1Md_T LINE L1 5650 6580 -2 5 1778 284 264 48 54 chr1 156442118 156442197 -40753235 + L1M5 LINE L1 4325 4401 -1745 5 1778 402 288 71 30 chr1 156442257 156442454 -40752978 + L1M5 LINE L1 4549 4753 -1393 5 1778 989 203 14 33 chr1 156442472 156442686 -40752746 + B3 SINE B2 7 216 0 5 1778 668 276 29 25 chr1 156442963 156443167 -40752265 + B4A SINE B4 2 206 -86 5 1778 502 259 296 27 chr1 156443305 156443599 -40751833 + RMER20B LTR ERVK 212 584 -43 5 1778 378 0 0 0 chr1 156443678 156443720 -40751712 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1778 204 162 0 26 chr1 156443746 156443784 -40751648 + (CATA)n Simple_repeat Simple_repeat 4 40 0 5 1778 2907 262 127 21 chr1 156443899 156444808 -40750624 + Lx9 LINE L1 6483 7489 -155 5 1778 4840 106 47 10 chr1 156444808 156445588 -40749844 + RMER17D2 LTR ERVK 1 809 0 5 1778 408 239 33 25 chr1 156445588 156445602 -40749830 + Lx9 LINE L1 7490 7503 -141 5 1778 3163 151 9 11 chr1 156447434 156447988 -40747444 - RLTR1D LTR ERV1 -16 589 37 5 1778 202 376 43 0 chr1 156448027 156448168 -40747264 + MIRb SINE MIR 86 232 -36 5 1778 3522 30 0 0 chr1 156448421 156448817 -40746615 + MTA_Mm LTR MaLR 1 396 0 5 1778 513 47 0 0 chr1 156448886 156448950 -40746482 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1778 865 293 63 75 chr1 156449398 156449841 -40745591 + RMER5 LTR ERV1 45 482 -52 5 1778 750 216 129 21 chr1 156449953 156450147 -40745285 - B3 SINE B2 0 216 2 5 1778 234 336 71 16 chr1 156452908 156453035 -40742397 - L2b LINE L2 -18 3357 3224 5 1778 357 24 0 0 chr1 156453616 156453658 -40741774 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1778 236 111 22 0 chr1 156453660 156453705 -40741727 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1778 2013 123 20 22 chr1 156453737 156454097 -40741335 + ORR1A4 LTR MaLR 14 394 0 5 1778 236 269 77 0 chr1 156454331 156454409 -40741023 - MLT1A0 LTR MaLR -73 292 209 5 1778 196 333 52 39 chr1 156454636 156454789 -40740643 - L2b LINE L2 -1007 2412 2258 5 1778 237 355 13 0 chr1 156454904 156454980 -40740452 - ID4 SINE ID -4 79 3 6 1778 258 256 59 17 chr1 156457964 156458083 -40737349 - L2a LINE L2 -86 3340 3217 6 1778 221 298 236 8 chr1 156458184 156458575 -40736857 - L2a LINE L2 -365 3054 2569 6 1778 523 247 103 74 chr1 156458732 156458848 -40736584 + B4A SINE B4 111 229 -63 6 1778 595 282 14 0 chr1 156458848 156458990 -40736442 + B1_Mur1 SINE Alu 1 144 -5 6 1778 523 247 103 74 chr1 156458990 156459048 -40736384 + B4A SINE B4 230 290 -2 6 1778 180 111 0 0 chr1 156459661 156459688 -40735744 + (TCC)n Simple_repeat Simple_repeat 3 29 0 6 1778 1363 102 16 0 chr1 156459690 156459877 -40735555 - B2_Mm2 SINE B2 -5 190 1 6 1778 3205 235 29 22 chr1 156460323 156461059 -40734373 + Lx9 LINE L1 6505 7245 -399 6 1778 1281 65 0 0 chr1 156462737 156462905 -40732527 + (TG)n Simple_repeat Simple_repeat 2 169 0 6 1778 196 373 68 6 chr1 156464177 156464339 -40731093 - MIRc SINE MIR -7 261 90 6 1778 294 29 0 0 chr1 156464518 156464553 -40730879 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1778 237 151 0 0 chr1 156464780 156464833 -40730599 + T-rich Low_complexity Low_complexity 1 53 0 6 1778 222 37 0 0 chr1 156465178 156465205 -40730227 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1778 211 175 17 17 chr1 156465757 156465815 -40729617 + GA-rich Low_complexity Low_complexity 2 59 0 6 1778 25 0 0 0 chr1 156466668 156466693 -40728739 + AT_rich Low_complexity Low_complexity 1 25 0 6 1778 251 308 25 25 chr1 156466707 156466827 -40728605 - MIRb SINE MIR -28 240 121 6 1778 1067 304 34 42 chr1 156467648 156468002 -40727430 + Lx8 LINE L1 6871 7221 -252 6 1778 267 368 0 0 chr1 156467994 156468081 -40727351 + Lx8 LINE L1 7187 7273 -200 6 1778 187 173 35 88 chr1 156469678 156469735 -40725697 - MER5A DNA MER1_type 0 189 136 6 1778 868 239 41 163 chr1 156470705 156471169 -40724263 - Lx8 LINE L1 -1694 6002 5546 6 1778 449 246 17 11 chr1 156471183 156471360 -40724072 + GA-rich Low_complexity Low_complexity 3 180 0 6 1778 227 182 23 0 chr1 156471360 156471404 -40724028 + G-rich Low_complexity Low_complexity 5 49 0 6 1778 801 293 98 0 chr1 156471483 156471749 -40723683 + B4A SINE B4 1 292 0 6 1778 21 36 0 0 chr1 156471764 156471792 -40723640 + AT_rich Low_complexity Low_complexity 1 28 0 6 1778 1050 165 160 0 chr1 156471947 156472141 -40723291 - URR1B DNA MER1_type 0 225 1 6 1778 533 324 122 26 chr1 156472391 156472810 -40722622 + L2a LINE L2 1107 1565 -1854 6 1778 507 333 230 18 chr1 156473086 156474166 -40721266 + L2a LINE L2 2090 3407 -19 6 1778 21 0 0 0 chr1 156475568 156475589 -40719843 + AT_rich Low_complexity Low_complexity 1 21 0 6 1778 934 266 101 40 chr1 156475952 156476347 -40719085 + MTD LTR MaLR 1 419 0 6 1778 381 162 0 0 chr1 156476394 156476462 -40718970 + T-rich Low_complexity Low_complexity 1 68 0 6 1778 1654 205 217 48 chr1 156476654 156477110 -40718322 + MT2A LTR ERVL 1 533 0 6 1778 315 323 99 29 chr1 156477305 156477477 -40717955 + RMER15 LTR ERVL 275 458 -117 6 1778 643 278 55 20 chr1 156479075 156479328 -40716104 - MER2 DNA MER2_type -1 344 83 6 1778 708 274 11 0 chr1 156480127 156480302 -40715130 - MER5B DNA MER1_type 0 178 2 6 1778 300 343 0 0 chr1 156483954 156484056 -40711376 + PB1D10 SINE Alu 2 103 -14 6 1778 321 26 0 0 chr1 156484058 156484096 -40711336 + (TAA)n Simple_repeat Simple_repeat 2 39 0 6 1778 405 218 144 61 chr1 156484635 156484767 -40710665 + B4 SINE B4 7 149 -143 6 1778 221 83 28 0 chr1 156484874 156484910 -40710522 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1778 1148 282 30 39 chr1 156487857 156488219 -40707213 + ORR1E LTR MaLR 1 359 0 6 1778 413 318 93 52 chr1 156489560 156489905 -40705527 + MLT1D LTR MaLR 25 383 -122 6 1778 654 238 30 24 chr1 156492636 156492804 -40702628 - MER20 DNA MER1_type -25 194 26 6 1778 245 281 89 24 chr1 156493355 156493479 -40701953 - MIRc SINE MIR -114 154 23 6 1778 353 371 23 55 chr1 156493709 156493926 -40701506 - MamSINE1 SINE tRNA -51 239 30 6 1778 739 236 34 22 chr1 156496000 156496178 -40699254 - B3 SINE B2 0 216 37 6 1778 21 0 0 0 chr1 156496275 156496296 -40699136 + AT_rich Low_complexity Low_complexity 1 21 0 6 1778 10118 91 20 3 chr1 156496379 156498265 -40697167 + Lx3_Mus LINE L1 5108 7001 -8 6 1778 394 281 45 88 chr1 156498301 156498609 -40696823 + L1M5 LINE L1 5336 5630 -549 6 1778 240 219 15 15 chr1 156498736 156498801 -40696631 + L1M5 LINE L1 5808 5872 -307 6 1778 1512 255 51 78 chr1 156499087 156499462 -40695970 - L1MB3 LINE L1 -3 6180 5811 6 1778 567 0 0 0 chr1 156499462 156499525 -40695907 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 6 1778 1512 255 51 78 chr1 156499525 156499762 -40695670 - L1MB3 LINE L1 -373 5810 5585 6 222 634 240 168 0 chr1 156499821 156500000 -40695432 + B3 SINE B2 1 209 -7 6 1779 802 303 45 78 chr1 156500225 156500648 -40694784 + Tigger7 DNA MER2_type 1 409 -2082 1 1779 410 277 9 47 chr1 156500961 156501067 -40694365 + PB1D7 SINE Alu 10 111 -9 2 1779 211 136 17 17 chr1 156501508 156501568 -40693864 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1779 8141 45 14 0 chr1 156501770 156502802 -40692630 - L1Md_F3 LINE L1 0 6584 5539 4 1779 193 351 55 78 chr1 156506397 156506616 -40688816 - MIRc SINE MIR -30 238 25 5 1779 636 14 0 0 chr1 156506673 156506746 -40688686 + (GAA)n Simple_repeat Simple_repeat 2 74 0 6 1779 195 340 66 0 chr1 156507155 156507261 -40688171 + MIR SINE MIR 58 170 -92 7 1779 273 232 0 0 chr1 156507324 156507393 -40688039 + (TATG)n Simple_repeat Simple_repeat 3 71 0 8 1779 501 256 159 73 chr1 156507910 156508155 -40687277 + B4 SINE B4 27 292 0 9 1779 681 24 0 0 chr1 156509657 156509740 -40685692 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1779 2595 190 77 4 chr1 156510188 156510731 -40684701 - RMER4B LTR ERVK 0 585 3 1 1779 869 205 18 32 chr1 156512439 156512656 -40682776 + B3 SINE B2 1 214 -2 1 1779 250 136 31 165 chr1 156514280 156514377 -40681055 + PB1 SINE Alu 42 125 -2 1 1779 656 178 20 27 chr1 156515190 156515340 -40680092 - L1MB7 LINE L1 -8 6176 6028 1 1779 187 173 19 19 chr1 156515484 156515537 -40679895 + GA-rich Low_complexity Low_complexity 1 53 0 1 1779 305 344 99 18 chr1 156516646 156516868 -40678564 - MER34 LTR ERV1 -299 243 4 1 1779 293 68 23 0 chr1 156516997 156517041 -40678391 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1779 298 325 0 0 chr1 156518860 156518940 -40676492 + MIR SINE MIR 92 171 -91 1 1779 712 258 31 55 chr1 156519073 156519327 -40676105 + B4A SINE B4 3 250 -42 1 1779 480 311 0 29 chr1 156519587 156519723 -40675709 + B1F1 SINE Alu 16 147 -2 2 1779 513 0 0 0 chr1 156520531 156520588 -40674844 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1779 285 29 0 0 chr1 156520945 156520979 -40674453 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1779 290 203 23 30 chr1 156521026 156521158 -40674274 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 1779 532 280 102 34 chr1 156521837 156522162 -40673270 - BLACKJACK DNA AcHobo -1350 1594 1248 2 1779 343 307 109 18 chr1 156522261 156522490 -40672942 + L1M5 LINE L1 4099 4348 -1798 2 1779 399 92 0 0 chr1 156523862 156523927 -40671505 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1779 270 0 0 0 chr1 156524766 156524796 -40670636 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1779 541 340 7 0 chr1 156527342 156527486 -40667946 + RSINE1 SINE B4 2 146 -19 2 1779 705 238 166 17 chr1 156527492 156527667 -40667765 + B3 SINE B2 1 201 -15 2 1779 375 23 0 0 chr1 156527668 156527712 -40667720 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1779 746 179 7 29 chr1 156527724 156527862 -40667570 - B1_Mur3 SINE Alu -13 136 2 3 1779 3045 169 58 17 chr1 156528675 156529266 -40666166 + Lx3C LINE L1 6351 6965 -11 3 1779 380 19 0 37 chr1 156529267 156529321 -40666111 + (TAAAA)n Simple_repeat Simple_repeat 3 54 0 3 1779 181 358 74 0 chr1 156530009 156530104 -40665328 - MIRb SINE MIR -141 127 26 3 1779 215 271 0 63 chr1 156530250 156530313 -40665119 + L2a LINE L2 3363 3421 -5 3 1779 447 327 77 9 chr1 156530370 156530592 -40664840 + Lx8 LINE L1 7236 7472 -1 3 1779 1490 239 42 17 chr1 156531359 156531716 -40663716 - MTE2b LTR MaLR -13 366 1 3 1779 394 270 89 61 chr1 156532004 156532217 -40663215 - Charlie23a DNA MER1_type -120 219 1 3 1779 633 14 0 0 chr1 156532520 156532594 -40662838 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 1779 261 305 132 14 chr1 156534538 156534751 -40660681 + Helitron2Na_Mam RC Helitron? 16 253 -71 4 1779 630 0 0 0 chr1 156536777 156536847 -40658585 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1779 12441 19 0 0 chr1 156536969 156538388 -40657044 - L1_Mm LINE L1 -643 5240 3822 4 1779 374 24 0 0 chr1 156538386 156538427 -40657005 + L1Md_T LINE L1 5545 5585 -298 4 1779 8256 51 0 0 chr1 156538428 156539424 -40656008 + L1Md_T LINE L1 5587 6582 0 4 1779 1168 107 5 0 chr1 156539425 156539612 -40655820 + RLTR31A_Mm LTR ERVK 116 303 -281 4 1779 3435 33 2 0 chr1 156540179 156540574 -40654858 - MTA_Mm LTR MaLR 0 396 1 4 1779 1011 308 96 47 chr1 156540848 156541359 -40654073 - MER44B DNA MER2_type -7 543 8 4 1779 185 269 0 69 chr1 156541376 156541448 -40653984 + MIR SINE MIR 95 161 -101 4 1779 182 231 0 0 chr1 156541859 156541898 -40653534 - L2c LINE L2 -34 3353 3315 4 1779 216 286 88 18 chr1 156542573 156542612 -40652820 + MIRc SINE MIR 32 70 -198 4 1779 1302 141 22 26 chr1 156542612 156542838 -40652594 - URR1B DNA MER1_type 0 225 1 5 1779 222 269 35 5 chr1 156542838 156542921 -40652511 + MIRb SINE MIR 71 166 -102 4 1779 261 277 85 78 chr1 156543152 156543305 -40652127 + MLT1A1 LTR MaLR 255 408 0 5 1779 266 280 75 17 chr1 156543952 156544072 -40651360 - MER104 DNA Tc2 -12 169 43 5 1779 875 320 61 15 chr1 156544622 156544952 -40650480 - MER2 DNA MER2_type 0 345 1 5 1779 321 26 0 0 chr1 156545432 156545470 -40649962 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1779 2689 154 56 42 chr1 156545475 156545836 -40649596 + RMER1C Other Other 832 1191 -151 5 1779 206 32 32 0 chr1 156545836 156545867 -40649565 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1779 2689 154 56 42 chr1 156545867 156546007 -40649425 + RMER1C Other Other 1192 1339 -3 5 1779 939 18 0 0 chr1 156547358 156547467 -40647965 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 1779 351 238 50 0 chr1 156550597 156550698 -40644734 + MER103 DNA DNA 1 106 -60 5 1779 372 43 0 0 chr1 156550947 156550993 -40644439 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1779 501 224 205 86 chr1 156553989 156554233 -40641199 + RMER5 LTR ERV1 1 273 -261 6 1779 186 43 0 0 chr1 156554644 156554667 -40640765 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1779 240 364 91 0 chr1 156556042 156556185 -40639247 - MER63A DNA AcHobo -48 162 7 6 1779 359 231 27 27 chr1 156556610 156556721 -40638711 + PB1D10 SINE Alu 1 111 -6 6 1779 282 73 0 0 chr1 156557266 156557307 -40638125 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 6 1779 2162 158 38 57 chr1 156557875 156558345 -40637087 - RMER6B LTR ERVK 0 461 1 6 1779 504 163 54 0 chr1 156558345 156558437 -40636995 - RMER6B LTR ERVK -349 112 16 6 1779 21 0 0 0 chr1 156560852 156560873 -40634559 + AT_rich Low_complexity Low_complexity 1 21 0 6 1779 230 357 175 22 chr1 156561885 156562154 -40633278 + L3 LINE CR1 3321 3630 -859 6 1779 233 337 20 0 chr1 156562242 156562343 -40633089 + MIRb SINE MIR 93 195 -73 6 1779 274 207 0 0 chr1 156563057 156563115 -40632317 - MER3 DNA MER1_type -20 189 132 7 1779 27 0 0 0 chr1 156564251 156564278 -40631154 + AT_rich Low_complexity Low_complexity 1 27 0 7 1779 967 130 220 0 chr1 156564281 156564458 -40630974 + B3 SINE B2 1 216 0 7 1779 437 235 29 0 chr1 156564595 156564697 -40630735 - Tigger14a DNA MER2_type -183 141 37 7 1779 847 201 0 0 chr1 156565314 156565463 -40629969 - B1_Mur4 SINE Alu 0 150 2 7 1779 494 314 0 40 chr1 156565543 156565719 -40629713 + MER5A DNA MER1_type 16 184 -5 7 1779 201 250 33 16 chr1 156569823 156569884 -40625548 + MER5A DNA MER1_type 97 158 -31 7 1779 476 310 96 10 chr1 156569997 156570196 -40625236 - MIR SINE MIR -16 246 31 7 1779 201 74 0 0 chr1 156573254 156573281 -40622151 + (GAA)n Simple_repeat Simple_repeat 2 28 0 7 1779 204 40 0 0 chr1 156573847 156573872 -40621560 + (CCG)n Simple_repeat Simple_repeat 2 26 0 7 1779 183 80 0 0 chr1 156573926 156573951 -40621481 + (CGAG)n Simple_repeat Simple_repeat 2 26 0 8 1779 226 275 25 0 chr1 156575191 156575271 -40620161 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1779 211 351 13 0 chr1 156575596 156575673 -40619759 - L2a LINE L2 -3 3423 3346 8 1779 378 0 0 0 chr1 156577118 156577160 -40618272 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1779 216 0 0 0 chr1 156577187 156577211 -40618221 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1779 399 225 57 29 chr1 156578722 156578827 -40616605 + PB1D7 SINE Alu 1 108 -12 8 1779 384 214 0 0 chr1 156578837 156578907 -40616525 + ID4_ SINE ID 3 72 -11 8 1779 247 277 0 0 chr1 156579794 156579859 -40615573 - L2a LINE L2 0 3426 3362 8 1779 230 116 23 0 chr1 156581143 156581186 -40614246 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1779 210 143 0 0 chr1 156581427 156581462 -40613970 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1779 180 0 0 0 chr1 156581625 156581645 -40613787 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1779 1168 42 21 0 chr1 156581706 156581849 -40613583 + B1_Mus1 SINE Alu 2 147 -1 9 1779 183 162 0 0 chr1 156581909 156581946 -40613486 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1779 397 231 0 0 chr1 156582111 156582189 -40613243 + ID4 SINE ID 5 82 -1 9 1779 252 0 0 0 chr1 156582190 156582218 -40613214 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 9 1779 458 301 0 0 chr1 156582578 156582691 -40612741 + PB1D10 SINE Alu 3 115 -2 9 1779 579 264 23 70 chr1 156582695 156582866 -40612566 + RSINE1 SINE B4 3 165 0 9 1779 21 0 0 0 chr1 156582999 156583020 -40612412 + AT_rich Low_complexity Low_complexity 1 21 0 9 1779 299 306 70 21 chr1 156583053 156583213 -40612219 - MIR SINE MIR -76 192 26 9 1779 482 284 18 0 chr1 156584554 156584663 -40610769 - PB1D7 SINE Alu -7 113 3 9 1779 313 267 21 39 chr1 156584967 156585050 -40610382 + MLT1A1 LTR MaLR 1 82 -326 1 1779 368 155 0 0 chr1 156585050 156585108 -40610324 + RSINE1 SINE B4 3 60 -105 1 1779 206 330 54 33 chr1 156585787 156586028 -40609404 + L2 LINE L2 2245 2490 -929 1 1779 840 48 0 0 chr1 156586414 156586519 -40608913 + (GGGA)n Simple_repeat Simple_repeat 4 108 0 1 1779 337 253 0 10 chr1 156587335 156587431 -40608001 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1779 390 271 178 7 chr1 156587609 156587761 -40607671 - MER20 DNA MER1_type -40 179 2 1 1779 349 327 129 29 chr1 156588098 156588378 -40607054 + L1MEf LINE L1 1163 1470 -4772 1 1779 651 316 78 43 chr1 156588760 156589018 -40606414 + B4A SINE B4 10 276 -16 1 1779 22 0 0 0 chr1 156589180 156589202 -40606230 + AT_rich Low_complexity Low_complexity 1 22 0 1 1779 725 176 73 0 chr1 156589220 156589356 -40606076 + B1_Mur2 SINE Alu 2 147 -2 1 1779 554 306 92 34 chr1 156589834 156590585 -40604847 + L1MEf LINE L1 4961 5762 -432 1 1779 366 360 72 73 chr1 156591052 156591610 -40603822 + L1ME4a LINE L1 5521 6077 -47 1 1779 4070 136 31 18 chr1 156591945 156592628 -40602804 - RLTR17 LTR ERVK 0 692 1 1 1779 626 139 36 6 chr1 156594209 156594375 -40601057 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1779 266 236 27 27 chr1 156595142 156595216 -40600216 + MLT1A LTR MaLR 13 86 -288 1 1779 248 278 54 32 chr1 156595442 156595535 -40599897 + MLT1A LTR MaLR 271 365 0 1 1779 321 188 16 0 chr1 156596500 156596564 -40598868 - MTEb LTR MaLR 0 379 315 1 1779 209 98 23 47 chr1 156596972 156597015 -40598417 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1779 192 179 0 0 chr1 156597182 156597221 -40598211 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1779 812 133 0 6 chr1 156601456 156601637 -40593795 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1779 441 364 49 37 chr1 156602789 156603137 -40592295 + ORR1E LTR MaLR 8 359 0 1 1779 306 321 233 0 chr1 156603853 156604068 -40591364 + MLT1E2 LTR MaLR 244 508 -119 1 1779 1055 175 113 0 chr1 156608207 156608401 -40587031 + B3 SINE B2 1 216 0 1 1779 558 0 0 0 chr1 156608688 156608750 -40586682 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1779 182 284 83 36 chr1 156608770 156608854 -40586578 - MIRm SINE MIR -127 149 62 1 1779 333 0 0 0 chr1 156609136 156609173 -40586259 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1779 195 284 0 15 chr1 156610937 156611005 -40584427 + MIRc SINE MIR 199 265 -3 1 1779 409 361 121 34 chr1 156611902 156612405 -40583027 - L1MB8 LINE L1 -237 5947 5402 1 1779 762 278 39 35 chr1 156612812 156613066 -40582366 + MER2 DNA MER2_type 11 265 -80 1 1779 671 299 43 26 chr1 156613101 156613334 -40582098 + B4A SINE B4 42 278 -14 1 1779 247 357 108 70 chr1 156613607 156613856 -40581576 - L2 LINE L2 -888 2531 2254 1 1779 810 0 0 0 chr1 156613856 156613946 -40581486 + (GGAGA)n Simple_repeat Simple_repeat 3 92 0 1 1779 247 357 108 70 chr1 156613946 156614166 -40581266 - L2 LINE L2 -1166 2253 2045 1 1779 3267 263 26 34 chr1 156614725 156615731 -40579701 - L1MA7 LINE L1 -6 6285 5288 1 1779 9797 38 0 2 chr1 156615712 156617589 -40577843 - L1Md_F2 LINE L1 -1 6581 4708 1 1779 917 257 78 16 chr1 156617746 156618003 -40577429 - Lx5 LINE L1 0 7050 6778 1 1779 519 17 0 0 chr1 156618594 156618654 -40576778 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1779 400 224 35 0 chr1 156618849 156618934 -40576498 + B4 SINE B4 5 92 -200 1 1779 749 265 28 5 chr1 156618934 156619150 -40576282 + Lx8 LINE L1 5694 5914 -1559 1 1779 673 256 39 0 chr1 156619211 156619367 -40576065 - Lx8 LINE L1 -136 7337 7176 1 1779 225 264 19 0 chr1 156619560 156619613 -40575819 + Lx8 LINE L1 6102 6155 -1318 1 1779 3249 275 73 35 chr1 156619623 156619778 -40575654 + Lx8 LINE L1 6257 6425 -1048 1 1779 1879 116 77 68 chr1 156619778 156620101 -40575331 + ORR1A3 LTR MaLR 1 326 0 1 1779 3249 275 73 35 chr1 156620101 156620533 -40574899 + Lx8 LINE L1 6426 6854 -619 1 1779 2962 93 5 8 chr1 156620533 156620934 -40574498 - MTB LTR MaLR 0 400 1 1 1779 3249 275 73 35 chr1 156620934 156621447 -40573985 + Lx8 LINE L1 6855 7400 -73 1 1779 22 0 0 0 chr1 156621489 156621511 -40573921 + AT_rich Low_complexity Low_complexity 1 22 0 1 1779 2410 322 70 15 chr1 156621517 156622508 -40572924 + Lx8 LINE L1 6146 7190 -283 1 1779 610 193 80 117 chr1 156622730 156622918 -40572514 + B4 SINE B4 112 292 0 1 1779 379 228 18 23 chr1 156622990 156623161 -40572271 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 1779 664 299 40 35 chr1 156623412 156623613 -40571819 - MER63A DNA AcHobo -3 207 6 1 1779 267 308 99 19 chr1 156623622 156623834 -40571598 + L2a LINE L2 2823 3051 -368 1 1779 230 342 13 0 chr1 156623861 156623937 -40571495 + L2a LINE L2 3115 3191 -235 1 1779 321 191 363 0 chr1 156624145 156624221 -40571211 - Lx7 LINE L1 0 7696 7592 1 1779 492 18 0 0 chr1 156624221 156624278 -40571154 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1779 321 191 363 0 chr1 156624278 156624358 -40571074 - Lx7 LINE L1 -105 7591 7484 1 1779 327 316 187 25 chr1 156624379 156624577 -40570855 - MIRb SINE MIR 0 268 39 1 1779 964 281 101 15 chr1 156624580 156624916 -40570516 + Lx8 LINE L1 7109 7473 0 1 1779 1538 247 61 13 chr1 156625287 156625681 -40569751 + MTD LTR MaLR 7 419 0 1 1779 330 268 194 62 chr1 156626301 156626512 -40568920 + Charlie5 DNA MER1_type 2380 2618 -6 1 1779 297 0 0 0 chr1 156626556 156626589 -40568843 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1779 265 321 66 74 chr1 156626846 156626967 -40568465 - B4 SINE B4 -78 214 95 1 1779 249 245 37 122 chr1 156626871 156626978 -40568454 - MT2B LTR ERVL -341 260 163 1 1779 248 326 101 38 chr1 156626990 156627306 -40568126 + Charlie24 DNA MER1_type 131 466 -1984 1 1779 363 324 52 17 chr1 156627330 156627503 -40567929 + MLT1J LTR MaLR 36 214 -298 1 1779 1025 183 61 5 chr1 156627636 156627850 -40567582 - URR1A DNA MER1_type 0 226 1 1 1779 374 378 52 36 chr1 156628218 156628410 -40567022 + Charlie24 DNA MER1_type 814 1008 -1442 1 1779 218 250 0 56 chr1 156628484 156628628 -40566804 + (CTG)n Simple_repeat Simple_repeat 3 138 0 1 1779 290 226 0 50 chr1 156628679 156628800 -40566632 + (CTG)n Simple_repeat Simple_repeat 3 117 0 1 1779 258 32 0 0 chr1 156628820 156628851 -40566581 + (CTG)n Simple_repeat Simple_repeat 3 33 0 1 1779 374 260 157 30 chr1 156628927 156629157 -40566275 + Charlie24 DNA MER1_type 2164 2422 -28 1 1779 279 342 116 80 chr1 156630550 156630801 -40564631 + LTR16A LTR ERVL 192 451 0 1 1780 936 227 35 20 chr1 156631058 156631260 -40564172 + ID_B1 SINE B4 8 212 -12 1 1780 315 0 0 0 chr1 156631262 156631297 -40564135 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1780 29 28 0 0 chr1 156632447 156632483 -40562949 + AT_rich Low_complexity Low_complexity 1 36 0 1 1780 326 214 0 12 chr1 156633843 156633928 -40561504 + C-rich Low_complexity Low_complexity 2 85 0 1 1780 822 168 6 16 chr1 156633923 156634105 -40561327 + CT-rich Low_complexity Low_complexity 1 180 0 1 1780 313 246 16 0 chr1 156634117 156634178 -40561254 - PB1D10 SINE Alu -24 93 32 1 1780 465 19 0 0 chr1 156634499 156634553 -40560879 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1780 461 301 180 5 chr1 156634595 156634795 -40560637 - B4A SINE B4 -8 284 50 1 1780 456 19 0 0 chr1 156635621 156635674 -40559758 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1780 230 370 68 24 chr1 156636933 156637138 -40558294 - L2 LINE L2 -832 2587 2374 1 1780 734 215 56 131 chr1 156637140 156637233 -40558199 + B4A SINE B4 1 85 -207 1 1780 207 0 0 0 chr1 156637233 156637256 -40558176 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1780 734 215 56 131 chr1 156637256 156637414 -40558018 + B4A SINE B4 86 233 -59 1 1780 459 35 0 0 chr1 156637426 156637483 -40557949 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1780 304 276 32 60 chr1 156637918 156638109 -40557323 - L2c LINE L2 -19 3407 3189 1 1780 347 323 81 0 chr1 156638354 156638478 -40556954 + MIRc SINE MIR 115 248 -20 1 1780 423 56 0 0 chr1 156638872 156638926 -40556506 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1780 252 328 8 57 chr1 156639960 156640083 -40555349 + MLT1A1 LTR MaLR 11 127 -281 1 1780 201 74 0 0 chr1 156640453 156640480 -40554952 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1780 579 234 0 0 chr1 156640566 156640737 -40554695 + (CA)n Simple_repeat Simple_repeat 1 171 0 1 1780 300 358 145 28 chr1 156641385 156641952 -40553480 - L2 LINE L2 -893 2526 1894 1 1780 452 340 96 45 chr1 156642003 156642238 -40553194 - L2 LINE L2 -1791 1628 1373 1 1780 1157 75 0 0 chr1 156642238 156642384 -40553048 + B1_Mm SINE Alu 2 147 0 1 1780 452 340 96 45 chr1 156642384 156642616 -40552816 - L2 LINE L2 -2047 1372 1137 1 1780 2115 151 8 23 chr1 156642764 156643117 -40552315 + ORR1B1 LTR MaLR 47 394 0 1 1780 207 321 169 55 chr1 156643148 156643455 -40551977 - L2 LINE L2 -2409 1010 669 1 1780 398 311 10 0 chr1 156643460 156643563 -40551869 + ID_B1 SINE B4 76 179 -45 1 1780 518 243 0 0 chr1 156643475 156643578 -40551854 + PB1D10 SINE Alu 11 113 -4 1 1780 251 241 0 33 chr1 156643581 156643641 -40551791 + GA-rich Low_complexity Low_complexity 5 62 0 1 1780 886 180 122 20 chr1 156643680 156643884 -40551548 + URR1B DNA MER1_type 1 225 0 1 1780 380 263 25 34 chr1 156644601 156644719 -40550713 - B1F1 SINE Alu -1 148 32 1 1780 298 200 263 0 chr1 156645006 156645101 -40550331 + MIR SINE MIR 85 204 -58 1 1780 473 267 0 3 chr1 156645266 156645658 -40549774 + (CA)n Simple_repeat Simple_repeat 1 390 0 1 1780 219 69 0 0 chr1 156646863 156646892 -40548540 + (GGA)n Simple_repeat Simple_repeat 1 29 0 1 1780 361 289 17 26 chr1 156647151 156647268 -40548164 - Tigger5 DNA MER2_type 0 2406 2291 1 1780 573 242 134 21 chr1 156647263 156647449 -40547983 - Tigger5 DNA MER2_type -2163 243 37 1 1780 2042 139 18 85 chr1 156648113 156648510 -40546922 + ORR1B1 LTR MaLR 27 392 -2 1 1780 310 305 150 13 chr1 156649079 156649232 -40546200 - MIR3 SINE MIR -1 207 34 1 1780 212 374 93 35 chr1 156650246 156650332 -40545100 + L2b LINE L2 3261 3351 -24 1 1780 772 261 82 0 chr1 156650492 156650676 -40544756 + ORR1D2 LTR MaLR 8 206 -164 1 1780 1007 175 125 61 chr1 156650683 156650963 -40544469 - Lx7 LINE L1 0 7696 7399 1 1780 1256 115 11 0 chr1 156650963 156651137 -40544295 + B2_Mm1t SINE B2 1 176 -17 1 1780 294 114 310 26 chr1 156651206 156651322 -40544110 + B2_Mm2 SINE B2 47 195 0 1 1780 840 221 0 32 chr1 156651322 156651509 -40543923 - Lx7 LINE L1 -289 7407 7227 1 1780 485 236 55 8 chr1 156651509 156651637 -40543795 + ORR1D2 LTR MaLR 235 368 -2 1 1780 360 301 107 64 chr1 156652519 156652781 -40542651 - B4 SINE B4 -18 274 3 1 1780 370 250 57 0 chr1 156653373 156653461 -40541971 + B4 SINE B4 196 288 -4 1 1780 243 0 0 0 chr1 156653485 156653512 -40541920 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1780 426 306 86 18 chr1 156653674 156653837 -40541595 - MER58A DNA MER1_type 0 224 51 1 1780 245 328 121 26 chr1 156654392 156654508 -40540924 + MER58B DNA MER1_type 192 318 -23 2 1780 291 361 0 0 chr1 156655132 156655215 -40540217 + L2b LINE L2 3242 3324 -51 2 1780 250 330 98 20 chr1 156655585 156655687 -40539745 + MTEb LTR MaLR 19 128 -231 2 1780 395 250 10 20 chr1 156655796 156655898 -40539534 + MTEb LTR MaLR 279 379 0 2 1780 358 277 104 49 chr1 156657066 156657229 -40538203 - MIRb SINE MIR -88 180 9 2 1780 523 297 4 0 chr1 156657798 156657938 -40537494 + ID_B1 SINE B4 77 213 -11 2 1780 241 342 18 9 chr1 156658516 156658628 -40536804 - L2b LINE L2 -189 3186 3074 2 1780 1314 253 30 78 chr1 156658991 156659373 -40536059 - MTE2a LTR MaLR 0 379 16 2 1780 207 0 0 0 chr1 156659373 156659396 -40536036 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1780 1314 253 30 78 chr1 156659396 156659411 -40536021 - MTE2a LTR MaLR -364 15 1 2 1780 342 265 67 15 chr1 156660242 156660376 -40535056 + MLT1F1 LTR MaLR 1 141 -224 2 1780 210 323 66 48 chr1 156660671 156660837 -40534595 - L3 LINE CR1 -20 4469 4301 2 1780 221 284 118 28 chr1 156661603 156661734 -40533698 + MIRc SINE MIR 37 179 -89 2 1780 22 35 0 0 chr1 156661738 156661767 -40533665 + AT_rich Low_complexity Low_complexity 1 29 0 2 1780 441 299 33 38 chr1 156662504 156662651 -40532781 + ID_B1 SINE B4 1 150 -142 2 1780 203 271 0 0 chr1 156662651 156662699 -40532733 + L2 LINE L2 1993 2040 -1379 2 1780 526 353 54 23 chr1 156662978 156663236 -40532196 + MLT1F1 LTR MaLR 304 569 0 2 1780 1029 307 114 33 chr1 156663237 156663780 -40531652 + L2 LINE L2 2056 2642 -777 2 1780 490 301 54 63 chr1 156663851 156664074 -40531358 - MIR SINE MIR -19 243 23 2 1780 300 263 20 31 chr1 156665322 156665420 -40530012 + MLT1A1 LTR MaLR 300 396 -12 2 1780 251 222 0 18 chr1 156665668 156665723 -40529709 + GA-rich Low_complexity Low_complexity 4 57 0 2 1780 515 315 119 65 chr1 156665873 156666151 -40529281 + LTR33A LTR ERVL 79 371 -149 2 1780 657 0 0 0 chr1 156666239 156666312 -40529120 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1780 5646 78 14 27 chr1 156666312 156667094 -40528338 + Lx3_Mus LINE L1 6237 7008 -1 2 1780 32 0 0 0 chr1 156667095 156667127 -40528305 + AT_rich Low_complexity Low_complexity 1 32 0 2 1780 1592 291 74 24 chr1 156668326 156668906 -40526526 - MER82 DNA MER2_type 0 653 45 2 1780 591 15 0 0 chr1 156670505 156670573 -40524859 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1780 531 0 0 0 chr1 156671167 156671226 -40524206 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1780 241 290 0 61 chr1 156671465 156671564 -40523868 + GA-rich Low_complexity Low_complexity 4 96 0 2 1780 344 271 94 0 chr1 156672686 156672782 -40522650 - B1F1 SINE Alu -8 141 37 2 1780 219 313 28 71 chr1 156673230 156673371 -40522061 + L2a LINE L2 2676 2810 -609 2 1780 268 283 57 24 chr1 156673441 156673564 -40521868 + L2a LINE L2 2953 3079 -347 2 1780 1323 273 134 30 chr1 156674092 156674825 -40520607 - L1MEc LINE L1 -5004 1396 588 2 1780 1705 156 116 29 chr1 156674852 156675196 -40520236 - ORR1D1 LTR MaLR 0 374 1 2 1780 687 291 138 0 chr1 156675203 156675478 -40519954 - L1MEc LINE L1 -6007 393 81 2 1780 755 178 272 0 chr1 156675629 156675798 -40519634 + B3 SINE B2 2 216 0 2 1780 591 320 45 10 chr1 156676009 156676211 -40519221 + MIR SINE MIR 33 241 -21 2 1780 191 326 71 0 chr1 156678007 156678105 -40517327 + MIR SINE MIR 61 165 -97 2 1780 1631 122 225 43 chr1 156678589 156678914 -40516518 - ORR1C2 LTR MaLR 0 384 1 2 1780 873 301 55 26 chr1 156678996 156679341 -40516091 - MLT1A0 LTR MaLR 0 365 11 2 1780 237 294 132 11 chr1 156679501 156679683 -40515749 + L4 LINE RTE 1723 1926 -103 2 1780 638 313 52 0 chr1 156680876 156681087 -40514345 - B4A SINE B4 -70 222 1 2 1780 209 236 36 0 chr1 156683100 156683155 -40512277 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 2 1780 183 80 0 0 chr1 156683162 156683187 -40512245 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 2 1780 384 88 0 0 chr1 156683207 156683264 -40512168 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 2 1780 461 62 15 0 chr1 156684669 156684734 -40510698 + (TTG)n Simple_repeat Simple_repeat 1 66 0 2 1780 585 0 0 0 chr1 156684734 156684799 -40510633 + (TTC)n Simple_repeat Simple_repeat 2 66 0 2 1780 510 257 22 0 chr1 156684823 156684959 -40510473 - ID_B1 SINE B4 -84 140 2 2 1780 379 364 33 22 chr1 156685102 156685282 -40510150 + LTR16A1 LTR ERVL 275 456 0 2 1780 2654 139 42 0 chr1 156685862 156686272 -40509160 + Lx4A LINE L1 6632 7058 0 2 1780 23 0 0 0 chr1 156686272 156686295 -40509137 + AT_rich Low_complexity Low_complexity 1 23 0 2 1780 1197 244 131 48 chr1 156687222 156687785 -40507647 - L1MB7 LINE L1 -19 6165 5556 2 1780 303 315 27 9 chr1 156688021 156688133 -40507299 + MamGypLTR1d LTR Gypsy 683 796 -17 2 1780 513 234 100 15 chr1 156690373 156690503 -40504929 + ID_B1 SINE B4 84 224 0 2 1780 213 200 60 0 chr1 156690506 156690556 -40504876 + GA-rich Low_complexity Low_complexity 3 55 0 2 1780 197 308 15 0 chr1 156691719 156691784 -40503648 - L2b LINE L2 -57 3318 3253 2 1780 445 263 59 0 chr1 156692045 156692163 -40503269 - PB1 SINE Alu -2 125 1 2 1780 288 266 18 44 chr1 156692212 156692326 -40503106 - MTEb LTR MaLR -32 347 237 2 1780 441 0 0 0 chr1 156692342 156692391 -40503041 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1780 714 245 18 41 chr1 156692392 156692562 -40502870 - MTEb LTR MaLR -213 166 1 2 1780 796 254 117 58 chr1 156695661 156696135 -40499297 + RLTR12B LTR ERVK 11 498 -30 2 1780 330 305 66 47 chr1 156696139 156696444 -40498988 + MTEa LTR MaLR 39 370 -9 2 1780 922 278 16 16 chr1 156697191 156697447 -40497985 + B4A SINE B4 37 292 0 2 1780 22 0 0 0 chr1 156697489 156697511 -40497921 + AT_rich Low_complexity Low_complexity 1 22 0 2 1780 211 317 24 14 chr1 156698868 156698985 -40496447 + MIR SINE MIR 32 147 -61 2 1780 1234 167 17 55 chr1 156699355 156699590 -40495842 - URR1A DNA MER1_type 0 226 1 2 1780 374 128 51 0 chr1 156699606 156699684 -40495748 + B2_Mm2 SINE B2 105 186 -9 2 1780 438 20 0 0 chr1 156699698 156699749 -40495683 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 2 1780 913 83 65 6 chr1 156699749 156699773 -40495659 + polypurine Low_complexity Low_complexity 1 24 0 2 1780 1620 0 0 0 chr1 156699773 156699953 -40495479 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1780 913 83 65 6 chr1 156699953 156700097 -40495335 + GA-rich Low_complexity Low_complexity 25 179 0 2 1780 283 361 88 20 chr1 156700528 156700833 -40494599 + L2a LINE L2 3025 3350 -76 2 1780 357 62 0 0 chr1 156700837 156700885 -40494547 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1780 547 228 24 0 chr1 156700902 156701025 -40494407 - B3A SINE B2 -72 126 1 2 1780 231 312 52 0 chr1 156701046 156701123 -40494309 + L2a LINE L2 3345 3425 -1 2 1780 1853 176 107 10 chr1 156701165 156701549 -40493883 - MTC LTR MaLR 0 421 1 2 1780 755 306 108 15 chr1 156701662 156701853 -40493579 - ORR1E LTR MaLR -4 355 138 2 1780 186 43 0 0 chr1 156701853 156701876 -40493556 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 1780 755 306 108 15 chr1 156701876 156702009 -40493423 - ORR1E LTR MaLR -222 137 1 2 1780 546 229 100 0 chr1 156702011 156702177 -40493255 - L1MA5 LINE L1 -265 6035 5856 2 1780 1134 238 44 19 chr1 156702202 156702523 -40492909 - L1MA6 LINE L1 -351 5949 5621 2 1780 339 216 132 20 chr1 156702524 156702675 -40492757 + L1MA5 LINE L1 6130 6297 -3 2 1780 383 301 9 9 chr1 156703329 156703443 -40491989 + PB1D7 SINE Alu 1 114 -6 2 1780 194 262 16 16 chr1 156703446 156703570 -40491862 + GA-rich Low_complexity Low_complexity 3 126 0 2 1780 216 324 0 0 chr1 156703738 156703806 -40491626 + MIRc SINE MIR 163 230 -38 2 1780 1863 191 36 29 chr1 156704318 156704734 -40490698 - MTD LTR MaLR 0 419 1 2 1780 264 333 214 0 chr1 156705231 156705498 -40489934 + L1MC LINE L1 5313 5636 -2246 2 1780 1052 90 157 0 chr1 156705613 156705779 -40489653 + B2_Mm2 SINE B2 2 193 -2 2 1780 740 56 243 0 chr1 156705781 156705888 -40489544 + B1_Mus1 SINE Alu 1 133 -15 2 1780 1382 76 3 0 chr1 156705892 156706234 -40489198 + (GAAA)n Simple_repeat Simple_repeat 1 342 0 2 1780 884 9 0 9 chr1 156706247 156706353 -40489079 + (GGAGA)n Simple_repeat Simple_repeat 1 105 0 2 1780 534 120 18 18 chr1 156706353 156706454 -40488978 + A-rich Low_complexity Low_complexity 11 111 0 2 1780 1338 67 0 0 chr1 156706454 156706632 -40488800 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1780 578 234 239 11 chr1 156706967 156707297 -40488135 + L1MB3 LINE L1 4491 4901 -1242 2 1780 825 282 220 22 chr1 156707315 156707779 -40487653 + L1MB3 LINE L1 5320 5875 -308 2 1780 231 217 0 0 chr1 156707949 156708009 -40487423 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1780 273 340 30 10 chr1 156708101 156708202 -40487230 + MIRc SINE MIR 53 155 -113 2 1780 924 262 95 30 chr1 156709108 156709238 -40486194 - L2 LINE L2 -523 2896 2755 2 1780 1874 170 44 19 chr1 156709238 156709603 -40485829 + ORR1D1 LTR MaLR 1 374 0 2 1780 924 262 95 30 chr1 156709603 156709904 -40485528 - L2 LINE L2 -665 2754 2438 2 1780 195 290 191 57 chr1 156709965 156710195 -40485237 - L2 LINE L2 -1127 2292 2032 2 1780 1104 297 150 53 chr1 156710200 156710340 -40485092 + Lx8 LINE L1 6854 6989 -484 2 1780 558 0 0 0 chr1 156710340 156710402 -40485030 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1780 1104 297 150 53 chr1 156710402 156710746 -40484686 + Lx8 LINE L1 6990 7382 -91 2 1780 7860 42 6 5 chr1 156710746 156711702 -40483730 + L1Md_F2 LINE L1 5626 6582 0 2 1780 1104 297 150 53 chr1 156711702 156711781 -40483651 + Lx8 LINE L1 7383 7472 -1 2 1780 220 348 17 17 chr1 156711800 156711917 -40483515 - L2 LINE L2 -1381 2038 1922 2 1780 243 274 27 14 chr1 156712154 156712228 -40483204 + MER58B DNA MER1_type 257 331 -10 2 1780 563 139 0 10 chr1 156712345 156712447 -40482985 + (TAA)n Simple_repeat Simple_repeat 2 102 0 2 1780 897 272 67 51 chr1 156712461 156713026 -40482406 + L1MC5 LINE L1 7336 7909 -52 2 1780 881 286 18 14 chr1 156713378 156713658 -40481774 + B4A SINE B4 3 283 -9 2 1780 250 241 28 76 chr1 156713705 156713804 -40481628 + RMER17A LTR ERVK 335 429 -322 2 1780 540 0 0 0 chr1 156713804 156713864 -40481568 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1780 250 241 28 76 chr1 156713864 156713908 -40481524 + RMER17A LTR ERVK 430 471 -280 2 1780 1527 235 70 15 chr1 156714341 156714738 -40480694 + MTD LTR MaLR 1 419 0 2 1780 270 315 90 77 chr1 156715723 156716177 -40479255 - L2c LINE L2 -3 3384 2925 3 1780 361 284 41 7 chr1 156716529 156716732 -40478700 + L1MEg LINE L1 1621 1809 -4530 3 1780 1842 307 72 16 chr1 156716852 156718050 -40477382 + L1M2 LINE L1 2025 3268 -2875 3 1780 277 354 44 0 chr1 156718056 156718169 -40477263 + B1F1 SINE Alu 21 138 -11 3 1780 771 159 8 15 chr1 156718208 156718342 -40477090 + B1_Mm SINE Alu 5 137 -10 3 1780 603 40 0 0 chr1 156718362 156718436 -40476996 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 3 1780 233 286 26 13 chr1 156718458 156718536 -40476896 + ID4 SINE ID 3 81 -2 3 1780 563 289 159 17 chr1 156718540 156718938 -40476494 + L1M2 LINE L1 3228 3694 -2449 3 1780 743 274 77 63 chr1 156718925 156719307 -40476125 + L1M2 LINE L1 4043 4480 -1663 3 1780 352 241 50 6 chr1 156719330 156719457 -40475975 + L1M2 LINE L1 5149 5284 -859 3 1780 1065 188 42 19 chr1 156719466 156719678 -40475754 - RMER19B LTR ERVK -11 891 675 3 1780 519 123 0 0 chr1 156719944 156720025 -40475407 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1780 2594 267 165 12 chr1 156720031 156720872 -40474560 - Lx8 LINE L1 -304 7169 6200 3 1780 372 94 0 0 chr1 156720918 156720971 -40474461 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1780 648 246 167 17 chr1 156721036 156721276 -40474156 + Lx8 LINE L1 7193 7468 -5 3 1780 23 0 0 0 chr1 156721278 156721301 -40474131 + AT_rich Low_complexity Low_complexity 1 23 0 3 1780 245 89 22 0 chr1 156721368 156721413 -40474019 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1780 281 252 20 0 chr1 156721415 156721514 -40473918 + (CAGA)n Simple_repeat Simple_repeat 4 104 0 3 1780 203 228 11 0 chr1 156721515 156721607 -40473825 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1780 189 0 0 0 chr1 156724189 156724210 -40471222 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 3 1780 342 323 12 25 chr1 156724244 156724406 -40471026 + GA-rich Low_complexity Low_complexity 3 162 0 3 1780 555 303 55 74 chr1 156725221 156725478 -40469954 + B4 SINE B4 16 267 -25 3 1780 477 0 0 0 chr1 156725482 156725535 -40469897 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1780 1241 228 136 22 chr1 156726631 156726999 -40468433 + MTD LTR MaLR 6 415 -4 3 1780 218 269 60 0 chr1 156727077 156727144 -40468288 - MIR3 SINE MIR -46 162 92 3 1780 506 312 72 10 chr1 156727852 156728059 -40467373 + MIRb SINE MIR 41 260 -8 3 1780 1317 97 17 0 chr1 156728502 156728677 -40466755 + B2_Mm2 SINE B2 2 179 -16 3 1780 623 13 13 0 chr1 156728677 156728753 -40466679 + (GAA)n Simple_repeat Simple_repeat 1 77 0 3 1780 971 161 0 6 chr1 156728755 156728936 -40466496 + GA-rich Low_complexity Low_complexity 1 180 0 3 1780 1599 10 0 0 chr1 156728941 156729144 -40466288 + (GGAGA)n Simple_repeat Simple_repeat 1 203 0 3 1780 240 284 8 15 chr1 156731152 156731305 -40464127 + G-rich Low_complexity Low_complexity 1 151 0 3 1780 500 248 92 7 chr1 156732867 156733009 -40462423 + RSINE1 SINE B4 10 163 -2 3 1780 180 0 0 0 chr1 156733009 156733029 -40462403 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1780 432 0 0 0 chr1 156733799 156733847 -40461585 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1780 266 73 24 0 chr1 156734545 156734586 -40460846 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 3 1780 22 35 0 0 chr1 156734603 156734632 -40460800 + AT_rich Low_complexity Low_complexity 1 29 0 3 1780 486 0 0 0 chr1 156735628 156735682 -40459750 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1780 315 0 0 0 chr1 156736176 156736211 -40459221 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1780 477 0 0 0 chr1 156736545 156736598 -40458834 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1780 483 241 0 0 chr1 156737977 156738064 -40457368 + RSINE1 SINE B4 55 141 -24 3 1780 399 89 0 0 chr1 156738064 156738120 -40457312 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1780 322 316 20 95 chr1 156738526 156738673 -40456759 + MLT1B LTR MaLR 1 136 -254 3 1780 260 258 0 0 chr1 156738739 156738801 -40456631 + ID4_ SINE ID 19 80 -3 3 1780 1117 95 0 7 chr1 156738804 156738953 -40456479 - B1_Mus1 SINE Alu 0 148 1 3 1780 194 98 49 0 chr1 156739075 156739116 -40456316 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 3 1780 1938 92 12 78 chr1 156739666 156740010 -40455422 - ORR1A4 LTR MaLR -8 321 1 3 1780 500 209 70 0 chr1 156740452 156740567 -40454865 + B1F1 SINE Alu 1 123 -26 3 1780 534 171 215 28 chr1 156740874 156741018 -40454414 - MTD LTR MaLR -55 364 194 3 1780 304 308 67 9 chr1 156741060 156741165 -40454267 - MamRep605 Unknown Unknown -310 566 456 3 1780 319 194 44 15 chr1 156741239 156741307 -40454125 + L1MA8 LINE L1 6200 6269 -22 3 1780 459 0 0 0 chr1 156741399 156741450 -40453982 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1780 409 159 0 0 chr1 156741524 156741593 -40453839 - B4 SINE B4 -84 208 140 3 1780 248 135 0 0 chr1 156741591 156741628 -40453804 - B4A SINE B4 -255 37 1 3 1780 408 274 144 87 chr1 156741665 156741908 -40453524 + B4 SINE B4 3 265 -27 3 1780 675 168 134 0 chr1 156741908 156742027 -40453405 + B1_Mus2 SINE Alu 1 135 -12 3 1780 474 65 0 0 chr1 156742031 156742093 -40453339 + (ATG)n Simple_repeat Simple_repeat 3 64 0 3 1780 408 268 21 137 chr1 156742093 156742145 -40453287 + B4 SINE B4 266 280 -12 3 1780 245 319 92 42 chr1 156742266 156742434 -40452998 + MIR3 SINE MIR 4 181 -95 3 1780 702 0 0 0 chr1 156743064 156743142 -40452290 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1780 180 0 0 0 chr1 156743142 156743162 -40452270 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1780 2416 149 12 17 chr1 156744032 156744441 -40450991 + MTB_Mm LTR MaLR 1 407 0 3 1780 1446 330 70 27 chr1 156744463 156745273 -40450159 + L1MEf LINE L1 58 902 -5340 3 1780 410 245 63 21 chr1 156745271 156745413 -40450019 + L1MEf LINE L1 4217 4364 -1782 3 1780 216 316 7 63 chr1 156745429 156745571 -40449861 + ID_B1 SINE B4 83 216 -8 3 1780 432 0 0 0 chr1 156745644 156745692 -40449740 + (TAGG)n Simple_repeat Simple_repeat 4 51 0 3 1780 1065 47 17 17 chr1 156745705 156745877 -40449555 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 3 1780 2842 48 0 0 chr1 156746102 156746439 -40448993 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1780 56438 22 16 7 chr1 156746439 156752858 -40442574 - IAPEz-int LTR ERVK 0 6481 8 3 1780 2743 48 12 0 chr1 156752858 156753191 -40442241 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1780 1055 217 14 5 chr1 156753348 156753561 -40441871 + B3 SINE B2 1 215 -1 3 1780 205 29 29 29 chr1 156753677 156753712 -40441720 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 3 1780 898 272 26 19 chr1 156754349 156754619 -40440813 + B4A SINE B4 2 273 -19 3 1780 591 40 0 0 chr1 156754641 156754715 -40440717 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 1780 413 152 28 21 chr1 156754717 156754858 -40440574 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 1780 23 0 0 0 chr1 156755051 156755074 -40440358 + AT_rich Low_complexity Low_complexity 1 23 0 3 1780 384 22 0 0 chr1 156755322 156755367 -40440065 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1780 404 328 15 30 chr1 156755403 156755535 -40439897 - RSINE1 SINE B4 -16 149 20 3 1780 264 299 106 50 chr1 156756342 156756560 -40438872 + L1MC5 LINE L1 7156 7385 -576 3 1780 1391 284 78 14 chr1 156757389 156757943 -40437489 + L1MA4 LINE L1 5339 5927 -373 3 1780 1296 151 268 35 chr1 156758259 156758424 -40437008 + ORR1C2 LTR MaLR 1 168 -216 3 1780 689 0 12 0 chr1 156758424 156758505 -40436927 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1780 1296 151 268 35 chr1 156758505 156758649 -40436783 + ORR1C2 LTR MaLR 169 382 -2 3 1780 1937 133 18 27 chr1 156759528 156759860 -40435572 - ORR1A4 LTR MaLR 0 329 1 3 1780 1285 153 13 18 chr1 156760007 156760176 -40435256 - URR1B DNA MER1_type 0 225 56 3 1780 206 32 32 0 chr1 156760176 156760207 -40435225 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1780 1285 153 13 18 chr1 156760207 156760263 -40435169 - URR1B DNA MER1_type -170 55 1 3 1780 1148 294 133 24 chr1 156760325 156760872 -40434560 + Lx8 LINE L1 6850 7456 -17 3 1780 375 304 164 36 chr1 156761537 156761756 -40433676 - MamGypLTR2c LTR Gypsy -795 273 27 3 222 603 0 0 0 chr1 156762094 156762161 -40433271 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1781 260 229 44 96 chr1 156762252 156762387 -40433045 - MamRep564 Unknown Unknown -117 240 113 3 1781 518 0 16 0 chr1 156763053 156763115 -40432317 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1781 793 245 190 0 chr1 156763534 156763771 -40431661 + B4A SINE B4 1 282 -10 3 1781 1050 160 2 0 chr1 156764244 156764654 -40430778 + (CA)n Simple_repeat Simple_repeat 1 411 0 3 1781 268 211 42 14 chr1 156764658 156764730 -40430702 + MLT1G3 LTR MaLR 14 87 -492 3 1781 453 356 188 21 chr1 156764777 156765064 -40430368 + MLT1G3 LTR MaLR 165 499 -96 3 1781 210 324 142 9 chr1 156765271 156765377 -40430055 + MIRc SINE MIR 143 262 -6 3 1781 359 219 51 34 chr1 156765519 156765637 -40429795 + L1_Mur2 LINE L1 131 250 -6462 3 1781 3145 177 30 9 chr1 156765648 156766212 -40429220 + Lx5 LINE L1 6475 7050 0 3 1781 2124 271 122 25 chr1 156767051 156767861 -40427571 - Lx8 LINE L1 0 7473 6585 3 1781 320 293 0 0 chr1 156769390 156769465 -40425967 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1781 672 308 29 8 chr1 156769537 156769776 -40425656 - B4A SINE B4 -48 244 1 3 1781 22 56 0 0 chr1 156770933 156770969 -40424463 + AT_rich Low_complexity Low_complexity 1 36 0 3 1781 1586 175 280 10 chr1 156770970 156771374 -40424058 - Lx7 LINE L1 0 7696 7184 3 1781 987 218 39 0 chr1 156771365 156771544 -40423888 + Lx7 LINE L1 6269 6454 -1242 3 1781 2189 143 14 6 chr1 156771541 156771900 -40423532 + Lx6 LINE L1 6597 6958 -502 3 1781 1217 267 51 30 chr1 156772078 156772286 -40423146 - MTEa LTR MaLR 0 379 172 3 1781 495 0 0 0 chr1 156772286 156772341 -40423091 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1781 1217 267 51 30 chr1 156772341 156772502 -40422930 - MTEa LTR MaLR -208 171 2 3 1781 831 283 5 0 chr1 156774211 156774423 -40421009 + RCHARR1 DNA MER1_type 1 213 -761 3 1781 1927 211 66 16 chr1 156774467 156774969 -40420463 + RCHARR1 DNA MER1_type 308 834 -140 3 1781 181 0 0 65 chr1 156774991 156775022 -40420410 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 3 1781 512 305 17 0 chr1 156775028 156775146 -40420286 - RSINE1 SINE B4 -19 146 27 3 1781 1169 209 5 0 chr1 156775188 156775384 -40420048 + B3 SINE B2 2 198 -18 3 1781 549 308 69 54 chr1 156775470 156775542 -40419890 - B4 SINE B4 -2 290 231 4 1781 1115 179 50 10 chr1 156775542 156775740 -40419692 - B3 SINE B2 -10 206 1 4 1781 549 308 69 54 chr1 156775740 156775928 -40419504 - B4 SINE B4 -62 230 26 4 1781 527 205 78 8 chr1 156775942 156776070 -40419362 + RCHARR1 DNA MER1_type 838 974 0 3 1781 316 298 25 8 chr1 156776276 156776398 -40419034 + MLT1B LTR MaLR 38 161 -213 4 1781 415 255 9 0 chr1 156776467 156776573 -40418859 + MLT1B LTR MaLR 284 390 0 4 1781 328 261 119 36 chr1 156776726 156776945 -40418487 + L1MEf LINE L1 100 336 -6064 4 1781 324 64 0 0 chr1 156777099 156777146 -40418286 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1781 228 345 59 30 chr1 156777199 156777572 -40417860 + L1MEf LINE L1 536 919 -5481 4 1781 447 268 20 40 chr1 156777626 156777774 -40417658 - Tigger7 DNA MER2_type -4 2487 2343 4 1781 1273 264 38 16 chr1 156777857 156778223 -40417209 + Lx9 LINE L1 6635 7008 -636 4 1781 395 265 158 29 chr1 156778254 156778753 -40416679 + L1MEf LINE L1 2196 2769 -3550 4 1781 383 207 35 29 chr1 156778780 156778954 -40416478 + (TA)n Simple_repeat Simple_repeat 1 175 0 4 1781 216 158 0 0 chr1 156778979 156779017 -40416415 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1781 329 291 152 15 chr1 156779039 156779433 -40415999 + L1MEf LINE L1 2950 3397 -2922 4 1781 949 294 55 10 chr1 156779444 156779846 -40415586 + L1MEf LINE L1 4604 5023 -1296 4 1781 315 0 0 0 chr1 156779966 156780001 -40415431 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1781 255 243 14 41 chr1 156780004 156780077 -40415355 - MTC LTR MaLR 0 421 351 4 1781 1813 47 3 194 chr1 156780077 156780359 -40415073 + L1Md_F3 LINE L1 1420 1651 -4232 4 1781 8378 40 3 0 chr1 156780359 156781351 -40414081 + L1Md_F2 LINE L1 5587 6581 -1 4 1781 1813 47 3 194 chr1 156781351 156781439 -40413993 + L1Md_F3 LINE L1 1652 1719 -4164 4 1781 5133 9 0 0 chr1 156781432 156782001 -40413431 + L1Md_A LINE L1 5018 5586 -297 4 1781 9239 1 0 0 chr1 156782001 156782997 -40412435 + L1Md_A LINE L1 5587 6582 0 4 1781 31561 46 3 3 chr1 156782999 156783144 -40412288 + L1Md_F3 LINE L1 1703 1847 -4036 4 1781 3750 30 7 2 chr1 156783144 156783578 -40411854 - RLTR10C LTR ERVK 0 436 1 4 1781 31561 46 3 3 chr1 156783578 156787317 -40408115 + L1Md_F3 LINE L1 1848 5586 -297 4 1781 8225 34 19 1 chr1 156787317 156788297 -40407135 + L1Md_F3 LINE L1 5587 6584 0 4 1781 1629 162 99 9 chr1 156788328 156788651 -40406781 - MTC LTR MaLR -68 353 2 4 1781 3682 55 0 0 chr1 156788652 156789162 -40406270 - Lx3_Mus LINE L1 -1056 5953 5447 4 1781 7651 71 10 5 chr1 156789162 156790181 -40405251 + Lx3_Mus LINE L1 5974 6997 -12 4 1781 284 194 14 14 chr1 156790215 156790288 -40405144 + L1MEf LINE L1 5288 5360 -959 4 1781 418 287 48 124 chr1 156790352 156790642 -40404790 - ORR1E LTR MaLR -5 354 87 4 1781 241 298 26 72 chr1 156790799 156790994 -40404438 - L1M5 LINE L1 -767 5379 5194 4 1781 324 0 0 0 chr1 156790994 156791030 -40404402 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1781 254 228 0 17 chr1 156791039 156791097 -40404335 - B1F SINE Alu -92 57 1 4 1781 297 302 60 0 chr1 156791132 156791248 -40404184 + L1MEf LINE L1 5592 5714 -623 4 1781 233 217 57 14 chr1 156791388 156791458 -40403974 + L1ME2 LINE L1 6068 6140 -24 4 1781 1132 262 56 12 chr1 156791868 156792192 -40403240 + MER82 DNA MER2_type 17 354 -299 4 1781 364 353 29 59 chr1 156792922 156793160 -40402272 + L1M5 LINE L1 5487 5717 -407 4 1781 2468 101 0 0 chr1 156793673 156793999 -40401433 - ORR1A3 LTR MaLR 0 326 1 4 1781 387 274 10 10 chr1 156794287 156794390 -40401042 - MER5B DNA MER1_type 0 178 76 4 1781 658 300 0 18 chr1 156794595 156794758 -40400674 - B4 SINE B4 0 292 133 4 1781 2208 131 29 91 chr1 156794817 156795237 -40400195 + ORR1B1 LTR MaLR 1 394 0 4 1781 312 328 88 22 chr1 156795298 156795435 -40399997 - B1F1 SINE Alu 0 149 4 4 1781 1164 48 7 20 chr1 156796208 156796357 -40399075 + B1_Mus1 SINE Alu 2 148 0 4 1781 797 271 135 18 chr1 156796619 156796848 -40398584 + B4 SINE B4 1 256 -36 4 1781 668 204 6 0 chr1 156796865 156797041 -40398391 + CT-rich Low_complexity Low_complexity 2 178 0 4 1781 315 0 0 0 chr1 156797041 156797076 -40398356 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1781 190 255 28 0 chr1 156797629 156797700 -40397732 - MIRb SINE MIR -2 260 192 4 1781 299 312 45 0 chr1 156797778 156797890 -40397542 + MIR SINE MIR 108 224 -38 4 1781 402 202 211 0 chr1 156797892 156797996 -40397436 + RSINE1 SINE B4 1 126 -39 4 1781 344 325 41 12 chr1 156798014 156798185 -40397247 - RMER15 LTR ERVL -20 555 380 4 1781 480 89 0 0 chr1 156798550 156798629 -40396803 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 1781 2273 117 6 0 chr1 156798630 156798955 -40396477 - ORR1A2 LTR MaLR 0 327 1 4 1781 218 316 102 0 chr1 156799506 156799604 -40395828 - MIRb SINE MIR -118 150 43 4 1781 339 65 0 0 chr1 156799815 156799861 -40395571 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1781 390 147 0 0 chr1 156801103 156801171 -40394261 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1781 409 273 175 39 chr1 156801210 156801439 -40393993 - B4A SINE B4 -22 270 11 4 1781 224 226 43 101 chr1 156801382 156801451 -40393981 - ID4_ SINE ID -13 70 6 4 1781 338 203 29 0 chr1 156801502 156801571 -40393861 - ID4_ SINE ID -10 73 3 4 1781 325 229 13 34 chr1 156802115 156802264 -40393168 + GA-rich Low_complexity Low_complexity 2 147 0 4 1781 434 262 64 73 chr1 156803137 156803355 -40392077 + MLT2C1 LTR ERVL 98 313 -84 4 1781 363 89 0 0 chr1 156804434 156804490 -40390942 + (CCCTG)n Simple_repeat Simple_repeat 3 58 0 4 1781 663 259 13 78 chr1 156804574 156804804 -40390628 - B3 SINE B2 0 216 2 4 1781 300 224 30 0 chr1 156804998 156805065 -40390367 + MIR3 SINE MIR 92 160 -48 4 1781 602 282 120 97 chr1 156805317 156805667 -40389765 - ORR1E LTR MaLR 0 359 2 4 1781 233 309 146 51 chr1 156806237 156806460 -40388972 + L2b LINE L2 2402 2648 -771 4 1781 1279 75 57 6 chr1 156806460 156806635 -40388797 + B2_Mm2 SINE B2 2 185 -10 4 1781 195 129 0 0 chr1 156806639 156806670 -40388762 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1781 233 309 146 51 chr1 156806670 156807063 -40388369 + L2b LINE L2 2649 3080 -339 4 1781 325 331 120 21 chr1 156807298 156807440 -40387992 + MLT1I LTR MaLR 256 411 0 4 1781 209 206 112 88 chr1 156807557 156807637 -40387795 + L2b LINE L2 3294 3375 0 4 1781 233 274 53 27 chr1 156808673 156808748 -40386684 + MLT1J LTR MaLR 71 147 -365 4 1781 420 280 0 48 chr1 156808954 156809059 -40386373 + PB1D10 SINE Alu 13 112 -5 4 1781 229 305 53 8 chr1 156809338 156809470 -40385962 + L1M5 LINE L1 5795 5932 -308 4 1781 2460 67 27 9 chr1 156809490 156809821 -40385611 + L1_Mus1 LINE L1 6231 6567 0 4 1781 28 0 0 0 chr1 156809823 156809851 -40385581 + AT_rich Low_complexity Low_complexity 1 28 0 4 1781 628 246 95 6 chr1 156810857 156811025 -40384407 + B3A SINE B2 1 183 -15 4 1781 182 342 60 26 chr1 156811630 156811747 -40383685 - MIR SINE MIR -77 185 65 4 1781 314 350 52 57 chr1 156812183 156812395 -40383037 - L3 LINE CR1 -3458 1031 821 4 1781 4345 120 66 30 chr1 156812528 156813473 -40381959 + RMER17B LTR ERVK 1 958 0 4 1781 186 189 0 0 chr1 156813773 156813810 -40381622 + T-rich Low_complexity Low_complexity 1 37 0 4 1781 9944 14 0 0 chr1 156813826 156815622 -40379810 - L1Md_A LINE L1 0 6582 4787 4 1781 235 380 141 10 chr1 156816138 156816436 -40378996 + LTR33 LTR ERVL 38 374 -141 4 1781 3999 115 22 95 chr1 156816768 156817578 -40377854 + RMER17A LTR ERVK 1 751 0 4 1781 498 33 0 0 chr1 156817607 156817667 -40377765 + (CATA)n Simple_repeat Simple_repeat 3 62 0 4 1781 353 349 116 16 chr1 156817922 156818242 -40377190 + LTR33A LTR ERVL 166 517 -3 4 1781 645 251 133 20 chr1 156819213 156819408 -40376024 - MTEb LTR MaLR -12 367 151 4 1781 1566 107 35 101 chr1 156819414 156819759 -40375673 - ORR1B1 LTR MaLR -32 362 41 4 1781 562 250 0 8 chr1 156819769 156819890 -40375542 - MTEb LTR MaLR -227 152 33 4 1781 2655 155 28 22 chr1 156820060 156820569 -40374863 + RLTR11A LTR ERVK 17 528 0 4 1781 225 226 38 0 chr1 156820758 156820811 -40374621 - MER5A DNA MER1_type -61 128 74 4 1781 580 332 21 79 chr1 156821250 156821629 -40373803 - ORR1E LTR MaLR -2 357 1 4 1781 208 294 128 0 chr1 156821695 156821804 -40373628 + L2 LINE L2 2730 2852 -567 4 1781 271 283 28 19 chr1 156822055 156822163 -40373269 + MLT1D LTR MaLR 389 497 -8 4 1781 369 292 103 39 chr1 156822397 156822518 -40372914 - LTR16A LTR ERVL -2 449 309 4 1781 2420 190 16 86 chr1 156822518 156823064 -40372368 - RLTR18B LTR ERVK -4 508 1 4 1781 369 292 103 39 chr1 156823064 156823145 -40372287 - LTR16A LTR ERVL -143 308 234 4 1781 563 299 41 0 chr1 156823146 156823293 -40372139 + RSINE1 SINE B4 6 158 -7 4 1781 287 159 65 9 chr1 156823303 156823411 -40372021 + (CATA)n Simple_repeat Simple_repeat 1 114 0 4 1781 5896 48 1 4 chr1 156823470 156824187 -40371245 + L1Md_F2 LINE L1 5867 6581 -1 4 1781 961 314 26 40 chr1 156824213 156824591 -40370841 - MTEb LTR MaLR -6 373 1 4 1781 651 37 0 0 chr1 156824686 156824768 -40370664 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1781 1956 128 18 91 chr1 156825751 156826095 -40369337 + ORR1B2 LTR MaLR 1 327 -40 4 1781 3055 78 5 10 chr1 156826095 156826511 -40368921 + L1Md_F2 LINE L1 6169 6582 0 4 1781 1956 128 18 91 chr1 156826511 156826562 -40368870 + ORR1B2 LTR MaLR 328 367 0 4 1781 684 168 0 0 chr1 156826736 156826861 -40368571 + GA-rich Low_complexity Low_complexity 2 126 0 4 1781 219 103 0 0 chr1 156826862 156826891 -40368541 + (GGA)n Simple_repeat Simple_repeat 2 30 0 4 1781 229 311 8 4 chr1 156828745 156828848 -40366584 + MIR SINE MIR 76 182 -86 4 1781 292 328 105 82 chr1 156829081 156829300 -40366132 - MLT1H LTR MaLR -224 325 102 4 1781 230 229 21 0 chr1 156829636 156829684 -40365748 + GA-rich Low_complexity Low_complexity 2 50 0 4 1781 223 318 54 18 chr1 156830714 156830826 -40364606 - L2b LINE L2 -20 3355 3240 4 1781 233 309 50 20 chr1 156831825 156831924 -40363508 + PB1D10 SINE Alu 1 102 -15 4 1781 917 119 295 28 chr1 156832174 156832498 -40362934 - Lx4A LINE L1 -2 7056 6648 4 1781 229 317 58 41 chr1 156832528 156832565 -40362867 - Arthur1C DNA Tip100 -57 306 271 4 1781 3151 42 36 8 chr1 156832565 156832950 -40362482 + MTA_Mm LTR MaLR 1 396 0 4 1781 288 317 58 41 chr1 156832950 156833083 -40362349 - Arthur1C DNA Tip100 -93 270 133 4 1781 1842 192 28 39 chr1 156833762 156833898 -40361534 + ORR1B2 LTR MaLR 1 131 -236 4 1781 8208 33 0 0 chr1 156833898 156834827 -40360605 + RLTR13B3 LTR ERVK 1 929 0 4 1781 1842 192 28 39 chr1 156834827 156835053 -40360379 + ORR1B2 LTR MaLR 132 359 -8 4 1781 962 107 9 22 chr1 156835611 156835841 -40359591 + (TAGA)n Simple_repeat Simple_repeat 1 227 0 4 1781 181 277 15 44 chr1 156835961 156836029 -40359403 - L2 LINE L2 -3284 135 70 4 1781 337 310 53 23 chr1 156836599 156836731 -40358701 - LTR90B LTR LTR 0 796 661 4 1781 628 240 67 0 chr1 156836806 156836956 -40358476 + RSINE1 SINE B4 6 165 0 4 1781 2597 83 3 0 chr1 156836983 156837309 -40358123 + ORR1A2 LTR MaLR 1 327 0 4 1781 376 284 18 18 chr1 156837550 156837661 -40357771 - Tigger5 DNA MER2_type -4 2402 2292 5 1781 605 321 40 44 chr1 156837645 156837896 -40357536 - Tigger5 DNA MER2_type -2156 250 1 5 1781 2730 169 46 20 chr1 156838838 156839383 -40356049 + RLTR31_Mm LTR ERVK 1 559 -2 5 1781 220 208 0 0 chr1 156839526 156839579 -40355853 + A-rich Low_complexity Low_complexity 1 53 0 5 1781 398 219 0 17 chr1 156840324 156840440 -40354992 + (TGG)n Simple_repeat Simple_repeat 1 114 0 5 1781 298 356 90 18 chr1 156840443 156840609 -40354823 + MT2A LTR ERVL 234 411 -122 5 1781 254 29 29 0 chr1 156840683 156840718 -40354714 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1781 356 298 0 67 chr1 156840745 156840835 -40354597 - RSINE1 SINE B4 0 165 82 5 1781 190 100 19 39 chr1 156840902 156840954 -40354478 + T-rich Low_complexity Low_complexity 4 54 0 5 1781 303 308 88 66 chr1 156840972 156840983 -40354449 - ID_B1 SINE B4 0 224 214 5 1781 1224 41 0 39 chr1 156840983 156841136 -40354296 - B1_Mus2 SINE Alu 0 147 1 5 1781 303 308 88 66 chr1 156841136 156841305 -40354127 - ID_B1 SINE B4 -11 213 40 5 1781 183 348 130 0 chr1 156842207 156842276 -40353156 - MER5A DNA MER1_type -53 136 59 5 1781 217 231 0 0 chr1 156842429 156842468 -40352964 + ID4 SINE ID 2 40 -43 5 1781 28 48 0 0 chr1 156842468 156842510 -40352922 + AT_rich Low_complexity Low_complexity 1 42 0 5 1781 194 355 47 54 chr1 156844803 156844952 -40350480 + L2a LINE L2 3021 3168 -258 5 1781 303 227 5 80 chr1 156844962 156845073 -40350359 + MTEa LTR MaLR 1 150 -229 5 1781 574 274 0 15 chr1 156845073 156845210 -40350222 - MTE-int LTR MaLR -1172 408 274 5 1781 928 169 97 16 chr1 156845208 156845394 -40350038 + MTEa LTR MaLR 168 368 -11 5 1781 478 281 9 0 chr1 156845934 156846048 -40349384 + MTE-int LTR MaLR 1228 1342 -238 5 1781 489 293 120 0 chr1 156846181 156846314 -40349118 - RSINE1 SINE B4 -14 151 3 5 1781 1119 112 88 0 chr1 156846386 156846556 -40348876 + B2_Mm2 SINE B2 2 186 -9 5 1781 200 265 0 42 chr1 156846727 156846798 -40348634 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1781 1868 163 54 6 chr1 156847495 156847828 -40347604 - ORR1B1 LTR MaLR -4 390 42 5 1781 496 289 47 0 chr1 156848091 156848267 -40347165 + MIR SINE MIR 2 192 -76 5 1781 297 303 26 0 chr1 156848303 156848379 -40347053 + MTE2b LTR MaLR 10 87 -292 5 1781 330 278 105 132 chr1 156848312 156848449 -40346983 + MT2B LTR ERVL 19 152 -449 5 1781 710 215 125 31 chr1 156848449 156848641 -40346791 + B3 SINE B2 2 211 -5 5 1781 676 217 23 30 chr1 156848646 156848779 -40346653 + B1_Mur3 SINE Alu 1 132 -17 5 1781 321 26 0 0 chr1 156848782 156848820 -40346612 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1781 273 311 189 32 chr1 156848928 156849177 -40346255 - MLT2B5 LTR ERVL -238 363 76 5 1781 216 0 0 0 chr1 156849461 156849485 -40345947 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1781 4952 179 66 11 chr1 156849941 156850970 -40344462 + Lx5 LINE L1 5965 7050 0 5 1781 21 0 0 0 chr1 156850973 156850994 -40344438 + AT_rich Low_complexity Low_complexity 1 21 0 5 1781 738 144 0 17 chr1 156851055 156851175 -40344257 - B1_Mur3 SINE Alu 0 149 32 5 1781 833 89 8 0 chr1 156851828 156851952 -40343480 + (GGAA)n Simple_repeat Simple_repeat 3 127 0 5 1781 498 357 7 0 chr1 156853211 156853351 -40342081 - L2b LINE L2 -17 3358 3218 5 1781 194 273 29 43 chr1 156853430 156853499 -40341933 - MIRc SINE MIR -120 148 81 5 1781 306 310 40 24 chr1 156854322 156854510 -40340922 + ORR1E LTR MaLR 11 194 -190 5 1781 324 0 0 0 chr1 156854584 156854620 -40340812 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1781 226 273 15 29 chr1 156854658 156854726 -40340706 + ORR1E LTR MaLR 250 316 -43 5 1781 28 29 0 0 chr1 156854908 156854943 -40340489 + AT_rich Low_complexity Low_complexity 1 35 0 5 1781 647 157 21 6 chr1 156854957 156855075 -40340357 - B1_Mus2 SINE Alu -2 145 2 5 1781 1867 128 117 9 chr1 156855456 156855592 -40339840 + ORR1B2 LTR MaLR 1 169 -198 5 1781 666 0 0 0 chr1 156855592 156855666 -40339766 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1781 1867 128 117 9 chr1 156855666 156855853 -40339579 + ORR1B2 LTR MaLR 170 358 -9 5 1781 217 310 57 65 chr1 156857791 156857915 -40337517 - L2c LINE L2 -8 3379 3257 5 1781 386 39 19 0 chr1 156857926 156857978 -40337454 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1781 318 253 93 0 chr1 156858493 156858568 -40336864 + ID4 SINE ID 2 83 0 5 1781 21 0 0 0 chr1 156858573 156858594 -40336838 + AT_rich Low_complexity Low_complexity 1 21 0 5 1781 713 329 9 14 chr1 156858647 156858866 -40336566 + B4A SINE B4 1 218 -74 5 1781 447 232 74 44 chr1 156859035 156859170 -40336262 + MIRb SINE MIR 74 212 -56 5 1781 253 247 169 0 chr1 156859235 156859324 -40336108 + B1F SINE Alu 32 135 -14 5 1781 975 129 0 0 chr1 156859326 156859481 -40335951 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 5 1781 243 202 0 0 chr1 156859582 156859671 -40335761 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1781 408 227 0 0 chr1 156859703 156859853 -40335579 + (CA)n Simple_repeat Simple_repeat 2 151 0 5 1781 1319 93 11 21 chr1 156859978 156860165 -40335267 + B2_Mm1a SINE B2 1 185 -8 5 1781 593 308 126 67 chr1 156860193 156860597 -40334835 - MLT1J2 LTR MaLR 0 448 21 5 1781 189 233 135 14 chr1 156861864 156861938 -40333494 - L2a LINE L2 -75 3351 3269 5 1781 332 270 33 11 chr1 156862029 156862119 -40333313 + B4A SINE B4 2 93 -199 5 1781 1095 80 7 7 chr1 156862199 156862350 -40333082 + URR1A DNA MER1_type 76 226 0 5 1781 708 249 90 23 chr1 156862636 156862813 -40332619 + B4 SINE B4 104 292 0 5 1781 260 217 17 0 chr1 156862813 156862873 -40332559 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1781 618 269 28 22 chr1 156862922 156863101 -40332331 - MLT2C1 LTR ERVL -41 356 177 5 1781 320 230 170 0 chr1 156863409 156863509 -40331923 + PB1D10 SINE Alu 1 117 0 5 1781 231 257 27 0 chr1 156863515 156863589 -40331843 + L1M5 LINE L1 5240 5315 -831 5 1781 720 265 48 133 chr1 156863602 156863955 -40331477 + MTE2a LTR MaLR 1 323 -56 5 1781 477 0 0 0 chr1 156863957 156864010 -40331422 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 5 1781 1302 215 51 18 chr1 156864079 156864354 -40331078 - MTEa LTR MaLR -95 284 1 5 1781 502 66 0 13 chr1 156864407 156864484 -40330948 - L1Md_F2 LINE L1 -12 6570 6495 5 1781 1803 157 35 83 chr1 156864565 156864961 -40330471 + RMER10B LTR ERVL 22 398 0 5 1781 583 189 98 8 chr1 156865245 156865368 -40330064 + B1_Mus2 SINE Alu 2 135 -12 5 1781 513 0 0 0 chr1 156865370 156865427 -40330005 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 5 1781 248 330 18 18 chr1 156866319 156866433 -40328999 + Lx8 LINE L1 7231 7344 -129 5 1781 1151 267 42 42 chr1 156866496 156866875 -40328557 - MTE2b LTR MaLR 0 379 1 5 1781 303 283 23 62 chr1 156866926 156867054 -40328378 - L1MB7 LINE L1 -46 6138 6016 5 1781 442 206 0 61 chr1 156867058 156867133 -40328299 + B1_Mur3 SINE Alu 58 127 -22 5 1781 228 35 0 0 chr1 156867133 156867162 -40328270 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1781 442 206 0 61 chr1 156867162 156867184 -40328248 + B1_Mur3 SINE Alu 128 149 0 5 1781 549 0 0 0 chr1 156867211 156867272 -40328160 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 5 1781 309 235 122 0 chr1 156867535 156867650 -40327782 - L1M2 LINE L1 -480 5811 5683 5 1781 234 0 0 0 chr1 156868132 156868158 -40327274 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1781 519 95 0 0 chr1 156868231 156868305 -40327127 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 5 1781 1452 44 0 0 chr1 156868305 156868485 -40326947 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1781 1569 144 68 96 chr1 156868496 156868728 -40326704 + RMER15 LTR ERVL 228 464 -111 5 1781 1416 93 0 30 chr1 156868728 156868928 -40326504 + B2_Mm2 SINE B2 1 194 -1 5 1781 1569 144 68 96 chr1 156868928 156869018 -40326414 + RMER15 LTR ERVL 465 541 -34 5 1781 593 282 209 61 chr1 156869068 156869431 -40326001 + RMER21A LTR ERV1 419 835 -112 5 1781 544 283 16 8 chr1 156869604 156869732 -40325700 + B1F SINE Alu 1 129 -20 5 1781 273 98 0 0 chr1 156869759 156869800 -40325632 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 1781 477 0 0 0 chr1 156869800 156869852 -40325580 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 1781 286 304 85 85 chr1 156871734 156871935 -40323497 - Charlie18a DNA MER1_type -111 231 31 5 1781 710 232 116 0 chr1 156872102 156872300 -40323132 + ID_B1 SINE B4 2 222 -2 5 1781 695 172 0 110 chr1 156872313 156872476 -40322956 + B1_Mur3 SINE Alu 5 149 0 5 1781 268 127 18 18 chr1 156872477 156872533 -40322899 + GA-rich Low_complexity Low_complexity 2 57 0 5 1781 1599 6 0 0 chr1 156872534 156872714 -40322718 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1781 414 0 0 0 chr1 156872718 156872764 -40322668 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 5 1781 266 243 73 27 chr1 156872766 156872876 -40322556 + Charlie5 DNA MER1_type 2418 2532 -92 5 1781 262 262 142 0 chr1 156873362 156873460 -40321972 + MIRb SINE MIR 20 131 -77 5 1781 966 268 43 29 chr1 156873763 156874043 -40321389 + B4A SINE B4 9 292 0 5 1781 471 220 0 0 chr1 156874049 156874181 -40321251 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1781 1345 89 21 16 chr1 156874232 156874425 -40321007 + B2_Mm2 SINE B2 2 195 0 5 1781 540 0 0 0 chr1 156875019 156875079 -40320353 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1781 489 310 109 69 chr1 156875129 156875403 -40320029 + MLT1A LTR MaLR 84 368 -6 5 1781 438 289 94 0 chr1 156875688 156875847 -40319585 - MER5B DNA MER1_type -4 174 1 5 1781 1111 243 58 58 chr1 156877196 156877572 -40317860 - MTE2a LTR MaLR 0 379 4 5 1781 465 245 29 19 chr1 156878722 156878826 -40316606 + B1F SINE Alu 41 145 -4 5 1781 240 208 21 0 chr1 156879104 156879152 -40316280 - PB1D10 SINE Alu -68 49 1 5 1781 251 248 147 37 chr1 156879396 156879505 -40315927 - MTEa LTR MaLR -56 323 203 5 1781 261 174 11 21 chr1 156879515 156879702 -40315730 + (CAGA)n Simple_repeat Simple_repeat 1 185 0 6 1781 672 121 22 45 chr1 156879675 156879952 -40315480 + (CAGAGA)n Simple_repeat Simple_repeat 1 270 0 6 1781 228 333 108 31 chr1 156880164 156880294 -40315138 + MIR SINE MIR 31 170 -92 6 1781 533 362 50 25 chr1 156880563 156880846 -40314586 - B4 SINE B4 -1 291 2 6 1781 357 309 74 0 chr1 156880859 156881008 -40314424 - L1M5 LINE L1 -2129 5753 5594 6 1781 387 278 145 14 chr1 156881138 156881329 -40314103 - L1M5 LINE L1 -861 5472 5258 6 1781 219 36 0 0 chr1 156881422 156881450 -40313982 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1781 368 315 110 29 chr1 156881592 156881801 -40313631 - L1M5 LINE L1 -1176 4970 4745 6 1781 189 107 0 0 chr1 156881806 156881834 -40313598 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1781 306 318 31 92 chr1 156882135 156882298 -40313134 - RLTR18 LTR ERVK -431 185 33 6 1781 201 74 0 0 chr1 156882323 156882350 -40313082 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 6 1781 668 142 0 45 chr1 156882362 156882473 -40312959 - B1_Mur3 SINE Alu 0 149 44 6 1781 303 354 0 10 chr1 156882806 156882903 -40312529 - MER77 LTR ERVL -48 559 464 6 1781 528 16 0 0 chr1 156882942 156883003 -40312429 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1781 188 32 0 88 chr1 156883224 156883258 -40312174 + (TGGGGG)n Simple_repeat Simple_repeat 2 32 0 6 1781 337 303 87 27 chr1 156883762 156883911 -40311521 - MER77 LTR ERVL -397 210 53 6 1781 816 266 19 19 chr1 156884187 156884394 -40311038 - B3 SINE B2 -5 211 5 6 1781 702 270 162 40 chr1 156884520 156884959 -40310473 - MLT2B4 LTR ERVL -4 563 4 6 1781 708 220 0 8 chr1 156885062 156885195 -40310237 - ID_B1 SINE B4 -5 219 88 6 1781 432 0 0 0 chr1 156885203 156885251 -40310181 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1781 267 172 34 17 chr1 156885256 156885315 -40310117 + (CATA)n Simple_repeat Simple_repeat 3 62 0 6 1781 520 239 0 27 chr1 156885315 156885500 -40309932 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1781 412 318 38 43 chr1 156885732 156885916 -40309516 - MIR SINE MIR -23 239 57 6 1781 623 194 30 30 chr1 156887169 156887302 -40308130 - B1_Mur1 SINE Alu 0 149 17 6 1781 211 176 0 0 chr1 156887455 156887489 -40307943 + C-rich Low_complexity Low_complexity 1 34 0 6 1781 387 0 0 0 chr1 156887827 156887870 -40307562 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1781 295 292 38 154 chr1 156888289 156888538 -40306894 - ORR1D2 LTR MaLR -102 268 52 6 1781 693 0 0 0 chr1 156888540 156888617 -40306815 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1781 233 318 91 34 chr1 156888938 156889026 -40306406 - L2a LINE L2 -6 3420 3277 6 1781 304 319 75 30 chr1 156889022 156889287 -40306145 + L2c LINE L2 2506 2782 -637 6 1781 198 0 0 0 chr1 156889404 156889426 -40306006 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1781 1411 258 41 32 chr1 156889426 156889654 -40305778 - MTE2b LTR MaLR -30 349 121 6 1781 1420 207 112 0 chr1 156889654 156889983 -40305449 - ORR1D2 LTR MaLR -4 366 1 6 1781 1411 258 41 32 chr1 156889983 156890095 -40305337 - MTE2b LTR MaLR -259 120 6 6 1781 334 332 49 58 chr1 156890147 156890371 -40305061 + MER77 LTR ERVL 133 354 -253 6 1781 243 0 0 0 chr1 156890447 156890474 -40304958 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1781 23 33 0 0 chr1 156890509 156890539 -40304893 + AT_rich Low_complexity Low_complexity 1 30 0 6 1781 388 349 52 22 chr1 156890889 156891150 -40304282 + L2c LINE L2 2936 3200 -226 6 1781 362 254 132 0 chr1 156891632 156891746 -40303686 - B1_Mur1 SINE Alu -18 131 3 6 1781 2213 142 42 3 chr1 156891792 156891943 -40303489 + ORR1B2 LTR MaLR 1 151 -216 6 1781 696 35 0 0 chr1 156891943 156892030 -40303402 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1781 2213 142 42 3 chr1 156892030 156892231 -40303201 + ORR1B2 LTR MaLR 152 365 -2 6 1781 324 217 43 0 chr1 156892594 156892663 -40302769 + B1_Mur3 SINE Alu 1 72 -77 6 1781 263 349 24 0 chr1 156892663 156892677 -40302755 + B4A SINE B4 86 170 -122 6 1781 334 340 165 14 chr1 156892677 156893029 -40302403 + L1MC4 LINE L1 7138 7542 -500 6 1781 273 278 43 22 chr1 156893040 156893051 -40302381 + ID_B1 SINE B4 78 171 -53 6 1781 339 202 49 25 chr1 156893051 156893132 -40302300 + PB1D10 SINE Alu 8 90 -27 6 1782 427 289 25 0 chr1 156893416 156893537 -40301895 - Tigger5 DNA MER2_type 0 2406 2283 6 1782 561 330 89 13 chr1 156893523 156893747 -40301685 - Tigger5 DNA MER2_type -2163 243 6 6 1782 1071 63 35 7 chr1 156893842 156893985 -40301447 + B1_Mus1 SINE Alu 2 148 0 6 1782 1300 55 66 11 chr1 156894012 156894195 -40301237 + B2_Mm2 SINE B2 1 193 -2 6 1782 180 0 0 0 chr1 156894237 156894257 -40301175 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1782 182 33 0 62 chr1 156894313 156894345 -40301087 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1782 1404 223 67 25 chr1 156895483 156895842 -40299590 + MTE2a LTR MaLR 6 379 0 6 1782 415 238 124 119 chr1 156896860 156896996 -40298436 + ID_B1 SINE B4 2 150 -74 6 1782 748 124 412 0 chr1 156896996 156897149 -40298283 + B3 SINE B2 1 216 0 6 1782 415 238 124 119 chr1 156897149 156897222 -40298210 + ID_B1 SINE B4 151 212 -12 6 1782 391 210 124 16 chr1 156898323 156898444 -40296988 - MIRc SINE MIR -117 151 18 6 1782 202 288 49 90 chr1 156898969 156899091 -40296341 - L3 LINE CR1 -617 3872 3756 6 1782 504 0 0 0 chr1 156899744 156899800 -40295632 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1782 447 163 0 0 chr1 156900784 156900907 -40294525 + GA-rich Low_complexity Low_complexity 58 180 0 6 1782 642 133 28 9 chr1 156900965 156901071 -40294361 + B1_Mur4 SINE Alu 43 150 0 6 1782 842 170 0 12 chr1 156901102 156901269 -40294163 + GA-rich Low_complexity Low_complexity 4 168 0 6 1782 405 0 0 0 chr1 156901600 156901645 -40293787 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1782 186 118 0 0 chr1 156902032 156902066 -40293366 + (G)n Simple_repeat Simple_repeat 1 34 0 6 1782 1141 186 55 0 chr1 156902553 156902752 -40292680 + B3 SINE B2 1 210 -6 6 1782 28 0 0 0 chr1 156902755 156902783 -40292649 + AT_rich Low_complexity Low_complexity 1 28 0 6 1782 1294 183 157 69 chr1 156902900 156903276 -40292156 + RMER10A LTR ERVL 11 419 -23 6 1782 625 234 58 7 chr1 156903802 156903940 -40291492 + B1_Mur1 SINE Alu 5 149 0 6 1782 974 260 42 68 chr1 156904229 156904538 -40290894 + MTEa LTR MaLR 2 302 -77 6 1782 396 94 153 0 chr1 156904775 156904860 -40290572 + L1Md_F3 LINE L1 6487 6584 0 6 1782 423 0 0 0 chr1 156904902 156904949 -40290483 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1782 1676 201 94 33 chr1 156905123 156905518 -40289914 - MTD LTR MaLR 0 419 1 6 1782 225 0 0 0 chr1 156905919 156905944 -40289488 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1782 551 182 0 6 chr1 156907116 156907287 -40288145 + (TG)n Simple_repeat Simple_repeat 2 171 0 6 1782 574 277 120 66 chr1 156907338 156907612 -40287820 - B4A SINE B4 -2 290 2 6 1782 880 274 17 107 chr1 156907697 156907973 -40287459 - ID_B1 SINE B4 -28 264 2 6 1782 254 309 0 0 chr1 156908111 156908179 -40287253 + MIRb SINE MIR 59 126 -142 6 1782 1055 272 10 53 chr1 156909519 156909818 -40285614 - B4A SINE B4 -6 286 1 6 1782 456 72 0 0 chr1 156909958 156910027 -40285405 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1782 354 250 99 9 chr1 156910624 156910760 -40284672 - MIRb SINE MIR -78 190 34 6 1782 340 308 21 15 chr1 156910985 156911010 -40284422 + ID_B1 SINE B4 65 144 -80 6 1782 477 242 0 0 chr1 156911010 156911101 -40284331 + PB1D10 SINE Alu 1 91 -26 6 1782 273 255 245 39 chr1 156912030 156912340 -40283092 + L2b LINE L2 2689 3062 -357 6 1782 180 311 0 0 chr1 156912525 156912570 -40282862 + L2b LINE L2 3330 3374 -1 6 1782 635 283 102 39 chr1 156912752 156912958 -40282474 + ID_B1 SINE B4 1 219 -5 6 1782 443 176 11 0 chr1 156913170 156913261 -40282171 + GA-rich Low_complexity Low_complexity 2 93 0 6 1782 292 309 88 7 chr1 156913530 156913667 -40281765 + Charlie16a DNA MER1_type 83 230 -112 6 1782 2578 129 65 0 chr1 156913971 156914383 -40281049 + RLTR11B LTR ERVK 1 439 -14 6 1782 1118 57 0 14 chr1 156915860 156916003 -40279429 - B2_Mm2 SINE B2 -54 141 1 6 1782 211 233 15 77 chr1 156917178 156917243 -40278189 + MIRm SINE MIR 162 222 -54 6 1782 1114 242 76 25 chr1 156917355 156917631 -40277801 + B4A SINE B4 3 292 0 6 1782 365 205 0 15 chr1 156917662 156917749 -40277683 + PB1D10 SINE Alu 42 117 0 6 1782 234 369 27 23 chr1 156919493 156919692 -40275740 - MIRc SINE MIR -6 202 2 6 1782 393 22 0 0 chr1 156919718 156919764 -40275668 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1782 234 245 0 0 chr1 156919968 156920017 -40275415 + C-rich Low_complexity Low_complexity 4 52 0 6 1782 342 294 49 0 chr1 156920018 156920120 -40275312 - PB1D7 SINE Alu -11 109 3 6 1782 410 250 48 0 chr1 156920700 156920804 -40274628 - MER5A DNA MER1_type -78 111 3 6 1782 195 244 163 22 chr1 156922474 156922566 -40272866 - MIRm SINE MIR -127 149 45 6 1782 456 19 0 0 chr1 156922678 156922731 -40272701 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1782 504 0 0 0 chr1 156922731 156922786 -40272646 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1782 387 326 66 33 chr1 156922791 156922943 -40272489 - B3A SINE B2 -41 157 1 6 1782 291 298 123 61 chr1 156923271 156923491 -40271941 - L2a LINE L2 0 3426 3150 6 1782 684 129 0 0 chr1 156923654 156923755 -40271677 + B1_Mus1 SINE Alu 36 136 -12 6 1782 754 86 0 19 chr1 156923754 156923855 -40271577 + B1_Mus1 SINE Alu 32 132 -16 6 1782 1017 0 0 0 chr1 156923855 156923968 -40271464 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 6 1782 582 15 0 0 chr1 156923968 156924034 -40271398 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 6 1782 682 285 0 0 chr1 156924224 156924368 -40271064 + ID_B1 SINE B4 81 224 0 6 1782 183 72 47 23 chr1 156924724 156924767 -40270665 + (CCCCCA)n Simple_repeat Simple_repeat 2 45 0 6 1782 641 271 7 0 chr1 156926178 156926318 -40269114 - ID_B1 SINE B4 0 224 84 7 1782 236 271 186 0 chr1 156927002 156927015 -40268417 + BC1_Mm scRNA scRNA 1 70 -82 7 1782 262 239 0 0 chr1 156927015 156927061 -40268371 + ID SINE ID 26 71 -153 7 1782 843 211 0 2 chr1 156927078 156927493 -40267939 + (CA)n Simple_repeat Simple_repeat 1 413 0 7 1782 198 143 0 0 chr1 156928189 156928224 -40267208 + (TCTCCC)n Simple_repeat Simple_repeat 4 38 0 7 1782 721 217 6 38 chr1 156928224 156928382 -40267050 + RSINE1 SINE B4 6 158 -7 7 1782 226 242 105 105 chr1 156928229 156928400 -40267032 + B2_Mm2 SINE B2 10 180 -15 7 1782 691 271 2 45 chr1 156928414 156928598 -40266834 - B3 SINE B2 0 216 39 7 1782 851 187 14 0 chr1 156928772 156928911 -40266521 - B1_Mur3 SINE Alu -7 142 2 7 1782 381 269 18 9 chr1 156928917 156929026 -40266406 - ID_B1 SINE B4 -1 223 114 7 1782 180 176 0 0 chr1 156929401 156929435 -40265997 + CT-rich Low_complexity Low_complexity 4 37 0 7 1782 450 0 0 0 chr1 156929533 156929583 -40265849 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1782 25 0 0 0 chr1 156930363 156930388 -40265044 + GC_rich Low_complexity Low_complexity 1 25 0 7 1782 30 27 0 0 chr1 156930565 156930602 -40264830 + GC_rich Low_complexity Low_complexity 1 37 0 7 1782 21 0 0 0 chr1 156930705 156930726 -40264706 + GC_rich Low_complexity Low_complexity 1 21 0 7 1782 27 29 0 0 chr1 156930755 156930789 -40264643 + GC_rich Low_complexity Low_complexity 1 34 0 7 1782 523 283 196 31 chr1 156931996 156932317 -40263115 + MLT1A LTR MaLR 1 374 0 7 1782 228 276 190 20 chr1 156932408 156932562 -40262870 - MIRc SINE MIR -65 203 23 7 1782 262 183 137 27 chr1 156934715 156934788 -40260644 - PB1D10 SINE Alu -36 81 1 7 1782 313 145 144 0 chr1 156934716 156934800 -40260632 - ID_B1 SINE B4 -120 172 74 7 1782 266 321 68 34 chr1 156935091 156935259 -40260173 + L2c LINE L2 3007 3185 -190 7 1782 797 203 224 21 chr1 156935348 156935589 -40259843 - RMER21B LTR ERV1 -277 565 276 7 1782 219 167 0 0 chr1 156937235 156937277 -40258155 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1782 201 176 0 0 chr1 156937334 156937368 -40258064 + T-rich Low_complexity Low_complexity 1 34 0 7 1782 871 168 0 20 chr1 156937368 156937520 -40257912 - B1_Mur4 SINE Alu 0 150 2 7 1782 323 277 19 19 chr1 156937904 156938007 -40257425 - U6 snRNA snRNA -1 106 4 7 1782 202 75 75 0 chr1 156938234 156938274 -40257158 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 7 1782 939 138 0 0 chr1 156938333 156938471 -40256961 - B1_Mus1 SINE Alu 0 148 11 7 1782 239 227 114 30 chr1 156938373 156938505 -40256927 - ORR1B1-int LTR MaLR -755 754 612 7 1782 271 252 20 10 chr1 156939543 156939643 -40255789 + G-rich Low_complexity Low_complexity 4 104 0 7 1782 22 0 0 0 chr1 156941524 156941546 -40253886 + AT_rich Low_complexity Low_complexity 1 22 0 7 1782 303 28 0 0 chr1 156941975 156942011 -40253421 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 7 1782 626 193 34 42 chr1 156942014 156942133 -40253299 - B1_Mur2 SINE Alu -11 138 21 7 1782 243 260 117 63 chr1 156942824 156942935 -40252497 - PB1 SINE Alu -4 123 7 7 1782 344 267 65 97 chr1 156942945 156943161 -40252271 - MIR SINE MIR -50 212 4 7 1782 21 0 0 0 chr1 156944316 156944337 -40251095 + AT_rich Low_complexity Low_complexity 1 21 0 7 1782 23 0 0 0 chr1 156948164 156948187 -40247245 + AT_rich Low_complexity Low_complexity 1 23 0 7 1782 375 121 0 0 chr1 156948577 156948635 -40246797 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 7 1782 662 167 40 68 chr1 156948635 156948783 -40246649 - B1_Mur3 SINE Alu -1 148 5 7 1782 447 330 29 66 chr1 156948979 156949222 -40246210 + MIR SINE MIR 26 259 -3 7 1782 1059 103 0 0 chr1 156949637 156949792 -40245640 + (TAGA)n Simple_repeat Simple_repeat 2 156 0 7 1782 229 304 12 25 chr1 156949806 156949887 -40245545 + RSINE1 SINE B4 1 80 -85 7 1782 402 237 48 48 chr1 156949906 156950030 -40245402 + B4A SINE B4 119 242 -50 7 1782 901 264 95 10 chr1 156950030 156950325 -40245107 + Lx8 LINE L1 7154 7473 0 7 1782 243 0 0 0 chr1 156950401 156950428 -40245004 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1782 240 264 0 0 chr1 156950948 156951001 -40244431 - MIR SINE MIR -69 139 87 7 1782 224 333 9 27 chr1 156950993 156951104 -40244328 + MIR3 SINE MIR 5 113 -95 7 1782 361 237 31 10 chr1 156951442 156951540 -40243892 + Charlie5 DNA MER1_type 35 134 -2490 7 1782 324 282 15 88 chr1 156951557 156951659 -40243773 + Charlie5 DNA MER1_type 2364 2465 -159 7 1782 466 239 0 26 chr1 156951659 156951775 -40243657 + PB1D10 SINE Alu 5 117 0 7 1782 324 282 15 88 chr1 156951775 156951808 -40243624 + Charlie5 DNA MER1_type 2466 2488 -136 7 1782 21 0 0 0 chr1 156951885 156951906 -40243526 + AT_rich Low_complexity Low_complexity 1 21 0 7 1782 730 119 53 53 chr1 156952236 156952369 -40243063 + B1_Mur4 SINE Alu 9 141 -9 7 1782 919 129 249 17 chr1 156952607 156952780 -40242652 + B3 SINE B2 1 213 -3 7 1782 264 306 69 23 chr1 156952794 156952881 -40242551 + ID_B1 SINE B4 134 224 0 7 1782 1593 132 4 0 chr1 156953229 156953463 -40241969 + RMER4B LTR ERVK 17 251 -334 7 1782 552 179 0 0 chr1 156953478 156953590 -40241842 + CT-rich Low_complexity Low_complexity 3 114 0 7 1782 494 229 48 6 chr1 156953612 156953786 -40241646 + RMER4B LTR ERVK 370 585 0 7 1782 392 346 38 6 chr1 156953810 156953967 -40241465 + MER5B DNA MER1_type 12 173 -5 7 1782 571 221 0 9 chr1 156954095 156954200 -40241232 + B1F SINE Alu 45 148 -1 7 1782 999 268 20 55 chr1 156954209 156954505 -40240927 + B4A SINE B4 9 292 0 7 1782 329 247 39 0 chr1 156954539 156954616 -40240816 + ID4_ SINE ID 2 81 -2 7 1782 189 0 0 0 chr1 156954996 156955017 -40240415 + (CTG)n Simple_repeat Simple_repeat 2 22 0 7 1782 420 37 0 0 chr1 156955441 156955495 -40239937 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1782 438 20 0 0 chr1 156955495 156955545 -40239887 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1782 651 258 45 79 chr1 156956036 156956238 -40239194 - B3A SINE B2 -3 195 1 7 1782 405 0 0 0 chr1 156956340 156956385 -40239047 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1782 873 0 0 0 chr1 156956464 156956561 -40238871 + (TC)n Simple_repeat Simple_repeat 1 97 0 7 1782 411 73 0 0 chr1 156957794 156957849 -40237583 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 7 1782 631 221 20 41 chr1 156958213 156958359 -40237073 - B1_Mur1 SINE Alu 0 149 7 7 1782 187 54 54 0 chr1 156959229 156959266 -40236166 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1782 771 276 74 15 chr1 156959510 156959779 -40235653 + B4A SINE B4 2 286 -6 7 1782 293 376 6 6 chr1 156959828 156960042 -40235390 + (CA)n Simple_repeat Simple_repeat 1 214 0 7 1782 203 179 0 35 chr1 156960047 156960105 -40235327 + (CATA)n Simple_repeat Simple_repeat 4 59 0 7 1782 315 244 21 46 chr1 156960108 156960306 -40235126 + (CATG)n Simple_repeat Simple_repeat 1 192 0 7 1782 252 279 25 0 chr1 156960326 156960405 -40235027 + (CATA)n Simple_repeat Simple_repeat 1 81 0 7 1782 398 325 79 76 chr1 156960636 156960926 -40234506 + ORR1E LTR MaLR 67 357 -2 7 1782 1061 259 68 41 chr1 156960957 156961323 -40234109 - MTEa LTR MaLR -3 376 1 7 1782 305 330 22 11 chr1 156961585 156961677 -40233755 + B4 SINE B4 64 156 -136 7 1782 476 176 0 0 chr1 156961609 156961683 -40233749 + B1_Mur3 SINE Alu 5 78 -71 7 1782 421 103 14 14 chr1 156961827 156961896 -40233536 + B1_Mus2 SINE Alu 79 147 0 7 1782 740 309 26 41 chr1 156961950 156962220 -40233212 + B4A SINE B4 27 292 0 7 1782 227 183 97 7 chr1 156962462 156962616 -40232816 + (CACTG)n Simple_repeat Simple_repeat 1 168 0 7 1782 375 214 33 82 chr1 156963387 156963509 -40231923 + MT2B LTR ERVL 163 278 -323 7 1782 789 114 73 8 chr1 156963411 156963535 -40231897 + B1_Mur3 SINE Alu 18 149 0 7 1782 513 0 0 0 chr1 156963545 156963602 -40231830 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1782 390 194 0 0 chr1 156963881 156963943 -40231489 - ID_B1 SINE B4 -7 217 156 7 1782 316 265 116 79 chr1 156963950 156964114 -40231318 - L1MD LINE L1 -794 5565 5396 7 1782 280 305 20 40 chr1 156964144 156964243 -40231189 + MIR3 SINE MIR 89 185 -23 7 1782 24 0 0 0 chr1 156964473 156964497 -40230935 + AT_rich Low_complexity Low_complexity 1 24 0 7 1782 705 53 0 0 chr1 156964760 156964854 -40230578 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1782 540 211 0 84 chr1 156964855 156964974 -40230458 - B1_Mur1 SINE Alu -20 129 21 7 1782 22 0 0 0 chr1 156966133 156966155 -40229277 + AT_rich Low_complexity Low_complexity 1 22 0 7 1782 907 264 48 41 chr1 156966232 156966500 -40228932 - ORR1E LTR MaLR -35 324 55 7 1782 245 29 29 0 chr1 156966813 156966847 -40228585 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 7 1782 556 218 84 78 chr1 156966848 156967002 -40228430 - RSINE1 SINE B4 -10 155 1 7 1782 226 244 60 71 chr1 156967173 156967257 -40228175 + LTR44 LTR ERV1 437 519 0 7 1782 1089 90 7 0 chr1 156967386 156967530 -40227902 + B1_Mus1 SINE Alu 3 147 -1 7 1782 2388 180 60 64 chr1 156967676 156968122 -40227310 + RLTR24 LTR ERV1 3 450 -79 7 1782 5572 65 46 5 chr1 156968122 156968862 -40226570 + L1_Mus4 LINE L1 5867 6636 0 7 1782 2388 180 60 64 chr1 156968862 156968944 -40226488 + RLTR24 LTR ERV1 451 529 0 7 1782 299 111 6 19 chr1 156969005 156969063 -40226369 - B1_Mur2 SINE Alu -43 106 49 7 1782 233 342 0 0 chr1 156970188 156970261 -40225171 + ID4 SINE ID 5 77 -6 7 1782 216 326 12 0 chr1 156970344 156970430 -40225002 + CT-rich Low_complexity Low_complexity 3 89 0 7 1782 313 234 29 105 chr1 156970517 156970622 -40224810 + PB1D9 SINE Alu 19 115 -5 8 1782 389 222 86 0 chr1 156970542 156970623 -40224809 + ID_B1 SINE B4 133 220 -4 8 1782 1357 109 0 30 chr1 156970662 156970861 -40224571 - B2_Mm2 SINE B2 0 195 3 8 1782 318 254 0 0 chr1 156971156 156971215 -40224217 + RSINE1 SINE B4 9 67 -98 8 1782 1295 76 5 66 chr1 156971354 156971552 -40223880 + B2_Mm1t SINE B2 1 186 -7 8 1782 243 0 0 0 chr1 156971556 156971583 -40223849 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1782 191 289 0 0 chr1 156971744 156971789 -40223643 - L2a LINE L2 -4 3422 3378 8 1782 1666 26 0 15 chr1 156972014 156972209 -40223223 - B2_Mm1t SINE B2 0 193 2 8 1782 2211 156 89 3 chr1 156972313 156972693 -40222739 + MTC LTR MaLR 1 413 -8 8 1782 571 305 174 63 chr1 156973037 156973527 -40221905 + MLT1G3 LTR MaLR 20 563 -32 8 1782 966 225 4 98 chr1 156974431 156974677 -40220755 - ID_B1 SINE B4 -1 223 1 8 1782 357 266 68 42 chr1 156975057 156975079 -40220353 - BC1_Mm scRNA scRNA -31 121 102 8 1782 189 0 0 0 chr1 156975079 156975100 -40220332 + (TGG)n Simple_repeat Simple_repeat 3 23 0 8 1782 371 261 16 10 chr1 156975100 156975120 -40220312 - ID4 SINE ID -51 101 35 8 1782 375 224 0 0 chr1 156975120 156975187 -40220245 - tRNA-Ala-GCY_ tRNA tRNA -6 69 3 8 1782 186 43 0 0 chr1 156975304 156975327 -40220105 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1782 520 267 15 30 chr1 156975336 156975471 -40219961 - RSINE1 SINE B4 -29 136 4 8 1782 387 313 17 0 chr1 156975593 156975708 -40219724 - PB1D10 SINE Alu 0 117 1 8 1782 261 376 46 0 chr1 156976945 156977054 -40218378 + L2a LINE L2 3313 3426 0 8 1782 1955 124 20 58 chr1 156977244 156977586 -40217846 + ORR1A4 LTR MaLR 1 329 0 8 1782 772 179 0 116 chr1 156978001 156978165 -40217267 - B1_Mus1 SINE Alu -1 147 3 8 1782 657 0 0 0 chr1 156978166 156978239 -40217193 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 8 1782 818 152 91 0 chr1 156978243 156978375 -40217057 - B1_Mur4 SINE Alu -4 146 3 8 1782 371 326 15 8 chr1 156978380 156978510 -40216922 + Charlie1a DNA MER1_type 1325 1455 0 8 1782 1392 85 0 0 chr1 156978525 156978701 -40216731 + B2_Mm2 SINE B2 1 176 -19 8 1782 771 235 51 46 chr1 156978723 156978919 -40216513 + B3A SINE B2 1 197 -1 8 1782 849 237 18 63 chr1 156978932 156979153 -40216279 + B3 SINE B2 1 211 -5 8 1782 735 153 83 8 chr1 156979189 156979321 -40216111 + B1_Mur3 SINE Alu 1 142 -7 8 1782 252 0 0 0 chr1 156979322 156979350 -40216082 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 1782 728 195 8 30 chr1 156980071 156980203 -40215229 + B3 SINE B2 1 129 -87 8 1782 261 0 0 0 chr1 156980238 156980267 -40215165 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1782 291 188 12 4 chr1 156980574 156980638 -40214794 - PB1D7 SINE Alu -43 74 9 8 1782 500 266 152 67 chr1 156981271 156981601 -40213831 + ORR1E LTR MaLR 1 358 -1 8 1782 896 162 0 20 chr1 156982909 156983060 -40212372 - B1_Mur4 SINE Alu -1 149 2 8 1782 230 273 75 75 chr1 156983160 156983267 -40212165 + Tigger10 DNA Tigger 269 375 -1468 8 1782 194 356 23 78 chr1 156986417 156986545 -40208887 - L2a LINE L2 -20 3367 3247 8 1782 954 107 57 0 chr1 156986565 156986705 -40208727 + B1_Mus1 SINE Alu 1 148 0 8 1782 347 38 0 37 chr1 156986706 156986760 -40208672 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 8 1782 646 226 180 6 chr1 156987007 156987185 -40208247 - ID_B1 SINE B4 -13 211 3 8 1782 315 224 115 23 chr1 156987186 156987273 -40208159 - MIR SINE MIR -82 180 86 8 1782 527 325 74 69 chr1 156987818 156988182 -40207250 - ORR1E LTR MaLR 0 370 5 8 1782 309 284 116 0 chr1 156988163 156988258 -40207174 - ORR1E-int LTR MaLR -30 1550 1445 8 1782 21 0 0 0 chr1 156988258 156988279 -40207153 + AT_rich Low_complexity Low_complexity 1 21 0 8 1782 1219 59 0 0 chr1 156988337 156988489 -40206943 - B2_Mm2 SINE B2 -43 152 1 8 1782 1174 294 209 6 chr1 156988547 156989031 -40206401 - ORR1E-int LTR MaLR -979 601 20 8 1782 688 321 41 76 chr1 156989034 156989402 -40206030 - ORR1E LTR MaLR -4 355 1 8 1782 321 267 34 34 chr1 156989611 156989700 -40205732 + B4A SINE B4 81 169 -123 8 1782 626 191 27 0 chr1 156989625 156989735 -40205697 + PB1D9 SINE Alu 7 119 -1 8 1782 354 293 185 13 chr1 156989768 156990000 -40205432 - L2a LINE L2 -192 3234 2963 8 1782 623 125 0 1 chr1 156990106 156990210 -40205222 - B1_Mur3 SINE Alu 0 149 47 8 1782 1390 82 5 5 chr1 156990474 156990659 -40204773 + B2_Mm2 SINE B2 2 186 -9 8 1782 400 148 0 33 chr1 156990830 156990921 -40204511 + CT-rich Low_complexity Low_complexity 2 89 0 8 1782 943 144 14 0 chr1 156990951 156991097 -40204335 - B1_Mus1 SINE Alu 0 148 1 8 1782 342 388 75 62 chr1 156991965 156992366 -40203066 - LTR33 LTR ERVL -109 406 1 8 1782 907 75 8 8 chr1 156992552 156992686 -40202746 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 8 1782 251 295 154 0 chr1 156992709 156992787 -40202645 - PB1 SINE Alu -33 94 5 8 1782 834 153 211 6 chr1 156993112 156993283 -40202149 - B3 SINE B2 -10 206 1 8 1782 721 259 30 15 chr1 156994806 156995006 -40200426 + MLT1D LTR MaLR 30 232 -273 8 1782 193 118 39 0 chr1 156995132 156995183 -40200249 + T-rich Low_complexity Low_complexity 2 54 0 8 1782 1255 34 0 7 chr1 156995745 156995893 -40199539 - B1_Mm SINE Alu 0 147 1 8 1782 578 141 0 0 chr1 156996030 156996129 -40199303 - Lx9 LINE L1 -7 7637 7539 8 1782 276 30 0 0 chr1 156996129 156996162 -40199270 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 8 1782 1165 62 7 0 chr1 156996166 156996311 -40199121 - B1_Mm SINE Alu 0 147 2 8 1782 345 47 0 0 chr1 156996342 156996385 -40199047 + (TA)n Simple_repeat Simple_repeat 1 43 0 8 1782 960 184 74 0 chr1 156996401 156996591 -40198841 - Lx9 LINE L1 -201 7443 7240 8 1782 663 171 15 8 chr1 156996598 156996728 -40198704 + ORR1C2 LTR MaLR 2 132 -252 8 1782 803 133 39 15 chr1 156996723 156996853 -40198579 + ORR1C2 LTR MaLR 242 374 -10 8 1782 1386 233 8 0 chr1 156996861 156997127 -40198305 - Lx9 LINE L1 -409 7235 6968 8 1782 2247 138 11 30 chr1 156997214 156997586 -40197846 + ORR1B2 LTR MaLR 3 367 0 8 1782 292 222 45 127 chr1 156997788 156997922 -40197510 - RSINE1 SINE B4 0 165 43 8 1782 537 311 65 37 chr1 156997926 156998220 -40197212 + RLTR15 LTR ERVK 7 308 -51 8 1782 1188 55 0 0 chr1 156998481 156998627 -40196805 - B1_Mus2 SINE Alu 0 147 2 8 1782 830 237 5 42 chr1 156998833 156999049 -40196383 + B3 SINE B2 3 210 -6 8 1782 1772 251 159 19 chr1 156999115 156999811 -40195621 + L1MB3 LINE L1 5272 6072 -111 8 1782 474 308 83 14 chr1 156999853 156999998 -40195434 + B4 SINE B4 29 183 -109 8 1782 467 294 20 0 chr1 157000000 157000102 -40195330 + B4 SINE B4 186 289 -3 1 1782 800 136 24 0 chr1 157000784 157000909 -40194523 - B1_Mus1 SINE Alu 0 148 21 2 1782 310 277 107 0 chr1 157000817 157000929 -40194503 - B4 SINE B4 -88 204 81 3 1782 352 260 19 19 chr1 157001347 157001453 -40193979 - L1ME2 LINE L1 -34 6130 6025 4 1782 180 192 36 71 chr1 157001981 157002037 -40193395 - L2a LINE L2 -101 3325 3272 5 1782 21 36 0 0 chr1 157002081 157002109 -40193323 + AT_rich Low_complexity Low_complexity 1 28 0 6 1782 1676 169 54 114 chr1 157002504 157002891 -40192541 - ORR1D1 LTR MaLR 0 374 11 7 1782 738 238 6 53 chr1 157003216 157003385 -40192047 - RSINE1 SINE B4 0 165 5 8 1782 783 260 6 17 chr1 157003484 157003664 -40191768 - B3A SINE B2 -16 182 5 9 1782 216 317 134 24 chr1 157004263 157004399 -40191033 + L2c LINE L2 3183 3362 -25 1 1782 255 273 0 147 chr1 157004841 157004957 -40190475 - MT2B LTR ERVL -328 273 175 1 1782 638 191 0 0 chr1 157004853 157004963 -40190469 - B1_Mur4 SINE Alu -35 115 6 1 1782 278 242 65 0 chr1 157005045 157005107 -40190325 + MIRc SINE MIR 91 156 -112 1 1782 567 140 75 0 chr1 157007045 157007138 -40188294 - PB1D9 SINE Alu 0 120 21 1 1782 241 290 29 0 chr1 157007095 157007164 -40188268 - B4A SINE B4 -144 148 78 1 1782 772 231 39 0 chr1 157007373 157007529 -40187903 - RSINE1 SINE B4 -2 163 2 1 1782 432 244 0 0 chr1 157007835 157007921 -40187511 + RSINE1 SINE B4 3 88 -77 1 1782 501 17 0 0 chr1 157007924 157007982 -40187450 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1782 351 0 0 0 chr1 157007982 157008020 -40187412 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1782 195 139 0 0 chr1 157008354 157008390 -40187042 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1782 1243 34 7 0 chr1 157008397 157008544 -40186888 - B1_Mus1 SINE Alu 0 148 1 2 1782 849 142 35 7 chr1 157008587 157008729 -40186703 + B1_Mur4 SINE Alu 4 149 -1 2 1782 269 313 60 10 chr1 157008853 157008953 -40186479 - PB1D10 SINE Alu 0 117 13 2 1782 449 289 55 0 chr1 157009058 157009186 -40186246 - B1F1 SINE Alu 0 149 15 2 1782 520 303 14 21 chr1 157009338 157009474 -40185958 + ID_B1 SINE B4 80 215 -9 2 1782 882 129 0 0 chr1 157009474 157009614 -40185818 + (GAA)n Simple_repeat Simple_repeat 2 141 0 2 1782 429 264 134 65 chr1 157009979 157010191 -40185241 - ORR1E LTR MaLR 0 359 131 2 1782 237 108 0 0 chr1 157010191 157010228 -40185204 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 2 1782 429 282 175 38 chr1 157010228 157010278 -40185154 - ORR1E LTR MaLR -229 130 60 2 1782 227 229 37 119 chr1 157012406 157012515 -40182917 - MLT1K LTR MaLR -170 425 326 2 1782 661 219 0 30 chr1 157012446 157012578 -40182854 - B1F SINE Alu -8 141 14 3 1782 184 54 53 26 chr1 157012600 157012638 -40182794 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1782 834 230 118 0 chr1 157012695 157012882 -40182550 - B3 SINE B2 -5 211 3 3 1782 909 149 67 28 chr1 157012954 157013133 -40182299 - B2_Mm2 SINE B2 -9 186 1 3 1782 372 181 0 0 chr1 157014017 157014100 -40181332 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1782 1141 66 0 0 chr1 157014312 157014449 -40180983 - B1_Mus2 SINE Alu -9 138 2 3 1782 642 13 0 0 chr1 157014538 157014613 -40180819 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1782 326 343 106 44 chr1 157015047 157015227 -40180205 + MLT1G3 LTR MaLR 99 289 -306 3 1782 342 347 87 0 chr1 157015292 157015442 -40179990 + MLT1G3 LTR MaLR 417 579 -16 3 1782 252 302 224 39 chr1 157015565 157015851 -40179581 - MLT1A1 LTR MaLR -6 402 64 3 1782 476 248 57 0 chr1 157015984 157016089 -40179343 - PB1D9 SINE Alu 0 120 10 3 1782 207 0 0 0 chr1 157017115 157017138 -40178294 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 4 1782 299 317 55 46 chr1 157017430 157017539 -40177893 + B1F SINE Alu 2 111 -38 4 1782 675 215 23 0 chr1 157017543 157017673 -40177759 + B1_Mus2 SINE Alu 2 134 -13 4 1782 204 40 0 0 chr1 157017676 157017701 -40177731 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1782 270 21 0 60 chr1 157017935 157017985 -40177447 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1782 473 221 171 61 chr1 157018321 157018485 -40176947 - B3A SINE B2 -16 182 1 4 1782 353 242 138 83 chr1 157018499 157018799 -40176633 + Charlie1a DNA MER1_type 9 177 -1278 4 1782 862 178 0 20 chr1 157018811 157018960 -40176472 - B1_Mur3 SINE Alu -1 148 3 4 1782 540 308 99 8 chr1 157019082 157019112 -40176320 + B4 SINE B4 3 33 -259 4 1782 675 0 0 0 chr1 157019112 157019187 -40176245 + (CTGTG)n Simple_repeat Simple_repeat 4 78 0 4 1782 540 308 99 8 chr1 157019187 157019418 -40176014 + B4 SINE B4 34 287 -5 4 1782 341 219 41 117 chr1 157020195 157020366 -40175066 - HAL1-2a_MD LINE L1 -522 2502 2345 5 1782 359 219 53 86 chr1 157020700 157020924 -40174508 - HAL1-2a_MD LINE L1 -517 2507 2327 5 1782 1135 277 241 14 chr1 157021577 157021877 -40173555 - MER21B LTR ERV1 -29 834 458 5 1782 1975 131 44 145 chr1 157021877 157022333 -40173099 - RMER17C LTR ERVK 0 410 1 5 1782 1135 277 241 14 chr1 157022333 157022588 -40172844 - MER21B LTR ERV1 -406 457 154 5 1782 319 245 206 39 chr1 157022605 157022707 -40172725 - MER21B LTR ERV1 -744 119 1 5 1782 260 273 132 29 chr1 157022717 157022853 -40172579 + MIR SINE MIR 86 235 -27 5 1782 216 214 23 35 chr1 157023726 157023813 -40171619 + GA-rich Low_complexity Low_complexity 3 88 0 5 1782 339 250 96 59 chr1 157023824 157023960 -40171472 + B1F SINE Alu 3 143 -6 5 1782 432 0 0 0 chr1 157024163 157024211 -40171221 + (TAA)n Simple_repeat Simple_repeat 2 49 0 5 222 291 175 0 0 chr1 157024248 157024305 -40171127 + (TAA)n Simple_repeat Simple_repeat 2 58 0 5 1783 355 264 77 0 chr1 157024476 157024567 -40170865 + B1F SINE Alu 20 117 -32 5 1783 272 227 118 2 chr1 157024723 157024805 -40170627 - PB1D10 SINE Alu -51 96 6 5 1783 462 245 0 0 chr1 157026145 157026243 -40169189 - PB1D7 SINE Alu -22 98 1 6 1783 232 298 20 50 chr1 157026163 157026262 -40169170 - B4A SINE B4 -127 165 70 6 1783 855 166 27 7 chr1 157026407 157026553 -40168879 - B1_Mur4 SINE Alu -1 149 1 6 1783 282 164 0 0 chr1 157027459 157027514 -40167918 + GA-rich Low_complexity Low_complexity 3 57 0 6 1783 1316 304 24 39 chr1 157028732 157029242 -40166190 - Lx9 LINE L1 -243 7401 6900 6 1783 925 109 29 14 chr1 157029273 157029412 -40166020 - B1_Mur2 SINE Alu 0 149 9 6 1783 322 222 16 0 chr1 157029789 157029852 -40165580 - ID4_ SINE ID -11 72 9 6 1783 219 36 0 0 chr1 157030684 157030712 -40164720 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1783 2663 81 105 3 chr1 157030781 157031153 -40164279 + L1Md_F2 LINE L1 6161 6570 -12 6 1783 981 235 20 0 chr1 157031432 157031636 -40163796 + B3 SINE B2 1 208 -8 6 1783 401 246 28 180 chr1 157031768 157031946 -40163486 + ID_B1 SINE B4 25 175 -49 7 1783 479 182 30 12 chr1 157031859 157031976 -40163456 + PB1D10 SINE Alu 7 120 -27 7 1783 556 240 206 63 chr1 157032007 157032075 -40163357 - Charlie5 DNA MER1_type -5 2619 2570 7 1783 1227 41 7 0 chr1 157032075 157032221 -40163211 - B1_Mus2 SINE Alu 0 147 1 7 1783 556 240 206 63 chr1 157032221 157032468 -40162964 - Charlie5 DNA MER1_type -55 2569 2259 7 1783 612 0 0 0 chr1 157033318 157033386 -40162046 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1783 689 222 28 0 chr1 157033975 157034119 -40161313 + B1_Mur3 SINE Alu 2 149 0 7 1783 351 192 18 92 chr1 157035139 157035248 -40160184 - MTEb LTR MaLR -4 375 275 7 1783 2776 149 44 13 chr1 157035478 157035592 -40159840 - RMER1B Other Other -9 1057 937 7 1783 189 0 0 0 chr1 157035592 157035613 -40159819 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1783 2776 145 130 11 chr1 157035613 157036019 -40159413 - RMER1B Other Other -130 936 486 7 1783 807 230 143 32 chr1 157036015 157036231 -40159201 - RMER1B Other Other -826 240 1 7 1783 984 145 30 65 chr1 157036267 157036466 -40158966 + B2_Mm2 SINE B2 2 193 -2 8 1783 1490 288 34 16 chr1 157036509 157037007 -40158425 - Lx7 LINE L1 -395 7301 6795 8 1783 822 142 28 14 chr1 157037460 157037603 -40157829 - B1_Mur2 SINE Alu -1 148 4 8 1783 552 219 68 68 chr1 157037626 157037773 -40157659 - B1F SINE Alu -2 147 1 8 1783 658 226 47 36 chr1 157037798 157037991 -40157441 + B3A SINE B2 4 198 0 8 1783 195 42 0 0 chr1 157038159 157038183 -40157249 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1783 1236 55 0 0 chr1 157039197 157039343 -40156089 + B1_Mus2 SINE Alu 2 147 0 8 1783 597 194 0 9 chr1 157039477 157039586 -40155846 - PB1D10 SINE Alu -4 113 6 8 1783 1356 114 0 5 chr1 157040922 157041116 -40154316 + B2_Mm2 SINE B2 2 194 -1 8 1783 231 279 66 2 chr1 157041306 157041397 -40154035 - L2b LINE L2 -25 3401 3274 8 1783 382 361 116 16 chr1 157041956 157042198 -40153234 + HAL1 LINE L1 6 271 -2236 9 1783 361 301 191 65 chr1 157042194 157042549 -40152883 + HAL1 LINE L1 2108 2507 0 9 1783 534 251 122 3 chr1 157042568 157042786 -40152646 + MER33 DNA MER1_type 2 235 -89 9 1783 494 174 268 13 chr1 157042791 157042948 -40152484 + ID_B1 SINE B4 19 215 -9 9 1783 295 200 13 79 chr1 157042881 157042957 -40152475 + PB1D9 SINE Alu 46 116 -4 9 1783 531 78 0 0 chr1 157043658 157043735 -40151697 + (GA)n Simple_repeat Simple_repeat 1 77 0 9 1783 438 304 36 72 chr1 157044167 157044362 -40151070 + MER46C DNA MER2_type 151 338 0 9 1783 486 188 0 0 chr1 157044852 157044953 -40150479 + (TG)n Simple_repeat Simple_repeat 1 101 0 9 1783 210 211 17 34 chr1 157045946 157046005 -40149427 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1783 554 221 39 0 chr1 157046085 157046189 -40149243 - RSINE1 SINE B4 -56 109 2 9 1783 614 281 51 91 chr1 157046199 157046213 -40149219 - B4A SINE B4 -48 244 231 9 1783 778 164 220 12 chr1 157046213 157046386 -40149046 - B3 SINE B2 -5 211 3 1 1783 614 281 51 91 chr1 157046386 157046625 -40148807 - B4A SINE B4 -62 230 1 9 1783 733 289 96 15 chr1 157047711 157047971 -40147461 - B4A SINE B4 -6 286 6 1 1783 301 309 12 0 chr1 157048057 157048138 -40147294 - B1F SINE Alu -67 82 1 1 1783 464 252 24 32 chr1 157052634 157052757 -40142675 + RSINE1 SINE B4 34 155 -10 1 1783 264 59 0 0 chr1 157053234 157053268 -40142164 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1783 318 260 256 29 chr1 157054812 157055050 -40140382 + B4A SINE B4 1 292 0 1 1783 278 265 179 15 chr1 157055098 157055232 -40140200 + Lx7 LINE L1 7176 7331 -365 1 1783 443 289 103 7 chr1 157055452 157055588 -40139844 + ID_B1 SINE B4 4 152 -72 1 1783 276 131 0 21 chr1 157055585 157055632 -40139800 - B1F SINE Alu -87 62 17 1 1783 625 254 63 5 chr1 157055671 157055861 -40139571 + B3 SINE B2 2 202 -14 1 1783 389 221 20 50 chr1 157055892 157055992 -40139440 + PB1D10 SINE Alu 21 117 0 1 1783 342 260 25 25 chr1 157056013 157056092 -40139340 + RSINE1 SINE B4 11 89 -76 1 1783 258 271 68 41 chr1 157056182 157056255 -40139177 + ID4_ SINE ID 3 77 -6 1 1783 271 196 0 0 chr1 157056376 157056427 -40139005 - B4 SINE B4 -47 245 195 1 1783 236 313 120 10 chr1 157056458 157056558 -40138874 - B4A SINE B4 -173 119 9 1 1783 308 164 106 84 chr1 157056682 157056778 -40138654 + B1F SINE Alu 6 109 -40 1 1783 327 105 0 0 chr1 157058147 157058204 -40137228 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1783 968 144 197 0 chr1 157058690 157058878 -40136554 - URR1B DNA MER1_type 0 225 1 1 1783 3361 34 0 0 chr1 157065622 157066010 -40129422 + L1Md_A LINE L1 6195 6582 0 1 1783 225 225 113 0 chr1 157066155 157066226 -40129206 + PB1D10 SINE Alu 30 108 -9 1 1783 1196 130 23 33 chr1 157067038 157067253 -40128179 + URR1A DNA MER1_type 1 213 -13 1 1783 1000 193 54 30 chr1 157067896 157068099 -40127333 + B3 SINE B2 1 208 -8 1 1783 243 146 0 0 chr1 157068108 157068149 -40127283 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 1 1783 198 343 15 0 chr1 157069291 157069358 -40126074 - L2 LINE L2 -553 2866 2799 1 1783 417 233 21 68 chr1 157069922 157070075 -40125357 + B4A SINE B4 1 152 -72 1 1783 482 46 15 0 chr1 157070195 157070260 -40125172 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1783 630 169 0 0 chr1 157073937 157074055 -40121377 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1783 599 326 96 105 chr1 157074082 157074220 -40121212 + MER2 DNA MER2_type 1 135 -210 1 1783 1577 113 14 0 chr1 157074220 157074442 -40120990 - URR1A DNA MER1_type 0 226 2 1 1783 599 326 96 105 chr1 157074442 157074646 -40120786 + MER2 DNA MER2_type 136 340 -5 1 1783 1083 246 108 74 chr1 157075470 157075848 -40119584 + MLT2D LTR ERVL 20 410 -4 1 1783 453 266 36 9 chr1 157076285 157076395 -40119037 + PB1D7 SINE Alu 1 113 -7 1 1783 706 228 7 33 chr1 157076406 157076556 -40118876 + B1_Mur1 SINE Alu 4 149 0 1 1783 192 269 38 13 chr1 157078568 157078647 -40116785 - MIRb SINE MIR -157 111 31 1 1783 277 371 84 38 chr1 157079006 157079269 -40116163 + L2c LINE L2 3074 3348 -39 1 1783 840 128 0 0 chr1 157079347 157079480 -40115952 + (CA)n Simple_repeat Simple_repeat 1 133 0 1 1783 198 0 0 0 chr1 157081756 157081778 -40113654 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1783 648 0 0 0 chr1 157082014 157082086 -40113346 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1783 369 0 0 0 chr1 157082086 157082126 -40113306 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1783 300 53 0 0 chr1 157082910 157082948 -40112484 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1783 279 0 0 0 chr1 157086085 157086116 -40109316 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1783 231 253 67 33 chr1 157086174 157086264 -40109168 - PB1D10 SINE Alu -1 116 24 1 1783 678 269 35 42 chr1 157086856 157087099 -40108333 + MLT1A0 LTR MaLR 107 344 -21 1 1783 22 0 0 0 chr1 157090085 157090107 -40105325 + AT_rich Low_complexity Low_complexity 1 22 0 1 1783 42 20 0 0 chr1 157090122 157090171 -40105261 + AT_rich Low_complexity Low_complexity 1 49 0 1 1783 219 278 121 50 chr1 157090171 157090311 -40105121 - MIRc SINE MIR -107 161 12 1 1783 1027 118 23 17 chr1 157090787 157090960 -40104472 + URR1A DNA MER1_type 53 226 0 1 1783 403 264 57 0 chr1 157092581 157092687 -40102745 + PB1 SINE Alu 14 125 -2 1 1783 257 219 15 30 chr1 157092698 157092764 -40102668 + ID4_ SINE ID 2 66 -17 1 1783 759 200 78 67 chr1 157093266 157093350 -40102082 + B3A SINE B2 1 81 -117 1 1783 1320 67 0 0 chr1 157093350 157093530 -40101902 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1783 759 200 78 67 chr1 157093530 157093638 -40101794 + B3A SINE B2 82 195 -3 1 1783 607 207 28 49 chr1 157093666 157093808 -40101624 + B1_Mur1 SINE Alu 9 147 -2 1 1783 445 237 31 78 chr1 157093830 157093958 -40101474 + ID_B1 SINE B4 8 129 -95 1 1783 622 196 0 0 chr1 157093965 157094077 -40101355 + PB1D9 SINE Alu 9 120 0 1 1783 319 44 0 0 chr1 157094193 157094238 -40101194 + B3 SINE B2 1 45 -171 1 1783 182 304 186 14 chr1 157094384 157094524 -40100908 - MIRb SINE MIR -50 218 55 1 1783 526 289 14 21 chr1 157094859 157095004 -40100428 + B1F1 SINE Alu 5 148 -1 1 1783 188 311 30 76 chr1 157095074 157095206 -40100226 - L2c LINE L2 0 3387 3262 1 1783 951 131 0 7 chr1 157095559 157095697 -40099735 + B1_Mur4 SINE Alu 1 137 -13 1 1783 405 0 0 0 chr1 157095697 157095742 -40099690 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1783 1212 56 0 0 chr1 157095742 157095886 -40099546 - B1_Mus1 SINE Alu 0 148 5 1 1783 1000 139 0 16 chr1 157095934 157096117 -40099315 + GA-rich Low_complexity Low_complexity 1 180 0 1 1783 2239 208 75 66 chr1 157096528 157097090 -40098342 - RMER2 LTR ERV1 0 567 1 1 1783 509 344 59 25 chr1 157097299 157097585 -40097847 + MLT1A0 LTR MaLR 34 329 -36 1 1783 1037 139 202 28 chr1 157098023 157098275 -40097157 + RLTR9F LTR ERVK 1 296 -119 1 1783 258 32 0 0 chr1 157098277 157098308 -40097124 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1783 597 28 0 0 chr1 157098308 157098378 -40097054 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 1 1783 1448 22 0 17 chr1 157098378 157098559 -40096873 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 1 1783 691 42 21 0 chr1 157098559 157098654 -40096778 + (GGAAA)n Simple_repeat Simple_repeat 4 100 0 1 1783 2209 152 78 99 chr1 157099159 157099191 -40096241 + RMER4A LTR ERVK 1 32 -434 1 1783 282 29 0 0 chr1 157099191 157099226 -40096206 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1783 2209 152 78 99 chr1 157099226 157099669 -40095763 + RMER4A LTR ERVK 33 466 0 1 1783 761 138 96 7 chr1 157099671 157099817 -40095615 + RMER4A LTR ERVK 308 466 0 1 1783 204 143 0 23 chr1 157100750 157100793 -40094639 + T-rich Low_complexity Low_complexity 2 43 0 1 1783 279 160 26 13 chr1 157100814 157100890 -40094542 + C-rich Low_complexity Low_complexity 2 78 0 1 1783 480 284 0 17 chr1 157101116 157101234 -40094198 + PB1D10 SINE Alu 1 116 -1 1 1783 414 0 0 0 chr1 157101240 157101286 -40094146 + (TAA)n Simple_repeat Simple_repeat 1 46 0 1 1783 372 302 0 0 chr1 157101533 157101629 -40093803 + B4A SINE B4 5 100 -192 1 1783 1278 40 0 0 chr1 157101749 157101897 -40093535 + B1_Mus1 SINE Alu 1 148 0 1 1783 213 132 0 0 chr1 157101897 157101935 -40093497 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1783 420 20 0 0 chr1 157102219 157102268 -40093164 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1783 1155 88 0 7 chr1 157102363 157102512 -40092920 + B1_Mus1 SINE Alu 1 148 0 1 1783 273 268 196 0 chr1 157102766 157102863 -40092569 - ID_B1 SINE B4 0 224 109 1 1783 799 236 24 38 chr1 157103515 157103726 -40091706 - ID_B1 SINE B4 -6 218 11 1 1783 2772 37 3 0 chr1 157103949 157104298 -40091134 - MTB LTR MaLR -50 350 1 1 1783 410 67 67 0 chr1 157104480 157104540 -40090892 - MTB_Mm LTR MaLR 0 407 344 1 1783 262 232 35 18 chr1 157104540 157104597 -40090835 - PB1 SINE Alu -69 58 1 1 1783 225 183 29 118 chr1 157104597 157104608 -40090824 - ID_B1 SINE B4 -86 138 77 1 1783 969 122 45 3 chr1 157104841 157105014 -40090418 + B2_Mm2 SINE B2 23 210 -6 1 1783 291 366 54 37 chr1 157105036 157105277 -40090155 - RMER15 LTR ERVL -7 568 324 1 1783 293 271 0 0 chr1 157105499 157105569 -40089863 - RMER15-int LTR ERVL -49 4950 4881 1 1783 523 284 96 15 chr1 157105740 157105937 -40089495 - Lx8 LINE L1 -653 6820 6608 1 1783 2212 83 16 0 chr1 157105944 157106258 -40089174 + ORR1A2 LTR MaLR 1 319 -8 1 1783 506 320 27 22 chr1 157106263 157106448 -40088984 - RMER15-int LTR ERVL -461 4538 4353 1 1783 376 223 59 51 chr1 157106507 157106625 -40088807 - RMER15-int LTR ERVL -745 4254 4136 1 1783 1585 300 115 9 chr1 157106629 157107168 -40088264 - RMER15-int LTR ERVL -2440 2559 1964 1 1783 1385 271 51 6 chr1 157107235 157107591 -40087841 - RMER15-int LTR ERVL -3753 1246 875 1 1783 968 293 25 15 chr1 157107835 157108109 -40087323 - RMER15-int LTR ERVL -4457 542 266 1 1783 272 409 34 22 chr1 157108308 157108628 -40086804 - ERVL-int LTR ERVL -957 4800 4477 1 1783 369 294 101 58 chr1 157109391 157109451 -40085981 + B4 SINE B4 28 220 -69 1 1783 709 168 24 0 chr1 157109451 157109576 -40085856 + B1_Mur4 SINE Alu 1 128 -22 1 1783 329 188 14 0 chr1 157109579 157109648 -40085784 - L1M3 LINE L1 -2567 3576 3507 1 1783 1005 84 0 0 chr1 157109666 157109808 -40085624 - B1_Mus1 SINE Alu 0 148 7 1 1783 509 280 56 70 chr1 157109669 157109884 -40085548 - B4 SINE B4 -69 223 12 1 1783 327 132 128 26 chr1 157109814 157109892 -40085540 - PB1D10 SINE Alu -29 88 3 1 1783 492 286 44 32 chr1 157109896 157110131 -40085301 - L1M3 LINE L1 -2641 3499 3260 1 1783 551 228 309 0 chr1 157110131 157110293 -40085139 - B3 SINE B2 -1 215 4 1 1783 492 286 44 32 chr1 157110293 157110306 -40085126 - L1M3 LINE L1 -2881 3259 3248 1 1783 759 147 86 22 chr1 157110321 157110460 -40084972 - B1_Mur4 SINE Alu -1 149 2 1 1783 35921 70 15 4 chr1 157110526 157116808 -40078624 - L1Md_F2 LINE L1 -12 6570 212 1 1783 298 244 101 22 chr1 157116832 157116970 -40078462 - L1M3 LINE L1 -2880 3260 3112 1 1783 446 270 110 11 chr1 157117176 157117367 -40078065 - L1M3 LINE L1 -3125 3021 2812 1 1783 511 204 8 34 chr1 157117368 157117485 -40077947 - PB1D10 SINE Alu -3 114 1 1 1783 230 293 0 13 chr1 157117424 157117500 -40077932 - B4A SINE B4 -147 145 71 2 1783 684 256 53 45 chr1 157118055 157118300 -40077132 - L1M2 LINE L1 -3417 3428 3182 2 1783 25 0 0 0 chr1 157118438 157118463 -40076969 + AT_rich Low_complexity Low_complexity 1 25 0 2 1783 282 242 90 38 chr1 157118699 157118832 -40076600 - B1F SINE Alu -9 140 1 2 1783 414 257 110 12 chr1 157118832 157119005 -40076427 - L1M2 LINE L1 -4253 2596 2407 2 1783 868 86 43 14 chr1 157119250 157119391 -40076041 - B1_Mur4 SINE Alu 0 150 6 2 1783 938 92 110 13 chr1 157119425 157119580 -40075852 - B2_Mm2 SINE B2 -23 172 3 2 1783 1564 48 32 5 chr1 157121523 157121712 -40073720 + B2_Mm2 SINE B2 2 195 0 2 1783 1014 101 65 0 chr1 157121719 157121858 -40073574 + B1_Mus1 SINE Alu 1 148 0 2 1783 520 194 110 24 chr1 157122481 157122608 -40072824 - B1F SINE Alu -8 141 4 2 1783 414 0 0 0 chr1 157123221 157123267 -40072165 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1783 234 295 126 39 chr1 157128536 157128663 -40066769 - MIRb SINE MIR -110 158 21 2 1783 453 223 170 0 chr1 157129318 157129430 -40066002 - ID_B1 SINE B4 0 224 94 2 1783 1098 89 7 46 chr1 157129791 157129944 -40065488 - B1_Mus1 SINE Alu 0 148 2 2 1783 814 271 108 24 chr1 157130718 157130968 -40064464 + B4 SINE B4 12 282 -10 2 1783 238 324 104 35 chr1 157132017 157132132 -40063300 + MIR SINE MIR 2 124 -138 2 1783 364 304 87 13 chr1 157132271 157132421 -40063011 + RSINE1 SINE B4 5 165 0 2 1783 581 293 67 0 chr1 157132906 157133056 -40062376 + RSINE1 SINE B4 4 163 -2 2 1783 228 306 246 13 chr1 157133240 157133541 -40061891 - L1M5 LINE L1 -1136 5010 4640 2 1783 439 266 112 8 chr1 157133543 157133668 -40061764 + B1F SINE Alu 2 139 -10 2 1783 531 31 0 0 chr1 157133668 157133733 -40061699 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1783 570 277 108 54 chr1 157134181 157134235 -40061197 - L1M5 LINE L1 -2260 3886 3838 2 1783 1744 167 135 12 chr1 157134235 157134568 -40060864 + ORR1D1 LTR MaLR 1 374 0 2 1783 570 277 108 54 chr1 157134568 157134940 -40060492 - L1M5 LINE L1 -2309 3837 3437 2 1783 1631 53 5 0 chr1 157134944 157135133 -40060299 - B2_Mm1a SINE B2 -3 190 1 2 1783 180 0 0 0 chr1 157135172 157135192 -40060240 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1783 3755 162 93 28 chr1 157135254 157135988 -40059444 + RMER1A Other Other 276 1030 0 2 1783 314 23 0 23 chr1 157136111 157136155 -40059277 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1783 1265 15 0 0 chr1 157136155 157136292 -40059140 - B1_Mm SINE Alu -10 137 1 2 1783 241 274 117 31 chr1 157136618 157136746 -40058686 + ORR1D1 LTR MaLR 3 141 -233 2 1783 210 71 0 0 chr1 157136966 157136994 -40058438 + (GGA)n Simple_repeat Simple_repeat 1 28 0 2 1783 561 245 0 9 chr1 157136996 157137107 -40058325 - B1_Mur1 SINE Alu -14 135 26 2 1783 22 0 0 0 chr1 157137117 157137139 -40058293 + AT_rich Low_complexity Low_complexity 1 22 0 2 1783 216 122 0 0 chr1 157137833 157137874 -40057558 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1783 834 231 30 10 chr1 157138113 157138310 -40057122 - B3 SINE B2 -7 209 9 2 1783 626 124 20 38 chr1 157139070 157139207 -40056225 - B1_Mus1 SINE Alu 0 149 8 2 1783 1387 108 0 5 chr1 157139415 157139602 -40055830 + B2_Mm2 SINE B2 2 187 -8 2 1783 28 48 0 0 chr1 157139892 157139934 -40055498 + AT_rich Low_complexity Low_complexity 1 42 0 2 1783 528 56 0 0 chr1 157139939 157140011 -40055421 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1783 23 68 0 0 chr1 157141072 157141116 -40054316 + AT_rich Low_complexity Low_complexity 1 44 0 2 1783 629 270 99 0 chr1 157141895 157142106 -40053326 + MER63D DNA AcHobo 70 301 -760 2 1783 375 258 69 83 chr1 157142114 157142258 -40053174 + MT2B2 LTR ERVL 123 264 -320 2 1783 1046 16 0 0 chr1 157142165 157142287 -40053145 + B1_Mus1 SINE Alu 21 142 -6 2 1783 185 0 40 0 chr1 157142290 157142315 -40053117 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1783 591 15 0 0 chr1 157142518 157142586 -40052846 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 2 1783 2373 147 53 3 chr1 157142651 157143026 -40052406 + ORR1B1 LTR MaLR 1 394 0 2 1783 270 327 153 0 chr1 157144424 157144574 -40050858 + Tigger5 DNA MER2_type 60 232 -2174 2 1783 352 280 32 0 chr1 157144574 157144667 -40050765 + Tigger5 DNA MER2_type 2294 2389 -17 2 1783 249 241 35 0 chr1 157145147 157145205 -40050227 + tRNA-Ala-GCA tRNA tRNA 3 62 -13 2 1783 221 265 29 14 chr1 157145335 157145404 -40050028 + ID4_ SINE ID 5 74 -9 2 1783 992 182 28 0 chr1 157145342 157145518 -40049914 + B3 SINE B2 14 194 -22 2 1783 22 0 0 0 chr1 157145902 157145924 -40049508 + AT_rich Low_complexity Low_complexity 1 22 0 2 1783 521 208 69 0 chr1 157145951 157146052 -40049380 - PB1D10 SINE Alu -9 108 1 2 1783 269 286 27 41 chr1 157146498 157146571 -40048861 + ID4_ SINE ID 1 72 -11 2 1783 563 225 74 8 chr1 157146697 157146818 -40048614 + B3 SINE B2 1 129 -87 2 1783 387 0 0 0 chr1 157146851 157146894 -40048538 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2 1783 1128 184 40 5 chr1 157146904 157147106 -40048326 - B3 SINE B2 -7 209 1 2 1783 458 279 60 20 chr1 157147157 157147307 -40048125 + RSINE1 SINE B4 4 159 -6 2 1783 402 171 29 0 chr1 157147616 157147686 -40047746 + MurSatRep1 Unknown Unknown 212 283 -1854 2 1783 3011 68 32 15 chr1 157148713 157149113 -40046319 - L1Md_F2 LINE L1 -2 6580 6174 2 1783 1032 107 6 63 chr1 157149155 157149314 -40046118 - B1_Mur4 SINE Alu 0 150 1 2 1783 865 271 5 38 chr1 157150975 157151186 -40044246 + ID_B1 SINE B4 3 206 -18 2 1783 661 233 85 0 chr1 157151254 157151383 -40044049 - B1_Mus1 SINE Alu -7 141 2 2 1783 1071 0 0 0 chr1 157151398 157151517 -40043915 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 2 1783 231 264 0 19 chr1 157151752 157151806 -40043626 - MIRc SINE MIR -85 183 131 2 1783 458 308 25 75 chr1 157151895 157152095 -40043337 + ID_B1 SINE B4 1 190 -34 2 1783 652 262 14 14 chr1 157152570 157152717 -40042715 - RSINE1 SINE B4 -16 149 3 2 1783 210 185 197 15 chr1 157152813 157152879 -40042553 - PB1D10 SINE Alu -5 112 35 2 1783 1034 264 72 0 chr1 157152993 157153228 -40042204 - B4A SINE B4 -39 253 2 2 1783 897 260 102 16 chr1 157153228 157153533 -40041899 + RMER5 LTR ERV1 204 534 0 2 1784 363 265 37 47 chr1 157155441 157155548 -40039884 - PB1D10 SINE Alu -7 110 5 2 1784 453 270 40 0 chr1 157156502 157156602 -40038830 + PB1D7 SINE Alu 3 106 -14 2 1784 913 152 36 0 chr1 157156700 157156838 -40038594 + B1_Mus1 SINE Alu 2 144 -4 2 1784 513 0 0 0 chr1 157156841 157156898 -40038534 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1784 375 269 13 0 chr1 157156959 157157037 -40038395 - ID4 SINE ID -2 81 3 2 1784 471 267 38 0 chr1 157157247 157157352 -40038080 - PB1D9 SINE Alu -10 110 2 2 1784 247 378 108 16 chr1 157157352 157157384 -40038048 - B4 SINE B4 -199 93 50 2 1784 313 254 129 93 chr1 157157909 157157929 -40037503 - ID_B1 SINE B4 -80 144 1 2 1784 758 176 8 0 chr1 157157929 157158048 -40037384 - B3 SINE B2 -96 120 1 2 1784 702 206 0 52 chr1 157158119 157158273 -40037159 + B1_Mus1 SINE Alu 1 146 -2 2 1784 544 278 216 0 chr1 157159190 157159352 -40036080 + B3 SINE B2 9 205 -11 2 1784 291 284 54 0 chr1 157159492 157159566 -40035866 - ID_B1 SINE B4 -67 157 80 2 1784 707 179 79 43 chr1 157160797 157160937 -40034495 - B1_Mus2 SINE Alu 0 147 3 2 1784 247 347 39 45 chr1 157161095 157161273 -40034159 - MIR SINE MIR 0 262 86 2 1784 28 0 0 0 chr1 157161660 157161688 -40033744 + AT_rich Low_complexity Low_complexity 1 28 0 2 1784 1405 275 56 77 chr1 157161879 157161989 -40033443 + L1MB5 LINE L1 4229 4338 -1808 2 1784 360 0 0 0 chr1 157161989 157162029 -40033403 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1784 1405 275 56 77 chr1 157162029 157162106 -40033326 + L1MB5 LINE L1 4339 4406 -1740 2 1784 1231 68 0 7 chr1 157162106 157162255 -40033177 + B1_Mus1 SINE Alu 1 148 0 2 1784 1405 275 56 77 chr1 157162255 157162782 -40032650 + L1MB5 LINE L1 4407 4929 -1217 2 1784 1032 119 0 0 chr1 157162787 157162946 -40032486 + (GAAA)n Simple_repeat Simple_repeat 1 159 0 2 1784 855 0 0 0 chr1 157162946 157163041 -40032391 + (GAGAA)n Simple_repeat Simple_repeat 1 95 0 2 1784 1225 69 0 0 chr1 157163078 157163222 -40032210 - B1_Mus2 SINE Alu -2 145 2 2 1784 442 244 244 0 chr1 157163248 157163363 -40032069 + B1_Mur1 SINE Alu 1 143 -6 2 1784 321 140 0 0 chr1 157163441 157163498 -40031934 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1784 1618 43 16 0 chr1 157163572 157163757 -40031675 + B2_Mm2 SINE B2 1 188 -7 2 1784 658 248 205 105 chr1 157163785 157164453 -40030979 + L1MB5 LINE L1 5323 6057 -117 2 1784 549 313 155 24 chr1 157164504 157164756 -40030676 + B4A SINE B4 1 285 -7 2 1784 324 158 0 0 chr1 157165006 157165063 -40030369 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1784 1487 223 135 11 chr1 157165130 157165501 -40029931 + MTD LTR MaLR 1 417 -2 2 1784 231 305 24 12 chr1 157166755 157166838 -40028594 - L1M5 LINE L1 -549 5624 5541 2 1784 32 0 0 0 chr1 157166982 157167014 -40028418 + AT_rich Low_complexity Low_complexity 1 32 0 2 1784 310 288 0 91 chr1 157167730 157167818 -40027614 - ID4_ SINE ID -3 80 1 2 1784 389 339 71 75 chr1 157167900 157168139 -40027293 + B4 SINE B4 2 239 -53 2 1784 1459 54 27 5 chr1 157168269 157168455 -40026977 + B2_Mm2 SINE B2 1 190 -5 2 1784 22 56 0 0 chr1 157168672 157168708 -40026724 + AT_rich Low_complexity Low_complexity 1 36 0 2 1784 295 329 188 62 chr1 157169027 157169351 -40026081 - L2a LINE L2 0 3426 3062 2 1784 401 307 181 9 chr1 157169976 157170203 -40025229 - L2a LINE L2 -934 2485 2220 2 1784 1153 35 28 0 chr1 157170220 157170361 -40025071 - B1_Mm SINE Alu 0 147 3 3 1784 1072 227 9 35 chr1 157170632 157170860 -40024572 - ID_B1 SINE B4 -1 223 2 3 1784 358 331 127 0 chr1 157171066 157171208 -40024224 - RSINE1 SINE B4 -3 162 3 3 1784 1024 261 26 69 chr1 157171743 157172048 -40023384 + B4A SINE B4 1 292 0 3 1784 708 254 0 0 chr1 157172682 157172820 -40022612 + ID_B1 SINE B4 87 224 0 3 1784 741 200 223 0 chr1 157173010 157173185 -40022247 - B3 SINE B2 -1 215 2 3 1784 806 261 42 4 chr1 157173281 157173574 -40021858 - L1MC3 LINE L1 -1940 5845 5536 3 1784 396 270 177 43 chr1 157173713 157173973 -40021459 - L1MC3 LINE L1 -841 5305 4991 3 1784 1281 34 0 0 chr1 157173973 157174120 -40021312 - B1_Mm SINE Alu 0 147 1 3 1784 405 301 94 24 chr1 157174120 157174461 -40020971 - L1MC3 LINE L1 -1156 4990 4610 3 1784 462 18 0 0 chr1 157174461 157174516 -40020916 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1784 422 322 114 50 chr1 157174516 157175117 -40020315 - L1MC3 LINE L1 -1537 4609 3995 3 1784 312 307 31 0 chr1 157175495 157175587 -40019845 - PB1D10 SINE Alu -21 99 3 3 1784 1292 87 49 0 chr1 157175931 157176114 -40019318 + B2_Mm2 SINE B2 3 194 -1 3 1784 3302 95 43 1 chr1 157176193 157176789 -40018643 + Lx2 LINE L1 5313 5932 -1065 3 1784 346 178 11 11 chr1 157177979 157178070 -40017362 + CT-rich Low_complexity Low_complexity 1 91 0 3 1784 299 271 194 31 chr1 157178452 157178612 -40016820 - B4A SINE B4 -1 291 106 3 1784 492 262 78 62 chr1 157178735 157178914 -40016518 + B3A SINE B2 1 182 -16 3 1784 302 264 0 0 chr1 157178976 157179048 -40016384 - B3 SINE B2 -11 205 134 3 1784 358 246 167 70 chr1 157179877 157180104 -40015328 + L1MB7 LINE L1 5541 5789 -385 3 1784 275 279 139 20 chr1 157180152 157180353 -40015079 + L1MB7 LINE L1 5913 6137 -47 3 1784 434 190 12 12 chr1 157180359 157180439 -40014993 + ID SINE ID 3 82 -142 3 1784 351 253 11 11 chr1 157180439 157180451 -40014981 + BC1_Mm scRNA scRNA 3 94 -58 3 1784 320 0 25 0 chr1 157180458 157180498 -40014934 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1784 821 259 43 16 chr1 157180977 157181401 -40014031 + RCHARR1 DNA MER1_type 1 493 -481 3 1784 488 196 83 6 chr1 157181499 157181679 -40013753 - Lx9 LINE L1 -2 7642 7449 3 1784 279 226 56 56 chr1 157181753 157181842 -40013590 - RSINE1 SINE B4 -2 163 75 3 1784 549 13 0 26 chr1 157182164 157182241 -40013191 - L1Md_F2 LINE L1 -12 6570 6496 3 1784 6600 111 37 16 chr1 157183107 157184144 -40011288 + Lx4A LINE L1 6001 7058 0 3 1784 4084 200 36 30 chr1 157184218 157185214 -40010218 + RMER1B Other Other 61 1062 -4 3 1784 445 239 109 122 chr1 157185375 157185604 -40009828 + Lx7 LINE L1 7135 7360 -336 3 1784 1017 119 11 11 chr1 157185630 157185809 -40009623 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1784 494 44 0 29 chr1 157185811 157185881 -40009551 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 3 1784 356 186 0 28 chr1 157185910 157185982 -40009450 - B1_Mur2 SINE Alu -3 146 77 3 1784 813 246 91 11 chr1 157186184 157186460 -40008972 + RCHARR1 DNA MER1_type 677 974 0 3 1784 337 218 46 0 chr1 157186463 157186550 -40008882 - MER2 DNA MER2_type -166 179 89 3 1784 261 273 26 0 chr1 157186546 157186557 -40008875 - ID_B1 SINE B4 -132 92 82 3 1784 396 0 0 0 chr1 157186557 157186601 -40008831 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1784 261 273 26 0 chr1 157186601 157186666 -40008766 - ID SINE ID -143 81 15 3 1784 321 339 52 45 chr1 157187410 157187719 -40007713 + ERVL-E-int LTR ERVL 1290 1600 -4067 3 1784 382 202 202 0 chr1 157187841 157187865 -40007567 + RMER4B LTR ERVK 434 459 -126 3 1784 210 37 0 0 chr1 157187865 157187892 -40007540 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1784 382 202 202 0 chr1 157187892 157187976 -40007456 + RMER4B LTR ERVK 460 563 -22 3 1784 355 278 42 0 chr1 157187997 157188141 -40007291 - L1M2 LINE L1 -1478 4662 4513 3 1784 1562 244 91 28 chr1 157188293 157188931 -40006501 - L1M2 LINE L1 -1766 4377 3700 3 1784 1330 89 10 5 chr1 157189034 157189226 -40006206 + B2_Mm2 SINE B2 1 193 -2 3 1784 1078 77 0 0 chr1 157189306 157189449 -40005983 - B2_Mm2 SINE B2 -52 143 1 3 1784 568 272 7 22 chr1 157190234 157190373 -40005059 + B1_Mur1 SINE Alu 5 141 -8 3 1784 22 70 0 0 chr1 157190482 157190525 -40004907 + AT_rich Low_complexity Low_complexity 1 43 0 3 1784 568 132 244 9 chr1 157190577 157190692 -40004740 + B1_Mus2 SINE Alu 6 147 0 3 1784 1186 75 0 0 chr1 157190696 157190843 -40004589 + B1_Mus2 SINE Alu 1 147 0 3 1784 291 175 0 0 chr1 157190843 157190900 -40004532 + A-rich Low_complexity Low_complexity 1 57 0 3 1784 649 301 45 30 chr1 157191064 157191328 -40004104 - ORR1E LTR MaLR -88 271 4 3 1784 220 309 93 7 chr1 157191332 157191482 -40003950 + L2 LINE L2 2155 2317 -1102 3 1784 180 111 0 0 chr1 157192001 157192028 -40003404 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1784 188 135 27 0 chr1 157193789 157193826 -40001606 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1784 308 331 123 6 chr1 157194931 157195110 -40000322 + L1M5 LINE L1 5073 5272 -874 3 1784 251 293 95 41 chr1 157195250 157195492 -39999940 + L1M5 LINE L1 5344 5598 -526 3 1784 297 211 0 0 chr1 157196224 157196281 -39999151 - B3A SINE B2 -140 58 2 3 1784 510 281 105 79 chr1 157196281 157196509 -39998923 + MLT1A0 LTR MaLR 126 359 -6 3 1784 350 281 61 9 chr1 157197568 157197683 -39997749 + MER20 DNA MER1_type 38 158 -61 3 1784 235 297 195 0 chr1 157198225 157198343 -39997089 - L2a LINE L2 -5 3421 3281 3 1784 921 255 119 65 chr1 157199478 157199712 -39995720 - Charlie2b DNA MER1_type -1 2781 2524 3 1784 339 284 0 0 chr1 157199712 157199793 -39995639 + ID2 SINE ID 2 82 -1 3 1784 921 255 119 65 chr1 157199793 157200224 -39995208 - Charlie2b DNA MER1_type -259 2523 2080 3 1784 640 314 107 32 chr1 157200781 157201090 -39994342 + MLT1A LTR MaLR 27 358 -16 3 1784 427 189 222 19 chr1 157202242 157202350 -39993082 + B1_Mur2 SINE Alu 19 148 -1 3 1784 401 317 50 0 chr1 157202372 157202533 -39992899 + L1M5 LINE L1 5600 5768 -411 3 1784 435 240 29 20 chr1 157203524 157203626 -39991806 + B1_Mus2 SINE Alu 23 125 -22 3 1784 399 324 54 61 chr1 157203721 157203869 -39991563 + RSINE1 SINE B4 2 148 -17 3 1784 322 309 50 29 chr1 157203930 157204070 -39991362 + B1F SINE Alu 7 149 0 3 1784 181 386 14 0 chr1 157204076 157204146 -39991286 + L2a LINE L2 3300 3370 -56 3 1784 22 35 0 0 chr1 157204289 157204318 -39991114 + AT_rich Low_complexity Low_complexity 1 29 0 3 1784 886 144 7 33 chr1 157204407 157204558 -39990874 + B1_Mur3 SINE Alu 3 149 0 3 1784 320 308 196 54 chr1 157205080 157205320 -39990112 - B4 SINE B4 -7 285 12 3 1784 409 217 24 0 chr1 157205474 157205557 -39989875 + B1_Mur3 SINE Alu 5 89 -60 3 1784 915 92 0 0 chr1 157205559 157205712 -39989720 + (GA)n Simple_repeat Simple_repeat 2 154 0 3 1784 522 230 121 73 chr1 157205839 157206045 -39989387 + B3 SINE B2 1 216 0 3 1784 450 171 0 0 chr1 157206054 157206124 -39989308 - B1_Mur1 SINE Alu -11 138 69 3 1784 24 0 0 0 chr1 157207089 157207113 -39988319 + AT_rich Low_complexity Low_complexity 1 24 0 3 1784 4025 167 88 52 chr1 157207190 157207334 -39988098 + Lx2B LINE L1 5936 6090 -910 3 1784 180 0 0 0 chr1 157207334 157207354 -39988078 + (TGG)n Simple_repeat Simple_repeat 2 21 0 3 1784 4025 167 88 52 chr1 157207354 157208227 -39987205 + Lx2B LINE L1 6091 6989 -11 3 1784 895 214 152 94 chr1 157208725 157208866 -39986566 + RMER1C Other Other 918 1044 -298 3 1784 948 159 31 26 chr1 157208866 157209060 -39986372 + B2_Mm2 SINE B2 1 195 0 3 1784 895 214 152 94 chr1 157209060 157209320 -39986112 + RMER1C Other Other 1045 1342 0 3 1784 306 177 235 20 chr1 157209493 157209591 -39985841 + PB1D9 SINE Alu 2 120 0 3 1784 862 37 0 0 chr1 157210094 157210201 -39985231 + B1_Mus2 SINE Alu 31 137 -10 3 1784 216 0 0 0 chr1 157210201 157210225 -39985207 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1784 734 128 96 0 chr1 157210698 157210823 -39984609 - B1_Mus1 SINE Alu -6 142 6 3 1784 399 276 94 8 chr1 157211244 157211355 -39984077 + B1F1 SINE Alu 11 133 -16 3 1784 866 221 76 10 chr1 157211355 157211552 -39983880 + B3 SINE B2 1 210 -6 3 1784 399 276 94 8 chr1 157211552 157211568 -39983864 + B1F1 SINE Alu 134 149 0 3 1784 450 228 0 0 chr1 157211573 157211652 -39983780 + B1_Mus1 SINE Alu 1 79 -69 3 1784 26 82 0 0 chr1 157212281 157212342 -39983090 + AT_rich Low_complexity Low_complexity 1 61 0 3 1784 775 218 138 0 chr1 157212410 157212598 -39982834 - B3 SINE B2 -1 215 2 3 1784 542 239 21 28 chr1 157213050 157213192 -39982240 - Charlie1a DNA MER1_type -560 895 755 3 1784 354 253 0 13 chr1 157213204 157213280 -39982152 - ID4 SINE ID -8 75 1 3 1784 456 199 408 7 chr1 157213305 157213452 -39981980 - B3 SINE B2 -10 206 1 3 1784 504 264 16 16 chr1 157213616 157213739 -39981693 + MLT1A0 LTR MaLR 2 124 -241 3 1784 226 272 160 21 chr1 157213780 157213874 -39981558 + B1F SINE Alu 43 149 0 3 1784 673 302 18 27 chr1 157214073 157214294 -39981138 - Charlie1a DNA MER1_type -756 699 481 3 1784 250 290 110 82 chr1 157215907 157216298 -39979134 + L1MEf LINE L1 1282 1683 -4517 3 1784 292 209 148 23 chr1 157216482 157216570 -39978862 - B4 SINE B4 -179 113 15 3 1784 383 350 67 24 chr1 157216726 157216934 -39978498 - MER119 DNA MER1_type -250 333 117 3 1784 191 170 0 21 chr1 157217148 157217196 -39978236 + GA-rich Low_complexity Low_complexity 1 47 0 3 1784 299 219 41 0 chr1 157217531 157217604 -39977828 + 5S rRNA rRNA 14 89 -32 3 1784 256 227 107 0 chr1 157217542 157217617 -39977815 + AmnSINE1 SINE SINE 23 105 -470 3 1784 383 186 10 0 chr1 157218061 157218158 -39977274 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1784 244 349 34 136 chr1 157218610 157218719 -39976713 - MER5B DNA MER1_type -18 160 64 3 1784 419 0 0 19 chr1 157218719 157218771 -39976661 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 3 1784 598 174 141 0 chr1 157218772 157218893 -39976539 - B1_Mur2 SINE Alu -11 138 1 3 1784 244 349 34 136 chr1 157218893 157218957 -39976475 - MER5B DNA MER1_type -115 63 3 3 1784 299 25 25 0 chr1 157219380 157219420 -39976012 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1784 228 361 108 8 chr1 157219649 157219769 -39975663 - MER63A DNA AcHobo -77 133 2 3 1784 209 370 102 40 chr1 157219952 157220177 -39975255 - L3 LINE CR1 -1005 3484 3246 4 1784 589 307 108 77 chr1 157220540 157221150 -39974282 + L1M5 LINE L1 3087 3715 -2431 4 1784 621 0 0 0 chr1 157221165 157221234 -39974198 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1784 216 390 0 0 chr1 157221692 157221787 -39973645 + C-rich Low_complexity Low_complexity 1 95 0 4 1784 210 191 0 0 chr1 157221815 157221857 -39973575 + T-rich Low_complexity Low_complexity 1 42 0 4 1784 386 206 100 30 chr1 157221864 157221964 -39973468 - PB1D10 SINE Alu -10 107 1 4 1784 1026 92 14 0 chr1 157222002 157222144 -39973288 - B1_Mur3 SINE Alu -1 148 5 4 1784 310 286 93 23 chr1 157222255 157222384 -39973048 + L1MC LINE L1 3875 4012 -2134 4 1784 985 160 0 0 chr1 157223200 157223344 -39972088 + B1_Mus1 SINE Alu 3 146 -2 4 1784 296 242 26 154 chr1 157223546 157223574 -39971858 - ID_B1 SINE B4 0 224 146 4 1784 332 195 84 12 chr1 157223574 157223657 -39971775 - B1F SINE Alu -13 136 48 4 1784 331 171 111 28 chr1 157224171 157224243 -39971189 - PB1D10 SINE Alu -7 110 33 4 1784 189 0 0 0 chr1 157225130 157225151 -39970281 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1784 310 298 134 92 chr1 157225386 157225878 -39969554 + L1MC5 LINE L1 6721 7233 -728 4 1784 375 249 20 11 chr1 157225889 157226006 -39969426 + MLT1C LTR MaLR 377 462 -5 4 1784 1042 252 55 112 chr1 157227167 157227450 -39967982 - MTE2a LTR MaLR 0 379 107 4 1784 862 193 28 7 chr1 157227450 157227582 -39967850 + B1_Mur2 SINE Alu 1 136 -13 4 1784 221 0 0 33 chr1 157227582 157227612 -39967820 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1784 1042 252 55 112 chr1 157227620 157227738 -39967694 - MTE2a LTR MaLR -273 106 1 4 1784 21 57 0 0 chr1 157227775 157227810 -39967622 + AT_rich Low_complexity Low_complexity 1 35 0 4 1784 451 276 79 73 chr1 157227820 157227984 -39967448 - RSINE1 SINE B4 0 165 1 4 1784 262 0 53 0 chr1 157229637 157229675 -39965757 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1784 408 40 0 0 chr1 157229790 157229840 -39965592 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1784 438 319 13 34 chr1 157229844 157229993 -39965439 - RSINE1 SINE B4 -17 148 3 4 1784 390 275 140 0 chr1 157230112 157230283 -39965149 - L1MC3 LINE L1 0 7785 7591 4 1784 238 345 0 0 chr1 157230565 157230623 -39964809 + B1F2 SINE Alu 3 60 -89 4 1784 242 306 12 12 chr1 157230839 157230925 -39964507 + B2_Mm2 SINE B2 1 86 -109 4 1784 189 107 0 0 chr1 157231078 157231106 -39964326 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 4 1784 413 317 100 63 chr1 157231274 157231513 -39963919 - ORR1D2 LTR MaLR -111 248 1 4 1784 405 0 0 0 chr1 157231578 157231623 -39963809 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 4 1784 478 279 46 8 chr1 157232065 157232195 -39963237 + RSINE1 SINE B4 2 136 -29 4 1784 333 256 35 0 chr1 157232288 157232374 -39963058 - B1_Mur3 SINE Alu -55 94 6 4 1784 208 139 0 0 chr1 157232440 157232476 -39962956 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1784 569 206 97 22 chr1 157232598 157232732 -39962700 + RSINE1 SINE B4 5 148 -17 4 1784 945 101 110 30 chr1 157232785 157232937 -39962495 + B2_Mm2 SINE B2 13 181 -14 4 1784 5129 66 14 2 chr1 157232937 157233559 -39961873 - L1Md_T LINE L1 -12 6570 5941 4 1784 945 101 110 30 chr1 157233559 157233570 -39961862 + B2_Mm2 SINE B2 182 189 -6 4 1784 398 391 72 38 chr1 157234277 157234567 -39960865 + MER21B LTR ERV1 1 300 -563 4 1784 921 255 165 19 chr1 157234846 157235330 -39960102 + L1M3 LINE L1 2771 3325 -2815 4 1784 324 208 9 19 chr1 157235351 157235459 -39959973 + GA-rich Low_complexity Low_complexity 2 108 0 4 1784 348 278 94 21 chr1 157235673 157235891 -39959541 + L1M3 LINE L1 5327 5556 -633 4 1784 1006 290 11 7 chr1 157235891 157236176 -39959256 + B4A SINE B4 1 286 -6 4 1784 228 291 0 0 chr1 157236206 157236261 -39959171 + GA-rich Low_complexity Low_complexity 2 56 0 4 1784 1060 272 7 63 chr1 157236419 157236721 -39958711 - MTEa-int LTR MaLR -551 1029 745 4 1784 546 314 29 0 chr1 157236742 157236917 -39958515 + Lx8 LINE L1 6717 6896 -577 4 1784 275 200 0 0 chr1 157236929 157236984 -39958448 - MTEa-int LTR MaLR -862 718 664 4 1784 994 281 96 16 chr1 157236994 157237359 -39958073 - Lx8 LINE L1 -1 7472 7079 4 1784 1345 198 27 190 chr1 157237493 157237935 -39957497 + ORR1D1 LTR MaLR 5 374 0 4 1784 2226 262 48 43 chr1 157238058 157238729 -39956703 - MTEa-int LTR MaLR -906 674 1 4 1784 978 243 130 58 chr1 157238732 157238976 -39956456 - MTEa LTR MaLR -7 372 103 4 1784 250 26 0 49 chr1 157238976 157239017 -39956415 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1784 1138 74 7 0 chr1 157239017 157239152 -39956280 - B1_Mm SINE Alu -10 137 2 4 1784 978 243 130 58 chr1 157239152 157239251 -39956181 - MTEa LTR MaLR -277 102 4 4 1784 1228 68 0 0 chr1 157239256 157239402 -39956030 + B1_Mus2 SINE Alu 2 147 0 4 1784 198 0 0 0 chr1 157239402 157239424 -39956008 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1784 1284 48 0 0 chr1 157239557 157239704 -39955728 + B1_Mus1 SINE Alu 2 148 0 4 1784 808 321 236 3 chr1 157239940 157240326 -39955106 + MLT1F LTR MaLR 19 497 -72 4 1784 776 256 48 39 chr1 157240553 157240760 -39954672 + B3A SINE B2 8 216 0 4 1784 857 249 29 24 chr1 157240797 157241007 -39954425 + B3 SINE B2 1 211 -5 4 1784 22 56 0 0 chr1 157241007 157241043 -39954389 + AT_rich Low_complexity Low_complexity 1 36 0 4 1784 615 27 0 0 chr1 157241582 157241655 -39953777 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1784 225 0 0 0 chr1 157242616 157242641 -39952791 + (CATTT)n Simple_repeat Simple_repeat 4 28 0 4 1784 782 135 83 0 chr1 157242771 157242904 -39952528 - B1_Mus1 SINE Alu 0 148 5 4 1784 4689 33 0 0 chr1 157242941 157243455 -39951977 - L1Md_T LINE L1 -2 6580 6067 4 1784 1598 50 0 6 chr1 157243455 157243637 -39951795 - B2_Mm1a SINE B2 -12 181 1 4 1784 390 245 105 29 chr1 157243685 157243790 -39951642 + B1_Mur1 SINE Alu 37 149 0 4 1784 387 168 10 21 chr1 157244234 157244331 -39951101 + CT-rich Low_complexity Low_complexity 2 97 0 4 1784 217 214 0 67 chr1 157244346 157244406 -39951026 - ID4_ SINE ID -9 74 19 4 1784 383 320 98 62 chr1 157244782 157245119 -39950313 + HAL1 LINE L1 4 352 -2155 4 1784 805 265 83 20 chr1 157245376 157245630 -39949802 + B4A SINE B4 1 270 -22 4 1784 1164 128 73 0 chr1 157246372 157246551 -39948881 + B2_Mm2 SINE B2 2 193 -2 4 1784 351 65 0 0 chr1 157246799 157246845 -39948587 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1784 462 284 8 45 chr1 157246845 157246978 -39948454 - RSINE1 SINE B4 -16 149 22 4 1784 733 224 73 0 chr1 157247233 157247412 -39948020 - MER3 DNA MER1_type -17 192 1 4 1784 1215 82 0 71 chr1 157247531 157247714 -39947718 + L1_Mus1 LINE L1 6398 6567 0 4 1784 439 256 0 0 chr1 157247894 157247976 -39947456 + ID4_ SINE ID 1 82 -1 4 1784 609 246 95 76 chr1 157248047 157248205 -39947227 - RSINE1 SINE B4 -2 163 3 4 1784 1254 95 0 0 chr1 157248240 157248419 -39947013 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1784 831 55 0 0 chr1 157248422 157248531 -39946901 + (GAGAA)n Simple_repeat Simple_repeat 1 109 0 4 1784 1368 55 11 11 chr1 157248550 157248735 -39946697 + B2_Mm1t SINE B2 7 191 -2 4 1784 314 125 86 54 chr1 157249399 157249492 -39945940 + Lx9 LINE L1 7544 7639 -5 4 1784 197 244 75 30 chr1 157249506 157249585 -39945847 + MIRb SINE MIR 26 107 -155 4 1784 229 297 179 42 chr1 157250057 157250152 -39945280 + PB1D7 SINE Alu 12 119 -1 4 1784 213 197 40 0 chr1 157250285 157250361 -39945071 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1784 990 130 155 68 chr1 157250758 157250791 -39944641 - URR1B DNA MER1_type 0 225 195 4 1784 1478 65 49 0 chr1 157250791 157250976 -39944456 - B2_Mm2 SINE B2 -1 194 1 4 1784 990 130 155 68 chr1 157250976 157251149 -39944283 - URR1B DNA MER1_type -31 194 1 4 1784 2188 89 19 37 chr1 157251515 157251683 -39943749 + ORR1A2 LTR MaLR 1 168 -159 4 1784 1180 56 0 47 chr1 157251683 157251825 -39943607 + B1_Mm SINE Alu 1 136 -11 4 1784 232 48 23 23 chr1 157251825 157251868 -39943564 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1784 2188 89 19 37 chr1 157251875 157252031 -39943401 + ORR1A2 LTR MaLR 169 319 -8 4 1784 11482 122 76 30 chr1 157252035 157252981 -39942451 + ORR1A2-int LTR MaLR 1 1041 -922 4 1784 1207 75 7 0 chr1 157252981 157253127 -39942305 + B1_Mm SINE Alu 1 147 0 4 1784 11482 122 76 30 chr1 157253127 157254058 -39941374 + ORR1A2-int LTR MaLR 1042 1963 0 4 1784 2442 108 9 9 chr1 157254059 157254385 -39941047 + ORR1A2 LTR MaLR 2 327 0 4 1784 249 33 0 0 chr1 157254675 157254705 -39940727 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1784 1152 95 0 13 chr1 157254705 157254854 -39940578 - B1_Mus1 SINE Alu 0 148 2 4 1784 383 236 16 113 chr1 157254917 157255041 -39940391 + MT2B LTR ERVL 146 257 -344 4 1784 906 82 66 22 chr1 157254940 157255077 -39940355 + B1_Mus1 SINE Alu 6 148 0 4 1784 307 150 0 32 chr1 157255427 157255489 -39939943 - MIR SINE MIR -25 237 178 4 1784 253 348 0 0 chr1 157255667 157255756 -39939676 - MIR SINE MIR -77 185 97 4 1784 447 278 37 22 chr1 157255756 157255930 -39939502 + ID_B1 SINE B4 2 219 -5 4 1784 640 223 23 0 chr1 157255805 157255935 -39939497 + B1_Mur3 SINE Alu 17 149 0 4 1784 244 284 176 33 chr1 157256047 157256138 -39939294 - MIR SINE MIR -138 124 21 4 1784 1215 105 41 0 chr1 157256407 157256578 -39938854 + B2_Mm1t SINE B2 2 179 -14 4 1784 1263 62 0 0 chr1 157256785 157256929 -39938503 + B1_Mus2 SINE Alu 2 145 -2 4 1784 241 180 39 20 chr1 157257208 157257259 -39938173 + MIRb SINE MIR 207 258 -10 4 1784 213 39 0 0 chr1 157257262 157257288 -39938144 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 4 1784 298 289 186 16 chr1 157257377 157257560 -39937872 + MIRb SINE MIR 55 268 0 4 1784 671 303 37 42 chr1 157257817 157258034 -39937398 + ID_B1 SINE B4 1 216 -8 4 1784 1042 249 13 4 chr1 157258167 157258393 -39937039 + B4A SINE B4 2 229 -63 4 1784 506 184 7 183 chr1 157258394 157258547 -39936885 + B1_Mus2 SINE Alu 2 127 -20 4 1784 466 198 43 21 chr1 157258562 157258655 -39936777 + PB1D9 SINE Alu 19 113 -7 4 1784 428 273 170 31 chr1 157258655 157258721 -39936711 + B4A SINE B4 104 284 -8 5 1784 307 291 153 58 chr1 157258958 157259388 -39936044 - Charlie7 DNA MER1_type -1892 720 250 5 1784 423 176 27 13 chr1 157260169 157260244 -39935188 + ID4_ SINE ID 4 79 -4 5 1784 21 57 0 0 chr1 157260301 157260336 -39935096 + AT_rich Low_complexity Low_complexity 1 35 0 5 1784 809 159 72 7 chr1 157260349 157260488 -39934944 - B1_Mur2 SINE Alu -1 148 1 5 1784 477 0 0 0 chr1 157260780 157260833 -39934599 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1784 213 65 0 0 chr1 157260861 157260892 -39934540 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1784 183 80 0 0 chr1 157261520 157261545 -39933887 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1784 540 0 0 0 chr1 157263277 157263337 -39932095 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 5 1784 245 211 0 50 chr1 157265387 157265447 -39929985 - MIR SINE MIR -32 230 174 5 1784 285 29 0 0 chr1 157265518 157265552 -39929880 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1784 419 204 212 81 chr1 157265725 157265885 -39929547 + B3A SINE B2 1 181 -17 5 1784 1352 107 17 0 chr1 157265919 157266097 -39929335 + B2_Mm2 SINE B2 1 181 -14 5 1784 435 77 286 7 chr1 157266127 157266241 -39929191 + B2_Mm2 SINE B2 47 195 0 5 1784 768 204 0 28 chr1 157266620 157266761 -39928671 - B1_Mur1 SINE Alu -11 138 2 5 1784 1254 62 0 0 chr1 157266927 157267072 -39928360 + B1_Mm SINE Alu 1 145 -2 5 1784 225 0 0 0 chr1 157267074 157267099 -39928333 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1784 190 266 191 86 chr1 157267494 157267646 -39927786 + L2b LINE L2 3187 3354 -21 5 1784 267 296 0 12 chr1 157267651 157267733 -39927699 + GA-rich Low_complexity Low_complexity 2 82 0 5 1784 198 0 0 0 chr1 157267791 157267813 -39927619 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1784 198 0 0 0 chr1 157267826 157267848 -39927584 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1784 1136 81 0 0 chr1 157267848 157267984 -39927448 - B1_Mus2 SINE Alu -9 138 3 5 1784 330 307 55 69 chr1 157268015 157268232 -39927200 + MIRb SINE MIR 6 219 -49 5 1784 449 287 105 11 chr1 157268271 157268461 -39926971 - MIR SINE MIR -22 240 33 5 1784 300 361 139 35 chr1 157268575 157268948 -39926484 - L2 LINE L2 -1021 2398 1987 5 1784 1488 75 16 5 chr1 157269619 157269808 -39925624 + B2_Mm2 SINE B2 5 195 0 5 1784 886 188 155 5 chr1 157269821 157270008 -39925424 + B3 SINE B2 1 215 -1 5 1784 450 203 126 28 chr1 157270148 157270276 -39925156 - B4A SINE B4 -149 143 5 5 1784 1875 141 35 93 chr1 157270392 157270768 -39924664 + ORR1B1 LTR MaLR 41 394 0 5 1784 389 288 54 97 chr1 157270970 157271228 -39924204 - L2a LINE L2 -191 3235 2989 5 1784 524 322 97 51 chr1 157271402 157271951 -39923481 - L1MB4 LINE L1 -20 6160 5587 5 1784 628 299 64 86 chr1 157272051 157272471 -39922961 - MLT1C LTR MaLR -56 411 1 5 1784 264 304 0 32 chr1 157272525 157272620 -39922812 - L2a LINE L2 -729 2690 2599 5 1784 24 32 0 0 chr1 157272714 157272745 -39922687 + AT_rich Low_complexity Low_complexity 1 31 0 5 1784 544 305 138 22 chr1 157272745 157273101 -39922331 - L2a LINE L2 -834 2585 2189 5 1784 201 291 154 15 chr1 157273138 157273226 -39922206 - L2a LINE L2 -1547 1872 1767 5 1784 324 0 0 0 chr1 157273226 157273262 -39922170 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1784 201 291 154 15 chr1 157273262 157273309 -39922123 - L2a LINE L2 -1653 1766 1719 5 1784 616 215 6 6 chr1 157273566 157273725 -39921707 + GA-rich Low_complexity Low_complexity 2 160 0 5 1784 342 0 0 0 chr1 157273849 157273887 -39921545 + (ATG)n Simple_repeat Simple_repeat 2 39 0 5 1784 269 203 0 0 chr1 157274126 157274185 -39921247 - MIRc SINE MIR -107 161 106 5 1784 325 295 81 25 chr1 157274487 157274647 -39920785 + MLT1N2 LTR MaLR 389 557 -5 5 1784 549 183 0 0 chr1 157274726 157274819 -39920613 + ERVL-E-int LTR ERVL 3989 4081 -1586 5 1784 201 135 54 0 chr1 157275295 157275332 -39920100 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5 1784 449 234 26 35 chr1 157275333 157275448 -39919984 - B1F SINE Alu -15 134 21 5 1784 555 16 0 0 chr1 157275894 157275958 -39919474 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1784 378 203 0 15 chr1 157275965 157276030 -39919402 - ID4 SINE ID -17 66 3 5 1784 383 227 118 22 chr1 157276117 157276252 -39919180 + LTR33B LTR ERVL 349 496 -7 5 1784 207 0 0 0 chr1 157276253 157276276 -39919156 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1784 198 0 0 0 chr1 157277046 157277068 -39918364 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 5 1784 670 253 18 31 chr1 157277350 157277513 -39917919 + RSINE1 SINE B4 3 163 -2 5 1784 203 175 0 0 chr1 157277594 157277634 -39917798 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 5 1784 186 43 0 0 chr1 157278387 157278410 -39917022 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1784 702 128 0 113 chr1 157278717 157278867 -39916565 + ORR1D1 LTR MaLR 1 133 -241 5 1784 617 91 0 0 chr1 157278868 157278956 -39916476 + ORR1D1 LTR MaLR 297 384 0 5 1784 259 297 166 0 chr1 157278956 157279101 -39916331 + L2 LINE L2 2694 2862 -557 5 1784 188 263 18 0 chr1 157279229 157279286 -39916146 + L2 LINE L2 3022 3079 -340 5 1784 855 235 53 10 chr1 157279289 157279495 -39915937 + ID_B1 SINE B4 3 217 -7 5 1784 3479 191 171 35 chr1 157279717 157280688 -39914744 - RLTR25A LTR ERVK 0 1103 1 5 1784 255 114 0 0 chr1 157280764 157280808 -39914624 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 5 1784 500 224 10 6 chr1 157280848 157280956 -39914476 - B1_Mur4 SINE Alu 0 150 10 5 1784 364 275 71 143 chr1 157281733 157282195 -39913237 + RLTR40 LTR ERVK 137 565 -252 5 1784 773 171 21 21 chr1 157282211 157282344 -39913088 + B1_Mur2 SINE Alu 1 132 -17 5 1784 558 0 0 0 chr1 157282344 157282406 -39913026 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1784 1214 48 7 0 chr1 157282466 157282612 -39912820 - B1_Mm SINE Alu 0 147 1 5 1784 529 230 36 24 chr1 157283288 157283453 -39911979 + MLT1B LTR MaLR 23 189 -201 5 1784 859 207 99 22 chr1 157283452 157283674 -39911758 + B4A SINE B4 28 266 -26 5 1784 357 24 0 0 chr1 157283674 157283716 -39911716 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1784 469 281 94 35 chr1 157283786 157283989 -39911443 + MLT1B LTR MaLR 228 442 -25 5 1784 433 297 47 88 chr1 157284017 157284209 -39911223 + B3A SINE B2 2 185 -13 5 1784 634 171 8 39 chr1 157284331 157284459 -39910973 - B1_Mur1 SINE Alu -3 146 23 5 1784 728 176 96 0 chr1 157284727 157284863 -39910569 + B1_Mur3 SINE Alu 1 149 0 5 1784 478 222 26 112 chr1 157285940 157286092 -39909340 + ID_B1 SINE B4 86 224 0 5 1784 190 258 121 20 chr1 157286093 157286192 -39909240 - MIR SINE MIR -126 136 28 5 1785 1181 49 0 0 chr1 157288631 157288773 -39906659 - B1_Mus1 SINE Alu -6 142 1 5 1785 198 0 0 0 chr1 157290224 157290246 -39905186 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1785 186 71 0 0 chr1 157290754 157290782 -39904650 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1785 1083 52 7 15 chr1 157290782 157290919 -39904513 - B1_Mm SINE Alu -9 138 3 5 1785 336 48 0 0 chr1 157291732 157291774 -39903658 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 5 1785 1159 55 14 0 chr1 157292014 157292159 -39903273 + B1_Mus1 SINE Alu 2 148 0 5 1785 1233 48 0 0 chr1 157292166 157292313 -39903119 + B1_Mm SINE Alu 1 147 0 5 1785 919 147 7 7 chr1 157292454 157292598 -39902834 + B1_Mus1 SINE Alu 4 147 -1 5 1785 456 77 0 0 chr1 157292828 157292893 -39902539 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1785 429 276 0 0 chr1 157292898 157292996 -39902436 - B3A SINE B2 -43 155 58 5 1785 735 264 105 64 chr1 157293141 157293408 -39902024 + B4A SINE B4 1 278 -14 5 1785 226 287 43 0 chr1 157293434 157293528 -39901904 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1785 303 368 76 40 chr1 157293545 157293822 -39901610 + L1MC LINE L1 5438 5724 -2158 5 1785 787 274 45 40 chr1 157294103 157294448 -39900984 + L1MB7 LINE L1 5648 5997 -187 5 1785 537 276 63 18 chr1 157294744 157294965 -39900467 + RMER15 LTR ERVL 326 556 -19 5 1785 585 0 0 0 chr1 157295182 157295247 -39900185 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1785 369 109 0 0 chr1 157295247 157295310 -39900122 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1785 404 194 157 0 chr1 157295313 157295421 -39900011 + L1MB7 LINE L1 6050 6174 0 5 1785 763 162 49 7 chr1 157295429 157295572 -39899860 + B1_Mur2 SINE Alu 1 149 0 5 1785 978 155 0 0 chr1 157295574 157295722 -39899710 + B1_Mus1 SINE Alu 1 148 0 5 1785 242 259 90 27 chr1 157297856 157297967 -39897465 + MT2B LTR ERVL 145 262 -339 5 1785 363 204 174 0 chr1 157297880 157297978 -39897454 + B1F SINE Alu 6 120 -29 5 1785 1045 251 3 110 chr1 157298178 157298505 -39896927 - B4A SINE B4 0 292 1 5 1785 806 229 16 27 chr1 157298567 157298751 -39896681 - B3A SINE B2 -16 182 1 5 1785 763 188 20 14 chr1 157298792 157298938 -39896494 - B1_Mur3 SINE Alu 0 149 3 5 1785 746 242 44 34 chr1 157299129 157299334 -39896098 - B4 SINE B4 -4 288 82 5 1785 1961 158 14 11 chr1 157299349 157299702 -39895730 + ORR1B1 LTR MaLR 41 394 0 5 1785 364 250 0 0 chr1 157299702 157299782 -39895650 - B4 SINE B4 -212 80 1 5 1785 289 109 18 18 chr1 157301120 157301176 -39894256 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 5 1785 226 189 37 19 chr1 157302482 157302536 -39892896 + L1MA6 LINE L1 6246 6300 0 5 1785 486 146 0 0 chr1 157303086 157303168 -39892264 + (CTA)n Simple_repeat Simple_repeat 2 83 0 5 1785 375 325 25 8 chr1 157303187 157303305 -39892127 - RSINE1 SINE B4 -3 162 43 5 1785 405 0 0 0 chr1 157303316 157303361 -39892071 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1785 345 207 0 0 chr1 157303361 157303443 -39891989 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1785 1191 27 7 14 chr1 157303495 157303643 -39891789 + B1_Mm SINE Alu 1 147 0 5 1785 369 0 0 0 chr1 157303666 157303707 -39891725 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 6 1785 589 282 11 28 chr1 157304098 157304277 -39891155 + B3A SINE B2 7 182 -16 6 1785 911 215 28 60 chr1 157304355 157304573 -39890859 - B3 SINE B2 -5 211 1 6 1785 1161 49 7 0 chr1 157304588 157304730 -39890702 - B1_Mus1 SINE Alu -1 147 5 6 1785 854 107 140 0 chr1 157304768 157304918 -39890514 + B2_Mm1t SINE B2 1 171 -22 6 1785 22 35 0 0 chr1 157304951 157304980 -39890452 + AT_rich Low_complexity Low_complexity 1 29 0 6 1785 531 0 0 0 chr1 157305087 157305146 -39890286 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1785 335 316 0 48 chr1 157305809 157305885 -39889547 + RSINE1 SINE B4 3 77 -88 6 1785 544 50 0 24 chr1 157305885 157305967 -39889465 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1785 335 316 0 48 chr1 157305967 157305993 -39889439 + RSINE1 SINE B4 78 100 -65 6 1785 915 113 14 14 chr1 157307701 157307845 -39887587 + B1_Mm SINE Alu 2 145 -2 6 1785 342 0 0 0 chr1 157308155 157308193 -39887239 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 6 1785 266 182 0 0 chr1 157308193 157308237 -39887195 - B3 SINE B2 -23 193 150 6 1785 799 161 27 70 chr1 157308244 157308431 -39887001 - B3 SINE B2 -36 180 2 6 1785 225 0 0 0 chr1 157308436 157308461 -39886971 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1785 280 279 94 114 chr1 157309005 157309207 -39886225 - MamRep1879 DNA hAT? -16 200 3 6 1785 953 126 16 52 chr1 157311374 157311566 -39883866 - RMER5 LTR ERV1 -4 530 346 6 1785 861 127 8 0 chr1 157311574 157311708 -39883724 + B1_Mus2 SINE Alu 12 146 -1 6 1785 1336 164 77 15 chr1 157311717 157311990 -39883442 - RMER5 LTR ERV1 -192 342 53 6 1785 254 268 0 18 chr1 157312692 157312749 -39882683 - PB1D10 SINE Alu -10 107 52 6 1785 195 42 0 0 chr1 157312790 157312814 -39882618 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 6 1785 338 215 24 37 chr1 157312829 157312911 -39882521 - ID_B1 SINE B4 -63 161 81 6 1785 342 315 26 39 chr1 157313132 157313287 -39882145 - MLT1G LTR MaLR 0 595 443 6 1785 445 300 104 57 chr1 157313393 157313605 -39881827 - MLT1G LTR MaLR -339 252 31 6 1785 312 91 0 0 chr1 157313772 157313816 -39881616 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1785 225 0 0 0 chr1 157314132 157314157 -39881275 + (TAA)n Simple_repeat Simple_repeat 1 25 0 6 1785 274 293 39 39 chr1 157314245 157314348 -39881084 + LTR78 LTR ERV1 277 379 -925 6 1785 432 0 0 0 chr1 157314908 157314956 -39880476 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1785 235 289 0 126 chr1 157314993 157315088 -39880344 - PB1D9 SINE Alu -37 83 1 6 1785 1224 130 0 15 chr1 157315096 157315291 -39880141 - B2_Mm2 SINE B2 -3 192 1 6 1785 498 248 85 28 chr1 157315356 157315497 -39879935 + B1F SINE Alu 1 149 0 6 1785 1234 41 0 7 chr1 157315686 157315834 -39879598 + B1_Mus2 SINE Alu 1 147 0 6 1785 274 179 28 69 chr1 157315859 157315931 -39879501 - PB1D10 SINE Alu -9 108 40 6 1785 464 268 0 35 chr1 157317151 157317267 -39878165 + ID_B1 SINE B4 108 219 -5 6 1785 1197 200 5 0 chr1 157317276 157317486 -39877946 + B3 SINE B2 1 211 -5 6 1785 762 160 20 20 chr1 157317651 157317798 -39877634 + B1_Mur4 SINE Alu 4 150 0 6 1785 288 0 0 0 chr1 157317824 157317856 -39877576 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1785 194 203 145 0 chr1 157318926 157318995 -39876437 + MIRb SINE MIR 180 258 -10 6 1785 194 150 0 24 chr1 157319185 157319226 -39876206 + CT-rich Low_complexity Low_complexity 4 43 0 6 1785 195 69 0 0 chr1 157320052 157320081 -39875351 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1785 252 0 0 0 chr1 157320865 157320893 -39874539 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1785 243 0 0 0 chr1 157320893 157320919 -39874513 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1785 406 245 59 0 chr1 157321284 157321386 -39874046 + PB1D10 SINE Alu 3 110 -7 6 1785 276 369 55 27 chr1 157321802 157322022 -39873410 + LTR16A LTR ERVL 178 403 -48 6 1785 377 283 14 42 chr1 157322099 157322243 -39873189 - MER31A LTR ERV1 -120 365 226 6 1785 345 337 29 11 chr1 157322265 157322439 -39872993 + Lx8 LINE L1 7062 7238 -235 6 1785 673 232 112 19 chr1 157322772 157322987 -39872445 + Lx8 LINE L1 7236 7470 -3 6 1785 544 274 44 32 chr1 157323016 157323174 -39872258 - RSINE1 SINE B4 -2 163 4 6 1785 21 24 0 47 chr1 157323174 157323192 -39872240 + AT_rich Low_complexity Low_complexity 1 18 0 6 1785 823 56 176 0 chr1 157323192 157323317 -39872115 - B1_Mus1 SINE Alu 0 148 2 6 1785 21 24 0 47 chr1 157323317 157323341 -39872091 + AT_rich Low_complexity Low_complexity 1 23 0 6 1785 195 69 0 0 chr1 157323730 157323759 -39871673 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1785 380 83 0 16 chr1 157323776 157323837 -39871595 + B2_Mm2 SINE B2 113 172 -23 6 1785 206 209 24 24 chr1 157323867 157323991 -39871441 + CT-rich Low_complexity Low_complexity 1 124 0 6 1785 603 224 0 31 chr1 157323991 157324120 -39871312 - B1_Mur3 SINE Alu -21 128 4 6 1785 374 132 13 0 chr1 157324523 157324599 -39870833 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1785 309 301 17 58 chr1 157324758 157324878 -39870554 + B4A SINE B4 2 116 -176 6 1785 259 200 0 44 chr1 157324900 157324968 -39870464 + B1F1 SINE Alu 85 149 0 6 1785 494 346 8 0 chr1 157325035 157325162 -39870270 + RSINE1 SINE B4 31 158 -7 6 1785 397 312 0 0 chr1 157325229 157325338 -39870094 - PB1D9 SINE Alu -9 111 3 6 1785 483 261 181 30 chr1 157325372 157325609 -39869823 + B4A SINE B4 1 273 -19 6 1785 220 270 0 0 chr1 157325647 157325710 -39869722 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1785 360 0 0 0 chr1 157326030 157326070 -39869362 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1785 498 260 187 58 chr1 157326104 157326345 -39869087 - B4 SINE B4 -18 274 3 6 1785 1747 165 174 79 chr1 157326461 157326868 -39868564 - RLTR41 LTR ERV1 0 446 1 6 1785 353 240 109 55 chr1 157327042 157327152 -39868280 + PB1D10 SINE Alu 2 117 0 6 1785 1100 197 5 0 chr1 157327161 157327359 -39868073 + B3 SINE B2 5 203 -13 6 1785 253 270 11 11 chr1 157327378 157327422 -39868010 + polypurine Low_complexity Low_complexity 4 47 0 6 1785 1389 61 0 0 chr1 157327422 157327602 -39867830 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1785 253 270 11 11 chr1 157327602 157327647 -39867785 + polypurine Low_complexity Low_complexity 48 92 0 6 1785 551 283 70 42 chr1 157327687 157327901 -39867531 + MLT2B2 LTR ERVL 164 383 -132 6 1785 391 165 24 0 chr1 157327929 157328014 -39867418 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1785 192 200 0 0 chr1 157328705 157328745 -39866687 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1785 351 196 184 10 chr1 157328909 157329007 -39866425 + B1F1 SINE Alu 27 141 -8 6 1785 187 344 127 22 chr1 157330033 157330167 -39865265 + MIRb SINE MIR 46 193 -75 6 1785 654 234 11 80 chr1 157330442 157330618 -39864814 - RSINE1 SINE B4 0 165 2 6 1785 233 325 112 19 chr1 157330962 157331229 -39864203 - L2 LINE L2 -340 3079 2788 6 1785 1799 146 122 42 chr1 157331521 157331929 -39863503 + RLTR11B LTR ERVK 13 453 0 6 1785 357 225 16 8 chr1 157332076 157332197 -39863235 + CT-rich Low_complexity Low_complexity 2 123 0 6 1785 252 280 62 107 chr1 157332200 157332312 -39863120 + MLT1J1 LTR MaLR 36 143 -305 6 1785 243 0 0 0 chr1 157332601 157332628 -39862804 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 6 1785 21 57 0 0 chr1 157332632 157332667 -39862765 + AT_rich Low_complexity Low_complexity 1 35 0 6 1785 273 212 66 66 chr1 157332783 157332874 -39862558 - BC1_Mm scRNA scRNA -48 104 14 6 1785 436 270 43 7 chr1 157332895 157333033 -39862399 - B1F1 SINE Alu 0 149 7 6 1785 1938 274 132 30 chr1 157333731 157334654 -39860778 - L1MC4 LINE L1 -10 8032 7004 6 1785 1297 118 0 26 chr1 157334654 157334846 -39860586 - B2_Mm2 SINE B2 -7 188 2 6 1785 1938 274 132 30 chr1 157334846 157334967 -39860465 - L1MC4 LINE L1 -1039 7003 6881 6 1785 286 254 165 23 chr1 157334974 157335107 -39860325 - MLT1D LTR MaLR -33 472 321 6 1785 364 246 86 43 chr1 157335212 157335352 -39860080 - MLT1D LTR MaLR -359 146 1 6 1785 454 338 42 86 chr1 157335352 157335737 -39859695 - L1MC4 LINE L1 -1059 6823 6456 6 1785 278 258 15 15 chr1 157336459 157336526 -39858906 + CT-rich Low_complexity Low_complexity 4 70 0 6 1785 577 295 60 28 chr1 157337288 157337504 -39857928 - ID_B1 SINE B4 -1 223 1 6 1785 189 255 0 38 chr1 157337514 157337567 -39857865 - MIRb SINE MIR -122 146 96 6 1785 999 25 0 0 chr1 157338189 157338307 -39857125 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 1785 232 370 0 10 chr1 157339023 157339124 -39856308 + L2b LINE L2 3252 3351 -24 6 1785 503 173 0 28 chr1 157339779 157339886 -39855546 - MER5B DNA MER1_type -74 104 1 6 1785 396 239 108 19 chr1 157340192 157340350 -39855082 + MER53 DNA hAT 1 172 -21 6 1785 294 29 0 0 chr1 157340512 157340547 -39854885 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1785 361 206 0 18 chr1 157341420 157341529 -39853903 + GA-rich Low_complexity Low_complexity 3 109 0 6 1785 376 325 100 53 chr1 157342216 157342576 -39852856 - ERVL-B4-int LTR ERVL -3327 2387 2011 6 1785 376 279 104 130 chr1 157342614 157342632 -39852800 - MLT1C LTR MaLR -6 384 367 6 1785 980 106 254 6 chr1 157342632 157342813 -39852619 + URR1A DNA MER1_type 1 226 0 6 1785 470 241 158 76 chr1 157342813 157343179 -39852253 - MLT1C LTR MaLR -24 366 10 6 1785 998 54 0 0 chr1 157343625 157343755 -39851677 + B1_Mm SINE Alu 9 138 -9 6 1785 333 0 0 0 chr1 157343755 157343792 -39851640 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1785 1392 62 0 0 chr1 157343795 157344106 -39851326 + (GAAA)n Simple_repeat Simple_repeat 1 311 0 6 1785 180 0 0 0 chr1 157344910 157344930 -39850502 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1785 456 255 227 13 chr1 157345276 157345505 -39849927 + B4 SINE B4 10 287 -5 6 1785 312 143 0 0 chr1 157345524 157345580 -39849852 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1785 366 216 0 33 chr1 157345834 157345925 -39849507 + PB1D10 SINE Alu 25 112 -5 7 1785 848 180 214 0 chr1 157345949 157346127 -39849305 + B3 SINE B2 1 216 0 7 1785 816 162 29 18 chr1 157346241 157346411 -39849021 + B2_Mm2 SINE B2 20 191 -4 7 1785 1180 55 7 0 chr1 157346411 157346557 -39848875 + B1_Mus1 SINE Alu 1 147 -1 7 1785 30 45 0 0 chr1 157346670 157346714 -39848718 + AT_rich Low_complexity Low_complexity 1 44 0 7 1785 2107 150 78 3 chr1 157346716 157347103 -39848329 + MTC LTR MaLR 1 416 -5 7 1785 296 261 11 0 chr1 157347117 157347205 -39848227 + MER97b DNA MER1_type? 771 859 -194 7 1785 414 0 0 0 chr1 157347349 157347395 -39848037 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 7 1785 443 209 71 18 chr1 157347399 157347511 -39847921 - PB1 SINE Alu -7 120 3 7 1785 261 0 0 0 chr1 157347543 157347572 -39847860 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1785 459 0 0 0 chr1 157347587 157347638 -39847794 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1785 269 286 83 0 chr1 157347642 157347726 -39847706 - PB1D10 SINE Alu -26 91 1 7 1785 381 249 118 0 chr1 157348058 157348184 -39847248 + L1MA5 LINE L1 6159 6301 -11 7 1785 30 27 0 0 chr1 157348184 157348221 -39847211 + AT_rich Low_complexity Low_complexity 1 37 0 7 1785 431 218 129 95 chr1 157348224 157348371 -39847061 - RSINE1 SINE B4 0 165 14 7 1785 26 30 0 0 chr1 157348798 157348831 -39846601 + AT_rich Low_complexity Low_complexity 1 33 0 7 1785 465 266 0 72 chr1 157348834 157348972 -39846460 - B1F SINE Alu -20 129 2 7 1785 244 0 27 27 chr1 157349220 157349257 -39846175 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1785 864 19 0 0 chr1 157349257 157349365 -39846067 - B1_Mus1 SINE Alu -9 139 32 7 1785 1081 104 0 0 chr1 157349365 157349509 -39845923 + B1_Mus1 SINE Alu 5 148 0 7 1785 216 171 0 0 chr1 157349680 157349715 -39845717 + CT-rich Low_complexity Low_complexity 2 36 0 7 1785 265 331 0 90 chr1 157349851 157349984 -39845448 - MIR3 SINE MIR -27 181 61 7 1785 357 125 0 0 chr1 157350409 157350465 -39844967 + (A)n Simple_repeat Simple_repeat 1 56 0 7 1785 386 274 0 34 chr1 157350963 157351080 -39844352 - MER81 DNA AcHobo -1 113 1 7 1785 315 0 0 0 chr1 157351112 157351147 -39844285 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 7 1785 347 278 20 49 chr1 157351211 157351313 -39844119 - ID_B1 SINE B4 -124 100 2 7 1785 198 0 0 0 chr1 157351557 157351579 -39843853 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 7 1785 463 359 28 66 chr1 157352783 157353252 -39842180 - MER21B LTR ERV1 -30 833 383 7 1785 1541 67 0 5 chr1 157353385 157353581 -39841851 - B2_Mm2 SINE B2 0 195 1 7 1785 306 317 8 61 chr1 157353586 157353717 -39841715 - MER21B LTR ERV1 -565 298 175 7 1785 410 0 0 20 chr1 157353725 157353776 -39841656 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1785 450 0 0 0 chr1 157354538 157354588 -39840844 + (CATA)n Simple_repeat Simple_repeat 2 51 0 7 1785 257 309 37 0 chr1 157354588 157354669 -39840763 + B3A SINE B2 1 84 -114 7 1785 380 104 0 15 chr1 157354670 157354738 -39840694 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1785 217 394 0 0 chr1 157355015 157355086 -39840346 + ID SINE ID 3 73 -151 7 1785 421 205 13 0 chr1 157355412 157355490 -39839942 - B3 SINE B2 -100 116 38 7 1785 1756 167 45 53 chr1 157355677 157356051 -39839381 - ORR1C1 LTR MaLR -2 376 6 7 1785 366 145 14 28 chr1 157356418 157356489 -39838943 - ID4_ SINE ID 0 83 14 7 1785 457 271 101 13 chr1 157356534 157356762 -39838670 - L1MC5 LINE L1 -184 7777 7530 7 1785 302 170 49 62 chr1 157357088 157357232 -39838200 + (TATAA)n Simple_repeat Simple_repeat 5 146 0 7 1785 894 125 278 6 chr1 157357782 157357951 -39837481 + B3 SINE B2 1 215 -1 7 1785 735 122 0 0 chr1 157357959 157358090 -39837342 + (TG)n Simple_repeat Simple_repeat 2 132 0 7 1785 314 305 0 0 chr1 157358769 157358851 -39836581 + ID4_ SINE ID 2 83 0 7 1785 964 158 0 0 chr1 157359921 157360067 -39835365 + B1_Mus2 SINE Alu 2 147 0 7 1785 462 188 0 0 chr1 157360106 157360191 -39835241 + B1F SINE Alu 2 86 -63 7 1785 1196 54 0 0 chr1 157360296 157360443 -39834989 + B1_Mm SINE Alu 1 147 0 7 1785 243 0 0 0 chr1 157360443 157360470 -39834962 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1785 818 229 62 0 chr1 157360470 157360649 -39834783 + B3 SINE B2 27 216 0 7 1785 1082 80 0 0 chr1 157360676 157360814 -39834618 + B1_Mm SINE Alu 1 138 -9 7 1785 216 0 0 0 chr1 157360814 157360838 -39834594 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1785 186 43 0 0 chr1 157360845 157360868 -39834564 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1785 483 16 0 0 chr1 157360870 157360932 -39834500 - B1_Mus2 SINE Alu -13 134 73 7 1785 272 328 67 0 chr1 157361193 157361312 -39834120 - MIRc SINE MIR -36 232 106 7 1785 363 248 69 0 chr1 157361535 157361636 -39833796 - MIRb SINE MIR -112 156 49 7 1785 949 120 0 34 chr1 157361676 157361823 -39833609 + B1_Mur4 SINE Alu 2 143 -7 7 1785 1011 140 0 0 chr1 157364022 157364193 -39831239 + (GGAA)n Simple_repeat Simple_repeat 1 171 0 7 1785 563 0 15 0 chr1 157365108 157365175 -39830257 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1785 185 302 0 60 chr1 157365192 157365259 -39830173 + MIR SINE MIR 28 90 -172 7 1785 433 258 70 66 chr1 157365356 157365584 -39829848 - RLTR14 LTR ERV1 0 382 154 7 1785 329 284 0 0 chr1 157365836 157365917 -39829515 + ID4 SINE ID 1 81 -2 7 1785 1344 141 63 20 chr1 157366110 157366363 -39829069 + RMER4B LTR ERVK 1 264 -321 7 1785 1378 226 87 37 chr1 157366358 157366880 -39828552 - RLTR20B3 LTR ERVK -15 562 12 7 1785 1050 170 108 3 chr1 157366875 157367172 -39828260 + RMER4B LTR ERVK 234 585 0 7 1785 447 278 53 0 chr1 157367172 157367291 -39828141 + ID_B1 SINE B4 93 218 -6 7 1785 399 306 78 25 chr1 157367537 157367741 -39827691 - L1ME4a LINE L1 -201 5923 5709 7 1785 2474 237 77 41 chr1 157367957 157368643 -39826789 - RMER1C Other Other 0 1342 632 7 1785 275 323 43 0 chr1 157368693 157368786 -39826646 - RMER1C Other Other -1217 125 29 7 1785 240 213 0 0 chr1 157368899 157368960 -39826472 + (CAG)n Simple_repeat Simple_repeat 3 63 0 7 1785 245 105 0 50 chr1 157369190 157369250 -39826182 + T-rich Low_complexity Low_complexity 4 60 0 7 1785 1171 48 14 0 chr1 157369257 157369403 -39826029 - B1_Mus1 SINE Alu 0 148 1 7 1785 279 182 0 70 chr1 157369443 157369514 -39825918 - B1F2 SINE Alu -82 67 2 7 1785 468 0 0 0 chr1 157369579 157369631 -39825801 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1785 353 311 49 0 chr1 157369632 157369754 -39825678 - RSINE1 SINE B4 -20 145 18 7 1785 216 186 0 0 chr1 157370053 157370096 -39825336 - ID4 SINE ID -40 43 1 7 1785 3206 160 297 24 chr1 157370212 157371011 -39824421 - RMER1B Other Other 0 1066 50 7 1785 207 0 0 0 chr1 157371041 157371064 -39824368 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1785 1242 41 0 0 chr1 157371064 157371211 -39824221 - B1_Mm SINE Alu 0 147 1 7 1785 1218 48 0 0 chr1 157371326 157371472 -39823960 + B1_Mm SINE Alu 1 146 -1 7 1785 212 239 0 0 chr1 157372693 157372739 -39822693 + B4 SINE B4 27 72 -220 7 1785 25 0 0 0 chr1 157372751 157372776 -39822656 + AT_rich Low_complexity Low_complexity 1 25 0 7 1785 818 203 0 0 chr1 157372806 157372944 -39822488 + B1_Mur2 SINE Alu 3 140 -9 7 1785 414 0 0 0 chr1 157372945 157372991 -39822441 + (TAA)n Simple_repeat Simple_repeat 1 46 0 7 1785 336 280 15 99 chr1 157372996 157373127 -39822305 + RSINE1 SINE B4 45 164 -1 7 1785 192 292 130 58 chr1 157373299 157373437 -39821995 - MIRc SINE MIR -38 230 83 7 1785 264 226 0 0 chr1 157373713 157373775 -39821657 + CT-rich Low_complexity Low_complexity 4 65 0 7 1785 673 93 0 18 chr1 157373762 157373871 -39821561 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 7 1785 261 0 0 0 chr1 157375547 157375576 -39819856 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 7 1785 510 321 22 78 chr1 157376007 157376330 -39819102 + LTR85c LTR Gypsy? 319 642 -142 7 1785 188 163 23 0 chr1 157378140 157378183 -39817249 + CT-rich Low_complexity Low_complexity 2 45 0 7 1785 429 301 77 81 chr1 157378861 157379235 -39816197 - MLT1C LTR MaLR -35 432 1 7 1785 545 272 46 108 chr1 157379437 157379833 -39815599 - ORR1E LTR MaLR -1 369 2 7 1785 680 127 23 23 chr1 157381336 157381465 -39813967 + URR1B DNA MER1_type 97 225 0 7 1785 1310 187 204 12 chr1 157381562 157381911 -39813521 - MTD LTR MaLR -14 405 1 7 1785 425 76 0 15 chr1 157382551 157382618 -39812814 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1785 756 200 7 7 chr1 157382947 157383088 -39812344 - B1_Mus1 SINE Alu -7 141 1 7 1785 445 115 13 13 chr1 157383124 157383203 -39812229 + B2_Mm1t SINE B2 101 179 -14 7 1785 213 39 0 0 chr1 157383205 157383231 -39812201 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 7 1785 1118 201 9 5 chr1 157383477 157383687 -39811745 - B3 SINE B2 -4 212 2 7 1785 22 0 0 0 chr1 157383715 157383737 -39811695 + AT_rich Low_complexity Low_complexity 1 22 0 7 1785 1036 88 29 0 chr1 157383737 157383873 -39811559 + B1_Mus1 SINE Alu 1 140 -8 7 1785 216 0 0 0 chr1 157383874 157383898 -39811534 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1785 373 135 180 0 chr1 157384084 157384173 -39811259 + B1_Mur2 SINE Alu 35 139 -10 7 1785 306 0 0 0 chr1 157384173 157384207 -39811225 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1785 503 270 0 0 chr1 157384676 157384787 -39810645 - PB1D10 SINE Alu -5 112 2 8 1785 383 155 274 0 chr1 157385030 157385114 -39810318 - B1_Mus1 SINE Alu 0 120 14 8 1785 800 99 35 7 chr1 157385116 157385258 -39810174 + Lx LINE L1 6509 6654 0 8 1785 281 271 0 0 chr1 157385296 157385366 -39810066 - PB1D10 SINE Alu -8 109 40 8 1785 1814 16 0 1 chr1 157385707 157385937 -39809495 - MT2_Mm LTR ERVL -262 322 1 8 1785 321 0 0 0 chr1 157385937 157385975 -39809457 - MERVL-int LTR ERVL 0 5485 5448 8 1785 362 167 46 35 chr1 157385975 157386062 -39809370 - ORR1A3-int LTR MaLR -1323 640 553 8 1785 33350 18 1 6 chr1 157386062 157390351 -39805081 - MERVL-int LTR ERVL -125 5360 1096 8 1785 1302 20 0 7 chr1 157390351 157390499 -39804933 - B1_Mus2 SINE Alu 0 147 1 8 1785 33350 16 0 9 chr1 157390499 157391201 -39804231 - MERVL-int LTR ERVL -4390 1095 397 8 1785 2446 84 237 29 chr1 157391294 157391749 -39803683 + RLTR6_Mm LTR ERV1 37 586 -68 8 1785 3780 10 0 0 chr1 157391749 157392162 -39803270 - MERVL-int LTR ERVL -5072 413 1 8 1785 254 228 97 11 chr1 157393001 157393094 -39802338 - L2a LINE L2 -214 3212 3112 8 1785 779 198 225 6 chr1 157393481 157393654 -39801778 + B3 SINE B2 2 212 -4 8 1785 23 33 0 0 chr1 157393661 157393691 -39801741 + AT_rich Low_complexity Low_complexity 1 30 0 8 1785 624 256 83 33 chr1 157393733 157393955 -39801477 - ID_B1 SINE B4 -60 232 2 8 1785 1616 62 0 5 chr1 157393961 157394155 -39801277 - B2_Mm2 SINE B2 -2 193 1 8 1785 225 0 0 0 chr1 157394543 157394568 -39800864 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1785 1162 22 72 14 chr1 157394687 157394825 -39800607 - B1_Mm SINE Alu 0 147 2 8 1785 253 43 21 42 chr1 157394927 157394975 -39800457 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1785 180 77 0 0 chr1 157394983 157395009 -39800423 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 1785 686 109 0 9 chr1 157395092 157395203 -39800229 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 8 1785 341 260 10 68 chr1 157395312 157395415 -39800017 + PB1D10 SINE Alu 14 110 -7 8 1785 1058 314 56 42 chr1 157395501 157395734 -39799698 - MER90 LTR ERV1 -65 510 280 8 1785 1382 94 11 22 chr1 157395734 157395919 -39799513 - B2_Mm1t SINE B2 -8 185 3 8 1785 1058 314 56 42 chr1 157395919 157396167 -39799265 - MER90 LTR ERV1 -296 279 19 8 1785 1290 73 0 0 chr1 157396167 157396346 -39799086 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 8 1785 1058 314 56 42 chr1 157396346 157396365 -39799067 - MER90 LTR ERV1 -557 18 2 8 1785 208 162 0 26 chr1 157396365 157396403 -39799029 + CT-rich Low_complexity Low_complexity 2 38 0 8 1785 792 71 0 0 chr1 157396435 157396547 -39798885 + (TTCTC)n Simple_repeat Simple_repeat 2 113 0 8 1785 212 196 0 42 chr1 157396547 157396595 -39798837 - ID4_ SINE ID -3 80 35 8 1785 234 241 0 0 chr1 157396612 157396666 -39798766 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1785 910 249 97 39 chr1 157396672 157396931 -39798501 - B4 SINE B4 0 292 19 8 1785 515 182 0 0 chr1 157396890 157396989 -39798443 - ORR1D1 LTR MaLR -275 99 1 8 1785 728 313 129 2 chr1 157397040 157397434 -39797998 - L1ME3A LINE L1 -204 5969 5526 8 1785 1222 82 0 14 chr1 157397533 157397681 -39797751 - B1_Mus2 SINE Alu 0 147 2 8 1785 585 174 73 0 chr1 157397777 157397886 -39797546 - B3 SINE B2 -98 118 2 8 1785 230 231 92 0 chr1 157398005 157398049 -39797383 - MLT1B LTR MaLR -61 329 280 8 1785 1108 179 30 18 chr1 157398049 157398302 -39797130 - MTD LTR MaLR -1 420 167 8 1785 5254 127 120 162 chr1 157398304 157398571 -39796861 - RMER12 LTR ERVK -20 1302 1013 8 1785 423 0 0 0 chr1 157398571 157398618 -39796814 + (GAAAA)n Simple_repeat Simple_repeat 5 51 0 8 1785 468 0 0 0 chr1 157398626 157398678 -39796754 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1785 5254 127 120 162 chr1 157398678 157398907 -39796525 - RMER12 LTR ERVK -433 889 697 8 1785 1173 62 14 7 chr1 157398907 157399052 -39796380 - B1_Mus2 SINE Alu 0 147 2 8 1785 5254 127 120 162 chr1 157399052 157399144 -39796288 - RMER12 LTR ERVK -626 696 639 8 1785 1329 96 11 6 chr1 157399144 157399322 -39796110 + B2_Mm1t SINE B2 1 179 -14 8 1785 5254 127 120 162 chr1 157399322 157400081 -39795351 - RMER12 LTR ERVK -684 638 2 8 1785 479 235 0 65 chr1 157400081 157400163 -39795269 - MTD LTR MaLR -238 181 108 8 1785 3498 136 155 21 chr1 157400169 157400835 -39794597 + RMER6A LTR ERVK 2 756 0 8 1785 577 158 10 0 chr1 157400835 157400922 -39794510 - MTD LTR MaLR -317 102 15 8 1785 270 81 0 0 chr1 157400922 157400959 -39794473 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 8 1785 577 158 10 0 chr1 157400959 157400972 -39794460 - MTD LTR MaLR -405 14 2 8 1785 410 323 25 72 chr1 157401092 157401369 -39794063 - RLTR12B LTR ERVK -24 504 241 8 1785 560 274 72 112 chr1 157401342 157401646 -39793786 - RLTR11A2 LTR ERVK -153 292 1 8 1785 508 175 85 28 chr1 157401905 157402011 -39793421 + PB1D9 SINE Alu 1 112 -8 8 1785 21 36 0 0 chr1 157402012 157402040 -39793392 + AT_rich Low_complexity Low_complexity 1 28 0 8 1785 262 318 136 0 chr1 157402156 157402266 -39793166 + MIRb SINE MIR 67 191 -77 8 1785 1024 265 5 0 chr1 157402278 157402493 -39792939 + B3 SINE B2 1 216 0 8 1785 869 156 49 7 chr1 157402516 157402658 -39792774 + B1_Mus1 SINE Alu 1 148 0 8 1785 599 100 33 11 chr1 157402705 157402796 -39792636 + B2_Mm2 SINE B2 91 183 -12 8 1785 599 0 0 14 chr1 157402796 157402868 -39792564 + (GA)n Simple_repeat Simple_repeat 2 72 0 8 1785 1957 124 24 127 chr1 157403236 157403615 -39791817 - ORR1B2 LTR MaLR -25 342 3 8 1785 1485 153 100 21 chr1 157403932 157403959 -39791473 - RMER5 LTR ERV1 0 534 513 8 1785 2354 131 53 6 chr1 157403959 157404320 -39791112 - ORR1C1 LTR MaLR 0 378 1 8 1785 1485 153 100 21 chr1 157404320 157404572 -39790860 - RMER5 LTR ERV1 -22 512 233 8 1785 216 111 0 0 chr1 157404572 157404608 -39790824 + (CTA)n Simple_repeat Simple_repeat 1 36 0 8 1785 531 0 0 0 chr1 157404614 157404673 -39790759 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1785 188 286 11 87 chr1 157406757 157406849 -39788583 - L2c LINE L2 -51 3336 3252 8 1785 641 220 0 45 chr1 157407045 157407178 -39788254 - RSINE1 SINE B4 -29 136 10 8 1785 1727 282 134 23 chr1 157407286 157407298 -39788134 + Charlie1a DNA MER1_type 346 357 -1098 8 1785 449 250 118 22 chr1 157407298 157407433 -39787999 + B1F2 SINE Alu 2 149 0 8 1785 1727 282 134 23 chr1 157407433 157407545 -39787887 + Charlie1a DNA MER1_type 358 472 -983 8 1785 1013 143 29 73 chr1 157407545 157407749 -39787683 - B2_Mm2 SINE B2 0 195 1 8 1785 1727 282 134 23 chr1 157407749 157408505 -39786927 + Charlie1a DNA MER1_type 473 1325 -130 8 1785 437 321 15 0 chr1 157408542 157408679 -39786753 - B4A SINE B4 -2 290 152 8 1785 309 250 106 9 chr1 157409024 157409137 -39786295 + Charlie1a DNA MER1_type 1331 1454 -1 8 1785 231 61 0 0 chr1 157409254 157409287 -39786145 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1785 619 205 34 8 chr1 157409308 157409426 -39786006 - RSINE1 SINE B4 -36 129 9 8 1785 805 254 0 6 chr1 157409458 157409628 -39785804 - B3 SINE B2 -44 172 4 8 1785 245 275 51 68 chr1 157409788 157409905 -39785527 + Charlie11 DNA MER1_type 360 474 -1722 8 1785 775 196 103 27 chr1 157410060 157410244 -39785188 - B3A SINE B2 0 198 1 8 1785 371 321 46 0 chr1 157410393 157410502 -39784930 + PB1D10 SINE Alu 1 114 -3 8 1785 279 0 0 0 chr1 157410614 157410645 -39784787 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 8 1785 324 0 0 0 chr1 157410674 157410710 -39784722 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1785 875 172 0 7 chr1 157410815 157410950 -39784482 - B1_Mus2 SINE Alu -13 134 1 8 1785 310 262 100 62 chr1 157411105 157411235 -39784197 + RSINE1 SINE B4 2 136 -29 8 1785 268 276 35 118 chr1 157411426 157411550 -39783882 - B1_Mur1 SINE Alu -13 136 3 8 1785 993 215 48 10 chr1 157412742 157412949 -39782483 - B3 SINE B2 0 216 2 8 1785 182 37 0 36 chr1 157413145 157413173 -39782259 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1785 858 163 0 0 chr1 157413173 157413301 -39782131 - B1_Mus2 SINE Alu -8 139 12 8 1785 486 262 22 104 chr1 157413301 157413356 -39782076 - ID_B1 SINE B4 -9 215 48 8 1785 198 0 0 0 chr1 157413513 157413535 -39781897 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1785 408 260 33 107 chr1 157413612 157413902 -39781530 + L1MC4 LINE L1 7337 7592 -450 8 1785 231 267 16 32 chr1 157414586 157414648 -39780784 + PB1D10 SINE Alu 60 136 -13 8 1785 856 238 26 21 chr1 157415107 157415296 -39780136 + B3A SINE B2 2 191 -7 8 1785 607 115 112 28 chr1 157415301 157415408 -39780024 + B1_Mus1 SINE Alu 33 148 0 8 1785 1546 23 63 0 chr1 157415885 157416059 -39779373 + B2_Mm1a SINE B2 2 186 -7 8 1785 619 286 6 13 chr1 157416069 157416225 -39779207 - RSINE1 SINE B4 -10 155 1 8 1785 565 252 123 41 chr1 157416245 157416415 -39779017 - B3 SINE B2 -7 209 26 8 1785 29 0 0 0 chr1 157416415 157416444 -39778988 + AT_rich Low_complexity Low_complexity 1 29 0 8 1785 697 142 58 0 chr1 157416539 157416659 -39778773 + B1_Mus1 SINE Alu 22 148 0 8 1785 305 241 24 60 chr1 157417036 157417120 -39778312 + ID4_ SINE ID 3 83 0 8 1785 1574 44 22 0 chr1 157417176 157417356 -39778076 - B2_Mm1a SINE B2 -7 186 3 8 223 303 272 98 6 chr1 157417388 157417518 -39777914 - MIR SINE MIR -35 233 86 8 1786 1183 108 36 42 chr1 157417545 157417738 -39777694 + B2_Mm2 SINE B2 4 195 0 8 1786 665 135 188 16 chr1 157418214 157418342 -39777090 - B1_Mur4 SINE Alu 0 150 1 8 1786 1273 254 110 105 chr1 157418344 157419060 -39776372 - L1MC4 LINE L1 -139 7903 7184 8 1786 1944 151 118 8 chr1 157419098 157419472 -39775960 + MTC LTR MaLR 7 421 0 8 1786 247 104 42 0 chr1 157419490 157419538 -39775894 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 8 1786 612 264 167 39 chr1 157419565 157419972 -39775460 - LTR40c LTR ERVL -4 461 3 8 1786 258 253 76 0 chr1 157420040 157420119 -39775313 - L1MC4 LINE L1 -946 6936 6852 8 1786 387 222 244 6 chr1 157420123 157420295 -39775137 - MLT1C LTR MaLR -2 465 253 8 1786 1459 236 72 11 chr1 157420300 157420680 -39774752 - MTD LTR MaLR -16 403 8 8 1786 700 201 35 28 chr1 157420846 157420989 -39774443 - B1_Mus1 SINE Alu 0 148 5 8 1786 471 300 174 22 chr1 157421581 157422025 -39773407 - L2a LINE L2 -52 3374 2857 8 1786 421 190 13 0 chr1 157423560 157423639 -39771793 + ID4 SINE ID 2 81 -2 8 1786 36 23 0 0 chr1 157424802 157424845 -39770587 + AT_rich Low_complexity Low_complexity 1 43 0 9 1786 698 207 25 0 chr1 157425291 157425412 -39770020 - B1_Mur3 SINE Alu -25 124 1 9 1786 22 35 0 0 chr1 157425473 157425502 -39769930 + AT_rich Low_complexity Low_complexity 1 29 0 9 1786 282 306 0 0 chr1 157426320 157426392 -39769040 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 9 1786 627 236 34 34 chr1 157427181 157427330 -39768102 - B1_Mur2 SINE Alu 0 149 1 9 1786 421 223 87 0 chr1 157428359 157428462 -39766970 - PB1D10 SINE Alu -5 112 1 9 1786 258 32 0 0 chr1 157428777 157428808 -39766624 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1786 470 278 96 37 chr1 157429991 157430178 -39765254 - B3A SINE B2 0 198 1 9 1786 1403 57 91 0 chr1 157430344 157430519 -39764913 + B2_Mm2 SINE B2 1 191 -4 9 1786 325 349 11 45 chr1 157431506 157431683 -39763749 + LTR16D LTR ERVL 480 650 -1 9 1786 208 119 0 45 chr1 157432011 157432055 -39763377 + T-rich Low_complexity Low_complexity 2 43 0 9 1786 288 0 0 0 chr1 157432271 157432303 -39763129 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1786 272 277 15 0 chr1 157432402 157432467 -39762965 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 9 1786 180 176 0 0 chr1 157432708 157432742 -39762690 + CT-rich Low_complexity Low_complexity 2 35 0 9 1786 392 232 11 0 chr1 157432746 157432841 -39762591 - L1M5 LINE L1 -392 5732 5637 9 1786 246 356 141 0 chr1 157433205 157433340 -39762092 + L2b LINE L2 3215 3368 -7 9 1786 479 268 105 26 chr1 157434011 157434164 -39761268 - RSINE1 SINE B4 0 165 1 9 1786 27 49 0 0 chr1 157434203 157434244 -39761188 + AT_rich Low_complexity Low_complexity 1 41 0 9 1786 1621 241 86 33 chr1 157434570 157435059 -39760373 + RMER20A LTR ERVK 1 515 -1 9 1786 1085 114 42 0 chr1 157435463 157435630 -39759802 + L1_Mus4 LINE L1 6463 6636 0 9 1786 252 118 29 14 chr1 157436198 157436267 -39759165 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 9 1786 398 239 148 0 chr1 157436360 157436448 -39758984 - B3 SINE B2 -89 127 27 9 1786 514 185 59 48 chr1 157436443 157436605 -39758827 - B3 SINE B2 -4 191 35 9 1786 1292 41 7 0 chr1 157437058 157437204 -39758228 + B1_Mus2 SINE Alu 1 147 0 9 1786 1134 241 65 4 chr1 157437942 157438204 -39757228 - B4 SINE B4 -8 284 7 9 1786 336 206 179 103 chr1 157438204 157438298 -39757134 - L1M4 LINE L1 -368 5816 5720 9 1786 711 235 117 5 chr1 157438298 157438486 -39756946 - B3 SINE B2 -6 210 2 9 1786 336 206 179 103 chr1 157438486 157438575 -39756857 - L1M4 LINE L1 -465 5719 5619 9 1786 250 239 43 21 chr1 157438601 157438695 -39756737 + Ricksha DNA MuDR 88 183 -3063 9 1786 663 172 30 25 chr1 157438749 157438888 -39756544 + B1F SINE Alu 1 137 -12 9 1786 525 228 13 70 chr1 157438888 157438900 -39756532 + ID_B1 SINE B4 83 224 0 9 1786 2476 250 84 30 chr1 157439025 157439813 -39755619 + Ricksha DNA MuDR 1444 2273 -973 9 1786 1339 261 39 3 chr1 157439892 157440276 -39755156 + Ricksha DNA MuDR 2431 2828 -418 9 1786 480 261 107 47 chr1 157440297 157440446 -39754986 - B3 SINE B2 -11 205 48 9 1786 2767 196 38 22 chr1 157440458 157441036 -39754396 - Lx5 LINE L1 -1 7049 6463 9 1786 290 271 0 0 chr1 157441036 157441095 -39754337 - B3A SINE B2 -135 63 5 9 1786 201 74 0 0 chr1 157441158 157441185 -39754247 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 9 1786 1937 241 69 73 chr1 157441234 157441969 -39753463 + MTD-int LTR MaLR 527 1258 0 9 1786 1895 171 119 11 chr1 157441969 157442347 -39753085 + MTD LTR MaLR 1 419 0 9 1786 308 296 52 7 chr1 157442350 157442486 -39752946 + L1M5 LINE L1 3351 3492 -2654 9 1786 228 259 121 0 chr1 157442727 157442785 -39752647 - PB1D10 SINE Alu -20 97 33 9 1786 353 321 142 7 chr1 157442737 157442878 -39752554 - ID_B1 SINE B4 -63 161 2 9 1786 194 298 161 34 chr1 157442941 157443071 -39752361 + MIRb SINE MIR 4 147 -129 9 1786 253 301 14 0 chr1 157443267 157443340 -39752092 - L1M5 LINE L1 -2527 3619 3546 9 1786 244 340 72 0 chr1 157444069 157444166 -39751266 - RSINE1 SINE B4 0 165 62 9 1786 930 214 135 8 chr1 157444769 157445014 -39750418 - ORR1C2 LTR MaLR 0 384 109 9 1786 271 228 106 38 chr1 157445485 157445617 -39749815 + L1MEc LINE L1 1339 1479 -4921 9 1786 776 257 81 62 chr1 157445767 157446070 -39749362 - L1_Rod LINE L1 -4435 1412 1081 9 1786 4502 56 8 34 chr1 157446070 157446680 -39748752 + L1_Mus2 LINE L1 5972 6565 -1 9 1786 776 251 85 76 chr1 157446680 157446881 -39748551 - L1_Rod LINE L1 -6528 1080 896 9 1786 295 303 64 6 chr1 157447151 157447363 -39748069 + L1MEc LINE L1 4174 4404 -1915 9 1786 225 222 0 0 chr1 157447586 157447640 -39747792 + L1MEc LINE L1 5523 5576 -2592 9 1786 1276 93 6 0 chr1 157447722 157447894 -39747538 + B2_Mm1t SINE B2 2 174 -19 9 1786 252 286 54 31 chr1 157447922 157448052 -39747380 - L1M4 LINE L1 -1915 4231 4099 9 1786 857 237 0 0 chr1 157448078 157448234 -39747198 - B3 SINE B2 -59 157 2 9 1786 359 148 0 7 chr1 157448369 157448433 -39746999 + PB1D7 SINE Alu 14 74 -75 9 1786 258 273 0 38 chr1 157448787 157448867 -39746565 + CT-rich Low_complexity Low_complexity 3 79 0 9 1786 426 65 0 0 chr1 157448871 157448933 -39746499 + (TCTCTG)n Simple_repeat Simple_repeat 4 65 0 9 1786 601 189 0 26 chr1 157448933 157449047 -39746385 - B1_Mus1 SINE Alu -30 118 8 9 1786 350 291 49 63 chr1 157448937 157449080 -39746352 - B4 SINE B4 -88 204 64 9 1786 879 158 0 0 chr1 157449950 157450083 -39745349 - B1_Mus2 SINE Alu -10 137 5 9 1786 454 142 84 32 chr1 157450217 157450341 -39745091 - B1_Mur2 SINE Alu -6 143 2 9 1786 644 206 8 45 chr1 157450373 157450505 -39744927 - ID_B1 SINE B4 -5 219 93 9 1786 309 202 0 126 chr1 157450763 157450882 -39744550 + (GTATG)n Simple_repeat Simple_repeat 3 106 0 9 1786 241 300 98 18 chr1 157451356 157451468 -39743964 + MIR SINE MIR 128 248 -14 9 1786 668 207 243 0 chr1 157453571 157453740 -39741692 + B3 SINE B2 1 210 -6 9 1786 272 239 42 56 chr1 157453934 157454005 -39741427 - PB1D10 SINE Alu -9 108 39 9 1786 309 355 78 39 chr1 157454022 157454201 -39741231 - MIRb SINE MIR -1 267 82 9 1786 3539 94 108 2 chr1 157454360 157454906 -39740526 - L1_Mus3 LINE L1 -2 6636 6033 9 1786 180 0 0 0 chr1 157455805 157455825 -39739607 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 9 1786 24 32 0 0 chr1 157456043 157456074 -39739358 + AT_rich Low_complexity Low_complexity 1 31 0 9 1786 1552 279 77 63 chr1 157456139 157456548 -39738884 - L1MA7 LINE L1 0 6291 5872 9 1786 1224 208 60 76 chr1 157456548 157456928 -39738504 - ORR1D1 LTR MaLR 0 374 1 9 1786 1552 279 77 63 chr1 157456928 157457539 -39737893 - L1MA7 LINE L1 -420 5871 5256 9 1786 7408 49 18 9 chr1 157457809 157458861 -39736571 + L1_Mus1 LINE L1 5510 6653 -1 9 1786 523 206 110 40 chr1 157459057 157459285 -39736147 - Charlie2b DNA MER1_type -393 2389 2146 9 1786 384 239 0 0 chr1 157459956 157460023 -39735409 + PB1D10 SINE Alu 38 104 -13 9 1786 737 182 49 7 chr1 157461349 157461493 -39733939 + B1_Mur4 SINE Alu 1 150 0 9 1786 882 213 54 15 chr1 157461657 157461862 -39733570 - B3 SINE B2 0 216 4 9 1786 24 32 0 0 chr1 157461956 157461987 -39733445 + AT_rich Low_complexity Low_complexity 1 31 0 9 1786 610 272 70 75 chr1 157462005 157462204 -39733228 - B3A SINE B2 0 198 1 9 1786 182 281 0 17 chr1 157462216 157462274 -39733158 + MIR SINE MIR 64 120 -142 9 1786 470 263 211 4 chr1 157462302 157462539 -39732893 + B4A SINE B4 3 288 -4 9 1786 237 250 17 0 chr1 157464621 157464681 -39730751 - MLT1J2 LTR MaLR -288 160 100 9 1786 440 342 74 35 chr1 157464895 157465098 -39730334 - HAL1 LINE L1 -581 1926 1716 9 1786 198 103 0 0 chr1 157465368 157465397 -39730035 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 9 1786 26 30 0 0 chr1 157466244 157466277 -39729155 + AT_rich Low_complexity Low_complexity 1 33 0 9 1786 24 0 0 0 chr1 157466464 157466488 -39728944 + AT_rich Low_complexity Low_complexity 1 24 0 9 1786 718 272 7 45 chr1 157466986 157467207 -39728225 - B3A SINE B2 -4 212 1 9 1786 1892 111 74 3 chr1 157467453 157467751 -39727681 - ORR1A2 LTR MaLR -8 319 1 9 1786 60 73 0 0 chr1 157468528 157468651 -39726781 + AT_rich Low_complexity Low_complexity 1 123 0 9 1786 560 211 109 0 chr1 157470831 157470959 -39724473 - B1_Mur2 SINE Alu -7 142 1 9 1786 22 0 0 0 chr1 157471560 157471582 -39723850 + AT_rich Low_complexity Low_complexity 1 22 0 9 1786 291 314 14 0 chr1 157471645 157471715 -39723717 - RSINE1 SINE B4 -91 74 4 9 1786 198 349 27 45 chr1 157471762 157471873 -39723559 - MIRc SINE MIR -148 120 12 9 1786 733 153 237 17 chr1 157472141 157472314 -39723118 - B3 SINE B2 -4 212 2 9 1786 357 24 0 0 chr1 157472330 157472372 -39723060 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1786 882 123 56 82 chr1 157472618 157472813 -39722619 - B2_Mm2 SINE B2 -5 190 1 9 1786 378 279 39 64 chr1 157472814 157473048 -39722384 - L1MB5 LINE L1 -346 5828 5601 9 1786 848 226 52 42 chr1 157473058 157473271 -39722161 - B3 SINE B2 0 216 2 9 1786 575 144 239 18 chr1 157473531 157473644 -39721788 - B1_Mur3 SINE Alu -11 138 1 9 1786 1303 105 16 5 chr1 157474295 157474487 -39720945 - B2_Mm2 SINE B2 0 195 2 9 1786 458 330 129 19 chr1 157475290 157475500 -39719932 + B4A SINE B4 37 269 -23 9 1786 570 98 0 0 chr1 157475500 157475582 -39719850 + (CA)n Simple_repeat Simple_repeat 2 83 0 9 1786 21 36 0 0 chr1 157475755 157475783 -39719649 + AT_rich Low_complexity Low_complexity 1 28 0 9 1786 466 285 131 88 chr1 157476543 157476745 -39718687 + Kanga1 DNA Tc2 1 222 -1523 9 1786 716 220 56 51 chr1 157476745 157476941 -39718491 + B3A SINE B2 1 197 -1 9 1786 466 285 131 88 chr1 157476941 157477111 -39718321 + Kanga1 DNA Tc2 223 389 -1356 9 1786 326 192 55 0 chr1 157477186 157477259 -39718173 + MTD LTR MaLR 343 419 0 9 1786 2718 222 134 102 chr1 157477259 157478256 -39717176 + MTD-int LTR MaLR 1 1065 -193 9 1786 866 201 50 10 chr1 157478256 157478457 -39716975 - B3 SINE B2 -3 213 5 9 1786 2718 222 134 102 chr1 157478457 157478678 -39716754 + MTD-int LTR MaLR 1066 1258 0 9 1786 657 194 58 22 chr1 157478739 157478876 -39716556 - B1_Mm SINE Alu 0 147 6 1 1786 886 241 226 15 chr1 157478878 157479139 -39716293 + MTD LTR MaLR 104 419 0 1 1786 183 80 0 0 chr1 157479200 157479225 -39716207 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 1786 727 233 32 26 chr1 157479227 157479381 -39716051 - B3A SINE B2 -42 156 2 1 1786 770 253 0 38 chr1 157479409 157479569 -39715863 - RSINE1 SINE B4 0 165 12 1 1786 821 291 70 25 chr1 157479666 157480065 -39715367 - L1MC4a LINE L1 -2004 5878 5462 1 1786 346 269 146 58 chr1 157480083 157480288 -39715144 - L1MC4a LINE L1 -2405 5477 5255 1 1786 776 220 14 0 chr1 157480443 157480584 -39714848 + B1_Mur2 SINE Alu 2 144 -5 1 1786 346 271 128 19 chr1 157480858 157481069 -39714363 - L1M5 LINE L1 -1375 4771 4538 1 1786 745 209 0 0 chr1 157482368 157482497 -39712935 + B1_Mur1 SINE Alu 12 140 -9 1 1786 1272 66 0 0 chr1 157482498 157482665 -39712767 + (GAA)n Simple_repeat Simple_repeat 2 168 0 1 1786 792 216 94 5 chr1 157482672 157482863 -39712569 + B3 SINE B2 1 208 -8 1 1786 678 196 125 7 chr1 157484465 157484609 -39710823 - B3A SINE B2 -37 161 1 1 1786 801 219 202 0 chr1 157484944 157485122 -39710310 + B3 SINE B2 3 216 0 1 1786 430 289 35 86 chr1 157486240 157486414 -39709018 - B4A SINE B4 0 292 128 1 1786 23 0 0 0 chr1 157486859 157486882 -39708550 + AT_rich Low_complexity Low_complexity 1 23 0 1 1786 13263 89 14 10 chr1 157487035 157490001 -39705431 - L1VL2 LINE L1 -627 2988 12 1 1786 345 47 0 0 chr1 157490249 157490292 -39705140 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1786 644 259 92 82 chr1 157490328 157490610 -39704822 - B4 SINE B4 -7 285 1 1 1786 484 204 17 42 chr1 157490618 157490629 -39704803 - PB1D9 SINE Alu -5 115 108 1 1786 460 0 0 32 chr1 157490629 157490691 -39704741 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 1 1786 484 204 17 42 chr1 157490691 157490797 -39704635 - PB1D9 SINE Alu -13 107 1 1 1786 362 338 33 53 chr1 157491121 157491271 -39704161 + MER115 DNA Tip100 262 408 -285 1 1786 241 314 110 10 chr1 157492383 157492592 -39702840 + MER102c DNA MER1_type 71 300 -31 1 1786 230 361 139 23 chr1 157492696 157493005 -39702427 - L3 LINE CR1 -12 4477 4133 1 1786 288 0 0 0 chr1 157493361 157493393 -39702039 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1786 282 273 0 15 chr1 157494361 157494428 -39701004 - PB1D9 SINE Alu -34 86 21 1 1786 182 250 35 35 chr1 157496230 157496288 -39699144 - MER5A DNA MER1_type -79 110 53 1 1786 299 232 49 14 chr1 157496380 157496524 -39698908 - Lx9 LINE L1 -8 7636 7488 1 1786 533 266 248 22 chr1 157498127 157498495 -39696937 + Lx8 LINE L1 6967 7417 -56 1 1786 619 284 73 11 chr1 157498673 157498851 -39696581 - B3A SINE B2 -1 197 9 1 1786 275 329 91 21 chr1 157499305 157499448 -39695984 - RSINE1 SINE B4 -12 153 1 1 1786 222 333 78 48 chr1 157499663 157499846 -39695586 + MIRc SINE MIR 36 229 -39 1 1786 450 256 111 0 chr1 157500006 157500123 -39695309 - RSINE1 SINE B4 -34 131 2 1 1786 835 273 123 8 chr1 157500760 157501004 -39694428 + B4A SINE B4 3 274 -18 2 1786 307 279 190 25 chr1 157501204 157501362 -39694070 + MIRb SINE MIR 16 199 -69 3 1786 30 0 0 0 chr1 157502753 157502783 -39692649 + AT_rich Low_complexity Low_complexity 1 30 0 4 1786 23 33 0 0 chr1 157502800 157502830 -39692602 + AT_rich Low_complexity Low_complexity 1 30 0 5 1786 1227 41 0 0 chr1 157503847 157503993 -39691439 - B1_Mus2 SINE Alu 0 147 2 6 1786 1163 225 86 11 chr1 157505170 157505530 -39689902 - Lx8 LINE L1 -1 7643 7257 7 1786 2000 260 124 17 chr1 157505579 157507034 -39688398 - Lx8 LINE L1 -466 7178 5377 7 1786 1131 183 64 0 chr1 157507070 157507272 -39688160 + B3 SINE B2 1 215 -1 8 1786 188 311 13 39 chr1 157507583 157507660 -39687772 - L2c LINE L2 -37 3350 3276 9 1786 675 0 0 0 chr1 157507982 157508057 -39687375 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1786 286 278 152 0 chr1 157508061 157508212 -39687220 - MLT1C LTR MaLR -56 411 238 1 1786 23 0 0 0 chr1 157509220 157509243 -39686189 + AT_rich Low_complexity Low_complexity 1 23 0 1 1786 194 91 30 0 chr1 157509923 157509956 -39685476 + (GGGGA)n Simple_repeat Simple_repeat 2 35 0 1 1786 181 211 77 0 chr1 157510317 157510369 -39685063 - L2a LINE L2 0 3426 3371 1 1786 200 270 14 0 chr1 157510751 157510825 -39684607 + T-rich Low_complexity Low_complexity 2 76 0 1 1786 2524 270 54 25 chr1 157510827 157511591 -39683841 - Lx9 LINE L1 -458 7186 6401 1 1786 333 62 0 0 chr1 157511591 157511639 -39683793 + (TTTTG)n Simple_repeat Simple_repeat 5 52 0 1 1786 25 65 0 0 chr1 157514201 157514247 -39681185 + AT_rich Low_complexity Low_complexity 1 46 0 1 1786 694 228 91 37 chr1 157514420 157514607 -39680825 + B3A SINE B2 1 197 -1 1 1786 9537 103 26 43 chr1 157514609 157514699 -39680733 - L1_Mur1 LINE L1 -876 5010 4931 2 1786 213 65 0 0 chr1 157514699 157514730 -39680702 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1786 9537 103 26 43 chr1 157514730 157516186 -39679246 - L1_Mur1 LINE L1 -956 4930 3490 2 1786 237 139 0 0 chr1 157516489 157516532 -39678900 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1786 522 279 8 0 chr1 157516583 157516712 -39678720 + RSINE1 SINE B4 36 165 0 2 1786 486 241 56 4 chr1 157516759 157516933 -39678499 - L1MA4A LINE L1 -377 5923 5731 2 1786 1061 172 76 5 chr1 157517106 157517316 -39678116 + URR1A DNA MER1_type 1 225 -1 2 1786 302 365 44 19 chr1 157517414 157517573 -39677859 - LTR87 LTR ERVL? -75 549 387 2 1786 1350 98 16 0 chr1 157517593 157517777 -39677655 + B2_Mm2 SINE B2 1 187 -8 2 1786 1081 183 30 0 chr1 157517795 157517997 -39677435 - B3 SINE B2 -8 208 1 2 1786 643 152 19 0 chr1 157519710 157519815 -39675617 + B1_Mur2 SINE Alu 30 136 -13 2 1786 682 223 7 0 chr1 157520500 157520639 -39674793 - ID_B1 SINE B4 -3 221 82 3 1786 534 247 57 19 chr1 157520639 157520796 -39674636 - L1MB3 LINE L1 -32 6151 5989 3 1786 552 68 0 0 chr1 157521093 157521166 -39674266 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1786 2379 128 40 12 chr1 157521171 157521573 -39673859 + MTC LTR MaLR 1 413 -8 3 1786 741 127 22 29 chr1 157521764 157521902 -39673530 - B1_Mur1 SINE Alu -8 141 5 3 1786 592 297 22 0 chr1 157521908 157522046 -39673386 - B1F1 SINE Alu -8 141 1 3 1786 504 294 73 58 chr1 157522394 157522723 -39672709 - ORR1D2 LTR MaLR -32 338 5 3 1786 450 0 0 0 chr1 157523433 157523483 -39671949 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 1786 1254 25 0 6 chr1 157523483 157523644 -39671788 - B2_Mm1a SINE B2 -33 160 1 3 1786 1353 80 0 0 chr1 157523871 157524046 -39671386 + B2_Mm2 SINE B2 2 176 -19 3 1786 504 267 306 9 chr1 157524601 157524820 -39670612 + B4A SINE B4 1 284 -8 4 1786 901 281 48 41 chr1 157524881 157525174 -39670258 + MER44B DNA MER2_type 11 305 -245 4 1786 490 118 21 0 chr1 157525328 157525421 -39670011 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 1786 248 0 31 0 chr1 157525433 157525465 -39669967 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1786 21 57 0 0 chr1 157525727 157525762 -39669670 + AT_rich Low_complexity Low_complexity 1 35 0 4 1786 471 305 63 40 chr1 157526027 157526328 -39669104 + L1M5 LINE L1 3635 3942 -2204 4 1786 531 220 59 0 chr1 157527156 157527274 -39668158 - B1F SINE Alu -7 142 18 4 1786 214 250 61 24 chr1 157527741 157527823 -39667609 - MIRb SINE MIR 0 268 184 4 1786 22 0 0 0 chr1 157528535 157528557 -39666875 + AT_rich Low_complexity Low_complexity 1 22 0 4 1786 207 0 0 0 chr1 157529003 157529026 -39666406 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 1786 3261 51 5 2 chr1 157530193 157530588 -39664844 - MTA_Mm LTR MaLR 0 396 1 5 1786 240 274 73 81 chr1 157531482 157531605 -39663827 + MT2B LTR ERVL 136 257 -344 5 1786 588 239 22 0 chr1 157531508 157531642 -39663790 + B1_Mur2 SINE Alu 5 141 -8 5 1786 350 328 69 97 chr1 157531957 157532087 -39663345 - L1ME3B LINE L1 -107 6133 6019 5 1786 568 201 112 0 chr1 157532087 157532221 -39663211 - B1F2 SINE Alu 0 149 1 5 1786 350 328 69 97 chr1 157532221 157532697 -39662735 - L1ME3B LINE L1 -222 6018 5544 5 1786 597 152 0 0 chr1 157532745 157532850 -39662582 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1786 681 254 187 4 chr1 157533151 157533392 -39662040 + B4A SINE B4 1 285 -7 5 1786 1111 96 0 7 chr1 157533447 157533594 -39661838 + B1_Mus1 SINE Alu 3 148 0 5 1786 351 0 0 0 chr1 157533668 157533707 -39661725 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1786 582 15 0 0 chr1 157534563 157534630 -39660802 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1786 1373 70 46 14 chr1 157534815 157535016 -39660416 + L1_Mus3 LINE L1 6415 6622 -16 6 1786 1227 35 0 14 chr1 157535016 157535162 -39660270 + B1_Mus1 SINE Alu 5 148 0 6 1786 1373 70 46 14 chr1 157535162 157535177 -39660255 + L1_Mus3 LINE L1 6623 6637 -1 6 1786 198 0 0 0 chr1 157536846 157536868 -39658564 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1786 239 290 0 0 chr1 157536876 157536938 -39658494 - ID4_ SINE ID -13 70 9 6 1786 195 42 0 0 chr1 157537312 157537336 -39658096 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1786 207 258 62 25 chr1 157538938 157539040 -39656392 - MIRc SINE MIR -73 189 86 6 1786 414 0 0 0 chr1 157539080 157539126 -39656306 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1786 327 263 81 0 chr1 157539878 157539977 -39655455 + PB1D10 SINE Alu 10 116 -1 6 1786 264 213 0 0 chr1 157541207 157541268 -39654164 + (TAA)n Simple_repeat Simple_repeat 1 61 0 6 1786 555 310 0 48 chr1 157541270 157541436 -39653996 + RSINE1 SINE B4 7 164 -1 6 1786 1068 97 14 0 chr1 157541480 157541625 -39653807 + B1_Mur3 SINE Alu 1 147 -2 7 1786 1221 80 45 6 chr1 157541630 157541806 -39653626 + B2_Mm2 SINE B2 2 184 -11 7 1786 222 37 0 0 chr1 157542541 157542568 -39652864 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 7 1786 462 218 136 0 chr1 157542568 157542678 -39652754 - ID_B1 SINE B4 -13 211 87 7 1786 555 107 0 0 chr1 157542899 157542983 -39652449 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1786 370 304 146 0 chr1 157543027 157543198 -39652234 - B4A SINE B4 -95 197 2 7 1786 267 203 34 0 chr1 157543276 157543335 -39652097 - B1_Mur2 SINE Alu -2 147 87 7 1786 339 285 158 22 chr1 157543918 157544101 -39651331 + MER3 DNA MER1_type 2 209 0 7 1786 788 243 45 17 chr1 157544270 157544446 -39650986 - B3A SINE B2 -16 182 2 7 1786 192 77 0 0 chr1 157544466 157544492 -39650940 + (ATG)n Simple_repeat Simple_repeat 1 26 0 7 1786 267 248 134 54 chr1 157544863 157545012 -39650420 + B4A SINE B4 14 174 -118 8 1786 225 197 0 0 chr1 157545297 157545358 -39650074 + T-rich Low_complexity Low_complexity 1 61 0 8 1786 21 36 0 0 chr1 157546594 157546622 -39648810 + AT_rich Low_complexity Low_complexity 1 28 0 8 1787 405 0 0 0 chr1 157548780 157548825 -39646607 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 8 1787 558 0 0 0 chr1 157551098 157551160 -39644272 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 8 1787 403 264 71 18 chr1 157551189 157551301 -39644131 + Tigger12c DNA MER2_type 28 145 -589 8 1787 199 266 62 0 chr1 157553312 157553376 -39642056 - MIR SINE MIR 0 262 195 8 1787 451 185 16 0 chr1 157553648 157553842 -39641590 + (TG)n Simple_repeat Simple_repeat 1 197 0 8 1787 21 36 0 0 chr1 157554043 157554071 -39641361 + AT_rich Low_complexity Low_complexity 1 28 0 8 1787 1159 68 7 0 chr1 157555183 157555329 -39640103 + B1_Mm SINE Alu 1 147 0 8 1787 964 173 11 11 chr1 157555715 157555896 -39639536 + URR1B DNA MER1_type 45 225 0 9 1787 333 0 0 0 chr1 157556201 157556238 -39639194 + (TTGG)n Simple_repeat Simple_repeat 3 39 0 9 1787 405 0 0 0 chr1 157557964 157558009 -39637423 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1787 221 167 0 23 chr1 157558425 157558468 -39636964 + GA-rich Low_complexity Low_complexity 2 43 0 9 1787 667 262 31 0 chr1 157560159 157560319 -39635113 + B3A SINE B2 3 167 -31 9 1787 663 48 0 0 chr1 157560319 157560402 -39635030 + (GA)n Simple_repeat Simple_repeat 2 84 0 9 1787 234 0 0 0 chr1 157560911 157560937 -39634495 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 9 1787 604 279 99 51 chr1 157561277 157561590 -39633842 + MTEa LTR MaLR 39 366 -13 9 1787 184 184 26 0 chr1 157562219 157562257 -39633175 + L2 LINE L2 882 920 -2499 9 1787 240 342 95 70 chr1 157562694 157563125 -39632307 + L2 LINE L2 1601 2042 -1377 9 1787 268 312 197 9 chr1 157563891 157564124 -39631308 - B4 SINE B4 -14 278 2 9 1787 249 33 0 0 chr1 157564144 157564174 -39631258 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1787 978 149 0 0 chr1 157564180 157564328 -39631104 - B1_Mur1 SINE Alu 0 149 2 1 1787 410 286 54 23 chr1 157564398 157564527 -39630905 - MIR3 SINE MIR -16 192 60 1 1787 1302 277 33 5 chr1 157564532 157564899 -39630533 + MTEa LTR MaLR 3 379 0 1 1787 246 214 0 0 chr1 157566551 157566607 -39628825 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1787 198 91 0 0 chr1 157566611 157566644 -39628788 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1787 261 0 0 0 chr1 157568054 157568083 -39627349 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1787 855 0 0 0 chr1 157569771 157569866 -39625566 + (GA)n Simple_repeat Simple_repeat 1 95 0 1 1787 365 247 150 20 chr1 157571392 157571545 -39623887 - MIR SINE MIR -46 216 44 1 1787 267 286 39 0 chr1 157572455 157572532 -39622900 - ID4_ SINE ID -3 80 1 1 1787 216 0 0 0 chr1 157573014 157573038 -39622394 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1787 916 305 17 11 chr1 157573486 157573834 -39621598 + L1M2 LINE L1 5435 5784 -516 1 1787 571 233 74 48 chr1 157573838 157574027 -39621405 + B3A SINE B2 5 198 0 1 1787 1359 58 0 25 chr1 157574218 157574377 -39621055 + B2_Mm1a SINE B2 2 160 -33 1 1787 351 0 0 0 chr1 157574377 157574416 -39621016 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1787 1359 58 0 25 chr1 157574416 157574432 -39621000 + B2_Mm1a SINE B2 161 175 -18 1 1787 763 228 101 0 chr1 157574432 157574621 -39620811 + B3 SINE B2 1 208 -8 1 1787 1359 58 0 25 chr1 157574621 157574640 -39620792 + B2_Mm1a SINE B2 176 192 -1 1 1787 440 318 0 0 chr1 157574674 157574800 -39620632 + ID_B1 SINE B4 98 223 -1 1 1787 385 273 91 0 chr1 157575281 157575380 -39620052 + PB1D10 SINE Alu 1 108 -9 1 1787 369 0 0 0 chr1 157575406 157575447 -39619985 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 1 1787 373 289 142 19 chr1 157575517 157575679 -39619753 + MIR SINE MIR 21 202 -60 1 1787 211 326 20 0 chr1 157578325 157578423 -39617009 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1787 211 114 0 28 chr1 157578639 157578675 -39616757 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 1 1787 237 65 0 0 chr1 157578675 157578706 -39616726 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1787 504 0 0 0 chr1 157578706 157578761 -39616671 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1787 339 270 109 10 chr1 157578879 157578980 -39616452 + MIRc SINE MIR 96 206 -62 1 1787 290 282 8 98 chr1 157579099 157579221 -39616211 + BC1_Mm scRNA scRNA 2 112 -40 1 1787 183 100 0 0 chr1 157581705 157581735 -39613697 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 1 1787 180 0 0 0 chr1 157583936 157583956 -39611476 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1787 210 37 0 0 chr1 157585375 157585402 -39610030 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1787 207 204 0 0 chr1 157587071 157587125 -39608307 + CT-rich Low_complexity Low_complexity 4 57 0 1 1787 182 132 0 50 chr1 157589281 157589321 -39606111 + C-rich Low_complexity Low_complexity 5 42 0 1 1787 468 386 42 21 chr1 157590926 157591212 -39604220 + L1M5 LINE L1 5498 5789 -335 1 1787 249 312 0 94 chr1 157591414 157591499 -39603933 - ID4 SINE ID -3 80 4 1 1787 226 238 15 31 chr1 157591669 157591734 -39603698 + GA-rich Low_complexity Low_complexity 1 64 0 1 1787 488 245 9 19 chr1 157592227 157592335 -39603097 - ID_B1 SINE B4 -26 198 92 1 1787 402 276 0 28 chr1 157592370 157592478 -39602954 - B1F SINE Alu -9 140 36 1 1787 638 159 76 0 chr1 157592508 157592640 -39602792 + B1_Mus1 SINE Alu 1 142 -6 1 1787 336 102 0 0 chr1 157592642 157592691 -39602741 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 1 1787 189 0 0 0 chr1 157593242 157593263 -39602169 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1787 468 226 67 32 chr1 157593704 157593919 -39601513 - MIRc SINE MIR 0 268 21 1 1787 297 338 102 14 chr1 157594739 157594886 -39600546 - MIR SINE MIR -70 192 33 1 1787 192 274 65 0 chr1 157595109 157595171 -39600261 - L2b LINE L2 -2 3373 3308 1 1787 783 236 72 19 chr1 157595509 157595716 -39599716 - ID_B1 SINE B4 -6 218 1 1 1787 234 0 0 0 chr1 157597314 157597340 -39598092 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1 1787 655 285 117 16 chr1 157597381 157597638 -39597794 + MER33 DNA MER1_type 1 283 -41 1 1787 428 247 199 24 chr1 157599970 157600136 -39595296 + B3A SINE B2 2 196 -2 1 1787 315 325 16 24 chr1 157600983 157601109 -39594323 + L2b LINE L2 3250 3374 -1 1 1787 968 116 7 15 chr1 157601571 157601851 -39593581 + (TTCC)n Simple_repeat Simple_repeat 1 277 0 1 1787 933 136 43 43 chr1 157602264 157602449 -39592983 - B2_Mm2 SINE B2 0 195 11 1 1787 207 0 0 0 chr1 157602496 157602519 -39592913 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1787 8998 9 0 0 chr1 157602534 157604275 -39591157 - L1Md_A LINE L1 0 6582 4842 1 1787 333 100 0 0 chr1 157604541 157604591 -39590841 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 1 1787 609 209 0 0 chr1 157604622 157604732 -39590700 + RSINE1 SINE B4 3 112 -53 1 1787 198 150 0 0 chr1 157604805 157604845 -39590587 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1787 249 310 44 55 chr1 157605134 157605271 -39590161 - MLT1J LTR MaLR -277 235 67 1 1787 411 73 0 0 chr1 157605479 157605534 -39589898 + (GGGTG)n Simple_repeat Simple_repeat 3 57 0 1 1787 1473 58 16 0 chr1 157606834 157607025 -39588407 + B2_Mm2 SINE B2 1 194 -1 1 1787 1183 236 79 11 chr1 157607171 157607690 -39587742 - Lx8 LINE L1 -227 7246 6665 1 1787 398 301 7 111 chr1 157607752 157607905 -39587527 + ID_B1 SINE B4 80 216 -8 1 1787 461 233 100 0 chr1 157609201 157609321 -39586111 - ID_B1 SINE B4 -2 222 91 1 1787 300 302 43 85 chr1 157609377 157609518 -39585914 - B1F1 SINE Alu -14 135 1 1 1787 281 222 0 0 chr1 157609704 157609758 -39585674 + ID_B1 SINE B4 171 224 0 1 1787 1080 37 22 0 chr1 157609760 157609895 -39585537 + B1_Mus2 SINE Alu 1 138 -9 1 1787 240 111 0 0 chr1 157609895 157609931 -39585501 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1787 226 250 82 59 chr1 157609970 157610004 -39585428 - B1_Mus2 SINE Alu -34 113 27 1 1787 306 120 0 20 chr1 157610004 157610055 -39585377 - ID_B1 SINE B4 -67 157 108 1 1787 377 255 53 0 chr1 157610159 157610253 -39585179 + B1F1 SINE Alu 3 101 -48 1 1787 198 103 0 0 chr1 157610253 157610282 -39585150 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 1 1787 1904 172 5 27 chr1 157610282 157610653 -39584779 - MTC LTR MaLR -4 417 55 1 1787 2565 79 2 36 chr1 157610653 157611046 -39584386 + L1Md_F2 LINE L1 6200 6579 -3 1 1787 336 148 0 0 chr1 157611107 157611161 -39584271 - MTC LTR MaLR -355 66 13 1 1787 21 0 0 0 chr1 157611206 157611227 -39584205 + AT_rich Low_complexity Low_complexity 1 21 0 1 1787 195 162 0 0 chr1 157611283 157611320 -39584112 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 1 1787 798 71 92 31 chr1 157611333 157611463 -39583969 - B1_Mur4 SINE Alu -5 145 8 1 1787 328 84 313 25 chr1 157611710 157611825 -39583607 - B2_Mm2 SINE B2 -1 194 47 1 1787 1270 113 11 6 chr1 157611857 157612035 -39583397 - B2_Mm1t SINE B2 -14 179 1 1 1787 2318 79 16 7 chr1 157612306 157612612 -39582820 - RLTR27 LTR ERVK 0 309 1 1 1787 1488 227 36 26 chr1 157612612 157613176 -39582256 - MMERVK10C-int LTR ERVK 0 7581 6907 1 1787 4839 310 27 37 chr1 157613400 157616210 -39579222 - MMERVK10C-int LTR ERVK -3526 4055 1365 1 1787 299 274 120 19 chr1 157616583 157616691 -39578741 - MMERVK10C-int LTR ERVK -6765 915 797 1 1787 685 233 45 45 chr1 157616792 157616990 -39578442 - MMERVK10C-int LTR ERVK -1135 852 655 1 1787 351 88 6 0 chr1 157617022 157617075 -39578357 - MMERVK10C-int LTR ERVK -7314 267 163 1 1787 2323 86 13 7 chr1 157617102 157617407 -39578025 - RLTR27 LTR ERVK -2 307 1 1 1787 448 216 189 0 chr1 157617722 157617833 -39577599 + B1F SINE Alu 16 147 -2 1 1787 782 232 69 83 chr1 157617833 157618110 -39577322 + B4A SINE B4 2 274 -18 1 1787 2271 125 16 45 chr1 157618139 157618517 -39576915 + ORR1B2 LTR MaLR 1 367 0 1 1787 2039 117 92 6 chr1 157618867 157619193 -39576239 - ORR1B1 LTR MaLR 0 394 41 1 1787 1937 172 173 110 chr1 157619447 157620112 -39575320 - RMER6D LTR ERVK -13 707 1 1 1787 709 192 51 6 chr1 157620736 157620893 -39574539 + RMER6C LTR ERVK 467 630 -60 1 1787 297 339 23 52 chr1 157621515 157621689 -39573743 - B4 SINE B4 -121 171 3 1 1787 459 0 0 0 chr1 157621953 157622004 -39573428 + (GGA)n Simple_repeat Simple_repeat 3 53 0 1 1787 441 202 0 103 chr1 157622083 157622098 -39573334 + MT2B LTR ERVL 154 156 -445 1 1787 939 152 0 0 chr1 157622098 157622243 -39573189 + B1_Mus1 SINE Alu 3 147 -1 1 1787 260 111 0 22 chr1 157622270 157622316 -39573116 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 1 1787 205 333 0 11 chr1 157623679 157623770 -39571662 + GA-rich Low_complexity Low_complexity 2 91 0 1 1787 301 22 43 0 chr1 157623770 157623816 -39571616 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1787 206 136 22 43 chr1 157627284 157627330 -39568102 + A-rich Low_complexity Low_complexity 3 47 0 1 1787 352 222 130 10 chr1 157627339 157627439 -39567993 + PB1D10 SINE Alu 1 112 -5 1 1787 402 221 0 0 chr1 157627453 157627530 -39567902 + ID4_ SINE ID 6 82 -1 1 1787 218 266 47 113 chr1 157627530 157627559 -39567873 + B4 SINE B4 6 104 -188 1 1787 1457 75 16 0 chr1 157627654 157627841 -39567591 - B2_Mm2 SINE B2 -3 192 3 1 1787 440 111 0 14 chr1 157629283 157629356 -39566076 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1787 477 226 0 47 chr1 157630119 157630226 -39565206 + PB1D10 SINE Alu 9 110 -7 1 1787 232 342 74 16 chr1 157634159 157634281 -39561151 + MIRb SINE MIR 69 197 -71 1 1787 645 183 134 24 chr1 157634919 157635090 -39560342 + B3A SINE B2 2 186 -9 1 1787 221 190 0 23 chr1 157635541 157635584 -39559848 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1787 382 284 11 0 chr1 157635891 157635986 -39559446 - PB1D10 SINE Alu -21 96 1 2 1787 212 188 183 28 chr1 157636897 157636968 -39558464 + ID4 SINE ID 2 83 0 2 1787 983 140 41 41 chr1 157638537 157638731 -39556701 - B2_Mm2 SINE B2 0 195 2 2 1787 212 268 232 20 chr1 157638955 157639054 -39556378 + MIRb SINE MIR 14 133 -135 2 1787 279 0 0 0 chr1 157640517 157640548 -39554884 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1787 431 18 0 18 chr1 157640548 157640604 -39554828 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1787 299 268 46 11 chr1 157640992 157641079 -39554353 + MTEa LTR MaLR 288 377 -2 2 1787 315 306 56 16 chr1 157643353 157643479 -39551953 + MIRb SINE MIR 35 165 -103 2 1787 279 0 0 0 chr1 157645027 157645058 -39550374 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 1787 500 263 26 0 chr1 157645478 157645592 -39549840 + RSINE1 SINE B4 11 127 -38 2 1787 456 111 0 0 chr1 157645595 157645667 -39549765 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1787 2300 127 12 81 chr1 157645910 157646320 -39549112 + ORR1C2 LTR MaLR 3 384 0 2 1787 324 0 0 0 chr1 157646642 157646678 -39548754 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1787 856 259 30 10 chr1 157646679 157646882 -39548550 - B3 SINE B2 -7 209 3 2 1787 234 0 0 0 chr1 157648550 157648576 -39546856 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1787 1653 21 5 0 chr1 157649356 157649546 -39545886 + B2_Mm1a SINE B2 2 192 -1 2 1787 827 183 234 0 chr1 157649980 157650155 -39545277 + B3 SINE B2 1 216 0 2 1787 1180 183 27 18 chr1 157652530 157652753 -39542679 - URR1B DNA MER1_type 0 225 1 2 1787 235 313 62 71 chr1 157653374 157653553 -39541879 - MIRb SINE MIR -62 206 25 2 1787 378 0 0 0 chr1 157653680 157653722 -39541710 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1787 617 240 8 0 chr1 157653722 157653851 -39541581 - B1_Mur1 SINE Alu -19 130 1 2 1787 1159 102 134 20 chr1 157654310 157654511 -39540921 + URR1A DNA MER1_type 1 224 -2 2 1787 1210 48 14 0 chr1 157654537 157654682 -39540750 + B1_Mus2 SINE Alu 1 147 0 2 1787 242 29 29 0 chr1 157654695 157654730 -39540702 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1787 564 139 191 0 chr1 157654892 157655007 -39540425 + B1_Mus1 SINE Alu 1 137 -11 2 1787 749 226 35 23 chr1 157656202 157656374 -39539058 + B3 SINE B2 40 213 -3 2 1787 1215 105 23 0 chr1 157656374 157656546 -39538886 + B2_Mm1t SINE B2 2 177 -16 2 1787 282 87 0 0 chr1 157656549 157656595 -39538837 + (CAAAG)n Simple_repeat Simple_repeat 2 47 0 2 1787 797 138 0 0 chr1 157658203 157658319 -39537113 + B1_Mur4 SINE Alu 35 150 0 2 1787 205 267 0 0 chr1 157659858 157659903 -39535529 + (CAG)n Simple_repeat Simple_repeat 2 46 0 2 1787 353 262 87 10 chr1 157661150 157661254 -39534178 + PB1D10 SINE Alu 5 116 -1 2 1787 776 194 26 11 chr1 157661622 157661775 -39533657 - B1_Mur2 SINE Alu -1 148 2 2 1787 342 213 107 0 chr1 157662667 157662742 -39532690 + RSINE1 SINE B4 15 97 -68 2 1787 199 314 152 0 chr1 157663132 157663237 -39532195 - MIRb SINE MIR -49 219 99 2 1787 281 229 115 77 chr1 157663775 157663879 -39531553 - PB1D10 SINE Alu -2 115 8 2 1787 287 138 33 49 chr1 157663928 157663989 -39531443 - MLT1A LTR MaLR -257 117 58 2 1787 376 190 70 16 chr1 157664015 157664109 -39531323 - B1F1 SINE Alu -20 100 6 2 1787 429 109 0 0 chr1 157664159 157664223 -39531209 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1787 970 280 94 3 chr1 157664362 157664498 -39530934 - MTEa LTR MaLR -66 313 158 2 1787 270 0 0 0 chr1 157664498 157664528 -39530904 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2 1787 970 280 94 3 chr1 157664528 157664678 -39530754 - MTEa LTR MaLR -222 157 1 2 1787 1160 52 7 0 chr1 157665076 157665212 -39530220 + B1_Mm SINE Alu 2 138 -9 2 1787 245 275 87 28 chr1 157665328 157665488 -39529944 - L1MEa LINE L1 -1145 5001 4819 2 1787 798 41 0 0 chr1 157665495 157665593 -39529839 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1787 555 252 33 26 chr1 157665597 157665748 -39529684 - RSINE1 SINE B4 0 165 14 2 1787 424 227 55 0 chr1 157665811 157665921 -39529511 - L1MB7 LINE L1 -19 6165 6050 2 1787 227 244 109 22 chr1 157666235 157666327 -39529105 - L1MB5 LINE L1 -56 6118 6019 2 1787 287 229 87 40 chr1 157667434 157667607 -39527825 - L1MEa LINE L1 -4052 2190 2010 2 1787 646 168 78 28 chr1 157667632 157667773 -39527659 - B1_Mur1 SINE Alu 0 149 2 2 1787 452 330 21 16 chr1 157668080 157668268 -39527164 + MER58A DNA MER1_type 28 216 -8 2 1787 400 305 84 25 chr1 157668278 157668480 -39526952 - L1MEa LINE L1 -4416 1826 1613 2 1787 3605 133 88 26 chr1 157668521 157668739 -39526693 + RMER6C LTR ERVK 1 216 -474 2 1787 1134 82 0 14 chr1 157668739 157668879 -39526553 + B1_Mus1 SINE Alu 1 140 -8 2 1787 282 87 0 0 chr1 157668879 157668925 -39526507 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 1787 3605 133 88 26 chr1 157668932 157669359 -39526073 + RMER6C LTR ERVK 217 686 -4 2 1787 540 252 46 0 chr1 157669415 157669566 -39525866 - RSINE1 SINE B4 -6 159 2 2 1787 266 173 160 0 chr1 157669567 157669642 -39525790 - L1MEa LINE L1 -4706 1536 1450 2 1787 195 42 0 0 chr1 157669735 157669759 -39525673 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1787 255 269 0 15 chr1 157669814 157669882 -39525550 + ID4 SINE ID 14 80 -3 2 1787 340 308 18 18 chr1 157670726 157670835 -39524597 - PB1D10 SINE Alu -6 111 3 2 1787 707 240 70 28 chr1 157670835 157671143 -39524289 - MTD LTR MaLR 0 419 47 2 1787 704 106 0 28 chr1 157671527 157671634 -39523798 + RMER1B Other Other 568 671 -395 2 1787 465 313 32 111 chr1 157672088 157672368 -39523064 - L1MEa LINE L1 -5675 461 204 2 1787 27 49 0 0 chr1 157672657 157672698 -39522734 + AT_rich Low_complexity Low_complexity 1 41 0 2 1787 338 261 194 0 chr1 157672704 157672838 -39522594 - B3 SINE B2 -2 214 55 2 1787 1182 68 0 0 chr1 157672838 157672986 -39522446 + B1_Mus1 SINE Alu 1 148 0 2 1787 296 88 0 81 chr1 157672986 157673073 -39522359 + A-rich Low_complexity Low_complexity 4 83 0 2 1787 378 169 0 0 chr1 157673073 157673138 -39522294 - B3A SINE B2 -131 67 3 2 1787 454 359 15 49 chr1 157673215 157673420 -39522012 - MER63A DNA AcHobo -11 199 2 2 1787 220 203 156 0 chr1 157673659 157673723 -39521709 - ID4_ SINE ID -5 78 5 2 1787 227 31 0 30 chr1 157675239 157675272 -39520160 + (CCTCG)n Simple_repeat Simple_repeat 4 35 0 2 1787 533 325 120 0 chr1 157675455 157675729 -39519703 - MLT1E2 LTR MaLR -23 604 298 2 1787 339 321 82 55 chr1 157675886 157676143 -39519289 - MLT1E2 LTR MaLR -338 289 26 2 1787 1439 71 5 0 chr1 157676322 157676506 -39518926 + B2_Mm2 SINE B2 3 187 -8 2 1787 267 286 154 0 chr1 157676544 157676635 -39518797 + PB1D10 SINE Alu 23 127 0 2 1787 314 209 30 0 chr1 157676645 157676712 -39518720 + ID4_ SINE ID 1 69 -14 2 1787 243 294 101 0 chr1 157676744 157676853 -39518579 + L2 LINE L2 2337 2456 -963 2 1787 386 238 4 15 chr1 157677387 157677480 -39517952 + PB1D10 SINE Alu 1 93 -56 2 1787 386 273 87 41 chr1 157677775 157677947 -39517485 - MIR SINE MIR -13 249 70 2 1787 419 279 80 0 chr1 157678282 157678459 -39516973 + MER115 DNA Tip100 501 690 -3 2 1787 186 254 14 29 chr1 157678702 157678771 -39516661 + MIR SINE MIR 45 112 -150 2 1787 939 135 7 33 chr1 157679331 157679484 -39515948 + B1_Mur4 SINE Alu 2 150 0 2 1788 444 295 104 10 chr1 157679829 157680031 -39515401 + MIR SINE MIR 42 262 0 2 1788 7217 201 88 21 chr1 157681925 157684116 -39511316 - L1_Rod LINE L1 -2424 3423 1091 2 1788 724 171 14 14 chr1 157684118 157684266 -39511166 - B2_Mm2 SINE B2 -22 173 26 2 1788 1279 244 25 60 chr1 157684271 157684757 -39510675 - L1_Rod LINE L1 -6511 1097 516 2 1788 681 270 53 34 chr1 157684818 157685025 -39510407 - B4A SINE B4 -61 231 21 2 1788 472 161 11 22 chr1 157685061 157685150 -39510282 - B1_Mus2 SINE Alu -1 146 59 2 1788 1080 282 48 13 chr1 157685489 157685805 -39509627 + RCHARR1 DNA MER1_type 39 365 -609 2 1788 237 214 143 19 chr1 157685920 157685969 -39509463 + RCHARR1 DNA MER1_type 375 434 -540 2 1788 2098 91 60 25 chr1 157685969 157686285 -39509147 - ORR1A2 LTR MaLR 0 327 1 2 1788 237 214 143 19 chr1 157686285 157686340 -39509092 + RCHARR1 DNA MER1_type 435 491 -483 2 1788 652 219 89 48 chr1 157686351 157686519 -39508913 + B3 SINE B2 42 216 0 2 1788 268 67 0 62 chr1 157686522 157686561 -39508871 + RCHARR1 DNA MER1_type 481 517 -457 2 1788 266 0 0 29 chr1 157686561 157686596 -39508836 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1788 440 313 13 33 chr1 157687207 157687359 -39508073 + RSINE1 SINE B4 1 149 -16 2 1788 395 289 79 97 chr1 157687422 157687587 -39507845 + B3A SINE B2 1 162 -36 2 1788 22 35 0 0 chr1 157687587 157687616 -39507816 + AT_rich Low_complexity Low_complexity 1 29 0 2 1788 215 133 22 0 chr1 157687677 157687722 -39507710 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2 1788 4084 125 36 37 chr1 157688318 157688812 -39506620 + RMER6A LTR ERVK 1 489 -267 2 1788 1657 178 34 122 chr1 157688812 157689248 -39506184 - RMER10B LTR ERVL 0 398 1 2 1788 4084 125 36 37 chr1 157689248 157689510 -39505922 + RMER6A LTR ERVK 490 756 0 2 1788 294 356 89 48 chr1 157689658 157689826 -39505606 + MER70-int LTR ERVL 3317 3491 -1532 2 1788 257 156 0 29 chr1 157690094 157690172 -39505260 + B1_Mus2 SINE Alu 41 140 -7 2 1788 342 67 0 0 chr1 157690391 157690436 -39504996 + (CTGTG)n Simple_repeat Simple_repeat 5 49 0 2 1788 21 0 0 0 chr1 157694701 157694722 -39500710 + AT_rich Low_complexity Low_complexity 1 21 0 2 1788 395 211 53 73 chr1 157696191 157696311 -39499121 + PB1D10 SINE Alu 1 115 -2 2 1788 1145 75 0 20 chr1 157697421 157697570 -39497862 - B1_Mus2 SINE Alu 0 147 2 2 1788 286 227 0 15 chr1 157697670 157697737 -39497695 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 2 1788 2689 211 143 7 chr1 157698027 157698797 -39496635 + RCHARR1 DNA MER1_type 85 959 -15 2 1788 456 257 17 17 chr1 157699119 157699234 -39496198 - PB1D7 SINE Alu -5 115 1 2 1788 228 279 163 0 chr1 157699252 157699381 -39496051 + L3 LINE CR1 3565 3714 -775 2 1788 521 260 73 39 chr1 157700497 157700701 -39494731 + B4A SINE B4 36 246 -46 2 1788 435 197 39 54 chr1 157700996 157701125 -39494307 - ORR1D1 LTR MaLR -240 134 8 3 1788 379 274 0 0 chr1 157701141 157701236 -39494196 + B1F SINE Alu 21 115 -34 3 1788 317 232 0 47 chr1 157701351 157701437 -39493995 + PB1D10 SINE Alu 35 116 -1 3 1788 547 205 85 16 chr1 157703434 157703563 -39491869 + B1_Mur1 SINE Alu 4 141 -8 3 1788 403 263 30 10 chr1 157703585 157703685 -39491747 - PB1D10 SINE Alu -12 105 4 3 1788 423 172 23 11 chr1 157704338 157704426 -39491006 + PB1D10 SINE Alu 18 106 -11 3 1788 288 0 0 0 chr1 157704426 157704458 -39490974 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1788 21 0 0 0 chr1 157704772 157704793 -39490639 + AT_rich Low_complexity Low_complexity 1 21 0 3 1788 721 247 21 32 chr1 157705536 157705724 -39489708 - B3A SINE B2 -9 189 4 3 1788 359 229 170 9 chr1 157705931 157706037 -39489395 - PB1 SINE Alu -1 126 4 3 1788 372 312 109 36 chr1 157706496 157706689 -39488743 - MER58A DNA MER1_type -17 207 1 3 1788 297 243 132 28 chr1 157706954 157707060 -39488372 + PB1D10 SINE Alu 1 117 0 3 1788 208 255 0 18 chr1 157707448 157707504 -39487928 + GA-rich Low_complexity Low_complexity 3 57 0 3 1788 29 47 0 0 chr1 157708164 157708207 -39487225 + AT_rich Low_complexity Low_complexity 1 43 0 3 1788 22 0 0 0 chr1 157710874 157710896 -39484536 + AT_rich Low_complexity Low_complexity 1 22 0 3 1788 1030 58 7 0 chr1 157710925 157711063 -39484369 + B1_Mm SINE Alu 9 147 0 3 1788 1037 210 45 10 chr1 157711282 157711484 -39483948 + B3 SINE B2 3 211 -5 3 1788 495 0 0 0 chr1 157711547 157711602 -39483830 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1788 289 246 151 122 chr1 157712635 157712774 -39482658 - B3A SINE B2 -55 143 1 3 1788 256 289 108 0 chr1 157713008 157713091 -39482341 - B3A SINE B2 -106 92 1 3 1788 419 176 54 11 chr1 157714286 157714378 -39481054 - ID_B1 SINE B4 -26 198 103 3 1788 443 211 34 76 chr1 157714376 157714494 -39480938 - B3A SINE B2 -84 114 2 3 1788 717 200 120 16 chr1 157714529 157714712 -39480720 - B3 SINE B2 -14 202 1 3 1788 484 273 83 0 chr1 157714738 157714859 -39480573 - B1F SINE Alu -17 132 2 3 1788 256 180 81 16 chr1 157714895 157714957 -39480475 - ID4 SINE ID -15 68 3 3 1788 227 298 8 31 chr1 157715272 157715400 -39480032 - L1M5 LINE L1 -302 5822 5698 3 1788 366 103 0 0 chr1 157715988 157716046 -39479386 - BC1_Mm scRNA scRNA -57 95 38 3 1788 23 54 0 0 chr1 157716051 157716088 -39479344 + AT_rich Low_complexity Low_complexity 1 37 0 3 1788 516 220 36 18 chr1 157716323 157716434 -39478998 - B1_Mur1 SINE Alu -30 119 7 3 1788 426 243 14 0 chr1 157717216 157717313 -39478119 - PB1D10 SINE Alu -5 112 15 3 1788 272 336 91 0 chr1 157717512 157717622 -39477810 - B1F SINE Alu -12 137 18 3 1788 217 343 101 0 chr1 157717761 157717860 -39477572 + MIRc SINE MIR 19 127 -141 3 1788 303 301 8 29 chr1 157718179 157718325 -39477107 + GA-rich Low_complexity Low_complexity 1 142 0 3 1788 908 160 0 0 chr1 157718715 157718859 -39476573 - B1_Mur4 SINE Alu -5 145 2 3 1788 22 35 0 0 chr1 157718875 157718904 -39476528 + AT_rich Low_complexity Low_complexity 1 29 0 3 1788 24 0 0 0 chr1 157719285 157719309 -39476123 + AT_rich Low_complexity Low_complexity 1 24 0 3 1788 580 253 31 25 chr1 157719451 157719613 -39475819 - RSINE1 SINE B4 0 165 3 3 1788 882 195 0 20 chr1 157720632 157720784 -39474648 + B1_Mur2 SINE Alu 1 149 0 3 1788 595 243 95 0 chr1 157721030 157721199 -39474233 - B4 SINE B4 0 292 108 3 1788 308 53 75 112 chr1 157721199 157721306 -39474126 + (CATTA)n Simple_repeat Simple_repeat 1 103 0 3 1788 314 250 23 45 chr1 157721322 157721410 -39474022 - B4 SINE B4 -205 87 2 3 1788 221 169 33 17 chr1 157721448 157721508 -39473924 + A-rich Low_complexity Low_complexity 4 64 0 3 1788 1111 68 0 20 chr1 157721539 157721688 -39473744 + B1_Mus2 SINE Alu 1 146 -1 3 1788 581 227 109 12 chr1 157722693 157722854 -39472578 - B3 SINE B2 -10 185 27 3 1788 26 0 0 0 chr1 157722888 157722914 -39472518 + AT_rich Low_complexity Low_complexity 1 26 0 3 1788 8022 116 48 6 chr1 157722985 157724289 -39471143 + Lx4A LINE L1 5697 7054 -4 3 1788 38 68 0 0 chr1 157724352 157724425 -39471007 + AT_rich Low_complexity Low_complexity 1 73 0 3 1788 993 210 11 0 chr1 157724450 157724626 -39470806 + B3 SINE B2 36 213 -3 3 1788 403 292 62 14 chr1 157724691 157724837 -39470595 + RSINE1 SINE B4 3 155 -10 3 1788 250 267 176 151 chr1 157725196 157725240 -39470192 - RSINE1 SINE B4 0 165 128 3 1788 258 32 0 0 chr1 157725240 157725271 -39470161 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1788 250 267 176 151 chr1 157725271 157725385 -39470047 - RSINE1 SINE B4 -38 127 3 3 1788 2233 117 100 0 chr1 157725424 157725793 -39469639 + MTC LTR MaLR 13 418 -3 3 1788 266 292 47 0 chr1 157726478 157726584 -39468848 + L1M5 LINE L1 5548 5658 -582 3 1788 249 239 0 29 chr1 157726716 157726785 -39468647 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1788 239 172 0 121 chr1 157726785 157726851 -39468581 - MER3 DNA MER1_type -79 130 73 3 1788 611 232 29 7 chr1 157727126 157727265 -39468167 + RSINE1 SINE B4 5 146 -19 3 1788 292 264 45 9 chr1 157728467 157728578 -39466854 + Charlie1a DNA MER1_type 1093 1207 -248 3 1788 697 213 182 21 chr1 157728637 157728824 -39466608 - ID_B1 SINE B4 -2 222 6 3 1788 270 235 103 121 chr1 157728885 157728958 -39466474 - BC1_Mm scRNA scRNA -36 116 57 3 1788 797 150 71 0 chr1 157728958 157729098 -39466334 + B1_Mur4 SINE Alu 1 150 0 3 1788 270 235 103 121 chr1 157729098 157729140 -39466292 - BC1_Mm scRNA scRNA -96 56 3 3 1788 498 211 52 82 chr1 157729166 157729300 -39466132 + Charlie1a DNA MER1_type 1325 1454 -1 3 1788 246 32 0 0 chr1 157729532 157729563 -39465869 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1788 191 271 0 14 chr1 157729614 157729685 -39465747 + CT-rich Low_complexity Low_complexity 1 70 0 3 1788 663 195 0 8 chr1 157729697 157729821 -39465611 - B1_Mur2 SINE Alu -5 144 22 3 1788 298 224 75 108 chr1 157729758 157729878 -39465554 - MT2B LTR ERVL -362 239 124 3 1788 327 318 128 38 chr1 157729939 157730020 -39465412 - L1M5 LINE L1 -1282 4864 4774 3 1788 3302 33 5 15 chr1 157730020 157730420 -39465012 + MTA_Mm LTR MaLR 1 396 0 3 1788 327 318 128 38 chr1 157730420 157730626 -39464806 - L1M5 LINE L1 -1373 4773 4551 3 1788 323 154 66 0 chr1 157730742 157730833 -39464599 + (TTTA)n Simple_repeat Simple_repeat 2 98 0 3 1788 824 246 20 8 chr1 157731178 157731370 -39464062 - B3A SINE B2 -7 188 4 3 1788 683 268 108 0 chr1 157731453 157731647 -39463785 - ID_B1 SINE B4 -9 215 1 3 1788 375 278 268 51 chr1 157731780 157732020 -39463412 - B4A SINE B4 0 292 1 3 1788 1041 93 0 35 chr1 157732076 157732220 -39463212 + B1_Mus2 SINE Alu 2 140 -7 3 1788 332 284 59 54 chr1 157732479 157732665 -39462767 - L1M5 LINE L1 -2367 3779 3593 3 1788 200 158 34 34 chr1 157734163 157734222 -39461210 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 1788 25 0 0 0 chr1 157734852 157734877 -39460555 + AT_rich Low_complexity Low_complexity 1 25 0 3 1788 22 56 0 0 chr1 157736013 157736049 -39459383 + AT_rich Low_complexity Low_complexity 1 36 0 3 1788 882 263 5 0 chr1 157736405 157736610 -39458822 + B3 SINE B2 1 206 -10 3 1788 306 0 0 0 chr1 157736621 157736655 -39458777 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1788 1092 113 0 6 chr1 157736658 157736818 -39458614 - B2_Mm2 SINE B2 -35 160 2 3 1788 1054 232 191 3 chr1 157737011 157737326 -39458106 + MTD LTR MaLR 26 399 -20 3 1788 623 301 101 50 chr1 157737428 157737725 -39457707 + ORR1E LTR MaLR 43 354 -5 3 1788 283 327 50 0 chr1 157737846 157737947 -39457485 - PB1D10 SINE Alu -11 106 1 3 1788 361 226 119 30 chr1 157738038 157738231 -39457201 - B4A SINE B4 -32 260 3 3 1788 770 178 20 0 chr1 157738527 157738673 -39456759 + B1_Mur2 SINE Alu 1 149 0 3 1788 2447 103 72 0 chr1 157738967 157739327 -39456105 + ORR1B1 LTR MaLR 1 386 -8 3 1788 280 330 9 46 chr1 157739775 157739883 -39455549 + PB1D10 SINE Alu 1 104 -13 3 1788 479 82 14 0 chr1 157740192 157740265 -39455167 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 3 1788 420 325 38 19 chr1 157740265 157740425 -39455007 + RSINE1 SINE B4 2 164 -1 3 1788 384 264 89 18 chr1 157740473 157740585 -39454847 + B4A SINE B4 2 121 -171 3 1788 809 163 37 7 chr1 157740779 157740915 -39454517 + B1_Mur1 SINE Alu 2 141 -8 3 1788 546 306 78 0 chr1 157740949 157741142 -39454290 + B4A SINE B4 1 208 -84 3 1788 691 197 31 16 chr1 157741202 157741331 -39454101 + B1F SINE Alu 7 137 -12 3 1788 216 0 0 0 chr1 157741331 157741355 -39454077 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1788 518 228 43 35 chr1 157742050 157742191 -39453241 + B1F1 SINE Alu 2 143 -6 3 1788 269 192 40 14 chr1 157742399 157742473 -39452959 + ID4_ SINE ID 1 76 -7 3 1788 298 296 87 22 chr1 157742701 157742839 -39452593 + B1F1 SINE Alu 1 147 -2 3 1788 1429 219 118 6 chr1 157743303 157743634 -39451798 + ORR1D1 LTR MaLR 1 368 -6 3 1788 385 282 52 43 chr1 157743662 157743873 -39451559 + L1MC4 LINE L1 7359 7571 -471 3 1788 21 36 0 0 chr1 157744127 157744155 -39451277 + AT_rich Low_complexity Low_complexity 1 28 0 3 1788 315 0 0 0 chr1 157745233 157745268 -39450164 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1788 859 141 25 6 chr1 157745269 157745428 -39450004 - B2_Mm2 SINE B2 -46 170 2 3 1788 247 167 24 0 chr1 157745620 157745662 -39449770 - B3A SINE B2 -138 60 18 3 1788 259 220 0 0 chr1 157745668 157745718 -39449714 - Charlie1a DNA MER1_type -930 525 476 3 1788 743 299 38 58 chr1 157745773 157746223 -39449209 + L1MA4 LINE L1 5468 5908 -392 4 1788 2108 174 35 3 chr1 157746235 157746609 -39448823 + ORR1B1 LTR MaLR 1 386 -8 4 1788 491 340 76 24 chr1 157746664 157746953 -39448479 - Charlie1a DNA MER1_type -985 470 167 3 1788 217 255 0 38 chr1 157747457 157747510 -39447922 - MIR SINE MIR -211 51 1 4 1788 214 158 0 0 chr1 157748151 157748189 -39447243 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1788 346 240 136 99 chr1 157749088 157749250 -39446182 + PB1 SINE Alu 10 311 0 4 1788 362 183 84 21 chr1 157749965 157750060 -39445372 - PB1D10 SINE Alu -11 106 6 4 1788 727 216 28 77 chr1 157749977 157750158 -39445274 - ID_B1 SINE B4 -52 172 1 4 1788 3722 166 56 24 chr1 157750370 157751359 -39444073 + RMER1B Other Other 38 1066 0 4 1788 26 0 0 0 chr1 157751360 157751386 -39444046 + AT_rich Low_complexity Low_complexity 1 26 0 4 1788 738 286 104 47 chr1 157751500 157751903 -39443529 + Lx9 LINE L1 6514 6939 -705 4 1788 752 89 161 8 chr1 157752230 157752354 -39443078 + B1_Mm SINE Alu 5 147 0 4 1788 278 285 122 81 chr1 157752235 157752407 -39443025 + B4A SINE B4 94 272 -20 4 1788 1021 203 41 0 chr1 157753051 157753248 -39442184 + B3 SINE B2 2 206 -10 4 1788 346 157 264 22 chr1 157753269 157753360 -39442072 - MLT1-int LTR MaLR -780 591 479 4 1788 235 349 0 0 chr1 157753443 157753509 -39441923 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 4 1788 272 254 0 0 chr1 157753461 157753520 -39441912 + ID4 SINE ID 25 83 0 4 1788 225 167 0 0 chr1 157753551 157753593 -39441839 - MLT-int LTR MaLR -1386 349 308 4 1788 304 247 65 0 chr1 157754189 157754266 -39441166 - PB1D10 SINE Alu -6 111 30 4 1788 381 347 54 0 chr1 157754205 157754372 -39441060 - ID_B1 SINE B4 -48 176 1 4 1788 254 260 48 9 chr1 157754415 157754520 -39440912 + L1MC4 LINE L1 7929 8037 -5 4 1788 512 312 108 57 chr1 157754694 157755119 -39440313 + L1MB8 LINE L1 5455 5901 -277 4 1788 267 296 0 22 chr1 157755652 157755742 -39439690 + A-rich Low_complexity Low_complexity 1 88 0 4 1788 214 350 0 0 chr1 157755748 157755808 -39439624 + MIRb SINE MIR 9 68 -200 4 1788 426 20 0 0 chr1 157755808 157755859 -39439573 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1788 322 192 14 14 chr1 157755941 157756015 -39439417 - B3A SINE B2 -124 74 1 4 1788 455 169 90 0 chr1 157756727 157756829 -39438603 + B1_Mus1 SINE Alu 1 112 -8 4 1788 216 0 0 0 chr1 157756836 157756860 -39438572 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1788 225 314 50 28 chr1 157756915 157757056 -39438376 + B1F SINE Alu 1 144 -5 4 1788 567 74 0 0 chr1 157757072 157757153 -39438279 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1788 401 182 279 9 chr1 157757155 157757266 -39438166 + B1_Mur1 SINE Alu 3 143 -6 4 1788 388 283 58 0 chr1 157757978 157758098 -39437334 + RSINE1 SINE B4 3 129 -36 4 1788 1344 86 11 0 chr1 157758739 157758926 -39436506 + B2_Mm1t SINE B2 2 190 -3 4 1788 267 93 0 0 chr1 157758931 157758974 -39436458 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1788 437 257 72 18 chr1 157759225 157759336 -39436096 - PB1D7 SINE Alu -3 117 1 4 1788 1035 65 50 7 chr1 157760107 157760247 -39435185 + B1_Mus1 SINE Alu 1 146 -2 4 1788 207 0 0 0 chr1 157760247 157760270 -39435162 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1788 284 238 59 10 chr1 157760279 157760381 -39435051 + L1M5 LINE L1 5564 5670 -509 4 1788 482 300 42 0 chr1 157760909 157761029 -39434403 + RSINE1 SINE B4 2 126 -39 4 1788 324 336 9 0 chr1 157761383 157761490 -39433942 - PB1D10 SINE Alu -9 108 1 4 1788 763 203 7 13 chr1 157761586 157761736 -39433696 - B1_Mur2 SINE Alu 0 149 1 4 1788 679 176 122 0 chr1 157763482 157763613 -39431819 - B1_Mur2 SINE Alu 0 149 3 4 1788 212 178 22 0 chr1 157763638 157763683 -39431749 - B4 SINE B4 -245 47 2 4 1788 725 277 88 135 chr1 157763850 157763971 -39431461 - MER44C DNA MER2_type 0 733 601 4 1788 725 224 50 25 chr1 157763971 157764172 -39431260 - B3 SINE B2 -8 208 3 4 1788 725 277 88 135 chr1 157764172 157764525 -39430907 - MER44C DNA MER2_type -133 600 281 4 1788 257 287 78 10 chr1 157764586 157764688 -39430744 - MER44C DNA MER2_type -597 136 28 4 1788 23 33 0 0 chr1 157764880 157764910 -39430522 + AT_rich Low_complexity Low_complexity 1 30 0 4 1788 345 100 0 0 chr1 157765016 157765066 -39430366 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1788 288 137 39 0 chr1 157765068 157765119 -39430313 - RLTR12B LTR ERVK -60 468 416 4 1788 6513 51 52 8 chr1 157765138 157766046 -39429386 - L1Md_F2 LINE L1 0 6582 5635 4 1788 347 191 5 11 chr1 157766065 157766143 -39429289 - L1_Mur1 LINE L1 -784 5102 5020 4 1788 534 216 0 29 chr1 157766182 157766287 -39429145 - RMER13A LTR ERVK -92 768 667 4 1788 2069 183 130 7 chr1 157766336 157766782 -39428650 - RMER13A LTR ERVK -359 501 1 4 1788 3456 118 30 15 chr1 157766814 157767407 -39428025 - L1_Mur1 LINE L1 -751 5135 4534 4 1788 6598 145 49 19 chr1 157767405 157768640 -39426792 + Lx3C LINE L1 5689 6961 -15 4 1788 246 227 0 129 chr1 157768775 157768876 -39426556 + RSINE1 SINE B4 78 165 0 4 1788 24 0 0 0 chr1 157769711 157769735 -39425697 + AT_rich Low_complexity Low_complexity 1 24 0 4 1788 592 231 42 7 chr1 157770019 157770163 -39425269 - B1_Mur2 SINE Alu 0 149 1 4 1788 25 0 0 0 chr1 157770235 157770260 -39425172 + AT_rich Low_complexity Low_complexity 1 25 0 4 1788 306 0 0 0 chr1 157770351 157770385 -39425047 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1788 505 181 0 15 chr1 157770385 157770520 -39424912 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 1788 550 279 176 35 chr1 157770616 157770872 -39424560 + B4A SINE B4 1 292 0 4 1788 241 261 67 107 chr1 157771301 157771451 -39423981 - RSINE1 SINE B4 -21 144 1 4 1788 25 0 0 0 chr1 157771896 157771921 -39423511 + AT_rich Low_complexity Low_complexity 1 25 0 4 1788 308 255 123 58 chr1 157772769 157772940 -39422492 + MIR SINE MIR 80 261 -1 4 1788 535 216 26 18 chr1 157773206 157773319 -39422113 + PB1D10 SINE Alu 3 116 -1 4 1788 1092 109 0 0 chr1 157773808 157773955 -39421477 - B1_Mus2 SINE Alu 0 147 1 4 1788 338 252 100 88 chr1 157773968 157774138 -39421294 - L1MC5 LINE L1 -71 7890 7719 4 1788 660 214 120 21 chr1 157774208 157774399 -39421033 + B3 SINE B2 7 216 0 4 1788 1099 266 76 48 chr1 157774484 157774879 -39420553 - MTD LTR MaLR 0 419 14 4 1788 278 317 0 0 chr1 157776357 157776439 -39418993 - ID4_ SINE ID 0 83 2 4 1788 1751 173 88 3 chr1 157776813 157777144 -39418288 + ORR1B2 LTR MaLR 1 359 -8 4 1788 516 217 69 48 chr1 157777334 157777479 -39417953 - B1_Mur4 SINE Alu -2 148 1 4 1788 205 283 0 0 chr1 157777499 157777559 -39417873 + A-rich Low_complexity Low_complexity 1 60 0 4 1788 42 36 0 0 chr1 157777720 157777776 -39417656 + AT_rich Low_complexity Low_complexity 1 56 0 4 1788 277 290 14 0 chr1 157777978 157778047 -39417385 + ID2 SINE ID 10 79 -4 4 1788 499 191 12 0 chr1 157778096 157778180 -39417252 + B3 SINE B2 126 210 -6 4 1788 1457 225 82 15 chr1 157779063 157779393 -39416039 + MTE2b LTR MaLR 28 379 0 4 1788 491 227 20 10 chr1 157780888 157780986 -39414446 + ID_B1 SINE B4 106 204 -20 4 1788 946 231 51 0 chr1 157781083 157781278 -39414154 + B3 SINE B2 5 209 -7 4 1788 1851 52 52 0 chr1 157781497 157781756 -39413676 + L1_Mus2 LINE L1 6324 6566 0 4 1788 556 111 20 0 chr1 157782291 157782390 -39413042 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1788 352 311 240 58 chr1 157782413 157782638 -39412794 - B4A SINE B4 -9 283 18 4 1788 21 26 0 26 chr1 157783214 157783232 -39412200 + AT_rich Low_complexity Low_complexity 1 18 0 4 1788 1061 216 14 33 chr1 157783232 157783447 -39411985 + B3 SINE B2 1 211 -5 4 1788 21 26 0 26 chr1 157783447 157783467 -39411965 + AT_rich Low_complexity Low_complexity 1 20 0 4 1788 291 194 14 69 chr1 157783549 157783621 -39411811 - RSINE1 SINE B4 -19 146 79 4 1788 566 222 51 8 chr1 157783684 157783802 -39411630 + B1F2 SINE Alu 26 148 -1 4 1788 26 30 0 0 chr1 157783806 157783839 -39411593 + AT_rich Low_complexity Low_complexity 1 33 0 4 1788 22 0 0 0 chr1 157783909 157783931 -39411501 + AT_rich Low_complexity Low_complexity 1 22 0 4 1788 1243 55 7 0 chr1 157784078 157784223 -39411209 + B1_Mus1 SINE Alu 3 148 0 4 1788 258 300 14 0 chr1 157784325 157784395 -39411037 + (TATG)n Simple_repeat Simple_repeat 4 74 0 4 1788 345 283 53 80 chr1 157784507 157784657 -39410775 - B4A SINE B4 -138 154 9 4 1788 1156 201 9 23 chr1 157784872 157785091 -39410341 + B3 SINE B2 1 216 0 4 1788 4558 8 0 0 chr1 157785414 157786003 -39409429 - L1Md_A LINE L1 -607 5975 5387 4 1788 248 244 68 126 chr1 157786003 157786106 -39409326 - RLTR25B LTR ERVK -481 547 451 4 1788 769 200 23 0 chr1 157786015 157786145 -39409287 - B1_Mur3 SINE Alu -8 141 9 4 1788 1561 78 16 0 chr1 157786394 157786586 -39408846 - B2_Mm2 SINE B2 0 195 1 4 1788 301 336 32 8 chr1 157786805 157786931 -39408501 - MIR SINE MIR -20 242 114 4 1788 1274 275 28 8 chr1 157787241 157787593 -39407839 + MTEb LTR MaLR 3 361 -18 4 1788 540 221 19 0 chr1 157788049 157788153 -39407279 + Tigger7 DNA MER2_type 30 135 -2356 4 1788 320 305 98 13 chr1 157788261 157788414 -39407018 + Tigger7 DNA MER2_type 318 483 -2008 4 1788 316 272 70 0 chr1 157788408 157788522 -39406910 + Tigger7 DNA MER2_type 2340 2461 -30 4 1788 362 324 184 47 chr1 157788893 157789977 -39405455 - L2 LINE L2 -353 3066 1834 4 1788 288 0 0 0 chr1 157790093 157790125 -39405307 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1788 328 356 67 17 chr1 157790232 157790412 -39405020 - MIRb SINE MIR -78 190 2 5 1788 763 70 0 26 chr1 157790476 157790593 -39404839 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 5 1788 24 85 0 0 chr1 157791396 157791455 -39403977 + AT_rich Low_complexity Low_complexity 1 59 0 5 1788 512 271 0 0 chr1 157791463 157791570 -39403862 - RSINE1 SINE B4 -12 153 47 5 1788 1745 252 120 15 chr1 157791644 157792259 -39403173 - L1MB7 LINE L1 -103 6081 5402 5 1788 5786 203 166 22 chr1 157792448 157793774 -39401658 + Lx6 LINE L1 17 1654 -4226 5 1788 3506 53 0 7 chr1 157793774 157794190 -39401242 + L1Md_F2 LINE L1 6168 6580 -2 5 1788 5786 159 144 53 chr1 157794190 157795194 -39400238 + Lx6 LINE L1 1655 2780 -3100 5 1788 799 58 0 0 chr1 157795194 157795298 -39400134 + Lx LINE L1 5938 6041 -613 5 1788 8733 155 36 11 chr1 157795306 157797701 -39397731 + Lx6 LINE L1 4343 6801 -659 5 1788 2057 117 0 0 chr1 157797706 157797988 -39397444 - Lx4B LINE L1 -397 6661 6380 5 1788 272 313 93 49 chr1 157798126 157798331 -39397101 - Tigger10 DNA Tigger -982 861 648 5 1788 375 23 0 0 chr1 157798426 157798470 -39396962 + (TAG)n Simple_repeat Simple_repeat 1 44 0 5 1788 798 196 42 0 chr1 157798595 157798738 -39396694 - B1_Mur4 SINE Alu 0 150 2 5 1788 343 300 0 0 chr1 157799486 157799566 -39395866 - ID4_ SINE ID -2 81 2 5 1788 449 248 63 8 chr1 157799582 157799708 -39395724 - B1F SINE Alu -8 141 9 5 1788 647 172 16 16 chr1 157799990 157800114 -39395318 + B1_Mur1 SINE Alu 24 147 -2 5 1788 206 200 75 0 chr1 157800126 157800166 -39395266 - MER5B DNA MER1_type -63 115 73 5 1788 494 257 116 11 chr1 157800920 157801101 -39394331 + L1MA8 LINE L1 6081 6280 -11 5 1788 352 305 0 10 chr1 157801235 157801331 -39394101 + PB1D10 SINE Alu 5 99 -18 5 1788 189 0 0 0 chr1 157801337 157801358 -39394074 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 5 1788 276 278 0 0 chr1 157801386 157801458 -39393974 + PB1D10 SINE Alu 37 108 -9 5 1788 654 0 0 0 chr1 157801703 157801780 -39393652 + U2 snRNA snRNA 1 77 -111 5 1788 5908 2 0 0 chr1 157801781 157802392 -39393040 + L1Md_A LINE L1 5972 6582 0 5 1788 1376 82 0 0 chr1 157802448 157802653 -39392779 + L1_Mus2 LINE L1 6381 6566 0 5 1788 505 301 42 42 chr1 157803198 157803389 -39392043 + B3A SINE B2 1 191 -7 5 1788 27 29 0 0 chr1 157803481 157803515 -39391917 + AT_rich Low_complexity Low_complexity 1 34 0 5 1788 454 309 27 148 chr1 157803696 157804034 -39391398 + ORR1E LTR MaLR 4 300 -59 5 1788 1216 98 117 15 chr1 157804036 157804242 -39391190 + RMER6A LTR ERVK 1 227 -529 5 1788 3150 96 32 0 chr1 157804256 157804770 -39390662 + MT-int LTR MaLR 1 835 -263 5 1788 198 128 0 0 chr1 157804798 157804837 -39390595 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1788 244 304 25 25 chr1 157804893 157804974 -39390458 + ID4_ SINE ID 3 83 0 5 1788 306 0 0 0 chr1 157805043 157805077 -39390355 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1788 1080 44 0 0 chr1 157805080 157805215 -39390217 - B1_Mus2 SINE Alu 0 147 13 5 1788 562 242 50 75 chr1 157805085 157805246 -39390186 - B4 SINE B4 -71 221 65 5 1788 695 242 147 72 chr1 157805267 157805601 -39389831 + ORR1E LTR MaLR 1 359 0 5 1788 254 181 214 12 chr1 157806054 157806138 -39389294 + B1F1 SINE Alu 49 149 0 5 1788 219 266 62 15 chr1 157806151 157806216 -39389216 + ID2 SINE ID 3 70 -13 5 1788 379 248 33 5 chr1 157807272 157807436 -39387996 + B3A SINE B2 5 215 -1 5 1788 1311 114 27 0 chr1 157807532 157807716 -39387716 + B2_Mm1t SINE B2 1 189 -4 5 1788 531 0 0 0 chr1 157808528 157808587 -39386845 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 5 1788 452 277 0 10 chr1 157808602 157808704 -39386728 - PB1D10 SINE Alu -11 106 6 5 1788 437 349 61 0 chr1 157808787 157808985 -39386447 - L3 LINE CR1 -280 4209 4000 5 1788 440 305 0 0 chr1 157809093 157809198 -39386234 - PB1D10 SINE Alu -12 105 1 5 1788 360 0 0 0 chr1 157809281 157809321 -39386111 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1788 451 241 0 79 chr1 157809352 157809478 -39385954 - B3A SINE B2 -79 119 4 5 1788 23 0 0 0 chr1 157809857 157809880 -39385552 + AT_rich Low_complexity Low_complexity 1 23 0 5 1788 406 215 229 8 chr1 157809993 157810124 -39385308 + RSINE1 SINE B4 2 161 -4 5 1788 825 211 14 7 chr1 157810228 157810376 -39385056 + B1_Mur1 SINE Alu 1 149 0 5 223 1612 271 76 19 chr1 157810650 157811121 -39384311 - Lx6 LINE L1 0 7460 6963 5 1789 24 0 0 0 chr1 157811199 157811223 -39384209 + AT_rich Low_complexity Low_complexity 1 24 0 5 1789 756 205 25 38 chr1 157811304 157811461 -39383971 + RSINE1 SINE B4 11 165 0 5 1789 1471 81 16 0 chr1 157811786 157811971 -39383461 + B2_Mm1t SINE B2 1 188 -5 5 1789 387 299 43 36 chr1 157812208 157812347 -39383085 + B4A SINE B4 1 140 -152 5 1789 1043 213 64 0 chr1 157813195 157813397 -39382035 + B3 SINE B2 2 216 0 5 1789 240 312 0 0 chr1 157813720 157813784 -39381648 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1789 1109 268 85 11 chr1 157813786 157814058 -39381374 - B4A SINE B4 0 292 1 5 1789 446 329 19 0 chr1 157814130 157814285 -39381147 - Lx9 LINE L1 -697 6947 6790 5 1789 525 289 104 10 chr1 157814361 157814553 -39380879 + Lx9 LINE L1 7308 7517 -127 5 1789 1302 48 7 0 chr1 157814617 157814764 -39380668 - B1_Mus1 SINE Alu 0 148 1 5 1789 919 237 145 40 chr1 157814861 157815164 -39380268 + ORR1D2 LTR MaLR 32 366 -4 5 1789 577 257 21 0 chr1 157815202 157815346 -39380086 + B1F1 SINE Alu 3 149 0 5 1789 459 233 119 8 chr1 157815360 157815494 -39379938 + B1F SINE Alu 1 149 0 5 1789 198 191 0 0 chr1 157815605 157815647 -39379785 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1789 234 0 0 0 chr1 157815647 157815673 -39379759 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1789 439 261 113 0 chr1 157815708 157815823 -39379609 - B1_Mur1 SINE Alu -21 128 1 5 1789 211 190 17 17 chr1 157815828 157815887 -39379545 + GA-rich Low_complexity Low_complexity 2 60 0 5 1789 198 276 253 35 chr1 157816051 157816280 -39379152 + L2 LINE L2 1818 2096 -1323 5 1789 245 162 0 0 chr1 157816551 157816588 -39378844 - RSINE1 SINE B4 -127 38 2 5 1789 234 281 34 79 chr1 157816707 157816796 -39378636 - MIR SINE MIR -45 223 132 5 1789 25 0 0 0 chr1 157818094 157818119 -39377313 + AT_rich Low_complexity Low_complexity 1 25 0 5 1789 201 121 0 0 chr1 157820327 157820360 -39375072 + (CGG)n Simple_repeat Simple_repeat 3 35 0 5 1789 232 194 0 195 chr1 157821141 157821218 -39374214 + L2b LINE L2 3304 3375 -12 5 1789 545 252 21 7 chr1 157821431 157821571 -39373861 + RSINE1 SINE B4 4 145 -20 5 1789 225 0 0 0 chr1 157821587 157821612 -39373820 + (CATA)n Simple_repeat Simple_repeat 3 27 0 5 1789 642 13 0 0 chr1 157821921 157821996 -39373436 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1789 302 212 197 0 chr1 157822007 157822073 -39373359 - PB1D10 SINE Alu -36 81 3 5 1789 379 233 27 0 chr1 157822458 157822531 -39372901 + B1F1 SINE Alu 1 75 -74 5 1789 199 408 0 0 chr1 157822671 157822747 -39372685 + MIRb SINE MIR 26 101 -167 5 1789 1708 82 4 4 chr1 157822757 157822989 -39372443 - MTC LTR MaLR 0 421 190 5 1789 1006 151 195 26 chr1 157822989 157823179 -39372253 + URR1A DNA MER1_type 1 222 -4 5 1789 883 230 25 137 chr1 157823183 157823505 -39371927 + MT2B LTR ERVL 312 597 -4 5 1789 501 172 0 0 chr1 157823505 157823592 -39371840 - MTC LTR MaLR -334 87 1 5 1789 518 262 28 0 chr1 157823927 157824034 -39371398 - PB1D10 SINE Alu -7 110 1 5 1789 189 121 0 0 chr1 157824044 157824077 -39371355 + (TTA)n Simple_repeat Simple_repeat 3 35 0 5 1789 25 0 0 0 chr1 157824389 157824414 -39371018 + AT_rich Low_complexity Low_complexity 1 25 0 5 1789 883 237 48 0 chr1 157824414 157824621 -39370811 + Lx8 LINE L1 4777 4993 -887 5 1789 802 188 15 22 chr1 157824628 157824770 -39370662 + B3 SINE B2 5 150 -43 5 1789 369 58 0 0 chr1 157824770 157824822 -39370610 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1789 509 195 106 112 chr1 157824822 157824858 -39370574 + B2_Mm1t SINE B2 151 182 -11 5 1789 1132 121 0 13 chr1 157824858 157825009 -39370423 + B1_Mur3 SINE Alu 1 149 0 5 1789 3527 43 0 5 chr1 157825033 157825431 -39370001 - MTA_Mm LTR MaLR 0 396 1 5 1789 760 231 141 11 chr1 157825486 157825670 -39369762 + B3 SINE B2 6 213 -3 5 1789 2247 271 69 40 chr1 157825672 157826897 -39368535 + Lx8 LINE L1 5142 6398 -1075 5 1789 2882 33 0 0 chr1 157826897 157827229 -39368203 + L1Md_F2 LINE L1 5255 5586 -297 5 1789 8738 41 1 1 chr1 157827229 157828213 -39367219 + L1Md_F2 LINE L1 5587 6570 -12 5 1789 1594 279 58 15 chr1 157828213 157828733 -39366699 + Lx8 LINE L1 6385 6926 -547 5 1789 1043 89 6 110 chr1 157828733 157828897 -39366535 + B1_Mus1 SINE Alu 2 148 0 5 1789 330 87 0 0 chr1 157828897 157828943 -39366489 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 5 1789 408 324 80 27 chr1 157828945 157829170 -39366262 + Lx8 LINE L1 6905 7141 -332 5 1789 1198 71 0 0 chr1 157829172 157829312 -39366120 - B1_Mus1 SINE Alu -8 140 1 5 1789 264 106 43 0 chr1 157829446 157829493 -39365939 - B3 SINE B2 -6 210 162 5 1789 402 289 40 32 chr1 157829610 157829735 -39365697 + RSINE1 SINE B4 38 163 -2 5 1789 302 312 0 30 chr1 157829735 157829834 -39365598 + L1M5 LINE L1 5425 5520 -720 5 1789 862 19 0 0 chr1 157829952 157830059 -39365373 - RLTRETN_Mm LTR ERVK -215 107 1 5 1789 794 287 10 10 chr1 157830069 157830266 -39365166 - Charlie10a DNA MER1_type -44 236 40 5 1789 236 321 69 35 chr1 157830458 157830545 -39364887 + PB1D7 SINE Alu 23 112 -8 5 1789 3415 39 0 0 chr1 157830554 157830937 -39364495 + L1_Mus1 LINE L1 6185 6567 0 6 1789 281 309 122 10 chr1 157831090 157831188 -39364244 - ID_B1 SINE B4 -32 192 84 6 1789 273 269 194 0 chr1 157831267 157831360 -39364072 - ID_B1 SINE B4 -111 113 3 6 1789 31 0 0 0 chr1 157831438 157831469 -39363963 + AT_rich Low_complexity Low_complexity 1 31 0 6 1789 440 277 0 26 chr1 157831480 157831595 -39363837 - B1F SINE Alu -5 144 33 6 1789 343 181 0 65 chr1 157832040 157832117 -39363315 + ID4 SINE ID 1 72 -11 6 1789 632 316 60 30 chr1 157832447 157832794 -39362638 + ORR1E LTR MaLR 1 379 0 6 1789 303 256 83 24 chr1 157832928 157833012 -39362420 + PB1D10 SINE Alu 9 97 -52 6 1789 216 216 0 0 chr1 157833034 157833085 -39362347 + GA-rich Low_complexity Low_complexity 2 52 0 6 1789 1072 155 61 20 chr1 157833174 157833372 -39362060 - B3 SINE B2 -10 206 1 6 1789 432 307 67 44 chr1 157833387 157833612 -39361820 + MLT1G1 LTR MaLR 46 275 -304 6 1789 494 265 243 0 chr1 157833767 157833952 -39361480 - MLT2D LTR ERVL -76 338 109 6 1789 313 213 40 0 chr1 157833973 157834048 -39361384 - ID_B1 SINE B4 -2 222 145 6 1789 384 281 0 0 chr1 157834092 157834181 -39361251 - B1F SINE Alu -56 93 5 6 1789 534 31 0 0 chr1 157834221 157834285 -39361147 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1789 1607 134 0 0 chr1 157834721 157834968 -39360464 - ORR1A2 LTR MaLR -68 259 13 6 1789 502 174 147 0 chr1 157835047 157835156 -39360276 - B1_Mur2 SINE Alu 0 149 25 6 1789 300 291 126 59 chr1 157835049 157835184 -39360248 - B4 SINE B4 -69 223 80 6 1789 595 232 105 7 chr1 157835180 157835332 -39360100 - B3 SINE B2 0 216 50 6 1789 398 256 0 90 chr1 157835501 157835634 -39359798 - ID_B1 SINE B4 0 224 104 6 1789 324 0 0 0 chr1 157835643 157835679 -39359753 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1789 1123 82 0 0 chr1 157835679 157835826 -39359606 - B1_Mus1 SINE Alu 0 148 2 6 1789 194 91 30 0 chr1 157836111 157836144 -39359288 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 6 1789 315 0 0 0 chr1 157836277 157836312 -39359120 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1789 288 0 0 0 chr1 157836312 157836343 -39359089 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1789 473 205 0 0 chr1 157836370 157836453 -39358979 - ID4_ SINE ID 0 83 1 6 1789 423 184 20 10 chr1 157838109 157838208 -39357224 + PB1D9 SINE Alu 21 120 0 6 1789 437 191 11 22 chr1 157838247 157838338 -39357094 + B3A SINE B2 2 91 -107 6 1789 302 45 23 0 chr1 157838362 157838406 -39357026 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1789 936 242 41 0 chr1 157838450 157838644 -39356788 - B3 SINE B2 -10 206 5 6 1789 810 135 53 0 chr1 157838689 157838822 -39356610 + B1_Mur3 SINE Alu 10 149 0 6 1789 529 285 26 32 chr1 157838889 157839045 -39356387 - ID_B1 SINE B4 0 224 70 6 1789 297 0 0 0 chr1 157839087 157839120 -39356312 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1789 248 301 124 54 chr1 157839130 157839316 -39356116 - MIR3 SINE MIR -58 210 10 6 1789 203 147 0 0 chr1 157839455 157839489 -39355943 + (G)n Simple_repeat Simple_repeat 1 34 0 6 1789 506 241 119 8 chr1 157839807 157839941 -39355491 + B1_Mur1 SINE Alu 1 149 0 6 1789 1342 74 28 0 chr1 157839954 157840130 -39355302 + B2_Mm2 SINE B2 1 181 -14 6 1789 709 73 21 0 chr1 157840130 157840226 -39355206 - L1_Mm LINE L1 -1406 4477 4380 6 1789 4344 65 2 7 chr1 157840226 157840784 -39354648 + L1_Mus1 LINE L1 6013 6567 0 6 1789 750 189 178 0 chr1 157840822 157841002 -39354430 - B3 SINE B2 -4 212 1 6 1789 1413 85 0 16 chr1 157841264 157841455 -39353977 + B2_Mm2 SINE B2 1 188 -7 6 1789 342 0 0 0 chr1 157841525 157841563 -39353869 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1789 369 0 0 0 chr1 157841563 157841603 -39353829 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1789 219 384 0 48 chr1 157841772 157841876 -39353556 + MIRc SINE MIR 65 163 -105 6 1789 24 0 0 0 chr1 157842176 157842200 -39353232 + AT_rich Low_complexity Low_complexity 1 24 0 6 1789 321 285 104 16 chr1 157842541 157842666 -39352766 - RSINE1 SINE B4 0 165 30 6 1789 450 36 0 0 chr1 157843113 157843169 -39352263 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1789 857 126 27 27 chr1 157843220 157843367 -39352065 - B1_Mur4 SINE Alu 0 150 4 6 1789 331 210 49 0 chr1 157843378 157843459 -39351973 - B4A SINE B4 -207 85 1 6 1789 326 336 68 32 chr1 157843667 157843888 -39351544 - RMER15 LTR ERVL 0 575 347 6 1789 953 96 15 7 chr1 157844387 157844524 -39350908 + B1_Mur4 SINE Alu 3 140 -10 6 1789 185 0 0 39 chr1 157844524 157844550 -39350882 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1789 284 307 0 0 chr1 157844615 157844690 -39350742 - B2_Mm2 SINE B2 -119 76 2 6 1789 666 161 38 61 chr1 157844739 157844871 -39350561 - B1_Mur1 SINE Alu -20 129 1 6 1789 913 195 56 15 chr1 157844892 157845090 -39350342 - B3 SINE B2 -7 209 4 6 1789 1279 212 54 18 chr1 157845870 157846148 -39349284 - B4A SINE B4 -4 288 1 6 1789 429 284 91 132 chr1 157846343 157847048 -39348384 - L1M2 LINE L1 -1508 4635 3960 6 1789 485 215 90 16 chr1 157847053 157847191 -39348241 - PB1D7 SINE Alu -4 146 7 6 1789 620 243 87 70 chr1 157847196 157847541 -39347891 - L1M2 LINE L1 -2212 3931 3581 6 1789 33 25 0 0 chr1 157847633 157847673 -39347759 + AT_rich Low_complexity Low_complexity 1 40 0 6 1789 1214 61 0 0 chr1 157847674 157847821 -39347611 - B1_Mus2 SINE Alu 0 147 1 6 1789 407 268 32 6 chr1 157847824 157848007 -39347425 - B3 SINE B2 -6 210 1 6 1789 289 295 9 62 chr1 157848011 157848123 -39347309 - PB1D7 SINE Alu 0 120 15 6 1789 1207 34 7 0 chr1 157848555 157848701 -39346731 + B1_Mus2 SINE Alu 1 147 0 6 1789 234 0 0 0 chr1 157848765 157848791 -39346641 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1789 504 0 0 0 chr1 157848791 157848846 -39346586 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1789 1290 103 16 0 chr1 157848940 157849125 -39346307 + B2_Mm2 SINE B2 3 190 -5 6 1789 265 282 0 13 chr1 157849824 157849903 -39345529 - ID4 SINE ID -3 80 3 6 1789 503 289 65 26 chr1 157850066 157850219 -39345213 + RSINE1 SINE B4 1 159 -6 6 1789 40 37 0 0 chr1 157850219 157850273 -39345159 + AT_rich Low_complexity Low_complexity 1 54 0 6 1789 2481 211 106 68 chr1 157850275 157851100 -39344332 - RMER1B Other Other -26 1040 56 6 1789 324 64 0 0 chr1 157851191 157851238 -39344194 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1789 1158 49 28 0 chr1 157851526 157851669 -39343763 + B1_Mus2 SINE Alu 1 147 0 6 1789 266 0 0 29 chr1 157851669 157851704 -39343728 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1789 317 277 22 37 chr1 157852406 157852541 -39342891 + G-rich Low_complexity Low_complexity 2 134 0 6 1789 327 287 170 36 chr1 157852543 157852655 -39342777 - B1F SINE Alu -12 137 11 6 1789 222 37 0 0 chr1 157852767 157852794 -39342638 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 1789 293 272 0 80 chr1 157853002 157853102 -39342330 - PB1D10 SINE Alu -10 107 16 6 1789 271 324 141 27 chr1 157853023 157853172 -39342260 - ID_B1 SINE B4 -53 171 6 6 1789 505 230 27 61 chr1 157853308 157853456 -39341976 - ID_B1 SINE B4 -1 223 81 6 1789 450 284 84 24 chr1 157854906 157855072 -39340360 - B3A SINE B2 -22 176 1 6 1789 380 263 116 0 chr1 157855084 157855179 -39340253 - B1_Mur1 SINE Alu -43 106 1 6 1789 1257 41 0 0 chr1 157855243 157855390 -39340042 + B1_Mm SINE Alu 1 147 0 6 1789 408 181 53 39 chr1 157856182 157856294 -39339138 + PB1D9 SINE Alu 13 120 0 6 1789 2009 58 0 8 chr1 157856496 157856755 -39338677 - L1Md_F2 LINE L1 -12 6570 6314 6 1789 226 280 50 62 chr1 157856785 157856865 -39338567 + ID4_ SINE ID 2 80 -3 6 1789 724 283 108 14 chr1 157856970 157857267 -39338165 + Charlie1a DNA MER1_type 384 708 -747 6 1789 420 246 26 52 chr1 157857284 157857333 -39338099 - RSINE1 SINE B4 -51 114 68 6 1789 2887 69 58 0 chr1 157857333 157857711 -39337721 + MTB LTR MaLR 1 400 0 6 1789 420 246 26 52 chr1 157857711 157857777 -39337655 - RSINE1 SINE B4 -98 67 2 6 1789 233 214 0 0 chr1 157857866 157857908 -39337524 - B4A SINE B4 -164 128 87 6 1789 241 240 66 13 chr1 157857931 157858007 -39337425 + Charlie1a DNA MER1_type 714 793 -662 6 1789 658 195 8 8 chr1 157858015 157858139 -39337293 - B1F2 SINE Alu -1 148 25 6 1789 261 140 40 0 chr1 157858237 157858287 -39337145 + Charlie1a DNA MER1_type 781 832 -623 6 1789 544 282 0 0 chr1 157858331 157858448 -39336984 + ID_B1 SINE B4 98 214 -10 6 1789 342 0 0 0 chr1 157858448 157858486 -39336946 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1789 902 281 140 20 chr1 157858801 157858950 -39336482 - Lx9 LINE L1 -1721 5923 5718 6 1789 252 0 0 0 chr1 157858950 157858978 -39336454 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1789 902 274 155 19 chr1 157858978 157859241 -39336191 - Lx9 LINE L1 -130 5717 5424 6 1789 742 208 38 9 chr1 157859417 157859602 -39335830 + L1M2 LINE L1 5606 5800 -378 6 1789 1240 48 0 0 chr1 157859608 157859755 -39335677 + B1_Mus1 SINE Alu 2 148 0 6 1789 361 250 31 92 chr1 157860059 157860222 -39335210 - RSINE1 SINE B4 -10 155 3 6 1789 372 22 0 0 chr1 157860997 157861042 -39334390 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1789 1067 82 0 0 chr1 157861789 157861924 -39333508 + B1_Mus1 SINE Alu 2 136 -12 6 1789 495 0 0 0 chr1 157861924 157861979 -39333453 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 6 1789 221 0 0 33 chr1 157862494 157862524 -39332908 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1789 232 215 0 110 chr1 157862540 157862613 -39332819 + B1F1 SINE Alu 82 146 -3 7 1789 358 313 108 18 chr1 157862663 157862829 -39332603 + B3A SINE B2 1 181 -17 7 1789 540 278 96 45 chr1 157862838 157863015 -39332417 + B3A SINE B2 2 187 -11 7 1789 484 168 9 47 chr1 157863208 157863314 -39332118 + B1_Mur4 SINE Alu 49 150 0 7 1789 183 100 0 0 chr1 157863407 157863437 -39331995 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 7 1789 608 131 112 0 chr1 157863440 157863547 -39331885 - PB1D9 SINE Alu 0 120 2 7 1789 244 289 49 66 chr1 157863773 157863895 -39331537 + PB1D7 SINE Alu 1 120 0 7 1789 274 290 0 0 chr1 157864027 157864089 -39331343 - ID4 SINE ID -18 65 4 7 1789 441 119 83 0 chr1 157864177 157864261 -39331171 - B2_Mm2 SINE B2 -14 181 91 7 1789 324 0 0 0 chr1 157864396 157864432 -39331000 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1789 712 187 82 0 chr1 157865149 157865283 -39330149 - B1_Mus2 SINE Alu -1 146 2 7 1789 564 254 130 0 chr1 157865524 157865693 -39329739 - B3A SINE B2 -2 196 6 7 1789 279 0 0 0 chr1 157865695 157865726 -39329706 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1789 1138 68 7 0 chr1 157865726 157865873 -39329559 - B1_Mus1 SINE Alu 0 148 1 7 1789 214 297 81 0 chr1 157865972 157866046 -39329386 + ID4 SINE ID 4 83 0 7 1789 741 244 175 36 chr1 157866076 157866356 -39329076 + ORR1D2 LTR MaLR 1 319 -51 7 1789 269 153 306 0 chr1 157866356 157866428 -39329004 + URR1A DNA MER1_type 1 94 -132 7 1789 1198 29 0 0 chr1 157867392 157867529 -39327903 + B1_Mus2 SINE Alu 1 137 -10 7 1789 217 0 29 29 chr1 157867529 157867563 -39327869 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1789 497 278 33 43 chr1 157867582 157867766 -39327666 + Lx8 LINE L1 7137 7318 -155 7 1789 212 288 24 105 chr1 157868047 157868171 -39327261 + PB1D10 SINE Alu 3 116 -1 7 1789 647 250 7 28 chr1 157868318 157868462 -39326970 - B1_Mur1 SINE Alu -7 142 2 7 1789 1570 52 5 0 chr1 157868627 157868819 -39326613 - B2_Mm1a SINE B2 0 193 1 7 1789 207 0 0 0 chr1 157869023 157869046 -39326386 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1789 1248 41 0 0 chr1 157869046 157869193 -39326239 - B1_Mm SINE Alu 0 147 1 7 1789 21 36 0 0 chr1 157869351 157869379 -39326053 + AT_rich Low_complexity Low_complexity 1 28 0 7 1789 519 245 97 0 chr1 157870523 157870678 -39324754 - B3A SINE B2 -28 170 1 7 1789 694 226 30 8 chr1 157870700 157870834 -39324598 - B1_Mur1 SINE Alu -5 144 8 7 1789 1542 63 11 0 chr1 157870875 157871064 -39324368 + B2_Mm1t SINE B2 1 191 -2 7 1789 470 360 0 0 chr1 157871212 157871348 -39324084 - ID_B1 SINE B4 -7 217 82 7 1789 200 182 0 0 chr1 157871836 157871869 -39323563 + CT-rich Low_complexity Low_complexity 2 34 0 7 1789 860 126 52 0 chr1 157871873 157872008 -39323424 - B1_Mur4 SINE Alu -6 144 3 7 1789 349 281 9 46 chr1 157872928 157873036 -39322396 + PB1D10 SINE Alu 6 109 -8 7 1789 279 320 39 0 chr1 157873200 157873328 -39322104 - RSINE1 SINE B4 -31 134 2 7 1789 392 222 0 0 chr1 157873360 157873432 -39322000 - PB1D9 SINE Alu -48 72 1 7 1789 265 287 99 0 chr1 157873729 157873830 -39321602 - PB1D10 SINE Alu -6 111 1 7 1789 356 254 132 35 chr1 157874032 157874146 -39321286 + RSINE1 SINE B4 3 127 -38 7 1789 414 85 0 0 chr1 157874147 157874206 -39321226 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1789 1083 95 0 0 chr1 157874403 157874551 -39320881 - B1_Mus1 SINE Alu 0 148 1 7 1789 1089 57 158 0 chr1 157874652 157874810 -39320622 + B2_Mm2 SINE B2 1 183 -12 7 1789 393 87 316 97 chr1 157874839 157874953 -39320479 + B2_Mm2 SINE B2 47 185 -10 7 1789 259 183 67 0 chr1 157874982 157875042 -39320390 - PB1D10 SINE Alu -30 87 24 7 1789 180 125 0 0 chr1 157875241 157875273 -39320159 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 7 1789 781 222 132 0 chr1 157875407 157875596 -39319836 + B3 SINE B2 2 215 -1 7 1789 420 256 59 52 chr1 157875708 157875844 -39319588 - B1F SINE Alu -6 143 7 7 1789 493 203 81 14 chr1 157875881 157876024 -39319408 + ID_B1 SINE B4 74 222 -2 7 1789 732 277 43 18 chr1 157876433 157876697 -39318735 - B4A SINE B4 -14 278 1 7 1789 1005 52 0 0 chr1 157876888 157877022 -39318410 + B1_Mm SINE Alu 14 147 0 7 1789 240 143 0 0 chr1 157877022 157877064 -39318368 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1789 251 293 13 0 chr1 157877263 157877338 -39318094 + ID2 SINE ID 7 82 -1 7 1789 352 35 53 0 chr1 157877863 157877920 -39317512 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 7 1789 274 273 30 0 chr1 157878171 157878237 -39317195 + ID4 SINE ID 15 82 -1 7 1789 417 259 58 33 chr1 157878336 157878456 -39316976 - ID_B1 SINE B4 -20 204 82 7 1789 317 294 0 81 chr1 157878902 157879013 -39316419 + ID_B1 SINE B4 121 222 -2 7 1789 374 274 10 19 chr1 157879178 157879282 -39316150 - PB1D10 SINE Alu -6 111 9 7 1789 294 254 0 0 chr1 157879232 157879291 -39316141 - ID_B1 SINE B4 -85 139 81 7 1789 1249 47 0 0 chr1 157879447 157879595 -39315837 - B1_Mus1 SINE Alu 0 148 1 7 1789 573 242 31 37 chr1 157879675 157879838 -39315594 + RSINE1 SINE B4 4 165 0 7 1789 344 284 40 85 chr1 157879893 157880070 -39315362 + MER104 DNA Tc2 13 181 0 7 1789 1211 41 7 0 chr1 157880230 157880376 -39315056 + B1_Mus2 SINE Alu 1 147 0 7 1789 204 367 56 0 chr1 157880392 157880482 -39314950 + MIRb SINE MIR 47 141 -127 7 1789 923 131 0 20 chr1 157880641 157880789 -39314643 - B1_Mur3 SINE Alu -4 145 1 7 1789 568 249 122 16 chr1 157881103 157881283 -39314149 + B3A SINE B2 2 191 -25 7 1789 1026 73 91 6 chr1 157881357 157881522 -39313910 + L1_Mus3 LINE L1 6454 6632 -6 7 1789 237 65 0 0 chr1 157882469 157882500 -39312932 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1789 34 72 0 0 chr1 157882791 157882860 -39312572 + GC_rich Low_complexity Low_complexity 1 69 0 7 1789 243 0 0 0 chr1 157884391 157884418 -39311014 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1789 527 206 56 0 chr1 157884448 157884555 -39310877 - B1_Mur3 SINE Alu -34 115 3 7 1789 922 178 35 0 chr1 157885563 157885732 -39309700 - B3 SINE B2 -15 201 27 7 1789 623 254 0 43 chr1 157885769 157885909 -39309523 - ID_B1 SINE B4 -7 217 84 7 1789 216 0 0 0 chr1 157885980 157886004 -39309428 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1789 1259 34 0 0 chr1 157886004 157886151 -39309281 - B1_Mm SINE Alu 0 147 1 7 1789 361 277 50 14 chr1 157886185 157886324 -39309108 + B3 SINE B2 65 208 -8 7 1789 723 126 181 0 chr1 157886359 157886486 -39308946 - B1_Mur4 SINE Alu 0 150 1 7 1789 372 302 59 20 chr1 157886627 157886649 -39308783 + ID_B1 SINE B4 67 224 0 7 1789 729 154 77 0 chr1 157886649 157886779 -39308653 + B1_Mur4 SINE Alu 11 150 0 7 1789 510 206 0 19 chr1 157886797 157886901 -39308531 + PB1D9 SINE Alu 19 120 0 7 1789 230 211 206 24 chr1 157887019 157887145 -39308287 + B1F1 SINE Alu 1 149 0 7 1789 387 177 34 54 chr1 157887177 157887289 -39308143 - B2_Mm2 SINE B2 -82 116 2 7 1789 1062 92 12 0 chr1 157887294 157887457 -39307975 - B2_Mm1t SINE B2 -27 166 2 7 1789 329 242 15 0 chr1 157887463 157887529 -39307903 - PB1D9 SINE Alu -49 71 5 7 1789 538 196 10 0 chr1 157888736 157888838 -39306594 - PB1D9 SINE Alu -13 107 5 7 1789 180 0 0 0 chr1 157888891 157888911 -39306521 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1789 321 321 65 14 chr1 157889332 157889471 -39305961 - B1_Mm SINE Alu -1 146 1 7 1789 313 264 0 42 chr1 157890586 157890608 -39304824 + ID_B1 SINE B4 134 224 0 7 1789 518 70 0 14 chr1 157890608 157890681 -39304751 + B1_Mur4 SINE Alu 78 149 -1 7 1789 478 222 22 0 chr1 157890704 157890794 -39304638 - B1_Mur3 SINE Alu -37 112 21 7 1789 315 330 86 9 chr1 157891145 157891261 -39304171 + PB1 SINE Alu 1 125 -2 7 1789 295 247 75 0 chr1 157891285 157891378 -39304054 + L1MC4a LINE L1 6913 7012 -870 7 1789 602 30 0 0 chr1 157891382 157891449 -39303983 + SSU-rRNA_Hsa rRNA rRNA 1251 1317 -552 7 1789 819 269 108 28 chr1 157891529 157891953 -39303479 + L1MC4a LINE L1 7125 7582 -300 7 1789 660 193 169 24 chr1 157892267 157892474 -39302958 + L1MC4a LINE L1 7634 7870 -12 7 1789 380 106 14 96 chr1 157892516 157892589 -39302843 + B1_Mur1 SINE Alu 68 134 -15 7 1789 259 271 55 48 chr1 157892669 157892694 -39302738 + ID SINE ID 67 80 -144 7 1789 372 196 51 61 chr1 157892694 157892792 -39302640 + PB1D9 SINE Alu 4 100 -20 7 1789 759 92 244 0 chr1 157892797 157892916 -39302516 + B1_Mus1 SINE Alu 1 148 0 7 1789 410 219 115 0 chr1 157892987 157893083 -39302349 + PB1D10 SINE Alu 6 112 -5 7 1789 235 253 94 24 chr1 157893137 157893222 -39302210 + PB1D7 SINE Alu 24 114 -6 7 1789 1269 84 44 22 chr1 157893484 157893667 -39301765 + B2_Mm2 SINE B2 1 187 -8 7 1789 518 229 200 0 chr1 157894394 157894569 -39300863 - B3 SINE B2 -6 210 1 7 1789 689 233 7 14 chr1 157894641 157894789 -39300643 + B1_Mur1 SINE Alu 1 147 -2 7 1789 625 51 0 0 chr1 157894831 157894909 -39300523 + B2_Mm2 SINE B2 1 78 -117 7 1789 306 330 10 0 chr1 157894909 157894928 -39300504 + RSINE1 SINE B4 2 99 -66 8 1789 614 251 118 17 chr1 157894922 157895087 -39300345 + ID_B1 SINE B4 8 190 -34 8 1789 700 237 31 43 chr1 157895087 157895250 -39300182 + B3 SINE B2 2 162 -54 8 1789 307 245 0 0 chr1 157895984 157896037 -39299395 + ID4 SINE ID 17 69 -14 8 1789 1162 51 0 0 chr1 157896271 157896408 -39299024 - B1_Mus2 SINE Alu -10 137 1 8 1789 273 336 132 15 chr1 157896862 157896998 -39298434 - L2 LINE L2 -3112 307 156 8 1789 1222 48 7 0 chr1 157897998 157898144 -39297288 - B1_Mus1 SINE Alu 0 148 2 8 1789 412 196 3 22 chr1 157899473 157899583 -39295849 - ID4 SINE ID -36 116 10 8 1789 548 182 30 0 chr1 157902054 157902153 -39293279 - B1_Mur3 SINE Alu -45 104 3 8 1789 312 188 50 141 chr1 157902072 157902171 -39293261 - MT2B LTR ERVL -361 240 151 8 1789 489 147 189 0 chr1 157902549 157902644 -39292788 + B1_Mur1 SINE Alu 1 113 -36 8 1789 305 266 0 15 chr1 157903705 157903770 -39291662 - B4A SINE B4 -221 71 8 8 1789 548 232 72 0 chr1 157904272 157904410 -39291022 - B1F SINE Alu -1 148 1 8 1789 379 233 233 0 chr1 157905086 157905206 -39290226 + B1F1 SINE Alu 2 149 0 8 1789 273 170 0 19 chr1 157905230 157905284 -39290148 + ID4 SINE ID 8 60 -23 8 1789 243 296 32 74 chr1 157905428 157905523 -39289909 - RSINE1 SINE B4 -5 160 70 8 1789 309 267 13 0 chr1 157905557 157905632 -39289800 - ID4 SINE ID -3 80 5 8 1789 180 111 0 0 chr1 157906895 157906922 -39288510 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 8 1789 1156 82 0 0 chr1 157906922 157907069 -39288363 - B1_Mus1 SINE Alu 0 148 2 8 1789 528 205 0 0 chr1 157907253 157907419 -39288013 + (TG)n Simple_repeat Simple_repeat 1 166 0 8 1789 388 310 90 0 chr1 157907536 157907681 -39287751 - RSINE1 SINE B4 -7 158 1 8 1789 313 280 41 119 chr1 157907905 157907945 -39287487 + L1MC5 LINE L1 7617 7653 -308 8 1789 1554 37 16 0 chr1 157907945 157908133 -39287299 - B2_Mm2 SINE B2 -3 192 2 8 1789 313 280 41 119 chr1 157908133 157908311 -39287121 + L1MC5 LINE L1 7654 7818 -143 8 1789 472 234 0 36 chr1 157908327 157908438 -39286994 - PB1D10 SINE Alu -2 115 9 8 1789 222 37 0 0 chr1 157908468 157908495 -39286937 + (TTA)n Simple_repeat Simple_repeat 1 27 0 8 1789 267 31 0 0 chr1 157909460 157909492 -39285940 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1789 556 307 7 0 chr1 157909492 157909632 -39285800 - RSINE1 SINE B4 -22 143 3 8 1789 1074 218 10 0 chr1 157909657 157909863 -39285569 - B3 SINE B2 -8 208 1 8 1789 521 259 13 16 chr1 157910064 157910198 -39285234 - PB1D7 SINE Alu -15 134 3 8 1789 334 270 176 60 chr1 157910083 157910277 -39285155 - ID_B1 SINE B4 -3 221 17 8 1789 227 158 52 13 chr1 157910919 157910996 -39284436 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 1789 213 209 0 0 chr1 157911056 157911099 -39284333 - ID4 SINE ID -28 55 13 8 1789 412 321 0 0 chr1 157911158 157911270 -39284162 - B1F1 SINE Alu 0 149 38 8 1789 361 228 211 0 chr1 157911590 157911698 -39283734 - PB1D7 SINE Alu -13 136 16 8 1789 1129 76 0 14 chr1 157913028 157913175 -39282257 - B1_Mus1 SINE Alu -2 146 2 8 1789 459 313 0 26 chr1 157914424 157914575 -39280857 - B1F1 SINE Alu -2 147 1 8 1789 21 71 0 0 chr1 157914820 157914862 -39280570 + AT_rich Low_complexity Low_complexity 1 42 0 8 1789 250 263 134 21 chr1 157914939 157915036 -39280396 - BC1_Mm scRNA scRNA -44 108 1 8 1789 253 317 125 0 chr1 157915090 157915194 -39280238 - PB1D10 SINE Alu 0 117 1 8 1789 270 325 123 0 chr1 157916295 157916409 -39279023 + B4A SINE B4 1 128 -164 8 1789 216 0 0 0 chr1 157916411 157916435 -39278997 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1789 678 238 98 68 chr1 157916444 157916679 -39278753 + B4 SINE B4 2 243 -49 8 1789 228 111 0 0 chr1 157916680 157916716 -39278716 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 8 1789 957 41 0 8 chr1 157917007 157917129 -39278303 - B1_Mus1 SINE Alu -1 147 27 8 1789 541 243 58 121 chr1 157917424 157917590 -39277842 + B3A SINE B2 3 160 -35 8 1789 204 40 0 0 chr1 157917590 157917615 -39277817 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1789 454 243 58 121 chr1 157917615 157917654 -39277778 + B2_Mm2 SINE B2 161 195 0 8 1789 376 225 0 0 chr1 157917778 157917849 -39277583 + B3A SINE B2 1 71 -127 8 1789 190 290 20 79 chr1 157918348 157918449 -39276983 + MIRb SINE MIR 107 201 -67 8 1789 1201 61 0 0 chr1 157918470 157918617 -39276815 + B1_Mus2 SINE Alu 1 147 0 8 1789 1112 55 7 40 chr1 157919081 157919233 -39276199 - B1_Mus1 SINE Alu 0 148 2 8 1789 626 232 7 7 chr1 157920521 157920660 -39274772 - B1_Mus2 SINE Alu -8 139 1 8 1789 221 0 0 33 chr1 157920873 157920903 -39274529 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 8 1789 1128 96 0 0 chr1 157921007 157921153 -39274279 - B1_Mus2 SINE Alu 0 147 2 8 1789 228 243 80 13 chr1 157921547 157921622 -39273810 + RLTR41 LTR ERV1 306 385 -61 8 1789 588 178 23 61 chr1 157921979 157922111 -39273321 - B1_Mur3 SINE Alu -2 147 21 8 1789 298 242 0 120 chr1 157922030 157922138 -39273294 - MT2B LTR ERVL -344 257 163 8 1789 766 226 75 28 chr1 157923884 157924098 -39271334 - ID_B1 SINE B4 0 224 1 8 1789 321 311 78 19 chr1 157924606 157924760 -39270672 + L1M4b LINE L1 2211 2373 -4961 8 1789 24 0 0 0 chr1 157926679 157926703 -39268729 + GC_rich Low_complexity Low_complexity 1 24 0 8 1789 189 0 0 0 chr1 157926861 157926882 -39268550 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 8 1789 198 103 0 0 chr1 157927441 157927470 -39267962 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1789 897 284 26 112 chr1 157927487 157927558 -39267874 - B4 SINE B4 0 292 219 8 1789 696 174 79 14 chr1 157927558 157927698 -39267734 - B1_Mur3 SINE Alu 0 149 1 8 1789 423 0 0 0 chr1 157927704 157927751 -39267681 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1789 897 284 26 112 chr1 157927751 157927985 -39267447 - B4 SINE B4 -78 214 8 8 1789 208 359 8 79 chr1 157928036 157928163 -39267269 - MIRb SINE MIR -32 236 119 8 1789 1082 266 67 37 chr1 157928820 157929222 -39266210 + BGLII_B LTR ERVK 1 414 -27 8 1789 273 272 126 49 chr1 157929284 157929394 -39266038 + MER5A1 DNA MER1_type 4 125 -41 8 1789 1608 42 5 0 chr1 157929394 157929584 -39265848 + B2_Mm1a SINE B2 1 191 -2 8 1789 273 272 126 49 chr1 157929584 157929616 -39265816 + MER5A1 DNA MER1_type 126 157 -9 8 1789 402 21 0 0 chr1 157930196 157930243 -39265189 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1789 878 261 120 93 chr1 157930472 157930954 -39264478 + RLTR12B LTR ERVK 1 495 -33 8 1789 843 216 7 58 chr1 157931294 157931514 -39263918 - B3 SINE B2 -19 197 8 8 1789 246 279 57 0 chr1 157931693 157931851 -39263581 + (ACCTG)n Simple_repeat Simple_repeat 3 169 0 8 1789 3756 103 51 35 chr1 157932158 157932763 -39262669 - Lx LINE L1 -1 6653 6039 8 1789 1239 47 0 7 chr1 157932770 157932919 -39262513 - B1_Mus1 SINE Alu 0 148 1 8 1789 514 148 20 0 chr1 157933425 157933526 -39261906 + CT-rich Low_complexity Low_complexity 2 104 0 8 1789 772 151 7 7 chr1 157933548 157933695 -39261737 + CT-rich Low_complexity Low_complexity 2 148 0 8 1789 182 37 37 0 chr1 157933696 157933723 -39261709 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 8 1789 500 269 61 8 chr1 157933723 157933854 -39261578 - B1F1 SINE Alu -5 144 7 8 1789 342 0 0 0 chr1 157933959 157933997 -39261435 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1789 477 337 77 108 chr1 157933998 157934517 -39260915 + MLT1F2 LTR MaLR 58 560 0 8 1789 22 0 0 0 chr1 157934534 157934556 -39260876 + AT_rich Low_complexity Low_complexity 1 22 0 8 1789 1207 55 7 0 chr1 157936398 157936544 -39258888 - B1_Mus2 SINE Alu 0 147 1 8 1789 229 262 81 0 chr1 157936571 157936652 -39258780 - MIRc SINE MIR -55 153 67 8 1789 234 200 0 0 chr1 157937834 157937879 -39257553 - MTEb LTR MaLR -334 45 1 8 1789 692 201 170 12 chr1 157937879 157938050 -39257382 - MTEb-int LTR MaLR 0 1580 1383 8 1789 507 33 0 0 chr1 157938067 157938128 -39257304 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1789 264 171 83 24 chr1 157938148 157938232 -39257200 + RLTR12A LTR ERVK 265 353 -215 8 1789 748 316 88 10 chr1 157938540 157938847 -39256585 + ORR1D1 LTR MaLR 3 333 -41 8 1789 694 264 18 6 chr1 157938871 157939039 -39256393 - B4A SINE B4 0 292 123 8 1789 526 290 82 107 chr1 157939482 157939867 -39255565 + L1M2 LINE L1 2629 3043 -3097 8 1789 568 209 340 0 chr1 157939867 157940020 -39255412 + B3 SINE B2 1 205 -11 8 1789 526 290 82 107 chr1 157940020 157940050 -39255382 + L1M2 LINE L1 3044 3059 -3081 8 1789 481 258 73 78 chr1 157940050 157940256 -39255176 + B3 SINE B2 4 208 -8 8 1789 552 275 62 7 chr1 157940256 157940473 -39254959 + L1M2 LINE L1 3023 3246 -2894 8 1789 227 250 0 18 chr1 157941017 157941074 -39254358 + G-rich Low_complexity Low_complexity 1 56 0 8 1789 330 308 33 11 chr1 157941395 157941487 -39253945 - B3 SINE B2 -5 211 118 8 223 782 241 33 66 chr1 157941499 157941864 -39253568 - RMER10A LTR ERVL -19 423 50 8 1790 579 40 0 0 chr1 157942341 157942415 -39253017 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1790 276 289 13 0 chr1 157942842 157942918 -39252514 - ID_B1 SINE B4 -6 218 142 8 1790 823 132 7 44 chr1 157942922 157943057 -39252375 - B1_Mur3 SINE Alu -1 148 19 8 1790 383 206 0 191 chr1 157942967 157943093 -39252339 - MT2B LTR ERVL -344 257 156 8 1790 1109 113 55 22 chr1 157943119 157943300 -39252132 - B2_Mm2 SINE B2 -7 188 2 8 1790 302 267 0 0 chr1 157943300 157943360 -39252072 - ID_B1 SINE B4 -67 157 98 8 1790 331 269 5 37 chr1 157943503 157943631 -39251801 + PB1D9 SINE Alu 7 127 0 8 1790 747 182 45 0 chr1 157943640 157943772 -39251660 + B1_Mur1 SINE Alu 3 140 -9 8 1790 252 0 0 0 chr1 157943772 157943800 -39251632 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1790 869 263 151 8 chr1 157943870 157944115 -39251317 + B4 SINE B4 9 288 -4 9 1790 233 318 88 33 chr1 157944071 157944162 -39251270 + B3 SINE B2 115 210 -6 9 1790 243 0 0 0 chr1 157944336 157944363 -39251069 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1790 419 293 50 7 chr1 157944394 157944535 -39250897 - B4A SINE B4 -42 250 104 9 1790 924 216 16 5 chr1 157944653 157944839 -39250593 - MTEb LTR MaLR -191 188 1 9 1790 640 231 23 24 chr1 157944849 157945025 -39250407 + B3 SINE B2 15 187 -8 9 1790 609 221 7 73 chr1 157945950 157945975 -39249457 - RSINE1 SINE B4 0 165 144 9 1790 414 0 0 0 chr1 157945975 157946021 -39249411 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1790 609 221 7 73 chr1 157946021 157946132 -39249300 - RSINE1 SINE B4 -22 143 38 9 1790 1170 177 63 197 chr1 157946431 157946873 -39248559 - ORR1C2 LTR MaLR 0 384 2 9 1790 197 264 19 0 chr1 157946874 157946927 -39248505 + L3 LINE CR1 4167 4220 -269 9 1790 452 266 18 0 chr1 157947240 157947349 -39248083 - PB1D7 SINE Alu 0 120 10 9 1790 219 36 0 0 chr1 157947359 157947387 -39248045 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 9 1790 509 232 33 161 chr1 157947396 157947493 -39247939 - B4 SINE B4 -72 220 136 9 1790 2949 83 59 24 chr1 157947493 157947952 -39247480 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1790 1112 54 0 58 chr1 157947952 157948002 -39247430 - B1_Mus1 SINE Alu -97 51 2 9 1790 509 232 33 161 chr1 157948002 157948034 -39247398 - B4 SINE B4 -157 135 64 9 1790 1022 202 78 39 chr1 157948249 157948265 -39247167 + B3 SINE B2 1 16 -200 9 1790 2155 90 24 59 chr1 157948265 157948606 -39246826 - ORR1A4 LTR MaLR 0 329 1 9 1790 1022 202 78 39 chr1 157948606 157948795 -39246637 + B3 SINE B2 17 214 -2 9 1790 340 291 47 0 chr1 157948855 157948941 -39246491 - MIRc SINE MIR -115 153 64 9 1790 1918 143 106 6 chr1 157948947 157949278 -39246154 - ORR1C2 LTR MaLR -19 365 2 9 1790 725 69 30 0 chr1 157949515 157949616 -39245816 - BC1_Mm scRNA scRNA -48 104 1 9 1790 311 241 138 0 chr1 157949628 157949715 -39245717 + B1F SINE Alu 45 143 -6 9 1790 226 250 15 15 chr1 157949717 157949782 -39245650 + ID4_ SINE ID 5 69 -14 9 1790 301 273 11 22 chr1 157949961 157950051 -39245381 - MER115 DNA Tip100 -258 435 347 9 1790 702 137 177 0 chr1 157950568 157950692 -39244740 + B1_Mus2 SINE Alu 2 147 0 9 1790 799 113 121 0 chr1 157950722 157950846 -39244586 + B1_Mur4 SINE Alu 1 139 -11 9 1790 789 158 87 27 chr1 157951267 157951417 -39244015 - B2_Mm2 SINE B2 -32 163 5 9 1790 856 237 17 6 chr1 157951422 157951596 -39243836 + MTE2b LTR MaLR 204 379 0 9 1790 1863 187 63 8 chr1 157951738 157951792 -39243640 + ORR1B1 LTR MaLR 1 59 -335 9 1790 1108 109 0 0 chr1 157951792 157951939 -39243493 - B1_Mus1 SINE Alu 0 148 2 9 1790 1863 187 63 8 chr1 157951939 157952250 -39243182 + ORR1B1 LTR MaLR 60 385 -9 9 1790 414 0 0 0 chr1 157952785 157952831 -39242601 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1790 259 200 195 23 chr1 157953097 157953184 -39242248 - Lx8 LINE L1 -2 7471 7370 9 1790 226 333 0 0 chr1 157953263 157953332 -39242100 + RMER30 DNA MER1_type 133 201 -1 9 1790 228 349 0 0 chr1 157953490 157953556 -39241876 + L2c LINE L2 3296 3361 -26 9 1790 1093 75 6 64 chr1 157954173 157954330 -39241102 - B1_Mus1 SINE Alu 0 148 1 9 1790 607 301 86 89 chr1 157954394 157954463 -39240969 - B4A SINE B4 0 292 231 9 1790 629 271 52 0 chr1 157954463 157954618 -39240814 - RSINE1 SINE B4 0 165 3 9 1790 607 301 86 89 chr1 157954618 157954840 -39240592 - B4A SINE B4 -62 230 2 9 1790 355 188 154 43 chr1 157954862 157954979 -39240453 + L1M5 LINE L1 5461 5590 -534 9 1790 471 232 9 26 chr1 157955321 157955436 -39239996 - PB1D10 SINE Alu 0 117 5 9 1790 234 176 0 56 chr1 157955851 157955905 -39239527 + G-rich Low_complexity Low_complexity 4 54 0 9 1790 1305 96 11 0 chr1 157956417 157956605 -39238827 - B2_Mm1t SINE B2 -2 191 2 9 1790 1249 41 0 0 chr1 157956627 157956773 -39238659 - B1_Mm SINE Alu 0 147 2 9 1790 1991 202 166 10 chr1 157956778 157957358 -39238074 - Lx9 LINE L1 -1 7643 6974 9 1790 1148 74 7 0 chr1 157957362 157957511 -39237921 - B2_Mm1t SINE B2 -43 150 1 9 1790 279 104 0 0 chr1 157957638 157957686 -39237746 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 1790 353 164 44 15 chr1 157957686 157957754 -39237678 - ID4_ SINE ID -10 73 4 9 1790 267 31 0 0 chr1 157957782 157957814 -39237618 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1790 464 237 41 103 chr1 157957935 157958081 -39237351 - B4A SINE B4 -151 141 5 9 1790 202 111 0 69 chr1 157958094 157958152 -39237280 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 9 1790 629 173 7 142 chr1 157958169 157958317 -39237115 - B1_Mur3 SINE Alu -21 128 1 9 1790 341 287 0 60 chr1 157958317 157958361 -39237071 - B4 SINE B4 -207 85 48 9 1790 275 264 220 13 chr1 157960034 157960184 -39235248 - MER5A DNA MER1_type -2 187 7 9 1790 297 0 0 0 chr1 157960310 157960343 -39235089 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 1790 241 241 22 98 chr1 157961380 157961424 -39234008 + LTR86A2 LTR ERVL 1 37 -471 9 1790 1296 71 0 6 chr1 157961424 157961593 -39233839 + B2_Mm2 SINE B2 1 168 -27 9 1790 199 367 38 0 chr1 157962646 157962725 -39232707 - L4 LINE RTE -172 1857 1776 9 1790 2639 133 30 23 chr1 157962726 157963157 -39232275 - RMER4A LTR ERVK 0 466 33 9 1790 207 69 0 0 chr1 157963159 157963188 -39232244 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 9 1790 1184 75 0 0 chr1 157963188 157963335 -39232097 - B1_Mus1 SINE Alu 0 148 2 9 1790 311 87 0 0 chr1 157963336 157963382 -39232050 - RMER4A LTR ERVK -420 46 1 9 1790 211 296 66 57 chr1 157963829 157963846 -39231586 - B1_Mur2 SINE Alu -15 134 117 9 1790 825 222 97 56 chr1 157963846 157964113 -39231319 - B4 SINE B4 -14 278 1 9 1790 371 296 66 57 chr1 157964113 157964217 -39231215 - PB1D10 SINE Alu -33 116 12 9 1790 610 165 129 38 chr1 157964260 157964392 -39231040 - B1_Mur2 SINE Alu -1 148 5 9 1790 1237 164 77 5 chr1 157964552 157964760 -39230672 + URR1A DNA MER1_type 1 223 -3 9 1790 1487 68 26 5 chr1 157964779 157964970 -39230462 + B2_Mm2 SINE B2 1 195 0 9 1790 217 70 22 44 chr1 157965160 157965205 -39230227 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 9 1790 237 247 52 0 chr1 157965576 157965653 -39229779 + L1MB3 LINE L1 6054 6134 -49 9 1790 181 390 49 0 chr1 157965713 157965795 -39229637 - L4 LINE RTE -735 1294 1209 9 1790 355 52 17 17 chr1 157965813 157965872 -39229560 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1791 645 171 23 11 chr1 158099188 158099365 -39096067 + CT-rich Low_complexity Low_complexity 2 180 0 1 1791 250 266 5 176 chr1 158099424 158099466 -39095966 + ID_B1 SINE B4 65 219 -5 2 1791 404 246 28 76 chr1 158099466 158099611 -39095821 + B1F2 SINE Alu 7 144 -5 3 1791 276 291 35 0 chr1 158100134 158100220 -39095212 - L1MD1 LINE L1 -213 6146 6058 4 1791 564 244 79 0 chr1 158100228 158100355 -39095077 - ID_B1 SINE B4 0 224 88 5 1791 323 253 11 10 chr1 158100361 158100478 -39094954 - L1MD1 LINE L1 -1781 6004 5891 4 1791 729 343 54 86 chr1 158100483 158100946 -39094486 + MLT1J LTR MaLR 65 512 0 6 1791 382 307 132 6 chr1 158100998 158101165 -39094267 - MER5A DNA MER1_type 0 189 2 7 1791 2671 150 15 82 chr1 158102256 158102734 -39092698 + RLTR41 LTR ERV1 1 446 0 8 1791 275 273 0 61 chr1 158102739 158102821 -39092611 - B4A SINE B4 -4 288 212 9 1791 1887 184 48 50 chr1 158103066 158103484 -39091948 - MTD LTR MaLR 0 419 3 1 1791 306 275 62 82 chr1 158104115 158104309 -39091123 - L2c LINE L2 -176 3211 3022 1 1791 978 176 86 25 chr1 158104337 158104535 -39090897 - B3 SINE B2 0 216 7 1 1791 533 260 31 0 chr1 158105027 158105154 -39090278 - ID_B1 SINE B4 -6 218 88 1 1791 306 359 0 30 chr1 158105552 158105684 -39089748 + B4A SINE B4 146 273 -19 1 1791 1080 278 49 34 chr1 158106036 158106319 -39089113 + L1MB2 LINE L1 5733 6023 -148 1 1791 1446 138 32 5 chr1 158106319 158106538 -39088894 + URR1A DNA MER1_type 1 225 -1 1 1791 1080 278 49 34 chr1 158106538 158106641 -39088791 + L1MB2 LINE L1 6024 6125 -46 1 1791 845 176 0 6 chr1 158106656 158106811 -39088621 + (TATTG)n Simple_repeat Simple_repeat 1 155 0 1 1791 3099 23 3 0 chr1 158106811 158107156 -39088276 + ORR1A1 LTR MaLR 1 346 0 1 1791 845 176 0 6 chr1 158107156 158107177 -39088255 + (TATTG)n Simple_repeat Simple_repeat 5 25 0 1 1791 451 255 57 0 chr1 158107183 158107289 -39088143 - PB1D10 SINE Alu -2 115 4 2 1791 3814 273 112 19 chr1 158107399 158109279 -39086153 - Lx8 LINE L1 -2 7471 5359 2 1791 771 225 17 23 chr1 158109290 158109463 -39085969 - B3A SINE B2 -26 172 1 2 1791 209 83 28 0 chr1 158110791 158110827 -39084605 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2 1791 709 202 16 0 chr1 158110828 158110957 -39084475 - B1_Mur3 SINE Alu -8 141 11 2 1791 330 299 133 52 chr1 158111194 158111367 -39084065 + B4 SINE B4 13 199 -93 2 1791 615 33 11 22 chr1 158111472 158111564 -39083868 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1791 323 200 44 56 chr1 158112111 158112201 -39083231 + MER34A1 LTR ERV1 11 99 -488 2 1791 369 295 0 0 chr1 158112339 158112417 -39083015 + ID4 SINE ID 5 82 -1 2 1791 252 0 0 0 chr1 158112421 158112449 -39082983 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 1791 580 306 83 32 chr1 158112492 158112769 -39082663 + B4A SINE B4 2 292 0 3 1791 182 114 114 0 chr1 158112908 158112996 -39082436 + (TATG)n Simple_repeat Simple_repeat 2 99 0 3 1791 283 336 71 32 chr1 158114033 158114159 -39081273 + MIRb SINE MIR 102 232 -36 3 1791 207 125 0 0 chr1 158114163 158114203 -39081229 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1791 282 73 0 0 chr1 158114203 158114244 -39081188 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1791 248 364 14 41 chr1 158115057 158115203 -39080229 - YREP_Mm Unknown Unknown -1476 336 195 3 1791 671 216 9 0 chr1 158115079 158115204 -39080228 + ID_B1 SINE B4 84 205 -19 3 1791 848 239 35 20 chr1 158115291 158115492 -39079940 + ID_B1 SINE B4 3 206 -18 3 1791 1680 208 69 14 chr1 158115549 158115895 -39079537 + MTE2b LTR MaLR 1 365 -14 3 1791 2350 148 168 15 chr1 158116216 158116867 -39078565 - RMER6A LTR ERVK 0 756 1 3 1791 507 298 127 0 chr1 158117585 158117743 -39077689 + B4 SINE B4 14 191 -101 4 1791 1349 105 11 0 chr1 158118035 158118226 -39077206 - B2_Mm1t SINE B2 0 193 1 4 1791 921 268 20 10 chr1 158118233 158118433 -39076999 - ID_B1 SINE B4 -4 220 19 4 1791 338 233 0 88 chr1 158118369 158118449 -39076983 - ID4 SINE ID -2 81 9 4 1791 202 320 120 0 chr1 158118512 158118612 -39076820 + L2a LINE L2 3047 3158 -268 4 1791 369 244 97 69 chr1 158118701 158118846 -39076586 + MER20 DNA MER1_type 8 156 -63 4 1791 336 268 103 0 chr1 158118881 158118978 -39076454 + L2a LINE L2 3313 3419 -7 4 1791 240 343 59 0 chr1 158118999 158119101 -39076331 + MamRep38 DNA hAT 51 158 -137 4 1791 2172 163 65 22 chr1 158119450 158119852 -39075580 + MTC LTR MaLR 1 419 -2 4 1791 1201 200 5 23 chr1 158119937 158120157 -39075275 + B3 SINE B2 1 216 0 4 1791 378 225 0 48 chr1 158120900 158120984 -39074448 + B3 SINE B2 34 113 -103 4 1791 206 293 24 96 chr1 158121565 158121648 -39073784 + L2c LINE L2 3285 3361 -26 5 1791 609 254 28 7 chr1 158121878 158122021 -39073411 - B1_Mm SINE Alu -1 146 1 5 1791 197 386 40 20 chr1 158122561 158122709 -39072723 + L2b LINE L2 2790 2940 -479 5 1791 239 320 172 30 chr1 158122839 158123071 -39072361 + L2b LINE L2 3110 3374 -1 5 1791 486 135 40 0 chr1 158123287 158123361 -39072071 - RMER16-int LTR ERVK -174 5232 5156 5 1791 396 0 0 0 chr1 158123375 158123419 -39072013 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1791 212 271 13 91 chr1 158123472 158123549 -39071883 - MIRm SINE MIR -6 270 200 5 1791 2786 64 5 13 chr1 158123859 158124237 -39071195 - L1_Mus2 LINE L1 0 6566 6192 5 1791 327 314 114 18 chr1 158124492 158124719 -39070713 - L1M3 LINE L1 -1140 5000 4752 5 1791 351 0 0 0 chr1 158124840 158124879 -39070553 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 5 1791 483 333 0 52 chr1 158124898 158125053 -39070379 - RSINE1 SINE B4 -17 148 2 5 1791 293 148 0 32 chr1 158125068 158125131 -39070301 + CT-rich Low_complexity Low_complexity 1 61 0 6 1791 1005 142 0 0 chr1 158125131 158125300 -39070132 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 6 1791 832 125 62 0 chr1 158125305 158125316 -39070116 - B1_Mus1 SINE Alu -12 136 126 6 1791 315 0 0 0 chr1 158125316 158125351 -39070081 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1791 832 125 62 0 chr1 158125351 158125467 -39069965 - B1_Mus1 SINE Alu -23 125 2 6 1791 336 284 85 0 chr1 158125512 158125653 -39069779 + L1M3 LINE L1 4174 4326 -1814 6 1791 466 236 70 8 chr1 158125648 158125776 -39069656 - L1M3 LINE L1 -1592 4548 4413 5 1791 525 129 0 0 chr1 158125787 158125880 -39069552 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1791 646 278 91 23 chr1 158125937 158126202 -39069230 + B4A SINE B4 2 284 -8 6 1791 262 287 81 106 chr1 158126271 158126431 -39069001 - RMER12 LTR ERVK -466 856 701 6 1791 405 218 0 0 chr1 158126444 158126550 -39068882 - L1M3 LINE L1 -1928 4218 4113 5 1791 441 265 72 78 chr1 158126676 158126856 -39068576 - B4 SINE B4 -113 179 1 6 1791 185 184 0 26 chr1 158126856 158126895 -39068537 + L2 LINE L2 2793 2830 -589 6 1791 449 250 119 20 chr1 158126906 158127057 -39068375 - MTEa LTR MaLR -13 366 201 7 1791 252 259 35 12 chr1 158127062 158127148 -39068284 + G-rich Low_complexity Low_complexity 6 93 0 7 1791 292 318 73 29 chr1 158127150 158127286 -39068146 - MLT2B5 LTR ERVL -335 266 125 7 1791 585 264 58 58 chr1 158127194 158127367 -39068065 - MTEa LTR MaLR -199 180 8 7 1791 403 335 35 17 chr1 158127883 158128056 -39067376 + Charlie22a DNA MER1_type 10 185 -306 7 1791 334 143 29 39 chr1 158128903 158129005 -39066427 + GA-rich Low_complexity Low_complexity 2 102 0 7 1791 628 228 136 25 chr1 158130554 158130716 -39064716 - B3A SINE B2 -18 180 1 7 1791 1967 153 67 14 chr1 158130737 158131095 -39064337 + ORR1C1 LTR MaLR 2 378 0 7 1791 374 330 65 56 chr1 158131683 158131933 -39063499 - L1MC4a LINE L1 -2039 5843 5591 7 1791 2305 89 41 6 chr1 158131933 158132248 -39063184 + ORR1A3 LTR MaLR 1 326 0 7 1791 374 331 62 49 chr1 158132248 158132372 -39063060 - L1MC4a LINE L1 -533 5591 5464 7 1791 279 79 0 0 chr1 158132383 158132421 -39063011 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1791 211 302 57 23 chr1 158132645 158132733 -39062699 + MIRb SINE MIR 68 158 -110 8 1791 210 208 20 20 chr1 158132731 158132780 -39062652 + L2c LINE L2 3318 3366 -21 8 1791 438 69 0 0 chr1 158135735 158135793 -39059639 + (TATG)n Simple_repeat Simple_repeat 2 59 0 8 1791 554 154 22 0 chr1 158135815 158135906 -39059526 - RSINE1 SINE B4 -55 110 18 8 1791 525 270 0 0 chr1 158136934 158137045 -39058387 - B3A SINE B2 -86 112 2 8 1791 683 245 79 70 chr1 158137077 158137292 -39058140 + ID_B1 SINE B4 3 219 -5 8 1791 511 267 71 11 chr1 158137340 158137522 -39057910 - L1MD1 LINE L1 -80 6162 5970 8 1791 574 314 114 33 chr1 158137581 158137940 -39057492 - L1MD1 LINE L1 -364 5878 5491 8 1791 387 0 0 0 chr1 158138365 158138408 -39057024 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1791 360 43 0 0 chr1 158138408 158138454 -39056978 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1791 561 223 29 11 chr1 158138454 158138602 -39056830 - RLTR20B1 LTR ERVK -89 474 316 8 1791 22 35 0 0 chr1 158138626 158138655 -39056777 + AT_rich Low_complexity Low_complexity 1 29 0 9 1791 928 174 70 25 chr1 158138655 158138855 -39056577 - ORR1D1 LTR MaLR 0 374 166 9 1791 676 130 50 0 chr1 158138855 158139016 -39056416 + GA-rich Low_complexity Low_complexity 1 169 0 9 1791 534 177 33 66 chr1 158139051 158139172 -39056260 - ORR1D1 LTR MaLR -255 119 3 9 1791 428 209 67 116 chr1 158139191 158139407 -39056025 - L1M2 LINE L1 -804 5508 5323 9 1791 359 264 16 40 chr1 158139407 158139533 -39055899 - L1M2 LINE L1 -1496 4647 4525 9 1791 233 244 0 0 chr1 158139533 158139578 -39055854 - ID4 SINE ID -20 63 19 9 1791 189 0 0 0 chr1 158139775 158139796 -39055636 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 1791 852 155 49 0 chr1 158139813 158139955 -39055477 - B1_Mur4 SINE Alu -1 149 1 9 1791 2322 170 77 9 chr1 158140023 158140467 -39054965 + RLTR20B1 LTR ERVK 1 474 -89 9 1791 772 285 62 55 chr1 158140607 158140794 -39054638 - L1MD1 LINE L1 -2527 3619 3424 8 1791 1695 31 0 0 chr1 158140794 158140986 -39054446 - B2_Mm1t SINE B2 0 193 2 9 1791 772 285 62 55 chr1 158140986 158141232 -39054200 - L1MD1 LINE L1 -2723 3423 3183 8 1791 245 250 0 0 chr1 158141338 158141386 -39054046 - PB1D10 SINE Alu -22 95 48 9 1791 380 254 7 113 chr1 158141479 158141630 -39053802 - L1MD1 LINE L1 -3022 3124 2990 8 1791 333 333 15 15 chr1 158141630 158141761 -39053671 - B4A SINE B4 -153 139 9 1 1791 815 328 59 12 chr1 158141850 158142189 -39053243 + MLT1A0 LTR MaLR 5 359 -6 1 1791 401 283 109 88 chr1 158142401 158142684 -39052748 + MER46C DNA MER2_type 1 289 -49 1 1791 460 319 12 19 chr1 158142684 158142844 -39052588 - RMER15 LTR ERVL -14 561 403 1 1791 826 214 42 69 chr1 158144224 158144440 -39050992 - B3A SINE B2 -4 212 3 1 1791 1127 57 7 0 chr1 158144613 158144753 -39050679 - B1_Mm SINE Alu 0 147 7 1 1791 624 211 35 106 chr1 158144615 158144785 -39050647 - B4 SINE B4 -69 223 66 1 1791 265 272 117 50 chr1 158144832 158144952 -39050480 + B4A SINE B4 26 153 -139 1 1791 249 33 0 0 chr1 158145178 158145208 -39050224 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1791 390 184 0 13 chr1 158145891 158145968 -39049464 + B3A SINE B2 3 78 -120 1 1791 219 136 0 48 chr1 158146843 158146905 -39048527 + C-rich Low_complexity Low_complexity 4 62 0 1 1791 650 191 88 7 chr1 158146934 158147071 -39048361 - B1_Mus1 SINE Alu 0 148 1 1 1791 891 256 73 66 chr1 158147500 158147529 -39047903 - B4 SINE B4 -1 291 263 1 1791 467 82 0 14 chr1 158147529 158147603 -39047829 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1791 891 256 73 66 chr1 158147603 158147862 -39047570 - B4 SINE B4 -30 262 1 1 1791 714 182 149 44 chr1 158147907 158148174 -39047258 - MTD LTR MaLR 0 421 66 1 1791 506 279 14 0 chr1 158148995 158149135 -39046297 + B1F1 SINE Alu 2 143 -6 1 1791 787 260 98 8 chr1 158149506 158149770 -39045662 + B4A SINE B4 2 289 -3 1 1791 621 293 106 46 chr1 158149829 158150047 -39045385 - B4 SINE B4 -30 262 32 1 1791 1485 73 0 5 chr1 158150212 158150405 -39045027 + B2_Mm2 SINE B2 4 195 0 1 1791 1627 193 34 12 chr1 158150792 158151118 -39044314 - Lx5 LINE L1 -2 7048 6716 1 1791 402 256 0 33 chr1 158151178 158151360 -39044072 + (CATA)n Simple_repeat Simple_repeat 1 176 0 1 1791 243 360 0 43 chr1 158153049 158153165 -39042267 - PB1D7 SINE Alu -8 112 2 1 1791 3126 81 2 0 chr1 158154045 158154442 -39040990 + MTB LTR MaLR 1 398 -2 1 1791 334 219 16 0 chr1 158154442 158154506 -39040926 - MTD LTR MaLR -340 79 15 1 1791 345 294 27 7 chr1 158155264 158155411 -39040021 - L1M4 LINE L1 -1676 4470 4321 1 1791 1682 133 108 4 chr1 158155413 158155743 -39039689 + ORR1A4 LTR MaLR 8 329 0 1 1791 487 275 68 83 chr1 158155789 158156055 -39039377 - L1M4 LINE L1 -2003 4143 3882 1 1791 716 234 222 16 chr1 158156188 158156480 -39038952 - ORR1D2 LTR MaLR 0 370 4 1 1791 25 0 0 0 chr1 158156925 158156950 -39038482 + AT_rich Low_complexity Low_complexity 1 25 0 1 1791 1085 187 59 5 chr1 158156951 158157155 -39038277 - B3 SINE B2 -1 215 1 1 1791 248 302 14 144 chr1 158157515 158157654 -39037778 + MLT2D LTR ERVL 111 231 -183 1 1791 252 320 139 57 chr1 158157957 158158166 -39037266 + LTR78 LTR ERV1 977 1202 -102 1 1791 560 295 86 19 chr1 158158425 158158681 -39036751 - B4A SINE B4 -18 274 2 1 1791 2565 134 42 5 chr1 158158807 158159213 -39036219 - MTC LTR MaLR 0 421 1 1 1791 606 268 0 0 chr1 158159343 158159485 -39035947 + B1F SINE Alu 1 142 -7 1 1791 552 291 19 45 chr1 158160183 158160338 -39035094 - RSINE1 SINE B4 -2 163 13 1 1791 23 0 0 0 chr1 158160363 158160386 -39035046 + AT_rich Low_complexity Low_complexity 1 23 0 1 1791 2280 130 43 139 chr1 158161339 158161548 -39033884 + MTC LTR MaLR 1 209 -212 1 1791 1177 61 0 7 chr1 158161548 158161696 -39033736 + B1_Mm SINE Alu 1 147 0 1 1791 2280 130 43 139 chr1 158161696 158161952 -39033480 + MTC LTR MaLR 210 421 0 1 1791 4889 154 91 24 chr1 158161952 158162342 -39033090 + MTC-int LTR MaLR 3 443 -815 1 1791 234 0 0 0 chr1 158162342 158162368 -39033064 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1791 4889 154 91 24 chr1 158162368 158162972 -39032460 + MTC-int LTR MaLR 444 1063 -195 1 1791 724 237 179 4 chr1 158162974 158163203 -39032229 - Lx7 LINE L1 0 7696 7428 1 1791 1430 153 44 88 chr1 158163209 158163503 -39031929 - Lx7 LINE L1 -740 6956 6676 1 1791 1521 171 10 9 chr1 158163503 158163797 -39031635 - RLTR1 LTR ERV1 0 624 216 1 1791 3852 196 60 18 chr1 158164039 158164822 -39030610 - Lx6 LINE L1 -792 6668 5853 1 1791 3975 161 50 38 chr1 158164818 158165072 -39030360 - L1_Mur3 LINE L1 -1830 4050 3825 1 1791 2210 134 9 3 chr1 158165072 158165416 -39030016 - ORR1A1 LTR MaLR 0 346 1 1 1791 3975 161 50 38 chr1 158165416 158165987 -39029445 - L1_Mur3 LINE L1 -2056 3824 3215 1 1791 380 177 102 24 chr1 158165992 158166007 -39029425 - L1_Mur3 LINE L1 -3412 2468 2453 1 1791 2024 115 20 159 chr1 158166007 158166460 -39028972 + ORR1B1 LTR MaLR 2 391 -3 1 1791 380 177 102 24 chr1 158166460 158166571 -39028861 - L1_Mur3 LINE L1 -3428 2452 2334 1 1791 315 0 0 0 chr1 158166589 158166624 -39028808 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1791 787 165 0 45 chr1 158166631 158166764 -39028668 - B3 SINE B2 -88 128 2 1 1791 555 135 83 0 chr1 158166788 158166884 -39028548 + L1_Mur3 LINE L1 2269 2372 -3508 1 1791 1907 193 145 11 chr1 158166911 158167388 -39028044 - L1_Mur3 LINE L1 -6908 820 280 1 1791 361 152 67 236 chr1 158167388 158167488 -39027944 + MTC-int LTR MaLR 1037 1134 -124 1 1791 183 42 0 0 chr1 158167488 158167512 -39027920 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1791 1169 62 7 0 chr1 158167514 158167658 -39027774 - B1_Mus2 SINE Alu -1 146 2 1 1791 361 152 67 236 chr1 158167658 158167685 -39027747 + MTC-int LTR MaLR 1135 1150 -108 1 1791 872 156 228 0 chr1 158167685 158167852 -39027580 - B3 SINE B2 -11 205 1 1 1791 361 152 67 236 chr1 158167852 158167987 -39027445 + MTC-int LTR MaLR 1151 1258 0 1 1791 714 144 124 0 chr1 158167987 158168140 -39027292 + MTC LTR MaLR 1 172 -249 1 1791 248 101 41 0 chr1 158168396 158168461 -39026971 - L2b LINE L2 -439 2980 2913 1 1791 2400 29 0 0 chr1 158168461 158168733 -39026699 + L1Md_F2 LINE L1 5315 5586 -297 1 1791 8332 37 1 1 chr1 158168734 158169748 -39025684 + L1Md_F2 LINE L1 5588 6582 0 1 1791 333 200 88 0 chr1 158170661 158170741 -39024691 + MTE2b LTR MaLR 1 87 -292 1 1791 612 308 125 42 chr1 158170728 158171185 -39024247 + MT2A LTR ERVL 36 530 -3 1 1791 198 163 40 20 chr1 158171252 158171302 -39024130 + MIR SINE MIR 91 141 -121 1 1791 450 0 0 0 chr1 158172950 158173000 -39022432 + (TATG)n Simple_repeat Simple_repeat 4 53 0 1 1791 210 184 0 58 chr1 158173052 158173104 -39022328 + MER5B DNA MER1_type 80 128 -50 1 1791 823 247 158 41 chr1 158173454 158174027 -39021405 - L1M4c LINE L1 -552 5984 5327 1 1791 898 206 133 9 chr1 158174053 158174264 -39021168 - Lx7 LINE L1 -492 7204 6968 1 1791 976 97 32 0 chr1 158174302 158174457 -39020975 - B2_Mm2 SINE B2 -1 194 35 1 1791 420 236 200 52 chr1 158174484 158174734 -39020698 - L1M4c LINE L1 -2892 3490 3204 1 1791 586 200 24 0 chr1 158175076 158175201 -39020231 - RLTR14 LTR ERV1 0 382 255 1 1791 250 111 22 0 chr1 158175190 158175235 -39020197 - RLTR14 LTR ERV1 -336 46 1 1 1791 1175 75 0 0 chr1 158175349 158175508 -39019924 + B2_Mm2 SINE B2 1 159 -36 1 1791 213 39 0 0 chr1 158175508 158175534 -39019898 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1791 1493 178 22 51 chr1 158175864 158176235 -39019197 - MT2A LTR ERVL -118 483 10 1 1791 2236 79 6 6 chr1 158176415 158176734 -39018698 + ORR1A2 LTR MaLR 1 319 -8 1 1791 621 278 169 43 chr1 158176738 158177175 -39018257 - Lx7 LINE L1 -515 7181 6690 1 1791 262 281 21 86 chr1 158177297 158177437 -39017995 - L1M4c LINE L1 -3863 2513 2383 1 1791 286 305 32 0 chr1 158177644 158177739 -39017693 - L1M4c LINE L1 -4647 1737 1640 1 1791 463 294 61 17 chr1 158177746 158177926 -39017506 + B3A SINE B2 3 190 -8 1 1791 223 262 94 28 chr1 158177935 158178041 -39017391 - B2_Mm1t SINE B2 -14 179 67 1 1791 320 298 28 65 chr1 158178075 158178253 -39017179 - L1M4c LINE L1 -899 1844 1527 1 1791 650 259 45 22 chr1 158179083 158179261 -39016171 + B3 SINE B2 1 182 -34 1 1791 1298 94 33 0 chr1 158179556 158179736 -39015696 - B2_Mm2 SINE B2 -9 186 1 1 1791 236 174 70 28 chr1 158180056 158180127 -39015305 - L1M5 LINE L1 -279 5900 5827 1 1791 1168 48 7 0 chr1 158180594 158180739 -39014693 + B1_Mus2 SINE Alu 2 147 0 1 1791 240 35 0 0 chr1 158180739 158180768 -39014664 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1791 2555 111 41 5 chr1 158181314 158181703 -39013729 + RLTR9D LTR ERVK 1 403 0 1 1791 605 235 15 0 chr1 158181898 158182034 -39013398 - B1F SINE Alu -2 147 10 1 1791 3473 20 5 0 chr1 158183212 158183606 -39011826 + MTA_Mm LTR MaLR 1 396 0 1 1791 1486 125 302 0 chr1 158184352 158184647 -39010785 + ORR1C2 LTR MaLR 1 384 0 1 1791 2227 214 127 13 chr1 158184647 158185333 -39010099 + ORR1C2-int LTR MaLR 1 764 -606 1 1791 252 77 0 0 chr1 158185474 158185513 -39009919 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1791 1237 222 190 37 chr1 158186539 158187058 -39008374 - RCHARR1 DNA MER1_type -14 960 362 1 1791 884 242 95 36 chr1 158187213 158187448 -39007984 - RCHARR1 DNA MER1_type -600 374 124 1 1791 718 207 60 49 chr1 158187448 158187631 -39007801 + B2_Mm2 SINE B2 1 185 -10 1 1791 884 242 95 36 chr1 158187631 158187699 -39007733 - RCHARR1 DNA MER1_type -851 123 53 1 1791 227 324 45 18 chr1 158187824 158187934 -39007498 + ID_B1 SINE B4 86 198 -26 1 1791 1337 260 99 23 chr1 158188537 158189060 -39006372 + RLTR20A2 LTR ERVK 4 566 -12 1 1791 232 288 38 0 chr1 158189396 158189476 -39005956 + L1M4 LINE L1 5582 5664 -514 1 1791 509 210 20 0 chr1 158190335 158190435 -39004997 + L1M4 LINE L1 5518 5619 -559 1 1791 686 218 307 7 chr1 158191602 158191897 -39003535 + ORR1C2 LTR MaLR 1 384 0 1 1791 236 256 201 37 chr1 158191911 158192045 -39003387 + MIR SINE MIR 88 243 -19 1 1791 1206 39 6 0 chr1 158194476 158194632 -39000800 + B2_Mm2 SINE B2 2 158 -37 1 1791 192 77 0 0 chr1 158194633 158194659 -39000773 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1791 318 274 58 25 chr1 158194757 158194877 -39000555 - MTE-int LTR MaLR -67 1513 1390 1 1791 385 189 14 0 chr1 158195300 158195374 -39000058 + PB1D9 SINE Alu 46 120 0 1 1791 250 275 49 16 chr1 158195377 158195499 -38999933 - MTE-int LTR MaLR -219 1361 1236 1 1791 535 276 87 150 chr1 158195561 158196089 -38999343 + L1MD1 LINE L1 5402 5896 -346 1 1791 291 296 21 10 chr1 158196169 158196311 -38999121 + L1ME1 LINE L1 6016 6160 -1625 1 1791 254 209 0 29 chr1 158196529 158196598 -38998834 + Lx7 LINE L1 7611 7677 -19 1 1791 22 35 0 0 chr1 158196830 158196859 -38998573 + AT_rich Low_complexity Low_complexity 1 29 0 1 1791 334 0 0 0 chr1 158197145 158197191 -38998241 - L1Md_T LINE L1 0 6582 6537 1 1791 3065 164 62 53 chr1 158198235 158199141 -38996291 - RLTR13D1 LTR ERVK 0 855 1 1 1791 984 217 34 5 chr1 158199155 158199359 -38996073 + B3 SINE B2 1 210 -6 1 1791 917 222 49 0 chr1 158199382 158199585 -38995847 - B3 SINE B2 -3 213 1 1 1791 302 283 40 0 chr1 158199627 158199726 -38995706 - PB1D10 SINE Alu 0 117 15 1 1791 28 29 0 0 chr1 158201747 158201782 -38993650 + AT_rich Low_complexity Low_complexity 1 35 0 2 1791 638 278 108 57 chr1 158201791 158202245 -38993187 + L1MA4 LINE L1 5404 5880 -420 2 1791 266 68 45 0 chr1 158202487 158202531 -38992901 + (GAAA)n Simple_repeat Simple_repeat 4 49 0 2 1791 886 152 20 27 chr1 158202539 158202688 -38992744 + B1_Mus1 SINE Alu 1 148 0 2 1791 180 179 0 0 chr1 158203289 158203328 -38992104 + (CATG)n Simple_repeat Simple_repeat 4 42 0 2 1791 317 294 106 111 chr1 158203360 158203830 -38991602 + L1MEg LINE L1 779 1246 -4838 2 1792 24 32 0 0 chr1 158204251 158204282 -38991150 + AT_rich Low_complexity Low_complexity 1 31 0 2 1792 989 296 58 22 chr1 158204991 158205437 -38989995 + L1_Rod LINE L1 3988 4449 -1398 2 1792 1017 45 0 0 chr1 158205441 158205574 -38989858 + B1_Mus1 SINE Alu 16 148 0 2 1792 740 272 72 19 chr1 158205586 158205893 -38989539 + L1M2 LINE L1 4473 4795 -1348 2 1792 25 0 0 0 chr1 158206891 158206916 -38988516 + AT_rich Low_complexity Low_complexity 1 25 0 2 1792 559 256 164 23 chr1 158207905 158208362 -38987070 + Lx9 LINE L1 7090 7637 -7 2 1792 229 260 0 0 chr1 158209410 158209460 -38985972 + CT-rich Low_complexity Low_complexity 2 51 0 2 1792 333 295 111 64 chr1 158209539 158209819 -38985613 - ORR1C2 LTR MaLR 0 359 64 2 1792 580 289 50 107 chr1 158210390 158210688 -38984744 + B4 SINE B4 3 283 -9 2 1792 359 269 48 103 chr1 158210926 158210944 -38984488 - B4 SINE B4 0 292 275 2 1792 213 39 0 0 chr1 158210944 158210970 -38984462 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1792 359 300 174 58 chr1 158210970 158211194 -38984238 - B4 SINE B4 -18 274 25 2 1792 427 295 126 6 chr1 158211455 158211629 -38983803 + Charlie1a DNA MER1_type 13 207 -1248 2 1792 1555 53 16 0 chr1 158211678 158211867 -38983565 + B2_Mm2 SINE B2 1 192 -3 2 1792 4320 55 0 4 chr1 158211934 158212462 -38982970 + L1Md_F2 LINE L1 6053 6578 -4 2 1792 1532 59 21 0 chr1 158212462 158212649 -38982783 + B2_Mm1t SINE B2 2 192 -1 2 1792 183 80 0 0 chr1 158212649 158212674 -38982758 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1792 362 231 0 44 chr1 158212676 158212783 -38982649 + B1_Mur4 SINE Alu 47 150 0 2 1792 816 210 22 22 chr1 158212955 158213135 -38982297 + B3A SINE B2 1 180 -18 2 1792 1627 42 0 0 chr1 158213174 158213363 -38982069 + B2_Mm1a SINE B2 1 189 -4 2 1792 561 219 8 8 chr1 158213372 158213492 -38981940 + PB1D9 SINE Alu 1 120 0 2 1792 1079 50 43 0 chr1 158213544 158213685 -38981747 - B1_Mus1 SINE Alu 0 148 2 2 1792 232 212 351 6 chr1 158214182 158214353 -38981079 + Charlie1a DNA MER1_type 1226 1455 0 2 1792 317 217 29 0 chr1 158216282 158216351 -38979081 + L1MC LINE L1 5706 5776 -2106 2 1792 630 257 114 6 chr1 158216593 158216769 -38978663 - Lx9 LINE L1 -1045 6599 6405 2 1792 555 124 71 20 chr1 158216786 158216885 -38978547 + Lx9 LINE L1 6670 6773 -871 2 1792 512 276 82 134 chr1 158216948 158217254 -38978178 + B4 SINE B4 3 292 0 2 1792 268 216 40 13 chr1 158217293 158217368 -38978064 + L1MD1 LINE L1 6108 6184 -58 2 1792 915 159 0 0 chr1 158217473 158217618 -38977814 + B1_Mus1 SINE Alu 4 148 0 2 1792 933 161 91 30 chr1 158217814 158218012 -38977420 + B3 SINE B2 3 212 -4 2 1792 646 215 14 22 chr1 158218023 158218161 -38977271 + B1F SINE Alu 12 148 -1 2 1792 383 294 31 16 chr1 158218657 158218785 -38976647 + B4 SINE B4 163 292 0 2 1792 1990 93 37 42 chr1 158219292 158219706 -38975726 - RLTR45 LTR ERVK -117 365 1 2 1792 1391 74 0 0 chr1 158219706 158219882 -38975550 - RLTR45-int LTR ERVK 0 7244 7069 2 1792 2875 56 0 0 chr1 158219880 158220219 -38975213 + RLTR45-int LTR ERVK 6739 7077 -167 2 1792 407 286 71 3 chr1 158220220 158220379 -38975053 - B3A SINE B2 0 216 47 2 1792 290 278 101 23 chr1 158222088 158222145 -38973287 - L1MEf LINE L1 -3994 2206 2151 2 1792 729 209 8 0 chr1 158222145 158222279 -38973153 - B1_Mur4 SINE Alu -15 135 1 2 1792 290 278 101 23 chr1 158222279 158222350 -38973082 - L1MEf LINE L1 -4050 2150 2068 2 1792 500 301 128 35 chr1 158222460 158222679 -38972753 - L1MEf LINE L1 -4160 2040 1789 2 1792 1192 61 0 20 chr1 158222679 158222829 -38972603 - B1_Mus2 SINE Alu 0 147 1 2 1792 500 301 128 35 chr1 158222829 158223150 -38972282 - L1MEf LINE L1 -4412 1788 1450 2 1792 392 123 0 0 chr1 158224745 158224802 -38970630 + B3A SINE B2 16 72 -126 2 1792 205 184 0 0 chr1 158225815 158225853 -38969579 + GA-rich Low_complexity Low_complexity 2 39 0 2 1792 954 72 0 0 chr1 158225860 158225999 -38969433 - B1_Mus2 SINE Alu -1 146 8 2 1792 401 164 16 120 chr1 158225894 158226019 -38969413 - MT2B LTR ERVL -337 264 153 2 1792 198 71 0 0 chr1 158226249 158226277 -38969155 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 2 1792 674 296 201 30 chr1 158226439 158227013 -38968419 + L1M5 LINE L1 2443 3081 -3065 2 1792 729 191 102 58 chr1 158227013 158227219 -38968213 + B3 SINE B2 2 216 0 2 1792 674 296 201 30 chr1 158227219 158227337 -38968095 + L1M5 LINE L1 3082 3245 -2901 2 1792 210 71 0 0 chr1 158227337 158227365 -38968067 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1792 674 296 201 30 chr1 158227365 158227868 -38967564 + L1M5 LINE L1 3246 3844 -2302 2 1792 343 149 9 153 chr1 158228009 158228120 -38967312 + MT2B LTR ERVL 163 257 -344 2 1792 853 148 0 14 chr1 158228023 158228167 -38967265 + B1_Mus2 SINE Alu 6 147 0 2 1792 534 267 57 66 chr1 158228416 158228806 -38966626 + L1M5 LINE L1 4360 4765 -1381 2 1792 846 206 27 5 chr1 158229134 158229319 -38966113 + B3 SINE B2 28 216 0 2 1792 308 281 104 27 chr1 158229337 158229520 -38965912 + L1M5 LINE L1 5203 5399 -747 2 1792 259 222 41 86 chr1 158229522 158229719 -38965713 + RMER17C LTR ERVK 80 267 -143 2 1792 7580 55 26 2 chr1 158229720 158230672 -38964760 + L1_Mus3 LINE L1 5664 6638 0 2 1792 824 9 9 0 chr1 158232823 158232931 -38962501 - B1_Mus2 SINE Alu -32 115 7 2 1792 210 37 0 0 chr1 158233773 158233800 -38961632 + (CCCCG)n Simple_repeat Simple_repeat 3 29 0 2 1792 239 312 73 0 chr1 158234951 158235060 -38960372 - PB1D10 SINE Alu 0 117 1 2 1792 959 290 34 79 chr1 158235095 158235473 -38959959 - MTE2a LTR MaLR 0 379 19 2 1792 1854 152 114 39 chr1 158236062 158236501 -38958931 - RMER15 LTR ERVL -1 574 103 2 1792 257 197 30 15 chr1 158236903 158236970 -38958462 - ID4 SINE ID -1 82 15 2 1792 22 0 0 0 chr1 158237740 158237762 -38957670 + AT_rich Low_complexity Low_complexity 1 22 0 2 1792 269 151 99 55 chr1 158237959 158238035 -38957397 + B1_Mus1 SINE Alu 6 83 -65 2 1792 3510 51 9 0 chr1 158238035 158238465 -38956967 + L1_Mus1 LINE L1 6132 6565 -2 2 1792 269 151 99 55 chr1 158238465 158238479 -38956953 + B1_Mus1 SINE Alu 84 99 -49 2 1792 887 133 28 7 chr1 158238718 158238862 -38956570 + B1_Mus1 SINE Alu 1 147 -1 2 1792 1011 203 73 0 chr1 158239884 158240076 -38955356 + B3 SINE B2 2 207 -9 2 1792 183 239 43 0 chr1 158242231 158242277 -38953155 - MIRm SINE MIR -127 149 102 2 1792 249 281 24 95 chr1 158242759 158242885 -38952547 - MIRc SINE MIR -120 148 32 2 1792 219 88 0 0 chr1 158243459 158243493 -38951939 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1792 234 0 0 0 chr1 158243517 158243543 -38951889 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1792 3336 53 19 0 chr1 158243903 158244319 -38951113 + L1_Mus3 LINE L1 6212 6635 -3 2 1792 225 0 0 0 chr1 158244627 158244652 -38950780 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1792 207 0 0 0 chr1 158244829 158244852 -38950580 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 2 1792 1928 199 27 5 chr1 158244893 158245296 -38950136 - MTC LTR MaLR -8 413 2 2 1792 450 200 39 102 chr1 158245323 158245439 -38949993 + B4 SINE B4 171 279 -13 2 1792 429 20 0 0 chr1 158245439 158245489 -38949943 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1792 450 200 39 102 chr1 158245489 158245500 -38949932 + B4 SINE B4 280 290 -2 2 1792 350 223 30 23 chr1 158245500 158245632 -38949800 - L1M4 LINE L1 -2351 3795 3664 2 1792 293 209 45 0 chr1 158245631 158245698 -38949734 - L1M2 LINE L1 -582 5730 5661 2 1792 687 140 26 17 chr1 158245701 158245817 -38949615 + B1F2 SINE Alu 30 146 -3 2 1792 300 246 95 32 chr1 158245817 158245943 -38949489 - L1M2 LINE L1 -644 5668 5535 2 1792 309 89 350 12 chr1 158245974 158246054 -38949378 - L1M4 LINE L1 -2688 3458 3352 2 1792 340 203 91 105 chr1 158246458 158246601 -38948831 - B1_Mur3 SINE Alu -7 142 2 2 1792 327 85 0 0 chr1 158246623 158246670 -38948762 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 2 1792 835 125 26 59 chr1 158246671 158246824 -38948608 - B1_Mur2 SINE Alu -1 148 1 2 1792 1469 117 359 7 chr1 158247926 158248210 -38947222 - ORR1C2 LTR MaLR 0 384 1 2 1792 230 342 24 40 chr1 158248546 158248671 -38946761 + MER94 DNA AcHobo 1 123 -11 2 1792 317 287 18 87 chr1 158248980 158249104 -38946328 + L1M3 LINE L1 5120 5241 -899 2 1792 3293 0 0 0 chr1 158249104 158249462 -38945970 + L1Md_T LINE L1 6225 6582 0 2 1792 317 287 18 87 chr1 158249462 158249566 -38945866 + L1M3 LINE L1 5242 5332 -808 2 1792 886 243 140 63 chr1 158249566 158249692 -38945740 + MLT2D LTR ERVL 3 124 -290 2 1792 1588 48 0 0 chr1 158249692 158249879 -38945553 - B2_Mm1t SINE B2 -5 188 2 2 1792 886 243 140 63 chr1 158249879 158250130 -38945302 + MLT2D LTR ERVL 125 409 -5 2 1792 229 250 67 67 chr1 158250216 158250336 -38945096 - L1M3 LINE L1 -577 5603 5484 2 1792 286 249 223 37 chr1 158250401 158250554 -38944878 - L1M3 LINE L1 -785 5506 5343 2 1792 180 0 0 0 chr1 158250734 158250754 -38944678 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1792 1215 41 7 0 chr1 158250765 158250911 -38944521 - B1_Mm SINE Alu 0 147 1 2 1792 604 241 234 17 chr1 158251655 158251885 -38943547 + B4A SINE B4 5 284 -8 2 1792 386 108 15 0 chr1 158251897 158251962 -38943470 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1792 204 292 33 11 chr1 158252696 158252786 -38942646 + L2c LINE L2 2999 3090 -297 2 1792 424 289 123 41 chr1 158253217 158253535 -38941897 - MLT1D LTR MaLR 0 505 162 2 1792 745 216 26 26 chr1 158254247 158254464 -38940968 - L1MB7 LINE L1 -235 5949 5736 2 1792 692 252 66 66 chr1 158254740 158254952 -38940480 + B3 SINE B2 2 213 -3 2 1792 411 323 90 6 chr1 158256697 158256853 -38938579 - MTD-int LTR MaLR -1410 170 2 2 1792 863 304 24 97 chr1 158256852 158257304 -38938128 - MTD LTR MaLR 0 419 1 2 1792 595 164 9 0 chr1 158257390 158257500 -38937932 - URR1B DNA MER1_type 0 225 115 2 1792 240 228 0 0 chr1 158258539 158258596 -38936836 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 1792 1092 227 122 46 chr1 158258733 158259103 -38936329 + MTD LTR MaLR 10 407 -12 3 1792 202 389 23 0 chr1 158260265 158260396 -38935036 + MIRc SINE MIR 71 204 -64 3 1792 186 43 0 0 chr1 158260435 158260458 -38934974 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 3 1792 432 55 0 0 chr1 158261459 158261514 -38933918 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1792 594 223 100 13 chr1 158262264 158262414 -38933018 + RSINE1 SINE B4 3 165 0 3 1792 611 205 15 15 chr1 158262425 158262698 -38932734 + (CATA)n Simple_repeat Simple_repeat 1 273 0 3 1792 329 199 14 42 chr1 158262719 158262861 -38932571 + (CATATA)n Simple_repeat Simple_repeat 4 141 0 3 1792 1161 61 7 0 chr1 158263647 158263794 -38931638 + B1_Mus1 SINE Alu 1 148 0 3 1792 351 0 0 0 chr1 158263794 158263833 -38931599 + (CAAAAA)n Simple_repeat Simple_repeat 6 44 0 3 1792 656 35 23 0 chr1 158263834 158263920 -38931512 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 3 1792 3666 43 7 0 chr1 158263935 158264373 -38931059 + L1Md_F2 LINE L1 5146 5586 -297 3 1792 7374 92 2 4 chr1 158264374 158265371 -38930061 + L1Md_F2 LINE L1 5588 6582 0 3 1792 355 208 9 82 chr1 158265786 158265896 -38929536 + MT2B LTR ERVL 1 102 -431 3 1792 1401 93 5 5 chr1 158265915 158266110 -38929322 + B2_Mm2 SINE B2 1 195 0 3 1792 356 175 18 261 chr1 158266164 158266400 -38929032 + MT2B LTR ERVL 85 431 -170 3 1792 1368 62 73 0 chr1 158266400 158266560 -38928872 + B2_Mm1t SINE B2 1 160 -33 3 1792 315 0 0 0 chr1 158266560 158266595 -38928837 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1792 1368 62 73 0 chr1 158266595 158266613 -38928819 + B2_Mm1t SINE B2 161 191 -2 3 1792 356 240 105 60 chr1 158266613 158266666 -38928766 + MT2B LTR ERVL 432 483 -118 3 1792 807 206 0 0 chr1 158266674 158266854 -38928578 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1792 292 98 0 0 chr1 158267137 158267188 -38928244 + MT2B LTR ERVL 483 533 0 3 1792 273 119 0 0 chr1 158267621 158267663 -38927769 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 3 1792 276 221 24 72 chr1 158267664 158267747 -38927685 - RSINE1 SINE B4 -39 126 48 3 1792 1404 74 21 5 chr1 158267809 158267999 -38927433 + B2_Mm2 SINE B2 1 193 -2 3 1792 304 275 46 20 chr1 158268064 158268196 -38927236 + MIRb SINE MIR 23 163 -105 3 1792 378 277 125 0 chr1 158268751 158268863 -38926569 - PB1 SINE Alu 0 127 2 3 1792 789 163 0 0 chr1 158268893 158269071 -38926361 + (CTG)n Simple_repeat Simple_repeat 2 179 0 3 1792 350 264 164 57 chr1 158269545 158269826 -38925606 + L1MEg LINE L1 1177 1487 -4597 3 1792 212 237 0 0 chr1 158269826 158269864 -38925568 + polypurine Low_complexity Low_complexity 3 40 0 3 1792 591 226 7 14 chr1 158270149 158270288 -38925144 - ID_B1 SINE B4 -2 222 85 3 1792 266 336 133 47 chr1 158270735 158270863 -38924569 + B1F SINE Alu 1 139 -10 3 1792 581 229 0 0 chr1 158271492 158271601 -38923831 + PB1D9 SINE Alu 1 109 -11 3 1792 416 19 19 0 chr1 158271603 158271656 -38923776 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1792 1772 200 195 27 chr1 158272356 158272834 -38922598 + RMER15 LTR ERVL 1 558 -17 3 1792 535 298 121 58 chr1 158273017 158273069 -38922363 + L1MC LINE L1 4493 4541 -1605 3 1792 1387 81 32 0 chr1 158273069 158273255 -38922177 + B2_Mm1t SINE B2 2 193 0 3 1792 535 298 121 58 chr1 158273255 158273837 -38921595 + L1MC LINE L1 4542 5167 -979 3 1792 506 318 53 18 chr1 158273964 158274246 -38921186 - B4A SINE B4 0 292 1 3 1792 182 105 26 0 chr1 158274247 158274285 -38921147 + (CCCCCA)n Simple_repeat Simple_repeat 2 40 0 3 1792 751 285 57 11 chr1 158274304 158274639 -38920793 + L1MC LINE L1 5199 5544 -635 3 1792 804 228 63 145 chr1 158274657 158275118 -38920314 + RLTR23 LTR ERV1 8 430 0 3 1792 263 268 30 0 chr1 158275182 158275275 -38920157 + L1MC LINE L1 5670 5767 -677 3 1792 2381 62 45 10 chr1 158275463 158275775 -38919657 - ORR1A2 LTR MaLR 0 327 5 3 1792 457 306 11 37 chr1 158275983 158276173 -38919259 + B3A SINE B2 14 198 0 3 1792 2226 141 92 0 chr1 158276280 158276669 -38918763 + RMER19A LTR ERVK 313 737 0 3 1792 22 35 0 0 chr1 158276708 158276737 -38918695 + AT_rich Low_complexity Low_complexity 1 29 0 3 1792 187 0 0 108 chr1 158276929 158276966 -38918466 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 3 1792 261 0 0 0 chr1 158277694 158277723 -38917709 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1792 486 208 184 0 chr1 158277909 158278034 -38917398 - B1_Mur2 SINE Alu -1 148 1 3 1792 1231 54 0 0 chr1 158278062 158278209 -38917223 - B1_Mus2 SINE Alu 0 147 1 3 1792 465 19 0 0 chr1 158278314 158278368 -38917064 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1792 782 288 74 31 chr1 158278374 158278632 -38916800 - B4A SINE B4 -23 269 1 3 1792 345 189 13 26 chr1 158278841 158278917 -38916515 - PB1D10 SINE Alu 0 117 43 3 1792 396 264 167 13 chr1 158279389 158279539 -38915893 + B4A SINE B4 102 274 -18 3 1792 616 116 46 8 chr1 158279557 158279687 -38915745 + GA-rich Low_complexity Low_complexity 1 135 0 3 1792 351 0 0 0 chr1 158279816 158279855 -38915577 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1792 470 231 7 63 chr1 158279858 158280001 -38915431 - B1F1 SINE Alu -10 139 5 3 1792 302 279 92 62 chr1 158280078 158280273 -38915159 + Charlie7 DNA MER1_type 2004 2204 -408 3 1792 264 59 0 0 chr1 158280506 158280540 -38914892 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1792 512 293 95 76 chr1 158280545 158280807 -38914625 + B4A SINE B4 26 292 0 3 1792 306 273 142 15 chr1 158282005 158282139 -38913293 + L1MEf LINE L1 1138 1288 -4954 3 1792 315 289 219 11 chr1 158282139 158282426 -38913006 + L1MEf LINE L1 2730 3076 -3070 3 1792 287 247 32 0 chr1 158282520 158282613 -38912819 + L1MC LINE L1 3121 3216 -2930 3 1792 831 231 61 15 chr1 158282615 158282897 -38912535 - MTD LTR MaLR 0 419 49 3 1792 441 127 38 0 chr1 158282920 158282999 -38912433 + MTD LTR MaLR 333 414 -5 3 1792 971 181 85 5 chr1 158283237 158283437 -38911995 + B3 SINE B2 1 216 0 3 1792 245 221 0 65 chr1 158283993 158284085 -38911347 + (CAGAGA)n Simple_repeat Simple_repeat 4 89 0 3 1792 1483 194 272 2 chr1 158284383 158284776 -38910656 + RLTR19 LTR ERVK 1 499 0 3 1792 2049 130 93 0 chr1 158284877 158285222 -38910210 + ORR1C1 LTR MaLR 1 377 -1 3 1792 383 86 0 0 chr1 158285559 158285617 -38909815 - ORR1A4 LTR MaLR 0 329 272 3 1792 221 0 35 0 chr1 158285620 158285649 -38909783 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1792 1191 43 0 0 chr1 158286403 158286544 -38908888 + B1_Mus1 SINE Alu 2 142 -6 3 1792 243 0 0 0 chr1 158286546 158286573 -38908859 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1792 295 276 23 0 chr1 158286577 158286664 -38908768 + PB1D10 SINE Alu 27 115 -2 3 1792 2623 68 8 16 chr1 158286803 158287179 -38908253 - L1VL2 LINE L1 -1789 1826 1454 3 1792 38093 56 7 1 chr1 158287184 158293380 -38902052 - L1Md_F3 LINE L1 -14 6570 380 3 1792 6110 88 32 31 chr1 158293376 158294717 -38900715 - L1VL2 LINE L1 -2148 1467 116 3 1792 1678 128 19 59 chr1 158294723 158295047 -38900385 - ORR1A1 LTR MaLR -35 311 1 3 1792 236 295 0 11 chr1 158295134 158295223 -38900209 + L1MB7 LINE L1 5914 6001 -183 3 1792 555 121 0 0 chr1 158296079 158296170 -38899262 - RLTR28 LTR ERVL -17 507 417 3 1792 192 40 0 0 chr1 158296615 158296640 -38898792 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1792 1843 162 21 28 chr1 158296640 158297028 -38898404 - RLTR28 LTR ERVL -70 454 70 3 1792 286 279 51 0 chr1 158297116 158297195 -38898237 + ID4 SINE ID 1 83 0 3 1792 6821 94 56 4 chr1 158297251 158297349 -38898083 + Lx3_Mus LINE L1 5971 6068 -941 3 1792 186 43 0 0 chr1 158297349 158297372 -38898060 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 3 1792 6821 94 56 4 chr1 158297372 158297959 -38897473 + Lx3_Mus LINE L1 6069 6675 -334 3 1792 195 42 0 0 chr1 158297959 158297983 -38897449 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 3 1792 6821 94 56 4 chr1 158297983 158298283 -38897149 + Lx3_Mus LINE L1 6676 7007 -2 3 1792 374 217 183 0 chr1 158298437 158298552 -38896880 + B1F2 SINE Alu 14 149 0 3 1792 1509 73 0 5 chr1 158298605 158298799 -38896633 + B2_Mm2 SINE B2 2 194 -1 3 1792 386 247 20 30 chr1 158298973 158299073 -38896359 + B1_Mur2 SINE Alu 51 149 0 3 1792 340 143 14 14 chr1 158299087 158299158 -38896274 + GA-rich Low_complexity Low_complexity 3 73 0 3 1792 474 194 0 44 chr1 158299171 158299284 -38896148 - MTD LTR MaLR -311 108 1 3 1792 631 277 173 41 chr1 158299286 158299641 -38895791 + L1MB2 LINE L1 5464 5905 -266 3 1792 366 23 0 0 chr1 158299641 158299684 -38895748 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1792 631 270 158 47 chr1 158299684 158299712 -38895720 + L1MB2 LINE L1 5906 5929 -242 3 1792 1476 114 23 5 chr1 158299712 158299933 -38895499 + URR1B DNA MER1_type 1 225 0 3 1792 631 270 158 47 chr1 158299933 158300066 -38895366 + L1MB2 LINE L1 5930 6065 -106 3 1792 2181 226 87 99 chr1 158300138 158300725 -38894707 - L1M2 LINE L1 -1389 4754 4222 3 1792 2011 126 24 62 chr1 158300725 158301064 -38894368 + ORR1A3 LTR MaLR 1 326 0 3 1792 2181 226 87 99 chr1 158301064 158301254 -38894178 - L1M2 LINE L1 -1922 4221 4021 3 1792 3133 112 15 11 chr1 158301254 158301713 -38893719 + RMER6B LTR ERVK 1 461 0 3 1792 2181 226 87 99 chr1 158301713 158301923 -38893509 - L1M2 LINE L1 -2123 4020 3778 3 1792 4998 174 57 3 chr1 158302021 158303504 -38891928 + Lx5 LINE L1 5011 6804 -656 3 1792 1876 118 12 65 chr1 158303507 158303844 -38891588 - ORR1A2 LTR MaLR -8 319 1 3 1792 1876 262 10 53 chr1 158303851 158304363 -38891069 + Lx5 LINE L1 6487 6976 -74 3 1792 690 35 0 0 chr1 158304369 158304454 -38890978 + (GGAGA)n Simple_repeat Simple_repeat 4 88 0 3 1792 519 250 81 25 chr1 158304485 158304682 -38890750 - L1M2 LINE L1 -2367 3776 3569 3 1792 669 294 60 23 chr1 158304960 158305176 -38890256 - B4A SINE B4 -4 288 65 3 1792 385 241 205 0 chr1 158305213 158305338 -38890094 + B3 SINE B2 2 160 -38 3 1792 486 186 81 0 chr1 158305338 158305460 -38889972 + L1M4 LINE L1 5166 5305 -841 3 1792 270 160 0 0 chr1 158305460 158305510 -38889922 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1792 386 300 268 12 chr1 158305517 158305919 -38889513 + L1M4 LINE L1 5322 5827 -357 3 1792 285 267 40 0 chr1 158305919 158305994 -38889438 + B1F1 SINE Alu 2 79 -70 3 1792 334 267 17 5 chr1 158306034 158306137 -38889295 + B1_Mus2 SINE Alu 42 145 -5 3 1792 21 0 0 0 chr1 158306877 158306898 -38888534 + AT_rich Low_complexity Low_complexity 1 21 0 3 1792 249 269 130 32 chr1 158307387 158307510 -38887922 + B1F1 SINE Alu 12 146 -3 3 1792 429 20 0 0 chr1 158307634 158307684 -38887748 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1792 696 249 251 6 chr1 158307868 158308195 -38887237 + L1MB3 LINE L1 5777 6183 0 4 1792 1659 26 0 15 chr1 158308854 158309049 -38886383 + B2_Mm1t SINE B2 2 193 0 4 1792 209 234 27 36 chr1 158309209 158309302 -38886130 + T-rich Low_complexity Low_complexity 21 113 0 4 1792 836 145 72 0 chr1 158309302 158309440 -38885992 - B1_Mus1 SINE Alu 0 148 1 4 1792 209 234 27 36 chr1 158309440 158309457 -38885975 + T-rich Low_complexity Low_complexity 4 20 0 4 1792 928 152 8 12 chr1 158309638 158309880 -38885552 + GA-rich Low_complexity Low_complexity 1 241 0 4 1792 324 186 10 30 chr1 158309916 158310016 -38885416 + GA-rich Low_complexity Low_complexity 2 99 0 4 1792 2614 155 23 19 chr1 158310041 158310555 -38884877 + RMER20A LTR ERVK 1 516 0 4 1792 897 60 0 0 chr1 158310555 158310671 -38884761 + (GGGA)n Simple_repeat Simple_repeat 2 117 0 4 1792 754 201 19 89 chr1 158311422 158311635 -38883797 + B3A SINE B2 1 198 0 4 1792 1087 58 0 14 chr1 158311658 158311799 -38883633 + B1_Mus1 SINE Alu 1 139 -9 4 1792 236 53 26 0 chr1 158311799 158311837 -38883595 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1792 249 260 0 0 chr1 158312069 158312146 -38883286 + CT-rich Low_complexity Low_complexity 1 77 0 4 1792 385 207 46 0 chr1 158312146 158312233 -38883199 - PB1D7 SINE Alu -21 99 9 4 1792 22 80 0 0 chr1 158312660 158312710 -38882722 + AT_rich Low_complexity Low_complexity 1 50 0 4 1792 282 249 169 0 chr1 158313154 158313267 -38882165 + L1_Rod LINE L1 4070 4215 -1928 4 1792 1366 161 227 13 chr1 158313292 158313600 -38881832 + ORR1D1 LTR MaLR 1 374 0 4 1792 2106 208 27 63 chr1 158313600 158314124 -38881308 + ORR1D1-int LTR MaLR 1 505 -865 4 1792 723 24 0 0 chr1 158314196 158314281 -38881151 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1792 790 156 15 0 chr1 158314315 158314450 -38880982 - B1_Mus2 SINE Alu 0 147 11 4 1792 1012 117 0 0 chr1 158314621 158314766 -38880666 - B1_Mur2 SINE Alu 0 149 5 4 1792 480 266 61 61 chr1 158314834 158314998 -38880434 + RSINE1 SINE B4 2 165 0 4 1792 1015 68 169 30 chr1 158315039 158315205 -38880227 + B2_Mm2 SINE B2 1 189 -6 4 1792 366 294 0 0 chr1 158315679 158315771 -38879661 - RSINE1 SINE B4 -62 103 12 4 1792 341 247 194 0 chr1 158315771 158315864 -38879568 - ID_B1 SINE B4 -20 204 94 4 1792 291 235 153 0 chr1 158316076 158316174 -38879258 - Tigger5 DNA MER2_type -3 2403 2291 4 1792 336 298 0 63 chr1 158316169 158316280 -38879152 - Tigger5 DNA MER2_type -2163 243 140 4 1792 232 137 19 19 chr1 158316869 158316921 -38878511 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1792 756 182 7 45 chr1 158317904 158318059 -38877373 + B1_Mur4 SINE Alu 2 150 0 4 1792 383 323 45 56 chr1 158318494 158318763 -38876669 + B4 SINE B4 10 275 -17 4 1792 291 114 0 0 chr1 158318877 158318921 -38876511 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1792 1141 88 0 0 chr1 158318921 158319069 -38876363 - B1_Mus1 SINE Alu 0 148 1 4 1792 1995 194 13 8 chr1 158319224 158319618 -38875814 + MTC LTR MaLR 1 396 -25 4 1792 314 282 44 66 chr1 158319734 158319800 -38875632 + RSINE1 SINE B4 3 72 -93 4 1792 216 0 0 0 chr1 158319800 158319824 -38875608 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1792 314 282 44 66 chr1 158319824 158319848 -38875584 + RSINE1 SINE B4 73 91 -74 4 1792 783 149 60 0 chr1 158319864 158320032 -38875400 + ORR1B1 LTR MaLR 1 178 -216 4 1792 704 192 11 17 chr1 158320032 158320212 -38875220 + CT-rich Low_complexity Low_complexity 1 179 0 4 1792 674 221 20 0 chr1 158320213 158320362 -38875070 + B3 SINE B2 54 205 -11 4 1792 240 258 32 0 chr1 158320395 158320457 -38874975 + B4A SINE B4 223 286 -6 4 1792 686 120 4 88 chr1 158320463 158320724 -38874708 + (CA)n Simple_repeat Simple_repeat 1 238 0 4 1792 3751 170 48 49 chr1 158320866 158321105 -38874327 - RLTR40 LTR ERVK -10 807 590 4 1792 345 125 0 0 chr1 158321105 158321161 -38874271 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1792 3751 170 48 49 chr1 158321161 158321720 -38873712 - RLTR40 LTR ERVK -228 589 10 4 1792 195 217 0 0 chr1 158322151 158322211 -38873221 + A-rich Low_complexity Low_complexity 1 60 0 4 1792 380 219 186 21 chr1 158323521 158323661 -38871771 + RSINE1 SINE B4 3 165 0 4 1792 480 265 0 0 chr1 158323694 158323811 -38871621 + PB1D9 SINE Alu 2 118 -2 4 1792 408 210 0 0 chr1 158323832 158323913 -38871519 + B1_Mur1 SINE Alu 68 148 -1 4 1792 326 229 136 76 chr1 158324151 158324283 -38871149 - RSINE1 SINE B4 -10 155 16 4 1792 389 224 0 0 chr1 158324332 158324408 -38871024 + ID_B1 SINE B4 142 217 -7 4 1792 1633 47 0 0 chr1 158324732 158324923 -38870509 + B2_Mm1a SINE B2 1 191 -2 4 1792 3593 41 0 20 chr1 158324975 158325423 -38870009 - L1_Mus1 LINE L1 0 6567 6129 4 1792 288 0 0 0 chr1 158325426 158325458 -38869974 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1792 1560 27 11 5 chr1 158325891 158326077 -38869355 + B2_Mm1a SINE B2 2 188 -5 4 1792 281 262 0 15 chr1 158326393 158326459 -38868973 - RSINE1 SINE B4 -98 67 3 4 1792 381 281 8 34 chr1 158326471 158326589 -38868843 - PB1D10 SINE Alu -2 115 1 4 1792 478 206 88 88 chr1 158326591 158326616 -38868816 + L1MA5 LINE L1 6118 6140 -160 4 1792 601 263 93 83 chr1 158326616 158326832 -38868600 + ID_B1 SINE B4 4 221 -3 4 1792 516 206 88 88 chr1 158326832 158326987 -38868445 + L1MA5 LINE L1 6132 6298 -2 4 1792 284 334 85 11 chr1 158327325 158327554 -38867878 - MIR SINE MIR -21 241 1 4 1792 396 0 0 0 chr1 158327758 158327802 -38867630 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1792 812 194 14 0 chr1 158327924 158328063 -38867369 + B1_Mus1 SINE Alu 2 142 -6 4 1792 48 88 0 0 chr1 158328067 158328192 -38867240 + AT_rich Low_complexity Low_complexity 1 125 0 4 1792 195 186 0 0 chr1 158328196 158328239 -38867193 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1792 260 156 18 21 chr1 158328819 158328880 -38866552 + L1MC4 LINE L1 6748 6814 -1228 4 1792 353 300 60 0 chr1 158329116 158329216 -38866216 + ID_B1 SINE B4 102 207 -17 4 1792 282 301 78 0 chr1 158329228 158329331 -38866101 + RSINE1 SINE B4 11 121 -44 4 1792 414 0 0 0 chr1 158329335 158329381 -38866051 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1792 368 192 13 40 chr1 158329534 158329610 -38865822 - ID_B1 SINE B4 -63 161 88 4 1792 382 206 15 0 chr1 158329547 158329615 -38865817 - PB1D10 SINE Alu -47 70 2 4 1792 651 290 39 0 chr1 158329638 158329845 -38865587 - B3 SINE B2 0 216 2 4 1792 407 113 14 0 chr1 158330066 158330137 -38865295 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1792 3095 122 6 31 chr1 158330523 158331037 -38864395 + RLTR1D LTR ERV1 105 605 0 4 1792 239 264 53 62 chr1 158331050 158331163 -38864269 - PB1D9 SINE Alu -4 116 5 4 1792 818 181 0 14 chr1 158331181 158331327 -38864105 - B1_Mur3 SINE Alu 0 149 6 4 1792 541 261 18 42 chr1 158331183 158331351 -38864081 - ID_B1 SINE B4 0 224 61 4 1792 902 98 0 0 chr1 158331530 158331663 -38863769 - URR1B DNA MER1_type 0 225 93 4 1792 657 217 51 0 chr1 158331664 158331802 -38863630 + B1_Mur4 SINE Alu 2 146 -4 4 1792 1051 30 15 0 chr1 158331802 158331937 -38863495 + (GGGAGA)n Simple_repeat Simple_repeat 4 140 0 4 1792 707 193 43 59 chr1 158332081 158332268 -38863164 - RLTR25A LTR ERVK 0 1103 920 4 1792 1229 165 8 75 chr1 158332232 158332500 -38862932 + ORR1D-int LTR MaLR 323 572 -798 4 1792 633 195 0 9 chr1 158332494 158332608 -38862824 + B1_Mur2 SINE Alu 29 141 -8 4 1792 239 79 0 26 chr1 158332616 158332655 -38862777 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 4 1792 1950 104 237 9 chr1 158333494 158333832 -38861600 + RLTR9F LTR ERVK 1 415 0 4 1792 906 253 185 28 chr1 158334428 158334677 -38860755 - MTD LTR MaLR 0 419 111 4 1792 1380 109 16 0 chr1 158334677 158334869 -38860563 + B2_Mm2 SINE B2 1 195 0 4 27 906 253 185 28 chr1 158334869 158334981 -38860451 - MTD LTR MaLR -309 110 1 4 1793 4593 51 13 2 chr1 158335055 158335609 -38859823 + LTRIS2 LTR ERV1 5 564 0 4 1793 358 162 29 0 chr1 158335902 158335970 -38859462 + URR1A DNA MER1_type 3 72 -154 4 1793 323 258 40 40 chr1 158336491 158336592 -38858840 + RSINE1 SINE B4 2 102 -63 4 1793 30 27 0 0 chr1 158336678 158336715 -38858717 + AT_rich Low_complexity Low_complexity 1 37 0 4 1793 412 288 86 0 chr1 158336720 158336859 -38858573 + RSINE1 SINE B4 9 159 -6 4 1793 229 308 77 0 chr1 158337083 158337174 -38858258 + B4A SINE B4 71 168 -124 4 1793 368 273 45 0 chr1 158337102 158337190 -38858242 + B1_Mur4 SINE Alu 9 100 -50 4 1793 417 39 0 0 chr1 158337193 158337244 -38858188 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1793 285 182 0 0 chr1 158337244 158337299 -38858133 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 4 1793 714 219 7 0 chr1 158337517 158337654 -38857778 + B1_Mur1 SINE Alu 6 143 -6 4 1793 1970 143 5 97 chr1 158338162 158338564 -38856868 + RLTR8 LTR ERVK 1 365 0 4 1793 2975 102 38 2 chr1 158338830 158339252 -38856180 + RLTR9B LTR ERVK 1 437 0 4 1793 598 197 0 13 chr1 158339461 158339615 -38855817 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 1793 1163 82 0 0 chr1 158340177 158340324 -38855108 + B1_Mus2 SINE Alu 1 147 0 4 1793 295 309 12 16 chr1 158341055 158341197 -38854235 + MER70-int LTR ERVL 1700 1765 -3258 4 1793 395 269 70 140 chr1 158341531 158341873 -38853559 + MYSERV6-int LTR ERVK 5518 5835 -3124 4 1793 257 277 40 46 chr1 158341967 158342141 -38853291 + MER70-int LTR ERVL 3831 4003 -1482 4 1793 3027 28 34 6 chr1 158345540 158345897 -38849535 - L1Md_F2 LINE L1 -19 6563 6197 4 1793 264 30 0 0 chr1 158346701 158346734 -38848698 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1793 4255 161 20 47 chr1 158347215 158348277 -38847155 + MMETn-int LTR ERVK 2356 3141 -1703 4 1793 1376 97 0 5 chr1 158348724 158348920 -38846512 - B2_Mm2 SINE B2 0 195 1 4 1793 463 271 8 33 chr1 158348941 158349063 -38846369 - PB1D7 SINE Alu 0 120 2 5 1793 275 268 59 51 chr1 158349087 158349205 -38846227 + RSINE1 SINE B4 5 123 -42 5 1793 684 149 9 0 chr1 158350066 158350173 -38845259 - B1_Mur1 SINE Alu -5 144 37 5 1793 257 268 69 14 chr1 158351375 158351447 -38843985 + B1_Mur1 SINE Alu 69 144 -5 5 1793 818 212 63 37 chr1 158352098 158352289 -38843143 - B3A SINE B2 -2 196 1 5 1793 262 134 13 107 chr1 158352291 158352366 -38843066 + RCHARR1 DNA MER1_type 469 536 -438 5 1793 610 182 70 16 chr1 158352376 158352504 -38842928 + ID_B1 SINE B4 90 224 0 5 1793 453 196 36 36 chr1 158352530 158352593 -38842839 + RCHARR1 DNA MER1_type 617 681 -293 5 1793 1395 106 0 0 chr1 158352593 158352782 -38842650 + B2_Mm2 SINE B2 5 193 -2 5 1793 453 196 36 36 chr1 158352782 158352856 -38842576 + RCHARR1 DNA MER1_type 682 754 -220 5 1793 338 230 54 0 chr1 158352860 158352934 -38842498 + PB1D9 SINE Alu 2 79 -41 5 1793 196 53 0 50 chr1 158352939 158352979 -38842453 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1793 525 204 129 0 chr1 158354321 158354453 -38840979 + B1_Mur1 SINE Alu 1 149 0 5 1793 1057 120 103 0 chr1 158356174 158356349 -38839083 + B2_Mm2 SINE B2 3 195 0 5 1793 200 171 120 3 chr1 158356607 158356663 -38838769 - MIR SINE MIR -87 181 122 5 1793 517 254 0 43 chr1 158356852 158356992 -38838440 - ID_B1 SINE B4 -10 214 81 5 1793 896 119 171 11 chr1 158357269 158357456 -38837976 - URR1B DNA MER1_type 0 225 9 5 1793 914 180 0 26 chr1 158357616 158357770 -38837662 - B1_Mur4 SINE Alu 0 150 1 5 1793 611 181 111 15 chr1 158358070 158358205 -38837227 + B1_Mur3 SINE Alu 1 148 -1 5 1793 216 0 0 0 chr1 158358663 158358687 -38836745 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1793 374 232 19 66 chr1 158358886 158358992 -38836440 + PB1D10 SINE Alu 11 111 -6 5 1793 243 88 0 0 chr1 158359103 158359137 -38836295 + (CCCCCA)n Simple_repeat Simple_repeat 5 38 0 5 1793 1155 41 21 0 chr1 158359271 158359416 -38836016 + B1_Mus1 SINE Alu 1 148 0 5 1793 192 40 0 0 chr1 158359416 158359441 -38835991 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1793 22 0 0 0 chr1 158360164 158360186 -38835246 + AT_rich Low_complexity Low_complexity 1 22 0 5 1793 532 203 110 22 chr1 158360190 158360326 -38835106 + B1F SINE Alu 2 149 0 5 1793 198 0 0 0 chr1 158360998 158361020 -38834412 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5 1793 1077 101 42 0 chr1 158361731 158361899 -38833533 + B2_Mm2 SINE B2 20 194 -1 5 1793 281 77 0 71 chr1 158361902 158361972 -38833460 + (GGAAA)n Simple_repeat Simple_repeat 4 68 0 5 1793 267 309 10 20 chr1 158363287 158363386 -38832046 + ORR1E LTR MaLR 1 98 -261 5 1793 1012 100 25 0 chr1 158363552 158363712 -38831720 - B2_Mm2 SINE B2 -24 171 8 5 1793 301 173 0 0 chr1 158364028 158364080 -38831352 + B1F2 SINE Alu 40 91 -58 5 1793 181 139 47 0 chr1 158364082 158364125 -38831307 + GA-rich Low_complexity Low_complexity 4 48 0 5 1793 286 239 0 43 chr1 158365169 158365239 -38830193 - PB1D7 SINE Alu -18 102 36 5 1793 351 205 25 13 chr1 158365375 158365454 -38829978 + RSINE1 SINE B4 3 82 -83 5 1793 219 36 0 0 chr1 158365497 158365525 -38829907 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1793 1196 61 0 0 chr1 158365532 158365679 -38829753 - B1_Mus1 SINE Alu 0 148 2 5 1793 616 135 89 67 chr1 158365706 158365841 -38829591 + B1_Mur3 SINE Alu 2 139 -10 5 1793 249 139 0 0 chr1 158365849 158365892 -38829540 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1793 252 0 0 0 chr1 158366215 158366243 -38829189 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1793 1156 56 7 0 chr1 158366465 158366608 -38828824 - B1_Mus1 SINE Alu -1 147 4 5 1793 1116 179 34 5 chr1 158366911 158367119 -38828313 + B3 SINE B2 1 214 -2 5 1793 474 229 0 10 chr1 158368160 158368257 -38827175 - PB1D10 SINE Alu -20 97 2 5 1793 267 278 8 100 chr1 158368162 158368282 -38827150 - MT2B2 LTR ERVL -333 251 143 5 1793 240 35 0 0 chr1 158368639 158368668 -38826764 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 1793 539 198 17 25 chr1 158368668 158368777 -38826655 - PB1D9 SINE Alu -10 110 1 5 1793 833 196 7 20 chr1 158368803 158368954 -38826478 + B1_Mur2 SINE Alu 1 149 0 5 1793 631 153 1 23 chr1 158368964 158369086 -38826346 + B3 SINE B2 2 117 -76 5 1793 22 35 0 0 chr1 158369126 158369155 -38826277 + AT_rich Low_complexity Low_complexity 1 29 0 5 1793 1003 117 14 7 chr1 158369179 158369325 -38826107 - B1_Mur4 SINE Alu -2 148 2 5 1793 34 24 0 0 chr1 158369339 158369380 -38826052 + AT_rich Low_complexity Low_complexity 1 41 0 5 1793 887 164 14 0 chr1 158370056 158370202 -38825230 + B1_Mus1 SINE Alu 1 148 0 5 1793 762 190 0 55 chr1 158370932 158371077 -38824355 + B1_Mur2 SINE Alu 1 137 -12 5 1793 203 0 37 0 chr1 158371077 158371104 -38824328 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1793 229 318 0 0 chr1 158371174 158371237 -38824195 + ID_B1 SINE B4 79 141 -83 5 1793 243 88 0 0 chr1 158371710 158371744 -38823688 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 5 1793 693 290 31 27 chr1 158371799 158372145 -38823287 + L1MA4 LINE L1 5692 6026 -130 5 1793 516 105 11 23 chr1 158372783 158372871 -38822561 + B1_Mur3 SINE Alu 63 149 0 5 1793 480 35 0 0 chr1 158373432 158373490 -38821942 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 5 1793 180 77 0 0 chr1 158373539 158373565 -38821867 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 5 1793 1057 127 232 0 chr1 158374058 158374239 -38821193 + URR1B DNA MER1_type 1 223 -2 5 1793 211 246 17 17 chr1 158374554 158374612 -38820820 + (CAGA)n Simple_repeat Simple_repeat 3 60 0 5 1793 400 255 94 0 chr1 158375130 158375236 -38820196 - RSINE1 SINE B4 -21 144 29 5 1793 242 130 65 0 chr1 158375564 158375610 -38819822 + MIR SINE MIR 14 62 -200 5 1793 598 302 12 19 chr1 158375715 158375877 -38819555 + RSINE1 SINE B4 3 163 -2 5 1793 1089 124 0 0 chr1 158375879 158376359 -38819073 + (CATA)n Simple_repeat Simple_repeat 1 480 0 5 1793 585 190 43 8 chr1 158376443 158376560 -38818872 + B1_Mur1 SINE Alu 23 143 -6 5 1793 288 284 0 26 chr1 158377030 158377106 -38818326 - ID_B1 SINE B4 -2 222 149 5 1793 763 211 134 5 chr1 158377220 158377406 -38818026 - B3 SINE B2 -6 210 1 5 1793 998 165 39 0 chr1 158377779 158377961 -38817471 - B2_Mm2 SINE B2 -4 191 3 5 1793 313 284 0 43 chr1 158378040 158378132 -38817300 + B1F SINE Alu 61 148 -1 5 1793 221 163 54 20 chr1 158378270 158378328 -38817104 - PB1D9 SINE Alu -86 62 2 5 1793 325 227 118 52 chr1 158378932 158379067 -38816365 + RSINE1 SINE B4 22 165 0 5 1793 21 36 0 0 chr1 158379094 158379122 -38816310 + AT_rich Low_complexity Low_complexity 1 28 0 5 1793 322 310 26 17 chr1 158379145 158379163 -38816269 - PB1D10 SINE Alu -1 116 99 5 1793 234 0 0 0 chr1 158379163 158379189 -38816243 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1793 332 276 33 1 chr1 158379189 158379285 -38816147 - B1F1 SINE Alu -19 98 1 5 1793 252 191 0 50 chr1 158379985 158380106 -38815326 + GA-rich Low_complexity Low_complexity 2 116 0 5 1793 436 176 186 0 chr1 158380238 158380340 -38815092 + B1F SINE Alu 28 148 -1 5 1793 207 88 0 0 chr1 158381086 158381120 -38814312 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1793 466 264 0 4 chr1 158381120 158381240 -38814192 - PB1D7 SINE Alu 0 120 1 5 1793 236 254 30 0 chr1 158381710 158381777 -38813655 + ID4 SINE ID 3 71 -12 5 1793 1180 55 0 0 chr1 158381813 158381958 -38813474 + B1_Mus1 SINE Alu 2 146 -2 5 1793 198 0 0 0 chr1 158382106 158382128 -38813304 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 1793 264 100 0 0 chr1 158382719 158382759 -38812673 + (TCC)n Simple_repeat Simple_repeat 1 40 0 5 1793 305 195 58 47 chr1 158382914 158383000 -38812432 + ID_B1 SINE B4 126 212 -12 5 1793 186 186 14 41 chr1 158383003 158383076 -38812356 + GA-rich Low_complexity Low_complexity 1 71 0 5 1793 434 244 119 25 chr1 158383278 158383396 -38812036 + B1F SINE Alu 21 149 0 5 1793 329 282 156 24 chr1 158383396 158383435 -38811997 + B4A SINE B4 131 284 -8 5 1793 210 143 0 0 chr1 158383436 158383471 -38811961 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1793 280 236 28 0 chr1 158384003 158384075 -38811357 - ID SINE ID -149 75 2 5 1793 409 310 12 31 chr1 158384878 158385041 -38810391 - RSINE1 SINE B4 -4 161 2 5 1793 555 209 8 25 chr1 158385116 158385234 -38810198 + PB1D10 SINE Alu 2 117 0 5 1793 2330 108 29 13 chr1 158385247 158385624 -38809808 + ORR1B1 LTR MaLR 12 394 0 5 1793 650 254 96 5 chr1 158385897 158386095 -38809337 - B3 SINE B2 0 216 1 5 1793 867 199 22 22 chr1 158386185 158386365 -38809067 - B3A SINE B2 -18 180 1 5 1793 394 191 11 35 chr1 158386368 158386455 -38808977 - PB1D10 SINE Alu -9 108 24 5 1793 298 352 12 25 chr1 158386555 158386718 -38808714 + RSINE1 SINE B4 3 163 -2 5 1793 580 157 13 5 chr1 158386819 158386951 -38808481 + URR1B DNA MER1_type 59 190 -35 5 1793 279 272 67 42 chr1 158386987 158387106 -38808326 + Kanga2_a DNA Tc2 423 544 -344 5 1793 279 173 0 0 chr1 158387642 158387694 -38807738 + B1F2 SINE Alu 11 62 -87 5 1793 30 0 0 0 chr1 158387715 158387745 -38807687 + AT_rich Low_complexity Low_complexity 1 30 0 5 1793 616 235 81 0 chr1 158387751 158387900 -38807532 + RSINE1 SINE B4 3 163 -2 5 1793 259 157 0 19 chr1 158387944 158387996 -38807436 + ID_B1 SINE B4 174 224 0 6 1793 619 227 107 10 chr1 158388430 158388610 -38806822 + B3A SINE B2 1 185 -10 6 1793 255 208 27 14 chr1 158389257 158389330 -38806102 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 6 1793 240 272 135 42 chr1 158389550 158389570 -38805862 - ID_B1 SINE B4 -26 198 94 6 1793 357 149 46 13 chr1 158389570 158389646 -38805786 - B1F SINE Alu -50 99 13 6 1793 400 211 62 27 chr1 158389660 158389772 -38805660 - PB1D10 SINE Alu -1 116 1 6 1793 824 134 67 7 chr1 158390205 158390340 -38805092 + B1_Mus1 SINE Alu 5 147 -1 6 1793 665 247 42 68 chr1 158390388 158390625 -38804807 + RSINE1 SINE B4 1 222 -2 6 1793 329 227 34 14 chr1 158390561 158390644 -38804788 + PB1D7 SINE Alu 54 139 -10 6 1793 233 224 27 107 chr1 158390710 158390785 -38804647 + RSINE1 SINE B4 97 165 0 6 1793 315 0 0 0 chr1 158390807 158390842 -38804590 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 1793 725 221 149 11 chr1 158391652 158391826 -38803606 + B3 SINE B2 4 201 -15 6 1793 632 165 342 0 chr1 158391956 158392114 -38803318 + B3 SINE B2 1 212 -4 6 1793 812 148 24 0 chr1 158392117 158392286 -38803146 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 1793 392 353 0 16 chr1 158392293 158392414 -38803018 - ID_B1 SINE B4 -8 216 98 6 1793 283 359 66 37 chr1 158392414 158392426 -38803006 - B1F2 SINE Alu -3 143 7 6 1793 26 50 0 0 chr1 158392428 158392468 -38802964 + AT_rich Low_complexity Low_complexity 1 40 0 6 1793 249 350 89 21 chr1 158392487 158392553 -38802879 + B4A SINE B4 22 100 -192 6 1793 462 198 175 0 chr1 158392553 158392679 -38802753 + B1_Mur3 SINE Alu 1 148 -1 6 1793 276 122 0 0 chr1 158393067 158393108 -38802324 - PB1D9 SINE Alu -7 113 73 6 1793 835 166 10 56 chr1 158393151 158393354 -38802078 - B3 SINE B2 -5 190 1 6 1793 688 189 240 12 chr1 158393358 158393529 -38801903 - B3 SINE B2 -6 210 1 6 1793 406 155 200 30 chr1 158393550 158393650 -38801782 - PB1D9 SINE Alu 0 120 4 6 1793 3466 28 5 0 chr1 158393817 158394211 -38801221 + MTA_Mm LTR MaLR 1 396 0 6 1793 464 280 83 0 chr1 158394244 158394376 -38801056 + ID_B1 SINE B4 81 223 -1 6 1793 265 228 18 0 chr1 158394790 158394847 -38800585 + B1_Mus1 SINE Alu 3 60 -88 6 1793 1321 67 44 6 chr1 158395484 158395664 -38799768 - B2_Mm1t SINE B2 -5 188 2 6 1793 1966 124 40 37 chr1 158395845 158396171 -38799261 + ORR1A2 LTR MaLR 1 327 0 6 1793 739 233 112 20 chr1 158396427 158396465 -38798967 - B3 SINE B2 0 216 179 6 1793 378 0 0 0 chr1 158396465 158396507 -38798925 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1793 739 233 112 20 chr1 158396507 158396665 -38798767 - B3 SINE B2 -38 178 4 6 1793 298 231 197 15 chr1 158396950 158397082 -38798350 + L1MA5A LINE L1 6137 6292 -5 6 1793 266 286 12 61 chr1 158397093 158397175 -38798257 + ID4 SINE ID 6 83 0 6 1793 238 248 226 10 chr1 158397469 158397571 -38797861 - MurSatRep1 Unknown Unknown -1867 270 147 6 1793 234 0 0 0 chr1 158397576 158397602 -38797830 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 1793 1157 79 12 0 chr1 158397602 158397766 -38797666 + (GGAGAA)n Simple_repeat Simple_repeat 3 169 0 6 1793 189 0 0 0 chr1 158398700 158398721 -38796711 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1793 252 0 0 0 chr1 158398741 158398769 -38796663 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1793 279 0 0 0 chr1 158398769 158398799 -38796633 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1793 222 238 109 16 chr1 158399125 158399189 -38796243 + B4A SINE B4 1 70 -222 6 1793 850 245 29 5 chr1 158399196 158399401 -38796031 + B3 SINE B2 1 210 -6 6 1793 1788 153 109 9 chr1 158399611 158399940 -38795492 + ORR1B1 LTR MaLR 1 362 -32 6 1793 225 222 0 22 chr1 158399948 158399994 -38795438 - PB1D10 SINE Alu -72 45 1 6 1793 492 18 0 0 chr1 158400224 158400281 -38795151 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1793 315 190 145 63 chr1 158401608 158401737 -38793695 - B1_Mus1 SINE Alu -1 148 7 6 1793 595 287 0 32 chr1 158401814 158401969 -38793463 + RSINE1 SINE B4 3 152 -13 6 1793 561 248 40 0 chr1 158402334 158402459 -38792973 + ID_B1 SINE B4 93 222 -2 6 1793 223 175 0 24 chr1 158402459 158402500 -38792932 + GA-rich Low_complexity Low_complexity 1 40 0 6 1793 234 0 0 0 chr1 158402589 158402615 -38792817 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1793 335 145 15 46 chr1 158402615 158402680 -38792752 - B1_Mm SINE Alu -3 144 82 6 1793 306 148 0 0 chr1 158403850 158403904 -38791528 + (A)n Simple_repeat Simple_repeat 1 54 0 6 1793 792 185 0 0 chr1 158405462 158405592 -38789840 + B1_Mur3 SINE Alu 3 132 -17 6 1793 363 44 0 0 chr1 158405592 158405637 -38789795 + (TAGG)n Simple_repeat Simple_repeat 4 48 0 6 1793 831 78 0 0 chr1 158405639 158405755 -38789677 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 6 1793 314 277 31 21 chr1 158406581 158406677 -38788755 - L1M5 LINE L1 -2940 3206 3110 6 1793 637 239 57 24 chr1 158407799 158408009 -38787423 + ID_B1 SINE B4 2 218 -6 6 1793 388 240 31 20 chr1 158408315 158408413 -38787019 + BC1_Mm scRNA scRNA 1 99 -53 6 1793 294 95 0 0 chr1 158408413 158408455 -38786977 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 6 1793 468 221 121 8 chr1 158408581 158408713 -38786719 + B1_Mur1 SINE Alu 2 148 -1 6 1793 189 74 0 0 chr1 158408730 158408757 -38786675 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1793 1445 40 80 0 chr1 158408904 158409079 -38786353 + B2_Mm1a SINE B2 1 189 -4 6 1793 1209 56 93 0 chr1 158409098 158409259 -38786173 + B2_Mm2 SINE B2 1 176 -19 6 1793 207 0 0 0 chr1 158409259 158409282 -38786150 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1793 694 215 35 0 chr1 158409294 158409438 -38785994 + B1F SINE Alu 1 149 0 6 1793 349 230 144 45 chr1 158409613 158409745 -38785687 + B1F SINE Alu 3 147 -2 6 1793 781 119 10 0 chr1 158409955 158410074 -38785358 + B1_Mus1 SINE Alu 12 133 -15 6 1793 3130 71 2 8 chr1 158410157 158410555 -38784877 - MTA_Mm LTR MaLR 0 396 1 6 1793 368 278 71 57 chr1 158410717 158410858 -38784574 + B3A SINE B2 74 216 0 6 1793 690 133 86 29 chr1 158410879 158411018 -38784414 + B1_Mur3 SINE Alu 1 147 -2 6 1793 449 368 109 17 chr1 158411068 158411306 -38784126 + B4A SINE B4 30 289 -3 6 1793 409 311 134 71 chr1 158411605 158411941 -38783491 + L1MB8 LINE L1 1865 2221 -5113 6 1793 446 235 96 0 chr1 158412035 158412150 -38783282 + L1MB8 LINE L1 2341 2466 -4868 6 1793 792 208 89 6 chr1 158412159 158412338 -38783094 + B3 SINE B2 1 194 -22 6 1793 1252 48 0 0 chr1 158412367 158412514 -38782918 - B1_Mus1 SINE Alu 0 148 2 6 1793 261 83 0 0 chr1 158412524 158412560 -38782872 + (CCA)n Simple_repeat Simple_repeat 1 36 0 6 1793 1833 155 0 20 chr1 158412773 158413076 -38782356 + RLTR14 LTR ERV1 3 299 -83 6 1793 758 274 0 67 chr1 158413235 158413458 -38781974 + B3 SINE B2 1 208 -8 6 1793 667 272 36 16 chr1 158413495 158413689 -38781743 - B3A SINE B2 0 198 1 6 1793 339 250 9 91 chr1 158413708 158413818 -38781614 - B3 SINE B2 -1 215 115 6 1793 981 122 14 0 chr1 158413943 158414082 -38781350 + B1_Mur4 SINE Alu 3 143 -7 6 1793 300 247 135 71 chr1 158414139 158414243 -38781189 + PB1D10 SINE Alu 14 120 -7 6 1793 729 213 7 7 chr1 158414272 158414409 -38781023 + RSINE1 SINE B4 3 139 -26 6 1793 255 31 0 0 chr1 158414409 158414441 -38780991 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1793 460 261 134 0 chr1 158414498 158414632 -38780800 + RSINE1 SINE B4 12 163 -2 6 1793 258 287 64 45 chr1 158414860 158415017 -38780415 + L1MB8 LINE L1 3490 3649 -3685 6 1793 1145 274 75 21 chr1 158415058 158415535 -38779897 + L1MB8 LINE L1 6458 6960 -78 6 1793 414 262 84 90 chr1 158415537 158415692 -38779740 + B4 SINE B4 70 223 -69 6 1793 859 154 0 7 chr1 158415557 158415694 -38779738 + B1_Mus2 SINE Alu 12 147 0 6 1793 1008 235 5 23 chr1 158415736 158415954 -38779478 - B3 SINE B2 0 216 3 6 1793 902 158 7 14 chr1 158415990 158416138 -38779294 - B1_Mus2 SINE Alu 0 147 1 6 1793 230 313 0 0 chr1 158416138 158416205 -38779227 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 6 1793 498 316 0 29 chr1 158416245 158416385 -38779047 + RSINE1 SINE B4 18 153 -12 6 1793 221 0 0 33 chr1 158416385 158416415 -38779017 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1793 311 232 0 42 chr1 158416459 158416471 -38778961 + B4A SINE B4 77 85 -207 6 1793 654 202 0 15 chr1 158416471 158416602 -38778830 + B1_Mur2 SINE Alu 1 129 -20 6 1793 261 0 0 0 chr1 158416607 158416636 -38778796 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 1793 207 200 0 0 chr1 158416839 158416874 -38778558 + polypyrimidine Low_complexity Low_complexity 2 36 0 6 1793 622 244 26 12 chr1 158416990 158417145 -38778287 + ID_B1 SINE B4 81 231 -61 6 1793 1261 48 0 0 chr1 158417184 158417331 -38778101 + B1_Mus2 SINE Alu 1 147 0 6 1793 208 135 0 0 chr1 158417333 158417370 -38778062 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1793 1094 111 131 11 chr1 158417711 158417902 -38777530 + B3 SINE B2 1 214 -2 6 1793 258 279 0 56 chr1 158418127 158418199 -38777233 + ID_B1 SINE B4 70 137 -87 6 1793 290 274 9 0 chr1 158418148 158418225 -38777207 + PB1D7 SINE Alu 5 83 -231 6 1793 227 270 40 26 chr1 158418874 158418950 -38776482 - MTE2a LTR MaLR -24 355 279 6 1793 963 303 105 31 chr1 158419158 158419635 -38775797 + Lx8 LINE L1 6805 7316 -157 6 1793 255 125 0 0 chr1 158419635 158419675 -38775757 + (TTTTC)n Simple_repeat Simple_repeat 4 43 0 7 1793 668 133 17 0 chr1 158419675 158419795 -38775637 - B1_Mus1 SINE Alu 0 148 27 7 1793 210 71 0 0 chr1 158419805 158419833 -38775599 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 7 1793 969 198 25 20 chr1 158419930 158420131 -38775301 + B3 SINE B2 15 216 0 7 1793 1130 69 0 27 chr1 158420140 158420276 -38775156 + B1_Mm SINE Alu 3 138 -9 7 1793 189 0 0 0 chr1 158420276 158420297 -38775135 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1793 1130 69 0 27 chr1 158420297 158420309 -38775123 + B1_Mm SINE Alu 139 147 0 7 1793 210 306 40 40 chr1 158420326 158420401 -38775031 + PB1 SINE Alu 51 125 -2 6 1793 1105 130 36 52 chr1 158420784 158420978 -38774454 + B2_Mm1t SINE B2 2 192 -1 7 1793 396 273 116 62 chr1 158420978 158421107 -38774325 + RSINE1 SINE B4 13 148 -17 7 1793 240 86 0 0 chr1 158421130 158421165 -38774267 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 1793 277 224 165 0 chr1 158421254 158421339 -38774093 + RMER5 LTR ERV1 435 533 -1 7 1793 238 328 81 15 chr1 158421323 158421359 -38774073 - B1F1 SINE Alu -4 145 5 7 1793 373 263 10 10 chr1 158421359 158421455 -38773977 - ID_B1 SINE B4 -43 181 86 7 1793 985 269 8 24 chr1 158422110 158422361 -38773071 - B4 SINE B4 -43 249 3 7 1793 731 152 88 116 chr1 158422486 158422702 -38772730 - B3 SINE B2 -6 210 1 7 1793 225 0 0 0 chr1 158422714 158422739 -38772693 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1793 846 119 71 0 chr1 158422739 158422865 -38772567 - B1_Mur3 SINE Alu -10 139 5 7 1793 1109 193 20 0 chr1 158422892 158423089 -38772343 - B3 SINE B2 -15 201 1 7 1793 326 236 0 27 chr1 158423125 158423199 -38772233 - PB1D10 SINE Alu -9 108 37 7 1793 504 308 0 34 chr1 158423286 158423434 -38771998 + B1F2 SINE Alu 6 148 -1 7 1793 298 171 29 0 chr1 158423452 158423522 -38771910 + CT-rich Low_complexity Low_complexity 2 73 0 7 1793 516 125 0 0 chr1 158423884 158423956 -38771476 + tRNA-Glu-GAG_ tRNA tRNA 1 72 -3 7 1793 1132 82 0 0 chr1 158423968 158424114 -38771318 + B1_Mus1 SINE Alu 2 147 -1 7 1793 306 0 0 0 chr1 158424241 158424275 -38771157 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1793 692 250 25 6 chr1 158424275 158424432 -38771000 - B3 SINE B2 -28 188 29 7 1793 1807 154 128 57 chr1 158424456 158424512 -38770920 - ORR1B1 LTR MaLR 0 394 340 7 1793 319 55 18 18 chr1 158424512 158424567 -38770865 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 7 1793 1057 82 0 0 chr1 158424568 158424702 -38770730 - B1_Mm SINE Alu -12 135 2 7 1793 1807 154 128 57 chr1 158424702 158425009 -38770423 - ORR1B1 LTR MaLR -55 339 3 7 1793 269 284 73 15 chr1 158425054 158425122 -38770310 - RSINE1 SINE B4 -12 153 82 7 1793 228 35 0 0 chr1 158425744 158425773 -38769659 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1793 261 0 0 0 chr1 158425773 158425801 -38769631 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1793 683 243 128 10 chr1 158425830 158426034 -38769398 - B4 SINE B4 -62 230 3 7 1793 778 238 24 39 chr1 158426054 158426252 -38769180 + B3 SINE B2 22 216 0 7 1793 264 354 54 34 chr1 158426371 158426520 -38768912 + MLT1H LTR MaLR 148 299 -250 7 1793 1606 199 111 46 chr1 158426553 158426942 -38768490 - MTD LTR MaLR 0 419 6 7 1793 227 234 13 0 chr1 158427317 158427394 -38768038 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1793 692 225 33 54 chr1 158427394 158427611 -38767821 - B4 SINE B4 0 292 106 7 1793 2114 94 3 93 chr1 158427718 158428069 -38767363 + ORR1A4 LTR MaLR 1 319 -10 7 1793 8396 147 64 35 chr1 158428069 158429690 -38765742 + ORR1A4-int LTR MaLR 2 1669 -294 7 1793 710 227 78 22 chr1 158429672 158429852 -38765580 + B3 SINE B2 27 216 0 7 1793 1948 32 177 0 chr1 158430314 158430562 -38764870 - RLTR10B LTR ERVK 0 292 1 7 1793 1166 37 0 0 chr1 158430562 158430697 -38764735 - B1_Mus1 SINE Alu -12 136 2 7 1793 235 216 118 0 chr1 158431232 158431283 -38764149 - tRNA-Ala-GCY_ tRNA tRNA -12 63 7 7 1793 353 66 365 18 chr1 158431373 158431480 -38763952 - B2_Mm2 SINE B2 -3 192 49 7 1793 834 136 24 0 chr1 158431558 158431683 -38763749 - B2_Mm1t SINE B2 -65 128 1 7 1793 591 112 0 0 chr1 158431895 158431984 -38763448 + (TC)n Simple_repeat Simple_repeat 2 90 0 7 1793 446 328 75 82 chr1 158432012 158432304 -38763128 - B4 SINE B4 -1 291 2 7 1793 825 149 60 13 chr1 158432376 158432535 -38762897 - B1_Mur1 SINE Alu 0 311 9 7 1793 921 244 29 5 chr1 158432564 158432774 -38762658 - ID_B1 SINE B4 -9 215 1 7 1793 1139 161 33 38 chr1 158432808 158432939 -38762493 - B3 SINE B2 -4 212 78 7 1793 3158 68 19 0 chr1 158432939 158433352 -38762080 + BGLII LTR ERVK 1 421 0 7 1793 1139 161 33 38 chr1 158433352 158433433 -38761999 - B3 SINE B2 -139 77 1 7 1793 21 36 0 0 chr1 158433435 158433463 -38761969 + AT_rich Low_complexity Low_complexity 1 28 0 7 1793 246 200 0 0 chr1 158433857 158433907 -38761525 + B3A SINE B2 1 50 -148 7 1793 2013 159 37 47 chr1 158433912 158434315 -38761117 - RMER4A LTR ERVK -4 462 64 7 1793 402 21 0 0 chr1 158434322 158434369 -38761063 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1793 393 39 0 0 chr1 158434369 158434419 -38761013 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1793 1229 54 0 0 chr1 158434438 158434585 -38760847 + B1_Mm SINE Alu 1 147 0 7 1793 804 197 14 0 chr1 158434779 158434926 -38760506 - B1_Mur4 SINE Alu -1 149 1 7 1793 340 336 54 39 chr1 158435031 158435161 -38760271 + ID_B1 SINE B4 92 223 -1 7 1793 884 174 63 11 chr1 158435285 158435459 -38759973 - MTC LTR MaLR 0 421 239 7 1793 401 237 86 11 chr1 158435459 158435580 -38759852 - B3A SINE B2 -27 168 49 7 1793 24 0 0 0 chr1 158435616 158435640 -38759792 + AT_rich Low_complexity Low_complexity 1 24 0 7 1793 309 284 0 0 chr1 158435761 158435828 -38759604 + Lx8 LINE L1 6549 6615 -858 7 1793 686 239 41 72 chr1 158435882 158436076 -38759356 - B3A SINE B2 -10 188 1 7 1793 231 270 40 0 chr1 158436314 158436388 -38759044 + ID4_ SINE ID 4 80 -3 7 1793 304 274 73 64 chr1 158436569 158436662 -38758770 - PB1D10 SINE Alu -6 111 17 7 1793 2107 110 84 20 chr1 158436662 158437005 -38758427 - ORR1B2 LTR MaLR -2 365 1 7 1793 304 274 73 64 chr1 158437005 158437020 -38758412 - PB1D10 SINE Alu -101 16 2 7 1793 207 0 0 0 chr1 158437052 158437075 -38758357 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1793 772 246 31 10 chr1 158437115 158437308 -38758124 - B3A SINE B2 0 198 2 7 1793 754 291 9 5 chr1 158437317 158437531 -38757901 - ID_B1 SINE B4 -9 215 1 7 1793 326 316 43 9 chr1 158437668 158437783 -38757649 + MLT2B4 LTR ERVL 302 420 -136 7 1793 432 324 30 72 chr1 158437801 158437947 -38757485 + MLT1J-int LTR MaLR 235 374 -1013 7 1793 2470 151 156 4 chr1 158437947 158438446 -38756986 - RMER15 LTR ERVL 0 575 1 7 1793 432 324 30 72 chr1 158438446 158438535 -38756897 + MLT1J-int LTR MaLR 375 459 -928 7 1793 857 186 7 0 chr1 158438648 158438793 -38756639 + B1_Mus1 SINE Alu 3 148 0 7 1793 318 256 87 47 chr1 158439013 158439094 -38756338 - L1MEe LINE L1 -4029 825 736 7 1793 1196 54 0 13 chr1 158439094 158439243 -38756189 - B1_Mus2 SINE Alu 0 147 1 7 1793 318 256 87 47 chr1 158439243 158439288 -38756144 - L1MEe LINE L1 -4119 735 694 7 1793 210 253 92 13 chr1 158439312 158439388 -38756044 + ID4 SINE ID 2 83 0 7 1793 392 279 71 208 chr1 158439509 158439564 -38755868 - MTE2a LTR MaLR 0 419 377 7 1793 1190 55 0 7 chr1 158439564 158439711 -38755721 + B1_Mus2 SINE Alu 2 147 0 7 1793 392 279 71 208 chr1 158439711 158439806 -38755626 - MTE2a LTR MaLR -43 376 292 7 1793 538 223 92 46 chr1 158439806 158439980 -38755452 + B3A SINE B2 1 182 -16 7 1793 427 255 90 120 chr1 158439980 158440201 -38755231 - MTE2a LTR MaLR -128 291 70 7 1793 483 63 0 0 chr1 158440201 158440264 -38755168 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1793 427 264 83 152 chr1 158440264 158440298 -38755134 - MTE2a LTR MaLR -319 100 58 7 1793 3297 62 10 0 chr1 158440309 158440712 -38754720 + MTB_Mm LTR MaLR 1 407 0 7 1793 943 69 15 0 chr1 158440761 158440892 -38754540 - URR1B DNA MER1_type 0 225 93 7 1793 273 299 0 125 chr1 158440887 158440975 -38754457 - ID_B1 SINE B4 -54 170 94 7 1793 515 312 85 23 chr1 158441001 158441178 -38754254 + MER5A DNA MER1_type 1 188 -1 7 1793 540 264 31 125 chr1 158441301 158441461 -38753971 + MTE2a LTR MaLR 2 146 -233 7 1793 2091 140 30 79 chr1 158441441 158441845 -38753587 + ORR1B1 LTR MaLR 11 394 0 7 1793 491 272 117 31 chr1 158441845 158442008 -38753424 + MTE2a LTR MaLR 151 327 -52 7 1793 1404 56 17 11 chr1 158442017 158442197 -38753235 - B2_Mm2 SINE B2 -14 181 1 7 1793 368 184 235 39 chr1 158442201 158442354 -38753078 - B2_Mm2 SINE B2 -12 183 1 7 1793 1036 207 29 5 chr1 158442372 158442576 -38752856 - B3 SINE B2 -5 211 3 7 1793 1159 242 141 47 chr1 158443132 158443545 -38751887 - MYSERV6-int LTR ERVK -154 3084 2628 7 1793 1194 104 59 21 chr1 158443545 158443731 -38751701 - B2_Mm2 SINE B2 -1 194 2 7 1793 366 231 130 118 chr1 158443731 158443902 -38751530 - MYSERV6-int LTR ERVK -2248 3889 3721 7 1793 2172 102 69 0 chr1 158443981 158444286 -38751146 - ORR1A2 LTR MaLR 0 327 2 7 1793 463 192 0 0 chr1 158444329 158444407 -38751025 - MYSERV6-int LTR ERVK -2461 3676 3599 7 1793 2035 97 21 43 chr1 158444434 158444713 -38750719 + ORR1A3 LTR MaLR 1 285 -41 7 1793 1309 111 11 0 chr1 158444713 158444902 -38750530 + B2_Mm1t SINE B2 2 192 -1 7 1793 2035 97 21 43 chr1 158444902 158444947 -38750485 + ORR1A3 LTR MaLR 286 318 -8 7 1793 1917 239 108 76 chr1 158444958 158446153 -38749279 - MYSERV6-int LTR ERVK -277 8682 8053 7 1793 1164 75 0 0 chr1 158446154 158446300 -38749132 + B1_Mus2 SINE Alu 2 147 0 7 1793 180 0 0 0 chr1 158446335 158446355 -38749077 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 7 1793 834 52 0 9 chr1 158446359 158446475 -38748957 - B1_Mus1 SINE Alu 0 148 34 7 1793 1042 197 55 108 chr1 158446475 158446687 -38748745 - RLTR19-int LTR ERVK -4843 1294 1090 7 1793 1640 16 22 0 chr1 158446687 158446871 -38748561 - B2_Mm1a SINE B2 -4 189 2 7 1793 1042 197 55 108 chr1 158446871 158446983 -38748449 - RLTR19-int LTR ERVK -5048 1089 987 7 1793 407 200 25 0 chr1 158447102 158447182 -38748250 - RLTR19-int LTR ERVK -5153 984 903 7 1793 256 226 19 0 chr1 158447375 158447428 -38748004 - RLTR19-int LTR ERVK -5283 854 801 7 1793 368 180 70 54 chr1 158447499 158447628 -38747804 - MYSERV-int LTR ERVK -1081 5469 5339 7 1793 819 48 0 0 chr1 158447716 158447820 -38747612 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1793 1199 48 0 7 chr1 158447836 158447984 -38747448 - B1_Mm SINE Alu 0 147 1 8 1793 183 156 0 0 chr1 158448202 158448234 -38747198 + (TTA)n Simple_repeat Simple_repeat 2 33 0 8 1793 182 67 89 0 chr1 158448404 158448449 -38746983 + GA-rich Low_complexity Low_complexity 4 52 0 8 1793 4013 194 40 62 chr1 158448607 158448776 -38746656 - RodERV21-int LTR ERV1 -4018 973 811 8 1793 1511 73 5 0 chr1 158448776 158448967 -38746465 + B2_Mm1t SINE B2 2 193 0 8 1793 4013 194 40 62 chr1 158448967 158449780 -38745652 - RodERV21-int LTR ERV1 -4181 810 13 8 1793 1250 34 0 0 chr1 158449884 158450031 -38745401 + B1_Mm SINE Alu 1 147 0 8 1793 189 0 0 0 chr1 158450031 158450052 -38745380 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1793 388 282 72 9 chr1 158450520 158450631 -38744801 - ID_B1 SINE B4 -4 220 103 8 1793 740 216 56 45 chr1 158450906 158451085 -38744347 - B3A SINE B2 -16 182 2 8 1793 572 237 98 0 chr1 158451174 158451347 -38744085 - MER20 DNA MER1_type 0 219 30 8 1793 305 187 120 11 chr1 158451386 158451478 -38743954 - MER53 DNA hAT -91 102 1 8 1793 315 0 0 0 chr1 158451625 158451660 -38743772 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1793 444 211 108 123 chr1 158451660 158451790 -38743642 - RSINE1 SINE B4 -34 131 4 8 1793 275 263 158 0 chr1 158451886 158451981 -38743451 + L2a LINE L2 3316 3425 -1 8 1793 238 278 77 11 chr1 158452058 158452149 -38743283 + PB1 SINE Alu 12 108 -19 8 1793 244 250 124 11 chr1 158452183 158452272 -38743160 + B4 SINE B4 9 107 -185 8 1793 1510 142 33 74 chr1 158452273 158452609 -38742823 - RLTRETN_Mm LTR ERVK 0 322 1 8 1793 1803 116 7 7 chr1 158452609 158452879 -38742553 - MMETn-int LTR ERVK 0 4844 4575 8 1793 243 0 0 0 chr1 158452879 158452906 -38742526 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1793 1722 21 0 0 chr1 158452906 158453098 -38742334 - B2_Mm1a SINE B2 0 193 2 8 1793 6735 99 30 23 chr1 158453098 158454096 -38741336 - MMETn-int LTR ERVK -254 4590 3586 8 1793 300 111 0 0 chr1 158455704 158455749 -38739683 + (T)n Simple_repeat Simple_repeat 1 45 0 8 1793 22 35 0 0 chr1 158456782 158456811 -38738621 + AT_rich Low_complexity Low_complexity 1 29 0 8 1793 14400 203 23 16 chr1 158456813 158460515 -38734917 - ETnERV2-int LTR ERVK -1239 6167 1790 8 1793 1584 22 0 27 chr1 158460676 158460862 -38734570 - B2_Mm1t SINE B2 -11 182 2 8 1793 13022 80 2 9 chr1 158460929 158462599 -38732833 - ETnERV2-int LTR ERVK -1654 1660 2 8 1793 1635 144 27 63 chr1 158462600 158462934 -38732498 - RLTRETN_Mm LTR ERVK 0 322 1 8 1793 441 239 101 17 chr1 158462934 158463053 -38732379 + B4A SINE B4 103 231 -61 8 1793 673 287 85 19 chr1 158463058 158463317 -38732115 + B4A SINE B4 5 280 -12 8 1793 235 177 16 16 chr1 158463330 158463393 -38732039 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1793 304 235 0 0 chr1 158463393 158463461 -38731971 + B4A SINE B4 224 291 -1 8 1793 606 63 0 0 chr1 158463464 158463543 -38731889 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 8 1793 280 224 104 0 chr1 158463550 158463617 -38731815 + ID4_ SINE ID 1 74 -9 8 1793 1860 198 26 36 chr1 158463699 158463915 -38731517 - MTD LTR MaLR -3 416 204 8 1793 1586 42 10 5 chr1 158463915 158464107 -38731325 - B2_Mm1t SINE B2 0 193 1 8 1793 1860 198 26 36 chr1 158464107 158464310 -38731122 - MTD LTR MaLR -216 203 1 8 1793 1068 220 5 5 chr1 158464423 158464633 -38730799 - B3 SINE B2 -6 210 1 8 1793 811 161 49 0 chr1 158464695 158464838 -38730594 + B1_Mur4 SINE Alu 1 150 0 8 1793 634 217 6 6 chr1 158464838 158465000 -38730432 + GA-rich Low_complexity Low_complexity 1 162 0 8 1793 1413 69 32 5 chr1 158465004 158465193 -38730239 + B2_Mm2 SINE B2 2 195 0 8 1793 201 139 0 0 chr1 158465194 158465237 -38730195 + (A)n Simple_repeat Simple_repeat 1 43 0 8 224 1169 58 0 0 chr1 158465940 158466078 -38729354 - B1_Mus1 SINE Alu -10 138 1 8 1794 531 277 25 25 chr1 158466221 158466384 -38729048 + RSINE1 SINE B4 1 163 -2 8 1794 265 250 51 26 chr1 158466413 158466491 -38728941 + ID4 SINE ID 2 81 -2 8 1794 947 93 7 0 chr1 158466623 158466763 -38728669 + B1_Mus1 SINE Alu 8 148 0 8 1794 227 148 18 18 chr1 158466764 158466819 -38728613 + A-rich Low_complexity Low_complexity 1 55 0 8 1794 238 266 143 38 chr1 158466858 158466991 -38728441 + MIR SINE MIR 116 262 0 8 1794 1973 145 67 6 chr1 158467125 158467471 -38727961 - ORR1B2 LTR MaLR 0 367 1 8 1794 348 213 13 0 chr1 158467719 158467794 -38727638 - B1_Mur3 SINE Alu -72 77 2 8 1794 357 293 0 57 chr1 158467826 158467876 -38727556 + PB1D10 SINE Alu 2 49 -68 8 1794 1312 256 38 36 chr1 158467876 158468294 -38727138 + MTD LTR MaLR 1 419 0 8 1794 357 293 0 57 chr1 158468294 158468366 -38727066 + PB1D10 SINE Alu 50 117 0 8 1794 580 289 25 19 chr1 158468394 158468553 -38726879 + RSINE1 SINE B4 3 162 -3 8 1794 1045 130 16 43 chr1 158468650 158468835 -38726597 - B2_Mm2 SINE B2 -15 180 1 8 1794 921 19 0 0 chr1 158468844 158468951 -38726481 + (TCC)n Simple_repeat Simple_repeat 3 109 0 8 1794 761 211 14 0 chr1 158469099 158469246 -38726186 - B1_Mur1 SINE Alu 0 149 1 8 1794 901 153 42 0 chr1 158469482 158469626 -38725806 - B1_Mur4 SINE Alu 0 150 1 8 1794 414 0 0 0 chr1 158469768 158469814 -38725618 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1794 547 288 18 28 chr1 158469991 158470209 -38725223 + B3 SINE B2 1 216 0 8 1794 531 208 0 1 chr1 158471050 158471157 -38724275 + PB1D9 SINE Alu 1 105 -15 8 1794 225 0 0 0 chr1 158471179 158471204 -38724228 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 1794 5537 90 19 40 chr1 158471204 158472050 -38723382 + Lx LINE L1 5824 6651 -3 8 1794 1207 49 14 0 chr1 158472059 158472203 -38723229 + B1_Mm SINE Alu 2 147 0 8 1794 307 0 0 44 chr1 158472206 158472251 -38723181 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1794 2131 184 14 39 chr1 158472356 158472797 -38722635 + Lx4B LINE L1 6629 7058 0 8 1794 419 223 59 37 chr1 158472822 158472957 -38722475 + B1F1 SINE Alu 3 140 -9 8 1794 390 273 48 112 chr1 158472961 158472978 -38722454 + B4 SINE B4 77 124 -168 8 1794 807 177 0 7 chr1 158472978 158473120 -38722312 + B1_Mur4 SINE Alu 10 150 0 8 1794 216 200 22 0 chr1 158473130 158473175 -38722257 + ID4 SINE ID 1 46 -37 8 1794 510 220 64 0 chr1 158473226 158473335 -38722097 + PB1D9 SINE Alu 4 119 -1 8 1794 223 214 0 51 chr1 158473396 158473455 -38721977 + PB1 SINE Alu 13 68 -59 8 1794 1360 78 0 45 chr1 158473484 158473657 -38721775 + B2_Mm2 SINE B2 1 170 -25 8 1794 1411 84 5 5 chr1 158473657 158473848 -38721584 + B2_Mm1a SINE B2 1 191 -2 8 1794 1360 78 0 45 chr1 158473848 158473875 -38721557 + B2_Mm2 SINE B2 171 192 -3 8 1794 742 149 0 41 chr1 158474609 158474756 -38720676 - B2_Mm2 SINE B2 -53 142 2 8 1794 449 318 98 0 chr1 158474797 158474929 -38720503 - RSINE1 SINE B4 -10 155 11 8 1794 301 260 26 0 chr1 158475510 158475587 -38719845 - ID4 SINE ID -3 80 2 8 1794 390 264 0 36 chr1 158475714 158475824 -38719608 + PB1D10 SINE Alu 1 106 -11 8 1794 491 234 46 15 chr1 158475929 158476059 -38719373 + ID_B1 SINE B4 81 214 -10 8 1794 573 15 0 0 chr1 158476378 158476444 -38718988 + (TTCTC)n Simple_repeat Simple_repeat 2 67 0 8 1794 1358 51 11 0 chr1 158476452 158476630 -38718802 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 1794 739 185 46 0 chr1 158476630 158476760 -38718672 - B1_Mur1 SINE Alu -13 136 1 8 1794 1337 114 0 0 chr1 158476771 158476964 -38718468 - B2_Mm2 SINE B2 0 195 3 8 1794 317 176 0 56 chr1 158477034 158477106 -38718326 - Lx8 LINE L1 -3 7470 7403 8 1794 801 201 78 21 chr1 158477163 158477356 -38718076 - Lx8 LINE L1 -582 6891 6688 8 1794 762 270 39 10 chr1 158477835 158478041 -38717391 - B3 SINE B2 0 216 5 8 1794 184 294 0 0 chr1 158478066 158478117 -38717315 + L4 LINE RTE 448 498 -1531 8 1794 396 0 0 0 chr1 158478570 158478614 -38716818 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 8 1794 261 0 0 0 chr1 158479023 158479052 -38716380 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1794 308 300 89 37 chr1 158479073 158479091 -38716341 - ID_B1 SINE B4 0 224 208 8 1794 1170 88 0 0 chr1 158479091 158479239 -38716193 - B1_Mus1 SINE Alu 0 148 1 8 1794 308 300 89 37 chr1 158479239 158479355 -38716077 - ID_B1 SINE B4 -17 207 83 8 1794 281 153 48 48 chr1 158479358 158479420 -38716012 + MLT1H2 LTR MaLR 428 489 0 8 1794 695 269 5 20 chr1 158480025 158480222 -38715210 + B3A SINE B2 5 198 0 8 1794 695 271 98 11 chr1 158480282 158480465 -38714967 - ID_B1 SINE B4 -21 203 5 8 1794 598 277 52 0 chr1 158481125 158481280 -38714152 - RSINE1 SINE B4 0 165 3 8 1794 340 284 134 0 chr1 158481473 158481600 -38713832 + RMER5 LTR ERV1 38 181 -353 8 1794 252 0 0 0 chr1 158481634 158481662 -38713770 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1794 1247 41 0 0 chr1 158481662 158481809 -38713623 - B1_Mus2 SINE Alu 0 147 1 8 1794 1000 228 5 5 chr1 158481829 158482036 -38713396 - B3 SINE B2 -9 207 1 8 1794 1084 52 0 7 chr1 158482067 158482204 -38713228 - B1_Mm SINE Alu -11 136 1 8 1794 291 203 0 30 chr1 158482205 158482271 -38713161 + RMER5 LTR ERV1 171 234 -300 8 1794 814 235 22 31 chr1 158482329 158482557 -38712875 + RMER5 LTR ERV1 253 478 -56 8 1794 1410 74 26 16 chr1 158482834 158483026 -38712406 - B2_Mm2 SINE B2 -1 194 1 8 1794 279 0 0 0 chr1 158483322 158483353 -38712079 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1794 364 260 40 10 chr1 158483630 158483731 -38711701 + PB1D7 SINE Alu 9 112 -8 8 1794 645 204 68 0 chr1 158483990 158484122 -38711310 + B1_Mur2 SINE Alu 1 141 -8 8 1794 362 267 87 51 chr1 158484169 158484307 -38711125 + Lx8 LINE L1 6211 6353 -1120 8 1794 246 62 0 0 chr1 158484352 158484384 -38711048 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 1794 1144 55 14 14 chr1 158484391 158484538 -38710894 - B1_Mur4 SINE Alu 0 150 4 8 1794 300 53 0 0 chr1 158484576 158484614 -38710818 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1794 521 254 50 14 chr1 158484616 158484756 -38710676 - RSINE1 SINE B4 -20 145 1 8 1794 1856 256 52 35 chr1 158484756 158485241 -38710191 + Lx8 LINE L1 6350 6842 -631 8 1794 346 262 0 0 chr1 158485246 158485326 -38710106 + Lx8 LINE L1 7056 7135 -338 8 1794 3331 145 51 90 chr1 158485325 158485992 -38709440 + Lx5 LINE L1 6407 7047 -3 8 1794 777 197 21 0 chr1 158486004 158486146 -38709286 + Lx8 LINE L1 7118 7262 -211 8 1794 180 111 0 0 chr1 158486605 158486632 -38708800 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1794 220 339 0 0 chr1 158486743 158486802 -38708630 - MIR SINE MIR -190 72 14 9 1794 296 286 9 75 chr1 158487008 158487114 -38708318 - PB1 SINE Alu -8 119 21 9 1794 227 284 45 0 chr1 158487144 158487211 -38708221 - PB1D10 SINE Alu 0 117 48 9 1794 278 273 134 131 chr1 158487407 158487698 -38707734 - B4 SINE B4 0 292 1 9 1794 221 241 56 0 chr1 158487748 158487802 -38707630 + ID2 SINE ID 13 69 -14 9 1794 1378 89 5 5 chr1 158488134 158488325 -38707107 - B2_Mm1a SINE B2 -2 191 1 9 1794 24 0 0 0 chr1 158488814 158488838 -38706594 + GC_rich Low_complexity Low_complexity 1 24 0 9 1794 205 208 19 19 chr1 158489354 158489408 -38706024 + (GGGTG)n Simple_repeat Simple_repeat 1 54 0 9 1794 22 0 0 0 chr1 158490115 158490137 -38705295 + AT_rich Low_complexity Low_complexity 1 22 0 9 1794 403 218 236 0 chr1 158490138 158490248 -38705184 - RSINE1 SINE B4 0 165 30 9 1794 351 0 0 0 chr1 158490459 158490498 -38704934 + (GAA)n Simple_repeat Simple_repeat 1 39 0 9 1794 500 228 123 7 chr1 158490957 158491103 -38704329 - B3 SINE B2 -9 207 45 9 1794 300 316 0 13 chr1 158491144 158491221 -38704211 + B1_Mur3 SINE Alu 4 79 -70 9 1794 1082 58 51 0 chr1 158491221 158491359 -38704073 + B1_Mus2 SINE Alu 3 147 0 9 1794 238 236 0 0 chr1 158491858 158491913 -38703519 + ID4 SINE ID 2 56 -27 9 1794 431 261 25 8 chr1 158492078 158492198 -38703234 + B1F SINE Alu 22 143 -6 9 1794 742 242 112 0 chr1 158492271 158492449 -38702983 + B3A SINE B2 1 198 0 9 1794 29 0 0 0 chr1 158492486 158492515 -38702917 + AT_rich Low_complexity Low_complexity 1 29 0 9 1794 285 146 0 0 chr1 158492515 158492563 -38702869 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1794 266 125 21 0 chr1 158492576 158492624 -38702808 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1794 285 280 76 46 chr1 158492647 158492778 -38702654 - RSINE1 SINE B4 -5 160 26 9 1794 240 59 0 0 chr1 158492783 158492817 -38702615 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1794 910 50 141 0 chr1 158492817 158492938 -38702494 - B1_Mus2 SINE Alu -9 138 1 9 1794 577 266 29 0 chr1 158493674 158493812 -38701620 - ID_B1 SINE B4 -2 222 85 9 1794 281 250 17 0 chr1 158494018 158494078 -38701354 + B1F1 SINE Alu 2 62 -87 9 1794 401 195 13 13 chr1 158494381 158494459 -38700973 + B4A SINE B4 197 274 -18 9 1794 240 308 12 37 chr1 158495013 158495094 -38700338 - B1F2 SINE Alu -69 80 2 9 1794 246 286 80 106 chr1 158495101 158495300 -38700132 - B3A SINE B2 0 198 5 9 1794 532 195 195 0 chr1 158496085 158496208 -38699224 + B1_Mm SINE Alu 1 147 0 9 1794 1122 95 7 0 chr1 158496246 158496393 -38699039 - B1_Mus1 SINE Alu 0 148 1 9 1794 681 196 185 0 chr1 158496424 158496597 -38698835 - B3 SINE B2 -10 206 2 9 1794 1643 153 173 27 chr1 158496730 158497105 -38698327 - RMER10A LTR ERVL 0 442 13 9 1794 492 231 19 0 chr1 158497290 158497394 -38698038 - B1F1 SINE Alu -9 140 35 9 1794 183 100 0 0 chr1 158497695 158497725 -38697707 + (TTTAG)n Simple_repeat Simple_repeat 3 32 0 9 1794 494 168 91 27 chr1 158497768 158497878 -38697554 - PB1D10 SINE Alu 0 117 1 9 1794 243 211 145 66 chr1 158497906 158497928 -38697504 - ID SINE ID -139 85 4 9 1794 253 184 0 93 chr1 158497928 158497982 -38697450 - ID4 SINE ID -31 52 4 9 1794 22 0 0 0 chr1 158498180 158498202 -38697230 + AT_rich Low_complexity Low_complexity 1 22 0 9 1794 295 304 78 0 chr1 158498678 158498793 -38696639 - MER20 DNA MER1_type -57 162 39 9 1794 521 200 23 91 chr1 158498955 158499087 -38696345 - B1_Mur3 SINE Alu -22 127 5 9 1794 478 110 0 0 chr1 158499143 158499225 -38696207 - L1Md_F2 LINE L1 0 6582 6501 9 1794 334 250 276 0 chr1 158499252 158499368 -38696064 - RSINE1 SINE B4 -15 150 3 9 1794 234 0 0 0 chr1 158499511 158499537 -38695895 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1794 1195 48 14 0 chr1 158499609 158499755 -38695677 + B1_Mus1 SINE Alu 1 148 0 9 1794 253 286 0 0 chr1 158500030 158500093 -38695339 - ID_B1 SINE B4 -8 216 154 1 1794 300 234 79 26 chr1 158500474 158500588 -38694844 + B1F1 SINE Alu 11 130 -19 2 1794 22 0 0 0 chr1 158500698 158500720 -38694712 + AT_rich Low_complexity Low_complexity 1 22 0 3 1794 780 265 99 18 chr1 158500767 158501044 -38694388 - B4A SINE B4 -3 289 2 4 1794 350 265 19 29 chr1 158501044 158501140 -38694292 - B1_Mus2 SINE Alu -52 95 1 5 1794 642 248 20 7 chr1 158501212 158501358 -38694074 - B1_Mur1 SINE Alu -1 148 1 6 1794 294 348 51 19 chr1 158501500 158501658 -38693774 + MIR SINE MIR 98 260 -2 7 1794 279 266 47 0 chr1 158501703 158501767 -38693665 - ID4 SINE ID -6 77 11 8 1794 1153 90 5 87 chr1 158501813 158501843 -38693589 - B2_Mm2 SINE B2 0 195 182 9 1794 3713 59 4 14 chr1 158501843 158502326 -38693106 + L1Md_F2 LINE L1 6105 6582 0 1 1794 1153 90 5 87 chr1 158502326 158502502 -38692930 - B2_Mm2 SINE B2 -14 181 6 9 1794 1172 54 0 13 chr1 158502537 158502687 -38692745 + B1_Mus1 SINE Alu 1 148 0 1 1794 399 184 161 0 chr1 158502930 158503017 -38692415 + ID_B1 SINE B4 112 212 -12 1 1794 388 246 123 29 chr1 158503662 158503800 -38691632 - RSINE1 SINE B4 -6 159 9 1 1794 948 244 192 18 chr1 158503973 158504301 -38691131 - MTD LTR MaLR -21 398 7 1 1794 211 174 21 42 chr1 158504304 158504352 -38691080 - RSINE1 SINE B4 -105 60 14 1 1794 323 275 0 0 chr1 158504364 158504444 -38690988 - PB1D7 SINE Alu -1 119 40 1 1794 233 275 31 71 chr1 158504501 158504599 -38690833 - B4 SINE B4 -70 222 129 1 1794 216 0 0 0 chr1 158504986 158505010 -38690422 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1794 1203 48 7 0 chr1 158505027 158505173 -38690259 + B1_Mus2 SINE Alu 1 147 0 1 1794 679 182 7 36 chr1 158505441 158505578 -38689854 - B1_Mus1 SINE Alu -10 138 6 2 1794 492 62 0 0 chr1 158506438 158506502 -38688930 + (TTA)n Simple_repeat Simple_repeat 2 65 0 2 1794 688 186 0 43 chr1 158506502 158506642 -38688790 - ID_B1 SINE B4 -12 212 83 2 1794 280 277 18 98 chr1 158506657 158506769 -38688663 - B1F SINE Alu -21 128 26 2 1794 513 285 123 15 chr1 158506817 158507012 -38688420 - B3A SINE B2 -11 205 6 2 1794 353 232 0 0 chr1 158507622 158507691 -38687741 - ID4_ SINE ID 0 83 15 2 1794 697 250 72 0 chr1 158507811 158508019 -38687413 + MER68 LTR ERVL 42 264 -299 2 1794 2253 158 58 38 chr1 158508246 158508325 -38687107 - RMER20A LTR ERVK -7 509 439 2 1794 633 27 0 0 chr1 158508325 158508400 -38687032 + (TGG)n Simple_repeat Simple_repeat 3 77 0 2 1794 2253 158 58 38 chr1 158508400 158508819 -38686613 - RMER20A LTR ERVK -78 438 1 2 1794 473 200 26 35 chr1 158509101 158509215 -38686217 + B1_Mur2 SINE Alu 37 149 0 2 1794 294 293 27 0 chr1 158509225 158509300 -38686132 - PB1D7 SINE Alu -22 98 22 3 1794 493 235 0 0 chr1 158509655 158509757 -38685675 + PB1D9 SINE Alu 1 102 -18 3 1794 506 277 8 0 chr1 158509833 158509952 -38685480 - PB1 SINE Alu -5 122 3 3 1794 246 267 17 0 chr1 158510054 158510114 -38685318 - L1MEe LINE L1 -4677 177 117 3 1794 348 257 28 42 chr1 158510131 158510273 -38685159 - L1MB3 LINE L1 0 6183 6044 3 1794 713 164 30 0 chr1 158510274 158510408 -38685024 - B1_Mus2 SINE Alu 0 147 10 3 1794 245 236 68 14 chr1 158510882 158510955 -38684477 - ID_B1 SINE B4 -5 219 143 3 1794 275 212 232 0 chr1 158510996 158511095 -38684337 - L1MB3 LINE L1 -520 5663 5542 3 1794 864 220 220 13 chr1 158511098 158511398 -38684034 + ORR1D2 LTR MaLR 1 362 -8 3 1794 310 237 0 13 chr1 158511400 158511477 -38683955 + MTD LTR MaLR 331 406 -13 3 1794 679 266 106 95 chr1 158511486 158511899 -38683533 - ORR1D2 LTR MaLR 0 374 2 3 1794 267 234 136 61 chr1 158511912 158512044 -38683388 - L1MB3 LINE L1 -647 5536 5395 3 1794 229 216 68 0 chr1 158512055 158512129 -38683303 - L1MB3 LINE L1 -826 5357 5279 3 1794 237 280 64 56 chr1 158512197 158512322 -38683110 - MLT1F1 LTR MaLR 0 680 555 4 1794 248 157 39 0 chr1 158512341 158512392 -38683040 - MLT1F1 LTR MaLR -175 394 342 4 1794 399 189 48 32 chr1 158512565 158512691 -38682741 + BC1_Mm scRNA scRNA 2 129 -23 4 1794 620 252 30 0 chr1 158512715 158512850 -38682582 - ID_B1 SINE B4 0 224 86 4 1794 1414 176 196 12 chr1 158513278 158513700 -38681732 - MT2A LTR ERVL -8 525 26 4 1794 218 255 135 21 chr1 158513788 158513884 -38681548 + PB1D9 SINE Alu 13 119 -1 4 1794 31 0 0 0 chr1 158514107 158514138 -38681294 + AT_rich Low_complexity Low_complexity 1 31 0 4 1794 645 174 0 42 chr1 158514151 158514295 -38681137 + B1_Mus2 SINE Alu 9 146 -1 4 1794 576 276 14 7 chr1 158514701 158514843 -38680589 - RSINE1 SINE B4 -22 143 1 4 1794 305 267 0 95 chr1 158515103 158515219 -38680213 + PB1D10 SINE Alu 5 109 -8 4 1794 226 226 32 16 chr1 158515397 158515460 -38679972 - ID_B1 SINE B4 -16 208 145 4 1794 320 286 0 0 chr1 158515874 158515944 -38679488 - ID4_ SINE ID -11 72 3 5 1794 432 0 0 0 chr1 158515985 158516033 -38679399 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1794 506 231 34 8 chr1 158516033 158516151 -38679281 - RSINE1 SINE B4 -41 124 4 5 1794 282 226 224 0 chr1 158516196 158516290 -38679142 - PB1D10 SINE Alu -2 125 12 5 1794 573 96 0 0 chr1 158516325 158516419 -38679013 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 1794 402 21 0 0 chr1 158516419 158516466 -38678966 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1794 806 60 198 0 chr1 158516574 158516690 -38678742 - B1_Mus1 SINE Alu -8 140 2 5 1794 3531 212 116 12 chr1 158517464 158518200 -38677232 + Lx5 LINE L1 6235 7046 -4 5 1794 1131 75 0 7 chr1 158518213 158518361 -38677071 + B1_Mus2 SINE Alu 1 147 0 5 1794 27 29 0 0 chr1 158518390 158518424 -38677008 + AT_rich Low_complexity Low_complexity 1 34 0 5 1794 560 271 112 15 chr1 158518474 158518680 -38676752 - Lx8 LINE L1 -135 7338 7113 6 1794 795 210 139 21 chr1 158518682 158519009 -38676423 + Lx8 LINE L1 5632 6015 -1629 6 1794 2155 115 9 6 chr1 158519039 158519362 -38676070 + ORR1A2 LTR MaLR 1 324 -3 6 1794 250 274 160 0 chr1 158519408 158519514 -38675918 - B3A SINE B2 -13 203 81 6 1794 291 169 100 38 chr1 158519561 158519641 -38675791 - B1_Mur2 SINE Alu -1 148 64 6 1794 271 224 35 0 chr1 158519705 158519763 -38675669 + ID4 SINE ID 8 67 -16 6 1794 853 244 55 5 chr1 158519826 158520028 -38675404 - B3 SINE B2 0 216 5 6 1794 378 0 0 0 chr1 158520284 158520326 -38675106 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1794 365 0 22 0 chr1 158520326 158520370 -38675062 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1794 477 297 39 0 chr1 158520380 158520508 -38674924 - RSINE1 SINE B4 -29 136 4 6 1794 40 49 0 0 chr1 158520987 158521048 -38674384 + AT_rich Low_complexity Low_complexity 1 61 0 7 1794 315 0 0 0 chr1 158521462 158521497 -38673935 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1794 639 286 61 18 chr1 158521497 158521725 -38673707 - B4A SINE B4 -51 241 4 7 1794 513 298 7 0 chr1 158521799 158521940 -38673492 - ID_B1 SINE B4 -2 222 81 7 1794 1853 68 4 20 chr1 158522058 158522313 -38673119 - L1_Mus2 LINE L1 0 6566 6316 7 1794 339 25 0 0 chr1 158522342 158522382 -38673050 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1794 682 266 46 6 chr1 158522416 158522590 -38672842 - B3 SINE B2 -35 181 1 7 1794 353 290 68 7 chr1 158522634 158522780 -38672652 - RSINE1 SINE B4 -8 157 3 7 1794 226 254 42 14 chr1 158522865 158522937 -38672495 - RSINE1 SINE B4 0 165 92 7 1794 216 0 0 0 chr1 158522956 158522980 -38672452 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1794 252 0 0 0 chr1 158523004 158523032 -38672400 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1794 270 279 0 0 chr1 158523039 158523100 -38672332 - RSINE1 SINE B4 -99 66 6 7 1794 30 27 0 0 chr1 158523113 158523150 -38672282 + AT_rich Low_complexity Low_complexity 1 37 0 8 1794 1001 119 14 0 chr1 158524036 158524179 -38671253 + B1_Mus2 SINE Alu 1 145 -2 8 1794 1096 109 6 0 chr1 158524291 158524456 -38670976 + B2_Mm1t SINE B2 2 167 -26 8 1794 425 55 0 0 chr1 158524488 158524543 -38670889 + B2_Mm2 SINE B2 47 101 -94 8 1794 26 0 0 0 chr1 158524604 158524630 -38670802 + AT_rich Low_complexity Low_complexity 1 26 0 8 1794 612 167 75 15 chr1 158524630 158524764 -38670668 - B1_Mus2 SINE Alu 0 147 6 8 1794 326 288 27 67 chr1 158524632 158524781 -38670651 - B4 SINE B4 -69 223 81 8 1794 1400 198 106 6 chr1 158524903 158525223 -38670209 - ORR1B2 LTR MaLR -15 352 1 8 1794 487 233 50 27 chr1 158525442 158525619 -38669813 - L1M3 LINE L1 -354 5802 5625 8 1794 2418 210 234 69 chr1 158525626 158526247 -38669185 - RLTR21 LTR ERVK -381 1191 462 9 1794 207 0 0 0 chr1 158526247 158526270 -38669162 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 9 1794 2418 221 70 101 chr1 158526270 158526281 -38669151 - RLTR21 LTR ERVK -1111 461 450 9 1794 189 0 0 0 chr1 158526281 158526302 -38669130 + (TGG)n Simple_repeat Simple_repeat 2 22 0 9 1794 2418 221 70 101 chr1 158526302 158526439 -38668993 - RLTR21 LTR ERVK -1123 449 312 9 1794 1509 63 5 0 chr1 158526439 158526628 -38668804 - B2_Mm1a SINE B2 -3 190 1 9 1794 2418 221 70 101 chr1 158526628 158526942 -38668490 - RLTR21 LTR ERVK -1261 311 19 9 1794 347 222 0 14 chr1 158526959 158527032 -38668400 - PB1D10 SINE Alu -45 72 1 9 1794 1638 21 0 40 chr1 158527610 158527810 -38667622 - B2_Mm1a SINE B2 0 193 2 9 1794 414 0 0 0 chr1 158527925 158527971 -38667461 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1794 316 224 49 40 chr1 158528140 158528254 -38667178 + L1M2 LINE L1 5702 5805 -486 9 1794 1796 111 193 13 chr1 158528259 158528570 -38666862 + ORR1B2 LTR MaLR 1 367 0 9 1794 1623 166 74 70 chr1 158528611 158529122 -38666310 - RMER6C LTR ERVK -2 688 1 9 1794 814 191 0 7 chr1 158529386 158529523 -38665909 - B1_Mur4 SINE Alu -13 137 2 1 1794 1943 155 51 8 chr1 158530205 158530575 -38664857 - ORR1B1 LTR MaLR -8 386 1 1 1794 310 339 98 0 chr1 158530917 158531029 -38664403 + ID_B1 SINE B4 2 124 -100 1 1794 1177 149 49 19 chr1 158531463 158531668 -38663764 - URR1A DNA MER1_type 0 226 16 1 1794 273 165 238 12 chr1 158531849 158531929 -38663503 + MTE2a LTR MaLR 1 98 -281 1 1794 238 232 0 0 chr1 158531929 158531985 -38663447 + MTE2a LTR MaLR 58 113 -266 1 1794 901 256 115 22 chr1 158531994 158532350 -38663082 - Lx9 LINE L1 0 7644 7256 1 1794 956 197 5 21 chr1 158532379 158532566 -38662866 + MTE2a LTR MaLR 196 379 0 1 1794 279 0 0 0 chr1 158532661 158532692 -38662740 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1794 378 0 0 0 chr1 158533024 158533066 -38662366 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1794 198 0 0 0 chr1 158533069 158533091 -38662341 + (CACAC)n Simple_repeat Simple_repeat 3 24 0 1 1794 375 311 10 0 chr1 158533353 158533456 -38661976 - PB1D10 SINE Alu -4 113 10 1 1794 239 394 0 29 chr1 158533371 158533473 -38661959 - ID_B1 SINE B4 -49 175 77 1 1794 529 296 60 28 chr1 158533598 158533880 -38661552 - L1ME1 LINE L1 -162 6017 5727 1 1794 420 202 0 103 chr1 158533898 158534014 -38661418 - B3A SINE B2 -3 195 92 1 1794 1089 36 66 0 chr1 158534158 158534295 -38661137 - B1_Mm SINE Alu 0 147 2 1 1794 231 36 0 0 chr1 158534633 158534661 -38660771 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1 1794 3290 201 116 50 chr1 158534709 158535846 -38659586 - RMER1A Other Other -110 920 7 1 1794 615 247 40 59 chr1 158535914 158536116 -38659316 - B3A SINE B2 0 198 1 1 1794 238 387 32 16 chr1 158536196 158536322 -38659110 + MER5A DNA MER1_type 60 187 -2 1 1794 568 299 38 38 chr1 158536701 158536910 -38658522 + MER20 DNA MER1_type 1 209 -10 1 1794 321 26 0 0 chr1 158537015 158537053 -38658379 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1794 725 133 132 8 chr1 158537053 158537182 -38658250 - B1_Mur3 SINE Alu -4 145 1 1 1794 435 38 0 0 chr1 158537429 158537482 -38657950 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1794 671 296 56 7 chr1 158537624 158537893 -38657539 - B4A SINE B4 -9 283 2 1 1794 291 277 59 0 chr1 158538324 158538425 -38657007 - L1M4 LINE L1 -2376 3770 3664 1 1794 747 221 329 40 chr1 158539217 158539642 -38655790 - RMER4B LTR ERVK -21 564 17 1 1794 206 162 27 0 chr1 158539808 158539845 -38655587 + GA-rich Low_complexity Low_complexity 5 42 0 1 1794 827 122 0 7 chr1 158540193 158540333 -38655099 + URR1A DNA MER1_type 81 219 -7 1 1794 247 309 54 2 chr1 158540333 158540443 -38654989 + L1MB8 LINE L1 5926 6039 -135 1 1794 1291 157 37 0 chr1 158540717 158540933 -38654499 - URR1B DNA MER1_type 0 225 2 1 1794 2471 31 6 6 chr1 158541257 158541582 -38653850 - IAPEY2_LTR LTR ERVK 0 357 33 1 1794 1134 88 0 0 chr1 158541602 158541750 -38653682 - B1_Mus1 SINE Alu 0 148 1 1 1794 465 84 12 35 chr1 158541803 158541889 -38653543 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 1 1794 933 110 18 49 chr1 158541889 158542052 -38653380 - B2_Mm2 SINE B2 -2 193 36 1 1794 693 157 0 50 chr1 158542092 158542233 -38653199 - ORR1C2 LTR MaLR -248 136 3 1 1794 390 254 118 66 chr1 158542351 158542525 -38652907 - L1MEf LINE L1 -4537 1663 1473 1 1794 1174 179 9 36 chr1 158542525 158542745 -38652687 - B3 SINE B2 -2 214 1 1 1794 390 254 118 66 chr1 158542745 158542781 -38652651 - L1MEf LINE L1 -4728 1472 1442 1 1794 579 66 0 0 chr1 158542902 158542978 -38652454 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 1 1794 698 236 148 49 chr1 158543259 158543430 -38652002 - B4 SINE B4 -3 289 95 1 1794 1355 87 16 5 chr1 158543430 158543616 -38651816 + B2_Mm2 SINE B2 2 189 -6 1 1794 698 236 148 49 chr1 158543616 158543707 -38651725 - B4 SINE B4 -198 94 1 1 1794 1327 104 15 20 chr1 158543715 158543911 -38651521 - B2_Mm2 SINE B2 0 195 1 1 1794 25 0 0 0 chr1 158543924 158543949 -38651483 + AT_rich Low_complexity Low_complexity 1 25 0 1 1794 336 252 219 0 chr1 158543965 158544084 -38651348 - RSINE1 SINE B4 -7 158 14 1 1794 247 181 253 7 chr1 158544710 158544860 -38650572 + Charlie1b DNA MER1_type 237 423 -100 1 1794 981 74 27 0 chr1 158544892 158545041 -38650391 - B2_Mm2 SINE B2 -2 193 41 1 1794 343 239 84 32 chr1 158545265 158545360 -38650072 - PB1D10 SINE Alu -4 113 14 1 1794 329 266 32 0 chr1 158546331 158546425 -38649007 - PB1D9 SINE Alu -12 108 12 1 1794 602 252 14 34 chr1 158546432 158546580 -38648852 - B1_Mur1 SINE Alu 0 149 5 1 1794 192 40 0 0 chr1 158546965 158546990 -38648442 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1794 200 111 28 0 chr1 158547544 158547580 -38647852 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 1 1794 304 257 18 27 chr1 158548142 158548254 -38647178 - PB1D10 SINE Alu -4 113 3 1 1794 272 351 43 51 chr1 158548448 158548682 -38646750 - L2a LINE L2 -239 3187 2956 1 1794 439 264 112 7 chr1 158548688 158548856 -38646576 + B3A SINE B2 2 186 -30 1 1794 288 212 61 0 chr1 158548849 158548915 -38646517 + B3A SINE B2 91 160 -38 1 1794 330 259 9 61 chr1 158548955 158549070 -38646362 + PB1D9 SINE Alu 7 115 -5 1 1794 217 270 80 0 chr1 158549114 158549214 -38646218 - L2a LINE L2 -509 2910 2803 1 1794 860 182 0 7 chr1 158549329 158549478 -38645954 + B1_Mus1 SINE Alu 1 148 0 1 1794 573 206 29 99 chr1 158549540 158549712 -38645720 - RSINE1 SINE B4 0 165 6 1 1794 271 318 15 30 chr1 158549725 158549858 -38645574 - L2a LINE L2 -827 2592 2462 1 1794 424 158 0 179 chr1 158550120 158550243 -38645189 - PB1D9 SINE Alu -1 119 19 1 1794 499 208 32 8 chr1 158550518 158550644 -38644788 + B4 SINE B4 1 129 -163 1 1794 267 333 106 5 chr1 158550830 158551038 -38644394 - L2 LINE L2 -460 2959 2731 1 1794 371 196 128 49 chr1 158551647 158551749 -38643683 - PB1D7 SINE Alu -7 113 4 1 1794 233 299 42 63 chr1 158551958 158552101 -38643331 + ID_B1 SINE B4 67 206 -18 1 1794 246 266 0 59 chr1 158552378 158552446 -38642986 - ID_B1 SINE B4 -3 221 158 1 1794 644 216 132 47 chr1 158553338 158553528 -38641904 + B3 SINE B2 1 206 -10 1 1794 459 0 0 0 chr1 158553966 158554017 -38641415 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1794 291 54 0 0 chr1 158554794 158554831 -38640601 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1794 239 238 114 45 chr1 158554888 158554976 -38640456 + PB1D9 SINE Alu 9 102 -18 1 1794 528 269 74 0 chr1 158555002 158555151 -38640281 + B3A SINE B2 2 161 -37 1 1794 1154 48 0 14 chr1 158555886 158556033 -38639399 + B1_Mus2 SINE Alu 1 145 -2 1 1794 888 216 37 0 chr1 158556332 158556494 -38638938 + B3 SINE B2 47 214 -2 1 1794 263 257 47 56 chr1 158556616 158556723 -38638709 + MIRb SINE MIR 3 108 -160 1 1794 537 55 0 0 chr1 158556731 158556804 -38638628 + (TGG)n Simple_repeat Simple_repeat 2 74 0 1 1794 278 325 115 41 chr1 158556811 158556933 -38638499 - B1F2 SINE Alu -13 136 6 1 1794 280 300 42 76 chr1 158556957 158557076 -38638356 - B3 SINE B2 0 216 102 1 1794 593 144 21 0 chr1 158557113 158557210 -38638222 + PB1D9 SINE Alu 2 100 -20 1 1794 252 0 0 0 chr1 158557515 158557543 -38637889 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1794 1194 75 0 0 chr1 158557624 158557770 -38637662 + B1_Mus2 SINE Alu 2 147 0 1 1794 288 343 42 28 chr1 158558280 158558424 -38637008 + MER58A DNA MER1_type 78 223 -1 1 1794 350 265 198 12 chr1 158558455 158558627 -38636805 + L1MB7 LINE L1 5963 6166 -18 1 1794 234 333 51 20 chr1 158558883 158558981 -38636451 + PB1D10 SINE Alu 1 101 -16 1 1794 34 55 0 0 chr1 158559156 158559211 -38636221 + AT_rich Low_complexity Low_complexity 1 55 0 1 1794 260 253 54 11 chr1 158559353 158559445 -38635987 - PB1D7 SINE Alu -6 114 19 1 1794 460 195 24 96 chr1 158559631 158559756 -38635676 + PB1D10 SINE Alu 5 120 0 1 1794 487 237 0 33 chr1 158559761 158559883 -38635549 + PB1D9 SINE Alu 2 119 -1 1 1794 440 218 19 19 chr1 158560663 158560766 -38634666 - PB1D10 SINE Alu -14 103 1 1 1794 601 172 210 31 chr1 158561223 158561385 -38634047 - B3 SINE B2 -13 203 13 1 1794 306 50 0 0 chr1 158561749 158561789 -38633643 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1794 202 178 0 88 chr1 158561848 158561892 -38633540 + T-rich Low_complexity Low_complexity 25 62 0 1 1794 747 221 158 21 chr1 158561892 158562082 -38633350 - B3 SINE B2 0 216 1 1 1794 202 178 0 88 chr1 158562082 158562105 -38633327 + T-rich Low_complexity Low_complexity 2 24 0 1 1794 955 206 37 32 chr1 158562105 158562295 -38633137 - B3 SINE B2 0 216 26 1 1794 707 153 98 8 chr1 158562503 158562635 -38632797 - B1_Mus1 SINE Alu -3 145 2 1 1794 1366 76 22 0 chr1 158562849 158563033 -38632399 + B2_Mm2 SINE B2 1 188 -7 1 1794 27 29 0 0 chr1 158563580 158563614 -38631818 + AT_rich Low_complexity Low_complexity 1 34 0 1 1794 183 80 0 0 chr1 158564126 158564151 -38631281 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1794 216 333 176 0 chr1 158564151 158564259 -38631173 - B1F1 SINE Alu 0 149 23 1 1794 243 305 133 0 chr1 158564714 158564819 -38630613 + PB1 SINE Alu 5 123 -4 1 1794 345 256 85 8 chr1 158564833 158564951 -38630481 + ID_B1 SINE B4 87 213 -11 1 1794 428 322 42 93 chr1 158565708 158565944 -38629488 + B4A SINE B4 54 277 -15 1 1794 434 297 85 0 chr1 158566175 158566293 -38629139 - RSINE1 SINE B4 -37 128 1 1 1794 1272 63 0 0 chr1 158566303 158566478 -38628954 + (TCTCCC)n Simple_repeat Simple_repeat 2 176 0 1 1794 276 53 0 0 chr1 158566484 158566522 -38628910 + (CACTC)n Simple_repeat Simple_repeat 3 40 0 2 1794 895 116 43 0 chr1 158566522 158566660 -38628772 - B1_Mus1 SINE Alu 0 148 5 2 1794 1249 41 0 0 chr1 158567303 158567449 -38627983 - B1_Mm SINE Alu 0 147 2 2 1794 293 222 50 74 chr1 158567477 158567576 -38627856 + B3A SINE B2 24 118 -80 2 1794 1152 182 84 0 chr1 158567576 158567779 -38627653 + URR1A DNA MER1_type 1 220 -6 2 1794 25 65 0 0 chr1 158567857 158567903 -38627529 + AT_rich Low_complexity Low_complexity 1 46 0 2 1794 222 279 89 0 chr1 158568261 158568340 -38627092 + PB1D10 SINE Alu 1 86 -31 2 1794 311 0 26 0 chr1 158568514 158568553 -38626879 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1794 188 160 60 0 chr1 158568761 158568811 -38626621 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 2 1794 345 281 0 12 chr1 158569032 158569115 -38626317 - ID4_ SINE ID 0 83 2 2 1794 359 21 21 0 chr1 158569162 158569210 -38626222 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1794 1098 49 27 20 chr1 158569269 158569415 -38626017 + B1_Mm SINE Alu 1 147 0 2 1794 27 0 0 0 chr1 158569415 158569442 -38625990 + AT_rich Low_complexity Low_complexity 1 27 0 2 1794 249 292 94 7 chr1 158569513 158569651 -38625781 + L1M5 LINE L1 5330 5479 -685 2 1794 1001 299 65 7 chr1 158570021 158570297 -38625135 + B4A SINE B4 1 292 0 2 1794 355 255 75 0 chr1 158570351 158570445 -38624987 - PB1 SINE Alu -4 123 23 2 1794 227 286 0 0 chr1 158571530 158571586 -38623846 - RMER15 LTR ERVL -360 215 160 2 1794 238 195 0 0 chr1 158576202 158576243 -38619189 - MIR SINE MIR -129 79 39 2 1794 924 46 0 91 chr1 158578020 158578163 -38617269 + B1_Mus1 SINE Alu 14 143 -5 2 1794 281 212 77 154 chr1 158578034 158578190 -38617242 + B4A SINE B4 111 254 -38 2 1794 700 133 12 37 chr1 158580149 158580391 -38615041 + CT-rich Low_complexity Low_complexity 1 235 0 2 1794 594 269 127 12 chr1 158580397 158580570 -38614862 - ID_B1 SINE B4 -31 193 1 2 1794 684 289 179 31 chr1 158580590 158581157 -38614275 - L1MA6 LINE L1 -27 6270 5628 2 1794 269 223 77 10 chr1 158581264 158581368 -38614064 - L1MA6 LINE L1 -17 6283 6173 2 1794 23 0 0 29 chr1 158581400 158581414 -38614018 + AT_rich Low_complexity Low_complexity 1 14 0 2 1794 1406 64 21 11 chr1 158581414 158581603 -38613829 - B2_Mm1a SINE B2 -1 192 2 2 1794 23 0 0 29 chr1 158581603 158581622 -38613810 + AT_rich Low_complexity Low_complexity 1 19 0 2 1794 385 248 16 117 chr1 158581629 158581757 -38613675 - B1F2 SINE Alu -1 116 2 2 1794 776 79 0 0 chr1 158581824 158581925 -38613507 - B2_Mm2 SINE B2 -94 101 1 2 1794 519 258 99 12 chr1 158581940 158582101 -38613331 - B3A SINE B2 0 198 24 2 1794 314 237 125 31 chr1 158582381 158582477 -38612955 - B1F1 SINE Alu -44 105 1 2 1794 307 314 83 28 chr1 158582477 158582489 -38612943 - ID_B1 SINE B4 -41 183 70 2 1794 324 284 10 10 chr1 158582495 158582598 -38612834 - L1MA6 LINE L1 -712 5588 5486 2 1794 272 307 98 45 chr1 158582819 158582952 -38612480 + RMER15 LTR ERVL 426 565 -10 2 1794 432 157 43 43 chr1 158583029 158583122 -38612310 - B3 SINE B2 -12 204 112 2 1794 293 146 53 35 chr1 158583133 158583190 -38612242 - L1M2 LINE L1 -2479 3664 3607 2 1794 254 356 43 7 chr1 158583192 158583320 -38612112 - PB1D10 SINE Alu -8 141 5 2 1794 243 297 13 13 chr1 158583253 158583328 -38612104 - ID_B1 SINE B4 -71 153 79 2 1794 446 155 60 0 chr1 158583343 158583427 -38612005 - B1_Mur4 SINE Alu -15 135 47 2 1794 258 216 166 40 chr1 158583450 158583667 -38611765 - L1M2 LINE L1 -2580 3563 3263 2 1794 593 245 163 11 chr1 158583804 158583994 -38611438 + ID_B1 SINE B4 1 219 -5 2 1794 301 281 33 26 chr1 158583996 158584095 -38611337 - PB1D7 SINE Alu -12 108 9 2 1794 455 156 28 50 chr1 158587410 158587524 -38607908 - B1_Mm SINE Alu -33 115 9 2 1794 181 326 0 0 chr1 158588369 158588415 -38607017 + MIR3 SINE MIR 120 165 -43 2 1794 389 249 292 0 chr1 158589197 158589374 -38606058 + B4A SINE B4 1 229 -63 2 1794 626 245 42 7 chr1 158589377 158589521 -38605911 + B1_Mur1 SINE Alu 1 149 0 2 1794 1236 41 0 13 chr1 158589524 158589673 -38605759 + B1_Mm SINE Alu 1 147 0 2 1794 198 0 0 0 chr1 158589673 158589695 -38605737 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1794 203 0 37 0 chr1 158589760 158589787 -38605645 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1794 1817 106 30 55 chr1 158590740 158591070 -38604362 + RLTRETN_Mm LTR ERVK 1 322 0 2 1794 392 294 87 54 chr1 158592003 158592031 -38603401 + L1MDa LINE L1 1150 1181 -5452 2 1794 1418 60 22 11 chr1 158592031 158592215 -38603217 + B2_Mm2 SINE B2 2 187 -8 2 1794 392 294 87 54 chr1 158592215 158592427 -38603005 + L1MDa LINE L1 1182 1398 -5235 2 1794 794 137 21 41 chr1 158592432 158592577 -38602855 + B1_Mur4 SINE Alu 9 150 0 2 1794 746 234 54 205 chr1 158592649 158592777 -38602655 + L1_Mur3 LINE L1 3343 3471 -2409 2 1794 1200 48 7 0 chr1 158592777 158592922 -38602510 + B1_Mm SINE Alu 2 147 0 2 1794 746 234 54 205 chr1 158592922 158593384 -38602048 + L1_Mur3 LINE L1 3472 3844 -2036 2 1794 786 266 121 18 chr1 158593467 158593747 -38601685 + RMER20B LTR ERVK 95 403 -224 2 1794 1230 34 0 26 chr1 158593815 158593966 -38601466 + B1_Mus1 SINE Alu 2 148 0 2 1794 210 118 0 0 chr1 158593969 158594003 -38601429 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1794 488 136 22 11 chr1 158594012 158594101 -38601331 + L1_Mur3 LINE L1 3878 3967 -1913 2 1794 1326 264 86 55 chr1 158594107 158594605 -38600827 + RLTR20B3 LTR ERVK 21 547 -31 2 1794 22 0 0 0 chr1 158594605 158594627 -38600805 + AT_rich Low_complexity Low_complexity 1 22 0 2 1794 4122 234 117 15 chr1 158594631 158595934 -38599498 + Lx8 LINE L1 3963 5399 -481 2 1794 896 277 105 19 chr1 158595940 158596401 -38599031 + Lx8 LINE L1 5589 6081 -1392 2 1794 499 112 0 48 chr1 158596440 158596524 -38598908 + B1_Mus2 SINE Alu 1 80 -67 2 1795 453 133 0 0 chr1 158597511 158597586 -38597846 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1795 275 292 0 0 chr1 158598024 158598096 -38597336 + ID4_ SINE ID 3 74 -9 2 1795 465 210 77 89 chr1 158598120 158598282 -38597150 + B1_Mur4 SINE Alu 15 149 -1 2 1795 657 88 296 17 chr1 158598287 158598402 -38597030 + B1_Mus2 SINE Alu 1 147 0 2 1795 486 208 31 0 chr1 158598754 158598850 -38596582 - PB1D10 SINE Alu -13 104 6 2 1795 423 241 12 78 chr1 158599070 158599244 -38596188 + RLTR9A LTR ERVK 219 382 -1 2 1795 315 243 40 0 chr1 158600283 158600357 -38595075 - RLTR21 LTR ERVK -155 1417 1341 2 1795 4404 153 99 14 chr1 158600348 158600456 -38594976 - RMER12 LTR ERVK -417 905 769 2 1795 225 0 0 0 chr1 158600456 158600481 -38594951 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 2 1795 4404 155 99 16 chr1 158600481 158601202 -38594230 - RMER12 LTR ERVK -554 768 19 2 1795 304 240 152 30 chr1 158601262 158601361 -38594071 - PB1D10 SINE Alu -6 111 1 2 1795 514 304 86 83 chr1 158601396 158601462 -38593970 - B4 SINE B4 0 292 214 2 1795 180 0 0 0 chr1 158601462 158601482 -38593950 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1795 514 304 86 83 chr1 158601482 158601607 -38593825 - B4 SINE B4 -79 213 86 2 1795 1215 61 0 0 chr1 158601607 158601755 -38593677 - B1_Mus1 SINE Alu 0 148 1 2 1795 514 304 86 83 chr1 158601755 158601852 -38593580 - B4 SINE B4 -207 85 4 2 1795 732 262 37 46 chr1 158601873 158602089 -38593343 - B3A SINE B2 -1 215 2 2 1795 1375 92 38 0 chr1 158602311 158602496 -38592936 + B2_Mm2 SINE B2 3 194 -1 2 1795 1044 82 0 0 chr1 158602655 158602790 -38592642 + B1_Mus1 SINE Alu 1 135 -13 2 1795 324 0 0 0 chr1 158602791 158602827 -38592605 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 1795 1154 210 119 58 chr1 158602902 158603281 -38592151 + RMER17C LTR ERVK 1 402 -8 2 1795 307 231 8 163 chr1 158605124 158605137 -38590295 + ID_B1 SINE B4 115 177 -47 2 1795 595 181 0 37 chr1 158605137 158605246 -38590186 + B1_Mur1 SINE Alu 42 146 -3 2 1795 222 80 0 57 chr1 158605548 158605601 -38589831 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 2 1795 513 124 38 0 chr1 158605668 158605756 -38589676 - B1_Mus2 SINE Alu 0 149 59 2 1795 416 232 44 16 chr1 158605760 158605898 -38589534 - L1M2 LINE L1 -1173 4970 4794 2 1795 1386 73 17 0 chr1 158605926 158606104 -38589328 + B2_Mm2 SINE B2 1 181 -14 2 1795 231 130 0 53 chr1 158606104 158606161 -38589271 + T-rich Low_complexity Low_complexity 4 57 0 2 1795 1292 34 0 0 chr1 158606161 158606307 -38589125 - B1_Mm SINE Alu 0 147 2 2 1795 550 77 20 81 chr1 158606614 158606713 -38588719 + B1_Mur3 SINE Alu 55 147 -2 2 1795 290 267 67 0 chr1 158606720 158606780 -38588652 + ORR1C2 LTR MaLR 140 203 -167 2 1795 323 277 43 0 chr1 158606765 158606859 -38588573 + ORR1C2-int LTR MaLR 796 893 -616 2 1795 1575 197 151 49 chr1 158606855 158607064 -38588368 + ORR1C2-int LTR MaLR 830 1075 -295 2 1795 1459 63 11 5 chr1 158607064 158607255 -38588177 - B2_Mm1a SINE B2 -1 192 1 2 1795 1575 197 151 49 chr1 158607255 158607536 -38587896 + ORR1C2-int LTR MaLR 1076 1369 -1 2 1795 1201 212 165 27 chr1 158607536 158607693 -38587739 + ORR1C2 LTR MaLR 1 184 -200 2 1795 222 62 0 0 chr1 158607693 158607725 -38587707 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 2 1795 1201 212 165 27 chr1 158607725 158607901 -38587531 + ORR1C2 LTR MaLR 185 380 -4 2 1795 561 212 109 7 chr1 158607945 158608083 -38587349 + ORR1D2 LTR MaLR 219 370 0 2 1795 26 30 0 0 chr1 158608668 158608701 -38586731 + AT_rich Low_complexity Low_complexity 1 33 0 2 1795 754 142 19 19 chr1 158610087 158610226 -38585206 - B1_Mur4 SINE Alu 0 149 1 2 1795 517 203 186 47 chr1 158610590 158610719 -38584713 + B1F SINE Alu 1 147 -2 2 1795 250 301 121 8 chr1 158611992 158612116 -38583316 + L1M5 LINE L1 5740 5877 -247 2 1795 667 137 171 0 chr1 158612345 158612462 -38582970 + B1_Mur3 SINE Alu 5 141 -8 2 1795 657 0 0 0 chr1 158612502 158612575 -38582857 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 2 1795 337 250 26 0 chr1 158612635 158612711 -38582721 + B3A SINE B2 1 78 -120 2 1795 429 81 0 0 chr1 158612765 158612827 -38582605 + (CAGG)n Simple_repeat Simple_repeat 1 62 0 2 1795 21 0 0 0 chr1 158612846 158612867 -38582565 + AT_rich Low_complexity Low_complexity 1 21 0 3 1795 25 0 0 0 chr1 158612954 158612979 -38582453 + AT_rich Low_complexity Low_complexity 1 25 0 3 1795 1568 32 21 0 chr1 158612979 158613167 -38582265 - B2_Mm1a SINE B2 0 193 2 3 1795 751 86 9 0 chr1 158613186 158613291 -38582141 - B2_Mm2 SINE B2 -88 107 2 3 1795 250 382 36 0 chr1 158613348 158613458 -38581974 + MLT1A1 LTR MaLR 1 114 -294 3 1795 274 312 103 10 chr1 158613485 158613582 -38581850 + MLT1A1 LTR MaLR 247 352 -56 3 1795 453 292 55 55 chr1 158613592 158613737 -38581695 + RSINE1 SINE B4 12 156 -9 3 1795 1198 54 0 0 chr1 158613991 158614138 -38581294 - B1_Mus2 SINE Alu 0 147 1 3 1795 231 286 32 32 chr1 158614290 158614384 -38581048 + LTR41B LTR ERVL 1 94 -664 3 1795 269 299 35 0 chr1 158614539 158614626 -38580806 - PB1D10 SINE Alu -5 112 23 3 1795 236 339 104 0 chr1 158614857 158614972 -38580460 + B4 SINE B4 80 206 -86 3 1795 380 297 6 6 chr1 158614877 158614989 -38580443 + PB1D10 SINE Alu 15 127 -21 3 1795 285 256 25 25 chr1 158614989 158615069 -38580363 + GA-rich Low_complexity Low_complexity 1 80 0 3 1795 961 268 23 14 chr1 158615093 158615309 -38580123 + B4 SINE B4 2 219 -73 3 1795 324 0 0 0 chr1 158615339 158615375 -38580057 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1795 241 260 20 0 chr1 158615396 158615446 -38579986 + ID2 SINE ID 1 51 -32 3 1795 180 0 0 0 chr1 158615481 158615501 -38579931 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1795 252 0 0 0 chr1 158615888 158615916 -38579516 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1795 662 187 0 27 chr1 158615922 158616032 -38579400 - B1_Mur2 SINE Alu -20 129 23 3 1795 329 316 35 56 chr1 158616032 158616066 -38579366 - ID_B1 SINE B4 -20 204 64 3 1795 366 303 125 112 chr1 158617100 158617405 -38578027 + ORR1E LTR MaLR 23 331 -28 3 1795 276 287 123 82 chr1 158617767 158618010 -38577422 + ORR1E LTR MaLR 96 348 -11 3 1795 1524 320 193 71 chr1 158618057 158619042 -38576390 + MTE-int LTR MaLR 49 1237 -343 3 1795 723 155 266 29 chr1 158619042 158619215 -38576217 - B3 SINE B2 0 216 3 3 1795 1524 320 193 71 chr1 158619215 158619272 -38576160 + MTE-int LTR MaLR 1238 1267 -313 3 1795 336 257 33 46 chr1 158619272 158619423 -38576009 - RSINE1 SINE B4 -13 152 4 3 1795 1524 320 193 71 chr1 158619423 158619536 -38575896 + MTE-int LTR MaLR 1268 1350 -230 3 1795 186 71 0 0 chr1 158619536 158619564 -38575868 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1795 1524 320 193 71 chr1 158619564 158619735 -38575697 + MTE-int LTR MaLR 1351 1539 -41 3 1795 719 237 27 33 chr1 158619802 158619985 -38575447 - B3A SINE B2 -16 182 1 3 1795 914 174 0 0 chr1 158620282 158620426 -38575006 - B1_Mus1 SINE Alu 0 148 5 3 1795 365 339 155 9 chr1 158621190 158621422 -38574010 + L1MC4 LINE L1 6458 6723 -1159 3 1795 280 233 13 18 chr1 158621528 158621591 -38573841 - PB1D10 SINE Alu -52 96 29 3 1795 234 260 141 65 chr1 158621629 158621814 -38573618 + L1MC4 LINE L1 6784 6982 -1060 3 1795 741 182 6 43 chr1 158621824 158621985 -38573447 + ID_B1 SINE B4 70 224 0 3 1795 1138 42 0 14 chr1 158621843 158621987 -38573445 + B1_Mus2 SINE Alu 6 147 0 3 1795 426 270 183 12 chr1 158622005 158622245 -38573187 + L1MC4 LINE L1 6992 7272 -770 3 1795 877 173 24 36 chr1 158622472 158622640 -38572792 - B2_Mm2 SINE B2 -27 168 3 3 1795 653 182 42 49 chr1 158622640 158622781 -38572651 + B1_Mur1 SINE Alu 10 149 0 3 1795 204 111 0 0 chr1 158622785 158622821 -38572611 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1795 25 0 0 0 chr1 158622939 158622964 -38572468 + AT_rich Low_complexity Low_complexity 1 25 0 3 1795 309 248 0 124 chr1 158623016 158623145 -38572287 + MT2A LTR ERVL 153 265 -336 3 1795 748 175 28 7 chr1 158623032 158623176 -38572256 + B1_Mus1 SINE Alu 2 148 0 3 1795 385 261 162 44 chr1 158623312 158623448 -38571984 + B4 SINE B4 128 279 -13 3 1795 340 321 108 18 chr1 158623606 158623828 -38571604 + L1MC LINE L1 5564 5805 -2077 3 1795 1350 63 0 91 chr1 158623968 158624019 -38571413 - B2_Mm2 SINE B2 -3 192 159 3 1795 573 88 0 0 chr1 158624019 158624099 -38571333 + (TTTA)n Simple_repeat Simple_repeat 3 82 0 3 1795 1350 63 0 91 chr1 158624099 158624257 -38571175 - B2_Mm2 SINE B2 -37 158 2 3 1795 1251 48 0 0 chr1 158624269 158624415 -38571017 - B1_Mus2 SINE Alu 0 147 2 3 1795 1616 228 57 112 chr1 158624440 158624566 -38570866 + MT2A LTR ERVL 1 84 -449 3 1795 1229 47 0 0 chr1 158624566 158624714 -38570718 - B1_Mus1 SINE Alu 0 148 1 3 1795 1616 228 57 112 chr1 158624714 158625151 -38570281 + MT2A LTR ERVL 85 533 0 3 1795 1481 49 32 0 chr1 158625253 158625438 -38569994 + B2_Mm1t SINE B2 2 192 -1 3 1795 1146 55 0 52 chr1 158625439 158625593 -38569839 + B1_Mus2 SINE Alu 1 146 -1 3 1795 188 100 25 0 chr1 158625600 158625640 -38569792 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 1795 253 242 0 31 chr1 158626069 158626133 -38569299 - tRNA-Ala-GCY_ tRNA tRNA 0 75 14 3 1795 425 191 96 0 chr1 158626138 158626232 -38569200 + MT2A LTR ERVL 218 320 -213 3 1795 1166 250 120 49 chr1 158626611 158627002 -38568430 + RMER4B LTR ERVK 17 435 -150 3 1795 193 325 22 65 chr1 158627130 158627222 -38568210 + L2 LINE L2 2498 2585 -834 3 1795 439 217 116 18 chr1 158627659 158627823 -38567609 + Charlie4a DNA MER1_type 46 225 -283 3 1795 743 320 95 12 chr1 158628215 158628468 -38566964 - B4A SINE B4 -18 274 1 3 1795 376 183 170 11 chr1 158629207 158629301 -38566131 - B1_Mur1 SINE Alu -35 114 6 3 1795 683 145 31 31 chr1 158629531 158629544 -38565888 - B1_Mur3 SINE Alu -1 148 137 3 1795 1195 48 0 7 chr1 158629544 158629691 -38565741 - B1_Mus2 SINE Alu -1 146 1 3 1795 1424 86 16 0 chr1 158629691 158629876 -38565556 - B2_Mm2 SINE B2 -6 189 1 3 1795 683 145 31 31 chr1 158629876 158629989 -38565443 - B1_Mur3 SINE Alu -13 136 22 3 1795 494 266 17 34 chr1 158630005 158630122 -38565310 - PB1D7 SINE Alu -5 115 1 3 1795 226 306 74 107 chr1 158630018 158630139 -38565293 - MT2B LTR ERVL -346 255 139 3 1795 345 244 36 12 chr1 158630879 158630962 -38564470 - PB1D7 SINE Alu -30 90 6 3 1795 678 207 202 22 chr1 158631049 158631227 -38564205 - B3 SINE B2 -6 210 1 3 1795 251 336 93 8 chr1 158631525 158631654 -38563778 - B1F SINE Alu -9 140 1 3 1795 911 205 92 0 chr1 158632066 158632251 -38563181 + B3 SINE B2 1 202 -14 3 1795 225 0 0 0 chr1 158632264 158632289 -38563143 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1795 207 184 188 106 chr1 158632895 158632980 -38562452 + L2c LINE L2 3278 3369 -18 3 1795 238 308 103 28 chr1 158633163 158633270 -38562162 + MIR3 SINE MIR 90 204 -4 3 1795 718 312 78 0 chr1 158634092 158634284 -38561148 - B4 SINE B4 -2 290 84 3 1795 457 219 65 40 chr1 158634307 158634426 -38561006 - B4A SINE B4 0 292 171 3 1795 1782 161 109 0 chr1 158634426 158634756 -38560676 + ORR1C2 LTR MaLR 1 366 -18 3 1795 508 191 22 33 chr1 158634885 158634977 -38560455 - B1_Mus2 SINE Alu -56 93 3 3 1795 297 185 76 15 chr1 158635366 158635432 -38560000 + PB1D7 SINE Alu 47 116 -4 3 1795 264 333 46 37 chr1 158635486 158635595 -38559837 - B1F SINE Alu -39 110 1 3 1795 229 325 11 11 chr1 158635640 158635727 -38559705 - MIR3 SINE MIR -3 205 119 3 1795 1168 75 0 7 chr1 158636623 158636771 -38558661 - B1_Mus1 SINE Alu -1 147 1 3 1795 227 294 96 19 chr1 158637309 158637413 -38558019 - PB1D10 SINE Alu -5 112 1 3 1795 198 0 0 0 chr1 158637423 158637445 -38557987 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 3 1795 1611 22 0 0 chr1 158637449 158637627 -38557805 - B2_Mm1a SINE B2 -15 178 1 3 1795 231 353 0 0 chr1 158638534 158638602 -38556830 - B1F SINE Alu -67 82 15 3 1795 366 247 0 0 chr1 158638616 158638693 -38556739 - ID4 SINE ID -4 79 3 3 1795 488 172 129 0 chr1 158639354 158639447 -38555985 + URR1B DNA MER1_type 1 105 -120 3 1795 1097 53 0 0 chr1 158639450 158639583 -38555849 - B1_Mus1 SINE Alu -15 133 1 3 1795 981 68 20 20 chr1 158639601 158639750 -38555682 - L1_Mus2 LINE L1 0 6566 6418 3 1795 1461 97 60 1 chr1 158639751 158640008 -38555424 - L1_Mus2 LINE L1 -284 6300 5987 3 1795 901 122 0 0 chr1 158640008 158640139 -38555293 + URR1B DNA MER1_type 94 224 -1 3 1795 202 211 0 0 chr1 158640430 158640482 -38554950 + A-rich Low_complexity Low_complexity 1 52 0 3 1795 327 180 0 32 chr1 158641885 158641948 -38553484 - RSINE1 SINE B4 -79 86 26 3 1795 283 307 208 0 chr1 158642027 158642128 -38553304 + MLT1H LTR MaLR 77 198 -351 3 1795 1433 70 27 0 chr1 158642616 158642803 -38552629 + B2_Mm1a SINE B2 2 193 0 3 1795 1166 36 0 0 chr1 158642847 158642984 -38552448 + B1_Mus2 SINE Alu 1 137 -10 3 1795 272 41 0 109 chr1 158642998 158643053 -38552379 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1795 324 250 12 36 chr1 158643735 158643818 -38551614 - PB1 SINE Alu -5 122 42 3 1795 196 199 39 31 chr1 158644047 158644112 -38551320 + L2c LINE L2 3236 3328 -59 3 1795 207 0 0 0 chr1 158644112 158644135 -38551297 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1795 602 274 42 58 chr1 158644621 158644665 -38550767 - B4A SINE B4 0 292 259 3 1795 185 108 27 0 chr1 158644665 158644702 -38550730 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1795 602 274 42 58 chr1 158644702 158644847 -38550585 - B4A SINE B4 -34 258 106 3 1795 1206 68 12 0 chr1 158644864 158645025 -38550407 + B2_Mm1t SINE B2 28 190 -3 3 1795 430 242 10 29 chr1 158645025 158645127 -38550305 - B4A SINE B4 -191 101 2 3 1795 279 54 0 0 chr1 158645158 158645195 -38550237 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 1795 258 311 14 0 chr1 158645216 158645290 -38550142 + Tigger15a DNA TcMar 62 136 -579 3 1795 1108 72 0 0 chr1 158646580 158646719 -38548713 + B1_Mus1 SINE Alu 1 139 -9 3 1795 669 144 108 50 chr1 158647394 158647533 -38547899 - B1_Mus1 SINE Alu 0 148 2 3 1795 418 176 75 21 chr1 158647637 158647730 -38547702 - PB1D9 SINE Alu -1 119 22 3 1795 23 33 0 0 chr1 158647875 158647905 -38547527 + AT_rich Low_complexity Low_complexity 1 30 0 3 1795 23 0 0 0 chr1 158648898 158648921 -38546511 + GC_rich Low_complexity Low_complexity 1 23 0 4 1795 195 42 0 0 chr1 158648923 158648947 -38546485 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 4 1795 235 272 17 34 chr1 158649045 158649220 -38546212 + (CCG)n Simple_repeat Simple_repeat 2 173 0 4 1795 207 273 100 48 chr1 158649626 158649772 -38545660 + L2a LINE L2 3214 3327 -99 4 1795 219 69 0 0 chr1 158650007 158650036 -38545396 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1795 332 318 45 8 chr1 158650036 158650169 -38545263 + MIR SINE MIR 65 202 -60 4 1795 378 0 0 0 chr1 158652200 158652242 -38543190 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1795 396 281 27 7 chr1 158652554 158652701 -38542731 - L1MB7 LINE L1 0 6184 6035 4 1795 2958 54 52 0 chr1 158653131 158653500 -38541932 - RLTR10 LTR ERVK -2 388 1 4 1795 756 154 52 37 chr1 158653526 158653661 -38541771 - B1_Mur1 SINE Alu -8 141 5 4 1795 519 283 127 69 chr1 158654090 158654443 -38540989 - RLTR26 LTR ERVK -223 404 1 4 1795 184 296 104 75 chr1 158654640 158654746 -38540686 - MER5B DNA MER1_type -69 109 1 4 1795 189 121 0 0 chr1 158655204 158655237 -38540195 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1795 393 117 0 0 chr1 158655426 158655486 -38539946 + (TAGG)n Simple_repeat Simple_repeat 4 63 0 4 1795 4562 10 0 0 chr1 158655486 158655979 -38539453 + MT2_Mm LTR ERVL 1 493 0 4 1795 322 278 204 29 chr1 158656403 158656530 -38538902 + RSINE1 SINE B4 3 154 -11 4 1795 234 0 0 0 chr1 158656530 158656556 -38538876 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1795 488 305 149 96 chr1 158656666 158657029 -38538403 + MLT2B1 LTR ERVL 6 387 -133 4 1795 376 355 60 114 chr1 158657041 158657114 -38538318 + MLT1A0 LTR MaLR 54 132 -233 4 1795 3140 25 3 0 chr1 158657114 158657467 -38537965 + IAPEY2_LTR LTR ERVK 1 354 -3 4 1795 376 355 60 114 chr1 158657467 158657692 -38537740 + MLT1A0 LTR MaLR 133 336 -29 4 1795 234 280 121 8 chr1 158657955 158658074 -38537358 + L2c LINE L2 3009 3147 -228 4 1795 801 207 75 0 chr1 158658126 158658339 -38537093 - L1M4 LINE L1 -3091 3055 2827 4 1795 827 169 7 0 chr1 158658547 158658683 -38536749 + B1_Mur4 SINE Alu 6 142 -8 4 1795 22 0 0 0 chr1 158658951 158658973 -38536459 + GC_rich Low_complexity Low_complexity 1 22 0 4 1795 1066 124 119 45 chr1 158659282 158659484 -38535948 - URR1A DNA MER1_type -9 217 1 4 1795 506 287 104 98 chr1 158659569 158659696 -38535736 - L1ME3A LINE L1 -305 5868 5767 4 1795 1206 50 0 0 chr1 158659696 158659837 -38535595 - B1_Mus2 SINE Alu -3 144 4 4 1795 506 287 104 98 chr1 158659837 158660045 -38535387 - L1ME3A LINE L1 -407 5766 5531 4 1795 297 301 0 0 chr1 158660700 158660773 -38534659 + LTR41 LTR ERVL 15 87 -681 4 1795 360 306 146 58 chr1 158660774 158661083 -38534349 - MER2 DNA MER2_type -1 344 9 4 1795 598 319 348 20 chr1 158661083 158661433 -38533999 + LTR41 LTR ERVL 94 557 -211 4 1795 1232 40 0 0 chr1 158661546 158661694 -38533738 - B1_Mus1 SINE Alu 0 148 1 4 1795 222 37 0 0 chr1 158661705 158661732 -38533700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1795 1440 72 6 0 chr1 158661732 158661913 -38533519 - B2_Mm1a SINE B2 -11 182 1 4 1795 332 0 0 44 chr1 158662030 158662075 -38533357 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1795 230 244 179 0 chr1 158662077 158662155 -38533277 - B1_Mur2 SINE Alu -49 100 9 4 1795 311 281 8 81 chr1 158662320 158662444 -38532988 - PB1D10 SINE Alu 0 117 3 4 1795 284 208 140 60 chr1 158662515 158662600 -38532832 + PB1D10 SINE Alu 1 94 -26 4 1795 249 127 308 31 chr1 158662720 158662785 -38532647 - ID4 SINE ID 0 83 1 4 1795 275 262 86 86 chr1 158662832 158662861 -38532571 - PB1D7 SINE Alu -3 117 84 4 1795 297 0 0 0 chr1 158662861 158662894 -38532538 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1795 275 262 86 86 chr1 158662894 158662981 -38532451 - PB1D7 SINE Alu -37 83 1 4 1795 333 236 0 0 chr1 158663393 158663499 -38531933 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1795 549 237 69 50 chr1 158663502 158663662 -38531770 - RSINE1 SINE B4 0 165 3 4 1795 186 43 0 0 chr1 158664138 158664161 -38531271 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1795 785 198 224 0 chr1 158664875 158665107 -38530325 - B4A SINE B4 -8 284 1 4 1795 3370 21 39 0 chr1 158665238 158665619 -38529813 - MTA_Mm LTR MaLR 0 396 1 4 1795 330 26 0 0 chr1 158666335 158666374 -38529058 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1795 257 287 18 209 chr1 158666378 158666419 -38529013 + ID SINE ID 2 30 -194 4 1795 1108 70 0 7 chr1 158666419 158666556 -38528876 + B1_Mus2 SINE Alu 2 138 -9 4 1795 309 26 0 0 chr1 158666556 158666594 -38528838 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 4 1795 257 287 18 209 chr1 158666601 158666633 -38528799 + ID SINE ID 31 60 -164 4 1795 1277 68 0 104 chr1 158666633 158666845 -38528587 - B2_Mm2 SINE B2 -3 192 3 4 1795 257 287 18 209 chr1 158666845 158666933 -38528499 + ID_B1 SINE B4 61 133 -91 4 1795 1273 275 95 22 chr1 158667512 158667966 -38527466 + RMER5 LTR ERV1 30 516 -18 4 1795 1264 75 0 0 chr1 158668002 158668162 -38527270 - B2_Mm2 SINE B2 -35 160 1 4 1795 3298 166 89 67 chr1 158668398 158669203 -38526229 - RMER1B Other Other -2 1064 242 4 1795 1230 42 7 0 chr1 158669326 158669470 -38525962 + B1_Mus2 SINE Alu 1 145 -2 4 1795 216 0 0 0 chr1 158669470 158669494 -38525938 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1795 273 273 57 0 chr1 158669673 158669761 -38525671 + MER5A1 DNA MER1_type 2 94 -72 4 1795 939 146 32 17 chr1 158670105 158670282 -38525150 + B2_Mm1t SINE B2 5 187 -11 4 1795 386 62 474 0 chr1 158670295 158670392 -38525040 + B2_Mm2 SINE B2 47 189 -6 4 1795 592 215 68 20 chr1 158670411 158670558 -38524874 + B3A SINE B2 7 160 -38 4 1795 486 0 0 0 chr1 158670885 158670939 -38524493 + (CAA)n Simple_repeat Simple_repeat 2 55 0 4 1795 237 268 73 104 chr1 158671020 158671116 -38524316 + PB1D10 SINE Alu 25 117 0 4 1795 207 116 70 0 chr1 158671116 158671159 -38524273 + A-rich Low_complexity Low_complexity 1 46 0 4 1795 674 85 11 0 chr1 158672635 158672729 -38522703 - B1_Mur4 SINE Alu -9 141 47 4 1795 497 302 88 58 chr1 158673227 158673285 -38522147 - Arthur1 DNA Tip100 -6 3941 3874 4 1795 588 227 220 6 chr1 158673285 158673462 -38521970 + B3 SINE B2 2 216 0 4 1795 497 302 88 58 chr1 158673462 158673593 -38521839 - Arthur1 DNA Tip100 -74 3873 3749 4 1795 1258 71 11 42 chr1 158673593 158673784 -38521648 - B2_Mm1t SINE B2 -8 185 1 4 1795 497 302 88 58 chr1 158673784 158673955 -38521477 - Arthur1 DNA Tip100 -199 3748 3570 4 1795 239 324 47 47 chr1 158674221 158674328 -38521104 - Arthur1 DNA Tip100 -3362 585 479 4 1795 1055 114 0 0 chr1 158674452 158674592 -38520840 - B1_Mur4 SINE Alu -8 142 3 4 1795 315 305 75 30 chr1 158674710 158674898 -38520534 - MER57D LTR ERV1 -208 226 21 4 1795 582 313 175 38 chr1 158674905 158675197 -38520235 - Arthur1 DNA Tip100 -3612 335 4 4 1795 1043 308 75 19 chr1 158676013 158676384 -38519048 - MER99 DNA hAT? -53 778 387 4 1795 397 301 60 8 chr1 158676384 158676518 -38518914 + B1F SINE Alu 2 142 -7 4 1795 183 42 0 0 chr1 158676568 158676592 -38518840 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 4 1795 534 272 88 7 chr1 158676741 158676889 -38518543 + RSINE1 SINE B4 2 161 -4 4 1795 1021 279 67 34 chr1 158676905 158677261 -38518171 - MER99 DNA hAT? -462 369 2 4 1795 184 296 83 14 chr1 158678086 158678158 -38517274 + MIRc SINE MIR 21 97 -171 4 1795 29 28 0 0 chr1 158679193 158679229 -38516203 + AT_rich Low_complexity Low_complexity 1 36 0 4 1795 1095 215 10 0 chr1 158679286 158679491 -38515941 - B3 SINE B2 -7 209 3 4 1795 411 21 0 0 chr1 158679508 158679556 -38515876 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1795 204 67 0 0 chr1 158679947 158679977 -38515455 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 1795 37 0 0 0 chr1 158679977 158680014 -38515418 + AT_rich Low_complexity Low_complexity 1 37 0 4 1795 3335 68 2 103 chr1 158680020 158680545 -38514887 - Lx3B LINE L1 -2 6971 6500 4 1795 1359 236 80 48 chr1 158680554 158680840 -38514592 - MTD LTR MaLR -14 405 105 4 1795 1162 126 25 10 chr1 158680840 158681040 -38514392 + Lx LINE L1 6449 6651 -3 4 1795 1359 236 80 48 chr1 158681040 158681127 -38514305 - MTD LTR MaLR -315 104 21 4 1795 272 246 27 14 chr1 158681889 158681963 -38513469 - PB1D9 SINE Alu 0 120 46 4 1795 873 283 56 75 chr1 158682610 158682984 -38512448 + ORR1D2 LTR MaLR 1 367 -3 4 1795 577 283 34 86 chr1 158683140 158683349 -38512083 - B3A SINE B2 0 198 1 4 1795 26 64 0 0 chr1 158683553 158683600 -38511832 + AT_rich Low_complexity Low_complexity 1 47 0 4 1795 852 305 24 31 chr1 158683600 158683888 -38511544 + B4A SINE B4 3 288 -4 4 1795 468 0 0 0 chr1 158683903 158683955 -38511477 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1795 243 0 0 0 chr1 158683955 158683981 -38511451 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1795 334 339 90 65 chr1 158684161 158684451 -38510981 + HAL1 LINE L1 2211 2507 0 4 1795 231 36 0 0 chr1 158685211 158685239 -38510193 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1795 181 286 68 51 chr1 158685807 158685866 -38509566 + MIRm SINE MIR 120 179 -97 4 1795 313 137 0 0 chr1 158685891 158685942 -38509490 + L1M LINE L1 5331 5381 -799 4 1795 738 222 242 16 chr1 158686161 158686413 -38509019 + ORR1D2 LTR MaLR 43 337 -22 4 1795 180 0 0 0 chr1 158686473 158686493 -38508939 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1795 376 70 0 53 chr1 158686972 158687047 -38508385 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 4 1795 308 321 67 93 chr1 158687100 158687368 -38508064 - B4A SINE B4 -30 262 2 4 1795 753 329 126 35 chr1 158687825 158688276 -38507156 - MLT1D LTR MaLR -7 498 7 4 1795 363 351 70 38 chr1 158688423 158688580 -38506852 - MamGypLTR1b LTR Gypsy -2 780 619 4 1795 306 67 0 0 chr1 158689260 158689305 -38506127 + (CATA)n Simple_repeat Simple_repeat 3 47 0 4 1795 189 0 0 0 chr1 158689305 158689325 -38506107 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1795 834 225 128 0 chr1 158689412 158689599 -38505833 + B3 SINE B2 1 211 -5 4 1795 423 0 0 0 chr1 158689689 158689736 -38505696 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1795 693 162 80 7 chr1 158690249 158690386 -38505046 - B1F2 SINE Alu -1 148 2 5 1795 796 175 42 0 chr1 158690436 158690579 -38504853 - B1_Mur3 SINE Alu 0 149 1 5 1795 469 240 51 45 chr1 158690609 158690766 -38504666 - RSINE1 SINE B4 -6 159 2 5 1795 323 310 30 0 chr1 158690798 158690898 -38504534 - MIR SINE MIR -34 228 126 5 1795 366 231 79 47 chr1 158691277 158691404 -38504028 + MER121 Unknown Unknown 112 242 -170 5 1795 230 344 108 8 chr1 158691933 158692062 -38503370 + MIRb SINE MIR 32 173 -95 5 1795 327 25 0 0 chr1 158692297 158692337 -38503095 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1795 189 0 0 0 chr1 158692356 158692377 -38503055 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1795 500 227 344 0 chr1 158692834 158692988 -38502444 - B3 SINE B2 -8 208 2 5 1795 234 345 40 17 chr1 158693368 158693488 -38501944 + MIRc SINE MIR 48 171 -97 5 1795 396 232 12 0 chr1 158693663 158693745 -38501687 + ID4 SINE ID 1 83 0 5 1795 371 171 13 0 chr1 158694204 158694280 -38501152 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1795 305 233 21 62 chr1 158694472 158694568 -38500864 + MER57C2 LTR ERV1 315 406 -28 5 1795 561 194 223 29 chr1 158694828 158695003 -38500429 - B3 SINE B2 -7 209 1 5 1795 1028 242 83 12 chr1 158695331 158695670 -38499762 - L1MA4 LINE L1 -369 5931 5569 5 1795 6043 85 32 28 chr1 158695778 158696767 -38498665 + RLTR13D3 LTR ERVK 1 1106 -8 5 1795 376 62 0 0 chr1 158697175 158697223 -38498209 - ORR1A4 LTR MaLR -8 321 274 5 1795 1442 75 27 0 chr1 158697282 158697469 -38497963 - B2_Mm1a SINE B2 0 193 2 5 1795 1718 141 16 66 chr1 158697469 158697773 -38497659 - ORR1A4 LTR MaLR -40 289 1 5 1795 683 215 38 21 chr1 158698546 158698730 -38496702 - RLTR11B LTR ERVK -24 504 284 5 1795 845 237 51 58 chr1 158698811 158699106 -38496326 - RLTR11B LTR ERVK -160 293 1 5 1795 791 272 59 15 chr1 158701122 158701394 -38494038 - B4A SINE B4 -8 284 1 5 1795 761 181 135 57 chr1 158701504 158701697 -38493735 + B3 SINE B2 1 208 -8 5 1795 445 141 21 21 chr1 158701706 158701800 -38493632 + CT-rich Low_complexity Low_complexity 3 96 0 5 1795 384 247 21 0 chr1 158702925 158702936 -38492496 - ID_B1 SINE B4 -43 181 84 5 1795 394 235 24 0 chr1 158702936 158703021 -38492411 - PB1D10 SINE Alu -28 89 3 5 1795 541 277 76 15 chr1 158703059 158703191 -38492241 + B1F2 SINE Alu 9 148 -1 5 1795 711 281 47 20 chr1 158703328 158703626 -38491806 - L1MC1 LINE L1 -183 6150 5845 5 1795 1846 182 54 11 chr1 158703649 158703999 -38491433 - ORR1D1 LTR MaLR -7 367 3 5 1795 706 247 97 37 chr1 158704014 158704312 -38491120 - L1MC1 LINE L1 -486 5847 5532 5 1795 609 234 27 34 chr1 158704494 158704640 -38490792 + B1F2 SINE Alu 5 149 0 5 1795 357 109 0 0 chr1 158704674 158704729 -38490703 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1795 1008 292 51 0 chr1 158704742 158704995 -38490437 - B4 SINE B4 -5 287 22 5 1795 1472 160 0 0 chr1 158705831 158706056 -38489376 - URR1B DNA MER1_type 0 225 1 5 1795 495 162 172 41 chr1 158706484 158706606 -38488826 - B1F2 SINE Alu -11 138 1 5 1795 207 321 92 0 chr1 158706606 158706715 -38488717 - MIRb SINE MIR -99 169 51 5 1795 2493 153 39 7 chr1 158707027 158707435 -38487997 - MTC LTR MaLR 0 421 1 5 1795 184 264 68 27 chr1 158707664 158707738 -38487694 + MIRm SINE MIR 175 251 -25 5 1795 623 36 0 12 chr1 158707900 158707983 -38487449 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1795 193 75 24 24 chr1 158708633 158708674 -38486758 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 5 1795 1138 36 0 14 chr1 158708674 158708816 -38486616 - B1_Mus1 SINE Alu 0 148 9 5 1795 281 306 12 12 chr1 158710069 158710155 -38485277 + MER5B DNA MER1_type 67 152 -26 5 1795 207 0 0 0 chr1 158711089 158711112 -38484320 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1795 535 90 0 37 chr1 158712926 158713007 -38482425 + B1_Mus2 SINE Alu 69 146 -1 5 1795 704 284 182 31 chr1 158713136 158713460 -38481972 + MLT1A LTR MaLR 1 373 -1 5 1795 211 0 0 81 chr1 158714011 158714048 -38481384 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1795 1168 51 0 0 chr1 158714048 158714186 -38481246 - B1_Mus1 SINE Alu -10 138 1 5 1795 279 325 67 37 chr1 158715129 158715263 -38480169 + MIRb SINE MIR 97 234 -34 5 1795 240 230 100 33 chr1 158715772 158715862 -38479570 - MIRc SINE MIR -62 206 111 5 1795 330 167 0 68 chr1 158716642 158716745 -38478687 - L1Md_F2 LINE L1 0 6582 6487 5 1795 1085 193 11 82 chr1 158716749 158717105 -38478327 - RMER17C LTR ERVK 0 410 80 5 1795 887 212 7 92 chr1 158717110 158717149 -38478283 - RMER17B LTR ERVK -519 439 401 5 1795 1305 83 0 0 chr1 158717149 158717329 -38478103 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1795 887 212 7 92 chr1 158717329 158717570 -38477862 - RMER17B LTR ERVK -558 400 183 5 1795 386 321 28 0 chr1 158718137 158718243 -38477189 + MIRc SINE MIR 19 127 -141 5 1795 1457 70 38 0 chr1 158718255 158718440 -38476992 - B2_Mm2 SINE B2 -3 192 1 5 1795 324 188 0 0 chr1 158719383 158719447 -38475985 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1795 547 276 0 76 chr1 158719518 158719675 -38475757 - B4A SINE B4 -147 145 1 5 1795 1386 147 4 67 chr1 158719749 158719989 -38475443 + URR1A DNA MER1_type 2 226 0 5 1795 504 48 0 0 chr1 158720532 158720595 -38474837 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1795 1364 74 40 0 chr1 158720596 158720771 -38474661 - B2_Mm2 SINE B2 -12 183 2 5 1795 233 277 0 0 chr1 158721048 158721095 -38474337 - RSINE1 SINE B4 -105 60 14 5 1795 633 110 25 0 chr1 158721133 158721251 -38474181 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 5 1795 952 214 20 15 chr1 158721251 158721446 -38473986 - B3 SINE B2 -19 197 2 5 1795 363 295 26 9 chr1 158721653 158721766 -38473666 + RMER12 LTR ERVK 771 885 -437 5 1795 619 335 62 60 chr1 158721767 158722218 -38473214 - Lx9 LINE L1 -253 7391 6940 5 1795 378 279 34 68 chr1 158722349 158722495 -38472937 - B1F1 SINE Alu -8 141 1 5 1795 21 0 0 0 chr1 158722497 158722518 -38472914 + AT_rich Low_complexity Low_complexity 1 21 0 5 1795 298 306 20 39 chr1 158722717 158722819 -38472613 - RSINE1 SINE B4 -61 104 5 5 1795 968 274 34 61 chr1 158722859 158723271 -38472161 - Lx8 LINE L1 0 7473 7073 5 1795 263 279 35 26 chr1 158723392 158723459 -38471973 + polypyrimidine Low_complexity Low_complexity 49 117 0 5 1795 618 51 0 0 chr1 158723459 158723537 -38471895 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1795 263 279 35 26 chr1 158723537 158723583 -38471849 + polypyrimidine Low_complexity Low_complexity 3 48 0 5 1795 422 95 105 0 chr1 158724346 158724438 -38470994 + B1_Mus2 SINE Alu 2 147 0 5 1795 195 100 0 0 chr1 158724488 158724518 -38470914 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1795 216 276 142 33 chr1 158725179 158725299 -38470133 + MER5A DNA MER1_type 53 185 -4 5 1795 197 299 104 49 chr1 158725376 158725520 -38469912 - MER5B DNA MER1_type -26 152 1 5 1795 438 227 0 85 chr1 158726005 158726135 -38469297 + B4A SINE B4 2 120 -172 5 1795 417 39 0 0 chr1 158726930 158726981 -38468451 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1795 1019 257 13 10 chr1 158727082 158727414 -38468018 - Lx7 LINE L1 -393 5907 5596 5 1795 425 232 0 0 chr1 158727414 158727509 -38467923 - B1_Mur1 SINE Alu 0 149 55 5 224 2722 234 195 25 chr1 158727537 158728830 -38466602 - Lx7 LINE L1 -1141 4739 3228 5 1796 491 273 53 73 chr1 158728810 158729110 -38466322 - Lx7 LINE L1 -3005 2875 2582 5 1796 2032 88 18 27 chr1 158729110 158729439 -38465993 - IAPEY2_LTR LTR ERVK 0 357 32 5 1796 1165 244 82 18 chr1 158729448 158729806 -38465626 - Lx7 LINE L1 -3240 2607 2210 5 1796 279 0 0 0 chr1 158729806 158729837 -38465595 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1796 1165 239 82 16 chr1 158729837 158729886 -38465546 - Lx7 LINE L1 -3671 2209 2161 5 1796 646 126 58 0 chr1 158729930 158730033 -38465399 - B1_Mur4 SINE Alu -16 134 26 5 1796 301 338 75 7 chr1 158730213 158730359 -38465073 - Tigger7 DNA MER2_type -2124 367 212 5 1796 236 213 0 0 chr1 158730370 158730417 -38465015 - Tigger7 DNA MER2_type -2395 96 50 5 1796 226 282 99 37 chr1 158730700 158730781 -38464651 + RSINE1 SINE B4 1 86 -79 5 1796 670 284 62 0 chr1 158730710 158730904 -38464528 + B3 SINE B2 11 216 0 5 1796 386 53 0 35 chr1 158730941 158730999 -38464433 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 5 1796 449 194 21 11 chr1 158731014 158731108 -38464324 - B1_Mur3 SINE Alu -14 135 41 5 1796 243 0 0 0 chr1 158731239 158731266 -38464166 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1796 1195 62 0 0 chr1 158731266 158731412 -38464020 - B1_Mm SINE Alu 0 147 2 5 1796 345 303 111 44 chr1 158733067 158733364 -38462068 + L1M5 LINE L1 4387 4703 -1443 5 1796 328 166 44 22 chr1 158733549 158733685 -38461747 + RMER17B LTR ERVK 309 447 -511 5 1796 212 59 0 29 chr1 158733691 158733726 -38461706 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 5 1796 342 0 0 0 chr1 158733788 158733826 -38461606 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1796 275 290 30 24 chr1 158733833 158733943 -38461489 + PB1D10 SINE Alu 2 113 -14 5 1796 21 0 0 0 chr1 158737552 158737573 -38457859 + AT_rich Low_complexity Low_complexity 1 21 0 5 1796 1931 62 11 15 chr1 158740141 158740401 -38455031 - L1Md_F2 LINE L1 -1 6581 6323 5 1796 480 246 44 0 chr1 158740673 158740787 -38454645 - B3A SINE B2 -77 121 3 5 1796 317 246 198 0 chr1 158741049 158741065 -38454367 - B4A SINE B4 -46 246 96 5 1796 613 139 18 18 chr1 158741065 158741175 -38454257 - PB1D9 SINE Alu 0 120 11 5 1796 558 190 0 0 chr1 158741274 158741390 -38454042 + GA-rich Low_complexity Low_complexity 2 117 0 5 1796 1434 40 0 0 chr1 158741391 158741568 -38453864 + (GGA)n Simple_repeat Simple_repeat 2 178 0 5 1796 221 160 77 39 chr1 158742101 158742153 -38453279 - ID2 SINE ID -29 54 1 6 1796 30 0 0 0 chr1 158742833 158742863 -38452569 + AT_rich Low_complexity Low_complexity 1 30 0 6 1796 287 219 47 0 chr1 158744677 158744741 -38450691 + B1_Mur1 SINE Alu 77 143 -6 6 1796 252 86 0 0 chr1 158744945 158744980 -38450452 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1796 1500 42 5 0 chr1 158745056 158745247 -38450185 - L1_Mus2 LINE L1 0 6566 6375 6 1796 1608 172 105 0 chr1 158745494 158745819 -38449613 + ORR1B2 LTR MaLR 1 359 -8 6 1796 375 169 0 0 chr1 158745985 158746056 -38449376 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1796 282 206 86 29 chr1 158746430 158746500 -38448932 - PB1D7 SINE Alu -7 113 40 6 1796 373 194 184 0 chr1 158746981 158747084 -38448348 - B1_Mur2 SINE Alu -11 138 17 6 1796 180 170 54 54 chr1 158747103 158747159 -38448273 - MIRc SINE MIR -106 162 107 6 1796 2279 85 0 0 chr1 158747371 158747690 -38447742 + ORR1A2 LTR MaLR 1 319 -8 6 1796 417 198 245 26 chr1 158748178 158748370 -38447062 + B4A SINE B4 20 253 -39 6 1796 1026 77 0 40 chr1 158749018 158749167 -38446265 - B1_Mus1 SINE Alu -1 147 5 6 1796 1403 155 91 24 chr1 158749508 158749805 -38445627 + RLTR14 LTR ERV1 66 382 0 6 1796 1160 186 28 5 chr1 158752820 158753031 -38442401 + B3 SINE B2 1 216 0 6 1796 25 31 0 0 chr1 158754221 158754253 -38441179 + AT_rich Low_complexity Low_complexity 1 32 0 6 1796 252 300 11 53 chr1 158754290 158754385 -38441047 + PB1D10 SINE Alu 26 116 -1 6 1796 210 265 162 0 chr1 158754403 158754471 -38440961 + ID2 SINE ID 2 80 -3 6 1796 204 236 0 18 chr1 158755385 158755441 -38439991 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 1796 1148 69 7 0 chr1 158755952 158756096 -38439336 - B1_Mus2 SINE Alu 0 147 3 6 1796 418 271 43 7 chr1 158756524 158756665 -38438767 + B3A SINE B2 1 146 -52 6 1796 189 132 0 0 chr1 158756688 158756726 -38438706 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1796 319 238 36 0 chr1 158756726 158756810 -38438622 - PB1D7 SINE Alu -16 104 18 6 1796 622 241 218 29 chr1 158757155 158757394 -38438038 + B4A SINE B4 5 288 -4 6 1796 675 167 184 28 chr1 158758020 158758199 -38437233 + URR1A DNA MER1_type 20 226 0 6 1796 348 136 49 12 chr1 158758598 158758680 -38436752 + T-rich Low_complexity Low_complexity 5 89 0 6 1796 191 114 29 0 chr1 158758675 158758710 -38436722 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 6 1796 276 217 71 12 chr1 158759765 158759849 -38435583 + B4A SINE B4 81 169 -123 6 1796 481 172 10 39 chr1 158759778 158759881 -38435551 + PB1D9 SINE Alu 14 113 -7 6 1796 299 270 30 10 chr1 158759882 158759983 -38435449 + PB1D10 SINE Alu 2 104 -13 6 1796 1039 89 150 23 chr1 158759986 158760159 -38435273 + B2_Mm2 SINE B2 1 195 0 6 1796 534 175 185 20 chr1 158761073 158761219 -38434213 + B3 SINE B2 3 172 -44 6 1796 817 194 7 20 chr1 158761456 158761603 -38433829 + B1_Mus2 SINE Alu 1 145 -2 6 1796 226 315 44 26 chr1 158762462 158762576 -38432856 - RSINE1 SINE B4 -47 118 3 6 1796 243 0 0 0 chr1 158763699 158763726 -38431706 + (CACCC)n Simple_repeat Simple_repeat 1 27 0 6 1796 278 299 134 17 chr1 158765555 158765674 -38429758 - ID_B1 SINE B4 0 224 92 6 1796 296 292 160 0 chr1 158765578 158765684 -38429748 - B1_Mus1 SINE Alu -25 123 1 6 1796 189 0 0 0 chr1 158767767 158767788 -38427644 + (CAA)n Simple_repeat Simple_repeat 2 22 0 6 1796 1962 105 146 19 chr1 158767819 158768188 -38427244 + MTC LTR MaLR 6 421 0 6 1796 207 100 0 0 chr1 158768387 158768417 -38427015 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1796 551 175 61 9 chr1 158768417 158768532 -38426900 - B1_Mur1 SINE Alu -7 142 22 6 1796 504 0 0 0 chr1 158768679 158768735 -38426697 + (TTTTC)n Simple_repeat Simple_repeat 4 59 0 6 1796 303 28 0 0 chr1 158768736 158768772 -38426660 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1796 25 0 0 0 chr1 158770069 158770094 -38425338 + AT_rich Low_complexity Low_complexity 1 25 0 6 1796 216 0 0 0 chr1 158770646 158770670 -38424762 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 6 1796 250 333 0 0 chr1 158772183 158772255 -38423177 + MIR SINE MIR 18 89 -173 6 1796 478 294 96 26 chr1 158773477 158773802 -38421630 + ORR1D2 LTR MaLR 5 365 -5 6 1796 256 276 40 30 chr1 158773950 158774051 -38421381 - Lx7 LINE L1 -1766 5930 5829 6 1796 933 49 0 0 chr1 158774085 158774208 -38421224 + B1_Mus2 SINE Alu 25 147 0 6 1796 324 248 57 85 chr1 158774086 158774227 -38421205 + B4A SINE B4 111 247 -45 6 1796 28 48 0 0 chr1 158774262 158774304 -38421128 + AT_rich Low_complexity Low_complexity 1 42 0 6 1796 790 254 115 40 chr1 158774308 158774657 -38420775 - L1M2 LINE L1 -507 5793 5419 6 1796 2622 143 193 6 chr1 158777565 158778058 -38417374 - RMER4B LTR ERVK 0 585 1 6 1796 10557 24 0 0 chr1 158778991 158780956 -38414476 - L1Md_T LINE L1 -1 6581 4617 6 1796 237 33 0 0 chr1 158781857 158781887 -38413545 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1796 23 0 0 0 chr1 158783012 158783035 -38412397 + AT_rich Low_complexity Low_complexity 1 23 0 6 1796 551 278 105 57 chr1 158783077 158783287 -38412145 - B4A SINE B4 -72 220 1 6 1796 478 275 40 32 chr1 158784116 158784240 -38411192 + B1F SINE Alu 23 147 -2 6 1796 29 0 0 0 chr1 158784271 158784300 -38411132 + AT_rich Low_complexity Low_complexity 1 29 0 6 1796 1176 87 70 0 chr1 158784411 158784432 -38411000 - B2_Mm2 SINE B2 -10 185 165 6 1796 207 0 0 0 chr1 158784432 158784455 -38410977 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 6 1796 1176 87 70 0 chr1 158784455 158784605 -38410827 - B2_Mm2 SINE B2 -31 164 3 6 1796 231 114 0 0 chr1 158785356 158785400 -38410032 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1796 1552 38 32 0 chr1 158785404 158785590 -38409842 - B2_Mm1a SINE B2 0 193 2 6 1796 339 89 0 0 chr1 158785707 158785763 -38409669 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 6 1796 232 200 0 0 chr1 158785763 158785803 -38409629 + RSINE1 SINE B4 85 124 -41 6 1796 494 284 7 39 chr1 158786121 158786132 -38409300 - ID_B1 SINE B4 -1 223 149 6 1796 582 246 30 7 chr1 158786132 158786267 -38409165 - B1F1 SINE Alu -10 139 2 6 1796 1027 139 37 16 chr1 158786331 158786521 -38408911 - B2_Mm2 SINE B2 0 195 2 6 1796 1165 117 6 6 chr1 158788977 158789138 -38406294 + B2_Mm1t SINE B2 2 163 -30 6 1796 450 0 0 0 chr1 158789138 158789188 -38406244 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 6 1796 1165 117 6 6 chr1 158789188 158789206 -38406226 + B2_Mm1t SINE B2 164 181 -12 6 1796 226 349 207 52 chr1 158789224 158789371 -38406061 - L2a LINE L2 -25 3401 3211 6 1796 1383 218 17 105 chr1 158789371 158789781 -38405651 - MTE2a LTR MaLR -2 377 4 6 1796 226 349 207 52 chr1 158789781 158789938 -38405494 - L2a LINE L2 -216 3210 3050 6 1796 22 35 0 0 chr1 158791185 158791214 -38404218 + AT_rich Low_complexity Low_complexity 1 29 0 6 1796 314 268 0 0 chr1 158791513 158791584 -38403848 + ID4_ SINE ID 2 72 -11 6 1796 361 70 0 81 chr1 158792478 158792540 -38402892 + B1_Mur3 SINE Alu 93 149 0 6 1796 231 61 0 0 chr1 158792683 158792716 -38402716 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1796 492 268 65 0 chr1 158793084 158793207 -38402225 + RSINE1 SINE B4 4 134 -31 6 1796 330 281 65 72 chr1 158793441 158793579 -38401853 + ID_B1 SINE B4 1 137 -87 6 1796 359 281 61 56 chr1 158795885 158796081 -38399351 + B3A SINE B2 2 198 0 6 1796 1090 259 132 81 chr1 158797731 158798389 -38397043 + RMER13A LTR ERVK 1 696 -212 6 1796 895 67 0 0 chr1 158798971 158799090 -38396342 - B1_Mus1 SINE Alu -29 119 1 6 1796 189 0 0 0 chr1 158800180 158800201 -38395231 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1796 1135 75 0 0 chr1 158800554 158800701 -38394731 + B1_Mus2 SINE Alu 1 147 0 6 1796 1096 202 181 21 chr1 158800872 158801160 -38394272 + MTD LTR MaLR 79 412 -7 6 1796 226 252 45 119 chr1 158801225 158801401 -38394031 - L1MA9 LINE L1 -195 6117 5955 6 1796 370 229 25 25 chr1 158801419 158801540 -38393892 - L1MA9 LINE L1 -766 5531 5411 6 1796 737 190 194 33 chr1 158801732 158801912 -38393520 - B3 SINE B2 0 216 8 6 1796 476 290 229 45 chr1 158802049 158802385 -38393047 - MTE-int LTR MaLR -1166 414 17 6 1796 503 293 120 82 chr1 158802668 158803010 -38392422 + ORR1E LTR MaLR 1 355 -4 6 1796 536 326 132 5 chr1 158803022 158803437 -38391995 - L1MB3 LINE L1 -150 6033 5566 6 1796 252 274 223 12 chr1 158804035 158804201 -38391231 + MER3 DNA MER1_type 4 204 -5 6 1796 308 307 248 14 chr1 158804611 158804889 -38390543 + L2 LINE L2 1214 1556 -1863 6 1796 344 301 240 39 chr1 158804907 158805394 -38390038 + L2 LINE L2 1435 2019 -1400 6 1796 279 0 0 0 chr1 158805872 158805903 -38389529 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1796 1254 41 0 0 chr1 158805909 158806056 -38389376 - B1_Mus2 SINE Alu 0 147 1 6 1796 31167 83 6 3 chr1 158806258 158809225 -38386207 - L1_Mus1 LINE L1 0 6567 3605 6 1796 1539 52 0 5 chr1 158809225 158809419 -38386013 + B2_Mm1t SINE B2 1 193 0 6 1796 31167 97 3 10 chr1 158809419 158812012 -38383420 - L1_Mus1 LINE L1 -2279 3604 1072 6 1796 2279 158 31 2 chr1 158811988 158812444 -38382988 - L1_Mus1 LINE L1 -5423 1193 725 6 1796 390 267 22 7 chr1 158812444 158812580 -38382852 - L1_Mus1 LINE L1 -5804 812 675 6 1796 470 236 6 86 chr1 158812654 158812837 -38382595 - L1VL1 LINE L1 -6030 392 50 6 1796 295 308 17 0 chr1 158813138 158813255 -38382177 + G-rich Low_complexity Low_complexity 4 122 0 6 1796 579 341 0 18 chr1 158813264 158813434 -38381998 + B4 SINE B4 126 292 0 6 1796 432 307 8 26 chr1 158813493 158813610 -38381822 + PB1D10 SINE Alu 3 117 0 6 1796 868 142 35 0 chr1 158813675 158813816 -38381616 + B1_Mus2 SINE Alu 2 147 0 7 1796 417 238 75 0 chr1 158813870 158813950 -38381482 + PB1D7 SINE Alu 20 105 -15 7 1796 184 354 31 0 chr1 158815554 158815619 -38379813 - MIRm SINE MIR -4 272 206 7 1796 327 257 97 9 chr1 158815642 158815756 -38379676 + MLT2C1 LTR ERVL 212 335 -62 7 1796 268 258 32 0 chr1 158816591 158816653 -38378779 + ID_B1 SINE B4 93 156 -68 7 1796 683 214 208 0 chr1 158816681 158816854 -38378578 - B3 SINE B2 -5 211 3 7 1796 195 152 0 0 chr1 158816904 158816950 -38378482 + A-rich Low_complexity Low_complexity 1 46 0 7 1796 23 33 0 0 chr1 158817437 158817467 -38377965 + AT_rich Low_complexity Low_complexity 1 30 0 7 1796 889 196 11 5 chr1 158817477 158817662 -38377770 + B2_Mm2 SINE B2 1 186 -9 7 1796 413 338 82 92 chr1 158817739 158818032 -38377400 + B4A SINE B4 1 290 -2 7 1796 589 230 25 62 chr1 158818545 158818707 -38376725 - B4A SINE B4 -4 288 133 7 1796 299 283 138 92 chr1 158818899 158819024 -38376408 + Charlie4 DNA MER1_type 2 111 -1850 7 1796 1110 206 0 9 chr1 158819024 158819240 -38376192 + B3 SINE B2 2 215 -1 7 1796 299 283 138 92 chr1 158819240 158819375 -38376057 + Charlie4 DNA MER1_type 112 274 -1687 7 1796 750 167 12 18 chr1 158819663 158819828 -38375604 + MERVL_2A-int LTR ERVL 5457 5620 -141 7 1796 1203 164 196 77 chr1 158819831 158820167 -38375265 + MT2A LTR ERVL 158 533 0 7 1796 298 295 236 8 chr1 158820665 158820788 -38374644 + RSINE1 SINE B4 13 163 -2 7 1796 243 88 0 0 chr1 158820803 158820837 -38374595 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1796 462 175 0 59 chr1 158820864 158820949 -38374483 + ID4_ SINE ID 4 83 0 7 1796 180 97 0 0 chr1 158821429 158821460 -38373972 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 7 1796 340 243 36 0 chr1 158821676 158821775 -38373657 + B4 SINE B4 3 111 -181 7 1796 653 189 200 0 chr1 158821799 158821974 -38373458 + B3 SINE B2 3 212 -4 7 1796 486 232 0 50 chr1 158822164 158822264 -38373168 - PB1D10 SINE Alu -11 106 12 7 1796 204 173 75 19 chr1 158822280 158822333 -38373099 + CT-rich Low_complexity Low_complexity 1 56 0 7 1796 23 33 0 0 chr1 158824074 158824104 -38371328 + AT_rich Low_complexity Low_complexity 1 30 0 7 1796 735 158 53 90 chr1 158824131 158824319 -38371113 - B2_Mm2 SINE B2 -13 182 2 7 1796 1125 71 0 0 chr1 158824839 158824979 -38370453 + B1_Mus1 SINE Alu 1 140 -8 7 1796 222 37 0 0 chr1 158824982 158825009 -38370423 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1796 1126 231 117 13 chr1 158825026 158825356 -38370076 + ORR1D1 LTR MaLR 3 419 -2 7 1796 900 260 128 24 chr1 158825603 158825938 -38369494 + ORR1D2 LTR MaLR 1 370 0 7 1796 186 171 0 0 chr1 158826555 158826596 -38368836 + (CCA)n Simple_repeat Simple_repeat 3 43 0 7 1796 505 246 199 11 chr1 158826749 158826930 -38368502 + B3 SINE B2 2 216 0 7 1796 222 37 0 0 chr1 158827119 158827146 -38368286 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 7 1796 286 328 62 16 chr1 158827712 158827836 -38367596 + L2a LINE L2 3285 3399 -27 7 1796 462 253 128 4 chr1 158828208 158828443 -38366989 + MTEa LTR MaLR 49 356 -23 7 1796 632 239 0 42 chr1 158828543 158828687 -38366745 + ID_B1 SINE B4 80 217 -7 7 1796 449 297 87 9 chr1 158828838 158829069 -38366363 + MER33 DNA MER1_type 45 293 -31 7 1796 390 226 27 36 chr1 158829928 158830038 -38365394 + MLT1A1 LTR MaLR 300 408 0 7 1796 279 284 84 25 chr1 158830244 158830363 -38365069 + RSINE1 SINE B4 39 164 -1 7 1796 471 280 87 8 chr1 158831008 158831134 -38364298 + RSINE1 SINE B4 12 147 -18 7 1796 1279 86 26 26 chr1 158831184 158831376 -38364056 + B2_Mm2 SINE B2 2 193 -2 7 1796 586 339 42 21 chr1 158832112 158832395 -38363037 + B4A SINE B4 1 289 -3 7 1796 1248 189 144 29 chr1 158832929 158833276 -38362156 + MTD LTR MaLR 16 405 -14 7 1796 894 265 83 56 chr1 158833280 158833850 -38361582 + MTD-int LTR MaLR 6 681 -577 7 1796 898 236 32 57 chr1 158833843 158834122 -38361310 + MTE2a LTR MaLR 99 370 -9 7 1796 1048 286 44 28 chr1 158834126 158834489 -38360943 + MTE2a-int LTR MaLR 1 369 -1211 7 1796 975 110 19 6 chr1 158834730 158834886 -38360546 + B2_Mm1a SINE B2 2 159 -34 7 1796 252 86 0 0 chr1 158834886 158834921 -38360511 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 7 1796 277 274 0 0 chr1 158835689 158835762 -38359670 + B4A SINE B4 89 161 -131 7 1796 228 290 92 18 chr1 158835762 158835798 -38359634 + PB1D9 SINE Alu 4 120 0 7 1796 287 287 21 0 chr1 158835818 158835912 -38359520 + MLT1F1 LTR MaLR 73 168 -401 7 1796 1125 76 21 0 chr1 158836459 158836604 -38358828 + B1_Mus1 SINE Alu 1 148 0 7 1796 181 0 69 0 chr1 158836606 158836635 -38358797 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1796 641 259 0 7 chr1 158836750 158836894 -38358538 + B1F SINE Alu 2 144 -5 7 1796 227 279 0 14 chr1 158836915 158836984 -38358448 + B4A SINE B4 10 77 -215 7 1796 257 323 0 10 chr1 158836976 158837073 -38358359 + B4A SINE B4 197 292 0 7 1796 890 135 28 0 chr1 158837260 158837401 -38358031 + B1_Mur4 SINE Alu 1 145 -5 7 1796 245 323 0 21 chr1 158838819 158838914 -38356518 + PB1D10 SINE Alu 2 94 -23 7 1796 257 234 136 30 chr1 158838924 158838990 -38356442 + ID4_ SINE ID 1 73 -10 7 1796 196 247 101 25 chr1 158839063 158839142 -38356290 + MIRb SINE MIR 103 187 -81 7 1796 391 300 43 7 chr1 158839615 158839756 -38355676 + B1F1 SINE Alu 2 147 -2 7 1796 1231 48 0 0 chr1 158839777 158839924 -38355508 + B1_Mus2 SINE Alu 1 147 0 7 1796 1163 62 0 0 chr1 158840420 158840566 -38354866 + B1_Mus2 SINE Alu 2 147 0 7 1796 268 218 6 165 chr1 158842143 158842380 -38353052 + C-rich Low_complexity Low_complexity 1 199 0 7 1796 459 171 34 0 chr1 158842601 158842689 -38352743 + B1_Mur1 SINE Alu 52 142 -7 7 1796 231 221 73 0 chr1 158843410 158843478 -38351954 + B3 SINE B2 4 76 -140 7 1796 220 177 32 16 chr1 158843530 158843593 -38351839 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1796 828 137 228 0 chr1 158844114 158844325 -38351107 - Lx9 LINE L1 -2 7642 7384 7 1796 1751 138 155 14 chr1 158844323 158844691 -38350741 + Lx9 LINE L1 6940 7359 -285 7 1796 432 130 0 0 chr1 158844705 158844774 -38350658 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1796 271 203 0 0 chr1 158844774 158844833 -38350599 + Lx9 LINE L1 7343 7401 -243 7 1796 583 148 157 11 chr1 158846824 158847002 -38348430 + Lx9 LINE L1 7440 7643 -1 7 1796 343 202 80 45 chr1 158847336 158847424 -38348008 + MLT2B4 LTR ERVL 396 486 -70 7 1796 297 0 0 0 chr1 158847547 158847580 -38347852 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1796 286 55 0 68 chr1 158848338 158848397 -38347035 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 7 1796 255 254 15 0 chr1 158849152 158849219 -38346213 - ID4_ SINE ID -2 81 14 7 1796 290 245 90 117 chr1 158849250 158849361 -38346071 + PB1D10 SINE Alu 5 112 -5 7 1796 460 241 134 48 chr1 158849459 158849598 -38345834 + MER2 DNA MER2_type 93 251 -94 7 1796 247 306 62 36 chr1 158849598 158849710 -38345722 - PB1D10 SINE Alu -2 115 1 7 1796 460 241 134 48 chr1 158849710 158849757 -38345675 + MER2 DNA MER2_type 252 295 -50 7 1796 288 77 0 0 chr1 158849825 158849864 -38345568 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1796 765 245 148 16 chr1 158849890 158850147 -38345285 + B4A SINE B4 2 292 0 7 1796 480 62 0 0 chr1 158850193 158850257 -38345175 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1796 312 155 31 13 chr1 158850258 158850335 -38345097 + L1M5 LINE L1 5389 5469 -975 7 1796 1056 183 149 50 chr1 158850792 158851154 -38344278 + RMER10A LTR ERVL 7 404 -38 7 1796 327 200 13 51 chr1 158852335 158852414 -38343018 + L1MA6 LINE L1 6103 6178 -122 7 1796 1327 75 32 0 chr1 158852516 158852674 -38342758 + B2_Mm1t SINE B2 1 160 -33 7 1796 243 0 0 0 chr1 158852674 158852701 -38342731 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1796 1327 75 32 0 chr1 158852701 158852728 -38342704 + B2_Mm1t SINE B2 161 191 -2 7 1796 405 0 0 0 chr1 158853063 158853108 -38342324 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1796 249 263 73 73 chr1 158853217 158853340 -38342092 - MER20 DNA MER1_type 0 219 97 7 1796 1420 68 15 26 chr1 158853481 158853676 -38341756 + B2_Mm2 SINE B2 2 194 -1 7 1796 292 204 186 42 chr1 158853863 158853981 -38341451 + B1F SINE Alu 10 144 -5 7 1796 328 173 37 0 chr1 158853988 158854069 -38341363 + GA-rich Low_complexity Low_complexity 2 85 0 7 1796 1199 55 0 0 chr1 158854091 158854237 -38341195 - B1_Mus2 SINE Alu 0 147 2 7 1796 844 70 55 0 chr1 158854372 158854500 -38340932 + URR1B DNA MER1_type 91 225 0 7 1796 233 303 12 61 chr1 158854794 158854959 -38340473 - L1M5 LINE L1 -722 5457 5301 7 1796 238 316 102 0 chr1 158855267 158855365 -38340067 + RMER1B Other Other 46 153 -913 7 1796 345 284 35 74 chr1 158855586 158855788 -38339644 + RMER1C Other Other 556 749 -593 7 1796 851 227 95 40 chr1 158855833 158856085 -38339347 + RMER1C Other Other 1068 1333 -9 7 1796 318 252 132 7 chr1 158856087 158856223 -38339209 - MIR SINE MIR -14 248 96 7 1796 550 154 151 17 chr1 158856238 158856357 -38339075 + B1F SINE Alu 12 146 -3 7 1796 1793 201 34 19 chr1 158856490 158856901 -38338531 + MTC LTR MaLR 1 417 -4 7 1796 274 330 42 52 chr1 158857604 158857700 -38337732 - RSINE1 SINE B4 -4 161 67 7 1796 334 187 39 39 chr1 158857915 158857993 -38337439 + ID4 SINE ID 3 80 -3 7 1796 775 163 0 12 chr1 158857993 158858161 -38337271 + GA-rich Low_complexity Low_complexity 1 166 0 7 1796 22 0 0 0 chr1 158858211 158858233 -38337199 + AT_rich Low_complexity Low_complexity 1 22 0 7 1797 669 162 357 0 chr1 158859723 158859877 -38335555 - B3 SINE B2 -3 213 5 7 1797 1244 34 0 7 chr1 158859930 158860078 -38335354 - B1_Mm SINE Alu 0 147 1 7 1797 306 279 8 83 chr1 158860341 158860462 -38334970 + RSINE1 SINE B4 4 115 -50 7 1797 225 0 0 0 chr1 158860466 158860491 -38334941 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1797 450 0 0 0 chr1 158860491 158860541 -38334891 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1797 237 242 16 31 chr1 158860689 158860753 -38334679 + B4A SINE B4 83 145 -147 8 1797 282 210 16 0 chr1 158860709 158860771 -38334661 + B1_Mus1 SINE Alu 18 80 -68 8 1797 318 231 23 11 chr1 158863374 158863482 -38331950 + B1_Mur1 SINE Alu 6 130 -19 8 1797 522 261 89 65 chr1 158863572 158863740 -38331692 + B4A SINE B4 1 172 -120 8 1797 238 260 173 27 chr1 158863779 158863929 -38331503 + L2 LINE L2 1362 1533 -1886 8 1797 279 238 18 73 chr1 158864254 158864363 -38331069 + HAL1 LINE L1 1450 1552 -955 8 1797 316 301 32 0 chr1 158864799 158864892 -38330540 - PB1D7 SINE Alu -8 112 17 8 1797 3748 30 14 0 chr1 158864892 158865322 -38330110 + RLTR10C LTR ERVK 1 436 0 8 1797 216 0 0 0 chr1 158865389 158865413 -38330019 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 8 1797 293 231 99 37 chr1 158865625 158865787 -38329645 + HAL1 LINE L1 2010 2181 -326 8 1797 1136 62 18 12 chr1 158865867 158866031 -38329401 + B2_Mm2 SINE B2 1 165 -30 8 1797 687 147 0 0 chr1 158866033 158866149 -38329283 + (TA)n Simple_repeat Simple_repeat 1 116 0 8 1797 222 222 0 36 chr1 158866477 158866533 -38328899 + G-rich Low_complexity Low_complexity 4 57 0 8 1797 647 209 0 8 chr1 158867852 158867982 -38327450 + B1_Mur2 SINE Alu 21 149 0 8 1797 24 0 0 0 chr1 158869454 158869478 -38325954 + GC_rich Low_complexity Low_complexity 1 24 0 8 1797 227 250 20 40 chr1 158869496 158869646 -38325786 + (CCG)n Simple_repeat Simple_repeat 3 149 0 8 1797 39 38 0 0 chr1 158869749 158869802 -38325630 + GC_rich Low_complexity Low_complexity 1 53 0 8 1797 255 93 0 0 chr1 158871177 158871220 -38324212 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 8 1797 321 26 0 0 chr1 158871225 158871263 -38324169 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1797 22 0 0 0 chr1 158871641 158871663 -38323769 + AT_rich Low_complexity Low_complexity 1 22 0 8 1797 364 270 76 129 chr1 158871670 158871972 -38323460 + B4A SINE B4 1 286 -6 8 1797 443 263 17 0 chr1 158871980 158872098 -38323334 + PB1D7 SINE Alu 1 120 0 8 1797 1681 31 0 0 chr1 158872961 158873153 -38322279 - B2_Mm1a SINE B2 0 193 2 8 1797 1046 128 35 56 chr1 158873183 158873381 -38322051 + B2_Mm2 SINE B2 1 194 -1 8 1797 339 268 0 0 chr1 158873503 158873574 -38321858 + ID4_ SINE ID 12 82 -1 8 1797 314 256 38 13 chr1 158874164 158874243 -38321189 + ID4_ SINE ID 3 83 0 8 1797 13289 68 21 17 chr1 158875025 158876283 -38319149 + L1VL2 LINE L1 179 1466 -2149 8 1797 1242 41 0 0 chr1 158876283 158876429 -38319003 + B1_Mm SINE Alu 2 147 0 8 1797 13289 81 28 52 chr1 158876429 158878017 -38317415 + L1VL2 LINE L1 1467 2988 -627 8 1797 1404 78 11 0 chr1 158878051 158878231 -38317201 - B2_Mm1t SINE B2 -10 183 2 8 1797 455 286 0 9 chr1 158878289 158878395 -38317037 - ID_B1 SINE B4 -34 190 86 8 1797 219 125 0 0 chr1 158878578 158878618 -38316814 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8 1797 406 242 107 8 chr1 158879152 158879273 -38316159 - B1F2 SINE Alu -15 134 2 8 1797 308 303 107 56 chr1 158879355 158879551 -38315881 - MIRb SINE MIR -16 252 47 8 1797 1492 68 5 0 chr1 158879760 158879950 -38315482 + B2_Mm1t SINE B2 1 191 -2 8 1797 227 352 77 7 chr1 158880004 158880147 -38315285 + B4A SINE B4 2 154 -138 8 1797 971 73 0 7 chr1 158880313 158880451 -38314981 + (GGGAA)n Simple_repeat Simple_repeat 1 137 0 8 1797 279 0 0 0 chr1 158880536 158880567 -38314865 + (TTTCC)n Simple_repeat Simple_repeat 3 33 0 8 1797 195 69 0 0 chr1 158880570 158880599 -38314833 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1797 471 253 85 75 chr1 158880616 158880804 -38314628 - B3A SINE B2 -6 192 3 8 1797 195 69 0 0 chr1 158880811 158880840 -38314592 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 8 1797 383 271 37 18 chr1 158881299 158881408 -38314024 - PB1D9 SINE Alu -9 111 1 8 1797 207 204 0 0 chr1 158881468 158881517 -38313915 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1797 306 270 0 0 chr1 158881521 158881595 -38313837 - ID4_ SINE ID -5 78 5 8 1797 180 0 0 0 chr1 158883858 158883878 -38311554 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1797 270 277 138 0 chr1 158883878 158883972 -38311460 - PB1D7 SINE Alu -13 107 1 8 1797 181 308 0 0 chr1 158884524 158884589 -38310843 - MIR SINE MIR -169 93 29 8 1797 204 318 59 15 chr1 158884817 158884953 -38310479 + MIRc SINE MIR 62 206 -62 8 1797 515 157 0 97 chr1 158885942 158886055 -38309377 - B1_Mus2 SINE Alu -45 102 1 8 1797 302 346 58 19 chr1 158886258 158886414 -38309018 - Tigger16a DNA Tigger -4 929 768 8 1797 660 172 108 36 chr1 158887231 158887370 -38308062 - B1_Mur1 SINE Alu 0 149 1 8 1797 480 196 0 11 chr1 158887404 158887497 -38307935 + B1_Mus2 SINE Alu 48 139 -8 8 1797 210 37 0 0 chr1 158887497 158887524 -38307908 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1797 1148 140 27 27 chr1 158887793 158888013 -38307419 - Lx4A LINE L1 -1 7057 6838 8 1797 387 0 0 0 chr1 158888078 158888121 -38307311 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1797 522 271 21 0 chr1 158888945 158889089 -38306343 + L1M5 LINE L1 4718 4864 -1282 8 1797 568 241 134 12 chr1 158889166 158889268 -38306164 - B4A SINE B4 -87 205 86 8 1797 225 0 0 0 chr1 158889268 158889293 -38306139 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1797 568 241 134 12 chr1 158889293 158889354 -38306078 - B4A SINE B4 -207 85 22 8 1797 270 219 0 0 chr1 158889455 158889519 -38305913 + CT-rich Low_complexity Low_complexity 1 64 0 8 1797 368 248 50 58 chr1 158889654 158889774 -38305658 - PB1D7 SINE Alu -1 119 1 8 1797 765 161 22 14 chr1 158889795 158889934 -38305498 + B1_Mur4 SINE Alu 10 149 -1 8 1797 326 286 112 11 chr1 158890013 158890200 -38305232 + L1M5 LINE L1 5198 5403 -743 8 1797 538 315 154 27 chr1 158890233 158890635 -38304797 - Arthur1 DNA Tip100 -3466 481 29 8 1797 265 292 0 0 chr1 158890653 158890718 -38304714 - ID4 SINE ID -16 67 3 8 1797 395 244 0 0 chr1 158890725 158890811 -38304621 - PB1D10 SINE Alu -8 109 24 8 1797 796 177 0 20 chr1 158890834 158890984 -38304448 + B1_Mus1 SINE Alu 2 148 0 8 1797 235 228 95 32 chr1 158892059 158892154 -38303278 + RMER10A LTR ERVL 324 424 -18 8 1797 730 295 18 75 chr1 158892159 158892438 -38302994 + B4A SINE B4 12 274 -18 8 1797 283 116 28 28 chr1 158892517 158892588 -38302844 + (CATA)n Simple_repeat Simple_repeat 2 72 0 8 1797 255 103 0 0 chr1 158892732 158892771 -38302661 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1797 882 249 87 32 chr1 158892774 158893027 -38302405 - B4 SINE B4 -25 267 1 8 1797 2508 80 0 32 chr1 158893037 158893088 -38302344 - ORR1A2 LTR MaLR 0 327 286 8 1797 1430 74 5 11 chr1 158893088 158893279 -38302153 - B2_Mm1a SINE B2 -3 190 1 8 1797 2508 80 0 32 chr1 158893279 158893565 -38301867 - ORR1A2 LTR MaLR -42 285 1 8 1797 185 274 126 2 chr1 158893971 158894052 -38301380 - MIRc SINE MIR -117 151 63 8 1797 2343 150 8 92 chr1 158895165 158895657 -38299775 - RLTR11B LTR ERVK 0 453 3 8 1797 729 217 131 0 chr1 158895704 158895902 -38299530 - ID_B1 SINE B4 0 224 1 8 1797 476 319 64 36 chr1 158896072 158896322 -38299110 + MIR SINE MIR 3 259 -3 8 1797 1216 61 0 0 chr1 158896753 158896901 -38298531 - B1_Mus1 SINE Alu 0 148 1 8 1797 198 0 0 0 chr1 158897572 158897594 -38297838 + (CAT)n Simple_repeat Simple_repeat 2 23 0 8 1797 269 268 23 11 chr1 158897614 158897701 -38297731 - PB1D10 SINE Alu -29 88 1 8 1797 462 229 16 78 chr1 158897731 158897859 -38297573 + PB1D7 SINE Alu 1 120 0 8 1797 1297 122 113 75 chr1 158898341 158898607 -38296825 + ORR1A2 LTR MaLR 1 276 -51 8 1797 789 51 205 0 chr1 158898616 158898733 -38296699 + B1_Mus2 SINE Alu 2 142 -5 8 1797 198 0 0 0 chr1 158898738 158898760 -38296672 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 1797 1542 218 25 16 chr1 158898995 158899180 -38296252 + Lx5 LINE L1 6727 6912 -138 8 1797 423 0 0 0 chr1 158899180 158899227 -38296205 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1797 342 0 0 0 chr1 158899227 158899264 -38296168 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1797 1542 218 25 16 chr1 158899264 158899398 -38296034 + Lx5 LINE L1 6913 7049 -1 8 1797 2387 130 173 25 chr1 158900053 158900683 -38294749 - RMER21B LTR ERV1 0 947 33 8 1797 229 91 0 0 chr1 158901214 158901247 -38294185 + PB1D9 SINE Alu 1 33 -87 8 1797 392 260 15 44 chr1 158901906 158902043 -38293389 + CT-rich Low_complexity Low_complexity 6 138 0 8 1797 512 287 90 9 chr1 158902583 158902794 -38292638 + MIRb SINE MIR 2 229 -39 8 1797 335 315 87 27 chr1 158903386 158903536 -38291896 - RSINE1 SINE B4 0 165 7 8 1797 30 45 0 0 chr1 158903579 158903623 -38291809 + AT_rich Low_complexity Low_complexity 1 44 0 8 1797 338 235 91 16 chr1 158903623 158903687 -38291745 - L1MA9 LINE L1 -11 6301 6237 8 1797 396 59 0 0 chr1 158903687 158903738 -38291694 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1797 338 235 91 16 chr1 158903738 158903794 -38291638 - L1MA9 LINE L1 -76 6236 6174 8 1797 1274 243 49 60 chr1 158903831 158904277 -38291155 - L1MA9 LINE L1 -483 5829 5389 8 1797 317 117 376 0 chr1 158904278 158904379 -38291053 - B2_Mm2 SINE B2 -10 185 47 8 1797 1049 90 75 112 chr1 158904427 158904614 -38290818 - B2_Mm2 SINE B2 -14 181 2 8 1797 218 264 151 0 chr1 158904718 158904771 -38290661 - ID4_ SINE ID -2 81 21 8 1797 2319 151 6 109 chr1 158904771 158905141 -38290291 - MTC LTR MaLR 0 421 88 8 1797 1206 48 0 0 chr1 158905141 158905287 -38290145 - B1_Mus2 SINE Alu 0 147 2 8 1797 2319 151 6 109 chr1 158905287 158905385 -38290047 - MTC LTR MaLR -334 87 1 8 1797 486 217 76 15 chr1 158905424 158905555 -38289877 - B1F SINE Alu -1 148 10 8 1797 385 292 35 50 chr1 158905694 158905819 -38289613 - L1MA9 LINE L1 -941 5199 5080 8 1797 405 0 0 0 chr1 158905819 158905864 -38289568 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1797 385 292 35 50 chr1 158905864 158905940 -38289492 - L1MA9 LINE L1 -1061 5079 5001 8 1797 427 214 23 9 chr1 158906010 158906146 -38289286 - L1MA9 LINE L1 -1649 4494 4353 8 1797 488 216 53 26 chr1 158906271 158906385 -38289047 - PB1D10 SINE Alu 0 117 1 9 1797 369 250 0 0 chr1 158906835 158906915 -38288517 + ID4 SINE ID 4 83 0 9 1797 214 178 0 0 chr1 158906993 158907038 -38288394 + T-rich Low_complexity Low_complexity 1 45 0 9 1797 287 267 54 22 chr1 158907737 158907829 -38287603 - PB1D10 SINE Alu -5 112 18 9 1797 261 0 0 0 chr1 158908393 158908422 -38287010 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 9 1797 826 154 0 29 chr1 158908427 158908567 -38286865 - B1_Mur2 SINE Alu -12 137 2 9 1797 185 288 0 111 chr1 158908743 158908860 -38286572 - L2a LINE L2 -83 3343 3240 9 1797 32 0 0 0 chr1 158909232 158909264 -38286168 + AT_rich Low_complexity Low_complexity 1 32 0 9 1797 213 217 0 0 chr1 158909264 158909310 -38286122 + RSINE1 SINE B4 4 49 -116 9 1797 3384 98 28 37 chr1 158909392 158909934 -38285498 + Lx3A LINE L1 6440 6976 -5 9 1797 379 266 99 92 chr1 158910239 158910420 -38285012 + L1MC4 LINE L1 7354 7547 -495 9 1797 471 284 75 0 chr1 158910420 158910554 -38284878 - B1F SINE Alu -1 148 5 9 1797 379 266 99 92 chr1 158910554 158910645 -38284787 + L1MC4 LINE L1 7548 7628 -414 9 1797 347 296 10 0 chr1 158910645 158910743 -38284689 - MER81 DNA AcHobo 0 114 16 9 1797 457 286 173 43 chr1 158910883 158911254 -38284178 - L1MB3 LINE L1 -4 6179 5749 9 1797 270 0 0 0 chr1 158911394 158911424 -38284008 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 1797 216 234 0 0 chr1 158911426 158911473 -38283959 + BC1_Mm scRNA scRNA 42 88 -64 9 1797 269 256 58 0 chr1 158911484 158911570 -38283862 - PB1D10 SINE Alu -9 108 18 9 1797 390 309 111 17 chr1 158911710 158911944 -38283488 + L1MC4 LINE L1 7760 8015 -27 9 1797 207 271 0 0 chr1 158912674 158912722 -38282710 + CT-rich Low_complexity Low_complexity 4 51 0 9 1797 1128 219 24 43 chr1 158914065 158914318 -38281114 - Lx5 LINE L1 -17 7033 6786 9 1797 331 170 28 130 chr1 158914414 158914522 -38280910 + PB1D10 SINE Alu 21 117 0 9 1797 270 176 0 0 chr1 158914540 158914591 -38280841 + GA-rich Low_complexity Low_complexity 2 52 0 9 1797 1445 200 219 87 chr1 158914634 158914677 -38280755 - MT2A LTR ERVL 0 533 462 9 1797 423 0 0 0 chr1 158914677 158914724 -38280708 + (TATG)n Simple_repeat Simple_repeat 4 50 0 9 1797 1445 200 219 87 chr1 158914724 158915151 -38280281 - MT2A LTR ERVL -72 461 2 9 1797 347 278 30 40 chr1 158915516 158915617 -38279815 + PB1D7 SINE Alu 20 119 -1 9 1797 758 136 59 29 chr1 158915639 158915775 -38279657 + B1_Mur4 SINE Alu 1 140 -10 9 1797 360 0 0 0 chr1 158917058 158917098 -38278334 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1797 401 133 13 0 chr1 158917257 158917332 -38278100 + (TCC)n Simple_repeat Simple_repeat 3 78 0 9 1797 1171 55 7 0 chr1 158918242 158918387 -38277045 + B1_Mm SINE Alu 1 146 -1 9 1797 832 81 235 33 chr1 158918607 158918760 -38276672 - B2_Mm2 SINE B2 -10 185 2 9 1797 489 17 0 0 chr1 158918871 158918929 -38276503 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 9 1797 1358 276 53 53 chr1 158918929 158919380 -38276052 - Lx6 LINE L1 -31 7429 6979 9 1797 2474 213 45 39 chr1 158919497 158920093 -38275339 + Lx9 LINE L1 6873 7472 -172 9 1797 23 33 0 0 chr1 158920205 158920235 -38275197 + AT_rich Low_complexity Low_complexity 1 30 0 9 1797 429 20 0 0 chr1 158920528 158920578 -38274854 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1797 414 0 0 0 chr1 158921004 158921050 -38274382 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1797 1193 87 46 56 chr1 158921713 158921908 -38273524 - B2_Mm2 SINE B2 0 195 3 9 1797 356 216 0 10 chr1 158921967 158922065 -38273367 + GA-rich Low_complexity Low_complexity 3 99 0 9 1797 295 385 0 0 chr1 158922129 158922238 -38273194 + G-rich Low_complexity Low_complexity 3 111 0 9 1797 327 265 78 0 chr1 158922248 158922350 -38273082 + B4 SINE B4 1 110 -182 9 1797 238 279 0 0 chr1 158922552 158922613 -38272819 + GA-rich Low_complexity Low_complexity 2 62 0 9 1797 342 0 0 0 chr1 158922783 158922821 -38272611 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1797 198 0 0 0 chr1 158922821 158922842 -38272590 + (GA)n Simple_repeat Simple_repeat 1 22 0 9 1797 264 312 0 0 chr1 158923682 158923839 -38271593 + (CA)n Simple_repeat Simple_repeat 1 157 0 9 1797 3106 123 87 23 chr1 158924158 158924757 -38270675 - RLTR26 LTR ERVK 0 642 6 9 1797 202 68 22 43 chr1 158926124 158926170 -38269262 + (TTTTTG)n Simple_repeat Simple_repeat 5 49 0 9 1797 1136 65 0 0 chr1 158926178 158926317 -38269115 - B1_Mus2 SINE Alu -8 139 1 9 1797 310 305 0 0 chr1 158926541 158926623 -38268809 - B1F SINE Alu -67 82 1 9 1797 264 30 0 0 chr1 158926628 158926661 -38268771 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1797 25 0 0 0 chr1 158928048 158928073 -38267359 + AT_rich Low_complexity Low_complexity 1 25 0 9 1797 227 270 0 0 chr1 158928525 158928588 -38266844 + (CATA)n Simple_repeat Simple_repeat 3 65 0 9 1797 818 300 102 33 chr1 158928588 158928922 -38266510 + L1MC4 LINE L1 6614 6970 -1072 9 1797 380 269 11 0 chr1 158928924 158929017 -38266415 - PB1 SINE Alu -32 95 2 9 1797 521 315 53 103 chr1 158929091 158929392 -38266040 + B4 SINE B4 3 288 -4 9 1797 378 270 190 88 chr1 158929542 158930131 -38265301 + L1MC4 LINE L1 7394 8042 0 9 1797 308 119 17 0 chr1 158930627 158930686 -38264746 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1797 566 252 384 0 chr1 158930699 158930907 -38264525 - B4A SINE B4 -4 288 1 9 1797 234 91 0 0 chr1 158931869 158931902 -38263530 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 9 1797 2265 92 3 6 chr1 158931941 158932450 -38262982 - L1_Mus4 LINE L1 0 6636 6301 9 1797 506 62 0 0 chr1 158932450 158932515 -38262917 + L1_Mus4 LINE L1 6223 6287 -349 9 1797 537 99 0 0 chr1 158932708 158932789 -38262643 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 1797 26 0 0 0 chr1 158932844 158932870 -38262562 + GC_rich Low_complexity Low_complexity 1 26 0 9 1797 433 0 35 0 chr1 158933078 158933135 -38262297 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1797 303 85 0 0 chr1 158933136 158933183 -38262249 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 9 1797 419 297 27 33 chr1 158933831 158933981 -38261451 + MER58B DNA MER1_type 8 156 -185 9 1797 272 275 14 0 chr1 158934081 158934150 -38261282 - B4 SINE B4 -6 286 217 9 1797 1087 91 17 41 chr1 158934157 158934329 -38261103 - B2_Mm2 SINE B2 -14 181 14 9 1797 849 234 109 0 chr1 158934341 158934542 -38260890 - B4 SINE B4 -69 223 1 9 1797 432 323 37 25 chr1 158934553 158934715 -38260717 + MER58B DNA MER1_type 158 321 -20 9 1797 22 0 0 0 chr1 158935211 158935233 -38260199 + AT_rich Low_complexity Low_complexity 1 22 0 9 1797 437 294 34 27 chr1 158935233 158935380 -38260052 + B1F SINE Alu 2 149 0 9 1797 237 173 39 0 chr1 158935441 158935493 -38259939 + GA-rich Low_complexity Low_complexity 3 56 0 9 1797 423 194 0 0 chr1 158935629 158935727 -38259705 + (CA)n Simple_repeat Simple_repeat 1 98 0 9 1797 276 302 12 0 chr1 158935727 158935813 -38259619 - Charlie4z DNA MER1_type -80 87 1 9 1797 348 250 0 0 chr1 158936348 158936424 -38259008 + B3A SINE B2 82 157 -41 9 1797 533 105 0 0 chr1 158936553 158936629 -38258803 + MTC LTR MaLR 6 81 -340 9 1797 1275 256 40 29 chr1 158936653 158936999 -38258433 + Lx6 LINE L1 7085 7434 -26 9 1797 1857 132 92 14 chr1 158937005 158937352 -38258080 + MTC LTR MaLR 48 421 0 9 1797 186 43 0 0 chr1 158937353 158937376 -38258056 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 9 1797 720 297 28 35 chr1 158937712 158937998 -38257434 + B4A SINE B4 5 288 -4 9 1797 212 200 0 0 chr1 158939222 158939267 -38256165 + PB1D9 SINE Alu 68 112 -8 9 1797 616 183 133 0 chr1 158939481 158939601 -38255831 + B1_Mus1 SINE Alu 1 136 -12 9 1797 1187 49 0 30 chr1 158940093 158940261 -38255171 - B2_Mm2 SINE B2 -26 169 7 9 1797 251 257 43 0 chr1 158940336 158940406 -38255026 - MER5A DNA MER1_type -72 117 45 9 1797 645 303 232 18 chr1 158940554 158941217 -38254215 - L1MC4 LINE L1 -194 7848 7044 9 1797 373 304 51 23 chr1 158941612 158941787 -38253645 + B3A SINE B2 3 182 -16 9 1797 330 167 0 0 chr1 158941789 158941849 -38253583 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1797 647 242 0 120 chr1 158941882 158942107 -38253325 + B3A SINE B2 1 198 0 9 1797 428 239 45 27 chr1 158942762 158942874 -38252558 + PB1D7 SINE Alu 5 118 -2 9 1797 225 188 0 0 chr1 158942874 158942922 -38252510 + T-rich Low_complexity Low_complexity 1 48 0 9 1797 1411 126 9 35 chr1 158944644 158944874 -38250558 - URR1B DNA MER1_type -1 224 1 9 1797 280 285 94 34 chr1 158945235 158945384 -38250048 - ID_B1 SINE B4 0 224 67 9 1797 354 23 0 0 chr1 158945959 158946002 -38249430 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1797 259 25 0 48 chr1 158946002 158946044 -38249388 + (CCCCCA)n Simple_repeat Simple_repeat 5 44 0 9 1797 200 358 137 33 chr1 158946113 158946266 -38249166 - MER91A DNA Tip100 -13 183 15 9 1797 264 284 21 15 chr1 158946358 158946485 -38248947 - L1ME2 LINE L1 -19 6145 6017 9 1797 223 341 173 33 chr1 158946583 158946649 -38248783 - L4 LINE RTE -119 1910 1837 9 1797 1186 239 191 8 chr1 158946649 158947000 -38248432 + MTD LTR MaLR 5 419 0 9 1797 223 341 173 33 chr1 158947000 158947239 -38248193 - L4 LINE RTE -193 1836 1563 9 1797 476 361 54 76 chr1 158947280 158947741 -38247691 - L4 LINE RTE -648 1381 931 9 1797 274 260 220 68 chr1 158947864 158948089 -38247343 - LTR79 LTR ERVL -140 387 129 9 1797 287 322 43 32 chr1 158948290 158948430 -38247002 - PB1 SINE Alu 0 149 2 9 1797 977 198 42 33 chr1 158948481 158948695 -38246737 + B3 SINE B2 1 216 0 9 1797 282 299 0 65 chr1 158949172 158949265 -38246167 + RMER13A LTR ERVK 1 87 -773 9 1797 275 260 110 0 chr1 158949275 158949348 -38246084 - ID2 SINE ID 0 83 3 9 1797 1810 161 184 13 chr1 158949703 158950099 -38245333 - RMER16 LTR ERVK 0 533 70 9 1797 399 245 69 35 chr1 158950748 158950892 -38244540 + B1F1 SINE Alu 1 149 0 9 1797 394 275 111 32 chr1 158951370 158951622 -38243810 + B4 SINE B4 2 273 -19 1 1797 339 25 0 0 chr1 158951635 158951675 -38243757 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1797 6382 203 57 28 chr1 158951692 158952523 -38242909 + Lx5 LINE L1 5600 6456 -594 1 1797 182 33 67 0 chr1 158952523 158952553 -38242879 + (TATAA)n Simple_repeat Simple_repeat 2 33 0 1 1797 6382 203 57 28 chr1 158952553 158953112 -38242320 + Lx5 LINE L1 6457 7029 -21 1 1797 227 307 51 34 chr1 158953291 158953409 -38242023 - PB1D7 SINE Alu 0 120 1 1 1797 229 321 87 78 chr1 158954239 158954445 -38240987 - Tigger10 DNA Tigger -295 1548 1341 1 1797 459 0 0 0 chr1 158955276 158955327 -38240105 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1797 240 243 0 0 chr1 158955948 158956022 -38239410 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1797 747 210 6 60 chr1 158956026 158956193 -38239239 - RSINE1 SINE B4 -6 159 2 1 1797 234 0 0 0 chr1 158956725 158956751 -38238681 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1797 994 276 87 8 chr1 158957176 158957442 -38237990 + B4 SINE B4 5 291 -1 1 1797 247 282 153 0 chr1 158957611 158957696 -38237736 + ID_B1 SINE B4 125 222 -2 1 1797 251 241 162 12 chr1 158957622 158957702 -38237730 + B1F SINE Alu 58 149 0 1 1797 708 291 53 19 chr1 158957779 158958042 -38237390 + B4A SINE B4 1 272 -20 1 1797 22 0 0 0 chr1 158958132 158958154 -38237278 + AT_rich Low_complexity Low_complexity 1 22 0 1 1797 213 298 56 125 chr1 158959582 158959754 -38235678 - MIRc SINE MIR -75 193 28 1 1797 216 0 0 0 chr1 158959775 158959799 -38235633 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1797 1174 30 0 0 chr1 158960080 158960215 -38235217 + B1_Mus1 SINE Alu 1 135 -13 1 1797 306 0 0 0 chr1 158960215 158960249 -38235183 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1797 228 35 0 0 chr1 158960250 158960279 -38235153 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1797 518 0 0 16 chr1 158960574 158960637 -38234795 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 1 1797 489 17 0 0 chr1 158961102 158961160 -38234272 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1 1797 480 189 21 35 chr1 158961581 158961797 -38233635 + MYSERV6-int LTR ERVK 7813 7901 -1058 1 1797 219 69 0 0 chr1 158961854 158961883 -38233549 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1797 13128 86 78 2 chr1 158961889 158963887 -38231545 - L1_Mus3 LINE L1 -1 6637 4512 1 1797 713 113 25 34 chr1 158963887 158964006 -38231426 - PB1D9 SINE Alu 0 120 3 1 1797 13128 107 73 1 chr1 158964006 158964684 -38230748 - L1_Mus3 LINE L1 -1372 4511 3741 1 1797 254 283 262 0 chr1 158964757 158964902 -38230530 + MLT1F2 LTR MaLR 22 204 -356 1 1797 1324 258 104 121 chr1 158965050 158965538 -38229894 - L1MCa LINE L1 -5347 1161 635 1 1797 3698 55 25 2 chr1 158965538 158966009 -38229423 - RLTR45 LTR ERVK 0 482 1 1 1797 1324 258 104 121 chr1 158966009 158966436 -38228996 - L1MCa LINE L1 -5874 634 262 1 1797 3615 153 43 19 chr1 158967480 158968107 -38227325 - RLTR26 LTR ERVK 0 642 1 1 1797 441 203 15 49 chr1 158968491 158968608 -38226824 - PB1D10 SINE Alu 0 120 4 1 1797 218 57 57 0 chr1 158969107 158969142 -38226290 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 1 1797 360 0 0 0 chr1 158970205 158970245 -38225187 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1797 1085 111 46 0 chr1 158970762 158970941 -38224491 + B2_Mm2 SINE B2 2 188 -5 1 1797 405 268 40 13 chr1 158970960 158971111 -38224321 + Lx9 LINE L1 7317 7471 -173 1 1797 627 26 0 0 chr1 158971118 158971195 -38224237 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1797 388 256 47 0 chr1 158971456 158971542 -38223890 - B3A SINE B2 -105 93 4 1 1797 3089 23 20 0 chr1 158972376 158972723 -38222709 - IAPEY2_LTR LTR ERVK -3 354 1 1 1797 685 257 79 32 chr1 158972890 158973079 -38222353 + B3A SINE B2 1 198 0 1 1797 229 322 54 22 chr1 158973175 158973191 -38222241 - B4 SINE B4 -49 243 151 1 1797 278 159 189 68 chr1 158973191 158973265 -38222167 - B1F1 SINE Alu 0 149 67 1 1797 27 29 0 0 chr1 158973312 158973346 -38222086 + AT_rich Low_complexity Low_complexity 1 34 0 1 1797 228 312 0 15 chr1 158973612 158973677 -38221755 + CT-rich Low_complexity Low_complexity 3 66 0 1 1797 511 211 0 37 chr1 158973989 158974097 -38221335 - RSINE1 SINE B4 -60 105 2 1 1797 299 298 35 78 chr1 158974860 158975002 -38220430 - MLT1A1 LTR MaLR -237 171 36 1 1797 258 292 10 40 chr1 158975335 158975435 -38219997 - MLT1A1 LTR MaLR -4 404 308 1 1797 1194 243 81 34 chr1 158975672 158976030 -38219402 + MTEa LTR MaLR 1 375 -4 1 1797 258 362 43 40 chr1 158976412 158976593 -38218839 + MIRb SINE MIR 11 194 -74 1 1797 584 217 68 132 chr1 158976795 158977029 -38218403 - ID_B1 SINE B4 -3 221 3 1 1797 224 189 0 0 chr1 158979748 158979785 -38215647 + polypyrimidine Low_complexity Low_complexity 3 39 0 1 1797 795 223 105 15 chr1 158980744 158980944 -38214488 + ID_B1 SINE B4 2 219 -5 1 1797 271 306 164 0 chr1 158981140 158981274 -38214158 - MER20 DNA MER1_type 0 219 64 1 1797 4869 160 52 11 chr1 158981630 158982500 -38212932 + RMER13B LTR ERVK 1 905 -3 1 1797 819 237 75 10 chr1 158982850 158983050 -38212382 - ID_B1 SINE B4 -1 223 11 1 1797 945 208 0 0 chr1 158983180 158983470 -38211962 + (TG)n Simple_repeat Simple_repeat 1 290 0 1 1797 274 337 60 16 chr1 158983746 158983930 -38211502 - L1ME3B LINE L1 -51 6189 5998 1 1797 3307 42 7 5 chr1 158983966 158984370 -38211062 - MTB_Mm LTR MaLR 0 407 3 1 1797 1131 182 51 9 chr1 158984612 158984828 -38210604 - URR1B DNA MER1_type 0 225 1 1 1797 347 330 99 51 chr1 158984836 158985130 -38210302 - L1ME3B LINE L1 -639 5601 5294 1 1797 1336 152 4 55 chr1 158986547 158986754 -38208678 - URR1B DNA MER1_type 0 225 30 1 1797 3131 58 8 5 chr1 158986754 158987153 -38208279 + MTB LTR MaLR 1 400 0 1 1797 1336 152 4 55 chr1 158987153 158987182 -38208250 - URR1B DNA MER1_type -196 29 1 1 1797 269 186 28 28 chr1 158987276 158987348 -38208084 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1797 485 255 82 55 chr1 158987378 158987598 -38207834 + L1M2 LINE L1 4595 4820 -1323 1 1797 252 308 41 8 chr1 158987634 158987755 -38207677 + L1MD2 LINE L1 5804 5928 -431 1 1797 263 229 107 0 chr1 158987763 158987857 -38207575 - PB1 SINE Alu -7 120 13 1 1797 517 270 68 36 chr1 158988080 158988272 -38207160 + L1MD2 LINE L1 6142 6339 -20 1 1797 737 168 41 27 chr1 158988281 158988428 -38207004 + B1_Mur4 SINE Alu 1 149 -1 1 1797 2203 131 79 8 chr1 158988621 158989001 -38206431 + ORR1B1 LTR MaLR 1 380 -14 1 1797 265 98 66 0 chr1 158989544 158989605 -38205827 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 1798 799 148 7 43 chr1 158990347 158990488 -38204944 - B1_Mur1 SINE Alu 0 149 14 1 1798 1175 55 0 0 chr1 158990488 158990633 -38204799 + B1_Mm SINE Alu 2 146 -1 1 1798 309 109 0 0 chr1 158990634 158990680 -38204752 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1798 618 71 0 0 chr1 158990917 158991001 -38204431 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1798 263 204 268 22 chr1 158991059 158991169 -38204263 + MIRb SINE MIR 8 138 -130 1 1798 188 359 62 42 chr1 158991194 158991290 -38204142 + MIR SINE MIR 26 123 -139 1 1798 267 31 0 0 chr1 158991311 158991343 -38204089 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1798 219 218 200 0 chr1 158991576 158991631 -38203801 + ID4 SINE ID 1 66 -17 1 1798 216 156 0 0 chr1 158991642 158991656 -38203776 + polypurine Low_complexity Low_complexity 2 15 0 1 1798 393 39 0 0 chr1 158991656 158991707 -38203725 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1798 216 156 0 0 chr1 158991707 158991737 -38203695 + polypurine Low_complexity Low_complexity 16 45 0 1 1798 454 305 14 51 chr1 158991919 158992057 -38203375 - MER82 DNA MER2_type -5 648 516 1 1798 646 298 104 42 chr1 158992121 158992408 -38203024 - MER82 DNA MER2_type -306 347 43 1 1798 488 317 51 46 chr1 158992490 158992685 -38202747 + MLT1H LTR MaLR 98 293 -256 1 1798 253 292 67 58 chr1 158993139 158993259 -38202173 + MLT1H LTR MaLR 291 411 0 1 1798 1432 27 0 154 chr1 158994369 158994590 -38200842 - B2_Mm1a SINE B2 -6 187 1 1 1798 2549 143 48 2 chr1 158994643 158995043 -38200389 + MTC LTR MaLR 1 418 -3 1 1798 213 282 161 56 chr1 158995774 158995954 -38199478 + MIRc SINE MIR 20 218 -50 1 1798 249 33 0 0 chr1 158996942 158996972 -38198460 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 1798 2105 95 3 69 chr1 158997520 158997869 -38197563 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1798 295 274 50 32 chr1 158998192 158998297 -38197135 + PB1D7 SINE Alu 6 112 -8 1 1798 737 67 10 0 chr1 158998985 158999089 -38196343 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 1 1798 776 164 36 27 chr1 158999160 158999343 -38196089 + B3A SINE B2 2 186 -9 1 1798 489 242 78 84 chr1 159000090 159000257 -38195175 + B4A SINE B4 7 172 -120 1 1798 2148 94 9 51 chr1 159000493 159000829 -38194603 + RLTRETN_Mm LTR ERVK 1 322 0 2 1798 1031 134 0 0 chr1 159001152 159001294 -38194138 - B1_Mur3 SINE Alu -6 143 2 3 1798 309 253 62 12 chr1 159001957 159002037 -38193395 + MLT1A1 LTR MaLR 88 171 -237 4 1798 468 0 0 0 chr1 159002342 159002394 -38193038 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1798 439 228 186 66 chr1 159002405 159002631 -38192801 - RMER15 LTR ERVL -91 484 232 6 1798 191 312 85 51 chr1 159002698 159002787 -38192645 - L3 LINE CR1 -3481 1008 915 7 1798 861 219 61 9 chr1 159002787 159002999 -38192433 - ID_B1 SINE B4 -1 223 1 8 1798 191 312 85 51 chr1 159002999 159003027 -38192405 - L3 LINE CR1 -3575 914 887 7 1798 808 244 75 10 chr1 159003061 159003260 -38192172 - B3 SINE B2 -4 212 1 9 1798 362 238 25 0 chr1 159003736 159003816 -38191616 - ID4 SINE ID 0 83 2 1 1798 1595 166 53 90 chr1 159004013 159004308 -38191124 - MTD LTR MaLR 0 419 112 1 1798 1323 67 72 0 chr1 159004308 159004488 -38190944 + B2_Mm2 SINE B2 2 194 -1 1 1798 1595 166 53 90 chr1 159004488 159004549 -38190883 - MTD LTR MaLR -308 111 76 1 1798 390 57 0 0 chr1 159004788 159004841 -38190591 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1798 192 25 0 91 chr1 159004956 159005000 -38190432 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 1 1798 1246 108 23 0 chr1 159005566 159005742 -38189690 + B2_Mm2 SINE B2 3 182 -13 1 1798 405 123 0 0 chr1 159006120 159006185 -38189247 + (GGA)n Simple_repeat Simple_repeat 1 65 0 1 1798 1228 48 0 7 chr1 159006672 159006820 -38188612 + B1_Mus2 SINE Alu 1 147 0 1 1798 297 71 0 0 chr1 159007699 159007721 -38187711 + (CG)n Simple_repeat Simple_repeat 1 22 0 1 1798 276 30 0 0 chr1 159007721 159007754 -38187678 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1798 297 71 0 0 chr1 159007754 159007773 -38187659 + (CG)n Simple_repeat Simple_repeat 2 20 0 2 1798 532 249 86 12 chr1 159007908 159008071 -38187361 - MIR SINE MIR -23 239 65 2 1798 182 128 0 25 chr1 159008129 159008169 -38187263 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2 1798 622 243 55 7 chr1 159008170 159008315 -38187117 - RSINE1 SINE B4 -11 154 3 2 1798 366 159 69 28 chr1 159009044 159009153 -38186279 - B2_Mm2 SINE B2 -78 120 3 2 1798 307 320 51 118 chr1 159010206 159010401 -38185031 - MamRep38 DNA hAT -24 271 90 2 1798 354 278 37 122 chr1 159010633 159010797 -38184635 + RMER30 DNA MER1_type 8 157 -45 2 1798 860 202 0 36 chr1 159012236 159012444 -38182988 - B3A SINE B2 -5 211 14 2 1798 348 248 159 37 chr1 159012939 159013102 -38182330 - L1MC5 LINE L1 -436 7525 7343 2 1798 24 53 0 0 chr1 159013118 159013156 -38182276 + AT_rich Low_complexity Low_complexity 1 38 0 2 1798 189 0 0 0 chr1 159013190 159013211 -38182221 + (GGGAGA)n Simple_repeat Simple_repeat 3 23 0 3 1798 439 245 63 9 chr1 159013316 159013427 -38182005 + PB1D10 SINE Alu 1 117 0 3 1798 383 171 91 0 chr1 159013801 159013889 -38181543 - MER5A1 DNA MER1_type -32 134 39 3 1798 249 163 20 0 chr1 159013976 159014025 -38181407 - L2b LINE L2 -214 3161 3112 3 1798 305 297 124 24 chr1 159014109 159014278 -38181154 - L1MB7 LINE L1 -19 6165 5980 3 1798 189 107 0 0 chr1 159014298 159014326 -38181106 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 3 1798 702 179 43 0 chr1 159014328 159014445 -38180987 - B1_Mur4 SINE Alu -14 136 15 3 1798 302 197 89 164 chr1 159014359 159014505 -38180927 - MT2B LTR ERVL -344 257 123 3 1798 294 50 0 0 chr1 159015016 159015056 -38180376 + (G)n Simple_repeat Simple_repeat 1 40 0 3 1798 1272 158 18 35 chr1 159015304 159015533 -38179899 + URR1B DNA MER1_type 1 225 0 3 1798 189 0 0 0 chr1 159016669 159016690 -38178742 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 4 1798 220 335 157 7 chr1 159016979 159017132 -38178300 - MER5A DNA MER1_type -10 179 4 4 1798 234 250 83 42 chr1 159017161 159017257 -38178175 + MIR SINE MIR 44 143 -65 4 1798 23 0 0 0 chr1 159017302 159017325 -38178107 + AT_rich Low_complexity Low_complexity 1 23 0 4 1798 214 283 7 142 chr1 159017623 159017771 -38177661 - L2b LINE L2 -313 3062 2935 4 1798 840 146 26 59 chr1 159017776 159017929 -38177503 + B1_Mur4 SINE Alu 3 150 0 4 1798 216 0 0 0 chr1 159017962 159017986 -38177446 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 4 1798 1115 196 14 14 chr1 159018219 159018426 -38177006 - B3 SINE B2 -4 212 6 4 1798 393 58 0 0 chr1 159018469 159018521 -38176911 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1798 509 274 7 88 chr1 159018521 159018657 -38176775 - B1_Mur2 SINE Alu -24 125 1 4 1798 486 0 0 0 chr1 159018722 159018776 -38176656 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 5 1798 901 167 0 0 chr1 159018776 159018914 -38176518 - B1_Mur4 SINE Alu -12 138 1 5 1798 404 182 0 141 chr1 159018799 159018927 -38176505 - MT2B LTR ERVL -337 264 155 5 1798 1090 252 118 46 chr1 159019127 159019763 -38175669 - L1M2 LINE L1 -1938 4205 3524 5 1798 344 213 352 0 chr1 159019781 159019889 -38175543 + B1_Mur2 SINE Alu 2 147 -2 5 1798 730 200 18 53 chr1 159020198 159020425 -38175007 + RMER17C LTR ERVK 1 219 -191 5 1798 1115 56 0 0 chr1 159020429 159020572 -38174860 - B1_Mus1 SINE Alu 0 148 6 5 1798 916 218 47 65 chr1 159020567 159020906 -38174526 + RMER17C LTR ERVK 77 409 -1 5 1798 2650 70 0 3 chr1 159021653 159021981 -38173451 + ORR1A2 LTR MaLR 1 327 0 5 1798 458 320 23 46 chr1 159022536 159022667 -38172765 - RSINE1 SINE B4 0 165 38 5 1798 1621 16 5 45 chr1 159023506 159023706 -38171726 + B2_Mm1a SINE B2 2 193 0 6 1798 678 289 5 16 chr1 159023721 159023896 -38171536 + ID_B1 SINE B4 77 244 -48 6 1798 310 246 14 0 chr1 159024104 159024173 -38171259 + ID4 SINE ID 3 72 -11 6 1798 294 132 113 0 chr1 159025274 159025327 -38170105 + MLT1A0 LTR MaLR 107 165 -200 6 1798 301 230 189 0 chr1 159025445 159025519 -38169913 - MLT1F1 LTR MaLR -266 303 216 6 1798 239 262 136 12 chr1 159025607 159025688 -38169744 - MLT1F1 LTR MaLR -477 92 2 6 1798 395 292 156 29 chr1 159025764 159025937 -38169495 + MLT1D LTR MaLR 3 197 -308 6 1798 1400 67 10 20 chr1 159025950 159026148 -38169284 + MTB LTR MaLR 1 196 -211 6 1798 4886 14 0 0 chr1 159026148 159026723 -38168709 - L1Md_T LINE L1 -176 5707 5133 6 1798 7172 34 4 1 chr1 159026723 159027568 -38167864 + L1Md_T LINE L1 5736 6582 0 6 1798 1833 32 0 0 chr1 159027568 159027784 -38167648 + MTB LTR MaLR 185 400 0 6 1798 370 274 68 38 chr1 159027820 159027953 -38167479 + MLT1D LTR MaLR 253 389 -116 6 1798 498 108 0 0 chr1 159028453 159028527 -38166905 + (CAG)n Simple_repeat Simple_repeat 1 74 0 6 1798 433 233 26 0 chr1 159028542 159028646 -38166786 - B1_Mur4 SINE Alu -35 115 4 6 1798 456 153 0 0 chr1 159028698 159028783 -38166649 + GA-rich Low_complexity Low_complexity 4 88 0 7 1798 228 259 68 85 chr1 159029046 159029164 -38166268 + MamGypLTR1d LTR Gypsy 631 746 -67 7 1798 453 36 0 0 chr1 159029165 159029220 -38166212 + (CAA)n Simple_repeat Simple_repeat 2 56 0 7 1798 345 131 0 0 chr1 159030999 159031060 -38164372 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1798 336 267 146 33 chr1 159032061 159032212 -38163220 - L1ME4a LINE L1 -14 6110 5943 7 1798 332 258 71 19 chr1 159032246 159032400 -38163032 - L1ME4a LINE L1 -273 5851 5690 7 1798 249 57 0 0 chr1 159032577 159032612 -38162820 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1798 493 257 61 0 chr1 159032618 159032766 -38162666 - B3A SINE B2 -41 157 1 7 1798 254 292 82 10 chr1 159033578 159033675 -38161757 + PB1D10 SINE Alu 1 104 -13 7 1798 223 291 0 0 chr1 159033683 159033738 -38161694 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1798 4673 107 45 19 chr1 159035395 159036129 -38159303 + RMER6A LTR ERVK 1 753 -3 7 1798 471 262 56 0 chr1 159036236 159036343 -38159089 + B3 SINE B2 1 113 -103 8 1798 273 119 0 0 chr1 159036381 159036423 -38159009 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1798 668 251 166 0 chr1 159036748 159036959 -38158473 - MER2 DNA MER2_type 0 345 100 8 1798 216 0 0 0 chr1 159037013 159037037 -38158395 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1798 249 292 37 28 chr1 159037080 159037189 -38158243 + L1MC4a LINE L1 7772 7881 -1 8 1798 248 262 95 39 chr1 159038251 159038386 -38157046 + MIRm SINE MIR 41 189 -73 8 1798 2468 72 3 0 chr1 159038998 159039316 -38156116 + ORR1A2 LTR MaLR 1 319 -8 8 1798 315 0 0 0 chr1 159039517 159039552 -38155880 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1798 429 20 0 0 chr1 159040303 159040353 -38155079 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1798 268 274 91 46 chr1 159041094 159041248 -38154184 - MLT1J1 LTR MaLR -264 184 39 8 1798 351 317 40 0 chr1 159041248 159041357 -38154075 + B1F SINE Alu 1 111 -9 9 1798 317 301 0 46 chr1 159041361 159041390 -38154042 + B3 SINE B2 7 35 -181 9 1798 1172 148 11 0 chr1 159041390 159041566 -38153866 + B2_Mm1t SINE B2 2 179 -14 9 1798 372 179 0 14 chr1 159041566 159041644 -38153788 + B2_Mm2 SINE B2 36 109 -107 9 1798 25 31 0 0 chr1 159041656 159041688 -38153744 + AT_rich Low_complexity Low_complexity 1 32 0 9 1798 825 206 87 17 chr1 159041705 159041878 -38153554 + B3 SINE B2 5 189 -27 9 1798 230 185 12 0 chr1 159041886 159041967 -38153465 + (TA)n Simple_repeat Simple_repeat 2 83 0 9 1798 30 59 0 0 chr1 159041968 159042019 -38153413 + AT_rich Low_complexity Low_complexity 1 51 0 9 1798 559 335 81 37 chr1 159042049 159042371 -38153061 + RMER15 LTR ERVL 218 553 -22 9 1798 1500 326 46 19 chr1 159042384 159043054 -38152378 + RMER15-int LTR ERVL 27 714 -4285 9 1798 825 11 0 0 chr1 159043249 159043343 -38152089 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 9 1798 450 94 0 0 chr1 159043337 159043401 -38152031 + (TC)n Simple_repeat Simple_repeat 2 65 0 9 1798 2878 86 5 8 chr1 159043401 159043790 -38151642 - L1Md_F2 LINE L1 0 6582 6195 1 1798 3667 53 24 4 chr1 159043790 159044282 -38151150 + L1Md_F2 LINE L1 5673 6174 -408 1 1798 561 88 0 0 chr1 159044448 159044528 -38150904 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1798 1815 186 40 23 chr1 159045198 159045544 -38149888 + ORR1D1 LTR MaLR 1 352 -22 1 1798 894 286 43 132 chr1 159045560 159045955 -38149477 - MTD LTR MaLR -55 364 5 1 1798 558 240 198 30 chr1 159047119 159047321 -38148111 + RMER15 LTR ERVL 340 575 0 9 1798 665 24 12 0 chr1 159048273 159048356 -38147076 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1798 339 287 74 0 chr1 159049927 159050035 -38145397 + Charlie9 DNA MER1_type 11 126 -2631 1 1798 277 310 100 32 chr1 159050731 159050876 -38144556 + MIR SINE MIR 8 161 -107 1 1798 305 102 17 0 chr1 159051663 159051722 -38143710 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1798 218 350 82 0 chr1 159052892 159052989 -38142443 + L2a LINE L2 3322 3426 0 1 1798 285 343 145 14 chr1 159053658 159053865 -38141567 + MIRb SINE MIR 30 263 -5 1 1798 800 224 0 27 chr1 159053878 159054025 -38141407 + RSINE1 SINE B4 2 144 -21 1 1798 276 30 0 0 chr1 159054445 159054478 -38140954 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1 1798 205 294 213 0 chr1 159054512 159054648 -38140784 - MIRb SINE MIR -35 233 69 1 1798 435 256 141 15 chr1 159055652 159055858 -38139574 - L1MB7 LINE L1 -15 6169 5938 1 1798 519 254 26 0 chr1 159058858 159058972 -38136460 - PB1D7 SINE Alu 0 120 4 1 1798 249 108 0 0 chr1 159058984 159059021 -38136411 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1798 945 155 0 0 chr1 159059032 159059174 -38136258 - B1_Mur3 SINE Alu -7 142 1 1 1798 593 105 0 11 chr1 159060192 159060279 -38135153 + B1_Mus2 SINE Alu 62 147 0 1 1798 2052 114 49 0 chr1 159060504 159060811 -38134621 - ORR1A2 LTR MaLR 0 327 6 1 1798 289 311 80 30 chr1 159061816 159062015 -38133417 + MIRc SINE MIR 44 252 -16 1 1798 250 26 51 0 chr1 159062278 159062317 -38133115 + (TGGGGG)n Simple_repeat Simple_repeat 1 41 0 1 1798 436 290 0 10 chr1 159062669 159062770 -38132662 + B4 SINE B4 2 101 -191 1 1798 427 316 140 16 chr1 159062942 159063135 -38132297 + MIRb SINE MIR 44 260 -8 1 1798 806 148 0 7 chr1 159063345 159063488 -38131944 - MTA_Mm-int LTR MaLR -956 142 1 1 1798 3185 47 26 3 chr1 159063488 159063875 -38131557 - MTA_Mm LTR MaLR 0 396 1 1 1798 204 40 0 0 chr1 159064135 159064160 -38131272 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1798 330 26 0 0 chr1 159064345 159064384 -38131048 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1798 1283 25 22 0 chr1 159064880 159065197 -38130235 + (CACAG)n Simple_repeat Simple_repeat 1 324 0 1 1798 21 0 0 0 chr1 159065585 159065606 -38129826 + AT_rich Low_complexity Low_complexity 1 21 0 1 1798 459 0 0 0 chr1 159066497 159066548 -38128884 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1798 985 122 14 0 chr1 159066810 159066957 -38128475 + B1_Mur4 SINE Alu 2 150 0 1 1798 252 0 0 0 chr1 159067033 159067061 -38128371 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1 1798 243 0 0 0 chr1 159067786 159067813 -38127619 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1798 570 288 14 9 chr1 159068096 159068310 -38127122 - ID_B1 SINE B4 -8 216 2 1 1798 243 61 0 0 chr1 159069414 159069447 -38125985 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1798 291 54 0 0 chr1 159072190 159072227 -38123205 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1798 189 0 0 0 chr1 159072428 159072449 -38122983 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1798 954 137 7 20 chr1 159072460 159072609 -38122823 + B1_Mur4 SINE Alu 2 148 -2 1 1798 1245 35 0 0 chr1 159072609 159072752 -38122680 + B1_Mus2 SINE Alu 1 144 -3 1 1798 352 111 0 69 chr1 159072754 159072841 -38122591 + A-rich Low_complexity Low_complexity 1 81 0 1 1798 548 283 14 21 chr1 159076731 159076872 -38118560 - ID_B1 SINE B4 0 224 85 1 1798 454 278 178 14 chr1 159077119 159077327 -38118105 + MIR SINE MIR 8 249 -13 1 1798 1414 70 43 0 chr1 159078759 159078945 -38116487 + B2_Mm2 SINE B2 2 195 0 1 1798 248 291 58 11 chr1 159079323 159079410 -38116022 + PB1D10 SINE Alu 25 115 -2 1 1798 201 147 0 0 chr1 159079410 159079444 -38115988 + (CCAA)n Simple_repeat Simple_repeat 4 37 0 1 1798 207 0 0 0 chr1 159079833 159079856 -38115576 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 1798 243 306 14 27 chr1 159080440 159080514 -38114918 - ID4 SINE ID -7 76 4 1 1798 271 256 49 0 chr1 159080771 159080853 -38114579 + MIRc SINE MIR 157 242 -26 1 1798 525 250 48 132 chr1 159081686 159081712 -38113720 + B4 SINE B4 73 223 -68 1 1798 759 203 14 7 chr1 159081712 159081851 -38113581 + B1_Mus2 SINE Alu 6 145 -2 1 1798 798 258 20 29 chr1 159082816 159083020 -38112412 - B3 SINE B2 -6 210 9 1 1798 1509 276 207 39 chr1 159084996 159086045 -38109387 + Lx8 LINE L1 6248 7473 0 1 1798 572 221 9 0 chr1 159086051 159086164 -38109268 + PB1D9 SINE Alu 1 114 -6 1 1798 909 144 155 30 chr1 159088293 159088493 -38106939 + URR1A DNA MER1_type 2 226 0 1 1798 234 0 0 0 chr1 159089244 159089270 -38106162 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1798 265 314 90 33 chr1 159089788 159089910 -38105522 - B4 SINE B4 -94 198 70 1 1798 227 239 43 29 chr1 159090103 159090172 -38105260 - ID4 SINE ID -11 72 3 1 1798 285 98 0 0 chr1 159090934 159090975 -38104457 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1798 761 325 142 11 chr1 159091762 159091865 -38103567 - MER44B DNA MER2_type -1 549 432 1 1798 180 0 0 0 chr1 159091865 159091885 -38103547 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1798 1063 314 118 3 chr1 159091885 159092251 -38103181 - Tigger7 DNA MER2_type -119 431 5 1 1798 1400 86 37 0 chr1 159092266 159092453 -38102979 - B2_Mm2 SINE B2 -1 194 1 1 1798 1035 215 51 0 chr1 159092679 159092874 -38102558 + B3 SINE B2 2 206 -10 1 1798 388 91 15 15 chr1 159092976 159093043 -38102389 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1798 292 196 0 0 chr1 159093181 159093232 -38102200 + MurSatRep1 Unknown Unknown 221 271 -1866 1 1798 283 267 50 82 chr1 159093251 159093410 -38102022 - L1MC4 LINE L1 -24 8018 7865 1 1798 23 68 0 0 chr1 159093616 159093660 -38101772 + AT_rich Low_complexity Low_complexity 1 44 0 1 1798 1046 71 36 0 chr1 159095346 159095486 -38099946 - B1_Mus1 SINE Alu -2 146 2 1 1798 255 363 50 27 chr1 159095983 159096157 -38099275 + MIRc SINE MIR 1 187 -81 1 1798 390 265 62 97 chr1 159096859 159097047 -38098385 - B3A SINE B2 -14 179 1 1 1798 707 269 86 0 chr1 159097079 159097276 -38098156 - B3 SINE B2 -1 215 2 1 1798 287 363 15 3 chr1 159097288 159097396 -38098036 - B1F2 SINE Alu -7 110 1 1 1798 963 153 0 0 chr1 159098555 159098699 -38096733 - B1_Mur4 SINE Alu -6 144 1 1 1798 508 321 45 6 chr1 159098809 159098966 -38096466 + RSINE1 SINE B4 3 165 0 1 1798 281 377 75 21 chr1 159098966 159098996 -38096436 + B3A SINE B2 2 198 0 1 1798 236 338 15 0 chr1 159099007 159099075 -38096357 - ID4 SINE ID -14 69 1 1 1798 443 289 22 23 chr1 159100138 159100271 -38095161 + B3A SINE B2 1 143 -73 1 1798 279 0 0 0 chr1 159100271 159100302 -38095130 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1798 323 307 102 57 chr1 159100302 159100344 -38095088 + B3 SINE B2 144 184 -32 1 1798 581 324 20 7 chr1 159100304 159100453 -38094979 - RSINE1 SINE B4 -4 161 11 1 1798 329 245 96 0 chr1 159100716 159100810 -38094622 + MER33 DNA MER1_type 26 128 -196 1 1798 1196 201 3 82 chr1 159100836 159101140 -38094292 + L1VL1 LINE L1 192 471 -5951 1 1798 6810 98 84 5 chr1 159101140 159103273 -38092159 + L1_Mus3 LINE L1 4058 6636 -2 1 1798 226 264 91 85 chr1 159103274 159103473 -38091959 + MER33 DNA MER1_type 125 324 0 1 1798 470 202 93 28 chr1 159103520 159103627 -38091805 + B1F SINE Alu 2 115 -34 1 1798 227 329 103 74 chr1 159104784 159105096 -38090336 + L2c LINE L2 3039 3359 -28 1 1798 384 271 0 86 chr1 159105376 159105481 -38089951 + PB1D10 SINE Alu 1 96 -21 1 1798 299 266 195 35 chr1 159106517 159106630 -38088802 + RSINE1 SINE B4 6 136 -29 1 1798 327 254 0 0 chr1 159106633 159106755 -38088677 + CT-rich Low_complexity Low_complexity 2 123 0 1 1798 215 311 47 37 chr1 159106949 159107056 -38088376 + MIRb SINE MIR 102 209 -59 1 1798 310 260 115 0 chr1 159107079 159107183 -38088249 + PB1D10 SINE Alu 1 116 -1 1 1798 1255 104 16 16 chr1 159108200 159108385 -38087047 + B2_Mm2 SINE B2 2 186 -9 1 1798 27 73 0 0 chr1 159110929 159110984 -38084448 + AT_rich Low_complexity Low_complexity 1 55 0 1 1798 279 0 0 0 chr1 159114060 159114091 -38081341 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1798 755 151 54 20 chr1 159114394 159114543 -38080889 + Lx LINE L1 6420 6573 -81 1 1798 242 365 89 54 chr1 159114615 159114783 -38080649 + LTR78 LTR ERV1 337 510 -794 1 1798 676 286 102 28 chr1 159114822 159115077 -38080355 + B4A SINE B4 2 275 -17 1 1798 288 286 55 35 chr1 159115932 159116077 -38079355 - HAL1 LINE L1 -1084 1423 1276 1 1798 442 309 41 41 chr1 159116409 159116605 -38078827 - HAL1 LINE L1 -1574 933 738 1 1798 562 253 82 56 chr1 159116623 159116891 -38078541 - L1MB7 LINE L1 -10 6174 5900 1 1798 673 210 77 60 chr1 159116988 159117221 -38078211 - L1MB7 LINE L1 -288 5896 5660 1 1798 1132 88 0 0 chr1 159117939 159118086 -38077346 - B1_Mm SINE Alu 0 147 1 1 1798 2993 34 0 0 chr1 159118127 159118479 -38076953 - L1Md_F2 LINE L1 -14 6568 6217 1 1798 767 54 0 0 chr1 159118479 159118571 -38076861 + L1Md_F2 LINE L1 6132 6223 -359 1 1798 968 242 25 34 chr1 159118644 159118883 -38076549 + MTD LTR MaLR 181 417 -2 1 1798 2483 279 103 45 chr1 159118885 159119527 -38075905 + L1_Mur3 LINE L1 2429 3127 -2753 1 1798 444 37 0 0 chr1 159119527 159119581 -38075851 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1798 2483 279 103 45 chr1 159119581 159119728 -38075704 + L1_Mur3 LINE L1 3128 3257 -2623 1 1798 898 205 22 62 chr1 159119728 159119952 -38075480 + B3 SINE B2 2 216 0 2 1798 2483 279 103 45 chr1 159119952 159120618 -38074814 + L1_Mur3 LINE L1 3258 3970 -1910 1 1798 804 262 69 30 chr1 159120628 159120962 -38074470 + L1_Mur3 LINE L1 4178 4524 -1356 1 1798 363 139 174 0 chr1 159121034 159121120 -38074312 - Lx9 LINE L1 -29 7615 7515 2 1798 513 0 0 0 chr1 159121130 159121187 -38074245 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 224 1527 189 104 0 chr1 159121214 159121532 -38073900 + Lx9 LINE L1 6729 7079 -565 2 1799 283 298 75 0 chr1 159121730 159121824 -38073608 + MIR SINE MIR 47 147 -115 2 1799 307 275 120 15 chr1 159121836 159121969 -38073463 + MIRb SINE MIR 99 245 -23 2 1799 412 365 19 39 chr1 159122158 159122366 -38073066 + MIR SINE MIR 1 204 -58 2 1799 538 299 21 35 chr1 159122673 159122815 -38072617 + B1_Mur1 SINE Alu 2 141 -8 2 1799 193 346 67 0 chr1 159123381 159123485 -38071947 - L2a LINE L2 -348 3078 2968 2 1799 588 73 0 0 chr1 159123919 159124001 -38071431 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 2 1799 1325 89 5 21 chr1 159124336 159124530 -38070902 - B2_Mm2 SINE B2 -4 191 1 2 1799 744 124 192 0 chr1 159124654 159124815 -38070617 - URR1A DNA MER1_type -1 225 34 2 1799 27 81 0 0 chr1 159125057 159125119 -38070313 + AT_rich Low_complexity Low_complexity 1 62 0 2 1799 404 256 164 87 chr1 159125194 159125521 -38069911 + L1MCa LINE L1 1072 1426 -5082 2 1799 833 228 69 0 chr1 159125521 159125723 -38069709 - B3 SINE B2 0 216 1 2 1799 404 256 164 87 chr1 159125723 159125899 -38069533 + L1MCa LINE L1 1427 1618 -4890 2 1799 2109 37 4 32 chr1 159125899 159126177 -38069255 - L1Md_F2 LINE L1 -1 6581 6312 2 1799 404 256 164 87 chr1 159126177 159126301 -38069131 + L1MCa LINE L1 1619 1748 -4760 2 1799 458 229 68 30 chr1 159126294 159126528 -38068904 + L1MCa LINE L1 2121 2363 -4145 2 1799 1084 250 84 8 chr1 159126735 159127126 -38068306 + L1MCa LINE L1 2633 3053 -3268 2 1799 246 105 0 0 chr1 159127135 159127173 -38068259 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1799 325 236 191 6 chr1 159127419 159127581 -38067851 + L1MCa LINE L1 3464 3655 -2666 2 1799 286 246 5 151 chr1 159127581 159127716 -38067716 + AluG_3 SINE Alu 22 220 -91 2 1799 481 233 45 14 chr1 159127737 159127891 -38067541 + L1MCa LINE L1 3662 3819 -2502 2 1799 750 259 109 92 chr1 159127926 159128339 -38067093 - L1MC1 LINE L1 -66 6267 5848 2 1799 384 240 48 32 chr1 159128346 159128471 -38066961 - L1MCa LINE L1 -5321 1187 1061 2 1799 2118 143 100 98 chr1 159128495 159129015 -38066417 - RMER1A Other Other -3 1027 507 2 1799 654 218 112 0 chr1 159129015 159129194 -38066238 - L1MCa LINE L1 -5495 1013 815 2 1799 1427 204 256 15 chr1 159129215 159129622 -38065810 - RMER5 LTR ERV1 -9 525 21 2 1799 421 270 96 32 chr1 159129671 159129828 -38065604 - L1MCa LINE L1 -5703 805 639 2 1799 376 250 22 22 chr1 159129828 159129918 -38065514 + RLTR42-int LTR ERVK 566 655 -4867 2 1799 3402 179 86 126 chr1 159129912 159130822 -38064610 + RLTR42-int LTR ERVK 911 1797 -3725 2 1799 1004 150 51 90 chr1 159130822 159131056 -38064376 + URR1B DNA MER1_type 1 225 0 2 1799 3402 179 86 126 chr1 159131056 159131158 -38064274 + RLTR42-int LTR ERVK 1798 1881 -3641 2 1799 207 0 0 0 chr1 159131158 159131181 -38064251 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1799 3402 179 86 126 chr1 159131181 159131246 -38064186 + RLTR42-int LTR ERVK 1882 1946 -3576 2 1799 577 101 99 18 chr1 159131263 159131374 -38064058 - RLTR42-int LTR ERVK -3195 2327 2208 2 1799 1403 153 43 40 chr1 159131369 159131669 -38063763 + RLTR42-int LTR ERVK 3249 3549 -1973 2 1799 822 83 25 16 chr1 159131669 159131791 -38063641 + B1_Mus2 SINE Alu 25 147 0 2 1799 288 0 0 0 chr1 159131823 159131855 -38063577 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1799 1931 131 167 16 chr1 159131856 159132411 -38063021 + RLTR42-int LTR ERVK 3558 4196 -1326 2 1799 6854 35 0 2 chr1 159132557 159133439 -38061993 - L1Md_F2 LINE L1 -660 5922 5044 2 1799 5230 55 3 3 chr1 159133439 159134102 -38061330 + L1Md_F2 LINE L1 5920 6582 0 2 1799 206 167 0 0 chr1 159134195 159134231 -38061201 + L2b LINE L2 3340 3375 0 2 1799 242 286 18 0 chr1 159134334 159134390 -38061042 - MIRb SINE MIR -157 111 55 2 1799 223 320 99 95 chr1 159134413 159134717 -38060715 - L2a LINE L2 -1 3425 3057 2 1799 187 402 68 11 chr1 159135073 159135161 -38060271 - MIR SINE MIR -167 95 3 2 1799 22 0 0 0 chr1 159135420 159135442 -38059990 + AT_rich Low_complexity Low_complexity 1 22 0 2 1799 857 137 26 33 chr1 159136660 159136811 -38058621 + B1_Mur4 SINE Alu 1 150 0 2 1799 314 253 13 0 chr1 159137132 159137207 -38058225 - ID4 SINE ID -3 80 5 2 1799 30 0 0 0 chr1 159137263 159137293 -38058139 + AT_rich Low_complexity Low_complexity 1 30 0 2 1799 609 259 15 0 chr1 159137381 159137512 -38057920 + RSINE1 SINE B4 4 136 -29 2 1799 43 0 0 0 chr1 159137512 159137555 -38057877 + AT_rich Low_complexity Low_complexity 1 43 0 2 1799 404 289 164 31 chr1 159137989 159138225 -38057207 - L1ME1 LINE L1 -2055 5940 5675 2 1799 269 204 227 0 chr1 159138293 159138425 -38057007 - L1MC4a LINE L1 -40 7842 7681 2 1799 512 250 229 16 chr1 159138581 159138764 -38056668 - MLT1D LTR MaLR -46 459 238 2 1799 344 339 0 0 chr1 159138835 159138944 -38056488 - B4A SINE B4 0 292 184 2 1799 211 344 42 31 chr1 159138968 159139064 -38056368 - B4 SINE B4 -153 139 43 2 1799 22574 121 82 85 chr1 159139664 159140716 -38054716 + Lx3B LINE L1 674 1763 -5210 2 1799 1008 82 0 0 chr1 159140716 159140850 -38054582 + B1_Mus1 SINE Alu 15 148 0 2 1799 22574 121 82 85 chr1 159140850 159144011 -38051421 + Lx3B LINE L1 1764 5039 -1934 2 1799 992 110 7 0 chr1 159144011 159144157 -38051275 + B2_Mm1t SINE B2 42 188 -5 2 1799 22574 121 82 85 chr1 159144157 159146019 -38049413 + Lx3B LINE L1 5040 6973 0 2 1799 809 102 17 0 chr1 159146122 159146240 -38049192 - PB1D9 SINE Alu 0 120 1 2 1799 607 246 124 4 chr1 159147257 159147490 -38047942 - L1MC LINE L1 -2138 5744 5484 2 1799 403 336 17 0 chr1 159147638 159147757 -38047675 + B3A SINE B2 51 171 -27 2 1799 396 0 0 0 chr1 159147768 159147812 -38047620 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1799 315 359 7 37 chr1 159148005 159148141 -38047291 - RSINE1 SINE B4 0 165 34 2 1799 402 21 0 0 chr1 159148172 159148219 -38047213 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1799 464 165 0 23 chr1 159149305 159149392 -38046040 - PB1D9 SINE Alu -15 105 21 2 1799 429 335 0 111 chr1 159149441 159149622 -38045810 - RSINE1 SINE B4 -1 164 4 2 1799 881 281 13 18 chr1 159150580 159150808 -38044624 + B4A SINE B4 2 228 -64 2 1799 309 161 18 0 chr1 159150809 159150865 -38044567 + RSINE1 SINE B4 3 59 -106 2 1799 671 391 10 27 chr1 159151166 159151270 -38044162 + B4A SINE B4 1 101 -191 2 1799 3027 42 42 0 chr1 159151270 159151650 -38043782 + MTA_Mm LTR MaLR 1 396 0 2 1799 671 391 10 27 chr1 159151650 159151842 -38043590 + B4A SINE B4 102 292 0 2 1799 293 254 60 0 chr1 159151903 159151970 -38043462 + B4A SINE B4 218 288 -4 2 1799 337 325 58 46 chr1 159151972 159152146 -38043286 - MER45R DNA Tip100 -1404 177 1 2 1799 392 297 55 0 chr1 159152272 159152418 -38043014 - B3A SINE B2 -31 185 24 2 1799 262 237 51 28 chr1 159152651 159152822 -38042610 - Charlie5 DNA MER1_type -105 2519 2345 2 1799 536 286 144 18 chr1 159152994 159153528 -38041904 - L1MB7 LINE L1 -222 5962 5351 2 1799 3426 88 39 0 chr1 159153559 159154046 -38041386 - L1_Mus1 LINE L1 -2 6565 6060 2 1799 21 0 0 0 chr1 159154982 159155003 -38040429 + AT_rich Low_complexity Low_complexity 1 21 0 2 1799 1648 36 0 0 chr1 159155424 159155617 -38039815 + B2_Mm1t SINE B2 1 193 0 2 1799 831 205 90 30 chr1 159156031 159156232 -38039200 - B3 SINE B2 -3 213 1 2 1799 247 347 20 39 chr1 159157368 159157470 -38037962 - MIRm SINE MIR 0 276 177 2 1799 264 161 0 0 chr1 159157514 159157570 -38037862 + Lx8 LINE L1 7416 7471 -2 2 1799 1441 224 121 11 chr1 159158515 159158894 -38036538 - MTC LTR MaLR 0 421 1 2 1799 465 323 36 54 chr1 159159538 159159705 -38035727 + RSINE1 SINE B4 2 165 0 2 1799 24 32 0 0 chr1 159159869 159159900 -38035532 + AT_rich Low_complexity Low_complexity 1 31 0 2 1799 23 0 0 0 chr1 159160128 159160151 -38035281 + AT_rich Low_complexity Low_complexity 1 23 0 2 1799 244 213 0 0 chr1 159160986 159161033 -38034399 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1799 1836 228 36 38 chr1 159162762 159163236 -38032196 + MTC-int LTR MaLR 163 635 -623 2 1799 693 189 120 16 chr1 159163232 159163415 -38032017 + MTC-int LTR MaLR 900 1101 -157 2 1799 785 92 17 0 chr1 159163475 159163594 -38031838 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 2 1799 503 301 72 30 chr1 159163641 159163851 -38031581 - MIR SINE MIR -50 212 1 2 1799 7123 38 30 6 chr1 159164824 159165708 -38029724 - L1Md_F2 LINE L1 -10 6572 5667 2 1799 2923 62 3 3 chr1 159165690 159166077 -38029355 + L1_Mm LINE L1 4051 4437 -1446 2 1799 470 217 32 11 chr1 159166108 159166201 -38029231 + PB1 SINE Alu 31 125 -2 2 1799 6323 77 22 22 chr1 159166809 159167597 -38027835 + Lx LINE L1 5744 6518 -136 2 1799 189 0 0 0 chr1 159167597 159167618 -38027814 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 2 1799 6323 77 22 22 chr1 159167618 159167719 -38027713 + Lx LINE L1 6519 6631 -23 2 1799 1145 61 14 0 chr1 159168149 159168297 -38027135 - B1_Mur4 SINE Alu 0 150 1 2 1799 6545 28 23 0 chr1 159168335 159169111 -38026321 + L1Md_F2 LINE L1 5777 6570 -12 2 1799 324 70 0 0 chr1 159169142 159169185 -38026247 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1799 1069 204 10 29 chr1 159169825 159170032 -38025400 - B3 SINE B2 -13 203 1 2 1799 297 308 55 18 chr1 159170218 159170327 -38025105 + PB1D10 SINE Alu 3 115 -2 2 1799 1715 38 0 0 chr1 159170606 159170816 -38024616 - L1Md_T LINE L1 -1 6581 6372 2 1799 584 206 69 0 chr1 159171757 159171888 -38023544 + B1F1 SINE Alu 1 140 -9 2 1799 266 275 43 0 chr1 159172306 159172375 -38023057 + polypurine Low_complexity Low_complexity 4 75 0 2 1799 291 179 0 0 chr1 159174625 159174692 -38020740 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1799 283 298 62 86 chr1 159175369 159175524 -38019908 - L2a LINE L2 -4 3422 3268 2 1799 1630 22 0 0 chr1 159175524 159175709 -38019723 + B2_Mm1a SINE B2 2 186 -7 2 1799 283 298 62 86 chr1 159175709 159175762 -38019670 - L2a LINE L2 -159 3267 3219 2 1799 238 266 98 27 chr1 159176080 159176192 -38019240 - L1MB8 LINE L1 -135 6043 5924 2 1799 22 35 0 0 chr1 159176386 159176415 -38019017 + AT_rich Low_complexity Low_complexity 1 29 0 2 1799 355 295 82 39 chr1 159176640 159176919 -38018513 - L1MC4 LINE L1 -4 8038 7748 2 1799 652 222 173 17 chr1 159177012 159177191 -38018241 + B3 SINE B2 1 207 -9 2 1799 230 225 0 0 chr1 159177240 159177280 -38018152 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1799 310 286 13 13 chr1 159177520 159177598 -38017834 - RSINE1 SINE B4 -5 160 83 2 1799 24 0 0 0 chr1 159178041 159178065 -38017367 + AT_rich Low_complexity Low_complexity 1 24 0 2 1799 571 232 87 10 chr1 159179045 159179241 -38016191 + L1M3 LINE L1 5162 5372 -768 2 1799 615 303 95 8 chr1 159179243 159179506 -38015926 + B4A SINE B4 2 287 -5 3 1799 269 217 14 0 chr1 159179667 159179736 -38015696 + L1M3 LINE L1 5370 5439 -852 2 1799 395 352 118 93 chr1 159179817 159180142 -38015290 + MLT1E1A LTR MaLR 269 589 -38 3 1799 491 282 40 17 chr1 159180340 159180513 -38014919 - L1M5 LINE L1 -350 5823 5647 3 1799 21 0 0 0 chr1 159181018 159181039 -38014393 + AT_rich Low_complexity Low_complexity 1 21 0 3 1799 2144 63 127 0 chr1 159181067 159181382 -38014050 + IAPEY2_LTR LTR ERVK 1 355 -2 3 1799 484 149 19 9 chr1 159181940 159182048 -38013384 + (TATG)n Simple_repeat Simple_repeat 2 110 0 3 1799 8107 42 11 2 chr1 159182226 159183319 -38012113 - L1Md_F2 LINE L1 0 6582 5480 3 1799 272 156 0 0 chr1 159184646 159184691 -38010741 + B2_Mm2 SINE B2 3 47 -148 3 1799 21 0 0 0 chr1 159187955 159187976 -38007456 + AT_rich Low_complexity Low_complexity 1 21 0 3 1799 240 260 91 30 chr1 159188446 159188545 -38006887 + L3 LINE CR1 4229 4333 -156 3 1799 3692 30 2 0 chr1 159189814 159190255 -38005177 + L1Md_T LINE L1 5145 5586 -297 3 1799 8439 29 0 0 chr1 159190255 159191239 -38004193 + L1Md_T LINE L1 5587 6570 -12 3 1799 1100 61 0 0 chr1 159191239 159191378 -38004054 + L1_Mm LINE L1 5448 5614 -719 3 1799 8136 38 5 18 chr1 159191378 159192387 -38003045 + L1Md_F2 LINE L1 5587 6582 0 3 1799 605 235 0 26 chr1 159192387 159192412 -38003020 + L1_Mm LINE L1 5615 5637 -696 3 1799 219 36 0 0 chr1 159192793 159192821 -38002611 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1799 21 0 0 0 chr1 159193014 159193035 -38002397 + AT_rich Low_complexity Low_complexity 1 21 0 3 1799 870 176 0 26 chr1 159193859 159194011 -38001421 + B1_Mur3 SINE Alu 1 148 -1 3 1799 512 289 292 5 chr1 159194425 159194637 -38000795 + B4 SINE B4 2 274 -18 3 1799 22 35 0 0 chr1 159194660 159194689 -38000743 + AT_rich Low_complexity Low_complexity 1 29 0 3 1799 592 26 0 0 chr1 159194763 159194839 -38000593 + B1_Mus2 SINE Alu 72 147 0 3 1799 236 67 67 0 chr1 159194843 159194888 -38000544 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1799 521 66 26 0 chr1 159195511 159195587 -37999845 - B1_Mur4 SINE Alu 0 150 73 3 1799 23 54 0 0 chr1 159196072 159196109 -37999323 + AT_rich Low_complexity Low_complexity 1 37 0 3 1799 4204 196 91 85 chr1 159196281 159197479 -37997953 - Lx7 LINE L1 0 7696 6492 3 1799 243 0 0 0 chr1 159197487 159197514 -37997918 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1799 22 0 0 0 chr1 159198875 159198897 -37996535 + AT_rich Low_complexity Low_complexity 1 22 0 3 1799 34 42 0 0 chr1 159198961 159199009 -37996423 + AT_rich Low_complexity Low_complexity 1 48 0 3 1799 400 139 12 12 chr1 159199040 159199120 -37996312 + CT-rich Low_complexity Low_complexity 3 82 0 3 1799 638 264 5 94 chr1 159199129 159199318 -37996114 - ID_B1 SINE B4 -44 248 81 3 1799 858 91 0 0 chr1 159199372 159199493 -37995939 + (TTTC)n Simple_repeat Simple_repeat 3 123 0 3 1799 732 37 250 0 chr1 159199494 159199602 -37995830 - B1_Mm SINE Alu -12 135 1 3 1799 1009 238 9 9 chr1 159200289 159200501 -37994931 - B3 SINE B2 -4 212 1 3 1799 8792 86 12 2 chr1 159200537 159202119 -37993313 + L1_Mus2 LINE L1 4631 6230 -336 3 1799 1126 56 28 0 chr1 159202452 159202596 -37992836 + B1_Mus1 SINE Alu 1 148 0 3 1799 469 219 29 146 chr1 159202682 159202853 -37992579 - B3 SINE B2 -24 192 42 3 1799 283 325 101 44 chr1 159202955 159203113 -37992319 + MIR SINE MIR 8 174 -88 3 1799 288 0 0 0 chr1 159203988 159204020 -37991412 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1799 1122 89 6 0 chr1 159204021 159204178 -37991254 - B2_Mm2 SINE B2 -34 161 4 3 1799 217 305 20 59 chr1 159204658 159204759 -37990673 + RSINE1 SINE B4 68 164 -1 3 1799 772 215 0 7 chr1 159206762 159206912 -37988520 - B1_Mur2 SINE Alu 0 149 1 3 1799 483 229 101 34 chr1 159207735 159207884 -37987548 - RSINE1 SINE B4 -5 160 2 3 1799 451 219 10 0 chr1 159208007 159208103 -37987329 + RMER1A Other Other 929 1025 -5 3 1799 213 39 0 0 chr1 159208214 159208240 -37987192 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 1799 495 283 67 0 chr1 159208268 159208388 -37987044 - ID_B1 SINE B4 -91 133 6 3 1799 805 294 97 3 chr1 159208398 159208759 -37986673 - L1MA6 LINE L1 0 6300 5906 3 1799 482 267 82 26 chr1 159208962 159209231 -37986201 + L1MA6 LINE L1 6014 6297 -3 3 1799 4449 130 20 19 chr1 159209280 159210035 -37985397 - RMER6A LTR ERVK 0 756 1 3 1799 268 167 96 14 chr1 159211096 159211169 -37984263 - MER91B DNA Tip100 -62 128 50 3 1799 777 239 88 5 chr1 159211704 159211897 -37983535 - B3 SINE B2 -7 209 1 3 1799 737 216 155 28 chr1 159212027 159212208 -37983224 + B3 SINE B2 1 204 -12 3 1799 212 372 13 0 chr1 159212297 159212375 -37983057 + L2a LINE L2 2691 2769 -650 3 1799 213 375 62 21 chr1 159212621 159212861 -37982571 + L2a LINE L2 3171 3420 -6 3 1799 23 0 0 0 chr1 159213059 159213082 -37982350 + AT_rich Low_complexity Low_complexity 1 23 0 3 1799 406 322 36 75 chr1 159213421 159213673 -37981759 + L2 LINE L2 1860 2101 -1318 3 1799 463 269 79 35 chr1 159213748 159213975 -37981457 - L1ME3A LINE L1 -21 6152 5916 3 1799 232 322 94 41 chr1 159214142 159214408 -37981024 - L1ME3A LINE L1 -968 5178 4899 3 1799 695 226 7 20 chr1 159214568 159214581 -37980851 - B1_Mur1 SINE Alu 0 149 139 3 1799 213 39 0 0 chr1 159214581 159214607 -37980825 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1799 695 226 7 20 chr1 159214607 159214742 -37980690 - B1_Mur1 SINE Alu -11 138 3 3 1799 249 274 78 52 chr1 159216336 159216413 -37979019 - ID4_ SINE ID -2 81 3 3 1799 439 223 107 8 chr1 159217343 159217474 -37977958 + Tigger7 DNA MER2_type 2305 2448 -43 3 1799 557 251 84 39 chr1 159217915 159218093 -37977339 - Tigger7 DNA MER2_type -1 2490 2305 3 1799 1398 89 0 5 chr1 159218169 159218362 -37977070 - B2_Mm2 SINE B2 -3 192 1 3 1799 375 262 47 47 chr1 159218364 159218492 -37976940 - Tigger7 DNA MER2_type -2080 411 284 3 1799 318 343 9 0 chr1 159218528 159218633 -37976799 - Tigger7 DNA MER2_type -2369 122 17 3 1799 895 132 151 0 chr1 159218672 159218838 -37976594 - B2_Mm2 SINE B2 -3 192 2 3 1799 1203 47 0 0 chr1 159218955 159219103 -37976329 + B1_Mus1 SINE Alu 1 148 0 3 1799 22 35 0 0 chr1 159220365 159220394 -37975038 + AT_rich Low_complexity Low_complexity 1 29 0 3 1799 757 274 10 59 chr1 159220396 159220598 -37974834 - B3A SINE B2 -6 192 1 3 1799 215 253 242 0 chr1 159221222 159221317 -37974115 + MER5A DNA MER1_type 72 189 0 3 1799 203 261 0 0 chr1 159221375 159221421 -37974011 + MER5B DNA MER1_type 2 47 -131 3 1799 423 0 0 0 chr1 159221911 159221958 -37973474 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1799 206 293 0 17 chr1 159222108 159222167 -37973265 + L2 LINE L2 2804 2861 -558 3 1799 279 0 0 0 chr1 159222835 159222866 -37972566 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1799 590 271 77 33 chr1 159223279 159223462 -37971970 - B3A SINE B2 -7 191 1 3 1799 746 229 147 11 chr1 159223787 159223977 -37971455 + B3 SINE B2 1 216 0 3 1799 366 42 0 0 chr1 159224546 159224594 -37970838 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1799 1585 129 107 40 chr1 159225031 159225329 -37970103 + ORR1A3 LTR MaLR 1 318 -8 3 1799 340 252 54 36 chr1 159225709 159225820 -37969612 - L1MB5 LINE L1 0 6174 6062 3 1799 207 0 0 0 chr1 159226475 159226498 -37968934 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1799 306 335 38 20 chr1 159226536 159226659 -37968773 + B1F2 SINE Alu 2 125 -2 3 1799 243 204 0 0 chr1 159226681 159226735 -37968697 + CT-rich Low_complexity Low_complexity 3 56 0 3 1799 213 175 0 0 chr1 159227323 159227363 -37968069 + CT-rich Low_complexity Low_complexity 3 42 0 3 1799 251 231 12 60 chr1 159227737 159227820 -37967612 + L1_Mur3 LINE L1 5701 5779 -101 3 1799 198 401 23 30 chr1 159227894 159228025 -37967407 - L2 LINE L2 -3061 358 229 3 1799 246 303 15 0 chr1 159228031 159228097 -37967335 + ID4_ SINE ID 2 68 -15 3 1799 1888 157 69 11 chr1 159228205 159228552 -37966880 + ORR1B2 LTR MaLR 1 367 0 3 1799 1784 188 116 8 chr1 159228592 159228963 -37966469 - MTD LTR MaLR -8 411 1 3 1799 756 86 0 0 chr1 159230852 159230957 -37964475 + (TC)n Simple_repeat Simple_repeat 1 105 0 3 1799 716 219 0 14 chr1 159230959 159231098 -37964334 - B1_Mus1 SINE Alu -11 137 1 3 1799 795 245 105 59 chr1 159232313 159232703 -37962729 - Charlie1a DNA MER1_type -138 1317 910 3 1799 774 164 105 0 chr1 159232752 159232904 -37962528 + Lx4A LINE L1 6884 7051 -7 3 1799 782 148 0 14 chr1 159232908 159233052 -37962380 + (CATA)n Simple_repeat Simple_repeat 2 143 0 3 1799 827 142 136 0 chr1 159233052 159233214 -37962218 + B2_Mm2 SINE B2 3 186 -9 3 1799 939 265 41 56 chr1 159233226 159233618 -37961814 - Charlie1a DNA MER1_type -561 894 509 3 1799 324 279 126 21 chr1 159234009 159234152 -37961280 + RMER15 LTR ERVL 403 560 -15 3 1799 1165 111 21 27 chr1 159234699 159234885 -37960547 - B2_Mm2 SINE B2 -10 185 1 3 1799 21 0 0 0 chr1 159235009 159235030 -37960402 + AT_rich Low_complexity Low_complexity 1 21 0 3 1799 286 301 27 14 chr1 159235067 159235141 -37960291 - ID SINE ID -148 76 2 3 1799 701 231 56 0 chr1 159235419 159235562 -37959870 - RSINE1 SINE B4 -12 153 3 3 1799 480 346 60 0 chr1 159235562 159235747 -37959685 - B4A SINE B4 -62 230 35 3 1799 31 44 0 0 chr1 159235773 159235818 -37959614 + AT_rich Low_complexity Low_complexity 1 45 0 3 1799 316 305 0 0 chr1 159235900 159235982 -37959450 - B3A SINE B2 -116 82 1 3 1799 24 0 0 0 chr1 159235987 159236011 -37959421 + AT_rich Low_complexity Low_complexity 1 24 0 3 1799 481 259 23 20 chr1 159236436 159236660 -37958772 + GA-rich Low_complexity Low_complexity 1 224 0 3 1799 188 213 64 0 chr1 159238039 159238086 -37957346 - L3 LINE CR1 -1644 2845 2796 3 1799 319 252 36 64 chr1 159238656 159238766 -37956666 + PB1D7 SINE Alu 1 107 -13 3 1799 21 57 0 0 chr1 159238793 159238828 -37956604 + AT_rich Low_complexity Low_complexity 1 35 0 4 1799 351 176 15 0 chr1 159239098 159239166 -37956266 + ORR1D1 LTR MaLR 5 73 -301 4 1799 250 325 139 16 chr1 159239171 159239293 -37956139 + MER77 LTR ERVL 448 584 -23 4 1799 727 46 19 0 chr1 159239489 159239597 -37955835 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1799 266 342 55 92 chr1 159239720 159239741 -37955691 + B4 SINE B4 63 213 -79 4 1799 638 254 7 14 chr1 159239741 159239876 -37955556 + B1_Mur3 SINE Alu 2 136 -13 4 1799 261 0 0 0 chr1 159239876 159239905 -37955527 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 4 1799 450 176 0 0 chr1 159240454 159240539 -37954893 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 1799 287 286 58 35 chr1 159240551 159240638 -37954794 + PB1D7 SINE Alu 27 115 -5 4 1799 1623 131 115 155 chr1 159240643 159241042 -37954390 - ORR1C2 LTR MaLR -1 383 1 4 1799 210 337 99 52 chr1 159241475 159241625 -37953807 + MIRb SINE MIR 8 160 -108 4 1799 1972 100 9 53 chr1 159241625 159241962 -37953470 + RLTRETN_Mm LTR ERVK 1 322 0 4 1799 210 333 103 28 chr1 159241962 159242042 -37953390 + MIRb SINE MIR 161 247 -21 4 1799 204 49 98 0 chr1 159242278 159242319 -37953113 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1799 528 16 0 0 chr1 159242735 159242796 -37952636 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1799 651 248 137 0 chr1 159243461 159243622 -37951810 + B3 SINE B2 9 191 -25 4 1799 238 286 23 23 chr1 159243744 159243830 -37951602 + A-rich Low_complexity Low_complexity 2 87 0 4 1799 180 0 0 0 chr1 159244259 159244279 -37951153 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1799 267 31 0 0 chr1 159244279 159244310 -37951122 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1799 833 231 197 8 chr1 159244664 159244705 -37950727 + RCHARR1 DNA MER1_type 1 45 -929 4 1799 270 0 0 0 chr1 159244705 159244735 -37950697 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1799 833 231 197 8 chr1 159244735 159244937 -37950495 + RCHARR1 DNA MER1_type 46 289 -685 4 1799 731 174 109 30 chr1 159244940 159245142 -37950290 + RCHARR1 DNA MER1_type 750 967 -7 4 1799 303 219 94 0 chr1 159245524 159245588 -37949844 + ID4_ SINE ID 7 76 -7 4 1799 269 187 13 0 chr1 159245631 159245706 -37949726 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1799 488 311 22 22 chr1 159245706 159245841 -37949591 + B3 SINE B2 71 205 -11 4 1799 362 301 168 67 chr1 159246502 159246918 -37948514 - Tigger13a DNA MER2_type -133 638 181 4 1799 285 29 0 0 chr1 159247720 159247754 -37947678 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1799 692 323 69 4 chr1 159247791 159248024 -37947408 - B4A SINE B4 -44 248 1 4 1799 435 38 0 0 chr1 159249317 159249370 -37946062 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1799 1002 226 43 14 chr1 159249600 159249807 -37945625 + B3 SINE B2 1 213 -3 4 1799 591 15 0 0 chr1 159250125 159250193 -37945239 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1799 452 123 0 0 chr1 159250482 159250547 -37944885 - L1MC1 LINE L1 -18 6315 6251 4 1799 1242 151 29 0 chr1 159251664 159251869 -37943563 - URR1B DNA MER1_type 0 225 15 4 1800 292 292 125 44 chr1 159252648 159252784 -37942648 - RMER30 DNA MER1_type -55 147 1 4 1800 381 95 0 0 chr1 159253051 159253114 -37942318 + (A)n Simple_repeat Simple_repeat 1 63 0 4 1800 2939 258 84 32 chr1 159253114 159254054 -37941378 + Lx9 LINE L1 6418 7406 -238 4 1800 7079 169 41 6 chr1 159254046 159255912 -37939520 + Lx5 LINE L1 5100 7039 -11 4 1800 450 0 0 0 chr1 159256056 159256106 -37939326 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4 1800 24 77 0 0 chr1 159257306 159257358 -37938074 + AT_rich Low_complexity Low_complexity 1 52 0 4 1800 276 30 0 0 chr1 159258504 159258537 -37936895 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1800 247 290 32 16 chr1 159258865 159258928 -37936504 - ID4_ SINE ID -19 64 1 4 1800 220 214 0 41 chr1 159259577 159259650 -37935782 + T-rich Low_complexity Low_complexity 2 71 0 4 1800 1076 69 0 20 chr1 159259655 159259802 -37935630 - B1_Mus1 SINE Alu 0 148 5 4 1800 302 339 39 0 chr1 159260271 159260377 -37935055 + B1F1 SINE Alu 1 107 -10 4 1800 2444 97 34 80 chr1 159260413 159260850 -37934582 - L1_Mus2 LINE L1 -2 6564 6148 4 1800 501 282 96 41 chr1 159260932 159261224 -37934208 + L1ME2 LINE L1 5596 5903 -261 4 1800 245 207 17 17 chr1 159261281 159261340 -37934092 + GA-rich Low_complexity Low_complexity 4 62 0 4 1800 26 50 0 0 chr1 159261391 159261431 -37934001 + AT_rich Low_complexity Low_complexity 1 40 0 4 1800 278 319 19 38 chr1 159261711 159261822 -37933610 + BC1_Mm scRNA scRNA 2 111 -41 4 1800 821 200 211 0 chr1 159262053 159262228 -37933204 + B3 SINE B2 2 213 -3 4 1800 29 28 0 0 chr1 159262332 159262368 -37933064 + AT_rich Low_complexity Low_complexity 1 36 0 4 1800 384 209 149 85 chr1 159262430 159262571 -37932861 + B1_Mur4 SINE Alu 1 150 0 4 1800 376 0 74 0 chr1 159263324 159263378 -37932054 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 4 1800 43 0 0 0 chr1 159263510 159263553 -37931879 + AT_rich Low_complexity Low_complexity 1 43 0 4 1800 510 17 0 0 chr1 159264201 159264260 -37931172 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 4 1800 2006 106 35 6 chr1 159264289 159264604 -37930828 + ORR1A2 LTR MaLR 4 327 0 4 1800 1796 253 64 13 chr1 159265226 159265770 -37929662 + L1MC1 LINE L1 5599 6170 -163 4 1800 233 287 114 11 chr1 159265896 159265912 -37929520 - ID_B1 SINE B4 -125 99 3 4 1800 238 278 111 0 chr1 159265912 159265984 -37929448 - ID4 SINE ID -1 82 3 4 1800 1593 42 0 0 chr1 159266527 159266719 -37928713 - B2_Mm1t SINE B2 -1 192 1 4 1800 582 15 0 0 chr1 159266934 159267001 -37928431 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1800 634 163 23 68 chr1 159267008 159267140 -37928292 - Lx9 LINE L1 -162 7482 7357 4 1800 4381 200 49 76 chr1 159267211 159268299 -37927133 + Lx7 LINE L1 6639 7696 0 4 1800 1324 184 78 11 chr1 159268357 159268626 -37926806 + L1_Rod LINE L1 3789 4075 -1772 4 1800 837 242 63 8 chr1 159268640 159268894 -37926538 - L1_Rod LINE L1 -2356 3491 3224 4 1800 873 168 26 36 chr1 159268899 159269091 -37926341 + L1_Rod LINE L1 4082 4271 -1576 4 1800 194 374 62 35 chr1 159270013 159270157 -37925275 - L2 LINE L2 -550 2869 2722 4 1800 982 138 0 0 chr1 159270277 159270415 -37925017 + B1_Mus2 SINE Alu 1 138 -9 4 1800 285 118 0 0 chr1 159270430 159270481 -37924951 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 4 1800 28 29 0 0 chr1 159270857 159270892 -37924540 + AT_rich Low_complexity Low_complexity 1 35 0 4 1800 203 0 37 0 chr1 159271187 159271214 -37924218 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1800 1124 56 14 7 chr1 159271875 159272020 -37923412 + B1_Mm SINE Alu 2 147 0 4 1800 25 31 0 0 chr1 159272519 159272551 -37922881 + AT_rich Low_complexity Low_complexity 1 32 0 4 1800 327 221 25 119 chr1 159273030 159273148 -37922284 + MT2B LTR ERVL 152 258 -343 4 1800 720 203 7 7 chr1 159273052 159273191 -37922241 + B1_Mus2 SINE Alu 9 147 0 4 1800 789 250 59 30 chr1 159273288 159273490 -37921942 - B4A SINE B4 -70 222 15 4 1800 204 93 35 53 chr1 159274958 159275015 -37920417 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1800 7008 82 9 1 chr1 159275215 159276167 -37919265 + L1_Mus4 LINE L1 5675 6634 -2 4 1800 349 256 68 93 chr1 159276172 159276407 -37919025 + MER5C1 DNA MER1_type 1 226 -37 4 1800 216 111 0 0 chr1 159276749 159276785 -37918647 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1800 2298 140 61 8 chr1 159276827 159277223 -37918209 - MTC LTR MaLR 0 421 5 4 1800 189 0 0 0 chr1 159277254 159277275 -37918157 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1800 627 14 0 0 chr1 159277275 159277346 -37918086 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1800 207 0 0 0 chr1 159277446 159277469 -37917963 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1800 273 75 0 0 chr1 159277989 159278029 -37917403 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1800 34 42 0 0 chr1 159278086 159278134 -37917298 + AT_rich Low_complexity Low_complexity 1 48 0 4 1800 591 219 218 46 chr1 159278168 159278517 -37916915 + L1MC3 LINE L1 7340 7748 -37 4 1800 24 0 0 0 chr1 159278520 159278544 -37916888 + AT_rich Low_complexity Low_complexity 1 24 0 4 1800 22 0 0 0 chr1 159278850 159278872 -37916560 + AT_rich Low_complexity Low_complexity 1 22 0 4 1800 1458 171 99 14 chr1 159278894 159279239 -37916193 - ORR1D1 LTR MaLR 0 374 1 4 1800 8070 54 4 1 chr1 159279461 159280470 -37914962 + L1Md_F3 LINE L1 4575 5586 -297 4 1800 8064 33 14 1 chr1 159280470 159281441 -37913991 + L1Md_F3 LINE L1 5587 6570 -14 4 1800 778 179 7 14 chr1 159281454 159281596 -37913836 + B1_Mur3 SINE Alu 2 142 -7 4 1800 292 230 22 33 chr1 159282185 159282275 -37913157 + (CATA)n Simple_repeat Simple_repeat 1 89 0 4 1800 193 163 20 20 chr1 159282288 159282338 -37913094 + GA-rich Low_complexity Low_complexity 3 52 0 4 1800 565 118 12 0 chr1 159283024 159283109 -37912323 - URR1B DNA MER1_type -89 136 51 4 1800 304 253 52 21 chr1 159283109 159283121 -37912311 + CYRA11_Mm Unknown Y-chromosome 262 361 -256 4 1800 266 50 0 24 chr1 159283144 159283185 -37912247 + (TTTTC)n Simple_repeat Simple_repeat 4 43 0 4 1800 358 294 111 0 chr1 159283322 159283502 -37911930 + MER20B DNA MER1_type 196 395 -388 4 1800 2002 198 28 76 chr1 159283939 159284470 -37910962 + RMER1B Other Other 92 891 -175 4 1800 510 230 28 62 chr1 159284613 159284757 -37910675 + RMER1B Other Other 928 1066 0 4 1800 3278 101 48 8 chr1 159285518 159286036 -37909396 - Lx2 LINE L1 -846 6151 5613 4 1800 5610 104 12 12 chr1 159286037 159286896 -37908536 + Lx2 LINE L1 6138 6996 -1 4 1800 1014 159 78 46 chr1 159287055 159287273 -37908159 - URR1B DNA MER1_type 0 225 1 4 1800 829 161 35 14 chr1 159287474 159287619 -37907813 + B1_Mus1 SINE Alu 1 148 0 4 1800 953 178 22 84 chr1 159287686 159287868 -37907564 + B3 SINE B2 2 182 -34 4 1800 183 42 0 0 chr1 159287868 159287892 -37907540 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1800 953 178 22 84 chr1 159287892 159287936 -37907496 + B3 SINE B2 183 214 -2 4 1800 387 141 0 0 chr1 159289157 159289221 -37906211 + (TATG)n Simple_repeat Simple_repeat 1 64 0 5 1800 996 213 11 0 chr1 159289222 159289410 -37906022 + B3 SINE B2 27 216 0 5 1800 2074 254 27 51 chr1 159289436 159290022 -37905410 + Lx8 LINE L1 6707 7278 -195 5 1800 932 161 82 68 chr1 159290359 159290566 -37904866 - ORR1C2 LTR MaLR 0 384 175 5 1800 354 237 0 0 chr1 159290573 159290670 -37904762 + GA-rich Low_complexity Low_complexity 5 101 0 5 1800 927 203 16 6 chr1 159290687 159290870 -37904562 - ORR1C2 LTR MaLR -199 185 1 5 1800 264 30 0 0 chr1 159291217 159291250 -37904182 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1800 372 340 33 26 chr1 159291253 159291404 -37904028 - RSINE1 SINE B4 -11 154 3 5 1800 240 100 0 0 chr1 159291629 159291669 -37903763 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1800 414 0 0 0 chr1 159291845 159291891 -37903541 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1800 624 335 71 0 chr1 159292525 159292695 -37902737 + B3A SINE B2 1 182 -16 5 1800 515 174 0 9 chr1 159292705 159292821 -37902611 + (TA)n Simple_repeat Simple_repeat 2 116 0 5 1800 189 0 0 0 chr1 159293298 159293319 -37902113 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1800 301 225 155 0 chr1 159293410 159293481 -37901951 + ID_B1 SINE B4 81 162 -62 5 1800 303 282 0 25 chr1 159293481 159293561 -37901871 + RSINE1 SINE B4 88 165 0 5 1800 22 0 0 0 chr1 159293568 159293590 -37901842 + AT_rich Low_complexity Low_complexity 1 22 0 5 1800 1231 21 0 0 chr1 159293668 159293809 -37901623 + B1_Mus1 SINE Alu 1 141 -7 5 1800 34 24 0 0 chr1 159293813 159293854 -37901578 + AT_rich Low_complexity Low_complexity 1 41 0 5 1800 1018 109 0 13 chr1 159295351 159295500 -37899932 + B1_Mus1 SINE Alu 1 147 -1 5 1800 21 57 0 0 chr1 159295845 159295880 -37899552 + AT_rich Low_complexity Low_complexity 1 35 0 5 1800 1514 37 32 0 chr1 159295936 159296123 -37899309 + B2_Mm1t SINE B2 1 193 0 5 1800 2590 55 0 3 chr1 159296966 159297296 -37898136 + L1Md_F2 LINE L1 6246 6574 -8 5 1800 23 33 0 0 chr1 159297296 159297326 -37898106 + AT_rich Low_complexity Low_complexity 1 30 0 5 1800 423 301 18 82 chr1 159297512 159297682 -37897750 + B4A SINE B4 1 159 -133 5 1800 232 216 40 13 chr1 159297778 159297853 -37897579 + (CATA)n Simple_repeat Simple_repeat 1 77 0 5 1800 219 36 0 0 chr1 159297996 159298024 -37897408 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1800 2889 120 42 8 chr1 159299020 159299492 -37895940 - Lx4A LINE L1 -17 7041 6554 5 1800 304 296 199 97 chr1 159299700 159300041 -37895391 + MLT1J LTR MaLR 46 421 -91 5 1800 673 123 61 15 chr1 159300246 159300378 -37895054 - URR1B DNA MER1_type 0 225 88 5 1800 977 142 0 7 chr1 159300365 159300514 -37894918 - B2_Mm2 SINE B2 -46 149 2 5 1800 450 88 0 0 chr1 159300646 159300714 -37894718 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1800 261 139 0 0 chr1 159300715 159300758 -37894674 + (CCTG)n Simple_repeat Simple_repeat 1 43 0 5 1800 364 17 86 0 chr1 159301123 159301181 -37894251 + B2_Mm2 SINE B2 130 192 -3 5 1800 22 0 0 0 chr1 159301433 159301455 -37893977 + AT_rich Low_complexity Low_complexity 1 22 0 5 1800 746 73 36 9 chr1 159303043 159303153 -37892279 + B1_Mus1 SINE Alu 36 148 0 5 1800 431 311 9 0 chr1 159303327 159303433 -37891999 + RSINE1 SINE B4 2 108 -57 5 1800 279 197 76 0 chr1 159303562 159303628 -37891804 - MurSatRep1 Unknown Unknown -1860 277 207 5 1800 985 291 21 7 chr1 159303829 159304113 -37891319 - B4A SINE B4 0 292 5 5 1800 244 188 47 12 chr1 159304123 159304209 -37891223 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1800 353 296 0 24 chr1 159304617 159304700 -37890732 + ID4 SINE ID 1 81 -2 5 1800 782 294 114 87 chr1 159304710 159305123 -37890309 + MLT1F1 LTR MaLR 56 479 -90 5 1800 5102 104 8 36 chr1 159305126 159306303 -37889129 - Lx LINE L1 -156 6498 5370 5 1800 4079 62 6 4 chr1 159306305 159306822 -37888610 + L1Md_F2 LINE L1 6064 6581 -1 5 1800 1023 102 0 39 chr1 159306827 159306980 -37888452 + B1_Mus1 SINE Alu 2 148 0 5 1800 258 156 0 0 chr1 159306980 159307025 -37888407 + A-rich Low_complexity Low_complexity 1 45 0 5 1800 324 287 0 0 chr1 159307026 159307113 -37888319 + MLT1F1 LTR MaLR 454 540 -8 5 1800 21 0 0 0 chr1 159307712 159307733 -37887699 + AT_rich Low_complexity Low_complexity 1 21 0 5 1800 2418 179 28 19 chr1 159308518 159308991 -37886441 - Lx5 LINE L1 -3 7047 6571 5 1800 22 35 0 0 chr1 159309044 159309073 -37886359 + AT_rich Low_complexity Low_complexity 1 29 0 5 1800 448 328 19 38 chr1 159309136 159309345 -37886087 + L1M4 LINE L1 5282 5486 -688 5 1800 279 256 51 0 chr1 159309387 159309465 -37885967 + GA-rich Low_complexity Low_complexity 3 84 0 5 1800 194 305 50 17 chr1 159309919 159309979 -37885453 + MIR3 SINE MIR 133 194 -14 5 1800 651 224 7 20 chr1 159311119 159311269 -37884163 + B1_Mur2 SINE Alu 2 149 0 5 1800 297 298 134 51 chr1 159311748 159311962 -37883470 + B4A SINE B4 1 232 -60 5 1800 695 218 131 63 chr1 159311962 159312168 -37883264 + B4 SINE B4 4 223 -69 5 1800 1070 45 0 0 chr1 159312037 159312171 -37883261 + B1_Mus1 SINE Alu 15 148 0 5 1800 687 296 60 82 chr1 159312185 159312417 -37883015 + B4A SINE B4 64 290 -2 5 1800 238 286 0 41 chr1 159312368 159312441 -37882991 + B3A SINE B2 114 183 -15 5 1800 459 0 0 0 chr1 159312537 159312588 -37882844 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1800 22 56 0 0 chr1 159313302 159313338 -37882094 + AT_rich Low_complexity Low_complexity 1 36 0 5 1800 355 333 0 9 chr1 159313428 159313543 -37881889 + PB1 SINE Alu 3 116 -11 5 1800 207 152 0 0 chr1 159314107 159314153 -37881279 + A-rich Low_complexity Low_complexity 1 46 0 5 1800 516 72 0 0 chr1 159314511 159314580 -37880852 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 1800 30 0 0 44 chr1 159314603 159314621 -37880811 + AT_rich Low_complexity Low_complexity 1 17 0 5 1800 989 58 65 0 chr1 159314621 159314760 -37880672 + B1_Mus1 SINE Alu 1 148 0 5 1800 30 0 0 44 chr1 159314760 159314786 -37880646 + AT_rich Low_complexity Low_complexity 1 26 0 5 1800 1405 277 48 11 chr1 159314786 159315330 -37880102 + L1MB4 LINE L1 5595 6158 -22 5 1800 22 0 0 0 chr1 159315339 159315361 -37880071 + AT_rich Low_complexity Low_complexity 1 22 0 5 1800 313 299 0 25 chr1 159315406 159315485 -37879947 - PB1D10 SINE Alu -12 105 29 5 1800 226 235 0 0 chr1 159315510 159315561 -37879871 + L1ME1 LINE L1 5559 5609 -555 5 1800 323 306 12 0 chr1 159315562 159315647 -37879785 + ID_B1 SINE B4 85 170 -54 5 1800 444 322 56 29 chr1 159315743 159316151 -37879281 + L1ME1 LINE L1 5683 6096 -83 5 1800 1166 62 0 0 chr1 159316620 159316765 -37878667 - B1_Mus2 SINE Alu 0 147 3 5 1800 1360 94 0 10 chr1 159317050 159317244 -37878188 + B2_Mm2 SINE B2 2 193 -2 5 1800 195 322 17 0 chr1 159317328 159317387 -37878045 - MER5A DNA MER1_type 0 189 130 5 1800 184 277 136 15 chr1 159318312 159318378 -37877054 + L2b LINE L2 87 160 -3259 5 1800 21 36 0 0 chr1 159318597 159318625 -37876807 + AT_rich Low_complexity Low_complexity 1 28 0 5 1800 1800 162 35 40 chr1 159318880 159319334 -37876098 + RMER17C LTR ERVK 16 439 -519 5 1800 1084 96 0 0 chr1 159319613 159319759 -37875673 + B1_Mus2 SINE Alu 2 147 0 5 1800 287 65 22 0 chr1 159319763 159319809 -37875623 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1800 216 97 0 0 chr1 159319959 159319990 -37875442 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1800 255 319 173 30 chr1 159320169 159320366 -37875066 + L2b LINE L2 2584 2808 -611 5 1800 411 391 48 26 chr1 159320403 159320634 -37874798 + L2b LINE L2 2918 3153 -222 5 1800 279 338 102 38 chr1 159321025 159321182 -37874250 + Charlie13a DNA Charlie 134 300 -1214 5 1800 637 309 5 33 chr1 159321188 159321372 -37874060 - B4 SINE B4 -112 180 2 5 1800 1017 248 103 12 chr1 159321375 159321865 -37873567 + L1M4 LINE L1 5176 5728 -456 5 1800 1101 72 0 0 chr1 159322128 159322266 -37873166 - B1_Mus2 SINE Alu -9 138 1 5 1800 406 171 132 140 chr1 159322266 159322402 -37873030 + RSINE1 SINE B4 31 165 0 5 1800 6804 206 94 37 chr1 159322424 159323307 -37872125 - Lx7 LINE L1 -21 7675 6758 5 1800 862 106 400 0 chr1 159323307 159323467 -37871965 - URR1A DNA MER1_type -1 225 2 5 1800 6804 203 98 36 chr1 159323467 159324200 -37871232 - Lx7 LINE L1 -939 6757 5999 5 1800 11294 213 57 57 chr1 159324227 159325272 -37870160 - Lx7 LINE L1 -1766 5930 4870 5 1800 1795 154 0 7 chr1 159325272 159325560 -37869872 + Lx4A LINE L1 6773 7058 0 5 1800 11294 216 83 83 chr1 159325560 159326120 -37869312 - Lx7 LINE L1 -1011 4869 4329 5 1800 2355 68 0 6 chr1 159326120 159326431 -37869001 + L1Md_F2 LINE L1 6262 6570 -12 5 1800 11294 216 76 72 chr1 159326431 159330018 -37865414 - Lx7 LINE L1 -1552 4328 729 5 1800 1162 136 38 0 chr1 159330470 159330654 -37864778 + B2_Mm2 SINE B2 2 192 -3 5 1800 801 112 31 39 chr1 159330941 159331071 -37864361 + B1_Mur4 SINE Alu 1 129 -21 5 1800 5944 58 0 3 chr1 159331089 159331832 -37863600 + L1_Mm LINE L1 4844 5586 -297 5 1800 8185 44 0 0 chr1 159331832 159332817 -37862615 + L1Md_F2 LINE L1 5587 6571 -11 5 1800 411 301 49 1 chr1 159333085 159333224 -37862208 - B1F1 SINE Alu 0 149 6 5 1800 284 0 0 0 chr1 159333870 159333910 -37861522 + L1Md_T LINE L1 6543 6582 0 5 1800 213 182 0 0 chr1 159333931 159333986 -37861446 + A-rich Low_complexity Low_complexity 1 55 0 5 1800 212 0 36 0 chr1 159334437 159334465 -37860967 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1800 979 217 24 19 chr1 159334712 159334919 -37860513 + B3 SINE B2 1 208 -8 5 1800 183 114 0 0 chr1 159335134 159335169 -37860263 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1800 598 284 0 7 chr1 159335650 159335799 -37859633 + B1F SINE Alu 1 148 -1 5 1800 1204 54 0 0 chr1 159336283 159336430 -37859002 + B1_Mus1 SINE Alu 2 148 0 5 1800 28 0 0 0 chr1 159336430 159336458 -37858974 + AT_rich Low_complexity Low_complexity 1 28 0 6 1800 428 266 0 0 chr1 159336582 159336676 -37858756 - PB1D10 SINE Alu -21 96 3 6 1800 578 281 106 40 chr1 159336720 159336994 -37858438 + B4A SINE B4 1 292 0 6 1800 220 293 74 89 chr1 159337392 159337412 -37858020 + B4A SINE B4 85 217 -75 6 1800 635 174 35 0 chr1 159337412 159337527 -37857905 + B1_Mur3 SINE Alu 21 139 -10 6 1800 780 197 7 7 chr1 159339329 159339472 -37855960 + B1_Mur1 SINE Alu 2 144 -5 6 1800 1172 88 0 0 chr1 159339548 159339695 -37855737 - B1_Mus2 SINE Alu 0 147 1 6 1800 212 194 0 0 chr1 159340528 159340564 -37854868 + A-rich Low_complexity Low_complexity 1 36 0 6 1800 334 339 54 16 chr1 159340653 159340782 -37854650 - MIR3 SINE MIR -31 177 44 6 1800 21 0 0 0 chr1 159342087 159342108 -37853324 + GC_rich Low_complexity Low_complexity 1 21 0 6 1800 303 28 0 0 chr1 159343465 159343501 -37851931 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 6 1800 244 312 13 0 chr1 159343804 159343881 -37851551 - MIR3 SINE MIR -4 204 127 6 1800 600 53 0 0 chr1 159344153 159344229 -37851203 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 6 1800 875 152 0 33 chr1 159344229 159344379 -37851053 - B1_Mur3 SINE Alu -4 145 1 6 1800 483 222 48 0 chr1 159345008 159345134 -37850298 + ID_B1 SINE B4 92 223 -1 6 1800 799 175 0 21 chr1 159345170 159345310 -37850122 - B1_Mur4 SINE Alu -13 137 1 6 1800 297 0 0 0 chr1 159346493 159346526 -37848906 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1800 1231 48 0 0 chr1 159346526 159346673 -37848759 - B1_Mm SINE Alu 0 147 1 6 1800 276 192 244 0 chr1 159347281 159347359 -37848073 + PB1 SINE Alu 24 120 -7 6 1800 194 139 47 0 chr1 159348147 159348190 -37847242 + GA-rich Low_complexity Low_complexity 1 45 0 6 1800 1154 42 35 0 chr1 159348620 159348762 -37846670 - B1_Mm SINE Alu 0 147 1 6 1800 878 81 97 0 chr1 159349543 159349667 -37845765 - B1_Mus1 SINE Alu -12 136 1 6 1800 384 22 0 0 chr1 159349841 159349886 -37845546 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 6 1800 1294 27 0 0 chr1 159351041 159351187 -37844245 + B1_Mm SINE Alu 2 147 0 6 1800 837 121 117 29 chr1 159351213 159351384 -37844048 + B2_Mm2 SINE B2 3 188 -7 6 1800 1207 54 0 0 chr1 159351390 159351538 -37843894 + B1_Mus1 SINE Alu 1 148 0 6 1800 222 37 0 0 chr1 159351538 159351565 -37843867 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1800 264 59 0 0 chr1 159351908 159351942 -37843490 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1800 355 287 138 25 chr1 159352017 159352342 -37843090 - L1M4 LINE L1 -1712 4434 4073 6 1800 1039 62 8 0 chr1 159352462 159352592 -37842840 + B1_Mus1 SINE Alu 1 131 -17 6 1800 566 49 0 12 chr1 159352593 159352676 -37842756 + B1_Mur4 SINE Alu 69 150 0 6 1800 348 305 148 31 chr1 159352691 159352948 -37842484 - L1M4 LINE L1 -2202 3944 3658 6 1800 2486 131 62 10 chr1 159353089 159353436 -37841996 + MTC LTR MaLR 1 367 -54 6 1800 288 0 0 0 chr1 159353436 159353468 -37841964 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1800 2486 131 62 10 chr1 159353468 159353520 -37841912 + MTC LTR MaLR 368 420 -1 6 1800 985 132 11 0 chr1 159353652 159353782 -37841650 + (TCC)n Simple_repeat Simple_repeat 2 133 0 6 1800 1146 84 6 22 chr1 159353782 159353965 -37841467 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1800 985 132 11 0 chr1 159353965 159354008 -37841424 + (TCC)n Simple_repeat Simple_repeat 1 43 0 6 1800 242 390 62 22 chr1 159354847 159355120 -37840312 + L2c LINE L2 3055 3338 -49 6 1800 685 237 52 13 chr1 159355130 159355284 -37840148 + RSINE1 SINE B4 6 165 0 6 1800 1394 213 43 12 chr1 159355360 159355683 -37839749 - ORR1D2 LTR MaLR -37 333 1 6 1800 789 253 166 7 chr1 159355771 159356042 -37839390 - MLT1A0 LTR MaLR -19 346 33 6 1800 487 356 49 11 chr1 159356147 159356431 -37839001 - LTR85b LTR Gypsy? -33 751 457 6 1800 1546 47 5 20 chr1 159356761 159356956 -37838476 + B2_Mm1a SINE B2 2 193 0 6 1800 291 310 56 19 chr1 159357531 159357692 -37837740 - L2 LINE L2 -1170 2249 2083 6 1800 626 275 0 34 chr1 159358144 159358291 -37837141 - RSINE1 SINE B4 -22 143 2 6 1800 258 178 0 0 chr1 159358332 159358377 -37837055 + ZP3AR Satellite Satellite 38 82 -130 6 1800 681 75 0 0 chr1 159358337 159358431 -37837001 + BC1_Mm scRNA scRNA 1 94 -58 6 1800 261 0 0 0 chr1 159358791 159358820 -37836612 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 6 1800 29 104 0 0 chr1 159359460 159359566 -37835866 + AT_rich Low_complexity Low_complexity 1 106 0 6 1800 506 175 29 58 chr1 159360011 159360114 -37835318 + RSINE1 SINE B4 28 127 -38 6 1800 243 0 0 0 chr1 159360115 159360142 -37835290 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1800 33 43 0 0 chr1 159360143 159360190 -37835242 + AT_rich Low_complexity Low_complexity 1 47 0 6 1800 424 256 44 29 chr1 159360207 159360306 -37835126 + B1F SINE Alu 2 103 -46 6 1800 225 0 0 0 chr1 159360306 159360331 -37835101 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1800 424 256 44 29 chr1 159360331 159360368 -37835064 + B1F SINE Alu 104 140 -9 6 1800 226 319 42 0 chr1 159360371 159360443 -37834989 + ID4_ SINE ID 9 83 0 6 1800 217 223 5 18 chr1 159360574 159360649 -37834783 - MIRb SINE MIR -35 233 160 6 1800 280 346 42 18 chr1 159361275 159361440 -37833992 + MLT1F2 LTR MaLR 311 479 -81 6 1800 405 0 0 0 chr1 159361575 159361620 -37833812 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1800 186 43 0 0 chr1 159361657 159361680 -37833752 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 6 1800 3542 148 116 8 chr1 159361829 159362441 -37832991 - RLTR33 LTR ERVK 0 678 1 6 1800 478 194 32 0 chr1 159362756 159362849 -37832583 + PB1 SINE Alu 29 124 -3 6 1800 311 280 21 0 chr1 159362855 159362948 -37832484 + L1MEg LINE L1 1882 1976 -4108 6 1800 1331 78 28 11 chr1 159362955 159363136 -37832296 + B2_Mm2 SINE B2 2 185 -10 6 1800 235 320 168 0 chr1 159363169 159363294 -37832138 - MIRb SINE MIR -99 169 24 6 1800 24 0 0 0 chr1 159363919 159363943 -37831489 + AT_rich Low_complexity Low_complexity 1 24 0 6 1800 529 187 0 28 chr1 159363943 159364073 -37831359 - B1_Mur4 SINE Alu 0 120 1 6 1800 180 111 0 0 chr1 159364173 159364200 -37831232 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1800 813 248 48 14 chr1 159364524 159364733 -37830699 - ID_B1 SINE B4 -2 222 7 6 1800 200 238 67 29 chr1 159364773 159364877 -37830555 + L2 LINE L2 2242 2349 -1070 6 1800 236 293 84 25 chr1 159365269 159365388 -37830044 - B4 SINE B4 -42 250 125 6 1800 285 225 42 14 chr1 159365471 159365543 -37829889 - B4A SINE B4 -216 76 3 6 1800 3163 46 20 5 chr1 159365546 159365936 -37829496 + MTA_Mm LTR MaLR 1 396 0 6 1800 198 103 0 0 chr1 159366032 159366061 -37829371 + (CATA)n Simple_repeat Simple_repeat 2 30 0 6 1800 709 295 84 18 chr1 159366070 159366356 -37829076 - L1MA6 LINE L1 -362 5938 5634 6 1800 309 317 40 0 chr1 159366470 159366571 -37828861 + L2 LINE L2 2714 2818 -601 6 1800 1122 109 43 49 chr1 159366836 159367020 -37828412 - B2_Mm1a SINE B2 -9 184 2 6 1800 268 321 0 12 chr1 159367506 159367591 -37827841 + MIR SINE MIR 9 92 -170 6 1800 1070 101 0 20 chr1 159367607 159367758 -37827674 + B1_Mus1 SINE Alu 1 148 0 6 1800 1502 43 37 0 chr1 159367814 159368002 -37827430 - B2_Mm2 SINE B2 0 195 1 6 1800 221 352 69 21 chr1 159368002 159368140 -37827292 + MIR SINE MIR 115 260 -2 6 1800 259 320 0 13 chr1 159368317 159368393 -37827039 + ID4_ SINE ID 6 80 -3 6 1800 214 195 0 0 chr1 159368411 159368452 -37826980 + GA-rich Low_complexity Low_complexity 2 42 0 6 1800 207 0 0 0 chr1 159368924 159368947 -37826485 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1800 1201 48 7 0 chr1 159368997 159369142 -37826290 + B1_Mm SINE Alu 2 147 0 6 1800 221 75 25 0 chr1 159369144 159369184 -37826248 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 6 1800 213 65 0 0 chr1 159370353 159370384 -37825048 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1800 556 286 14 0 chr1 159370971 159371118 -37824314 - B1F2 SINE Alu 0 149 1 6 1800 338 334 168 39 chr1 159371692 159372103 -37823329 + L2a LINE L2 2495 2958 -461 6 1800 773 121 20 20 chr1 159372161 159372313 -37823119 + CT-rich Low_complexity Low_complexity 1 152 0 6 1800 397 301 64 69 chr1 159372395 159372613 -37822819 + L2a LINE L2 3209 3425 -1 6 1800 180 0 0 0 chr1 159372782 159372802 -37822630 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1800 1272 27 7 0 chr1 159372811 159372958 -37822474 - B1_Mus1 SINE Alu 0 148 1 6 1800 637 183 7 37 chr1 159372972 159373108 -37822324 - B3 SINE B2 0 216 85 6 1800 234 0 0 0 chr1 159374053 159374079 -37821353 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1800 1386 45 79 0 chr1 159375461 159375480 -37819952 - B2_Mm1a SINE B2 0 193 162 6 1800 279 0 0 0 chr1 159375480 159375511 -37819921 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 1800 1386 45 79 0 chr1 159375511 159375669 -37819763 - B2_Mm1a SINE B2 -32 161 3 6 1800 311 277 104 101 chr1 159375766 159376063 -37819369 + L2b LINE L2 3070 3367 -8 6 1800 196 309 0 0 chr1 159376692 159376747 -37818685 - MER5A DNA MER1_type 0 189 135 6 1800 333 0 0 0 chr1 159376930 159376967 -37818465 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1800 182 136 23 0 chr1 159376972 159377016 -37818416 + GA-rich Low_complexity Low_complexity 1 45 0 6 1800 1013 65 72 0 chr1 159379260 159379398 -37816034 + B1_Mus1 SINE Alu 1 148 0 6 1800 255 130 0 0 chr1 159379454 159379508 -37815924 + (A)n Simple_repeat Simple_repeat 1 54 0 6 1800 185 152 152 0 chr1 159380069 159380115 -37815317 + MIRb SINE MIR 146 198 -70 6 1800 23 33 0 0 chr1 159380511 159380541 -37814891 + AT_rich Low_complexity Low_complexity 1 30 0 6 1800 439 265 37 15 chr1 159380608 159380742 -37814690 + L2a LINE L2 3290 3426 0 6 1800 279 336 67 30 chr1 159380889 159381024 -37814408 - MIRb SINE MIR -105 163 24 6 1800 504 86 0 0 chr1 159381304 159381374 -37814058 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 7 1800 530 152 40 56 chr1 159381374 159381473 -37813959 - B1_Mur4 SINE Alu 0 150 53 7 1800 3151 62 177 2 chr1 159381473 159381909 -37813523 - RLTR1B LTR ERV1 0 512 1 7 1800 530 152 40 56 chr1 159381909 159381934 -37813498 - B1_Mur4 SINE Alu -98 52 29 7 1800 1376 99 5 0 chr1 159381938 159382129 -37813303 - B2_Mm1a SINE B2 0 193 2 7 1800 1701 26 0 0 chr1 159382151 159382343 -37813089 - B2_Mm1a SINE B2 0 193 2 7 1800 394 374 15 0 chr1 159382416 159382614 -37812818 - MIRb SINE MIR -64 204 4 7 3 301 246 45 83 chr1 159383482 159383642 -37811790 + MIR SINE MIR 64 232 -36 7 1801 192 125 0 0 chr1 159383782 159383814 -37811618 + (TGG)n Simple_repeat Simple_repeat 1 32 0 7 1801 344 181 54 98 chr1 159384001 159384093 -37811339 - PB1D9 SINE Alu -8 112 25 7 1801 1411 52 17 0 chr1 159384410 159384582 -37810850 + B2_Mm2 SINE B2 4 178 -17 7 1801 273 29 0 0 chr1 159384607 159384641 -37810791 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1801 214 276 86 67 chr1 159384670 159384775 -37810657 + B3 SINE B2 97 203 -13 7 1801 182 91 30 0 chr1 159384778 159384811 -37810621 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 7 1801 192 77 0 0 chr1 159384813 159384839 -37810593 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1801 1376 95 16 21 chr1 159385616 159385810 -37809622 - B2_Mm2 SINE B2 0 195 3 7 1801 613 289 62 80 chr1 159385958 159386233 -37809199 + B4A SINE B4 1 270 -22 7 1801 521 152 32 11 chr1 159386518 159386611 -37808821 + B1_Mur2 SINE Alu 3 97 -52 7 1801 211 306 32 0 chr1 159386712 159386774 -37808658 - ID2 SINE ID -8 75 12 7 1801 394 215 0 12 chr1 159386837 159386917 -37808515 - ID4_ SINE ID 0 83 5 7 1801 216 0 0 0 chr1 159387490 159387514 -37807918 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1801 576 280 0 0 chr1 159387546 159387671 -37807761 - RSINE1 SINE B4 -33 132 8 7 1801 777 209 0 0 chr1 159387858 159387992 -37807440 - B1_Mur1 SINE Alu -8 141 8 7 1801 365 255 19 19 chr1 159388001 159388105 -37807327 - PB1D10 SINE Alu 0 117 14 7 1801 222 278 96 43 chr1 159388038 159388132 -37807300 - B4A SINE B4 -123 169 71 7 1801 435 164 171 9 chr1 159388351 159388462 -37806970 + B1F2 SINE Alu 14 142 -7 7 1801 30 0 0 0 chr1 159388790 159388820 -37806612 + GC_rich Low_complexity Low_complexity 1 30 0 7 1801 263 297 0 0 chr1 159389718 159389782 -37805650 - PB1D10 SINE Alu -26 91 28 7 1801 189 245 120 60 chr1 159390171 159390271 -37805161 - MER5A DNA MER1_type -23 166 61 6 1801 521 227 0 9 chr1 159390278 159390389 -37805043 - PB1D9 SINE Alu 0 120 11 7 1801 268 260 0 40 chr1 159390403 159390479 -37804953 - MER5A DNA MER1_type -116 73 1 6 1801 1307 139 9 35 chr1 159390500 159390546 -37804886 + URR1A DNA MER1_type 2 48 -178 7 1801 4297 27 12 0 chr1 159390546 159391033 -37804399 - MT2_Mm LTR ERVL 0 493 1 7 1801 1307 139 9 35 chr1 159391033 159391217 -37804215 + URR1A DNA MER1_type 49 226 0 7 1801 606 208 92 0 chr1 159391718 159391848 -37803584 + B1F SINE Alu 1 142 -7 7 1801 1094 184 413 0 chr1 159392413 159392706 -37802726 - MTD LTR MaLR -4 415 2 7 1801 901 128 7 39 chr1 159393017 159393172 -37802260 - B1_Mur4 SINE Alu 0 150 1 7 1801 1094 29 0 0 chr1 159393725 159393864 -37801568 + B1_Mus1 SINE Alu 10 148 0 7 1801 207 0 0 0 chr1 159393864 159393887 -37801545 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1801 663 161 0 0 chr1 159394074 159394192 -37801240 + CT-rich Low_complexity Low_complexity 4 121 0 7 1801 1146 81 11 6 chr1 159394193 159394368 -37801064 - B2_Mm2 SINE B2 0 195 20 7 1801 465 175 217 0 chr1 159394392 159394512 -37800920 - B1_Mur4 SINE Alu -4 146 1 7 1801 466 277 30 15 chr1 159396020 159396152 -37799280 + ID_B1 SINE B4 69 202 -22 7 1801 523 226 7 139 chr1 159396421 159396565 -37798867 - B1F1 SINE Alu -7 142 3 7 1801 851 191 0 0 chr1 159396669 159396810 -37798622 - B1_Mur4 SINE Alu -9 141 1 7 1801 204 334 143 108 chr1 159397578 159397920 -37797512 + L2a LINE L2 3017 3421 -5 7 1801 230 372 13 26 chr1 159398767 159398919 -37796513 - MIRc SINE MIR -34 234 85 7 1801 407 225 0 0 chr1 159399569 159399658 -37795774 + BC1_Mm scRNA scRNA 17 105 -47 7 1801 312 276 11 0 chr1 159399700 159399787 -37795645 + PB1D10 SINE Alu 26 113 -4 7 1801 208 282 22 56 chr1 159400049 159400139 -37795293 + MIRb SINE MIR 31 117 -151 7 1801 261 198 0 0 chr1 159400433 159400486 -37794946 - MIRb SINE MIR -178 90 35 7 1801 390 266 86 31 chr1 159401547 159401675 -37793757 - ID_B1 SINE B4 -6 218 84 7 1801 201 39 0 0 chr1 159403211 159403237 -37792195 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 7 1801 189 190 0 0 chr1 159404411 159404450 -37790982 + T-rich Low_complexity Low_complexity 20 58 0 7 1801 1149 35 43 0 chr1 159404450 159404591 -37790841 - B1_Mm SINE Alu 0 147 1 7 1801 189 190 0 0 chr1 159404591 159404609 -37790823 + T-rich Low_complexity Low_complexity 2 19 0 7 1801 751 218 0 20 chr1 159404609 159404759 -37790673 - B1_Mur1 SINE Alu 0 149 3 7 1801 315 96 0 0 chr1 159406412 159406464 -37788968 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1801 280 133 0 0 chr1 159407263 159407308 -37788124 - B3 SINE B2 -133 83 39 7 1801 1022 295 131 15 chr1 159407335 159407807 -37787625 - Lx8 LINE L1 -2 7471 6945 7 1801 278 326 0 78 chr1 159407849 159407952 -37787480 - B1F2 SINE Alu -52 97 3 7 1801 246 333 0 105 chr1 159407952 159407973 -37787459 - ID_B1 SINE B4 -49 175 65 7 1801 427 329 17 12 chr1 159407977 159408149 -37787283 - L1ME1 LINE L1 -90 6089 5917 7 1801 2015 124 62 72 chr1 159408251 159408641 -37786791 - ORR1B1 LTR MaLR 0 394 9 7 1801 897 201 22 16 chr1 159408648 159408830 -37786602 - B3 SINE B2 -33 183 1 7 1801 285 282 39 0 chr1 159408845 159408923 -37786509 - L1MD1 LINE L1 -361 5881 5801 7 1801 1170 114 109 0 chr1 159408932 159409107 -37786325 - B2_Mm2 SINE B2 -1 194 1 7 1801 384 272 195 5 chr1 159409145 159409330 -37786102 - L1ME1 LINE L1 -369 5810 5591 7 1801 681 290 23 15 chr1 159409767 159410030 -37785402 - L1ME1 LINE L1 -572 5607 5343 7 1801 293 250 0 95 chr1 159410048 159410132 -37785300 - ID4_ SINE ID 0 83 8 7 1801 226 322 58 45 chr1 159410935 159411091 -37784341 + Tigger15a DNA TcMar 544 701 -14 7 1801 569 343 72 47 chr1 159411444 159412233 -37783199 - L1ME5 LINE L1 -16 6178 5370 7 1801 935 258 47 116 chr1 159412460 159412619 -37782813 - ORR1E LTR MaLR 0 359 213 7 1801 1661 22 0 0 chr1 159412619 159412803 -37782629 + B2_Mm1a SINE B2 2 185 -8 7 1801 935 258 47 116 chr1 159412803 159413024 -37782408 - ORR1E LTR MaLR -147 212 5 7 1801 203 196 18 0 chr1 159413122 159413178 -37782254 + A-rich Low_complexity Low_complexity 1 57 0 7 1801 599 201 92 54 chr1 159413353 159413498 -37781934 + URR1A DNA MER1_type 1 157 -69 7 1801 1146 82 0 0 chr1 159413498 159413645 -37781787 + B1_Mus1 SINE Alu 2 148 0 7 1801 599 201 92 54 chr1 159413645 159413683 -37781749 + URR1A DNA MER1_type 158 191 -35 7 1801 423 298 9 0 chr1 159413662 159413776 -37781656 - PB1 SINE Alu -11 116 2 7 1801 2411 222 98 29 chr1 159413860 159414491 -37780941 - Lx6 LINE L1 0 7460 6786 7 1801 865 213 11 0 chr1 159415166 159415340 -37780092 + B2_Mm1t SINE B2 4 179 -14 7 1801 259 57 0 0 chr1 159415395 159415430 -37780002 + B2_Mm2 SINE B2 47 81 -114 7 1801 875 283 68 32 chr1 159415522 159415902 -37779530 - L1MC2 LINE L1 -109 6235 5842 7 1801 1276 61 71 16 chr1 159415908 159416090 -37779342 - B2_Mm2 SINE B2 -2 193 2 7 1801 551 176 18 27 chr1 159416099 159416210 -37779222 - B1_Mus1 SINE Alu -5 143 34 7 1801 909 262 179 5 chr1 159416210 159416590 -37778842 - L1MD LINE L1 -2226 5769 5324 7 1801 358 125 25 0 chr1 159416621 159416701 -37778731 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 7 1801 230 294 0 38 chr1 159416701 159416807 -37778625 - L1MC2 LINE L1 -893 5253 5152 7 1801 576 295 116 62 chr1 159416812 159416993 -37778439 - B4A SINE B4 -2 290 97 7 1801 1107 62 14 0 chr1 159416993 159417137 -37778295 - B1_Mur4 SINE Alu -3 147 2 7 1801 576 295 116 62 chr1 159417137 159417162 -37778270 - B4A SINE B4 -196 96 72 7 1801 261 0 0 0 chr1 159417162 159417191 -37778241 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 7 1801 576 295 116 62 chr1 159417191 159417258 -37778174 - B4A SINE B4 -221 71 2 7 1801 418 312 19 13 chr1 159417282 159417441 -37777991 - RSINE1 SINE B4 -4 161 2 7 1801 410 321 38 5 chr1 159417442 159417627 -37777805 - L1MC2 LINE L1 -981 5165 4975 7 1801 442 191 92 34 chr1 159417945 159418064 -37777368 + RMER4B LTR ERVK 342 467 -118 7 1801 3369 46 2 2 chr1 159418850 159419246 -37776186 + MTA_Mm LTR MaLR 1 396 0 7 1801 203 182 24 61 chr1 159419374 159419456 -37775976 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 7 1801 588 239 92 131 chr1 159419456 159419869 -37775563 + L1MB3 LINE L1 5783 6179 -4 7 1801 386 195 34 22 chr1 159420207 159420296 -37775136 - B4A SINE B4 -14 278 189 7 1801 384 322 0 0 chr1 159420446 159420561 -37774871 + Tigger5 DNA MER2_type 2291 2405 -1 7 1801 537 221 261 51 chr1 159420747 159420981 -37774451 + B4A SINE B4 1 283 -9 7 1801 193 146 42 0 chr1 159421015 159421063 -37774369 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1801 1425 69 16 5 chr1 159421136 159421325 -37774107 + B2_Mm2 SINE B2 1 191 -4 7 1801 324 260 0 0 chr1 159422156 159422229 -37773203 + ID4 SINE ID 3 75 -8 7 1801 1221 97 86 0 chr1 159422417 159422575 -37772857 + B2_Mm1t SINE B2 2 160 -33 7 1801 207 0 0 0 chr1 159422575 159422598 -37772834 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1801 1221 97 86 0 chr1 159422598 159422614 -37772818 + B2_Mm1t SINE B2 161 189 -4 7 1801 228 305 12 12 chr1 159423001 159423084 -37772348 + PB1D7 SINE Alu 37 119 -1 7 1801 230 275 70 28 chr1 159423139 159423281 -37772151 - L2 LINE L2 -455 2964 2817 7 1801 186 316 143 0 chr1 159423880 159424013 -37771419 + MIRc SINE MIR 81 232 -36 7 1801 225 301 54 78 chr1 159424353 159424519 -37770913 + CR1_Mam LINE CR1 2016 2177 -27 7 1801 312 282 115 45 chr1 159424875 159425031 -37770401 - B4 SINE B4 -6 286 120 8 1801 184 353 0 0 chr1 159425449 159425500 -37769932 + MIR3 SINE MIR 104 154 -54 8 1801 606 193 0 0 chr1 159425677 159425796 -37769636 - PB1D9 SINE Alu -1 119 1 8 1801 3500 160 150 87 chr1 159425967 159426816 -37768616 - RMER19B LTR ERVK 0 902 1 8 1801 434 323 19 121 chr1 159427416 159427673 -37767759 + ORR1D2 LTR MaLR 6 236 -134 8 1801 189 171 0 0 chr1 159427714 159427749 -37767683 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1801 394 314 176 13 chr1 159427749 159427988 -37767444 + MLT1C LTR MaLR 188 465 -2 8 1801 301 301 0 0 chr1 159428709 159428782 -37766650 - B4A SINE B4 -1 291 219 8 1801 747 206 144 21 chr1 159428802 159428990 -37766442 - B3 SINE B2 -5 211 1 8 1801 189 147 0 0 chr1 159428997 159429031 -37766401 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 8 1801 994 92 7 7 chr1 159429041 159429194 -37766238 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 8 1801 300 243 14 0 chr1 159429929 159429999 -37765433 - ID4_ SINE ID -11 72 2 8 1801 332 240 50 10 chr1 159429999 159430095 -37765337 - B1F SINE Alu -37 112 13 8 1801 326 272 0 39 chr1 159430604 159430784 -37764648 + (CA)n Simple_repeat Simple_repeat 1 173 0 8 1801 397 281 0 22 chr1 159430812 159431059 -37764373 + (CA)n Simple_repeat Simple_repeat 1 241 0 8 1801 365 285 0 43 chr1 159431089 159431276 -37764156 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1801 1125 192 132 36 chr1 159431321 159431624 -37763808 - IAPEY3_LTR LTR ERVK 0 332 1 8 1801 230 333 50 78 chr1 159432011 159432190 -37763242 + L2a LINE L2 3234 3407 -19 8 1801 217 261 45 30 chr1 159432250 159432317 -37763115 + MIRb SINE MIR 52 119 -149 8 1801 357 313 56 7 chr1 159432461 159432643 -37762789 - MIRb SINE MIR -30 238 39 8 1801 243 0 0 0 chr1 159432778 159432805 -37762627 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1801 473 276 12 50 chr1 159433335 159433495 -37761937 + MTD LTR MaLR 57 210 -209 8 1801 231 183 13 78 chr1 159433518 159433595 -37761837 + MIRc SINE MIR 77 148 -120 8 1801 630 269 116 37 chr1 159433612 159433811 -37761621 + MLT1A0 LTR MaLR 21 240 -125 8 1801 297 0 0 0 chr1 159433811 159433844 -37761588 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1801 630 269 116 37 chr1 159433844 159433938 -37761494 + MLT1A0 LTR MaLR 241 337 -28 8 1801 222 184 0 109 chr1 159434124 159434179 -37761253 + B2_Mm2 SINE B2 1 49 -146 8 1801 265 250 42 0 chr1 159434178 159434250 -37761182 + PB1D7 SINE Alu 45 119 -1 8 1801 1435 55 22 0 chr1 159434276 159434459 -37760973 - B2_Mm2 SINE B2 -7 188 2 8 1801 263 203 57 14 chr1 159434581 159434651 -37760781 + MLT1A0 LTR MaLR 265 337 -28 8 1801 1553 57 16 0 chr1 159435057 159435249 -37760183 - B2_Mm2 SINE B2 0 195 1 8 1801 1559 43 37 0 chr1 159436266 159436454 -37758978 + B2_Mm2 SINE B2 1 195 0 8 1801 204 122 0 0 chr1 159437190 159437231 -37758201 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1801 920 173 6 0 chr1 159437721 159437900 -37757532 + CT-rich Low_complexity Low_complexity 1 180 0 8 1801 207 0 0 0 chr1 159438615 159438638 -37756794 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1801 485 227 119 15 chr1 159438926 159439060 -37756372 - B1F SINE Alu -1 148 1 8 1801 5419 116 29 23 chr1 159440067 159440968 -37754464 + RMER17A2 LTR ERVK 1 906 0 8 1801 191 349 0 0 chr1 159441021 159441084 -37754348 + MIRm SINE MIR 213 275 -1 8 1801 442 378 32 94 chr1 159441095 159441466 -37753966 - MLT1K LTR MaLR -239 356 9 8 1801 683 165 118 15 chr1 159441495 159441630 -37753802 + B1_Mur4 SINE Alu 1 149 -1 8 1801 269 140 18 0 chr1 159441638 159441695 -37753737 + (CAA)n Simple_repeat Simple_repeat 2 59 0 8 1801 2197 132 42 68 chr1 159442155 159442579 -37752853 + MTC LTR MaLR 1 413 -8 8 1801 3094 303 104 39 chr1 159444427 159446272 -37749160 - Lx8 LINE L1 -123 7350 5328 8 1801 198 0 0 0 chr1 159446272 159446294 -37749138 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 8 1801 1170 82 6 19 chr1 159446294 159446456 -37748976 - B2_Mm1a SINE B2 -33 160 1 8 1801 460 280 74 22 chr1 159446457 159446687 -37748745 - L1M2 LINE L1 -746 5397 5156 8 1801 704 100 18 0 chr1 159446709 159446819 -37748613 + (TATG)n Simple_repeat Simple_repeat 3 114 0 8 1801 530 286 7 14 chr1 159446819 159446961 -37748471 - RSINE1 SINE B4 -24 141 1 8 1801 271 163 0 39 chr1 159446961 159447012 -37748420 - Lx8 LINE L1 -744 5136 5088 8 1801 466 287 45 71 chr1 159447716 159447744 -37747688 - B3A SINE B2 -6 192 169 8 1801 273 75 0 0 chr1 159447744 159447784 -37747648 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1801 466 287 45 71 chr1 159447784 159447909 -37747523 - B3A SINE B2 -30 168 43 8 1801 295 348 111 14 chr1 159449046 159449253 -37746179 - MIR SINE MIR -3 259 33 8 1801 285 0 0 0 chr1 159450158 159450200 -37745232 - L1_Mus1 LINE L1 0 6567 6526 8 1801 1871 88 4 8 chr1 159451051 159451316 -37744116 - Lx2 LINE L1 0 6997 6734 8 1801 250 304 50 29 chr1 159451649 159451788 -37743644 + L2 LINE L2 2357 2498 -921 8 1801 181 405 8 32 chr1 159452076 159452201 -37743231 + L2c LINE L2 3266 3387 0 8 1801 470 17 17 0 chr1 159452376 159452435 -37742997 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 8 1801 1083 310 34 20 chr1 159452787 159453142 -37742290 - MLT1A0 LTR MaLR -2 363 4 8 1801 549 0 0 0 chr1 159454157 159454218 -37741214 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 8 1801 4072 46 0 6 chr1 159454218 159454698 -37740734 - L1_Mus1 LINE L1 0 6567 6091 8 1801 258 253 36 48 chr1 159455136 159455219 -37740213 + L2c LINE L2 3296 3377 -10 8 1801 449 230 50 29 chr1 159455222 159455361 -37740071 + B1_Mur1 SINE Alu 5 146 -3 8 1801 343 216 6 43 chr1 159457431 159457595 -37737837 + (TG)n Simple_repeat Simple_repeat 2 159 0 8 1801 372 251 136 27 chr1 159457633 159457841 -37737591 - B4A SINE B4 -2 290 1 8 1801 262 264 116 65 chr1 159457899 159458037 -37737395 - MIR SINE MIR -13 249 105 8 1801 22 0 0 0 chr1 159458331 159458353 -37737079 + AT_rich Low_complexity Low_complexity 1 22 0 8 1801 481 167 22 39 chr1 159458467 159458648 -37736784 + (TATG)n Simple_repeat Simple_repeat 1 178 0 8 1801 626 93 10 71 chr1 159458623 159458935 -37736497 + (TG)n Simple_repeat Simple_repeat 1 292 0 8 1801 886 254 65 72 chr1 159458936 159458964 -37736468 - B4 SINE B4 0 292 270 8 1801 188 67 0 32 chr1 159458964 159458995 -37736437 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1801 886 254 65 72 chr1 159458995 159459259 -37736173 - B4 SINE B4 -23 269 2 8 1801 1155 15 0 0 chr1 159459740 159459873 -37735559 + (TTC)n Simple_repeat Simple_repeat 1 133 0 8 1801 1927 185 51 33 chr1 159459878 159460269 -37735163 - MTD LTR MaLR 0 419 22 8 1801 414 0 0 0 chr1 159461919 159461965 -37733467 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1801 898 200 38 5 chr1 159462512 159462698 -37732734 + Lx5 LINE L1 6858 7049 -1 8 1801 257 133 0 18 chr1 159463730 159463793 -37731639 - L1MC4a LINE L1 -10 7872 7818 8 1801 21 0 0 0 chr1 159463853 159463874 -37731558 + AT_rich Low_complexity Low_complexity 1 21 0 8 1801 180 350 12 12 chr1 159463928 159464009 -37731423 - MIRc SINE MIR 0 268 188 8 1801 341 127 0 40 chr1 159464044 159464111 -37731321 - B2_Mm2 SINE B2 -107 109 47 8 1801 1172 131 17 0 chr1 159464158 159464333 -37731099 - B2_Mm1t SINE B2 -14 179 2 8 1801 263 284 61 80 chr1 159464474 159464613 -37730819 - MIRm SINE MIR -128 148 3 8 1801 315 0 0 0 chr1 159466070 159466105 -37729327 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1801 823 287 3 58 chr1 159466142 159466434 -37728998 - B4A SINE B4 -16 276 1 8 1801 269 326 23 0 chr1 159467392 159467478 -37727954 + MIR3 SINE MIR 98 185 -23 8 1801 276 250 61 24 chr1 159468729 159468811 -37726621 + PB1D7 SINE Alu 35 119 -1 8 1801 260 306 16 0 chr1 159469303 159469365 -37726067 + B3A SINE B2 16 78 -120 8 1801 950 69 212 30 chr1 159469472 159469637 -37725795 + B2_Mm2 SINE B2 1 195 0 8 1801 658 304 39 2 chr1 159470029 159470190 -37725242 + B3A SINE B2 1 161 -37 8 1801 486 61 0 0 chr1 159470190 159470256 -37725176 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1801 333 337 37 53 chr1 159470256 159470282 -37725150 + B2_Mm1t SINE B2 161 185 -8 8 1801 1013 127 0 6 chr1 159470445 159470612 -37724820 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 8 1801 1907 70 0 0 chr1 159470627 159470869 -37724563 - L1Md_A LINE L1 0 6582 6341 8 1801 1156 37 0 0 chr1 159470869 159471003 -37724429 + L1Md_T LINE L1 6167 6300 -282 8 1801 333 309 31 0 chr1 159471006 159471103 -37724329 - MER58B DNA MER1_type -234 107 8 8 1801 594 284 102 11 chr1 159471259 159471533 -37723899 - L1MC LINE L1 -2203 5679 5381 8 1801 655 246 101 15 chr1 159471751 159471949 -37723483 - B3 SINE B2 0 216 2 8 1801 785 178 0 8 chr1 159472133 159472263 -37723169 + B3 SINE B2 2 130 -86 8 1801 207 0 0 0 chr1 159472647 159472670 -37722762 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 8 1801 354 329 111 17 chr1 159473378 159473613 -37721819 - MLT1J1 LTR MaLR -147 297 41 8 1801 369 0 0 0 chr1 159474149 159474190 -37721242 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1801 195 271 0 0 chr1 159474295 159474354 -37721078 + C-rich Low_complexity Low_complexity 2 60 0 8 1801 387 0 0 0 chr1 159474446 159474489 -37720943 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 8 1801 624 309 0 13 chr1 159474506 159474657 -37720775 - RSINE1 SINE B4 -8 157 9 8 1801 398 335 118 9 chr1 159476526 159476737 -37718695 - MIRb SINE MIR -11 257 24 8 1801 302 298 101 101 chr1 159477018 159477216 -37718216 - L1M7 LINE L1 -4789 1426 1229 8 1801 549 264 8 24 chr1 159477267 159477391 -37718041 - ID_B1 SINE B4 -23 201 80 8 1801 502 231 96 9 chr1 159477461 159477679 -37717753 - L1M7 LINE L1 -5146 1165 929 8 1801 341 198 0 10 chr1 159478398 159478500 -37716932 + CT-rich Low_complexity Low_complexity 1 101 0 8 1801 491 331 12 6 chr1 159479039 159479206 -37716226 - MIRb SINE MIR -15 253 86 9 1801 2293 206 19 12 chr1 159479206 159479786 -37715646 + L1_Rod LINE L1 4399 4973 -907 9 1801 483 242 0 4 chr1 159480242 159480496 -37714936 + (TG)n Simple_repeat Simple_repeat 1 252 0 9 1801 321 206 0 0 chr1 159480538 159480635 -37714797 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1801 25 0 0 0 chr1 159480654 159480679 -37714753 + AT_rich Low_complexity Low_complexity 1 25 0 9 1801 1151 68 0 20 chr1 159480679 159480830 -37714602 - B1_Mus1 SINE Alu 0 148 1 9 1801 525 146 75 28 chr1 159480832 159480938 -37714494 - PB1D7 SINE Alu 0 120 10 9 1801 661 104 24 94 chr1 159481324 159481451 -37713981 - URR1B DNA MER1_type -1 224 107 9 1801 1196 262 111 9 chr1 159481953 159482295 -37713137 - MTEa LTR MaLR -2 377 1 9 1801 393 331 48 54 chr1 159483733 159483880 -37711552 + B1F1 SINE Alu 4 149 0 9 1801 197 327 70 61 chr1 159484126 159484240 -37711192 + L2c LINE L2 3105 3219 -168 9 1801 321 26 0 0 chr1 159484331 159484369 -37711063 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1801 235 28 0 132 chr1 159484554 159484637 -37710795 + (CTAGGG)n Simple_repeat Simple_repeat 3 74 0 9 1801 198 0 0 0 chr1 159485000 159485022 -37710410 + (CGGGG)n Simple_repeat Simple_repeat 3 24 0 9 1801 362 340 87 18 chr1 159486229 159486448 -37708984 - MIRb SINE MIR -26 242 5 9 1801 237 171 158 0 chr1 159487745 159487821 -37707611 + MER5A1 DNA MER1_type 40 127 -39 9 1801 495 0 0 0 chr1 159489873 159489928 -37705504 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 1801 189 0 0 0 chr1 159491552 159491573 -37703859 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1801 1205 191 5 9 chr1 159491992 159492209 -37703223 - B3 SINE B2 0 216 1 9 1801 195 281 18 0 chr1 159492524 159492581 -37702851 - L2b LINE L2 0 3375 3318 9 1801 450 298 88 12 chr1 159492995 159493165 -37702267 + MIR SINE MIR 48 230 -32 9 1801 188 200 0 18 chr1 159493204 159493260 -37702172 + GA-rich Low_complexity Low_complexity 2 56 0 9 1801 1284 89 0 0 chr1 159493497 159493677 -37701755 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 9 1801 423 56 0 0 chr1 159493677 159493731 -37701701 + (TCCCC)n Simple_repeat Simple_repeat 5 58 0 9 1801 4875 101 32 4 chr1 159493731 159494425 -37701007 - Lx LINE L1 0 6654 5942 9 1801 557 177 0 22 chr1 159495170 159495292 -37700140 + B1F SINE Alu 2 120 0 9 1801 580 333 48 16 chr1 159495987 159496237 -37699195 - MLT1B LTR MaLR 0 390 133 9 1801 188 325 141 8 chr1 159496892 159497013 -37698419 + MIRb SINE MIR 33 169 -99 9 1801 309 346 29 53 chr1 159498980 159499151 -37696281 + MIR SINE MIR 30 196 -66 9 1801 247 307 79 0 chr1 159499282 159499383 -37696049 + LTR81C LTR ERV1? 2 110 -1043 9 1801 486 33 0 0 chr1 159500514 159500574 -37694858 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1801 1330 266 20 22 chr1 159501524 159501882 -37693550 + ORR1E LTR MaLR 3 359 0 2 1801 269 281 20 0 chr1 159502842 159502933 -37692499 - B1_Mur2 SINE Alu -10 139 45 3 1801 1167 273 103 77 chr1 159503041 159503720 -37691712 + RMER13A LTR ERVK 98 794 -66 4 1801 737 11 11 0 chr1 159503739 159503829 -37691603 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 5 1801 204 325 41 49 chr1 159505308 159505431 -37690001 - MIR SINE MIR -117 145 24 6 1801 3789 50 0 0 chr1 159505700 159506159 -37689273 - L1Md_F2 LINE L1 -491 6091 5633 7 1801 3911 67 0 4 chr1 159506160 159506652 -37688780 + L1Md_F2 LINE L1 6093 6582 0 7 1801 281 48 48 0 chr1 159508949 159508991 -37686441 + (TGAG)n Simple_repeat Simple_repeat 1 44 0 8 1801 6691 54 2 8 chr1 159509313 159510149 -37685283 - L1Md_F2 LINE L1 -2 6580 5750 9 1801 340 270 30 88 chr1 159511772 159511939 -37683493 - MLT1E1 LTR MaLR -9 645 519 1 1801 3149 43 8 8 chr1 159512061 159512455 -37682977 - L1Md_F3 LINE L1 0 6584 6191 1 1801 791 271 15 0 chr1 159512505 159512704 -37682728 - ID_B1 SINE B4 -1 223 22 1 1801 243 250 73 0 chr1 159512643 159512711 -37682721 - ID4 SINE ID -1 82 10 1 1801 1161 94 6 12 chr1 159512810 159512982 -37682450 + B2_Mm1t SINE B2 3 173 -20 1 1801 411 93 324 27 chr1 159513036 159513147 -37682285 + B2_Mm2 SINE B2 47 190 -5 1 1801 545 186 80 0 chr1 159513193 159513306 -37682126 - B1_Mur1 SINE Alu -20 129 8 1 1801 390 314 35 76 chr1 159513331 159513476 -37681956 - B3A SINE B2 -33 165 27 1 1801 251 304 25 0 chr1 159513615 159513694 -37681738 + MLT1L LTR MaLR 170 250 -360 1 1801 258 279 0 14 chr1 159513730 159513799 -37681633 + MLT1L LTR MaLR 432 499 -111 1 225 562 316 166 24 chr1 159514206 159514814 -37680618 - L2a LINE L2 -196 3230 2531 1 1802 252 0 0 0 chr1 159514878 159514906 -37680526 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1802 213 39 0 0 chr1 159515289 159515315 -37680117 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1802 256 347 46 33 chr1 159516372 159516524 -37678908 + MIR SINE MIR 79 232 -30 2 1802 274 279 0 0 chr1 159517544 159517605 -37677827 - L2b LINE L2 -4 3371 3311 2 1802 1071 82 0 0 chr1 159517702 159517848 -37677584 - B2_Mm2 SINE B2 -49 146 1 2 1802 194 250 155 39 chr1 159518218 159518347 -37677085 + MIR3 SINE MIR 37 180 -28 2 1802 243 146 0 0 chr1 159518785 159518826 -37676606 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1802 459 0 0 0 chr1 159518826 159518877 -37676555 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1802 247 342 92 25 chr1 159519221 159519341 -37676091 + MIRm SINE MIR 11 138 -138 2 1802 293 250 0 0 chr1 159520011 159520075 -37675357 - L2b LINE L2 0 3375 3312 2 1802 198 264 190 31 chr1 159520499 159520757 -37674675 + L2a LINE L2 3037 3335 -91 3 1802 189 229 112 20 chr1 159520841 159520942 -37674490 + MIR SINE MIR 106 217 -45 3 1802 2718 241 38 49 chr1 159521077 159521868 -37673564 - L1MA5 LINE L1 -64 6236 5455 3 1802 405 0 0 0 chr1 159522863 159522908 -37672524 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1802 270 0 0 0 chr1 159522908 159522937 -37672495 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1802 620 218 0 15 chr1 159522941 159523076 -37672356 - B3A SINE B2 -65 133 1 3 1802 227 227 179 0 chr1 159523757 159523824 -37671608 + MIRc SINE MIR 78 159 -117 3 1802 28 0 0 0 chr1 159524275 159524303 -37671129 + AT_rich Low_complexity Low_complexity 1 28 0 3 1802 338 344 69 0 chr1 159524347 159524478 -37670954 - MER5A DNA MER1_type -48 141 2 3 1802 421 295 48 16 chr1 159524661 159524847 -37670585 - MER33 DNA MER1_type -124 200 9 3 1802 1980 138 3 69 chr1 159526028 159526378 -37669054 - ORR1A4 LTR MaLR 0 329 3 4 1802 678 25 0 0 chr1 159527106 159527186 -37668246 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 4 1802 875 124 0 0 chr1 159527188 159527325 -37668107 - B1_Mur4 SINE Alu -5 145 9 4 1802 312 204 0 169 chr1 159527227 159527357 -37668075 - MT2B LTR ERVL -343 258 151 4 1802 2047 171 79 86 chr1 159528281 159528838 -37666594 + RLTR12A LTR ERVK 1 553 -15 4 1802 4274 23 0 0 chr1 159529232 159529717 -37665715 + L1Md_A LINE L1 6098 6582 0 4 1802 244 143 0 0 chr1 159529979 159530021 -37665411 + ORR1E LTR MaLR 1 42 -337 4 1802 1007 113 6 0 chr1 159530021 159530180 -37665252 - URR1A DNA MER1_type 0 226 67 4 1802 242 237 0 0 chr1 159530265 159530324 -37665108 + ORR1E LTR MaLR 94 152 -227 4 1802 388 305 49 14 chr1 159530325 159530468 -37664964 + MIRb SINE MIR 87 234 -34 4 1802 252 86 0 0 chr1 159530822 159530857 -37664575 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1802 276 300 57 24 chr1 159532941 159533064 -37662368 + ORR1E LTR MaLR 227 353 -6 4 1802 457 313 11 47 chr1 159534407 159534598 -37660834 + Tigger12 DNA MER2_type 8 191 -1768 5 1802 256 298 21 21 chr1 159534613 159534709 -37660723 + Tigger12 DNA MER2_type 1853 1948 -11 5 1802 227 303 85 74 chr1 159534758 159534947 -37660485 + Tigger15a DNA TcMar 9 199 -516 5 1802 594 28 0 0 chr1 159535150 159535222 -37660210 + (TTTTC)n Simple_repeat Simple_repeat 2 73 0 5 1802 229 220 153 48 chr1 159535236 159535360 -37660072 - L1M5 LINE L1 -314 5880 5744 5 1802 1288 281 24 12 chr1 159535809 159536234 -37659198 - L1MD3 LINE L1 -9 7986 7557 5 1802 590 65 0 11 chr1 159536234 159536327 -37659105 + (CAAAC)n Simple_repeat Simple_repeat 2 93 0 5 1802 387 0 0 0 chr1 159536327 159536370 -37659062 + (CAA)n Simple_repeat Simple_repeat 1 43 0 5 1802 1064 91 21 0 chr1 159536515 159536658 -37658774 - B1_Mus1 SINE Alu -1 147 2 5 1802 247 313 0 29 chr1 159536694 159536763 -37658669 - MLT1F1 LTR MaLR -450 119 53 5 1802 39675 51 1 21 chr1 159536897 159543517 -37651915 - L1Md_A LINE L1 0 6582 98 5 1802 1134 234 174 11 chr1 159543704 159544055 -37651377 + MTD LTR MaLR 1 408 -11 6 1802 800 291 77 18 chr1 159544238 159544652 -37650780 + MLT1C LTR MaLR 24 454 -13 6 1802 332 302 66 24 chr1 159544684 159544850 -37650582 - L1MC LINE L1 -1439 4707 4535 6 1802 1903 113 6 59 chr1 159545268 159545607 -37649825 - ORR1A4 LTR MaLR -8 321 1 6 1802 255 309 126 94 chr1 159545680 159546030 -37649402 - L1MD3 LINE L1 -597 7445 7085 5 1802 277 248 61 95 chr1 159546201 159546348 -37649084 + MIR SINE MIR 114 255 -7 6 1802 393 75 0 0 chr1 159547465 159547518 -37647914 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1802 366 227 32 54 chr1 159547645 159547738 -37647694 + Lx8 LINE L1 7227 7317 -156 6 1802 416 324 0 7 chr1 159547873 159548022 -37647410 + HAL1-2a_MD LINE L1 2345 2492 -532 6 1802 764 21 11 0 chr1 159548073 159548167 -37647265 + (TTCTC)n Simple_repeat Simple_repeat 2 96 0 6 1802 206 211 0 0 chr1 159548167 159548205 -37647227 + CT-rich Low_complexity Low_complexity 3 40 0 6 1802 547 226 22 45 chr1 159548206 159548340 -37647092 - B1_Mus1 SINE Alu -7 141 11 7 1802 351 0 0 0 chr1 159548355 159548394 -37647038 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1802 850 142 107 6 chr1 159548397 159548574 -37646858 - B2_Mm2 SINE B2 0 195 1 7 1802 298 294 85 23 chr1 159548650 159548779 -37646653 - MER52-int LTR ERV1 -1 7090 6954 7 1802 413 255 88 0 chr1 159550000 159550102 -37645330 + Lx7 LINE L1 7259 7369 -327 7 1802 28 61 0 0 chr1 159550102 159550151 -37645281 + AT_rich Low_complexity Low_complexity 1 49 0 7 1802 430 192 157 7 chr1 159550185 159550332 -37645100 + Lx7 LINE L1 7367 7535 -161 7 1802 762 79 9 0 chr1 159550340 159550454 -37644978 - B1_Mus1 SINE Alu 0 148 34 7 1802 710 194 13 0 chr1 159550499 159550654 -37644778 + CT-rich Low_complexity Low_complexity 4 160 0 7 1802 461 104 0 49 chr1 159550739 159550820 -37644612 - L1_Mus2 LINE L1 0 6566 6490 7 1802 773 154 0 22 chr1 159550814 159550953 -37644479 + Lx7 LINE L1 7561 7696 0 7 1802 261 0 0 0 chr1 159552050 159552079 -37643353 + (TCG)n Simple_repeat Simple_repeat 3 31 0 7 1802 383 267 30 8 chr1 159552805 159552937 -37642495 - RLTR42-int LTR ERVK -4255 1267 1133 8 1802 700 154 41 20 chr1 159553558 159553704 -37641728 - RMER4A LTR ERVK -10 456 308 8 1802 2661 147 56 5 chr1 159553706 159554149 -37641283 - RMER4A LTR ERVK 0 466 1 8 1802 414 100 0 0 chr1 159554297 159554357 -37641075 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 8 1802 377 280 95 27 chr1 159555737 159555884 -37639548 - RLTR42-int LTR ERVK -3727 1795 1639 8 1802 584 217 33 0 chr1 159556067 159556187 -37639245 - RLTR14 LTR ERV1 0 382 259 8 1802 709 194 29 0 chr1 159556187 159556326 -37639106 - B1_Mur4 SINE Alu -6 144 2 8 1802 1325 127 115 14 chr1 159556326 159556570 -37638862 - RLTR14 LTR ERV1 -106 276 5 8 1802 413 160 9 28 chr1 159557540 159557649 -37637783 + GA-rich Low_complexity Low_complexity 2 108 0 8 1802 1221 106 0 0 chr1 159557649 159557829 -37637603 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1802 459 0 0 0 chr1 159557961 159558012 -37637420 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1802 1206 42 7 0 chr1 159558072 159558216 -37637216 - B1_Mus1 SINE Alu -3 145 1 9 1802 4081 165 63 29 chr1 159558278 159558398 -37637034 - RMER1A Other Other -6 1024 876 9 1802 486 0 0 0 chr1 159558398 159558452 -37636980 + (CCA)n Simple_repeat Simple_repeat 1 54 0 9 1802 4081 216 51 30 chr1 159558452 159559914 -37635518 - RMER1A Other Other -155 875 1 9 1802 21 0 0 0 chr1 159560156 159560177 -37635255 + AT_rich Low_complexity Low_complexity 1 21 0 9 1802 22 0 0 0 chr1 159560347 159560369 -37635063 + AT_rich Low_complexity Low_complexity 1 22 0 9 1802 259 303 44 36 chr1 159560679 159560816 -37634616 + Tigger15a DNA TcMar 566 703 -12 9 1802 411 252 95 9 chr1 159561253 159561369 -37634063 + B1F1 SINE Alu 2 127 -22 9 1802 229 297 0 0 chr1 159561369 159561433 -37633999 + (CCCA)n Simple_repeat Simple_repeat 1 64 0 9 1802 405 0 0 0 chr1 159561459 159561504 -37633928 + (CCAA)n Simple_repeat Simple_repeat 3 47 0 9 1802 281 292 0 0 chr1 159561527 159561592 -37633840 - MLT1H LTR MaLR -347 202 138 1 1802 1995 192 76 5 chr1 159561593 159561986 -37633446 + MTC LTR MaLR 1 421 0 1 1802 649 260 65 6 chr1 159562281 159562451 -37632981 + B3A SINE B2 2 181 -17 1 1802 495 0 0 0 chr1 159562461 159562516 -37632916 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1802 286 366 16 0 chr1 159564915 159565038 -37630394 - MIR SINE MIR -110 152 28 1 1802 263 296 113 26 chr1 159565488 159565702 -37629730 - MIRb SINE MIR -36 232 1 1 1802 227 327 12 91 chr1 159567044 159567133 -37628299 + L3 LINE CR1 3197 3278 -1211 1 1802 204 40 0 0 chr1 159567133 159567158 -37628274 + (TTC)n Simple_repeat Simple_repeat 2 26 0 1 1802 227 327 12 91 chr1 159567158 159567233 -37628199 + L3 LINE CR1 3279 3348 -1141 1 1802 193 243 101 55 chr1 159567405 159567514 -37627918 - MIR3 SINE MIR -7 201 88 1 1802 220 328 16 57 chr1 159567778 159567901 -37627531 - MIR SINE MIR -68 140 23 1 1802 455 281 0 17 chr1 159568104 159568210 -37627222 + ID_B1 SINE B4 108 213 -11 1 1802 969 34 0 0 chr1 159568210 159568327 -37627105 + (CAAAC)n Simple_repeat Simple_repeat 2 118 0 1 1802 323 210 0 12 chr1 159568371 159568453 -37626979 - RCHARR1 DNA MER1_type -146 828 748 1 1802 1362 296 38 2 chr1 159568450 159568903 -37626529 - RCHARR1 DNA MER1_type -505 469 1 1 1802 1467 118 252 40 chr1 159569456 159569637 -37625795 - L1_Mur2 LINE L1 -310 5567 5358 1 1802 3948 50 0 6 chr1 159569637 159570118 -37625314 - L1Md_F2 LINE L1 -6 6576 6099 1 1802 1467 118 252 40 chr1 159570118 159570261 -37625171 - L1_Mur2 LINE L1 -520 5357 5174 1 1802 3099 139 6 4 chr1 159570264 159570748 -37624684 + L1_Mur2 LINE L1 4468 4952 -925 1 1802 735 167 0 0 chr1 159570863 159571001 -37624431 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 1802 635 268 62 16 chr1 159571017 159571210 -37624222 - B3 SINE B2 -12 204 3 1 1802 5751 62 4 0 chr1 159571211 159571966 -37623466 + L1_Mus2 LINE L1 5842 6566 0 1 1802 644 280 30 93 chr1 159572000 159572236 -37623196 - B4 SINE B4 -71 221 1 1 1802 3095 194 48 25 chr1 159572256 159572927 -37622505 - Lx9 LINE L1 -1 7643 6958 1 1802 264 321 9 28 chr1 159573577 159573686 -37621746 - MIRb SINE MIR -60 208 102 1 1802 468 0 0 0 chr1 159574687 159574739 -37620693 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1802 211 276 40 0 chr1 159574877 159574953 -37620479 + CT-rich Low_complexity Low_complexity 1 79 0 1 1802 474 49 0 0 chr1 159575716 159575777 -37619655 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1802 217 306 0 0 chr1 159576045 159576107 -37619325 - MIR SINE MIR -62 146 85 1 1802 542 252 45 0 chr1 159576137 159576292 -37619140 + L1MB8 LINE L1 5567 5728 -456 1 1802 642 231 102 87 chr1 159576304 159576569 -37618863 + B4A SINE B4 1 269 -23 1 1802 323 119 15 0 chr1 159576571 159576638 -37618794 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1802 625 203 11 0 chr1 159576677 159576854 -37618578 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1802 921 259 51 54 chr1 159577027 159577362 -37618070 + ORR1E LTR MaLR 26 359 0 1 1802 240 193 17 34 chr1 159577607 159577666 -37617766 + L1MB8 LINE L1 6055 6112 -66 1 1802 999 68 0 0 chr1 159578190 159578322 -37617110 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1802 214 283 19 138 chr1 159578877 159579037 -37616395 + MER5B DNA MER1_type 14 154 -24 1 1802 501 97 0 0 chr1 159579154 159579226 -37616206 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 1 1802 226 266 74 11 chr1 159579272 159579367 -37616065 - Lx8 LINE L1 -1285 6188 6088 1 1802 761 242 103 0 chr1 159581405 159581570 -37613862 + B3A SINE B2 1 182 -16 1 1802 180 158 0 0 chr1 159581571 159581609 -37613823 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1 1802 193 368 54 39 chr1 159581886 159582016 -37613416 + MIRc SINE MIR 93 224 -44 1 1802 610 317 84 30 chr1 159582311 159582646 -37612786 - MLT1E2 LTR MaLR -8 619 267 1 1802 552 161 17 28 chr1 159582866 159583045 -37612387 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 1 1802 182 205 0 0 chr1 159583365 159583404 -37612028 + L2c LINE L2 3340 3378 -9 1 1802 221 235 0 42 chr1 159583793 159583839 -37611593 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 1 1802 555 16 0 0 chr1 159583839 159583903 -37611529 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 1802 221 235 0 42 chr1 159583903 159583927 -37611505 + (CATATA)n Simple_repeat Simple_repeat 6 29 0 1 1802 821 240 108 67 chr1 159583941 159584373 -37611059 + RMER2 LTR ERV1 1 540 -27 1 1802 342 255 81 9 chr1 159584523 159584634 -37610798 - L1MA4 LINE L1 -362 5938 5820 1 1802 1049 247 5 18 chr1 159584635 159584858 -37610574 - ID_B1 SINE B4 0 224 5 1 1802 522 277 45 48 chr1 159585052 159585396 -37610036 - L1MA4 LINE L1 -196 5984 5641 1 1802 581 291 118 5 chr1 159585404 159585625 -37609807 - L1MA4 LINE L1 -533 5764 5519 1 1802 191 339 31 0 chr1 159586660 159586725 -37608707 - MIRm SINE MIR -5 271 205 1 1802 28 0 0 0 chr1 159588027 159588055 -37607377 + AT_rich Low_complexity Low_complexity 1 28 0 1 1802 755 284 32 46 chr1 159588057 159588068 -37607364 - B4 SINE B4 -13 279 271 1 1802 441 0 0 0 chr1 159588068 159588117 -37607315 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1802 210 71 0 0 chr1 159588117 159588144 -37607288 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1802 755 284 32 46 chr1 159588144 159588412 -37607020 - B4 SINE B4 -22 270 4 1 1802 306 282 17 25 chr1 159588485 159588605 -37606827 - L2a LINE L2 -40 3386 3268 1 1802 669 86 0 0 chr1 159588632 159588725 -37606707 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 1 1802 553 292 160 9 chr1 159588747 159589079 -37606353 - L2a LINE L2 -771 2648 2267 1 1802 388 333 0 0 chr1 159589312 159589432 -37606000 + MTEb LTR MaLR 257 376 -3 1 1802 490 289 192 8 chr1 159590011 159590245 -37605187 - RMER15 LTR ERVL -16 559 283 1 1802 1636 279 66 31 chr1 159590550 159591067 -37604365 - RMER15-int LTR ERVL -113 4886 4352 1 1802 4672 301 74 43 chr1 159591116 159592683 -37602749 - RMER15-int LTR ERVL -3056 1943 308 1 1802 423 0 0 0 chr1 159592683 159592730 -37602702 + (CTA)n Simple_repeat Simple_repeat 1 47 0 1 1802 4672 301 74 43 chr1 159592730 159593042 -37602390 - RMER15-int LTR ERVL -4692 307 5 1 1802 302 356 9 0 chr1 159593042 159593157 -37602275 - RMER15 LTR ERVL -1 574 459 1 1802 614 376 41 15 chr1 159593681 159594024 -37601408 + MLT1I LTR MaLR 26 377 -34 1 1802 8721 35 0 2 chr1 159594036 159595492 -37599940 - L1Md_F3 LINE L1 -1 6583 5131 1 1802 877 246 121 15 chr1 159596400 159596739 -37598693 - L1M5 LINE L1 -422 5702 5329 1 1802 225 0 0 0 chr1 159597808 159597833 -37597599 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1802 5447 101 19 13 chr1 159598243 159599032 -37596400 + Lx LINE L1 5855 6648 -6 1 1802 279 140 0 0 chr1 159599527 159599577 -37595855 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1802 1176 90 0 0 chr1 159600345 159600512 -37594920 + (CAAAC)n Simple_repeat Simple_repeat 2 168 0 1 1802 21 36 0 0 chr1 159600515 159600543 -37594889 + AT_rich Low_complexity Low_complexity 1 28 0 1 1802 39 60 0 0 chr1 159600829 159600896 -37594536 + AT_rich Low_complexity Low_complexity 1 67 0 1 1802 249 33 0 0 chr1 159600936 159600966 -37594466 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1802 540 228 26 52 chr1 159601282 159601435 -37593997 + B1_Mur1 SINE Alu 1 149 0 1 1802 727 299 67 51 chr1 159601467 159601841 -37593591 - MLT2C1 LTR ERVL -17 380 1 1 1802 195 378 132 0 chr1 159602613 159602764 -37592668 + MIR SINE MIR 14 184 -78 1 1802 441 0 0 0 chr1 159604840 159604889 -37590543 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1 1802 285 29 0 0 chr1 159606287 159606321 -37589111 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1802 719 273 47 42 chr1 159606387 159606601 -37588831 - B3A SINE B2 0 216 2 1 1802 1010 305 64 94 chr1 159606605 159607086 -37588346 + MLT1G1 LTR MaLR 103 569 -10 1 1802 253 310 0 0 chr1 159607169 159607240 -37588192 + GA-rich Low_complexity Low_complexity 1 71 0 1 1802 588 14 0 0 chr1 159607244 159607313 -37588119 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 1802 210 118 0 0 chr1 159607757 159607791 -37587641 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1802 2150 295 9 40 chr1 159607791 159608458 -37586974 + Lx8 LINE L1 6257 6902 -571 1 1802 189 242 106 61 chr1 159608533 159608599 -37586833 - MIRc SINE MIR -82 186 118 1 1802 802 316 45 32 chr1 159608631 159608945 -37586487 + Lx8 LINE L1 6949 7266 -207 1 1802 695 186 7 7 chr1 159608958 159609099 -37586333 - B1_Mur4 SINE Alu -1 149 9 1 1802 31 26 0 0 chr1 159609305 159609343 -37586089 + AT_rich Low_complexity Low_complexity 1 38 0 1 1802 2279 127 35 8 chr1 159610083 159610457 -37584975 + ORR1B1 LTR MaLR 3 386 -8 1 1802 1060 154 29 5 chr1 159610457 159610665 -37584767 - RMER15 LTR ERVL -86 489 277 1 1802 183 278 161 36 chr1 159610830 159610942 -37584490 - MIRc SINE MIR -26 242 117 1 1802 213 39 0 0 chr1 159613424 159613450 -37581982 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1802 189 0 0 0 chr1 159613540 159613561 -37581871 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1802 332 318 149 10 chr1 159613635 159613829 -37581603 + MIRb SINE MIR 39 259 -9 1 1802 256 277 0 0 chr1 159615687 159615752 -37579680 - ORR1E LTR MaLR 0 359 295 1 1802 509 80 0 13 chr1 159615800 159615876 -37579556 + (GGGAGA)n Simple_repeat Simple_repeat 4 78 0 1 1802 596 240 24 0 chr1 159616057 159616182 -37579250 + B1_Mur1 SINE Alu 3 130 -19 1 1802 248 0 0 30 chr1 159616189 159616222 -37579210 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1802 260 227 30 147 chr1 159616349 159616495 -37578937 + MIRc SINE MIR 100 222 -46 1 1802 273 247 157 24 chr1 159617326 159617409 -37578023 + MIRb SINE MIR 22 115 -153 1 1802 183 80 0 0 chr1 159617750 159617775 -37577657 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1802 1052 248 108 7 chr1 159618556 159618844 -37576588 - Lx2B LINE L1 -10 6990 6674 1 1802 1902 170 8 40 chr1 159618871 159619244 -37576188 - ORR1B2 LTR MaLR 0 367 7 1 1802 183 80 0 0 chr1 159619515 159619540 -37575892 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1802 231 372 112 19 chr1 159619648 159620059 -37575373 + L2 LINE L2 1995 2443 -976 1 1802 4112 121 16 86 chr1 159620411 159621218 -37574214 - RMER17A LTR ERVK 0 751 1 1 1802 664 203 137 19 chr1 159622735 159622890 -37572542 + MTD LTR MaLR 14 187 -232 2 1802 1846 164 39 47 chr1 159622890 159623000 -37572432 + ORR1C2 LTR MaLR 1 98 -286 2 1802 1185 201 4 21 chr1 159623000 159623234 -37572198 + Lx6 LINE L1 7227 7456 -4 2 1802 1846 164 39 47 chr1 159623234 159623507 -37571925 + ORR1C2 LTR MaLR 99 381 -3 2 1802 2319 201 31 57 chr1 159623507 159624120 -37571312 - ORR1D1-int LTR MaLR -911 598 2 2 1802 673 272 45 14 chr1 159624133 159624353 -37571079 + MTD LTR MaLR 193 419 0 2 1802 5098 123 7 5 chr1 159624466 159625202 -37570230 - RMER19A LTR ERVK 0 737 1 2 1802 207 0 0 0 chr1 159625844 159625867 -37569565 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1802 490 197 160 24 chr1 159625906 159626031 -37569401 + B1_Mur4 SINE Alu 1 142 -8 2 1802 437 209 157 27 chr1 159626136 159626285 -37569147 - ORR1D1 LTR MaLR -2 382 176 2 1802 321 89 0 0 chr1 159626285 159626330 -37569102 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1802 343 225 290 34 chr1 159626330 159626387 -37569045 - ORR1D1 LTR MaLR -209 175 123 2 1802 776 237 0 53 chr1 159626676 159626863 -37568569 + B4 SINE B4 81 257 -35 2 1802 777 118 0 0 chr1 159626878 159626997 -37568435 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 1802 195 129 0 0 chr1 159627079 159627110 -37568322 + (TTCG)n Simple_repeat Simple_repeat 2 32 0 2 1802 3218 152 234 7 chr1 159627899 159628636 -37566796 + RMER19B LTR ERVK 1 890 -12 2 1802 876 294 22 11 chr1 159628671 159628946 -37566486 + B4A SINE B4 2 279 -13 2 1802 231 386 79 30 chr1 159629662 159629865 -37565567 + L2 LINE L2 2639 2851 -568 2 1802 336 155 0 0 chr1 159629944 159630015 -37565417 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1802 388 229 12 12 chr1 159630024 159630108 -37565324 - RLTR20B3 LTR ERVK -9 568 485 2 1802 390 21 0 0 chr1 159630108 159630155 -37565277 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1802 515 29 14 0 chr1 159630156 159630225 -37565207 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1802 208 333 23 11 chr1 159631388 159631476 -37563956 + MIRb SINE MIR 39 127 -141 2 1802 412 175 0 20 chr1 159631556 159631655 -37563777 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1802 331 198 71 6 chr1 159631675 159631843 -37563589 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1802 453 19 0 0 chr1 159631846 159631900 -37563532 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2 1802 1845 162 33 30 chr1 159631900 159631965 -37563467 - ORR1C2 LTR MaLR -15 369 310 2 1802 2060 158 13 47 chr1 159631965 159632345 -37563087 + ORR1B2 LTR MaLR 1 367 0 2 1802 1845 162 33 30 chr1 159632345 159632647 -37562785 - ORR1C2 LTR MaLR -75 309 1 2 1802 333 188 12 12 chr1 159632647 159632728 -37562704 - L1MB4 LINE L1 -25 6155 6075 2 1802 238 289 164 0 chr1 159634364 159634468 -37560964 - MER5A DNA MER1_type -19 170 50 2 1802 34 72 0 0 chr1 159634783 159634852 -37560580 + AT_rich Low_complexity Low_complexity 1 69 0 2 1802 615 216 435 18 chr1 159635293 159635521 -37559911 - MTEa LTR MaLR -2 377 55 2 1802 273 29 0 0 chr1 159636169 159636203 -37559229 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1802 780 236 119 8 chr1 159636208 159636443 -37558989 - B4 SINE B4 -29 263 3 2 1802 215 333 0 14 chr1 159636521 159636591 -37558841 + CT-rich Low_complexity Low_complexity 2 70 0 2 1802 225 0 0 0 chr1 159637005 159637030 -37558402 + (CCTG)n Simple_repeat Simple_repeat 1 25 0 2 1802 717 12 0 0 chr1 159637082 159637164 -37558268 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 2 1802 213 0 26 51 chr1 159637421 159637460 -37557972 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1802 3852 28 5 0 chr1 159637736 159638170 -37557262 + RLTR10C LTR ERVK 1 436 0 2 1802 285 29 0 0 chr1 159638360 159638394 -37557038 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1802 372 227 0 0 chr1 159639755 159639843 -37555589 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1802 287 261 23 0 chr1 159640154 159640242 -37555190 + MIRb SINE MIR 49 138 -130 2 1802 293 250 0 0 chr1 159640450 159640514 -37554918 + RMER15 LTR ERVL 383 446 -129 2 1802 958 271 114 12 chr1 159641206 159641531 -37553901 - MLT1A0 LTR MaLR -2 363 6 2 1802 1178 210 103 70 chr1 159642740 159643099 -37552333 - MTEb LTR MaLR -8 371 1 2 1802 201 132 0 0 chr1 159643160 159643198 -37552234 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1802 200 273 14 57 chr1 159643295 159643365 -37552067 + MIRm SINE MIR 109 175 -101 2 1802 966 122 0 0 chr1 159644574 159644754 -37550678 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1802 1112 61 0 12 chr1 159644786 159644953 -37550479 + (TCTA)n Simple_repeat Simple_repeat 4 168 0 2 1803 597 248 21 14 chr1 159646245 159646388 -37549044 - B1F SINE Alu -2 147 4 2 1803 408 211 7 13 chr1 159646758 159646912 -37548520 + (TG)n Simple_repeat Simple_repeat 2 154 0 2 1803 546 196 0 27 chr1 159646947 159647131 -37548301 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1803 461 285 79 132 chr1 159647138 159647338 -37548094 - B4A SINE B4 -5 287 97 2 1803 524 216 127 73 chr1 159647338 159647543 -37547889 - B3 SINE B2 0 216 1 2 1803 461 285 79 132 chr1 159647543 159647645 -37547787 - B4A SINE B4 -196 96 1 2 1803 522 119 0 0 chr1 159648242 159648326 -37547106 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 2 1803 251 306 100 35 chr1 159648903 159649103 -37546329 + LTR79 LTR ERVL 315 527 0 2 1803 285 145 0 0 chr1 159649434 159649496 -37545936 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1803 567 309 13 0 chr1 159649522 159649671 -37545761 - B4A SINE B4 -136 156 6 2 1803 1157 58 0 0 chr1 159650830 159650969 -37544463 + B1_Mus1 SINE Alu 3 141 -7 2 1803 417 86 0 0 chr1 159650972 159651030 -37544402 + (TAAG)n Simple_repeat Simple_repeat 2 59 0 2 1803 29 0 0 0 chr1 159651033 159651062 -37544370 + AT_rich Low_complexity Low_complexity 1 29 0 2 1803 31 0 0 0 chr1 159652345 159652376 -37543056 + AT_rich Low_complexity Low_complexity 1 31 0 2 1803 282 160 0 0 chr1 159652792 159652842 -37542590 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1803 570 67 0 0 chr1 159655280 159655355 -37540077 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 1803 1370 54 0 14 chr1 159655355 159655782 -37539650 + (GGA)n Simple_repeat Simple_repeat 1 421 0 2 1803 1446 216 52 26 chr1 159655798 159656141 -37539291 - RMER1C Other Other -145 1197 846 2 1803 291 247 35 58 chr1 159656180 159656266 -37539166 - RMER1C Other Other -1217 125 42 2 1803 180 0 0 0 chr1 159656575 159656595 -37538837 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1803 546 173 0 60 chr1 159657650 159657757 -37537675 + B1_Mur3 SINE Alu 40 142 -7 2 1803 3768 66 4 12 chr1 159657757 159658250 -37537182 + L1Md_F2 LINE L1 6094 6582 0 2 1803 210 128 0 0 chr1 159658286 159658325 -37537107 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 2 1803 37 0 0 0 chr1 159659019 159659056 -37536376 + AT_rich Low_complexity Low_complexity 1 37 0 2 1803 234 360 33 38 chr1 159661187 159661398 -37534034 + MIRb SINE MIR 1 210 -58 2 1803 27 0 0 0 chr1 159662020 159662047 -37533385 + AT_rich Low_complexity Low_complexity 1 27 0 2 1803 347 254 123 0 chr1 159662992 159663114 -37532318 - ID_B1 SINE B4 0 224 88 2 1803 354 191 126 94 chr1 159664872 159664999 -37530433 - L1ME4a LINE L1 -6 6118 5988 2 1803 1002 253 75 47 chr1 159665327 159665692 -37529740 + MTE2b LTR MaLR 1 360 -19 2 1803 180 111 0 0 chr1 159666066 159666093 -37529339 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2 1803 192 125 0 0 chr1 159667056 159667088 -37528344 + (ATG)n Simple_repeat Simple_repeat 1 32 0 2 1803 1319 162 24 38 chr1 159667339 159667839 -37527593 + RMER17C LTR ERVK 1 410 0 2 1803 265 338 18 73 chr1 159667886 159668106 -37527326 + L2b LINE L2 2946 3153 -222 2 1803 221 316 20 10 chr1 159668196 159668296 -37527136 + MIRc SINE MIR 43 147 -121 2 1803 3554 42 2 10 chr1 159669677 159670087 -37525345 - MTB_Mm LTR MaLR 0 407 1 2 1803 250 362 109 58 chr1 159670093 159670541 -37524891 + LTR33 LTR ERVL 37 507 -8 2 1803 185 297 38 75 chr1 159672129 159672209 -37523223 - MIRm SINE MIR -75 201 125 2 1803 473 261 61 0 chr1 159672691 159672806 -37522626 + B4A SINE B4 145 266 -26 2 1803 2605 131 23 13 chr1 159673056 159673442 -37521990 + ORR1B1 LTR MaLR 5 394 0 2 1803 7290 182 88 4 chr1 159673442 159674835 -37520597 + ORR1B1-int LTR MaLR 1 1509 0 2 1803 2329 173 31 3 chr1 159674835 159675218 -37520214 + ORR1B1 LTR MaLR 1 394 0 2 1803 231 284 32 114 chr1 159675656 159675779 -37519653 + L2c LINE L2 3256 3368 -19 2 1803 180 152 0 0 chr1 159676046 159676079 -37519353 + CT-rich Low_complexity Low_complexity 3 35 0 2 1803 393 39 0 0 chr1 159676986 159677037 -37518395 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1803 867 141 193 5 chr1 159677463 159677655 -37517777 + Lx9 LINE L1 7413 7640 -4 2 1803 21 0 0 0 chr1 159677657 159677678 -37517754 + AT_rich Low_complexity Low_complexity 1 21 0 2 1803 657 0 0 0 chr1 159677927 159678000 -37517432 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 2 1803 1004 151 0 6 chr1 159678001 159678181 -37517251 + CT-rich Low_complexity Low_complexity 2 180 0 2 1803 202 372 8 47 chr1 159678607 159678734 -37516698 + MIRb SINE MIR 133 254 -14 2 1803 202 209 0 23 chr1 159678993 159679037 -37516395 - L2b LINE L2 -3 3372 3330 2 1803 468 327 87 6 chr1 159680826 159681120 -37514312 - MLT1H-int LTR MaLR -9 1400 1049 2 1803 387 73 0 0 chr1 159681259 159681314 -37514118 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1803 1520 312 152 53 chr1 159681405 159682312 -37513120 - MLT1H-int LTR MaLR -412 997 1 2 1803 249 108 0 0 chr1 159682794 159682831 -37512601 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1803 732 315 171 8 chr1 159682834 159683074 -37512358 - B4 SINE B4 -12 280 2 2 1803 343 312 45 30 chr1 159683209 159683341 -37512091 + MLT1J LTR MaLR 140 273 -239 2 1803 27 29 0 0 chr1 159683796 159683830 -37511602 + AT_rich Low_complexity Low_complexity 1 34 0 2 1803 518 248 0 0 chr1 159684057 159684158 -37511274 - PB1D10 SINE Alu 0 117 17 2 1803 262 262 99 77 chr1 159684082 159684173 -37511259 - B4A SINE B4 -122 170 78 2 1803 187 320 65 37 chr1 159684462 159684569 -37510863 - L2c LINE L2 0 3387 3278 2 1803 449 289 21 7 chr1 159684692 159684835 -37510597 - HAL1-2a_MD LINE L1 -534 2490 2346 2 1803 225 191 21 0 chr1 159684835 159684882 -37510550 + MIR SINE MIR 160 207 -55 2 1803 656 312 17 17 chr1 159684942 159685180 -37510252 - MIRb SINE MIR -16 252 15 3 1803 645 105 0 0 chr1 159685908 159686003 -37509429 + (TATG)n Simple_repeat Simple_repeat 2 96 0 3 1803 270 206 0 0 chr1 159687579 159687652 -37507780 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1803 198 0 0 0 chr1 159687717 159687739 -37507693 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 3 1803 303 312 66 36 chr1 159688193 159688359 -37507073 - L1M5 LINE L1 -419 5821 5651 3 1803 218 235 20 0 chr1 159688510 159688561 -37506871 + (CTATT)n Simple_repeat Simple_repeat 3 54 0 3 1803 642 256 83 25 chr1 159688574 159688778 -37506654 - B3 SINE B2 0 216 1 3 1803 227 294 18 97 chr1 159688792 159688905 -37506527 - Charlie9 DNA MER1_type -2649 108 5 3 1803 188 0 74 0 chr1 159689608 159689635 -37505797 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1803 1307 41 0 7 chr1 159689639 159689788 -37505644 - B1_Mus1 SINE Alu 0 148 1 3 1803 1212 59 0 0 chr1 159689807 159689960 -37505472 - L1Md_F2 LINE L1 0 6582 6430 3 1803 385 247 22 25 chr1 159689976 159690141 -37505291 - L1MEe LINE L1 -4645 1912 1709 3 1803 630 113 0 0 chr1 159690573 159690670 -37504762 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 1803 221 174 22 0 chr1 159690783 159690829 -37504603 + CT-rich Low_complexity Low_complexity 2 48 0 3 1803 21 36 0 0 chr1 159691224 159691252 -37504180 + AT_rich Low_complexity Low_complexity 1 28 0 3 1803 468 304 11 107 chr1 159691768 159691945 -37503487 - RSINE1 SINE B4 -2 163 4 3 1803 253 317 151 29 chr1 159692291 159692463 -37502969 + MIRb SINE MIR 15 207 -61 3 1803 935 328 10 27 chr1 159693003 159693298 -37502134 - B4 SINE B4 -2 290 1 3 1803 304 202 48 128 chr1 159693795 159693920 -37501512 + MER5A DNA MER1_type 53 167 -22 3 1803 433 251 0 67 chr1 159694271 159694398 -37501034 + MER5B DNA MER1_type 70 177 -1 3 1803 3825 197 39 59 chr1 159696572 159697388 -37498044 - RMER13B LTR ERVK -104 804 5 3 1803 1334 242 160 6 chr1 159697671 159698033 -37497399 + MTD LTR MaLR 1 418 -1 3 1803 246 174 0 0 chr1 159699445 159699491 -37495941 + GA-rich Low_complexity Low_complexity 3 48 0 3 1803 379 312 91 74 chr1 159700216 159700514 -37494918 - ORSL-2b DNA Tip100 -155 353 51 3 1803 237 316 34 17 chr1 159702372 159702491 -37492941 + Lx8 LINE L1 7039 7159 -314 3 1803 343 253 239 11 chr1 159702615 159702791 -37492641 + RMER15 LTR ERVL 336 551 -24 3 1803 647 211 187 0 chr1 159702791 159703000 -37492432 - L1M2 LINE L1 -2430 3713 3466 3 1803 376 256 11 13 chr1 159703019 159703125 -37492307 - Lx8 LINE L1 -894 6802 6699 3 1803 21 0 0 0 chr1 159703864 159703885 -37491547 + AT_rich Low_complexity Low_complexity 1 21 0 3 1803 364 264 44 0 chr1 159705065 159705156 -37490276 - MIRb SINE MIR -70 198 104 3 1803 182 409 0 0 chr1 159707395 159707466 -37487966 + L2a LINE L2 3340 3410 -16 3 1803 411 255 64 69 chr1 159708365 159708567 -37486865 - CR1_Mam LINE CR1 -1219 985 785 3 1803 350 207 47 8 chr1 159708568 159708685 -37486747 - L1M4 LINE L1 -3193 2953 2839 3 1803 388 322 92 13 chr1 159708715 159708954 -37486478 - Lx8 LINE L1 -4 7469 7212 3 1803 389 196 20 10 chr1 159708987 159709085 -37486347 - L1M4 LINE L1 -3309 2837 2739 3 1803 662 178 165 45 chr1 159709425 159709625 -37485807 - MARNA DNA Mariner -343 243 20 3 1803 207 100 0 0 chr1 159709943 159709973 -37485459 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 3 1803 803 291 55 27 chr1 159710933 159711226 -37484206 + Lx8 LINE L1 7173 7473 0 3 1803 27 62 0 0 chr1 159711277 159711325 -37484107 + AT_rich Low_complexity Low_complexity 1 48 0 3 1803 2897 40 3 0 chr1 159711343 159711671 -37483761 - L1Md_F2 LINE L1 0 6582 6254 3 1803 2960 296 106 28 chr1 159713062 159714190 -37481242 - Lx8 LINE L1 -30 7443 6227 3 1803 4889 158 19 50 chr1 159714190 159715086 -37480346 + RLTR25A LTR ERVK 1 874 -229 3 1803 630 0 0 0 chr1 159715086 159715156 -37480276 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1803 4889 195 75 84 chr1 159715156 159715291 -37480141 + RLTR25A LTR ERVK 875 1028 0 3 1803 1809 291 149 53 chr1 159715291 159715709 -37479723 - Lx8 LINE L1 -1241 6232 5702 3 1803 306 0 0 0 chr1 159715709 159715743 -37479689 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1803 1809 275 80 131 chr1 159715743 159716103 -37479329 - Lx8 LINE L1 -146 5701 5338 3 1803 2237 216 96 53 chr1 159716103 159716689 -37478743 + RMER19C LTR ERVK 1 611 0 3 1803 1809 275 80 131 chr1 159716689 159717567 -37477865 - Lx8 LINE L1 -510 5337 4555 3 1803 234 284 47 47 chr1 159717661 159717746 -37477686 + MER58B DNA MER1_type 176 260 -81 3 1803 543 31 0 0 chr1 159717911 159717976 -37477456 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1803 1231 82 7 0 chr1 159718253 159718400 -37477032 - B1_Mus1 SINE Alu 0 148 1 3 1803 310 231 192 0 chr1 159718400 159718504 -37476928 + ID_B1 SINE B4 100 223 -1 3 1803 227 276 76 30 chr1 159718509 159718640 -37476792 - L1M5 LINE L1 -276 5918 5782 3 1803 846 299 61 24 chr1 159718745 159719156 -37476276 - L1M5 LINE L1 -515 5679 5254 3 1803 7042 179 28 49 chr1 159719336 159721008 -37474424 + RMER12B LTR ERVK 6 1530 -42 3 1803 305 200 0 62 chr1 159721023 159721087 -37474345 + RMER12B LTR ERVK 1340 1399 -5 3 1803 346 195 100 57 chr1 159721190 159721322 -37474110 - ORR1E LTR MaLR -18 361 217 3 1803 421 323 111 51 chr1 159721645 159722059 -37473373 - L1M5 LINE L1 -1413 4733 4295 3 1803 281 170 53 11 chr1 159722249 159722344 -37473088 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 1803 300 111 0 0 chr1 159722419 159722464 -37472968 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 3 1803 334 330 48 73 chr1 159722467 159722673 -37472759 - L1M5 LINE L1 -2373 3773 3573 3 1803 370 300 84 28 chr1 159722873 159723264 -37472168 - L1M5 LINE L1 -2995 3151 2739 3 1803 219 69 0 0 chr1 159723703 159723732 -37471700 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1803 574 259 22 29 chr1 159723973 159724112 -37471320 + RLTR23 LTR ERV1 2 139 -291 3 1803 253 250 112 0 chr1 159724479 159724559 -37470873 + MLT2B3 LTR ERVL 1 89 -465 3 1803 238 248 168 107 chr1 159724559 159724610 -37470822 + MTEa LTR MaLR 1 139 -240 3 1803 398 332 37 118 chr1 159724600 159724870 -37470562 + ORR1E LTR MaLR 66 313 -46 3 1803 243 167 171 49 chr1 159726096 159726178 -37469254 - MER53 DNA hAT -5 188 97 3 1803 269 329 0 0 chr1 159727195 159727265 -37468167 - B4 SINE B4 -2 290 221 3 1803 242 375 56 0 chr1 159731093 159731165 -37464267 + ID4_ SINE ID 2 77 -6 3 1803 793 328 0 5 chr1 159731101 159731306 -37464126 + ID_B1 SINE B4 15 218 -6 3 1803 233 348 44 79 chr1 159732743 159732971 -37462461 - MIRb SINE MIR -33 235 16 3 1803 407 296 163 20 chr1 159733593 159733838 -37461594 - B4A SINE B4 -12 280 1 3 1803 31 44 0 0 chr1 159733838 159733883 -37461549 + AT_rich Low_complexity Low_complexity 1 45 0 3 1803 202 132 26 0 chr1 159734653 159734691 -37460741 + A-rich Low_complexity Low_complexity 2 40 0 3 1803 1588 150 84 14 chr1 159735821 159736105 -37459327 + MTC LTR MaLR 1 304 -117 3 1803 236 288 114 26 chr1 159736337 159736451 -37458981 + MIRb SINE MIR 119 242 -26 3 1803 241 287 13 89 chr1 159737155 159737312 -37458120 + L2a LINE L2 1709 1853 -1566 3 1803 420 282 99 80 chr1 159737794 159738006 -37457426 - MT2A LTR ERVL -7 526 311 3 1803 542 245 277 0 chr1 159737999 159738154 -37457278 + URR1B DNA MER1_type 26 223 -2 3 1803 457 306 83 105 chr1 159738154 159738470 -37456962 - MT2A LTR ERVL -218 315 8 3 1803 851 108 46 8 chr1 159738471 159738601 -37456831 + B1_Mus1 SINE Alu 13 147 -1 3 1803 705 310 54 27 chr1 159738626 159738961 -37456471 + L2a LINE L2 2249 2592 -827 3 1803 1844 278 72 29 chr1 159738992 159739617 -37455815 + MER82 DNA MER2_type 1 652 -1 3 1803 235 338 26 13 chr1 159739636 159739714 -37455718 - L2b LINE L2 -44 3331 3253 3 1803 330 235 11 76 chr1 159739787 159739879 -37455553 + MLT2B3 LTR ERVL 3 88 -466 3 1803 702 254 67 35 chr1 159739915 159740197 -37455235 + Ricksha_c DNA MuDR 615 905 -1143 3 1803 216 311 78 43 chr1 159740347 159740488 -37454944 + L2a LINE L2 2921 3066 -321 3 1803 374 297 32 82 chr1 159740529 159740749 -37454683 + L2a LINE L2 3214 3422 -4 3 1803 190 312 16 0 chr1 159741451 159741515 -37453917 - L2a LINE L2 -4 3422 3358 3 1803 324 200 28 14 chr1 159741663 159741734 -37453698 + ORR1E LTR MaLR 276 347 -12 3 1803 298 239 14 0 chr1 159741749 159741820 -37453612 + MLT2C1 LTR ERVL 32 103 -294 3 1803 4353 134 96 69 chr1 159741877 159742723 -37452709 + RMER19B LTR ERVK 1 869 -33 3 1803 1169 47 271 5 chr1 159742723 159742992 -37452440 + L1_Mus1 LINE L1 6248 6584 0 3 1803 277 321 24 111 chr1 159743201 159743327 -37452105 - PB1D10 SINE Alu 0 117 3 3 1803 276 396 22 0 chr1 159743261 159743352 -37452080 - ID_B1 SINE B4 -75 149 57 3 1803 1618 42 0 0 chr1 159743478 159743671 -37451761 + B2_Mm1t SINE B2 1 193 0 3 1803 324 319 110 18 chr1 159744114 159744277 -37451155 + ORR1E LTR MaLR 20 197 -162 3 1803 320 374 69 20 chr1 159744440 159744642 -37450790 - L1MEf LINE L1 -4466 1734 1523 3 1803 1074 311 32 47 chr1 159744677 159745142 -37450290 - Lx8 LINE L1 -3 7470 7013 3 1803 225 0 0 0 chr1 159745547 159745572 -37449860 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1803 2398 304 64 44 chr1 159745572 159746855 -37448577 - Lx8 LINE L1 -470 7003 5695 3 1803 2101 275 111 78 chr1 159746846 159746931 -37448501 - Lx8 LINE L1 -1338 4805 4672 3 1803 620 0 0 26 chr1 159746931 159747008 -37448424 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 1803 2101 277 112 86 chr1 159747008 159748763 -37446669 - Lx8 LINE L1 -1441 4702 2863 3 1803 787 216 60 95 chr1 159748763 159748963 -37446469 - B3 SINE B2 -3 195 1 3 1803 2101 277 112 86 chr1 159748963 159749267 -37446165 - Lx8 LINE L1 -1441 2862 2543 3 1803 768 63 0 0 chr1 159749267 159749378 -37446054 + (GA)n Simple_repeat Simple_repeat 1 111 0 3 1803 1896 284 116 114 chr1 159749378 159749672 -37445760 - Lx8 LINE L1 -3338 2542 2215 3 1803 414 0 0 0 chr1 159749672 159749718 -37445714 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1803 1896 288 113 93 chr1 159749718 159750905 -37444527 - Lx8 LINE L1 -3666 2214 928 3 1803 367 299 8 0 chr1 159751658 159751775 -37443657 - PB1D7 SINE Alu -2 118 1 3 1803 32 26 0 0 chr1 159751776 159751815 -37443617 + AT_rich Low_complexity Low_complexity 1 39 0 3 1803 433 316 119 90 chr1 159752140 159752718 -37442714 - L1MEf LINE L1 -5176 1024 430 3 1803 516 294 14 76 chr1 159752733 159752791 -37442641 + B3A SINE B2 2 58 -140 3 1803 297 0 0 0 chr1 159752791 159752824 -37442608 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1803 516 294 14 76 chr1 159752824 159752975 -37442457 + B3A SINE B2 59 198 0 3 1803 286 319 112 45 chr1 159753712 159753935 -37441497 + MIRb SINE MIR 17 254 -14 3 1803 2419 252 164 9 chr1 159754427 159755205 -37440227 + RCHARR1 DNA MER1_type 68 966 -8 3 1803 3166 214 59 87 chr1 159755217 159756114 -37439318 + RMER13B LTR ERVK 2 873 -35 3 1803 1043 84 6 43 chr1 159756996 159757157 -37438275 - URR1A DNA MER1_type 0 226 72 4 1803 263 347 76 35 chr1 159757477 159757781 -37437651 + L2a LINE L2 3057 3424 -2 4 1803 537 16 0 0 chr1 159758634 159758696 -37436736 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1803 306 0 0 0 chr1 159758789 159758823 -37436609 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1803 312 111 0 0 chr1 159758825 159758879 -37436553 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1803 293 234 49 29 chr1 159759272 159759358 -37436074 + ORR1E LTR MaLR 248 325 -54 4 1803 288 0 0 0 chr1 159759521 159759553 -37435879 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1803 2004 273 111 58 chr1 159759555 159760610 -37434822 - Lx9 LINE L1 -172 7472 6362 4 1803 292 271 42 48 chr1 159760648 159760815 -37434617 + L1_Rod LINE L1 4557 4722 -1125 4 1803 267 215 31 0 chr1 159760815 159760880 -37434552 + ORR1E LTR MaLR 313 379 0 4 1803 3711 285 75 112 chr1 159760880 159762803 -37432629 + ORR1E-int LTR MaLR 1 1580 0 4 1803 391 308 61 0 chr1 159763477 159763675 -37431757 + L1MA6 LINE L1 2287 2496 -4353 4 1803 279 0 0 0 chr1 159763709 159763740 -37431692 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1803 1560 274 92 53 chr1 159763750 159764121 -37431311 + L1MA6 LINE L1 2637 3003 -3842 4 1803 5614 80 5 0 chr1 159764121 159764867 -37430565 + L1_Mus3 LINE L1 5887 6636 -2 4 1803 1560 248 140 38 chr1 159764867 159765621 -37429811 + L1MA6 LINE L1 3004 3859 -2986 4 1803 779 271 29 0 chr1 159765717 159765927 -37429505 + Lx8 LINE L1 6263 6478 -995 4 1803 1013 291 39 36 chr1 159765999 159766413 -37429019 + Lx8 LINE L1 6710 7124 -349 4 1803 296 181 0 27 chr1 159766418 159766492 -37428940 + GA-rich Low_complexity Low_complexity 1 72 0 4 1803 577 204 92 113 chr1 159766622 159766724 -37428708 + L1MA6 LINE L1 5250 5339 -1506 4 1803 952 228 30 0 chr1 159766724 159766926 -37428506 + B3 SINE B2 3 210 -6 4 1803 577 204 92 113 chr1 159766926 159767061 -37428371 + L1MA6 LINE L1 5340 5482 -1363 4 1803 419 140 156 18 chr1 159767108 159767217 -37428215 + L1_Mur3 LINE L1 3468 3591 -2289 4 1803 1326 282 60 85 chr1 159767221 159767834 -37427598 - MT2B LTR ERVL -3 598 1 4 1803 8925 155 12 6 chr1 159767834 159769513 -37425919 + Lx6 LINE L1 3587 5275 -605 4 1803 3731 134 91 38 chr1 159769662 159770697 -37424735 + L1_Mur2 LINE L1 819 1908 -3969 4 1803 1287 100 0 0 chr1 159770693 159770883 -37424549 + Lx4A LINE L1 5646 5835 -1223 4 1803 3156 182 67 6 chr1 159770880 159771555 -37423877 + Lx5 LINE L1 5878 6593 -457 4 1803 7972 193 40 12 chr1 159771849 159773965 -37421467 + Lx6 LINE L1 5257 7441 -19 4 1803 603 311 0 22 chr1 159774032 159774170 -37421262 + RSINE1 SINE B4 3 137 -28 4 1803 684 83 0 0 chr1 159774180 159774289 -37421143 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 4 1803 453 81 0 0 chr1 159774298 159774360 -37421072 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 4 1803 892 252 111 8 chr1 159774363 159774844 -37420588 + L1MA6 LINE L1 5757 6298 -716 4 225 25603 103 12 9 chr1 159774855 159781036 -37414396 + L1_Mus1 LINE L1 387 6567 0 4 1804 1608 253 72 29 chr1 159781027 159781606 -37413826 + L1MA6 LINE L1 6299 6902 -100 4 1804 700 304 0 0 chr1 159782970 159783118 -37412314 - RSINE1 SINE B4 -15 150 3 4 1804 192 245 226 0 chr1 159785698 159785804 -37409628 - L2c LINE L2 -2 3385 3256 4 1804 325 374 7 0 chr1 159786280 159786435 -37408997 + L1M5 LINE L1 5190 5345 -801 4 1804 779 275 12 112 chr1 159787966 159788286 -37407146 - B4 SINE B4 -2 290 3 4 1804 182 238 0 73 chr1 159789020 159789088 -37406344 + L2 LINE L2 340 402 -3017 4 1804 186 43 0 0 chr1 159789201 159789224 -37406208 + (GAA)n Simple_repeat Simple_repeat 2 24 0 4 1804 374 0 22 0 chr1 159789896 159789942 -37405490 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 4 1804 211 209 0 0 chr1 159790139 159790182 -37405250 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1804 222 37 0 0 chr1 159790188 159790215 -37405217 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1804 216 284 120 88 chr1 159790790 159791049 -37404383 + L2a LINE L2 3132 3384 -42 4 1804 259 328 66 49 chr1 159791334 159791456 -37403976 + AmnSINE1 SINE SINE 390 513 -62 4 1804 260 208 69 30 chr1 159792194 159792268 -37403164 + MTE2a LTR MaLR 245 341 -38 4 1804 363 187 28 94 chr1 159792779 159792929 -37402503 + RMER15 LTR ERVL 1 119 -456 4 1804 241 351 10 21 chr1 159792928 159793024 -37402408 + B4 SINE B4 135 229 -63 4 1804 306 50 0 0 chr1 159793089 159793129 -37402303 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1804 315 257 6 0 chr1 159793441 159793545 -37401887 + L1M5 LINE L1 5337 5445 -855 4 1804 233 205 102 114 chr1 159793547 159793700 -37401732 + ORR1E LTR MaLR 168 319 -40 4 1804 602 196 66 29 chr1 159793835 159793972 -37401460 + B1_Mur4 SINE Alu 9 150 0 4 1804 322 361 101 14 chr1 159794071 159794349 -37401083 - L1M5 LINE L1 -1094 5052 4751 4 1804 319 229 120 15 chr1 159794417 159794550 -37400882 - L1ME2z LINE L1 -187 6257 6111 4 1804 800 247 85 5 chr1 159794722 159794921 -37400511 - B3 SINE B2 0 216 2 4 1804 1124 90 7 14 chr1 159795435 159795581 -37399851 - B1_Mus2 SINE Alu -2 145 1 4 1804 387 0 0 0 chr1 159795612 159795655 -37399777 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1804 188 86 29 0 chr1 159795655 159795689 -37399743 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1804 2107 150 50 58 chr1 159796345 159796726 -37398706 - ORR1C1 LTR MaLR 0 378 1 4 1804 532 312 107 31 chr1 159796894 159797011 -37398421 - L1MA4 LINE L1 -388 5912 5780 4 1804 357 24 0 0 chr1 159797011 159797053 -37398379 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1804 432 0 0 0 chr1 159797053 159797100 -37398332 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1804 532 312 107 31 chr1 159797100 159797457 -37397975 - L1MA4 LINE L1 -521 5779 5402 4 1804 287 385 34 21 chr1 159797680 159797919 -37397513 - Lx8 LINE L1 -132 7341 7100 4 1804 792 261 36 22 chr1 159797933 159798156 -37397276 + RMER15-int LTR ERVL 4368 4593 -406 4 1804 1269 225 70 22 chr1 159798171 159798526 -37396906 - Lx7 LINE L1 -1510 6186 5815 4 1804 456 231 17 0 chr1 159798517 159798635 -37396797 - Lx7 LINE L1 -609 5565 5426 4 1804 3444 217 59 16 chr1 159798620 159799482 -37395950 + Lx6 LINE L1 5502 6389 -1071 4 1804 2410 184 12 8 chr1 159799482 159799882 -37395550 + Lx6 LINE L1 7057 7458 -2 4 1804 215 245 0 0 chr1 159801060 159801113 -37394319 + T-rich Low_complexity Low_complexity 1 53 0 4 1804 181 232 125 0 chr1 159801312 159801368 -37394064 - L3 LINE CR1 -1272 3217 3155 4 1804 200 318 25 83 chr1 159802647 159802767 -37392665 + MIRc SINE MIR 128 243 -25 4 1804 492 284 28 56 chr1 159803012 159803191 -37392241 + AmnSINE1 SINE SINE 312 485 -90 4 1804 468 277 141 38 chr1 159803653 159803837 -37391595 + MIR SINE MIR 60 262 0 4 1804 2244 160 38 33 chr1 159804202 159804628 -37390804 + RMER6B LTR ERVK 1 428 -33 4 1804 42147 6 0 1 chr1 159807371 159814161 -37381271 - L1Md_A LINE L1 0 6582 1 4 1804 2145 174 42 0 chr1 159815239 159815596 -37379836 - ORR1D1 LTR MaLR -2 372 1 4 1804 256 239 93 43 chr1 159816345 159816507 -37378925 + L1MCc LINE L1 1367 1536 -4887 4 1804 234 301 114 9 chr1 159816576 159816690 -37378742 - MLT1H2 LTR MaLR 0 489 364 4 1804 189 0 0 0 chr1 159816693 159816714 -37378718 + (ATG)n Simple_repeat Simple_repeat 2 22 0 4 1804 276 321 108 20 chr1 159816719 159816970 -37378462 + L1MB5 LINE L1 5717 5989 -185 4 1804 21 36 0 0 chr1 159817057 159817085 -37378347 + AT_rich Low_complexity Low_complexity 1 28 0 4 1804 334 298 172 6 chr1 159817952 159818170 -37377262 - B4A SINE B4 -20 272 2 4 1804 210 289 0 0 chr1 159818258 159818303 -37377129 + B4A SINE B4 6 50 -242 4 1804 232 214 18 18 chr1 159819777 159819834 -37375598 + MLT2F LTR ERVL 25 81 -582 4 1804 405 318 251 6 chr1 159819870 159820212 -37375220 + MLT2F LTR ERVL 176 601 -62 4 1804 225 143 0 23 chr1 159820293 159820336 -37375096 + MLT2F LTR ERVL 519 560 -3 4 1804 336 170 10 41 chr1 159820477 159820575 -37374857 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 4 1804 189 0 0 0 chr1 159822145 159822166 -37373266 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1804 204 258 0 29 chr1 159822217 159822285 -37373147 + T-rich Low_complexity Low_complexity 5 70 0 4 1804 654 310 88 23 chr1 159823277 159823538 -37371894 + Arthur1 DNA Tip100 284 561 -3386 4 1804 1598 26 16 5 chr1 159823538 159823728 -37371704 + L1Md_F3 LINE L1 6390 6581 -3 4 1804 821 290 99 34 chr1 159823729 159823814 -37371618 + Arthur1 DNA Tip100 3420 3508 -439 4 1804 1414 258 18 51 chr1 159823814 159824206 -37371226 - MTEa LTR MaLR 0 379 1 4 1804 821 290 99 34 chr1 159824206 159824594 -37370838 + Arthur1 DNA Tip100 3509 3924 -23 4 1804 292 305 76 20 chr1 159824882 159825064 -37370368 + MIRc SINE MIR 67 268 0 4 1804 1029 147 0 7 chr1 159825724 159825875 -37369557 - B1_Mur4 SINE Alu 0 150 1 4 1804 366 291 160 0 chr1 159827920 159828095 -37367337 + L2a LINE L2 3222 3424 -2 4 1804 334 284 111 8 chr1 159828094 159828211 -37367221 - MIR SINE MIR -121 141 13 4 1804 210 71 0 0 chr1 159828463 159828491 -37366941 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1804 429 20 0 0 chr1 159829131 159829181 -37366251 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 4 1804 189 0 81 27 chr1 159829483 159829520 -37365912 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 4 1804 489 253 0 0 chr1 159831102 159831248 -37364184 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 1804 25 0 0 0 chr1 159832630 159832655 -37362777 + AT_rich Low_complexity Low_complexity 1 25 0 4 1804 305 164 34 25 chr1 159832720 159832839 -37362593 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 1804 198 330 109 36 chr1 159833008 159833118 -37362314 - MIRb SINE MIR -131 137 20 4 1804 292 268 139 35 chr1 159833338 159833539 -37361893 - L1MD1 LINE L1 -365 5877 5656 4 1804 183 42 0 0 chr1 159833542 159833566 -37361866 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1804 921 44 0 0 chr1 159833566 159833679 -37361753 + (GGGAGA)n Simple_repeat Simple_repeat 5 118 0 4 1804 793 286 0 12 chr1 159833679 159833842 -37361590 - B3A SINE B2 -36 162 2 4 1804 941 254 86 53 chr1 159833847 159834689 -37360743 - L1MD1 LINE L1 -554 5688 4815 4 1804 1393 235 148 27 chr1 159834712 159834757 -37360675 + MTD LTR MaLR 3 44 -375 4 1804 1944 156 104 36 chr1 159834757 159835150 -37360282 - MTC LTR MaLR 0 421 2 4 1804 1393 235 148 27 chr1 159835150 159835476 -37359956 + MTD LTR MaLR 45 419 0 4 1804 800 275 129 32 chr1 159835481 159836045 -37359387 - L1MD1 LINE L1 -1341 4805 4187 4 1804 1759 270 97 33 chr1 159836770 159838310 -37357122 - L1MB4 LINE L1 -143 6428 4786 4 1804 375 323 21 26 chr1 159838504 159838698 -37356734 - L1M2 LINE L1 -1826 4317 4125 4 1804 318 317 42 38 chr1 159838722 159838984 -37356448 - L1MB4 LINE L1 -5446 1187 925 4 1804 338 390 71 31 chr1 159839087 159839341 -37356091 - L1MB4 LINE L1 -5786 847 584 4 1804 250 283 40 32 chr1 159839389 159839513 -37355919 - L1MB4 LINE L1 -6195 438 314 4 1804 387 0 0 0 chr1 159839520 159839563 -37355869 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1804 276 30 0 0 chr1 159839563 159839595 -37355837 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1804 212 304 0 0 chr1 159839608 159839654 -37355778 - ID4_ SINE ID -6 77 32 5 1804 400 268 35 7 chr1 159839704 159839847 -37355585 - L1MB4 LINE L1 -6427 206 60 4 1804 489 254 37 0 chr1 159839957 159840100 -37355332 + MER112 DNA MER1_type 1 148 -113 5 1804 316 59 19 19 chr1 159840907 159840959 -37354473 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 5 1804 1201 35 14 0 chr1 159841012 159841155 -37354277 - B1_Mus1 SINE Alu -2 146 2 5 1804 291 287 146 45 chr1 159841156 159841328 -37354104 - MIRb SINE MIR -47 221 37 5 1804 566 357 149 7 chr1 159843349 159843631 -37351801 + MLT2B2 LTR ERVL 150 471 -44 5 1804 209 318 229 36 chr1 159844048 159844384 -37351048 + L2 LINE L2 1658 2058 -1361 5 1804 183 80 0 0 chr1 159844422 159844447 -37350985 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1804 649 269 82 5 chr1 159844671 159844865 -37350567 - B3 SINE B2 -6 210 2 5 1804 194 303 140 53 chr1 159845233 159845383 -37350049 - MIR SINE MIR -77 185 23 5 1804 190 322 30 61 chr1 159846314 159846413 -37349019 - MIR3 SINE MIR -3 205 110 5 1804 225 281 142 50 chr1 159846642 159846762 -37348670 - MIRb SINE MIR -108 160 30 5 1804 2266 211 61 47 chr1 159847035 159847655 -37347777 - Lx2B LINE L1 -4 6996 6368 5 1804 234 200 95 48 chr1 159847720 159847825 -37347607 - Lx9 LINE L1 -2 7642 7533 5 1804 228 35 0 0 chr1 159847832 159847861 -37347571 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1804 2452 270 101 83 chr1 159848059 159849128 -37346304 - Lx8 LINE L1 -5 7468 6381 5 1804 618 192 98 23 chr1 159849191 159849324 -37346108 - B1F SINE Alu -6 143 1 5 1804 368 72 0 18 chr1 159849724 159849781 -37345651 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1804 288 0 0 0 chr1 159849781 159849813 -37345619 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1804 400 249 63 11 chr1 159850094 159850269 -37345163 - L1MDa LINE L1 -3423 3114 2931 5 1804 313 221 74 30 chr1 159850444 159850579 -37344853 - L1MDa LINE L1 -3999 2634 2494 5 1804 441 156 0 0 chr1 159850620 159850716 -37344716 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1804 898 263 140 28 chr1 159851529 159851850 -37343582 + ORR1D2 LTR MaLR 1 357 -13 5 1804 460 306 78 14 chr1 159851866 159852085 -37343347 - L1MC LINE L1 -2140 4006 3774 5 1804 259 213 27 0 chr1 159852132 159852207 -37343225 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 5 1804 1035 241 69 3 chr1 159852629 159852933 -37342499 - Lx8 LINE L1 -541 6932 6609 5 1804 480 111 0 0 chr1 159853196 159853268 -37342164 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1804 4294 70 43 0 chr1 159853328 159853913 -37341519 + L1_Mus3 LINE L1 6027 6636 -2 5 1804 243 310 71 40 chr1 159854435 159854761 -37340671 - HAL1 LINE L1 -766 1741 1406 5 1804 276 137 0 0 chr1 159854863 159854914 -37340518 + (TCC)n Simple_repeat Simple_repeat 3 53 0 5 1804 775 297 1 0 chr1 159855525 159855744 -37339688 - Lx8 LINE L1 -480 7164 6814 5 1804 2034 286 68 35 chr1 159855759 159856881 -37338551 - Lx8 LINE L1 -986 6487 5323 5 1804 207 0 0 0 chr1 159856881 159856904 -37338528 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 5 1804 1442 275 50 53 chr1 159856904 159857109 -37338323 - Lx8 LINE L1 -558 5322 5124 5 1804 7746 52 2 2 chr1 159857113 159858306 -37337126 - L1Md_F2 LINE L1 -1 6581 5390 5 1804 785 259 76 11 chr1 159858313 159858575 -37336857 - Lx8 LINE L1 -756 5124 4846 5 1804 1260 239 92 32 chr1 159858574 159859097 -37336335 + Lx8 LINE L1 4222 4775 -1105 5 1804 195 42 0 0 chr1 159859372 159859396 -37336036 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1804 317 245 28 14 chr1 159859396 159859537 -37335895 + (TA)n Simple_repeat Simple_repeat 2 144 0 5 1804 1523 134 15 22 chr1 159859538 159859805 -37335627 + RLTR15 LTR ERVK 95 359 0 5 1804 7950 147 72 7 chr1 159860010 159861819 -37333613 - Lx4A LINE L1 -7 7051 5112 5 1804 8523 9 0 0 chr1 159863675 159864946 -37330486 - L1Md_A LINE L1 0 6582 5313 5 1804 339 25 0 0 chr1 159864987 159865027 -37330405 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1804 423 0 0 0 chr1 159865027 159865073 -37330359 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1804 717 307 28 35 chr1 159865115 159865399 -37330033 - B4A SINE B4 -10 282 1 5 1804 7567 82 6 11 chr1 159865998 159867348 -37328084 - L1_Mus4 LINE L1 -3 6633 5292 5 1804 305 319 79 17 chr1 159869510 159869682 -37325750 + MIR3 SINE MIR 14 198 -10 5 1804 632 288 136 83 chr1 159869982 159870402 -37325030 - L2a LINE L2 -21 3405 2964 5 1804 729 23 0 0 chr1 159871788 159871875 -37323557 + (TTC)n Simple_repeat Simple_repeat 2 88 0 5 1804 564 290 42 32 chr1 159872306 159872495 -37322937 - ORR1E LTR MaLR -168 191 1 5 1804 510 267 52 32 chr1 159873481 159873636 -37321796 - MIR SINE MIR -65 197 40 5 1804 204 339 46 0 chr1 159874268 159874333 -37321099 + L2b LINE L2 3276 3343 -32 5 1804 1962 206 41 22 chr1 159875909 159876320 -37319112 - MTD LTR MaLR 0 419 1 5 1804 330 26 0 0 chr1 159876639 159876678 -37318754 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1804 666 304 107 37 chr1 159876731 159877001 -37318431 - B4A SINE B4 -2 290 2 5 1804 346 325 55 43 chr1 159878042 159878206 -37317226 + MIR3 SINE MIR 4 169 -39 5 1804 305 345 137 24 chr1 159878316 159878521 -37316911 + MIRb SINE MIR 26 253 -15 5 1804 281 359 184 0 chr1 159879989 159880206 -37315226 - MIRb SINE MIR -2 266 10 5 1804 484 345 62 0 chr1 159880203 159880381 -37315051 - MIRb SINE MIR -51 217 30 5 1804 781 219 228 3 chr1 159880956 159881255 -37314177 + MTD LTR MaLR 51 416 -3 5 1804 543 31 0 0 chr1 159881261 159881326 -37314106 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 1804 675 347 14 20 chr1 159881571 159881865 -37313567 + B4A SINE B4 1 292 0 5 1804 280 0 24 24 chr1 159881885 159881926 -37313506 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1804 183 343 48 19 chr1 159882311 159882415 -37313017 - L2 LINE L2 -493 2926 2820 5 1804 427 312 58 49 chr1 159882537 159882780 -37312652 - L2 LINE L2 -888 2531 2287 5 1804 331 385 20 20 chr1 159884392 159884543 -37310889 + LTR33A_ LTR ERVL 51 201 -330 5 1804 599 250 132 35 chr1 159885471 159885699 -37309733 - Lx2B LINE L1 -10 6990 6741 5 1804 975 180 0 0 chr1 159885697 159885880 -37309552 + Lx2B LINE L1 5789 5971 -1029 5 1804 1446 222 159 49 chr1 159885881 159886308 -37309124 - RMER19C LTR ERVK -3 608 135 5 1804 441 0 0 0 chr1 159887440 159887489 -37307943 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 5 1804 1142 88 0 0 chr1 159887530 159887677 -37307755 - B1_Mus1 SINE Alu 0 148 2 5 1804 183 304 28 42 chr1 159888792 159888864 -37306568 - MIRb SINE MIR -9 259 189 5 1804 340 335 60 28 chr1 159888890 159889108 -37306324 - L2a LINE L2 -1 3425 3201 5 1804 227 341 23 46 chr1 159889224 159889399 -37306033 - L2a LINE L2 -436 2983 2813 5 1804 2860 262 106 60 chr1 159889579 159890738 -37304694 - Lx9 LINE L1 -7 7637 6417 5 1804 332 0 47 0 chr1 159890738 159890781 -37304651 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 1804 1117 66 0 0 chr1 159890781 159890917 -37304515 - B1_Mus1 SINE Alu -10 138 3 5 1804 2860 262 106 60 chr1 159890917 159890979 -37304453 - Lx9 LINE L1 -1228 6416 6359 5 1804 423 0 0 0 chr1 159890980 159891027 -37304405 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1804 276 324 98 27 chr1 159891135 159891319 -37304113 - L2a LINE L2 -808 2611 2415 5 1804 206 408 34 12 chr1 159891445 159891575 -37303857 - MIRc SINE MIR -132 136 9 5 1804 247 364 186 12 chr1 159893298 159893643 -37301789 - L2 LINE L2 -444 2975 2571 5 1804 357 321 19 19 chr1 159895549 159895745 -37299687 + GA-rich Low_complexity Low_complexity 1 196 0 5 1804 327 338 26 32 chr1 159895746 159895902 -37299530 + HAL1-3A_ME LINE L1 2283 2437 -421 5 1804 24 0 0 0 chr1 159896034 159896058 -37299374 + AT_rich Low_complexity Low_complexity 1 24 0 5 1804 198 379 46 0 chr1 159898393 159898480 -37296952 - L2a LINE L2 -1 3425 3335 5 1804 212 342 9 27 chr1 159898749 159898860 -37296572 - L2c LINE L2 -8 3379 3271 5 1804 441 0 0 0 chr1 159899309 159899358 -37296074 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1804 846 202 0 0 chr1 159899420 159899598 -37295834 + GA-rich Low_complexity Low_complexity 3 180 0 5 1804 1131 313 83 10 chr1 159901382 159901873 -37293559 + Lx8 LINE L1 6804 7330 -143 5 1804 252 341 23 45 chr1 159902609 159902741 -37292691 + MIRc SINE MIR 25 153 -115 5 1804 414 333 16 0 chr1 159902925 159903051 -37292381 - MER104 DNA Tc2 0 181 54 5 1804 188 326 0 0 chr1 159903148 159903191 -37292241 - MIRm SINE MIR -28 248 206 5 1804 784 237 29 43 chr1 159903480 159903687 -37291745 - ID_B1 SINE B4 -17 207 4 5 1804 379 331 57 13 chr1 159903739 159903898 -37291534 + LTR16D LTR ERVL 470 635 -16 5 1804 271 299 45 22 chr1 159904056 159904145 -37291287 + MIRc SINE MIR 154 244 -24 5 1804 248 338 58 39 chr1 159905337 159905491 -37289941 - MLT1A-int LTR MaLR -474 1015 859 5 1804 636 290 36 10 chr1 159905485 159905680 -37289752 - MLT1A-int LTR MaLR -639 732 533 5 1804 522 0 0 0 chr1 159905837 159905895 -37289537 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1804 286 301 9 48 chr1 159905904 159906048 -37289384 - Lx9 LINE L1 -171 7473 7206 5 1804 694 335 74 58 chr1 159906089 159906573 -37288859 + Lx9 LINE L1 6636 7127 -517 5 1804 680 282 108 33 chr1 159906636 159907005 -37288427 - MLT1A-int LTR MaLR -828 543 2 5 1804 386 308 68 23 chr1 159907006 159907182 -37288250 - MLT1A LTR MaLR 0 374 191 5 1804 1062 101 6 16 chr1 159907232 159907274 -37288158 + (TTC)n Simple_repeat Simple_repeat 1 42 0 5 1804 1434 45 0 0 chr1 159907274 159907452 -37287980 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1804 1062 101 6 16 chr1 159907452 159907463 -37287969 + (TTC)n Simple_repeat Simple_repeat 2 12 0 5 1804 1508 36 0 8 chr1 159907463 159907829 -37287603 + (TTCTCC)n Simple_repeat Simple_repeat 1 362 0 5 225 1062 101 6 16 chr1 159907829 159907876 -37287556 + (TTC)n Simple_repeat Simple_repeat 2 49 0 5 1805 1454 22 0 16 chr1 159907876 159908059 -37287373 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1805 1062 101 6 16 chr1 159908059 159908134 -37287298 + (TTC)n Simple_repeat Simple_repeat 2 76 0 5 1805 226 259 0 18 chr1 159908134 159908189 -37287243 + CT-rich Low_complexity Low_complexity 2 55 0 5 1805 18271 94 10 6 chr1 159908191 159911671 -37283761 - L1_Mus2 LINE L1 -3 6563 3071 5 1805 265 326 171 14 chr1 159911674 159911814 -37283618 - MLT1A LTR MaLR -212 162 1 5 1805 317 24 24 0 chr1 159911966 159912008 -37283424 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1805 279 0 0 0 chr1 159912008 159912038 -37283394 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1805 2074 67 7 24 chr1 159912926 159913216 -37282216 + L1_Mus2 LINE L1 6280 6564 -2 6 1805 414 336 32 0 chr1 159914990 159915115 -37280317 + RSINE1 SINE B4 13 141 -24 6 1805 23 54 0 0 chr1 159915190 159915227 -37280205 + AT_rich Low_complexity Low_complexity 1 37 0 6 1805 325 260 137 8 chr1 159915263 159915387 -37280045 - L1ME2 LINE L1 -3 6334 6195 6 1805 1863 166 22 89 chr1 159915415 159915786 -37279646 - ORR1B1 LTR MaLR -8 386 41 6 1805 210 71 0 0 chr1 159915835 159915863 -37279569 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1805 277 24 23 23 chr1 159915960 159916003 -37279429 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 6 1805 801 40 0 0 chr1 159916142 159916243 -37279189 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1805 358 293 60 79 chr1 159916276 159916718 -37278714 - L1ME2 LINE L1 -544 5793 5359 6 1805 252 186 0 0 chr1 159916839 159916898 -37278534 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1805 383 323 82 131 chr1 159916918 159917224 -37278208 - ORR1E LTR MaLR -55 304 14 6 1805 412 288 100 0 chr1 159917228 159917398 -37278034 - MTE-int LTR MaLR -44 1536 1350 6 1805 338 280 119 93 chr1 159917423 159917616 -37277816 + B3A SINE B2 1 198 0 6 1805 475 333 19 51 chr1 159917636 159917776 -37277656 + B3A SINE B2 40 179 -19 6 1805 462 65 0 0 chr1 159917776 159917838 -37277594 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1805 475 333 19 51 chr1 159917838 159917855 -37277577 + B3A SINE B2 180 192 -6 6 1805 666 321 182 27 chr1 159917852 159918199 -37277233 - MTE-int LTR MaLR -218 1362 927 6 1805 319 288 91 29 chr1 159918241 159918549 -37276883 - L1M2 LINE L1 -3691 3154 2828 6 1805 27 29 0 0 chr1 159918596 159918630 -37276802 + AT_rich Low_complexity Low_complexity 1 34 0 6 1805 487 308 122 34 chr1 159918730 159919589 -37275843 - L1M2 LINE L1 -4225 2624 1690 6 1805 253 244 65 73 chr1 159919766 159919890 -37275542 + L1M3 LINE L1 3845 3967 -2173 6 1805 585 246 155 43 chr1 159919974 159920161 -37275271 - ORR1C1 LTR MaLR -4 374 167 6 1805 441 81 0 0 chr1 159920162 159920224 -37275208 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1805 941 240 35 4 chr1 159920224 159920472 -37274960 - ORR1D1 LTR MaLR -112 258 5 6 1805 230 277 10 41 chr1 159920536 159920634 -37274798 + MLT1A1 LTR MaLR 314 408 0 6 1805 269 317 92 15 chr1 159920671 159921125 -37274307 + L1ME1 LINE L1 5572 6055 -124 6 1805 339 319 43 0 chr1 159921183 159921321 -37274111 - L1ME2 LINE L1 -1481 4838 4695 6 1805 627 265 110 43 chr1 159921327 159921536 -37273896 + MER2 DNA MER2_type 1 223 -122 6 1805 437 256 55 104 chr1 159921649 159921832 -37273600 - RMER30 DNA MER1_type -28 174 1 6 1805 196 30 29 29 chr1 159922076 159922110 -37273322 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 6 1805 328 311 66 30 chr1 159922601 159922767 -37272665 - L1ME2 LINE L1 -4673 1742 1571 6 1805 264 210 111 0 chr1 159922789 159922870 -37272562 - L1ME2 LINE L1 -4974 1426 1337 6 1805 881 281 53 42 chr1 159922895 159923464 -37271968 - L1ME2 LINE L1 -5213 1187 613 6 1805 340 387 63 15 chr1 159923519 159923789 -37271643 - L1ME2 LINE L1 -5898 502 220 6 1805 231 250 73 42 chr1 159923834 159923930 -37271502 - L1ME2 LINE L1 -6260 140 42 6 1805 1730 265 62 9 chr1 159924073 159924732 -37270700 - L1MC4 LINE L1 -140 7902 7209 6 1805 321 314 83 50 chr1 159925165 159925346 -37270086 - L1MC4 LINE L1 -824 7058 6872 6 1805 24 0 0 0 chr1 159925443 159925467 -37269965 + AT_rich Low_complexity Low_complexity 1 24 0 6 1805 482 239 121 25 chr1 159925536 159925964 -37269468 + L1M4c LINE L1 2331 2810 -3572 6 1805 951 286 63 34 chr1 159926094 159926600 -37268832 + L1MB7 LINE L1 5648 6168 -16 6 1805 341 281 156 16 chr1 159926609 159926876 -37268556 - L1MDa LINE L1 -4500 2133 1757 6 1805 3428 73 11 7 chr1 159926883 159927338 -37268094 - L1_Mus1 LINE L1 0 6567 6111 6 1805 639 107 45 0 chr1 159927383 159927486 -37267946 + B2_Mm2 SINE B2 59 164 -31 6 1805 242 329 0 0 chr1 159927818 159927900 -37267532 + ID4_ SINE ID 2 83 0 6 1805 344 284 39 19 chr1 159927946 159928050 -37267382 + PB1D10 SINE Alu 1 106 -11 6 1805 651 271 65 8 chr1 159929410 159929767 -37265665 - L1M5 LINE L1 -445 5717 5332 6 1805 281 287 48 6 chr1 159929825 159929993 -37265439 - L1M5 LINE L1 -888 5258 5084 6 1805 3781 68 4 2 chr1 159930322 159930809 -37264623 + L1_Mus1 LINE L1 6080 6567 0 6 1805 182 105 26 0 chr1 159930821 159930859 -37264573 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1805 24 77 0 0 chr1 159930861 159930913 -37264519 + AT_rich Low_complexity Low_complexity 1 52 0 6 1805 248 287 118 11 chr1 159931072 159931589 -37263843 - L1M5 LINE L1 -1618 4528 3952 6 1805 245 175 70 0 chr1 159931630 159931687 -37263745 + L1MA9 LINE L1 6017 6077 -235 6 1805 243 199 62 32 chr1 159931833 159931947 -37263485 + L1MA9 LINE L1 6189 6312 0 6 1805 311 96 19 0 chr1 159932146 159932198 -37263234 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1805 22 0 0 0 chr1 159932266 159932288 -37263144 + AT_rich Low_complexity Low_complexity 1 22 0 6 1805 285 316 9 73 chr1 159932733 159932781 -37262651 - L1M5 LINE L1 -2621 3525 3480 6 1805 281 304 59 0 chr1 159932781 159932883 -37262549 - PB1D10 SINE Alu -7 110 3 6 1805 285 316 9 73 chr1 159932883 159933066 -37262366 - L1M5 LINE L1 -2667 3479 3309 6 1805 777 230 93 10 chr1 159934675 159934807 -37260625 - ORR1C2 LTR MaLR -1 383 235 6 1805 207 0 0 0 chr1 159934807 159934830 -37260602 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 6 1805 777 230 93 10 chr1 159934830 159934890 -37260542 - ORR1C2 LTR MaLR -150 234 175 6 1805 238 321 0 0 chr1 159934904 159934957 -37260475 - ORR1C2 LTR MaLR -337 57 5 6 1805 863 295 99 19 chr1 159935300 159935732 -37259700 - L2a LINE L2 0 3426 2960 6 1805 726 43 0 0 chr1 159936250 159936344 -37259088 + (TTTTC)n Simple_repeat Simple_repeat 4 97 0 6 1805 1269 85 0 0 chr1 159936350 159936526 -37258906 + (TCTCC)n Simple_repeat Simple_repeat 3 178 0 6 1805 268 82 0 0 chr1 159936526 159936575 -37258857 - Lx LINE L1 -4 6650 6602 6 1805 464 0 18 0 chr1 159936824 159936880 -37258552 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1805 468 0 0 0 chr1 159937692 159937744 -37257688 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1805 1226 108 49 0 chr1 159937889 159938074 -37257358 - B2_Mm2 SINE B2 0 195 2 6 1805 389 411 58 37 chr1 159938752 159939078 -37256354 + MLT1J2 LTR MaLR 67 399 -49 6 1805 636 156 9 18 chr1 159941002 159941113 -37254319 - B1_Mus2 SINE Alu 0 147 38 6 1805 378 0 0 0 chr1 159941226 159941268 -37254164 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1805 1035 209 37 5 chr1 159941415 159941631 -37253801 - URR1B DNA MER1_type -2 223 1 6 1805 213 333 199 0 chr1 159941659 159941815 -37253617 - L2 LINE L2 -380 3039 2853 6 1805 927 262 16 85 chr1 159942040 159942286 -37253146 + B4A SINE B4 1 229 -63 6 1805 200 333 0 0 chr1 159942409 159942469 -37252963 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1805 2344 95 0 12 chr1 159942825 159943166 -37252266 - IAPLTR4 LTR ERVK -8 337 1 6 1805 326 337 42 42 chr1 159944206 159944392 -37251040 + MIR SINE MIR 74 268 0 6 1805 21 0 0 0 chr1 159944762 159944783 -37250649 + AT_rich Low_complexity Low_complexity 1 21 0 6 1805 272 287 156 0 chr1 159945761 159945883 -37249549 - MIR SINE MIR -43 219 79 6 1805 1927 110 6 99 chr1 159946216 159946568 -37248864 - ORR1A2 LTR MaLR -8 319 1 6 1805 398 268 49 28 chr1 159946811 159946854 -37248578 + MIRb SINE MIR 123 165 -103 6 1805 333 179 25 25 chr1 159946854 159946934 -37248498 - MADE2 DNA Mariner 0 80 1 6 1805 398 268 49 28 chr1 159946934 159947032 -37248400 + MIRb SINE MIR 166 267 -1 6 1805 1351 254 102 14 chr1 159947589 159947960 -37247472 - MTD LTR MaLR -15 404 1 6 1805 1818 259 37 64 chr1 159948592 159949153 -37246279 + Lx5 LINE L1 6486 7031 -19 6 1805 216 331 47 53 chr1 159949613 159949763 -37245669 - L2 LINE L2 -1053 2366 2218 6 1805 204 405 55 16 chr1 159949809 159949937 -37245495 - MIRm SINE MIR -142 134 2 6 1805 201 147 0 0 chr1 159949937 159949971 -37245461 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1805 969 175 153 36 chr1 159951030 159951279 -37244153 - Lx5 LINE L1 -8 7042 6765 6 1805 233 368 86 50 chr1 159951398 159951453 -37243979 + ID_B1 SINE B4 71 215 -9 6 1805 368 294 0 0 chr1 159951453 159951538 -37243894 + B1F SINE Alu 56 140 -9 6 1805 432 330 106 13 chr1 159951813 159952049 -37243383 - LTR79 LTR ERVL -2 525 268 6 1805 25 31 0 0 chr1 159952514 159952546 -37242886 + AT_rich Low_complexity Low_complexity 1 32 0 6 1805 252 316 126 6 chr1 159952630 159952805 -37242627 - L2 LINE L2 -2909 510 315 6 1805 573 268 0 31 chr1 159953022 159953149 -37242283 + RSINE1 SINE B4 2 124 -41 6 1805 216 0 0 0 chr1 159953149 159953173 -37242259 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1805 225 0 0 0 chr1 159953203 159953228 -37242204 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1805 1949 163 3 0 chr1 159953266 159953591 -37241841 - ORR1A3 LTR MaLR 0 326 1 6 1805 270 0 0 0 chr1 159954661 159954691 -37240741 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 6 1805 256 327 75 61 chr1 159954729 159955009 -37240423 - L1MA8 LINE L1 -39 6252 5969 6 1805 570 243 88 0 chr1 159955296 159955432 -37240000 - B1F1 SINE Alu -1 148 1 6 1805 3578 257 65 53 chr1 159955435 159957258 -37238174 - L1M2 LINE L1 -1535 4608 2765 6 1805 324 0 0 0 chr1 159957285 159957321 -37238111 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1805 651 293 83 23 chr1 159957357 159957622 -37237810 - B4A SINE B4 -10 282 2 6 1805 810 259 30 10 chr1 159957643 159957842 -37237590 + B3 SINE B2 1 203 -13 6 1805 194 130 65 0 chr1 159959449 159959495 -37235937 + T-rich Low_complexity Low_complexity 2 50 0 6 1805 375 248 0 0 chr1 159959539 159959692 -37235740 + CT-rich Low_complexity Low_complexity 2 154 0 6 1805 257 289 31 12 chr1 159960021 159960182 -37235250 - L1MC3 LINE L1 -162 7623 7460 6 1805 956 333 70 67 chr1 159960578 159961224 -37234208 + MLT1-int LTR MaLR 1 648 -723 6 1805 315 344 11 11 chr1 159961580 159961721 -37233711 + MLT1-int LTR MaLR 964 1097 -392 6 1805 1505 250 74 7 chr1 159961873 159962413 -37233019 - L1MCb LINE L1 -2956 3608 3033 6 1805 25 51 0 0 chr1 159962469 159962508 -37232924 + AT_rich Low_complexity Low_complexity 1 39 0 6 1805 315 311 143 7 chr1 159962604 159963000 -37232432 - L1MCb LINE L1 -3672 2892 2434 6 1805 1086 113 24 13 chr1 159963048 159963239 -37232193 - B2_Mm2 SINE B2 -9 207 5 6 1805 347 223 61 50 chr1 159963312 159963411 -37232021 - L1MCb LINE L1 -5646 1105 1006 6 1805 376 355 46 38 chr1 159963457 159963718 -37231714 - L1MCb LINE L1 -5210 835 573 6 1805 218 253 12 62 chr1 159963744 159963824 -37231608 + CT-rich Low_complexity Low_complexity 4 79 0 6 1805 452 341 84 27 chr1 159963835 159964348 -37231084 - L1MCb LINE L1 -5495 550 9 6 1805 2109 164 44 24 chr1 159964719 159965132 -37230300 - MTC LTR MaLR 0 421 1 6 1805 200 184 0 20 chr1 159965202 159965252 -37230180 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1805 324 0 0 0 chr1 159965692 159965728 -37229704 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1805 429 129 0 0 chr1 159965728 159965797 -37229635 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1805 519 95 0 0 chr1 159966062 159966136 -37229296 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1805 204 241 55 18 chr1 159966259 159966314 -37229118 + MIR SINE MIR 201 257 -5 7 1805 2734 154 66 28 chr1 159966330 159966863 -37228569 - RLTR31_Mm LTR ERVK -5 556 4 7 1805 657 69 0 0 chr1 159966863 159966950 -37228482 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 1805 488 16 16 0 chr1 159967511 159967572 -37227860 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 7 1805 2239 261 108 23 chr1 159967577 159968394 -37227038 - Lx8 LINE L1 -145 7328 6443 7 1805 242 225 16 139 chr1 159968603 159968732 -37226700 - L1MA6 LINE L1 0 6300 6188 7 1805 808 282 170 3 chr1 159969141 159969447 -37225985 - ORR1E LTR MaLR -2 357 1 7 1805 488 288 172 29 chr1 159969870 159970258 -37225174 - MLT1H LTR MaLR -23 466 66 7 1805 372 77 0 0 chr1 159970862 159970914 -37224518 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1805 492 152 0 0 chr1 159971736 159971815 -37223617 + MADE2 DNA Mariner 1 79 -1 7 1805 4595 120 63 3 chr1 159972723 159973418 -37222014 - RMER19A LTR ERVK 0 737 1 7 1805 335 314 88 0 chr1 159974789 159974891 -37220541 + PB1 SINE Alu 5 115 -12 7 1805 200 238 32 0 chr1 159974897 159974960 -37220472 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1805 180 179 0 0 chr1 159974966 159975005 -37220427 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1805 457 248 72 14 chr1 159975326 159975465 -37219967 + B1F2 SINE Alu 3 149 0 7 1805 198 0 0 0 chr1 159975465 159975487 -37219945 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1805 499 40 27 0 chr1 159975875 159975949 -37219483 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 7 1805 225 108 0 0 chr1 159977658 159977695 -37217737 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1805 215 152 22 0 chr1 159979609 159979655 -37215777 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 7 1805 314 32 79 16 chr1 159981950 159982013 -37213419 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 7 1805 416 285 51 32 chr1 159982057 159982213 -37213219 + RLTR14 LTR ERV1 224 382 0 7 1805 462 197 0 0 chr1 159983204 159983326 -37212106 + GA-rich Low_complexity Low_complexity 5 126 0 7 1805 243 0 0 0 chr1 159983641 159983668 -37211764 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 7 1805 2383 186 20 157 chr1 159983790 159984498 -37210934 - RMER19C LTR ERVK 0 611 1 7 1805 321 281 11 22 chr1 159986096 159986187 -37209245 - BC1_Mm scRNA scRNA -58 94 5 7 1805 236 272 98 12 chr1 159986284 159986366 -37209066 - PB1D10 SINE Alu -28 89 1 7 1805 202 386 33 33 chr1 159986567 159986658 -37208774 - MIR SINE MIR -165 97 7 7 1805 228 292 35 26 chr1 159986701 159986817 -37208615 - L1MA9 LINE L1 -25 6287 6171 7 1805 254 291 105 14 chr1 159986999 159987142 -37208290 - RMER12 LTR ERVK -467 855 700 7 1805 495 273 180 11 chr1 159987192 159987370 -37208062 - B3 SINE B2 -1 215 8 7 1805 411 157 0 0 chr1 159987395 159987503 -37207929 + A-rich Low_complexity Low_complexity 1 108 0 7 1805 232 357 104 67 chr1 159987941 159988076 -37207356 + L2c LINE L2 3198 3350 -37 7 1805 282 56 0 0 chr1 159988789 159988825 -37206607 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1805 852 297 66 12 chr1 159988847 159989089 -37206343 - B4A SINE B4 -34 258 4 7 1805 627 326 102 23 chr1 159991341 159991568 -37203864 - B4A SINE B4 -27 265 19 7 1805 61 0 0 0 chr1 159992880 159992941 -37202491 + AT_rich Low_complexity Low_complexity 1 61 0 7 1805 183 245 75 0 chr1 159992992 159993045 -37202387 - L3b LINE CR1 -110 372 316 7 1805 450 311 104 52 chr1 159993065 159993258 -37202174 + MER63A DNA AcHobo 1 203 -7 7 1805 22 0 0 0 chr1 159993509 159993531 -37201901 + AT_rich Low_complexity Low_complexity 1 22 0 7 1805 321 118 0 0 chr1 159993715 159993766 -37201666 + (TCCCC)n Simple_repeat Simple_repeat 4 54 0 7 1805 220 185 0 36 chr1 159993872 159993928 -37201504 + T-rich Low_complexity Low_complexity 1 54 0 7 1805 218 284 52 21 chr1 159995064 159995161 -37200271 + MIRb SINE MIR 111 210 -58 7 1805 259 275 29 0 chr1 159996138 159996207 -37199225 - ID4_ SINE ID -10 73 3 7 1805 415 319 13 34 chr1 159996218 159996367 -37199065 - B1_Mus1 SINE Alu -2 146 1 7 1805 342 273 192 0 chr1 159996454 159996553 -37198879 + B3A SINE B2 5 122 -76 7 1805 483 18 0 0 chr1 159996578 159996634 -37198798 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1805 4064 56 29 0 chr1 159996677 159997198 -37198234 + L1Md_F3 LINE L1 6048 6583 -1 7 1805 389 276 11 11 chr1 159997479 159997567 -37197865 + 5S rRNA rRNA 1 88 -33 7 1805 946 148 0 20 chr1 159998182 159998334 -37197098 - B1_Mur3 SINE Alu 0 149 1 7 1805 24 32 0 0 chr1 159998685 159998716 -37196716 + AT_rich Low_complexity Low_complexity 1 31 0 7 1805 273 227 13 90 chr1 159999245 159999366 -37196066 + MIRb SINE MIR 55 163 -45 7 1805 311 381 52 11 chr1 159999368 159999559 -37195873 - MIR SINE MIR -16 246 48 7 1805 438 20 0 0 chr1 159999737 159999788 -37195644 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1805 596 252 22 0 chr1 160001042 160001177 -37194255 - B1F SINE Alu -11 138 1 1 1805 517 332 124 38 chr1 160002748 160003014 -37192418 + B4A SINE B4 4 292 0 2 1805 389 54 18 0 chr1 160003039 160003095 -37192337 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1805 377 371 88 21 chr1 160003789 160004312 -37191120 + HERV16-int LTR ERVL 938 1495 -3501 4 1805 342 0 0 0 chr1 160004524 160004562 -37190870 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1805 429 255 204 37 chr1 160005040 160005231 -37190201 - URR1B DNA MER1_type 0 225 3 6 1805 423 367 61 38 chr1 160005302 160005823 -37189609 + HERV16-int LTR ERVL 2426 2958 -2038 4 1805 191 61 0 29 chr1 160005913 160005947 -37189485 + (CAAAC)n Simple_repeat Simple_repeat 3 35 0 7 1805 753 322 72 46 chr1 160006018 160006366 -37189066 + MTEa LTR MaLR 1 357 -22 8 1805 9246 85 6 19 chr1 160006549 160008133 -37187299 - L1_Mus3 LINE L1 0 6638 5104 9 1805 1063 116 0 0 chr1 160008133 160008280 -37187152 - B1_Mm SINE Alu 0 147 1 1 1805 9246 111 5 44 chr1 160008280 160008332 -37187100 - L1_Mus3 LINE L1 -780 5103 5066 9 1805 396 0 0 0 chr1 160008332 160008376 -37187056 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1805 9246 111 5 44 chr1 160008376 160009054 -37186378 - L1_Mus3 LINE L1 -818 5065 4382 9 1805 490 135 0 0 chr1 160009054 160009128 -37186304 - U3 snRNA snRNA -142 75 2 1 1805 1140 119 0 0 chr1 160010816 160010993 -37184439 + (TCC)n Simple_repeat Simple_repeat 2 178 0 1 1805 959 156 6 0 chr1 160011000 160011179 -37184253 + CT-rich Low_complexity Low_complexity 1 180 0 1 1805 717 182 38 0 chr1 160011220 160011352 -37184080 - B1_Mur3 SINE Alu -8 141 5 1 1805 514 356 55 21 chr1 160012455 160012745 -37182687 - L2c LINE L2 -164 3223 2924 1 1805 438 252 29 0 chr1 160013727 160013830 -37181602 + MLT1H LTR MaLR 10 115 -434 1 1805 250 274 36 0 chr1 160014220 160014304 -37181128 + MLT1H LTR MaLR 462 548 -1 1 1805 216 324 68 27 chr1 160014818 160014964 -37180468 - MIR SINE MIR -1 261 110 1 1805 260 27 0 26 chr1 160015136 160015174 -37180258 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1805 330 91 0 0 chr1 160016574 160016629 -37178803 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1805 750 301 66 22 chr1 160016646 160016918 -37178514 - B4A SINE B4 -8 284 1 2 1805 1666 161 42 26 chr1 160017035 160017348 -37178084 - ORR1A4 LTR MaLR -11 318 1 2 1805 637 230 14 0 chr1 160017530 160017678 -37177754 + Lx8 LINE L1 6709 6858 -615 2 1805 306 243 168 0 chr1 160017990 160018097 -37177335 + Lx8 LINE L1 6868 6992 -481 2 1805 242 320 0 39 chr1 160018110 160018237 -37177195 + Lx8 LINE L1 7349 7470 -3 2 1805 194 327 66 66 chr1 160018382 160018503 -37176929 - L3 LINE CR1 -1440 3049 2929 2 1805 315 285 45 30 chr1 160018527 160018661 -37176771 + L3b LINE CR1 29 164 -318 2 1805 288 261 43 35 chr1 160021086 160021201 -37174231 + PB1D10 SINE Alu 2 117 0 2 1805 310 269 30 0 chr1 160021215 160021282 -37174150 + ID SINE ID 7 75 -149 2 1805 227 364 91 23 chr1 160021224 160021356 -37174076 + B3A SINE B2 16 156 -42 2 1805 203 397 0 0 chr1 160021544 160021607 -37173825 + L2b LINE L2 3313 3375 0 2 1805 372 22 0 0 chr1 160022358 160022403 -37173029 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1805 800 78 17 0 chr1 160022492 160022608 -37172824 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 3 1805 749 67 0 9 chr1 160022614 160022719 -37172713 + (TTC)n Simple_repeat Simple_repeat 3 106 0 3 1805 261 344 101 31 chr1 160023048 160023177 -37172255 + MTE2a LTR MaLR 1 138 -241 3 1805 427 364 27 27 chr1 160023191 160023414 -37172018 + MT2A LTR ERVL 159 381 -152 3 1805 1733 180 13 84 chr1 160023432 160023813 -37171619 + ORR1B1 LTR MaLR 1 386 -8 3 1805 2921 83 30 5 chr1 160023923 160024320 -37171112 + MTB_Mm LTR MaLR 1 407 0 3 1805 429 54 0 0 chr1 160024333 160024389 -37171043 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1805 872 176 0 4 chr1 160025654 160025926 -37169506 + (TATATG)n Simple_repeat Simple_repeat 1 270 0 3 1805 304 377 45 32 chr1 160025937 160026184 -37169248 + MIR SINE MIR 3 252 -10 3 1805 225 0 0 0 chr1 160026241 160026266 -37169166 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1805 285 340 77 91 chr1 160026460 160026810 -37168622 + MLT1A0 LTR MaLR 21 365 0 4 1805 1665 174 87 15 chr1 160026862 160027195 -37168237 - ORR1D1 LTR MaLR -17 357 1 4 1805 238 151 0 86 chr1 160027261 160027294 -37168138 + T-rich Low_complexity Low_complexity 21 53 0 4 1805 1160 61 0 7 chr1 160027294 160027442 -37167990 - B1_Mus1 SINE Alu 0 148 2 4 1805 238 151 0 86 chr1 160027442 160027466 -37167966 + T-rich Low_complexity Low_complexity 1 20 0 4 1805 230 339 102 24 chr1 160028178 160028305 -37167127 + MIR SINE MIR 32 168 -94 4 1805 180 258 109 31 chr1 160028440 160028504 -37166928 - L2b LINE L2 -20 3355 3287 4 1805 403 369 189 35 chr1 160029878 160030195 -37165237 + LTR16D LTR ERVL 178 543 -108 4 1805 387 0 0 0 chr1 160030208 160030251 -37165181 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1805 640 215 28 0 chr1 160030434 160030578 -37164854 + Lx9 LINE L1 7337 7484 -160 5 1805 242 173 77 0 chr1 160030585 160030689 -37164743 + (TA)n Simple_repeat Simple_repeat 2 113 0 5 1805 231 191 0 0 chr1 160030693 160030740 -37164692 + Lx9 LINE L1 7113 7159 -485 5 1805 268 165 113 0 chr1 160030752 160030849 -37164583 + Lx9 LINE L1 7532 7639 -5 5 1805 372 254 56 0 chr1 160031162 160031288 -37164144 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 1805 290 318 0 0 chr1 160031509 160031572 -37163860 + PB1D10 SINE Alu 8 70 -47 5 1805 202 290 170 0 chr1 160032403 160032503 -37162929 - MIRb SINE MIR -78 190 74 5 1805 1983 155 47 28 chr1 160032600 160032964 -37162468 - ORR1B1 LTR MaLR 0 394 24 5 1805 646 293 72 29 chr1 160035283 160035561 -37159871 + B4A SINE B4 3 292 0 5 1805 201 220 0 63 chr1 160035562 160035625 -37159807 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 1805 237 321 68 15 chr1 160035636 160035769 -37159663 + MIR3 SINE MIR 67 206 -2 5 1805 729 301 57 82 chr1 160037067 160037433 -37157999 + ORR1E LTR MaLR 1 357 -2 6 1805 553 220 296 0 chr1 160037709 160037868 -37157564 + B3 SINE B2 1 206 -10 6 1805 303 331 63 25 chr1 160038429 160038587 -37156845 - L1MC4a LINE L1 -1971 5911 5748 6 1806 419 328 62 63 chr1 160041056 160041400 -37154032 + ORR1E LTR MaLR 20 358 -12 6 1806 189 0 0 0 chr1 160043474 160043495 -37151937 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1806 401 77 359 0 chr1 160043674 160043752 -37151680 + L1_Mur2 LINE L1 2805 2910 -2967 6 1806 275 218 53 125 chr1 160044154 160044231 -37151201 + RMER17A LTR ERVK 347 422 -329 6 1806 306 73 0 0 chr1 160044231 160044272 -37151160 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1806 275 218 53 125 chr1 160044272 160044346 -37151086 + RMER17A LTR ERVK 423 487 -264 6 1806 1664 147 37 19 chr1 160044427 160044752 -37150680 + RMER1A Other Other 638 968 -62 6 1806 234 0 0 0 chr1 160044763 160044789 -37150643 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1806 189 0 0 0 chr1 160045537 160045558 -37149874 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1806 349 307 197 26 chr1 160045568 160045832 -37149600 + LTR40b LTR ERVL 54 362 -100 7 1806 1296 41 18 0 chr1 160045966 160046135 -37149297 - L1Md_F3 LINE L1 -14 6570 6399 7 1806 797 21 0 0 chr1 160046135 160046231 -37149201 + L1Md_F3 LINE L1 6026 6121 -463 7 1806 254 283 52 86 chr1 160046430 160046546 -37148886 + MLT1H2 LTR MaLR 108 219 -270 7 1806 1355 73 0 0 chr1 160047871 160048050 -37147382 + L1Md_T LINE L1 6404 6582 0 7 1806 432 311 79 49 chr1 160049372 160049639 -37145793 - L2 LINE L2 -885 2534 2260 7 1806 666 0 0 0 chr1 160049733 160049807 -37145625 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1806 1754 256 40 52 chr1 160050670 160050752 -37144680 - Lx5 LINE L1 -20 7030 6952 7 1806 962 62 8 0 chr1 160050752 160050882 -37144550 + (TCC)n Simple_repeat Simple_repeat 3 133 0 7 1806 1754 256 40 52 chr1 160050882 160051351 -37144081 - Lx5 LINE L1 -99 6951 6486 7 1806 513 0 0 0 chr1 160051371 160051428 -37144004 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 8 1806 542 286 138 22 chr1 160052271 160052456 -37142976 - MLT1A0 LTR MaLR -30 360 120 8 1806 3077 135 24 6 chr1 160052456 160052964 -37142468 - Lx2A1 LINE L1 -6 7002 6486 8 1806 542 284 145 21 chr1 160052964 160053032 -37142400 - MLT1A0 LTR MaLR -246 119 53 8 1806 1115 285 99 0 chr1 160053499 160053843 -37141589 + MTE2b LTR MaLR 1 378 -1 8 1806 377 250 71 12 chr1 160054406 160054491 -37140941 - B3A SINE B2 -108 90 1 8 1806 216 0 0 0 chr1 160054688 160054712 -37140720 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1806 378 94 0 0 chr1 160054712 160054776 -37140656 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 1806 380 359 82 0 chr1 160056000 160056170 -37139262 - MIRb SINE MIR -25 243 60 8 1806 276 302 8 8 chr1 160056450 160056570 -37138862 + L1_Mur3 LINE L1 2777 2896 -2984 8 1806 243 291 62 80 chr1 160057269 160057493 -37137939 + L1_Mur3 LINE L1 889 1108 -6604 8 1806 239 231 91 55 chr1 160057545 160057710 -37137722 + L1M3 LINE L1 3013 3183 -2957 9 1806 851 272 138 21 chr1 160057758 160058033 -37137399 + L1_Mur3 LINE L1 3680 3981 -1899 8 1806 819 53 0 0 chr1 160058033 160058146 -37137286 + (TG)n Simple_repeat Simple_repeat 2 114 0 9 1806 851 272 138 21 chr1 160058146 160058350 -37137082 + L1_Mur3 LINE L1 3982 4214 -1666 8 1806 874 302 55 25 chr1 160058409 160058684 -37136748 - MTEa LTR MaLR -82 297 15 9 1806 190 206 51 10 chr1 160058835 160058933 -37136499 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 9 1806 796 258 42 10 chr1 160059866 160060026 -37135406 + B3A SINE B2 1 164 -34 9 1806 480 111 0 0 chr1 160060026 160060107 -37135325 + (CA)n Simple_repeat Simple_repeat 1 81 0 9 1806 796 258 42 10 chr1 160060107 160060138 -37135294 + B3A SINE B2 165 198 0 9 1806 363 333 140 7 chr1 160060230 160060508 -37134924 + L2a LINE L2 1958 2272 -1147 9 1806 1820 281 121 52 chr1 160060670 160061417 -37134015 + LTR82A LTR ERVL 58 855 -17 9 1806 208 367 50 45 chr1 160061592 160061989 -37133443 + L2a LINE L2 2668 3066 -353 9 1806 299 268 152 51 chr1 160062082 160062259 -37133173 + L2a LINE L2 3215 3409 -17 9 1806 468 288 75 8 chr1 160062589 160062722 -37132710 + B1F SINE Alu 1 142 -7 9 1806 565 330 84 16 chr1 160063226 160063593 -37131839 - L2 LINE L2 -1216 2203 1812 9 1806 1230 62 0 14 chr1 160064310 160064458 -37130974 - B1_Mus2 SINE Alu 0 147 2 1 1806 600 87 0 0 chr1 160065598 160065690 -37129742 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1806 391 324 180 25 chr1 160065691 160065935 -37129497 - B4 SINE B4 -10 282 1 1 1806 443 240 131 8 chr1 160067751 160067873 -37127559 + B4A SINE B4 114 250 -42 1 1806 234 81 0 0 chr1 160067873 160067910 -37127522 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1806 1182 82 7 0 chr1 160067910 160068057 -37127375 - B1_Mus1 SINE Alu 0 148 1 1 1806 290 246 0 47 chr1 160068117 160068266 -37127166 + (CATA)n Simple_repeat Simple_repeat 4 145 0 1 1806 255 203 0 0 chr1 160068302 160068366 -37127066 + (CATA)n Simple_repeat Simple_repeat 3 66 0 1 1806 366 23 0 0 chr1 160068380 160068423 -37127009 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1806 353 329 121 39 chr1 160068506 160068985 -37126447 + L2a LINE L2 2897 3425 -1 1 1806 21 36 0 0 chr1 160068995 160069023 -37126409 + AT_rich Low_complexity Low_complexity 1 28 0 1 1806 393 39 0 0 chr1 160069026 160069077 -37126355 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1806 257 326 43 0 chr1 160069077 160069169 -37126263 - L3 LINE CR1 -362 4127 4032 1 1806 278 342 60 30 chr1 160069454 160069686 -37125746 + L2 LINE L2 2345 2583 -836 1 1806 303 93 0 0 chr1 160071293 160071336 -37124096 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1 1806 255 339 37 0 chr1 160071864 160071973 -37123459 + MIRb SINE MIR 75 187 -81 1 1806 279 336 57 43 chr1 160072031 160072171 -37123261 + MLT1A0 LTR MaLR 1 142 -223 1 1806 184 214 43 0 chr1 160073055 160073125 -37122307 + CT-rich Low_complexity Low_complexity 4 76 0 1 1806 350 311 119 36 chr1 160073576 160073829 -37121603 + LTR79 LTR ERVL 178 451 -76 1 1806 220 190 152 17 chr1 160073885 160073944 -37121488 + L2c LINE L2 3321 3387 0 1 1806 793 89 16 0 chr1 160073988 160074112 -37121320 + (TC)n Simple_repeat Simple_repeat 2 127 0 1 1806 950 228 67 29 chr1 160075076 160075284 -37120148 + B3 SINE B2 1 216 0 1 1806 1503 260 122 26 chr1 160075356 160075981 -37119451 + L1MB5 LINE L1 5477 6159 -15 1 1806 200 34 0 33 chr1 160076818 160076848 -37118584 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1 1806 492 18 0 0 chr1 160077197 160077254 -37118178 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1806 284 273 22 33 chr1 160078922 160079013 -37116419 + ID_B1 SINE B4 81 170 -54 1 1806 233 170 0 36 chr1 160079017 160079072 -37116360 + GA-rich Low_complexity Low_complexity 3 55 0 1 1806 474 178 0 0 chr1 160079060 160079150 -37116282 + A-rich Low_complexity Low_complexity 1 90 0 1 1806 22853 5 0 4 chr1 160079257 160081786 -37113646 + L1_Mm LINE L1 3063 5586 -297 1 1806 9658 1 0 0 chr1 160081786 160082782 -37112650 + L1Md_A LINE L1 5587 6582 0 1 1806 22853 5 0 4 chr1 160082782 160082799 -37112633 + L1_Mm LINE L1 5587 5599 -284 1 1806 197 33 33 0 chr1 160082891 160082921 -37112511 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1806 1103 45 15 7 chr1 160082921 160083056 -37112376 - B1_Mus2 SINE Alu -11 136 1 1 1806 1370 322 84 6 chr1 160083114 160083648 -37111784 - Lx8 LINE L1 -1 7472 6897 1 1806 324 0 0 0 chr1 160083651 160083687 -37111745 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1806 535 14 28 0 chr1 160083696 160083768 -37111664 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 1806 880 349 36 88 chr1 160083770 160084191 -37111241 - MT2A LTR ERVL -72 461 63 1 1806 262 330 42 17 chr1 160084132 160084252 -37111180 - MTD LTR MaLR -267 152 30 1 1806 270 0 0 0 chr1 160084413 160084443 -37110989 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1806 965 249 73 26 chr1 160084495 160084767 -37110665 + ORR1E LTR MaLR 71 355 -4 1 1806 199 114 45 0 chr1 160086173 160086217 -37109215 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1806 321 217 0 36 chr1 160086218 160086328 -37109104 + GA-rich Low_complexity Low_complexity 2 107 0 1 1806 837 121 0 0 chr1 160086334 160086499 -37108933 + (GA)n Simple_repeat Simple_repeat 2 166 0 1 1806 315 0 0 0 chr1 160087619 160087654 -37107778 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1806 243 325 25 0 chr1 160088653 160088733 -37106699 - ID4_ SINE ID 0 83 2 1 1806 226 287 185 34 chr1 160088848 160088967 -37106465 + MIR3 SINE MIR 7 143 -65 1 1806 398 307 104 5 chr1 160089071 160089264 -37106168 - MIRc SINE MIR -3 265 54 1 1806 2214 137 26 9 chr1 160089406 160089753 -37105679 + ORR1B1 LTR MaLR 42 394 0 1 1806 964 258 65 6 chr1 160089892 160090177 -37105255 + MTE2a LTR MaLR 1 379 0 1 1806 218 257 53 13 chr1 160090497 160090572 -37104860 + L2c LINE L2 3304 3381 -6 1 1806 423 0 0 0 chr1 160090683 160090730 -37104702 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1 1806 1982 124 46 20 chr1 160090732 160091037 -37104395 - Lx3A LINE L1 -16 6965 6653 1 1806 390 91 0 0 chr1 160091133 160091188 -37104244 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1806 367 362 23 30 chr1 160093051 160093316 -37102116 + L2 LINE L2 2695 2957 -462 1 1806 244 267 0 62 chr1 160093484 160093564 -37101868 + ID4_ SINE ID 7 81 -2 1 1806 306 0 0 0 chr1 160093802 160093836 -37101596 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1806 217 291 109 21 chr1 160094449 160094558 -37100874 - L2b LINE L2 -16 3371 3225 1 1806 222 91 0 0 chr1 160095154 160095187 -37100245 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 1 1806 872 258 24 5 chr1 160095502 160095712 -37099720 + B3 SINE B2 2 215 -1 1 1806 1718 122 11 8 chr1 160095723 160095987 -37099445 - RMER19B LTR ERVK -7 895 631 1 1806 3705 126 78 5 chr1 160096570 160097161 -37098271 - RMER19B LTR ERVK -268 634 1 1 1806 990 143 13 20 chr1 160097165 160097315 -37098117 - B1_Mur3 SINE Alu 0 149 1 1 1806 377 291 55 0 chr1 160097397 160097507 -37097925 + PB1D10 SINE Alu 1 116 -1 1 1806 24 0 0 0 chr1 160097519 160097543 -37097889 + AT_rich Low_complexity Low_complexity 1 24 0 1 1806 305 250 32 32 chr1 160097804 160097899 -37097533 - Tigger7 DNA MER2_type -1443 1048 954 1 1806 765 330 37 49 chr1 160097890 160098218 -37097214 - Tigger7 DNA MER2_type -2143 348 25 1 1806 1038 219 114 184 chr1 160098267 160098518 -37096914 - MTEb LTR MaLR -2 377 173 1 1806 1012 273 62 14 chr1 160098518 160098793 -37096639 - B4A SINE B4 -2 290 3 1 1806 1038 219 114 184 chr1 160098793 160098944 -37096488 - MTEb LTR MaLR -207 172 3 1 1806 180 0 0 0 chr1 160100558 160100578 -37094854 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1806 219 139 0 0 chr1 160101158 160101194 -37094238 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1806 21 0 0 0 chr1 160101470 160101491 -37093941 + AT_rich Low_complexity Low_complexity 1 21 0 1 1806 938 67 143 0 chr1 160102913 160103032 -37092400 + B1_Mus1 SINE Alu 1 136 -12 1 1806 314 0 49 0 chr1 160103033 160103074 -37092358 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1806 480 287 29 92 chr1 160103167 160103340 -37092092 + RSINE1 SINE B4 4 165 0 1 1806 421 268 6 9 chr1 160103341 160103659 -37091773 + (CA)n Simple_repeat Simple_repeat 1 317 0 1 1806 1295 161 36 14 chr1 160103781 160104001 -37091431 - URR1B DNA MER1_type 0 225 1 1 1806 1092 215 49 70 chr1 160104891 160105276 -37090156 - Lx9 LINE L1 -3 7641 7265 1 1806 290 279 21 41 chr1 160105277 160105374 -37090058 + Lx9 LINE L1 7162 7256 -388 1 1806 1450 283 86 49 chr1 160105375 160105921 -37089511 + MLT2B3 LTR ERVL 117 685 -32 1 1806 3556 47 25 2 chr1 160106235 160106339 -37089093 + L1Md_F2 LINE L1 5131 5243 -640 1 1806 189 74 0 0 chr1 160106339 160106366 -37089066 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1806 3556 47 25 2 chr1 160106366 160106705 -37088727 + L1Md_F2 LINE L1 5244 5584 -299 1 1806 8419 48 3 34 chr1 160106707 160107735 -37087697 + L1Md_F2 LINE L1 5587 6582 0 1 1806 189 147 0 0 chr1 160107885 160107919 -37087513 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1806 196 283 0 0 chr1 160108874 160108927 -37086505 - L2a LINE L2 -4 3422 3370 1 1806 190 186 44 44 chr1 160108947 160108992 -37086440 - MIRc SINE MIR -116 152 108 1 1806 528 59 0 0 chr1 160109347 160109415 -37086017 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1806 1355 122 0 5 chr1 160109593 160109783 -37085649 - B2_Mm2 SINE B2 -6 189 1 1 1806 386 323 52 52 chr1 160110079 160110308 -37085124 - MLT1D LTR MaLR -270 235 7 1 1806 207 0 0 0 chr1 160111887 160111910 -37083522 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1806 237 321 158 49 chr1 160112433 160112636 -37082796 + MER44B DNA MER2_type 9 233 -317 1 1806 290 309 36 67 chr1 160112901 160113126 -37082306 - L2a LINE L2 -2 3424 3207 1 1806 314 295 14 16 chr1 160114301 160114448 -37080984 + MLT1C LTR MaLR 23 175 -215 1 1806 301 246 43 0 chr1 160114452 160114521 -37080911 + Lx8 LINE L1 7178 7249 -224 1 1806 1263 153 9 5 chr1 160114529 160114745 -37080687 + URR1A DNA MER1_type 1 217 -9 1 1806 243 156 169 121 chr1 160114750 160114874 -37080558 + Lx8 LINE L1 7269 7398 -75 1 1806 298 224 0 15 chr1 160114986 160115054 -37080378 - PB1D10 SINE Alu -26 91 25 1 1806 1107 315 59 20 chr1 160115881 160116389 -37079043 + MLT1E3 LTR MaLR 3 530 -94 1 1806 796 206 184 5 chr1 160116888 160117078 -37078354 + URR1A DNA MER1_type 3 226 0 1 1806 1178 156 121 0 chr1 160117546 160117803 -37077629 + Lx9 LINE L1 7357 7644 0 1 1806 644 255 7 7 chr1 160118493 160118639 -37076793 - RSINE1 SINE B4 -17 148 3 1 1806 1038 76 0 0 chr1 160119032 160119176 -37076256 + B1_Mus2 SINE Alu 4 147 0 1 1806 258 175 0 0 chr1 160120653 160120733 -37074699 + A-rich Low_complexity Low_complexity 1 80 0 1 1806 322 349 0 0 chr1 160120894 160121000 -37074432 + MLT1A1 LTR MaLR 291 396 -12 1 1806 469 277 41 29 chr1 160121610 160121781 -37073651 + MER58B DNA MER1_type 135 307 -34 1 1806 198 103 0 0 chr1 160122590 160122619 -37072813 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1806 282 29 0 0 chr1 160123715 160123750 -37071682 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1806 271 60 40 0 chr1 160123977 160124027 -37071405 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1806 1267 202 90 71 chr1 160125208 160125575 -37069857 - ORR1D1 LTR MaLR 0 374 1 2 1806 246 95 0 0 chr1 160125865 160125907 -37069525 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 1806 195 69 0 0 chr1 160127975 160128004 -37067428 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 1806 1655 123 79 104 chr1 160131014 160131088 -37064344 - ORR1B1 LTR MaLR -8 386 318 2 1806 4729 172 34 57 chr1 160131088 160132012 -37063420 + RMER19B LTR ERVK 1 902 0 2 1806 1655 123 79 104 chr1 160132012 160132292 -37063140 - ORR1B1 LTR MaLR -77 317 41 2 1806 1050 216 19 5 chr1 160132699 160132908 -37062524 + B3 SINE B2 5 216 0 2 1806 459 274 0 0 chr1 160133110 160133212 -37062220 - ID_B1 SINE B4 -39 185 84 2 1806 296 333 55 14 chr1 160134407 160134553 -37060879 + MLT1A LTR MaLR 32 183 -191 2 1806 283 296 52 101 chr1 160135074 160135401 -37060031 - MLT2C2 LTR ERVL -110 354 44 2 1806 548 283 38 99 chr1 160135223 160135435 -37059997 - MLT1E3 LTR MaLR -395 229 31 2 1806 3554 13 5 0 chr1 160135556 160135950 -37059482 + MTA_Mm LTR MaLR 1 396 0 2 1806 204 67 0 0 chr1 160136426 160136456 -37058976 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2 1806 888 153 0 0 chr1 160136459 160136629 -37058803 + (TG)n Simple_repeat Simple_repeat 1 170 0 2 1806 601 209 86 26 chr1 160136632 160136784 -37058648 - RSINE1 SINE B4 -1 164 4 2 1806 736 265 5 41 chr1 160137693 160137913 -37057519 - B3 SINE B2 -4 212 1 2 1806 329 229 0 14 chr1 160138053 160138124 -37057308 + PB1D7 SINE Alu 40 109 -11 2 1806 267 103 0 0 chr1 160138138 160138177 -37057255 + (CAGG)n Simple_repeat Simple_repeat 2 40 0 2 1806 1271 242 81 9 chr1 160138798 160139144 -37056288 - MTE2b LTR MaLR 0 379 9 2 1806 405 102 0 0 chr1 160139808 160139867 -37055565 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 2 1806 265 295 79 32 chr1 160141910 160142036 -37053396 - L2a LINE L2 -2 3424 3293 2 1806 706 190 56 61 chr1 160142854 160143050 -37052382 - ORR1C2 LTR MaLR 0 384 190 2 1806 260 203 0 28 chr1 160143079 160143150 -37052282 + GA-rich Low_complexity Low_complexity 1 69 0 2 1806 257 101 49 25 chr1 160143188 160143269 -37052163 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 2 1806 1163 82 0 0 chr1 160143269 160143416 -37052016 - B1_Mus2 SINE Alu 0 147 1 2 1806 571 157 157 0 chr1 160143422 160143543 -37051889 - ORR1C2 LTR MaLR -231 143 4 2 1806 739 258 10 31 chr1 160144242 160144434 -37050998 + B3 SINE B2 1 188 -28 2 1806 545 186 64 8 chr1 160144620 160144745 -37050687 - HAL1 LINE L1 -110 2397 2266 2 1806 306 0 0 0 chr1 160144782 160144816 -37050616 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1806 21 0 0 0 chr1 160145741 160145762 -37049670 + AT_rich Low_complexity Low_complexity 1 21 0 2 1806 217 312 62 23 chr1 160145883 160146011 -37049421 + MIR SINE MIR 101 233 -29 2 1806 401 224 27 27 chr1 160146241 160146351 -37049081 - ID_B1 SINE B4 -1 223 114 2 1806 525 14 27 13 chr1 160146590 160146665 -37048767 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1806 474 246 59 0 chr1 160147840 160147958 -37047474 - B1F SINE Alu -7 142 18 2 1806 462 313 53 39 chr1 160147958 160148046 -37047386 - ID_B1 SINE B4 -7 217 9 2 1806 1587 228 44 8 chr1 160148099 160148488 -37046944 + MTD LTR MaLR 3 405 -14 2 1806 360 0 0 0 chr1 160148930 160148970 -37046462 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1806 4308 155 45 19 chr1 160149066 160149861 -37045571 - Lx3C LINE L1 -2 6974 6159 2 1806 576 120 0 0 chr1 160151483 160151583 -37043849 + (TC)n Simple_repeat Simple_repeat 2 101 0 2 1806 519 17 0 0 chr1 160151591 160151651 -37043781 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1806 219 69 0 0 chr1 160152993 160153022 -37042410 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1806 186 396 4 18 chr1 160153483 160153609 -37041823 + MIRm SINE MIR 44 170 -98 2 1806 291 256 41 49 chr1 160154006 160154129 -37041303 - MER5A DNA MER1_type -40 149 28 2 1806 233 29 0 29 chr1 160154204 160154239 -37041193 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 2 1806 2088 129 3 6 chr1 160154312 160154624 -37040808 + RLTR10E LTR ERVK 1 311 0 2 1806 2936 81 15 7 chr1 160155887 160156298 -37039134 - L1_Mus3 LINE L1 -1 6637 6224 2 1806 195 42 0 0 chr1 160156366 160156390 -37039042 + (TGG)n Simple_repeat Simple_repeat 3 26 0 2 1806 342 67 0 0 chr1 160156390 160156435 -37038997 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1806 363 78 0 0 chr1 160157722 160157773 -37037659 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1806 201 156 0 0 chr1 160158334 160158366 -37037066 + CT-rich Low_complexity Low_complexity 2 33 0 2 1806 454 277 9 0 chr1 160158456 160158568 -37036864 - MER33 DNA MER1_type -205 119 7 2 1806 180 176 0 0 chr1 160159360 160159394 -37036038 + A-rich Low_complexity Low_complexity 1 34 0 2 1806 278 356 69 9 chr1 160160051 160160167 -37035265 - MLT1J2 LTR MaLR -324 124 2 2 1806 250 226 57 45 chr1 160160638 160160726 -37034706 - MTE2a LTR MaLR -13 366 278 2 1806 324 0 0 0 chr1 160160779 160160815 -37034617 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1806 845 325 148 113 chr1 160160999 160161088 -37034344 - MTE-int LTR MaLR -28 1552 1473 2 1806 1366 252 98 13 chr1 160161088 160161474 -37033958 + MTD LTR MaLR 1 419 0 2 1806 845 325 148 113 chr1 160161474 160162116 -37033316 - MTE-int LTR MaLR -108 1472 796 2 1806 297 349 75 41 chr1 160164044 160164486 -37030946 + ERVL-E-int LTR ERVL 1621 2077 -2919 2 1806 362 338 80 57 chr1 160164746 160165300 -37030132 + ERVL-E-int LTR ERVL 2391 2964 -2032 2 1806 1163 301 25 22 chr1 160165498 160165858 -37029574 - MTEa LTR MaLR 0 379 19 2 1806 931 280 128 17 chr1 160165913 160166265 -37029167 - MTD LTR MaLR -23 396 6 2 1806 281 301 152 32 chr1 160166450 160166608 -37028824 + ERVL-E-int LTR ERVL 3297 3473 -2194 2 1806 547 373 52 24 chr1 160166725 160167148 -37028284 + ERVL-E-int LTR ERVL 3658 4092 -1575 2 1806 295 256 39 0 chr1 160167551 160167629 -37027803 + L1M4 LINE L1 4273 4353 -1787 2 1806 1306 274 85 33 chr1 160167639 160168198 -37027234 + L1M4 LINE L1 4616 5209 -937 2 1806 1337 91 43 0 chr1 160168198 160168384 -37027048 + B2_Mm2 SINE B2 2 195 0 2 1806 1306 229 40 52 chr1 160168384 160168661 -37026771 + L1M4 LINE L1 5210 5488 -692 2 1806 637 338 42 7 chr1 160169064 160169353 -37026079 + L4 LINE RTE 1426 1724 -305 2 1806 202 121 0 29 chr1 160169389 160169423 -37026009 + CT-rich Low_complexity Low_complexity 3 35 0 2 1807 299 208 141 13 chr1 160170512 160170590 -37024842 + MER5A DNA MER1_type 13 100 -89 2 1807 188 346 24 12 chr1 160171350 160171432 -37024000 - MIRm SINE MIR -139 137 55 2 1807 705 193 235 32 chr1 160172986 160173173 -37022259 - URR1A DNA MER1_type 0 226 2 2 1807 467 258 0 22 chr1 160174919 160175101 -37020331 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1807 320 227 0 20 chr1 160175109 160175208 -37020224 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 2 1807 247 254 14 0 chr1 160175213 160175284 -37020148 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1807 22 70 0 0 chr1 160175466 160175509 -37019923 + AT_rich Low_complexity Low_complexity 1 43 0 2 1807 634 314 6 0 chr1 160179920 160180095 -37015337 - B3A SINE B2 -22 176 1 2 1807 333 159 176 9 chr1 160180247 160180355 -37015077 - Lx6 LINE L1 -28 7432 7307 2 1807 199 391 17 0 chr1 160180839 160180954 -37014478 - MIRc SINE MIR -119 149 33 2 1807 209 275 150 0 chr1 160181043 160181123 -37014309 - L2a LINE L2 -2 3424 3333 2 1807 270 340 36 27 chr1 160182261 160182373 -37013059 - ID_B1 SINE B4 -34 190 78 2 1807 255 93 0 0 chr1 160184326 160184369 -37011063 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1807 329 43 21 0 chr1 160186452 160186499 -37008933 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1807 683 171 0 16 chr1 160186553 160186678 -37008754 + B1_Mur4 SINE Alu 6 128 -22 2 1807 300 91 0 0 chr1 160187111 160187155 -37008277 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 2 1807 401 226 65 0 chr1 160187162 160187255 -37008177 - B1F SINE Alu -37 112 14 2 1807 330 98 0 0 chr1 160187261 160187312 -37008120 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 2 1807 521 253 66 85 chr1 160187594 160187913 -37007519 + RMER10A LTR ERVL 121 433 -9 2 1807 330 91 0 0 chr1 160189465 160189520 -37005912 + (T)n Simple_repeat Simple_repeat 1 55 0 2 1807 21 0 0 0 chr1 160190020 160190041 -37005391 + AT_rich Low_complexity Low_complexity 1 21 0 2 1807 498 109 0 0 chr1 160191973 160192065 -37003367 + (CCTG)n Simple_repeat Simple_repeat 1 92 0 2 1807 1332 51 0 0 chr1 160192065 160192242 -37003190 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2 1807 1086 101 14 0 chr1 160192761 160192909 -37002523 + B1_Mur4 SINE Alu 1 150 0 2 1807 24 0 0 0 chr1 160192973 160192997 -37002435 + AT_rich Low_complexity Low_complexity 1 24 0 2 1807 227 314 97 0 chr1 160193040 160193162 -37002270 - MIRm SINE MIR -120 148 11 2 1807 557 311 36 13 chr1 160193742 160193967 -37001465 + L2a LINE L2 363 592 -2827 2 1807 1137 27 0 32 chr1 160194305 160194459 -37000973 + L1Md_F3 LINE L1 6405 6553 -31 2 1807 209 33 33 0 chr1 160194459 160194489 -37000943 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1807 1043 148 0 6 chr1 160194493 160194670 -37000762 + URR1A DNA MER1_type 50 225 -1 2 1807 809 358 89 23 chr1 160194769 160195588 -36999844 + L2a LINE L2 1154 2026 -1393 2 1807 184 365 14 0 chr1 160195644 160195718 -36999714 + L2a LINE L2 3347 3421 -5 2 1807 396 0 0 0 chr1 160197653 160197697 -36997735 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1807 477 34 0 0 chr1 160198224 160198283 -36997149 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1807 654 296 65 27 chr1 160198617 160198954 -36996478 - Charlie1a DNA MER1_type -1 1454 1105 2 1807 1180 319 103 2 chr1 160199017 160199311 -36996121 - Charlie1a DNA MER1_type -559 896 568 2 1807 216 0 0 0 chr1 160199311 160199335 -36996097 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 1807 1180 319 103 2 chr1 160199335 160199620 -36995812 - Charlie1a DNA MER1_type -888 567 259 2 1807 492 18 0 0 chr1 160199628 160199685 -36995747 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1807 8275 65 2 1 chr1 160199768 160200815 -36994617 + Lx8 LINE L1 4870 5914 -1559 2 1807 620 238 164 21 chr1 160200836 160201025 -36994407 - B3 SINE B2 0 216 1 2 1807 5856 28 6 0 chr1 160201180 160201858 -36993574 + L1Md_F3 LINE L1 5901 6582 -2 2 1807 24 0 0 0 chr1 160203332 160203356 -36992076 + AT_rich Low_complexity Low_complexity 1 24 0 3 1807 674 274 0 0 chr1 160203391 160203537 -36991895 + B1F2 SINE Alu 1 146 -3 3 1807 225 204 37 0 chr1 160203882 160203936 -36991496 - MIRc SINE MIR -132 136 81 3 1807 254 277 31 0 chr1 160204030 160204095 -36991337 + PB1D7 SINE Alu 47 113 -7 3 1807 396 155 0 0 chr1 160204133 160204204 -36991228 + GA-rich Low_complexity Low_complexity 3 73 0 3 1807 266 343 115 11 chr1 160205006 160205180 -36990252 - MIR SINE MIR -19 243 52 3 1807 822 48 0 0 chr1 160205508 160205611 -36989821 + (GA)n Simple_repeat Simple_repeat 2 104 0 3 1807 761 110 28 28 chr1 160207433 160207611 -36987821 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 3 1807 256 338 27 27 chr1 160210507 160210656 -36984776 + MLT1H LTR MaLR 81 229 -320 3 1807 220 327 18 18 chr1 160211118 160211230 -36984202 - L3 LINE CR1 -670 3819 3708 3 1807 438 303 134 80 chr1 160211232 160211656 -36983776 + MLT1J2 LTR MaLR 1 447 -1 3 1807 432 0 0 0 chr1 160212088 160212136 -36983296 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1807 253 303 74 0 chr1 160212188 160212310 -36983122 - MIR SINE MIR -101 161 31 3 1807 193 291 164 8 chr1 160212419 160212547 -36982885 - L2c LINE L2 -45 3342 3195 3 1807 302 305 25 25 chr1 160213717 160213838 -36981594 + B1F SINE Alu 29 149 0 3 1807 362 273 18 9 chr1 160213838 160213949 -36981483 + GA-rich Low_complexity Low_complexity 2 113 0 3 1807 324 0 0 0 chr1 160214351 160214387 -36981045 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1807 288 77 0 0 chr1 160215159 160215198 -36980234 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1807 1133 131 20 40 chr1 160215948 160216147 -36979285 + B2_Mm2 SINE B2 1 195 0 3 1807 505 308 37 58 chr1 160216173 160216414 -36979018 + B4A SINE B4 1 236 -56 3 1807 558 0 0 0 chr1 160217274 160217336 -36978096 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1807 1061 90 0 6 chr1 160217593 160217749 -36977683 + (TTCC)n Simple_repeat Simple_repeat 1 155 0 3 1807 504 0 0 0 chr1 160217750 160217806 -36977626 + (CTTG)n Simple_repeat Simple_repeat 2 57 0 3 1807 524 280 67 99 chr1 160217847 160218129 -36977303 - B4 SINE B4 -14 278 6 3 1807 303 208 9 119 chr1 160220324 160220338 -36975094 - PB1D10 SINE Alu -20 97 71 3 1807 323 145 16 0 chr1 160220338 160220400 -36975032 - ID_B1 SINE B4 -59 165 103 3 1807 303 208 9 119 chr1 160220400 160220433 -36974999 - PB1D10 SINE Alu -20 70 1 3 1807 341 318 39 0 chr1 160220498 160220627 -36974805 - MER5A1 DNA MER1_type -24 142 9 3 1807 430 378 20 0 chr1 160222158 160222362 -36973070 - MIR SINE MIR -41 221 14 3 1807 250 327 27 36 chr1 160224218 160224329 -36971103 + RSINE1 SINE B4 38 147 -18 3 1807 450 0 0 0 chr1 160224337 160224387 -36971045 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1807 23 33 0 0 chr1 160224421 160224451 -36970981 + AT_rich Low_complexity Low_complexity 1 30 0 3 1807 213 98 18 89 chr1 160224635 160224691 -36970741 + B1_Mur4 SINE Alu 96 147 -3 3 1807 201 24 0 89 chr1 160225360 160225405 -36970027 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 3 1807 259 314 47 9 chr1 160226024 160226130 -36969302 - MIRb SINE MIR -39 229 120 3 1807 351 328 16 0 chr1 160226747 160226872 -36968560 + LTR16C LTR ERVL 3 129 -360 3 1807 304 400 100 4 chr1 160228425 160228696 -36966736 + MLT1E1A LTR MaLR 313 609 -71 3 1807 433 293 54 146 chr1 160228701 160228961 -36966471 + B4 SINE B4 3 238 -54 3 1807 232 313 0 0 chr1 160230559 160230626 -36964806 + tRNA-Ala-GCA tRNA tRNA 1 67 -8 3 1807 231 349 0 12 chr1 160230626 160230637 -36964795 + ID4_ SINE ID 25 83 0 3 1807 681 188 30 0 chr1 160232642 160232775 -36962657 + B1_Mur1 SINE Alu 1 137 -12 3 1807 1158 110 0 0 chr1 160232955 160233128 -36962304 + (TTCTC)n Simple_repeat Simple_repeat 5 177 0 3 1807 389 110 12 35 chr1 160233128 160233213 -36962219 + C-rich Low_complexity Low_complexity 2 84 0 3 1807 224 250 82 12 chr1 160233965 160234050 -36961382 - MIRb SINE MIR -14 254 164 3 1807 279 309 0 0 chr1 160234094 160234175 -36961257 + Tigger5 DNA MER2_type 142 222 -2184 3 1807 310 283 64 28 chr1 160234193 160234302 -36961130 + Tigger5 DNA MER2_type 2294 2406 0 3 1807 786 198 18 0 chr1 160234660 160234827 -36960605 - URR1A DNA MER1_type 0 226 57 3 1807 562 292 56 65 chr1 160234882 160235098 -36960334 + B3 SINE B2 2 215 -1 3 1807 403 245 20 10 chr1 160236646 160236745 -36958687 - RSINE1 SINE B4 -33 132 33 3 1807 496 144 49 33 chr1 160237106 160237228 -36958204 - Lx9 LINE L1 -1 7643 7520 3 1807 262 247 0 119 chr1 160238639 160238658 -36956774 - PB1D10 SINE Alu 0 117 29 3 1807 409 268 0 0 chr1 160238658 160238740 -36956692 - ID_B1 SINE B4 -33 191 110 3 1807 273 208 229 0 chr1 160238752 160238848 -36956584 + L1MC4a LINE L1 7754 7871 -11 3 1807 345 308 16 8 chr1 160239005 160239126 -36956306 + L1MC4 LINE L1 6754 6875 -1007 3 1807 400 248 88 9 chr1 160239128 160239242 -36956190 - MER63B DNA AcHobo -2 434 312 3 1807 261 206 66 40 chr1 160239318 160239394 -36956038 + L1MC4 LINE L1 6911 6988 -1054 3 1807 207 0 0 0 chr1 160239504 160239527 -36955905 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 3 1807 472 249 41 91 chr1 160239541 160239762 -36955670 + L1MC4 LINE L1 7086 7295 -747 3 1807 204 207 121 0 chr1 160241038 160241096 -36954336 - MER91C DNA Tip100 -20 120 56 3 1807 228 350 46 53 chr1 160241768 160241919 -36953513 - MIR SINE MIR -25 237 88 3 1807 668 71 36 0 chr1 160242446 160242558 -36952874 + (TC)n Simple_repeat Simple_repeat 2 117 0 3 1807 627 192 8 23 chr1 160242572 160242700 -36952732 - B1_Mus2 SINE Alu -13 134 9 3 1807 959 291 108 33 chr1 160243848 160244341 -36951091 - MLT1F LTR MaLR -15 545 1 3 1807 343 295 8 8 chr1 160244767 160244900 -36950532 + L1ME4a LINE L1 5716 5848 -276 3 1807 423 0 0 0 chr1 160245806 160245853 -36949579 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1807 244 248 164 37 chr1 160246171 160246305 -36949127 + MLT1E1A LTR MaLR 14 164 -396 3 1807 754 332 73 30 chr1 160246340 160246709 -36948723 + MLT1E1A LTR MaLR 287 671 -9 3 1807 282 313 185 18 chr1 160247852 160248181 -36947251 - L2a LINE L2 -104 3322 2939 3 1807 365 358 50 16 chr1 160248254 160248512 -36946920 - L2a LINE L2 -600 2819 2553 3 1807 539 254 0 17 chr1 160249392 160249448 -36945984 + polypyrimidine Low_complexity Low_complexity 122 176 0 3 1807 1152 119 0 0 chr1 160249448 160249625 -36945807 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 3 1807 539 254 0 17 chr1 160249625 160249744 -36945688 + polypyrimidine Low_complexity Low_complexity 4 121 0 3 1807 509 306 98 58 chr1 160251792 160251999 -36943433 - MLT1A LTR MaLR 0 374 166 3 1807 323 23 23 0 chr1 160251999 160252043 -36943389 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 3 1807 509 306 98 58 chr1 160252043 160252130 -36943302 - MLT1A LTR MaLR -209 165 68 3 1807 189 318 153 15 chr1 160252368 160252499 -36942933 - MER5A DNA MER1_type -39 150 2 3 1807 513 32 0 0 chr1 160252875 160252938 -36942494 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1807 373 228 71 55 chr1 160253344 160253471 -36941961 - MIRc SINE MIR -18 250 115 3 1807 320 316 0 0 chr1 160253768 160253847 -36941585 - MIRb SINE MIR -137 131 53 3 1807 295 283 0 104 chr1 160254133 160254241 -36941191 - MARNA DNA Mariner -170 416 320 3 1807 1157 61 0 26 chr1 160254241 160254392 -36941040 + B1_Mm SINE Alu 1 147 0 3 1807 295 283 0 104 chr1 160254392 160254417 -36941015 - MARNA DNA Mariner -267 319 297 3 1807 215 304 65 94 chr1 160255569 160255707 -36939725 + MIR3 SINE MIR 30 163 -45 3 1807 3246 58 7 21 chr1 160259849 160260271 -36935161 + L1Md_F2 LINE L1 6165 6580 -2 3 1807 226 278 57 38 chr1 160260915 160260950 -36934482 + L2a LINE L2 3216 3251 -175 3 1807 369 0 0 0 chr1 160260950 160260991 -36934441 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1807 226 278 57 38 chr1 160260991 160261112 -36934320 + L2a LINE L2 3252 3374 -52 3 1807 195 265 58 14 chr1 160261307 160261376 -36934056 - MIRb SINE MIR -66 202 131 3 1807 501 17 0 0 chr1 160261495 160261553 -36933879 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1807 36126 36 1 0 chr1 160261650 160267715 -36927717 + L1Md_T LINE L1 1 5589 -297 3 1807 9137 7 0 0 chr1 160267715 160268711 -36926721 + L1Md_T LINE L1 5590 6585 0 3 1807 672 258 33 19 chr1 160269718 160269931 -36925501 + MIR SINE MIR 41 256 -6 3 1807 322 264 95 40 chr1 160270375 160270501 -36924931 + MER5A DNA MER1_type 57 189 0 3 1807 21 36 0 0 chr1 160271245 160271273 -36924159 + AT_rich Low_complexity Low_complexity 1 28 0 3 1807 2164 149 9 44 chr1 160272430 160272858 -36922574 - RMER4A LTR ERVK -4 462 50 3 1807 483 204 39 78 chr1 160274421 160274575 -36920857 + B1_Mur1 SINE Alu 2 149 0 3 1807 214 229 0 59 chr1 160274739 160274790 -36920642 + MIRm SINE MIR 215 262 -14 3 1807 21 0 0 0 chr1 160274918 160274939 -36920493 + AT_rich Low_complexity Low_complexity 1 21 0 3 1807 202 370 142 5 chr1 160275964 160276176 -36919256 - MIRc SINE MIR -8 260 20 3 1807 187 322 89 24 chr1 160276233 160276357 -36919075 + MIRb SINE MIR 95 226 -42 3 1807 252 87 21 42 chr1 160276605 160276653 -36918779 + U2 snRNA snRNA 1 47 -141 3 1807 555 43 0 0 chr1 160276809 160276879 -36918553 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1807 202 276 67 22 chr1 160277258 160277347 -36918085 + MIR SINE MIR 18 110 -152 3 1807 60 89 0 0 chr1 160277367 160277525 -36917907 + AT_rich Low_complexity Low_complexity 1 158 0 3 1807 980 186 0 67 chr1 160277527 160277735 -36917697 - B3A SINE B2 -2 196 3 3 1807 190 364 22 22 chr1 160278137 160278227 -36917205 - L2c LINE L2 -186 3201 3112 3 1807 249 275 98 86 chr1 160278287 160278625 -36916807 - L2c LINE L2 -412 3007 2666 3 1807 233 213 0 21 chr1 160278698 160278746 -36916686 + G-rich Low_complexity Low_complexity 3 49 0 3 1807 724 298 0 98 chr1 160278826 160279090 -36916342 - B4A SINE B4 -7 285 48 3 1807 326 326 96 0 chr1 160279136 160279232 -36916200 - B1F2 SINE Alu -1 148 40 3 1807 180 0 0 0 chr1 160279232 160279252 -36916180 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1807 326 326 96 0 chr1 160279252 160279290 -36916142 - B1F2 SINE Alu -110 39 2 3 1807 189 94 0 0 chr1 160280158 160280190 -36915242 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1807 349 262 108 16 chr1 160280497 160280683 -36914749 - Charlie5 DNA MER1_type -1 2623 2421 4 1807 983 249 5 5 chr1 160280709 160280923 -36914509 - ID_B1 SINE B4 -6 218 5 4 1807 207 0 0 0 chr1 160280936 160280959 -36914473 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1807 1221 36 0 0 chr1 160280959 160281099 -36914333 - B1_Mus1 SINE Alu -8 140 1 4 1807 396 0 0 0 chr1 160281873 160281917 -36913515 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1807 207 0 0 0 chr1 160284189 160284212 -36911220 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1807 585 0 0 0 chr1 160284869 160284934 -36910498 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1807 204 40 0 0 chr1 160285373 160285398 -36910034 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1807 21 0 0 0 chr1 160285891 160285912 -36909520 + GC_rich Low_complexity Low_complexity 1 21 0 4 1807 441 0 0 0 chr1 160286954 160287003 -36908429 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1807 297 0 0 0 chr1 160287003 160287035 -36908397 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1807 207 244 0 0 chr1 160287038 160287083 -36908349 + G-rich Low_complexity Low_complexity 1 45 0 4 1807 229 244 0 0 chr1 160287428 160287469 -36907963 + polypurine Low_complexity Low_complexity 4 44 0 4 1807 48 67 0 0 chr1 160289472 160289562 -36905870 + AT_rich Low_complexity Low_complexity 1 90 0 4 1807 255 189 0 0 chr1 160291891 160291944 -36903488 + GA-rich Low_complexity Low_complexity 2 54 0 4 1807 999 122 0 0 chr1 160291948 160292120 -36903312 + (GAA)n Simple_repeat Simple_repeat 1 172 0 4 1807 220 338 0 14 chr1 160292414 160292486 -36902946 + C-rich Low_complexity Low_complexity 1 71 0 4 1807 213 237 17 0 chr1 160292599 160292658 -36902774 + CT-rich Low_complexity Low_complexity 4 63 0 4 1807 405 0 0 0 chr1 160294018 160294063 -36901369 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1807 216 0 0 0 chr1 160294950 160294974 -36900458 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 4 1807 535 170 13 19 chr1 160295821 160295977 -36899455 + (TA)n Simple_repeat Simple_repeat 2 156 0 4 1807 185 111 0 53 chr1 160298275 160298313 -36897119 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 4 1807 1447 69 16 11 chr1 160298473 160298664 -36896768 - B2_Mm2 SINE B2 -2 193 2 4 1807 2674 275 101 58 chr1 160299408 160299858 -36895574 - L1MC3 LINE L1 -221 7564 7050 4 1807 189 0 0 0 chr1 160299858 160299879 -36895553 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 4 1807 2674 275 101 58 chr1 160299879 160300951 -36894481 - L1MC3 LINE L1 -736 7049 5977 4 1808 198 0 0 0 chr1 160301201 160301223 -36894209 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1808 387 0 0 0 chr1 160301345 160301388 -36894044 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1808 192 40 0 0 chr1 160301872 160301897 -36893535 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4 1808 310 266 25 0 chr1 160301909 160301988 -36893444 - PB1D10 SINE Alu -28 89 9 4 1808 374 208 35 3 chr1 160301988 160302002 -36893430 - ID_B1 SINE B4 -111 176 80 4 1808 337 282 25 25 chr1 160302076 160302196 -36893236 + MER3 DNA MER1_type 39 158 -51 4 1808 574 293 96 19 chr1 160302326 160302639 -36892793 - L1MC3 LINE L1 -402 5792 5456 4 1808 40 49 0 24 chr1 160302895 160302934 -36892498 + AT_rich Low_complexity Low_complexity 1 39 0 4 1808 1115 62 21 0 chr1 160302934 160303079 -36892353 - B1_Mus1 SINE Alu 0 148 1 4 1808 40 49 0 24 chr1 160303079 160303122 -36892310 + AT_rich Low_complexity Low_complexity 1 42 0 4 1808 292 341 68 28 chr1 160303497 160303544 -36891888 - L1MC3 LINE L1 -2219 3927 3880 4 1808 2061 132 0 60 chr1 160303544 160303891 -36891541 + ORR1A3 LTR MaLR 1 326 0 4 1808 309 341 68 27 chr1 160303891 160304180 -36891252 - L1MC3 LINE L1 -2267 3879 3578 4 1808 362 57 19 0 chr1 160305160 160305213 -36890219 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1808 884 142 141 6 chr1 160305234 160305397 -36890035 + B2_Mm2 SINE B2 2 186 -9 4 1808 180 0 0 0 chr1 160307343 160307363 -36888069 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4 1808 1211 63 0 0 chr1 160307363 160307521 -36887911 - B2_Mm1t SINE B2 -33 160 3 4 1808 232 143 20 39 chr1 160307723 160307774 -36887658 + B1F SINE Alu 97 146 -3 4 1808 1271 318 116 72 chr1 160307914 160308738 -36886694 + Charlie1a DNA MER1_type 1 909 -546 4 1808 1327 60 11 5 chr1 160308738 160308922 -36886510 + L1_Mus3 LINE L1 6454 6638 0 4 1808 1271 318 116 72 chr1 160308922 160309203 -36886229 + Charlie1a DNA MER1_type 910 1191 -264 4 1808 599 226 82 18 chr1 160309203 160309374 -36886058 - B3A SINE B2 -16 182 1 4 1808 1271 318 116 72 chr1 160309374 160309661 -36885771 + Charlie1a DNA MER1_type 1192 1455 0 4 1808 2285 93 45 0 chr1 160309886 160310198 -36885234 - ORR1A2 LTR MaLR 0 327 2 4 1808 312 91 0 0 chr1 160310198 160310242 -36885190 + (ACTG)n Simple_repeat Simple_repeat 1 44 0 4 1808 301 43 43 0 chr1 160311451 160311498 -36883934 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 4 1808 288 0 0 0 chr1 160311913 160311945 -36883487 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1808 387 0 0 0 chr1 160311945 160311987 -36883445 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1808 222 171 0 0 chr1 160312974 160313015 -36882417 + T-rich Low_complexity Low_complexity 1 41 0 4 1808 1192 62 0 0 chr1 160313045 160313189 -36882243 - B1_Mus1 SINE Alu 0 148 5 4 1808 405 139 0 27 chr1 160313227 160313301 -36882131 - B1F SINE Alu -76 73 2 4 1808 248 212 0 43 chr1 160313240 160313309 -36882123 - B4 SINE B4 -147 145 80 4 1808 28 0 0 0 chr1 160313314 160313342 -36882090 + AT_rich Low_complexity Low_complexity 1 28 0 4 1808 687 363 30 3 chr1 160313617 160313946 -36881486 + MER2 DNA MER2_type 7 344 -1 4 1808 26 0 0 0 chr1 160314297 160314323 -36881109 + AT_rich Low_complexity Low_complexity 1 26 0 4 1808 225 372 58 7 chr1 160314554 160314708 -36880724 - LTR79 LTR ERVL -19 508 347 4 1808 240 122 0 0 chr1 160315804 160315845 -36879587 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 4 1808 545 153 0 22 chr1 160315848 160315982 -36879450 + CT-rich Low_complexity Low_complexity 6 136 0 4 1808 663 156 0 23 chr1 160318665 160318796 -36876636 - Lx LINE L1 -3 6651 6524 4 1808 274 333 30 42 chr1 160319528 160319694 -36875738 - MER5A1 DNA MER1_type 0 166 3 4 1808 734 0 12 0 chr1 160320795 160320881 -36874551 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1808 4198 71 0 7 chr1 160321964 160322514 -36872918 + L1Md_F2 LINE L1 6037 6582 0 4 1808 1690 157 90 6 chr1 160322600 160322921 -36872511 + ORR1B1 LTR MaLR 47 394 0 4 1808 203 205 23 35 chr1 160323905 160323991 -36871441 + (TATG)n Simple_repeat Simple_repeat 2 86 0 4 1808 540 130 0 0 chr1 160324046 160324138 -36871294 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1808 348 148 0 0 chr1 160324147 160324208 -36871224 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1808 757 282 36 0 chr1 160324210 160324405 -36871027 - B4A SINE B4 -88 204 3 4 1808 512 249 5 90 chr1 160324891 160325103 -36870329 - L1M5 LINE L1 -385 5739 5546 4 1808 752 90 60 0 chr1 160326228 160326395 -36869037 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1808 24 0 0 0 chr1 160328076 160328100 -36867332 + AT_rich Low_complexity Low_complexity 1 24 0 4 1808 248 259 73 12 chr1 160328247 160328329 -36867103 + CR1_Mam LINE CR1 849 935 -1269 4 1808 292 299 25 19 chr1 160328689 160328846 -36866586 + CR1_Mam LINE CR1 1386 1543 -661 4 1808 373 353 73 70 chr1 160329228 160329487 -36865945 - LTR16D LTR ERVL 0 675 409 4 1808 769 265 51 23 chr1 160329968 160330184 -36865248 + ID_B1 SINE B4 1 222 -2 4 1808 1044 254 89 102 chr1 160332778 160333160 -36862272 - MTE2a LTR MaLR -2 377 1 4 1808 661 276 6 89 chr1 160333160 160333339 -36862093 + RSINE1 SINE B4 2 165 0 4 1808 821 312 20 40 chr1 160333516 160333813 -36861619 - B4 SINE B4 0 292 2 4 1808 431 295 0 67 chr1 160335543 160335663 -36859769 - PB1D10 SINE Alu 0 117 6 4 1808 315 0 0 0 chr1 160335768 160335803 -36859629 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1808 510 218 36 0 chr1 160336991 160337101 -36858331 - Tigger5 DNA MER2_type -2 2404 2291 4 1808 748 308 16 0 chr1 160337135 160337317 -36858115 - Tigger5 DNA MER2_type -2184 222 38 4 1808 1310 308 37 0 chr1 160337717 160338071 -36857361 + MTE2b LTR MaLR 1 367 -12 4 1808 369 0 0 0 chr1 160338165 160338206 -36857226 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 4 1808 259 338 16 135 chr1 160338865 160339050 -36856382 - L2c LINE L2 -182 3205 3043 4 1808 300 53 0 0 chr1 160339750 160339788 -36855644 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 4 1808 209 361 57 8 chr1 160340280 160340403 -36855029 + L2a LINE L2 3279 3407 -19 4 1808 336 218 0 108 chr1 160341644 160341829 -36853603 + (TCTCTG)n Simple_repeat Simple_repeat 3 167 0 4 1808 351 0 0 0 chr1 160342106 160342145 -36853287 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1808 468 0 0 0 chr1 160342145 160342196 -36853236 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1808 298 280 72 43 chr1 160342214 160342383 -36853049 + L1MD1 LINE L1 6096 6354 -5 4 1808 183 80 0 0 chr1 160342394 160342419 -36853013 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1808 443 351 40 44 chr1 160342459 160342709 -36852723 - MIR SINE MIR -13 249 1 4 1808 699 325 16 5 chr1 160345282 160345362 -36850070 + ID SINE ID 2 83 -141 4 1808 253 281 23 123 chr1 160345362 160345492 -36849940 + PB1D10 SINE Alu 1 117 0 4 1808 277 86 17 17 chr1 160345715 160345774 -36849658 + (TTTTTG)n Simple_repeat Simple_repeat 3 61 0 4 1808 212 342 182 14 chr1 160345873 160346021 -36849411 + MIRb SINE MIR 30 202 -66 4 1808 291 333 10 10 chr1 160346176 160346279 -36849153 + L5 LINE RTE 1683 1785 -480 4 1808 406 315 36 12 chr1 160346379 160346546 -36848886 + MIRb SINE MIR 27 197 -71 4 1808 302 217 75 146 chr1 160346731 160346776 -36848656 + L5 LINE RTE 2024 2058 -207 4 1808 2052 146 9 18 chr1 160346776 160347105 -36848327 + ORR1A3 LTR MaLR 1 326 0 4 1808 302 217 75 146 chr1 160347105 160347313 -36848119 + L5 LINE RTE 2059 2259 -6 4 1808 413 36 0 18 chr1 160347330 160347386 -36848046 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1808 21 57 0 0 chr1 160347464 160347499 -36847933 + AT_rich Low_complexity Low_complexity 1 35 0 4 1808 438 20 0 0 chr1 160347967 160348018 -36847414 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1808 307 284 11 0 chr1 160348315 160348410 -36847022 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1808 225 344 129 92 chr1 160348731 160349048 -36846384 - ORR1D2 LTR MaLR 0 370 42 5 1808 607 261 119 28 chr1 160349190 160349615 -36845817 + L1MB3 LINE L1 5708 6174 0 5 1808 392 286 31 0 chr1 160350564 160350662 -36844770 + B1F SINE Alu 41 141 -8 5 1808 241 354 38 0 chr1 160350671 160350750 -36844682 + ID4_ SINE ID 2 83 0 5 1808 238 213 92 62 chr1 160351061 160351126 -36844306 - LTR33 LTR ERVL -148 367 301 5 1808 438 211 96 0 chr1 160351593 160351697 -36843735 - MER5A1 DNA MER1_type -52 114 1 5 1808 678 337 70 22 chr1 160352575 160352845 -36842587 + B4A SINE B4 4 286 -6 5 1808 365 58 0 19 chr1 160352862 160352915 -36842517 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1808 240 299 65 94 chr1 160353725 160353895 -36841537 - MIRb SINE MIR -17 251 87 5 1808 360 0 0 0 chr1 160353900 160353940 -36841492 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1808 775 271 55 32 chr1 160354680 160354897 -36840535 + ID_B1 SINE B4 2 223 -1 5 1808 358 322 115 14 chr1 160355259 160355467 -36839965 + MIRb SINE MIR 1 229 -39 5 1808 1034 232 0 44 chr1 160356151 160356376 -36839056 - B3 SINE B2 -1 215 1 5 1808 722 239 19 6 chr1 160356835 160356991 -36838441 + B3 SINE B2 30 187 -29 5 1808 509 80 13 0 chr1 160357023 160357098 -36838334 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1808 198 324 56 0 chr1 160359451 160359522 -36835910 + MIRc SINE MIR 6 80 -188 5 1808 859 288 144 61 chr1 160359535 160359579 -36835853 - MT2B LTR ERVL 0 601 558 5 1808 288 0 0 0 chr1 160359579 160359611 -36835821 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1808 859 288 144 61 chr1 160359611 160359858 -36835574 - MT2B LTR ERVL -44 557 315 5 1808 375 23 0 0 chr1 160359858 160359902 -36835530 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1808 859 288 144 61 chr1 160359902 160359991 -36835441 - MT2B LTR ERVL -287 314 204 5 1808 2868 100 72 34 chr1 160359991 160360435 -36834997 - RMER6B LTR ERVK 0 461 1 5 1808 859 288 144 61 chr1 160360435 160360607 -36834825 - MT2B LTR ERVL -398 203 3 5 1808 1107 324 113 36 chr1 160362222 160362840 -36832592 - MER21B LTR ERV1 -61 802 137 5 1808 312 70 0 0 chr1 160362904 160362947 -36832485 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 1808 576 263 116 100 chr1 160363381 160363571 -36831861 - MLT1A0 LTR MaLR 0 365 173 5 1808 2256 138 92 19 chr1 160363576 160364045 -36831387 - RMER4B LTR ERVK -11 455 1 5 1808 312 274 44 159 chr1 160364346 160364572 -36830860 - L1M3 LINE L1 -1412 4728 4529 5 1808 616 224 103 12 chr1 160364607 160364880 -36830552 + L1M3 LINE L1 4722 5032 -1111 5 1808 248 266 78 31 chr1 160364947 160365075 -36830357 + L1M3 LINE L1 5145 5278 -865 5 1808 396 0 0 0 chr1 160365092 160365136 -36830296 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1808 608 322 39 6 chr1 160365164 160365342 -36830090 + B4A SINE B4 106 289 -3 5 1808 22 0 0 0 chr1 160365513 160365535 -36829897 + AT_rich Low_complexity Low_complexity 1 22 0 5 1808 315 269 13 13 chr1 160365562 160365641 -36829791 - RSINE1 SINE B4 -29 136 58 5 1808 597 253 109 88 chr1 160365777 160366163 -36829269 + L1MB1 LINE L1 5762 6155 -13 5 1808 220 91 22 22 chr1 160366320 160366365 -36829067 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 5 1808 324 392 102 5 chr1 160366561 160366748 -36828684 + MIRb SINE MIR 4 208 -60 5 1808 444 37 0 0 chr1 160366986 160367040 -36828392 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1808 2118 114 6 6 chr1 160367666 160367985 -36827447 - ORR1A2 LTR MaLR -8 319 1 5 1808 227 353 65 10 chr1 160368051 160368166 -36827266 - L2a LINE L2 -6 3420 3251 5 1808 204 216 98 0 chr1 160368169 160368220 -36827212 + L3 LINE CR1 3522 3577 -912 5 1808 1404 230 23 41 chr1 160368234 160368628 -36826804 + L1MB8 LINE L1 4744 5130 -1016 5 1808 369 341 0 0 chr1 160368621 160368744 -36826688 - Lx7 LINE L1 -376 7320 7198 5 1808 909 278 122 54 chr1 160368821 160369680 -36825752 + L1MB8 LINE L1 5103 6023 -155 5 1808 343 364 145 43 chr1 160369849 160370248 -36825184 + L3 LINE CR1 3584 4023 -466 5 1808 198 147 0 0 chr1 160370577 160370611 -36824821 + L3 LINE CR1 4145 4178 -311 5 1808 234 279 16 16 chr1 160371224 160371286 -36824146 + PB1D10 SINE Alu 55 116 -1 5 1808 649 288 109 0 chr1 160371622 160371806 -36823626 + ID_B1 SINE B4 1 204 -20 5 1808 250 369 92 51 chr1 160372120 160372531 -36822901 - AmnSINE1 SINE SINE -2 573 146 5 1808 1202 237 109 30 chr1 160372979 160373310 -36822122 - MTEa LTR MaLR -14 365 9 5 1808 277 303 11 0 chr1 160373975 160374064 -36821368 - L1M5 LINE L1 -244 5880 5791 5 1808 680 89 10 0 chr1 160374361 160374462 -36820970 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 1808 215 200 56 14 chr1 160374608 160374679 -36820753 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 5 1808 432 0 0 0 chr1 160374707 160374755 -36820677 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1808 247 254 73 0 chr1 160374805 160374860 -36820572 + PB1 SINE Alu 9 67 -60 5 1808 387 227 0 0 chr1 160374873 160375001 -36820431 + GA-rich Low_complexity Low_complexity 3 130 0 5 1808 262 231 125 36 chr1 160375214 160375326 -36820106 - MamGypLTR2c LTR Gypsy -475 593 472 5 1808 198 324 29 14 chr1 160375333 160375402 -36820030 - MIRb SINE MIR -154 114 45 5 1808 188 286 43 0 chr1 160378524 160378594 -36816838 - MIR3 SINE MIR -28 180 108 5 1808 225 0 0 0 chr1 160379559 160379584 -36815848 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 5 1808 447 19 0 0 chr1 160379584 160379635 -36815797 + (TGAG)n Simple_repeat Simple_repeat 4 55 0 5 1808 424 340 26 20 chr1 160379949 160380144 -36815288 - MIRb SINE MIR -71 197 2 5 1808 28 29 0 0 chr1 160381313 160381348 -36814084 + AT_rich Low_complexity Low_complexity 1 35 0 5 1808 435 38 0 0 chr1 160381860 160381913 -36813519 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1808 181 312 122 52 chr1 160382140 160382255 -36813177 - MIRc SINE MIR -110 158 36 5 1808 469 77 0 0 chr1 160383680 160383758 -36811674 - L1Md_F2 LINE L1 -51 6531 6454 5 1808 244 47 0 0 chr1 160383759 160383802 -36811630 + L1Md_F2 LINE L1 6540 6582 0 5 1808 646 266 74 24 chr1 160383811 160384108 -36811324 - MLT1M LTR MaLR -204 468 157 5 1808 1396 267 46 16 chr1 160386093 160386459 -36808973 - MTEa LTR MaLR -2 377 1 5 1808 229 341 71 68 chr1 160386513 160386865 -36808567 + CR1_Mam LINE CR1 1527 1879 -325 5 1808 21 0 0 0 chr1 160386900 160386921 -36808511 + AT_rich Low_complexity Low_complexity 1 21 0 5 1808 333 330 0 0 chr1 160388464 160388555 -36806877 - RSINE1 SINE B4 -38 127 37 5 1808 5117 36 11 0 chr1 160388562 160389177 -36806255 + L1Md_F2 LINE L1 5707 6300 -282 5 1808 543 31 0 0 chr1 160389811 160389876 -36805556 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1808 537 58 0 0 chr1 160389876 160389944 -36805488 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1808 315 122 0 0 chr1 160391861 160391910 -36803522 + (CTTAT)n Simple_repeat Simple_repeat 1 49 0 5 1808 791 197 7 7 chr1 160391910 160392058 -36803374 - B1_Mur1 SINE Alu 0 149 2 5 1808 2400 148 117 14 chr1 160392944 160393452 -36801980 - RMER4B LTR ERVK -24 561 1 5 1808 198 0 0 0 chr1 160396482 160396504 -36798928 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 1808 390 308 83 6 chr1 160396505 160396662 -36798770 - B4A SINE B4 -116 176 8 5 1808 398 288 19 44 chr1 160399412 160399572 -36795860 + L1MB7 LINE L1 6009 6164 -20 5 1808 1357 157 0 18 chr1 160400344 160400571 -36794861 - URR1A DNA MER1_type -3 223 1 5 1808 225 293 0 0 chr1 160401194 160401252 -36794180 + L2b LINE L2 3309 3366 -9 5 1808 312 252 73 27 chr1 160403025 160403135 -36792297 - ORR1E LTR MaLR -238 121 7 5 1808 7754 37 10 11 chr1 160403402 160404333 -36791099 - L1Md_F2 LINE L1 0 6582 5653 5 1808 225 0 0 0 chr1 160407099 160407124 -36788308 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1808 387 0 0 0 chr1 160407211 160407254 -36788178 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1808 202 289 178 28 chr1 160408496 160408603 -36786829 + MIR SINE MIR 31 153 -55 5 1808 608 13 26 0 chr1 160408693 160408769 -36786663 + (CAAAA)n Simple_repeat Simple_repeat 5 82 0 5 1808 318 87 0 0 chr1 160409253 160409299 -36786133 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1808 25 65 0 0 chr1 160409319 160409365 -36786067 + AT_rich Low_complexity Low_complexity 1 46 0 5 1808 361 243 14 0 chr1 160409439 160409513 -36785919 + B4A SINE B4 11 85 -207 5 1808 296 51 50 17 chr1 160409528 160409588 -36785844 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1808 301 58 0 37 chr1 160409995 160410049 -36785383 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 5 1808 351 0 0 0 chr1 160410081 160410120 -36785312 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1808 587 227 79 6 chr1 160411369 160411533 -36783899 + B3 SINE B2 40 215 -1 5 1808 461 315 67 31 chr1 160412084 160412307 -36783125 + MIRb SINE MIR 30 260 -8 5 1808 405 277 19 102 chr1 160413057 160413262 -36782170 - MER58A DNA MER1_type -26 198 11 5 1808 470 112 169 0 chr1 160416684 160416773 -36778659 + Lx3B LINE L1 6050 6153 -820 5 1808 510 17 0 0 chr1 160419254 160419313 -36776119 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1808 23 0 0 0 chr1 160419339 160419362 -36776070 + GC_rich Low_complexity Low_complexity 1 23 0 5 1808 200 31 0 59 chr1 160419376 160419410 -36776022 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 5 1808 240 111 0 0 chr1 160419412 160419448 -36775984 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1808 447 19 0 0 chr1 160420188 160420240 -36775192 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1808 888 292 91 16 chr1 160420900 160421288 -36774144 + MTD LTR MaLR 8 419 0 5 1808 401 154 11 0 chr1 160421648 160421739 -36773693 + CT-rich Low_complexity Low_complexity 1 92 0 5 1808 460 293 6 198 chr1 160421757 160422115 -36773317 - B4 SINE B4 0 292 4 5 1808 184 256 0 0 chr1 160422619 160422658 -36772774 + MIRm SINE MIR 224 262 -14 6 1808 1158 266 121 9 chr1 160425520 160425858 -36769574 - MTEb LTR MaLR -3 376 1 6 1808 705 106 0 0 chr1 160425940 160426044 -36769388 + (TCCA)n Simple_repeat Simple_repeat 3 106 0 6 1808 198 276 13 26 chr1 160426753 160426831 -36768601 + L2a LINE L2 3273 3349 -77 6 1808 245 323 0 0 chr1 160427013 160427078 -36768354 + CT-rich Low_complexity Low_complexity 4 68 0 6 1808 231 345 8 98 chr1 160427078 160427210 -36768222 - L2c LINE L2 -5 3382 3263 6 1808 593 248 116 62 chr1 160429543 160429801 -36765631 + B4A SINE B4 5 276 -16 6 1808 197 336 95 56 chr1 160429842 160429968 -36765464 + MIRb SINE MIR 25 155 -113 6 1808 222 377 31 25 chr1 160430188 160430351 -36765081 - L3b LINE CR1 -85 397 234 6 1808 200 271 0 0 chr1 160430800 160430848 -36764584 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1809 827 230 162 43 chr1 160432706 160432983 -36762449 + Lx8 LINE L1 7164 7473 0 6 1809 280 326 48 37 chr1 160434709 160434897 -36760535 + L1M5 LINE L1 5675 5864 -260 6 1809 534 260 70 44 chr1 160442153 160442451 -36752981 - MTEb LTR MaLR -9 370 50 6 1809 211 204 0 0 chr1 160444040 160444084 -36751348 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1809 250 347 14 82 chr1 160444242 160444449 -36750983 + MLT1D LTR MaLR 29 221 -284 6 1809 197 180 0 20 chr1 160446120 160446171 -36749261 + CT-rich Low_complexity Low_complexity 1 50 0 6 1809 900 242 18 18 chr1 160447554 160447773 -36747659 - ID_B1 SINE B4 -1 223 5 6 1809 333 0 0 0 chr1 160447998 160448035 -36747397 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1809 582 301 29 106 chr1 160448067 160448379 -36747053 - B4A SINE B4 0 292 5 6 1809 553 284 115 19 chr1 160448417 160448522 -36746910 + MTEa LTR MaLR 3 128 -251 6 1809 420 20 0 0 chr1 160448522 160448571 -36746861 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1809 553 284 115 19 chr1 160448571 160448673 -36746759 + MTEa LTR MaLR 129 229 -150 6 1809 207 0 0 0 chr1 160451625 160451648 -36743784 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1809 224 409 6 0 chr1 160451699 160451870 -36743562 + L3 LINE CR1 3939 4110 -379 6 1809 450 0 0 0 chr1 160453516 160453566 -36741866 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1809 444 86 0 0 chr1 160453566 160453636 -36741796 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1809 408 246 5 54 chr1 160453638 160453823 -36741609 + (TATG)n Simple_repeat Simple_repeat 3 178 0 6 1809 198 0 0 0 chr1 160453895 160453917 -36741515 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1809 1200 61 0 0 chr1 160454281 160454428 -36741004 - B1_Mus1 SINE Alu 0 148 2 6 1809 906 209 73 0 chr1 160455667 160455753 -36739679 - RLTR20D LTR ERVK -3 565 479 6 1809 414 0 0 0 chr1 160455753 160455799 -36739633 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1809 1709 183 40 12 chr1 160455799 160456202 -36739230 - RLTR20D LTR ERVK -90 478 1 6 1809 396 0 0 0 chr1 160456406 160456450 -36738982 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1809 753 326 46 4 chr1 160456487 160456724 -36738708 - B4A SINE B4 -2 290 44 6 1809 3055 64 15 0 chr1 160457001 160457394 -36738038 + L1_Mus1 LINE L1 6169 6567 0 6 1809 360 0 0 0 chr1 160458445 160458485 -36736947 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1809 1051 293 19 4 chr1 160458502 160458769 -36736663 - B4 SINE B4 -18 274 4 6 1809 236 320 51 0 chr1 160458953 160459031 -36736401 - MIR SINE MIR -64 144 63 6 1809 309 317 112 37 chr1 160460226 160460495 -36734937 + B4A SINE B4 1 289 -3 6 1809 471 145 0 0 chr1 160460806 160460889 -36734543 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 1809 396 55 0 0 chr1 160461045 160461100 -36734332 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1809 235 160 49 37 chr1 160461101 160461263 -36734169 + (CA)n Simple_repeat Simple_repeat 2 165 0 6 1809 1001 254 92 21 chr1 160461988 160462326 -36733106 - MTEa LTR MaLR 0 379 18 6 1809 363 179 12 71 chr1 160463137 160463221 -36732211 - ID4_ SINE ID -3 80 2 6 1809 215 297 68 0 chr1 160463593 160463711 -36731721 + L2a LINE L2 3300 3425 -1 6 1809 394 300 61 35 chr1 160464002 160464199 -36731233 - L3 LINE CR1 -100 4389 4188 6 1809 1200 61 0 0 chr1 160464383 160464530 -36730902 - B1_Mus1 SINE Alu 0 148 2 6 1809 567 78 0 0 chr1 160464661 160464738 -36730694 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1809 477 0 0 0 chr1 160464738 160464790 -36730642 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1809 769 301 0 20 chr1 160464792 160464989 -36730443 - B4A SINE B4 -4 288 96 6 1809 997 208 91 29 chr1 160465044 160465386 -36730046 - Lx9 LINE L1 0 7644 7282 6 1809 216 288 17 0 chr1 160465670 160465729 -36729703 - MIR SINE MIR -122 140 81 6 1809 494 293 86 6 chr1 160466546 160466721 -36728711 - MER2 DNA MER2_type -52 293 105 6 1809 693 106 0 0 chr1 160467621 160467725 -36727707 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1809 378 0 0 0 chr1 160467741 160467783 -36727649 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1809 329 321 80 29 chr1 160469264 160469402 -36726030 - MIR SINE MIR -6 256 112 6 1809 290 276 78 0 chr1 160469479 160469573 -36725859 + PB1D7 SINE Alu 1 102 -15 6 1809 248 321 87 98 chr1 160469620 160469803 -36725629 - Tigger5 DNA MER2_type -2159 247 67 6 1809 246 232 87 0 chr1 160470077 160470146 -36725286 - MLT1A0 LTR MaLR -22 343 269 6 1809 1290 163 4 35 chr1 160470262 160470491 -36724941 + URR1B DNA MER1_type 2 223 -2 6 1809 404 37 19 0 chr1 160470566 160470620 -36724812 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6 1809 962 174 0 0 chr1 160470636 160470785 -36724647 - B1_Mur4 SINE Alu 0 150 2 6 1809 1045 332 106 28 chr1 160470822 160471217 -36724215 - MLT-int LTR MaLR -10 1725 1307 6 1809 3168 71 2 8 chr1 160471217 160471615 -36723817 - MTA_Mm LTR MaLR 0 396 1 6 1809 1045 332 106 28 chr1 160471615 160471764 -36723668 - MLT-int LTR MaLR -429 1306 1138 6 1809 513 295 94 64 chr1 160472213 160472448 -36722984 - MLT-int LTR MaLR -1191 544 303 6 1809 323 309 76 76 chr1 160472959 160473302 -36722130 - MLT1A0 LTR MaLR -2 363 21 6 1809 280 262 12 12 chr1 160473489 160473574 -36721858 + CT-rich Low_complexity Low_complexity 2 86 0 6 1809 399 21 0 0 chr1 160473575 160473623 -36721809 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1809 309 270 62 18 chr1 160474406 160474519 -36720913 + PB1D7 SINE Alu 1 118 -2 6 1809 1242 258 146 22 chr1 160474561 160475006 -36720426 + Lx8 LINE L1 6972 7471 -2 6 1809 340 319 198 11 chr1 160475069 160475342 -36720090 - MLT1B LTR MaLR -63 327 4 6 1809 245 194 29 15 chr1 160475716 160475784 -36719648 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1809 241 161 32 16 chr1 160475792 160475855 -36719577 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 6 1809 252 0 0 0 chr1 160475882 160475910 -36719522 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1809 1159 198 14 5 chr1 160476151 160476374 -36719058 + URR1B DNA MER1_type 1 225 0 6 1809 305 234 189 0 chr1 160476470 160476581 -36718851 + MER119 DNA MER1_type 400 531 -52 6 1809 249 0 0 0 chr1 160477421 160477454 -36717978 - B2_Mm1t SINE B2 -159 34 2 6 1809 21 36 0 0 chr1 160479324 160479352 -36716080 + AT_rich Low_complexity Low_complexity 1 28 0 6 1809 590 307 67 14 chr1 160480628 160480836 -36714596 + MER58A DNA MER1_type 5 223 -1 6 1809 180 318 47 12 chr1 160481087 160481173 -36714259 - MIR SINE MIR -22 240 152 6 1809 342 0 0 0 chr1 160481679 160481717 -36713715 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1809 355 309 77 34 chr1 160482780 160482988 -36712444 - LTR16A LTR ERVL -96 355 139 6 1809 269 150 0 0 chr1 160483552 160483592 -36711840 + B4A SINE B4 85 124 -168 6 1809 850 261 10 5 chr1 160483751 160483944 -36711488 + RMER30 DNA MER1_type 8 201 -1 6 1809 540 0 0 0 chr1 160484698 160484758 -36710674 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1809 514 294 33 16 chr1 160485925 160486108 -36709324 + MER5A DNA MER1_type 4 189 0 6 1809 8361 41 1 2 chr1 160486420 160487658 -36707774 - L1Md_F2 LINE L1 -2 6580 5345 6 1809 306 0 0 0 chr1 160487762 160487796 -36707636 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1809 421 290 84 134 chr1 160488597 160488955 -36706477 - MLT1C LTR MaLR -12 378 39 6 1809 258 339 50 33 chr1 160491070 160491250 -36704182 + MIRb SINE MIR 34 216 -52 6 1809 201 287 129 23 chr1 160491328 160491460 -36703972 + L2b LINE L2 3224 3369 -6 6 1809 1802 151 38 46 chr1 160492699 160493068 -36702364 + ORR1C1 LTR MaLR 13 378 0 6 1809 280 297 56 61 chr1 160493840 160494037 -36701395 + MIRb SINE MIR 72 267 -1 6 1809 531 333 46 75 chr1 160494499 160494781 -36700651 + B4 SINE B4 1 274 -18 6 1809 420 20 0 0 chr1 160494811 160494860 -36700572 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1809 198 0 0 0 chr1 160494861 160494883 -36700549 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1809 624 326 97 46 chr1 160495399 160495923 -36699509 - L2 LINE L2 -1775 1644 1094 6 1809 2017 202 27 5 chr1 160496110 160496522 -36698910 - MTC LTR MaLR 0 421 1 6 1809 261 308 63 36 chr1 160496675 160496786 -36698646 - MIR SINE MIR -142 120 7 6 1809 25 0 0 0 chr1 160496942 160496967 -36698465 + AT_rich Low_complexity Low_complexity 1 25 0 6 1809 202 324 39 10 chr1 160497271 160497374 -36698058 - MIRb SINE MIR -119 149 44 6 1809 180 290 40 79 chr1 160499563 160499664 -36695768 + L2c LINE L2 3283 3379 -8 6 1809 267 93 23 0 chr1 160499957 160500000 -36695432 - URR1B DNA MER1_type 0 225 182 6 1809 907 170 91 0 chr1 160500000 160500165 -36695267 - URR1A DNA MER1_type -44 182 3 1 1809 430 290 49 43 chr1 160500165 160500184 -36695248 + CYRA11_Mm Unknown Y-chromosome 219 403 -214 2 1809 436 304 32 57 chr1 160500187 160500361 -36695071 - MIR SINE MIR -82 186 17 3 1809 205 152 0 0 chr1 160500554 160500587 -36694845 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1809 335 321 100 11 chr1 160501167 160501438 -36693994 - MER20B DNA MER1_type -2 781 487 5 1809 490 312 7 7 chr1 160501497 160501639 -36693793 + ID_B1 SINE B4 83 224 0 6 1809 497 345 79 51 chr1 160501689 160502043 -36693389 - MER20B DNA MER1_type -416 367 4 5 1809 202 364 84 17 chr1 160502505 160502588 -36692844 - MIRb SINE MIR -41 227 139 7 1809 246 32 0 0 chr1 160502588 160502619 -36692813 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1809 202 364 84 17 chr1 160502619 160502714 -36692718 - MIRb SINE MIR -130 138 39 7 1809 610 301 44 22 chr1 160503302 160503530 -36691902 + MIRb SINE MIR 29 261 -7 9 1809 193 314 14 41 chr1 160503878 160503951 -36691481 - L2b LINE L2 -2 3373 3303 1 1809 185 333 53 0 chr1 160505436 160505493 -36689939 + MER5A DNA MER1_type 70 129 -60 1 1809 324 0 0 0 chr1 160505912 160505948 -36689484 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1809 216 0 0 0 chr1 160505948 160505971 -36689461 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1809 450 0 0 0 chr1 160505971 160506020 -36689412 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1809 267 290 39 20 chr1 160506580 160506682 -36688750 + MIRb SINE MIR 93 196 -72 1 1809 1292 72 0 11 chr1 160506711 160506893 -36688539 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1809 468 35 0 0 chr1 160508095 160508153 -36687279 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1809 189 0 0 0 chr1 160508553 160508574 -36686858 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1809 2651 158 47 20 chr1 160510707 160511154 -36684278 - RMER6B LTR ERVK -2 459 1 1 1809 348 176 212 0 chr1 160511455 160511540 -36683892 + B1_Mur1 SINE Alu 47 149 0 2 1809 181 30 0 83 chr1 160511540 160511576 -36683856 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1809 40467 27 2 6 chr1 160512683 160518862 -36676570 - L1Md_T LINE L1 0 6582 438 2 1809 711 300 25 33 chr1 160520038 160520283 -36675149 - MLT1D LTR MaLR -9 496 254 2 1809 1326 122 32 0 chr1 160520323 160520511 -36674921 - B2_Mm2 SINE B2 0 195 2 2 1809 531 313 11 43 chr1 160520556 160520743 -36674689 - MLT1D LTR MaLR -308 197 17 2 1809 462 18 0 0 chr1 160520841 160520896 -36674536 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1809 314 341 0 0 chr1 160520927 160521015 -36674417 - B4A SINE B4 -37 255 168 2 1809 6803 148 19 1 chr1 160521015 160521238 -36674194 - L1_Mur2 LINE L1 -925 4952 4731 2 1809 198 0 0 0 chr1 160521238 160521260 -36674172 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1809 6803 148 19 1 chr1 160521260 160522144 -36673288 - L1_Mur2 LINE L1 -1147 4730 3826 2 1809 2920 152 95 8 chr1 160522136 160522639 -36672793 + Lx LINE L1 6104 6650 -4 2 1809 572 277 45 51 chr1 160522683 160522839 -36672593 - B4A SINE B4 -137 155 1 2 1809 483 18 0 0 chr1 160524491 160524547 -36670885 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1809 400 317 126 37 chr1 160524713 160524926 -36670506 + MIRb SINE MIR 1 224 -38 3 1809 840 92 0 0 chr1 160525890 160526009 -36669423 + (GA)n Simple_repeat Simple_repeat 1 119 0 3 1809 438 20 0 0 chr1 160526090 160526141 -36669291 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 1809 263 122 20 0 chr1 160526177 160526226 -36669206 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 3 1809 197 65 32 0 chr1 160526226 160526257 -36669175 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 3 1809 267 347 44 36 chr1 160527965 160528133 -36667299 - MIRc SINE MIR -84 184 22 3 1809 207 398 16 16 chr1 160529278 160529462 -36665970 - MIRb SINE MIR 0 268 85 3 1809 357 77 0 37 chr1 160530922 160530976 -36664456 - B1_Mur4 SINE Alu -1 149 98 3 1809 366 276 146 0 chr1 160531104 160531227 -36664205 + Charlie1a DNA MER1_type 1070 1210 -245 3 1809 302 282 98 0 chr1 160531242 160531405 -36664027 + Charlie1a DNA MER1_type 1268 1446 -9 3 1809 405 276 92 23 chr1 160533372 160533546 -36661886 + MIR SINE MIR 2 187 -75 4 1809 277 217 29 14 chr1 160533651 160533721 -36661711 - RMER30 DNA MER1_type -45 157 87 4 1809 503 148 20 0 chr1 160533722 160533823 -36661609 + CT-rich Low_complexity Low_complexity 3 105 0 4 1809 344 103 17 0 chr1 160534033 160534091 -36661341 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1809 372 59 0 0 chr1 160534091 160534142 -36661290 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1809 495 0 0 0 chr1 160534228 160534283 -36661149 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1809 333 102 0 0 chr1 160534283 160534341 -36661091 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1809 21 0 0 0 chr1 160534695 160534716 -36660716 + AT_rich Low_complexity Low_complexity 1 21 0 4 1809 198 0 0 0 chr1 160534716 160534738 -36660694 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 4 1809 327 243 0 0 chr1 160535296 160535370 -36660062 - MER103 DNA DNA -90 76 3 4 1809 513 316 37 28 chr1 160535505 160535720 -36659712 - MER89 LTR ERV1 -2 557 341 5 1809 305 312 11 0 chr1 160536002 160536095 -36659337 + CT-rich Low_complexity Low_complexity 4 97 0 5 1809 3237 151 66 11 chr1 160536462 160537026 -36658406 - RLTR17 LTR ERVK 0 692 98 5 1809 180 321 0 0 chr1 160538646 160538699 -36656733 + MIRm SINE MIR 87 139 -137 5 1809 281 312 138 58 chr1 160539004 160539227 -36656205 + MIRb SINE MIR 17 261 -1 5 1809 892 172 21 0 chr1 160540140 160540285 -36655147 + B1_Mus1 SINE Alu 1 148 0 5 1809 4475 43 0 10 chr1 160540323 160540839 -36654593 + L1Md_F3 LINE L1 6073 6583 -1 5 1809 829 215 11 26 chr1 160541264 160541470 -36653962 - MTEb LTR MaLR -82 277 103 5 1809 1581 236 59 23 chr1 160541481 160541871 -36653561 - MTD LTR MaLR -15 404 1 5 1809 408 302 9 0 chr1 160541871 160541977 -36653455 - MTEb LTR MaLR -272 107 1 5 1809 226 264 94 90 chr1 160541987 160542199 -36653233 - MER112 DNA MER1_type -37 224 12 5 1809 198 0 0 0 chr1 160545440 160545462 -36649970 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1809 216 0 0 0 chr1 160545462 160545485 -36649947 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1809 740 265 0 0 chr1 160545505 160545656 -36649776 - B3A SINE B2 -47 151 1 6 1809 568 259 69 94 chr1 160546029 160546349 -36649083 + L1MA6 LINE L1 5983 6294 -6 6 1809 375 260 167 29 chr1 160546530 160546704 -36648728 - MLT1D LTR MaLR 0 624 370 6 1809 265 326 134 32 chr1 160546789 160546976 -36648456 + L2c LINE L2 3100 3305 -82 6 1809 506 267 72 20 chr1 160547629 160547782 -36647650 + ID_B1 SINE B4 64 224 0 6 1809 198 297 0 72 chr1 160548945 160549014 -36646418 - L2b LINE L2 0 3375 3312 6 1809 294 339 78 11 chr1 160549251 160549430 -36646002 - MIRb SINE MIR -18 250 60 6 1809 759 316 20 80 chr1 160549442 160549741 -36645691 + B4 SINE B4 2 282 -10 6 1809 511 260 68 0 chr1 160550061 160550207 -36645225 - MER5A1 DNA MER1_type 0 166 11 7 1809 899 306 108 12 chr1 160550711 160551055 -36644377 - MTE2b LTR MaLR -2 377 1 7 1809 180 338 78 39 chr1 160551504 160551658 -36643774 - L2a LINE L2 -55 3371 3212 7 1809 554 224 143 23 chr1 160551797 160551957 -36643475 + B3A SINE B2 2 177 -18 7 1809 1226 294 39 19 chr1 160552080 160552444 -36642988 + MTE2b LTR MaLR 9 379 0 7 1809 330 368 28 50 chr1 160552946 160553126 -36642306 + MIR3 SINE MIR 30 205 -3 7 1809 188 200 19 57 chr1 160553311 160553364 -36642068 + MIRm SINE MIR 112 162 -114 7 1809 732 282 148 38 chr1 160553929 160554518 -36640914 - Lx8 LINE L1 -1505 6139 5436 7 1809 1225 68 11 6 chr1 160554672 160554849 -36640583 + (TTCTCC)n Simple_repeat Simple_repeat 1 178 0 7 1809 318 194 0 0 chr1 160554849 160554916 -36640516 + CT-rich Low_complexity Low_complexity 3 69 0 7 1809 212 247 19 102 chr1 160555334 160555442 -36639990 - B1_Mur4 SINE Alu -2 148 50 8 1809 1065 264 60 114 chr1 160555572 160555845 -36639587 - RLTR28B LTR ERVL -38 443 166 8 1809 1212 63 7 0 chr1 160555845 160555988 -36639444 + B1_Mm SINE Alu 3 146 -1 8 1809 1065 264 60 114 chr1 160555988 160556180 -36639252 - RLTR28B LTR ERVL -316 165 3 8 1809 500 268 142 0 chr1 160560468 160560651 -36634781 + MTD LTR MaLR 5 213 -208 8 1809 285 206 0 0 chr1 160560669 160560766 -36634666 + GA-rich Low_complexity Low_complexity 2 98 0 8 1809 529 250 104 24 chr1 160560779 160560991 -36634441 + MTD LTR MaLR 179 419 0 8 1809 233 109 0 21 chr1 160561848 160561895 -36633537 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1809 192 293 67 0 chr1 160562006 160562081 -36633351 + MIRc SINE MIR 77 156 -112 8 226 828 265 172 70 chr1 160563054 160563582 -36631850 + MER92B LTR ERV1 53 634 -2 8 1810 354 390 26 52 chr1 160564628 160564977 -36630455 + MER58B DNA MER1_type 2 341 0 8 1810 541 236 0 11 chr1 160566299 160566475 -36628957 + CT-rich Low_complexity Low_complexity 2 175 0 8 1810 477 259 99 45 chr1 160566567 160566769 -36628663 - B4A SINE B4 -66 226 14 9 1810 246 176 0 0 chr1 160567222 160567273 -36628159 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 9 1810 382 239 25 42 chr1 160568249 160568367 -36627065 - B1F SINE Alu -14 135 20 9 1810 215 318 45 34 chr1 160569026 160569114 -36626318 - L3 LINE CR1 -86 4403 4315 9 1810 213 405 0 17 chr1 160569398 160569516 -36625916 - L3 LINE CR1 -219 4270 4155 9 1810 27 29 0 0 chr1 160570331 160570365 -36625067 + AT_rich Low_complexity Low_complexity 1 34 0 9 1810 1154 61 0 7 chr1 160570983 160571131 -36624301 - B1_Mus2 SINE Alu 0 147 1 9 1810 216 0 0 0 chr1 160571132 160571156 -36624276 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1810 561 346 64 26 chr1 160571770 160572161 -36623271 + MLT1C LTR MaLR 58 463 -4 9 1810 186 43 0 0 chr1 160572667 160572690 -36622742 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1810 38767 31 0 0 chr1 160572717 160578930 -36616502 - L1Md_T LINE L1 0 6585 278 9 1810 288 340 0 30 chr1 160581353 160581453 -36613979 - ID_B1 SINE B4 -63 161 65 1 1810 342 0 0 0 chr1 160581740 160581778 -36613654 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1810 211 111 43 22 chr1 160583509 160583555 -36611877 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1810 939 9 0 0 chr1 160585338 160585446 -36609986 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1810 1713 14 0 0 chr1 160585667 160585878 -36609554 - MT2_Mm LTR ERVL 0 493 283 1 1810 525 30 0 0 chr1 160585870 160585936 -36609496 - MT2_Mm LTR ERVL -409 66 1 1 1810 254 266 0 15 chr1 160586541 160586606 -36608826 + MIRb SINE MIR 37 100 -168 1 1810 1161 43 7 0 chr1 160589455 160589596 -36605836 - B1_Mus2 SINE Alu -1 146 5 1 1810 198 103 0 0 chr1 160590154 160590183 -36605249 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 1810 250 244 45 164 chr1 160590433 160590634 -36604798 - MTEb LTR MaLR 0 379 203 1 1810 22 0 0 0 chr1 160590969 160590991 -36604441 + AT_rich Low_complexity Low_complexity 1 22 0 1 1810 354 241 59 68 chr1 160591331 160591553 -36603879 - L1MA5A LINE L1 -277 6020 5801 1 1810 258 305 125 37 chr1 160591665 160591801 -36603631 + L2b LINE L2 3258 3421 -5 1 1810 1930 155 0 81 chr1 160592242 160592627 -36602805 - ORR1B1 LTR MaLR 0 394 41 1 1810 240 294 29 0 chr1 160592705 160592773 -36602659 + CT-rich Low_complexity Low_complexity 5 74 0 1 1810 357 299 132 5 chr1 160593176 160593381 -36602051 - MIR SINE MIR -27 235 5 1 1810 333 0 0 0 chr1 160593711 160593748 -36601684 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 1810 416 248 134 8 chr1 160593748 160593872 -36601560 - ID_B1 SINE B4 -10 214 73 1 1810 459 0 0 0 chr1 160595708 160595759 -36599673 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1810 351 0 0 0 chr1 160599389 160599428 -36596004 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1810 281 311 27 54 chr1 160600898 160601010 -36594422 - MIRc SINE MIR -116 152 44 1 1810 227 103 0 25 chr1 160603452 160603492 -36591940 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 1810 597 64 0 0 chr1 160604260 160604338 -36591094 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 1 1810 373 297 39 77 chr1 160606488 160606696 -36588736 + MIR SINE MIR 19 218 -44 1 1810 242 261 15 30 chr1 160606794 160606861 -36588571 - MIR SINE MIR -61 147 82 1 1810 21 0 0 0 chr1 160608288 160608309 -36587123 + AT_rich Low_complexity Low_complexity 1 21 0 1 1810 284 299 70 41 chr1 160608553 160608724 -36586708 - L2 LINE L2 -498 2921 2746 1 1810 243 42 61 20 chr1 160609068 160609117 -36586315 + (TTTTTG)n Simple_repeat Simple_repeat 1 51 0 1 1810 492 72 0 0 chr1 160609588 160609657 -36585775 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1810 385 294 0 0 chr1 160609729 160609821 -36585611 + MER5A DNA MER1_type 1 92 -97 1 1810 287 322 38 54 chr1 160610589 160610773 -36584659 + L2a LINE L2 3246 3426 0 1 1810 324 338 27 20 chr1 160610782 160610930 -36584502 - MIRb SINE MIR -27 241 93 1 1810 630 0 0 0 chr1 160611365 160611435 -36583997 + (TTTCC)n Simple_repeat Simple_repeat 5 74 0 1 1810 263 388 69 46 chr1 160612976 160613279 -36582153 + LTR16E2 LTR ERVL 258 567 -1 1 1810 227 253 29 78 chr1 160613291 160613394 -36582038 - MIR3 SINE MIR -25 183 86 1 1810 270 321 25 22 chr1 160615077 160615241 -36580191 + GA-rich Low_complexity Low_complexity 1 164 0 1 1810 801 0 0 0 chr1 160615451 160615540 -36579892 + (TTC)n Simple_repeat Simple_repeat 3 91 0 1 1810 317 82 20 0 chr1 160615540 160615589 -36579843 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1810 447 19 0 0 chr1 160615590 160615642 -36579790 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1810 369 301 61 73 chr1 160615648 160615813 -36579619 - B4 SINE B4 -129 163 1 1 1810 306 0 0 0 chr1 160618447 160618481 -36576951 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1 1810 330 26 0 0 chr1 160619110 160619149 -36576283 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1810 208 241 108 48 chr1 160620365 160620448 -36574984 - MIR SINE MIR -81 181 94 1 1810 442 362 47 19 chr1 160622611 160622822 -36572610 + MLT1G LTR MaLR 20 236 -355 1 1810 894 271 45 0 chr1 160622835 160623034 -36572398 + B3 SINE B2 9 216 0 1 1810 21 0 0 0 chr1 160623034 160623055 -36572377 + AT_rich Low_complexity Low_complexity 1 21 0 1 1810 2638 251 60 41 chr1 160623196 160623948 -36571484 + RMER1C Other Other 577 1342 0 1 1810 1510 84 16 0 chr1 160624508 160624699 -36570733 - B2_Mm2 SINE B2 -1 194 1 1 1810 932 282 97 17 chr1 160624985 160625274 -36570158 + Lx8 LINE L1 6905 7216 -257 1 1810 226 315 32 53 chr1 160625284 160625378 -36570054 + RMER15 LTR ERVL 371 462 -113 1 1810 201 162 0 26 chr1 160625501 160625539 -36569893 + CT-rich Low_complexity Low_complexity 1 37 0 1 1810 493 365 60 44 chr1 160626326 160626578 -36568854 + LTR33A_ LTR ERVL 33 288 -243 1 1810 226 354 32 83 chr1 160627409 160627625 -36567807 - LTR33A LTR ERVL -43 477 273 1 1810 867 153 52 23 chr1 160627668 160627842 -36567590 + B2_Mm2 SINE B2 2 180 -15 1 1810 248 303 164 35 chr1 160627889 160628060 -36567372 - LTR50 LTR ERVL -517 278 86 1 1810 331 226 78 9 chr1 160628412 160628528 -36566904 - Lx9 LINE L1 -8 7636 7513 1 1810 342 0 0 0 chr1 160628536 160628574 -36566858 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1810 342 0 0 0 chr1 160631028 160631066 -36564366 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1810 414 0 0 0 chr1 160631075 160631121 -36564311 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 1810 1422 243 58 53 chr1 160632252 160632648 -36562784 + MTD LTR MaLR 1 398 -21 1 1810 215 204 0 0 chr1 160632919 160632963 -36562469 + C-rich Low_complexity Low_complexity 1 44 0 1 1810 277 277 9 82 chr1 160633765 160633818 -36561614 + L2c LINE L2 3266 3312 -75 1 1810 516 32 0 0 chr1 160633818 160633880 -36561552 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1810 277 277 9 82 chr1 160633880 160633936 -36561496 + L2c LINE L2 3313 3367 -20 1 1810 271 281 50 18 chr1 160634204 160634312 -36561120 + MIR SINE MIR 26 143 -125 1 1810 216 0 0 0 chr1 160634452 160634476 -36560956 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1810 2286 196 17 12 chr1 160634567 160634986 -36560446 + MTC LTR MaLR 1 421 0 1 1810 2578 184 37 12 chr1 160634986 160635503 -36559929 + MTC-int LTR MaLR 3 532 -726 1 1810 7954 43 2 7 chr1 160635562 160636525 -36558907 - L1Md_F2 LINE L1 -7 6575 5618 1 1810 3605 178 56 13 chr1 160636526 160636816 -36558616 + MTC-int LTR MaLR 529 831 -427 1 1810 405 0 0 0 chr1 160636816 160636861 -36558571 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1810 3605 178 56 13 chr1 160636861 160637270 -36558162 + MTC-int LTR MaLR 832 1257 -1 1 1810 2403 170 49 12 chr1 160637270 160637676 -36557756 + MTC LTR MaLR 1 421 0 1 1810 392 292 30 36 chr1 160637766 160637933 -36557499 - MER3 DNA MER1_type -8 201 36 1 1810 225 228 18 0 chr1 160639190 160639247 -36556185 + A-rich Low_complexity Low_complexity 2 59 0 1 1810 275 230 14 0 chr1 160639573 160639647 -36555785 + CT-rich Low_complexity Low_complexity 1 75 0 1 1810 768 249 111 5 chr1 160639698 160639896 -36555536 + B4 SINE B4 1 219 -73 1 1810 432 0 0 0 chr1 160639896 160639944 -36555488 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 1 1810 333 288 0 24 chr1 160639944 160640026 -36555406 + B4 SINE B4 209 288 -4 1 1810 355 19 36 36 chr1 160640093 160640149 -36555283 + (CAGAGA)n Simple_repeat Simple_repeat 6 61 0 1 1810 210 37 0 0 chr1 160640670 160640697 -36554735 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1810 342 0 0 0 chr1 160642787 160642825 -36552607 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1810 513 47 0 0 chr1 160644032 160644096 -36551336 + (GCTG)n Simple_repeat Simple_repeat 3 66 0 1 1810 38 39 0 0 chr1 160644529 160644581 -36550851 + AT_rich Low_complexity Low_complexity 1 52 0 1 1810 187 273 0 0 chr1 160646339 160646383 -36549049 + L2b LINE L2 3312 3355 -20 1 1810 189 0 0 0 chr1 160648020 160648041 -36547391 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1810 641 310 62 69 chr1 160648987 160649275 -36546157 - B4 SINE B4 0 292 7 1 1810 252 0 0 0 chr1 160650095 160650123 -36545309 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1810 304 313 17 9 chr1 160651772 160651888 -36543544 + L1MEd LINE L1 69 185 -5934 1 1810 233 369 0 0 chr1 160652325 160652417 -36543015 - ID4_ SINE ID -59 93 2 1 1810 254 360 0 0 chr1 160653008 160653094 -36542338 + MIRb SINE MIR 165 250 -18 1 1810 180 0 0 0 chr1 160653339 160653359 -36542073 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1810 231 286 20 20 chr1 160654919 160655019 -36540413 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1810 219 36 0 0 chr1 160655087 160655115 -36540317 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1810 813 249 20 17 chr1 160655558 160655777 -36539655 + B3A SINE B2 3 216 0 1 1810 216 358 31 10 chr1 160657496 160657592 -36537840 + MIRc SINE MIR 53 150 -118 1 1810 318 115 0 0 chr1 160658294 160658346 -36537086 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1810 285 29 0 0 chr1 160658351 160658385 -36537047 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1810 446 128 11 0 chr1 160658387 160658481 -36536951 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 1 1810 696 156 0 0 chr1 160658575 160658703 -36536729 + GA-rich Low_complexity Low_complexity 3 130 0 1 1810 729 303 27 97 chr1 160658747 160659047 -36536385 + B4A SINE B4 2 280 -12 1 1810 180 217 0 0 chr1 160659058 160659104 -36536328 + GA-rich Low_complexity Low_complexity 3 48 0 1 1810 290 353 73 7 chr1 160659417 160659554 -36535878 - MIR SINE MIR -75 187 42 1 1810 202 197 0 47 chr1 160659985 160660049 -36535383 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 1 1810 229 252 50 10 chr1 160660580 160660681 -36534751 + MLT1I-int LTR MaLR 1 107 -1302 1 1810 531 306 66 0 chr1 160661150 160661333 -36534099 - MER2 DNA MER2_type -148 197 3 1 1810 876 328 62 71 chr1 160661400 160662165 -36533267 + MLT1I-int LTR MaLR 500 1238 -171 1 1810 284 341 124 56 chr1 160662377 160662644 -36532788 + MLT1I LTR MaLR 102 386 -25 1 1810 212 171 0 0 chr1 160663094 160663135 -36532297 + A-rich Low_complexity Low_complexity 1 41 0 1 1810 201 393 9 0 chr1 160664429 160664541 -36530891 - MIRc SINE MIR -1 267 155 2 1810 1190 240 120 21 chr1 160665257 160665631 -36529801 + MTD LTR MaLR 7 417 -2 2 1810 451 333 103 3 chr1 160665651 160665943 -36529489 - L2 LINE L2 -597 2822 2502 2 1810 182 174 22 0 chr1 160666207 160666253 -36529179 + T-rich Low_complexity Low_complexity 4 50 0 2 1810 737 154 0 16 chr1 160667331 160667456 -36527976 + MTB LTR MaLR 63 185 -222 2 1810 1481 63 5 0 chr1 160667686 160667876 -36527556 + MTB LTR MaLR 210 400 0 2 1810 251 246 40 14 chr1 160667887 160667961 -36527471 + HAL1 LINE L1 143 218 -2289 2 1810 29 28 0 0 chr1 160668484 160668520 -36526912 + AT_rich Low_complexity Low_complexity 1 36 0 2 1810 1148 108 161 25 chr1 160669087 160669286 -36526146 - URR1A DNA MER1_type 0 226 1 2 1810 1089 160 209 0 chr1 160670813 160671000 -36524432 - URR1A DNA MER1_type 0 226 1 2 1810 225 0 0 0 chr1 160672604 160672629 -36522803 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1810 3624 66 23 5 chr1 160672773 160673215 -36522217 - L1_Mus1 LINE L1 -2 6565 6116 2 1810 3943 48 0 10 chr1 160673215 160673695 -36521737 + L1_Mus1 LINE L1 5658 6132 -435 2 1810 333 324 169 75 chr1 160675820 160676087 -36519345 - B4 SINE B4 0 292 1 2 1810 1078 174 153 0 chr1 160676333 160676529 -36518903 + URR1A DNA MER1_type 1 226 0 2 1810 316 338 84 0 chr1 160676632 160676774 -36518658 + HAL1-3A_ME LINE L1 2285 2438 -420 2 1810 641 169 37 5 chr1 160676774 160676988 -36518444 + GA-rich Low_complexity Low_complexity 1 220 0 2 1810 310 230 240 0 chr1 160677542 160677642 -36517790 - MER20 DNA MER1_type -10 209 86 2 1810 506 200 20 0 chr1 160677819 160677919 -36517513 - B1_Mur2 SINE Alu -5 144 43 2 1810 504 68 0 0 chr1 160677936 160678009 -36517423 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1810 446 295 85 17 chr1 160678119 160678295 -36517137 - MER5A DNA MER1_type -1 188 1 2 1810 387 182 0 0 chr1 160679512 160679589 -36515843 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 2 1810 308 311 9 70 chr1 160680200 160680314 -36515118 + PB1D7 SINE Alu 1 107 -13 2 1810 288 0 0 0 chr1 160680314 160680346 -36515086 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1810 275 297 111 25 chr1 160681004 160681182 -36514250 + RLTR19-int LTR ERVK 2711 2884 -3253 2 1810 524 205 112 25 chr1 160681955 160682115 -36513317 + RLTR19-int LTR ERVK 3600 3773 -2364 2 1810 243 0 0 0 chr1 160683126 160683153 -36512279 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 2 1810 311 275 22 0 chr1 160684446 160684537 -36510895 + CT-rich Low_complexity Low_complexity 4 96 0 2 1810 294 143 0 0 chr1 160684555 160684604 -36510828 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 2 1810 863 121 18 18 chr1 160684594 160684762 -36510670 + CT-rich Low_complexity Low_complexity 2 169 0 2 1810 183 279 15 62 chr1 160686094 160686159 -36509273 - L4 LINE RTE -472 1557 1496 2 1810 220 27 54 0 chr1 160686172 160686209 -36509223 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 2 1810 279 0 0 0 chr1 160686893 160686924 -36508508 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1810 319 155 52 0 chr1 160686955 160687013 -36508419 + 4.5SRNA scRNA scRNA 26 86 -8 2 1810 737 95 19 0 chr1 160686966 160687071 -36508361 + B1_Mus2 SINE Alu 41 147 0 2 1810 1109 123 0 6 chr1 160687088 160687268 -36508164 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 2 1810 1123 67 0 43 chr1 160687289 160687477 -36507955 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 2 1810 306 0 0 0 chr1 160687477 160687511 -36507921 + (GGAGA)n Simple_repeat Simple_repeat 1 34 0 2 1810 396 0 0 0 chr1 160687813 160687857 -36507575 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1810 236 193 0 50 chr1 160688526 160688586 -36506846 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2 1810 189 352 54 31 chr1 160689725 160689854 -36505578 - MIRb SINE MIR -71 197 66 2 1810 298 241 0 0 chr1 160689874 160689932 -36505500 + B3A SINE B2 2 59 -139 2 1810 1485 101 9 5 chr1 160690062 160690272 -36505160 + L1_Mus3 LINE L1 6427 6637 -1 2 1810 396 59 0 0 chr1 160690289 160690340 -36505092 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1810 441 328 184 24 chr1 160690365 160690778 -36504654 - L2a LINE L2 -1 3425 2947 2 1810 195 42 0 0 chr1 160692549 160692573 -36502859 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1810 1583 62 0 30 chr1 160693469 160693668 -36501764 + B2_Mm2 SINE B2 2 194 -1 2 1810 849 62 0 0 chr1 160693692 160693804 -36501628 + (GGGAA)n Simple_repeat Simple_repeat 5 116 0 2 1811 180 0 0 0 chr1 160694505 160694525 -36500907 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1811 22 0 0 0 chr1 160694694 160694716 -36500716 + AT_rich Low_complexity Low_complexity 1 22 0 2 1811 335 247 86 0 chr1 160695304 160695385 -36500047 + RSINE1 SINE B4 4 91 -74 2 1811 485 16 0 16 chr1 160695386 160695449 -36499983 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1811 354 23 0 0 chr1 160695449 160695491 -36499941 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1811 239 79 0 26 chr1 160696306 160696345 -36499087 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1811 664 43 22 0 chr1 160696353 160696445 -36498987 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 1811 919 267 47 125 chr1 160697960 160698367 -36497065 - MTEa LTR MaLR -4 375 1 2 1811 3532 28 8 2 chr1 160698654 160699048 -36496384 + MTA_Mm LTR MaLR 1 396 0 2 1811 444 321 120 39 chr1 160699223 160699456 -36495976 + MLT1A LTR MaLR 108 359 -15 2 1811 202 346 12 114 chr1 160700978 160701223 -36494209 + L2 LINE L2 2493 2712 -707 2 1811 183 256 0 25 chr1 160701371 160701411 -36494021 + L2 LINE L2 2877 2915 -504 2 1811 359 271 29 114 chr1 160702130 160702305 -36493127 + MER5A1 DNA MER1_type 1 160 -6 2 1811 326 307 11 0 chr1 160702366 160702454 -36492978 + L4 LINE RTE 188 276 -1753 2 1811 297 0 0 0 chr1 160703194 160703227 -36492205 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1811 913 241 9 27 chr1 160703307 160703529 -36491903 - ORR1C2 LTR MaLR 0 384 167 2 1811 1012 158 5 38 chr1 160703553 160703737 -36491695 - ORR1C2 LTR MaLR -190 194 17 2 1811 2173 222 97 20 chr1 160703858 160704397 -36491035 + Lx9 LINE L1 6884 7463 -181 2 1811 477 34 0 0 chr1 160704398 160704457 -36490975 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1811 227 370 43 55 chr1 160705097 160705260 -36490172 + MIR SINE MIR 15 175 -87 2 1811 351 0 0 0 chr1 160706095 160706134 -36489298 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1811 354 364 31 39 chr1 160706817 160707046 -36488386 - HAL1-2a_MD LINE L1 -451 2573 2347 2 1811 752 191 6 0 chr1 160707046 160707219 -36488213 + (ATGGTG)n Simple_repeat Simple_repeat 6 179 0 2 1811 498 196 114 3 chr1 160707290 160707419 -36488013 + Lx3C LINE L1 6847 6995 -5 2 1811 180 172 34 17 chr1 160707916 160707975 -36487457 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1811 21 36 0 0 chr1 160708013 160708041 -36487391 + AT_rich Low_complexity Low_complexity 1 28 0 2 1811 2577 95 6 0 chr1 160708239 160708564 -36486868 + ORR1A2 LTR MaLR 1 327 0 2 1811 564 29 0 0 chr1 160708675 160708745 -36486687 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1811 185 281 66 66 chr1 160709483 160709605 -36485827 - L2 LINE L2 -1044 2375 2254 2 1811 653 280 37 37 chr1 160709606 160709821 -36485611 + B3 SINE B2 2 216 0 2 1811 329 209 81 19 chr1 160709853 160709978 -36485454 + L1M3 LINE L1 4359 4482 -1664 2 1811 315 49 0 0 chr1 160709992 160710033 -36485399 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1811 208 206 16 16 chr1 160710241 160710305 -36485127 + T-rich Low_complexity Low_complexity 3 66 0 2 1811 541 239 0 9 chr1 160710307 160710421 -36485011 - ID_B1 SINE B4 -2 222 110 2 1811 381 287 36 18 chr1 160710331 160710441 -36484991 - B1_Mur2 SINE Alu -28 121 10 2 1811 558 227 0 26 chr1 160710638 160710751 -36484681 + PB1D10 SINE Alu 1 110 -7 2 1811 279 0 0 0 chr1 160710756 160710787 -36484645 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 2 1811 270 0 0 0 chr1 160711008 160711038 -36484394 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1811 2109 130 13 0 chr1 160712907 160713222 -36482210 + ORR1A2 LTR MaLR 1 319 -8 2 1811 276 416 20 7 chr1 160718162 160718312 -36477120 + MamRep38 DNA hAT 2 153 -142 2 1811 193 342 59 42 chr1 160718623 160718742 -36476690 + MIRb SINE MIR 17 137 -131 2 1811 997 219 114 74 chr1 160719342 160719667 -36475765 + RLTR14 LTR ERV1 1 338 -44 2 1811 523 76 21 21 chr1 160720820 160720914 -36474518 + (CAGAGA)n Simple_repeat Simple_repeat 1 94 0 2 1811 234 320 60 65 chr1 160722209 160722393 -36473039 - MER5A DNA MER1_type -4 185 3 2 1811 299 287 8 85 chr1 160722393 160722482 -36472950 - B1F1 SINE Alu -69 80 1 2 1811 225 157 19 19 chr1 160723571 160723623 -36471809 + (TTAA)n Simple_repeat Simple_repeat 4 55 0 2 1811 426 290 73 18 chr1 160723800 160723965 -36471467 + MIR3 SINE MIR 17 190 -18 2 1811 209 30 61 0 chr1 160726294 160726327 -36469105 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1811 636 81 11 0 chr1 160726327 160726414 -36469018 - B1_Mus2 SINE Alu -2 145 58 2 1811 1026 313 87 24 chr1 160728192 160728391 -36467041 + Lx8 LINE L1 6915 7113 -360 2 1811 486 0 0 0 chr1 160728391 160728445 -36466987 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1811 1026 313 87 24 chr1 160728445 160728739 -36466693 + Lx8 LINE L1 7114 7439 -34 2 1811 861 278 80 52 chr1 160729139 160729637 -36465795 + L1MC1 LINE L1 5593 6104 -229 2 1811 262 266 404 6 chr1 160729656 160729822 -36465610 + B4A SINE B4 2 233 -59 2 1811 276 208 27 14 chr1 160729878 160729951 -36465481 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1811 424 300 32 27 chr1 160729975 160730160 -36465272 + L1MC1 LINE L1 6117 6302 -31 2 1811 1321 161 9 0 chr1 160730975 160731199 -36464233 + URR1A DNA MER1_type 1 226 0 2 1811 433 382 85 50 chr1 160731282 160731563 -36463869 - B4A SINE B4 0 292 2 2 1811 239 348 42 17 chr1 160731817 160731937 -36463495 + MLT1E1A LTR MaLR 558 680 0 2 1811 252 0 0 0 chr1 160732040 160732068 -36463364 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1811 681 189 171 13 chr1 160732103 160732272 -36463160 + B3 SINE B2 1 193 -2 3 1811 1658 239 24 53 chr1 160732828 160733069 -36462363 - BGLII_B LTR ERVK 0 441 206 3 1811 2056 54 56 28 chr1 160733069 160733355 -36462077 - L1Md_F3 LINE L1 0 6584 6291 3 1811 1658 239 24 53 chr1 160733355 160733563 -36461869 - BGLII_B LTR ERVK -236 205 5 3 1811 435 38 0 0 chr1 160733717 160733770 -36461662 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1811 1512 234 19 22 chr1 160735118 160735489 -36459943 + ORR1D2 LTR MaLR 1 370 0 3 1811 226 282 27 40 chr1 160735682 160735756 -36459676 - LTR41 LTR ERVL -653 115 43 3 1811 3494 23 2 0 chr1 160735849 160736244 -36459188 + MTA_Mm LTR MaLR 1 396 0 3 1811 9217 33 4 1 chr1 160736244 160737339 -36458093 + MTA_Mm-int LTR MaLR 1 1098 0 3 1811 3494 23 2 0 chr1 160737339 160737734 -36457698 + MTA_Mm LTR MaLR 1 396 0 3 1811 198 91 0 0 chr1 160737991 160738024 -36457408 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1811 348 244 26 0 chr1 160738119 160738197 -36457235 + ID4 SINE ID 2 81 -2 3 1811 229 243 18 18 chr1 160738599 160738712 -36456720 + L1MD LINE L1 2257 2369 -3777 3 1811 180 152 0 0 chr1 160739550 160739583 -36455849 + CT-rich Low_complexity Low_complexity 2 34 0 3 1811 279 133 0 0 chr1 160739762 160739807 -36455625 + (GGGGA)n Simple_repeat Simple_repeat 1 45 0 3 1811 1329 73 0 0 chr1 160739807 160739985 -36455447 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 3 1811 706 297 47 5 chr1 160739993 160740186 -36455246 - ID_B1 SINE B4 -22 202 2 3 1811 8130 42 7 2 chr1 160740295 160741599 -36453833 - L1Md_A LINE L1 -1 6581 5205 3 1811 221 115 0 71 chr1 160741599 160741655 -36453777 + T-rich Low_complexity Low_complexity 4 55 0 3 1811 208 358 194 24 chr1 160742466 160742806 -36452626 - L2b LINE L2 -7 3368 2971 3 1811 428 359 96 84 chr1 160743120 160743612 -36451820 + MLT1F1 LTR MaLR 85 569 0 3 1811 312 307 56 28 chr1 160745297 160745441 -36449991 - B1F2 SINE Alu -1 148 1 3 1811 420 66 49 0 chr1 160745703 160745764 -36449668 + ORR1C2 LTR MaLR 7 70 -314 3 1811 1041 229 33 5 chr1 160745802 160746017 -36449415 + ORR1C2 LTR MaLR 162 382 -2 3 1811 727 169 43 91 chr1 160746306 160746502 -36448930 - Lx9 LINE L1 -1 7643 7459 3 1811 414 0 0 0 chr1 160746502 160746548 -36448884 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1811 727 169 43 91 chr1 160746548 160746605 -36448827 - Lx9 LINE L1 -186 7458 7402 3 1811 237 180 16 47 chr1 160747905 160747969 -36447463 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 3 1811 296 265 62 68 chr1 160750970 160751132 -36444300 + MER53 DNA hAT 2 162 -31 3 1811 375 23 0 0 chr1 160751139 160751183 -36444249 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1811 459 0 0 0 chr1 160751183 160751233 -36444199 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1811 198 0 0 0 chr1 160751724 160751746 -36443686 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1811 2036 246 60 98 chr1 160751934 160752417 -36443015 + Lx6 LINE L1 6778 7233 -227 3 1811 468 48 0 0 chr1 160752417 160752480 -36442952 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 3 1811 950 112 0 36 chr1 160752480 160752619 -36442813 - B1_Mus2 SINE Alu -12 135 2 3 1811 2036 246 60 98 chr1 160752619 160752806 -36442626 + Lx6 LINE L1 7234 7422 -38 3 1811 876 46 0 0 chr1 160752807 160752916 -36442516 + (GGAGA)n Simple_repeat Simple_repeat 2 110 0 3 1811 216 0 0 0 chr1 160752950 160752974 -36442458 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1811 1091 62 0 0 chr1 160753609 160753754 -36441678 - L1Md_F2 LINE L1 -527 6055 5911 3 1811 1323 93 82 10 chr1 160753769 160753976 -36441456 + L1Md_F2 LINE L1 6348 6569 -13 3 1811 351 0 0 0 chr1 160754632 160754671 -36440761 + (TTGG)n Simple_repeat Simple_repeat 4 42 0 3 1811 353 280 99 10 chr1 160754676 160754777 -36440655 - B1F SINE Alu -1 148 39 3 1811 231 282 103 6 chr1 160754786 160754961 -36440471 - L1M5 LINE L1 -3261 2885 2694 3 1811 228 320 40 7 chr1 160755246 160755397 -36440035 - L1M5 LINE L1 -3774 2372 2217 3 1811 985 229 94 33 chr1 160756807 160757082 -36438350 + B4A SINE B4 1 292 0 3 1811 226 226 0 36 chr1 160757084 160757139 -36438293 + (CATA)n Simple_repeat Simple_repeat 3 55 0 3 1811 458 360 133 40 chr1 160757161 160757485 -36437947 + MTEb LTR MaLR 9 362 -17 3 1811 185 366 88 37 chr1 160757855 160757991 -36437441 + MIRb SINE MIR 17 159 -109 3 1811 347 279 108 41 chr1 160758786 160758980 -36436452 + MIRc SINE MIR 47 253 -15 3 1811 252 0 0 0 chr1 160759067 160759095 -36436337 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1811 22 0 0 0 chr1 160759586 160759608 -36435824 + AT_rich Low_complexity Low_complexity 1 22 0 3 1811 182 328 78 23 chr1 160760566 160760694 -36434738 + L2 LINE L2 765 899 -2520 3 1811 291 277 86 35 chr1 160760785 160760901 -36434531 + Tigger6a DNA MER2_type 367 488 -595 3 1811 331 289 115 42 chr1 160760986 160761003 -36434429 + CYRA11_Mm Unknown Y-chromosome 160 209 -408 3 1811 775 163 0 14 chr1 160761003 160761146 -36434286 - URR1B DNA MER1_type -2 223 83 3 1811 331 289 115 42 chr1 160761146 160761203 -36434229 + CYRA11_Mm Unknown Y-chromosome 210 392 -225 3 1811 234 81 0 0 chr1 160761215 160761252 -36434180 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1811 570 310 98 67 chr1 160761254 160761703 -36433729 + Tigger6a DNA MER2_type 620 1082 -1 3 1811 183 323 0 0 chr1 160761713 160761812 -36433620 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1811 215 289 0 0 chr1 160761900 160761945 -36433487 + ID4 SINE ID 12 56 -27 3 1811 300 348 131 58 chr1 160762063 160762423 -36433009 + L1M5 LINE L1 4634 5019 -1127 3 1811 180 0 0 0 chr1 160762448 160762468 -36432964 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1811 235 280 28 75 chr1 160764496 160764609 -36430823 - MIRc SINE MIR -150 126 20 3 1811 243 0 0 0 chr1 160765361 160765388 -36430044 + (ATTTG)n Simple_repeat Simple_repeat 1 27 0 3 1811 367 253 95 0 chr1 160765404 160765499 -36429933 - PB1D10 SINE Alu -11 106 3 3 1811 619 288 190 6 chr1 160767111 160767422 -36428010 + L3 LINE CR1 3867 4234 -255 3 1811 201 350 10 10 chr1 160767478 160767576 -36427856 + MIRb SINE MIR 89 186 -82 3 1811 192 351 17 54 chr1 160768415 160768565 -36426867 + MIRm SINE MIR 23 177 -99 3 1811 2761 28 2 213 chr1 160769175 160769669 -36425763 + RLTR10 LTR ERVK 1 390 0 3 1811 292 51 0 0 chr1 160769680 160769719 -36425713 + RLTR10-int LTR ERVK 475 513 -1474 3 1811 7862 19 4 0 chr1 160769716 160770649 -36424783 + RLTR10-int LTR ERVK 1048 1984 -3 3 1811 2749 31 2 213 chr1 160770651 160771145 -36424287 + RLTR10 LTR ERVK 1 390 0 3 1811 291 28 0 0 chr1 160771214 160771250 -36424182 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1811 1370 264 90 3 chr1 160771253 160771828 -36423604 + L1MA6 LINE L1 5607 6231 -69 3 1811 729 231 85 5 chr1 160772905 160773105 -36422327 - B3 SINE B2 0 216 1 3 1811 638 267 124 64 chr1 160773340 160773744 -36421688 - Charlie5 DNA MER1_type 0 2624 2197 3 1811 239 280 156 23 chr1 160776540 160776668 -36418764 + MIRb SINE MIR 3 147 -121 3 1811 1172 100 0 0 chr1 160779363 160779523 -36415909 + B2_Mm2 SINE B2 13 172 -23 3 1811 926 157 14 0 chr1 160780270 160780410 -36415022 + B1_Mus2 SINE Alu 1 142 -5 3 1811 213 152 22 0 chr1 160780419 160780465 -36414967 + A-rich Low_complexity Low_complexity 4 50 0 3 1811 672 48 0 0 chr1 160782347 160782431 -36413001 + (TCC)n Simple_repeat Simple_repeat 3 86 0 3 1811 288 0 0 0 chr1 160782433 160782465 -36412967 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1811 1124 82 7 7 chr1 160782500 160782647 -36412785 - B1_Mm SINE Alu 0 147 1 3 1811 246 233 0 32 chr1 160782886 160782948 -36412484 - MIRc SINE MIR -121 147 88 3 1811 356 288 124 48 chr1 160783826 160784012 -36411420 + Lx8 LINE L1 7265 7464 -9 3 1811 545 42 14 0 chr1 160784376 160784448 -36410984 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 3 1811 1034 204 124 0 chr1 160785444 160785645 -36409787 - URR1A DNA MER1_type 0 226 1 3 1811 2651 33 0 16 chr1 160786564 160786868 -36408564 - L1_Mus1 LINE L1 -2 6565 6267 3 1811 716 344 24 17 chr1 160788092 160788382 -36407050 + B4A SINE B4 1 292 0 3 1811 1035 323 34 36 chr1 160788445 160788911 -36406521 + Lx9 LINE L1 7028 7492 -152 3 1811 4223 146 94 15 chr1 160789565 160790248 -36405184 + RMER19A LTR ERVK 1 737 0 3 1811 198 96 26 52 chr1 160791662 160791739 -36403693 + T-rich Low_complexity Low_complexity 2 76 0 3 1811 260 164 33 0 chr1 160791808 160791869 -36403563 + GA-rich Low_complexity Low_complexity 5 67 0 3 1811 2392 254 25 7 chr1 160791871 160792431 -36403001 + Lx6 LINE L1 6879 7448 -12 3 1811 1412 210 73 86 chr1 160793165 160793618 -36401814 - Lx9 LINE L1 -2 7642 7196 3 1811 281 297 24 48 chr1 160793897 160794021 -36401411 + Charlie2b DNA MER1_type 2661 2781 -1 3 1811 941 335 79 44 chr1 160795168 160795275 -36400157 - L1MD1 LINE L1 -210 7240 7131 3 1811 745 187 50 14 chr1 160795275 160795416 -36400016 + B1_Mur1 SINE Alu 3 148 -1 3 1811 941 335 79 44 chr1 160795416 160795437 -36399995 - L1MD1 LINE L1 -320 7130 7119 3 1811 351 0 0 0 chr1 160795437 160795476 -36399956 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1811 426 20 0 0 chr1 160795476 160795526 -36399906 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1811 973 310 84 32 chr1 160795526 160796597 -36398835 - L1MD1 LINE L1 -332 7118 5992 3 1811 651 233 8 0 chr1 160796630 160796750 -36398682 - B1_Mur1 SINE Alu -27 122 2 3 1811 892 294 138 25 chr1 160796871 160797737 -36397695 - L1MD1 LINE L1 -2944 4293 3325 3 1811 309 26 0 0 chr1 160797756 160797794 -36397638 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1811 513 274 86 35 chr1 160797827 160798001 -36397431 - B3A SINE B2 -15 183 1 3 1811 405 0 0 0 chr1 160798201 160798246 -36397186 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1811 477 324 99 36 chr1 160798304 160798412 -36397020 - L1MD1 LINE L1 -4548 2785 2661 3 1811 357 24 0 0 chr1 160798412 160798454 -36396978 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1811 477 324 99 36 chr1 160798454 160798842 -36396590 - L1MD1 LINE L1 -4673 2660 2259 3 1811 294 244 66 11 chr1 160799232 160799323 -36396109 - L1MD1 LINE L1 -5491 744 649 3 1811 228 368 31 21 chr1 160800630 160800727 -36394705 - PB1D10 SINE Alu -13 104 7 3 1811 373 298 32 16 chr1 160801178 160801301 -36394131 - B1F1 SINE Alu -22 127 3 3 1811 3549 89 13 13 chr1 160801971 160802447 -36392985 - Lx3_Mus LINE L1 0 7009 6534 3 1811 3634 98 2 6 chr1 160802443 160802925 -36392507 - L1_Mus4 LINE L1 -16 6620 6141 3 1811 2049 211 12 38 chr1 160803333 160803757 -36391675 + MTC LTR MaLR 1 413 -8 3 1811 3011 254 90 44 chr1 160803825 160804787 -36390645 + Lx9 LINE L1 6466 7472 -172 3 1811 4279 204 84 80 chr1 160806420 160807610 -36387822 + Lx9 LINE L1 6442 7636 -8 4 1811 322 341 0 54 chr1 160807779 160807909 -36387523 + ID_B1 SINE B4 66 188 -36 4 1811 387 255 113 0 chr1 160807812 160807918 -36387514 + B1F2 SINE Alu 11 128 -21 4 1811 1194 276 93 3 chr1 160809115 160809438 -36385994 + ORR1E LTR MaLR 6 357 -2 4 1811 36305 34 0 0 chr1 160809701 160815401 -36380031 + L1Md_T LINE L1 1 5589 -297 4 1811 9583 6 0 0 chr1 160815401 160816397 -36379035 + L1Md_T LINE L1 5590 6585 0 4 1811 225 0 0 0 chr1 160816413 160816438 -36378994 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1811 580 250 138 19 chr1 160816922 160817081 -36378351 + B4 SINE B4 2 179 -113 4 1811 412 277 59 0 chr1 160817091 160817210 -36378222 + Lx8 LINE L1 6236 6361 -1112 4 1811 920 240 38 15 chr1 160817219 160817481 -36377951 + Lx8 LINE L1 6959 7226 -247 4 1811 489 213 0 0 chr1 160817485 160817789 -36377643 + GA-rich Low_complexity Low_complexity 1 304 0 4 1811 757 254 34 56 chr1 160817789 160818056 -36377376 + Lx8 LINE L1 7213 7473 0 4 1811 22 35 0 0 chr1 160818056 160818085 -36377347 + AT_rich Low_complexity Low_complexity 1 29 0 4 1811 356 103 17 0 chr1 160818566 160818624 -36376808 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1811 252 0 0 0 chr1 160818624 160818651 -36376781 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1811 217 322 34 22 chr1 160818802 160818891 -36376541 - MIRb SINE MIR -46 222 133 4 1811 649 193 67 0 chr1 160819947 160820082 -36375350 + RLTR11A2 LTR ERVK 1 144 -383 4 1811 1913 152 131 41 chr1 160820177 160820589 -36374843 + RLTR11A2 LTR ERVK 79 527 0 4 1811 1653 221 103 19 chr1 160820804 160821183 -36374249 + MTD LTR MaLR 1 411 -8 4 1811 655 275 25 60 chr1 160821262 160821463 -36373969 + MLT1A1 LTR MaLR 215 408 0 4 1811 471 139 10 19 chr1 160821720 160821823 -36373609 + (TG)n Simple_repeat Simple_repeat 1 102 0 4 1811 228 301 110 55 chr1 160823340 160823449 -36371983 + PB1D7 SINE Alu 1 115 -5 4 1811 271 352 117 24 chr1 160823962 160824253 -36371179 - L2 LINE L2 -1194 2225 1908 4 1811 728 281 138 33 chr1 160824529 160824805 -36370627 + LTR16A1 LTR ERVL 54 358 -98 4 226 1555 37 0 50 chr1 160825213 160825412 -36370020 + L1_Mus1 LINE L1 6376 6564 -3 4 1812 474 302 75 88 chr1 160825495 160825800 -36369632 + ORR1E LTR MaLR 1 301 -58 4 1812 234 0 0 0 chr1 160826511 160826537 -36368895 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4 1812 180 0 0 0 chr1 160826596 160826616 -36368816 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1812 288 0 0 0 chr1 160826616 160826648 -36368784 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 1812 405 0 0 0 chr1 160827791 160827836 -36367596 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1812 422 320 21 64 chr1 160827854 160828041 -36367391 + MER58C DNA MER1_type 22 200 -15 4 1812 332 208 178 50 chr1 160828523 160828624 -36366808 - PB1D10 SINE Alu 0 117 4 4 1812 532 219 13 0 chr1 160829173 160829284 -36366148 - B1_Mus1 SINE Alu -2 118 1 4 1812 351 0 0 0 chr1 160829398 160829437 -36365995 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1812 479 258 21 0 chr1 160829439 160829536 -36365896 - B1_Mur1 SINE Alu -9 140 42 4 1812 915 156 0 0 chr1 160829602 160829762 -36365670 + (TCTCTG)n Simple_repeat Simple_repeat 3 162 0 4 1812 188 103 0 49 chr1 160830229 160830270 -36365162 + A-rich Low_complexity Low_complexity 1 39 0 4 1812 206 329 29 0 chr1 160830346 160830416 -36365016 + MIR SINE MIR 31 102 -160 4 1812 475 318 58 0 chr1 160830468 160830622 -36364810 + RSINE1 SINE B4 2 164 -1 4 1812 23 0 0 0 chr1 160831366 160831389 -36364043 + AT_rich Low_complexity Low_complexity 1 23 0 4 1812 459 0 0 0 chr1 160831461 160831512 -36363920 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1812 230 0 33 0 chr1 160832044 160832074 -36363358 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1812 201 139 0 0 chr1 160832075 160832118 -36363314 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1812 417 86 0 0 chr1 160832280 160832338 -36363094 + (GGA)n Simple_repeat Simple_repeat 3 60 0 4 1812 1182 100 0 0 chr1 160832338 160832518 -36362914 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1812 341 274 151 0 chr1 160833081 160833187 -36362245 - B1F2 SINE Alu -9 140 19 4 1812 186 43 0 0 chr1 160833400 160833423 -36362009 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1812 3562 80 2 8 chr1 160833579 160834060 -36361372 + Lx LINE L1 6177 6654 0 4 1812 207 0 0 0 chr1 160834964 160834987 -36360445 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1812 23 0 0 0 chr1 160835547 160835570 -36359862 + AT_rich Low_complexity Low_complexity 1 23 0 4 1812 21 71 0 0 chr1 160835678 160835720 -36359712 + AT_rich Low_complexity Low_complexity 1 42 0 4 1812 273 264 199 41 chr1 160836954 160837100 -36358332 + MIR SINE MIR 77 245 -17 4 1812 243 323 0 10 chr1 160837118 160837215 -36358217 + CT-rich Low_complexity Low_complexity 1 96 0 4 1812 29 0 0 0 chr1 160837254 160837283 -36358149 + AT_rich Low_complexity Low_complexity 1 29 0 4 1812 195 100 0 0 chr1 160837297 160837327 -36358105 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1812 533 292 7 27 chr1 160837331 160837479 -36357953 - B3 SINE B2 -67 149 5 4 1812 1188 48 7 0 chr1 160837872 160838018 -36357414 + B1_Mus1 SINE Alu 2 148 0 4 1812 878 170 0 6 chr1 160838023 160838195 -36357237 + A-rich Low_complexity Low_complexity 2 172 0 4 1812 383 258 218 40 chr1 160838914 160839217 -36356215 - L1MB8 LINE L1 -30 6148 5792 4 1812 707 287 138 0 chr1 160839218 160839500 -36355932 - Lx8 LINE L1 -6 7467 7147 4 1812 189 0 0 0 chr1 160841963 160841984 -36353448 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1812 542 311 34 51 chr1 160842838 160843072 -36352360 + B4A SINE B4 3 232 -60 4 1812 229 342 17 9 chr1 160843072 160843187 -36352245 + (CATA)n Simple_repeat Simple_repeat 1 116 0 4 1812 819 266 71 39 chr1 160843259 160843712 -36351720 - Lx9 LINE L1 -1567 6077 5607 4 1812 722 272 11 6 chr1 160843714 160843895 -36351537 + Lx9 LINE L1 6867 7048 -596 4 1812 212 225 49 24 chr1 160843895 160844018 -36351414 + (TA)n Simple_repeat Simple_repeat 1 126 0 4 1812 511 332 38 47 chr1 160844043 160844384 -36351048 + Lx9 LINE L1 7115 7452 -192 4 1812 233 312 21 10 chr1 160844568 160844665 -36350767 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 1812 21 36 0 0 chr1 160844696 160844724 -36350708 + AT_rich Low_complexity Low_complexity 1 28 0 4 1812 3524 23 2 0 chr1 160845018 160845413 -36350019 - MTA_Mm LTR MaLR 0 396 1 4 1812 364 236 0 0 chr1 160846479 160846551 -36348881 + ID4_ SINE ID 12 83 0 4 1812 226 308 41 116 chr1 160847663 160847784 -36347648 + MLT1A1 LTR MaLR 40 151 -257 4 1812 400 268 0 0 chr1 160851430 160851512 -36343920 - ID4_ SINE ID 0 83 2 4 1812 7706 62 28 2 chr1 160852698 160853756 -36341676 + L1_Mus2 LINE L1 5485 6565 -1 4 1812 244 371 8 33 chr1 160853798 160853918 -36341514 - L3 LINE CR1 -411 4078 3962 4 1812 252 363 105 28 chr1 160854852 160855204 -36340228 + L2a LINE L2 3048 3426 0 4 1812 1967 156 16 41 chr1 160855397 160855765 -36339667 - RLTR15 LTR ERVK 0 359 1 4 1812 25 0 0 0 chr1 160856091 160856116 -36339316 + AT_rich Low_complexity Low_complexity 1 25 0 4 1812 346 257 25 76 chr1 160856811 160856929 -36338503 + RSINE1 SINE B4 53 164 -1 4 1812 332 43 0 21 chr1 160856941 160856988 -36338444 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 1812 581 138 303 0 chr1 160857587 160857696 -36337736 - B1_Mur4 SINE Alu -7 143 2 4 1812 24 0 0 0 chr1 160857729 160857753 -36337679 + AT_rich Low_complexity Low_complexity 1 24 0 4 1812 4567 81 5 2 chr1 160858334 160858983 -36336449 + L1_Mus3 LINE L1 6006 6638 0 4 1812 285 98 0 0 chr1 160859445 160859486 -36335946 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1812 894 220 44 6 chr1 160859635 160859818 -36335614 - MER58A DNA MER1_type -34 190 1 4 1812 287 357 114 21 chr1 160859840 160860533 -36334899 - L2a LINE L2 -9 3417 2661 4 1812 180 0 0 0 chr1 160861411 160861431 -36334001 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1812 322 299 126 46 chr1 160863679 160863854 -36331578 + B3A SINE B2 3 191 -7 4 1812 675 133 157 45 chr1 160863921 160864055 -36331377 + B1_Mur4 SINE Alu 2 150 0 4 1812 187 31 62 0 chr1 160864057 160864089 -36331343 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1812 26 30 0 0 chr1 160864097 160864130 -36331302 + AT_rich Low_complexity Low_complexity 1 33 0 4 1812 750 286 40 40 chr1 160864249 160864522 -36330910 + B4 SINE B4 2 274 -18 4 1812 232 329 90 59 chr1 160865103 160865358 -36330074 + ORR1E LTR MaLR 96 358 -1 4 1812 249 22 89 0 chr1 160865973 160866018 -36329414 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 4 1812 927 165 156 25 chr1 160868023 160868222 -36327210 + URR1B DNA MER1_type 1 225 0 4 1812 231 36 0 0 chr1 160868864 160868892 -36326540 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1812 513 163 0 0 chr1 160868926 160869018 -36326414 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1812 304 82 0 0 chr1 160869037 160869086 -36326346 - Lx3A LINE L1 0 6981 6933 4 1812 415 343 7 7 chr1 160869522 160869666 -36325766 - MER63A DNA AcHobo -56 154 11 4 1812 180 77 0 0 chr1 160871209 160871235 -36324197 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1812 489 17 0 0 chr1 160872827 160872885 -36322547 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1812 242 259 17 0 chr1 160873717 160873775 -36321657 - ID4 SINE ID -11 72 14 4 1812 189 0 0 0 chr1 160876401 160876422 -36319010 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1812 184 207 118 65 chr1 160876739 160876832 -36318600 + MIRc SINE MIR 41 138 -130 4 1812 1659 110 0 34 chr1 160877414 160877678 -36317754 + RLTR12A LTR ERVK 1 255 -313 5 1812 482 174 103 14 chr1 160877776 160877922 -36317510 + RLTR12A LTR ERVK 399 557 -11 5 1812 25 65 0 0 chr1 160877926 160877972 -36317460 + AT_rich Low_complexity Low_complexity 1 46 0 5 1812 209 241 48 164 chr1 160877978 160878082 -36317350 + L2c LINE L2 3279 3370 -17 5 1812 216 97 0 0 chr1 160878082 160878113 -36317319 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 5 1812 582 174 22 0 chr1 160878779 160878917 -36316515 + CT-rich Low_complexity Low_complexity 3 143 0 5 1812 554 305 30 15 chr1 160879811 160880011 -36315421 + MER58A DNA MER1_type 7 209 -15 5 1812 558 67 0 0 chr1 160880079 160880154 -36315278 + (CAG)n Simple_repeat Simple_repeat 3 77 0 5 1812 321 329 40 34 chr1 160880245 160880393 -36315039 - LTR16B2 LTR ERVL -24 438 290 5 1812 659 267 30 15 chr1 160880673 160880871 -36314561 - MER58A DNA MER1_type -23 201 1 5 1812 315 0 0 0 chr1 160881324 160881359 -36314073 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1812 249 139 0 0 chr1 160882561 160882604 -36312828 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1812 268 217 10 115 chr1 160882817 160882921 -36312511 + L2c LINE L2 3295 3387 0 5 1812 387 0 0 0 chr1 160883623 160883666 -36311766 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1812 342 67 0 0 chr1 160885514 160885559 -36309873 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 5 1812 214 50 50 0 chr1 160888101 160888141 -36307291 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1812 342 0 0 0 chr1 160888175 160888213 -36307219 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 5 1812 435 68 0 0 chr1 160888561 160888620 -36306812 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1812 603 0 0 0 chr1 160888893 160888960 -36306472 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1812 345 75 0 0 chr1 160888960 160889012 -36306420 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1812 527 155 10 0 chr1 160890027 160890130 -36305302 + GA-rich Low_complexity Low_complexity 1 104 0 5 1812 576 0 0 0 chr1 160890432 160890496 -36304936 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1812 393 39 0 0 chr1 160890933 160890984 -36304448 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1812 181 246 23 40 chr1 160891593 160891767 -36303665 + GA-rich Low_complexity Low_complexity 4 174 0 5 1812 339 213 0 0 chr1 160892238 160892313 -36303119 + A-rich Low_complexity Low_complexity 1 75 0 5 1812 357 271 125 86 chr1 160893803 160894061 -36301371 + L1ME1 LINE L1 5814 6082 -97 5 1812 315 0 0 0 chr1 160894557 160894592 -36300840 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1812 640 0 25 0 chr1 160894592 160894671 -36300761 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1812 24 0 0 0 chr1 160894776 160894800 -36300632 + AT_rich Low_complexity Low_complexity 1 24 0 5 1812 248 267 17 0 chr1 160895098 160895158 -36300274 - MIRb SINE MIR -75 193 133 5 1812 189 0 0 0 chr1 160895860 160895881 -36299551 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1812 204 40 0 0 chr1 160895888 160895913 -36299519 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 1812 967 123 0 14 chr1 160895913 160896053 -36299379 - B1_Mur4 SINE Alu -12 138 1 5 1812 23 54 0 0 chr1 160896553 160896590 -36298842 + AT_rich Low_complexity Low_complexity 1 37 0 5 1812 4921 204 22 25 chr1 160896592 160897730 -36297702 - RMER1A Other Other -3 1027 47 5 1812 283 344 64 47 chr1 160897730 160897901 -36297531 - RLTR9E LTR ERVK -1 408 235 5 1812 5269 306 44 48 chr1 160899937 160902558 -36292874 - ETnERV2-int LTR ERVK -1339 6067 2473 5 1812 1497 331 67 55 chr1 160902539 160904023 -36291409 - ETnERV2-int LTR ERVK -4367 1800 433 5 1812 216 0 0 0 chr1 160904115 160904139 -36291293 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1812 2598 111 135 13 chr1 160904156 160904630 -36290802 + RLTR47_MM LTR ERV1 1 532 0 5 1812 880 343 55 46 chr1 160905365 160905414 -36290018 + MuRRS4-int LTR ERV1 1287 1344 -6434 5 1812 450 0 0 0 chr1 160905414 160905464 -36289968 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1812 995 335 15 36 chr1 160905464 160906055 -36289377 + MuRRS4-int LTR ERV1 1159 1936 -5842 5 1812 825 88 14 7 chr1 160906055 160906193 -36289239 + (GAA)n Simple_repeat Simple_repeat 3 141 0 5 1812 880 282 75 138 chr1 160906193 160906743 -36288689 + MuRRS4-int LTR ERV1 1937 2448 -5108 5 1812 1884 325 76 51 chr1 160906841 160908384 -36287048 + MuLV-int LTR ERV1 4029 5700 -2078 5 1812 817 285 59 28 chr1 160908633 160909067 -36286365 + MuRRS4-int LTR ERV1 4544 4933 -130 5 1812 2306 116 145 28 chr1 160909164 160909633 -36285799 + RLTR47_MM LTR ERV1 1 524 -8 5 1812 317 266 115 25 chr1 160909915 160910075 -36285357 - RLTR9E LTR ERVK -3 390 239 5 1812 935 238 64 0 chr1 160910300 160910502 -36284930 - RMER1B Other Other -851 215 1 5 1812 28 0 0 0 chr1 160910921 160910949 -36284483 + AT_rich Low_complexity Low_complexity 1 28 0 5 1812 1159 75 0 0 chr1 160910957 160911103 -36284329 + B1_Mus2 SINE Alu 1 146 -1 5 1812 2167 206 53 14 chr1 160911345 160911854 -36283578 - MT2A LTR ERVL 0 533 3 5 1812 1034 70 0 0 chr1 160912709 160912851 -36282581 - L1Md_T LINE L1 0 6582 6441 5 1812 695 313 10 64 chr1 160913346 160913401 -36282031 + Lx8 LINE L1 6128 6178 -1295 5 1812 281 47 23 0 chr1 160913401 160913444 -36281988 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1812 1077 81 7 0 chr1 160913444 160913580 -36281852 - B1_Mm SINE Alu -10 137 1 5 1812 695 313 10 64 chr1 160913580 160913820 -36281612 + Lx8 LINE L1 6179 6407 -1066 5 1812 2308 311 66 11 chr1 160913991 160914777 -36280655 + Lx8 LINE L1 6428 7256 -217 5 1812 316 226 0 0 chr1 160914789 160914851 -36280581 + RMER15 LTR ERVL 409 470 -105 5 1812 438 326 64 25 chr1 160915175 160915455 -36279977 - MER20B DNA MER1_type -296 487 197 5 1812 345 364 117 0 chr1 160915754 160915908 -36279524 + MER47B DNA MER2_type 73 244 -174 5 1812 350 340 26 0 chr1 160915938 160916094 -36279338 - L1MD LINE L1 -843 5303 5144 5 1812 441 236 19 19 chr1 160916147 160916255 -36279177 - PB1D10 SINE Alu -2 115 8 5 1812 275 200 33 0 chr1 160916202 160916262 -36279170 - B4A SINE B4 -147 145 84 5 1812 2454 154 60 5 chr1 160916561 160916960 -36278472 + MTC LTR MaLR 1 421 0 5 1812 1218 35 0 0 chr1 160917064 160917205 -36278227 + B1_Mus2 SINE Alu 1 141 -6 5 1812 257 0 30 0 chr1 160917208 160917241 -36278191 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1812 3312 275 66 28 chr1 160917783 160918922 -36276510 - Lx9 LINE L1 0 7644 6463 5 1812 1070 102 6 40 chr1 160919057 160919231 -36276201 - L1Md_F2 LINE L1 -2 6580 6413 5 1812 253 291 37 14 chr1 160919760 160919867 -36275565 + L2c LINE L2 3256 3366 -9 5 1812 252 0 0 0 chr1 160921675 160921703 -36273729 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1812 225 0 0 0 chr1 160922843 160922868 -36272564 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1812 1352 165 29 80 chr1 160923477 160923614 -36271818 + Lx9 LINE L1 7314 7447 -197 5 1812 671 177 13 20 chr1 160923614 160923764 -36271668 + Lx4A LINE L1 6910 7058 0 5 1812 1352 165 29 80 chr1 160923764 160923827 -36271605 + Lx9 LINE L1 7448 7499 -145 5 1812 273 57 0 0 chr1 160923827 160923862 -36271570 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1812 1352 165 29 80 chr1 160923862 160924009 -36271423 + Lx9 LINE L1 7500 7644 0 5 1812 1045 236 93 0 chr1 160924044 160924303 -36271129 + RMER1A Other Other 73 355 -675 5 1812 1386 300 124 50 chr1 160924315 160925813 -36269619 + L1M2 LINE L1 4177 5821 -476 5 1812 745 298 74 30 chr1 160926008 160926560 -36268872 - Lx8 LINE L1 -1635 6009 5401 5 1812 362 258 44 69 chr1 160926551 160926577 -36268855 - L1M2 LINE L1 -2316 3827 3802 5 1812 324 0 0 0 chr1 160926577 160926613 -36268819 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1812 362 258 44 69 chr1 160926613 160926790 -36268642 - L1M2 LINE L1 -2342 3801 3630 5 1812 24 0 0 0 chr1 160927785 160927809 -36267623 + AT_rich Low_complexity Low_complexity 1 24 0 5 1812 455 48 16 0 chr1 160927847 160927909 -36267523 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1812 537 92 0 0 chr1 160929381 160929457 -36265975 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1812 782 279 58 19 chr1 160929481 160929740 -36265692 - B4 SINE B4 -21 271 3 5 1812 318 390 37 0 chr1 160929740 160929889 -36265543 - MLT1J LTR MaLR -144 368 214 5 1812 340 255 8 116 chr1 160930830 160931101 -36264331 - Charlie5 DNA MER1_type 0 2624 2396 5 1812 369 0 0 0 chr1 160931101 160931142 -36264290 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1812 310 267 7 157 chr1 160931142 160931163 -36264269 - Charlie5 DNA MER1_type -229 2395 2377 5 1812 261 0 0 0 chr1 160932081 160932110 -36263322 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1812 1845 219 70 7 chr1 160935616 160936029 -36259403 - Lx7 LINE L1 -649 7047 6609 5 1812 6545 159 47 4 chr1 160936227 160937354 -36258078 - Lx4B LINE L1 -8 7050 5876 5 1812 2044 119 58 0 chr1 160937354 160937665 -36257767 - ORR1A4 LTR MaLR 0 329 1 5 1812 3038 136 4 2 chr1 160937670 160938136 -36257296 + L1_Mur2 LINE L1 5222 5688 -189 5 1812 1127 227 97 78 chr1 160938294 160938491 -36256941 - MTD LTR MaLR 0 419 213 5 1812 821 236 29 15 chr1 160938491 160938697 -36256735 - B3 SINE B2 -4 212 4 5 1812 1127 227 97 78 chr1 160938697 160938910 -36256522 - MTD LTR MaLR -207 212 1 5 1812 379 357 60 23 chr1 160939841 160940059 -36255373 - MLT1J2 LTR MaLR -210 238 13 5 1812 251 263 13 0 chr1 160941573 160941649 -36253783 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 5 1812 1521 37 4 0 chr1 160941752 160941994 -36253438 + (TCTCCC)n Simple_repeat Simple_repeat 1 242 0 5 1812 310 303 93 56 chr1 160942083 160942244 -36253188 - MLT1G3 LTR MaLR -235 360 194 5 1812 537 58 0 0 chr1 160943941 160944010 -36251422 + (CTATG)n Simple_repeat Simple_repeat 1 69 0 5 1812 180 0 0 0 chr1 160944787 160944807 -36250625 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1812 786 318 89 10 chr1 160946101 160946403 -36249029 - MLT1A1 LTR MaLR -10 398 73 5 1812 353 291 0 21 chr1 160946417 160946528 -36248904 - B1F SINE Alu -1 119 11 5 1812 282 336 18 18 chr1 160947582 160947694 -36247738 + L2b LINE L2 3081 3192 -183 5 1812 2190 224 34 39 chr1 160948860 160949399 -36246033 + Lx9 LINE L1 5010 5545 -302 5 1812 1408 91 37 11 chr1 160949399 160949588 -36245844 + B2_Mm2 SINE B2 2 195 0 5 1812 2190 192 537 22 chr1 160949588 160949733 -36245699 + Lx9 LINE L1 5546 5766 -81 5 1812 380 55 18 0 chr1 160949737 160949792 -36245640 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 5 1812 379 287 171 6 chr1 160949793 160949951 -36245481 + Lx9 LINE L1 5844 6027 -1617 5 1812 337 240 147 45 chr1 160950416 160950573 -36244859 + MER96B DNA hAT 2 174 -243 6 1812 1474 175 93 0 chr1 160951136 160951405 -36244027 - MTD LTR MaLR 0 419 126 6 1812 1442 24 0 12 chr1 160951712 160951884 -36243548 + L1Md_F3 LINE L1 6401 6570 -14 6 226 34988 49 12 15 chr1 160951984 160957098 -36238334 + L1Md_Gf LINE L1 1 4954 -932 6 1813 227 183 46 77 chr1 160957098 160957163 -36238269 - RMER20A LTR ERVK -268 248 186 6 1813 34988 49 12 15 chr1 160957163 160957817 -36237615 + L1Md_Gf LINE L1 4955 5589 -297 6 1813 9075 28 1 0 chr1 160957817 160958812 -36236620 + L1Md_T LINE L1 5587 6582 0 6 1813 942 285 51 143 chr1 160959173 160959740 -36235692 + MLT1D LTR MaLR 11 505 0 6 1813 1018 248 45 34 chr1 160959918 160960185 -36235247 - MTEa LTR MaLR -109 270 1 6 1813 834 167 57 14 chr1 160960878 160961018 -36234414 - B1_Mur4 SINE Alu 0 150 5 6 1813 217 179 0 51 chr1 160961537 160961596 -36233836 + T-rich Low_complexity Low_complexity 3 58 0 6 1813 237 119 0 0 chr1 160963844 160963886 -36231546 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1813 242 197 0 29 chr1 160963900 160963968 -36231464 + GA-rich Low_complexity Low_complexity 4 69 0 6 1813 612 262 141 11 chr1 160964213 160964398 -36231034 + B3 SINE B2 1 209 -7 6 1813 684 274 14 54 chr1 160964734 160964931 -36230501 + B3A SINE B2 1 182 -13 6 1813 479 338 46 51 chr1 160965173 160965504 -36229928 - Charlie8 DNA MER1_type -2104 324 1 6 1813 288 0 0 0 chr1 160965564 160965596 -36229836 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1813 234 154 0 0 chr1 160965962 160966001 -36229431 - RMER10A LTR ERVL -403 39 1 6 1813 374 315 110 39 chr1 160967629 160967784 -36227648 + LTR79 LTR ERVL 94 259 -268 6 1813 208 346 21 106 chr1 160968593 160968735 -36226697 - L2c LINE L2 -4 3383 3254 6 1813 329 253 52 52 chr1 160969219 160969411 -36226021 + MER112 DNA MER1_type 4 195 -66 6 1813 1610 196 108 15 chr1 160969565 160969661 -36225771 + ORR1C1 LTR MaLR 5 96 -282 6 1813 210 105 0 0 chr1 160969661 160969699 -36225733 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 6 1813 1419 34 0 0 chr1 160969701 160969878 -36225554 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1813 1610 196 108 15 chr1 160969878 160970120 -36225312 + ORR1C1 LTR MaLR 97 374 -4 6 1813 240 337 63 34 chr1 160970207 160970382 -36225050 - MIRc SINE MIR -39 229 50 6 1813 296 64 21 0 chr1 160970931 160970978 -36224454 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1813 404 242 127 104 chr1 160970980 160971248 -36224184 - B4 SINE B4 -15 277 4 6 1813 886 257 74 52 chr1 160972045 160972446 -36222986 + RMER20B LTR ERVK 90 505 -11 6 1813 275 307 97 17 chr1 160972559 160972743 -36222689 + MER34A LTR ERV1 225 425 -162 6 1813 878 252 281 16 chr1 160972789 160973246 -36222186 + L1MCa LINE L1 1004 1581 -4927 6 1813 339 293 177 23 chr1 160973836 160974056 -36221376 - L2 LINE L2 -1173 2246 1993 6 1813 383 56 19 0 chr1 160975186 160975240 -36220192 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1813 392 247 191 32 chr1 160975903 160976091 -36219341 - LFSINE_Vert SINE SINE -106 353 136 6 1813 282 29 0 0 chr1 160977103 160977138 -36218294 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1813 251 330 20 20 chr1 160977145 160977244 -36218188 + MIR SINE MIR 74 172 -90 6 1813 182 211 53 0 chr1 160977297 160977335 -36218097 + L3 LINE CR1 881 920 -3569 6 1813 270 333 98 0 chr1 160977679 160977802 -36217630 - MIRb SINE MIR -35 233 99 6 1813 483 282 96 14 chr1 160977809 160978008 -36217424 - MTEa LTR MaLR -1 378 141 6 1813 1276 185 9 26 chr1 160978008 160978236 -36217196 + URR1B DNA MER1_type 1 224 -1 6 1813 434 281 30 40 chr1 160978236 160978323 -36217109 - MTEa LTR MaLR -219 140 14 6 1813 409 233 22 65 chr1 160978398 160978490 -36216942 - B4 SINE B4 -124 168 81 6 1813 1971 279 148 61 chr1 160978500 160978619 -36216813 - RMER1C Other Other -8 1334 1187 6 1813 252 0 0 0 chr1 160978619 160978647 -36216785 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1813 1971 282 145 55 chr1 160978647 160979528 -36215904 - RMER1C Other Other -156 1186 175 6 1813 326 323 0 41 chr1 160979850 160979947 -36215485 - B4 SINE B4 -195 97 5 6 1813 228 351 14 78 chr1 160980103 160980245 -36215187 - ID_B1 SINE B4 -1 223 91 6 1813 733 197 6 8 chr1 160980586 160980736 -36214696 - ID_B1 SINE B4 -68 224 77 6 1813 299 146 18 0 chr1 160981304 160981359 -36214073 - L2b LINE L2 0 3375 3320 6 1813 27 0 0 0 chr1 160981692 160981719 -36213713 + AT_rich Low_complexity Low_complexity 1 27 0 6 1813 1101 311 85 12 chr1 160982003 160982716 -36212716 + L1MC2 LINE L1 5298 6116 -228 6 1813 237 312 42 92 chr1 160982895 160983015 -36212417 + PB1D10 SINE Alu 2 115 -2 6 1813 308 301 58 89 chr1 160983164 160983423 -36212009 + L1MC2 LINE L1 6719 6969 -1073 6 1813 727 243 105 5 chr1 160983429 160983619 -36211813 + B4A SINE B4 7 215 -77 6 1813 369 0 0 0 chr1 160983624 160983665 -36211767 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1813 220 91 45 0 chr1 160983747 160983791 -36211641 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1813 787 272 272 0 chr1 160984060 160984288 -36211144 + B4A SINE B4 1 290 -2 6 1813 293 293 94 47 chr1 160984466 160984699 -36210733 + L1MC2 LINE L1 7288 7531 -430 6 1813 3468 218 58 19 chr1 160985855 160986736 -36208696 + RCHARR1 DNA MER1_type 59 973 -1 6 1813 696 308 94 41 chr1 160987336 160987675 -36207757 - ORR1E LTR MaLR -2 357 1 6 1813 703 268 10 72 chr1 160987835 160988044 -36207388 + B3A SINE B2 3 198 0 6 1813 21 36 0 0 chr1 160988311 160988339 -36207093 + AT_rich Low_complexity Low_complexity 1 28 0 6 1813 855 143 8 8 chr1 160988406 160988533 -36206899 + B1_Mus2 SINE Alu 5 131 -16 6 1813 1349 46 6 0 chr1 160988539 160988712 -36206720 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 6 1813 720 196 0 16 chr1 160988712 160988894 -36206538 + GA-rich Low_complexity Low_complexity 2 180 0 6 1813 760 152 6 27 chr1 160988924 160989107 -36206325 + GA-rich Low_complexity Low_complexity 1 179 0 6 1813 642 297 102 37 chr1 160990012 160990649 -36204783 - L1M2 LINE L1 -613 5678 5007 6 1813 327 319 29 29 chr1 160990720 160990859 -36204573 - RMER15 LTR ERVL -90 485 347 6 1813 1161 135 165 5 chr1 160990922 160991116 -36204316 - URR1B DNA MER1_type 0 225 1 6 1813 640 295 168 7 chr1 160991359 160991823 -36203609 - L1M2 LINE L1 -1139 5004 4429 6 1813 1388 296 21 70 chr1 160991820 160992146 -36203286 + L1MA7 LINE L1 5660 5935 -365 6 1813 331 21 20 20 chr1 160992146 160992195 -36203237 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1813 1388 291 13 51 chr1 160992195 160992550 -36202882 + L1MA7 LINE L1 5936 6291 0 6 1813 399 278 36 97 chr1 160993448 160993643 -36201789 + L1MA6 LINE L1 5966 6148 -143 6 1813 405 257 0 0 chr1 160993815 160993916 -36201516 + L1M5 LINE L1 5619 5719 -405 6 1813 387 0 0 0 chr1 160993918 160993961 -36201471 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1813 186 308 19 0 chr1 160994653 160994705 -36200727 + L2c LINE L2 3294 3346 -41 6 1813 356 387 58 6 chr1 160994720 160994876 -36200556 - MER45A DNA Tip100 -14 164 1 6 1813 222 171 0 0 chr1 160994913 160994954 -36200478 + GA-rich Low_complexity Low_complexity 3 43 0 6 1813 191 297 161 15 chr1 160995752 160995882 -36199550 - MIRc SINE MIR -98 170 22 6 1813 344 275 25 12 chr1 160996122 160996203 -36199229 - ID4_ SINE ID 0 83 2 6 1813 2318 157 40 5 chr1 160996658 160997037 -36198395 + ORR1B1 LTR MaLR 1 392 -2 6 1813 270 0 0 0 chr1 160997819 160997849 -36197583 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1813 420 55 0 0 chr1 160997849 160997904 -36197528 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1813 512 284 0 0 chr1 160999523 160999632 -36195800 - PB1D10 SINE Alu -8 109 1 6 1813 330 236 27 14 chr1 160999658 160999731 -36195701 + ID4_ SINE ID 1 74 -9 6 1813 381 212 0 0 chr1 160999757 160999875 -36195557 + (TG)n Simple_repeat Simple_repeat 2 119 0 6 1813 249 322 0 0 chr1 161001243 161001302 -36194130 - ID4_ SINE ID -23 60 2 1 1813 291 242 133 0 chr1 161001313 161001441 -36193991 - L1M5 LINE L1 -682 5480 5336 2 1813 636 155 25 37 chr1 161002025 161002186 -36193246 - RMER1A Other Other -3 1027 869 3 1813 1469 191 70 9 chr1 161002231 161002667 -36192765 + MYSERV16_I-int LTR ERVK 1830 2262 -64 4 1813 294 29 0 0 chr1 161002667 161002702 -36192730 + (TTA)n Simple_repeat Simple_repeat 1 35 0 5 1813 1319 231 48 37 chr1 161002702 161002717 -36192715 + MYSERV16_I-int LTR ERVK 2827 2841 -1 4 1813 1717 156 20 3 chr1 161002718 161003021 -36192411 + RLTR31A_Mm LTR ERVK 1 308 -276 4 1813 3031 221 158 6 chr1 161003023 161003986 -36191446 - RMER1A Other Other -179 851 1 3 1813 1555 279 19 51 chr1 161004015 161004548 -36190884 - RMER1B Other Other -535 531 16 6 1813 2248 152 47 13 chr1 161004716 161005097 -36190335 - ORR1B1 LTR MaLR 0 394 1 7 1813 37 23 0 0 chr1 161005265 161005309 -36190123 + AT_rich Low_complexity Low_complexity 1 44 0 8 1813 276 383 138 26 chr1 161005335 161005726 -36189706 - MLT1K LTR MaLR -133 462 28 9 1813 21 0 0 0 chr1 161006029 161006050 -36189382 + AT_rich Low_complexity Low_complexity 1 21 0 1 1813 401 271 27 67 chr1 161006069 161006219 -36189213 - YREP_Mm Unknown Unknown -1483 329 186 1 1813 819 182 0 0 chr1 161006095 161006221 -36189211 + ID_B1 SINE B4 92 217 -7 1 1813 191 304 10 80 chr1 161006569 161006669 -36188763 + L2a LINE L2 2916 3008 -418 1 1813 462 18 0 0 chr1 161006913 161006968 -36188464 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1813 703 301 77 15 chr1 161007055 161007315 -36188117 - LTR16A1 LTR ERVL -2 454 179 1 1813 1188 175 87 191 chr1 161008160 161008584 -36186848 + ORR1C2 LTR MaLR 1 380 -4 1 1813 269 132 93 35 chr1 161008594 161008680 -36186752 - Lx8 LINE L1 -33 7440 7350 1 1813 366 226 214 50 chr1 161008710 161008850 -36186582 - RSINE1 SINE B4 0 165 3 1 1813 1348 244 37 5 chr1 161009385 161009833 -36185599 - L1ME3A LINE L1 -131 6033 5577 1 1813 210 98 49 0 chr1 161011022 161011063 -36184369 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1813 868 323 52 51 chr1 161011262 161011814 -36183618 + LTR73 LTR ERV1 1 553 -19 2 1813 221 301 123 0 chr1 161012948 161013021 -36182411 + MIR SINE MIR 60 141 -121 2 1813 1188 227 133 3 chr1 161013218 161013549 -36181883 + ORR1D1 LTR MaLR 1 374 0 2 1813 203 315 0 0 chr1 161014357 161014411 -36181021 + GA-rich Low_complexity Low_complexity 3 56 0 2 1813 1146 142 108 0 chr1 161014945 161015149 -36180283 + URR1A DNA MER1_type 1 226 0 2 1813 721 249 73 103 chr1 161015757 161015990 -36179442 - B4 SINE B4 -66 226 1 2 1813 1307 76 11 21 chr1 161016260 161016448 -36178984 - B2_Mm2 SINE B2 -9 186 1 2 1813 26 30 0 0 chr1 161016456 161016489 -36178943 + AT_rich Low_complexity Low_complexity 1 33 0 2 1813 186 103 0 0 chr1 161016490 161016519 -36178913 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1813 321 118 0 0 chr1 161016526 161016577 -36178855 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1813 558 272 47 20 chr1 161016586 161016736 -36178696 - RSINE1 SINE B4 -7 158 5 3 1813 7112 58 31 3 chr1 161017235 161018499 -36176933 - L1Md_F2 LINE L1 -1 6581 5286 3 1813 641 227 121 0 chr1 161019551 161019683 -36175749 + B3 SINE B2 1 148 -68 3 1813 414 229 41 10 chr1 161019691 161019788 -36175644 - MTE2b LTR MaLR -33 346 247 3 1813 1988 152 55 0 chr1 161019819 161020149 -36175283 + MTC LTR MaLR 74 421 0 3 1813 421 238 49 211 chr1 161020157 161020423 -36175009 - MTE2b LTR MaLR -156 223 1 3 1813 486 0 0 0 chr1 161020435 161020489 -36174943 + (TTCTC)n Simple_repeat Simple_repeat 1 54 0 3 1813 4564 76 10 5 chr1 161020855 161021467 -36173965 + L1_Mus3 LINE L1 6023 6637 -1 3 1813 306 265 36 125 chr1 161023482 161023594 -36171838 - MIR3 SINE MIR -26 182 81 3 1813 231 385 0 50 chr1 161024694 161024795 -36170637 - LTR16A LTR ERVL -355 96 1 3 1813 329 169 34 0 chr1 161025610 161025669 -36169763 - ORR1C1 LTR MaLR -13 365 305 4 1813 2556 190 69 37 chr1 161025636 161025725 -36169707 - ORR1C1-int LTR MaLR -46 1463 1405 4 1813 5727 78 43 3 chr1 161025725 161026498 -36168934 + Lx3_Mus LINE L1 6206 7009 0 4 1813 2556 162 80 17 chr1 161026498 161026964 -36168468 - ORR1C1-int LTR MaLR -105 1404 905 4 1813 552 261 22 7 chr1 161026941 161027076 -36168356 - ORR1C1-int LTR MaLR -635 735 599 4 1813 346 75 0 0 chr1 161027081 161027134 -36168298 + L1Md_F2 LINE L1 5915 5967 -615 4 1813 6592 56 1 26 chr1 161027133 161027967 -36167465 + L1Md_F2 LINE L1 5585 6386 -196 4 1813 3396 37 0 2 chr1 161027967 161028375 -36167057 + L1Md_F2 LINE L1 6176 6582 0 4 1813 6592 47 0 27 chr1 161028375 161028453 -36166979 + L1Md_F2 LINE L1 6387 6444 -138 4 1813 28 0 0 0 chr1 161028461 161028489 -36166943 + AT_rich Low_complexity Low_complexity 1 28 0 4 1813 206 192 19 0 chr1 161028734 161028786 -36166646 + (TTA)n Simple_repeat Simple_repeat 2 54 0 4 1813 955 251 37 0 chr1 161028905 161029096 -36166336 - B3 SINE B2 -6 210 13 4 1813 1545 211 128 46 chr1 161029179 161029696 -36165736 + Lx9 LINE L1 6959 7517 -127 4 1813 312 28 0 0 chr1 161029700 161029736 -36165696 - HAL1-3A_ME LINE L1 -846 2012 1977 4 1813 568 139 31 19 chr1 161029749 161029910 -36165522 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 1813 648 336 53 21 chr1 161030069 161030409 -36165023 - L3 LINE CR1 -770 3719 3369 5 1813 237 360 45 9 chr1 161030475 161030587 -36164845 + MIR3 SINE MIR 83 198 -10 5 1813 728 182 88 0 chr1 161030857 161030994 -36164438 - B1_Mur4 SINE Alu 0 150 2 5 1813 291 247 64 13 chr1 161031097 161031175 -36164257 + MLT1A1 LTR MaLR 1 82 -283 5 1813 218 75 0 48 chr1 161031226 161031268 -36164164 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1813 373 279 90 73 chr1 161031284 161031462 -36163970 - B3A SINE B2 -16 182 2 5 1813 495 235 72 20 chr1 161031550 161031702 -36163730 + MLT1A1 LTR MaLR 246 405 -3 5 1813 411 21 0 0 chr1 161032049 161032097 -36163335 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1813 208 53 53 0 chr1 161032179 161032217 -36163215 + (TTG)n Simple_repeat Simple_repeat 2 41 0 5 1813 201 74 0 0 chr1 161033337 161033364 -36162068 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 1813 385 284 0 33 chr1 161033389 161033480 -36161952 - B1_Mur2 SINE Alu -21 128 41 6 1813 226 79 12 84 chr1 161033495 161033578 -36161854 + CT-rich Low_complexity Low_complexity 6 82 0 6 1813 232 220 0 20 chr1 161033639 161033690 -36161742 + L1MC1 LINE L1 6174 6223 -110 6 1813 243 123 53 27 chr1 161033876 161033951 -36161481 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 1813 242 263 18 0 chr1 161033953 161034010 -36161422 + CT-rich Low_complexity Low_complexity 1 58 0 6 1813 445 268 72 26 chr1 161034014 161034167 -36161265 + MLT1A1 LTR MaLR 248 407 -1 6 1813 449 250 47 31 chr1 161034239 161034367 -36161065 - MLT1D LTR MaLR -375 130 1 6 1813 449 321 69 30 chr1 161035269 161035773 -36159659 + L1MEc LINE L1 404 927 -5473 6 1813 484 348 82 32 chr1 161035791 161036203 -36159229 + MER63B DNA AcHobo 1 433 -3 6 1813 586 280 143 67 chr1 161036259 161036691 -36158741 + L1MEc LINE L1 1005 1469 -4931 6 1813 31 88 0 0 chr1 161036867 161036947 -36158485 + AT_rich Low_complexity Low_complexity 1 80 0 6 1813 2597 157 73 24 chr1 161037059 161037550 -36157882 - RLTR11A2 LTR ERVK -12 515 1 7 1813 433 306 37 18 chr1 161037551 161037714 -36157718 + L1MEc LINE L1 1985 2150 -4250 6 1813 202 244 0 0 chr1 161037725 161037770 -36157662 + A-rich Low_complexity Low_complexity 1 45 0 7 1813 233 357 51 24 chr1 161037911 161038247 -36157185 + L1MEc LINE L1 2307 2651 -3668 6 1813 742 270 60 0 chr1 161038407 161038607 -36156825 + B3 SINE B2 2 213 -3 7 1813 386 288 100 9 chr1 161038703 161038913 -36156519 + L1MC LINE L1 2750 2978 -3168 7 1813 431 237 0 0 chr1 161038925 161039018 -36156414 + RMER1B Other Other 620 712 -354 7 1813 325 177 16 0 chr1 161039178 161039240 -36156192 + RMER1C Other Other 121 183 -1159 7 1813 3201 250 24 102 chr1 161039335 161040505 -36154927 + RMER1C Other Other 370 1340 -2 7 1813 28792 103 34 7 chr1 161040595 161046607 -36148825 + L1_Mus1 LINE L1 380 6567 0 7 1813 242 313 63 22 chr1 161046764 161047032 -36148400 + L1MD LINE L1 3183 3461 -2685 7 1813 257 275 136 40 chr1 161047298 161047571 -36147861 + L1MEc LINE L1 3671 3969 -2350 6 1813 3102 56 44 0 chr1 161047611 161048001 -36147431 - MTB_Mm LTR MaLR 0 407 1 7 1813 6143 146 96 9 chr1 161048004 161049158 -36146274 - MTB_Mm-int LTR MaLR -4 1254 1 7 1813 2079 133 0 108 chr1 161049158 161049537 -36145895 - MTB_Mm LTR MaLR -8 338 1 7 1813 341 98 0 0 chr1 161049604 161049655 -36145777 - ORR1A4 LTR MaLR -54 275 225 8 1813 884 237 19 5 chr1 161049666 161049933 -36145499 + Lx6 LINE L1 6279 6772 -688 8 1813 1274 91 11 0 chr1 161049933 161050109 -36145323 + B2_Mm1t SINE B2 2 179 -14 8 1813 480 106 310 26 chr1 161050175 161050291 -36145141 + B2_Mm2 SINE B2 47 195 0 8 1813 2228 237 37 23 chr1 161050312 161050877 -36144555 + Lx5 LINE L1 6455 7027 -23 8 1813 261 0 0 0 chr1 161050911 161050940 -36144492 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 8 1813 476 281 40 10 chr1 161050968 161051185 -36144247 + L1M3 LINE L1 3954 4181 -1962 8 1813 230 301 38 28 chr1 161053036 161053142 -36142290 - MLT1N2 LTR MaLR -4 558 452 8 1813 592 359 54 98 chr1 161053295 161053833 -36141599 + MLT1F2 LTR MaLR 25 538 -22 8 1813 288 306 204 20 chr1 161053845 161053992 -36141440 + MLT1F2-int LTR MaLR 29 202 -1287 8 1813 420 319 78 85 chr1 161054322 161054593 -36140839 + B4A SINE B4 12 280 -12 8 1813 234 0 0 0 chr1 161054675 161054701 -36140731 + (GA)n Simple_repeat Simple_repeat 1 26 0 9 1813 228 306 84 76 chr1 161055055 161055186 -36140246 - MIRb SINE MIR -106 162 31 9 1813 278 180 16 0 chr1 161055553 161055614 -36139818 + CT-rich Low_complexity Low_complexity 3 64 0 9 1813 413 169 0 12 chr1 161056528 161056564 -36138868 + polypyrimidine Low_complexity Low_complexity 49 84 0 9 1813 1095 139 0 0 chr1 161056564 161056744 -36138688 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1813 413 169 0 12 chr1 161056744 161056791 -36138641 + polypyrimidine Low_complexity Low_complexity 2 48 0 9 1813 497 166 148 4 chr1 161056794 161056928 -36138504 - RMER1B Other Other -3 1063 884 9 1813 1051 130 0 0 chr1 161056928 161057074 -36138358 + B1_Mus1 SINE Alu 2 147 -1 9 1813 345 218 118 39 chr1 161057074 161057092 -36138340 - RMER1A Other Other -147 883 866 9 1813 541 124 21 0 chr1 161057111 161057208 -36138224 + (GAAA)n Simple_repeat Simple_repeat 3 101 0 9 1813 2012 178 14 0 chr1 161057209 161057574 -36137858 - RMER1B Other Other -114 952 583 9 1813 1252 270 116 7 chr1 161058656 161059070 -36136362 + MLT1C LTR MaLR 9 467 0 1 1813 231 343 90 10 chr1 161059452 161059552 -36135880 + MER21B LTR ERV1 5 112 -751 1 1813 576 314 47 0 chr1 161060103 161060272 -36135160 - MTEb LTR MaLR 0 379 203 1 1813 2495 26 19 0 chr1 161060286 161060598 -36134834 - L1Md_F3 LINE L1 -240 6344 6027 1 1813 1065 93 0 0 chr1 161060582 161060733 -36134699 + L1Md_F3 LINE L1 6347 6497 -87 1 1813 953 271 49 19 chr1 161060733 161060798 -36134634 - MTEa LTR MaLR -104 275 203 1 1813 405 0 0 0 chr1 161060798 161060843 -36134589 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1813 953 271 49 19 chr1 161060843 161061044 -36134388 - MTEa LTR MaLR -177 202 2 1 1813 1487 291 82 4 chr1 161061314 161061817 -36133615 + Lx8 LINE L1 6715 7256 -217 1 1813 366 341 97 49 chr1 161062370 161062555 -36132877 + MLT1K LTR MaLR 395 588 -7 1 1813 193 263 88 0 chr1 161062613 161062670 -36132762 + L2c LINE L2 3259 3320 -67 1 1813 268 209 176 15 chr1 161062794 161062862 -36132570 + ORR1E LTR MaLR 1 79 -280 1 1813 186 43 0 0 chr1 161063270 161063293 -36132139 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1813 2082 322 52 20 chr1 161063523 161064561 -36130871 + Lx8 LINE L1 6240 7310 -163 1 1813 202 164 36 0 chr1 161064636 161064691 -36130741 + GA-rich Low_complexity Low_complexity 5 61 0 1 1813 22 0 0 0 chr1 161065990 161066012 -36129420 + AT_rich Low_complexity Low_complexity 1 22 0 1 1813 296 256 62 23 chr1 161066511 161066639 -36128793 + MLT1A0 LTR MaLR 269 407 -1 1 1813 2457 68 39 11 chr1 161066650 161067005 -36128427 - L1Md_F2 LINE L1 -1 6581 6217 1 1813 195 321 136 44 chr1 161067040 161067356 -36128076 + L2a LINE L2 2471 2815 -604 1 1813 2906 278 40 43 chr1 161067496 161068613 -36126819 - Lx8 LINE L1 0 7473 6360 1 1813 559 279 35 46 chr1 161068613 161068786 -36126646 - B4A SINE B4 -114 178 8 1 1813 648 302 144 36 chr1 161068804 161069456 -36125976 - L1MC4 LINE L1 -801 7241 6494 1 1813 189 328 29 15 chr1 161069651 161069719 -36125713 + L2a LINE L2 3356 3424 -2 1 1813 288 0 0 0 chr1 161069888 161069920 -36125512 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1813 416 333 9 9 chr1 161069993 161070105 -36125327 + PB1D10 SINE Alu 1 112 -5 1 1813 430 193 35 0 chr1 161070141 161070255 -36125177 + GA-rich Low_complexity Low_complexity 1 118 0 1 1813 2110 128 48 0 chr1 161070657 161070969 -36124463 + ORR1A2 LTR MaLR 1 327 0 1 1813 278 338 0 0 chr1 161071221 161071298 -36124134 - MER63D DNA AcHobo -695 366 290 1 1813 201 39 0 0 chr1 161071849 161071875 -36123557 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1813 258 32 0 0 chr1 161071904 161071935 -36123497 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1813 3199 43 8 8 chr1 161071985 161072381 -36123051 - MTA_Mm LTR MaLR 0 396 1 1 1813 8668 50 6 2 chr1 161072381 161073474 -36121958 - MTA_Mm-int LTR MaLR 0 1098 1 1 1813 4020 42 0 2 chr1 161073476 161073952 -36121480 - MT2C_Mm LTR ERVL 0 475 1 1 1813 1477 140 0 5 chr1 161074142 161074364 -36121068 + URR1A DNA MER1_type 1 221 -5 1 1813 1355 269 64 17 chr1 161074659 161075003 -36120429 + MTE2a LTR MaLR 18 377 -2 1 1813 635 304 38 57 chr1 161076038 161076303 -36119129 - MLT1K LTR MaLR -2 593 334 1 1813 7284 82 28 2 chr1 161076406 161077976 -36117456 - L1_Mus3 LINE L1 0 6638 5030 1 1813 193 265 181 0 chr1 161078297 161078380 -36117052 + MER5B DNA MER1_type 75 172 -6 1 1813 1559 128 59 19 chr1 161079374 161079644 -36115788 - Lx LINE L1 -15 6639 6359 1 1813 1475 127 59 104 chr1 161079652 161080108 -36115324 - RLTR9F LTR ERVK -6 397 1 1 1813 1736 208 19 76 chr1 161080137 161080569 -36114863 - MTB_Mm LTR MaLR 0 407 1 1 1813 408 257 86 103 chr1 161081403 161081637 -36113795 - L1MEg LINE L1 -4526 1699 1470 1 1813 419 274 20 0 chr1 161081685 161081787 -36113645 + B1_Mur1 SINE Alu 1 104 -45 1 1813 807 40 0 0 chr1 161081797 161081896 -36113536 + (TTTTC)n Simple_repeat Simple_repeat 2 100 0 1 1813 1093 58 0 7 chr1 161081896 161082034 -36113398 - B1_Mm SINE Alu -9 138 2 1 1813 391 305 143 36 chr1 161082091 161082510 -36112922 - L1MEg LINE L1 -4822 1403 911 1 1813 1362 166 57 68 chr1 161082530 161082866 -36112566 - Lx7 LINE L1 0 7696 7365 1 1813 599 200 14 0 chr1 161082871 161082998 -36112434 + GA-rich Low_complexity Low_complexity 1 129 0 1 1813 531 31 0 0 chr1 161082998 161083063 -36112369 + (GGAAA)n Simple_repeat Simple_repeat 1 65 0 1 1813 599 200 14 0 chr1 161083063 161083075 -36112357 + polypurine Low_complexity Low_complexity 130 141 0 1 1813 2753 165 138 33 chr1 161083089 161083323 -36112109 - Lx7 LINE L1 -337 7359 7125 1 1813 2433 77 0 64 chr1 161083323 161083668 -36111764 - ORR1A2 LTR MaLR 0 327 5 1 1813 2753 165 138 33 chr1 161083668 161084073 -36111359 - Lx7 LINE L1 -572 7124 6653 1 1813 1100 169 0 68 chr1 161084072 161084294 -36111138 - Lx7 LINE L1 -1235 6461 6255 1 1813 270 0 0 0 chr1 161084378 161084408 -36111024 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1813 339 25 0 0 chr1 161084408 161084447 -36110985 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1813 279 294 31 8 chr1 161084486 161084613 -36110819 - L1MEg LINE L1 -5388 731 602 1 1813 228 242 48 40 chr1 161084840 161084965 -36110467 + L1M3a LINE L1 1006 1131 -4936 1 1813 1971 265 149 26 chr1 161084936 161086096 -36109336 + L1M3a LINE L1 3281 4583 -1560 1 1813 180 0 0 0 chr1 161086274 161086294 -36109138 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1813 322 337 45 40 chr1 161086380 161086556 -36108876 - MLT1L LTR MaLR -164 446 270 1 1813 256 316 93 34 chr1 161087038 161087156 -36108276 + PB1 SINE Alu 1 125 -2 1 1813 945 149 0 0 chr1 161087322 161087483 -36107949 + (GGA)n Simple_repeat Simple_repeat 2 162 0 1 1814 281 352 35 18 chr1 161088477 161088606 -36106826 + MIR SINE MIR 8 138 -130 1 1814 264 158 0 0 chr1 161089474 161089531 -36105901 + CT-rich Low_complexity Low_complexity 2 58 0 1 1814 378 241 25 67 chr1 161089760 161089880 -36105552 - MLT1A1 LTR MaLR -290 118 4 1 1814 255 265 54 100 chr1 161089929 161090059 -36105373 - RLTR25B LTR ERVK -461 567 444 1 1814 625 207 43 8 chr1 161089964 161090081 -36105351 - B1_Mur1 SINE Alu -11 138 18 1 1814 1168 75 0 0 chr1 161090101 161090248 -36105184 + B1_Mus1 SINE Alu 2 148 0 1 1814 198 0 0 0 chr1 161090248 161090270 -36105162 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1814 2129 144 77 81 chr1 161090279 161090771 -36104661 + Lx LINE L1 6152 6641 -13 1 1814 1459 158 21 4 chr1 161090834 161091075 -36104357 + ORR1A1 LTR MaLR 1 245 -101 1 1814 676 107 9 9 chr1 161092179 161092292 -36103140 + (TCC)n Simple_repeat Simple_repeat 3 115 0 1 1814 1408 214 48 147 chr1 161094597 161094678 -36100754 + ORR1B2 LTR MaLR 1 54 -340 1 1814 1225 69 56 17 chr1 161094678 161094856 -36100576 + B2_Mm2 SINE B2 1 185 -10 1 1814 1428 199 59 40 chr1 161094856 161095211 -36100221 + ORR1B2 LTR MaLR 44 394 0 1 1814 294 179 0 0 chr1 161095789 161095845 -36099587 + CT-rich Low_complexity Low_complexity 2 57 0 1 1814 21 0 0 0 chr1 161096492 161096513 -36098919 + AT_rich Low_complexity Low_complexity 1 21 0 1 1814 181 321 19 0 chr1 161096629 161096682 -36098750 + L2 LINE L2 2685 2738 -681 1 1814 611 133 9 0 chr1 161096882 161096987 -36098445 + (TC)n Simple_repeat Simple_repeat 2 107 0 1 1814 210 154 0 0 chr1 161097016 161097055 -36098377 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 1814 975 280 41 79 chr1 161097560 161097952 -36097480 - MTE2b LTR MaLR -2 377 1 1 1814 620 215 29 7 chr1 161098080 161098216 -36097216 - B1_Mur1 SINE Alu -9 140 2 1 1814 954 264 38 19 chr1 161098846 161099058 -36096374 - B4 SINE B4 -73 219 4 1 1814 247 322 23 11 chr1 161100037 161100125 -36095307 + MLT1A LTR MaLR 4 92 -282 1 1814 366 127 0 0 chr1 161100191 161100262 -36095170 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1814 506 285 0 8 chr1 161100307 161100431 -36095001 + MTC LTR MaLR 291 413 -8 1 1814 392 338 75 10 chr1 161100434 161100634 -36094798 + L2a LINE L2 3213 3425 -1 1 1814 223 301 114 14 chr1 161101090 161101261 -36094171 - MIR SINE MIR -14 262 62 1 1814 1394 138 4 13 chr1 161101720 161101948 -36093484 - URR1A DNA MER1_type 0 226 1 1 1814 393 152 13 0 chr1 161102060 161102139 -36093293 + L1VL1 LINE L1 187 266 -6156 1 1814 22327 79 72 14 chr1 161102139 161106324 -36089108 + L1Md_F LINE L1 480 4906 -977 1 1814 1198 35 28 0 chr1 161106487 161106631 -36088801 + B1_Mus1 SINE Alu 1 148 0 1 1814 212 0 36 0 chr1 161106635 161106663 -36088769 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1814 282 250 0 0 chr1 161106797 161106857 -36088575 + RMER15 LTR ERVL 1 60 -515 1 1814 2382 217 23 57 chr1 161106907 161107473 -36087959 + RMER15 LTR ERVL 27 573 -2 1 1814 818 274 5 21 chr1 161107548 161107742 -36087690 - B3 SINE B2 -20 196 6 1 1814 315 330 42 140 chr1 161108386 161108693 -36086739 + ORR1E LTR MaLR 83 359 0 1 1814 686 288 81 73 chr1 161109229 161109476 -36085956 + LTR41 LTR ERVL 1 249 -519 1 1814 920 38 8 8 chr1 161109583 161109716 -36085716 + L1Md_F3 LINE L1 6451 6583 -1 1 1814 817 249 87 120 chr1 161110284 161110685 -36084747 + MLT1B LTR MaLR 1 388 -2 1 1814 443 271 0 10 chr1 161111536 161111633 -36083799 + PB1D10 SINE Alu 21 116 -1 1 1814 565 80 23 0 chr1 161111694 161111782 -36083650 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 1 1814 13699 74 11 11 chr1 161112665 161115478 -36079954 + L1VL2 LINE L1 176 2988 -627 1 1814 25 0 0 0 chr1 161115545 161115570 -36079862 + AT_rich Low_complexity Low_complexity 1 25 0 1 1814 263 290 0 16 chr1 161115599 161115662 -36079770 + B3 SINE B2 7 68 -148 1 1814 564 15 0 0 chr1 161115664 161115729 -36079703 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1 1814 864 168 22 22 chr1 161115859 161116042 -36079390 - B2_Mm2 SINE B2 -10 185 3 1 1814 222 37 0 0 chr1 161116656 161116683 -36078749 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1814 728 217 7 21 chr1 161117733 161117874 -36077558 - B3 SINE B2 -77 139 1 1 1814 506 349 7 19 chr1 161118806 161118961 -36076471 - RSINE1 SINE B4 0 165 13 1 1814 317 366 8 8 chr1 161119125 161119257 -36076175 + ID_B1 SINE B4 68 199 -25 1 1814 330 315 114 53 chr1 161119441 161119669 -36075763 + L1M5 LINE L1 4477 4718 -1428 2 1814 2680 153 31 0 chr1 161119669 161120126 -36075306 + Lx3A LINE L1 6503 6973 -8 2 1814 1218 48 0 7 chr1 161120156 161120304 -36075128 + B1_Mm SINE Alu 1 147 0 2 1814 215 31 0 30 chr1 161120305 161120338 -36075094 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1814 1380 91 5 0 chr1 161120617 161120803 -36074629 + B2_Mm1t SINE B2 1 187 -6 2 1814 342 98 0 0 chr1 161120900 161120951 -36074481 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1814 242 222 95 0 chr1 161120959 161121022 -36074410 - B1F SINE Alu 0 149 81 2 1814 394 263 127 0 chr1 161120966 161121084 -36074348 - ID_B1 SINE B4 -8 216 84 2 1814 322 308 21 76 chr1 161121086 161121230 -36074202 - B1F SINE Alu -13 136 1 2 1814 526 265 158 15 chr1 161121242 161121445 -36073987 - Arthur1B DNA Tip100 -993 232 1 2 1814 4753 140 89 6 chr1 161123121 161123766 -36071666 + RMER19B LTR ERVK 1 692 -210 2 1814 414 0 0 0 chr1 161123766 161123812 -36071620 + (CTG)n Simple_repeat Simple_repeat 1 46 0 2 1814 4753 140 89 6 chr1 161123812 161123988 -36071444 + RMER19B LTR ERVK 693 889 -13 2 1814 1058 128 17 50 chr1 161124736 161124917 -36070515 + MTC LTR MaLR 36 210 -211 2 1814 1320 108 16 0 chr1 161124917 161125102 -36070330 + B2_Mm2 SINE B2 2 189 -6 2 1814 322 270 32 122 chr1 161125102 161125124 -36070308 + MTC LTR MaLR 172 193 -186 2 1814 180 111 0 0 chr1 161125201 161125228 -36070204 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 2 1814 1152 184 29 0 chr1 161125228 161125435 -36069997 + MTC LTR MaLR 197 409 -12 2 1814 201 74 0 0 chr1 161125653 161125680 -36069752 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1814 407 222 0 47 chr1 161126689 161126774 -36068658 + RSINE1 SINE B4 42 122 -43 2 1814 469 99 0 38 chr1 161126776 161126881 -36068551 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 2 1814 288 53 0 0 chr1 161126883 161126921 -36068511 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1814 3209 128 154 15 chr1 161126922 161127525 -36067907 - RMER6C LTR ERVK -3 687 1 2 1814 1159 270 60 43 chr1 161127525 161128159 -36067273 + L1M2 LINE L1 4617 5261 -882 2 1814 1135 283 27 13 chr1 161128348 161128720 -36066712 - MTEa LTR MaLR 0 379 3 2 1814 199 284 84 24 chr1 161128951 161129034 -36066398 + L2 LINE L2 2801 2888 -531 2 1814 201 162 0 0 chr1 161129077 161129114 -36066318 + T-rich Low_complexity Low_complexity 2 38 0 2 1814 218 56 28 0 chr1 161129340 161129376 -36066056 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 2 1814 1067 120 0 43 chr1 161129498 161129667 -36065765 + B2_Mm2 SINE B2 2 164 -29 2 1814 180 0 0 0 chr1 161129667 161129687 -36065745 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 2 1814 903 210 0 51 chr1 161129687 161129713 -36065719 + B2_Mm1t SINE B2 165 187 -6 2 1814 326 286 73 32 chr1 161129917 161130040 -36065392 + L1M4b LINE L1 2300 2427 -4907 2 1814 225 308 30 15 chr1 161130724 161130790 -36064642 + tRNA-Ala-GCY_ tRNA tRNA 3 69 -6 2 1814 291 276 22 22 chr1 161130731 161130820 -36064612 + BC1_Mm scRNA scRNA 15 103 -49 2 1814 1172 261 93 71 chr1 161130845 161131746 -36063686 + L1M4b LINE L1 4337 5257 -1746 2 1814 293 326 22 11 chr1 161131762 161131852 -36063580 + RSINE1 SINE B4 6 96 -69 2 1814 341 58 0 19 chr1 161131857 161131910 -36063522 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1814 1125 216 187 29 chr1 161131912 161132227 -36063205 + MTEa LTR MaLR 15 379 0 2 1814 360 276 14 95 chr1 161132404 161132651 -36062781 + L1VL1 LINE L1 45 392 -6030 2 1814 304 286 15 15 chr1 161132709 161132844 -36062588 + L1_Mus1 LINE L1 675 809 -5807 2 1814 28106 109 28 32 chr1 161132846 161137411 -36058021 + L1_Mus1 LINE L1 725 5302 -581 2 1814 1078 82 7 0 chr1 161137411 161137557 -36057875 + B1_Mus2 SINE Alu 1 147 0 2 1814 28106 75 21 4 chr1 161137557 161138849 -36056583 + L1_Mus1 LINE L1 5303 6567 0 2 1814 1115 83 7 0 chr1 161138856 161139000 -36056432 + B1_Mus2 SINE Alu 2 146 -1 2 1814 432 289 98 43 chr1 161139000 161139163 -36056269 + L1M2 LINE L1 5102 5273 -870 2 1814 1192 114 17 0 chr1 161139996 161140172 -36055260 + B2_Mm1t SINE B2 1 179 -14 2 1814 352 98 386 20 chr1 161140185 161140286 -36055146 + B2_Mm2 SINE B2 47 184 -11 2 1814 338 152 17 51 chr1 161140655 161140758 -36054674 + GA-rich Low_complexity Low_complexity 3 101 0 2 1814 1018 125 6 6 chr1 161140758 161140935 -36054497 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1814 338 152 17 51 chr1 161140935 161140949 -36054483 + polypurine Low_complexity Low_complexity 102 115 0 2 1814 291 266 101 0 chr1 161141270 161141349 -36054083 - PB1D9 SINE Alu -5 115 29 2 1814 399 326 123 43 chr1 161141378 161141801 -36053631 - L1M4b LINE L1 -6248 1086 630 2 1814 801 316 43 57 chr1 161142191 161142560 -36052872 - RMER5 LTR ERV1 -15 519 156 2 1814 416 274 102 8 chr1 161142573 161142691 -36052741 + RSINE1 SINE B4 4 132 -33 2 1814 229 324 38 63 chr1 161142783 161142862 -36052570 + B1F2 SINE Alu 9 85 -64 2 1814 753 232 20 7 chr1 161142843 161142995 -36052437 - B3A SINE B2 -44 154 1 2 1814 2265 227 123 16 chr1 161142995 161143635 -36051797 + Lx6 LINE L1 6748 7456 -4 2 1814 29 0 0 0 chr1 161143635 161143664 -36051768 + AT_rich Low_complexity Low_complexity 1 29 0 2 1814 1448 183 120 10 chr1 161143876 161144052 -36051380 - ORR1D1 LTR MaLR 0 374 182 2 1814 498 33 0 0 chr1 161144052 161144112 -36051320 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1814 1448 183 120 10 chr1 161144112 161144244 -36051188 - ORR1D1 LTR MaLR -193 181 34 2 1814 329 0 24 0 chr1 161144246 161144287 -36051145 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2 1814 1789 184 134 5 chr1 161144288 161144714 -36050718 - Lx5 LINE L1 -3 7047 6567 2 1814 25 31 0 0 chr1 161144895 161144927 -36050505 + AT_rich Low_complexity Low_complexity 1 32 0 2 1814 30 45 0 0 chr1 161144998 161145042 -36050390 + AT_rich Low_complexity Low_complexity 1 44 0 2 1814 7350 83 22 2 chr1 161145503 161146430 -36049002 + Lx LINE L1 5587 6518 -136 2 1814 189 0 0 0 chr1 161146430 161146451 -36048981 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 2 1814 7350 83 22 2 chr1 161146451 161146570 -36048862 + Lx LINE L1 6519 6653 -1 2 1814 347 297 55 67 chr1 161146968 161147206 -36048226 + MER92B LTR ERV1 397 631 -5 2 1814 267 353 131 41 chr1 161147302 161147547 -36047885 + MLT1H LTR MaLR 280 546 -3 2 1814 191 250 157 11 chr1 161147993 161148082 -36047350 - L2c LINE L2 -40 3347 3246 2 1814 697 274 76 118 chr1 161148958 161149167 -36046265 - MLT1B LTR MaLR 0 390 177 2 1814 294 20 59 20 chr1 161149167 161149218 -36046214 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2 1814 697 274 76 118 chr1 161149218 161149323 -36046109 - MLT1B LTR MaLR -214 176 95 2 1814 1267 247 45 55 chr1 161149323 161149704 -36045728 - MTEa LTR MaLR 0 379 3 2 1814 697 274 76 118 chr1 161149704 161149785 -36045647 - MLT1B LTR MaLR -296 94 11 2 1814 26 0 0 0 chr1 161150332 161150358 -36045074 + AT_rich Low_complexity Low_complexity 1 26 0 2 1814 261 0 0 0 chr1 161150398 161150427 -36045005 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 2 1814 351 0 0 0 chr1 161150427 161150465 -36044967 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1814 672 316 23 79 chr1 161150465 161150730 -36044702 - B4A SINE B4 -23 269 20 2 1814 1388 169 166 53 chr1 161151024 161151404 -36044028 - RMER6A LTR ERVK -333 423 1 2 1814 437 279 15 18 chr1 161151491 161151683 -36043749 - L1MC2 LINE L1 -199 6145 5952 2 1814 765 257 119 34 chr1 161152960 161153339 -36042093 + RLTR12B LTR ERVK 76 486 -42 2 1814 295 326 103 7 chr1 161155054 161155190 -36040242 - B1_Mur2 SINE Alu 0 149 1 2 1814 474 18 0 0 chr1 161155515 161155570 -36039862 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1814 371 276 48 0 chr1 161156068 161156173 -36039259 + MER5A DNA MER1_type 35 144 -45 2 1814 1197 126 13 15 chr1 161156450 161156634 -36038798 + ORR1A2 LTR MaLR 17 214 -156 2 1814 991 179 39 62 chr1 161156634 161156857 -36038575 + RMER2 LTR ERV1 1 217 -350 2 1814 690 106 26 9 chr1 161156857 161156971 -36038461 - RMER2 LTR ERV1 0 567 452 2 1814 520 27 82 0 chr1 161156977 161157050 -36038382 + RMER2 LTR ERV1 489 567 0 2 1814 988 131 52 2 chr1 161157050 161157193 -36038239 + ORR1A2 LTR MaLR 211 369 -15 2 1814 10192 140 72 26 chr1 161157196 161159071 -36036361 + ORR1A2-int LTR MaLR 3 1963 0 2 1814 2185 98 31 12 chr1 161159071 161159392 -36036040 + ORR1A2 LTR MaLR 1 327 0 2 1814 3871 45 29 4 chr1 161161236 161161786 -36033646 + LTRIS3 LTR ERV1 1 564 0 2 1814 24 32 0 0 chr1 161162234 161162265 -36033167 + GC_rich Low_complexity Low_complexity 1 31 0 2 1814 271 258 13 32 chr1 161162671 161162827 -36032605 + (CGG)n Simple_repeat Simple_repeat 1 153 0 2 1814 180 0 0 0 chr1 161164218 161164238 -36031194 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 1814 854 143 8 0 chr1 161164238 161164371 -36031061 - B1_Mus1 SINE Alu -12 136 3 2 1814 988 265 82 51 chr1 161164658 161165048 -36030384 - MTD LTR MaLR 0 419 18 2 1814 878 213 54 5 chr1 161165138 161165341 -36030091 + B3 SINE B2 3 215 -1 2 1814 469 84 28 0 chr1 161165718 161165789 -36029643 - B1_Mus2 SINE Alu 0 147 75 2 1814 411 125 0 0 chr1 161166661 161166733 -36028699 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1814 251 209 0 0 chr1 161167068 161167111 -36028321 + ID4_ SINE ID 30 72 -11 2 1814 218 203 0 30 chr1 161167120 161167172 -36028260 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2 1814 204 40 0 0 chr1 161167172 161167197 -36028235 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1814 218 203 0 30 chr1 161167197 161167210 -36028222 + (TATG)n Simple_repeat Simple_repeat 1 13 0 2 1814 1408 74 16 10 chr1 161167248 161167440 -36027992 - B2_Mm2 SINE B2 -1 194 2 2 1814 476 359 65 36 chr1 161168029 161168385 -36027047 + Kanga1b DNA Tc2 111 476 -303 2 1814 279 329 108 14 chr1 161168398 161168546 -36026886 + RSINE1 SINE B4 2 163 -2 2 1814 373 191 39 128 chr1 161168561 161168663 -36026769 + PB1D9 SINE Alu 14 106 -14 2 1814 290 184 20 0 chr1 161168716 161168765 -36026667 + B4A SINE B4 6 55 -237 2 1814 714 182 37 22 chr1 161168765 161168900 -36026532 - B1_Mur1 SINE Alu -11 138 2 2 1814 33 0 0 0 chr1 161168904 161168937 -36026495 + AT_rich Low_complexity Low_complexity 1 33 0 2 1814 896 308 63 2 chr1 161170147 161170573 -36024859 - L1MB2 LINE L1 -26 6145 5694 2 1814 993 299 25 46 chr1 161170573 161170928 -36024504 - ORR1D2 LTR MaLR 0 370 1 3 1814 774 325 33 27 chr1 161171000 161171300 -36024132 - MER21B LTR ERV1 -369 494 193 3 1814 1567 41 0 5 chr1 161171785 161171979 -36023453 - B2_Mm1a SINE B2 0 193 1 3 1814 790 343 84 51 chr1 161172179 161172763 -36022669 - Lx8 LINE L1 0 7473 6871 3 1814 325 324 0 67 chr1 161173686 161173805 -36021627 + RSINE1 SINE B4 43 153 -12 3 1814 213 192 54 14 chr1 161173874 161173948 -36021484 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1814 244 289 59 49 chr1 161175414 161175516 -36019916 + PB1D10 SINE Alu 1 108 -9 3 1814 736 331 40 24 chr1 161175751 161176048 -36019384 + MER21B LTR ERV1 193 494 -369 3 1814 303 337 0 21 chr1 161176554 161176651 -36018781 + PB1D10 SINE Alu 6 100 -17 3 1814 348 304 7 15 chr1 161176657 161176794 -36018638 + CT-rich Low_complexity Low_complexity 1 136 0 3 1814 235 308 95 71 chr1 161176804 161176824 -36018608 - MIR SINE MIR -34 228 209 3 1814 378 0 0 0 chr1 161176824 161176866 -36018566 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1814 1143 44 0 0 chr1 161176866 161177003 -36018429 - B1_Mm SINE Alu -10 137 1 3 1814 235 308 95 71 chr1 161177003 161177107 -36018325 - MIR SINE MIR -54 208 101 3 1814 221 403 14 0 chr1 161177315 161177387 -36018045 - PB1D10 SINE Alu -44 73 1 3 1814 22 35 0 0 chr1 161177667 161177696 -36017736 + AT_rich Low_complexity Low_complexity 1 29 0 3 1814 239 212 61 24 chr1 161177725 161177807 -36017625 - B3A SINE B2 -98 100 16 3 1814 257 209 29 43 chr1 161178732 161178802 -36016630 + PB1D10 SINE Alu 48 116 -1 3 1814 233 353 123 13 chr1 161178816 161178971 -36016461 - MLT1L LTR MaLR -403 207 36 3 1814 284 333 24 12 chr1 161179447 161179529 -36015903 - ID SINE ID -140 84 2 3 1814 225 284 120 68 chr1 161180633 161180750 -36014682 + RSINE1 SINE B4 3 125 -40 3 1814 579 40 0 0 chr1 161180750 161180824 -36014608 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1814 312 27 0 0 chr1 161180824 161180860 -36014572 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1814 357 43 0 0 chr1 161181186 161181233 -36014199 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1814 405 248 90 8 chr1 161181349 161181471 -36013961 - Lx8 LINE L1 -326 7147 7016 3 1814 260 207 0 0 chr1 161181803 161181861 -36013571 + T-rich Low_complexity Low_complexity 3 60 0 3 1814 1169 35 21 0 chr1 161181862 161182007 -36013425 - B1_Mus1 SINE Alu 0 148 1 3 1814 22 35 0 0 chr1 161182816 161182845 -36012587 + AT_rich Low_complexity Low_complexity 1 29 0 3 1814 641 101 10 0 chr1 161182858 161182957 -36012475 + (TTCTC)n Simple_repeat Simple_repeat 3 102 0 3 1814 1180 42 7 0 chr1 161182958 161183101 -36012331 - B1_Mus1 SINE Alu -4 144 1 3 1814 380 318 0 70 chr1 161183190 161183305 -36012127 - PB1D9 SINE Alu -13 107 1 3 1814 40 37 0 0 chr1 161183780 161183834 -36011598 + AT_rich Low_complexity Low_complexity 1 54 0 3 1814 1171 35 21 0 chr1 161184201 161184345 -36011087 - B1_Mm SINE Alu 0 147 1 3 1814 781 202 98 5 chr1 161184353 161184547 -36010885 - B3 SINE B2 -3 213 2 3 1814 200 128 26 0 chr1 161184608 161184647 -36010785 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1814 295 350 90 51 chr1 161185136 161185392 -36010040 - LTR40a LTR ERVL -13 506 241 3 1814 22 35 0 0 chr1 161185800 161185829 -36009603 + AT_rich Low_complexity Low_complexity 1 29 0 3 1814 239 321 64 9 chr1 161186015 161186125 -36009307 - RSINE1 SINE B4 -28 137 22 3 1814 1597 203 108 42 chr1 161186823 161187013 -36008419 - MTD LTR MaLR -13 406 196 3 1814 318 36 54 0 chr1 161187013 161187069 -36008363 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 1814 1597 203 108 42 chr1 161187069 161187259 -36008173 - MTD LTR MaLR -224 195 1 3 1814 259 328 76 68 chr1 161187314 161187684 -36007748 - L1M5 LINE L1 -481 5759 5387 3 1814 1663 263 111 19 chr1 161187913 161188897 -36006535 - L1M5 LINE L1 -1030 5116 4007 3 1814 219 49 22 89 chr1 161188897 161188942 -36006490 + T-rich Low_complexity Low_complexity 2 43 0 3 1814 201 265 20 0 chr1 161189297 161189346 -36006086 + CT-rich Low_complexity Low_complexity 2 51 0 3 1814 878 166 7 0 chr1 161189347 161189486 -36005946 - B1_Mur3 SINE Alu -9 140 1 3 1814 343 314 102 35 chr1 161189784 161190038 -36005394 - L1MC LINE L1 -2764 3382 3112 3 1814 498 266 40 8 chr1 161190278 161190403 -36005029 - B1F1 SINE Alu -6 143 15 3 1814 244 212 152 0 chr1 161190546 161190612 -36004820 - ID4_ SINE ID -3 80 5 3 1814 618 294 67 64 chr1 161190856 161191082 -36004350 - L1M2 LINE L1 -1180 4963 4746 3 1814 1179 55 0 0 chr1 161191082 161191228 -36004204 - B1_Mus2 SINE Alu 0 147 2 3 1814 618 294 67 64 chr1 161191228 161191550 -36003882 - L1M2 LINE L1 -1398 4745 4413 3 1814 201 229 0 0 chr1 161191722 161191770 -36003662 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1814 437 240 170 0 chr1 161191820 161191920 -36003512 - B4 SINE B4 -91 201 85 3 1814 427 229 117 17 chr1 161192116 161192236 -36003196 - RSINE1 SINE B4 -30 135 4 3 1814 345 283 95 26 chr1 161192304 161192420 -36003012 - ID_B1 SINE B4 -5 219 96 3 1814 533 286 31 66 chr1 161192536 161192764 -36002668 - B4A SINE B4 0 292 73 3 1814 232 245 0 0 chr1 161192876 161192925 -36002507 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 1814 23 68 0 0 chr1 161193309 161193353 -36002079 + AT_rich Low_complexity Low_complexity 1 44 0 3 1814 683 241 108 0 chr1 161193890 161194048 -36001384 - B3 SINE B2 -6 210 36 3 1814 218 336 45 67 chr1 161195325 161195459 -35999973 + MIR SINE MIR 1 131 -131 3 1814 882 275 31 101 chr1 161195682 161196206 -35999226 - RLTR11B LTR ERVK -4 524 1 3 1814 21 89 0 0 chr1 161197250 161197306 -35998126 + AT_rich Low_complexity Low_complexity 1 56 0 3 1814 262 88 35 0 chr1 161198445 161198457 -35996975 + (TTTG)n Simple_repeat Simple_repeat 1 12 0 3 1814 1208 34 7 0 chr1 161198457 161198603 -35996829 - B1_Mm SINE Alu 0 147 1 3 1814 262 88 35 0 chr1 161198603 161198647 -35996785 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3 1814 379 266 41 31 chr1 161198810 161198907 -35996525 + PB1D9 SINE Alu 15 112 -8 3 1814 183 42 0 0 chr1 161199033 161199057 -35996375 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 3 1814 255 366 98 10 chr1 161199204 161199306 -35996126 - PB1 SINE Alu -11 116 6 3 1814 366 315 62 23 chr1 161199303 161199433 -35995999 + B1F SINE Alu 15 149 0 3 1814 193 130 74 0 chr1 161199808 161199862 -35995570 + T-rich Low_complexity Low_complexity 3 60 0 3 1814 354 183 22 109 chr1 161200457 161200549 -35994883 + PB1D9 SINE Alu 37 120 0 3 1814 22 56 0 0 chr1 161200800 161200836 -35994596 + AT_rich Low_complexity Low_complexity 1 36 0 3 1814 201 132 0 0 chr1 161200836 161200874 -35994558 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1814 2253 117 3 6 chr1 161200958 161201286 -35994146 - ORR1A2 LTR MaLR 0 327 1 3 1814 297 253 0 75 chr1 161201286 161201364 -35994068 - B4A SINE B4 -42 250 180 3 1814 1147 92 52 0 chr1 161201364 161201537 -35993895 + B2_Mm2 SINE B2 3 184 -11 3 1814 1056 152 11 33 chr1 161201597 161201780 -35993652 - ORR1C2 LTR MaLR -1 383 205 3 1814 3326 150 106 27 chr1 161201795 161202426 -35993006 - RMER1B Other Other -9 1057 377 3 1814 330 282 73 0 chr1 161202551 161202661 -35992771 - ORR1C2 LTR MaLR -249 118 1 3 1814 22 80 0 0 chr1 161203634 161203684 -35991748 + AT_rich Low_complexity Low_complexity 1 50 0 3 1814 186 43 0 0 chr1 161203850 161203873 -35991559 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1814 22 35 0 0 chr1 161204963 161204992 -35990440 + AT_rich Low_complexity Low_complexity 1 29 0 3 1814 212 0 36 0 chr1 161205372 161205400 -35990032 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1814 195 42 0 0 chr1 161206571 161206595 -35988837 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3 1814 530 156 0 18 chr1 161206595 161206699 -35988733 - Lx LINE L1 -12 6969 6866 3 1814 4327 127 7 33 chr1 161208602 161209292 -35986140 - Lx LINE L1 -63 6591 5920 3 1814 373 330 39 17 chr1 161209316 161209495 -35985937 - RMER5 LTR ERV1 -113 421 239 3 1814 1465 54 38 0 chr1 161210088 161210273 -35985159 + B2_Mm1t SINE B2 1 192 -1 3 1814 622 310 50 56 chr1 161210320 161210518 -35984914 + B3A SINE B2 2 198 0 3 1814 516 16 0 0 chr1 161210874 161210935 -35984497 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1814 395 291 27 18 chr1 161210957 161211069 -35984363 - B1F SINE Alu -26 123 11 3 1814 230 309 0 18 chr1 161211022 161211078 -35984354 - ID_B1 SINE B4 -87 137 83 3 1814 246 321 71 0 chr1 161211518 161211602 -35983830 + PB1D9 SINE Alu 18 107 -13 3 1814 256 308 0 0 chr1 161211639 161211717 -35983715 - L1M5 LINE L1 -1533 4613 4536 3 1814 422 249 279 0 chr1 161212564 161212772 -35982660 - Lx9 LINE L1 -9 7635 7370 3 1814 410 302 8 30 chr1 161212813 161212946 -35982486 - MTEb LTR MaLR -15 364 235 3 1814 601 275 37 47 chr1 161212941 161213013 -35982419 - B4 SINE B4 -68 224 158 3 1814 3292 57 47 42 chr1 161213013 161213185 -35982247 - MT2C_Mm LTR ERVL 0 475 305 3 1814 627 14 0 0 chr1 161213185 161213257 -35982175 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1814 3292 57 47 42 chr1 161213257 161213557 -35981875 - MT2C_Mm LTR ERVL -171 304 1 3 1814 601 275 37 47 chr1 161213557 161213675 -35981757 - B4 SINE B4 -135 157 36 3 1814 263 320 79 10 chr1 161213731 161213832 -35981600 - Charlie1a DNA MER1_type -1071 384 277 3 1814 285 337 0 0 chr1 161214079 161214248 -35981184 + T-rich Low_complexity Low_complexity 1 169 0 3 1814 804 211 4 98 chr1 161214250 161214486 -35980946 - ID_B1 SINE B4 0 224 11 3 1814 23 33 0 0 chr1 161214573 161214603 -35980829 + AT_rich Low_complexity Low_complexity 1 30 0 3 1814 634 259 97 11 chr1 161215520 161215696 -35979736 + B3A SINE B2 2 192 -6 3 1814 22 56 0 0 chr1 161215880 161215916 -35979516 + AT_rich Low_complexity Low_complexity 1 36 0 3 1814 446 312 111 56 chr1 161215957 161216137 -35979295 + ID_B1 SINE B4 5 194 -30 4 1814 713 206 122 21 chr1 161217069 161217258 -35978174 - B3 SINE B2 -5 211 4 4 1814 2251 63 3 3 chr1 161217673 161217973 -35977459 - L1_Mus2 LINE L1 0 6566 6267 4 1814 23 54 0 0 chr1 161217990 161218027 -35977405 + AT_rich Low_complexity Low_complexity 1 37 0 4 1814 25 75 0 0 chr1 161218178 161218231 -35977201 + AT_rich Low_complexity Low_complexity 1 53 0 4 1815 32 57 0 0 chr1 161218918 161218971 -35976461 + AT_rich Low_complexity Low_complexity 1 53 0 4 1815 407 296 14 43 chr1 161219637 161219775 -35975657 + B4 SINE B4 1 134 -158 4 1815 239 355 26 13 chr1 161219802 161219879 -35975553 + B4A SINE B4 211 288 -4 4 1815 245 71 48 0 chr1 161219906 161219948 -35975484 + B1_Mus2 SINE Alu 104 147 0 4 1815 1373 68 6 0 chr1 161220734 161220911 -35974521 - B2_Mm1a SINE B2 -14 179 2 4 1815 377 211 173 9 chr1 161221050 161221160 -35974272 - URR1B DNA MER1_type 0 225 98 4 1815 657 171 0 0 chr1 161221608 161221710 -35973722 - ORR1B1 LTR MaLR 0 394 293 4 1815 9483 145 44 99 chr1 161221710 161223972 -35971460 + ORR1B1-int LTR MaLR 3 1963 0 4 1815 943 154 192 4 chr1 161224327 161224527 -35970905 + ORR1B1 LTR MaLR 112 394 0 4 1815 1309 152 9 18 chr1 161224680 161224907 -35970525 - URR1B DNA MER1_type 0 225 1 4 1815 354 323 108 0 chr1 161225264 161225422 -35970010 + Cheshire DNA MER1_type 5 179 -2241 4 1815 640 267 91 10 chr1 161225432 161225629 -35969803 - ID_B1 SINE B4 0 224 12 4 1815 3262 3 0 0 chr1 161225802 161226166 -35969266 - L1Md_A LINE L1 0 6582 6219 4 1815 1240 256 33 15 chr1 161227385 161227718 -35967714 + ORR1D2 LTR MaLR 1 339 -31 4 1815 212 77 26 0 chr1 161227719 161227758 -35967674 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1815 506 231 83 0 chr1 161229209 161229317 -35966115 + PB1D9 SINE Alu 1 117 -3 4 1815 293 287 307 0 chr1 161229347 161229448 -35965984 + ID_B1 SINE B4 84 215 -9 4 1815 286 330 62 35 chr1 161229448 161229459 -35965973 + PB1D10 SINE Alu 3 117 0 4 1815 23 0 0 0 chr1 161229823 161229846 -35965586 + AT_rich Low_complexity Low_complexity 1 23 0 4 1815 443 313 54 27 chr1 161230004 161230188 -35965244 + B3A SINE B2 9 197 -1 4 1815 414 292 92 40 chr1 161231434 161231662 -35963770 - Lx8 LINE L1 -3 7470 7231 4 1815 565 274 12 40 chr1 161231730 161231956 -35963476 - Lx8 LINE L1 -449 7024 6803 4 1815 254 324 37 91 chr1 161231969 161232156 -35963276 - Lx8 LINE L1 -813 6660 6484 4 1815 1245 180 76 29 chr1 161232156 161232465 -35962967 - ORR1B2 LTR MaLR 0 367 1 4 1815 377 266 0 0 chr1 161232465 161232559 -35962873 - Lx8 LINE L1 -985 6488 6395 4 1815 473 81 0 26 chr1 161232571 161232647 -35962785 + (TTTTC)n Simple_repeat Simple_repeat 3 76 0 4 1815 7951 60 1 0 chr1 161232654 161233830 -35961602 - L1_Mus1 LINE L1 0 6567 5391 4 1815 458 281 59 96 chr1 161233831 161234051 -35961381 - Lx8 LINE L1 -1074 6399 6188 4 1815 6397 67 1 1 chr1 161234056 161234874 -35960558 - L1_Mus1 LINE L1 0 6567 5750 4 1815 1695 225 71 13 chr1 161235180 161235576 -35959856 - MTD LTR MaLR 0 419 1 4 1815 183 80 0 0 chr1 161235605 161235630 -35959802 + (G)n Simple_repeat Simple_repeat 1 25 0 4 1815 328 345 65 29 chr1 161235631 161235801 -35959631 + MIR SINE MIR 11 186 -76 4 1815 258 347 0 47 chr1 161236522 161236628 -35958804 + ID4_ SINE ID 4 104 -48 4 1815 379 328 76 27 chr1 161237255 161237440 -35957992 - MIR SINE MIR -49 213 20 4 1815 189 333 0 0 chr1 161237786 161237840 -35957592 - MIRb SINE MIR -178 90 37 4 1815 28 86 0 0 chr1 161238667 161238737 -35956695 + AT_rich Low_complexity Low_complexity 1 70 0 4 1815 203 245 0 0 chr1 161238943 161238992 -35956440 + C-rich Low_complexity Low_complexity 5 53 0 4 1815 319 332 61 118 chr1 161239341 161239570 -35955862 - B3 SINE B2 0 216 1 4 1815 26 0 0 0 chr1 161239653 161239679 -35955753 + AT_rich Low_complexity Low_complexity 1 26 0 4 1815 32 57 0 0 chr1 161240377 161240430 -35955002 + AT_rich Low_complexity Low_complexity 1 53 0 4 1815 433 279 146 52 chr1 161240958 161241438 -35953994 - L1M3 LINE L1 -789 5351 4827 4 1815 263 75 55 36 chr1 161241486 161241541 -35953891 - B2_Mm2 SINE B2 -3 192 137 4 1815 1173 118 0 27 chr1 161241663 161241846 -35953586 - B2_Mm1t SINE B2 -14 179 2 4 1815 1205 48 0 0 chr1 161242071 161242218 -35953214 + B1_Mm SINE Alu 1 147 0 4 1815 350 290 54 5 chr1 161242277 161242473 -35952959 - L1M3 LINE L1 -3364 2782 2572 4 1815 414 69 0 0 chr1 161242725 161242783 -35952649 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 4 1815 679 258 54 21 chr1 161243206 161243392 -35952040 + B3A SINE B2 2 193 -5 4 1815 557 229 83 25 chr1 161243538 161243659 -35951773 - B1_Mus2 SINE Alu -15 132 5 4 1815 351 0 0 0 chr1 161243876 161243915 -35951517 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1815 377 311 52 7 chr1 161244032 161244168 -35951264 - MER58B DNA MER1_type -16 325 184 4 1815 23 0 0 0 chr1 161244408 161244431 -35951001 + AT_rich Low_complexity Low_complexity 1 23 0 4 1815 21 0 0 0 chr1 161244696 161244717 -35950715 + AT_rich Low_complexity Low_complexity 1 21 0 4 1815 394 341 90 29 chr1 161244833 161245144 -35950288 - Lx8 LINE L1 -132 7341 7012 4 1815 3034 57 5 3 chr1 161245545 161245934 -35949498 - L1Md_F2 LINE L1 -2 6580 6191 4 1815 516 277 64 35 chr1 161246013 161246215 -35949217 - MLT1C LTR MaLR 0 467 260 4 1815 324 0 0 0 chr1 161246215 161246251 -35949181 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1815 610 123 101 0 chr1 161246251 161246389 -35949043 - RMER17B LTR ERVK -495 463 312 4 1815 1035 89 0 33 chr1 161246645 161246796 -35948636 - B2_Mm2 SINE B2 -49 146 1 4 1815 1086 139 60 41 chr1 161246806 161247024 -35948408 - Lx LINE L1 0 6654 6433 4 1815 593 266 38 19 chr1 161247067 161247278 -35948154 - B3 SINE B2 0 216 2 4 1815 180 0 0 0 chr1 161247415 161247435 -35947997 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1815 581 115 0 10 chr1 161247741 161247838 -35947594 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1815 611 253 353 14 chr1 161248165 161248522 -35946910 - L1M3e LINE L1 -531 6729 6252 4 1815 278 268 73 0 chr1 161248578 161248701 -35946731 + L1M2 LINE L1 4268 4399 -1744 4 1815 820 253 108 52 chr1 161249139 161249464 -35945968 - Lx8 LINE L1 -318 7155 6813 4 1815 221 83 28 0 chr1 161251353 161251389 -35944043 + (GAA)n Simple_repeat Simple_repeat 3 39 0 4 1815 715 319 65 22 chr1 161252013 161252244 -35943188 + MTE2a LTR MaLR 41 281 -98 4 1815 677 233 53 5 chr1 161252337 161252544 -35942888 - L1M3e LINE L1 -2121 4982 4766 4 1815 469 283 30 59 chr1 161252633 161252802 -35942630 - RSINE1 SINE B4 0 165 2 4 1815 668 198 35 115 chr1 161252826 161253000 -35942432 - B3A SINE B2 0 198 36 4 1815 1078 258 164 27 chr1 161253010 161253718 -35941714 - L1M3e LINE L1 -3106 3997 3193 4 1815 295 246 67 80 chr1 161254821 161254971 -35940461 - L1M3e LINE L1 -6880 150 3 4 1815 1002 131 68 6 chr1 161256144 161256320 -35939112 - B2_Mm2 SINE B2 -8 187 1 4 1815 298 221 0 29 chr1 161256367 161256437 -35938995 + MIRc SINE MIR 91 158 -110 4 1815 886 47 165 0 chr1 161258021 161258148 -35937284 - B1_Mus1 SINE Alu 0 148 1 4 1815 329 309 20 20 chr1 161258573 161258672 -35936760 + PB1D10 SINE Alu 1 99 -18 4 1815 394 367 98 24 chr1 161259612 161259981 -35935451 + L1MEg LINE L1 381 776 -5308 4 1815 457 267 86 29 chr1 161260106 161260309 -35935123 + B4A SINE B4 30 277 -15 4 1815 290 214 20 119 chr1 161261113 161261214 -35934218 - L1MA7 LINE L1 -25 6266 6176 4 1815 2386 222 62 77 chr1 161261660 161261932 -35933500 - Lx5 LINE L1 -8 7042 6751 4 1815 279 0 0 0 chr1 161261932 161261963 -35933469 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1815 2386 222 62 77 chr1 161261963 161262352 -35933080 - Lx5 LINE L1 -300 6750 6391 4 1815 1133 219 9 13 chr1 161262344 161262575 -35932857 + Lx5 LINE L1 6142 6371 -679 4 1815 230 193 17 17 chr1 161262769 161262827 -35932605 - L1M2 LINE L1 -369 5931 5874 4 1815 268 258 216 24 chr1 161262826 161262993 -35932439 - L1M2 LINE L1 -1034 5109 4911 4 1815 2301 241 211 40 chr1 161263010 161264382 -35931050 + L1_Rod LINE L1 3710 5315 -532 4 1815 377 316 126 50 chr1 161264411 161264688 -35930744 + RMER1B Other Other 4 301 -765 4 1815 2705 80 12 10 chr1 161265492 161265894 -35929538 - BGLII LTR ERVK 0 421 19 4 1815 433 315 121 99 chr1 161266379 161266742 -35928690 - LTR31 LTR ERV1 -77 542 172 4 1815 281 330 11 11 chr1 161269130 161269225 -35926207 - MTEb LTR MaLR -4 375 281 4 1815 25 31 0 0 chr1 161269558 161269590 -35925842 + AT_rich Low_complexity Low_complexity 1 32 0 4 1815 183 42 0 0 chr1 161270636 161270660 -35924772 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1815 379 197 0 29 chr1 161271026 161271094 -35924338 + B1F SINE Alu 14 79 -70 4 1815 282 294 85 34 chr1 161271811 161271987 -35923445 - L1M5 LINE L1 -505 5659 5475 4 1815 211 146 0 24 chr1 161272360 161272402 -35923030 + T-rich Low_complexity Low_complexity 4 44 0 4 1815 277 340 25 25 chr1 161272554 161272714 -35922718 - RSINE1 SINE B4 -4 161 2 4 1815 993 215 34 0 chr1 161275345 161275554 -35919878 + B3 SINE B2 1 216 0 4 1815 502 275 20 66 chr1 161275875 161276027 -35919405 - MER58A DNA MER1_type -1 223 79 4 1815 903 252 20 10 chr1 161276698 161276902 -35918530 + B3 SINE B2 5 210 -6 4 1815 687 288 8 59 chr1 161277248 161277484 -35917948 - ID_B1 SINE B4 0 224 1 4 1815 284 352 37 9 chr1 161277768 161277877 -35917555 + B1F1 SINE Alu 1 112 -37 4 1815 898 311 108 24 chr1 161278887 161279425 -35916007 + L1MC3 LINE L1 7099 7681 -104 4 1815 857 178 107 30 chr1 161280517 161280714 -35914718 - B3 SINE B2 -2 214 3 4 1815 197 262 150 53 chr1 161281082 161281129 -35914303 - L2a LINE L2 -5 3421 3371 4 1815 619 298 151 10 chr1 161281129 161281427 -35914005 - MER58B DNA MER1_type 0 341 2 4 1815 197 262 150 53 chr1 161281427 161281492 -35913940 - L2a LINE L2 -56 3370 3298 4 1815 1464 204 132 22 chr1 161282531 161282901 -35912531 - MTD LTR MaLR 0 419 9 4 1815 221 310 74 128 chr1 161283537 161283685 -35911747 - L3 LINE CR1 -93 4396 4257 4 1815 576 317 87 49 chr1 161283719 161284064 -35911368 + ORR1E LTR MaLR 2 359 0 5 1815 1177 68 0 7 chr1 161284322 161284470 -35910962 + B1_Mus1 SINE Alu 2 148 0 5 1815 358 297 84 0 chr1 161285043 161285198 -35910234 + MER67C LTR ERV1 201 368 -343 5 1815 1370 61 11 16 chr1 161286495 161286679 -35908753 + B2_Mm1t SINE B2 5 187 -6 5 1815 226 218 0 52 chr1 161288363 161288421 -35907011 + PB1D9 SINE Alu 1 55 -65 5 1815 211 157 39 0 chr1 161288423 161288474 -35906958 + GA-rich Low_complexity Low_complexity 2 54 0 5 1815 818 83 8 0 chr1 161288554 161288674 -35906758 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 5 1815 2760 198 66 12 chr1 161289402 161289965 -35905467 - Lx6 LINE L1 -11 7449 6857 5 1815 2212 161 19 13 chr1 161290235 161290613 -35904819 - ORR1C2 LTR MaLR -4 380 1 5 1815 410 202 12 12 chr1 161290729 161290814 -35904618 + MER67C LTR ERV1 1 85 -626 5 1815 1553 161 140 11 chr1 161290952 161291309 -35904123 - Lx9 LINE L1 -7 7637 7235 5 1815 466 319 70 17 chr1 161291790 161292077 -35903355 + MER67C LTR ERV1 294 595 -116 5 1815 8972 124 24 55 chr1 161292116 161292901 -35902531 + Lx3B LINE L1 5032 5800 -86 5 1815 1168 82 0 0 chr1 161292901 161293048 -35902384 + B1_Mm SINE Alu 1 147 0 5 1815 8972 114 23 42 chr1 161293048 161294246 -35901186 + Lx3B LINE L1 5799 6972 -1 5 1815 21 0 0 0 chr1 161294246 161294267 -35901165 + AT_rich Low_complexity Low_complexity 1 21 0 5 1815 396 95 0 0 chr1 161294273 161294336 -35901096 + B1_Mus2 SINE Alu 85 147 0 5 1815 180 0 0 0 chr1 161294336 161294356 -35901076 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1815 32904 75 19 5 chr1 161294356 161299119 -35896313 + L1Md_F2 LINE L1 415 5233 -650 5 1815 585 0 0 0 chr1 161299119 161299184 -35896248 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1815 32904 71 7 6 chr1 161299184 161299519 -35895913 + L1Md_F2 LINE L1 5234 5583 -300 5 1815 7689 67 8 5 chr1 161299522 161300505 -35894927 + L1Md_F2 LINE L1 5588 6573 -9 5 1815 1180 263 75 20 chr1 161300791 161300979 -35894453 - MTE2b LTR MaLR -15 364 160 5 1815 387 0 0 0 chr1 161300979 161301022 -35894410 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1815 1180 263 75 20 chr1 161301022 161301178 -35894254 - MTE2b LTR MaLR -220 159 1 5 1815 23 54 0 0 chr1 161302780 161302817 -35892615 + AT_rich Low_complexity Low_complexity 1 37 0 5 1815 1855 189 40 40 chr1 161303280 161303660 -35891772 + RLTR14 LTR ERV1 3 382 0 5 1815 1549 176 131 3 chr1 161303678 161304015 -35891417 + ORR1B1 LTR MaLR 7 386 -8 5 1815 855 216 100 39 chr1 161304352 161304631 -35890801 + RMER5 LTR ERV1 167 462 -72 5 1815 1657 188 119 5 chr1 161305436 161305805 -35889627 - MTD LTR MaLR -5 414 4 5 1815 236 30 30 0 chr1 161306110 161306143 -35889289 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1815 238 242 65 0 chr1 161306879 161306941 -35888491 - MER21B LTR ERV1 -791 72 7 5 1815 1005 297 87 18 chr1 161307462 161307863 -35887569 + RCHARR1 DNA MER1_type 57 485 -489 5 1815 643 228 0 0 chr1 161307876 161308003 -35887429 + B1F SINE Alu 22 148 -1 5 1815 351 0 0 0 chr1 161308018 161308057 -35887375 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1815 1057 111 0 0 chr1 161308057 161308201 -35887231 - B1_Mus2 SINE Alu -2 145 2 5 1815 405 252 363 17 chr1 161308203 161308483 -35886949 + RCHARR1 DNA MER1_type 502 878 -96 5 1815 473 224 0 0 chr1 161309430 161309528 -35885904 + PB1 SINE Alu 2 99 -28 5 1815 243 0 0 0 chr1 161309559 161309586 -35885846 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1815 1045 43 7 7 chr1 161309921 161310061 -35885371 + (GAA)n Simple_repeat Simple_repeat 2 141 0 5 1815 329 200 28 14 chr1 161310080 161310151 -35885281 + RCHARR1 DNA MER1_type 895 966 -8 5 1815 461 290 135 91 chr1 161310450 161310578 -35884854 - Lx8 LINE L1 -10 7463 7329 5 1815 935 167 165 11 chr1 161310578 161310760 -35884672 - B3 SINE B2 -6 210 1 5 1815 461 290 135 91 chr1 161310760 161310927 -35884505 - Lx8 LINE L1 -145 7328 7155 5 1815 5050 197 55 13 chr1 161311120 161312118 -35883314 + Lx5 LINE L1 5946 6985 -65 5 1815 827 125 7 0 chr1 161312162 161312298 -35883134 + (GAAA)n Simple_repeat Simple_repeat 3 139 0 5 1815 507 17 0 0 chr1 161312340 161312400 -35883032 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1815 550 184 154 90 chr1 161312422 161312558 -35882874 - B3 SINE B2 -57 159 4 5 1815 4003 249 35 50 chr1 161312562 161313634 -35881798 - Lx8 LINE L1 -322 7151 6097 5 1815 189 0 0 0 chr1 161314022 161314043 -35881389 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1815 1291 20 0 0 chr1 161314043 161314190 -35881242 - B1_Mus2 SINE Alu 0 147 1 5 1815 216 158 0 0 chr1 161314697 161314735 -35880697 + CT-rich Low_complexity Low_complexity 2 39 0 5 1815 515 211 0 43 chr1 161314736 161314847 -35880585 + polypyrimidine Low_complexity Low_complexity 76 180 0 5 1815 1122 92 0 0 chr1 161314847 161314989 -35880443 - B1_Mus1 SINE Alu -6 142 1 5 1815 515 211 0 43 chr1 161314989 161315065 -35880367 + polypyrimidine Low_complexity Low_complexity 1 75 0 5 1815 378 0 0 0 chr1 161316247 161316289 -35879143 + (CTG)n Simple_repeat Simple_repeat 1 42 0 5 1815 404 19 19 0 chr1 161316623 161316676 -35878756 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1815 401 127 0 0 chr1 161317286 161317371 -35878061 - URR1B DNA MER1_type 0 225 58 5 1815 245 255 73 2 chr1 161318048 161318140 -35877292 + MIR SINE MIR 62 148 -114 5 1815 732 259 90 26 chr1 161318217 161318451 -35876981 - B4 SINE B4 -38 254 6 5 1815 687 226 22 14 chr1 161318465 161318604 -35876828 - ID_B1 SINE B4 -6 218 79 5 1815 196 313 107 57 chr1 161319225 161319347 -35876085 + MIR SINE MIR 113 240 -22 5 1815 823 115 119 19 chr1 161319668 161319827 -35875605 - URR1A DNA MER1_type 0 226 52 5 1815 378 74 0 0 chr1 161320582 161320636 -35874796 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 5 1815 486 0 0 0 chr1 161321370 161321424 -35874008 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 5 1815 251 256 58 47 chr1 161321440 161321526 -35873906 - B1F2 SINE Alu -24 125 39 5 1815 180 0 0 0 chr1 161321614 161321634 -35873798 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 5 1815 396 0 0 0 chr1 161322119 161322163 -35873269 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1815 576 0 0 0 chr1 161322163 161322226 -35873206 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1815 774 232 6 6 chr1 161322236 161322401 -35873031 - B4A SINE B4 -42 250 86 5 1815 460 236 89 8 chr1 161322448 161322572 -35872860 - B4A SINE B4 -157 135 2 5 1815 185 298 0 0 chr1 161322658 161322715 -35872717 - MIRc SINE MIR -129 139 83 5 1815 242 345 108 0 chr1 161323783 161323922 -35871510 + MIRb SINE MIR 31 188 -80 5 1815 203 0 0 36 chr1 161323975 161324003 -35871429 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5 1815 836 278 14 0 chr1 161324697 161324909 -35870523 + ID_B1 SINE B4 8 222 -2 5 1815 442 289 66 0 chr1 161325007 161325128 -35870304 + RSINE1 SINE B4 2 130 -35 5 1815 516 306 68 29 chr1 161325290 161325569 -35869863 + MER33 DNA MER1_type 34 323 -1 5 1815 288 278 0 72 chr1 161326426 161326523 -35868909 + MIR SINE MIR 30 119 -89 5 1815 320 237 226 0 chr1 161327242 161327335 -35868097 - PB1D10 SINE Alu 0 117 4 5 1815 194 222 67 0 chr1 161327737 161327782 -35867650 - MIR SINE MIR -187 75 28 5 1815 570 196 9 0 chr1 161327990 161328097 -35867335 + URR1A DNA MER1_type 3 110 -116 5 1815 911 26 26 0 chr1 161328097 161328213 -35867219 + (GGAGAA)n Simple_repeat Simple_repeat 6 124 0 5 1815 1202 100 0 6 chr1 161328215 161328396 -35867036 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1815 669 96 10 0 chr1 161328396 161328500 -35866932 + URR1A DNA MER1_type 121 225 -1 5 1815 440 267 32 53 chr1 161328847 161329037 -35866395 + MamRep564 Unknown Unknown 44 229 -128 5 1815 489 283 0 0 chr1 161330940 161331053 -35864379 - PB1D10 SINE Alu 0 117 5 5 1815 3150 61 8 2 chr1 161332019 161332413 -35863019 + MTA_Mm LTR MaLR 1 396 0 5 1815 1204 247 68 76 chr1 161332414 161332563 -35862869 + MTEa LTR MaLR 19 178 -201 5 1815 1003 209 48 5 chr1 161332563 161332770 -35862662 + B3 SINE B2 1 216 0 5 1815 1204 247 68 76 chr1 161332770 161332829 -35862603 + MTEa LTR MaLR 179 220 -159 5 1815 3480 39 0 128 chr1 161332829 161333329 -35862103 - RLTR10C LTR ERVK 0 436 1 5 1815 1204 247 68 76 chr1 161333329 161333474 -35861958 + MTEa LTR MaLR 221 370 -9 5 1815 613 257 20 14 chr1 161335149 161335295 -35860137 - B1F1 SINE Alu 0 149 3 5 1815 399 21 0 0 chr1 161335539 161335587 -35859845 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1815 225 0 0 0 chr1 161335589 161335614 -35859818 + (TTGTG)n Simple_repeat Simple_repeat 5 29 0 5 1815 192 152 0 0 chr1 161335688 161335721 -35859711 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1815 245 200 61 35 chr1 161335748 161335862 -35859570 + (TG)n Simple_repeat Simple_repeat 2 118 0 5 1815 180 0 0 0 chr1 161335908 161335928 -35859504 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1815 230 302 46 11 chr1 161337530 161337617 -35857815 - MIR SINE MIR -78 184 95 5 1815 189 302 185 11 chr1 161338321 161338505 -35856927 - L3 LINE CR1 -149 4340 4125 5 1815 419 0 20 0 chr1 161338837 161338888 -35856544 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1815 1546 291 52 34 chr1 161339138 161339700 -35855732 + Tigger7 DNA MER2_type 51 622 -1869 5 1815 417 255 68 40 chr1 161341351 161341636 -35853796 + MTEa LTR MaLR 1 371 -8 5 1815 434 257 9 9 chr1 161342634 161342740 -35852692 - ID_B1 SINE B4 -19 205 100 5 1815 219 192 0 19 chr1 161342763 161342816 -35852616 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 5 1815 587 309 12 24 chr1 161343051 161343220 -35852212 + ID_B1 SINE B4 42 208 -16 5 1815 304 273 94 9 chr1 161344752 161344863 -35850569 - PB1 SINE Alu -101 210 13 5 1815 909 235 13 58 chr1 161344899 161345125 -35850307 + B3 SINE B2 1 216 0 5 1815 531 45 0 0 chr1 161345294 161345360 -35850072 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1815 432 0 0 0 chr1 161345716 161345764 -35849668 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1815 684 260 56 28 chr1 161345881 161346130 -35849302 + MER46C DNA MER2_type 80 335 -3 5 1815 312 91 0 0 chr1 161346294 161346338 -35849094 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 1815 227 277 93 66 chr1 161346783 161346934 -35848498 + MIR SINE MIR 50 211 -57 5 1815 714 243 101 101 chr1 161346984 161347350 -35848082 + L1MB3 LINE L1 5818 6183 0 6 1815 325 221 0 0 chr1 161347360 161347428 -35848004 + L1MB8 LINE L1 6093 6160 -18 6 1815 224 237 48 48 chr1 161348434 161348496 -35846936 + MIRm SINE MIR 120 181 -95 6 1815 224 274 127 20 chr1 161348647 161348757 -35846675 + L2c LINE L2 3250 3375 0 6 1815 659 228 107 39 chr1 161348761 161348966 -35846466 - B4A SINE B4 -68 224 6 6 1816 1290 186 36 225 chr1 161349794 161350260 -35845172 + ORR1C1 LTR MaLR 1 378 0 6 1816 228 35 0 0 chr1 161350349 161350378 -35845054 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1816 266 197 40 0 chr1 161350636 161350712 -35844720 + T-rich Low_complexity Low_complexity 4 82 0 6 1816 822 260 58 5 chr1 161350727 161350932 -35844500 - B3 SINE B2 0 216 1 6 1816 315 0 0 0 chr1 161351606 161351641 -35843791 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1816 234 0 0 0 chr1 161351744 161351770 -35843662 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1816 849 119 0 7 chr1 161351889 161352033 -35843399 - URR1B DNA MER1_type 0 225 83 6 1816 389 327 34 73 chr1 161352096 161352274 -35843158 - MLT1J LTR MaLR -115 397 227 6 1816 180 216 0 26 chr1 161352274 161352312 -35843120 - MER5B DNA MER1_type -50 128 92 6 1816 2168 138 23 59 chr1 161354036 161354428 -35841004 - ORR1C1 LTR MaLR 0 378 1 6 1816 456 241 26 18 chr1 161354593 161354707 -35840725 + PB1D7 SINE Alu 6 120 0 6 1816 447 265 0 29 chr1 161355019 161355124 -35840308 + PB1D10 SINE Alu 1 102 -15 6 1816 260 250 71 0 chr1 161355948 161356032 -35839400 - L1MA8 LINE L1 0 6291 6202 6 1816 1795 190 186 0 chr1 161356036 161356344 -35839088 - RMER15 LTR ERVL -7 568 205 6 1816 522 0 0 0 chr1 161356344 161356402 -35839030 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 6 1816 1795 190 186 0 chr1 161356402 161356572 -35838860 - RMER15 LTR ERVL -371 204 2 6 1816 228 246 16 0 chr1 161356572 161356633 -35838799 - L1MA8 LINE L1 -85 6206 6145 6 1816 948 261 129 0 chr1 161356884 161357179 -35838253 - MTEa LTR MaLR -46 333 1 6 1816 768 275 121 15 chr1 161357179 161357452 -35837980 - MTEa-int LTR MaLR 0 1580 1279 6 1816 1757 266 128 19 chr1 161357763 161358333 -35837099 - MTEa-int LTR MaLR -316 1264 633 6 1816 323 344 56 32 chr1 161358505 161358757 -35836675 - L1M5 LINE L1 -580 5544 5287 6 1816 1413 55 44 0 chr1 161358866 161358889 -35836543 - B2_Mm1a SINE B2 -1 192 162 6 1816 351 0 0 0 chr1 161358889 161358928 -35836504 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1816 1413 55 44 0 chr1 161358928 161359087 -35836345 - B2_Mm1a SINE B2 -32 161 3 6 1816 291 54 0 0 chr1 161359999 161360036 -35835396 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1816 684 188 102 87 chr1 161360183 161360404 -35835028 + ORR1D1 LTR MaLR 1 228 -139 6 1816 1101 163 30 0 chr1 161360448 161360651 -35834781 + ORR1D1 LTR MaLR 166 374 0 6 1816 240 226 0 0 chr1 161360945 161361007 -35834425 + CT-rich Low_complexity Low_complexity 3 64 0 6 1816 410 238 10 0 chr1 161361009 161361110 -35834322 - B1_Mur1 SINE Alu -21 128 27 6 1816 32 0 0 0 chr1 161362071 161362103 -35833329 + AT_rich Low_complexity Low_complexity 1 32 0 6 1816 447 52 0 0 chr1 161362600 161362658 -35832774 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1816 698 289 71 57 chr1 161362665 161362947 -35832485 - B4A SINE B4 -5 287 2 6 1816 198 0 0 0 chr1 161363195 161363217 -35832215 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1816 432 269 95 6 chr1 161363583 161363749 -35831683 - MIR SINE MIR -64 204 26 6 1816 438 36 0 0 chr1 161364968 161365024 -35830408 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1816 948 255 72 88 chr1 161365897 161366089 -35829343 - RMER5 LTR ERV1 -4 530 344 6 1816 895 234 65 0 chr1 161366089 161366273 -35829159 - B3A SINE B2 -1 197 2 6 1816 948 255 72 88 chr1 161366273 161366480 -35828952 - RMER5 LTR ERV1 -191 343 137 6 1816 8330 62 10 5 chr1 161366480 161367665 -35827767 - L1_Mus3 LINE L1 -6 6632 5441 6 1816 1334 199 120 23 chr1 161367935 161368285 -35827147 - ORR1C2 LTR MaLR 0 384 1 6 1816 239 341 120 5 chr1 161368719 161368928 -35826504 + B4A SINE B4 2 234 -58 6 1816 212 259 37 0 chr1 161369420 161369474 -35825958 + CT-rich Low_complexity Low_complexity 2 57 0 6 1816 24 32 0 0 chr1 161369712 161369743 -35825689 + AT_rich Low_complexity Low_complexity 1 31 0 6 1816 259 346 55 40 chr1 161370142 161370341 -35825091 - L2 LINE L2 -559 2860 2659 6 1816 588 161 40 8 chr1 161370900 161371025 -35824407 + Lx5 LINE L1 6919 7047 -3 6 1816 361 211 278 0 chr1 161373704 161373794 -35821638 + PB1D7 SINE Alu 5 119 -1 6 1816 435 87 0 0 chr1 161373814 161373883 -35821549 + (CAACC)n Simple_repeat Simple_repeat 5 73 0 6 1816 737 161 14 0 chr1 161373958 161374101 -35821331 + (CATATA)n Simple_repeat Simple_repeat 3 147 0 6 1816 643 247 65 0 chr1 161374101 161374255 -35821177 - B3 SINE B2 -51 165 2 6 1816 451 322 71 13 chr1 161374334 161374488 -35820944 - RSINE1 SINE B4 0 165 3 6 1816 263 246 0 0 chr1 161375578 161375639 -35819793 + GA-rich Low_complexity Low_complexity 2 62 0 6 1816 279 0 0 0 chr1 161375642 161375673 -35819759 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1816 428 0 19 0 chr1 161375673 161375724 -35819708 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1816 469 343 45 42 chr1 161378038 161378391 -35817041 - ORR1E LTR MaLR -5 354 1 6 1816 565 321 120 13 chr1 161378508 161378678 -35816754 + MLT1F LTR MaLR 182 382 -166 6 1816 504 0 0 0 chr1 161378678 161378734 -35816698 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1816 565 321 120 13 chr1 161378734 161378879 -35816553 + MLT1F LTR MaLR 383 530 -18 6 1816 240 315 17 125 chr1 161379201 161379433 -35815999 + MIRc SINE MIR 42 248 -20 6 1816 233 336 77 63 chr1 161379472 161379615 -35815817 - L2c LINE L2 -18 3369 3225 6 1816 594 0 0 0 chr1 161380282 161380348 -35815084 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1816 892 221 85 0 chr1 161381706 161381905 -35813527 - B3 SINE B2 0 216 1 6 1816 741 113 8 0 chr1 161383166 161383290 -35812142 + L1Md_F2 LINE L1 6458 6582 0 6 1816 972 278 58 19 chr1 161383718 161384289 -35811143 + L1M5 LINE L1 5018 5605 -568 6 1816 241 313 134 17 chr1 161384436 161384667 -35810765 - L1MC LINE L1 -1855 4291 4034 6 1816 942 287 44 19 chr1 161385174 161385444 -35809988 - B4A SINE B4 -8 284 8 6 1816 498 264 174 41 chr1 161386046 161386460 -35808972 - L1ME2z LINE L1 -414 6030 5562 6 1816 306 281 98 30 chr1 161386468 161386600 -35808832 - B1F SINE Alu -7 142 2 6 1816 332 296 86 9 chr1 161386641 161386757 -35808675 - RSINE1 SINE B4 0 165 41 6 1816 285 315 135 14 chr1 161386813 161386961 -35808471 - L1ME2z LINE L1 -888 5556 5391 6 1816 22 0 0 0 chr1 161387208 161387230 -35808202 + AT_rich Low_complexity Low_complexity 1 22 0 6 1816 629 318 47 7 chr1 161387257 161387484 -35807948 - L1MA6 LINE L1 -2 6298 6059 6 1816 1102 254 222 41 chr1 161387484 161387524 -35807908 - MT2B LTR ERVL 0 601 546 6 1816 618 109 0 0 chr1 161387524 161387625 -35807807 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 6 1816 1102 254 222 41 chr1 161387625 161388093 -35807339 - MT2B LTR ERVL -56 545 1 6 1816 629 318 47 7 chr1 161388093 161388141 -35807291 - L1MA6 LINE L1 -242 6058 6012 6 1816 821 317 55 19 chr1 161388147 161388675 -35806757 - L1ME2z LINE L1 -2297 3849 3303 6 1816 268 265 71 0 chr1 161388678 161388776 -35806656 - MLT1F1 LTR MaLR 0 560 456 6 1816 283 254 218 53 chr1 161388787 161388920 -35806512 + RSINE1 SINE B4 11 165 0 6 1816 594 306 189 16 chr1 161388943 161389308 -35806124 - MLT1F1 LTR MaLR -136 433 6 6 1816 378 0 0 0 chr1 161389312 161389354 -35806078 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 6 1816 219 145 43 0 chr1 161389372 161389441 -35805991 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1816 22 35 0 0 chr1 161389527 161389556 -35805876 + AT_rich Low_complexity Low_complexity 1 29 0 6 1816 269 179 0 0 chr1 161389816 161389872 -35805560 + MLT1A1 LTR MaLR 341 396 -12 6 1816 1343 38 0 0 chr1 161390085 161390244 -35805188 + L1_Mm LINE L1 5174 5332 -551 6 1816 304 295 60 13 chr1 161390244 161390395 -35805037 - MIR SINE MIR -102 160 3 6 1816 613 270 88 152 chr1 161390704 161390849 -35804583 + ORR1D2 LTR MaLR 64 162 -208 6 1816 2178 159 40 103 chr1 161390849 161391325 -35804107 - RLTR41 LTR ERV1 0 446 1 6 1816 613 270 88 152 chr1 161391325 161391507 -35803925 + ORR1D2 LTR MaLR 163 370 0 6 1816 22 0 0 0 chr1 161391795 161391817 -35803615 + AT_rich Low_complexity Low_complexity 1 22 0 6 1816 315 71 0 0 chr1 161393291 161393333 -35802099 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1816 543 260 15 23 chr1 161393351 161393481 -35801951 - B4A SINE B4 0 292 164 6 1816 288 111 0 0 chr1 161393562 161393607 -35801825 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 6 1816 495 262 8 8 chr1 161393850 161393977 -35801455 - ID_B1 SINE B4 -3 221 95 6 1816 847 283 13 84 chr1 161394183 161394492 -35800940 + B4A SINE B4 3 289 -3 6 1816 396 0 0 0 chr1 161394902 161394946 -35800486 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1816 2019 126 198 16 chr1 161395309 161395673 -35799759 - RLTR23 LTR ERV1 0 430 1 6 1816 282 56 0 0 chr1 161395739 161395775 -35799657 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 6 1816 978 147 66 33 chr1 161395891 161396102 -35799330 - MTC LTR MaLR -201 220 3 6 1816 387 0 0 0 chr1 161396214 161396257 -35799175 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1816 203 88 0 29 chr1 161396674 161396709 -35798723 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1816 213 196 0 0 chr1 161396998 161397049 -35798383 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1816 292 326 64 39 chr1 161399680 161399884 -35795548 + MER77 LTR ERVL 399 607 0 6 1816 1347 307 44 28 chr1 161400342 161401112 -35794320 - L1MA4 LINE L1 -381 5919 5094 6 1816 260 259 113 0 chr1 161401180 161401312 -35794120 + L1_Mur3 LINE L1 4146 4290 -1587 6 1816 515 247 16 70 chr1 161401325 161401431 -35794001 - L1MA4 LINE L1 -1063 5080 4980 6 1816 324 0 0 0 chr1 161401431 161401467 -35793965 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1816 515 247 16 70 chr1 161401467 161401547 -35793885 - L1MA4 LINE L1 -1164 4979 4904 6 1816 440 256 73 0 chr1 161401564 161401728 -35793704 - L1MA4 LINE L1 -1381 4762 4587 6 1816 595 337 49 52 chr1 161402050 161402416 -35793016 - MLT1E2 LTR MaLR -260 367 3 6 1816 366 23 0 0 chr1 161402591 161402634 -35792798 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1816 416 329 135 28 chr1 161402748 161402821 -35792611 + MER110 LTR ERV1 166 244 -247 6 1816 4845 75 16 3 chr1 161402821 161403453 -35791979 - L1_Mus1 LINE L1 0 6567 5928 6 1816 416 329 135 28 chr1 161403453 161403667 -35791765 + MER110 LTR ERV1 245 484 -7 6 1816 1272 104 4 124 chr1 161404112 161404299 -35791133 - ORR1A2 LTR MaLR -113 214 48 7 1816 406 125 0 24 chr1 161404299 161404381 -35791051 - L1Md_F2 LINE L1 0 6582 6503 7 1816 1272 104 4 124 chr1 161404381 161404434 -35790998 - ORR1A2 LTR MaLR -280 47 3 7 1816 334 309 16 8 chr1 161404617 161404744 -35790688 + CT-rich Low_complexity Low_complexity 2 129 0 7 1816 1036 269 70 6 chr1 161405273 161405587 -35789845 + MLT1B LTR MaLR 48 381 -9 7 1816 288 40 0 57 chr1 161406560 161406613 -35788819 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1816 570 263 115 31 chr1 161406936 161407128 -35788304 - ID_B1 SINE B4 -6 218 11 7 1816 1918 243 137 33 chr1 161407129 161408203 -35787229 - L1M3 LINE L1 -668 5500 4300 7 1816 229 323 0 68 chr1 161408632 161408735 -35786697 + ORR1D2 LTR MaLR 14 109 -261 7 1816 318 260 38 25 chr1 161408727 161408806 -35786626 - ORR1D2 LTR MaLR -185 185 106 7 1816 208 183 32 32 chr1 161409594 161409656 -35785776 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 7 1816 216 0 0 0 chr1 161410404 161410428 -35785004 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 7 1816 239 306 69 101 chr1 161410587 161410776 -35784656 + MLT1H LTR MaLR 49 231 -318 7 1816 299 296 196 51 chr1 161412144 161412358 -35783074 + MLT1H LTR MaLR 248 492 -57 7 1816 632 261 59 11 chr1 161412361 161412547 -35782885 + MLT2D LTR ERVL 5 199 -215 7 1816 403 355 20 20 chr1 161414003 161414253 -35781179 - LTR85a LTR Gypsy? -24 678 429 7 1816 364 208 9 9 chr1 161416389 161416496 -35778936 + GA-rich Low_complexity Low_complexity 2 108 0 7 1816 2142 245 122 8 chr1 161418662 161419254 -35776178 + RMER13A LTR ERVK 1 659 -201 7 1816 378 294 45 13 chr1 161419410 161419565 -35775867 + MIR SINE MIR 1 160 -102 7 1816 1111 260 128 39 chr1 161420023 161420611 -35774821 - Lx8 LINE L1 0 7473 6816 7 1816 215 352 171 4 chr1 161421012 161421240 -35774192 - L2c LINE L2 -11 3376 3111 7 1816 212 261 0 0 chr1 161421729 161421775 -35773657 + CT-rich Low_complexity Low_complexity 3 48 0 7 1816 198 0 0 0 chr1 161422486 161422508 -35772924 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1816 392 287 48 16 chr1 161424944 161425068 -35770364 - B1F SINE Alu -10 139 12 7 1816 1925 194 15 53 chr1 161425765 161426158 -35769274 - ORR1C1 LTR MaLR 0 378 1 7 1816 334 286 111 28 chr1 161426158 161426302 -35769130 - MER5A1 DNA MER1_type -10 156 1 7 1816 802 281 54 22 chr1 161426972 161427248 -35768184 - B4 SINE B4 -1 291 7 7 1816 221 152 49 33 chr1 161428419 161428480 -35766952 + A-rich Low_complexity Low_complexity 2 63 0 7 1816 302 348 97 24 chr1 161428993 161429128 -35766304 + MIRb SINE MIR 14 158 -110 7 1816 2187 160 77 5 chr1 161429128 161429517 -35765915 + MTC LTR MaLR 5 421 0 7 1816 302 348 97 24 chr1 161429517 161429587 -35765845 + MIRb SINE MIR 159 234 -34 7 1816 605 333 84 30 chr1 161429675 161430046 -35765386 - MLT2C1 LTR ERVL -5 392 2 7 1816 195 129 0 0 chr1 161431155 161431186 -35764246 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1816 327 49 0 0 chr1 161431733 161431774 -35763658 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1816 188 315 11 33 chr1 161432280 161432372 -35763060 + MIRc SINE MIR 98 187 -81 7 1816 292 247 186 0 chr1 161432667 161432764 -35762668 - MLT1A1 LTR MaLR -26 382 268 7 1816 247 315 99 0 chr1 161433672 161433783 -35761649 + Charlie15a DNA MER1_type 103 224 0 7 1816 366 23 0 0 chr1 161434148 161434191 -35761241 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1816 389 309 32 0 chr1 161434575 161434669 -35760763 + PB1D10 SINE Alu 10 106 -11 7 1816 398 346 93 2 chr1 161434739 161435011 -35760421 + MLT1J1 LTR MaLR 15 316 -128 7 1816 614 259 56 179 chr1 161435353 161435743 -35759689 + RMER13A LTR ERVK 1 342 -518 7 1816 1063 93 0 0 chr1 161436034 161436173 -35759259 + B1_Mus1 SINE Alu 1 139 -9 7 1816 235 292 109 83 chr1 161436377 161436653 -35758779 + ORR1D2 LTR MaLR 88 370 0 7 1816 207 291 18 0 chr1 161436818 161436873 -35758559 + MIRc SINE MIR 22 77 -191 7 1816 709 267 86 86 chr1 161437821 161438215 -35757217 - MLT1C LTR MaLR -73 394 1 7 1816 180 0 0 0 chr1 161438388 161438408 -35757024 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1816 1195 282 45 33 chr1 161438437 161438924 -35756508 + RMER5 LTR ERV1 40 532 -2 7 1816 825 253 59 31 chr1 161438967 161439289 -35756143 + L1MC1 LINE L1 6003 6333 0 7 1816 570 54 0 0 chr1 161439322 161439396 -35756036 + (CTCA)n Simple_repeat Simple_repeat 1 74 0 7 1816 219 210 54 120 chr1 161440154 161440246 -35755186 - L2c LINE L2 -8 3379 3294 7 1816 190 27 108 0 chr1 161440291 161440328 -35755104 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1816 591 27 0 0 chr1 161440332 161440405 -35755027 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1816 226 295 113 26 chr1 161441745 161441860 -35753572 + MIR SINE MIR 74 198 -64 7 1816 343 55 18 18 chr1 161441895 161441950 -35753482 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1816 272 277 93 78 chr1 161442786 161442915 -35752517 + MIR3 SINE MIR 77 207 -1 7 1816 251 236 0 33 chr1 161443095 161443164 -35752268 + MIRb SINE MIR 189 251 -11 7 1816 994 255 82 4 chr1 161443982 161444226 -35751206 + MTEb LTR MaLR 1 263 -116 7 1816 27 0 0 0 chr1 161444564 161444591 -35750841 + AT_rich Low_complexity Low_complexity 1 27 0 7 1816 681 13 0 0 chr1 161445191 161445269 -35750163 + (GA)n Simple_repeat Simple_repeat 2 79 0 7 1816 1154 242 51 48 chr1 161446549 161446905 -35748527 - ORR1E LTR MaLR -2 357 1 7 1816 449 297 136 56 chr1 161447117 161447441 -35747991 - MLT1A1 LTR MaLR -58 350 1 7 1816 236 40 39 39 chr1 161448692 161448744 -35746688 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 7 1816 298 292 62 0 chr1 161448746 161448842 -35746590 + PB1D7 SINE Alu 19 120 0 7 1816 394 302 44 22 chr1 161453090 161453273 -35742159 + MIR SINE MIR 76 262 0 7 1816 239 319 33 0 chr1 161453351 161453442 -35741990 - MIRc SINE MIR -70 198 105 7 1816 233 189 22 22 chr1 161455336 161455428 -35740004 + CT-rich Low_complexity Low_complexity 1 92 0 7 1816 923 94 0 14 chr1 161458047 161458187 -35737245 - LTRIS2 LTR ERV1 -85 479 342 7 1816 444 265 151 9 chr1 161458977 161459202 -35736230 - L1MB3 LINE L1 -35 6148 5892 7 1816 387 310 57 50 chr1 161459262 161459558 -35735874 - B4 SINE B4 -18 274 1 7 1816 354 215 0 0 chr1 161459639 161459718 -35735714 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1816 316 133 0 0 chr1 161460672 161460741 -35734691 - MIRb SINE MIR -101 167 92 7 1816 248 188 109 0 chr1 161461076 161461140 -35734292 - MIRc SINE MIR -143 125 55 7 1816 234 227 169 26 chr1 161461231 161461308 -35734124 + 4.5SRNA scRNA scRNA 4 91 -3 7 1816 859 266 94 8 chr1 161461314 161461579 -35733853 + B4A SINE B4 5 292 0 7 1816 198 321 93 19 chr1 161461633 161461741 -35733691 + MIRc SINE MIR 22 137 -131 7 1816 232 272 58 50 chr1 161463556 161463676 -35731756 + MIRb SINE MIR 61 181 -87 7 1816 483 234 95 16 chr1 161463946 161464072 -35731360 - B3A SINE B2 -10 188 53 7 1816 650 167 167 0 chr1 161464111 161464237 -35731195 - B1_Mus1 SINE Alu -1 147 1 7 1816 507 294 24 18 chr1 161466754 161466920 -35728512 + B4A SINE B4 9 175 -117 7 1816 681 53 0 0 chr1 161467025 161467119 -35728313 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 1816 33 0 0 0 chr1 161468886 161468919 -35726513 + AT_rich Low_complexity Low_complexity 1 33 0 7 1816 190 200 0 0 chr1 161469253 161469288 -35726144 + L2b LINE L2 3323 3357 -18 7 1816 495 0 0 0 chr1 161470627 161470682 -35724750 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1816 303 276 244 0 chr1 161470838 161470961 -35724471 + MTE2b LTR MaLR 1 153 -226 7 1816 801 241 47 0 chr1 161471064 161471234 -35724198 - MTEa LTR MaLR -191 188 11 7 1816 1722 211 33 11 chr1 161472180 161472540 -35722892 + ORR1D2 LTR MaLR 1 368 -2 7 1816 1253 274 63 11 chr1 161472543 161472894 -35722538 - MTEa LTR MaLR -8 371 3 7 1816 200 203 42 42 chr1 161473638 161473710 -35721722 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 7 1816 204 360 9 43 chr1 161474531 161474647 -35720785 + L2b LINE L2 3067 3178 -197 7 1816 190 340 30 10 chr1 161475099 161475200 -35720232 + L2b LINE L2 3322 3424 -2 7 1816 180 254 0 0 chr1 161475406 161475465 -35719967 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 7 1816 335 178 27 0 chr1 161476661 161476734 -35718698 - B1F SINE Alu -60 89 15 7 1816 198 336 43 86 chr1 161479090 161479230 -35716202 - MIRc SINE MIR -111 157 24 7 1816 283 301 62 67 chr1 161479520 161479698 -35715734 - MER5B DNA MER1_type -1 177 1 7 1817 849 110 0 0 chr1 161482695 161482822 -35712610 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 7 1817 325 318 116 59 chr1 161483651 161484143 -35711289 + L2 LINE L2 2332 2851 -568 7 1817 1051 289 151 52 chr1 161484349 161484846 -35710586 + MER44B DNA MER2_type 4 549 -1 7 1817 294 29 0 0 chr1 161485255 161485290 -35710142 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1817 186 107 0 0 chr1 161485619 161485647 -35709785 - MIRm SINE MIR -158 118 91 7 1817 326 325 129 53 chr1 161486154 161486417 -35709015 - B4 SINE B4 -7 285 3 7 1817 291 28 0 0 chr1 161487007 161487043 -35708389 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1817 281 350 64 73 chr1 161487081 161487300 -35708132 - B4A SINE B4 -75 217 1 7 1817 486 33 0 0 chr1 161487323 161487383 -35708049 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1817 24 32 0 0 chr1 161488327 161488358 -35707074 + AT_rich Low_complexity Low_complexity 1 31 0 7 1817 21 0 0 0 chr1 161489286 161489307 -35706125 + AT_rich Low_complexity Low_complexity 1 21 0 8 1817 429 225 170 9 chr1 161489401 161489513 -35705919 + B1F2 SINE Alu 1 130 -19 8 1817 371 225 14 0 chr1 161490276 161490347 -35705085 + ID2 SINE ID 2 73 -10 8 1817 849 268 74 9 chr1 161490627 161490857 -35704575 - Lx9 LINE L1 -224 7420 7176 8 1817 652 177 177 0 chr1 161490853 161491039 -35704393 + Lx9 LINE L1 7417 7635 -9 8 1817 1653 124 30 0 chr1 161491037 161491302 -35704130 + L1_Mur1 LINE L1 4396 4668 -1218 8 1817 281 159 63 0 chr1 161491295 161491358 -35704074 + Lx LINE L1 6581 6647 -7 8 1817 687 99 0 0 chr1 161492192 161492293 -35703139 + (TCCC)n Simple_repeat Simple_repeat 3 103 0 8 1817 252 0 0 0 chr1 161492293 161492321 -35703111 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 8 1817 1085 91 0 7 chr1 161492323 161492467 -35702965 - B1_Mus1 SINE Alu -5 143 1 8 1817 402 260 58 58 chr1 161492580 161492768 -35702664 - L1MB4 LINE L1 -1 6179 5992 8 1817 279 0 0 0 chr1 161492881 161492912 -35702520 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1817 1085 286 48 98 chr1 161492943 161493342 -35702090 - MTE2b LTR MaLR 0 379 1 8 1817 2651 48 0 0 chr1 161493987 161494303 -35701129 - L1_Mus1 LINE L1 -3 6564 6249 8 1817 214 200 0 0 chr1 161494435 161494475 -35700957 + T-rich Low_complexity Low_complexity 1 40 0 8 1817 246 128 0 0 chr1 161494596 161494635 -35700797 + (TTG)n Simple_repeat Simple_repeat 3 41 0 8 1817 258 247 0 0 chr1 161495690 161495767 -35699665 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1817 399 270 31 16 chr1 161496459 161496587 -35698845 - MER5A1 DNA MER1_type -4 162 33 8 1817 438 329 130 48 chr1 161497830 161498184 -35697248 + LTR16B2 LTR ERVL 46 428 -34 8 1817 198 306 77 44 chr1 161498412 161498593 -35696839 + L2 LINE L2 947 1133 -2286 8 1817 195 129 0 0 chr1 161498909 161498940 -35696492 + (TCC)n Simple_repeat Simple_repeat 2 32 0 8 1817 252 271 0 157 chr1 161499102 161499185 -35696247 - ID2 SINE ID -2 81 12 8 1817 202 226 37 19 chr1 161499188 161499242 -35696190 + L2 LINE L2 2747 2801 -618 8 1817 570 235 52 0 chr1 161499651 161499787 -35695645 - B1_Mur1 SINE Alu -5 144 2 8 1817 189 267 63 53 chr1 161500083 161500178 -35695254 + MIRb SINE MIR 100 195 -73 1 1817 279 114 0 0 chr1 161501664 161501708 -35693724 + (TCCA)n Simple_repeat Simple_repeat 4 47 0 2 1817 715 269 144 89 chr1 161502114 161502641 -35692791 - MLT1F1 LTR MaLR -11 558 3 3 1817 1103 256 77 30 chr1 161502670 161503036 -35692396 - MLT1B LTR MaLR -5 385 3 4 1817 930 47 62 0 chr1 161503631 161503759 -35691673 + B1_Mm SINE Alu 12 147 0 5 1817 848 61 9 0 chr1 161503774 161503889 -35691543 + (GAAAA)n Simple_repeat Simple_repeat 4 119 0 6 1817 22 0 0 0 chr1 161503930 161503952 -35691480 + AT_rich Low_complexity Low_complexity 1 22 0 7 1817 576 0 0 0 chr1 161504097 161504161 -35691271 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 8 1817 281 349 29 34 chr1 161505215 161505390 -35690042 + L2a LINE L2 3233 3406 -20 9 1817 279 271 92 8 chr1 161506675 161506794 -35688638 + MIR SINE MIR 110 238 -24 1 1817 276 30 0 0 chr1 161507138 161507171 -35688261 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1817 295 281 0 0 chr1 161508020 161508102 -35687330 + L2a LINE L2 3341 3422 -4 1 1817 298 303 50 0 chr1 161508224 161508323 -35687109 + MIRb SINE MIR 105 208 -60 1 1817 222 272 96 21 chr1 161509221 161509315 -35686117 + L2b LINE L2 3241 3341 -34 1 1817 229 185 15 44 chr1 161509370 161509438 -35685994 + C-rich Low_complexity Low_complexity 3 68 0 1 1817 337 218 161 0 chr1 161509478 161509565 -35685867 - PB1 SINE Alu -1 126 26 1 1817 195 204 0 0 chr1 161511349 161511403 -35684029 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1817 531 192 0 0 chr1 161511415 161511582 -35683850 + (TG)n Simple_repeat Simple_repeat 2 168 0 1 1817 251 169 31 0 chr1 161513212 161513277 -35682155 + (TTG)n Simple_repeat Simple_repeat 2 68 0 1 1817 214 315 29 28 chr1 161513398 161513550 -35681882 + MIRc SINE MIR 44 191 -17 1 1817 235 323 81 0 chr1 161513704 161513803 -35681629 - B1F2 SINE Alu -42 107 1 2 1817 541 189 0 12 chr1 161514784 161514955 -35680477 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 1817 2365 160 165 42 chr1 161516818 161517339 -35678093 - RMER4B LTR ERVK 0 585 1 2 1817 320 274 119 75 chr1 161517447 161517648 -35677784 - MIR SINE MIR -32 230 21 2 1817 1355 168 5 0 chr1 161519594 161519814 -35675618 + URR1B DNA MER1_type 1 221 -4 2 1817 230 51 51 0 chr1 161521662 161521701 -35673731 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1817 207 114 0 0 chr1 161522517 161522552 -35672880 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1817 1605 204 87 5 chr1 161522595 161522745 -35672687 - MTD LTR MaLR 0 419 265 2 1817 899 112 0 7 chr1 161522745 161522889 -35672543 + (GAA)n Simple_repeat Simple_repeat 3 145 0 2 1817 1605 204 87 5 chr1 161522889 161523107 -35672325 - MTD LTR MaLR -155 264 23 2 1817 254 29 29 0 chr1 161523108 161523143 -35672289 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1817 249 108 0 0 chr1 161525263 161525300 -35670132 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1817 238 26 0 49 chr1 161525415 161525456 -35669976 + (TAA)n Simple_repeat Simple_repeat 2 40 0 3 1817 590 257 20 13 chr1 161526529 161526679 -35668753 + RSINE1 SINE B4 3 153 -12 3 1817 496 302 16 0 chr1 161527379 161527505 -35667927 + ID_B1 SINE B4 86 213 -11 3 1817 369 0 0 0 chr1 161527506 161527547 -35667885 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 3 1817 232 299 0 13 chr1 161527718 161527796 -35667636 - MIRb SINE MIR -45 223 147 3 1817 386 266 44 0 chr1 161528129 161528242 -35667190 + MER53 DNA hAT 76 193 0 3 1817 1302 73 21 5 chr1 161531361 161531554 -35663878 - ORR1B1 LTR MaLR 0 394 199 3 1817 556 205 105 82 chr1 161531582 161531775 -35663657 - ORR1B1 LTR MaLR -160 218 37 3 1817 372 311 0 9 chr1 161531977 161532084 -35663348 + CT-rich Low_complexity Low_complexity 1 106 0 3 1817 489 271 34 20 chr1 161532090 161532237 -35663195 - B1F SINE Alu 0 149 1 3 1817 244 246 45 15 chr1 161532237 161532303 -35663129 - MER5A1 DNA MER1_type -89 77 10 4 1817 602 325 109 11 chr1 161532305 161532521 -35662911 + MTEb LTR MaLR 66 310 -69 4 1817 1195 193 9 18 chr1 161532521 161532748 -35662684 - URR1B DNA MER1_type 0 225 1 4 1817 602 325 109 11 chr1 161532748 161532805 -35662627 + MTEb LTR MaLR 311 366 -13 4 1817 253 211 52 13 chr1 161534812 161534889 -35660543 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1817 594 0 0 0 chr1 161535109 161535175 -35660257 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1817 309 340 0 0 chr1 161538289 161538395 -35657037 + LFSINE_Vert SINE SINE 31 136 -323 4 1817 432 0 0 0 chr1 161538846 161538894 -35656538 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1817 283 318 84 26 chr1 161539138 161539293 -35656139 + MIRc SINE MIR 9 172 -96 4 1817 550 49 24 0 chr1 161539413 161539495 -35655937 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1817 189 0 0 0 chr1 161540104 161540125 -35655307 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1817 256 189 28 42 chr1 161541173 161541245 -35654187 + ORR1A3-int LTR MaLR 1186 1256 -707 5 1817 361 332 80 38 chr1 161541248 161541715 -35653717 - Lx3_Mus LINE L1 -491 5749 5270 5 1817 264 59 0 0 chr1 161544725 161544759 -35650673 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 5 1817 206 304 0 0 chr1 161545593 161545639 -35649793 + polypyrimidine Low_complexity Low_complexity 3 48 0 5 1817 762 298 10 20 chr1 161546358 161546435 -35648997 + ID SINE ID 3 77 -147 5 1817 245 350 26 77 chr1 161546435 161546590 -35648842 + B1_Mur3 SINE Alu 1 147 -2 5 1817 869 309 29 24 chr1 161547867 161548208 -35647224 + L4 LINE RTE 1475 1817 -212 5 1817 2358 107 3 0 chr1 161548344 161548670 -35646762 - ORR1A2 LTR MaLR 0 327 1 5 1817 289 241 25 25 chr1 161550249 161550330 -35645102 - MIRc SINE MIR -75 193 113 5 1817 270 357 0 25 chr1 161550771 161550889 -35644543 - PB1D10 SINE Alu -2 115 1 5 1817 335 340 76 56 chr1 161551345 161551594 -35643838 + L2b LINE L2 3118 3371 -4 6 1817 384 22 0 0 chr1 161552583 161552628 -35642804 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1817 1241 41 0 0 chr1 161552693 161552838 -35642594 - B1_Mm SINE Alu -1 146 2 6 1817 182 308 49 49 chr1 161553480 161553562 -35641870 - L2a LINE L2 -10 3416 3335 6 1817 1210 288 112 25 chr1 161553576 161554307 -35641125 + L1MA4 LINE L1 5055 5888 -412 6 1817 25 0 0 0 chr1 161554609 161554634 -35640798 + AT_rich Low_complexity Low_complexity 1 25 0 6 1817 212 354 42 0 chr1 161554743 161554839 -35640593 - L2a LINE L2 -291 3135 3036 6 1817 199 358 125 0 chr1 161554901 161555021 -35640411 - L2a LINE L2 -493 2926 2792 6 1817 350 276 19 0 chr1 161555021 161555126 -35640306 + B1F SINE Alu 2 108 -41 6 1817 302 296 264 14 chr1 161555161 161555377 -35640055 - L2a LINE L2 -612 2807 2538 6 1817 3588 13 2 0 chr1 161556002 161556397 -35639035 + MTA_Mm LTR MaLR 1 396 0 6 1817 441 0 0 0 chr1 161559136 161559185 -35636247 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1817 210 37 0 0 chr1 161559820 161559847 -35635585 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1817 217 128 21 21 chr1 161560523 161560571 -35634861 + CT-rich Low_complexity Low_complexity 4 51 0 7 1817 434 347 40 71 chr1 161561362 161561713 -35633719 + ORR1E LTR MaLR 6 345 -14 7 1817 432 0 0 0 chr1 161566664 161566712 -35628720 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1817 210 64 42 21 chr1 161566794 161566827 -35628605 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1817 970 90 164 29 chr1 161566827 161566998 -35628434 - B2_Mm2 SINE B2 0 195 2 7 1817 210 64 42 21 chr1 161566998 161567012 -35628420 + (TTTTG)n Simple_repeat Simple_repeat 3 16 0 7 1817 608 173 0 6 chr1 161567213 161567393 -35628039 + CT-rich Low_complexity Low_complexity 2 180 0 7 1817 543 262 0 0 chr1 161567724 161567850 -35627582 + RSINE1 SINE B4 3 128 -37 7 1817 414 0 0 0 chr1 161567853 161567899 -35627533 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1817 244 263 259 43 chr1 161568370 161568509 -35626923 - MLT1C LTR MaLR -68 437 269 7 1817 465 252 0 40 chr1 161568503 161568627 -35626805 - B3A SINE B2 -77 121 3 8 1817 309 298 48 0 chr1 161569242 161569346 -35626086 + MTEa LTR MaLR 1 109 -270 8 1817 219 200 20 0 chr1 161570644 161570694 -35624738 + RSINE1 SINE B4 2 52 -113 8 1817 201 320 112 44 chr1 161571268 161571428 -35624004 - MIR SINE MIR -3 259 89 8 1817 184 250 18 18 chr1 161571730 161571787 -35623645 - MIR SINE MIR -87 175 119 8 1817 220 317 62 21 chr1 161572608 161572753 -35622679 + MIR3 SINE MIR 57 207 -1 8 1817 249 302 58 0 chr1 161574300 161574386 -35621046 + MIR SINE MIR 49 139 -123 8 1817 221 269 19 0 chr1 161574404 161574456 -35620976 + ID4 SINE ID 18 70 -13 8 1817 440 190 100 0 chr1 161574721 161574821 -35620611 - MER5A1 DNA MER1_type -56 110 1 8 1817 181 298 0 0 chr1 161578128 161578175 -35617257 - MIR SINE MIR -152 110 64 8 1817 228 67 0 0 chr1 161578427 161578457 -35616975 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1817 1022 52 0 0 chr1 161578457 161578592 -35616840 - B1_Mus2 SINE Alu -2 145 11 9 1817 1163 69 0 0 chr1 161579038 161579182 -35616250 - B1_Mus2 SINE Alu 0 147 4 9 1817 924 271 109 34 chr1 161580505 161580918 -35614514 - MER92B LTR ERV1 -192 444 1 9 1817 471 311 74 26 chr1 161581160 161581391 -35614041 + MamRep605 Unknown Unknown 359 600 -276 9 1817 236 304 57 45 chr1 161582115 161582380 -35613052 - L1M5 LINE L1 -615 5579 5312 9 1817 2443 188 25 47 chr1 161583081 161583542 -35611890 + RLTR20A LTR ERVK 1 438 -103 9 1817 543 118 0 0 chr1 161583542 161583627 -35611805 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 1817 2443 188 25 47 chr1 161583627 161583679 -35611753 + RLTR20A LTR ERVK 439 502 -39 9 1817 731 257 69 5 chr1 161583790 161583978 -35611454 + B4A SINE B4 8 207 -85 9 1817 189 147 0 0 chr1 161583978 161584012 -35611420 + (ATG)n Simple_repeat Simple_repeat 1 34 0 9 1817 201 267 13 39 chr1 161584050 161584128 -35611304 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 1 1817 225 0 0 0 chr1 161585996 161586021 -35609411 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1817 412 322 66 0 chr1 161586545 161586697 -35608735 - MIRb SINE MIR -83 185 24 1 1817 446 0 19 0 chr1 161587458 161587512 -35607920 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1817 452 240 49 16 chr1 161589352 161589475 -35605957 + MER5A DNA MER1_type 22 148 -41 1 1817 576 325 20 5 chr1 161589503 161589707 -35605725 - L4 LINE RTE -594 1435 1229 1 1817 645 14 0 0 chr1 161592164 161592238 -35603194 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1817 1679 260 55 49 chr1 161592784 161593313 -35602119 - Lx8 LINE L1 -97 7376 6845 1 1817 229 242 16 31 chr1 161594085 161594149 -35601283 + AmnSINE1 SINE SINE 510 572 -3 1 1817 373 255 48 25 chr1 161595212 161595362 -35600070 + MIRc SINE MIR 97 248 -14 1 1817 279 306 0 0 chr1 161595505 161595577 -35599855 - Tigger7 DNA MER2_type -21 2470 2399 1 1817 347 291 172 0 chr1 161595602 161595736 -35599696 - Tigger7 DNA MER2_type -2107 384 228 1 1817 705 164 0 0 chr1 161595736 161595876 -35599556 + (TA)n Simple_repeat Simple_repeat 2 141 0 1 1817 666 126 21 99 chr1 161595930 161596071 -35599361 - Lx9 LINE L1 -372 7272 7143 1 1817 883 243 119 3 chr1 161596071 161596381 -35599051 + Lx9 LINE L1 7292 7637 -7 1 1817 459 329 24 18 chr1 161596392 161596559 -35598873 - Tigger7 DNA MER2_type -2323 168 1 1 1817 202 296 70 0 chr1 161596841 161596912 -35598520 + MIR3 SINE MIR 129 204 -4 1 1817 327 78 0 0 chr1 161598018 161598069 -35597363 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1817 230 233 26 40 chr1 161598084 161598160 -35597272 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 1 1817 922 317 3 18 chr1 161598164 161598450 -35596982 - B4A SINE B4 -6 286 5 1 1817 344 197 14 27 chr1 161600531 161600604 -35594828 - MLT1I LTR MaLR -290 121 50 1 1817 180 333 12 25 chr1 161600649 161600729 -35594703 - MIRb SINE MIR -173 95 17 1 1817 345 125 0 0 chr1 161601837 161601893 -35593539 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1817 27 0 0 0 chr1 161601922 161601949 -35593483 + AT_rich Low_complexity Low_complexity 1 27 0 1 1817 237 316 31 73 chr1 161601991 161602182 -35593250 - L1MA9 LINE L1 -47 6265 6083 1 1817 407 222 0 12 chr1 161602271 161602353 -35593079 + ID4_ SINE ID 2 82 -1 1 1817 33 80 0 0 chr1 161602363 161602438 -35592994 + AT_rich Low_complexity Low_complexity 1 75 0 1 1817 753 248 134 30 chr1 161602457 161602719 -35592713 + B4A SINE B4 2 290 -2 1 1817 213 367 26 45 chr1 161603343 161603497 -35591935 + MIRm SINE MIR 1 151 -125 1 1817 195 269 29 15 chr1 161603687 161603755 -35591677 - MIRc SINE MIR -118 150 82 1 1817 447 181 17 8 chr1 161605054 161605171 -35590261 + GA-rich Low_complexity Low_complexity 3 120 0 1 1817 413 267 33 40 chr1 161606238 161606390 -35589042 - MLT1B LTR MaLR -6 461 311 1 1817 429 136 9 19 chr1 161606498 161606603 -35588829 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1817 469 274 85 36 chr1 161606606 161606829 -35588603 - MLT1B LTR MaLR -156 234 1 1 1817 258 306 0 0 chr1 161606955 161607027 -35588405 - RSINE1 SINE B4 -64 101 30 1 1817 4434 58 20 0 chr1 161607120 161607675 -35587757 - L1_Mus3 LINE L1 -14 6624 6059 1 1817 419 245 20 0 chr1 161609303 161609405 -35586027 - MARNA DNA Mariner -351 235 132 1 1817 3977 76 44 9 chr1 161609964 161610511 -35584921 + L1Md_F2 LINE L1 6017 6582 0 1 1817 210 118 0 0 chr1 161611119 161611153 -35584279 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 1 1817 342 0 0 0 chr1 161611160 161611198 -35584234 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 1 1817 308 134 75 0 chr1 161611346 161611413 -35584019 - Lx9 LINE L1 -2 7642 7571 1 1818 299 206 14 0 chr1 161612408 161612481 -35582951 - MIRc SINE MIR -120 148 75 1 1818 1227 270 21 34 chr1 161612956 161613339 -35582093 + MTE2a LTR MaLR 2 379 0 1 1818 182 128 26 0 chr1 161613427 161613466 -35581966 + (CAAT)n Simple_repeat Simple_repeat 4 43 0 1 1818 303 93 0 0 chr1 161614088 161614131 -35581301 + (GGA)n Simple_repeat Simple_repeat 2 44 0 1 1818 24 0 0 0 chr1 161615371 161615395 -35580037 + AT_rich Low_complexity Low_complexity 1 24 0 1 1818 22 35 0 0 chr1 161615642 161615671 -35579761 + AT_rich Low_complexity Low_complexity 1 29 0 1 1818 357 43 0 0 chr1 161616018 161616065 -35579367 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1818 635 276 142 21 chr1 161618055 161618288 -35577144 - ORR1E-int LTR MaLR -1319 261 1 1 1818 615 307 45 101 chr1 161618290 161618648 -35576784 - ORR1E LTR MaLR 0 359 22 1 1818 3419 95 8 0 chr1 161621083 161621557 -35573875 - L1_Mm LINE L1 -1241 4642 4165 1 1818 898 93 0 67 chr1 161621557 161621706 -35573726 + L1_Mus1 LINE L1 6429 6567 0 1 1818 189 0 0 0 chr1 161621741 161621762 -35573670 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 1 1818 1043 184 102 5 chr1 161622209 161622406 -35573026 - B3 SINE B2 0 216 1 1 1818 717 259 41 148 chr1 161622777 161623121 -35572311 - MTEa LTR MaLR -72 307 1 1 1818 603 27 0 0 chr1 161624368 161624441 -35570991 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1818 208 204 20 39 chr1 161627428 161627479 -35567953 + CT-rich Low_complexity Low_complexity 3 52 0 1 1818 540 0 0 0 chr1 161627479 161627539 -35567893 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1818 487 357 135 36 chr1 161629357 161630508 -35564924 + L3 LINE CR1 2502 3765 -724 1 1818 433 249 56 90 chr1 161630760 161630946 -35564486 + L1M5 LINE L1 5642 5823 -360 1 1818 280 289 0 0 chr1 161631267 161631350 -35564082 - L1MB5 LINE L1 -19 6155 6073 1 1818 769 272 113 20 chr1 161631398 161631698 -35563734 - L1MC1 LINE L1 -4 6329 6002 1 1818 251 341 117 15 chr1 161631745 161631882 -35563550 + L3 LINE CR1 4135 4285 -204 1 1818 28 48 0 0 chr1 161632150 161632192 -35563240 + AT_rich Low_complexity Low_complexity 1 42 0 1 1818 747 0 0 0 chr1 161632211 161632294 -35563138 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1818 180 0 0 0 chr1 161633317 161633337 -35562095 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1818 627 51 0 0 chr1 161634062 161634141 -35561291 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1 1818 238 111 23 58 chr1 161634226 161634312 -35561120 + (TTG)n Simple_repeat Simple_repeat 3 85 0 1 1818 325 304 36 15 chr1 161634312 161634449 -35560983 - B1F SINE Alu 0 149 10 1 1818 992 300 127 52 chr1 161636992 161637909 -35557523 - HAL1 LINE L1 -31 2476 1484 1 1818 357 109 0 0 chr1 161637909 161637964 -35557468 + (TTG)n Simple_repeat Simple_repeat 1 55 0 1 1818 292 299 13 0 chr1 161637965 161638042 -35557390 - ID2 SINE ID -3 80 3 1 1818 992 300 127 52 chr1 161638042 161638205 -35557227 - HAL1 LINE L1 -1024 1483 1312 1 1818 440 225 0 35 chr1 161638228 161638250 -35557182 - PB1D9 SINE Alu 0 120 99 1 1818 867 51 0 0 chr1 161638250 161638367 -35557065 + (GA)n Simple_repeat Simple_repeat 1 117 0 1 1818 440 225 0 35 chr1 161638367 161638459 -35556973 - PB1D9 SINE Alu -22 98 11 1 1818 40684 24 0 6 chr1 161638598 161644771 -35550661 - L1Md_T LINE L1 -1 6581 452 1 1818 375 314 213 0 chr1 161645639 161645846 -35549586 - MLT1E1A LTR MaLR -6 674 424 1 1818 575 99 10 0 chr1 161648848 161648949 -35546483 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1818 459 304 42 24 chr1 161649430 161649595 -35545837 + MIRb SINE MIR 70 237 -31 1 1818 370 304 157 0 chr1 161649837 161650041 -35545391 + L2b LINE L2 1910 2145 -1274 1 1818 585 0 0 0 chr1 161650173 161650238 -35545194 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1818 180 0 0 0 chr1 161650251 161650271 -35545161 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1818 2052 191 59 0 chr1 161650914 161651286 -35544146 - ORR1B1 LTR MaLR 0 394 1 1 1818 288 136 288 0 chr1 161651286 161651352 -35544080 - ORR1B1-int LTR MaLR 0 1509 1425 1 1818 1803 153 40 40 chr1 161651362 161651715 -35543717 - MTB_Mm LTR MaLR -54 353 1 1 1818 281 345 34 48 chr1 161651954 161652100 -35543332 - ORR1E LTR MaLR -215 144 1 1 1818 208 345 89 40 chr1 161652670 161652794 -35542638 + L2b LINE L2 3246 3375 0 1 1818 498 75 0 0 chr1 161653842 161653909 -35541523 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1818 258 104 30 0 chr1 161655173 161655218 -35540214 + PB1D9 SINE Alu 8 55 -94 1 1818 211 207 49 49 chr1 161655218 161655231 -35540201 + B4A SINE B4 93 150 -142 1 1818 196 53 26 26 chr1 161655238 161655277 -35540155 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1818 645 49 0 0 chr1 161655494 161655575 -35539857 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1818 522 31 0 0 chr1 161656367 161656431 -35539001 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1818 342 0 0 0 chr1 161657631 161657669 -35537763 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 1 1818 667 245 109 5 chr1 161658119 161658312 -35537120 - B3 SINE B2 -3 213 1 1 1818 213 310 48 29 chr1 161659685 161659788 -35535644 + MIR SINE MIR 44 148 -114 1 1818 309 209 0 0 chr1 161660324 161660391 -35535041 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1818 1483 226 16 6 chr1 161660391 161660756 -35534676 - Charlie4a DNA MER1_type -97 411 43 1 1818 195 69 0 0 chr1 161660857 161660886 -35534546 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1818 198 308 88 0 chr1 161662437 161662528 -35532904 - MIRb SINE MIR -44 224 126 1 1818 1402 258 16 14 chr1 161662549 161662915 -35532517 - MTEb LTR MaLR -12 367 1 1 1818 556 232 54 98 chr1 161662915 161662937 -35532495 - B4 SINE B4 -54 238 217 1 1818 591 27 0 0 chr1 161662937 161663010 -35532422 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1818 1034 16 0 0 chr1 161663011 161663140 -35532292 - B1_Mus2 SINE Alu -12 135 7 1 1818 608 169 39 53 chr1 161663140 161663192 -35532240 - ID_B1 SINE B4 -76 215 44 1 1818 413 254 146 0 chr1 161663373 161663503 -35531929 + MLT1F1 LTR MaLR 116 264 -305 1 1818 237 306 178 33 chr1 161663541 161663693 -35531739 + MLT1F1 LTR MaLR 346 519 -50 1 1818 225 0 0 0 chr1 161664623 161664648 -35530784 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1818 180 0 0 0 chr1 161664655 161664675 -35530757 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1818 452 18 18 0 chr1 161673379 161673436 -35521996 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1818 465 34 0 0 chr1 161673436 161673494 -35521938 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1818 1235 281 41 0 chr1 161674362 161674754 -35520678 - L1MA5 LINE L1 -13 6287 5880 2 1818 391 294 79 53 chr1 161675907 161676097 -35519335 - MIR SINE MIR -55 207 13 2 1818 435 307 10 0 chr1 161676697 161676798 -35518634 + RSINE1 SINE B4 3 104 -61 2 1818 263 185 76 0 chr1 161677992 161678084 -35517348 + (TCTA)n Simple_repeat Simple_repeat 1 99 0 2 1818 218 385 43 56 chr1 161680488 161680810 -35514622 + L2c LINE L2 3069 3386 -1 2 1818 778 274 65 2 chr1 161681464 161681719 -35513713 - MLT1D LTR MaLR 0 505 252 2 1818 197 364 50 0 chr1 161681949 161682048 -35513384 + MER5A DNA MER1_type 2 105 -84 2 1818 396 0 0 0 chr1 161682081 161682125 -35513307 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1818 229 294 0 0 chr1 161682217 161682268 -35513164 - LTR79 LTR ERVL -11 516 466 2 1818 611 290 14 0 chr1 161683096 161683234 -35512198 - RSINE1 SINE B4 -24 141 2 2 1818 407 126 27 34 chr1 161683257 161683405 -35512027 + (TTTG)n Simple_repeat Simple_repeat 3 149 0 2 1818 1196 48 7 0 chr1 161683405 161683551 -35511881 - B1_Mus2 SINE Alu 0 147 1 2 1818 279 91 12 83 chr1 161685112 161685196 -35510236 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 2 1818 980 290 63 6 chr1 161685272 161685588 -35509844 - Tigger7 DNA MER2_type -2143 348 15 2 1818 387 0 0 0 chr1 161686110 161686153 -35509279 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1818 204 40 0 0 chr1 161686388 161686413 -35509019 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1818 371 246 0 14 chr1 161686413 161686487 -35508945 - ID4 SINE ID -5 78 6 2 1818 27 0 0 0 chr1 161686642 161686669 -35508763 + AT_rich Low_complexity Low_complexity 1 27 0 2 1818 249 169 0 0 chr1 161686701 161686760 -35508672 + GA-rich Low_complexity Low_complexity 2 60 0 2 1818 1092 106 0 3 chr1 161687535 161687876 -35507556 + (TG)n Simple_repeat Simple_repeat 1 340 0 2 1818 1143 110 0 0 chr1 161687896 161688255 -35507177 + (TG)n Simple_repeat Simple_repeat 1 359 0 2 1818 340 359 84 0 chr1 161688375 161688517 -35506915 - B4A SINE B4 -138 154 1 2 1818 227 337 12 12 chr1 161688799 161688883 -35506549 - MLT1F2 LTR MaLR -166 394 311 2 1818 339 89 0 0 chr1 161688943 161688999 -35506433 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1818 1234 180 103 15 chr1 161689019 161689290 -35506142 - Lx LINE L1 -12 6642 6348 2 1818 295 301 152 14 chr1 161689327 161689465 -35505967 - MLT1F2 LTR MaLR -381 179 23 2 1818 412 323 15 0 chr1 161689767 161689900 -35505532 - MER5A1 DNA MER1_type -31 135 1 2 1818 698 276 90 8 chr1 161690601 161690857 -35504575 + RMER15 LTR ERVL 299 575 0 2 1818 228 35 0 0 chr1 161690954 161690983 -35504449 + (CTTA)n Simple_repeat Simple_repeat 4 32 0 2 1818 944 275 71 39 chr1 161691688 161692025 -35503407 - MLT1B LTR MaLR 0 390 43 2 1818 2095 138 236 0 chr1 161692932 161693086 -35502346 - RMER6C LTR ERVK -134 556 360 2 1818 498 46 0 0 chr1 161693086 161693151 -35502281 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1818 2095 138 236 0 chr1 161693151 161693446 -35501986 - RMER6C LTR ERVK -331 359 2 2 1818 635 296 78 0 chr1 161693457 161693663 -35501769 + ID_B1 SINE B4 2 223 -1 2 1818 542 360 40 0 chr1 161695183 161695411 -35500021 - LTR16A LTR ERVL -14 437 201 2 1818 380 198 21 52 chr1 161695821 161695917 -35499515 + MTEa LTR MaLR 275 367 -12 2 1818 259 323 11 0 chr1 161696051 161696144 -35499288 + MER5B DNA MER1_type 1 94 -84 2 1818 1167 331 70 80 chr1 161696556 161697232 -35498200 - MLT1E1A LTR MaLR -3 677 9 2 1818 573 42 0 0 chr1 161697994 161698066 -35497366 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1818 327 243 0 28 chr1 161699105 161699177 -35496255 + ID SINE ID 1 70 -154 2 1818 486 0 0 0 chr1 161699177 161699231 -35496201 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1818 246 304 28 9 chr1 161700870 161701006 -35494426 + MIRm SINE MIR 46 189 -79 2 1818 213 344 0 20 chr1 161702403 161702501 -35492931 - L2c LINE L2 0 3387 3292 2 1818 625 175 9 9 chr1 161705031 161705146 -35490286 - PB1D10 SINE Alu -2 115 1 2 1818 254 280 126 53 chr1 161705931 161706082 -35489350 + MIRc SINE MIR 9 170 -98 2 1818 23 0 0 0 chr1 161706150 161706173 -35489259 + AT_rich Low_complexity Low_complexity 1 23 0 2 1818 857 185 6 0 chr1 161706253 161706431 -35489001 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1818 279 0 0 0 chr1 161707595 161707626 -35487806 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2 1818 455 233 69 0 chr1 161708481 161708597 -35486835 + RSINE1 SINE B4 1 124 -41 2 1818 525 80 0 0 chr1 161708597 161708672 -35486760 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1818 27 73 0 0 chr1 161708674 161708729 -35486703 + AT_rich Low_complexity Low_complexity 1 55 0 2 1818 511 85 24 0 chr1 161708941 161709023 -35486409 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1818 365 333 0 0 chr1 161709167 161709281 -35486151 + MIR SINE MIR 149 262 0 2 1818 1275 156 32 9 chr1 161710902 161711122 -35484310 + URR1B DNA MER1_type 1 225 0 2 1818 1580 235 56 139 chr1 161711449 161712053 -35483379 + RLTR1D LTR ERV1 52 605 0 2 1818 226 23 139 0 chr1 161714321 161714364 -35481068 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 2 1818 3811 61 0 14 chr1 161714392 161714878 -35480554 - L1Md_F2 LINE L1 -6 6576 6098 2 1818 575 57 0 0 chr1 161714903 161714973 -35480459 - L1Md_F2 LINE L1 -415 6167 6098 2 1818 453 241 144 12 chr1 161715398 161715558 -35479874 - L1MA5 LINE L1 0 6300 6120 2 1818 337 240 40 40 chr1 161716299 161716425 -35479007 - MLT1A1 LTR MaLR 0 408 283 2 1818 2082 181 12 53 chr1 161716759 161717049 -35478383 + RMER20B LTR ERVK 1 277 -350 2 1818 5585 76 104 1 chr1 161717049 161717829 -35477603 + L1_Mus4 LINE L1 5776 6635 -1 2 1818 2082 181 12 53 chr1 161717829 161717969 -35477463 + RMER20B LTR ERVK 278 413 -214 2 1818 437 245 0 9 chr1 161717996 161718103 -35477329 + RMER20B LTR ERVK 511 616 -11 2 1818 198 231 0 0 chr1 161718419 161718458 -35476974 - MIRm SINE MIR -141 135 97 2 1818 1285 188 210 7 chr1 161721244 161721549 -35473883 + ORR1B2 LTR MaLR 1 367 0 2 1818 347 170 1 1 chr1 161722073 161722142 -35473290 - MLT1B LTR MaLR -17 373 312 2 1818 410 115 0 55 chr1 161723191 161723214 -35472218 + (TAG)n Simple_repeat Simple_repeat 1 23 0 2 1818 616 75 0 56 chr1 161723214 161723356 -35472076 + (TG)n Simple_repeat Simple_repeat 2 135 0 2 1818 410 115 0 55 chr1 161723356 161723391 -35472041 + (TAG)n Simple_repeat Simple_repeat 3 34 0 2 1818 339 25 0 0 chr1 161723391 161723431 -35472001 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1818 410 115 0 55 chr1 161723431 161723481 -35471951 + (TAG)n Simple_repeat Simple_repeat 2 48 0 2 1818 387 41 0 0 chr1 161723481 161723530 -35471902 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1818 342 0 0 0 chr1 161723538 161723576 -35471856 + (TAG)n Simple_repeat Simple_repeat 1 38 0 2 1818 282 29 0 0 chr1 161723610 161723645 -35471787 + (TAG)n Simple_repeat Simple_repeat 1 35 0 2 1818 246 75 75 0 chr1 161723645 161723698 -35471734 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2 1818 219 36 0 0 chr1 161724332 161724360 -35471072 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1818 199 292 30 15 chr1 161725849 161725915 -35469517 + L2c LINE L2 3260 3326 -61 2 1818 209 366 9 38 chr1 161726855 161726960 -35468472 - MIRb SINE MIR -64 204 103 2 1818 286 328 48 8 chr1 161729730 161729856 -35465576 - MIRb SINE MIR -69 199 69 2 1818 428 278 8 50 chr1 161729886 161730007 -35465425 - PB1D10 SINE Alu 0 117 2 2 1818 23 0 0 0 chr1 161731013 161731036 -35464396 + AT_rich Low_complexity Low_complexity 1 23 0 2 1818 337 346 22 27 chr1 161732394 161732617 -35462815 - MIRb SINE MIR -14 254 33 2 1818 263 309 0 39 chr1 161733533 161733661 -35461771 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 2 1818 307 327 65 36 chr1 161733751 161733919 -35461513 + MIRb SINE MIR 38 210 -58 2 1818 214 433 0 0 chr1 161734938 161735109 -35460323 + (TGG)n Simple_repeat Simple_repeat 3 173 0 2 1818 832 302 62 19 chr1 161735773 161736030 -35459402 + Lx8 LINE L1 6535 6802 -671 2 1818 506 273 30 42 chr1 161736031 161736199 -35459233 + ORR1E LTR MaLR 27 192 -167 2 1818 249 330 76 34 chr1 161736257 161736376 -35459056 + ORR1E LTR MaLR 256 379 0 2 1818 186 303 46 92 chr1 161736454 161736563 -35458869 - MIRb SINE MIR -39 229 126 2 1818 27 49 0 0 chr1 161736780 161736821 -35458611 + AT_rich Low_complexity Low_complexity 1 41 0 2 1818 418 370 84 16 chr1 161737890 161738269 -35457163 - L2a LINE L2 -5 3421 3017 2 1818 323 296 55 23 chr1 161738372 161738500 -35456932 + MER94 DNA AcHobo 2 133 -1 2 1818 352 289 9 19 chr1 161738652 161738758 -35456674 + CT-rich Low_complexity Low_complexity 4 108 0 2 1818 428 296 63 0 chr1 161738913 161739072 -35456360 - L1MB3 LINE L1 0 6183 6015 2 1818 231 345 133 28 chr1 161739239 161739573 -35455859 + L2a LINE L2 2795 3165 -261 2 1818 262 118 19 25 chr1 161741062 161741124 -35454308 - L2b LINE L2 -5 3382 3321 2 1818 195 276 0 0 chr1 161742331 161742407 -35453025 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1819 180 152 0 0 chr1 161743180 161743213 -35452219 + C-rich Low_complexity Low_complexity 1 33 0 2 1819 268 298 26 21 chr1 161743273 161743395 -35452037 - MIRb SINE MIR -10 252 134 2 1819 574 177 8 8 chr1 161743581 161743706 -35451726 + GA-rich Low_complexity Low_complexity 1 125 0 2 1819 482 263 124 42 chr1 161743868 161744024 -35451408 + B4 SINE B4 32 213 -79 2 1819 486 0 0 0 chr1 161744024 161744078 -35451354 + (TAA)n Simple_repeat Simple_repeat 3 56 0 2 1819 482 258 104 57 chr1 161744078 161744156 -35451276 + B4 SINE B4 214 291 -1 2 1819 415 381 17 6 chr1 161744281 161744458 -35450974 + ORR1E LTR MaLR 1 179 -180 2 1819 287 252 6 19 chr1 161744986 161745148 -35450284 + (CA)n Simple_repeat Simple_repeat 1 160 0 2 1819 986 256 29 11 chr1 161745284 161745560 -35449872 - B4A SINE B4 -4 288 8 2 1819 432 55 0 0 chr1 161748258 161748313 -35447119 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1819 307 17 66 16 chr1 161750006 161750067 -35445365 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 3 1819 323 23 0 22 chr1 161750324 161750369 -35445063 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1819 873 251 5 20 chr1 161750700 161750899 -35444533 + ID_B1 SINE B4 16 211 -13 3 1819 1165 14 14 0 chr1 161750900 161751043 -35444389 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 3 1819 237 33 0 0 chr1 161751065 161751095 -35444337 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 3 1819 420 259 80 27 chr1 161751100 161751341 -35444091 + MTEa LTR MaLR 17 363 -16 3 1819 481 305 57 41 chr1 161751595 161751841 -35443591 + L2 LINE L2 1984 2233 -1186 3 1819 210 118 0 0 chr1 161752401 161752435 -35442997 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1819 506 342 35 48 chr1 161753093 161753382 -35442050 - MLT1J LTR MaLR -3 509 225 3 1819 264 122 0 0 chr1 161753694 161753735 -35441697 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1819 256 269 37 9 chr1 161753741 161753850 -35441582 + GA-rich Low_complexity Low_complexity 3 114 0 3 1819 212 29 86 0 chr1 161753982 161754017 -35441415 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1819 761 203 33 18 chr1 161754729 161754946 -35440486 + MTD LTR MaLR 1 421 0 3 1819 187 325 216 16 chr1 161755976 161756101 -35439331 - MIR SINE MIR -107 155 6 3 1819 351 312 55 18 chr1 161756847 161757010 -35438422 + MIRc SINE MIR 86 254 -14 3 1819 742 221 0 58 chr1 161757272 161757445 -35437987 + RSINE1 SINE B4 3 165 0 3 1819 308 263 8 109 chr1 161758022 161758150 -35437282 + MER33 DNA MER1_type 209 323 -1 3 1819 1257 41 0 0 chr1 161758486 161758633 -35436799 + B1_Mm SINE Alu 1 147 0 3 1819 21 0 0 0 chr1 161759134 161759155 -35436277 + AT_rich Low_complexity Low_complexity 1 21 0 3 1819 3446 40 0 0 chr1 161759586 161759982 -35435450 - MTA_Mm LTR MaLR 0 396 1 3 1819 980 260 23 62 chr1 161760428 161760817 -35434615 - Lx9 LINE L1 -1 7643 7270 3 1819 843 194 141 36 chr1 161760814 161761175 -35434257 - Lx9 LINE L1 -548 7096 6698 3 1819 879 212 89 11 chr1 161761176 161761367 -35434065 - Lx9 LINE L1 -1081 6563 6358 3 1819 432 51 0 0 chr1 161762052 161762111 -35433321 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1819 351 0 0 0 chr1 161762385 161762424 -35433008 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1819 348 280 167 38 chr1 161762770 161763101 -35432331 - MLT1A LTR MaLR 0 408 1 3 1819 198 261 129 73 chr1 161763770 161763894 -35431538 - MIRc SINE MIR -119 149 19 3 1819 261 303 78 73 chr1 161764711 161764903 -35430529 + MIR SINE MIR 31 223 -45 3 1819 431 248 23 15 chr1 161767838 161767969 -35427463 - L1MA4 LINE L1 -367 5933 5802 3 1819 296 242 0 16 chr1 161769261 161769324 -35426108 + L2c LINE L2 3259 3320 -67 3 1819 201 273 143 0 chr1 161769453 161769530 -35425902 + L3b LINE CR1 114 201 -281 3 1819 241 257 277 0 chr1 161769778 161769879 -35425553 + MIRc SINE MIR 131 259 -9 3 1819 1374 57 0 0 chr1 161771037 161771213 -35424219 + (GGGAA)n Simple_repeat Simple_repeat 1 176 0 3 1819 281 155 17 0 chr1 161771219 161771277 -35424155 + GA-rich Low_complexity Low_complexity 3 61 0 3 1819 191 204 0 20 chr1 161771311 161771361 -35424071 + CT-rich Low_complexity Low_complexity 2 50 0 3 1819 567 329 16 40 chr1 161772044 161772297 -35423135 - MLT1A0 LTR MaLR -16 349 103 3 1819 230 275 141 13 chr1 161773390 161773503 -35421929 + MIRc SINE MIR 12 141 -67 3 1819 553 16 0 0 chr1 161773503 161773566 -35421866 + (GAA)n Simple_repeat Simple_repeat 2 64 0 3 1819 897 180 0 0 chr1 161773566 161773738 -35421694 + GA-rich Low_complexity Low_complexity 3 174 0 3 1819 439 340 0 31 chr1 161773989 161774150 -35421282 + MLT1C LTR MaLR 3 158 -309 3 1819 817 180 6 6 chr1 161774764 161774937 -35420495 + CT-rich Low_complexity Low_complexity 3 175 0 3 1819 224 306 141 10 chr1 161775366 161775465 -35419967 + MIR SINE MIR 38 149 -59 3 1819 291 215 0 0 chr1 161775465 161775530 -35419902 + GA-rich Low_complexity Low_complexity 2 66 0 3 1819 272 292 42 0 chr1 161775539 161775611 -35419821 - MLT1A0 LTR MaLR -325 86 12 3 1819 251 378 60 25 chr1 161775866 161776151 -35419281 + L2a LINE L2 2960 3254 -172 3 1819 21 71 0 0 chr1 161776211 161776253 -35419179 + AT_rich Low_complexity Low_complexity 1 42 0 3 1819 187 289 19 0 chr1 161776304 161776356 -35419076 + L2a LINE L2 3320 3372 -3 3 1819 282 289 113 9 chr1 161777391 161777506 -35417926 - MIR SINE MIR -98 164 38 3 1819 238 274 0 0 chr1 161777758 161777820 -35417612 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 3 1819 463 329 0 28 chr1 161778145 161778289 -35417143 - ID_B1 SINE B4 -5 219 80 3 1819 192 312 15 15 chr1 161778313 161778378 -35417054 + MIR SINE MIR 8 72 -190 3 1819 295 252 136 7 chr1 161779195 161779335 -35416097 - MTEb LTR MaLR -21 358 201 3 1819 2181 165 41 0 chr1 161779365 161779734 -35415698 - ORR1C2 LTR MaLR 0 384 1 3 1819 489 17 0 0 chr1 161781247 161781305 -35414127 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1819 408 276 23 23 chr1 161786400 161786530 -35408902 + MIR SINE MIR 114 243 -19 3 1819 242 278 32 53 chr1 161786653 161786748 -35408684 + B1F1 SINE Alu 5 97 -52 3 1819 1015 299 63 29 chr1 161787720 161788133 -35407299 - MER63B DNA AcHobo -2 434 8 3 1819 531 0 0 0 chr1 161790519 161790578 -35404854 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1819 258 143 0 0 chr1 161792953 161793002 -35402430 + (TAGG)n Simple_repeat Simple_repeat 2 50 0 3 1819 347 38 0 37 chr1 161793111 161793165 -35402267 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 3 1819 322 162 27 0 chr1 161793340 161793414 -35402018 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1819 207 269 0 0 chr1 161795700 161795752 -35399680 + A-rich Low_complexity Low_complexity 4 55 0 3 1819 198 0 0 0 chr1 161796203 161796225 -35399207 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1819 313 102 39 48 chr1 161796933 161797036 -35398396 + CT-rich Low_complexity Low_complexity 3 104 0 3 1819 657 0 0 0 chr1 161797246 161797319 -35398113 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 3 1819 267 103 0 0 chr1 161797323 161797362 -35398070 + (GGGAGA)n Simple_repeat Simple_repeat 5 43 0 3 1819 1020 119 11 6 chr1 161797363 161797541 -35397891 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 3 1819 180 0 0 0 chr1 161798491 161798511 -35396921 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1819 210 290 82 20 chr1 161798625 161798734 -35396698 + MIRb SINE MIR 38 152 -56 3 1819 256 320 46 39 chr1 161798814 161798944 -35396488 - MER91B DNA Tip100 -40 150 20 3 1819 414 0 0 0 chr1 161800152 161800198 -35395234 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1819 407 260 177 34 chr1 161801108 161801290 -35394142 + MLT1B LTR MaLR 36 240 -227 3 1819 228 286 75 21 chr1 161801669 161801762 -35393670 - L2a LINE L2 0 3426 3329 3 1819 263 336 93 21 chr1 161801904 161802044 -35393388 - L2a LINE L2 -276 3150 3001 3 1819 1002 265 125 26 chr1 161802574 161802919 -35392513 + MTEa LTR MaLR 1 379 0 3 1819 201 212 99 70 chr1 161803717 161803788 -35391644 - MIRb SINE MIR -185 83 11 3 1819 250 345 45 9 chr1 161805003 161805114 -35390318 + L2a LINE L2 3312 3426 0 3 1819 335 148 77 33 chr1 161805257 161805354 -35390078 - PB1D10 SINE Alu -7 110 15 3 1819 247 294 97 8 chr1 161806262 161806386 -35389046 - MIRb SINE MIR -102 166 25 3 1819 270 0 0 0 chr1 161806569 161806599 -35388833 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1819 1506 199 45 7 chr1 161807085 161807373 -35388059 - Lx6 LINE L1 -177 7283 6985 3 1819 843 105 0 0 chr1 161809575 161809699 -35385733 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 3 1819 208 331 112 7 chr1 161812047 161812190 -35383242 - MIRb SINE MIR -79 189 32 3 1819 405 131 0 0 chr1 161812641 161812725 -35382707 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 1819 662 286 126 31 chr1 161812811 161813201 -35382231 + MLT1C LTR MaLR 39 465 -2 3 1819 1025 289 93 53 chr1 161813461 161813947 -35381485 + MLT1D LTR MaLR 1 505 0 3 1819 520 14 29 0 chr1 161814793 161814862 -35380570 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1819 550 267 8 0 chr1 161816015 161816135 -35379297 + ID_B1 SINE B4 84 204 -20 3 1819 267 31 0 0 chr1 161816137 161816169 -35379263 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 3 1819 239 0 0 31 chr1 161821521 161821553 -35373879 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 3 1819 632 136 0 19 chr1 161822777 161822882 -35372550 + B1_Mus2 SINE Alu 44 146 -1 3 1819 192 331 79 29 chr1 161823694 161823834 -35371598 - L2a LINE L2 0 3426 3280 3 1819 248 326 0 0 chr1 161824289 161824375 -35371057 + L3 LINE CR1 3536 3621 -868 3 1819 180 0 0 0 chr1 161824931 161824951 -35370481 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 1819 1916 44 0 0 chr1 161826530 161826759 -35368673 - L1Md_F2 LINE L1 -12 6570 6342 3 1819 357 197 0 0 chr1 161827727 161827788 -35367644 + tRNA-Ala-GCY_ tRNA tRNA 8 68 -7 3 1819 441 0 0 0 chr1 161827790 161827839 -35367593 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1819 405 0 0 0 chr1 161827839 161827883 -35367549 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1819 297 305 12 24 chr1 161827883 161827902 -35367530 + ID_B1 SINE B4 78 95 -129 3 1819 225 0 0 0 chr1 161828655 161828680 -35366752 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 3 1819 21 0 0 0 chr1 161828681 161828702 -35366730 + AT_rich Low_complexity Low_complexity 1 21 0 3 1819 372 0 19 0 chr1 161828703 161828755 -35366677 - L1Md_T LINE L1 0 6582 6530 3 1819 437 194 39 6 chr1 161829512 161829668 -35365764 + GA-rich Low_complexity Low_complexity 2 162 0 3 1819 230 57 18 54 chr1 161830054 161830110 -35365322 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1819 516 128 0 31 chr1 161830787 161830884 -35364548 - Lx6 LINE L1 0 7460 7367 3 1819 180 77 0 0 chr1 161831743 161831769 -35363663 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 4 1819 582 28 0 0 chr1 161831799 161831871 -35363561 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1819 357 293 154 60 chr1 161832294 161832780 -35362652 - L1ME5 LINE L1 -359 5835 5304 4 1819 360 331 62 22 chr1 161833284 161833654 -35361778 - L1M5 LINE L1 -1538 4608 4224 4 1819 548 287 65 32 chr1 161833655 161833871 -35361561 + B4A SINE B4 1 223 -69 4 1819 779 194 7 34 chr1 161834550 161834699 -35360733 - B1_Mur2 SINE Alu -4 145 1 4 1819 180 176 0 0 chr1 161834808 161834842 -35360590 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1819 851 231 138 28 chr1 161834884 161835138 -35360294 - B4A SINE B4 -10 282 1 4 1819 382 325 32 67 chr1 161835868 161836211 -35359221 - L1MD LINE L1 -2459 3687 3357 4 1819 1004 186 129 0 chr1 161836308 161836502 -35358930 + URR1A DNA MER1_type 5 223 -3 4 1819 317 330 0 11 chr1 161836673 161836768 -35358664 - L2a LINE L2 -7 3419 3326 4 1819 256 323 0 0 chr1 161836798 161836860 -35358572 - MT2A LTR ERVL -85 448 387 4 1819 1252 100 61 0 chr1 161836868 161837048 -35358384 - B2_Mm2 SINE B2 -3 192 2 4 1819 1200 62 0 0 chr1 161837097 161837242 -35358190 + B1_Mus2 SINE Alu 3 147 0 4 1819 201 154 0 0 chr1 161837244 161837283 -35358149 + A-rich Low_complexity Low_complexity 1 39 0 4 1819 211 340 113 0 chr1 161837858 161837955 -35357477 + MamSINE1 SINE tRNA 51 158 -132 4 1819 252 0 0 0 chr1 161838442 161838470 -35356962 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1819 660 26 0 0 chr1 161838853 161838931 -35356501 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1819 210 71 0 0 chr1 161838939 161838967 -35356465 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1819 633 216 179 6 chr1 161840593 161840761 -35354671 - B3A SINE B2 0 198 2 4 1819 1994 94 95 81 chr1 161842172 161842531 -35352901 + Lx LINE L1 6291 6654 0 4 1819 671 226 18 48 chr1 161842555 161842722 -35352710 + RSINE1 SINE B4 2 163 -2 4 1819 950 271 114 19 chr1 161843111 161843479 -35351953 - MTD LTR MaLR -15 404 2 4 1819 240 278 57 86 chr1 161846278 161846487 -35348945 - MER113 DNA MER1_type -26 495 293 4 1819 774 189 0 0 chr1 161846875 161847055 -35348377 + GA-rich Low_complexity Low_complexity 1 180 0 4 1819 498 313 63 33 chr1 161847208 161847531 -35347901 - LTR16A1 LTR ERVL -5 451 117 4 1819 341 269 25 25 chr1 161848229 161848347 -35347085 - Tigger5 DNA MER2_type -1 2405 2288 4 1819 355 316 11 0 chr1 161851357 161851452 -35343980 + PB1D10 SINE Alu 1 96 -21 4 1819 291 319 0 32 chr1 161851459 161851582 -35343850 + GA-rich Low_complexity Low_complexity 3 121 0 4 1819 248 318 30 30 chr1 161856136 161856269 -35339163 + MIR3 SINE MIR 66 198 -10 4 1819 1050 77 27 5 chr1 161856413 161856635 -35338797 + (CA)n Simple_repeat Simple_repeat 1 226 0 4 1819 200 367 31 15 chr1 161859789 161859919 -35335513 - MIR3 SINE MIR -21 187 56 4 1819 324 289 116 39 chr1 161859975 161860130 -35335302 - MIRb SINE MIR -19 249 83 4 1819 315 0 0 0 chr1 161861267 161861302 -35334130 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1819 536 280 26 93 chr1 161863993 161864186 -35331246 + B3A SINE B2 3 182 -16 4 1819 444 19 0 0 chr1 161864191 161864244 -35331188 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1819 633 272 62 28 chr1 161864426 161864483 -35330949 - MLT2B3 LTR ERVL -7 547 490 4 1819 324 0 0 0 chr1 161864483 161864519 -35330913 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 4 1819 633 288 107 61 chr1 161864519 161864913 -35330519 - MLT2B3 LTR ERVL -61 506 3 4 1819 2042 98 35 89 chr1 161865895 161866243 -35329189 - ORR1A4 LTR MaLR 0 329 1 4 1819 207 0 0 0 chr1 161866319 161866342 -35329090 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1819 474 252 27 47 chr1 161866413 161866591 -35328841 - MER20 DNA MER1_type -21 198 22 4 1819 23 33 0 0 chr1 161866701 161866731 -35328701 + AT_rich Low_complexity Low_complexity 1 30 0 4 1819 931 244 9 14 chr1 161868034 161868246 -35327186 + ID_B1 SINE B4 5 215 -9 4 1819 269 298 124 80 chr1 161868247 161868544 -35326888 + RSINE1 SINE B4 1 291 -1 4 1819 187 330 52 21 chr1 161869957 161870053 -35325379 - L2 LINE L2 -508 2911 2813 4 1819 305 278 0 38 chr1 161870263 161870379 -35325053 + L1VL2 LINE L1 179 276 -6142 4 227 29264 123 14 14 chr1 161870371 161875619 -35319813 + L1Md_F2 LINE L1 332 5585 -298 4 1820 7836 65 11 3 chr1 161875620 161876608 -35318824 + L1Md_F2 LINE L1 5587 6582 0 4 1820 5458 78 3 1 chr1 161876594 161877304 -35318128 + L1_Mus2 LINE L1 5856 6566 0 4 1820 265 203 87 0 chr1 161877402 161877471 -35317961 - L1M4 LINE L1 -3130 3016 2942 4 1820 1027 97 0 88 chr1 161877471 161877652 -35317780 + RMER6C LTR ERVK 1 165 -525 4 1820 1516 126 14 25 chr1 161877724 161878000 -35317432 + RMER6C LTR ERVK 418 690 0 4 1820 750 292 166 51 chr1 161878000 161878739 -35316693 - L1M4 LINE L1 -3199 2947 2124 4 1820 690 168 70 42 chr1 161878799 161878942 -35316490 - B1_Mur1 SINE Alu -2 147 1 4 1820 183 42 0 0 chr1 161879015 161879039 -35316393 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1820 841 165 44 33 chr1 161879107 161879289 -35316143 - RMER1C Other Other -1 1341 1158 4 1820 605 156 37 0 chr1 161879623 161879732 -35315700 + B1_Mur1 SINE Alu 21 133 -16 4 1820 404 200 22 203 chr1 161880438 161880620 -35314812 - MER20 DNA MER1_type -5 214 66 4 1820 473 298 94 14 chr1 161881059 161881303 -35314129 - MER57C2 LTR ERV1 -2 432 144 4 1820 432 270 71 28 chr1 161881633 161881774 -35313658 + B1_Mur3 SINE Alu 3 149 0 4 1820 1892 243 72 56 chr1 161881995 161882142 -35313290 + Charlie1a DNA MER1_type 113 283 -1172 4 1820 683 208 0 69 chr1 161882142 161882302 -35313130 + B1_Mur2 SINE Alu 1 149 0 4 1820 1892 243 72 56 chr1 161882302 161882833 -35312599 + Charlie1a DNA MER1_type 284 802 -653 4 1820 236 320 86 7 chr1 161882837 161882988 -35312444 - L1M5 LINE L1 -826 5320 5158 4 1820 360 0 0 0 chr1 161883138 161883178 -35312254 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1820 372 298 70 18 chr1 161883548 161883719 -35311713 - L1M5 LINE L1 -1559 4587 4408 4 1820 423 244 52 0 chr1 161883735 161883850 -35311582 - LTR40b LTR ERVL -24 438 318 4 1820 323 276 104 33 chr1 161884207 161884477 -35310955 - L1M5 LINE L1 -1780 4366 4078 4 1820 608 169 8 25 chr1 161885163 161885284 -35310148 + PB1D9 SINE Alu 1 119 -1 4 1820 303 314 179 21 chr1 161885292 161885591 -35309841 - L1M5 LINE L1 -3379 2767 2397 4 1820 441 0 0 0 chr1 161885591 161885640 -35309792 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1820 303 314 179 21 chr1 161885640 161885871 -35309561 - L1M5 LINE L1 -3750 2396 2153 4 1820 659 260 96 9 chr1 161885898 161886127 -35309305 - L1MC3 LINE L1 -17 7768 7520 4 1820 366 85 0 0 chr1 161886196 161886255 -35309177 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 4 1820 180 0 0 0 chr1 161886259 161886279 -35309153 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1820 811 242 76 24 chr1 161886279 161886529 -35308903 - B4 SINE B4 -23 269 7 4 1820 1979 284 99 48 chr1 161886534 161887372 -35308060 - L1MC3 LINE L1 -265 7520 6640 4 1820 684 83 0 0 chr1 161887435 161887531 -35307901 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1820 445 342 24 61 chr1 161887537 161887702 -35307730 - B3A SINE B2 -38 160 2 4 1820 825 153 7 14 chr1 161887926 161888072 -35307360 - URR1B DNA MER1_type -46 179 35 4 1820 212 312 65 0 chr1 161888106 161888183 -35307249 + ID4_ SINE ID 2 83 0 4 1820 636 308 150 31 chr1 161888208 161888469 -35306963 + Lx8 LINE L1 7042 7329 -144 4 1820 432 0 0 0 chr1 161888469 161888517 -35306915 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1820 588 65 0 0 chr1 161888517 161888593 -35306839 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1820 572 301 121 43 chr1 161888593 161888611 -35306821 + Lx8 LINE L1 7330 7343 -130 4 1820 198 0 0 0 chr1 161888785 161888807 -35306625 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1820 8132 46 8 0 chr1 161888828 161890443 -35304989 - L1Md_F2 LINE L1 0 6582 4956 4 1820 10288 68 0 66 chr1 161890435 161891934 -35303498 + L1Md_F2 LINE L1 3572 4971 -912 4 1820 345 271 0 0 chr1 161891935 161892020 -35303412 + ID_B1 SINE B4 136 220 -4 4 1820 831 259 165 34 chr1 161892043 161892510 -35302922 - L1MC3 LINE L1 -1554 6231 5704 4 1820 288 254 145 8 chr1 161892677 161892808 -35302624 - L1MD LINE L1 -2516 5479 5331 4 1820 946 316 44 44 chr1 161892809 161892970 -35302462 + MTE2b LTR MaLR 1 170 -209 4 1820 1297 170 9 13 chr1 161892970 161893196 -35302236 - URR1B DNA MER1_type 0 225 1 4 1820 946 316 44 44 chr1 161893196 161893401 -35302031 + MTE2b LTR MaLR 171 367 -12 4 1820 513 232 60 40 chr1 161893559 161893763 -35301669 - B3A SINE B2 0 216 17 4 1820 205 200 0 0 chr1 161894039 161894079 -35301353 + T-rich Low_complexity Low_complexity 1 40 0 4 1820 230 228 18 0 chr1 161894079 161894131 -35301301 - ID_B1 SINE B4 0 224 172 4 1820 1049 239 90 30 chr1 161894131 161894398 -35301034 - ORR1D2 LTR MaLR 0 370 88 4 1820 876 231 30 38 chr1 161894398 161894750 -35300682 + Lx6 LINE L1 5629 6007 -1689 4 1820 258 327 73 91 chr1 161894877 161895207 -35300225 + Lx6 LINE L1 7148 7471 -2 4 1820 307 312 52 69 chr1 161895557 161895863 -35299569 - L1MEg LINE L1 -5139 945 645 4 1820 482 114 0 12 chr1 161895931 161896011 -35299421 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 4 1820 225 154 0 0 chr1 161896353 161896392 -35299040 + GA-rich Low_complexity Low_complexity 3 41 0 4 1820 904 0 29 29 chr1 161896411 161896551 -35298881 + (GAGAA)n Simple_repeat Simple_repeat 3 142 0 4 1820 1299 119 10 0 chr1 161897702 161897895 -35297537 + B2_Mm2 SINE B2 1 195 0 4 1820 558 0 0 0 chr1 161898450 161898512 -35296920 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 4 1820 274 332 120 35 chr1 161899222 161899481 -35295951 + B4A SINE B4 2 282 -10 4 1820 244 293 124 9 chr1 161899582 161899792 -35295640 - Lx7 LINE L1 -16 7680 7447 4 1820 378 0 0 0 chr1 161899804 161899846 -35295586 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1820 2915 18 0 43 chr1 161899901 161900253 -35295179 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1820 57750 15 15 0 chr1 161900253 161906630 -35288802 - IAPEz-int LTR ERVK 0 6481 8 4 1820 2937 15 0 43 chr1 161906630 161906982 -35288450 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1820 2232 250 10 50 chr1 161906982 161907566 -35287866 - Lx7 LINE L1 -488 7208 6648 4 1820 666 311 28 38 chr1 161908620 161908911 -35286521 + Lx8 LINE L1 6549 6836 -637 4 1820 393 22 0 0 chr1 161910435 161910481 -35284951 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1820 829 111 0 31 chr1 161910614 161910744 -35284688 - RLTR25B LTR ERVK -902 126 1 4 1820 193 333 0 0 chr1 161911728 161911782 -35283650 + MIR SINE MIR 42 95 -113 4 1820 240 35 0 0 chr1 161911835 161911864 -35283568 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 5 1820 2808 191 62 40 chr1 161911864 161912446 -35282986 - RMER1B Other Other -10 1056 462 5 1820 326 306 10 52 chr1 161912584 161912712 -35282720 - RMER1A Other Other -840 190 81 5 1820 1466 172 185 11 chr1 161912818 161913196 -35282236 - RMER1B Other Other -616 450 15 5 1820 943 185 53 62 chr1 161914472 161914668 -35280764 - URR1B DNA MER1_type -2 223 30 5 1820 255 31 0 0 chr1 161914668 161914700 -35280732 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1820 943 185 53 62 chr1 161914700 161914728 -35280704 - URR1B DNA MER1_type -196 29 1 5 1820 438 288 87 91 chr1 161914896 161915171 -35280261 + ORR1E LTR MaLR 86 359 0 5 1820 360 0 0 0 chr1 161915488 161915528 -35279904 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1820 405 293 26 8 chr1 161915573 161915690 -35279742 - PB1D7 SINE Alu -1 119 1 5 1820 1127 277 75 31 chr1 161917465 161917946 -35277486 - RMER5 LTR ERV1 0 534 33 5 1820 424 295 64 14 chr1 161918179 161918320 -35277112 + B3A SINE B2 1 148 -50 5 1820 366 91 0 0 chr1 161918320 161918375 -35277057 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1820 269 235 43 86 chr1 161918974 161919067 -35276365 - MLT1A0 LTR MaLR -274 91 3 5 1820 241 303 109 34 chr1 161920262 161920409 -35275023 - MLT1L LTR MaLR -8 602 445 5 1820 2422 96 12 0 chr1 161920593 161920916 -35274516 + ORR1A2 LTR MaLR 1 327 0 5 1820 1086 8 0 0 chr1 161921232 161921355 -35274077 + (GGAGA)n Simple_repeat Simple_repeat 5 127 0 5 1820 921 242 29 14 chr1 161923211 161923421 -35272011 - B3 SINE B2 -3 213 1 5 1820 354 340 7 14 chr1 161924085 161924231 -35271201 - MIRb SINE MIR -73 195 51 5 1820 258 259 35 0 chr1 161924250 161924308 -35271124 + MLT1G LTR MaLR 206 265 -326 5 1820 200 86 29 0 chr1 161924339 161924374 -35271058 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1820 246 62 0 0 chr1 161924529 161924561 -35270871 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 5 1820 300 284 87 10 chr1 161924715 161924818 -35270614 + PB1D10 SINE Alu 1 111 -6 5 1820 1266 193 150 33 chr1 161925791 161926070 -35269362 + ORR1D1 LTR MaLR 3 323 -51 5 1820 3109 75 2 8 chr1 161926070 161926472 -35268960 - MTB LTR MaLR 0 400 1 5 1820 6621 108 21 68 chr1 161926472 161927625 -35267807 - MTB-int LTR MaLR 0 1098 1 5 1820 2679 94 41 13 chr1 161927626 161928014 -35267418 - MTB LTR MaLR -1 399 1 5 1820 1266 193 150 33 chr1 161928014 161928064 -35267368 + ORR1D1 LTR MaLR 324 373 -1 5 1820 509 317 57 47 chr1 161928064 161928382 -35267050 - MTEb LTR MaLR -2 377 57 5 1820 396 0 0 0 chr1 161929145 161929189 -35266243 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1820 420 20 0 0 chr1 161930195 161930244 -35265188 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1820 252 0 0 0 chr1 161930244 161930271 -35265161 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1820 383 121 30 10 chr1 161930640 161930740 -35264692 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 1820 318 152 0 0 chr1 161930755 161930814 -35264618 + CT-rich Low_complexity Low_complexity 2 60 0 5 1820 663 265 65 26 chr1 161930842 161931149 -35264283 - MER44A DNA MER2_type -6 333 8 5 1820 1422 210 23 80 chr1 161931320 161931708 -35263724 + ORR1D1 LTR MaLR 7 372 -2 5 1820 203 240 0 0 chr1 161931771 161931821 -35263611 + (CACCC)n Simple_repeat Simple_repeat 5 54 0 5 1820 262 315 165 29 chr1 161932828 161933034 -35262398 - LTR88b LTR Gypsy? -575 262 29 5 1820 333 0 0 0 chr1 161933358 161933395 -35262037 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1820 294 98 0 0 chr1 161933397 161933448 -35261984 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 5 1820 342 0 0 0 chr1 161933475 161933513 -35261919 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1820 263 191 15 0 chr1 161934626 161934694 -35260738 + (TTG)n Simple_repeat Simple_repeat 1 69 0 5 1820 795 221 0 20 chr1 161934694 161934846 -35260586 - B1_Mur2 SINE Alu 0 149 1 5 1820 291 296 55 30 chr1 161936187 161936335 -35259097 - L2b LINE L2 -374 3045 2891 5 1820 223 342 13 0 chr1 161936388 161936467 -35258965 + L2c LINE L2 3304 3383 -4 5 1820 266 261 29 14 chr1 161937134 161937204 -35258228 - PB1D7 SINE Alu -8 112 42 5 1820 249 245 50 56 chr1 161937350 161937510 -35257922 - L1MA6 LINE L1 -158 6142 5984 5 1820 588 316 132 55 chr1 161937882 161938374 -35257058 - LTR85b LTR Gypsy? -5 779 250 5 1820 1055 311 202 8 chr1 161939818 161940433 -35254999 + Zaphod DNA Tip100 18 751 -3280 5 1820 262 264 126 9 chr1 161940526 161940637 -35254795 + L1MDa LINE L1 20 143 -6490 5 1820 560 152 0 82 chr1 161940637 161940759 -35254673 + URR1B DNA MER1_type 114 225 0 5 1820 1372 313 67 27 chr1 161940759 161941748 -35253684 + L1MDa LINE L1 195 1328 -5212 5 1820 271 320 0 51 chr1 161941773 161941852 -35253580 + RSINE1 SINE B4 40 114 -51 5 1820 504 288 35 104 chr1 161941948 161942065 -35253367 + L1MDa LINE L1 1418 1522 -5111 5 1820 649 192 138 0 chr1 161942065 161942195 -35253237 - B1_Mur1 SINE Alu -1 148 1 5 1820 504 288 35 104 chr1 161942195 161942364 -35253068 + L1MDa LINE L1 1523 1684 -4949 5 1820 387 302 92 14 chr1 161942456 161942674 -35252758 + L1MDa LINE L1 2084 2318 -4315 5 1820 2646 239 130 41 chr1 161942688 161943590 -35251842 - Tigger7 DNA MER2_type -12 2479 1498 5 1820 2854 110 20 47 chr1 161943602 161944090 -35251342 - MT2C_Mm LTR ERVL 0 475 1 5 1820 3600 277 118 10 chr1 161944090 161945401 -35250031 - Tigger7 DNA MER2_type -1008 1483 31 5 1820 2923 285 87 26 chr1 161945433 161947232 -35248200 + L1MDa LINE L1 2324 4239 -2298 5 1820 2289 245 29 26 chr1 161947231 161947810 -35247622 + Lx9 LINE L1 6890 7470 -174 5 1820 470 143 11 0 chr1 161947838 161947929 -35247503 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1820 1381 290 104 58 chr1 161947993 161948882 -35246550 + L1MDa LINE L1 4337 5263 -1274 5 1820 1424 90 99 0 chr1 161948882 161949104 -35246328 + Lx2 LINE L1 6753 6996 -1 5 1820 1381 290 104 58 chr1 161949104 161949305 -35246127 + L1MDa LINE L1 5264 5478 -1059 5 1820 258 289 93 60 chr1 161949523 161949674 -35245758 + L1MD2 LINE L1 6198 6353 -6 5 1820 1203 48 0 7 chr1 161950996 161951144 -35244288 + B1_Mus1 SINE Alu 2 148 0 5 1820 633 296 34 6 chr1 161951269 161951446 -35243986 + B3A SINE B2 1 182 -16 5 1820 225 0 0 0 chr1 161952081 161952106 -35243326 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1820 793 290 50 4 chr1 161953277 161953516 -35241916 + L1MA4 LINE L1 5677 5926 -374 5 1820 1662 192 61 23 chr1 161953637 161954032 -35241400 - MTD LTR MaLR -9 410 1 5 1820 269 355 21 14 chr1 161954181 161954321 -35241111 + MIR3 SINE MIR 59 199 -9 5 1820 327 68 0 0 chr1 161954693 161954737 -35240695 - HAL1-3A_ME LINE L1 -839 2019 1976 5 1820 182 331 48 40 chr1 161955124 161955250 -35240182 + MIRb SINE MIR 109 235 -33 5 1820 319 294 0 16 chr1 161955255 161955376 -35240056 - MER96B DNA hAT -189 228 110 5 1820 572 242 104 36 chr1 161955387 161955580 -35239852 - B3 SINE B2 -10 206 1 5 1820 272 48 24 0 chr1 161955715 161955757 -35239675 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1820 259 308 28 18 chr1 161955761 161955870 -35239562 - PB1D10 SINE Alu -5 112 3 5 1820 238 333 0 0 chr1 161956245 161956323 -35239109 - MIR3 SINE MIR -23 185 108 5 1820 242 370 0 36 chr1 161956583 161956667 -35238765 + MIRc SINE MIR 22 102 -166 5 1820 225 234 31 15 chr1 161956778 161956843 -35238589 + L1MC4 LINE L1 7970 8035 -7 5 1820 28 0 0 0 chr1 161956844 161956872 -35238560 + AT_rich Low_complexity Low_complexity 1 28 0 5 1820 407 370 71 60 chr1 161958129 161958482 -35236950 + MLT1N2 LTR MaLR 114 470 -92 5 1820 418 308 106 12 chr1 161958484 161958645 -35236787 + MER45A DNA Tip100 1 176 -2 5 1820 332 271 150 19 chr1 161958734 161958941 -35236491 - Charlie4a DNA MER1_type -79 429 196 5 1820 3005 88 2 10 chr1 161960346 161960749 -35234683 + MTB LTR MaLR 1 400 0 5 1820 264 257 0 79 chr1 161961232 161961308 -35234124 - MER52-int LTR ERV1 -936 6155 6086 5 1820 316 310 85 65 chr1 161963240 161963488 -35231944 - MER66-int LTR ERV1 -5048 1628 1376 5 1820 1047 233 5 0 chr1 161964169 161964384 -35231048 + B3 SINE B2 1 216 0 5 1820 924 9 0 0 chr1 161965277 161965382 -35230050 + (CTTTG)n Simple_repeat Simple_repeat 5 109 0 5 1820 754 192 0 0 chr1 161965383 161965513 -35229919 - B1_Mur3 SINE Alu -17 132 3 5 1820 315 152 0 0 chr1 161965670 161965749 -35229683 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1820 2022 188 39 22 chr1 161966097 161966470 -35228962 + MTC LTR MaLR 1 381 -40 5 1820 372 97 0 0 chr1 161966470 161966532 -35228900 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 5 1820 2022 188 39 22 chr1 161966532 161966567 -35228865 + MTC LTR MaLR 382 416 -5 5 1820 555 16 0 0 chr1 161967393 161967457 -35227975 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1820 241 310 91 35 chr1 161968359 161968599 -35226833 - L2c LINE L2 -1 3374 3107 5 1820 488 254 16 25 chr1 161968693 161968814 -35226618 + PB1D7 SINE Alu 1 120 0 5 1820 360 197 40 0 chr1 161969275 161969351 -35226081 + RSINE1 SINE B4 68 146 -19 5 1820 312 27 0 0 chr1 161969356 161969393 -35226039 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1820 587 182 8 0 chr1 161970018 161970139 -35225293 + CT-rich Low_complexity Low_complexity 1 122 0 5 1820 368 307 122 22 chr1 161971738 161971918 -35223514 - RMER30 DNA MER1_type 0 202 5 5 1820 180 77 0 0 chr1 161973455 161973481 -35221951 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 5 1820 483 190 231 8 chr1 161973534 161973651 -35221781 + B1_Mur1 SINE Alu 5 147 -2 5 1820 22 0 0 0 chr1 161975967 161975989 -35219443 + AT_rich Low_complexity Low_complexity 1 22 0 5 1820 308 278 107 48 chr1 161977172 161977392 -35218040 + MIRc SINE MIR 37 268 0 5 1820 356 297 56 28 chr1 161977975 161978117 -35217315 - MIR3 SINE MIR -31 177 32 5 1820 864 341 109 15 chr1 161980746 161981270 -35214162 - L1MB7 LINE L1 -42 6142 5570 5 1820 567 226 7 57 chr1 161981539 161981680 -35213752 + B1_Mur1 SINE Alu 3 136 -13 5 1820 503 222 0 0 chr1 161981717 161981816 -35213616 - B1_Mur4 SINE Alu -9 141 43 5 1820 231 163 0 155 chr1 161981764 161981822 -35213610 - 4.5SRNA scRNA scRNA -6 88 40 5 1820 507 157 0 0 chr1 161981903 161981992 -35213440 + (TCTCTG)n Simple_repeat Simple_repeat 1 89 0 5 1820 590 60 12 0 chr1 161982037 161982120 -35213312 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 5 1820 588 156 14 22 chr1 161983401 161983539 -35211893 + CT-rich Low_complexity Low_complexity 1 137 0 6 1820 508 164 15 0 chr1 161983547 161983681 -35211751 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1820 215 279 10 31 chr1 161983688 161983784 -35211648 + G-rich Low_complexity Low_complexity 4 97 0 6 1820 183 232 0 0 chr1 161984905 161984961 -35210471 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1820 222 271 46 35 chr1 161985323 161985453 -35209979 + MIRc SINE MIR 5 144 -124 6 1820 340 258 65 0 chr1 161986057 161986150 -35209282 + B1F SINE Alu 3 101 -48 6 1820 419 313 4 67 chr1 161986941 161987094 -35208338 + ID_B1 SINE B4 1 148 -144 6 1820 403 209 0 11 chr1 161987326 161987418 -35208014 + ID_B1 SINE B4 126 216 -8 6 1820 315 222 0 0 chr1 161988261 161988342 -35207090 + (TTG)n Simple_repeat Simple_repeat 3 83 0 6 1820 399 237 14 38 chr1 161988357 161988519 -35206913 - HAL1-2a_MD LINE L1 -517 2507 2365 6 1820 226 314 23 0 chr1 161988788 161988874 -35206558 - MIRc SINE MIR -114 154 67 6 1820 677 327 102 68 chr1 161989436 161989876 -35205556 - MER44B DNA MER2_type -95 455 1 6 1820 208 288 75 0 chr1 161991289 161991369 -35204063 - MIRc SINE MIR -63 205 120 6 1820 186 353 50 41 chr1 161991400 161991521 -35203911 - MIRc SINE MIR -143 125 4 6 1820 240 267 13 39 chr1 161991764 161991842 -35203590 - MER102a DNA MER1_type -4 326 251 6 1820 699 243 52 43 chr1 161992186 161992397 -35203035 + B3A SINE B2 2 214 -2 6 1820 1194 54 0 0 chr1 161993012 161993160 -35202272 + B1_Mus1 SINE Alu 1 148 0 6 1820 25 0 0 0 chr1 161993162 161993187 -35202245 + AT_rich Low_complexity Low_complexity 1 25 0 6 1820 208 310 68 89 chr1 161993395 161993586 -35201846 + MIRb SINE MIR 73 259 -9 6 1820 444 186 17 8 chr1 161995345 161995464 -35199968 + GA-rich Low_complexity Low_complexity 1 120 0 6 1820 1998 129 51 3 chr1 161997259 161997570 -35197862 - ORR1A3 LTR MaLR 0 326 1 6 1820 378 0 0 0 chr1 161998217 161998259 -35197173 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1820 3167 179 38 27 chr1 161998941 161999578 -35195854 - Lx9 LINE L1 -77 7567 6924 6 1820 766 133 0 162 chr1 162000005 162000184 -35195248 - Lx9 LINE L1 -846 6798 6649 1 1820 2583 195 204 25 chr1 162000197 162000932 -35194500 + Lx9 LINE L1 5751 6617 -1027 2 1820 201 178 22 0 chr1 162000933 162000978 -35194454 + (TTGG)n Simple_repeat Simple_repeat 4 49 0 3 1820 957 153 0 7 chr1 162000978 162001129 -35194303 - B1_Mur4 SINE Alu 0 150 1 4 1820 350 281 0 0 chr1 162002260 162002342 -35193090 + L2b LINE L2 3293 3374 -1 5 1820 196 347 31 31 chr1 162003437 162003565 -35191867 + MIR SINE MIR 114 241 -21 6 1821 237 108 0 0 chr1 162005482 162005519 -35189913 + (GAA)n Simple_repeat Simple_repeat 3 39 0 7 1821 252 200 36 0 chr1 162006600 162006655 -35188777 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1821 401 164 707 0 chr1 162008253 162008376 -35187056 + B3 SINE B2 1 210 -6 9 1821 243 231 100 25 chr1 162009179 162009222 -35186210 + MER3 DNA MER1_type 2 50 -159 1 1821 483 218 96 8 chr1 162009222 162009347 -35186085 - MER3 DNA MER1_type -2 207 72 1 1821 734 250 17 11 chr1 162010630 162010804 -35184628 + B3 SINE B2 37 211 -5 1 1821 291 258 0 0 chr1 162011657 162011723 -35183709 + CT-rich Low_complexity Low_complexity 1 66 0 1 1821 568 301 27 18 chr1 162012045 162012265 -35183167 + L1MA6 LINE L1 6049 6270 -30 1 1821 295 323 28 103 chr1 162012399 162012544 -35182888 + B4A SINE B4 158 291 -1 1 1821 216 365 9 9 chr1 162012708 162012813 -35182619 + MER5B DNA MER1_type 1 105 -73 1 1821 4535 128 148 5 chr1 162013032 162013870 -35181562 + RMER17B LTR ERVK 1 958 0 1 1821 405 54 0 0 chr1 162013940 162013996 -35181436 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1821 2496 117 2 60 chr1 162014668 162015069 -35180363 + ORR1C1 LTR MaLR 1 378 0 1 1821 483 330 16 22 chr1 162017762 162017945 -35177487 + MLT1A LTR MaLR 180 361 -13 2 1821 607 206 0 0 chr1 162017963 162018065 -35177367 + PB1D10 SINE Alu 1 102 -15 2 1821 457 272 0 60 chr1 162018104 162018237 -35177195 + ID_B1 SINE B4 93 217 -7 2 1821 240 170 0 0 chr1 162019431 162019484 -35175948 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1821 289 329 104 12 chr1 162019974 162020137 -35175295 + MER5A DNA MER1_type 1 178 -11 2 1821 1821 113 88 13 chr1 162020380 162020686 -35174746 + ORR1A4 LTR MaLR 1 329 0 2 1821 23 33 0 0 chr1 162021087 162021117 -35174315 + AT_rich Low_complexity Low_complexity 1 30 0 2 1821 245 228 165 0 chr1 162021273 162021352 -35174080 + B1F1 SINE Alu 3 94 -55 2 1821 2575 126 27 36 chr1 162021551 162021962 -35173470 - MTB_Mm LTR MaLR 0 407 1 2 1821 7887 55 1 2 chr1 162022284 162023246 -35172186 + L1Md_F2 LINE L1 5620 6580 -2 2 1821 318 176 0 34 chr1 162023583 162023671 -35171761 + GA-rich Low_complexity Low_complexity 4 88 0 3 1821 389 298 9 28 chr1 162024752 162024859 -35170573 + PB1D10 SINE Alu 7 111 -6 3 1821 200 100 0 24 chr1 162024970 162025011 -35170421 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1821 2523 141 38 125 chr1 162025637 162026214 -35169218 - RLTR11A2 LTR ERVK 0 527 1 3 1821 544 332 24 8 chr1 162026661 162026910 -35168522 - Tigger8 DNA MER2_type -138 528 276 3 1821 452 18 18 0 chr1 162026949 162027006 -35168426 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1821 190 280 63 51 chr1 162029008 162029087 -35166345 - L2b LINE L2 -44 3343 3236 3 1821 245 322 17 9 chr1 162029411 162029527 -35165905 - L2b LINE L2 -618 2801 2685 3 1821 406 250 0 0 chr1 162029843 162029923 -35165509 - ID4 SINE ID -2 81 2 3 1821 240 317 76 38 chr1 162030035 162030140 -35165292 + MLT1J2 LTR MaLR 3 111 -337 3 1821 746 286 28 5 chr1 162032094 162032305 -35163127 - ID_B1 SINE B4 -7 217 2 3 1821 264 244 122 0 chr1 162033198 162033280 -35162152 + L2a LINE L2 3322 3413 -13 4 1821 336 220 0 0 chr1 162033328 162033446 -35161986 + CT-rich Low_complexity Low_complexity 2 119 0 4 1821 1032 111 0 0 chr1 162033450 162033630 -35161802 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1821 191 259 56 0 chr1 162034590 162034644 -35160788 + MIRc SINE MIR 113 172 -96 4 1821 292 219 5 48 chr1 162036633 162036820 -35158612 + GA-rich Low_complexity Low_complexity 2 180 0 4 1821 247 277 0 15 chr1 162036834 162036900 -35158532 + ID4 SINE ID 2 66 -17 4 1821 313 292 28 0 chr1 162037892 162037998 -35157434 + PB1D9 SINE Alu 5 113 -7 4 1821 610 244 49 37 chr1 162039142 162039304 -35156128 + RSINE1 SINE B4 2 165 0 4 1821 248 306 30 42 chr1 162039304 162039471 -35155961 + GA-rich Low_complexity Low_complexity 3 167 0 4 1821 889 278 65 25 chr1 162039939 162040216 -35155216 + B4A SINE B4 5 292 0 4 1821 255 312 83 31 chr1 162040798 162040894 -35154538 + PB1D10 SINE Alu 6 106 -11 5 1821 204 40 0 0 chr1 162040895 162040920 -35154512 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 5 1821 1040 136 6 0 chr1 162040920 162041096 -35154336 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 5 1821 870 174 12 8 chr1 162041941 162042186 -35153246 + CT-rich Low_complexity Low_complexity 1 245 0 5 1821 251 335 128 37 chr1 162042374 162042702 -35152730 + L2 LINE L2 2424 2781 -638 5 1821 244 250 70 40 chr1 162042956 162043056 -35152376 + Charlie5 DNA MER1_type 7 109 -2515 5 1821 257 0 0 29 chr1 162043074 162043108 -35152324 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 1821 227 245 90 60 chr1 162043334 162043434 -35151998 + MLT1J LTR MaLR 324 426 -86 5 1821 546 57 0 0 chr1 162044011 162044081 -35151351 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1821 396 0 0 0 chr1 162044310 162044354 -35151078 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1821 493 252 68 74 chr1 162044921 162045084 -35150348 + RSINE1 SINE B4 3 164 -1 6 1821 267 133 0 0 chr1 162045104 162045149 -35150283 + (ATG)n Simple_repeat Simple_repeat 1 45 0 6 1821 1116 181 102 5 chr1 162045809 162046014 -35149418 + URR1B DNA MER1_type 1 225 0 6 1821 292 279 73 24 chr1 162047022 162047187 -35148245 + L1MB5 LINE L1 5733 5905 -269 6 1821 884 245 285 4 chr1 162047212 162047708 -35147724 + Lx8 LINE L1 6839 7473 0 6 1821 259 307 79 69 chr1 162047737 162047926 -35147506 + L1MB5 LINE L1 5948 6138 -40 6 1821 281 257 0 27 chr1 162049333 162049445 -35145987 + L1M3 LINE L1 5587 5695 -749 6 1821 342 278 176 47 chr1 162049558 162049572 -35145860 + L1MB7 LINE L1 5674 5691 -493 6 1821 186 43 0 0 chr1 162049572 162049595 -35145837 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1821 342 278 176 47 chr1 162049595 162050006 -35145426 + L1MB7 LINE L1 5692 6154 -30 6 1821 317 213 16 0 chr1 162050344 162050405 -35145027 - ID4 SINE ID -18 65 4 6 1821 387 267 52 0 chr1 162050925 162051041 -35144391 + PB1 SINE Alu 1 122 -5 6 1821 1331 126 32 9 chr1 162051044 162051260 -35144172 + URR1B DNA MER1_type 5 225 0 7 1821 194 152 20 61 chr1 162051466 162051515 -35143917 + MIRm SINE MIR 109 155 -121 7 1821 541 275 186 11 chr1 162051698 162052266 -35143166 + L1MB7 LINE L1 5511 6178 -6 7 1821 257 309 17 43 chr1 162053344 162053459 -35141973 + MIR SINE MIR 38 149 -59 7 1821 510 17 0 0 chr1 162053590 162053649 -35141783 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1821 386 252 159 0 chr1 162054378 162054529 -35140903 + MER20 DNA MER1_type 44 218 -1 7 1821 605 249 117 11 chr1 162056178 162056357 -35139075 - B4A SINE B4 -87 205 8 7 1821 6228 46 0 4 chr1 162057576 162058321 -35137111 + L1Md_F2 LINE L1 5826 6567 -15 7 1821 285 29 0 0 chr1 162058333 162058367 -35137065 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 1821 279 122 41 0 chr1 162058686 162058735 -35136697 + MTD LTR MaLR 354 404 -15 7 1821 2557 142 5 12 chr1 162058776 162059196 -35136236 + MTC LTR MaLR 5 421 0 8 1821 188 427 0 0 chr1 162059255 162059351 -35136081 - MIR SINE MIR -158 104 9 8 1821 180 167 0 0 chr1 162059881 162059902 -35135530 + A-rich Low_complexity Low_complexity 1 21 0 8 1821 997 129 0 22 chr1 162059902 162060084 -35135348 + GA-rich Low_complexity Low_complexity 3 180 0 8 1821 180 167 0 0 chr1 162060084 162060098 -35135334 + A-rich Low_complexity Low_complexity 22 35 0 8 1821 392 305 28 22 chr1 162060139 162060320 -35135112 + Lx7 LINE L1 7127 7308 -388 8 1821 348 43 0 0 chr1 162060320 162060366 -35135066 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1821 732 80 0 0 chr1 162060366 162060478 -35134954 + (GA)n Simple_repeat Simple_repeat 1 113 0 8 1821 209 186 0 0 chr1 162060492 162060535 -35134897 + T-rich Low_complexity Low_complexity 3 45 0 8 1821 29 47 0 0 chr1 162060630 162060673 -35134759 + AT_rich Low_complexity Low_complexity 1 43 0 8 1821 311 42 42 0 chr1 162061897 162061945 -35133487 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 9 1821 441 279 10 0 chr1 162061972 162062076 -35133356 - PB1D10 SINE Alu -4 113 9 9 1821 343 351 22 0 chr1 162062093 162062227 -35133205 + B1F1 SINE Alu 5 141 -8 9 1821 230 373 14 21 chr1 162062392 162062537 -35132895 - L3 LINE CR1 -821 3668 3525 9 1821 204 158 0 0 chr1 162062620 162062658 -35132774 + C-rich Low_complexity Low_complexity 1 38 0 9 1821 322 235 25 0 chr1 162063072 162063153 -35132279 + MLT1B LTR MaLR 76 158 -232 9 1821 1203 47 14 0 chr1 162064548 162064696 -35130736 + B1_Mur4 SINE Alu 1 150 0 9 1821 871 9 19 0 chr1 162064790 162064898 -35130534 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 9 1821 22 94 0 0 chr1 162066173 162066237 -35129195 + AT_rich Low_complexity Low_complexity 1 64 0 9 1821 186 43 0 0 chr1 162066693 162066716 -35128716 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 1821 308 151 19 0 chr1 162068092 162068145 -35127287 + HAL1-3A_ME LINE L1 1958 2011 -847 1 1821 418 320 43 35 chr1 162068271 162068493 -35126939 + MIR SINE MIR 29 249 -19 1 1821 298 316 114 38 chr1 162069989 162070147 -35125285 + Arthur1A DNA Tip100 8 177 0 1 1821 234 62 0 0 chr1 162070269 162070301 -35125131 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1821 438 186 0 0 chr1 162070300 162070386 -35125046 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1821 183 156 0 0 chr1 162071779 162071811 -35123621 + A-rich Low_complexity Low_complexity 4 35 0 1 1821 180 342 38 12 chr1 162071883 162071963 -35123469 + L3 LINE CR1 4380 4461 -28 1 1821 1467 270 56 39 chr1 162072430 162072966 -35122466 + MER90 LTR ERV1 7 551 -24 1 1821 4740 102 50 12 chr1 162073235 162073956 -35121476 + Lx3B LINE L1 6225 6972 -1 1 1821 198 143 0 0 chr1 162073956 162073991 -35121441 + (TAA)n Simple_repeat Simple_repeat 1 35 0 1 1821 227 278 0 0 chr1 162074140 162074194 -35121238 - B1F2 SINE Alu -92 57 4 1 1821 513 0 0 0 chr1 162074363 162074420 -35121012 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1821 401 225 0 0 chr1 162074449 162074529 -35120903 - B4 SINE B4 -49 243 164 1 1821 192 306 36 36 chr1 162075593 162075705 -35119727 + MER5A DNA MER1_type 28 139 -50 1 1821 461 267 114 89 chr1 162075713 162076029 -35119403 - Lx8 LINE L1 0 7473 7150 1 1821 210 37 0 0 chr1 162076716 162076743 -35118689 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1821 1571 43 27 0 chr1 162077146 162077332 -35118100 - B2_Mm1a SINE B2 -2 191 1 1 1821 189 311 0 16 chr1 162081881 162081943 -35113489 - MIRb SINE MIR -1 267 207 1 1821 1089 233 115 12 chr1 162084637 162084958 -35110474 + MTEa LTR MaLR 26 379 0 1 1821 359 329 114 37 chr1 162084970 162085295 -35110137 - LTR31 LTR ERV1 -107 512 163 1 1821 266 239 15 0 chr1 162086259 162086326 -35109106 - L1MC4 LINE L1 -2 8040 7973 1 1821 267 136 0 0 chr1 162086599 162086658 -35108774 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1821 1089 74 0 0 chr1 162086942 162087077 -35108355 + B1_Mus1 SINE Alu 2 136 -12 1 1821 366 23 0 0 chr1 162087078 162087121 -35108311 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1821 786 154 7 40 chr1 162087249 162087398 -35108034 + B1_Mur3 SINE Alu 4 147 -2 1 1821 297 315 105 45 chr1 162087410 162087624 -35107808 + LTR85b LTR Gypsy? 276 552 -232 1 1821 2468 269 30 25 chr1 162088086 162088810 -35106622 - MTEb-int LTR MaLR -852 728 1 1 1821 323 260 20 10 chr1 162088824 162088925 -35106507 - MTEb LTR MaLR -14 365 264 1 1821 22 0 0 0 chr1 162089005 162089027 -35106405 + AT_rich Low_complexity Low_complexity 1 22 0 1 1821 226 156 22 22 chr1 162089348 162089394 -35106038 + GA-rich Low_complexity Low_complexity 3 48 0 1 1821 332 264 70 35 chr1 162090130 162090244 -35105188 + PB1D7 SINE Alu 1 118 -2 1 1821 298 304 43 9 chr1 162091494 162091610 -35103822 + L1ME1 LINE L1 6006 6125 -54 1 1821 647 211 81 40 chr1 162091610 162091783 -35103649 + B3A SINE B2 3 182 -16 1 1821 486 0 0 0 chr1 162092012 162092066 -35103366 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1821 693 251 328 5 chr1 162092069 162092284 -35103148 - B4A SINE B4 -6 286 2 1 1821 260 333 20 20 chr1 162092331 162092432 -35103000 - MER5B DNA MER1_type -76 102 2 1 1821 1896 276 68 57 chr1 162092599 162093505 -35101927 - L1MB7 LINE L1 -16 6168 5260 1 1821 359 194 194 0 chr1 162093505 162093603 -35101829 - PB1D10 SINE Alu 0 117 1 1 1821 546 262 37 69 chr1 162093603 162093696 -35101736 - L1MB7 LINE L1 -887 5259 5166 1 1821 207 0 0 0 chr1 162093699 162093722 -35101710 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1821 4336 75 20 0 chr1 162093865 162094425 -35101007 - L1_Mus1 LINE L1 -229 6338 5768 1 1821 1871 56 43 31 chr1 162094427 162094684 -35100748 + L1_Mus1 LINE L1 6307 6566 -1 1 1821 456 289 7 0 chr1 162094725 162094883 -35100549 - L1MA4 LINE L1 -369 5931 5784 1 1821 1008 0 0 0 chr1 162094956 162095068 -35100364 + (GAA)n Simple_repeat Simple_repeat 2 113 0 1 1821 180 0 0 0 chr1 162095093 162095113 -35100319 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1821 1014 99 33 0 chr1 162095114 162095266 -35100166 - B2_Mm2 SINE B2 -37 158 2 1 1821 371 186 35 11 chr1 162096768 162096855 -35098577 + B4A SINE B4 124 212 -80 1 1821 716 183 15 15 chr1 162097039 162097172 -35098260 - B1F SINE Alu -16 133 1 1 1821 589 287 41 24 chr1 162097429 162097722 -35097710 - L1M5 LINE L1 -922 5224 4927 1 1821 823 280 65 28 chr1 162098039 162098329 -35097103 + MLT1B LTR MaLR 22 322 -68 1 1821 966 242 40 0 chr1 162099116 162099314 -35096118 + B3 SINE B2 4 209 -7 1 1821 225 360 40 0 chr1 162099830 162099930 -35095502 - LTR33B LTR ERVL -129 374 271 1 1821 238 235 14 56 chr1 162099958 162100030 -35095402 - LTR33B LTR ERVL -304 199 131 1 1821 3359 125 58 16 chr1 162100199 162100482 -35094950 + Lx LINE L1 6060 6338 -316 1 1821 432 0 0 0 chr1 162100482 162100530 -35094902 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1821 3359 125 58 16 chr1 162100530 162100817 -35094615 + Lx LINE L1 6339 6653 -1 1 1821 342 0 0 0 chr1 162100969 162101007 -35094425 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 1821 478 294 81 22 chr1 162101301 162101524 -35093908 - Lx9 LINE L1 -174 7470 7235 1 1821 1133 75 7 0 chr1 162101535 162101682 -35093750 - B1_Mus1 SINE Alu 0 148 1 1 1821 814 267 9 32 chr1 162101682 162101899 -35093533 - Lx9 LINE L1 -383 7261 7050 1 1821 2114 266 31 49 chr1 162101888 162101948 -35093484 + Lx9 LINE L1 6420 6478 -1166 1 1821 387 0 0 0 chr1 162101948 162101991 -35093441 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1821 2114 266 31 49 chr1 162101991 162102010 -35093422 + Lx9 LINE L1 6479 6485 -1159 1 1821 189 0 0 0 chr1 162102010 162102031 -35093401 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1821 2114 266 31 49 chr1 162102031 162102586 -35092846 + Lx9 LINE L1 6486 7043 -601 1 1821 180 0 0 0 chr1 162102747 162102767 -35092665 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1821 22 70 0 0 chr1 162102772 162102815 -35092617 + AT_rich Low_complexity Low_complexity 1 43 0 1 1821 23 0 0 0 chr1 162103101 162103124 -35092308 + AT_rich Low_complexity Low_complexity 1 23 0 1 1821 498 146 0 0 chr1 162103365 162103475 -35091957 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 1821 264 30 0 0 chr1 162103477 162103510 -35091922 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1821 3655 104 133 21 chr1 162103512 162104120 -35091312 + Lx4A LINE L1 6145 6820 -238 1 1821 1056 212 19 9 chr1 162104761 162104975 -35090457 + B3 SINE B2 1 216 0 1 1821 587 304 84 31 chr1 162106399 162106562 -35088870 + B4 SINE B4 3 175 -117 1 1821 210 91 0 0 chr1 162106562 162106595 -35088837 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 1 1821 587 304 84 31 chr1 162106595 162106692 -35088740 + B4 SINE B4 176 276 -16 1 1821 510 91 0 0 chr1 162106698 162106775 -35088657 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1821 201 226 0 11 chr1 162107737 162107794 -35087638 + MIR SINE MIR 114 175 -93 1 1821 877 180 157 15 chr1 162109930 162110127 -35085305 + URR1B DNA MER1_type 1 225 0 1 1821 183 42 0 0 chr1 162110719 162110743 -35084689 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1821 393 295 153 46 chr1 162111055 162111428 -35084004 + MLT1C LTR MaLR 52 464 -3 1 1821 450 0 0 0 chr1 162111856 162111906 -35083526 + (ATATG)n Simple_repeat Simple_repeat 2 51 0 1 1821 792 134 0 0 chr1 162111906 162112040 -35083392 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 1 1821 575 266 28 28 chr1 162113018 162113161 -35082271 + B1F2 SINE Alu 7 149 0 1 1821 426 340 101 39 chr1 162113555 162113812 -35081620 - LTR16E2 LTR ERVL -275 293 21 1 1821 339 319 124 16 chr1 162114032 162114226 -35081206 + L2a LINE L2 3042 3256 -170 1 1821 1293 239 44 27 chr1 162114284 162114650 -35080782 + MER45B DNA Tip100 625 996 -44 1 1821 323 167 15 0 chr1 162115050 162115116 -35080316 + GA-rich Low_complexity Low_complexity 1 67 0 1 1821 804 153 244 34 chr1 162115763 162115939 -35079493 + B3 SINE B2 4 216 0 1 1821 459 0 0 0 chr1 162116095 162116146 -35079286 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1821 716 156 77 15 chr1 162116182 162116312 -35079120 - B1_Mm SINE Alu -8 139 2 1 1821 4135 145 36 14 chr1 162116346 162117012 -35078420 - Lx4A LINE L1 0 7058 6378 1 1821 229 69 0 0 chr1 162117019 162117048 -35078384 - L1_Mur1 LINE L1 -423 5463 5435 1 1821 538 261 17 9 chr1 162117052 162117168 -35078264 - PB1D7 SINE Alu -2 118 2 1 1821 593 267 34 7 chr1 162117227 162117374 -35078058 - RSINE1 SINE B4 -13 152 2 1 1821 450 233 22 0 chr1 162117396 162117486 -35077946 - B3 SINE B2 0 216 125 1 1821 463 251 148 44 chr1 162118072 162118255 -35077177 - B3A SINE B2 -12 204 3 1 1821 252 0 0 0 chr1 162118579 162118607 -35076825 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1821 432 0 0 0 chr1 162118607 162118654 -35076778 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1821 1849 171 334 11 chr1 162118683 162119204 -35076228 + RMER6C LTR ERVK 1 689 -1 1 1821 192 254 18 0 chr1 162119378 162119433 -35075999 + MIR SINE MIR 79 134 -128 1 1821 531 225 264 0 chr1 162119437 162119615 -35075817 - URR1B DNA MER1_type 0 225 1 1 1821 1275 42 0 0 chr1 162120110 162120254 -35075178 + B1_Mm SINE Alu 2 145 -2 1 1821 3420 34 0 0 chr1 162120260 162120642 -35074790 + L1Md_T LINE L1 6201 6582 0 1 1821 189 107 0 0 chr1 162120646 162120674 -35074758 + (GGAAA)n Simple_repeat Simple_repeat 2 29 0 1 1821 381 93 0 0 chr1 162120668 162120722 -35074710 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1 1821 340 323 98 10 chr1 162120812 162121006 -35074426 + L1MB4 LINE L1 5679 5889 -282 1 1821 624 206 125 0 chr1 162121088 162121248 -35074184 + L1MB4 LINE L1 5882 6061 -119 1 1821 249 231 39 0 chr1 162121257 162121309 -35074123 + ID_B1 SINE B4 171 224 0 1 1821 437 211 0 22 chr1 162121403 162121495 -35073937 - B3 SINE B2 -4 212 123 1 1821 289 296 52 108 chr1 162121558 162121755 -35073677 + MLT1A1 LTR MaLR 36 220 -188 1 1821 652 253 0 7 chr1 162121755 162121790 -35073642 + B3 SINE B2 2 36 -180 2 1821 5230 43 2 2 chr1 162121790 162122377 -35073055 - LTRIS_Mus LTR ERV1 0 587 1 2 1821 652 253 0 7 chr1 162122377 162122488 -35072944 + B3 SINE B2 37 147 -69 2 1821 859 198 124 5 chr1 162122505 162122698 -35072734 - ID_B1 SINE B4 -7 217 2 2 1821 314 197 15 0 chr1 162122700 162122766 -35072666 + MLT1A1 LTR MaLR 342 408 0 1 1821 288 263 56 75 chr1 162122835 162122942 -35072490 + MER21B LTR ERV1 363 467 -396 2 1821 528 231 107 8 chr1 162123069 162123191 -35072241 - ID_B1 SINE B4 0 224 91 2 1821 1372 113 0 5 chr1 162123869 162124056 -35071376 - B2_Mm2 SINE B2 -8 187 2 2 1821 1279 49 0 0 chr1 162124086 162124230 -35071202 - B1_Mm SINE Alu -2 145 2 2 1821 366 189 231 15 chr1 162124343 162124477 -35070955 - Lx7 LINE L1 0 7696 7534 2 1821 282 57 37 19 chr1 162124919 162124973 -35070459 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 2 1821 295 267 113 38 chr1 162126160 162126412 -35069020 - Charlie5 DNA MER1_type 0 2624 2354 2 1821 244 330 11 22 chr1 162126445 162126535 -35068897 - Charlie5 DNA MER1_type -2530 94 6 2 1821 303 329 70 14 chr1 162126553 162126695 -35068737 - L2 LINE L2 -1813 1606 1457 2 1821 224 299 48 83 chr1 162126708 162126792 -35068640 + RSINE1 SINE B4 85 165 0 2 1821 497 242 70 45 chr1 162126835 162126991 -35068441 + RSINE1 SINE B4 6 165 0 2 1821 257 90 3 0 chr1 162127523 162127562 -35067870 - L1MB1 LINE L1 -303 5988 5949 2 1821 225 31 62 0 chr1 162127723 162127755 -35067677 + B1_Mm SINE Alu 99 132 -15 2 1821 247 316 110 52 chr1 162128684 162128772 -35066660 + L1ME3A LINE L1 5657 5744 -429 2 1821 804 190 414 4 chr1 162128772 162129052 -35066380 - RMER10B LTR ERVL 0 398 4 2 1821 247 316 110 52 chr1 162129052 162129407 -35066025 + L1ME3A LINE L1 5745 6126 -47 2 1821 447 250 116 8 chr1 162130217 162130338 -35065094 - B3 SINE B2 -3 213 80 2 1821 289 169 75 38 chr1 162130790 162130870 -35064562 - L1MC5 LINE L1 -1230 6731 6649 2 1821 390 269 96 17 chr1 162130871 162131038 -35064394 - B3A SINE B2 -3 213 36 2 1821 564 257 55 27 chr1 162131144 162131331 -35064101 + B3A SINE B2 1 193 0 2 1821 1600 48 0 5 chr1 162131365 162131553 -35063879 + B2_Mm1a SINE B2 1 187 -6 2 1821 1237 55 0 14 chr1 162131560 162131708 -35063724 + B1_Mus1 SINE Alu 1 146 -2 2 1821 486 244 93 25 chr1 162134848 162134966 -35060466 + B1_Mur2 SINE Alu 2 127 -22 2 1821 856 274 33 9 chr1 162135391 162135601 -35059831 + ID_B1 SINE B4 4 218 -6 2 1821 1091 208 46 39 chr1 162135650 162135910 -35059522 + MTD LTR MaLR 1 262 -157 2 1821 308 303 162 18 chr1 162135951 162136062 -35059370 - MER58B DNA MER1_type -3 338 212 2 1822 769 200 186 16 chr1 162136415 162136608 -35058824 - URR1A DNA MER1_type 0 226 1 2 1822 638 205 122 35 chr1 162136940 162137112 -35058320 + B3 SINE B2 30 216 0 2 1822 835 171 234 0 chr1 162137182 162137357 -35058075 + B3 SINE B2 1 216 0 2 1822 322 185 206 0 chr1 162137644 162137736 -35057696 - PB1D7 SINE Alu -8 112 2 2 1822 466 239 116 27 chr1 162137814 162137926 -35057506 + ID_B1 SINE B4 91 212 -12 2 1822 489 239 85 0 chr1 162139135 162139265 -35056167 + RSINE1 SINE B4 3 143 -22 2 1822 540 303 76 3 chr1 162139517 162139685 -35055747 + B3A SINE B2 1 178 -38 2 1822 1264 198 196 104 chr1 162139835 162140432 -35055000 + Lx9 LINE L1 6993 7644 0 2 1822 22 0 0 0 chr1 162140432 162140454 -35054978 + AT_rich Low_complexity Low_complexity 1 22 0 2 1822 22 0 0 0 chr1 162140752 162140774 -35054658 + AT_rich Low_complexity Low_complexity 1 22 0 2 1822 275 244 161 11 chr1 162141138 162141225 -35054207 + PB1D9 SINE Alu 2 101 -19 2 1822 313 271 75 65 chr1 162141264 162141465 -35053967 + L1MB7 LINE L1 5347 5549 -634 2 1822 231 230 0 63 chr1 162141562 162141641 -35053791 + L1MB7 LINE L1 5763 5836 -338 2 1822 245 295 0 0 chr1 162141698 162141759 -35053673 + L1MB7 LINE L1 6028 6088 -96 2 1822 239 240 39 39 chr1 162142268 162142346 -35053086 + ID4 SINE ID 3 80 -3 2 1822 29 0 0 0 chr1 162144161 162144190 -35051242 + AT_rich Low_complexity Low_complexity 1 29 0 2 1822 2190 134 148 34 chr1 162144282 162144668 -35050764 - RLTR23 LTR ERV1 0 430 1 2 1822 698 179 154 11 chr1 162144726 162144901 -35050531 - RLTR28 LTR ERVL -3 521 322 2 1822 1534 149 96 3 chr1 162145070 162145373 -35050059 - RLTR28 LTR ERVL -193 331 1 2 1822 518 194 101 34 chr1 162145624 162145773 -35049659 - RLTR14 LTR ERV1 0 382 224 2 1822 250 368 93 40 chr1 162146233 162146533 -35048899 + L2 LINE L2 2529 2844 -575 2 1822 771 142 69 23 chr1 162146690 162146820 -35048612 + B1_Mus2 SINE Alu 1 136 -11 2 1822 809 140 119 5 chr1 162147289 162147482 -35047950 + RLTR20A2 LTR ERVK 1 287 -281 2 1822 590 178 9 95 chr1 162147464 162147634 -35047798 + RLTR20A2 LTR ERVK 387 556 -22 2 1822 330 276 118 39 chr1 162147909 162147982 -35047450 + PB1D7 SINE Alu 6 90 -30 2 1822 1904 148 141 6 chr1 162147982 162148315 -35047117 - ORR1C1 LTR MaLR 0 378 1 2 1822 330 276 118 39 chr1 162148315 162148343 -35047089 + PB1D7 SINE Alu 91 115 -5 2 1822 1364 66 10 85 chr1 162148900 162149099 -35046333 + B2_Mm1t SINE B2 1 184 -9 2 1822 634 252 0 43 chr1 162150994 162151135 -35044297 - B1F1 SINE Alu -5 144 10 2 1822 420 215 161 0 chr1 162151890 162151983 -35043449 + PB1D10 SINE Alu 9 116 -1 2 1822 454 274 0 19 chr1 162155330 162155434 -35039998 - PB1D9 SINE Alu -5 115 14 2 1822 2306 252 72 77 chr1 162155451 162155920 -35039512 + RCHARR1 DNA MER1_type 3 486 -488 2 1822 981 178 135 0 chr1 162155920 162156105 -35039327 + B3 SINE B2 1 210 -6 2 1822 2306 252 72 77 chr1 162156105 162156543 -35038889 + RCHARR1 DNA MER1_type 487 905 -69 2 1822 1354 170 14 0 chr1 162157056 162157274 -35038158 + URR1B DNA MER1_type 2 222 -3 2 1822 2948 99 93 42 chr1 162157705 162158157 -35037275 + MT2C_Mm LTR ERVL 1 475 0 2 1822 465 289 113 43 chr1 162158703 162158896 -35036536 + MLT1J LTR MaLR 1 181 -331 2 1822 389 361 68 32 chr1 162159341 162159593 -35035839 + MIR SINE MIR 2 262 0 2 1822 23 0 0 0 chr1 162159644 162159667 -35035765 + AT_rich Low_complexity Low_complexity 1 23 0 2 1822 821 182 214 17 chr1 162159667 162159840 -35035592 - B3 SINE B2 -9 207 1 2 1822 25 51 0 0 chr1 162159957 162159996 -35035436 + AT_rich Low_complexity Low_complexity 1 39 0 2 1822 225 0 0 0 chr1 162160488 162160513 -35034919 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1822 1235 82 0 0 chr1 162160520 162160667 -35034765 - B1_Mus1 SINE Alu 0 148 2 2 1822 353 148 0 0 chr1 162160982 162161036 -35034396 + B3 SINE B2 2 55 -161 2 1822 230 277 19 87 chr1 162161034 162161137 -35034295 + B2_Mm2 SINE B2 93 188 -7 2 1822 647 183 19 56 chr1 162161389 162161551 -35033881 + Lx7 LINE L1 7392 7547 -149 2 1822 852 240 32 59 chr1 162162787 162163008 -35032424 - B3 SINE B2 0 216 2 2 1822 27 0 0 0 chr1 162163012 162163039 -35032393 + AT_rich Low_complexity Low_complexity 1 27 0 2 1822 335 239 135 18 chr1 162163067 162163178 -35032254 + B4A SINE B4 2 125 -167 2 1822 5157 56 8 5 chr1 162163217 162163832 -35031600 + L1Md_F2 LINE L1 5964 6580 -2 2 1822 3885 117 138 38 chr1 162164430 162165117 -35030315 - RMER6A LTR ERVK 0 756 1 2 1822 366 193 27 18 chr1 162165474 162165585 -35029847 + (TATG)n Simple_repeat Simple_repeat 4 115 0 2 1822 22 56 0 0 chr1 162165713 162165749 -35029683 + AT_rich Low_complexity Low_complexity 1 36 0 2 1822 1331 27 0 0 chr1 162166185 162166332 -35029100 + B1_Mus2 SINE Alu 1 147 0 2 1822 777 229 83 6 chr1 162166885 162167065 -35028367 - B3A SINE B2 -3 195 2 2 1822 989 219 22 6 chr1 162167705 162167884 -35027548 + B3A SINE B2 2 183 -15 2 1822 234 0 0 0 chr1 162168558 162168584 -35026848 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1822 1443 71 55 0 chr1 162169295 162169478 -35025954 + B2_Mm2 SINE B2 2 194 -1 2 1822 190 315 124 67 chr1 162169742 162169936 -35025496 + L2b LINE L2 3171 3375 0 2 1822 293 273 114 0 chr1 162170374 162170462 -35024970 + ID_B1 SINE B4 41 138 -86 2 1822 438 269 159 15 chr1 162170505 162170637 -35024795 + RSINE1 SINE B4 2 152 -13 2 1822 1213 49 28 0 chr1 162171333 162171476 -35023956 - B1_Mm SINE Alu 0 147 1 2 1822 673 160 48 109 chr1 162171672 162171819 -35023613 + B1_Mus1 SINE Alu 2 139 -9 2 1822 342 0 0 0 chr1 162171819 162171857 -35023575 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1822 291 54 0 0 chr1 162172933 162172970 -35022462 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1822 698 316 21 0 chr1 162173002 162173192 -35022240 - B4A SINE B4 -98 194 1 2 1822 1844 148 132 132 chr1 162173450 162173911 -35021521 - RMER6B LTR ERVK 0 461 1 2 1822 581 169 151 16 chr1 162174283 162174409 -35021023 + B1_Mus2 SINE Alu 5 147 0 2 1822 26 30 0 0 chr1 162174471 162174504 -35020928 + AT_rich Low_complexity Low_complexity 1 33 0 2 1822 336 265 0 35 chr1 162175562 162175648 -35019784 + ID4_ SINE ID 1 83 0 2 1822 657 233 100 0 chr1 162175751 162175931 -35019501 + B3A SINE B2 1 198 0 2 1822 1305 213 155 35 chr1 162176340 162176714 -35018718 - MTD LTR MaLR 0 419 1 2 1822 325 241 42 100 chr1 162176857 162176977 -35018455 - PB1D10 SINE Alu -2 115 3 2 1822 833 199 0 14 chr1 162177300 162177448 -35017984 + B1_Mur2 SINE Alu 4 149 0 2 1822 180 0 0 0 chr1 162177462 162177482 -35017950 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1822 198 118 0 0 chr1 162179319 162179353 -35016079 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1822 1113 102 0 0 chr1 162179591 162179738 -35015694 + B1_Mus1 SINE Alu 2 148 0 2 1822 690 179 0 0 chr1 162179760 162179894 -35015538 + A-rich Low_complexity Low_complexity 1 134 0 2 1822 21 0 0 0 chr1 162182664 162182685 -35012747 + AT_rich Low_complexity Low_complexity 1 21 0 2 1822 960 177 37 11 chr1 162183355 162183543 -35011889 - B2_Mm2 SINE B2 -1 194 2 3 1822 307 215 46 0 chr1 162183591 162183656 -35011776 - ID4 SINE ID -3 80 13 3 1822 1007 235 13 52 chr1 162184634 162184863 -35010569 + ID_B1 SINE B4 2 221 -3 3 1822 430 276 10 39 chr1 162184868 162184970 -35010462 + B4A SINE B4 2 101 -64 3 1822 386 306 54 9 chr1 162184992 162185104 -35010328 + B4A SINE B4 173 289 -3 3 1822 327 78 0 0 chr1 162185175 162185226 -35010206 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 1822 365 245 99 30 chr1 162185325 162185426 -35010006 - PB1D7 SINE Alu -11 109 2 3 1822 830 177 14 0 chr1 162186038 162186179 -35009253 - B1_Mus2 SINE Alu -4 143 1 3 1822 491 232 144 27 chr1 162186189 162186335 -35009097 - RSINE1 SINE B4 0 165 3 3 1822 222 152 0 0 chr1 162186619 162186652 -35008780 + PB1D7 SINE Alu 74 106 -14 3 1822 321 243 81 0 chr1 162186876 162186950 -35008482 - PB1 SINE Alu 0 127 48 3 1822 422 326 42 7 chr1 162187838 162187980 -35007452 - MER58A DNA MER1_type -14 210 64 3 1822 22 80 0 0 chr1 162188098 162188148 -35007284 + AT_rich Low_complexity Low_complexity 1 50 0 3 1822 444 202 62 27 chr1 162188280 162188392 -35007040 + B1F2 SINE Alu 34 149 0 3 1822 325 275 25 0 chr1 162188758 162188838 -35006594 - ID2 SINE ID 0 83 2 3 1822 407 19 19 0 chr1 162190028 162190080 -35005352 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1822 2198 53 4 0 chr1 162191318 162191584 -35003848 - L1Md_F2 LINE L1 -330 6252 5986 3 1822 2507 84 9 0 chr1 162191584 162191904 -35003528 + L1_Mus1 LINE L1 6245 6567 0 3 1822 36 40 0 0 chr1 162191904 162191954 -35003478 + AT_rich Low_complexity Low_complexity 1 50 0 3 1822 790 306 106 34 chr1 162191983 162192332 -35003100 + MLT1D LTR MaLR 7 380 -125 3 1822 230 326 67 94 chr1 162192604 162192924 -35002508 - Charlie9 DNA MER1_type -2387 370 57 3 1822 1291 119 119 5 chr1 162192924 162193126 -35002306 - URR1A DNA MER1_type -1 225 1 3 1822 230 326 67 94 chr1 162193126 162193147 -35002285 - Charlie9 DNA MER1_type -2701 56 38 3 1822 400 259 77 72 chr1 162193697 162193905 -35001527 - B4A SINE B4 0 292 84 3 1822 518 283 126 70 chr1 162194199 162194469 -35000963 + B4A SINE B4 1 285 -7 3 1822 1220 55 7 0 chr1 162194729 162194875 -35000557 - B1_Mus2 SINE Alu 0 147 1 3 1822 826 209 31 31 chr1 162194894 162195057 -35000375 - RSINE1 SINE B4 0 165 3 3 1822 30 0 0 0 chr1 162195091 162195121 -35000311 + AT_rich Low_complexity Low_complexity 1 30 0 3 1822 299 260 219 44 chr1 162195121 162195258 -35000174 + RSINE1 SINE B4 5 165 0 3 1822 238 0 53 26 chr1 162195411 162195449 -34999983 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1822 658 229 64 0 chr1 162195449 162195606 -34999826 - B3 SINE B2 -16 200 34 3 1822 1116 232 14 5 chr1 162195878 162196090 -34999342 + B3 SINE B2 2 215 -1 3 1822 365 221 17 11 chr1 162196211 162196324 -34999108 + B1F SINE Alu 31 149 0 3 1822 21 36 0 0 chr1 162196397 162196425 -34999007 + AT_rich Low_complexity Low_complexity 1 28 0 3 1822 1165 189 136 21 chr1 162196486 162196763 -34998669 - ORR1C2 LTR MaLR -2 382 73 3 1822 1136 194 37 0 chr1 162196763 162196980 -34998452 - URR1A DNA MER1_type -1 225 1 3 1822 2462 152 53 2 chr1 162198075 162198470 -34996962 + MTC LTR MaLR 3 417 -4 3 1822 244 330 140 26 chr1 162198695 162198888 -34996544 + L2 LINE L2 2658 2872 -547 3 1822 1061 96 14 142 chr1 162199222 162199441 -34995991 - B2_Mm2 SINE B2 -3 192 2 3 1822 342 0 0 0 chr1 162199461 162199499 -34995933 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1822 820 181 225 12 chr1 162200368 162200541 -34994891 + B3 SINE B2 1 210 -6 3 1822 21 0 0 0 chr1 162200837 162200858 -34994574 + AT_rich Low_complexity Low_complexity 1 21 0 3 1822 417 227 175 8 chr1 162200873 162200993 -34994439 + B1F1 SINE Alu 10 149 0 3 1822 656 282 61 14 chr1 162201913 162202125 -34993307 - MIR SINE MIR -29 233 12 3 1822 815 246 23 19 chr1 162202185 162202400 -34993032 + B3 SINE B2 1 216 0 3 1822 360 43 0 0 chr1 162202539 162202585 -34992847 + (CAA)n Simple_repeat Simple_repeat 3 48 0 3 1822 675 289 15 30 chr1 162202596 162202796 -34992636 + B3A SINE B2 2 198 0 3 1822 855 134 227 23 chr1 162202860 162203036 -34992396 - URR1A DNA MER1_type -8 218 7 3 1822 1179 76 0 33 chr1 162203220 162203370 -34992062 + B1_Mm SINE Alu 3 147 0 3 1822 260 329 14 0 chr1 162204478 162204551 -34990881 - ID2 SINE ID 0 83 10 3 1822 733 277 77 0 chr1 162204601 162204796 -34990636 + B3 SINE B2 1 210 -6 3 1822 521 222 83 0 chr1 162204825 162204933 -34990499 + ID_B1 SINE B4 82 198 -26 3 1822 1291 281 21 29 chr1 162204942 162205320 -34990112 + MTEa LTR MaLR 1 375 -4 3 1822 1042 87 254 44 chr1 162205474 162205679 -34989753 + RLTR23 LTR ERV1 3 250 -180 3 1822 231 254 16 0 chr1 162206682 162206745 -34988687 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1822 293 348 103 38 chr1 162206995 162207285 -34988147 - Tigger12c DNA MER2_type -165 569 261 3 1822 2189 27 4 0 chr1 162207448 162207706 -34987726 - L1_Mm LINE L1 -445 5438 5180 3 1822 4326 39 0 0 chr1 162207685 162208195 -34987237 + L1Md_T LINE L1 5862 6371 -211 3 1822 283 282 45 72 chr1 162208195 162208306 -34987126 + B1_Mm SINE Alu 27 134 -13 3 1822 403 311 0 0 chr1 162208865 162209042 -34986390 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1822 190 193 35 0 chr1 162209043 162209100 -34986332 + GA-rich Low_complexity Low_complexity 1 59 0 3 1822 390 299 33 40 chr1 162209287 162209437 -34985995 + B4A SINE B4 1 149 -143 3 1822 222 59 98 0 chr1 162209816 162209867 -34985565 + A-rich Low_complexity Low_complexity 5 60 0 3 1822 264 303 132 39 chr1 162211491 162211673 -34983759 + MTEa LTR MaLR 11 209 -170 3 1822 457 30 0 0 chr1 162211892 162211958 -34983474 + L1_Mus3 LINE L1 6573 6638 0 3 1822 6801 109 18 37 chr1 162212045 162213029 -34982403 + Lx4A LINE L1 6089 7054 -4 3 1822 255 211 254 24 chr1 162213067 162213159 -34982273 + L1ME1 LINE L1 5585 5705 -474 3 1822 3479 38 10 2 chr1 162213159 162213556 -34981876 - MTB LTR MaLR 0 400 1 3 1822 255 211 254 24 chr1 162213556 162213589 -34981843 + L1ME1 LINE L1 5706 5739 -440 3 1822 820 106 24 0 chr1 162213597 162213720 -34981712 + Lx9 LINE L1 7322 7447 -197 3 1822 243 0 0 0 chr1 162213727 162213754 -34981678 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1822 533 184 39 19 chr1 162213845 162214000 -34981432 + Lx9 LINE L1 7477 7634 -10 3 1822 481 303 99 11 chr1 162214036 162214339 -34981093 + L1ME1 LINE L1 5756 6086 -1909 3 1822 218 116 23 0 chr1 162214496 162214539 -34980893 + (GGA)n Simple_repeat Simple_repeat 2 45 0 3 1822 23 0 0 0 chr1 162214854 162214877 -34980555 + AT_rich Low_complexity Low_complexity 1 23 0 3 1822 294 291 70 0 chr1 162215411 162215497 -34979935 + RSINE1 SINE B4 63 154 -11 3 1822 560 168 21 0 chr1 162216097 162216192 -34979240 + B1_Mur1 SINE Alu 52 148 -1 3 1822 1218 216 0 27 chr1 162216211 162216430 -34979002 + B3 SINE B2 1 213 -3 3 1822 271 242 33 0 chr1 162217921 162218012 -34977420 + L1MB3 LINE L1 6090 6183 0 3 1822 886 108 90 30 chr1 162219249 162219383 -34976049 + B1_Mur4 SINE Alu 3 144 -6 3 1822 4147 92 41 2 chr1 162219383 162219940 -34975492 + L1_Mus3 LINE L1 6056 6634 -4 3 1822 242 56 28 0 chr1 162219973 162220009 -34975423 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 3 1822 200 143 24 0 chr1 162220009 162220051 -34975381 + GA-rich Low_complexity Low_complexity 1 43 0 3 1822 265 247 86 0 chr1 162220476 162220557 -34974875 + MIR SINE MIR 20 107 -155 3 1822 1397 264 32 13 chr1 162220653 162221029 -34974403 + L1M2 LINE L1 5388 5770 -530 3 1822 521 115 11 0 chr1 162221031 162221118 -34974314 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1822 346 224 0 15 chr1 162221495 162221563 -34973869 - RSINE1 SINE B4 -97 68 2 3 1822 377 250 0 0 chr1 162222845 162222917 -34972515 + PB1D7 SINE Alu 12 83 -37 3 1822 967 150 0 7 chr1 162223130 162223278 -34972154 + B1_Mus1 SINE Alu 2 148 0 3 1822 1184 50 0 0 chr1 162223330 162223471 -34971961 + B1_Mus2 SINE Alu 1 141 -6 3 1822 183 80 0 0 chr1 162223476 162223501 -34971931 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1822 271 263 0 0 chr1 162224150 162224207 -34971225 + ID2 SINE ID 24 80 -3 3 1822 1006 309 84 20 chr1 162224585 162225038 -34970394 + Charlie4a DNA MER1_type 27 508 0 3 1822 409 304 62 55 chr1 162225437 162225585 -34969847 + Kanga2_a DNA Tc2 234 383 -505 3 1822 601 296 30 69 chr1 162225585 162225817 -34969615 + ID_B1 SINE B4 2 224 0 3 1822 409 304 62 55 chr1 162225817 162225943 -34969489 + Kanga2_a DNA Tc2 384 510 -378 3 1822 501 259 177 29 chr1 162225953 162226128 -34969304 + B3 SINE B2 3 203 -13 3 1822 246 62 0 0 chr1 162226294 162226326 -34969106 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1822 336 224 56 9 chr1 162226384 162226492 -34968940 + L1MA7 LINE L1 6173 6285 -6 3 1822 28 0 0 0 chr1 162226494 162226522 -34968910 + AT_rich Low_complexity Low_complexity 1 28 0 3 1822 763 242 19 58 chr1 162226529 162226549 -34968883 - B3A SINE B2 0 198 179 3 1822 1622 181 91 26 chr1 162226549 162226900 -34968532 - ORR1D1 LTR MaLR 0 374 1 3 1822 763 242 19 58 chr1 162226900 162227085 -34968347 - B3A SINE B2 -20 178 2 3 1822 209 291 24 48 chr1 162227738 162227821 -34967611 + L2a LINE L2 3340 3420 -6 3 1822 257 284 182 40 chr1 162228324 162228500 -34966932 + MLT1A LTR MaLR 174 374 0 3 1822 259 354 20 20 chr1 162228923 162229086 -34966346 + MIRb SINE MIR 61 225 -43 3 1822 967 259 37 62 chr1 162229117 162229601 -34965831 - RLTR11B LTR ERVK -34 494 1 3 1822 270 278 176 101 chr1 162229737 162229767 -34965665 + B4 SINE B4 60 218 -74 4 1822 624 231 8 8 chr1 162229767 162229885 -34965547 + B1_Mur1 SINE Alu 24 141 -8 4 1822 329 305 6 6 chr1 162230546 162230714 -34964718 - L1ME2 LINE L1 -297 5867 5700 4 1822 369 0 0 0 chr1 162231743 162231784 -34963648 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1822 1903 220 34 3 chr1 162231784 162232167 -34963265 + MTD LTR MaLR 25 419 0 4 1822 290 229 271 15 chr1 162232757 162232893 -34962539 - MIRb SINE MIR -43 225 56 4 1822 709 300 50 21 chr1 162232938 162233180 -34962252 - B4 SINE B4 -4 288 40 4 1822 692 243 0 0 chr1 162233217 162233353 -34962079 + B1F SINE Alu 1 136 -13 4 1822 407 215 118 27 chr1 162233978 162234088 -34961344 + PB1 SINE Alu 1 120 -7 4 1822 514 283 45 76 chr1 162234330 162234487 -34960945 + RSINE1 SINE B4 3 154 -11 4 1822 360 239 134 0 chr1 162234793 162234927 -34960505 + RSINE1 SINE B4 12 163 -2 4 1822 503 179 56 9 chr1 162234960 162235067 -34960365 - PB1D9 SINE Alu -8 112 1 4 1822 22 0 0 0 chr1 162235067 162235089 -34960343 + AT_rich Low_complexity Low_complexity 1 22 0 4 1822 948 231 19 5 chr1 162235752 162235965 -34959467 + B3 SINE B2 1 216 0 4 1822 398 282 90 54 chr1 162236238 162236515 -34958917 - L1MC5 LINE L1 -216 7745 7459 4 1822 185 65 32 0 chr1 162236521 162236552 -34958880 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1822 24 53 0 0 chr1 162236803 162236841 -34958591 + AT_rich Low_complexity Low_complexity 1 38 0 4 1822 217 132 0 0 chr1 162242778 162242816 -34952616 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 4 1822 1822 208 44 10 chr1 162242816 162243200 -34952232 + MTD LTR MaLR 18 414 -5 4 1822 541 232 129 17 chr1 162243200 162243432 -34952000 + L1M2 LINE L1 4384 4641 -1502 4 1822 623 196 76 2 chr1 162243434 162243574 -34951858 - B1_Mus1 SINE Alu -1 149 1 4 1822 286 261 101 11 chr1 162243502 162243591 -34951841 - B4 SINE B4 -127 165 69 4 1822 270 0 0 0 chr1 162243605 162243635 -34951797 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1822 257 114 23 0 chr1 162243643 162243687 -34951745 + L1M2 LINE L1 4665 4709 -1434 4 1822 1156 253 78 7 chr1 162243688 162244138 -34951294 + L1MA6 LINE L1 5695 6176 -124 4 1822 982 190 39 0 chr1 162244142 162244321 -34951111 + B3 SINE B2 3 188 -28 4 1822 386 371 0 22 chr1 162244394 162244413 -34951019 + B4 SINE B4 67 82 -210 4 1822 592 207 12 157 chr1 162244413 162244579 -34950853 + B1_Mur1 SINE Alu 1 142 -7 4 1822 501 167 0 91 chr1 162245459 162245472 -34949960 - PB1D9 SINE Alu 0 120 110 4 1822 522 0 0 0 chr1 162245472 162245530 -34949902 + (GTTTG)n Simple_repeat Simple_repeat 1 58 0 4 1822 501 167 0 91 chr1 162245530 162245648 -34949784 - PB1D9 SINE Alu -11 109 1 4 1822 1111 213 15 0 chr1 162245717 162245919 -34949513 - B3 SINE B2 -11 205 1 4 1822 1052 234 10 0 chr1 162245966 162246175 -34949257 - B3 SINE B2 -5 211 1 4 1822 444 273 37 86 chr1 162246475 162246638 -34948794 - B3 SINE B2 0 216 54 4 1822 900 202 57 5 chr1 162246663 162246857 -34948575 - B3 SINE B2 -9 207 4 4 1822 1271 96 26 5 chr1 162246945 162247134 -34948298 - B2_Mm2 SINE B2 -2 193 1 4 1822 231 159 0 0 chr1 162247167 162247183 -34948249 + polypyrimidine Low_complexity Low_complexity 29 44 0 4 1822 626 0 0 13 chr1 162247183 162247258 -34948174 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 4 1822 231 159 0 0 chr1 162247258 162247285 -34948147 + polypyrimidine Low_complexity Low_complexity 2 28 0 4 1822 411 281 95 66 chr1 162247285 162247422 -34948010 - ID_B1 SINE B4 -1 223 83 4 1822 393 275 0 0 chr1 162247620 162247700 -34947732 - ID4 SINE ID -2 81 2 4 1822 273 29 0 0 chr1 162248897 162248931 -34946501 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1822 1103 58 15 0 chr1 162248931 162249068 -34946364 - B1_Mm SINE Alu -8 139 1 4 1822 1259 14 7 0 chr1 162249509 162249655 -34945777 + B1_Mus2 SINE Alu 1 147 0 4 1822 378 0 0 0 chr1 162249655 162249697 -34945735 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 4 1822 1021 245 0 0 chr1 162249703 162249891 -34945541 + B3 SINE B2 1 188 -28 4 1822 315 0 0 0 chr1 162249913 162249948 -34945484 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 4 1822 245 266 111 16 chr1 162250012 162250138 -34945294 + L1MA9 LINE L1 4850 4987 -1156 4 1822 778 229 99 0 chr1 162250141 162250333 -34945099 + B3 SINE B2 1 211 -5 4 1822 583 50 25 0 chr1 162250365 162250445 -34944987 + B1_Mus2 SINE Alu 66 147 0 4 1822 524 267 18 0 chr1 162250592 162250757 -34944675 + L1MA9 LINE L1 5131 5298 -842 4 1822 322 244 98 0 chr1 162250899 162250981 -34944451 + PB1D9 SINE Alu 29 118 -2 4 1822 336 182 222 0 chr1 162250982 162251081 -34944351 + L1MA9 LINE L1 5478 5598 -591 4 1822 971 108 0 33 chr1 162251194 162251347 -34944085 - B1_Mus1 SINE Alu 0 148 1 4 1822 408 224 13 0 chr1 162251370 162251446 -34943986 - PB1D10 SINE Alu -40 77 1 4 1822 230 209 0 0 chr1 162251636 162251679 -34943753 - PB1 SINE Alu 0 127 85 4 1822 375 149 46 0 chr1 162251788 162251875 -34943557 + CT-rich Low_complexity Low_complexity 2 92 0 4 1822 534 202 168 0 chr1 162251877 162251996 -34943436 - B1_Mur1 SINE Alu -6 143 5 4 1822 602 234 55 166 chr1 162251998 162252124 -34943308 + L1MA9 LINE L1 5660 5774 -415 4 1822 213 39 0 0 chr1 162252124 162252150 -34943282 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1822 402 57 0 0 chr1 162252154 162252207 -34943225 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1822 627 218 87 59 chr1 162252207 162252479 -34942953 + L1MA9 LINE L1 5775 6018 -171 4 1822 243 309 0 18 chr1 162252482 162252560 -34942872 - B1F2 SINE Alu -42 78 5 4 1822 360 225 138 92 chr1 162252800 162252952 -34942480 - B4A SINE B4 -129 163 5 4 1822 504 0 0 0 chr1 162252963 162253019 -34942413 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 4 1822 426 236 27 58 chr1 162253021 162253165 -34942267 - PB1D10 SINE Alu -9 140 1 4 1822 230 209 0 0 chr1 162253355 162253398 -34942034 - PB1 SINE Alu 0 127 85 4 1822 215 318 0 16 chr1 162253727 162253791 -34941641 - ID SINE ID -144 80 18 4 1822 21 0 0 0 chr1 162254066 162254087 -34941345 + AT_rich Low_complexity Low_complexity 1 21 0 4 1822 287 49 0 24 chr1 162254113 162254155 -34941277 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1822 513 222 0 10 chr1 162254556 162254656 -34940776 - B3A SINE B2 -95 103 5 4 1822 317 366 43 28 chr1 162255145 162255356 -34940076 + B4A SINE B4 1 214 -78 4 1822 900 159 0 14 chr1 162255385 162255532 -34939900 - B1_Mus1 SINE Alu -1 147 3 4 1822 266 302 67 34 chr1 162255533 162255622 -34939810 + B4A SINE B4 201 292 0 4 1822 1163 74 0 20 chr1 162256475 162256626 -34938806 + B1_Mus1 SINE Alu 1 148 0 4 1822 198 171 0 0 chr1 162256627 162256668 -34938764 + A-rich Low_complexity Low_complexity 1 41 0 4 1822 405 0 0 0 chr1 162257214 162257259 -34938173 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1822 659 281 0 7 chr1 162257265 162257401 -34938031 - RSINE1 SINE B4 -28 137 3 4 1822 318 287 23 11 chr1 162257403 162257491 -34937941 - PB1D10 SINE Alu -16 101 13 4 1822 496 256 66 29 chr1 162257778 162257915 -34937517 - RSINE1 SINE B4 -22 143 2 4 1822 189 362 42 11 chr1 162257933 162258028 -34937404 + L2c LINE L2 3083 3180 -207 4 1822 181 384 47 31 chr1 162258085 162258214 -34937218 + L2c LINE L2 3274 3404 -22 4 1822 510 17 0 0 chr1 162258665 162258724 -34936708 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1822 1424 243 7 0 chr1 162258798 162259086 -34936346 + B4 SINE B4 1 290 -2 4 1822 823 258 15 10 chr1 162259139 162259339 -34936093 - ID_B1 SINE B4 -23 201 1 4 1822 1492 58 5 10 chr1 162259408 162259440 -34935992 - B2_Mm1t SINE B2 -1 192 161 4 1822 459 0 0 0 chr1 162259440 162259491 -34935941 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1822 1492 58 5 10 chr1 162259491 162259651 -34935781 - B2_Mm1t SINE B2 -33 160 1 4 1822 331 343 43 38 chr1 162260264 162260449 -34934983 - MIRb SINE MIR -53 215 30 4 1822 612 296 150 37 chr1 162261348 162261674 -34933758 + MLT1B LTR MaLR 28 390 0 4 1822 377 206 74 71 chr1 162261772 162262081 -34933351 - RMER17D LTR ERVK -416 473 164 4 1822 809 221 12 41 chr1 162262657 162262827 -34932605 - B3 SINE B2 0 216 52 4 1822 2411 152 28 63 chr1 162262872 162263329 -34932103 - RLTR18B LTR ERVK -71 441 1 4 1822 339 211 0 0 chr1 162263329 162263384 -34932048 - B3A SINE B2 -143 55 1 4 1822 462 311 32 57 chr1 162264018 162264175 -34931257 + Tigger5 DNA MER2_type 2 154 -2252 4 1822 283 281 8 50 chr1 162264227 162264347 -34931085 + Tigger5 DNA MER2_type 2291 2405 -1 4 1822 35 24 0 0 chr1 162264514 162264556 -34930876 + AT_rich Low_complexity Low_complexity 1 42 0 4 1822 950 116 43 65 chr1 162265823 162266008 -34929424 + B2_Mm2 SINE B2 6 186 -9 4 1822 314 256 66 110 chr1 162266788 162266924 -34928508 + MER63B DNA AcHobo 307 436 0 4 1822 201 354 24 12 chr1 162266925 162267008 -34928424 + L2 LINE L2 1208 1291 -2128 4 1823 596 264 80 56 chr1 162267656 162267836 -34927596 - ID_B1 SINE B4 0 224 39 4 1823 1004 280 41 74 chr1 162267836 162268202 -34927230 + ORR1E LTR MaLR 4 357 -2 4 1823 596 264 80 56 chr1 162268202 162268234 -34927198 - ID SINE ID -186 38 7 4 1823 273 431 0 9 chr1 162268276 162268386 -34927046 + L2b LINE L2 3244 3352 -23 4 1823 774 214 14 0 chr1 162269825 162269970 -34925462 - B1_Mur1 SINE Alu 0 149 3 4 1823 288 302 85 17 chr1 162270262 162270380 -34925052 - PB1 SINE Alu -1 126 1 4 1823 323 241 241 0 chr1 162270637 162270745 -34924687 + B1F1 SINE Alu 3 136 -13 4 1823 369 346 164 12 chr1 162271079 162271516 -34923916 + L2a LINE L2 2810 3322 -104 4 1823 22 56 0 0 chr1 162272480 162272516 -34922916 + AT_rich Low_complexity Low_complexity 1 36 0 4 1823 300 27 0 0 chr1 162272582 162272619 -34922813 + (CAGAGA)n Simple_repeat Simple_repeat 2 38 0 4 1823 7247 87 5 10 chr1 162272907 162274622 -34920810 - L1_Mus3 LINE L1 -9 6629 4923 4 1823 2990 73 13 0 chr1 162274622 162275017 -34920415 + L1_Mus1 LINE L1 6168 6567 0 4 1823 269 281 12 35 chr1 162275023 162275108 -34920324 + ID4 SINE ID 1 83 0 5 1823 469 232 70 23 chr1 162275120 162275292 -34920140 - L1MA6 LINE L1 -161 6139 5960 5 1823 1533 130 0 0 chr1 162275302 162275541 -34919891 - L1_Mm LINE L1 -937 4946 4708 5 1823 273 185 147 32 chr1 162275563 162275658 -34919774 + L1ME4a LINE L1 5963 6068 -56 5 1823 1184 37 0 0 chr1 162275694 162275830 -34919602 + B1_Mm SINE Alu 3 138 -9 5 1823 206 32 32 0 chr1 162275830 162275861 -34919571 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1823 300 27 0 0 chr1 162275864 162275901 -34919531 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 5 1823 599 347 46 4 chr1 162276443 162276683 -34918749 - B4A SINE B4 -6 286 37 5 1823 201 39 0 0 chr1 162278295 162278321 -34917111 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1823 415 260 171 16 chr1 162279095 162279224 -34916208 - B1F SINE Alu 0 149 1 5 1823 21 57 0 0 chr1 162279229 162279264 -34916168 + AT_rich Low_complexity Low_complexity 1 35 0 5 1823 180 0 0 0 chr1 162280571 162280591 -34914841 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1823 423 0 0 0 chr1 162281871 162281918 -34913514 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1823 477 0 0 0 chr1 162281918 162281970 -34913462 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1823 234 0 0 0 chr1 162282841 162282867 -34912565 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1823 1125 66 0 0 chr1 162282867 162283004 -34912428 - B1_Mus2 SINE Alu -10 137 1 5 1823 755 170 50 36 chr1 162283155 162283295 -34912137 + B1_Mus1 SINE Alu 1 142 -6 5 1823 183 80 0 0 chr1 162283298 162283323 -34912109 + (CATA)n Simple_repeat Simple_repeat 4 28 0 5 1823 3076 73 7 23 chr1 162283529 162283962 -34911470 + L1_Mus2 LINE L1 6140 6565 -1 5 1823 268 250 239 0 chr1 162284254 162284342 -34911090 + PB1D10 SINE Alu 3 111 -6 5 1823 308 226 0 0 chr1 162284349 162284402 -34911030 + ID4 SINE ID 3 55 -28 5 1823 430 214 30 8 chr1 162284417 162284549 -34910883 + Lx9 LINE L1 7508 7642 -2 5 1823 396 88 0 0 chr1 162284620 162284677 -34910755 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1823 260 291 132 16 chr1 162284968 162285097 -34910335 - B1F2 SINE Alu -5 144 1 5 1823 568 158 9 0 chr1 162285778 162285892 -34909540 + Lx2 LINE L1 6883 6997 0 5 1823 688 281 90 49 chr1 162286072 162286501 -34908931 - MER34A1 LTR ERV1 -3 584 116 5 1823 2206 132 8 42 chr1 162286684 162287064 -34908368 + ORR1B2 LTR MaLR 1 367 0 5 1823 22 0 0 0 chr1 162287236 162287258 -34908174 + AT_rich Low_complexity Low_complexity 1 22 0 5 1823 234 319 148 35 chr1 162287639 162287808 -34907624 + MIRb SINE MIR 78 265 -3 5 1823 1131 110 81 0 chr1 162288075 162288248 -34907184 - B2_Mm2 SINE B2 -7 188 2 5 1823 838 88 33 20 chr1 162288281 162288431 -34907001 - RMER17B LTR ERVK -495 463 312 5 1823 242 222 0 53 chr1 162288687 162288744 -34906688 + MARNA DNA Mariner 191 244 -342 5 1823 183 262 151 23 chr1 162289065 162289151 -34906281 - L3 LINE CR1 -100 4389 4293 5 1823 261 227 42 14 chr1 162289198 162289386 -34906046 + (TA)n Simple_repeat Simple_repeat 1 193 0 5 1823 2203 187 32 2 chr1 162289386 162289793 -34905639 + MTC LTR MaLR 1 419 -2 5 1823 186 273 161 36 chr1 162289950 162290087 -34905345 - L3 LINE CR1 -278 4211 4058 5 1823 1406 84 16 0 chr1 162290461 162290652 -34904780 + B2_Mm2 SINE B2 1 194 -1 5 1823 286 274 24 0 chr1 162291836 162291920 -34903512 - MIRc SINE MIR -114 154 69 5 1823 240 342 15 174 chr1 162292104 162292215 -34903217 + MER34 LTR ERV1 260 357 -185 5 1823 1253 76 53 0 chr1 162292215 162292386 -34903046 + B2_Mm2 SINE B2 2 181 -14 5 1823 240 342 15 174 chr1 162292386 162292469 -34902963 + MER34 LTR ERV1 358 423 -119 5 1823 926 139 28 0 chr1 162292507 162292651 -34902781 - B1_Mus1 SINE Alu 0 148 1 5 1823 872 171 14 0 chr1 162293331 162293471 -34901961 - B1_Mur3 SINE Alu -7 142 1 5 1823 29 0 0 0 chr1 162293474 162293503 -34901929 + AT_rich Low_complexity Low_complexity 1 29 0 5 1823 2245 269 65 46 chr1 162294293 162294377 -34901055 + L1MA4 LINE L1 3596 3682 -2461 5 1823 606 63 0 0 chr1 162294377 162294456 -34900976 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 5 1823 2245 269 65 46 chr1 162294456 162294997 -34900435 + L1MA4 LINE L1 3683 4234 -1909 5 1823 1407 81 16 0 chr1 162294997 162295182 -34900250 + B2_Mm2 SINE B2 1 188 -7 5 1823 2245 269 65 46 chr1 162295182 162295850 -34899582 + L1MA4 LINE L1 4235 4914 -1229 5 1823 470 113 226 0 chr1 162295880 162295986 -34899446 + ORR1C1 LTR MaLR 1 130 -248 5 1823 647 88 35 0 chr1 162295987 162296100 -34899332 + (TA)n Simple_repeat Simple_repeat 2 118 0 5 1823 658 262 88 22 chr1 162296105 162296604 -34898828 + L1MA4 LINE L1 4958 5486 -814 5 1823 477 290 55 0 chr1 162296610 162296755 -34898677 + B3A SINE B2 19 171 -27 5 1823 1053 209 38 21 chr1 162296792 162297080 -34898352 + L1MA4 LINE L1 5484 5776 -524 5 1823 225 139 0 0 chr1 162297084 162297127 -34898305 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1823 296 298 110 34 chr1 162297180 162297326 -34898106 + L1MA4 LINE L1 5825 5981 -319 5 1823 324 286 16 66 chr1 162297327 162297448 -34897984 + PB1D10 SINE Alu 1 126 -21 5 1823 1138 189 39 9 chr1 162297479 162297709 -34897723 - Lx5 LINE L1 -8 7042 6806 5 1823 225 330 121 0 chr1 162298222 162298313 -34897119 + MLT1A1 LTR MaLR 307 408 0 5 1823 338 332 141 41 chr1 162298315 162298802 -34896630 + L2b LINE L2 2569 3107 -268 5 1823 423 258 31 33 chr1 162300436 162300586 -34894846 + ID_B1 SINE B4 26 220 -4 5 1823 334 254 59 124 chr1 162301012 162301165 -34894267 + RMER10B LTR ERVL 246 388 -10 5 1823 1070 68 0 20 chr1 162301332 162301481 -34893951 - B1_Mus1 SINE Alu -2 146 1 5 1823 271 297 0 7 chr1 162301481 162301522 -34893910 - ORR1B1-int LTR MaLR -863 646 607 5 1823 461 193 41 147 chr1 162301481 162301500 -34893932 - B4A SINE B4 -64 226 77 5 1823 332 138 15 0 chr1 162301530 162301595 -34893837 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1823 690 192 30 15 chr1 162301595 162301727 -34893705 - B1_Mur1 SINE Alu -1 148 15 5 1823 401 328 75 52 chr1 162302393 162302504 -34892928 + MLT1J LTR MaLR 74 185 -327 5 1823 1195 102 45 11 chr1 162302504 162302682 -34892750 + B2_Mm1t SINE B2 1 184 -9 5 1823 401 362 71 73 chr1 162302682 162302911 -34892521 + MLT1J LTR MaLR 147 370 -78 5 1823 29 47 0 0 chr1 162302958 162303001 -34892431 + AT_rich Low_complexity Low_complexity 1 43 0 5 1823 1690 81 89 0 chr1 162303013 162303272 -34892160 + BGLII_Mus LTR ERVK 141 422 0 5 1823 459 0 0 0 chr1 162304988 162305039 -34890393 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1823 596 264 23 0 chr1 162305157 162305286 -34890146 + B3 SINE B2 81 212 -4 5 1823 639 274 67 113 chr1 162305581 162305815 -34889617 - Lx7 LINE L1 -1483 5990 5780 5 1823 1069 90 14 0 chr1 162305815 162305960 -34889472 - B1_Mus1 SINE Alu 0 148 2 5 1823 639 264 67 105 chr1 162305960 162306179 -34889253 - Lx7 LINE L1 -475 5816 5589 5 1823 1430 80 16 0 chr1 162306179 162306367 -34889065 - B2_Mm2 SINE B2 -3 192 2 5 1823 522 274 96 136 chr1 162306367 162306496 -34888936 - Lx7 LINE L1 -700 5591 5487 5 1823 995 194 54 0 chr1 162306496 162306682 -34888750 - B3 SINE B2 -19 197 2 5 1823 522 274 96 136 chr1 162306682 162306810 -34888622 - Lx7 LINE L1 -805 5486 5347 5 1823 524 180 156 0 chr1 162306961 162307089 -34888343 - B1_Mur1 SINE Alu 0 149 2 5 1823 181 302 60 40 chr1 162307278 162307378 -34888054 - L2 LINE L2 -1723 1696 1595 5 1823 470 17 0 17 chr1 162308362 162308422 -34887010 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1823 1335 104 16 0 chr1 162308578 162308770 -34886662 + B2_Mm2 SINE B2 1 195 0 5 1823 795 273 121 8 chr1 162309084 162309324 -34886108 + MTE-int LTR MaLR 1 267 -1313 5 1823 2490 102 139 23 chr1 162309692 162310124 -34885308 + RLTR45 LTR ERVK 1 482 0 5 1823 580 289 8 0 chr1 162310829 162310950 -34884482 - RSINE1 SINE B4 -14 151 30 5 1823 751 114 19 57 chr1 162311326 162311484 -34883948 + RLTR45-int LTR ERVK 3835 3986 -3258 5 1823 6454 67 2 7 chr1 162311476 162312355 -34883077 + RLTR45-int LTR ERVK 5064 5938 -1306 5 1823 1373 147 29 0 chr1 162312364 162312609 -34882823 + ETnERV3-int LTR ERVK 5529 5780 -28 5 1823 1399 171 76 4 chr1 162312620 162312896 -34882536 + RLTR13B1 LTR ERVK 1 296 -597 5 1823 27103 41 2 1 chr1 162312905 162316435 -34878997 + L1Md_F3 LINE L1 2054 5586 -297 5 1823 8003 35 6 5 chr1 162316435 162317416 -34878016 + L1Md_F3 LINE L1 5587 6568 -16 5 1823 29 28 0 0 chr1 162317416 162317452 -34877980 + AT_rich Low_complexity Low_complexity 1 36 0 5 1823 1340 222 86 106 chr1 162317500 162318059 -34877373 + RLTR13B1 LTR ERVK 347 894 -8 5 1823 1373 312 79 50 chr1 162318163 162318837 -34876595 + MTE-int LTR MaLR 789 1481 -99 5 1823 1427 142 0 17 chr1 162318899 162319129 -34876303 + URR1A DNA MER1_type 1 226 0 5 1823 903 319 46 14 chr1 162319210 162319682 -34875750 + L1MA4A LINE L1 5486 5982 -315 5 1823 1233 48 0 0 chr1 162319684 162319830 -34875602 + B1_Mus2 SINE Alu 2 147 0 5 1823 363 96 0 0 chr1 162319830 162319882 -34875550 + (A)n Simple_repeat Simple_repeat 1 52 0 5 1823 1083 82 7 0 chr1 162320002 162320148 -34875284 + B1_Mus2 SINE Alu 1 147 0 5 1823 210 158 0 0 chr1 162320150 162320188 -34875244 + A-rich Low_complexity Low_complexity 1 38 0 5 1823 243 105 31 109 chr1 162321279 162321343 -34874089 + B3A SINE B2 1 59 -139 5 1823 194 265 245 0 chr1 162321454 162321552 -34873880 - MIRb SINE MIR -134 134 13 5 1823 448 254 85 0 chr1 162322082 162322200 -34873232 + RSINE1 SINE B4 5 132 -33 5 1823 1428 65 38 0 chr1 162322453 162322637 -34872795 - B2_Mm2 SINE B2 -3 192 2 5 1823 490 260 50 111 chr1 162322725 162323018 -34872414 + MTEb LTR MaLR 58 375 -4 5 1823 2813 33 0 9 chr1 162324559 162324900 -34870532 - L1Md_F3 LINE L1 -14 6570 6233 5 1823 35 31 0 44 chr1 162324972 162325040 -34870392 + AT_rich Low_complexity Low_complexity 1 65 0 5 1823 219 83 0 0 chr1 162325063 162325082 -34870350 + (A)n Simple_repeat Simple_repeat 1 19 0 5 1823 297 0 0 0 chr1 162325082 162325115 -34870317 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 1823 219 83 0 0 chr1 162325115 162325131 -34870301 + (A)n Simple_repeat Simple_repeat 1 16 0 5 1823 1009 295 111 38 chr1 162325236 162325733 -34869699 + RLTR40 LTR ERVK 19 551 -266 5 1823 21 0 0 0 chr1 162325823 162325844 -34869588 + AT_rich Low_complexity Low_complexity 1 21 0 5 1823 276 231 144 63 chr1 162325857 162325968 -34869464 + PB1D9 SINE Alu 1 120 0 5 1823 507 73 0 0 chr1 162325981 162326049 -34869383 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1823 202 180 32 32 chr1 162326105 162326168 -34869264 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 6 1823 1057 115 0 0 chr1 162326172 162326320 -34869112 - B1_Mus1 SINE Alu 0 148 1 6 1823 260 280 120 0 chr1 162326391 162326491 -34868941 + PB1D7 SINE Alu 1 112 -8 6 1823 243 0 0 0 chr1 162326683 162326710 -34868722 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1823 774 118 0 0 chr1 162326710 162326862 -34868570 + (GA)n Simple_repeat Simple_repeat 2 153 0 6 1823 2444 51 6 9 chr1 162326974 162327290 -34868142 + L1_Mus3 LINE L1 6320 6634 -4 6 1823 345 271 104 19 chr1 162328521 162328709 -34866723 + MLT1G LTR MaLR 1 251 -328 6 1823 434 257 176 32 chr1 162328941 162329374 -34866058 - L1MC4 LINE L1 -2 7880 7395 6 1823 261 119 0 0 chr1 162329532 162329574 -34865858 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1823 666 93 0 0 chr1 162330281 162330389 -34865043 + (TC)n Simple_repeat Simple_repeat 1 108 0 6 1823 237 293 17 0 chr1 162330389 162330447 -34864985 - ID SINE ID -164 60 2 6 1823 390 42 0 0 chr1 162330468 162330516 -34864916 + (TCCCC)n Simple_repeat Simple_repeat 3 50 0 6 1823 473 16 47 0 chr1 162330611 162330675 -34864757 + (CAAAA)n Simple_repeat Simple_repeat 3 69 0 6 1823 214 298 65 101 chr1 162330797 162330965 -34864467 + B4A SINE B4 1 162 -130 6 1823 222 118 0 0 chr1 162331161 162331195 -34864237 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1823 305 329 28 67 chr1 162331288 162331467 -34863965 + MER5B DNA MER1_type 1 172 -6 6 1823 1200 163 39 0 chr1 162331938 162332141 -34863291 + B3 SINE B2 2 212 -4 6 1823 739 160 0 0 chr1 162332149 162332268 -34863164 + URR1B DNA MER1_type 107 225 0 6 1823 371 223 204 9 chr1 162332471 162332584 -34862848 + B1_Mur1 SINE Alu 3 137 -12 6 1823 804 40 0 0 chr1 162334650 162334750 -34860682 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 6 1823 326 260 13 13 chr1 162335719 162335797 -34859635 - ID4_ SINE ID -5 78 1 6 1823 194 128 26 0 chr1 162335805 162335844 -34859588 + T-rich Low_complexity Low_complexity 4 43 0 6 1823 736 174 14 7 chr1 162335847 162335992 -34859440 - B1_Mus1 SINE Alu -2 146 1 6 1823 599 267 189 16 chr1 162336283 162336527 -34858905 - B4A SINE B4 -6 286 1 6 1823 333 362 0 45 chr1 162336649 162336759 -34858673 + PB1 SINE Alu 2 106 -21 6 1823 1199 29 0 0 chr1 162336950 162337088 -34858344 + B1_Mus2 SINE Alu 1 138 -9 6 1823 188 0 74 0 chr1 162337088 162337115 -34858317 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1823 684 128 0 0 chr1 162337234 162337367 -34858065 + (TC)n Simple_repeat Simple_repeat 2 134 0 6 1823 351 0 0 0 chr1 162337367 162337406 -34858026 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1823 277 302 155 21 chr1 162337847 162337989 -34857443 + MIR SINE MIR 102 262 0 6 1823 436 306 191 0 chr1 162338207 162338380 -34857052 + ID_B1 SINE B4 19 224 0 6 1823 339 301 142 17 chr1 162338751 162338927 -34856505 - L3b LINE CR1 -210 272 75 6 1823 375 287 0 44 chr1 162339550 162339641 -34855791 - B1_Mur3 SINE Alu -62 87 1 6 1823 547 234 219 0 chr1 162339820 162339957 -34855475 - B3 SINE B2 -5 211 45 6 1823 219 211 231 0 chr1 162340046 162340098 -34855334 - B3 SINE B2 -108 108 45 6 1823 317 244 178 0 chr1 162340093 162340183 -34855249 - B3 SINE B2 -108 108 3 6 1823 1140 85 0 0 chr1 162340304 162340529 -34854903 + (CA)n Simple_repeat Simple_repeat 1 225 0 6 1823 1206 78 0 0 chr1 162340555 162340735 -34854697 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1823 496 242 57 0 chr1 162340919 162341043 -34854389 - RSINE1 SINE B4 -33 132 2 6 1823 425 248 40 0 chr1 162342316 162342417 -34853015 - ID_B1 SINE B4 -28 196 92 6 1823 29 28 0 0 chr1 162342852 162342888 -34852544 + AT_rich Low_complexity Low_complexity 1 36 0 6 1823 1627 32 0 5 chr1 162342889 162343080 -34852352 - B2_Mm1t SINE B2 -2 191 2 6 1823 414 0 0 0 chr1 162343210 162343256 -34852176 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1823 405 0 0 0 chr1 162343256 162343300 -34852132 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1823 765 228 0 47 chr1 162344122 162344292 -34851140 + RSINE1 SINE B4 3 164 -1 6 1823 309 332 10 78 chr1 162344292 162344328 -34851104 + B3A SINE B2 2 193 -5 6 1823 489 260 117 8 chr1 162344357 162344485 -34850947 - B1F1 SINE Alu -7 142 1 6 1823 334 326 55 69 chr1 162345012 162345157 -34850275 + B1F SINE Alu 1 143 -6 6 1823 1049 313 108 93 chr1 162345197 162345948 -34849484 - RMER13A LTR ERVK -85 775 14 6 1823 312 233 201 22 chr1 162346267 162346451 -34848981 + Lx9 LINE L1 7213 7429 -215 6 1823 1038 51 0 28 chr1 162346783 162346925 -34848507 - L1_Mus1 LINE L1 -1 6566 6429 6 1823 565 280 30 0 chr1 162346964 162347096 -34848336 - RSINE1 SINE B4 -19 146 11 6 1823 359 298 0 12 chr1 162347136 162347221 -34848211 + B1F SINE Alu 1 84 -65 6 1823 478 79 13 13 chr1 162347966 162348043 -34847389 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1823 474 247 432 0 chr1 162348044 162348183 -34847249 - B3 SINE B2 -14 202 4 6 1823 233 254 141 91 chr1 162348246 162348288 -34847144 - L1M4 LINE L1 -1127 5019 4983 6 1823 267 31 0 0 chr1 162348288 162348320 -34847112 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1823 233 254 141 91 chr1 162348320 162348476 -34846956 - L1M4 LINE L1 -1164 4982 4811 6 1823 219 69 0 0 chr1 162348507 162348536 -34846896 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1823 305 282 141 0 chr1 162348615 162348700 -34846732 - PB1D10 SINE Alu -20 97 1 6 1823 2837 34 0 0 chr1 162349176 162349528 -34845904 + L1Md_F2 LINE L1 5235 5586 -297 6 1823 8218 43 0 0 chr1 162349528 162350512 -34844920 + L1Md_F2 LINE L1 5587 6570 -12 6 1823 189 0 0 0 chr1 162350528 162350549 -34844883 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1823 36921 7 1 1 chr1 162351452 162357442 -34837990 + L1Md_A LINE L1 1 5586 -297 6 1823 9055 3 0 0 chr1 162357442 162358438 -34836994 + L1Md_A LINE L1 5587 6582 0 6 1823 241 312 0 76 chr1 162359392 162359510 -34835922 + PB1D10 SINE Alu 1 109 -8 6 1823 4687 89 17 6 chr1 162359517 162360225 -34835207 - Lx4A LINE L1 -619 6439 5724 6 1823 2479 140 106 47 chr1 162360224 162360779 -34834653 + Lx4A LINE L1 6471 7058 0 6 1823 27 0 0 0 chr1 162360779 162360806 -34834626 + AT_rich Low_complexity Low_complexity 1 27 0 6 1823 298 231 15 0 chr1 162360839 162360904 -34834528 + tRNA-Ala-GCY_ tRNA tRNA 8 73 -2 6 1823 487 178 11 53 chr1 162362675 162362770 -34832662 + B2_Mm2 SINE B2 5 95 -100 6 1823 218 332 123 14 chr1 162363244 162363455 -34831977 + L2a LINE L2 2604 2837 -582 6 1823 277 273 118 59 chr1 162363466 162363618 -34831814 + L2a LINE L2 3219 3379 -47 6 1823 237 280 211 21 chr1 162363707 162363897 -34831535 - L1M2 LINE L1 -1228 4915 4690 6 1823 3837 174 25 41 chr1 162365152 162365929 -34829503 + Lx6 LINE L1 6255 7018 -442 6 1823 717 195 156 14 chr1 162365928 162366146 -34829286 + Lx7 LINE L1 7448 7696 0 6 1823 252 319 44 0 chr1 162366357 162366470 -34828962 + L1M5 LINE L1 5568 5685 -488 6 1823 182 62 0 30 chr1 162367379 162367412 -34828020 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 6 1823 739 260 158 96 chr1 162367882 162368966 -34826466 + Lx7 LINE L1 4426 5521 -326 6 1823 430 284 101 17 chr1 162369006 162369185 -34826247 + MTD LTR MaLR 18 211 -208 6 1823 573 269 75 9 chr1 162369227 162369527 -34825905 + Lx7 LINE L1 5583 5879 -421 6 1823 382 211 27 71 chr1 162370872 162370984 -34824448 - PB1D9 SINE Alu -12 108 2 6 1823 536 324 12 0 chr1 162372579 162372752 -34822680 + B3A SINE B2 2 176 -22 6 1823 537 30 0 0 chr1 162372756 162372823 -34822609 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1823 213 65 0 0 chr1 162372945 162372976 -34822456 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 1823 364 261 86 17 chr1 162374252 162374369 -34821063 + ID_B1 SINE B4 100 224 0 6 1823 25 51 0 0 chr1 162374655 162374694 -34820738 + AT_rich Low_complexity Low_complexity 1 39 0 6 1823 1409 75 11 0 chr1 162375223 162375409 -34820023 - B2_Mm2 SINE B2 -7 188 1 6 1823 183 324 48 29 chr1 162375687 162375792 -34819640 - MIRb SINE MIR -61 207 101 6 1823 261 287 75 0 chr1 162375894 162375988 -34819444 - MIRb SINE MIR -77 191 91 6 1823 254 137 0 19 chr1 162376331 162376367 -34819065 + polypyrimidine Low_complexity Low_complexity 17 52 0 6 1823 1186 55 0 7 chr1 162376367 162376514 -34818918 - B1_Mus2 SINE Alu -1 146 1 6 1823 254 137 0 19 chr1 162376514 162376529 -34818903 + polypyrimidine Low_complexity Low_complexity 3 16 0 6 1823 180 0 0 0 chr1 162376536 162376556 -34818876 + (TTA)n Simple_repeat Simple_repeat 2 21 0 6 1823 685 249 71 6 chr1 162376572 162376742 -34818690 - B3A SINE B2 -16 182 2 6 1823 22 0 0 0 chr1 162376914 162376936 -34818496 + AT_rich Low_complexity Low_complexity 1 22 0 6 1823 1324 217 6 39 chr1 162377013 162377349 -34818083 + Lx4B LINE L1 6732 7056 -2 6 1823 324 344 40 35 chr1 162377352 162377578 -34817854 - L1ME3B LINE L1 -148 6092 5866 6 1823 437 287 62 14 chr1 162378851 162378996 -34816436 + RMER15 LTR ERVL 279 430 -145 6 1823 7475 71 18 1 chr1 162379600 162381270 -34814162 + L1_Mus1 LINE L1 4867 6565 -2 6 1823 24 67 0 0 chr1 162382081 162382126 -34813306 + AT_rich Low_complexity Low_complexity 1 45 0 6 1823 3026 193 49 14 chr1 162382611 162382863 -34812569 + Lx5 LINE L1 6389 6647 -403 6 1823 3365 40 2 0 chr1 162382863 162383258 -34812174 + MTA_Mm LTR MaLR 1 396 0 6 1823 3026 193 49 14 chr1 162383258 162383642 -34811790 + Lx5 LINE L1 6648 7047 -3 6 1823 213 229 0 0 chr1 162383670 162383718 -34811714 + GA-rich Low_complexity Low_complexity 3 50 0 6 1823 244 306 216 0 chr1 162384404 162384538 -34810894 - RMER30 DNA MER1_type -38 164 2 6 1823 231 269 14 13 chr1 162385285 162385374 -34810058 - BC1_Mm scRNA scRNA -60 92 3 6 1823 217 250 39 0 chr1 162385936 162385988 -34809444 + GA-rich Low_complexity Low_complexity 2 55 0 7 1823 251 309 20 106 chr1 162386231 162386430 -34809002 + YREP_Mm Unknown Unknown 115 296 -1516 7 1823 920 123 14 28 chr1 162386299 162386441 -34808991 - B1_Mur3 SINE Alu 0 149 10 7 1823 424 211 19 95 chr1 162386347 162386452 -34808980 - MT2B LTR ERVL -343 258 162 7 1823 279 287 0 8 chr1 162386452 162386466 -34808966 - ORR1B1-int LTR MaLR -755 750 633 7 1823 41 87 0 0 chr1 162387082 162387186 -34808246 + AT_rich Low_complexity Low_complexity 1 104 0 7 1823 441 0 0 0 chr1 162387287 162387336 -34808096 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1823 682 287 198 19 chr1 162387352 162387572 -34807860 + MER82 DNA MER2_type 17 265 -388 7 1823 684 0 0 0 chr1 162387572 162387648 -34807784 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 1823 682 287 198 19 chr1 162387648 162387800 -34807632 + MER82 DNA MER2_type 266 455 -198 7 1823 1947 81 65 22 chr1 162388010 162388288 -34807144 + L1_Mus1 LINE L1 6278 6567 0 7 1823 21 36 0 0 chr1 162388634 162388662 -34806770 + AT_rich Low_complexity Low_complexity 1 28 0 7 1823 198 323 86 8 chr1 162388912 162389040 -34806392 - L2a LINE L2 -73 3353 3216 7 1823 1451 181 112 24 chr1 162389099 162389473 -34805959 - Lx9 LINE L1 -61 7583 7177 7 1823 309 313 38 38 chr1 162389527 162389660 -34805772 - L2a LINE L2 -282 3144 3012 7 1823 306 24 81 35 chr1 162389717 162389803 -34805629 + (TTTG)n Simple_repeat Simple_repeat 3 92 0 7 1823 189 323 161 51 chr1 162389821 162389958 -34805474 - L2a LINE L2 -684 2735 2584 7 1823 291 280 136 0 chr1 162390085 162390217 -34805215 + L1M4 LINE L1 19 168 -6374 7 1823 329 310 85 24 chr1 162390558 162390806 -34804626 + L1M4 LINE L1 648 910 -5632 7 1823 255 246 284 0 chr1 162390902 162391036 -34804396 + L1MB7 LINE L1 5996 6167 -17 7 1823 211 0 28 56 chr1 162391042 162391078 -34804354 + (TAAAAA)n Simple_repeat Simple_repeat 4 38 0 7 1823 228 135 0 0 chr1 162391100 162391137 -34804295 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1823 282 147 0 0 chr1 162391136 162391204 -34804228 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1823 876 317 34 21 chr1 162391222 162391605 -34803827 + L1MC4 LINE L1 6665 7052 -990 7 1823 315 342 49 21 chr1 162391880 162392206 -34803226 + L1MC4 LINE L1 7262 7596 -446 7 1823 5305 54 34 37 chr1 162392246 162393236 -34802196 + Lx3_Mus LINE L1 5195 6185 -824 7 1823 198 71 0 0 chr1 162393833 162393861 -34801571 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1823 284 286 98 22 chr1 162394621 162394745 -34800687 - B1F1 SINE Alu -5 122 2 7 1823 966 243 61 12 chr1 162394794 162395040 -34800392 + B4 SINE B4 32 289 -3 7 1823 215 326 0 23 chr1 162395041 162395129 -34800303 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 7 1824 292 278 92 10 chr1 162399871 162399969 -34795463 + RSINE1 SINE B4 58 163 -2 7 1824 212 85 62 21 chr1 162400036 162400084 -34795348 + (CTATA)n Simple_repeat Simple_repeat 1 50 0 7 1824 30 0 0 0 chr1 162400496 162400526 -34794906 + AT_rich Low_complexity Low_complexity 1 30 0 7 1824 31 92 0 0 chr1 162400816 162400903 -34794529 + AT_rich Low_complexity Low_complexity 1 87 0 7 1824 398 53 0 17 chr1 162400939 162400997 -34794435 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1824 201 238 41 8 chr1 162401185 162401308 -34794124 + GA-rich Low_complexity Low_complexity 5 131 0 7 1824 845 150 0 5 chr1 162402362 162402550 -34792882 + GA-rich Low_complexity Low_complexity 1 187 0 7 1824 720 238 48 0 chr1 162402578 162402725 -34792707 + RSINE1 SINE B4 12 165 0 7 1824 252 335 77 72 chr1 162402725 162402769 -34792663 + B3A SINE B2 11 201 -15 7 1824 693 153 0 0 chr1 162402769 162402945 -34792487 + (CAGAGA)n Simple_repeat Simple_repeat 3 178 0 7 1824 786 159 0 0 chr1 162402908 162403263 -34792169 + (CA)n Simple_repeat Simple_repeat 1 355 0 7 1824 316 89 0 0 chr1 162403272 162403317 -34792115 + HAL1-3A_ME LINE L1 1976 2020 -838 7 1824 458 33 17 0 chr1 162403425 162403485 -34791947 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1824 21 0 0 0 chr1 162403660 162403681 -34791751 + AT_rich Low_complexity Low_complexity 1 21 0 7 1824 594 306 33 16 chr1 162403765 162403802 -34791630 - B3A SINE B2 -8 190 156 7 1824 200 34 0 33 chr1 162403802 162403832 -34791600 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1824 594 306 33 16 chr1 162403832 162403977 -34791455 - B3A SINE B2 -43 155 5 7 1824 271 304 78 0 chr1 162404105 162404207 -34791225 - PB1D10 SINE Alu -7 110 1 7 1824 16473 66 2 1 chr1 162405115 162407244 -34788188 + L1Md_F2 LINE L1 3454 5585 -298 7 1824 7533 68 14 3 chr1 162407245 162408224 -34787208 + L1Md_F2 LINE L1 5587 6576 -6 7 1824 7485 138 27 80 chr1 162408685 162411356 -34784076 - L1Md_F2 LINE L1 0 6582 4082 7 1824 2220 162 184 13 chr1 162411381 162411849 -34783583 + RMER1B Other Other 497 1044 -22 7 1824 21 0 0 0 chr1 162412522 162412543 -34782889 + AT_rich Low_complexity Low_complexity 1 21 0 7 1824 324 253 38 0 chr1 162412683 162412762 -34782670 + ID4_ SINE ID 2 83 0 7 1824 518 288 59 111 chr1 162412931 162413220 -34782212 - B4 SINE B4 -17 275 2 7 1824 198 311 131 36 chr1 162414209 162414346 -34781086 + L2c LINE L2 3014 3163 -224 7 1824 192 40 0 0 chr1 162416539 162416564 -34778868 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1824 547 244 22 7 chr1 162416630 162416766 -34778666 - B1_Mur1 SINE Alu -7 142 5 7 1824 10438 65 12 54 chr1 162416911 162419195 -34776237 - L1Md_F3 LINE L1 -16 6568 4407 7 1824 5086 67 6 0 chr1 162419175 162419843 -34775589 + L1Md_F3 LINE L1 3743 4414 -1469 7 1824 183 184 0 0 chr1 162419919 162419957 -34775475 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1824 376 333 32 82 chr1 162420260 162420479 -34774953 - RMER4A LTR ERVK -246 220 13 7 1824 234 180 101 0 chr1 162421049 162421138 -34774294 + Lx9 LINE L1 7547 7644 0 7 1824 273 343 50 0 chr1 162421184 162421283 -34774149 - B1_Mur1 SINE Alu -13 136 33 7 1824 180 0 0 0 chr1 162421300 162421320 -34774112 + (TTTAA)n Simple_repeat Simple_repeat 5 24 0 7 1824 335 271 101 42 chr1 162421321 162421510 -34773922 - MER33 DNA MER1_type -108 216 17 7 1824 223 260 24 61 chr1 162422203 162422285 -34773147 + B1_Mur2 SINE Alu 15 93 -56 7 1824 298 274 14 14 chr1 162422221 162422295 -34773137 + ID_B1 SINE B4 137 210 -14 7 1824 240 158 0 0 chr1 162422295 162422352 -34773080 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 7 1824 243 103 0 0 chr1 162422645 162422684 -34772748 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1824 1118 96 0 0 chr1 162422684 162422830 -34772602 - B1_Mus2 SINE Alu 0 147 2 7 1824 226 339 122 30 chr1 162423294 162423425 -34772007 - MLT1A1 LTR MaLR -265 143 1 7 1824 208 325 151 0 chr1 162424310 162424436 -34770996 + L2 LINE L2 2330 2474 -945 7 1824 252 304 64 69 chr1 162424597 162424770 -34770662 - L1ME1 LINE L1 -164 6015 5844 7 1824 230 316 93 36 chr1 162424779 162424973 -34770459 - L1M4 LINE L1 -297 5881 5677 7 1824 272 240 247 14 chr1 162425093 162425410 -34770022 - L1M4 LINE L1 -738 5446 5056 7 1824 225 0 0 0 chr1 162425440 162425465 -34769967 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1824 572 253 128 11 chr1 162425781 162425969 -34769463 + B3 SINE B2 1 210 -6 7 1824 447 281 188 0 chr1 162426065 162426193 -34769239 - RSINE1 SINE B4 -2 163 12 7 1824 952 124 21 0 chr1 162426264 162426409 -34769023 + B1_Mur4 SINE Alu 1 148 -2 7 1824 510 96 0 0 chr1 162426410 162426483 -34768949 + (GAAAA)n Simple_repeat Simple_repeat 3 75 0 7 1824 877 214 77 0 chr1 162426700 162426896 -34768536 - B3 SINE B2 -5 211 1 7 1824 350 293 24 0 chr1 162427676 162427758 -34767674 - B3 SINE B2 -30 186 103 7 1824 276 266 13 0 chr1 162427918 162427997 -34767435 + ID2 SINE ID 3 82 -1 7 1824 185 259 74 0 chr1 162428024 162428078 -34767354 - MIR3 SINE MIR -8 200 143 7 1824 1334 82 33 0 chr1 162428185 162428367 -34767065 + B2_Mm2 SINE B2 1 188 -7 7 1824 27 0 0 0 chr1 162428956 162428983 -34766449 + AT_rich Low_complexity Low_complexity 1 27 0 7 1824 414 252 44 7 chr1 162429041 162429177 -34766255 + L1ME2z LINE L1 6296 6436 -8 7 1824 204 40 0 0 chr1 162429235 162429260 -34766172 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1824 259 268 39 0 chr1 162429608 162429695 -34765737 + L1ME2z LINE L1 5875 5964 -198 7 1824 185 375 62 12 chr1 162430387 162430468 -34764964 + L2b LINE L2 3244 3328 -47 7 1824 440 272 151 22 chr1 162430645 162430784 -34764648 + RSINE1 SINE B4 9 165 0 7 1824 1573 173 123 18 chr1 162430892 162431234 -34764198 + ORR1C1 LTR MaLR 1 378 0 7 1824 254 311 68 0 chr1 162431453 162431527 -34763905 - ID4 SINE ID -3 80 2 7 1824 235 342 60 17 chr1 162432042 162432158 -34763274 - RMER12 LTR ERVK -470 852 732 7 1824 289 292 87 34 chr1 162432169 162432318 -34763114 - MamRep434 DNA TcMar -152 274 118 7 1824 495 0 0 0 chr1 162432464 162432519 -34762913 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1824 663 290 112 15 chr1 162433267 162433526 -34761906 + B4 SINE B4 2 285 -7 7 1824 23 54 0 0 chr1 162434823 162434860 -34760572 + AT_rich Low_complexity Low_complexity 1 37 0 7 1824 369 312 111 45 chr1 162434976 162435265 -34760167 - MLT1J LTR MaLR -65 447 140 7 1824 3060 82 0 17 chr1 162435453 162435872 -34759560 + L1_Mus1 LINE L1 6156 6567 0 7 1824 392 316 24 0 chr1 162436115 162436283 -34759149 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 1824 218 356 25 86 chr1 162436523 162436686 -34758746 - MIRb SINE MIR -2 266 114 7 1824 237 291 0 30 chr1 162436886 162436956 -34758476 - MIRc SINE MIR -159 109 39 7 1824 28 0 0 0 chr1 162437041 162437069 -34758363 + AT_rich Low_complexity Low_complexity 1 28 0 7 1824 228 67 0 0 chr1 162437082 162437112 -34758320 + (TAA)n Simple_repeat Simple_repeat 3 32 0 7 1824 755 289 145 8 chr1 162437172 162437538 -34757894 + L1MB4 LINE L1 5764 6179 -1 7 1824 452 282 68 0 chr1 162439274 162439391 -34756041 + B3A SINE B2 1 125 -73 7 1824 203 79 26 0 chr1 162439434 162439472 -34755960 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 7 1824 409 225 17 51 chr1 162439638 162439755 -34755677 - PB1D10 SINE Alu 0 117 5 7 1824 233 275 10 90 chr1 162440038 162440138 -34755294 - MLT1A1 LTR MaLR -315 93 2 8 1824 337 286 82 15 chr1 162440828 162440963 -34754469 + MIR SINE MIR 69 212 -50 8 1824 405 0 0 0 chr1 162441223 162441268 -34754164 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1824 229 229 549 60 chr1 162441599 162441699 -34753733 - MIR SINE MIR -109 167 19 8 1824 554 274 39 39 chr1 162441838 162442020 -34753412 - B3A SINE B2 -16 182 1 8 1824 3441 32 0 0 chr1 162442178 162442583 -34752849 - L1Md_F2 LINE L1 -539 6043 5639 8 1824 3270 68 55 38 chr1 162442584 162443060 -34752372 + L1Md_F2 LINE L1 6099 6582 0 8 1824 256 203 169 0 chr1 162443134 162443193 -34752239 + MER20 DNA MER1_type 1 69 -150 8 1824 564 312 23 0 chr1 162443296 162443424 -34752008 - RSINE1 SINE B4 -22 143 13 8 1824 247 347 32 16 chr1 162443425 162443551 -34751881 + MER20 DNA MER1_type 92 219 0 8 1824 238 200 32 32 chr1 162443612 162443674 -34751758 - PB1D7 SINE Alu -10 110 49 8 1824 1523 226 85 11 chr1 162443957 162444320 -34751112 + Lx8 LINE L1 6637 7026 -447 8 1824 245 320 242 5 chr1 162444378 162444576 -34750856 + Lx8 LINE L1 7113 7357 -116 8 1824 222 42 41 41 chr1 162444588 162444637 -34750795 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 8 1824 4156 169 73 23 chr1 162446367 162447228 -34748204 + RMER13B LTR ERVK 5 908 0 8 1824 532 333 88 30 chr1 162447244 162447507 -34747925 + B4A SINE B4 5 282 -10 8 1824 324 0 0 0 chr1 162447520 162447556 -34747876 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1824 3836 50 16 4 chr1 162447628 162448112 -34747320 + L1Md_F2 LINE L1 6070 6559 -23 8 1824 351 0 0 0 chr1 162448112 162448151 -34747281 + (TAA)n Simple_repeat Simple_repeat 1 39 0 8 1824 210 80 39 20 chr1 162449096 162449147 -34746285 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 8 1824 513 0 0 0 chr1 162450243 162450300 -34745132 + (T)n Simple_repeat Simple_repeat 1 57 0 8 1824 352 257 77 34 chr1 162450655 162450772 -34744660 - L1MD LINE L1 -3115 3031 2910 8 1824 760 275 62 26 chr1 162451498 162451692 -34743740 + B4A SINE B4 3 203 -89 8 1824 25 65 0 0 chr1 162452012 162452058 -34743374 + AT_rich Low_complexity Low_complexity 1 46 0 8 1824 1407 85 16 0 chr1 162452978 162453166 -34742266 - B2_Mm2 SINE B2 -4 191 1 8 1824 28 48 0 0 chr1 162453803 162453845 -34741587 + AT_rich Low_complexity Low_complexity 1 42 0 8 1824 255 79 0 0 chr1 162454008 162454046 -34741386 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1824 910 300 38 42 chr1 162454962 162455275 -34740157 + MTEa LTR MaLR 60 371 -8 8 1824 393 22 0 0 chr1 162455285 162455331 -34740101 + (TGG)n Simple_repeat Simple_repeat 3 48 0 8 1824 405 58 0 0 chr1 162455329 162455381 -34740051 + (GGA)n Simple_repeat Simple_repeat 1 52 0 8 1824 203 229 0 0 chr1 162455387 162455422 -34740010 + (CGG)n Simple_repeat Simple_repeat 2 36 0 8 1824 298 269 13 0 chr1 162455463 162455541 -34739891 + B4A SINE B4 9 87 -205 8 1824 2536 197 37 28 chr1 162455550 162455924 -34739508 + Lx9 LINE L1 6554 6931 -713 8 1824 1053 157 39 69 chr1 162455924 162456157 -34739275 + URR1A DNA MER1_type 1 226 0 8 1824 2536 197 37 28 chr1 162456157 162456319 -34739113 + Lx9 LINE L1 6932 7095 -549 8 1824 21 0 0 0 chr1 162456477 162456498 -34738934 + AT_rich Low_complexity Low_complexity 1 21 0 8 1824 3599 216 75 21 chr1 162456586 162457450 -34737982 + Lx7 LINE L1 6539 7449 -247 8 1824 33 43 0 0 chr1 162457575 162457622 -34737810 + AT_rich Low_complexity Low_complexity 1 47 0 8 1824 185 358 29 92 chr1 162457733 162457939 -34737493 - MIRc SINE MIR -62 206 14 8 1824 525 266 141 21 chr1 162458496 162458688 -34736744 - B3 SINE B2 -1 215 1 8 1824 666 300 67 22 chr1 162459281 162459642 -34735790 + L1MA6 LINE L1 5871 6247 -53 8 1824 330 387 8 0 chr1 162459789 162459913 -34735519 + PB1 SINE Alu 1 125 -2 8 1824 21 71 0 0 chr1 162460799 162460841 -34734591 + AT_rich Low_complexity Low_complexity 1 42 0 8 1824 264 100 0 0 chr1 162461236 162461276 -34734156 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1824 219 65 0 0 chr1 162461524 162461532 -34733900 + (TA)n Simple_repeat Simple_repeat 2 9 0 8 1824 312 27 0 0 chr1 162461532 162461569 -34733863 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1824 219 65 0 0 chr1 162461569 162461591 -34733841 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1824 194 105 26 0 chr1 162461905 162461943 -34733489 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1824 21 82 0 0 chr1 162462085 162462134 -34733298 + AT_rich Low_complexity Low_complexity 1 49 0 8 1824 288 266 0 0 chr1 162462351 162462415 -34733017 + ID4 SINE ID 2 65 -18 8 1824 606 168 33 25 chr1 162463190 162463312 -34732120 - RMER1C Other Other -15 1327 1205 8 1824 623 332 114 4 chr1 162463589 162463843 -34731589 + B4A SINE B4 8 289 -3 8 1824 21 71 0 0 chr1 162464384 162464426 -34731006 + AT_rich Low_complexity Low_complexity 1 42 0 8 1824 1099 62 14 0 chr1 162466901 162467046 -34728386 - B1_Mm SINE Alu 0 147 1 8 1824 6222 88 16 3 chr1 162467460 162468373 -34727059 + L1VL4 LINE L1 210 1137 -2422 8 1824 3156 58 2 2 chr1 162468373 162468767 -34726665 + MTA_Mm LTR MaLR 3 396 0 8 1824 6222 70 19 0 chr1 162468767 162469381 -34726051 + L1VL4 LINE L1 1138 1760 -1799 8 1824 2951 64 0 8 chr1 162469404 162469800 -34725632 - L1_Mus3 LINE L1 -6 6632 6240 8 1824 417 274 122 20 chr1 162469826 162470079 -34725353 + Charlie1a DNA MER1_type 1177 1455 0 8 1824 7724 62 2 17 chr1 162470429 162471634 -34723798 + L1_Mus2 LINE L1 5378 6565 -1 8 1824 460 326 93 21 chr1 162471654 162471945 -34723487 + Lx8 LINE L1 6189 6500 -973 8 1824 461 349 109 39 chr1 162471974 162472138 -34723294 + Lx8 LINE L1 6891 7064 -409 8 1824 1774 139 125 58 chr1 162472138 162472498 -34722934 + ORR1C2 LTR MaLR 1 384 0 8 1824 461 349 109 39 chr1 162472498 162472872 -34722560 + Lx8 LINE L1 7065 7467 -6 8 1824 22 35 0 0 chr1 162472896 162472925 -34722507 + AT_rich Low_complexity Low_complexity 1 29 0 8 1824 222 37 0 0 chr1 162472981 162473008 -34722424 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1824 1612 227 52 0 chr1 162473011 162473355 -34722077 - MTD LTR MaLR -57 362 1 8 1824 287 177 16 0 chr1 162476455 162476517 -34718915 + GA-rich Low_complexity Low_complexity 1 63 0 8 1824 677 282 11 32 chr1 162478747 162478934 -34716498 + B3A SINE B2 1 183 -15 8 1824 372 59 0 0 chr1 162479031 162479082 -34716350 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1824 231 237 33 17 chr1 162479249 162479309 -34716123 + MTE2a LTR MaLR 316 376 -3 8 1824 309 169 0 0 chr1 162479508 162479538 -34715894 + T-rich Low_complexity Low_complexity 42 71 0 8 1824 1163 62 7 0 chr1 162479538 162479684 -34715748 - B1_Mus2 SINE Alu 0 147 1 8 1824 309 169 0 0 chr1 162479684 162479724 -34715708 + T-rich Low_complexity Low_complexity 2 41 0 8 1824 608 169 32 3 chr1 162479732 162479857 -34715575 - B1_Mur1 SINE Alu 0 149 8 8 1824 242 313 36 12 chr1 162480723 162480807 -34714625 + MLT1A0 LTR MaLR 19 104 -261 8 1824 23 54 0 0 chr1 162482395 162482432 -34713000 + AT_rich Low_complexity Low_complexity 1 37 0 8 1824 218 321 27 54 chr1 162483261 162483373 -34712059 - L2c LINE L2 -9 3378 3270 8 1824 278 293 101 43 chr1 162483459 162483598 -34711834 + B1F1 SINE Alu 3 149 0 8 1824 719 282 75 117 chr1 162483715 162484141 -34711291 + MTD LTR MaLR 12 419 0 8 1824 1410 275 59 7 chr1 162485879 162486318 -34709114 - L1_Mus3 LINE L1 -544 7152 6691 8 1824 7783 106 20 14 chr1 162486316 162487611 -34707821 - L1_Mus3 LINE L1 0 6638 5610 8 1824 5143 224 108 42 chr1 162487611 162488744 -34706688 - Lx7 LINE L1 -1547 6149 4883 8 1824 276 53 0 0 chr1 162488751 162488789 -34706643 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1824 1114 68 7 0 chr1 162488789 162488928 -34706504 - B1_Mus1 SINE Alu -7 141 2 8 1824 5143 210 127 49 chr1 162488928 162489742 -34705690 - Lx7 LINE L1 -998 4882 4066 8 1824 215 165 0 96 chr1 162489798 162489892 -34705540 + T-rich Low_complexity Low_complexity 2 86 0 8 1824 27 62 0 0 chr1 162489967 162490015 -34705417 + AT_rich Low_complexity Low_complexity 1 48 0 8 1824 31 44 0 0 chr1 162490701 162490746 -34704686 + AT_rich Low_complexity Low_complexity 1 45 0 8 1824 21 71 0 0 chr1 162491059 162491101 -34704331 + AT_rich Low_complexity Low_complexity 1 42 0 8 1824 2797 167 15 22 chr1 162491116 162491649 -34703783 - L1_Mur1 LINE L1 -335 5551 5023 8 1824 258 320 13 0 chr1 162491658 162491733 -34703699 - B3A SINE B2 -11 187 112 8 1824 221 289 0 0 chr1 162492977 162493022 -34702410 + ID4_ SINE ID 7 51 -32 8 1824 288 0 0 0 chr1 162493064 162493096 -34702336 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1824 856 305 54 25 chr1 162493102 162493344 -34702088 + B4A SINE B4 1 249 -43 8 1824 1431 169 19 0 chr1 162493653 162493920 -34701512 - Lx2B LINE L1 -15 6985 6714 8 1824 799 340 73 13 chr1 162494566 162495033 -34700399 + MER68 LTR ERVL 38 561 -2 8 1824 310 273 65 0 chr1 162495576 162495653 -34699779 - PB1D7 SINE Alu -1 119 38 8 1824 21 36 0 0 chr1 162495756 162495784 -34699648 + AT_rich Low_complexity Low_complexity 1 28 0 8 1824 311 60 0 20 chr1 162497142 162497193 -34698239 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 8 1824 381 234 219 17 chr1 162497874 162498052 -34697380 + B3 SINE B2 3 216 0 8 1824 573 185 121 15 chr1 162498253 162498451 -34696981 + Lx2 LINE L1 6776 6994 -3 8 1824 1272 192 216 9 chr1 162498479 162498826 -34696606 - MTD LTR MaLR 0 419 1 8 1824 192 152 0 0 chr1 162499063 162499096 -34696336 + GA-rich Low_complexity Low_complexity 2 34 0 8 1824 1521 252 205 21 chr1 162499360 162499398 -34696034 + Lx6 LINE L1 6702 6740 -720 8 1824 207 0 0 0 chr1 162499398 162499421 -34696011 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1824 513 0 0 0 chr1 162499421 162499477 -34695955 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1824 1521 252 205 21 chr1 162499477 162499997 -34695435 + Lx6 LINE L1 6741 7363 -97 8 1824 250 278 0 11 chr1 162500004 162500095 -34695337 + Lx6 LINE L1 7344 7433 -27 1 1824 253 381 0 0 chr1 162500487 162500592 -34694840 - Lx9 LINE L1 -343 7301 7197 2 1824 485 301 18 9 chr1 162501075 162501189 -34694243 + B1F SINE Alu 4 118 -31 3 1824 481 289 40 0 chr1 162501676 162501825 -34693607 - RSINE1 SINE B4 -9 156 2 4 1824 382 348 50 78 chr1 162502147 162502256 -34693176 - B3 SINE B2 -3 213 2 5 1824 485 255 18 28 chr1 162502256 162502365 -34693067 - ID_B1 SINE B4 -115 109 2 6 1824 484 236 39 0 chr1 162503644 162503759 -34691673 + Lx9 LINE L1 6946 7050 -594 7 1824 503 128 0 11 chr1 162503917 162504004 -34691428 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 8 1824 500 259 69 25 chr1 162504608 162504810 -34690622 - B3 SINE B2 -4 212 2 9 1824 21 0 0 0 chr1 162505087 162505108 -34690324 + AT_rich Low_complexity Low_complexity 1 21 0 1 1824 24 0 0 0 chr1 162508366 162508390 -34687042 + AT_rich Low_complexity Low_complexity 1 24 0 1 1824 285 98 0 0 chr1 162509836 162509877 -34685555 + (TCC)n Simple_repeat Simple_repeat 3 43 0 1 1824 702 128 71 16 chr1 162510874 162511001 -34684431 + L1Md_F2 LINE L1 6437 6570 -12 1 1824 399 218 110 24 chr1 162511021 162511148 -34684284 + RSINE1 SINE B4 11 148 -17 1 1824 228 211 0 30 chr1 162511170 162511283 -34684149 + CT-rich Low_complexity Low_complexity 1 109 0 1 1824 508 244 71 38 chr1 162511964 162512147 -34683285 + B3A SINE B2 2 190 -8 1 1824 26 64 0 0 chr1 162512204 162512251 -34683181 + AT_rich Low_complexity Low_complexity 1 47 0 1 1824 863 174 60 50 chr1 162512376 162512576 -34682856 + ORR1D1 LTR MaLR 170 371 -3 1 1824 5164 51 0 9 chr1 162512678 162513332 -34682100 + L1Md_F3 LINE L1 4938 5585 -298 1 1824 8399 32 1 4 chr1 162513333 162514334 -34681098 + L1Md_F3 LINE L1 5587 6584 0 1 1824 21 0 0 0 chr1 162515231 162515252 -34680180 + AT_rich Low_complexity Low_complexity 1 21 0 2 1824 440 288 88 61 chr1 162515577 162516095 -34679337 + L1M5 LINE L1 4333 4866 -1280 2 1824 363 279 154 56 chr1 162516161 162516427 -34679005 + L1M5 LINE L1 4961 5252 -894 2 1824 329 304 39 59 chr1 162516502 162516705 -34678727 + L1MA6 LINE L1 5972 6170 -130 2 1824 456 62 0 0 chr1 162516854 162516918 -34678514 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1824 253 284 103 95 chr1 162517008 162517378 -34678054 + L1M5 LINE L1 5387 5759 -405 2 1824 406 150 129 10 chr1 162519998 162520099 -34675333 - Lx8 LINE L1 0 7473 7361 2 1824 718 270 14 83 chr1 162520125 162520343 -34675089 - B3 SINE B2 -10 206 4 2 1824 780 274 107 55 chr1 162520408 162520810 -34674622 - Lx8 LINE L1 -189 7284 6862 2 1824 275 350 10 10 chr1 162522039 162522143 -34673289 - B1F SINE Alu -45 104 1 2 1824 306 0 0 0 chr1 162522311 162522345 -34673087 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1824 348 64 0 21 chr1 162523193 162523241 -34672191 - L1_Mus1 LINE L1 -183 6384 6338 2 1824 765 59 0 0 chr1 162523240 162523341 -34672091 + L1_Mus1 LINE L1 6391 6491 -76 2 1824 4137 57 4 4 chr1 162523738 162524268 -34671164 - L1_Mus1 LINE L1 0 6567 6038 2 1824 636 312 58 2 chr1 162525764 162526070 -34669362 + Lx8 LINE L1 6457 6928 -716 3 1824 198 118 0 0 chr1 162526191 162526225 -34669207 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1824 739 292 49 45 chr1 162527113 162527357 -34668075 + B4A SINE B4 44 288 -4 3 1824 22 35 0 0 chr1 162527490 162527519 -34667913 + AT_rich Low_complexity Low_complexity 1 29 0 3 1824 1632 187 100 6 chr1 162527579 162527929 -34667503 + ORR1C2 LTR MaLR 2 384 0 3 1824 217 90 72 29 chr1 162528012 162528081 -34667351 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1824 27 62 0 0 chr1 162529069 162529117 -34666315 + AT_rich Low_complexity Low_complexity 1 48 0 3 28 1493 224 76 0 chr1 162529156 162529473 -34665959 + RMER1C Other Other 993 1333 -9 3 1825 2411 176 46 117 chr1 162529800 162529971 -34665461 + Lx7 LINE L1 5274 5450 -430 3 1825 3718 106 0 0 chr1 162529971 162530498 -34664934 + L1_Mus2 LINE L1 6040 6566 0 3 1825 5458 199 67 49 chr1 162530498 162532028 -34663404 + Lx7 LINE L1 5451 6998 -698 3 1825 1306 183 100 17 chr1 162532026 162532326 -34663106 + Lx7 LINE L1 7372 7696 0 3 1825 334 365 95 0 chr1 162532601 162532738 -34662694 - MER45A DNA Tip100 -28 150 1 4 1825 320 332 84 21 chr1 162532770 162533016 -34662416 + L1MEf LINE L1 1423 1674 -4526 4 1825 1167 69 0 0 chr1 162533114 162533259 -34662173 + B1_Mm SINE Alu 2 146 -1 4 1825 194 81 0 26 chr1 162533259 162533297 -34662135 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 1825 583 48 12 12 chr1 162533297 162533381 -34662051 + (GAGAA)n Simple_repeat Simple_repeat 1 84 0 4 1825 1058 135 6 0 chr1 162533386 162533564 -34661868 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1825 344 308 0 11 chr1 162534954 162535046 -34660386 - PB1D10 SINE Alu -7 110 20 4 1825 1861 109 109 0 chr1 162535675 162535969 -34659463 + Lx3B LINE L1 6648 6973 0 4 1825 213 39 0 0 chr1 162536431 162536457 -34658975 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1825 6791 113 61 25 chr1 162537293 162538450 -34656982 + Lx3C LINE L1 5772 6970 -6 4 1825 443 165 29 0 chr1 162539078 162539181 -34656251 - Lx9 LINE L1 -7 7637 7532 5 1825 601 284 0 0 chr1 162539216 162539350 -34656082 - RSINE1 SINE B4 -29 136 3 5 1825 180 111 0 0 chr1 162539808 162539835 -34655597 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1825 220 220 20 20 chr1 162540727 162540778 -34654654 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1825 425 273 9 9 chr1 162541425 162541536 -34653896 + PB1D9 SINE Alu 10 120 0 5 1825 231 111 22 0 chr1 162542225 162542270 -34653162 - Lx8 LINE L1 -6 7467 7422 5 1825 749 220 175 0 chr1 162542617 162542817 -34652615 + Lx6 LINE L1 7186 7420 -40 5 1825 6417 61 2 8 chr1 162542878 162543719 -34651713 + L1Md_F2 LINE L1 5746 6581 -1 5 1825 524 325 30 0 chr1 162543904 162544104 -34651328 + B3 SINE B2 1 206 -10 5 1825 3060 110 21 37 chr1 162544167 162544650 -34650782 + MT2C_Mm LTR ERVL 1 475 0 5 1825 1176 74 0 0 chr1 162544779 162544927 -34650505 + B1_Mus1 SINE Alu 1 148 0 6 1825 189 107 0 0 chr1 162544929 162544957 -34650475 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1825 342 0 0 0 chr1 162545008 162545046 -34650386 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1825 330 45 0 0 chr1 162545046 162545089 -34650343 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1825 206 72 22 67 chr1 162545577 162545622 -34649810 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1825 245 347 30 10 chr1 162546337 162546436 -34648996 + B1F1 SINE Alu 1 101 -48 6 1825 227 330 22 11 chr1 162546517 162546609 -34648823 + GA-rich Low_complexity Low_complexity 3 95 0 6 1825 820 258 55 5 chr1 162546618 162546836 -34648596 + MTEb LTR MaLR 4 232 -147 6 1825 1172 61 0 0 chr1 162548158 162548305 -34647127 - B1_Mus1 SINE Alu 0 148 2 6 1825 1322 189 53 40 chr1 162548355 162548658 -34646774 + Lx9 LINE L1 6804 7110 -534 6 1825 2265 133 8 11 chr1 162548675 162549056 -34646376 + L1_Mur3 LINE L1 4940 5319 -561 7 1825 1392 216 34 31 chr1 162549088 162549408 -34646024 + Lx6 LINE L1 6748 7068 -392 7 1825 358 239 150 25 chr1 162549506 162549626 -34645806 - MIR SINE MIR -19 243 109 7 1825 232 277 101 58 chr1 162550463 162550601 -34644831 + LTR48 LTR ERV1 176 319 -468 7 1825 24 32 0 0 chr1 162551019 162551050 -34644382 + AT_rich Low_complexity Low_complexity 1 31 0 7 1825 25 31 0 0 chr1 162551108 162551140 -34644292 + AT_rich Low_complexity Low_complexity 1 32 0 7 1825 404 292 121 26 chr1 162551278 162551468 -34643964 + B3 SINE B2 9 216 0 7 1825 349 286 98 11 chr1 162551857 162552041 -34643391 + Charlie7 DNA MER1_type 1701 1900 -712 7 1825 550 382 5 5 chr1 162552047 162552247 -34643185 + B4A SINE B4 2 201 -91 7 1825 1608 218 110 6 chr1 162552249 162552605 -34642827 - MTB_Mm LTR MaLR -14 393 1 7 1825 867 179 27 25 chr1 162552614 162552806 -34642626 + B3 SINE B2 1 193 0 8 1825 304 297 10 29 chr1 162552885 162552989 -34642443 + GA-rich Low_complexity Low_complexity 3 104 0 8 1825 1164 45 0 43 chr1 162552989 162553175 -34642257 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 8 1825 29 60 0 0 chr1 162553281 162553331 -34642101 + AT_rich Low_complexity Low_complexity 1 50 0 8 1825 230 254 0 0 chr1 162554026 162554093 -34641339 + L1MB5 LINE L1 6087 6153 -21 8 1825 294 271 57 7 chr1 162554174 162554315 -34641117 + Charlie7a DNA MER1_type 90 237 -35 8 1825 3099 155 98 23 chr1 162554725 162555645 -34639787 + RLTR13D1 LTR ERVK 10 1023 0 8 1825 1004 123 0 20 chr1 162556026 162556175 -34639257 + B1_Mur3 SINE Alu 1 146 -3 8 1825 1361 157 24 0 chr1 162556489 162556738 -34638694 - ORR1B1 LTR MaLR -139 255 1 8 1825 1073 143 0 5 chr1 162557596 162557786 -34637646 + Lx LINE L1 6465 6653 -1 8 1825 21 36 0 0 chr1 162559352 162559380 -34636052 + AT_rich Low_complexity Low_complexity 1 28 0 9 1825 40 87 0 0 chr1 162559389 162559492 -34635940 + AT_rich Low_complexity Low_complexity 1 103 0 9 1825 1880 107 31 10 chr1 162560255 162560548 -34634884 + Lx3A LINE L1 6679 6977 -4 9 1825 3036 144 34 7 chr1 162560798 162561359 -34634073 - L1_Mur2 LINE L1 -1052 4825 4250 9 1825 2833 141 20 22 chr1 162561359 162561851 -34633581 + Lx LINE L1 6162 6652 -2 9 1825 22 0 0 0 chr1 162561999 162562021 -34633411 + AT_rich Low_complexity Low_complexity 1 22 0 9 1825 322 266 156 21 chr1 162563094 162563190 -34632242 - RSINE1 SINE B4 -46 119 11 9 1825 1453 33 33 0 chr1 162563385 162563565 -34631867 + B2_Mm2 SINE B2 4 189 -6 9 1825 641 92 0 10 chr1 162564340 162564439 -34630993 + (GGA)n Simple_repeat Simple_repeat 2 99 0 9 1825 1199 27 13 13 chr1 162565237 162565386 -34630046 - B1_Mur4 SINE Alu 0 150 2 9 1825 243 231 118 18 chr1 162566366 162566476 -34628956 - L1M3 LINE L1 -732 5436 5316 1 1825 306 353 73 10 chr1 162566465 162566974 -34628458 - L1M5 LINE L1 -1314 4832 4292 1 1825 837 169 7 14 chr1 162566988 162567132 -34628300 + B1_Mur2 SINE Alu 2 144 -5 1 1825 186 43 0 0 chr1 162567263 162567286 -34628146 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1825 1820 186 149 96 chr1 162567307 162567485 -34627947 + Lx6 LINE L1 6601 6759 -701 1 1825 387 60 0 0 chr1 162567485 162567535 -34627897 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 1 1825 1820 186 149 96 chr1 162567535 162567651 -34627781 + Lx6 LINE L1 6760 6888 -572 1 1825 654 13 0 0 chr1 162567651 162567726 -34627706 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 1 1825 1820 187 144 92 chr1 162567726 162568074 -34627358 + Lx6 LINE L1 6889 7537 -159 1 1825 36537 19 0 1 chr1 162568094 162573254 -34622178 - L1Md_A LINE L1 0 7224 2005 1 1825 321 26 0 0 chr1 162573255 162573293 -34622139 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1 1825 22 0 0 0 chr1 162573659 162573681 -34621751 + AT_rich Low_complexity Low_complexity 1 22 0 1 1825 356 239 16 107 chr1 162573767 162573889 -34621543 + MT2B LTR ERVL 154 264 -337 1 1825 870 159 7 0 chr1 162573785 162573923 -34621509 + B1_Mus2 SINE Alu 9 147 0 1 1825 562 307 67 14 chr1 162573962 162574437 -34620995 - L1MC LINE L1 -2131 4015 3510 1 1825 249 269 0 29 chr1 162574460 162574529 -34620903 + ID4_ SINE ID 2 68 -15 1 1825 360 257 97 0 chr1 162574733 162574846 -34620586 + ID_B1 SINE B4 99 222 -2 1 1825 384 340 0 33 chr1 162575104 162575256 -34620176 + RSINE1 SINE B4 19 165 0 1 1825 23 78 0 0 chr1 162575256 162575307 -34620125 + AT_rich Low_complexity Low_complexity 1 51 0 1 1825 760 209 193 82 chr1 162576058 162576486 -34618946 + RMER1B Other Other 19 527 -539 1 1825 815 270 27 24 chr1 162576521 162576813 -34618619 + Lx8 LINE L1 6877 7169 -304 1 1825 24 0 0 0 chr1 162577078 162577102 -34618330 + AT_rich Low_complexity Low_complexity 1 24 0 1 1825 2977 179 23 7 chr1 162577721 162578285 -34617147 + RMER1B Other Other 491 1063 -3 1 1825 22 0 0 0 chr1 162578337 162578359 -34617073 + AT_rich Low_complexity Low_complexity 1 22 0 1 1825 1090 260 83 38 chr1 162578536 162578935 -34616497 - MTD LTR MaLR -2 417 1 1 1825 239 245 19 0 chr1 162579042 162579095 -34616337 - MIR SINE MIR -118 144 91 1 1825 898 227 173 127 chr1 162579663 162579792 -34615640 - RLTR21 LTR ERVK 0 1404 1265 1 1825 297 0 0 0 chr1 162579792 162579825 -34615607 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1825 5078 188 59 94 chr1 162579825 162579915 -34615517 - RLTR21 LTR ERVK -140 1264 1095 1 1825 3792 169 98 55 chr1 162579915 162580782 -34614650 + RMER13B LTR ERVK 1 904 -4 1 1825 5078 182 42 89 chr1 162580782 162580796 -34614636 - RLTR21 LTR ERVK -478 1094 1094 1 1825 288 111 0 0 chr1 162580796 162580841 -34614591 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1825 5078 182 42 89 chr1 162580841 162581355 -34614077 - RLTR21 LTR ERVK -478 1094 576 1 1825 1077 117 0 27 chr1 162581355 162581540 -34613892 + L1Md_F2 LINE L1 6403 6582 0 1 1825 5078 182 42 89 chr1 162581540 162582149 -34613283 - RLTR21 LTR ERVK -997 575 1 1 1825 396 0 0 0 chr1 162582166 162582210 -34613222 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1825 462 36 0 0 chr1 162582210 162582265 -34613167 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1825 225 65 0 0 chr1 162582533 162582564 -34612868 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1825 2914 60 34 8 chr1 162583258 162583644 -34611788 + MTB LTR MaLR 1 396 -4 1 1825 349 223 8 43 chr1 162583700 162583817 -34611615 + RLTR19-int LTR ERVK 1046 1158 -4979 1 1825 1220 304 81 38 chr1 162583819 162584411 -34611021 + MTC-int LTR MaLR 459 1185 -73 1 1825 924 235 42 0 chr1 162584574 162584791 -34610641 + URR1A DNA MER1_type 1 226 0 1 1825 1087 172 27 27 chr1 162584881 162585144 -34610288 + RLTR19-int LTR ERVK 1870 2132 -3390 1 1825 615 277 31 13 chr1 162585125 162585352 -34610080 + RLTR19-int LTR ERVK 2330 2560 -3577 1 1825 1215 191 42 64 chr1 162585817 162586147 -34609285 + RLTR19-int LTR ERVK 3485 3807 -2330 1 1825 1010 129 26 6 chr1 162586148 162586304 -34609128 - B2_Mm2 SINE B2 -23 172 14 1 1825 318 138 86 0 chr1 162587021 162587079 -34608353 - B2_Mm2 SINE B2 -132 63 1 1 1825 1232 202 103 90 chr1 162587081 162587713 -34607719 + RLTR19-int LTR ERVK 3817 4380 -1757 1 1825 198 359 0 13 chr1 162588944 162589023 -34606409 - L3 LINE CR1 -3547 942 865 1 1825 237 169 33 33 chr1 162589246 162589307 -34606125 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 1 1825 301 299 38 17 chr1 162589370 162589465 -34605967 - B1F SINE Alu -1 116 22 1 1825 30 77 0 0 chr1 162589577 162589642 -34605790 + AT_rich Low_complexity Low_complexity 1 65 0 1 1825 21 0 0 0 chr1 162589701 162589722 -34605710 + AT_rich Low_complexity Low_complexity 1 21 0 1 1825 447 296 52 22 chr1 162589739 162589874 -34605558 - RSINE1 SINE B4 -24 141 3 1 1825 26 30 0 0 chr1 162590839 162590872 -34604560 + AT_rich Low_complexity Low_complexity 1 33 0 1 1825 3555 58 2 4 chr1 162590878 162591331 -34604101 - L1_Mus1 LINE L1 0 6567 6116 1 1825 2384 297 63 8 chr1 162591538 162592440 -34602992 + Lx8 LINE L1 6513 7464 -9 1 1825 200 205 0 0 chr1 162592625 162592664 -34602768 + GA-rich Low_complexity Low_complexity 2 40 0 1 1825 7433 30 1 3 chr1 162592967 162593842 -34601590 + L1Md_F2 LINE L1 5706 6578 -4 1 1825 385 319 108 48 chr1 162593928 162594318 -34601114 + L2b LINE L2 2753 3166 -209 1 1825 570 306 44 89 chr1 162594434 162594750 -34600682 - MER68 LTR ERVL -2 561 260 1 1825 453 286 53 67 chr1 162594779 162594929 -34600503 - B3A SINE B2 -15 183 36 1 1825 1511 48 0 21 chr1 162594929 162595122 -34600310 - L1_Mus1 LINE L1 0 6567 6379 1 1825 23 54 0 0 chr1 162595133 162595170 -34600262 + AT_rich Low_complexity Low_complexity 1 37 0 1 1825 735 241 96 15 chr1 162595288 162595549 -34599883 - Lx7 LINE L1 -284 7412 7131 1 1825 225 100 100 0 chr1 162595566 162595606 -34599826 - B3 SINE B2 -170 46 3 1 1825 877 326 27 0 chr1 162595611 162595869 -34599563 - MER68 LTR ERVL -290 273 9 1 1825 362 300 50 8 chr1 162595970 162596091 -34599341 - L2c LINE L2 -4 3383 3258 1 1825 23 0 0 0 chr1 162596577 162596600 -34598832 + GC_rich Low_complexity Low_complexity 1 23 0 1 1825 448 183 82 35 chr1 162597817 162597987 -34597445 + Lx9 LINE L1 7465 7642 -2 1 1825 640 173 0 0 chr1 162598466 162598570 -34596862 + B3 SINE B2 1 104 -112 1 1825 387 0 0 0 chr1 162598985 162599028 -34596404 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1 1825 23 0 0 0 chr1 162599202 162599225 -34596207 + AT_rich Low_complexity Low_complexity 1 23 0 1 1825 468 293 98 18 chr1 162599261 162599536 -34595896 - Lx9 LINE L1 -74 7570 7274 1 1825 223 357 90 28 chr1 162600028 162600172 -34595260 + RSINE1 SINE B4 4 156 -9 1 1825 210 71 0 0 chr1 162600213 162600241 -34595191 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1825 805 218 76 50 chr1 162600380 162600578 -34594854 + B3 SINE B2 3 205 -11 1 1825 22 35 0 0 chr1 162600578 162600607 -34594825 + AT_rich Low_complexity Low_complexity 1 29 0 1 1825 226 135 38 19 chr1 162600707 162600760 -34594672 + G-rich Low_complexity Low_complexity 1 54 0 1 1825 2706 25 9 3 chr1 162600762 162601082 -34594350 + RLTRETN_Mm LTR ERVK 1 322 0 1 1825 845 235 19 0 chr1 162601187 162601349 -34594083 - B3A SINE B2 -31 167 3 1 1825 4526 159 57 65 chr1 162603185 162604094 -34591338 + RMER19B LTR ERVK 1 902 0 1 1825 291 307 11 11 chr1 162604240 162604329 -34591103 + B1F1 SINE Alu 10 98 -51 1 1825 492 285 34 62 chr1 162604431 162604577 -34590855 - RSINE1 SINE B4 -12 153 12 1 1825 22 56 0 0 chr1 162605287 162605323 -34590109 + AT_rich Low_complexity Low_complexity 1 36 0 1 1825 202 321 0 45 chr1 162605498 162605586 -34589846 - L2a LINE L2 -263 3163 3080 1 1825 334 298 52 77 chr1 162606050 162606283 -34589149 + L1MA8 LINE L1 5781 6007 -293 1 1825 30 27 0 0 chr1 162606350 162606387 -34589045 + AT_rich Low_complexity Low_complexity 1 37 0 1 1825 250 208 38 25 chr1 162606552 162606631 -34588801 + (CAGAGA)n Simple_repeat Simple_repeat 4 83 0 1 1825 619 195 22 59 chr1 162606806 162606942 -34588490 - B1_Mur1 SINE Alu -17 132 2 1 1825 5188 137 95 21 chr1 162608478 162609539 -34585893 + Lx3C LINE L1 5835 6974 -2 1 1825 36 53 0 0 chr1 162609541 162609598 -34585834 + AT_rich Low_complexity Low_complexity 1 57 0 1 1825 1135 260 124 22 chr1 162609657 162610472 -34584960 + L1M2 LINE L1 3423 4320 -1823 1 1825 467 296 46 64 chr1 162610578 162610924 -34584508 + L1MB5 LINE L1 5675 6014 -160 1 1825 181 324 29 0 chr1 162611087 162611155 -34584277 + MIR SINE MIR 48 117 -145 1 1825 596 254 96 0 chr1 162611369 162611546 -34583886 + B3A SINE B2 5 198 0 1 1825 7828 65 7 1 chr1 162612454 162613737 -34581695 - L1_Mus1 LINE L1 0 6567 5278 1 1825 555 274 66 31 chr1 162614013 162614193 -34581239 + ID_B1 SINE B4 50 223 -69 1 1825 1306 295 99 28 chr1 162614296 162614864 -34580568 + Lx8 LINE L1 6657 7264 -209 1 1825 227 182 0 0 chr1 162614962 162615006 -34580426 + Lx8 LINE L1 7419 7462 -11 1 1825 207 151 40 27 chr1 162615158 162615233 -34580199 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 1 1825 317 207 11 0 chr1 162615261 162615348 -34580084 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1825 663 322 38 53 chr1 162615348 162615742 -34579690 + L1MD LINE L1 3770 4157 -1989 1 1825 3318 134 151 105 chr1 162615939 162616818 -34578614 - RLTR25B LTR ERVK 0 1028 2 1 1825 2695 243 93 42 chr1 162617298 162618223 -34577209 + RCHARR1 DNA MER1_type 3 974 0 1 1825 929 268 82 4 chr1 162618912 162619156 -34576276 - MTEb LTR MaLR 0 379 117 1 1825 492 167 0 23 chr1 162619728 162619814 -34575618 + ORR1B1-int LTR MaLR 1 84 -1879 1 1825 6387 186 85 18 chr1 162619804 162620147 -34575285 + ORR1B1-int LTR MaLR 14 384 -1125 1 1825 1936 51 12 8 chr1 162620147 162620403 -34575029 - L1Md_F2 LINE L1 -4 6578 6322 1 1825 6387 186 85 18 chr1 162620403 162621461 -34573971 + ORR1B1-int LTR MaLR 385 1509 0 1 1825 2036 163 19 100 chr1 162621461 162621798 -34573634 + ORR1B1 LTR MaLR 1 333 -61 1 1825 2407 48 0 0 chr1 162621798 162622091 -34573341 + L1Md_T LINE L1 6279 6571 -11 1 1825 2036 163 19 100 chr1 162622091 162622182 -34573250 + ORR1B1 LTR MaLR 334 394 0 1 1825 820 287 50 0 chr1 162622996 162623198 -34572234 - ID_B1 SINE B4 -3 221 10 1 1825 359 339 25 0 chr1 162623861 162623982 -34571450 - Lx8 LINE L1 -144 7329 7206 1 1825 24 0 0 0 chr1 162623989 162624013 -34571419 + AT_rich Low_complexity Low_complexity 1 24 0 2 1825 257 322 10 62 chr1 162624100 162624196 -34571236 + PB1D10 SINE Alu 19 109 -8 2 1825 783 163 0 8 chr1 162624264 162624394 -34571038 + B3 SINE B2 2 130 -86 2 1825 256 83 0 40 chr1 162624431 162624481 -34570951 + (TTAA)n Simple_repeat Simple_repeat 1 48 0 2 1825 196 267 112 34 chr1 162624825 162624914 -34570518 - MIR3 SINE MIR -17 191 96 2 1825 671 246 7 14 chr1 162625242 162625386 -34570046 + B1F SINE Alu 1 143 -6 2 1825 601 318 16 64 chr1 162625860 162626048 -34569384 + ID_B1 SINE B4 30 208 -16 2 1825 186 43 0 0 chr1 162626053 162626076 -34569356 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 2 1825 480 287 68 39 chr1 162626154 162626433 -34568999 + B4A SINE B4 1 287 -5 2 1825 207 219 0 0 chr1 162626573 162626614 -34568818 + A-rich Low_complexity Low_complexity 1 41 0 2 1825 427 221 0 0 chr1 162627096 162627173 -34568259 + Lx7 LINE L1 7033 7109 -587 2 1825 275 254 34 0 chr1 162627198 162627257 -34568175 + PB1 SINE Alu 5 65 -62 2 1825 347 262 0 12 chr1 162627261 162627284 -34568148 + ID SINE ID 59 80 -144 2 1825 421 196 21 11 chr1 162627284 162627377 -34568055 + B1_Mur4 SINE Alu 1 94 -56 2 1825 1145 248 171 67 chr1 162627384 162627447 -34567985 + Lx7 LINE L1 7142 7204 -492 2 1825 648 0 0 0 chr1 162627447 162627519 -34567913 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 2 1825 1145 248 171 67 chr1 162627519 162627930 -34567502 + Lx7 LINE L1 7205 7664 -32 2 1825 11475 39 1 0 chr1 162628291 162630400 -34565032 - L1Md_F2 LINE L1 0 6582 4474 2 1825 608 271 86 25 chr1 162630595 162630792 -34564640 + ID_B1 SINE B4 2 210 -14 2 1825 248 339 8 71 chr1 162631670 162631797 -34563635 - Charlie21a DNA MER1_type -776 437 319 2 1825 1186 61 0 0 chr1 162631799 162631946 -34563486 + B1_Mus2 SINE Alu 1 147 0 2 1825 1196 62 0 0 chr1 162632883 162633029 -34562403 + B1_Mm SINE Alu 2 147 0 2 1825 237 65 0 0 chr1 162633035 162633066 -34562366 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1825 243 315 0 32 chr1 162633384 162633479 -34561953 + CT-rich Low_complexity Low_complexity 3 94 0 2 1825 690 216 0 0 chr1 162634025 162634201 -34561231 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1825 273 256 0 0 chr1 162634227 162634309 -34561123 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1825 2434 118 5 13 chr1 162634392 162634769 -34560663 + Lx3B LINE L1 6596 6969 -4 2 1825 22 0 0 0 chr1 162634782 162634804 -34560628 + AT_rich Low_complexity Low_complexity 1 22 0 2 1825 336 308 25 8 chr1 162634853 162634974 -34560458 - Lx9 LINE L1 -877 6767 6645 2 1825 1541 298 81 37 chr1 162634973 162635726 -34559706 + Lx8 LINE L1 6643 7571 -73 2 1825 208 397 82 16 chr1 162635943 162636125 -34559307 + L3 LINE CR1 4218 4411 -78 2 1825 8134 141 34 100 chr1 162636758 162638438 -34556994 - Lx LINE L1 -79 5804 4236 2 1825 6026 101 3 16 chr1 162638438 162639303 -34556129 + Lx LINE L1 5800 6653 -1 2 1825 26 0 0 0 chr1 162639497 162639523 -34555909 + AT_rich Low_complexity Low_complexity 1 26 0 2 1825 710 188 27 27 chr1 162639718 162639866 -34555566 - B1_Mus1 SINE Alu 0 148 1 2 1825 22 0 0 0 chr1 162640214 162640236 -34555196 + AT_rich Low_complexity Low_complexity 1 22 0 2 1825 29 60 0 0 chr1 162640713 162640763 -34554669 + AT_rich Low_complexity Low_complexity 1 50 0 2 1825 4062 42 4 2 chr1 162641880 162642378 -34553054 + L1_Mus2 LINE L1 6068 6566 0 2 1825 267 312 53 35 chr1 162642730 162642843 -34552589 + MIR3 SINE MIR 68 182 -26 2 1825 541 287 60 24 chr1 162643179 162643347 -34552085 - B3A SINE B2 -21 177 4 2 1825 276 200 18 0 chr1 162643372 162643427 -34552005 - ID_B1 SINE B4 -3 221 166 2 1825 649 88 11 0 chr1 162643427 162643518 -34551914 - L1_Mur1 LINE L1 -1324 4562 4471 2 1825 606 286 52 39 chr1 162643624 162643839 -34551593 + B3A SINE B2 3 216 0 2 1825 551 291 114 6 chr1 162644389 162644565 -34550867 + B3A SINE B2 3 197 -1 2 1825 28 29 0 0 chr1 162644565 162644600 -34550832 + AT_rich Low_complexity Low_complexity 1 35 0 2 1825 339 391 128 59 chr1 162644620 162644941 -34550491 - LTR41B LTR ERVL -133 625 283 2 1825 567 269 143 9 chr1 162644953 162645163 -34550269 - LTR41B LTR ERVL -520 238 1 2 1825 189 0 0 0 chr1 162645254 162645275 -34550157 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1825 425 283 33 7 chr1 162645289 162645442 -34549990 + L1MD2 LINE L1 6184 6340 -19 2 1825 548 279 15 0 chr1 162645465 162645601 -34549831 + B1_Mur1 SINE Alu 3 140 -9 2 1825 355 267 128 51 chr1 162645719 162645786 -34549646 + L1_Mur3 LINE L1 2254 2313 -3830 2 1825 369 0 0 0 chr1 162645786 162645827 -34549605 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1825 355 267 128 51 chr1 162645827 162646150 -34549282 + L1_Mur3 LINE L1 2314 2674 -3469 2 1825 254 292 20 101 chr1 162646153 162646252 -34549180 + MT2B2 LTR ERVL 178 268 -316 2 1825 515 256 0 33 chr1 162646168 162646289 -34549143 + B1F1 SINE Alu 32 148 -1 2 1825 26 50 0 0 chr1 162646377 162646417 -34549015 + AT_rich Low_complexity Low_complexity 1 40 0 2 1825 704 237 26 0 chr1 162646494 162646650 -34548782 - ORR1D2-int LTR MaLR -1207 163 4 2 1825 1273 243 78 12 chr1 162646654 162647000 -34548432 - ORR1D2 LTR MaLR -1 369 1 2 1825 22 0 0 0 chr1 162647129 162647151 -34548281 + AT_rich Low_complexity Low_complexity 1 22 0 2 1825 551 15 0 14 chr1 162648301 162648370 -34547062 + (GAGAA)n Simple_repeat Simple_repeat 3 70 0 2 1825 1016 282 94 31 chr1 162648475 162649219 -34546213 + L1_Mur3 LINE L1 4951 5798 -502 2 1825 793 257 19 9 chr1 162649490 162649702 -34545730 + B3 SINE B2 2 215 -1 2 1825 870 202 80 15 chr1 162649719 162649920 -34545512 + B3 SINE B2 1 214 -2 2 1825 470 318 15 8 chr1 162649927 162650057 -34545375 + ID_B1 SINE B4 84 214 -10 2 1825 680 71 10 0 chr1 162650057 162650156 -34545276 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2 1825 541 287 147 14 chr1 162650283 162650636 -34544796 + Kanga2_a DNA Tc2 409 808 -80 2 1825 228 154 0 0 chr1 162650736 162650788 -34544644 + T-rich Low_complexity Low_complexity 1 52 0 2 1825 832 240 25 35 chr1 162650832 162651035 -34544397 + B3 SINE B2 6 206 -10 2 1825 354 23 0 0 chr1 162651065 162651108 -34544324 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1825 881 271 45 115 chr1 162651116 162651220 -34544212 + B4 SINE B4 2 98 -194 2 1825 3253 127 97 0 chr1 162651220 162651748 -34543684 + Lx2B LINE L1 6414 6992 -8 2 1825 881 271 45 115 chr1 162651748 162651956 -34543476 + B4 SINE B4 99 292 0 2 1825 202 274 0 0 chr1 162651956 162652007 -34543425 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1825 616 140 136 23 chr1 162652510 162652642 -34542790 - B1_Mur4 SINE Alu -1 149 3 2 1825 1476 68 5 0 chr1 162652655 162652846 -34542586 - B2_Mm1a SINE B2 0 193 2 2 1825 23 68 0 0 chr1 162653008 162653052 -34542380 + AT_rich Low_complexity Low_complexity 1 44 0 2 1825 566 207 0 59 chr1 162653462 162653580 -34541852 + PB1D9 SINE Alu 3 113 -7 2 1825 412 173 148 37 chr1 162653760 162653868 -34541564 + B3A SINE B2 1 120 -78 2 1825 1227 48 0 0 chr1 162655001 162655148 -34540284 + B1_Mus2 SINE Alu 1 147 0 2 1825 250 116 0 23 chr1 162655769 162655813 -34539619 - Lx3B LINE L1 -4 6969 6927 2 1825 574 275 94 0 chr1 162655871 162656031 -34539401 + B3A SINE B2 17 191 -7 2 1825 253 295 130 28 chr1 162656042 162656150 -34539282 + PB1D7 SINE Alu 1 119 -1 2 1825 249 327 88 50 chr1 162657158 162657419 -34538013 + Tigger8 DNA MER2_type 71 341 -325 2 1825 1067 169 85 0 chr1 162658244 162658433 -34536999 + B3 SINE B2 1 205 -11 2 1825 253 197 12 134 chr1 162658493 162658510 -34536922 + MT2B LTR ERVL 150 156 -445 2 1825 511 207 150 18 chr1 162658510 162658623 -34536809 + B1_Mur3 SINE Alu 1 128 -21 2 1825 646 193 21 0 chr1 162658736 162658865 -34536567 + B1_Mur3 SINE Alu 2 138 -11 2 1825 558 0 0 0 chr1 162658865 162658927 -34536505 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 2 1825 737 37 9 27 chr1 162658927 162659039 -34536393 + (GGGGA)n Simple_repeat Simple_repeat 4 113 0 2 1825 340 301 26 53 chr1 162659039 162659050 -34536382 + ID_B1 SINE B4 214 223 -1 2 1825 212 189 0 0 chr1 162659052 162659089 -34536343 + A-rich Low_complexity Low_complexity 1 37 0 2 1825 216 188 20 40 chr1 162659102 162659152 -34536280 + PB1D7 SINE Alu 5 53 -67 2 1825 188 224 15 0 chr1 162659164 162659231 -34536201 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1825 3709 122 45 132 chr1 162659252 162660080 -34535352 + RMER6A LTR ERVK 1 756 0 2 1826 29 0 0 0 chr1 162660877 162660906 -34534526 + AT_rich Low_complexity Low_complexity 1 29 0 2 1826 411 21 0 0 chr1 162660984 162661032 -34534400 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1826 416 314 40 0 chr1 162661046 162661170 -34534262 - MER94 DNA AcHobo 0 134 6 2 1826 1356 79 0 31 chr1 162661407 162661603 -34533829 + B2_Mm2 SINE B2 2 191 -4 2 1826 469 13 64 0 chr1 162662581 162662659 -34532773 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1826 665 162 0 9 chr1 162662659 162662765 -34532667 - B1_Mus1 SINE Alu -9 139 35 2 1826 1123 82 0 0 chr1 162663016 162663163 -34532269 + B1_Mus2 SINE Alu 1 147 0 2 1826 197 65 0 31 chr1 162663982 162664014 -34531418 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1826 507 194 0 0 chr1 162664200 162664308 -34531124 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 1826 426 255 19 10 chr1 162664353 162664456 -34530976 - B1_Mus2 SINE Alu -1 146 43 2 1826 231 310 73 52 chr1 162664456 162664489 -34530943 - ID_B1 SINE B4 -2 222 84 2 1826 180 0 0 0 chr1 162664498 162664518 -34530914 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1826 232 323 77 0 chr1 162664712 162664777 -34530655 - B4 SINE B4 -8 284 215 2 1826 345 131 149 21 chr1 162664946 162665040 -34530392 - B4 SINE B4 -62 230 125 2 1826 608 263 54 77 chr1 162665048 162665270 -34530162 + B4 SINE B4 3 219 -73 2 1826 24 0 0 0 chr1 162665270 162665294 -34530138 + AT_rich Low_complexity Low_complexity 1 24 0 3 1826 36 82 0 0 chr1 162666150 162666235 -34529197 + AT_rich Low_complexity Low_complexity 1 85 0 3 1826 213 159 23 0 chr1 162666438 162666482 -34528950 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1826 22 0 0 0 chr1 162666645 162666667 -34528765 + AT_rich Low_complexity Low_complexity 1 22 0 3 1826 252 299 10 20 chr1 162666924 162667023 -34528409 + L1MEf LINE L1 1155 1252 -4948 3 1826 379 285 7 49 chr1 162667029 162667173 -34528259 + ID_B1 SINE B4 78 215 -9 3 1826 674 256 14 58 chr1 162667314 162667521 -34527911 + B3A SINE B2 1 198 0 3 1826 230 288 143 30 chr1 162667585 162667770 -34527662 + L1MEf LINE L1 1459 1654 -4546 3 1826 984 122 14 0 chr1 162667770 162667917 -34527515 + B1_Mur4 SINE Alu 2 150 0 3 1826 230 288 143 30 chr1 162667917 162668032 -34527400 + L1MEf LINE L1 1655 1792 -4408 3 1826 57 54 0 0 chr1 162668063 162668155 -34527277 + AT_rich Low_complexity Low_complexity 1 92 0 3 1826 223 208 0 20 chr1 162668614 162668663 -34526769 - PB1D10 SINE Alu -37 80 33 3 1826 314 304 81 74 chr1 162668717 162668866 -34526566 + B3A SINE B2 2 151 -47 3 1826 1266 67 27 32 chr1 162669318 162669503 -34525929 + B2_Mm2 SINE B2 3 186 -9 3 1826 420 315 18 41 chr1 162669681 162669850 -34525582 + RSINE1 SINE B4 1 165 0 3 1826 363 194 9 19 chr1 162671434 162671539 -34523893 + GA-rich Low_complexity Low_complexity 6 109 0 3 1826 252 330 11 0 chr1 162672082 162672170 -34523262 + GA-rich Low_complexity Low_complexity 2 90 0 3 1826 450 19 0 0 chr1 162672272 162672324 -34523108 - Lx3_Mus LINE L1 -1210 5799 5748 3 1826 6281 82 102 28 chr1 162672322 162673293 -34522139 + Lx3_Mus LINE L1 5797 6839 -170 3 1826 382 79 0 0 chr1 162673293 162673356 -34522076 + Lx3_Mus LINE L1 6947 7009 0 3 1826 839 37 9 0 chr1 162673648 162673755 -34521677 + (GAAAA)n Simple_repeat Simple_repeat 3 110 0 3 1826 319 335 54 29 chr1 162674165 162674442 -34520990 + L2 LINE L2 2321 2604 -815 3 1826 242 301 95 34 chr1 162674675 162674850 -34520582 - L2c LINE L2 0 3426 3228 3 1826 26 0 0 49 chr1 162674877 162674891 -34520541 + AT_rich Low_complexity Low_complexity 1 14 0 3 1826 1387 60 11 26 chr1 162674891 162675081 -34520351 - B2_Mm2 SINE B2 -8 187 1 3 1826 26 0 0 49 chr1 162675081 162675107 -34520325 + AT_rich Low_complexity Low_complexity 1 25 0 3 1826 1002 243 128 17 chr1 162675227 162675571 -34519861 + Tigger2b DNA MER2_type 140 521 -205 3 1826 189 0 0 0 chr1 162675740 162675761 -34519671 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1826 294 95 0 0 chr1 162675933 162675975 -34519457 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1826 1207 61 0 0 chr1 162675975 162676123 -34519309 - B1_Mus1 SINE Alu 0 148 1 3 1826 22 70 0 0 chr1 162676156 162676199 -34519233 + AT_rich Low_complexity Low_complexity 1 43 0 3 1826 247 280 0 48 chr1 162676373 162676497 -34518935 + T-rich Low_complexity Low_complexity 2 119 0 3 1826 997 91 60 12 chr1 162676501 162676668 -34518764 - L1Md_F2 LINE L1 0 6582 6408 3 1826 714 308 73 46 chr1 162676717 162676976 -34518456 + MTD LTR MaLR 5 270 -149 3 1826 1455 146 86 60 chr1 162677049 162677363 -34518069 + RLTRETN_Mm LTR ERVK 1 322 0 3 1826 1206 61 16 16 chr1 162677416 162677600 -34517832 + L1_Mus3 LINE L1 6453 6636 -2 3 1826 324 0 0 0 chr1 162677697 162677733 -34517699 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1826 308 154 31 0 chr1 162677739 162677804 -34517628 + GA-rich Low_complexity Low_complexity 4 70 0 3 1826 1499 42 21 5 chr1 162678018 162678207 -34517225 + B2_Mm2 SINE B2 2 193 -2 3 1826 454 301 37 15 chr1 162678403 162678538 -34516894 + B4A SINE B4 1 138 -154 3 1826 633 137 74 0 chr1 162678738 162678833 -34516599 + B1_Mus1 SINE Alu 1 102 -46 3 1826 6885 36 2 2 chr1 162679162 162679999 -34515433 + L1Md_F3 LINE L1 5748 6584 0 3 1826 357 43 0 0 chr1 162680119 162680166 -34515266 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1826 24 67 0 0 chr1 162680816 162680861 -34514571 + AT_rich Low_complexity Low_complexity 1 45 0 3 1826 2551 262 98 16 chr1 162680929 162681560 -34513872 + RMER1A Other Other 2 572 -458 3 1826 225 0 0 0 chr1 162681560 162681585 -34513847 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1826 2551 275 162 28 chr1 162681585 162681953 -34513479 + RMER1A Other Other 573 1010 -20 3 1826 645 61 20 10 chr1 162681953 162682053 -34513379 + (TAGA)n Simple_repeat Simple_repeat 3 103 0 3 1826 659 289 124 19 chr1 162682058 162682316 -34513116 + B4 SINE B4 2 286 -6 3 1826 441 306 101 68 chr1 162682433 162682798 -34512634 + L2a LINE L2 2919 3295 -131 3 1826 318 256 42 95 chr1 162682827 162682922 -34512510 + ORR1D1 LTR MaLR 3 92 -287 3 1826 367 303 138 84 chr1 162682961 162683257 -34512175 + ORR1D1 LTR MaLR 63 374 0 3 1826 398 108 15 0 chr1 162683333 162683398 -34512034 + (CATA)n Simple_repeat Simple_repeat 3 68 0 3 1826 306 204 178 30 chr1 162683724 162683825 -34511607 + L1MC5 LINE L1 7644 7759 -202 3 1826 802 223 63 39 chr1 162684038 162684243 -34511189 + B3 SINE B2 1 210 -6 3 1826 210 290 14 0 chr1 162684513 162684582 -34510850 + B4 SINE B4 15 84 -208 3 1826 438 324 91 82 chr1 162684659 162684996 -34510436 + MLT1A0 LTR MaLR 27 365 0 3 1826 349 291 65 37 chr1 162685117 162685224 -34510208 + PB1D10 SINE Alu 1 110 -7 3 1826 211 220 0 0 chr1 162685850 162685900 -34509532 + A-rich Low_complexity Low_complexity 1 50 0 3 1826 1705 151 28 111 chr1 162685942 162686301 -34509131 + ORR1A4 LTR MaLR 1 329 0 3 1826 263 306 109 18 chr1 162686874 162686984 -34508448 + Lx8 LINE L1 7119 7238 -235 3 1826 350 96 69 46 chr1 162687000 162687174 -34508258 + (CTTG)n Simple_repeat Simple_repeat 2 179 0 3 1826 405 289 112 47 chr1 162687193 162687407 -34508025 + Lx8 LINE L1 7241 7468 -5 3 1826 1156 65 0 19 chr1 162687486 162687643 -34507789 + B2_Mm2 SINE B2 1 154 -41 3 1826 245 250 77 33 chr1 162688555 162688646 -34506786 + RSINE1 SINE B4 71 165 0 3 1826 213 39 0 0 chr1 162688822 162688848 -34506584 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1826 390 42 0 0 chr1 162688877 162688925 -34506507 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1826 1592 204 24 57 chr1 162688948 162689318 -34506114 - ORR1D1 LTR MaLR 0 374 17 3 1826 4225 206 53 7 chr1 162689318 162690144 -34505288 - RMER1C Other Other 0 1342 479 3 1826 341 197 73 25 chr1 162690207 162690310 -34505122 + B1_Mur2 SINE Alu 2 140 -9 3 1826 576 0 0 0 chr1 162690310 162690374 -34505058 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3 1826 326 308 67 40 chr1 162690628 162690777 -34504655 - MIRb SINE MIR -92 176 24 3 1826 297 109 0 0 chr1 162691068 162691114 -34504318 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1826 1775 197 40 8 chr1 162691226 162691579 -34503853 - RMER5 LTR ERV1 0 534 171 3 1826 1132 165 88 8 chr1 162691582 162691821 -34503611 - RMER5 LTR ERV1 -183 351 94 3 1826 332 190 52 0 chr1 162692390 162692448 -34502984 + B1_Mur3 SINE Alu 68 128 -21 3 1826 495 0 0 0 chr1 162692451 162692506 -34502926 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 3 1826 417 318 22 29 chr1 162692715 162692851 -34502581 + ID_B1 SINE B4 87 221 -3 3 1826 279 291 12 25 chr1 162693155 162693236 -34502196 + ID4 SINE ID 3 82 -1 3 1826 21 82 0 0 chr1 162693236 162693285 -34502147 + AT_rich Low_complexity Low_complexity 1 49 0 3 1826 2280 109 81 20 chr1 162694649 162695042 -34500390 + Lx2A LINE L1 6591 7007 -1 3 1826 275 318 63 122 chr1 162696141 162696386 -34499046 + MLT1A1 LTR MaLR 21 249 -125 3 1826 2223 172 67 25 chr1 162696622 162697114 -34498318 - RMER19C LTR ERVK 0 611 1 3 1826 21 36 0 0 chr1 162697197 162697225 -34498207 + AT_rich Low_complexity Low_complexity 1 28 0 3 1826 829 246 16 43 chr1 162697231 162697418 -34498014 - B3 SINE B2 0 216 35 3 1826 1970 128 100 42 chr1 162697586 162698035 -34497397 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1826 283 319 32 21 chr1 162698051 162698144 -34497288 - PB1D10 SINE Alu -23 94 1 3 1826 232 254 18 0 chr1 162698567 162698622 -34496810 + MTEb LTR MaLR 1 56 -323 3 1826 254 192 12 110 chr1 162698751 162698833 -34496599 - B3A SINE B2 -4 194 121 3 1826 1703 200 51 17 chr1 162698839 162699233 -34496199 + Lx9 LINE L1 5483 5924 -1720 3 1826 1077 253 109 20 chr1 162699300 162699647 -34495785 + MTEa LTR MaLR 1 378 -1 3 1826 329 244 11 34 chr1 162699837 162699926 -34495506 + MLT1F1 LTR MaLR 4 90 -479 3 1826 468 0 0 0 chr1 162699926 162699978 -34495454 + (TTGG)n Simple_repeat Simple_repeat 2 53 0 3 1826 405 215 13 0 chr1 162699978 162700057 -34495375 - PB1D9 SINE Alu -11 109 30 3 1826 459 228 0 0 chr1 162700091 162700170 -34495262 + ID4 SINE ID 3 81 -2 3 1826 696 246 0 0 chr1 162700440 162700578 -34494854 - B1_Mur1 SINE Alu -7 142 5 3 1826 227 171 24 0 chr1 162700656 162700697 -34494735 + B1_Mur2 SINE Alu 103 144 -5 3 1826 10818 137 67 27 chr1 162701818 162702413 -34493019 + Lx6 LINE L1 3739 4354 -1526 3 1826 961 60 22 8 chr1 162702413 162702547 -34492885 + B1_Mus1 SINE Alu 3 138 -10 3 1826 456 19 0 0 chr1 162702547 162702600 -34492832 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 1826 10818 156 69 22 chr1 162702600 162704871 -34490561 + Lx6 LINE L1 4355 6751 -709 3 1826 331 202 291 39 chr1 162704895 162704998 -34490434 + B1_Mm SINE Alu 3 131 -16 3 1826 14167 80 21 4 chr1 162704998 162707848 -34487584 + L1VL2 LINE L1 91 2989 -626 3 1826 462 83 0 0 chr1 162707950 162708022 -34487410 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 3 1826 267 189 0 0 chr1 162708069 162708122 -34487310 + GA-rich Low_complexity Low_complexity 3 55 0 3 1826 831 247 0 0 chr1 162708203 162708365 -34487067 + RSINE1 SINE B4 2 163 -2 3 1826 576 193 92 8 chr1 162708402 162708522 -34486910 + B3 SINE B2 1 130 -86 3 1826 829 292 5 0 chr1 162709603 162709812 -34485620 - B3 SINE B2 -6 210 1 3 1826 730 245 150 26 chr1 162709934 162710461 -34484971 + L1M3 LINE L1 4984 5584 -728 4 1826 1543 142 172 10 chr1 162710470 162710861 -34484571 + Lx4B LINE L1 6601 7054 -4 4 1826 345 366 17 6 chr1 162710935 162711108 -34484324 + Lx8 LINE L1 7051 7225 -248 4 1826 22 0 0 0 chr1 162711249 162711271 -34484161 + AT_rich Low_complexity Low_complexity 1 22 0 4 1826 1306 95 0 16 chr1 162712139 162712331 -34483101 + B2_Mm2 SINE B2 4 192 -3 4 1826 1281 101 17 0 chr1 162712373 162712551 -34482881 + B2_Mm2 SINE B2 1 181 -14 4 1826 1169 36 0 0 chr1 162712679 162712817 -34482615 - B1_Mus2 SINE Alu -7 140 3 4 1826 926 205 81 0 chr1 162712835 162713020 -34482412 + B3 SINE B2 11 210 -6 4 1826 476 293 89 0 chr1 162713150 162713273 -34482159 - B1_Mus2 SINE Alu -1 146 13 4 1826 1923 251 40 8 chr1 162713720 162714084 -34481348 + Lx6 LINE L1 6945 7314 -146 4 1826 324 0 0 0 chr1 162714084 162714120 -34481312 + (TGG)n Simple_repeat Simple_repeat 2 37 0 4 1826 1923 251 40 8 chr1 162714120 162714230 -34481202 + Lx6 LINE L1 7315 7433 -27 4 1826 919 196 269 9 chr1 162714248 162714545 -34480887 - MTD LTR MaLR -43 336 1 4 1826 189 333 21 11 chr1 162714545 162714639 -34480793 - MIRb SINE MIR -37 231 137 4 1826 230 195 0 0 chr1 162714646 162714687 -34480745 + U2 snRNA snRNA 1 41 -147 4 1826 327 294 19 10 chr1 162715078 162715181 -34480251 + PB1D10 SINE Alu 1 104 -13 4 1826 506 308 112 30 chr1 162716426 162716694 -34478738 + B4A SINE B4 3 292 0 4 1826 210 191 0 0 chr1 162716709 162716751 -34478681 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1826 322 311 141 42 chr1 162718025 162718216 -34477216 - MER63A DNA AcHobo 0 210 1 4 1826 192 77 0 0 chr1 162718254 162718280 -34477152 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 4 1826 528 213 259 12 chr1 162719317 162719483 -34475949 + B3 SINE B2 3 209 -7 4 1826 261 243 138 112 chr1 162719625 162719741 -34475691 + PB1 SINE Alu 2 120 -7 4 1826 198 0 0 0 chr1 162719869 162719891 -34475541 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1826 30 77 0 0 chr1 162719901 162719966 -34475466 + AT_rich Low_complexity Low_complexity 1 65 0 4 1826 908 174 96 15 chr1 162720115 162720314 -34475118 + B3 SINE B2 1 215 -1 4 1826 618 225 35 35 chr1 162720688 162720831 -34474601 + B1F SINE Alu 1 143 -6 4 1826 1017 202 20 5 chr1 162720845 162721044 -34474388 + B3 SINE B2 9 210 -6 4 1826 21 36 0 0 chr1 162722519 162722547 -34472885 + GC_rich Low_complexity Low_complexity 1 28 0 4 1826 233 279 0 31 chr1 162722982 162723078 -34472354 + G-rich Low_complexity Low_complexity 2 94 0 4 1826 23 54 0 0 chr1 162723083 162723120 -34472312 + GC_rich Low_complexity Low_complexity 1 37 0 4 1826 728 259 38 5 chr1 162724372 162724558 -34470874 - MTE2b LTR MaLR -170 209 18 4 1826 420 20 0 0 chr1 162725158 162725207 -34470225 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1826 1005 280 22 22 chr1 162725229 162725496 -34469936 - B4A SINE B4 -23 269 3 4 1826 194 0 39 0 chr1 162725515 162725541 -34469891 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1826 603 132 97 0 chr1 162725581 162725695 -34469737 + B1_Mus1 SINE Alu 3 127 -21 4 1826 411 21 0 0 chr1 162725696 162725744 -34469688 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1826 230 237 34 0 chr1 162725744 162725803 -34469629 + GA-rich Low_complexity Low_complexity 3 63 0 4 1826 410 220 33 0 chr1 162725968 162726059 -34469373 + B1F SINE Alu 50 143 -6 4 1826 312 158 0 0 chr1 162726059 162726116 -34469316 + GA-rich Low_complexity Low_complexity 1 57 0 4 1826 381 289 92 61 chr1 162726796 162727030 -34468402 - L1ME1 LINE L1 -1 6178 5936 4 1826 662 270 56 47 chr1 162727030 162727244 -34468188 + ID_B1 SINE B4 1 216 -8 4 1826 381 289 92 61 chr1 162727244 162727304 -34468128 - L1ME1 LINE L1 -244 5935 5875 4 1826 4643 199 22 6 chr1 162727652 162728475 -34466957 - Lx6 LINE L1 -177 7283 6448 4 1826 2122 174 50 5 chr1 162728464 162728840 -34466592 + Lx6 LINE L1 6054 6446 -1014 4 1826 1209 103 34 11 chr1 162728870 162729046 -34466386 + B2_Mm2 SINE B2 5 184 -11 4 1826 790 279 152 17 chr1 162729790 162729923 -34465509 - L1MA4A LINE L1 -1544 5929 5779 4 1826 771 108 0 0 chr1 162729923 162730052 -34465380 + (TG)n Simple_repeat Simple_repeat 1 129 0 4 1826 790 286 130 16 chr1 162730052 162730323 -34465109 - L1MA4A LINE L1 -483 5820 5519 4 1826 265 321 51 0 chr1 162730508 162730645 -34464787 + L1MC4 LINE L1 6596 6739 -1303 4 1826 37 39 0 0 chr1 162730782 162730833 -34464599 + AT_rich Low_complexity Low_complexity 1 51 0 4 1826 1423 75 11 0 chr1 162730971 162731157 -34464275 - B2_Mm2 SINE B2 -5 190 3 4 1826 768 294 0 28 chr1 162731464 162731681 -34463751 - ID_B1 SINE B4 -7 217 7 4 1826 607 65 21 0 chr1 162732263 162732356 -34463076 + (TC)n Simple_repeat Simple_repeat 1 95 0 4 1826 690 290 28 0 chr1 162732534 162732710 -34462722 + B3A SINE B2 2 182 -16 4 1826 986 124 0 0 chr1 162732792 162732929 -34462503 + B1_Mus1 SINE Alu 2 138 -10 4 1826 459 0 0 0 chr1 162732929 162732980 -34462452 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1826 213 39 0 0 chr1 162732982 162733008 -34462424 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1826 406 228 262 12 chr1 162733021 162733185 -34462247 + B3 SINE B2 4 208 -8 4 1826 255 315 92 20 chr1 162733268 162733420 -34462012 + RSINE1 SINE B4 3 165 0 4 1826 263 262 12 12 chr1 162733961 162734042 -34461390 - LTR78 LTR ERV1 -88 1216 1136 4 1826 2135 137 24 80 chr1 162734044 162734497 -34460935 - RLTR24 LTR ERV1 -101 428 1 4 1826 874 169 22 44 chr1 162734569 162734749 -34460683 + URR1A DNA MER1_type 45 220 -6 4 1826 247 365 84 108 chr1 162734803 162735292 -34460140 - LTR78 LTR ERV1 -346 958 482 4 1826 378 57 0 0 chr1 162735512 162735565 -34459867 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1826 501 235 10 0 chr1 162736238 162736340 -34459092 + B4A SINE B4 131 233 -59 4 1826 299 262 0 48 chr1 162736341 162736425 -34459007 + B4 SINE B4 5 84 -208 4 1826 225 298 20 78 chr1 162736425 162736443 -34458989 + B3 SINE B2 5 100 -116 4 1826 229 284 12 12 chr1 162736479 162736561 -34458871 + (CATA)n Simple_repeat Simple_repeat 3 84 0 4 1826 1309 84 39 0 chr1 162736751 162736930 -34458502 - B2_Mm2 SINE B2 -8 187 2 4 1826 871 85 131 0 chr1 162737008 162737138 -34458294 + B1_Mus1 SINE Alu 2 148 0 4 1826 186 43 0 0 chr1 162737138 162737161 -34458271 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1826 1124 70 0 27 chr1 162737305 162737453 -34457979 + B1_Mus1 SINE Alu 5 148 0 4 1826 293 335 124 12 chr1 162737513 162737770 -34457662 - L2 LINE L2 -408 3011 2726 4 1826 661 147 100 8 chr1 162737811 162737941 -34457491 + B1_Mm SINE Alu 6 147 0 4 1826 892 214 30 5 chr1 162738021 162738223 -34457209 + B3 SINE B2 4 210 -6 4 1826 701 168 37 37 chr1 162738251 162738387 -34457045 + B1_Mur3 SINE Alu 2 137 -12 4 1826 334 134 15 15 chr1 162738415 162738483 -34456949 + GA-rich Low_complexity Low_complexity 1 68 0 4 1826 1221 106 0 0 chr1 162738484 162738664 -34456768 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1826 392 286 31 0 chr1 162738805 162738903 -34456529 + ID_B1 SINE B4 102 202 -22 4 1826 288 0 0 0 chr1 162740183 162740215 -34455217 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1826 351 345 42 55 chr1 162740242 162740646 -34454786 - L1MC4 LINE L1 -374 7668 7270 4 1826 339 269 0 0 chr1 162740769 162740847 -34454585 - PB1D10 SINE Alu -2 115 38 4 1826 738 278 153 56 chr1 162740872 162741356 -34454076 - L1MC4 LINE L1 -1017 7025 6495 4 1826 243 0 0 0 chr1 162741524 162741551 -34453881 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 4 1826 212 265 14 56 chr1 162741553 162741625 -34453807 - PB1D9 SINE Alu -11 109 41 4 1826 230 152 43 0 chr1 162741897 162741943 -34453489 + (CATA)n Simple_repeat Simple_repeat 1 48 0 4 1826 600 116 0 0 chr1 162741960 162742055 -34453377 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1826 823 320 165 27 chr1 162742060 162743064 -34452368 - L2 LINE L2 -1110 2309 1167 4 1826 1726 109 56 120 chr1 162743071 162743447 -34451985 - ORR1B1 LTR MaLR -2 392 41 4 1826 366 206 0 0 chr1 162743542 162743610 -34451822 + PB1D9 SINE Alu 1 68 -52 4 1826 3462 180 74 167 chr1 162743832 162744434 -34450998 - RMER1B Other Other 0 1066 420 4 1826 450 0 0 0 chr1 162744434 162744484 -34450948 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1826 3462 180 74 167 chr1 162744484 162744884 -34450548 - RMER1B Other Other -647 419 199 4 1826 3301 58 0 12 chr1 162744884 162745289 -34450143 - MTB LTR MaLR 0 400 1 4 1826 3462 180 74 167 chr1 162745289 162745457 -34449975 - RMER1B Other Other -868 198 5 4 1826 438 20 0 0 chr1 162745648 162745699 -34449733 + (TTA)n Simple_repeat Simple_repeat 3 53 0 4 1826 1351 84 105 18 chr1 162745799 162746028 -34449404 - ORR1A4 LTR MaLR 0 329 81 4 1826 2805 12 95 6 chr1 162746028 162746365 -34449067 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1826 29375 22 1 1 chr1 162746365 162749636 -34445796 - IAPEz-int LTR ERVK 0 6481 3210 4 1826 6446 106 143 40 chr1 162749635 162750820 -34444612 - IAPEz-int LTR ERVK -5168 1313 8 4 1826 2805 12 95 6 chr1 162750820 162751157 -34444275 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1826 448 68 122 22 chr1 162751157 162751247 -34444185 - ORR1B1 LTR MaLR -255 139 41 4 1826 525 140 140 0 chr1 162752294 162752394 -34443038 + B1_Mus2 SINE Alu 34 147 0 4 1826 183 167 0 0 chr1 162752394 162752436 -34442996 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1826 207 182 0 0 chr1 162752466 162752499 -34442933 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 4 1826 23 0 0 0 chr1 162753041 162753064 -34442368 + AT_rich Low_complexity Low_complexity 1 23 0 4 1826 227 83 0 62 chr1 162753157 162753221 -34442211 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 4 1826 682 167 150 0 chr1 162753225 162753345 -34442087 - B1_Mus1 SINE Alu -6 142 5 4 1826 664 288 7 0 chr1 162753832 162753985 -34441447 - RSINE1 SINE B4 -6 159 6 4 1826 713 287 6 0 chr1 162754184 162754365 -34441067 + B3A SINE B2 1 182 -16 4 1826 592 186 148 29 chr1 162754432 162754609 -34440823 + B3 SINE B2 2 189 -4 4 1826 297 0 0 0 chr1 162754649 162754682 -34440750 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1826 276 30 0 0 chr1 162754682 162754714 -34440718 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1826 401 195 0 72 chr1 162754717 162754800 -34440632 - B3 SINE B2 -133 83 7 5 1826 450 0 0 0 chr1 162755001 162755051 -34440381 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1826 398 299 15 7 chr1 162755932 162756067 -34439365 + B1F2 SINE Alu 1 136 -13 5 1826 5534 57 6 20 chr1 162756076 162756787 -34438645 + L1Md_F2 LINE L1 5869 6569 -13 5 1826 3320 37 0 24 chr1 162757732 162758149 -34437283 - L1Md_F3 LINE L1 -1 6583 6177 5 1826 799 133 178 6 chr1 162758149 162758323 -34437109 + MTC LTR MaLR 7 210 -211 5 1826 2427 217 89 3 chr1 162758323 162758778 -34436654 + RMER1C Other Other 721 1195 -147 5 1826 384 40 0 0 chr1 162758778 162758828 -34436604 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 5 1826 2427 217 89 3 chr1 162758828 162758945 -34436487 + RMER1C Other Other 1196 1342 0 5 1826 1133 143 15 10 chr1 162758969 162759167 -34436265 + MTC LTR MaLR 223 421 0 5 1826 756 194 28 0 chr1 162759189 162759333 -34436099 + B1_Mus1 SINE Alu 1 148 0 5 1826 359 318 12 0 chr1 162759596 162759681 -34435751 + PB1D10 SINE Alu 1 86 -31 5 1826 234 148 0 90 chr1 162759876 162759938 -34435494 + T-rich Low_complexity Low_complexity 6 61 0 5 1826 1487 73 5 0 chr1 162759938 162760129 -34435303 - B2_Mm1a SINE B2 0 193 2 5 1826 823 72 24 8 chr1 162760411 162760538 -34434894 + (GGGAGA)n Simple_repeat Simple_repeat 5 133 0 5 1826 1193 64 52 0 chr1 162760538 162760711 -34434721 + B2_Mm2 SINE B2 13 194 -1 5 1826 249 139 0 0 chr1 162760725 162760768 -34434664 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 5 1826 302 327 84 12 chr1 162760838 162761005 -34434427 - MLT1A0 LTR MaLR -94 271 93 5 1826 25 0 0 0 chr1 162761096 162761121 -34434311 + AT_rich Low_complexity Low_complexity 1 25 0 5 1826 479 267 67 34 chr1 162762524 162762733 -34432699 - B3 SINE B2 0 216 1 5 1826 1712 76 1 72 chr1 162763593 162763654 -34431778 - ORR1B1 LTR MaLR -14 380 274 5 1826 5739 114 37 7 chr1 162763654 162764521 -34430911 - Lx4A LINE L1 -3 7055 6163 5 1826 1712 134 8 129 chr1 162764521 162764855 -34430577 - ORR1B1 LTR MaLR -46 348 41 5 1826 647 327 115 52 chr1 162764948 162765332 -34430100 - MLT1A1 LTR MaLR 0 408 1 5 1826 914 110 18 6 chr1 162765343 162765508 -34429924 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 5 1826 484 311 7 20 chr1 162765547 162765698 -34429734 - B1F2 SINE Alu 0 149 1 5 1826 489 238 130 6 chr1 162765881 162766042 -34429390 + B3A SINE B2 2 182 -16 5 1826 243 0 0 0 chr1 162766197 162766224 -34429208 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1826 852 114 0 0 chr1 162766237 162766368 -34429064 - B1_Mus2 SINE Alu 0 147 17 5 1826 411 282 0 0 chr1 162767154 162767271 -34428161 - HAL1 LINE L1 -940 1567 1451 5 1826 496 303 24 19 chr1 162769044 162769256 -34426176 + L2 LINE L2 1834 2046 -1373 5 1826 238 316 54 112 chr1 162769464 162769489 -34425943 + B4 SINE B4 65 116 -176 5 1826 600 207 22 15 chr1 162769489 162769626 -34425806 + B1_Mur1 SINE Alu 10 147 -2 5 1826 238 316 54 112 chr1 162769626 162769706 -34425726 + B4 SINE B4 117 292 0 5 1826 185 0 40 0 chr1 162769939 162769964 -34425468 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1826 352 181 0 77 chr1 162770134 162770145 -34425287 + B4 SINE B4 81 85 -207 5 1826 497 172 0 0 chr1 162770145 162770232 -34425200 + B1_Mus1 SINE Alu 2 88 -60 5 1826 360 354 60 39 chr1 162770244 162770529 -34424903 + ERVL-E-int LTR ERVL 1309 1599 -4068 5 1826 1105 267 63 27 chr1 162770753 162771084 -34424348 + MTE2b LTR MaLR 9 351 -28 5 1826 538 308 26 0 chr1 162771126 162771282 -34424150 + B4 SINE B4 42 201 -91 5 1826 402 318 83 65 chr1 162771640 162772071 -34423361 + L1M5 LINE L1 3440 3878 -2268 5 1826 22 0 0 0 chr1 162772071 162772093 -34423339 + AT_rich Low_complexity Low_complexity 1 22 0 5 1826 245 241 0 17 chr1 162772115 162772174 -34423258 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1826 1482 72 0 10 chr1 162772267 162772463 -34422969 - B2_Mm2 SINE B2 0 195 2 5 1826 693 239 8 0 chr1 162772478 162772612 -34422820 + B1_Mur3 SINE Alu 2 136 -13 5 1826 252 0 0 0 chr1 162772612 162772640 -34422792 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1826 465 268 24 16 chr1 162772680 162772805 -34422627 - ORR1E LTR MaLR -161 198 73 5 1826 236 143 24 0 chr1 162772897 162772939 -34422493 - Charlie10b DNA MER1_type -141 101 59 5 1826 24 32 0 0 chr1 162773123 162773154 -34422278 + AT_rich Low_complexity Low_complexity 1 31 0 5 1826 405 0 0 0 chr1 162773269 162773314 -34422118 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1826 323 327 30 0 chr1 162773424 162773525 -34421907 - PB1D10 SINE Alu -13 104 1 5 1826 1151 186 14 14 chr1 162773679 162773886 -34421546 + B3 SINE B2 2 208 -8 5 1826 859 203 123 0 chr1 162773900 162774087 -34421345 + B3 SINE B2 1 210 -6 5 1826 31 26 0 0 chr1 162774087 162774125 -34421307 + AT_rich Low_complexity Low_complexity 1 38 0 5 1826 881 35 0 0 chr1 162774147 162774262 -34421170 + B1_Mus2 SINE Alu 33 147 0 5 1826 299 0 0 0 chr1 162774278 162774314 -34421118 + U2 snRNA snRNA 1 36 -152 5 1826 2462 183 29 4 chr1 162774379 162774607 -34420825 - L1_Mm LINE L1 -919 4964 4737 5 1826 261 83 0 0 chr1 162774607 162774643 -34420789 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1826 2462 183 29 4 chr1 162774643 162774735 -34420697 - L1_Mm LINE L1 -1147 4736 4633 5 1826 258 0 0 67 chr1 162774735 162774780 -34420652 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1826 2462 183 29 4 chr1 162774780 162774935 -34420497 - L1_Mm LINE L1 -1251 4632 4479 5 1826 3903 103 66 2 chr1 162774935 162775510 -34419922 + Lx2 LINE L1 6385 6996 -1 5 1826 255 213 0 0 chr1 162775553 162775628 -34419804 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1826 467 197 145 0 chr1 162775633 162775750 -34419682 + B1_Mur2 SINE Alu 16 149 0 5 1826 438 69 0 0 chr1 162775757 162775815 -34419617 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 1826 383 340 119 52 chr1 162775852 162776162 -34419270 + HAL1 LINE L1 1257 1587 -920 5 1826 647 277 16 37 chr1 162776222 162776413 -34419019 + B4A SINE B4 100 286 -6 5 1826 777 186 0 41 chr1 162776570 162776716 -34418716 + B1_Mus1 SINE Alu 4 143 -5 5 1826 1218 126 11 0 chr1 162776786 162776961 -34418471 + B2_Mm1t SINE B2 3 179 -14 5 1826 276 59 78 0 chr1 162777024 162777075 -34418357 + B2_Mm2 SINE B2 137 191 -4 5 1826 3550 281 118 11 chr1 162777086 162778344 -34417088 - Lx8 LINE L1 -59 7414 6023 5 1826 550 273 21 7 chr1 162778445 162778585 -34416847 + B1F SINE Alu 7 148 -1 5 1826 880 225 75 0 chr1 162778633 162778833 -34416599 - B3 SINE B2 0 216 2 5 1826 232 322 33 22 chr1 162779026 162779118 -34416314 - LTR33 LTR ERVL -170 345 253 5 1826 466 217 113 0 chr1 162779156 162779262 -34416170 + PB1D7 SINE Alu 2 119 -1 5 1826 331 247 88 22 chr1 162779281 162779372 -34416060 + PB1D9 SINE Alu 22 118 -2 5 1826 448 153 36 0 chr1 162779378 162779515 -34415917 + (CA)n Simple_repeat Simple_repeat 2 143 0 5 1826 457 180 40 6 chr1 162779532 162779705 -34415727 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1826 1130 203 29 0 chr1 162780237 162780444 -34414988 + B3 SINE B2 1 213 -3 5 1826 486 278 31 58 chr1 162780639 162780864 -34414568 + MLT2B1 LTR ERVL 1 219 -301 5 1826 303 283 26 94 chr1 162781264 162781297 -34414135 - PB1D9 SINE Alu -9 111 3 5 1826 401 250 0 0 chr1 162781297 162781381 -34414051 - ID_B1 SINE B4 -57 167 84 5 1826 5556 55 20 1 chr1 162782059 162782751 -34412681 - L1_Mus1 LINE L1 0 6567 5863 5 1826 244 315 11 11 chr1 162782871 162782961 -34412471 - Lx8 LINE L1 -352 7121 7032 5 1826 2690 146 5 12 chr1 162783249 162783673 -34411759 + MTC LTR MaLR 1 421 0 5 1826 380 191 22 0 chr1 162783699 162783788 -34411644 + PB1D9 SINE Alu 30 120 0 5 1826 1235 161 5 5 chr1 162783950 162784169 -34411263 + URR1B DNA MER1_type 1 219 -6 5 1826 1242 99 11 11 chr1 162784229 162784413 -34411019 + B2_Mm2 SINE B2 2 185 -10 5 1826 462 49 0 0 chr1 162784570 162784631 -34410801 + B1_Mus1 SINE Alu 23 83 -65 5 1826 275 215 0 97 chr1 162784631 162784642 -34410790 + MT2B LTR ERVL 186 250 -351 5 1826 894 149 7 39 chr1 162785202 162785356 -34410076 + B1_Mur2 SINE Alu 1 149 0 5 1826 471 301 0 75 chr1 162785478 162785625 -34409807 - ID_B1 SINE B4 -4 220 85 5 1826 246 62 0 0 chr1 162785816 162785848 -34409584 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1826 252 0 0 0 chr1 162786589 162786617 -34408815 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1826 448 262 81 47 chr1 162786729 162786901 -34408531 + B3A SINE B2 5 182 -16 5 1826 946 250 43 114 chr1 162786948 162787386 -34408046 - RMER10A LTR ERVL -9 433 27 5 1826 714 238 0 7 chr1 162788016 162788164 -34407268 - B1F SINE Alu 0 149 3 5 1826 10522 94 66 19 chr1 162788217 162790737 -34404695 + L1VL2 LINE L1 479 3273 -2607 5 1826 27 29 0 0 chr1 162791318 162791352 -34404080 + AT_rich Low_complexity Low_complexity 1 34 0 5 1827 1190 61 0 7 chr1 162791697 162791845 -34403587 - B1_Mus1 SINE Alu -1 147 1 5 1827 1126 166 97 10 chr1 162791848 162792043 -34403389 - B3 SINE B2 -4 212 1 5 1827 363 295 0 11 chr1 162792070 162792159 -34403273 + RSINE1 SINE B4 4 91 -74 5 1827 1052 208 244 13 chr1 162792189 162792319 -34403113 + ORR1C2 LTR MaLR 1 187 -197 5 1827 180 0 0 0 chr1 162792319 162792339 -34403093 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 5 1827 1052 208 244 13 chr1 162792339 162792520 -34402912 + ORR1C2 LTR MaLR 188 383 -1 5 1827 258 317 0 0 chr1 162792842 162792965 -34402467 + A-rich Low_complexity Low_complexity 1 123 0 5 1827 493 103 0 37 chr1 162793039 162793120 -34402312 + B1_Mus2 SINE Alu 70 147 0 5 1827 212 194 97 0 chr1 162793121 162793183 -34402249 + GA-rich Low_complexity Low_complexity 2 69 0 6 1827 405 0 0 0 chr1 162793434 162793479 -34401953 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1827 431 194 0 10 chr1 162793483 162793587 -34401845 + GA-rich Low_complexity Low_complexity 2 104 0 6 1827 441 0 0 0 chr1 162794053 162794102 -34401330 + (CATA)n Simple_repeat Simple_repeat 1 49 0 6 1827 320 271 0 0 chr1 162794382 162794452 -34400980 + RSINE1 SINE B4 79 148 -17 5 1827 213 39 0 0 chr1 162794461 162794487 -34400945 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 6 1827 382 306 0 0 chr1 162795264 162795362 -34400070 + PB1D10 SINE Alu 3 100 -17 6 1827 3089 56 5 15 chr1 162795400 162795797 -34399635 - MTA_Mm LTR MaLR 0 396 4 6 1827 2878 82 117 18 chr1 162795797 162796234 -34399198 + L1VL2 LINE L1 341 820 -5515 6 1827 1043 74 0 124 chr1 162796235 162796404 -34399028 + B1_Mus1 SINE Alu 1 148 0 6 1827 188 34 0 33 chr1 162796410 162796440 -34398992 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1827 1296 48 101 0 chr1 162796456 162796624 -34398808 + B2_Mm2 SINE B2 2 186 -9 6 1827 257 261 124 71 chr1 162796693 162796862 -34398570 + B2_Mm2 SINE B2 15 192 -3 6 1827 430 296 153 10 chr1 162796936 162797243 -34398189 + HAL1 LINE L1 1144 1494 -1013 6 1827 269 100 0 0 chr1 162797407 162797447 -34397985 + B3 SINE B2 100 139 -77 6 1827 670 244 0 0 chr1 162797447 162797578 -34397854 - B1_Mm SINE Alu -13 134 4 6 1827 485 295 14 41 chr1 162797633 162797713 -34397719 + ID_B1 SINE B4 81 161 -63 6 1827 1456 151 14 208 chr1 162797713 162798222 -34397210 - RMER17C LTR ERVK 0 410 1 6 1827 485 295 14 41 chr1 162798222 162798286 -34397146 + ID_B1 SINE B4 162 221 -3 6 1827 974 214 0 0 chr1 162798525 162798712 -34396720 - B3 SINE B2 -19 197 11 6 1827 615 196 74 15 chr1 162798731 162798866 -34396566 - B1_Mur1 SINE Alu -6 143 1 6 1827 316 323 11 72 chr1 162798888 162799068 -34396364 + HAL1 LINE L1 1411 1579 -928 6 1827 1774 167 56 15 chr1 162799396 162799737 -34395695 + ORR1B1 LTR MaLR 1 355 -39 6 1827 2101 146 180 16 chr1 162799737 162800172 -34395260 + Lx4B LINE L1 6575 7054 -4 6 1827 407 89 0 0 chr1 162800186 162800242 -34395190 + ORR1B2 LTR MaLR 312 367 0 6 1827 304 279 11 44 chr1 162800244 162800334 -34395098 + MLT1A LTR MaLR 54 140 -268 6 1827 240 246 77 0 chr1 162800349 162800414 -34395018 + B1F1 SINE Alu 9 78 -71 6 1827 198 0 0 0 chr1 162800448 162800470 -34394962 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1827 413 284 51 22 chr1 162800541 162800678 -34394754 + MLT1A LTR MaLR 232 372 -2 6 1827 28 0 0 0 chr1 162800952 162800980 -34394452 + AT_rich Low_complexity Low_complexity 1 28 0 6 1827 752 244 11 35 chr1 162801080 162801254 -34394178 + Lx9 LINE L1 6880 7049 -595 6 1827 1274 186 25 75 chr1 162801262 162801471 -34393961 - MTD LTR MaLR -7 412 206 6 1827 354 45 0 0 chr1 162801471 162801515 -34393917 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1827 558 0 0 0 chr1 162801515 162801576 -34393856 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 6 1827 1036 175 38 28 chr1 162801576 162801788 -34393644 - B3 SINE B2 -2 214 1 6 1827 1274 186 25 75 chr1 162801788 162801895 -34393537 - MTD LTR MaLR -214 205 112 6 1827 869 197 0 0 chr1 162801900 162802047 -34393385 + B1_Mus2 SINE Alu 1 147 0 6 1827 548 181 9 9 chr1 162802066 162802172 -34393260 - MTD LTR MaLR -299 120 15 6 1827 960 286 38 20 chr1 162802203 162802549 -34392883 + Lx9 LINE L1 7060 7411 -233 6 1827 1209 72 6 0 chr1 162802624 162802791 -34392641 + B2_Mm1a SINE B2 2 169 -24 6 1827 243 0 0 0 chr1 162803299 162803326 -34392106 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1827 266 311 66 90 chr1 162803370 162803582 -34391850 + MIRb SINE MIR 51 257 -11 6 1827 1016 90 14 7 chr1 162803669 162803815 -34391617 + B1_Mus1 SINE Alu 1 147 -1 6 1827 239 286 0 0 chr1 162803903 162803952 -34391480 + B1F1 SINE Alu 2 50 -99 6 1827 941 239 0 15 chr1 162804273 162804473 -34390959 + B3A SINE B2 1 197 -1 6 1827 512 239 28 0 chr1 162804534 162804643 -34390789 - B1_Mur2 SINE Alu -37 112 1 6 1827 487 305 40 35 chr1 162804653 162804862 -34390570 - B3A SINE B2 -5 211 3 6 1827 259 232 0 0 chr1 162805309 162805365 -34390067 - PB1D10 SINE Alu -22 95 40 6 1827 26 30 0 0 chr1 162805378 162805411 -34390021 + AT_rich Low_complexity Low_complexity 1 33 0 6 1827 535 248 66 0 chr1 162805961 162806082 -34389350 + ID_B1 SINE B4 95 223 -1 6 1827 784 89 0 16 chr1 162806207 162806332 -34389100 + (TTC)n Simple_repeat Simple_repeat 1 123 0 6 1827 289 231 24 42 chr1 162806436 162806490 -34388942 + ORR1B1-int LTR MaLR 596 646 -863 6 1827 835 88 16 0 chr1 162806490 162806615 -34388817 + B1_Mus1 SINE Alu 1 127 -21 6 1827 679 174 29 43 chr1 162806717 162806855 -34388577 - B1_Mur4 SINE Alu -1 149 14 6 1827 243 0 0 0 chr1 162807139 162807166 -34388266 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1827 610 278 20 50 chr1 162807198 162807399 -34388033 - B3A SINE B2 -3 195 1 6 1827 490 177 10 0 chr1 162808209 162808305 -34387127 + B1_Mus1 SINE Alu 40 136 -12 6 1827 264 59 0 0 chr1 162808307 162808341 -34387091 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6 1827 627 88 0 0 chr1 162808354 162808445 -34386987 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 6 1827 21 0 0 0 chr1 162809761 162809782 -34385650 + AT_rich Low_complexity Low_complexity 1 21 0 6 1827 807 152 0 29 chr1 162809806 162809942 -34385490 - B1_Mus1 SINE Alu -11 137 6 6 1827 204 40 0 0 chr1 162810163 162810188 -34385244 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6 1827 998 81 81 0 chr1 162810358 162810494 -34384938 - B1_Mus2 SINE Alu 0 147 1 6 1827 398 233 16 49 chr1 162810528 162810650 -34384782 + MTD LTR MaLR 2 119 -300 6 1827 892 265 20 0 chr1 162810684 162810888 -34384544 - B3 SINE B2 -8 208 1 6 1827 503 246 0 60 chr1 162810888 162810985 -34384447 + MTD LTR MaLR 115 203 -216 6 1827 933 285 139 48 chr1 162811110 162811586 -34383846 + Lx8 LINE L1 6816 7334 -139 6 1827 1665 147 104 29 chr1 162811594 162812006 -34383426 + RMER17C LTR ERVK 16 453 -505 6 1827 225 154 0 0 chr1 162812006 162812045 -34383387 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 1827 695 215 157 0 chr1 162812175 162812366 -34383066 + MTD LTR MaLR 199 419 0 6 1827 415 220 36 18 chr1 162812438 162812549 -34382883 + B3 SINE B2 104 216 0 6 1827 25 0 0 0 chr1 162812551 162812576 -34382856 + AT_rich Low_complexity Low_complexity 1 25 0 6 1827 948 117 13 33 chr1 162812605 162812755 -34382677 + B1_Mus1 SINE Alu 2 148 0 6 1827 3277 51 13 0 chr1 162812770 162813161 -34382271 - MTA_Mm LTR MaLR 0 396 1 6 1827 326 297 49 33 chr1 162813197 162813340 -34382092 + B1F SINE Alu 4 148 0 6 1827 368 305 0 0 chr1 162813358 162813440 -34381992 + ID4 SINE ID 2 83 0 6 1827 323 254 93 60 chr1 162814070 162814089 -34381343 - MIR SINE MIR -86 176 164 6 1827 1359 254 12 65 chr1 162814089 162814489 -34380943 - MTEa LTR MaLR 0 379 1 6 1827 323 254 93 60 chr1 162814489 162814620 -34380812 - MIR SINE MIR -99 163 22 6 1827 835 242 82 82 chr1 162814679 162814739 -34380693 + RMER10A LTR ERVL 1 57 -385 6 1827 1290 57 79 17 chr1 162814739 162814917 -34380515 + B2_Mm2 SINE B2 1 189 -6 6 1827 835 242 82 82 chr1 162814917 162815261 -34380171 + RMER10A LTR ERVL 58 405 -37 6 1827 784 120 0 29 chr1 162815254 162815391 -34380041 - ORR1A2 LTR MaLR -193 134 2 6 1827 414 106 0 15 chr1 162815467 162815534 -34379898 - ORR1D1 LTR MaLR -308 66 1 6 1827 335 313 137 44 chr1 162815534 162815756 -34379676 - ORR1E LTR MaLR -104 255 13 6 1827 202 286 0 0 chr1 162816596 162816645 -34378787 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1827 186 43 0 0 chr1 162816778 162816801 -34378631 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 6 1827 363 164 0 0 chr1 162816808 162816875 -34378557 + B1_Mur2 SINE Alu 83 149 0 6 1827 980 96 90 0 chr1 162817094 162817250 -34378182 + B2_Mm2 SINE B2 20 189 -6 6 1827 1057 195 53 10 chr1 162817589 162817796 -34377636 + B3 SINE B2 1 216 0 6 1827 279 146 0 0 chr1 162817819 162817865 -34377567 + B2_Mm2 SINE B2 2 47 -148 6 1827 910 26 0 0 chr1 162817865 162817982 -34377450 + B1_Mm SINE Alu 1 117 -30 6 1827 862 130 19 25 chr1 162817981 162818139 -34377293 + B2_Mm2 SINE B2 39 195 0 6 1827 975 209 39 0 chr1 162818594 162818800 -34376632 + B3 SINE B2 3 216 0 6 1827 1225 114 23 0 chr1 162818801 162818976 -34376456 - B2_Mm2 SINE B2 -15 180 2 6 1827 370 195 12 12 chr1 162818987 162819070 -34376362 - tRNA-Leu-CTG tRNA tRNA -3 83 1 6 1827 333 131 0 0 chr1 162819116 162819177 -34376255 + (CAGA)n Simple_repeat Simple_repeat 1 61 0 6 1827 873 205 44 29 chr1 162819254 162819460 -34375972 + B3 SINE B2 4 212 -4 6 1827 1607 148 90 68 chr1 162819480 162819879 -34375553 + RMER17C LTR ERVK 1 408 -2 6 1827 585 232 0 35 chr1 162819917 162820060 -34375372 + B4 SINE B4 6 143 -149 6 1827 202 180 33 0 chr1 162820308 162820369 -34375063 + CT-rich Low_complexity Low_complexity 2 64 0 6 1827 452 158 9 0 chr1 162820487 162820601 -34374831 + CT-rich Low_complexity Low_complexity 2 116 0 6 1827 530 292 19 43 chr1 162820671 162820832 -34374600 + B4 SINE B4 136 292 0 6 1827 1972 119 3 56 chr1 162821085 162821424 -34374008 - ORR1A4 LTR MaLR -8 321 1 6 1827 1705 116 27 173 chr1 162821497 162821977 -34373455 + RMER17C LTR ERVK 1 410 0 6 1827 204 242 0 15 chr1 162822534 162822601 -34372831 + T-rich Low_complexity Low_complexity 4 69 0 6 1827 697 122 179 0 chr1 162822603 162822726 -34372706 - B1_Mm SINE Alu -1 146 2 6 1827 621 236 24 99 chr1 162822866 162823078 -34372354 - B3A SINE B2 0 198 3 6 1827 710 183 46 0 chr1 162823102 162823233 -34372199 + B1_Mur3 SINE Alu 12 148 -1 6 1827 255 61 0 0 chr1 162823774 162823807 -34371625 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 6 1827 272 190 0 8 chr1 162823849 162823914 -34371518 + PB1 SINE Alu 56 125 -2 6 1827 419 0 0 19 chr1 162823979 162824031 -34371401 + (TAA)n Simple_repeat Simple_repeat 2 52 0 6 1827 1402 189 53 0 chr1 162824337 162824622 -34370810 + ORR1D1 LTR MaLR 75 374 0 7 1827 351 231 99 0 chr1 162824624 162824715 -34370717 + PB1D10 SINE Alu 10 109 -8 7 1827 2578 190 65 11 chr1 162826368 162827035 -34368397 - Lx4B LINE L1 -1 7057 6253 7 1827 408 209 203 7 chr1 162827038 162827196 -34368236 + MER58A DNA MER1_type 36 224 0 7 1827 28 0 0 0 chr1 162827345 162827373 -34368059 + AT_rich Low_complexity Low_complexity 1 28 0 7 1827 569 269 19 98 chr1 162827434 162827648 -34367784 + B3A SINE B2 2 198 0 7 1827 1565 38 27 0 chr1 162828426 162828610 -34366822 + B2_Mm1t SINE B2 2 190 -3 7 1827 1280 129 5 5 chr1 162829016 162829211 -34366221 - B2_Mm2 SINE B2 0 195 1 7 1827 832 179 15 0 chr1 162829308 162829442 -34365990 + B1_Mur4 SINE Alu 2 137 -13 7 1827 231 88 0 0 chr1 162829471 162829505 -34365927 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1827 1146 58 6 0 chr1 162829510 162829666 -34365766 + B2_Mm2 SINE B2 2 158 -37 7 1827 186 43 0 0 chr1 162829667 162829690 -34365742 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1827 21 0 0 0 chr1 162829691 162829712 -34365720 + AT_rich Low_complexity Low_complexity 1 21 0 7 1827 305 293 52 0 chr1 162829792 162829908 -34365524 + MLT1B LTR MaLR 234 355 -35 7 1827 252 0 0 0 chr1 162830976 162831004 -34364428 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1827 270 248 255 9 chr1 162831025 162831131 -34364301 - ORR1D2 LTR MaLR -13 357 226 7 1827 477 0 0 0 chr1 162831141 162831194 -34364238 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 1827 825 11 0 0 chr1 162831194 162831288 -34364144 + (GAA)n Simple_repeat Simple_repeat 3 96 0 7 1827 247 240 120 0 chr1 162831345 162831420 -34364012 - ORR1D2 LTR MaLR -286 84 1 7 1827 899 129 7 14 chr1 162831496 162831637 -34363795 - B1_Mus1 SINE Alu -7 141 2 7 1827 236 296 14 0 chr1 162831799 162831870 -34363562 + ID_B1 SINE B4 132 203 -21 7 1827 484 288 0 0 chr1 162832028 162832146 -34363286 - PB1D7 SINE Alu 0 120 3 7 1827 450 290 14 0 chr1 162832236 162832374 -34363058 + B1F2 SINE Alu 10 149 0 7 1827 396 183 207 9 chr1 162832606 162832722 -34362710 - B1_Mus2 SINE Alu -8 139 1 7 1827 808 184 0 26 chr1 162832750 162832901 -34362531 - B1_Mur3 SINE Alu -1 148 2 7 1827 562 261 207 42 chr1 162832964 162833399 -34362033 - RMER21B LTR ERV1 -49 898 299 7 1827 315 283 87 48 chr1 162833415 162833519 -34361913 - PB1D10 SINE Alu -41 108 1 7 1827 21 0 0 0 chr1 162833535 162833556 -34361876 + AT_rich Low_complexity Low_complexity 1 21 0 7 1827 677 192 39 0 chr1 162833588 162833718 -34361714 - B1_Mur1 SINE Alu -7 142 8 7 1827 495 266 136 21 chr1 162834495 162834784 -34360648 - MER44A DNA MER2_type -10 329 1 7 1827 217 314 52 136 chr1 162834956 162835017 -34360415 + B1F SINE Alu 1 55 -94 7 1827 895 103 0 16 chr1 162835017 162835145 -34360287 + B1_Mus1 SINE Alu 4 129 -19 7 1827 222 215 34 97 chr1 162835145 162835238 -34360194 + PB1D7 SINE Alu 47 142 -7 7 1827 757 185 7 46 chr1 162835542 162835695 -34359737 + B1_Mur3 SINE Alu 3 149 0 7 1827 204 40 0 0 chr1 162835695 162835720 -34359712 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1827 858 52 0 0 chr1 162836006 162836122 -34359310 + (CA)n Simple_repeat Simple_repeat 1 116 0 7 1827 244 269 0 0 chr1 162836548 162836615 -34358817 + GA-rich Low_complexity Low_complexity 2 68 0 7 1827 234 156 0 0 chr1 162836740 162836785 -34358647 + (CGG)n Simple_repeat Simple_repeat 2 46 0 7 1827 294 222 68 61 chr1 162837890 162838039 -34357393 + PB1D10 SINE Alu 1 149 0 7 1827 385 221 23 11 chr1 162838333 162838420 -34357012 - PB1D10 SINE Alu 0 117 30 7 1827 377 238 0 70 chr1 162839054 162839140 -34356292 + B4A SINE B4 7 86 -206 7 1827 271 292 0 63 chr1 162839070 162839165 -34356267 + BC1_Mm scRNA scRNA 18 106 -46 7 1827 299 49 0 0 chr1 162839179 162839220 -34356212 + B1_Mus2 SINE Alu 107 147 0 7 1827 360 179 31 19 chr1 162839240 162839317 -34356115 + ID4 SINE ID 2 73 -10 7 1827 568 287 27 110 chr1 162839265 162839484 -34355948 + ID_B1 SINE B4 23 223 -1 7 1827 233 307 69 30 chr1 162839587 162839718 -34355714 - MIRc SINE MIR -109 159 24 7 1827 588 265 101 41 chr1 162839955 162840124 -34355308 - B3A SINE B2 0 198 20 7 1827 287 252 239 17 chr1 162840709 162840826 -34354606 - B4 SINE B4 -149 143 1 7 1827 342 0 0 0 chr1 162840903 162840941 -34354491 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1827 487 248 197 16 chr1 162840950 162841077 -34354355 - B3 SINE B2 -66 150 1 7 1827 379 296 50 36 chr1 162841125 162841265 -34354167 + B1F1 SINE Alu 1 142 -7 7 1827 446 237 179 51 chr1 162841594 162841790 -34353642 - ID_B1 SINE B4 0 224 4 7 1827 376 266 163 6 chr1 162841875 162842053 -34353379 - B3 SINE B2 -10 206 1 7 1827 221 57 0 103 chr1 162842311 162842350 -34353082 + B3A SINE B2 1 35 -163 7 1827 300 139 95 60 chr1 162842344 162842428 -34353004 + PB1D9 SINE Alu 33 119 -1 7 1827 665 236 27 163 chr1 162842437 162842621 -34352811 + B3A SINE B2 36 203 -13 7 1827 671 0 0 0 chr1 162842678 162842761 -34352671 + L1Md_A LINE L1 6500 6582 0 7 1827 222 113 0 86 chr1 162842832 162842867 -34352565 + T-rich Low_complexity Low_complexity 24 54 0 7 1827 779 148 6 63 chr1 162842867 162843026 -34352406 - B1_Mur4 SINE Alu 0 150 1 7 1827 222 113 0 86 chr1 162843026 162843048 -34352384 + T-rich Low_complexity Low_complexity 2 23 0 7 1827 282 270 0 16 chr1 162843071 162843135 -34352297 - B3A SINE B2 -47 151 89 7 1827 297 315 90 100 chr1 162843261 162843540 -34351892 - B4A SINE B4 -16 276 1 7 1827 865 173 0 0 chr1 162843579 162843718 -34351714 - B1_Mur2 SINE Alu -2 147 9 7 1827 26 30 0 0 chr1 162843723 162843756 -34351676 + AT_rich Low_complexity Low_complexity 1 33 0 7 1827 282 187 12 107 chr1 162843767 162843851 -34351581 - MER3 DNA MER1_type -63 146 71 7 1827 606 214 31 16 chr1 162843834 162843962 -34351470 + B1_Mur1 SINE Alu 13 142 -7 7 1827 782 238 31 26 chr1 162844031 162844225 -34351207 + B3A SINE B2 1 195 -3 7 1827 351 212 0 0 chr1 162844430 162844515 -34350917 + (TA)n Simple_repeat Simple_repeat 2 86 0 7 1827 40 37 0 0 chr1 162844847 162844901 -34350531 + AT_rich Low_complexity Low_complexity 1 54 0 7 1827 817 161 14 35 chr1 162845031 162845173 -34350259 - B1_Mm SINE Alu -8 139 1 7 1827 1410 263 42 42 chr1 162845176 162845290 -34350142 - L1MA6 LINE L1 -471 5829 5699 7 1827 792 94 213 30 chr1 162845290 162845454 -34349978 - B2_Mm2 SINE B2 0 195 2 7 1827 1410 264 41 42 chr1 162845454 162846018 -34349414 - L1MA6 LINE L1 -570 5730 5125 7 1827 457 227 100 15 chr1 162846019 162846149 -34349283 - B1_Mur3 SINE Alu -7 142 2 7 1827 1143 277 50 23 chr1 162846151 162846716 -34348716 - L1MA6 LINE L1 -1150 4993 4414 7 1827 376 305 113 7 chr1 162846737 162846879 -34348553 - RSINE1 SINE B4 -8 157 1 7 1827 461 216 31 0 chr1 162846902 162846999 -34348433 + B1F2 SINE Alu 44 143 -6 7 1827 756 191 171 11 chr1 162847009 162847184 -34348248 + B3 SINE B2 4 206 -10 7 1827 1400 214 20 23 chr1 162848497 162848851 -34346581 + Lx4B LINE L1 6682 7034 -24 7 1827 180 0 0 0 chr1 162848853 162848873 -34346559 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 7 1827 417 206 9 118 chr1 162849054 162849164 -34346268 + PB1D7 SINE Alu 22 119 -1 7 1827 291 253 110 0 chr1 162849230 162849321 -34346111 + MIR SINE MIR 113 213 -49 7 1827 320 42 0 59 chr1 162849364 162849415 -34346017 - B1_Mus2 SINE Alu 0 147 100 7 1827 1338 104 89 14 chr1 162849414 162849628 -34345804 + RMER6A LTR ERVK 527 756 0 7 1827 789 85 90 23 chr1 162849788 162849921 -34345511 + B1_Mur4 SINE Alu 1 142 -8 7 1827 398 65 16 0 chr1 162849921 162849983 -34345449 + (CAA)n Simple_repeat Simple_repeat 2 64 0 7 1827 1084 57 50 0 chr1 162850461 162850601 -34344831 + B1_Mus1 SINE Alu 2 148 0 7 1827 347 267 0 43 chr1 162850750 162850844 -34344588 - PB1D9 SINE Alu -15 105 16 7 1827 312 314 87 10 chr1 162851161 162851252 -34344180 + PB1D10 SINE Alu 1 99 -18 7 1827 1382 186 47 71 chr1 162851252 162851617 -34343815 - RLTR31_Mm LTR ERVK 0 561 206 7 1827 1195 47 0 13 chr1 162851648 162851798 -34343634 + B1_Mus1 SINE Alu 1 148 0 7 1827 208 96 19 37 chr1 162851801 162851855 -34343577 + A-rich Low_complexity Low_complexity 2 54 0 7 1827 495 196 111 20 chr1 162851885 162851984 -34343448 + B1_Mus1 SINE Alu 34 141 -7 7 1827 1427 75 37 0 chr1 162851991 162852179 -34343253 + B2_Mm2 SINE B2 1 195 0 7 1827 290 281 19 107 chr1 162852192 162852365 -34343067 + B3 SINE B2 37 198 0 7 1827 1364 89 5 10 chr1 162852414 162852606 -34342826 + B2_Mm2 SINE B2 2 192 -3 7 1827 1563 37 0 16 chr1 162852825 162853017 -34342415 - B2_Mm1a SINE B2 -4 189 1 7 1827 472 175 36 80 chr1 162853318 162853372 -34342060 + B1_Mus2 SINE Alu 41 90 -57 7 1827 1259 161 13 26 chr1 162853372 162853601 -34341831 - URR1A DNA MER1_type 0 226 1 7 1827 472 175 36 80 chr1 162853601 162853658 -34341774 + B1_Mus2 SINE Alu 91 147 0 7 1827 745 161 27 66 chr1 162853664 162853840 -34341592 + B2_Mm2 SINE B2 2 198 0 7 1827 308 0 57 19 chr1 162853948 162854001 -34341431 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1827 276 305 0 0 chr1 162855117 162855176 -34340256 - Tigger7 DNA MER2_type -10 2481 2423 7 1827 272 87 19 115 chr1 162855284 162855336 -34340096 + B1F1 SINE Alu 88 134 -15 7 1827 542 216 159 8 chr1 162855497 162855623 -34339809 + MER44D DNA MER2_type 55 199 -506 7 1827 1220 34 0 0 chr1 162855938 162856084 -34339348 + B1_Mm SINE Alu 2 147 0 8 1827 180 0 0 0 chr1 162856084 162856104 -34339328 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1827 24 53 0 0 chr1 162856107 162856145 -34339287 + AT_rich Low_complexity Low_complexity 1 38 0 8 1827 353 322 2 2 chr1 162856184 162856302 -34339130 - B4A SINE B4 -1 291 174 8 1827 755 259 16 16 chr1 162856324 162856512 -34338920 - B3A SINE B2 -6 192 5 8 1827 952 226 60 35 chr1 162856524 162856841 -34338591 - L1M2 LINE L1 -982 5161 4837 8 1827 772 219 126 0 chr1 162856955 162857138 -34338294 - B3 SINE B2 -10 206 1 8 1827 579 271 35 7 chr1 162857160 162857301 -34338131 - RSINE1 SINE B4 -17 148 4 8 1827 3861 127 84 27 chr1 162857338 162858053 -34337379 + RMER6A LTR ERVK 1 756 0 8 1827 416 265 40 10 chr1 162858455 162858554 -34336878 - PB1D9 SINE Alu -13 107 6 8 1827 1291 259 58 81 chr1 162858561 162859082 -34336350 - Lx8 LINE L1 -59 7414 6906 8 1827 276 273 18 0 chr1 162859356 162859411 -34336021 + ID4 SINE ID 22 77 -6 8 1827 180 363 68 75 chr1 162859623 162859769 -34335663 + MIRm SINE MIR 68 212 -64 8 1827 208 135 0 0 chr1 162859782 162859819 -34335613 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 8 1827 915 289 83 30 chr1 162860538 162860937 -34334495 + L1MC3 LINE L1 6558 6977 -808 8 1827 360 229 56 28 chr1 162861251 162861359 -34334073 + PB1D9 SINE Alu 3 113 -7 8 1827 897 263 5 5 chr1 162861381 162861568 -34333864 - B3A SINE B2 -10 188 2 8 1827 435 118 11 23 chr1 162861752 162861839 -34333593 + GA-rich Low_complexity Low_complexity 2 87 0 8 1827 23 54 0 0 chr1 162861925 162861962 -34333470 + AT_rich Low_complexity Low_complexity 1 37 0 8 1827 475 236 87 31 chr1 162862245 162862372 -34333060 - RSINE1 SINE B4 -28 137 4 8 1827 471 295 143 26 chr1 162862528 162863014 -34332418 + L1MC3 LINE L1 7211 7753 -32 8 1827 255 70 16 66 chr1 162863137 162863198 -34332234 + T-rich Low_complexity Low_complexity 1 58 0 8 1827 180 0 0 0 chr1 162863517 162863537 -34331895 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1827 1212 54 0 0 chr1 162863537 162863684 -34331748 - B1_Mus1 SINE Alu 0 148 2 8 1827 682 253 168 5 chr1 162863689 162863880 -34331552 - ID_B1 SINE B4 -1 223 2 8 1827 489 137 163 31 chr1 162863909 162864007 -34331425 + B1_Mur2 SINE Alu 38 148 -1 8 1827 382 281 103 41 chr1 162864599 162864744 -34330688 + B3A SINE B2 40 193 -5 8 1827 856 174 7 0 chr1 162865067 162865211 -34330221 - B1_Mus1 SINE Alu -3 145 1 8 1827 495 273 16 190 chr1 162865256 162865352 -34330080 + B3 SINE B2 2 100 -116 8 1827 1170 54 7 0 chr1 162865352 162865499 -34329933 + B1_Mus1 SINE Alu 1 148 0 8 1827 495 273 16 190 chr1 162865499 162865655 -34329777 + B3 SINE B2 101 210 -6 8 1827 1139 85 66 38 chr1 162865806 162865989 -34329443 - B2_Mm2 SINE B2 -7 188 1 8 1827 767 182 43 14 chr1 162866719 162866858 -34328574 - B1_Mur2 SINE Alu 0 149 7 8 1827 276 262 78 23 chr1 162866874 162867003 -34328429 + L1MA7 LINE L1 6124 6259 -32 8 1827 237 33 0 0 chr1 162867030 162867060 -34328372 + U6 snRNA snRNA 1 30 -77 8 1827 386 255 123 0 chr1 162867135 162867241 -34328191 + PB1D7 SINE Alu 1 119 -1 8 1827 676 318 112 63 chr1 162867369 162867456 -34327976 + B4 SINE B4 2 84 -208 8 1827 559 226 321 0 chr1 162867456 162867615 -34327817 + B3 SINE B2 1 210 -6 8 1827 676 318 112 63 chr1 162867615 162867796 -34327636 + B4 SINE B4 85 283 -9 8 1827 270 224 62 73 chr1 162867818 162867914 -34327518 + PB1D7 SINE Alu 18 146 -1 8 1827 304 276 43 116 chr1 162867914 162868078 -34327354 + L1MB8 LINE L1 6022 6173 -5 8 1827 858 148 42 7 chr1 162868410 162868553 -34326879 - B1_Mur1 SINE Alu -1 148 1 8 1827 2714 85 50 3 chr1 162868801 162869179 -34326253 + MTA_Mm LTR MaLR 1 396 0 8 1827 210 71 0 0 chr1 162869306 162869334 -34326098 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1827 207 0 0 0 chr1 162869341 162869364 -34326068 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1827 505 235 0 0 chr1 162869364 162869462 -34325970 - ID_B1 SINE B4 -1 223 126 8 1827 773 152 0 0 chr1 162869855 162869973 -34325459 - B1_Mus1 SINE Alu 0 148 31 8 1827 586 181 207 0 chr1 162870731 162870847 -34324585 - B1_Mus2 SINE Alu -7 140 1 8 1827 309 277 0 0 chr1 162871353 162871418 -34324014 - ID4_ SINE ID -16 67 3 8 1827 1191 244 109 16 chr1 162871480 162871629 -34323803 - MTD LTR MaLR -3 416 263 8 1827 1199 21 0 33 chr1 162871629 162871780 -34323652 + B1_Mus2 SINE Alu 2 147 0 8 1827 1191 244 109 16 chr1 162871780 162871951 -34323481 - MTD LTR MaLR -157 262 66 8 1827 219 88 0 0 chr1 162872282 162872316 -34323116 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1827 555 298 14 28 chr1 162872343 162872488 -34322944 - RSINE1 SINE B4 -11 154 12 8 1827 760 167 32 0 chr1 162873111 162873237 -34322195 - B3 SINE B2 -86 130 1 8 1827 225 0 0 0 chr1 162873334 162873359 -34322073 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1827 234 342 40 0 chr1 162873668 162873744 -34321688 - MER5A DNA MER1_type -77 112 34 8 1827 374 167 0 0 chr1 162873825 162873885 -34321547 - B1_Mus1 SINE Alu -88 60 1 8 1827 1771 146 23 72 chr1 162873966 162874312 -34321120 - ORR1A4 LTR MaLR 0 329 1 8 1827 1222 135 5 0 chr1 162874312 162874505 -34320927 - ORR1A4-int LTR MaLR 0 1963 1770 8 1827 327 134 75 0 chr1 162874920 162874987 -34320445 - Lx LINE L1 -2 6652 6581 8 1827 2809 257 80 28 chr1 162875141 162875464 -34319968 - Lx8 LINE L1 -122 7351 7018 8 1827 1425 75 16 0 chr1 162875464 162875651 -34319781 - B2_Mm2 SINE B2 -5 190 1 8 1827 2809 257 80 28 chr1 162875651 162876219 -34319213 - Lx8 LINE L1 -456 7017 6414 8 1827 302 272 0 12 chr1 162877941 162878023 -34317409 + L2 LINE L2 1933 2013 -1406 8 1827 342 0 0 0 chr1 162878031 162878069 -34317363 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1827 730 227 51 14 chr1 162878070 162878327 -34317105 - MTE2a LTR MaLR -45 334 1 8 1827 714 185 15 15 chr1 162878679 162878816 -34316616 + B3 SINE B2 3 139 -77 8 1827 245 293 184 81 chr1 162879329 162879552 -34315880 - RLTR24 LTR ERV1 0 529 284 8 1827 527 242 58 73 chr1 162879579 162879784 -34315648 - Lx8 LINE L1 -380 7093 6892 8 1827 1009 166 69 0 chr1 162879827 162880002 -34315430 - B3 SINE B2 -15 201 15 8 1827 341 325 23 45 chr1 162880033 162880165 -34315267 + RSINE1 SINE B4 2 130 -35 8 1827 21 36 0 0 chr1 162880165 162880193 -34315239 + AT_rich Low_complexity Low_complexity 1 28 0 8 1827 1085 124 43 33 chr1 162880544 162880728 -34314704 + B2_Mm2 SINE B2 1 186 -9 8 1827 309 306 23 53 chr1 162881341 162881472 -34313960 - B1_Mm SINE Alu -20 127 1 8 1827 542 252 30 22 chr1 162881361 162881495 -34313937 - ID_B1 SINE B4 -34 190 56 8 1827 219 103 0 0 chr1 162881976 162882015 -34313417 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 8 1827 21 0 0 0 chr1 162882185 162882206 -34313226 + AT_rich Low_complexity Low_complexity 1 21 0 8 1827 414 250 60 34 chr1 162882417 162882428 -34313004 - CYRA11_Mm Unknown Y-chromosome -300 317 237 8 1827 812 101 23 15 chr1 162882428 162882559 -34312873 + URR1B DNA MER1_type 94 225 0 8 1827 528 174 231 17 chr1 162882603 162882720 -34312712 + B1_Mur2 SINE Alu 7 148 -1 8 1827 638 182 23 31 chr1 162882957 162883087 -34312345 - B1F SINE Alu -2 147 19 8 1827 286 236 153 63 chr1 162882967 162883157 -34312275 + YREP_Mm Unknown Unknown 174 380 -1432 8 1827 553 305 60 23 chr1 162883600 162883818 -34311614 - Lx8 LINE L1 -132 7341 7116 8 1827 225 295 19 131 chr1 162883842 162883888 -34311544 + MT2B2 LTR ERVL 116 252 -327 8 1827 225 245 37 64 chr1 162883888 162883903 -34311529 - YREP_Mm Unknown Unknown -1485 327 316 8 1827 507 208 84 8 chr1 162883903 162884034 -34311398 + B1F1 SINE Alu 1 141 -8 8 1827 1328 83 11 0 chr1 162884060 162884240 -34311192 + B2_Mm1t SINE B2 1 182 -11 8 1827 725 173 8 8 chr1 162884695 162884823 -34310609 - B1_Mus2 SINE Alu -19 128 1 8 1827 313 340 147 53 chr1 162885388 162885633 -34309799 - B4 SINE B4 -23 269 2 8 1827 513 0 0 0 chr1 162885821 162885878 -34309554 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 8 1827 766 151 63 0 chr1 162886184 162886310 -34309122 + B1_Mur4 SINE Alu 1 134 -16 8 1827 786 109 0 0 chr1 162886318 162886437 -34308995 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 8 1827 364 361 66 19 chr1 162886463 162886675 -34308757 - L1M5 LINE L1 -1068 5078 4857 8 1827 229 259 256 12 chr1 162886691 162886777 -34308655 + PB1D10 SINE Alu 6 112 -5 8 1827 360 0 0 0 chr1 162886850 162886890 -34308542 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8 1827 487 269 92 0 chr1 162887370 162887500 -34307932 - B1F SINE Alu -6 143 2 8 1827 658 229 184 0 chr1 162887627 162887806 -34307626 + ID_B1 SINE B4 2 213 -11 8 1827 839 175 0 28 chr1 162887896 162888037 -34307395 + B1_Mur4 SINE Alu 1 137 -13 8 1827 1161 82 0 0 chr1 162888182 162888329 -34307103 + B1_Mus1 SINE Alu 2 148 0 8 1827 237 286 0 31 chr1 162888410 162888475 -34306957 - B1_Mus2 SINE Alu -82 65 3 8 1827 29 47 0 0 chr1 162888835 162888878 -34306554 + AT_rich Low_complexity Low_complexity 1 43 0 8 1827 423 83 0 0 chr1 162889241 162889301 -34306131 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1827 206 156 0 22 chr1 162889295 162889341 -34306091 + CT-rich Low_complexity Low_complexity 3 47 0 8 1827 1239 34 7 0 chr1 162889726 162889872 -34305560 + B1_Mm SINE Alu 1 147 0 8 1827 757 266 10 60 chr1 162890037 162890237 -34305195 + B3A SINE B2 2 191 -7 8 1827 25 31 0 0 chr1 162890368 162890400 -34305032 + AT_rich Low_complexity Low_complexity 1 32 0 9 1827 342 0 0 0 chr1 162890564 162890602 -34304830 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1827 304 281 96 10 chr1 162890640 162890744 -34304688 - PB1 SINE Alu -14 113 1 9 1827 295 317 48 40 chr1 162890756 162890881 -34304551 - B1F1 SINE Alu -7 142 17 9 1827 796 240 44 24 chr1 162890950 162891155 -34304277 - B3 SINE B2 -7 209 1 9 1827 25 0 0 0 chr1 162891235 162891260 -34304172 + AT_rich Low_complexity Low_complexity 1 25 0 9 1827 215 252 149 37 chr1 162891261 162891368 -34304064 + PB1D9 SINE Alu 2 120 0 9 1827 452 153 12 0 chr1 162891368 162891453 -34303979 + GA-rich Low_complexity Low_complexity 1 86 0 9 1827 1417 77 6 0 chr1 162891795 162891978 -34303454 + B2_Mm1t SINE B2 3 186 -7 9 1827 1654 27 0 0 chr1 162892675 162892860 -34302572 - B2_Mm1a SINE B2 -6 187 3 9 1827 792 239 43 19 chr1 162892978 162893187 -34302245 + ID_B1 SINE B4 1 214 -10 9 1827 293 201 10 78 chr1 162893282 162893382 -34302050 + B4A SINE B4 49 132 -160 9 1827 214 281 18 0 chr1 162894008 162894065 -34301367 - PB1D10 SINE Alu -8 109 52 9 1827 500 301 52 31 chr1 162894164 162894356 -34301076 - B3A SINE B2 -2 196 1 9 1827 404 245 160 0 chr1 162894678 162894784 -34300648 + B3A SINE B2 34 156 -42 9 1827 228 35 0 0 chr1 162894824 162894853 -34300579 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 9 1827 21 57 0 0 chr1 162896022 162896057 -34299375 + AT_rich Low_complexity Low_complexity 1 35 0 9 1827 482 166 2 9 chr1 162896065 162896168 -34299264 - B1_Mus2 SINE Alu -5 144 45 9 1827 276 211 113 0 chr1 162896244 162896315 -34299117 + PB1D7 SINE Alu 34 112 -8 9 1827 476 248 153 15 chr1 162896834 162896965 -34298467 + B1_Mur2 SINE Alu 1 149 0 9 1827 234 0 0 0 chr1 162897017 162897043 -34298389 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1827 1103 73 0 0 chr1 162897043 162897179 -34298253 - B1_Mus2 SINE Alu -9 138 3 9 1827 391 217 168 34 chr1 162897537 162897656 -34297776 - B1_Mur1 SINE Alu 0 149 15 9 1827 22 35 0 0 chr1 162898105 162898134 -34297298 + AT_rich Low_complexity Low_complexity 1 29 0 9 1827 257 305 0 0 chr1 162898725 162898784 -34296648 + B1F SINE Alu 1 59 -90 9 1827 382 195 195 0 chr1 162898952 162899080 -34296352 + B3 SINE B2 4 156 -60 9 1827 23 0 0 0 chr1 162899087 162899110 -34296322 + AT_rich Low_complexity Low_complexity 1 23 0 9 1827 21 0 0 0 chr1 162899905 162899926 -34295506 + AT_rich Low_complexity Low_complexity 1 21 0 9 1827 245 135 19 0 chr1 162899926 162899978 -34295454 + (TA)n Simple_repeat Simple_repeat 2 54 0 9 1827 245 294 55 64 chr1 162900929 162901038 -34294394 - PB1D10 SINE Alu -8 109 2 9 1827 22 0 0 0 chr1 162903363 162903385 -34292047 + AT_rich Low_complexity Low_complexity 1 22 0 9 1827 522 291 26 13 chr1 162905545 162905698 -34289734 + B3A SINE B2 7 161 -37 9 1827 1161 61 0 0 chr1 162905809 162905956 -34289476 + B1_Mus1 SINE Alu 2 148 0 9 1827 550 272 116 64 chr1 162906032 162906205 -34289227 - B3 SINE B2 -34 182 1 9 1827 1083 75 7 0 chr1 162906623 162906769 -34288663 + B1_Mus2 SINE Alu 1 147 0 9 1827 255 31 0 0 chr1 162906845 162906877 -34288555 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1827 1543 228 77 31 chr1 162906903 162907319 -34288113 + Lx5 LINE L1 6585 7055 -3 9 1827 428 243 56 15 chr1 162907335 162907456 -34287976 + B1_Mur2 SINE Alu 2 122 -27 9 1827 267 222 125 0 chr1 162907529 162907601 -34287831 + B1F SINE Alu 67 147 -2 9 1827 352 287 85 8 chr1 162907724 162907854 -34287578 + B1_Mur1 SINE Alu 5 144 -5 9 1827 315 0 0 0 chr1 162907978 162908013 -34287419 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1827 604 117 0 0 chr1 162908223 162908317 -34287115 - RLTR16 LTR ERVK 0 505 412 9 1827 326 127 71 60 chr1 162908390 162908474 -34286958 + ID_B1 SINE B4 139 223 -1 9 1827 246 242 122 24 chr1 162908596 162908719 -34286713 - MER5A1 DNA MER1_type -19 147 13 9 1827 674 251 74 16 chr1 162908997 162909179 -34286253 - B3 SINE B2 -1 194 16 9 1827 980 46 0 22 chr1 162909709 162909843 -34285589 - B1_Mus1 SINE Alu 0 148 18 9 1827 351 217 56 104 chr1 162909720 162909864 -34285568 - B4A SINE B4 -73 219 83 9 1827 593 232 45 108 chr1 162909876 162910098 -34285334 - B3 SINE B2 0 216 9 9 1827 278 118 0 38 chr1 162910484 162910537 -34284895 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 9 1827 323 23 0 22 chr1 162911708 162911753 -34283679 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1827 1410 71 44 0 chr1 162911919 162912102 -34283330 - B2_Mm2 SINE B2 -3 192 2 9 1827 277 220 151 57 chr1 162913608 162913714 -34281718 + PB1D7 SINE Alu 4 119 -1 9 1827 1672 182 138 5 chr1 162913721 162914091 -34281341 + MTD LTR MaLR 1 419 0 9 1827 674 119 0 0 chr1 162914117 162914218 -34281214 + B1_Mus1 SINE Alu 34 134 -14 9 1827 236 249 253 50 chr1 162914225 162914407 -34281025 + ID_B1 SINE B4 1 219 -5 9 1827 2951 60 39 8 chr1 162914677 162915061 -34280371 + MTA_Mm LTR MaLR 1 396 0 9 1827 381 43 0 0 chr1 162915233 162915280 -34280152 + (TC)n Simple_repeat Simple_repeat 1 47 0 9 1827 245 194 25 197 chr1 162915597 162915719 -34279713 + RSINE1 SINE B4 65 165 0 9 1827 647 228 30 37 chr1 162915737 162915901 -34279531 - RSINE1 SINE B4 0 165 3 9 1827 21 0 0 0 chr1 162916261 162916282 -34279150 + AT_rich Low_complexity Low_complexity 1 21 0 9 1827 948 118 14 0 chr1 162916326 162916470 -34278962 + B1_Mur4 SINE Alu 1 146 -4 9 1827 207 0 0 0 chr1 162916536 162916559 -34278873 + (AACTG)n Simple_repeat Simple_repeat 1 23 0 9 1827 195 42 0 0 chr1 162916849 162916873 -34278559 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1827 1140 62 7 0 chr1 162916873 162917017 -34278415 - B1_Mus2 SINE Alu -1 146 2 9 1827 434 275 9 0 chr1 162917129 162917238 -34278194 + ID_B1 SINE B4 82 191 -33 9 1827 302 200 134 24 chr1 162918530 162918612 -34276820 - PB1D7 SINE Alu -29 91 1 9 1827 633 206 8 16 chr1 162918641 162918769 -34276663 + ID_B1 SINE B4 81 207 -17 9 1827 829 151 277 0 chr1 162920046 162920212 -34275220 - B3 SINE B2 -3 213 2 9 1827 582 15 0 0 chr1 162920221 162920288 -34275144 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 9 1827 392 329 13 67 chr1 162920299 162920449 -34274983 - B1F SINE Alu -7 142 1 9 1827 357 347 95 28 chr1 162920569 162920821 -34274611 - B4 SINE B4 -22 270 2 9 1827 487 148 10 19 chr1 162920893 162920918 -34274514 + polypyrimidine Low_complexity Low_complexity 80 103 0 9 1827 1452 44 0 0 chr1 162920918 162921098 -34274334 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1827 487 148 10 19 chr1 162921098 162921175 -34274257 + polypyrimidine Low_complexity Low_complexity 2 79 0 9 1827 354 299 28 18 chr1 162921192 162921301 -34274131 - PB1D10 SINE Alu -7 110 1 9 1827 264 324 0 92 chr1 162922082 162922201 -34273231 + ID4 SINE ID 2 109 -43 9 228 682 239 113 39 chr1 162922345 162922550 -34272882 + B4 SINE B4 10 231 -61 9 1828 607 304 0 0 chr1 162922550 162922711 -34272721 + B3A SINE B2 1 161 -37 9 1828 299 351 0 0 chr1 162922761 162922838 -34272594 + B4 SINE B4 215 291 -1 9 1828 332 298 16 8 chr1 162923975 162924097 -34271335 - MER103 DNA DNA -5 161 39 9 1828 745 208 189 76 chr1 162924104 162924406 -34271026 - ORR1C2 LTR MaLR -48 336 1 9 1828 599 184 79 8 chr1 162924469 162924595 -34270837 - B1_Mur4 SINE Alu -13 137 3 9 1828 363 145 0 0 chr1 162924864 162924875 -34270557 + (A)n Simple_repeat Simple_repeat 1 11 0 9 1828 1226 54 0 0 chr1 162924875 162925022 -34270410 + B1_Mus2 SINE Alu 1 147 0 9 1828 363 145 0 0 chr1 162925022 162925086 -34270346 + (A)n Simple_repeat Simple_repeat 1 64 0 9 1828 203 0 0 36 chr1 162925149 162925177 -34270255 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1828 1136 43 0 0 chr1 162925177 162925315 -34270117 - B1_Mus1 SINE Alu -9 139 2 9 1828 615 140 60 17 chr1 162925860 162925976 -34269456 - B1_Mur1 SINE Alu -8 141 21 9 1828 220 359 23 88 chr1 162926541 162926712 -34268720 + MIR SINE MIR 79 245 -23 9 1828 225 0 0 0 chr1 162927036 162927061 -34268371 + (CAA)n Simple_repeat Simple_repeat 2 26 0 9 1828 570 255 13 54 chr1 162927069 162927218 -34268214 + RSINE1 SINE B4 4 146 -19 9 1828 362 234 62 21 chr1 162928193 162928289 -34267143 + PB1D7 SINE Alu 21 120 0 9 1828 291 337 10 40 chr1 162928291 162928390 -34267042 + B3A SINE B2 1 96 -102 9 1828 1052 88 0 19 chr1 162928415 162928835 -34266597 + (CA)n Simple_repeat Simple_repeat 1 411 0 9 1828 1120 75 0 7 chr1 162928887 162929034 -34266398 + B1_Mus2 SINE Alu 1 146 -1 9 1828 266 72 42 42 chr1 162929034 162929106 -34266326 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 9 1828 347 150 0 62 chr1 162929123 162929187 -34266245 + B1_Mus1 SINE Alu 28 87 -61 9 1828 1073 88 0 0 chr1 162929206 162929343 -34266089 - B1_Mus2 SINE Alu -9 138 2 9 1828 419 171 0 13 chr1 162929346 162929423 -34266009 + B1_Mur4 SINE Alu 75 150 0 9 1828 1219 48 7 0 chr1 162929425 162929571 -34265861 + B1_Mm SINE Alu 1 147 0 9 1828 216 149 0 0 chr1 162929572 162929619 -34265813 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1828 422 228 79 0 chr1 162929709 162929810 -34265622 + PB1D10 SINE Alu 1 109 -8 1 1828 1157 55 0 20 chr1 162930970 162931119 -34264313 - B1_Mm SINE Alu 0 147 2 1 1828 224 236 18 0 chr1 162931141 162931196 -34264236 - B1_Mur3 SINE Alu -1 148 93 1 1828 353 262 0 0 chr1 162931613 162931697 -34263735 + B1F2 SINE Alu 39 122 -27 1 1828 297 75 0 0 chr1 162931752 162931792 -34263640 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1828 252 0 0 0 chr1 162931930 162931958 -34263474 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1828 280 271 17 70 chr1 162932750 162932865 -34262567 + PB1D10 SINE Alu 1 109 -8 1 1828 231 114 0 0 chr1 162933534 162933569 -34261863 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1828 244 159 0 0 chr1 162933787 162933833 -34261599 + ID4_ SINE ID 28 73 -10 1 1828 185 35 0 65 chr1 162933953 162933984 -34261448 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1828 268 287 0 27 chr1 162935219 162935301 -34260131 + ID4_ SINE ID 8 87 -65 1 1828 207 0 0 0 chr1 162935321 162935344 -34260088 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 1 1828 396 0 0 0 chr1 162936541 162936585 -34258847 + (CAAAC)n Simple_repeat Simple_repeat 3 46 0 1 1828 203 239 86 43 chr1 162936707 162936777 -34258655 + MER5B DNA MER1_type 2 74 -104 1 1828 1231 41 7 0 chr1 162937784 162937929 -34257503 - B1_Mus1 SINE Alu 0 148 3 1 1828 253 317 29 9 chr1 162938148 162938253 -34257179 + B1F1 SINE Alu 5 111 -38 1 1828 305 157 0 19 chr1 162940535 162940587 -34254845 + ID4 SINE ID 2 52 -31 1 1828 2129 52 0 22 chr1 162941003 162941278 -34254154 + L1_Mus1 LINE L1 6299 6567 0 1 1828 207 0 0 0 chr1 162941534 162941557 -34253875 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1828 701 139 139 0 chr1 162941807 162941936 -34253496 + B1_Mus1 SINE Alu 2 148 0 1 1828 888 162 123 11 chr1 162942313 162942500 -34252932 - B3 SINE B2 -7 209 2 1 1828 623 197 44 4 chr1 162943039 162943180 -34252252 + B1_Mur2 SINE Alu 2 147 0 1 1828 1158 82 0 0 chr1 162943482 162943629 -34251803 + B1_Mus2 SINE Alu 1 147 0 1 1828 590 0 0 14 chr1 162943630 162943701 -34251731 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 1 1828 478 165 73 55 chr1 162944370 162944479 -34250953 + PB1D9 SINE Alu 2 112 -8 1 1828 1199 113 15 46 chr1 162944699 162944894 -34250538 - B2_Mm2 SINE B2 -6 189 1 1 1828 487 235 22 29 chr1 162945191 162945327 -34250105 - ID_B1 SINE B4 -12 212 78 1 1828 238 245 0 20 chr1 162946666 162946716 -34248716 + B1F2 SINE Alu 2 50 -99 1 1828 236 220 20 0 chr1 162946758 162946808 -34248624 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 1 1828 283 307 0 13 chr1 162950643 162950719 -34244713 - ID4 SINE ID -7 76 2 1 1828 441 238 10 0 chr1 162950880 162950981 -34244451 + ID_B1 SINE B4 123 224 0 1 1828 1330 88 61 0 chr1 162950983 162951164 -34244268 + B2_Mm2 SINE B2 2 193 -2 1 1828 395 216 117 7 chr1 162951295 162951449 -34243983 + MER3 DNA MER1_type 13 183 -26 1 1828 1100 160 118 0 chr1 162951616 162951803 -34243629 - B3 SINE B2 -7 209 1 1 1828 433 288 91 91 chr1 162951932 162952119 -34243313 + B3A SINE B2 5 191 -7 1 1828 637 214 16 0 chr1 162952122 162952248 -34243184 + B1_Mur1 SINE Alu 1 128 -21 1 1828 21 36 0 0 chr1 162952248 162952276 -34243156 + AT_rich Low_complexity Low_complexity 1 28 0 1 1828 1578 42 0 25 chr1 162952279 162952476 -34242956 + B2_Mm1a SINE B2 2 193 0 1 1828 28 29 0 0 chr1 162952496 162952531 -34242901 + AT_rich Low_complexity Low_complexity 1 35 0 1 1828 1106 59 0 7 chr1 162952659 162952796 -34242636 - B1_Mus1 SINE Alu -11 137 2 1 1828 469 180 34 0 chr1 162953085 162953174 -34242258 - PB1D7 SINE Alu -4 116 25 1 1828 389 257 35 60 chr1 162953327 162953443 -34241989 + PB1D7 SINE Alu 1 113 -7 1 1828 1291 20 0 0 chr1 162953977 162954124 -34241308 + B1_Mus2 SINE Alu 1 147 0 1 1828 189 0 0 0 chr1 162954124 162954145 -34241287 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1828 282 64 42 21 chr1 162954371 162954419 -34241013 + B1_Mur2 SINE Alu 96 144 -5 1 1828 547 212 25 17 chr1 162954453 162954573 -34240859 + RSINE1 SINE B4 44 164 -1 1 1828 507 121 12 0 chr1 162954790 162954885 -34240547 + B1_Mus1 SINE Alu 31 126 -21 1 1828 517 266 46 0 chr1 162954964 162955073 -34240359 - B1F SINE Alu -32 117 4 1 1828 295 309 0 106 chr1 162954965 162955088 -34240344 - MT2B LTR ERVL -336 265 156 1 1828 198 103 0 0 chr1 162955174 162955203 -34240229 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1828 368 234 13 0 chr1 162955949 162956026 -34239406 - ID4_ SINE ID -1 82 5 1 1828 436 301 18 55 chr1 162956086 162956251 -34239181 + RSINE1 SINE B4 5 163 -2 1 1828 681 35 0 0 chr1 162956293 162956379 -34239053 + B1_Mus2 SINE Alu 60 145 -2 1 1828 450 207 0 11 chr1 162956573 162956661 -34238771 + B3A SINE B2 1 87 -111 1 1828 421 282 120 0 chr1 162956732 162956849 -34238583 - RSINE1 SINE B4 -31 134 4 1 1828 281 324 67 0 chr1 162957040 162957145 -34238287 + PB1 SINE Alu 6 117 -10 1 1828 529 253 109 49 chr1 162957158 162957258 -34238174 + B3A SINE B2 1 111 -87 1 1828 1251 187 141 18 chr1 162957258 162957386 -34238046 - ORR1C1 LTR MaLR 0 378 247 1 1828 243 0 0 0 chr1 162957386 162957413 -34238019 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 1 1828 1251 187 141 18 chr1 162957413 162957617 -34237815 - ORR1C1 LTR MaLR -132 246 6 1 1828 529 253 109 49 chr1 162957617 162957699 -34237733 + B3A SINE B2 112 194 -4 1 1828 418 276 73 134 chr1 162957758 162957876 -34237556 + B4 SINE B4 4 98 -194 1 1828 1222 48 0 0 chr1 162957876 162958023 -34237409 - B1_Mus2 SINE Alu 0 147 1 1 1828 418 276 73 134 chr1 162958023 162958151 -34237281 + B4 SINE B4 99 235 -57 1 1828 737 115 41 8 chr1 162958185 162958308 -34237124 - B1_Mus2 SINE Alu 0 147 21 1 1828 243 0 0 0 chr1 162958368 162958395 -34237037 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1828 1176 55 14 0 chr1 162958518 162958663 -34236769 + B1_Mur4 SINE Alu 4 150 0 1 1828 303 49 0 0 chr1 162958663 162958704 -34236728 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1828 464 277 126 0 chr1 162958706 162958825 -34236607 - B1F1 SINE Alu -13 136 3 1 1828 728 197 173 11 chr1 162958908 162959093 -34236339 + B3 SINE B2 2 216 0 1 1828 216 0 0 0 chr1 162959210 162959234 -34236198 + (CTA)n Simple_repeat Simple_repeat 2 25 0 1 1828 346 205 172 12 chr1 162959452 162959566 -34235866 - B3 SINE B2 -56 139 6 1 1828 478 253 6 82 chr1 162960040 162960199 -34235233 - B1F1 SINE Alu 0 149 3 1 1828 458 257 35 0 chr1 162960537 162960650 -34234782 - RSINE1 SINE B4 -28 137 21 1 1828 283 284 102 87 chr1 162960684 162960729 -34234703 + B1F SINE Alu 21 64 -85 1 1828 1194 48 0 7 chr1 162960729 162960877 -34234555 + B1_Mus2 SINE Alu 1 147 0 1 1828 283 284 102 87 chr1 162960877 162960958 -34234474 + B1F SINE Alu 65 149 0 1 1828 490 162 254 8 chr1 162960993 162961111 -34234321 + B1_Mm SINE Alu 1 147 0 1 1828 273 246 0 42 chr1 162961132 162961204 -34234228 + B4A SINE B4 84 152 -140 1 1828 482 173 10 0 chr1 162961144 162961243 -34234189 + B1F SINE Alu 10 114 -6 1 1828 230 303 118 43 chr1 162962996 162963089 -34232343 + PB1D10 SINE Alu 18 117 0 1 1828 250 247 163 12 chr1 162963151 162963237 -34232195 - PB1D10 SINE Alu -16 101 3 1 1828 412 226 117 10 chr1 162963450 162963553 -34231879 - B1_Mur3 SINE Alu -11 138 25 1 1828 496 206 63 49 chr1 162963568 162963711 -34231721 - B1_Mur2 SINE Alu -1 148 4 1 1828 21 0 0 0 chr1 162964674 162964695 -34230737 + GC_rich Low_complexity Low_complexity 1 21 0 1 1828 1118 79 23 0 chr1 162968809 162968981 -34226451 - B2_Mm1a SINE B2 -3 190 2 1 1828 267 109 65 0 chr1 162969113 162969159 -34226273 - B2_Mm1t SINE B2 -144 49 1 1 1828 238 169 125 38 chr1 162969206 162969286 -34226146 - RLTR14 LTR ERV1 -246 136 50 1 1828 570 155 18 9 chr1 162970631 162970742 -34224690 + B1_Mur3 SINE Alu 18 129 -20 1 1828 1042 57 34 41 chr1 162970823 162970969 -34224463 + B1_Mus1 SINE Alu 4 148 0 1 1828 697 166 247 6 chr1 162971039 162971221 -34224211 + ORR1C1 LTR MaLR 153 378 0 1 1828 236 276 75 82 chr1 162971239 162971385 -34224047 - MIRc SINE MIR -32 236 92 1 1828 699 141 66 8 chr1 162972146 162972268 -34223164 - B1_Mus2 SINE Alu -10 137 9 1 1828 303 180 256 11 chr1 162972304 162972394 -34223038 - PB1D9 SINE Alu 0 120 9 1 1828 367 252 22 131 chr1 162972360 162972497 -34222935 - ID_B1 SINE B4 -101 123 2 1 1828 237 65 0 0 chr1 162972518 162972549 -34222883 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1828 238 313 60 0 chr1 162972633 162972700 -34222732 - B3A SINE B2 -78 120 50 1 1828 1541 174 123 21 chr1 162972702 162973042 -34222390 + Lx7 LINE L1 7056 7430 -266 1 1828 360 148 0 0 chr1 162973089 162973150 -34222282 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 1 1828 259 212 71 0 chr1 162973150 162973235 -34222197 + Lx7 LINE L1 7585 7675 -21 1 1828 733 233 209 0 chr1 162973275 162973447 -34221985 - B3 SINE B2 -8 208 1 1 1828 405 233 32 32 chr1 162973565 162973658 -34221774 - B1_Mur1 SINE Alu -19 130 38 1 1828 228 246 58 0 chr1 162974013 162974082 -34221350 + PB1D10 SINE Alu 22 94 -23 1 1828 358 276 71 10 chr1 162974203 162974302 -34221130 - PB1D10 SINE Alu -12 105 1 1 1828 293 192 140 10 chr1 162974305 162974405 -34221027 + MIR SINE MIR 79 191 -71 1 1828 1250 27 0 0 chr1 162974456 162974602 -34220830 - B1_Mus2 SINE Alu 0 147 2 1 1828 482 224 25 33 chr1 162974607 162974727 -34220705 - PB1D7 SINE Alu -1 119 1 1 1828 1260 27 0 0 chr1 162974842 162974989 -34220443 - B1_Mus2 SINE Alu 0 147 1 1 1828 948 102 0 14 chr1 162975939 162976079 -34219353 - B1_Mus1 SINE Alu -1 147 10 1 1828 381 209 85 9 chr1 162975984 162976090 -34219342 - B4A SINE B4 -98 194 81 1 1828 375 303 64 0 chr1 162976094 162976203 -34219229 - PB1 SINE Alu -9 118 3 1 1828 555 263 124 21 chr1 162976270 162976464 -34218968 + B4A SINE B4 74 287 -5 1 1828 203 116 23 23 chr1 162976469 162976513 -34218919 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1828 254 250 0 0 chr1 162976567 162976623 -34218809 - RSINE1 SINE B4 -107 58 3 1 1828 250 246 11 0 chr1 162976648 162976713 -34218719 - B1F SINE Alu 0 149 52 1 1828 1637 148 14 11 chr1 162977167 162977448 -34217984 - MTC LTR MaLR 0 421 140 1 1828 326 278 21 76 chr1 162977538 162977682 -34217750 + B1F1 SINE Alu 14 149 0 1 1828 621 27 0 0 chr1 162977875 162977950 -34217482 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1828 234 245 41 0 chr1 162977991 162978040 -34217392 - B1F1 SINE Alu -96 53 3 1 1828 295 227 13 51 chr1 162978169 162978248 -34217184 - ID2 SINE ID 0 83 8 1 1828 860 95 71 0 chr1 162978302 162978428 -34217004 + B1_Mus1 SINE Alu 1 135 -13 1 1828 1676 31 0 0 chr1 162978428 162978620 -34216812 - B2_Mm1a SINE B2 0 193 2 1 1828 260 327 64 0 chr1 162978798 162978908 -34216524 + PB1D10 SINE Alu 1 117 0 1 1828 354 275 73 0 chr1 162979118 162979227 -34216205 - PB1D10 SINE Alu 0 117 1 1 1828 1189 27 7 27 chr1 162979539 162979689 -34215743 + B1_Mus2 SINE Alu 1 147 0 1 1828 347 263 25 34 chr1 162979814 162979916 -34215516 + B3 SINE B2 62 165 -51 1 1828 546 91 0 0 chr1 162979916 162979993 -34215439 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1828 347 263 25 34 chr1 162979993 162980008 -34215424 + B3 SINE B2 166 178 -38 1 1828 375 225 101 0 chr1 162980499 162980588 -34214844 - B1_Mur1 SINE Alu -5 144 47 1 1828 270 287 154 17 chr1 162980824 162980941 -34214491 + ID_B1 SINE B4 79 211 -13 1 1828 23 33 0 0 chr1 162980971 162981001 -34214431 + AT_rich Low_complexity Low_complexity 1 30 0 1 1828 682 208 0 153 chr1 162981035 162981107 -34214325 - B1_Mur1 SINE Alu 0 149 87 1 1828 1214 41 0 7 chr1 162981107 162981254 -34214178 + B1_Mus2 SINE Alu 2 147 0 1 1828 682 208 0 153 chr1 162981254 162981357 -34214075 - B1_Mur1 SINE Alu -63 86 1 1 1828 515 317 52 22 chr1 162981739 162982010 -34213422 - B4A SINE B4 -12 280 2 1 1828 21 36 0 0 chr1 162982019 162982047 -34213385 + AT_rich Low_complexity Low_complexity 1 28 0 1 1828 378 291 18 26 chr1 162982069 162982182 -34213250 - RSINE1 SINE B4 -5 160 49 1 1828 397 256 64 116 chr1 162982193 162982365 -34213067 - RSINE1 SINE B4 0 165 3 1 1828 573 36 9 0 chr1 162982366 162982445 -34212987 - B1_Mm SINE Alu -12 108 23 1 1828 294 232 181 83 chr1 162982445 162982559 -34212873 - ID_B1 SINE B4 -12 212 1 1 1828 441 181 81 14 chr1 162982559 162982616 -34212816 + B4A SINE B4 78 159 -133 1 1828 960 73 0 7 chr1 162982827 162982950 -34212482 + B1_Mm SINE Alu 12 134 -13 1 1828 234 0 0 0 chr1 162982950 162982976 -34212456 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1828 960 73 0 7 chr1 162982976 162982989 -34212443 + B1_Mm SINE Alu 135 147 0 1 1828 193 93 44 44 chr1 162983250 162983295 -34212137 + CT-rich Low_complexity Low_complexity 3 47 0 1 1828 300 20 61 0 chr1 162983300 162983349 -34212083 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1828 364 163 161 11 chr1 162983349 162983436 -34211996 - RSINE1 SINE B4 -25 140 41 1 1828 789 161 14 0 chr1 162983472 162983615 -34211817 - B1_Mus2 SINE Alu 0 147 3 1 1828 291 283 42 32 chr1 162983642 162983737 -34211695 + B1F2 SINE Alu 10 105 -44 1 1828 522 0 0 0 chr1 162983752 162983810 -34211622 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1828 336 143 0 0 chr1 162983865 162983921 -34211511 + (CACCAT)n Simple_repeat Simple_repeat 5 60 0 1 1828 219 330 62 9 chr1 162984450 162984563 -34210869 - MIRc SINE MIR -144 124 6 1 1828 1048 199 61 0 chr1 162984683 162984879 -34210553 - B3 SINE B2 -8 208 1 1 1828 949 139 14 0 chr1 162984953 162985097 -34210335 - B1_Mus2 SINE Alu -1 146 1 1 1828 247 282 102 91 chr1 162985102 162985289 -34210143 - B3A SINE B2 0 198 10 1 1828 553 253 46 20 chr1 162985140 162985293 -34210139 - RSINE1 SINE B4 -2 163 7 1 1828 515 200 48 0 chr1 162985461 162985566 -34209866 + B3A SINE B2 9 118 -80 1 1828 494 162 0 66 chr1 162985643 162985749 -34209683 + B1_Mur1 SINE Alu 33 131 -18 1 1828 1345 261 57 39 chr1 162985793 162986423 -34209009 + L1MA5 LINE L1 5477 6083 -1613 1 1828 1410 73 17 0 chr1 162986744 162986921 -34208511 + B2_Mm2 SINE B2 1 180 -15 1 1828 1223 41 0 0 chr1 162986982 162987127 -34208305 - B1_Mus2 SINE Alu -2 145 1 1 1828 543 278 25 31 chr1 162987314 162987474 -34207958 - RSINE1 SINE B4 -6 159 1 1 1828 215 119 0 63 chr1 162987731 162987794 -34207638 + A-rich Low_complexity Low_complexity 1 59 0 1 1828 456 193 62 27 chr1 162987811 162987923 -34207509 + PB1D10 SINE Alu 1 116 -1 1 1828 513 196 10 0 chr1 162988084 162988186 -34207246 - PB1D9 SINE Alu -5 115 13 1 1828 418 265 92 74 chr1 162988210 162988373 -34207059 - B3A SINE B2 -32 166 1 1 1828 222 37 0 0 chr1 162988491 162988518 -34206914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1828 1100 79 0 0 chr1 162988518 162988657 -34206775 - B1_Mus1 SINE Alu -9 139 1 1 1828 397 319 18 0 chr1 162988845 162988958 -34206474 - PB1D10 SINE Alu -2 115 1 1 1828 239 269 115 0 chr1 162989624 162989728 -34205704 - B3A SINE B2 0 216 101 1 1828 183 42 0 0 chr1 162989777 162989801 -34205631 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1828 782 53 211 0 chr1 162989801 162989915 -34205517 - B1_Mus1 SINE Alu -9 139 2 1 1828 211 231 96 0 chr1 162990594 162990646 -34204786 + PB1D7 SINE Alu 2 58 -62 1 1828 384 276 156 25 chr1 162991095 162991255 -34204177 - B3A SINE B2 -16 182 2 1 1828 935 240 93 44 chr1 162991535 162991835 -34203597 - MTE2a LTR MaLR -3 418 73 1 1828 929 137 14 14 chr1 162991835 162991983 -34203449 + B1_Mur4 SINE Alu 3 150 0 1 1828 346 248 40 0 chr1 162992052 162992153 -34203279 - MTE2a LTR MaLR -314 105 1 1 1828 911 277 25 36 chr1 162992153 162992428 -34203004 + B4 SINE B4 21 292 0 1 1828 854 170 7 0 chr1 162992474 162992609 -34202823 + B1_Mur2 SINE Alu 3 138 -11 1 1828 429 267 29 0 chr1 162993675 162993780 -34201652 - PB1D10 SINE Alu -5 112 5 1 1828 180 71 0 0 chr1 162993797 162993814 -34201618 + (TTAA)n Simple_repeat Simple_repeat 4 20 0 1 1828 1188 63 0 0 chr1 162993814 162993957 -34201475 - B1_Mus1 SINE Alu -5 143 1 1 1828 180 71 0 0 chr1 162993957 162993967 -34201465 + (TTAA)n Simple_repeat Simple_repeat 2 11 0 1 1828 698 161 92 8 chr1 162993967 162994098 -34201334 - B1_Mur2 SINE Alu -7 142 1 1 1828 542 250 103 0 chr1 162994168 162994304 -34201128 - RSINE1 SINE B4 0 165 16 1 1828 229 256 0 0 chr1 162994348 162994391 -34201041 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1828 396 0 0 0 chr1 162994391 162994435 -34200997 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1828 475 250 22 43 chr1 162994435 162994573 -34200859 - ID_B1 SINE B4 -12 212 78 1 1828 1284 20 0 0 chr1 162994752 162994899 -34200533 + B1_Mm SINE Alu 1 147 0 1 1828 225 0 0 0 chr1 162994899 162994924 -34200508 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1828 414 255 10 0 chr1 162994924 162995022 -34200410 - RSINE1 SINE B4 -40 125 27 1 1828 512 215 0 9 chr1 162995107 162995215 -34200217 - B3 SINE B2 -108 108 2 1 1828 301 325 70 0 chr1 162995592 162995706 -34199726 - PB1 SINE Alu -2 125 4 1 1828 528 222 137 0 chr1 162995814 162995931 -34199501 - B1_Mur1 SINE Alu -6 143 11 1 1828 1161 62 7 0 chr1 162995931 162996077 -34199355 + B1_Mus1 SINE Alu 2 148 0 1 1828 612 206 67 45 chr1 162996361 162996539 -34198893 - B3A SINE B2 -16 182 1 1 1828 272 152 13 120 chr1 162997063 162997138 -34198294 + MT2B LTR ERVL 173 239 -362 1 1828 602 194 63 16 chr1 162997071 162997197 -34198235 + B1_Mur1 SINE Alu 18 149 0 1 1828 1484 73 16 5 chr1 162997315 162997507 -34197925 + B2_Mm2 SINE B2 2 195 0 1 1828 1310 90 39 11 chr1 162997786 162997966 -34197466 - B2_Mm2 SINE B2 -9 186 2 1 1828 1490 63 5 11 chr1 162997966 162998157 -34197275 - B2_Mm1a SINE B2 -2 191 2 1 1828 1027 229 24 9 chr1 162998198 162998410 -34197022 + B3 SINE B2 2 216 0 1 1828 672 221 6 25 chr1 162999481 162999639 -34195793 - RSINE1 SINE B4 -7 158 4 1 1828 498 163 0 11 chr1 163001927 163002020 -34193412 + PB1D7 SINE Alu 29 120 0 1 1828 462 248 50 33 chr1 163002789 163002910 -34192522 - RSINE1 SINE B4 0 165 43 2 1828 198 0 0 0 chr1 163003095 163003117 -34192315 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1828 441 0 0 0 chr1 163003118 163003167 -34192265 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1828 1220 105 6 6 chr1 163003344 163003526 -34191906 - B2_Mm2 SINE B2 -12 183 2 5 1828 30 0 0 0 chr1 163004593 163004623 -34190809 + AT_rich Low_complexity Low_complexity 1 30 0 6 1828 1375 84 17 6 chr1 163004654 163004833 -34190599 - B2_Mm2 SINE B2 -14 181 1 7 1828 2584 135 42 9 chr1 163005071 163005504 -34189928 - RMER6B LTR ERVK 0 461 15 8 1828 541 219 168 0 chr1 163005786 163005923 -34189509 - B3 SINE B2 -10 206 47 9 1828 180 0 0 0 chr1 163006075 163006095 -34189337 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1828 405 0 0 0 chr1 163006095 163006139 -34189293 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1828 206 32 32 0 chr1 163006338 163006369 -34189063 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1828 569 243 33 40 chr1 163006388 163006538 -34188894 - B1F2 SINE Alu 0 149 1 1 1828 267 278 138 36 chr1 163006754 163006892 -34188540 - L1MA5 LINE L1 -362 5938 5787 1 1828 201 147 0 0 chr1 163006903 163006937 -34188495 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 1 1828 866 147 7 0 chr1 163006962 163007098 -34188334 - B1_Mur4 SINE Alu 0 150 14 1 1828 233 236 169 54 chr1 163007109 163007257 -34188175 - L1_Mur2 LINE L1 -209 5668 5504 1 1828 2207 130 35 0 chr1 163007345 163007660 -34187772 - ORR1A3 LTR MaLR 0 326 1 1 1828 372 317 152 38 chr1 163007913 163008202 -34187230 - L2a LINE L2 -69 3357 3036 1 1828 357 43 0 0 chr1 163008728 163008775 -34186657 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1828 180 125 0 0 chr1 163008775 163008806 -34186626 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1828 444 318 69 8 chr1 163008806 163008936 -34186496 - RSINE1 SINE B4 -24 141 4 2 1828 965 153 34 14 chr1 163008975 163009121 -34186311 - B1_Mur4 SINE Alu -1 149 1 2 1828 222 37 0 0 chr1 163009187 163009214 -34186218 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1828 492 265 37 37 chr1 163009256 163009417 -34186015 + RSINE1 SINE B4 5 165 0 2 1828 1393 67 49 27 chr1 163009457 163009642 -34185790 - B2_Mm2 SINE B2 -6 189 1 2 1828 1340 217 177 19 chr1 163009802 163010164 -34185268 - MTD LTR MaLR 0 419 1 2 1828 399 210 244 0 chr1 163010346 163010465 -34184967 - B1F2 SINE Alu 0 149 2 2 1828 438 284 26 0 chr1 163010515 163010631 -34184801 - PB1D9 SINE Alu -1 119 1 2 1828 24 0 0 0 chr1 163010850 163010874 -34184558 + AT_rich Low_complexity Low_complexity 1 24 0 3 1828 1119 216 29 5 chr1 163011021 163011226 -34184206 - B3 SINE B2 -5 211 2 3 1828 195 42 0 0 chr1 163011234 163011258 -34184174 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1828 1284 288 183 50 chr1 163012031 163012758 -34182674 - Lx8 LINE L1 -16 7457 6634 3 1828 213 39 0 0 chr1 163012771 163012797 -34182635 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 3 1828 471 284 94 0 chr1 163012823 163012950 -34182482 - ID_B1 SINE B4 -6 218 80 3 1828 207 0 0 0 chr1 163013639 163013662 -34181770 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 1828 1200 41 0 81 chr1 163013683 163013844 -34181588 - B1_Mus1 SINE Alu 0 148 1 3 1828 1125 188 28 37 chr1 163014233 163014448 -34180984 - B3 SINE B2 -3 213 1 3 1828 302 242 0 43 chr1 163014579 163014648 -34180784 - ID4_ SINE ID -1 82 17 3 1828 310 238 176 7 chr1 163014665 163014881 -34180551 - L1MA5 LINE L1 -23 6277 6008 4 1828 597 221 107 0 chr1 163014917 163015039 -34180393 - ID_B1 SINE B4 0 224 90 4 1828 323 231 0 0 chr1 163015044 163015109 -34180323 - L1MA5 LINE L1 -350 5950 5886 4 1828 772 245 45 0 chr1 163015237 163015392 -34180040 + RSINE1 SINE B4 2 163 -2 4 1828 566 214 0 10 chr1 163015564 163015668 -34179764 + ID_B1 SINE B4 115 217 -7 4 1828 692 225 14 42 chr1 163015672 163015816 -34179616 + B3A SINE B2 2 141 -57 4 1828 699 216 73 39 chr1 163015836 163016014 -34179418 + B3A SINE B2 15 198 0 4 1828 2932 120 60 17 chr1 163016480 163016998 -34178434 - L1_Mur3 LINE L1 -6384 1328 789 4 1828 662 153 0 106 chr1 163016996 163017128 -34178304 + L1_Mur3 LINE L1 2910 3027 -2853 4 1828 2331 48 30 0 chr1 163017128 163017423 -34178009 - IAPLTR2b LTR ERVK 0 327 24 4 1828 1629 120 99 26 chr1 163017430 163017773 -34177659 + L1_Mur3 LINE L1 3021 3388 -2492 4 1828 616 207 26 0 chr1 163018290 163018406 -34177026 + RSINE1 SINE B4 2 120 -45 4 1828 375 23 0 0 chr1 163018436 163018480 -34176952 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1828 680 269 61 70 chr1 163019532 163019632 -34175800 - B3A SINE B2 -1 215 110 5 1828 1390 156 4 85 chr1 163019632 163019878 -34175554 + URR1A DNA MER1_type 1 226 0 5 1828 680 261 56 73 chr1 163019878 163019985 -34175447 - B3A SINE B2 -89 109 6 5 1828 229 155 0 101 chr1 163020237 163020316 -34175116 + A-rich Low_complexity Low_complexity 2 72 0 5 1828 217 349 0 45 chr1 163020992 163021058 -34174374 - PB1D10 SINE Alu -54 63 1 5 1828 335 266 53 0 chr1 163021100 163021194 -34174238 - PB1D7 SINE Alu -21 99 1 5 1828 875 278 28 31 chr1 163021269 163021559 -34173873 - B4 SINE B4 -2 290 2 5 1828 262 314 182 16 chr1 163021731 163021857 -34173575 + B1F SINE Alu 3 149 0 5 1828 189 0 0 0 chr1 163021902 163021923 -34173509 + (CCA)n Simple_repeat Simple_repeat 2 22 0 5 1828 724 212 44 0 chr1 163021925 163022062 -34173370 + B1F SINE Alu 7 149 0 5 1828 896 153 14 27 chr1 163022087 163022235 -34173197 + B1_Mus2 SINE Alu 2 147 0 6 1828 308 221 118 0 chr1 163022928 163022996 -34172436 - ID4_ SINE ID -6 77 2 6 1828 315 0 0 0 chr1 163023223 163023258 -34172174 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 6 1828 1333 34 0 0 chr1 163023438 163023585 -34171847 + B1_Mus2 SINE Alu 1 147 0 6 1828 1525 75 5 0 chr1 163024291 163024479 -34170953 - B2_Mm1t SINE B2 -4 189 1 6 1828 2367 68 29 15 chr1 163025982 163026348 -34169084 - L1_Mus1 LINE L1 -1 6637 6251 6 1828 601 201 65 29 chr1 163026559 163026697 -34168735 - B1F1 SINE Alu 0 149 7 6 1828 320 301 73 53 chr1 163026568 163026719 -34168713 - B4 SINE B4 -72 220 67 6 1828 1001 113 275 6 chr1 163026799 163026977 -34168455 + URR1A DNA MER1_type 1 226 0 6 1828 201 182 0 0 chr1 163027138 163027171 -34168261 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1828 318 235 15 118 chr1 163027173 163027308 -34168124 - B3 SINE B2 -28 188 68 7 1828 305 281 84 28 chr1 163027395 163027567 -34167865 - B3 SINE B2 -20 178 1 7 1828 284 245 192 37 chr1 163027708 163027750 -34167682 + Lx8 LINE L1 7286 7327 -146 7 1828 3613 33 5 0 chr1 163027750 163028144 -34167288 + MTA_Mm LTR MaLR 1 396 0 7 1828 284 245 192 37 chr1 163028144 163028262 -34167170 + Lx8 LINE L1 7328 7471 -2 7 1828 246 296 111 10 chr1 163028182 163028281 -34167151 + RMER1C Other Other 1229 1337 -5 7 1828 969 215 173 35 chr1 163028670 163029098 -34166334 + L1MA8 LINE L1 5800 6286 -5 7 1828 258 32 0 0 chr1 163029958 163029989 -34165443 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1828 237 320 0 0 chr1 163030018 163030068 -34165364 + ID4_ SINE ID 5 54 -29 7 1828 436 277 8 59 chr1 163030241 163030360 -34165072 - PB1D10 SINE Alu 0 117 5 7 1828 283 212 47 59 chr1 163030816 163030850 -34164582 + B2_Mm1t SINE B2 19 51 -142 7 1828 1383 96 22 0 chr1 163030850 163031028 -34164404 + B2_Mm2 SINE B2 1 182 -13 8 1828 283 212 47 59 chr1 163031028 163031078 -34164354 + B2_Mm1t SINE B2 52 101 -92 7 1828 237 163 0 0 chr1 163031103 163031152 -34164280 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 8 1828 284 331 141 59 chr1 163031173 163031443 -34163989 - L2c LINE L2 -186 3201 2910 8 1828 578 240 12 68 chr1 163031862 163032023 -34163409 + MLT1B LTR MaLR 239 390 0 8 1828 513 257 81 3 chr1 163032895 163033026 -34162406 + B1F SINE Alu 12 149 0 8 1828 220 102 40 20 chr1 163033026 163033076 -34162356 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1828 324 293 103 0 chr1 163034145 163034261 -34161171 - MIR SINE MIR -43 219 92 8 1828 389 272 38 28 chr1 163034577 163034683 -34160749 - RSINE1 SINE B4 -57 108 2 8 1828 219 216 0 0 chr1 163034990 163035027 -34160405 + B1_Mus1 SINE Alu 1 37 -111 8 1828 23 33 0 0 chr1 163035224 163035254 -34160178 + AT_rich Low_complexity Low_complexity 1 30 0 8 1828 1283 200 0 9 chr1 163035950 163036167 -34159265 + B3 SINE B2 2 216 0 9 1828 683 309 119 0 chr1 163036176 163036385 -34159047 + MER44A DNA MER2_type 2 227 -112 9 1828 441 0 0 0 chr1 163036385 163036434 -34158998 + (TA)n Simple_repeat Simple_repeat 1 49 0 9 1828 683 309 119 0 chr1 163036434 163036518 -34158914 + MER44A DNA MER2_type 228 329 -10 9 1828 180 97 0 0 chr1 163037065 163037096 -34158336 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 9 1828 23 33 0 0 chr1 163037233 163037263 -34158169 + AT_rich Low_complexity Low_complexity 1 30 0 9 1828 229 262 16 16 chr1 163037701 163037763 -34157669 + B4 SINE B4 85 146 -146 9 1828 225 0 0 0 chr1 163037783 163037808 -34157624 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1828 233 293 31 135 chr1 163037862 163037932 -34157500 - L1MC LINE L1 -2370 5512 5451 9 1828 447 264 28 19 chr1 163037932 163038040 -34157392 + PB1D10 SINE Alu 3 111 -6 9 1828 233 293 31 135 chr1 163038040 163038162 -34157270 - L1MC LINE L1 -2432 5450 5340 9 1828 324 102 0 0 chr1 163038794 163038843 -34156589 + (TCC)n Simple_repeat Simple_repeat 1 49 0 9 1828 22 0 0 0 chr1 163038957 163038979 -34156453 + AT_rich Low_complexity Low_complexity 1 22 0 1 1828 223 200 40 0 chr1 163038998 163039048 -34156384 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1828 949 257 64 57 chr1 163039062 163039343 -34156089 - B4A SINE B4 -8 284 2 1 1828 792 144 76 0 chr1 163040672 163040804 -34154628 - B1_Mus1 SINE Alu -1 147 6 1 1828 439 287 70 49 chr1 163040676 163040819 -34154613 - B4 SINE B4 -71 221 76 1 1828 7654 108 31 10 chr1 163040872 163041962 -34153470 + Lx3C LINE L1 5862 6974 -2 1 1828 23 68 0 0 chr1 163042004 163042048 -34153384 + AT_rich Low_complexity Low_complexity 1 44 0 1 1828 23 54 0 0 chr1 163042126 163042163 -34153269 + AT_rich Low_complexity Low_complexity 1 37 0 1 1828 449 237 65 97 chr1 163042182 163042336 -34153096 - RSINE1 SINE B4 -3 162 14 1 1828 790 199 7 21 chr1 163042395 163042539 -34152893 - B1_Mur2 SINE Alu -6 143 2 1 1828 398 280 80 0 chr1 163042797 163042897 -34152535 + PB1D10 SINE Alu 1 108 -9 1 1828 381 261 84 136 chr1 163042923 163043136 -34152296 + Kanga11a DNA Tc2 620 821 -149 1 1828 470 225 0 43 chr1 163043560 163043653 -34151779 - B1F SINE Alu -24 125 37 1 1828 25 75 0 0 chr1 163043800 163043853 -34151579 + AT_rich Low_complexity Low_complexity 1 53 0 1 1828 1453 145 30 8 chr1 163043862 163044098 -34151334 + ORR1B2 LTR MaLR 1 241 -126 1 1828 416 285 12 143 chr1 163044094 163044188 -34151244 + ID SINE ID 11 82 -142 1 1828 270 321 44 9 chr1 163044188 163044301 -34151131 + PB1D10 SINE Alu 1 117 0 1 1828 315 256 70 92 chr1 163044326 163044468 -34150964 - B3A SINE B2 -1 197 59 1 1828 364 252 126 0 chr1 163045005 163045108 -34150324 + B3 SINE B2 101 216 0 1 1828 21 36 0 0 chr1 163045669 163045697 -34149735 + AT_rich Low_complexity Low_complexity 1 28 0 1 1828 275 315 47 34 chr1 163045751 163045899 -34149533 - RSINE1 SINE B4 -14 151 2 1 1828 229 269 128 46 chr1 163046236 163046345 -34149087 + PB1D9 SINE Alu 1 118 -2 1 1828 929 253 113 12 chr1 163046613 163046861 -34148571 + MTE2b LTR MaLR 32 304 -75 1 1828 410 150 62 0 chr1 163046906 163046986 -34148446 + L1MA10 LINE L1 6239 6323 -11 1 1828 666 273 33 28 chr1 163047192 163047373 -34148059 + B3A SINE B2 1 182 -16 1 1828 291 141 309 29 chr1 163047872 163048011 -34147421 + Lx2B LINE L1 6822 6999 -1 1 1828 3238 19 0 18 chr1 163048275 163048597 -34146835 - L1_Mm LINE L1 -281 5602 5287 1 1828 3789 15 0 0 chr1 163048597 163048993 -34146439 - MTA_Mm LTR MaLR 0 396 1 1 1828 3238 19 0 18 chr1 163048993 163049052 -34146380 - L1_Mm LINE L1 -597 5286 5228 1 1828 8849 29 1 0 chr1 163049052 163050024 -34145408 + L1Md_T LINE L1 5610 6582 0 1 1828 254 303 30 50 chr1 163050024 163050069 -34145363 - L1M4 LINE L1 -890 5256 5209 1 1828 348 226 14 76 chr1 163050180 163050324 -34145108 - L1_Mur3 LINE L1 -2557 3323 3189 1 1828 2325 245 113 18 chr1 163050332 163050960 -34144472 + Lx6 LINE L1 6758 7445 -15 1 1828 583 222 156 0 chr1 163051040 163051220 -34144212 + Lx9 LINE L1 7430 7637 -7 1 1828 1223 55 7 0 chr1 163051257 163051403 -34144029 + B1_Mus2 SINE Alu 1 147 0 1 1828 945 221 51 0 chr1 163051532 163051727 -34143705 - B3 SINE B2 -3 213 9 1 1828 31 44 0 0 chr1 163051903 163051948 -34143484 + AT_rich Low_complexity Low_complexity 1 45 0 1 1828 215 256 256 0 chr1 163052049 163052127 -34143305 + PB1D10 SINE Alu 6 103 -14 1 1828 416 253 12 0 chr1 163052311 163052394 -34143038 - PB1D10 SINE Alu -21 96 13 1 1828 197 334 219 41 chr1 163052569 163052909 -34142523 + L2a LINE L2 2502 2884 -535 1 1828 342 0 0 0 chr1 163052909 163052947 -34142485 + (CTTAG)n Simple_repeat Simple_repeat 5 42 0 1 1828 300 339 212 29 chr1 163052947 163053230 -34142202 + L2a LINE L2 2885 3237 -189 1 228 1239 147 0 11 chr1 163053513 163053699 -34141733 - MTC LTR MaLR 0 421 238 1 1829 233 167 48 0 chr1 163054855 163054897 -34140535 + ID4_ SINE ID 34 77 -6 1 1829 186 43 0 0 chr1 163055020 163055043 -34140389 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 1829 808 184 65 81 chr1 163055135 163055354 -34140078 - B3A SINE B2 0 216 1 1 1829 536 293 52 8 chr1 163055655 163055789 -34139643 - ID_B1 SINE B4 -5 219 80 1 1829 231 130 0 0 chr1 163056059 163056105 -34139327 - RMER1A Other Other -5 1025 980 1 1829 2966 176 118 31 chr1 163056106 163056131 -34139301 - RMER1B Other Other -3 1063 1030 1 1829 1337 20 0 7 chr1 163056131 163056278 -34139154 - B1_Mm SINE Alu 0 147 2 1 1829 3005 189 98 79 chr1 163056278 163057279 -34138153 - RMER1B Other Other -38 1028 47 1 1829 674 263 77 60 chr1 163057276 163057537 -34137895 - L1MA5 LINE L1 -396 5904 5643 1 1829 303 71 0 0 chr1 163057537 163057579 -34137853 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1829 674 263 77 60 chr1 163057579 163057653 -34137779 - L1MA5 LINE L1 -658 5642 5563 1 1829 423 234 5 14 chr1 163057682 163057786 -34137646 + L1MA5 LINE L1 6185 6281 -16 1 1829 769 202 201 6 chr1 163057786 163057965 -34137467 + B3 SINE B2 1 214 -2 1 1829 227 241 33 100 chr1 163057965 163057980 -34137452 + L1MA5 LINE L1 6282 6296 -1 1 1829 673 272 83 0 chr1 163058606 163058786 -34136646 + Lx7 LINE L1 7127 7321 -375 1 1829 471 18 0 0 chr1 163058787 163058843 -34136589 + (TGG)n Simple_repeat Simple_repeat 1 56 0 1 1829 252 0 0 0 chr1 163058843 163058871 -34136561 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1829 41 48 0 0 chr1 163059145 163059207 -34136225 + AT_rich Low_complexity Low_complexity 1 62 0 1 1829 214 274 0 16 chr1 163059516 163059579 -34135853 - B1F2 SINE Alu -86 63 2 1 1829 661 227 21 7 chr1 163060150 163060292 -34135140 + B1_Mur2 SINE Alu 5 148 -1 1 1829 274 261 224 7 chr1 163062369 163062512 -34132920 - L1M5 LINE L1 -688 5552 5379 1 1829 349 200 35 23 chr1 163063420 163063507 -34131925 + MLT1A1 LTR MaLR 307 394 -14 1 1829 290 292 0 15 chr1 163063653 163063736 -34131696 + ID SINE ID 1 80 -212 1 1829 2796 156 48 102 chr1 163063753 163064361 -34131071 - RMER15 LTR ERVL 0 575 1 1 1829 1207 48 7 0 chr1 163064465 163064612 -34130820 + B1_Mus1 SINE Alu 1 148 0 1 1829 242 279 0 0 chr1 163064724 163064785 -34130647 + B4A SINE B4 1 61 -231 1 1829 1187 226 44 0 chr1 163064785 163065037 -34130395 + ERVL-B4-int LTR ERVL 4347 4609 -1105 1 1829 2231 101 8 71 chr1 163065467 163065753 -34129679 + ORR1A4 LTR MaLR 1 286 -43 1 1829 1211 41 14 0 chr1 163065753 163065899 -34129533 + B1_Mus1 SINE Alu 1 148 0 1 1829 2231 101 8 71 chr1 163065899 163065963 -34129469 + ORR1A4 LTR MaLR 287 329 0 1 1829 382 224 53 53 chr1 163066340 163066491 -34128941 + L1MC4a LINE L1 5682 5832 -2050 1 1829 266 330 34 0 chr1 163066673 163066791 -34128641 - ERVL-E-int LTR ERVL -4250 1417 1296 1 1829 291 278 52 36 chr1 163067151 163067342 -34128090 + MLT1B LTR MaLR 1 238 -152 1 1829 771 309 98 34 chr1 163067501 163068026 -34127406 + HERV16-int LTR ERVL 2033 2594 -3120 1 1829 404 351 71 5 chr1 163068042 163068254 -34127178 + HERV16-int LTR ERVL 2647 2872 -2124 1 1829 736 264 47 14 chr1 163068481 163068696 -34126736 + B4A SINE B4 2 223 -69 1 1829 944 201 52 0 chr1 163068930 163069124 -34126308 - B3 SINE B2 -6 210 7 1 1829 746 31 0 0 chr1 163069313 163069409 -34126023 - B1_Mm SINE Alu 0 147 52 1 1829 459 0 0 0 chr1 163069426 163069477 -34125955 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1829 401 244 179 52 chr1 163069617 163069829 -34125603 - ORR1E LTR MaLR -41 318 80 1 1829 675 200 52 119 chr1 163070232 163070442 -34124990 + B3A SINE B2 1 196 -2 1 1829 381 248 92 17 chr1 163070477 163070596 -34124836 + B1F SINE Alu 22 149 0 1 1829 404 286 39 23 chr1 163070597 163070726 -34124706 + RSINE1 SINE B4 1 131 -34 1 1829 1245 48 0 0 chr1 163070846 163070992 -34124440 + B1_Mus2 SINE Alu 1 146 -1 1 1829 285 100 0 0 chr1 163070992 163071042 -34124390 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 1 1829 23 0 0 0 chr1 163071081 163071104 -34124328 + AT_rich Low_complexity Low_complexity 1 23 0 1 1829 414 0 0 0 chr1 163071389 163071435 -34123997 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1829 790 160 0 0 chr1 163071462 163071587 -34123845 + B1_Mur4 SINE Alu 1 125 -25 1 1829 535 207 0 41 chr1 163071716 163071837 -34123595 - PB1D9 SINE Alu 0 120 5 1 1829 516 249 138 12 chr1 163071924 163072091 -34123341 - B3A SINE B2 -6 192 5 1 1829 1411 81 16 0 chr1 163073858 163074043 -34121389 - B2_Mm2 SINE B2 -6 189 2 1 1829 277 257 9 9 chr1 163074714 163074824 -34120608 + CT-rich Low_complexity Low_complexity 3 112 0 1 1829 260 250 37 24 chr1 163075048 163075130 -34120302 - PB1D10 SINE Alu -34 83 1 1 1829 1111 182 209 17 chr1 163075155 163075457 -34119975 - ORR1D1 LTR MaLR -2 372 13 1 1829 7496 91 23 15 chr1 163075479 163075603 -34119829 - Lx LINE L1 0 6654 6535 1 1829 180 0 0 0 chr1 163075603 163075623 -34119809 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 1 1829 7496 91 23 15 chr1 163075623 163075679 -34119753 - Lx LINE L1 -120 6534 6471 1 1829 3243 95 143 4 chr1 163075679 163076174 -34119258 - LTRIS2 LTR ERV1 0 564 1 1 1829 8385 115 19 8 chr1 163076174 163078067 -34117365 - Lx LINE L1 -184 6470 4552 1 1829 293 239 45 11 chr1 163078225 163078314 -34117118 - MLT1F2 LTR MaLR -7 553 462 1 1829 339 313 15 22 chr1 163078331 163078465 -34116967 - MLT1F2 LTR MaLR -392 168 36 1 1829 432 349 20 33 chr1 163078484 163078635 -34116797 - B3A SINE B2 -43 155 7 1 1829 660 243 0 20 chr1 163078955 163079102 -34116330 + B1F2 SINE Alu 6 149 0 1 1829 23 0 0 0 chr1 163079369 163079392 -34116040 + AT_rich Low_complexity Low_complexity 1 23 0 1 1829 651 160 17 196 chr1 163079533 163079712 -34115720 + B1_Mur1 SINE Alu 2 148 -1 1 1829 4821 182 85 22 chr1 163079716 163080460 -34114972 + RMER12 LTR ERVK 1 767 -555 1 1829 366 23 0 0 chr1 163080460 163080503 -34114929 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 1 1829 4821 182 85 22 chr1 163080503 163080867 -34114565 + RMER12 LTR ERVK 768 1177 -145 1 1829 795 209 92 29 chr1 163081712 163081919 -34113513 + ID_B1 SINE B4 1 220 -4 2 1829 303 28 0 0 chr1 163082088 163082124 -34113308 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 2 1829 305 240 13 13 chr1 163082124 163082189 -34113243 - B1_Mur2 SINE Alu -17 132 68 2 1829 764 99 58 0 chr1 163082183 163082304 -34113128 - B1_Mus2 SINE Alu -19 128 1 2 1829 4494 76 17 8 chr1 163082503 163083102 -34112330 - L1_Mus3 LINE L1 -7 6631 6028 2 1829 392 310 58 21 chr1 163083102 163083285 -34112147 + MIRb SINE MIR 46 235 -33 2 1829 546 264 192 115 chr1 163083368 163083511 -34111921 + MER54B LTR ERVL 13 181 -612 2 1829 261 0 0 0 chr1 163083511 163083540 -34111892 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1829 546 264 192 115 chr1 163083540 163083708 -34111724 + MER54B LTR ERVL 182 348 -445 2 1829 2113 51 30 20 chr1 163083734 163084036 -34111396 - IAPLTR2b LTR ERVK -20 307 3 2 1829 432 351 83 22 chr1 163084036 163084251 -34111181 + MER54B LTR ERVL 358 586 -207 2 1829 430 268 103 29 chr1 163084807 163085011 -34110421 + MIR SINE MIR 28 246 -16 2 1829 309 299 83 9 chr1 163085059 163085167 -34110265 - Tigger5 DNA MER2_type 0 2406 2291 2 1829 387 357 16 0 chr1 163085188 163085317 -34110115 - Tigger5 DNA MER2_type -2195 211 81 2 1829 246 128 0 0 chr1 163085720 163085759 -34109673 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1829 348 286 188 6 chr1 163086731 163086896 -34108536 + MIR SINE MIR 16 210 -52 2 1829 198 0 0 0 chr1 163087088 163087110 -34108322 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1829 263 297 54 0 chr1 163087726 163087800 -34107632 + Lx8 LINE L1 6423 6500 -973 2 1829 739 253 32 37 chr1 163087835 163088024 -34107408 + Lx8 LINE L1 7074 7261 -212 2 1829 298 236 0 53 chr1 163088087 163088163 -34107269 + ID4 SINE ID 3 74 -9 2 1829 228 143 0 0 chr1 163088169 163088211 -34107221 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1829 208 139 0 0 chr1 163088324 163088360 -34107072 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1829 1229 54 0 0 chr1 163088360 163088508 -34106924 - B1_Mus1 SINE Alu 0 148 1 2 1829 198 0 0 0 chr1 163089318 163089340 -34106092 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1829 436 238 55 16 chr1 163089764 163089892 -34105540 + MLT1-int LTR MaLR 402 534 -837 2 1829 1587 116 0 30 chr1 163090253 163090520 -34104912 + RMER20B LTR ERVK 1 259 -368 2 1829 256 157 0 19 chr1 163090593 163090645 -34104787 + RMER20B LTR ERVK 541 591 -36 2 1829 614 248 14 0 chr1 163091488 163091629 -34103803 + B1F1 SINE Alu 1 143 -6 2 1829 252 0 0 0 chr1 163092228 163092256 -34103176 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1829 913 206 33 51 chr1 163092574 163092789 -34102643 - B3 SINE B2 0 216 6 2 1829 546 269 20 20 chr1 163092908 163093060 -34102372 - MER3 DNA MER1_type -3 206 55 2 1829 524 216 6 139 chr1 163093146 163093318 -34102114 - RSINE1 SINE B4 0 165 17 2 1829 687 257 39 10 chr1 163093689 163093897 -34101535 - B3 SINE B2 0 216 3 2 1829 1568 269 102 30 chr1 163094178 163094406 -34101026 - L1MB7 LINE L1 0 6184 5952 2 1829 180 0 0 0 chr1 163094406 163094426 -34101006 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 2 1829 459 265 14 49 chr1 163094426 163094569 -34100863 - B1F1 SINE Alu -11 138 1 2 1829 1568 269 102 30 chr1 163094569 163094968 -34100464 - L1MB7 LINE L1 -233 5951 5512 2 1829 1562 58 0 0 chr1 163094982 163095172 -34100260 - B2_Mm1a SINE B2 -1 192 3 2 1829 263 0 0 75 chr1 163095198 163095238 -34100194 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1829 1284 20 0 0 chr1 163095243 163095390 -34100042 - B1_Mm SINE Alu 0 147 1 2 1829 925 103 47 0 chr1 163095617 163095778 -34099654 + B2_Mm1a SINE B2 20 190 -3 2 1829 419 212 40 20 chr1 163096084 163096233 -34099199 - L1MB7 LINE L1 -1060 5086 4935 2 1829 887 250 25 47 chr1 163096768 163097045 -34098387 + B4 SINE B4 2 272 -20 2 1829 581 206 0 0 chr1 163097125 163097232 -34098200 + PB1D10 SINE Alu 10 116 -1 2 1829 261 197 113 0 chr1 163100512 163100583 -34094849 - Charlie18a DNA MER1_type -101 241 163 2 1829 441 332 199 14 chr1 163102395 163102761 -34092671 + MLT1G1 LTR MaLR 39 472 -107 2 1829 349 338 49 27 chr1 163103187 163103412 -34092020 + MLT1G1-int LTR MaLR 330 559 -850 2 1829 1073 88 58 6 chr1 163104610 163104782 -34090650 + B2_Mm1t SINE B2 10 190 -3 2 1829 3010 47 30 18 chr1 163104869 163105262 -34090170 + MTB LTR MaLR 1 398 -2 2 1829 362 380 47 6 chr1 163106104 163106276 -34089156 + MER91A DNA Tip100 1 179 -17 2 1829 960 103 0 20 chr1 163106575 163106723 -34088709 + B2_Mm2 SINE B2 3 147 -48 2 1829 1038 82 7 40 chr1 163106723 163106875 -34088557 + B1_Mus1 SINE Alu 2 148 0 2 1829 198 103 0 0 chr1 163106961 163106990 -34088442 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1829 687 136 68 0 chr1 163107668 163107786 -34087646 + B1_Mus1 SINE Alu 23 148 0 2 1829 770 223 13 84 chr1 163107794 163108019 -34087413 - B3 SINE B2 -5 211 3 2 1829 216 67 0 0 chr1 163108701 163108731 -34086701 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1829 234 167 67 0 chr1 163108737 163108797 -34086635 - L1MA5 LINE L1 -38 6262 6199 2 1829 24 0 0 0 chr1 163108809 163108833 -34086599 + AT_rich Low_complexity Low_complexity 1 24 0 2 1829 283 228 36 60 chr1 163109017 163109101 -34086331 - ID4 SINE ID 0 83 2 2 1829 813 240 9 55 chr1 163109407 163109627 -34085805 - B3 SINE B2 -6 210 1 2 1829 288 270 23 116 chr1 163109886 163110058 -34085374 - MIR SINE MIR -5 257 102 2 1829 973 226 9 14 chr1 163110511 163110722 -34084710 + B3 SINE B2 1 210 -6 2 1829 350 245 53 0 chr1 163111796 163111897 -34083535 - B1_Mur1 SINE Alu -27 122 4 2 1829 957 217 9 55 chr1 163112032 163112251 -34083181 + B3 SINE B2 8 216 0 2 1829 284 206 31 16 chr1 163112260 163112324 -34083108 + Lx8 LINE L1 7399 7463 -10 2 1829 30 27 0 0 chr1 163112329 163112366 -34083066 + AT_rich Low_complexity Low_complexity 1 37 0 2 1829 534 236 21 8 chr1 163113102 163113223 -34082209 - B1_Mur1 SINE Alu -7 142 20 2 1829 187 173 39 0 chr1 163113526 163113578 -34081854 + GA-rich Low_complexity Low_complexity 1 54 0 2 1829 339 113 0 0 chr1 163113581 163113643 -34081789 + (CAGA)n Simple_repeat Simple_repeat 2 63 0 2 1829 435 38 0 0 chr1 163114091 163114144 -34081288 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1829 688 212 22 7 chr1 163114500 163114638 -34080794 + B1_Mur1 SINE Alu 1 140 -9 2 1829 273 159 3 0 chr1 163114645 163114707 -34080725 + ORR1D1-int LTR MaLR 223 282 -1681 2 1829 228 219 0 0 chr1 163114721 163114762 -34080670 + polypyrimidine Low_complexity Low_complexity 3 43 0 2 1829 873 144 15 0 chr1 163114777 163114909 -34080523 - B1_Mur3 SINE Alu -11 138 5 2 1829 190 169 31 0 chr1 163114915 163114980 -34080452 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 2 1829 2078 226 93 70 chr1 163114985 163115242 -34080190 - Lx7 LINE L1 -1 7695 7449 2 1829 762 90 41 20 chr1 163115242 163115389 -34080043 + Lx3_Mus LINE L1 6852 7001 -8 2 1829 2078 226 93 70 chr1 163115389 163115893 -34079539 - Lx7 LINE L1 -248 7448 6916 2 1829 4010 195 77 42 chr1 163115897 163116176 -34079256 + ORR1D1-int LTR MaLR 341 617 -753 2 1829 3956 38 6 0 chr1 163116176 163116645 -34078787 - L1Md_F3 LINE L1 -3 6581 6110 2 1829 4010 195 77 42 chr1 163116645 163117360 -34078072 + ORR1D1-int LTR MaLR 618 1370 0 2 1829 2202 160 14 3 chr1 163117360 163117730 -34077702 + ORR1D1 LTR MaLR 1 374 0 2 1829 434 325 76 0 chr1 163117750 163117907 -34077525 + MTEa LTR MaLR 169 337 -42 2 1829 438 300 12 30 chr1 163117905 163118070 -34077362 - B3 SINE B2 0 216 55 2 1829 574 178 40 0 chr1 163118071 163118172 -34077260 - B3 SINE B2 -111 105 1 2 1829 310 190 0 0 chr1 163118172 163118226 -34077206 + MTEa LTR MaLR 323 376 -3 2 1829 1865 161 33 17 chr1 163118454 163119068 -34076364 + L1_Mur2 LINE L1 871 1562 -4315 2 1829 3472 138 34 5 chr1 163119063 163119146 -34076286 + L1_Mur2 LINE L1 1968 2051 -3826 2 1829 441 0 0 0 chr1 163119146 163119195 -34076237 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1829 3472 138 34 5 chr1 163119195 163119695 -34075737 + L1_Mur2 LINE L1 2052 2568 -3309 2 1829 4799 138 15 38 chr1 163119680 163120552 -34074880 + L1_Mur2 LINE L1 2994 3845 -2032 2 1829 504 222 204 5 chr1 163120553 163120739 -34074693 + MTD LTR MaLR 197 419 0 2 1829 253 269 0 29 chr1 163120815 163120884 -34074548 - ID4 SINE ID -15 68 2 2 1829 638 271 164 51 chr1 163121010 163121656 -34073776 + L1MEc LINE L1 1110 1828 -4572 2 1829 305 225 23 70 chr1 163121675 163121761 -34073671 - L1MB7 LINE L1 -197 5987 5906 2 1829 496 349 68 16 chr1 163121762 163122071 -34073361 - MER44A DNA MER2_type 0 339 15 2 1829 290 226 71 0 chr1 163122087 163122171 -34073261 - L1MB7 LINE L1 -275 5903 5814 2 1829 813 96 0 0 chr1 163122318 163122443 -34072989 + (TC)n Simple_repeat Simple_repeat 2 126 0 2 1829 815 168 15 0 chr1 163122443 163122580 -34072852 - B1_Mur4 SINE Alu -11 139 1 2 1829 695 272 87 24 chr1 163122688 163122940 -34072492 + B4A SINE B4 3 270 -22 2 1829 860 311 17 84 chr1 163123034 163123392 -34072040 + MTE2a LTR MaLR 7 340 -39 2 1829 249 83 0 0 chr1 163123397 163123433 -34071999 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1829 331 107 53 0 chr1 163124010 163124085 -34071347 + Lx9 LINE L1 7566 7644 0 2 1829 1493 68 5 15 chr1 163126728 163126923 -34068509 + B2_Mm1a SINE B2 1 193 0 2 1829 626 159 9 0 chr1 163126926 163127039 -34068393 + RLTR19-int LTR ERVK 2326 2439 -3698 2 1829 312 91 0 0 chr1 163127119 163127163 -34068269 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1829 435 83 0 0 chr1 163127299 163127359 -34068073 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1829 528 195 0 0 chr1 163128818 163128972 -34066460 + G-rich Low_complexity Low_complexity 3 156 0 2 1829 315 0 0 0 chr1 163129217 163129252 -34066180 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1829 1476 59 21 5 chr1 163129448 163129634 -34065798 - B2_Mm2 SINE B2 -5 190 2 2 1829 231 36 0 0 chr1 163129814 163129842 -34065590 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 2 1829 321 159 0 0 chr1 163131129 163131192 -34064240 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1829 1045 225 9 5 chr1 163131302 163131512 -34063920 + B3 SINE B2 1 211 -5 2 1829 333 0 0 0 chr1 163131623 163131660 -34063772 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1829 210 204 0 36 chr1 163131661 163131717 -34063715 + (TATG)n Simple_repeat Simple_repeat 1 54 0 2 1829 491 295 43 29 chr1 163131743 163132019 -34063413 - B4A SINE B4 -12 280 1 2 1829 6439 50 1 3 chr1 163132389 163133166 -34062266 - L1_Mus1 LINE L1 0 6567 5792 2 1829 288 264 16 113 chr1 163133966 163134090 -34061342 + MT2B LTR ERVL 159 270 -331 3 1829 594 214 17 0 chr1 163133991 163134108 -34061324 + B1_Mur2 SINE Alu 18 136 -13 3 1829 207 0 0 0 chr1 163134108 163134131 -34061301 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3 1829 308 286 0 0 chr1 163134280 163134358 -34061074 - ID4 SINE ID -53 99 22 3 1829 234 348 128 41 chr1 163135808 163136027 -34059405 - MLT1J LTR MaLR -274 238 1 3 1829 661 230 49 4 chr1 163136523 163136718 -34058714 + B4 SINE B4 1 219 -73 3 1829 212 298 0 0 chr1 163136834 163136891 -34058541 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1829 2524 119 10 20 chr1 163136909 163137311 -34058121 + RMER10B LTR ERVL 1 398 0 3 1829 25 0 0 0 chr1 163137869 163137894 -34057538 + AT_rich Low_complexity Low_complexity 1 25 0 3 1829 180 0 0 0 chr1 163137993 163138013 -34057419 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1829 560 204 6 120 chr1 163138045 163138186 -34057246 - B4A SINE B4 0 292 171 3 1829 478 273 15 29 chr1 163138186 163138322 -34057110 + RSINE1 SINE B4 3 136 -29 3 1829 377 165 157 37 chr1 163138390 163138497 -34056935 - PB1D7 SINE Alu -1 119 2 3 1829 184 224 15 15 chr1 163138895 163138963 -34056469 + CT-rich Low_complexity Low_complexity 3 70 0 3 1829 441 258 40 16 chr1 163140539 163140665 -34054767 - MTEa LTR MaLR -7 372 244 3 1829 213 94 0 0 chr1 163140695 163140727 -34054705 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 3 1829 2378 262 42 59 chr1 163140754 163141590 -34053842 - Lx8 LINE L1 -370 7103 6282 3 1829 759 196 7 0 chr1 163141854 163141992 -34053440 - B1_Mus2 SINE Alu -4 143 5 3 1829 738 210 41 68 chr1 163142837 163143057 -34052375 + B3 SINE B2 1 214 -2 3 1829 180 0 0 0 chr1 163143743 163143763 -34051669 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 3 1829 4667 48 14 3 chr1 163143763 163144333 -34051099 - L1Md_F2 LINE L1 -14 6568 5993 3 1829 795 150 15 0 chr1 163144500 163144633 -34050799 - B1_Mus1 SINE Alu -11 137 3 3 1829 720 182 132 23 chr1 163144707 163144881 -34050551 - B2_Mm2 SINE B2 -2 193 1 3 1829 454 244 75 25 chr1 163144910 163145070 -34050362 - RMER15 LTR ERVL 0 575 408 3 1829 468 184 39 39 chr1 163145140 163145270 -34050162 - RMER15 LTR ERVL -445 130 1 3 1829 28 29 0 0 chr1 163145336 163145371 -34050061 + AT_rich Low_complexity Low_complexity 1 35 0 3 1829 189 309 123 0 chr1 163145385 163145466 -34049966 - MIRb SINE MIR -19 249 159 3 1829 630 153 0 0 chr1 163146395 163146506 -34048926 + CT-rich Low_complexity Low_complexity 2 112 0 3 1829 468 0 0 0 chr1 163147194 163147246 -34048186 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1829 234 105 0 0 chr1 163147246 163147283 -34048149 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1829 201 154 0 0 chr1 163147317 163147356 -34048076 + A-rich Low_complexity Low_complexity 3 41 0 3 1829 486 0 0 0 chr1 163147375 163147429 -34048003 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 3 1829 1542 146 14 127 chr1 163147751 163148113 -34047319 - ORR1A4 LTR MaLR -8 321 1 3 1829 540 273 0 0 chr1 163148238 163148403 -34047029 + (TA)n Simple_repeat Simple_repeat 1 165 0 3 1829 478 233 129 0 chr1 163149014 163149130 -34046302 + B1F1 SINE Alu 7 137 -12 3 1829 1129 206 9 36 chr1 163149359 163149581 -34045851 + B3 SINE B2 1 216 0 3 1829 636 14 0 0 chr1 163150407 163150480 -34044952 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 3 1829 364 333 43 47 chr1 163150812 163151070 -34044362 - MLT1B LTR MaLR -64 326 70 3 1829 1077 60 0 0 chr1 163153718 163153868 -34041564 + (TG)n Simple_repeat Simple_repeat 2 151 0 3 1829 195 293 59 71 chr1 163155508 163155677 -34039755 - L2a LINE L2 -1 3425 3259 3 1829 3384 159 62 14 chr1 163155680 163155966 -34039466 - RMER6C LTR ERVK 0 690 387 3 1829 270 0 0 0 chr1 163155966 163155996 -34039436 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1829 3384 159 62 14 chr1 163155996 163156367 -34039065 - RMER6C LTR ERVK -304 386 1 3 1829 244 276 157 28 chr1 163156512 163156692 -34038740 - MTE2b LTR MaLR -201 178 5 3 1829 637 146 80 16 chr1 163156813 163156938 -34038494 - B1_Mus1 SINE Alu 0 148 16 3 1829 348 241 25 12 chr1 163157689 163157769 -34037663 - ID2 SINE ID -1 82 2 3 1829 1262 21 0 0 chr1 163158446 163158591 -34036841 - B1_Mus2 SINE Alu -2 145 1 3 1829 793 215 43 43 chr1 163159135 163159344 -34036088 - B3 SINE B2 -3 213 5 3 1829 1960 138 45 3 chr1 163159780 163160093 -34035339 - ORR1A3 LTR MaLR 0 326 1 3 1829 856 263 169 22 chr1 163160778 163161097 -34034335 - MTE2b LTR MaLR -12 367 2 3 1829 233 279 89 0 chr1 163161407 163161486 -34033946 + PB1 SINE Alu 41 126 -1 3 1829 207 0 0 0 chr1 163161564 163161587 -34033845 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1829 216 381 56 0 chr1 163162901 163163027 -34032405 + MIRc SINE MIR 71 203 -65 3 1829 846 0 0 0 chr1 163164449 163164543 -34030889 + (TTC)n Simple_repeat Simple_repeat 2 95 0 3 1829 834 167 12 25 chr1 163164544 163164704 -34030728 - B2_Mm2 SINE B2 -34 161 4 3 1829 622 242 48 84 chr1 163165378 163165545 -34029887 + ID_B1 SINE B4 81 245 -47 3 1829 620 254 77 32 chr1 163165668 163165888 -34029544 + B4A SINE B4 2 231 -61 3 1829 292 231 153 22 chr1 163166325 163166462 -34028970 - Lx9 LINE L1 -2 7642 7488 3 1829 358 178 302 8 chr1 163166526 163166645 -34028787 + B3 SINE B2 63 216 0 3 1829 21 0 0 0 chr1 163166649 163166670 -34028762 + AT_rich Low_complexity Low_complexity 1 21 0 3 1829 33 0 0 0 chr1 163167180 163167213 -34028219 + AT_rich Low_complexity Low_complexity 1 33 0 3 1829 348 127 0 0 chr1 163167519 163167574 -34027858 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 3 1829 226 260 64 13 chr1 163167855 163167933 -34027499 + MTE2a LTR MaLR 5 86 -310 3 1829 709 281 96 38 chr1 163167915 163168229 -34027203 + MTE2a LTR MaLR 40 371 -8 3 1829 1591 42 16 0 chr1 163168745 163168937 -34026495 + B2_Mm2 SINE B2 1 195 0 3 1829 352 216 137 0 chr1 163169002 163169104 -34026328 + PB1D10 SINE Alu 1 116 -1 3 1829 710 284 31 18 chr1 163169214 163169440 -34025992 - B4 SINE B4 -2 290 62 3 1829 256 368 60 24 chr1 163169652 163169709 -34025723 + B4A SINE B4 26 88 -204 3 1829 523 209 9 19 chr1 163169709 163169826 -34025606 + PB1D9 SINE Alu 2 124 -3 3 1829 1104 52 0 0 chr1 163169940 163170074 -34025358 - B1_Mus1 SINE Alu -14 134 1 3 1829 337 257 36 27 chr1 163170298 163170410 -34025022 + PB1D10 SINE Alu 5 117 0 3 1829 716 164 358 0 chr1 163170758 163170923 -34024509 - URR1B DNA MER1_type -1 224 1 3 1829 265 270 54 0 chr1 163172466 163172540 -34022892 + PB1D10 SINE Alu 3 80 -37 3 1829 502 327 31 0 chr1 163172543 163172702 -34022730 + ID_B1 SINE B4 6 169 -55 3 1829 357 43 0 0 chr1 163172711 163172758 -34022674 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1829 372 267 35 0 chr1 163172906 163172992 -34022440 - PB1D10 SINE Alu -7 110 22 3 1829 1684 31 0 0 chr1 163173201 163173394 -34022038 + B2_Mm1a SINE B2 1 193 0 3 1829 1030 122 139 25 chr1 163174055 163174257 -34021175 - URR1A DNA MER1_type -1 225 1 3 1829 230 302 47 0 chr1 163176009 163176095 -34019337 - L2 LINE L2 -823 2596 2507 3 1829 432 274 97 89 chr1 163176666 163176914 -34018518 - MER21B LTR ERV1 -11 852 603 3 1829 418 301 141 15 chr1 163176995 163177201 -34018231 - MER21B LTR ERV1 -408 455 224 3 1829 207 0 0 0 chr1 163177233 163177256 -34018176 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 3 1829 398 176 69 23 chr1 163177810 163177897 -34017535 - B1_Mus2 SINE Alu -55 92 2 3 1829 429 20 0 0 chr1 163180054 163180104 -34015328 + (CATA)n Simple_repeat Simple_repeat 4 53 0 3 1829 214 29 0 54 chr1 163181341 163181378 -34014054 + (CGGGG)n Simple_repeat Simple_repeat 4 38 0 3 1829 22 0 0 0 chr1 163181792 163181814 -34013618 + AT_rich Low_complexity Low_complexity 1 22 0 3 1829 280 239 55 79 chr1 163182050 163182177 -34013255 + PB1 SINE Alu 1 124 -3 3 1829 612 173 126 0 chr1 163183156 163183283 -34012149 - B1_Mur3 SINE Alu -6 143 1 3 1829 297 109 0 0 chr1 163183947 163184002 -34011430 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1829 447 19 0 0 chr1 163184329 163184381 -34011051 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1830 1390 94 16 0 chr1 163184679 163184870 -34010562 + B2_Mm2 SINE B2 2 195 0 3 1830 1222 87 81 0 chr1 163184920 163185093 -34010339 + B2_Mm1t SINE B2 2 188 -5 3 1830 266 294 106 50 chr1 163185146 163185325 -34010107 + L2 LINE L2 2013 2201 -1218 3 1830 414 0 0 0 chr1 163185333 163185379 -34010053 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1830 1595 193 30 7 chr1 163185379 163185681 -34009751 - Lx5 LINE L1 -21 7029 6721 3 1830 207 0 0 0 chr1 163186803 163186826 -34008606 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1830 932 172 0 6 chr1 163188933 163189244 -34006188 + CT-rich Low_complexity Low_complexity 1 309 0 3 1830 549 0 0 0 chr1 163189244 163189305 -34006127 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 3 1830 278 175 0 34 chr1 163189305 163189364 -34006068 - B3 SINE B2 -153 63 7 3 1830 22 35 0 0 chr1 163189365 163189394 -34006038 + AT_rich Low_complexity Low_complexity 1 29 0 3 1830 323 206 22 73 chr1 163189435 163189545 -34005887 - B3 SINE B2 -81 117 13 3 1830 26 30 0 0 chr1 163189894 163189927 -34005505 + AT_rich Low_complexity Low_complexity 1 33 0 3 1830 1224 48 0 0 chr1 163189950 163190096 -34005336 + B1_Mus1 SINE Alu 1 146 -2 3 1830 234 0 0 0 chr1 163190096 163190122 -34005310 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1830 845 132 0 7 chr1 163190308 163190453 -34004979 + (TTCC)n Simple_repeat Simple_repeat 1 144 0 4 1830 594 244 34 58 chr1 163190453 163190647 -34004785 - ID_B1 SINE B4 -1 223 55 4 1830 515 53 13 0 chr1 163191293 163191368 -34004064 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1830 319 178 13 64 chr1 163191860 163191938 -34003494 + MTC LTR MaLR 114 187 -234 4 1830 1719 26 0 0 chr1 163191940 163192132 -34003300 - B2_Mm1a SINE B2 0 193 2 4 1830 551 197 7 80 chr1 163192248 163192386 -34003046 - B1_Mur3 SINE Alu -21 128 1 4 1830 1756 168 3 88 chr1 163192578 163192963 -34002469 + ORR1B2 LTR MaLR 1 352 -15 4 1830 249 33 0 0 chr1 163193006 163193036 -34002396 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1830 363 44 0 0 chr1 163193375 163193420 -34002012 + (TTA)n Simple_repeat Simple_repeat 3 47 0 4 1830 512 254 140 35 chr1 163193424 163193595 -34001837 - ID_B1 SINE B4 -29 195 7 4 1830 964 146 11 0 chr1 163194067 163194245 -34001187 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1830 303 28 0 0 chr1 163195581 163195617 -33999815 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1830 268 342 88 7 chr1 163196162 163196309 -33999123 - MER63A DNA AcHobo -1 209 51 4 1830 2122 189 39 41 chr1 163196529 163197014 -33998418 - Lx2B LINE L1 0 7000 6517 4 1830 283 188 129 50 chr1 163197241 163197342 -33998090 - ORR1D1 LTR MaLR -12 362 254 4 1830 1004 111 19 0 chr1 163197611 163197773 -33997659 + B2_Mm1t SINE B2 15 179 -14 4 1830 298 133 6 27 chr1 163197835 163197943 -33997489 + B2_Mm2 SINE B2 47 187 -8 4 1830 450 0 0 0 chr1 163198733 163198783 -33996649 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1830 267 122 0 0 chr1 163198880 163198929 -33996503 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1830 315 0 0 0 chr1 163199579 163199614 -33995818 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1830 257 0 30 0 chr1 163200138 163200171 -33995261 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1830 527 207 85 17 chr1 163200280 163200398 -33995034 - B1_Mur1 SINE Alu -5 144 19 4 1830 1018 67 74 0 chr1 163200405 163200540 -33994892 + B1_Mus2 SINE Alu 3 147 0 4 1830 216 0 0 0 chr1 163200540 163200564 -33994868 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1830 863 170 138 89 chr1 163200571 163200817 -33994615 - RLTR25B LTR ERVK -5 1023 766 4 1830 198 0 0 0 chr1 163200847 163200869 -33994563 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 1830 3460 170 128 26 chr1 163201182 163201956 -33993476 - RLTR25B LTR ERVK -175 853 1 4 1830 239 212 0 12 chr1 163202006 163202092 -33993340 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1830 239 294 15 0 chr1 163202095 163202163 -33993269 - B4A SINE B4 -197 95 27 4 1830 230 203 40 80 chr1 163202110 163202185 -33993247 - B3A SINE B2 -119 79 8 4 1830 1088 153 18 159 chr1 163202474 163202871 -33992561 - RMER17C LTR ERVK 0 410 70 4 1830 2146 67 181 18 chr1 163202838 163203220 -33992212 - RMER2 LTR ERV1 -123 444 1 4 1830 28 0 0 0 chr1 163203434 163203462 -33991970 + AT_rich Low_complexity Low_complexity 1 28 0 4 1830 315 0 0 0 chr1 163204889 163204924 -33990508 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1830 336 24 0 0 chr1 163204924 163204964 -33990468 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1830 356 251 114 92 chr1 163205069 163205253 -33990179 - MER52-int LTR ERV1 -3035 4056 3869 4 1830 1590 131 64 61 chr1 163205254 163205596 -33989836 - ORR1B2 LTR MaLR -24 343 1 4 1830 23 0 0 0 chr1 163205850 163205873 -33989559 + AT_rich Low_complexity Low_complexity 1 23 0 4 1830 183 42 0 0 chr1 163205925 163205949 -33989483 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1830 1281 220 95 3 chr1 163206150 163206446 -33988986 + ORR1D1 LTR MaLR 1 323 -51 4 1830 1083 144 5 22 chr1 163206463 163206647 -33988785 - RLTR11A2 LTR ERVK -346 181 1 4 1830 1226 224 251 0 chr1 163206647 163206982 -33988450 - Lx6 LINE L1 -332 7128 6710 4 1830 3178 73 2 0 chr1 163207395 163207794 -33987638 + MTB LTR MaLR 1 400 0 4 1830 1742 10 0 0 chr1 163208568 163208766 -33986666 + L1Md_A LINE L1 6385 6582 0 4 1830 641 163 73 37 chr1 163208852 163209043 -33986389 + RLTR31_Mm LTR ERVK 85 282 -279 4 1830 216 0 0 0 chr1 163209278 163209302 -33986130 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1830 2794 95 34 12 chr1 163209386 163209872 -33985560 + RMER16 LTR ERVK 1 533 0 4 1830 265 247 62 0 chr1 163210759 163210840 -33984592 - MIRb SINE MIR -120 148 63 4 1830 1851 221 18 53 chr1 163211118 163211609 -33983823 - RMER19C LTR ERVK 0 611 138 4 1830 270 235 12 16 chr1 163211857 163211932 -33983500 + MLT1A1 LTR MaLR 3 82 -326 4 1830 327 291 0 0 chr1 163211946 163212025 -33983407 + 5S rRNA rRNA 12 90 -31 4 1830 269 191 172 35 chr1 163212051 163212138 -33983294 + MLT1A1 LTR MaLR 119 217 -191 4 1830 930 164 13 14 chr1 163212163 163212395 -33983037 - ORR1A3 LTR MaLR -1 383 1 4 1830 400 193 12 0 chr1 163212407 163212490 -33982942 + MLT1A1 LTR MaLR 320 403 -5 4 1830 264 211 0 0 chr1 163214349 163214420 -33981012 + CT-rich Low_complexity Low_complexity 2 72 0 4 1830 266 318 24 79 chr1 163215098 163215262 -33980170 + MER53 DNA hAT 39 193 0 4 1830 1177 68 0 0 chr1 163215389 163215537 -33979895 - B1_Mus1 SINE Alu 0 148 1 4 1830 1086 92 0 0 chr1 163216050 163216191 -33979241 - B1_Mus1 SINE Alu -7 141 1 4 1830 387 0 0 0 chr1 163216549 163216592 -33978840 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1830 238 26 25 25 chr1 163217865 163217905 -33977527 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1830 1148 61 0 13 chr1 163217905 163218043 -33977389 - B1_Mus2 SINE Alu -9 138 1 4 1830 189 0 0 0 chr1 163218170 163218191 -33977241 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1830 1219 57 10 150 chr1 163218689 163218709 -33976723 - B2_Mm1t SINE B2 -14 179 161 4 1830 264 30 0 0 chr1 163218709 163218742 -33976690 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4 1830 1219 57 10 150 chr1 163218742 163218928 -33976504 - B2_Mm1t SINE B2 -33 160 2 4 1830 405 272 59 91 chr1 163218952 163219138 -33976294 - B3A SINE B2 -18 180 1 4 1830 801 186 60 0 chr1 163220314 163220481 -33974951 + ORR1D1 LTR MaLR 196 372 -2 4 1830 497 270 26 26 chr1 163220484 163220636 -33974796 + Tigger7 DNA MER2_type 2340 2491 0 4 1830 603 264 127 0 chr1 163220665 163220862 -33974570 - ID_B1 SINE B4 -1 223 2 4 1830 371 189 0 62 chr1 163221079 163221139 -33974293 - MTC LTR MaLR -8 413 360 4 1830 1412 128 8 21 chr1 163221139 163221359 -33974073 - RMER6C LTR ERVK 0 690 474 4 1830 1703 100 23 0 chr1 163221359 163221620 -33973812 + RLTR19C LTR ERVK 1 267 -239 4 1830 815 117 0 0 chr1 163221617 163221737 -33973695 + RLTR19C LTR ERVK 387 506 0 4 1830 2060 157 89 31 chr1 163221737 163221779 -33973653 - RMER6C LTR ERVK -217 473 432 4 1830 1163 75 0 0 chr1 163221779 163221926 -33973506 - B1_Mus2 SINE Alu 0 147 1 4 1830 2060 157 89 31 chr1 163221926 163222330 -33973102 - RMER6C LTR ERVK -259 431 1 4 1830 1756 167 21 0 chr1 163222331 163222619 -33972813 - MTC LTR MaLR -60 361 68 4 1830 312 27 0 0 chr1 163222620 163222657 -33972775 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 4 1830 225 0 0 0 chr1 163222657 163222682 -33972750 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1830 1484 90 5 0 chr1 163222683 163222872 -33972560 - B2_Mm1t SINE B2 -3 190 1 4 1830 1377 80 15 70 chr1 163222877 163223078 -33972354 - B2_Mm2 SINE B2 -4 191 2 4 1830 436 165 25 12 chr1 163223078 163223158 -33972274 - MTC LTR MaLR -340 81 1 4 1830 249 206 92 40 chr1 163223163 163223239 -33972193 - MTE2a LTR MaLR -13 366 287 4 1830 512 249 59 45 chr1 163223584 163223685 -33971747 + RLTR15 LTR ERVK 1 100 -259 4 1830 423 0 0 0 chr1 163223685 163223732 -33971700 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1830 512 249 59 45 chr1 163223732 163223832 -33971600 + RLTR15 LTR ERVK 101 205 -154 4 1830 594 240 25 0 chr1 163224567 163224688 -33970744 - B1_Mur1 SINE Alu -19 130 7 4 1830 331 322 18 95 chr1 163224573 163224741 -33970691 - MT2B LTR ERVL -324 277 123 4 1830 724 247 12 25 chr1 163224845 163225007 -33970425 + RSINE1 SINE B4 3 162 -3 4 1830 628 249 21 46 chr1 163225289 163225483 -33969949 + B3A SINE B2 5 193 -5 4 1830 253 305 29 64 chr1 163226456 163226596 -33968836 + MIRb SINE MIR 45 179 -89 4 1830 807 148 68 30 chr1 163227291 163227423 -33968009 + B1_Mus1 SINE Alu 5 141 -7 4 1830 831 28 0 59 chr1 163227427 163227579 -33967853 + (CCAA)n Simple_repeat Simple_repeat 2 144 0 4 1830 870 295 27 37 chr1 163229067 163229363 -33966069 + Lx8 LINE L1 7119 7411 -62 4 1830 417 360 67 9 chr1 163230233 163230443 -33964989 - Arthur1B DNA Tip100 -964 261 40 4 1830 474 333 55 16 chr1 163230519 163230702 -33964730 + Arthur1 DNA Tip100 715 904 -3043 4 1830 641 305 51 76 chr1 163230724 163231157 -33964275 + Arthur1 DNA Tip100 3147 3568 -379 4 1830 900 324 137 6 chr1 163231172 163231507 -33963925 - MLT1D LTR MaLR -30 475 97 4 1830 871 252 129 26 chr1 163231752 163232054 -33963378 - RLTR18B LTR ERVK -67 445 113 4 1830 239 333 83 8 chr1 163232089 163232210 -33963222 + MIR3 SINE MIR 4 133 -75 4 1830 629 217 0 0 chr1 163233633 163233739 -33961693 + B3A SINE B2 10 115 -83 4 1830 1124 314 13 18 chr1 163234229 163234612 -33960820 + Lx7 LINE L1 6920 7300 -396 4 1830 195 129 0 0 chr1 163234632 163234663 -33960769 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1830 243 0 0 0 chr1 163234790 163234817 -33960615 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1830 692 222 100 10 chr1 163234876 163235076 -33960356 - Lx8 LINE L1 -244 7229 7012 4 1830 1241 93 15 98 chr1 163235143 163235346 -33960086 + B2_Mm2 SINE B2 2 187 -8 4 1830 402 115 0 0 chr1 163235592 163235653 -33959779 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 4 1830 588 95 0 0 chr1 163235665 163235749 -33959683 + (TCCC)n Simple_repeat Simple_repeat 4 87 0 4 1830 861 171 0 28 chr1 163235753 163235897 -33959535 - B1_Mus1 SINE Alu -6 142 3 4 1830 2015 111 10 10 chr1 163235917 163236227 -33959205 - Lx3A LINE L1 -798 6183 5874 4 1830 272 330 35 9 chr1 163236428 163236541 -33958891 - Tigger10 DNA Tigger -1226 617 502 5 1830 21 36 0 0 chr1 163236650 163236678 -33958754 + AT_rich Low_complexity Low_complexity 1 28 0 5 1830 680 151 178 23 chr1 163236702 163236831 -33958601 + B1_Mur3 SINE Alu 1 149 0 5 1830 513 341 47 65 chr1 163236878 163237525 -33957907 - L1_Mur3 LINE L1 -3116 2731 2073 5 1830 659 215 35 52 chr1 163237771 163237943 -33957489 + Lx8 LINE L1 6781 6949 -524 5 1830 396 0 0 0 chr1 163237943 163237987 -33957445 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1830 245 161 69 35 chr1 163237991 163238049 -33957383 + Lx8 LINE L1 7012 7071 -402 5 1830 531 0 0 0 chr1 163238181 163238240 -33957192 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1830 21 36 0 0 chr1 163238332 163238360 -33957072 + AT_rich Low_complexity Low_complexity 1 28 0 5 1830 510 146 233 74 chr1 163238500 163238663 -33956769 - B2_Mm2 SINE B2 -5 190 2 5 1830 867 104 243 0 chr1 163238663 163238807 -33956625 - B2_Mm1t SINE B2 -14 179 1 5 1830 612 220 0 0 chr1 163239127 163239365 -33956067 + (TG)n Simple_repeat Simple_repeat 1 238 0 5 1830 313 290 45 27 chr1 163239365 163239475 -33955957 - PB1D10 SINE Alu -3 114 3 5 1830 600 309 59 6 chr1 163239821 163239990 -33955442 + B3A SINE B2 5 182 -16 5 1830 315 0 0 0 chr1 163240218 163240253 -33955179 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1830 22 0 0 0 chr1 163241059 163241081 -33954351 + AT_rich Low_complexity Low_complexity 1 22 0 5 1830 875 206 147 32 chr1 163241107 163241297 -33954135 - B3 SINE B2 -3 213 2 5 1830 550 250 29 14 chr1 163241304 163241442 -33953990 - B1F SINE Alu 0 149 10 5 1830 746 227 74 17 chr1 163241472 163241647 -33953785 - MTD LTR MaLR -14 405 221 5 1830 1052 192 10 0 chr1 163241701 163241904 -33953528 + RLTR31A_Mm LTR ERVK 1 205 -379 5 1830 374 302 92 113 chr1 163242082 163242605 -33952827 + L1ME3B LINE L1 4872 5383 -763 5 1830 349 273 83 39 chr1 163242877 163243033 -33952399 + L1ME3B LINE L1 5691 5853 -387 5 1830 1104 113 0 19 chr1 163243609 163243771 -33951661 + RLTR1B LTR ERV1 354 512 0 5 1830 13200 89 63 36 chr1 163243771 163244897 -33950535 + RLTR1B-int LTR ERV1 1 1138 -2161 5 1830 549 0 0 0 chr1 163244897 163244958 -33950474 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1830 13200 89 63 36 chr1 163244958 163245885 -33949547 + RLTR1B-int LTR ERV1 1139 2108 -1191 5 1830 5389 32 52 0 chr1 163245882 163246514 -33948918 + RLTR1B-int LTR ERV1 2635 3299 0 5 1830 3822 53 75 58 chr1 163246514 163247017 -33948415 + RLTR1B LTR ERV1 1 512 0 5 1830 446 328 26 21 chr1 163248243 163248436 -33946996 + Lx8 LINE L1 6221 6414 -1059 5 1830 777 279 53 33 chr1 163249053 163249317 -33946115 + MLT1F1 LTR MaLR 47 322 -226 5 1830 243 232 72 0 chr1 163249645 163249714 -33945718 + ORR1D1 LTR MaLR 25 98 -276 5 1830 3556 147 32 37 chr1 163250026 163250586 -33944846 - RLTR17 LTR ERVK 0 692 139 5 1830 931 106 98 8 chr1 163250586 163250719 -33944713 - B1_Mus1 SINE Alu -1 147 3 5 1830 3556 147 32 37 chr1 163250719 163250780 -33944652 - RLTR17 LTR ERVK -554 138 74 5 1830 351 113 0 0 chr1 163251395 163251448 -33943984 + (TATG)n Simple_repeat Simple_repeat 4 56 0 5 1830 258 321 121 86 chr1 163251483 163251657 -33943775 - B4 SINE B4 -18 274 95 5 1830 228 184 0 0 chr1 163252255 163252304 -33943128 + CT-rich Low_complexity Low_complexity 2 50 0 5 1830 277 275 16 6 chr1 163252341 163252419 -33943013 + B3A SINE B2 72 150 -48 5 1830 2082 153 3 3 chr1 163252556 163252865 -33942567 - RLTR10E LTR ERVK 0 311 3 5 1830 4404 133 15 3 chr1 163252867 163253545 -33941887 - IAPEY3-int LTR ERVK 0 7680 6995 5 1830 1933 70 25 0 chr1 163253549 163253792 -33941640 - IAP-d-int LTR ERVK -1287 5255 5007 5 1830 360 158 0 0 chr1 163253792 163253849 -33941583 - IAP-d-int LTR ERVK -6039 503 447 5 1830 387 313 41 41 chr1 163253866 163254086 -33941346 - RLTR10-int LTR ERVK -6015 1566 1347 5 1830 3084 40 2 0 chr1 163254081 163254455 -33940977 - RLTR10-int LTR ERVK -1074 913 553 5 1830 320 226 0 41 chr1 163254455 163254475 -33940957 + T-rich Low_complexity Low_complexity 75 94 0 5 1830 1192 24 35 12 chr1 163254475 163254646 -33940786 + (TTTCC)n Simple_repeat Simple_repeat 2 176 0 5 1830 320 226 0 41 chr1 163254646 163254722 -33940710 + T-rich Low_complexity Low_complexity 2 74 0 5 1830 427 0 0 0 chr1 163254763 163254809 -33940623 - RLTR10-int LTR ERVK -7314 267 222 5 1830 237 280 0 0 chr1 163254809 163254859 -33940573 - RLTR27 LTR ERVK -37 272 223 5 1830 986 50 0 0 chr1 163254859 163254978 -33940454 - RLTR10-int LTR ERVK -1785 202 84 5 1830 2182 139 3 3 chr1 163254980 163255291 -33940141 - RLTR10E LTR ERVK 0 311 1 5 1830 210 162 0 0 chr1 163255406 163255443 -33939989 + T-rich Low_complexity Low_complexity 1 37 0 5 1830 2587 241 98 28 chr1 163255661 163256407 -33939025 + Lx6 LINE L1 6659 7456 -4 5 1830 352 366 104 51 chr1 163256505 163256859 -33938573 - LTR16A LTR ERVL -78 373 1 5 1830 215 286 0 0 chr1 163259144 163259200 -33936232 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1830 581 298 27 32 chr1 163259661 163259848 -33935584 + MER3 DNA MER1_type 21 206 -3 5 1830 182 37 37 0 chr1 163260425 163260452 -33934980 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1830 2200 243 60 81 chr1 163260553 163261385 -33934047 + Lx9 LINE L1 4412 5226 -621 5 1830 487 200 66 11 chr1 163261398 163261489 -33933943 + B3A SINE B2 1 96 -102 5 1830 1264 187 74 3 chr1 163261523 163261807 -33933625 + L1_Mur3 LINE L1 4216 4519 -1361 5 1830 717 147 59 0 chr1 163261807 163261943 -33933489 + Lx3A LINE L1 6838 6981 0 5 1830 22 0 0 0 chr1 163261946 163261968 -33933464 + AT_rich Low_complexity Low_complexity 1 22 0 5 1830 677 244 15 0 chr1 163262014 163262145 -33933287 + B3 SINE B2 70 202 -14 5 1830 1757 230 86 18 chr1 163262177 163262633 -33932799 + Lx9 LINE L1 5273 5759 -88 5 1830 2596 291 100 53 chr1 163262772 163262847 -33932585 + Lx9 LINE L1 6158 6228 -1416 5 1830 1583 44 38 0 chr1 163262847 163263030 -33932402 + B2_Mm1a SINE B2 2 191 -2 5 1830 2596 291 100 53 chr1 163263030 163264247 -33931185 + Lx9 LINE L1 6229 7505 -139 5 1830 438 20 0 0 chr1 163264247 163264298 -33931134 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1830 2596 291 100 53 chr1 163264298 163264386 -33931046 + Lx9 LINE L1 7506 7604 -40 5 1830 1549 68 21 0 chr1 163265441 163265631 -33929801 + B2_Mm2 SINE B2 1 194 -1 5 1830 216 0 0 0 chr1 163266056 163266080 -33929352 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1830 2143 97 18 93 chr1 163266081 163266467 -33928965 - BGLII_Mus LTR ERVK -65 357 1 5 1830 334 167 28 0 chr1 163266467 163266539 -33928893 - RMER3D-int LTR ERVK 0 2842 2769 5 1830 537 280 134 45 chr1 163266539 163266776 -33928656 + Lx8 LINE L1 6886 7158 -315 5 1830 674 72 10 0 chr1 163267682 163267779 -33927653 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 5 1830 240 292 141 13 chr1 163268615 163268771 -33926661 - L2 LINE L2 -953 2466 2291 5 1830 1683 42 5 0 chr1 163269500 163269691 -33925741 + B2_Mm2 SINE B2 1 192 -3 5 1830 339 304 58 19 chr1 163270538 163270642 -33924790 - PB1 SINE Alu -7 120 13 5 1830 1358 143 165 90 chr1 163270854 163271176 -33924256 - ORR1B1 LTR MaLR -8 386 41 5 1830 1827 75 0 0 chr1 163271436 163271677 -33923755 + RLTR22_Mus LTR ERVK 1 241 -1567 5 1830 461 210 135 39 chr1 163272321 163272425 -33923007 + PB1D10 SINE Alu 4 117 0 5 1830 530 273 86 56 chr1 163272540 163272773 -33922659 + RMER15-int LTR ERVL 4639 4878 -121 5 1830 403 244 313 11 chr1 163272793 163272975 -33922457 + RMER15 LTR ERVL 336 572 -3 5 1830 216 0 0 0 chr1 163273453 163273477 -33921955 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 5 1830 850 293 70 13 chr1 163273490 163273874 -33921558 + L1MA5 LINE L1 5422 5827 -473 5 1830 453 326 33 25 chr1 163273928 163274170 -33921262 + L1MA5 LINE L1 6049 6292 -8 5 1830 298 323 15 22 chr1 163274244 163274380 -33921052 - Charlie2a DNA MER1_type -1211 1650 1516 5 1830 446 260 145 84 chr1 163274745 163274972 -33920460 - Charlie2a DNA MER1_type -2528 333 93 5 1830 255 27 0 0 chr1 163275748 163275785 -33919647 + Lx2 LINE L1 6959 6995 -2 5 1830 423 215 18 18 chr1 163275800 163275909 -33919523 + Charlie2b DNA MER1_type 1811 1919 -863 5 1830 262 253 0 0 chr1 163275925 163276008 -33919424 + Charlie2b DNA MER1_type 2052 2134 -648 5 1830 1285 231 28 142 chr1 163276035 163276458 -33918974 - MTEa LTR MaLR -4 375 1 5 1830 26 30 0 0 chr1 163276476 163276509 -33918923 + AT_rich Low_complexity Low_complexity 1 33 0 5 1830 3288 58 33 2 chr1 163276524 163276919 -33918513 + MTB_Mm LTR MaLR 1 407 0 5 1830 22 35 0 0 chr1 163276950 163276979 -33918453 + AT_rich Low_complexity Low_complexity 1 29 0 5 1830 639 291 14 65 chr1 163277046 163277266 -33918166 - B3A SINE B2 0 216 3 5 1830 389 256 135 51 chr1 163277269 163277603 -33917829 + Charlie2b DNA MER1_type 2280 2641 -141 5 1830 1102 301 33 51 chr1 163277641 163277804 -33917628 + MTD LTR MaLR 18 180 -239 5 1830 2835 152 93 29 chr1 163277804 163278354 -33917078 - RMER4B LTR ERVK 0 585 1 5 1830 984 276 35 39 chr1 163278354 163278593 -33916839 + MTD LTR MaLR 181 405 -14 5 1830 2748 245 28 4 chr1 163278803 163279896 -33915536 - Lx5 LINE L1 -1 7049 6023 5 1830 218 156 22 22 chr1 163280087 163280133 -33915299 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 5 1830 334 236 96 36 chr1 163280198 163280365 -33915067 - Charlie2b DNA MER1_type -232 2550 2374 5 1830 802 262 21 5 chr1 163280380 163280572 -33914860 + Lx8 LINE L1 6278 6472 -1001 5 1830 1333 329 101 75 chr1 163280710 163282150 -33913282 + ERVL-int LTR ERVL 2933 4409 -1348 5 1830 262 299 39 128 chr1 163282171 163282351 -33913081 + MER21B LTR ERV1 39 202 -661 5 1830 362 320 91 77 chr1 163282334 163282608 -33912824 + MER77 LTR ERVL 192 469 -138 5 1830 624 192 97 30 chr1 163282714 163282848 -33912584 + B1_Mur3 SINE Alu 5 147 -2 5 1830 606 284 83 70 chr1 163283777 163284091 -33911341 + MLT1A LTR MaLR 5 322 -52 5 1830 324 348 36 7 chr1 163284136 163284275 -33911157 - B1F1 SINE Alu -1 148 6 5 1830 288 0 0 0 chr1 163284481 163284513 -33910919 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1830 15621 159 44 12 chr1 163285025 163288389 -33907043 + Lx4B LINE L1 3465 6966 -31 5 1830 366 23 0 0 chr1 163288389 163288432 -33907000 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1830 1123 154 81 5 chr1 163288529 163288738 -33906694 - URR1A DNA MER1_type 0 226 2 5 1830 512 241 71 28 chr1 163289050 163289191 -33906241 - B1F SINE Alu 0 149 3 5 1830 201 74 0 0 chr1 163289424 163289451 -33905981 + (CAAGA)n Simple_repeat Simple_repeat 1 27 0 5 1830 211 163 23 0 chr1 163289726 163289769 -33905663 - ID4 SINE ID -17 66 23 5 1830 186 394 40 0 chr1 163291113 163291212 -33904220 - MER5A DNA MER1_type -80 109 7 5 1830 363 127 0 0 chr1 163292281 163292352 -33903080 + Lx9 LINE L1 7573 7643 -1 5 1830 1269 56 96 0 chr1 163292574 163292752 -33902680 + B2_Mm2 SINE B2 1 195 0 5 1830 1840 177 53 20 chr1 163293636 163294034 -33901398 + MTD LTR MaLR 1 411 -8 5 1830 218 292 11 53 chr1 163294433 163294527 -33900905 + RSINE1 SINE B4 3 92 -73 5 1830 26 0 0 0 chr1 163294602 163294628 -33900804 + AT_rich Low_complexity Low_complexity 1 26 0 5 1830 422 281 172 0 chr1 163296005 163296208 -33899224 - MLT1D LTR MaLR -28 477 240 5 1830 447 332 82 48 chr1 163296301 163296595 -33898837 - LTR84b LTR ERVL -130 631 328 6 1830 395 224 216 36 chr1 163296897 163297036 -33898396 - B3 SINE B2 -5 211 48 6 1830 669 190 89 0 chr1 163297267 163297425 -33898007 - ORR1D1 LTR MaLR -2 382 211 6 1830 233 114 0 0 chr1 163297472 163297507 -33897925 - U2 snRNA snRNA -153 35 1 6 1830 4703 147 38 69 chr1 163297506 163298421 -33897011 - RMER19B LTR ERVK -15 887 1 6 1830 828 142 0 19 chr1 163298427 163298585 -33896847 - ORR1D1 LTR MaLR -219 155 1 6 1830 261 140 0 0 chr1 163298686 163298743 -33896689 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1830 379 70 0 34 chr1 163299717 163299776 -33895656 + B1_Mus2 SINE Alu 3 59 -88 6 1830 204 0 0 156 chr1 163299777 163299873 -33895559 + (CAGAG)n Simple_repeat Simple_repeat 5 85 0 6 1830 249 170 111 50 chr1 163299877 163299976 -33895456 + RLTR25B LTR ERVK 398 502 -526 6 1830 610 65 140 0 chr1 163299914 163300007 -33895425 + B1_Mm SINE Alu 42 147 0 6 1830 457 241 73 22 chr1 163300394 163300530 -33894902 + B4A SINE B4 2 144 -148 6 1830 379 213 165 9 chr1 163300689 163300798 -33894634 + ORR1E LTR MaLR 254 379 0 6 1830 2311 291 150 51 chr1 163300798 163302116 -33893316 + ORR1E-int LTR MaLR 1 1436 -73 6 1830 792 209 99 108 chr1 163302145 163302498 -33892934 + ORR1E LTR MaLR 6 355 -4 6 1830 327 49 0 0 chr1 163302577 163302618 -33892814 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6 1830 560 296 21 26 chr1 163302634 163302828 -33892604 - B3A SINE B2 -1 197 5 6 1830 2656 167 21 19 chr1 163303186 163303712 -33891720 + RLTR11A2 LTR ERVK 1 527 0 6 1830 540 0 0 0 chr1 163303987 163304047 -33891385 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1830 225 0 0 0 chr1 163304047 163304071 -33891361 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1830 261 250 0 0 chr1 163304314 163304374 -33891058 + RLTR18B LTR ERVK 448 507 -5 6 1830 551 277 35 0 chr1 163304420 163304561 -33890871 + RSINE1 SINE B4 7 152 -13 6 1830 251 343 10 39 chr1 163304776 163304879 -33890553 - Tigger5 DNA MER2_type -1 2405 2306 6 1830 771 255 81 43 chr1 163304898 163305229 -33890203 + RLTR16 LTR ERVK 1 393 -299 6 1830 226 304 85 38 chr1 163306400 163306506 -33888926 + MIRb SINE MIR 29 139 -129 6 1830 518 302 41 31 chr1 163306667 163306862 -33888570 + B3A SINE B2 1 197 -1 6 1830 655 236 58 34 chr1 163307553 163307599 -33887833 - B3 SINE B2 0 216 172 6 1830 2183 182 50 2 chr1 163307599 163308001 -33887431 - MTC LTR MaLR 0 421 1 6 1830 655 236 58 34 chr1 163308001 163308160 -33887272 - B3 SINE B2 -45 171 6 6 1830 267 175 32 0 chr1 163308160 163308223 -33887209 + T-rich Low_complexity Low_complexity 2 66 0 6 1830 396 0 0 0 chr1 163308384 163308428 -33887004 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1830 370 228 0 12 chr1 163308900 163308980 -33886452 - ID_B1 SINE B4 0 224 146 6 1830 329 262 58 10 chr1 163308908 163309012 -33886420 - B1_Mur1 SINE Alu -8 141 33 6 1830 467 91 26 0 chr1 163309659 163309736 -33885696 + (TATG)n Simple_repeat Simple_repeat 4 82 0 6 1830 616 328 87 42 chr1 163309770 163310082 -33885350 - Lx8 LINE L1 -60 7413 7088 6 1830 9767 187 33 21 chr1 163310952 163311389 -33884043 - Lx6 LINE L1 -7 7453 7011 6 1830 324 0 0 0 chr1 163311389 163311425 -33884007 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1830 9767 175 28 27 chr1 163311425 163312841 -33882591 - Lx6 LINE L1 -450 7010 5585 6 1830 384 77 0 0 chr1 163313048 163313100 -33882332 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1830 664 296 92 33 chr1 163313118 163313453 -33881979 - MLT1A0 LTR MaLR 0 365 11 6 1830 526 264 47 148 chr1 163313586 163313650 -33881782 + B4 SINE B4 2 55 -237 6 1830 1150 69 7 0 chr1 163313650 163313795 -33881637 + B1_Mus2 SINE Alu 2 147 0 6 1830 526 264 47 148 chr1 163313795 163313966 -33881466 + B4 SINE B4 56 213 -79 6 1830 834 249 137 8 chr1 163313954 163314209 -33881223 + RMER12 LTR ERVK 1035 1322 0 6 1830 204 154 0 0 chr1 163314222 163314274 -33881158 + GA-rich Low_complexity Low_complexity 2 53 0 6 1830 432 51 0 0 chr1 163314274 163314333 -33881099 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1830 297 0 0 0 chr1 163314333 163314365 -33881067 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1830 984 234 0 27 chr1 163314651 163314813 -33880619 + B3 SINE B2 1 162 -54 6 1830 477 0 0 0 chr1 163314813 163314866 -33880566 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1830 984 234 0 27 chr1 163314866 163314923 -33880509 + B3 SINE B2 163 214 -2 6 1831 353 210 86 0 chr1 163315792 163315873 -33879559 - MER63B DNA AcHobo -32 404 317 6 1831 246 160 0 0 chr1 163315970 163316020 -33879412 + CT-rich Low_complexity Low_complexity 3 52 0 6 1831 414 0 0 0 chr1 163316664 163316710 -33878722 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1831 447 19 0 0 chr1 163316710 163316761 -33878671 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1831 277 169 7 47 chr1 163317046 163317195 -33878237 + A-rich Low_complexity Low_complexity 4 146 0 6 1831 189 0 0 0 chr1 163317193 163317214 -33878218 + (CCA)n Simple_repeat Simple_repeat 3 23 0 6 1831 505 284 106 75 chr1 163317293 163317575 -33877857 + B4 SINE B4 1 291 -1 6 1831 281 197 0 14 chr1 163317593 163317665 -33877767 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1831 225 0 0 0 chr1 163317950 163317975 -33877457 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 6 1831 567 258 62 53 chr1 163319111 163319336 -33876096 - RMER20B LTR ERVK -273 354 128 6 1831 648 221 17 77 chr1 163320314 163320495 -33874937 - B3A SINE B2 -2 196 27 6 1831 443 107 13 0 chr1 163320749 163320824 -33874608 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1831 329 226 16 0 chr1 163320824 163320886 -33874546 - RSINE1 SINE B4 -100 65 3 6 1831 1389 68 17 6 chr1 163321195 163321372 -33874060 + B2_Mm2 SINE B2 2 180 -15 6 1831 195 42 0 0 chr1 163321374 163321398 -33874034 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1831 486 33 0 0 chr1 163322884 163322944 -33872488 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1831 606 310 24 58 chr1 163323287 163323578 -33871854 + B4A SINE B4 4 284 -8 6 1831 910 107 134 6 chr1 163323740 163323919 -33871513 - Lx2B LINE L1 -8 6992 6791 6 1831 750 235 53 19 chr1 163324566 163324774 -33870658 - B3 SINE B2 0 216 2 6 1831 288 196 0 26 chr1 163324991 163325068 -33870364 + MIRm SINE MIR 190 266 -10 6 1831 1526 48 16 11 chr1 163328326 163328517 -33866915 + B2_Mm2 SINE B2 1 192 -3 6 1831 766 332 10 17 chr1 163328798 163329089 -33866343 - B4 SINE B4 0 292 4 6 1831 1160 57 0 0 chr1 163329337 163329477 -33865955 + B1_Mus1 SINE Alu 2 141 -7 6 1831 186 43 0 0 chr1 163329477 163329500 -33865932 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 6 1831 195 386 29 43 chr1 163330203 163330341 -33865091 - L2 LINE L2 -413 3006 2871 6 1831 252 0 0 0 chr1 163331458 163331486 -33863946 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1831 651 250 39 146 chr1 163331767 163331973 -33863459 + B3A SINE B2 2 185 -10 6 1831 962 233 108 55 chr1 163333390 163333759 -33861673 - MLT1C LTR MaLR -21 446 61 6 1831 226 365 13 26 chr1 163333850 163333926 -33861506 - L2b LINE L2 -52 3323 3249 6 1831 1156 106 60 16 chr1 163334029 163334211 -33861221 + B2_Mm1a SINE B2 2 191 -2 6 1831 2815 141 154 42 chr1 163334774 163335299 -33860133 - RMER4B LTR ERVK -1 584 1 6 1831 23 0 0 0 chr1 163336175 163336198 -33859234 + AT_rich Low_complexity Low_complexity 1 23 0 6 1831 21 36 0 0 chr1 163337546 163337574 -33857858 + AT_rich Low_complexity Low_complexity 1 28 0 6 1831 2503 118 77 6 chr1 163337574 163337940 -33857492 - Lx4A LINE L1 0 7058 6667 6 1831 243 0 0 0 chr1 163337944 163337971 -33857461 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 6 1831 841 155 8 0 chr1 163338015 163338144 -33857288 - B3 SINE B2 -86 130 1 6 1831 347 233 105 70 chr1 163338280 163338451 -33856981 - L1MA6 LINE L1 -256 6041 5865 6 1831 336 237 67 17 chr1 163338450 163338570 -33856862 + L1MA6 LINE L1 5754 5879 -433 6 1831 733 222 20 34 chr1 163338798 163338947 -33856485 - B1_Mur1 SINE Alu -1 148 2 6 1831 718 132 7 7 chr1 163339167 163339304 -33856128 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 6 1831 436 229 40 0 chr1 163339524 163339672 -33855760 + B1F SINE Alu 2 148 -1 6 1831 332 269 11 42 chr1 163339675 163339806 -33855626 + ID4_ SINE ID 8 126 -26 6 1831 35 41 0 0 chr1 163340262 163340311 -33855121 + AT_rich Low_complexity Low_complexity 1 49 0 6 1831 301 280 66 59 chr1 163340394 163340546 -33854886 - MIRb SINE MIR 0 268 116 6 1831 1233 68 0 0 chr1 163340574 163340712 -33854720 + B1_Mm SINE Alu 1 138 -9 6 1831 198 0 0 0 chr1 163340712 163340734 -33854698 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1831 622 271 119 25 chr1 163340871 163341259 -33854173 - L1MC1 LINE L1 -1653 6132 5688 6 1831 279 288 0 15 chr1 163341483 163341550 -33853882 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1831 891 188 0 0 chr1 163341551 163341727 -33853705 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 6 1831 378 91 0 0 chr1 163342496 163342551 -33852881 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1831 259 217 12 158 chr1 163342658 163342740 -33852692 + ID4_ SINE ID 5 74 -9 6 1831 846 98 0 0 chr1 163342753 163342875 -33852557 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 6 1831 405 164 190 29 chr1 163342988 163343104 -33852328 - B1_Mur2 SINE Alu 0 117 1 6 1831 258 266 23 81 chr1 163343033 163343119 -33852313 - B4 SINE B4 -141 151 71 6 1831 288 0 0 0 chr1 163343302 163343334 -33852098 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1831 390 42 0 0 chr1 163343962 163344010 -33851422 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1831 687 245 7 20 chr1 163344396 163344542 -33850890 + RSINE1 SINE B4 5 148 -17 6 1831 342 0 0 0 chr1 163344544 163344582 -33850850 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1831 898 232 6 0 chr1 163345207 163345375 -33850057 - B4A SINE B4 0 292 124 7 1831 462 79 0 0 chr1 163345387 163345450 -33849982 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1831 762 11 0 0 chr1 163345451 163345538 -33849894 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 1831 191 254 16 0 chr1 163346294 163346357 -33849075 + CT-rich Low_complexity Low_complexity 2 65 0 7 1831 225 382 59 53 chr1 163347621 163347773 -33847659 - MER91B DNA Tip100 0 190 38 7 1831 25 51 0 0 chr1 163348242 163348281 -33847151 + AT_rich Low_complexity Low_complexity 1 39 0 7 1831 198 347 58 25 chr1 163349054 163349175 -33846257 + MIR SINE MIR 18 142 -66 7 1831 1644 201 23 107 chr1 163350069 163350583 -33844849 + RMER17B LTR ERVK 1 439 -519 7 1831 2607 213 35 43 chr1 163350575 163351207 -33844225 + RMER13B LTR ERVK 278 904 -4 7 1831 235 246 23 23 chr1 163351210 163351343 -33844089 + CT-rich Low_complexity Low_complexity 1 133 0 7 1831 249 298 197 37 chr1 163351919 163352107 -33843325 - MIR SINE MIR -36 226 9 7 1831 3164 134 75 0 chr1 163352295 163352786 -33842646 + RLTR11A LTR ERVK 1 528 0 7 1831 244 312 150 14 chr1 163352889 163353029 -33842403 + MIRc SINE MIR 1 159 -109 7 1831 870 197 35 38 chr1 163353030 163353326 -33842106 - ORR1B2 LTR MaLR 0 327 32 7 1831 859 181 53 53 chr1 163353724 163353911 -33841521 - ORR1B2 LTR MaLR -189 189 3 7 1831 265 374 82 0 chr1 163355119 163355266 -33840166 + MLT2F LTR ERVL 271 429 -234 7 1831 318 299 200 30 chr1 163355596 163355796 -33839636 - MLT1D LTR MaLR -271 234 1 7 1831 266 229 57 0 chr1 163355898 163355968 -33839464 + L1M7 LINE L1 1578 1651 -4567 7 1831 1734 170 47 118 chr1 163357617 163357858 -33837574 - MTC LTR MaLR 0 421 206 7 1831 3548 74 0 11 chr1 163357858 163358308 -33837124 - L1Md_F2 LINE L1 -10 6572 6128 7 1831 1734 170 47 118 chr1 163358308 163358447 -33836985 - MTC LTR MaLR -216 205 68 7 1831 26 0 0 0 chr1 163358451 163358477 -33836955 + AT_rich Low_complexity Low_complexity 1 26 0 7 1831 1425 274 59 40 chr1 163358484 163358962 -33836470 - Lx5 LINE L1 -12 7038 6552 7 1831 486 332 39 12 chr1 163359004 163359260 -33836172 + L1M3c LINE L1 1363 1625 -4516 7 1831 14667 29 0 0 chr1 163359271 163361625 -33833807 - L1Md_T LINE L1 0 6582 4229 7 1831 403 314 40 52 chr1 163361617 163361866 -33833566 + L1M4c LINE L1 1372 1617 -4767 7 1831 311 343 66 68 chr1 163362081 163362535 -33832897 + L1M4c LINE L1 2002 2454 -3930 7 1831 1323 259 112 28 chr1 163362574 163363211 -33832221 + L1M4c LINE L1 2703 3392 -2987 7 1831 1347 72 0 0 chr1 163363541 163363721 -33831711 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 7 1831 464 17 33 0 chr1 163363721 163363781 -33831651 + (TCTCC)n Simple_repeat Simple_repeat 2 63 0 7 1831 1049 114 12 0 chr1 163363782 163363949 -33831483 + (TTTC)n Simple_repeat Simple_repeat 3 171 0 7 1831 848 10 10 0 chr1 163363949 163364050 -33831382 + (TTC)n Simple_repeat Simple_repeat 2 103 0 7 1831 1145 271 90 47 chr1 163364288 163365051 -33830381 + L1M4c LINE L1 3385 4180 -2196 7 1831 255 103 0 0 chr1 163365076 163365115 -33830317 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 7 1831 900 242 24 38 chr1 163365137 163365347 -33830085 + B3 SINE B2 9 215 -1 7 1831 351 268 63 31 chr1 163366938 163367065 -33828367 + Tigger7 DNA MER2_type 182 312 -2179 7 1831 242 260 40 0 chr1 163367155 163367205 -33828227 + B1_Mur4 SINE Alu 6 57 -93 7 1831 356 281 47 0 chr1 163367257 163367385 -33828047 + Tigger7 DNA MER2_type 2236 2368 -123 7 1831 4511 89 19 100 chr1 163368271 163369081 -33826351 - RMER17A LTR ERVK -7 744 1 7 1831 199 297 20 39 chr1 163369175 163369275 -33826157 + MIR3 SINE MIR 75 163 -45 7 1831 1039 120 21 74 chr1 163369548 163369737 -33825695 - URR1B DNA MER1_type -1 224 46 7 1831 456 255 81 81 chr1 163369737 163369768 -33825664 + CYRA11_Mm Unknown Y-chromosome 172 391 -226 7 1831 313 347 27 34 chr1 163371104 163371253 -33824179 + ORR1E LTR MaLR 2 149 -210 7 1831 247 308 66 41 chr1 163371824 163371946 -33823486 - LTR78 LTR ERV1 -14 1290 1166 7 1831 405 0 0 0 chr1 163372383 163372428 -33823004 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1831 22 0 0 0 chr1 163372592 163372614 -33822818 + AT_rich Low_complexity Low_complexity 1 22 0 7 1831 403 179 8 104 chr1 163373261 163373386 -33822046 - RMER1B Other Other -24 1042 930 7 1831 281 322 31 56 chr1 163373638 163373799 -33821633 - RMER10B LTR ERVL -10 388 232 7 1831 534 70 0 0 chr1 163374585 163374656 -33820776 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1831 402 298 68 80 chr1 163376679 163377227 -33818205 + L1M2 LINE L1 1870 2411 -4438 7 1831 2478 179 69 63 chr1 163377227 163377752 -33817680 - RLTR24 LTR ERV1 -1 528 1 7 1831 402 298 68 80 chr1 163377752 163377904 -33817528 + L1M2 LINE L1 2412 2562 -4287 7 1831 471 18 0 0 chr1 163378122 163378178 -33817254 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1831 4998 133 45 23 chr1 163378178 163378263 -33817169 - RMER12 LTR ERVK -434 888 806 7 1831 209 0 97 0 chr1 163378263 163378294 -33817138 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 7 1831 4998 133 45 23 chr1 163378294 163378827 -33816605 - RMER12 LTR ERVK -517 805 262 7 1831 216 0 0 0 chr1 163378827 163378851 -33816581 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 7 1831 4998 133 45 23 chr1 163378851 163379100 -33816332 - RMER12 LTR ERVK -1061 261 2 7 1831 615 286 73 22 chr1 163379100 163379461 -33815971 + L1M2 LINE L1 4017 4404 -2444 7 1831 602 57 0 162 chr1 163379463 163379568 -33815864 + B1_Mm SINE Alu 60 147 0 7 1831 270 125 0 0 chr1 163379568 163379616 -33815816 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1831 511 275 10 7 chr1 163379698 163379865 -33815567 + L1M2 LINE L1 5334 5507 -1338 7 1831 2088 178 32 76 chr1 163380203 163380665 -33814767 + RLTR31A_Mm LTR ERVK 1 442 -142 7 1831 419 226 164 42 chr1 163383530 163383725 -33811707 + LTR48B LTR ERV1 3 266 -521 7 1831 625 315 11 11 chr1 163383931 163384114 -33811318 - B3A SINE B2 -14 184 2 7 1831 1495 147 37 4 chr1 163384213 163384459 -33810973 + ORR1C2 LTR MaLR 1 254 -130 7 1831 1276 238 174 36 chr1 163384476 163384992 -33810440 + ORR1C2-int LTR MaLR 1 587 -783 7 1831 7743 93 49 5 chr1 163384993 163386121 -33809311 + Lx3_Mus LINE L1 4740 5926 -1083 7 1831 1010 143 6 0 chr1 163386121 163386296 -33809136 + (GGA)n Simple_repeat Simple_repeat 3 178 0 7 1831 4870 98 50 4 chr1 163386296 163386690 -33808742 + Lx3_Mus LINE L1 5927 6338 -671 7 1831 17090 80 58 7 chr1 163386689 163387551 -33807881 - L1_Mur1 LINE L1 -1488 4398 3491 7 1831 225 0 0 0 chr1 163387551 163387576 -33807856 + (TTG)n Simple_repeat Simple_repeat 3 27 0 7 1831 17090 94 44 8 chr1 163387576 163390398 -33805034 - L1_Mur1 LINE L1 -2396 3490 218 7 1831 297 0 0 0 chr1 163390408 163390441 -33804991 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7 1831 753 93 0 0 chr1 163390477 163390584 -33804848 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 7 1831 4196 202 96 48 chr1 163390691 163391983 -33803449 + RMER12 LTR ERVK 1 1848 0 7 1831 1083 121 4 8 chr1 163392127 163392369 -33803063 + (CA)n Simple_repeat Simple_repeat 1 240 0 7 1831 513 32 0 0 chr1 163393076 163393139 -33802293 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1831 180 0 0 0 chr1 163394251 163394271 -33801161 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1831 835 294 158 13 chr1 163395099 163395409 -33800023 + ORR1E LTR MaLR 5 359 0 7 1831 326 240 171 76 chr1 163395472 163395630 -33799802 - Arthur1 DNA Tip100 -252 3695 3523 7 1831 180 0 0 0 chr1 163395878 163395898 -33799534 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 7 1831 423 352 35 108 chr1 163396319 163396577 -33798855 + MER115 DNA Tip100 331 569 -124 7 1831 904 283 0 0 chr1 163396807 163397019 -33798413 + B3 SINE B2 5 216 0 7 1831 1404 180 152 18 chr1 163398554 163398882 -33796550 + ORR1D1 LTR MaLR 3 374 0 7 1831 266 0 29 0 chr1 163398973 163399007 -33796425 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1831 355 354 30 0 chr1 163399016 163399100 -33796332 - B1_Mur1 SINE Alu -35 114 28 7 1831 545 221 17 49 chr1 163399100 163399242 -33796190 + MT2B LTR ERVL 3 130 -471 7 1831 491 207 267 0 chr1 163399267 163399402 -33796030 + MT2B LTR ERVL 99 269 -264 7 1831 2152 108 10 16 chr1 163399402 163399713 -33795719 + RLTR27 LTR ERVK 1 309 0 7 1831 345 60 7 11 chr1 163399737 163399791 -33795641 + RLTR10-int LTR ERVK 162 267 -7314 7 1831 428 216 41 163 chr1 163399823 163400044 -33795388 + RLTR10-int LTR ERVK 655 848 -1139 7 1831 278 321 0 36 chr1 163400044 163400154 -33795278 + A-rich Low_complexity Low_complexity 5 110 0 7 1831 222 37 0 0 chr1 163400345 163400372 -33795060 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 7 1831 445 297 10 10 chr1 163400430 163400681 -33794751 + IAPLTR3-int LTR ERVK 3469 3946 -2875 7 1831 809 262 109 31 chr1 163400710 163400966 -33794466 + MT2B LTR ERVL 326 601 0 7 1831 232 305 0 0 chr1 163401838 163401933 -33793499 + L1Md_F LINE L1 57 151 -6368 7 1831 4957 118 59 6 chr1 163401965 163403633 -33791799 + L1_Mus1 LINE L1 147 1904 -3979 7 1831 10964 77 10 3 chr1 163403632 163405905 -33789527 + L1_Mus1 LINE L1 4279 6567 0 7 1831 624 55 0 52 chr1 163406168 163406284 -33789148 + (GGAGA)n Simple_repeat Simple_repeat 2 111 0 7 1831 1282 188 52 66 chr1 163406335 163406588 -33788844 - L1_Rod LINE L1 -10 5837 5572 7 1831 432 0 0 0 chr1 163406588 163406636 -33788796 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1831 1282 188 52 66 chr1 163406636 163406729 -33788703 - L1_Rod LINE L1 -276 5571 5496 7 1831 481 212 44 9 chr1 163406720 163406834 -33788598 + Lx9 LINE L1 6765 6882 -762 7 1831 1118 35 0 0 chr1 163408286 163408428 -33787004 + L1Md_A LINE L1 6441 6582 0 7 1831 359 261 114 30 chr1 163408669 163408835 -33786597 - L1M4 LINE L1 -690 5484 5305 7 1831 354 264 226 21 chr1 163408840 163409177 -33786255 - L1M4 LINE L1 -1028 5118 4713 7 1831 211 297 135 29 chr1 163409212 163409316 -33786116 - L2 LINE L2 -925 2494 2380 7 1831 1270 250 103 29 chr1 163410885 163410914 -33784518 - MTEa LTR MaLR 0 379 354 7 1831 2063 171 85 28 chr1 163410914 163411312 -33784120 + MTC LTR MaLR 1 421 0 7 1831 1270 250 103 29 chr1 163411312 163411632 -33783800 - MTEa LTR MaLR -26 353 4 7 1831 336 329 50 0 chr1 163411633 163411773 -33783659 + MIR SINE MIR 45 191 -71 7 1831 384 304 26 30 chr1 163411922 163412071 -33783361 + MLT1A0 LTR MaLR 218 374 0 7 1831 220 318 0 0 chr1 163413004 163413048 -33782384 + RSINE1 SINE B4 6 49 -116 7 1831 615 14 0 0 chr1 163413107 163413179 -33782253 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 1831 369 324 118 26 chr1 163414037 163414453 -33780979 + MLT1D LTR MaLR 10 505 0 7 1831 26 30 0 0 chr1 163414816 163414849 -33780583 + AT_rich Low_complexity Low_complexity 1 33 0 7 1831 474 18 0 0 chr1 163415472 163415527 -33779905 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1831 204 284 67 22 chr1 163418181 163418250 -33777182 + L3b LINE CR1 156 229 -253 7 1831 288 0 0 0 chr1 163418250 163418282 -33777150 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 7 1831 204 284 67 22 chr1 163418282 163418302 -33777130 + L3b LINE CR1 230 249 -233 7 1831 1502 254 140 40 chr1 163419137 163419809 -33775623 + Lx8 LINE L1 6536 7274 -199 7 1831 215 265 0 29 chr1 163420136 163420206 -33775226 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 8 1831 323 256 12 49 chr1 163420225 163420307 -33775125 - ID SINE ID -135 89 11 8 1831 613 176 17 17 chr1 163420408 163420581 -33774851 + CT-rich Low_complexity Low_complexity 3 175 0 8 1831 310 205 13 0 chr1 163421541 163421619 -33773813 + Lx9 LINE L1 7559 7637 -7 8 1831 3295 97 10 16 chr1 163423111 163423605 -33771827 - L1_Mus3 LINE L1 -3 6635 6145 8 1831 1303 96 15 0 chr1 163423605 163423802 -33771630 + L1_Mus3 LINE L1 5937 6136 -502 8 1831 758 266 33 14 chr1 163423952 163424162 -33771270 - B3 SINE B2 -2 214 1 8 1831 306 0 0 0 chr1 163424219 163424253 -33771179 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1831 288 344 32 55 chr1 163425416 163425599 -33769833 + MIRc SINE MIR 1 174 -94 8 1831 189 235 59 0 chr1 163425674 163425725 -33769707 - L2c LINE L2 -198 3189 3136 8 1831 286 132 12 35 chr1 163425898 163425984 -33769448 + A-rich Low_complexity Low_complexity 2 85 0 8 1831 198 0 0 0 chr1 163427014 163427036 -33768396 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1831 225 0 0 0 chr1 163427523 163427548 -33767884 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 1831 324 312 129 5 chr1 163427560 163427753 -33767679 + MIR SINE MIR 46 262 0 8 1831 284 336 131 17 chr1 163429009 163429245 -33766187 + L2 LINE L2 2372 2634 -785 8 1831 297 307 40 0 chr1 163429250 163429325 -33766107 - PB1D10 SINE Alu -26 91 14 8 1831 231 355 46 51 chr1 163429337 163429512 -33765920 + L2 LINE L2 2671 2844 -575 8 1831 235 260 85 57 chr1 163429737 163429843 -33765589 - Charlie7 DNA MER1_type -2461 151 43 8 1831 1148 123 37 0 chr1 163430078 163430265 -33765167 - B2_Mm2 SINE B2 0 195 2 8 1831 1241 249 32 90 chr1 163431137 163431334 -33764098 - MTE2a LTR MaLR 0 379 188 8 1831 3252 122 20 0 chr1 163431334 163431824 -33763608 - Lx LINE L1 -3 6651 6152 8 1831 1241 249 32 90 chr1 163431824 163432028 -33763404 - MTE2a LTR MaLR -192 187 1 8 1831 29 28 0 0 chr1 163432749 163432785 -33762647 + AT_rich Low_complexity Low_complexity 1 36 0 8 1831 211 300 60 0 chr1 163432905 163432955 -33762477 + AluG_3 SINE Alu 166 218 -93 8 1831 180 349 39 46 chr1 163432994 163433147 -33762285 - L2a LINE L2 -12 3414 3263 8 1831 33 25 0 0 chr1 163435243 163435283 -33760149 + AT_rich Low_complexity Low_complexity 1 40 0 8 1831 279 254 0 0 chr1 163435523 163435578 -33759854 + MER63B DNA AcHobo 337 391 -45 8 1831 630 182 0 28 chr1 163435619 163435800 -33759632 + C-rich Low_complexity Low_complexity 4 179 0 8 1831 924 319 25 28 chr1 163435907 163436191 -33759241 - B4A SINE B4 0 292 10 8 1831 2777 271 107 19 chr1 163438937 163439916 -33755516 + Lx8 LINE L1 6352 7416 -57 8 1831 1194 162 12 33 chr1 163440025 163440267 -33755165 - Lx5 LINE L1 -671 6379 6143 8 1831 2818 178 27 73 chr1 163440278 163440951 -33754481 + Lx4B LINE L1 6409 7050 -8 8 1831 248 240 0 0 chr1 163440962 163441012 -33754420 + GA-rich Low_complexity Low_complexity 2 51 0 8 1831 2515 108 23 9 chr1 163441660 163442088 -33753344 + L1_Mur1 LINE L1 2377 2810 -3076 8 1831 721 216 53 23 chr1 163442651 163442822 -33752610 - MTEb LTR MaLR 0 379 204 8 1831 11055 98 13 5 chr1 163442832 163445365 -33750067 - L1_Mus3 LINE L1 -1 6637 4082 8 1831 917 279 52 16 chr1 163445365 163445616 -33749816 - MTE2b LTR MaLR -117 262 3 8 1831 214 342 1 13 chr1 163445646 163445736 -33749696 - MIR SINE MIR -125 143 54 8 1831 232 225 14 14 chr1 163446123 163446195 -33749237 + T-rich Low_complexity Low_complexity 6 77 0 8 1832 932 172 194 0 chr1 163447188 163447368 -33748064 + B3 SINE B2 1 215 -1 8 1832 252 308 159 33 chr1 163448127 163448278 -33747154 - MLT1A LTR MaLR -50 324 155 8 1832 771 195 44 0 chr1 163448416 163448575 -33746857 - Lx9 LINE L1 -181 7463 7298 8 1832 498 200 138 24 chr1 163448637 163448760 -33746672 - MTD LTR MaLR 0 419 283 8 1832 297 0 0 0 chr1 163448767 163448800 -33746632 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1832 304 271 133 142 chr1 163448901 163449112 -33746320 - MTD LTR MaLR -192 227 19 8 1832 353 250 58 26 chr1 163449232 163449388 -33746044 - L1MC LINE L1 -1979 5806 5646 8 1832 339 25 0 0 chr1 163449388 163449428 -33746004 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 1832 183 290 81 0 chr1 163449855 163449917 -33745515 - L3 LINE CR1 -731 3758 3692 8 1832 276 286 262 19 chr1 163450172 163450279 -33745153 - RSINE1 SINE B4 -18 147 15 8 1832 296 304 29 0 chr1 163450586 163450688 -33744744 - MLT1A0 LTR MaLR -5 360 256 8 1832 21 36 0 0 chr1 163451089 163451117 -33744315 + AT_rich Low_complexity Low_complexity 1 28 0 8 1832 22 35 0 0 chr1 163451258 163451287 -33744145 + AT_rich Low_complexity Low_complexity 1 29 0 8 1832 21 36 0 0 chr1 163451433 163451461 -33743971 + AT_rich Low_complexity Low_complexity 1 28 0 8 1832 223 218 0 18 chr1 163451908 163451964 -33743468 + T-rich Low_complexity Low_complexity 5 59 0 8 1832 222 225 0 0 chr1 163452135 163452175 -33743257 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 8 1832 343 176 0 42 chr1 163452175 163452246 -33743186 + HAL1-3A_ME LINE L1 1975 2042 -816 8 1832 833 107 0 8 chr1 163452896 163453028 -33742404 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 8 1832 228 240 40 0 chr1 163453582 163453657 -33741775 + L1_Rod LINE L1 2129 2206 -3641 8 1832 2153 77 7 0 chr1 163453951 163454237 -33741195 + L1_Mus3 LINE L1 6348 6635 -3 8 1832 3093 126 36 0 chr1 163454293 163454768 -33740664 + RLTR33 LTR ERVK 187 678 0 8 1832 2221 276 121 64 chr1 163454795 163456035 -33739397 + L1MB1 LINE L1 3036 4376 -1767 8 1832 1159 51 0 0 chr1 163456035 163456172 -33739260 + B1_Mm SINE Alu 1 137 -10 8 1832 2221 276 121 64 chr1 163456172 163456970 -33738462 + L1MB1 LINE L1 4377 5189 -954 8 1832 516 311 101 16 chr1 163457073 163457488 -33737944 + L1MB1 LINE L1 5523 5974 -317 8 1832 390 219 76 0 chr1 163457532 163457651 -33737781 + L1MB1 LINE L1 6044 6171 -120 8 1832 1262 155 70 25 chr1 163459228 163459472 -33735960 - RLTR22_Mur LTR ERVK -2 1846 1592 8 1832 4383 133 50 19 chr1 163459702 163460483 -33734949 - RLTR22_Mur LTR ERVK -1043 805 1 8 1832 2123 107 72 0 chr1 163460633 163460951 -33734481 - Lx2 LINE L1 -2 6995 6655 8 1832 299 309 25 0 chr1 163461093 163461187 -33734245 - ID4_ SINE ID -55 97 2 8 1832 1092 206 168 31 chr1 163461399 163461600 -33733832 - ORR1D1 LTR MaLR -5 369 146 8 1832 455 203 31 0 chr1 163461600 163461728 -33733704 - Lx9 LINE L1 -8 7636 7505 8 1832 1092 206 168 31 chr1 163461728 163461817 -33733615 - ORR1D1 LTR MaLR -229 145 39 8 1832 3812 30 2 78 chr1 163462309 163462823 -33732609 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1832 958 110 25 85 chr1 163462824 163463023 -33732409 + IAPEz-int LTR ERVK 9 195 -6286 8 1832 248 302 0 0 chr1 163463023 163463076 -33732356 + RLTR27 LTR ERVK 223 275 -34 8 1832 3329 61 1 16 chr1 163463076 163463654 -33731778 + IAPEz-int LTR ERVK 168 662 -5819 8 1832 942 42 0 0 chr1 163463654 163463773 -33731659 + IAPEz-int LTR ERVK 1359 1477 -5004 8 1832 1778 95 8 0 chr1 163463768 163464020 -33731412 + IAPEz-int LTR ERVK 2244 2497 -5183 8 1832 13554 56 12 5 chr1 163464038 163465827 -33729605 + IAPEz-int LTR ERVK 4678 6479 -2 8 1832 3866 40 8 11 chr1 163465829 163466305 -33729127 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1832 23 33 0 0 chr1 163468608 163468638 -33726794 + AT_rich Low_complexity Low_complexity 1 30 0 8 1832 773 294 63 8 chr1 163469112 163469349 -33726083 - MTE2b LTR MaLR -123 256 7 8 1832 310 217 50 0 chr1 163469375 163469435 -33725997 - ORR1D1 LTR MaLR -316 63 1 8 1832 204 222 0 22 chr1 163469596 163469642 -33725790 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 8 1832 552 189 106 0 chr1 163470082 163470214 -33725218 + Lx9 LINE L1 6943 7088 -556 8 1832 693 124 8 8 chr1 163470697 163470819 -33724613 + L1VL1 LINE L1 145 266 -6156 8 1832 561 184 0 0 chr1 163470819 163470933 -33724499 + L1Md_F LINE L1 383 496 -6023 8 1832 32929 63 15 2 chr1 163470931 163472132 -33723300 - L1Md_F2 LINE L1 -123 6459 5234 8 1832 812 85 8 0 chr1 163472132 163472250 -33723182 + (TCCC)n Simple_repeat Simple_repeat 3 121 0 8 1832 330 45 0 0 chr1 163472250 163472294 -33723138 + (TA)n Simple_repeat Simple_repeat 1 44 0 8 1832 32929 80 17 5 chr1 163472294 163477134 -33718298 - L1Md_F2 LINE L1 -650 5233 352 8 1832 2279 169 59 3 chr1 163478305 163478696 -33716736 - MTC LTR MaLR -8 413 1 8 1832 183 80 0 0 chr1 163478941 163478966 -33716466 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 8 1832 348 380 24 19 chr1 163480317 163480563 -33714869 + MLT1A1 LTR MaLR 1 244 -121 8 1832 204 40 0 0 chr1 163481748 163481773 -33713659 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 8 1832 546 57 0 0 chr1 163481773 163481842 -33713590 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 8 1832 448 187 0 0 chr1 163482706 163482781 -33712651 - 5S rRNA rRNA -30 91 17 8 1832 336 273 150 7 chr1 163482845 163482985 -33712447 + MER2 DNA MER2_type 1 160 -185 8 1832 203 224 54 34 chr1 163483046 163483194 -33712238 + (TA)n Simple_repeat Simple_repeat 2 152 0 8 1832 227 386 133 12 chr1 163484392 163484633 -33710799 - L2b LINE L2 -196 3179 2910 8 1832 203 282 11 103 chr1 163484651 163484738 -33710694 - L2b LINE L2 -579 2840 2762 8 1832 707 185 0 7 chr1 163484750 163484902 -33710530 + CT-rich Low_complexity Low_complexity 4 154 0 8 1832 306 195 0 54 chr1 163485759 163485873 -33709559 + (TATG)n Simple_repeat Simple_repeat 2 108 0 8 1832 3428 30 0 0 chr1 163485873 163486269 -33709163 - MTA_Mm LTR MaLR 0 396 1 8 1832 306 195 0 54 chr1 163486269 163486284 -33709148 + (TATG)n Simple_repeat Simple_repeat 3 17 0 8 1832 782 289 55 36 chr1 163486284 163486611 -33708821 - MLT2D LTR ERVL -40 357 1 8 1832 21 57 0 0 chr1 163487182 163487217 -33708215 + AT_rich Low_complexity Low_complexity 1 35 0 8 1832 274 291 112 26 chr1 163487268 163487420 -33708012 - Lx8 LINE L1 -70 7403 7239 8 1832 654 300 13 17 chr1 163487422 163487653 -33707779 + Lx8 LINE L1 7013 7242 -231 8 1832 1575 208 96 6 chr1 163487882 163488216 -33707216 + ORR1D1 LTR MaLR 3 366 -8 8 1832 702 246 14 21 chr1 163488342 163488487 -33706945 + B1F2 SINE Alu 6 149 0 8 1832 677 234 56 87 chr1 163489155 163489445 -33705987 - MTE2b LTR MaLR 0 379 4 8 1832 3507 82 21 2 chr1 163489482 163489957 -33705475 - Lx3A LINE L1 -3 6978 6495 8 1832 269 314 24 48 chr1 163490079 163490203 -33705229 - L2a LINE L2 0 3426 3306 8 1832 639 252 14 0 chr1 163490380 163490527 -33704905 + B1_Mur2 SINE Alu 1 149 0 8 1832 314 290 89 0 chr1 163490660 163490784 -33704648 - L2a LINE L2 -1357 2062 1928 8 1832 317 296 108 20 chr1 163490818 163490966 -33704466 + L1ME3A LINE L1 5415 5575 -665 8 1832 278 333 39 53 chr1 163491006 163491291 -33704141 + L1ME3A LINE L1 5645 5925 -248 8 1832 4822 150 25 0 chr1 163491806 163492599 -33702833 + Lx2 LINE L1 6185 6997 0 8 1832 1009 91 0 0 chr1 163492823 163492955 -33702477 - B1_Mus1 SINE Alu -10 138 7 8 1832 24 53 0 0 chr1 163492961 163492999 -33702433 + AT_rich Low_complexity Low_complexity 1 38 0 9 1832 528 16 0 0 chr1 163493517 163493578 -33701854 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 1832 3074 82 7 0 chr1 163493578 163493995 -33701437 - BGLII LTR ERVK -1 420 1 9 1832 282 217 0 0 chr1 163494034 163494103 -33701329 + T-rich Low_complexity Low_complexity 1 69 0 9 1832 21 0 0 0 chr1 163494202 163494223 -33701209 + AT_rich Low_complexity Low_complexity 1 21 0 9 1832 323 169 0 63 chr1 163494232 163494295 -33701137 + B1_Mus2 SINE Alu 1 59 -88 9 1832 941 162 0 13 chr1 163494295 163494451 -33700981 + (CAGAGA)n Simple_repeat Simple_repeat 5 158 0 9 1832 695 125 19 0 chr1 163494451 163494555 -33700877 + B1_Mm SINE Alu 42 147 0 9 1832 916 179 35 15 chr1 163494696 163494895 -33700537 + Lx7 LINE L1 7478 7680 -16 9 1832 313 279 13 0 chr1 163495021 163495100 -33700332 + ID4 SINE ID 3 82 -1 9 1832 202 259 17 17 chr1 163495102 163495161 -33700271 + GA-rich Low_complexity Low_complexity 5 63 0 9 1832 5739 80 18 7 chr1 163495367 163496209 -33699223 + L1_Mur1 LINE L1 4715 5565 -321 9 1832 429 271 124 29 chr1 163496249 163496386 -33699046 + B3A SINE B2 1 150 -48 9 1832 255 61 0 0 chr1 163496661 163496694 -33698738 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 9 1832 1031 79 0 6 chr1 163497082 163497247 -33698185 + (TC)n Simple_repeat Simple_repeat 2 165 0 9 1832 270 0 0 0 chr1 163497247 163497276 -33698156 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1832 341 321 46 19 chr1 163497409 163497517 -33697915 - B4A SINE B4 -155 137 27 9 1832 590 231 0 0 chr1 163498119 163498223 -33697209 + RSINE1 SINE B4 4 107 -58 9 1832 234 0 0 0 chr1 163498251 163498277 -33697155 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1832 950 103 0 7 chr1 163498719 163498865 -33696567 + (GGGAGA)n Simple_repeat Simple_repeat 5 149 0 9 1832 814 303 42 54 chr1 163498900 163499141 -33696291 + B4A SINE B4 55 292 0 9 1832 260 83 0 20 chr1 163499151 163499200 -33696232 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1832 416 327 40 69 chr1 163499255 163499429 -33696003 + B3A SINE B2 44 212 -4 9 1832 783 148 78 0 chr1 163500695 163500837 -33694595 - B3 SINE B2 -6 210 58 1 1832 201 143 48 0 chr1 163501362 163501404 -33694028 + A-rich Low_complexity Low_complexity 2 45 0 2 1832 604 106 0 96 chr1 163501477 163501676 -33693756 + CT-rich Low_complexity Low_complexity 1 180 0 3 1832 200 381 0 0 chr1 163502820 163502883 -33692549 + L2b LINE L2 3302 3364 -11 4 1832 386 161 92 59 chr1 163503185 163503304 -33692128 + Lx9 LINE L1 7521 7643 -1 5 1832 218 258 16 31 chr1 163503313 163503377 -33692055 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6 1832 350 266 0 0 chr1 163503407 163503471 -33691961 - RSINE1 SINE B4 -17 148 85 7 1832 1000 276 4 0 chr1 163503535 163503767 -33691665 - B4A SINE B4 -59 233 1 8 1832 637 195 29 6 chr1 163503883 163504058 -33691374 + (CATA)n Simple_repeat Simple_repeat 2 180 0 9 1832 296 120 20 20 chr1 163504059 163504110 -33691322 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1832 760 155 78 0 chr1 163504952 163505094 -33690338 - B3 SINE B2 -6 210 58 1 1832 464 280 174 15 chr1 163507519 163507715 -33687717 - RMER15 LTR ERVL -2 573 347 1 1832 249 163 0 0 chr1 163509398 163509447 -33685985 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1832 284 301 14 0 chr1 163509448 163509521 -33685911 - B4A SINE B4 -2 290 217 1 1832 274 386 0 40 chr1 163509877 163510028 -33685404 - Lx8 LINE L1 -366 7107 6963 1 1832 652 294 7 0 chr1 163510032 163510178 -33685254 - B4A SINE B4 -83 209 63 1 1832 340 366 162 14 chr1 163510634 163510997 -33684435 + L2 LINE L2 188 604 -2815 1 1832 386 322 128 50 chr1 163511056 163511385 -33684047 + MLT1G1 LTR MaLR 11 411 -168 1 1832 870 341 79 71 chr1 163511407 163512015 -33683417 - MER21B LTR ERV1 -60 803 191 1 1832 4467 187 73 16 chr1 163512041 163513095 -33682337 + Lx6 LINE L1 310 1423 -4457 1 1832 221 0 35 0 chr1 163513095 163513124 -33682308 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1832 3988 168 40 14 chr1 163513124 163513729 -33681703 + Lx6 LINE L1 1424 2051 -3829 1 1832 9876 179 44 75 chr1 163513732 163517490 -33677942 + Lx6 LINE L1 3670 7324 -136 1 1832 1310 186 50 15 chr1 163517513 163517775 -33677657 - Lx5 LINE L1 -2 7048 6778 2 1832 3703 147 59 5 chr1 163517767 163518663 -33676769 + Lx5 LINE L1 5310 6265 -785 2 1832 2525 201 81 76 chr1 163519129 163519830 -33675602 + Lx7 LINE L1 6976 7680 -16 2 1832 387 60 0 0 chr1 163520175 163520225 -33675207 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1832 454 265 106 42 chr1 163521157 163521346 -33674086 - RMER15 LTR ERVL -18 557 357 2 1832 336 102 0 0 chr1 163521346 163521395 -33674037 + (ATG)n Simple_repeat Simple_repeat 1 49 0 2 1832 247 226 97 0 chr1 163521400 163521462 -33673970 - RLTR18 LTR ERVK -1 615 548 2 1832 2608 175 11 9 chr1 163521462 163521923 -33673509 - RLTR18-int LTR ERVK -19 5342 4881 2 1832 258 105 0 0 chr1 163522823 163522861 -33672571 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1832 450 195 32 8 chr1 163523836 163523960 -33671472 - Lx9 LINE L1 0 7644 7518 2 1832 662 313 10 20 chr1 163524251 163524453 -33670979 + RMER15 LTR ERVL 336 535 -40 3 1832 2215 209 48 70 chr1 163524594 163525155 -33670277 - RMER15 LTR ERVL 0 575 27 3 1832 1247 152 68 50 chr1 163525168 163525390 -33670042 - URR1A DNA MER1_type 0 226 1 3 1832 1153 174 32 14 chr1 163525430 163525646 -33669786 + RLTR24 LTR ERV1 1 220 -309 3 1832 630 224 37 91 chr1 163525638 163525882 -33669550 - RMER17C LTR ERVK -32 378 85 3 1832 462 18 0 0 chr1 163525882 163525937 -33669495 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1832 426 205 64 127 chr1 163525937 163526012 -33669420 - RMER17C LTR ERVK -326 84 1 3 1832 1195 201 86 45 chr1 163526017 163526309 -33669123 + RLTR24 LTR ERV1 226 529 0 3 1832 261 0 0 0 chr1 163527505 163527534 -33667898 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1832 795 141 180 24 chr1 163528730 163528897 -33666535 + B3 SINE B2 24 216 0 3 1832 969 218 29 110 chr1 163529004 163529179 -33666253 - MTEb LTR MaLR 0 379 206 3 1832 1281 55 0 0 chr1 163529179 163529325 -33666107 + B1_Mus1 SINE Alu 3 148 0 3 1832 1158 122 0 0 chr1 163529329 163529509 -33665923 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1832 969 218 29 110 chr1 163529509 163529637 -33665795 - MTEb LTR MaLR -174 205 96 3 1832 232 87 61 0 chr1 163529672 163529716 -33665716 - MTD LTR MaLR -3 418 369 4 1832 482 79 13 0 chr1 163529716 163529792 -33665640 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1832 25 0 0 0 chr1 163529792 163529817 -33665615 + AT_rich Low_complexity Low_complexity 1 25 0 4 1832 3125 143 75 3 chr1 163529997 163530625 -33664807 + RMER13A LTR ERVK 1 734 -126 4 1832 1040 149 36 0 chr1 163531062 163531230 -33664202 - URR1A DNA MER1_type -51 175 2 4 1832 376 294 109 34 chr1 163531372 163531698 -33663734 + MLT2B4 LTR ERVL 16 369 -187 4 1832 25 75 0 0 chr1 163531782 163531835 -33663597 + AT_rich Low_complexity Low_complexity 1 53 0 4 1832 521 300 35 64 chr1 163531928 163532131 -33663301 - B3A SINE B2 -1 197 1 4 1832 691 78 0 0 chr1 163532732 163532822 -33662610 + B2_Mm2 SINE B2 3 92 -103 4 1832 378 0 0 0 chr1 163532845 163532887 -33662545 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 1832 1647 58 0 10 chr1 163532948 163533156 -33662276 + L1Md_F2 LINE L1 6377 6582 0 5 1832 963 324 45 50 chr1 163533343 163533827 -33661605 - RMER5 LTR ERV1 0 534 53 5 1832 394 354 108 13 chr1 163534085 163534317 -33661115 - MER21B LTR ERV1 -143 720 467 5 1832 202 73 24 24 chr1 163534392 163534434 -33660998 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1832 865 305 91 23 chr1 163534575 163535146 -33660286 + L1MA4 LINE L1 3986 4595 -1548 5 1832 1222 288 69 60 chr1 163535661 163536991 -33658441 + L1MA4 LINE L1 4587 5926 -374 5 1832 499 270 84 13 chr1 163538823 163538977 -33656455 + MER5A DNA MER1_type 7 171 -18 5 1832 2235 108 3 3 chr1 163538981 163539298 -33656134 - ORR1A2 LTR MaLR -8 319 3 5 1832 22 80 0 0 chr1 163539843 163539893 -33655539 + AT_rich Low_complexity Low_complexity 1 50 0 5 1832 186 368 96 48 chr1 163539893 163540207 -33655225 + L2 LINE L2 2723 3051 -368 5 1832 617 262 103 8 chr1 163540511 163540753 -33654679 - RLTR10A LTR ERVK 0 411 147 6 1832 2135 288 46 40 chr1 163540793 163543000 -33652432 - IAP-d-int LTR ERVK -204 7040 3544 6 1832 268 278 30 30 chr1 163543060 163543160 -33652272 - IAP-d-int LTR ERVK -1706 3554 3455 6 1832 1419 301 46 31 chr1 163543178 163543765 -33651667 - IAP-d-int LTR ERVK -3961 3620 2689 6 1832 323 216 139 35 chr1 163543989 163544104 -33651328 - RLTR10-int LTR ERVK -1883 929 803 6 1832 384 202 61 52 chr1 163544170 163544285 -33651147 - RLTR10-int LTR ERVK -1554 433 318 6 1832 310 240 52 0 chr1 163544301 163544397 -33651035 - RLTR10A LTR ERVK 0 411 311 6 1832 441 223 21 10 chr1 163544409 163544533 -33650899 - RLTR10A LTR ERVK -140 250 139 6 1832 425 303 24 15 chr1 163544600 163544735 -33650697 + B1F SINE Alu 15 211 -100 6 1832 184 190 34 17 chr1 163544858 163544917 -33650515 + G-rich Low_complexity Low_complexity 1 60 0 6 1832 706 82 27 0 chr1 163544967 163545077 -33650355 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 6 1832 319 359 135 0 chr1 163545676 163545868 -33649564 - L3 LINE CR1 -27 4462 4245 6 1832 294 292 78 7 chr1 163547115 163547268 -33648164 + MIRb SINE MIR 13 176 -86 6 1832 1165 82 0 20 chr1 163547459 163547595 -33647837 + B1_Mus1 SINE Alu 2 137 -11 6 1832 222 37 0 0 chr1 163547595 163547622 -33647810 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1832 1165 82 0 20 chr1 163547622 163547635 -33647797 + B1_Mus1 SINE Alu 138 148 0 6 1832 343 270 23 38 chr1 163547820 163547951 -33647481 - ID_B1 SINE B4 -1 223 95 6 1832 317 260 39 54 chr1 163548368 163548498 -33646934 + Charlie2b DNA MER1_type 1991 2118 -664 7 1832 234 245 30 20 chr1 163548579 163548679 -33646753 + Charlie2b DNA MER1_type 2352 2452 -330 7 1832 2847 182 10 134 chr1 163548709 163549054 -33646378 + RLTR17 LTR ERVK 1 329 -363 7 1832 1171 49 35 0 chr1 163549054 163549196 -33646236 + B1_Mus2 SINE Alu 1 147 0 7 1832 2847 182 10 134 chr1 163549196 163549543 -33645889 + RLTR17 LTR ERVK 330 607 -85 7 1832 333 236 110 0 chr1 163549603 163549730 -33645702 + Charlie2b DNA MER1_type 2551 2691 -91 7 1832 3728 23 0 0 chr1 163549751 163550147 -33645285 + MTA_Mm LTR MaLR 1 396 0 7 1832 337 249 141 71 chr1 163552201 163552456 -33642976 + L1MA8 LINE L1 5997 6269 -22 7 1832 438 94 0 0 chr1 163552686 163552750 -33642682 + (CTCA)n Simple_repeat Simple_repeat 1 64 0 7 1832 777 163 0 0 chr1 163552751 163552929 -33642503 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 7 1832 1085 261 88 0 chr1 163553211 163553471 -33641961 + B4A SINE B4 2 284 -8 7 1832 267 31 0 0 chr1 163554221 163554253 -33641179 + (TAA)n Simple_repeat Simple_repeat 1 32 0 7 1832 5707 121 17 20 chr1 163555042 163555846 -33639586 + Lx4A LINE L1 6249 7050 -8 7 1832 3179 79 7 22 chr1 163555846 163556259 -33639173 + MTB_Mm LTR MaLR 1 407 0 8 1832 22 0 0 0 chr1 163556275 163556297 -33639135 + AT_rich Low_complexity Low_complexity 1 22 0 8 1832 208 0 62 0 chr1 163556905 163556937 -33638495 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1832 4886 128 16 42 chr1 163557898 163558781 -33636651 + L1_Mur3 LINE L1 4823 5682 -198 8 1832 1460 189 183 15 chr1 163559378 163559706 -33635726 - ORR1B1 LTR MaLR -8 386 4 8 1832 1799 182 30 88 chr1 163560011 163560070 -33635362 + ORR1B1 LTR MaLR 1 83 -311 8 1832 734 76 160 0 chr1 163560070 163560189 -33635243 + L1Md_F2 LINE L1 6433 6570 -12 8 1832 1799 173 35 96 chr1 163560189 163560513 -33634919 + ORR1B1 LTR MaLR 84 394 0 8 1832 260 315 0 0 chr1 163560646 163560700 -33634732 + ID4 SINE ID 2 55 -28 8 1832 251 207 16 65 chr1 163560827 163560889 -33634543 + MT2B LTR ERVL 164 222 -379 8 1832 316 207 52 0 chr1 163560837 163560895 -33634537 + PB1D9 SINE Alu 11 71 -49 8 1832 1851 197 71 21 chr1 163561490 163561911 -33633521 + RMER10A LTR ERVL 1 442 0 9 1832 477 0 0 0 chr1 163561921 163561974 -33633458 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1832 441 0 0 0 chr1 163561974 163562022 -33633410 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1832 550 178 25 42 chr1 163562665 163562819 -33632613 + ORR1D2 LTR MaLR 210 370 -4 9 1832 320 272 0 0 chr1 163562825 163562906 -33632526 - MTE-int LTR MaLR -460 1120 1040 9 1832 263 422 34 43 chr1 163562932 163563167 -33632265 + RLTR21 LTR ERVK 70 302 -1270 9 1832 470 252 39 62 chr1 163563334 163563590 -33631842 + RLTR21 LTR ERVK 704 963 -441 9 1832 2094 75 77 3 chr1 163563649 163563952 -33631480 + Lx LINE L1 6300 6615 -39 9 1832 2695 57 17 0 chr1 163563952 163564302 -33631130 + L1_Mus1 LINE L1 6212 6567 0 9 1832 2094 75 77 3 chr1 163564302 163564321 -33631111 + Lx LINE L1 6616 6644 -10 9 1832 268 197 39 26 chr1 163564334 163564412 -33631020 + RLTR21 LTR ERVK 1093 1171 -233 9 1832 2032 301 93 36 chr1 163564530 163565365 -33630067 - MTE-int LTR MaLR -605 975 93 9 1832 2133 163 25 84 chr1 163565370 163565812 -33629620 + MTC LTR MaLR 1 416 -5 9 1832 377 228 28 95 chr1 163565903 163565922 -33629510 + CYRA11_Mm Unknown Y-chromosome 154 160 -457 1 1832 949 144 117 61 chr1 163565922 163566136 -33629296 - URR1A DNA MER1_type 0 226 1 1 1832 25 0 0 0 chr1 163566935 163566960 -33628472 + AT_rich Low_complexity Low_complexity 1 25 0 1 1832 1120 78 0 0 chr1 163566963 163567104 -33628328 - B1_Mus2 SINE Alu -6 141 1 1 1832 581 165 9 0 chr1 163567310 163567425 -33628007 - RMER1A Other Other -4 1026 911 1 1832 369 0 0 0 chr1 163567426 163567467 -33627965 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1832 549 0 0 0 chr1 163567467 163567527 -33627905 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1832 1341 254 19 19 chr1 163567603 163567965 -33627467 + Lx8 LINE L1 6281 6642 -831 1 1832 1113 247 47 69 chr1 163568451 163568856 -33626576 + BGLII_B LTR ERVK 10 405 -36 1 1832 3729 55 6 0 chr1 163569049 163569518 -33625914 - L1_Mus3 LINE L1 -6 6632 6161 1 1832 225 320 0 62 chr1 163569793 163569873 -33625559 - MLT1H LTR MaLR -419 130 56 1 1832 882 141 17 11 chr1 163569889 163570068 -33625364 + CT-rich Low_complexity Low_complexity 1 180 0 1 1832 593 182 141 16 chr1 163570107 163570235 -33625197 - B1_Mur2 SINE Alu -3 146 3 1 1832 712 326 53 24 chr1 163570579 163570918 -33624514 - Tigger10 DNA Tigger -1226 617 269 1 1832 2316 140 93 0 chr1 163570976 163571361 -33624071 + MTC LTR MaLR 1 421 0 1 1832 281 299 0 10 chr1 163571832 163571930 -33623502 - Lx7 LINE L1 -6 7690 7594 1 1832 379 52 17 17 chr1 163572139 163572198 -33623234 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1 1832 3262 121 48 7 chr1 163572198 163572739 -33622693 + L1_Mm LINE L1 5183 5745 -138 1 1832 1067 199 0 0 chr1 163572759 163572930 -33622502 - RMER19B LTR ERVK -676 226 56 1 1832 797 123 62 0 chr1 163572907 163573037 -33622395 - RMER19B LTR ERVK -764 138 1 1 1832 263 222 259 0 chr1 163573037 163573114 -33622318 - RCHARR1 DNA MER1_type -769 205 108 1 1832 279 258 145 0 chr1 163573951 163574075 -33621357 - LTR16A1 LTR ERVL -2 454 313 1 1832 486 0 0 0 chr1 163574643 163574697 -33620735 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1832 1256 200 4 29 chr1 163574964 163575237 -33620195 - Lx2B LINE L1 -2 6998 6733 1 1832 1989 175 5 23 chr1 163575237 163575628 -33619804 - Lx2B LINE L1 -473 6527 6144 1 1832 433 316 114 0 chr1 163575686 163575844 -33619588 + B3A SINE B2 5 180 -18 1 1832 285 241 0 92 chr1 163575876 163575995 -33619437 - Lx9 LINE L1 -5 7639 7532 1 1832 282 87 0 0 chr1 163576169 163576215 -33619217 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 1 1832 999 291 88 18 chr1 163576402 163577080 -33618352 + L1M4 LINE L1 3117 3842 -2304 1 1832 332 221 31 10 chr1 163577236 163577332 -33618100 + L1MB7 LINE L1 6078 6175 -9 1 1832 1080 75 0 58 chr1 163577520 163577675 -33617757 + B1_Mus1 SINE Alu 3 148 0 1 28 710 208 0 34 chr1 163577843 163577992 -33617440 + B1_Mus1 SINE Alu 5 148 0 1 1833 501 110 60 20 chr1 163579299 163579448 -33615984 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 1 1833 276 222 0 0 chr1 163579452 163579524 -33615908 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1833 609 317 29 38 chr1 163579594 163579833 -33615599 - B4A SINE B4 -55 237 1 1 1833 198 0 0 0 chr1 163579872 163579894 -33615538 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1833 2371 145 15 24 chr1 163580636 163581047 -33614385 - MTB_Mm LTR MaLR 0 407 1 1 1833 21 57 0 0 chr1 163581255 163581290 -33614142 + AT_rich Low_complexity Low_complexity 1 35 0 1 1833 633 27 0 0 chr1 163581766 163581841 -33613591 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 1 1833 335 293 70 21 chr1 163581860 163582003 -33613429 + L2a LINE L2 3277 3426 0 1 1833 200 302 69 11 chr1 163582284 163582371 -33613061 + MIR SINE MIR 113 204 -58 1 1833 523 312 127 12 chr1 163582482 163582919 -33612513 - Charlie4a DNA MER1_type -16 492 1 1 1833 997 271 79 47 chr1 163586095 163586718 -33608714 + L1MB1 LINE L1 5189 5828 -340 1 1833 929 209 119 0 chr1 163587122 163587323 -33608109 - URR1B DNA MER1_type 0 225 1 1 1833 3056 162 57 16 chr1 163588839 163589398 -33606034 + RMER4B LTR ERVK 1 582 -3 1 1833 460 324 97 21 chr1 163589538 163589919 -33605513 + L1MC4a LINE L1 6529 6938 -944 1 1833 343 289 56 0 chr1 163590017 163590107 -33605325 + RSINE1 SINE B4 64 158 -7 1 1833 438 36 0 0 chr1 163590130 163590186 -33605246 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1833 3001 35 79 0 chr1 163590250 163590617 -33604815 + MTA_Mm LTR MaLR 1 396 0 1 1833 248 266 0 69 chr1 163590716 163590817 -33604615 + L1MC4a LINE L1 7260 7353 -689 1 1833 1571 203 204 16 chr1 163591027 163591453 -33603979 + RMER15 LTR ERVL 34 539 -36 1 1833 231 185 22 138 chr1 163591433 163591478 -33603954 - RMER17C LTR ERVK -135 275 241 1 1833 237 65 0 0 chr1 163591478 163591509 -33603923 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1833 231 185 22 138 chr1 163591509 163591601 -33603831 - RMER17C LTR ERVK -170 240 154 1 1833 337 238 50 0 chr1 163591573 163591653 -33603779 - PB1D9 SINE Alu -32 88 5 1 1833 745 252 87 168 chr1 163591662 163591996 -33603436 + MTD LTR MaLR 113 419 0 1 1833 23 68 0 0 chr1 163592081 163592125 -33603307 + AT_rich Low_complexity Low_complexity 1 44 0 1 1833 203 186 70 0 chr1 163592184 163592227 -33603205 + L2 LINE L2 2231 2276 -1143 1 1833 230 268 45 79 chr1 163592232 163592321 -33603111 + MER112 DNA MER1_type 6 91 -170 1 1833 245 367 33 46 chr1 163592554 163592794 -33602638 + L2 LINE L2 2375 2611 -808 1 1833 2399 68 6 63 chr1 163592970 163593317 -33602115 + ORR1A2 LTR MaLR 1 327 0 1 1833 204 40 0 0 chr1 163594906 163594931 -33600501 + (CTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1833 363 335 91 30 chr1 163595117 163595314 -33600118 - B4A SINE B4 0 292 84 1 1833 219 321 0 58 chr1 163595382 163595468 -33599964 - B4A SINE B4 -211 81 1 1 1833 531 276 236 4 chr1 163595562 163595791 -33599641 + B4A SINE B4 1 282 -10 1 1833 534 171 8 16 chr1 163596084 163596209 -33599223 + CT-rich Low_complexity Low_complexity 2 125 0 1 1833 195 42 0 0 chr1 163596706 163596730 -33598702 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1833 538 181 89 15 chr1 163597062 163597197 -33598235 - Lx5 LINE L1 -3 7047 6903 1 1833 1498 148 9 63 chr1 163597224 163597542 -33597890 - Lx9 LINE L1 0 7644 7344 1 1833 378 205 0 0 chr1 163598064 163598147 -33597285 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1 1833 645 191 50 35 chr1 163598691 163598832 -33596600 + B1_Mur2 SINE Alu 5 147 -2 1 1833 299 362 132 30 chr1 163599868 163600305 -33595127 - MLT1H1 LTR MaLR -14 541 72 1 1833 533 274 55 61 chr1 163600456 163600619 -33594813 - RSINE1 SINE B4 -2 163 2 1 1833 760 128 5 43 chr1 163600774 163600961 -33594471 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1833 585 294 24 24 chr1 163601766 163601930 -33593502 - ID_B1 SINE B4 -57 167 4 1 1833 511 279 40 75 chr1 163602348 163602720 -33592712 + RLTR10D LTR ERVK 1 359 0 1 1833 394 266 192 62 chr1 163602961 163603237 -33592195 - L1MB8 LINE L1 -21 6157 5846 1 1833 600 242 87 0 chr1 163603239 163603388 -33592044 + RSINE1 SINE B4 4 165 0 1 1833 252 143 0 0 chr1 163603388 163603430 -33592002 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1833 249 314 60 34 chr1 163603469 163603560 -33591872 - L1MB8 LINE L1 -321 5857 5773 1 1833 1248 91 0 0 chr1 163603560 163603736 -33591696 + (TA)n Simple_repeat Simple_repeat 1 176 0 1 1833 249 314 60 34 chr1 163603736 163603878 -33591554 - L1MB8 LINE L1 -406 5772 5618 1 1833 283 127 32 0 chr1 163604499 163604562 -33590870 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1833 597 320 9 11 chr1 163605246 163605466 -33589966 + Lx8 LINE L1 6670 6897 -576 1 1833 1225 280 46 16 chr1 163605617 163606052 -33589380 - Lx8 LINE L1 -345 7128 6681 1 1833 257 233 67 0 chr1 163606144 163606204 -33589228 + MER74B LTR ERVL 1 64 -558 1 1833 449 339 87 48 chr1 163606256 163606601 -33588831 + MER74B LTR ERVL 159 571 -51 1 1833 772 269 85 36 chr1 163606894 163607141 -33588291 + B4 SINE B4 34 292 0 1 1833 246 314 124 0 chr1 163607281 163607386 -33588046 + Helitron3Na_Mam RC Helitron 83 200 -286 1 1833 180 247 161 23 chr1 163607580 163607667 -33587765 - MIRc SINE MIR -10 258 160 1 1833 7459 19 0 0 chr1 163608439 163609340 -33586092 + L1Md_T LINE L1 4686 5586 -297 1 1833 8500 29 0 2 chr1 163609340 163610338 -33585094 + L1Md_T LINE L1 5587 6582 0 1 1833 327 292 75 0 chr1 163610343 163610463 -33584969 - MIR SINE MIR -133 129 1 1 1833 489 17 0 0 chr1 163610515 163610573 -33584859 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1833 408 20 0 0 chr1 163610628 163610677 -33584755 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1 1833 370 198 49 14 chr1 163611828 163611912 -33583520 + B1F2 SINE Alu 1 85 -64 1 1833 2554 69 23 6 chr1 163611912 163612260 -33583172 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1833 368 227 49 106 chr1 163612260 163612298 -33583134 + PB1D10 SINE Alu 83 116 -1 1 1833 467 252 103 69 chr1 163612417 163612592 -33582840 + B3A SINE B2 2 182 -16 1 1833 324 0 0 0 chr1 163612607 163612643 -33582789 + (TTAAA)n Simple_repeat Simple_repeat 1 36 0 1 1833 207 79 25 50 chr1 163613366 163613406 -33582026 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1833 778 87 9 0 chr1 163613414 163613529 -33581903 - B1_Mus1 SINE Alu 0 148 33 1 1833 367 342 84 108 chr1 163613544 163613757 -33581675 - ID_B1 SINE B4 -13 211 4 1 1833 385 294 21 48 chr1 163614015 163614204 -33581228 - B4 SINE B4 -39 253 70 1 1833 1063 218 5 10 chr1 163614352 163614556 -33580876 - B3 SINE B2 -11 205 3 1 1833 249 118 14 42 chr1 163616177 163616248 -33579184 + A-rich Low_complexity Low_complexity 3 71 0 1 1833 555 135 1 8 chr1 163616787 163616891 -33578541 + RSINE1 SINE B4 1 98 -194 1 1833 1102 206 97 0 chr1 163616892 163617149 -33578283 + Lx9 LINE L1 7361 7642 -2 1 1833 289 246 0 0 chr1 163617156 163617213 -33578219 + RSINE1 SINE B4 91 147 -18 1 1833 1190 130 5 5 chr1 163617916 163618109 -33577323 - URR1B DNA MER1_type 0 225 33 1 1833 189 234 0 0 chr1 163619081 163619145 -33576287 + (TATG)n Simple_repeat Simple_repeat 3 66 0 1 1833 278 288 106 64 chr1 163619200 163619341 -33576091 + Lx8 LINE L1 7180 7326 -147 1 1833 248 70 0 23 chr1 163621498 163621542 -33573890 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1833 446 263 88 22 chr1 163621542 163621673 -33573759 - B1F SINE Alu -4 145 6 2 1833 306 322 113 33 chr1 163622645 163622947 -33572485 - L2a LINE L2 0 3426 3101 2 1833 183 80 0 0 chr1 163624455 163624480 -33570952 + (CGGA)n Simple_repeat Simple_repeat 4 28 0 2 1833 728 176 13 53 chr1 163625073 163625223 -33570209 + B1_Mur4 SINE Alu 6 149 -1 2 1833 743 94 0 67 chr1 163625255 163625448 -33569984 + GA-rich Low_complexity Low_complexity 1 180 0 2 1833 917 78 5 48 chr1 163625462 163625650 -33569782 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1833 269 287 45 123 chr1 163627060 163627215 -33568217 + MLT1A1 LTR MaLR 34 176 -232 2 1833 365 321 77 94 chr1 163629004 163629303 -33566129 + L1M4 LINE L1 49 342 -6200 2 1833 811 266 92 35 chr1 163629667 163629928 -33565504 + B4A SINE B4 1 276 -16 2 1833 315 127 0 0 chr1 163629935 163629998 -33565434 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 2 1833 760 287 92 80 chr1 163630207 163630657 -33564775 - L1M2 LINE L1 -508 5789 5334 2 1833 198 0 0 0 chr1 163631763 163631785 -33563647 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1833 234 91 0 0 chr1 163631979 163632012 -33563420 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 2 1833 1240 73 6 6 chr1 163632012 163632190 -33563242 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 1833 315 180 169 0 chr1 163632264 163632353 -33563079 - Lx9 LINE L1 -107 7537 7434 2 1833 616 158 541 0 chr1 163632791 163632937 -33562495 + URR1A DNA MER1_type 1 225 -1 2 1833 407 153 0 10 chr1 163633984 163634083 -33561349 + CT-rich Low_complexity Low_complexity 1 98 0 2 1833 360 0 0 0 chr1 163634090 163634130 -33561302 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1833 182 62 0 30 chr1 163635767 163635800 -33559632 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1833 384 253 66 0 chr1 163636784 163636875 -33558557 + B1F2 SINE Alu 46 142 -7 2 1833 297 0 0 0 chr1 163636876 163636909 -33558523 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1833 414 0 0 0 chr1 163636909 163636954 -33558478 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1833 186 43 0 0 chr1 163637279 163637302 -33558130 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1833 283 229 24 63 chr1 163637484 163637610 -33557822 + LTR73 LTR ERV1 432 552 -20 2 1833 288 309 32 0 chr1 163637721 163637815 -33557617 - L2a LINE L2 -35 3391 3295 2 1833 1195 240 92 9 chr1 163637824 163638173 -33557259 + MLT1B LTR MaLR 9 386 -4 2 1833 268 357 29 0 chr1 163638979 163639119 -33556313 - L2a LINE L2 -996 2423 2280 2 1833 232 329 0 0 chr1 163639766 163639842 -33555590 - ID4 SINE ID -1 82 7 2 1833 5508 51 3 3 chr1 163640451 163641119 -33554313 + L1Md_F2 LINE L1 5903 6570 -12 2 1833 629 320 102 28 chr1 163641252 163641535 -33553897 + MLT1I LTR MaLR 91 394 -17 2 1833 225 83 0 0 chr1 163641978 163642014 -33553418 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1833 573 55 0 0 chr1 163642017 163642090 -33553342 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1833 903 51 0 0 chr1 163642384 163642501 -33552931 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 2 1833 468 0 0 0 chr1 163642828 163642880 -33552552 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1833 28 29 0 0 chr1 163643538 163643573 -33551859 + AT_rich Low_complexity Low_complexity 1 35 0 2 1833 1550 6 6 0 chr1 163645667 163645846 -33549586 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1833 226 24 0 89 chr1 163646175 163646220 -33549212 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1833 261 0 0 0 chr1 163646505 163646534 -33548898 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1833 342 0 0 0 chr1 163646534 163646571 -33548861 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1833 641 281 6 17 chr1 163646877 163647051 -33548381 + B3A SINE B2 27 198 0 2 1833 193 286 0 21 chr1 163647672 163647765 -33547667 + (TCTCTG)n Simple_repeat Simple_repeat 1 91 0 2 1833 198 0 0 0 chr1 163647846 163647868 -33547564 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2 1833 415 293 98 0 chr1 163649587 163649720 -33545712 - B1_Mur1 SINE Alu 0 149 4 2 1833 1259 261 106 39 chr1 163649830 163650316 -33545116 + L1MC2 LINE L1 5187 5736 -608 2 1833 221 0 0 33 chr1 163650316 163650346 -33545086 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1833 1259 285 143 25 chr1 163650346 163650877 -33544555 + L1MC2 LINE L1 5737 6321 -12 2 1833 201 121 0 0 chr1 163651016 163651049 -33544383 + (TCC)n Simple_repeat Simple_repeat 1 33 0 2 1833 376 79 0 0 chr1 163651392 163651455 -33543977 - MusHAL1 LINE L1 0 3353 3291 2 1833 1820 111 7 4 chr1 163651460 163651731 -33543701 - ORR1A2 LTR MaLR -55 272 1 2 1833 7092 109 17 8 chr1 163651731 163652839 -33542593 - ORR1A2-int LTR MaLR 0 1963 846 2 1833 19374 68 13 23 chr1 163652839 163653215 -33542217 - MusHAL1 LINE L1 -46 3307 2930 2 1833 243 0 0 0 chr1 163653215 163653242 -33542190 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1833 19374 68 15 21 chr1 163653242 163655680 -33539752 - MusHAL1 LINE L1 -424 2929 514 2 1833 4483 73 4 0 chr1 163657821 163658382 -33537050 - L1VL4 LINE L1 -5532 770 208 2 1833 306 0 0 0 chr1 163658664 163658698 -33536734 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2 1833 380 246 122 8 chr1 163659286 163659417 -33536015 + B1_Mur1 SINE Alu 1 146 -3 2 1833 284 206 40 14 chr1 163659417 163659491 -33535941 + GA-rich Low_complexity Low_complexity 1 76 0 2 1833 515 146 21 0 chr1 163659491 163659587 -33535845 + G-rich Low_complexity Low_complexity 4 101 0 2 1833 285 213 0 32 chr1 163659599 163659662 -33535770 + GA-rich Low_complexity Low_complexity 1 61 0 2 1833 854 19 0 9 chr1 163659662 163659767 -33535665 + (GAGAA)n Simple_repeat Simple_repeat 5 108 0 2 1833 390 252 0 0 chr1 163660094 163660209 -33535223 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1833 601 263 44 19 chr1 163660344 163660503 -33534929 + RSINE1 SINE B4 3 165 0 2 1833 282 258 0 0 chr1 163660503 163660592 -33534840 + (CATA)n Simple_repeat Simple_repeat 3 91 0 2 1833 279 0 0 0 chr1 163662226 163662257 -33533175 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1833 180 77 0 0 chr1 163662257 163662282 -33533150 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1833 333 0 0 0 chr1 163662399 163662436 -33532996 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1833 754 233 162 33 chr1 163663272 163663512 -33531920 - B4 SINE B4 -20 272 2 2 1833 216 0 0 0 chr1 163663630 163663654 -33531778 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1833 360 279 72 0 chr1 163663661 163663772 -33531660 + Charlie4a DNA MER1_type 354 472 -36 2 1833 21 0 0 0 chr1 163664988 163665009 -33530423 + AT_rich Low_complexity Low_complexity 1 21 0 2 1833 320 280 117 18 chr1 163665521 163665692 -33529740 - MER90a LTR ERV1 -154 460 273 2 1833 1026 133 125 20 chr1 163665822 163666022 -33529410 - URR1A DNA MER1_type 0 226 6 2 1833 334 281 73 0 chr1 163666403 163666499 -33528933 + PB1D10 SINE Alu 10 112 -5 2 1833 483 248 125 46 chr1 163666530 163666682 -33528750 + RSINE1 SINE B4 2 165 0 2 1833 26 0 0 0 chr1 163666697 163666723 -33528709 + AT_rich Low_complexity Low_complexity 1 26 0 2 1833 26 30 0 0 chr1 163667263 163667296 -33528136 + AT_rich Low_complexity Low_complexity 1 33 0 2 1833 264 276 103 70 chr1 163667375 163667531 -33527901 + L1ME1 LINE L1 5989 6149 -30 2 1833 529 340 48 30 chr1 163668185 163668455 -33526977 + B4A SINE B4 17 291 -1 2 1833 2389 104 6 0 chr1 163668459 163668786 -33526646 - ORR1A4 LTR MaLR 0 329 1 2 1833 714 92 0 16 chr1 163669400 163669521 -33525911 - ORR1B1 LTR MaLR -235 159 41 2 1833 247 206 0 36 chr1 163669771 163669882 -33525550 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 2 1833 2101 172 63 7 chr1 163671235 163671663 -33523769 + RLTR20B1 LTR ERVK 1 452 -111 2 1833 1229 87 0 0 chr1 163671670 163671843 -33523589 - MT2C_Mm LTR ERVL -302 173 1 2 1833 247 216 27 13 chr1 163671968 163672043 -33523389 - RSINE1 SINE B4 -4 161 86 2 1833 329 203 0 0 chr1 163672103 163672167 -33523265 - ID_B1 SINE B4 -1 223 160 2 1833 335 69 153 0 chr1 163672190 163672262 -33523170 + RLTR47_MM LTR ERV1 1 83 -449 2 1833 440 273 25 0 chr1 163672266 163672387 -33523045 - B1_Mur3 SINE Alu -20 129 6 2 1833 281 224 10 115 chr1 163672308 163672404 -33523028 - MT2B LTR ERVL -361 240 155 2 1833 495 69 0 0 chr1 163673490 163673562 -33521870 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 2 1833 216 0 0 0 chr1 163673612 163673636 -33521796 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1833 1882 111 97 3 chr1 163673769 163674068 -33521364 - ORR1A2 LTR MaLR 0 327 1 2 1833 1009 249 14 0 chr1 163674316 163674529 -33520903 + B3 SINE B2 1 216 0 2 1833 1140 91 0 0 chr1 163674608 163674751 -33520681 - B1_Mus1 SINE Alu -5 143 1 2 1833 183 286 46 31 chr1 163675098 163675163 -33520269 - MIRb SINE MIR -101 167 102 2 1833 1244 92 37 21 chr1 163675535 163675562 -33519870 - B2_Mm2 SINE B2 0 195 172 2 1833 302 0 26 0 chr1 163675562 163675600 -33519832 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1833 1244 92 37 21 chr1 163675600 163675761 -33519671 - B2_Mm2 SINE B2 -24 171 4 2 1833 2213 83 102 6 chr1 163675814 163676177 -33519255 + MT2C_Mm LTR ERVL 1 398 -77 2 1833 306 0 0 0 chr1 163676433 163676467 -33518965 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1833 28 0 0 0 chr1 163677920 163677948 -33517484 + AT_rich Low_complexity Low_complexity 1 28 0 2 1833 531 98 0 0 chr1 163677949 163678041 -33517391 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1833 482 194 11 21 chr1 163678041 163678136 -33517296 + RLTR20B1 LTR ERVK 470 563 0 2 1833 229 333 10 10 chr1 163678534 163678597 -33516835 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2 1833 661 53 11 11 chr1 163678597 163678692 -33516740 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 2 1833 229 333 10 10 chr1 163678692 163678731 -33516701 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 2 1833 987 303 51 32 chr1 163679636 163680008 -33515424 - MTEa LTR MaLR 0 379 1 3 1833 243 0 0 0 chr1 163680296 163680323 -33515109 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1833 244 188 0 45 chr1 163680463 163680530 -33514902 - ID_B1 SINE B4 -79 145 82 3 1833 845 237 67 0 chr1 163682565 163682759 -33512673 + B3 SINE B2 3 209 -7 3 1833 1426 238 90 8 chr1 163683397 163683765 -33511667 - MTD LTR MaLR -3 416 19 3 1833 503 256 32 0 chr1 163684213 163684338 -33511094 - B1F1 SINE Alu -15 134 6 3 1833 188 86 0 28 chr1 163686057 163686093 -33509339 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 3 1833 198 0 0 0 chr1 163686106 163686128 -33509304 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1833 4391 231 46 31 chr1 163686292 163687317 -33508115 - Lx6 LINE L1 0 7460 6421 3 1833 292 74 36 36 chr1 163687450 163687506 -33507926 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 3 1833 270 0 0 0 chr1 163687590 163687620 -33507812 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 3 1833 222 209 0 23 chr1 163687900 163687944 -33507488 + C-rich Low_complexity Low_complexity 4 46 0 3 1833 844 198 123 0 chr1 163688692 163688854 -33506578 + B3A SINE B2 1 182 -16 3 1833 1010 263 35 25 chr1 163688887 163689172 -33506260 + B4 SINE B4 1 288 -4 3 1833 195 229 0 0 chr1 163689177 163689238 -33506194 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1833 519 233 0 0 chr1 163689254 163689430 -33506002 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1833 476 332 76 16 chr1 163689750 163690013 -33505419 + L1ME2z LINE L1 5579 5854 -590 3 1833 187 293 27 0 chr1 163691020 163691095 -33504337 - L2 LINE L2 -586 2833 2757 3 1833 307 322 9 9 chr1 163692834 163692950 -33502482 + PB1D10 SINE Alu 1 116 -1 3 1833 776 342 79 17 chr1 163693406 163693813 -33501619 + Lx8 LINE L1 7036 7467 -6 3 1833 273 57 0 0 chr1 163694487 163694522 -33500910 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3 1833 360 305 15 8 chr1 163695558 163695690 -33499742 + MER5A1 DNA MER1_type 2 134 -32 3 1833 398 114 14 0 chr1 163696600 163696670 -33498762 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1833 387 0 0 0 chr1 163696670 163696713 -33498719 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 3 1833 234 0 0 0 chr1 163697045 163697071 -33498361 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1833 5129 141 35 19 chr1 163697821 163698675 -33496757 - Lx2B LINE L1 -4 6996 6129 3 1833 246 203 47 0 chr1 163698714 163698778 -33496654 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 3 1833 4677 99 21 0 chr1 163700081 163700749 -33494683 + Lx2 LINE L1 6310 6991 -6 3 1833 243 0 0 0 chr1 163700749 163700776 -33494656 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1833 468 243 22 14 chr1 163701334 163701472 -33493960 + Lx6 LINE L1 7145 7283 -177 3 1833 289 93 0 36 chr1 163701477 163701533 -33493899 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 3 1833 234 350 20 0 chr1 163701585 163701685 -33493747 + Lx7 LINE L1 7208 7309 -387 3 1833 1698 84 8 0 chr1 163702215 163702453 -33492979 + Lx3_Mus LINE L1 6770 7009 0 3 1833 232 314 80 61 chr1 163703548 163703711 -33491721 + MER20 DNA MER1_type 30 195 -24 3 1833 246 250 14 14 chr1 163704195 163704264 -33491168 + ID2 SINE ID 6 74 -9 3 1833 180 314 0 0 chr1 163704321 163704372 -33491060 + MIRm SINE MIR 226 276 0 3 1833 257 269 39 0 chr1 163705758 163705836 -33489596 + L1M1 LINE L1 5826 5906 -397 3 1833 608 293 26 26 chr1 163706406 163706560 -33488872 - RSINE1 SINE B4 -4 161 8 3 1833 234 268 47 35 chr1 163706726 163706811 -33488621 - MIRc SINE MIR -163 105 20 3 1833 412 222 45 18 chr1 163707222 163707332 -33488100 - MLT1A0 LTR MaLR -222 143 31 3 1833 227 245 0 19 chr1 163707525 163707579 -33487853 - ID_B1 SINE B4 -3 221 169 3 1833 254 253 69 46 chr1 163707541 163707628 -33487804 - B1F SINE Alu -47 102 14 3 1833 25 0 0 0 chr1 163707628 163707653 -33487779 + AT_rich Low_complexity Low_complexity 1 25 0 3 1833 1651 285 54 36 chr1 163707767 163708320 -33487112 + Lx8 LINE L1 6575 7137 -336 3 1833 1132 80 0 0 chr1 163708337 163708475 -33486957 + B1_Mus2 SINE Alu 2 139 -8 3 1833 450 0 0 0 chr1 163708503 163708553 -33486879 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1833 315 0 0 0 chr1 163708553 163708587 -33486845 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1834 459 0 0 0 chr1 163709201 163709252 -33486180 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1834 197 165 5 0 chr1 163712551 163712590 -33482842 + L2b LINE L2 3334 3377 -10 3 1834 435 287 0 0 chr1 163713992 163714142 -33481290 + (TA)n Simple_repeat Simple_repeat 2 151 0 3 1834 739 210 6 47 chr1 163715192 163715362 -33480070 + RSINE1 SINE B4 3 165 0 3 1834 366 23 0 0 chr1 163716274 163716317 -33479115 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 3 1834 1399 144 108 29 chr1 163716321 163716600 -33478832 - Lx5 LINE L1 0 7050 6750 3 1834 978 197 55 27 chr1 163717617 163717836 -33477596 - URR1A DNA MER1_type 0 226 2 3 1834 189 0 0 0 chr1 163717933 163717954 -33477478 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 1834 216 235 0 0 chr1 163718217 163718285 -33477147 + (TGG)n Simple_repeat Simple_repeat 3 70 0 3 1834 313 0 0 222 chr1 163719279 163719378 -33476054 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1834 599 266 43 41 chr1 163720850 163721069 -33474363 + B3A SINE B2 1 216 0 3 1834 408 319 7 7 chr1 163721288 163721424 -33474008 - B1F SINE Alu -12 137 2 3 1834 942 53 0 70 chr1 163721661 163721785 -33473647 + B1_Mus1 SINE Alu 16 139 -9 3 1834 243 0 0 0 chr1 163721785 163721812 -33473620 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1834 942 53 0 70 chr1 163721812 163721830 -33473602 + B1_Mus1 SINE Alu 140 148 0 3 1834 201 94 0 0 chr1 163722368 163722400 -33473032 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1834 272 377 107 43 chr1 163722467 163722747 -33472685 - LTR33B LTR ERVL -193 310 13 3 1834 32 26 0 0 chr1 163722996 163723035 -33472397 + AT_rich Low_complexity Low_complexity 1 39 0 3 1834 579 271 0 29 chr1 163723382 163723519 -33471913 - ID_B1 SINE B4 -7 217 85 3 1834 384 265 27 68 chr1 163723911 163724057 -33471375 - MLT1B LTR MaLR -12 378 239 3 1834 503 217 154 83 chr1 163724743 163724899 -33470533 - MTEa LTR MaLR -8 371 205 3 1834 186 43 0 0 chr1 163725678 163725701 -33469731 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1834 3453 106 27 17 chr1 163727411 163727937 -33467495 + Lx3B LINE L1 6440 6970 -3 3 1834 491 144 154 0 chr1 163727972 163728076 -33467356 - MTEa LTR MaLR -299 120 1 3 1834 514 201 10 66 chr1 163728624 163728821 -33466611 + RMER17C LTR ERVK 90 275 -135 3 1834 233 308 0 15 chr1 163728974 163729040 -33466392 + C-rich Low_complexity Low_complexity 1 65 0 3 1834 1265 215 11 164 chr1 163729717 163730150 -33465282 - ORR1D1 LTR MaLR -7 367 1 3 1834 195 294 61 52 chr1 163730499 163730614 -33464818 - MIRb SINE MIR -124 144 29 3 1834 657 114 0 0 chr1 163731467 163731572 -33463860 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1834 256 60 0 57 chr1 163731796 163731849 -33463583 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 3 1834 1107 83 14 0 chr1 163731849 163731994 -33463438 - B1_Mus1 SINE Alu 0 148 2 3 1834 5224 28 2 1 chr1 163733030 163733822 -33461610 - L1Md_F2 LINE L1 -383 6199 5408 3 1834 2854 38 0 3 chr1 163733822 163734170 -33461262 + L1Md_F2 LINE L1 6224 6570 -12 3 1834 635 191 122 0 chr1 163734183 163734314 -33461118 + B1_Mur2 SINE Alu 3 149 0 3 1834 446 254 183 0 chr1 163735731 163735900 -33459532 + L2a LINE L2 3226 3425 -1 3 1834 345 384 47 30 chr1 163736005 163736277 -33459155 + MER102c DNA MER1_type 36 312 -19 3 1834 1193 62 0 0 chr1 163736685 163736831 -33458601 - B1_Mm SINE Alu -1 146 1 3 1834 313 329 90 27 chr1 163737390 163737612 -33457820 - L2a LINE L2 -43 3383 3148 3 1834 420 240 97 24 chr1 163737785 163737909 -33457523 - B1F2 SINE Alu -2 147 15 3 1834 265 284 61 52 chr1 163737992 163738107 -33457325 - MLT1J2 LTR MaLR 0 448 333 3 1834 287 212 12 0 chr1 163738373 163738453 -33456979 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 3 1834 489 257 145 57 chr1 163738488 163738715 -33456717 + MER2 DNA MER2_type 41 287 -58 3 1834 1217 272 188 29 chr1 163739515 163740180 -33455252 + Lx9 LINE L1 6874 7644 0 3 1834 798 274 175 23 chr1 163740369 163740809 -33454623 + MT2A LTR ERVL 27 533 0 3 1834 585 64 0 0 chr1 163741576 163741654 -33453778 + (TATG)n Simple_repeat Simple_repeat 3 80 0 3 1834 252 143 0 0 chr1 163741693 163741735 -33453697 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1834 210 256 39 0 chr1 163741798 163741876 -33453556 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3 1834 386 233 0 67 chr1 163741838 163742031 -33453401 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1834 813 304 124 9 chr1 163742198 163742513 -33452919 + ORR1E LTR MaLR 4 354 -5 3 1834 588 288 60 50 chr1 163742502 163742703 -33452729 - MTE2a LTR MaLR -41 338 136 3 1834 303 278 111 0 chr1 163743298 163743406 -33452026 - PB1D9 SINE Alu 0 120 1 3 1834 314 65 0 0 chr1 163743800 163743846 -33451586 - 4.5SRNA scRNA scRNA -36 58 13 3 1834 1738 32 0 22 chr1 163743847 163744073 -33451359 + L1Md_F3 LINE L1 6349 6569 -15 3 1834 333 90 14 29 chr1 163744184 163744253 -33451179 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1834 641 236 21 0 chr1 163744359 163744499 -33450933 + B3A SINE B2 2 144 -54 3 1834 387 0 0 0 chr1 163744499 163744542 -33450890 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1834 180 0 0 0 chr1 163744542 163744561 -33450871 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1834 1770 115 42 3 chr1 163744720 163745026 -33450406 + MERVL_2A-int LTR ERVL 5373 5690 -71 4 1834 409 206 9 45 chr1 163745024 163745136 -33450296 + MERVL_2A-int LTR ERVL 5619 5726 -35 4 1834 1062 281 54 77 chr1 163745154 163745660 -33449772 + MT2B LTR ERVL 3 593 -8 4 1834 216 200 0 0 chr1 163745821 163745876 -33449556 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1834 210 143 0 0 chr1 163746839 163746888 -33448544 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1834 420 55 0 0 chr1 163749035 163749090 -33446342 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1834 180 0 0 0 chr1 163749090 163749110 -33446322 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1834 249 225 215 9 chr1 163749530 163749686 -33445746 + MIR SINE MIR 80 261 -1 4 1834 407 282 142 44 chr1 163749883 163750087 -33445345 + ID_B1 SINE B4 1 224 0 4 1834 332 279 8 90 chr1 163750117 163750232 -33445200 + PB1D7 SINE Alu 2 107 -13 4 1834 396 59 0 0 chr1 163750232 163750283 -33445149 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 4 1834 368 36 54 0 chr1 163750405 163750461 -33444971 + (TAAAA)n Simple_repeat Simple_repeat 3 61 0 4 1834 372 345 67 42 chr1 163751391 163751630 -33443802 + L1MCa LINE L1 1024 1268 -5149 4 1834 224 258 113 0 chr1 163751638 163751700 -33443732 + B3A SINE B2 23 91 -107 4 1834 1334 87 33 22 chr1 163752535 163752761 -33442671 - MTB LTR MaLR 0 400 142 4 1834 23 33 0 0 chr1 163753337 163753367 -33442065 + AT_rich Low_complexity Low_complexity 1 30 0 4 1834 672 145 92 78 chr1 163753449 163753591 -33441841 + B1_Mur3 SINE Alu 6 149 0 4 1834 254 69 33 33 chr1 163753591 163753651 -33441781 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 4 1834 611 237 399 13 chr1 163754429 163755186 -33440246 + L1MCa LINE L1 1568 2617 -3704 4 1834 298 279 229 46 chr1 163755241 163755481 -33439951 + L1M4 LINE L1 4843 5126 -1020 4 1834 293 339 39 47 chr1 163755502 163755629 -33439803 + RMER12 LTR ERVK 726 851 -471 4 1834 397 270 134 28 chr1 163755648 163755865 -33439567 + L1M2 LINE L1 5410 5649 -642 4 1834 1154 75 0 0 chr1 163755880 163756026 -33439406 + B1_Mus2 SINE Alu 1 146 -1 4 1834 607 192 7 14 chr1 163756260 163756408 -33439024 + GA-rich Low_complexity Low_complexity 2 148 0 4 1834 340 283 9 54 chr1 163757024 163757136 -33438296 + L1ME3A LINE L1 6002 6108 -65 4 1834 322 378 78 67 chr1 163758755 163759101 -33436331 + L2 LINE L2 2536 2885 -534 4 1834 21 0 0 0 chr1 163759508 163759529 -33435903 + AT_rich Low_complexity Low_complexity 1 21 0 4 1834 25 0 0 0 chr1 163759872 163759897 -33435535 + AT_rich Low_complexity Low_complexity 1 25 0 4 1834 884 272 70 30 chr1 163760926 163761297 -33434135 + L1MA6 LINE L1 5547 5932 -368 4 1834 4426 186 160 10 chr1 163761412 163762688 -33432744 + Lx2B LINE L1 5497 6954 -46 4 1834 276 195 59 42 chr1 163762691 163762809 -33432623 + Lx4B LINE L1 6877 7050 -8 4 1834 256 356 59 10 chr1 163763820 163763922 -33431510 + PB1 SINE Alu 1 107 -20 4 1834 186 143 0 0 chr1 163765690 163765718 -33429714 - MIR SINE MIR -139 69 42 4 1834 198 0 0 0 chr1 163766217 163766239 -33429193 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4 1834 480 273 0 0 chr1 163766625 163766724 -33428708 + PB1D10 SINE Alu 9 107 -10 4 1834 306 295 89 8 chr1 163766724 163766742 -33428690 + B4A SINE B4 114 219 -73 4 1834 243 61 0 0 chr1 163767334 163767367 -33428065 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1834 226 330 34 51 chr1 163768473 163768591 -33426841 + PB1D10 SINE Alu 1 116 -1 4 1834 25 0 0 0 chr1 163769169 163769194 -33426238 + AT_rich Low_complexity Low_complexity 1 25 0 4 1834 23 0 0 0 chr1 163771810 163771833 -33423599 + AT_rich Low_complexity Low_complexity 1 23 0 4 1834 323 267 67 0 chr1 163772099 163772174 -33423258 + B1_Mus1 SINE Alu 14 93 -55 4 1834 278 305 0 0 chr1 163772207 163772266 -33423166 + ID4 SINE ID 15 73 -10 4 1834 264 261 70 28 chr1 163772266 163772278 -33423154 + ID SINE ID 15 88 -136 4 1834 186 43 0 0 chr1 163772544 163772567 -33422865 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1834 22 0 0 0 chr1 163772787 163772809 -33422623 + AT_rich Low_complexity Low_complexity 1 22 0 4 1834 324 0 0 0 chr1 163774459 163774495 -33420937 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1834 26 0 0 0 chr1 163776878 163776904 -33418528 + AT_rich Low_complexity Low_complexity 1 26 0 4 1834 284 240 157 20 chr1 163776998 163777040 -33418392 + PB1D10 SINE Alu 2 117 0 4 1834 303 150 50 0 chr1 163777040 163777100 -33418332 + ID_B1 SINE B4 162 224 0 4 1834 23 0 0 0 chr1 163778123 163778146 -33417286 + AT_rich Low_complexity Low_complexity 1 23 0 4 1834 262 309 80 18 chr1 163778462 163778574 -33416858 + MIR SINE MIR 8 126 -136 4 1834 791 21 0 10 chr1 163779361 163779459 -33415973 + (GAAA)n Simple_repeat Simple_repeat 2 98 0 4 1834 597 120 0 0 chr1 163779476 163779568 -33415864 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 4 1834 290 305 28 99 chr1 163779783 163779925 -33415507 - RSINE1 SINE B4 -33 132 1 4 1834 198 0 0 0 chr1 163779996 163780018 -33415414 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1834 499 211 19 112 chr1 163780264 163780424 -33415008 + B3 SINE B2 71 215 -1 4 1834 566 301 108 35 chr1 163781545 163781813 -33413619 + B4A SINE B4 9 292 0 4 1834 408 20 0 0 chr1 163781828 163781877 -33413555 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1834 333 140 0 0 chr1 163781877 163781934 -33413498 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1834 22 35 0 0 chr1 163782818 163782847 -33412585 + AT_rich Low_complexity Low_complexity 1 29 0 4 1834 189 0 0 0 chr1 163782916 163782937 -33412495 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1834 508 281 13 20 chr1 163783222 163783371 -33412061 + B1F1 SINE Alu 1 148 -1 4 1834 23 0 0 0 chr1 163783802 163783825 -33411607 + AT_rich Low_complexity Low_complexity 1 23 0 4 1834 28 79 0 0 chr1 163784037 163784100 -33411332 + AT_rich Low_complexity Low_complexity 1 63 0 4 1834 1214 94 0 0 chr1 163784802 163784972 -33410460 + B2_Mm2 SINE B2 1 170 -25 4 1834 1048 69 20 14 chr1 163784975 163785122 -33410310 + B1_Mus1 SINE Alu 1 148 0 4 1834 1803 88 21 25 chr1 163785301 163785582 -33409850 + L1_Mus3 LINE L1 6358 6637 -1 4 1834 467 246 76 48 chr1 163787296 163787441 -33407991 + B1F SINE Alu 1 149 0 4 1834 261 0 0 0 chr1 163787749 163787778 -33407654 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1834 1149 48 14 0 chr1 163787778 163787924 -33407508 - B1_Mus1 SINE Alu 0 148 1 4 1834 371 306 12 0 chr1 163787939 163788024 -33407408 + PB1D10 SINE Alu 1 86 -31 4 1834 25 63 0 16 chr1 163788335 163788346 -33407086 + AT_rich Low_complexity Low_complexity 1 11 0 4 1834 1347 174 0 41 chr1 163788346 163788616 -33406816 - Lx4A LINE L1 -3 7055 6797 4 1834 25 63 0 16 chr1 163788616 163788668 -33406764 + AT_rich Low_complexity Low_complexity 1 52 0 4 1834 1178 61 0 0 chr1 163790690 163790838 -33404594 - B1_Mus1 SINE Alu 0 148 1 4 1834 467 302 34 7 chr1 163790952 163791106 -33404326 - MER33 DNA MER1_type -180 144 1 4 1834 843 91 20 34 chr1 163791144 163791292 -33404140 - URR1A DNA MER1_type 0 226 81 4 1834 1315 94 39 0 chr1 163791477 163791657 -33403775 - B2_Mm2 SINE B2 -8 187 1 4 1834 206 315 55 22 chr1 163791688 163791779 -33403653 - L3 LINE CR1 -338 4151 4058 4 1834 228 67 0 0 chr1 163792473 163792503 -33402929 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1834 181 0 69 0 chr1 163793390 163793419 -33402013 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 1834 1162 62 7 0 chr1 163793419 163793565 -33401867 - B1_Mus2 SINE Alu 0 147 1 4 1834 3072 52 5 0 chr1 163794860 163795241 -33400191 + L1_Mus1 LINE L1 6185 6567 0 4 1834 402 21 0 0 chr1 163795351 163795398 -33400034 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1834 210 37 0 0 chr1 163795433 163795460 -33399972 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1834 745 156 40 16 chr1 163795461 163795585 -33399847 - B1_Mur4 SINE Alu -11 139 13 4 1834 863 88 0 21 chr1 163795628 163795768 -33399664 + L1Md_F2 LINE L1 6439 6575 -7 4 1834 3463 205 45 52 chr1 163795835 163796665 -33398767 + Lx7 LINE L1 6873 7696 0 4 1834 773 142 54 47 chr1 163796800 163796948 -33398484 + B1_Mur3 SINE Alu 1 149 0 4 1834 803 154 66 0 chr1 163797176 163797312 -33398120 + B1_Mur4 SINE Alu 1 145 -5 4 1834 195 42 0 0 chr1 163797315 163797339 -33398093 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1834 258 180 0 0 chr1 163797341 163797402 -33398030 + GA-rich Low_complexity Low_complexity 4 64 0 4 1834 702 299 17 6 chr1 163798196 163798371 -33397061 + B3A SINE B2 2 178 -20 4 1834 428 246 102 0 chr1 163798682 163798800 -33396632 - ID_B1 SINE B4 -15 209 80 4 1834 36 40 0 0 chr1 163800493 163800543 -33394889 + AT_rich Low_complexity Low_complexity 1 50 0 4 1834 21 57 0 0 chr1 163800681 163800716 -33394716 + AT_rich Low_complexity Low_complexity 1 35 0 4 1834 898 138 28 0 chr1 163800764 163800909 -33394523 + B1_Mur4 SINE Alu 1 149 -1 4 1834 335 292 36 20 chr1 163800915 163801039 -33394393 + ID4 SINE ID 2 125 -27 4 1834 216 0 0 0 chr1 163801269 163801293 -33394139 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1834 1161 56 0 0 chr1 163801293 163801431 -33394001 - B1_Mus2 SINE Alu -8 139 2 4 1834 504 146 0 0 chr1 163801496 163801585 -33393847 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1834 1087 115 0 13 chr1 163802406 163802565 -33392867 + B2_Mm2 SINE B2 1 157 -38 4 1834 426 121 0 0 chr1 163802565 163802631 -33392801 + (TAGG)n Simple_repeat Simple_repeat 1 66 0 5 1834 242 283 92 30 chr1 163803736 163803867 -33391565 + Charlie7 DNA MER1_type 2444 2582 -30 5 1834 727 262 80 33 chr1 163804072 163804348 -33391084 + MLT1D LTR MaLR 207 495 -10 5 1834 301 324 109 24 chr1 163804458 163804651 -33390781 - MIRc SINE MIR -10 252 62 5 1834 307 281 126 88 chr1 163804725 163804940 -33390492 + MIR SINE MIR 40 262 0 5 1834 241 252 57 28 chr1 163806728 163806834 -33388598 + C-rich Low_complexity Low_complexity 3 111 0 5 1834 1516 158 69 45 chr1 163807892 163808271 -33387161 + RMER10A LTR ERVL 34 421 -21 5 1834 189 0 0 0 chr1 163808271 163808292 -33387140 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5 1834 683 262 149 0 chr1 163808295 163808596 -33386836 - L1MA6 LINE L1 -240 6060 5715 5 1834 1495 145 93 58 chr1 163808622 163809018 -33386414 - RMER17C LTR ERVK 0 410 1 5 1834 2158 199 45 32 chr1 163809062 163809534 -33385898 - RMER20A LTR ERVK -38 478 1 5 1834 207 0 0 0 chr1 163809536 163809559 -33385873 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1834 645 257 161 10 chr1 163809589 163809782 -33385650 - MTC LTR MaLR -3 418 197 5 1834 456 201 271 31 chr1 163809796 163809958 -33385474 - B3A SINE B2 -2 214 14 5 1834 813 248 40 0 chr1 163809974 163810176 -33385256 - MTC LTR MaLR -211 210 1 5 1834 520 250 46 26 chr1 163810176 163810328 -33385104 - MTC-int LTR MaLR 0 1258 1104 5 1834 308 311 8 32 chr1 163810331 163810454 -33384978 - L1MA6 LINE L1 -731 5566 5447 5 1834 1143 75 0 0 chr1 163810520 163810666 -33384766 - B1_Mus2 SINE Alu 0 147 2 5 1834 308 243 111 1 chr1 163810671 163810818 -33384614 - L1MA6 LINE L1 -2558 5437 5278 5 1834 733 192 11 11 chr1 163811352 163811526 -33383906 + GA-rich Low_complexity Low_complexity 3 176 0 5 1834 251 360 0 26 chr1 163811736 163811813 -33383619 + PB1D10 SINE Alu 12 86 -31 5 1834 572 276 70 100 chr1 163811887 163812435 -33382997 + RLTR12B LTR ERVK 1 544 -24 5 1834 978 43 21 0 chr1 163813173 163813313 -33382119 + (GA)n Simple_repeat Simple_repeat 2 144 0 5 1834 297 0 0 0 chr1 163813394 163813427 -33382005 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1834 237 244 0 89 chr1 163814357 163814447 -33380985 - Charlie4a DNA MER1_type -370 138 57 5 1834 407 274 36 87 chr1 163814514 163814588 -33380844 + MER112 DNA MER1_type 18 87 -174 5 1834 345 263 78 28 chr1 163814588 163814729 -33380703 + B1F SINE Alu 2 149 0 5 1834 407 274 36 87 chr1 163814729 163814838 -33380594 + MER112 DNA MER1_type 88 186 -75 5 1834 270 95 0 0 chr1 163814838 163814880 -33380552 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1834 407 274 36 87 chr1 163814880 163814947 -33380485 + MER112 DNA MER1_type 187 255 -6 5 1834 557 299 68 71 chr1 163815122 163815374 -33380058 + B4 SINE B4 20 270 -22 5 1834 414 0 0 0 chr1 163815377 163815423 -33380009 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1834 22 0 0 0 chr1 163815692 163815714 -33379718 + AT_rich Low_complexity Low_complexity 1 22 0 5 1834 450 0 0 0 chr1 163816201 163816251 -33379181 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1834 372 263 180 33 chr1 163816284 163816406 -33379026 + RSINE1 SINE B4 1 140 -25 5 1834 855 281 111 16 chr1 163816654 163817023 -33378409 + RMER15 LTR ERVL 172 575 0 5 1834 267 313 10 29 chr1 163817063 163817165 -33378267 - MLT1A LTR MaLR -272 102 3 5 1834 415 0 18 18 chr1 163817744 163817800 -33377632 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1834 479 274 0 33 chr1 163818807 163818942 -33376490 + B1F SINE Alu 21 149 0 5 1834 538 243 49 65 chr1 163819246 163819431 -33376001 - B3A SINE B2 -16 182 1 5 1834 198 0 0 0 chr1 163819597 163819619 -33375813 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1834 1413 78 11 0 chr1 163819619 163819810 -33375622 - B2_Mm1t SINE B2 0 193 1 5 1834 2936 41 79 0 chr1 163820374 163820741 -33374691 + MTA_Mm LTR MaLR 1 396 0 5 1834 225 200 20 20 chr1 163821568 163821619 -33373813 + GA-rich Low_complexity Low_complexity 4 54 0 5 1834 221 217 29 0 chr1 163821716 163821785 -33373647 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1834 298 276 87 130 chr1 163822253 163822461 -33372971 + MTEa LTR MaLR 171 378 -1 5 1834 360 64 0 0 chr1 163822485 163822532 -33372900 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1834 212 250 16 0 chr1 163822539 163822603 -33372829 + CT-rich Low_complexity Low_complexity 2 66 0 5 1834 635 150 42 0 chr1 163823109 163823229 -33372203 - Lx6 LINE L1 -10 7450 7326 5 1834 328 83 50 0 chr1 163824053 163824113 -33371319 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 5 1834 243 250 0 45 chr1 163824129 163824196 -33371236 + Lx7 LINE L1 7629 7692 -4 5 1834 550 310 25 19 chr1 163825347 163825508 -33369924 + RSINE1 SINE B4 4 165 0 5 1834 218 360 126 19 chr1 163825525 163825740 -33369692 + MIRb SINE MIR 17 254 -14 5 1834 407 248 0 44 chr1 163826149 163826263 -33369169 - PB1D7 SINE Alu -7 113 5 5 1834 351 0 0 0 chr1 163826868 163826907 -33368525 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1834 709 268 19 6 chr1 163826939 163827097 -33368335 - RSINE1 SINE B4 -2 163 4 5 1834 3096 63 5 2 chr1 163827966 163828361 -33367071 - MTA_Mm LTR MaLR 0 396 1 5 1834 207 271 0 17 chr1 163828728 163828788 -33366644 + CT-rich Low_complexity Low_complexity 2 60 0 5 1834 349 293 20 20 chr1 163829131 163829232 -33366200 - RSINE1 SINE B4 -40 125 25 5 1834 2975 153 6 42 chr1 163829246 163829792 -33365640 + RLTR12B LTR ERVK 1 526 -2 5 1834 790 304 50 81 chr1 163830688 163830985 -33364447 - B4 SINE B4 -3 289 2 5 1834 1914 259 117 74 chr1 163831002 163831828 -33363604 - RCHARR1 DNA MER1_type -66 908 47 5 1834 195 42 0 0 chr1 163831901 163831925 -33363507 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 1834 274 207 0 65 chr1 163833790 163833852 -33361580 - B3 SINE B2 -37 179 122 5 1834 352 155 0 0 chr1 163833850 163833908 -33361524 + B3 SINE B2 139 196 -20 5 1834 654 153 0 0 chr1 163833918 163834029 -33361403 - B1_Mus1 SINE Alu 0 148 38 5 1834 600 217 8 0 chr1 163834027 163834147 -33361285 - B3 SINE B2 -95 121 1 5 1834 198 71 0 0 chr1 163834483 163834511 -33360921 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1834 450 0 0 0 chr1 163835562 163835612 -33359820 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1834 429 20 0 0 chr1 163835612 163835661 -33359771 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1834 334 264 0 44 chr1 163835691 163835782 -33359650 - RSINE1 SINE B4 -71 94 8 5 1834 461 335 25 6 chr1 163836085 163836244 -33359188 + RSINE1 SINE B4 2 163 -2 5 1834 25 0 0 0 chr1 163836251 163836276 -33359156 + AT_rich Low_complexity Low_complexity 1 25 0 5 1834 816 265 9 19 chr1 163836521 163836736 -33358696 + B3 SINE B2 1 213 -3 5 1834 562 354 77 34 chr1 163837689 163838067 -33357365 - LTR16B LTR ERVL 0 463 70 5 1834 1267 127 21 5 chr1 163838766 163838956 -33356476 + B2_Mm2 SINE B2 2 194 -1 5 1834 189 94 0 0 chr1 163838959 163838991 -33356441 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 229 1855 113 66 10 chr1 163839856 163840160 -33355272 + ORR1A4 LTR MaLR 1 321 -8 5 1835 273 246 40 14 chr1 163840164 163840238 -33355194 - MLT1A1 LTR MaLR -294 114 39 5 1835 895 194 119 16 chr1 163841609 163841803 -33353629 + B3 SINE B2 3 216 0 5 1835 225 83 0 0 chr1 163841806 163841842 -33353590 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1835 452 86 0 14 chr1 163843362 163843433 -33351999 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 5 1835 1884 215 63 52 chr1 163844388 163844834 -33350598 + Lx5 LINE L1 6600 7050 0 5 1835 296 217 9 36 chr1 163845464 163845574 -33349858 + CT-rich Low_complexity Low_complexity 2 108 0 5 1835 252 146 0 0 chr1 163845589 163845611 -33349821 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1835 574 220 27 41 chr1 163845611 163845758 -33349674 - B1_Mus1 SINE Alu 0 148 4 5 1835 252 146 0 0 chr1 163845758 163845783 -33349649 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1835 306 0 0 0 chr1 163845931 163845965 -33349467 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1835 306 0 0 0 chr1 163848113 163848147 -33347285 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1835 715 252 86 45 chr1 163848149 163848369 -33347063 - B4A SINE B4 -46 246 18 5 1835 220 286 0 31 chr1 163848322 163848387 -33347045 - BC1_Mm scRNA scRNA -89 63 1 5 1835 453 88 38 0 chr1 163848651 163848731 -33346701 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 1835 211 40 0 0 chr1 163848731 163848756 -33346676 + (GGA)n Simple_repeat Simple_repeat 2 26 0 5 1835 578 324 33 14 chr1 163849488 163849709 -33345723 - B4A SINE B4 -4 288 67 5 1835 2323 137 87 32 chr1 163849709 163850145 -33345287 - RMER1B Other Other -42 1024 565 5 1835 340 229 0 0 chr1 163850162 163850232 -33345200 - B4A SINE B4 -221 71 2 5 1835 187 323 65 0 chr1 163850499 163850592 -33344840 - L2c LINE L2 -244 3143 3045 5 1835 203 333 37 12 chr1 163851608 163851690 -33343742 - L2b LINE L2 0 3375 3292 5 1835 297 0 0 0 chr1 163851835 163851868 -33343564 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1835 549 0 0 0 chr1 163851868 163851928 -33343504 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1835 608 246 8 38 chr1 163851995 163852126 -33343306 - RSINE1 SINE B4 -30 135 9 5 1835 771 191 21 28 chr1 163854339 163854484 -33340948 - B1_Mur2 SINE Alu -4 145 2 5 1835 188 302 48 0 chr1 163856244 163856307 -33339125 + L2b LINE L2 3310 3375 0 5 1835 384 22 0 0 chr1 163856551 163856596 -33338836 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1835 642 269 21 0 chr1 163856611 163856752 -33338680 + B1F SINE Alu 1 144 -5 5 1835 990 236 58 48 chr1 163856753 163856967 -33338465 + Lx7 LINE L1 7101 7306 -390 5 1835 1028 115 127 0 chr1 163856967 163857132 -33338300 - B2_Mm2 SINE B2 -8 187 2 5 1835 990 236 58 48 chr1 163857132 163857229 -33338203 + Lx7 LINE L1 7307 7415 -281 5 1835 260 253 12 60 chr1 163857874 163857958 -33337474 - MIRb SINE MIR -56 212 133 5 1835 342 0 0 0 chr1 163857961 163857999 -33337433 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1835 306 0 0 0 chr1 163859530 163859564 -33335868 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1835 416 297 43 7 chr1 163859599 163859738 -33335694 - RSINE1 SINE B4 -19 146 3 6 1835 329 333 28 21 chr1 163860210 163860354 -33335078 + RMER15 LTR ERVL 416 560 -15 6 1835 331 265 77 19 chr1 163860879 163860983 -33334449 + PB1D9 SINE Alu 3 112 -8 6 1835 180 0 0 0 chr1 163861405 163861425 -33334007 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1835 689 242 104 31 chr1 163862576 163862798 -33332634 - B4 SINE B4 -54 238 1 6 1835 36219 34 1 0 chr1 163862958 163868298 -33327134 + L1Md_T LINE L1 146 5589 -297 6 1835 9162 6 0 0 chr1 163868298 163869294 -33326138 + L1Md_T LINE L1 5590 6585 0 6 1835 222 62 0 0 chr1 163870657 163870689 -33324743 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1835 307 286 26 58 chr1 163870767 163870923 -33324509 + Charlie1b DNA MER1_type 367 517 -6 6 1835 242 304 0 0 chr1 163870930 163870986 -33324446 + G-rich Low_complexity Low_complexity 6 61 0 6 1835 23 33 0 0 chr1 163872900 163872930 -33322502 + AT_rich Low_complexity Low_complexity 1 30 0 6 1835 25481 158 58 28 chr1 163873411 163874605 -33320827 + Lx4B LINE L1 835 2047 -3830 6 1835 426 20 0 0 chr1 163874605 163874656 -33320776 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1835 25481 146 42 11 chr1 163874656 163876016 -33319416 + Lx4B LINE L1 2048 3470 -2407 6 1835 225 65 0 0 chr1 163876016 163876047 -33319385 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 6 1835 25481 156 38 9 chr1 163876047 163879422 -33316010 + Lx4B LINE L1 3471 6992 -66 6 1835 429 141 0 0 chr1 163879471 163879542 -33315890 + (GGA)n Simple_repeat Simple_repeat 1 71 0 6 1835 1123 88 0 13 chr1 163880035 163880185 -33315247 - B1_Mus1 SINE Alu 0 148 1 6 1835 892 175 235 0 chr1 163880426 163880609 -33314823 + URR1A DNA MER1_type 1 226 0 6 1835 388 241 124 40 chr1 163880952 163881129 -33314303 + B3A SINE B2 2 193 -5 6 1835 333 0 0 0 chr1 163882110 163882147 -33313285 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1835 811 300 104 56 chr1 163884174 163884838 -33310594 - L1MA4 LINE L1 -182 6118 5423 6 1835 998 285 164 16 chr1 163884905 163885539 -33309893 - L1MA4 LINE L1 -844 5299 4572 6 1835 197 83 0 27 chr1 163885574 163885611 -33309821 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1835 2122 136 75 68 chr1 163888455 163888959 -33306473 + RLTR31A_Mm LTR ERVK 1 557 0 6 1835 517 317 78 66 chr1 163889259 163889607 -33305825 - ORR1E LTR MaLR 0 359 8 6 1835 285 29 0 0 chr1 163889734 163889768 -33305664 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1835 764 231 85 45 chr1 163890164 163890417 -33305015 - MTE2a LTR MaLR -17 402 124 6 1835 1017 45 0 0 chr1 163890546 163890679 -33304753 - B1_Mm SINE Alu 0 147 15 6 1835 464 32 0 16 chr1 163891246 163891309 -33304123 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1835 27 62 0 0 chr1 163891955 163892003 -33303429 + AT_rich Low_complexity Low_complexity 1 48 0 6 1835 369 95 0 0 chr1 163893100 163893163 -33302269 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 6 1835 198 0 0 0 chr1 163893372 163893394 -33302038 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1835 261 0 0 0 chr1 163897145 163897174 -33298258 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1835 210 143 0 0 chr1 163897901 163897936 -33297496 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1835 655 280 42 0 chr1 163898206 163898395 -33297037 + B3A SINE B2 2 198 0 6 1835 324 0 0 0 chr1 163898950 163898986 -33296446 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1835 288 258 129 0 chr1 163901820 163901913 -33293519 - RSINE1 SINE B4 -60 105 1 6 1835 183 80 0 0 chr1 163903567 163903592 -33291840 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1835 1216 152 13 26 chr1 163904299 163904528 -33290904 + URR1A DNA MER1_type 1 226 0 6 1835 912 146 7 18 chr1 163905694 163905969 -33289463 + GA-rich Low_complexity Low_complexity 1 271 0 6 1835 209 284 123 0 chr1 163906942 163907023 -33288409 - MIRb SINE MIR -63 205 115 6 1835 337 266 169 51 chr1 163908496 163908571 -33286861 - B4A SINE B4 0 292 94 6 1835 513 142 30 8 chr1 163908571 163908674 -33286758 - B1_Mus2 SINE Alu 0 117 9 6 1835 389 297 99 0 chr1 163908683 163908865 -33286567 - B4A SINE B4 -58 234 35 6 1835 766 231 81 92 chr1 163910801 163911096 -33284336 + B4A SINE B4 1 292 0 6 1835 24 32 0 0 chr1 163911795 163911826 -33283606 + AT_rich Low_complexity Low_complexity 1 31 0 6 1835 423 0 0 0 chr1 163912168 163912215 -33283217 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1835 328 250 90 0 chr1 163912362 163912462 -33282970 + PB1D10 SINE Alu 1 109 -8 6 1835 21 71 0 0 chr1 163912580 163912622 -33282810 + AT_rich Low_complexity Low_complexity 1 42 0 6 1835 189 48 45 45 chr1 163912773 163912817 -33282615 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1835 341 43 27 54 chr1 163914096 163914170 -33281262 + (CAA)n Simple_repeat Simple_repeat 2 73 0 6 1835 261 0 0 0 chr1 163915451 163915480 -33279952 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1835 360 0 0 0 chr1 163915834 163915874 -33279558 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1835 1266 27 0 0 chr1 163916144 163916290 -33279142 + B1_Mm SINE Alu 2 147 0 6 1835 221 53 53 0 chr1 163917235 163917273 -33278159 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1835 573 324 11 6 chr1 163924242 163924419 -33271013 - B3A SINE B2 -20 178 1 6 1835 705 129 0 0 chr1 163926851 163926967 -33268465 + (TG)n Simple_repeat Simple_repeat 2 117 0 6 1835 698 234 94 80 chr1 163926968 163927256 -33268176 - B4A SINE B4 0 292 1 6 1835 24 0 0 0 chr1 163927622 163927646 -33267786 + AT_rich Low_complexity Low_complexity 1 24 0 6 1835 327 177 0 0 chr1 163927670 163927732 -33267700 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1835 268 83 0 40 chr1 163927921 163927971 -33267461 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1835 222 37 0 0 chr1 163928558 163928585 -33266847 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1835 192 234 0 0 chr1 163928586 163928633 -33266799 + GA-rich Low_complexity Low_complexity 3 49 0 6 1835 785 79 0 9 chr1 163928631 163928668 -33266764 + (GAA)n Simple_repeat Simple_repeat 3 39 0 6 1835 1571 0 6 0 chr1 163928668 163928847 -33266585 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1835 785 79 0 9 chr1 163928847 163928924 -33266508 + (GAA)n Simple_repeat Simple_repeat 1 77 0 6 1835 271 309 27 9 chr1 163929366 163929477 -33265955 + CT-rich Low_complexity Low_complexity 4 116 0 6 1835 995 112 3 3 chr1 163930685 163930993 -33264439 + (CA)n Simple_repeat Simple_repeat 1 308 0 6 1835 388 373 0 0 chr1 163933182 163933324 -33262108 + ID_B1 SINE B4 83 224 0 6 1835 418 182 45 0 chr1 163933565 163933653 -33261779 - B1F SINE Alu -16 133 42 6 1835 256 185 0 36 chr1 163933606 163933662 -33261770 - 4.5SRNA scRNA scRNA -8 86 33 6 1835 591 15 0 0 chr1 163938362 163938430 -33257002 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 1835 392 317 48 0 chr1 163939375 163939520 -33255912 + MER20 DNA MER1_type 22 173 -46 6 1835 22 0 0 0 chr1 163940874 163940896 -33254536 + AT_rich Low_complexity Low_complexity 1 22 0 6 1835 28 71 0 0 chr1 163941330 163941386 -33254046 + AT_rich Low_complexity Low_complexity 1 56 0 6 1835 260 111 22 0 chr1 163941538 163941583 -33253849 + (TATG)n Simple_repeat Simple_repeat 2 47 0 6 1835 216 0 0 0 chr1 163942546 163942570 -33252862 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1835 245 29 29 0 chr1 163942570 163942603 -33252829 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1835 330 87 0 0 chr1 163942803 163942849 -33252583 + (CATA)n Simple_repeat Simple_repeat 2 47 0 6 1835 304 264 108 45 chr1 163943797 163943908 -33251524 + RSINE1 SINE B4 5 122 -43 6 1835 213 94 0 0 chr1 163944392 163944424 -33251008 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1835 495 0 0 0 chr1 163944799 163944854 -33250578 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1835 338 263 101 8 chr1 163946853 163946972 -33248460 + MIRc SINE MIR 21 150 -118 6 1835 426 287 19 0 chr1 163949415 163949523 -33245909 + PB1D7 SINE Alu 5 114 -6 6 1835 260 154 19 0 chr1 163951569 163951621 -33243811 + (CTA)n Simple_repeat Simple_repeat 3 55 0 6 1835 913 272 105 56 chr1 163952799 163953537 -33241895 + L1MA4 LINE L1 5125 5903 -397 6 1835 567 71 0 0 chr1 163953569 163953654 -33241778 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1835 439 255 29 10 chr1 163954593 163954696 -33240736 - RSINE1 SINE B4 -50 115 11 6 1835 1431 140 22 9 chr1 163956515 163956738 -33238694 - URR1A DNA MER1_type 0 226 1 6 1835 428 246 45 0 chr1 163956850 163956960 -33238472 - B3A SINE B2 -83 115 1 6 1835 410 207 0 99 chr1 163957164 163957255 -33238177 - PB1D10 SINE Alu 0 117 36 6 1835 1486 270 26 8 chr1 163957724 163958112 -33237320 + Lx8 LINE L1 6930 7324 -149 6 1835 183 80 0 0 chr1 163958157 163958182 -33237250 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1835 228 259 18 18 chr1 163958382 163958437 -33236995 + B1_Mur1 SINE Alu 85 139 -10 6 1835 306 0 0 0 chr1 163958698 163958732 -33236700 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1835 617 219 16 0 chr1 163958733 163958856 -33236576 + ID_B1 SINE B4 100 224 0 6 1835 291 114 0 0 chr1 163958856 163958900 -33236532 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1835 261 362 60 108 chr1 163959389 163959640 -33235792 + MIRb SINE MIR 23 261 -7 6 1835 291 320 75 6 chr1 163960193 163960366 -33235066 + L1MA4 LINE L1 2270 2454 -3426 6 1835 2625 307 75 16 chr1 163960432 163961895 -33233537 + L1MA4 LINE L1 4147 5687 -190 6 1835 1484 270 37 23 chr1 163961941 163962370 -33233062 + Lx9 LINE L1 6362 6796 -848 6 1835 823 276 144 60 chr1 163962369 163963037 -33232395 + Lx9 LINE L1 6920 7643 -1 6 1835 23 0 0 0 chr1 163963042 163963065 -33232367 + AT_rich Low_complexity Low_complexity 1 23 0 6 1835 405 306 20 7 chr1 163963069 163963217 -33232215 + L1MA4 LINE L1 5769 5918 -382 6 1835 315 122 0 0 chr1 163963502 163963551 -33231881 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 7 1835 556 298 92 95 chr1 163964699 163965047 -33230385 - MLT1A0 LTR MaLR 0 365 19 7 1835 695 179 7 0 chr1 163965162 163965302 -33230130 + (TA)n Simple_repeat Simple_repeat 1 141 0 7 1835 199 355 26 26 chr1 163965780 163965893 -33229539 - MER5B DNA MER1_type -29 149 37 7 1835 326 61 20 0 chr1 163966227 163966276 -33229156 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1835 201 133 0 0 chr1 163967134 163967164 -33228268 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1835 378 0 0 0 chr1 163968566 163968608 -33226824 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 1835 252 122 0 0 chr1 163968945 163968986 -33226446 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 7 1835 254 181 2 0 chr1 163969654 163969707 -33225725 + B1_Mur4 SINE Alu 12 66 -84 7 1835 639 39 0 0 chr1 163969804 163969882 -33225550 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 229 897 291 143 30 chr1 163970498 163971219 -33224213 - L1MC4 LINE L1 -285 7597 6774 7 1836 373 220 50 99 chr1 163971382 163971503 -33223929 + PB1D10 SINE Alu 3 117 0 7 1836 872 313 69 55 chr1 163971523 163971942 -33223490 + Lx8 LINE L1 6964 7388 -85 7 1836 381 149 0 0 chr1 163972222 163972289 -33223143 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 7 1836 324 0 0 0 chr1 163972316 163972352 -33223080 + (CTCA)n Simple_repeat Simple_repeat 1 36 0 7 1836 429 20 0 0 chr1 163972372 163972422 -33223010 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1836 351 303 28 0 chr1 163973567 163973676 -33221756 - Tigger5 DNA MER2_type -1 2405 2294 7 1836 513 313 14 7 chr1 163973680 163973828 -33221604 - Tigger5 DNA MER2_type -2209 197 49 7 1836 965 76 0 8 chr1 163975998 163976131 -33219301 - B1_Mm SINE Alu 0 147 16 7 1836 753 144 22 0 chr1 163976419 163976558 -33218874 - URR1A DNA MER1_type -4 222 81 7 1836 192 111 0 0 chr1 163977490 163977526 -33217906 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1836 185 365 0 37 chr1 163977749 163977803 -33217629 + MIRm SINE MIR 27 78 -198 7 1836 777 258 155 65 chr1 163977871 163978207 -33217225 + ORR1D2 LTR MaLR 3 368 -2 7 1836 252 122 0 0 chr1 163979159 163979200 -33216232 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1836 584 269 7 21 chr1 163979201 163979345 -33216087 - RSINE1 SINE B4 -22 143 2 7 1836 342 352 47 0 chr1 163979729 163979857 -33215575 - B1F2 SINE Alu -15 134 1 7 1836 230 355 13 0 chr1 163979796 163979872 -33215560 - B4 SINE B4 -146 146 70 7 1836 234 234 105 105 chr1 163980213 163980273 -33215159 + YREP_Mm Unknown Unknown 117 293 -1515 7 1836 958 43 0 0 chr1 163980273 163980390 -33215042 - B1_Mm SINE Alu -6 141 25 7 1836 383 200 0 101 chr1 163980312 163980401 -33215031 - MT2B LTR ERVL -344 257 178 7 1836 7041 70 18 11 chr1 163980742 163981671 -33213761 - L1Md_F2 LINE L1 0 6582 5647 7 1836 21 57 0 0 chr1 163981742 163981777 -33213655 + AT_rich Low_complexity Low_complexity 1 35 0 7 1836 797 292 55 17 chr1 163981938 163982175 -33213257 + B4A SINE B4 14 259 -33 7 1836 513 0 0 0 chr1 163982177 163982234 -33213198 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1836 306 0 0 0 chr1 163983058 163983092 -33212340 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1836 219 114 0 0 chr1 163983224 163983259 -33212173 + (TATG)n Simple_repeat Simple_repeat 4 38 0 7 1836 743 225 13 50 chr1 163984381 163984540 -33210892 - RSINE1 SINE B4 0 165 13 7 1836 251 282 13 0 chr1 163984842 163984920 -33210512 + CT-rich Low_complexity Low_complexity 3 81 0 7 1836 534 242 45 30 chr1 163985269 163985401 -33210031 - Tigger7 DNA MER2_type -24 2467 2334 7 1836 1561 31 0 5 chr1 163985408 163985600 -33209832 + MTA_Mm LTR MaLR 1 191 -205 7 1836 934 193 113 55 chr1 163985767 163986024 -33209408 - B4A SINE B4 -19 273 2 7 1836 198 258 52 25 chr1 163988009 163988095 -33207337 - L2b LINE L2 -5 3382 3291 7 1836 1083 16 8 0 chr1 163988451 163988580 -33206852 - MTA_Mm LTR MaLR 0 396 267 7 1836 266 109 0 42 chr1 163989284 163989332 -33206100 + B1_Mur4 SINE Alu 104 149 -1 7 1836 324 0 0 0 chr1 163989482 163989518 -33205914 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1836 1806 174 120 5 chr1 163989832 163990112 -33205320 - MTC LTR MaLR -2 419 127 7 1836 2636 102 28 114 chr1 163990112 163990577 -33204855 + Lx LINE L1 6229 6653 -1 7 1836 1806 174 120 5 chr1 163990577 163990672 -33204760 - MTC LTR MaLR -295 126 2 7 1836 29 28 0 0 chr1 163990875 163990911 -33204521 + AT_rich Low_complexity Low_complexity 1 36 0 7 1836 806 239 0 12 chr1 163991110 163991271 -33204161 - B3 SINE B2 -11 205 47 7 1836 303 260 14 0 chr1 163991568 163991641 -33203791 + Tigger1 DNA MER2_type 50 123 -2295 7 1836 330 87 0 0 chr1 163991654 163991700 -33203732 + (T)n Simple_repeat Simple_repeat 1 46 0 7 1836 35 24 0 0 chr1 163991725 163991767 -33203665 + AT_rich Low_complexity Low_complexity 1 42 0 7 1836 421 239 90 64 chr1 163991773 163991961 -33203471 - B3 SINE B2 -11 205 13 7 1836 682 250 34 28 chr1 163991970 163992147 -33203285 + Tigger1 DNA MER2_type 2240 2417 -1 7 1836 1186 97 0 0 chr1 163992153 163992298 -33203134 + B1_Mur4 SINE Alu 1 145 -5 7 1836 623 320 159 63 chr1 163992379 163992645 -33202787 - MER44D DNA MER2_type -5 700 440 7 1836 1100 269 33 11 chr1 163992645 163992916 -33202516 - B4 SINE B4 -14 278 2 7 1836 685 300 176 83 chr1 163992916 163993252 -33202180 - Tigger7 DNA MER2_type -266 439 40 7 1836 315 0 0 0 chr1 163993320 163993355 -33202077 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 7 1836 38849 32 0 0 chr1 163993715 164000000 -33195432 + L1Md_T LINE L1 1 6291 -294 7 1836 2655 3 0 0 chr1 164000000 164000294 -33195138 + L1Md_T LINE L1 6289 6582 0 1 1836 183 42 0 0 chr1 164001059 164001083 -33194349 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1836 1138 56 28 0 chr1 164001874 164002017 -33193415 + B1_Mus1 SINE Alu 2 148 0 3 1836 25 0 0 0 chr1 164002020 164002045 -33193387 + AT_rich Low_complexity Low_complexity 1 25 0 4 1836 227 31 0 30 chr1 164002309 164002342 -33193090 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 1836 378 0 0 0 chr1 164003692 164003734 -33191698 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1836 219 258 16 31 chr1 164003751 164003815 -33191617 + (TATG)n Simple_repeat Simple_repeat 2 64 0 7 1836 1143 275 29 7 chr1 164003821 164004096 -33191336 - B4 SINE B4 -11 281 1 8 1836 408 40 0 0 chr1 164004182 164004232 -33191200 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1836 447 35 0 0 chr1 164006332 164006389 -33189043 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1836 701 205 12 0 chr1 164006430 164006591 -33188841 + CT-rich Low_complexity Low_complexity 2 164 0 1 1836 1536 192 17 73 chr1 164008126 164008536 -33186896 + RMER10A LTR ERVL 56 442 0 1 1836 450 0 0 0 chr1 164008890 164008940 -33186492 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1836 230 263 37 73 chr1 164009867 164009949 -33185483 + RSINE1 SINE B4 87 165 0 1 1836 866 332 32 7 chr1 164010971 164011256 -33184176 - B4A SINE B4 0 292 1 1 1836 1780 26 0 0 chr1 164011315 164011507 -33183925 + B2_Mm1t SINE B2 2 193 0 1 1836 222 313 0 168 chr1 164012234 164012353 -33183079 - PB1 SINE Alu -9 118 20 1 1836 214 233 0 0 chr1 164013217 164013260 -33182172 + GA-rich Low_complexity Low_complexity 1 43 0 1 1836 343 222 0 27 chr1 164013278 164013463 -33181969 + GA-rich Low_complexity Low_complexity 1 180 0 1 1836 21 0 0 0 chr1 164013883 164013904 -33181528 + AT_rich Low_complexity Low_complexity 1 21 0 1 1836 234 23 22 44 chr1 164014921 164014966 -33180466 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1836 3384 192 62 26 chr1 164015226 164015967 -33179465 - MTC-int LTR MaLR -477 781 14 2 1836 1892 221 20 15 chr1 164015979 164016388 -33179044 - MTC LTR MaLR -10 411 1 2 1836 932 185 6 0 chr1 164017266 164017428 -33178004 - ORR1B2 LTR MaLR -8 359 197 2 1836 9740 6 0 0 chr1 164017428 164018504 -33176928 - L1_Mm LINE L1 -464 5419 4344 2 1836 1169 22 0 14 chr1 164018504 164018645 -33176787 + L1Md_A LINE L1 6444 6582 0 2 1836 1291 168 5 0 chr1 164018658 164018867 -33176565 - ORR1B2 LTR MaLR -157 210 1 2 1836 815 90 8 0 chr1 164019861 164019983 -33175449 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2 1836 762 283 87 24 chr1 164020167 164020577 -33174855 + Lx9 LINE L1 5696 6111 -1362 2 1836 200 222 0 0 chr1 164020706 164020742 -33174690 + polypurine Low_complexity Low_complexity 2 37 0 2 1836 793 193 44 0 chr1 164020762 164020897 -33174535 + B1_Mus2 SINE Alu 1 141 -6 2 1836 354 147 0 0 chr1 164021094 164021162 -33174270 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 2 1836 624 267 53 13 chr1 164021554 164021706 -33173726 + RSINE1 SINE B4 4 161 -4 3 1836 205 175 0 48 chr1 164021716 164021758 -33173674 + (CATA)n Simple_repeat Simple_repeat 1 40 0 3 1836 228 35 0 0 chr1 164022423 164022452 -33172980 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1836 1163 183 38 9 chr1 164022629 164022839 -33172593 + B3 SINE B2 1 216 0 3 1836 273 75 0 0 chr1 164022985 164023025 -33172407 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1836 530 99 11 0 chr1 164023361 164023452 -33171980 + (TC)n Simple_repeat Simple_repeat 2 93 0 3 1836 241 257 40 44 chr1 164023524 164023638 -33171794 - MIRb SINE MIR -121 147 17 3 1836 21 0 0 0 chr1 164023729 164023750 -33171682 + AT_rich Low_complexity Low_complexity 1 21 0 3 1836 410 280 0 9 chr1 164025341 164025449 -33169983 + PB1D10 SINE Alu 5 111 -6 3 1836 240 59 0 0 chr1 164025495 164025529 -33169903 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1836 405 0 0 0 chr1 164025866 164025911 -33169521 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1836 427 250 9 37 chr1 164025923 164026031 -33169401 - B4A SINE B4 -14 278 174 4 1836 806 215 7 0 chr1 164026122 164026266 -33169166 + B1_Mus1 SINE Alu 2 146 -2 4 1836 326 360 114 18 chr1 164026396 164026789 -33168643 + L2 LINE L2 1169 1599 -1820 4 1836 536 29 14 0 chr1 164027164 164027234 -33168198 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 1836 285 185 0 0 chr1 164028772 164028837 -33166595 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1836 604 217 1 3 chr1 164029058 164029174 -33166258 - B1_Mur1 SINE Alu -1 147 34 4 1836 251 353 9 47 chr1 164030602 164030709 -33164723 + LTR79 LTR ERVL 64 166 -361 4 1836 184 54 53 26 chr1 164032536 164032574 -33162858 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 4 1836 2686 140 9 16 chr1 164032985 164033456 -33161976 + L1_Mus1 LINE L1 6136 6567 0 4 1836 287 303 45 27 chr1 164033536 164033648 -33161784 - L2a LINE L2 -5 3421 3308 5 1836 653 301 96 134 chr1 164034559 164035656 -33159776 + L1MA4 LINE L1 4913 6023 -274 5 1836 639 112 0 0 chr1 164035682 164035798 -33159634 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 1836 228 359 101 62 chr1 164036467 164036675 -33158757 + MIRb SINE MIR 4 219 -49 5 1836 265 264 7 0 chr1 164038074 164038133 -33157299 - L2a LINE L2 -32 3394 3293 5 1836 221 392 89 23 chr1 164038221 164038435 -33156997 - L2b LINE L2 -236 3139 2912 5 1836 222 37 0 0 chr1 164039404 164039431 -33156001 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1836 182 37 37 0 chr1 164040544 164040571 -33154861 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5 1836 290 348 22 22 chr1 164041307 164041442 -33153990 + ORR1E LTR MaLR 20 154 -205 5 1836 1393 320 141 90 chr1 164042412 164044383 -33151049 + Charlie1 DNA MER1_type 10 2075 -706 5 1836 38839 30 0 0 chr1 164044385 164050674 -33144758 - L1Md_T LINE L1 0 6585 199 6 1836 1746 176 65 13 chr1 164050856 164051242 -33144190 + Charlie1 DNA MER1_type 2271 2676 -105 5 1836 280 200 33 0 chr1 164051410 164051470 -33143962 + Charlie1 DNA MER1_type 2705 2766 -15 5 1836 369 0 0 0 chr1 164051555 164051596 -33143836 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1836 267 173 0 0 chr1 164053076 164053128 -33142304 + GA-rich Low_complexity Low_complexity 2 53 0 6 1836 356 270 0 0 chr1 164054672 164054746 -33140686 + ID4 SINE ID 2 75 -8 6 1836 774 67 0 0 chr1 164055542 164055647 -33139785 + (TC)n Simple_repeat Simple_repeat 1 105 0 6 1836 444 171 0 0 chr1 164055651 164055733 -33139699 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1836 450 0 0 0 chr1 164055863 164055913 -33139519 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1836 372 335 108 17 chr1 164059556 164059787 -33135645 + L1MEf LINE L1 1095 1346 -4896 6 1836 1036 36 28 28 chr1 164060076 164060219 -33135213 + L1Md_F3 LINE L1 6442 6584 0 6 1836 24 0 0 0 chr1 164060533 164060557 -33134875 + AT_rich Low_complexity Low_complexity 1 24 0 6 1836 643 240 91 101 chr1 164060737 164060936 -33134496 - B3A SINE B2 0 198 2 7 1836 189 293 96 12 chr1 164061145 164061228 -33134204 + L2b LINE L2 3286 3375 0 7 1836 306 359 72 10 chr1 164061322 164061516 -33133916 + L1MEf LINE L1 2734 2939 -3207 6 1836 320 279 169 16 chr1 164061615 164061935 -33133497 + L1M5 LINE L1 3100 3468 -2678 7 1836 919 240 63 43 chr1 164062001 164062301 -33133131 + Lx8 LINE L1 7161 7466 -7 7 1836 305 329 97 31 chr1 164062352 164062735 -33132697 + L1M3 LINE L1 3520 3927 -2213 7 1836 687 271 11 6 chr1 164064392 164064553 -33130879 + ID_B1 SINE B4 80 243 -49 7 1836 23 0 0 0 chr1 164066422 164066445 -33128987 + AT_rich Low_complexity Low_complexity 1 23 0 7 1836 396 285 16 24 chr1 164067078 164067204 -33128228 + MER33 DNA MER1_type 10 134 -190 7 1836 975 245 41 0 chr1 164067238 164067434 -33127998 - B3 SINE B2 -11 205 2 7 1836 361 327 18 0 chr1 164067999 164068109 -33127323 + B1F2 SINE Alu 23 134 -15 7 1836 255 354 116 71 chr1 164068477 164069072 -33126360 + MamRep1161 DNA TcMar 336 957 0 8 1836 365 39 0 19 chr1 164069181 164069233 -33126199 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1836 573 297 144 84 chr1 164069351 164069405 -33126027 - MTEa LTR MaLR -14 365 321 8 1836 207 0 0 0 chr1 164069405 164069428 -33126004 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1836 1208 43 0 7 chr1 164069428 164069567 -33125865 - B1_Mus2 SINE Alu -9 138 1 8 1836 573 302 133 84 chr1 164069567 164069862 -33125570 - MTEa LTR MaLR -59 320 6 8 1836 181 238 58 81 chr1 164070042 164070129 -33125303 + L2c LINE L2 3251 3335 -52 8 1836 884 275 128 74 chr1 164070383 164070736 -33124696 + Lx9 LINE L1 6874 7245 -399 8 1836 318 80 0 0 chr1 164071124 164071174 -33124258 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 8 1836 318 229 686 0 chr1 164071599 164071717 -33123715 - RMER30 DNA MER1_type -2 200 2 8 1836 579 158 0 0 chr1 164075099 164075226 -33120206 + (CA)n Simple_repeat Simple_repeat 2 128 0 8 1836 1185 156 63 50 chr1 164077660 164077882 -33117550 + URR1B DNA MER1_type 1 225 0 9 1836 744 291 89 60 chr1 164079303 164079650 -33115782 + ORR1E LTR MaLR 3 359 0 9 1836 3369 147 94 28 chr1 164079843 164080416 -33115016 + RMER19C LTR ERVK 1 611 0 9 1836 222 118 0 0 chr1 164080659 164080693 -33114739 + (GGA)n Simple_repeat Simple_repeat 3 36 0 9 1836 279 0 0 0 chr1 164080726 164080757 -33114675 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1836 1110 74 7 0 chr1 164080757 164080892 -33114540 - B1_Mus2 SINE Alu -10 137 2 9 1836 2669 149 12 12 chr1 164081956 164082377 -33113055 + MTC LTR MaLR 1 421 0 9 1836 1148 162 107 5 chr1 164082468 164082673 -33112759 + URR1A DNA MER1_type 1 226 0 9 1836 22 35 0 0 chr1 164085506 164085535 -33109897 + AT_rich Low_complexity Low_complexity 1 29 0 9 1836 468 272 176 0 chr1 164086390 164086526 -33108906 + RSINE1 SINE B4 3 162 -3 9 1836 180 111 0 0 chr1 164086959 164086986 -33108446 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1836 231 208 0 36 chr1 164087039 164087094 -33108338 - LTR81C LTR ERV1? -665 488 436 1 1836 201 39 0 0 chr1 164088698 164088724 -33106708 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 1 1836 691 212 30 0 chr1 164088724 164088856 -33106576 - B1_Mur1 SINE Alu -13 136 1 1 1836 618 216 0 9 chr1 164088856 164088967 -33106465 - PB1D10 SINE Alu -3 114 4 1 1836 207 224 0 20 chr1 164090154 164090204 -33105228 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1 1836 241 122 49 0 chr1 164092495 164092536 -33102896 - B1_Mus2 SINE Alu -44 103 61 1 1836 189 0 0 0 chr1 164092730 164092751 -33102681 + (CCTTG)n Simple_repeat Simple_repeat 5 25 0 1 1836 192 330 52 60 chr1 164092860 164092976 -33102456 + MIR3 SINE MIR 66 180 -28 1 1836 441 161 0 0 chr1 164095508 164095595 -33099837 + CT-rich Low_complexity Low_complexity 1 87 0 1 1836 252 106 0 0 chr1 164095594 164095609 -33099823 + (CA)n Simple_repeat Simple_repeat 1 15 0 1 1836 351 44 0 0 chr1 164095609 164095654 -33099778 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1836 252 106 0 0 chr1 164095654 164095685 -33099747 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1836 305 286 40 40 chr1 164095755 164095879 -33099553 + MIRc SINE MIR 84 207 -61 1 1836 1045 307 16 13 chr1 164095955 164096259 -33099173 + Tigger7 DNA MER2_type 2 306 -2185 1 1836 788 322 90 19 chr1 164096262 164096585 -33098847 + Tigger7 DNA MER2_type 2133 2478 -13 1 1836 289 353 79 26 chr1 164096834 164097099 -33098333 - B4A SINE B4 -13 279 1 1 1836 322 308 121 90 chr1 164097246 164097592 -33097840 + MLT1A0 LTR MaLR 7 363 -2 1 1836 182 86 86 0 chr1 164097723 164097758 -33097674 + CT-rich Low_complexity Low_complexity 6 43 0 1 1836 473 272 65 87 chr1 164097785 164097970 -33097462 - B3A SINE B2 -16 182 2 1 1836 339 323 143 31 chr1 164098197 164098421 -33097011 - MLT1B LTR MaLR -138 252 4 1 1836 602 268 13 13 chr1 164098709 164098864 -33096568 - MLT2D LTR ERVL 0 560 406 1 1836 230 232 70 47 chr1 164098912 164098998 -33096434 - MLT2D LTR ERVL -283 131 44 1 1836 386 357 95 36 chr1 164100405 164100710 -33094722 + Charlie1 DNA MER1_type 1451 1773 -1008 1 1836 207 167 0 0 chr1 164101137 164101179 -33094253 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1 229 4548 201 47 89 chr1 164101421 164102485 -33092947 + RMER1B Other Other 44 1062 -4 1 1837 216 293 0 0 chr1 164103649 164103707 -33091725 + PB1D9 SINE Alu 63 120 0 1 1837 2435 292 104 37 chr1 164104021 164105333 -33090099 + L1MC2 LINE L1 3400 4799 -1347 1 1837 572 225 0 6 chr1 164105333 164105494 -33089938 + GA-rich Low_complexity Low_complexity 3 162 0 1 1837 716 232 188 0 chr1 164105667 164105848 -33089584 - B3 SINE B2 -1 215 1 1 1837 307 296 45 80 chr1 164105852 164106076 -33089356 + L1MC2 LINE L1 4967 5182 -964 1 1837 1465 239 41 20 chr1 164106105 164106503 -33088929 - MTE2b LTR MaLR -14 405 2 1 1837 975 324 67 17 chr1 164106636 164107101 -33088331 + Lx8 LINE L1 6935 7422 -51 1 1837 2230 279 60 43 chr1 164107230 164108229 -33087203 + L1MC2 LINE L1 5329 6344 0 1 1837 567 342 25 25 chr1 164108314 164108328 -33087104 - B4A SINE B4 -6 286 275 1 1837 330 87 0 0 chr1 164108328 164108374 -33087058 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1837 567 342 25 25 chr1 164108374 164108544 -33086888 - B4A SINE B4 -18 274 103 1 1837 282 286 0 28 chr1 164108544 164108616 -33086816 - ID2 SINE ID -12 71 2 1 1837 567 342 25 25 chr1 164108616 164108634 -33086798 - B4A SINE B4 -190 102 84 1 1837 32 26 0 0 chr1 164108634 164108673 -33086759 + AT_rich Low_complexity Low_complexity 1 39 0 1 1837 204 67 0 0 chr1 164109093 164109123 -33086309 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1837 219 315 142 66 chr1 164109188 164109385 -33086047 + MIR SINE MIR 28 239 -23 1 1837 1211 65 0 0 chr1 164110196 164110335 -33085097 + B1_Mus2 SINE Alu 3 141 -6 1 1837 272 27 27 0 chr1 164110346 164110383 -33085049 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 1 1837 195 114 0 0 chr1 164110605 164110640 -33084792 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1837 186 71 0 0 chr1 164111400 164111428 -33084004 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1837 1492 131 9 9 chr1 164112565 164112788 -33082644 - URR1B DNA MER1_type 0 225 3 1 1837 186 71 0 0 chr1 164113898 164113926 -33081506 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1837 250 302 63 28 chr1 164114672 164114815 -33080617 - L2 LINE L2 -562 2857 2710 1 1837 740 305 15 20 chr1 164116176 164116380 -33079052 + ID_B1 SINE B4 2 204 -20 1 1837 315 71 0 0 chr1 164117521 164117563 -33077869 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1837 549 167 0 0 chr1 164119946 164120048 -33075384 + CT-rich Low_complexity Low_complexity 3 104 0 1 1837 259 303 50 0 chr1 164120182 164120281 -33075151 - RMER12 LTR ERVK -477 845 742 1 1837 231 230 29 39 chr1 164121018 164121122 -33074310 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 1 1837 560 292 221 11 chr1 164121471 164121738 -33073694 - MLT1D LTR MaLR 0 505 183 1 1837 225 241 180 27 chr1 164122046 164122157 -33073275 + L1ME2z LINE L1 6314 6441 -3 1 1837 249 283 0 0 chr1 164123928 164123988 -33071444 - B4A SINE B4 -144 148 89 1 1837 228 268 28 0 chr1 164123982 164124053 -33071379 - ID SINE ID -149 75 3 1 1837 227 227 0 25 chr1 164125150 164125271 -33070161 + GA-rich Low_complexity Low_complexity 1 117 0 1 1837 932 179 0 0 chr1 164125883 164126023 -33069409 - B1_Mus2 SINE Alu -6 141 2 1 1837 257 308 12 37 chr1 164126319 164126400 -33069032 + ID4_ SINE ID 5 83 0 1 1837 315 0 0 0 chr1 164128632 164128667 -33066765 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1837 236 296 159 0 chr1 164128784 164128916 -33066516 - L2c LINE L2 -107 3280 3128 1 1837 604 252 86 57 chr1 164128922 164129132 -33066300 + B3A SINE B2 1 216 0 1 1837 320 288 58 47 chr1 164129309 164129575 -33065857 + L1MA4A LINE L1 5751 6028 -272 1 1837 653 320 108 8 chr1 164130215 164130473 -33064959 - B4A SINE B4 -1 291 8 1 1837 384 59 0 0 chr1 164131897 164131948 -33063484 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1837 225 0 0 0 chr1 164132015 164132040 -33063392 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1837 679 312 19 27 chr1 164133978 164134238 -33061194 - Lx9 LINE L1 -695 6949 6692 1 1837 1730 194 63 30 chr1 164134420 164134787 -33060645 + RMER1B Other Other 677 1055 -11 1 1837 319 278 34 25 chr1 164135581 164135699 -33059733 + GA-rich Low_complexity Low_complexity 3 121 0 1 1837 285 246 163 39 chr1 164136159 164136337 -33059095 - MIRb SINE MIR -2 266 67 1 1837 216 0 0 0 chr1 164137073 164137097 -33058335 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1837 396 0 0 0 chr1 164138457 164138501 -33056931 + (CCA)n Simple_repeat Simple_repeat 1 44 0 1 1837 376 265 234 65 chr1 164138869 164139182 -33056250 + ORR1E LTR MaLR 9 374 -5 1 1837 333 0 0 0 chr1 164140488 164140525 -33054907 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1837 492 18 0 0 chr1 164140525 164140581 -33054851 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1837 352 238 26 33 chr1 164141192 164141344 -33054088 + (CATATA)n Simple_repeat Simple_repeat 6 156 0 1 1837 212 311 93 19 chr1 164141750 164141858 -33053574 - MIR SINE MIR -134 128 13 1 1837 218 191 71 0 chr1 164142692 164142734 -33052698 + B2_Mm1t SINE B2 1 45 -148 1 1837 435 267 179 33 chr1 164142738 164142889 -33052543 + B4A SINE B4 112 284 -8 1 1837 1032 53 8 0 chr1 164144490 164144622 -33050810 + L1_Mus1 LINE L1 6434 6566 -1 1 1837 203 227 214 11 chr1 164144675 164144764 -33050668 + MIRc SINE MIR 60 166 -102 1 1837 581 40 0 13 chr1 164147177 164147254 -33048178 + (GGA)n Simple_repeat Simple_repeat 3 78 0 1 1837 243 0 0 0 chr1 164148957 164148984 -33046448 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1837 23 0 0 0 chr1 164149526 164149549 -33045883 + AT_rich Low_complexity Low_complexity 1 23 0 1 1837 23 33 0 0 chr1 164149947 164149977 -33045455 + AT_rich Low_complexity Low_complexity 1 30 0 1 1837 38 0 0 0 chr1 164151715 164151753 -33043679 + AT_rich Low_complexity Low_complexity 1 38 0 1 1837 441 0 0 0 chr1 164157050 164157099 -33038333 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1 1837 180 390 13 0 chr1 164157399 164157476 -33037956 + L2a LINE L2 3318 3395 -31 1 1837 346 367 73 41 chr1 164158193 164158412 -33037020 - MER115 DNA Tip100 -326 367 142 1 1837 184 308 159 6 chr1 164159164 164159321 -33036111 - MIRc SINE MIR -87 181 1 1 1837 338 0 0 23 chr1 164159652 164159695 -33035737 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1837 1667 176 30 76 chr1 164160301 164160669 -33034763 - ORR1C2 LTR MaLR -31 353 3 1 1837 261 0 0 0 chr1 164163629 164163658 -33031774 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1837 423 0 0 0 chr1 164163888 164163935 -33031497 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1837 595 183 15 0 chr1 164163957 164164088 -33031344 + (TA)n Simple_repeat Simple_repeat 1 133 0 1 1837 306 0 0 0 chr1 164164119 164164153 -33031279 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1837 257 258 274 49 chr1 164164321 164164423 -33031009 + RSINE1 SINE B4 12 136 -29 1 1837 340 288 17 35 chr1 164164876 164164991 -33030441 - ID_B1 SINE B4 -30 194 82 1 1837 329 268 157 0 chr1 164165158 164165356 -33030076 + Charlie5 DNA MER1_type 2346 2574 -50 1 1837 244 0 48 97 chr1 164165960 164166022 -33029410 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1837 565 203 214 71 chr1 164166685 164166881 -33028551 + URR1B DNA MER1_type 2 225 0 1 1837 471 122 0 0 chr1 164167164 164167254 -33028178 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1837 339 291 0 0 chr1 164167254 164167381 -33028051 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 1837 558 198 0 0 chr1 164167394 164167561 -33027871 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1837 675 185 0 0 chr1 164167578 164167729 -33027703 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 1837 276 259 86 69 chr1 164168125 164168241 -33027191 + PB1D7 SINE Alu 1 118 -2 1 1837 221 109 0 21 chr1 164168561 164168596 -33026836 + (TTC)n Simple_repeat Simple_repeat 1 35 0 2 1837 1154 106 0 11 chr1 164168596 164168778 -33026654 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1837 221 109 0 21 chr1 164168778 164168789 -33026643 + (TTC)n Simple_repeat Simple_repeat 2 12 0 2 1837 252 358 0 40 chr1 164171126 164171251 -33024181 - MIRb SINE MIR -23 245 126 2 1837 238 280 135 8 chr1 164171534 164171660 -33023772 + MIR SINE MIR 74 215 -47 2 1837 216 348 65 40 chr1 164173390 164173743 -33021689 - L2 LINE L2 -612 2807 2446 2 1837 194 0 0 37 chr1 164174478 164174505 -33020927 + (TCCCC)n Simple_repeat Simple_repeat 1 26 0 2 1837 2536 129 24 98 chr1 164175016 164175295 -33020137 + MT2_Mm LTR ERVL 1 231 -262 2 1837 6341 40 0 1 chr1 164175295 164176046 -33019386 - L1Md_T LINE L1 0 6582 5833 2 1837 2536 129 24 98 chr1 164176046 164176298 -33019134 + MT2_Mm LTR ERVL 232 493 0 2 1837 1194 49 7 0 chr1 164176455 164176599 -33018833 + B1_Mus2 SINE Alu 2 146 -1 2 1837 1060 139 10 46 chr1 164176619 164176815 -33018617 - URR1A DNA MER1_type -36 190 2 2 1837 432 0 0 0 chr1 164176906 164176954 -33018478 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1837 665 253 61 11 chr1 164177854 164178034 -33017398 - B3 SINE B2 -27 189 1 2 1837 570 79 0 0 chr1 164178613 164178702 -33016730 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 1837 330 45 0 0 chr1 164178702 164178746 -33016686 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1837 539 266 79 82 chr1 164178974 164179253 -33016179 + B4 SINE B4 2 279 -13 2 1837 180 0 0 0 chr1 164179254 164179274 -33016158 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1837 222 330 60 28 chr1 164181858 164182033 -33013399 + MIRb SINE MIR 45 225 -37 2 1837 270 0 0 0 chr1 164183327 164183357 -33012075 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1837 374 167 30 0 chr1 164183419 164183485 -33011947 - URR1A DNA MER1_type -102 124 57 2 1837 280 295 11 11 chr1 164187468 164187557 -33007875 + PB1D10 SINE Alu 7 95 -22 2 1837 3570 312 68 43 chr1 164189480 164190017 -33005415 + Lx8 LINE L1 5645 6173 -1300 2 1837 468 0 0 0 chr1 164190017 164190069 -33005363 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1837 3570 312 68 43 chr1 164190069 164191287 -33004145 + Lx8 LINE L1 6174 7443 -30 2 1837 1420 89 16 0 chr1 164191476 164191667 -33003765 + B2_Mm2 SINE B2 2 195 0 2 1837 423 0 0 0 chr1 164191804 164191851 -33003581 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1837 259 302 0 0 chr1 164191852 164191915 -33003517 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1837 559 99 11 0 chr1 164192106 164192197 -33003235 + L1Md_T LINE L1 6491 6582 0 2 1837 42095 5 0 0 chr1 164194164 164200746 -32994686 - L1Md_A LINE L1 0 6582 1 2 1837 299 244 25 0 chr1 164202766 164202857 -32992575 - B1F1 SINE Alu -17 132 40 2 1837 297 0 0 0 chr1 164204756 164204789 -32990643 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1837 239 332 105 40 chr1 164205292 164205568 -32989864 + L2a LINE L2 3077 3370 -56 2 1837 213 65 0 0 chr1 164206429 164206460 -32988972 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1837 226 294 0 0 chr1 164206756 164206807 -32988625 - ID4 SINE ID -1 82 32 2 1837 375 23 0 0 chr1 164207300 164207344 -32988088 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1837 29 60 0 0 chr1 164207567 164207617 -32987815 + AT_rich Low_complexity Low_complexity 1 50 0 2 1837 279 0 0 0 chr1 164208473 164208504 -32986928 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2 1837 752 199 14 0 chr1 164208525 164208666 -32986766 - RSINE1 SINE B4 -21 144 2 2 1837 933 113 12 6 chr1 164209105 164209265 -32986167 + (GA)n Simple_repeat Simple_repeat 1 161 0 2 1837 286 269 10 79 chr1 164210257 164210358 -32985074 - Charlie5 DNA MER1_type -2528 96 3 2 1837 609 144 0 0 chr1 164210783 164210887 -32984545 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 1837 452 304 118 14 chr1 164210941 164211161 -32984271 + Lx9 LINE L1 7198 7440 -204 2 1837 22 0 0 0 chr1 164211303 164211325 -32984107 + AT_rich Low_complexity Low_complexity 1 22 0 2 1837 1539 150 12 64 chr1 164211432 164211760 -32983672 - Lx9 LINE L1 -2 7642 7332 2 1837 21 0 0 0 chr1 164213231 164213252 -32982180 + AT_rich Low_complexity Low_complexity 1 21 0 2 1837 775 290 50 27 chr1 164213626 164213885 -32981547 + B4A SINE B4 3 267 -25 2 1837 225 191 15 45 chr1 164213926 164213992 -32981440 + (CATA)n Simple_repeat Simple_repeat 1 64 0 2 1837 273 333 0 30 chr1 164214043 164214142 -32981290 + GA-rich Low_complexity Low_complexity 1 96 0 2 1837 715 86 26 0 chr1 164214144 164214260 -32981172 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 2 1837 201 94 0 0 chr1 164214399 164214431 -32981001 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1837 535 207 7 7 chr1 164214787 164214933 -32980499 + (TAGG)n Simple_repeat Simple_repeat 2 147 0 2 1837 628 279 0 0 chr1 164214954 164215101 -32980331 + ID_B1 SINE B4 78 224 0 2 1837 423 198 67 38 chr1 164215636 164215741 -32979691 - PB1D7 SINE Alu -8 112 5 2 1837 2104 191 71 5 chr1 164216585 164217007 -32978425 - Lx5 LINE L1 0 7050 6601 2 1837 21 0 0 0 chr1 164217636 164217657 -32977775 + AT_rich Low_complexity Low_complexity 1 21 0 2 1837 395 244 0 0 chr1 164217756 164217838 -32977594 - ID_B1 SINE B4 -20 204 123 2 1837 252 314 77 19 chr1 164217760 164217864 -32977568 - B1F2 SINE Alu -27 122 13 2 1837 261 105 0 0 chr1 164218484 164218522 -32976910 + U2 snRNA snRNA 4 41 -147 2 1837 311 278 8 50 chr1 164219697 164219818 -32975614 + B3A SINE B2 5 120 -78 2 1837 232 354 47 47 chr1 164219818 164219869 -32975563 + B4 SINE B4 5 176 -116 2 1837 960 144 6 6 chr1 164219882 164220043 -32975389 - URR1A DNA MER1_type -65 161 1 2 1837 217 324 0 0 chr1 164220167 164220235 -32975197 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 2 1837 413 295 128 81 chr1 164220423 164220758 -32974674 + ORR1E LTR MaLR 3 353 -6 2 1837 383 274 38 30 chr1 164220765 164220897 -32974535 + ORR1E-int LTR MaLR 3 135 -1445 2 1837 968 298 96 61 chr1 164220908 164221473 -32973959 + ORR1E-int LTR MaLR 272 856 -724 2 1837 542 264 26 6 chr1 164221473 164221629 -32973803 + ORR1E LTR MaLR 1 159 -200 2 1837 1324 172 14 0 chr1 164221867 164222088 -32973344 - URR1B DNA MER1_type -1 224 1 2 1837 227 282 28 14 chr1 164222331 164222403 -32973029 + ORR1E LTR MaLR 286 358 -1 2 1837 243 306 93 12 chr1 164222410 164222496 -32972936 - MIR SINE MIR -50 212 120 2 1837 216 0 0 0 chr1 164222502 164222526 -32972906 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1837 492 192 0 0 chr1 164222526 164222625 -32972807 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1837 393 343 167 28 chr1 164222639 164222783 -32972649 + RSINE1 SINE B4 2 165 0 2 1837 189 171 0 0 chr1 164222787 164222822 -32972610 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1837 979 252 35 126 chr1 164223722 164224126 -32971306 + MTE2a LTR MaLR 13 379 0 2 1837 672 220 0 0 chr1 164224126 164224237 -32971195 - ID_B1 SINE B4 -18 206 96 2 1837 373 283 118 50 chr1 164225341 164225460 -32969972 - PB1D7 SINE Alu 0 127 1 2 1837 2107 219 2 14 chr1 164225986 164226402 -32969030 + MTD LTR MaLR 1 411 -8 2 1837 369 133 0 0 chr1 164226862 164226937 -32968495 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 1837 306 0 0 0 chr1 164226937 164226971 -32968461 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1837 487 319 14 14 chr1 164227575 164227721 -32967711 + B4A SINE B4 24 169 -123 2 1837 180 97 0 0 chr1 164227808 164227839 -32967593 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 2 1837 204 40 0 0 chr1 164227852 164227877 -32967555 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2 1837 1123 57 50 7 chr1 164227877 164227888 -32967544 - B1_Mus2 SINE Alu 0 147 137 2 1837 256 24 49 0 chr1 164227888 164227929 -32967503 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1837 1123 57 50 7 chr1 164227929 164228058 -32967374 - B1_Mus2 SINE Alu -11 136 1 2 1837 210 241 37 0 chr1 164228314 164228368 -32967064 + (TATG)n Simple_repeat Simple_repeat 3 58 0 2 1837 203 179 0 0 chr1 164228472 164228511 -32966921 + A-rich Low_complexity Low_complexity 1 39 0 2 1837 227 323 126 23 chr1 164231203 164231512 -32963920 - L2a LINE L2 -226 3200 2860 2 1837 383 339 16 0 chr1 164232182 164232306 -32963126 + MER94 DNA AcHobo 8 133 -1 2 1837 21 36 0 0 chr1 164232378 164232406 -32963026 + AT_rich Low_complexity Low_complexity 1 28 0 2 1838 441 336 72 48 chr1 164233316 164233607 -32961825 + ORR1E LTR MaLR 6 303 -56 2 1838 236 271 0 50 chr1 164234648 164234749 -32960683 + G-rich Low_complexity Low_complexity 5 100 0 2 1838 1063 239 80 65 chr1 164235377 164235776 -32959656 - Tigger13a DNA MER2_type -79 692 288 2 1838 560 291 8 0 chr1 164236530 164236664 -32958768 + B1_Mur1 SINE Alu 10 144 -5 2 1838 827 112 8 0 chr1 164236668 164236802 -32958630 + (GGGA)n Simple_repeat Simple_repeat 4 138 0 2 1838 415 202 0 102 chr1 164236861 164236949 -32958483 - B3A SINE B2 -118 80 2 2 1838 870 293 3 43 chr1 164238296 164238578 -32956854 + B4 SINE B4 4 274 -18 2 1838 488 274 17 11 chr1 164238650 164238827 -32956605 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1838 651 319 98 14 chr1 164239147 164239433 -32955999 + MER2 DNA MER2_type 35 344 -1 2 1838 607 325 42 36 chr1 164240173 164240534 -32954898 + MLT1A0 LTR MaLR 3 365 0 2 1838 894 148 0 0 chr1 164240810 164241048 -32954384 + (CA)n Simple_repeat Simple_repeat 1 238 0 2 1838 396 0 0 0 chr1 164241797 164241841 -32953591 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1838 484 274 29 29 chr1 164242891 164243030 -32952402 + Arthur1A DNA Tip100 39 177 0 2 1838 206 274 14 0 chr1 164244206 164244279 -32951153 + (CCCA)n Simple_repeat Simple_repeat 4 77 0 2 1838 1084 235 28 73 chr1 164246655 164246972 -32948460 + RLTR18 LTR ERVK 12 314 -302 2 1838 426 232 0 0 chr1 164247086 164247198 -32948234 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1838 755 254 117 5 chr1 164247206 164247412 -32948020 + RLTR18 LTR ERVK 272 500 -12 2 1838 1264 262 23 4 chr1 164247533 164247793 -32947639 + B4A SINE B4 5 269 -23 3 1838 402 21 0 0 chr1 164247794 164247841 -32947591 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1838 234 0 0 0 chr1 164247841 164247866 -32947566 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1838 531 45 0 0 chr1 164247884 164247950 -32947482 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1838 261 313 30 10 chr1 164249263 164249363 -32946069 + MTEa LTR MaLR 278 379 0 3 1838 807 290 71 39 chr1 164252434 164252714 -32942718 - B4 SINE B4 -3 289 1 3 1838 671 294 98 42 chr1 164253246 164253767 -32941665 + HAL1 LINE L1 1212 1761 -746 3 1838 675 310 29 60 chr1 164253769 164254090 -32941342 - Lx9 LINE L1 -1090 6554 6098 3 1838 353 316 25 19 chr1 164254131 164254289 -32941143 + HAL1 LINE L1 2210 2368 -139 3 1838 210 275 50 0 chr1 164254360 164254440 -32940992 + (TATG)n Simple_repeat Simple_repeat 4 87 0 3 1838 9102 98 36 8 chr1 164255147 164256806 -32938626 + Lx3A LINE L1 5272 6981 0 3 1838 334 390 72 17 chr1 164257285 164257520 -32937912 + L1MCa LINE L1 12 259 -6249 3 1838 450 0 0 0 chr1 164257721 164257771 -32937661 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1838 315 360 99 20 chr1 164258775 164258976 -32936456 + MLT1J2 LTR MaLR 105 321 -127 3 1838 649 307 17 73 chr1 164259581 164259869 -32935563 - B4A SINE B4 -18 274 3 3 1838 233 367 72 23 chr1 164259933 164260198 -32935234 + L1MCa LINE L1 138 415 -5987 3 1838 255 288 16 25 chr1 164260442 164260563 -32934869 + L1MCa LINE L1 701 820 -5582 3 1838 879 259 12 7 chr1 164260563 164260786 -32934646 + B3A SINE B2 2 203 -13 3 1838 327 333 176 28 chr1 164260979 164261121 -32934311 - RSINE1 SINE B4 0 165 3 3 1838 391 335 104 21 chr1 164261124 164261316 -32934116 + Tigger5 DNA MER2_type 35 242 -2164 3 1838 244 325 52 9 chr1 164261312 164261427 -32934005 + Tigger5 DNA MER2_type 2286 2405 -1 3 1838 486 274 112 11 chr1 164261427 164261704 -32933728 + L1MCa LINE L1 3100 3404 -2917 3 1838 261 242 261 39 chr1 164261837 164262121 -32933311 + L1ME1 LINE L1 4211 4557 -1583 3 1838 310 315 83 24 chr1 164262131 164262300 -32933132 + MER3 DNA MER1_type 3 181 -28 3 1838 1683 194 72 56 chr1 164262424 164262801 -32932631 + ORR1B1 LTR MaLR 8 390 -4 3 1838 252 200 0 0 chr1 164262801 164262856 -32932576 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1838 342 0 0 0 chr1 164262865 164262903 -32932529 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1838 252 232 79 20 chr1 164263128 164263229 -32932203 + L1ME1 LINE L1 4953 5059 -1081 3 1838 315 309 94 40 chr1 164263257 164263459 -32931973 + L1ME1 LINE L1 5120 5332 -814 3 1838 414 351 75 33 chr1 164263807 164264231 -32931201 + L1ME1 LINE L1 5628 6069 -110 3 1838 570 131 0 0 chr1 164264319 164264441 -32930991 + (GA)n Simple_repeat Simple_repeat 1 122 0 3 1838 363 330 86 6 chr1 164264562 164264736 -32930696 + MLT1J-int LTR MaLR 735 922 -465 3 1838 621 0 0 0 chr1 164264759 164264828 -32930604 + (TTTTG)n Simple_repeat Simple_repeat 4 72 0 3 1838 320 286 0 35 chr1 164264844 164264931 -32930501 - MIR SINE MIR -165 97 14 3 1838 552 68 0 0 chr1 164265089 164265162 -32930270 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1838 273 235 14 29 chr1 164265760 164265790 -32929642 + polypurine Low_complexity Low_complexity 4 32 0 3 1838 1398 50 0 0 chr1 164265790 164265969 -32929463 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 3 1838 273 235 14 29 chr1 164265969 164266008 -32929424 + polypurine Low_complexity Low_complexity 33 72 0 3 1838 697 22 22 0 chr1 164266249 164266340 -32929092 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1838 250 260 51 64 chr1 164266340 164266418 -32929014 - ID4_ SINE ID -5 78 2 3 1838 372 94 0 0 chr1 164266428 164266481 -32928951 + (TTTTC)n Simple_repeat Simple_repeat 1 53 0 3 1838 357 270 75 62 chr1 164266481 164266627 -32928805 - B1F1 SINE Alu -1 148 1 3 1838 180 158 0 0 chr1 164267103 164267141 -32928291 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1838 1013 240 131 21 chr1 164267270 164267598 -32927834 - MTD LTR MaLR -14 405 42 3 1838 251 388 12 12 chr1 164268094 164268175 -32927257 - RSINE1 SINE B4 -3 162 82 3 1838 37294 60 1 24 chr1 164268617 164274496 -32920936 + L1Md_T LINE L1 99 5586 -297 3 1838 8555 56 0 0 chr1 164274496 164275516 -32919916 + L1Md_T LINE L1 5587 6582 0 3 1838 1425 178 135 6 chr1 164275780 164275914 -32919518 - Lx9 LINE L1 0 7644 7478 3 1838 365 39 20 0 chr1 164275914 164275965 -32919467 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1838 1425 178 135 6 chr1 164275965 164276170 -32919262 - Lx9 LINE L1 -167 7477 7261 3 1838 923 92 138 0 chr1 164278016 164278146 -32917286 - B1_Mus1 SINE Alu 0 148 1 3 1838 401 307 78 35 chr1 164278358 164278500 -32916932 - MLT1C LTR MaLR -8 459 312 3 1838 2043 211 62 28 chr1 164278493 164278995 -32916437 + RLTR11A2 LTR ERVK 9 527 0 3 1838 261 213 32 16 chr1 164279587 164279649 -32915783 - 7SK RNA RNA -264 67 5 3 1838 1229 347 69 27 chr1 164279711 164280563 -32914869 + L1M4 LINE L1 5 892 -5650 3 1838 1711 140 20 14 chr1 164280772 164281068 -32914364 + MT2B LTR ERVL 304 601 0 3 1838 832 255 153 14 chr1 164281111 164281536 -32913896 + L1M4 LINE L1 2702 3185 -3459 3 1838 427 328 132 49 chr1 164282518 164283025 -32912407 + HAL1 LINE L1 801 1349 -1158 3 1838 267 31 0 0 chr1 164283047 164283079 -32912353 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1838 1304 54 0 0 chr1 164284612 164284759 -32910673 + B1_Mm SINE Alu 1 147 0 3 1838 270 105 66 0 chr1 164284762 164284838 -32910594 + A-rich Low_complexity Low_complexity 4 84 0 3 1838 2260 125 85 51 chr1 164284933 164285322 -32910110 + RLTR9D LTR ERVK 1 402 -1 3 1838 187 85 48 48 chr1 164286228 164286290 -32909142 + T-rich Low_complexity Low_complexity 2 63 0 3 1838 478 277 99 8 chr1 164286299 164286430 -32909002 - B1F1 SINE Alu -6 143 1 3 1838 222 262 11 87 chr1 164286356 164286448 -32908984 - B4 SINE B4 -139 153 69 3 1838 23 0 0 0 chr1 164287677 164287700 -32907732 + AT_rich Low_complexity Low_complexity 1 23 0 3 1838 232 281 9 86 chr1 164287714 164287819 -32907613 + ID4_ SINE ID 11 107 -45 3 1838 607 256 148 0 chr1 164287957 164288160 -32907272 + Lx8 LINE L1 6887 7119 -354 3 1838 258 222 98 12 chr1 164288825 164288907 -32906525 - L2a LINE L2 -282 3144 3056 3 1838 283 336 109 28 chr1 164288937 164289405 -32906027 - L2a LINE L2 -455 2964 2459 3 1838 252 0 0 0 chr1 164289456 164289484 -32905948 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1838 208 274 12 99 chr1 164289563 164289644 -32905788 + MER91B DNA Tip100 105 178 -12 3 1838 194 236 17 68 chr1 164289652 164289711 -32905721 - L2a LINE L2 -1034 2385 2330 3 1838 292 351 89 43 chr1 164289828 164290155 -32905277 - L2a LINE L2 -1408 2011 1670 3 1838 339 271 188 0 chr1 164290306 164290402 -32905030 + RSINE1 SINE B4 2 115 -50 3 1838 279 0 0 0 chr1 164290403 164290434 -32904998 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1838 291 54 0 0 chr1 164290434 164290470 -32904962 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1838 198 71 0 0 chr1 164290486 164290514 -32904918 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1838 997 217 59 5 chr1 164290610 164290814 -32904618 + B3 SINE B2 2 216 0 3 1838 4246 200 70 45 chr1 164292837 164293857 -32901575 + Lx5 LINE L1 6006 7050 0 3 1838 318 215 0 0 chr1 164295306 164295385 -32900047 + (CATG)n Simple_repeat Simple_repeat 3 81 0 3 1838 354 48 0 0 chr1 164295390 164295432 -32900000 + HAL1-3A_ME LINE L1 1976 2017 -841 3 1838 324 322 169 23 chr1 164295494 164295837 -32899595 + L2a LINE L2 3034 3426 0 3 1838 235 317 0 0 chr1 164296210 164296270 -32899162 - B3A SINE B2 -136 62 3 3 1838 327 202 0 0 chr1 164296990 164297069 -32898363 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1838 725 298 69 28 chr1 164297206 164297568 -32897864 - L1M4 LINE L1 -1156 4984 4609 3 1838 631 303 32 28 chr1 164297728 164297945 -32897487 + ID_B1 SINE B4 5 222 -2 3 1838 7963 64 3 0 chr1 164298715 164299764 -32895668 - L1_Mus1 LINE L1 -6 6561 5510 3 1838 655 181 120 0 chr1 164299792 164299925 -32895507 + B1_Mur4 SINE Alu 2 150 0 3 1838 180 0 0 0 chr1 164299933 164299953 -32895479 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 3 1838 180 0 0 103 chr1 164300336 164300375 -32895057 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 3 1838 368 265 99 11 chr1 164301553 164301666 -32893766 + PB1D10 SINE Alu 1 127 -20 3 1838 22 35 0 0 chr1 164301692 164301721 -32893711 + AT_rich Low_complexity Low_complexity 1 29 0 3 1838 636 267 14 7 chr1 164302573 164302720 -32892712 - B1F SINE Alu -1 148 1 3 1838 221 324 28 0 chr1 164303402 164303473 -32891959 + MIR SINE MIR 88 160 -102 3 1838 1228 251 89 9 chr1 164303503 164303695 -32891737 - MTE2b LTR MaLR 0 379 174 3 1838 531 0 0 0 chr1 164303695 164303754 -32891678 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1838 1228 251 89 9 chr1 164303754 164303887 -32891545 - MTE2b LTR MaLR -206 173 29 3 1838 658 227 55 0 chr1 164303889 164304052 -32891380 - MTE2b-int LTR MaLR 0 1580 1409 3 1838 709 284 172 21 chr1 164304054 164304338 -32891094 - MTE2b-int LTR MaLR -417 1163 837 3 1838 560 312 0 16 chr1 164304408 164304578 -32890854 - MTE2b-int LTR MaLR -888 692 542 3 1838 1285 272 47 14 chr1 164304584 164304946 -32890486 - MTE2b-int LTR MaLR -1193 387 14 3 1838 1335 276 36 11 chr1 164304958 164305321 -32890111 - MTE2b LTR MaLR 0 379 8 3 1838 231 382 31 50 chr1 164305667 164305827 -32889605 + MIR SINE MIR 84 240 -22 3 1838 931 165 227 0 chr1 164305830 164306006 -32889426 + B3 SINE B2 1 216 0 3 1838 1239 207 132 21 chr1 164306503 164306829 -32888603 - ORR1C2 LTR MaLR -22 362 1 3 1838 422 288 58 0 chr1 164307879 164308018 -32887414 + MER21B LTR ERV1 605 751 -112 3 1838 275 268 0 0 chr1 164308562 164308633 -32886799 - L1MC1 LINE L1 -20 6313 6243 3 1838 258 285 52 81 chr1 164309478 164309663 -32885769 - MLT1E2 LTR MaLR -137 490 334 3 1838 2033 181 67 34 chr1 164309730 164310148 -32885284 - Lx2B LINE L1 -13 6987 6556 3 1838 579 161 11 0 chr1 164310154 164310247 -32885185 + Lx4A LINE L1 6747 6840 -218 3 1838 315 304 71 113 chr1 164311145 164311427 -32884005 - L1ME3B LINE L1 -172 6068 5799 3 1838 2450 108 3 58 chr1 164312321 164312666 -32882766 + ORR1A3 LTR MaLR 1 326 0 3 1838 21 0 0 0 chr1 164313702 164313723 -32881709 + AT_rich Low_complexity Low_complexity 1 21 0 3 1838 258 322 96 0 chr1 164314040 164314217 -32881215 - L1_Rod LINE L1 -6481 691 498 3 1838 445 249 59 18 chr1 164314367 164314529 -32880903 + Lx8 LINE L1 5679 5849 -1624 3 1838 1160 72 0 11 chr1 164314529 164314711 -32880721 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1838 427 311 44 48 chr1 164314711 164314798 -32880634 + Lx8 LINE L1 5850 5927 -1546 3 1838 1066 274 45 24 chr1 164315000 164315336 -32880096 + ORR1E LTR MaLR 12 354 -5 3 1838 345 310 0 116 chr1 164315341 164315487 -32879945 - RSINE1 SINE B4 -35 130 2 4 1838 682 276 63 21 chr1 164315509 164315794 -32879638 - L1MA5 LINE L1 -6 6294 5998 4 1838 865 251 17 72 chr1 164316631 164316867 -32878565 + ID_B1 SINE B4 2 224 0 4 1838 1322 170 37 0 chr1 164316915 164317133 -32878299 + URR1A DNA MER1_type 1 226 0 4 1838 234 0 0 0 chr1 164317348 164317374 -32878058 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1838 354 154 36 0 chr1 164317849 164317959 -32877473 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 4 1838 1297 27 0 20 chr1 164318002 164318152 -32877280 + B1_Mm SINE Alu 1 147 0 4 1838 342 61 45 0 chr1 164318152 164318218 -32877214 + (CAAAA)n Simple_repeat Simple_repeat 1 69 0 4 1838 324 70 0 0 chr1 164318221 164318264 -32877168 + (GGGAA)n Simple_repeat Simple_repeat 3 45 0 4 1838 1326 78 0 0 chr1 164318264 164318444 -32876988 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1838 348 279 89 56 chr1 164318589 164318802 -32876630 - L1ME1 LINE L1 -13 6166 5947 4 1838 257 75 0 24 chr1 164319280 164319321 -32876111 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1838 318 258 88 31 chr1 164319391 164319551 -32875881 + RLTR21 LTR ERVK 1085 1253 -319 4 1838 288 191 0 0 chr1 164320737 164320821 -32874611 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1838 575 191 6 0 chr1 164320878 164321040 -32874392 + GA-rich Low_complexity Low_complexity 4 166 0 4 1838 915 228 66 0 chr1 164321158 164321399 -32874033 + Lx9 LINE L1 7256 7512 -132 4 1838 429 70 0 0 chr1 164321422 164321479 -32873953 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1838 21 0 0 0 chr1 164321580 164321601 -32873831 + AT_rich Low_complexity Low_complexity 1 21 0 4 1838 432 0 0 0 chr1 164321661 164321709 -32873723 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1838 452 157 29 29 chr1 164321731 164321902 -32873530 + (TG)n Simple_repeat Simple_repeat 1 171 0 4 1838 404 203 126 2 chr1 164321969 164322075 -32873357 - B1F SINE Alu -2 118 1 4 1838 753 110 0 0 chr1 164323077 164323195 -32872237 + (TC)n Simple_repeat Simple_repeat 1 118 0 4 1838 279 93 0 0 chr1 164323211 164323254 -32872178 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1838 189 0 0 0 chr1 164323254 164323275 -32872157 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1838 2669 186 38 33 chr1 164325078 164325523 -32869909 - RLTR11A LTR ERVK 0 528 79 4 1838 198 0 0 0 chr1 164325523 164325545 -32869887 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 4 1838 2669 186 38 33 chr1 164325545 164325621 -32869811 - RLTR11A LTR ERVK -450 78 4 4 1838 1566 188 78 0 chr1 164325624 164325985 -32869447 - MYSERV16_I-int LTR ERVK -1 2325 1937 4 1838 2010 155 197 1 chr1 164326012 164326662 -32868770 - MYSERV16_I-int LTR ERVK -499 1827 1051 4 1838 1159 116 98 25 chr1 164326662 164326866 -32868566 + RLTR11B LTR ERVK 235 453 0 4 1838 740 255 25 35 chr1 164327311 164327485 -32867947 + B3A SINE B2 1 175 -23 4 1838 531 0 0 0 chr1 164327485 164327544 -32867888 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1838 740 255 25 35 chr1 164327544 164327568 -32867864 + B3A SINE B2 176 197 -1 4 1838 414 0 0 0 chr1 164327615 164327661 -32867771 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1838 216 0 0 0 chr1 164328612 164328636 -32866796 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1838 734 230 104 22 chr1 164328882 164329064 -32866368 + B3A SINE B2 2 198 0 4 1838 262 255 57 67 chr1 164329919 164330024 -32865408 + MER5A1 DNA MER1_type 57 160 -6 4 1838 237 65 0 0 chr1 164330146 164330177 -32865255 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1838 3179 49 26 3 chr1 164330797 164331188 -32864244 + MTB LTR MaLR 1 400 0 4 1838 570 254 48 97 chr1 164331194 164331421 -32864011 - MTD LTR MaLR 0 419 204 4 1838 327 49 0 0 chr1 164331423 164331464 -32863968 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 4 1838 198 0 0 0 chr1 164331468 164331490 -32863942 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1838 1506 171 136 10 chr1 164331521 164331829 -32863603 + ORR1B1 LTR MaLR 40 386 -8 4 1838 862 173 0 15 chr1 164331830 164331965 -32863467 - B1_Mur4 SINE Alu -17 133 1 4 1838 258 314 53 79 chr1 164331965 164331979 -32863453 - MTD LTR MaLR -193 186 174 4 1838 4375 61 0 43 chr1 164331979 164332531 -32862901 - L1_Mus2 LINE L1 0 6566 6039 4 1838 388 272 19 34 chr1 164332531 164332630 -32862802 - MTD LTR MaLR -210 209 76 4 1838 253 283 18 12 chr1 164335243 164335345 -32860087 + CT-rich Low_complexity Low_complexity 1 102 0 4 1838 369 237 151 0 chr1 164335347 164335440 -32859992 - B1_Mur1 SINE Alu -10 139 33 4 1838 276 185 0 0 chr1 164335559 164335613 -32859819 + GA-rich Low_complexity Low_complexity 1 54 0 4 1838 1490 304 88 37 chr1 164335745 164336296 -32859136 - Lx8 LINE L1 -253 7220 6638 4 1838 204 40 0 0 chr1 164336296 164336321 -32859111 + (TTAG)n Simple_repeat Simple_repeat 2 26 0 4 1838 1490 304 88 37 chr1 164336321 164336363 -32859069 - Lx8 LINE L1 -836 6637 6597 4 1838 699 279 77 19 chr1 164336446 164336654 -32858778 - B4A SINE B4 -65 227 8 4 1838 276 91 0 0 chr1 164336683 164336727 -32858705 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1838 456 256 7 107 chr1 164336929 164337069 -32858363 - B3A SINE B2 -14 184 59 4 1838 324 0 0 0 chr1 164337828 164337864 -32857568 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 4 1838 1114 61 0 0 chr1 164337864 164337996 -32857436 - B1_Mus1 SINE Alu -14 134 3 4 1838 377 260 31 0 chr1 164338581 164338677 -32856755 - B1F SINE Alu -5 144 46 4 1838 535 189 17 43 chr1 164339351 164339467 -32855965 + PB1D10 SINE Alu 5 117 0 4 1838 217 154 0 25 chr1 164339699 164339739 -32855693 + GA-rich Low_complexity Low_complexity 3 41 0 4 1838 180 0 0 0 chr1 164339935 164339955 -32855477 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1838 379 91 0 0 chr1 164339979 164340034 -32855398 - B2_Mm2 SINE B2 -94 101 47 4 1838 1214 88 0 0 chr1 164340053 164340224 -32855208 - B2_Mm2 SINE B2 -23 172 2 4 1838 453 81 0 0 chr1 164344776 164344838 -32850594 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1838 1392 11 6 22 chr1 164344838 164345018 -32850414 + (GGGGA)n Simple_repeat Simple_repeat 2 178 0 4 1838 753 12 0 0 chr1 164345020 164345106 -32850326 + (GGGAA)n Simple_repeat Simple_repeat 1 86 0 4 1838 292 314 82 131 chr1 164345121 164345510 -32849922 - MTEa LTR MaLR 0 379 10 4 1838 224 203 17 17 chr1 164345558 164345618 -32849814 + T-rich Low_complexity Low_complexity 3 62 0 4 1838 648 308 46 46 chr1 164345850 164346112 -32849320 + B4A SINE B4 31 292 0 4 1838 3976 94 5 0 chr1 164347475 164348048 -32847384 + MT2B2 LTR ERVL 1 576 -8 4 1838 768 196 0 0 chr1 164348555 164348734 -32846698 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1838 582 209 17 11 chr1 164348721 164348895 -32846537 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 4 1838 216 0 0 0 chr1 164349274 164349298 -32846134 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1838 188 316 166 12 chr1 164349433 164349753 -32845679 - L2 LINE L2 -435 2984 2616 4 1838 402 218 0 0 chr1 164351377 164351487 -32843945 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1838 381 70 0 0 chr1 164351920 164351977 -32843455 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 4 1838 395 127 16 0 chr1 164351991 164352054 -32843378 + L1MA5 LINE L1 5860 5923 -377 4 1838 359 83 17 0 chr1 164354331 164354391 -32841041 + (TCC)n Simple_repeat Simple_repeat 2 62 0 4 1838 1275 209 86 56 chr1 164354545 164354905 -32840527 - MTD LTR MaLR 0 419 49 4 1838 2752 0 0 0 chr1 164355276 164355597 -32839835 + L1Md_T LINE L1 6284 6582 0 4 1838 183 232 0 0 chr1 164356759 164356815 -32838617 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1838 1911 189 56 29 chr1 164357893 164358301 -32837131 - MTD LTR MaLR 0 419 1 4 1838 827 190 40 6 chr1 164359128 164359303 -32836129 - URR1A DNA MER1_type 0 226 46 4 1838 928 333 47 40 chr1 164359411 164359917 -32835515 + L1MC3 LINE L1 6062 6571 -1214 4 1838 413 156 18 0 chr1 164359932 164360041 -32835391 + (TCTG)n Simple_repeat Simple_repeat 2 112 0 4 1838 216 0 0 0 chr1 164360069 164360093 -32835339 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1838 180 0 0 0 chr1 164360093 164360112 -32835320 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1838 779 276 101 27 chr1 164360115 164360480 -32834952 + L1MC3 LINE L1 7393 7784 -1 4 1838 336 330 18 9 chr1 164360672 164360782 -32834650 + PB1D10 SINE Alu 1 111 -6 4 1838 416 245 196 5 chr1 164360850 164361039 -32834393 - Lx9 LINE L1 -33 7611 7387 4 1838 267 299 0 0 chr1 164361055 164361132 -32834300 - Lx9 LINE L1 -312 7332 7256 4 1838 416 262 24 24 chr1 164361121 164361246 -32834186 + Lx9 LINE L1 7066 7190 -454 4 1838 493 88 0 48 chr1 164361805 164361889 -32833543 + L1Md_F2 LINE L1 6503 6582 0 4 1838 270 0 0 0 chr1 164362072 164362102 -32833330 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1838 518 236 57 0 chr1 164362318 164362458 -32832974 - MTD LTR MaLR -1 418 271 4 1838 264 260 0 49 chr1 164362504 164362585 -32832847 - MTD LTR MaLR -342 77 1 4 1838 24 32 0 0 chr1 164363313 164363344 -32832088 + AT_rich Low_complexity Low_complexity 1 31 0 4 1838 504 269 37 0 chr1 164363429 164363563 -32831869 + RSINE1 SINE B4 2 140 -25 4 1838 1083 87 0 0 chr1 164363678 164363816 -32831616 + B1_Mus1 SINE Alu 2 139 -9 4 1838 290 26 0 25 chr1 164363816 164363856 -32831576 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1838 263 310 74 20 chr1 164364127 164364275 -32831157 - L3 LINE CR1 -2372 2117 1962 4 1839 407 244 50 72 chr1 164366711 164366892 -32828540 + MLT1H2 LTR MaLR 37 213 -276 4 1839 328 215 157 48 chr1 164366968 164367134 -32828298 + MLT1H2 LTR MaLR 364 547 -2 4 1839 259 284 0 0 chr1 164367668 164367735 -32827697 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1839 264 122 0 0 chr1 164368133 164368174 -32827258 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1839 24 53 0 0 chr1 164369699 164369737 -32825695 + AT_rich Low_complexity Low_complexity 1 38 0 4 1839 17396 62 2 0 chr1 164370243 164372439 -32822993 + L1Md_F2 LINE L1 3386 5586 -297 4 1839 8588 33 0 5 chr1 164372439 164373439 -32821993 + L1Md_F2 LINE L1 5587 6581 -1 4 1839 404 19 19 0 chr1 164373630 164373683 -32821749 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1839 840 264 35 5 chr1 164373716 164373918 -32821514 + B3 SINE B2 9 216 0 4 1839 541 273 48 87 chr1 164373945 164374131 -32821301 + B3A SINE B2 36 215 -1 4 1839 327 130 0 0 chr1 164374542 164374596 -32820836 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1839 549 0 0 0 chr1 164374596 164374656 -32820776 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1839 1130 232 112 27 chr1 164374825 164375327 -32820105 + RMER4B LTR ERVK 1 580 -5 5 1839 955 235 83 28 chr1 164377416 164377670 -32817762 + B4 SINE B4 11 278 -14 5 1839 36 23 0 0 chr1 164377989 164378032 -32817400 + AT_rich Low_complexity Low_complexity 1 43 0 5 1839 845 206 98 21 chr1 164378833 164379001 -32816431 + B3 SINE B2 3 167 -49 5 1839 462 18 0 0 chr1 164379001 164379056 -32816376 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 1839 845 206 98 21 chr1 164379056 164379080 -32816352 + B3 SINE B2 168 208 -8 5 1839 370 329 69 18 chr1 164379925 164380142 -32815290 + MER20B DNA MER1_type 240 467 -316 5 1839 207 167 54 27 chr1 164380240 164380314 -32815118 + CT-rich Low_complexity Low_complexity 4 79 0 5 1839 7183 83 57 1 chr1 164380848 164381827 -32813605 + L1_Mus4 LINE L1 5593 6626 -10 5 1839 861 256 14 14 chr1 164382019 164382229 -32813203 - B3 SINE B2 -5 211 2 5 1839 798 235 9 129 chr1 164382246 164382471 -32812961 - B3 SINE B2 -2 214 17 5 1839 222 116 0 0 chr1 164384092 164384135 -32811297 + (TAAG)n Simple_repeat Simple_repeat 2 44 0 5 1839 376 299 27 0 chr1 164384287 164384434 -32810998 + Kanga1 DNA Tc2 1595 1745 0 5 1839 306 0 0 0 chr1 164384494 164384528 -32810904 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 5 1839 871 226 38 24 chr1 164384719 164384928 -32810504 + B4 SINE B4 9 220 -72 5 1839 375 23 0 0 chr1 164384976 164385020 -32810412 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1839 1168 57 0 0 chr1 164385660 164385800 -32809632 + B1_Mm SINE Alu 2 141 -6 5 1839 720 143 0 21 chr1 164385800 164385943 -32809489 + GA-rich Low_complexity Low_complexity 2 141 0 5 1839 612 0 0 0 chr1 164385945 164386013 -32809419 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 5 1839 381 22 0 0 chr1 164386403 164386449 -32808983 + (CTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1839 342 0 0 0 chr1 164386451 164386489 -32808943 + (GGTTG)n Simple_repeat Simple_repeat 2 39 0 5 1839 366 123 0 0 chr1 164387644 164387701 -32807731 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1839 360 0 0 0 chr1 164387790 164387830 -32807602 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1839 513 32 0 0 chr1 164387830 164387892 -32807540 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1839 197 196 107 0 chr1 164388848 164388904 -32806528 - L2c LINE L2 -233 3154 3093 5 1839 340 290 121 8 chr1 164389091 164389223 -32806209 + MTEa LTR MaLR 1 147 -232 5 1839 1052 68 8 0 chr1 164389284 164389417 -32806015 + B1_Mus1 SINE Alu 2 135 -13 5 1839 197 33 33 0 chr1 164389417 164389447 -32805985 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1839 461 277 14 68 chr1 164389501 164389722 -32805710 + MT2A LTR ERVL 281 489 -44 5 1839 198 174 0 0 chr1 164389763 164389809 -32805623 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1839 428 0 19 0 chr1 164390035 164390087 -32805345 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1839 243 0 0 0 chr1 164390357 164390384 -32805048 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1839 252 283 0 0 chr1 164390599 164390659 -32804773 + L2 LINE L2 2791 2850 -569 5 1839 393 22 0 0 chr1 164391072 164391118 -32804314 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1839 334 291 124 62 chr1 164391283 164391525 -32803907 - L2c LINE L2 -40 3347 3091 5 1839 207 0 0 0 chr1 164391913 164391936 -32803496 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1839 1927 107 13 3 chr1 164391976 164392272 -32803160 + MTC LTR MaLR 2 300 -121 5 1839 1883 90 67 0 chr1 164392272 164392571 -32802861 + ORR1A2 LTR MaLR 1 319 -8 5 1839 406 250 37 9 chr1 164392577 164392686 -32802746 + MTC LTR MaLR 306 417 -2 5 1839 1169 209 142 7 chr1 164392691 164393000 -32802432 + ORR1D1 LTR MaLR 24 374 0 5 1839 301 304 57 36 chr1 164393007 164393147 -32802285 - ORR1E LTR MaLR -211 148 6 5 1839 333 0 0 0 chr1 164393582 164393619 -32801813 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1839 587 312 103 60 chr1 164393998 164394204 -32801228 - MLT1A LTR MaLR -4 370 154 5 1839 972 157 126 0 chr1 164394204 164394402 -32801030 + URR1B DNA MER1_type 1 223 -2 5 1839 587 312 103 60 chr1 164394402 164394546 -32800886 - MLT1A LTR MaLR -221 153 5 5 1839 233 98 24 0 chr1 164394867 164394908 -32800524 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 5 1839 231 210 194 78 chr1 164394913 164395042 -32800390 - B1_Mm SINE Alu -1 146 3 5 1839 925 291 86 13 chr1 164395621 164395934 -32799498 - MTEa LTR MaLR -43 336 1 5 1839 775 258 199 44 chr1 164396209 164396410 -32799022 + B4A SINE B4 3 251 -41 5 1839 1162 97 44 33 chr1 164396410 164396591 -32798841 + B2_Mm2 SINE B2 2 184 -11 5 1839 775 258 199 44 chr1 164396591 164396640 -32798792 + B4A SINE B4 252 292 0 5 1839 315 295 26 9 chr1 164397101 164397214 -32798218 + MT2A LTR ERVL 10 124 -409 5 1839 1009 264 144 13 chr1 164397117 164397416 -32798016 + MTE2b LTR MaLR 29 366 -13 5 1839 423 0 0 0 chr1 164397845 164397892 -32797540 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1839 491 56 14 0 chr1 164397892 164397962 -32797470 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1839 192 111 0 0 chr1 164397962 164397998 -32797434 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1839 514 280 6 43 chr1 164398081 164398245 -32797187 + RSINE1 SINE B4 4 161 -4 5 1839 1961 163 84 74 chr1 164398882 164399299 -32796133 + MTC LTR MaLR 1 421 0 5 1839 632 185 60 30 chr1 164400484 164400618 -32794814 - B1_Mur1 SINE Alu -10 139 2 5 1839 449 115 13 0 chr1 164400813 164400891 -32794541 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 1839 286 217 21 21 chr1 164401482 164401576 -32793856 + (CATATA)n Simple_repeat Simple_repeat 4 97 0 5 1839 27 49 0 0 chr1 164402042 164402083 -32793349 + AT_rich Low_complexity Low_complexity 1 41 0 5 1839 235 242 96 52 chr1 164402526 164402661 -32792771 + MLT1A1 LTR MaLR 268 408 0 5 1839 552 268 0 0 chr1 164402843 164402970 -32792462 - B4A SINE B4 -35 257 131 5 1839 317 339 8 16 chr1 164404341 164404470 -32790962 + MIR SINE MIR 135 262 0 5 1839 283 258 53 21 chr1 164404537 164404632 -32790800 + B1F SINE Alu 11 108 -41 5 1839 231 254 91 0 chr1 164404661 164404716 -32790716 + ID4 SINE ID 2 61 -22 5 1839 246 293 0 0 chr1 164407286 164407361 -32788071 + G-rich Low_complexity Low_complexity 1 75 0 5 1839 721 304 99 0 chr1 164409040 164409313 -32786119 - MTE-int LTR MaLR -527 1053 754 5 1839 644 272 151 9 chr1 164409318 164409537 -32785895 - MTE2b LTR MaLR -104 275 26 5 1839 698 295 43 19 chr1 164409557 164409813 -32785619 + MLT1A LTR MaLR 91 352 -22 5 1839 273 318 37 0 chr1 164410681 164410788 -32784644 + MARNA DNA Mariner 230 340 -246 5 1839 378 100 0 0 chr1 164410794 164410854 -32784578 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1839 3658 203 44 47 chr1 164411884 164413716 -32781716 + L1_Mur3 LINE L1 101 1928 -3952 5 1839 4801 166 44 22 chr1 164413711 164414704 -32780728 + L1_Mur3 LINE L1 4623 5637 -243 5 1839 1696 203 10 0 chr1 164414699 164414995 -32780437 + Lx6 LINE L1 6451 6749 -711 5 1839 789 110 0 0 chr1 164415003 164415121 -32780311 + (GGGGA)n Simple_repeat Simple_repeat 5 122 0 5 1839 207 0 0 0 chr1 164415123 164415146 -32780286 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 5 1839 1565 0 0 11 chr1 164415160 164415342 -32780090 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 1839 2758 200 23 2 chr1 164415343 164415819 -32779613 + Lx6 LINE L1 6970 7455 -5 5 1839 26 30 0 0 chr1 164416337 164416370 -32779062 + AT_rich Low_complexity Low_complexity 1 33 0 5 1839 555 347 11 0 chr1 164416464 164416654 -32778778 - MER2 DNA MER2_type -1 344 153 5 1839 306 0 0 0 chr1 164416942 164416976 -32778456 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1839 720 132 9 0 chr1 164417649 164417763 -32777669 - B3A SINE B2 -83 115 1 5 1839 474 151 151 0 chr1 164417771 164417864 -32777568 - B1_Mur2 SINE Alu -1 148 42 5 1839 1085 89 0 32 chr1 164418774 164418959 -32776473 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 5 1839 237 108 0 0 chr1 164418959 164418996 -32776436 + (CCCCCT)n Simple_repeat Simple_repeat 2 38 0 5 1839 338 241 12 35 chr1 164419047 164419133 -32776299 - PB1D10 SINE Alu -14 103 20 5 1839 36141 47 0 5 chr1 164419671 164425166 -32770266 + L1Md_T LINE L1 23 5589 -297 5 1839 8689 29 0 0 chr1 164425166 164426159 -32769273 + L1Md_T LINE L1 5590 6582 -3 5 1839 24 32 0 0 chr1 164426217 164426248 -32769184 + AT_rich Low_complexity Low_complexity 1 31 0 5 1839 345 313 79 12 chr1 164426365 164426530 -32768902 - Lx7 LINE L1 -324 7372 7197 5 1839 348 43 0 0 chr1 164426577 164426623 -32768809 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 5 1839 5508 179 26 5 chr1 164426631 164427593 -32767839 - Lx6 LINE L1 -169 7291 6310 5 1839 1054 305 190 22 chr1 164427679 164428631 -32766801 + L2 LINE L2 579 1690 -1729 5 1839 342 0 0 0 chr1 164429470 164429508 -32765924 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1839 302 239 67 11 chr1 164429512 164429601 -32765831 - ID_B1 SINE B4 -4 220 127 5 1839 799 204 67 55 chr1 164429616 164429800 -32765632 + RMER10B LTR ERVL 6 195 -203 5 1839 315 0 0 0 chr1 164429800 164429835 -32765597 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1839 185 0 40 0 chr1 164429838 164429863 -32765569 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1839 799 204 67 55 chr1 164429863 164429928 -32765504 + RMER10B LTR ERVL 196 262 -136 5 1839 676 187 124 21 chr1 164429912 164430098 -32765334 + RMER10B LTR ERVL 194 398 0 5 1839 21 57 0 0 chr1 164430474 164430509 -32764923 + AT_rich Low_complexity Low_complexity 1 35 0 5 1839 471 334 124 30 chr1 164431113 164431588 -32763844 + L2 LINE L2 2560 3079 -340 5 1839 1311 253 14 101 chr1 164432079 164432263 -32763169 - MTE2a LTR MaLR 0 379 202 5 1839 270 0 0 0 chr1 164432263 164432293 -32763139 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 5 1839 1311 253 14 101 chr1 164432293 164432522 -32762910 - MTE2a LTR MaLR -178 201 2 5 1839 241 250 53 0 chr1 164432584 164432660 -32762772 + MLT1H1 LTR MaLR 464 543 -12 5 1839 1667 213 54 18 chr1 164432909 164433297 -32762135 - MTD LTR MaLR -8 411 10 5 1839 500 314 38 24 chr1 164433369 164433581 -32761851 - MLT1J1 LTR MaLR -184 260 46 5 1839 447 35 0 0 chr1 164434110 164434167 -32761265 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1839 634 290 27 1 chr1 164434168 164434348 -32761084 - B3A SINE B2 -32 184 1 6 1839 1192 262 57 27 chr1 164434374 164434703 -32760729 - MTEa LTR MaLR 0 379 43 6 1839 1323 165 4 9 chr1 164434703 164434929 -32760503 + URR1B DNA MER1_type 1 225 0 6 1839 1192 262 57 27 chr1 164434929 164434967 -32760465 - MTEa LTR MaLR -337 42 1 6 1839 576 330 73 89 chr1 164434984 164435353 -32760079 + MLT1A0 LTR MaLR 1 363 -2 6 1839 996 52 89 7 chr1 164436499 164436634 -32758798 - B1_Mm SINE Alu 0 147 2 6 1839 1198 98 104 77 chr1 164437287 164437369 -32758063 + URR1A DNA MER1_type 1 98 -128 6 1839 1557 48 16 0 chr1 164437369 164437555 -32757877 + B2_Mm2 SINE B2 2 190 -5 6 1839 1198 98 104 77 chr1 164437555 164437692 -32757740 + URR1A DNA MER1_type 99 226 0 6 1839 1087 90 18 0 chr1 164437835 164438002 -32757430 + B2_Mm2 SINE B2 26 195 0 6 1839 929 76 0 8 chr1 164438244 164438376 -32757056 + (TCC)n Simple_repeat Simple_repeat 3 133 0 6 1839 188 35 35 0 chr1 164438715 164438744 -32756688 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 6 1839 612 254 81 25 chr1 164438806 164439073 -32756359 - RMER1B Other Other -472 594 357 6 1839 191 321 0 0 chr1 164440622 164440675 -32754757 - L2b LINE L2 -19 3356 3304 6 1839 317 22 44 0 chr1 164441939 164441984 -32753448 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 6 1839 1208 48 7 0 chr1 164442122 164442267 -32753165 + B1_Mm SINE Alu 2 147 0 6 1839 180 0 0 0 chr1 164442397 164442417 -32753015 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1839 1359 191 246 0 chr1 164443258 164443652 -32751780 + Lx9 LINE L1 7010 7476 -168 6 1839 242 95 24 0 chr1 164443652 164443694 -32751738 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1839 1359 201 223 0 chr1 164443694 164443800 -32751632 + Lx9 LINE L1 7477 7630 -14 6 1839 189 147 0 0 chr1 164443867 164443901 -32751531 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1839 681 266 0 7 chr1 164444359 164444503 -32750929 - B1_Mur1 SINE Alu -6 143 1 6 1839 180 280 20 0 chr1 164444695 164444745 -32750687 - L2a LINE L2 -9 3417 3367 6 1839 277 311 65 43 chr1 164444967 164445105 -32750327 + MLT1A1 LTR MaLR 256 396 -12 6 1839 607 312 84 34 chr1 164445113 164445471 -32749961 + MLT1A1-int LTR MaLR 1 376 -1359 6 1839 439 234 134 27 chr1 164445478 164445553 -32749879 + RMER30 DNA MER1_type 10 85 -117 6 1839 228 67 0 0 chr1 164445553 164445583 -32749849 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1839 439 234 134 27 chr1 164445583 164445656 -32749776 + RMER30 DNA MER1_type 86 173 -29 6 1839 362 348 70 36 chr1 164445669 164445970 -32749462 + MLT1A1-int LTR MaLR 372 682 -1053 6 1839 5370 110 23 15 chr1 164446041 164446930 -32748502 - Lx4B LINE L1 -681 6377 5473 6 1839 3626 135 15 22 chr1 164446930 164447519 -32747913 + Lx4B LINE L1 6462 7046 -12 6 1839 390 343 73 82 chr1 164447521 164447851 -32747581 + MLT1A1-int LTR MaLR 772 1098 -637 6 1839 798 67 0 0 chr1 164448179 164448284 -32747148 + (TC)n Simple_repeat Simple_repeat 1 105 0 6 1839 241 288 0 0 chr1 164448431 164448490 -32746942 - MLT1L LTR MaLR -342 268 210 6 1839 296 337 11 0 chr1 164448747 164448842 -32746590 + Lx8 LINE L1 7177 7272 -201 6 1839 228 67 0 0 chr1 164450221 164450251 -32745181 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1839 2194 77 57 22 chr1 164450711 164451029 -32744403 - ORR1A4 LTR MaLR 0 329 1 6 1839 26 0 0 0 chr1 164451222 164451248 -32744184 + AT_rich Low_complexity Low_complexity 1 26 0 6 1839 291 114 0 0 chr1 164451250 164451294 -32744138 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 6 1839 283 40 0 0 chr1 164451830 164451880 -32743552 + L1_Mus4 LINE L1 6587 6636 0 6 1839 772 209 0 33 chr1 164452238 164452391 -32743041 + B1_Mur4 SINE Alu 3 150 0 6 1839 23 0 0 0 chr1 164452930 164452953 -32742479 + AT_rich Low_complexity Low_complexity 1 23 0 6 1839 1546 170 26 53 chr1 164453003 164453381 -32742051 - RLTR31B_Mm LTR ERVK -189 368 1 6 1839 759 272 113 29 chr1 164453530 164453909 -32741523 + L1MEc LINE L1 528 938 -5462 6 1839 2479 98 6 0 chr1 164453932 164454257 -32741175 - ORR1A2 LTR MaLR 0 327 1 6 1839 1369 194 44 26 chr1 164454306 164454343 -32741089 - RMER15 LTR ERVL 0 575 534 6 1839 456 51 0 0 chr1 164454343 164454402 -32741030 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1839 1369 194 44 26 chr1 164454402 164454703 -32740729 - RMER15 LTR ERVL -42 533 232 6 1839 1902 136 81 9 chr1 164454703 164455037 -32740395 - MTC LTR MaLR 0 421 64 6 1839 8066 18 0 1 chr1 164455037 164455965 -32739467 - L1_Mm LINE L1 -1132 4751 3825 6 1839 399 164 0 0 chr1 164455965 164456032 -32739400 - MTC LTR MaLR -354 67 1 6 1839 865 175 41 10 chr1 164456036 164456232 -32739200 - RMER15 LTR ERVL -373 202 1 6 1839 554 276 12 31 chr1 164456311 164456472 -32738960 + B3A SINE B2 15 172 -26 6 1839 374 237 120 38 chr1 164456550 164456817 -32738615 + L1MEc LINE L1 1067 1355 -5045 6 1839 596 301 37 17 chr1 164457339 164457647 -32737785 + L1ME1 LINE L1 5547 5863 -301 6 1839 569 212 206 29 chr1 164457673 164457877 -32737555 + L1M2 LINE L1 3381 3620 -2523 6 1839 436 298 14 28 chr1 164457941 164458086 -32737346 + ID_B1 SINE B4 80 222 -2 6 1839 282 236 43 53 chr1 164458120 164458214 -32737218 + L1M2 LINE L1 3691 3783 -2360 6 1839 570 289 120 49 chr1 164458300 164458566 -32736866 + MT2A LTR ERVL 247 531 -2 6 1839 316 277 42 0 chr1 164458580 164458699 -32736733 + L1M2 LINE L1 4697 4820 -1323 6 1839 1189 219 122 79 chr1 164458726 164458984 -32736448 + RMER4B LTR ERVK 17 279 -306 6 1839 797 105 0 39 chr1 164458984 164459162 -32736270 + (CTG)n Simple_repeat Simple_repeat 1 171 0 6 1839 1189 219 122 79 chr1 164459162 164459289 -32736143 + RMER4B LTR ERVK 280 424 -161 6 1839 952 156 39 11 chr1 164459289 164459471 -32735961 + B2_Mm2 SINE B2 4 190 -5 6 1839 1189 179 64 29 chr1 164459471 164459597 -32735835 + RMER4B LTR ERVK 425 585 0 6 1839 225 0 0 0 chr1 164460296 164460321 -32735111 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1839 2458 146 7 17 chr1 164460671 164461082 -32734350 - MTB_Mm LTR MaLR 0 407 1 6 1839 3631 139 92 19 chr1 164461082 164461828 -32733604 - MTB_Mm-int LTR MaLR 0 1258 458 6 1839 989 140 83 17 chr1 164461867 164462048 -32733384 - B2_Mm2 SINE B2 -2 193 1 6 1839 753 137 58 13 chr1 164462049 164462204 -32733228 - MTB_Mm-int LTR MaLR -1094 164 3 6 1839 2417 113 68 5 chr1 164462204 164462585 -32732847 - MTB_Mm LTR MaLR 0 407 3 6 1839 249 298 6 181 chr1 164462757 164462917 -32732515 + MLT1D LTR MaLR 296 427 -78 6 1839 429 335 32 16 chr1 164463114 164463299 -32732133 + Lx8 LINE L1 7157 7344 -129 6 1839 552 200 34 25 chr1 164463459 164463577 -32731855 - PB1D9 SINE Alu 0 120 2 6 1839 284 259 106 138 chr1 164463765 164464105 -32731327 - ORR1E LTR MaLR -11 348 20 6 1839 716 154 16 8 chr1 164464110 164464234 -32731198 - B1_Mur4 SINE Alu -25 125 1 6 1839 273 262 156 44 chr1 164465427 164465607 -32729825 + L1ME2z LINE L1 5764 5963 -481 6 1839 234 211 19 0 chr1 164465863 164465915 -32729517 - B3A SINE B2 -144 54 2 6 1839 268 143 17 35 chr1 164466807 164466865 -32728567 - MER20 DNA MER1_type -132 87 31 6 1839 542 189 38 95 chr1 164468111 164468269 -32727163 + B1_Mur4 SINE Alu 1 149 -1 6 1839 763 206 0 11 chr1 164468289 164468471 -32726961 + GA-rich Low_complexity Low_complexity 1 180 0 6 1839 200 217 0 0 chr1 164468708 164468754 -32726678 + A-rich Low_complexity Low_complexity 1 46 0 6 1839 304 252 97 18 chr1 164469268 164469381 -32726051 + MER63B DNA AcHobo 315 436 0 6 1839 2219 170 76 67 chr1 164469732 164470035 -32725397 - L1_Mur2 LINE L1 -2672 3211 2920 6 1839 217 133 67 0 chr1 164470035 164470080 -32725352 + B1_Mur1 SINE Alu 97 144 -5 6 1839 2219 170 76 67 chr1 164470080 164470541 -32724891 - L1_Mur2 LINE L1 -2672 2919 2474 6 1839 869 164 7 7 chr1 164470545 164470692 -32724740 + B1_Mus1 SINE Alu 2 148 0 6 1839 213 65 0 0 chr1 164470692 164470723 -32724709 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 6 1839 317 233 28 9 chr1 164471075 164471177 -32724255 - B1_Mur1 SINE Alu -5 144 11 6 1839 220 213 0 62 chr1 164471226 164471291 -32724141 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 6 1839 224 189 0 0 chr1 164471235 164471272 -32724160 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 6 1839 654 261 31 6 chr1 164471379 164471541 -32723891 + B3A SINE B2 17 182 -16 6 1839 360 195 90 0 chr1 164471711 164471813 -32723619 + B1F SINE Alu 1 115 -5 6 1839 530 229 216 34 chr1 164473478 164473654 -32721778 + B3 SINE B2 1 208 -8 6 1839 21 71 0 0 chr1 164473662 164473704 -32721728 + AT_rich Low_complexity Low_complexity 1 42 0 6 1839 239 54 0 26 chr1 164473775 164473813 -32721619 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1839 920 156 207 0 chr1 164473952 164474131 -32721301 - B3 SINE B2 0 216 1 6 1839 210 191 0 0 chr1 164474755 164474802 -32720630 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1839 272 300 64 7 chr1 164474860 164475001 -32720431 - MIR SINE MIR -50 212 64 6 1839 379 178 75 43 chr1 164476940 164477034 -32718398 - RMER30 DNA MER1_type -105 97 1 6 1839 496 238 132 121 chr1 164477129 164477311 -32718121 + B3A SINE B2 8 191 -7 6 1839 264 360 18 9 chr1 164477618 164477730 -32717702 + MIRb SINE MIR 2 114 -154 6 1839 679 214 101 10 chr1 164479228 164479436 -32715996 - RMER5 LTR ERV1 -3 531 305 6 1839 337 248 44 35 chr1 164479542 164479655 -32715777 - RMER5 LTR ERV1 -420 114 1 6 1839 340 250 115 0 chr1 164479769 164479873 -32715559 - Lx7 LINE L1 -19 7677 7562 6 1839 871 112 34 27 chr1 164479899 164480046 -32715386 + B1_Mur3 SINE Alu 2 149 0 6 1839 201 154 0 0 chr1 164480046 164480085 -32715347 + A-rich Low_complexity Low_complexity 1 39 0 6 1839 855 123 43 15 chr1 164480120 164480279 -32715153 - B2_Mm2 SINE B2 -19 197 2 6 1839 1482 59 0 11 chr1 164480357 164480546 -32714886 + B2_Mm2 SINE B2 2 188 -7 6 1839 2242 207 65 39 chr1 164480569 164481053 -32714379 - Lx7 LINE L1 -284 7412 6913 6 1839 2205 158 23 20 chr1 164481053 164481446 -32713986 - ORR1B1 LTR MaLR 0 394 1 6 1839 2242 207 65 39 chr1 164481446 164481495 -32713937 - Lx7 LINE L1 -784 6912 6865 6 1839 2384 102 9 0 chr1 164481504 164481828 -32713604 - ORR1A2 LTR MaLR 0 327 1 6 1839 1092 109 18 0 chr1 164481862 164482027 -32713405 - B2_Mm2 SINE B2 -27 168 1 6 1839 251 260 39 0 chr1 164482039 164482116 -32713316 - MER5A DNA MER1_type -70 119 40 6 1839 264 222 0 0 chr1 164483606 164483678 -32711754 + GA-rich Low_complexity Low_complexity 5 76 0 6 1839 1346 171 14 0 chr1 164483696 164483918 -32711514 - URR1B DNA MER1_type 0 225 1 6 1839 661 299 69 58 chr1 164484460 164484884 -32710548 + MLT1D LTR MaLR 68 503 -2 6 1839 576 173 9 0 chr1 164487204 164487314 -32708118 - B1F SINE Alu -38 111 1 6 1839 659 225 276 9 chr1 164487765 164488030 -32707402 - L1MB7 LINE L1 -252 5932 5599 6 1839 2941 40 0 6 chr1 164488186 164488534 -32706898 - ORR1A0 LTR MaLR 0 346 1 6 1839 514 168 74 9 chr1 164488705 164488813 -32706619 + B1_Mur2 SINE Alu 34 148 -1 6 1839 648 273 165 19 chr1 164489083 164489453 -32705979 + L1MB2 LINE L1 4908 5331 -809 6 1839 504 226 149 37 chr1 164489650 164489811 -32705621 + L1MB2 LINE L1 5477 5655 -516 6 1839 384 296 35 79 chr1 164489862 164490056 -32705376 - B3A SINE B2 -7 209 5 7 1839 552 244 120 143 chr1 164490070 164490371 -32705061 + L1MB2 LINE L1 5675 5968 -203 6 1839 320 293 30 20 chr1 164490389 164490490 -32704942 + ID_B1 SINE B4 113 214 -10 7 1839 512 273 65 10 chr1 164490516 164490716 -32704716 + L1MB2 LINE L1 5953 6163 -8 6 1839 228 303 63 70 chr1 164490736 164490878 -32704554 + L2c LINE L2 3012 3152 -235 7 1839 341 253 11 11 chr1 164491109 164491197 -32704235 - RSINE1 SINE B4 -63 102 15 7 1839 570 215 25 167 chr1 164491303 164491465 -32703967 + MT2B LTR ERVL 1 139 -394 7 1839 2240 142 46 3 chr1 164491711 164492079 -32703353 - ORR1C2 LTR MaLR 0 384 1 7 1839 285 29 0 0 chr1 164492372 164492406 -32703026 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1839 238 250 103 10 chr1 164492421 164492518 -32702914 - PB1D10 SINE Alu -11 106 1 7 1839 254 275 70 52 chr1 164492915 164493030 -32702402 + MLT1A1 LTR MaLR 256 372 -36 7 1839 791 186 179 5 chr1 164493030 164493214 -32702218 + B3 SINE B2 1 216 0 7 1839 192 158 0 0 chr1 164493895 164493933 -32701499 + T-rich Low_complexity Low_complexity 1 38 0 7 1839 1214 48 0 0 chr1 164493933 164494079 -32701353 - B1_Mus1 SINE Alu 0 148 3 7 1839 634 192 18 55 chr1 164494258 164494423 -32701009 - ORR1D2 LTR MaLR 0 370 212 7 229 315 271 67 40 chr1 164495325 164495475 -32699957 + RMER15 LTR ERVL 422 575 0 7 1840 362 235 25 0 chr1 164495895 164495976 -32699456 - B1_Mur2 SINE Alu -56 93 11 7 1840 230 340 0 99 chr1 164495906 164496017 -32699415 - MT2B LTR ERVL -365 236 137 7 1840 673 333 53 31 chr1 164496726 164497085 -32698347 - LTR80B LTR ERVL -115 469 103 7 1840 434 284 101 14 chr1 164497255 164497473 -32697959 + HAL1 LINE L1 130 366 -2141 7 1840 508 152 10 39 chr1 164497483 164497586 -32697846 + B3 SINE B2 1 100 -116 7 1840 1821 209 28 83 chr1 164497615 164498074 -32697358 - Lx5 LINE L1 -5 7045 6612 7 1840 926 166 0 0 chr1 164498118 164498257 -32697175 + B1_Mur2 SINE Alu 2 140 -9 7 1840 1250 154 9 31 chr1 164498294 164498522 -32696910 - URR1B DNA MER1_type 0 225 3 7 1840 2107 128 47 62 chr1 164498770 164499154 -32696278 + ORR1C1 LTR MaLR 1 378 0 7 1840 927 240 9 37 chr1 164499495 164499711 -32695721 + B3 SINE B2 1 210 -6 7 1840 304 229 90 40 chr1 164502832 164502932 -32692500 - MER103 DNA DNA -27 139 35 1 1840 1259 323 48 89 chr1 164503001 164503796 -32691636 - MER21B LTR ERV1 -80 783 22 2 1840 196 200 33 0 chr1 164503831 164503891 -32691541 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 3 1840 430 289 85 49 chr1 164505044 164505346 -32690086 - L1MB8 LINE L1 -48 6130 5812 4 1840 1046 206 19 5 chr1 164505351 164505556 -32689876 - B3 SINE B2 -8 208 1 5 1840 873 299 12 4 chr1 164506607 164506852 -32688580 - B4A SINE B4 -6 286 40 6 1840 234 0 0 0 chr1 164506919 164506945 -32688487 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1840 1115 58 0 0 chr1 164506945 164507083 -32688349 - B1_Mus2 SINE Alu -9 138 1 8 1840 364 311 79 19 chr1 164507196 164507517 -32687915 - MLT1D LTR MaLR -117 388 5 9 1840 294 322 131 0 chr1 164508341 164508524 -32686908 - L1ME1 LINE L1 -290 5889 5683 1 1840 425 229 19 2 chr1 164508670 164508775 -32686657 - PB1D7 SINE Alu -15 105 1 1 1840 287 244 48 12 chr1 164508777 164508860 -32686572 + CT-rich Low_complexity Low_complexity 6 91 0 1 1840 381 309 26 31 chr1 164508919 164509113 -32686319 - L1ME1 LINE L1 -1083 5063 4871 1 1840 215 266 47 0 chr1 164509242 164509306 -32686126 + CT-rich Low_complexity Low_complexity 4 70 0 1 1840 243 303 105 0 chr1 164510009 164510085 -32685347 + AluG_3 SINE Alu 138 221 -90 1 1840 659 176 30 22 chr1 164510238 164510372 -32685060 - B1_Mur4 SINE Alu 0 150 16 1 1840 273 93 0 0 chr1 164510916 164510936 -32684496 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1840 1223 34 0 7 chr1 164510936 164511084 -32684348 - B1_Mus2 SINE Alu 0 147 1 1 1840 273 93 0 0 chr1 164511084 164511106 -32684326 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1840 1372 73 14 81 chr1 164511109 164511318 -32684114 - B2_Mm2 SINE B2 0 195 1 1 1840 784 192 0 0 chr1 164511544 164511690 -32683742 + B1_Mus1 SINE Alu 2 147 -1 2 1840 233 307 0 54 chr1 164512094 164512187 -32683245 + Cheshire DNA MER1_type 166 253 -2167 2 1840 604 290 187 15 chr1 164512192 164512535 -32682897 - LTR75 LTR ERVL -62 500 99 2 1840 285 237 139 44 chr1 164513349 164513486 -32681946 - MIRb SINE MIR -45 223 74 2 1840 22 35 0 0 chr1 164513804 164513833 -32681599 + AT_rich Low_complexity Low_complexity 1 29 0 2 1840 1172 210 0 0 chr1 164513833 164514038 -32681394 - B3 SINE B2 -8 208 4 2 1840 746 245 110 4 chr1 164514049 164514317 -32681115 - L1M2 LINE L1 -1452 4691 4417 2 1840 993 234 86 35 chr1 164514324 164514638 -32680794 + L1M2 LINE L1 4725 5054 -1089 2 1840 239 271 187 8 chr1 164514652 164514775 -32680657 + L1M2 LINE L1 5130 5274 -869 2 1840 327 259 26 7 chr1 164514804 164514916 -32680516 + L1M2 LINE L1 5335 5451 -849 2 1840 716 201 8 0 chr1 164514916 164515050 -32680382 + B1_Mus1 SINE Alu 1 135 -13 2 1840 454 299 12 31 chr1 164515112 164515274 -32680158 + L1M2 LINE L1 5448 5606 -685 2 1840 368 291 23 38 chr1 164515289 164515421 -32680011 + ID_B1 SINE B4 95 224 0 2 1840 828 137 7 30 chr1 164515618 164515753 -32679679 - B1_Mur3 SINE Alu -16 133 2 2 1840 332 301 68 0 chr1 164516292 164516395 -32679037 - ID_B1 SINE B4 -30 194 85 3 1840 485 209 34 25 chr1 164516399 164516517 -32678915 - L1M2 LINE L1 -693 5607 5489 3 1840 213 65 0 0 chr1 164516708 164516739 -32678693 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1840 234 0 0 0 chr1 164517257 164517283 -32678149 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1840 429 54 0 0 chr1 164517283 164517338 -32678094 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1840 35 71 0 0 chr1 164517452 164517522 -32677910 + AT_rich Low_complexity Low_complexity 1 70 0 3 1840 21 0 0 0 chr1 164519070 164519091 -32676341 + AT_rich Low_complexity Low_complexity 1 21 0 3 1840 235 258 154 22 chr1 164519224 164519315 -32676117 - RSINE1 SINE B4 -29 136 34 3 1840 207 0 0 0 chr1 164519445 164519468 -32675964 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1840 22 35 0 0 chr1 164521209 164521238 -32674194 + AT_rich Low_complexity Low_complexity 1 29 0 3 1840 238 214 74 63 chr1 164521612 164521707 -32673725 - B1_Mm SINE Alu -50 97 2 4 1840 349 269 109 66 chr1 164522223 164522406 -32673026 + Tigger7 DNA MER2_type 2300 2490 -1 4 1840 404 125 0 77 chr1 164522881 164522959 -32672473 - B1F SINE Alu -5 144 73 4 1840 23 0 0 0 chr1 164523236 164523259 -32672173 + AT_rich Low_complexity Low_complexity 1 23 0 4 1840 1434 282 95 25 chr1 164523602 164524162 -32671270 - MER82 DNA MER2_type -29 624 26 4 1840 216 246 0 0 chr1 164524603 164524672 -32670760 + T-rich Low_complexity Low_complexity 1 69 0 4 1840 1164 48 0 39 chr1 164526113 164526266 -32669166 + B1_Mus2 SINE Alu 1 147 0 4 1840 180 0 0 0 chr1 164526266 164526286 -32669146 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1840 588 262 0 26 chr1 164526931 164527084 -32668348 + B1F SINE Alu 1 149 0 4 1840 306 0 0 0 chr1 164528146 164528180 -32667252 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1840 216 0 0 0 chr1 164528207 164528231 -32667201 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1840 499 218 53 26 chr1 164528237 164528350 -32667082 - PB1D9 SINE Alu 0 120 5 5 1840 317 250 0 0 chr1 164528375 164528443 -32666989 - AluG_3 SINE Alu -96 215 148 5 1840 361 243 70 35 chr1 164529448 164529563 -32665869 + ID_B1 SINE B4 91 209 -15 5 1840 288 186 0 0 chr1 164529583 164529642 -32665790 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1840 807 284 85 11 chr1 164530129 164530400 -32665032 + B4A SINE B4 1 291 -1 5 1840 262 321 319 6 chr1 164530502 164530823 -32664609 + L2a LINE L2 1934 2354 -1065 5 1840 233 290 74 9 chr1 164531000 164531108 -32664324 + L2a LINE L2 3249 3363 -63 5 1840 326 246 93 60 chr1 164531152 164531303 -32664129 + L1M6 LINE L1 934 1089 -5407 5 1840 24 0 0 0 chr1 164531303 164531327 -32664105 + AT_rich Low_complexity Low_complexity 1 24 0 5 1840 399 305 82 35 chr1 164531381 164531551 -32663881 + B4 SINE B4 1 178 -114 5 1840 296 250 79 0 chr1 164532802 164532878 -32662554 - ID4_ SINE ID 0 83 2 6 1840 366 292 9 0 chr1 164532946 164533059 -32662373 - MER45B DNA Tip100 0 1040 931 6 1840 21 0 0 0 chr1 164533059 164533080 -32662352 + AT_rich Low_complexity Low_complexity 1 21 0 6 1840 541 251 101 28 chr1 164533084 164533301 -32662131 + L1M2 LINE L1 5393 5625 -687 6 1840 1073 178 54 5 chr1 164533341 164533544 -32661888 + B3 SINE B2 1 213 -3 6 1840 445 320 142 21 chr1 164533680 164533913 -32661519 + RMER15 LTR ERVL 301 561 -14 6 1840 243 61 0 0 chr1 164533938 164533971 -32661461 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1840 310 292 52 46 chr1 164534001 164534121 -32661311 + B1F1 SINE Alu 1 127 0 6 1840 980 136 34 0 chr1 164534153 164534330 -32661102 + B2_Mm2 SINE B2 9 191 -4 6 1840 1113 265 133 7 chr1 164534364 164534808 -32660624 + L1MB3 LINE L1 5679 6178 -5 6 1840 1290 27 0 0 chr1 164534846 164534993 -32660439 - B1_Mus1 SINE Alu 0 148 2 7 1840 1009 207 34 10 chr1 164535009 164535214 -32660218 - B3 SINE B2 -6 210 1 7 1840 40 0 0 0 chr1 164535265 164535305 -32660127 + AT_rich Low_complexity Low_complexity 1 40 0 7 1840 429 314 94 81 chr1 164535407 164535961 -32659471 - MER45B DNA Tip100 -394 646 86 6 1840 369 177 100 40 chr1 164536158 164536258 -32659174 + PB1D7 SINE Alu 14 119 -1 7 1840 544 267 113 7 chr1 164536374 164536525 -32658907 + B3A SINE B2 1 167 -31 7 1840 225 0 0 0 chr1 164536535 164536560 -32658872 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1840 1468 225 95 30 chr1 164536575 164537102 -32658330 - RLTR31_Mm LTR ERVK 0 561 1 7 1840 269 325 17 0 chr1 164537154 164537274 -32658158 + L1_Rod LINE L1 5711 5832 -15 7 1840 2228 116 28 0 chr1 164537365 164537685 -32657747 - ORR1A4 LTR MaLR 0 329 1 7 1840 471 197 5 0 chr1 164538747 164538842 -32656590 + B1_Mus2 SINE Alu 20 117 -3 7 1840 491 298 87 35 chr1 164538927 164538962 -32656470 - RMER15 LTR ERVL 0 575 541 8 1840 186 103 0 0 chr1 164538962 164538991 -32656441 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1840 681 13 0 0 chr1 164538991 164539068 -32656364 + (GA)n Simple_repeat Simple_repeat 2 79 0 8 1840 491 298 87 35 chr1 164539068 164539285 -32656147 - RMER15 LTR ERVL -35 540 310 8 1840 300 254 110 5 chr1 164540404 164540512 -32654920 - PB1D10 SINE Alu 0 120 1 8 1840 285 294 101 38 chr1 164540595 164540754 -32654678 + MER20 DNA MER1_type 50 218 -1 8 1840 233 227 0 83 chr1 164542571 164542643 -32652789 - B4 SINE B4 -54 238 173 8 1840 1817 237 95 33 chr1 164543168 164543683 -32651749 + Lx7 LINE L1 6801 7347 -349 8 1840 338 239 0 14 chr1 164544312 164544384 -32651048 + B3A SINE B2 1 71 -127 8 1840 534 168 126 55 chr1 164544399 164544417 -32651015 + RMER17C LTR ERVK 215 235 -175 8 1840 468 51 0 0 chr1 164544417 164544476 -32650956 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1840 534 168 126 55 chr1 164544476 164544640 -32650792 + RMER17C LTR ERVK 236 410 0 8 1840 326 130 22 0 chr1 164544641 164544687 -32650745 + RMER17C-int LTR ERVK 1 47 -3191 8 1840 263 179 27 107 chr1 164544689 164544764 -32650668 + RMER17C-int LTR ERVK 11 79 -3159 8 1840 10857 177 81 109 chr1 164544814 164546362 -32649070 + RMER17C-int LTR ERVK 224 1640 -1598 8 1840 4258 51 2 2 chr1 164546362 164546874 -32648558 - RLTR1B LTR ERV1 0 512 1 9 1840 10857 177 81 109 chr1 164546874 164547804 -32647628 + RMER17C-int LTR ERVK 1641 2624 -614 8 1840 292 178 0 0 chr1 164547804 164547849 -32647583 - LSU-rRNA_Hsa rRNA rRNA -789 4246 4202 9 1840 10857 177 81 109 chr1 164547849 164548427 -32647005 + RMER17C-int LTR ERVK 2625 3238 0 8 1840 691 267 4 31 chr1 164548427 164548712 -32646720 + RMER17C LTR ERVK 1 478 -331 8 1840 909 205 46 37 chr1 164548727 164549051 -32646381 + RMER17C LTR ERVK 84 410 0 9 1840 357 237 20 30 chr1 164549106 164549206 -32646226 + RMER5 LTR ERV1 412 510 -24 9 1840 272 350 26 0 chr1 164549421 164549538 -32645894 + MIRb SINE MIR 81 200 -68 9 1840 327 201 155 106 chr1 164550647 164550676 -32644756 - MLT1F1 LTR MaLR -9 560 518 9 1840 929 143 70 27 chr1 164550676 164550863 -32644569 + B2_Mm2 SINE B2 1 195 0 9 1840 327 209 158 99 chr1 164550863 164551013 -32644419 - MLT1F1 LTR MaLR -36 524 369 9 1840 279 0 0 0 chr1 164551474 164551505 -32643927 + (CAA)n Simple_repeat Simple_repeat 3 33 0 9 1840 4087 65 86 16 chr1 164552452 164553001 -32642431 - LTRIS_Mus LTR ERV1 0 587 1 9 1840 27 29 0 0 chr1 164553354 164553388 -32642044 + AT_rich Low_complexity Low_complexity 1 34 0 9 1840 364 342 44 0 chr1 164553609 164553723 -32641709 + ID_B1 SINE B4 85 203 -21 1 1840 350 301 71 29 chr1 164553723 164553749 -32641683 + B1F2 SINE Alu 4 149 0 1 1840 378 88 0 0 chr1 164555017 164555074 -32640358 + L1_Mus3 LINE L1 6566 6622 -16 1 1840 222 37 0 0 chr1 164555074 164555101 -32640331 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1840 248 131 0 21 chr1 164555777 164555824 -32639608 + CT-rich Low_complexity Low_complexity 4 49 0 1 1840 807 122 266 28 chr1 164555837 164556014 -32639418 + URR1A DNA MER1_type 8 226 0 1 1840 330 195 12 49 chr1 164556378 164556459 -32638973 + RMER1A Other Other 951 1028 -2 1 1840 1148 65 0 0 chr1 164556466 164556604 -32638828 + B1_Mus1 SINE Alu 1 138 -10 1 1840 221 0 35 0 chr1 164556604 164556633 -32638799 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1840 267 31 0 0 chr1 164556673 164556705 -32638727 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 1 1840 927 210 58 34 chr1 164556865 164557072 -32638360 - B3 SINE B2 -4 212 1 1 1840 312 304 36 108 chr1 164557086 164557109 -32638323 + B4 SINE B4 70 223 -69 1 1840 677 209 0 28 chr1 164557109 164557252 -32638180 + B1_Mur1 SINE Alu 9 147 -2 1 1840 882 238 0 58 chr1 164557309 164557532 -32637900 + B3 SINE B2 1 210 -6 1 1840 192 77 0 0 chr1 164557870 164557896 -32637536 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1 1840 344 306 37 0 chr1 164558230 164558338 -32637094 + PB1 SINE Alu 4 115 -12 1 1840 504 0 0 0 chr1 164559393 164559449 -32635983 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1840 7202 54 32 0 chr1 164559607 164560484 -32634948 - L1_Mus1 LINE L1 -10 6557 5653 1 1840 5946 42 3 7 chr1 164561973 164562694 -32632738 - L1Md_F2 LINE L1 0 6582 5865 1 1840 722 201 22 0 chr1 164563130 164563264 -32632168 - B1F SINE Alu -7 142 6 1 1840 465 34 0 0 chr1 164563276 164563335 -32632097 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1 1840 1667 257 138 83 chr1 164563411 164563669 -32631763 - RMER12 LTR ERVK -85 1237 973 1 1840 979 71 14 0 chr1 164563669 164563810 -32631622 + (GA)n Simple_repeat Simple_repeat 1 143 0 1 1840 1667 257 138 83 chr1 164563810 164564724 -32630708 - RMER12 LTR ERVK -350 972 1 1 1840 678 258 77 70 chr1 164564778 164565045 -32630387 + MTE2b LTR MaLR 10 264 -155 1 1840 622 253 14 0 chr1 164565045 164565191 -32630241 - B1_Mur1 SINE Alu -1 148 1 1 1840 689 272 31 2 chr1 164565191 164565355 -32630077 + MTE2b LTR MaLR 205 405 -14 1 1840 351 0 0 0 chr1 164565381 164565420 -32630012 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1840 207 342 104 9 chr1 164566302 164566417 -32629015 + MIR3 SINE MIR 10 135 -73 1 1840 793 291 39 4 chr1 164567340 164567571 -32627861 + B4A SINE B4 29 267 -25 1 1840 210 118 0 0 chr1 164567572 164567606 -32627826 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1840 361 301 25 25 chr1 164567814 164567971 -32627461 + RSINE1 SINE B4 2 158 -7 1 1840 354 74 0 0 chr1 164568139 164568193 -32627239 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1840 180 0 0 0 chr1 164568193 164568213 -32627219 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 1840 252 281 199 31 chr1 164568347 164568538 -32626894 + Charlie4a DNA MER1_type 42 264 -244 1 1840 402 21 0 0 chr1 164570387 164570434 -32624998 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1 1840 810 201 0 7 chr1 164570460 164570605 -32624827 - B1_Mus2 SINE Alu -1 146 3 1 1840 192 40 0 0 chr1 164571469 164571494 -32623938 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1 1840 211 334 70 15 chr1 164571765 164571903 -32623529 - MIR3 SINE MIR -25 183 42 1 1840 721 215 7 0 chr1 164571967 164572102 -32623330 + B1_Mur4 SINE Alu 2 137 -13 1 1840 1249 163 169 17 chr1 164572609 164572965 -32622467 - RMER17C LTR ERVK 0 410 1 1 1840 319 343 44 0 chr1 164573850 164573987 -32621445 - MIRc SINE MIR -124 144 2 1 1840 243 282 0 0 chr1 164574438 164574509 -32620923 - LTR41B LTR ERVL -8 750 680 1 1840 7024 213 79 15 chr1 164574516 164576159 -32619273 - Lx7 LINE L1 0 7696 5948 1 1840 357 291 87 7 chr1 164576770 164576919 -32618513 + MIR SINE MIR 46 206 -62 1 1840 548 143 0 10 chr1 164577737 164577836 -32617596 + CT-rich Low_complexity Low_complexity 1 98 0 1 1840 489 127 0 0 chr1 164577836 164577915 -32617517 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1840 221 322 130 16 chr1 164578349 164578472 -32616960 - MIR3 SINE MIR -71 137 1 1 1840 638 196 75 0 chr1 164580169 164580302 -32615130 - B1_Mur2 SINE Alu -5 144 2 1 1840 388 318 45 8 chr1 164580430 164580563 -32614869 - RSINE1 SINE B4 -18 147 10 1 1840 861 133 29 7 chr1 164581621 164581757 -32613675 + B1_Mus1 SINE Alu 1 139 -9 1 1840 399 56 0 0 chr1 164581758 164581812 -32613620 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1840 227 182 45 0 chr1 164581812 164581856 -32613576 - MLT1B LTR MaLR -344 46 1 1 1840 224 217 0 0 chr1 164582183 164582229 -32613203 + CT-rich Low_complexity Low_complexity 3 48 0 1 1840 397 365 69 59 chr1 164582229 164582634 -32612798 + L2a LINE L2 2924 3332 -94 1 1840 372 254 120 27 chr1 164582885 164583035 -32612397 + MER3 DNA MER1_type 40 203 -6 1 1840 456 196 136 114 chr1 164583626 164583662 -32611770 - B2_Mm2 SINE B2 -7 188 159 1 1840 351 0 0 0 chr1 164583662 164583701 -32611731 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 1 1840 638 196 136 114 chr1 164583701 164583848 -32611584 - B3A SINE B2 -37 158 1 1 1840 906 239 63 96 chr1 164584068 164584434 -32610998 + ORR1E LTR MaLR 6 359 0 1 1840 639 280 0 0 chr1 164584774 164584924 -32610508 + RSINE1 SINE B4 2 151 -14 1 1840 552 200 0 0 chr1 164584969 164585089 -32610343 + GA-rich Low_complexity Low_complexity 2 121 0 1 1840 764 112 0 0 chr1 164586119 164586235 -32609197 + B1_Mur2 SINE Alu 34 149 0 1 1840 207 0 0 0 chr1 164586235 164586258 -32609174 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1840 1476 87 0 5 chr1 164586283 164586479 -32608953 + B2_Mm2 SINE B2 1 195 0 1 1840 282 247 43 33 chr1 164586698 164586790 -32608642 + RSINE1 SINE B4 8 100 -65 1 1840 192 125 0 0 chr1 164586793 164586825 -32608607 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 1 1840 451 191 16 0 chr1 164588675 164588763 -32606669 + B1_Mur1 SINE Alu 20 111 -38 1 1840 340 288 134 6 chr1 164588784 164588941 -32606491 + MIRb SINE MIR 34 210 -58 1 1840 402 270 50 0 chr1 164589251 164589351 -32606081 - BC1_Mm scRNA scRNA -47 105 1 1 1840 627 257 32 32 chr1 164590750 164590939 -32604493 + B4A SINE B4 42 230 -62 1 1840 425 309 124 6 chr1 164590937 164591106 -32604326 + B4A SINE B4 84 272 -20 1 1840 342 0 0 0 chr1 164591109 164591147 -32604285 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1840 268 83 20 20 chr1 164591151 164591200 -32604232 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 1 1840 462 319 108 35 chr1 164591239 164591665 -32603767 - L1_Mur3 LINE L1 -4039 1808 1352 1 1840 486 75 0 0 chr1 164591985 164592052 -32603380 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1840 2640 27 3 0 chr1 164592052 164592385 -32603047 + ORR1A0 LTR MaLR 2 335 -11 1 1840 8706 53 9 2 chr1 164592391 164593610 -32601822 + ORR1A0-int LTR MaLR 1 1228 -564 1 1840 1083 123 0 0 chr1 164593611 164593774 -32601658 - B2_Mm2 SINE B2 -30 165 3 1 1840 219 36 0 0 chr1 164593788 164593816 -32601616 + (TTCC)n Simple_repeat Simple_repeat 4 31 0 1 1840 689 191 0 11 chr1 164593810 164593943 -32601489 + CT-rich Low_complexity Low_complexity 44 175 0 1 1840 1086 90 0 0 chr1 164593943 164594121 -32601311 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 1840 689 191 0 11 chr1 164594121 164594162 -32601270 + polypyrimidine Low_complexity Low_complexity 3 43 0 1 1840 684 194 22 0 chr1 164594782 164594916 -32600516 + B1_Mur3 SINE Alu 3 139 -10 1 1840 495 0 0 0 chr1 164594916 164594971 -32600461 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1840 333 129 0 0 chr1 164594971 164595041 -32600391 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1840 588 228 133 21 chr1 164595043 164595231 -32600201 + B3 SINE B2 8 216 0 1 1840 424 93 27 0 chr1 164595545 164595620 -32599812 + (AGGGGG)n Simple_repeat Simple_repeat 4 80 0 1 1840 245 98 0 24 chr1 164596286 164596328 -32599104 + (TCC)n Simple_repeat Simple_repeat 3 43 0 1 1840 313 156 94 68 chr1 164596494 164596611 -32598821 - Lx8 LINE L1 0 7473 7354 1 1840 1064 196 155 0 chr1 164596641 164596932 -32598500 + MT2A LTR ERVL 194 529 -4 1 1840 873 139 79 23 chr1 164597341 164597518 -32597914 - B2_Mm2 SINE B2 -8 187 1 1 1840 740 191 25 6 chr1 164597526 164597697 -32597735 - B2_Mm2 SINE B2 -21 172 1 1 1840 250 223 37 60 chr1 164597697 164597791 -32597641 - L1M2 LINE L1 -4587 2262 2160 1 1840 707 196 35 14 chr1 164597910 164598055 -32597377 - B1_Mur4 SINE Alu 0 150 3 1 1840 384 22 0 0 chr1 164599752 164599797 -32595635 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1 1840 860 158 42 0 chr1 164600608 164600773 -32594659 - URR1B DNA MER1_type 0 225 54 1 1840 500 154 92 17 chr1 164601466 164601585 -32593847 - B1_Mur4 SINE Alu -19 131 4 1 1840 321 150 33 0 chr1 164601585 164601617 -32593815 - PB1D9 SINE Alu -80 40 7 1 1840 367 299 0 10 chr1 164601630 164601728 -32593704 - ID_B1 SINE B4 -4 220 124 1 1840 201 94 0 0 chr1 164602144 164602176 -32593256 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1840 237 83 0 0 chr1 164602282 164602318 -32593114 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1840 21 0 0 0 chr1 164605400 164605421 -32590011 + AT_rich Low_complexity Low_complexity 1 21 0 1 1840 189 0 0 0 chr1 164605567 164605588 -32589844 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1840 624 116 0 0 chr1 164606011 164606106 -32589326 + (A)n Simple_repeat Simple_repeat 1 95 0 2 1840 1162 84 6 0 chr1 164607136 164607302 -32588130 + Lx3_Mus LINE L1 6776 6942 -67 2 1840 250 248 123 9 chr1 164607943 164608049 -32587383 - RSINE1 SINE B4 -45 120 3 2 1840 662 184 9 0 chr1 164608536 164608645 -32586787 - PB1D9 SINE Alu -9 111 2 2 1840 1213 37 55 0 chr1 164609127 164609290 -32586142 + MTA_Mm LTR MaLR 209 380 -16 2 1840 326 143 0 0 chr1 164609828 164609877 -32585555 + PB1D9 SINE Alu 1 49 -71 2 1840 338 282 82 0 chr1 164610566 164610651 -32584781 - PB1D7 SINE Alu -26 94 3 2 1840 309 297 0 0 chr1 164613282 164613346 -32582086 - B1F1 SINE Alu -81 68 5 2 1840 432 0 0 0 chr1 164614525 164614573 -32580859 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2 1840 630 132 0 0 chr1 164615550 164615641 -32579791 - B1_Mus2 SINE Alu -3 144 54 2 1840 287 194 0 75 chr1 164615592 164615659 -32579773 - MT2B LTR ERVL -344 257 196 2 1840 353 43 0 11 chr1 164615698 164615756 -32579676 - B1_Mus2 SINE Alu 0 147 64 2 1840 1373 12 129 0 chr1 164615761 164615932 -32579500 - B2_Mm1a SINE B2 0 193 1 2 1840 255 243 14 28 chr1 164617539 164617611 -32577821 + PB1D10 SINE Alu 46 116 -1 2 1840 245 271 114 0 chr1 164617611 164617681 -32577751 + ID2 SINE ID 2 79 -4 2 1840 1049 75 0 7 chr1 164617918 164618066 -32577366 - B1_Mus1 SINE Alu 0 148 2 2 1840 618 14 0 0 chr1 164618104 164618175 -32577257 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1840 1150 41 14 14 chr1 164619373 164619520 -32575912 - B1_Mus1 SINE Alu 0 148 2 2 1840 182 105 26 0 chr1 164620836 164620874 -32574558 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 2 1840 279 222 62 16 chr1 164621863 164621927 -32573505 - MER2B DNA MER2_type -269 67 1 2 1840 386 226 108 0 chr1 164621927 164622021 -32573411 - MamRep137 DNA TcMar? -172 272 168 2 1840 447 145 187 75 chr1 164622244 164622378 -32573054 + B1_Mur4 SINE Alu 2 150 0 2 1840 956 125 86 0 chr1 164624058 164624210 -32571222 + B2_Mm2 SINE B2 1 165 -30 2 1840 186 43 0 0 chr1 164624211 164624234 -32571198 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1840 377 300 99 52 chr1 164624722 164624954 -32570478 + L2a LINE L2 2176 2418 -1001 2 1840 367 199 52 6 chr1 164625020 164625115 -32570317 - B3A SINE B2 -70 125 23 2 1840 311 382 42 42 chr1 164625422 164625509 -32569923 + L2a LINE L2 2925 3014 -412 2 1840 836 136 173 0 chr1 164625509 164625671 -32569761 - B2_Mm2 SINE B2 -5 190 1 2 1840 311 382 42 42 chr1 164625671 164625796 -32569636 + L2a LINE L2 3015 3137 -289 2 1840 435 301 103 0 chr1 164626195 164626351 -32569081 + MER5A DNA MER1_type 12 183 -6 2 1841 400 216 21 11 chr1 164626610 164626721 -32568711 - B1_Mus2 SINE Alu 0 147 6 2 1841 518 291 196 21 chr1 164627026 164627409 -32568023 - L1MA5A LINE L1 -413 5884 5435 2 1841 353 254 16 89 chr1 164627778 164627968 -32567464 + (CTGGGG)n Simple_repeat Simple_repeat 4 179 0 2 1841 507 358 0 0 chr1 164628020 164628196 -32567236 + (CTGGGG)n Simple_repeat Simple_repeat 4 179 0 2 1841 269 271 30 30 chr1 164628207 164628306 -32567126 + (CTGGGG)n Simple_repeat Simple_repeat 2 100 0 2 1841 21 0 0 0 chr1 164628594 164628615 -32566817 + AT_rich Low_complexity Low_complexity 1 21 0 2 1841 216 0 0 0 chr1 164628680 164628704 -32566728 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1841 216 0 0 0 chr1 164629185 164629209 -32566223 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1841 784 118 8 32 chr1 164629209 164629321 -32566111 - B1_Mus1 SINE Alu -24 124 15 2 1841 556 244 36 22 chr1 164629448 164629586 -32565846 - ID_B1 SINE B4 -2 222 83 2 1841 407 283 106 24 chr1 164630077 164630200 -32565232 - ID_B1 SINE B4 -2 222 90 2 1841 291 307 216 10 chr1 164630235 164630439 -32564993 + Tigger7 DNA MER2_type 24 269 -2222 2 1841 265 254 157 88 chr1 164631156 164631303 -32564129 + Tigger7 DNA MER2_type 2157 2313 -178 2 1841 276 281 68 68 chr1 164631292 164631395 -32564037 - MER20 DNA MER1_type -60 159 57 2 1841 266 226 200 12 chr1 164631515 164631600 -32563832 - MER5A DNA MER1_type -88 101 1 2 1841 843 183 104 11 chr1 164633518 164633700 -32561732 - B3 SINE B2 -6 210 12 2 1841 462 231 58 25 chr1 164633893 164634013 -32561419 - ID_B1 SINE B4 -31 193 70 2 1841 289 263 129 43 chr1 164637076 164637239 -32558193 + L1MA9 LINE L1 5944 6120 -192 2 1841 678 244 8 0 chr1 164637707 164637834 -32557598 - RSINE1 SINE B4 -36 129 2 2 1841 180 0 0 0 chr1 164638399 164638419 -32557013 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 2 1841 21 100 0 0 chr1 164638631 164638701 -32556731 + AT_rich Low_complexity Low_complexity 1 70 0 2 1841 279 79 0 0 chr1 164639192 164639230 -32556202 + (CTG)n Simple_repeat Simple_repeat 1 38 0 2 1841 642 181 31 16 chr1 164640127 164640256 -32555176 + B1_Mm SINE Alu 4 134 -13 2 1841 180 280 0 0 chr1 164640596 164640696 -32554736 + CT-rich Low_complexity Low_complexity 6 105 0 2 1841 682 256 25 38 chr1 164641018 164641176 -32554256 - RSINE1 SINE B4 -2 163 8 2 1841 433 303 8 16 chr1 164641301 164641425 -32554007 + RSINE1 SINE B4 3 125 -40 2 1841 283 164 178 1 chr1 164642556 164642651 -32552781 - L1M5 LINE L1 -727 5435 5328 2 1841 911 50 8 0 chr1 164644873 164644992 -32550440 + B1_Mus2 SINE Alu 28 147 0 2 1841 246 62 0 0 chr1 164645050 164645082 -32550350 + (TATG)n Simple_repeat Simple_repeat 3 34 0 2 1841 189 94 0 0 chr1 164645404 164645436 -32549996 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1841 399 89 0 0 chr1 164646229 164646285 -32549147 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1841 401 227 41 10 chr1 164646670 164646768 -32548664 - B1_Mur1 SINE Alu 0 149 49 2 1841 312 300 60 60 chr1 164648183 164648300 -32547132 + PB1D10 SINE Alu 1 117 0 2 1841 255 283 68 99 chr1 164648334 164648526 -32546906 - Charlie4a DNA MER1_type -6 502 317 2 1841 437 179 10 69 chr1 164648524 164648626 -32546806 - PB1D9 SINE Alu 0 120 25 2 1841 238 300 131 77 chr1 164649625 164649755 -32545677 + MLT1F1 LTR MaLR 427 563 -6 2 1841 26 0 0 0 chr1 164650139 164650165 -32545267 + AT_rich Low_complexity Low_complexity 1 26 0 2 1841 271 259 0 0 chr1 164650255 164650309 -32545123 + B1F1 SINE Alu 1 54 -95 2 1841 199 289 77 26 chr1 164652923 164653001 -32542431 - MER5A DNA MER1_type -40 149 68 2 1841 286 330 27 99 chr1 164653816 164653903 -32541529 + B1F2 SINE Alu 36 123 -26 2 1841 2239 98 0 38 chr1 164653903 164654242 -32541190 + ORR1A3 LTR MaLR 1 326 0 2 1841 286 330 27 99 chr1 164654242 164654265 -32541167 + B1F2 SINE Alu 124 138 -11 2 1841 257 231 29 133 chr1 164654522 164654627 -32540805 + B3A SINE B2 89 182 -16 2 1841 22 0 0 0 chr1 164655229 164655251 -32540181 + AT_rich Low_complexity Low_complexity 1 22 0 2 1841 25 0 0 0 chr1 164655262 164655287 -32540145 + AT_rich Low_complexity Low_complexity 1 25 0 2 1841 210 71 0 0 chr1 164655309 164655337 -32540095 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1841 312 247 52 0 chr1 164655361 164655438 -32539994 - PB1D9 SINE Alu -38 82 2 2 1841 298 333 51 0 chr1 164655373 164655451 -32539981 - B4A SINE B4 -137 155 74 2 1841 328 307 0 16 chr1 164655509 164655638 -32539794 + Lx9 LINE L1 7316 7442 -202 2 1841 3189 66 47 0 chr1 164655677 164656101 -32539331 + L1_Mus1 LINE L1 6124 6567 0 2 1841 23 0 0 0 chr1 164656196 164656219 -32539213 + AT_rich Low_complexity Low_complexity 1 23 0 2 1841 858 175 216 0 chr1 164656227 164656398 -32539034 + B3 SINE B2 2 209 -7 2 1841 1163 82 0 0 chr1 164656407 164656554 -32538878 - B1_Mus1 SINE Alu 0 148 2 2 1841 4899 177 111 23 chr1 164657750 164658986 -32536446 + RMER12B LTR ERVK 1 1401 -3 2 1841 367 254 219 16 chr1 164659613 164659861 -32535571 + MLT1B LTR MaLR 17 350 -40 2 1841 321 239 147 0 chr1 164660210 164660319 -32535113 + MER2 DNA MER2_type 139 263 -82 2 1841 468 276 22 73 chr1 164660314 164660451 -32534981 - ID_B1 SINE B4 -5 219 90 2 1841 227 279 53 80 chr1 164660712 164660825 -32534607 + PB1 SINE Alu 12 121 -6 2 1841 432 248 20 105 chr1 164660838 164660991 -32534441 + MT2B LTR ERVL 125 264 -337 2 1841 937 88 36 7 chr1 164660883 164661021 -32534411 + B1_Mus1 SINE Alu 7 148 0 2 1841 207 0 0 0 chr1 164661023 164661046 -32534386 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1841 299 294 35 0 chr1 164661818 164661903 -32533529 - L1MA5A LINE L1 -63 6234 6147 2 1841 351 300 22 99 chr1 164662035 164662177 -32533255 + B1_Mur3 SINE Alu 2 127 -20 2 1841 997 246 303 14 chr1 164662256 164662685 -32532747 + RCHARR1 DNA MER1_type 53 605 -369 2 1841 314 186 298 27 chr1 164662774 164662962 -32532470 + RCHARR1 DNA MER1_type 736 974 0 2 1841 305 260 125 0 chr1 164663046 164663150 -32532282 + B4A SINE B4 90 206 -86 2 1841 638 188 112 8 chr1 164663819 164663953 -32531479 - B1_Mus1 SINE Alu 0 148 1 2 1841 826 10 0 10 chr1 164664014 164664118 -32531314 - B1_Mus2 SINE Alu -1 146 44 2 1841 302 130 80 80 chr1 164664057 164664132 -32531300 - RLTR25B LTR ERVK -519 509 435 2 1841 306 258 73 66 chr1 164664190 164664327 -32531105 - B1_Mus1 SINE Alu 0 148 11 2 1841 590 209 27 0 chr1 164664293 164664403 -32531029 - B3A SINE B2 -83 115 3 2 1841 220 433 87 0 chr1 164664509 164664613 -32530819 - MER91A DNA Tip100 -83 113 1 2 1841 428 222 36 18 chr1 164664691 164664801 -32530631 - B1_Mur1 SINE Alu -6 143 32 2 1841 538 223 71 7 chr1 164664845 164664985 -32530447 + B1_Mur3 SINE Alu 1 149 0 2 1841 320 182 18 0 chr1 164666135 164666190 -32529242 + PB1D10 SINE Alu 13 68 -49 2 1841 223 300 40 54 chr1 164666213 164666230 -32529202 + B4A SINE B4 70 85 -207 2 1841 285 261 133 22 chr1 164666230 164666320 -32529112 + PB1D7 SINE Alu 1 100 -20 2 1841 344 252 361 9 chr1 164666373 164666589 -32528843 - B4A SINE B4 0 292 1 3 1841 475 244 14 58 chr1 164666984 164667122 -32528310 + B1F2 SINE Alu 1 129 -18 3 1841 426 204 53 44 chr1 164667312 164667425 -32528007 - PB1D9 SINE Alu -6 114 1 3 1841 644 200 35 28 chr1 164667993 164668137 -32527295 + B1_Mur3 SINE Alu 2 146 -3 3 1841 193 278 119 9 chr1 164668652 164668761 -32526671 - MIRb SINE MIR -27 241 121 3 1841 295 295 121 13 chr1 164669021 164669238 -32526194 + MIR SINE MIR 15 261 -7 3 1841 1166 61 0 20 chr1 164671247 164671397 -32524035 + B1_Mus1 SINE Alu 2 148 0 3 1841 287 221 12 72 chr1 164671824 164671907 -32523525 - ID SINE ID -146 78 1 3 1841 180 291 93 0 chr1 164671984 164672070 -32523362 - L3 LINE CR1 -658 3831 3738 3 1841 985 226 70 78 chr1 164672164 164672533 -32522899 - MT2B LTR ERVL -8 593 174 3 1841 816 97 7 7 chr1 164672533 164672552 -32522880 - B2_Mm1a SINE B2 -12 181 162 3 1841 222 62 0 0 chr1 164672552 164672584 -32522848 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 3 1841 816 97 7 7 chr1 164672584 164672699 -32522733 - B2_Mm1a SINE B2 -32 161 48 3 1841 1113 96 0 0 chr1 164672754 164672900 -32522532 + B1_Mus1 SINE Alu 3 148 0 3 1841 487 195 0 63 chr1 164672908 164673034 -32522398 - MT2B LTR ERVL -415 118 1 3 1841 397 189 16 20 chr1 164673104 164673209 -32522223 - B1_Mur2 SINE Alu -14 135 3 3 1841 213 305 17 0 chr1 164673221 164673280 -32522152 - PB1D9 SINE Alu -60 60 1 3 1841 477 279 183 16 chr1 164673492 164673743 -32521689 - MamRep605 Unknown Unknown -529 347 55 3 1841 509 264 80 0 chr1 164673819 164673944 -32521488 + RSINE1 SINE B4 2 136 -29 3 1841 288 290 0 0 chr1 164674020 164674089 -32521343 + B4A SINE B4 13 81 -211 3 1841 1668 152 65 95 chr1 164674053 164674453 -32520979 + ORR1B1 LTR MaLR 7 394 0 3 1841 235 297 78 19 chr1 164674470 164674573 -32520859 + B4A SINE B4 90 198 -94 3 1841 281 309 0 35 chr1 164674625 164674739 -32520693 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 3 1841 29 38 0 19 chr1 164674994 164675021 -32520411 + AT_rich Low_complexity Low_complexity 1 27 0 3 1841 699 169 33 66 chr1 164675021 164675173 -32520259 + B1_Mur3 SINE Alu 3 149 0 3 1841 29 38 0 19 chr1 164675173 164675199 -32520233 + AT_rich Low_complexity Low_complexity 1 26 0 3 1841 491 244 81 7 chr1 164675285 164675421 -32520011 + B1_Mur2 SINE Alu 2 147 -2 3 1841 265 239 19 86 chr1 164675446 164675551 -32519881 + PB1D7 SINE Alu 23 120 0 3 1841 370 289 46 108 chr1 164675726 164675920 -32519512 + B3A SINE B2 1 182 -16 3 1841 405 307 20 10 chr1 164677230 164677332 -32518100 - RSINE1 SINE B4 -61 104 2 3 1841 2024 207 35 35 chr1 164677430 164677790 -32517642 + Lx7 LINE L1 7161 7521 -175 3 1841 1243 34 0 0 chr1 164677790 164677936 -32517496 - B1_Mus1 SINE Alu -1 147 2 3 1841 2024 207 35 35 chr1 164677936 164678055 -32517377 + Lx7 LINE L1 7522 7645 -51 3 1841 2314 119 135 0 chr1 164678055 164678426 -32517006 - MTC LTR MaLR 0 421 1 3 1841 2024 207 35 35 chr1 164678426 164678465 -32516967 + Lx7 LINE L1 7646 7679 -17 3 1841 189 0 0 0 chr1 164678468 164678489 -32516943 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 3 1841 2356 222 95 50 chr1 164678742 164678855 -32516577 + RMER19A LTR ERVK 1 189 -548 3 1841 438 53 0 0 chr1 164678855 164678912 -32516520 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1841 2356 199 123 21 chr1 164678912 164679410 -32516022 + RMER19A LTR ERVK 190 736 -1 3 1841 415 287 0 27 chr1 164680287 164680398 -32515034 + PB1D10 SINE Alu 1 108 -9 3 1841 895 278 35 32 chr1 164681635 164681947 -32513485 - L1MA4 LINE L1 -359 5941 5629 3 1841 1185 54 0 13 chr1 164681950 164682099 -32513333 + B1_Mus2 SINE Alu 1 147 0 3 1841 207 0 0 0 chr1 164682116 164682139 -32513293 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1841 459 304 45 40 chr1 164682245 164682444 -32512988 - MER57E1 LTR ERV1 -30 342 143 3 1841 1087 200 124 29 chr1 164682868 164683169 -32512263 + RMER19B LTR ERVK 1 357 -380 3 1841 232 358 32 32 chr1 164683624 164683748 -32511684 + MTEa LTR MaLR 22 145 -214 3 1841 204 188 0 0 chr1 164683777 164683809 -32511623 + polypyrimidine Low_complexity Low_complexity 3 34 0 3 1841 309 277 12 24 chr1 164683918 164684003 -32511429 + MTEa LTR MaLR 282 365 -14 3 1841 4702 200 78 21 chr1 164684354 164684470 -32510962 - RMER1A Other Other -4 1026 911 3 1841 486 0 0 0 chr1 164684470 164684524 -32510908 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1841 4702 216 71 26 chr1 164684524 164685589 -32509843 - RMER1A Other Other -120 910 1 3 1841 231 215 45 15 chr1 164685557 164685623 -32509809 - RMER1B Other Other -632 434 367 3 1841 255 31 0 0 chr1 164685631 164685663 -32509769 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1841 409 328 32 37 chr1 164685667 164685857 -32509575 - B4A SINE B4 -96 196 8 3 1841 296 24 24 0 chr1 164686083 164686124 -32509308 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1841 25 0 0 0 chr1 164686201 164686226 -32509206 + AT_rich Low_complexity Low_complexity 1 25 0 3 1841 37893 55 6 2 chr1 164686273 164692432 -32503000 - L1Md_F3 LINE L1 -14 6570 446 3 1841 445 308 0 15 chr1 164692440 164692575 -32502857 - ID_B1 SINE B4 0 224 92 3 1841 522 261 48 27 chr1 164693226 164693372 -32502060 + B3A SINE B2 12 160 -38 3 1841 207 0 0 0 chr1 164693493 164693516 -32501916 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1841 351 257 0 60 chr1 164693995 164694046 -32501386 - MLT1A LTR MaLR 0 374 328 3 1841 2136 143 82 0 chr1 164694046 164694410 -32501022 + ORR1B1 LTR MaLR 1 394 0 3 1841 351 257 0 60 chr1 164694410 164694474 -32500958 - MLT1A LTR MaLR -47 327 266 3 1841 223 137 0 56 chr1 164694476 164694530 -32500902 + B3A SINE B2 1 51 -147 3 1841 867 204 123 10 chr1 164694538 164694741 -32500691 - URR1A DNA MER1_type 0 226 1 3 1841 266 178 206 0 chr1 164694762 164694869 -32500563 - RLTR22_Mur LTR ERVK -805 1043 915 3 1841 3496 165 50 16 chr1 164694873 164695630 -32499802 - RLTR22_Mur LTR ERVK -1049 799 17 3 1841 556 217 35 48 chr1 164695964 164696109 -32499323 - B3A SINE B2 -16 182 40 3 1841 333 0 0 0 chr1 164696110 164696147 -32499285 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1841 342 0 0 0 chr1 164696147 164696184 -32499248 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1841 249 254 18 0 chr1 164696974 164697042 -32498390 - PB1D10 SINE Alu -79 70 1 3 1841 920 289 54 10 chr1 164697238 164697532 -32497900 + MER2 DNA MER2_type 7 313 -32 3 1841 22 0 0 0 chr1 164697623 164697645 -32497787 + AT_rich Low_complexity Low_complexity 1 22 0 3 1841 4068 48 111 2 chr1 164697675 164698218 -32497214 - Lx3_Mus LINE L1 -8 7001 6400 3 1841 672 124 0 0 chr1 164698488 164698593 -32496839 + (GGA)n Simple_repeat Simple_repeat 3 107 0 3 1841 455 224 6 0 chr1 164698684 164698858 -32496574 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1841 311 264 0 6 chr1 164698879 164699047 -32496385 + (TG)n Simple_repeat Simple_repeat 2 168 0 3 1841 5223 45 2 0 chr1 164699049 164699669 -32495763 + L1_Mus1 LINE L1 5946 6566 -1 3 1841 270 245 0 0 chr1 164699689 164699787 -32495645 + (TG)n Simple_repeat Simple_repeat 2 99 0 3 1841 309 89 0 0 chr1 164700071 164700116 -32495316 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1841 346 176 1 77 chr1 164701672 164701795 -32493637 - PB1D7 SINE Alu -1 119 10 3 1841 643 139 17 0 chr1 164702248 164702363 -32493069 - B1_Mur3 SINE Alu 0 149 33 3 1841 434 254 0 76 chr1 164702485 164702604 -32492828 - ID_B1 SINE B4 -32 192 83 3 1841 480 241 0 0 chr1 164702801 164702909 -32492523 - ID_B1 SINE B4 -2 222 115 3 1841 2129 98 13 0 chr1 164704455 164704770 -32490662 - ORR1A2 LTR MaLR -8 319 1 3 1841 700 301 78 32 chr1 164705720 164706029 -32489403 - MER21B LTR ERV1 -211 652 330 3 1841 267 358 33 104 chr1 164706053 164706198 -32489234 - MER21B LTR ERV1 -621 242 109 3 1841 1505 158 117 80 chr1 164706198 164706549 -32488883 - ORR1B2 LTR MaLR -3 364 1 3 1841 267 358 33 104 chr1 164706549 164706615 -32488817 - MER21B LTR ERV1 -755 108 46 3 1841 262 215 51 146 chr1 164706763 164706921 -32488511 + MER2 DNA MER2_type 86 228 -117 3 1841 315 0 0 0 chr1 164706925 164706960 -32488472 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1841 805 261 25 129 chr1 164707025 164707251 -32488181 - B4 SINE B4 0 292 90 3 1841 215 0 0 62 chr1 164707251 164707283 -32488149 + (CAAAC)n Simple_repeat Simple_repeat 4 33 0 3 1841 805 261 25 129 chr1 164707283 164707299 -32488133 - B4 SINE B4 -203 89 78 3 1841 698 234 0 7 chr1 164707299 164707437 -32487995 + B1_Mur2 SINE Alu 5 141 -8 3 1841 805 261 25 129 chr1 164707437 164707518 -32487914 - B4 SINE B4 -215 77 3 3 1841 335 230 170 7 chr1 164708023 164708176 -32487256 - Lx9 LINE L1 -35 7609 7432 3 1841 360 0 0 0 chr1 164709545 164709585 -32485847 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1841 734 245 10 53 chr1 164709696 164709903 -32485529 - B3A SINE B2 0 198 1 3 1841 1632 37 0 0 chr1 164710513 164710701 -32484731 + B2_Mm1a SINE B2 1 188 -5 3 1841 3318 30 2 15 chr1 164710898 164711337 -32484095 + L1Md_F2 LINE L1 6187 6582 0 3 1841 339 25 0 0 chr1 164711584 164711624 -32483808 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1841 381 225 0 0 chr1 164711718 164711807 -32483625 + (TATG)n Simple_repeat Simple_repeat 4 92 0 3 1841 308 189 23 139 chr1 164711882 164711968 -32483464 - PB1D7 SINE Alu -32 88 13 3 1841 581 299 7 0 chr1 164712673 164712827 -32482605 - ID_B1 SINE B4 0 224 70 3 1841 1489 69 5 5 chr1 164713120 164713310 -32482122 - B2_Mm1t SINE B2 -3 190 1 3 1841 31 58 0 0 chr1 164713484 164713536 -32481896 + AT_rich Low_complexity Low_complexity 1 52 0 3 1841 591 278 154 0 chr1 164714387 164714633 -32480799 - B4 SINE B4 -1 291 8 3 1841 2480 75 25 3 chr1 164714831 164715151 -32480281 - ORR1A2 LTR MaLR 0 327 1 3 1841 498 180 9 65 chr1 164715789 164715896 -32479536 + B1_Mur2 SINE Alu 1 101 -48 3 1841 8785 210 35 23 chr1 164716131 164716163 -32479269 - Lx6 LINE L1 -11 7449 7418 3 1841 387 0 0 0 chr1 164716163 164716206 -32479226 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1841 8785 210 35 23 chr1 164716206 164716877 -32478555 - Lx6 LINE L1 -43 7417 6718 3 1841 1694 174 42 81 chr1 164716877 164717259 -32478173 + ORR1B2 LTR MaLR 1 367 0 3 1841 8785 188 25 16 chr1 164717259 164718631 -32476801 - Lx6 LINE L1 -743 6717 5351 3 1841 7982 92 44 15 chr1 164718629 164720368 -32475064 - L1Md_F2 LINE L1 0 6582 4762 3 1841 734 170 61 7 chr1 164720366 164720514 -32474918 - L1_Mur3 LINE L1 -3290 2590 2435 3 1841 1431 155 20 90 chr1 164720504 164720858 -32474574 - L1_Mur3 LINE L1 -3717 2163 1835 3 1841 1425 255 73 37 chr1 164720856 164721432 -32474000 - L1_Mur3 LINE L1 -7047 681 17 3 1841 413 311 52 45 chr1 164721595 164721750 -32473682 + RSINE1 SINE B4 3 158 -7 4 1841 271 251 129 22 chr1 164722874 164722996 -32472436 - MIRm SINE MIR -96 172 43 4 1841 463 239 25 41 chr1 164723360 164723482 -32471950 + PB1D9 SINE Alu 1 120 0 4 1841 258 280 43 0 chr1 164723570 164723663 -32471769 + MTD LTR MaLR 18 114 -305 4 1841 290 156 0 0 chr1 164724869 164724914 -32470518 + PB1 SINE Alu 26 70 -57 4 1841 203 211 35 17 chr1 164724915 164724973 -32470459 - L2 LINE L2 -1086 2333 2275 4 1841 234 0 0 0 chr1 164725565 164725591 -32469841 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1841 279 0 0 0 chr1 164726062 164726093 -32469339 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1841 1119 82 0 0 chr1 164726093 164726240 -32469192 - B1_Mm SINE Alu 0 147 1 4 1841 288 342 9 9 chr1 164727056 164727171 -32468261 + PB1D10 SINE Alu 1 115 -2 4 1841 246 192 0 0 chr1 164727172 164727224 -32468208 + GA-rich Low_complexity Low_complexity 1 52 0 4 1841 297 267 27 0 chr1 164727224 164727299 -32468133 + ID4_ SINE ID 4 80 -3 4 1841 335 262 25 0 chr1 164727444 164727524 -32467908 - B3A SINE B2 -102 96 15 4 1841 855 140 67 50 chr1 164727798 164727978 -32467454 + B2_Mm2 SINE B2 2 184 -11 4 1841 264 167 0 0 chr1 164727979 164728027 -32467405 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1841 684 197 0 28 chr1 164728122 164728263 -32467169 + B1_Mur3 SINE Alu 2 138 -11 4 1841 689 180 17 6 chr1 164729591 164729764 -32465668 + GA-rich Low_complexity Low_complexity 1 175 0 4 1841 338 318 65 0 chr1 164729764 164729871 -32465561 - RSINE1 SINE B4 -47 118 5 4 1841 342 279 13 0 chr1 164729942 164730021 -32465411 - ID4 SINE ID 0 83 4 4 1841 10078 19 0 0 chr1 164730554 164731691 -32463741 + L1Md_T LINE L1 4450 5586 -297 4 1841 8636 32 0 0 chr1 164731691 164732687 -32462745 + L1Md_T LINE L1 5587 6582 0 4 1841 939 262 86 128 chr1 164732938 164733586 -32461846 + L1MA4 LINE L1 5408 6028 -272 4 1841 612 234 176 47 chr1 164734176 164734431 -32461001 - B4A SINE B4 0 292 5 4 1841 191 189 0 19 chr1 164734923 164734977 -32460455 + GA-rich Low_complexity Low_complexity 3 55 0 4 1841 714 270 0 0 chr1 164735615 164735763 -32459669 + RSINE1 SINE B4 3 150 -15 4 1841 1093 284 95 15 chr1 164735766 164736227 -32459205 + L1M2 LINE L1 3977 4474 -1669 4 1841 266 310 14 0 chr1 164736227 164736298 -32459134 + RSINE1 SINE B4 2 73 -92 4 1841 21 36 0 0 chr1 164736411 164736439 -32458993 + AT_rich Low_complexity Low_complexity 1 28 0 4 1841 248 173 24 36 chr1 164736495 164736579 -32458853 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 4 1841 882 278 61 18 chr1 164736579 164736857 -32458575 + B4A SINE B4 2 291 -1 4 1841 306 302 71 14 chr1 164737022 164737163 -32458269 + MARNA DNA Mariner 282 430 -156 4 1841 383 284 68 63 chr1 164740205 164740457 -32454975 + MIR SINE MIR 10 262 0 4 1841 968 254 14 9 chr1 164740568 164740779 -32454653 + B3 SINE B2 5 216 0 4 1841 302 0 26 0 chr1 164740920 164740958 -32454474 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 1841 383 150 88 0 chr1 164741570 164741650 -32453782 + ORR1C2 LTR MaLR 11 97 -287 4 1841 1420 25 0 0 chr1 164741651 164741808 -32453624 - L1Md_F3 LINE L1 -335 6249 6093 4 1841 2842 26 6 14 chr1 164741808 164742153 -32453279 + L1Md_F3 LINE L1 6240 6581 -3 4 1841 875 214 191 19 chr1 164742153 164742420 -32453012 + ORR1C2 LTR MaLR 72 384 0 4 1841 582 113 0 0 chr1 164744446 164744543 -32450889 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 1841 211 349 8 76 chr1 164744894 164745012 -32450420 - PB1D10 SINE Alu -5 112 3 4 1841 421 286 80 0 chr1 164745772 164745884 -32449548 + B1F1 SINE Alu 16 136 -13 4 1841 366 61 0 0 chr1 164746387 164746436 -32448996 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 4 1841 2042 155 17 11 chr1 164747265 164747617 -32447815 - ORR1C1 LTR MaLR -24 354 1 4 1841 226 292 155 10 chr1 164747861 164747958 -32447474 - B1F1 SINE Alu -5 112 2 4 1841 264 189 0 0 chr1 164748100 164748153 -32447279 - B4 SINE B4 -79 213 161 4 1841 305 294 0 47 chr1 164749116 164749223 -32446209 - PB1D10 SINE Alu -15 102 1 4 1841 773 298 67 62 chr1 164749626 164750012 -32445420 - L1MA10 LINE L1 -4 6330 5943 4 1841 36101 35 0 0 chr1 164750020 164755447 -32439985 + L1Md_T LINE L1 66 5589 -297 4 1841 9127 7 0 0 chr1 164755447 164756470 -32438962 + L1Md_T LINE L1 5590 6585 0 4 1841 527 236 0 8 chr1 164756470 164756598 -32438834 - L1MA10 LINE L1 -228 5940 5814 4 1841 329 275 0 0 chr1 164756600 164756680 -32438752 - B1_Mur1 SINE Alu -2 147 68 4 230 2081 174 124 21 chr1 164757423 164757899 -32437533 - RLTR11A2 LTR ERVK 0 527 3 4 1842 7427 102 21 5 chr1 164758141 164759462 -32435970 - L1_Mus4 LINE L1 0 6636 5290 4 1842 180 0 0 0 chr1 164759650 164759670 -32435762 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1842 418 255 9 0 chr1 164760623 164760729 -32434703 - PB1D7 SINE Alu -2 118 12 4 1842 1056 76 0 0 chr1 164760729 164760874 -32434558 - MTB LTR MaLR 0 400 256 4 1842 1415 42 16 21 chr1 164760857 164761050 -32434382 + MTB LTR MaLR 209 400 0 4 1842 757 221 29 40 chr1 164761298 164761472 -32433960 + B3 SINE B2 2 173 -43 4 1842 1088 57 35 0 chr1 164761501 164761642 -32433790 + B1_Mm SINE Alu 2 147 0 4 1842 235 312 8 68 chr1 164761802 164761919 -32433513 - ID_B1 SINE B4 -21 203 94 4 1842 455 292 0 36 chr1 164761821 164761931 -32433501 - PB1D7 SINE Alu -14 106 1 4 1842 880 289 104 0 chr1 164762011 164762271 -32433161 - B4 SINE B4 -5 287 1 4 1842 207 88 0 0 chr1 164764437 164764471 -32430961 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1842 884 254 47 19 chr1 164765431 164765827 -32429605 + MT2A LTR ERVL 1 553 -48 4 1842 21 36 0 0 chr1 164765832 164765860 -32429572 + AT_rich Low_complexity Low_complexity 1 28 0 4 1842 549 115 0 0 chr1 164766829 164766916 -32428516 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 4 1842 338 217 199 15 chr1 164766922 164767053 -32428379 - HAL1-3A_ME LINE L1 -419 2439 2285 4 1842 890 171 4 12 chr1 164767071 164767327 -32428105 + CT-rich Low_complexity Low_complexity 1 253 0 4 1842 853 230 96 34 chr1 164768350 164768713 -32426719 + MTD LTR MaLR 1 418 -1 4 1842 378 311 53 8 chr1 164769255 164769388 -32426044 + ID_B1 SINE B4 77 215 -9 4 1842 266 65 87 0 chr1 164769461 164769507 -32425925 - RLTR17 LTR ERVK -642 50 1 4 1842 427 277 10 0 chr1 164769509 164769610 -32425822 + B1F2 SINE Alu 31 132 -17 4 1842 270 242 17 147 chr1 164769610 164769625 -32425807 + ID_B1 SINE B4 112 212 -12 4 1842 2037 117 12 15 chr1 164770668 164771006 -32424426 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1842 56313 29 9 2 chr1 164771006 164777431 -32418001 + IAPEz-int LTR ERVK 8 6478 -3 4 1842 2037 117 12 15 chr1 164777435 164777773 -32417659 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1842 316 306 73 46 chr1 164779185 164779336 -32416096 - RSINE1 SINE B4 -8 157 3 4 1842 261 0 0 0 chr1 164779780 164779809 -32415623 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 4 1842 564 65 0 0 chr1 164781703 164781780 -32413652 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1842 549 0 0 0 chr1 164782071 164782132 -32413300 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 4 1842 470 282 228 16 chr1 164782364 164782667 -32412765 + Lx9 LINE L1 7226 7592 -52 4 1842 322 234 91 27 chr1 164782689 164782799 -32412633 + Charlie10 DNA MER1_type 2133 2249 -573 4 1842 312 48 0 0 chr1 164783139 164783181 -32412251 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1842 779 64 9 0 chr1 164783181 164783290 -32412142 + (GA)n Simple_repeat Simple_repeat 2 112 0 4 1842 897 205 60 85 chr1 164784542 164784684 -32410748 + L1_Mur3 LINE L1 5223 5359 -521 4 1842 1100 66 0 0 chr1 164784684 164784820 -32410612 + B1_Mus2 SINE Alu 2 137 -10 4 1842 540 0 0 0 chr1 164784820 164784880 -32410552 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 4 1842 897 205 60 85 chr1 164784880 164785067 -32410365 + L1_Mur3 LINE L1 5360 5544 -336 4 1842 416 289 16 32 chr1 164785364 164785489 -32409943 + RSINE1 SINE B4 43 165 0 4 1842 566 118 11 0 chr1 164785599 164785692 -32409740 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 1842 186 43 0 0 chr1 164785953 164785976 -32409456 + (TGG)n Simple_repeat Simple_repeat 3 25 0 4 1842 180 0 0 0 chr1 164786306 164786326 -32409106 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1842 636 98 0 0 chr1 164786326 164786428 -32409004 + (GA)n Simple_repeat Simple_repeat 2 103 0 4 1842 839 274 53 11 chr1 164786428 164786690 -32408742 - B4A SINE B4 -19 273 1 4 1842 240 248 27 33 chr1 164787009 164787159 -32408273 + CT-rich Low_complexity Low_complexity 1 149 0 4 1842 21 0 0 0 chr1 164788244 164788265 -32407167 + GC_rich Low_complexity Low_complexity 1 21 0 4 1842 216 0 0 0 chr1 164788802 164788826 -32406606 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1842 217 146 0 24 chr1 164789312 164789354 -32406078 + (TGGG)n Simple_repeat Simple_repeat 1 41 0 4 1842 316 273 133 22 chr1 164790550 164790730 -32404702 + MIR SINE MIR 48 247 -15 4 1842 790 234 87 5 chr1 164790856 164791062 -32404370 - ID_B1 SINE B4 0 224 2 4 1842 30 27 0 0 chr1 164791298 164791335 -32404097 + AT_rich Low_complexity Low_complexity 1 37 0 4 1842 284 161 57 0 chr1 164791335 164791459 -32403973 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 1842 32 67 0 0 chr1 164791459 164791519 -32403913 + AT_rich Low_complexity Low_complexity 1 60 0 4 1842 2073 113 29 44 chr1 164791520 164791863 -32403569 - Lx4A LINE L1 -2 7056 6719 4 1842 417 169 0 0 chr1 164791869 164791940 -32403492 + RLTR11A2 LTR ERVK 457 527 0 4 1842 243 309 29 29 chr1 164792132 164792305 -32403127 + MIR SINE MIR 1 160 -102 4 1842 243 0 0 0 chr1 164792343 164792370 -32403062 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1842 213 94 0 0 chr1 164793623 164793655 -32401777 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1842 556 203 23 30 chr1 164794826 164794837 -32400595 - B1F SINE Alu -5 144 137 5 1842 952 111 7 0 chr1 164794837 164794990 -32400442 - Lx2 LINE L1 0 6997 6844 5 1842 556 203 23 30 chr1 164794990 164795110 -32400322 - B1F SINE Alu -13 136 14 5 1842 455 214 20 85 chr1 164795110 164795130 -32400302 - ID_B1 SINE B4 -13 211 79 5 1842 658 278 150 15 chr1 164795202 164795541 -32399891 + MER119 DNA MER1_type 198 582 -1 5 1842 324 0 0 0 chr1 164797192 164797228 -32398204 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1842 208 327 43 17 chr1 164797234 164797349 -32398083 + MIRb SINE MIR 92 209 -59 5 1842 2780 138 35 20 chr1 164798250 164798758 -32396674 - RLTR13D2 LTR ERVK 0 1023 508 5 1842 929 204 82 22 chr1 164798738 164798969 -32396463 - RLTR13D2 LTR ERVK -559 247 3 5 1842 885 242 0 15 chr1 164799353 164799554 -32395878 - B3A SINE B2 0 198 1 5 1842 251 141 21 21 chr1 164799696 164799790 -32395642 + (CAAA)n Simple_repeat Simple_repeat 2 95 0 5 1842 275 270 10 29 chr1 164800040 164800143 -32395289 - B2_Mm2 SINE B2 -93 102 2 5 1842 230 231 92 0 chr1 164800281 164800346 -32395086 + L2a LINE L2 3356 3426 0 5 1842 405 312 7 27 chr1 164801730 164801878 -32393554 + LTR16B2 LTR ERVL 292 436 -26 5 1842 459 144 0 0 chr1 164802452 164802549 -32392883 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1842 306 289 48 0 chr1 164802585 164802689 -32392743 - PB1D10 SINE Alu -8 109 1 5 1842 539 128 0 21 chr1 164802713 164802809 -32392623 + (CCCCCT)n Simple_repeat Simple_repeat 5 98 0 5 1842 279 0 0 0 chr1 164802810 164802841 -32392591 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1842 366 23 0 0 chr1 164803006 164803049 -32392383 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1842 460 247 73 27 chr1 164803395 164803545 -32391887 - MER58A DNA MER1_type -4 220 64 5 1842 387 0 0 0 chr1 164803654 164803697 -32391735 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1842 259 254 119 0 chr1 164803697 164803764 -32391668 - RSINE1 SINE B4 -1 164 90 5 1842 4089 52 32 15 chr1 164803764 164804290 -32391142 + L1Md_F2 LINE L1 6044 6578 -4 5 1842 300 284 0 0 chr1 164804343 164804410 -32391022 - RSINE1 SINE B4 -91 74 8 5 1842 22 0 0 0 chr1 164804464 164804486 -32390946 + AT_rich Low_complexity Low_complexity 1 22 0 5 1842 205 154 51 0 chr1 164804604 164804643 -32390789 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 1842 925 261 42 11 chr1 164804697 164804957 -32390475 - B4 SINE B4 -23 269 2 5 1842 1004 144 209 0 chr1 164805088 164805275 -32390157 + URR1A DNA MER1_type 1 226 0 5 1842 635 230 7 0 chr1 164805724 164805859 -32389573 - B1_Mur1 SINE Alu -2 147 12 5 1842 214 290 38 127 chr1 164805725 164805883 -32389549 - B4A SINE B4 -68 224 81 5 1842 273 235 36 73 chr1 164806184 164806294 -32389138 + MIRb SINE MIR 125 230 -38 5 1842 332 229 86 0 chr1 164806471 164806541 -32388891 - PB1D9 SINE Alu -44 76 1 5 1842 185 366 7 43 chr1 164808521 164808661 -32386771 - L2 LINE L2 -589 2830 2696 5 1842 669 98 0 0 chr1 164808708 164808820 -32386612 + (TC)n Simple_repeat Simple_repeat 1 112 0 5 1842 401 228 88 0 chr1 164809441 164809555 -32385877 - B1F1 SINE Alu -8 141 18 5 1842 362 250 65 0 chr1 164809559 164809651 -32385781 + ID_B1 SINE B4 116 213 -11 5 1842 456 19 0 0 chr1 164809710 164809763 -32385669 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1842 321 297 30 52 chr1 164810239 164810374 -32385058 + RSINE1 SINE B4 6 137 -28 5 1842 573 15 0 0 chr1 164810382 164810448 -32384984 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1842 510 17 0 0 chr1 164811401 164811460 -32383972 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1842 196 137 235 0 chr1 164811744 164811795 -32383637 - L3 LINE CR1 -143 4346 4284 5 1842 420 67 0 0 chr1 164811853 164811913 -32383519 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1842 458 114 0 12 chr1 164812418 164812498 -32382934 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1842 410 256 158 38 chr1 164812502 164812660 -32382772 - B4 SINE B4 -21 271 95 5 1842 300 186 0 0 chr1 164812676 164812735 -32382697 + CT-rich Low_complexity Low_complexity 3 61 0 5 1842 295 257 14 0 chr1 164812818 164812892 -32382540 - B4 SINE B4 -217 75 1 5 1842 396 184 115 39 chr1 164813339 164813469 -32381963 - Lx9 LINE L1 0 7644 7505 5 1842 437 340 5 39 chr1 164813679 164813884 -32381548 + MIR SINE MIR 13 210 -52 5 1842 24 32 0 0 chr1 164814346 164814377 -32381055 + AT_rich Low_complexity Low_complexity 1 31 0 5 1842 1158 81 0 0 chr1 164814750 164814898 -32380534 - B1_Mus1 SINE Alu 0 148 1 5 1842 939 52 39 28 chr1 164815009 164815187 -32380245 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1842 648 298 86 30 chr1 164815187 164815384 -32380048 - B4 SINE B4 -75 217 10 5 1842 610 194 69 15 chr1 164815439 164815570 -32379862 + B1_Mur3 SINE Alu 2 139 -10 5 1842 2211 156 23 18 chr1 164815614 164816012 -32379420 + Lx4B LINE L1 6655 7054 -4 5 1842 189 0 0 0 chr1 164816027 164816048 -32379384 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1842 714 136 0 0 chr1 164816048 164816166 -32379266 + (GA)n Simple_repeat Simple_repeat 1 118 0 5 1842 317 348 6 43 chr1 164816184 164816346 -32379086 - MIR3 SINE MIR -44 164 9 5 1842 1031 36 7 0 chr1 164819070 164819208 -32376224 + B1_Mus2 SINE Alu 9 147 0 5 1842 22 35 0 0 chr1 164819448 164819477 -32375955 + AT_rich Low_complexity Low_complexity 1 29 0 5 1842 813 256 63 42 chr1 164819487 164819534 -32375898 - Lx6 LINE L1 -84 7376 7326 5 1842 402 21 0 0 chr1 164819534 164819581 -32375851 + (CCAA)n Simple_repeat Simple_repeat 4 50 0 5 1842 813 256 63 42 chr1 164819581 164819770 -32375662 - Lx6 LINE L1 -135 7325 7137 5 1842 295 257 0 14 chr1 164819787 164819858 -32375574 + MTD LTR MaLR 143 212 -207 5 1842 1045 253 194 14 chr1 164820158 164820503 -32374929 + MTD LTR MaLR 13 419 0 5 1842 342 0 0 0 chr1 164822999 164823037 -32372395 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1842 1082 52 0 0 chr1 164823037 164823171 -32372261 - B1_Mus2 SINE Alu -12 135 2 5 1842 237 209 0 0 chr1 164824128 164824171 -32371261 - PB1 SINE Alu -3 124 82 5 1842 566 264 21 7 chr1 164824761 164824906 -32370526 - B1F SINE Alu -1 148 2 5 1842 272 320 92 59 chr1 164824913 164825218 -32370214 + L3 LINE CR1 3552 3866 -623 5 1842 213 65 0 0 chr1 164825888 164825919 -32369513 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1842 438 316 7 50 chr1 164826860 164827000 -32368432 + RSINE1 SINE B4 11 144 -21 5 1842 306 73 0 0 chr1 164827024 164827065 -32368367 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1842 372 250 0 0 chr1 164827064 164827176 -32368256 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 1842 252 0 0 0 chr1 164827482 164827510 -32367922 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1842 378 0 0 0 chr1 164827510 164827551 -32367881 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1842 385 312 0 0 chr1 164827582 164827691 -32367741 - PB1D10 SINE Alu 0 117 9 5 1842 563 242 53 0 chr1 164829289 164829421 -32366011 - RSINE1 SINE B4 -22 143 5 5 1842 4350 52 30 12 chr1 164829434 164829997 -32365435 + L1Md_F2 LINE L1 6009 6581 -1 5 1842 2058 88 17 10 chr1 164830010 164830310 -32365122 - L1_Mus4 LINE L1 -7 6629 6328 5 1842 762 314 13 4 chr1 164830311 164830541 -32364891 - B4A SINE B4 -52 240 9 5 1842 450 79 0 0 chr1 164831766 164831829 -32363603 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1842 1461 153 78 11 chr1 164831830 164832101 -32363331 - Lx4A LINE L1 -10 7048 6760 5 1842 277 274 117 7 chr1 164832357 164832511 -32362921 - L1M5 LINE L1 -356 5768 5598 5 1842 408 232 106 28 chr1 164832518 164832660 -32362772 - MER5A1 DNA MER1_type -6 160 8 5 1842 205 386 42 21 chr1 164833021 164833214 -32362218 + L3 LINE CR1 4247 4443 -46 5 1842 1312 277 34 120 chr1 164833835 164834104 -32361328 - L1MB7 LINE L1 -3 6181 5937 5 1842 585 241 36 0 chr1 164834104 164834241 -32361191 - B1_Mur1 SINE Alu -7 142 1 5 1842 1312 274 58 98 chr1 164834241 164835123 -32360309 - L1MB7 LINE L1 -248 5936 5089 5 1842 226 333 0 28 chr1 164836389 164836497 -32358935 - L1MB7 LINE L1 -4620 1546 1442 5 1842 765 61 0 0 chr1 164836663 164836762 -32358670 + (TTTTG)n Simple_repeat Simple_repeat 2 100 0 5 1842 1642 233 157 30 chr1 164836818 164837310 -32358122 + RMER2 LTR ERV1 3 556 -11 5 1842 22 35 0 0 chr1 164837528 164837557 -32357875 + AT_rich Low_complexity Low_complexity 1 29 0 5 1842 702 65 0 0 chr1 164837863 164837955 -32357477 + (TCCCC)n Simple_repeat Simple_repeat 4 95 0 5 1842 317 288 195 0 chr1 164837981 164838099 -32357333 - B1F SINE Alu -6 143 3 5 1842 382 303 102 14 chr1 164839817 164840111 -32355321 + L1MC4 LINE L1 109 428 -5787 5 1842 253 277 53 11 chr1 164840381 164840476 -32354956 + L1MC4 LINE L1 657 755 -5460 5 1842 307 390 31 39 chr1 164840526 164840782 -32354650 + L1ME3B LINE L1 5638 5891 -349 5 1842 1277 103 22 0 chr1 164841897 164842081 -32353351 + B2_Mm2 SINE B2 1 188 -7 5 1842 847 117 0 43 chr1 164842547 164842735 -32352697 + GA-rich Low_complexity Low_complexity 1 180 0 5 1842 249 0 0 105 chr1 164842736 164842793 -32352639 + (GGAGAA)n Simple_repeat Simple_repeat 5 55 0 5 1842 857 90 11 43 chr1 164842793 164842978 -32352454 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 1842 243 167 45 0 chr1 164842978 164843044 -32352388 + GA-rich Low_complexity Low_complexity 4 72 0 5 1842 498 294 112 58 chr1 164843258 164843446 -32351986 + B3A SINE B2 1 198 0 5 1842 254 256 11 23 chr1 164844418 164844506 -32350926 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 1842 23 54 0 0 chr1 164844878 164844915 -32350517 + AT_rich Low_complexity Low_complexity 1 37 0 5 1842 189 0 0 0 chr1 164845484 164845505 -32349927 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1842 279 0 0 0 chr1 164845505 164845535 -32349897 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1842 230 314 94 19 chr1 164845977 164846243 -32349189 - L1MC LINE L1 -2336 3810 3525 6 1842 277 306 14 0 chr1 164846266 164846344 -32349088 - ID4_ SINE ID -62 90 12 6 1842 216 0 0 0 chr1 164848428 164848452 -32346980 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1842 207 0 0 0 chr1 164849196 164849219 -32346213 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1842 414 85 0 0 chr1 164849521 164849580 -32345852 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1842 25 0 0 0 chr1 164850148 164850173 -32345259 + AT_rich Low_complexity Low_complexity 1 25 0 6 1842 262 312 147 19 chr1 164851071 164851228 -32344204 + MIR SINE MIR 2 178 -84 6 1842 180 211 0 0 chr1 164852677 164852715 -32342717 - L2 LINE L2 -1103 2316 2279 6 1842 357 24 0 0 chr1 164853572 164853614 -32341818 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1842 209 135 0 26 chr1 164854726 164854764 -32340668 + (TAA)n Simple_repeat Simple_repeat 1 37 0 6 1842 322 136 16 78 chr1 164854865 164854929 -32340503 + B4 SINE B4 27 86 -206 6 1842 217 109 21 21 chr1 164855062 164855109 -32340323 + GA-rich Low_complexity Low_complexity 3 49 0 6 1842 442 46 31 0 chr1 164855240 164855305 -32340127 + (CCCCCT)n Simple_repeat Simple_repeat 1 67 0 6 1842 2012 238 20 5 chr1 164855305 164855706 -32339726 + MTD LTR MaLR 13 419 0 6 1842 455 82 14 0 chr1 164855769 164855842 -32339590 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1842 190 357 31 0 chr1 164856692 164856790 -32338642 + L2 LINE L2 2182 2282 -1137 6 1842 261 231 19 0 chr1 164857236 164857288 -32338144 - ID4_ SINE ID -14 69 17 6 1842 21 36 0 0 chr1 164858011 164858039 -32337393 + AT_rich Low_complexity Low_complexity 1 28 0 6 1842 200 176 0 0 chr1 164858206 164858240 -32337192 + CT-rich Low_complexity Low_complexity 3 36 0 6 1842 288 282 172 52 chr1 164858280 164858396 -32337036 - B3A SINE B2 -68 130 1 6 1842 359 351 66 20 chr1 164858400 164858551 -32336881 - HAL1-3A_ME LINE L1 -417 2441 2284 6 1842 216 0 0 0 chr1 164858658 164858682 -32336750 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 6 1842 1522 197 192 48 chr1 164859121 164859601 -32335831 + RMER4B LTR ERVK 1 549 -36 6 1842 1212 134 10 29 chr1 164859601 164859808 -32335624 + URR1A DNA MER1_type 24 226 0 6 1842 342 217 109 67 chr1 164860317 164860510 -32334922 + Lx7 LINE L1 7215 7415 -281 6 1842 348 119 0 0 chr1 164860586 164860645 -32334787 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 6 1842 202 244 118 35 chr1 164861135 164861220 -32334212 - MER5A DNA MER1_type -97 92 1 6 1842 920 91 28 21 chr1 164861283 164861611 -32333821 + (CA)n Simple_repeat Simple_repeat 1 330 0 6 1842 299 236 148 126 chr1 164862937 164863015 -32332417 + Lx8 LINE L1 7244 7299 -174 6 1842 1928 158 17 106 chr1 164863015 164863432 -32332000 + RLTR14 LTR ERV1 3 382 0 6 1842 299 236 148 126 chr1 164863432 164863576 -32331856 + Lx8 LINE L1 7300 7471 -2 6 1842 289 159 318 0 chr1 164864296 164864359 -32331073 + 5S rRNA rRNA 8 90 -31 6 1842 228 268 0 18 chr1 164865202 164865259 -32330173 - MER46C DNA MER2_type -111 227 172 6 1842 219 345 34 17 chr1 164866501 164866619 -32328813 - MIR3 SINE MIR -1 207 88 6 1842 1474 263 137 20 chr1 164870124 164870928 -32324504 - L1MA9 LINE L1 -11 6301 5404 6 1842 591 251 132 9 chr1 164870952 164871165 -32324267 - Lx8 LINE L1 -2 7471 7233 6 1842 3450 145 80 14 chr1 164871223 164871418 -32324014 + Lx5 LINE L1 6420 6618 -432 6 1842 2821 77 32 15 chr1 164871418 164871829 -32323603 - BGLII LTR ERVK -3 418 1 6 1842 3450 145 80 14 chr1 164871829 164872219 -32323213 + Lx5 LINE L1 6619 7043 -7 6 1842 1231 256 32 106 chr1 164872235 164872734 -32322698 - Lx8 LINE L1 -235 7238 6777 6 1842 231 88 0 0 chr1 164872753 164872787 -32322645 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1842 249 330 11 11 chr1 164872800 164872895 -32322537 - Lx8 LINE L1 -971 6502 6408 6 1842 220 321 0 0 chr1 164873089 164873145 -32322287 + RSINE1 SINE B4 32 87 -78 6 1842 240 286 71 57 chr1 164873311 164873452 -32321980 + LTR50 LTR ERVL 443 585 -210 6 1842 467 318 82 65 chr1 164873452 164873663 -32321769 - B4 SINE B4 -32 260 58 6 1842 2522 206 52 19 chr1 164874710 164874862 -32320570 - RLTR18 LTR ERVK 0 616 459 6 1842 180 0 0 0 chr1 164874862 164874882 -32320550 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 1842 2522 206 52 19 chr1 164874882 164875321 -32320111 - RLTR18 LTR ERVK -158 458 5 6 1842 262 289 60 60 chr1 164875436 164875587 -32319845 + L2a LINE L2 3252 3402 -24 6 1842 464 370 98 21 chr1 164876075 164876435 -32318997 + LTR16B2 LTR ERVL 3 404 -59 6 1842 23 33 0 0 chr1 164877573 164877603 -32317829 + AT_rich Low_complexity Low_complexity 1 30 0 6 1842 294 29 0 0 chr1 164878042 164878077 -32317355 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1842 482 224 114 89 chr1 164878619 164878899 -32316533 - L1M2 LINE L1 -750 5541 5255 6 1842 302 274 78 0 chr1 164879057 164879159 -32316273 - L1M2 LINE L1 -897 5246 5137 6 1842 1390 261 67 9 chr1 164879164 164879702 -32315730 - L1M2 LINE L1 -1775 4368 3800 6 1842 683 227 168 0 chr1 164879935 164880120 -32315312 - B3 SINE B2 0 216 1 6 1842 195 220 0 0 chr1 164880136 164880186 -32315246 + (CAA)n Simple_repeat Simple_repeat 2 51 0 6 1842 218 382 30 61 chr1 164880195 164880227 -32315205 - ID_B1 SINE B4 -48 176 146 6 1842 3463 25 2 0 chr1 164880227 164880622 -32314810 + MTA_Mm LTR MaLR 1 396 0 6 1842 9583 16 3 0 chr1 164880622 164881717 -32313715 + MTA_Mm-int LTR MaLR 1 1098 0 6 1842 3435 30 2 0 chr1 164881717 164882112 -32313320 + MTA_Mm LTR MaLR 1 396 0 6 1842 346 278 0 82 chr1 164882112 164882169 -32313263 - PB1D10 SINE Alu -51 66 14 6 1842 218 382 30 61 chr1 164882169 164882208 -32313224 - ID_B1 SINE B4 -79 145 52 6 1842 786 279 51 85 chr1 164882208 164882796 -32312636 - L1M2 LINE L1 -2394 3746 3179 6 1842 324 268 57 9 chr1 164883188 164883324 -32312108 + MER74A LTR ERVL 454 599 -23 6 1842 21 0 0 0 chr1 164883842 164883863 -32311569 + AT_rich Low_complexity Low_complexity 1 21 0 6 1842 306 125 0 0 chr1 164885484 164885532 -32309900 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1842 513 270 87 7 chr1 164885533 164885671 -32309761 - RSINE1 SINE B4 -10 155 7 6 1842 319 149 13 13 chr1 164885959 164886034 -32309398 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1842 436 31 15 30 chr1 164886044 164886111 -32309321 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 6 1842 775 314 30 27 chr1 164886172 164886434 -32308998 - B4A SINE B4 -22 270 8 6 1842 352 268 12 12 chr1 164886804 164886887 -32308545 - BC1_Mm scRNA scRNA -68 84 2 6 1842 471 309 164 7 chr1 164887033 164887060 -32308372 - RSINE1 SINE B4 -2 163 137 6 1842 333 0 0 0 chr1 164887060 164887097 -32308335 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1842 471 309 164 7 chr1 164887097 164887209 -32308223 - RSINE1 SINE B4 -29 136 2 6 1843 1104 100 0 0 chr1 164889257 164889417 -32306015 + (GGAA)n Simple_repeat Simple_repeat 2 161 0 6 1843 244 323 62 106 chr1 164889747 164890013 -32305419 + L2a LINE L2 1916 2168 -1251 6 1843 315 0 0 0 chr1 164890013 164890048 -32305384 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1843 244 323 62 106 chr1 164890048 164890169 -32305263 + L2a LINE L2 2169 2286 -1133 6 1843 260 339 68 25 chr1 164890265 164890383 -32305049 + L2a LINE L2 2478 2600 -819 6 1843 7964 123 14 6 chr1 164890394 164892509 -32302923 + Lx LINE L1 4520 6650 -4 6 1843 257 288 0 0 chr1 164892627 164892686 -32302746 - ID4_ SINE ID -2 81 23 6 1843 240 361 77 34 chr1 164892905 164893114 -32302318 + L2a LINE L2 2958 3175 -251 6 1843 249 319 70 20 chr1 164893549 164893718 -32301714 + MIR SINE MIR 49 217 -51 6 1843 244 0 56 0 chr1 164894338 164894374 -32301058 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 6 1843 278 176 0 12 chr1 164895700 164895779 -32299653 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1843 420 20 0 0 chr1 164895779 164895828 -32299604 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1843 278 176 0 12 chr1 164895828 164895834 -32299598 + (TG)n Simple_repeat Simple_repeat 2 7 0 6 1843 186 369 56 46 chr1 164896471 164896579 -32298853 + L2b LINE L2 3249 3357 -18 6 1843 180 307 37 56 chr1 164896629 164896736 -32298696 - MIR SINE MIR -74 188 84 6 1843 459 0 0 0 chr1 164897240 164897291 -32298141 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1843 447 19 0 0 chr1 164897661 164897713 -32297719 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1843 658 175 0 0 chr1 164898590 164898693 -32296739 + B1_Mur3 SINE Alu 2 104 -45 6 1843 339 65 0 0 chr1 164898693 164898739 -32296693 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 6 1843 205 140 20 20 chr1 164899726 164899777 -32295655 + (CAA)n Simple_repeat Simple_repeat 3 53 0 6 1843 975 241 22 29 chr1 164900286 164900460 -32294972 + Lx8 LINE L1 6968 7146 -327 6 1843 5347 53 0 0 chr1 164900460 164901115 -32294317 + L1Md_F2 LINE L1 5916 6570 -12 6 1843 975 241 22 29 chr1 164901115 164901213 -32294219 + Lx8 LINE L1 7147 7238 -235 6 1843 692 141 8 0 chr1 164901213 164901334 -32294098 + (TC)n Simple_repeat Simple_repeat 2 123 0 6 1843 2933 43 0 3 chr1 164901334 164901680 -32293752 + IAPLTR4 LTR ERVK 1 345 0 6 1843 502 183 17 34 chr1 164901680 164901799 -32293633 + IAPLTR3-int LTR ERVK 1 117 -6704 6 1843 403 200 8 48 chr1 164901799 164901925 -32293507 + IAPLTR3-int LTR ERVK 834 954 -5867 6 1843 368 129 0 141 chr1 164901899 164902034 -32293398 + MMERVK10C-int LTR ERVK 837 952 -6629 6 1843 1142 202 102 77 chr1 164902146 164902231 -32293201 + ETnERV3-int LTR ERVK 251 326 -5080 6 1843 225 0 0 0 chr1 164902231 164902256 -32293176 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1843 1142 202 102 77 chr1 164902256 164902534 -32292898 + ETnERV3-int LTR ERVK 327 623 -4783 6 1843 426 169 93 0 chr1 164902679 164902797 -32292635 + ETnERV3-int LTR ERVK 1721 1849 -5557 6 1843 6692 102 56 4 chr1 164902911 164904290 -32291142 + ETnERV3-int LTR ERVK 2735 4271 -3135 6 1843 415 179 18 36 chr1 164904295 164904405 -32291027 + MMETn-int LTR ERVK 2357 2464 -2380 6 1843 794 76 17 8 chr1 164904431 164904550 -32290882 + ETnERV3-int LTR ERVK 4530 4649 -2932 6 1843 5988 245 50 38 chr1 164904700 164907194 -32288238 + ETnERV3-int LTR ERVK 5068 7297 -383 6 1843 2825 58 0 3 chr1 164907197 164907543 -32287889 + IAPLTR4 LTR ERVK 1 345 0 6 1843 1137 128 0 0 chr1 164907552 164907732 -32287700 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1843 1188 275 11 26 chr1 164907732 164908079 -32287353 - Lx6 LINE L1 -31 7429 7088 6 1843 487 188 199 68 chr1 164908098 164908177 -32287255 + Lx8 LINE L1 7241 7345 -128 6 1843 657 0 0 0 chr1 164908177 164908250 -32287182 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 6 1843 487 188 199 68 chr1 164908250 164908376 -32287056 + Lx8 LINE L1 7346 7472 -1 6 1843 690 47 0 0 chr1 164908882 164908968 -32286464 + (TTTTC)n Simple_repeat Simple_repeat 4 89 0 6 1843 2277 92 0 41 chr1 164908991 164909332 -32286100 - Lx LINE L1 0 6654 6328 6 1843 544 348 115 56 chr1 164909386 164909830 -32285602 - MLT1D LTR MaLR 0 505 36 6 1843 201 138 0 0 chr1 164910039 164910068 -32285364 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 6 1843 618 263 38 70 chr1 164910069 164910282 -32285150 - ID_B1 SINE B4 -14 210 5 6 1843 276 172 0 0 chr1 164910331 164910389 -32285043 + RCHARR1 DNA MER1_type 789 846 -128 6 1843 333 131 234 0 chr1 164910429 164910536 -32284896 + Lx9 LINE L1 7506 7637 -7 6 1843 294 344 119 3 chr1 164910956 164911242 -32284190 - L1MA5 LINE L1 -18 6282 5964 6 1843 367 248 165 18 chr1 164911417 164911497 -32283935 - L1M2 LINE L1 -1073 5070 4967 6 1843 465 19 0 0 chr1 164911497 164911551 -32283881 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1843 306 0 0 0 chr1 164911551 164911584 -32283848 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1843 279 0 0 0 chr1 164911584 164911614 -32283818 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 1843 367 248 165 18 chr1 164911614 164911695 -32283737 - L1M2 LINE L1 -1177 4966 4885 6 1843 433 231 77 0 chr1 164911768 164911872 -32283560 + PB1D9 SINE Alu 1 112 -8 7 1843 186 43 0 0 chr1 164911872 164911895 -32283537 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 7 1843 1125 272 15 63 chr1 164911939 164912217 -32283215 + L1M2 LINE L1 4413 4689 -1454 7 1843 198 0 0 0 chr1 164912217 164912239 -32283193 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 7 1843 1125 272 15 63 chr1 164912239 164912438 -32282994 + L1M2 LINE L1 4690 4867 -1276 7 1843 513 281 74 60 chr1 164912560 164912829 -32282603 - B4A SINE B4 -18 274 2 7 1843 423 322 13 92 chr1 164913794 164914023 -32281409 - MER2 DNA MER2_type -57 288 78 7 1843 187 244 26 0 chr1 164914081 164914159 -32281273 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 1843 243 0 0 0 chr1 164915085 164915112 -32280320 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1843 233 323 0 0 chr1 164917296 164917372 -32278060 - L2a LINE L2 -9 3417 3291 7 1843 1601 227 35 22 chr1 164918932 164919301 -32276131 - Lx5 LINE L1 -56 6994 6621 7 1843 2285 195 16 9 chr1 164919315 164919749 -32275683 + Lx5 LINE L1 6144 6580 -470 7 1843 6880 79 30 6 chr1 164920442 164921398 -32274034 - Lx3_Mus LINE L1 -5 7004 6026 7 1843 1435 139 22 119 chr1 164921423 164921741 -32273691 + ORR1A4 LTR MaLR 1 287 -42 7 1843 958 67 0 0 chr1 164921741 164921860 -32273572 + B1_Mus1 SINE Alu 21 139 -9 7 1843 387 0 0 0 chr1 164921860 164921903 -32273529 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1843 396 94 0 0 chr1 164921903 164921956 -32273476 + ORR1A4 LTR MaLR 342 394 0 7 1843 418 302 41 41 chr1 164922048 164922290 -32273142 - RLTR42-int LTR ERVK -4122 1400 1159 7 1843 428 291 203 40 chr1 164922470 164922769 -32272663 + MLT1B LTR MaLR 3 349 -41 7 1843 927 162 125 10 chr1 164923361 164923561 -32271871 + URR1A DNA MER1_type 2 224 -2 7 1843 24 0 0 0 chr1 164924808 164924832 -32270600 + AT_rich Low_complexity Low_complexity 1 24 0 7 1843 8114 102 7 127 chr1 164925424 164927424 -32268008 - L1Md_F2 LINE L1 -13 6569 5178 7 1843 4290 183 30 14 chr1 164927424 164928237 -32267195 - Lx3C LINE L1 -11 6965 6140 7 1843 9397 153 23 12 chr1 164928237 164929584 -32265848 - L1_Mur2 LINE L1 -584 5293 3926 7 1843 5273 75 14 6 chr1 164929584 164930293 -32265139 - L1Md_F2 LINE L1 -12 6570 5856 7 1843 9397 153 23 12 chr1 164930293 164930712 -32264720 - L1_Mur2 LINE L1 -1952 3925 3508 7 1843 776 336 12 29 chr1 164933036 164933119 -32262313 + B4A SINE B4 1 84 -208 7 1843 342 0 0 0 chr1 164933119 164933157 -32262275 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1843 776 336 12 29 chr1 164933157 164933318 -32262114 + B4A SINE B4 85 241 -51 7 1843 201 303 0 15 chr1 164933366 164933433 -32261999 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1843 240 282 97 74 chr1 164933615 164933791 -32261641 + MIRb SINE MIR 41 220 -48 7 1843 894 186 51 83 chr1 164933956 164934048 -32261384 - L1_Mur3 LINE L1 -2444 3436 3364 7 1843 468 99 0 0 chr1 164934048 164934119 -32261313 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1843 894 193 50 86 chr1 164934119 164934455 -32260977 - L1_Mur3 LINE L1 -2517 3363 3030 7 1843 181 268 0 0 chr1 164935873 164935914 -32259518 + L3 LINE CR1 2998 3038 -1451 7 1843 276 247 112 10 chr1 164936356 164936454 -32258978 + MER104 DNA Tc2 35 142 -39 7 1843 1086 315 30 53 chr1 164936822 164937221 -32258211 - MT2A LTR ERVL -134 399 10 7 1843 440 125 42 0 chr1 164937787 164937883 -32257549 + (TA)n Simple_repeat Simple_repeat 2 101 0 7 1843 472 300 77 92 chr1 164938288 164938388 -32257044 - L1MB5 LINE L1 0 6174 6077 7 1843 2859 98 0 2 chr1 164938388 164938785 -32256647 - MTA_Mm LTR MaLR 0 396 1 7 1843 472 300 77 92 chr1 164938785 164939128 -32256304 - L1MB5 LINE L1 -98 6076 5738 7 1843 25 0 0 0 chr1 164939129 164939154 -32256278 + AT_rich Low_complexity Low_complexity 1 25 0 7 1843 708 275 16 94 chr1 164939846 164940028 -32255404 - Lx5 LINE L1 -2 7048 6873 7 1843 636 14 0 0 chr1 164940028 164940101 -32255331 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1843 1110 58 14 0 chr1 164940104 164940242 -32255190 - B1_Mm SINE Alu -7 140 1 7 1843 708 275 16 94 chr1 164940242 164940300 -32255132 - Lx5 LINE L1 -178 6872 6823 7 1843 462 211 178 8 chr1 164940300 164940381 -32255051 - RLTR20B1 LTR ERVK 0 563 472 7 1843 387 0 0 0 chr1 164940381 164940424 -32255008 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1843 905 228 179 41 chr1 164940424 164940703 -32254729 - RLTR20B1 LTR ERVK -92 471 53 7 1843 5125 172 31 10 chr1 164940704 164941846 -32253586 - Lx5 LINE L1 -346 6704 5535 7 1843 7934 30 2 0 chr1 164941846 164942991 -32252441 - L1Md_T LINE L1 0 6582 5436 7 1843 37563 29 2 6 chr1 164942988 164948966 -32246466 - L1Md_T LINE L1 -188 6394 450 7 1843 7430 173 49 28 chr1 164948968 164950649 -32244783 - Lx5 LINE L1 -330 5547 3832 7 1843 6553 88 16 66 chr1 164950642 164952054 -32243378 - L1_Mus3 LINE L1 -4 6634 5293 7 1843 4245 63 29 19 chr1 164952059 164952472 -32242960 - MusHAL1 LINE L1 -11 2701 2283 7 1843 282 29 0 0 chr1 164952472 164952507 -32242925 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1843 4245 63 29 19 chr1 164952507 164952723 -32242709 - MusHAL1 LINE L1 -430 2282 2066 7 1843 2499 208 46 11 chr1 164953560 164954099 -32241333 + Lx5 LINE L1 6490 7047 -3 7 1843 358 259 35 13 chr1 164955231 164955341 -32240091 - B1F SINE Alu -73 76 15 7 1843 294 98 0 0 chr1 164955625 164955676 -32239756 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1843 446 0 19 0 chr1 164955676 164955729 -32239703 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1843 759 252 28 14 chr1 164955775 164955988 -32239444 - B3 SINE B2 0 216 1 7 1843 187 316 82 41 chr1 164956124 164956246 -32239186 + L2a LINE L2 3300 3426 0 7 1843 642 26 0 0 chr1 164956352 164956428 -32239004 + (GA)n Simple_repeat Simple_repeat 2 77 0 7 1843 580 167 296 0 chr1 164957080 164957212 -32238220 - MTC LTR MaLR -52 369 199 7 1843 7518 54 5 2 chr1 164957234 164958396 -32237036 - L1Md_F2 LINE L1 -3 6579 5414 7 1843 7075 70 43 0 chr1 164958394 164959410 -32236022 + L1_Mm LINE L1 3573 4632 -1251 7 1843 1801 255 68 51 chr1 164959589 164960911 -32234521 + Lx5 LINE L1 5760 7006 -44 7 1843 255 364 6 41 chr1 164961138 164961310 -32234122 - RMER4B LTR ERVK -398 187 22 7 1843 5110 119 6 6 chr1 164961573 164962412 -32233020 + L1_Mm LINE L1 4476 5314 -569 7 1843 587 283 16 11 chr1 164962603 164962792 -32232640 + Lx7 LINE L1 5706 5895 -1801 7 1843 604 117 0 10 chr1 164963006 164963110 -32232322 - L1_Mur1 LINE L1 -3465 2412 2310 7 1843 5923 132 1 0 chr1 164963101 164964049 -32231383 - L1_Mus3 LINE L1 -97 5786 4838 7 1843 5215 102 51 11 chr1 164964049 164964859 -32230573 + L1_Mus3 LINE L1 5796 6637 -1 7 1843 234 81 0 0 chr1 164964871 164964908 -32230524 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1843 3779 178 32 1 chr1 164964911 164965158 -32230274 - L1_Mur1 LINE L1 -3559 2327 2057 7 1843 405 0 0 0 chr1 164965158 164965203 -32230229 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1843 3779 178 32 1 chr1 164965203 164965760 -32229672 - L1_Mur1 LINE L1 -3830 2056 1498 7 1843 339 336 74 20 chr1 164966436 164966585 -32228847 - HAL1-3A_ME LINE L1 -420 2438 2282 7 1843 609 142 0 0 chr1 164966716 164966857 -32228575 + (TC)n Simple_repeat Simple_repeat 2 142 0 7 1843 307 207 45 11 chr1 164967417 164967505 -32227927 + CT-rich Low_complexity Low_complexity 2 92 0 7 1843 1040 127 0 0 chr1 164968708 164968866 -32226566 + URR1B DNA MER1_type 68 225 0 7 1843 189 0 0 0 chr1 164969518 164969539 -32225893 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1843 264 282 220 0 chr1 164969592 164969801 -32225631 + L1MA8 LINE L1 5708 5962 -329 7 1843 183 80 0 0 chr1 164970098 164970123 -32225309 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 1843 201 196 22 0 chr1 164970178 164970224 -32225208 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 7 1843 366 23 0 0 chr1 164970291 164970334 -32225098 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1843 24 0 0 0 chr1 164970673 164970697 -32224735 + AT_rich Low_complexity Low_complexity 1 24 0 7 1843 191 310 26 90 chr1 164970764 164970842 -32224590 + MIR SINE MIR 74 146 -116 7 1843 529 219 79 37 chr1 164970891 164971081 -32224351 - L1_Mur3 LINE L1 -482 5398 5201 7 1843 264 219 0 0 chr1 164971126 164971190 -32224242 + L1_Mur1 LINE L1 690 753 -6231 7 1843 9193 141 32 18 chr1 164971322 164973489 -32221943 + L1_Mur1 LINE L1 691 2986 -2900 7 1843 1749 127 22 0 chr1 164973509 164973777 -32221655 + ORR1A3 LTR MaLR 53 326 0 7 1843 424 299 101 24 chr1 164974632 164974879 -32220553 + MER63C DNA AcHobo 97 362 -568 7 1843 523 315 27 0 chr1 164975133 164975279 -32220153 - MER5A DNA MER1_type -36 153 4 7 1843 26295 134 9 6 chr1 164978463 164983901 -32211531 - L1_Mus3 LINE L1 -12 6626 1203 7 1843 234 0 0 0 chr1 164983901 164983927 -32211505 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1843 3026 207 12 74 chr1 164983927 164984593 -32210839 - L1_Mus3 LINE L1 -5455 1202 562 7 1843 230 240 83 0 chr1 164984595 164984691 -32210741 - RMER1B Other Other -4 1062 959 7 1843 278 283 0 0 chr1 164986071 164986131 -32209301 + MLT1A1-int LTR MaLR 841 900 -487 7 1843 207 0 0 0 chr1 164986768 164986791 -32208641 + (CATG)n Simple_repeat Simple_repeat 2 24 0 7 1843 702 218 124 22 chr1 164987372 164987550 -32207882 - B3A SINE B2 -1 197 2 7 1843 863 146 53 53 chr1 164987594 164987782 -32207650 + B2_Mm2 SINE B2 2 189 -6 7 1843 404 266 169 123 chr1 164989285 164989344 -32206088 + MLT1A1 LTR MaLR 4 66 -342 7 1843 534 43 0 0 chr1 164989344 164989413 -32206019 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1843 493 321 98 20 chr1 164989420 164989674 -32205758 - B4A SINE B4 -18 274 1 7 1843 404 266 169 123 chr1 164989674 164989979 -32205453 + MLT1A1 LTR MaLR 75 393 -15 7 1843 888 274 97 53 chr1 164989982 164990395 -32205037 + MER45B DNA Tip100 546 976 -64 7 1843 414 101 0 0 chr1 164991239 164991308 -32204124 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 7 1843 297 333 0 0 chr1 164991318 164991411 -32204021 + Lx8 LINE L1 7135 7227 -246 7 1843 274 262 123 12 chr1 164992045 164992126 -32203306 - PB1D10 SINE Alu -10 107 18 7 1843 1075 71 13 0 chr1 164992955 164993109 -32202323 + (TA)n Simple_repeat Simple_repeat 2 157 0 7 1843 688 278 136 37 chr1 164993126 164994702 -32200730 - L1MEc LINE L1 -2994 3325 1615 7 1843 205 321 0 0 chr1 164995040 164995093 -32200339 + polypyrimidine Low_complexity Low_complexity 4 56 0 7 1843 308 213 16 0 chr1 164995101 164995162 -32200270 - PB1D10 SINE Alu -27 90 29 7 1843 182 128 26 0 chr1 164995303 164995342 -32200090 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1843 369 316 0 26 chr1 164995347 164995464 -32199968 - PB1D10 SINE Alu -1 116 3 8 1843 272 325 58 10 chr1 164995475 164995680 -32199752 - L1MEc LINE L1 -5576 824 610 7 1843 800 157 176 22 chr1 164996349 164996531 -32198901 + URR1B DNA MER1_type 1 210 -15 8 1843 194 250 61 30 chr1 164996556 164996622 -32198810 + L2 LINE L2 1469 1536 -1883 8 1843 961 126 21 23 chr1 164996935 164997106 -32198326 + B2_Mm2 SINE B2 27 195 0 8 1843 11900 25 8 1 chr1 164997171 164999304 -32196128 - L1Md_A LINE L1 -1 6581 4428 8 1843 271 276 0 0 chr1 164999742 164999800 -32195632 - ORR1D2 LTR MaLR -55 315 258 8 1843 867 266 3 80 chr1 165001396 165001682 -32193750 + RLTR18B LTR ERVK 249 512 0 1 1843 23 33 0 0 chr1 165001691 165001721 -32193711 + AT_rich Low_complexity Low_complexity 1 30 0 2 1843 813 356 59 125 chr1 165002604 165003634 -32191798 - MLT1A1-int LTR MaLR -772 963 2 3 1843 253 297 25 59 chr1 165003636 165003754 -32191678 - MLT1A1 LTR MaLR 0 408 295 3 1843 646 284 38 129 chr1 165004023 165004440 -32190992 + MTE2a LTR MaLR 1 379 0 4 1843 426 39 0 0 chr1 165004917 165004969 -32190463 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1843 1137 76 0 0 chr1 165005085 165005230 -32190202 - B1_Mm SINE Alu -2 145 1 6 1843 230 283 50 80 chr1 165005995 165006095 -32189337 + MamRep1161 DNA TcMar 38 134 -823 7 1843 388 297 152 9 chr1 165007163 165007374 -32188058 + L1M3 LINE L1 4861 5101 -1039 8 1843 941 266 161 6 chr1 165007778 165008107 -32187325 + Lx7 LINE L1 7010 7389 -307 9 1843 390 42 0 0 chr1 165008131 165008179 -32187253 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1843 233 173 96 0 chr1 165008196 165008248 -32187184 + Lx7 LINE L1 7628 7684 -12 9 1843 399 307 60 32 chr1 165008391 165008576 -32186856 + MIR SINE MIR 26 215 -47 1 1843 614 95 11 0 chr1 165008669 165008764 -32186668 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 1843 215 278 0 0 chr1 165008786 165008840 -32186592 + CT-rich Low_complexity Low_complexity 3 56 0 1 1843 288 0 0 0 chr1 165009783 165009815 -32185617 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1843 236 140 0 39 chr1 165010285 165010337 -32185095 + (TCTCTG)n Simple_repeat Simple_repeat 2 51 0 1 1843 241 286 0 0 chr1 165010337 165010393 -32185039 + C-rich Low_complexity Low_complexity 4 59 0 1 1843 398 210 78 0 chr1 165010396 165010563 -32184869 + CT-rich Low_complexity Low_complexity 1 180 0 1 1843 219 267 0 0 chr1 165010561 165010636 -32184796 + C-rich Low_complexity Low_complexity 1 75 0 1 1843 449 333 81 54 chr1 165010844 165011104 -32184328 - MLT1E1A LTR MaLR -77 603 337 1 1843 252 200 57 0 chr1 165011164 165011234 -32184198 - MLT1E1A LTR MaLR -461 219 146 1 1843 399 68 0 0 chr1 165011813 165011872 -32183560 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 1843 345 314 78 33 chr1 165012300 165012606 -32182826 - L1M7 LINE L1 -4551 1667 1348 2 1843 5773 51 0 1 chr1 165013030 165013738 -32181694 - L1Md_F2 LINE L1 -15 6567 5861 2 1843 245 345 10 25 chr1 165014067 165014269 -32181163 - L1MA4A LINE L1 -379 5924 5726 2 1843 356 278 37 9 chr1 165014779 165014888 -32180544 - PB1D10 SINE Alu -5 112 1 2 1843 606 345 118 63 chr1 165015152 165015533 -32179899 + MLT2B1 LTR ERVL 3 404 -116 2 1843 1572 269 40 36 chr1 165016279 165016785 -32178647 - RLTR20B3 LTR ERVK -59 518 11 2 1843 245 320 48 0 chr1 165017058 165017161 -32178271 - L1M3e LINE L1 -6656 374 267 2 1843 473 96 14 14 chr1 165017334 165017408 -32178024 + MTA_Mm LTR MaLR 18 91 -305 2 1843 2218 100 19 3 chr1 165017482 165017794 -32177638 - ORR1A3 LTR MaLR -8 318 2 2 1843 22 0 0 0 chr1 165017836 165017858 -32177574 + AT_rich Low_complexity Low_complexity 1 22 0 3 1843 253 156 10 40 chr1 165017868 165017968 -32177464 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 3 1843 333 306 0 20 chr1 165017997 165018097 -32177335 - PB1D10 SINE Alu -14 103 6 3 1843 476 282 236 8 chr1 165018263 165018814 -32176618 - L1M4 LINE L1 -4697 2405 1622 3 1843 788 338 79 0 chr1 165018956 165019184 -32176248 + B4A SINE B4 47 292 0 3 1843 253 320 55 23 chr1 165019394 165019522 -32175910 - L1M4 LINE L1 -5632 1272 1141 3 1843 354 219 0 0 chr1 165019522 165019627 -32175805 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 1844 765 314 85 19 chr1 165019658 165020223 -32175209 - L1M4 LINE L1 -5790 1114 513 3 1844 327 49 0 0 chr1 165022220 165022261 -32173171 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 3 1844 837 218 168 18 chr1 165023592 165023877 -32171555 - Lx9 LINE L1 -34 7610 7283 3 1844 1140 262 117 28 chr1 165023886 165024349 -32171083 + RLTR12B LTR ERVK 11 514 -14 3 1844 472 219 10 0 chr1 165024376 165024472 -32170960 - Lx9 LINE L1 -369 7275 7179 3 1844 1334 215 10 5 chr1 165024474 165024791 -32170641 + Lx9 LINE L1 6782 7163 -481 3 1844 374 169 0 11 chr1 165026074 165026164 -32169268 + CT-rich Low_complexity Low_complexity 2 90 0 3 1844 53 90 0 0 chr1 165026377 165026521 -32168911 + AT_rich Low_complexity Low_complexity 1 144 0 4 1844 1800 50 0 0 chr1 165027160 165027380 -32168052 + L1Md_T LINE L1 6363 6582 0 4 1844 359 310 98 81 chr1 165027397 165027692 -32167740 - L2a LINE L2 -95 3331 3032 4 1844 4034 197 45 10 chr1 165027711 165028647 -32166785 - Lx2B LINE L1 -7 6993 6025 4 1844 248 143 0 0 chr1 165028858 165028907 -32166525 + RMER4B LTR ERVK 17 65 -520 4 1844 5415 146 14 2 chr1 165028908 165029875 -32165557 - L1_Mur2 LINE L1 -561 5316 4338 4 1844 5982 127 47 11 chr1 165029880 165031156 -32164276 + Lx LINE L1 5336 6652 -2 4 1844 2137 155 16 18 chr1 165031162 165031651 -32163781 + RMER4B LTR ERVK 53 585 0 4 1844 404 241 22 29 chr1 165032233 165032345 -32163087 + B1F2 SINE Alu 12 119 -1 4 1844 268 279 267 15 chr1 165032918 165033184 -32162248 + LTR48 LTR ERV1 154 486 -301 4 1844 315 244 26 0 chr1 165033293 165033371 -32162061 + LTR48 LTR ERV1 706 785 -2 4 1844 180 0 0 0 chr1 165033581 165033601 -32161831 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1844 300 250 67 9 chr1 165034024 165034129 -32161303 + MER121 Unknown Unknown 113 223 -189 5 1844 495 300 54 42 chr1 165034238 165034405 -32161027 - ID_B1 SINE B4 -1 223 55 5 1844 446 47 0 30 chr1 165035567 165035633 -32159799 + (TCC)n Simple_repeat Simple_repeat 3 66 0 5 1844 1790 98 7 0 chr1 165035633 165035910 -32159522 - Lx3_Mus LINE L1 -812 6197 5919 5 1844 7532 80 1 51 chr1 165035909 165036933 -32158499 + Lx3A LINE L1 4774 5775 -1206 5 1844 218 200 22 0 chr1 165036933 165036978 -32158454 + B4 SINE B4 2 47 -245 5 1844 7532 80 1 51 chr1 165036978 165037126 -32158306 + Lx3A LINE L1 5776 5921 -1060 5 1844 732 123 0 0 chr1 165037623 165037737 -32157695 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 1844 2404 78 80 9 chr1 165037739 165038089 -32157343 - L1Md_F2 LINE L1 -13 6569 6195 5 1844 202 295 33 0 chr1 165039016 165039077 -32156355 - MIR SINE MIR -60 148 86 5 1844 1373 273 199 6 chr1 165040035 165040548 -32154884 - Charlie1 DNA MER1_type -464 2317 1706 5 1844 282 348 22 11 chr1 165040679 165040769 -32154663 - Charlie1 DNA MER1_type -2685 96 6 5 1844 1313 72 44 0 chr1 165040951 165041131 -32154301 - B2_Mm1t SINE B2 -4 189 2 6 1844 207 0 0 0 chr1 165041139 165041162 -32154270 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1844 940 73 97 0 chr1 165041162 165041286 -32154146 - B1_Mm SINE Alu -10 137 2 6 1844 823 300 75 46 chr1 165041350 165041696 -32153736 - MTD LTR MaLR -59 360 5 6 1844 484 286 58 4 chr1 165042282 165042507 -32152925 - L1MA4A LINE L1 -373 5930 5694 6 1844 240 403 10 108 chr1 165042626 165042932 -32152500 + MER21B LTR ERV1 24 299 -564 6 1844 852 170 37 0 chr1 165043258 165043393 -32152039 + B1_Mur4 SINE Alu 2 141 -9 6 1844 601 13 26 0 chr1 165043393 165043471 -32151961 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1844 235 261 122 61 chr1 165043956 165044103 -32151329 - L2b LINE L2 0 3375 3220 6 1844 3413 65 2 0 chr1 165045186 165045617 -32149815 - L1_Mus1 LINE L1 -1 6566 6135 6 1844 608 317 119 12 chr1 165045732 165046188 -32149244 - L1M5 LINE L1 -350 5812 5314 7 1844 212 136 67 11 chr1 165046206 165046295 -32149137 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1844 636 188 0 0 chr1 165048621 165048749 -32146683 + GA-rich Low_complexity Low_complexity 3 130 0 7 1844 7224 161 28 15 chr1 165049720 165051541 -32143891 - Lx5 LINE L1 -11 7039 5180 7 1844 3996 44 2 0 chr1 165051541 165052020 -32143412 - L1Md_F2 LINE L1 -12 6570 6091 7 1844 4852 138 14 23 chr1 165052020 165052229 -32143203 - Lx5 LINE L1 -698 5179 4982 7 1844 419 311 33 0 chr1 165052230 165052381 -32143051 + Lx8 LINE L1 6298 6453 -1020 7 1844 509 260 66 28 chr1 165052384 165052566 -32142866 - RLTR9E LTR ERVK -1 408 220 7 1844 273 200 27 41 chr1 165052647 165052720 -32142712 - RLTR9E LTR ERVK -296 72 1 7 1844 1233 310 36 24 chr1 165052727 165053230 -32142202 + Lx8 LINE L1 6460 6968 -505 7 1844 1138 36 21 0 chr1 165053678 165053818 -32141614 + B1_Mur4 SINE Alu 1 143 -7 7 1844 501 17 0 0 chr1 165053835 165053893 -32141539 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 7 1844 407 316 6 26 chr1 165054236 165054392 -32141040 - MER115 DNA Tip100 -46 647 495 7 1844 339 315 184 9 chr1 165055725 165055934 -32139498 + MIRb SINE MIR 2 247 -21 8 1844 212 244 0 0 chr1 165056028 165056073 -32139359 + CT-rich Low_complexity Low_complexity 2 46 0 8 1844 360 0 0 0 chr1 165056084 165056124 -32139308 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1844 246 355 37 82 chr1 165057061 165057306 -32138126 + MIRb SINE MIR 28 261 -7 8 1844 234 372 26 17 chr1 165057341 165057456 -32137976 - MIRm SINE MIR -3 273 158 8 1844 6082 194 27 13 chr1 165057560 165058812 -32136620 - Lx9 LINE L1 0 7644 6375 8 1844 266 286 76 0 chr1 165059015 165059120 -32136312 - L2a LINE L2 -9 3417 3305 8 1844 250 314 39 61 chr1 165060576 165060756 -32134676 - L2c LINE L2 -40 3347 3172 8 1844 2305 42 7 0 chr1 165060843 165061127 -32134305 + L1_Mus1 LINE L1 6282 6567 0 8 1844 192 77 0 0 chr1 165061132 165061158 -32134274 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1844 23 0 0 0 chr1 165061223 165061246 -32134186 + AT_rich Low_complexity Low_complexity 1 23 0 9 1844 483 87 0 0 chr1 165061273 165061342 -32134090 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1844 456 19 0 0 chr1 165064106 165064159 -32131273 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 9 1844 936 244 23 116 chr1 165065011 165065312 -32130120 + B4A SINE B4 2 274 -18 9 1844 267 31 0 0 chr1 165065319 165065351 -32130081 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1844 299 230 11 0 chr1 165065352 165065439 -32129993 + CT-rich Low_complexity Low_complexity 3 90 0 9 1844 759 22 0 0 chr1 165065458 165065547 -32129885 + (TC)n Simple_repeat Simple_repeat 2 90 0 9 1844 435 336 27 27 chr1 165065709 165065856 -32129576 - RSINE1 SINE B4 -5 160 14 9 1844 216 320 84 37 chr1 165066058 165066165 -32129267 + MIRm SINE MIR 165 276 0 9 1844 197 324 149 0 chr1 165066396 165066543 -32128889 + MIRm SINE MIR 35 205 -63 9 1844 192 315 0 99 chr1 165066638 165066719 -32128713 + L2c LINE L2 3284 3356 -31 1 1844 192 220 152 0 chr1 165066771 165066830 -32128602 + L4 LINE RTE 1080 1147 -882 1 1844 1255 52 12 0 chr1 165066900 165067072 -32128360 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 1 1844 287 146 18 0 chr1 165067072 165067127 -32128305 + GA-rich Low_complexity Low_complexity 1 56 0 1 1844 450 103 0 0 chr1 165067779 165067857 -32127575 + (TATG)n Simple_repeat Simple_repeat 2 79 0 1 1844 2344 277 78 41 chr1 165069310 165069560 -32125872 - Lx8 LINE L1 -381 7092 6805 1 1844 990 155 5 48 chr1 165069560 165069770 -32125662 + Lx7 LINE L1 7496 7696 0 1 1844 2344 277 78 41 chr1 165069770 165070521 -32124911 - Lx8 LINE L1 -669 6804 6055 1 1844 264 336 149 7 chr1 165071344 165071485 -32123947 + RSINE1 SINE B4 1 161 -4 1 1844 320 208 25 25 chr1 165071833 165071912 -32123520 - MTE2b LTR MaLR -14 365 287 1 1844 367 253 129 31 chr1 165071930 165072093 -32123339 - Lx8 LINE L1 -2 7471 7293 1 1844 629 158 94 44 chr1 165072129 165072288 -32123144 - Lx8 LINE L1 -315 7158 6992 1 1844 25 75 0 0 chr1 165072304 165072357 -32123075 + AT_rich Low_complexity Low_complexity 1 53 0 1 1844 719 250 20 0 chr1 165072409 165072557 -32122875 + MTC LTR MaLR 271 421 0 1 1844 735 247 62 68 chr1 165072589 165072958 -32122474 - Lx9 LINE L1 -4 7640 7274 1 1844 664 228 34 0 chr1 165073025 165073174 -32122258 - Lx8 LINE L1 -929 6544 6391 1 1844 1787 149 119 9 chr1 165073178 165073496 -32121936 - ORR1C2 LTR MaLR 0 384 32 1 1844 358 227 0 13 chr1 165073513 165073589 -32121843 - Lx8 LINE L1 -1112 6361 6287 1 1844 2438 131 57 66 chr1 165073599 165074039 -32121393 + RLTR41 LTR ERV1 11 446 0 1 1844 375 304 42 47 chr1 165074044 165074258 -32121174 - Lx8 LINE L1 -1192 6281 6069 1 1844 476 308 44 63 chr1 165074436 165074522 -32120910 + CYRA11_Mm Unknown Y-chromosome 81 388 -227 1 1844 1298 170 4 18 chr1 165074522 165074750 -32120682 - URR1B DNA MER1_type 0 225 1 1 1844 6696 56 60 6 chr1 165074965 165075896 -32119536 + L1_Mus1 LINE L1 5587 6567 0 1 1844 194 62 31 0 chr1 165075901 165075933 -32119499 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 1844 279 79 0 0 chr1 165076196 165076234 -32119198 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 1 1844 189 366 162 42 chr1 165076614 165076973 -32118459 - L2a LINE L2 -25 3401 3000 1 1844 225 316 96 48 chr1 165076984 165077193 -32118239 - L2a LINE L2 -459 2960 2742 1 1844 270 338 49 12 chr1 165077735 165077816 -32117616 - MLT1I LTR MaLR -279 132 49 1 1844 22 35 0 0 chr1 165078044 165078073 -32117359 + AT_rich Low_complexity Low_complexity 1 29 0 1 1844 6584 78 50 6 chr1 165078175 165079091 -32116341 - Lx3_Mus LINE L1 0 7009 6053 1 1844 1480 241 87 60 chr1 165079143 165079673 -32115759 - Lx8 LINE L1 -4 7469 6926 1 1844 453 36 0 0 chr1 165079677 165079732 -32115700 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1844 180 0 0 0 chr1 165079884 165079904 -32115528 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1844 553 251 42 5 chr1 165080232 165080424 -32115008 + L1MA6 LINE L1 6075 6273 -27 1 1844 228 295 0 0 chr1 165081198 165081259 -32114173 + GA-rich Low_complexity Low_complexity 2 62 0 1 1844 230 219 0 0 chr1 165081204 165081245 -32114187 + polypurine Low_complexity Low_complexity 4 44 0 1 1844 255 61 0 0 chr1 165081293 165081326 -32114106 + (TATG)n Simple_repeat Simple_repeat 4 36 0 1 1844 1093 287 65 12 chr1 165081438 165081932 -32113500 + L1MA6 LINE L1 5717 6236 -64 1 1844 218 333 162 0 chr1 165082021 165082132 -32113300 - MIR SINE MIR -19 243 115 1 1844 25 0 0 0 chr1 165082873 165082898 -32112534 + AT_rich Low_complexity Low_complexity 1 25 0 1 1844 28 61 0 0 chr1 165083404 165083453 -32111979 + AT_rich Low_complexity Low_complexity 1 49 0 1 1844 423 296 87 14 chr1 165083937 165084156 -32111276 + L1ME4a LINE L1 5648 5882 -242 1 1844 180 0 0 0 chr1 165084348 165084368 -32111064 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1844 222 37 0 0 chr1 165084817 165084844 -32110588 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1844 239 246 14 0 chr1 165084994 165085063 -32110369 + L1M1 LINE L1 5789 5858 -442 1 1844 229 282 68 68 chr1 165086032 165086150 -32109282 + L2c LINE L2 2537 2654 -765 1 1844 228 253 179 0 chr1 165086738 165086833 -32108599 - L1MA6 LINE L1 -49 6251 6140 1 1844 243 125 0 0 chr1 165086844 165086884 -32108548 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1844 1916 103 98 17 chr1 165087743 165088038 -32107394 - Lx LINE L1 -5 6649 6331 1 1844 208 374 89 39 chr1 165088342 165088623 -32106809 + L2c LINE L2 3090 3384 -3 1 1844 504 132 0 0 chr1 165089050 165089133 -32106299 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1844 219 244 0 0 chr1 165089160 165089201 -32106231 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1844 258 284 0 11 chr1 165089584 165089673 -32105759 - Tigger7 DNA MER2_type -105 2386 2299 1 1844 186 354 36 48 chr1 165090171 165090337 -32105095 + L2a LINE L2 3263 3426 0 1 1844 7531 2 0 0 chr1 165090949 165091811 -32103621 + L1Md_A LINE L1 5755 6582 0 1 1844 229 317 155 41 chr1 165092966 165093160 -32102272 + MIRb SINE MIR 35 250 -18 1 1844 519 333 80 10 chr1 165093399 165093599 -32101833 + B4A SINE B4 1 214 -78 1 1844 239 93 0 23 chr1 165093599 165093643 -32101789 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 1844 629 278 114 47 chr1 165093866 165094209 -32101223 + RLTR9A LTR ERVK 1 366 -2 1 1844 468 0 0 0 chr1 165094946 165094998 -32100434 + (CAAAC)n Simple_repeat Simple_repeat 2 53 0 1 1844 276 291 47 0 chr1 165095355 165095441 -32099991 - L2 LINE L2 -540 2879 2790 1 1844 399 338 81 29 chr1 165095837 165096047 -32099385 - MIRb SINE MIR -43 225 5 1 1844 363 23 0 0 chr1 165096723 165096767 -32098665 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1844 530 267 50 60 chr1 165096791 165096990 -32098442 + B3A SINE B2 2 198 0 1 1844 2245 199 5 180 chr1 165098529 165099264 -32096168 + RMER19C LTR ERVK 1 607 -4 1 1844 7133 85 7 25 chr1 165099585 165100586 -32094846 - RLTR13C1 LTR ERVK 0 983 1 1 1844 648 277 201 22 chr1 165101776 165102408 -32093024 - L1MC4a LINE L1 -10 7872 7128 1 1844 300 306 78 65 chr1 165102425 165102579 -32092853 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1844 277 274 70 39 chr1 165102590 165102719 -32092713 - L1MC4a LINE L1 -910 6972 6833 1 1844 3295 43 0 15 chr1 165104016 165104418 -32091014 - MTA_Mm LTR MaLR 0 396 1 1 1844 489 199 18 0 chr1 165104858 165105024 -32090408 + CT-rich Low_complexity Low_complexity 1 169 0 1 1844 409 161 0 22 chr1 165105500 165105589 -32089843 + CT-rich Low_complexity Low_complexity 1 87 0 1 1844 1105 111 0 16 chr1 165105589 165105772 -32089660 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1844 977 99 59 0 chr1 165105772 165105924 -32089508 - B2_Mm2 SINE B2 -34 161 1 1 1844 525 224 20 0 chr1 165106283 165106381 -32089051 + U1 snRNA snRNA 64 163 -2 1 1844 576 42 0 0 chr1 165106386 165106457 -32088975 + (GGAGA)n Simple_repeat Simple_repeat 3 73 0 1 1844 491 88 0 36 chr1 165106463 165106546 -32088886 + (GAAA)n Simple_repeat Simple_repeat 4 83 0 1 1844 408 232 10 20 chr1 165106548 165106649 -32088783 + GA-rich Low_complexity Low_complexity 2 101 0 1 1844 192 77 0 0 chr1 165106677 165106703 -32088729 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1844 510 17 0 0 chr1 165106708 165106767 -32088665 + (GTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1844 259 295 17 110 chr1 165107204 165107322 -32088110 + MIRc SINE MIR 19 125 -143 1 1844 298 350 51 0 chr1 165107979 165108116 -32087316 + Charlie10 DNA MER1_type 104 247 -2575 1 1844 369 286 35 95 chr1 165108131 165108313 -32087119 - MER45A DNA Tip100 -13 165 1 1 1844 338 339 89 69 chr1 165108549 165108955 -32086477 + Charlie10 DNA MER1_type 526 939 -1883 1 1844 1118 142 108 0 chr1 165109023 165109227 -32086205 - URR1A DNA MER1_type 0 226 1 1 1844 284 324 28 9 chr1 165109266 165109375 -32086057 + Charlie10 DNA MER1_type 959 1069 -1753 1 1844 228 67 0 0 chr1 165109375 165109405 -32086027 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1844 235 330 21 0 chr1 165109478 165109575 -32085857 + Charlie10 DNA MER1_type 1197 1295 -1527 1 1844 307 300 27 9 chr1 165109597 165109708 -32085724 + Charlie10 DNA MER1_type 1378 1485 -1337 1 1844 207 0 0 0 chr1 165109820 165109843 -32085589 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1844 235 227 55 96 chr1 165109845 165109918 -32085514 + MTE2b LTR MaLR 15 84 -295 1 1844 786 276 78 35 chr1 165109922 165110260 -32085172 + MTE2b LTR MaLR 52 379 0 1 1844 229 342 0 0 chr1 165110260 165110333 -32085099 - B4 SINE B4 -219 73 1 1 1844 398 274 38 0 chr1 165110975 165111081 -32084351 + MER20 DNA MER1_type 109 218 -1 1 1844 217 104 40 40 chr1 165111298 165111348 -32084084 + CT-rich Low_complexity Low_complexity 1 50 0 1 1844 232 276 25 62 chr1 165112481 165112562 -32082870 - MLT1L LTR MaLR -485 125 48 1 1844 305 183 250 0 chr1 165113095 165113155 -32082277 + ID4_ SINE ID 1 75 -8 1 1844 285 29 0 0 chr1 165113156 165113190 -32082242 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1844 388 171 30 18 chr1 165113283 165113450 -32081982 + GA-rich Low_complexity Low_complexity 2 170 0 1 1844 438 20 0 0 chr1 165113453 165113504 -32081928 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1 1844 204 200 0 0 chr1 165113509 165113549 -32081883 + (CCCA)n Simple_repeat Simple_repeat 1 40 0 1 1844 207 100 0 0 chr1 165113638 165113668 -32081764 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1844 453 351 45 45 chr1 165113976 165114197 -32081235 + MLT1J LTR MaLR 229 449 -63 1 1844 719 296 42 0 chr1 165114957 165115146 -32080286 + ID_B1 SINE B4 7 203 -21 1 1844 567 263 0 0 chr1 165115247 165115365 -32080067 + B1F SINE Alu 31 148 -1 1 1844 302 322 31 52 chr1 165116688 165116881 -32078551 + MIRb SINE MIR 1 189 -79 1 1844 288 0 0 0 chr1 165116935 165116967 -32078465 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1844 423 0 0 0 chr1 165116967 165117013 -32078419 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1844 240 238 0 47 chr1 165117282 165117388 -32078044 + A-rich Low_complexity Low_complexity 4 104 0 1 1844 553 310 0 0 chr1 165117389 165117547 -32077885 - Lx7 LINE L1 -377 7319 7162 1 1844 597 140 24 12 chr1 165118655 165118821 -32076611 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1844 211 106 64 0 chr1 165118839 165118886 -32076546 + (TATG)n Simple_repeat Simple_repeat 4 53 0 1 1844 228 239 28 14 chr1 165118889 165118961 -32076471 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1844 774 274 72 43 chr1 165118984 165119262 -32076170 - B4 SINE B4 -5 287 2 2 1844 514 252 0 0 chr1 165119638 165119737 -32075695 - B1_Mur1 SINE Alu -15 134 36 2 1844 523 241 130 315 chr1 165119749 165119795 -32075637 - B3A SINE B2 0 195 144 2 1844 357 43 0 0 chr1 165119795 165119842 -32075590 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1844 523 252 129 27 chr1 165119842 165119979 -32075453 - B3A SINE B2 -44 154 2 2 1844 637 205 30 145 chr1 165121200 165121434 -32073998 - MER121 Unknown Unknown -166 246 40 2 1844 368 181 12 0 chr1 165122078 165122161 -32073271 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1844 207 0 0 0 chr1 165122385 165122408 -32073024 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1844 198 0 0 0 chr1 165122408 165122429 -32073003 + (CG)n Simple_repeat Simple_repeat 2 23 0 2 1844 420 286 80 67 chr1 165122439 165122589 -32072843 - RSINE1 SINE B4 -8 157 6 2 1844 226 282 16 98 chr1 165122611 165122733 -32072699 - PB1D10 SINE Alu -1 116 5 2 1844 225 128 0 0 chr1 165123605 165123652 -32071780 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1844 222 191 0 0 chr1 165127851 165127898 -32067534 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1844 324 0 0 0 chr1 165128281 165128317 -32067115 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1844 217 0 61 0 chr1 165128649 165128682 -32066750 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1844 200 333 58 43 chr1 165129507 165129645 -32065787 + L2b LINE L2 3054 3193 -182 2 1844 385 324 134 21 chr1 165130751 165131035 -32064397 - L1ME1 LINE L1 -29 6150 5835 2 1844 897 296 88 16 chr1 165131067 165131318 -32064114 - B4 SINE B4 -19 273 5 2 1844 264 235 0 0 chr1 165131370 165131438 -32063994 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1844 476 282 38 16 chr1 165131647 165131831 -32063601 - L1ME1 LINE L1 -1404 4742 4555 2 1844 498 174 107 0 chr1 165131872 165131993 -32063439 - Lx9 LINE L1 -7 7637 7504 2 1844 815 293 27 98 chr1 165132180 165132499 -32062933 - MLT1B LTR MaLR -10 380 86 2 1844 3859 39 5 0 chr1 165132499 165132935 -32062497 + L1Md_T LINE L1 6145 6582 0 2 1844 815 293 27 98 chr1 165132935 165132952 -32062480 - MLT1B LTR MaLR -305 85 68 2 1844 432 0 0 0 chr1 165134093 165134141 -32061291 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1844 853 260 49 52 chr1 165134159 165134622 -32060810 - L1_Rod LINE L1 -157 5723 5219 2 1844 183 371 71 28 chr1 165135389 165135600 -32059832 - L2b LINE L2 -244 3131 2912 2 1844 408 275 16 8 chr1 165135689 165135810 -32059622 - MLT1A1 LTR MaLR -2 406 285 2 1844 1306 101 28 11 chr1 165136569 165136750 -32058682 + B2_Mm2 SINE B2 1 184 -11 2 1844 523 316 155 5 chr1 165138746 165138953 -32056479 - B4A SINE B4 -54 238 1 2 1844 396 0 0 0 chr1 165140172 165140216 -32055216 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 1844 273 57 0 0 chr1 165140216 165140251 -32055181 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1844 818 256 23 0 chr1 165140252 165140424 -32055008 - B3A SINE B2 -18 180 5 2 1844 1211 176 13 13 chr1 165140704 165140935 -32054497 - Lx LINE L1 -230 6424 6194 2 1844 535 180 66 0 chr1 165140934 165141056 -32054376 + Lx LINE L1 6487 6616 -38 2 1844 379 189 52 62 chr1 165141944 165142040 -32053392 + Lx8 LINE L1 6696 6790 -683 2 1844 248 158 0 0 chr1 165142040 165142078 -32053354 - tRNA-Ile-ATT tRNA tRNA -38 39 2 2 1844 1967 279 74 20 chr1 165142086 165142602 -32052830 + Lx8 LINE L1 6779 7329 -144 2 1844 317 77 39 0 chr1 165142602 165142654 -32052778 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 1844 1967 279 74 20 chr1 165142654 165142796 -32052636 + Lx8 LINE L1 7330 7473 0 2 1844 228 319 32 11 chr1 165143985 165144080 -32051352 - L1MC5 LINE L1 -402 7640 7544 2 1844 254 289 25 50 chr1 165144091 165144211 -32051221 - L1MC5 LINE L1 -534 7427 7311 2 1844 198 0 0 0 chr1 165144278 165144300 -32051132 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1844 28 0 0 0 chr1 165144450 165144478 -32050954 + AT_rich Low_complexity Low_complexity 1 28 0 2 1844 214 171 0 0 chr1 165144767 165144808 -32050624 + A-rich Low_complexity Low_complexity 6 46 0 2 1844 1023 302 152 22 chr1 165144999 165145758 -32049674 + L1MEc LINE L1 38 894 -5506 2 1844 1023 103 7 7 chr1 165146384 165146521 -32048911 + B1_Mus1 SINE Alu 2 138 -10 2 1844 485 271 85 19 chr1 165146579 165146790 -32048642 + L1MEc LINE L1 1768 1992 -4408 2 1844 9952 61 3 4 chr1 165147794 165149058 -32046374 - L1_Mm LINE L1 -746 5137 3875 2 1844 3642 75 6 0 chr1 165149055 165149518 -32045914 + L1_Mm LINE L1 5121 5586 -297 2 1844 8347 55 7 6 chr1 165149518 165150511 -32044921 + L1Md_F2 LINE L1 5587 6580 -2 2 1845 246 350 206 10 chr1 165150857 165151056 -32044376 - MIR SINE MIR -15 247 10 2 1845 261 282 11 45 chr1 165151350 165151439 -32043993 - MER45R DNA Tip100 -7 1574 1489 2 1845 403 276 0 22 chr1 165151391 165151480 -32043952 + B4A SINE B4 204 290 -2 2 1845 603 0 0 0 chr1 165151525 165151592 -32043840 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1845 311 395 26 13 chr1 165151623 165151777 -32043655 - MIRb SINE MIR -111 157 2 2 1845 462 79 0 0 chr1 165152511 165152574 -32042858 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1845 258 257 28 28 chr1 165152663 165152735 -32042697 - MIR3 SINE MIR -6 202 131 2 1845 2403 194 34 14 chr1 165153214 165153658 -32041774 - Lx5 LINE L1 -2 7048 6596 2 1845 1651 228 36 8 chr1 165153687 165154046 -32041386 + MTEa LTR MaLR 3 371 -8 2 1845 884 209 110 21 chr1 165154467 165154623 -32040809 + B3 SINE B2 2 153 -63 2 1845 392 55 18 0 chr1 165154623 165154678 -32040754 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 1845 884 209 110 21 chr1 165154678 165154712 -32040720 + B3 SINE B2 154 207 -9 2 1845 28 36 0 35 chr1 165154719 165154759 -32040673 + AT_rich Low_complexity Low_complexity 1 39 0 2 1845 1274 41 7 0 chr1 165154759 165154905 -32040527 - B1_Mus2 SINE Alu 0 147 1 2 1845 28 36 0 35 chr1 165154905 165154921 -32040511 + AT_rich Low_complexity Low_complexity 1 16 0 2 1845 21 0 0 0 chr1 165154998 165155019 -32040413 + AT_rich Low_complexity Low_complexity 1 21 0 2 1845 661 280 32 41 chr1 165155023 165155243 -32040189 + ORR1E LTR MaLR 4 221 -138 2 1845 1175 226 74 0 chr1 165155227 165155484 -32039948 + MTD LTR MaLR 136 411 -8 2 1845 257 212 75 15 chr1 165155501 165155568 -32039864 - L1M2 LINE L1 -501 5799 5729 2 1845 525 32 0 0 chr1 165156048 165156111 -32039321 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1845 252 0 0 0 chr1 165156111 165156139 -32039293 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1845 4055 176 79 66 chr1 165156233 165157124 -32038308 - RMER19B LTR ERVK 0 902 1 2 1845 365 278 0 0 chr1 165157284 165157356 -32038076 - MER20 DNA MER1_type -139 80 9 2 1845 291 296 70 101 chr1 165157723 165157740 -32037692 - B4A SINE B4 -56 236 149 2 1845 324 318 38 15 chr1 165157740 165157871 -32037561 - B1_Mus1 SINE Alu -7 141 8 2 1845 1714 275 35 29 chr1 165158774 165159294 -32036138 - Lx9 LINE L1 -764 6880 6358 2 1845 398 220 0 10 chr1 165159325 165159426 -32036006 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1845 201 195 0 0 chr1 165159511 165159552 -32035880 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1845 343 129 97 0 chr1 165159552 165159614 -32035818 - HAL1-3A_ME LINE L1 -846 2012 1945 2 1845 213 39 0 0 chr1 165159757 165159783 -32035649 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1845 3808 232 50 38 chr1 165159795 165160906 -32034526 - Lx9 LINE L1 -1670 5974 4811 2 1845 208 350 39 10 chr1 165161053 165161157 -32034275 - MIRb SINE MIR -45 223 117 2 1845 313 267 27 45 chr1 165162603 165162713 -32032719 + RLTR14 LTR ERV1 275 382 0 2 1845 204 232 58 0 chr1 165163087 165163143 -32032289 + MIR SINE MIR 208 276 0 2 1845 6315 45 0 3 chr1 165163790 165164510 -32030922 - L1Md_F2 LINE L1 -2 6580 5863 2 1845 3049 54 0 0 chr1 165165176 165165530 -32029902 - L1_Mus1 LINE L1 0 6567 6214 2 1845 643 96 211 0 chr1 165165530 165165634 -32029798 + L1_Mus1 LINE L1 6072 6197 -370 2 1845 710 227 6 13 chr1 165166168 165166324 -32029108 - MER45A DNA Tip100 0 178 24 2 1845 616 220 120 87 chr1 165166403 165166702 -32028730 + MER113A DNA MER1_type 6 314 0 2 1845 1435 268 40 77 chr1 165167411 165167960 -32027472 + MER99 DNA hAT? 1 529 -302 2 1845 5280 78 1 1 chr1 165167975 165168673 -32026759 + L1_Mus2 LINE L1 5869 6566 0 2 1845 218 295 113 0 chr1 165169632 165169721 -32025711 + L2c LINE L2 3063 3171 -216 2 1845 263 208 0 38 chr1 165170070 165170150 -32025282 + T-rich Low_complexity Low_complexity 1 77 0 2 1845 831 209 7 0 chr1 165171188 165171341 -32024091 + MTEa LTR MaLR 5 158 -221 2 1845 503 48 48 0 chr1 165171361 165171444 -32023988 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1845 577 297 6 25 chr1 165171444 165171606 -32023826 + MTEa LTR MaLR 163 321 -58 2 1845 246 401 35 35 chr1 165171779 165171921 -32023511 - MER115 DNA Tip100 -448 245 104 2 1845 281 304 67 18 chr1 165172199 165172363 -32023069 - L1M1 LINE L1 -417 5883 5712 2 1845 6643 1 0 0 chr1 165172372 165173101 -32022331 + L1Md_A LINE L1 5854 6582 0 2 1845 262 0 53 0 chr1 165173211 165173249 -32022183 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1845 279 0 0 0 chr1 165173688 165173719 -32021713 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1845 360 0 0 0 chr1 165173719 165173758 -32021674 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1845 980 135 0 12 chr1 165174227 165174399 -32021033 + (TTCC)n Simple_repeat Simple_repeat 4 173 0 2 1845 428 153 0 12 chr1 165174401 165174487 -32020945 + CT-rich Low_complexity Low_complexity 4 88 0 2 1845 580 87 0 21 chr1 165174480 165174574 -32020858 + (TCC)n Simple_repeat Simple_repeat 2 93 0 2 1845 449 48 0 31 chr1 165176755 165176820 -32018612 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 2 1845 382 23 0 0 chr1 165176822 165176866 -32018566 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1845 341 285 41 0 chr1 165176880 165177003 -32018429 - MIRb SINE MIR -82 186 59 2 1845 21 0 0 0 chr1 165177090 165177111 -32018321 + AT_rich Low_complexity Low_complexity 1 21 0 2 1845 229 89 22 22 chr1 165177503 165177549 -32017883 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1845 492 32 0 0 chr1 165182350 165182412 -32013020 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1845 285 239 22 4 chr1 165183799 165183869 -32011563 + MER5A1 DNA MER1_type 61 131 -58 2 1845 234 0 0 0 chr1 165184645 165184671 -32010761 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1845 494 205 90 41 chr1 165184770 165184892 -32010540 + MER94 DNA AcHobo 1 128 -6 3 1845 522 0 0 0 chr1 165187164 165187222 -32008210 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1845 332 281 10 20 chr1 165187342 165187440 -32007992 + CT-rich Low_complexity Low_complexity 4 100 0 3 1845 180 0 0 0 chr1 165188117 165188137 -32007295 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1845 189 0 0 0 chr1 165188909 165188930 -32006502 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1845 187 321 0 0 chr1 165189097 165189150 -32006282 - MIRb SINE MIR -85 183 131 3 1845 196 362 86 8 chr1 165189267 165189395 -32006037 - L2b LINE L2 -4 3371 3234 3 1845 245 146 21 0 chr1 165190759 165190807 -32004625 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3 1845 429 20 0 0 chr1 165191080 165191130 -32004302 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1845 185 65 32 0 chr1 165191216 165191247 -32004185 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 3 1845 324 0 0 0 chr1 165191539 165191575 -32003857 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1845 180 0 0 0 chr1 165193229 165193249 -32002183 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1845 1074 92 0 0 chr1 165193251 165193392 -32002040 - B1_Mus1 SINE Alu -6 142 2 3 1845 252 338 38 0 chr1 165195568 165195648 -31999784 - MIR3 SINE MIR -41 167 85 3 1845 843 201 16 55 chr1 165196211 165196425 -31999007 + Lx5 LINE L1 6722 6951 -107 3 1845 195 42 0 0 chr1 165198099 165198123 -31997309 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 1845 682 237 32 75 chr1 165198123 165198310 -31997122 + B3A SINE B2 5 183 -15 3 1845 231 88 0 0 chr1 165198310 165198344 -31997088 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1845 195 42 0 0 chr1 165198758 165198782 -31996650 + (TAA)n Simple_repeat Simple_repeat 2 25 0 3 1845 234 0 0 0 chr1 165199393 165199419 -31996013 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 3 1845 547 26 0 38 chr1 165199828 165199907 -31995525 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 3 1845 470 31 0 15 chr1 165200335 165200400 -31995032 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1845 438 196 33 0 chr1 165200961 165201053 -31994379 - MLT1A LTR MaLR 0 374 280 3 1845 462 274 11 50 chr1 165201132 165201280 -31994152 - MLT1A LTR MaLR -220 170 22 3 1845 21 36 0 0 chr1 165203768 165203796 -31991636 + AT_rich Low_complexity Low_complexity 1 28 0 3 1845 762 165 22 36 chr1 165203796 165203934 -31991498 - B1_Mus1 SINE Alu -8 140 5 3 1845 455 309 27 69 chr1 165203963 165204151 -31991281 - B3A SINE B2 -2 196 17 3 1845 324 0 0 0 chr1 165204223 165204259 -31991173 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1845 917 172 121 0 chr1 165205840 165206014 -31989418 + B3 SINE B2 5 199 -17 3 1845 251 264 161 21 chr1 165206384 165206396 -31989036 + ID_B1 SINE B4 70 94 -130 3 1845 283 294 144 19 chr1 165206396 165206500 -31988932 + PB1D10 SINE Alu 1 117 0 3 1845 242 288 87 43 chr1 165207607 165207745 -31987687 - L2c LINE L2 -63 3324 3181 3 1845 180 0 0 0 chr1 165208392 165208412 -31987020 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1845 483 158 17 17 chr1 165208437 165208553 -31986879 - L1_Mus3 LINE L1 -12 6626 6511 3 1845 1879 14 0 0 chr1 165208567 165208788 -31986644 + L1Md_T LINE L1 5366 5586 -297 3 1845 9043 5 0 0 chr1 165208788 165209784 -31985648 + L1Md_T LINE L1 5587 6582 0 3 1845 284 130 14 0 chr1 165211319 165211388 -31984044 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 3 1845 327 49 0 0 chr1 165214087 165214128 -31981304 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1845 183 355 86 14 chr1 165214463 165214603 -31980829 + L3 LINE CR1 4328 4477 -12 3 1845 240 305 17 87 chr1 165215846 165215961 -31979471 - AmnSINE1 SINE SINE -222 353 247 3 1845 306 0 0 0 chr1 165216131 165216165 -31979267 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1845 574 215 86 29 chr1 165217099 165217238 -31978194 + B1F SINE Alu 3 149 0 3 1845 195 204 0 0 chr1 165217864 165217908 -31977524 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1845 555 268 0 0 chr1 165218101 165218213 -31977219 - ID_B1 SINE B4 -31 193 82 3 1845 482 99 25 0 chr1 165219136 165219217 -31976215 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 3 1845 268 341 7 52 chr1 165219884 165220020 -31975412 - MIRb SINE MIR -23 245 116 3 1845 209 268 0 0 chr1 165221315 165221356 -31974076 + polypurine Low_complexity Low_complexity 5 45 0 3 1845 477 0 0 0 chr1 165221456 165221509 -31973923 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1845 252 0 0 0 chr1 165221509 165221536 -31973896 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1845 548 333 26 7 chr1 165221536 165221687 -31973745 - B3A SINE B2 -44 154 1 3 1845 193 231 19 37 chr1 165221918 165221972 -31973460 + L2a LINE L2 3112 3164 -223 3 1845 769 226 124 15 chr1 165223000 165223202 -31972230 - URR1A DNA MER1_type -2 224 1 3 1845 358 89 0 0 chr1 165224142 165224187 -31971245 - L1_Mus3 LINE L1 -385 6253 6209 3 1845 2446 114 13 5 chr1 165224187 165224565 -31970867 + L1_Mus3 LINE L1 6258 6638 0 3 1845 232 317 96 37 chr1 165224819 165225006 -31970426 + L2a LINE L2 3215 3412 -14 3 1845 4991 9 0 0 chr1 165227102 165227676 -31967756 + L1Md_T LINE L1 6037 6582 0 3 1845 1045 174 0 0 chr1 165230083 165230267 -31965165 - URR1B DNA MER1_type 0 225 42 3 1845 673 135 0 9 chr1 165230702 165230814 -31964618 - PB1D9 SINE Alu -1 119 9 3 1845 360 252 37 18 chr1 165230724 165230833 -31964599 - B4 SINE B4 -105 187 77 3 1845 230 170 0 19 chr1 165233507 165233538 -31961894 + polypurine Low_complexity Low_complexity 2 31 0 3 1845 1157 103 6 0 chr1 165233538 165233713 -31961719 + (GGA)n Simple_repeat Simple_repeat 3 178 0 3 1845 230 170 0 19 chr1 165233713 165233735 -31961697 + polypurine Low_complexity Low_complexity 32 53 0 3 1845 414 0 0 0 chr1 165234650 165234696 -31960736 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1845 332 360 0 21 chr1 165234739 165234881 -31960551 + B1F2 SINE Alu 4 142 -7 3 1845 495 0 0 0 chr1 165235974 165236029 -31959403 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1845 372 22 0 0 chr1 165236183 165236228 -31959204 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1845 276 30 0 0 chr1 165236495 165236528 -31958904 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1845 22 35 0 0 chr1 165237486 165237515 -31957917 + AT_rich Low_complexity Low_complexity 1 29 0 3 1845 405 39 0 0 chr1 165242875 165242926 -31952506 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1845 270 153 27 27 chr1 165243833 165243907 -31951525 + GA-rich Low_complexity Low_complexity 3 76 0 3 1845 231 114 0 0 chr1 165246514 165246549 -31948883 + (TTC)n Simple_repeat Simple_repeat 3 37 0 3 1845 1032 156 0 0 chr1 165246596 165246776 -31948656 + CT-rich Low_complexity Low_complexity 1 180 0 3 1845 381 22 0 0 chr1 165246776 165246822 -31948610 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1845 342 0 0 0 chr1 165248189 165248227 -31947205 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1845 804 234 17 6 chr1 165248750 165248922 -31946510 - Lx6 LINE L1 -26 7434 7261 3 1845 322 219 48 12 chr1 165248927 165249010 -31946422 - B1F1 SINE Alu -59 90 5 3 1845 180 358 37 9 chr1 165249024 165249131 -31946301 + MIRb SINE MIR 142 251 -17 3 1845 757 148 81 7 chr1 165249212 165249348 -31946084 - B1_Mus2 SINE Alu -1 146 1 3 1845 932 235 39 15 chr1 165249487 165249690 -31945742 + B3 SINE B2 2 209 -7 3 1845 221 311 54 0 chr1 165251207 165251281 -31944151 + B1F SINE Alu 2 79 -70 3 1845 438 41 41 0 chr1 165252232 165252305 -31943127 + (TTTTTG)n Simple_repeat Simple_repeat 3 78 0 3 1845 1057 76 14 7 chr1 165252309 165252455 -31942977 - B1_Mus1 SINE Alu 0 148 2 3 1845 279 252 30 0 chr1 165252648 165252747 -31942685 + L1M5 LINE L1 2831 2932 -3214 3 1845 302 292 14 0 chr1 165252898 165252970 -31942462 + PB1D9 SINE Alu 2 74 -46 3 1845 524 288 75 52 chr1 165252970 165253318 -31942114 + L1M5 LINE L1 3498 3853 -2293 3 1845 416 243 9 46 chr1 165253792 165253900 -31941532 + PB1D10 SINE Alu 13 116 -1 3 1845 1645 220 25 73 chr1 165254325 165254762 -31940670 + MTD LTR MaLR 1 416 -3 3 1845 208 319 65 21 chr1 165254907 165255000 -31940432 - MIRb SINE MIR -33 235 139 3 1845 551 53 0 13 chr1 165255012 165255088 -31940344 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 3 1845 895 286 30 41 chr1 165257521 165257816 -31937616 - B4 SINE B4 0 292 1 3 1845 229 348 0 42 chr1 165258172 165258244 -31937188 + ID4_ SINE ID 4 72 -11 3 1845 195 42 0 0 chr1 165258244 165258268 -31937164 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1845 1776 212 144 27 chr1 165258376 165258923 -31936509 - RMER19C LTR ERVK 0 611 1 3 1845 7132 99 68 27 chr1 165259471 165260595 -31934837 - Lx2 LINE L1 0 6997 5828 3 1845 285 29 0 0 chr1 165261162 165261196 -31934236 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 3 1845 244 82 40 40 chr1 165261352 165261428 -31934004 + (TTG)n Simple_repeat Simple_repeat 2 77 0 3 1845 1243 47 0 0 chr1 165261446 165261594 -31933838 - B1_Mus1 SINE Alu 0 148 1 3 1845 380 331 23 0 chr1 165261798 165261931 -31933501 - Lx8 LINE L1 -188 7285 7150 3 1845 4649 58 26 2 chr1 165261964 165262551 -31932881 - L1_Mus2 LINE L1 0 6566 5966 3 1845 6378 92 1 4 chr1 165262551 165263457 -31931975 - L1_Mm LINE L1 -3392 2491 1589 3 1845 290 385 60 67 chr1 165263457 165263755 -31931677 - MLT1G LTR MaLR -128 463 168 3 1845 1233 244 127 34 chr1 165263797 165264175 -31931257 - MTD LTR MaLR -5 414 2 3 1845 7536 71 4 2 chr1 165264478 165265436 -31929996 - L1_Mus2 LINE L1 -1 6565 5606 3 1845 1523 59 5 0 chr1 165265459 165265645 -31929787 + B2_Mm1t SINE B2 1 187 -6 3 1845 892 225 14 46 chr1 165266043 165266262 -31929170 + B3 SINE B2 1 212 -4 4 1845 249 119 0 0 chr1 165266363 165266405 -31929027 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1845 580 181 0 0 chr1 165267350 165267455 -31927977 + PB1D9 SINE Alu 15 119 -1 4 1845 216 158 0 0 chr1 165267544 165267582 -31927850 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 1845 291 157 0 0 chr1 165268122 165268173 -31927259 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1845 207 218 0 0 chr1 165268189 165268244 -31927188 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 4 1845 22 56 0 0 chr1 165271089 165271125 -31924307 + AT_rich Low_complexity Low_complexity 1 36 0 4 1845 399 206 9 78 chr1 165271909 165272025 -31923407 - Lx7 LINE L1 -3 7693 7586 4 1845 378 0 0 0 chr1 165272706 165272748 -31922684 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1845 234 0 0 0 chr1 165272806 165272832 -31922600 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1845 321 26 0 0 chr1 165272890 165272928 -31922504 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1845 1652 138 0 27 chr1 165272974 165273270 -31922162 + ORR1A3 LTR MaLR 3 290 -36 4 1845 738 78 0 0 chr1 165273270 165273373 -31922059 + B1_Mm SINE Alu 2 104 -43 4 1845 254 111 0 6 chr1 165273365 165273415 -31922017 + ORR1A3 LTR MaLR 316 365 -19 4 1845 2602 70 3 17 chr1 165273415 165273766 -31921666 + L1Md_F2 LINE L1 6224 6569 -13 4 1845 2383 85 28 0 chr1 165273831 165274149 -31921283 + ORR1A2 LTR MaLR 1 327 0 4 1845 286 299 94 14 chr1 165274639 165274946 -31920486 - L1MC LINE L1 -2854 3292 2956 4 1845 220 160 19 74 chr1 165274950 165275004 -31920428 - B1F1 SINE Alu -96 53 3 4 1845 414 142 71 62 chr1 165275169 165275282 -31920150 - ID_B1 SINE B4 -10 214 101 4 1845 703 268 92 145 chr1 165275323 165275746 -31919686 - L1MB3 LINE L1 -116 6067 5672 4 1845 213 39 0 0 chr1 165275746 165275772 -31919660 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1845 349 294 10 0 chr1 165275775 165275877 -31919555 - PB1D10 SINE Alu -13 104 2 4 1845 703 268 92 145 chr1 165275877 165275913 -31919519 - L1MB3 LINE L1 -512 5671 5656 4 1845 321 288 18 26 chr1 165275913 165276027 -31919405 - PB1D10 SINE Alu -3 114 2 4 1845 762 244 122 48 chr1 165276027 165276332 -31919100 - L1MB3 LINE L1 -512 5668 5364 4 1845 227 31 31 0 chr1 165276332 165276364 -31919068 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1845 795 295 87 8 chr1 165276364 165276764 -31918668 - L1MB3 LINE L1 -817 5363 4897 4 1845 186 128 0 0 chr1 165276768 165276807 -31918625 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1845 317 257 108 22 chr1 165276950 165276979 -31918453 - L1MB3 LINE L1 -1518 4628 4600 4 1845 5273 45 11 6 chr1 165276979 165277631 -31917801 + L1Md_F2 LINE L1 5928 6582 0 4 1845 317 250 40 15 chr1 165277631 165277740 -31917692 - L1MB3 LINE L1 -1547 4599 4480 4 1845 569 349 55 13 chr1 165277763 165278161 -31917271 - L1MB3 LINE L1 -1725 4415 4001 4 1845 313 215 49 37 chr1 165278185 165278267 -31917165 - PB1D7 SINE Alu -1 119 37 4 1845 23 0 0 0 chr1 165278291 165278314 -31917118 + AT_rich Low_complexity Low_complexity 1 23 0 4 1845 857 246 61 10 chr1 165278325 165278621 -31916811 + Lx9 LINE L1 7207 7517 -127 4 1845 236 245 17 86 chr1 165278646 165278820 -31916612 + Lx9 LINE L1 7477 7638 -6 4 1845 1294 195 28 28 chr1 165278999 165279326 -31916106 + RMER1C Other Other 1016 1342 0 4 230 1843 283 128 31 chr1 165279966 165282006 -31913426 + L1MA6 LINE L1 4059 6299 -1 4 1846 31 26 0 0 chr1 165282085 165282123 -31913309 + AT_rich Low_complexity Low_complexity 1 38 0 4 1846 1425 99 17 4 chr1 165282655 165282888 -31912544 - L1_Mm LINE L1 -2213 3670 3435 4 1846 3183 47 3 0 chr1 165282889 165283275 -31912157 + L1_Mus1 LINE L1 6181 6567 0 4 1846 28 29 0 0 chr1 165283275 165283310 -31912122 + AT_rich Low_complexity Low_complexity 1 35 0 4 1846 250 319 17 67 chr1 165283375 165283491 -31911941 + MIRc SINE MIR 64 171 -97 4 1846 439 283 43 21 chr1 165285342 165285483 -31909949 + RSINE1 SINE B4 3 146 -19 4 1846 231 308 0 55 chr1 165285594 165285704 -31909728 - MLT1A0 LTR MaLR -261 104 1 4 1846 457 144 65 161 chr1 165287440 165287564 -31907868 - B1F SINE Alu -37 112 1 4 1846 236 204 10 10 chr1 165288737 165288850 -31906582 + CT-rich Low_complexity Low_complexity 1 113 0 4 1846 426 108 0 0 chr1 165289727 165289792 -31905640 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1846 251 157 0 19 chr1 165290727 165290779 -31904653 + GA-rich Low_complexity Low_complexity 2 52 0 4 1846 198 0 0 0 chr1 165291818 165291840 -31903592 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1846 444 19 0 0 chr1 165293338 165293391 -31902041 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1846 529 229 12 6 chr1 165293391 165293558 -31901874 + (CATATA)n Simple_repeat Simple_repeat 6 173 0 4 1846 295 165 38 50 chr1 165295510 165295586 -31899846 + PB1D9 SINE Alu 34 120 0 4 1846 328 280 103 112 chr1 165295645 165295878 -31899554 + Charlie5 DNA MER1_type 2388 2618 -6 4 1846 949 256 45 0 chr1 165297050 165297249 -31898183 - B3 SINE B2 0 216 9 4 1846 276 30 0 0 chr1 165297312 165297345 -31898087 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1846 181 293 51 17 chr1 165297577 165297636 -31897796 + MIRc SINE MIR 66 126 -142 4 1846 250 111 47 16 chr1 165299658 165299722 -31895710 + A-rich Low_complexity Low_complexity 2 67 0 4 1846 246 247 53 11 chr1 165299801 165299895 -31895537 + CT-rich Low_complexity Low_complexity 5 102 0 4 1846 315 0 0 0 chr1 165299896 165299931 -31895501 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 1846 626 252 82 82 chr1 165301728 165301948 -31893484 + B4 SINE B4 2 221 -71 4 1846 446 232 127 140 chr1 165301964 165302231 -31893201 + L1MA8 LINE L1 5817 6108 -183 4 1846 527 290 50 37 chr1 165302231 165302392 -31893040 + RSINE1 SINE B4 3 165 0 4 1846 446 232 127 140 chr1 165302392 165302525 -31892907 + L1MA8 LINE L1 6109 6212 -79 4 1846 757 62 40 14 chr1 165302544 165302692 -31892740 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 1846 465 238 30 7 chr1 165303742 165303843 -31891589 + B1_Mur1 SINE Alu 1 141 -8 4 1846 886 247 43 86 chr1 165304985 165305264 -31890168 + B4A SINE B4 1 267 -25 4 1846 202 194 15 15 chr1 165305324 165305392 -31890040 + (CATA)n Simple_repeat Simple_repeat 4 71 0 4 1846 343 83 0 20 chr1 165305396 165305445 -31889987 + HAL1-3A_ME LINE L1 1976 2023 -835 4 1846 302 163 39 58 chr1 165305700 165305804 -31889628 + CT-rich Low_complexity Low_complexity 1 102 0 4 1846 226 103 0 65 chr1 165306122 165306184 -31889248 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 4 1846 253 289 123 8 chr1 165306217 165306339 -31889093 - L2a LINE L2 -4 3422 3287 4 1846 296 280 63 24 chr1 165306384 165306511 -31888921 - MIRb SINE MIR -113 155 17 4 1846 189 0 0 0 chr1 165307599 165307620 -31887812 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 4 1846 23 0 0 0 chr1 165307674 165307697 -31887735 + AT_rich Low_complexity Low_complexity 1 23 0 4 1846 211 338 62 0 chr1 165308087 165308167 -31887265 - L4 LINE RTE -959 1070 986 4 1846 22 0 0 0 chr1 165308506 165308528 -31886904 + AT_rich Low_complexity Low_complexity 1 22 0 4 1846 257 143 100 100 chr1 165308529 165308599 -31886833 - B1F SINE Alu -1 148 79 4 1846 743 270 103 21 chr1 165308595 165308886 -31886546 - RMER5 LTR ERV1 -35 499 185 4 1846 723 261 169 53 chr1 165309025 165309345 -31886087 + MTE2b LTR MaLR 13 369 -10 4 1846 389 226 73 120 chr1 165310205 165310396 -31885036 + MamGypLTR1c LTR Gypsy 3 184 -619 4 1846 242 341 15 75 chr1 165310461 165310594 -31884838 + MamGypLTR2b LTR Gypsy 3 127 -795 4 1846 476 293 176 25 chr1 165311236 165311648 -31883784 + LTR48B LTR ERV1 90 756 -31 4 1846 409 275 61 0 chr1 165311650 165311781 -31883651 + B1_Mur1 SINE Alu 2 140 -9 4 1846 189 0 0 0 chr1 165314195 165314216 -31881216 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1846 360 0 0 0 chr1 165314774 165314814 -31880618 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1846 320 324 19 19 chr1 165317100 165317207 -31878225 - MER63B DNA AcHobo -39 397 291 4 1846 439 312 99 6 chr1 165317446 165317607 -31877825 - MER20 DNA MER1_type 0 219 44 4 1846 438 139 0 0 chr1 165317749 165317821 -31877611 + (GGGGA)n Simple_repeat Simple_repeat 5 76 0 4 1846 198 91 0 0 chr1 165318867 165318900 -31876532 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1846 337 294 62 16 chr1 165319712 165319840 -31875592 + Looper DNA PiggyBac 1 134 -1424 4 1846 344 278 274 0 chr1 165319861 165320198 -31875234 + Looper DNA PiggyBac 233 660 -898 4 1846 399 309 120 39 chr1 165320265 165320608 -31874824 + MLT1C LTR MaLR 109 501 -4 4 1846 330 26 0 0 chr1 165321181 165321220 -31874212 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1846 567 234 0 0 chr1 165322001 165322108 -31873324 - PB1D7 SINE Alu -13 107 1 4 1846 342 0 0 0 chr1 165323181 165323219 -31872213 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1846 406 298 43 0 chr1 165323528 165323622 -31871810 - PB1D10 SINE Alu -11 106 9 4 1846 263 265 36 122 chr1 165323967 165324088 -31871344 - PB1D10 SINE Alu -8 119 6 4 1846 227 272 0 174 chr1 165326407 165326505 -31868927 + MIR SINE MIR 34 114 -148 4 1846 366 225 0 0 chr1 165326508 165326619 -31868813 + (TG)n Simple_repeat Simple_repeat 2 112 0 4 1846 211 336 67 8 chr1 165326624 165326744 -31868688 - B1F SINE Alu -10 139 13 4 1846 343 176 95 0 chr1 165328040 165328114 -31867318 + ID2 SINE ID 3 83 0 4 1846 1325 243 108 0 chr1 165328394 165328736 -31866696 + MTE2b LTR MaLR 1 379 0 4 1846 244 276 53 0 chr1 165329189 165329265 -31866167 - ID4 SINE ID -3 80 1 4 1846 645 238 130 6 chr1 165329596 165329765 -31865667 - B3 SINE B2 -10 206 17 4 1846 263 206 64 16 chr1 165330547 165330662 -31864770 + L1M5 LINE L1 4483 4606 -1540 4 1846 561 291 0 20 chr1 165330773 165330924 -31864508 + RSINE1 SINE B4 8 155 -10 4 1846 235 258 0 29 chr1 165331039 165331107 -31864325 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 4 1846 317 278 0 3 chr1 165331745 165331856 -31863576 - Lx2 LINE L1 -1240 5757 5649 4 1846 182 295 194 35 chr1 165332728 165332872 -31862560 - L3 LINE CR1 -353 4136 3970 4 1846 528 220 110 0 chr1 165335753 165335871 -31859561 + B1F SINE Alu 4 134 -15 4 1846 477 0 0 0 chr1 165335877 165335930 -31859502 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 5 1846 293 323 12 37 chr1 165335975 165336139 -31859293 + RSINE1 SINE B4 2 161 -4 5 1846 2564 156 15 64 chr1 165337000 165337481 -31857951 - RMER6B LTR ERVK -4 457 1 5 1846 328 390 32 23 chr1 165337481 165337693 -31857739 - ORR1E LTR MaLR -139 220 7 5 1846 553 343 48 38 chr1 165337880 165338171 -31857261 + MLT1A0 LTR MaLR 56 349 -16 5 1846 341 278 107 36 chr1 165338302 165338414 -31857018 + MTEa LTR MaLR 1 120 -259 5 1846 440 254 153 36 chr1 165338553 165338642 -31856790 - L1MEc LINE L1 -4216 2184 2083 5 1846 180 0 0 0 chr1 165338642 165338662 -31856770 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 5 1846 440 254 153 36 chr1 165338662 165338821 -31856611 - L1MEc LINE L1 -4318 2082 1907 5 1846 769 278 68 74 chr1 165338856 165339179 -31856253 - ORR1E LTR MaLR -36 323 3 5 1846 642 294 168 18 chr1 165339377 165340529 -31854903 - L1MEc LINE L1 -4807 1593 270 5 1846 462 214 34 0 chr1 165341078 165341234 -31854198 - L1MA4 LINE L1 -19 5828 5658 5 1846 369 0 0 0 chr1 165341519 165341560 -31853872 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1846 781 309 3 81 chr1 165341831 165342141 -31853291 + B4A SINE B4 1 286 -6 5 1846 578 71 12 0 chr1 165342382 165342466 -31852966 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 5 1846 281 291 43 50 chr1 165344407 165344548 -31850884 - L3 LINE CR1 -392 4097 3958 5 1846 239 295 146 10 chr1 165346798 165346894 -31848538 - MIR SINE MIR -139 123 15 5 1846 266 254 0 0 chr1 165347247 165347310 -31848122 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1846 22 56 0 0 chr1 165347425 165347461 -31847971 + AT_rich Low_complexity Low_complexity 1 36 0 5 1846 210 194 0 27 chr1 165347819 165347856 -31847576 - ID4_ SINE ID -36 47 12 5 1846 1238 253 172 19 chr1 165347862 165348503 -31846929 + Lx9 LINE L1 6524 7262 -382 5 1846 1400 274 34 4 chr1 165349173 165349638 -31845794 - L1_Mur3 LINE L1 -707 5173 4695 5 1846 2474 305 102 18 chr1 165349724 165350896 -31844536 + Lx8 LINE L1 6101 7370 -103 5 1846 603 266 142 13 chr1 165350994 165351303 -31844129 - L1MA4 LINE L1 -370 5930 5582 5 1846 310 303 43 55 chr1 165351858 165352022 -31843410 - MER110A LTR ERV1 -9 459 298 5 1846 710 144 16 23 chr1 165352027 165352155 -31843277 + B2_Mm2 SINE B2 3 129 -66 5 1846 465 19 0 0 chr1 165352160 165352214 -31843218 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1846 465 299 83 0 chr1 165352888 165353032 -31842400 - MLT1A LTR MaLR -3 371 216 5 1846 254 293 0 0 chr1 165353052 165353110 -31842322 + polypurine Low_complexity Low_complexity 3 60 0 5 1846 267 327 38 19 chr1 165353130 165353236 -31842196 - MLT1A LTR MaLR -257 108 1 5 1846 1019 61 7 0 chr1 165354110 165354258 -31841174 + (GA)n Simple_repeat Simple_repeat 1 149 0 5 1846 1463 197 140 11 chr1 165354837 165355202 -31840230 + MTD LTR MaLR 7 418 -1 5 1846 863 102 64 21 chr1 165355792 165355932 -31839500 - B1_Mus1 SINE Alu 0 148 3 5 1846 2900 136 20 14 chr1 165356463 165356957 -31838475 - Lx LINE L1 0 6654 6158 5 1846 546 97 0 0 chr1 165356957 165357029 -31838403 + Lx LINE L1 6089 6160 -494 5 1846 2438 156 2 26 chr1 165357226 165357641 -31837791 - MTB_Mm LTR MaLR 0 407 3 5 1846 233 271 153 20 chr1 165358948 165359046 -31836386 + PB1D10 SINE Alu 6 116 -1 5 1846 3395 30 5 0 chr1 165359065 165359459 -31835973 + MTA_Mm LTR MaLR 1 396 0 5 1846 294 194 158 21 chr1 165359559 165359654 -31835778 - PB1D10 SINE Alu -7 110 3 5 1846 228 314 82 45 chr1 165360536 165360646 -31834786 - PB1D9 SINE Alu -6 114 1 5 1846 5790 61 59 6 chr1 165360751 165361581 -31833851 - L1_Mus1 LINE L1 0 6567 5694 5 1846 30484 107 25 4 chr1 165361571 165367513 -31827919 - L1Md_F2 LINE L1 -520 6062 99 5 1846 433 333 6 49 chr1 165367895 165368059 -31827373 - MIRb SINE MIR -78 190 34 5 1846 932 249 57 0 chr1 165368189 165368398 -31827034 - ID_B1 SINE B4 -1 223 3 5 1846 296 217 21 3 chr1 165368729 165368798 -31826634 + tRNA-Ala-GCA tRNA tRNA 3 72 -3 5 1846 208 88 88 0 chr1 165368806 165368863 -31826569 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1846 294 106 0 0 chr1 165371749 165371796 -31823636 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1846 209 159 0 16 chr1 165372223 165372287 -31823145 + T-rich Low_complexity Low_complexity 3 65 0 5 1846 2758 221 50 13 chr1 165375290 165375924 -31819508 - Lx6 LINE L1 -4 7456 6799 5 1846 349 252 27 94 chr1 165375925 165376074 -31819358 + RLTR15 LTR ERVK 1 139 -220 5 1846 198 128 0 0 chr1 165376099 165376138 -31819294 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1846 573 225 55 70 chr1 165376163 165376435 -31818997 + RLTR15 LTR ERVK 72 339 -20 5 1846 2311 185 23 0 chr1 165376453 165376886 -31818546 - Lx6 LINE L1 -668 6792 6350 5 1846 333 227 85 68 chr1 165376886 165377004 -31818428 - MTE2b-int LTR MaLR -1460 120 1 5 1846 1360 268 47 14 chr1 165377004 165377357 -31818075 - MTE2b LTR MaLR -12 367 3 5 1846 327 321 70 89 chr1 165377358 165377547 -31817885 - L1MC4a LINE L1 -2024 5858 5674 5 1846 495 0 0 0 chr1 165377547 165377602 -31817830 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1846 327 321 70 89 chr1 165377602 165377682 -31817750 - L1MC4a LINE L1 -2209 5673 5594 5 1846 526 348 28 19 chr1 165377858 165378069 -31817363 - ORR1E LTR MaLR -146 213 1 5 1846 382 205 17 17 chr1 165378161 165378280 -31817152 + L1M2 LINE L1 4676 4794 -1349 5 1846 819 78 155 0 chr1 165378280 165378396 -31817036 + B1_Mm SINE Alu 1 134 -13 5 1846 200 59 29 0 chr1 165378398 165378432 -31817000 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1846 1353 267 85 26 chr1 165378458 165379115 -31816317 - L1M2 LINE L1 -1512 4631 3936 5 1846 808 268 81 0 chr1 165379137 165379335 -31816097 - B3 SINE B2 0 216 3 5 1846 319 268 248 26 chr1 165379399 165379633 -31815799 - L1MC4a LINE L1 -2231 3915 3630 5 1846 3965 58 8 0 chr1 165379710 165380212 -31815220 - L1Md_F2 LINE L1 0 6582 6077 5 1846 3508 47 2 0 chr1 165380212 165380663 -31814769 + L1Md_F2 LINE L1 5621 6072 -510 5 1846 319 242 159 0 chr1 165380683 165380815 -31814617 - L1MC4a LINE L1 -2670 3473 3318 5 1846 704 250 0 0 chr1 165381785 165381925 -31813507 - B1_Mur2 SINE Alu -8 141 2 5 1846 378 98 12 24 chr1 165382009 165382093 -31813339 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1846 494 240 194 93 chr1 165382204 165382452 -31812980 - LTR48 LTR ERV1 -512 275 3 5 1846 29 60 0 0 chr1 165382500 165382550 -31812882 + AT_rich Low_complexity Low_complexity 1 50 0 5 1846 534 238 90 35 chr1 165382664 165382864 -31812568 + B3 SINE B2 5 215 -1 5 1846 1606 270 153 35 chr1 165383183 165384085 -31811347 + Lx8 LINE L1 6380 7464 -9 5 1846 301 361 97 0 chr1 165384133 165384288 -31811144 - HAL1-3A_ME LINE L1 -712 2146 1977 5 1846 585 346 58 0 chr1 165384611 165384799 -31810633 - ID_B1 SINE B4 -3 221 23 5 1846 236 289 52 13 chr1 165385289 165385366 -31810066 + PB1D9 SINE Alu 41 120 0 5 1846 984 123 0 32 chr1 165385367 165385552 -31809880 + GA-rich Low_complexity Low_complexity 1 179 0 5 1846 213 211 0 0 chr1 165386626 165386678 -31808754 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1846 348 319 32 56 chr1 165386727 165386853 -31808579 - RSINE1 SINE B4 -15 150 28 5 1846 319 258 104 15 chr1 165386932 165387066 -31808366 - B1F SINE Alu 0 149 4 5 1846 402 132 0 0 chr1 165387066 165387142 -31808290 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 5 1846 15936 46 3 1 chr1 165387147 165389884 -31805548 - L1Md_F3 LINE L1 -14 6570 3828 5 1846 758 42 0 0 chr1 165389881 165389976 -31805456 + L1Md_T LINE L1 5492 5586 -297 5 1846 8460 30 1 1 chr1 165389976 165390972 -31804460 + L1Md_T LINE L1 5587 6582 0 5 1846 1276 95 11 11 chr1 165392619 165392810 -31802622 + B2_Mm2 SINE B2 3 193 -2 5 1846 271 133 51 39 chr1 165392857 165392935 -31802497 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 5 1846 1163 245 61 101 chr1 165393175 165393502 -31801930 - MTE2a LTR MaLR 0 379 53 5 1846 291 28 0 0 chr1 165393502 165393538 -31801894 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1846 1163 245 61 101 chr1 165393538 165393605 -31801827 - MTE2a LTR MaLR -327 52 1 5 1846 780 327 124 10 chr1 165393988 165394383 -31801049 - MLT1D LTR MaLR -43 462 23 5 1846 502 116 12 0 chr1 165394726 165394812 -31800620 - RMER1A Other Other -4 1026 940 5 1846 1310 238 102 0 chr1 165394804 165395252 -31800180 - RMER1B Other Other -536 494 1 5 1846 683 355 32 16 chr1 165395612 165395861 -31799571 - B4 SINE B4 -10 282 30 5 1846 368 276 86 0 chr1 165395921 165396026 -31799406 - PB1D10 SINE Alu -3 114 1 5 1846 23 0 0 0 chr1 165397180 165397203 -31798229 + AT_rich Low_complexity Low_complexity 1 23 0 5 1846 245 287 0 73 chr1 165397206 165397315 -31798117 - Lx9 LINE L1 -7 7637 7537 5 1846 243 0 0 0 chr1 165397349 165397376 -31798056 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1846 249 320 89 44 chr1 165397905 165398044 -31797388 - MIRc SINE MIR -117 151 3 5 1846 1694 198 43 20 chr1 165398157 165398507 -31796925 - MTD LTR MaLR -39 380 23 5 1846 202 261 0 0 chr1 165398590 165398636 -31796796 + CT-rich Low_complexity Low_complexity 3 48 0 5 1846 2854 30 9 0 chr1 165398649 165398983 -31796449 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1846 20344 10 1 0 chr1 165398983 165401340 -31794092 - IAPEz-int LTR ERVK 0 6481 4123 5 1846 886 73 24 0 chr1 165401342 165401465 -31793967 - IAPEz-int LTR ERVK -2770 4910 4785 5 1846 1739 115 4 4 chr1 165401462 165401724 -31793708 - IAPEz-int LTR ERVK -5183 2497 2236 5 1846 424 38 0 0 chr1 165401723 165401776 -31793656 - IAPEz-int LTR ERVK -5070 1411 1359 5 1846 4767 43 32 17 chr1 165401776 165402434 -31792998 - IAPEz-int LTR ERVK -5819 662 3 5 1846 2871 27 9 0 chr1 165402436 165402770 -31792662 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1846 2079 102 6 63 chr1 165402921 165403255 -31792177 + ORR1A2 LTR MaLR 5 319 -8 5 1846 440 371 7 0 chr1 165404215 165404358 -31791074 - MIR SINE MIR -116 146 3 5 1846 22 35 0 0 chr1 165404391 165404420 -31791012 + AT_rich Low_complexity Low_complexity 1 29 0 5 1846 1458 208 106 12 chr1 165405210 165405390 -31790042 - ORR1D1 LTR MaLR -1 373 179 5 1846 469 100 11 11 chr1 165405390 165405481 -31789951 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 5 1846 1458 208 106 12 chr1 165405481 165405641 -31789791 - ORR1D1 LTR MaLR -196 178 2 5 1846 530 321 0 0 chr1 165405677 165405814 -31789618 - B1_Mur1 SINE Alu -11 138 2 5 1846 297 0 0 0 chr1 165406271 165406304 -31789128 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1846 555 16 0 0 chr1 165406963 165407027 -31788405 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1846 395 346 72 65 chr1 165407257 165407535 -31787897 + ORR1E LTR MaLR 74 353 -6 5 1846 485 320 85 25 chr1 165409327 165409811 -31785621 + L1MEg LINE L1 402 914 -5170 5 1846 615 330 50 7 chr1 165410091 165410393 -31785039 + Lx8 LINE L1 6121 6435 -1038 6 1846 235 194 86 43 chr1 165410394 165410464 -31784968 + MLT2B5 LTR ERVL 353 425 -130 6 1846 979 356 79 24 chr1 165410508 165411130 -31784302 + Lx8 LINE L1 6566 7221 -252 6 1846 213 39 0 0 chr1 165411469 165411495 -31783937 + (ATG)n Simple_repeat Simple_repeat 1 26 0 6 1847 319 215 156 31 chr1 165412924 165413020 -31782412 + PB1D10 SINE Alu 2 109 -8 6 1847 297 0 0 0 chr1 165413333 165413366 -31782066 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1847 1719 168 46 7 chr1 165413366 165413671 -31781761 - RLTR20C LTR ERVK -217 317 1 6 1847 234 304 14 0 chr1 165413717 165413786 -31781646 + ID2 SINE ID 4 73 -10 6 1847 315 0 0 0 chr1 165414100 165414135 -31781297 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1847 281 310 93 33 chr1 165414144 165414294 -31781138 - RSINE1 SINE B4 -6 159 1 6 1847 23 0 0 0 chr1 165414379 165414402 -31781030 + AT_rich Low_complexity Low_complexity 1 23 0 6 1847 1680 272 47 62 chr1 165414413 165415291 -31780141 + L1M2 LINE L1 3933 4797 -1346 6 1847 341 229 115 0 chr1 165415314 165415436 -31779996 - L1MA6 LINE L1 -26 6274 6139 6 1847 321 307 45 11 chr1 165415609 165415698 -31779734 - RSINE1 SINE B4 -23 142 51 6 1847 1193 69 0 0 chr1 165416709 165416854 -31778578 + B1_Mus2 SINE Alu 1 145 -2 6 1847 228 175 70 0 chr1 165417045 165417102 -31778330 + L1M5 LINE L1 5837 5897 -343 6 1847 773 228 38 12 chr1 165417279 165417519 -31777913 - RMER17C LTR ERVK -164 246 1 6 1847 2018 139 182 33 chr1 165417519 165418130 -31777302 - RMER17C-int LTR ERVK 0 3238 2537 6 1847 738 173 37 6 chr1 165418130 165418293 -31777139 - RMER17C-int LTR ERVK -907 2331 2164 6 1847 849 183 197 55 chr1 165418292 165418709 -31776723 - RMER17C-int LTR ERVK -1250 1988 1513 6 1847 496 306 36 60 chr1 165419135 165419302 -31776130 + B3A SINE B2 2 164 -34 6 1847 306 0 0 0 chr1 165419306 165419340 -31776092 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1847 21 36 0 0 chr1 165419340 165419368 -31776064 + AT_rich Low_complexity Low_complexity 1 28 0 6 1847 446 294 25 0 chr1 165419480 165419684 -31775748 + L1ME3A LINE L1 5189 5397 -749 6 1847 566 338 62 57 chr1 165419760 165420114 -31775318 + L1ME3A LINE L1 5486 5841 -332 6 1847 21 0 0 0 chr1 165421586 165421607 -31773825 + AT_rich Low_complexity Low_complexity 1 21 0 6 1847 780 189 14 0 chr1 165421654 165421797 -31773635 - B1_Mus2 SINE Alu -1 146 2 6 1847 417 39 0 0 chr1 165423987 165424038 -31771394 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1847 192 252 28 0 chr1 165424745 165424852 -31770580 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 1847 224 185 0 18 chr1 165424865 165424920 -31770512 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 6 1847 4221 161 132 22 chr1 165424925 165425743 -31769689 - RMER13B LTR ERVK 0 908 1 6 1847 411 315 111 3 chr1 165426094 165426447 -31768985 - L1MEc LINE L1 -416 5936 5546 6 1847 480 273 43 53 chr1 165426691 165426973 -31768459 - L1MEc LINE L1 -880 5439 5161 6 1847 1817 274 49 42 chr1 165427552 165428468 -31766964 - L1MEc LINE L1 -5146 1254 332 6 1847 477 291 90 6 chr1 165428575 165428741 -31766691 + B3A SINE B2 5 184 -14 6 1847 219 333 130 10 chr1 165429436 165429536 -31765896 - B1F SINE Alu -20 129 18 6 1847 24 67 0 0 chr1 165429897 165429942 -31765490 + AT_rich Low_complexity Low_complexity 1 45 0 6 1847 645 73 0 0 chr1 165430015 165430111 -31765321 + (TC)n Simple_repeat Simple_repeat 2 97 0 6 1847 2668 84 26 16 chr1 165430135 165430522 -31764910 + L1Md_F2 LINE L1 6192 6582 0 6 1847 372 389 78 75 chr1 165430534 165430895 -31764537 - MLT1D LTR MaLR -113 392 31 6 1847 252 0 0 0 chr1 165430972 165431000 -31764432 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1847 612 116 0 0 chr1 165431000 165431095 -31764337 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 6 1847 971 285 94 26 chr1 165431232 165431690 -31763742 + Lx8 LINE L1 6662 7150 -323 6 1847 347 60 20 0 chr1 165432628 165432678 -31762754 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 6 1847 498 270 24 136 chr1 165432725 165432931 -31762501 - B3A SINE B2 -15 183 1 6 1847 438 268 0 51 chr1 165434000 165434118 -31761314 - RSINE1 SINE B4 -6 159 48 6 1847 23 0 0 0 chr1 165434194 165434217 -31761215 + AT_rich Low_complexity Low_complexity 1 23 0 6 1847 233 231 48 95 chr1 165434507 165434612 -31760820 + L2a LINE L2 3326 3425 -1 6 1847 1100 141 10 25 chr1 165434678 165434875 -31760557 - B2_Mm2 SINE B2 0 195 2 6 1847 341 58 19 0 chr1 165436105 165436157 -31759275 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1847 706 156 0 37 chr1 165436184 165436371 -31759061 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1847 234 0 0 0 chr1 165436966 165436992 -31758440 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1847 574 311 40 8 chr1 165437233 165437419 -31758013 + B3A SINE B2 2 186 -30 6 1847 290 353 148 32 chr1 165437597 165437875 -31757557 + ORR1E LTR MaLR 44 353 -6 6 1847 25 31 0 0 chr1 165438323 165438355 -31757077 + AT_rich Low_complexity Low_complexity 1 32 0 6 1847 644 270 32 38 chr1 165439124 165439309 -31756123 - B3 SINE B2 -4 212 29 6 1847 5177 164 86 50 chr1 165439531 165440677 -31754755 + RMER12 LTR ERVK 1 1188 -134 6 1847 1919 123 38 177 chr1 165441031 165441477 -31753955 - ORR1C2 LTR MaLR 0 384 1 6 1847 838 166 7 4 chr1 165442595 165442882 -31752550 + GA-rich Low_complexity Low_complexity 1 288 0 6 1847 189 154 0 0 chr1 165443348 165443387 -31752045 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1847 502 237 0 20 chr1 165443392 165443491 -31751941 - PB1D9 SINE Alu -1 119 23 6 1847 285 51 0 0 chr1 165443519 165443558 -31751874 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1847 470 306 64 39 chr1 165443853 165444135 -31751297 + B4A SINE B4 2 290 -2 6 1847 719 251 43 19 chr1 165444197 165444408 -31751024 - B3 SINE B2 0 216 1 6 1847 182 291 24 60 chr1 165444723 165444807 -31750625 + L3 LINE CR1 3434 3514 -975 6 1847 725 337 13 26 chr1 165445118 165445420 -31750012 + MARNA DNA Mariner 193 490 -96 6 1847 394 354 73 53 chr1 165446125 165446331 -31749101 - B4A SINE B4 -1 291 82 6 1847 262 282 25 13 chr1 165446384 165446463 -31748969 - B4A SINE B4 -211 81 2 6 1847 269 175 32 0 chr1 165446656 165446719 -31748713 - ID2 SINE ID -11 72 8 6 1847 4631 153 87 14 chr1 165446971 165447812 -31747620 + RMER19B LTR ERVK 1 902 0 6 1847 838 316 21 57 chr1 165449001 165449280 -31746152 + B4 SINE B4 4 272 -20 6 1847 528 16 0 0 chr1 165449284 165449345 -31746087 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1847 1594 292 121 33 chr1 165449350 165450803 -31744629 + L1_Mur3 LINE L1 2930 4510 -1370 6 1847 681 268 138 0 chr1 165450963 165451202 -31744230 + Lx8 LINE L1 6515 6786 -687 6 1847 256 283 65 9 chr1 165451615 165451722 -31743710 - L1M4 LINE L1 -407 5757 5645 6 1847 259 277 26 9 chr1 165451897 165452010 -31743422 - L1M4 LINE L1 -918 5426 5312 6 1847 23 0 0 0 chr1 165452113 165452136 -31743296 + AT_rich Low_complexity Low_complexity 1 23 0 6 1847 701 236 19 0 chr1 165452161 165452318 -31743114 - RSINE1 SINE B4 -1 164 5 6 1847 471 341 69 61 chr1 165452323 165452785 -31742647 - L1M4 LINE L1 -928 5218 4753 6 1847 442 324 100 64 chr1 165452976 165453306 -31742126 - L1ME1 LINE L1 -28 6151 5810 6 1847 1078 89 0 40 chr1 165455738 165455890 -31739542 + B1_Mus1 SINE Alu 1 146 -2 6 1847 298 0 23 23 chr1 165455890 165455933 -31739499 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1847 555 225 0 0 chr1 165456893 165457031 -31738401 + (TA)n Simple_repeat Simple_repeat 2 139 0 6 1847 780 216 210 0 chr1 165457157 165457324 -31738108 + B3 SINE B2 5 206 -10 6 1847 213 311 47 78 chr1 165458850 165458979 -31736453 + L2c LINE L2 3246 3370 -17 6 1847 3600 77 15 0 chr1 165459076 165459606 -31735826 - L1_Mus3 LINE L1 -549 6089 5553 6 1847 4299 68 7 0 chr1 165459606 165460163 -31735269 + L1_Mus3 LINE L1 6076 6636 -2 6 1847 1370 67 0 27 chr1 165461739 165461924 -31733508 + B2_Mm2 SINE B2 2 181 -14 6 1847 896 275 100 20 chr1 165462185 165462534 -31732898 - MTE2a LTR MaLR -2 377 1 6 1847 981 302 13 21 chr1 165463047 165463284 -31732148 + B4A SINE B4 4 238 -54 6 1847 186 143 0 0 chr1 165463289 165463324 -31732108 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1847 549 0 0 0 chr1 165463336 165463397 -31732035 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 6 1847 894 311 38 42 chr1 165463421 165463710 -31731722 - B4A SINE B4 0 292 5 6 1847 683 216 54 7 chr1 165463769 165463918 -31731514 - RSINE1 SINE B4 -2 163 8 6 1847 228 246 0 34 chr1 165463931 165463990 -31731442 - PB1D10 SINE Alu -14 103 47 6 1847 218 156 22 0 chr1 165464441 165464486 -31730946 + GA-rich Low_complexity Low_complexity 3 48 0 6 1847 190 262 45 90 chr1 165465248 165465315 -31730117 - MER5A DNA MER1_type -36 153 90 6 1847 331 274 80 48 chr1 165467255 165467443 -31727989 + Charlie22a DNA MER1_type 10 203 -288 6 1847 363 250 11 0 chr1 165467487 165467575 -31727857 + Charlie22a DNA MER1_type 403 491 0 6 1847 599 98 0 11 chr1 165468439 165468532 -31726900 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1847 2548 105 102 47 chr1 165470198 165470648 -31724784 - MT2C_Mm LTR ERVL 0 475 1 6 1847 446 88 15 0 chr1 165471234 165471302 -31724130 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1847 4158 53 0 2 chr1 165471374 165471884 -31723548 + L1Md_F2 LINE L1 6074 6582 0 6 1847 768 294 63 36 chr1 165472485 165473013 -31722419 - L1MA4A LINE L1 -385 5918 5345 6 1847 1172 70 6 0 chr1 165473294 165473450 -31721982 + B2_Mm1a SINE B2 3 159 -34 6 1847 267 31 0 0 chr1 165473450 165473482 -31721950 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 6 1847 594 75 0 0 chr1 165474067 165474147 -31721285 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 6 1847 5509 109 31 4 chr1 165475363 165476300 -31719132 + L1Md_F2 LINE L1 369 1334 -5390 6 1847 14142 70 0 1 chr1 165476281 165478215 -31717217 + L1Md_F2 LINE L1 3654 5585 -298 6 1847 7667 66 4 2 chr1 165478216 165479207 -31716225 + L1Md_F2 LINE L1 5587 6579 -3 6 1847 21 36 0 0 chr1 165479453 165479481 -31715951 + AT_rich Low_complexity Low_complexity 1 28 0 6 1847 490 321 37 5 chr1 165479875 165480066 -31715366 + RMER30 DNA MER1_type 5 201 -1 6 1847 192 364 34 11 chr1 165480161 165480250 -31715182 + MIR SINE MIR 66 156 -106 6 1847 657 181 21 32 chr1 165480463 165480651 -31714781 + L1MA4 LINE L1 6052 6237 -63 6 1847 35 24 0 0 chr1 165480680 165480722 -31714710 + AT_rich Low_complexity Low_complexity 1 42 0 6 1847 963 305 51 27 chr1 165481434 165481808 -31713624 - MER82 DNA MER2_type -221 432 50 7 1847 475 325 151 49 chr1 165481866 165482182 -31713250 + ORR1D2 LTR MaLR 6 354 -16 7 1847 996 283 69 80 chr1 165482182 165482558 -31712874 + MTE2a LTR MaLR 4 375 -4 7 1847 400 233 44 99 chr1 165483279 165483460 -31711972 - Lx4B LINE L1 -1 7057 6887 7 1847 4350 154 44 7 chr1 165483457 165484270 -31711162 - Lx4B LINE L1 -628 6430 5588 7 1847 1213 160 0 123 chr1 165484257 165484557 -31710875 + Lx4B LINE L1 5319 5581 -296 7 1847 669 86 0 0 chr1 165485282 165485375 -31710057 + (TC)n Simple_repeat Simple_repeat 1 93 0 7 1847 227 324 46 37 chr1 165485607 165485716 -31709716 + LTR16C LTR ERVL 1 110 -379 7 1847 205 156 0 0 chr1 165486024 165486056 -31709376 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1847 1027 151 5 32 chr1 165486375 165486560 -31708872 + URR1B DNA MER1_type 46 225 0 7 1847 232 310 224 7 chr1 165492463 165492606 -31702826 - MIR SINE MIR -3 259 86 7 1847 555 310 106 102 chr1 165492704 165492988 -31702444 + B4 SINE B4 4 288 -4 7 1847 336 83 0 0 chr1 165492995 165493043 -31702389 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1847 661 265 36 45 chr1 165493305 165493520 -31701912 + B3A SINE B2 1 216 0 7 1847 230 327 57 0 chr1 165493538 165493697 -31701735 - L1MA8 LINE L1 -25 6266 6099 7 1847 585 374 86 28 chr1 165495159 165495591 -31699841 - MT2A LTR ERVL -76 457 1 7 1847 324 0 0 0 chr1 165495894 165495930 -31699502 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1847 6770 17 0 0 chr1 165495949 165496761 -31698671 - L1Md_F2 LINE L1 0 5883 5072 7 1847 5542 51 1 7 chr1 165496761 165497458 -31697974 + L1Md_F2 LINE L1 5889 6581 -1 7 1847 306 267 91 41 chr1 165497516 165497637 -31697795 + MLT1A1 LTR MaLR 247 373 -35 7 1847 1494 292 48 13 chr1 165498081 165498559 -31696873 - RMER5 LTR ERV1 0 534 40 7 1847 2478 223 18 21 chr1 165499005 165499572 -31695860 - Lx6 LINE L1 -13 7447 6883 7 1847 441 0 0 0 chr1 165499572 165499621 -31695811 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1847 1159 191 91 12 chr1 165499626 165499914 -31695518 - Lx6 LINE L1 -573 6887 6450 7 1847 1927 22 5 0 chr1 165500205 165500428 -31695004 + L1_Mus1 LINE L1 6338 6561 -6 1 1847 258 179 0 0 chr1 165500639 165500695 -31694737 + GA-rich Low_complexity Low_complexity 3 58 0 2 1847 261 0 0 0 chr1 165501016 165501045 -31694387 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1847 368 252 25 59 chr1 165502833 165502951 -31692481 + B1F SINE Alu 36 149 0 4 1847 325 177 0 25 chr1 165502985 165503066 -31692366 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1847 2422 193 186 12 chr1 165503069 165503179 -31692253 - RMER1B Other Other -12 1054 919 6 1847 317 62 0 20 chr1 165503179 165503228 -31692204 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 7 1847 2422 199 180 11 chr1 165503228 165503810 -31691622 - RMER1B Other Other -148 918 191 6 1847 189 0 0 0 chr1 165505556 165505577 -31689855 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1847 238 316 0 13 chr1 165506480 165506557 -31688875 + CT-rich Low_complexity Low_complexity 2 77 0 9 1847 299 83 27 40 chr1 165507158 165507233 -31688199 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 1847 912 90 25 13 chr1 165507272 165507430 -31688002 - L1_Mus3 LINE L1 0 6638 6479 1 1847 262 305 58 47 chr1 165507778 165507864 -31687568 - B1F SINE Alu -59 90 4 1 1847 486 96 0 0 chr1 165507870 165507943 -31687489 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1847 295 315 62 16 chr1 165507943 165508072 -31687360 - ID_B1 SINE B4 -12 212 78 1 1847 831 257 48 90 chr1 165508563 165509073 -31686359 + RLTR12B LTR ERVK 41 515 -13 1 1847 797 295 56 45 chr1 165509668 165510005 -31685427 - Lx6 LINE L1 -24 7436 7096 1 1847 1889 155 24 45 chr1 165510005 165510383 -31685049 - ORR1B1 LTR MaLR 0 394 25 1 1847 648 249 9 69 chr1 165510390 165510606 -31684826 - Lx6 LINE L1 -365 6685 6483 1 1847 6464 240 76 81 chr1 165510603 165514929 -31680503 - Lx6 LINE L1 -688 6362 2070 1 1847 201 94 0 0 chr1 165514929 165514961 -31680471 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1847 6464 224 58 79 chr1 165514961 165516159 -31679273 - Lx6 LINE L1 -3808 2069 906 1 1847 864 269 68 28 chr1 165516780 165517208 -31678224 - L1M4 LINE L1 -1671 4475 4031 2 1847 549 259 70 11 chr1 165517366 165517553 -31677879 + MER45B DNA Tip100 713 910 -130 2 1847 368 240 20 114 chr1 165517818 165518006 -31677426 + B3A SINE B2 32 195 0 2 1847 588 334 66 15 chr1 165518262 165518623 -31676809 + MLT1I LTR MaLR 1 425 -23 2 1847 622 194 144 41 chr1 165518673 165518867 -31676565 - B3 SINE B2 0 216 3 2 1847 210 277 43 0 chr1 165518890 165518937 -31676495 - ID4_ SINE ID -6 77 29 2 1847 525 251 112 100 chr1 165519189 165519632 -31675800 + RLTR11B LTR ERVK 1 482 -46 2 1847 1044 259 69 25 chr1 165519761 165519940 -31675492 - Lx7 LINE L1 -1535 5938 5727 2 1847 303 49 0 0 chr1 165519940 165519981 -31675451 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1847 1044 262 58 24 chr1 165519981 165520239 -31675193 - Lx7 LINE L1 -121 5726 5459 2 1847 423 0 0 0 chr1 165520973 165521020 -31674412 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1847 414 57 0 0 chr1 165521495 165521548 -31673884 + (T)n Simple_repeat Simple_repeat 1 53 0 3 1847 2745 200 53 8 chr1 165522080 165522741 -31672691 - Lx9 LINE L1 -1 7643 6953 3 1847 355 154 0 15 chr1 165522740 165522806 -31672626 + Lx9 LINE L1 6856 6920 -724 3 1847 1729 189 65 20 chr1 165523429 165523780 -31671652 - ORR1B2 LTR MaLR 0 367 1 3 1847 180 0 0 0 chr1 165524300 165524320 -31671112 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1847 313 253 70 35 chr1 165525163 165525249 -31670183 - L2a LINE L2 0 3426 3338 3 1847 523 242 144 27 chr1 165525779 165525966 -31669466 - RMER15 LTR ERVL -15 560 352 3 1847 339 296 104 21 chr1 165527801 165527994 -31667438 + L1MD3 LINE L1 6884 7092 -693 3 1847 478 304 79 52 chr1 165528171 165528501 -31666931 + L1MD3 LINE L1 7490 7828 -167 3 1847 3818 52 2 0 chr1 165528549 165529053 -31666379 - L1_Mm LINE L1 -756 5127 4623 3 1847 3438 62 11 29 chr1 165529055 165529341 -31666091 + L1Md_F2 LINE L1 6112 6395 -187 3 1847 2809 35 48 8 chr1 165529341 165529692 -31665740 + RLTR10B2 LTR ERVK 1 365 0 3 1847 3438 62 11 29 chr1 165529692 165529883 -31665549 + L1Md_F2 LINE L1 6396 6580 -2 3 1847 406 239 58 25 chr1 165531121 165531241 -31664191 + MIR SINE MIR 18 141 -121 4 1847 197 282 27 50 chr1 165531412 165531504 -31663928 - L2a LINE L2 -37 3389 3281 4 1847 356 313 14 75 chr1 165532792 165532923 -31662509 - PB1D10 SINE Alu -2 147 14 4 1847 23 0 0 0 chr1 165533606 165533629 -31661803 + AT_rich Low_complexity Low_complexity 1 23 0 4 1847 683 267 10 31 chr1 165534050 165534243 -31661189 - B3A SINE B2 -5 193 5 4 1847 417 20 0 0 chr1 165534427 165534477 -31660955 + (TTA)n Simple_repeat Simple_repeat 1 50 0 4 1847 4661 170 19 14 chr1 165535376 165536179 -31659253 + Lx5 LINE L1 6244 7050 0 4 1847 306 132 0 0 chr1 165536744 165536797 -31658635 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 4 1847 457 241 60 27 chr1 165537026 165537175 -31658257 + MTE2a LTR MaLR 226 379 0 4 1847 606 39 0 0 chr1 165539223 165539300 -31656132 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1847 1111 164 332 60 chr1 165541087 165541418 -31654014 - MTC LTR MaLR 0 421 1 5 1847 987 269 162 6 chr1 165543133 165543447 -31651985 - MLT1A0 LTR MaLR 0 365 3 5 1848 275 320 103 0 chr1 165544157 165544254 -31651178 - MLT1A1 LTR MaLR -253 155 49 5 1848 1389 346 116 25 chr1 165544278 165545205 -31650227 - L2a LINE L2 -153 3273 2259 5 1848 272 258 0 0 chr1 165545290 165545367 -31650065 + L1MA5 LINE L1 5831 5928 -372 5 1848 23 33 0 0 chr1 165545604 165545634 -31649798 + AT_rich Low_complexity Low_complexity 1 30 0 5 1848 1098 95 107 6 chr1 165545708 165545877 -31649555 - B2_Mm2 SINE B2 -6 189 4 5 1848 457 226 80 0 chr1 165546086 165546223 -31649209 + Lx9 LINE L1 6957 7104 -540 5 1848 405 0 0 0 chr1 165546469 165546514 -31648918 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1848 519 17 0 0 chr1 165546596 165546656 -31648776 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1848 206 324 76 0 chr1 165546760 165546865 -31648567 - L2a LINE L2 -1606 1813 1701 5 1848 226 260 0 0 chr1 165546893 165546943 -31648489 + L1_Mur2 LINE L1 5471 5520 -357 6 1848 245 314 77 6 chr1 165546947 165547117 -31648315 + L1M1 LINE L1 5592 5773 -530 6 1848 240 59 0 0 chr1 165547157 165547191 -31648241 + (CAGAGA)n Simple_repeat Simple_repeat 6 39 0 6 1848 214 417 0 0 chr1 165548117 165548201 -31647231 - MIR3 SINE MIR -124 84 1 6 1848 23 33 0 0 chr1 165548803 165548833 -31646599 + AT_rich Low_complexity Low_complexity 1 30 0 6 1848 390 253 0 12 chr1 165548933 165549017 -31646415 - ID4_ SINE ID 0 83 1 6 1848 351 244 0 118 chr1 165549400 165549493 -31645939 - RSINE1 SINE B4 0 165 84 6 1848 253 277 96 0 chr1 165549545 165549639 -31645793 - MIRb SINE MIR -43 225 123 6 1848 229 329 39 13 chr1 165550151 165550228 -31645204 - MIR SINE MIR -182 80 2 6 1848 221 222 0 53 chr1 165551252 165551347 -31644085 + A-rich Low_complexity Low_complexity 1 90 0 6 1848 10423 67 11 29 chr1 165551891 165552726 -31642706 + MusHAL1 LINE L1 1166 2008 -704 6 1848 2274 44 0 0 chr1 165552726 165553000 -31642432 + L1_Mus1 LINE L1 6294 6567 0 7 1848 10423 67 11 29 chr1 165553000 165553735 -31641697 + MusHAL1 LINE L1 2009 2708 -4 6 1848 392 118 0 14 chr1 165555017 165555086 -31640346 + (GGA)n Simple_repeat Simple_repeat 3 70 0 7 1848 4529 135 62 53 chr1 165557916 165558806 -31636626 - RLTR13D6 LTR ERVK -32 870 1 7 1848 243 263 152 55 chr1 165558953 165559098 -31636334 - MLT1G1 LTR MaLR -1 488 330 7 1848 448 314 63 67 chr1 165559159 165559412 -31636020 - MLT1G1 LTR MaLR -327 252 1 7 1848 469 312 94 52 chr1 165559740 165560007 -31635425 - MLT1C LTR MaLR -187 280 3 7 1848 3516 49 0 14 chr1 165561101 165561514 -31633918 + MTB_Mm LTR MaLR 1 407 0 7 1848 289 330 109 50 chr1 165561893 165562047 -31633385 + MIR SINE MIR 10 175 -87 7 1848 551 278 124 23 chr1 165562047 165562189 -31633243 + B3A SINE B2 4 160 -38 7 1848 270 0 0 0 chr1 165562189 165562219 -31633213 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1848 180 0 0 0 chr1 165562219 165562238 -31633194 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1848 360 0 0 0 chr1 165562238 165562277 -31633155 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1848 551 278 124 23 chr1 165562277 165562309 -31633123 + B3A SINE B2 161 196 -2 7 1848 289 330 109 50 chr1 165562309 165562393 -31633039 + MIR SINE MIR 176 262 0 7 1848 985 208 68 15 chr1 165562511 165562716 -31632716 + B3 SINE B2 1 216 0 8 1848 599 280 96 13 chr1 165562827 165563066 -31632366 - L1MA8 LINE L1 -205 6086 5828 8 1848 1709 217 94 31 chr1 165563071 165563528 -31631904 - RMER19C LTR ERVK 0 611 126 8 1848 7998 30 4 0 chr1 165563621 165564544 -31630888 - L1Md_T LINE L1 -2 6580 5654 8 1848 428 164 27 0 chr1 165564590 165564663 -31630769 - ORR1E LTR MaLR -5 374 300 8 1848 653 204 93 69 chr1 165564663 165564879 -31630553 + Lx7 LINE L1 7476 7696 0 8 1848 24 0 0 0 chr1 165565068 165565092 -31630340 + AT_rich Low_complexity Low_complexity 1 24 0 8 1848 275 252 139 44 chr1 165565669 165565806 -31629626 - L1MC5 LINE L1 -61 7900 7751 8 1848 515 140 0 53 chr1 165566017 165566168 -31629264 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 8 1848 532 282 181 28 chr1 165566176 165566370 -31629062 - ORR1E LTR MaLR -167 192 1 8 1848 673 268 86 70 chr1 165566376 165566677 -31628755 - L1MA8 LINE L1 -569 5743 5438 8 1848 187 248 0 40 chr1 165566705 165566831 -31628601 + (TG)n Simple_repeat Simple_repeat 2 122 0 9 1848 185 94 0 30 chr1 165566877 165566910 -31628522 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1848 484 307 0 30 chr1 165566935 165567066 -31628366 - RSINE1 SINE B4 -21 144 18 9 1848 1041 285 146 25 chr1 165567083 165567775 -31627657 - L1MA8 LINE L1 -861 5439 4654 8 1848 411 309 32 16 chr1 165567939 165568064 -31627368 - PB1 SINE Alu 0 127 1 9 1848 195 184 0 0 chr1 165568506 165568544 -31626888 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1848 308 273 26 53 chr1 165568734 165568885 -31626547 + GA-rich Low_complexity Low_complexity 4 150 0 9 1848 2536 259 97 6 chr1 165569739 165570423 -31625009 + Lx8 LINE L1 6727 7472 -1 9 1848 1131 219 153 45 chr1 165571894 165572228 -31623204 + ORR1D2 LTR MaLR 1 370 0 9 1848 430 336 73 69 chr1 165574179 165574425 -31621007 + Charlie2b DNA MER1_type 69 315 -2467 9 1848 297 328 130 20 chr1 165574767 165575066 -31620366 + Charlie2b DNA MER1_type 2437 2768 -14 9 1848 3427 76 18 2 chr1 165575425 165575862 -31619570 + L1_Mus4 LINE L1 6193 6636 0 9 1848 483 18 0 0 chr1 165576004 165576060 -31619372 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1848 3362 229 115 58 chr1 165576642 165578254 -31617178 + RMER1A Other Other 6 894 -136 1 1848 213 39 0 0 chr1 165578254 165578280 -31617152 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1 1848 3362 186 181 97 chr1 165578280 165578404 -31617028 + RMER1A Other Other 895 1028 -2 1 1848 764 333 93 32 chr1 165578810 165579580 -31615852 + Arthur1B DNA Tip100 109 953 -272 1 1848 288 265 184 0 chr1 165579580 165579678 -31615754 + MTE2b LTR MaLR 7 122 -257 1 1848 288 0 0 0 chr1 165579924 165579956 -31615476 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1848 4064 71 4 4 chr1 165580017 165580514 -31614918 - L1Md_F2 LINE L1 0 6582 6086 1 1848 388 379 88 53 chr1 165581700 165582018 -31613414 - ORR1E LTR MaLR -9 350 22 1 1848 5973 48 1 0 chr1 165582327 165583033 -31612399 - L1Md_F LINE L1 -5501 1018 312 1 1848 663 164 14 14 chr1 165583067 165583215 -31612217 + GA-rich Low_complexity Low_complexity 3 150 0 1 1848 357 375 35 0 chr1 165583437 165583581 -31611851 - LTR33 LTR ERVL -287 228 80 1 1848 454 321 120 9 chr1 165584338 165584555 -31610877 + MIR SINE MIR 10 250 -12 1 1848 770 58 0 9 chr1 165584853 165584958 -31610474 + (GAA)n Simple_repeat Simple_repeat 2 105 0 1 1848 29 28 0 0 chr1 165585054 165585090 -31610342 + AT_rich Low_complexity Low_complexity 1 36 0 1 1848 968 192 3 0 chr1 165585262 165585580 -31609852 + (TG)n Simple_repeat Simple_repeat 1 319 0 1 1848 369 246 40 101 chr1 165585981 165586120 -31609312 + L1MA9 LINE L1 6110 6238 -74 1 1848 1044 133 0 0 chr1 165586120 165586300 -31609132 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1848 369 246 40 101 chr1 165586300 165586359 -31609073 + L1MA9 LINE L1 6239 6296 -16 1 1848 251 256 11 0 chr1 165586580 165586670 -31608762 + CT-rich Low_complexity Low_complexity 3 93 0 1 1848 236 274 0 16 chr1 165587633 165587696 -31607736 + GA-rich Low_complexity Low_complexity 2 63 0 1 1848 356 313 46 33 chr1 165587696 165587848 -31607584 + HAL1-3A_ME LINE L1 2284 2437 -421 1 1848 267 54 0 0 chr1 165588186 165588223 -31607209 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1848 198 0 0 0 chr1 165588224 165588246 -31607186 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 1 1848 775 256 56 31 chr1 165589253 165589539 -31605893 - L1MA7 LINE L1 -62 6229 5937 1 1848 343 230 49 20 chr1 165589540 165589642 -31605790 + L1MA7 LINE L1 5838 5942 -370 1 1848 288 194 103 15 chr1 165589790 165589858 -31605574 - MER53 DNA hAT -12 181 108 1 1848 220 286 12 49 chr1 165590971 165591052 -31604380 + MIRc SINE MIR 124 201 -67 1 1848 296 273 31 130 chr1 165591537 165591715 -31603717 - MIR SINE MIR -88 174 16 1 1848 1340 163 14 0 chr1 165592123 165592344 -31603088 - URR1B DNA MER1_type 0 225 2 1 1848 22 0 0 0 chr1 165592595 165592617 -31602815 + AT_rich Low_complexity Low_complexity 1 22 0 1 1848 760 236 125 11 chr1 165592909 165593093 -31602339 - B3 SINE B2 -10 206 2 1 1848 27 0 0 0 chr1 165593143 165593170 -31602262 + AT_rich Low_complexity Low_complexity 1 27 0 1 1848 4355 181 121 17 chr1 165593291 165594230 -31601202 - Lx9 LINE L1 -1 7643 6608 1 1848 216 286 107 100 chr1 165594231 165594281 -31601151 - B3A SINE B2 -56 142 2 1 1848 373 267 33 0 chr1 165594281 165594371 -31601061 - B4 SINE B4 -198 94 2 1 1848 216 0 0 0 chr1 165594660 165594684 -31600748 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1 1848 809 276 0 17 chr1 165594685 165594858 -31600574 - B3 SINE B2 -30 186 17 1 1848 23 68 0 0 chr1 165595295 165595339 -31600093 + AT_rich Low_complexity Low_complexity 1 44 0 1 1848 244 347 102 0 chr1 165595816 165595914 -31599518 - MER58B DNA MER1_type 0 341 234 1 1848 264 154 0 0 chr1 165596360 165596412 -31599020 + GA-rich Low_complexity Low_complexity 1 52 0 1 1848 277 328 103 71 chr1 165597208 165597490 -31597942 - LTR81B LTR ERV1? -1099 294 4 1 1848 6869 71 1 5 chr1 165598811 165599720 -31595712 + L1_Mus1 LINE L1 5701 6567 0 1 1848 483 100 0 0 chr1 165599733 165599803 -31595629 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1848 234 0 0 0 chr1 165599803 165599828 -31595604 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1848 202 235 39 0 chr1 165600433 165600484 -31594948 - L2b LINE L2 -14 3361 3309 1 1848 516 16 0 0 chr1 165600562 165600623 -31594809 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1848 317 157 51 17 chr1 165600628 165600745 -31594687 + (CAGAGA)n Simple_repeat Simple_repeat 4 124 0 1 1848 1201 176 40 36 chr1 165601360 165601584 -31593848 + URR1B DNA MER1_type 1 225 0 1 1848 242 125 0 48 chr1 165602407 165602449 -31592983 + MT2B LTR ERVL 3 42 -559 1 1848 235 290 113 0 chr1 165603346 165603408 -31592024 + ID4_ SINE ID 6 74 -9 1 1848 489 217 42 86 chr1 165604010 165604243 -31591189 + MT2B LTR ERVL 1 320 -281 1 1848 1882 236 87 12 chr1 165605084 165605568 -31589864 - Lx2B LINE L1 -1 6999 6480 1 1848 2787 28 2 259 chr1 165605569 165606094 -31589338 - RLTR10 LTR ERVK 0 390 1 1 1848 15859 28 9 53 chr1 165606096 165608128 -31587304 - RLTR10-int LTR ERVK -3 1984 41 1 1848 2787 28 2 259 chr1 165608138 165608663 -31586769 - RLTR10 LTR ERVK 0 390 1 1 1848 1530 179 57 4 chr1 165608663 165608943 -31586489 - Lx4B LINE L1 -573 6485 6191 1 1848 311 232 78 78 chr1 165609032 165609135 -31586297 - MTEb LTR MaLR -271 108 6 1 1848 285 345 59 12 chr1 165609268 165609438 -31585994 + MIR SINE MIR 53 230 -32 1 1848 1329 81 0 8 chr1 165610773 165611038 -31584394 + (GGA)n Simple_repeat Simple_repeat 1 262 0 1 1848 421 329 70 44 chr1 165611038 165611267 -31584165 + MLT1L LTR MaLR 285 519 -91 1 1848 248 268 11 44 chr1 165611966 165612056 -31583376 + GA-rich Low_complexity Low_complexity 2 88 0 1 1848 365 205 8 24 chr1 165613783 165613908 -31581524 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1848 209 309 12 24 chr1 165613922 165614005 -31581427 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1848 397 254 18 18 chr1 165614018 165614309 -31581123 + (TG)n Simple_repeat Simple_repeat 1 291 0 1 1848 372 211 19 25 chr1 165614311 165614471 -31580961 + (TATG)n Simple_repeat Simple_repeat 4 162 0 1 1848 419 100 14 0 chr1 165614520 165614590 -31580842 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1848 522 225 72 0 chr1 165614954 165615065 -31580367 + RSINE1 SINE B4 9 127 -38 1 1848 216 0 0 0 chr1 165615070 165615094 -31580338 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1848 394 18 18 18 chr1 165615096 165615152 -31580280 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1 1848 249 33 0 0 chr1 165616436 165616466 -31578966 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1848 745 162 12 0 chr1 165616896 165617069 -31578363 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1848 223 104 42 0 chr1 165617070 165617118 -31578314 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1848 698 277 39 11 chr1 165617166 165617345 -31578087 - B4 SINE B4 -98 194 11 1 1848 2006 163 31 3 chr1 165617891 165618248 -31577184 - RLTR14 LTR ERV1 0 382 16 1 1848 434 174 14 0 chr1 165619920 165619989 -31575443 - ID4_ SINE ID -13 70 1 1 1848 186 338 63 25 chr1 165620020 165620099 -31575333 - MIRm SINE MIR -2 274 193 1 1848 3900 55 19 2 chr1 165620153 165620625 -31574807 - L1Md_F3 LINE L1 0 6584 6105 1 1848 191 267 67 0 chr1 165620926 165620971 -31574461 + L2b LINE L2 3286 3333 -42 1 1848 327 282 0 34 chr1 165621129 165621217 -31574215 - B1F2 SINE Alu -32 117 33 1 1848 323 316 8 81 chr1 165621196 165621320 -31574112 - B1F1 SINE Alu -34 115 1 1 1848 33 25 0 0 chr1 165621676 165621716 -31573716 + AT_rich Low_complexity Low_complexity 1 40 0 1 1848 513 0 0 0 chr1 165621741 165621798 -31573634 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 1848 1996 50 37 4 chr1 165622480 165622722 -31572710 + L1_Mus1 LINE L1 6318 6567 0 1 1848 2709 253 29 29 chr1 165623016 165623098 -31572334 - Lx7 LINE L1 -665 7031 6950 1 1848 3346 11 5 11 chr1 165623098 165623467 -31571965 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1848 2709 253 29 29 chr1 165623467 165624137 -31571295 - Lx7 LINE L1 -747 6949 6279 1 1848 1233 271 41 6 chr1 165624139 165624454 -31570978 + Lx7 LINE L1 7043 7368 -328 1 1848 369 0 0 0 chr1 165624477 165624518 -31570914 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1848 39 22 0 0 chr1 165624830 165624876 -31570556 + AT_rich Low_complexity Low_complexity 1 46 0 1 1848 956 143 65 16 chr1 165625734 165625919 -31569513 - Lx2A1 LINE L1 -3 7005 6812 1 1848 742 287 132 15 chr1 165626152 165626424 -31569008 + Lx8 LINE L1 7165 7468 -5 1 1848 390 91 0 0 chr1 165626883 165626938 -31568494 + (TAG)n Simple_repeat Simple_repeat 2 56 0 1 1848 296 297 126 48 chr1 165627401 165627631 -31567801 + ORR1D2 LTR MaLR 90 337 -33 1 1848 256 375 69 78 chr1 165627679 165628232 -31567200 + L2a LINE L2 2177 2724 -695 1 1848 373 284 52 7 chr1 165628425 165628560 -31566872 + L2a LINE L2 2732 2872 -547 1 1848 368 301 237 27 chr1 165628582 165628992 -31566440 + L2a LINE L2 2924 3419 -7 1 1848 22 0 0 0 chr1 165630528 165630550 -31564882 + AT_rich Low_complexity Low_complexity 1 22 0 1 1848 219 36 0 0 chr1 165630610 165630638 -31564794 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1848 250 222 0 27 chr1 165631916 165631990 -31563442 + (TTA)n Simple_repeat Simple_repeat 3 74 0 1 1848 189 0 0 0 chr1 165633693 165633714 -31561718 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1848 609 110 0 0 chr1 165633714 165633805 -31561627 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 1848 21 0 0 0 chr1 165635111 165635132 -31560300 + AT_rich Low_complexity Low_complexity 1 21 0 1 1848 5063 195 27 3 chr1 165636274 165637211 -31558221 + Lx5 LINE L1 5937 6895 -155 1 1848 868 177 80 47 chr1 165637581 165637794 -31557638 - URR1A DNA MER1_type -2 224 5 1 1848 320 277 169 33 chr1 165639167 165639350 -31556082 + MIRc SINE MIR 24 231 -37 1 1848 199 370 69 37 chr1 165639897 165640085 -31555347 - MIR SINE MIR -11 251 58 1 1848 5617 160 24 31 chr1 165640205 165641314 -31554118 + L1Md_T LINE L1 104 1205 -5411 1 1848 37201 32 0 0 chr1 165641320 165645737 -31549695 + L1Md_T LINE L1 1170 5586 -297 1 1848 8602 53 0 0 chr1 165645737 165646733 -31548699 + L1Md_T LINE L1 5587 6582 0 1 1848 225 0 0 0 chr1 165647509 165647534 -31547898 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 1 1848 849 193 0 0 chr1 165647536 165647671 -31547761 - B1_Mur2 SINE Alu -13 136 2 1 1848 264 232 76 53 chr1 165648344 165648476 -31546956 + MER53 DNA hAT 32 166 -27 1 1848 261 0 0 0 chr1 165649423 165649452 -31545980 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1848 242 288 34 0 chr1 165649460 165649519 -31545913 - RSINE1 SINE B4 -103 62 2 2 1848 1105 92 0 75 chr1 165650053 165650241 -31545191 - MTC LTR MaLR -54 367 194 2 1848 231 305 82 25 chr1 165651438 165651596 -31543836 + MIR SINE MIR 45 211 -51 2 1848 988 147 0 20 chr1 165653219 165653372 -31542060 + B1_Mur4 SINE Alu 1 150 0 2 1848 279 0 0 0 chr1 165654551 165654582 -31540850 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1848 270 0 0 0 chr1 165656215 165656245 -31539187 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 2 1848 758 299 105 57 chr1 165656363 165656696 -31538736 - MLT1A LTR MaLR -11 363 15 2 1848 843 221 6 11 chr1 165657216 165657390 -31538042 + RMER30 DNA MER1_type 5 177 -25 2 1848 701 279 80 45 chr1 165657403 165657602 -31537830 - B3A SINE B2 -10 206 1 2 1848 331 286 114 64 chr1 165657618 165657820 -31537612 + MIRb SINE MIR 40 251 -17 2 1848 1116 95 0 33 chr1 165658199 165658214 -31537218 - B1_Mm SINE Alu 0 147 137 2 1848 180 0 0 0 chr1 165658214 165658234 -31537198 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1848 1116 95 0 33 chr1 165658234 165658370 -31537062 - B1_Mm SINE Alu -11 136 1 2 1848 1436 95 0 11 chr1 165658370 165658560 -31536872 - B2_Mm2 SINE B2 -5 190 2 2 1848 225 235 39 0 chr1 165658561 165658612 -31536820 - RMER30 DNA MER1_type -127 75 23 2 1848 207 133 0 0 chr1 165659406 165659451 -31535981 + (A)n Simple_repeat Simple_repeat 1 45 0 2 1848 414 230 0 74 chr1 165659461 165659583 -31535849 - Lx2B LINE L1 -1 6999 6887 2 1848 21 89 0 0 chr1 165661028 165661084 -31534348 + AT_rich Low_complexity Low_complexity 1 56 0 2 1848 252 277 11 46 chr1 165661119 165661206 -31534226 + LTR75 LTR ERVL 460 543 -19 2 1848 4384 65 47 0 chr1 165661275 165661810 -31533622 - LTRIS2 LTR ERV1 0 564 5 2 1848 206 157 39 19 chr1 165661884 165661936 -31533496 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 2 1848 594 267 0 0 chr1 165662697 165662832 -31532600 + B1F1 SINE Alu 13 147 -2 2 1848 261 0 0 0 chr1 165662846 165662875 -31532557 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1848 898 279 88 101 chr1 165663171 165663558 -31531874 + MTD LTR MaLR 2 383 -36 2 1848 242 341 0 0 chr1 165663888 165663986 -31531446 - MIRc SINE MIR -108 160 66 2 1848 316 335 43 18 chr1 165664240 165664404 -31531028 + L1M3e LINE L1 61 228 -6802 2 1848 465 248 15 101 chr1 165665671 165665866 -31529566 - MER3 DNA MER1_type -40 169 1 2 1848 3193 108 14 37 chr1 165668217 165668729 -31526703 + Lx3_Mus LINE L1 6510 7009 0 2 1848 333 0 0 0 chr1 165669369 165669406 -31526026 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1848 333 0 0 0 chr1 165669556 165669593 -31525839 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1848 369 0 0 0 chr1 165669609 165669650 -31525782 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1848 185 272 72 105 chr1 165669700 165669852 -31525580 - L2 LINE L2 -508 2911 2765 2 1848 484 343 118 32 chr1 165670082 165670577 -31524855 + L2a LINE L2 2694 3225 -201 2 1848 973 154 32 78 chr1 165670611 165670829 -31524603 + ORR1A4 LTR MaLR 1 208 -121 2 1848 728 135 279 0 chr1 165671063 165671177 -31524255 + Lx9 LINE L1 7360 7477 -167 2 1848 647 69 10 0 chr1 165671177 165671279 -31524153 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 1848 728 135 279 0 chr1 165671279 165671386 -31524046 + Lx9 LINE L1 7478 7642 -2 2 1848 1723 198 13 39 chr1 165673049 165673433 -31521999 - ORR1D1 LTR MaLR 0 374 1 2 1848 789 199 20 0 chr1 165673466 165673612 -31521820 + B1_Mur4 SINE Alu 1 149 -1 2 1848 324 310 46 8 chr1 165673621 165673751 -31521681 + HAL1 LINE L1 2077 2211 -296 2 1848 348 286 0 0 chr1 165673873 165673964 -31521468 + Lx8 LINE L1 6476 6566 -907 2 1848 2041 258 37 57 chr1 165674066 165674798 -31520634 + Lx8 LINE L1 6753 7469 -4 2 1849 1091 282 77 3 chr1 165675744 165676071 -31519361 + ORR1E LTR MaLR 4 354 -5 2 1849 185 372 12 0 chr1 165676605 165676691 -31518741 - MIRb SINE MIR -103 165 79 2 1849 306 301 41 3 chr1 165677280 165677451 -31517981 + L1M4 LINE L1 3736 3912 -2234 2 1849 366 298 71 12 chr1 165677684 165677939 -31517493 + L1M4 LINE L1 4239 4508 -1638 2 1849 201 154 0 0 chr1 165678227 165678266 -31517166 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1849 512 277 43 18 chr1 165678501 165678895 -31516537 + L1M4 LINE L1 4899 5292 -854 2 1849 253 270 49 35 chr1 165678936 165679078 -31516354 + L1M4 LINE L1 5364 5507 -657 2 1849 589 235 151 0 chr1 165679345 165679511 -31515921 - Lx6 LINE L1 -211 7249 7059 2 1849 1202 199 14 65 chr1 165679642 165679996 -31515436 + Lx7 LINE L1 7357 7692 -4 2 1849 600 116 0 0 chr1 165680103 165680198 -31515234 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1849 535 271 45 0 chr1 165680205 165680338 -31515094 - RSINE1 SINE B4 -25 140 2 2 1849 23 33 0 0 chr1 165680454 165680484 -31514948 + AT_rich Low_complexity Low_complexity 1 30 0 2 1849 607 254 123 11 chr1 165680637 165680824 -31514608 + B3 SINE B2 4 211 -5 2 1849 222 344 0 75 chr1 165681746 165681853 -31513579 + L2c LINE L2 3272 3370 -17 2 1849 438 101 0 0 chr1 165681853 165681922 -31513510 + (GCTG)n Simple_repeat Simple_repeat 2 70 0 2 1849 5909 42 11 8 chr1 165682180 165682984 -31512448 - L1Md_F2 LINE L1 0 6582 5796 2 1849 788 251 47 21 chr1 165683089 165683280 -31512152 - B3A SINE B2 -2 196 1 2 1849 896 252 86 87 chr1 165683782 165684086 -31511346 - B4 SINE B4 0 292 8 2 1849 399 21 0 0 chr1 165684086 165684134 -31511298 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1849 247 283 0 0 chr1 165684156 165684209 -31511223 + ID4 SINE ID 21 73 -10 2 1849 411 21 0 0 chr1 165684209 165684257 -31511175 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1849 619 338 51 80 chr1 165684433 165684822 -31510610 + MLT1B LTR MaLR 11 388 -2 2 1849 304 353 36 71 chr1 165686417 165686585 -31508847 - MER74C LTR ERVL -227 233 72 2 1849 767 247 6 0 chr1 165688659 165688821 -31506611 - RSINE1 SINE B4 0 165 3 2 1849 438 20 0 0 chr1 165689372 165689423 -31506009 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1849 534 265 53 37 chr1 165689443 165689686 -31505746 + L1MA5 LINE L1 4004 4250 -1893 2 1849 561 295 147 3 chr1 165690101 165690482 -31504950 + L1MA5 LINE L1 5819 6254 -46 2 1849 183 80 0 0 chr1 165690781 165690806 -31504626 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 2 1849 25273 124 50 32 chr1 165692576 165695106 -31500326 - Lx4A LINE L1 -60 6998 4337 2 1849 858 129 0 0 chr1 165695106 165695246 -31500186 + (TTCC)n Simple_repeat Simple_repeat 2 141 0 2 1849 25273 120 21 48 chr1 165695246 165695311 -31500121 - L1_Mur2 LINE L1 -1541 4336 4336 2 1849 1172 62 0 0 chr1 165695311 165695456 -31499976 - B1_Mus1 SINE Alu -1 147 3 2 1849 25273 122 38 44 chr1 165695456 165698983 -31496449 - Lx4A LINE L1 -1541 4336 822 2 1849 1061 80 7 0 chr1 165699116 165699253 -31496179 - B1_Mus2 SINE Alu -9 138 1 2 1849 1880 139 10 13 chr1 165699262 165699575 -31495857 - Lx2 LINE L1 0 6997 6686 2 1849 514 369 82 65 chr1 165699614 165700089 -31495343 + MLT1D LTR MaLR 21 503 -2 2 1849 1080 114 0 0 chr1 165701040 165701207 -31494225 + (TTCC)n Simple_repeat Simple_repeat 3 169 0 2 1849 278 262 88 35 chr1 165701225 165701395 -31494037 - L1M5 LINE L1 -816 5330 5152 2 1849 748 206 144 0 chr1 165701582 165701742 -31493690 - MTD LTR MaLR -16 403 221 2 1849 188 200 40 13 chr1 165701757 165701833 -31493599 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1849 36001 17 0 7 chr1 165701867 165707056 -31488376 + L1Md_T LINE L1 440 5586 -297 2 1849 8237 42 1 0 chr1 165707056 165708051 -31487381 + L1Md_T LINE L1 5587 6582 0 2 1849 347 214 95 0 chr1 165708051 165708135 -31487297 - B1_Mur1 SINE Alu -13 136 45 2 1849 548 29 14 0 chr1 165708237 165708307 -31487125 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1849 442 271 8 25 chr1 165708307 165708424 -31487008 - RSINE1 SINE B4 -22 143 28 2 1849 1305 161 9 13 chr1 165708446 165708672 -31486760 - URR1B DNA MER1_type 0 225 1 2 1849 275 71 24 0 chr1 165709835 165709877 -31485555 + (CCG)n Simple_repeat Simple_repeat 2 44 0 2 1849 204 40 0 0 chr1 165709976 165710001 -31485431 + (CCG)n Simple_repeat Simple_repeat 2 26 0 2 1849 288 130 0 0 chr1 165711628 165711674 -31483758 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1849 702 257 82 55 chr1 165711811 165712284 -31483148 - L1MB5 LINE L1 -346 5828 5343 2 1849 660 87 0 0 chr1 165712294 165712386 -31483046 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1849 635 306 152 9 chr1 165712390 165713046 -31482386 - L1MB5 LINE L1 -897 5243 4495 2 1849 33833 35 0 0 chr1 165713965 165719604 -31475828 + L1Md_T LINE L1 1 5589 -297 2 1849 9006 6 0 0 chr1 165719604 165720600 -31474832 + L1Md_T LINE L1 5590 6585 0 2 1849 219 152 0 0 chr1 165720964 165721010 -31474422 + T-rich Low_complexity Low_complexity 1 46 0 2 1849 913 287 103 8 chr1 165721811 165722286 -31473146 + L1MC2 LINE L1 5425 5944 -400 2 1849 245 170 132 0 chr1 165722446 165722499 -31472933 - L1MC2 LINE L1 -195 6149 6090 2 1849 311 238 90 56 chr1 165722667 165722756 -31472676 - PB1D7 SINE Alu 0 120 29 2 1849 1051 69 7 46 chr1 165723298 165723450 -31471982 - B1_Mm SINE Alu 0 147 2 2 1849 310 211 0 66 chr1 165723686 165723762 -31471670 + ID4 SINE ID 13 83 0 2 1849 369 0 0 0 chr1 165724634 165724675 -31470757 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1849 23 68 0 0 chr1 165725080 165725124 -31470308 + AT_rich Low_complexity Low_complexity 1 44 0 2 1849 23 0 0 0 chr1 165725615 165725638 -31469794 + AT_rich Low_complexity Low_complexity 1 23 0 2 1849 22 0 0 0 chr1 165726346 165726368 -31469064 + AT_rich Low_complexity Low_complexity 1 22 0 2 1849 3442 196 40 11 chr1 165726523 165727242 -31468190 - Lx5 LINE L1 -15 7035 6296 2 1849 271 247 158 40 chr1 165727714 165727891 -31467541 - L1M4 LINE L1 -3823 2821 2624 2 1849 231 348 108 11 chr1 165728366 165728459 -31466973 - B4A SINE B4 -85 207 106 2 1849 2903 151 106 16 chr1 165728466 165729031 -31466401 - RLTR18 LTR ERVK 0 616 1 2 1849 34820 68 12 8 chr1 165729297 165735469 -31459963 - L1Md_F2 LINE L1 -2 6580 387 2 1849 1099 288 138 51 chr1 165735472 165735830 -31459602 - L1M4 LINE L1 -4954 1588 1217 2 1849 326 325 47 64 chr1 165735830 165736126 -31459306 - B4A SINE B4 0 292 2 3 1849 1099 288 138 51 chr1 165736126 165736857 -31458575 - L1M4 LINE L1 -5326 1216 404 2 1849 40763 9 0 6 chr1 165736912 165742888 -31452544 - L1Md_A LINE L1 0 6582 648 3 1849 1220 27 0 0 chr1 165742880 165743029 -31452403 + L1Md_A LINE L1 241 389 -6335 3 1849 897 184 12 30 chr1 165743029 165743269 -31452163 + ORR1A3 LTR MaLR 161 386 -8 3 1849 381 372 71 19 chr1 165743658 165743869 -31451563 + B4A SINE B4 69 290 -2 3 1849 204 216 0 0 chr1 165744753 165744790 -31450642 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1849 448 296 0 36 chr1 165744796 165744936 -31450496 + MIR SINE MIR 7 141 -121 3 1849 1189 257 91 28 chr1 165745001 165745462 -31449970 - L1MA5 LINE L1 -28 6272 5783 3 1849 50 51 0 0 chr1 165745739 165745817 -31449615 + AT_rich Low_complexity Low_complexity 1 78 0 3 1849 193 286 92 37 chr1 165746686 165746795 -31448637 - L3 LINE CR1 -234 4255 4141 3 1849 22 35 0 0 chr1 165747082 165747111 -31448321 + AT_rich Low_complexity Low_complexity 1 29 0 3 1849 693 201 37 7 chr1 165747705 165747840 -31447592 + B1_Mur1 SINE Alu 1 139 -10 3 1849 774 130 98 0 chr1 165749263 165749386 -31446046 + B1_Mus1 SINE Alu 1 135 -13 3 1849 633 61 0 0 chr1 165749389 165749471 -31445961 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 1849 461 339 156 30 chr1 165749588 165750095 -31445337 - L1MEc LINE L1 -750 5569 4999 3 1849 442 91 45 0 chr1 165750902 165750968 -31444464 - L1_Mus3 LINE L1 -654 5984 5916 3 1849 1251 77 0 29 chr1 165750970 165751143 -31444289 + B2_Mm2 SINE B2 3 170 -25 3 1849 381 268 180 61 chr1 165752007 165752285 -31443147 - L1MEc LINE L1 -3034 3285 2975 3 1849 609 291 29 14 chr1 165752549 165752758 -31442674 + B3 SINE B2 4 215 -1 3 1849 1073 269 129 61 chr1 165752785 165753404 -31442028 - L1MEc LINE L1 -5639 761 101 3 1849 327 333 219 21 chr1 165753453 165753742 -31441690 - MLT1C LTR MaLR -67 400 55 3 1849 297 353 36 29 chr1 165753864 165754004 -31441428 + MIRb SINE MIR 9 149 -119 3 1849 22 35 0 0 chr1 165754020 165754049 -31441383 + AT_rich Low_complexity Low_complexity 1 29 0 3 1849 251 289 118 32 chr1 165754154 165754247 -31441185 + PB1D10 SINE Alu 26 126 -1 3 1849 195 339 62 0 chr1 165754363 165754428 -31441004 - L4 LINE RTE -214 1815 1747 3 1849 2915 158 67 0 chr1 165754534 165755053 -31440379 + RMER12 LTR ERVK 1 554 -768 3 1849 448 305 35 79 chr1 165755047 165755250 -31440182 + RMER12 LTR ERVK 1022 1215 -107 3 1849 225 0 0 0 chr1 165755285 165755310 -31440122 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1849 181 304 18 18 chr1 165756422 165756479 -31438953 - MIRm SINE MIR -129 147 91 3 1849 225 211 58 0 chr1 165756786 165756838 -31438594 - ID_B1 SINE B4 -6 218 164 3 1849 218 256 295 0 chr1 165756838 165756864 -31438568 - PB1D7 SINE Alu -6 114 14 3 1849 812 251 50 60 chr1 165756922 165757223 -31438209 - Lx8 LINE L1 -5 7468 7171 3 1849 27 0 0 0 chr1 165757335 165757362 -31438070 + AT_rich Low_complexity Low_complexity 1 27 0 3 1849 272 250 122 46 chr1 165757443 165757650 -31437782 - L1M4 LINE L1 -831 5315 5096 3 1849 664 270 2 60 chr1 165757768 165757959 -31437473 + B3A SINE B2 11 189 -9 3 1849 195 307 92 50 chr1 165758853 165758973 -31436459 + L2c LINE L2 3193 3317 -70 3 1849 723 250 111 0 chr1 165759676 165759884 -31435548 + ORR1E LTR MaLR 4 234 -125 3 1849 344 220 56 0 chr1 165759927 165760037 -31435395 - L1M3e LINE L1 -856 6250 6129 3 1849 1184 258 83 22 chr1 165760046 165760553 -31434879 - L1M3e LINE L1 -1096 6007 5470 3 1849 387 73 0 0 chr1 165760556 165760611 -31434821 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1849 419 290 139 43 chr1 165760626 165760907 -31434525 - L1M3e LINE L1 -1642 5461 5154 3 1849 1701 248 149 28 chr1 165760907 165761899 -31433533 - L1M3e LINE L1 -2077 5026 3915 3 1849 803 256 103 6 chr1 165762233 165762552 -31432880 - L1M3e LINE L1 -3161 3942 3593 3 1849 349 262 66 20 chr1 165762610 165762762 -31432670 - L1M3e LINE L1 -3628 3475 3317 3 1849 497 267 15 37 chr1 165762968 165763104 -31432328 - RSINE1 SINE B4 0 165 33 3 1849 515 174 110 94 chr1 165763167 165763296 -31432136 + B3 SINE B2 67 213 -3 3 1849 396 287 110 0 chr1 165765181 165765345 -31430087 - L1M3e LINE L1 -6761 269 88 3 1849 406 269 18 23 chr1 165765442 165765564 -31429868 - MLT1A0 LTR MaLR -282 126 10 3 1849 290 171 0 14 chr1 165766959 165767030 -31428402 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1849 33 43 0 0 chr1 165767736 165767783 -31427649 + AT_rich Low_complexity Low_complexity 1 47 0 3 1849 204 158 0 0 chr1 165767814 165767852 -31427580 + CT-rich Low_complexity Low_complexity 3 40 0 3 1849 234 0 0 0 chr1 165768100 165768126 -31427306 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1849 225 0 0 0 chr1 165768890 165768915 -31426517 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1849 996 73 7 0 chr1 165768915 165769052 -31426380 - B1_Mus2 SINE Alu 0 147 10 3 1849 236 186 27 67 chr1 165769301 165769376 -31426056 - Charlie1b DNA MER1_type -241 282 211 3 1849 1189 55 0 7 chr1 165769675 165769823 -31425609 - B1_Mus2 SINE Alu 0 147 1 3 1849 400 306 204 32 chr1 165770839 165771183 -31424249 + L2a LINE L2 2447 2849 -570 3 1849 774 280 21 21 chr1 165771187 165771377 -31424055 + B3 SINE B2 2 191 -25 3 1849 208 348 43 0 chr1 165771853 165771945 -31423487 + L2a LINE L2 3309 3404 -22 3 1849 246 340 39 10 chr1 165772308 165772412 -31423020 + MER5C DNA MER1_type 2 108 -205 3 1849 228 323 52 0 chr1 165772483 165772579 -31422853 + MER5C DNA MER1_type 214 312 -1 3 1849 720 217 49 44 chr1 165772638 165772821 -31422611 + B3A SINE B2 15 198 0 3 1849 342 0 0 0 chr1 165773725 165773763 -31421669 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1849 413 238 12 0 chr1 165774972 165775052 -31420380 + ID SINE ID 2 82 -142 3 1849 622 181 24 0 chr1 165776953 165777080 -31418352 + B1_Mur2 SINE Alu 17 146 -3 3 1849 23 33 0 0 chr1 165777136 165777166 -31418266 + AT_rich Low_complexity Low_complexity 1 30 0 3 1849 214 364 26 13 chr1 165777328 165777406 -31418026 - ID SINE ID -144 80 2 3 1849 279 71 0 0 chr1 165777450 165777492 -31417940 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 1849 515 16 0 0 chr1 165777497 165777561 -31417871 - B1_Mus2 SINE Alu -5 142 79 3 1849 394 206 100 27 chr1 165777569 165777679 -31417753 - B1F SINE Alu -15 134 17 3 1849 333 323 148 13 chr1 165777867 165778087 -31417345 + MIRb SINE MIR 22 262 0 3 1849 553 310 59 63 chr1 165778897 165779242 -31416190 + Lx8 LINE L1 6879 7258 -215 3 1849 23 33 0 0 chr1 165779492 165779522 -31415910 + AT_rich Low_complexity Low_complexity 1 30 0 3 1849 769 241 43 0 chr1 165779689 165779896 -31415536 - B3 SINE B2 0 216 1 3 1849 366 80 0 0 chr1 165782622 165782672 -31412760 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1849 292 202 83 30 chr1 165784705 165784838 -31410594 + Lx9 LINE L1 7505 7644 0 3 1849 303 308 82 16 chr1 165785167 165785289 -31410143 + B4 SINE B4 2 131 -161 3 1849 232 359 114 14 chr1 165785292 165785512 -31409920 + L2 LINE L2 2334 2575 -844 3 1849 652 273 25 38 chr1 165786820 165786980 -31408452 + RSINE1 SINE B4 4 161 -4 3 1849 243 0 0 0 chr1 165788337 165788364 -31407068 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1849 195 255 75 0 chr1 165788594 165788672 -31406760 + MIRc SINE MIR 63 153 -115 3 1849 183 42 0 0 chr1 165788948 165788972 -31406460 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1849 217 194 78 31 chr1 165789229 165789293 -31406139 - MER5B DNA MER1_type -111 67 1 3 1849 4113 186 48 24 chr1 165789453 165790743 -31404689 + Lx5 LINE L1 5060 6623 -1073 3 1849 1312 293 50 46 chr1 165790742 165791260 -31404172 + Lx5 LINE L1 6507 7028 -22 3 1849 1832 82 7 29 chr1 165791260 165791536 -31403896 + L1_Mus3 LINE L1 6363 6632 -6 3 1849 1312 293 50 46 chr1 165791536 165791558 -31403874 + Lx5 LINE L1 7029 7049 -1 3 1849 250 335 16 14 chr1 165791711 165791804 -31403628 - MIRc SINE MIR -150 112 19 3 1849 567 0 0 0 chr1 165791883 165791946 -31403486 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 3 1849 204 200 0 0 chr1 165792635 165792690 -31402742 + A-rich Low_complexity Low_complexity 1 55 0 3 1849 332 190 12 37 chr1 165793436 165793518 -31401914 + Charlie5 DNA MER1_type 29 108 -2516 3 1849 312 315 68 5 chr1 165793882 165794167 -31401265 - L1M5 LINE L1 -491 5671 5365 3 1849 261 269 25 13 chr1 165795094 165795173 -31400259 - B4 SINE B4 -199 93 14 3 1849 336 275 38 0 chr1 165795104 165795184 -31400248 - ID4 SINE ID 0 83 1 3 1849 483 18 0 0 chr1 165795280 165795336 -31400096 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 3 1849 1149 57 0 0 chr1 165795348 165795488 -31399944 - B1_Mm SINE Alu -7 140 1 3 1849 466 234 62 34 chr1 165796006 165796152 -31399280 - MTE-int LTR MaLR -512 1068 919 3 1849 410 218 35 0 chr1 165796322 165796409 -31399023 - MTE-int LTR MaLR -1179 401 312 3 1849 1767 256 119 14 chr1 165796584 165797161 -31398271 - Lx8 LINE L1 -609 6864 6227 3 1849 228 35 0 0 chr1 165797194 165797223 -31398209 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1849 495 339 31 58 chr1 165797438 165797588 -31397844 + B4 SINE B4 1 147 -145 3 1849 2480 141 124 13 chr1 165797588 165798063 -31397369 - RLTR12B LTR ERVK 0 528 1 3 1849 495 339 31 58 chr1 165798063 165798103 -31397329 + B4 SINE B4 148 186 -106 3 1849 1333 105 62 0 chr1 165798321 165798530 -31396902 - Lx3_Mus LINE L1 0 7009 6788 3 1849 264 130 0 0 chr1 165798696 165798742 -31396690 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1849 24 53 0 0 chr1 165799209 165799247 -31396185 + AT_rich Low_complexity Low_complexity 1 38 0 3 1849 371 283 108 46 chr1 165801589 165801830 -31393602 - Lx8 LINE L1 0 7473 7218 3 1849 255 278 19 71 chr1 165801874 165802029 -31393403 - Lx7 LINE L1 -574 7122 6976 3 1849 2324 187 52 6 chr1 165802120 165802598 -31392834 - Lx2B LINE L1 -8 6992 6493 3 1849 305 197 13 0 chr1 165803035 165803111 -31392321 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1849 210 384 73 31 chr1 165803112 165803303 -31392129 - B4 SINE B4 0 292 94 3 1849 28 29 0 0 chr1 165803912 165803947 -31391485 + AT_rich Low_complexity Low_complexity 1 35 0 3 1849 32 43 0 0 chr1 165804271 165804317 -31391115 + AT_rich Low_complexity Low_complexity 1 46 0 3 1849 527 247 58 39 chr1 165805371 165805527 -31389905 - RSINE1 SINE B4 -4 161 3 4 1849 993 82 0 7 chr1 165805528 165805679 -31389753 + L1Md_F2 LINE L1 5436 5586 -297 4 231 8152 40 3 3 chr1 165805679 165806670 -31388762 + L1Md_F2 LINE L1 5587 6577 -5 4 1850 393 273 51 60 chr1 165806996 165807113 -31388319 + B4A SINE B4 46 161 -131 4 1850 1098 175 90 49 chr1 165807113 165807401 -31388031 - Lx3C LINE L1 -840 6136 5837 4 1850 8359 145 14 18 chr1 165807408 165808858 -31386574 + Lx3C LINE L1 4353 5797 -80 4 1850 7716 62 2 1 chr1 165809815 165810787 -31384645 + L1_Mus1 LINE L1 5594 6566 -1 4 1850 848 254 54 10 chr1 165811528 165811731 -31383701 + B3 SINE B2 1 212 -4 4 1850 1173 68 7 0 chr1 165812221 165812367 -31383065 + B1_Mus1 SINE Alu 2 148 0 4 1850 196 30 61 0 chr1 165812367 165812400 -31383032 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 4 1850 288 222 44 0 chr1 165812430 165812520 -31382912 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 4 1850 4078 60 6 4 chr1 165815068 165815590 -31379842 - L1_Mus3 LINE L1 -8 6630 6108 4 1850 195 42 0 0 chr1 165815764 165815788 -31379644 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1850 590 273 30 0 chr1 165816778 165816910 -31378522 - RSINE1 SINE B4 -19 146 11 4 1850 1088 57 0 0 chr1 165817253 165817393 -31378039 + B1_Mm SINE Alu 1 140 -7 4 1850 213 39 0 0 chr1 165817892 165817918 -31377514 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1850 27 29 0 0 chr1 165818574 165818608 -31376824 + AT_rich Low_complexity Low_complexity 1 34 0 4 1850 2350 287 95 20 chr1 165819284 165819355 -31376077 - Lx7 LINE L1 -377 7319 7231 4 1850 495 107 0 0 chr1 165819355 165819430 -31376002 + (TATG)n Simple_repeat Simple_repeat 2 76 0 4 1850 2350 287 95 20 chr1 165819430 165820256 -31375176 - Lx7 LINE L1 -466 7230 6355 4 1850 301 138 246 0 chr1 165820266 165820331 -31375101 - BC1_Mm scRNA scRNA -71 81 1 4 1850 261 0 0 0 chr1 165820826 165820855 -31374577 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1850 251 330 80 0 chr1 165821228 165821328 -31374104 + PB1D10 SINE Alu 1 108 -9 4 1850 360 0 0 0 chr1 165821930 165821970 -31373462 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 4 1850 1010 46 77 0 chr1 165821971 165822101 -31373331 - B1_Mus1 SINE Alu -8 140 1 4 1850 271 253 0 25 chr1 165822200 165822281 -31373151 - Lx8 LINE L1 0 7473 7395 4 1850 5381 70 7 8 chr1 165822525 165823235 -31372197 + L1_Mus1 LINE L1 5859 6567 0 4 1850 1056 183 40 15 chr1 165825359 165825559 -31369873 + B3 SINE B2 1 205 -11 4 1850 22 56 0 0 chr1 165825722 165825758 -31369674 + AT_rich Low_complexity Low_complexity 1 36 0 4 1850 288 298 48 9 chr1 165827564 165827669 -31367763 + PB1D10 SINE Alu 1 109 -8 4 1850 26 64 0 0 chr1 165829369 165829416 -31366016 + AT_rich Low_complexity Low_complexity 1 47 0 4 1850 631 244 38 25 chr1 165829761 165829921 -31365511 + RSINE1 SINE B4 4 165 0 4 1850 611 188 78 0 chr1 165830548 165830676 -31364756 + B3 SINE B2 1 138 -78 4 1850 408 20 0 0 chr1 165830701 165830750 -31364682 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1850 26 0 0 0 chr1 165830766 165830792 -31364640 + AT_rich Low_complexity Low_complexity 1 26 0 4 1850 1051 205 78 0 chr1 165832251 165832495 -31362937 + Lx3C LINE L1 6712 6974 -2 4 1850 186 43 0 0 chr1 165832509 165832532 -31362900 + (AAATG)n Simple_repeat Simple_repeat 3 25 0 4 1850 925 135 0 0 chr1 165832532 165832673 -31362759 + L1_Mur1 LINE L1 3665 3805 -2081 4 1850 252 86 0 0 chr1 165832683 165832718 -31362714 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 1850 304 144 9 46 chr1 165832731 165832799 -31362633 - B2_Mm2 SINE B2 -82 116 46 4 1850 1266 124 6 0 chr1 165832830 165833008 -31362424 - B2_Mm1t SINE B2 -14 179 1 4 1850 586 115 12 21 chr1 165833008 165833122 -31362310 + L1_Mur1 LINE L1 3794 3914 -1972 4 1850 24 32 0 0 chr1 165833127 165833158 -31362274 + AT_rich Low_complexity Low_complexity 1 31 0 4 1850 694 187 256 6 chr1 165833401 165833573 -31361859 + ID_B1 SINE B4 1 215 -9 4 1850 1240 252 57 20 chr1 165834231 165834583 -31360849 + Lx6 LINE L1 7069 7433 -27 4 1850 390 115 0 0 chr1 165834819 165834880 -31360552 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 1850 537 16 0 0 chr1 165835160 165835222 -31360210 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1850 784 258 6 6 chr1 165839131 165839314 -31356118 + B3A SINE B2 1 183 -15 4 1850 249 33 0 0 chr1 165839423 165839453 -31355979 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1850 24 77 0 0 chr1 165839545 165839597 -31355835 + AT_rich Low_complexity Low_complexity 1 52 0 4 1850 767 189 0 15 chr1 165839683 165839817 -31355615 + B1_Mur1 SINE Alu 1 132 -17 4 1850 4690 64 0 2 chr1 165840027 165840608 -31354824 - L1_Mus1 LINE L1 0 6567 5988 4 1850 379 271 38 30 chr1 165840942 165841075 -31354357 + RSINE1 SINE B4 4 137 -28 4 1850 234 0 0 0 chr1 165841121 165841147 -31354285 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1850 213 304 188 15 chr1 165841782 165841979 -31353453 + L3 LINE CR1 4176 4406 -83 4 1850 470 342 88 27 chr1 165842911 165843360 -31352072 - LTR86A2 LTR ERVL -28 485 5 4 1850 480 200 0 0 chr1 165843582 165843687 -31351745 + (CA)n Simple_repeat Simple_repeat 2 106 0 4 1850 441 342 13 6 chr1 165847284 165847440 -31347992 + RSINE1 SINE B4 3 159 -6 4 1850 3593 166 61 37 chr1 165848324 165849179 -31346253 - RLTR13D3 LTR ERVK -15 1099 1 4 1850 185 83 0 27 chr1 165849284 165849321 -31346111 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 4 1850 3628 66 43 41 chr1 165849354 165849863 -31345569 - L1_Mus2 LINE L1 0 6566 6057 4 1850 289 207 70 139 chr1 165850810 165850939 -31344493 - PB1D7 SINE Alu 0 120 1 4 1850 495 0 0 0 chr1 165850951 165851006 -31344426 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1850 693 201 42 0 chr1 165852050 165852194 -31343238 - B3A SINE B2 -48 150 1 4 1850 1169 68 0 0 chr1 165852378 165852525 -31342907 + B1_Mm SINE Alu 1 147 0 4 1850 22822 178 80 61 chr1 165852556 165855486 -31339946 - RLTR14-int LTR ERV1 -188 5129 2000 4 1850 207 0 0 0 chr1 165855486 165855509 -31339923 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1850 22822 178 80 61 chr1 165855509 165856937 -31338495 - RLTR14-int LTR ERV1 -3318 1999 567 4 1850 336 48 0 0 chr1 165856937 165856979 -31338453 + (TTAG)n Simple_repeat Simple_repeat 2 43 0 4 1850 22822 178 80 61 chr1 165856979 165857050 -31338382 - RLTR14-int LTR ERV1 -4751 566 566 4 1850 324 0 0 0 chr1 165857050 165857086 -31338346 + (TTAG)n Simple_repeat Simple_repeat 3 38 0 4 1850 22822 178 80 61 chr1 165857086 165857132 -31338300 - RLTR14-int LTR ERV1 -4751 566 551 4 1850 243 88 0 0 chr1 165857132 165857166 -31338266 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 4 1850 22822 178 80 61 chr1 165857166 165857325 -31338107 - RLTR14-int LTR ERV1 -4767 550 394 4 1850 303 49 0 0 chr1 165857325 165857366 -31338066 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 1850 22822 178 80 61 chr1 165857366 165857761 -31337671 - RLTR14-int LTR ERV1 -4924 393 2 4 1850 2060 121 44 78 chr1 165857761 165858146 -31337286 - RLTR14 LTR ERV1 0 382 11 4 1850 305 287 159 44 chr1 165858191 165858417 -31337015 + LTR82B Low_complexity ERVL 74 325 -505 4 1850 394 234 193 6 chr1 165858488 165858664 -31336768 + B4 SINE B4 1 209 -83 4 1850 306 288 36 0 chr1 165859471 165859582 -31335850 + CT-rich Low_complexity Low_complexity 1 115 0 4 1850 567 0 0 0 chr1 165859707 165859770 -31335662 + (CATA)n Simple_repeat Simple_repeat 2 64 0 4 1850 1076 279 107 77 chr1 165862437 165863024 -31332408 - Lx9 LINE L1 -1 7643 7039 4 1850 409 228 0 12 chr1 165867324 165867493 -31327939 + (TG)n Simple_repeat Simple_repeat 1 167 0 4 1850 486 185 75 156 chr1 165867493 165867530 -31327902 - B3A SINE B2 -16 182 156 4 1850 219 36 0 0 chr1 165867530 165867558 -31327874 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1850 216 0 0 0 chr1 165867558 165867581 -31327851 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1850 486 185 75 156 chr1 165867581 165867715 -31327717 - B3A SINE B2 -43 155 25 4 1850 383 248 51 34 chr1 165868437 165868554 -31326878 - PB1 SINE Alu -7 120 2 4 1850 279 266 17 26 chr1 165869561 165869677 -31325755 + (TATATG)n Simple_repeat Simple_repeat 2 116 0 4 1850 201 138 0 0 chr1 165871374 165871403 -31324029 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1850 626 299 172 25 chr1 165872469 165873053 -31322379 + Tigger2b DNA MER2_type 53 722 -4 4 1850 377 241 54 12 chr1 165873172 165873340 -31322092 + (ATAGG)n Simple_repeat Simple_repeat 5 179 0 4 1850 384 22 0 0 chr1 165875297 165875342 -31320090 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1850 704 251 30 15 chr1 165875688 165875890 -31319542 - B3 SINE B2 -9 207 3 4 1850 535 225 119 7 chr1 165878928 165879071 -31316361 - RSINE1 SINE B4 -6 159 1 4 1850 481 218 146 26 chr1 165881201 165881352 -31314080 + B3A SINE B2 12 180 -18 4 1850 236 266 0 15 chr1 165881381 165881446 -31313986 + RSINE1 SINE B4 3 66 -99 4 1850 1618 37 0 16 chr1 165881753 165881947 -31313485 - B2_Mm1a SINE B2 -2 191 1 4 1850 227 274 48 0 chr1 165882942 165883004 -31312428 + RMER30 DNA MER1_type 2 66 -136 4 1850 497 261 65 42 chr1 165883026 165883194 -31312238 + B3 SINE B2 11 182 -34 4 1850 947 134 214 5 chr1 165885770 165885957 -31309475 - URR1A DNA MER1_type 0 226 1 4 1850 233 183 31 62 chr1 165886321 165886385 -31309047 + B1F2 SINE Alu 1 62 -87 4 1850 243 0 0 0 chr1 165886386 165886413 -31309019 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1850 257 284 68 0 chr1 165886821 165886895 -31308537 + ID4_ SINE ID 5 83 0 4 1850 236 238 81 23 chr1 165887796 165887882 -31307550 + L2a LINE L2 2818 2908 -511 4 1850 358 302 125 33 chr1 165887908 165888148 -31307284 + L2a LINE L2 3006 3267 -159 4 1850 253 347 81 0 chr1 165888413 165888491 -31306941 + B1F1 SINE Alu 15 95 -22 4 1850 355 299 52 0 chr1 165889229 165889326 -31306106 + PB1D7 SINE Alu 17 118 -2 4 1850 803 254 68 46 chr1 165889867 165890086 -31305346 + ID_B1 SINE B4 1 224 0 4 1850 947 81 22 33 chr1 165890090 165890270 -31305162 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1850 670 138 35 12 chr1 165890271 165890358 -31305074 + polypurine Low_complexity Low_complexity 4 93 0 4 1850 919 104 24 6 chr1 165890358 165890523 -31304909 + (GAA)n Simple_repeat Simple_repeat 1 168 0 5 1850 670 138 35 12 chr1 165890523 165890604 -31304828 + polypurine Low_complexity Low_complexity 94 175 0 5 1850 1750 208 44 14 chr1 165890859 165891220 -31304212 + MTD LTR MaLR 14 385 -34 5 1850 231 191 221 0 chr1 165891716 165891784 -31303648 + B4A SINE B4 1 83 -209 5 1850 506 168 8 116 chr1 165891820 165891941 -31303491 + B4A SINE B4 185 292 0 5 1850 1466 191 154 28 chr1 165892446 165892802 -31302630 + MTD LTR MaLR 12 412 -7 5 1850 845 72 0 0 chr1 165892982 165893093 -31302339 + B1_Mus1 SINE Alu 38 148 0 5 1850 462 141 40 0 chr1 165893101 165893200 -31302232 + GA-rich Low_complexity Low_complexity 2 104 0 5 1850 32 0 0 0 chr1 165893887 165893919 -31301513 + AT_rich Low_complexity Low_complexity 1 32 0 5 1850 255 320 38 57 chr1 165894213 165894319 -31301113 + PB1D10 SINE Alu 1 104 -13 5 1850 359 275 22 11 chr1 165895280 165895372 -31300060 + PB1D10 SINE Alu 25 117 0 5 1850 369 312 100 22 chr1 165895377 165895557 -31299875 + B3A SINE B2 1 194 -4 5 1850 1037 123 37 46 chr1 165895883 165896092 -31299340 + B2_Mm2 SINE B2 2 193 0 5 1850 463 49 0 0 chr1 165896817 165896878 -31298554 + L1_Mus1 LINE L1 6493 6553 -14 5 1850 230 0 33 0 chr1 165897294 165897324 -31298108 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1850 219 264 38 0 chr1 165897477 165897530 -31297902 - L2a LINE L2 -18 3408 3354 5 1850 890 262 136 53 chr1 165897719 165898057 -31297375 + ORR1D2 LTR MaLR 5 370 0 5 1850 4057 177 50 67 chr1 165898701 165899054 -31296378 + Lx5 LINE L1 4770 5131 -746 5 1850 1205 42 0 0 chr1 165899054 165899197 -31296235 + B1_Mus1 SINE Alu 2 144 -4 5 1850 4057 177 50 67 chr1 165899197 165899883 -31295549 + Lx5 LINE L1 5132 5791 -86 5 1850 1487 105 0 0 chr1 165899961 165900171 -31295261 - Lx2 LINE L1 -13 6984 6775 5 1850 968 87 29 0 chr1 165900171 165900309 -31295123 - Lx2 LINE L1 -354 6643 6502 5 1850 229 83 0 0 chr1 165901056 165901092 -31294340 + Lx5 LINE L1 5785 5820 -1230 5 1850 240 35 0 0 chr1 165901210 165901239 -31294193 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 5 1850 777 251 113 11 chr1 165901290 165901572 -31293860 + Lx8 LINE L1 7163 7473 0 5 1850 23 0 0 0 chr1 165901576 165901599 -31293833 + AT_rich Low_complexity Low_complexity 1 23 0 5 1850 238 322 17 0 chr1 165902842 165902901 -31292531 + B4 SINE B4 95 154 -138 5 1850 208 184 0 20 chr1 165902925 165902975 -31292457 + A-rich Low_complexity Low_complexity 3 51 0 5 1850 222 285 107 71 chr1 165903512 165903652 -31291780 - L2a LINE L2 -8 3418 3274 5 1850 858 264 237 20 chr1 165903677 165904086 -31291346 + MER44D DNA MER2_type 37 534 -171 5 1850 1947 167 159 93 chr1 165904270 165904569 -31290863 - RMER6C LTR ERVK 0 690 399 5 1850 279 0 0 0 chr1 165904569 165904600 -31290832 + (CACTG)n Simple_repeat Simple_repeat 1 31 0 5 1850 1947 167 159 93 chr1 165904600 165904947 -31290485 - RMER6C LTR ERVK -292 398 1 5 1850 468 51 0 0 chr1 165905078 165905137 -31290295 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1850 1317 51 0 0 chr1 165905137 165905315 -31290117 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1850 212 318 63 9 chr1 165905471 165905582 -31289850 - MIR SINE MIR -40 222 106 5 1850 487 275 50 21 chr1 165905643 165905784 -31289648 + RSINE1 SINE B4 4 148 -17 5 1850 1243 87 55 0 chr1 165906056 165906239 -31289193 + B2_Mm2 SINE B2 3 195 0 5 1850 25 0 0 0 chr1 165907472 165907497 -31287935 + AT_rich Low_complexity Low_complexity 1 25 0 5 1850 586 272 89 0 chr1 165907950 165908130 -31287302 + B4A SINE B4 89 284 -8 5 1850 216 357 29 0 chr1 165908644 165908714 -31286718 + RSINE1 SINE B4 78 149 -16 5 1850 2090 200 21 85 chr1 165908886 165909368 -31286064 - RLTR18B LTR ERVK -44 468 18 5 1850 809 226 112 33 chr1 165910119 165910361 -31285071 + MLT1C LTR MaLR 200 460 -7 5 1850 239 0 0 31 chr1 165910536 165910568 -31284864 + (CACCC)n Simple_repeat Simple_repeat 1 31 0 5 1850 244 304 118 26 chr1 165910583 165910735 -31284697 + RMER13B LTR ERVK 606 771 -137 5 1850 683 317 40 18 chr1 165910896 165911121 -31284311 + MLT1A LTR MaLR 130 359 -15 5 1850 324 0 0 0 chr1 165911254 165911290 -31284142 + (TATG)n Simple_repeat Simple_repeat 2 37 0 5 1850 927 166 32 16 chr1 165911492 165911682 -31283750 - URR1B DNA MER1_type 0 225 33 5 1850 189 214 0 0 chr1 165912392 165912434 -31282998 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1850 23 54 0 0 chr1 165912672 165912709 -31282723 + AT_rich Low_complexity Low_complexity 1 37 0 5 1850 222 371 28 37 chr1 165913087 165913196 -31282236 - L2a LINE L2 -15 3411 3304 5 1850 256 365 84 0 chr1 165913589 165913792 -31281640 - MIR SINE MIR -13 249 30 5 1850 278 356 21 92 chr1 165913987 165914225 -31281207 - Charlie13b DNA Charlie -204 308 88 5 1850 274 294 45 18 chr1 165915504 165915615 -31279817 - PB1D10 SINE Alu -3 114 1 5 1850 450 0 0 0 chr1 165916924 165916974 -31278458 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 1850 316 305 32 0 chr1 165917475 165917570 -31277862 - B1F SINE Alu -48 101 4 5 1850 236 246 29 0 chr1 165917619 165917688 -31277744 - PB1D10 SINE Alu 0 117 47 5 1850 3000 121 12 2 chr1 165917938 165918443 -31276989 - L1_Mur2 LINE L1 -486 5391 4882 5 1850 1934 201 184 4 chr1 165918434 165918851 -31276581 + Lx2B LINE L1 6346 6844 -156 5 1850 306 0 0 0 chr1 165918851 165918885 -31276547 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1850 1934 201 184 4 chr1 165918885 165919005 -31276427 + Lx2B LINE L1 6845 6979 -21 5 1850 23 0 0 0 chr1 165919156 165919179 -31276253 + AT_rich Low_complexity Low_complexity 1 23 0 5 1850 800 188 28 0 chr1 165919319 165919463 -31275969 - B1_Mur2 SINE Alu 0 149 2 5 1850 503 180 101 67 chr1 165921741 165921860 -31273572 - RSINE1 SINE B4 -33 132 10 5 1850 502 228 48 16 chr1 165922048 165922173 -31273259 + MTD LTR MaLR 1 129 -292 5 1850 1509 220 68 5 chr1 165922173 165922557 -31272875 - Lx6 LINE L1 -20 7440 7033 5 1850 521 188 171 8 chr1 165922561 165922690 -31272742 + MTD LTR MaLR 106 255 -164 5 1850 775 239 0 62 chr1 165922760 165922952 -31272480 + MTD LTR MaLR 232 411 -8 5 1850 1246 41 0 0 chr1 165923005 165923152 -31272280 + B1_Mus2 SINE Alu 1 147 0 5 1850 213 39 0 0 chr1 165923418 165923444 -31271988 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1850 325 276 109 0 chr1 165923853 165923948 -31271484 + B1_Mur1 SINE Alu 13 119 -30 5 1850 1203 41 14 0 chr1 165925662 165925807 -31269625 + B1_Mm SINE Alu 1 147 0 5 1850 299 203 16 0 chr1 165927885 165927949 -31267483 + ID4 SINE ID 3 67 -16 5 1850 491 290 83 68 chr1 165928167 165928526 -31266906 + RLTR15 LTR ERVK 1 329 -30 5 1850 389 290 37 30 chr1 165928894 165929029 -31266403 - B1F SINE Alu -1 148 13 5 1850 1146 75 0 0 chr1 165929674 165929821 -31265611 - B1_Mus2 SINE Alu 0 147 1 5 1850 582 157 0 0 chr1 165930640 165930761 -31264671 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1850 190 231 0 0 chr1 165931352 165931391 -31264041 + MIR SINE MIR 122 160 -102 5 1850 694 249 5 62 chr1 165931475 165931497 -31263935 - B3A SINE B2 0 198 182 5 1850 189 0 0 0 chr1 165931497 165931518 -31263914 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1850 694 249 5 62 chr1 165931518 165931705 -31263727 - B3A SINE B2 -17 181 1 5 1850 985 265 84 76 chr1 165932183 165932551 -31262881 + MTEa LTR MaLR 7 377 -2 5 1850 351 232 11 44 chr1 165934269 165934359 -31261073 + B1_Mur1 SINE Alu 43 129 -20 5 1850 302 291 0 12 chr1 165934789 165934869 -31260563 + ID2 SINE ID 1 79 -4 5 1850 463 281 108 92 chr1 165935131 165935500 -31259932 + MTEb LTR MaLR 1 375 -4 5 1850 220 270 32 43 chr1 165936193 165936286 -31259146 - MER5A DNA MER1_type -94 95 4 5 1850 296 311 0 13 chr1 165936361 165936436 -31258996 + ID_B1 SINE B4 99 172 -52 5 1850 959 168 0 0 chr1 165936572 165936721 -31258711 + B1_Mur2 SINE Alu 1 149 0 5 1850 198 0 0 0 chr1 165936789 165936811 -31258621 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 231 2740 278 63 15 chr1 165936811 165937688 -31257744 - Lx8 LINE L1 -225 7248 6330 5 1851 1763 205 146 37 chr1 165937714 165937836 -31257596 + RMER16 LTR ERVK 1 123 -410 5 1851 1040 42 40 47 chr1 165937836 165937984 -31257448 - B1_Mm SINE Alu 0 147 1 5 1851 1763 205 146 37 chr1 165937984 165938342 -31257090 + RMER16 LTR ERVK 124 532 -1 5 1851 250 303 90 14 chr1 165938351 165938495 -31256937 - Lx7 LINE L1 -1493 6203 6049 5 1851 2636 269 136 26 chr1 165938582 165939100 -31256332 - Lx7 LINE L1 -20 5860 5321 5 1851 186 43 0 0 chr1 165939100 165939123 -31256309 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1851 2636 269 136 26 chr1 165939123 165939482 -31255950 - Lx7 LINE L1 -560 5320 4919 5 1851 954 153 26 21 chr1 165939482 165939675 -31255757 - B2_Mm2 SINE B2 0 195 2 5 1851 2636 269 136 26 chr1 165939675 165940137 -31255295 - Lx7 LINE L1 -962 4918 4374 5 1851 305 271 14 0 chr1 165940962 165941032 -31254400 - RSINE1 SINE B4 -21 144 74 5 1851 474 18 0 0 chr1 165941804 165941859 -31253573 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 5 1851 933 67 0 0 chr1 165941859 165941978 -31253454 - B1_Mus2 SINE Alu -27 120 2 5 1851 227 258 45 0 chr1 165941978 165942015 -31253417 - MT2C_Mm LTR ERVL -269 206 167 5 1851 599 40 0 13 chr1 165942906 165942983 -31252449 - RLTRETN_Mm LTR ERVK 0 322 247 5 1851 633 190 118 98 chr1 165942979 165943248 -31252184 - RLTR9C LTR ERVK -105 304 1 5 1851 235 360 52 0 chr1 165943992 165944128 -31251304 - L2 LINE L2 -1647 1772 1630 5 1851 372 352 8 0 chr1 165944518 165944646 -31250786 - L2 LINE L2 -1889 1530 1402 5 1851 258 32 0 0 chr1 165944696 165944727 -31250705 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1851 2271 154 78 14 chr1 165944730 165945151 -31250281 - RMER6B LTR ERVK -13 448 1 5 1851 180 176 0 0 chr1 165945210 165945244 -31250188 + T-rich Low_complexity Low_complexity 1 34 0 5 1851 351 0 0 0 chr1 165948350 165948389 -31247043 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1851 191 199 0 0 chr1 165948862 165948904 -31246528 + MIRc SINE MIR 157 204 -64 5 1851 1689 37 5 0 chr1 165949409 165949598 -31245834 + B2_Mm1t SINE B2 2 191 -2 5 1851 681 95 0 0 chr1 165950698 165950814 -31244618 + (TC)n Simple_repeat Simple_repeat 1 116 0 5 1851 279 0 0 0 chr1 165950814 165950844 -31244588 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1851 2438 148 7 56 chr1 165951106 165951536 -31243896 + RLTR9E LTR ERVK 1 409 0 6 1851 195 220 0 57 chr1 165951858 165951911 -31243521 + L2 LINE L2 2402 2451 -968 6 1851 1189 75 7 20 chr1 165951942 165952091 -31243341 - B1_Mus1 SINE Alu -1 147 1 6 1851 362 97 302 50 chr1 165952217 165952336 -31243096 - B2_Mm2 SINE B2 0 195 47 6 1851 1303 76 46 17 chr1 165952367 165952542 -31242890 - B2_Mm1t SINE B2 -13 180 1 6 1851 404 254 82 67 chr1 165952758 165952893 -31242539 - B1F1 SINE Alu -11 138 2 6 1851 712 289 55 6 chr1 165952922 165953103 -31242329 + B3 SINE B2 2 191 -25 6 1851 284 380 55 10 chr1 165953149 165953351 -31242081 + L2 LINE L2 2872 3082 -337 6 1851 1147 117 0 0 chr1 165954266 165954411 -31241021 + B1_Mur2 SINE Alu 5 149 0 6 1851 1243 54 0 26 chr1 165954672 165954684 -31240748 - B1_Mus2 SINE Alu 0 147 139 6 1851 279 0 0 0 chr1 165954684 165954715 -31240717 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1851 1243 54 0 26 chr1 165954715 165954853 -31240579 - B1_Mus2 SINE Alu -9 138 1 6 1851 21 0 0 0 chr1 165954858 165954879 -31240553 + AT_rich Low_complexity Low_complexity 1 21 0 6 1851 271 229 25 198 chr1 165954927 165955021 -31240411 - L1ME1 LINE L1 -78 6101 6019 6 1851 1737 31 11 0 chr1 165955021 165955212 -31240220 - B2_Mm1a SINE B2 0 193 1 6 1851 271 229 25 198 chr1 165955212 165955347 -31240085 - L1ME1 LINE L1 -161 6018 5918 6 1851 4803 135 20 15 chr1 165955347 165956099 -31239333 + RMER6A LTR ERVK 1 756 0 6 1851 271 229 25 198 chr1 165956099 165956146 -31239286 - L1ME1 LINE L1 -262 5917 5872 6 1851 297 319 0 0 chr1 165956995 165957064 -31238368 - MTE-int LTR MaLR -1130 450 382 6 1851 1544 201 203 24 chr1 165957064 165957985 -31237447 + RLTR18-int LTR ERVK 3097 4182 -1179 6 1851 287 320 57 64 chr1 165957985 165958262 -31237170 - ORR1E LTR MaLR -31 348 56 6 1851 1174 323 137 13 chr1 165960195 165960743 -31234689 - MLT1E2 LTR MaLR -1 626 11 6 1851 203 0 37 0 chr1 165960800 165960827 -31234605 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1851 998 276 39 30 chr1 165961566 165961899 -31233533 + L1MC LINE L1 5489 5824 -509 6 1851 381 233 11 0 chr1 165962009 165962099 -31233333 + RMER1B Other Other 61 151 -915 6 1851 340 194 0 0 chr1 165962510 165962572 -31232860 + RMER1B Other Other 53 114 -952 6 1851 1822 163 72 93 chr1 165962572 165963003 -31232429 + MT2B LTR ERVL 1 555 -46 6 1851 351 0 0 0 chr1 165963003 165963042 -31232390 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1851 1822 150 38 91 chr1 165963042 165963093 -31232339 + MT2B LTR ERVL 556 601 0 6 1851 2125 112 14 96 chr1 165963096 165963450 -31231982 + ORR1A3 LTR MaLR 1 325 -1 6 1851 2562 196 106 26 chr1 165963453 165964207 -31231225 + RMER1B Other Other 110 1066 0 6 1851 229 152 20 61 chr1 165964207 165964256 -31231176 - MTC LTR MaLR -301 120 74 6 1851 1951 164 3 48 chr1 165964776 165965147 -31230285 + ORR1B1 LTR MaLR 41 394 0 6 1851 242 205 56 78 chr1 165966130 165966220 -31229212 + B3A SINE B2 2 89 -109 6 1851 331 295 116 0 chr1 165966197 165966309 -31229123 + B4A SINE B4 162 286 -6 6 1851 269 272 165 60 chr1 165966526 165966588 -31228844 - B1F1 SINE Alu -2 147 73 6 1851 1151 130 149 5 chr1 165966588 165966782 -31228650 + URR1A DNA MER1_type 1 222 -4 6 1851 269 272 165 60 chr1 165966782 165966852 -31228580 - B1F1 SINE Alu -77 72 1 6 1851 228 308 0 25 chr1 165967304 165967384 -31228048 - L1M5 LINE L1 -459 5665 5588 6 1851 228 184 0 0 chr1 165967479 165967528 -31227904 + CT-rich Low_complexity Low_complexity 1 49 0 6 1851 450 334 199 29 chr1 165968049 165968767 -31226665 - L1MC4 LINE L1 -1016 7026 6164 6 1851 180 0 0 0 chr1 165968785 165968805 -31226627 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1851 276 200 0 0 chr1 165968836 165968896 -31226536 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1851 366 294 113 25 chr1 165968916 165969165 -31226267 - L1MC4 LINE L1 -316 5808 5538 6 1851 681 313 185 27 chr1 165969179 165969514 -31225918 + MTD LTR MaLR 18 405 -14 6 1851 237 65 0 0 chr1 165970234 165970265 -31225167 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 6 1851 279 353 63 92 chr1 165970418 165970721 -31224711 - MLT2B1 LTR ERVL 0 520 227 6 1851 1105 275 41 51 chr1 165971704 165972105 -31223327 + MTE2a LTR MaLR 10 419 0 6 1851 516 323 129 25 chr1 165972105 165972397 -31223035 + MLT1E2 LTR MaLR 280 616 -8 6 1851 537 226 42 76 chr1 165972425 165972569 -31222863 + RSINE1 SINE B4 21 159 -6 6 1851 452 361 59 14 chr1 165972773 165972992 -31222440 + LTR16C LTR ERVL 259 487 -2 6 1851 410 330 56 17 chr1 165973099 165973278 -31222154 + MIRb SINE MIR 25 210 -58 6 1851 474 143 0 0 chr1 165974062 165974153 -31221279 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 1851 315 150 0 48 chr1 165974192 165974255 -31221177 + HAL1-3A_ME LINE L1 1968 2027 -831 6 1851 270 182 0 0 chr1 165974255 165974321 -31221111 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1851 638 168 0 6 chr1 165974347 165974509 -31220923 + (CA)n Simple_repeat Simple_repeat 2 162 0 6 1851 709 142 0 9 chr1 165974536 165974762 -31220670 + (CA)n Simple_repeat Simple_repeat 1 223 0 6 1851 222 37 0 0 chr1 165974922 165974949 -31220483 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1851 489 303 56 14 chr1 165974988 165975132 -31220300 - ID_B1 SINE B4 -4 220 71 6 1851 294 98 0 0 chr1 165975195 165975246 -31220186 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 6 1851 469 280 45 8 chr1 165975246 165975374 -31220058 - B1F1 SINE Alu -11 138 5 6 1851 1079 61 25 28 chr1 165977335 165977621 -31217811 + (TAGA)n Simple_repeat Simple_repeat 1 284 0 6 1851 307 242 59 20 chr1 165978896 165978997 -31216435 - MER20 DNA MER1_type 0 219 115 6 1851 195 235 0 0 chr1 165979896 165979947 -31215485 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1851 180 0 0 0 chr1 165981394 165981414 -31214018 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1851 552 73 0 0 chr1 165983307 165983389 -31212043 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1851 643 276 39 26 chr1 165983389 165983545 -31211887 - RSINE1 SINE B4 -6 159 2 6 1851 315 0 0 0 chr1 165984897 165984932 -31210500 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1851 243 0 0 0 chr1 165985304 165985331 -31210101 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1851 264 322 45 45 chr1 165985365 165985521 -31209911 + MER102b DNA MER1_type 56 211 -130 6 1851 806 179 6 0 chr1 165986014 165986182 -31209250 + CT-rich Low_complexity Low_complexity 2 170 0 6 1851 198 0 0 0 chr1 165986232 165986254 -31209178 + (TGG)n Simple_repeat Simple_repeat 1 22 0 6 1851 180 222 55 18 chr1 165986342 165986397 -31209035 - MIR SINE MIR -128 134 78 6 1851 434 235 59 29 chr1 165986622 165986758 -31208674 - L1MC2 LINE L1 -160 6184 6045 6 1851 407 35 18 0 chr1 165988347 165988404 -31207028 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1851 23 33 0 0 chr1 165988499 165988529 -31206903 + AT_rich Low_complexity Low_complexity 1 30 0 6 1851 948 299 101 20 chr1 165988858 165989452 -31205980 - L1MB7 LINE L1 -101 6083 5442 6 1851 1874 140 23 111 chr1 165989623 165989696 -31205736 - ORR1B1 LTR MaLR -2 392 338 6 1851 1267 48 7 0 chr1 165989696 165989841 -31205591 - B1_Mus2 SINE Alu 0 147 2 6 1851 1874 140 23 111 chr1 165989841 165990153 -31205279 - ORR1B1 LTR MaLR -57 337 41 6 1851 233 333 14 0 chr1 165990324 165990393 -31205039 + MLT2B2 LTR ERVL 371 440 -122 6 1851 405 0 0 0 chr1 165990503 165990548 -31204884 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1851 256 176 0 56 chr1 165990889 165990929 -31204503 + T-rich Low_complexity Low_complexity 32 68 0 6 1851 1027 67 86 36 chr1 165990929 165991068 -31204364 - B1_Mus1 SINE Alu -2 146 1 6 1851 256 176 0 56 chr1 165991068 165991099 -31204333 + T-rich Low_complexity Low_complexity 1 31 0 6 1851 1232 35 21 0 chr1 165991101 165991242 -31204190 - B1_Mus1 SINE Alu 0 148 5 6 1851 468 175 0 0 chr1 165991768 165991865 -31203567 + GA-rich Low_complexity Low_complexity 1 97 0 6 1851 366 156 0 0 chr1 165991948 165992012 -31203420 - Lx9 LINE L1 0 7644 7581 6 1851 269 89 22 0 chr1 165992101 165992146 -31203286 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1851 195 69 0 0 chr1 165992443 165992472 -31202960 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1851 234 167 0 0 chr1 165993372 165993432 -31202000 + T-rich Low_complexity Low_complexity 1 60 0 6 1851 2182 240 96 30 chr1 165993892 165994559 -31200873 - Lx8 LINE L1 0 7473 6763 6 1851 548 167 22 0 chr1 165998108 165998198 -31197234 - B1_Mus2 SINE Alu 0 147 56 6 1851 947 236 20 0 chr1 165998661 165998864 -31196568 + B3 SINE B2 1 207 -9 6 1851 30 0 0 0 chr1 165998866 165998896 -31196536 + AT_rich Low_complexity Low_complexity 1 30 0 6 1851 348 24 0 0 chr1 165999331 165999372 -31196060 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1851 195 146 0 0 chr1 165999396 165999437 -31195995 + (CAAAC)n Simple_repeat Simple_repeat 4 44 0 6 1851 329 254 100 0 chr1 166000315 166000425 -31195007 + B3 SINE B2 1 121 -95 1 1851 387 0 0 0 chr1 166002417 166002460 -31192972 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1851 212 269 0 11 chr1 166002898 166002992 -31192440 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1851 198 252 26 55 chr1 166005328 166005399 -31190033 - MIR SINE MIR -19 249 176 4 1851 194 386 28 7 chr1 166008124 166008265 -31187167 - MIR SINE MIR -1 261 118 5 1851 747 239 4 136 chr1 166009287 166009515 -31185917 + B3A SINE B2 1 198 0 6 1851 187 314 0 0 chr1 166010862 166010913 -31184519 + L2c LINE L2 3266 3316 -71 7 1851 231 178 23 161 chr1 166011315 166011402 -31184030 + RLTR25A LTR ERVK 508 582 -521 8 1851 615 103 72 0 chr1 166011332 166011429 -31184003 + B1_Mur1 SINE Alu 45 148 -1 9 1851 201 178 0 0 chr1 166011451 166011496 -31183936 + GA-rich Low_complexity Low_complexity 2 46 0 1 1851 255 31 0 0 chr1 166011580 166011612 -31183820 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1851 360 94 0 0 chr1 166012833 166012886 -31182546 + (TCC)n Simple_repeat Simple_repeat 3 55 0 1 1851 249 349 0 0 chr1 166013295 166013361 -31182071 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 1 1851 363 296 49 12 chr1 166013460 166013624 -31181808 + MIR SINE MIR 80 249 -13 1 1851 196 200 25 0 chr1 166014188 166014228 -31181204 + MIR SINE MIR 115 155 -107 1 1851 444 202 61 0 chr1 166014231 166014330 -31181102 + Lx8 LINE L1 6852 6956 -517 1 1851 338 288 6 0 chr1 166014330 166014507 -31180925 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1851 1454 249 65 19 chr1 166014509 166014878 -31180554 + Lx8 LINE L1 6966 7351 -122 1 1851 319 272 59 81 chr1 166014892 166015028 -31180404 + B4 SINE B4 4 136 -156 1 1851 216 0 0 0 chr1 166015227 166015251 -31180181 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1851 273 219 0 0 chr1 166015573 166015646 -31179786 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1851 654 204 12 14 chr1 166015758 166015914 -31179518 + B1_Mus1 SINE Alu 4 131 -18 2 1851 380 304 61 48 chr1 166016261 166016572 -31178860 + L1_Mur3 LINE L1 3545 3859 -2021 2 1851 226 229 51 20 chr1 166016607 166016705 -31178727 + LTR16B1 LTR ERVL 287 387 -93 2 1851 368 89 51 0 chr1 166017222 166017301 -31178131 + (CAA)n Simple_repeat Simple_repeat 2 84 0 2 1851 204 176 170 0 chr1 166019529 166019682 -31175750 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 2 1851 1543 256 116 14 chr1 166019820 166020540 -31174892 + L1M2 LINE L1 1688 2886 -3963 2 1851 4065 2 0 0 chr1 166020567 166020990 -31174442 - L1Md_T LINE L1 0 6582 6160 2 1851 638 297 128 18 chr1 166020992 166021431 -31174001 + L1M2 LINE L1 3052 3538 -3307 2 1851 8077 138 19 9 chr1 166021451 166023199 -31172233 - Lx3C LINE L1 -2 6974 5207 2 1851 574 116 0 10 chr1 166023203 166023299 -31172133 + B2_Mm2 SINE B2 100 194 -1 2 1851 443 286 20 45 chr1 166023302 166023500 -31171932 + L1M2 LINE L1 3552 3744 -3101 2 1851 253 196 0 0 chr1 166023500 166023542 -31171890 + B2_Mm2 SINE B2 1 42 -153 3 1851 1013 213 36 18 chr1 166023542 166023762 -31171670 - MTD LTR MaLR 0 419 196 3 1851 245 111 143 0 chr1 166023783 166023846 -31171586 - Lx5 LINE L1 0 7050 6979 3 1851 269 319 124 16 chr1 166023849 166023970 -31171462 + B3 SINE B2 36 169 -47 3 1851 423 0 0 0 chr1 166023985 166024032 -31171400 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1851 746 276 105 61 chr1 166024130 166024739 -31170693 + L1M2 LINE L1 3926 4561 -2284 2 1851 1090 222 188 26 chr1 166024746 166025097 -31170335 + MTD LTR MaLR 10 417 -2 3 1851 289 311 0 11 chr1 166025269 166025360 -31170072 - 5S rRNA rRNA -31 90 1 3 1851 1691 32 5 0 chr1 166025397 166025585 -31169847 - B2_Mm1t SINE B2 -4 189 1 3 1851 261 277 125 49 chr1 166025725 166025869 -31169563 + MIR SINE MIR 107 261 -1 3 1851 367 293 30 88 chr1 166026482 166026744 -31168688 - L1ME3A LINE L1 -5 6168 5922 3 1851 1784 250 30 0 chr1 166028784 166029152 -31166280 + MTE2b LTR MaLR 1 379 0 4 1851 2471 153 46 8 chr1 166029666 166030061 -31165371 - Lx5 LINE L1 -3 7047 6638 4 1851 380 238 78 23 chr1 166030289 166030418 -31165014 - L1MCa LINE L1 -743 5794 5659 4 1851 3714 20 2 0 chr1 166030604 166030999 -31164433 - MTA_Mm LTR MaLR 0 396 1 4 1851 567 112 0 0 chr1 166031063 166031152 -31164280 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1851 276 224 0 0 chr1 166031244 166031302 -31164130 + RLTR11B LTR ERVK 1 58 -395 4 1851 423 266 89 34 chr1 166031335 166031514 -31163918 - RLTR11A2 LTR ERVK -320 207 19 4 1851 1003 302 27 0 chr1 166031510 166031808 -31163624 - MLT1A0 LTR MaLR -55 310 5 4 1851 587 243 31 52 chr1 166031809 166032028 -31163404 - L1MCa LINE L1 -1487 5050 4846 4 1851 2005 249 147 10 chr1 166031998 166032775 -31162657 - L1MCa LINE L1 -4569 2064 1114 4 1851 586 214 39 23 chr1 166032807 166032936 -31162496 + Lx8 LINE L1 6375 6505 -968 4 1851 1521 247 60 34 chr1 166032937 166033502 -31161930 + L1_Mur3 LINE L1 2323 2902 -2978 4 1851 1577 67 0 30 chr1 166034105 166034306 -31161126 + B2_Mm2 SINE B2 1 195 0 5 1851 488 295 112 56 chr1 166035158 166035212 -31160220 - L1M3 LINE L1 -810 5330 5277 5 1851 3469 55 2 0 chr1 166035212 166035611 -31159821 - MTB LTR MaLR 0 400 1 5 1851 7493 101 9 70 chr1 166035611 166036778 -31158654 - MTB-int LTR MaLR 0 1098 3 5 1851 3622 83 17 6 chr1 166036782 166037252 -31158180 - MT2C_Mm LTR ERVL 0 475 1 5 1851 488 295 112 56 chr1 166037252 166037529 -31157903 - L1M3 LINE L1 -864 5276 4975 5 1851 478 304 35 21 chr1 166037726 166037867 -31157565 + B1_Mur1 SINE Alu 1 143 -6 5 1851 890 263 14 19 chr1 166037896 166038105 -31157327 - B3 SINE B2 -8 208 1 5 1851 297 0 0 0 chr1 166038106 166038139 -31157293 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 5 1851 1122 117 0 0 chr1 166038139 166038317 -31157115 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1851 591 92 0 0 chr1 166038317 166038404 -31157028 + (GAAA)n Simple_repeat Simple_repeat 3 89 0 5 1851 209 333 68 11 chr1 166039214 166039302 -31156130 + MIRb SINE MIR 158 250 -18 5 1851 516 16 0 0 chr1 166039842 166039903 -31155529 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1851 357 125 0 0 chr1 166040681 166040737 -31154695 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1851 768 199 67 11 chr1 166040738 166040916 -31154516 + Lx7 LINE L1 7462 7649 -47 6 1851 229 226 35 62 chr1 166040900 166041013 -31154419 + Lx7 LINE L1 7580 7689 -7 6 1851 338 239 34 0 chr1 166041151 166041239 -31154193 + MTD LTR MaLR 196 286 -133 6 1851 385 236 64 0 chr1 166041270 166041380 -31154052 - L1MA8 LINE L1 -175 6116 6000 6 1851 248 350 8 39 chr1 166041394 166041522 -31153910 - ID4 SINE ID -14 138 15 6 1851 328 281 47 47 chr1 166041619 166041746 -31153686 + RLTR42-int LTR ERVK 1245 1371 -4151 6 1851 273 116 0 0 chr1 166042364 166042407 -31153025 - RLTR12A LTR ERVK -525 43 1 6 1851 374 319 31 18 chr1 166044214 166044377 -31151055 - MIR SINE MIR -1 261 97 6 1851 214 337 10 30 chr1 166044769 166044870 -31150562 - PB1D10 SINE Alu -13 104 6 6 1851 309 304 67 29 chr1 166045676 166045781 -31149651 - PB1D10 SINE Alu -8 109 1 7 1851 191 333 75 53 chr1 166046204 166046337 -31149095 + MIRb SINE MIR 126 261 -7 7 1851 474 18 0 0 chr1 166046665 166046720 -31148712 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1851 555 92 0 0 chr1 166047591 166047678 -31147754 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1851 248 333 33 8 chr1 166048821 166048942 -31146490 - L2 LINE L2 -492 2927 2804 7 1851 235 276 121 0 chr1 166048952 166049010 -31146422 + ID4 SINE ID 3 67 -16 7 1851 757 142 13 13 chr1 166049017 166049167 -31146265 + GA-rich Low_complexity Low_complexity 2 151 0 7 1851 780 42 0 0 chr1 166049915 166050011 -31145421 + (GGAGA)n Simple_repeat Simple_repeat 1 96 0 7 1851 358 190 10 20 chr1 166050055 166050157 -31145275 + GA-rich Low_complexity Low_complexity 2 102 0 7 1851 560 40 0 13 chr1 166050872 166050948 -31144484 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1851 342 252 212 0 chr1 166051431 166051530 -31143902 + ID_B1 SINE B4 84 203 -21 8 1851 255 233 94 120 chr1 166051530 166051548 -31143884 + B1_Mur1 SINE Alu 3 116 -33 8 1851 233 296 137 7 chr1 166052347 166052500 -31142932 - Charlie2b DNA MER1_type -18 2764 2592 8 1851 254 217 0 14 chr1 166052641 166052711 -31142721 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1851 726 203 102 0 chr1 166052712 166052840 -31142592 - B1_Mur4 SINE Alu -6 144 4 8 1851 36 40 0 0 chr1 166052875 166052925 -31142507 + AT_rich Low_complexity Low_complexity 1 50 0 8 1851 405 353 21 35 chr1 166054269 166054410 -31141022 + B3A SINE B2 42 180 -18 8 1851 234 0 0 0 chr1 166054414 166054440 -31140992 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1851 276 211 0 0 chr1 166054613 166054684 -31140748 + CT-rich Low_complexity Low_complexity 1 71 0 8 1851 501 17 0 0 chr1 166054692 166054750 -31140682 + (TTTC)n Simple_repeat Simple_repeat 4 61 0 8 1851 381 292 11 0 chr1 166054750 166054839 -31140593 - PB1D10 SINE Alu -13 104 15 9 1851 409 204 141 10 chr1 166055511 166055610 -31139822 + PB1D10 SINE Alu 3 114 -3 9 1851 210 71 0 0 chr1 166055757 166055785 -31139647 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1851 243 0 0 0 chr1 166055799 166055826 -31139606 + (TGG)n Simple_repeat Simple_repeat 1 27 0 9 1851 243 0 0 0 chr1 166055829 166055856 -31139576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1851 1230 90 45 0 chr1 166055937 166056114 -31139318 - B2_Mm2 SINE B2 -5 190 6 9 1851 808 211 194 0 chr1 166057677 166057857 -31137575 + B3 SINE B2 2 216 0 9 1851 1660 47 0 0 chr1 166057875 166058068 -31137364 + B2_Mm1t SINE B2 1 193 0 9 1851 210 71 0 0 chr1 166058140 166058168 -31137264 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1851 1142 209 0 0 chr1 166058576 166058782 -31136650 + B3 SINE B2 1 206 -10 9 1851 1662 36 0 0 chr1 166058810 166059003 -31136429 + B2_Mm1a SINE B2 1 193 0 1 1851 26 30 0 0 chr1 166059024 166059057 -31136375 + AT_rich Low_complexity Low_complexity 1 33 0 1 1851 423 274 18 0 chr1 166060617 166060730 -31134702 + PB1D9 SINE Alu 5 119 -1 1 1851 883 290 31 23 chr1 166061133 166061391 -31134041 + B4A SINE B4 1 260 -32 1 1851 198 103 0 0 chr1 166061395 166061424 -31134008 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1851 330 152 0 0 chr1 166063178 166063237 -31132195 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1851 373 316 117 5 chr1 166063709 166063922 -31131510 + L1MB3 LINE L1 5888 6124 -59 1 1851 351 0 0 0 chr1 166065232 166065271 -31130161 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1851 534 16 0 0 chr1 166065921 166065984 -31129448 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1851 252 0 0 0 chr1 166065984 166066012 -31129420 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1851 240 250 5 0 chr1 166066410 166066466 -31128966 - MIRc SINE MIR -135 133 73 1 1851 240 302 83 52 chr1 166067545 166067737 -31127695 - MIRc SINE MIR -6 262 65 1 1851 409 343 11 11 chr1 166067963 166068143 -31127289 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1 231 692 281 36 76 chr1 166068152 166068456 -31126976 - B4A SINE B4 0 292 1 1 1852 229 316 52 19 chr1 166068786 166068941 -31126491 - MIRb SINE MIR -55 213 54 1 1852 219 69 0 0 chr1 166069470 166069499 -31125933 + (TCC)n Simple_repeat Simple_repeat 1 29 0 1 1852 3620 18 0 0 chr1 166071002 166071398 -31124034 - MTA_Mm LTR MaLR 0 396 1 1 1852 727 311 42 38 chr1 166072321 166072609 -31122823 - B4A SINE B4 -2 290 2 1 1852 21 0 0 0 chr1 166072769 166072790 -31122642 + AT_rich Low_complexity Low_complexity 1 21 0 1 1852 223 49 49 0 chr1 166074222 166074263 -31121169 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1852 211 283 0 19 chr1 166075256 166075310 -31120122 + MER5B DNA MER1_type 3 55 -123 1 1852 678 213 0 0 chr1 166075377 166075527 -31119905 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 1852 887 73 8 0 chr1 166075699 166075823 -31119609 + (GA)n Simple_repeat Simple_repeat 1 125 0 1 1852 1234 42 12 6 chr1 166076767 166076935 -31118497 + L1Md_F2 LINE L1 6414 6582 0 1 1852 235 296 0 27 chr1 166078330 166078403 -31117029 + ID4 SINE ID 2 72 -11 1 1852 318 284 24 0 chr1 166079331 166079458 -31115974 + CT-rich Low_complexity Low_complexity 1 130 0 1 1852 624 14 0 0 chr1 166080389 166080462 -31114970 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1852 204 97 0 0 chr1 166080473 166080504 -31114928 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 1852 449 204 35 69 chr1 166080862 166080978 -31114454 - PB1D9 SINE Alu -8 112 1 1 1852 275 164 16 0 chr1 166081049 166081110 -31114322 + G-rich Low_complexity Low_complexity 2 63 0 1 1852 228 135 0 0 chr1 166082328 166082365 -31113067 + (GGA)n Simple_repeat Simple_repeat 1 37 0 1 1852 378 0 0 0 chr1 166082365 166082407 -31113025 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1852 229 232 54 0 chr1 166083601 166083657 -31111775 + L1MA9 LINE L1 6046 6104 -208 1 1852 23 33 0 0 chr1 166084555 166084585 -31110847 + AT_rich Low_complexity Low_complexity 1 30 0 1 1852 233 301 106 10 chr1 166084677 166084781 -31110651 - PB1D10 SINE Alu -2 115 2 1 1852 23 0 0 0 chr1 166084787 166084810 -31110622 + AT_rich Low_complexity Low_complexity 1 23 0 1 1852 756 239 19 0 chr1 166084854 166085009 -31110423 + RSINE1 SINE B4 3 160 -5 1 1852 362 312 108 6 chr1 166085078 166085236 -31110196 - MER45A DNA Tip100 -4 174 1 1 1852 200 35 35 0 chr1 166085534 166085563 -31109869 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1 1852 959 212 36 36 chr1 166086611 166086836 -31108596 + URR1B DNA MER1_type 1 225 0 1 1852 209 321 0 12 chr1 166089616 166089698 -31105734 + MIR SINE MIR 34 114 -94 1 1852 729 308 138 70 chr1 166090041 166090094 -31105338 - MLT1D LTR MaLR -16 489 440 1 1852 396 269 9 18 chr1 166090094 166090204 -31105228 + PB1D10 SINE Alu 1 109 -8 1 1852 729 308 138 70 chr1 166090204 166090608 -31104824 - MLT1D LTR MaLR -66 439 1 1 1852 193 277 0 0 chr1 166091099 166091146 -31104286 + L2b LINE L2 3013 3059 -316 1 1852 411 21 0 0 chr1 166091504 166091552 -31103880 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 1 1852 983 275 143 3 chr1 166092583 166092897 -31102535 + MTD LTR MaLR 46 403 -16 1 1852 389 293 152 70 chr1 166093736 166093993 -31101439 + B4A SINE B4 5 282 -10 1 1852 450 0 0 0 chr1 166094023 166094073 -31101359 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1852 182 174 22 0 chr1 166094267 166094313 -31101119 + CT-rich Low_complexity Low_complexity 2 48 0 1 1852 381 109 0 0 chr1 166094336 166094400 -31101032 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1852 244 288 0 0 chr1 166094404 166094470 -31100962 - ID2 SINE ID -13 70 5 1 1852 27 73 0 0 chr1 166094541 166094596 -31100836 + AT_rich Low_complexity Low_complexity 1 55 0 1 1852 6349 84 1 20 chr1 166094716 166095220 -31100212 + L1VL2 LINE L1 157 657 -5678 1 1852 1109 83 0 0 chr1 166095220 166095357 -31100075 + B1_Mm SINE Alu 1 137 -10 1 1852 216 0 0 0 chr1 166095357 166095381 -31100051 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1852 6349 72 44 12 chr1 166095387 166096528 -31098904 + L1VL2 LINE L1 658 1826 -1789 1 1852 289 229 0 0 chr1 166096684 166096745 -31098687 - PB1D10 SINE Alu -14 103 43 1 1852 29 47 0 0 chr1 166097593 166097636 -31097796 + AT_rich Low_complexity Low_complexity 1 43 0 1 1852 404 313 44 35 chr1 166099333 166099574 -31095858 + MLT1A0 LTR MaLR 1 243 -122 1 1852 254 243 39 35 chr1 166099739 166099827 -31095605 + PB1D10 SINE Alu 14 104 -16 1 1852 378 0 0 0 chr1 166099860 166099902 -31095530 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1852 495 48 0 0 chr1 166099902 166099963 -31095469 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1852 528 274 132 47 chr1 166100202 166100459 -31094973 + B4A SINE B4 14 292 0 1 1852 315 331 73 67 chr1 166101485 166101986 -31093446 - L2b LINE L2 -9 3378 2882 1 1852 225 261 174 14 chr1 166102441 166102585 -31092847 + L1MEf LINE L1 1022 1188 -5012 1 1852 1804 202 190 50 chr1 166102630 166103111 -31092321 + Lx7 LINE L1 6338 6891 -805 1 1852 843 10 0 0 chr1 166103111 166103207 -31092225 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 1852 1804 202 190 50 chr1 166103207 166103225 -31092207 + Lx7 LINE L1 6892 6907 -789 1 1852 456 91 0 0 chr1 166104882 166104948 -31090484 + (TTGG)n Simple_repeat Simple_repeat 4 69 0 1 1852 268 274 41 0 chr1 166104972 166105045 -31090387 - PB1D7 SINE Alu -42 78 3 1 1852 476 269 56 7 chr1 166106079 166106221 -31089211 - B1F SINE Alu 0 149 1 1 1852 222 37 0 0 chr1 166106909 166106936 -31088496 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1852 259 246 62 85 chr1 166106957 166107086 -31088346 - MLT1A1 LTR MaLR -12 396 271 1 1852 219 103 0 0 chr1 166107451 166107490 -31087942 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1852 572 335 0 0 chr1 166107833 166107997 -31087435 + RSINE1 SINE B4 2 165 0 1 1852 315 333 11 0 chr1 166109164 166109251 -31086181 + MER81 DNA AcHobo 23 110 -4 1 1852 2135 182 52 46 chr1 166109723 166110247 -31085185 - RLTR11A2 LTR ERVK 0 527 1 1 1852 619 285 0 0 chr1 166110727 166110871 -31084561 - B1F SINE Alu 0 149 6 1 1852 498 329 69 48 chr1 166112267 166112688 -31082744 + L1MC4a LINE L1 5399 5828 -2054 1 1852 492 269 17 0 chr1 166113748 166113867 -31081565 + RSINE1 SINE B4 4 124 -41 1 1852 253 366 30 36 chr1 166113957 166114124 -31081308 - L4 LINE RTE -668 1361 1196 1 1852 243 0 0 0 chr1 166115279 166115306 -31080126 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1852 914 224 4 61 chr1 166115908 166116136 -31079296 - B3 SINE B2 0 216 2 1 1852 798 279 62 5 chr1 166116186 166116395 -31079037 - ID_B1 SINE B4 0 224 4 1 1852 632 84 0 21 chr1 166117140 166117237 -31078195 + (TCCCC)n Simple_repeat Simple_repeat 4 98 0 1 1852 10758 138 11 12 chr1 166117310 166119101 -31076331 - ORR1A2-int LTR MaLR -3 1789 1 1 1852 2566 86 0 0 chr1 166119101 166119428 -31076004 - ORR1A2 LTR MaLR 0 327 1 1 1852 379 295 124 124 chr1 166120700 166120835 -31074597 - B4 SINE B4 -25 267 132 1 1852 1234 106 28 0 chr1 166120835 166121014 -31074418 - B2_Mm2 SINE B2 -7 188 5 1 1852 379 295 124 124 chr1 166121014 166121025 -31074407 - B4 SINE B4 -161 131 124 1 1852 468 0 0 0 chr1 166121025 166121077 -31074355 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1852 379 295 124 124 chr1 166121077 166121196 -31074236 - B4 SINE B4 -169 123 1 1 1852 283 336 24 8 chr1 166121269 166121389 -31074043 + MIRb SINE MIR 21 151 -117 1 1852 238 343 7 56 chr1 166121804 166121946 -31073486 - Charlie10 DNA MER1_type -2671 151 17 1 1852 321 186 39 12 chr1 166124962 166125048 -31070384 - L1M2 LINE L1 -990 5150 5062 1 1852 591 209 70 47 chr1 166125398 166125487 -31069945 - B3 SINE B2 0 216 121 1 1852 333 0 0 0 chr1 166125487 166125524 -31069908 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 1 1852 591 209 70 47 chr1 166125524 166125605 -31069827 - B3 SINE B2 -96 120 43 1 1852 1435 39 79 0 chr1 166127083 166127242 -31068190 + B2_Mm1t SINE B2 2 160 -33 1 1852 459 0 0 0 chr1 166127242 166127293 -31068139 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 1852 1435 39 79 0 chr1 166127293 166127311 -31068121 + B2_Mm1t SINE B2 161 191 -2 1 1852 307 326 47 120 chr1 166128140 166128440 -31066992 - ORR1E LTR MaLR -5 354 77 1 1852 891 138 14 0 chr1 166129154 166129292 -31066140 + B1_Mus1 SINE Alu 1 140 -8 1 1852 180 0 0 0 chr1 166130493 166130513 -31064919 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 1 1852 222 37 0 0 chr1 166130610 166130637 -31064795 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1852 348 24 0 0 chr1 166130638 166130679 -31064753 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1 1852 236 257 81 0 chr1 166130937 166131011 -31064421 - ID4 SINE ID -2 81 2 1 1852 247 327 9 37 chr1 166131137 166131245 -31064187 + PB1D10 SINE Alu 7 111 -6 2 1852 186 189 0 0 chr1 166131294 166131331 -31064101 + GA-rich Low_complexity Low_complexity 2 38 0 2 1852 183 215 179 60 chr1 166131385 166131469 -31063963 + MIRb SINE MIR 172 265 -3 2 1852 291 267 54 70 chr1 166132635 166132764 -31062668 + RSINE1 SINE B4 39 165 0 2 1852 376 222 16 0 chr1 166132925 166133021 -31062411 + PB1D10 SINE Alu 14 111 -6 2 1852 272 83 21 0 chr1 166133376 166133424 -31062008 + (TCCCC)n Simple_repeat Simple_repeat 4 52 0 2 1852 558 139 33 7 chr1 166134147 166134299 -31061133 + (CA)n Simple_repeat Simple_repeat 2 157 0 2 1852 350 83 0 0 chr1 166134299 166134347 -31061085 + HAL1-3A_ME LINE L1 1976 2023 -835 2 1852 234 211 58 0 chr1 166134370 166134422 -31061010 + B1F1 SINE Alu 52 106 -43 2 1852 459 293 47 0 chr1 166136787 166136937 -31058495 - ID_B1 SINE B4 -65 159 3 2 1852 21 36 0 0 chr1 166139006 166139034 -31056398 + AT_rich Low_complexity Low_complexity 1 28 0 2 1852 211 348 34 34 chr1 166139300 166139446 -31055986 - MIRb SINE MIR -81 187 42 2 1852 528 318 57 82 chr1 166140519 166141095 -31054337 - L1MDa LINE L1 -2406 4131 3570 2 1852 394 293 114 11 chr1 166141138 166141314 -31054118 - L1MDa LINE L1 -5617 1016 823 2 1852 418 329 43 68 chr1 166141506 166141741 -31053691 - L1MDa LINE L1 -6390 243 15 2 1852 225 0 0 0 chr1 166142320 166142345 -31053087 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1852 665 200 51 12 chr1 166142593 166142779 -31052653 - B3 SINE B2 -7 188 5 2 1852 1387 161 9 0 chr1 166144928 166145152 -31050280 - URR1A DNA MER1_type 0 226 1 2 1852 200 241 0 17 chr1 166145606 166145665 -31049767 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1852 393 22 0 0 chr1 166147093 166147139 -31048293 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1852 262 316 85 58 chr1 166148517 166148705 -31046727 - MIRb SINE MIR 0 268 76 2 1852 213 39 0 0 chr1 166148839 166148865 -31046567 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1852 3861 57 6 8 chr1 166148902 166149400 -31046032 + L1_Mus3 LINE L1 6136 6632 -6 2 1852 212 129 0 0 chr1 166150207 166150238 -31045194 + RSINE1 SINE B4 15 45 -120 2 1852 336 299 23 0 chr1 166150269 166150356 -31045076 + RSINE1 SINE B4 43 131 -34 2 1852 342 0 0 0 chr1 166151258 166151296 -31044136 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1852 261 262 34 45 chr1 166151352 166151440 -31043992 - MLT1H1 LTR MaLR -281 274 188 2 1852 6642 43 10 0 chr1 166151752 166152545 -31042887 - L1Md_T LINE L1 0 6582 5782 2 1852 1308 103 11 0 chr1 166152764 166152948 -31042484 - B2_Mm1t SINE B2 -7 186 1 2 1852 414 0 0 0 chr1 166152998 166153044 -31042388 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1852 272 130 109 0 chr1 166153044 166153090 -31042342 - B1_Mur2 SINE Alu -22 127 77 2 1852 2357 39 3 0 chr1 166153654 166153937 -31041495 + L1Md_F2 LINE L1 5241 5524 -359 2 1852 5722 44 63 0 chr1 166153937 166154635 -31040797 + RLTR4_Mm LTR ERV1 1 742 0 2 1852 20749 15 1 0 chr1 166154635 166156934 -31038498 + RLTR4_MM-int LTR ERV1 1 2300 -5301 2 1852 14511 26 3 0 chr1 166156909 166158551 -31036881 + RLTR4_MM-int LTR ERV1 3996 5642 -1959 2 1852 2092 44 24 0 chr1 166158539 166158790 -31036642 + RLTR4_MM-int LTR ERV1 5868 6124 -1477 2 1852 1786 39 0 0 chr1 166158782 166158985 -31036447 + RLTR4_MM-int LTR ERV1 7399 7601 0 2 1852 5722 44 63 0 chr1 166158985 166159683 -31035749 + RLTR4_Mm LTR ERV1 1 742 0 2 1852 594 30 0 0 chr1 166159683 166159749 -31035683 + L1Md_F2 LINE L1 5521 5586 -297 2 1852 8244 51 1 1 chr1 166159749 166160745 -31034687 + L1Md_F2 LINE L1 5587 6582 0 2 1852 803 267 49 46 chr1 166161079 166161405 -31034027 - RLTR15 LTR ERVK -30 329 3 2 1852 456 294 93 14 chr1 166162172 166162386 -31033046 + Cheshire DNA MER1_type 1356 1586 -834 2 1852 1921 144 47 33 chr1 166162433 166162798 -31032634 - ORR1C1 LTR MaLR -8 370 1 2 1852 875 150 14 7 chr1 166162864 166163005 -31032427 + B1_Mur4 SINE Alu 2 143 -7 2 1852 250 282 70 0 chr1 166163283 166163354 -31032078 + ID4_ SINE ID 6 81 -2 2 1852 574 295 176 4 chr1 166163433 166163671 -31031761 + B4A SINE B4 2 280 -12 2 1852 210 303 66 0 chr1 166165191 166165267 -31030165 - ID4 SINE ID 0 83 3 2 1852 391 297 109 89 chr1 166165648 166165951 -31029481 + Lx8 LINE L1 7163 7471 -2 2 1852 231 250 12 36 chr1 166166760 166166843 -31028589 + L1ME1 LINE L1 6088 6168 -11 2 1852 242 29 29 0 chr1 166167019 166167054 -31028378 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1852 1325 106 11 0 chr1 166167054 166167242 -31028190 - B2_Mm1t SINE B2 -1 192 3 2 1852 1297 75 26 16 chr1 166167409 166167600 -31027832 + B2_Mm2 SINE B2 1 193 -2 2 1852 187 157 19 19 chr1 166167848 166167900 -31027532 + (TAA)n Simple_repeat Simple_repeat 3 54 0 2 1852 22 0 0 0 chr1 166169299 166169321 -31026111 + AT_rich Low_complexity Low_complexity 1 22 0 2 1852 477 0 0 0 chr1 166169578 166169631 -31025801 + (AATAG)n Simple_repeat Simple_repeat 4 56 0 2 1852 21 0 0 0 chr1 166169699 166169720 -31025712 + AT_rich Low_complexity Low_complexity 1 21 0 2 1852 457 202 20 10 chr1 166169733 166169833 -31025599 + B3 SINE B2 1 101 -115 2 1852 1055 71 28 7 chr1 166170357 166170489 -31024943 + B1_Mm SINE Alu 3 138 -9 2 1852 186 43 0 0 chr1 166170489 166170512 -31024920 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1852 3288 48 2 2 chr1 166170540 166170936 -31024496 + MTA_Mm LTR MaLR 1 396 0 2 1852 384 74 0 0 chr1 166171030 166171040 -31024392 + (TTC)n Simple_repeat Simple_repeat 2 11 0 2 1852 1134 85 0 0 chr1 166171040 166171217 -31024215 + (TCC)n Simple_repeat Simple_repeat 2 178 0 2 1852 384 74 0 0 chr1 166171217 166171260 -31024172 + (TTC)n Simple_repeat Simple_repeat 1 43 0 2 1852 219 103 0 0 chr1 166171257 166171296 -31024136 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 2 1852 197 375 0 0 chr1 166171400 166171472 -31023960 - L2 LINE L2 -565 2854 2783 2 1852 634 261 101 5 chr1 166172383 166172602 -31022830 - MER2 DNA MER2_type -105 240 1 2 1852 255 338 0 0 chr1 166172984 166173052 -31022380 + ID4_ SINE ID 8 75 -8 2 1852 317 288 0 0 chr1 166173515 166173595 -31021837 + ID4_ SINE ID 4 83 0 2 1852 332 372 75 28 chr1 166173672 166174034 -31021398 - L1M5 LINE L1 -1286 4860 4482 2 1852 27 0 0 0 chr1 166174114 166174141 -31021291 + AT_rich Low_complexity Low_complexity 1 27 0 2 1852 240 288 0 17 chr1 166174318 166174378 -31021054 - ID4 SINE ID 0 83 25 2 1852 371 310 74 43 chr1 166174463 166174625 -31020807 - MER20 DNA MER1_type -52 167 1 2 1852 47 53 0 0 chr1 166174964 166175039 -31020393 + AT_rich Low_complexity Low_complexity 1 75 0 2 1852 837 246 107 60 chr1 166175329 166175756 -31019676 + L1MB5 LINE L1 5206 5642 -538 2 1852 240 100 0 0 chr1 166175758 166175798 -31019634 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1852 468 303 151 24 chr1 166175804 166176227 -31019205 + L1MB5 LINE L1 5697 6173 -1 2 1852 318 288 37 12 chr1 166176237 166176318 -31019114 + 5S rRNA rRNA 7 89 -32 2 1852 426 39 0 0 chr1 166176318 166176370 -31019062 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2 1852 462 246 126 42 chr1 166176380 166176571 -31018861 - MLT1E2 LTR MaLR -3 624 418 2 1852 358 318 39 0 chr1 166176603 166176732 -31018700 - B1F1 SINE Alu -6 143 10 2 1852 439 285 192 67 chr1 166176744 166177102 -31018330 - MLT1E2 LTR MaLR -220 407 5 2 1852 245 247 111 0 chr1 166177569 166177650 -31017782 - Charlie1 DNA MER1_type -2542 239 150 2 1852 248 229 17 60 chr1 166179054 166179170 -31016262 + (CGGGG)n Simple_repeat Simple_repeat 3 113 0 2 1852 209 195 0 0 chr1 166179895 166179936 -31015496 + (TATG)n Simple_repeat Simple_repeat 4 44 0 2 1852 669 262 6 24 chr1 166181903 166182071 -31013361 - B3A SINE B2 -19 179 15 2 1852 254 250 75 0 chr1 166182091 166182171 -31013261 - PB1D10 SINE Alu -7 110 25 2 1852 204 40 0 0 chr1 166182439 166182464 -31012968 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1852 381 103 0 0 chr1 166182464 166182531 -31012901 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1852 333 0 0 0 chr1 166183651 166183688 -31011744 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2 1852 309 202 270 0 chr1 166183689 166183778 -31011654 - PB1 SINE Alu -10 117 5 2 1852 477 297 149 10 chr1 166184179 166184373 -31011059 - L1MA4A LINE L1 -305 5992 5772 2 1852 281 152 0 0 chr1 166184693 166184739 -31010693 + B1_Mur1 SINE Alu 66 111 -38 2 1852 376 336 0 0 chr1 166185174 166185287 -31010145 + MER47B DNA MER2_type 136 248 -170 2 1852 815 221 146 65 chr1 166185380 166185627 -31009805 - B4A SINE B4 -25 267 1 2 1852 526 245 60 17 chr1 166185826 166186029 -31009403 + L1MA6 LINE L1 6098 6297 0 2 1852 652 227 133 44 chr1 166186208 166186411 -31009021 + Lx8 LINE L1 7237 7457 -16 2 1852 387 257 27 0 chr1 166186567 166186692 -31008740 + B1F SINE Alu 5 132 -17 2 1852 188 299 42 56 chr1 166187681 166187752 -31007680 + L2c LINE L2 3306 3375 -12 2 1852 1258 27 0 0 chr1 166187844 166187990 -31007442 - B1_Mus2 SINE Alu 0 147 2 2 1852 360 0 0 0 chr1 166188252 166188292 -31007140 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1852 384 246 34 42 chr1 166189164 166189283 -31006149 + PB1D7 SINE Alu 3 120 0 2 1852 211 384 29 58 chr1 166189937 166190111 -31005321 + ID_B1 SINE B4 2 170 -54 2 1852 278 327 37 18 chr1 166190029 166190138 -31005294 + PB1D10 SINE Alu 7 117 0 2 1852 441 36 0 0 chr1 166190618 166190673 -31004759 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1852 213 309 59 49 chr1 166190691 166190793 -31004639 - MIR SINE MIR -154 108 6 2 1852 355 333 98 13 chr1 166191413 166191638 -31003794 - MIR SINE MIR -5 257 14 2 1852 231 238 62 12 chr1 166191665 166191746 -31003686 + MIR SINE MIR 158 242 -20 2 1852 550 211 18 0 chr1 166193116 166193230 -31002202 - B3 SINE B2 -100 116 1 2 1852 25 31 0 0 chr1 166195461 166195493 -30999939 + AT_rich Low_complexity Low_complexity 1 32 0 2 1852 3758 32 7 0 chr1 166196508 166196941 -30998491 + RLTR10C LTR ERVK 1 436 0 2 1852 311 299 48 62 chr1 166197933 166198079 -30997353 + B1F1 SINE Alu 5 148 -1 2 1852 790 38 9 9 chr1 166198978 166199085 -30996347 + (TTTTC)n Simple_repeat Simple_repeat 4 110 0 3 1852 384 190 0 0 chr1 166199085 166199164 -30996268 + CT-rich Low_complexity Low_complexity 4 82 0 3 1853 702 295 43 77 chr1 166199759 166200396 -30995036 - L1MA4 LINE L1 -362 5938 5354 3 1853 487 230 0 0 chr1 166200575 166200675 -30994757 + RSINE1 SINE B4 33 132 -33 3 1853 844 164 13 20 chr1 166200745 166200894 -30994538 - B1_Mur4 SINE Alu 0 150 3 3 1853 1328 180 98 7 chr1 166200974 166201281 -30994151 - RMER16 LTR ERVK 0 533 199 3 1853 192 77 0 0 chr1 166202022 166202048 -30993384 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 3 1853 527 272 14 14 chr1 166202534 166202672 -30992760 + B1_Mur1 SINE Alu 11 148 -1 3 1853 254 274 65 0 chr1 166202683 166202745 -30992687 + ID4 SINE ID 7 72 -11 3 1853 666 95 0 0 chr1 166202746 166202841 -30992591 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 1853 581 178 72 29 chr1 166202928 166203067 -30992365 + B1_Mur4 SINE Alu 6 150 0 3 1853 183 100 0 0 chr1 166205076 166205106 -30990326 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1853 21 0 0 0 chr1 166205118 166205139 -30990293 + AT_rich Low_complexity Low_complexity 1 21 0 3 1853 244 48 48 0 chr1 166206407 166206449 -30988983 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 3 1853 1096 89 6 0 chr1 166207666 166207823 -30987609 + B2_Mm2 SINE B2 1 158 -37 3 1853 387 0 0 0 chr1 166207824 166207867 -30987565 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1853 324 64 0 0 chr1 166208644 166208691 -30986741 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 1853 1257 124 21 0 chr1 166208888 166209074 -30986358 - B2_Mm2 SINE B2 -5 190 1 3 1853 486 120 0 0 chr1 166209285 166209360 -30986072 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1853 235 242 16 0 chr1 166211384 166211446 -30983986 + ID4 SINE ID 6 68 -15 3 1853 21 36 0 0 chr1 166211923 166211951 -30983481 + AT_rich Low_complexity Low_complexity 1 28 0 3 1853 209 184 0 0 chr1 166212538 166212576 -30982856 + GA-rich Low_complexity Low_complexity 1 38 0 3 1853 1083 65 6 19 chr1 166212735 166212892 -30982540 - B2_Mm2 SINE B2 -30 165 11 3 1853 912 184 42 28 chr1 166213174 166213387 -30982045 - B3 SINE B2 0 216 1 3 1853 556 283 59 0 chr1 166213415 166213567 -30981865 + B3A SINE B2 3 163 -35 3 1853 1344 204 79 8 chr1 166214593 166214948 -30980484 - L1_Mur3 LINE L1 -7055 657 278 3 1853 334 353 50 44 chr1 166214963 166215123 -30980309 + B2_Mm2 SINE B2 2 162 -33 3 1853 493 257 104 22 chr1 166215518 166215701 -30979731 + B3A SINE B2 1 198 0 3 1853 432 0 0 0 chr1 166216318 166216366 -30979066 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1853 269 155 17 0 chr1 166216674 166216732 -30978700 + CT-rich Low_complexity Low_complexity 3 61 0 3 1853 450 0 0 0 chr1 166217002 166217052 -30978380 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1853 617 226 39 0 chr1 166218136 166218291 -30977141 + RSINE1 SINE B4 4 164 -1 3 1853 210 192 19 0 chr1 166218572 166218624 -30976808 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1853 479 198 18 18 chr1 166218712 166218825 -30976607 - PB1D10 SINE Alu 0 117 5 3 1853 762 293 147 4 chr1 166219271 166219741 -30975691 - L1MB5 LINE L1 -9 6165 5629 3 1853 669 327 37 44 chr1 166220764 166221058 -30974374 - B4A SINE B4 0 292 1 3 1853 303 220 114 44 chr1 166221096 166221210 -30974222 - L1MB5 LINE L1 -976 5164 5043 3 1853 22 56 0 0 chr1 166221517 166221553 -30973879 + AT_rich Low_complexity Low_complexity 1 36 0 3 1853 3655 40 18 2 chr1 166223537 166223984 -30971448 + L1Md_F3 LINE L1 6131 6584 0 3 1853 1161 35 21 0 chr1 166225580 166225723 -30969709 + B1_Mus2 SINE Alu 1 146 -1 3 1853 806 239 168 20 chr1 166226333 166226691 -30968741 - L1M5 LINE L1 -2293 3853 3443 3 1853 712 282 6 6 chr1 166226724 166226906 -30968526 - B3A SINE B2 -15 183 2 3 1853 216 0 0 0 chr1 166226941 166226965 -30968467 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1853 1190 41 0 7 chr1 166226965 166227112 -30968320 - B1_Mm SINE Alu 0 147 2 3 1853 1359 292 10 25 chr1 166227275 166227672 -30967760 - Lx6 LINE L1 0 7460 7070 3 1853 238 209 60 52 chr1 166227720 166227836 -30967596 - L1MD LINE L1 -2993 3153 3037 3 1853 280 292 25 58 chr1 166227860 166227980 -30967452 - PB1D10 SINE Alu 0 117 2 3 1853 219 238 0 0 chr1 166229347 166229389 -30966043 + polypurine Low_complexity Low_complexity 3 44 0 3 1853 1061 142 57 38 chr1 166229951 166230163 -30965269 + Lx7 LINE L1 7481 7696 0 3 1853 413 101 164 5 chr1 166230265 166230373 -30965059 - B2_Mm2 SINE B2 -6 189 46 3 1853 1328 91 23 0 chr1 166230400 166230576 -30964856 - B2_Mm2 SINE B2 -14 181 2 3 1853 646 241 89 68 chr1 166230631 166230912 -30964520 - B4A SINE B4 -5 287 1 3 1853 21 0 0 0 chr1 166230980 166231001 -30964431 + AT_rich Low_complexity Low_complexity 1 21 0 3 1853 3033 120 59 8 chr1 166231216 166231710 -30963722 - RLTR28 LTR ERVL -4 520 2 3 1853 914 71 0 16 chr1 166231901 166232029 -30963403 - B1_Mus1 SINE Alu 0 148 23 3 1853 1206 162 53 14 chr1 166232934 166233215 -30962217 + RMER15 LTR ERVL 1 292 -283 3 1853 324 0 0 0 chr1 166233325 166233361 -30962071 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1853 396 81 0 31 chr1 166235329 166235393 -30960039 - B1_Mus2 SINE Alu -1 146 85 3 1853 566 232 22 7 chr1 166235393 166235532 -30959900 - B1F1 SINE Alu -8 141 1 3 1853 658 181 41 20 chr1 166235651 166235798 -30959634 - URR1A DNA MER1_type 0 226 77 3 1853 353 143 182 0 chr1 166236382 166236459 -30958973 + B1_Mur4 SINE Alu 54 144 -6 3 1853 206 333 18 0 chr1 166238447 166238504 -30956928 + MER5A DNA MER1_type 111 168 -21 3 1853 227 31 31 0 chr1 166238968 166239000 -30956432 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1853 216 0 0 0 chr1 166239004 166239028 -30956404 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1853 1165 36 0 0 chr1 166239028 166239165 -30956267 - B1_Mm SINE Alu -10 137 1 3 1853 216 0 0 0 chr1 166239317 166239341 -30956091 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 1853 812 244 112 15 chr1 166239571 166239767 -30955665 + B4 SINE B4 9 223 -69 3 1853 361 319 0 11 chr1 166239782 166239874 -30955558 + RSINE1 SINE B4 71 161 -4 3 1853 298 167 0 0 chr1 166239972 166240020 -30955412 + B1F1 SINE Alu 89 136 -13 3 1853 387 41 0 0 chr1 166240020 166240069 -30955363 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1853 656 56 11 0 chr1 166240072 166240161 -30955271 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 1853 1354 65 16 21 chr1 166240714 166240903 -30954529 + B2_Mm2 SINE B2 1 188 -7 3 1853 399 252 98 15 chr1 166241052 166241185 -30954247 - L1M5 LINE L1 -446 5678 5535 3 1853 444 19 0 0 chr1 166241240 166241293 -30954139 + (CATA)n Simple_repeat Simple_repeat 3 55 0 3 1853 405 197 144 50 chr1 166242058 166242218 -30953214 + Lx8 LINE L1 7270 7444 -29 3 1853 2458 285 79 14 chr1 166242444 166243244 -30952188 - Lx8 LINE L1 -384 7089 6238 3 1853 401 226 49 0 chr1 166243337 166243439 -30951993 - BC1_Mm scRNA scRNA -44 108 2 3 1853 1088 54 0 98 chr1 166243503 166243666 -30951766 - B1_Mus2 SINE Alu 0 147 1 3 1853 258 136 0 0 chr1 166243870 166243914 -30951518 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 3 1853 250 295 0 25 chr1 166244099 166244179 -30951253 + C-rich Low_complexity Low_complexity 5 82 0 3 1853 441 240 39 20 chr1 166244865 166245018 -30950414 + Lx9 LINE L1 7488 7643 -1 3 1853 936 130 173 0 chr1 166245051 166245236 -30950196 + URR1B DNA MER1_type 1 217 -8 3 1853 846 228 46 0 chr1 166245498 166245695 -30949737 + B3 SINE B2 5 210 -6 3 1853 192 71 0 0 chr1 166245784 166245807 -30949625 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 1853 357 24 0 0 chr1 166245807 166245849 -30949583 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1853 324 0 0 0 chr1 166246114 166246150 -30949282 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1853 384 22 0 0 chr1 166246150 166246194 -30949238 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1853 854 331 83 42 chr1 166248872 166249039 -30946393 + L1M4 LINE L1 4500 4680 -1466 3 1853 1145 256 10 43 chr1 166249039 166249341 -30946091 - B4A SINE B4 0 292 1 3 1853 854 331 83 42 chr1 166249341 166249766 -30945666 + L1M4 LINE L1 4681 5116 -1030 3 1853 393 335 102 38 chr1 166249970 166250284 -30945148 - LTR33 LTR ERVL -181 334 1 3 1853 394 193 39 0 chr1 166251328 166251433 -30943999 - B1F SINE Alu -8 142 32 3 1853 216 0 0 0 chr1 166252296 166252320 -30943112 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1853 1556 37 26 0 chr1 166252740 166252929 -30942503 - B2_Mm2 SINE B2 0 195 2 3 1853 451 128 11 11 chr1 166253937 166254024 -30941408 + CT-rich Low_complexity Low_complexity 2 88 0 3 1853 207 162 0 0 chr1 166254211 166254248 -30941184 + GA-rich Low_complexity Low_complexity 5 41 0 3 1853 662 287 43 9 chr1 166254258 166254490 -30940942 - L1MA4 LINE L1 -368 5932 5693 3 1853 554 271 50 7 chr1 166254530 166254671 -30940761 - B1_Mur1 SINE Alu -1 148 2 3 1853 1687 36 0 0 chr1 166254716 166254909 -30940523 - B2_Mm1a SINE B2 0 193 1 3 1853 577 241 35 0 chr1 166255829 166255970 -30939462 + Lx9 LINE L1 7348 7493 -151 3 1853 22 35 0 0 chr1 166256092 166256121 -30939311 + AT_rich Low_complexity Low_complexity 1 29 0 3 1853 257 261 215 11 chr1 166256470 166256563 -30938869 + ID_B1 SINE B4 105 216 -8 3 1853 253 280 78 20 chr1 166257487 166257589 -30937843 + MIR3 SINE MIR 48 155 -53 4 1853 306 0 0 0 chr1 166257700 166257734 -30937698 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1853 650 285 96 5 chr1 166258539 166258747 -30936685 + B4A SINE B4 2 228 -64 4 1853 245 232 54 0 chr1 166258747 166258803 -30936629 + B1_Mus2 SINE Alu 1 59 -88 4 1853 606 207 0 0 chr1 166258806 166258980 -30936452 + GA-rich Low_complexity Low_complexity 2 175 0 4 1853 611 214 0 5 chr1 166258991 166259389 -30936043 + GA-rich Low_complexity Low_complexity 1 396 0 4 1853 632 109 0 0 chr1 166259392 166259484 -30935948 + B1_Mus2 SINE Alu 40 131 -16 4 1853 536 185 264 70 chr1 166259770 166259997 -30935435 - Lx7 LINE L1 0 7696 7426 4 1853 26 0 0 0 chr1 166261391 166261417 -30934015 + AT_rich Low_complexity Low_complexity 1 26 0 4 1853 434 273 0 18 chr1 166261592 166261704 -30933728 + PB1D10 SINE Alu 7 116 -1 4 1853 686 318 39 19 chr1 166261706 166261963 -30933469 + B4A SINE B4 2 263 -29 4 1853 484 264 107 0 chr1 166262241 166262400 -30933032 + B3A SINE B2 1 176 -22 4 1853 24 32 0 0 chr1 166263022 166263053 -30932379 + AT_rich Low_complexity Low_complexity 1 31 0 4 1853 921 255 0 5 chr1 166263585 166263802 -30931630 + ID_B1 SINE B4 9 224 0 4 1853 255 122 0 0 chr1 166263803 166263852 -30931580 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1853 437 231 29 9 chr1 166264045 166264150 -30931282 + L1MA4 LINE L1 5796 5902 -398 4 1853 414 151 0 0 chr1 166264182 166264255 -30931177 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 4 1853 23 54 0 0 chr1 166264459 166264496 -30930936 + AT_rich Low_complexity Low_complexity 1 37 0 4 1853 423 0 0 0 chr1 166265062 166265109 -30930323 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1853 2123 154 78 50 chr1 166265870 166265882 -30929550 - RLTR12B LTR ERVK -15 513 502 4 1853 486 46 0 0 chr1 166265882 166265947 -30929485 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1853 2123 154 78 50 chr1 166265947 166266433 -30928999 - RLTR12B LTR ERVK -27 501 1 4 1853 347 316 88 0 chr1 166266433 166266524 -30928908 - B4A SINE B4 -191 101 1 4 1853 1561 179 107 0 chr1 166266591 166266910 -30928522 + MTC LTR MaLR 1 353 -68 4 1853 1462 152 82 11 chr1 166266892 166267171 -30928261 - ORR1B1 LTR MaLR -95 299 1 4 1853 384 22 0 0 chr1 166268080 166268125 -30927307 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1853 680 309 0 0 chr1 166268341 166268503 -30926929 + RSINE1 SINE B4 3 164 -1 4 1853 378 0 0 0 chr1 166268513 166268555 -30926877 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1853 395 0 40 0 chr1 166268984 166269034 -30926398 + (TTCCC)n Simple_repeat Simple_repeat 3 54 0 4 1853 375 41 0 0 chr1 166269952 166270001 -30925431 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1853 490 336 27 0 chr1 166270009 166270155 -30925277 + RSINE1 SINE B4 3 152 -13 4 1853 25 0 0 0 chr1 166270208 166270233 -30925199 + AT_rich Low_complexity Low_complexity 1 25 0 4 1853 196 87 20 61 chr1 166270266 166270315 -30925117 + T-rich Low_complexity Low_complexity 2 48 0 4 1853 1160 81 0 7 chr1 166270327 166270476 -30924956 - B1_Mus1 SINE Alu 0 148 1 4 1853 673 224 7 45 chr1 166270480 166270634 -30924798 - B1_Mur1 SINE Alu 0 149 2 4 1853 1146 267 39 100 chr1 166271794 166272252 -30923180 - Lx8 LINE L1 -334 7139 6710 4 1853 847 211 67 0 chr1 166272370 166272564 -30922868 + B3 SINE B2 2 208 -8 4 1853 271 235 44 0 chr1 166272868 166272936 -30922496 + ID4_ SINE ID 2 72 -11 4 1853 23 0 0 0 chr1 166273295 166273318 -30922114 + AT_rich Low_complexity Low_complexity 1 23 0 4 1853 603 92 0 0 chr1 166274296 166274383 -30921049 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 4 1853 410 297 72 26 chr1 166276015 166276167 -30919265 + RSINE1 SINE B4 3 161 -4 4 1853 1263 91 23 0 chr1 166276424 166276600 -30918832 + B2_Mm2 SINE B2 2 181 -14 4 1853 375 201 111 1 chr1 166276634 166276746 -30918686 + L1ME2 LINE L1 5854 5977 -185 4 1853 277 258 89 40 chr1 166277081 166277182 -30918250 - B1F2 SINE Alu -9 140 35 4 1853 1372 30 143 0 chr1 166278273 166278441 -30916991 - B2_Mm1a SINE B2 0 193 2 4 1853 784 242 19 6 chr1 166278550 166278708 -30916724 + B3 SINE B2 3 162 -54 4 1853 195 146 0 0 chr1 166278798 166278839 -30916593 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 4 1853 598 255 27 20 chr1 166279143 166279291 -30916141 + B1F1 SINE Alu 1 149 0 4 1853 389 186 101 8 chr1 166279563 166279682 -30915750 + Lx6 LINE L1 7195 7324 -136 4 1853 7597 154 43 20 chr1 166279696 166279790 -30915642 - Lx3C LINE L1 -1 6975 6879 4 1853 414 0 0 0 chr1 166279790 166279836 -30915596 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1853 7597 151 30 15 chr1 166279836 166281342 -30914090 - Lx3C LINE L1 -98 6878 5346 4 1853 241 242 30 0 chr1 166281512 166281578 -30913854 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1853 5695 24 2 0 chr1 166281589 166282207 -30913225 - L1Md_T LINE L1 0 6582 5964 4 1853 1951 125 14 113 chr1 166282297 166282659 -30912773 - ORR1A4 LTR MaLR -3 326 1 4 1853 262 226 129 0 chr1 166282822 166282884 -30912548 - BC1_Mm scRNA scRNA -82 70 1 4 1853 23 105 0 0 chr1 166283062 166283148 -30912284 + AT_rich Low_complexity Low_complexity 1 86 0 4 1853 283 240 0 94 chr1 166283802 166283908 -30911524 - MER110A LTR ERV1 -304 164 69 4 1853 192 111 0 0 chr1 166283996 166284032 -30911400 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1853 340 303 94 29 chr1 166284473 166284670 -30910762 + MIRb SINE MIR 30 245 -23 4 1853 519 60 0 0 chr1 166285084 166285151 -30910281 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 4 1853 223 148 0 53 chr1 166285154 166285211 -30910221 + CT-rich Low_complexity Low_complexity 1 54 0 4 1853 1376 246 72 49 chr1 166285239 166285667 -30909765 - Lx8 LINE L1 -326 7147 6710 4 1853 1596 54 5 0 chr1 166285806 166285992 -30909440 + B2_Mm1a SINE B2 1 187 -6 4 1853 1057 74 59 0 chr1 166286199 166286334 -30909098 + B1_Mus1 SINE Alu 1 143 -5 4 1853 1253 272 38 15 chr1 166287080 166287419 -30908013 - Lx9 LINE L1 -936 6708 6362 4 1853 504 0 0 0 chr1 166287428 166287484 -30907948 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1853 2836 226 81 78 chr1 166287501 166288625 -30906807 - Lx8 LINE L1 -1688 6008 4856 4 1853 218 284 44 15 chr1 166288788 166288801 -30906631 + ID SINE ID 2 71 -153 4 1853 224 222 36 18 chr1 166288801 166288856 -30906576 + BC1_Mm scRNA scRNA 15 70 -82 4 1853 1201 240 129 20 chr1 166289280 166289628 -30905804 + MTD LTR MaLR 18 403 -16 4 1853 903 332 62 0 chr1 166289721 166290046 -30905386 + MER2 DNA MER2_type 1 345 0 4 1853 21 0 0 0 chr1 166290410 166290431 -30905001 + AT_rich Low_complexity Low_complexity 1 21 0 4 1853 198 0 0 0 chr1 166290933 166290955 -30904477 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1853 21 0 0 0 chr1 166290983 166291004 -30904428 + AT_rich Low_complexity Low_complexity 1 21 0 4 1853 404 289 134 34 chr1 166291349 166291528 -30903904 + B3A SINE B2 1 197 -1 4 1853 395 320 48 37 chr1 166291549 166291737 -30903695 + MER58A DNA MER1_type 17 206 -18 4 1853 24 0 0 0 chr1 166291915 166291939 -30903493 + AT_rich Low_complexity Low_complexity 1 24 0 4 1853 255 308 96 37 chr1 166292497 166292632 -30902800 + MIRc SINE MIR 34 176 -92 4 1853 313 304 88 96 chr1 166292753 166292993 -30902439 - MLT1H2 LTR MaLR 0 489 252 4 1853 207 0 0 0 chr1 166293642 166293665 -30901767 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1853 728 237 59 115 chr1 166294598 166294841 -30900591 + B4A SINE B4 5 233 -59 4 1853 1086 201 16 21 chr1 166294841 166295034 -30900398 + B3 SINE B2 2 193 -23 4 1853 216 0 0 0 chr1 166295369 166295393 -30900039 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1853 2399 207 107 17 chr1 166295396 166295985 -30899447 - RMER1A Other Other -61 969 328 4 1853 2036 125 71 15 chr1 166296019 166296359 -30899073 - ORR1B2 LTR MaLR -8 359 1 4 1853 441 284 75 21 chr1 166296361 166296548 -30898884 + MLT1H2 LTR MaLR 47 243 -246 4 1853 22 56 0 0 chr1 166297191 166297227 -30898205 + AT_rich Low_complexity Low_complexity 1 36 0 4 1853 1280 61 0 0 chr1 166297392 166297540 -30897892 - B1_Mus1 SINE Alu 0 148 1 4 1853 216 293 10 20 chr1 166297629 166297730 -30897702 + T-rich Low_complexity Low_complexity 1 100 0 4 1853 236 290 0 14 chr1 166298340 166298410 -30897022 - MER5A DNA MER1_type -114 75 7 4 1853 21 36 0 0 chr1 166299690 166299718 -30895714 + AT_rich Low_complexity Low_complexity 1 28 0 4 1853 417 272 184 32 chr1 166300919 166301069 -30894363 - L1MD LINE L1 -1245 4901 4712 4 1853 356 293 43 43 chr1 166301069 166301208 -30894224 - B1F1 SINE Alu -10 139 1 4 1853 417 272 184 32 chr1 166301208 166301334 -30894098 - L1MD LINE L1 -1435 4711 4583 4 1853 554 263 79 18 chr1 166301532 166301760 -30893672 - L1MD LINE L1 -2148 3998 3757 4 1853 3033 195 58 7 chr1 166301805 166301844 -30893588 + Lx6 LINE L1 6834 6873 -587 4 1853 186 43 0 0 chr1 166301844 166301867 -30893565 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1853 3033 195 58 7 chr1 166301867 166302415 -30893017 + Lx6 LINE L1 6874 7451 -9 4 1853 1436 249 65 20 chr1 166302503 166302905 -30892527 - Lx8 LINE L1 -830 6643 6224 4 1853 295 331 89 7 chr1 166304734 166304880 -30890552 + Charlie1a DNA MER1_type 101 258 -1197 4 1853 462 261 124 31 chr1 166305139 166305364 -30890068 + RLTR15 LTR ERVK 45 290 -69 4 1853 1052 171 0 185 chr1 166305495 166305760 -30889672 - B3 SINE B2 0 216 1 4 1853 1303 282 194 9 chr1 166305779 166306523 -30888909 + Charlie1a DNA MER1_type 573 1453 -2 4 1853 510 46 0 0 chr1 166306786 166306851 -30888581 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1853 3163 64 29 7 chr1 166306854 166307266 -30888166 - BGLII LTR ERVK 0 421 1 4 1853 24 0 0 0 chr1 166307738 166307762 -30887670 + AT_rich Low_complexity Low_complexity 1 24 0 4 1853 276 53 0 0 chr1 166307819 166307857 -30887575 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1853 998 230 9 5 chr1 166307910 166308124 -30887308 + MTD LTR MaLR 1 215 -204 5 1853 658 196 48 61 chr1 166308123 166308270 -30887162 + B1_Mur1 SINE Alu 5 149 0 5 1853 405 136 0 0 chr1 166308273 166308339 -30887093 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 5 1853 884 203 72 31 chr1 166308346 166308525 -30886907 + MTD LTR MaLR 196 386 -33 5 1853 1678 203 25 83 chr1 166308525 166308922 -30886510 - ORR1D1 LTR MaLR 0 374 1 5 1853 884 203 72 31 chr1 166308922 166308935 -30886497 + MTD LTR MaLR 387 396 -23 5 1853 519 227 54 9 chr1 166309691 166309802 -30885630 + B1_Mus2 SINE Alu 2 117 -30 5 1853 22 0 0 0 chr1 166309869 166309891 -30885541 + AT_rich Low_complexity Low_complexity 1 22 0 5 1853 314 325 61 2 chr1 166310553 166310683 -30884749 + B1F1 SINE Alu 6 142 -7 5 1853 228 245 231 0 chr1 166310938 166311081 -30884351 + L1M3 LINE L1 5220 5395 -745 5 1853 354 216 14 0 chr1 166311081 166311155 -30884277 + B3A SINE B2 2 76 -122 5 1853 2565 84 15 36 chr1 166311629 166311963 -30883469 - ORR1A2 LTR MaLR 0 327 1 5 1853 384 263 10 29 chr1 166312962 166313064 -30882368 + PB1D9 SINE Alu 10 109 -11 5 1853 360 262 28 28 chr1 166313095 166313201 -30882231 - Lx8 LINE L1 -141 7332 7227 5 1853 309 276 23 0 chr1 166313249 166313336 -30882096 - Lx8 LINE L1 -1 7472 7384 5 1853 266 146 21 0 chr1 166313527 166313575 -30881857 - Lx8 LINE L1 -2 7471 7423 5 1853 180 0 0 0 chr1 166313635 166313655 -30881777 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 5 1853 352 298 115 17 chr1 166314869 166315010 -30880422 - Lx8 LINE L1 -1732 5912 5720 5 1853 396 88 0 0 chr1 166315010 166315067 -30880365 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1853 352 303 112 22 chr1 166315067 166315203 -30880229 - Lx8 LINE L1 -1883 5761 5610 5 1853 1466 93 10 5 chr1 166317134 166317328 -30878104 + B2_Mm2 SINE B2 1 195 0 5 1853 214 293 0 33 chr1 166317482 166317542 -30877890 + PB1 SINE Alu 54 111 -16 5 1853 363 292 225 21 chr1 166318752 166319126 -30876306 - L2a LINE L2 -19 3407 2958 5 1853 251 262 102 8 chr1 166319142 166319269 -30876163 - L2a LINE L2 -528 2891 2753 5 1853 190 263 177 10 chr1 166319330 166319426 -30876006 + MIRb SINE MIR 130 241 -27 5 1853 189 0 0 0 chr1 166319452 166319473 -30875959 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1853 1479 151 285 13 chr1 166319850 166320152 -30875280 - ORR1C2 LTR MaLR 0 384 1 5 1853 269 0 56 0 chr1 166320524 166320560 -30874872 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1853 330 264 68 23 chr1 166321253 166321385 -30874047 + B1_Mus2 SINE Alu 4 141 -6 5 1853 277 233 17 0 chr1 166322264 166322324 -30873108 + ID4 SINE ID 1 61 -22 5 1853 346 279 35 0 chr1 166323465 166323551 -30871881 + MER44D DNA MER2_type 9 97 -608 5 1853 243 276 218 7 chr1 166323560 166323702 -30871730 + MER44D DNA MER2_type 528 699 -6 5 1853 2228 39 0 4 chr1 166324186 166324442 -30870990 - L1Md_A LINE L1 0 6582 6328 5 1853 550 300 80 123 chr1 166324659 166324739 -30870693 + B4 SINE B4 2 82 -210 5 1853 948 49 187 0 chr1 166324739 166324862 -30870570 + B1_Mm SINE Alu 2 147 0 5 1853 550 300 80 123 chr1 166324862 166325081 -30870351 + B4 SINE B4 83 288 -4 5 1853 1006 124 14 0 chr1 166325187 166325332 -30870100 + B1_Mus2 SINE Alu 1 147 0 5 1853 681 324 28 25 chr1 166326184 166326583 -30868849 + L1_Rod LINE L1 5432 5831 -16 5 1853 419 82 0 14 chr1 166327300 166327374 -30868058 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 5 1853 468 0 0 0 chr1 166327379 166327431 -30868001 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1853 242 303 61 0 chr1 166327431 166327497 -30867935 - ID4 SINE ID -11 72 3 5 1853 264 279 0 71 chr1 166327501 166327586 -30867846 - B1F SINE Alu 0 149 71 5 1853 1071 207 66 0 chr1 166327599 166327797 -30867635 + B3 SINE B2 1 211 -5 5 1853 318 316 81 49 chr1 166328017 166328140 -30867292 + PB1 SINE Alu 1 127 0 5 1853 307 292 0 0 chr1 166328142 166328207 -30867225 + ID2 SINE ID 8 72 -11 5 1853 504 329 77 60 chr1 166328696 166328929 -30866503 + B4 SINE B4 42 278 -14 5 1853 210 385 24 19 chr1 166329460 166329669 -30865763 - L2 LINE L2 -809 2610 2401 5 1854 1227 75 0 6 chr1 166330544 166330706 -30864726 + B2_Mm2 SINE B2 2 162 -33 5 1854 360 0 0 0 chr1 166330706 166330746 -30864686 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1854 2314 155 10 38 chr1 166332038 166332433 -30862999 - ORR1C2 LTR MaLR 0 384 1 5 1854 478 206 176 0 chr1 166332436 166332538 -30862894 + RSINE1 SINE B4 3 122 -43 5 1854 576 150 0 0 chr1 166332542 166332669 -30862763 + (TC)n Simple_repeat Simple_repeat 2 128 0 5 1854 342 45 0 0 chr1 166332669 166332713 -30862719 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1854 785 179 7 43 chr1 166332750 166332890 -30862542 - B1_Mus1 SINE Alu -12 136 2 5 1854 28 48 0 0 chr1 166332902 166332944 -30862488 + AT_rich Low_complexity Low_complexity 1 42 0 5 1854 1415 307 55 17 chr1 166333564 166334041 -30861391 - Lx8 LINE L1 -152 7321 6827 5 1854 955 269 102 21 chr1 166334050 166334384 -30861048 + Lx8 LINE L1 6333 6693 -780 5 1854 626 335 33 41 chr1 166334868 166335139 -30860293 + B4A SINE B4 4 272 -20 5 1854 258 32 0 0 chr1 166335220 166335251 -30860181 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1854 387 0 0 0 chr1 166335979 166336022 -30859410 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1854 225 315 62 23 chr1 166337166 166337296 -30858136 + MER97c DNA MER1_type? 30 164 -926 5 1854 315 0 0 0 chr1 166338171 166338206 -30857226 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1854 219 326 22 34 chr1 166338501 166338590 -30856842 - MIRb SINE MIR -158 110 23 5 1854 23 0 0 0 chr1 166338613 166338636 -30856796 + AT_rich Low_complexity Low_complexity 1 23 0 5 1854 360 295 72 24 chr1 166339171 166339296 -30856136 + MIR SINE MIR 36 166 -96 5 1854 434 252 205 32 chr1 166339355 166339511 -30855921 + B3A SINE B2 1 183 -15 5 1854 21 0 0 0 chr1 166339745 166339766 -30855666 + AT_rich Low_complexity Low_complexity 1 21 0 5 1854 731 238 52 0 chr1 166340723 166340895 -30854537 - B3A SINE B2 -16 182 2 5 1854 387 0 0 0 chr1 166342255 166342298 -30853134 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1854 1240 41 0 0 chr1 166342298 166342443 -30852989 - B1_Mm SINE Alu -2 145 1 5 1854 647 249 109 40 chr1 166342449 166342650 -30852782 - B3 SINE B2 0 216 2 5 1854 450 0 0 0 chr1 166342686 166342736 -30852696 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 5 1854 858 172 39 44 chr1 166342820 166343002 -30852430 - B3A SINE B2 -17 181 1 5 1854 270 350 152 0 chr1 166343078 166343255 -30852177 - MIR SINE MIR -43 219 16 5 1854 306 0 0 0 chr1 166343429 166343463 -30851969 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5 1854 1018 204 5 39 chr1 166343464 166343668 -30851764 - B3 SINE B2 -16 200 4 5 1854 251 323 127 24 chr1 166343917 166344082 -30851350 + L2c LINE L2 3203 3384 -3 5 1854 1187 81 0 0 chr1 166344371 166344519 -30850913 + B1_Mus1 SINE Alu 1 148 0 5 1854 675 219 206 11 chr1 166345064 166345244 -30850188 + B3 SINE B2 2 216 0 5 1854 242 320 6 89 chr1 166346950 166347118 -30848314 - MIR3 SINE MIR -36 172 19 5 1854 248 179 0 0 chr1 166347989 166348028 -30847404 - LTR33B LTR ERVL -393 110 72 5 1854 226 279 45 34 chr1 166348028 166348076 -30847356 - MLT1J1 LTR MaLR -354 88 1 5 1854 199 255 0 60 chr1 166348082 166348132 -30847300 + L2b LINE L2 3319 3365 -10 5 1854 195 100 0 0 chr1 166348398 166348428 -30847004 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1854 554 213 86 29 chr1 166349077 166349217 -30846215 - B1_Mur2 SINE Alu 0 149 2 5 1854 189 94 0 0 chr1 166350482 166350514 -30844918 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1854 429 20 0 0 chr1 166350623 166350673 -30844759 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1854 450 0 0 0 chr1 166350673 166350722 -30844710 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1854 254 200 0 113 chr1 166351564 166351626 -30843806 - B1F SINE Alu 0 149 95 5 1854 254 286 200 0 chr1 166351890 166351995 -30843437 - MLT1B LTR MaLR -4 386 261 5 1854 1140 296 110 27 chr1 166352087 166353097 -30842335 - L1MA4 LINE L1 -179 6001 4848 5 1854 478 294 63 32 chr1 166353137 166353295 -30842137 - MLT1B LTR MaLR -206 184 22 5 1854 995 296 42 6 chr1 166353479 166353833 -30841599 - L1MA6 LINE L1 -502 5798 5432 5 1854 1150 268 86 73 chr1 166353833 166354141 -30841291 + L1MA6 LINE L1 5801 6129 -171 5 1854 571 246 21 7 chr1 166354141 166354284 -30841148 + B1_Mur1 SINE Alu 2 146 -3 5 1854 1150 268 86 73 chr1 166354284 166354466 -30840966 + L1MA6 LINE L1 6130 6297 -3 5 1854 250 281 82 126 chr1 166354628 166354787 -30840645 - MLT1F1 LTR MaLR -158 411 260 5 1854 2154 103 0 63 chr1 166355114 166355446 -30839986 - ORR1A2 LTR MaLR -8 319 9 5 1854 377 282 58 39 chr1 166355797 166355952 -30839480 + RSINE1 SINE B4 2 159 -6 5 1854 225 0 0 0 chr1 166356049 166356074 -30839358 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1854 1187 75 0 0 chr1 166356074 166356220 -30839212 - B1_Mus2 SINE Alu -1 146 1 5 1854 1122 302 34 50 chr1 166357986 166358366 -30837066 - MTE2b LTR MaLR -5 374 1 5 1854 242 285 138 83 chr1 166358870 166359088 -30836344 - MLT1J LTR MaLR -77 435 206 5 1854 236 295 16 0 chr1 166359760 166359821 -30835611 + ID4_ SINE ID 5 66 -17 5 1854 1823 193 43 48 chr1 166360354 166360566 -30834866 + MTD LTR MaLR 3 203 -216 5 1854 1664 42 0 0 chr1 166360566 166360759 -30834673 + B2_Mm1t SINE B2 1 193 0 5 1854 1823 193 43 48 chr1 166360759 166360965 -30834467 + MTD LTR MaLR 204 419 0 5 1854 210 37 0 0 chr1 166361912 166361939 -30833493 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1854 848 174 0 0 chr1 166361940 166362072 -30833360 - B1_Mus2 SINE Alu -15 132 1 5 1854 239 265 61 0 chr1 166361960 166362092 -30833340 - ORR1B1-int LTR MaLR -750 759 620 5 1854 642 60 0 0 chr1 166362092 166362175 -30833257 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1854 685 228 20 20 chr1 166362176 166362324 -30833108 - B1_Mur2 SINE Alu -1 148 1 6 1854 258 275 62 0 chr1 166362427 166362507 -30832925 - MER45A DNA Tip100 -27 151 67 6 1854 193 195 93 105 chr1 166362640 166362726 -30832706 - L2a LINE L2 -14 3412 3328 6 1854 268 254 0 0 chr1 166366083 166366138 -30829294 + B1_Mur2 SINE Alu 87 141 -8 6 1854 216 0 0 0 chr1 166366871 166366895 -30828537 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1854 23 33 0 0 chr1 166367815 166367845 -30827587 + AT_rich Low_complexity Low_complexity 1 30 0 6 1854 689 152 97 15 chr1 166370779 166370913 -30824519 + B1_Mur4 SINE Alu 6 150 0 6 1854 235 268 39 49 chr1 166371394 166371496 -30823936 + ID_B1 SINE B4 98 198 -26 6 1854 1227 151 32 14 chr1 166372053 166372274 -30823158 - URR1B DNA MER1_type 0 225 1 6 1854 3233 56 2 5 chr1 166372685 166373082 -30822350 + MTA_Mm LTR MaLR 1 396 0 6 1854 262 347 53 26 chr1 166373725 166373876 -30821556 - MIRb SINE MIR -106 162 8 6 1854 543 183 182 8 chr1 166374986 166375107 -30820325 + B1_Mur1 SINE Alu 7 148 -1 6 1854 445 277 13 39 chr1 166375128 166375282 -30820150 + RSINE1 SINE B4 3 152 -13 6 1854 198 0 0 0 chr1 166375353 166375375 -30820057 + (G)n Simple_repeat Simple_repeat 1 22 0 6 1854 1055 118 0 0 chr1 166375475 166375619 -30819813 - B1_Mur3 SINE Alu -5 144 1 6 1854 636 197 73 0 chr1 166377398 166377535 -30817897 + B1_Mur4 SINE Alu 2 148 -2 6 1854 663 25 0 0 chr1 166377536 166377617 -30817815 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 1854 353 253 0 65 chr1 166379195 166379288 -30816144 + B1F SINE Alu 17 103 -46 6 1854 432 0 0 0 chr1 166379436 166379484 -30815948 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1854 835 162 0 51 chr1 166381940 166382096 -30813336 + B1_Mur3 SINE Alu 2 149 0 6 1854 1462 63 21 0 chr1 166382213 166382403 -30813029 + B2_Mm2 SINE B2 2 195 0 6 1854 234 0 0 0 chr1 166384360 166384386 -30811046 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 6 1854 198 0 0 0 chr1 166384593 166384615 -30810817 + (G)n Simple_repeat Simple_repeat 1 22 0 6 1854 198 0 0 0 chr1 166385659 166385681 -30809751 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 1854 23 0 0 0 chr1 166385697 166385720 -30809712 + AT_rich Low_complexity Low_complexity 1 23 0 6 1854 221 278 0 0 chr1 166388169 166388223 -30807209 + G-rich Low_complexity Low_complexity 1 54 0 6 1854 21 0 0 0 chr1 166388603 166388624 -30806808 + GC_rich Low_complexity Low_complexity 1 21 0 6 1854 396 0 0 0 chr1 166389970 166390014 -30805418 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1854 241 193 86 17 chr1 166390118 166390176 -30805256 + B1F SINE Alu 2 63 -86 6 1854 217 281 78 0 chr1 166390122 166390186 -30805246 + ID_B1 SINE B4 86 154 -70 6 1854 776 125 8 0 chr1 166390324 166390452 -30804980 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 6 1854 295 298 145 7 chr1 166390888 166391040 -30804392 + MIRb SINE MIR 95 267 -1 6 1854 432 280 37 0 chr1 166392589 166392696 -30802736 + ID_B1 SINE B4 106 216 -8 6 1854 227 250 78 0 chr1 166393164 166393228 -30802204 + ID4 SINE ID 2 70 -13 6 1854 472 291 77 36 chr1 166393384 166393580 -30801852 + B3 SINE B2 1 204 -12 6 1854 925 82 17 28 chr1 166394118 166394294 -30801138 + (TTCTC)n Simple_repeat Simple_repeat 3 176 0 6 1854 337 86 35 0 chr1 166394294 166394352 -30801080 + (TCTCCC)n Simple_repeat Simple_repeat 2 61 0 6 1854 1800 157 14 0 chr1 166394356 166394649 -30800783 + RLTR27 LTR ERVK 1 297 -12 6 1854 489 110 11 21 chr1 166394690 166394783 -30800649 + (TCTCCC)n Simple_repeat Simple_repeat 5 96 0 6 1854 300 351 131 6 chr1 166394784 166394959 -30800473 - HAL1-3A_ME LINE L1 -662 2196 2000 6 1854 795 165 16 8 chr1 166394975 166395103 -30800329 - B1_Mur4 SINE Alu -18 132 4 6 1854 852 258 23 28 chr1 166395123 166395338 -30800094 - B3 SINE B2 -2 214 1 6 1854 329 43 21 0 chr1 166395346 166395393 -30800039 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 6 1854 542 279 0 14 chr1 166395393 166395531 -30799901 - B1_Mur1 SINE Alu -13 136 1 6 1854 277 296 191 48 chr1 166395770 166395958 -30799474 - MLT1M LTR MaLR -269 403 189 6 1854 330 182 0 0 chr1 166396553 166396619 -30798813 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1854 237 228 0 34 chr1 166396830 166396889 -30798543 + GA-rich Low_complexity Low_complexity 3 59 0 6 1854 881 333 91 33 chr1 166396900 166397350 -30798082 - MLT1J LTR MaLR -2 510 35 6 1854 381 131 0 0 chr1 166397455 166397516 -30797916 + (A)n Simple_repeat Simple_repeat 1 61 0 6 1854 204 306 90 69 chr1 166398229 166398373 -30797059 + L2c LINE L2 3239 3385 -2 6 1854 189 0 0 0 chr1 166398563 166398584 -30796848 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1854 227 297 66 26 chr1 166398590 166398666 -30796766 - ID4 SINE ID 0 83 5 6 1854 903 126 52 0 chr1 166398989 166399124 -30796308 + B1_Mus1 SINE Alu 1 142 -6 6 1854 1161 118 0 0 chr1 166399144 166399322 -30796110 + (GAA)n Simple_repeat Simple_repeat 1 178 0 6 1854 309 26 0 0 chr1 166399322 166399360 -30796072 + (CAG)n Simple_repeat Simple_repeat 1 38 0 6 1854 252 0 0 0 chr1 166399898 166399926 -30795506 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1854 239 0 32 0 chr1 166400048 166400079 -30795353 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 6 1854 228 35 0 0 chr1 166400088 166400117 -30795315 + (CATA)n Simple_repeat Simple_repeat 2 30 0 6 1854 712 235 0 29 chr1 166400142 166400282 -30795150 + RSINE1 SINE B4 2 137 -28 6 1854 192 77 0 0 chr1 166400402 166400428 -30795004 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1854 225 143 23 23 chr1 166400496 166400539 -30794893 - B4A SINE B4 -63 229 187 6 1854 647 254 111 0 chr1 166400869 166401058 -30794374 + MTD LTR MaLR 210 419 0 6 1854 279 216 36 108 chr1 166402014 166402097 -30793335 + MER5A DNA MER1_type 8 84 -105 6 1854 1030 116 7 0 chr1 166402810 166402957 -30792475 + B1_Mus1 SINE Alu 1 148 0 6 1854 27 62 0 0 chr1 166402958 166403006 -30792426 + AT_rich Low_complexity Low_complexity 1 48 0 6 1854 21 0 0 0 chr1 166403307 166403328 -30792104 + AT_rich Low_complexity Low_complexity 1 21 0 6 1854 478 240 152 90 chr1 166403377 166403588 -30791844 - RMER15 LTR ERVL -15 560 337 6 1854 417 324 21 0 chr1 166404163 166404308 -30791124 - MER45A DNA Tip100 -30 148 1 6 1854 432 0 0 0 chr1 166404395 166404443 -30790989 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1854 212 377 13 0 chr1 166404601 166404678 -30790754 - L2b LINE L2 0 3375 3298 6 1854 306 246 46 0 chr1 166405160 166405225 -30790207 - AmnSINE1 SINE SINE -1 574 507 6 1854 336 200 0 0 chr1 166405244 166405314 -30790118 + GA-rich Low_complexity Low_complexity 1 70 0 6 1854 201 121 0 0 chr1 166405325 166405358 -30790074 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1854 587 330 66 37 chr1 166407009 166407272 -30788160 + B4A SINE B4 6 285 -7 6 1854 260 320 10 39 chr1 166407318 166407332 -30788100 + MT2B LTR ERVL 151 161 -440 6 1854 359 278 76 33 chr1 166407332 166407484 -30787948 + PB1D10 SINE Alu 1 148 0 6 1854 5248 53 5 16 chr1 166407692 166408363 -30787069 - L1Md_F2 LINE L1 -2 6580 5918 6 1854 522 0 0 0 chr1 166408618 166408676 -30786756 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1854 712 214 0 8 chr1 166408677 166408804 -30786628 - B1_Mur2 SINE Alu -14 135 10 6 1854 24 0 0 0 chr1 166409546 166409570 -30785862 + AT_rich Low_complexity Low_complexity 1 24 0 6 1854 362 232 21 60 chr1 166409570 166409739 -30785693 - L1ME1 LINE L1 -178 5996 5834 6 1854 712 269 22 44 chr1 166410373 166410556 -30784876 + ID_B1 SINE B4 1 179 -45 6 1854 725 198 227 0 chr1 166410803 166410975 -30784457 + B3 SINE B2 6 216 0 6 1854 195 283 0 19 chr1 166411815 166411869 -30783563 + MIR SINE MIR 36 88 -174 6 1854 410 202 48 0 chr1 166412484 166412568 -30782864 + B3A SINE B2 70 157 -41 6 1854 387 0 0 0 chr1 166412574 166412617 -30782815 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1854 1165 68 0 0 chr1 166412703 166412849 -30782583 + B1_Mus1 SINE Alu 3 148 0 6 1854 291 38 57 0 chr1 166412849 166412902 -30782530 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 6 1854 254 368 36 12 chr1 166413761 166413929 -30781503 - MIR3 SINE MIR -7 201 30 6 1854 441 0 0 0 chr1 166414290 166414339 -30781093 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1854 605 273 24 36 chr1 166414353 166414520 -30780912 - ID_B1 SINE B4 -56 168 4 6 1854 863 284 65 11 chr1 166414710 166414970 -30780462 + B4A SINE B4 1 274 -18 6 1854 844 222 65 5 chr1 166415277 166415463 -30779969 - B3 SINE B2 -18 198 2 6 1854 380 380 30 47 chr1 166415685 166415986 -30779446 - L1ME4a LINE L1 -234 5890 5595 6 1854 2352 38 0 10 chr1 166416001 166416295 -30779137 - L1Md_F2 LINE L1 0 6582 6292 6 1854 270 0 0 0 chr1 166416295 166416325 -30779107 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1854 1198 49 0 0 chr1 166416332 166416474 -30778958 - B1_Mus1 SINE Alu -6 142 1 6 1854 1027 97 28 0 chr1 166417081 166417225 -30778207 - B1_Mus1 SINE Alu 0 148 1 6 1854 312 235 56 47 chr1 166417236 166417343 -30778089 - Lx8 LINE L1 -7 7466 7359 6 1854 737 51 10 0 chr1 166417343 166417441 -30777991 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 6 1854 1027 122 12 0 chr1 166417442 166417614 -30777818 + (TCCCC)n Simple_repeat Simple_repeat 5 178 0 7 1854 768 307 119 6 chr1 166417614 166418120 -30777312 - Lx8 LINE L1 -51 7422 6860 7 1854 471 276 68 7 chr1 166418307 166418453 -30776979 - Lx8 LINE L1 -594 6879 6725 7 1854 421 255 72 78 chr1 166418455 166418533 -30776899 + B3 SINE B2 65 149 -67 7 1854 423 0 0 0 chr1 166418533 166418580 -30776852 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1854 421 255 72 78 chr1 166418580 166418654 -30776778 + B3 SINE B2 150 216 0 7 1854 257 216 0 0 chr1 166418756 166418807 -30776625 - RSINE1 SINE B4 -111 54 4 7 1854 260 264 105 24 chr1 166418807 166418931 -30776501 - L1M5 LINE L1 -426 5738 5605 7 1854 346 333 10 10 chr1 166418957 166419054 -30776378 + B4A SINE B4 1 97 -195 7 1854 315 71 0 0 chr1 166419540 166419582 -30775850 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1854 244 294 21 105 chr1 166419613 166419708 -30775724 + B4A SINE B4 91 177 -115 7 1854 754 68 0 79 chr1 166419936 166420063 -30775369 + B1_Mm SINE Alu 31 147 0 7 1854 2648 71 3 0 chr1 166420512 166420838 -30774594 + ORR1A2 LTR MaLR 1 327 0 7 1854 246 324 0 0 chr1 166421032 166421106 -30774326 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1854 186 290 16 16 chr1 166421116 166421179 -30774253 + L4 LINE RTE 1963 2025 -4 7 1854 22 0 0 0 chr1 166421193 166421215 -30774217 + AT_rich Low_complexity Low_complexity 1 22 0 7 1854 243 79 0 0 chr1 166421447 166421485 -30773947 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7 1854 200 128 0 25 chr1 166421493 166421533 -30773899 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1854 724 65 19 0 chr1 166422538 166422645 -30772787 + (TTTCC)n Simple_repeat Simple_repeat 3 111 0 7 1854 652 182 102 36 chr1 166422645 166422772 -30772660 - B1_Mur1 SINE Alu -9 140 1 7 1854 197 307 21 54 chr1 166422988 166423081 -30772351 - MIRb SINE MIR -40 228 139 7 1854 330 257 37 107 chr1 166424413 166424600 -30770832 - LTR73 LTR ERV1 -227 345 172 7 1854 1564 138 148 46 chr1 166425424 166425796 -30769636 + RMER17C LTR ERVK 1 410 0 7 1854 1056 214 87 15 chr1 166425816 166426081 -30769351 - RLTR20A2 LTR ERVK -293 285 2 7 1854 385 339 38 0 chr1 166426196 166426379 -30769053 - L1MD1 LINE L1 -136 6106 5917 7 1854 784 224 74 40 chr1 166426385 166426761 -30768671 - L1MD1 LINE L1 -720 5522 5123 7 1854 495 256 22 81 chr1 166426797 166426933 -30768499 + B1F1 SINE Alu 7 134 -15 7 1854 225 295 13 0 chr1 166426965 166427043 -30768389 - L1MD1 LINE L1 -1298 4848 4770 7 1854 234 62 0 0 chr1 166427103 166427135 -30768297 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1854 940 128 0 0 chr1 166427135 166427268 -30768164 - B1_Mus1 SINE Alu -13 135 3 7 1854 379 247 39 32 chr1 166427275 166427336 -30768096 - L1MD1 LINE L1 -1709 4437 4375 7 1854 2874 81 47 104 chr1 166427336 166427847 -30767585 + RLTR45 LTR ERVK 1 482 0 7 1854 379 247 39 32 chr1 166427847 166427940 -30767492 - L1MD1 LINE L1 -1772 4374 4282 7 1854 264 325 32 40 chr1 166428035 166428160 -30767272 + MLT1-int LTR MaLR 1151 1274 -97 7 1854 252 0 0 0 chr1 166428442 166428470 -30766962 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1854 559 247 134 28 chr1 166428683 166428862 -30766570 - B3A SINE B2 0 198 1 7 1854 378 0 0 0 chr1 166428915 166428957 -30766475 + (TTA)n Simple_repeat Simple_repeat 3 44 0 7 1854 691 185 34 0 chr1 166428959 166429078 -30766354 - B1_Mm SINE Alu -17 130 8 7 1854 303 319 0 0 chr1 166429021 166429090 -30766342 - B4 SINE B4 -143 149 81 7 1854 802 238 15 20 chr1 166429111 166429308 -30766124 - B3A SINE B2 0 198 3 7 1854 300 53 0 0 chr1 166429337 166429375 -30766057 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 7 1854 2415 51 7 0 chr1 166429427 166429723 -30765709 + L1_Mus1 LINE L1 6270 6567 0 7 1854 1818 171 93 14 chr1 166429747 166430092 -30765340 - RMER13A LTR ERVK -487 373 2 7 1854 526 112 10 20 chr1 166430093 166430113 -30765319 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 7 1854 1085 128 0 6 chr1 166430113 166430294 -30765138 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1854 526 112 10 20 chr1 166430294 166430373 -30765059 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 7 1854 460 271 33 46 chr1 166430373 166430524 -30764908 - B1F1 SINE Alu 0 149 1 7 1854 216 0 0 0 chr1 166430863 166430887 -30764545 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1854 870 336 89 36 chr1 166431195 166431587 -30763845 - MLT1H1 LTR MaLR 0 555 143 7 1854 657 145 25 17 chr1 166431732 166431851 -30763581 - PB1D9 SINE Alu 0 120 1 7 1854 258 32 0 0 chr1 166431866 166431897 -30763535 + (CAA)n Simple_repeat Simple_repeat 3 33 0 7 1854 837 258 26 0 chr1 166431905 166432099 -30763333 - B3 SINE B2 -1 215 17 7 1854 232 210 161 0 chr1 166432085 166432147 -30763285 - B2_Mm2 SINE B2 -122 73 2 7 1854 209 288 17 0 chr1 166432150 166432209 -30763223 + CT-rich Low_complexity Low_complexity 2 61 0 7 1854 649 304 92 43 chr1 166433779 166434061 -30761371 - MLT1B LTR MaLR 0 390 95 7 1854 1932 197 48 25 chr1 166434061 166434457 -30760975 - Lx4B LINE L1 -12 7046 6642 7 1854 362 183 0 0 chr1 166434472 166434532 -30760900 - MLT1B LTR MaLR -274 116 57 7 1854 316 196 0 0 chr1 166434584 166434640 -30760792 + ID_B1 SINE B4 100 155 -69 7 1854 982 110 6 12 chr1 166434662 166434827 -30760605 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 7 1854 199 305 68 0 chr1 166436497 166436556 -30758876 - MIRm SINE MIR -21 255 193 7 1854 2503 308 74 45 chr1 166437382 166438515 -30756917 - Lx8 LINE L1 -706 6767 5602 7 1854 226 245 57 0 chr1 166438782 166438835 -30756597 + ORSL-2b DNA Tip100 9 64 -444 7 1854 942 229 118 8 chr1 166439425 166439663 -30755769 + B4 SINE B4 2 265 -27 7 1854 468 0 0 0 chr1 166439663 166439715 -30755717 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1854 566 365 109 32 chr1 166440137 166440578 -30754854 + MLT1L LTR MaLR 60 534 -76 7 1854 231 88 0 0 chr1 166440655 166440689 -30754743 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 1854 622 191 25 13 chr1 166440822 166441147 -30754285 + (TG)n Simple_repeat Simple_repeat 1 329 0 7 1854 607 163 21 27 chr1 166441186 166441320 -30754112 + RLTR20B3 LTR ERVK 402 528 -49 7 1854 740 11 11 0 chr1 166441328 166441417 -30754015 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 7 1854 281 295 35 35 chr1 166442080 166442196 -30753236 + L2a LINE L2 3311 3426 0 7 1854 336 329 114 13 chr1 166443068 166443283 -30752149 + MIRb SINE MIR 10 250 -18 7 1854 260 341 51 63 chr1 166443382 166443557 -30751875 + MLT1F1 LTR MaLR 397 569 0 7 1854 2029 96 3 60 chr1 166443691 166444024 -30751408 - ORR1A2 LTR MaLR -13 314 1 7 1854 421 270 51 17 chr1 166444602 166444719 -30750713 + B3A SINE B2 20 140 -58 7 1854 374 351 92 4 chr1 166445035 166445264 -30750168 - MIRb SINE MIR -11 257 9 7 1854 315 246 14 14 chr1 166446081 166446155 -30749277 - ID4_ SINE ID -8 75 2 7 1854 575 240 194 29 chr1 166446513 166446719 -30748713 - B4 SINE B4 0 292 53 7 1854 673 296 83 12 chr1 166447103 166447356 -30748076 + B4A SINE B4 2 272 -20 7 1854 1829 106 11 0 chr1 166447539 166447822 -30747610 + ORR1A2 LTR MaLR 1 286 -41 7 1854 1176 82 0 0 chr1 166447822 166447969 -30747463 + B1_Mus2 SINE Alu 1 147 0 7 1854 225 0 0 0 chr1 166447969 166447994 -30747438 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1854 289 176 20 0 chr1 166447995 166448046 -30747386 + ORR1A2 LTR MaLR 340 391 -3 7 1854 9798 149 29 15 chr1 166448060 166449826 -30745606 + ORR1A2-int LTR MaLR 1 1792 0 7 1854 2389 98 3 12 chr1 166449826 166450156 -30745276 + ORR1A2 LTR MaLR 1 327 0 7 1854 737 227 19 58 chr1 166450758 166450964 -30744468 - B3A SINE B2 0 198 1 7 1854 700 299 68 2 chr1 166451206 166451517 -30743915 + MLT1A0 LTR MaLR 24 358 -7 7 1854 278 301 69 14 chr1 166451550 166451695 -30743737 + MIRb SINE MIR 79 231 -37 7 1854 257 277 51 25 chr1 166452946 166453080 -30742352 + MIRc SINE MIR 94 231 -37 7 1854 204 40 0 0 chr1 166453372 166453397 -30742035 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1854 501 326 0 0 chr1 166453653 166453800 -30741632 - B1F1 SINE Alu 0 149 3 7 1854 198 0 0 0 chr1 166454028 166454050 -30741382 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1854 25 51 0 0 chr1 166454839 166454878 -30740554 + AT_rich Low_complexity Low_complexity 1 39 0 7 1854 1110 35 7 0 chr1 166454904 166455046 -30740386 - L1Md_A LINE L1 0 6582 6440 7 1854 977 279 45 45 chr1 166455051 166455475 -30739957 - L1MA7 LINE L1 -1 6290 5867 7 1854 197 222 148 0 chr1 166455892 166455946 -30739486 + L2c LINE L2 3276 3337 -50 7 1854 641 173 8 0 chr1 166456021 166456148 -30739284 + (TA)n Simple_repeat Simple_repeat 2 129 0 7 1854 24 0 0 0 chr1 166456210 166456234 -30739198 + AT_rich Low_complexity Low_complexity 1 24 0 7 1854 672 272 9 114 chr1 166456249 166456469 -30738963 - B4 SINE B4 -87 205 9 7 1854 189 0 0 0 chr1 166456489 166456510 -30738922 + (CAA)n Simple_repeat Simple_repeat 2 22 0 7 1854 1648 240 96 10 chr1 166456557 166457049 -30738383 + RMER5 LTR ERV1 1 534 0 7 1854 228 111 0 0 chr1 166457216 166457252 -30738180 + (TTG)n Simple_repeat Simple_repeat 1 36 0 7 1854 509 164 93 0 chr1 166457259 166457367 -30738065 - PB1D9 SINE Alu -3 117 1 7 1854 318 247 0 61 chr1 166457294 166457376 -30738056 - B4A SINE B4 -136 156 80 7 1854 402 235 33 57 chr1 166457402 166457524 -30737908 - B1F1 SINE Alu -9 140 22 7 1854 275 196 18 0 chr1 166458848 166458904 -30736528 - URR1B DNA MER1_type 0 225 169 7 1854 379 275 26 100 chr1 166459100 166459113 -30736319 + CYRA11_Mm Unknown Y-chromosome 185 267 -350 7 1854 996 176 50 5 chr1 166459113 166459313 -30736119 - URR1B DNA MER1_type -15 210 2 7 1854 379 275 26 100 chr1 166459313 166459330 -30736102 + CYRA11_Mm Unknown Y-chromosome 268 397 -220 7 1854 222 233 0 32 chr1 166459601 166459663 -30735769 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1854 323 290 59 88 chr1 166459733 166459903 -30735529 - B4 SINE B4 -127 165 1 7 1854 3324 61 2 38 chr1 166459924 166460370 -30735062 - L1_Mus2 LINE L1 0 6566 6137 7 1854 1232 209 149 17 chr1 166460395 166460750 -30734682 + MTD LTR MaLR 18 419 0 7 1854 448 306 72 7 chr1 166461125 166461196 -30734236 + ID SINE ID 2 76 -148 7 1854 465 19 0 0 chr1 166461196 166461250 -30734182 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1854 448 321 76 7 chr1 166461250 166461337 -30734095 + ID_B1 SINE B4 77 172 -120 7 1854 228 211 35 0 chr1 166461342 166461399 -30734033 + CT-rich Low_complexity Low_complexity 1 59 0 8 1855 1501 53 21 0 chr1 166461642 166461830 -30733602 + B2_Mm1t SINE B2 2 193 0 8 1855 267 315 0 21 chr1 166461947 166462041 -30733391 + PB1D10 SINE Alu 26 117 0 8 1855 397 268 78 16 chr1 166462057 166462186 -30733246 + RSINE1 SINE B4 1 137 -28 8 1855 500 328 159 42 chr1 166462241 166462719 -30732713 + MLT1G1-int LTR MaLR 719 1252 -237 8 1855 394 310 218 25 chr1 166462908 166463363 -30732069 + MLT1G1 LTR MaLR 9 543 -52 8 1855 2996 125 111 6 chr1 166463400 166463930 -30731502 - RLTR1D LTR ERV1 -16 589 4 8 1855 399 240 35 80 chr1 166464219 166464332 -30731100 + ID_B1 SINE B4 111 218 -6 8 1855 290 131 15 90 chr1 166464344 166464411 -30731021 + B3A SINE B2 3 64 -134 8 1855 1242 177 194 12 chr1 166464420 166464740 -30730692 - ORR1C1 LTR MaLR 0 378 1 8 1855 537 276 124 6 chr1 166464788 166465102 -30730330 + MLT1B LTR MaLR 28 378 -12 8 1855 278 327 24 12 chr1 166465346 166465516 -30729916 + GA-rich Low_complexity Low_complexity 2 173 0 8 1855 332 279 0 63 chr1 166465545 166465736 -30729696 + GA-rich Low_complexity Low_complexity 1 179 0 8 1855 291 270 5 68 chr1 166465785 166465976 -30729456 + GA-rich Low_complexity Low_complexity 1 179 0 8 1855 248 296 0 63 chr1 166466005 166466196 -30729236 + GA-rich Low_complexity Low_complexity 1 179 0 8 1855 327 274 0 63 chr1 166466225 166466416 -30729016 + GA-rich Low_complexity Low_complexity 1 179 0 8 1855 620 332 20 35 chr1 166467014 166467214 -30728218 - ID_B1 SINE B4 -26 198 2 8 1855 1398 72 0 3 chr1 166469584 166470389 -30725043 + (TCCA)n Simple_repeat Simple_repeat 1 802 0 8 1855 4703 72 5 0 chr1 166470436 166471386 -30724046 - L1_Mus3 LINE L1 -482 6156 5202 8 1855 3524 64 33 0 chr1 166471386 166471838 -30723594 + L1_Mus3 LINE L1 6165 6631 -7 8 1855 411 56 0 0 chr1 166472257 166472311 -30723121 + (GGA)n Simple_repeat Simple_repeat 1 54 0 8 1855 249 164 18 18 chr1 166473089 166473145 -30722287 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1855 469 224 0 22 chr1 166474063 166474246 -30721186 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1855 203 232 0 12 chr1 166474287 166474370 -30721062 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1855 455 188 8 0 chr1 166474416 166474533 -30720899 + (TG)n Simple_repeat Simple_repeat 2 119 0 8 1855 310 254 14 65 chr1 166474887 166475026 -30720406 + MamGypLTR2b LTR Gypsy 775 906 -16 8 1855 279 133 0 0 chr1 166475249 166475294 -30720138 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1855 623 250 35 0 chr1 166475325 166475469 -30719963 + B1F2 SINE Alu 1 149 0 8 1855 279 247 59 0 chr1 166475591 166475676 -30719756 - MLT1B LTR MaLR -296 94 5 8 1855 186 133 0 0 chr1 166476257 166476287 -30719145 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1855 369 0 0 0 chr1 166476397 166476438 -30718994 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1855 349 279 114 48 chr1 166477370 166477536 -30717896 + Lx8 LINE L1 6930 7106 -367 8 1855 503 298 0 22 chr1 166477735 166477920 -30717512 + L1MB7 LINE L1 5714 5894 -290 8 1855 244 268 64 92 chr1 166479026 166479199 -30716233 - L2c LINE L2 0 3387 3220 8 1855 236 233 14 0 chr1 166479381 166479454 -30715978 + (TA)n Simple_repeat Simple_repeat 1 74 0 8 1855 31 26 0 0 chr1 166479509 166479547 -30715885 + AT_rich Low_complexity Low_complexity 1 38 0 8 1855 34 24 0 0 chr1 166479610 166479651 -30715781 + AT_rich Low_complexity Low_complexity 1 41 0 8 1855 311 122 0 20 chr1 166479774 166479824 -30715608 - HAL1-3A_ME LINE L1 -835 2023 1975 8 1855 475 208 13 25 chr1 166479832 166479990 -30715442 + (TATATG)n Simple_repeat Simple_repeat 3 158 0 8 1855 491 221 18 6 chr1 166479990 166480154 -30715278 + (TG)n Simple_repeat Simple_repeat 2 167 0 8 1855 390 223 0 31 chr1 166480154 166480251 -30715181 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 8 1855 225 338 36 14 chr1 166482094 166482232 -30713200 + L2 LINE L2 2675 2815 -604 8 1855 308 307 0 0 chr1 166483428 166483511 -30711921 - ID4 SINE ID -62 90 8 8 1855 4812 156 42 11 chr1 166484351 166485192 -30710240 - Lx4B LINE L1 -36 7022 6180 8 1855 701 118 9 0 chr1 166485182 166485292 -30710140 + Lx4B LINE L1 6082 6192 -866 8 1855 1101 235 103 40 chr1 166485603 166485953 -30709479 + MTEa LTR MaLR 8 379 0 8 1855 2436 93 12 0 chr1 166486146 166486468 -30708964 + ORR1A2 LTR MaLR 2 327 0 8 1855 291 306 134 30 chr1 166486793 166486995 -30708437 - L3 LINE CR1 -29 4460 4238 8 1855 207 100 0 0 chr1 166487119 166487149 -30708283 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1855 657 0 0 0 chr1 166487149 166487221 -30708211 + (GA)n Simple_repeat Simple_repeat 1 73 0 8 1855 1375 273 84 15 chr1 166487401 166488034 -30707398 - L1M3 LINE L1 -762 5418 4726 8 1855 1426 296 126 31 chr1 166488041 166488875 -30706557 - L1MA5 LINE L1 -2 6298 5386 8 1855 382 250 97 0 chr1 166488846 166488970 -30706462 - L1M3 LINE L1 -1479 4661 4526 8 1855 249 180 0 0 chr1 166489357 166489407 -30706025 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 8 1855 399 56 0 0 chr1 166489407 166489461 -30705971 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1855 336 127 0 0 chr1 166489971 166490026 -30705406 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1855 558 143 7 36 chr1 166491310 166491448 -30703984 + CT-rich Low_complexity Low_complexity 3 136 0 8 1855 189 0 0 0 chr1 166491501 166491522 -30703910 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1855 243 0 0 0 chr1 166491580 166491607 -30703825 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1855 723 294 14 43 chr1 166491622 166491832 -30703600 - B4 SINE B4 -88 204 1 8 1855 216 136 22 22 chr1 166492363 166492408 -30703024 + GA-rich Low_complexity Low_complexity 2 46 0 8 1855 407 355 85 12 chr1 166492439 166492687 -30702745 - LTR79 LTR ERVL 0 527 262 8 1855 214 235 0 38 chr1 166492830 166492883 -30702549 + CT-rich Low_complexity Low_complexity 5 55 0 8 1855 735 180 0 14 chr1 166492887 166493028 -30702404 - B1_Mur2 SINE Alu -5 144 6 8 1855 234 0 0 0 chr1 166493029 166493055 -30702377 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1855 916 242 173 16 chr1 166493076 166493383 -30702049 + ORR1E LTR MaLR 1 355 -4 8 1855 235 297 67 42 chr1 166493395 166493560 -30701872 - MTEa LTR MaLR -3 376 208 8 1855 465 318 60 72 chr1 166493756 166494159 -30701273 - Charlie4a DNA MER1_type 0 508 111 8 1855 21 71 0 0 chr1 166494573 166494615 -30700817 + AT_rich Low_complexity Low_complexity 1 42 0 8 1855 464 106 12 0 chr1 166494637 166494722 -30700710 + (TG)n Simple_repeat Simple_repeat 1 86 0 8 1855 647 309 37 67 chr1 166494753 166495023 -30700409 - B4A SINE B4 -23 269 8 8 1855 182 353 0 0 chr1 166495491 166495542 -30699890 - L2b LINE L2 -29 3346 3296 8 1855 470 270 207 0 chr1 166495584 166495859 -30699573 + MER58B DNA MER1_type 1 332 -9 8 1855 217 139 28 0 chr1 166496011 166496047 -30699385 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 8 1855 340 239 86 11 chr1 166496828 166496933 -30698499 - L1MA4 LINE L1 -368 5932 5800 8 1855 285 301 0 0 chr1 166497142 166497215 -30698217 - ID4_ SINE ID -9 74 2 8 1855 245 275 0 111 chr1 166497221 166497311 -30698121 - ID_B1 SINE B4 0 224 145 8 1855 342 260 39 0 chr1 166497356 166497433 -30697999 + RSINE1 SINE B4 12 91 -74 8 1855 336 102 0 0 chr1 166497433 166497482 -30697950 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1855 372 43 0 0 chr1 166497482 166497527 -30697905 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1855 434 192 106 0 chr1 166497529 166497633 -30697799 + L1MA4A LINE L1 5824 5938 -365 8 1855 342 182 0 0 chr1 166498276 166498342 -30697090 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1855 678 288 0 24 chr1 166498345 166498509 -30696923 - RSINE1 SINE B4 0 165 6 8 1855 262 194 54 0 chr1 166499904 166499997 -30695435 + (CAAAC)n Simple_repeat Simple_repeat 2 99 0 8 1855 180 0 0 0 chr1 166502394 166502414 -30693018 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1855 288 234 12 61 chr1 166502882 166502964 -30692468 - MLT1D LTR MaLR -7 498 421 2 1855 535 100 45 26 chr1 166502966 166503120 -30692312 + (TG)n Simple_repeat Simple_repeat 1 157 0 3 1855 335 60 60 0 chr1 166503131 166503198 -30692234 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1855 334 347 173 44 chr1 166503219 166503445 -30691987 - B4 SINE B4 -20 272 18 4 1855 216 0 0 0 chr1 166504520 166504544 -30690888 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1855 216 0 0 0 chr1 166504544 166504567 -30690865 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1855 227 200 0 0 chr1 166505523 166505573 -30689859 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1855 315 0 0 0 chr1 166505580 166505615 -30689817 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1855 293 324 0 0 chr1 166506041 166506112 -30689320 - BC1_Mm scRNA scRNA -71 81 11 9 1855 25 0 0 0 chr1 166506169 166506194 -30689238 + AT_rich Low_complexity Low_complexity 1 25 0 1 1855 256 324 0 0 chr1 166506282 166506356 -30689076 + ID4 SINE ID 5 78 -5 1 1855 297 0 0 0 chr1 166506476 166506509 -30688923 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1855 219 69 0 0 chr1 166506627 166506656 -30688776 + (TTC)n Simple_repeat Simple_repeat 3 31 0 1 1855 906 284 48 25 chr1 166506811 166507209 -30688223 - L1_Rod LINE L1 -88 5759 5353 1 1855 261 83 0 0 chr1 166507725 166507761 -30687671 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 1 1855 342 0 0 0 chr1 166507884 166507922 -30687510 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1855 886 229 6 16 chr1 166509551 166509733 -30685699 + B3A SINE B2 3 182 -16 1 1855 48 53 0 0 chr1 166509745 166509821 -30685611 + AT_rich Low_complexity Low_complexity 1 76 0 1 1855 1130 59 0 0 chr1 166510270 166510405 -30685027 - B1_Mus1 SINE Alu -13 135 1 1 1855 255 61 0 0 chr1 166510407 166510440 -30684992 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1855 1787 187 33 129 chr1 166510513 166511023 -30684409 - RMER20B LTR ERVK 0 627 167 2 1855 1178 166 0 5 chr1 166511027 166511215 -30684217 - RMER20B LTR ERVK -433 194 8 2 1855 1046 231 180 3 chr1 166511397 166511719 -30683713 - MTE2a LTR MaLR 0 379 1 2 1855 3579 135 110 11 chr1 166511790 166512406 -30683026 - RLTR33 LTR ERVK -1 677 1 2 1855 1329 217 77 34 chr1 166512704 166513053 -30682379 + ORR1D2 LTR MaLR 3 366 -4 2 1855 358 227 105 20 chr1 166513335 166513488 -30681944 - L1MA9 LINE L1 -284 6028 5863 2 1855 472 89 25 0 chr1 166513729 166513808 -30681624 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1855 423 0 0 0 chr1 166513811 166513858 -30681574 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1855 662 335 122 49 chr1 166513914 166514251 -30681181 + L1MC4a LINE L1 5784 6179 -1703 2 1855 982 128 0 21 chr1 166514251 166514395 -30681037 + B1_Mus1 SINE Alu 1 141 -7 2 1855 536 29 14 0 chr1 166514395 166514465 -30680967 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 3 1855 207 0 0 0 chr1 166514467 166514490 -30680942 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1855 662 335 122 49 chr1 166514490 166514990 -30680442 + L1MC4a LINE L1 6180 6686 -1196 2 1855 986 213 22 5 chr1 166515034 166515218 -30680214 - B3 SINE B2 -25 191 5 3 1855 312 294 53 32 chr1 166515239 166515334 -30680098 + L1MC4a LINE L1 6732 6828 -957 2 1855 444 58 29 0 chr1 166515351 166515420 -30680012 - MusHAL1 LINE L1 -1776 936 866 3 1855 1358 99 13 0 chr1 166515423 166515656 -30679776 + Lx2 LINE L1 5975 6210 -787 3 1855 526 172 8 8 chr1 166515755 166515884 -30679548 + (TGGA)n Simple_repeat Simple_repeat 3 131 0 3 1855 206 206 0 14 chr1 166515926 166516000 -30679432 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1855 213 308 13 13 chr1 166516382 166516461 -30678971 + GA-rich Low_complexity Low_complexity 1 79 0 3 1855 676 271 108 44 chr1 166517193 166517444 -30677988 - B4A SINE B4 -23 269 3 3 1855 430 309 59 29 chr1 166517523 166517693 -30677739 + MER5A DNA MER1_type 14 188 -1 3 1855 475 327 79 13 chr1 166518086 166518238 -30677194 - MLT1J LTR MaLR -128 384 223 4 1855 480 241 136 50 chr1 166518250 166518390 -30677042 - ORR1E LTR MaLR -1 418 242 4 1855 421 271 58 109 chr1 166518875 166519169 -30676263 - RLTR12B LTR ERVK -231 297 19 4 1855 287 183 0 12 chr1 166519239 166519322 -30676110 + GA-rich Low_complexity Low_complexity 1 82 0 4 1855 779 242 27 27 chr1 166519322 166519505 -30675927 - ORR1E LTR MaLR -174 185 3 4 1855 350 381 197 24 chr1 166519565 166519960 -30675472 + LTR33A_ LTR ERVL 3 463 -57 4 1855 227 390 106 18 chr1 166521235 166521452 -30673980 - MIRb SINE MIR -8 260 25 4 1855 923 310 125 31 chr1 166521604 166522064 -30673368 + MLT1D LTR MaLR 1 505 0 4 1855 801 251 116 27 chr1 166522252 166522510 -30672922 - RMER15 LTR ERVL -14 561 281 4 1855 344 238 29 29 chr1 166522549 166522653 -30672779 - RMER15 LTR ERVL -444 131 28 4 1855 229 291 58 81 chr1 166522621 166522707 -30672725 - LTR41B LTR ERVL -119 639 556 4 1855 1481 85 9 4 chr1 166522884 166523109 -30672323 + Lx2 LINE L1 6443 6668 -329 4 1855 469 339 8 16 chr1 166523786 166523912 -30671520 + RSINE1 SINE B4 3 127 -38 5 1855 189 74 0 0 chr1 166525170 166525197 -30670235 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1855 585 236 10 175 chr1 166525339 166525539 -30669893 - B3A SINE B2 -1 197 27 5 1855 298 294 154 32 chr1 166525674 166525797 -30669635 + MIR3 SINE MIR 64 201 -7 5 1855 23 33 0 0 chr1 166527340 166527370 -30668062 + AT_rich Low_complexity Low_complexity 1 30 0 5 1855 5494 45 0 3 chr1 166527602 166528276 -30667156 + L1Md_F2 LINE L1 5911 6582 0 5 1855 1004 131 0 7 chr1 166529498 166530070 -30665362 + (TG)n Simple_repeat Simple_repeat 1 567 0 5 1855 1815 266 98 4 chr1 166530070 166530622 -30664810 - Lx8 LINE L1 -151 7322 6719 5 1855 257 391 0 0 chr1 166530675 166530767 -30664665 + MIRc SINE MIR 7 98 -170 5 1855 287 320 70 123 chr1 166530856 166531141 -30664291 - ORR1E LTR MaLR 0 359 90 5 1855 605 287 50 6 chr1 166531164 166531346 -30664086 + RMER30 DNA MER1_type 5 194 -8 6 1855 1631 96 25 0 chr1 166531435 166531674 -30663758 - L1_Mus4 LINE L1 -118 6518 6274 6 1855 247 307 97 52 chr1 166532275 166532409 -30663023 + MIR SINE MIR 6 145 -117 6 1855 1210 61 0 0 chr1 166532523 166532670 -30662762 + B1_Mus1 SINE Alu 2 148 0 6 1855 198 0 0 0 chr1 166532680 166532702 -30662730 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1855 198 197 109 47 chr1 166532968 166533032 -30662400 - MIR3 SINE MIR -127 81 14 6 1855 775 223 164 0 chr1 166533182 166533402 -30662030 + MTC LTR MaLR 166 421 0 6 1855 303 271 152 7 chr1 166533532 166533677 -30661755 - Kanga1 DNA Tc2 -9 1736 1571 6 1855 834 194 30 55 chr1 166533704 166533906 -30661526 - B3A SINE B2 0 198 2 6 1855 1911 321 56 32 chr1 166533933 166534970 -30660462 - Lx8 LINE L1 -3 7470 6409 6 1855 266 254 31 16 chr1 166535213 166535277 -30660155 - ID4 SINE ID -16 67 3 7 1855 320 291 0 19 chr1 166535286 166535391 -30660041 - ID_B1 SINE B4 -2 222 120 7 1855 306 316 0 10 chr1 166535465 166535564 -30659868 + G-rich Low_complexity Low_complexity 1 98 0 7 1855 322 252 181 57 chr1 166535640 166535850 -30659582 + Arthur1 DNA Tip100 3608 3843 -104 7 1855 680 325 126 14 chr1 166536027 166536383 -30659049 - Kanga1 DNA Tc2 -821 924 529 6 1855 471 315 54 6 chr1 166536755 166536921 -30658511 + MER58A DNA MER1_type 48 221 -3 7 1855 13426 51 1 7 chr1 166538420 166540245 -30655187 - L1_Mm LINE L1 -2400 3483 1670 7 1855 6193 46 21 4 chr1 166540245 166541014 -30654418 + L1Md_F2 LINE L1 5799 6580 -2 7 1855 211 167 37 0 chr1 166542450 166542504 -30652928 + (TTG)n Simple_repeat Simple_repeat 2 57 0 7 1855 443 195 38 60 chr1 166542509 166542688 -30652744 - RMER17B LTR ERVK -499 459 303 7 1855 26 64 0 0 chr1 166542967 166543014 -30652418 + AT_rich Low_complexity Low_complexity 1 47 0 7 1855 594 0 0 0 chr1 166543073 166543139 -30652293 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 1855 344 207 20 193 chr1 166544139 166544289 -30651143 + RMER15 LTR ERVL 1 124 -451 8 1855 589 386 35 20 chr1 166544324 166544578 -30650854 + RMER15 LTR ERVL 275 532 -43 8 1855 400 263 97 55 chr1 166545314 166545459 -30649973 + RMER30 DNA MER1_type 25 175 -27 8 1855 284 332 30 35 chr1 166545976 166546207 -30649225 - L1MEd LINE L1 -4671 1554 1325 8 1855 328 26 0 0 chr1 166546447 166546485 -30648947 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1855 675 169 23 11 chr1 166546485 166546659 -30648773 + (TA)n Simple_repeat Simple_repeat 2 177 0 8 1855 319 333 44 5 chr1 166546843 166547048 -30648384 - L1MEd LINE L1 -5341 778 566 8 1855 21 0 0 0 chr1 166547354 166547375 -30648057 + AT_rich Low_complexity Low_complexity 1 21 0 8 1855 192 40 0 0 chr1 166547458 166547483 -30647949 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1855 407 19 19 0 chr1 166547559 166547611 -30647821 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1855 251 353 93 65 chr1 166547865 166548080 -30647352 - MER102b DNA MER1_type -2 339 119 8 1855 646 269 56 39 chr1 166548140 166548318 -30647114 + B3 SINE B2 2 182 -34 9 1855 534 16 0 0 chr1 166548319 166548382 -30647050 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1855 3291 195 51 5 chr1 166548434 166549104 -30646328 - Lx6 LINE L1 -157 7539 6569 9 1855 35 0 0 0 chr1 166549407 166549442 -30645990 + AT_rich Low_complexity Low_complexity 1 35 0 9 1855 261 0 0 0 chr1 166550525 166550554 -30644878 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1855 2028 137 41 67 chr1 166551600 166551991 -30643441 + ORR1C2 LTR MaLR 1 381 -3 9 1855 28 0 0 0 chr1 166553047 166553075 -30642357 + AT_rich Low_complexity Low_complexity 1 28 0 9 1855 686 184 6 16 chr1 166553408 166553590 -30641842 + (TA)n Simple_repeat Simple_repeat 1 180 0 9 1855 214 226 0 36 chr1 166553592 166553647 -30641785 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 9 1855 291 168 19 12 chr1 166554441 166554509 -30640923 - MTD LTR MaLR -14 405 294 9 1855 494 283 55 7 chr1 166554503 166554649 -30640783 - MTD LTR MaLR -247 172 20 9 1855 5401 126 19 7 chr1 166555478 166556303 -30639129 + Lx4A LINE L1 6223 7057 -1 1 1855 186 71 0 0 chr1 166556303 166556331 -30639101 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1 1855 7077 56 19 24 chr1 166557152 166558043 -30637389 + L1Md_F2 LINE L1 5694 6580 -2 1 1855 295 169 10 10 chr1 166558228 166558324 -30637108 + CT-rich Low_complexity Low_complexity 2 97 0 1 1855 204 40 0 0 chr1 166558463 166558488 -30636944 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1855 243 0 0 0 chr1 166558546 166558573 -30636859 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1 1855 243 350 65 59 chr1 166558594 166558764 -30636668 - MIRb SINE MIR -75 193 23 1 1855 202 384 67 19 chr1 166561254 166561464 -30633968 + MIR SINE MIR 5 224 -38 1 1855 726 12 0 0 chr1 166561719 166561802 -30633630 + (GGA)n Simple_repeat Simple_repeat 2 84 0 1 1855 453 234 163 17 chr1 166563123 166563464 -30631968 + MTD LTR MaLR 2 419 0 1 1855 319 226 0 0 chr1 166563936 166563989 -30631443 + RSINE1 SINE B4 86 138 -27 1 1855 210 37 0 0 chr1 166563989 166564016 -30631416 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1855 326 232 29 0 chr1 166565087 166565156 -30630276 + tRNA-Ala-GCY_ tRNA tRNA 2 72 -3 1 1855 228 228 0 0 chr1 166565163 166565220 -30630212 + GA-rich Low_complexity Low_complexity 3 59 0 1 1855 249 349 58 49 chr1 166565877 166566082 -30629350 + MIR SINE MIR 56 262 0 1 1855 3218 191 75 17 chr1 166566473 166566654 -30628778 - Lx3C LINE L1 -4 6972 6769 1 1855 225 0 0 0 chr1 166566654 166566679 -30628753 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1855 3218 191 75 17 chr1 166566679 166567190 -30628242 - Lx3C LINE L1 -208 6768 6241 1 1855 21 0 0 0 chr1 166567262 166567283 -30628149 + AT_rich Low_complexity Low_complexity 1 21 0 1 1855 349 20 40 0 chr1 166567535 166567585 -30627847 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 1 1855 245 313 0 0 chr1 166567855 166567922 -30627510 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1855 190 287 123 68 chr1 166567970 166568116 -30627316 - MIRb SINE MIR -80 188 35 1 1855 238 308 146 0 chr1 166569550 166569680 -30625752 - MIRb SINE MIR -36 232 84 1 1855 958 193 141 5 chr1 166569775 166569973 -30625459 - URR1B DNA MER1_type 0 225 1 1 1855 687 228 0 0 chr1 166570306 166570464 -30624968 - Lx9 LINE L1 -8 7636 7479 1 1855 636 115 0 0 chr1 166570781 166570903 -30624529 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 1 1855 442 292 58 8 chr1 166570903 166571024 -30624408 - ID_B1 SINE B4 -10 214 88 1 1855 4446 161 143 9 chr1 166572074 166572831 -30622601 + RMER13A LTR ERVK 1 858 -2 1 1855 901 254 15 10 chr1 166573561 166573756 -30621676 + B3 SINE B2 6 201 -15 1 1855 639 125 0 0 chr1 166574237 166574341 -30621091 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1 1855 249 135 0 0 chr1 166575207 166575259 -30620173 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1855 253 312 12 59 chr1 166575977 166576062 -30619370 - L2c LINE L2 -243 3144 3064 1 1855 3470 58 2 2 chr1 166576433 166576833 -30618599 + MTB LTR MaLR 1 400 0 1 1855 6885 126 17 76 chr1 166576833 166577998 -30617434 + MTB-int LTR MaLR 1 1096 -2 1 1855 884 119 33 65 chr1 166578050 166578203 -30617229 - B1_Mur3 SINE Alu -1 148 1 1 1855 427 344 26 0 chr1 166578237 166578391 -30617041 + MIRb SINE MIR 45 202 -66 1 1855 314 194 0 14 chr1 166579457 166579530 -30615902 + CT-rich Low_complexity Low_complexity 2 73 0 1 1855 1069 222 14 5 chr1 166579543 166579756 -30615676 - B3 SINE B2 0 216 2 1 1855 1181 180 84 97 chr1 166579835 166580155 -30615277 - Lx6 LINE L1 -622 6838 6523 1 1855 6928 164 62 48 chr1 166580140 166582641 -30612791 - L1_Mur3 LINE L1 -2042 3844 1129 1 1855 1544 194 107 13 chr1 166582643 166582961 -30612471 + Lx6 LINE L1 7105 7452 -8 1 1855 1030 147 28 6 chr1 166582956 166583134 -30612298 - L1_Mur3 LINE L1 -6579 1149 968 1 1855 1746 183 166 9 chr1 166583899 166584430 -30611002 - L1_Mur3 LINE L1 -6775 953 298 1 1855 225 0 0 0 chr1 166584630 166584655 -30610777 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1855 1125 90 17 0 chr1 166584666 166584843 -30610589 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1855 230 270 68 29 chr1 166584897 166585000 -30610432 - L1MC4 LINE L1 -805 7237 7131 1 1855 238 291 22 86 chr1 166585208 166585244 -30610188 + L1MC5 LINE L1 6728 6757 -1204 1 1855 230 0 33 0 chr1 166585244 166585274 -30610158 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1855 1445 82 16 0 chr1 166585274 166585458 -30609974 - B2_Mm2 SINE B2 -8 187 1 1 1855 238 291 22 86 chr1 166585458 166585559 -30609873 + L1MC5 LINE L1 6758 6856 -1105 1 1855 1123 63 0 76 chr1 166586856 166586981 -30608451 - MTA_Mm LTR MaLR 0 396 285 1 1855 902 125 25 12 chr1 166586981 166587143 -30608289 - RLTR10 LTR ERVK 0 390 227 1 1855 237 122 0 39 chr1 166587148 166587199 -30608233 - RLTR10 LTR ERVK -83 307 259 1 1855 2219 35 3 111 chr1 166587205 166587557 -30607875 - RLTR10 LTR ERVK -76 314 1 1 1855 11222 102 50 51 chr1 166587559 166589504 -30605928 - RLTR10-int LTR ERVK -3 1984 41 1 1855 931 115 32 6 chr1 166589516 166589674 -30605758 - RLTR10 LTR ERVK -2 388 227 1 1855 237 122 0 39 chr1 166589679 166589730 -30605702 - RLTR10 LTR ERVK -83 307 259 1 1855 2219 35 3 111 chr1 166589736 166590088 -30605344 - RLTR10 LTR ERVK -76 314 1 1 1855 2238 54 0 0 chr1 166590088 166590365 -30605067 - MTA_Mm LTR MaLR -119 277 1 1 1855 350 324 53 105 chr1 166590395 166590661 -30604771 + L1M5 LINE L1 5521 5772 -352 1 1855 231 344 23 23 chr1 166590859 166590990 -30604442 - L1ME1 LINE L1 -2 6162 6032 1 1855 525 309 110 7 chr1 166591068 166591358 -30604074 - L1ME1 LINE L1 -216 5963 5644 1 1855 422 183 26 2 chr1 166591377 166591464 -30603968 + B3A SINE B2 1 88 -107 1 1855 21 0 0 0 chr1 166591508 166591529 -30603903 + AT_rich Low_complexity Low_complexity 1 21 0 1 1855 512 296 97 54 chr1 166591568 166592186 -30603246 - L1ME1 LINE L1 -577 5602 4958 1 231 425 318 100 66 chr1 166592188 166593094 -30602338 - L1ME1 LINE L1 -2127 4019 3083 1 1856 543 289 111 28 chr1 166593725 166593942 -30601490 + ORR1E LTR MaLR 3 237 -122 1 1856 889 241 40 51 chr1 166594734 166595010 -30600422 + B4A SINE B4 2 274 -18 1 1856 1973 116 16 3 chr1 166595684 166595988 -30599444 - RLTR11A LTR ERVK 0 528 221 1 1856 1628 259 54 54 chr1 166596056 166596353 -30599079 + RMER5 LTR ERV1 1 298 -236 1 1856 3681 37 0 128 chr1 166596353 166596853 -30598579 + RLTR10C LTR ERVK 1 436 0 1 1856 1628 259 54 54 chr1 166596853 166597089 -30598343 + RMER5 LTR ERV1 299 533 -1 1 1856 478 309 249 30 chr1 166597089 166597421 -30598011 - MLT1E1A LTR MaLR -44 636 200 1 1856 1362 179 4 4 chr1 166597421 166597646 -30597786 + URR1B DNA MER1_type 1 225 0 1 1856 475 309 249 30 chr1 166597646 166597808 -30597624 - MLT1E1A LTR MaLR -455 199 7 1 1856 196 149 0 41 chr1 166598291 166598340 -30597092 + CT-rich Low_complexity Low_complexity 4 50 0 1 1856 1017 60 27 0 chr1 166598345 166598494 -30596938 + (TTTC)n Simple_repeat Simple_repeat 4 156 0 1 1856 599 36 0 12 chr1 166598785 166598868 -30596564 + (TCC)n Simple_repeat Simple_repeat 3 84 0 1 1856 29 0 0 25 chr1 166599247 166599271 -30596161 + AT_rich Low_complexity Low_complexity 1 24 0 1 1856 680 301 43 5 chr1 166599271 166599455 -30595977 + B3A SINE B2 1 191 -7 1 1856 29 0 0 25 chr1 166599455 166599470 -30595962 + AT_rich Low_complexity Low_complexity 1 15 0 1 1856 1211 323 91 20 chr1 166599697 166600377 -30595055 + MER44C DNA MER2_type 13 728 -5 1 1856 1552 73 10 0 chr1 166602024 166602216 -30593216 - B2_Mm2 SINE B2 0 195 2 1 1856 286 303 35 35 chr1 166602300 166602413 -30593019 - B1F2 SINE Alu -36 113 1 1 1856 292 396 29 33 chr1 166602576 166602819 -30592613 - MLT1J2 LTR MaLR -6 442 201 1 1856 299 343 21 50 chr1 166603436 166603577 -30591855 + B1F SINE Alu 1 137 -12 1 1856 373 323 60 18 chr1 166604716 166604883 -30590549 - MLT1L LTR MaLR -276 334 161 1 1856 206 195 49 0 chr1 166605299 166605340 -30590092 + MIRb SINE MIR 11 53 -215 1 1856 1535 236 125 0 chr1 166605374 166605742 -30589690 + MTD LTR MaLR 1 414 -5 1 1856 296 261 468 58 chr1 166606068 166606288 -30589144 + MLT1A1 LTR MaLR 8 317 -91 1 1856 197 356 16 87 chr1 166606375 166606501 -30588931 + L2c LINE L2 3270 3386 -1 1 1856 1629 213 67 6 chr1 166606728 166607058 -30588374 - MTD LTR MaLR -14 405 56 1 1856 1831 224 48 24 chr1 166607061 166607519 -30587913 - RMER19C LTR ERVK 0 611 143 1 1856 189 0 0 0 chr1 166607598 166607619 -30587813 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1856 230 291 44 55 chr1 166609145 166609236 -30586196 - MTEa LTR MaLR -38 341 252 1 1856 238 302 68 72 chr1 166609504 166609961 -30585471 - L1MEg LINE L1 -3016 3130 2676 1 1856 375 285 143 40 chr1 166610175 166610650 -30584782 - L1MEg LINE L1 -3841 2305 1784 1 1856 293 345 65 27 chr1 166611093 166611247 -30584185 - MIR SINE MIR -95 167 16 1 1856 492 121 0 0 chr1 166613309 166613400 -30582032 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 1 1856 1047 253 33 73 chr1 166613400 166613695 -30581737 - B4 SINE B4 -8 284 2 1 1856 283 305 156 24 chr1 166614833 166615038 -30580394 + Charlie4 DNA MER1_type 46 277 -1684 1 1856 537 213 0 0 chr1 166615051 166615220 -30580212 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1856 32 26 0 0 chr1 166615277 166615316 -30580116 + AT_rich Low_complexity Low_complexity 1 39 0 1 1856 985 255 93 62 chr1 166615508 166615863 -30579569 + ORR1D2 LTR MaLR 5 370 0 1 1856 771 321 92 37 chr1 166616083 166616465 -30578967 - LTR33B LTR ERVL -43 460 58 1 1856 1314 219 111 58 chr1 166616486 166616845 -30578587 - MTD LTR MaLR 0 419 42 1 1856 830 268 10 30 chr1 166618291 166618491 -30576941 + ID_B1 SINE B4 9 204 -20 1 1856 1115 252 132 24 chr1 166618516 166618894 -30576538 + MTD LTR MaLR 1 419 0 1 1856 570 284 84 44 chr1 166619053 166619278 -30576154 - MER82 DNA MER2_type -419 234 1 1 1856 208 278 69 0 chr1 166619495 166619567 -30575865 - MIR SINE MIR -98 164 88 1 1856 1567 327 49 26 chr1 166620843 166621462 -30573970 + Lx9 LINE L1 6893 7512 -132 1 1856 450 0 0 0 chr1 166621462 166621512 -30573920 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1856 1567 327 49 26 chr1 166621512 166621608 -30573824 + Lx9 LINE L1 7513 7623 -21 1 1856 779 247 70 28 chr1 166621751 166622049 -30573383 + L1MB1 LINE L1 5608 5976 -198 1 1856 238 200 92 23 chr1 166622078 166622165 -30573267 + L1M6 LINE L1 2345 2437 -4059 1 1856 827 148 56 0 chr1 166622494 166622636 -30572796 + B2_Mm2 SINE B2 14 163 -32 1 1856 261 0 0 0 chr1 166622638 166622667 -30572765 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1856 21 0 0 0 chr1 166622671 166622692 -30572740 + AT_rich Low_complexity Low_complexity 1 21 0 2 1856 1180 290 84 51 chr1 166622829 166623341 -30572091 + MT2A LTR ERVL 3 531 -2 2 1856 35434 66 8 8 chr1 166623650 166629096 -30566336 + L1Md_F3 LINE L1 145 5586 -297 2 1856 8638 44 2 3 chr1 166629096 166630095 -30565337 + L1Md_F3 LINE L1 5587 6584 0 2 1856 918 86 23 0 chr1 166630095 166630223 -30565209 + ORR1A3 LTR MaLR 145 275 -51 2 1856 22 0 0 0 chr1 166630223 166630245 -30565187 + AT_rich Low_complexity Low_complexity 1 22 0 2 1856 311 289 29 0 chr1 166631169 166631273 -30564159 + MTC-int LTR MaLR 65 171 -1087 2 1856 751 330 42 8 chr1 166631245 166631480 -30563952 + MTC-int LTR MaLR 585 827 -431 2 1856 636 251 61 92 chr1 166631480 166631840 -30563592 + RLTR15 LTR ERVK 1 349 -10 2 1856 1106 218 157 29 chr1 166631846 166632229 -30563203 + MTC-int LTR MaLR 823 1254 -4 2 1856 1164 258 149 28 chr1 166632234 166632597 -30562835 + MTC LTR MaLR 1 407 -14 2 1856 233 227 45 15 chr1 166632699 166632766 -30562666 - MIRc SINE MIR -135 133 65 2 1856 387 0 0 0 chr1 166633584 166633627 -30561805 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1856 235 220 34 0 chr1 166633890 166633949 -30561483 + Helitron2Na_Mam RC Helitron? 264 324 0 2 1856 336 77 0 0 chr1 166634485 166634537 -30560895 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1856 216 329 35 24 chr1 166635021 166635117 -30560315 + L2a LINE L2 3273 3420 -6 2 1856 339 356 38 8 chr1 166635372 166635505 -30559927 - B1F SINE Alu -12 137 1 2 1856 412 260 0 74 chr1 166636085 166636193 -30559239 - MLT1A LTR MaLR -258 116 17 2 1856 930 274 38 66 chr1 166637467 166637787 -30557645 + MTEb LTR MaLR 69 379 0 2 1856 703 174 8 25 chr1 166637951 166638069 -30557363 + B1_Mur4 SINE Alu 10 125 -25 2 1856 501 17 0 0 chr1 166638072 166638130 -30557302 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1856 1154 50 8 30 chr1 166638130 166638498 -30556934 + (CA)n Simple_repeat Simple_repeat 1 359 0 2 1856 1332 36 0 41 chr1 166638686 166638707 -30556725 + L1Md_T LINE L1 5707 5721 -861 2 1856 2922 44 0 0 chr1 166638707 166639047 -30556385 - L1Md_A LINE L1 -1 6581 6242 2 1856 1346 13 0 0 chr1 166639047 166639197 -30556235 + L1Md_T LINE L1 5722 5871 -12 2 1856 478 316 20 73 chr1 166639427 166639577 -30555855 - B4A SINE B4 -124 168 27 2 1856 414 0 0 0 chr1 166639817 166639863 -30555569 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1856 180 382 26 13 chr1 166640221 166640298 -30555134 - L2b LINE L2 -6 3369 3292 2 1856 330 257 45 27 chr1 166640629 166640741 -30554691 + PB1D10 SINE Alu 1 114 -3 2 1856 180 135 0 0 chr1 166640744 166640781 -30554651 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1856 289 162 14 14 chr1 166640783 166640852 -30554580 + GA-rich Low_complexity Low_complexity 2 70 0 2 1856 209 106 62 21 chr1 166640877 166640925 -30554507 + CT-rich Low_complexity Low_complexity 4 53 0 2 1856 297 128 0 0 chr1 166640932 166640979 -30554453 + (TCC)n Simple_repeat Simple_repeat 3 49 0 2 1856 201 289 0 0 chr1 166641106 166641151 -30554281 - L3 LINE CR1 -2 4487 4443 2 1856 242 262 0 16 chr1 166641975 166642037 -30553395 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1856 595 222 11 11 chr1 166642037 166642215 -30553217 + (TATG)n Simple_repeat Simple_repeat 1 178 0 2 1856 596 289 179 20 chr1 166642219 166642470 -30552962 - B4 SINE B4 0 292 2 2 1856 727 259 10 10 chr1 166643221 166643416 -30552016 + Lx9 LINE L1 6808 7002 -642 2 1856 336 178 0 76 chr1 166643486 166643565 -30551867 + MT2B LTR ERVL 192 264 -337 2 1856 621 78 26 0 chr1 166643565 166643585 -30551847 + B1_Mus2 SINE Alu 56 141 -9 2 1856 387 56 0 0 chr1 166643585 166643639 -30551793 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 2 1856 229 132 0 0 chr1 166643728 166643766 -30551666 + Lx9 LINE L1 7012 7049 -595 2 1856 423 0 0 0 chr1 166644091 166644138 -30551294 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1856 359 238 113 9 chr1 166644895 166645001 -30550431 - PB1D10 SINE Alu 0 117 1 2 1856 254 314 50 68 chr1 166645219 166645438 -30549994 - ORR1E LTR MaLR -121 238 24 2 1856 466 204 92 0 chr1 166645597 166645695 -30549737 - Lx9 LINE L1 -840 6804 6698 2 1856 25 75 0 0 chr1 166645715 166645768 -30549664 + AT_rich Low_complexity Low_complexity 1 53 0 2 1856 309 350 79 45 chr1 166645834 166646277 -30549155 - HAL1 LINE L1 -591 1916 1459 2 1856 533 256 0 6 chr1 166646884 166647019 -30548413 - B1_Mur2 SINE Alu -1 146 16 2 1856 350 289 255 0 chr1 166647031 166647180 -30548252 - Lx8 LINE L1 -214 7259 7073 2 1856 2417 139 15 30 chr1 166647263 166647306 -30548126 - ORR1B1 LTR MaLR -7 387 356 2 1856 2136 99 33 3 chr1 166647306 166647609 -30547823 - L1_Mus4 LINE L1 -6 6630 6319 2 1856 2417 139 15 30 chr1 166647609 166647958 -30547474 - ORR1B1 LTR MaLR -39 355 1 2 1856 315 333 96 48 chr1 166648291 166648521 -30546911 - HAL1 LINE L1 -2220 287 47 2 1856 1176 89 0 0 chr1 166648672 166648818 -30546614 - B1_Mus2 SINE Alu -1 146 1 2 1856 251 315 98 23 chr1 166649020 166649153 -30546279 - B1F SINE Alu -5 144 2 2 1856 249 169 0 63 chr1 166650950 166651013 -30544419 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 2 1856 255 261 31 0 chr1 166651149 166651214 -30544218 - MER5B DNA MER1_type -110 68 2 2 1856 332 256 168 14 chr1 166651312 166651482 -30543950 - MIRc SINE MIR -46 222 27 2 1856 642 259 18 134 chr1 166652023 166652299 -30543133 + MLT1B LTR MaLR 131 374 -16 2 1856 510 272 155 26 chr1 166653594 166653723 -30541709 - Lx8 LINE L1 -3 7470 7326 2 1856 551 53 13 0 chr1 166653723 166653798 -30541634 + (TCC)n Simple_repeat Simple_repeat 1 76 0 2 1856 510 272 155 26 chr1 166653798 166653932 -30541500 - Lx8 LINE L1 -148 7325 7174 2 1856 42504 0 0 0 chr1 166653937 166660306 -30535126 - L1Md_A LINE L1 0 6582 214 2 1856 390 264 22 0 chr1 166660305 166660396 -30535036 - Lx8 LINE L1 -289 7184 7092 2 1856 504 48 0 0 chr1 166660560 166660623 -30534809 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 1856 299 164 0 16 chr1 166660911 166660973 -30534459 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1856 522 314 64 25 chr1 166660973 166661208 -30534224 + MER47B DNA MER2_type 1 244 -174 2 1856 1729 212 50 8 chr1 166661225 166661587 -30533845 + MTE2b LTR MaLR 1 377 -2 2 1856 337 276 10 30 chr1 166661588 166661689 -30533743 + MER47B DNA MER2_type 319 417 -1 2 1856 4064 51 15 0 chr1 166662439 166662907 -30532525 - MT2C_Mm LTR ERVL 0 475 1 2 1856 306 317 0 0 chr1 166663261 166663343 -30532089 - L2a LINE L2 -30 3396 3315 2 1856 497 288 29 52 chr1 166663344 166663516 -30531916 - MTEa LTR MaLR -209 170 3 2 1856 1430 218 29 88 chr1 166663523 166663900 -30531532 + ORR1E LTR MaLR 5 359 0 2 1856 699 290 15 35 chr1 166665334 166665534 -30529898 - B3A SINE B2 -2 196 1 2 1856 225 204 0 0 chr1 166666363 166666407 -30529025 + T-rich Low_complexity Low_complexity 1 44 0 2 1856 38830 29 0 0 chr1 166666726 166673176 -30522256 - L1Md_T LINE L1 0 6585 38 2 1856 217 271 0 0 chr1 166674834 166674882 -30520550 + MIR SINE MIR 183 230 -32 2 1856 627 60 0 0 chr1 166676375 166676459 -30518973 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 2 1856 919 137 24 0 chr1 166676461 166676629 -30518803 + CT-rich Low_complexity Low_complexity 3 174 0 2 1856 270 0 0 0 chr1 166676629 166676659 -30518773 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1856 606 39 0 0 chr1 166676775 166676852 -30518580 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1856 448 282 66 24 chr1 166677600 166677640 -30517792 + L1MEc LINE L1 2168 2208 -4192 2 1856 594 68 0 0 chr1 166677640 166677728 -30517704 + (CAAAC)n Simple_repeat Simple_repeat 2 89 0 2 1856 645 306 83 26 chr1 166677728 166678320 -30517112 + L1MEc LINE L1 2209 2840 -3479 2 1856 641 317 115 28 chr1 166678461 166679035 -30516397 + L1MEc LINE L1 3217 3840 -2479 2 1856 955 242 0 21 chr1 166679118 166679304 -30516128 - B3A SINE B2 -16 182 1 2 1856 255 244 34 23 chr1 166679352 166679440 -30515992 + L1MEc LINE L1 3942 4030 -2289 2 1856 859 140 0 13 chr1 166679641 166679800 -30515632 + GA-rich Low_complexity Low_complexity 1 157 0 2 1856 430 303 86 30 chr1 166679825 166680196 -30515236 + L1MEc LINE L1 4316 4707 -1612 2 1856 429 337 67 26 chr1 166680642 166680983 -30514449 + L1MD2 LINE L1 5445 5799 -443 2 1856 189 0 0 0 chr1 166680999 166681020 -30514412 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1856 861 269 127 22 chr1 166681029 166681649 -30513783 - L1MC1 LINE L1 -209 6124 5403 2 1856 332 361 70 16 chr1 166681653 166681832 -30513600 + L1MD2 LINE L1 5952 6140 -219 2 1856 923 187 0 7 chr1 166681832 166681983 -30513449 + B1_Mur4 SINE Alu 1 150 0 2 1856 304 85 35 35 chr1 166681989 166682074 -30513358 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 2 1856 265 208 130 46 chr1 166682085 166682216 -30513216 + L1MD3 LINE L1 7739 7994 -1 2 1856 434 322 110 27 chr1 166682212 166682585 -30512847 + L1MEc LINE L1 4722 5125 -1194 2 1856 441 54 0 0 chr1 166682640 166682696 -30512736 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1856 1052 287 50 56 chr1 166682858 166682939 -30512493 - Lx8 LINE L1 0 7473 7393 2 1856 1595 210 47 22 chr1 166682939 166683300 -30512132 + ORR1D1 LTR MaLR 1 370 -4 2 1856 1052 287 50 56 chr1 166683300 166683683 -30511749 - Lx8 LINE L1 -81 7392 7012 2 1856 249 333 0 0 chr1 166683695 166683770 -30511662 - Lx8 LINE L1 -527 6946 6872 2 1856 245 345 45 11 chr1 166683799 166683887 -30511545 + MIRc SINE MIR 31 121 -147 2 1856 4248 38 2 2 chr1 166684639 166685115 -30510317 - L1_Mus2 LINE L1 -1 6565 6090 2 1856 286 351 75 12 chr1 166685340 166685513 -30509919 + MIRc SINE MIR 81 264 -4 2 1856 890 78 8 0 chr1 166686393 166686521 -30508911 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 2 1856 456 335 24 77 chr1 166686569 166686632 -30508800 - B4A SINE B4 -6 286 142 2 1856 612 234 32 0 chr1 166686632 166686756 -30508676 - B1_Mur1 SINE Alu -2 147 20 2 1856 456 335 24 77 chr1 166686756 166686776 -30508656 - B4A SINE B4 -6 141 91 2 1856 21 0 0 0 chr1 166687061 166687082 -30508350 + AT_rich Low_complexity Low_complexity 1 21 0 2 1856 251 359 115 44 chr1 166687082 166687764 -30507668 - L2c LINE L2 -4 3371 2643 2 1856 455 171 63 54 chr1 166687770 166687881 -30507551 + L1MA5 LINE L1 6183 6294 -6 2 1856 186 71 0 0 chr1 166687897 166687925 -30507507 + (TAAG)n Simple_repeat Simple_repeat 4 31 0 2 1856 222 288 47 4 chr1 166689524 166689614 -30505818 + AluF_3 SINE Alu 146 200 -111 2 1856 748 287 90 71 chr1 166689640 166690019 -30505413 + Lx8 LINE L1 7051 7436 -37 2 1856 419 218 0 7 chr1 166690021 166690169 -30505263 + (CA)n Simple_repeat Simple_repeat 1 147 0 2 1856 1079 279 93 56 chr1 166691588 166692052 -30503380 - RMER5 LTR ERV1 -11 523 43 2 1856 252 197 15 0 chr1 166692364 166692430 -30503002 + T-rich Low_complexity Low_complexity 4 70 0 2 1856 23 0 0 0 chr1 166692776 166692799 -30502633 + AT_rich Low_complexity Low_complexity 1 23 0 3 1856 218 320 179 0 chr1 166693570 166693648 -30501784 - PB1D10 SINE Alu -14 103 12 3 1856 1246 287 127 55 chr1 166693657 166694746 -30500686 - L1MA5 LINE L1 -2 6298 5129 3 1856 234 250 16 0 chr1 166694809 166694873 -30500559 + GA-rich Low_complexity Low_complexity 2 66 0 3 1856 1104 190 65 0 chr1 166695852 166696052 -30499380 + B3 SINE B2 1 213 -3 3 1856 324 301 91 131 chr1 166696383 166696803 -30498629 - MLT1A1 LTR MaLR 0 408 6 3 1856 274 267 152 40 chr1 166696810 166696935 -30498497 - MER58B DNA MER1_type -13 328 190 3 1856 414 0 0 0 chr1 166697984 166698030 -30497402 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1856 300 230 40 0 chr1 166698227 166698301 -30497131 - U2 snRNA snRNA -100 88 12 3 1856 460 218 11 0 chr1 166698788 166698962 -30496470 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1856 759 183 0 0 chr1 166698992 166699172 -30496260 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1856 1212 114 166 0 chr1 166699550 166699743 -30495689 - URR1B DNA MER1_type 0 225 1 3 1856 283 348 92 11 chr1 166699873 166700135 -30495297 + L1M5 LINE L1 5313 5595 -599 3 1856 301 265 61 10 chr1 166702308 166702407 -30493025 - MLT1A1 LTR MaLR 0 365 262 3 1856 438 114 0 0 chr1 166702478 166702548 -30492884 + (GGGGA)n Simple_repeat Simple_repeat 3 72 0 3 1856 419 286 24 32 chr1 166702608 166702731 -30492701 - MLT1A1 LTR MaLR -259 149 28 3 1856 198 350 64 17 chr1 166703104 166703223 -30492209 - MIR SINE MIR -106 162 34 3 1856 276 298 93 66 chr1 166703850 166704033 -30491399 + MIRb SINE MIR 61 248 -20 3 1856 810 271 51 39 chr1 166705200 166705454 -30489978 - MT2A LTR ERVL 0 533 277 3 1856 2449 48 7 23 chr1 166705454 166705753 -30489679 + L1_Mus1 LINE L1 6268 6561 -6 3 1856 1752 130 17 24 chr1 166705772 166706063 -30489369 + Lx LINE L1 6274 6562 -92 3 1856 2307 168 34 0 chr1 166706272 166706653 -30488779 - ORR1B1 LTR MaLR 0 394 1 3 1856 213 312 82 38 chr1 166707798 166707913 -30487519 - MIR SINE MIR -19 249 117 3 1856 3173 34 34 0 chr1 166707913 166708266 -30487166 - RLTR10B2 LTR ERVK 0 365 1 3 1856 202 358 124 49 chr1 166708266 166708335 -30487097 - MIRb SINE MIR -152 116 51 3 1856 2834 67 111 0 chr1 166708740 166709100 -30486332 - MTB LTR MaLR 0 400 1 3 1856 229 296 90 35 chr1 166709267 166709424 -30486008 + MIRb SINE MIR 38 206 -62 3 1856 609 291 57 11 chr1 166710082 166710259 -30485173 - RMER30 DNA MER1_type -2 200 16 3 1856 196 125 50 0 chr1 166711505 166711545 -30483887 - L2a LINE L2 -1 3425 3384 3 1856 207 139 0 0 chr1 166711743 166711779 -30483653 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1856 405 261 0 0 chr1 166711796 166711976 -30483456 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1856 408 214 0 0 chr1 166712019 166712131 -30483301 + (CA)n Simple_repeat Simple_repeat 1 112 0 3 1856 286 284 10 83 chr1 166712509 166712605 -30482827 + PB1D10 SINE Alu 5 93 -24 3 1856 750 232 106 21 chr1 166713694 166713883 -30481549 - B3 SINE B2 -11 205 1 3 1856 21 0 0 0 chr1 166714008 166714029 -30481403 + AT_rich Low_complexity Low_complexity 1 21 0 3 1856 891 265 60 34 chr1 166715207 166715476 -30479956 + B4A SINE B4 2 277 -15 3 1856 207 182 0 0 chr1 166715512 166715545 -30479887 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1856 476 318 87 7 chr1 166715613 166715762 -30479670 + RSINE1 SINE B4 2 162 -3 3 1856 225 171 0 0 chr1 166715767 166715808 -30479624 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1856 272 307 14 86 chr1 166716116 166716255 -30479177 - L2b LINE L2 0 3375 3247 3 1856 305 318 64 77 chr1 166716453 166716688 -30478744 - L2a LINE L2 -17 3409 3178 3 1856 284 338 99 14 chr1 166717084 166717225 -30478207 + MIRb SINE MIR 83 235 -33 3 1856 775 153 31 13 chr1 166717333 166717492 -30477940 + ORR1D1 LTR MaLR 3 164 -210 3 1856 184 398 31 31 chr1 166718284 166718445 -30476987 - MER5A DNA MER1_type -5 184 24 3 1856 405 0 0 0 chr1 166718926 166718971 -30476461 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 1856 1602 97 22 4 chr1 166720081 166720309 -30475123 - L1_Mus4 LINE L1 -8 6630 6399 3 1856 1896 163 3 3 chr1 166720313 166720608 -30474824 + RLTR10E LTR ERVK 1 295 -16 3 1856 1215 188 5 0 chr1 166720617 166720819 -30474613 - RLTR10E LTR ERVK -107 204 2 3 1856 5981 99 2 7 chr1 166720819 166721945 -30473487 - L1_Mus4 LINE L1 -249 6387 5266 3 1856 1628 138 38 59 chr1 166721984 166722323 -30473109 - Lx9 LINE L1 0 7644 7313 3 1856 704 322 23 14 chr1 166722327 166722544 -30472888 + MER20 DNA MER1_type 1 219 0 3 1856 800 123 66 0 chr1 166722817 166722939 -30472493 - B3 SINE B2 -86 130 1 3 28 984 247 266 11 chr1 166723297 166723851 -30471581 + L1MB8 LINE L1 5484 6178 0 3 1857 289 322 38 32 chr1 166724032 166724218 -30471214 - MER34A LTR ERV1 -54 517 331 3 1857 385 327 18 12 chr1 166724584 166724751 -30470681 - MER5A DNA MER1_type -14 175 8 3 1857 249 33 0 0 chr1 166725156 166725186 -30470246 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1857 429 252 62 31 chr1 166725186 166725335 -30470097 + Lx7 LINE L1 7542 7695 -1 3 1857 311 321 123 71 chr1 166725550 166725973 -30469459 + L1ME1 LINE L1 5582 6026 -153 3 1857 269 294 21 11 chr1 166730624 166730717 -30464715 + L1MD3 LINE L1 7716 7809 -186 3 1857 184 307 27 0 chr1 166730946 166731021 -30464411 - MIR3 SINE MIR -27 181 105 3 1857 303 28 0 0 chr1 166731373 166731409 -30464023 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1857 363 227 0 0 chr1 166731734 166731831 -30463601 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1857 715 211 35 0 chr1 166731957 166732099 -30463333 + B1_Mur3 SINE Alu 2 148 -1 3 1857 267 271 34 93 chr1 166732115 166732233 -30463199 + MIR SINE MIR 78 188 -74 3 1857 213 241 0 0 chr1 166733907 166733961 -30461471 + C-rich Low_complexity Low_complexity 5 58 0 3 1857 200 35 35 0 chr1 166734079 166734108 -30461324 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1857 210 267 47 0 chr1 166736668 166736754 -30458678 + (TGAA)n Simple_repeat Simple_repeat 4 93 0 3 1857 5756 137 14 30 chr1 166736825 166737742 -30457690 - RMER19B LTR ERVK 0 902 1 3 1857 354 23 0 0 chr1 166740540 166740583 -30454849 + (CAGA)n Simple_repeat Simple_repeat 3 45 0 3 1857 626 315 38 48 chr1 166740914 166741207 -30454225 - B4 SINE B4 -2 290 1 3 1857 801 226 25 25 chr1 166742768 166742968 -30452464 - MTE2b LTR MaLR -14 365 166 3 1857 356 68 34 0 chr1 166742996 166743055 -30452377 + ORR1A4 LTR MaLR 1 61 -268 3 1857 501 80 0 0 chr1 166743225 166743300 -30452132 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1857 619 301 0 0 chr1 166743307 166743453 -30451979 - B3A SINE B2 -51 147 2 3 1857 357 292 30 30 chr1 166743457 166743591 -30451841 - B1F2 SINE Alu -3 146 13 3 1857 21 0 0 0 chr1 166745891 166745912 -30449520 + AT_rich Low_complexity Low_complexity 1 21 0 3 1857 2734 157 9 54 chr1 166745930 166746024 -30449408 - RLTR11A2 LTR ERVK 0 527 435 3 1857 2819 84 3 10 chr1 166746024 166746411 -30449021 + L1_Mus4 LINE L1 6253 6636 0 3 1857 2734 157 9 54 chr1 166746411 166746427 -30449005 - RLTR11A2 LTR ERVK -93 434 434 3 1857 189 0 0 0 chr1 166746427 166746448 -30448984 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1857 2734 157 9 54 chr1 166746448 166746888 -30448544 - RLTR11A2 LTR ERVK -93 434 1 3 1857 209 271 0 0 chr1 166747410 166747458 -30447974 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1857 1010 128 107 16 chr1 166748414 166748618 -30446814 - ORR1B1 LTR MaLR -200 194 1 3 1857 232 191 0 0 chr1 166748638 166748685 -30446747 - MTE2b LTR MaLR -326 53 7 3 1857 466 342 38 5 chr1 166749618 166749803 -30445629 - MLT1A1 LTR MaLR -2 406 216 3 1857 216 244 0 0 chr1 166749806 166749847 -30445585 - B1F SINE Alu -90 59 19 3 1857 898 176 148 0 chr1 166755607 166755789 -30439643 - URR1B DNA MER1_type 0 225 17 3 1857 205 392 62 0 chr1 166756206 166756336 -30439096 + MIRb SINE MIR 67 204 -64 3 1857 227 121 0 0 chr1 166756624 166756657 -30438775 + tRNA-Gly-GGA tRNA tRNA 7 39 -36 3 1857 517 253 25 31 chr1 166757183 166757342 -30438090 + Lx9 LINE L1 7340 7497 -147 3 1857 1238 96 176 13 chr1 166757945 166758178 -30437254 + MTC LTR MaLR 1 271 -150 3 1857 705 272 44 36 chr1 166758449 166758724 -30436708 + B4A SINE B4 2 278 -14 3 1857 212 122 0 24 chr1 166758737 166758779 -30436653 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 1857 287 198 10 30 chr1 166760169 166760268 -30435164 + (GTCTG)n Simple_repeat Simple_repeat 1 97 0 3 1857 495 0 0 0 chr1 166760325 166760380 -30435052 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1857 374 309 9 0 chr1 166761701 166761811 -30433621 + PB1D10 SINE Alu 1 111 -6 3 1857 510 31 0 0 chr1 166762264 166762328 -30433104 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1857 405 0 0 0 chr1 166763541 166763586 -30431846 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1857 25 0 0 0 chr1 166764697 166764722 -30430710 + AT_rich Low_complexity Low_complexity 1 25 0 3 1857 674 327 6 0 chr1 166764741 166764903 -30430529 - RSINE1 SINE B4 0 165 3 3 1857 876 97 14 14 chr1 166766811 166766958 -30428474 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3 1857 1973 110 5 153 chr1 166767225 166767611 -30427821 - ORR1A4 LTR MaLR 0 329 1 3 1857 10093 152 53 55 chr1 166767611 166769577 -30425855 - ORR1A4-int LTR MaLR 0 1963 1 3 1857 2089 97 6 0 chr1 166769577 166769888 -30425544 - ORR1A4 LTR MaLR 0 329 17 3 1857 456 263 70 38 chr1 166770952 166771138 -30424294 - L1M2 LINE L1 -1113 5030 4839 3 1857 337 255 13 113 chr1 166771140 166771299 -30424133 + L1M2 LINE L1 4313 4455 -1688 3 1857 650 248 4 57 chr1 166771340 166771443 -30423989 - L1M2 LINE L1 -1347 4796 4701 3 1857 189 0 0 0 chr1 166771443 166771464 -30423968 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 3 1857 2211 121 12 6 chr1 166771465 166771789 -30423643 + ORR1A3 LTR MaLR 1 326 0 3 1857 204 97 0 0 chr1 166771790 166771821 -30423611 + (TTGG)n Simple_repeat Simple_repeat 4 34 0 4 1857 650 248 4 57 chr1 166771821 166771940 -30423492 - L1M2 LINE L1 -1443 4700 4584 3 1857 290 314 21 21 chr1 166771997 166772140 -30423292 - L1M2 LINE L1 -1688 4455 4313 3 1857 207 69 0 0 chr1 166772152 166772181 -30423251 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1857 564 259 52 0 chr1 166772189 166772324 -30423108 - RSINE1 SINE B4 -21 144 3 4 1857 27 29 0 0 chr1 166772526 166772560 -30422872 + AT_rich Low_complexity Low_complexity 1 34 0 4 1857 342 115 0 0 chr1 166774684 166774736 -30420696 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1857 532 252 17 0 chr1 166774736 166774855 -30420577 - RSINE1 SINE B4 -44 121 1 4 1857 690 100 0 0 chr1 166775277 166775377 -30420055 + (TC)n Simple_repeat Simple_repeat 1 100 0 4 1857 333 348 210 0 chr1 166775380 166775685 -30419747 + MLT1F2 LTR MaLR 192 560 0 4 1857 1235 223 147 52 chr1 166775840 166776345 -30419087 + RMER4B LTR ERVK 19 571 -14 4 1857 1013 134 105 114 chr1 166776520 166776748 -30418684 + URR1A DNA MER1_type 1 226 0 4 1857 1892 101 68 84 chr1 166777529 166777896 -30417536 + ORR1B1 LTR MaLR 34 394 0 4 1857 724 317 56 112 chr1 166778053 166778121 -30417311 - MLT1A1-int LTR MaLR -1 1370 1300 4 1857 2127 164 99 3 chr1 166778121 166778505 -30416927 - MTC LTR MaLR 0 421 1 4 1857 1050 302 82 87 chr1 166778505 166779610 -30415822 - MLT1A1-int LTR MaLR -68 1421 291 4 1857 1092 302 45 16 chr1 166779680 166779696 -30415736 - Lx8 LINE L1 -5 7468 7453 4 1857 4145 62 0 8 chr1 166779696 166780220 -30415212 - L1Md_F2 LINE L1 0 6582 6063 4 1857 1092 302 45 16 chr1 166780220 166780583 -30414849 - Lx8 LINE L1 -21 7452 7078 4 1857 441 319 7 14 chr1 166780578 166780718 -30414714 - Lx8 LINE L1 -858 6615 6477 4 1857 346 301 0 41 chr1 166780725 166780822 -30414610 - MLT1A1-int LTR MaLR -1274 97 5 4 1857 427 286 162 34 chr1 166780848 166781083 -30414349 - MLT2C1 LTR ERVL -20 377 113 4 1857 650 188 142 59 chr1 166781152 166781356 -30414076 - ORR1D1 LTR MaLR 0 374 154 4 1857 8000 70 3 0 chr1 166781376 166782809 -30412623 - L1_Mus1 LINE L1 -1 6566 5129 4 1857 3754 67 33 2 chr1 166782812 166783294 -30412138 - L1Md_F2 LINE L1 -2 6580 6084 4 1857 4104 30 2 0 chr1 166783295 166783835 -30411597 + L1Md_F2 LINE L1 5519 6059 -523 4 1857 5104 106 1 0 chr1 166783831 166784547 -30410885 - L1_Mus1 LINE L1 -743 5140 4424 4 1857 375 373 81 32 chr1 166784623 166784969 -30410463 + MLT1I LTR MaLR 43 405 -6 4 1857 225 94 0 0 chr1 166785547 166785579 -30409853 + (CAT)n Simple_repeat Simple_repeat 3 34 0 4 1857 25 31 0 0 chr1 166786740 166786772 -30408660 + AT_rich Low_complexity Low_complexity 1 32 0 4 1857 189 0 0 0 chr1 166786992 166787013 -30408419 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1857 376 242 0 57 chr1 166787485 166787590 -30407842 - MLT1A1 LTR MaLR -4 404 306 4 1857 972 202 19 53 chr1 166788567 166788776 -30406656 - B3 SINE B2 -14 202 1 4 1857 410 316 157 4 chr1 166789003 166789232 -30406200 - L1MC LINE L1 -2256 5626 5363 4 1857 568 133 50 18 chr1 166791019 166791538 -30403894 + (CA)n Simple_repeat Simple_repeat 1 535 0 4 1857 24 0 0 0 chr1 166791559 166791583 -30403849 + AT_rich Low_complexity Low_complexity 1 24 0 4 1857 529 291 21 0 chr1 166791706 166791847 -30403585 + RSINE1 SINE B4 5 148 -17 4 1857 480 105 0 0 chr1 166792003 166792079 -30403353 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1857 425 260 6 2 chr1 166792104 166792210 -30403222 - B4A SINE B4 -116 108 1 4 1857 271 359 74 37 chr1 166792268 166792511 -30402921 - MLT1J1 LTR MaLR -56 388 137 4 1857 212 209 0 44 chr1 166792930 166792975 -30402457 + polypyrimidine Low_complexity Low_complexity 1 43 0 4 1857 859 324 64 42 chr1 166794334 166794833 -30400599 + MT2A LTR ERVL 2 511 -22 4 1857 833 129 21 0 chr1 166794878 166795018 -30400414 + URR1B DNA MER1_type 83 225 0 4 1857 389 235 75 50 chr1 166795018 166795031 -30400401 - CYRA11_Mm Unknown Y-chromosome -292 272 161 4 1857 231 325 13 13 chr1 166795076 166795154 -30400278 - ID4 SINE ID -4 79 2 4 1857 232 330 38 0 chr1 166795167 166795273 -30400159 - PB1D10 SINE Alu -7 110 1 4 1857 1200 285 51 9 chr1 166795292 166795625 -30399807 - ORR1E LTR MaLR -12 347 1 4 1857 1074 64 50 0 chr1 166795661 166795801 -30399631 + B1_Mus2 SINE Alu 1 147 0 4 1857 397 231 0 13 chr1 166796353 166796432 -30399000 - ID4 SINE ID -2 81 4 4 1857 1189 47 0 7 chr1 166796537 166796686 -30398746 + B1_Mus1 SINE Alu 1 148 0 4 1857 459 52 0 0 chr1 166796686 166796744 -30398688 + (GGAGA)n Simple_repeat Simple_repeat 3 60 0 4 1857 1368 67 0 0 chr1 166796744 166796924 -30398508 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1857 222 369 95 39 chr1 166798044 166798537 -30396895 + L2 LINE L2 2492 3012 -407 4 1857 3153 14 0 0 chr1 166798901 166799247 -30396185 - ORR1A0 LTR MaLR 0 346 1 4 1857 275 267 65 19 chr1 166799597 166799704 -30395728 + MIRc SINE MIR 32 143 -125 4 1857 282 227 53 13 chr1 166800423 166800499 -30394933 - LTR16A LTR ERVL -178 273 195 4 1857 319 299 37 53 chr1 166800951 166801138 -30394294 + ORR1E LTR MaLR 53 236 -123 4 1857 1107 95 0 26 chr1 166801582 166801734 -30393698 + B1_Mus1 SINE Alu 1 148 0 4 1857 438 94 0 0 chr1 166801748 166801812 -30393620 + (GGA)n Simple_repeat Simple_repeat 3 66 0 4 1857 958 169 17 6 chr1 166803597 166803775 -30391657 - ORR1D1 LTR MaLR -194 180 1 4 1857 198 281 31 0 chr1 166803800 166803864 -30391568 - L2a LINE L2 -18 3408 3343 4 1857 711 338 58 64 chr1 166804789 166805307 -30390125 + MLT2B3 LTR ERVL 1 515 -39 4 1857 321 346 18 48 chr1 166806049 166806216 -30389216 + B3A SINE B2 3 164 -34 4 1857 193 111 0 62 chr1 166806714 166806762 -30388670 + T-rich Low_complexity Low_complexity 5 49 0 4 1857 252 0 0 0 chr1 166807615 166807643 -30387789 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4 1857 399 254 73 0 chr1 166807653 166807763 -30387669 - B1F SINE Alu -9 140 23 4 1857 380 316 37 22 chr1 166807763 166807789 -30387643 - ID_B1 SINE B4 -9 215 78 4 1857 540 270 75 26 chr1 166807806 166808034 -30387398 + L1MA9 LINE L1 6068 6306 -6 4 1857 264 356 42 21 chr1 166808035 166808227 -30387205 - MLT1L LTR MaLR -59 551 356 4 1857 21 0 0 0 chr1 166808274 166808295 -30387137 + AT_rich Low_complexity Low_complexity 1 21 0 4 1857 512 111 11 0 chr1 166808438 166808528 -30386904 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 4 1857 1371 277 31 5 chr1 166808554 166808939 -30386493 - Lx7 LINE L1 -397 7299 6905 4 1857 578 14 14 0 chr1 166808991 166809062 -30386370 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1857 531 0 0 0 chr1 166809163 166809222 -30386210 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 4 1857 208 317 86 9 chr1 166810286 166810391 -30385041 + MIRc SINE MIR 132 244 -24 4 1857 1125 66 0 0 chr1 166811365 166811501 -30383931 + B1_Mus2 SINE Alu 1 136 -11 4 1857 1106 99 0 6 chr1 166811501 166811673 -30383759 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 4 1857 411 21 0 0 chr1 166812314 166812362 -30383070 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1857 396 0 0 0 chr1 166813051 166813095 -30382337 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1857 859 26 18 0 chr1 166815306 166815420 -30380012 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 1857 190 274 94 12 chr1 166815595 166815680 -30379752 + MIRb SINE MIR 117 208 -60 4 1857 705 264 80 58 chr1 166815682 166815907 -30379525 + B4A SINE B4 3 232 -60 4 1857 464 228 96 45 chr1 166815908 166816064 -30379368 + RSINE1 SINE B4 2 165 0 4 1857 23 0 0 0 chr1 166816075 166816098 -30379334 + AT_rich Low_complexity Low_complexity 1 23 0 4 1857 250 292 15 0 chr1 166816109 166816174 -30379258 + B4A SINE B4 227 292 0 4 1857 392 104 15 0 chr1 166816184 166816251 -30379181 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1857 354 226 0 0 chr1 166816757 166816863 -30378569 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1857 264 219 0 0 chr1 166817008 166817090 -30378342 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1857 389 143 317 30 chr1 166817143 166817244 -30378188 - B1_Mur2 SINE Alu -3 146 17 4 1857 254 256 22 55 chr1 166818107 166818198 -30377234 - MamSINE1 SINE tRNA -3 287 200 4 1857 502 269 0 0 chr1 166819821 166819925 -30375507 + PB1D10 SINE Alu 1 104 -13 4 1857 1218 320 174 16 chr1 166821059 166822286 -30373146 + L2 LINE L2 1472 2893 -526 4 1857 314 74 19 0 chr1 166822347 166822401 -30373031 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1857 346 311 156 7 chr1 166822469 166822757 -30372675 + L2 LINE L2 2561 2891 -528 4 1857 22 35 0 0 chr1 166823312 166823341 -30372091 + AT_rich Low_complexity Low_complexity 1 29 0 4 1857 218 326 56 21 chr1 166823743 166823887 -30371545 + L2 LINE L2 2736 2884 -535 4 1857 611 140 0 9 chr1 166824996 166825111 -30370321 + Lx3C LINE L1 6861 6974 -2 4 1857 22 0 0 0 chr1 166825166 166825188 -30370244 + AT_rich Low_complexity Low_complexity 1 22 0 4 1857 872 232 0 142 chr1 166825463 166825709 -30369723 - B3 SINE B2 -5 211 1 4 1857 21 0 0 0 chr1 166825709 166825730 -30369702 + AT_rich Low_complexity Low_complexity 1 21 0 4 1857 261 83 0 0 chr1 166825730 166825766 -30369666 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 4 1857 423 0 0 0 chr1 166825772 166825819 -30369613 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1857 384 119 0 0 chr1 166825819 166825877 -30369555 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1857 360 226 107 0 chr1 166825888 166825972 -30369460 - B3A SINE B2 -42 156 64 4 1857 195 80 0 74 chr1 166827715 166827769 -30367663 + C-rich Low_complexity Low_complexity 3 52 0 4 1857 408 180 133 48 chr1 166828126 166828231 -30367201 + B1_Mus2 SINE Alu 34 147 0 4 1857 315 0 0 0 chr1 166828353 166828388 -30367044 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1857 443 222 59 0 chr1 166828404 166828539 -30366893 + LTR37A LTR ERV1 284 426 0 4 1857 522 0 0 0 chr1 166828710 166828768 -30366664 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1857 195 100 0 0 chr1 166829332 166829362 -30366070 + (CCG)n Simple_repeat Simple_repeat 3 32 0 4 1857 253 57 94 0 chr1 166829613 166829666 -30365766 + A-rich Low_complexity Low_complexity 3 60 0 5 1857 531 240 66 0 chr1 166830212 166830333 -30365099 + RSINE1 SINE B4 11 139 -26 5 1857 360 0 0 0 chr1 166830333 166830373 -30365059 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1857 261 0 0 0 chr1 166830373 166830401 -30365031 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1857 290 232 171 0 chr1 166830553 166830635 -30364797 - MER81 DNA AcHobo -16 98 3 5 1857 183 242 86 21 chr1 166831095 166831188 -30364244 + MIRm SINE MIR 22 120 -156 5 1857 587 313 25 101 chr1 166831899 166832215 -30363217 + B4A SINE B4 1 292 0 5 1857 600 301 59 25 chr1 166832278 166832598 -30362834 - L1MB4 LINE L1 -4 6176 5846 5 1857 237 275 12 36 chr1 166832586 166832669 -30362763 - L1M5 LINE L1 -390 5774 5694 5 1857 523 248 39 2 chr1 166832669 166832825 -30362607 - L1MB4 LINE L1 -695 5638 5478 5 1857 1617 32 21 11 chr1 166834872 166835062 -30360370 + B2_Mm1a SINE B2 1 192 -1 5 1857 254 345 61 14 chr1 166835279 166835426 -30360006 + LTR88b LTR Gypsy? 480 633 -204 5 1857 858 294 129 47 chr1 166835953 166836503 -30358929 - Lx8 LINE L1 -35 7438 6844 5 1857 272 247 90 30 chr1 166836766 166836866 -30358566 + MIRc SINE MIR 110 215 -53 5 1857 181 244 0 47 chr1 166838302 166838345 -30357087 - L2 LINE L2 -1860 1559 1519 5 1857 459 0 0 0 chr1 166838374 166838425 -30357007 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1857 23 54 0 0 chr1 166839685 166839722 -30355710 + AT_rich Low_complexity Low_complexity 1 37 0 5 1857 811 298 48 4 chr1 166839733 166839962 -30355470 + Tigger7 DNA MER2_type 24 262 -2229 5 1857 284 247 35 58 chr1 166839978 166840064 -30355368 + Tigger7 DNA MER2_type 2405 2488 -3 5 1857 194 62 31 0 chr1 166840186 166840218 -30355214 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 5 1857 508 315 128 34 chr1 166840340 166840606 -30354826 + B4A SINE B4 2 292 0 5 1857 434 286 30 82 chr1 166841375 166841665 -30353767 + MTEa LTR MaLR 81 376 -3 5 1857 426 53 0 0 chr1 166842258 166842315 -30353117 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1857 839 286 129 8 chr1 166842508 166842896 -30352536 + L1MB8 LINE L1 5738 6172 -6 5 1857 227 321 88 9 chr1 166842910 166843023 -30352409 + L2a LINE L2 2635 2756 -663 5 1857 239 79 26 0 chr1 166843030 166843068 -30352364 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1857 387 0 0 0 chr1 166843068 166843110 -30352322 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1857 342 225 0 0 chr1 166843115 166843226 -30352206 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 1857 464 254 0 60 chr1 166843550 166843667 -30351765 - PB1D10 SINE Alu -7 110 1 5 1857 513 222 0 0 chr1 166843865 166844089 -30351343 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 1857 180 289 22 67 chr1 166844089 166844178 -30351254 + L2a LINE L2 3259 3343 -83 5 1857 190 214 0 23 chr1 166844228 166844271 -30351161 - MIR SINE MIR -64 144 103 5 1857 1228 82 0 0 chr1 166844292 166844439 -30350993 + B1_Mus2 SINE Alu 1 147 0 5 1857 180 0 0 0 chr1 166844439 166844459 -30350973 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1857 198 0 0 0 chr1 166845001 166845023 -30350409 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 5 1857 1491 205 130 17 chr1 166845023 166845399 -30350033 - Lx6 LINE L1 -61 7399 6654 5 1857 775 296 31 16 chr1 166845562 166845819 -30349613 - B4 SINE B4 0 292 32 5 1857 38086 27 2 7 chr1 166846645 166851885 -30343547 + L1Md_T LINE L1 381 5586 -297 5 1857 8901 33 3 0 chr1 166851885 166852878 -30342554 + L1Md_T LINE L1 5587 6582 0 5 1857 640 309 73 5 chr1 166853204 166853396 -30342036 + B3 SINE B2 2 206 -10 5 1857 362 265 67 85 chr1 166853452 166853617 -30341815 + RSINE1 SINE B4 3 164 -1 5 1858 230 29 0 56 chr1 166855061 166855097 -30340335 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1858 1282 61 0 0 chr1 166855098 166855245 -30340187 - B1_Mus2 SINE Alu 0 147 1 5 1858 2386 149 62 0 chr1 166855428 166855818 -30339614 + MTC LTR MaLR 1 414 -7 5 1858 510 61 0 0 chr1 166857244 166857310 -30338122 + (T)n Simple_repeat Simple_repeat 1 66 0 5 1858 2836 138 23 46 chr1 166857408 166857885 -30337547 - RMER4A LTR ERVK 0 466 1 5 1858 918 162 130 43 chr1 166858177 166858384 -30337048 - URR1B DNA MER1_type 0 225 1 5 1858 201 196 0 0 chr1 166858439 166858485 -30336947 + C-rich Low_complexity Low_complexity 3 48 0 5 1858 189 171 0 0 chr1 166858845 166858880 -30336552 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1858 540 262 130 5 chr1 166860654 166860846 -30334586 + B3 SINE B2 1 216 0 5 1858 236 270 95 38 chr1 166861610 166861768 -30333664 - RMER17C LTR ERVK -192 218 52 5 1858 1239 107 51 0 chr1 166862688 166862865 -30332567 + B2_Mm1t SINE B2 1 186 -7 5 1858 642 236 7 20 chr1 166863384 166863531 -30331901 + B1_Mur1 SINE Alu 4 148 -1 5 1858 184 352 46 62 chr1 166863602 166863732 -30331700 - L2c LINE L2 -7 3380 3253 5 1858 21 0 0 0 chr1 166865793 166865814 -30329618 + AT_rich Low_complexity Low_complexity 1 21 0 5 1858 450 271 13 67 chr1 166866329 166866479 -30328953 + B3A SINE B2 57 198 0 5 1858 21 0 0 0 chr1 166866945 166866966 -30328466 + AT_rich Low_complexity Low_complexity 1 21 0 5 1858 352 241 81 0 chr1 166867198 166867285 -30328147 + L1M2 LINE L1 5521 5614 -686 5 1858 763 174 76 0 chr1 166867287 166867419 -30328013 + B1_Mur4 SINE Alu 1 142 -8 5 1858 396 59 0 0 chr1 166867419 166867470 -30327962 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1858 773 296 201 29 chr1 166867476 166868098 -30327334 + L1MA8 LINE L1 5558 6286 -5 5 1858 369 0 0 0 chr1 166869373 166869414 -30326018 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1858 518 258 119 15 chr1 166869417 166869551 -30325881 - B3 SINE B2 -68 148 1 5 1858 289 258 51 99 chr1 166869790 166869991 -30325441 - MIRb SINE MIR -63 199 1 5 1858 1535 258 32 9 chr1 166870288 166870628 -30324804 + Lx6 LINE L1 6936 7283 -177 5 1858 434 294 25 12 chr1 166871862 166872024 -30323408 - HAL1-2a_MD LINE L1 -569 2455 2292 5 1858 393 321 76 53 chr1 166872382 166872553 -30322879 + MER58A DNA MER1_type 50 224 0 5 1858 432 296 85 30 chr1 166873267 166873431 -30322001 - B3 SINE B2 -38 178 6 5 1858 497 25 25 25 chr1 166875346 166875427 -30320005 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 5 1858 616 331 0 0 chr1 166875441 166875586 -30319846 - RSINE1 SINE B4 -20 145 1 5 1858 181 154 30 30 chr1 166875765 166875832 -30319600 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 5 1858 231 143 0 4 chr1 166876369 166876414 -30319018 + Lx3B LINE L1 6933 6976 0 5 1858 1484 93 0 10 chr1 166876735 166876931 -30318501 + B2_Mm2 SINE B2 2 195 0 5 1858 504 48 0 0 chr1 166876932 166876995 -30318437 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 5 1858 481 356 11 71 chr1 166877358 166877624 -30317808 + MIR SINE MIR 7 256 -6 5 1858 609 264 16 0 chr1 166877676 166877805 -30317627 - RSINE1 SINE B4 -24 141 11 5 1858 1319 282 30 16 chr1 166879153 166879524 -30315908 - MTE2b LTR MaLR -3 376 1 5 1858 390 322 9 0 chr1 166879862 166879977 -30315455 - PB1D10 SINE Alu 0 117 2 5 1858 252 32 0 0 chr1 166880059 166880090 -30315342 + U2 snRNA snRNA 4 34 -154 5 1858 407 201 107 59 chr1 166880092 166880261 -30315171 - Lx8 LINE L1 -13 7460 7284 5 1858 552 269 42 81 chr1 166880263 166880600 -30314832 - RLTR18 LTR ERVK -65 447 138 5 1858 611 329 21 67 chr1 166880567 166880896 -30314536 - RLTR18 LTR ERVK -302 314 1 5 1858 332 343 35 18 chr1 166880906 166881075 -30314357 - HAL1 LINE L1 -671 1836 1665 5 1858 23 0 0 0 chr1 166881183 166881206 -30314226 + AT_rich Low_complexity Low_complexity 1 23 0 5 1858 508 228 14 0 chr1 166881540 166881685 -30313747 + GA-rich Low_complexity Low_complexity 2 148 0 5 1858 24 0 0 0 chr1 166882349 166882373 -30313059 + AT_rich Low_complexity Low_complexity 1 24 0 5 1858 4856 45 2 42 chr1 166882373 166882976 -30312456 - L1_Mus2 LINE L1 0 6566 5988 5 1858 793 129 7 7 chr1 166883118 166883258 -30312174 + (GGA)n Simple_repeat Simple_repeat 2 141 0 5 1858 583 152 11 0 chr1 166883579 166883671 -30311761 + B3 SINE B2 24 116 -100 5 1858 22 35 0 0 chr1 166883727 166883756 -30311676 + AT_rich Low_complexity Low_complexity 1 29 0 5 1858 2626 229 96 47 chr1 166884382 166885217 -30310215 - Lx9 LINE L1 0 7644 6769 5 1858 193 342 43 35 chr1 166885517 166885632 -30309800 - L2b LINE L2 -20 3355 3240 5 1858 480 204 0 0 chr1 166885929 166886017 -30309415 + PB1D10 SINE Alu 30 117 0 5 1858 241 318 0 0 chr1 166886018 166886084 -30309348 + GA-rich Low_complexity Low_complexity 2 67 0 5 1858 3331 138 6 4 chr1 166887254 166887772 -30307660 + RLTR28 LTR ERVL 1 519 -5 5 1858 198 273 28 92 chr1 166887963 166888104 -30307328 - L2a LINE L2 -76 3350 3219 5 1858 500 228 49 127 chr1 166888177 166888395 -30307037 + B3 SINE B2 4 186 -30 5 1858 1122 329 63 56 chr1 166888725 166889748 -30305684 - L2a LINE L2 -584 2835 1805 5 1858 290 298 30 9 chr1 166890959 166891066 -30304366 - MIR SINE MIR -59 149 34 5 1858 263 211 40 0 chr1 166891207 166891283 -30304149 - Charlie16a DNA MER1_type -116 226 148 5 1858 522 0 0 0 chr1 166891734 166891792 -30303640 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1858 240 189 0 39 chr1 166891798 166891875 -30303557 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1858 1743 130 96 0 chr1 166894696 166894989 -30300443 + ORR1A4 LTR MaLR 1 321 -8 5 1858 361 252 27 64 chr1 166895288 166895398 -30300034 + B1F1 SINE Alu 6 111 -38 5 1858 244 281 62 0 chr1 166895459 166895523 -30299909 + ID4_ SINE ID 1 68 -15 5 1858 273 343 70 14 chr1 166895652 166895794 -30299638 - LTR85a LTR Gypsy? -552 150 1 5 1858 194 62 31 0 chr1 166896910 166896942 -30298490 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 6 1858 1234 41 0 7 chr1 166896944 166897091 -30298341 - B1_Mm SINE Alu 0 147 2 6 1858 345 19 0 0 chr1 166897099 166897152 -30298280 - L1_Mus4 LINE L1 0 6636 6584 6 1858 782 28 37 0 chr1 166897152 166897259 -30298173 + BC1_Mm scRNA scRNA 1 111 -41 6 1858 1570 126 19 11 chr1 166897259 166897523 -30297909 - L1_Mus3 LINE L1 -42 6596 6331 6 1858 1873 231 107 69 chr1 166897860 166898629 -30296803 + RMER1B Other Other 44 1049 -17 6 1858 498 96 0 0 chr1 166899289 166899362 -30296070 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1858 223 283 0 0 chr1 166899385 166899431 -30296001 - B1F SINE Alu -51 98 53 6 1858 183 286 44 67 chr1 166899929 166900019 -30295413 - L2a LINE L2 0 3426 3339 6 1858 263 333 85 28 chr1 166900250 166900426 -30295006 - L2a LINE L2 -388 3031 2846 6 1858 667 74 0 0 chr1 166900795 166900890 -30294542 - BC1_Mm scRNA scRNA -57 95 1 6 1858 402 21 0 0 chr1 166901295 166901342 -30294090 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1858 254 98 0 19 chr1 166901343 166901395 -30294037 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 6 1858 327 267 95 60 chr1 166901519 166901758 -30293674 + MTEb LTR MaLR 103 379 0 6 1858 2108 132 12 6 chr1 166902534 166902855 -30292577 + ORR1A2 LTR MaLR 5 327 0 6 1858 30 0 0 0 chr1 166903858 166903888 -30291544 + AT_rich Low_complexity Low_complexity 1 30 0 6 1858 235 67 43 22 chr1 166904617 166904663 -30290769 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1858 575 171 153 8 chr1 166905014 166905138 -30290294 - B1_Mur3 SINE Alu -1 148 7 6 1858 200 308 99 33 chr1 166905168 166905289 -30290143 - L2c LINE L2 -3 3384 3256 6 1858 180 111 0 0 chr1 166905733 166905760 -30289672 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 6 1858 1245 21 7 0 chr1 166906463 166906608 -30288824 - B1_Mus2 SINE Alu -1 146 1 6 1858 277 314 79 87 chr1 166907348 166907589 -30287843 + LTR85a LTR Gypsy? 370 608 -94 6 1858 423 309 14 48 chr1 166907629 166907775 -30287657 + B1F SINE Alu 6 146 -3 6 1858 333 267 0 0 chr1 166908063 166908138 -30287294 + MTEb LTR MaLR 1 75 -304 6 1858 2887 42 0 0 chr1 166908139 166908471 -30286961 - IAPEY3_LTR LTR ERVK 0 332 1 6 1858 58671 58 19 13 chr1 166908471 166916105 -30279327 - IAPEY3-int LTR ERVK 0 7680 1 6 1858 2897 30 0 15 chr1 166916105 166916442 -30278990 - IAPEY3_LTR LTR ERVK 0 332 1 6 1858 1214 286 3 3 chr1 166916442 166916751 -30278681 + MTEb LTR MaLR 71 379 0 6 1858 216 0 0 0 chr1 166917607 166917631 -30277801 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1858 237 352 49 35 chr1 166917655 166917799 -30277633 - MIR3 SINE MIR -26 182 37 6 1858 231 114 0 0 chr1 166919943 166919978 -30275454 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 6 1858 636 175 72 7 chr1 166920316 166920454 -30274978 - B1_Mur3 SINE Alu -2 147 1 6 1858 5264 58 19 0 chr1 166921140 166921807 -30273625 + L1_Mm LINE L1 4673 5352 -531 6 1858 321 111 0 0 chr1 166921807 166921852 -30273580 - B1_Mus2 SINE Alu -102 45 1 6 1858 346 197 26 0 chr1 166921910 166921986 -30273446 + B4A SINE B4 1 78 -214 6 1858 739 255 171 28 chr1 166921989 166922341 -30273091 + MTD LTR MaLR 1 405 -14 6 1858 392 263 308 6 chr1 166922377 166922536 -30272896 + B4A SINE B4 84 290 -2 6 1858 228 286 131 39 chr1 166923147 166923300 -30272132 + MIRb SINE MIR 14 180 -88 6 1858 3011 61 28 2 chr1 166923581 166923978 -30271454 + MTB_Mm LTR MaLR 1 407 0 6 1858 336 24 0 0 chr1 166924636 166924677 -30270755 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1858 306 215 22 0 chr1 166924796 166924931 -30270501 + CT-rich Low_complexity Low_complexity 2 139 0 6 1858 246 32 0 0 chr1 166924926 166924957 -30270475 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1858 317 217 0 21 chr1 166924958 166925052 -30270380 + CT-rich Low_complexity Low_complexity 3 94 0 6 1858 24 0 0 0 chr1 166925804 166925828 -30269604 + AT_rich Low_complexity Low_complexity 1 24 0 6 1858 3996 184 61 18 chr1 166926074 166926833 -30268599 - Lx7 LINE L1 -432 7264 6474 6 1858 398 195 37 0 chr1 166926879 166926961 -30268471 + Lx7 LINE L1 7257 7341 -355 6 1858 360 0 0 0 chr1 166926971 166927011 -30268421 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1858 665 162 35 6 chr1 166927011 166927185 -30268247 + C-rich Low_complexity Low_complexity 1 179 0 6 1858 1539 175 9 43 chr1 166927221 166927549 -30267883 + Lx7 LINE L1 7364 7680 -16 6 1858 22 56 0 0 chr1 166927674 166927710 -30267722 + AT_rich Low_complexity Low_complexity 1 36 0 6 1858 189 234 62 38 chr1 166927757 166927837 -30267595 - L2c LINE L2 -10 3377 3296 6 1858 459 327 39 39 chr1 166928499 166928642 -30266790 + RSINE1 SINE B4 2 146 -19 6 1858 255 61 0 0 chr1 166928642 166928675 -30266757 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1858 459 327 39 39 chr1 166928675 166928687 -30266745 + RSINE1 SINE B4 147 157 -8 6 1858 204 40 0 0 chr1 166928689 166928714 -30266718 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 1858 239 332 31 63 chr1 166929649 166929903 -30265529 - ORR1E LTR MaLR -113 246 1 6 1858 3413 25 8 0 chr1 166930685 166931078 -30264354 - MTA_Mm LTR MaLR 0 396 1 6 1858 249 57 0 0 chr1 166931123 166931158 -30264274 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1858 213 65 0 0 chr1 166931636 166931667 -30263765 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1858 6054 45 7 0 chr1 166932217 166932944 -30262488 + L1Md_F2 LINE L1 5851 6582 0 6 1858 692 271 69 0 chr1 166933035 166933223 -30262209 + B4 SINE B4 3 203 -89 6 1858 3020 157 48 35 chr1 166933752 166934320 -30261112 + RMER15 LTR ERVL 1 575 0 6 1858 557 297 7 6 chr1 166934582 166934737 -30260695 + ID_B1 SINE B4 71 218 -6 6 1858 204 40 0 0 chr1 166934740 166934765 -30260667 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 6 1858 650 179 6 0 chr1 166935052 166935225 -30260207 + (TG)n Simple_repeat Simple_repeat 2 175 0 6 1858 715 248 127 12 chr1 166936208 166936453 -30258979 - MER21B LTR ERV1 -298 565 293 6 1858 1170 272 42 31 chr1 166937938 166938298 -30257134 + MTEa LTR MaLR 5 368 -11 6 1858 207 0 0 0 chr1 166938301 166938324 -30257108 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1858 516 16 0 0 chr1 166938697 166938758 -30256674 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1858 379 313 20 20 chr1 166939386 166939536 -30255896 - MIR SINE MIR -16 246 97 6 1858 224 363 75 32 chr1 166940370 166940464 -30254968 - L2b LINE L2 -1 3374 3277 6 1858 724 96 17 0 chr1 166942316 166942431 -30253001 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 6 1858 216 0 0 0 chr1 166942619 166942643 -30252789 + (CAGGG)n Simple_repeat Simple_repeat 4 27 0 6 1858 405 0 0 0 chr1 166942879 166942924 -30252508 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1858 180 0 0 0 chr1 166943945 166943965 -30251467 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1858 465 66 0 0 chr1 166944278 166944339 -30251093 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 6 1858 1095 139 0 0 chr1 166944355 166944535 -30250897 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1858 22 0 0 0 chr1 166945517 166945539 -30249893 + AT_rich Low_complexity Low_complexity 1 22 0 6 1858 376 329 62 26 chr1 166945703 166946033 -30249399 - ORR1E LTR MaLR -2 377 6 6 1858 4628 94 34 19 chr1 166946227 166946910 -30248522 - Lx2 LINE L1 0 6997 6305 6 1858 846 143 14 0 chr1 166947720 166947860 -30247572 - B1_Mur4 SINE Alu 0 150 9 6 1858 342 253 64 138 chr1 166947726 166947914 -30247518 - B4A SINE B4 -71 221 48 6 1858 230 267 151 9 chr1 166948383 166948489 -30246943 - L2a LINE L2 -9 3417 3297 6 1858 257 311 28 28 chr1 166948554 166948660 -30246772 - L2 LINE L2 -3110 309 204 6 1858 978 272 102 70 chr1 166948911 166949400 -30246032 + RLTR16 LTR ERVK 1 505 0 6 1858 1157 266 87 31 chr1 166949687 166950044 -30245388 + MTEa LTR MaLR 3 379 0 6 1858 532 331 111 14 chr1 166950077 166950356 -30245076 - MER2 DNA MER2_type -15 330 25 6 1858 1188 256 12 26 chr1 166950418 166950759 -30244673 + L1_Rod LINE L1 5461 5796 -51 6 1858 484 272 8 23 chr1 166950925 166951053 -30244379 - RSINE1 SINE B4 -38 127 2 6 1858 341 293 76 99 chr1 166951054 166951357 -30244075 - ORR1E LTR MaLR -57 302 7 6 1858 245 344 148 38 chr1 166951800 166952139 -30243293 + Tigger16a DNA Tigger 547 922 -11 6 1858 243 0 0 0 chr1 166953123 166953150 -30242282 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1858 189 345 121 7 chr1 166953251 166953391 -30242041 - MIRb SINE MIR -62 206 51 6 1858 804 298 10 49 chr1 166953483 166953790 -30241642 + MLT1D LTR MaLR 120 414 -91 6 1858 207 0 0 0 chr1 166953829 166953852 -30241580 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6 1858 3959 124 20 8 chr1 166953852 166954445 -30240987 - Lx4A LINE L1 -4 7054 6455 6 1858 267 31 0 0 chr1 166954445 166954477 -30240955 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1858 900 176 0 0 chr1 166954477 166954647 -30240785 + (TA)n Simple_repeat Simple_repeat 1 170 0 6 1858 21 0 0 0 chr1 166954729 166954750 -30240682 + AT_rich Low_complexity Low_complexity 1 21 0 6 1858 249 139 0 0 chr1 166954781 166954824 -30240608 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1858 38801 17 2 8 chr1 166956065 166961460 -30233972 + L1Md_A LINE L1 223 5586 -297 6 1858 9056 11 0 0 chr1 166961460 166962456 -30232976 + L1Md_A LINE L1 5587 6582 0 6 1858 205 257 86 0 chr1 166962913 166962983 -30232449 + MIR SINE MIR 2 77 -185 6 1858 307 225 326 0 chr1 166963770 166963859 -30231573 + RSINE1 SINE B4 2 119 -46 6 1858 453 19 0 0 chr1 166964097 166964151 -30231281 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1858 252 122 0 0 chr1 166964151 166964192 -30231240 + (CACCAT)n Simple_repeat Simple_repeat 1 41 0 6 1858 1284 89 0 0 chr1 166964192 166964372 -30231060 + (CCA)n Simple_repeat Simple_repeat 1 180 0 6 1858 312 27 0 0 chr1 166964779 166964816 -30230616 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1858 700 141 6 22 chr1 166965200 166965382 -30230050 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1858 813 316 13 34 chr1 166965389 166965687 -30229745 - B4A SINE B4 0 292 1 7 1858 504 0 0 0 chr1 166966090 166966146 -30229286 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 7 1858 3285 48 5 2 chr1 166967934 166968329 -30227103 + MTA_Mm LTR MaLR 1 396 0 7 1858 2973 45 63 18 chr1 166970377 166970760 -30224672 + MTB LTR MaLR 1 400 0 7 1858 368 255 0 29 chr1 166971257 166971362 -30224070 + MLT1A1 LTR MaLR 307 408 0 7 1858 21 0 0 0 chr1 166971433 166971454 -30223978 + AT_rich Low_complexity Low_complexity 1 21 0 7 1858 580 248 92 13 chr1 166971794 166972023 -30223409 - MER33 DNA MER1_type -7 317 71 7 1858 358 259 60 77 chr1 166972690 166972807 -30222625 + PB1D10 SINE Alu 3 117 -32 7 1858 399 322 0 0 chr1 166973265 166973380 -30222052 + PB1D10 SINE Alu 1 115 -2 7 1858 221 320 30 20 chr1 166973805 166973904 -30221528 + L2a LINE L2 3325 3424 -2 7 1858 386 236 13 26 chr1 166973988 166974089 -30221343 + PB1D10 SINE Alu 24 115 -32 7 1858 793 133 20 13 chr1 166974143 166974295 -30221137 + CT-rich Low_complexity Low_complexity 4 156 0 7 1858 942 58 0 0 chr1 166974672 166974793 -30220639 + (TCTCCC)n Simple_repeat Simple_repeat 3 123 0 7 1858 382 315 58 37 chr1 166974862 166975050 -30220382 + ORR1E LTR MaLR 1 192 -167 7 1858 329 297 53 104 chr1 166975487 166975766 -30219666 + L1MA4A LINE L1 5773 6035 -265 7 1858 189 0 0 0 chr1 166976098 166976119 -30219313 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1858 195 271 152 0 chr1 166976545 166976604 -30218828 - MIRc SINE MIR -119 149 82 7 1858 341 314 0 19 chr1 166976644 166976748 -30218684 + GA-rich Low_complexity Low_complexity 2 103 0 7 1858 225 0 0 0 chr1 166977559 166977584 -30217848 + (TGG)n Simple_repeat Simple_repeat 1 25 0 7 1858 751 212 14 0 chr1 166977589 166977735 -30217697 - B1F SINE Alu -1 148 1 7 1858 447 19 0 0 chr1 166978085 166978137 -30217295 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1858 216 111 0 0 chr1 166980127 166980163 -30215269 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1858 327 333 90 52 chr1 166981112 166981267 -30214165 + RSINE1 SINE B4 5 165 0 7 1858 431 193 12 52 chr1 166981270 166981526 -30213906 + (CA)n Simple_repeat Simple_repeat 1 245 0 7 1858 22 0 0 0 chr1 166981536 166981558 -30213874 + AT_rich Low_complexity Low_complexity 1 22 0 7 1858 1875 108 45 10 chr1 166982088 166982397 -30213035 - ORR1A4 LTR MaLR -8 321 2 7 1858 408 372 70 16 chr1 166982623 166982809 -30212623 - B4A SINE B4 -94 198 3 7 1858 396 0 0 0 chr1 166982826 166982870 -30212562 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1858 637 243 164 10 chr1 166983022 166983230 -30212202 - L1MA6 LINE L1 -191 6109 5870 7 1858 339 25 0 0 chr1 166983296 166983336 -30212096 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1858 6255 50 0 5 chr1 166983428 166984192 -30211240 + L1Md_F2 LINE L1 5821 6580 -2 7 1858 452 293 55 43 chr1 166984197 166984432 -30211000 - L1MA9 LINE L1 -166 6146 5909 7 1858 228 154 0 0 chr1 166984859 166984898 -30210534 + B1F2 SINE Alu 1 39 -110 7 1858 517 178 124 0 chr1 166984887 166985016 -30210416 + B3 SINE B2 66 210 -6 7 1858 714 318 9 0 chr1 166985077 166985294 -30210138 + ID_B1 SINE B4 4 222 -2 7 1858 308 215 171 62 chr1 166985350 166985479 -30209953 + PB1D9 SINE Alu 1 143 -6 7 1859 918 122 14 7 chr1 166985759 166985900 -30209532 + B1_Mur3 SINE Alu 2 143 -6 7 1859 330 318 7 93 chr1 166986277 166986416 -30209016 + B1F2 SINE Alu 22 148 -1 7 1859 427 278 116 116 chr1 166986422 166986646 -30208786 + ID_B1 SINE B4 1 224 0 7 1859 406 279 62 52 chr1 166987049 166987242 -30208190 - Tigger1 DNA MER2_type -32 2386 2192 7 1859 239 274 41 0 chr1 166987295 166987368 -30208064 - Tigger1 DNA MER2_type -2339 79 4 7 1859 276 149 0 0 chr1 166987648 166987695 -30207737 + (CTATA)n Simple_repeat Simple_repeat 5 51 0 7 1859 230 200 0 107 chr1 166987725 166987781 -30207651 - MLT1A0 LTR MaLR -216 149 100 7 1859 579 294 14 14 chr1 166987888 166988033 -30207399 + RLTR18-int LTR ERVK 2090 2234 -3127 7 1859 701 200 96 6 chr1 166988037 166988203 -30207229 + B2_Mm2 SINE B2 1 181 -14 7 1859 1325 92 5 11 chr1 166988204 166988390 -30207042 + B2_Mm2 SINE B2 1 185 -10 7 1859 961 250 101 15 chr1 166988399 166988604 -30206828 + RLTR18-int LTR ERVK 2229 2456 -2905 7 1859 216 0 0 0 chr1 166988604 166988628 -30206804 + (CAT)n Simple_repeat Simple_repeat 3 26 0 7 1859 961 250 101 15 chr1 166988628 166988690 -30206742 + RLTR18-int LTR ERVK 2457 2519 -2842 7 1859 1652 223 37 75 chr1 166988695 166989150 -30206282 - RLTR18B LTR ERVK -4 508 71 7 1859 183 42 0 0 chr1 166989203 166989227 -30206205 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 1859 292 281 107 8 chr1 166989230 166989352 -30206080 + L1ME4a LINE L1 5985 6118 -6 7 1859 1699 169 116 5 chr1 166989550 166989964 -30205468 + MT2A LTR ERVL 3 462 -71 7 1859 1081 193 4 62 chr1 166989987 166990213 -30205219 + B3 SINE B2 4 216 0 7 1859 33 43 0 0 chr1 166990213 166990260 -30205172 + AT_rich Low_complexity Low_complexity 1 47 0 7 1859 268 73 0 42 chr1 166990262 166990333 -30205099 + MT2A LTR ERVL 466 533 0 7 1859 363 44 0 0 chr1 166990689 166990734 -30204698 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 7 1859 308 219 36 12 chr1 166990874 166990957 -30204475 - MIR SINE MIR -79 129 45 7 1859 2099 81 36 0 chr1 166991067 166991375 -30204057 + ORR1A2 LTR MaLR 1 319 -8 7 1859 21 57 0 0 chr1 166991518 166991553 -30203879 + AT_rich Low_complexity Low_complexity 1 35 0 7 1859 193 351 14 51 chr1 166991870 166992008 -30203424 + MIRb SINE MIR 115 247 -21 7 1859 393 207 0 0 chr1 166992127 166992214 -30203218 + (ATG)n Simple_repeat Simple_repeat 1 87 0 7 1859 742 126 7 7 chr1 166992213 166992349 -30203083 + (GGA)n Simple_repeat Simple_repeat 1 136 0 7 1859 2530 158 9 5 chr1 166992645 166993064 -30202368 - MTC LTR MaLR 0 421 1 7 1859 240 196 0 0 chr1 166993497 166993553 -30201879 + (GTTTG)n Simple_repeat Simple_repeat 1 56 0 7 1859 519 163 31 0 chr1 166993554 166993652 -30201780 - PB1D9 SINE Alu 0 120 20 7 1859 266 167 0 0 chr1 166993665 166993713 -30201719 - RMER15 LTR ERVL 0 575 528 7 1859 23 0 0 0 chr1 166993997 166994020 -30201412 + AT_rich Low_complexity Low_complexity 1 23 0 7 1859 553 155 232 45 chr1 166994120 166994270 -30201162 - RMER15 LTR ERVL -67 508 330 7 1859 1247 112 132 4 chr1 166994270 166994504 -30200928 + RLTR28 LTR ERVL 1 264 -260 7 1859 702 116 0 9 chr1 166994505 166994618 -30200814 - RLTR28B LTR ERVL -349 132 21 7 1859 729 249 70 5 chr1 166994623 166994837 -30200595 - MTEa LTR MaLR -151 228 1 7 1859 2701 136 25 27 chr1 166995212 166995727 -30199705 + RLTR28 LTR ERVL 1 514 -10 7 1859 243 234 73 66 chr1 166996451 166996588 -30198844 - L1MEg LINE L1 -3765 2243 2106 7 1859 282 294 41 70 chr1 166997168 166997340 -30198092 - L1MEg LINE L1 -5398 686 520 7 1859 820 28 0 0 chr1 166997688 166997794 -30197638 - L1Md_A LINE L1 0 6582 6477 7 1859 204 273 0 43 chr1 166998053 166998122 -30197310 + CT-rich Low_complexity Low_complexity 6 71 0 7 1859 946 303 14 14 chr1 166998896 166999187 -30196245 + B4 SINE B4 2 292 0 7 1859 366 23 0 0 chr1 166999190 166999233 -30196199 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1859 232 167 26 65 chr1 166999270 166999347 -30196085 + T-rich Low_complexity Low_complexity 1 74 0 7 1859 650 202 0 0 chr1 166999348 166999467 -30195965 - B1_Mur1 SINE Alu -7 142 24 7 1859 800 298 127 10 chr1 167000212 167000504 -30194928 + MLT1A0 LTR MaLR 40 365 0 1 1859 3784 153 153 16 chr1 167000644 167001260 -30194172 + RLTR25A LTR ERVK 1 685 -418 2 1859 387 0 0 0 chr1 167001260 167001303 -30194129 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1859 3784 153 153 16 chr1 167001303 167001432 -30194000 + RLTR25A LTR ERVK 686 848 -255 2 1859 994 81 73 7 chr1 167001692 167001829 -30193603 - B1_Mus2 SINE Alu -1 146 1 4 1859 948 167 147 93 chr1 167001876 167002134 -30193298 + RLTR25A LTR ERVK 832 1103 0 2 1859 275 342 43 43 chr1 167002300 167002462 -30192970 + L2 LINE L2 2730 2891 -528 5 1859 540 312 90 78 chr1 167002469 167002803 -30192629 + LTR81B LTR ERV1? 1 338 -1055 6 1859 3004 127 42 27 chr1 167002876 167003396 -30192036 + RLTR11A LTR ERVK 1 528 0 7 1859 192 158 0 0 chr1 167003900 167003938 -30191494 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 8 1859 243 173 0 0 chr1 167004881 167004933 -30190499 + (TATG)n Simple_repeat Simple_repeat 3 54 0 9 1859 216 0 0 0 chr1 167006588 167006612 -30188820 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1859 257 227 211 0 chr1 167006855 167006945 -30188487 - MIRm SINE MIR -54 214 99 1 1859 296 322 58 36 chr1 167007090 167007297 -30188135 - MIRc SINE MIR -21 241 50 1 1859 21 57 0 0 chr1 167008749 167008784 -30186648 + AT_rich Low_complexity Low_complexity 1 35 0 1 1859 4925 149 40 60 chr1 167008836 167009750 -30185682 + RMER19B LTR ERVK 1 896 -6 1 1859 1881 97 4 11 chr1 167011635 167011897 -30183535 + ORR1A3 LTR MaLR 67 326 0 1 1859 3155 31 0 0 chr1 167012550 167012904 -30182528 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1859 205 233 33 0 chr1 167012948 167013008 -30182424 - MIRc SINE MIR -128 140 79 1 1859 182 337 84 0 chr1 167013873 167013956 -30181476 + MIR SINE MIR 150 239 -23 1 1859 231 289 109 22 chr1 167014637 167014729 -30180703 - MIRb SINE MIR -6 262 163 1 1859 317 263 47 102 chr1 167015742 167015869 -30179563 - L2b LINE L2 0 3426 3291 2 1859 1987 136 31 0 chr1 167016860 167017177 -30178255 - ORR1A2 LTR MaLR 0 327 1 2 1859 7435 199 33 25 chr1 167017264 167017363 -30178069 + Lx7 LINE L1 6193 6291 -1405 2 1859 4523 14 0 0 chr1 167017363 167017856 -30177576 + MT2_Mm LTR ERVL 1 493 0 2 1859 7435 199 33 25 chr1 167017856 167019248 -30176184 + Lx7 LINE L1 6292 7696 0 2 1859 519 274 205 59 chr1 167019261 167019666 -30175766 - MLT1D LTR MaLR 0 505 40 2 1859 294 172 0 17 chr1 167019666 167019725 -30175707 + BC1_Mm scRNA scRNA 1 58 -94 2 1859 342 0 0 0 chr1 167020463 167020501 -30174931 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1859 1128 226 67 11 chr1 167020518 167020787 -30174645 - B4A SINE B4 -6 286 3 2 1859 243 246 0 50 chr1 167021024 167021084 -30174348 - LTR48 LTR ERV1 -724 63 7 2 1859 880 50 150 0 chr1 167023605 167023725 -30171707 + B1_Mur3 SINE Alu 2 139 -10 2 1859 828 258 0 11 chr1 167023733 167023917 -30171515 + B3A SINE B2 3 184 -14 3 1859 261 306 11 23 chr1 167024121 167024208 -30171224 - MTE2a LTR MaLR -16 363 278 3 1859 361 337 58 29 chr1 167024533 167024704 -30170728 + B3 SINE B2 40 215 -1 3 1859 475 262 232 0 chr1 167025093 167025257 -30170175 - Lx8 LINE L1 -182 7291 7090 3 1859 866 284 99 21 chr1 167025670 167025954 -30169478 - Lx8 LINE L1 -400 7073 6768 3 1859 759 104 0 0 chr1 167026701 167026816 -30168616 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 3 1859 1256 212 113 34 chr1 167026821 167027114 -30168318 + ORR1D1 LTR MaLR 6 321 -53 3 1859 1122 79 6 28 chr1 167027137 167027319 -30168113 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1859 982 112 0 7 chr1 167027424 167027559 -30167873 - B1_Mus2 SINE Alu -12 135 2 3 1859 1125 169 60 18 chr1 167027752 167027837 -30167595 + URR1A DNA MER1_type 1 95 -131 3 1859 2850 6 0 0 chr1 167027837 167028151 -30167281 - L1Md_A LINE L1 -2 6580 6267 3 1859 1125 169 60 18 chr1 167028151 167028282 -30167150 + URR1A DNA MER1_type 96 226 0 3 1859 1205 221 186 0 chr1 167028676 167028988 -30166444 + ORR1D2 LTR MaLR 1 370 0 4 1859 1018 205 189 33 chr1 167030175 167030378 -30165054 - MTD LTR MaLR 0 419 176 4 1859 1076 117 44 6 chr1 167030378 167030558 -30164874 + B2_Mm2 SINE B2 2 188 -7 4 1859 1018 205 189 33 chr1 167030558 167030713 -30164719 - MTD LTR MaLR -244 175 6 4 1859 198 0 0 0 chr1 167030764 167030786 -30164646 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4 1859 1155 61 0 45 chr1 167030817 167030972 -30164460 - B1_Mus1 SINE Alu 0 148 1 4 1859 216 0 0 0 chr1 167030974 167030998 -30164434 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1859 312 341 43 7 chr1 167031041 167031180 -30164252 + B1F SINE Alu 1 144 -5 4 1859 353 77 0 19 chr1 167031237 167031290 -30164142 - HAL1-3A_ME LINE L1 -831 2027 1976 4 1859 596 232 0 6 chr1 167031305 167031478 -30163954 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1859 201 225 0 0 chr1 167031954 167031994 -30163438 + MIRb SINE MIR 180 219 -49 4 1859 273 57 0 0 chr1 167032019 167032054 -30163378 + (TGG)n Simple_repeat Simple_repeat 1 35 0 5 1859 180 231 0 0 chr1 167032063 167032115 -30163317 + (ATG)n Simple_repeat Simple_repeat 3 54 0 5 1859 1301 165 155 23 chr1 167033008 167033059 -30162373 + RLTR11A2 LTR ERVK 184 230 -297 5 1859 3182 40 24 0 chr1 167033059 167033435 -30161997 + IAPEY_LTR LTR ERVK 1 385 0 5 1859 1301 165 155 23 chr1 167033435 167033687 -30161745 + RLTR11A2 LTR ERVK 231 527 0 5 1859 226 345 84 25 chr1 167033714 167033833 -30161599 - MLT1A LTR MaLR -51 323 198 5 1859 648 70 0 0 chr1 167033876 167033962 -30161470 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1859 695 131 0 28 chr1 167033958 167034099 -30161333 + GA-rich Low_complexity Low_complexity 2 138 0 5 1859 2234 86 22 9 chr1 167034136 167034453 -30160979 - ORR1A4 LTR MaLR -8 321 1 5 1859 316 250 11 22 chr1 167034460 167034550 -30160882 + (CATA)n Simple_repeat Simple_repeat 4 92 0 5 1859 704 204 54 13 chr1 167034757 167034906 -30160526 - RMER30 DNA MER1_type -46 156 2 5 1859 25 0 0 0 chr1 167035749 167035774 -30159658 + AT_rich Low_complexity Low_complexity 1 25 0 6 1859 2707 64 0 0 chr1 167036513 167036858 -30158574 + L1Md_F2 LINE L1 6238 6582 0 6 1859 183 336 58 51 chr1 167037276 167037414 -30158018 + L2 LINE L2 2727 2865 -554 6 1859 284 318 55 27 chr1 167037487 167037597 -30157835 + MIR SINE MIR 139 251 -11 6 1859 717 196 143 38 chr1 167037629 167037916 -30157516 + RMER17C LTR ERVK 92 408 -2 6 1859 798 144 43 7 chr1 167037920 167038060 -30157372 - URR1B DNA MER1_type -35 190 46 6 1859 226 265 53 64 chr1 167038283 167038381 -30157051 + MIR SINE MIR 54 149 -113 6 1859 461 87 14 14 chr1 167038583 167038653 -30156779 - ORR1C2 LTR MaLR -1 383 314 6 1859 479 203 118 8 chr1 167038650 167038769 -30156663 - B2_Mm2 SINE B2 -8 187 56 6 1859 1609 133 112 3 chr1 167038767 167039054 -30156378 - ORR1C2 LTR MaLR -66 318 1 6 1859 581 323 132 27 chr1 167039060 167039356 -30156076 + LTR16D LTR ERVL 316 642 -9 7 1859 22 56 0 0 chr1 167041291 167041327 -30154105 + AT_rich Low_complexity Low_complexity 1 36 0 7 1859 477 249 31 62 chr1 167041659 167041864 -30153568 - RMER6A LTR ERVK -265 196 1 7 1859 214 325 12 49 chr1 167042070 167042151 -30153281 + RSINE1 SINE B4 11 88 -77 7 1859 21 36 0 0 chr1 167042204 167042232 -30153200 + AT_rich Low_complexity Low_complexity 1 28 0 7 1859 421 280 45 8 chr1 167042395 167042528 -30152904 - MLT1A1 LTR MaLR -1 407 270 7 1859 2196 110 28 0 chr1 167042570 167042888 -30152544 - ORR1A2 LTR MaLR 0 327 1 7 1859 490 204 65 0 chr1 167043108 167043201 -30152231 + PB1D7 SINE Alu 22 120 0 7 1859 255 159 23 0 chr1 167043391 167043435 -30151997 - MTEa LTR MaLR -321 58 14 7 1859 191 161 18 0 chr1 167043501 167043557 -30151875 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 1859 34 0 0 0 chr1 167043558 167043592 -30151840 + AT_rich Low_complexity Low_complexity 1 34 0 8 1859 443 313 40 81 chr1 167043695 167043726 -30151706 + B4A SINE B4 55 78 -214 8 1859 878 201 0 0 chr1 167043726 167043875 -30151557 + B1_Mur1 SINE Alu 1 149 0 8 1859 25 31 0 0 chr1 167046057 167046089 -30149343 + AT_rich Low_complexity Low_complexity 1 32 0 8 1859 400 231 0 88 chr1 167046171 167046285 -30149147 + HAL1-2a_MD LINE L1 2326 2429 -595 8 1859 962 209 61 5 chr1 167046285 167046482 -30148950 + B3 SINE B2 3 210 -6 8 1859 257 274 32 129 chr1 167046490 167046645 -30148787 - Lx8 LINE L1 -140 7333 7194 8 1859 383 250 143 0 chr1 167046646 167046730 -30148702 - B1F SINE Alu -51 98 3 8 1859 267 272 0 0 chr1 167046804 167046896 -30148536 + (TA)n Simple_repeat Simple_repeat 2 93 0 8 1859 379 250 47 0 chr1 167047041 167047142 -30148290 - PB1D10 SINE Alu -5 115 8 8 1859 185 226 65 0 chr1 167047229 167047291 -30148141 + L3 LINE CR1 2730 2795 -1694 9 1859 3273 66 5 0 chr1 167047705 167048114 -30147318 - L1_Mus1 LINE L1 0 6567 6157 9 1859 318 273 53 26 chr1 167048266 167048379 -30147053 - B1F2 SINE Alu -2 147 32 9 1859 239 104 21 0 chr1 167050389 167050437 -30144995 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 9 1859 318 87 0 0 chr1 167050565 167050611 -30144821 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1859 255 125 0 0 chr1 167051168 167051208 -30144224 + (ATG)n Simple_repeat Simple_repeat 2 41 0 9 1859 419 220 106 32 chr1 167051718 167051812 -30143620 + RSINE1 SINE B4 4 104 -61 9 1859 294 276 10 58 chr1 167051973 167052077 -30143355 - MTE2a LTR MaLR 0 379 281 9 1859 458 274 111 47 chr1 167052162 167052334 -30143098 - B3A SINE B2 -15 183 1 9 1859 380 284 42 21 chr1 167052351 167052538 -30142894 - MTE2a LTR MaLR -233 186 1 9 1859 721 212 184 5 chr1 167052623 167052808 -30142624 - ID_B1 SINE B4 -5 219 2 9 1859 430 337 22 27 chr1 167052832 167053015 -30142417 - MER57D LTR ERV1 -2 409 228 1 1859 249 144 16 56 chr1 167053137 167053262 -30142170 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1859 502 250 121 34 chr1 167053262 167053411 -30142021 - RSINE1 SINE B4 0 165 4 1 1859 225 300 17 0 chr1 167053450 167053510 -30141922 - MER57D LTR ERV1 -293 79 19 1 1859 833 151 7 52 chr1 167055065 167055219 -30140213 + B1_Mur2 SINE Alu 3 149 0 1 1859 28 0 0 0 chr1 167055288 167055316 -30140116 + AT_rich Low_complexity Low_complexity 1 28 0 1 1859 253 330 74 11 chr1 167055934 167056029 -30139403 + MER110 LTR ERV1 387 487 -4 1 1859 1951 169 26 26 chr1 167056045 167056429 -30139003 - Lx4B LINE L1 -17 7041 6658 1 1859 2264 126 3 20 chr1 167056659 167057007 -30138425 - RLTR33 LTR ERVK -336 342 1 1 1859 2766 151 80 17 chr1 167057162 167057598 -30137834 + RLTR20B2 LTR ERVK 1 465 -95 1 1859 198 0 0 0 chr1 167057598 167057620 -30137812 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1859 405 0 0 0 chr1 167057620 167057664 -30137768 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1859 2766 151 80 17 chr1 167057664 167057753 -30137679 + RLTR20B2 LTR ERVK 466 559 -1 1 1859 1343 275 112 35 chr1 167058029 167058621 -30136811 + L1MB2 LINE L1 5417 6053 -118 1 1859 905 240 19 5 chr1 167058628 167058837 -30136595 + B3 SINE B2 3 214 -2 1 1859 207 0 0 0 chr1 167060384 167060407 -30135025 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 1859 23 0 0 0 chr1 167061752 167061775 -30133657 + AT_rich Low_complexity Low_complexity 1 23 0 1 1859 729 274 46 0 chr1 167061835 167062010 -30133422 + B3A SINE B2 1 183 -15 1 1859 729 309 52 20 chr1 167062074 167062151 -30133281 - LTR40a LTR ERVL -5 514 439 1 1859 411 68 0 0 chr1 167062151 167062210 -30133222 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1859 729 309 52 20 chr1 167062210 167062380 -30133052 - LTR40a LTR ERVL -81 438 260 1 1859 366 107 0 0 chr1 167062419 167062475 -30132957 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1859 945 94 22 0 chr1 167062906 167063044 -30132388 - B1_Mur3 SINE Alu 0 149 9 1 1859 275 262 86 10 chr1 167063727 167063828 -30131604 + MIRc SINE MIR 60 170 -106 1 1859 541 286 50 64 chr1 167064063 167064343 -30131089 + L1MB7 LINE L1 5843 6118 -66 1 1859 297 0 0 0 chr1 167064406 167064439 -30130993 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1 1859 22 35 0 0 chr1 167064439 167064468 -30130964 + AT_rich Low_complexity Low_complexity 1 29 0 1 1859 327 206 16 0 chr1 167064569 167064632 -30130800 + MIRb SINE MIR 196 259 -9 1 1859 942 147 18 12 chr1 167064696 167064861 -30130571 - RLTR17 LTR ERVK -328 364 199 1 1859 614 184 161 7 chr1 167064933 167065070 -30130362 + MTD LTR MaLR 1 158 -261 1 1859 1227 225 4 8 chr1 167065360 167065602 -30129830 - MTD LTR MaLR -15 404 164 1 1859 837 245 21 5 chr1 167065793 167065986 -30129446 - MTD LTR MaLR -183 236 41 1 1859 185 400 40 0 chr1 167067652 167067777 -30127655 - MER5B DNA MER1_type -45 133 4 1 1859 412 320 75 0 chr1 167067985 167068132 -30127300 - L2b LINE L2 -8 3367 3210 1 1859 339 269 18 36 chr1 167069798 167069910 -30125522 + MIRb SINE MIR 73 182 -86 1 1859 310 266 0 0 chr1 167070881 167070990 -30124442 + GA-rich Low_complexity Low_complexity 1 109 0 1 1859 702 266 70 0 chr1 167071101 167071171 -30124261 + ID SINE ID 2 82 -142 1 1859 486 261 36 9 chr1 167071171 167071283 -30124149 + PB1D10 SINE Alu 1 115 -2 1 1859 1021 130 0 0 chr1 167071323 167071469 -30123963 - B1_Mus1 SINE Alu 0 148 3 1 1859 754 155 274 27 chr1 167071592 167071778 -30123654 + ORR1B2 LTR MaLR 1 232 -135 1 1859 261 237 17 0 chr1 167071907 167071966 -30123466 + L2a LINE L2 3365 3424 -2 1 1859 288 0 0 0 chr1 167072406 167072438 -30122994 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1859 234 305 90 32 chr1 167073728 167073884 -30121548 + LTR48 LTR ERV1 611 775 -12 1 1859 1870 208 25 8 chr1 167074302 167074656 -30120776 + Lx6 LINE L1 7029 7388 -72 1 1859 609 63 10 21 chr1 167075616 167075713 -30119719 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 1 1859 799 114 0 0 chr1 167075714 167075828 -30119604 - B1_Mur4 SINE Alu -35 115 2 1 1859 1206 56 0 0 chr1 167076087 167076229 -30119203 + B1_Mus2 SINE Alu 2 143 -4 1 1859 970 162 20 40 chr1 167076250 167076449 -30118983 + B2_Mm2 SINE B2 1 195 0 1 1859 459 0 0 0 chr1 167076720 167076771 -30118661 + (GAA)n Simple_repeat Simple_repeat 1 51 0 1 1859 925 158 0 11 chr1 167076771 167076950 -30118482 + GA-rich Low_complexity Low_complexity 2 178 0 1 1859 353 123 15 0 chr1 167076941 167077006 -30118426 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1859 508 279 131 5 chr1 167077087 167077285 -30118147 + ID_B1 SINE B4 2 224 0 1 1859 1006 102 0 0 chr1 167077288 167077425 -30118007 + B1_Mur4 SINE Alu 1 137 -13 1 1859 277 266 0 0 chr1 167078431 167078510 -30116922 + (CAGAGA)n Simple_repeat Simple_repeat 5 83 0 1 1859 198 0 0 0 chr1 167078556 167078578 -30116854 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1859 1356 46 103 6 chr1 167079080 167079238 -30116194 + B2_Mm2 SINE B2 2 177 -18 1 1859 207 0 0 0 chr1 167079238 167079261 -30116171 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1859 1356 46 103 6 chr1 167079261 167079276 -30116156 + B2_Mm2 SINE B2 178 192 -3 1 1859 3574 13 10 0 chr1 167079908 167080300 -30115132 + MTA_Mm LTR MaLR 1 396 0 1 1859 198 0 0 0 chr1 167082069 167082091 -30113341 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1859 195 262 60 48 chr1 167084125 167084209 -30111223 + L2c LINE L2 3125 3209 -178 1 1859 297 128 0 0 chr1 167085345 167085392 -30110040 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1859 629 204 0 9 chr1 167085448 167085550 -30109882 + B1_Mur1 SINE Alu 35 136 -13 1 1859 501 17 0 0 chr1 167085550 167085608 -30109824 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 1 1859 629 204 0 9 chr1 167085608 167085619 -30109813 + B1_Mur1 SINE Alu 137 147 -2 1 1859 1139 295 174 27 chr1 167086197 167086870 -30108562 + L1MB8 LINE L1 5394 6174 -4 1 1859 1213 41 7 0 chr1 167086918 167087064 -30108368 + B1_Mm SINE Alu 1 147 0 1 1859 192 135 0 0 chr1 167087064 167087101 -30108331 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 1859 432 171 0 0 chr1 167087919 167088001 -30107431 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1859 224 302 0 57 chr1 167088417 167088540 -30106892 + GA-rich Low_complexity Low_complexity 1 116 0 1 1859 459 0 0 0 chr1 167088627 167088678 -30106754 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1859 387 0 0 0 chr1 167088825 167088868 -30106564 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1859 362 255 87 41 chr1 167092566 167092727 -30102705 - ORR1D1 LTR MaLR -169 215 9 1 1859 498 274 0 0 chr1 167092732 167092856 -30102576 - Lx8 LINE L1 -1567 5906 5783 1 1859 3072 249 103 22 chr1 167092945 167093491 -30101941 - Lx8 LINE L1 -828 5052 4465 1 1859 330 26 0 0 chr1 167093491 167093530 -30101902 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1859 3072 249 103 22 chr1 167093530 167094051 -30101381 - Lx8 LINE L1 -1416 4464 3901 1 1859 339 282 35 35 chr1 167094076 167094190 -30101242 + L1MA5A LINE L1 5775 5888 -409 1 1859 442 261 34 40 chr1 167094447 167094595 -30100837 - MLT1E1A LTR MaLR -9 671 525 1 1859 1088 195 35 68 chr1 167094560 167094822 -30100610 + ORR1D1 LTR MaLR 19 324 -50 1 1859 1193 107 5 0 chr1 167094828 167095052 -30100380 + (TAGA)n Simple_repeat Simple_repeat 1 225 0 1 1859 868 224 71 0 chr1 167095800 167095996 -30099436 + B3 SINE B2 1 210 -6 1 1859 327 250 52 35 chr1 167096357 167096473 -30098959 + L1MCa LINE L1 1776 1893 -4524 1 1859 836 193 0 0 chr1 167096717 167096862 -30098570 + B1_Mur4 SINE Alu 5 149 -1 1 1859 331 333 42 83 chr1 167096952 167097117 -30098315 + L1MCa LINE L1 1953 2118 -4390 1 1859 1465 79 0 5 chr1 167097117 167097308 -30098124 + B2_Mm2 SINE B2 3 192 -3 1 1859 331 333 42 83 chr1 167097308 167097407 -30098025 + L1MCa LINE L1 2119 2206 -4302 1 1859 249 279 33 65 chr1 167097407 167097499 -30097933 + ID_B1 SINE B4 73 161 -63 1 1859 1663 283 124 68 chr1 167097548 167099155 -30096277 - L1M2 LINE L1 -2199 3944 2212 1 1859 1110 89 0 0 chr1 167099155 167099301 -30096131 - B1_Mus1 SINE Alu -2 146 1 1 1859 1000 303 134 75 chr1 167099301 167099398 -30096034 - L1M2 LINE L1 -3636 2211 2113 1 1859 1308 242 115 3 chr1 167099419 167099783 -30095649 - Lx6 LINE L1 -268 7192 6788 1 1859 576 77 0 0 chr1 167099787 167099865 -30095567 + (T)n Simple_repeat Simple_repeat 1 78 0 1 1859 387 122 43 155 chr1 167099932 167100048 -30095384 - Lx LINE L1 -1 6653 6551 1 1859 1049 264 69 58 chr1 167100333 167100679 -30094753 - ORR1E LTR MaLR 0 359 10 1 1859 287 268 141 38 chr1 167100738 167101029 -30094403 - MusHAL1 LINE L1 -2121 591 271 1 1859 410 301 142 0 chr1 167101493 167101669 -30093763 - MTEa LTR MaLR 0 379 179 1 1859 2920 12 0 0 chr1 167101717 167102039 -30093393 - RLTRETN_Mm LTR ERVK 0 322 1 1 1859 17014 18 22 6 chr1 167102039 167103993 -30091439 - MMETn-int LTR ERVK 0 4844 2859 1 1859 2908 16 0 0 chr1 167104002 167104324 -30091108 - RLTRETN_Mm LTR ERVK 0 322 1 1 1859 23 0 0 0 chr1 167105073 167105096 -30090336 + AT_rich Low_complexity Low_complexity 1 23 0 1 1859 493 222 50 33 chr1 167105111 167105232 -30090200 - ID_B1 SINE B4 -76 148 26 1 1859 21 36 0 0 chr1 167105768 167105796 -30089636 + AT_rich Low_complexity Low_complexity 1 28 0 1 1859 25 31 0 0 chr1 167105861 167105893 -30089539 + AT_rich Low_complexity Low_complexity 1 32 0 1 1859 346 237 129 0 chr1 167109934 167110027 -30085405 + PB1D10 SINE Alu 8 112 -5 1 1859 934 54 139 0 chr1 167110385 167110514 -30084918 + B1_Mus2 SINE Alu 1 147 0 1 1859 210 71 0 0 chr1 167110537 167110565 -30084867 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1859 636 139 83 0 chr1 167110719 167110827 -30084605 - B1_Mur3 SINE Alu -31 118 2 1 1859 277 189 57 0 chr1 167110827 167110877 -30084555 + MER45B DNA Tip100 984 1036 -4 1 1859 828 199 71 43 chr1 167111889 167112099 -30083333 + B3 SINE B2 1 216 0 1 1859 279 0 0 0 chr1 167114867 167114898 -30080534 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1859 242 246 33 0 chr1 167115009 167115070 -30080362 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 2 1859 358 213 96 39 chr1 167115336 167115492 -30079940 - MIR SINE MIR -34 228 64 2 1859 245 260 38 75 chr1 167115607 167115740 -30079692 - MIRb SINE MIR -11 257 130 2 1859 541 200 19 19 chr1 167116425 167116532 -30078900 + B1_Mur2 SINE Alu 42 148 -1 2 232 318 227 0 0 chr1 167116785 167116860 -30078572 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1860 902 84 221 0 chr1 167118579 167118733 -30076699 + B2_Mm1t SINE B2 1 188 -5 2 1860 263 288 86 40 chr1 167118744 167118896 -30076536 + RSINE1 SINE B4 5 163 -2 2 1860 264 122 0 0 chr1 167118916 167118957 -30076475 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2 1860 387 0 0 0 chr1 167119714 167119757 -30075675 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1860 414 235 0 0 chr1 167119814 167119895 -30075537 + ID4 SINE ID 1 81 -2 2 1860 2902 173 59 63 chr1 167119907 167120618 -30074814 + Lx9 LINE L1 6915 7622 -22 2 1860 239 0 32 0 chr1 167120627 167120658 -30074774 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1860 338 180 16 0 chr1 167121166 167121227 -30074205 + tRNA-Asp-GAY tRNA tRNA 1 62 -13 2 1860 189 0 0 0 chr1 167121271 167121292 -30074140 + (TGG)n Simple_repeat Simple_repeat 2 22 0 2 1860 645 134 36 0 chr1 167121302 167121414 -30074018 + B1_Mus2 SINE Alu 27 142 -5 2 1860 22 35 0 0 chr1 167122230 167122259 -30073173 + AT_rich Low_complexity Low_complexity 1 29 0 2 1860 261 83 0 0 chr1 167122544 167122580 -30072852 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1860 926 68 121 0 chr1 167122580 167122712 -30072720 - B1_Mus1 SINE Alu 0 148 1 2 1860 23 33 0 0 chr1 167123052 167123082 -30072350 + AT_rich Low_complexity Low_complexity 1 30 0 2 1860 1105 257 102 49 chr1 167123092 167123542 -30071890 + RMER5 LTR ERV1 50 523 -11 2 1860 371 257 14 0 chr1 167125167 167125241 -30070191 + ID4_ SINE ID 1 75 -8 2 1860 225 333 0 43 chr1 167125504 167125598 -30069834 + MIRc SINE MIR 65 154 -114 2 1860 1187 145 30 39 chr1 167125726 167125954 -30069478 + ORR1B1 LTR MaLR 1 226 -168 2 1860 221 59 0 29 chr1 167125954 167125989 -30069443 + B3A SINE B2 2 35 -163 2 1860 238 324 114 7 chr1 167125973 167126113 -30069319 + Zaphod DNA Tip100 502 656 -3375 2 1860 276 30 0 0 chr1 167126197 167126230 -30069202 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 1860 2167 28 0 12 chr1 167126328 167126585 -30068847 - L1Md_F2 LINE L1 -14 6568 6315 2 1860 870 112 145 30 chr1 167126594 167126760 -30068672 - B2_Mm2 SINE B2 -8 187 3 2 1860 904 62 0 15 chr1 167126767 167126897 -30068535 + (TTC)n Simple_repeat Simple_repeat 2 129 0 2 1860 1160 62 0 0 chr1 167126897 167127041 -30068391 - B1_Mus1 SINE Alu -3 145 2 2 1860 405 0 0 0 chr1 167128648 167128693 -30066739 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1860 259 355 24 34 chr1 167128778 167128921 -30066511 + MIRm SINE MIR 23 166 -102 2 1860 379 241 0 12 chr1 167128966 167129050 -30066382 + L1MB8 LINE L1 4894 4976 -1170 2 1860 382 291 42 21 chr1 167129265 167129409 -30066023 + L1MB8 LINE L1 4952 5098 -1048 2 1860 360 268 103 73 chr1 167129410 167129437 -30065995 + B4 SINE B4 63 182 -110 2 1860 641 171 78 0 chr1 167129437 167129566 -30065866 + B1_Mur2 SINE Alu 1 139 -10 2 1860 263 68 68 0 chr1 167129598 167129642 -30065790 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 2 1860 183 42 0 0 chr1 167129838 167129862 -30065570 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1860 821 260 159 42 chr1 167129872 167130141 -30065291 + L1MB8 LINE L1 5336 5637 -541 2 1860 1338 106 5 26 chr1 167130141 167130335 -30065097 - B2_Mm1t SINE B2 -3 190 1 2 1860 821 260 159 42 chr1 167130335 167130567 -30064865 + L1MB8 LINE L1 5638 5896 -282 2 1860 462 261 28 137 chr1 167130644 167130893 -30064539 + RLTR40 LTR ERVK 75 296 -521 2 1860 338 242 218 35 chr1 167131270 167131467 -30063965 + L1MB8 LINE L1 5892 6124 -54 2 1860 384 77 0 0 chr1 167131520 167131572 -30063860 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1860 814 219 68 97 chr1 167131618 167131866 -30063566 - B4A SINE B4 -49 243 3 2 1860 251 329 0 0 chr1 167132185 167132267 -30063165 - RMER30 DNA MER1_type -119 83 2 2 1860 1574 163 69 26 chr1 167132506 167132896 -30062536 - RMER17C LTR ERVK -3 407 1 2 1860 1879 157 47 12 chr1 167132965 167133307 -30062125 - ORR1B1 LTR MaLR 0 394 41 2 1860 309 200 178 0 chr1 167133357 167133447 -30061985 + B1_Mus2 SINE Alu 42 147 0 2 1860 750 74 0 0 chr1 167133510 167133618 -30061814 + B1_Mus2 SINE Alu 40 147 0 2 1860 319 228 52 0 chr1 167133620 167133756 -30061676 + GA-rich Low_complexity Low_complexity 5 147 0 2 1860 3028 62 8 3 chr1 167134169 167134559 -30060873 - L1_Mus1 LINE L1 0 6567 6176 2 1860 324 260 125 0 chr1 167134582 167134686 -30060746 + PB1D10 SINE Alu 1 117 0 2 1860 488 185 52 75 chr1 167134716 167134850 -30060582 + B4A SINE B4 162 292 0 2 1860 255 241 25 25 chr1 167134857 167134938 -30060494 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1860 213 228 24 30 chr1 167134951 167135118 -30060314 + (CA)n Simple_repeat Simple_repeat 2 167 0 2 1860 291 238 32 0 chr1 167135162 167135225 -30060207 + MLT1D LTR MaLR 1 65 -440 2 1860 348 270 80 90 chr1 167135326 167135554 -30059878 + MLT1D LTR MaLR 218 481 -24 2 1860 217 231 0 37 chr1 167135839 167135893 -30059539 + L2a LINE L2 3354 3405 -21 2 1860 741 135 112 8 chr1 167136133 167136267 -30059165 + B1_Mus1 SINE Alu 1 148 0 2 1860 899 120 49 7 chr1 167136609 167136752 -30058680 - B1_Mur4 SINE Alu -1 149 1 2 1860 226 0 0 56 chr1 167136959 167136995 -30058437 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1860 997 72 0 0 chr1 167136996 167137134 -30058298 - B1_Mus1 SINE Alu 0 148 11 2 1860 1702 205 158 63 chr1 167137554 167138270 -30057162 + RMER12 LTR ERVK 1 700 -1148 2 1860 273 119 0 0 chr1 167138441 167138483 -30056949 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 2 1860 1984 160 65 31 chr1 167138826 167139239 -30056193 + RMER16 LTR ERVK 107 533 0 2 1860 2563 25 3 0 chr1 167139266 167139586 -30055846 + IAPEY3_LTR LTR ERVK 1 321 -11 2 1860 6305 93 29 1 chr1 167139586 167140461 -30054971 + IAPLTR4_I LTR ERVK 158 1056 -414 2 1860 6055 89 2 0 chr1 167140436 167141231 -30054201 - IAPEY3-int LTR ERVK -5873 1807 1011 2 1860 370 67 0 0 chr1 167141220 167141265 -30054167 - IAPLTR4_I LTR ERVK -1046 424 380 2 1860 672 12 0 0 chr1 167141265 167141346 -30054086 - IAPEY3_LTR LTR ERVK -251 81 1 2 1860 1187 68 0 0 chr1 167141959 167142106 -30053326 + B1_Mus1 SINE Alu 1 147 -1 2 1860 840 217 305 21 chr1 167142119 167142444 -30052988 + Lx8 LINE L1 7048 7464 -9 2 1860 282 257 117 87 chr1 167143447 167143643 -30051789 - L1MCc LINE L1 -5938 485 284 2 1860 1290 96 36 31 chr1 167143643 167143836 -30051596 + B2_Mm2 SINE B2 1 194 -1 2 1860 904 174 24 0 chr1 167143847 167144014 -30051418 + Lx9 LINE L1 7306 7476 -168 2 1860 280 205 51 0 chr1 167144033 167144111 -30051321 + Lx9 LINE L1 7543 7624 -20 2 1860 351 225 146 0 chr1 167144138 167144289 -30051143 - L1MCc LINE L1 -6172 251 79 2 1860 256 208 187 24 chr1 167144512 167144635 -30050797 - MER2 DNA MER2_type -105 240 98 2 1860 25 51 0 0 chr1 167145222 167145261 -30050171 + AT_rich Low_complexity Low_complexity 1 39 0 2 1860 314 213 88 24 chr1 167146632 167146757 -30048675 + Lx9 LINE L1 7510 7642 -2 2 1860 2751 140 118 29 chr1 167146971 167147717 -30047715 + RLTR25A LTR ERVK 18 807 -221 2 1860 385 171 236 9 chr1 167147699 167147805 -30047627 + RLTR25A LTR ERVK 974 1103 0 2 1860 32 57 0 0 chr1 167147977 167148030 -30047402 + AT_rich Low_complexity Low_complexity 1 53 0 2 1860 575 49 37 0 chr1 167148107 167148189 -30047243 - B1_Mus2 SINE Alu 0 147 63 2 1860 586 174 19 20 chr1 167148235 167148353 -30047079 + B1_Mur2 SINE Alu 6 122 -27 2 1860 412 153 24 0 chr1 167148362 167148447 -30046985 + GA-rich Low_complexity Low_complexity 2 88 0 2 1860 971 126 0 6 chr1 167148459 167148619 -30046813 + (GAAA)n Simple_repeat Simple_repeat 4 162 0 2 1860 21 0 0 0 chr1 167149036 167149057 -30046375 + AT_rich Low_complexity Low_complexity 1 21 0 2 1860 312 125 272 12 chr1 167149199 167149280 -30046152 + B1_Mur2 SINE Alu 21 122 -27 2 1860 183 272 105 3 chr1 167149373 167149465 -30045967 + MIR SINE MIR 32 135 -133 2 1860 813 192 7 7 chr1 167149766 167149913 -30045519 - B1_Mus1 SINE Alu 0 148 2 2 1860 2367 100 19 6 chr1 167150614 167150937 -30044495 + ORR1A2 LTR MaLR 1 327 0 2 1860 395 276 150 14 chr1 167151105 167151252 -30044180 + B4 SINE B4 125 291 -1 2 1860 670 221 201 55 chr1 167151296 167151550 -30043882 + B4A SINE B4 2 292 0 2 1860 935 210 56 0 chr1 167152202 167152397 -30043035 + B3 SINE B2 5 210 -6 2 1860 277 304 9 56 chr1 167153150 167153258 -30042174 + B4A SINE B4 29 131 -161 2 1860 230 239 14 0 chr1 167153261 167153332 -30042100 + L1MB2 LINE L1 6069 6140 -31 2 1860 793 231 45 15 chr1 167153901 167154103 -30041329 - B3 SINE B2 -6 210 3 2 1860 799 174 7 14 chr1 167154196 167154342 -30041090 + B1_Mur4 SINE Alu 6 150 0 2 1860 888 158 30 12 chr1 167154360 167154553 -30040879 + B2_Mm2 SINE B2 4 215 -1 2 1860 399 123 0 0 chr1 167154778 167154859 -30040573 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1860 1187 194 24 0 chr1 167154863 167155074 -30040358 - B3 SINE B2 0 216 1 2 1860 207 0 0 0 chr1 167155093 167155116 -30040316 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1860 207 0 0 0 chr1 167155133 167155156 -30040276 + (CGTG)n Simple_repeat Simple_repeat 2 24 0 2 1860 596 14 14 0 chr1 167155511 167155584 -30039848 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1860 541 165 168 32 chr1 167156238 167156363 -30039069 + B1_Mus2 SINE Alu 2 143 -4 2 1860 296 266 229 0 chr1 167156385 167156494 -30038938 - RSINE1 SINE B4 -29 136 3 2 1860 638 128 136 0 chr1 167156812 167156937 -30038495 + B1_Mur1 SINE Alu 1 142 -7 2 1860 486 136 0 0 chr1 167156946 167157027 -30038405 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 3 1860 28 29 0 0 chr1 167157246 167157281 -30038151 + AT_rich Low_complexity Low_complexity 1 35 0 3 1860 304 250 95 32 chr1 167157313 167157408 -30038024 + PB1D10 SINE Alu 17 117 0 3 1860 23 33 0 0 chr1 167157440 167157470 -30037962 + AT_rich Low_complexity Low_complexity 1 30 0 3 1860 22 0 0 0 chr1 167157809 167157831 -30037601 + AT_rich Low_complexity Low_complexity 1 22 0 3 1860 284 324 6 63 chr1 167159130 167159269 -30036163 + MER102a DNA MER1_type 120 252 -78 3 1860 896 193 132 10 chr1 167159290 167159494 -30035938 + Lx9 LINE L1 6692 6920 -724 3 1860 385 179 76 17 chr1 167159536 167159655 -30035777 + Lx9 LINE L1 7518 7643 -1 3 1860 1161 110 33 6 chr1 167160056 167160239 -30035193 + B2_Mm2 SINE B2 1 188 -7 3 1860 634 188 49 28 chr1 167160505 167160647 -30034785 - B1_Mus2 SINE Alu -2 145 1 3 1860 545 206 56 49 chr1 167160753 167160896 -30034536 + B1_Mur1 SINE Alu 6 149 0 3 1860 1140 98 46 0 chr1 167160907 167161080 -30034352 + B2_Mm2 SINE B2 2 182 -13 3 1860 329 127 0 18 chr1 167161111 167161167 -30034265 + B2_Mm2 SINE B2 47 101 -94 3 1860 861 196 0 0 chr1 167161247 167161385 -30034047 + B1_Mur1 SINE Alu 3 140 -9 3 1860 225 0 0 0 chr1 167161389 167161414 -30034018 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1860 1165 48 7 0 chr1 167161617 167161763 -30033669 - B1_Mus1 SINE Alu 0 148 2 3 1860 633 198 86 0 chr1 167162187 167162303 -30033129 + B1_Mur4 SINE Alu 6 131 -19 3 1860 210 150 0 0 chr1 167162318 167162358 -30033074 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 3 1860 353 183 280 0 chr1 167163105 167163198 -30032234 + PB1D9 SINE Alu 2 120 0 3 1860 810 198 0 0 chr1 167163228 167163405 -30032027 + GA-rich Low_complexity Low_complexity 2 178 0 3 1860 234 169 0 0 chr1 167163404 167163469 -30031963 + A-rich Low_complexity Low_complexity 2 66 0 3 1860 22 35 0 0 chr1 167163696 167163725 -30031707 + AT_rich Low_complexity Low_complexity 1 29 0 3 1860 496 132 0 21 chr1 167164407 167164500 -30030932 - PB1D9 SINE Alu -29 91 1 3 1860 482 229 51 51 chr1 167164537 167164675 -30030757 + B1_Mur2 SINE Alu 2 139 -10 3 1860 808 163 50 0 chr1 167164688 167164829 -30030603 + B1_Mur2 SINE Alu 1 148 -1 3 1860 1020 67 13 5 chr1 167165022 167165172 -30030260 + B1_Mus2 SINE Alu 2 145 -2 3 1860 261 75 0 0 chr1 167165172 167165212 -30030220 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1860 250 225 10 144 chr1 167165472 167165576 -30029856 + Charlie2b DNA MER1_type 366 455 -2327 3 1860 180 0 0 0 chr1 167165749 167165769 -30029663 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1860 300 53 0 0 chr1 167166804 167166842 -30028590 + (CTCGG)n Simple_repeat Simple_repeat 5 42 0 3 1860 405 248 45 45 chr1 167168247 167168357 -30027075 - ID_B1 SINE B4 0 224 115 3 1860 324 0 0 0 chr1 167168358 167168394 -30027038 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1860 288 176 0 19 chr1 167168475 167168527 -30026905 + B1_Mur1 SINE Alu 57 107 -42 3 1860 542 289 64 123 chr1 167168910 167169301 -30026131 + MTEa LTR MaLR 11 378 -1 3 1860 1199 119 11 6 chr1 167169797 167169975 -30025457 + B2_Mm1t SINE B2 1 179 -14 3 1860 327 125 13 34 chr1 167170007 167170074 -30025358 + B2_Mm2 SINE B2 46 116 -82 3 1860 1105 102 0 0 chr1 167170149 167170296 -30025136 - B1_Mus1 SINE Alu 0 148 2 3 1860 723 142 78 16 chr1 167170297 167170426 -30025006 + B1_Mur3 SINE Alu 11 147 -2 3 1860 447 19 0 0 chr1 167170439 167170491 -30024941 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1860 441 0 0 0 chr1 167170491 167170540 -30024892 + (GGGGA)n Simple_repeat Simple_repeat 5 53 0 3 1860 1248 91 0 0 chr1 167170540 167170716 -30024716 + (GAGAA)n Simple_repeat Simple_repeat 3 178 0 3 1860 1219 55 0 0 chr1 167170716 167170861 -30024571 + B1_Mus2 SINE Alu 3 147 0 3 1860 324 0 23 0 chr1 167170883 167170927 -30024505 + B3 SINE B2 1 45 -171 3 1860 219 88 0 0 chr1 167170928 167170962 -30024470 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1860 820 47 0 0 chr1 167170962 167171069 -30024363 - B1_Mus1 SINE Alu -41 107 1 3 1860 634 79 119 0 chr1 167171069 167171170 -30024262 + B2_Mm2 SINE B2 32 144 -51 3 1860 423 0 0 0 chr1 167171170 167171217 -30024215 + (AAATG)n Simple_repeat Simple_repeat 4 50 0 3 1860 195 69 0 0 chr1 167171697 167171726 -30023706 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 3 1860 405 0 0 0 chr1 167172145 167172190 -30023242 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1860 459 193 172 60 chr1 167172475 167172591 -30022841 + B1_Mur1 SINE Alu 2 130 -19 3 1860 1053 116 0 7 chr1 167172840 167172988 -30022444 - B1_Mus2 SINE Alu 0 147 1 3 1860 279 79 0 0 chr1 167173568 167173606 -30021826 + (CCGAA)n Simple_repeat Simple_repeat 4 41 0 3 1860 452 62 0 15 chr1 167173652 167173717 -30021715 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 3 1860 333 0 0 0 chr1 167174386 167174423 -30021009 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1860 1123 81 6 0 chr1 167174583 167174744 -30020688 + B2_Mm1t SINE B2 2 163 -30 3 1860 423 0 0 0 chr1 167174744 167174791 -30020641 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 1860 354 23 0 0 chr1 167174822 167174866 -30020566 + B2_Mm2 SINE B2 47 90 -105 3 1860 228 35 0 0 chr1 167174895 167174924 -30020508 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1860 1036 39 47 0 chr1 167174926 167175055 -30020377 - B1_Mus2 SINE Alu -11 136 2 3 1860 28 0 0 0 chr1 167175117 167175145 -30020287 + AT_rich Low_complexity Low_complexity 1 28 0 3 1860 3102 63 12 12 chr1 167176132 167176532 -30018900 + MTB LTR MaLR 1 400 0 3 1860 404 200 30 98 chr1 167176620 167176753 -30018679 - RSINE1 SINE B4 -5 160 37 3 1860 214 174 0 0 chr1 167177550 167177596 -30017836 + T-rich Low_complexity Low_complexity 1 46 0 3 1860 1178 56 0 0 chr1 167177598 167177741 -30017691 - B1_Mm SINE Alu -4 143 1 3 1860 740 107 0 0 chr1 167177914 167178026 -30017406 + B1_Mur3 SINE Alu 9 120 -29 3 1860 846 181 0 13 chr1 167178414 167178565 -30016867 - B1_Mur2 SINE Alu 0 149 1 3 1860 834 182 7 20 chr1 167178664 167178815 -30016617 + B1_Mur2 SINE Alu 1 149 0 3 1860 28 29 0 0 chr1 167179390 167179425 -30016007 + AT_rich Low_complexity Low_complexity 1 35 0 3 1860 255 236 110 65 chr1 167179475 167179629 -30015803 - RSINE1 SINE B4 0 165 5 3 1860 333 218 51 0 chr1 167179634 167179712 -30015720 - PB1D7 SINE Alu -5 115 34 3 1860 292 276 8 68 chr1 167180367 167180499 -30014933 - L1MA5A LINE L1 -355 5942 5819 3 1860 263 385 34 0 chr1 167180638 167180671 -30014761 + ID SINE ID 45 81 -143 3 1860 369 303 0 60 chr1 167180671 167180787 -30014645 + PB1D10 SINE Alu 1 109 -8 3 1860 630 235 20 0 chr1 167181136 167181285 -30014147 + B3 SINE B2 2 153 -63 3 1860 189 0 0 0 chr1 167181285 167181306 -30014126 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1860 27 0 0 0 chr1 167181306 167181333 -30014099 + AT_rich Low_complexity Low_complexity 1 27 0 3 1860 773 56 0 53 chr1 167181430 167181562 -30013870 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 3 1860 1287 102 17 6 chr1 167181579 167181757 -30013675 - B2_Mm2 SINE B2 -14 181 2 3 1860 588 198 9 0 chr1 167181895 167182006 -30013426 - PB1D9 SINE Alu 0 120 9 3 1860 212 113 75 0 chr1 167182112 167182165 -30013267 + T-rich Low_complexity Low_complexity 4 60 0 3 1860 438 28 56 0 chr1 167182911 167182982 -30012450 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 3 1860 332 286 19 28 chr1 167183342 167183450 -30011982 + RSINE1 SINE B4 42 148 -17 3 1860 609 228 0 0 chr1 167183556 167183679 -30011753 + RSINE1 SINE B4 3 125 -40 3 1860 21 0 0 0 chr1 167183705 167183726 -30011706 + AT_rich Low_complexity Low_complexity 1 21 0 3 1860 566 160 115 39 chr1 167184933 167185063 -30010369 + B3A SINE B2 8 147 -51 3 1860 591 15 0 0 chr1 167185080 167185148 -30010284 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1860 252 59 0 0 chr1 167185148 167185181 -30010251 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1860 568 94 113 78 chr1 167185537 167185652 -30009780 + MTC LTR MaLR 2 120 -301 3 1860 36164 88 11 14 chr1 167185658 167192028 -30003404 - L1Md_F2 LINE L1 -13 6569 238 3 1860 1488 143 4 1 chr1 167192028 167192266 -30003166 + MTC LTR MaLR 99 347 -74 3 1860 1239 61 0 0 chr1 167192266 167192413 -30003019 + B1_Mus2 SINE Alu 1 147 0 3 1860 1488 166 14 629 chr1 167192413 167192516 -30002916 + MTC LTR MaLR 331 407 0 3 1860 356 284 108 40 chr1 167193060 167193435 -30001997 - L1MC5 LINE L1 -883 7078 6697 3 1860 750 146 49 42 chr1 167193448 167193591 -30001841 - B1_Mus1 SINE Alu -1 147 4 3 1860 270 0 0 0 chr1 167194174 167194204 -30001228 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1860 877 110 0 151 chr1 167194204 167194376 -30001056 - B1_Mm SINE Alu 0 147 2 3 1860 860 89 52 15 chr1 167194462 167194598 -30000834 + B2_Mm2 SINE B2 8 148 -47 3 1860 459 0 0 0 chr1 167194617 167194668 -30000764 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 3 1860 248 351 133 17 chr1 167194700 167194993 -30000439 + MLT1E1A LTR MaLR 352 678 -2 3 1860 1784 152 43 35 chr1 167195016 167195385 -30000047 - ORR1C2 LTR MaLR 0 384 13 3 1860 1195 54 0 0 chr1 167195386 167195533 -29999899 - B1_Mm SINE Alu 0 147 1 3 1860 1447 43 27 5 chr1 167195677 167195832 -29999600 + B2_Mm1a SINE B2 2 156 -37 3 1860 207 0 0 0 chr1 167195832 167195855 -29999577 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1860 1447 43 27 5 chr1 167195855 167195886 -29999546 + B2_Mm1a SINE B2 157 192 -1 3 1860 225 0 0 0 chr1 167195894 167195919 -29999513 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1860 899 129 11 11 chr1 167195933 167196113 -29999319 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1860 575 262 14 14 chr1 167196122 167196320 -29999112 - B3A SINE B2 -14 202 11 4 1860 480 62 0 0 chr1 167197038 167197102 -29998330 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1860 401 168 0 9 chr1 167197105 167197197 -29998235 + GA-rich Low_complexity Low_complexity 2 93 0 4 1860 333 0 0 0 chr1 167197197 167197234 -29998198 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1860 401 168 0 9 chr1 167197234 167197249 -29998183 + polypurine Low_complexity Low_complexity 94 108 0 4 1860 4493 12 2 0 chr1 167197386 167197878 -29997554 - MT2_Mm LTR ERVL 0 493 1 4 1860 321 0 0 0 chr1 167197878 167197916 -29997516 - MERVL-int LTR ERVL 0 5485 5448 4 1860 362 167 46 35 chr1 167197916 167198003 -29997429 - ORR1A3-int LTR MaLR -1323 640 553 4 1860 48475 15 6 0 chr1 167198003 167203329 -29992103 - MERVL-int LTR ERVL -125 5360 1 4 1860 4493 12 2 0 chr1 167203329 167203821 -29991611 - MT2_Mm LTR ERVL 0 493 1 4 1860 1568 293 78 18 chr1 167203978 167204579 -29990853 + Lx8 LINE L1 6833 7469 -4 4 1860 22 0 0 0 chr1 167204589 167204611 -29990821 + AT_rich Low_complexity Low_complexity 1 22 0 4 1860 180 111 0 0 chr1 167204738 167204765 -29990667 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1860 544 149 43 0 chr1 167204766 167204860 -29990572 - B1_Mus1 SINE Alu -21 127 30 4 1860 887 162 168 0 chr1 167204901 167205080 -29990352 - B3 SINE B2 -4 212 4 4 1860 364 217 14 0 chr1 167205117 167205186 -29990246 - ID4 SINE ID -11 72 3 4 1860 1676 142 242 18 chr1 167205437 167205780 -29989652 + MTC LTR MaLR 2 421 0 4 1860 473 143 0 0 chr1 167205920 167205990 -29989442 - RMER12 LTR ERVK -63 1259 1190 4 1860 504 48 0 0 chr1 167205998 167206061 -29989371 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1860 351 0 0 0 chr1 167206062 167206101 -29989331 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1860 3031 138 214 14 chr1 167206101 167206562 -29988870 - RMER12 LTR ERVK -435 887 308 4 1860 1330 48 48 0 chr1 167206562 167206730 -29988702 + B2_Mm2 SINE B2 1 176 -19 4 1860 3031 138 214 14 chr1 167206730 167206907 -29988525 - RMER12 LTR ERVK -1015 307 122 4 1860 1189 98 0 6 chr1 167206907 167207081 -29988351 + B2_Mm2 SINE B2 1 173 -22 4 1860 387 91 0 0 chr1 167207113 167207168 -29988264 + B2_Mm2 SINE B2 47 101 -94 4 1860 551 172 145 8 chr1 167207219 167207336 -29988096 - RMER12 LTR ERVK -1189 133 1 4 1860 933 270 113 100 chr1 167207357 167208197 -29987235 - L1MB8 LINE L1 -28 6150 5300 4 1860 259 323 69 52 chr1 167208268 167208441 -29986991 - B4A SINE B4 -86 206 31 4 1860 627 164 26 8 chr1 167208463 167208580 -29986852 - B1_Mur2 SINE Alu -1 148 30 4 1860 460 258 52 19 chr1 167208765 167208919 -29986513 + RSINE1 SINE B4 3 161 -4 4 1860 633 174 0 0 chr1 167209028 167209143 -29986289 - B1_Mur1 SINE Alu -1 148 34 4 1860 812 148 42 7 chr1 167209482 167209625 -29985807 + B1_Mus1 SINE Alu 1 148 0 4 1860 549 68 0 0 chr1 167209729 167209803 -29985629 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1860 539 294 21 53 chr1 167210475 167210662 -29984770 - B3A SINE B2 -15 183 3 4 1860 248 291 37 25 chr1 167211530 167211611 -29983821 + L2b LINE L2 3293 3374 -1 4 1860 276 265 5 38 chr1 167211869 167212028 -29983404 + G-rich Low_complexity Low_complexity 1 153 0 4 1860 204 125 0 0 chr1 167213576 167213608 -29981824 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1860 445 188 39 79 chr1 167213608 167213735 -29981697 - B1_Mur2 SINE Alu 0 149 28 4 1860 417 177 6 64 chr1 167214620 167214777 -29980655 + CT-rich Low_complexity Low_complexity 1 148 0 4 1860 213 39 0 0 chr1 167214805 167214831 -29980601 + (CCCCCT)n Simple_repeat Simple_repeat 1 26 0 4 1860 706 157 0 53 chr1 167214833 167215021 -29980411 + CT-rich Low_complexity Low_complexity 2 179 0 4 1860 230 309 0 0 chr1 167215106 167215174 -29980258 + C-rich Low_complexity Low_complexity 1 68 0 4 1860 385 267 82 78 chr1 167215351 167215570 -29979862 - B4A SINE B4 -72 220 1 4 1860 573 140 11 11 chr1 167215843 167215937 -29979495 - PB1D9 SINE Alu -6 114 21 4 1860 268 179 0 173 chr1 167215875 167215956 -29979476 - MT2B LTR ERVL -364 237 171 4 1860 297 263 0 20 chr1 167215959 167216060 -29979372 - L1M5 LINE L1 -414 5826 5728 4 1860 428 177 0 20 chr1 167216147 167216245 -29979187 + (TCTG)n Simple_repeat Simple_repeat 2 97 0 4 1860 410 245 63 9 chr1 167216281 167216392 -29979040 - B1_Mur4 SINE Alu -27 123 7 4 1860 234 81 0 0 chr1 167216993 167217030 -29978402 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 4 1860 301 256 11 44 chr1 167217226 167217316 -29978116 + B3A SINE B2 8 94 -104 4 1860 444 82 0 0 chr1 167217371 167217432 -29978000 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1860 1789 113 13 27 chr1 167217468 167217769 -29977663 - ORR1A3 LTR MaLR -29 297 1 4 1860 22 0 0 0 chr1 167217813 167217835 -29977597 + GC_rich Low_complexity Low_complexity 1 22 0 4 1860 2028 98 42 0 chr1 167217897 167218203 -29977229 + ORR1A2 LTR MaLR 1 319 -8 4 1860 450 188 0 0 chr1 167218682 167218783 -29976649 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 1860 756 199 75 40 chr1 167218927 167219100 -29976332 - B3A SINE B2 -16 182 4 4 1860 1210 34 0 20 chr1 167219130 167219279 -29976153 + B1_Mm SINE Alu 2 147 0 4 1860 209 0 0 88 chr1 167219279 167219313 -29976119 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 4 1860 466 298 105 0 chr1 167219321 167219512 -29975920 - ID_B1 SINE B4 -13 211 1 4 1860 1535 67 0 5 chr1 167219685 167219879 -29975553 - B2_Mm2 SINE B2 0 195 3 4 1860 315 269 179 45 chr1 167220001 167220180 -29975252 - MER20 DNA MER1_type 0 219 17 4 1860 230 338 32 0 chr1 167220624 167220729 -29974703 - MIRb SINE MIR -45 223 108 4 1860 1206 54 0 0 chr1 167220872 167221020 -29974412 + B1_Mus1 SINE Alu 1 148 0 4 1860 243 122 0 0 chr1 167221020 167221069 -29974363 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1860 1037 35 7 14 chr1 167221493 167221637 -29973795 + B1_Mus1 SINE Alu 6 148 0 4 1860 232 342 0 18 chr1 167222001 167222114 -29973318 - Charlie23a DNA MER1_type -78 261 151 4 1860 1021 16 0 0 chr1 167222253 167222376 -29973056 + B1_Mus2 SINE Alu 20 142 -5 4 1860 243 0 0 0 chr1 167222379 167222406 -29973026 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1860 222 176 19 19 chr1 167222446 167222498 -29972934 + T-rich Low_complexity Low_complexity 3 54 0 4 1860 417 93 0 5 chr1 167222512 167222576 -29972856 - B2_Mm2 SINE B2 -107 109 48 4 1860 43 20 0 0 chr1 167222616 167222666 -29972766 + AT_rich Low_complexity Low_complexity 1 50 0 4 1860 1197 66 0 0 chr1 167222671 167222823 -29972609 - B2_Mm2 SINE B2 -43 152 1 4 1860 1071 240 93 119 chr1 167223254 167223409 -29972023 - MTD LTR MaLR 0 419 232 4 1860 429 20 0 0 chr1 167223409 167223459 -29971973 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1860 1071 240 93 119 chr1 167223459 167223733 -29971699 - MTD LTR MaLR -188 231 1 4 1860 1049 224 9 0 chr1 167223953 167224167 -29971265 + B3 SINE B2 1 216 0 4 1860 423 0 0 0 chr1 167224184 167224231 -29971201 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1860 306 197 15 29 chr1 167224865 167224933 -29970499 - B4A SINE B4 -13 279 213 4 1860 836 171 21 78 chr1 167224941 167225132 -29970300 + B2_Mm2 SINE B2 2 181 -14 4 1860 499 228 11 0 chr1 167225187 167225279 -29970153 - RSINE1 SINE B4 -72 93 1 4 1860 713 314 18 9 chr1 167225279 167225498 -29969934 - B4A SINE B4 -71 221 1 4 1860 327 275 166 35 chr1 167225516 167225624 -29969808 - L2 LINE L2 -724 2695 2571 4 1860 3295 114 6 2 chr1 167225624 167226097 -29969335 + MT2C_Mm LTR ERVL 1 475 0 4 1860 327 275 166 35 chr1 167226097 167226271 -29969161 - L2 LINE L2 -849 2570 2376 4 1860 287 256 101 13 chr1 167227179 167227258 -29968174 - B3A SINE B2 -112 86 1 4 1860 711 93 7 2 chr1 167227339 167227452 -29967980 - B1_Mus1 SINE Alu -2 118 3 4 1860 458 139 0 122 chr1 167227370 167227468 -29967964 - MT2B LTR ERVL -361 240 155 4 1860 636 302 16 37 chr1 167227486 167227730 -29967702 - L1MB3 LINE L1 -17 6166 5928 4 1860 1091 82 0 52 chr1 167227749 167227903 -29967529 + B1_Mm SINE Alu 2 147 0 4 1860 252 0 0 0 chr1 167227903 167227931 -29967501 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1860 243 211 39 0 chr1 167227931 167227983 -29967449 - PB1D10 SINE Alu -13 104 51 4 1860 494 303 72 83 chr1 167228006 167228163 -29967269 - L1MB2 LINE L1 -219 5952 5788 4 1860 483 142 255 81 chr1 167228163 167228324 -29967108 - B2_Mm2 SINE B2 -5 190 2 4 1860 494 303 72 83 chr1 167228324 167228461 -29966971 - L1MB2 LINE L1 -384 5787 5669 4 1860 503 232 20 40 chr1 167228461 167228609 -29966823 - RSINE1 SINE B4 -17 148 4 4 1860 494 303 72 83 chr1 167228609 167228745 -29966687 - L1MB2 LINE L1 -503 5668 5526 4 1860 609 277 28 0 chr1 167228787 167228928 -29966504 - B1_Mur1 SINE Alu -2 147 3 4 1860 350 265 8 17 chr1 167229058 167229177 -29966255 - L1MB2 LINE L1 -784 5356 5239 4 1860 266 47 47 0 chr1 167229261 167229304 -29966128 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 1860 288 0 0 0 chr1 167229305 167229337 -29966095 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1860 435 38 0 0 chr1 167229337 167229389 -29966043 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1860 390 295 101 12 chr1 167229805 167229979 -29965453 - MIR SINE MIR -16 252 67 4 1860 504 175 0 0 chr1 167230860 167230957 -29964475 + GA-rich Low_complexity Low_complexity 3 99 0 4 1860 1967 178 104 13 chr1 167231201 167231576 -29963856 - MTD LTR MaLR -8 411 3 4 1860 229 347 90 73 chr1 167231828 167232061 -29963371 - MLT1K LTR MaLR -3 592 356 4 1860 276 335 120 36 chr1 167232326 167232518 -29962914 - MIRb SINE MIR -34 234 27 4 1860 193 319 83 0 chr1 167233517 167233589 -29961843 - MIRm SINE MIR 0 276 199 4 1860 453 264 0 129 chr1 167233678 167233689 -29961743 - MT2B LTR ERVL -313 288 253 4 1860 766 217 0 0 chr1 167233689 167233818 -29961614 - B1_Mur1 SINE Alu -18 131 3 5 1860 453 264 0 129 chr1 167233818 167233848 -29961584 - MT2B LTR ERVL -313 252 141 4 1860 547 218 159 0 chr1 167233848 167234018 -29961414 + L1MA7 LINE L1 6075 6271 -20 5 1860 665 197 68 0 chr1 167234163 167234295 -29961137 - B1_Mur1 SINE Alu -6 143 3 5 1860 546 360 76 30 chr1 167234504 167234937 -29960495 + L3 LINE CR1 3618 4070 -419 5 1860 245 29 0 29 chr1 167234937 167234972 -29960460 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 1860 321 26 0 0 chr1 167235274 167235312 -29960120 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1860 214 265 20 0 chr1 167235851 167235900 -29959532 + ID4 SINE ID 14 63 -20 5 1860 1134 76 0 0 chr1 167235901 167236045 -29959387 + B1_Mus1 SINE Alu 2 145 -3 5 1860 724 263 89 5 chr1 167237890 167238081 -29957351 - B3 SINE B2 -6 210 4 5 1860 744 247 56 56 chr1 167238110 167238307 -29957125 - B3A SINE B2 0 198 2 5 1860 1187 195 0 19 chr1 167239682 167239896 -29955536 + B3 SINE B2 2 211 -5 5 1860 793 180 0 21 chr1 167240115 167240257 -29955175 + B1_Mur2 SINE Alu 1 139 -10 5 1860 339 186 37 42 chr1 167240264 167240366 -29955066 + MTD LTR MaLR 297 419 0 5 1860 213 39 0 0 chr1 167241438 167241464 -29953968 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1860 1200 55 7 0 chr1 167241464 167241610 -29953822 - B1_Mm SINE Alu 0 147 1 5 1860 239 135 19 0 chr1 167241923 167241932 -29953500 + (CA)n Simple_repeat Simple_repeat 2 10 0 5 1860 375 23 0 0 chr1 167241932 167241976 -29953456 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1860 239 135 19 0 chr1 167241976 167242018 -29953414 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1860 540 288 103 43 chr1 167242217 167242565 -29952867 - L1MC4a LINE L1 -332 7550 7182 5 1860 315 0 0 0 chr1 167244438 167244473 -29950959 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 5 1860 236 282 0 14 chr1 167245265 167245337 -29950095 - MLT1A1 LTR MaLR 0 408 338 5 1860 242 241 0 36 chr1 167245389 167245402 -29950030 - B3A SINE B2 -144 54 42 5 1860 1128 75 129 12 chr1 167245402 167245565 -29949867 - B2_Mm2 SINE B2 -12 183 2 5 1860 242 241 0 36 chr1 167245565 167245607 -29949825 - B3A SINE B2 -157 41 1 5 1860 256 218 65 161 chr1 167245630 167245684 -29949748 - MLT1A1 LTR MaLR -322 86 46 5 1860 634 108 362 14 chr1 167245684 167245825 -29949607 - B2_Mm2 SINE B2 -4 191 2 5 1860 256 218 65 161 chr1 167245825 167245863 -29949569 - MLT1A1 LTR MaLR -363 45 3 5 1860 703 154 16 41 chr1 167245952 167246074 -29949358 - B1_Mur3 SINE Alu -28 121 3 5 1860 391 256 55 116 chr1 167246074 167246105 -29949327 - MT2B LTR ERVL -452 149 128 5 1860 406 204 0 18 chr1 167246224 167246334 -29949098 + CT-rich Low_complexity Low_complexity 2 109 0 5 1860 909 255 0 27 chr1 167246339 167246561 -29948871 - B3 SINE B2 0 216 1 5 1860 230 305 105 38 chr1 167247640 167247773 -29947659 + MIRc SINE MIR 108 249 -19 5 1861 786 175 0 0 chr1 167249185 167249362 -29946070 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1861 226 169 0 30 chr1 167249375 167249442 -29945990 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1861 492 229 0 0 chr1 167249467 167249547 -29945885 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1861 3022 79 13 3 chr1 167249547 167249939 -29945493 - MTA_Mm LTR MaLR 0 396 1 5 1861 492 229 0 0 chr1 167249939 167250037 -29945395 + (CA)n Simple_repeat Simple_repeat 2 99 0 5 1861 183 129 0 0 chr1 167250077 167250108 -29945324 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1861 239 194 14 43 chr1 167250108 167250178 -29945254 + RLTR40 LTR ERVK 563 630 -187 5 1861 263 299 101 62 chr1 167252763 167252941 -29942491 + MIR3 SINE MIR 17 201 -7 5 1861 234 0 0 0 chr1 167254692 167254718 -29940714 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1861 187 288 17 17 chr1 167255254 167255314 -29940118 + MIR SINE MIR 45 104 -158 5 1861 534 198 0 0 chr1 167257175 167257266 -29938166 - B1_Mur3 SINE Alu -58 91 1 5 1861 337 306 55 9 chr1 167257176 167257285 -29938147 - B4 SINE B4 -113 179 66 5 1861 420 71 0 0 chr1 167258531 167258587 -29936845 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1861 354 45 0 0 chr1 167258587 167258630 -29936802 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1861 209 357 35 0 chr1 167259011 167259182 -29936250 + (TACGG)n Simple_repeat Simple_repeat 3 179 0 5 1861 214 309 27 0 chr1 167259160 167259270 -29936162 + (CAGTA)n Simple_repeat Simple_repeat 5 117 0 5 1861 243 0 0 0 chr1 167259793 167259820 -29935612 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1861 216 0 0 0 chr1 167259946 167259970 -29935462 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1861 751 168 87 7 chr1 167260294 167260432 -29935000 - B1_Mur1 SINE Alu 0 149 1 5 1861 538 245 162 26 chr1 167260451 167260659 -29934773 - B3A SINE B2 0 216 1 5 1861 377 234 42 11 chr1 167260868 167260963 -29934469 + RMER30 DNA MER1_type 7 104 -98 5 1861 390 310 16 87 chr1 167260973 167261100 -29934332 + RMER30 DNA MER1_type 84 201 -1 5 1861 194 393 24 0 chr1 167261139 167261223 -29934209 - L2b LINE L2 -23 3352 3267 5 1861 674 247 86 0 chr1 167262095 167262257 -29933175 + B3 SINE B2 28 203 -13 5 1861 197 33 0 32 chr1 167262259 167262290 -29933142 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 5 1861 741 154 46 0 chr1 167262331 167262461 -29932971 + B1_Mur3 SINE Alu 12 147 -2 5 1861 808 222 132 0 chr1 167262689 167262878 -29932554 + B3 SINE B2 2 215 -1 5 1861 455 219 82 45 chr1 167263017 167263151 -29932281 - ID_B1 SINE B4 0 224 86 5 1861 371 231 96 58 chr1 167263850 167264006 -29931426 + L1MA4 LINE L1 4282 4443 -1700 5 1861 1254 48 0 0 chr1 167264009 167264156 -29931276 + B1_Mus1 SINE Alu 2 148 0 5 1861 225 0 0 0 chr1 167264156 167264181 -29931251 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1861 1158 115 43 11 chr1 167264238 167264423 -29931009 + B2_Mm2 SINE B2 2 192 -3 5 1861 533 278 149 14 chr1 167264439 167264911 -29930521 + L1MA4 LINE L1 4865 5420 -877 5 1861 481 229 112 3 chr1 167264915 167265046 -29930386 + B1_Mur1 SINE Alu 7 147 -2 5 1861 359 238 0 0 chr1 167265050 167265134 -29930298 + L1MA4 LINE L1 5424 5507 -793 5 1861 948 69 1 16 chr1 167265134 167265263 -29930169 + B1_Mus2 SINE Alu 9 138 -10 5 1861 288 0 0 0 chr1 167265263 167265295 -29930137 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1861 948 65 0 16 chr1 167265295 167265306 -29930126 + B1_Mus2 SINE Alu 138 147 0 5 1861 619 293 95 31 chr1 167265311 167265670 -29929762 + L1MA4 LINE L1 5536 5917 -383 5 1861 330 26 0 0 chr1 167265889 167265928 -29929504 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1861 304 216 107 58 chr1 167266318 167266421 -29929011 - PB1D10 SINE Alu 0 117 10 5 1861 640 161 66 25 chr1 167266643 167266764 -29928668 - B1_Mur1 SINE Alu -6 143 18 5 1861 395 222 46 106 chr1 167266764 167266794 -29928638 - ID_B1 SINE B4 -6 218 77 5 1861 830 209 0 26 chr1 167267071 167267223 -29928209 - B1_Mur2 SINE Alu 0 149 2 5 1861 362 237 13 13 chr1 167267238 167267315 -29928117 - B3A SINE B2 -92 106 30 5 1861 812 144 0 77 chr1 167267315 167267458 -29927974 + B1_Mur3 SINE Alu 13 144 -5 5 1861 251 209 0 0 chr1 167267458 167267501 -29927931 - B2_Mm2 SINE B2 -150 45 3 5 1861 26 50 0 0 chr1 167267501 167267541 -29927891 + AT_rich Low_complexity Low_complexity 1 40 0 5 1861 689 267 82 23 chr1 167267920 167268177 -29927255 - Lx8 LINE L1 -55 7418 7147 5 1861 21 36 0 0 chr1 167268547 167268575 -29926857 + AT_rich Low_complexity Low_complexity 1 28 0 5 1861 249 290 14 0 chr1 167269165 167269234 -29926198 - ID4_ SINE ID -10 73 4 5 1861 190 360 67 0 chr1 167269554 167269629 -29925803 - MIR3 SINE MIR -43 165 86 5 1861 316 161 32 147 chr1 167269733 167269828 -29925604 + L1MDa LINE L1 2403 2486 -4147 5 1861 348 289 70 9 chr1 167270509 167270624 -29924808 + ID_B1 SINE B4 103 224 0 5 1861 181 0 69 0 chr1 167270624 167270653 -29924779 + (CAAAC)n Simple_repeat Simple_repeat 1 31 0 5 1861 231 36 0 0 chr1 167270752 167270780 -29924652 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 5 1861 861 162 7 0 chr1 167271606 167271742 -29923690 + B1_Mur3 SINE Alu 13 149 0 5 1861 374 257 71 91 chr1 167271607 167271761 -29923671 + B4A SINE B4 99 249 -43 5 1861 26 30 0 0 chr1 167271905 167271938 -29923494 + AT_rich Low_complexity Low_complexity 1 33 0 5 1861 695 292 32 9 chr1 167272346 167272567 -29922865 - B4A SINE B4 -64 228 3 5 1861 231 280 26 39 chr1 167272721 167272799 -29922633 + AluF_3 SINE Alu 140 205 -106 5 1861 195 42 0 0 chr1 167275219 167275243 -29920189 + (CAAAG)n Simple_repeat Simple_repeat 3 26 0 5 1861 450 214 28 46 chr1 167275271 167275379 -29920053 + PB1D9 SINE Alu 10 115 -5 5 1861 401 248 19 29 chr1 167275601 167275705 -29919727 + MER58D DNA MER1_type 284 386 0 5 1861 441 200 140 0 chr1 167275890 167275990 -29919442 + ID_B1 SINE B4 106 219 -5 5 1861 489 221 21 0 chr1 167276661 167276756 -29918676 + B1F SINE Alu 2 98 -51 5 1861 4507 53 48 2 chr1 167276766 167277333 -29918099 + L1Md_F2 LINE L1 5988 6580 -2 5 1861 34 24 0 0 chr1 167277430 167277471 -29917961 + AT_rich Low_complexity Low_complexity 1 41 0 5 1861 3505 53 2 44 chr1 167277477 167277933 -29917499 + L1_Mus2 LINE L1 6110 6546 -20 5 1861 231 36 0 0 chr1 167277935 167277963 -29917469 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 5 1861 806 102 113 21 chr1 167277963 167278104 -29917328 - B2_Mm2 SINE B2 -34 161 8 5 1861 363 23 0 0 chr1 167278111 167278155 -29917277 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1861 1285 62 28 0 chr1 167278221 167278398 -29917034 + L1_Mus1 LINE L1 6385 6566 -1 5 1861 414 0 0 0 chr1 167278788 167278834 -29916598 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1861 296 239 283 0 chr1 167278846 167278959 -29916473 + B1F1 SINE Alu 5 149 0 5 1861 285 318 135 9 chr1 167279206 167279317 -29916115 - PB1 SINE Alu -2 125 1 5 1861 479 258 23 30 chr1 167279606 167279738 -29915694 - B1F SINE Alu 0 149 19 5 1861 270 0 0 0 chr1 167279873 167279903 -29915529 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1861 241 315 120 0 chr1 167280107 167280215 -29915217 - PB1 SINE Alu -4 123 3 5 1861 668 162 6 165 chr1 167280503 167280673 -29914759 + B1_Mur1 SINE Alu 6 148 -1 6 1861 524 223 7 44 chr1 167281812 167281948 -29913484 + RSINE1 SINE B4 2 132 -33 6 1861 279 0 0 0 chr1 167282718 167282749 -29912683 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1861 534 291 19 25 chr1 167282972 167283134 -29912298 + RSINE1 SINE B4 3 163 -2 6 1861 968 53 106 0 chr1 167283172 167283304 -29912128 + B1_Mm SINE Alu 2 147 0 6 1861 261 0 0 0 chr1 167283475 167283504 -29911928 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 6 1861 322 352 62 0 chr1 167283504 167283649 -29911783 - HAL1-3A_ME LINE L1 -419 2439 2286 6 1861 341 287 194 0 chr1 167283641 167283770 -29911662 - HAL1-3A_ME LINE L1 -420 2438 2285 6 1861 245 53 0 50 chr1 167283774 167283814 -29911618 + (TTCCC)n Simple_repeat Simple_repeat 2 39 0 6 1861 883 296 0 0 chr1 167283843 167284032 -29911400 - B3 SINE B2 -27 189 1 6 1861 197 372 39 70 chr1 167284655 167284811 -29910621 - MIRb SINE MIR -5 263 113 6 1861 274 342 106 13 chr1 167285287 167285438 -29909994 + L2a LINE L2 2641 2805 -614 6 1861 497 278 28 70 chr1 167285649 167285862 -29909570 + L2a LINE L2 3209 3412 -14 6 1861 215 184 51 69 chr1 167285953 167286128 -29909304 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 6 1861 475 278 108 83 chr1 167287110 167287388 -29908044 - B4A SINE B4 -3 289 5 6 1861 246 32 0 0 chr1 167288116 167288147 -29907285 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1861 617 238 14 0 chr1 167288306 167288449 -29906983 + B1F SINE Alu 5 149 0 6 1861 465 311 0 36 chr1 167288459 167288596 -29906836 + B1_Mur2 SINE Alu 10 141 -8 6 1861 459 0 0 0 chr1 167288841 167288892 -29906540 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1861 721 176 40 0 chr1 167289246 167289371 -29906061 + B1_Mur2 SINE Alu 6 135 -14 6 1861 411 336 0 25 chr1 167289397 167289519 -29905913 + B3A SINE B2 25 143 -55 6 1861 603 212 129 64 chr1 167290092 167290263 -29905169 + B3 SINE B2 1 182 -34 6 1861 23 33 0 0 chr1 167290323 167290353 -29905079 + AT_rich Low_complexity Low_complexity 1 30 0 6 1861 1306 97 11 5 chr1 167290365 167290552 -29904880 + B2_Mm2 SINE B2 1 188 -7 6 1861 228 234 123 49 chr1 167290974 167291055 -29904377 + B1F2 SINE Alu 1 87 -62 6 1861 21 0 0 0 chr1 167291121 167291142 -29904290 + AT_rich Low_complexity Low_complexity 1 21 0 6 1861 1148 64 0 0 chr1 167291256 167291396 -29904036 + B1_Mus1 SINE Alu 1 140 -8 6 1861 266 0 29 0 chr1 167291396 167291430 -29904002 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1861 356 169 14 0 chr1 167291781 167291852 -29903580 + B1_Mus2 SINE Alu 5 76 -71 6 1861 267 31 0 0 chr1 167291864 167291896 -29903536 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1861 661 252 0 22 chr1 167292103 167292241 -29903191 + B1_Mur1 SINE Alu 10 144 -5 6 1861 232 165 55 0 chr1 167292244 167292335 -29903097 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1861 27 49 0 0 chr1 167292607 167292648 -29902784 + AT_rich Low_complexity Low_complexity 1 41 0 6 1861 782 189 67 17 chr1 167292819 167292997 -29902435 + B2_Mm2 SINE B2 2 188 -7 6 1861 240 294 126 10 chr1 167293032 167293135 -29902297 + PB1 SINE Alu 1 115 -12 6 1861 25 31 0 0 chr1 167293343 167293375 -29902057 + AT_rich Low_complexity Low_complexity 1 32 0 6 1861 200 176 0 0 chr1 167293677 167293711 -29901721 + CT-rich Low_complexity Low_complexity 1 34 0 6 1861 579 207 0 18 chr1 167293721 167293834 -29901598 - PB1D9 SINE Alu -8 112 2 6 1861 653 185 14 58 chr1 167294359 167294497 -29900935 + B1_Mur1 SINE Alu 3 134 -15 6 1861 273 29 0 0 chr1 167294502 167294536 -29900896 + (CAA)n Simple_repeat Simple_repeat 1 34 0 6 1861 301 342 41 35 chr1 167294616 167294813 -29900619 - RLTR21 LTR ERVK -300 1272 1075 6 1861 396 0 0 0 chr1 167295132 167295176 -29900256 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1861 675 179 105 44 chr1 167295295 167295476 -29899956 - B2_Mm2 SINE B2 -1 194 3 6 1861 249 298 31 21 chr1 167295735 167295831 -29899601 + L2 LINE L2 2506 2602 -817 6 1861 354 279 0 0 chr1 167296093 167296161 -29899271 - PB1D7 SINE Alu -50 70 3 6 1861 184 0 30 61 chr1 167296161 167296194 -29899238 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 1861 580 235 45 25 chr1 167296471 167296628 -29898804 + RSINE1 SINE B4 5 164 -1 6 1861 408 163 31 61 chr1 167297070 167297168 -29898264 + PB1D10 SINE Alu 11 105 -12 6 1861 450 0 0 0 chr1 167297967 167298017 -29897415 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 6 1861 439 285 45 26 chr1 167299861 167300016 -29895416 - RSINE1 SINE B4 -4 161 4 6 1861 27 0 0 0 chr1 167300363 167300390 -29895042 + AT_rich Low_complexity Low_complexity 1 27 0 6 1861 308 318 170 6 chr1 167300610 167300782 -29894650 + MIR SINE MIR 23 222 -46 6 1861 236 314 87 19 chr1 167302026 167302041 -29893391 + ID SINE ID 66 87 -137 6 1861 361 295 66 9 chr1 167302041 167302147 -29893285 + PB1D10 SINE Alu 1 112 -5 6 1861 268 239 82 93 chr1 167302169 167302266 -29893166 + PB1D9 SINE Alu 17 112 -8 6 1861 723 223 24 72 chr1 167302407 167302615 -29892817 + B3A SINE B2 1 198 0 6 1861 1191 61 0 0 chr1 167302834 167302981 -29892451 + B1_Mus2 SINE Alu 1 147 0 6 1861 362 256 0 12 chr1 167303100 167303183 -29892249 - ID4 SINE ID 0 83 2 6 1861 27 29 0 0 chr1 167304635 167304669 -29890763 + AT_rich Low_complexity Low_complexity 1 34 0 6 1861 24 0 0 0 chr1 167304802 167304826 -29890606 + AT_rich Low_complexity Low_complexity 1 24 0 6 1861 206 175 81 81 chr1 167305126 167305188 -29890244 - L2a LINE L2 -78 3348 3287 6 1861 5002 114 8 6 chr1 167305338 167306116 -29889316 - L1_Mm LINE L1 -1822 4061 3283 6 1861 4066 109 37 3 chr1 167306118 167306676 -29888756 + L1_Mur2 LINE L1 4052 4626 -1251 6 1861 291 28 0 0 chr1 167306676 167306712 -29888720 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1861 4066 109 37 3 chr1 167306712 167306798 -29888634 + L1_Mur2 LINE L1 4627 4718 -1159 6 1861 2854 89 19 95 chr1 167306801 167307275 -29888157 + L1_Mm LINE L1 5360 5797 -86 6 1861 4140 40 10 2 chr1 167307275 167307781 -29887651 + L1Md_F2 LINE L1 6073 6582 0 6 1861 242 139 0 111 chr1 167307802 167307836 -29887596 + A-rich Low_complexity Low_complexity 1 31 0 6 1861 1093 74 0 0 chr1 167307836 167307971 -29887461 + B1_Mus1 SINE Alu 2 136 -12 6 1861 277 0 18 70 chr1 167307973 167308030 -29887402 + (CAA)n Simple_repeat Simple_repeat 1 54 0 6 1861 5479 102 34 14 chr1 167308030 167308899 -29886533 + L1_Mus4 LINE L1 5791 6636 0 6 1861 180 179 50 25 chr1 167309206 167309246 -29886186 - L2a LINE L2 -1164 2255 2215 6 1861 207 0 0 0 chr1 167309247 167309270 -29886162 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1861 205 369 98 33 chr1 167309288 167309737 -29885695 - L2a LINE L2 -1270 2149 1672 6 1861 6000 192 61 62 chr1 167309984 167311420 -29884012 + Lx7 LINE L1 5826 7259 -437 6 1861 1324 67 56 0 chr1 167311474 167311652 -29883780 - B2_Mm1t SINE B2 -5 188 1 6 1861 434 236 100 0 chr1 167311654 167311764 -29883668 + Lx7 LINE L1 7247 7367 -329 6 1861 263 184 0 0 chr1 167311796 167311845 -29883587 + Lx7 LINE L1 7357 7405 -291 6 1861 345 137 275 95 chr1 167311847 167311978 -29883454 - B2_Mm2 SINE B2 -9 184 29 6 1861 1251 90 22 6 chr1 167311988 167312166 -29883266 - B2_Mm2 SINE B2 -14 181 1 6 1861 1296 181 49 52 chr1 167312166 167312491 -29882941 + Lx7 LINE L1 7146 7679 -17 6 1861 31 44 0 0 chr1 167313895 167313940 -29881492 + AT_rich Low_complexity Low_complexity 1 45 0 6 1861 351 277 75 0 chr1 167314433 167314527 -29880905 + PB1D10 SINE Alu 9 109 -8 6 1861 180 0 0 0 chr1 167315070 167315090 -29880342 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1861 230 346 110 0 chr1 167315308 167315435 -29879997 - L2 LINE L2 -740 2679 2539 6 1861 256 240 0 39 chr1 167315465 167315517 -29879915 + RSINE1 SINE B4 3 52 -113 6 1861 183 129 0 0 chr1 167315520 167315551 -29879881 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1861 512 235 128 19 chr1 167317475 167317631 -29877801 + B3 SINE B2 43 215 -1 6 1861 182 281 53 0 chr1 167318971 167319028 -29876404 + L3 LINE CR1 1691 1750 -2739 6 1861 639 264 15 82 chr1 167319094 167319300 -29876132 - B3A SINE B2 -6 192 1 6 1861 2077 165 68 2 chr1 167319386 167319781 -29875651 + MTC LTR MaLR 1 421 0 6 1861 301 316 155 63 chr1 167319887 167320029 -29875403 + RSINE1 SINE B4 3 157 -8 6 1861 21 57 0 0 chr1 167320044 167320079 -29875353 + AT_rich Low_complexity Low_complexity 1 35 0 6 1861 741 197 28 21 chr1 167320277 167320422 -29875010 + B1_Mus2 SINE Alu 1 146 -1 6 1861 641 201 67 37 chr1 167321529 167321663 -29873769 - B1F SINE Alu -1 148 11 6 1861 236 122 0 39 chr1 167321813 167321864 -29873568 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 6 1861 360 241 73 33 chr1 167321865 167322015 -29873417 + L1MC LINE L1 5587 5742 -382 6 1861 910 205 44 20 chr1 167322015 167322219 -29873213 + B3 SINE B2 2 210 -6 6 1861 3013 45 115 2 chr1 167322421 167322822 -29872610 + L1_Mus2 LINE L1 6121 6566 0 6 1861 231 267 93 0 chr1 167322890 167322965 -29872467 - ID4_ SINE ID 0 83 2 6 1861 248 337 121 22 chr1 167323184 167323275 -29872157 + PB1D10 SINE Alu 1 100 -17 6 1861 223 283 197 74 chr1 167323275 167323304 -29872128 + ID_B1 SINE B4 82 216 -8 6 1861 183 156 0 0 chr1 167323310 167323342 -29872090 + GA-rich Low_complexity Low_complexity 3 34 0 6 1861 1434 97 0 0 chr1 167323562 167323757 -29871675 - B2_Mm2 SINE B2 0 195 1 6 1861 222 136 0 0 chr1 167323948 167323992 -29871440 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1861 404 111 0 14 chr1 167323991 167324064 -29871368 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1861 431 252 134 24 chr1 167324066 167324291 -29871141 + Lx6 LINE L1 5606 5847 0 6 1861 1694 200 88 5 chr1 167325075 167325462 -29869970 - MTD LTR MaLR 0 419 1 6 1861 386 303 53 94 chr1 167325524 167325695 -29869737 + RSINE1 SINE B4 2 165 0 7 1861 414 270 0 53 chr1 167325785 167325879 -29869553 + B4A SINE B4 74 162 -130 7 1861 593 268 138 65 chr1 167326612 167326983 -29868449 + RMER10A LTR ERVL 18 415 -27 7 1861 245 213 164 0 chr1 167327066 167327127 -29868305 + ID4_ SINE ID 4 74 -9 7 1861 6359 11 0 0 chr1 167327192 167327924 -29867508 - L1_Mm LINE L1 -1565 4318 3587 7 1861 8096 29 0 0 chr1 167327924 167328869 -29866563 + L1Md_T LINE L1 5637 6581 -1 7 1861 265 221 25 25 chr1 167328883 167328962 -29866470 + B1_Mus1 SINE Alu 2 80 -68 7 1861 455 257 0 10 chr1 167328961 167329063 -29866369 + B3 SINE B2 112 212 -4 7 1861 262 220 208 10 chr1 167329642 167329743 -29865689 - ID_B1 SINE B4 -2 222 102 7 1861 3282 33 5 5 chr1 167330140 167330536 -29864896 - MTA_Mm LTR MaLR 0 396 1 7 1861 1089 213 226 0 chr1 167330594 167330913 -29864519 - MTC LTR MaLR -15 406 16 7 1861 1118 82 0 0 chr1 167331015 167331162 -29864270 - B1_Mus2 SINE Alu 0 147 1 7 1861 530 238 150 8 chr1 167331578 167331705 -29863727 - B3 SINE B2 -6 210 66 7 1861 213 200 0 0 chr1 167332174 167332209 -29863223 + (CTCG)n Simple_repeat Simple_repeat 2 36 0 7 1861 292 269 15 0 chr1 167332513 167332580 -29862852 - ID4_ SINE ID -6 77 10 7 1861 220 317 134 0 chr1 167332601 167332683 -29862749 - ID_B1 SINE B4 -51 173 81 7 1861 712 278 182 21 chr1 167332942 167333347 -29862085 + Lx8 LINE L1 7004 7473 0 7 1861 1134 36 0 0 chr1 167333955 167334093 -29861339 - B1_Mus1 SINE Alu -1 147 10 7 1861 303 267 15 8 chr1 167333994 167334126 -29861306 - ORR1B1-int LTR MaLR -755 754 622 7 1861 412 205 201 144 chr1 167334116 167334310 -29861122 - B3 SINE B2 -6 210 6 7 1861 461 302 39 90 chr1 167334340 167334518 -29860914 - B3A SINE B2 -29 169 1 7 1861 548 249 107 5 chr1 167334540 167334691 -29860741 - ID_B1 SINE B4 -40 252 87 7 1861 32459 35 12 11 chr1 167334755 167339757 -29855675 + L1Md_Gf LINE L1 1 4941 -945 7 1861 228 183 46 77 chr1 167339757 167339822 -29855610 - RMER20A LTR ERVK -268 248 186 7 1861 32459 35 12 11 chr1 167339822 167340476 -29854956 + L1Md_Gf LINE L1 4942 5589 -297 7 1861 9021 6 0 0 chr1 167340476 167341472 -29853960 + L1Md_T LINE L1 5587 6582 0 7 1861 23 54 0 0 chr1 167341472 167341509 -29853923 + AT_rich Low_complexity Low_complexity 1 37 0 7 1861 267 257 122 0 chr1 167342553 167342627 -29852805 - ID4 SINE ID 0 83 1 7 1861 337 209 30 0 chr1 167342660 167342727 -29852705 - HAL1-3A_ME LINE L1 -813 2045 1977 7 1861 28 29 0 0 chr1 167343079 167343114 -29852318 + AT_rich Low_complexity Low_complexity 1 35 0 7 1861 29571 77 19 35 chr1 167343233 167348507 -29846925 + L1Md_F2 LINE L1 392 5585 -298 7 1861 7232 60 38 8 chr1 167348508 167349475 -29845957 + L1Md_F2 LINE L1 5587 6582 0 7 1861 725 183 76 0 chr1 167349487 167349618 -29845814 + B1_Mus1 SINE Alu 1 141 -7 7 1861 206 235 39 0 chr1 167349758 167349809 -29845623 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 7 1861 907 287 97 0 chr1 167349829 167350066 -29845366 - B4A SINE B4 -22 270 11 7 1861 643 355 62 30 chr1 167350575 167350947 -29844485 + MLT1D LTR MaLR 88 471 -34 7 1861 916 136 107 0 chr1 167351297 167351466 -29843966 - B2_Mm2 SINE B2 -7 188 2 7 1861 230 198 44 44 chr1 167351673 167351763 -29843669 + L1M4 LINE L1 883 972 -5570 7 1861 613 244 18 3 chr1 167351788 167351965 -29843467 - B3 SINE B2 -15 183 1 7 1861 350 283 16 96 chr1 167352004 167352019 -29843413 + MT2B LTR ERVL 155 159 -442 7 1861 622 254 25 0 chr1 167352019 167352141 -29843291 + B1_Mur1 SINE Alu 3 127 -22 7 1861 424 303 37 15 chr1 167352156 167352290 -29843142 + ID_B1 SINE B4 81 217 -7 7 1861 872 182 0 0 chr1 167352354 167352502 -29842930 + B1_Mur1 SINE Alu 2 149 0 7 1861 22 0 0 0 chr1 167352697 167352719 -29842713 + AT_rich Low_complexity Low_complexity 1 22 0 7 1861 21 0 0 0 chr1 167353341 167353362 -29842070 + AT_rich Low_complexity Low_complexity 1 21 0 7 1861 310 259 98 12 chr1 167353630 167353712 -29841720 - B1F2 SINE Alu -51 98 10 7 1861 1221 48 7 0 chr1 167353838 167353984 -29841448 + B1_Mus2 SINE Alu 1 147 0 7 1861 904 156 7 0 chr1 167354099 167354240 -29841192 + B1_Mur2 SINE Alu 1 142 -7 7 1861 648 269 102 32 chr1 167354865 167355296 -29840136 + L1MCa LINE L1 922 1382 -5126 7 1861 1578 258 55 57 chr1 167355312 167355518 -29839914 + RMER5 LTR ERV1 8 218 -316 7 1861 1331 62 23 6 chr1 167355518 167355695 -29839737 + B2_Mm2 SINE B2 2 181 -14 7 1861 1578 258 55 57 chr1 167355695 167356011 -29839421 + RMER5 LTR ERV1 219 529 -5 7 1861 932 193 105 15 chr1 167356030 167356362 -29839070 + L1MCa LINE L1 1420 1781 -4727 7 1861 457 257 70 49 chr1 167356369 167356512 -29838920 + B3 SINE B2 3 148 -68 7 1861 722 114 87 43 chr1 167356581 167356719 -29838713 + B1_Mus1 SINE Alu 5 148 0 7 1861 324 216 283 5 chr1 167356761 167356980 -29838452 + L1ME1 LINE L1 5601 5880 -299 7 1861 248 338 0 27 chr1 167357029 167357102 -29838330 + ID2 SINE ID 2 72 -11 7 1861 251 238 51 58 chr1 167357500 167357638 -29837794 + HAL1 LINE L1 1498 1634 -873 7 1861 288 263 157 9 chr1 167358189 167358304 -29837128 + B4A SINE B4 83 214 -78 7 1861 285 267 35 53 chr1 167358213 167358383 -29837049 + RMER17A2 LTR ERVK 223 389 -517 7 1861 190 344 189 18 chr1 167358459 167358681 -29836751 - L2 LINE L2 -1212 2207 1948 7 1861 485 271 42 0 chr1 167358852 167358970 -29836462 - ID_B1 SINE B4 -26 198 76 7 1861 570 67 0 0 chr1 167359027 167359102 -29836330 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1861 599 276 8 0 chr1 167359130 167359257 -29836175 - B1F1 SINE Alu -12 137 10 7 1861 348 267 27 0 chr1 167359938 167360013 -29835419 - B3A SINE B2 -119 79 3 7 1861 884 159 0 14 chr1 167360430 167360570 -29834862 - B1_Mus2 SINE Alu -1 146 9 7 1861 405 0 0 0 chr1 167360773 167360818 -29834614 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1861 222 118 0 0 chr1 167361024 167361058 -29834374 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 7 1861 735 168 92 0 chr1 167361282 167361413 -29834019 + B1_Mur4 SINE Alu 2 144 -6 7 1861 442 127 0 44 chr1 167361416 167361507 -29833925 + GA-rich Low_complexity Low_complexity 4 90 0 7 1861 26 30 0 0 chr1 167361865 167361898 -29833534 + AT_rich Low_complexity Low_complexity 1 33 0 7 1861 2647 166 29 20 chr1 167362555 167363042 -29832390 + RLTR17 LTR ERVK 202 692 0 7 1861 1294 234 47 72 chr1 167363042 167363531 -29831901 + RMER3D-int LTR ERVK 1 477 -2365 7 1861 523 179 28 0 chr1 167363661 167363767 -29831665 + RMER3D-int LTR ERVK 489 597 -2245 7 1861 659 163 90 28 chr1 167363816 167363993 -29831439 + RMER3D-int LTR ERVK 1015 1202 -1640 7 1861 3000 180 37 43 chr1 167363993 167364639 -29830793 - RLTR26 LTR ERVK 0 642 1 7 1861 5767 184 63 59 chr1 167364639 167365228 -29830204 + RMER3D-int LTR ERVK 1197 1768 -1074 7 1861 1200 55 0 0 chr1 167365228 167365374 -29830058 - B1_Mus2 SINE Alu 0 147 2 7 1861 5767 184 63 59 chr1 167365374 167366423 -29829009 + RMER3D-int LTR ERVK 1769 2842 0 7 1861 322 45 0 22 chr1 167366446 167366492 -29828940 + RLTR17 LTR ERVK 98 142 -550 7 1861 300 231 0 0 chr1 167366590 167366655 -29828777 - ID4 SINE ID -18 65 1 7 1861 393 330 32 63 chr1 167366662 167366896 -29828536 - LTR40b LTR ERVL -95 424 190 7 1861 1062 270 50 4 chr1 167366887 167367147 -29828285 + MTE2b LTR MaLR 108 379 0 7 1861 631 379 99 16 chr1 167367310 167367693 -29827739 + MLT2F LTR ERVL 25 439 -224 7 1861 240 250 25 32 chr1 167367754 167367844 -29827588 + MLT2F LTR ERVL 443 496 -167 7 1861 884 260 84 114 chr1 167367871 167368335 -29827097 + RLTR12B LTR ERVK 47 496 -32 7 1861 332 277 29 29 chr1 167368404 167368508 -29826924 + MLT2F LTR ERVL 486 589 -74 7 1861 834 246 119 22 chr1 167368539 167368817 -29826615 + MTD LTR MaLR 1 305 -114 7 1861 240 256 58 0 chr1 167369438 167369524 -29825908 + L1MD LINE L1 4067 4157 -1989 7 1861 977 187 67 5 chr1 167369582 167369776 -29825656 - B3 SINE B2 -6 210 5 7 1861 497 306 28 7 chr1 167369949 167370094 -29825338 - ID_B1 SINE B4 -4 220 73 7 1861 246 282 181 11 chr1 167370099 167370364 -29825068 + L1MD LINE L1 4331 4640 -1506 7 1861 393 285 168 12 chr1 167370493 167370660 -29824772 + L1MD LINE L1 4879 5071 -1075 7 1861 2694 218 161 37 chr1 167371183 167372557 -29822875 + RMER1A Other Other 1 1066 0 7 1861 200 226 0 19 chr1 167372577 167372631 -29822801 + A-rich Low_complexity Low_complexity 4 56 0 7 1861 469 361 19 6 chr1 167373140 167373299 -29822133 + RSINE1 SINE B4 2 162 -3 7 1861 578 193 0 48 chr1 167373289 167373414 -29822018 - B1_Mus1 SINE Alu -11 137 19 7 1861 226 250 66 0 chr1 167373500 167373576 -29821856 + L1MD LINE L1 5816 5896 -463 7 1861 325 310 59 10 chr1 167373637 167373738 -29821694 - PB1 SINE Alu -10 117 12 7 1861 573 269 24 30 chr1 167374193 167374358 -29821074 - RSINE1 SINE B4 0 165 2 7 1861 478 221 98 31 chr1 167374509 167374672 -29820760 - Lx7 LINE L1 -375 7321 7148 7 1861 510 290 72 15 chr1 167374851 167375039 -29820393 - B3 SINE B2 0 216 6 7 232 36587 38 1 3 chr1 167375072 167381285 -29814147 - L1Md_T LINE L1 -1 6584 288 7 1862 305 279 25 0 chr1 167381302 167381381 -29814051 - ID4_ SINE ID -2 81 1 7 1862 736 253 72 26 chr1 167381409 167381604 -29813828 + B3 SINE B2 2 205 -11 7 1862 1045 195 377 16 chr1 167381629 167381937 -29813495 - MTD LTR MaLR 0 419 1 7 1862 289 250 40 0 chr1 167382214 167382290 -29813142 + ID4_ SINE ID 2 80 -3 7 1862 253 225 50 0 chr1 167382303 167382383 -29813049 + L1M5 LINE L1 4482 4565 -1581 7 1862 3117 59 20 2 chr1 167382405 167382798 -29812634 + MTB LTR MaLR 1 400 0 7 1862 532 288 53 0 chr1 167382877 167383009 -29812423 - B1F2 SINE Alu -8 141 3 7 1862 1282 317 50 35 chr1 167383225 167383689 -29811743 + RMER5 LTR ERV1 33 503 -31 7 1862 1371 211 59 109 chr1 167384362 167384766 -29810666 + ORR1C2 LTR MaLR 1 384 0 7 1862 380 264 185 30 chr1 167384861 167385200 -29810232 + L1M5 LINE L1 4719 5108 -1038 7 1862 254 372 0 15 chr1 167385351 167385482 -29809950 + GA-rich Low_complexity Low_complexity 6 134 0 7 1862 258 212 490 58 chr1 167385504 167385606 -29809826 + B1F2 SINE Alu 3 148 -1 8 1862 654 198 8 23 chr1 167385677 167385806 -29809626 + B1_Mur1 SINE Alu 23 149 0 8 1862 23 0 0 0 chr1 167385868 167385891 -29809541 + AT_rich Low_complexity Low_complexity 1 23 0 8 1862 692 267 94 5 chr1 167386031 167386197 -29809235 + B3 SINE B2 2 185 -31 8 1862 225 0 0 0 chr1 167386197 167386222 -29809210 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1862 692 267 94 5 chr1 167386222 167386247 -29809185 + B3 SINE B2 186 210 -6 8 1862 280 259 25 45 chr1 167386549 167386652 -29808780 - B1F SINE Alu -29 119 20 8 1862 387 316 36 7 chr1 167386727 167386867 -29808565 - RSINE1 SINE B4 -19 146 3 8 1862 381 260 172 8 chr1 167386891 167387019 -29808413 - B1F SINE Alu 0 149 1 8 1862 635 287 132 93 chr1 167387050 167387330 -29808102 - B4A SINE B4 0 292 2 8 1862 302 184 115 88 chr1 167387344 167387457 -29807975 - PB1D7 SINE Alu 0 120 5 8 1862 454 238 30 0 chr1 167387491 167387592 -29807840 - PB1D10 SINE Alu -8 109 6 8 1862 836 201 27 0 chr1 167387518 167387667 -29807765 - ID_B1 SINE B4 -64 160 8 8 1862 300 27 0 0 chr1 167388046 167388083 -29807349 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 1862 259 213 0 90 chr1 167388243 167388310 -29807122 - ID_B1 SINE B4 -61 163 103 8 1862 317 258 41 41 chr1 167388466 167388563 -29806869 - RSINE1 SINE B4 -67 98 2 8 1862 273 274 153 0 chr1 167388859 167388957 -29806475 + PB1D10 SINE Alu 9 120 0 8 1862 24 0 0 0 chr1 167390233 167390257 -29805175 + GC_rich Low_complexity Low_complexity 1 24 0 8 1862 24 32 0 0 chr1 167390464 167390495 -29804937 + GC_rich Low_complexity Low_complexity 1 31 0 8 1862 455 193 54 18 chr1 167390877 167390988 -29804444 + PB1D10 SINE Alu 1 115 -2 8 1862 203 292 146 0 chr1 167392247 167392336 -29803096 + MIRb SINE MIR 48 149 -119 8 1862 1026 113 14 7 chr1 167392704 167392847 -29802585 - B1_Mus2 SINE Alu -1 146 3 8 1862 834 209 0 0 chr1 167393509 167393648 -29801784 - B1_Mus1 SINE Alu -7 141 3 8 1862 235 231 0 0 chr1 167393799 167393851 -29801581 - ID_B1 SINE B4 0 224 173 8 1862 298 237 17 0 chr1 167393895 167393954 -29801478 + ID_B1 SINE B4 83 142 -82 8 1862 509 134 230 30 chr1 167393901 167394001 -29801431 + B1_Mur4 SINE Alu 10 129 -21 8 1862 190 51 24 49 chr1 167394001 167394042 -29801390 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 8 1862 506 273 0 9 chr1 167394062 167394173 -29801259 - B1_Mur2 SINE Alu -18 131 22 8 1862 355 322 102 34 chr1 167394079 167394256 -29801176 - ID_B1 SINE B4 -32 192 4 8 1862 29 60 0 0 chr1 167394572 167394622 -29800810 + AT_rich Low_complexity Low_complexity 1 50 0 8 1862 188 382 63 24 chr1 167394781 167394907 -29800525 + L4 LINE RTE 1197 1327 -702 8 1862 412 200 45 34 chr1 167395271 167395359 -29800073 - B3A SINE B2 -127 89 1 8 1862 207 0 0 0 chr1 167395460 167395483 -29799949 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1862 1150 50 0 35 chr1 167395483 167395623 -29799809 - B1_Mus1 SINE Alu -6 142 7 8 1862 342 0 0 0 chr1 167396005 167396043 -29799389 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1862 378 200 115 39 chr1 167396061 167396165 -29799267 - ID_B1 SINE B4 0 224 113 8 1862 1237 54 0 26 chr1 167396278 167396429 -29799003 + B1_Mus2 SINE Alu 1 147 0 8 1862 261 0 0 0 chr1 167396637 167396666 -29798766 + (CATA)n Simple_repeat Simple_repeat 1 29 0 8 1862 760 228 7 0 chr1 167396773 167396918 -29798514 + B1_Mur2 SINE Alu 1 146 -3 8 1862 521 278 28 7 chr1 167396962 167397107 -29798325 + B1F1 SINE Alu 2 149 0 8 1862 417 250 98 24 chr1 167397136 167397259 -29798173 + RSINE1 SINE B4 23 154 -11 8 1862 463 353 0 0 chr1 167397969 167398105 -29797327 - B1_Mur1 SINE Alu -12 137 2 8 1862 1766 169 3 62 chr1 167398197 167398538 -29796894 + ORR1A4 LTR MaLR 1 321 -8 8 1862 364 283 0 0 chr1 167398549 167398641 -29796791 + B1F SINE Alu 38 129 -20 8 1862 1085 211 24 29 chr1 167398875 167399085 -29796347 + B3 SINE B2 2 210 -6 8 1862 278 129 0 16 chr1 167399161 167399224 -29796208 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 8 1862 247 242 61 0 chr1 167400005 167400071 -29795361 - MER20 DNA MER1_type -36 183 114 8 1862 266 261 75 64 chr1 167400162 167400256 -29795176 + PB1D10 SINE Alu 17 111 -6 8 1862 506 127 309 0 chr1 167400434 167400544 -29794888 - B1_Mur3 SINE Alu -1 148 5 8 1862 368 191 113 31 chr1 167400574 167400671 -29794761 - PB1D10 SINE Alu -1 116 12 8 1862 315 234 29 87 chr1 167401696 167401799 -29793633 + MT2B LTR ERVL 145 241 -360 8 1862 560 229 9 0 chr1 167401720 167401825 -29793607 + PB1D9 SINE Alu 7 112 -8 8 1862 461 333 8 0 chr1 167402098 167402230 -29793202 + RCHARR1 DNA MER1_type 3 135 -839 8 1862 271 128 0 0 chr1 167402230 167402269 -29793163 + B2_Mm2 SINE B2 1 39 -156 8 1862 1234 111 23 0 chr1 167402269 167402441 -29792991 + B2_Mm2 SINE B2 1 176 -19 8 1862 331 39 231 0 chr1 167402441 167402493 -29792939 - L1Md_F2 LINE L1 -146 6436 6373 8 1862 656 29 0 120 chr1 167402493 167402610 -29792822 + L1Md_F2 LINE L1 6480 6582 0 8 1862 893 209 45 0 chr1 167402612 167402789 -29792643 + B3 SINE B2 27 211 -5 8 1862 1236 266 46 27 chr1 167402775 167403047 -29792385 + RCHARR1 DNA MER1_type 115 392 -582 8 1862 1385 51 51 6 chr1 167403047 167403224 -29792208 - B2_Mm2 SINE B2 -8 187 3 8 1862 1236 266 46 27 chr1 167403224 167403322 -29792110 + RCHARR1 DNA MER1_type 393 492 -482 8 1862 611 229 8 39 chr1 167403326 167403453 -29791979 + B3A SINE B2 5 127 -71 8 1862 235 287 101 50 chr1 167403408 167403507 -29791925 + PB1D7 SINE Alu 11 114 -6 8 1862 275 214 283 33 chr1 167403631 167403723 -29791709 + PB1D10 SINE Alu 3 117 0 8 1862 219 354 60 30 chr1 167403871 167404005 -29791427 + MIRc SINE MIR 2 139 -129 8 1862 475 233 131 8 chr1 167404054 167404184 -29791248 - B1F SINE Alu -1 148 3 8 1862 342 0 0 0 chr1 167404315 167404353 -29791079 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1862 198 0 0 0 chr1 167404353 167404374 -29791058 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1862 22 0 0 0 chr1 167404398 167404420 -29791012 + AT_rich Low_complexity Low_complexity 1 22 0 8 1862 804 245 52 31 chr1 167404646 167404840 -29790592 - B3A SINE B2 0 198 1 8 1862 21 57 0 0 chr1 167405165 167405200 -29790232 + AT_rich Low_complexity Low_complexity 1 35 0 8 1862 593 173 87 0 chr1 167405268 167405372 -29790060 - B1_Mur4 SINE Alu -36 114 2 8 1862 380 363 7 46 chr1 167405376 167405529 -29789903 + ID_B1 SINE B4 64 210 -14 8 1862 431 276 35 63 chr1 167405706 167405849 -29789583 + MER5A DNA MER1_type 51 189 0 8 1862 415 236 82 90 chr1 167405859 167406140 -29789292 - L1MB1 LINE L1 -4 6167 5878 8 1862 856 253 22 0 chr1 167406140 167406318 -29789114 - B3A SINE B2 -16 182 1 8 1862 399 267 112 104 chr1 167406318 167406412 -29789020 - L1MB1 LINE L1 -294 5877 5789 8 1862 334 262 100 0 chr1 167406603 167406683 -29788749 + B1_Mur2 SINE Alu 7 94 -55 8 1862 245 257 13 39 chr1 167406891 167406968 -29788464 - ID4_ SINE ID -6 77 3 8 1862 244 271 99 57 chr1 167407335 167407476 -29787956 - B1F SINE Alu -2 147 1 8 1862 740 287 29 5 chr1 167407568 167407778 -29787654 + B3 SINE B2 1 215 -1 8 1862 588 292 68 0 chr1 167407841 167407988 -29787444 + RSINE1 SINE B4 3 159 -6 8 1862 199 19 89 54 chr1 167408121 167408177 -29787255 + (GTTTG)n Simple_repeat Simple_repeat 4 61 0 8 1862 1275 229 183 12 chr1 167408502 167408901 -29786531 - RMER15 LTR ERVL -67 508 42 8 1862 225 106 85 0 chr1 167408930 167408977 -29786455 - Lx8 LINE L1 -7 7466 7416 8 1862 354 121 0 0 chr1 167409890 167409956 -29785476 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 1862 1426 213 39 62 chr1 167409982 167410337 -29785095 - ORR1E LTR MaLR -7 352 6 8 1862 602 292 37 48 chr1 167410492 167410679 -29784753 + B3A SINE B2 2 186 -12 8 1862 260 257 5 13 chr1 167410706 167410784 -29784648 + ID4 SINE ID 3 78 -74 8 1862 342 0 0 0 chr1 167410784 167410822 -29784610 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1862 223 264 22 54 chr1 167410822 167410835 -29784597 + BC1_Mm scRNA scRNA 79 91 -61 8 1862 446 255 56 19 chr1 167411637 167411745 -29783687 - PB1D10 SINE Alu -5 112 1 8 1862 182 360 26 39 chr1 167411818 167411896 -29783536 + MIRb SINE MIR 29 105 -163 8 1862 237 281 18 0 chr1 167412149 167412206 -29783226 - tRNA-Ala-GCY_ tRNA tRNA -16 59 2 8 1862 715 221 90 6 chr1 167412240 167412417 -29783015 + B3 SINE B2 2 193 -23 8 1862 251 303 12 78 chr1 167412628 167412725 -29782707 + PB1D10 SINE Alu 1 94 -26 8 1862 366 279 75 19 chr1 167412899 167413005 -29782427 + PB1D10 SINE Alu 6 117 0 8 1862 1170 89 7 0 chr1 167413011 167413157 -29782275 + B1_Mus1 SINE Alu 2 148 0 8 1862 1604 174 117 16 chr1 167414007 167414382 -29781050 - MTC LTR MaLR -8 413 1 8 1862 313 279 162 7 chr1 167414627 167414775 -29780657 - Tigger7 DNA MER2_type -32 2459 2289 8 1862 626 269 102 0 chr1 167414798 167414995 -29780437 - Tigger7 DNA MER2_type -2274 217 1 8 1862 383 220 220 0 chr1 167416370 167416461 -29778971 + B1_Mur2 SINE Alu 1 111 -38 8 1862 468 276 0 59 chr1 167416655 167416790 -29778642 + ID_B1 SINE B4 81 207 -17 8 1862 566 253 283 51 chr1 167416968 167417205 -29778227 - B4A SINE B4 0 292 1 8 1862 778 213 95 24 chr1 167417286 167417454 -29777978 + B3A SINE B2 1 180 -18 8 1862 26 74 0 0 chr1 167417463 167417517 -29777915 + AT_rich Low_complexity Low_complexity 1 54 0 8 1862 508 183 169 32 chr1 167417559 167417683 -29777749 + B1_Mur2 SINE Alu 9 149 0 8 1862 960 188 6 0 chr1 167417727 167417897 -29777535 + URR1B DNA MER1_type 52 222 -3 8 1862 2057 162 107 36 chr1 167418002 167418413 -29777019 - RLTR18 LTR ERVK -174 442 3 9 1862 216 281 37 0 chr1 167418510 167418592 -29776840 + (CATG)n Simple_repeat Simple_repeat 4 88 0 9 1862 576 0 0 0 chr1 167418592 167418656 -29776776 + (GA)n Simple_repeat Simple_repeat 2 65 0 9 1862 315 271 110 52 chr1 167418665 167418801 -29776631 + B1F1 SINE Alu 1 144 -5 9 1862 334 195 34 125 chr1 167418810 167418898 -29776534 + B3A SINE B2 1 80 -118 9 1862 203 146 24 0 chr1 167418928 167418969 -29776463 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9 1862 252 0 0 0 chr1 167419696 167419724 -29775708 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1862 469 267 20 0 chr1 167419727 167419828 -29775604 - RSINE1 SINE B4 -24 141 39 9 1862 426 308 8 41 chr1 167419828 167419950 -29775482 + B4 SINE B4 173 290 -2 9 1862 807 229 10 87 chr1 167419990 167420186 -29775246 + B3A SINE B2 2 182 -16 9 1862 895 184 0 21 chr1 167420208 167420352 -29775080 + B1_Mur4 SINE Alu 5 145 -5 9 1862 349 200 25 51 chr1 167420367 167420446 -29774986 + ID_B1 SINE B4 143 219 -5 9 1862 833 188 128 5 chr1 167420464 167420651 -29774781 + B3 SINE B2 1 210 -6 9 1862 330 310 40 69 chr1 167420902 167421176 -29774256 + L1M4 LINE L1 1228 1493 -5049 9 1862 246 32 0 0 chr1 167421182 167421213 -29774219 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1862 326 299 60 47 chr1 167421242 167421498 -29773934 + L1_Mur1 LINE L1 1506 1764 -4116 9 1862 1575 270 96 28 chr1 167421603 167422205 -29773227 - L1MA9 LINE L1 -95 6217 5575 9 1862 218 379 84 22 chr1 167422261 167422439 -29772993 - L3 LINE CR1 -986 3503 3315 9 1862 305 267 0 13 chr1 167422448 167422524 -29772908 + AluF_3 SINE Alu 137 211 -100 9 1862 502 278 74 15 chr1 167422613 167422748 -29772684 - B1_Mur2 SINE Alu -5 144 2 9 1862 414 0 0 0 chr1 167422763 167422809 -29772623 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1862 515 348 8 8 chr1 167422809 167422987 -29772445 - B3A SINE B2 -33 183 4 9 1862 1541 149 31 4 chr1 167423051 167423307 -29772125 - ORR1B1 LTR MaLR -1 393 131 9 1862 4201 167 107 0 chr1 167424056 167424859 -29770573 - RMER19B LTR ERVK -13 889 1 9 1862 301 216 87 67 chr1 167424885 167424989 -29770443 + MMSAT4 Satellite Satellite 49 154 -14 9 1862 794 221 20 16 chr1 167425250 167425791 -29769641 + MMSAT4 Satellite Satellite 1 543 -1 9 1862 3082 133 21 14 chr1 167426073 167426590 -29768842 - RLTR11A LTR ERVK -1 527 7 9 1862 284 230 157 20 chr1 167426653 167426755 -29768677 + RMER15 LTR ERVL 1 116 -459 9 1862 681 299 27 27 chr1 167426773 167426993 -29768439 + RMER15 LTR ERVL 247 466 -109 9 1862 522 187 0 0 chr1 167427258 167427349 -29768083 + B3 SINE B2 1 91 -125 9 1862 893 269 20 15 chr1 167427412 167427616 -29767816 + B3 SINE B2 4 208 -8 9 1862 442 296 59 52 chr1 167427636 167427789 -29767643 + RSINE1 SINE B4 4 157 -8 9 1862 704 224 7 10 chr1 167428018 167428156 -29767276 - ID_B1 SINE B4 -62 230 93 9 1862 228 288 41 90 chr1 167428048 167428170 -29767262 - MT2B LTR ERVL -323 278 163 9 1862 994 221 117 5 chr1 167428171 167428385 -29767047 - 7SK RNA RNA -92 239 2 9 1862 280 269 39 112 chr1 167428549 167428754 -29766678 + RMER10A LTR ERVL 18 207 -235 9 1862 213 108 0 0 chr1 167428765 167428802 -29766630 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 9 1862 269 351 0 0 chr1 167428863 167428940 -29766492 - ID4_ SINE ID -5 78 2 9 1862 290 127 95 0 chr1 167429316 167429379 -29766053 - Lx7 LINE L1 -273 7423 7355 9 1862 237 132 0 0 chr1 167429412 167429450 -29765982 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1862 733 240 7 0 chr1 167429488 167429634 -29765798 + B1_Mus1 SINE Alu 1 147 -1 9 1862 215 175 0 17 chr1 167429634 167429692 -29765740 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 9 1862 337 208 0 13 chr1 167429716 167429794 -29765638 - Lx7 LINE L1 -359 7337 7261 9 1862 6720 139 36 158 chr1 167429816 167431171 -29764261 - L1_Mur3 LINE L1 -384 5496 4365 9 1862 393 102 0 0 chr1 167431171 167431230 -29764202 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1862 6720 139 36 158 chr1 167431230 167431585 -29763847 - L1_Mur3 LINE L1 -1516 4364 3994 9 1862 3113 168 9 11 chr1 167431584 167432145 -29763287 - L1_Mur3 LINE L1 -6588 1140 581 9 1862 374 179 170 0 chr1 167432147 167432253 -29763179 - L1_Mur3 LINE L1 -7349 379 256 9 1862 388 218 55 11 chr1 167432296 167432425 -29763007 - PB1D7 SINE Alu -7 142 1 9 1862 262 160 19 39 chr1 167432934 167432986 -29762446 + MT2B LTR ERVL 190 240 -361 9 1862 533 198 10 0 chr1 167432943 167433044 -29762388 + B1_Mur1 SINE Alu 43 144 -5 9 1862 414 146 0 0 chr1 167434270 167434352 -29761080 + (CA)n Simple_repeat Simple_repeat 1 82 0 9 1862 367 150 17 0 chr1 167434371 167434431 -29761001 + MTD LTR MaLR 4 64 -357 9 1862 226 0 29 29 chr1 167434431 167434466 -29760966 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1862 1469 92 0 20 chr1 167434480 167434679 -29760753 + B2_Mm2 SINE B2 1 195 0 9 1862 434 65 16 0 chr1 167434679 167434741 -29760691 + (GAAAA)n Simple_repeat Simple_repeat 1 63 0 9 1862 1022 254 48 146 chr1 167434743 167435121 -29760311 + MTD LTR MaLR 77 417 -2 9 1862 437 261 67 34 chr1 167435216 167435335 -29760097 - B1F SINE Alu -17 132 10 9 1862 915 236 10 20 chr1 167435356 167435555 -29759877 - B3 SINE B2 0 216 20 9 1862 1050 154 0 0 chr1 167435581 167435730 -29759702 - B1_Mur4 SINE Alu -1 149 1 9 1862 218 179 0 0 chr1 167435730 167435769 -29759663 - B3 SINE B2 -176 40 2 9 1862 230 317 123 19 chr1 167435801 167435907 -29759525 + B1F SINE Alu 23 139 -10 9 1862 296 286 13 0 chr1 167436178 167436255 -29759177 + CT-rich Low_complexity Low_complexity 1 78 0 9 1862 546 218 0 47 chr1 167436262 167436368 -29759064 - B1F1 SINE Alu -42 107 7 9 1862 567 212 16 25 chr1 167436858 167436979 -29758453 + PB1D7 SINE Alu 1 120 0 9 1862 317 256 67 0 chr1 167437202 167437292 -29758140 + PB1D9 SINE Alu 19 114 -6 9 1862 558 309 46 0 chr1 167437303 167437455 -29757977 + ID_B1 SINE B4 1 159 -65 9 1862 801 308 38 5 chr1 167437453 167437665 -29757767 + ID_B1 SINE B4 5 223 -1 9 1862 841 292 0 5 chr1 167437900 167438110 -29757322 + B3 SINE B2 1 209 -7 9 1862 780 68 0 0 chr1 167438514 167438617 -29756815 + (TC)n Simple_repeat Simple_repeat 1 103 0 9 1862 255 31 0 0 chr1 167438617 167438648 -29756784 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1862 255 79 0 0 chr1 167438858 167438896 -29756536 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 9 1862 2456 118 33 6 chr1 167438916 167439282 -29756150 + RLTR14 LTR ERV1 7 382 0 9 1862 671 201 14 28 chr1 167439349 167439492 -29755940 + ID_B1 SINE B4 84 224 0 9 1862 27 0 0 0 chr1 167439608 167439635 -29755797 + AT_rich Low_complexity Low_complexity 1 27 0 9 1862 322 265 0 14 chr1 167439731 167439820 -29755612 + B1F SINE Alu 5 92 -28 9 1862 228 216 0 0 chr1 167439875 167439926 -29755506 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 9 1862 858 163 44 0 chr1 167440020 167440155 -29755277 + B1_Mur3 SINE Alu 1 141 -8 9 1862 186 71 0 0 chr1 167440788 167440816 -29754616 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 9 1862 506 171 134 9 chr1 167440817 167440929 -29754503 - ID_B1 SINE B4 -4 220 95 9 1862 5985 44 3 1 chr1 167441065 167441755 -29753677 + L1Md_F2 LINE L1 5892 6582 0 9 1862 306 0 0 0 chr1 167441820 167441854 -29753578 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1862 207 100 0 0 chr1 167441911 167441941 -29753491 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 1862 409 60 0 56 chr1 167441941 167442012 -29753420 + (GAAAA)n Simple_repeat Simple_repeat 2 68 0 9 1862 228 340 95 11 chr1 167442164 167442259 -29753173 - BC1_Mm scRNA scRNA -49 103 1 9 1862 210 278 79 53 chr1 167442279 167442355 -29753077 - ID4_ SINE ID -1 82 5 9 1862 351 289 6 101 chr1 167442379 167442537 -29752895 - ID_B1 SINE B4 0 224 82 9 1862 342 341 26 119 chr1 167442706 167442899 -29752533 + B4 SINE B4 44 218 -74 9 1862 670 270 0 14 chr1 167442768 167442907 -29752525 + B1_Mur1 SINE Alu 11 147 -2 9 1862 210 236 0 0 chr1 167442935 167442990 -29752442 + (TAA)n Simple_repeat Simple_repeat 1 55 0 9 1862 432 292 28 9 chr1 167442992 167443099 -29752333 + B1F SINE Alu 1 109 -40 9 1862 534 115 35 61 chr1 167443641 167443756 -29751676 + ORR1A4 LTR MaLR 1 100 -229 9 1862 695 41 62 0 chr1 167443740 167443837 -29751595 + ORR1A4 LTR MaLR 227 329 0 9 1862 367 242 134 62 chr1 167443900 167443997 -29751435 - PB1D10 SINE Alu -3 124 21 9 1862 279 281 0 0 chr1 167444396 167444462 -29750970 - ID4 SINE ID -10 73 8 9 1862 278 208 49 49 chr1 167444513 167444594 -29750838 - ID_B1 SINE B4 -22 202 122 9 1862 401 287 16 54 chr1 167444841 167444970 -29750462 - PB1 SINE Alu 0 127 4 9 1862 776 299 82 37 chr1 167445682 167446085 -29749347 - RMER5 LTR ERV1 -68 466 46 9 1862 1071 116 7 0 chr1 167446210 167446357 -29749075 + B1_Mus1 SINE Alu 1 148 0 9 1862 306 243 0 0 chr1 167446396 167446466 -29748966 + ID4 SINE ID 11 80 -3 9 1862 785 127 0 7 chr1 167446557 167446692 -29748740 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 9 1862 239 344 81 16 chr1 167447719 167447843 -29747589 + MIRb SINE MIR 31 162 -106 9 1862 288 0 0 0 chr1 167448088 167448120 -29747312 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1862 735 184 52 0 chr1 167448751 167448887 -29746545 - B1_Mur2 SINE Alu -6 143 1 9 1862 286 276 0 0 chr1 167448918 167448976 -29746456 - RSINE1 SINE B4 0 165 108 9 1862 588 304 21 21 chr1 167449030 167449218 -29746214 - B3 SINE B2 -1 215 28 9 1862 216 135 0 0 chr1 167449220 167449257 -29746175 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1862 483 216 39 16 chr1 167449300 167449427 -29746005 - B1F SINE Alu -5 144 15 9 1862 416 19 19 0 chr1 167450115 167450168 -29745264 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1862 503 152 147 29 chr1 167450322 167450458 -29744974 + B3 SINE B2 65 216 0 1 1862 670 117 0 43 chr1 167450478 167450594 -29744838 - B1_Mus1 SINE Alu 0 148 38 1 1862 492 267 15 0 chr1 167451099 167451230 -29744202 + ORR1E LTR MaLR 3 135 -224 1 1862 309 206 58 67 chr1 167451269 167451373 -29744059 + MT2B LTR ERVL 155 257 -344 1 1862 792 86 84 23 chr1 167451288 167451419 -29744013 + B1_Mur4 SINE Alu 11 149 -1 1 1862 441 0 0 0 chr1 167451442 167451491 -29743941 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1862 360 0 0 0 chr1 167452121 167452161 -29743271 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1862 979 122 7 0 chr1 167452533 167452680 -29742752 + B1_Mus1 SINE Alu 1 148 0 1 1862 679 100 9 9 chr1 167452680 167452791 -29742641 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 1 1862 323 250 0 0 chr1 167453081 167453149 -29742283 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 1 1862 184 260 178 28 chr1 167453543 167453650 -29741782 - MIR SINE MIR -97 165 43 1 1862 225 0 0 0 chr1 167453710 167453735 -29741697 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 1862 205 247 168 13 chr1 167454441 167454545 -29740887 + MIR SINE MIR 63 182 -86 1 1862 300 325 0 0 chr1 167454585 167454662 -29740770 - ID4_ SINE ID -1 82 6 1 1862 907 269 109 0 chr1 167455415 167455671 -29739761 + B4A SINE B4 3 286 -6 1 1862 770 173 63 21 chr1 167455842 167455984 -29739448 + B1_Mur2 SINE Alu 1 148 -1 1 1862 381 261 0 0 chr1 167456014 167456102 -29739330 + PB1 SINE Alu 29 116 -11 1 1862 36183 35 1 0 chr1 167456745 167463018 -29732414 + L1Md_T LINE L1 1 5589 -297 1 1862 9147 6 0 0 chr1 167463018 167464014 -29731418 + L1Md_T LINE L1 5590 6585 0 1 1862 198 0 0 0 chr1 167464073 167464095 -29731337 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1862 249 39 98 0 chr1 167464440 167464491 -29730941 - B2_Mm2 SINE B2 -1 194 139 1 1862 1203 78 72 0 chr1 167464517 167464683 -29730749 - B2_Mm1t SINE B2 -14 179 2 1 1862 233 203 0 4 chr1 167464852 167464905 -29730527 + B1F SINE Alu 13 64 -85 1 1862 291 311 75 0 chr1 167465368 167465474 -29729958 - ID_B1 SINE B4 -30 194 81 1 1862 244 276 53 0 chr1 167465486 167465562 -29729870 - U6 snRNA snRNA -2 105 26 1 1862 282 301 91 12 chr1 167465582 167465625 -29729807 - L1M5 LINE L1 -969 5177 5126 1 1862 276 30 0 0 chr1 167465625 167465658 -29729774 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1862 282 301 91 12 chr1 167465658 167465779 -29729653 - L1M5 LINE L1 -1021 5125 5001 1 1862 316 138 136 15 chr1 167465786 167465852 -29729580 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 1 1862 584 165 195 58 chr1 167466157 167466331 -29729101 + URR1B DNA MER1_type 5 202 -23 1 1862 226 83 104 0 chr1 167466886 167466934 -29728498 - FAM SINE Alu -1 314 262 1 1862 588 266 0 7 chr1 167466893 167467037 -29728395 - ID_B1 SINE B4 0 224 82 1 1862 256 159 100 14 chr1 167467666 167467736 -29727696 + L1ME4a LINE L1 6038 6113 -11 1 1862 276 210 0 31 chr1 167467890 167467954 -29727478 + ID4 SINE ID 10 71 -12 1 1862 464 216 0 38 chr1 167468244 167468350 -29727082 + ID_B1 SINE B4 104 205 -19 1 1862 284 341 11 0 chr1 167469360 167469448 -29725984 - ID SINE ID -135 89 1 1 1862 1976 126 111 6 chr1 167470191 167470534 -29724898 - MTC LTR MaLR -1 420 42 1 1862 355 176 23 12 chr1 167470534 167470620 -29724812 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 1 1862 630 259 36 36 chr1 167470638 167470834 -29724598 + B3A SINE B2 1 196 -2 1 1862 1062 212 49 0 chr1 167470876 167471079 -29724353 + B3 SINE B2 4 216 0 1 1862 232 220 0 0 chr1 167471293 167471343 -29724089 - tRNA-Ala-GCA tRNA tRNA -23 52 3 1 1862 342 0 0 0 chr1 167472086 167472124 -29723308 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1862 971 144 0 0 chr1 167472140 167472286 -29723146 + B1_Mus1 SINE Alu 2 147 -1 1 1862 539 66 13 0 chr1 167472286 167472362 -29723070 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1862 216 228 0 0 chr1 167472420 167472477 -29722955 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1 1862 211 333 33 8 chr1 167472505 167472626 -29722806 + L2a LINE L2 3303 3426 0 1 1862 419 165 0 12 chr1 167472875 167472961 -29722471 + CT-rich Low_complexity Low_complexity 4 88 0 1 1862 272 258 79 0 chr1 167472979 167473068 -29722364 + B1F2 SINE Alu 1 96 -53 1 1862 402 21 0 0 chr1 167473086 167473133 -29722299 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1862 1174 239 17 64 chr1 167473608 167473903 -29721529 - B4A SINE B4 -10 282 2 1 1862 389 309 34 67 chr1 167474375 167474524 -29720908 - B1F2 SINE Alu 0 149 6 1 1862 237 324 97 18 chr1 167474424 167474537 -29720895 - B4A SINE B4 -97 195 74 1 1862 291 157 0 0 chr1 167474742 167474793 -29720639 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1862 401 241 76 13 chr1 167474843 167474970 -29720462 - B4A SINE B4 -12 280 136 1 1862 274 303 45 0 chr1 167475090 167475179 -29720253 - PB1D10 SINE Alu -7 110 18 1 1862 308 331 75 51 chr1 167475284 167475615 -29719817 + L1MC4a LINE L1 5606 5944 -1938 1 1862 534 184 39 16 chr1 167475619 167475746 -29719686 + B3 SINE B2 2 131 -85 1 1862 495 0 0 0 chr1 167475762 167475817 -29719615 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1862 350 42 21 0 chr1 167476067 167476115 -29719317 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1862 353 296 70 26 chr1 167476115 167476271 -29719161 - RSINE1 SINE B4 -1 164 2 1 1862 2031 151 71 28 chr1 167477202 167477598 -29717834 - MTC LTR MaLR -8 413 1 1 1862 378 0 0 0 chr1 167478528 167478570 -29716862 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1862 464 282 47 120 chr1 167478659 167478872 -29716560 + B4A SINE B4 8 209 -83 1 1862 1772 199 56 11 chr1 167478872 167479227 -29716205 - ORR1D1 LTR MaLR -3 371 1 1 1862 464 282 47 120 chr1 167479227 167479247 -29716185 + B4A SINE B4 210 224 -68 1 1862 207 0 0 0 chr1 167479247 167479270 -29716162 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1862 893 161 7 0 chr1 167479270 167479413 -29716019 + B1_Mur3 SINE Alu 1 144 -5 1 1862 643 321 32 5 chr1 167479420 167479605 -29715827 + B3A SINE B2 2 191 -7 1 1862 1538 37 21 11 chr1 167479629 167479820 -29715612 + B2_Mm1t SINE B2 1 193 0 1 1862 329 194 13 77 chr1 167479823 167479901 -29715531 + B4A SINE B4 220 292 0 1 1862 375 192 0 0 chr1 167479901 167479979 -29715453 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1862 667 262 16 43 chr1 167480335 167480522 -29714910 + B3A SINE B2 1 182 -16 1 1862 306 0 0 0 chr1 167481505 167481539 -29713893 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1862 285 246 15 0 chr1 167481589 167481654 -29713778 + ID4 SINE ID 2 67 -16 1 1862 243 0 0 0 chr1 167481666 167481693 -29713739 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1862 1500 62 0 20 chr1 167481730 167481929 -29713503 + B2_Mm2 SINE B2 1 195 0 1 1862 2905 102 10 15 chr1 167482569 167482978 -29712454 - MTB_Mm LTR MaLR 0 407 1 1 1862 2872 204 64 31 chr1 167482994 167483457 -29711975 - Lx8 LINE L1 -480 6993 6501 1 1862 2213 128 6 0 chr1 167483457 167483784 -29711648 - ORR1A4 LTR MaLR 0 329 1 1 1862 2872 204 64 31 chr1 167483784 167483958 -29711474 - Lx8 LINE L1 -973 6500 6335 1 1862 191 189 19 0 chr1 167483969 167484022 -29711410 + G-rich Low_complexity Low_complexity 2 55 0 1 1862 396 303 63 88 chr1 167484027 167484175 -29711257 - Lx8 LINE L1 -1144 6329 6178 1 1862 756 208 208 0 chr1 167484175 167484353 -29711079 + B3 SINE B2 2 216 0 1 1862 396 303 63 88 chr1 167484353 167484443 -29710989 - Lx8 LINE L1 -1296 6177 6098 1 1862 529 165 226 0 chr1 167484480 167484595 -29710837 - B1F2 SINE Alu -7 142 2 1 1862 539 314 12 12 chr1 167484631 167484792 -29710640 + RSINE1 SINE B4 1 161 -4 1 1862 356 235 68 10 chr1 167485275 167485378 -29710054 + B1F SINE Alu 41 149 0 1 1862 725 264 124 0 chr1 167485614 167485792 -29709640 + ID_B1 SINE B4 20 219 -5 1 1862 261 0 0 0 chr1 167486457 167486486 -29708946 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1862 817 168 7 7 chr1 167486492 167486630 -29708802 - B1_Mur3 SINE Alu -11 138 1 1 1862 1531 202 76 31 chr1 167487330 167487687 -29707745 - ORR1C1 LTR MaLR -5 373 1 1 1862 494 266 27 20 chr1 167487695 167487841 -29707591 + ID_B1 SINE B4 76 222 -2 1 1862 281 329 0 0 chr1 167487901 167487977 -29707455 + ID_B1 SINE B4 116 191 -33 1 1862 720 246 95 17 chr1 167490493 167490725 -29704707 - ORR1D2 LTR MaLR -101 269 20 1 1862 225 333 0 0 chr1 167490725 167490788 -29704644 + B3A SINE B2 75 137 -61 1 1862 1109 138 10 31 chr1 167490852 167491047 -29704385 + B2_Mm1t SINE B2 2 192 -1 1 1862 265 220 0 0 chr1 167491083 167491133 -29704299 + B1F2 SINE Alu 10 59 -90 1 1862 752 201 62 81 chr1 167491269 167491480 -29703952 - B3 SINE B2 -9 207 1 1 1862 199 250 101 11 chr1 167491583 167491672 -29703760 - MIRc SINE MIR -97 171 75 1 1862 1235 34 0 0 chr1 167492031 167492177 -29703255 + B1_Mus2 SINE Alu 2 147 0 1 1862 425 147 0 29 chr1 167492180 167492285 -29703147 + A-rich Low_complexity Low_complexity 1 102 0 1 1862 376 224 62 45 chr1 167492689 167492801 -29702631 - PB1D7 SINE Alu -1 119 6 1 1862 387 0 0 0 chr1 167493402 167493445 -29701987 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1862 599 301 122 29 chr1 167494532 167494843 -29700589 - MTD LTR MaLR -39 380 41 1 1862 892 190 0 0 chr1 167495711 167495848 -29699584 + B1_Mur2 SINE Alu 2 138 -11 1 1862 1144 230 235 3 chr1 167496070 167496410 -29699022 - MTD LTR MaLR 0 419 1 1 1862 1528 245 61 40 chr1 167496586 167497080 -29698352 - RMER5 LTR ERV1 0 534 31 1 1862 1253 73 73 0 chr1 167497088 167497265 -29698167 - B2_Mm2 SINE B2 -5 190 1 1 1862 569 299 96 51 chr1 167498127 167498441 -29696991 + MER2 DNA MER2_type 18 345 0 1 1862 253 311 124 35 chr1 167498587 167498877 -29696555 - LTR79 LTR ERVL -171 356 41 1 1862 1189 61 0 0 chr1 167498950 167499098 -29696334 + B1_Mus1 SINE Alu 1 148 0 1 1862 381 103 0 0 chr1 167499104 167499172 -29696260 + (A)n Simple_repeat Simple_repeat 1 68 0 1 1862 380 234 41 83 chr1 167499440 167499561 -29695871 + PB1D7 SINE Alu 5 120 0 1 1862 391 221 52 17 chr1 167499744 167499859 -29695573 - MER5A DNA MER1_type -8 181 63 1 1862 561 320 0 0 chr1 167501096 167501243 -29694189 + RSINE1 SINE B4 3 149 -16 1 1862 180 0 0 0 chr1 167501245 167501265 -29694167 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1862 213 94 0 0 chr1 167501555 167501587 -29693845 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1862 297 0 0 0 chr1 167501587 167501619 -29693813 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1862 235 196 0 21 chr1 167501686 167501733 -29693699 - RSINE1 SINE B4 -117 48 3 5 1862 879 161 22 0 chr1 167502159 167502296 -29693136 - B1_Mur3 SINE Alu -9 140 1 6 1862 1062 136 45 0 chr1 167502306 167502319 -29693113 - B2_Mm2 SINE B2 -9 186 169 7 1862 288 0 0 0 chr1 167502319 167502351 -29693081 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 8 1862 1062 136 45 0 chr1 167502351 167502513 -29692919 - B2_Mm2 SINE B2 -27 168 4 7 1862 257 222 138 69 chr1 167502517 167502604 -29692828 - B4 SINE B4 -199 93 1 9 1862 406 297 81 17 chr1 167502943 167503201 -29692231 - MLT1A1 LTR MaLR 0 408 102 1 1862 856 148 14 7 chr1 167503243 167503386 -29692046 + B1_Mur4 SINE Alu 1 144 -6 1 1862 375 137 0 0 chr1 167503386 167503459 -29691973 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 1862 1185 106 5 78 chr1 167503662 167503867 -29691565 - B2_Mm2 SINE B2 0 195 6 1 1862 1023 129 0 0 chr1 167503869 167504083 -29691349 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 1 1862 1250 164 22 14 chr1 167504318 167504541 -29690891 - URR1B DNA MER1_type 0 225 1 1 1862 607 192 0 0 chr1 167505123 167505227 -29690205 + ID_B1 SINE B4 102 205 -19 1 1862 851 157 9 18 chr1 167505248 167505470 -29689962 + GA-rich Low_complexity Low_complexity 1 219 0 1 1862 406 264 49 8 chr1 167505519 167505641 -29689791 + PB1 SINE Alu 1 127 0 1 1862 23 0 0 0 chr1 167506575 167506598 -29688834 + AT_rich Low_complexity Low_complexity 1 23 0 1 1862 279 0 0 0 chr1 167506599 167506630 -29688802 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1862 252 0 0 0 chr1 167506630 167506657 -29688775 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1862 232 226 11 87 chr1 167506669 167506761 -29688671 - RSINE1 SINE B4 -39 126 42 2 1862 1050 255 122 88 chr1 167507261 167507475 -29687957 - RMER5 LTR ERV1 -27 507 263 2 1862 779 162 49 7 chr1 167507475 167507618 -29687814 - B1_Mur4 SINE Alu 0 150 2 2 1862 1050 255 122 88 chr1 167507618 167507893 -29687539 - RMER5 LTR ERV1 -272 262 1 2 1862 1215 194 0 9 chr1 167508365 167508583 -29686849 + B3 SINE B2 1 216 0 2 1862 887 151 0 33 chr1 167508626 167508777 -29686655 + B1_Mm SINE Alu 2 147 0 2 1862 1318 97 32 5 chr1 167508780 167508967 -29686465 + B2_Mm2 SINE B2 2 193 -2 2 1862 26 30 0 0 chr1 167509016 167509049 -29686383 + AT_rich Low_complexity Low_complexity 1 33 0 2 1862 22 0 0 0 chr1 167509175 167509197 -29686235 + AT_rich Low_complexity Low_complexity 1 22 0 2 1862 882 175 15 0 chr1 167509289 167509426 -29686006 - B1_Mur2 SINE Alu -2 147 9 3 1862 824 188 18 53 chr1 167509607 167509776 -29685656 + B2_Mm2 SINE B2 31 193 -2 3 1863 603 0 0 0 chr1 167510299 167510366 -29685066 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1863 684 269 37 26 chr1 167510387 167510578 -29684854 - B3 SINE B2 -23 193 1 3 1863 207 239 0 0 chr1 167510627 167510673 -29684759 - L3 LINE CR1 -342 4147 4102 3 1863 2014 138 91 33 chr1 167510712 167511161 -29684271 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1863 1252 99 5 11 chr1 167511191 167511375 -29684057 - B2_Mm2 SINE B2 -4 191 9 3 1863 4594 160 98 20 chr1 167511804 167512775 -29682657 + L1_Mur3 LINE L1 298 1344 -6384 3 1863 344 291 87 0 chr1 167512775 167512790 -29682642 + B4 SINE B4 68 91 -201 3 1863 578 178 5 17 chr1 167512790 167512920 -29682512 + B1_Mus2 SINE Alu 1 125 -24 3 1863 2256 163 60 24 chr1 167512921 167513374 -29682058 + L1_Mur3 LINE L1 3784 4252 -1628 3 1863 1218 54 0 0 chr1 167513417 167513564 -29681868 + B1_Mus1 SINE Alu 1 147 -1 4 1863 425 19 19 0 chr1 167513575 167513629 -29681803 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1863 222 37 0 0 chr1 167513631 167513658 -29681774 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 4 1863 189 302 0 0 chr1 167514136 167514179 -29681253 + MIRm SINE MIR 209 251 -25 4 1863 265 219 55 0 chr1 167514400 167514473 -29680959 + MIR SINE MIR 106 182 -80 4 1863 297 293 0 39 chr1 167514826 167514904 -29680528 - ID2 SINE ID 0 83 9 4 1863 426 264 40 40 chr1 167515324 167515450 -29679982 - B1F2 SINE Alu -23 126 1 4 1863 204 305 0 33 chr1 167515958 167516019 -29679413 + L2c LINE L2 3289 3347 -40 4 1863 452 309 14 2 chr1 167516262 167516387 -29679045 - B1F SINE Alu 0 147 20 4 1863 330 26 0 0 chr1 167516396 167516435 -29678997 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1863 439 124 33 22 chr1 167516493 167516584 -29678848 - B2_Mm2 SINE B2 -4 191 100 5 1863 935 239 19 0 chr1 167516610 167516815 -29678617 - B3 SINE B2 -7 209 1 5 1863 1323 81 29 0 chr1 167516842 167517016 -29678416 - B2_Mm2 SINE B2 -16 179 1 5 1863 266 192 0 0 chr1 167517042 167517094 -29678338 - Lx8 LINE L1 0 7473 7422 5 1863 369 0 0 0 chr1 167517094 167517135 -29678297 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1863 268 298 60 0 chr1 167517151 167517235 -29678197 + Lx8 LINE L1 7281 7369 -104 5 1863 1242 259 120 50 chr1 167517236 167517796 -29677636 - Lx8 LINE L1 -178 7295 6697 5 1863 201 39 0 0 chr1 167517822 167517848 -29677584 + (CCCCAA)n Simple_repeat Simple_repeat 1 26 0 5 1863 584 206 77 77 chr1 167518416 167518611 -29676821 + B3A SINE B2 1 195 -3 5 1863 272 132 0 0 chr1 167518625 167518663 -29676769 + B1_Mus1 SINE Alu 2 39 -109 5 1863 635 182 0 8 chr1 167518750 167518861 -29676571 + B1_Mus1 SINE Alu 34 136 -13 5 1863 23 0 0 0 chr1 167518924 167518947 -29676485 + AT_rich Low_complexity Low_complexity 1 23 0 6 1863 434 279 35 49 chr1 167518964 167519107 -29676325 + RSINE1 SINE B4 25 165 0 6 1863 241 246 0 84 chr1 167519051 167519122 -29676310 + B3A SINE B2 131 195 -3 6 1863 294 29 0 0 chr1 167520212 167520247 -29675185 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1863 261 310 75 7 chr1 167520286 167520432 -29675000 + RSINE1 SINE B4 4 159 -6 6 1863 243 204 0 0 chr1 167520597 167520651 -29674781 + (CATG)n Simple_repeat Simple_repeat 3 56 0 6 1863 379 210 150 0 chr1 167520707 167520807 -29674625 - PB1D10 SINE Alu 0 117 3 6 1863 385 214 43 43 chr1 167526184 167526277 -29669155 - PB1D10 SINE Alu 0 117 25 6 1863 1168 58 0 0 chr1 167527154 167527293 -29668139 + B1_Mus2 SINE Alu 1 139 -8 6 1863 215 0 67 0 chr1 167527302 167527332 -29668100 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1863 445 203 43 26 chr1 167527502 167527602 -29667830 - PB1D10 SINE Alu -8 109 13 7 1863 312 91 0 0 chr1 167527635 167527679 -29667753 + (TATG)n Simple_repeat Simple_repeat 2 45 0 7 1863 273 260 26 0 chr1 167527680 167527757 -29667675 + (CCTA)n Simple_repeat Simple_repeat 3 81 0 7 1863 279 337 0 110 chr1 167527888 167527988 -29667444 + Tigger7 DNA MER2_type 4 92 -2399 7 1863 296 182 76 0 chr1 167528011 167528077 -29667355 - L1MEc LINE L1 -5234 1166 1096 7 1863 277 224 160 20 chr1 167528102 167528202 -29667230 - PB1D7 SINE Alu -1 119 6 7 1863 968 202 23 42 chr1 167528360 167528577 -29666855 - B3 SINE B2 -3 213 1 7 1863 379 257 46 28 chr1 167528630 167528738 -29666694 - PB1D10 SINE Alu -6 111 2 7 1863 307 262 175 0 chr1 167528739 167528865 -29666567 - L1MEc LINE L1 -5561 839 692 7 1863 7952 23 0 0 chr1 167529950 167530852 -29664580 + L1Md_A LINE L1 5681 6582 0 7 1863 818 235 52 29 chr1 167530877 167530912 -29664520 - B3 SINE B2 -1 215 181 7 1863 636 129 0 0 chr1 167530912 167531013 -29664419 + (TA)n Simple_repeat Simple_repeat 1 101 0 8 1863 818 235 52 29 chr1 167531013 167531187 -29664245 - B3 SINE B2 -36 180 1 7 1863 253 335 56 67 chr1 167531362 167531435 -29663997 - B3A SINE B2 -15 183 10 8 1863 400 154 87 117 chr1 167531435 167531538 -29663894 - B4 SINE B4 -191 101 2 8 1863 225 0 0 0 chr1 167532090 167532115 -29663317 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1863 253 156 26 0 chr1 167532857 167532934 -29662498 + (CA)n Simple_repeat Simple_repeat 1 79 0 8 1863 505 222 188 0 chr1 167534266 167534383 -29661049 - ID_B1 SINE B4 -2 222 84 8 1863 22 0 0 0 chr1 167535562 167535584 -29659848 + AT_rich Low_complexity Low_complexity 1 22 0 8 1863 366 75 29 15 chr1 167535652 167535720 -29659712 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 8 1863 522 282 61 0 chr1 167536147 167536278 -29659154 + MLT1A1 LTR MaLR 268 406 -2 8 1863 388 240 135 0 chr1 167536444 167536548 -29658884 - MIRb SINE MIR -120 148 31 8 1863 774 173 8 0 chr1 167537266 167537393 -29658039 - B1_Mm SINE Alu -18 129 2 9 1863 210 245 0 0 chr1 167537568 167537617 -29657815 - MIRb SINE MIR -81 187 139 9 1863 1510 254 41 25 chr1 167537692 167538056 -29657376 + MTE2a LTR MaLR 2 371 -8 9 1863 198 0 0 0 chr1 167538742 167538764 -29656668 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1863 312 183 33 16 chr1 167538890 167538951 -29656481 - PB1D10 SINE Alu -3 114 53 9 1863 21 0 0 0 chr1 167538988 167539009 -29656423 + AT_rich Low_complexity Low_complexity 1 21 0 9 1863 731 221 0 0 chr1 167539056 167539192 -29656240 + B1_Mur1 SINE Alu 1 136 -13 9 1863 365 229 0 0 chr1 167539211 167539281 -29656151 + B3A SINE B2 1 70 -128 9 1863 222 240 111 74 chr1 167539281 167539292 -29656140 + B4 SINE B4 1 84 -208 9 1863 949 280 84 29 chr1 167539344 167539796 -29655636 - L1MC2 LINE L1 -34 6310 5834 9 1863 666 168 0 0 chr1 167539873 167539980 -29655452 + B1_Mm SINE Alu 1 107 -40 1 1863 282 232 98 29 chr1 167541189 167541291 -29654141 + B1F1 SINE Alu 9 117 -32 1 1863 778 0 0 11 chr1 167541770 167541863 -29653569 - B1_Mus2 SINE Alu -2 145 54 1 1863 1409 93 5 5 chr1 167541871 167542065 -29653367 - B2_Mm2 SINE B2 0 195 2 1 1863 416 287 160 25 chr1 167542264 167542539 -29652893 + L2 LINE L2 2684 2995 -424 1 1863 1869 234 66 34 chr1 167542829 167543387 -29652045 - RLTR19-int LTR ERVK -4118 2019 1444 1 1863 291 367 0 0 chr1 167543423 167543570 -29651862 + (CCA)n Simple_repeat Simple_repeat 1 147 0 1 1863 567 222 100 3 chr1 167544663 167544864 -29650568 + L1MA5A LINE L1 5672 5931 -366 1 1863 275 213 48 16 chr1 167545130 167545192 -29650240 + RSINE1 SINE B4 9 72 -93 1 1863 3869 138 83 36 chr1 167545194 167546120 -29649312 + RLTR25A LTR ERVK 1 1028 0 1 1863 292 314 47 38 chr1 167546120 167546197 -29649235 + RSINE1 SINE B4 71 148 -17 1 1863 1115 257 108 19 chr1 167546298 167546627 -29648805 + MTD LTR MaLR 1 362 -12 1 1863 321 140 0 0 chr1 167546633 167546690 -29648742 + (GGA)n Simple_repeat Simple_repeat 1 57 0 1 1863 255 31 0 0 chr1 167547732 167547764 -29647668 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 1 1863 809 147 34 20 chr1 167548100 167548246 -29647186 + B1_Mur4 SINE Alu 1 148 -2 1 1863 1099 137 43 27 chr1 167548945 167549133 -29646299 + B2_Mm2 SINE B2 2 192 -3 1 1863 876 154 0 27 chr1 167549165 167549312 -29646120 + B1_Mus2 SINE Alu 4 146 -1 1 1863 532 262 37 116 chr1 167550463 167550705 -29644727 + L1MC1 LINE L1 6111 6333 0 1 1863 749 272 11 6 chr1 167550710 167550891 -29644541 + B3A SINE B2 1 182 -16 1 1863 452 206 97 22 chr1 167550925 167551059 -29644373 + B1F2 SINE Alu 2 145 -4 1 1863 245 306 38 67 chr1 167551077 167551182 -29644250 - MER5B DNA MER1_type -50 128 27 1 1863 1016 99 7 0 chr1 167551865 167552007 -29643425 + B1_Mus1 SINE Alu 6 148 0 1 1863 263 44 0 100 chr1 167552077 167552095 -29643337 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1863 1065 68 7 40 chr1 167552095 167552247 -29643185 - B1_Mus1 SINE Alu 0 148 2 1 1863 263 44 0 100 chr1 167552247 167552278 -29643154 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1863 857 176 0 14 chr1 167552689 167552833 -29642599 - B1_Mur1 SINE Alu -7 142 1 1 1863 462 264 191 22 chr1 167552840 167553018 -29642414 - B3 SINE B2 -8 208 1 1 1863 315 320 16 39 chr1 167553097 167553224 -29642208 + ID_B1 SINE B4 100 223 -1 1 1863 273 318 0 0 chr1 167553270 167553333 -29642099 + ID4 SINE ID 21 83 0 1 1863 474 279 148 0 chr1 167553776 167553898 -29641534 + B1F1 SINE Alu 1 140 -9 1 1863 243 0 0 0 chr1 167553898 167553925 -29641507 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1863 1250 117 0 11 chr1 167554479 167554496 -29640936 - B2_Mm2 SINE B2 -16 179 164 1 1863 348 24 0 0 chr1 167554496 167554537 -29640895 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1863 1250 117 0 11 chr1 167554537 167554700 -29640732 - B2_Mm2 SINE B2 -32 163 1 1 1863 945 269 24 5 chr1 167554742 167554951 -29640481 - B3 SINE B2 0 216 4 1 1863 298 193 241 0 chr1 167555387 167555470 -29639962 + L1MC4 LINE L1 7456 7558 -484 1 1863 901 73 0 46 chr1 167555483 167555613 -29639819 + B1_Mus1 SINE Alu 24 147 -1 1 1863 253 331 98 6 chr1 167555688 167555852 -29639580 + L1MC4 LINE L1 7692 7870 -172 1 1863 326 225 67 0 chr1 167555885 167555974 -29639458 + L1MC4 LINE L1 7944 8038 -4 1 1863 249 33 0 0 chr1 167557369 167557399 -29638033 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1863 348 24 0 0 chr1 167557399 167557439 -29637993 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1863 607 314 23 33 chr1 167557441 167557655 -29637777 - B4A SINE B4 -78 214 3 1 1863 225 156 52 0 chr1 167557724 167557801 -29637631 + L1M4 LINE L1 4968 5048 -1098 1 1863 717 193 41 30 chr1 167557884 167558074 -29637358 + B3 SINE B2 9 193 -2 1 1863 252 228 87 0 chr1 167558074 167558166 -29637266 + L1M4 LINE L1 5132 5231 -915 1 1863 484 224 161 38 chr1 167558242 167558428 -29637004 + B3 SINE B2 3 211 -5 1 1863 300 261 0 44 chr1 167558450 167558518 -29636914 + B4 SINE B4 218 282 -10 1 1863 319 310 37 37 chr1 167558617 167558751 -29636681 + B1F SINE Alu 16 149 0 1 1863 268 280 44 22 chr1 167558961 167559059 -29636373 + MIR SINE MIR 154 257 -11 1 1863 1261 147 32 14 chr1 167559444 167559665 -29635767 + URR1B DNA MER1_type 1 225 0 1 1863 661 257 0 35 chr1 167560860 167561005 -29634427 + B1F SINE Alu 1 140 -9 1 1863 864 139 0 0 chr1 167561005 167561149 -29634283 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1863 360 140 35 0 chr1 167561153 167561210 -29634222 + HAL1-3A_ME LINE L1 1975 2033 -825 1 1863 2211 172 5 19 chr1 167561333 167561712 -29633720 + RLTR30 LTR ERV1 5 378 -1 1 1863 261 151 0 0 chr1 167562393 167562446 -29632986 + T-rich Low_complexity Low_complexity 1 53 0 1 1863 383 246 50 27 chr1 167562617 167562732 -29632700 + PB1 SINE Alu 9 119 -1 1 1863 382 219 66 9 chr1 167562732 167562838 -29632594 + PB1D7 SINE Alu 1 112 -8 1 1863 298 333 60 15 chr1 167562838 167562881 -29632551 - B4 SINE B4 -70 222 86 1 1863 500 216 0 0 chr1 167562881 167562969 -29632463 - PB1D7 SINE Alu -32 88 1 1 1863 243 0 0 0 chr1 167563226 167563253 -29632179 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1863 189 0 0 0 chr1 167563289 167563310 -29632122 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1863 195 42 0 0 chr1 167563329 167563353 -29632079 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1863 21 100 0 0 chr1 167564349 167564419 -29631013 + GC_rich Low_complexity Low_complexity 1 70 0 1 1863 21 0 0 0 chr1 167564470 167564491 -29630941 + GC_rich Low_complexity Low_complexity 1 21 0 1 1863 400 223 0 78 chr1 167565887 167565989 -29629443 + B1F SINE Alu 41 134 -15 1 1863 508 187 131 0 chr1 167566096 167566203 -29629229 + B1_Mur1 SINE Alu 18 138 -11 1 1863 266 125 21 0 chr1 167567091 167567139 -29628293 + (TATG)n Simple_repeat Simple_repeat 3 51 0 1 1863 1059 60 0 0 chr1 167567204 167567337 -29628095 + B1_Mus2 SINE Alu 13 145 -2 1 1863 371 322 16 33 chr1 167567449 167567571 -29627861 + RSINE1 SINE B4 6 125 -40 1 1863 204 40 0 0 chr1 167567571 167567596 -29627836 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1863 225 0 0 0 chr1 167567596 167567621 -29627811 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1863 796 126 156 0 chr1 167567651 167567786 -29627646 + ORR1D1 LTR MaLR 1 156 -218 1 1863 290 111 133 0 chr1 167567786 167567831 -29627601 + ORR1D1 LTR MaLR 333 383 -1 1 1863 206 81 0 26 chr1 167568122 167568160 -29627272 + (TTTTC)n Simple_repeat Simple_repeat 5 41 0 1 1863 1069 24 0 0 chr1 167568160 167568286 -29627146 - B1_Mus1 SINE Alu 0 148 23 1 1863 403 285 86 21 chr1 167568585 167568725 -29626707 - RSINE1 SINE B4 -4 161 13 1 1863 327 353 0 0 chr1 167568976 167569061 -29626371 + (TCG)n Simple_repeat Simple_repeat 2 86 0 1 1863 207 0 0 0 chr1 167569074 167569097 -29626335 + (CAAAC)n Simple_repeat Simple_repeat 3 25 0 1 1863 22 0 0 0 chr1 167569297 167569319 -29626113 + AT_rich Low_complexity Low_complexity 1 22 0 1 1863 1594 207 148 6 chr1 167569586 167569951 -29625481 - MTD LTR MaLR -1 418 2 1 1863 244 213 45 76 chr1 167570920 167570986 -29624446 - U6 snRNA snRNA -43 64 1 1 1863 29 0 0 0 chr1 167571147 167571176 -29624256 + AT_rich Low_complexity Low_complexity 1 29 0 1 1863 467 259 10 3 chr1 167571176 167571292 -29624140 + B1_Mur1 SINE Alu 27 141 -7 1 1863 658 0 0 0 chr1 167571764 167571836 -29623596 + tRNA-Pro-CCY tRNA tRNA 1 72 -3 1 1863 654 0 0 0 chr1 167572401 167572473 -29622959 - tRNA-Pro-CCG tRNA tRNA -3 72 1 1 1863 272 175 0 0 chr1 167573481 167573521 -29621911 + ID_B1 SINE B4 177 216 -8 1 1863 191 61 0 29 chr1 167573529 167573563 -29621869 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1863 439 194 95 19 chr1 167573820 167573925 -29621507 + PB1D9 SINE Alu 8 120 0 1 1863 372 189 0 0 chr1 167574803 167574877 -29620555 + CT-rich Low_complexity Low_complexity 1 74 0 1 1863 845 210 94 10 chr1 167574908 167575110 -29620322 + ID_B1 SINE B4 3 221 -3 1 1863 561 184 31 0 chr1 167575212 167575310 -29620122 - B3A SINE B2 -97 101 1 1 1863 204 97 0 0 chr1 167575741 167575772 -29619660 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1863 511 303 7 13 chr1 167575772 167575926 -29619506 - RSINE1 SINE B4 -12 153 1 1 1863 449 248 113 0 chr1 167576209 167576342 -29619090 - B1F SINE Alu 0 149 2 1 1863 315 195 20 252 chr1 167576565 167576665 -29618767 + MTC LTR MaLR 36 107 -314 1 1863 234 0 0 0 chr1 167576665 167576691 -29618741 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1863 1203 49 0 0 chr1 167576696 167576839 -29618593 - B1_Mus1 SINE Alu -5 143 1 1 1863 1190 150 10 5 chr1 167576839 167577032 -29618400 - B2_Mm2 SINE B2 0 195 1 1 1863 1025 139 540 52 chr1 167577032 167577237 -29618195 + MTC LTR MaLR 108 421 0 1 1863 1780 197 78 14 chr1 167577295 167577665 -29617767 + MTD LTR MaLR 12 405 -14 1 1863 377 272 0 2 chr1 167577878 167577989 -29617443 - B1F2 SINE Alu -10 110 1 1 1863 291 318 0 34 chr1 167577910 167577998 -29617434 - ID_B1 SINE B4 -67 157 73 1 1863 694 217 14 42 chr1 167578019 167578163 -29617269 + B1_Mur3 SINE Alu 3 142 -7 1 1863 298 289 96 51 chr1 167579227 167579297 -29616135 + MT2B2 LTR ERVL 90 166 -418 1 1863 360 271 88 61 chr1 167579297 167579411 -29616021 + PB1D10 SINE Alu 1 117 0 1 1863 201 74 0 0 chr1 167580229 167580256 -29615176 + (CTG)n Simple_repeat Simple_repeat 1 27 0 1 1863 538 305 43 19 chr1 167580430 167580637 -29614795 - MIR SINE MIR -37 225 14 1 1863 297 243 14 0 chr1 167580751 167580821 -29614611 + ID4 SINE ID 12 82 -1 2 1863 517 248 17 0 chr1 167581724 167581841 -29613591 - ID_B1 SINE B4 -22 202 84 2 1863 226 167 0 65 chr1 167582399 167582476 -29612956 + G-rich Low_complexity Low_complexity 6 77 0 2 1863 300 284 60 148 chr1 167583045 167583083 -29612349 + B4A SINE B4 63 196 -96 2 1863 629 248 36 0 chr1 167583083 167583220 -29612212 + B1F1 SINE Alu 6 147 -2 2 1863 193 367 47 66 chr1 167583302 167583349 -29612083 - L2b LINE L2 -117 3309 3268 2 1863 671 188 145 101 chr1 167583349 167583556 -29611876 + B3 SINE B2 1 216 0 2 1863 238 317 39 113 chr1 167583556 167583870 -29611562 - L2b LINE L2 -159 3267 2955 2 1863 389 294 67 79 chr1 167583885 167584125 -29611307 + MLT1C LTR MaLR 71 307 -160 2 1863 285 348 51 51 chr1 167584154 167584272 -29611160 + MLT1C LTR MaLR 290 407 -60 2 1863 1130 28 7 0 chr1 167584275 167584417 -29611015 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 2 1863 366 256 99 0 chr1 167584474 167584595 -29610837 - B1F1 SINE Alu -16 133 1 2 1863 249 150 0 0 chr1 167584596 167584636 -29610796 + MLT1C LTR MaLR 440 479 -26 2 1863 223 286 129 0 chr1 167584715 167584785 -29610647 - L2b LINE L2 -623 2796 2718 2 1863 2085 21 0 0 chr1 167586210 167586447 -29608985 + L1Md_F2 LINE L1 6345 6581 -1 2 1863 925 114 269 0 chr1 167586567 167586742 -29608690 + URR1A DNA MER1_type 1 222 -4 2 1863 341 291 115 84 chr1 167586825 167586933 -29608499 + B4A SINE B4 6 99 -193 2 1863 2797 57 148 140 chr1 167586933 167587441 -29607991 - RLTR1B LTR ERV1 0 512 1 2 1863 341 291 115 84 chr1 167587441 167587523 -29607909 + B4A SINE B4 100 202 -90 2 1863 712 174 83 0 chr1 167588062 167588183 -29607249 + B1_Mur1 SINE Alu 2 132 -17 2 1863 801 254 14 53 chr1 167588700 167588908 -29606524 - ID_B1 SINE B4 -13 211 12 2 1863 288 77 0 0 chr1 167589428 167589467 -29605965 + (CACGT)n Simple_repeat Simple_repeat 1 39 0 2 1863 336 231 110 11 chr1 167591526 167591649 -29603783 - B1F SINE Alu -7 142 1 2 1863 458 196 66 13 chr1 167592365 167592514 -29602918 - B3 SINE B2 -12 204 9 2 1863 582 264 11 91 chr1 167592561 167592572 -29602860 - RSINE1 SINE B4 -2 163 153 2 1863 186 43 0 0 chr1 167592572 167592595 -29602837 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1863 582 264 11 91 chr1 167592595 167592758 -29602674 - RSINE1 SINE B4 -13 152 4 2 1863 216 0 0 0 chr1 167594301 167594325 -29601107 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1863 797 143 37 22 chr1 167594325 167594461 -29600971 - B1_Mus1 SINE Alu -10 138 1 2 1863 237 98 0 0 chr1 167594717 167594758 -29600674 + (G)n Simple_repeat Simple_repeat 1 41 0 2 1863 1296 99 39 0 chr1 167595342 167595524 -29599908 + B2_Mm2 SINE B2 3 191 -4 2 1863 438 114 0 0 chr1 167596285 167596364 -29599068 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 1863 386 307 0 19 chr1 167596388 167596491 -29598941 - PB1D10 SINE Alu -16 101 1 2 1863 658 229 26 18 chr1 167596737 167596895 -29598537 - RSINE1 SINE B4 -133 159 1 2 1863 595 294 0 34 chr1 167598437 167598585 -29596847 - ID_B1 SINE B4 -80 144 2 2 1863 1017 128 14 0 chr1 167598972 167599113 -29596319 + B1_Mur4 SINE Alu 3 145 -5 2 1863 186 43 0 0 chr1 167599116 167599139 -29596293 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1863 182 340 109 10 chr1 167600033 167600134 -29595298 - L2a LINE L2 -50 3376 3266 2 1863 1143 107 0 0 chr1 167600803 167600972 -29594460 + (GA)n Simple_repeat Simple_repeat 2 170 0 2 1863 215 154 35 103 chr1 167602639 167602697 -29592735 + MIR SINE MIR 40 97 -171 2 1863 321 26 0 0 chr1 167603081 167603119 -29592313 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1863 477 246 48 34 chr1 167603161 167603308 -29592124 + MIR SINE MIR 99 247 -15 2 1863 261 128 0 0 chr1 167603584 167603631 -29591801 + (C)n Simple_repeat Simple_repeat 1 47 0 2 1863 472 210 69 10 chr1 167603755 167603856 -29591576 - PB1D7 SINE Alu -8 112 6 2 1863 198 0 0 0 chr1 167603899 167603921 -29591511 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1863 468 232 40 20 chr1 167603964 167604065 -29591367 - RSINE1 SINE B4 -62 103 1 2 1863 259 233 0 0 chr1 167604065 167604135 -29591297 + L1MB8 LINE L1 6113 6184 0 2 1863 428 262 132 108 chr1 167604928 167605095 -29590337 - B3A SINE B2 0 198 28 2 1863 652 188 102 0 chr1 167605104 167605232 -29590200 - B1_Mus2 SINE Alu -1 146 6 2 1863 226 150 0 0 chr1 167605236 167605276 -29590156 - B2_Mm2 SINE B2 -153 42 3 2 1863 232 314 78 0 chr1 167605499 167605601 -29589831 + MIRc SINE MIR 61 170 -98 2 1863 380 276 73 95 chr1 167605762 167605994 -29589438 + MLT1E2 LTR MaLR 15 241 -386 2 1863 863 106 65 50 chr1 167605999 167606138 -29589294 + B1_Mur4 SINE Alu 1 141 -9 2 1863 288 0 0 0 chr1 167606153 167606185 -29589247 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1863 655 241 45 0 chr1 167606187 167606320 -29589112 + ID_B1 SINE B4 81 219 -5 2 1863 185 277 69 46 chr1 167606468 167606555 -29588877 - L3 LINE CR1 -2304 2185 2097 2 1863 368 215 118 0 chr1 167606892 167606985 -29588447 - RMER30 DNA MER1_type -85 117 14 2 1863 840 117 13 7 chr1 167608786 167608941 -29586491 + (TG)n Simple_repeat Simple_repeat 2 157 0 2 1863 253 339 89 16 chr1 167609322 167609445 -29585987 + MIRc SINE MIR 73 204 -64 2 1863 987 195 39 14 chr1 167609446 167609654 -29585778 + B3 SINE B2 4 216 0 2 1863 201 114 0 43 chr1 167610787 167610833 -29584599 + A-rich Low_complexity Low_complexity 2 45 0 2 1863 840 289 42 8 chr1 167610963 167611228 -29584204 - B4A SINE B4 -18 274 1 2 1863 234 252 15 15 chr1 167611501 167611578 -29583854 + L1M4 LINE L1 5521 5597 -576 2 1863 315 0 0 0 chr1 167612174 167612209 -29583223 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1863 24 0 0 0 chr1 167613393 167613417 -29582015 + AT_rich Low_complexity Low_complexity 1 24 0 2 1863 333 327 58 35 chr1 167613621 167613762 -29581670 + B3A SINE B2 75 216 0 2 1863 654 181 0 0 chr1 167613782 167613887 -29581545 + PB1D9 SINE Alu 2 106 -14 2 1863 770 168 33 47 chr1 167613921 167614071 -29581361 + B1_Mur3 SINE Alu 1 148 -1 2 1863 207 0 0 0 chr1 167615655 167615678 -29579754 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1863 802 247 44 17 chr1 167615854 167616035 -29579397 + B3A SINE B2 5 190 -8 2 1863 893 134 27 27 chr1 167616046 167616192 -29579240 + B1_Mur2 SINE Alu 3 148 -1 2 1863 194 350 95 24 chr1 167616430 167616556 -29578876 - MIRm SINE MIR -136 140 6 2 1863 387 0 0 0 chr1 167616579 167616622 -29578810 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1863 342 0 0 0 chr1 167617646 167617684 -29577748 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1863 867 161 35 0 chr1 167618684 167618827 -29576605 - B1_Mur4 SINE Alu 0 150 3 2 1863 542 301 7 0 chr1 167618883 167619019 -29576413 + MLT1B LTR MaLR 2 138 -252 2 1863 1201 194 14 0 chr1 167619030 167619241 -29576191 - B3 SINE B2 -1 215 2 2 1863 438 108 0 0 chr1 167619350 167619415 -29576017 + (CACG)n Simple_repeat Simple_repeat 1 65 0 2 1863 526 285 139 36 chr1 167619415 167619890 -29575542 + MLT1B LTR MaLR 10 377 -2 2 1863 207 283 92 61 chr1 167620423 167620521 -29574911 - MIRc SINE MIR -5 263 163 2 1863 216 0 0 0 chr1 167621708 167621732 -29573700 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1863 488 330 43 0 chr1 167622031 167622240 -29573192 + L1M5 LINE L1 5572 5789 -335 2 1863 661 201 254 0 chr1 167622371 167622540 -29572892 + B3 SINE B2 1 212 -4 2 1863 736 180 0 22 chr1 167623264 167623446 -29571986 + C-rich Low_complexity Low_complexity 3 180 0 2 1863 872 309 70 3 chr1 167624123 167624425 -29571007 - L3 LINE CR1 -737 3752 3431 2 1863 236 313 0 24 chr1 167624748 167624833 -29570599 + Tigger7 DNA MER2_type 39 121 -2370 2 1863 809 286 90 53 chr1 167624895 167624962 -29570470 + Tigger7 DNA MER2_type 268 337 -2154 2 1863 360 0 0 0 chr1 167624962 167625002 -29570430 + (CAG)n Simple_repeat Simple_repeat 2 41 0 2 1863 809 286 90 53 chr1 167625002 167625255 -29570177 + Tigger7 DNA MER2_type 338 599 -1892 2 1863 364 229 28 94 chr1 167625256 167625362 -29570070 + PB1D7 SINE Alu 1 99 -21 2 1863 399 21 0 0 chr1 167625368 167625416 -29570016 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2 1863 201 129 0 0 chr1 167626199 167626230 -29569202 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1863 578 278 12 36 chr1 167626240 167626408 -29569024 - RSINE1 SINE B4 0 165 2 2 1863 659 236 211 16 chr1 167626423 167626608 -29568824 - ID_B1 SINE B4 -2 222 2 2 1863 186 128 0 0 chr1 167626617 167626656 -29568776 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1863 769 173 64 7 chr1 167626659 167626799 -29568633 - B1_Mur3 SINE Alu 0 149 2 2 1863 230 366 91 7 chr1 167627515 167627658 -29567774 + RMER12 LTR ERVK 696 850 -472 2 1863 450 196 0 0 chr1 167627658 167627750 -29567682 + (CATA)n Simple_repeat Simple_repeat 3 94 0 2 1863 431 302 58 80 chr1 167628715 167628989 -29566443 + MLT1D LTR MaLR 12 279 -226 2 1863 27 29 0 0 chr1 167629752 167629786 -29565646 + AT_rich Low_complexity Low_complexity 1 34 0 2 1863 959 126 37 0 chr1 167629789 167629924 -29565508 - B1_Mus2 SINE Alu -6 141 2 2 1863 332 311 27 72 chr1 167629924 167630015 -29565417 + PB1D10 SINE Alu 12 105 -12 2 1863 231 36 0 0 chr1 167630015 167630043 -29565389 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1863 332 311 27 72 chr1 167630043 167630062 -29565370 + PB1D10 SINE Alu 106 117 0 2 1863 279 0 0 0 chr1 167630961 167630992 -29564440 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1863 471 281 26 63 chr1 167631461 167631651 -29563781 + L2b LINE L2 3052 3234 -141 2 1863 267 368 0 0 chr1 167631762 167631857 -29563575 + B4 SINE B4 2 96 -196 2 1863 471 225 57 90 chr1 167631883 167632005 -29563427 + B4A SINE B4 175 292 0 2 1863 548 288 0 70 chr1 167633427 167633584 -29561848 + RSINE1 SINE B4 20 165 0 2 1863 947 183 5 21 chr1 167633693 167633883 -29561549 + B2_Mm2 SINE B2 2 188 -7 2 1863 943 139 21 0 chr1 167634024 167634168 -29561264 - B1_Mus2 SINE Alu 0 147 1 3 1863 254 236 18 0 chr1 167634193 167634248 -29561184 + MurSatRep1 Unknown Unknown 230 285 -1852 3 1863 856 167 0 28 chr1 167634268 167634410 -29561022 - B1_Mur1 SINE Alu -9 140 3 3 1863 251 263 0 17 chr1 167634960 167635018 -29560414 + polypyrimidine Low_complexity Low_complexity 3 59 0 3 1863 281 240 0 0 chr1 167635018 167635068 -29560364 - ID SINE ID -151 73 24 3 1863 200 250 0 12 chr1 167638225 167638306 -29557126 + GA-rich Low_complexity Low_complexity 3 82 0 3 1863 258 306 98 8 chr1 167639426 167639548 -29555884 + MIRb SINE MIR 9 141 -127 3 1863 213 284 134 0 chr1 167639754 167639821 -29555611 - ID_B1 SINE B4 -67 157 82 3 232 975 226 123 66 chr1 167640797 167641147 -29554285 - MTE2a LTR MaLR 0 379 10 3 1864 252 185 18 36 chr1 167641174 167641230 -29554202 - PB1D7 SINE Alu -65 55 1 3 1864 513 242 21 86 chr1 167641314 167641454 -29553978 - MER2 DNA MER2_type -25 320 190 3 1864 214 315 111 88 chr1 167641456 167641480 -29553952 - B2_Mm2 SINE B2 -10 185 154 3 1864 387 0 0 0 chr1 167641480 167641523 -29553909 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1864 216 0 0 0 chr1 167641523 167641546 -29553886 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1864 214 315 111 88 chr1 167641546 167641561 -29553871 - B2_Mm2 SINE B2 -42 153 2 3 1864 674 246 7 14 chr1 167641561 167641701 -29553731 - RSINE1 SINE B4 -25 140 2 3 1864 398 250 176 6 chr1 167641701 167641866 -29553566 - MER2 DNA MER2_type -146 199 7 3 1864 611 194 28 0 chr1 167642080 167642188 -29553244 + PB1D9 SINE Alu 9 119 -1 3 1864 248 261 247 11 chr1 167642329 167642515 -29552917 + L1MC4 LINE L1 6727 6956 -1086 3 1864 4779 8 0 0 chr1 167642526 167643047 -29552385 + L1Md_A LINE L1 6062 6582 0 3 1864 439 324 44 31 chr1 167643087 167643316 -29552116 + L1MC4 LINE L1 7363 7594 -448 3 1864 269 235 71 15 chr1 167643401 167643505 -29551927 + L1MC4 LINE L1 7943 8030 -12 3 1864 428 225 126 111 chr1 167643505 167643695 -29551737 + B3A SINE B2 2 194 -4 3 1864 451 208 0 0 chr1 167643953 167644030 -29551402 - ID_B1 SINE B4 -34 190 114 3 1864 463 202 42 11 chr1 167644867 167644962 -29550470 + PB1D10 SINE Alu 19 116 -1 3 1864 718 111 59 17 chr1 167645067 167645186 -29550246 - B1_Mur3 SINE Alu -9 140 17 3 1864 942 148 0 0 chr1 167645988 167646150 -29549282 + (GGA)n Simple_repeat Simple_repeat 2 163 0 3 1864 687 151 0 32 chr1 167646979 167647164 -29548268 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1864 297 234 0 0 chr1 167647175 167647286 -29548146 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1864 483 190 0 0 chr1 167647317 167647454 -29547978 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 1864 186 236 35 35 chr1 167649159 167649216 -29546216 + L4 LINE RTE 1305 1361 -668 3 1864 787 178 6 6 chr1 167649313 167649488 -29545944 + CT-rich Low_complexity Low_complexity 3 177 0 3 1864 757 203 11 0 chr1 167649670 167649847 -29545585 + CT-rich Low_complexity Low_complexity 2 180 0 3 1864 653 105 103 17 chr1 167649849 167649965 -29545467 - B1_Mur4 SINE Alu 0 150 25 3 1864 339 292 11 11 chr1 167649972 167650062 -29545370 - PB1D10 SINE Alu -1 116 27 3 1864 366 23 0 0 chr1 167650121 167650164 -29545268 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1864 630 267 13 26 chr1 167650186 167650340 -29545092 - RSINE1 SINE B4 -12 153 2 3 1864 1568 302 73 62 chr1 167650362 167651329 -29544103 + L1M3 LINE L1 4008 4985 -1155 3 1864 436 294 54 12 chr1 167651339 167651489 -29543943 + ID_B1 SINE B4 83 234 -58 3 1864 258 271 108 19 chr1 167651634 167651792 -29543640 + L1M3 LINE L1 5083 5254 -886 3 1864 24 53 0 0 chr1 167651800 167651838 -29543594 + AT_rich Low_complexity Low_complexity 1 38 0 3 1864 389 276 80 70 chr1 167651916 167652103 -29543329 + L1M3 LINE L1 5278 5466 -714 3 1864 566 248 0 46 chr1 167652146 167652277 -29543155 + RLTR18 LTR ERVK 1 125 -491 3 1864 939 226 15 0 chr1 167652277 167652476 -29542956 - B3 SINE B2 -13 203 2 3 1864 416 309 8 38 chr1 167652558 167652689 -29542743 - PB1 SINE Alu 0 127 1 3 1864 788 143 22 8 chr1 167654227 167654361 -29541071 - B1_Mur1 SINE Alu -5 144 9 3 1864 361 275 48 103 chr1 167654230 167654376 -29541056 - B4 SINE B4 -74 218 81 3 1864 251 133 25 51 chr1 167654395 167654474 -29540958 + CT-rich Low_complexity Low_complexity 4 80 0 3 1864 444 242 21 90 chr1 167654477 167654622 -29540810 - ID_B1 SINE B4 -3 221 87 3 1864 27 29 0 0 chr1 167655815 167655849 -29539583 + GC_rich Low_complexity Low_complexity 1 34 0 3 1864 255 225 188 0 chr1 167655902 167655982 -29539450 + MER53 DNA hAT 1 95 -98 3 1864 504 233 15 21 chr1 167656092 167656220 -29539212 - PB1D10 SINE Alu 0 149 21 3 1864 232 203 0 106 chr1 167656178 167656244 -29539188 - B4A SINE B4 -145 147 89 3 1864 683 245 152 9 chr1 167656505 167656715 -29538717 - B4 SINE B4 -12 280 41 3 1864 345 310 100 8 chr1 167657738 167657868 -29537564 - MIRb SINE MIR -101 167 26 3 1864 237 252 168 53 chr1 167658074 167658187 -29537245 - MLT1J LTR MaLR -3 509 384 3 1864 264 299 83 38 chr1 167658311 167658443 -29536989 - MLT1J LTR MaLR -373 139 2 3 1864 181 348 42 42 chr1 167658518 167658638 -29536794 + MIRc SINE MIR 87 206 -62 3 1864 26 0 0 0 chr1 167658833 167658859 -29536573 + AT_rich Low_complexity Low_complexity 1 26 0 3 1864 625 168 40 0 chr1 167658861 167658962 -29536470 - B1_Mur4 SINE Alu -4 146 42 3 1864 1102 312 60 64 chr1 167659119 167659414 -29536018 - Lx8 LINE L1 -198 7275 6960 3 1864 375 23 0 0 chr1 167659414 167659458 -29535974 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1864 1102 312 60 64 chr1 167659458 167659679 -29535753 - Lx8 LINE L1 -514 6959 6761 3 1864 1003 216 34 0 chr1 167660579 167660783 -29534649 - B3 SINE B2 -4 212 2 3 1864 431 257 147 0 chr1 167661111 167661220 -29534212 + RSINE1 SINE B4 11 135 -30 3 1864 423 0 0 0 chr1 167661226 167661273 -29534159 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1864 1031 77 7 47 chr1 167661293 167661434 -29533998 + B1_Mus2 SINE Alu 5 139 -8 3 1864 207 0 0 0 chr1 167661434 167661457 -29533975 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1864 633 240 109 17 chr1 167661464 167661638 -29533794 + B3 SINE B2 27 216 0 3 1864 216 97 0 0 chr1 167661639 167661670 -29533762 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1864 597 289 72 65 chr1 167662054 167662332 -29533100 + B4 SINE B4 1 280 -12 3 1864 266 50 25 0 chr1 167662373 167662413 -29533019 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1864 659 158 287 0 chr1 167662503 167662667 -29532765 - B3 SINE B2 -3 213 3 3 1864 303 93 0 0 chr1 167662667 167662710 -29532722 + (TTG)n Simple_repeat Simple_repeat 1 43 0 3 1864 681 142 0 0 chr1 167662711 167662824 -29532608 + (TTC)n Simple_repeat Simple_repeat 1 113 0 3 1864 7691 78 1 0 chr1 167662864 167664369 -29531063 - L1_Mus1 LINE L1 0 6567 5060 3 1864 2367 196 44 10 chr1 167664371 167664875 -29530557 - RLTR19-int LTR ERVK -4133 2004 1484 3 1864 225 108 0 0 chr1 167664876 167664913 -29530519 + (CCA)n Simple_repeat Simple_repeat 1 37 0 3 1864 320 367 0 0 chr1 167664973 167665120 -29530312 + (CCA)n Simple_repeat Simple_repeat 1 147 0 3 1864 735 238 143 0 chr1 167666032 167666221 -29529211 - B3 SINE B2 0 216 1 3 1864 371 301 88 29 chr1 167666595 167666732 -29528700 - B1F1 SINE Alu -3 146 2 3 1864 251 361 154 44 chr1 167666760 167667053 -29528379 - L4 LINE RTE -466 1563 1239 3 1864 211 310 42 156 chr1 167667086 167667323 -29528109 + B4A SINE B4 27 236 -56 3 1864 372 266 18 9 chr1 167667480 167667590 -29527842 - PB1D10 SINE Alu -6 111 1 3 1864 345 235 0 56 chr1 167667969 167668095 -29527337 - Lx8 LINE L1 -2 7471 7353 3 1864 941 215 24 52 chr1 167668459 167668670 -29526762 - B3 SINE B2 -2 214 10 3 1864 207 277 243 18 chr1 167669177 167669346 -29526086 - L4 LINE RTE -1618 411 205 3 1864 1506 233 97 11 chr1 167669557 167669930 -29525502 - MTD LTR MaLR -14 405 1 3 1864 241 268 36 89 chr1 167669963 167670131 -29525301 + L1_Rod LINE L1 2114 2272 -3575 3 1864 692 237 83 48 chr1 167670439 167670767 -29524665 - MT2A LTR ERVL -8 525 184 3 1864 285 308 25 13 chr1 167670897 167670976 -29524456 - MLT1J2 LTR MaLR -289 159 80 3 1864 186 207 38 124 chr1 167671124 167671229 -29524203 + L4 LINE RTE 618 713 -1316 3 1864 274 280 27 107 chr1 167671300 167671412 -29524020 + MT2A LTR ERVL 155 257 -344 3 1864 741 178 8 37 chr1 167671316 167671450 -29523982 + B1_Mur4 SINE Alu 11 140 -10 3 1864 303 219 94 0 chr1 167671882 167671946 -29523486 + MT2A LTR ERVL 362 431 -102 3 1864 216 149 0 0 chr1 167672579 167672626 -29522806 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1864 225 0 0 0 chr1 167672658 167672683 -29522749 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1864 10136 123 12 8 chr1 167673611 167675947 -29519485 - Lx LINE L1 0 6654 4314 3 1864 5912 73 22 1 chr1 167675940 167677370 -29518062 - L1VL2 LINE L1 -1922 1693 228 3 1864 305 24 24 0 chr1 167677517 167677559 -29517873 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 1864 924 122 13 45 chr1 167677618 167677773 -29517659 + B1_Mur4 SINE Alu 1 150 0 3 1864 992 209 77 0 chr1 167678712 167678894 -29516538 + B3 SINE B2 15 210 -6 3 1864 979 126 7 0 chr1 167678915 167679058 -29516374 + B2_Mm1t SINE B2 2 145 -48 3 1864 282 290 51 131 chr1 167679044 167679258 -29516174 + RLTR41 LTR ERV1 193 389 -57 3 1864 245 300 43 0 chr1 167679313 167679383 -29516049 - MT2A LTR ERVL -386 147 75 3 1864 820 126 0 0 chr1 167679442 167679561 -29515871 - B1_Mur3 SINE Alu -1 148 30 3 1864 236 273 48 39 chr1 167679490 167679593 -29515839 - RLTR25B LTR ERVK -530 498 395 3 1864 766 259 29 10 chr1 167682516 167682723 -29512709 + B3 SINE B2 1 211 -5 3 1864 261 0 0 0 chr1 167683282 167683311 -29512121 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1864 477 34 0 0 chr1 167683311 167683369 -29512063 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1864 2392 94 48 17 chr1 167683417 167683774 -29511658 + MTB_Mm LTR MaLR 32 399 -8 3 1864 445 274 109 6 chr1 167683930 167684095 -29511337 - L1M5 LINE L1 -368 5805 5624 3 1864 4160 119 140 5 chr1 167684135 167684784 -29510648 + RMER19A LTR ERVK 1 737 0 3 1864 242 279 14 29 chr1 167685777 167685847 -29509585 - ID4 SINE ID -13 70 2 4 1864 201 283 0 36 chr1 167686030 167686085 -29509347 + L2b LINE L2 3102 3154 -221 4 1864 452 0 59 0 chr1 167686277 167686345 -29509087 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1864 296 262 25 0 chr1 167686362 167686442 -29508990 - ID4 SINE ID 0 83 2 4 1864 180 83 111 0 chr1 167686523 167686559 -29508873 - L2 LINE L2 -611 2808 2769 4 1864 886 113 42 7 chr1 167686698 167686841 -29508591 - B1_Mur3 SINE Alu -1 148 1 4 1864 734 260 0 23 chr1 167687150 167687327 -29508105 + B3 SINE B2 44 216 0 4 1864 330 26 0 0 chr1 167687331 167687370 -29508062 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 4 1864 395 242 141 8 chr1 167687410 167687531 -29507901 - B1F SINE Alu -12 137 1 4 1864 717 229 225 37 chr1 167687749 167688037 -29507395 - RLTR15 LTR ERVK -17 342 1 4 1864 644 219 7 7 chr1 167688037 167688175 -29507257 - MYSERV-int LTR ERVK 0 6550 6413 4 1864 278 268 57 68 chr1 167688374 167688480 -29506952 + MYSERV16_I-int LTR ERVK 378 485 -1841 4 1864 198 0 0 0 chr1 167688480 167688502 -29506930 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1864 278 268 57 68 chr1 167688502 167688587 -29506845 + MYSERV16_I-int LTR ERVK 486 566 -1760 4 1864 232 316 76 57 chr1 167688599 167688757 -29506675 - L2b LINE L2 -67 3359 3199 4 1864 430 196 196 0 chr1 167688800 167688897 -29506535 - PB1D9 SINE Alu -1 119 4 4 1864 566 227 0 43 chr1 167688906 167689044 -29506388 - RCHARR1 DNA MER1_type -1 973 842 4 1864 1503 105 0 4 chr1 167689044 167690023 -29505409 + (TG)n Simple_repeat Simple_repeat 1 975 0 4 1864 968 223 49 86 chr1 167690048 167690360 -29505072 + RLTR11A LTR ERVK 192 471 -106 4 1864 441 0 0 0 chr1 167690360 167690409 -29505023 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1864 968 209 48 79 chr1 167690409 167690448 -29504984 + RLTR11A LTR ERVK 448 494 -34 4 1864 188 333 74 56 chr1 167690460 167690568 -29504864 - MIR3 SINE MIR -54 154 45 4 1864 2101 205 26 2 chr1 167691094 167691520 -29503912 - RLTR28 LTR ERVL 0 524 89 4 1864 915 128 78 63 chr1 167691788 167691979 -29503453 + B2_Mm2 SINE B2 2 195 0 4 1864 2400 124 34 121 chr1 167691996 167692492 -29502940 - RLTR11B LTR ERVK 0 453 1 4 1864 498 79 0 0 chr1 167692503 167692579 -29502853 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1864 2278 40 33 0 chr1 167692810 167693083 -29502349 + L1_Mus1 LINE L1 6281 6562 -5 4 1864 202 222 47 16 chr1 167693621 167693685 -29501747 + MIR SINE MIR 74 139 -123 4 1864 290 299 219 1 chr1 167694886 167695058 -29500374 - MIRb SINE MIR -30 232 36 4 1864 579 251 48 129 chr1 167695183 167695494 -29499938 + B4 SINE B4 1 286 -6 4 1864 238 300 0 0 chr1 167695591 167695641 -29499791 + Charlie8 DNA MER1_type 121 170 -2258 4 1864 227 299 43 65 chr1 167695960 167696053 -29499379 - MIRb SINE MIR -95 173 83 4 1864 409 317 97 51 chr1 167696506 167696702 -29498730 + ID_B1 SINE B4 20 224 0 4 1864 1523 67 5 5 chr1 167696889 167697083 -29498349 - B2_Mm2 SINE B2 -1 194 1 4 1864 537 184 0 0 chr1 167697428 167697586 -29497846 + CT-rich Low_complexity Low_complexity 3 160 0 4 1864 813 150 0 0 chr1 167697591 167697771 -29497661 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1864 683 176 0 4 chr1 167697773 167697942 -29497490 + CT-rich Low_complexity Low_complexity 1 168 0 4 1864 1050 100 0 0 chr1 167697942 167698122 -29497310 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1864 683 161 0 6 chr1 167698122 167698182 -29497250 + polypyrimidine Low_complexity Low_complexity 1 60 0 4 1864 864 138 0 0 chr1 167698194 167698507 -29496925 + (TCC)n Simple_repeat Simple_repeat 1 313 0 4 1864 406 278 150 0 chr1 167698537 167698670 -29496762 + B4A SINE B4 2 154 -138 4 1864 522 43 0 0 chr1 167698725 167698794 -29496638 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1864 497 282 74 39 chr1 167699074 167699277 -29496155 - B3 SINE B2 0 216 7 4 1864 377 322 78 0 chr1 167701126 167701241 -29494191 + ID_B1 SINE B4 101 224 0 4 1864 228 336 104 27 chr1 167701754 167701974 -29493458 - MIR SINE MIR -14 248 12 4 1864 304 22 44 0 chr1 167702220 167702265 -29493167 + (TGGGGG)n Simple_repeat Simple_repeat 2 48 0 4 1864 241 256 63 13 chr1 167704701 167704780 -29490652 + ID4 SINE ID 1 83 0 4 1864 396 294 63 23 chr1 167704999 167705173 -29490259 + B3A SINE B2 2 182 -16 4 1864 219 311 162 0 chr1 167705950 167706024 -29489408 - PB1D10 SINE Alu -30 87 2 4 1864 330 26 0 0 chr1 167706733 167706772 -29488660 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1864 377 239 129 11 chr1 167707712 167707805 -29487627 + RSINE1 SINE B4 3 106 -59 4 1864 207 236 0 35 chr1 167708677 167708704 -29486728 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1864 528 59 0 0 chr1 167708704 167708772 -29486660 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 4 1864 207 236 0 35 chr1 167708772 167708801 -29486631 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1864 186 272 80 94 chr1 167709572 167709715 -29485717 + MIRb SINE MIR 49 198 -70 4 1864 469 188 0 0 chr1 167709719 167709799 -29485633 + PB1D10 SINE Alu 30 109 -8 4 1864 22 35 0 0 chr1 167710028 167710057 -29485375 + AT_rich Low_complexity Low_complexity 1 29 0 4 1864 401 0 20 0 chr1 167710297 167710346 -29485086 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1864 190 289 89 0 chr1 167710376 167710421 -29485011 + MIR SINE MIR 28 76 -186 4 1864 192 111 0 0 chr1 167710731 167710767 -29484665 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1864 245 338 5 8 chr1 167711416 167711496 -29483936 - MIR SINE MIR -167 109 31 4 1864 241 359 140 6 chr1 167712243 167712400 -29483032 + MIRc SINE MIR 43 220 -48 4 1864 310 312 69 23 chr1 167712826 167712957 -29482475 - MLT1K LTR MaLR -81 514 378 4 1864 23 0 0 0 chr1 167713010 167713033 -29482399 + AT_rich Low_complexity Low_complexity 1 23 0 4 1864 279 312 101 85 chr1 167713271 167713460 -29481972 + MLT1E3 LTR MaLR 304 495 -158 4 1864 301 361 19 0 chr1 167713658 167713766 -29481666 + MLT1E3 LTR MaLR 515 624 0 4 1864 185 0 40 0 chr1 167713976 167714001 -29481431 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 1864 261 284 60 0 chr1 167714002 167714069 -29481363 - ID_B1 SINE B4 -4 220 150 4 1864 585 256 8 0 chr1 167714142 167714263 -29481169 + B3A SINE B2 1 122 -76 4 1864 516 274 130 48 chr1 167714443 167714650 -29480782 + ID_B1 SINE B4 1 224 0 4 1864 741 53 0 0 chr1 167714672 167714767 -29480665 + B1_Mus2 SINE Alu 41 135 -12 4 1864 94 90 0 0 chr1 167714767 167715022 -29480410 + AT_rich Low_complexity Low_complexity 1 255 0 4 1864 459 263 93 1 chr1 167715260 167715422 -29480010 - L1M5 LINE L1 -717 5445 5269 4 1864 1506 53 5 16 chr1 167715422 167715612 -29479820 + B2_Mm1a SINE B2 2 189 -4 4 1864 383 333 152 32 chr1 167715612 167715976 -29479456 - L1M5 LINE L1 -883 5279 4848 4 1864 456 200 0 0 chr1 167715991 167716071 -29479361 - 5S rRNA rRNA -30 91 12 4 1864 1602 262 99 21 chr1 167716195 167717158 -29478274 - L1MB7 LINE L1 -44 6140 5102 4 1864 565 189 11 33 chr1 167717254 167717527 -29477905 + (TATG)n Simple_repeat Simple_repeat 1 266 0 4 1864 470 180 30 30 chr1 167717529 167717763 -29477669 + (TG)n Simple_repeat Simple_repeat 1 234 0 4 1864 509 257 108 0 chr1 167717774 167717922 -29477510 - RSINE1 SINE B4 0 165 2 4 1864 507 241 55 28 chr1 167718120 167718265 -29477167 - B1F SINE Alu 0 149 1 4 1864 442 295 19 0 chr1 167718334 167718439 -29476993 + PB1D10 SINE Alu 6 112 -5 4 1864 184 192 211 0 chr1 167718543 167718595 -29476837 - MIR SINE MIR -72 136 74 4 1864 749 201 7 7 chr1 167721923 167722063 -29473369 + B1F2 SINE Alu 5 144 -5 4 1864 291 246 10 36 chr1 167722805 167722895 -29472537 - ID4_ SINE ID -67 85 1 4 1864 236 309 131 0 chr1 167722965 167723049 -29472383 - PB1 SINE Alu -32 95 1 4 1864 217 202 88 85 chr1 167723830 167723918 -29471514 + MIRc SINE MIR 49 137 -131 4 1864 417 297 21 14 chr1 167724395 167724535 -29470897 + ID_B1 SINE B4 81 221 -3 4 1864 632 236 46 46 chr1 167725184 167725357 -29470075 - B2_Mm2 SINE B2 -8 187 15 4 1864 419 35 18 0 chr1 167726246 167726303 -29469129 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1864 1193 221 37 19 chr1 167728353 167728621 -29466811 + B4A SINE B4 2 274 -18 4 1864 450 0 0 0 chr1 167728624 167728674 -29466758 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1864 1341 169 4 9 chr1 167728906 167729133 -29466299 + URR1A DNA MER1_type 1 226 0 4 1864 470 246 155 56 chr1 167729317 167729459 -29465973 - RSINE1 SINE B4 0 165 10 4 1864 1157 192 9 14 chr1 167729858 167730069 -29465363 + B3 SINE B2 1 210 -6 4 1864 241 250 0 19 chr1 167730100 167730153 -29465279 + ID SINE ID 2 53 -171 4 1864 653 141 20 0 chr1 167730149 167730248 -29465184 + B1_Mur3 SINE Alu 49 149 0 4 1864 1298 240 139 10 chr1 167730256 167730652 -29464780 + Lx6 LINE L1 7014 7460 0 4 1864 929 169 7 0 chr1 167730922 167731070 -29464362 + B1_Mur3 SINE Alu 1 149 0 4 1864 952 266 70 42 chr1 167731128 167731387 -29464045 + B4 SINE B4 10 275 -17 4 1864 309 51 0 0 chr1 167731390 167731429 -29464003 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1864 573 281 24 48 chr1 167731451 167731619 -29463813 - MLT1C LTR MaLR -59 408 245 4 1864 448 313 18 30 chr1 167732998 167733166 -29462266 - MER58A DNA MER1_type -24 200 35 4 1864 22 0 0 0 chr1 167734091 167734113 -29461319 + AT_rich Low_complexity Low_complexity 1 22 0 4 1864 564 325 65 6 chr1 167734589 167734759 -29460673 - MER20 DNA MER1_type -10 209 30 4 1864 452 318 116 9 chr1 167735096 167735321 -29460111 + MIRb SINE MIR 20 268 0 5 1864 316 345 80 36 chr1 167737643 167737944 -29457488 - L2a LINE L2 0 3426 3113 5 1864 180 111 0 0 chr1 167738561 167738588 -29456844 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1864 180 0 0 0 chr1 167738856 167738876 -29456556 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1864 370 301 22 96 chr1 167738924 167739001 -29456431 + MER2B DNA MER2_type 170 248 -88 5 1864 946 186 22 11 chr1 167739001 167739186 -29456246 - B2_Mm2 SINE B2 -7 188 2 5 1864 370 301 22 96 chr1 167739186 167739244 -29456188 + MER2B DNA MER2_type 249 294 -42 5 1864 393 39 0 0 chr1 167739352 167739403 -29456029 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1864 358 252 117 8 chr1 167739501 167739629 -29455803 - MIRb SINE MIR -76 192 51 5 1864 1034 8 8 0 chr1 167739636 167739765 -29455667 - L1Md_A LINE L1 0 6582 6453 5 1864 977 19 0 0 chr1 167739766 167739873 -29455559 - U6 snRNA snRNA 0 107 1 5 1864 1351 63 11 6 chr1 167739874 167740050 -29455382 - B2_Mm1a SINE B2 -15 178 2 5 1864 866 258 61 32 chr1 167740431 167740711 -29454721 - B4A SINE B4 0 292 5 5 1864 21 0 0 0 chr1 167741201 167741222 -29454210 + AT_rich Low_complexity Low_complexity 1 21 0 5 1864 210 71 0 0 chr1 167741927 167741955 -29453477 + (CAACC)n Simple_repeat Simple_repeat 2 29 0 5 1864 314 306 57 24 chr1 167741986 167742110 -29453322 + MIR SINE MIR 32 159 -103 5 1864 1738 262 83 23 chr1 167742966 167743645 -29451787 - L1MB2 LINE L1 -9 6162 5444 5 1864 437 239 13 149 chr1 167743688 167743829 -29451603 + B1F2 SINE Alu 22 148 -1 5 1864 1443 257 73 27 chr1 167745411 167745851 -29449581 + MER31A LTR ERV1 25 484 -1 5 1864 219 275 114 8 chr1 167745888 167746019 -29449413 - MIR SINE MIR -1 267 111 5 1864 1192 75 0 0 chr1 167746224 167746370 -29449062 + B1_Mus1 SINE Alu 3 148 0 5 1864 264 100 0 0 chr1 167746370 167746410 -29449022 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1864 503 256 132 0 chr1 167748918 167749047 -29446385 + RSINE1 SINE B4 1 146 -19 5 1864 444 250 168 7 chr1 167749153 167749319 -29446113 + MIRb SINE MIR 21 215 -53 5 1864 188 0 74 0 chr1 167749330 167749357 -29446075 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 5 1864 444 104 0 0 chr1 167750163 167750230 -29445202 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1864 438 296 35 86 chr1 167750850 167750899 -29444533 + ORSL-2b DNA Tip100 237 282 -226 5 1864 521 298 88 19 chr1 167750899 167751159 -29444273 + B4 SINE B4 3 280 -12 5 1864 327 25 0 0 chr1 167751166 167751206 -29444226 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1864 438 296 35 86 chr1 167751206 167751403 -29444029 + ORSL-2b DNA Tip100 290 476 -32 5 1864 261 0 0 0 chr1 167752936 167752965 -29442467 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 5 1864 311 327 9 18 chr1 167753120 167753232 -29442200 + PB1 SINE Alu 10 120 -7 5 1864 751 226 27 173 chr1 167753257 167753482 -29441950 + B3A SINE B2 1 192 -3 5 1864 259 260 43 58 chr1 167753575 167753714 -29441718 - MIR SINE MIR -1 261 125 5 1864 360 0 0 0 chr1 167754715 167754755 -29440677 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1864 581 293 50 28 chr1 167754847 167755026 -29440406 + ORR1D1 LTR MaLR 192 374 0 5 1864 236 325 12 24 chr1 167755032 167755114 -29440318 - MIRb SINE MIR -58 210 130 5 1864 22 35 0 0 chr1 167755397 167755426 -29440006 + AT_rich Low_complexity Low_complexity 1 29 0 5 1864 571 47 12 0 chr1 167755426 167755511 -29439921 + L1Md_F2 LINE L1 6497 6582 0 5 1864 1297 83 6 0 chr1 167755529 167755698 -29439734 + B2_Mm2 SINE B2 2 171 -24 5 1864 520 140 152 48 chr1 167756514 167756619 -29438813 - PB1D10 SINE Alu 0 117 2 5 1864 1194 68 7 0 chr1 167756646 167756793 -29438639 + B1_Mus1 SINE Alu 1 148 0 5 1864 229 250 0 81 chr1 167756812 167756899 -29438533 - L1MC5 LINE L1 -275 7686 7607 5 1864 293 260 29 39 chr1 167757029 167757133 -29438299 - L1MC5 LINE L1 -495 7466 7364 5 1864 1169 279 33 0 chr1 167757836 167758112 -29437320 - B4 SINE B4 0 292 8 5 1864 222 37 0 0 chr1 167759005 167759032 -29436400 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1864 459 92 0 0 chr1 167759384 167759449 -29435983 + (TATG)n Simple_repeat Simple_repeat 2 66 0 5 1864 268 328 89 42 chr1 167759852 167759898 -29435534 - B3 SINE B2 -16 200 1 5 1864 709 245 0 14 chr1 167759898 167760043 -29435389 - RSINE1 SINE B4 -21 144 2 5 1864 747 238 27 78 chr1 167761200 167761419 -29434013 - B3 SINE B2 -7 209 2 5 1864 239 226 161 0 chr1 167761443 167761505 -29433927 + ID2 SINE ID 1 72 -11 5 1864 355 301 38 32 chr1 167761671 167761829 -29433603 + L1ME4a LINE L1 5960 6118 -6 5 1864 418 294 72 45 chr1 167762025 167762246 -29433186 - L2 LINE L2 -1025 2394 2168 5 1864 22 0 0 0 chr1 167762690 167762712 -29432720 + AT_rich Low_complexity Low_complexity 1 22 0 5 1864 290 276 26 0 chr1 167763042 167763118 -29432314 - ID4_ SINE ID -5 78 1 5 1864 205 366 0 11 chr1 167765107 167765201 -29430231 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 5 1864 195 42 0 0 chr1 167765385 167765409 -29430023 + (CAATA)n Simple_repeat Simple_repeat 5 28 0 5 1864 846 236 174 30 chr1 167765447 167765752 -29429680 - Lx7 LINE L1 -312 7384 7036 5 1864 196 53 0 50 chr1 167765893 167765933 -29429499 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 1864 914 147 7 0 chr1 167765939 167766082 -29429350 + B1_Mus2 SINE Alu 3 146 -1 5 1864 387 227 13 126 chr1 167766120 167766271 -29429161 + RSINE1 SINE B4 32 165 0 5 1864 367 227 184 10 chr1 167768241 167768339 -29427093 + PB1D7 SINE Alu 2 116 -4 5 1864 900 234 10 34 chr1 167768539 167768747 -29426685 - B3 SINE B2 -6 210 8 5 1864 243 0 0 0 chr1 167768776 167768803 -29426629 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1864 201 176 0 0 chr1 167769021 167769055 -29426377 + T-rich Low_complexity Low_complexity 1 34 0 5 1864 551 161 173 24 chr1 167769187 167769314 -29426118 - B1_Mus2 SINE Alu -1 146 1 5 1864 222 297 0 0 chr1 167770189 167770290 -29425142 + (CAT)n Simple_repeat Simple_repeat 1 101 0 5 1864 318 26 0 0 chr1 167770505 167770544 -29424888 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1864 272 48 0 23 chr1 167771634 167771677 -29423755 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 5 1864 202 87 0 42 chr1 167771948 167771996 -29423436 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 5 1864 426 108 0 0 chr1 167772043 167772108 -29423324 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1865 311 274 73 57 chr1 167772160 167772284 -29423148 - PB1 SINE Alu 0 127 2 5 1865 35 0 0 0 chr1 167773538 167773573 -29421859 + AT_rich Low_complexity Low_complexity 1 35 0 5 1865 229 262 0 15 chr1 167773703 167773769 -29421663 + C-rich Low_complexity Low_complexity 6 70 0 5 1865 536 286 133 39 chr1 167776236 167776491 -29418941 - B4A SINE B4 -8 284 6 5 1865 21 0 0 0 chr1 167776515 167776536 -29418896 + AT_rich Low_complexity Low_complexity 1 21 0 5 1865 253 282 13 78 chr1 167776590 167776667 -29418765 - ID4_ SINE ID -7 76 5 5 1865 255 160 0 57 chr1 167776932 167776985 -29418447 - ID_B1 SINE B4 0 224 175 5 1865 332 158 64 26 chr1 167776948 167777026 -29418406 - PB1D10 SINE Alu -13 104 24 5 1865 251 265 14 14 chr1 167777027 167777096 -29418336 - ID4_ SINE ID -10 73 5 5 1865 398 324 48 48 chr1 167777344 167777571 -29417861 + MIRc SINE MIR 13 239 -29 5 1865 474 191 30 44 chr1 167777744 167777876 -29417556 - B1F2 SINE Alu 0 149 11 5 1865 474 311 7 7 chr1 167777977 167778126 -29417306 + RSINE1 SINE B4 15 163 -2 5 1865 207 69 0 0 chr1 167778266 167778295 -29417137 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1865 297 0 0 0 chr1 167781672 167781705 -29413727 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 5 1865 716 77 0 30 chr1 167781908 167782042 -29413390 + (GA)n Simple_repeat Simple_repeat 2 131 0 5 1865 191 391 17 52 chr1 167782247 167782363 -29413069 - MIRb SINE MIR -80 188 77 5 1865 297 0 0 0 chr1 167782708 167782741 -29412691 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1865 607 290 58 11 chr1 167783383 167783571 -29411861 + ID_B1 SINE B4 8 204 -20 5 1865 380 208 178 0 chr1 167784408 167784509 -29410923 - B1F1 SINE Alu -28 121 3 5 1865 557 189 182 6 chr1 167787099 167787269 -29408163 + B3 SINE B2 5 204 -12 5 1865 416 246 179 8 chr1 167787305 167787428 -29408004 - RSINE1 SINE B4 0 165 22 5 1865 1166 51 0 0 chr1 167790319 167790457 -29404975 + B1_Mus1 SINE Alu 2 139 -9 5 1865 207 0 0 0 chr1 167790457 167790480 -29404952 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1865 310 143 36 0 chr1 167793347 167793403 -29402029 + B3A SINE B2 3 60 -138 5 1865 303 49 0 0 chr1 167794945 167794986 -29400446 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 1865 21 0 0 0 chr1 167795345 167795366 -29400066 + AT_rich Low_complexity Low_complexity 1 21 0 5 1865 36 40 0 0 chr1 167797513 167797563 -29397869 + AT_rich Low_complexity Low_complexity 1 50 0 5 1865 185 0 40 0 chr1 167803632 167803657 -29391775 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1865 204 40 0 0 chr1 167804694 167804719 -29390713 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1865 297 51 0 0 chr1 167805224 167805263 -29390169 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1865 186 217 0 0 chr1 167805411 167805480 -29389952 + A-rich Low_complexity Low_complexity 1 69 0 5 1865 195 100 0 0 chr1 167805576 167805606 -29389826 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1865 3628 284 108 54 chr1 167807510 167808110 -29387322 + Lx8 LINE L1 5664 6295 -1178 6 1865 3577 156 91 30 chr1 167808110 167808822 -29386610 + RMER6A LTR ERVK 1 756 0 6 1865 3628 284 108 54 chr1 167808822 167809935 -29385497 + Lx8 LINE L1 6296 7470 -3 6 1865 910 178 160 11 chr1 167810915 167811102 -29384330 + B3 SINE B2 1 215 -1 6 1865 758 184 42 14 chr1 167811139 167811282 -29384150 + B1_Mur1 SINE Alu 1 147 -2 6 1865 314 262 0 46 chr1 167811356 167811452 -29383980 - MER33 DNA MER1_type -99 110 1 6 1865 1801 173 79 38 chr1 167811622 167812013 -29383419 + MTD LTR MaLR 13 419 0 6 1865 204 40 0 0 chr1 167812025 167812050 -29383382 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 6 1865 369 0 0 0 chr1 167814139 167814180 -29381252 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1865 336 304 120 29 chr1 167814392 167814671 -29380761 - L1M4 LINE L1 -754 5425 5134 6 1865 524 250 139 0 chr1 167814705 167814849 -29380583 - B3A SINE B2 -28 170 7 6 1865 353 309 129 10 chr1 167814871 167815235 -29380197 - L1M4 LINE L1 -1015 5131 4731 6 1865 702 295 44 28 chr1 167815466 167815714 -29379718 + B4 SINE B4 23 274 -18 6 1865 424 302 90 92 chr1 167815776 167816473 -29378959 - L1M4 LINE L1 -2106 4040 3345 6 1865 264 293 93 28 chr1 167816476 167816625 -29378807 + L1MB7 LINE L1 5611 5771 -407 6 1865 2585 43 58 47 chr1 167816625 167816967 -29378465 + ORR1A1 LTR MaLR 1 346 0 6 1865 264 293 93 28 chr1 167816967 167817031 -29378401 + L1MB7 LINE L1 5772 5838 -340 6 1865 238 269 15 0 chr1 167817171 167817238 -29378194 + L1MB7 LINE L1 6063 6130 -54 6 1865 569 40 13 0 chr1 167817351 167817427 -29378005 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 6 1865 468 242 25 8 chr1 167817463 167817584 -29377848 - B1_Mus1 SINE Alu -25 123 1 6 1865 394 249 69 111 chr1 167817584 167817658 -29377774 - L1M4 LINE L1 -2856 3290 3210 6 1865 1161 41 14 0 chr1 167817658 167817803 -29377629 - B1_Mus2 SINE Alu 0 147 1 6 1865 394 249 69 111 chr1 167817803 167817945 -29377487 - L1M4 LINE L1 -2937 3209 3084 6 1865 203 125 0 24 chr1 167817967 167818008 -29377424 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 6 1865 751 224 14 0 chr1 167818469 167818612 -29376820 + B1_Mur1 SINE Alu 2 146 -3 6 1865 876 197 197 0 chr1 167818624 167818802 -29376630 + B3 SINE B2 3 215 -1 6 1865 229 242 143 16 chr1 167818957 167819083 -29376349 - L1M4 LINE L1 -3586 2560 2419 6 1865 300 135 77 0 chr1 167819383 167819435 -29375997 - B1_Mus1 SINE Alu -92 56 1 6 1865 198 0 0 0 chr1 167819861 167819883 -29375549 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1865 8463 53 4 7 chr1 167819883 167820955 -29374477 - L1_Mm LINE L1 -1155 4728 3660 6 1865 859 145 18 12 chr1 167820956 167821123 -29374309 - B2_Mm2 SINE B2 -27 168 1 6 1865 572 164 123 72 chr1 167821189 167821327 -29374105 + B1_Mur1 SINE Alu 5 149 0 6 1865 414 0 0 0 chr1 167821362 167821408 -29374024 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1865 486 0 0 0 chr1 167821434 167821488 -29373944 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1865 472 335 92 14 chr1 167821550 167821768 -29373664 - B4A SINE B4 -18 274 40 6 1865 219 69 0 0 chr1 167822240 167822269 -29373163 + (CCCA)n Simple_repeat Simple_repeat 4 32 0 6 1865 423 170 327 9 chr1 167822277 167822390 -29373042 - B1_Mur4 SINE Alu -1 149 1 6 1865 687 187 44 7 chr1 167822405 167822540 -29372892 + B1_Mus2 SINE Alu 1 140 -7 6 1865 486 254 49 0 chr1 167822560 167822682 -29372750 - B1_Mur1 SINE Alu -13 136 9 6 1865 1544 290 95 2 chr1 167822685 167823224 -29372208 + Lx8 LINE L1 6700 7288 -185 6 1865 318 50 0 0 chr1 167823268 167823308 -29372124 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1865 743 190 199 11 chr1 167823646 167823827 -29371605 + B3 SINE B2 1 215 -1 6 1865 676 259 0 0 chr1 167823852 167823995 -29371437 + B1_Mur3 SINE Alu 1 143 -6 6 1865 198 0 0 0 chr1 167824563 167824585 -29370847 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1865 297 0 0 0 chr1 167824585 167824617 -29370815 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1865 1131 204 184 19 chr1 167824627 167824947 -29370485 + ORR1D1 LTR MaLR 2 374 0 6 1865 549 204 120 46 chr1 167825341 167825502 -29369930 - B3 SINE B2 -6 210 52 6 1865 526 183 11 0 chr1 167825501 167825594 -29369838 - B1_Mur2 SINE Alu -55 94 1 6 1865 649 220 50 0 chr1 167825773 167825914 -29369518 - B1_Mur2 SINE Alu -1 148 1 6 1865 246 62 0 0 chr1 167828201 167828233 -29367199 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1865 396 294 7 75 chr1 167828234 167828381 -29367051 - RSINE1 SINE B4 -2 163 27 6 1865 623 268 137 0 chr1 167828979 167829169 -29366263 - B3 SINE B2 0 216 1 6 1865 285 365 0 9 chr1 167829175 167829283 -29366149 - PB1D10 SINE Alu -10 107 1 6 1865 254 353 73 22 chr1 167829428 167829449 -29365983 - B1_Mur3 SINE Alu -1 148 6 6 1865 413 278 52 0 chr1 167829449 167829564 -29365868 - ID_B1 SINE B4 -17 207 87 6 1865 285 253 0 26 chr1 167830219 167830296 -29365136 + GA-rich Low_complexity Low_complexity 1 75 0 6 1865 283 255 0 18 chr1 167830669 167830725 -29364707 - RSINE1 SINE B4 -80 85 31 6 1865 1198 96 102 0 chr1 167831648 167831825 -29363607 + B2_Mm2 SINE B2 1 195 0 6 1865 342 232 39 39 chr1 167831975 167832078 -29363354 + MTD LTR MaLR 46 148 -271 6 1865 557 208 155 12 chr1 167832093 167832254 -29363178 + MTD LTR MaLR 222 405 -14 6 1865 466 299 58 90 chr1 167832512 167832857 -29362575 + Lx8 LINE L1 7111 7444 -29 6 1865 284 336 25 74 chr1 167832934 167833056 -29362376 - PB1D10 SINE Alu 0 117 2 6 1865 765 249 141 0 chr1 167833642 167833827 -29361605 - B3 SINE B2 -5 211 1 6 1865 576 323 1 6 chr1 167834541 167834790 -29360642 - L1ME1 LINE L1 -343 6016 5768 6 1865 281 318 141 42 chr1 167834863 167835126 -29360306 - L1ME1 LINE L1 -540 5639 5351 6 1865 23 78 0 0 chr1 167835337 167835388 -29360044 + AT_rich Low_complexity Low_complexity 1 51 0 6 1865 246 191 0 0 chr1 167835454 167835501 -29359931 - L1ME1 LINE L1 -1014 5132 5086 6 1865 445 308 73 22 chr1 167835528 167835800 -29359632 - L1ME1 LINE L1 -1134 5012 4727 6 1865 236 318 0 57 chr1 167836023 167836093 -29359339 - B4A SINE B4 -2 290 225 6 1865 902 170 8 163 chr1 167837223 167837335 -29358097 - URR1A DNA MER1_type -24 202 103 6 1865 1164 44 0 0 chr1 167837335 167837472 -29357960 + B1_Mm SINE Alu 2 138 -9 6 1865 902 170 8 163 chr1 167837472 167837598 -29357834 - URR1A DNA MER1_type -124 102 1 6 1865 469 269 67 0 chr1 167837771 167837875 -29357557 + PB1 SINE Alu 5 115 -12 6 1865 522 214 16 41 chr1 167838298 167838420 -29357012 - PB1D9 SINE Alu 0 120 2 6 1865 544 221 57 8 chr1 167839322 167839445 -29355987 + RSINE1 SINE B4 4 132 -33 6 1865 1354 220 249 5 chr1 167839736 167840161 -29355271 + MT2A LTR ERVL 1 529 -4 6 1865 1095 44 0 0 chr1 167840255 167840391 -29355041 - B1_Mus1 SINE Alu -1 147 12 6 1865 554 197 40 99 chr1 167840256 167840408 -29355024 - B4 SINE B4 -69 223 81 6 1865 24 53 0 0 chr1 167842517 167842555 -29352877 + AT_rich Low_complexity Low_complexity 1 38 0 6 1865 432 283 152 0 chr1 167842813 167842958 -29352474 - MIR SINE MIR -3 259 93 6 1865 23 0 0 0 chr1 167843555 167843578 -29351854 + AT_rich Low_complexity Low_complexity 1 23 0 6 1865 684 132 47 93 chr1 167843994 167844131 -29351301 + B1_Mur4 SINE Alu 8 141 -9 6 1865 222 37 0 0 chr1 167844131 167844158 -29351274 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1865 684 132 47 93 chr1 167844158 167844170 -29351262 + B1_Mur4 SINE Alu 142 150 0 6 1865 266 281 62 88 chr1 167844671 167844784 -29350648 - B3A SINE B2 -88 110 1 6 1865 21 57 0 0 chr1 167845102 167845137 -29350295 + AT_rich Low_complexity Low_complexity 1 35 0 6 1865 189 107 0 0 chr1 167845938 167845966 -29349466 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 6 1865 332 147 51 51 chr1 167846075 167846154 -29349278 - RMER4A LTR ERVK 0 466 388 6 1865 486 33 0 0 chr1 167846154 167846214 -29349218 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1865 1765 155 21 3 chr1 167846216 167846507 -29348925 - RMER4A LTR ERVK -119 347 52 6 1865 26 0 0 0 chr1 167846582 167846608 -29348824 + AT_rich Low_complexity Low_complexity 1 26 0 6 1865 1115 250 114 10 chr1 167847339 167847638 -29347794 + Lx8 LINE L1 6993 7322 -151 6 1865 513 0 0 0 chr1 167847643 167847700 -29347732 + (CCA)n Simple_repeat Simple_repeat 2 58 0 6 1865 195 42 0 0 chr1 167847703 167847727 -29347705 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1865 1206 207 113 29 chr1 167847866 167848210 -29347222 + ORR1D1 LTR MaLR 2 374 0 6 1865 614 225 62 8 chr1 167848304 167848434 -29346998 + B1_Mur4 SINE Alu 1 137 -13 6 1865 460 265 10 0 chr1 167848828 167848930 -29346502 - PB1D10 SINE Alu -14 103 1 6 1865 798 277 26 35 chr1 167850128 167850476 -29344956 + L1M5 LINE L1 3380 3724 -2422 6 1865 243 88 0 0 chr1 167850960 167850994 -29344438 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1865 975 206 29 5 chr1 167851251 167851461 -29343971 - B3 SINE B2 0 216 2 6 1865 405 136 0 0 chr1 167853579 167853645 -29341787 + (T)n Simple_repeat Simple_repeat 1 66 0 6 1865 804 93 43 0 chr1 167853645 167853784 -29341648 - RMER17B LTR ERVK -499 459 315 6 1865 947 61 53 0 chr1 167854755 167854886 -29340546 + B1_Mus2 SINE Alu 10 147 0 6 1865 30 0 0 0 chr1 167854886 167854916 -29340516 + AT_rich Low_complexity Low_complexity 1 30 0 6 1865 490 318 98 57 chr1 167854936 167855413 -29340019 + L1MDa LINE L1 1592 2088 -4545 6 1865 534 305 144 10 chr1 167855421 167855842 -29339590 + L1M2 LINE L1 2086 2562 -3581 6 1865 299 223 92 24 chr1 167855910 167856017 -29339415 + L1M2 LINE L1 2531 2675 -3465 6 1865 492 280 56 0 chr1 167856165 167856290 -29339142 - ID_B1 SINE B4 -3 221 90 6 1865 443 333 62 6 chr1 167856324 167856484 -29338948 + B4A SINE B4 106 274 -18 6 1865 594 0 0 0 chr1 167856686 167856752 -29338680 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1865 1319 280 86 23 chr1 167857484 167858288 -29337144 + L1MA6 LINE L1 5141 6021 -135 6 1865 258 105 0 0 chr1 167858615 167858653 -29336779 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 6 1865 299 204 94 83 chr1 167859267 167859363 -29336069 - PB1 SINE Alu -1 126 30 6 1865 252 59 0 0 chr1 167859386 167859420 -29336012 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1865 215 286 0 204 chr1 167859878 167859966 -29335466 + B1F2 SINE Alu 43 112 -37 6 1865 272 300 183 8 chr1 167860074 167860205 -29335227 + Tigger12A DNA MER2_type 555 708 -83 6 1865 23 0 0 0 chr1 167862072 167862095 -29333337 + AT_rich Low_complexity Low_complexity 1 23 0 7 1865 21 0 0 0 chr1 167863526 167863547 -29331885 + AT_rich Low_complexity Low_complexity 1 21 0 7 1865 24 100 0 0 chr1 167864487 167864567 -29330865 + AT_rich Low_complexity Low_complexity 1 80 0 7 1865 195 354 60 40 chr1 167866244 167866394 -29329038 - MIRc SINE MIR -106 162 10 7 1865 223 196 35 35 chr1 167866424 167866482 -29328950 + GA-rich Low_complexity Low_complexity 3 60 0 7 1865 757 292 149 3 chr1 167866695 167866977 -29328455 + RCHARR1 DNA MER1_type 129 451 -523 7 1865 775 301 5 11 chr1 167866979 167867164 -29328268 + B3 SINE B2 3 186 -30 7 1865 1863 224 53 20 chr1 167867191 167867702 -29327730 + RCHARR1 DNA MER1_type 443 970 -4 7 1865 366 175 111 12 chr1 167868832 167868913 -29326519 + ORR1E LTR MaLR 1 89 -285 7 1865 531 243 195 22 chr1 167868961 167869146 -29326286 + ORR1E LTR MaLR 56 272 -87 7 1865 1430 81 0 5 chr1 167869735 167869922 -29325510 + B2_Mm2 SINE B2 3 188 -7 7 1865 361 110 504 22 chr1 167869960 167870099 -29325333 + B3 SINE B2 5 210 -6 7 1865 274 154 0 0 chr1 167870301 167870340 -29325092 + ID2 SINE ID 5 43 -40 7 1865 1041 207 35 0 chr1 167870446 167870649 -29324783 + B3 SINE B2 1 210 -6 7 1865 1272 67 18 0 chr1 167871091 167871255 -29324177 - L1_Mm LINE L1 -350 5533 5367 7 1865 2234 52 7 24 chr1 167871255 167871553 -29323879 + L1_Mus1 LINE L1 6275 6567 0 7 1865 207 0 0 0 chr1 167871929 167871952 -29323480 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1865 684 271 66 50 chr1 167874065 167874221 -29321211 + MLT1C LTR MaLR 221 379 -88 7 1865 640 169 168 96 chr1 167874221 167874430 -29321002 + URR1B DNA MER1_type 1 224 -1 7 1865 684 271 66 50 chr1 167874430 167874514 -29320918 + MLT1C LTR MaLR 380 465 -2 7 1865 213 39 0 0 chr1 167875152 167875178 -29320254 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1865 208 342 40 0 chr1 167875412 167875488 -29319944 + MIR SINE MIR 46 124 -84 7 1865 21 24 0 47 chr1 167875531 167875551 -29319881 + AT_rich Low_complexity Low_complexity 1 20 0 7 1865 1102 76 7 0 chr1 167875551 167875696 -29319736 - B1_Mm SINE Alu 0 147 2 7 1865 21 24 0 47 chr1 167875696 167875718 -29319714 + AT_rich Low_complexity Low_complexity 1 21 0 7 1865 435 202 10 82 chr1 167876997 167877094 -29318338 + B4A SINE B4 203 292 0 7 1865 627 272 24 76 chr1 167877250 167877569 -29317863 + MTEb LTR MaLR 3 371 -8 7 1865 297 0 0 0 chr1 167878668 167878701 -29316731 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1865 3071 39 37 0 chr1 167878864 167879247 -29316185 + L1Md_F2 LINE L1 6178 6574 -8 7 1865 497 286 77 13 chr1 167879475 167879631 -29315801 + MER5A DNA MER1_type 24 189 0 7 1865 1578 141 260 3 chr1 167880285 167880620 -29314812 + MTC LTR MaLR 1 421 0 7 1865 325 263 26 13 chr1 167880691 167880768 -29314664 + ID4 SINE ID 1 78 -5 7 1865 220 299 43 43 chr1 167880954 167881024 -29314408 - ID4 SINE ID -13 70 1 7 1865 1010 52 82 0 chr1 167881120 167881255 -29314177 - B1_Mus1 SINE Alu -1 147 2 7 1865 1493 114 274 0 chr1 167881740 167881995 -29313437 + ORR1A3 LTR MaLR 1 325 -1 7 1865 348 270 152 22 chr1 167882051 167882229 -29313203 - Lx9 LINE L1 -1721 5923 5723 7 1865 288 111 0 0 chr1 167882304 167882349 -29313083 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 7 1865 265 298 117 12 chr1 167884808 167884971 -29310461 - L1MEe LINE L1 -4418 436 257 7 1865 1090 62 7 14 chr1 167885358 167885504 -29309928 - B1_Mus2 SINE Alu -1 146 2 7 1865 250 204 0 0 chr1 167886104 167886153 -29309279 + B1_Mur4 SINE Alu 1 49 -101 7 1865 310 317 120 22 chr1 167886178 167886362 -29309070 - MIRb SINE MIR -2 266 65 7 1865 462 281 38 115 chr1 167887452 167887661 -29307771 + B3A SINE B2 2 194 -4 7 1865 839 259 0 39 chr1 167887700 167887905 -29307527 + B3 SINE B2 1 197 -19 7 1865 341 325 77 96 chr1 167887954 167888162 -29307270 + B4A SINE B4 5 208 -84 7 1865 222 280 147 0 chr1 167888141 167888216 -29307216 + RSINE1 SINE B4 78 163 -2 7 1865 342 0 0 0 chr1 167888218 167888256 -29307176 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1865 302 247 48 20 chr1 167888794 167888887 -29306545 + B1_Mur4 SINE Alu 29 150 0 7 1865 185 0 40 0 chr1 167888914 167888939 -29306493 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1865 1758 123 35 14 chr1 167889270 167889559 -29305873 + Lx4B LINE L1 6753 7047 -11 7 1865 3958 122 36 34 chr1 167889610 167890338 -29305094 + RMER17D2 LTR ERVK 81 809 0 7 1865 21 0 0 0 chr1 167890347 167890368 -29305064 + AT_rich Low_complexity Low_complexity 1 21 0 7 1865 336 178 82 82 chr1 167890866 167890964 -29304468 + PB1 SINE Alu 20 117 -10 7 1865 226 280 218 27 chr1 167891509 167891729 -29303703 - L2 LINE L2 -1085 2334 2073 7 1865 508 161 106 9 chr1 167891769 167891882 -29303550 - ORR1D2 LTR MaLR -246 124 1 7 1865 421 250 216 8 chr1 167892243 167892368 -29303064 - B3A SINE B2 -47 151 1 7 1865 430 250 164 0 chr1 167892699 167892827 -29302605 - RSINE1 SINE B4 -12 153 5 7 1865 337 266 20 78 chr1 167893110 167893212 -29302220 + PB1D10 SINE Alu 22 117 0 7 1865 22 0 0 0 chr1 167893280 167893302 -29302130 + AT_rich Low_complexity Low_complexity 1 22 0 7 1865 712 337 26 52 chr1 167893374 167893684 -29301748 - MER58B DNA MER1_type -4 337 36 7 1865 516 32 0 0 chr1 167895145 167895207 -29300225 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1865 243 0 0 0 chr1 167895209 167895236 -29300196 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1865 517 254 45 30 chr1 167895952 167896086 -29299346 + ID_B1 SINE B4 84 219 -5 7 1865 360 219 69 17 chr1 167897560 167897676 -29297756 + B3A SINE B2 76 197 -1 7 1865 228 204 227 0 chr1 167898625 167898713 -29296719 + Lx9 LINE L1 7536 7643 -1 7 1865 483 238 48 0 chr1 167899072 167899177 -29296255 - RSINE1 SINE B4 -50 115 6 7 1865 341 296 73 29 chr1 167899215 167899351 -29296081 + B1F SINE Alu 8 149 0 7 1865 9655 9 0 0 chr1 167899983 167901162 -29294270 + L1Md_T LINE L1 4747 5925 -657 7 1865 569 253 102 75 chr1 167901169 167901464 -29293968 + RLTR12B LTR ERVK 184 486 -42 7 1865 1702 132 46 3 chr1 167902197 167902500 -29292932 - RLTR15 LTR ERVK -5 354 39 7 1865 636 125 31 55 chr1 167902501 167902628 -29292804 + B1_Mur3 SINE Alu 26 149 0 7 233 183 356 14 14 chr1 167903172 167903246 -29292186 + L2c LINE L2 3293 3366 -21 7 1866 1036 120 31 42 chr1 167903302 167903493 -29291939 + B2_Mm2 SINE B2 3 191 -4 7 1866 283 338 0 0 chr1 167903613 167903687 -29291745 + ID4 SINE ID 3 76 -7 7 1866 268 255 0 0 chr1 167904179 167904226 -29291206 + MER58D DNA MER1_type 35 81 -305 7 1866 350 42 21 0 chr1 167904272 167904320 -29291112 + (TATG)n Simple_repeat Simple_repeat 2 50 0 7 1866 468 235 100 8 chr1 167904338 167904458 -29290974 - B3 SINE B2 -82 134 4 7 1866 281 282 79 45 chr1 167904507 167904596 -29290836 - B4 SINE B4 0 292 201 7 1866 393 271 204 5 chr1 167904730 167904981 -29290451 + Cheshire DNA MER1_type 2125 2404 -16 7 1866 814 144 58 0 chr1 167905316 167905455 -29289977 + B1_Mur3 SINE Alu 3 149 0 7 1866 381 117 0 0 chr1 167905906 167905966 -29289466 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1866 561 265 86 114 chr1 167906774 167906791 -29288641 + RMER4A LTR ERVK 17 33 -433 7 1866 189 0 0 0 chr1 167906791 167906812 -29288620 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1866 561 256 67 103 chr1 167906812 167907237 -29288195 + RMER4A LTR ERVK 34 554 -31 7 1866 2129 153 35 25 chr1 167908099 167908502 -29286930 + MTB_Mm LTR MaLR 1 407 0 7 1866 1275 343 98 12 chr1 167908857 167909474 -29285958 - Tigger7 DNA MER2_type -2 703 5 7 1866 233 278 112 10 chr1 167910111 167910209 -29285223 + PB1D10 SINE Alu 10 117 0 7 1866 625 270 75 25 chr1 167910420 167910621 -29284811 - ID_B1 SINE B4 -12 212 2 7 1866 207 0 0 0 chr1 167910874 167910897 -29284535 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1866 183 80 0 0 chr1 167911218 167911243 -29284189 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 7 1866 446 261 45 0 chr1 167911629 167911763 -29283669 + B1F SINE Alu 1 140 -9 7 1866 915 166 217 15 chr1 167912207 167912531 -29282901 + ORR1B1 LTR MaLR 1 389 -5 7 1866 259 326 42 42 chr1 167913892 167913988 -29281444 + MIR SINE MIR 7 102 -160 7 1866 432 225 72 0 chr1 167914187 167914298 -29281134 + PB1D7 SINE Alu 1 119 -1 7 1866 851 225 63 24 chr1 167914767 167914972 -29280460 - B3 SINE B2 0 216 4 7 1866 234 204 0 0 chr1 167914984 167915028 -29280404 - Charlie1b DNA MER1_type -12 511 468 7 1866 383 281 185 0 chr1 167915036 167915171 -29280261 + MLT1F2 LTR MaLR 3 162 -398 7 1866 529 314 76 136 chr1 167915878 167916232 -29279200 + MLT1F2 LTR MaLR 153 485 -75 7 1866 834 169 0 34 chr1 167916696 167916843 -29278589 + B1_Mur2 SINE Alu 1 142 -7 7 1866 297 250 157 86 chr1 167917989 167918129 -29277303 - RSINE1 SINE B4 -13 152 3 7 1866 1403 153 145 10 chr1 167918236 167918533 -29276899 - ORR1B1 LTR MaLR 0 394 58 7 1866 1326 87 22 0 chr1 167919440 167919623 -29275809 - B2_Mm2 SINE B2 -7 188 2 7 1866 730 227 0 0 chr1 167920618 167920759 -29274673 + B1_Mur2 SINE Alu 2 142 -7 7 1866 268 250 152 0 chr1 167920842 167920934 -29274498 + MER57-int LTR ERV1 7156 7261 -276 7 1866 21 71 0 0 chr1 167921648 167921690 -29273742 + AT_rich Low_complexity Low_complexity 1 42 0 7 1866 182 383 75 79 chr1 167922676 167922917 -29272515 + L2b LINE L2 3078 3317 -58 7 1866 289 236 125 0 chr1 167923829 167923901 -29271531 + ID4_ SINE ID 2 82 -1 7 1866 396 0 0 0 chr1 167924648 167924692 -29270740 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1866 711 249 40 45 chr1 167924815 167925017 -29270415 + B3 SINE B2 6 206 -10 8 1866 1646 21 0 20 chr1 167925345 167925541 -29269891 + B2_Mm1a SINE B2 2 193 0 8 1866 300 224 75 26 chr1 167925557 167925681 -29269751 + MIRc SINE MIR 91 222 -46 8 1866 553 236 58 75 chr1 167926355 167926543 -29268889 - B4A SINE B4 0 292 108 8 1866 197 371 35 14 chr1 167926570 167926715 -29268717 + MIR3 SINE MIR 60 207 -1 8 1866 22 35 0 0 chr1 167927367 167927396 -29268036 + AT_rich Low_complexity Low_complexity 1 29 0 8 1866 241 289 26 0 chr1 167928073 167928149 -29267283 + PB1D10 SINE Alu 33 110 -7 8 1866 216 97 0 0 chr1 167928432 167928463 -29266969 + (GAA)n Simple_repeat Simple_repeat 2 32 0 8 1866 23 54 0 0 chr1 167929475 167929512 -29265920 + AT_rich Low_complexity Low_complexity 1 37 0 8 1866 36 77 0 0 chr1 167932370 167932448 -29262984 + GC_rich Low_complexity Low_complexity 1 78 0 8 1866 284 247 0 36 chr1 167932789 167932873 -29262559 + C-rich Low_complexity Low_complexity 2 82 0 8 1866 21 0 0 0 chr1 167933558 167933579 -29261853 + GC_rich Low_complexity Low_complexity 1 21 0 8 1866 189 107 0 0 chr1 167933744 167933772 -29261660 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1866 279 0 0 0 chr1 167933978 167934009 -29261423 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1866 219 36 0 0 chr1 167934182 167934210 -29261222 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1866 228 196 18 73 chr1 167934849 167934904 -29260528 + MIRm SINE MIR 202 253 -23 8 1866 1676 210 48 20 chr1 167934908 167935346 -29260086 - RLTR31B_Mm LTR ERVK 0 584 1 8 1866 259 336 195 8 chr1 167935551 167935674 -29259758 - MIR SINE MIR -111 151 6 8 1866 186 265 20 20 chr1 167936139 167936189 -29259243 + L4 LINE RTE 942 991 -1038 8 1866 474 364 103 39 chr1 167936395 167936804 -29258628 + L4 LINE RTE 1003 1437 -592 8 1866 406 330 48 37 chr1 167936806 167936995 -29258437 - MER117 DNA MER1_type 0 197 7 8 1866 234 350 150 17 chr1 167937000 167937180 -29258252 + L4 LINE RTE 1431 1634 -395 8 1866 573 360 39 3 chr1 167937517 167937826 -29257606 + L2 LINE L2 1920 2239 -1180 8 1866 180 0 0 0 chr1 167938174 167938194 -29257238 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1866 1101 79 0 0 chr1 167938194 167938334 -29257098 - B1_Mus1 SINE Alu -8 140 1 8 1866 673 164 35 0 chr1 167938595 167938711 -29256721 - B1_Mur4 SINE Alu 0 150 31 8 1866 1514 238 72 45 chr1 167939011 167939374 -29256058 - RMER5 LTR ERV1 -29 505 138 8 1866 1173 57 0 0 chr1 167939374 167939515 -29255917 - B1_Mm SINE Alu -6 141 1 8 1866 1514 238 72 45 chr1 167939515 167939640 -29255792 - RMER5 LTR ERV1 -397 137 4 8 1866 483 259 9 0 chr1 167939826 167939934 -29255498 - PB1D9 SINE Alu 0 120 12 8 1866 309 286 76 58 chr1 167939938 167940213 -29255219 - L1MC4a LINE L1 -1852 6030 5751 8 1866 522 297 27 33 chr1 167940696 167940846 -29254586 - RSINE1 SINE B4 -14 151 3 8 1866 783 240 97 0 chr1 167940960 167941156 -29254276 + B3 SINE B2 1 215 -1 8 1866 1191 233 42 141 chr1 167941236 167941620 -29253812 - MTE2b LTR MaLR -32 347 2 8 1866 597 271 0 15 chr1 167942385 167942520 -29252912 + ID_B1 SINE B4 88 220 -4 8 1866 325 240 28 46 chr1 167942555 167942664 -29252768 + PB1D10 SINE Alu 10 116 -1 8 1866 266 231 110 90 chr1 167942690 167942790 -29252642 + B3A SINE B2 19 120 -78 8 1866 378 309 54 24 chr1 167942720 167942886 -29252546 + B4A SINE B4 48 218 -74 8 1866 270 318 55 18 chr1 167943020 167943129 -29252303 - MIRb SINE MIR -68 200 88 8 1866 229 336 86 53 chr1 167944071 167944316 -29251116 + Tigger15a DNA TcMar 176 428 -287 8 1866 21 71 0 0 chr1 167944430 167944472 -29250960 + AT_rich Low_complexity Low_complexity 1 42 0 8 1866 405 0 0 0 chr1 167945150 167945195 -29250237 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1866 656 241 29 0 chr1 167945209 167945346 -29250086 - RSINE1 SINE B4 -21 144 4 8 1866 775 233 14 33 chr1 167945475 167945688 -29249744 - L1M4c LINE L1 -2061 4318 4110 8 1866 424 222 89 3 chr1 167945675 167945742 -29249690 - L1M4c LINE L1 -2692 3684 3615 8 1866 216 0 0 0 chr1 167945742 167945766 -29249666 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1866 424 222 90 5 chr1 167945766 167945859 -29249573 - L1M4c LINE L1 -2762 3617 3514 8 1866 642 246 56 9 chr1 167946028 167946241 -29249191 - L1M4c LINE L1 -2892 3487 3265 8 1866 203 93 0 104 chr1 167946770 167946789 -29248643 + A-rich Low_complexity Low_complexity 1 15 0 8 1866 827 146 26 46 chr1 167946789 167946940 -29248492 + B1_Mur2 SINE Alu 2 149 0 8 1866 203 93 0 104 chr1 167946940 167946968 -29248464 + A-rich Low_complexity Low_complexity 16 43 0 8 1866 213 121 0 0 chr1 167946976 167947009 -29248423 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 8 1866 281 310 80 39 chr1 167947341 167947496 -29247936 - B4 SINE B4 0 165 2 8 1866 683 177 24 0 chr1 167947697 167947821 -29247611 - B3A SINE B2 -70 128 2 8 1866 405 0 0 0 chr1 167947845 167947890 -29247542 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1866 392 247 12 0 chr1 167947895 167947976 -29247456 + B1_Mur3 SINE Alu 62 143 -6 8 1866 336 143 0 0 chr1 167947989 167948045 -29247387 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 8 1866 586 279 83 83 chr1 167948350 167948463 -29246969 - L1M4c LINE L1 -4620 1764 1653 8 1866 5434 56 34 7 chr1 167948463 167949164 -29246268 - L1_Mus3 LINE L1 0 6638 5919 8 1866 586 279 83 83 chr1 167949164 167949398 -29246034 - L1M4c LINE L1 -4732 1652 1418 8 1866 866 298 94 26 chr1 167949395 167950015 -29245417 - L1M3a LINE L1 -4589 1552 888 8 1866 2486 80 12 0 chr1 167950176 167950501 -29244931 + ORR1A4 LTR MaLR 1 329 0 8 1866 453 309 128 22 chr1 167950672 167950851 -29244581 - Tigger5 DNA MER2_type -2207 199 2 8 1866 1648 42 0 0 chr1 167951011 167951204 -29244228 + B2_Mm1a SINE B2 1 193 0 8 1866 226 139 0 0 chr1 167951785 167951831 -29243601 - MIRc SINE MIR -63 145 100 8 1866 3817 25 27 0 chr1 167951980 167952425 -29243007 + L1Md_F2 LINE L1 6125 6581 -1 8 1866 638 242 72 57 chr1 167953153 167953346 -29242086 + B3A SINE B2 3 198 0 8 1866 769 212 7 0 chr1 167953423 167953569 -29241863 + B1_Mur1 SINE Alu 1 147 -2 8 1866 405 0 0 0 chr1 167953780 167953825 -29241607 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1866 1028 58 0 0 chr1 167953826 167953964 -29241468 + B1_Mus1 SINE Alu 11 148 0 8 1866 444 302 68 46 chr1 167954707 167954988 -29240444 + MLT1I LTR MaLR 57 343 -68 8 1866 1135 153 63 0 chr1 167955772 167955961 -29239471 - B3 SINE B2 -14 202 2 8 1866 871 235 23 18 chr1 167956182 167956403 -29239029 - ID_B1 SINE B4 0 224 3 8 1866 197 262 16 32 chr1 167957139 167957202 -29238230 - L2c LINE L2 -236 3151 3090 8 1866 263 305 0 40 chr1 167957555 167957654 -29237778 - MLT1A1 LTR MaLR 0 408 314 8 1866 3482 82 24 2 chr1 167957738 167958203 -29237229 + MT2C_Mm LTR ERVL 1 475 0 8 1866 862 184 0 0 chr1 167958262 167958403 -29237029 - B1_Mur4 SINE Alu -8 142 2 8 1866 290 279 25 0 chr1 167960107 167960186 -29235246 + B4A SINE B4 2 82 -210 8 1866 643 218 13 39 chr1 167960207 167960360 -29235072 + B3 SINE B2 66 214 -2 8 1866 306 73 0 0 chr1 167960363 167960404 -29235028 + (GGA)n Simple_repeat Simple_repeat 3 43 0 8 1866 1056 146 0 0 chr1 167960404 167960582 -29234850 + (GAA)n Simple_repeat Simple_repeat 1 178 0 8 1866 253 236 131 85 chr1 167961255 167961345 -29234087 - L1MEc LINE L1 -5470 930 837 8 1866 240 313 81 0 chr1 167961345 167961444 -29233988 - PB1D10 SINE Alu -6 111 5 8 1866 272 252 206 64 chr1 167961444 167961668 -29233764 - L1MEc LINE L1 -5564 836 580 8 1866 1052 204 96 16 chr1 167961920 167962169 -29233263 - MTEb LTR MaLR -108 271 3 8 1866 419 132 48 0 chr1 167963241 167963324 -29232108 + Lx2B LINE L1 6909 6995 -5 8 1866 4454 62 2 16 chr1 167963715 167964287 -29231145 + LTRIS2 LTR ERV1 1 564 0 8 1866 219 333 14 27 chr1 167964348 167964422 -29231010 + ID4 SINE ID 11 83 0 8 1866 840 273 75 20 chr1 167965905 167966197 -29229235 + L1MB5 LINE L1 5823 6130 -44 8 1866 265 321 113 44 chr1 167966282 167966671 -29228761 - MLT1G LTR MaLR -102 453 33 8 1866 608 337 129 12 chr1 167967646 167968058 -29227374 + MLT1F LTR MaLR 19 478 -70 8 1866 660 26 0 0 chr1 167968453 167968531 -29226901 + (TC)n Simple_repeat Simple_repeat 2 79 0 8 1866 369 0 0 0 chr1 167968531 167968571 -29226861 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1866 2298 143 52 0 chr1 167968837 167969221 -29226211 - MTC LTR MaLR -17 404 1 8 1866 2840 136 33 10 chr1 167970143 167970655 -29224777 + RLTR28 LTR ERVL 1 524 0 8 1866 804 314 37 32 chr1 167971391 167971822 -29223610 + MLT1F-int LTR MaLR 320 752 -619 8 1866 786 148 0 66 chr1 167972068 167972220 -29223212 + B1_Mur4 SINE Alu 2 143 -7 8 1866 680 285 93 81 chr1 167972233 167972577 -29222855 + MLT1A0-int LTR MaLR 1373 1720 -15 8 1866 837 247 161 34 chr1 167972596 167972919 -29222513 + MLT1A0 LTR MaLR 1 364 -1 8 1866 380 241 0 0 chr1 167974463 167974542 -29220890 - RSINE1 SINE B4 -85 80 2 8 1866 549 250 102 48 chr1 167974631 167974925 -29220507 - L1MC3 LINE L1 0 7785 7476 8 1866 220 274 0 0 chr1 167975458 167975509 -29219923 + CT-rich Low_complexity Low_complexity 1 51 0 8 1866 183 80 0 0 chr1 167977086 167977111 -29218321 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 1866 654 200 0 8 chr1 167977404 167977530 -29217902 - RSINE1 SINE B4 -38 127 3 8 1866 211 324 15 0 chr1 167978203 167978271 -29217161 + ID4_ SINE ID 1 69 -14 8 1866 1162 249 91 15 chr1 167980308 167980639 -29214793 + L1MB7 LINE L1 5773 6128 -56 8 1866 432 241 96 70 chr1 167980651 167980807 -29214625 - B3A SINE B2 0 198 39 8 1866 704 168 28 35 chr1 167980842 167980984 -29214448 - B1_Mur4 SINE Alu 0 150 10 8 1866 490 280 16 0 chr1 167981261 167981386 -29214046 + RSINE1 SINE B4 4 130 -35 8 1866 417 20 0 0 chr1 167981390 167981440 -29213992 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1866 361 276 0 0 chr1 167981741 167981817 -29213615 + ID4_ SINE ID 2 77 -6 8 1866 690 288 60 42 chr1 167982021 167982304 -29213128 + B4 SINE B4 3 290 -2 9 1866 383 233 8 0 chr1 167982312 167982441 -29212991 + (CA)n Simple_repeat Simple_repeat 1 130 0 9 1866 315 287 0 31 chr1 167982456 167982553 -29212879 - Charlie10b DNA MER1_type -138 104 11 9 1866 420 191 0 0 chr1 167982601 167982690 -29212742 + (CATA)n Simple_repeat Simple_repeat 2 90 0 9 1866 222 216 0 0 chr1 167982799 167982873 -29212559 + GA-rich Low_complexity Low_complexity 1 74 0 9 1866 840 200 0 26 chr1 167982895 167983049 -29212383 - B3A SINE B2 -46 152 3 9 1866 306 231 31 163 chr1 167983432 167983561 -29211871 + MamGypLTR2c LTR Gypsy 6 117 -951 9 1866 265 149 0 21 chr1 167983590 167983638 -29211794 + Charlie10b DNA MER1_type 17 63 -179 9 1866 649 222 11 50 chr1 167983604 167983784 -29211648 - Charlie10b DNA MER1_type -69 173 1 9 1866 259 224 326 0 chr1 167984272 167984290 -29211142 - B4 SINE B4 -78 214 87 9 1866 353 141 295 0 chr1 167984290 167984368 -29211064 - B1_Mm SINE Alu -45 102 2 9 1866 654 289 136 9 chr1 167984392 167984612 -29210820 - RCHARR1 DNA MER1_type -694 280 33 9 1866 342 0 0 0 chr1 167984966 167985004 -29210428 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1866 205 98 0 47 chr1 167986467 167986510 -29208922 + (GGGAGA)n Simple_repeat Simple_repeat 2 42 0 9 1866 398 272 226 57 chr1 167986837 167987067 -29208365 - MTEb LTR MaLR -26 353 85 9 1866 356 300 99 33 chr1 167987375 167987647 -29207785 - MamRep605 Unknown Unknown -204 672 383 9 1866 2989 156 129 153 chr1 167988479 167989391 -29206041 + RMER19B LTR ERVK 1 890 -12 9 1866 261 0 0 0 chr1 167990140 167990169 -29205263 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1866 225 0 0 0 chr1 167991323 167991348 -29204084 + (CAGGA)n Simple_repeat Simple_repeat 1 25 0 9 1866 216 0 0 0 chr1 167992316 167992340 -29203092 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1866 2770 48 33 0 chr1 167992502 167992837 -29202595 - ORR1A1 LTR MaLR 0 346 1 9 1866 326 209 0 43 chr1 167993723 167993793 -29201639 - HAL1-3A_ME LINE L1 -820 2038 1972 9 1866 297 167 0 0 chr1 167993803 167993857 -29201575 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1866 351 271 0 0 chr1 167993915 167993985 -29201447 - RSINE1 SINE B4 -92 73 4 9 1866 180 0 0 0 chr1 167994016 167994036 -29201396 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 9 1866 571 284 73 24 chr1 167994758 167994964 -29200468 + B3 SINE B2 1 216 0 9 1866 298 341 7 7 chr1 167994983 167995122 -29200310 - MER58B DNA MER1_type -22 319 181 9 1866 1702 268 88 21 chr1 167995142 167995770 -29199662 + L1M4c LINE L1 18 687 -5697 9 1866 663 296 39 10 chr1 167995780 167995988 -29199444 - ID_B1 SINE B4 0 224 11 9 1866 1682 63 304 0 chr1 167996048 167996298 -29199134 + ORR1A2 LTR MaLR 2 327 0 9 1866 10682 130 61 43 chr1 167996298 167997262 -29198170 + ORR1A2-int LTR MaLR 1 1032 -931 9 1866 1251 41 0 0 chr1 167997262 167997409 -29198023 + B1_Mus2 SINE Alu 1 147 0 9 1866 10682 130 61 43 chr1 167997409 167998374 -29197058 + ORR1A2-int LTR MaLR 1033 1963 0 9 1866 2059 94 21 27 chr1 167998374 167998502 -29196930 + ORR1A2 LTR MaLR 1 128 -199 9 1866 3985 114 93 20 chr1 167998502 167999202 -29196230 + RMER17A LTR ERVK 1 751 0 9 1866 2059 94 21 27 chr1 167999202 167999402 -29196030 + ORR1A2 LTR MaLR 129 327 0 9 1866 619 146 29 115 chr1 167999435 167999574 -29195858 - RLTR18B LTR ERVK -385 127 1 9 1866 192 40 0 0 chr1 167999624 167999649 -29195783 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1866 222 231 107 107 chr1 167999674 167999795 -29195637 + RSINE1 SINE B4 45 165 0 9 1866 396 236 264 0 chr1 167999813 167999923 -29195509 + RSINE1 SINE B4 11 149 -16 9 1866 295 247 122 10 chr1 168000001 168000099 -29195333 + L1M4c LINE L1 1094 1202 -5182 1 1866 4002 61 9 60 chr1 168000099 168000372 -29195060 - LTRIS2 LTR ERV1 -1 563 302 2 1866 1239 48 0 0 chr1 168000372 168000519 -29194913 + B1_Mm SINE Alu 1 147 0 3 1866 4002 61 9 60 chr1 168000519 168000824 -29194608 - LTRIS2 LTR ERV1 -263 301 15 2 1866 976 261 154 28 chr1 168000843 168001316 -29194116 + L1M4c LINE L1 1243 1775 -4609 1 1866 318 169 42 0 chr1 168001438 168001509 -29193923 + L1M4c LINE L1 2163 2236 -4148 1 1866 416 278 71 167 chr1 168001524 168001628 -29193804 + B4 SINE B4 1 80 -212 4 1866 1154 107 6 0 chr1 168001628 168001805 -29193627 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1866 416 278 71 167 chr1 168001805 168002011 -29193421 + B4 SINE B4 81 281 -11 4 1866 438 20 0 0 chr1 168002029 168002080 -29193352 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1866 248 196 27 27 chr1 168002084 168002106 -29193326 + polypyrimidine Low_complexity Low_complexity 90 111 0 7 1866 183 80 0 0 chr1 168002106 168002131 -29193301 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1866 248 196 27 27 chr1 168002131 168002218 -29193214 + CT-rich Low_complexity Low_complexity 2 89 0 9 1866 238 195 11 11 chr1 168002272 168002360 -29193072 + CT-rich Low_complexity Low_complexity 2 89 0 9 1866 426 39 0 0 chr1 168002361 168002413 -29193019 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1866 305 204 204 0 chr1 168002417 168002505 -29192927 + L1M4c LINE L1 2285 2390 -3994 1 1866 229 284 24 121 chr1 168002555 168002679 -29192753 + L1M4c LINE L1 2462 2573 -3809 1 1866 435 182 39 48 chr1 168002814 168002911 -29192521 + B1F2 SINE Alu 47 142 -7 1 1866 206 62 31 0 chr1 168002911 168002943 -29192489 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1866 450 297 320 3 chr1 168002962 168003268 -29192164 + L1M4c LINE L1 2576 2978 -3404 1 1866 640 294 32 90 chr1 168003275 168003709 -29191723 + L1MB3 LINE L1 5773 6181 -2 1 1866 259 318 31 124 chr1 168003719 168003816 -29191616 + B1F2 SINE Alu 5 92 -57 1 1866 286 247 140 0 chr1 168003949 168004042 -29191390 + B3 SINE B2 110 215 -1 1 1866 806 130 137 0 chr1 168004072 168004203 -29191229 - B1_Mur2 SINE Alu 0 149 1 1 1866 841 306 92 17 chr1 168004217 168004752 -29190680 + L1M4 LINE L1 2513 3087 -3059 1 1866 217 318 126 8 chr1 168004752 168004879 -29190553 + RSINE1 SINE B4 3 144 -21 1 1866 3697 66 14 4 chr1 168004944 168005428 -29190004 + L1_Mus3 LINE L1 6147 6635 -3 1 1866 312 282 88 92 chr1 168005434 168005480 -29189952 + L1M4 LINE L1 3115 3158 -2988 1 1866 285 29 0 0 chr1 168005480 168005514 -29189918 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2 1866 312 282 88 92 chr1 168005514 168005932 -29189500 + L1M4 LINE L1 3159 3577 -2569 1 1866 897 160 21 0 chr1 168005941 168006085 -29189347 + B1_Mus2 SINE Alu 1 147 0 2 1866 186 109 17 52 chr1 168006104 168006162 -29189270 + A-rich Low_complexity Low_complexity 3 58 0 2 1866 364 228 86 17 chr1 168006171 168006287 -29189145 + L1M4 LINE L1 3579 3702 -2444 1 1866 1684 233 281 14 chr1 168006514 168007096 -29188336 + RMER1A Other Other 30 712 -318 2 1866 412 135 9 111 chr1 168007096 168007204 -29188228 + RMER1B Other Other 961 1057 -9 2 1866 417 299 87 20 chr1 168007221 168007371 -29188061 - RMER15 LTR ERVL -11 564 405 2 1866 396 0 0 0 chr1 168007470 168007514 -29187918 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1866 308 295 48 108 chr1 168007958 168008125 -29187307 + L1M5 LINE L1 5665 5821 -303 2 1866 837 44 80 16 chr1 168008215 168008466 -29186966 + (CAGAGA)n Simple_repeat Simple_repeat 1 266 0 2 1866 221 250 58 0 chr1 168008470 168008522 -29186910 - RSINE1 SINE B4 -11 154 100 2 1866 270 331 75 98 chr1 168008570 168008744 -29186688 - B4A SINE B4 -118 174 5 3 1866 527 238 74 40 chr1 168009437 168009612 -29185820 + RLTR42-int LTR ERVK 1220 1400 -4122 3 1866 3675 44 5 2 chr1 168009677 168010112 -29185320 + RLTR10C LTR ERVK 1 436 0 3 1866 1648 6 0 0 chr1 168010112 168010292 -29185140 + MMERVK10C-int LTR ERVK 1 180 -7401 3 1866 225 273 0 0 chr1 168010292 168010336 -29185096 + RLTR27 LTR ERVK 232 275 -34 3 1866 827 126 0 0 chr1 168010336 168010455 -29184977 + MMERVK10C-int LTR ERVK 225 343 -7238 3 1866 905 152 4 177 chr1 168010453 168010724 -29184708 + MMERVK10C-int LTR ERVK 729 952 -6629 3 1866 659 235 134 49 chr1 168010812 168011198 -29184234 + MMERVK10C-int LTR ERVK 314 688 -5449 3 1866 309 175 0 0 chr1 168011185 168011242 -29184190 + MMERVK10C-int LTR ERVK 1089 1145 -4261 3 1866 45800 13 1 10 chr1 168011247 168016396 -29179036 + MMERVK10C-int LTR ERVK 1885 7581 0 3 1866 3661 46 5 2 chr1 168016396 168016831 -29178601 + RLTR10C LTR ERVK 1 436 0 3 1866 289 316 112 31 chr1 168017439 168017599 -29177833 + MIRc SINE MIR 20 192 -76 3 1866 977 244 0 22 chr1 168017806 168018028 -29177404 + ID_B1 SINE B4 5 221 -3 3 1866 989 144 6 0 chr1 168018031 168018205 -29177227 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 3 1866 369 109 0 0 chr1 168018206 168018261 -29177171 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 3 1866 1057 111 12 0 chr1 168018269 168018441 -29176991 + (TCTA)n Simple_repeat Simple_repeat 1 174 0 3 1866 892 295 84 52 chr1 168019285 168019628 -29175804 - MLT1A0 LTR MaLR 0 365 12 3 1866 405 0 0 0 chr1 168019761 168019806 -29175626 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1866 264 320 54 29 chr1 168020788 168020950 -29174482 + L2b LINE L2 3083 3251 -175 4 1866 283 248 106 75 chr1 168020949 168021110 -29174322 - L2a LINE L2 -1 3425 3260 4 1866 218 286 28 28 chr1 168021306 168021378 -29174054 + MIRb SINE MIR 179 250 -18 4 1866 206 282 34 34 chr1 168021500 168021588 -29173844 - MIRb SINE MIR -14 254 167 4 1866 296 0 51 0 chr1 168021910 168021949 -29173483 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1866 719 82 246 0 chr1 168021949 168022059 -29173373 - B1_Mm SINE Alu -9 138 2 4 1866 1502 33 33 6 chr1 168022350 168022533 -29172899 + B2_Mm1t SINE B2 2 189 -4 4 1866 1672 256 21 29 chr1 168022959 168023378 -29172054 - MTD LTR MaLR -2 417 2 4 1866 297 0 0 0 chr1 168023412 168023445 -29171987 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1866 748 294 100 4 chr1 168023491 168023551 -29171881 - B4A SINE B4 -8 284 225 5 1866 315 0 0 0 chr1 168023551 168023586 -29171846 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 5 1866 748 294 100 4 chr1 168023586 168023784 -29171648 - B4A SINE B4 -68 224 3 5 1866 262 338 50 68 chr1 168024177 168024399 -29171033 + Helitron3Na_Mam RC Helitron 265 482 -4 5 1866 399 205 50 59 chr1 168024773 168024892 -29170540 + LTR33 LTR ERVL 397 514 -1 5 1866 2348 98 3 58 chr1 168025335 168025681 -29169751 + ORR1A2 LTR MaLR 1 327 0 5 1866 1897 139 181 0 chr1 168025780 168026112 -29169320 - ORR1B1 LTR MaLR -2 392 1 5 1866 276 223 9 11 chr1 168032308 168032385 -29163047 - MLT1A1 LTR MaLR 0 408 304 5 1866 248 111 22 0 chr1 168032527 168032572 -29162860 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1866 1117 70 0 7 chr1 168032610 168032754 -29162678 + B1_Mus2 SINE Alu 5 147 0 5 1866 323 342 158 60 chr1 168032997 168033364 -29162068 - L3 LINE CR1 -652 3837 3435 5 1866 22 0 0 0 chr1 168033394 168033416 -29162016 + AT_rich Low_complexity Low_complexity 1 22 0 6 1867 457 331 0 14 chr1 168035469 168035616 -29159816 - B1F1 SINE Alu -2 147 3 6 1867 191 341 6 0 chr1 168035661 168035728 -29159704 + MIRc SINE MIR 114 185 -83 6 1867 213 353 29 0 chr1 168035740 168035808 -29159624 + MIRb SINE MIR 117 186 -82 6 1867 1059 160 124 10 chr1 168035984 168036186 -29159246 + URR1A DNA MER1_type 2 226 0 6 1867 673 245 7 0 chr1 168036526 168036673 -29158759 + B1F SINE Alu 1 148 -1 6 1867 252 186 0 0 chr1 168036731 168036790 -29158642 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1867 327 130 19 0 chr1 168036791 168036845 -29158587 - HAL1-3A_ME LINE L1 -831 2027 1973 6 1867 213 276 206 30 chr1 168037433 168037499 -29157933 + L2b LINE L2 2998 3074 -301 6 1867 216 0 0 0 chr1 168037499 168037523 -29157909 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1867 213 276 206 30 chr1 168037523 168037587 -29157845 + L2b LINE L2 3075 3150 -225 6 1867 190 206 0 31 chr1 168037638 168037703 -29157729 + CT-rich Low_complexity Low_complexity 3 65 0 7 1867 1099 70 35 0 chr1 168037704 168037846 -29157586 - B1_Mus1 SINE Alu 0 148 2 7 1867 1129 175 74 15 chr1 168038581 168038784 -29156648 + B3 SINE B2 1 215 -1 7 1867 500 0 17 0 chr1 168038787 168038847 -29156585 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1867 378 193 105 74 chr1 168038857 168038952 -29156480 + B3 SINE B2 119 216 0 7 1867 183 129 0 0 chr1 168038955 168038986 -29156446 + (CATA)n Simple_repeat Simple_repeat 2 32 0 7 1867 341 277 97 9 chr1 168039029 168039142 -29156290 - MIRc SINE MIR -53 215 93 7 1867 514 253 90 39 chr1 168041354 168041510 -29153922 - RSINE1 SINE B4 0 165 2 7 1867 1423 70 5 11 chr1 168041521 168041709 -29153723 - B2_Mm2 SINE B2 -7 188 2 7 1867 383 334 155 32 chr1 168043823 168044132 -29151300 + ORR1D1 LTR MaLR 19 365 -9 7 1867 926 176 15 50 chr1 168044154 168044352 -29151080 + B2_Mm2 SINE B2 1 191 -4 8 1867 872 273 122 11 chr1 168044355 168044618 -29150814 + ORR1D1-int LTR MaLR 4 295 -1285 7 1867 1099 98 80 17 chr1 168044618 168044794 -29150638 + B2_Mm2 SINE B2 1 187 -8 8 1867 219 36 0 0 chr1 168044817 168044845 -29150587 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1867 1623 32 0 11 chr1 168044845 168045025 -29150407 - B2_Mm1a SINE B2 -13 180 1 8 1867 691 280 36 36 chr1 168045025 168045221 -29150211 + ORR1D1-int LTR MaLR 1351 1546 -34 7 1867 730 308 80 60 chr1 168045209 168045561 -29149871 + ORR1D2 LTR MaLR 8 366 -4 8 1867 225 381 50 93 chr1 168046019 168046297 -29149135 + L2b LINE L2 3100 3365 -10 8 1867 408 250 45 103 chr1 168046843 168046999 -29148433 + RMER15 LTR ERVL 3 149 -426 8 1867 238 203 17 0 chr1 168047320 168047379 -29148053 - B1F SINE Alu -1 148 89 8 1867 586 216 57 7 chr1 168047398 168047538 -29147894 - B1F SINE Alu -2 147 1 8 1867 342 182 0 0 chr1 168048030 168048096 -29147336 + GA-rich Low_complexity Low_complexity 1 66 0 8 1867 360 229 16 13 chr1 168048437 168048537 -29146895 + Charlie9 DNA MER1_type 2 106 -2651 9 1867 210 154 26 0 chr1 168048537 168048576 -29146856 + GA-rich Low_complexity Low_complexity 1 40 0 9 1867 534 316 80 25 chr1 168049449 168049754 -29145678 + MLT1C LTR MaLR 95 467 0 9 1867 402 273 44 26 chr1 168049772 168049885 -29145547 + PB1D10 SINE Alu 1 115 -2 9 1867 764 311 54 114 chr1 168050460 168051488 -29143944 - L1ME1 LINE L1 -6 6173 5212 9 1867 1113 279 11 14 chr1 168051489 168051773 -29143659 + B4 SINE B4 8 290 -2 9 1867 225 0 0 0 chr1 168051792 168051817 -29143615 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1867 402 233 102 58 chr1 168052674 168052811 -29142621 - L1MEg LINE L1 -597 5565 5423 9 1867 1173 55 7 0 chr1 168052938 168053084 -29142348 + B1_Mus2 SINE Alu 1 147 0 9 1867 222 37 0 0 chr1 168053084 168053111 -29142321 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1867 382 287 53 99 chr1 168053143 168053301 -29142131 - L1MEg LINE L1 -3488 2658 2501 9 1867 793 226 89 5 chr1 168053301 168053492 -29141940 - B3 SINE B2 -7 209 3 1 1867 382 287 53 99 chr1 168053492 168053708 -29141724 - L1MEg LINE L1 -3646 2500 2301 9 1867 655 340 96 80 chr1 168053710 168054260 -29141172 + MLT1G3 LTR MaLR 1 559 -36 1 1867 301 329 43 47 chr1 168054332 168054632 -29140800 - L1MEg LINE L1 -4034 2208 1910 9 1867 2179 137 40 43 chr1 168055527 168055850 -29139582 + ORR1C1 LTR MaLR 5 338 -40 1 1867 2668 55 12 6 chr1 168055850 168056194 -29139238 + L1Md_F2 LINE L1 6235 6580 -2 1 1867 2179 137 40 43 chr1 168056194 168056245 -29139187 + ORR1C1 LTR MaLR 339 378 0 1 1867 243 324 85 52 chr1 168058892 168059162 -29136270 - L2c LINE L2 -89 3298 3020 1 1867 27 0 0 0 chr1 168059758 168059785 -29135647 + AT_rich Low_complexity Low_complexity 1 27 0 1 1867 716 164 0 0 chr1 168059866 168059976 -29135456 - B1_Mur4 SINE Alu -21 129 20 1 1867 1238 145 22 52 chr1 168061061 168061293 -29134139 - URR1B DNA MER1_type 0 225 1 1 1867 230 304 0 42 chr1 168062204 168062276 -29133156 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1867 822 223 143 5 chr1 168063024 168063213 -29132219 - B3 SINE B2 0 216 2 1 1867 660 328 64 52 chr1 168063236 168063503 -29131929 + B4A SINE B4 1 270 -22 1 1867 360 0 0 0 chr1 168063515 168063555 -29131877 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1867 203 167 19 0 chr1 168064273 168064301 -29131131 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1 1867 1198 49 7 0 chr1 168064301 168064445 -29130987 + B1_Mus2 SINE Alu 2 146 -1 1 1867 203 167 19 0 chr1 168064445 168064470 -29130962 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1867 397 189 24 6 chr1 168064488 168064658 -29130774 + (CA)n Simple_repeat Simple_repeat 1 173 0 1 1867 354 271 53 40 chr1 168065660 168065810 -29129622 - MER5A1 DNA MER1_type -6 160 9 1 1867 252 368 88 32 chr1 168066369 168066585 -29128847 - MLT1G1 LTR MaLR 0 579 352 1 1867 262 291 65 75 chr1 168066787 168066880 -29128552 - PB1D10 SINE Alu -23 94 3 1 1867 219 113 57 0 chr1 168066927 168066980 -29128452 + CT-rich Low_complexity Low_complexity 4 59 0 1 1867 246 231 19 19 chr1 168067004 168067057 -29128375 - ID4 SINE ID -28 55 3 1 1867 796 174 7 34 chr1 168067082 168067231 -29128201 - B1_Mur4 SINE Alu 0 150 6 1 1867 365 218 9 106 chr1 168067132 168067245 -29128187 - MT2B LTR ERVL -344 257 156 1 1867 222 24 22 67 chr1 168069592 168069637 -29125795 + (GGGTG)n Simple_repeat Simple_repeat 4 46 0 1 1867 294 29 0 0 chr1 168069802 168069837 -29125595 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1 1867 311 212 84 46 chr1 168071025 168071175 -29124257 - MTEa LTR MaLR 0 379 224 1 1867 212 231 0 0 chr1 168071200 168071239 -29124193 + polypurine Low_complexity Low_complexity 2 40 0 1 1867 327 345 51 8 chr1 168071375 168071492 -29123940 - MLT1A1 LTR MaLR -280 128 7 1 1867 252 0 0 0 chr1 168072011 168072039 -29123393 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1867 1118 36 66 0 chr1 168072039 168072176 -29123256 - B1_Mus2 SINE Alu 0 147 2 1 1867 548 294 76 38 chr1 168073083 168073267 -29122165 + B3A SINE B2 1 191 -7 1 1867 184 256 0 0 chr1 168073578 168073617 -29121815 + MIRc SINE MIR 117 155 -113 1 1867 1016 223 71 144 chr1 168074546 168074955 -29120477 - MTE2a LTR MaLR 0 379 1 1 1867 199 393 120 0 chr1 168075079 168075196 -29120236 + L2 LINE L2 1525 1655 -1764 1 1867 420 272 140 43 chr1 168075346 168075542 -29119890 + L2 LINE L2 1881 2090 -1329 1 1867 2120 135 53 37 chr1 168075542 168075920 -29119512 - ORR1C2 LTR MaLR 0 384 1 1 1867 420 272 140 43 chr1 168075920 168075980 -29119452 + L2 LINE L2 2091 2161 -1258 1 1867 456 100 0 0 chr1 168075982 168076062 -29119370 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1867 225 345 78 26 chr1 168076066 168076182 -29119250 - MLT1G3 LTR MaLR -313 282 161 1 1867 23 0 0 0 chr1 168077103 168077126 -29118306 + AT_rich Low_complexity Low_complexity 1 23 0 1 1867 392 235 0 16 chr1 168077133 168077254 -29118178 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 1 1867 2091 190 36 15 chr1 168077875 168078287 -29117145 - MTC LTR MaLR 0 421 1 1 1867 395 38 19 0 chr1 168078296 168078349 -29117083 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1867 210 349 30 0 chr1 168079010 168079076 -29116356 + MER91A DNA Tip100 2 69 -127 1 1867 2002 152 48 92 chr1 168079154 168079612 -29115820 - BGLII_B LTR ERVK 0 441 4 1 1867 243 0 0 0 chr1 168079776 168079803 -29115629 + (TCTTG)n Simple_repeat Simple_repeat 3 29 0 1 1867 489 164 0 0 chr1 168080881 168080954 -29114478 - RSINE1 SINE B4 -91 74 2 1 1867 494 335 34 47 chr1 168081211 168081446 -29113986 + MIR SINE MIR 27 258 -4 1 1867 469 279 133 26 chr1 168081803 168081998 -29113434 - MIR SINE MIR -35 227 12 1 1867 905 250 42 0 chr1 168082311 168082523 -29112909 - ID_B1 SINE B4 -3 221 1 1 1867 411 21 0 0 chr1 168085029 168085077 -29110355 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 1 1867 278 218 46 73 chr1 168085805 168085914 -29109518 + L2c LINE L2 3025 3130 -257 1 1867 300 269 6 146 chr1 168086291 168086456 -29108976 + L1MC4a LINE L1 6972 7113 -769 1 1867 274 122 0 0 chr1 168086621 168086670 -29108762 + Lx8 LINE L1 7425 7473 0 1 1867 273 274 111 34 chr1 168086829 168086946 -29108486 + MIR SINE MIR 16 141 -67 1 1867 192 77 0 0 chr1 168087536 168087562 -29107870 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1867 1247 106 16 26 chr1 168088860 168089053 -29106379 - B2_Mm2 SINE B2 -3 192 2 1 1867 593 220 93 7 chr1 168089097 168089248 -29106184 - RSINE1 SINE B4 0 165 2 1 1867 509 326 65 4 chr1 168089508 168089724 -29105708 + MIR SINE MIR 2 231 -37 1 1867 237 310 0 27 chr1 168089901 168089974 -29105458 - MTE2b LTR MaLR -77 302 232 1 1867 451 196 14 0 chr1 168089991 168090134 -29105298 + GA-rich Low_complexity Low_complexity 2 146 0 1 1867 210 37 0 0 chr1 168090160 168090187 -29105245 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1867 206 81 27 0 chr1 168090194 168090231 -29105201 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1867 572 260 0 154 chr1 168090236 168090418 -29105014 - MTE2b LTR MaLR -166 213 60 1 1867 226 222 92 31 chr1 168090432 168090497 -29104935 - MTE2b LTR MaLR -296 83 15 1 1867 250 255 64 101 chr1 168091987 168092096 -29103336 - B3A SINE B2 0 198 94 1 1867 731 293 103 48 chr1 168092298 168092570 -29102862 + B4A SINE B4 6 292 0 1 1867 375 23 0 0 chr1 168092573 168092617 -29102815 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1867 2522 151 98 17 chr1 168092976 168093453 -29101979 - RLTR28 LTR ERVL -4 520 5 1 1867 333 118 0 0 chr1 168093453 168093504 -29101928 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1867 419 329 51 51 chr1 168093510 168093747 -29101685 - MIRb SINE MIR -23 245 9 1 1867 423 0 0 0 chr1 168097504 168097551 -29097881 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1867 273 305 126 8 chr1 168097943 168098006 -29097426 - MIR SINE MIR -27 235 160 1 1867 2381 139 5 53 chr1 168098006 168098400 -29097032 - ORR1C1 LTR MaLR -1 377 3 1 1867 273 305 126 8 chr1 168098400 168098455 -29096977 - MIR SINE MIR -103 159 103 1 1867 473 0 18 0 chr1 168098676 168098733 -29096699 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 1 1867 1130 80 18 6 chr1 168098733 168098890 -29096542 - B2_Mm1a SINE B2 -33 160 1 1 1867 243 61 0 0 chr1 168098992 168099025 -29096407 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1867 320 174 86 14 chr1 168099455 168099525 -29095907 - RSINE1 SINE B4 -36 129 55 1 1867 1175 78 12 0 chr1 168099635 168099802 -29095630 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1 1867 1077 94 0 0 chr1 168099802 168099940 -29095492 - B1_Mm SINE Alu -9 138 1 1 1867 257 342 95 19 chr1 168101188 168101346 -29094086 - L1MC4 LINE L1 -1166 6876 6707 1 1867 22 0 0 0 chr1 168101653 168101675 -29093757 + AT_rich Low_complexity Low_complexity 1 22 0 1 1867 1071 196 27 4 chr1 168101694 168101950 -29093482 + L1_Mur3 LINE L1 1600 1861 -4019 1 1867 347 247 0 47 chr1 168101948 168102033 -29093399 + Lx7 LINE L1 6649 6729 -967 1 1867 369 0 0 0 chr1 168102150 168102191 -29093241 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1867 417 351 86 42 chr1 168102194 168102739 -29092693 - L1M5 LINE L1 -1219 4927 4359 1 1867 309 274 27 20 chr1 168102741 168102890 -29092542 - L1M5 LINE L1 -3655 2491 2342 1 1867 589 218 231 0 chr1 168103059 168103206 -29092226 - B3A SINE B2 -16 182 2 1 1867 419 262 29 0 chr1 168103334 168103437 -29091995 - PB1D9 SINE Alu -12 108 3 1 1867 645 173 126 15 chr1 168103476 168103611 -29091821 - B1_Mur4 SINE Alu 0 150 1 1 1867 3990 174 74 62 chr1 168103729 168104622 -29090810 - RMER13B LTR ERVK -4 904 1 1 1867 640 215 0 17 chr1 168104662 168104842 -29090590 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1867 3771 44 5 0 chr1 168104981 168105415 -29090017 + RLTR10C LTR ERVK 1 436 0 1 1867 1752 84 176 126 chr1 168105415 168105795 -29089637 + MMERVK10C-int LTR ERVK 1 399 -7182 1 1867 17053 45 0 1 chr1 168105793 168107891 -29087541 + MMERVK10C-int LTR ERVK 870 2964 -4617 1 1867 11653 36 1 0 chr1 168107881 168109286 -29086146 + MMERVK10C-int LTR ERVK 4404 5810 -1771 1 1867 7921 30 0 0 chr1 168109277 168110208 -29085224 + MMERVK10C-int LTR ERVK 6651 7581 0 1 1867 3785 42 5 0 chr1 168110208 168110642 -29084790 + RLTR10C LTR ERVK 1 436 0 1 1867 603 266 74 129 chr1 168110662 168111042 -29084390 - ORR1E LTR MaLR 0 359 1 1 1867 602 313 100 22 chr1 168111108 168111338 -29084094 + MER57D LTR ERV1 5 265 -146 1 1867 246 179 0 0 chr1 168111553 168111609 -29083823 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 1 1867 676 208 200 11 chr1 168112075 168112250 -29083182 - B3 SINE B2 -6 210 3 1 1867 591 208 0 0 chr1 168112877 168113007 -29082425 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1867 183 282 0 0 chr1 168113733 168113772 -29081660 + L4 LINE RTE 1787 1825 -204 1 1867 307 289 111 52 chr1 168114054 168114189 -29081243 + ID_B1 SINE B4 81 223 -1 1 1867 397 265 49 0 chr1 168116246 168116348 -29079084 - PB1D10 SINE Alu -10 107 1 1 1867 230 341 115 40 chr1 168116561 168116839 -29078593 + L1MC LINE L1 5330 5628 -2254 1 1867 820 257 24 114 chr1 168117324 168117446 -29077986 - MER77 LTR ERVL -371 236 136 1 1867 2255 33 11 4 chr1 168117446 168117723 -29077709 - L1_Mus1 LINE L1 -14 6553 6275 1 1867 820 257 24 114 chr1 168117723 168117855 -29077577 - MER77 LTR ERVL -472 135 5 1 1867 316 246 131 92 chr1 168118206 168118387 -29077045 + L1MC5 LINE L1 7299 7488 -473 1 1867 1836 153 90 13 chr1 168118387 168118765 -29076667 - MTB_Mm LTR MaLR 0 407 1 2 1867 316 246 131 92 chr1 168118765 168118789 -29076643 + L1MC5 LINE L1 7489 7512 -449 1 1867 265 326 21 0 chr1 168119238 168119333 -29076099 - L2 LINE L2 -2176 1243 1147 2 1867 2107 133 23 17 chr1 168119359 168119711 -29075721 - ORR1B1 LTR MaLR 0 394 41 2 1867 355 318 104 88 chr1 168119721 168119854 -29075578 - L2 LINE L2 -2299 1120 998 2 1867 865 172 21 0 chr1 168119854 168119999 -29075433 + B1_Mur1 SINE Alu 2 149 0 2 1867 355 318 104 88 chr1 168119999 168120306 -29075126 - L2 LINE L2 -2422 997 673 2 1867 191 36 36 0 chr1 168120412 168120440 -29074992 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 2 1867 245 239 155 0 chr1 168121093 168121220 -29074212 + MER34 LTR ERV1 387 561 -10 2 1867 180 0 0 0 chr1 168121377 168121397 -29074035 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1867 1255 27 0 0 chr1 168123272 168123419 -29072013 - B1_Mm SINE Alu 0 147 1 2 1867 2303 33 112 0 chr1 168124123 168124427 -29071005 - ORR1A1 LTR MaLR -8 338 1 2 1867 269 302 52 0 chr1 168124638 168124734 -29070698 - L1_Mur2 LINE L1 -3168 2709 2609 2 1867 3125 74 5 0 chr1 168124797 168125202 -29070230 - MTB_Mm LTR MaLR 0 407 1 2 1867 331 321 165 8 chr1 168125277 168125519 -29069913 - L1M4c LINE L1 -3654 2725 2446 2 1867 479 330 153 27 chr1 168125665 168126180 -29069252 - L1M4c LINE L1 -4690 1879 1250 2 1867 2761 161 55 4 chr1 168126368 168126891 -29068541 - RMER4B LTR ERVK -58 527 4 2 1867 767 198 132 55 chr1 168127202 168127533 -29067899 - MTD LTR MaLR -14 405 18 2 1867 472 266 99 78 chr1 168127875 168128093 -29067339 - L1M4 LINE L1 -845 5301 5089 2 1867 6359 27 25 4 chr1 168128093 168128844 -29066588 + L1Md_F2 LINE L1 5814 6580 -2 2 1867 472 266 99 78 chr1 168128844 168128959 -29066473 - L1M4 LINE L1 -1058 5088 4961 2 1867 375 306 108 36 chr1 168128963 168129286 -29066146 - MLT1A1 LTR MaLR 0 408 27 2 1867 3986 163 117 12 chr1 168129799 168130605 -29064827 + RMER19B LTR ERVK 1 890 -12 2 1867 22 56 0 0 chr1 168131024 168131060 -29064372 + AT_rich Low_complexity Low_complexity 1 36 0 2 1867 1169 75 0 0 chr1 168131063 168131210 -29064222 - B1_Mus2 SINE Alu 0 147 1 2 1867 493 298 87 62 chr1 168132719 168132880 -29062552 + RSINE1 SINE B4 1 165 0 2 1867 880 95 50 14 chr1 168132880 168133374 -29062058 + (CA)n Simple_repeat Simple_repeat 1 511 0 2 1867 371 352 110 43 chr1 168133424 168133724 -29061708 - L2 LINE L2 -1668 1751 1432 2 1867 369 0 0 0 chr1 168133849 168133890 -29061542 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1867 398 299 36 29 chr1 168133953 168134091 -29061341 - B1F SINE Alu -9 140 2 2 1867 285 303 91 0 chr1 168134117 168134216 -29061216 - L2 LINE L2 -2142 1277 1170 2 1867 22 0 0 0 chr1 168134577 168134599 -29060833 + AT_rich Low_complexity Low_complexity 1 22 0 2 1867 243 250 0 18 chr1 168134683 168134740 -29060692 - L2 LINE L2 -2751 668 613 2 1867 439 226 206 11 chr1 168135472 168135652 -29059780 + MTD LTR MaLR 182 374 -45 2 1867 528 211 138 0 chr1 168136319 168136428 -29059004 - RSINE1 SINE B4 -31 134 11 2 1867 407 288 159 18 chr1 168137277 168137440 -29057992 + B3 SINE B2 1 186 -30 2 1867 968 108 43 0 chr1 168137558 168137697 -29057735 - MTA_Mm LTR MaLR 0 396 252 2 1867 1343 75 26 11 chr1 168137680 168137869 -29057563 + MTB LTR MaLR 209 400 0 2 1867 528 260 52 30 chr1 168138039 168138174 -29057258 - B3A SINE B2 -22 176 39 2 1867 236 146 306 92 chr1 168138097 168138195 -29057237 - B4 SINE B4 -173 119 1 2 1867 465 298 114 0 chr1 168140270 168140401 -29055031 - B1F2 SINE Alu 0 149 4 2 1867 9012 103 18 4 chr1 168141023 168142933 -29052499 + L1Md_F LINE L1 578 2514 -1303 2 1867 4904 54 16 2 chr1 168142933 168143563 -29051869 + L1_Mus2 LINE L1 5927 6565 -1 2 1867 207 0 0 0 chr1 168143569 168143592 -29051840 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1867 21 36 0 0 chr1 168143688 168143716 -29051716 + AT_rich Low_complexity Low_complexity 1 28 0 2 1867 510 301 60 25 chr1 168143752 168143953 -29051479 + Kanga1 DNA Tc2 1242 1449 -296 2 1867 267 132 0 86 chr1 168144485 168144543 -29050889 + L1MC4 LINE L1 663 715 -5500 2 1867 279 234 195 19 chr1 168144629 168144834 -29050598 + L1MC4 LINE L1 855 1095 -5120 2 1867 219 103 0 0 chr1 168145218 168145257 -29050175 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1867 660 203 38 0 chr1 168145598 168145731 -29049701 + B1_Mur2 SINE Alu 5 142 -7 2 1867 587 297 127 66 chr1 168146932 168147235 -29048197 + L1MC4 LINE L1 6785 7094 -948 2 1867 1085 89 0 0 chr1 168147235 168147381 -29048051 - B1_Mm SINE Alu 0 147 2 2 1867 587 297 127 66 chr1 168147381 168147517 -29047915 + L1MC4 LINE L1 7095 7251 -791 2 1867 239 296 19 0 chr1 168147556 168147610 -29047822 - BC1_Mm scRNA scRNA -83 69 15 2 1867 436 237 48 55 chr1 168147692 168147857 -29047575 + L1MC4 LINE L1 7384 7547 -495 2 1867 24300 130 14 15 chr1 168147863 168152943 -29042489 + L1_Mus3 LINE L1 395 5303 -580 2 1867 2720 74 32 5 chr1 168152943 168153312 -29042120 + L1Md_F2 LINE L1 6193 6571 -11 2 1867 22219 108 35 14 chr1 168153312 168154615 -29040817 + L1_Mus3 LINE L1 5298 6633 -5 2 1867 272 244 21 95 chr1 168154645 168154740 -29040692 + MT2B2 LTR ERVL 150 237 -347 2 1867 423 211 13 0 chr1 168154664 168154740 -29040692 + PB1D10 SINE Alu 3 79 -38 2 1867 719 278 109 10 chr1 168154769 168155173 -29040259 + L1MC4 LINE L1 7599 8042 0 2 1867 21 57 0 0 chr1 168155186 168155221 -29040211 + AT_rich Low_complexity Low_complexity 1 35 0 2 1867 331 231 364 0 chr1 168155412 168155561 -29039871 + B3 SINE B2 3 206 -10 2 1867 384 322 148 8 chr1 168157244 168157488 -29037944 - B4A SINE B4 -14 278 1 2 1867 444 290 57 14 chr1 168157525 168157665 -29037767 - RSINE1 SINE B4 -17 148 3 2 1867 749 204 90 25 chr1 168157684 168157885 -29037547 + B3 SINE B2 1 214 -2 2 1867 189 74 0 0 chr1 168158154 168158181 -29037251 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1867 232 223 72 176 chr1 168158536 168158661 -29036771 + ID_B1 SINE B4 105 216 -8 2 1867 342 298 0 34 chr1 168158779 168158897 -29036535 + L1MEg LINE L1 564 677 -5565 2 1867 2856 102 27 5 chr1 168159005 168159446 -29035986 - L1_Mus3 LINE L1 -6 6632 6182 2 1867 189 0 0 0 chr1 168159565 168159586 -29035846 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1867 778 172 7 46 chr1 168159776 168159928 -29035504 - B1_Mus1 SINE Alu 0 148 3 2 1867 233 280 110 70 chr1 168160250 168160350 -29035082 + B1F2 SINE Alu 41 144 -5 2 1867 398 326 182 80 chr1 168160360 168161003 -29034429 + L1MEg LINE L1 4467 5185 -961 2 1867 344 257 40 0 chr1 168161003 168161077 -29034355 + ID4_ SINE ID 2 78 -5 2 1867 398 326 182 80 chr1 168161077 168161223 -29034209 + L1MEg LINE L1 5186 5337 -809 2 1867 21 36 0 0 chr1 168161252 168161280 -29034152 + AT_rich Low_complexity Low_complexity 1 28 0 2 1867 392 227 53 0 chr1 168161813 168161888 -29033544 - RSINE1 SINE B4 -83 82 4 2 1867 403 305 21 21 chr1 168162581 168162725 -29032707 - B1F SINE Alu -5 144 1 2 1867 545 253 102 43 chr1 168162746 168162932 -29032500 - B3A SINE B2 -1 197 1 2 1867 253 325 15 146 chr1 168163272 168163409 -29032023 + B4A SINE B4 48 166 -126 2 1867 233 250 56 67 chr1 168163411 168163501 -29031931 + RSINE1 SINE B4 77 165 0 2 1867 26 30 0 0 chr1 168163865 168163898 -29031534 + AT_rich Low_complexity Low_complexity 1 33 0 2 1867 243 0 0 0 chr1 168164739 168164766 -29030666 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1868 508 218 38 13 chr1 168166243 168166401 -29029031 - L1MA7 LINE L1 -2 6289 6128 2 1868 319 276 45 54 chr1 168166705 168166816 -29028616 - B4 SINE B4 -22 270 161 2 1868 210 277 31 0 chr1 168166821 168166886 -29028546 - ID_B1 SINE B4 -90 134 68 2 1868 832 223 26 5 chr1 168167573 168167767 -29027665 - B3 SINE B2 -18 198 1 2 1868 352 295 8 54 chr1 168169655 168169784 -29025648 - RMER10B LTR ERVL -7 391 269 2 1868 333 272 181 45 chr1 168171046 168171400 -29024032 + L1ME1 LINE L1 5606 6007 -172 2 1868 838 217 94 11 chr1 168171504 168171695 -29023737 - B3 SINE B2 -9 207 1 2 1868 1166 93 60 16 chr1 168171849 168172034 -29023398 - B2_Mm2 SINE B2 -1 194 2 2 1868 286 182 297 20 chr1 168172365 168172466 -29022966 - RSINE1 SINE B4 -35 130 2 2 1868 858 109 0 0 chr1 168172787 168172915 -29022517 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 2 1868 321 242 30 10 chr1 168173712 168173812 -29021620 - L1MA10 LINE L1 -34 6300 6199 2 1868 1291 269 160 44 chr1 168174090 168174178 -29021254 - L1MEc LINE L1 -5416 984 860 2 1868 252 86 0 0 chr1 168174178 168174213 -29021219 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1868 1291 269 160 44 chr1 168174213 168174963 -29020469 - L1MEc LINE L1 -5541 859 49 2 1868 193 266 202 44 chr1 168175011 168175125 -29020307 - L2c LINE L2 -223 3164 3033 2 1868 525 193 73 33 chr1 168175312 168175462 -29019970 - L1MA8 LINE L1 -3 6288 6133 2 1868 652 248 34 20 chr1 168175489 168175637 -29019795 - RSINE1 SINE B4 -5 160 11 2 1868 451 316 30 15 chr1 168175751 168175886 -29019546 + RSINE1 SINE B4 4 140 -25 2 1868 311 194 13 130 chr1 168176148 168176225 -29019207 + ID4_ SINE ID 7 74 -9 2 1868 383 324 174 11 chr1 168176661 168176942 -29018490 - L2c LINE L2 -945 2474 2148 2 1868 304 315 114 29 chr1 168177065 168177346 -29018086 - L2a LINE L2 -126 3300 2996 2 1868 22 0 0 0 chr1 168180592 168180614 -29014818 + AT_rich Low_complexity Low_complexity 1 22 0 2 1868 217 0 61 0 chr1 168181207 168181240 -29014192 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1868 272 27 0 26 chr1 168181545 168181563 -29013869 + (GAA)n Simple_repeat Simple_repeat 3 20 0 2 1868 1287 84 0 0 chr1 168181563 168181741 -29013691 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1868 272 27 0 26 chr1 168181741 168181760 -29013672 + (GAA)n Simple_repeat Simple_repeat 3 21 0 2 1868 297 269 67 42 chr1 168182420 168182540 -29012892 + MIRb SINE MIR 17 139 -129 2 1868 477 138 0 0 chr1 168183735 168183815 -29011617 + (CCCCCT)n Simple_repeat Simple_repeat 6 85 0 2 1868 261 0 0 0 chr1 168183954 168183983 -29011449 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1868 21 0 0 0 chr1 168184219 168184240 -29011192 + GC_rich Low_complexity Low_complexity 1 21 0 2 1868 36 82 0 0 chr1 168184382 168184467 -29010965 + GC_rich Low_complexity Low_complexity 1 85 0 2 1868 258 32 0 0 chr1 168184712 168184743 -29010689 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1868 228 323 0 0 chr1 168186883 168186948 -29008484 + C-rich Low_complexity Low_complexity 5 69 0 3 1868 182 37 37 0 chr1 168187122 168187149 -29008283 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1868 211 246 77 0 chr1 168187739 168187804 -29007628 - L2c LINE L2 -46 3341 3272 3 1868 1442 112 1 2 chr1 168188018 168188223 -29007209 + Lx3B LINE L1 6335 6532 -476 3 1868 255 291 113 3 chr1 168188580 168188736 -29006696 + MIRc SINE MIR 11 194 -14 3 1868 180 97 0 0 chr1 168188835 168188866 -29006566 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1868 203 299 118 27 chr1 168189159 168189269 -29006163 - MIRb SINE MIR -45 223 104 3 1868 420 158 0 0 chr1 168189935 168190011 -29005421 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1868 220 306 47 99 chr1 168190772 168190964 -29004468 - L2c LINE L2 -232 3155 2974 3 1868 940 96 18 0 chr1 168191193 168191347 -29004085 + B2_Mm2 SINE B2 1 170 -46 3 1868 369 0 0 0 chr1 168191348 168191389 -29004043 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 3 1868 788 249 204 0 chr1 168191643 168191908 -29003524 - MTE2b LTR MaLR -39 340 22 3 1868 332 228 108 50 chr1 168192119 168192239 -29003193 - MLT1J LTR MaLR -358 154 28 3 1868 250 218 0 0 chr1 168192447 168192502 -29002930 + RLTR12B LTR ERVK 43 97 -431 3 1868 373 273 92 68 chr1 168192908 168193200 -29002232 + BGLII_B LTR ERVK 116 405 -36 3 1868 980 180 33 5 chr1 168195194 168195378 -29000054 - B3A SINE B2 -5 193 5 3 1868 294 324 82 19 chr1 168195610 168195812 -28999620 + MIRb SINE MIR 5 222 -46 3 1868 342 333 56 6 chr1 168196037 168196197 -28999235 - MIR SINE MIR -18 244 77 3 1868 183 80 0 0 chr1 168196827 168196852 -28998580 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1868 1607 36 0 10 chr1 168196864 168197059 -28998373 - B2_Mm1a SINE B2 0 193 1 3 1868 825 161 21 0 chr1 168197929 168198072 -28997360 + B1_Mus2 SINE Alu 2 147 0 3 1868 281 68 0 22 chr1 168198086 168198131 -28997301 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 3 1868 1105 281 37 3 chr1 168199035 168199335 -28996097 + MTE2a LTR MaLR 1 310 -69 3 1868 243 283 29 29 chr1 168203274 168203376 -28992056 - L2 LINE L2 -898 2521 2420 3 1868 14762 83 31 4 chr1 168203564 168206355 -28989077 + L1_Mus1 LINE L1 3725 6654 0 3 1868 203 266 50 50 chr1 168206922 168207021 -28988411 - L2 LINE L2 -898 2521 2423 3 1868 2276 142 60 30 chr1 168207561 168207960 -28987472 - Lx5 LINE L1 -3 7047 6637 3 1868 417 20 0 0 chr1 168208279 168208329 -28987103 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1868 180 0 0 0 chr1 168210127 168210147 -28985285 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1868 296 300 61 8 chr1 168210156 168210287 -28985145 - MLT1K LTR MaLR -441 154 17 3 1868 243 0 0 0 chr1 168210563 168210590 -28984842 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1868 321 296 73 15 chr1 168211933 168212070 -28983362 + MER20 DNA MER1_type 5 149 -70 3 1868 776 265 81 15 chr1 168215853 168216125 -28979307 + B4A SINE B4 3 292 0 3 1868 417 325 98 39 chr1 168217669 168217989 -28977443 + MER102b DNA MER1_type 3 339 -2 3 1868 276 310 20 10 chr1 168218025 168218126 -28977306 - MER94 DNA AcHobo -22 112 11 3 1868 180 295 66 0 chr1 168218143 168218204 -28977228 - MIR SINE MIR -55 153 89 3 1868 556 207 0 26 chr1 168218334 168218448 -28976984 + PB1D10 SINE Alu 1 111 -6 3 1868 1704 234 39 27 chr1 168219086 168219498 -28975934 - Lx6 LINE L1 -32 7428 7012 3 1868 266 83 0 0 chr1 168219962 168219998 -28975434 - U2 snRNA snRNA -152 36 1 3 1868 551 15 0 14 chr1 168220088 168220157 -28975275 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1868 314 291 20 20 chr1 168220395 168220546 -28974886 + MER33 DNA MER1_type 174 324 0 3 1868 278 67 22 0 chr1 168222621 168222666 -28972766 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 3 1868 992 46 0 0 chr1 168222668 168222798 -28972634 - B1_Mus1 SINE Alu 0 148 19 3 1868 354 262 71 60 chr1 168222695 168222878 -28972554 - MT2B2 LTR ERVL -306 278 94 3 1868 453 287 14 56 chr1 168222987 168223131 -28972301 - B1F1 SINE Alu -6 143 6 3 1868 365 260 130 0 chr1 168224224 168224324 -28971108 - PB1D7 SINE Alu 0 120 8 3 1868 185 245 0 0 chr1 168226503 168226556 -28968876 - L2c LINE L2 -239 3148 3096 3 1868 380 241 27 0 chr1 168227586 168227683 -28967749 - B1_Mur2 SINE Alu -1 148 43 3 1868 195 343 87 66 chr1 168228530 168229001 -28966431 + L2 LINE L2 2277 2757 -662 3 1868 236 361 0 9 chr1 168229166 168229275 -28966157 - AmnSINE1 SINE SINE -80 495 388 3 1868 306 73 0 0 chr1 168229729 168229770 -28965662 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1868 297 365 61 0 chr1 168229770 168229885 -28965547 - B1F1 SINE Alu -27 122 1 3 1868 408 204 23 9 chr1 168229908 168230007 -28965425 + B1F2 SINE Alu 26 120 0 3 1868 22 0 0 0 chr1 168230282 168230304 -28965128 + AT_rich Low_complexity Low_complexity 1 22 0 3 1868 339 121 0 0 chr1 168231028 168231086 -28964346 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 3 1868 275 310 50 25 chr1 168231100 168231219 -28964213 - L2b LINE L2 -24 3402 3254 3 1868 387 73 0 0 chr1 168232288 168232343 -28963089 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 3 1868 184 298 0 0 chr1 168232609 168232656 -28962776 + L2b LINE L2 3313 3359 -16 3 1868 270 136 0 0 chr1 168232833 168232877 -28962555 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1868 611 305 76 0 chr1 168234122 168234358 -28961074 + B4A SINE B4 39 292 0 3 1868 231 314 12 0 chr1 168235247 168235333 -28960099 - MIR3 SINE MIR -21 187 101 3 1868 579 236 59 24 chr1 168235811 168235980 -28959452 + MER58A DNA MER1_type 50 224 0 3 1868 568 291 78 16 chr1 168236326 168236518 -28958914 + B4A SINE B4 3 206 -86 3 1868 360 0 0 0 chr1 168236562 168236602 -28958830 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1868 261 0 0 0 chr1 168236602 168236631 -28958801 + (CAT)n Simple_repeat Simple_repeat 3 31 0 3 1868 221 330 33 67 chr1 168238306 168238426 -28957006 - MIR SINE MIR -62 206 84 3 1868 433 162 0 0 chr1 168240387 168240455 -28954977 - ID4 SINE ID -14 69 2 3 1868 180 0 0 0 chr1 168241182 168241202 -28954230 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 3 1868 673 233 67 29 chr1 168244470 168244678 -28950754 + B3 SINE B2 1 216 0 3 1868 414 214 45 0 chr1 168244704 168244793 -28950639 + B3 SINE B2 1 93 -123 3 1868 342 0 0 0 chr1 168244803 168244841 -28950591 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1868 1062 170 90 0 chr1 168244912 168245112 -28950320 + ID_B1 SINE B4 1 218 -6 3 1868 24 0 0 0 chr1 168247693 168247717 -28947715 + AT_rich Low_complexity Low_complexity 1 24 0 3 1868 316 326 101 26 chr1 168247805 168248415 -28947017 - L1MEg LINE L1 -4494 1672 993 3 1868 1019 87 65 0 chr1 168248415 168248553 -28946879 - B1_Mm SINE Alu 0 147 1 3 1868 316 343 80 19 chr1 168248553 168248610 -28946822 - L1MEg LINE L1 -5250 992 938 3 1868 230 330 10 10 chr1 168249610 168249714 -28945718 + Lx9 LINE L1 7307 7410 -234 3 1868 2980 214 161 30 chr1 168250100 168250651 -28944781 - Lx7 LINE L1 -1093 6603 6012 3 1868 2099 152 39 47 chr1 168250651 168251032 -28944400 + ORR1C1 LTR MaLR 1 378 0 3 1868 3283 191 60 78 chr1 168251032 168251878 -28943554 - Lx7 LINE L1 -5 5875 5045 3 1868 3839 192 115 34 chr1 168251881 168252722 -28942710 + Lx7 LINE L1 6674 7577 -119 3 1868 615 27 0 0 chr1 168252722 168252795 -28942637 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1868 3839 192 115 34 chr1 168252795 168252899 -28942533 + Lx7 LINE L1 7578 7695 -1 3 1868 245 335 118 103 chr1 168252912 168253301 -28942131 - MLT1K LTR MaLR -10 585 191 3 1868 766 154 0 20 chr1 168254073 168254219 -28941213 + URR1B DNA MER1_type 83 225 0 3 1868 334 279 24 67 chr1 168254219 168254238 -28941194 - CYRA11_Mm Unknown Y-chromosome -305 312 155 3 1868 737 274 153 16 chr1 168254403 168254746 -28940686 - MTD LTR MaLR -21 398 7 3 1868 384 377 5 28 chr1 168254784 168254997 -28940435 + MLT1A LTR MaLR 167 374 0 3 1868 26 30 0 0 chr1 168255416 168255449 -28939983 + AT_rich Low_complexity Low_complexity 1 33 0 3 1868 760 179 8 3 chr1 168255525 168255674 -28939758 + B1_Mus2 SINE Alu 5 150 0 3 1868 216 0 0 0 chr1 168256790 168256814 -28938618 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1868 252 0 0 0 chr1 168257063 168257091 -28938341 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1868 757 291 20 123 chr1 168257094 168257451 -28937981 - MTE2a LTR MaLR -56 323 4 3 1868 270 194 0 0 chr1 168257922 168257984 -28937448 + CT-rich Low_complexity Low_complexity 1 62 0 3 1868 252 0 0 0 chr1 168257984 168258012 -28937420 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1868 360 0 0 0 chr1 168258174 168258214 -28937218 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1868 327 25 0 0 chr1 168259013 168259053 -28936379 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1868 222 322 8 34 chr1 168259443 168259562 -28935870 - L2a LINE L2 0 3426 3311 3 1868 319 289 183 0 chr1 168259931 168260073 -28935359 + MLT1J LTR MaLR 24 191 -321 3 1868 356 258 169 19 chr1 168260236 168260390 -28935042 + MTE2a LTR MaLR 1 177 -202 3 1868 1020 227 38 10 chr1 168260392 168260601 -28934831 + B3 SINE B2 2 216 0 3 1868 672 207 29 65 chr1 168260639 168260862 -28934570 + MTE2a LTR MaLR 202 407 -14 3 1868 330 224 128 18 chr1 168261387 168261496 -28933936 + B4A SINE B4 164 284 -8 3 1868 323 349 6 0 chr1 168261515 168261681 -28933751 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 1868 189 0 0 0 chr1 168261886 168261907 -28933525 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1868 244 363 0 22 chr1 168262088 168262271 -28933161 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1868 322 277 25 13 chr1 168262370 168262527 -28932905 + (CA)n Simple_repeat Simple_repeat 1 159 0 4 1868 373 324 0 0 chr1 168262552 168262697 -28932735 + (CA)n Simple_repeat Simple_repeat 2 146 0 4 1868 241 343 6 27 chr1 168262732 168262915 -28932517 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1868 330 335 6 0 chr1 168263021 168263200 -28932232 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1868 405 196 108 20 chr1 168263326 168263449 -28931983 - B1F SINE Alu -6 143 13 4 1868 741 297 10 15 chr1 168264550 168264748 -28930684 + B3A SINE B2 1 197 -1 4 1868 613 156 86 0 chr1 168264760 168264888 -28930544 + Lx2A1 LINE L1 6868 7006 -2 4 1868 1413 205 39 31 chr1 168265028 168265385 -28930047 - RMER19C LTR ERVK -1 610 251 4 1868 1260 249 2 84 chr1 168265382 168265786 -28929646 + RMER19C LTR ERVK 240 610 -1 4 1868 521 253 53 45 chr1 168265951 168266138 -28929294 - MTE2b LTR MaLR -13 366 192 4 1868 1900 274 15 8 chr1 168266160 168266631 -28928801 + Lx8 LINE L1 6263 6736 -737 4 1868 237 65 0 0 chr1 168266734 168266765 -28928667 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1868 630 240 0 0 chr1 168266784 168266955 -28928477 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 1868 1180 75 0 0 chr1 168267118 168267265 -28928167 + B1_Mm SINE Alu 1 147 0 4 1868 216 0 0 0 chr1 168267265 168267289 -28928143 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1868 582 256 54 0 chr1 168267366 168267495 -28927937 - B1_Mur1 SINE Alu -13 136 1 4 1868 489 316 24 65 chr1 168267979 168268148 -28927284 - B4A SINE B4 -8 284 123 4 1868 2221 232 104 22 chr1 168268542 168269189 -28926243 + L1MC1 LINE L1 5542 6241 -92 4 1868 1353 201 115 20 chr1 168269984 168270021 -28925411 - RLTR20B3 LTR ERVK -57 520 483 4 1868 387 0 0 0 chr1 168270021 168270064 -28925368 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1868 1353 206 114 25 chr1 168270064 168270474 -28924958 - RLTR20B3 LTR ERVK -95 482 32 4 1868 731 292 69 46 chr1 168270939 168271244 -28924188 - MLT1C LTR MaLR -3 464 153 4 1868 328 252 47 75 chr1 168271250 168271357 -28924075 + PB1 SINE Alu 8 111 -9 4 1868 1525 150 163 91 chr1 168271408 168271782 -28923650 + RMER21B LTR ERV1 1 401 -441 4 1868 389 210 38 98 chr1 168271777 168271909 -28923523 - RMER19B LTR ERVK -471 431 308 4 1868 427 147 200 0 chr1 168272219 168272314 -28923118 - ORR1D1 LTR MaLR 0 384 271 4 1868 272 242 39 69 chr1 168272314 168272416 -28923016 - L1MC LINE L1 -2336 5546 5448 4 1868 1157 192 3 138 chr1 168272421 168272741 -28922691 - ORR1D1 LTR MaLR -97 277 1 4 1868 365 323 106 46 chr1 168273655 168273957 -28921475 - L1MC LINE L1 -2115 5767 5448 4 1868 454 205 24 0 chr1 168275079 168275162 -28920270 - B1_Mur4 SINE Alu -57 93 9 4 1868 212 333 48 0 chr1 168275089 168275173 -28920259 - B4A SINE B4 -125 167 80 4 1868 286 296 66 66 chr1 168276168 168276349 -28919083 + MIR SINE MIR 1 181 -81 4 1868 872 295 87 17 chr1 168276445 168276849 -28918583 - L1M2 LINE L1 -1937 4206 3775 4 1868 213 196 0 0 chr1 168276859 168276905 -28918527 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1868 327 239 22 43 chr1 168276909 168277001 -28918431 - Lx8 LINE L1 -1 7472 7383 4 1868 408 40 0 0 chr1 168277014 168277064 -28918368 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1868 1684 233 90 43 chr1 168277064 168277575 -28917857 - Lx8 LINE L1 -142 7331 6797 4 1868 1127 85 67 0 chr1 168277581 168277746 -28917686 + B2_Mm2 SINE B2 15 190 -5 4 1868 286 217 43 0 chr1 168277747 168277816 -28917616 - Lx8 LINE L1 -671 6802 6731 4 1868 307 215 0 25 chr1 168277826 168277907 -28917525 - L1_Mur3 LINE L1 -2136 3744 3666 4 1868 502 289 89 4 chr1 168277905 168278141 -28917291 + L1M2 LINE L1 4238 4493 -1650 4 1868 836 189 223 0 chr1 168278184 168278359 -28917073 + URR1B DNA MER1_type 12 225 0 4 1868 1675 305 69 83 chr1 168278366 168278724 -28916708 + L1_Rod LINE L1 4440 4793 -1054 4 1868 750 53 0 0 chr1 168278724 168278819 -28916613 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 4 1868 546 32 516 0 chr1 168278819 168278912 -28916520 - B1_Mus2 SINE Alu -2 145 5 4 1868 803 194 111 6 chr1 168278918 168279099 -28916333 - B3 SINE B2 -14 202 3 4 1868 1675 305 69 83 chr1 168279099 168279304 -28916128 + L1_Rod LINE L1 4796 4973 -874 4 1868 1129 159 104 0 chr1 168279304 168279505 -28915927 + URR1A DNA MER1_type 5 226 0 4 1868 1675 305 69 83 chr1 168279505 168279935 -28915497 + L1_Rod LINE L1 4974 5417 -430 4 1868 225 0 0 0 chr1 168279935 168279960 -28915472 + (CAAAC)n Simple_repeat Simple_repeat 3 27 0 4 1868 1675 305 69 83 chr1 168279960 168280385 -28915047 + L1_Rod LINE L1 5418 5843 -4 4 1868 623 243 243 0 chr1 168280706 168280928 -28914504 + B4 SINE B4 4 279 -13 4 1868 873 151 3 0 chr1 168280951 168281243 -28914189 + (CA)n Simple_repeat Simple_repeat 1 292 0 4 1868 1945 182 2 81 chr1 168281246 168281652 -28913780 - ORR1C1 LTR MaLR -4 374 1 4 1868 216 0 0 0 chr1 168281686 168281710 -28913722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1868 487 315 27 27 chr1 168281715 168281898 -28913534 + MER2 DNA MER2_type 92 274 -71 4 1868 2191 123 15 6 chr1 168282322 168282656 -28912776 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1868 22891 71 32 14 chr1 168282656 168285670 -28909762 + IAPEz-int LTR ERVK 8 3076 -3405 4 1868 6948 42 20 11 chr1 168285656 168286498 -28908934 + IAPEz-int LTR ERVK 5630 6479 -2 4 1868 2191 123 15 6 chr1 168286500 168286834 -28908598 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1868 2870 28 2 178 chr1 168286839 168287312 -28908120 + RLTR10 LTR ERVK 1 390 0 4 1868 16551 27 26 1 chr1 168287322 168289218 -28906214 + RLTR10-int LTR ERVK 41 1984 -3 4 1868 2870 28 2 178 chr1 168289220 168289693 -28905739 + RLTR10 LTR ERVK 1 390 0 4 1868 2268 23 4 0 chr1 168289703 168289963 -28905469 + RLTR10-int LTR ERVK 41 301 -1686 4 1868 233 292 73 120 chr1 168290773 168290964 -28904468 - LTR88c LTR Genie? -554 308 127 4 1868 231 60 60 0 chr1 168291012 168291062 -28904370 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1868 1377 185 54 157 chr1 168291746 168292180 -28903252 - RLTR18B LTR ERVK -107 405 1 4 1868 1430 187 14 29 chr1 168292180 168292453 -28902979 - MTD LTR MaLR -150 269 1 4 1868 337 233 122 0 chr1 168292567 168292657 -28902775 + RSINE1 SINE B4 4 104 -61 4 1868 815 55 9 0 chr1 168292664 168292773 -28902659 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1868 247 333 14 0 chr1 168292838 168292907 -28902525 + MLT1C LTR MaLR 327 396 -71 4 1868 325 265 77 0 chr1 168293084 168293201 -28902231 + Charlie4a DNA MER1_type 365 490 -18 4 1868 481 251 107 7 chr1 168293814 168293984 -28901448 + L1M3 LINE L1 5478 5662 -506 4 1868 345 24 0 0 chr1 168293998 168294040 -28901392 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1868 740 95 7 29 chr1 168294117 168294246 -28901186 + RMER6A LTR ERVK 1 130 -331 4 1868 1570 129 57 4 chr1 168294681 168294945 -28900487 + RMER6A LTR ERVK 135 412 -344 4 1868 2743 120 7 30 chr1 168294945 168295409 -28900023 + RLTR11B LTR ERVK 1 453 0 4 1869 2952 316 65 63 chr1 168296623 168297201 -28898231 + MYSERV6-int LTR ERVK 58 902 -8057 4 1869 1034 106 116 12 chr1 168297201 168297373 -28898059 - B2_Mm1t SINE B2 -3 190 1 4 1869 2952 310 62 62 chr1 168297373 168297996 -28897436 + MYSERV6-int LTR ERVK 903 1531 -7428 4 1869 1241 28 7 0 chr1 168297996 168298141 -28897291 + B1_Mus2 SINE Alu 2 147 0 4 1869 2952 278 125 88 chr1 168298141 168299006 -28896426 + MYSERV6-int LTR ERVK 1324 2195 -4355 4 1869 196 286 94 12 chr1 168299006 168299091 -28896341 + L3 LINE CR1 3720 3811 -678 4 1869 2952 278 125 88 chr1 168299091 168299370 -28896062 + MYSERV6-int LTR ERVK 2196 2478 -4072 4 1869 1314 207 13 20 chr1 168299338 168299638 -28895794 + MYSERV6-int LTR ERVK 2791 3088 -5871 4 1869 8056 65 4 3 chr1 168299652 168301235 -28894197 - L1_Mus1 LINE L1 -1 6566 4983 4 1869 29 0 0 0 chr1 168301282 168301311 -28894121 + AT_rich Low_complexity Low_complexity 1 29 0 4 1869 9910 240 65 73 chr1 168301311 168301514 -28893918 + MYSERV-int LTR ERVK 2892 3097 -3453 4 1869 519 17 0 0 chr1 168301514 168301574 -28893858 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1869 9910 240 65 73 chr1 168301574 168301882 -28893550 + MYSERV-int LTR ERVK 3098 3400 -3150 4 1869 1253 34 0 7 chr1 168301882 168302029 -28893403 + B1_Mm SINE Alu 2 147 0 4 1869 9910 240 65 73 chr1 168302029 168304220 -28891212 + MYSERV-int LTR ERVK 3401 5524 -1026 4 1869 2914 106 0 135 chr1 168304220 168304724 -28890708 + RLTR10C LTR ERVK 1 436 0 4 1869 9910 240 65 73 chr1 168304724 168305688 -28889744 + MYSERV-int LTR ERVK 5525 6529 -21 4 1869 1709 147 105 23 chr1 168305690 168305712 -28889720 + RMER6A LTR ERVK 387 406 -350 4 1869 1921 136 33 212 chr1 168305712 168305838 -28889594 + RLTR11B LTR ERVK 1 102 -351 4 1869 924 144 0 0 chr1 168305838 168305984 -28889448 - B1_Mus1 SINE Alu 0 148 3 4 1869 1921 136 33 212 chr1 168305984 168306023 -28889409 + RLTR11B LTR ERVK 103 129 -324 4 1869 1130 55 0 40 chr1 168306023 168306174 -28889258 + B1_Mus2 SINE Alu 2 146 -1 4 1869 1921 136 33 212 chr1 168306174 168306559 -28888873 + RLTR11B LTR ERVK 130 453 0 4 1869 1709 147 105 23 chr1 168306559 168306878 -28888554 + RMER6A LTR ERVK 407 756 0 4 1869 386 276 141 47 chr1 168306895 168306957 -28888475 + L1MB2 LINE L1 5708 5780 -388 4 1869 351 0 0 0 chr1 168306957 168306996 -28888436 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1869 392 229 257 30 chr1 168306996 168307313 -28888119 + L1MB2 LINE L1 5781 6162 -6 4 1869 484 297 61 0 chr1 168307420 168307568 -28887864 + RSINE1 SINE B4 8 164 -1 4 1869 201 74 0 0 chr1 168307573 168307600 -28887832 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1869 1213 55 7 0 chr1 168308205 168308351 -28887081 + B1_Mus1 SINE Alu 1 147 -1 4 1869 240 184 16 39 chr1 168308368 168308439 -28886993 + B1_Mur4 SINE Alu 47 148 -2 4 1869 357 173 53 13 chr1 168308438 168308514 -28886918 + PB1D9 SINE Alu 1 79 -41 4 1869 504 0 0 0 chr1 168308526 168308582 -28886850 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1869 188 267 129 82 chr1 168308846 168308993 -28886439 - L2a LINE L2 -70 3356 3203 4 1869 30 27 0 0 chr1 168309098 168309135 -28886297 + GC_rich Low_complexity Low_complexity 1 37 0 4 1869 1008 77 0 0 chr1 168309290 168309433 -28885999 + (CCGAG)n Simple_repeat Simple_repeat 5 147 0 4 1869 29 28 0 0 chr1 168309847 168309883 -28885549 + GC_rich Low_complexity Low_complexity 1 36 0 4 1869 243 0 0 0 chr1 168310465 168310492 -28884940 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1869 21 0 0 0 chr1 168310982 168311003 -28884429 + AT_rich Low_complexity Low_complexity 1 21 0 4 1869 481 244 35 0 chr1 168311906 168312021 -28883411 - MLT1B LTR MaLR -29 361 243 4 1869 342 0 0 0 chr1 168312738 168312776 -28882656 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1869 424 241 125 21 chr1 168313269 168313299 -28882133 - RSINE1 SINE B4 -2 163 126 4 1869 222 37 0 0 chr1 168313299 168313326 -28882106 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1869 424 241 125 21 chr1 168313326 168313439 -28881993 - RSINE1 SINE B4 -40 125 6 4 1869 252 0 0 0 chr1 168313822 168313850 -28881582 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 4 1869 567 196 141 63 chr1 168313876 168314067 -28881365 + B3 SINE B2 1 206 -10 4 1869 1113 100 0 0 chr1 168314092 168314232 -28881200 + B1_Mus2 SINE Alu 1 140 -7 4 1869 668 245 107 0 chr1 168314307 168314466 -28880966 + B3A SINE B2 1 176 -22 4 1869 26 30 0 0 chr1 168314706 168314739 -28880693 + AT_rich Low_complexity Low_complexity 1 33 0 4 1869 25 0 0 0 chr1 168314788 168314813 -28880619 + AT_rich Low_complexity Low_complexity 1 25 0 4 1869 291 294 129 0 chr1 168315398 168315483 -28879949 - PB1D10 SINE Alu -16 101 6 5 1869 283 322 66 110 chr1 168316344 168316480 -28878952 + B4A SINE B4 45 174 -118 5 1869 383 0 21 0 chr1 168316527 168316574 -28878858 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1869 780 184 0 0 chr1 168316949 168317074 -28878358 - B1_Mm SINE Alu -1 146 22 5 1869 962 114 124 12 chr1 168317094 168317263 -28878169 - B2_Mm2 SINE B2 -5 190 3 5 1869 754 104 0 0 chr1 168317358 168317464 -28877968 - B2_Mm2 SINE B2 -88 107 2 5 1869 21 95 0 0 chr1 168317478 168317541 -28877891 + AT_rich Low_complexity Low_complexity 1 63 0 5 1869 343 242 52 52 chr1 168318332 168318428 -28877004 + PB1D10 SINE Alu 2 97 -20 5 1869 312 27 0 0 chr1 168320194 168320231 -28875201 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 5 1869 989 100 83 53 chr1 168320232 168320401 -28875031 - B2_Mm1a SINE B2 -18 175 2 5 1869 201 132 0 0 chr1 168320436 168320474 -28874958 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1869 323 263 66 99 chr1 168322372 168322524 -28872908 - RSINE1 SINE B4 -1 164 18 5 1869 647 55 358 0 chr1 168325282 168325391 -28870041 - B1_Mus1 SINE Alu 0 148 1 5 1869 780 242 10 40 chr1 168327728 168327926 -28867506 - B3A SINE B2 -5 193 2 5 1869 342 0 0 0 chr1 168327950 168327988 -28867444 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1869 628 216 128 7 chr1 168327991 168328140 -28867292 - B3A SINE B2 -30 168 2 5 1869 520 372 57 50 chr1 168328895 168330057 -28865375 - Kanga2_a DNA Tc2 -354 1391 246 5 1869 215 304 75 75 chr1 168330471 168330617 -28864815 - MIRb SINE MIR -78 190 45 5 1869 446 246 31 43 chr1 168330665 168330788 -28864644 + PB1D10 SINE Alu 1 116 -1 5 1869 218 245 0 86 chr1 168330807 168330865 -28864567 + ID4 SINE ID 25 77 -6 5 1869 423 0 0 0 chr1 168330974 168331021 -28864411 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1869 391 121 361 0 chr1 168331449 168331532 -28863900 - ID_B1 SINE B4 -5 219 107 5 1869 300 27 0 0 chr1 168332420 168332457 -28862975 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1869 1173 68 7 0 chr1 168332559 168332706 -28862726 - B1_Mus1 SINE Alu 0 148 1 5 1869 441 244 57 67 chr1 168332706 168332892 -28862540 + RLTR16 LTR ERVK 33 216 -289 5 1869 585 0 0 0 chr1 168333295 168333360 -28862072 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 5 1869 661 174 52 0 chr1 168335270 168335425 -28860007 - URR1A DNA MER1_type -8 218 56 5 1869 230 182 182 0 chr1 168336448 168336503 -28858929 - MIR SINE MIR -122 140 76 5 1869 239 236 92 28 chr1 168336742 168336851 -28858581 + L2c LINE L2 3015 3130 -257 5 1869 198 0 0 0 chr1 168338729 168338751 -28856681 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1869 261 319 23 62 chr1 168338857 168339034 -28856398 + L3 LINE CR1 4155 4324 -165 5 1869 459 0 0 0 chr1 168340443 168340494 -28854938 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1869 600 205 285 63 chr1 168340516 168340818 -28854614 - MER31B LTR ERV1 -97 369 1 5 1869 594 275 62 0 chr1 168340827 168341005 -28854427 - B3A SINE B2 -9 189 1 5 1869 23 0 0 0 chr1 168341266 168341289 -28854143 + AT_rich Low_complexity Low_complexity 1 23 0 5 1869 294 29 0 0 chr1 168341490 168341525 -28853907 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1869 1788 184 105 6 chr1 168341636 168341997 -28853435 - MTD LTR MaLR -21 398 2 5 1869 376 191 0 87 chr1 168342017 168342109 -28853323 - B3 SINE B2 -67 149 66 5 1869 331 190 0 0 chr1 168342659 168342717 -28852715 - B3A SINE B2 -140 58 1 5 1869 474 255 43 87 chr1 168343365 168343618 -28851814 + RLTR11B LTR ERVK 3 244 -209 5 1869 654 209 34 0 chr1 168343618 168343766 -28851666 + MYSERV6-int LTR ERVK 8376 8528 -431 5 1869 203 256 0 0 chr1 168344036 168344079 -28851353 + (TGG)n Simple_repeat Simple_repeat 3 45 0 5 1869 373 232 137 37 chr1 168344208 168344369 -28851063 - RMER20B LTR ERVK -208 419 243 5 1869 1530 197 10 7 chr1 168344574 168344865 -28850567 + MYSERV6-int LTR ERVK 8525 8816 -143 5 1869 3043 100 24 2 chr1 168344876 168345335 -28850097 - MT2C_Mm LTR ERVL -6 469 1 5 1869 687 161 31 86 chr1 168345335 168345498 -28849934 + MYSERV-int LTR ERVK 6392 6545 -5 5 1869 768 226 16 123 chr1 168345503 168345821 -28849611 + RLTR11B LTR ERVK 2 285 -168 5 1869 930 8 25 0 chr1 168346021 168346140 -28849292 + (CA)n Simple_repeat Simple_repeat 2 123 0 5 1869 471 198 0 0 chr1 168346218 168346309 -28849123 + ORR1D1 LTR MaLR 11 101 -273 5 1869 560 261 32 7 chr1 168346309 168346463 -28848969 + RMER5 LTR ERV1 329 486 -48 5 1869 351 332 95 14 chr1 168346810 168347061 -28848371 - MLT1H-int LTR MaLR -261 1148 860 5 1869 648 0 0 0 chr1 168347096 168347168 -28848264 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 5 1869 607 202 24 0 chr1 168347381 168347505 -28847927 - B3 SINE B2 -89 127 1 5 1869 306 0 0 0 chr1 168347859 168347893 -28847539 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1869 691 213 76 5 chr1 168347996 168348180 -28847252 - ORR1E LTR MaLR -162 197 1 5 1869 1017 265 57 27 chr1 168348197 168348635 -28846797 - L1M2 LINE L1 -2699 4146 3696 5 1869 38932 42 0 3 chr1 168348652 168355099 -28840333 - L1Md_T LINE L1 0 6585 59 5 1869 1317 301 65 7 chr1 168355100 168355695 -28839737 - L1M2 LINE L1 -3138 3707 3078 5 1869 330 259 28 33 chr1 168355712 168355906 -28839526 - L1M2 LINE L1 -3932 2913 2717 5 1869 228 67 0 0 chr1 168355929 168355959 -28839473 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1869 919 199 5 31 chr1 168355959 168356151 -28839281 - B3 SINE B2 -29 187 1 5 1869 1269 111 22 0 chr1 168356189 168356370 -28839062 - B2_Mm2 SINE B2 -10 185 1 5 1869 887 273 66 15 chr1 168356673 168356699 -28838733 - B4 SINE B4 0 292 269 5 1869 353 58 19 0 chr1 168356699 168356751 -28838681 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1869 887 273 66 15 chr1 168356751 168356995 -28838437 - B4 SINE B4 -24 268 9 5 1869 236 253 128 32 chr1 168357199 168357387 -28838045 - L1M2 LINE L1 -4118 1730 1525 5 1869 384 95 176 0 chr1 168357415 168357489 -28837943 - B3 SINE B2 0 216 130 5 1869 2854 197 110 96 chr1 168357691 168357966 -28837466 - RMER12 LTR ERVK -133 1189 834 5 1869 306 0 0 0 chr1 168357966 168358000 -28837432 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1869 2854 197 144 26 chr1 168358000 168358737 -28836695 - RMER12 LTR ERVK -489 833 3 5 1869 616 36 12 0 chr1 168358739 168358822 -28836610 + B1_Mus2 SINE Alu 64 147 0 5 1869 297 20 39 20 chr1 168358864 168358915 -28836517 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 5 1869 228 261 174 36 chr1 168358923 168359090 -28836342 - L1M2 LINE L1 -4368 1480 1291 5 1869 521 56 65 0 chr1 168359117 168359224 -28836208 + (TG)n Simple_repeat Simple_repeat 2 115 0 5 1869 374 230 71 0 chr1 168359440 168359553 -28835879 + RSINE1 SINE B4 5 125 -40 5 1869 603 60 0 0 chr1 168359553 168359637 -28835795 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 1869 36 53 0 0 chr1 168359658 168359715 -28835717 + AT_rich Low_complexity Low_complexity 1 57 0 5 1869 246 315 27 27 chr1 168360548 168360659 -28834773 - MIR SINE MIR -119 143 33 5 1869 5902 156 29 42 chr1 168360947 168362626 -28832806 - Lx2 LINE L1 0 6997 5345 5 1869 483 310 79 11 chr1 168363239 168363428 -28832004 + Lx8 LINE L1 7032 7233 -240 5 1869 34 55 0 0 chr1 168363527 168363582 -28831850 + AT_rich Low_complexity Low_complexity 1 55 0 5 1869 373 222 0 16 chr1 168363582 168363765 -28831667 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1869 566 319 0 30 chr1 168363767 168363935 -28831497 - RSINE1 SINE B4 0 165 3 5 1869 322 89 54 0 chr1 168364513 168364569 -28830863 - RMER1B Other Other -9 1057 999 5 1869 1902 128 25 31 chr1 168364569 168364924 -28830508 + RLTR15 LTR ERVK 1 353 -6 5 1869 2456 162 70 18 chr1 168364963 168365420 -28830012 - RMER1B Other Other -135 931 451 5 1869 29 28 0 0 chr1 168365449 168365485 -28829947 + AT_rich Low_complexity Low_complexity 1 36 0 5 1869 423 0 0 0 chr1 168365796 168365843 -28829589 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 1869 1053 106 0 0 chr1 168365894 168366074 -28829358 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1869 681 234 149 0 chr1 168366543 168366731 -28828701 - B3 SINE B2 0 216 1 5 1869 299 369 7 28 chr1 168367112 168367257 -28828175 - ERVL-E-int LTR ERVL -1445 4222 4081 5 1869 440 18 18 0 chr1 168367333 168367390 -28828042 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1869 281 298 188 15 chr1 168367491 168367624 -28827808 - ERVL-E-int LTR ERVL -1813 3901 3746 5 1869 224 100 0 24 chr1 168368075 168368116 -28827316 + (TTA)n Simple_repeat Simple_repeat 2 41 0 5 1869 742 226 46 35 chr1 168368333 168368530 -28826902 + Lx9 LINE L1 7267 7465 -179 5 1869 246 62 0 0 chr1 168368533 168368565 -28826867 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1869 470 188 31 8 chr1 168368567 168368696 -28826736 + Lx9 LINE L1 7513 7644 0 5 1869 26 0 0 0 chr1 168368797 168368823 -28826609 + AT_rich Low_complexity Low_complexity 1 26 0 5 1869 270 208 113 47 chr1 168369258 168369364 -28826068 - PB1D10 SINE Alu 0 117 5 5 1869 357 281 57 50 chr1 168370096 168370268 -28825164 - L1MA4 LINE L1 -371 5929 5690 5 1869 266 274 218 23 chr1 168370318 168370436 -28824996 + MIRc SINE MIR 28 163 -105 5 1869 387 0 0 0 chr1 168370948 168370991 -28824441 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1869 369 237 43 26 chr1 168371019 168371136 -28824296 + MTD LTR MaLR 1 119 -300 5 1869 723 220 125 0 chr1 168371131 168371299 -28824133 - B3 SINE B2 -17 199 11 5 1869 1164 223 20 69 chr1 168371326 168371629 -28823803 + MTD LTR MaLR 118 405 -14 5 1869 404 297 10 0 chr1 168371701 168371802 -28823630 - B1F1 SINE Alu -13 136 35 5 1869 2515 95 67 11 chr1 168372376 168372750 -28822682 + Lx LINE L1 6260 6654 0 5 1869 303 140 0 0 chr1 168373094 168373144 -28822288 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1869 34 0 0 0 chr1 168373148 168373182 -28822250 + AT_rich Low_complexity Low_complexity 1 34 0 5 1869 573 312 33 73 chr1 168373242 168373543 -28821889 + MLT1A0 LTR MaLR 59 347 -18 5 1869 270 261 46 92 chr1 168373749 168373880 -28821552 + MIRb SINE MIR 109 233 -35 5 1869 346 305 62 22 chr1 168373966 168374144 -28821288 - L1MEg LINE L1 -4146 1938 1754 5 1869 541 301 112 4 chr1 168374216 168374476 -28820956 - B4A SINE B4 -4 288 1 5 1869 1267 249 47 30 chr1 168374633 168374997 -28820435 - ORR1D2 LTR MaLR 0 370 1 6 1869 689 247 57 34 chr1 168374998 168375296 -28820136 + Charlie1a DNA MER1_type 1087 1391 -64 6 1869 580 200 158 64 chr1 168376144 168376315 -28819117 - B3A SINE B2 -9 189 3 6 1869 372 22 0 0 chr1 168376339 168376384 -28819048 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1869 557 246 23 0 chr1 168376388 168376518 -28818914 - RSINE1 SINE B4 -31 134 2 6 1869 251 285 50 78 chr1 168376565 168376744 -28818688 + CR1_Mam LINE CR1 1241 1414 -790 6 1869 210 348 0 0 chr1 168376910 168376979 -28818453 - MIRc SINE MIR -107 161 93 6 1869 701 250 102 126 chr1 168377634 168377959 -28817473 - MTE2a LTR MaLR -57 322 6 6 1869 410 215 14 0 chr1 168379594 168379688 -28815744 - B1_Mur3 SINE Alu -20 100 4 6 1869 472 250 70 8 chr1 168379691 168379820 -28815612 - B4 SINE B4 -61 231 95 6 1869 222 277 0 15 chr1 168379823 168379889 -28815543 + B1_Mur3 SINE Alu 82 146 -3 6 1869 5526 129 24 13 chr1 168381172 168382066 -28813366 + Lx2 LINE L1 6095 6997 0 6 1869 339 241 145 8 chr1 168382216 168382333 -28813099 - L1MC1 LINE L1 -1 6332 6200 6 1869 288 0 0 0 chr1 168382640 168382672 -28812760 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1869 4883 139 9 4 chr1 168382736 168383493 -28811939 + L1_Mur2 LINE L1 5105 5865 -12 6 1869 2758 223 22 0 chr1 168383496 168384047 -28811385 + Lx5 LINE L1 6480 7042 -8 6 1869 25 0 0 28 chr1 168384047 168384059 -28811373 + AT_rich Low_complexity Low_complexity 1 12 0 6 1869 2167 82 65 28 chr1 168384059 168384383 -28811049 + L1Md_F2 LINE L1 6242 6577 -5 6 1869 25 0 0 28 chr1 168384383 168384406 -28811026 + AT_rich Low_complexity Low_complexity 1 23 0 6 1869 440 18 18 0 chr1 168384562 168384619 -28810813 + (CTATT)n Simple_repeat Simple_repeat 4 61 0 6 1869 231 286 0 14 chr1 168384683 168384754 -28810678 + Lx8 LINE L1 6890 6959 -514 6 1869 2989 59 70 0 chr1 168384754 168385128 -28810304 - MTB LTR MaLR 0 400 1 6 1869 7323 92 9 68 chr1 168385128 168386296 -28809136 - MTB-int LTR MaLR 0 1098 1 6 1869 1705 37 5 0 chr1 168386296 168386514 -28808918 - MTB LTR MaLR 0 400 182 6 1869 7074 45 0 6 chr1 168386514 168387366 -28808066 - L1Md_F2 LINE L1 -3 6579 5733 6 1869 1106 43 0 0 chr1 168387366 168387507 -28807925 + MT-int LTR MaLR 374 514 -584 6 1869 705 263 216 22 chr1 168387563 168387925 -28807507 + Lx8 LINE L1 7041 7472 -1 6 1869 1710 218 98 60 chr1 168389302 168389608 -28805824 + Lx7 LINE L1 7134 7419 -277 6 1869 351 0 0 0 chr1 168389608 168389647 -28805785 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1869 1710 218 98 60 chr1 168389647 168389872 -28805560 + Lx7 LINE L1 7420 7684 -12 6 1869 1381 80 0 26 chr1 168389872 168390065 -28805367 - L1Md_F2 LINE L1 0 6582 6395 6 1869 2175 52 0 11 chr1 168390065 168390336 -28805096 + L1Md_F2 LINE L1 6016 6283 -299 6 1869 288 170 0 0 chr1 168390348 168390401 -28805031 + (CAA)n Simple_repeat Simple_repeat 2 54 0 6 1869 1143 197 29 5 chr1 168390407 168390611 -28804821 + B3 SINE B2 1 209 -7 6 1869 495 0 0 0 chr1 168390877 168390932 -28804500 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1869 306 0 0 0 chr1 168390932 168390965 -28804467 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1869 457 302 34 0 chr1 168392076 168392195 -28803237 - ID_B1 SINE B4 -17 207 85 6 1869 21 0 0 0 chr1 168392221 168392242 -28803190 + AT_rich Low_complexity Low_complexity 1 21 0 6 1869 198 374 61 0 chr1 168392647 168392746 -28802686 + L2a LINE L2 3054 3158 -268 6 1869 348 396 25 49 chr1 168392874 168393036 -28802396 + LTR16E1 LTR ERVL 157 314 -224 6 1869 24 0 0 0 chr1 168393132 168393156 -28802276 + AT_rich Low_complexity Low_complexity 1 24 0 6 1869 252 158 0 0 chr1 168393167 168393224 -28802208 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1869 563 182 6 18 chr1 168393250 168393418 -28802014 + (TG)n Simple_repeat Simple_repeat 1 166 0 6 1869 332 181 0 12 chr1 168393436 168393520 -28801912 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1869 802 284 45 38 chr1 168393534 168393823 -28801609 - B4A SINE B4 0 292 2 6 1869 3920 177 86 98 chr1 168393992 168394121 -28801311 - RMER1B Other Other -11 1055 922 6 1869 387 0 0 0 chr1 168394121 168394164 -28801268 + (CAA)n Simple_repeat Simple_repeat 3 45 0 6 1869 3920 177 86 98 chr1 168394164 168394669 -28800763 - RMER1B Other Other -145 921 424 6 1869 318 80 0 0 chr1 168394669 168394719 -28800713 + (TGG)n Simple_repeat Simple_repeat 1 50 0 6 1869 3920 177 86 98 chr1 168394719 168395150 -28800282 - RMER1B Other Other -643 423 2 6 1869 1158 262 22 40 chr1 168395597 168395875 -28799557 + B4A SINE B4 2 274 -18 6 1869 660 119 92 0 chr1 168397320 168397429 -28798003 - Lx5 LINE L1 -3 7047 6929 6 1869 398 275 82 62 chr1 168398033 168398227 -28797205 - B3A SINE B2 0 198 1 6 1869 37381 35 11 11 chr1 168399305 168400955 -28794477 - L1Md_T LINE L1 0 6582 4914 6 1869 225 183 46 77 chr1 168400955 168401020 -28794412 + RMER20A LTR ERVK 186 248 -268 6 1869 37381 35 11 11 chr1 168401020 168404685 -28790747 - L1Md_T LINE L1 0 4913 1203 6 1869 8637 14 1 0 chr1 168404651 168405633 -28789799 - L1Md_Gf LINE L1 -5380 1142 160 6 1869 286 167 0 0 chr1 168405899 168405959 -28789473 - MT2A LTR ERVL 0 601 482 6 1869 2507 132 36 18 chr1 168406106 168406493 -28788939 - ORR1B1 LTR MaLR 0 394 1 6 1869 196 275 29 14 chr1 168406628 168406698 -28788734 - L3 LINE CR1 -2337 2152 2082 6 1869 26 0 0 0 chr1 168406979 168407005 -28788427 + AT_rich Low_complexity Low_complexity 1 26 0 6 1869 437 314 113 62 chr1 168407229 168407722 -28787710 + MLT2B3 LTR ERVL 12 515 0 6 1869 3127 61 5 0 chr1 168407896 168408275 -28787157 + L1Md_F2 LINE L1 6202 6582 0 6 1869 21 71 0 0 chr1 168408361 168408403 -28787029 + AT_rich Low_complexity Low_complexity 1 42 0 6 1869 182 272 185 0 chr1 168408480 168408561 -28786871 - MIRb SINE MIR -148 120 25 6 1869 269 308 46 0 chr1 168411552 168411617 -28783815 + L4 LINE RTE 1063 1130 -899 6 1869 229 277 36 12 chr1 168412117 168412201 -28783231 - L1MC4 LINE L1 -1 8041 7956 6 1869 3514 121 92 20 chr1 168412640 168413229 -28782203 + Lx4A LINE L1 6397 7027 -31 6 1869 1251 126 16 6 chr1 168415099 168415282 -28780150 + B2_Mm2 SINE B2 1 185 -10 6 1869 291 190 0 0 chr1 168415503 168415561 -28779871 + (CAA)n Simple_repeat Simple_repeat 2 59 0 6 1869 386 296 0 41 chr1 168415568 168415737 -28779695 + HAL1-2a_MD LINE L1 2347 2508 -516 6 1869 573 244 8 0 chr1 168416147 168416278 -28779154 - L1MA6 LINE L1 -5 6295 6164 6 1869 289 304 28 47 chr1 168416310 168416416 -28779016 + MER54B LTR ERVL 478 581 -212 6 1869 535 339 71 22 chr1 168416416 168416569 -28778863 + B3A SINE B2 1 164 -34 6 1869 225 0 0 0 chr1 168416569 168416594 -28778838 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1869 535 339 71 22 chr1 168416594 168416624 -28778808 + B3A SINE B2 165 193 -5 6 1869 615 333 58 5 chr1 168416639 168416847 -28778585 + MER54B LTR ERVL 570 788 -5 6 1869 425 263 0 0 chr1 168418141 168418236 -28777196 - B3 SINE B2 -5 211 117 6 1869 489 17 0 0 chr1 168418295 168418353 -28777079 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1869 711 204 0 49 chr1 168418372 168418516 -28776916 - B3 SINE B2 -77 139 3 6 1869 283 271 138 110 chr1 168418542 168418596 -28776836 - B1F SINE Alu 0 149 102 6 1869 4379 52 0 14 chr1 168418596 168419106 -28776326 + RLTR1C LTR ERV1 1 503 0 6 1869 283 271 138 110 chr1 168419106 168419196 -28776236 - B1F SINE Alu -48 101 1 6 1869 387 41 0 0 chr1 168419893 168419942 -28775490 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1869 654 268 49 0 chr1 168419945 168420087 -28775345 - B3A SINE B2 -41 157 9 6 1869 3356 77 2 12 chr1 168421130 168421540 -28773892 + MTB_Mm LTR MaLR 1 406 -1 6 1869 562 335 6 0 chr1 168421951 168422115 -28773317 - B3A SINE B2 -26 172 8 6 1869 317 267 65 29 chr1 168422133 168422272 -28773160 - MER33 DNA MER1_type -129 195 52 6 1869 1359 189 64 32 chr1 168422306 168422401 -28773031 + Lx7 LINE L1 7376 7470 -226 6 1869 868 111 0 14 chr1 168422401 168422547 -28772885 + (TTC)n Simple_repeat Simple_repeat 3 146 0 6 1869 1359 189 64 32 chr1 168422547 168422762 -28772670 + Lx7 LINE L1 7471 7695 -1 6 1869 1284 194 19 5 chr1 168422781 168422993 -28772439 - B3 SINE B2 -1 215 1 6 1869 1224 90 0 0 chr1 168423466 168424292 -28771140 + (CA)n Simple_repeat Simple_repeat 1 826 0 6 1869 24 0 0 0 chr1 168424943 168424967 -28770465 + AT_rich Low_complexity Low_complexity 1 24 0 6 1869 5448 70 34 0 chr1 168424967 168425636 -28769796 - L1Md_F2 LINE L1 -11 6571 5880 6 1869 488 317 80 80 chr1 168426501 168426569 -28768863 + MTEa LTR MaLR 61 125 -254 6 1869 2414 202 41 10 chr1 168426569 168427079 -28768353 - RLTR11A2 LTR ERVK 0 527 2 6 1869 488 317 80 80 chr1 168427079 168427322 -28768110 + MTEa LTR MaLR 126 372 -7 6 1869 21 0 0 0 chr1 168427409 168427430 -28768002 + AT_rich Low_complexity Low_complexity 1 21 0 6 1870 5010 68 3 5 chr1 168427816 168428452 -28766980 + L1_Mm LINE L1 4949 5586 -297 6 1870 8104 70 0 11 chr1 168428452 168429447 -28765985 + L1Md_F2 LINE L1 5587 6570 -12 6 1870 5010 68 3 5 chr1 168429447 168429461 -28765971 + L1_Mm LINE L1 5587 5598 -285 6 1870 258 81 0 0 chr1 168429501 168429538 -28765894 + (TAA)n Simple_repeat Simple_repeat 3 39 0 6 1870 282 95 0 0 chr1 168429564 168429606 -28765826 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1870 451 308 20 65 chr1 168430016 168430169 -28765263 + RSINE1 SINE B4 3 148 -17 6 1870 259 279 63 0 chr1 168430591 168430670 -28764762 - L1MA6 LINE L1 -359 5941 5858 6 1870 1402 108 0 5 chr1 168431987 168432182 -28763250 - B2_Mm2 SINE B2 0 195 2 6 1870 2025 47 4 0 chr1 168432442 168432677 -28762755 - L1Md_F3 LINE L1 -14 6570 6335 6 1870 192 125 0 0 chr1 168433275 168433307 -28762125 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 6 1870 264 30 0 0 chr1 168433617 168433650 -28761782 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 6 1870 1092 316 97 18 chr1 168434292 168434853 -28760579 - MLT2B5 LTR ERVL -158 559 80 6 1870 270 275 58 0 chr1 168435355 168435424 -28760008 - PB1D10 SINE Alu -42 75 3 6 1870 183 156 0 0 chr1 168435594 168435626 -28759806 + GA-rich Low_complexity Low_complexity 1 32 0 6 1870 411 21 0 0 chr1 168436165 168436213 -28759219 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1870 522 0 0 0 chr1 168436861 168436919 -28758513 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1870 456 214 19 32 chr1 168436919 168437089 -28758343 + RLTR31A_Mm LTR ERVK 103 198 -386 6 1870 1419 78 21 10 chr1 168438986 168439179 -28756253 + B2_Mm2 SINE B2 1 195 0 6 1870 192 48 23 45 chr1 168439634 168439678 -28755754 + (TTG)n Simple_repeat Simple_repeat 2 44 0 7 1870 699 60 43 0 chr1 168439678 168439794 -28755638 - L1_Mus3 LINE L1 -7 6631 6511 7 1870 375 253 0 22 chr1 168439924 168440013 -28755419 - B3 SINE B2 -61 155 69 7 1870 994 288 81 16 chr1 168440074 168440445 -28754987 - Lx8 LINE L1 -132 7341 6947 7 1870 12075 76 3 8 chr1 168440549 168442811 -28752621 - L1Md_F2 LINE L1 0 6582 4329 7 1870 15645 82 27 17 chr1 168442808 168445840 -28749592 - L1Md_F2 LINE L1 -2179 3704 639 7 1870 569 174 10 0 chr1 168445836 168445934 -28749498 - L1Md_F2 LINE L1 -6323 315 217 7 1870 281 296 14 0 chr1 168446352 168446423 -28749009 + GA-rich Low_complexity Low_complexity 2 73 0 7 1870 518 271 119 50 chr1 168446423 168446641 -28748791 - MLT2B3 LTR ERVL -321 233 1 7 1870 928 157 6 25 chr1 168446717 168446874 -28748558 - URR1B DNA MER1_type -71 154 1 7 1870 182 37 37 0 chr1 168446983 168447010 -28748422 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 7 1870 2366 126 142 19 chr1 168447066 168447495 -28747937 + RLTR45 LTR ERVK 1 482 0 7 1870 4590 78 34 18 chr1 168447495 168448176 -28747256 + RLTR45-int LTR ERVK 1 692 -6552 7 1870 1018 40 0 0 chr1 168448534 168448659 -28746773 + RLTR45-int LTR ERVK 694 818 -6426 7 1870 277 260 122 30 chr1 168448868 168448999 -28746433 + RNERVK23-int LTR ERVK 6195 6337 -1880 7 1870 2390 44 0 0 chr1 168449394 168449690 -28745742 + RLTR45-int LTR ERVK 1329 1624 -5620 7 1870 7002 113 3 3 chr1 168450046 168451191 -28744241 + RLTR45-int LTR ERVK 6331 7750 -467 7 1870 2240 129 148 19 chr1 168451191 168451618 -28743814 + RLTR45 LTR ERVK 1 482 0 7 1870 15067 52 3 2 chr1 168451634 168454375 -28741057 - L1Md_F3 LINE L1 -1 6583 3841 7 1870 212 59 0 29 chr1 168454466 168454501 -28740931 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1870 1144 77 6 12 chr1 168455960 168456130 -28739302 + (TTCTCC)n Simple_repeat Simple_repeat 3 171 0 7 1870 529 205 17 17 chr1 168456130 168456304 -28739128 + CT-rich Low_complexity Low_complexity 6 179 0 7 1870 269 222 15 2 chr1 168456304 168456379 -28739053 - Lx9 LINE L1 -490 7154 7090 7 1870 400 339 17 56 chr1 168456379 168456610 -28738822 + L1M2 LINE L1 2867 3088 -3055 7 1870 3009 132 18 56 chr1 168457312 168458495 -28736937 - L1Md_F LINE L1 -4490 1393 276 7 1870 1744 32 300 4 chr1 168458516 168458789 -28736643 - L1Md_F3 LINE L1 -1 6583 6230 7 1870 1083 157 16 0 chr1 168460192 168460383 -28735049 - B2_Mm2 SINE B2 0 195 2 7 1870 335 78 20 0 chr1 168461252 168461303 -28734129 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 7 1870 525 68 0 0 chr1 168461605 168461679 -28733753 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 7 1870 1125 301 107 7 chr1 168462433 168462865 -28732567 - MLT2B5 LTR ERVL -158 559 85 7 1870 288 261 58 0 chr1 168463366 168463435 -28731997 - PB1D10 SINE Alu -42 75 3 7 1870 4103 71 0 0 chr1 168464309 168464872 -28730560 - L1_Mm LINE L1 -524 5359 4797 7 1870 4237 64 3 1 chr1 168464865 168465541 -28729891 - L1Md_F3 LINE L1 -620 5964 5288 7 1870 34413 56 2 5 chr1 168465538 168471035 -28724397 - L1Md_F3 LINE L1 -16 6568 1108 7 1870 38189 18 2 6 chr1 168471038 168477188 -28718244 - L1Md_A LINE L1 -2 6580 462 7 1870 4813 191 35 6 chr1 168477190 168478264 -28717168 - L1Md_F3 LINE L1 -5605 1119 31 7 1870 1296 70 5 0 chr1 168478263 168478448 -28716984 - L1Md_F LINE L1 -5491 1028 843 7 1870 35934 43 0 1 chr1 168478446 168483886 -28711546 - L1Md_T LINE L1 0 6582 1145 7 1870 1060 150 37 16 chr1 168484457 168484647 -28710785 - B2_Mm2 SINE B2 0 195 2 7 1870 806 183 0 6 chr1 168485516 168485681 -28709751 + T-rich Low_complexity Low_complexity 2 165 0 7 1870 599 26 13 0 chr1 168485983 168486060 -28709372 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 7 1870 1141 295 111 9 chr1 168486822 168487253 -28708179 - MLT2B5 LTR ERVL -158 559 85 7 1870 224 354 12 0 chr1 168487737 168487754 -28707678 - B4A SINE B4 -121 171 89 7 1870 238 246 108 0 chr1 168487754 168487819 -28707613 - PB1D10 SINE Alu -42 75 4 7 1870 214 171 0 0 chr1 168487981 168488016 -28707416 + GA-rich Low_complexity Low_complexity 3 37 0 7 1870 219 36 0 0 chr1 168488541 168488569 -28706863 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1870 16855 81 7 2 chr1 168488678 168488800 -28706632 - L1_Mm LINE L1 -516 5367 5244 7 1870 552 68 0 0 chr1 168488800 168488873 -28706559 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1870 16855 81 7 2 chr1 168488873 168491216 -28704216 - L1_Mm LINE L1 -640 5243 2890 7 1870 18082 71 2 3 chr1 168491211 168493760 -28701672 + L1Md_F3 LINE L1 3040 5587 -296 7 1870 7875 51 4 4 chr1 168493763 168494756 -28700676 + L1Md_F3 LINE L1 5591 6583 -1 7 1870 5298 55 21 0 chr1 168494891 168495563 -28699869 + L1Md_F2 LINE L1 5897 6582 0 7 1870 25 31 0 0 chr1 168495563 168495595 -28699837 + AT_rich Low_complexity Low_complexity 1 32 0 7 1870 3453 82 2 2 chr1 168495595 168496098 -28699334 + L1_Mm LINE L1 3324 3826 -2057 7 1870 2149 57 7 14 chr1 168496098 168496381 -28699051 + L1Md_F3 LINE L1 6303 6583 -1 7 1870 855 98 0 0 chr1 168496388 168496531 -28698901 + L1Md_A LINE L1 1143 1285 -5439 7 1870 12825 58 6 11 chr1 168496526 168496772 -28698660 - L1Md_A LINE L1 -2855 3028 2776 7 1870 4483 10 0 0 chr1 168496772 168497265 -28698167 - MT2_Mm LTR ERVL 0 493 1 7 1870 12825 61 6 10 chr1 168497265 168498927 -28696505 - L1Md_A LINE L1 -3108 2775 1129 7 1870 2972 207 42 4 chr1 168498918 168499688 -28695744 - L1Md_A LINE L1 -5904 820 31 7 1870 2087 96 0 0 chr1 168499687 168499999 -28695433 - L1Md_F LINE L1 -5491 1028 717 7 1870 2181 142 3 0 chr1 168500000 168500332 -28695100 - L1Md_F LINE L1 -5804 715 383 1 1870 1615 156 11 8 chr1 168500332 168500597 -28694835 - L1VL1 LINE L1 -6156 266 1 2 1870 498 315 30 10 chr1 168500605 168500804 -28694628 + L1MA4A LINE L1 5694 5896 -407 3 1870 459 0 0 0 chr1 168500838 168500889 -28694543 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1870 27 29 0 0 chr1 168501287 168501321 -28694111 + AT_rich Low_complexity Low_complexity 1 34 0 5 1870 216 0 0 0 chr1 168501566 168501590 -28693842 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 6 1870 1144 81 17 6 chr1 168503043 168503216 -28692216 + (TTCTCC)n Simple_repeat Simple_repeat 6 180 0 7 1870 413 174 18 19 chr1 168503264 168503367 -28692065 - Lx9 LINE L1 -490 7154 7089 8 1870 309 329 4 44 chr1 168503364 168503590 -28691842 + L1M2 LINE L1 2877 3093 -3050 9 1870 1610 137 93 7 chr1 168505641 168505942 -28689490 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1870 4781 120 18 3 chr1 168505947 168506665 -28688767 + IAPEY3-int LTR ERVK 3 731 -6949 1 1870 3539 68 7 0 chr1 168506653 168507091 -28688341 + IAPEY3-int LTR ERVK 2362 2802 -4878 1 1870 30381 99 11 3 chr1 168507083 168511263 -28684169 + IAPEY3-int LTR ERVK 3018 7230 -450 1 1870 2644 41 35 0 chr1 168511263 168511577 -28683855 + IAPLTR2b LTR ERVK 1 325 -2 1 1870 2646 120 17 13 chr1 168511579 168512031 -28683401 + IAPEz-int LTR ERVK 1 577 -5904 1 1870 1948 86 43 0 chr1 168512017 168512274 -28683158 + IAPLTR4_I LTR ERVK 915 1182 -288 1 1870 403 53 0 0 chr1 168512274 168512331 -28683101 + B1_Mus1 SINE Alu 1 57 -91 1 1870 1926 60 4 0 chr1 168512341 168512575 -28682857 + IAPEY3-int LTR ERVK 2263 2497 -5183 1 1870 14026 77 9 9 chr1 168512574 168514397 -28681035 + IAPEz-int LTR ERVK 4656 6479 -2 1 1870 2617 48 35 0 chr1 168514399 168514713 -28680719 + IAPLTR2b LTR ERVK 1 325 -2 1 1870 3121 120 11 20 chr1 168514715 168515175 -28680257 + IAPEY3-int LTR ERVK 7225 7680 0 1 1870 1457 162 101 3 chr1 168515176 168515473 -28679959 + IAPEY3_LTR LTR ERVK 2 327 -5 1 1870 513 44 0 0 chr1 168515662 168515730 -28679702 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1870 1522 257 33 21 chr1 168515733 168516122 -28679310 + Lx6 LINE L1 6842 7235 -225 1 1870 787 246 63 38 chr1 168516129 168516416 -28679016 + MYSERV16_I-int LTR ERVK 475 768 -1558 1 1870 293 233 184 55 chr1 168516506 168516615 -28678817 + RMER4A LTR ERVK 312 434 -32 1 1870 4160 200 85 46 chr1 168516752 168517863 -28677569 + MYSERV-int LTR ERVK 5393 6546 -4 2 1870 2667 139 18 5 chr1 168517865 168518312 -28677120 + RLTR11B LTR ERVK 1 453 0 2 1870 1006 242 0 5 chr1 168518312 168518536 -28676896 + Lx6 LINE L1 7237 7459 -1 1 1870 33293 77 2 1 chr1 168518642 168523450 -28671982 - L1Md_Gf LINE L1 -228 5658 750 2 1870 1345 159 106 10 chr1 168523450 168523742 -28671690 + IAPLTR4_I LTR ERVK 1 320 -12 2 1870 5866 74 20 11 chr1 168523742 168524586 -28670846 + IAPLTR4_I LTR ERVK 11 952 -6629 2 1870 1778 201 159 54 chr1 168524698 168525214 -28670218 + RMER16-int LTR ERVK 251 820 -4586 2 1870 311 319 88 0 chr1 168525218 168525331 -28670101 + RMER16-int LTR ERVK 938 1060 -5077 2 1870 611 253 374 25 chr1 168525344 168525566 -28669866 + RLTR45-int LTR ERVK 2454 2753 -4653 2 1870 1579 101 97 21 chr1 168525601 168525939 -28669493 + RLTR45-int LTR ERVK 4296 4596 -2648 2 1870 1537 139 138 4 chr1 168525910 168526170 -28669262 + RLTR45-int LTR ERVK 3973 4267 -3139 2 1870 467 189 23 34 chr1 168526168 168526303 -28669129 + MMETn-int LTR ERVK 2357 2464 -2380 2 1870 875 76 68 8 chr1 168526315 168526448 -28668984 + IAPEY3-int LTR ERVK 4530 4670 -2911 2 1870 3407 77 2 37 chr1 168526689 168527148 -28668284 + IAPEY3-int LTR ERVK 5203 5645 -1936 2 1870 3421 101 0 2 chr1 168527136 168527591 -28667841 + IAPEY3-int LTR ERVK 5761 6214 -1367 2 1870 4279 88 31 0 chr1 168527581 168528159 -28667273 + IAPEY3-int LTR ERVK 6743 7338 -342 2 1870 1445 198 55 15 chr1 168528176 168528519 -28666913 + IAPEz-int LTR ERVK 6125 6481 0 2 1870 1422 164 92 0 chr1 168528519 168528812 -28666620 + IAPEY3_LTR LTR ERVK 1 320 -12 2 1870 4506 91 51 9 chr1 168528820 168529462 -28665970 - L1Md_F LINE L1 -5749 770 102 2 1870 4325 197 44 42 chr1 168529501 168530227 -28665205 - Lx7 LINE L1 -4 7692 6958 2 1870 183 129 0 0 chr1 168530227 168530258 -28665174 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1870 4325 197 44 42 chr1 168530258 168530486 -28664946 - Lx7 LINE L1 -739 6957 6736 2 1870 4784 74 5 3 chr1 168530487 168531127 -28664305 + L1Md_A LINE L1 450 1090 -5634 3 1870 39268 7 0 1 chr1 168531126 168536879 -28658553 + L1Md_A LINE L1 1 5586 -297 3 1870 9109 7 0 0 chr1 168536879 168537875 -28657557 + L1Md_A LINE L1 5587 6582 0 3 1870 207 0 0 0 chr1 168537895 168537918 -28657514 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1870 37572 25 1 5 chr1 168537918 168542467 -28652965 + L1Md_A LINE L1 1074 5586 -297 3 1870 8383 37 8 0 chr1 168542467 168543449 -28651983 + L1Md_A LINE L1 5587 6576 -6 3 1870 3199 213 27 9 chr1 168543450 168544084 -28651348 - Lx7 LINE L1 -952 6744 6100 2 1870 210 71 0 0 chr1 168544410 168544438 -28650994 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 3 1870 17996 24 1 0 chr1 168544442 168547208 -28648224 - L1Md_A LINE L1 -3 6579 3811 3 1870 1169 68 0 0 chr1 168547230 168547377 -28648055 - B1_Mm SINE Alu 0 147 1 3 1870 1156 239 65 4 chr1 168547461 168547721 -28647711 - Lx2B LINE L1 -7 6993 6718 3 1870 5895 158 9 17 chr1 168547699 168548718 -28646714 + Lx2B LINE L1 5705 6715 -285 3 1870 198 0 0 0 chr1 168548767 168548789 -28646643 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1870 251 317 122 24 chr1 168549046 168549259 -28646173 - L3 LINE CR1 -128 4361 4128 4 1870 1007 82 14 0 chr1 168549363 168549509 -28645923 + (GGAGAA)n Simple_repeat Simple_repeat 6 153 0 4 1870 570 124 0 0 chr1 168549509 168549598 -28645834 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 4 1870 844 170 25 6 chr1 168550097 168550257 -28645175 + L1_Mus3 LINE L1 5015 5177 -706 4 1870 4121 17 51 0 chr1 168550257 168550726 -28644706 + MT2_Mm LTR ERVL 1 493 0 4 1870 47866 19 9 0 chr1 168550726 168556052 -28639380 + MERVL-int LTR ERVL 1 5371 -114 4 1870 339 125 26 53 chr1 168556052 168556128 -28639304 + ORR1A3-int LTR MaLR 567 640 -1323 4 1870 321 0 0 0 chr1 168556128 168556166 -28639266 + MERVL-int LTR ERVL 5448 5485 0 4 1870 4217 17 38 0 chr1 168556166 168556641 -28638791 + MT2_Mm LTR ERVL 1 493 0 4 1870 6196 85 101 0 chr1 168556644 168557981 -28637451 + L1_Mus3 LINE L1 5176 6637 -1 4 1870 268 348 104 26 chr1 168558275 168558505 -28636927 + Charlie7 DNA MER1_type 245 492 -2120 4 1871 231 226 40 173 chr1 168558765 168558915 -28636517 - RMER15 LTR ERVL -445 130 1 4 1871 21 0 0 0 chr1 168559103 168559124 -28636308 + AT_rich Low_complexity Low_complexity 1 21 0 4 1871 441 54 0 0 chr1 168559853 168559909 -28635523 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 4 1871 639 226 0 30 chr1 168561143 168561275 -28634157 + B1F SINE Alu 19 149 0 5 1871 24 0 0 0 chr1 168561346 168561370 -28634062 + AT_rich Low_complexity Low_complexity 1 24 0 5 1871 1255 324 52 15 chr1 168561511 168562047 -28633385 + Lx8 LINE L1 6507 7062 -411 5 1871 330 307 123 22 chr1 168562309 168562585 -28632847 - L1MB5 LINE L1 -322 5852 5549 5 1871 338 332 70 70 chr1 168564174 168564430 -28631002 + L1ME3A LINE L1 5902 6157 -16 5 1871 433 272 70 9 chr1 168565570 168565685 -28629747 - B1_Mur2 SINE Alu -10 139 18 5 1871 4950 85 1 14 chr1 168565733 168566423 -28629009 + L1_Mus1 LINE L1 5884 6564 -3 5 1871 25 0 0 0 chr1 168566423 168566448 -28628984 + AT_rich Low_complexity Low_complexity 1 25 0 5 1871 441 0 0 0 chr1 168566512 168566561 -28628871 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1871 323 173 19 0 chr1 168566577 168566629 -28628803 - RSINE1 SINE B4 -36 129 77 5 1871 438 20 0 0 chr1 168567016 168567067 -28628365 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 6 1871 615 279 0 7 chr1 168567067 168567204 -28628228 - RSINE1 SINE B4 -19 146 11 6 1871 356 305 6 13 chr1 168567309 168567465 -28627967 + GA-rich Low_complexity Low_complexity 1 155 0 6 1871 995 163 145 16 chr1 168567932 168568125 -28627307 + URR1A DNA MER1_type 1 218 -8 6 1871 229 298 0 0 chr1 168568702 168568759 -28626673 + Lx4B LINE L1 6883 6939 -119 6 1871 489 58 0 0 chr1 168568759 168568828 -28626604 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1871 279 200 46 0 chr1 168568836 168568901 -28626531 + G-rich Low_complexity Low_complexity 5 72 0 6 1871 32 43 0 0 chr1 168568969 168569015 -28626417 + AT_rich Low_complexity Low_complexity 1 46 0 6 1871 234 0 0 0 chr1 168569371 168569397 -28626035 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1871 373 309 91 20 chr1 168570735 168570933 -28624499 - MER33 DNA MER1_type -95 229 18 6 1871 912 68 0 0 chr1 168571270 168571403 -28624029 + (GA)n Simple_repeat Simple_repeat 2 134 0 7 1871 184 277 56 78 chr1 168572109 168572199 -28623233 - L4 LINE RTE -1898 131 44 7 1871 29 28 0 0 chr1 168573764 168573800 -28621632 + AT_rich Low_complexity Low_complexity 1 36 0 7 1871 690 313 90 20 chr1 168573807 168574107 -28621325 + MER2 DNA MER2_type 10 330 -15 7 1871 22 0 0 0 chr1 168574213 168574235 -28621197 + AT_rich Low_complexity Low_complexity 1 22 0 7 1871 3234 204 29 55 chr1 168574514 168575283 -28620149 + Lx6 LINE L1 6700 7448 -12 7 1871 279 140 0 0 chr1 168575862 168575912 -28619520 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1871 1134 82 0 0 chr1 168575915 168576061 -28619371 - B1_Mm SINE Alu 0 147 2 7 1871 926 230 20 5 chr1 168576115 168576316 -28619116 - B3 SINE B2 -11 205 2 7 1871 840 104 0 0 chr1 168576679 168576804 -28618628 + (TA)n Simple_repeat Simple_repeat 2 126 0 7 1871 24 53 0 0 chr1 168576948 168576986 -28618446 + AT_rich Low_complexity Low_complexity 1 38 0 8 1871 1507 279 36 33 chr1 168578769 168579406 -28616026 + Lx9 LINE L1 6571 7209 -435 8 1871 908 323 124 15 chr1 168579406 168579802 -28615630 - MLT2B5 LTR ERVL -275 442 4 8 1871 435 52 0 0 chr1 168579916 168579974 -28615458 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1871 432 0 0 0 chr1 168579974 168580021 -28615411 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1871 476 331 6 6 chr1 168582362 168582538 -28612894 - MERVL_2A-int LTR ERVL -807 4954 4779 8 1871 450 0 0 0 chr1 168583823 168583873 -28611559 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 8 1871 387 0 0 0 chr1 168583873 168583915 -28611517 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1871 528 246 82 0 chr1 168583916 168584050 -28611382 - B3A SINE B2 -52 146 2 8 1871 583 277 101 103 chr1 168584235 168584593 -28610839 + ORR1E LTR MaLR 3 359 0 8 1871 792 305 33 113 chr1 168584937 168586033 -28609399 - L1M2 LINE L1 -3039 3104 2096 9 1871 8898 78 13 8 chr1 168586110 168588156 -28607276 - L1_Mus1 LINE L1 0 6567 4520 9 1871 296 277 35 18 chr1 168588562 168588731 -28606701 - L1_Mur3 LINE L1 -4171 1709 1538 9 1871 773 255 98 0 chr1 168588860 168589044 -28606388 - B3 SINE B2 -1 215 14 9 1871 443 0 0 50 chr1 168589044 168589104 -28606328 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1871 1958 172 36 80 chr1 168589106 168589555 -28605877 - Lx4A LINE L1 -9 7049 6621 9 1871 3125 123 28 0 chr1 168589545 168590047 -28605385 + L1_Mur2 LINE L1 5360 5875 -2 9 1871 2817 120 37 0 chr1 168590053 168590544 -28604888 + L1_Mur2 LINE L1 3536 4044 -1833 9 1871 208 104 41 20 chr1 168594052 168594101 -28601331 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 9 1871 252 264 10 125 chr1 168594140 168594244 -28601188 - RSINE1 SINE B4 0 165 74 9 1871 361 318 0 0 chr1 168594193 168594278 -28601154 + RSINE1 SINE B4 11 95 -70 1 1871 264 136 0 0 chr1 168594851 168594895 -28600537 + Lx7 LINE L1 5347 5390 -490 1 1871 7117 206 42 51 chr1 168594908 168596744 -28598688 + Lx7 LINE L1 5484 7357 -339 1 1871 923 155 0 20 chr1 168596744 168596895 -28598537 - B1_Mur3 SINE Alu -1 148 1 1 1871 7117 220 50 62 chr1 168596895 168597224 -28598208 + Lx7 LINE L1 7358 7626 -70 1 1871 387 0 0 0 chr1 168597738 168597781 -28597651 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1871 739 310 36 105 chr1 168597798 168598009 -28597423 - B4A SINE B4 -1 291 87 1 1871 1376 72 11 11 chr1 168598009 168598193 -28597239 - B2_Mm1t SINE B2 -9 184 1 1 1871 739 310 36 105 chr1 168598193 168598287 -28597145 - B4A SINE B4 -206 86 7 1 1871 207 203 0 0 chr1 168599046 168599110 -28596322 + T-rich Low_complexity Low_complexity 1 64 0 1 1871 1170 48 0 40 chr1 168599110 168599262 -28596170 - B1_Mm SINE Alu 0 147 2 1 1871 269 269 8 20 chr1 168600178 168600438 -28594994 + (TCCA)n Simple_repeat Simple_repeat 1 256 0 1 1871 248 130 22 0 chr1 168600500 168600546 -28594886 + CT-rich Low_complexity Low_complexity 2 48 0 1 1871 348 170 40 0 chr1 168600566 168600666 -28594766 + (CCCA)n Simple_repeat Simple_repeat 3 106 0 1 1871 235 241 0 17 chr1 168600667 168600726 -28594706 + CT-rich Low_complexity Low_complexity 2 59 0 1 1871 950 330 18 0 chr1 168602333 168602615 -28592817 + B4A SINE B4 6 292 0 1 1871 266 309 0 113 chr1 168602556 168602662 -28592770 + B3 SINE B2 106 199 -17 1 1871 253 294 23 12 chr1 168602898 168602984 -28592448 - MLT1A LTR MaLR -213 161 75 1 1871 277 209 138 8 chr1 168605857 168605987 -28589445 + Lx9 LINE L1 7498 7644 0 1 1871 21 57 0 0 chr1 168606176 168606211 -28589221 + AT_rich Low_complexity Low_complexity 1 35 0 1 1871 411 252 0 10 chr1 168606224 168606328 -28589104 + L1VL4 LINE L1 184 286 -6016 1 1871 426 0 0 16 chr1 168606331 168606395 -28589037 + L1_Mus4 LINE L1 6569 6631 -5 1 1871 180 111 0 0 chr1 168607221 168607248 -28588184 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1871 405 0 0 0 chr1 168607577 168607622 -28587810 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1871 272 243 86 46 chr1 168608003 168608154 -28587278 + L1MEg LINE L1 1244 1400 -4684 1 1871 390 329 165 16 chr1 168608641 168609211 -28586221 + L2a LINE L2 2761 3425 -1 1 1871 333 62 0 0 chr1 168610753 168610801 -28584631 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1871 188 297 75 32 chr1 168611272 168611366 -28584066 - L2b LINE L2 -34 3341 3244 1 1871 195 42 0 0 chr1 168612910 168612934 -28582498 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1871 3364 24 0 3 chr1 168614342 168614717 -28580715 + L1Md_F2 LINE L1 6209 6582 0 1 1871 223 28 27 27 chr1 168614992 168615029 -28580403 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1 1871 1257 68 0 0 chr1 168615029 168615176 -28580256 - B1_Mus1 SINE Alu 0 148 2 1 1871 5184 57 0 8 chr1 168615201 168615823 -28579609 - L1Md_F2 LINE L1 0 6582 5966 1 1871 4249 54 0 2 chr1 168616090 168616587 -28578845 - L1Md_F2 LINE L1 -7 6575 6080 1 1871 360 324 26 42 chr1 168616768 168616961 -28578471 + Charlie7 DNA MER1_type 268 457 -2155 1 1871 235 167 16 48 chr1 168618407 168618470 -28576962 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1 1871 363 148 0 0 chr1 168619849 168619910 -28575522 - URR1B DNA MER1_type -55 170 110 1 1871 452 319 138 47 chr1 168621294 168621570 -28573862 + MLT2D LTR ERVL 13 313 -101 1 1871 617 280 139 23 chr1 168622204 168622420 -28573012 + ORR1E LTR MaLR 1 241 -118 1 1871 432 283 235 22 chr1 168622630 168622912 -28572520 + MER58B DNA MER1_type 1 341 0 1 1871 549 309 24 12 chr1 168624412 168624576 -28570856 + MER5A DNA MER1_type 1 166 -23 1 1871 5149 18 0 0 chr1 168624587 168625137 -28570295 + L1Md_A LINE L1 6033 6582 0 1 1871 3821 140 17 3 chr1 168625392 168626110 -28569322 + Lx3C LINE L1 5262 5995 -981 1 1871 608 184 0 0 chr1 168626120 168626223 -28569209 - Lx9 LINE L1 -623 7021 6919 1 1871 782 247 108 19 chr1 168626216 168626476 -28568956 + Lx9 LINE L1 7186 7468 -176 1 1871 652 134 23 23 chr1 168626888 168627064 -28568368 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1871 428 105 13 0 chr1 168627116 168627192 -28568240 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1871 198 0 0 0 chr1 168627192 168627214 -28568218 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1871 380 312 118 57 chr1 168627790 168627915 -28567517 - ORR1E LTR MaLR -63 296 165 1 1871 2602 140 42 12 chr1 168627915 168628321 -28567111 - MTC LTR MaLR -1 420 3 1 1871 380 312 118 57 chr1 168628321 168628474 -28566958 - ORR1E LTR MaLR -195 164 1 1 1871 207 157 0 0 chr1 168629479 168629530 -28565902 + T-rich Low_complexity Low_complexity 1 51 0 1 1871 371 364 86 53 chr1 168629921 168630258 -28565174 + L2 LINE L2 2629 2976 -443 1 1871 2283 126 28 0 chr1 168630307 168630625 -28564807 + ORR1A2 LTR MaLR 1 327 0 1 1871 189 331 247 55 chr1 168630625 168630991 -28564441 + L2a LINE L2 2940 3375 0 1 1871 1397 65 16 52 chr1 168631503 168631697 -28563735 - B2_Mm2 SINE B2 -8 187 1 1 1871 1422 97 16 0 chr1 168631697 168631883 -28563549 - B2_Mm2 SINE B2 -3 192 4 1 1871 270 0 0 0 chr1 168632022 168632052 -28563380 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1871 513 303 42 7 chr1 168632055 168632198 -28563234 - RSINE1 SINE B4 -13 152 5 1 1871 408 40 0 0 chr1 168633599 168633649 -28561783 + (TGG)n Simple_repeat Simple_repeat 1 50 0 1 1871 741 67 0 0 chr1 168633649 168633753 -28561679 + (TG)n Simple_repeat Simple_repeat 2 105 0 1 1871 297 0 0 0 chr1 168634196 168634229 -28561203 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1871 234 0 0 0 chr1 168634229 168634254 -28561178 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1871 522 280 0 23 chr1 168634567 168634695 -28560737 - ID_B1 SINE B4 -12 212 88 1 1871 345 227 30 0 chr1 168634748 168634814 -28560618 - B1F SINE Alu -17 132 65 1 1871 513 0 0 0 chr1 168635410 168635467 -28559965 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1871 1245 68 0 0 chr1 168636100 168636247 -28559185 + B1_Mus1 SINE Alu 2 148 0 1 1871 430 214 169 0 chr1 168636668 168636757 -28558675 - PB1D10 SINE Alu -11 106 3 1 1871 920 185 11 11 chr1 168636882 168637057 -28558375 - Lx5 LINE L1 -2 7048 6874 1 1871 500 16 31 0 chr1 168637092 168637156 -28558276 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 1871 841 200 12 24 chr1 168637210 168637374 -28558058 + B2_Mm2 SINE B2 3 164 -31 1 1871 288 70 0 0 chr1 168637374 168637417 -28558015 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1871 243 0 0 0 chr1 168638285 168638312 -28557120 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1871 333 295 144 72 chr1 168638476 168638615 -28556817 + RSINE1 SINE B4 11 159 -6 1 1871 29 0 0 0 chr1 168638618 168638647 -28556785 + AT_rich Low_complexity Low_complexity 1 29 0 1 1871 24 67 0 0 chr1 168639029 168639074 -28556358 + AT_rich Low_complexity Low_complexity 1 45 0 1 1871 22 56 0 0 chr1 168639200 168639236 -28556196 + AT_rich Low_complexity Low_complexity 1 36 0 1 1871 470 240 90 8 chr1 168639372 168639494 -28555938 - B1F1 SINE Alu -8 141 10 1 1871 394 295 92 127 chr1 168640111 168640480 -28554952 - ORR1E LTR MaLR 0 359 4 1 1871 225 300 66 16 chr1 168640491 168640552 -28554880 - ORR1E LTR MaLR -239 120 57 1 1871 207 146 0 0 chr1 168640563 168640604 -28554828 + (TGGGGG)n Simple_repeat Simple_repeat 6 46 0 1 1871 300 208 27 40 chr1 168640609 168640684 -28554748 - ORR1E LTR MaLR -284 75 2 1 1871 235 45 0 64 chr1 168641822 168641869 -28553563 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1871 1111 95 0 0 chr1 168641896 168642033 -28553399 - B1_Mus1 SINE Alu -10 138 2 1 1871 645 171 11 6 chr1 168644730 168644906 -28550526 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1871 194 296 152 22 chr1 168645434 168645572 -28549860 - MIRb SINE MIR -30 238 83 1 1871 232 236 16 91 chr1 168645875 168645996 -28549436 + (CATATA)n Simple_repeat Simple_repeat 4 115 0 1 1871 257 241 25 25 chr1 168645903 168645984 -28549448 + (CATA)n Simple_repeat Simple_repeat 2 82 0 1 1871 229 301 14 0 chr1 168646154 168646262 -28549170 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1871 617 260 21 83 chr1 168646343 168646416 -28549016 - B3A SINE B2 -16 182 124 1 1871 2525 169 142 54 chr1 168646416 168646953 -28548479 - RLTR31A_Mm LTR ERVK 0 584 1 1 1871 617 260 21 83 chr1 168646953 168647072 -28548360 - B3A SINE B2 -75 123 2 1 1871 555 220 197 0 chr1 168647494 168647712 -28547720 + Lx9 LINE L1 7383 7643 -1 1 1871 396 0 0 0 chr1 168647826 168647870 -28547562 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1871 245 306 47 84 chr1 168648019 168648126 -28547306 - MER20 DNA MER1_type -4 215 113 1 1871 260 237 26 13 chr1 168648172 168648249 -28547183 - RLTR40 LTR ERVK -50 767 690 1 1871 571 263 93 128 chr1 168648805 168648954 -28546478 - L1MC1 LINE L1 -198 6135 6016 1 1871 1236 96 0 0 chr1 168648954 168649131 -28546301 + (TTC)n Simple_repeat Simple_repeat 3 179 0 1 1871 571 251 69 129 chr1 168649131 168649510 -28545922 - L1MC1 LINE L1 -318 6015 5625 1 1871 505 321 14 7 chr1 168649538 168649679 -28545753 + RSINE1 SINE B4 3 144 -21 1 1871 21 36 0 0 chr1 168649707 168649735 -28545697 + AT_rich Low_complexity Low_complexity 1 28 0 1 1871 6220 102 11 9 chr1 168650417 168651268 -28544164 - Lx2A1 LINE L1 -6 7002 6151 1 1871 273 300 64 78 chr1 168651275 168651416 -28544016 - MIR SINE MIR -89 173 35 1 1871 21 0 0 0 chr1 168651496 168651517 -28543915 + AT_rich Low_complexity Low_complexity 1 21 0 1 1871 1239 274 237 2 chr1 168652040 168652453 -28542979 - Lx8 LINE L1 -767 6706 6197 1 1871 667 269 64 5 chr1 168652466 168652515 -28542917 - B3A SINE B2 0 198 147 1 1871 279 0 0 0 chr1 168652515 168652546 -28542886 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1871 667 269 64 5 chr1 168652546 168652683 -28542749 - B3A SINE B2 -52 146 1 1 1871 640 309 5 87 chr1 168652962 168653168 -28542264 + B3A SINE B2 1 189 -9 2 1871 3680 86 4 26 chr1 168653186 168653679 -28541753 + Lx LINE L1 6167 6648 -6 2 1871 351 337 11 0 chr1 168653793 168653888 -28541544 + PB1 SINE Alu 3 98 -29 2 1871 249 296 86 17 chr1 168654166 168654283 -28541149 + MER5A1 DNA MER1_type 3 127 -39 2 1871 217 341 190 40 chr1 168654817 168655144 -28540288 + L2a LINE L2 3042 3417 -9 2 1871 27607 142 17 24 chr1 168655528 168660508 -28534924 + Lx5 LINE L1 980 5928 -1122 2 1871 291 254 24 63 chr1 168660529 168660655 -28534777 + Lx4B LINE L1 6938 7058 0 2 1871 189 229 21 0 chr1 168660718 168660766 -28534666 + L2 LINE L2 1746 1794 -1625 2 1871 605 269 13 51 chr1 168660781 168660938 -28534494 + RSINE1 SINE B4 1 151 -14 2 1871 441 0 0 0 chr1 168660954 168661003 -28534429 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1871 233 98 24 0 chr1 168661003 168661043 -28534389 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1871 369 0 0 0 chr1 168661043 168661083 -28534349 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1871 202 339 44 9 chr1 168661232 168661345 -28534087 + L2 LINE L2 2675 2791 -628 2 1871 271 220 0 17 chr1 168661395 168661455 -28533977 - RSINE1 SINE B4 -105 60 2 2 1871 960 212 196 13 chr1 168661849 168662155 -28533277 - MTD LTR MaLR -12 407 46 2 1871 378 280 136 0 chr1 168663027 168663145 -28532287 - B1F1 SINE Alu -6 143 10 2 1871 474 318 26 41 chr1 168665377 168665643 -28529789 - B4A SINE B4 -22 270 9 2 1871 21 57 0 0 chr1 168666278 168666313 -28529119 + AT_rich Low_complexity Low_complexity 1 35 0 2 1871 240 35 0 0 chr1 168666322 168666351 -28529081 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1871 321 257 0 75 chr1 168666351 168666431 -28529001 - RSINE1 SINE B4 -15 150 77 2 1871 350 297 4 0 chr1 168666473 168666567 -28528865 + B4A SINE B4 188 284 -8 2 1871 24 32 0 0 chr1 168668087 168668118 -28527314 + AT_rich Low_complexity Low_complexity 1 31 0 2 1871 693 114 0 0 chr1 168668718 168668823 -28526609 + (GGGA)n Simple_repeat Simple_repeat 4 108 0 2 1871 22 0 0 0 chr1 168669212 168669234 -28526198 + AT_rich Low_complexity Low_complexity 1 22 0 2 1871 9218 2 0 0 chr1 168669502 168670731 -28524701 - L1Md_A LINE L1 0 6582 5354 2 1871 288 0 0 0 chr1 168671272 168671304 -28524128 + (TTA)n Simple_repeat Simple_repeat 3 34 0 2 1871 7145 157 47 20 chr1 168671305 168672882 -28522550 - Lx2B LINE L1 -27 6973 5352 2 1871 775 105 8 8 chr1 168672918 168673052 -28522380 + (TC)n Simple_repeat Simple_repeat 2 135 0 2 1871 207 0 0 0 chr1 168674840 168674863 -28520569 + (CAG)n Simple_repeat Simple_repeat 1 23 0 2 1871 546 81 58 29 chr1 168675058 168675197 -28520235 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 2 1871 361 277 156 55 chr1 168675710 168675947 -28519485 + ORR1E LTR MaLR 90 350 -9 2 1871 464 190 0 6 chr1 168676729 168676888 -28518544 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1871 910 277 66 0 chr1 168677042 168677298 -28518134 - B4A SINE B4 -18 274 2 2 1871 252 0 0 0 chr1 168677442 168677470 -28517962 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1871 761 299 66 59 chr1 168677879 168678287 -28517145 + MTC LTR MaLR 6 416 -5 2 1871 363 243 219 128 chr1 168678292 168678650 -28516782 + MTC-int LTR MaLR 1 394 -864 2 1871 507 299 115 8 chr1 168678661 168679040 -28516392 + L1MA9 LINE L1 1474 2015 -4638 2 1871 216 191 22 11 chr1 168679188 168679278 -28516154 + (TA)n Simple_repeat Simple_repeat 2 92 0 2 1871 180 0 0 0 chr1 168679280 168679300 -28516132 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1871 486 296 50 47 chr1 168679440 168679738 -28515694 - L1M3 LINE L1 -1809 4334 4036 2 1871 2409 246 92 22 chr1 168680141 168681017 -28514415 - L1M3 LINE L1 -2202 3938 3001 2 1871 377 276 40 75 chr1 168681354 168681581 -28513851 - L1M3 LINE L1 -3182 2958 2740 2 1871 639 278 81 34 chr1 168681594 168681952 -28513480 + L1MA9 LINE L1 4916 5290 -1439 2 1871 583 180 6 27 chr1 168682196 168682379 -28513053 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1871 1249 104 12 0 chr1 168682406 168682579 -28512853 + B2_Mm1t SINE B2 5 179 -14 2 1871 372 123 365 9 chr1 168682648 168682755 -28512677 + B2_Mm2 SINE B2 47 191 -4 2 1871 339 252 324 0 chr1 168682758 168682968 -28512464 + L1MA9 LINE L1 6408 6685 -213 2 1871 613 305 10 10 chr1 168683191 168683383 -28512049 - MLT1G3 LTR MaLR -154 441 250 2 1871 1337 250 0 23 chr1 168683489 168683796 -28511636 - L1_Rod LINE L1 -1689 4158 3859 2 1871 936 312 14 17 chr1 168684398 168684685 -28510747 - B4A SINE B4 0 292 7 2 1871 312 148 0 0 chr1 168684896 168684957 -28510475 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1871 192 300 0 0 chr1 168685409 168685459 -28509973 - MIRm SINE MIR -17 259 210 2 1871 2477 58 16 3 chr1 168685897 168686210 -28509222 + L1_Mus1 LINE L1 6251 6567 0 2 1871 637 70 0 58 chr1 168686871 168686992 -28508440 - L1Md_F3 LINE L1 0 6584 6471 2 1871 326 319 79 14 chr1 168687214 168687354 -28508078 + ORR1E LTR MaLR 1 149 -210 2 1871 3393 88 0 13 chr1 168687375 168687837 -28507595 - L1_Mus4 LINE L1 -2 6634 6179 2 1871 2190 60 14 11 chr1 168687838 168688124 -28507308 - L1_Mus4 LINE L1 -655 5981 5695 2 1871 553 112 19 7 chr1 168688107 168688215 -28507217 - L1_Mur1 LINE L1 -2521 3365 3252 2 1871 831 244 117 54 chr1 168688605 168689033 -28506399 - RMER13A LTR ERVK -394 466 12 2 1871 992 286 65 6 chr1 168689237 168689561 -28505871 + ORR1E LTR MaLR 15 357 -2 2 233 249 109 0 0 chr1 168689629 168689675 -28505757 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 1872 215 340 122 19 chr1 168690208 168690364 -28505068 + MIRb SINE MIR 35 206 -62 2 1872 595 155 155 0 chr1 168691345 168691474 -28503958 + RLTR47_MM LTR ERV1 347 495 -37 2 1872 3122 123 0 8 chr1 168691617 168692124 -28503308 + MT2B2 LTR ERVL 1 503 -81 2 1872 1942 98 3 69 chr1 168693277 168693626 -28501806 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 1872 29957 8 1 0 chr1 168693626 168696862 -28498570 - IAPEz-int LTR ERVK 0 6481 3244 2 1872 24385 11 6 26 chr1 168696854 168699659 -28495773 - IAPEz-int LTR ERVK -3730 2751 1 2 1872 1945 98 3 69 chr1 168699660 168700009 -28495423 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 1872 287 191 0 14 chr1 168700614 168700683 -28494749 + GA-rich Low_complexity Low_complexity 3 70 0 2 1872 1102 95 0 0 chr1 168700710 168700857 -28494575 + B1_Mus2 SINE Alu 1 147 0 2 1872 677 134 323 0 chr1 168700887 168701051 -28494381 + Lx3C LINE L1 6760 6976 0 2 1872 615 27 0 0 chr1 168701409 168701482 -28493950 + (GGGAA)n Simple_repeat Simple_repeat 1 73 0 2 1872 411 328 42 95 chr1 168701595 168701858 -28493574 + B4 SINE B4 44 292 0 2 1872 530 54 14 0 chr1 168701919 168701993 -28493439 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 2 1872 1256 113 11 0 chr1 168702827 168703004 -28492428 + B2_Mm1t SINE B2 1 179 -14 2 1872 297 140 333 18 chr1 168703089 168703197 -28492235 + B2_Mm2 SINE B2 47 188 -7 2 1872 313 210 0 24 chr1 168704803 168704886 -28490546 + MLT1B LTR MaLR 292 372 -18 2 1872 253 296 0 0 chr1 168704887 168704958 -28490474 - MLT1J2 LTR MaLR 0 448 378 2 1872 414 0 0 0 chr1 168705213 168705259 -28490173 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1872 234 0 0 0 chr1 168705259 168705284 -28490148 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1872 1779 152 11 26 chr1 168705313 168705663 -28489769 - RMER6C LTR ERVK 0 690 346 2 1872 269 256 0 99 chr1 168705668 168705759 -28489673 - B1_Mus2 SINE Alu -63 84 3 2 1872 540 168 0 123 chr1 168705759 168705853 -28489579 - MT2B LTR ERVL -342 259 181 2 1872 538 302 48 26 chr1 168705901 168706173 -28489259 - B4A SINE B4 -14 278 1 2 1872 2215 129 43 13 chr1 168707424 168707816 -28487616 - RMER20A LTR ERVK -111 405 2 2 1872 341 307 0 0 chr1 168707817 168707924 -28487508 - MTEb LTR MaLR -216 163 57 2 1872 224 200 17 0 chr1 168708319 168708379 -28487053 + GA-rich Low_complexity Low_complexity 3 63 0 2 1872 579 205 10 128 chr1 168708417 168708613 -28486819 + RMER5 LTR ERV1 170 342 -192 2 1872 1737 193 15 6 chr1 168708620 168708948 -28486484 - Lx4B LINE L1 -4 7054 6724 2 1872 1144 149 0 0 chr1 168708960 168709135 -28486297 + Lx4B LINE L1 5674 5848 -1210 2 1872 1149 178 0 32 chr1 168709133 168709353 -28486079 + Lx5 LINE L1 6478 6690 -360 2 1872 943 165 11 16 chr1 168709354 168709539 -28485893 + RMER5 LTR ERV1 330 513 -21 2 1872 258 235 0 0 chr1 168710420 168710471 -28484961 - ID SINE ID -169 55 5 2 1872 366 313 156 15 chr1 168710582 168711036 -28484396 - L1ME3A LINE L1 -200 5973 5456 2 1872 244 274 0 27 chr1 168711337 168711412 -28484020 - B4A SINE B4 -1 291 219 2 1872 225 94 0 0 chr1 168711420 168711452 -28483980 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 2 1872 546 192 48 0 chr1 168711458 168711562 -28483870 - RSINE1 SINE B4 -39 126 18 2 1872 543 16 0 0 chr1 168711564 168711628 -28483804 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1872 491 318 19 51 chr1 168711636 168711792 -28483640 - B4A SINE B4 -59 233 83 2 1872 26 30 0 0 chr1 168711906 168711939 -28483493 + AT_rich Low_complexity Low_complexity 1 33 0 2 1872 223 278 99 38 chr1 168712745 168712876 -28482556 - MIR SINE MIR -110 152 14 2 1872 1186 277 57 32 chr1 168713602 168713972 -28481460 + MTEa LTR MaLR 1 379 0 2 1872 241 339 30 90 chr1 168714266 168714467 -28480965 + MIR SINE MIR 34 222 -40 2 1872 213 308 0 15 chr1 168714488 168714554 -28480878 + (TATG)n Simple_repeat Simple_repeat 4 68 0 2 1872 4299 288 75 47 chr1 168715615 168717626 -28477806 - L1MB5 LINE L1 -145 6029 3918 2 1872 785 236 79 28 chr1 168717664 168717878 -28477554 - Lx8 LINE L1 -28 7445 7221 2 1872 372 264 9 0 chr1 168717883 168717993 -28477439 - L1MB5 LINE L1 -2206 3934 3824 2 1872 2690 262 42 25 chr1 168720264 168720950 -28474482 - Lx6 LINE L1 -26 7434 6737 2 1872 245 348 90 37 chr1 168721938 168722126 -28473306 + L1MEf LINE L1 132 329 -5913 2 1872 481 124 17 17 chr1 168722286 168722401 -28473031 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 2 1872 730 269 177 41 chr1 168722413 168723095 -28472337 + L1MEf LINE L1 3048 3822 -2324 2 1872 1067 234 45 17 chr1 168723235 168723522 -28471910 - ORR1E LTR MaLR 0 359 65 2 1872 200 185 167 0 chr1 168724975 168725029 -28470403 + L2a LINE L2 3361 3423 -3 2 1872 225 0 0 0 chr1 168725444 168725469 -28469963 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1872 615 177 0 0 chr1 168727398 168727562 -28467870 + CT-rich Low_complexity Low_complexity 1 164 0 3 1872 230 193 18 0 chr1 168727578 168727635 -28467797 + CT-rich Low_complexity Low_complexity 3 60 0 3 1872 238 357 0 26 chr1 168727819 168727934 -28467498 + L2c LINE L2 3276 3387 0 3 1872 23 0 0 0 chr1 168728222 168728245 -28467187 + AT_rich Low_complexity Low_complexity 1 23 0 3 1872 267 211 0 0 chr1 168728503 168728560 -28466872 + B3 SINE B2 153 209 -7 3 1872 201 321 0 0 chr1 168729344 168729400 -28466032 + L2c LINE L2 2670 2725 -694 3 1872 197 297 126 60 chr1 168729612 168729986 -28465446 + L2c LINE L2 3025 3426 0 3 1872 641 262 87 6 chr1 168730002 168730175 -28465257 + Lx8 LINE L1 6935 7121 -352 3 1872 238 133 62 62 chr1 168730179 168730243 -28465189 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 3 1872 437 0 19 0 chr1 168731829 168731882 -28463550 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1872 216 158 0 0 chr1 168732924 168732962 -28462470 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 1872 258 320 69 44 chr1 168733715 168733875 -28461557 - MIRb SINE MIR -57 211 48 3 1872 237 344 38 25 chr1 168734060 168734218 -28461214 + MIR SINE MIR 94 253 -9 3 1872 939 186 0 0 chr1 168734964 168735238 -28460194 + GA-rich Low_complexity Low_complexity 1 274 0 3 1872 880 201 105 45 chr1 168735375 168735786 -28459646 + L1MA6 LINE L1 5792 6269 -22 3 1872 372 326 89 76 chr1 168736295 168736550 -28458882 - MIR SINE MIR -3 259 2 3 1872 539 176 221 0 chr1 168739650 168739781 -28455651 - MER5A1 DNA MER1_type -5 161 2 3 1872 326 304 25 76 chr1 168739779 168739936 -28455496 + MER5A DNA MER1_type 2 150 -39 3 1872 241 241 218 0 chr1 168739981 168740068 -28455364 + MIRb SINE MIR 22 127 -141 3 1872 1032 83 14 0 chr1 168740208 168740353 -28455079 - B1_Mus1 SINE Alu 0 148 2 3 1872 284 120 0 20 chr1 168740745 168740796 -28454636 + (GGA)n Simple_repeat Simple_repeat 1 50 0 3 1872 1140 124 0 0 chr1 168740796 168740974 -28454458 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1872 351 0 0 0 chr1 168740975 168741014 -28454418 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 3 1872 270 365 6 43 chr1 168742964 168743127 -28452305 - MIRb SINE MIR -92 176 20 3 1872 209 217 0 47 chr1 168743488 168743551 -28451881 + A-rich Low_complexity Low_complexity 1 60 0 3 1872 495 211 154 0 chr1 168743676 168743799 -28451633 - Lx6 LINE L1 -11 7449 7308 3 1872 908 168 12 6 chr1 168743790 168743958 -28451474 - L1_Mur3 LINE L1 -704 5176 5008 3 1872 650 253 0 46 chr1 168743948 168744122 -28451310 + Lx6 LINE L1 7269 7434 -26 3 1872 26 50 0 0 chr1 168744209 168744249 -28451183 + AT_rich Low_complexity Low_complexity 1 40 0 3 1872 1179 191 179 20 chr1 168744253 168744504 -28450928 - Lx6 LINE L1 -191 7269 6979 3 1872 626 280 21 0 chr1 168744516 168744702 -28450730 - B3A SINE B2 0 198 9 3 1872 374 229 74 33 chr1 168745469 168745591 -28449841 - MER5A1 DNA MER1_type -30 136 10 3 1872 346 217 43 2 chr1 168745708 168745808 -28449624 + L1M4 LINE L1 5517 5617 -625 3 1872 414 0 0 0 chr1 168746372 168746418 -28449014 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1872 367 281 35 14 chr1 168746439 168746580 -28448852 + MIRb SINE MIR 104 247 -21 3 1872 6516 128 24 24 chr1 168746653 168748180 -28447252 + Lx LINE L1 5114 6649 -5 3 1872 301 250 167 0 chr1 168748389 168748509 -28446923 - ID_B1 SINE B4 -1 223 84 3 1872 701 82 9 0 chr1 168748513 168748623 -28446809 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1872 970 236 28 57 chr1 168748677 168748960 -28446472 - B4 SINE B4 -2 290 16 3 1872 272 312 11 0 chr1 168749353 168749446 -28445986 - L1M5 LINE L1 -1310 4836 4743 3 1872 740 239 86 0 chr1 168750874 168751037 -28444395 + B3 SINE B2 35 211 -5 3 1872 706 247 59 0 chr1 168751343 168751513 -28443919 + B3A SINE B2 3 182 -16 3 1872 993 9 0 0 chr1 168752335 168752449 -28442983 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1872 242 274 308 0 chr1 168752524 168752641 -28442791 + RSINE1 SINE B4 2 154 -11 3 1872 312 119 0 0 chr1 168752914 168752973 -28442459 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1872 908 294 74 6 chr1 168753242 168753554 -28441878 + Lx8 LINE L1 6619 6951 -522 3 1872 638 247 0 6 chr1 168753572 168753751 -28441681 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3 1872 854 325 105 12 chr1 168753751 168754169 -28441263 + Lx8 LINE L1 6962 7418 -55 3 1872 832 260 47 0 chr1 168754915 168755107 -28440325 + B3 SINE B2 10 210 -6 3 1872 254 326 186 6 chr1 168755358 168755539 -28439893 - MIRb SINE MIR -27 235 28 3 1872 197 245 125 15 chr1 168756552 168756663 -28438769 + L2b LINE L2 3293 3426 0 3 1872 321 118 0 0 chr1 168756824 168756875 -28438557 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1872 201 74 0 0 chr1 168756878 168756905 -28438527 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1872 447 19 0 0 chr1 168757493 168757545 -28437887 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1872 1891 269 46 36 chr1 168757545 168758281 -28437151 + Lx8 LINE L1 5219 5962 -1511 3 1872 2509 136 13 5 chr1 168758281 168758672 -28436760 + ORR1B1 LTR MaLR 1 394 0 3 1872 1142 319 12 45 chr1 168758672 168758709 -28436723 + Lx8 LINE L1 5963 5998 -1475 3 1872 2607 300 85 29 chr1 168758706 168759775 -28435657 + Lx8 LINE L1 6157 7285 -188 3 1872 471 18 0 0 chr1 168759918 168759974 -28435458 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1872 379 286 167 32 chr1 168761029 168761466 -28433966 + L1MC4 LINE L1 7346 7841 -201 3 1872 523 348 17 8 chr1 168763642 168763877 -28431555 + LTR33C LTR ERVL 383 619 -10 3 1872 1026 247 114 48 chr1 168765069 168765401 -28430031 - ORR1E LTR MaLR -2 357 4 3 1872 1244 256 32 13 chr1 168766728 168767037 -28428395 + Lx8 LINE L1 6341 6655 -818 3 1872 782 249 132 42 chr1 168767036 168767217 -28428215 + Lx9 LINE L1 7150 7350 -294 3 1872 198 0 0 0 chr1 168767217 168767239 -28428193 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1872 1155 117 0 0 chr1 168767239 168767418 -28428014 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1872 782 249 132 42 chr1 168767418 168767545 -28427887 + Lx9 LINE L1 7351 7486 -158 3 1872 213 159 29 100 chr1 168767584 168767654 -28427778 + GA-rich Low_complexity Low_complexity 1 65 0 3 1872 899 176 0 0 chr1 168767922 168768064 -28427368 + B1_Mus1 SINE Alu 1 142 -6 3 1872 470 53 40 40 chr1 168768074 168768173 -28427259 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 3 1872 26 50 0 0 chr1 168768590 168768630 -28426802 + AT_rich Low_complexity Low_complexity 1 40 0 3 1872 188 306 125 9 chr1 168768848 168768960 -28426472 - MIR SINE MIR -18 244 120 3 1872 430 338 119 34 chr1 168769452 168769804 -28425628 + Lx8 LINE L1 7059 7440 -33 3 1872 243 0 0 0 chr1 168769805 168769832 -28425600 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1872 195 42 0 0 chr1 168769833 168769857 -28425575 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1872 22 0 0 0 chr1 168770867 168770889 -28424543 + GC_rich Low_complexity Low_complexity 1 22 0 3 1872 22 0 0 0 chr1 168772222 168772244 -28423188 + AT_rich Low_complexity Low_complexity 1 22 0 3 1872 190 270 31 31 chr1 168774340 168774405 -28421027 - MIRb SINE MIR -35 233 169 3 1872 636 292 13 13 chr1 168774885 168775041 -28420391 + B4A SINE B4 5 160 -132 3 1872 264 331 75 0 chr1 168775723 168775883 -28419549 - MIR SINE MIR -75 187 16 3 1872 209 365 73 45 chr1 168776271 168776449 -28418983 - MIRb SINE MIR -17 251 69 3 1872 395 323 130 38 chr1 168776770 168777400 -28418032 + L1M7 LINE L1 402 1089 -5129 3 1872 2457 84 21 59 chr1 168777533 168777873 -28417559 + ORR1A2 LTR MaLR 1 327 0 3 1872 729 0 0 0 chr1 168777940 168778021 -28417411 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 3 1872 338 289 37 12 chr1 168778078 168778219 -28417213 + L1M2c LINE L1 707 786 -6382 3 1872 363 301 128 75 chr1 168778826 168779332 -28416100 + L1M2c LINE L1 1781 2313 -4855 3 1872 258 278 148 63 chr1 168779373 168779596 -28415836 + L1M2c LINE L1 3388 3629 -3535 3 1872 301 236 8 159 chr1 168779605 168779731 -28415701 - MTE2a LTR MaLR -264 115 9 3 1872 321 122 0 58 chr1 168779885 168779989 -28415443 + (TCTCTG)n Simple_repeat Simple_repeat 4 101 0 3 1872 218 250 0 0 chr1 168779991 168780043 -28415389 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1872 201 206 0 31 chr1 168780839 168780904 -28414528 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1872 282 304 105 64 chr1 168780985 168781157 -28414275 + ORR1E LTR MaLR 75 253 -106 3 1872 231 231 19 0 chr1 168781381 168781433 -28413999 + ORR1E LTR MaLR 326 378 -1 3 1872 2251 321 148 57 chr1 168781462 168782041 -28413391 + ORR1E-int LTR MaLR 46 711 -869 3 1872 189 0 0 0 chr1 168782041 168782062 -28413370 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1872 2251 321 148 57 chr1 168782062 168782864 -28412568 + ORR1E-int LTR MaLR 712 1552 -28 3 1872 363 367 64 71 chr1 168782846 168783142 -28412290 + ORR1E LTR MaLR 9 302 -57 3 1872 23 0 0 0 chr1 168783575 168783598 -28411834 + AT_rich Low_complexity Low_complexity 1 23 0 3 1872 396 0 0 0 chr1 168784024 168784068 -28411364 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1872 1429 268 64 95 chr1 168784748 168785276 -28410156 + RLTR18B LTR ERVK 1 512 0 3 1872 288 314 0 0 chr1 168786043 168786129 -28409303 + Tigger7 DNA MER2_type 13 98 -2393 3 1872 1281 254 43 15 chr1 168786145 168786473 -28408959 - ORR1E LTR MaLR -5 354 18 3 1872 358 375 141 8 chr1 168786480 168786743 -28408689 + Tigger7 DNA MER2_type 108 405 -2086 3 1872 259 270 67 0 chr1 168786743 168786832 -28408600 + Tigger7 DNA MER2_type 2243 2337 -154 3 1872 252 316 44 49 chr1 168786932 168787115 -28408317 - L1_Mur1 LINE L1 -4179 1707 1526 3 1872 21 104 0 0 chr1 168787520 168787597 -28407835 + AT_rich Low_complexity Low_complexity 1 77 0 3 1872 408 179 0 0 chr1 168787619 168787697 -28407735 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1872 277 125 0 35 chr1 168787697 168787755 -28407677 + GA-rich Low_complexity Low_complexity 3 58 0 3 1872 321 116 14 28 chr1 168788924 168788995 -28406437 + GA-rich Low_complexity Low_complexity 1 70 0 3 1872 268 214 196 4 chr1 168789198 168789326 -28406106 - MIRc SINE MIR -4 258 108 3 1872 270 0 0 0 chr1 168789465 168789495 -28405937 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1872 1181 250 32 7 chr1 168790505 168790783 -28404649 + B4A SINE B4 1 285 -7 3 1872 22 0 0 0 chr1 168790938 168790960 -28404472 + AT_rich Low_complexity Low_complexity 1 22 0 3 1872 420 289 124 15 chr1 168791307 168791444 -28403988 + B3A SINE B2 25 176 -22 3 1872 22 0 0 0 chr1 168791510 168791532 -28403900 + AT_rich Low_complexity Low_complexity 1 22 0 3 1872 497 316 55 83 chr1 168791582 168791944 -28403488 + ORR1E LTR MaLR 8 359 0 3 1872 2153 136 93 3 chr1 168792089 168792442 -28402990 + ORR1B1 LTR MaLR 2 386 -8 4 1872 295 333 34 43 chr1 168792454 168792689 -28402743 - MER31-int LTR ERV1 -1970 2966 2734 4 1872 501 17 0 0 chr1 168794169 168794227 -28401205 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1872 23 33 0 0 chr1 168794260 168794290 -28401142 + AT_rich Low_complexity Low_complexity 1 30 0 4 1872 1200 95 0 0 chr1 168794338 168794485 -28400947 - B1_Mus2 SINE Alu 0 147 1 4 1872 6496 106 15 2 chr1 168794496 168795370 -28400062 - Lx2 LINE L1 0 6997 6113 4 1872 824 235 86 13 chr1 168795783 168796016 -28399416 + Lx9 LINE L1 7384 7633 -11 4 1872 21 0 0 0 chr1 168796029 168796050 -28399382 + AT_rich Low_complexity Low_complexity 1 21 0 4 1872 183 275 27 68 chr1 168796698 168796772 -28398660 + MIRc SINE MIR 82 152 -116 4 1872 268 269 16 90 chr1 168797475 168797619 -28397813 + L1MD2 LINE L1 5197 5330 -816 4 1872 498 17 0 0 chr1 168797619 168797678 -28397754 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1872 2633 204 54 25 chr1 168797679 168798286 -28397146 + Lx9 LINE L1 7017 7641 -3 4 1872 393 22 0 0 chr1 168798286 168798332 -28397100 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1872 462 263 1 0 chr1 168798332 168798464 -28396968 + L1MD2 LINE L1 5337 5469 -2526 4 1872 1058 316 10 38 chr1 168798469 168798762 -28396670 + B4A SINE B4 8 292 0 4 1872 528 315 14 16 chr1 168798815 168799006 -28396426 + L1MD2 LINE L1 5451 5639 -601 4 1872 546 287 101 6 chr1 168799114 168799179 -28396253 + L1MD2 LINE L1 5823 5904 -455 4 1872 5424 64 23 5 chr1 168799179 168799838 -28395594 - L1Md_F2 LINE L1 -16 6566 5896 4 1872 546 300 95 9 chr1 168799838 168799993 -28395439 + L1MD2 LINE L1 5900 6057 -122 4 1872 419 212 229 0 chr1 168801328 168801446 -28393986 - MER5A DNA MER1_type 0 189 45 4 1872 363 23 0 0 chr1 168801450 168801494 -28393938 + (CTG)n Simple_repeat Simple_repeat 1 44 0 4 1872 1712 94 0 17 chr1 168802105 168802343 -28393089 + Lx LINE L1 6415 6648 -6 4 1872 22787 21 0 0 chr1 168802456 168805067 -28390365 + L1Md_T LINE L1 2976 5586 -297 4 1872 9528 6 0 2 chr1 168805067 168806065 -28389367 + L1Md_T LINE L1 5587 6582 0 4 1872 297 312 125 0 chr1 168806135 168806231 -28389201 - MLT1E1A LTR MaLR -524 130 23 4 1872 336 305 72 21 chr1 168807619 168807806 -28387626 + MIR SINE MIR 9 193 -69 4 1872 1275 316 69 58 chr1 168807814 168808553 -28386879 + L1MCa LINE L1 3 749 -5759 4 1872 787 149 17 11 chr1 168808586 168808713 -28386719 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1872 288 0 0 0 chr1 168808713 168808745 -28386687 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1872 787 149 17 11 chr1 168808745 168808794 -28386638 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1872 235 329 77 66 chr1 168808805 168808896 -28386536 - B4 SINE B4 0 292 201 4 1872 232 291 66 80 chr1 168808954 168809102 -28386330 - B4A SINE B4 -123 169 1 4 1872 1420 253 44 66 chr1 168809102 168809720 -28385712 + L1MCa LINE L1 762 1365 -5143 4 1872 619 225 48 5 chr1 168809789 168809977 -28385455 + L1MCa LINE L1 1708 1903 -4605 4 1872 531 0 0 0 chr1 168809981 168810040 -28385392 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1872 739 229 72 79 chr1 168810081 168810334 -28385098 + L1MCa LINE L1 2057 2307 -4201 4 1872 929 254 33 14 chr1 168810334 168810546 -28384886 - B3 SINE B2 0 216 1 4 1872 739 229 72 79 chr1 168810546 168810596 -28384836 + L1MCa LINE L1 2308 2358 -4150 4 1872 1259 41 0 20 chr1 168810596 168810744 -28384688 + B1_Mus1 SINE Alu 4 148 0 4 1872 267 54 0 0 chr1 168810744 168810781 -28384651 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 4 1872 307 229 127 9 chr1 168810788 168810898 -28384534 + L1MEe LINE L1 2015 2137 -4029 4 1872 383 281 9 17 chr1 168810983 168811099 -28384333 + L1MEe LINE L1 5023 5137 -1009 4 1872 462 248 59 15 chr1 168811119 168811254 -28384178 + L1MC1 LINE L1 6192 6332 -1 4 1872 453 152 0 0 chr1 168811433 168811499 -28383933 - ID4_ SINE ID -16 67 2 4 1872 402 307 21 21 chr1 168811517 168811657 -28383775 - B1F1 SINE Alu -8 141 2 4 1872 342 268 0 76 chr1 168811684 168811789 -28383643 - MIR SINE MIR -142 120 24 4 1872 334 344 65 7 chr1 168812679 168812834 -28382598 - MIRb SINE MIR -71 197 34 4 1872 357 297 0 0 chr1 168813231 168813322 -28382110 - MTE2b LTR MaLR 0 379 289 4 1872 712 294 16 0 chr1 168813350 168813537 -28381895 - MTE2b LTR MaLR -184 195 6 4 1872 976 216 76 38 chr1 168813545 168813809 -28381623 - MTE2b-int LTR MaLR -3 1577 1304 4 1872 320 284 222 45 chr1 168813960 168814226 -28381206 + L2a LINE L2 1814 2126 -1293 4 1872 216 267 118 32 chr1 168814350 168814443 -28380989 - PB1D7 SINE Alu -13 107 7 4 1872 443 263 41 55 chr1 168814670 168814815 -28380617 + RSINE1 SINE B4 21 163 -2 4 1872 465 265 168 0 chr1 168814865 168815061 -28380371 + L2a LINE L2 3198 3426 0 4 1872 655 324 229 20 chr1 168815270 168815758 -28379674 + MLT1E2 LTR MaLR 1 590 -37 4 1872 310 319 97 28 chr1 168816625 168816770 -28378662 + MIRb SINE MIR 7 161 -107 4 1872 187 333 35 62 chr1 168816803 168816947 -28378485 + L2a LINE L2 3192 3331 -95 4 1872 324 229 53 0 chr1 168816951 168817037 -28378395 + MTEb LTR MaLR 250 341 -38 4 1872 1298 283 33 41 chr1 168817063 168817454 -28377978 + MTE-int LTR MaLR 1 388 -1192 4 1872 759 163 0 72 chr1 168817429 168817581 -28377851 - B1_Mur3 SINE Alu 0 149 9 4 1872 410 275 23 70 chr1 168817469 168817598 -28377834 - B4 SINE B4 -88 204 82 4 1872 360 43 0 0 chr1 168817612 168817658 -28377774 + (TGG)n Simple_repeat Simple_repeat 1 46 0 4 1872 220 157 0 73 chr1 168817704 168817759 -28377673 + T-rich Low_complexity Low_complexity 3 53 0 4 1872 2119 189 13 11 chr1 168817795 168818169 -28377263 + RLTR14 LTR ERV1 7 381 -1 4 1872 3486 295 75 31 chr1 168818175 168819316 -28376116 + MTE-int LTR MaLR 389 1579 -1 4 1872 852 332 68 14 chr1 168819316 168819608 -28375824 + MTEb LTR MaLR 65 372 -7 4 1872 266 350 29 7 chr1 168819611 168819749 -28375683 + MIRb SINE MIR 126 266 -2 4 1872 1042 224 74 5 chr1 168820303 168820505 -28374927 + B3 SINE B2 1 216 0 4 29 4088 117 20 2 chr1 168820524 168821125 -28374307 - L1_Mus3 LINE L1 -449 5434 4823 4 1873 8041 72 6 22 chr1 168821123 168822343 -28373089 + L1_Mus3 LINE L1 5434 6638 0 4 1873 1246 266 52 16 chr1 168822426 168822732 -28372700 - MTE2b LTR MaLR -45 334 18 4 1873 226 368 73 0 chr1 168822613 168822749 -28372683 - MT2A LTR ERVL -387 146 1 4 1873 461 250 118 57 chr1 168822790 168823019 -28372413 - MER63D DNA AcHobo -817 244 2 4 1873 321 26 0 0 chr1 168823993 168824031 -28371401 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1873 225 342 40 0 chr1 168824032 168824108 -28371324 - RSINE1 SINE B4 -44 121 43 4 1873 1137 259 86 50 chr1 168825338 168825675 -28369757 + ORR1D2 LTR MaLR 18 366 -4 4 1873 402 85 0 0 chr1 168827449 168827508 -28367924 + (CTATA)n Simple_repeat Simple_repeat 2 60 0 4 1873 189 219 75 45 chr1 168827933 168828000 -28367432 + MIR SINE MIR 29 97 -165 4 1873 1056 235 9 5 chr1 168829039 168829253 -28366179 + B3 SINE B2 1 215 -1 4 1873 697 363 11 15 chr1 168829528 168829791 -28365641 + RMER15 LTR ERVL 299 560 -15 4 1873 459 0 0 0 chr1 168832454 168832505 -28362927 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1873 384 157 284 9 chr1 168832742 168832851 -28362581 + RLTR11A LTR ERVK 1 139 -389 4 1873 210 37 0 0 chr1 168832856 168832883 -28362549 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1873 387 0 0 0 chr1 168832887 168832930 -28362502 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1873 461 219 19 41 chr1 168833161 168833289 -28362143 + RSINE1 SINE B4 5 131 -34 4 1873 555 16 0 0 chr1 168833320 168833384 -28362048 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1873 1255 40 0 0 chr1 168834110 168834258 -28361174 + B1_Mus1 SINE Alu 1 148 0 4 1873 278 67 22 0 chr1 168834260 168834305 -28361127 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 4 1873 4178 260 98 19 chr1 168834315 168835494 -28359938 + Lx8 LINE L1 6202 7473 0 4 1873 210 244 0 0 chr1 168835791 168835836 -28359596 + ID4 SINE ID 13 57 -26 4 1873 233 212 30 0 chr1 168835876 168835942 -28359490 + G-rich Low_complexity Low_complexity 4 71 0 4 1873 338 289 24 24 chr1 168836486 168836610 -28358822 - MER46C DNA MER2_type -138 200 77 4 1873 288 0 0 0 chr1 168836702 168836734 -28358698 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 1873 323 295 28 77 chr1 168837153 168837296 -28358136 - B1F SINE Alu -13 136 1 4 1873 180 0 0 0 chr1 168838099 168838119 -28357313 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1873 315 328 100 40 chr1 168839375 168839575 -28355857 + MLT1L LTR MaLR 39 250 -360 4 1873 1199 288 47 3 chr1 168839714 168840073 -28355359 + MTEa LTR MaLR 1 375 -4 4 1873 568 139 421 6 chr1 168840194 168840353 -28355079 + URR1B DNA MER1_type 1 225 0 4 1873 419 271 93 0 chr1 168841087 168841216 -28354216 - ID_B1 SINE B4 0 224 84 4 1873 572 260 63 6 chr1 168841509 168841683 -28353749 + B4A SINE B4 1 184 -108 4 1873 1434 68 26 0 chr1 168841691 168841881 -28353551 - B2_Mm2 SINE B2 0 195 1 4 1873 263 333 47 34 chr1 168842263 168842412 -28353020 + MER5A DNA MER1_type 28 178 -11 4 1873 36121 35 0 0 chr1 168842592 168848023 -28347409 + L1Md_T LINE L1 62 5589 -297 4 1873 9088 6 3 0 chr1 168848023 168849016 -28346416 + L1Md_T LINE L1 5590 6585 0 4 1873 300 356 50 35 chr1 168849274 168849472 -28345960 - ORR1E LTR MaLR -158 201 1 4 1873 596 236 7 46 chr1 168849598 168849749 -28345683 + B1_Mur2 SINE Alu 5 149 0 4 1873 435 209 17 76 chr1 168849847 168849939 -28345493 + PB1D10 SINE Alu 1 86 -31 4 1873 2245 113 25 0 chr1 168849939 168850258 -28345174 - ORR1A2 LTR MaLR 0 327 1 4 1873 435 209 17 76 chr1 168850258 168850284 -28345148 + PB1D10 SINE Alu 87 112 -5 4 1873 338 346 78 52 chr1 168850293 168850601 -28344831 + MLT1J LTR MaLR 190 505 -7 4 1873 1586 77 0 0 chr1 168850669 168850877 -28344555 - L1_Mus2 LINE L1 0 6566 6359 4 1873 654 144 8 60 chr1 168851566 168851699 -28343733 - URR1A DNA MER1_type -100 126 1 4 1873 745 288 107 19 chr1 168851989 168852251 -28343181 - B4 SINE B4 0 292 8 4 1873 794 107 15 0 chr1 168852260 168852391 -28343041 + (TTTC)n Simple_repeat Simple_repeat 1 133 0 4 1873 1569 278 107 37 chr1 168852577 168853539 -28341893 + L1MB2 LINE L1 5136 6168 -3 4 1873 219 103 0 0 chr1 168853585 168853624 -28341808 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1873 226 333 0 0 chr1 168853838 168853907 -28341525 + CR1_Mam LINE CR1 1429 1497 -707 4 1873 227 259 170 36 chr1 168854962 168855074 -28340358 + L2b LINE L2 3220 3373 -14 4 1873 721 247 140 44 chr1 168855093 168855364 -28340068 + MLT1A0 LTR MaLR 6 302 -63 5 1873 504 0 0 0 chr1 168856825 168856881 -28338551 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1873 251 114 0 22 chr1 168857135 168857180 -28338252 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1873 202 178 67 0 chr1 168857361 168857406 -28338026 + GA-rich Low_complexity Low_complexity 4 51 0 5 1873 289 86 35 0 chr1 168857780 168857838 -28337594 + (TTTTTG)n Simple_repeat Simple_repeat 1 60 0 5 1873 2660 101 0 28 chr1 168857847 168858246 -28337186 - L1_Mus4 LINE L1 -9 6627 6240 5 1873 23 33 0 0 chr1 168858344 168858374 -28337058 + AT_rich Low_complexity Low_complexity 1 30 0 5 1873 454 253 173 60 chr1 168858390 168858609 -28336823 + L1MB7 LINE L1 4942 5193 -953 5 1873 548 283 72 0 chr1 168858609 168858761 -28336671 + RSINE1 SINE B4 3 165 0 5 1873 649 252 153 51 chr1 168858761 168859105 -28336327 + L1MB7 LINE L1 5194 5547 -637 5 1873 225 0 0 0 chr1 168859105 168859130 -28336302 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1873 649 251 144 46 chr1 168859130 168859259 -28336173 + L1MB7 LINE L1 5548 5708 -476 5 1873 455 271 115 18 chr1 168859319 168859537 -28335895 + L1MB7 LINE L1 5893 6131 -53 5 1873 944 232 71 137 chr1 168859716 168859919 -28335513 + MTD LTR MaLR 18 179 -240 5 1873 3663 158 77 11 chr1 168859919 168860553 -28334879 + Lx5 LINE L1 6372 7047 -3 5 1873 944 232 71 137 chr1 168860553 168860759 -28334673 + MTD LTR MaLR 180 400 -19 5 1873 1049 228 46 73 chr1 168860777 168861104 -28334328 + ORR1E LTR MaLR 37 354 -5 5 1873 276 279 15 0 chr1 168861109 168861177 -28334255 + PB1D10 SINE Alu 18 86 -31 5 1873 304 312 0 0 chr1 168861234 168861314 -28334118 + ID4 SINE ID 2 81 -2 5 1873 395 77 56 91 chr1 168861361 168861466 -28333966 + GA-rich Low_complexity Low_complexity 1 97 0 5 1873 1300 11 0 48 chr1 168861466 168861653 -28333779 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 5 1873 395 77 56 91 chr1 168861653 168861690 -28333742 + polypurine Low_complexity Low_complexity 98 138 0 5 1873 240 294 0 0 chr1 168861735 168861888 -28333544 + (TG)n Simple_repeat Simple_repeat 2 154 0 5 1873 457 247 11 11 chr1 168861860 168862036 -28333396 + (TATG)n Simple_repeat Simple_repeat 4 179 0 5 1873 898 251 88 58 chr1 168862780 168863191 -28332241 + RLTR23 LTR ERV1 8 430 0 5 1873 386 248 76 95 chr1 168863376 168863637 -28331795 - L1MD3 LINE L1 -434 7561 7078 5 1873 951 221 59 0 chr1 168863751 168863955 -28331477 + B3 SINE B2 1 216 0 5 1873 941 116 13 52 chr1 168864259 168864413 -28331019 + B1_Mur3 SINE Alu 2 149 0 5 1873 360 336 92 57 chr1 168865129 168865410 -28330022 + B4A SINE B4 2 292 0 5 1873 745 273 143 76 chr1 168865489 168866140 -28329292 + L1MA6 LINE L1 5184 5855 -445 5 1873 447 19 0 0 chr1 168866150 168866202 -28329230 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1873 355 344 16 8 chr1 168866207 168866330 -28329102 - RSINE1 SINE B4 -14 151 28 5 1873 306 279 223 30 chr1 168866362 168866595 -28328837 + L1MA6 LINE L1 5867 6144 -156 5 1873 619 239 44 31 chr1 168866614 168866774 -28328658 + MLT1A0 LTR MaLR 198 359 -6 5 1873 676 304 76 23 chr1 168866784 168867235 -28328197 + L1MB8 LINE L1 5009 5482 -702 5 1873 458 307 102 57 chr1 168867250 168867555 -28327877 + L1MB8 LINE L1 5528 5849 -329 5 1873 1845 170 70 8 chr1 168867555 168867910 -28327522 + ORR1C1 LTR MaLR 2 378 0 5 1873 458 307 102 57 chr1 168867910 168868046 -28327386 + L1MB8 LINE L1 5850 5989 -189 5 1873 3271 53 0 12 chr1 168868066 168868469 -28326963 - MTB LTR MaLR -2 398 1 5 1873 614 231 28 45 chr1 168868674 168868756 -28326676 - L1MA5 LINE L1 -369 5931 5853 5 1873 2883 83 34 0 chr1 168868756 168869164 -28326268 + BGLII_Mus LTR ERVK 1 422 0 5 1873 614 231 28 45 chr1 168869164 168869258 -28326174 - L1MA5 LINE L1 -448 5852 5758 5 1873 622 291 42 33 chr1 168869283 168869496 -28325936 - B4A SINE B4 -61 231 17 5 1873 260 333 28 0 chr1 168869537 168869645 -28325787 - L1MA5 LINE L1 -773 5527 5417 5 1873 2143 120 83 66 chr1 168870152 168870624 -28324808 - IAPLTR2_Mm LTR ERVK -8 467 1 5 1873 242 336 72 14 chr1 168870749 168870890 -28324542 + MIR SINE MIR 72 216 -46 5 1873 888 288 80 41 chr1 168872685 168873175 -28322257 + Lx8 LINE L1 6970 7462 -11 5 1873 230 283 0 0 chr1 168873239 168873292 -28322140 + G-rich Low_complexity Low_complexity 3 55 0 5 1873 225 182 0 0 chr1 168873496 168873551 -28321881 + GA-rich Low_complexity Low_complexity 1 55 0 5 1873 216 0 0 0 chr1 168874431 168874455 -28320977 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1873 1156 119 171 0 chr1 168874540 168874733 -28320699 - URR1A DNA MER1_type 0 226 1 5 1873 313 290 180 57 chr1 168874884 168875078 -28320354 + ID_B1 SINE B4 3 220 -4 5 1873 909 0 0 0 chr1 168875102 168875203 -28320229 + (GGGAGA)n Simple_repeat Simple_repeat 3 103 0 5 1873 308 161 12 0 chr1 168875500 168875581 -28319851 + CT-rich Low_complexity Low_complexity 1 82 0 5 1873 330 67 0 0 chr1 168875606 168875651 -28319781 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1873 22 35 0 0 chr1 168875672 168875701 -28319731 + AT_rich Low_complexity Low_complexity 1 29 0 5 1873 5668 94 23 19 chr1 168876674 168877485 -28317947 - Lx3_Mus LINE L1 -2 7007 6193 5 1873 1861 64 0 4 chr1 168877485 168877720 -28317712 + L1_Mur1 LINE L1 5505 5738 -148 5 1873 613 284 168 44 chr1 168877789 168878195 -28317237 - MLT1K LTR MaLR -114 481 26 5 1873 201 121 0 0 chr1 168879379 168879412 -28316020 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1873 1947 268 68 24 chr1 168879428 168880002 -28315430 + Lx9 LINE L1 6252 6850 -794 5 1873 7693 41 2 0 chr1 168880487 168881404 -28314028 + L1Md_F2 LINE L1 4668 5586 -297 5 1873 8252 44 1 4 chr1 168881404 168882402 -28313030 + L1Md_F2 LINE L1 5587 6581 -1 5 1873 757 278 57 64 chr1 168882427 168882815 -28312617 + Lx9 LINE L1 7225 7609 -35 5 1873 26 50 0 0 chr1 168882824 168882864 -28312568 + AT_rich Low_complexity Low_complexity 1 40 0 5 1873 21 0 0 0 chr1 168882884 168882905 -28312527 + AT_rich Low_complexity Low_complexity 1 21 0 5 1873 569 263 15 0 chr1 168883505 168883642 -28311790 + ORR1E LTR MaLR 3 141 -218 5 1873 438 20 0 0 chr1 168883656 168883707 -28311725 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1873 333 68 0 0 chr1 168884063 168884107 -28311325 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1873 1162 218 122 7 chr1 168884107 168884394 -28311038 + MTD LTR MaLR 86 405 -14 5 1873 719 239 34 101 chr1 168884407 168884644 -28310788 + ORR1E LTR MaLR 137 357 -2 5 1873 285 256 57 12 chr1 168884647 168884778 -28310654 - MIR SINE MIR -67 201 60 5 1873 4463 146 45 6 chr1 168886277 168886986 -28308446 + RMER19A LTR ERVK 1 737 0 5 1873 247 173 19 0 chr1 168887078 168887130 -28308302 - HAL1 LINE L1 -607 1900 1848 5 1873 993 55 0 0 chr1 168887354 168887482 -28307950 + (TC)n Simple_repeat Simple_repeat 2 129 0 5 1873 249 57 0 0 chr1 168887482 168887516 -28307916 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1873 280 276 89 82 chr1 168887529 168887548 -28307884 - ID_B1 SINE B4 -1 223 212 5 1873 222 37 0 0 chr1 168887548 168887575 -28307857 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1873 280 276 89 82 chr1 168887575 168887701 -28307731 - ID_B1 SINE B4 -13 211 77 5 1873 497 224 0 36 chr1 168888196 168888307 -28307125 - PB1D10 SINE Alu -6 111 5 5 1873 261 355 37 26 chr1 168888381 168888572 -28306860 - HAL1 LINE L1 -769 1738 1546 5 1873 296 210 0 16 chr1 168888640 168888703 -28306729 + MER53 DNA hAT 1 62 -131 5 1873 512 293 0 28 chr1 168890656 168890800 -28304632 - B1_Mus2 SINE Alu -7 140 1 5 1873 1684 16 5 10 chr1 168890813 168891007 -28304425 - B2_Mm1a SINE B2 0 193 1 5 1873 273 98 0 0 chr1 168891302 168891343 -28304089 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1873 966 104 7 0 chr1 168891418 168891553 -28303879 + B1_Mus1 SINE Alu 2 137 -11 5 1873 180 77 0 0 chr1 168891553 168891579 -28303853 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1873 420 374 28 42 chr1 168891725 168891940 -28303492 - MIRb SINE MIR 0 268 57 5 1873 357 250 115 0 chr1 168892022 168892126 -28303306 + RSINE1 SINE B4 4 119 -46 5 1873 435 174 0 0 chr1 168892126 168892212 -28303220 + CT-rich Low_complexity Low_complexity 2 87 0 5 1873 432 0 0 0 chr1 168892214 168892262 -28303170 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1873 1213 250 70 0 chr1 168892976 168893276 -28302156 + MTE2b LTR MaLR 58 378 -1 5 1873 1799 198 218 2 chr1 168893834 168894270 -28301162 + MT2A LTR ERVL 1 530 -3 5 1873 290 351 29 36 chr1 168895111 168895250 -28300182 + L2a LINE L2 3288 3425 -1 5 1873 268 242 36 180 chr1 168895527 168895638 -28299794 - PB1D7 SINE Alu -2 118 24 5 1873 767 241 18 41 chr1 168895670 168895891 -28299541 - B3 SINE B2 0 216 1 5 1873 198 0 0 0 chr1 168896086 168896108 -28299324 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1873 468 355 64 91 chr1 168896202 168896499 -28298933 + MER102a DNA MER1_type 33 321 -9 5 1873 387 41 0 0 chr1 168896713 168896762 -28298670 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1873 29 0 0 0 chr1 168898029 168898058 -28297374 + AT_rich Low_complexity Low_complexity 1 29 0 5 1873 471 332 99 67 chr1 168898179 168898624 -28296808 - MLT1H2 LTR MaLR -5 484 26 5 1873 462 346 74 43 chr1 168898632 168898867 -28296565 + MLT1F-int LTR MaLR 935 1175 -314 5 1873 967 95 5 48 chr1 168898867 168899055 -28296377 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1873 462 346 74 43 chr1 168899055 168899142 -28296290 + MLT1F-int LTR MaLR 1176 1266 -223 5 1873 226 255 213 0 chr1 168899184 168899278 -28296154 + MLT1F-int LTR MaLR 1362 1475 -14 5 1873 396 0 0 0 chr1 168899980 168900024 -28295408 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1873 259 354 117 49 chr1 168901199 168901358 -28294074 + MER97c DNA MER1_type? 391 562 -528 5 1873 312 27 0 0 chr1 168901358 168901395 -28294037 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1873 259 354 117 49 chr1 168901395 168901458 -28293974 + MER97c DNA MER1_type? 563 628 -462 5 1873 198 118 0 0 chr1 168901665 168901699 -28293733 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1873 26 0 0 0 chr1 168901935 168901961 -28293471 + AT_rich Low_complexity Low_complexity 1 26 0 5 1873 250 288 34 0 chr1 168901979 168902038 -28293394 - Lx8 LINE L1 -207 7266 7206 5 1873 395 314 7 22 chr1 168902089 168902226 -28293206 - Lx9 LINE L1 -402 7242 7108 5 1873 468 0 0 0 chr1 168902226 168902278 -28293154 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1873 297 308 28 40 chr1 168902287 168902487 -28292945 - Lx3A LINE L1 -409 5888 5655 5 1873 25 31 0 0 chr1 168902650 168902682 -28292750 + AT_rich Low_complexity Low_complexity 1 32 0 5 1873 242 305 75 41 chr1 168902993 168903140 -28292292 - MIRb SINE MIR -20 248 97 5 1873 459 0 0 0 chr1 168903173 168903224 -28292208 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1873 319 361 23 8 chr1 168903283 168903414 -28292018 + MLT1H LTR MaLR 122 254 -194 6 1873 494 300 125 66 chr1 168903511 168903828 -28291604 - MLT2B1 LTR ERVL -27 540 106 6 1873 447 19 0 0 chr1 168903828 168903880 -28291552 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1873 494 286 139 55 chr1 168903880 168903967 -28291465 - MLT2B1 LTR ERVL -415 105 2 6 1873 361 323 181 0 chr1 168904001 168904128 -28291304 + MLT1H LTR MaLR 255 404 -145 6 1873 21 0 0 0 chr1 168904207 168904228 -28291204 + AT_rich Low_complexity Low_complexity 1 21 0 6 1873 214 237 0 0 chr1 168904235 168904273 -28291159 + (CACG)n Simple_repeat Simple_repeat 1 38 0 6 1873 349 277 0 235 chr1 168904448 168904665 -28290767 - MLT1H LTR MaLR -1 548 383 6 1873 1773 233 21 183 chr1 168904928 168905596 -28289836 + RMER15 LTR ERVL 1 560 -15 6 1873 360 0 0 0 chr1 168905686 168905726 -28289706 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1873 477 235 19 19 chr1 168905943 168906047 -28289385 + MLT1C LTR MaLR 11 114 -353 6 1873 353 315 91 71 chr1 168906061 168906259 -28289173 + MLT1C LTR MaLR 185 386 -4 6 1873 635 232 186 0 chr1 168907227 168907404 -28288028 + B3 SINE B2 1 210 -6 6 1873 3768 176 59 0 chr1 168909257 168909377 -28286055 - RMER1B Other Other 0 1066 921 6 1873 216 0 0 0 chr1 168909377 168909401 -28286031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1873 3768 176 59 0 chr1 168909401 168909957 -28285475 - RMER1B Other Other -146 920 351 6 1873 551 27 0 14 chr1 168910067 168910141 -28285291 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 6 1873 306 0 0 0 chr1 168910580 168910614 -28284818 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 1873 757 336 49 34 chr1 168910695 168911021 -28284411 - MER2 DNA MER2_type -1 344 14 6 1873 273 332 99 26 chr1 168911207 168911479 -28283953 + L1MEc LINE L1 638 929 -5471 6 1873 238 156 22 0 chr1 168911601 168911646 -28283786 + L1M4 LINE L1 3496 3541 -2605 6 1873 437 319 99 0 chr1 168911701 168911842 -28283590 + MLT1D LTR MaLR 1 155 -350 6 1873 565 271 121 52 chr1 168911866 168912115 -28283317 + MLT1D LTR MaLR 210 475 -30 6 1873 1101 126 0 0 chr1 168912128 168912303 -28283129 + (TGG)n Simple_repeat Simple_repeat 3 177 0 6 1873 340 248 43 130 chr1 168912311 168912473 -28282959 - B1F SINE Alu -1 148 1 6 1873 264 237 270 0 chr1 168912552 168912704 -28282728 + L1MEc LINE L1 3796 3988 -2331 6 1873 180 231 0 25 chr1 168913124 168913164 -28282268 + MIRb SINE MIR 209 247 -21 6 1873 32 43 0 0 chr1 168913239 168913285 -28282147 + AT_rich Low_complexity Low_complexity 1 46 0 6 1873 1817 242 77 18 chr1 168914522 168914758 -28280674 - MT2A LTR ERVL -11 522 269 6 1873 879 36 0 0 chr1 168914758 168914869 -28280563 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1873 1817 242 77 18 chr1 168914869 168915124 -28280308 - MT2A LTR ERVL -265 268 3 6 1873 227 364 73 55 chr1 168915357 168915575 -28279857 - LTR85b LTR Gypsy? -46 738 517 6 1873 348 61 20 0 chr1 168915662 168915711 -28279721 - HAL1-3A_ME LINE L1 -834 2024 1975 6 1873 654 204 4 0 chr1 168915712 168916194 -28279238 + (TG)n Simple_repeat Simple_repeat 1 484 0 6 1873 324 118 59 0 chr1 168916194 168916245 -28279187 - HAL1-3A_ME LINE L1 -830 2028 1975 6 1873 292 183 21 0 chr1 168916259 168916352 -28279080 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1873 329 125 105 53 chr1 168916352 168916428 -28279004 - HAL1-3A_ME LINE L1 -830 2028 1949 6 1873 372 270 16 102 chr1 168917585 168917713 -28277719 - PB1D7 SINE Alu -1 119 3 6 1873 35659 45 25 15 chr1 168917873 168922446 -28272986 + L1Md_F LINE L1 278 4920 -963 6 1873 226 183 46 77 chr1 168922446 168922511 -28272921 - RMER20A LTR ERVK -268 248 186 6 1873 35659 45 25 15 chr1 168922511 168923165 -28272267 + L1Md_F LINE L1 4921 5586 -297 6 1873 8177 55 0 0 chr1 168923165 168924161 -28271271 + L1Md_T LINE L1 5587 6582 0 6 1873 249 33 0 0 chr1 168924181 168924211 -28271221 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1873 342 347 58 107 chr1 168924377 168924687 -28270745 - L2a LINE L2 0 3426 3081 6 1873 1194 251 38 8 chr1 168925066 168925327 -28270105 + B4A SINE B4 6 274 -18 6 1873 483 118 0 0 chr1 168925331 168925407 -28270025 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1873 413 311 76 22 chr1 168927952 168928136 -28267296 + Tigger12 DNA MER2_type 54 247 -1712 6 1873 557 305 54 15 chr1 168928189 168928392 -28267040 + Tigger12 DNA MER2_type 1717 1927 -32 6 1873 194 368 110 50 chr1 168929129 168929492 -28265940 + L2c LINE L2 2998 3382 -5 6 1873 29 0 0 0 chr1 168930501 168930530 -28264902 + AT_rich Low_complexity Low_complexity 1 29 0 6 1873 186 43 0 0 chr1 168931199 168931222 -28264210 + (CGG)n Simple_repeat Simple_repeat 3 25 0 6 1873 186 87 43 21 chr1 168931640 168931687 -28263745 + (CCGCG)n Simple_repeat Simple_repeat 1 48 0 6 1873 396 0 0 0 chr1 168933336 168933380 -28262052 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1873 1311 109 50 0 chr1 168934615 168934817 -28260615 - L1Md_F2 LINE L1 -1 6581 6370 6 1873 507 214 12 0 chr1 168935087 168935521 -28259911 + (TG)n Simple_repeat Simple_repeat 1 439 0 6 1873 1161 273 70 32 chr1 168935565 168935838 -28259594 - L1_Mur3 LINE L1 -13 5867 5577 6 1873 243 61 0 0 chr1 168935838 168935871 -28259561 + (GTATG)n Simple_repeat Simple_repeat 3 35 0 6 1873 1161 273 70 32 chr1 168935871 168936066 -28259366 - L1_Mur3 LINE L1 -304 5576 5381 6 1873 307 316 27 87 chr1 168937341 168937490 -28257942 - B1F1 SINE Alu -9 140 1 6 1873 457 323 192 18 chr1 168937534 168937868 -28257564 + L2c LINE L2 2488 2879 -540 6 1873 220 360 141 32 chr1 168937950 168938259 -28257173 + L2c LINE L2 3025 3373 -2 6 1873 262 297 97 18 chr1 168939827 168939940 -28255492 - MIRc SINE MIR -144 124 3 6 1873 531 0 0 0 chr1 168940087 168940146 -28255286 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 6 1873 233 222 0 0 chr1 168940544 168940589 -28254843 + MIR SINE MIR 26 70 -138 6 1873 216 0 0 0 chr1 168940715 168940739 -28254693 + (GTGTG)n Simple_repeat Simple_repeat 5 28 0 6 1873 235 307 40 95 chr1 168941333 168941459 -28253973 - MIRb SINE MIR -57 211 93 6 1873 192 323 19 94 chr1 168942599 168942705 -28252727 - MIR SINE MIR -57 151 54 6 1873 231 217 0 0 chr1 168942764 168942810 -28252622 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 6 1873 225 229 0 77 chr1 168942918 168942970 -28252462 + MamSINE1 SINE tRNA 8 55 -235 6 1873 239 225 0 0 chr1 168943209 168943249 -28252183 - MIRb SINE MIR -189 79 40 6 1873 182 252 83 98 chr1 168944230 168944362 -28251070 + L2 LINE L2 63 192 -3227 6 1873 201 176 0 0 chr1 168945100 168945134 -28250298 + A-rich Low_complexity Low_complexity 1 34 0 6 1873 226 268 111 14 chr1 168945953 168946025 -28249407 - L1MEd LINE L1 -5946 173 95 6 1873 308 164 15 0 chr1 168947597 168947664 -28247768 + GA-rich Low_complexity Low_complexity 3 70 0 6 1873 243 313 49 19 chr1 168947679 168947798 -28247634 - MIR SINE MIR -48 220 84 6 1873 763 202 137 29 chr1 168949327 168949531 -28245901 + URR1A DNA MER1_type 1 226 0 6 1873 265 361 46 0 chr1 168950183 168950291 -28245141 - MIRc SINE MIR -64 204 92 6 1873 694 203 137 0 chr1 168951106 168951259 -28244173 - MTEb LTR MaLR 0 379 206 6 1873 764 185 294 74 chr1 168951272 168951579 -28243853 - MTD LTR MaLR -14 405 1 6 1873 774 215 58 34 chr1 168951579 168951780 -28243652 - MTEb LTR MaLR -173 206 1 6 1874 821 89 0 8 chr1 168952577 168952702 -28242730 + (TC)n Simple_repeat Simple_repeat 1 124 0 6 1874 198 226 0 45 chr1 168952708 168952796 -28242636 + CT-rich Low_complexity Low_complexity 3 86 0 6 1874 572 129 10 0 chr1 168953133 168953234 -28242198 + (CA)n Simple_repeat Simple_repeat 2 103 0 6 1874 185 378 95 0 chr1 168953234 168953308 -28242124 - MIR SINE MIR -161 101 21 6 1874 226 240 13 91 chr1 168954684 168954776 -28240656 + MIRb SINE MIR 116 195 -67 6 1874 2538 143 39 7 chr1 168955948 168956356 -28239076 - MTC LTR MaLR 0 421 1 6 1874 254 232 43 0 chr1 168956585 168956654 -28238778 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 6 1874 450 0 0 0 chr1 168956675 168956725 -28238707 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1874 363 314 56 44 chr1 168957057 168957237 -28238195 + L3 LINE CR1 4056 4237 -252 6 1874 464 346 0 0 chr1 168957243 168957396 -28238036 - L2a LINE L2 0 3426 3274 6 1874 304 323 18 173 chr1 168957527 168957752 -28237680 - ORR1E LTR MaLR -66 293 104 6 1874 814 199 56 17 chr1 168957897 168958076 -28237356 - MTE-int LTR MaLR -29 1551 1366 6 1874 1603 153 115 15 chr1 168958077 168958408 -28237024 - ORR1D1 LTR MaLR -10 364 1 6 1874 1518 330 98 70 chr1 168958408 168959645 -28235787 - MTE-int LTR MaLR -201 1169 1 6 1874 265 230 13 26 chr1 168959848 168959924 -28235508 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 6 1874 414 215 60 97 chr1 168960298 168960432 -28235000 + MT2B LTR ERVL 136 264 -337 6 1874 891 78 0 0 chr1 168960325 168960441 -28234991 + B1_Mus1 SINE Alu 7 122 -26 6 1874 626 0 0 13 chr1 168960441 168960516 -28234916 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 6 1874 207 186 0 0 chr1 168960550 168960593 -28234839 + CT-rich Low_complexity Low_complexity 2 44 0 6 1874 483 48 0 0 chr1 168960609 168960671 -28234761 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1874 419 167 13 13 chr1 168960671 168960750 -28234682 - B1_Mur1 SINE Alu -11 138 60 6 1874 261 297 93 40 chr1 168961470 168961621 -28233811 - MER117 DNA MER1_type -37 160 2 6 1874 234 0 0 0 chr1 168962832 168962858 -28232574 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1874 414 0 0 0 chr1 168962858 168962903 -28232529 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1874 188 250 23 0 chr1 168964253 168964297 -28231135 + MIRb SINE MIR 43 87 -181 6 1874 760 219 7 0 chr1 168966103 168966249 -28229183 - B1_Mur1 SINE Alu -2 147 1 6 1874 573 251 144 21 chr1 168967240 168967427 -28228005 - MER20 DNA MER1_type 0 219 10 6 1874 303 222 0 0 chr1 168967497 168967578 -28227854 + CT-rich Low_complexity Low_complexity 1 81 0 6 1874 504 0 0 0 chr1 168969824 168969880 -28225552 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 6 1874 218 297 266 11 chr1 168970378 168970555 -28224877 - MIRc SINE MIR -36 232 11 6 1874 560 266 8 0 chr1 168970690 168970818 -28224614 + MIR SINE MIR 33 161 -101 6 1874 211 247 195 61 chr1 168970860 168971024 -28224408 + L2a LINE L2 2911 3096 -330 6 1874 696 202 86 31 chr1 168971028 168971191 -28224241 - MTD LTR MaLR 0 419 248 6 1874 1152 207 214 30 chr1 168971683 168972076 -28223356 - RMER4B LTR ERVK -120 465 1 6 1874 439 322 93 31 chr1 168972146 168972373 -28223059 + MIR SINE MIR 22 266 -2 6 1874 197 242 59 0 chr1 168972460 168972531 -28222901 - L2c LINE L2 -232 3155 3080 7 1874 290 159 14 0 chr1 168973352 168973421 -28222011 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 7 1874 201 401 66 33 chr1 168973996 168974148 -28221284 - MIRb SINE MIR -56 212 56 7 1874 246 317 104 47 chr1 168974877 168975040 -28220392 + MIRb SINE MIR 92 262 0 7 1874 282 388 71 29 chr1 168975146 168975316 -28220116 + MER115 DNA Tip100 143 319 -374 7 1874 206 32 32 0 chr1 168975877 168975908 -28219524 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1874 248 254 134 30 chr1 168976324 168976458 -28218974 + MIRb SINE MIR 105 252 -16 7 1874 525 16 0 0 chr1 168977680 168977742 -28217690 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1874 720 35 0 0 chr1 168977742 168977828 -28217604 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1874 182 368 52 10 chr1 168977836 168977932 -28217500 + MIRc SINE MIR 51 150 -118 7 1874 495 293 146 22 chr1 168977960 168978145 -28217287 - MER58A DNA MER1_type -16 208 1 7 1874 203 339 0 0 chr1 168980289 168980345 -28215087 - MIR SINE MIR -62 146 91 7 1874 196 274 44 97 chr1 168980745 168980858 -28214574 + L2 LINE L2 646 752 -2667 7 1874 211 287 198 21 chr1 168980858 168980954 -28214478 + L2a LINE L2 3276 3388 -38 7 1874 276 373 6 6 chr1 168981039 168981209 -28214223 + (CTATT)n Simple_repeat Simple_repeat 5 174 0 7 1874 980 208 61 73 chr1 168981380 168981723 -28213709 + Lx9 LINE L1 7306 7644 0 7 1874 224 264 140 4 chr1 168982395 168982489 -28212943 + MIRc SINE MIR 62 169 -107 7 1874 460 267 92 56 chr1 168982865 168983043 -28212389 + B4 SINE B4 92 290 -2 7 1874 353 299 35 114 chr1 168984066 168984293 -28211139 + MIRb SINE MIR 39 247 -21 7 1874 781 273 70 91 chr1 168985945 168986243 -28209189 + B4A SINE B4 1 292 0 7 1874 1193 180 34 0 chr1 168986254 168986460 -28208972 - URR1B DNA MER1_type 0 225 13 7 1874 227 226 91 45 chr1 168987383 168987471 -28207961 - MIRc SINE MIR -101 167 76 7 1874 240 35 0 0 chr1 168988129 168988158 -28207274 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1874 432 91 0 0 chr1 168988968 168989034 -28206398 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1874 444 37 0 0 chr1 168989088 168989142 -28206290 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1874 334 319 53 0 chr1 168989285 168989379 -28206053 - B4A SINE B4 -58 234 136 7 1874 250 288 71 48 chr1 168989438 168989522 -28205910 - Tigger5 DNA MER2_type -30 2376 2291 7 1874 551 286 72 30 chr1 168989564 168989730 -28205702 - Tigger5 DNA MER2_type -2233 173 1 7 1874 423 0 0 0 chr1 168991122 168991169 -28204263 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1874 318 208 0 89 chr1 168991173 168991252 -28204180 - ID4_ SINE ID -11 72 1 7 1874 331 296 31 0 chr1 168991281 168991379 -28204053 + Lx8 LINE L1 7252 7352 -121 7 1874 240 269 267 7 chr1 168991597 168991743 -28203689 + MIRb SINE MIR 16 199 -69 7 1874 836 237 38 0 chr1 168991776 168991962 -28203470 + B3A SINE B2 2 194 -4 7 1874 271 298 74 11 chr1 168992025 168992120 -28203312 + Helitron3Na_Mam RC Helitron 51 151 -335 7 1874 290 361 39 61 chr1 168992762 168992942 -28202490 + MIRb SINE MIR 13 188 -80 7 1874 248 326 182 33 chr1 168993272 168993453 -28201979 + MIRb SINE MIR 36 247 -21 7 1874 221 314 115 29 chr1 168995072 168995246 -28200186 - L2b LINE L2 -366 3053 2865 7 1874 316 317 110 7 chr1 168995480 168995626 -28199806 - MIRb SINE MIR -93 175 15 7 1874 242 263 112 24 chr1 168997366 168997524 -28197908 + MIRb SINE MIR 11 188 -80 7 1874 282 116 0 0 chr1 168998792 168998835 -28196597 + (GGA)n Simple_repeat Simple_repeat 2 44 0 7 1874 426 79 0 0 chr1 168999439 168999502 -28195930 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1874 273 298 46 76 chr1 169001250 169001381 -28194051 + MamRep38 DNA hAT 54 180 -115 1 1874 210 284 55 33 chr1 169001524 169001615 -28193817 + MIRb SINE MIR 15 107 -161 2 1874 704 21 0 1 chr1 169002088 169002171 -28193261 + L1_Mm LINE L1 4758 4862 -1281 3 1874 5463 32 0 0 chr1 169002171 169002799 -28192633 + L1Md_T LINE L1 5955 6582 0 4 1874 414 242 0 40 chr1 169002799 169002814 -28192618 + L1_Mm LINE L1 4863 4875 -1268 3 1874 201 273 109 0 chr1 169002822 169002877 -28192555 - MIRm SINE MIR -123 153 93 5 1874 618 255 47 34 chr1 169003350 169003515 -28191917 + ID_B1 SINE B4 81 250 -42 6 1874 28 48 0 0 chr1 169004223 169004265 -28191167 + AT_rich Low_complexity Low_complexity 1 42 0 7 1874 222 346 110 72 chr1 169004646 169005218 -28190214 - L2 LINE L2 -420 2999 2406 8 1874 631 83 9 9 chr1 169006303 169006412 -28189020 + (TG)n Simple_repeat Simple_repeat 1 109 0 9 1874 537 133 0 0 chr1 169006455 169006553 -28188879 + (TG)n Simple_repeat Simple_repeat 2 99 0 9 1874 357 121 108 21 chr1 169006569 169006662 -28188770 + Lx9 LINE L1 7533 7633 -11 1 1874 411 38 0 0 chr1 169006662 169006715 -28188717 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1874 647 246 21 0 chr1 169006730 169006872 -28188560 + B1_Mur2 SINE Alu 4 148 -1 1 1874 246 358 44 50 chr1 169007610 169007769 -28187663 + MIRb SINE MIR 4 161 -107 1 1874 240 277 0 92 chr1 169011029 169011160 -28184272 + MLT1-int LTR MaLR 1163 1281 -90 1 1874 206 344 143 32 chr1 169011970 169012096 -28183336 - MIR3 SINE MIR -36 172 33 1 1874 567 291 49 58 chr1 169012525 169012751 -28182681 - MIRc SINE MIR -39 229 6 1 1874 581 101 10 0 chr1 169013272 169013371 -28182061 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1874 371 193 12 0 chr1 169014183 169014266 -28181166 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1874 189 0 0 0 chr1 169014763 169014784 -28180648 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1874 337 294 137 68 chr1 169014964 169015110 -28180322 - MER96 DNA hAT -1 174 19 2 1874 26 0 0 0 chr1 169015643 169015669 -28179763 + AT_rich Low_complexity Low_complexity 1 26 0 2 1874 522 0 0 0 chr1 169015983 169016041 -28179391 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1874 1101 241 42 18 chr1 169017132 169017415 -28178017 + B4A SINE B4 1 290 -2 2 1874 218 261 0 0 chr1 169017418 169017464 -28177968 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1874 214 195 0 0 chr1 169018771 169018812 -28176620 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 1874 251 307 104 49 chr1 169019225 169019369 -28176063 + MER5B DNA MER1_type 21 172 -6 2 1874 414 0 0 0 chr1 169019928 169019974 -28175458 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1874 528 223 0 59 chr1 169021204 169021323 -28174109 + B3A SINE B2 1 112 -86 2 1874 965 286 39 25 chr1 169021679 169022038 -28173394 - MLT1A0 LTR MaLR -1 364 1 2 1874 198 191 0 0 chr1 169022563 169022605 -28172827 + CT-rich Low_complexity Low_complexity 1 42 0 3 1874 438 79 0 0 chr1 169022928 169022991 -28172441 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1874 184 260 138 38 chr1 169024334 169024414 -28171018 - MIRb SINE MIR -116 152 65 3 1874 756 52 0 0 chr1 169025300 169025397 -28170035 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 1874 2703 49 52 0 chr1 169026966 169027295 -28168137 + ORR1A1 LTR MaLR 1 346 0 3 1874 1946 179 53 80 chr1 169027605 169028041 -28167391 + RLTR23 LTR ERV1 7 430 0 3 1874 311 363 146 22 chr1 169029334 169029602 -28165830 - MTE2a-int LTR MaLR -1268 312 12 3 1874 276 253 13 26 chr1 169029625 169029702 -28165730 - MTE2a LTR MaLR -14 365 290 3 1874 711 156 253 16 chr1 169029890 169030072 -28165360 - URR1B DNA MER1_type 0 225 1 3 1874 346 356 70 22 chr1 169031839 169032066 -28163366 + MER44A DNA MER2_type 1 238 -101 3 1874 205 224 20 0 chr1 169032066 169032115 -28163317 + (TATG)n Simple_repeat Simple_repeat 4 53 0 3 1874 381 252 116 20 chr1 169032238 169032384 -28163048 + L2a LINE L2 3082 3241 -185 4 1874 212 171 0 24 chr1 169034096 169034138 -28161294 + CT-rich Low_complexity Low_complexity 1 41 0 4 1874 706 262 35 51 chr1 169034352 169034549 -28160883 - B3A SINE B2 0 198 5 4 1874 342 0 0 0 chr1 169034561 169034599 -28160833 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1874 372 253 0 0 chr1 169034614 169034689 -28160743 - B1_Mur2 SINE Alu -51 98 24 4 1874 441 0 0 0 chr1 169035742 169035791 -28159641 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1874 193 315 33 33 chr1 169035805 169035897 -28159535 - MER5A DNA MER1_type -48 141 50 4 1874 259 297 55 103 chr1 169035948 169036113 -28159319 - MER5A DNA MER1_type -26 163 7 4 1874 188 288 91 0 chr1 169036461 169036527 -28158905 - L2c LINE L2 -73 3314 3243 4 1874 198 375 22 22 chr1 169037203 169037293 -28158139 + MIRm SINE MIR 172 261 -15 4 1874 473 276 83 53 chr1 169037552 169037816 -28157616 - B4 SINE B4 -19 273 2 4 1874 649 184 87 14 chr1 169037872 169038010 -28157422 - B1_Mur1 SINE Alu -1 148 1 5 1874 332 279 0 44 chr1 169038023 169038113 -28157319 - B4A SINE B4 -205 87 2 5 1874 858 230 192 71 chr1 169038539 169038862 -28156570 + MTEb LTR MaLR 18 379 0 5 1874 381 299 76 41 chr1 169039301 169039472 -28155960 + MER97c DNA MER1_type? 1 177 -913 5 1874 492 208 0 0 chr1 169040033 169040139 -28155293 + CT-rich Low_complexity Low_complexity 1 106 0 5 1874 446 351 27 31 chr1 169040180 169040436 -28154996 + L3 LINE CR1 4145 4399 -90 5 1874 257 167 0 40 chr1 169041378 169041428 -28154004 - PB1D7 SINE Alu -59 61 14 5 1874 229 306 31 31 chr1 169041473 169041537 -28153895 + B4A SINE B4 82 145 -147 5 1874 403 280 9 36 chr1 169041480 169041581 -28153851 + PB1D10 SINE Alu 6 105 -12 5 1874 231 36 0 0 chr1 169041581 169041609 -28153823 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 5 1874 1068 299 35 78 chr1 169041898 169042294 -28153138 - MTE2a LTR MaLR 0 379 1 6 1874 582 86 0 0 chr1 169042929 169043010 -28152422 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1874 8541 45 1 2 chr1 169043347 169044402 -28151030 + L1Md_F3 LINE L1 5518 6573 -11 6 1874 240 111 0 0 chr1 169044425 169044461 -28150971 + (GAA)n Simple_repeat Simple_repeat 2 37 0 6 1874 477 0 0 0 chr1 169045095 169045148 -28150284 + (TAAAA)n Simple_repeat Simple_repeat 5 57 0 6 1874 369 329 118 89 chr1 169046108 169046280 -28149152 + B4 SINE B4 1 165 -127 6 1874 195 42 0 0 chr1 169046280 169046304 -28149128 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 6 1874 369 329 118 89 chr1 169046304 169046411 -28149021 + B4 SINE B4 166 287 -5 6 1874 443 202 11 33 chr1 169046476 169046660 -28148772 + (CATA)n Simple_repeat Simple_repeat 1 180 0 6 1874 296 259 123 3 chr1 169046690 169046782 -28148650 + ID4 SINE ID 4 103 -49 6 1874 240 35 0 0 chr1 169047161 169047190 -28148242 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 6 1874 356 59 29 29 chr1 169047801 169047871 -28147561 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 7 1874 33 66 0 0 chr1 169047881 169047942 -28147490 + AT_rich Low_complexity Low_complexity 1 61 0 7 1874 1385 235 96 26 chr1 169048234 169048623 -28146809 - MTD LTR MaLR -20 399 1 7 1874 186 289 89 24 chr1 169049544 169049668 -28145764 + L2b LINE L2 3113 3244 -131 7 1874 215 132 26 0 chr1 169049982 169050020 -28145412 + PB1D7 SINE Alu 19 57 -63 7 1874 323 348 28 67 chr1 169050108 169050311 -28145121 + MLT1F LTR MaLR 127 319 -260 7 1874 713 304 18 22 chr1 169050374 169050603 -28144829 - RMER15 LTR ERVL -49 526 299 7 1874 498 17 0 0 chr1 169050677 169050736 -28144696 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1874 311 237 74 115 chr1 169051071 169051219 -28144213 + MT2B2 LTR ERVL 123 264 -320 7 1874 885 154 0 32 chr1 169051101 169051255 -28144177 + B1_Mur2 SINE Alu 1 149 0 7 1874 405 297 28 112 chr1 169051255 169051270 -28144162 + B4 SINE B4 130 239 -53 8 1874 214 200 20 50 chr1 169051714 169051814 -28143618 + CT-rich Low_complexity Low_complexity 1 97 0 8 1874 240 35 0 0 chr1 169051962 169051991 -28143441 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1874 1583 271 56 7 chr1 169052837 169053287 -28142145 - Lx8 LINE L1 -776 6697 6226 8 1874 207 69 0 0 chr1 169053338 169053367 -28142065 + (TATTG)n Simple_repeat Simple_repeat 4 32 0 8 1874 571 233 175 18 chr1 169053370 169053536 -28141896 - B3 SINE B2 -24 192 1 8 1874 21 36 0 0 chr1 169053543 169053571 -28141861 + AT_rich Low_complexity Low_complexity 1 28 0 8 1874 1163 329 75 29 chr1 169053708 169054390 -28141042 + Lx8 LINE L1 6713 7425 -48 8 1874 1268 157 5 0 chr1 169055276 169055480 -28139952 + ORR1B1 LTR MaLR 1 205 -189 8 1874 467 158 0 0 chr1 169055474 169055550 -28139882 + ORR1B1 LTR MaLR 311 386 -8 8 1874 3409 217 92 50 chr1 169056319 169057534 -28137898 + RMER1A Other Other 2 892 -138 8 1874 333 0 0 0 chr1 169057534 169057571 -28137861 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1874 3409 158 112 47 chr1 169057571 169057656 -28137776 + RMER1A Other Other 893 1021 -9 8 1874 320 294 154 39 chr1 169057643 169058178 -28137254 + L1MEf LINE L1 1507 2157 -4085 9 1874 1680 251 41 8 chr1 169058370 169058885 -28136547 + L1MEf LINE L1 2392 2923 -3223 9 1874 2913 107 30 5 chr1 169058959 169059391 -28136041 + Lx LINE L1 6205 6647 -7 9 1874 1184 48 14 0 chr1 169059419 169059564 -28135868 + B1_Mm SINE Alu 1 147 0 9 1874 618 26 0 0 chr1 169059704 169059780 -28135652 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 9 1874 372 249 169 6 chr1 169059782 169059948 -28135484 + MER2 DNA MER2_type 82 274 -71 9 1874 444 203 58 17 chr1 169059970 169060090 -28135342 + MER2 DNA MER2_type 163 287 -58 9 1874 269 304 29 0 chr1 169060290 169060359 -28135073 + ID4_ SINE ID 2 72 -11 9 1874 218 191 0 0 chr1 169060483 169060530 -28134902 + (TTG)n Simple_repeat Simple_repeat 2 48 0 9 1874 570 225 9 0 chr1 169060530 169060641 -28134791 + B3 SINE B2 37 148 -68 9 1874 785 138 0 0 chr1 169060758 169060881 -28134551 + B1_Mur2 SINE Alu 25 147 -2 9 1874 296 236 57 99 chr1 169060759 169060900 -28134532 + B4A SINE B4 111 245 -47 1 1874 1219 301 175 8 chr1 169060906 169061512 -28133920 + Lx8 LINE L1 6566 7272 -201 1 1874 201 254 0 0 chr1 169061542 169061597 -28133835 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1874 1046 257 125 59 chr1 169061736 169062422 -28133010 + L1M2 LINE L1 4727 5467 -833 1 1874 180 0 0 0 chr1 169062548 169062568 -28132864 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1874 234 294 29 0 chr1 169062769 169062837 -28132595 - ID4_ SINE ID -4 79 10 1 1874 632 284 82 43 chr1 169063146 169063426 -28132006 - B4A SINE B4 0 292 2 1 1874 1038 240 47 12 chr1 169063971 169064224 -28131208 + Lx5 LINE L1 6788 7049 -1 1 1874 298 301 0 0 chr1 169064640 169064723 -28130709 + G-rich Low_complexity Low_complexity 1 83 0 1 1874 452 0 52 0 chr1 169065253 169065311 -28130121 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 1 1874 190 106 21 21 chr1 169065377 169065425 -28130007 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 1 1874 198 0 0 0 chr1 169065447 169065469 -28129963 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1874 363 23 0 0 chr1 169065728 169065772 -28129660 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1874 351 0 0 0 chr1 169065814 169065853 -28129579 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1874 447 241 45 57 chr1 169066025 169066201 -28129231 + MIRc SINE MIR 19 192 -76 1 1874 999 224 10 10 chr1 169066312 169066519 -28128913 + B3 SINE B2 4 210 -6 1 1874 414 256 43 31 chr1 169067021 169067182 -28128250 - MER104 DNA Tc2 -6 175 13 1 1874 2366 80 3 58 chr1 169067575 169067921 -28127511 + ORR1A2 LTR MaLR 1 327 0 1 1874 207 272 28 71 chr1 169068121 169068303 -28127129 + T-rich Low_complexity Low_complexity 2 175 0 1 1874 1095 63 21 0 chr1 169068333 169068475 -28126957 - B1_Mm SINE Alu -1 146 2 1 1874 859 262 24 0 chr1 169068615 169068821 -28126611 - B3 SINE B2 -5 211 1 1 1874 314 307 0 17 chr1 169068892 169069064 -28126368 + CT-rich Low_complexity Low_complexity 1 169 0 1 1874 393 198 0 0 chr1 169069236 169069327 -28126105 + CT-rich Low_complexity Low_complexity 2 92 0 1 1874 2981 113 2 36 chr1 169069621 169070152 -28125280 - RLTR1C LTR ERV1 0 605 1 1 1874 556 326 78 47 chr1 169070244 169071188 -28124244 + L1M2 LINE L1 1833 2806 -4043 1 1874 3296 50 8 0 chr1 169073497 169073894 -28121538 - MTB LTR MaLR 0 400 1 1 1874 240 211 92 0 chr1 169073926 169074002 -28121430 + L1_Mur1 LINE L1 2077 2159 -3727 1 1874 234 91 0 0 chr1 169074727 169074760 -28120672 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 1 1874 1903 34 0 33 chr1 169074824 169075064 -28120368 + L1Md_F3 LINE L1 6338 6569 -15 1 1874 221 0 0 33 chr1 169075068 169075098 -28120334 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1874 588 283 19 14 chr1 169075215 169075423 -28120009 - RMER15 LTR ERVL -7 568 360 1 1874 414 129 10 31 chr1 169075691 169075787 -28119645 + GA-rich Low_complexity Low_complexity 1 94 0 1 1874 345 286 132 35 chr1 169076214 169076388 -28119044 + B3A SINE B2 2 192 -6 1 1874 986 269 77 71 chr1 169076421 169076564 -28118868 + L1_Rod LINE L1 1951 2086 -3794 1 1874 390 74 0 0 chr1 169076564 169076618 -28118814 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1 1874 1087 252 35 67 chr1 169076618 169076994 -28118438 + L1_Rod LINE L1 2087 2493 -3354 1 1874 3491 131 67 5 chr1 169077029 169077611 -28117821 - RMER13A LTR ERVK -242 618 1 1 1874 599 236 68 9 chr1 169077626 169077848 -28117584 + L1_Rod LINE L1 2481 2715 -3165 1 1874 434 257 92 7 chr1 169077853 169077994 -28117438 + L1_Rod LINE L1 2874 3026 -2821 1 1874 772 181 2 147 chr1 169078024 169078133 -28117299 + B3 SINE B2 58 162 -54 1 1874 1990 86 119 3 chr1 169078133 169078426 -28117006 - ORR1A2 LTR MaLR 0 327 1 1 1874 772 188 7 39 chr1 169078426 169078483 -28116949 + B3 SINE B2 163 215 -1 1 1874 234 300 130 34 chr1 169080050 169080257 -28115175 + MIR SINE MIR 16 242 -26 1 1874 279 0 0 0 chr1 169080393 169080424 -28115008 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1874 2316 192 17 10 chr1 169080468 169080948 -28114484 - MT2A LTR ERVL -40 561 1 1 1874 702 320 28 35 chr1 169081037 169081325 -28114107 - B4A SINE B4 -4 288 3 1 1874 847 261 9 40 chr1 169081373 169081597 -28113835 - ID_B1 SINE B4 -1 223 7 1 1874 637 264 0 7 chr1 169081834 169081979 -28113453 + RSINE1 SINE B4 3 146 -19 1 1874 1184 50 0 0 chr1 169082006 169082146 -28113286 - B1_Mus2 SINE Alu -6 141 2 1 1875 1050 95 0 69 chr1 169082898 169083057 -28112375 + B1_Mus1 SINE Alu 1 148 0 1 1875 252 0 0 0 chr1 169083061 169083089 -28112343 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1875 193 254 44 15 chr1 169083739 169083807 -28111625 - L2 LINE L2 -978 2441 2372 1 1875 306 246 118 8 chr1 169083821 169083940 -28111492 + L1MB1 LINE L1 6036 6167 -1 1 1875 733 274 98 0 chr1 169084688 169084795 -28110637 - L1M2 LINE L1 -1371 4772 4660 1 1875 2054 164 91 23 chr1 169084795 169085145 -28110287 + MTC LTR MaLR 1 378 -43 1 1875 254 29 0 28 chr1 169085145 169085181 -28110251 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 1 1875 2054 164 91 23 chr1 169085181 169085224 -28110208 + MTC LTR MaLR 379 421 0 1 1875 733 274 98 0 chr1 169085224 169085390 -28110042 - L1M2 LINE L1 -1484 4659 4473 1 1875 1938 296 93 8 chr1 169085390 169085942 -28109490 + L1MA6 LINE L1 5317 5915 -385 1 1875 321 89 0 0 chr1 169085942 169085987 -28109445 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1875 1938 296 93 8 chr1 169085987 169086295 -28109137 + L1MA6 LINE L1 5916 6249 -51 1 1875 645 194 90 0 chr1 169086301 169086435 -28108997 + B1F2 SINE Alu 4 149 0 1 1875 328 200 106 39 chr1 169086494 169086598 -28108834 - L1MC4 LINE L1 -751 7291 7181 1 1875 661 191 0 0 chr1 169087061 169087176 -28108256 - B3 SINE B2 -99 117 3 1 1875 972 223 65 15 chr1 169087297 169087557 -28107875 + MTD LTR MaLR 1 273 -146 1 1875 4369 252 41 101 chr1 169087558 169089025 -28106407 + Lx5 LINE L1 5654 7032 -18 1 1875 1483 68 16 5 chr1 169089096 169089288 -28106144 + B2_Mm2 SINE B2 2 195 0 1 1875 296 329 45 13 chr1 169089290 169089447 -28105985 + L1MA5A LINE L1 5776 5937 -360 1 1875 639 297 127 33 chr1 169090187 169090401 -28105031 + B4A SINE B4 26 265 -27 1 1875 315 0 0 0 chr1 169090401 169090436 -28104996 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1875 639 297 127 33 chr1 169090436 169090465 -28104967 + B4A SINE B4 266 292 0 1 1875 583 266 92 42 chr1 169090485 169090768 -28104664 - MER45R DNA Tip100 -84 1497 1201 1 1875 1111 270 90 112 chr1 169090991 169091454 -28103978 - L1MA4 LINE L1 -278 6022 5522 1 1875 603 230 43 7 chr1 169091454 169091594 -28103838 + RSINE1 SINE B4 2 146 -19 1 1875 1111 270 90 112 chr1 169091594 169091785 -28103647 - L1MA4 LINE L1 -779 5521 5382 1 1875 1465 296 47 10 chr1 169091787 169092296 -28103136 - MER45R DNA Tip100 -331 1250 723 1 1875 495 248 122 14 chr1 169092303 169092450 -28102982 + B4A SINE B4 116 278 -14 1 1875 271 243 14 0 chr1 169092469 169092543 -28102889 + MER45R DNA Tip100 107 181 -1400 1 1875 445 229 10 10 chr1 169092582 169092679 -28102753 - B4A SINE B4 -195 97 1 1 1875 319 268 35 9 chr1 169092679 169092792 -28102640 - MER45R DNA Tip100 -1465 116 1 1 1875 744 107 0 0 chr1 169094081 169094193 -28101239 + (GGA)n Simple_repeat Simple_repeat 3 114 0 1 1875 850 203 24 44 chr1 169094284 169094405 -28101027 - RCHARR1 DNA MER1_type -3 971 858 1 1875 5682 93 40 7 chr1 169094405 169095238 -28100194 + Lx2A1 LINE L1 6149 7008 0 1 1875 850 203 24 44 chr1 169095238 169095366 -28100066 - RCHARR1 DNA MER1_type -117 857 727 1 1875 253 255 140 20 chr1 169095366 169095466 -28099966 + B3A SINE B2 2 113 -85 1 1875 387 0 0 0 chr1 169095504 169095547 -28099885 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1875 238 327 9 56 chr1 169095557 169095664 -28099768 + Lx8 LINE L1 7225 7326 -147 1 1875 695 173 71 36 chr1 169095666 169095834 -28099598 - B2_Mm2 SINE B2 -7 188 15 1 1875 225 0 0 0 chr1 169095934 169095959 -28099473 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 1875 54 90 0 0 chr1 169095970 169096115 -28099317 + AT_rich Low_complexity Low_complexity 1 145 0 1 1875 236 191 0 73 chr1 169096150 169096218 -28099214 - RCHARR1 DNA MER1_type -233 741 679 1 1875 439 296 242 10 chr1 169096207 169096619 -28098813 - RCHARR1 DNA MER1_type -442 532 25 1 1875 393 301 52 0 chr1 169096735 169096888 -28098544 + L1MA4A LINE L1 4582 4742 -1401 1 1875 507 196 0 0 chr1 169096894 169096986 -28098446 + B1F2 SINE Alu 52 143 -6 1 1875 250 298 106 73 chr1 169097042 169097288 -28098144 + L1MA4A LINE L1 5792 6045 -258 1 1875 523 256 111 28 chr1 169097373 169097640 -28097792 + L1_Mur3 LINE L1 5177 5480 -704 1 1875 779 139 8 0 chr1 169097735 169097857 -28097575 + B1_Mus2 SINE Alu 24 146 -1 1 1875 252 276 158 0 chr1 169097921 169097997 -28097435 + ID_B1 SINE B4 129 216 -8 1 1875 436 331 78 8 chr1 169098173 169098441 -28096991 - L3 LINE CR1 -1430 3059 2773 1 1875 811 245 19 10 chr1 169098680 169098886 -28096546 + ID_B1 SINE B4 17 224 0 1 1875 866 243 226 12 chr1 169098896 169099237 -28096195 - MTD LTR MaLR -5 414 1 1 1875 258 311 9 62 chr1 169099603 169099716 -28095716 - MLT1B LTR MaLR -2 388 282 1 1875 346 286 45 0 chr1 169099952 169100064 -28095368 + PB1D10 SINE Alu 1 117 0 1 1875 198 0 0 0 chr1 169100068 169100090 -28095342 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1875 521 275 89 11 chr1 169101145 169101386 -28094046 - MIR SINE MIR 0 262 4 1 1875 280 0 50 0 chr1 169101435 169101475 -28093957 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1875 340 238 0 35 chr1 169101519 169101606 -28093826 + RSINE1 SINE B4 10 93 -72 1 1875 21 36 0 0 chr1 169101659 169101687 -28093745 + AT_rich Low_complexity Low_complexity 1 28 0 1 1875 274 200 28 14 chr1 169101707 169101778 -28093654 - Lx9 LINE L1 -4 7640 7569 1 1875 713 217 14 14 chr1 169101909 169102054 -28093378 + B1_Mur2 SINE Alu 5 149 0 1 1875 973 244 47 22 chr1 169103493 169103770 -28091662 + MTE2b LTR MaLR 57 340 -39 1 1875 2379 95 0 35 chr1 169103993 169104332 -28091100 + ORR1A2 LTR MaLR 1 327 0 1 1875 549 232 49 52 chr1 169105212 169105400 -28090032 + B3A SINE B2 10 192 -3 1 1875 1144 68 0 0 chr1 169105403 169105550 -28089882 + B1_Mm SINE Alu 1 147 0 1 1875 275 282 0 93 chr1 169106028 169106157 -28089275 - PB1D10 SINE Alu 0 117 1 2 1875 213 224 0 0 chr1 169106412 169106470 -28088962 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1875 246 312 97 0 chr1 169106703 169106796 -28088636 + LTR84b LTR ERVL 315 416 -345 2 1875 333 200 211 39 chr1 169107495 169107599 -28087833 + MTEa LTR MaLR 206 327 -52 2 1875 335 277 58 51 chr1 169107680 169107817 -28087615 - MIRb SINE MIR 0 262 125 2 1875 200 221 0 13 chr1 169107877 169107955 -28087477 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1875 403 273 8 40 chr1 169107960 169108086 -28087346 - PB1 SINE Alu -5 122 1 2 1875 1417 55 5 16 chr1 169108115 169108301 -28087131 + B2_Mm1a SINE B2 3 186 -7 2 1875 205 86 29 0 chr1 169108861 169108896 -28086536 + (CACCC)n Simple_repeat Simple_repeat 2 37 0 2 1875 338 275 149 45 chr1 169109221 169109495 -28085937 + B4 SINE B4 2 276 -16 2 1875 1272 93 22 0 chr1 169109527 169109556 -28085876 - B2_Mm2 SINE B2 -8 187 155 2 1875 266 0 0 29 chr1 169109556 169109591 -28085841 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1875 1272 93 22 0 chr1 169109591 169109743 -28085689 - B2_Mm2 SINE B2 -41 154 3 2 1875 186 298 53 0 chr1 169110210 169110267 -28085165 - L2c LINE L2 -24 3363 3304 2 1875 228 319 135 47 chr1 169110408 169110556 -28084876 + MLT1I LTR MaLR 21 181 -230 2 1875 2585 71 3 0 chr1 169110970 169111296 -28084136 + ORR1A2 LTR MaLR 1 327 0 2 1875 417 250 92 64 chr1 169111427 169111645 -28083787 - Tigger12c DNA MER2_type -215 519 296 2 1875 827 161 21 0 chr1 169112097 169112240 -28083192 - B1_Mus1 SINE Alu -1 147 2 2 1875 792 280 31 72 chr1 169113099 169113234 -28082198 + MTE2b LTR MaLR 10 193 -186 2 1875 1245 206 70 144 chr1 169113234 169113631 -28081801 + ORR1D1 LTR MaLR 5 372 -2 2 1875 792 251 77 64 chr1 169113631 169113810 -28081622 + MTE2b LTR MaLR 194 379 0 2 1875 884 279 59 62 chr1 169113838 169114159 -28081273 + MER2 DNA MER2_type 26 345 0 2 1875 513 0 0 0 chr1 169114562 169114619 -28080813 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1875 409 293 188 32 chr1 169114819 169115069 -28080363 + B4A SINE B4 2 290 -2 2 1875 529 254 44 71 chr1 169115114 169115296 -28080136 - B4A SINE B4 -1 291 115 2 1875 376 291 73 0 chr1 169115302 169115412 -28080020 - L2 LINE L2 -577 2842 2725 2 1875 270 333 67 25 chr1 169115448 169115815 -28079617 + L1_Mur3 LINE L1 3759 4189 -1957 2 1875 39 0 0 0 chr1 169116018 169116057 -28079375 + AT_rich Low_complexity Low_complexity 1 39 0 2 1875 229 44 89 0 chr1 169116620 169116665 -28078767 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 2 1875 781 189 14 0 chr1 169116669 169116817 -28078615 - B1_Mur4 SINE Alu 0 150 1 2 1875 197 137 17 121 chr1 169117443 169117501 -28077931 - L3 LINE CR1 -262 4227 4176 2 1875 217 361 36 0 chr1 169118547 169118630 -28076802 - L2c LINE L2 -20 3367 3282 2 1875 930 265 9 0 chr1 169118722 169118941 -28076491 + ID_B1 SINE B4 2 222 -2 2 1875 449 296 36 41 chr1 169119215 169119409 -28076023 + RMER10A LTR ERVL 18 210 -232 2 1875 528 16 0 0 chr1 169119432 169119493 -28075939 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1875 366 61 0 0 chr1 169119945 169119994 -28075438 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1875 400 324 79 37 chr1 169120035 169120250 -28075182 + LTR16D1 LTR ERVL 223 446 -229 2 1875 604 263 19 19 chr1 169120320 169120475 -28074957 - MTEa LTR MaLR -52 327 173 2 1875 242 261 75 75 chr1 169120465 169120585 -28074847 + LTR16D1 LTR ERVL 518 637 -14 2 1875 216 86 0 0 chr1 169121130 169121165 -28074267 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1875 252 86 0 0 chr1 169121196 169121231 -28074201 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1875 959 58 0 0 chr1 169122428 169122549 -28072883 + B1_Mus2 SINE Alu 1 121 -26 2 1875 21 36 0 0 chr1 169122727 169122755 -28072677 + AT_rich Low_complexity Low_complexity 1 28 0 2 1875 362 247 12 0 chr1 169122935 169123016 -28072416 + ID4 SINE ID 2 83 0 2 1875 504 305 39 82 chr1 169123581 169123788 -28071644 + MLT1D LTR MaLR 21 218 -287 2 1875 594 248 14 7 chr1 169123789 169123927 -28071505 + B1F SINE Alu 3 141 -8 2 1875 601 281 55 5 chr1 169123997 169124197 -28071235 + MLT1D LTR MaLR 182 391 -114 2 1875 1399 245 103 17 chr1 169124206 169124555 -28070877 + MTEa LTR MaLR 1 379 0 2 1875 407 274 10 0 chr1 169124559 169124661 -28070771 + MLT1D LTR MaLR 399 501 -4 2 1875 180 0 0 0 chr1 169125349 169125369 -28070063 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1875 649 275 8 0 chr1 169125505 169125636 -28069796 + RSINE1 SINE B4 3 134 -31 2 1875 423 0 0 0 chr1 169125637 169125684 -28069748 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1875 229 161 113 0 chr1 169125718 169125780 -28069652 + L1MC3 LINE L1 7377 7445 -340 2 1875 188 282 0 0 chr1 169126089 169126128 -28069304 - MER5A DNA MER1_type -80 109 71 2 1875 643 312 70 10 chr1 169126197 169126398 -28069034 + MER20 DNA MER1_type 4 216 -3 2 1875 401 253 69 31 chr1 169126419 169126578 -28068854 - MER5A DNA MER1_type -21 168 4 2 1875 186 43 0 0 chr1 169126831 169126854 -28068578 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 2 1875 262 316 13 0 chr1 169126863 169126939 -28068493 - ID_B1 SINE B4 -31 193 117 2 1875 595 161 200 0 chr1 169126940 169127070 -28068362 + URR1A DNA MER1_type 2 157 -69 2 1875 6439 79 69 84 chr1 169127070 169127730 -28067702 + L1Md_Gf LINE L1 1 656 -5866 2 1875 237 316 59 59 chr1 169127730 169127831 -28067601 + RLTR45 LTR ERVK 4 104 -378 2 1875 6439 79 69 84 chr1 169127831 169128318 -28067114 + L1Md_Gf LINE L1 657 1142 -5380 2 1875 34478 40 1 0 chr1 169128284 169132666 -28062766 + L1Md_T LINE L1 1203 5586 -297 2 1875 8696 30 0 0 chr1 169132666 169133662 -28061770 + L1Md_T LINE L1 5587 6582 0 2 1875 550 119 36 0 chr1 169133663 169133747 -28061685 + URR1A DNA MER1_type 139 225 -1 2 1875 307 294 68 10 chr1 169133755 169133858 -28061574 - B4 SINE B4 -174 118 10 2 1875 594 278 6 30 chr1 169134480 169134647 -28060785 + RSINE1 SINE B4 3 165 0 2 1875 327 49 0 0 chr1 169134661 169134702 -28060730 + (GGA)n Simple_repeat Simple_repeat 2 42 0 2 1875 695 266 28 14 chr1 169134738 169134916 -28060516 + B3A SINE B2 37 198 0 2 1875 1143 209 19 5 chr1 169134937 169135149 -28060283 + B3 SINE B2 1 215 -1 2 1875 411 164 145 16 chr1 169136511 169136613 -28058819 - RMER1B Other Other -11 1055 939 2 1875 1203 61 0 0 chr1 169136613 169136760 -28058672 + B1_Mus2 SINE Alu 1 147 0 2 1875 411 164 145 16 chr1 169136760 169136781 -28058651 - RMER1B Other Other -128 938 916 2 1875 1221 124 6 0 chr1 169136811 169136988 -28058444 + B2_Mm1t SINE B2 2 179 -14 2 1875 252 0 0 0 chr1 169137102 169137130 -28058302 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 1875 2907 181 147 75 chr1 169137139 169137962 -28057470 - RMER1B Other Other -140 926 45 2 1875 2284 122 39 14 chr1 169138059 169138417 -28057015 + ORR1B2 LTR MaLR 1 367 0 2 1875 247 325 97 32 chr1 169139365 169139489 -28055943 + MIRc SINE MIR 49 180 -88 2 1875 1329 97 32 0 chr1 169139587 169139773 -28055659 + B2_Mm2 SINE B2 3 194 -1 2 1875 394 200 77 5 chr1 169139927 169140034 -28055398 - PB1D10 SINE Alu -18 131 21 2 1875 3230 58 5 12 chr1 169140644 169141047 -28054385 - MTB LTR MaLR 0 400 1 2 1875 260 380 0 0 chr1 169141338 169141438 -28053994 - RMER15 LTR ERVL -105 470 371 2 1875 714 203 33 53 chr1 169141623 169141774 -28053658 + B1_Mur2 SINE Alu 1 148 -1 2 1875 204 125 0 0 chr1 169141774 169141806 -28053626 + (GGA)n Simple_repeat Simple_repeat 1 32 0 2 1875 311 195 128 13 chr1 169141810 169141840 -28053592 + L1MEg LINE L1 2000 2031 -4211 2 1875 1184 88 0 0 chr1 169141840 169141988 -28053444 + B1_Mus1 SINE Alu 1 148 0 2 1875 311 195 128 13 chr1 169141988 169142035 -28053397 + L1MEg LINE L1 2032 2086 -4156 2 1875 384 77 0 0 chr1 169142036 169142088 -28053344 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1875 330 330 52 9 chr1 169142088 169142204 -28053228 + L1MEg LINE L1 1839 1959 -4125 2 1875 801 53 30 15 chr1 169142998 169143132 -28052300 + (CA)n Simple_repeat Simple_repeat 2 137 0 2 1875 854 246 42 0 chr1 169143218 169143409 -28052023 + B3 SINE B2 2 200 -16 2 1875 242 209 0 23 chr1 169143431 169143475 -28051957 - PB1D9 SINE Alu -76 44 2 2 1875 226 191 14 113 chr1 169143475 169143512 -28051920 - MT2B2 LTR ERVL -420 164 135 2 1875 1088 98 0 0 chr1 169144183 169144326 -28051106 + B1_Mm SINE Alu 2 144 -3 2 1875 1116 171 27 45 chr1 169144393 169144613 -28050819 + URR1A DNA MER1_type 11 226 0 2 1875 441 284 29 58 chr1 169144463 169144635 -28050797 - CYRA11_Mm Unknown Y-chromosome -296 321 155 2 1875 460 327 66 6 chr1 169144718 169144884 -28050548 - ID_B1 SINE B4 -46 178 3 2 1875 643 257 41 7 chr1 169145210 169145355 -28050077 + B3A SINE B2 1 150 -48 2 1875 727 46 19 0 chr1 169145364 169145472 -28049960 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 1875 600 214 16 0 chr1 169146007 169146133 -28049299 - RSINE1 SINE B4 -35 130 3 2 1875 327 293 104 51 chr1 169146136 169146540 -28048892 + L1MEg LINE L1 4851 5281 -865 2 1875 1403 195 211 20 chr1 169146782 169147132 -28048300 - MTD LTR MaLR -2 417 1 2 1875 573 221 63 0 chr1 169147182 169147309 -28048123 + B1_Mur1 SINE Alu 3 137 -12 2 1875 360 0 0 0 chr1 169147311 169147351 -28048081 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2 1875 371 250 169 17 chr1 169147370 169147488 -28047944 - RSINE1 SINE B4 0 165 30 2 1875 3036 35 0 0 chr1 169147522 169147868 -28047564 - ORR1A0 LTR MaLR 0 346 1 2 1875 276 202 122 67 chr1 169147925 169148015 -28047417 + MLT1J1 LTR MaLR 63 179 -333 2 1875 226 304 114 132 chr1 169148084 169148201 -28047231 + MLT1J1 LTR MaLR 297 423 -89 2 1875 1517 112 9 13 chr1 169148201 169148428 -28047004 + URR1A DNA MER1_type 1 226 0 2 1875 226 304 114 132 chr1 169148428 169148530 -28046902 + MLT1J1 LTR MaLR 424 512 0 2 1875 1302 231 84 36 chr1 169148706 169149065 -28046367 + MTE2b LTR MaLR 1 376 -3 2 1875 516 157 44 22 chr1 169150133 169150224 -28045208 + B1_Mur2 SINE Alu 6 98 -51 2 1875 1250 83 0 11 chr1 169150248 169150430 -28045002 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1875 535 157 9 9 chr1 169150430 169150539 -28044893 + GA-rich Low_complexity Low_complexity 2 110 0 2 1875 345 222 42 0 chr1 169150539 169150611 -28044821 + B4A SINE B4 218 292 0 2 1875 330 26 0 0 chr1 169151003 169151042 -28044390 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1875 332 260 13 25 chr1 169151455 169151534 -28043898 - ID4_ SINE ID -3 80 3 3 1875 384 292 73 0 chr1 169151592 169151688 -28043744 - PB1D10 SINE Alu -5 112 10 3 1875 577 215 38 8 chr1 169151883 169152014 -28043418 + B3 SINE B2 81 215 -1 3 1875 666 196 104 15 chr1 169152253 169152388 -28043044 + B1_Mur2 SINE Alu 1 147 -2 3 1875 544 171 0 0 chr1 169152424 169152512 -28042920 + B3 SINE B2 3 90 -126 3 1875 298 377 96 0 chr1 169152512 169152570 -28042862 + RSINE1 SINE B4 4 163 -2 3 1875 21 0 0 0 chr1 169153870 169153891 -28041541 + GC_rich Low_complexity Low_complexity 1 21 0 3 1875 577 236 47 8 chr1 169156999 169157127 -28038305 - B1_Mur4 SINE Alu -9 141 9 3 1875 234 331 51 82 chr1 169157050 169157208 -28038224 - MT2B2 LTR ERVL -345 239 87 3 1875 639 26 0 0 chr1 169157320 169157397 -28038035 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1875 513 326 55 30 chr1 169157405 169157604 -28037828 - B4A SINE B4 -1 291 88 3 1875 328 221 51 13 chr1 169158167 169158245 -28037187 + ID4 SINE ID 3 83 0 3 1875 720 189 148 6 chr1 169159752 169159928 -28035504 + B3 SINE B2 4 204 -12 3 1875 243 0 0 0 chr1 169159928 169159955 -28035477 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 1875 200 35 35 0 chr1 169160486 169160515 -28034917 + (CCA)n Simple_repeat Simple_repeat 2 31 0 3 1875 1265 85 68 0 chr1 169160861 169160875 -28034557 - B2_Mm1a SINE B2 -4 189 176 3 1875 396 0 0 0 chr1 169160875 169160919 -28034513 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 1875 1265 85 68 0 chr1 169160919 169161081 -28034351 - B2_Mm1a SINE B2 -18 175 2 3 1875 198 0 0 0 chr1 169161236 169161258 -28034174 + (CTG)n Simple_repeat Simple_repeat 3 24 0 3 1875 262 252 57 57 chr1 169161374 169161479 -28033953 + MIRc SINE MIR 31 135 -133 3 1875 573 234 94 21 chr1 169161527 169161719 -28033713 - ID_B1 SINE B4 -18 206 1 3 1875 183 42 0 0 chr1 169162256 169162280 -28033152 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 3 1875 253 185 0 100 chr1 169162880 169162940 -28032492 + PB1D9 SINE Alu 10 63 -57 3 1875 369 109 0 0 chr1 169163419 169163474 -28031958 + (TTA)n Simple_repeat Simple_repeat 3 57 0 3 1875 715 196 155 52 chr1 169163873 169164067 -28031365 - ID_B1 SINE B4 -9 215 2 3 1875 614 251 91 30 chr1 169168242 169168439 -28026993 + B3A SINE B2 3 211 -5 3 1875 414 286 101 7 chr1 169168442 169168590 -28026842 + RSINE1 SINE B4 4 165 0 3 1875 338 205 78 78 chr1 169168619 169168709 -28026723 + B1_Mus2 SINE Alu 15 104 -43 3 1875 375 23 0 0 chr1 169169609 169169653 -28025779 + (TGGGGG)n Simple_repeat Simple_repeat 5 48 0 3 1875 477 207 172 0 chr1 169169772 169169888 -28025544 - B1_Mus1 SINE Alu -1 147 12 3 1875 226 339 156 12 chr1 169171585 169171758 -28023674 + MLT1J LTR MaLR 107 304 -208 3 1875 1595 156 71 3 chr1 169172109 169172404 -28023028 + MTC LTR MaLR 103 417 -4 3 1875 181 256 127 63 chr1 169172442 169172584 -28022848 - MIR SINE MIR -75 187 37 3 1875 614 98 11 0 chr1 169173108 169173200 -28022232 + B2_Mm1t SINE B2 4 96 -97 3 1875 202 114 0 28 chr1 169174183 169174219 -28021213 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 3 1875 400 295 149 29 chr1 169174407 169174683 -28020749 + L1MC1 LINE L1 5919 6227 -106 3 1875 357 254 144 0 chr1 169174984 169175102 -28020330 + B4A SINE B4 153 287 -5 3 1875 180 0 0 0 chr1 169175769 169175789 -28019643 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1875 245 51 26 0 chr1 169176016 169176055 -28019377 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1875 479 282 154 17 chr1 169176216 169176859 -28018573 + L1M4 LINE L1 5016 5796 -387 3 1875 741 134 12 134 chr1 169176974 169177138 -28018294 - B1_Mus2 SINE Alu -2 145 2 3 1875 499 156 10 68 chr1 169178416 169178519 -28016913 + B3 SINE B2 2 98 -118 3 1875 291 54 0 0 chr1 169178563 169178600 -28016832 + (CATA)n Simple_repeat Simple_repeat 4 40 0 3 1875 289 255 72 45 chr1 169178872 169178983 -28016449 + PB1D7 SINE Alu 1 114 -6 3 1875 310 256 127 8 chr1 169179316 169179442 -28015990 + B4 SINE B4 1 141 -151 3 1875 936 70 0 37 chr1 169180214 169180348 -28015084 + B1_Mm SINE Alu 1 129 -18 3 1875 306 0 0 0 chr1 169180361 169180395 -28015037 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1875 644 200 30 23 chr1 169180405 169180538 -28014894 + B1_Mur3 SINE Alu 2 135 -14 3 1875 602 324 47 14 chr1 169180619 169180832 -28014600 + B4 SINE B4 6 225 -67 3 1875 306 67 0 0 chr1 169180855 169180900 -28014532 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1875 360 0 0 0 chr1 169180900 169180940 -28014492 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1875 294 283 93 9 chr1 169181182 169181289 -28014143 + PB1D10 SINE Alu 1 116 -1 3 1875 677 298 50 5 chr1 169181835 169182054 -28013378 + MLT1A0 LTR MaLR 41 269 -96 3 1875 436 239 246 16 chr1 169182865 169183056 -28012376 - RCHARR1 DNA MER1_type -17 957 723 3 1875 727 193 0 22 chr1 169183176 169183314 -28012118 + B1_Mur1 SINE Alu 14 148 -1 3 1875 380 198 188 17 chr1 169183327 169183503 -28011929 + B3A SINE B2 9 214 -2 3 1875 1849 265 124 23 chr1 169183511 169184172 -28011260 - RCHARR1 DNA MER1_type -240 734 7 3 1875 450 233 48 0 chr1 169184195 169184298 -28011134 + RSINE1 SINE B4 12 119 -46 3 1875 3014 65 2 2 chr1 169184918 169185318 -28010114 + MTB LTR MaLR 1 400 0 3 1875 875 181 181 0 chr1 169185969 169186184 -28009248 - ORR1D-int LTR MaLR -762 608 355 3 1875 207 182 0 0 chr1 169186192 169186225 -28009207 + polypyrimidine Low_complexity Low_complexity 2 34 0 3 1875 253 180 226 20 chr1 169186249 169186351 -28009081 + ORR1D1-int LTR MaLR 109 231 -1139 3 1875 827 219 186 28 chr1 169186350 169186641 -28008791 + MT2A LTR ERVL 183 519 -14 3 1875 358 309 195 0 chr1 169186639 169186762 -28008670 - ID_B1 SINE B4 -46 178 32 3 1875 237 310 28 0 chr1 169186773 169186844 -28008588 + PB1D10 SINE Alu 39 111 -6 3 1875 1186 174 151 22 chr1 169187616 169187933 -28007499 + ORR1D1 LTR MaLR 15 372 -2 3 1875 544 239 36 0 chr1 169188001 169188139 -28007293 + B1_Mur1 SINE Alu 1 143 -6 3 1875 594 163 100 8 chr1 169188141 169188271 -28007161 + B1_Mur3 SINE Alu 1 142 -7 3 1875 258 235 48 36 chr1 169188424 169188508 -28006924 + MER2 DNA MER2_type 209 293 -52 3 1875 390 129 0 0 chr1 169188523 169188585 -28006847 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1875 3361 183 61 106 chr1 169188773 169189702 -28005730 - RMER19B LTR ERVK -14 888 1 3 1875 272 167 21 0 chr1 169189702 169189750 -28005682 + ID4_ SINE ID 24 72 -11 3 1875 975 48 12 105 chr1 169190396 169190558 -28004874 + B1_Mus2 SINE Alu 1 147 0 3 1875 1205 105 0 59 chr1 169190606 169190809 -28004623 + B2_Mm2 SINE B2 1 191 -4 3 1875 230 181 111 0 chr1 169190810 169190882 -28004550 + L1MEf LINE L1 997 1076 -5124 3 1875 468 220 47 60 chr1 169190951 169191101 -28004331 + B1_Mur1 SINE Alu 2 149 0 3 1875 470 217 8 50 chr1 169191180 169191301 -28004131 - B3 SINE B2 -100 116 1 3 1875 298 309 0 0 chr1 169193188 169193256 -28002176 + B1F1 SINE Alu 2 69 -80 3 1875 198 71 0 0 chr1 169193274 169193302 -28002130 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1875 226 279 98 0 chr1 169193572 169193633 -28001799 - B1_Mus1 SINE Alu -74 74 8 3 1875 1118 169 114 28 chr1 169193643 169193898 -28001534 + RMER19B LTR ERVK 138 414 -488 3 1875 381 315 140 87 chr1 169193940 169194204 -28001228 + HAL1 LINE L1 2120 2397 -110 3 1875 192 241 0 0 chr1 169194311 169194369 -28001063 + (CAT)n Simple_repeat Simple_repeat 3 60 0 3 1875 288 283 43 11 chr1 169194467 169194560 -28000872 - B1_Mur2 SINE Alu -48 101 6 3 1875 275 212 26 132 chr1 169194617 169194731 -28000701 + MT2B LTR ERVL 156 257 -344 3 1875 643 143 23 45 chr1 169194631 169194763 -28000669 + B1_Mur4 SINE Alu 10 138 -12 3 1875 695 173 47 94 chr1 169194780 169194971 -28000461 + ORR1B2 LTR MaLR 13 194 -173 3 1875 280 315 18 44 chr1 169195722 169195835 -27999597 + MLT1A1 LTR MaLR 295 404 -4 3 1875 233 178 0 43 chr1 169196179 169196226 -27999206 + PB1D7 SINE Alu 13 57 -63 3 1875 331 268 61 18 chr1 169196274 169196388 -27999044 + ID_B1 SINE B4 14 132 -92 3 1875 1167 104 54 11 chr1 169196476 169196661 -27998771 + B2_Mm2 SINE B2 1 193 -2 3 1875 278 275 49 78 chr1 169196726 169196868 -27998564 - MER21B LTR ERV1 -53 810 673 3 1875 499 90 180 0 chr1 169196889 169197000 -27998432 + BC1_Mm scRNA scRNA 1 131 -21 3 1875 345 291 82 26 chr1 169197388 169197421 -27998011 - MER21B LTR ERV1 -446 417 386 3 1875 270 0 0 0 chr1 169197421 169197451 -27997981 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1875 345 291 82 26 chr1 169197451 169197611 -27997821 - MER21B LTR ERV1 -478 385 214 3 1875 1104 141 34 39 chr1 169197679 169197885 -27997547 + URR1A DNA MER1_type 16 220 -6 3 1875 359 185 134 12 chr1 169197885 169197967 -27997465 - PB1D9 SINE Alu -27 93 2 3 1875 254 242 40 90 chr1 169197967 169197996 -27997436 - MT2B LTR ERVL -435 166 143 3 1875 279 283 133 44 chr1 169198050 169198231 -27997201 + ID_B1 SINE B4 18 214 -10 3 1875 198 0 0 0 chr1 169198285 169198307 -27997125 + (G)n Simple_repeat Simple_repeat 1 22 0 3 1875 541 269 41 0 chr1 169199069 169199214 -27996218 + RSINE1 SINE B4 1 151 -14 3 1875 378 279 80 7 chr1 169199360 169199497 -27995935 - B1_Mur1 SINE Alu -2 147 1 3 1875 243 114 0 0 chr1 169199780 169199824 -27995608 + (CGGGG)n Simple_repeat Simple_repeat 1 44 0 3 1875 259 301 60 47 chr1 169200261 169200411 -27995021 - L2 LINE L2 -586 2833 2682 4 1875 680 227 162 15 chr1 169200797 169200994 -27994438 + URR1A DNA MER1_type 1 226 0 4 1875 368 165 174 11 chr1 169201388 169201480 -27993952 + PB1D9 SINE Alu 1 107 -13 4 1875 638 183 15 15 chr1 169202481 169202614 -27992818 - B1_Mur2 SINE Alu -7 142 10 4 1875 1137 49 0 0 chr1 169202958 169203101 -27992331 + B1_Mus2 SINE Alu 5 147 0 4 1875 236 91 23 0 chr1 169203105 169203149 -27992283 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1875 351 0 0 0 chr1 169203266 169203305 -27992127 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1875 414 0 0 0 chr1 169203305 169203350 -27992082 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1875 293 250 53 44 chr1 169204225 169204338 -27991094 + PB1D9 SINE Alu 7 120 0 4 1875 326 319 75 79 chr1 169204356 169204584 -27990848 - B4A SINE B4 0 292 66 4 1875 952 62 0 15 chr1 169204713 169204844 -27990588 - B1_Mus1 SINE Alu -15 133 5 4 1875 249 360 8 53 chr1 169205240 169205372 -27990060 + ID_B1 SINE B4 82 207 -17 4 1875 382 287 57 16 chr1 169205386 169205510 -27989922 + RSINE1 SINE B4 2 130 -35 4 1875 24 53 0 0 chr1 169205559 169205597 -27989835 + AT_rich Low_complexity Low_complexity 1 38 0 4 1875 252 263 58 58 chr1 169205609 169205730 -27989702 + B1_Mur4 SINE Alu 25 145 -5 4 1875 265 256 11 58 chr1 169205782 169205869 -27989563 + RSINE1 SINE B4 3 85 -80 4 1875 255 217 43 21 chr1 169205857 169205951 -27989481 - MTC-int LTR MaLR -67 1191 1096 4 1875 322 265 39 48 chr1 169205979 169206082 -27989350 + B3A SINE B2 73 174 -24 4 1875 1154 36 0 0 chr1 169206174 169206314 -27989118 + B1_Mus2 SINE Alu 1 140 -7 4 1875 1173 96 55 17 chr1 169206339 169206520 -27988912 + B2_Mm2 SINE B2 1 188 -7 4 1875 724 132 50 0 chr1 169206766 169206887 -27988545 + B1_Mur3 SINE Alu 10 136 -13 4 1875 623 212 18 42 chr1 169207057 169207224 -27988208 + ID_B1 SINE B4 40 202 -22 4 1875 366 271 14 35 chr1 169207235 169207380 -27988052 + RSINE1 SINE B4 5 146 -19 4 1875 378 0 0 0 chr1 169207396 169207438 -27987994 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1875 236 30 30 0 chr1 169207505 169207538 -27987894 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1875 458 289 123 22 chr1 169207543 169207681 -27987751 - RSINE1 SINE B4 -5 160 9 4 1875 213 121 0 0 chr1 169207771 169207804 -27987628 + (TTC)n Simple_repeat Simple_repeat 2 34 0 4 1875 1132 43 0 0 chr1 169207818 169207958 -27987474 - B1_Mus1 SINE Alu -8 140 1 4 1875 1246 90 32 0 chr1 169207968 169208157 -27987275 - B2_Mm2 SINE B2 0 195 1 4 1875 438 161 403 0 chr1 169208354 169208503 -27986929 + B3 SINE B2 2 210 -6 4 1875 609 196 13 65 chr1 169208511 169208664 -27986768 + B1_Mus2 SINE Alu 2 146 -1 4 1875 222 109 20 61 chr1 169209770 169209819 -27985613 + B1_Mus2 SINE Alu 19 65 -82 4 1875 1001 62 0 100 chr1 169209838 169209937 -27985495 - B1_Mus2 SINE Alu 0 147 64 4 1875 1384 57 5 30 chr1 169209937 169210135 -27985297 + B2_Mm1a SINE B2 1 193 0 4 1875 1001 62 0 100 chr1 169210135 169210195 -27985237 - B1_Mus2 SINE Alu -84 63 4 4 1875 614 198 200 19 chr1 169211310 169211470 -27983962 - B3 SINE B2 -27 189 1 4 1875 1052 61 0 52 chr1 169211565 169211720 -27983712 - B1_Mus1 SINE Alu 0 148 2 4 1875 305 231 149 5 chr1 169211764 169211859 -27983573 + PB1D10 SINE Alu 14 120 0 4 1875 786 107 30 15 chr1 169211900 169212033 -27983399 - B1_Mur3 SINE Alu 0 149 15 4 1875 1054 56 28 0 chr1 169213274 169213417 -27982015 + B1_Mus1 SINE Alu 2 148 0 4 1876 29 0 0 0 chr1 169215304 169215333 -27980099 + GC_rich Low_complexity Low_complexity 1 29 0 4 1876 297 282 87 0 chr1 169216023 169216126 -27979306 + MIR SINE MIR 114 225 -37 4 1876 604 128 0 21 chr1 169216263 169216359 -27979073 - B1_Mus2 SINE Alu -9 138 45 4 1876 1012 24 0 0 chr1 169216357 169216482 -27978950 + B1_Mm SINE Alu 17 141 -6 4 1876 369 75 0 0 chr1 169216483 169216536 -27978896 + (CAA)n Simple_repeat Simple_repeat 1 53 0 4 1876 593 208 173 7 chr1 169216536 169216686 -27978746 + B3 SINE B2 34 208 -8 4 1876 637 141 118 52 chr1 169216718 169216853 -27978579 - B1_Mur4 SINE Alu 0 150 7 4 1876 340 263 68 74 chr1 169216724 169216872 -27978560 - B4 SINE B4 -69 223 77 4 1876 455 235 19 10 chr1 169217046 169217149 -27978283 + PB1D9 SINE Alu 1 104 -16 4 1876 358 255 50 10 chr1 169217179 169217278 -27978154 - ID_B1 SINE B4 0 224 122 4 1876 518 232 34 27 chr1 169217715 169217861 -27977571 + B1_Mur3 SINE Alu 2 148 -1 4 1876 674 211 199 6 chr1 169218285 169218461 -27976971 + B3 SINE B2 1 210 -6 4 1876 481 176 78 0 chr1 169218567 169218669 -27976763 - B1_Mur3 SINE Alu -39 110 1 4 1876 281 237 12 73 chr1 169218598 169218680 -27976752 - B4A SINE B4 -136 156 80 4 1876 365 297 35 90 chr1 169218720 169218920 -27976512 + MLT1A1 LTR MaLR 2 190 -218 4 1876 213 292 56 11 chr1 169220263 169220353 -27975079 + MER5A DNA MER1_type 55 148 -41 4 1876 181 262 0 0 chr1 169220401 169220443 -27974989 + MIRc SINE MIR 41 82 -186 4 1876 43 0 0 0 chr1 169220879 169220922 -27974510 + AT_rich Low_complexity Low_complexity 1 43 0 4 1876 954 45 0 43 chr1 169221051 169221189 -27974243 + B1_Mm SINE Alu 10 141 -6 4 1876 245 27 54 0 chr1 169221192 169221229 -27974203 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1876 954 101 131 0 chr1 169221247 169221415 -27974017 + B2_Mm2 SINE B2 1 190 -5 4 1876 302 317 12 118 chr1 169221525 169221686 -27973746 + B3A SINE B2 46 189 -9 4 1876 23 0 0 0 chr1 169221697 169221720 -27973712 + AT_rich Low_complexity Low_complexity 1 23 0 4 1876 626 304 51 13 chr1 169221855 169222075 -27973357 + B4A SINE B4 1 230 -62 4 1876 1248 96 32 5 chr1 169222075 169222264 -27973168 + B2_Mm2 SINE B2 2 195 0 4 1876 626 304 51 13 chr1 169222264 169222280 -27973152 + B4A SINE B4 231 246 -46 4 1876 498 199 20 57 chr1 169222293 169222405 -27973027 + B1_Mur1 SINE Alu 3 106 -43 4 1876 401 0 20 0 chr1 169222405 169222454 -27972978 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1876 341 270 58 87 chr1 169222454 169222479 -27972953 + B1F SINE Alu 107 136 -13 4 1876 252 159 0 0 chr1 169222539 169222583 -27972849 - RSINE1 SINE B4 -39 126 83 4 1876 295 351 115 39 chr1 169222620 169222925 -27972507 - LTR16B2 LTR ERVL -81 381 54 4 1876 409 186 69 40 chr1 169222994 169223095 -27972337 + B1F2 SINE Alu 37 140 -9 4 1876 1212 55 0 0 chr1 169223267 169223413 -27972019 + B1_Mm SINE Alu 2 147 0 4 1876 1114 76 14 0 chr1 169223423 169223567 -27971865 + B1_Mus2 SINE Alu 2 147 0 4 1876 183 42 0 0 chr1 169223578 169223602 -27971830 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1876 366 23 0 0 chr1 169223709 169223752 -27971680 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1876 833 273 5 0 chr1 169223752 169223950 -27971482 - ID_B1 SINE B4 -18 206 8 4 1876 803 194 0 0 chr1 169224169 169224313 -27971119 - B1_Mur4 SINE Alu -1 149 6 4 1876 434 303 20 0 chr1 169224322 169224474 -27970958 - L1M4b LINE L1 -3718 3616 3462 4 1876 210 71 0 0 chr1 169224516 169224544 -27970888 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 4 1876 232 226 113 0 chr1 169224556 169224618 -27970814 + L1M5 LINE L1 3572 3640 -2506 4 1876 222 267 119 0 chr1 169224639 169224731 -27970701 + B1F1 SINE Alu 12 114 -6 4 1876 602 250 23 0 chr1 169224746 169224878 -27970554 + ID_B1 SINE B4 82 216 -8 4 1876 642 268 70 28 chr1 169224897 169225112 -27970320 + B4A SINE B4 7 230 -62 4 1876 383 186 151 0 chr1 169225113 169225199 -27970233 + B1_Mur2 SINE Alu 39 137 -12 4 1876 321 26 0 0 chr1 169225200 169225238 -27970194 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1876 308 256 146 16 chr1 169225271 169225394 -27970038 + MTE2a LTR MaLR 178 316 -63 4 1876 283 261 40 75 chr1 169225534 169225708 -27969724 + L1MA6 LINE L1 6108 6275 -25 4 1876 302 284 54 18 chr1 169225708 169225819 -27969613 - B1_Mus1 SINE Alu -21 127 13 4 1876 454 238 20 0 chr1 169225726 169225827 -27969605 - ID_B1 SINE B4 -40 184 82 4 1876 323 303 45 0 chr1 169225868 169226000 -27969432 - L1MA9 LINE L1 -333 5979 5842 4 1876 250 234 0 0 chr1 169226051 169226098 -27969334 - B4 SINE B4 -4 288 242 4 1876 497 256 101 0 chr1 169226551 169226680 -27968752 - B4 SINE B4 -129 163 22 4 1876 1325 87 38 0 chr1 169226682 169226867 -27968565 - B2_Mm2 SINE B2 -3 192 1 4 1876 280 214 18 0 chr1 169226962 169227018 -27968414 - RSINE1 SINE B4 -22 143 87 4 1876 214 200 20 20 chr1 169227109 169227160 -27968272 + CT-rich Low_complexity Low_complexity 3 53 0 4 1876 1492 43 31 26 chr1 169227165 169227357 -27968075 - B2_Mm1a SINE B2 0 193 1 4 1876 232 340 93 9 chr1 169227362 169227469 -27967963 - PB1D10 SINE Alu 0 117 2 4 1876 1035 123 0 14 chr1 169227711 169227859 -27967573 + B1_Mus2 SINE Alu 2 147 0 4 1876 182 360 71 9 chr1 169228278 169228390 -27967042 + MIR3 SINE MIR 68 186 -22 4 1876 500 225 82 0 chr1 169228543 169228669 -27966763 + ID_B1 SINE B4 85 217 -7 4 1876 566 298 25 56 chr1 169228675 169228794 -27966638 + RSINE1 SINE B4 5 119 -46 4 1876 1381 75 32 0 chr1 169228794 169228980 -27966452 - B2_Mm1t SINE B2 0 193 2 4 1876 566 298 25 56 chr1 169228980 169229020 -27966412 + RSINE1 SINE B4 120 159 -6 4 1876 810 167 0 21 chr1 169229067 169229208 -27966224 - B1_Mur4 SINE Alu -12 138 1 4 1876 197 65 0 31 chr1 169229457 169229489 -27965943 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1876 1277 21 0 0 chr1 169229489 169229634 -27965798 - B1_Mm SINE Alu -1 146 2 5 1876 1789 129 152 14 chr1 169229763 169230124 -27965308 + MTC LTR MaLR 1 411 -10 5 1876 335 291 116 34 chr1 169230154 169230300 -27965132 - Lx8 LINE L1 -182 7291 7134 5 1876 361 211 16 0 chr1 169230375 169230503 -27964929 + CT-rich Low_complexity Low_complexity 1 130 0 5 1876 1655 42 0 0 chr1 169230686 169230878 -27964554 - B2_Mm1a SINE B2 -1 192 1 5 1876 462 304 66 89 chr1 169230943 169231214 -27964218 + B4A SINE B4 5 269 -23 5 1876 275 179 32 11 chr1 169231291 169231354 -27964078 + B3A SINE B2 31 91 -104 5 1876 669 238 135 0 chr1 169231447 169231632 -27963800 - ID_B1 SINE B4 -5 219 10 5 1876 419 202 34 0 chr1 169231654 169231743 -27963689 - PB1D9 SINE Alu -5 115 24 5 1876 999 142 0 0 chr1 169231843 169231991 -27963441 + B1_Mur4 SINE Alu 1 148 -2 5 1876 338 281 157 7 chr1 169232010 169232150 -27963282 - RSINE1 SINE B4 -2 163 3 5 1876 333 47 0 0 chr1 169232290 169232333 -27963099 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1876 267 157 0 0 chr1 169232426 169232477 -27962955 + CT-rich Low_complexity Low_complexity 2 52 0 5 1876 399 264 63 16 chr1 169232549 169232676 -27962756 - B4 SINE B4 -54 238 106 5 1876 2325 63 3 0 chr1 169232681 169232999 -27962433 + ORR1A2 LTR MaLR 1 319 -8 5 1876 290 220 0 0 chr1 169233006 169233056 -27962376 - B4 SINE B4 -193 99 50 5 1876 471 183 262 0 chr1 169233059 169233184 -27962248 + B3 SINE B2 2 160 -56 5 1876 829 258 81 31 chr1 169233365 169233625 -27961807 - B4 SINE B4 -16 276 4 5 1876 591 263 155 5 chr1 169233642 169233829 -27961603 - ID_B1 SINE B4 -8 216 2 5 1876 1099 103 0 0 chr1 169234377 169234523 -27960909 + B1_Mus1 SINE Alu 2 147 -1 5 1876 208 49 0 68 chr1 169234533 169234577 -27960855 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 5 1876 235 194 200 67 chr1 169235045 169235150 -27960282 - PB1D9 SINE Alu 0 120 2 5 1876 564 254 56 36 chr1 169235901 169236097 -27959335 - B3 SINE B2 -15 201 2 5 1876 198 0 0 0 chr1 169236123 169236145 -27959287 + (TGGGGG)n Simple_repeat Simple_repeat 1 22 0 5 1876 1001 91 23 0 chr1 169236145 169236277 -27959155 - B1_Mus1 SINE Alu -10 138 4 5 1876 707 187 0 0 chr1 169236303 169236437 -27958995 - B1_Mur4 SINE Alu 0 150 17 5 1876 1143 86 0 6 chr1 169236445 169236609 -27958823 - B2_Mm2 SINE B2 -18 177 15 5 1876 718 147 124 0 chr1 169236613 169236742 -27958690 - B1_Mus2 SINE Alu 0 147 3 5 1876 530 224 114 90 chr1 169236743 169236910 -27958522 - B3 SINE B2 -24 171 1 5 1876 1151 81 0 0 chr1 169237326 169237474 -27957958 - B1_Mus1 SINE Alu 0 148 1 5 1876 393 202 151 19 chr1 169237820 169237926 -27957506 + PB1D9 SINE Alu 1 120 0 5 1876 1245 34 0 0 chr1 169238186 169238332 -27957100 - B1_Mus1 SINE Alu -1 147 2 5 1876 290 268 57 23 chr1 169239632 169239720 -27955712 + PB1D10 SINE Alu 23 113 -4 5 1876 192 40 0 0 chr1 169239881 169239906 -27955526 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1876 189 0 0 0 chr1 169239933 169239954 -27955478 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1876 361 202 90 0 chr1 169240431 169240520 -27954912 - ID_B1 SINE B4 0 224 128 5 1876 203 0 0 36 chr1 169240652 169240680 -27954752 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1876 797 239 31 45 chr1 169240682 169240905 -27954527 - ID_B1 SINE B4 -4 220 1 5 1876 1162 122 31 31 chr1 169241334 169241357 -27954075 - B2_Mm2 SINE B2 -1 194 167 5 1876 261 0 0 0 chr1 169241357 169241386 -27954046 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1876 1144 68 0 7 chr1 169241387 169241535 -27953897 - B1_Mm SINE Alu 0 147 1 5 1876 222 37 0 0 chr1 169241539 169241566 -27953866 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1876 1162 122 31 31 chr1 169241566 169241729 -27953703 - B2_Mm2 SINE B2 -29 166 5 5 1876 251 323 113 10 chr1 169241928 169242025 -27953407 - B1F1 SINE Alu -31 118 12 5 1876 430 319 9 0 chr1 169242309 169242422 -27953010 + PB1D10 SINE Alu 2 115 -2 5 1876 556 158 34 0 chr1 169242432 169242546 -27952886 + B1F2 SINE Alu 13 136 -13 5 1876 252 0 0 0 chr1 169242546 169242574 -27952858 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1876 277 162 72 14 chr1 169242603 169242672 -27952760 + B1_Mur2 SINE Alu 54 126 -23 5 1876 494 276 88 25 chr1 169242731 169242891 -27952541 + B3A SINE B2 9 178 -20 5 1876 342 0 0 0 chr1 169242907 169242945 -27952487 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1876 213 39 0 0 chr1 169243027 169243053 -27952379 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1876 294 315 9 18 chr1 169243060 169243170 -27952262 - PB1D10 SINE Alu -8 109 1 5 1876 707 164 31 0 chr1 169243445 169243573 -27951859 - B1_Mur4 SINE Alu -18 132 1 5 1876 324 70 0 0 chr1 169243823 169243866 -27951566 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1876 266 0 29 0 chr1 169243965 169243999 -27951433 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 5 1876 1162 29 0 35 chr1 169244000 169244143 -27951289 - B1_Mm SINE Alu -8 139 2 5 1876 756 209 0 0 chr1 169244327 169244504 -27950928 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1876 336 221 0 0 chr1 169244505 169244582 -27950850 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 5 1876 848 204 7 0 chr1 169244600 169244747 -27950685 - B1_Mur4 SINE Alu 0 150 3 5 1876 1774 235 118 50 chr1 169244794 169245471 -27949961 - Lx9 LINE L1 -36 7608 6886 5 1876 507 185 0 0 chr1 169245497 169245589 -27949843 - B3 SINE B2 -124 92 1 5 1876 640 205 47 0 chr1 169245598 169245725 -27949707 - Lx9 LINE L1 -763 6881 6749 5 1876 1622 42 5 0 chr1 169245785 169245977 -27949455 + B2_Mm1t SINE B2 1 193 0 5 1876 1621 26 16 0 chr1 169246008 169246197 -27949235 + B2_Mm1a SINE B2 2 193 0 5 1876 522 205 17 67 chr1 169246615 169246735 -27948697 + PB1D9 SINE Alu 6 119 -1 5 1876 744 150 6 104 chr1 169247057 169247221 -27948211 - B1_Mur4 SINE Alu -1 149 2 5 1876 1269 98 49 0 chr1 169247224 169247408 -27948024 - B2_Mm2 SINE B2 -2 193 1 5 1876 898 196 77 48 chr1 169247435 169247644 -27947788 - B3 SINE B2 -1 215 1 5 1876 588 220 68 0 chr1 169247953 169248085 -27947347 - B1_Mur2 SINE Alu 0 149 9 5 1876 1348 98 38 0 chr1 169248096 169248279 -27947153 - B2_Mm2 SINE B2 -5 190 1 5 1876 1424 75 16 5 chr1 169248286 169248473 -27946959 - B2_Mm2 SINE B2 -5 190 2 5 1876 228 281 35 35 chr1 169248925 169249010 -27946422 + PB1 SINE Alu 1 85 -42 5 1876 270 130 17 110 chr1 169249190 169249278 -27946154 - PB1D9 SINE Alu -1 146 50 5 1876 325 231 155 122 chr1 169249580 169249614 -27945818 + B4 SINE B4 65 217 -75 5 1876 663 101 0 44 chr1 169249614 169249728 -27945704 + B1_Mur4 SINE Alu 33 141 -9 5 1876 603 112 155 0 chr1 169250028 169250144 -27945288 + RMER6B LTR ERVK 1 134 -327 5 1876 1053 156 323 7 chr1 169250579 169250876 -27944556 + RMER6B LTR ERVK 71 461 0 5 1876 594 218 8 8 chr1 169250883 169251008 -27944424 - RSINE1 SINE B4 -37 128 4 5 1876 765 146 85 34 chr1 169251116 169251279 -27944153 + URR1B DNA MER1_type 39 211 -14 5 1876 1822 122 112 0 chr1 169251279 169251575 -27943857 - ORR1A4 LTR MaLR 0 329 1 5 1876 765 146 85 34 chr1 169251575 169251588 -27943844 + URR1B DNA MER1_type 212 224 -1 5 1876 855 189 14 0 chr1 169251626 169251774 -27943658 - B1_Mur4 SINE Alu 0 150 1 5 1876 481 207 97 60 chr1 169252298 169252391 -27943041 + L1MA5 LINE L1 6071 6174 -126 5 1876 189 107 0 0 chr1 169252391 169252419 -27943013 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5 1876 481 207 97 60 chr1 169252419 169252510 -27942922 + L1MA5 LINE L1 6175 6261 -39 5 1876 334 262 26 72 chr1 169252552 169252704 -27942728 + RSINE1 SINE B4 2 146 -19 5 1876 563 113 113 0 chr1 169252775 169252872 -27942560 - B1_Mur4 SINE Alu 0 150 43 5 1876 180 111 0 0 chr1 169252997 169253024 -27942408 + (CAT)n Simple_repeat Simple_repeat 2 28 0 5 1876 1178 61 0 0 chr1 169253058 169253206 -27942226 + B1_Mus1 SINE Alu 1 148 0 5 1876 348 311 0 88 chr1 169253225 169253338 -27942094 - PB1D10 SINE Alu -13 104 2 5 1876 1375 79 17 0 chr1 169253414 169253591 -27941841 + B2_Mm2 SINE B2 2 181 -14 5 1876 242 143 0 0 chr1 169253825 169253867 -27941565 + ID_B1 SINE B4 110 151 -73 5 1876 224 218 30 121 chr1 169253867 169253924 -27941508 + PB1D9 SINE Alu 29 118 -2 5 1876 1223 47 0 0 chr1 169254005 169254153 -27941279 - B1_Mus1 SINE Alu 0 148 1 5 1876 1078 83 35 0 chr1 169254408 169254552 -27940880 + B1_Mur4 SINE Alu 1 149 -1 5 1876 253 226 54 97 chr1 169254593 169254618 -27940814 - B4A SINE B4 0 292 273 5 1876 333 0 0 0 chr1 169254618 169254655 -27940777 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 5 1876 253 226 54 97 chr1 169254655 169254722 -27940710 - B4A SINE B4 -20 272 204 5 1876 436 250 127 6 chr1 169254732 169254889 -27940543 + Charlie1b DNA MER1_type 7 182 -341 5 1876 617 264 28 0 chr1 169255058 169255202 -27940230 - RSINE1 SINE B4 -16 149 2 5 1876 668 164 116 181 chr1 169255275 169255491 -27939941 - B3 SINE B2 -14 202 1 5 1876 600 14 0 0 chr1 169255499 169255568 -27939864 + (TATTG)n Simple_repeat Simple_repeat 2 70 0 5 1876 608 164 0 33 chr1 169255574 169255694 -27939738 - B1_Mur1 SINE Alu -1 148 33 5 1876 274 182 95 74 chr1 169255620 169255715 -27939717 - MT2B LTR ERVL -345 256 160 5 1876 1218 54 0 0 chr1 169256611 169256758 -27938674 + B1_Mus2 SINE Alu 1 147 0 5 1876 1399 219 248 26 chr1 169257043 169257548 -27937884 - Lx8 LINE L1 -33 7440 6824 6 1876 415 190 99 10 chr1 169257973 169258074 -27937358 - PB1D10 SINE Alu -7 110 1 6 1876 222 37 0 0 chr1 169258089 169258116 -27937316 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1876 1152 36 0 7 chr1 169258118 169258259 -27937173 - B1_Mus2 SINE Alu -6 141 2 6 1876 30 69 0 0 chr1 169258465 169258523 -27936909 + AT_rich Low_complexity Low_complexity 1 58 0 6 1876 393 277 39 10 chr1 169258774 169258876 -27936556 - PB1D10 SINE Alu -9 108 4 6 1876 384 267 112 0 chr1 169259133 169259294 -27936138 + Tigger13a DNA MER2_type 170 348 -423 6 1876 819 129 83 0 chr1 169259523 169259655 -27935777 + B1_Mur3 SINE Alu 5 147 -2 6 1876 257 155 0 17 chr1 169259665 169259724 -27935708 + GA-rich Low_complexity Low_complexity 1 58 0 6 1876 525 32 0 0 chr1 169259813 169259876 -27935556 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1876 252 0 0 0 chr1 169259944 169259972 -27935460 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1876 1081 99 0 0 chr1 169259977 169260119 -27935313 - B1_Mus1 SINE Alu -5 143 2 6 1876 850 290 66 48 chr1 169260968 169261363 -27934069 - MTD LTR MaLR 0 419 18 6 1876 942 35 0 0 chr1 169261744 169261858 -27933574 + (CA)n Simple_repeat Simple_repeat 1 114 0 6 1876 230 321 13 13 chr1 169262046 169262125 -27933307 - ID2 SINE ID -4 79 1 6 1876 225 0 0 0 chr1 169262372 169262397 -27933035 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1876 186 204 45 0 chr1 169262577 169262621 -27932811 + MIR SINE MIR 107 152 -110 6 1876 245 273 56 11 chr1 169263077 169263166 -27932266 + RSINE1 SINE B4 73 165 0 6 1876 326 243 61 35 chr1 169263224 169263339 -27932093 + PB1D7 SINE Alu 1 118 -2 6 1876 256 230 39 51 chr1 169264312 169264390 -27931042 + PB1 SINE Alu 6 82 -45 6 1876 1239 54 0 0 chr1 169264428 169264576 -27930856 - B1_Mus1 SINE Alu 0 148 1 6 1876 1197 56 0 0 chr1 169265743 169265887 -27929545 + B1_Mus1 SINE Alu 1 144 -4 6 1876 335 239 63 18 chr1 169265953 169266064 -27929368 + PB1D10 SINE Alu 1 116 -1 6 1876 408 274 10 0 chr1 169266568 169266670 -27928762 + MTE2b LTR MaLR 1 103 -276 6 1876 340 344 30 0 chr1 169266686 169266817 -27928615 + MTE2b LTR MaLR 160 294 -85 6 1876 225 271 47 0 chr1 169267101 169267186 -27928246 + L1MA9 LINE L1 6178 6266 -46 6 1876 709 224 108 11 chr1 169267209 169267394 -27928038 - B3 SINE B2 -13 203 1 6 1876 1119 117 147 0 chr1 169268126 169268323 -27927109 - URR1A DNA MER1_type 0 226 1 6 1876 1009 23 0 15 chr1 169268480 169268614 -27926818 + B1_Mus1 SINE Alu 16 147 -1 6 1876 1597 36 0 5 chr1 169268616 169268809 -27926623 + B2_Mm1a SINE B2 1 192 -1 6 1876 1107 58 7 0 chr1 169268839 169268976 -27926456 + B1_Mm SINE Alu 1 138 -9 6 1876 278 26 0 25 chr1 169268976 169269016 -27926416 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1876 291 247 2 12 chr1 169269212 169269293 -27926139 + ID4 SINE ID 10 90 -62 6 1876 877 166 153 6 chr1 169269354 169269530 -27925902 + B3 SINE B2 1 202 -14 6 1876 1507 174 104 82 chr1 169269530 169269906 -27925526 - ORR1C2 LTR MaLR 0 384 1 6 1876 1297 173 11 5 chr1 169270115 169270397 -27925035 - MTC LTR MaLR -2 419 133 6 1876 1397 114 25 18 chr1 169270397 169270674 -27924758 - LSU-rRNA_Hsa rRNA rRNA -64 4971 4693 6 1876 993 180 29 20 chr1 169270686 169270890 -27924542 - RMER1C Other Other -111 1231 1026 6 1876 1052 76 0 0 chr1 169270894 169271039 -27924393 + B2_Mm2 SINE B2 5 149 -46 6 1876 254 29 29 0 chr1 169271042 169271077 -27924355 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1876 2591 260 22 8 chr1 169271094 169271766 -27923666 - RMER1C Other Other -298 1044 261 6 1876 847 152 94 17 chr1 169271793 169271973 -27923459 - MTC LTR MaLR -201 220 27 6 1876 793 164 0 15 chr1 169271977 169272113 -27923319 + RMER15 LTR ERVL 442 575 0 6 1876 370 288 53 60 chr1 169272432 169272565 -27922867 + RSINE1 SINE B4 2 133 -32 6 1876 538 82 0 0 chr1 169272695 169272780 -27922652 - L1Md_F3 LINE L1 -4 6580 6496 6 1876 1270 14 7 0 chr1 169272920 169273065 -27922367 - B1_Mus2 SINE Alu 0 147 2 6 1876 335 364 8 0 chr1 169273145 169273263 -27922169 - B4A SINE B4 -8 284 166 6 1876 929 112 28 7 chr1 169273456 169273600 -27921832 + B1_Mus2 SINE Alu 1 147 0 6 1876 273 311 8 8 chr1 169273602 169273722 -27921710 + HAL1 LINE L1 2014 2133 -374 6 1876 277 344 77 5 chr1 169273722 169273918 -27921514 - MER34 LTR ERV1 -12 530 321 6 1876 258 254 15 0 chr1 169274023 169274090 -27921342 - MER34 LTR ERV1 -399 143 76 6 1876 241 298 75 0 chr1 169274121 169274215 -27921217 + MIRb SINE MIR 69 169 -99 6 1876 276 175 10 0 chr1 169274289 169274371 -27921061 + PB1 SINE Alu 30 124 -3 6 1876 344 306 67 24 chr1 169274466 169274630 -27920802 - MLT1A1 LTR MaLR -216 192 22 6 1876 189 0 0 0 chr1 169274861 169274882 -27920550 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1876 530 220 3 27 chr1 169274905 169275044 -27920388 + L1MA4 LINE L1 5813 5949 -222 6 1876 233 315 128 0 chr1 169275289 169275438 -27919994 + MLT1A0 LTR MaLR 198 365 0 6 1876 1267 27 0 0 chr1 169275515 169275662 -27919770 + B1_Mm SINE Alu 1 147 0 6 1876 21 0 0 0 chr1 169275662 169275683 -27919749 + AT_rich Low_complexity Low_complexity 1 21 0 6 1876 476 135 31 33 chr1 169275711 169275810 -27919622 + PB1D7 SINE Alu 21 120 0 6 1876 360 0 0 0 chr1 169275963 169276003 -27919429 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 6 1876 1440 88 5 0 chr1 169276115 169276307 -27919125 - B2_Mm1a SINE B2 0 193 1 6 1876 551 126 95 0 chr1 169276620 169276715 -27918717 - B1_Mur2 SINE Alu -4 145 42 6 1876 981 105 30 18 chr1 169276884 169277049 -27918383 + B2_Mm2 SINE B2 2 168 -27 6 1876 485 131 12 0 chr1 169277329 169277413 -27918019 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 1876 1062 283 67 14 chr1 169277965 169278262 -27917170 - MTEa LTR MaLR -60 319 7 6 1876 310 89 449 0 chr1 169278297 169278397 -27917035 - B2_Mm2 SINE B2 -4 191 47 6 1876 1167 98 23 6 chr1 169278410 169278585 -27916847 - B2_Mm1t SINE B2 -14 179 2 6 1876 1000 0 0 0 chr1 169279156 169279262 -27916170 + U6 snRNA snRNA 2 107 0 6 1876 4238 63 0 4 chr1 169279262 169279785 -27915647 + L1_Mus1 LINE L1 6047 6567 0 6 1876 445 253 76 40 chr1 169281032 169281229 -27914203 - L1MA9 LINE L1 -77 6257 6041 6 1876 1396 68 21 16 chr1 169281722 169281916 -27913516 - B2_Mm2 SINE B2 0 195 1 6 1876 1209 120 11 5 chr1 169282171 169282355 -27913077 - B2_Mm1a SINE B2 -5 188 4 6 1876 1301 73 33 17 chr1 169283052 169283233 -27912199 - B2_Mm2 SINE B2 -9 186 3 6 1876 799 308 17 17 chr1 169283324 169283615 -27911817 - B4A SINE B4 0 292 2 6 1876 251 234 97 63 chr1 169284768 169284906 -27910526 + MIRb SINE MIR 96 228 -34 6 1876 948 291 0 0 chr1 169284967 169285170 -27910262 + ID_B1 SINE B4 2 204 -20 6 1876 776 228 0 26 chr1 169285323 169285476 -27909956 - B1_Mur2 SINE Alu 0 149 1 6 1876 1077 201 9 32 chr1 169285480 169285701 -27909731 - B3 SINE B2 0 216 1 6 1876 234 295 49 49 chr1 169286215 169286297 -27909135 + MIRb SINE MIR 122 207 -61 6 1876 612 279 6 42 chr1 169286375 169286540 -27908892 - B3 SINE B2 -1 215 57 6 1876 893 181 171 0 chr1 169287741 169287934 -27907498 - URR1A DNA MER1_type 0 226 1 6 1876 270 0 0 0 chr1 169288102 169288132 -27907300 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1876 670 206 102 41 chr1 169288461 169288658 -27906774 - B3 SINE B2 -5 211 3 6 1876 413 218 139 0 chr1 169288765 169288866 -27906566 - PB1D10 SINE Alu -2 115 1 6 1876 354 313 23 8 chr1 169288890 169289022 -27906410 - L1MC4 LINE L1 -1134 6908 6775 6 1876 257 262 0 58 chr1 169289023 169289092 -27906340 + ID4_ SINE ID 3 67 -16 6 1876 185 213 21 21 chr1 169289106 169289154 -27906278 - L2 LINE L2 -3291 128 81 6 1876 504 0 0 0 chr1 169289278 169289334 -27906098 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1876 489 202 16 121 chr1 169289337 169289461 -27905971 - B1_Mus1 SINE Alu -34 114 4 6 1876 710 105 17 17 chr1 169289571 169289687 -27905745 - BC1_Mm scRNA scRNA -36 116 1 6 1876 1189 41 0 26 chr1 169289777 169289928 -27905504 + B1_Mus2 SINE Alu 1 147 0 6 1876 318 50 0 0 chr1 169289928 169289968 -27905464 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1876 324 330 118 26 chr1 169289981 169290473 -27904959 - L1MC4 LINE L1 -1519 6363 5827 6 1876 376 133 132 11 chr1 169290620 169290711 -27904721 - PB1D9 SINE Alu -17 103 2 6 1876 22 0 0 0 chr1 169290969 169290991 -27904441 + AT_rich Low_complexity Low_complexity 1 22 0 6 1876 1027 128 207 0 chr1 169290991 169291170 -27904262 - B3 SINE B2 0 216 1 6 1876 1410 130 10 0 chr1 169291225 169291433 -27903999 + B3 SINE B2 2 211 -5 6 1876 1226 71 11 23 chr1 169292409 169292569 -27902863 + B2_Mm2 SINE B2 1 161 -34 6 1876 306 0 0 0 chr1 169292569 169292603 -27902829 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 1876 1226 71 11 23 chr1 169292603 169292616 -27902816 + B2_Mm2 SINE B2 162 172 -23 6 1876 378 278 184 7 chr1 169292813 169292965 -27902467 + L1ME4a LINE L1 5852 6030 -94 6 1876 219 340 54 27 chr1 169292998 169293110 -27902322 + MER5A DNA MER1_type 34 148 -41 6 1876 845 195 0 156 chr1 169293839 169294070 -27901362 - B3A SINE B2 -2 196 2 6 1876 247 313 45 0 chr1 169295054 169295121 -27900311 - ID4 SINE ID -9 74 5 6 1876 220 259 85 17 chr1 169295217 169295276 -27900156 + RSINE1 SINE B4 97 159 -6 6 1876 366 290 128 11 chr1 169295368 169295556 -27899876 - L1M4 LINE L1 -1027 5119 4910 7 1876 1225 62 0 0 chr1 169295608 169295754 -27899678 - B1_Mus2 SINE Alu 0 147 2 7 1876 686 237 89 16 chr1 169297112 169297304 -27898128 - ID_B1 SINE B4 -15 209 5 7 1876 835 184 0 0 chr1 169298045 169298181 -27897251 + B1_Mus1 SINE Alu 1 136 -12 7 1876 183 42 0 0 chr1 169298181 169298205 -27897227 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 7 1876 255 333 27 14 chr1 169298298 169298371 -27897061 + RSINE1 SINE B4 6 79 -86 7 1876 279 240 260 0 chr1 169299497 169299601 -27895831 + MER5A1 DNA MER1_type 14 144 -22 7 1876 391 320 39 0 chr1 169299781 169299909 -27895523 - MER3 DNA MER1_type -71 138 6 7 1876 349 291 74 7 chr1 169299971 169300120 -27895312 - RSINE1 SINE B4 -2 163 5 7 1876 318 195 62 49 chr1 169300313 169300394 -27895038 + ORR1E LTR MaLR 20 101 -258 7 1876 1206 184 32 5 chr1 169300752 169300970 -27894462 + URR1A DNA MER1_type 3 226 0 7 1876 272 322 138 22 chr1 169301523 169301704 -27893728 + MER3 DNA MER1_type 8 209 0 7 1876 868 168 193 11 chr1 169301826 169302007 -27893425 - B3 SINE B2 0 216 3 7 1876 180 45 0 0 chr1 169302008 169302030 -27893402 + MIR SINE MIR 124 145 -63 7 1876 299 266 271 42 chr1 169302117 169302235 -27893197 - RSINE1 SINE B4 0 165 21 7 1876 29 0 0 0 chr1 169302539 169302568 -27892864 + AT_rich Low_complexity Low_complexity 1 29 0 7 1876 246 297 219 21 chr1 169303056 169303244 -27892188 + MIR SINE MIR 33 255 -7 7 1876 750 180 292 0 chr1 169303326 169303487 -27891945 - B3 SINE B2 -8 208 1 7 1876 616 154 96 0 chr1 169303563 169303667 -27891765 + B1_Mur4 SINE Alu 37 150 0 7 1876 28 29 0 0 chr1 169303681 169303716 -27891716 + AT_rich Low_complexity Low_complexity 1 35 0 7 1876 635 183 35 0 chr1 169303722 169303837 -27891595 + B3A SINE B2 1 119 -79 7 1876 198 310 204 14 chr1 169304988 169305224 -27890208 + L2a LINE L2 3082 3361 -65 7 1876 875 141 6 75 chr1 169305680 169305841 -27889591 + B1_Mur4 SINE Alu 1 150 0 7 1876 550 290 101 20 chr1 169306111 169306382 -27889050 + ORR1E LTR MaLR 18 322 -48 7 1876 204 40 0 0 chr1 169306389 169306414 -27889018 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1876 1160 199 115 104 chr1 169306470 169306845 -27888587 + MTE2a LTR MaLR 1 379 0 7 1876 989 108 7 26 chr1 169306860 169307012 -27888420 - B1_Mur4 SINE Alu -1 149 1 7 1876 477 296 75 44 chr1 169307093 169307252 -27888180 - RSINE1 SINE B4 0 165 2 7 1876 728 272 122 29 chr1 169308677 169308923 -27886509 + B4A SINE B4 2 270 -22 7 1876 291 222 14 27 chr1 169308954 169309028 -27886404 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1876 219 150 16 32 chr1 169309157 169309219 -27886213 + CT-rich Low_complexity Low_complexity 3 63 0 7 1876 619 268 0 37 chr1 169309269 169309432 -27886000 - RSINE1 SINE B4 -4 161 5 7 1876 577 282 0 47 chr1 169309445 169309594 -27885838 - B1F SINE Alu -7 142 1 7 1876 251 136 23 0 chr1 169310184 169310228 -27885204 + L1ME2z LINE L1 6224 6268 -176 7 1876 281 264 14 14 chr1 169310610 169310683 -27884749 + 4.5SRNA scRNA scRNA 1 73 -21 7 1876 834 233 205 26 chr1 169310708 169310942 -27884490 + B4 SINE B4 3 278 -14 7 1876 893 226 53 24 chr1 169311295 169311504 -27883928 + B3 SINE B2 2 216 0 7 1876 2334 283 120 25 chr1 169312434 169313385 -27882047 + Lx9 LINE L1 6584 7624 -20 7 1876 1220 103 11 11 chr1 169314101 169314277 -27881155 + B2_Mm2 SINE B2 1 176 -19 7 1876 403 259 128 14 chr1 169314808 169314949 -27880483 - MER5A DNA MER1_type -32 157 1 7 1876 936 242 43 14 chr1 169314954 169315164 -27880268 + B3 SINE B2 1 216 0 7 1876 458 321 64 18 chr1 169315872 169316043 -27879389 - MIR SINE MIR -79 183 5 7 1876 566 266 67 46 chr1 169316293 169316533 -27878899 - L1M4 LINE L1 -1899 4247 4003 7 1876 357 24 0 0 chr1 169316589 169316631 -27878801 + (TATG)n Simple_repeat Simple_repeat 3 44 0 7 1876 2083 118 9 104 chr1 169316786 169317230 -27878202 - RMER17C LTR ERVK -8 402 1 7 1876 221 300 0 0 chr1 169318537 169318597 -27876835 - B1F2 SINE Alu -87 62 3 7 1876 502 201 32 154 chr1 169319590 169319612 -27875820 - B4 SINE B4 -49 243 170 7 1876 1045 22 0 42 chr1 169319612 169319754 -27875678 - B1_Mus1 SINE Alu -1 147 12 7 1876 502 201 32 154 chr1 169319754 169319778 -27875654 - B4 SINE B4 -49 169 79 7 1876 433 309 132 30 chr1 169320091 169320288 -27875144 - MIR SINE MIR -25 237 21 7 1876 717 228 53 63 chr1 169320920 169320986 -27874446 - B3 SINE B2 0 216 163 7 1876 465 19 0 0 chr1 169320986 169321040 -27874392 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1876 717 228 53 63 chr1 169321040 169321179 -27874253 - B3 SINE B2 -54 162 13 7 1876 262 300 125 39 chr1 169321220 169321324 -27874108 + PB1D10 SINE Alu 3 115 -2 7 1876 425 266 222 19 chr1 169321612 169321694 -27873738 + B4 SINE B4 2 82 -210 7 1876 291 71 0 0 chr1 169321694 169321736 -27873696 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 7 1876 434 203 141 25 chr1 169321736 169321860 -27873572 + B4A SINE B4 83 250 -42 7 1876 22 0 0 0 chr1 169322008 169322030 -27873402 + AT_rich Low_complexity Low_complexity 1 22 0 7 1876 348 43 0 0 chr1 169322171 169322217 -27873215 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1876 374 288 27 0 chr1 169322315 169322426 -27873006 - PB1D10 SINE Alu -2 115 2 7 1876 192 135 0 0 chr1 169323959 169323996 -27871436 + (CCCCG)n Simple_repeat Simple_repeat 2 38 0 7 1876 207 0 0 0 chr1 169324664 169324687 -27870745 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1876 236 93 136 23 chr1 169324796 169324840 -27870592 - RMER5 LTR ERV1 -32 502 454 7 1876 531 305 159 55 chr1 169324854 169325180 -27870252 - RMER5 LTR ERV1 -129 405 46 7 1876 396 271 27 45 chr1 169325250 169325362 -27870070 - ID_B1 SINE B4 -29 195 86 7 1876 374 344 6 38 chr1 169325846 169325865 -27869567 + ID_B1 SINE B4 64 215 -9 7 1876 693 232 7 0 chr1 169325865 169326003 -27869429 + B1_Mur2 SINE Alu 2 140 -9 7 1876 369 308 169 0 chr1 169326303 169326475 -27868957 - L1M5 LINE L1 -338 5786 5586 7 1876 352 300 90 16 chr1 169327164 169327286 -27868146 + MTD LTR MaLR 5 135 -284 7 1876 353 299 118 0 chr1 169327253 169327380 -27868052 - B1F2 SINE Alu -7 142 1 7 1876 203 103 26 0 chr1 169327566 169327605 -27867827 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1876 2085 81 83 46 chr1 169328080 169328428 -27867004 - RLTR10B2 LTR ERVK 0 365 5 7 1876 225 91 0 0 chr1 169328459 169328492 -27866940 - RLTR10B LTR ERVK -248 44 12 7 1876 333 48 0 0 chr1 169328523 169328565 -27866867 - RLTR10B LTR ERVK -250 42 1 7 1876 7299 54 2 34 chr1 169328565 169329491 -27865941 - MMERVK10C-int LTR ERVK 0 7581 6685 7 1876 215 31 31 0 chr1 169329493 169329525 -27865907 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1876 265 116 0 0 chr1 169329528 169329571 -27865861 - MMERVK10C-int LTR ERVK -888 6693 6651 7 1876 2663 105 19 7 chr1 169329562 169329973 -27865459 - MMERVK10C-int LTR ERVK -1771 5810 5002 7 1876 445 294 41 41 chr1 169329983 169330203 -27865229 - MMERVK10C-int LTR ERVK -6015 1566 1347 7 1876 2576 13 115 9 chr1 169330198 169330536 -27864896 - MMERVK10C-int LTR ERVK -1074 913 553 7 1876 219 183 14 40 chr1 169330536 169330610 -27864822 + CT-rich Low_complexity Low_complexity 3 74 0 7 1876 2252 49 0 0 chr1 169330686 169330953 -27864479 - MMERVK10C-int LTR ERVK -7314 267 1 7 1876 2076 84 83 46 chr1 169330953 169331301 -27864131 - RLTR10B2 LTR ERVK 0 365 5 7 1876 333 48 0 0 chr1 169331398 169331440 -27863992 - RLTR10B LTR ERVK -250 42 1 7 1876 246 195 60 83 chr1 169331597 169331681 -27863751 + L1MC4a LINE L1 6724 6805 -1190 7 1876 687 242 108 0 chr1 169331865 169332022 -27863410 + ID_B1 SINE B4 46 219 -5 7 1876 315 378 0 26 chr1 169332024 169332138 -27863294 + PB1D10 SINE Alu 7 117 0 7 1876 324 227 15 0 chr1 169332340 169332406 -27863026 + L1MC4a LINE L1 7815 7881 -1 7 1876 607 182 45 9 chr1 169332698 169332809 -27862623 + B3A SINE B2 1 115 -83 7 1876 765 300 14 34 chr1 169332918 169333125 -27862307 + B3 SINE B2 2 204 -12 7 1876 1340 101 16 5 chr1 169333837 169334027 -27861405 - B2_Mm2 SINE B2 -3 192 1 7 1876 687 167 71 14 chr1 169334031 169334171 -27861261 - B1_Mus1 SINE Alu 0 148 1 7 1876 2145 101 6 0 chr1 169334212 169334529 -27860903 - ORR1A2 LTR MaLR -8 319 1 7 1876 310 244 86 32 chr1 169334907 169335000 -27860432 - PB1D10 SINE Alu -9 108 11 7 1876 257 255 129 30 chr1 169334917 169335018 -27860414 - ID_B1 SINE B4 -45 179 69 7 1876 806 253 223 10 chr1 169335164 169335456 -27859976 - MLT1B LTR MaLR -33 357 4 7 1876 224 188 40 40 chr1 169336422 169336472 -27858960 - MIRm SINE MIR -192 84 35 7 1876 910 259 19 5 chr1 169336487 169336693 -27858739 - B3 SINE B2 -6 210 2 7 1876 252 360 122 18 chr1 169337257 169337421 -27858011 - MIRb SINE MIR -37 231 51 7 1876 1907 136 96 8 chr1 169338424 169338788 -27856644 + MTC LTR MaLR 5 400 -21 7 1876 225 291 43 43 chr1 169340837 169340952 -27854480 + MARNA DNA Mariner 410 524 -62 7 1876 335 210 62 0 chr1 169340965 169341046 -27854386 - PB1D7 SINE Alu -7 113 28 7 1876 506 279 152 19 chr1 169341413 169341669 -27853763 - B4 SINE B4 -2 290 1 7 1876 726 283 40 0 chr1 169341702 169341900 -27853532 + B3 SINE B2 1 206 -10 7 1876 291 299 209 34 chr1 169343419 169343654 -27851778 - B4A SINE B4 -16 276 1 7 1876 588 286 63 30 chr1 169343996 169344295 -27851137 - MER33 DNA MER1_type -6 318 10 7 1876 1083 117 0 0 chr1 169344458 169344621 -27850811 + B2_Mm2 SINE B2 2 164 -31 7 1877 311 105 0 17 chr1 169345710 169345768 -27849664 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1877 5988 64 10 12 chr1 169345896 169346670 -27848762 + L1Md_F2 LINE L1 5810 6582 0 7 1877 644 288 125 0 chr1 169347688 169347872 -27847560 + ID_B1 SINE B4 2 208 -16 7 1877 952 147 6 11 chr1 169347876 169348055 -27847377 + GA-rich Low_complexity Low_complexity 3 180 0 7 1877 245 354 0 50 chr1 169348068 169348082 -27847350 - ID_B1 SINE B4 -128 96 60 7 1877 300 279 0 0 chr1 169348082 169348150 -27847282 - ID4_ SINE ID -1 82 15 8 1877 245 354 0 50 chr1 169348150 169348169 -27847263 - ID SINE ID -128 59 1 7 1877 207 0 0 0 chr1 169348187 169348210 -27847222 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1877 612 290 98 29 chr1 169348211 169348527 -27846905 - Lx9 LINE L1 0 7644 7307 8 1877 1149 58 0 0 chr1 169348617 169348756 -27846676 - B1_Mus2 SINE Alu -8 139 1 8 1877 1041 88 0 26 chr1 169348795 169348946 -27846486 - B1_Mus2 SINE Alu 0 147 1 8 1877 543 238 137 60 chr1 169348953 169349136 -27846296 - B3A SINE B2 0 198 2 8 1877 1604 47 0 10 chr1 169349427 169349620 -27845812 - B2_Mm1t SINE B2 -2 191 1 8 1877 26 0 0 0 chr1 169350559 169350585 -27844847 + AT_rich Low_complexity Low_complexity 1 26 0 8 1877 342 0 0 0 chr1 169350585 169350623 -27844809 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1877 425 336 127 37 chr1 169350650 169350894 -27844538 - B4A SINE B4 -24 268 3 8 1877 926 248 9 18 chr1 169350921 169351139 -27844293 - B3 SINE B2 0 216 1 8 1877 288 77 0 0 chr1 169351165 169351204 -27844228 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1877 818 161 34 20 chr1 169351208 169351354 -27844078 - B1_Mur4 SINE Alu 0 150 3 8 1877 399 294 25 25 chr1 169351514 169351636 -27843796 - RSINE1 SINE B4 0 165 44 8 1877 390 327 72 14 chr1 169351794 169352070 -27843362 + LTR90B LTR LTR 3 294 -502 8 1877 236 315 67 27 chr1 169352104 169352254 -27843178 - MIRb SINE MIR -22 246 91 8 1877 287 290 103 97 chr1 169353482 169353772 -27841660 - B4A SINE B4 0 292 1 8 1877 644 246 45 35 chr1 169353823 169354025 -27841407 - B3 SINE B2 -11 205 2 8 1877 1030 282 51 49 chr1 169354277 169354348 -27841084 - MLT1A0 LTR MaLR -5 360 294 8 1877 1675 27 0 0 chr1 169354348 169354536 -27840896 + B2_Mm1a SINE B2 1 188 -5 8 1877 1030 282 51 49 chr1 169354536 169354814 -27840618 - MLT1A0 LTR MaLR -72 293 10 8 1877 858 266 112 15 chr1 169355133 169355393 -27840039 - B4A SINE B4 -6 286 2 8 1877 218 182 0 0 chr1 169355614 169355647 -27839785 + ID_B1 SINE B4 83 115 -109 8 1877 2908 166 81 6 chr1 169355869 169356397 -27839035 + RMER1B Other Other 499 1066 0 8 1877 567 155 0 0 chr1 169356470 169356573 -27838859 + (TA)n Simple_repeat Simple_repeat 2 104 0 8 1877 254 293 77 8 chr1 169356777 169356894 -27838538 - MARNA DNA Mariner -277 309 185 8 1877 303 93 0 0 chr1 169358219 169358262 -27837170 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1877 453 265 16 33 chr1 169358288 169358409 -27837023 - B4A SINE B4 -83 209 91 8 1877 603 0 0 0 chr1 169358411 169358478 -27836954 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 8 1877 5886 188 48 67 chr1 169358485 169359154 -27836278 - Lx9 LINE L1 -1 7643 6985 8 1877 814 212 11 32 chr1 169359154 169359339 -27836093 - B3A SINE B2 -16 182 2 8 1877 5886 188 48 67 chr1 169359339 169359990 -27835442 - Lx9 LINE L1 -660 6984 6348 8 1877 380 190 0 71 chr1 169360014 169360099 -27835333 - B4A SINE B4 -206 86 8 8 1877 235 222 284 0 chr1 169360572 169360653 -27834779 + RSINE1 SINE B4 45 148 -17 8 1877 338 262 122 0 chr1 169360722 169360829 -27834603 + MIRb SINE MIR 34 153 -115 8 1877 494 230 112 27 chr1 169362009 169362252 -27833180 - L1MB5 LINE L1 -102 6077 5816 8 1877 275 307 11 0 chr1 169362332 169362420 -27833012 - L1MB5 LINE L1 -410 5768 5680 8 1877 305 341 0 36 chr1 169362507 169362647 -27832785 + C-rich Low_complexity Low_complexity 6 140 0 8 1877 818 179 3 7 chr1 169362647 169362917 -27832515 + CT-rich Low_complexity Low_complexity 1 269 0 8 1877 451 265 31 22 chr1 169362992 169363185 -27832247 - L1MB5 LINE L1 -656 5518 5312 8 1877 865 201 23 1 chr1 169363185 169363391 -27832041 - B3A SINE B2 -7 209 1 8 1877 378 0 0 0 chr1 169363508 169363550 -27831882 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1877 1140 305 72 43 chr1 169363980 169364547 -27830885 - L1MB5 LINE L1 -867 5279 4714 8 1877 792 277 31 55 chr1 169364547 169364837 -27830595 + B4 SINE B4 3 285 -7 8 1877 1140 305 72 43 chr1 169364837 169365080 -27830352 - L1MB5 LINE L1 -1433 4713 4446 8 1877 313 321 82 13 chr1 169365570 169365728 -27829704 - MIRb SINE MIR -76 192 24 8 1877 389 245 38 42 chr1 169366437 169366587 -27828845 + MTD LTR MaLR 142 301 -120 8 1877 514 219 14 49 chr1 169366623 169366767 -27828665 + MTD LTR MaLR 267 405 -14 8 1877 216 215 44 44 chr1 169367951 169368019 -27827413 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 8 1877 540 73 0 0 chr1 169369247 169369329 -27826103 + (GA)n Simple_repeat Simple_repeat 1 82 0 8 1877 213 196 0 0 chr1 169369548 169369599 -27825833 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1877 773 273 25 46 chr1 169369628 169369912 -27825520 - B4A SINE B4 -14 278 1 8 1877 464 0 18 0 chr1 169370930 169370986 -27824446 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 8 1877 1191 22 0 0 chr1 169370986 169371121 -27824311 - B1_Mus2 SINE Alu -12 135 1 8 1877 4668 94 23 17 chr1 169371939 169372642 -27822790 + L1_Mus3 LINE L1 5932 6638 0 8 1877 34 55 0 0 chr1 169372715 169372770 -27822662 + AT_rich Low_complexity Low_complexity 1 55 0 8 1877 216 93 22 44 chr1 169373168 169373213 -27822219 + (GGGTG)n Simple_repeat Simple_repeat 2 45 0 8 1877 243 222 47 16 chr1 169373698 169373762 -27821670 + RMER1C Other Other 1265 1330 -12 8 1877 255 302 114 42 chr1 169373771 169373964 -27821468 + MIRb SINE MIR 22 231 -37 8 1877 362 274 88 38 chr1 169374019 169374127 -27821305 + L1MD3 LINE L1 7730 7839 -156 8 1877 834 167 21 0 chr1 169374127 169374271 -27821161 + B1_Mus2 SINE Alu 1 147 0 8 1877 362 274 88 38 chr1 169374271 169374401 -27821031 + L1MD3 LINE L1 7840 7980 -15 8 1877 190 342 9 27 chr1 169374431 169374542 -27820890 - MIR SINE MIR -69 193 85 8 1877 392 271 146 0 chr1 169376336 169376480 -27818952 + MER5A1 DNA MER1_type 2 166 0 8 1877 317 253 40 64 chr1 169379608 169379781 -27815651 - L1M5 LINE L1 -3289 2857 2689 8 1877 270 0 0 0 chr1 169379880 169379910 -27815522 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1877 441 0 0 0 chr1 169379910 169379958 -27815474 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 1877 751 212 165 20 chr1 169380000 169380255 -27815177 - B4A SINE B4 0 292 1 8 1877 217 367 25 0 chr1 169381657 169381736 -27813696 - ID4_ SINE ID -2 81 1 8 1877 362 267 57 36 chr1 169381746 169381886 -27813546 - B1F1 SINE Alu -6 143 1 8 1877 523 223 0 69 chr1 169382290 169382420 -27813012 + MTD LTR MaLR 1 121 -298 8 1877 1309 68 73 0 chr1 169382961 169383138 -27812294 - B2_Mm1a SINE B2 -2 191 2 8 1877 488 299 0 39 chr1 169383485 169383638 -27811794 - B1F SINE Alu -1 148 2 8 1877 333 284 0 0 chr1 169384127 169384201 -27811231 + ID4 SINE ID 2 75 -8 8 1877 220 333 18 0 chr1 169385491 169385548 -27809884 - ID4 SINE ID -9 74 17 8 1877 627 204 1 59 chr1 169385577 169385735 -27809697 - B1F2 SINE Alu -1 149 1 8 1877 2092 119 35 3 chr1 169387098 169387417 -27808015 - ORR1A4 LTR MaLR 0 329 1 8 1877 907 150 40 60 chr1 169388948 169389147 -27806285 + B2_Mm2 SINE B2 1 195 0 8 1877 234 313 52 9 chr1 169389522 169389638 -27805794 + MLT1A0 LTR MaLR 26 146 -219 8 1877 243 286 22 0 chr1 169389764 169389855 -27805577 + MTEb LTR MaLR 279 371 -8 8 1877 214 170 57 0 chr1 169389872 169389925 -27805507 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 8 1877 439 294 78 11 chr1 169389986 169390165 -27805267 - MER3 DNA MER1_type -9 200 10 8 1877 3454 30 5 0 chr1 169390975 169391369 -27804063 + MTA_Mm LTR MaLR 1 396 0 8 1877 583 280 15 50 chr1 169391947 169392146 -27803286 - MIRb SINE MIR -12 256 65 8 1877 710 237 78 29 chr1 169392455 169392659 -27802773 - B3 SINE B2 -2 214 1 8 1877 218 273 0 15 chr1 169393181 169393248 -27802184 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1877 212 300 0 0 chr1 169393247 169393297 -27802135 + polypurine Low_complexity Low_complexity 2 51 0 8 1877 275 266 103 26 chr1 169394445 169394561 -27800871 + Lx8 LINE L1 7065 7189 -284 8 1877 644 272 14 0 chr1 169394565 169394712 -27800720 + Lx8 LINE L1 7150 7298 -175 8 1877 396 0 0 0 chr1 169394741 169394785 -27800647 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1877 263 217 0 32 chr1 169395161 169395223 -27800209 + MER96 DNA hAT 13 72 -103 8 1877 195 42 0 0 chr1 169397665 169397689 -27797743 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1877 317 148 74 0 chr1 169398094 169398148 -27797284 + MIRm SINE MIR 219 276 0 8 1877 21 0 0 0 chr1 169398431 169398452 -27796980 + AT_rich Low_complexity Low_complexity 1 21 0 8 1877 573 120 0 0 chr1 169398729 169398821 -27796611 + (TG)n Simple_repeat Simple_repeat 2 93 0 8 1877 501 273 57 31 chr1 169398832 169398991 -27796441 - RSINE1 SINE B4 0 165 3 8 1877 457 215 65 9 chr1 169400170 169400278 -27795154 + B1_Mur4 SINE Alu 3 116 -34 8 1877 288 0 0 0 chr1 169400335 169400367 -27795065 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 8 1877 349 197 0 0 chr1 169400367 169400433 -27794999 - B1_Mur3 SINE Alu -7 142 77 8 1877 387 218 51 0 chr1 169400801 169400879 -27794553 - ID4_ SINE ID 0 83 2 8 1877 494 168 311 57 chr1 169400902 169401079 -27794353 - ID_B1 SINE B4 -2 222 1 8 1877 288 0 0 0 chr1 169401109 169401141 -27794291 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 8 1877 1106 88 6 0 chr1 169401141 169401300 -27794132 - B2_Mm1a SINE B2 -33 160 1 8 1877 408 262 28 9 chr1 169401406 169401514 -27793918 + PB1D7 SINE Alu 1 110 -10 8 1877 197 65 32 0 chr1 169401540 169401571 -27793861 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 8 1877 229 143 0 0 chr1 169402092 169402127 -27793305 - MT2B LTR ERVL -314 287 253 8 1877 3176 135 22 6 chr1 169402131 169402669 -27792763 - ORR1A2-int LTR MaLR -1416 547 1 8 1877 2691 61 3 0 chr1 169402669 169402995 -27792437 - ORR1A2 LTR MaLR 0 327 1 8 1877 261 0 0 0 chr1 169403602 169403631 -27791801 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1877 647 312 44 31 chr1 169404424 169404652 -27790780 + B4A SINE B4 2 232 -60 8 1877 41453 14 1 6 chr1 169404933 169411137 -27784295 - L1Md_A LINE L1 -1 6581 416 9 1877 3229 40 2 37 chr1 169411424 169411834 -27783598 + MTA_Mm LTR MaLR 1 396 0 9 1877 1425 313 134 30 chr1 169412492 169413954 -27781478 + L1_Mur3 LINE L1 1356 2962 -2918 9 1877 261 287 10 87 chr1 169413978 169414081 -27781351 + B4 SINE B4 73 167 -125 9 1877 370 167 15 0 chr1 169414016 169414082 -27781350 + B1_Mur4 SINE Alu 18 84 -66 9 1877 276 169 23 125 chr1 169414082 169414099 -27781333 + MT2B LTR ERVL 179 252 -349 9 1877 355 232 15 0 chr1 169414209 169414296 -27781136 + B1_Mus1 SINE Alu 4 92 -28 9 1877 262 265 49 104 chr1 169414296 169414460 -27780972 + L1M2 LINE L1 5502 5656 -656 9 1877 1641 144 32 95 chr1 169414465 169414727 -27780705 + ORR1A3 LTR MaLR 1 269 -57 9 1877 2504 106 0 34 chr1 169414727 169415109 -27780323 + Lx LINE L1 6280 6648 -6 9 1877 1641 144 32 95 chr1 169415109 169415192 -27780240 + ORR1A3 LTR MaLR 270 324 -2 9 1877 2339 291 79 39 chr1 169415199 169416220 -27779212 + Lx8 LINE L1 5633 6848 -796 9 1877 763 202 89 0 chr1 169416231 169416399 -27779033 + Lx8 LINE L1 6769 6951 -522 9 1877 1214 208 11 68 chr1 169416417 169416696 -27778736 + Lx8 LINE L1 7073 7335 -138 9 1877 336 191 15 0 chr1 169416800 169416868 -27778564 + B4A SINE B4 218 286 -6 8 1877 1763 182 13 113 chr1 169417321 169417773 -27777659 - RMER1C Other Other -42 1300 894 9 1877 1061 57 7 0 chr1 169417795 169417936 -27777496 + (TTCTC)n Simple_repeat Simple_repeat 4 145 0 9 1877 363 44 0 0 chr1 169418327 169418372 -27777060 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1877 332 287 43 17 chr1 169418405 169418522 -27776910 - PB1D7 SINE Alu 0 120 1 9 1877 736 189 159 21 chr1 169419575 169419764 -27775668 - B3 SINE B2 0 216 2 9 1877 1248 170 65 112 chr1 169419774 169420204 -27775228 - RMER17C LTR ERVK 0 410 1 9 1877 236 254 16 16 chr1 169420281 169420345 -27775087 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1877 1481 209 122 21 chr1 169420460 169420659 -27774773 - MTD LTR MaLR 0 419 203 9 1877 186 43 0 0 chr1 169420659 169420682 -27774750 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 9 1877 1481 209 122 21 chr1 169420682 169420859 -27774573 - MTD LTR MaLR -217 202 6 9 1877 192 200 0 0 chr1 169421516 169421561 -27773871 + T-rich Low_complexity Low_complexity 1 45 0 9 1877 739 284 140 45 chr1 169422110 169422468 -27772964 - MTD LTR MaLR -14 405 14 9 1877 448 306 121 28 chr1 169422505 169422794 -27772638 - L2 LINE L2 -412 3007 2692 9 1877 242 301 67 52 chr1 169423027 169423237 -27772195 - L2 LINE L2 -1056 2363 2151 9 1877 428 77 15 0 chr1 169423644 169423709 -27771723 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1877 2149 46 71 3 chr1 169423785 169424067 -27771365 - L1Md_F3 LINE L1 0 6584 6284 9 1877 369 0 0 0 chr1 169424698 169424739 -27770693 + (TC)n Simple_repeat Simple_repeat 1 41 0 9 1877 228 35 0 0 chr1 169424739 169424767 -27770665 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1877 925 146 0 17 chr1 169425440 169425621 -27769811 + CT-rich Low_complexity Low_complexity 1 178 0 9 1877 298 298 52 17 chr1 169426023 169426139 -27769293 + MER2 DNA MER2_type 87 206 -139 9 1877 218 267 0 32 chr1 169426921 169426983 -27768449 + B4A SINE B4 12 71 -221 9 1877 272 48 24 0 chr1 169427240 169427282 -27768150 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1877 366 286 98 75 chr1 169431004 169431178 -27764254 + B4A SINE B4 2 179 -113 9 1877 374 239 53 50 chr1 169431181 169431360 -27764072 + L1MEf LINE L1 1896 2135 -4498 9 1877 888 102 17 22 chr1 169431787 169431968 -27763464 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 9 1877 446 182 20 0 chr1 169431968 169432067 -27763365 + CT-rich Low_complexity Low_complexity 3 103 0 9 1877 279 0 0 0 chr1 169432727 169432758 -27762674 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1877 281 186 17 0 chr1 169433169 169433228 -27762204 - MTE2b LTR MaLR -30 349 290 9 1877 429 20 0 0 chr1 169433973 169434023 -27761409 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1877 277 239 14 40 chr1 169434023 169434097 -27761335 - ID4_ SINE ID -10 73 2 9 1877 401 228 91 97 chr1 169434615 169434790 -27760642 - MER34A LTR ERV1 -394 177 4 9 1877 242 315 198 0 chr1 169434855 169434966 -27760466 - MIR SINE MIR -78 184 52 9 1877 225 243 12 86 chr1 169434983 169435064 -27760368 - L1MB7 LINE L1 -1 6183 6109 9 1877 284 315 43 0 chr1 169435204 169435296 -27760136 - L1MB7 LINE L1 -219 5965 5870 9 1877 289 305 12 0 chr1 169435322 169435404 -27760028 - ID4 SINE ID 0 83 1 9 1877 195 288 40 14 chr1 169435554 169435628 -27759804 - MER5A DNA MER1_type -32 157 82 9 1877 519 273 18 30 chr1 169435718 169435884 -27759548 - MER5A1 DNA MER1_type -2 164 1 9 1877 519 239 55 68 chr1 169436049 169436269 -27759163 + Tigger15a DNA TcMar 487 703 -12 9 1877 2269 130 91 8 chr1 169437830 169438203 -27757229 + Lx4A LINE L1 6653 7056 -2 9 1877 663 309 72 39 chr1 169438394 169438758 -27756674 - MLT1A1 LTR MaLR 0 408 1 9 1877 1122 199 41 9 chr1 169439426 169439644 -27755788 - URR1B DNA MER1_type 0 225 1 9 1877 180 0 0 0 chr1 169439820 169439840 -27755592 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9 1877 632 249 35 105 chr1 169440242 169440471 -27754961 - B3 SINE B2 -3 213 1 9 1877 270 294 137 22 chr1 169440884 169441023 -27754409 + MER5A DNA MER1_type 35 189 0 9 1877 468 0 0 0 chr1 169441185 169441237 -27754195 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1877 502 193 46 0 chr1 169441245 169441354 -27754078 - ID_B1 SINE B4 -25 199 86 9 1877 808 176 0 40 chr1 169441388 169441536 -27753896 - B1_Mur1 SINE Alu -7 142 1 9 1877 306 92 19 84 chr1 169441552 169441659 -27753773 + A-rich Low_complexity Low_complexity 2 101 0 9 1877 256 216 0 0 chr1 169441996 169442047 -27753385 - tRNA-Ala-GCY_ tRNA tRNA 0 75 25 9 1877 16328 41 11 11 chr1 169442739 169445437 -27749995 - L1Md_F2 LINE L1 -3 6579 3887 9 1877 230 257 95 0 chr1 169445986 169446060 -27749372 + MLT1J LTR MaLR 401 481 -31 9 1877 262 250 109 0 chr1 169446140 169446204 -27749228 + ID SINE ID 14 84 -140 9 1877 229 299 0 29 chr1 169446396 169446465 -27748967 - MIR SINE MIR -55 153 87 9 1877 238 378 24 0 chr1 169447188 169447270 -27748162 - RSINE1 SINE B4 -11 154 71 9 1877 239 301 34 120 chr1 169447280 169447397 -27748035 - B1_Mus2 SINE Alu -39 108 2 9 1877 377 316 29 71 chr1 169447397 169447470 -27747962 - B4A SINE B4 -215 77 12 9 1877 216 238 24 0 chr1 169448287 169448329 -27747103 - B1_Mus2 SINE Alu -103 44 2 9 1877 528 193 15 13 chr1 169448575 169448691 -27746741 - B4A SINE B4 -158 134 18 9 1877 263 265 0 14 chr1 169448632 169448701 -27746731 - B3A SINE B2 -123 75 8 9 1877 461 299 70 75 chr1 169448701 169448819 -27746613 - L1MB8 LINE L1 -258 5920 5819 9 1877 239 284 75 0 chr1 169448819 169448886 -27746546 - tRNA-Ala-GCY_ tRNA tRNA -2 73 2 9 1877 461 299 70 75 chr1 169448886 169449140 -27746292 - L1MB8 LINE L1 -360 5818 5550 9 1877 460 319 130 37 chr1 169449355 169449852 -27745580 - L1MB8 LINE L1 -120 6054 5482 9 1877 2816 198 83 62 chr1 169450146 169450944 -27744488 + RMER19B LTR ERVK 1 902 0 9 1877 215 31 0 30 chr1 169451640 169451673 -27743759 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 9 1877 1606 47 0 0 chr1 169452107 169452297 -27743135 + B2_Mm1a SINE B2 2 191 -2 9 1877 894 278 127 120 chr1 169452325 169452433 -27742999 - MLT1F1 LTR MaLR -7 562 480 9 1877 341 0 45 0 chr1 169452433 169452477 -27742955 + (TATG)n Simple_repeat Simple_repeat 4 49 0 9 1877 894 278 127 120 chr1 169452477 169452492 -27742940 - MLT1F1 LTR MaLR -90 479 472 9 1877 1015 241 77 15 chr1 169452492 169452753 -27742679 - B4 SINE B4 -14 278 2 9 1877 894 288 117 115 chr1 169452753 169453166 -27742266 - MLT1F1 LTR MaLR -98 471 14 9 1877 447 68 0 0 chr1 169453520 169453579 -27741853 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 9 1877 522 243 0 19 chr1 169453595 169453700 -27741732 - ID_B1 SINE B4 -19 205 103 9 1877 396 0 0 0 chr1 169453725 169453769 -27741663 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1877 662 316 51 25 chr1 169453772 169454009 -27741423 - B4A SINE B4 -26 266 24 9 1877 705 215 30 0 chr1 169454816 169454951 -27740481 - B1_Mur1 SINE Alu -6 143 5 9 1877 7400 124 9 6 chr1 169455011 169456869 -27738563 - Lx LINE L1 -13 6641 4770 9 1877 441 0 0 0 chr1 169456918 169456967 -27738465 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1877 1327 211 48 97 chr1 169457038 169457431 -27738001 - ORR1D1 LTR MaLR 0 374 1 9 1877 2506 160 62 12 chr1 169457529 169458009 -27737423 - RLTR11A LTR ERVK -5 523 1 9 1877 942 113 0 0 chr1 169458539 169458681 -27736751 + (TTC)n Simple_repeat Simple_repeat 3 144 0 9 1877 1134 61 0 0 chr1 169458702 169458849 -27736583 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 9 1877 917 154 21 0 chr1 169459202 169459345 -27736087 + B1_Mur4 SINE Alu 5 150 0 9 1877 898 156 19 25 chr1 169459813 169459971 -27735461 - RMER10A LTR ERVL -285 157 1 9 1877 4011 93 29 186 chr1 169460460 169461357 -27734075 + RMER6A LTR ERVK 1 756 0 9 1877 1501 253 75 11 chr1 169461397 169461745 -27733687 + ORR1D2 LTR MaLR 1 370 0 9 1877 379 285 133 42 chr1 169461767 169461932 -27733500 - B4A SINE B4 -111 181 2 9 1877 207 0 0 0 chr1 169462523 169462546 -27732886 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1877 344 363 32 0 chr1 169462549 169462673 -27732759 - ID_B1 SINE B4 -7 217 90 9 1877 21 0 0 0 chr1 169463553 169463574 -27731858 + GC_rich Low_complexity Low_complexity 1 21 0 9 1877 2114 104 18 117 chr1 169464402 169464795 -27730637 + ORR1B1 LTR MaLR 41 394 0 9 1877 757 277 149 23 chr1 169465053 169465315 -27730117 - MLT1A0 LTR MaLR -70 295 1 9 1877 792 165 272 0 chr1 169465413 169465571 -27729861 + B3 SINE B2 2 202 -14 9 1877 275 287 34 22 chr1 169465867 169465956 -27729476 + MIRb SINE MIR 179 268 0 9 1877 438 250 195 32 chr1 169466004 169466194 -27729238 + MIR SINE MIR 36 256 -6 1 1877 845 181 0 28 chr1 169466245 169466387 -27729045 - B1_Mur2 SINE Alu -8 141 4 1 1877 285 51 0 0 chr1 169466957 169466996 -27728436 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1877 270 218 55 0 chr1 169467005 169467026 -27728406 - B1_Mus2 SINE Alu -88 59 36 1 1877 189 107 0 0 chr1 169467026 169467054 -27728378 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1877 229 279 16 16 chr1 169467054 169467086 -27728346 - ID_B1 SINE B4 -108 116 85 1 1877 978 116 13 33 chr1 169467345 169467497 -27727935 - B1_Mur3 SINE Alu 0 149 1 1 1877 447 19 0 0 chr1 169467836 169467888 -27727544 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1877 356 272 31 52 chr1 169469507 169469604 -27725828 + PB1 SINE Alu 22 116 -11 1 1877 263 211 67 52 chr1 169469620 169469755 -27725677 - Lx9 LINE L1 0 7644 7508 1 1877 1638 212 8 129 chr1 169469756 169470259 -27725173 - Lx9 LINE L1 -250 7394 6953 1 1877 225 323 110 24 chr1 169470432 169470559 -27724873 + L2b LINE L2 3026 3163 -212 1 1877 1048 173 55 23 chr1 169471273 169471492 -27723940 - URR1A DNA MER1_type 0 226 1 1 1877 324 0 0 0 chr1 169471998 169472034 -27723398 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1877 22 35 0 0 chr1 169472203 169472232 -27723200 + AT_rich Low_complexity Low_complexity 1 29 0 1 1877 30 27 0 0 chr1 169472347 169472384 -27723048 + AT_rich Low_complexity Low_complexity 1 37 0 1 1877 2897 80 46 3 chr1 169472404 169472795 -27722637 - L1_Mus3 LINE L1 -8 6630 6223 1 1877 717 221 57 0 chr1 169473208 169473348 -27722084 - B1_Mur1 SINE Alu -1 148 1 1 1877 915 277 18 4 chr1 169473348 169473573 -27721859 - B4A SINE B4 -62 230 3 1 1877 208 349 23 0 chr1 169474029 169474115 -27721317 - MIR SINE MIR -63 145 58 1 1877 603 232 0 0 chr1 169474164 169474276 -27721156 - B4 SINE B4 -179 113 2 1 1877 275 296 53 53 chr1 169474938 169475052 -27720380 - MER5B DNA MER1_type -2 176 63 1 1877 262 291 14 106 chr1 169475182 169475324 -27720108 + LTR81B LTR ERV1? 4 132 -1261 1 1877 225 341 77 0 chr1 169475326 169475417 -27720015 + MER5B DNA MER1_type 3 100 -78 1 1877 227 347 122 16 chr1 169475757 169476012 -27719420 - LTR33 LTR ERVL -6 509 228 1 1878 523 273 40 12 chr1 169476180 169476380 -27719052 - Lx7 LINE L1 -523 7173 6973 1 1878 284 248 9 0 chr1 169476539 169476767 -27718665 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 1878 204 154 26 0 chr1 169478254 169478293 -27717139 + A-rich Low_complexity Low_complexity 2 41 0 1 1878 214 303 122 83 chr1 169478304 169478348 -27717084 + B3A SINE B2 1 51 -147 1 1878 1562 193 74 58 chr1 169478348 169478782 -27716650 - RMER10A LTR ERVL -1 441 1 1 1878 214 303 122 83 chr1 169478782 169478917 -27716515 + B3A SINE B2 52 187 -11 1 1878 302 49 66 0 chr1 169478965 169479026 -27716406 + (CAA)n Simple_repeat Simple_repeat 2 66 0 1 1878 221 304 20 61 chr1 169479259 169479357 -27716075 + MIR3 SINE MIR 89 182 -26 1 1878 912 239 18 44 chr1 169480207 169480435 -27714997 - ID_B1 SINE B4 0 224 3 1 1878 560 270 60 20 chr1 169480654 169480805 -27714627 - MLT1B LTR MaLR -7 383 227 1 1878 673 242 92 5 chr1 169480912 169481107 -27714325 - B3 SINE B2 -4 212 1 1 1878 784 214 10 101 chr1 169481135 169481333 -27714099 - ORR1D1 LTR MaLR -2 372 193 1 1878 330 199 24 74 chr1 169481338 169481427 -27714005 - ORR1D1 LTR MaLR -273 86 3 1 1878 990 244 74 49 chr1 169482926 169483210 -27712222 - B4 SINE B4 -1 291 1 1 1878 210 352 93 31 chr1 169483388 169483517 -27711915 - MIRm SINE MIR -28 248 112 1 1878 578 292 36 46 chr1 169483652 169483846 -27711586 - MER3 DNA MER1_type -12 197 6 1 1878 229 345 25 16 chr1 169484177 169484298 -27711134 - MIRb SINE MIR -45 223 102 1 1878 278 206 72 14 chr1 169484571 169484640 -27710792 + MER5A DNA MER1_type 1 73 -116 1 1878 324 0 0 0 chr1 169484665 169484701 -27710731 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1878 472 307 48 88 chr1 169484714 169484964 -27710468 + Lx8 LINE L1 6623 6862 -611 1 1878 207 114 0 0 chr1 169485253 169485288 -27710144 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 1 1878 348 320 10 20 chr1 169485297 169485396 -27710036 - B1F2 SINE Alu -48 101 4 1 1878 1253 239 30 22 chr1 169485437 169485764 -27709668 - MTE2b LTR MaLR 0 379 26 1 1878 2474 193 75 62 chr1 169485791 169486680 -27708752 + Lx2B LINE L1 5730 6653 -1 1 1878 323 264 0 0 chr1 169486840 169486965 -27708467 + ORR1B1-int LTR MaLR 630 754 -755 1 1878 1160 36 0 0 chr1 169486865 169487005 -27708427 + B1_Mm SINE Alu 8 147 0 1 1878 414 57 0 0 chr1 169487104 169487157 -27708275 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1878 238 119 53 44 chr1 169487157 169487265 -27708167 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 1878 4338 26 2 0 chr1 169487268 169487760 -27707672 + MT2_Mm LTR ERVL 1 493 0 1 1878 8332 62 22 5 chr1 169487762 169488841 -27706591 + MTA_Mm-int LTR MaLR 1 1098 0 1 1878 3491 38 0 0 chr1 169488841 169489237 -27706195 + MTA_Mm LTR MaLR 1 396 0 1 1878 210 87 43 21 chr1 169489248 169489295 -27706137 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1878 670 252 112 66 chr1 169489541 169489800 -27705632 + B4 SINE B4 2 272 -20 1 1878 874 284 78 41 chr1 169490269 169490804 -27704628 + L2a LINE L2 2818 3377 -49 1 1878 392 246 87 8 chr1 169491185 169491312 -27704120 + B1_Mus1 SINE Alu 10 146 -2 1 1878 939 250 15 35 chr1 169491313 169491512 -27703920 + B3 SINE B2 1 195 -21 1 1878 364 169 281 0 chr1 169491548 169491637 -27703795 + B3A SINE B2 3 116 -82 1 1878 522 211 11 0 chr1 169491721 169491811 -27703621 + ID_B1 SINE B4 119 209 -15 1 1878 321 275 25 99 chr1 169491811 169491842 -27703590 + B1_Mur4 SINE Alu 39 150 0 1 1878 312 306 74 37 chr1 169492064 169492227 -27703205 + MIRc SINE MIR 100 268 0 1 1878 244 224 112 53 chr1 169492313 169492483 -27702949 + RLTR40 LTR ERVK 498 677 -140 1 1878 183 183 42 21 chr1 169492484 169492579 -27702853 + (CAGA)n Simple_repeat Simple_repeat 2 98 0 1 1878 1038 95 0 0 chr1 169492592 169492740 -27702692 + (GA)n Simple_repeat Simple_repeat 2 149 0 1 1878 212 277 68 57 chr1 169492990 169493078 -27702354 - MIRb SINE MIR -66 202 114 1 1878 294 282 9 0 chr1 169493180 169493261 -27702171 - B1_Mus1 SINE Alu -11 109 26 1 1878 846 207 85 43 chr1 169493298 169493580 -27701852 + Lx7 LINE L1 7222 7515 -181 1 1878 249 108 0 0 chr1 169493583 169493620 -27701812 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 1 1878 407 347 127 50 chr1 169494783 169495162 -27700270 - MLT1A1 LTR MaLR 0 408 1 1 1878 334 307 9 82 chr1 169495691 169495801 -27699631 - ID_B1 SINE B4 -121 103 2 1 1878 414 0 0 0 chr1 169496446 169496492 -27698940 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1878 1760 157 113 12 chr1 169497323 169497665 -27697767 + Lx4A LINE L1 6683 7056 -2 1 1878 206 167 41 20 chr1 169497665 169497714 -27697718 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 1 1878 650 346 3 80 chr1 169497862 169498163 -27697269 + B4 SINE B4 11 288 -4 1 1878 249 228 0 0 chr1 169498165 169498244 -27697188 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1878 441 0 0 0 chr1 169498372 169498421 -27697011 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1878 1007 182 92 14 chr1 169498426 169498510 -27696922 - RLTR20A LTR ERVK 0 541 443 1 1878 432 0 0 0 chr1 169498510 169498558 -27696874 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1878 1007 204 93 17 chr1 169498558 169498716 -27696716 - RLTR20A LTR ERVK -93 484 309 1 1878 3661 131 70 8 chr1 169498719 169499379 -27696053 - MYSERV16_I-int LTR ERVK -568 1758 1058 1 1878 3119 152 56 43 chr1 169499375 169500000 -27695432 - MYSERV16_I-int LTR ERVK -1392 934 302 1 1878 1714 164 17 17 chr1 169500000 169500297 -27695135 - MYSERV16_I-int LTR ERVK -2025 301 5 1 1878 1353 96 22 11 chr1 169500406 169500668 -27694764 - ORR1A3 LTR MaLR -8 318 3 2 1878 2108 172 92 11 chr1 169501574 169501665 -27693767 - RLTR20A LTR ERVK 0 541 441 3 1878 450 0 0 0 chr1 169501665 169501715 -27693717 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1878 2108 178 106 17 chr1 169501715 169502138 -27693294 - RLTR20A LTR ERVK -98 480 2 3 1878 570 83 27 18 chr1 169503495 169503606 -27691826 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 5 1878 495 0 0 0 chr1 169503628 169503683 -27691749 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1878 565 218 29 189 chr1 169503705 169503948 -27691484 - B4A SINE B4 -84 208 5 7 1878 357 194 39 10 chr1 169503964 169504068 -27691364 + CT-rich Low_complexity Low_complexity 5 111 0 8 1878 22 70 0 0 chr1 169504749 169504792 -27690640 + AT_rich Low_complexity Low_complexity 1 43 0 9 1878 3812 206 70 63 chr1 169505029 169505958 -27689474 + RCHARR1 DNA MER1_type 3 937 -37 1 1878 227 241 17 33 chr1 169506174 169506234 -27689198 + ID SINE ID 7 65 -159 1 1878 919 213 39 24 chr1 169506219 169506426 -27689006 + ID_B1 SINE B4 15 224 0 1 1878 285 339 42 0 chr1 169507215 169507333 -27688099 + MT2A LTR ERVL 1 123 -410 1 1878 1330 287 8 58 chr1 169507228 169507609 -27687823 + MTE2b LTR MaLR 18 379 0 1 1878 399 288 17 45 chr1 169508305 169508419 -27687013 - B1F1 SINE Alu -3 124 1 1 1878 959 215 3 3 chr1 169508429 169508701 -27686731 + CT-rich Low_complexity Low_complexity 1 272 0 1 1878 276 53 0 0 chr1 169508702 169508740 -27686692 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 1 1878 21 36 0 0 chr1 169508758 169508786 -27686646 + AT_rich Low_complexity Low_complexity 1 28 0 1 1878 758 299 5 15 chr1 169508904 169509101 -27686331 + B3A SINE B2 4 198 0 1 1878 324 0 0 0 chr1 169509166 169509202 -27686230 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1878 560 230 235 28 chr1 169509357 169509536 -27685896 - B3 SINE B2 0 216 1 2 1878 220 189 0 0 chr1 169509986 169510023 -27685409 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1878 243 330 68 58 chr1 169510188 169510378 -27685054 - L2 LINE L2 -785 2634 2443 2 1878 256 266 25 12 chr1 169510611 169510691 -27684741 - L1M3 LINE L1 -530 5638 5558 2 1878 1135 30 0 8 chr1 169511063 169511197 -27684235 + L1_Mus2 LINE L1 6258 6390 -176 2 1878 851 246 177 37 chr1 169511218 169511569 -27683863 + RLTR9E LTR ERVK 10 409 0 2 1878 1429 55 0 32 chr1 169511569 169511757 -27683675 + L1_Mus1 LINE L1 6386 6567 0 2 1878 278 256 148 10 chr1 169512034 169512213 -27683219 - L1MA4 LINE L1 -331 5981 5782 2 1878 411 167 18 18 chr1 169512213 169512323 -27683109 + (TATATG)n Simple_repeat Simple_repeat 3 112 0 2 1878 801 260 31 20 chr1 169512325 169512580 -27682852 - L1MA4 LINE L1 -507 5793 5536 2 1878 1110 229 211 12 chr1 169513417 169513749 -27681683 + MTD LTR MaLR 8 405 -14 3 1878 228 304 32 65 chr1 169514585 169514708 -27680724 - MIRc SINE MIR -98 170 52 3 1878 414 264 71 16 chr1 169514716 169514843 -27680589 + B1F SINE Alu 3 136 -13 3 1878 241 225 0 0 chr1 169514888 169514928 -27680504 + ID4_ SINE ID 3 42 -41 3 1878 238 327 74 9 chr1 169515409 169515517 -27679915 - L2c LINE L2 0 3387 3273 3 1878 225 226 63 16 chr1 169517355 169517418 -27678014 + ORR1E LTR MaLR 19 84 -275 3 1878 230 231 19 0 chr1 169517418 169517470 -27677962 + G-rich Low_complexity Low_complexity 3 55 0 3 1878 303 351 86 43 chr1 169517516 169517748 -27677684 + ORR1E LTR MaLR 64 305 -54 3 1878 187 287 146 18 chr1 169517917 169518027 -27677405 - MER5A DNA MER1_type -19 170 47 3 1878 242 299 0 0 chr1 169518135 169518202 -27677230 - ID4_ SINE ID -15 68 2 3 1878 401 301 176 43 chr1 169518454 169518687 -27676745 - B4 SINE B4 -18 274 11 3 1878 836 309 38 0 chr1 169519739 169520001 -27675431 + B4A SINE B4 3 274 -18 4 1878 225 0 0 0 chr1 169520004 169520029 -27675403 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1878 303 96 0 0 chr1 169520159 169520211 -27675221 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1878 371 272 87 19 chr1 169520725 169520886 -27674546 + MER5B DNA MER1_type 2 173 -5 4 1878 238 26 51 0 chr1 169521014 169521053 -27674379 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1878 879 291 3 21 chr1 169521216 169521504 -27673928 + B4A SINE B4 4 286 -6 4 1878 193 330 44 35 chr1 169521654 169521767 -27673665 - L2a LINE L2 -7 3419 3306 4 1878 323 347 49 81 chr1 169522242 169522587 -27672845 + L2c LINE L2 3049 3382 -5 4 1878 1232 288 21 16 chr1 169522650 169523027 -27672405 + MTE2b LTR MaLR 1 379 0 4 1878 1055 207 9 36 chr1 169523119 169523340 -27672092 - B3 SINE B2 -1 215 1 4 1878 181 163 20 20 chr1 169523396 169523446 -27671986 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1878 241 89 44 0 chr1 169523482 169523527 -27671905 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1878 928 94 0 74 chr1 169524413 169524562 -27670870 - B2_Mm2 SINE B2 -55 140 3 5 1878 1123 215 0 5 chr1 169525282 169525492 -27669940 + B3 SINE B2 1 209 -7 5 1878 199 247 91 52 chr1 169525995 169526072 -27669360 - MIRb SINE MIR -143 125 46 5 1878 313 342 38 31 chr1 169526101 169526261 -27669171 + L3 LINE CR1 3518 3678 -811 5 1878 1375 91 16 0 chr1 169526647 169526834 -27668598 - B2_Mm2 SINE B2 -5 190 1 5 1878 198 167 0 0 chr1 169527139 169527175 -27668257 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1878 665 256 93 82 chr1 169527223 169527491 -27667941 - B4A SINE B4 -21 271 1 5 1878 222 37 0 0 chr1 169527688 169527715 -27667717 + (GGATG)n Simple_repeat Simple_repeat 3 29 0 5 1878 285 210 0 0 chr1 169528496 169528558 -27666874 + (CGG)n Simple_repeat Simple_repeat 3 64 0 6 1878 441 0 0 0 chr1 169528786 169528835 -27666597 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1878 324 0 0 0 chr1 169530683 169530719 -27664713 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1878 351 0 0 0 chr1 169530719 169530757 -27664675 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1878 291 336 40 32 chr1 169530846 169530972 -27664460 + MIRb SINE MIR 73 199 -69 6 1878 448 365 36 36 chr1 169532815 169533065 -27662367 - MIR SINE MIR -12 250 1 6 1878 639 0 0 0 chr1 169533198 169533269 -27662163 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 6 1878 378 91 0 0 chr1 169533356 169533411 -27662021 + (CTTAT)n Simple_repeat Simple_repeat 4 58 0 6 1878 247 333 11 11 chr1 169533443 169533537 -27661895 - MER58B DNA MER1_type -28 313 220 6 1878 1316 13 0 6 chr1 169533747 169533905 -27661527 - L1Md_A LINE L1 0 6582 6426 6 1878 303 28 0 0 chr1 169534113 169534149 -27661283 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1878 186 133 0 0 chr1 169534920 169534950 -27660482 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 7 1878 235 218 322 0 chr1 169535912 169535999 -27659433 + MIR SINE MIR 36 150 -58 7 1878 246 32 0 0 chr1 169536036 169536067 -27659365 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1878 1228 27 0 14 chr1 169536179 169536327 -27659105 + B1_Mus1 SINE Alu 1 146 -2 7 1878 286 230 92 80 chr1 169536402 169536577 -27658855 + RSINE1 SINE B4 87 278 -14 7 1878 714 264 123 79 chr1 169536695 169537012 -27658420 + MamRep434 DNA TcMar 95 425 -1 7 1878 207 143 102 0 chr1 169537170 169537219 -27658213 + C-rich Low_complexity Low_complexity 1 54 0 7 1878 183 42 0 0 chr1 169537644 169537668 -27657764 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 7 1878 253 336 29 37 chr1 169538156 169538292 -27657140 + MIR SINE MIR 128 262 0 7 1878 405 135 22 11 chr1 169538902 169538992 -27656440 + CT-rich Low_complexity Low_complexity 2 92 0 8 1878 287 188 39 19 chr1 169539096 169539199 -27656233 + (TA)n Simple_repeat Simple_repeat 2 106 0 8 1878 975 122 0 20 chr1 169539586 169539737 -27655695 + B1_Mur4 SINE Alu 2 149 -1 8 1878 780 320 108 57 chr1 169540745 169541133 -27654299 - MLT1A1 LTR MaLR 0 408 1 8 1878 25 31 0 0 chr1 169541322 169541354 -27654078 + AT_rich Low_complexity Low_complexity 1 32 0 8 1878 423 38 0 0 chr1 169541373 169541426 -27654006 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1878 399 314 48 48 chr1 169541441 169541588 -27653844 - RSINE1 SINE B4 -18 147 1 8 1878 222 222 0 0 chr1 169541716 169541770 -27653662 + CT-rich Low_complexity Low_complexity 5 58 0 8 1878 468 234 31 119 chr1 169541818 169542012 -27653420 - MTEb LTR MaLR -13 366 190 8 1878 396 0 0 0 chr1 169542021 169542065 -27653367 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1878 22 35 0 0 chr1 169542084 169542113 -27653319 + AT_rich Low_complexity Low_complexity 1 29 0 9 1878 696 201 141 25 chr1 169542121 169542284 -27653148 - MTEb LTR MaLR -197 182 1 8 1878 225 0 0 0 chr1 169542453 169542478 -27652954 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 9 1878 225 0 0 0 chr1 169542502 169542527 -27652905 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1878 460 319 7 34 chr1 169542542 169542691 -27652741 - RSINE1 SINE B4 -18 147 3 9 1878 995 152 218 21 chr1 169544427 169544615 -27650817 + URR1B DNA MER1_type 1 225 0 9 1878 2268 20 0 0 chr1 169544616 169544868 -27650564 + MERVL-int LTR ERVL 2166 2417 -3068 9 1878 433 305 76 28 chr1 169544868 169545013 -27650419 + B4A SINE B4 2 153 -139 9 1878 635 282 23 51 chr1 169545454 169545671 -27649761 + B3 SINE B2 3 213 -3 9 1878 1038 218 130 87 chr1 169545842 169546188 -27649244 - MTE2a LTR MaLR 0 379 19 9 1878 324 326 43 68 chr1 169546370 169546577 -27648855 + MLT2D LTR ERVL 38 239 -175 9 1878 219 69 0 0 chr1 169546583 169546612 -27648820 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1878 571 285 40 49 chr1 169546615 169546840 -27648592 - B4A SINE B4 -14 278 56 1 1878 300 278 153 40 chr1 169546890 169547040 -27648392 + MLT2D LTR ERVL 329 495 -72 9 1878 483 263 0 208 chr1 169547394 169547562 -27647870 + B1F SINE Alu 8 140 -9 1 1878 183 80 0 0 chr1 169547562 169547587 -27647845 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1878 730 287 92 26 chr1 169547587 169547859 -27647573 + B4A SINE B4 1 290 -2 1 1878 284 316 21 29 chr1 169548785 169548925 -27646507 + MIRc SINE MIR 85 223 -45 1 1878 461 174 7 22 chr1 169549090 169549225 -27646207 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1878 210 245 0 39 chr1 169549389 169549440 -27645992 + (TATG)n Simple_repeat Simple_repeat 3 51 0 1 1878 293 47 23 0 chr1 169549574 169549617 -27645815 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1878 336 298 58 0 chr1 169549825 169549929 -27645503 + PB1D7 SINE Alu 1 110 -10 1 1878 342 0 0 0 chr1 169550018 169550056 -27645376 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1878 965 87 65 0 chr1 169550141 169550279 -27645153 + B1_Mus1 SINE Alu 2 148 0 1 1878 187 54 26 26 chr1 169550281 169550319 -27645113 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 1878 230 340 73 64 chr1 169550860 169551080 -27644352 + MLT-int LTR MaLR 681 902 -833 1 1878 291 307 49 67 chr1 169551281 169551445 -27643987 + L2b LINE L2 3055 3215 -160 1 1878 718 251 141 27 chr1 169551572 169551834 -27643598 + B4A SINE B4 1 292 0 1 1878 1256 166 36 14 chr1 169552124 169552344 -27643088 + URR1A DNA MER1_type 1 225 -1 1 1878 304 185 138 0 chr1 169553080 169553145 -27642287 - HAL1-3A_ME LINE L1 -809 2049 1976 1 1878 309 51 0 0 chr1 169553277 169553316 -27642116 + (TCC)n Simple_repeat Simple_repeat 2 40 0 1 1878 763 273 32 32 chr1 169553317 169553533 -27641899 - B4 SINE B4 -75 217 2 1 1878 3247 63 8 0 chr1 169554013 169554410 -27641022 + MTB LTR MaLR 1 400 0 1 1878 315 0 0 0 chr1 169554583 169554618 -27640814 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1878 371 268 133 8 chr1 169555562 169555690 -27639742 - L1ME4a LINE L1 -10 6114 5971 1 1878 388 288 26 18 chr1 169555886 169555999 -27639433 + PB1D10 SINE Alu 4 117 0 1 1878 322 273 169 64 chr1 169558829 169559048 -27636384 + MIR SINE MIR 18 259 -3 1 1878 378 0 0 0 chr1 169559613 169559655 -27635777 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1878 21 0 0 0 chr1 169559655 169559676 -27635756 + GC_rich Low_complexity Low_complexity 1 21 0 1 1878 678 174 0 0 chr1 169561584 169561693 -27633739 - B1_Mur2 SINE Alu -39 110 2 1 1878 459 0 0 0 chr1 169561940 169561991 -27633441 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1878 194 327 61 49 chr1 169562422 169562586 -27632846 + MIRc SINE MIR 14 179 -89 1 1878 497 224 0 53 chr1 169562955 169563068 -27632364 - PB1D7 SINE Alu 0 120 14 1 1878 381 142 330 0 chr1 169563423 169563535 -27631897 - B2_Mm2 SINE B2 0 195 47 1 1878 1310 80 17 0 chr1 169563635 169563811 -27631621 - B2_Mm1t SINE B2 -14 179 1 1 1878 27 73 0 0 chr1 169563834 169563889 -27631543 + AT_rich Low_complexity Low_complexity 1 55 0 1 1878 199 328 0 0 chr1 169564895 169564953 -27630479 - L2 LINE L2 -802 2617 2560 1 1878 369 288 142 14 chr1 169565251 169565399 -27630033 - L2 LINE L2 -1199 2220 2054 1 1878 501 294 64 104 chr1 169566140 169566485 -27628947 + MER44A DNA MER2_type 2 332 -7 1 1878 315 289 70 49 chr1 169567063 169567205 -27628227 - MLT1J2 LTR MaLR -49 399 255 1 1878 497 297 40 116 chr1 169567453 169567651 -27627781 - B4 SINE B4 -1 291 109 1 1878 369 0 0 0 chr1 169567943 169567984 -27627448 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1878 221 246 35 0 chr1 169567989 169568073 -27627359 + (TATG)n Simple_repeat Simple_repeat 1 86 0 1 1878 1511 219 34 57 chr1 169568109 169568463 -27626969 - ORR1E LTR MaLR -9 350 5 1 1878 200 229 0 32 chr1 169568528 169568591 -27626841 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1878 1791 160 146 26 chr1 169571178 169571562 -27623870 - RLTR23 LTR ERV1 0 430 1 1 1878 1018 242 139 11 chr1 169571564 169571891 -27623541 + MTE2a LTR MaLR 37 405 -14 1 1878 587 321 23 55 chr1 169572162 169572419 -27623013 + RLTR18 LTR ERVK 25 273 -343 1 1878 313 191 19 28 chr1 169572521 169572629 -27622803 + CT-rich Low_complexity Low_complexity 3 109 0 1 1878 661 172 133 0 chr1 169572635 169572763 -27622669 - B1_Mus2 SINE Alu 0 147 3 1 1878 194 176 59 0 chr1 169573080 169573114 -27622318 + L2c LINE L2 3285 3320 -67 1 1878 366 300 19 62 chr1 169573382 169573542 -27621890 + B4A SINE B4 1 153 -139 1 1878 254 183 217 0 chr1 169574036 169574096 -27621336 + B4A SINE B4 142 214 -78 1 1878 519 17 0 0 chr1 169574096 169574156 -27621276 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1878 266 309 12 24 chr1 169574460 169574543 -27620889 + MARNA DNA Mariner 164 245 -341 1 1878 251 329 0 0 chr1 169574634 169574719 -27620713 + MARNA DNA Mariner 261 345 -241 1 1878 264 122 0 0 chr1 169574950 169574991 -27620441 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1878 200 398 11 0 chr1 169575857 169575945 -27619487 + MIR3 SINE MIR 89 177 -31 1 1878 559 272 14 42 chr1 169576159 169576301 -27619131 + B4 SINE B4 2 139 -153 1 1878 210 143 0 0 chr1 169576317 169576352 -27619080 + (AGGGGG)n Simple_repeat Simple_repeat 6 40 0 1 1878 403 0 16 0 chr1 169576377 169576439 -27618993 + B2_Mm1t SINE B2 131 193 0 1 1878 1003 157 97 97 chr1 169576558 169576784 -27618648 + URR1A DNA MER1_type 1 226 0 1 1878 250 203 258 30 chr1 169577137 169577203 -27618229 - B4 SINE B4 -63 229 149 1 1878 319 330 43 17 chr1 169577206 169577323 -27618109 + MLT1A0 LTR MaLR 165 284 -81 1 1878 1277 183 95 95 chr1 169577331 169577711 -27617721 - ORR1C2 LTR MaLR -2 382 3 1 1878 687 184 101 66 chr1 169577756 169577954 -27617478 + Lx7 LINE L1 6903 7107 -589 1 1878 206 369 22 137 chr1 169578234 169578460 -27616972 - MIRb SINE MIR -53 215 16 1 1878 1479 43 26 26 chr1 169579971 169580164 -27615268 - B2_Mm2 SINE B2 -2 193 1 1 1878 909 192 98 0 chr1 169580776 169580969 -27614463 - B3 SINE B2 -4 212 1 1 1878 1008 261 103 83 chr1 169580999 169581396 -27614036 - MTD LTR MaLR -14 405 1 1 1878 468 0 0 0 chr1 169581447 169581499 -27613933 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1878 25 75 0 0 chr1 169582228 169582281 -27613151 + AT_rich Low_complexity Low_complexity 1 53 0 1 1878 1262 251 62 56 chr1 169582560 169582815 -27612617 - ORR1E LTR MaLR -2 357 96 1 1878 2394 132 38 168 chr1 169582815 169583345 -27612087 - RMER4A LTR ERVK -4 462 2 1 1878 1262 251 62 56 chr1 169583345 169583444 -27611988 - ORR1E LTR MaLR -264 95 1 1 1878 288 245 58 19 chr1 169584494 169584598 -27610834 + MER5B DNA MER1_type 55 162 -16 1 1878 333 97 30 30 chr1 169585170 169585236 -27610196 - MLT1I LTR MaLR -6 442 352 1 1878 958 104 139 6 chr1 169585428 169585593 -27609839 - B2_Mm2 SINE B2 -8 187 1 1 1878 640 259 14 0 chr1 169586332 169586475 -27608957 + RSINE1 SINE B4 5 149 -16 1 1878 300 111 0 0 chr1 169586481 169586526 -27608906 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1878 351 0 0 0 chr1 169586891 169586930 -27608502 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1878 494 70 14 0 chr1 169587150 169587221 -27608211 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 1878 288 56 0 0 chr1 169587428 169587464 -27607968 + U2 snRNA snRNA 1 36 -152 1 1878 203 85 41 41 chr1 169588019 169588068 -27607364 + (TGG)n Simple_repeat Simple_repeat 3 51 0 1 1878 746 289 77 15 chr1 169588239 169588499 -27606933 + B4A SINE B4 1 276 -16 1 1878 636 191 6 11 chr1 169588549 169588729 -27606703 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1878 682 208 10 3 chr1 169588749 169589059 -27606373 + (CA)n Simple_repeat Simple_repeat 1 312 0 1 1878 391 224 0 45 chr1 169589078 169589232 -27606200 + (CA)n Simple_repeat Simple_repeat 2 148 0 1 1878 1347 66 0 0 chr1 169589594 169589761 -27605671 - B2_Mm2 SINE B2 -28 167 1 1 1878 389 277 92 0 chr1 169590379 169590498 -27604934 + L2a LINE L2 3295 3424 -2 1 1878 191 326 93 36 chr1 169591624 169591764 -27603668 + MIRc SINE MIR 121 268 0 1 1878 207 139 0 0 chr1 169592393 169592429 -27603003 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1878 35 0 0 0 chr1 169592444 169592479 -27602953 + AT_rich Low_complexity Low_complexity 1 35 0 1 1878 25 0 0 0 chr1 169592720 169592745 -27602687 + AT_rich Low_complexity Low_complexity 1 25 0 1 1878 360 0 0 0 chr1 169593961 169594001 -27601431 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1878 929 277 98 70 chr1 169595227 169595596 -27599836 - MTE2b LTR MaLR 0 379 1 1 1878 1804 139 105 47 chr1 169595647 169595820 -27599612 + ORR1C2 LTR MaLR 2 167 -217 1 1878 189 0 0 0 chr1 169595820 169595841 -27599591 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 1 1878 1804 139 105 47 chr1 169595841 169596029 -27599403 + ORR1C2 LTR MaLR 168 383 -1 1 1878 215 240 0 20 chr1 169596891 169596942 -27598490 + GA-rich Low_complexity Low_complexity 1 50 0 1 1878 315 0 0 0 chr1 169597260 169597295 -27598137 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1878 207 0 0 0 chr1 169597295 169597317 -27598115 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1878 679 286 0 13 chr1 169597317 169597462 -27597970 - RSINE1 SINE B4 -19 146 3 1 1878 596 102 0 64 chr1 169597896 169598053 -27597379 + GA-rich Low_complexity Low_complexity 2 148 0 1 1878 288 0 0 0 chr1 169600377 169600409 -27595023 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 1878 931 237 74 9 chr1 169600433 169600663 -27594769 + B4A SINE B4 36 280 -12 1 1878 383 359 102 20 chr1 169601072 169601268 -27594164 - Cheshire DNA MER1_type -2195 225 14 1 1878 188 111 28 0 chr1 169603157 169603193 -27592239 + (CGGG)n Simple_repeat Simple_repeat 2 38 0 1 1878 586 309 0 0 chr1 169603858 169603997 -27591435 - ID_B1 SINE B4 -9 215 77 2 1878 226 317 15 73 chr1 169603886 169604022 -27591410 - MT2B2 LTR ERVL -321 263 136 2 1878 29 0 0 0 chr1 169604046 169604075 -27591357 + AT_rich Low_complexity Low_complexity 1 29 0 2 1878 311 234 0 30 chr1 169604271 169604337 -27591095 + L4 LINE RTE 1782 1845 -184 2 1878 308 73 36 0 chr1 169605383 169605438 -27589994 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 2 1878 210 128 0 0 chr1 169605493 169605532 -27589900 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1878 1203 246 51 4 chr1 169605537 169605790 -27589642 - B4 SINE B4 -19 273 9 2 1878 247 308 131 16 chr1 169606489 169606611 -27588821 - MIRb SINE MIR -114 154 19 2 1878 810 294 85 12 chr1 169606709 169606967 -27588465 + ORR1D2 LTR MaLR 85 361 -9 2 234 2114 191 30 84 chr1 169606973 169607516 -27587916 - RMER19C LTR ERVK -2 609 1 2 1879 224 358 144 6 chr1 169607673 169607847 -27587585 - MIRb SINE MIR -37 231 34 2 1879 247 200 16 48 chr1 169608509 169608572 -27586860 + CT-rich Low_complexity Low_complexity 4 64 0 2 1879 683 258 89 94 chr1 169608659 169608746 -27586686 - B4 SINE B4 0 292 221 2 1879 2718 117 28 46 chr1 169608746 169609204 -27586228 - Lx LINE L1 0 6654 6205 2 1879 683 258 89 94 chr1 169609204 169609351 -27586081 - B4 SINE B4 -72 220 59 2 1879 385 200 12 59 chr1 169609691 169609776 -27585656 + URR1B DNA MER1_type 1 81 -144 2 1879 1336 71 27 21 chr1 169609776 169609962 -27585470 + B2_Mm2 SINE B2 2 188 -7 2 1879 1253 48 0 0 chr1 169609963 169610110 -27585322 + B1_Mm SINE Alu 1 147 0 2 1879 207 0 0 0 chr1 169610134 169610157 -27585275 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1879 903 149 26 0 chr1 169610158 169610312 -27585120 + URR1B DNA MER1_type 68 225 0 2 1879 238 337 0 11 chr1 169610312 169610402 -27585030 + MLT1A1 LTR MaLR 26 114 -294 2 1879 293 325 73 68 chr1 169610460 169610665 -27584767 + ORR1E LTR MaLR 113 318 -41 2 1879 207 0 0 0 chr1 169610665 169610688 -27584744 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1879 181 321 19 0 chr1 169611216 169611269 -27584163 + L3 LINE CR1 4433 4486 -3 2 1879 330 337 0 21 chr1 169611554 169611648 -27583784 - PB1D10 SINE Alu -9 108 17 2 1879 5907 285 81 42 chr1 169612139 169613136 -27582296 + L1_Mur3 LINE L1 2196 3204 -2676 2 1879 1032 263 0 0 chr1 169613136 169613345 -27582087 + B3 SINE B2 2 210 -6 2 1879 5907 285 81 42 chr1 169613345 169615291 -27580141 + L1_Mur3 LINE L1 3205 5253 -627 2 1879 526 214 95 0 chr1 169615401 169615527 -27579905 + B3A SINE B2 5 142 -56 2 1879 1184 71 18 6 chr1 169615542 169615712 -27579720 + (CA)n Simple_repeat Simple_repeat 2 173 0 2 1879 302 302 39 42 chr1 169615738 169615941 -27579491 + L1_Mur1 LINE L1 5302 5535 -649 2 1879 1993 244 30 83 chr1 169615947 169616547 -27578885 + Lx8 LINE L1 6575 7142 -331 2 1879 306 357 0 0 chr1 169617385 169617497 -27577935 + MIRc SINE MIR 149 260 -8 2 1879 270 0 0 0 chr1 169617594 169617624 -27577808 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1879 189 0 0 0 chr1 169620697 169620718 -27574714 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1879 444 82 0 0 chr1 169623200 169623261 -27572171 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1879 242 73 24 0 chr1 169623609 169623650 -27571782 + (CAAAAA)n Simple_repeat Simple_repeat 5 46 0 2 1879 32 0 0 0 chr1 169624378 169624410 -27571022 + AT_rich Low_complexity Low_complexity 1 32 0 2 1879 638 167 0 16 chr1 169624648 169624776 -27570656 + CT-rich Low_complexity Low_complexity 2 127 0 2 1879 24 0 0 0 chr1 169625848 169625872 -27569560 + GC_rich Low_complexity Low_complexity 1 24 0 2 1879 234 91 0 0 chr1 169626727 169626760 -27568672 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1879 811 299 49 28 chr1 169629486 169629772 -27565660 - B4A SINE B4 0 292 1 2 1879 198 0 0 0 chr1 169630302 169630324 -27565108 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1879 295 175 32 0 chr1 169631855 169631918 -27563514 - MTD LTR MaLR -162 245 181 2 1879 852 148 6 12 chr1 169631922 169632093 -27563339 + CT-rich Low_complexity Low_complexity 2 171 0 2 1879 869 258 16 0 chr1 169632112 169632298 -27563134 - B3 SINE B2 -27 189 1 2 1879 855 261 19 14 chr1 169632298 169632507 -27562925 - MTD LTR MaLR -209 210 1 2 1879 318 26 0 0 chr1 169633297 169633336 -27562096 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1879 360 0 0 0 chr1 169633336 169633375 -27562057 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1879 355 267 19 29 chr1 169636297 169636401 -27559031 - MLT1A1 LTR MaLR -6 402 300 2 1879 180 219 0 0 chr1 169636650 169636691 -27558741 + (CCA)n Simple_repeat Simple_repeat 1 41 0 2 1879 477 0 0 0 chr1 169638517 169638570 -27556862 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1879 492 18 0 0 chr1 169638570 169638626 -27556806 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1879 354 297 78 21 chr1 169638773 169638914 -27556518 - L2a LINE L2 0 3426 3278 2 1879 516 32 0 0 chr1 169639524 169639586 -27555846 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1879 1225 54 0 0 chr1 169639666 169639813 -27555619 + B1_Mus1 SINE Alu 2 148 0 2 1879 261 0 0 0 chr1 169639813 169639842 -27555590 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1879 502 255 6 18 chr1 169639852 169640019 -27555413 + B3A SINE B2 61 216 0 2 1879 227 220 20 0 chr1 169640683 169640733 -27554699 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 2 1879 589 266 2 31 chr1 169640791 169640969 -27554463 - L1MEf LINE L1 -3874 2272 2097 2 1879 24 0 0 0 chr1 169641013 169641037 -27554395 + AT_rich Low_complexity Low_complexity 1 24 0 2 1879 456 312 44 4 chr1 169641087 169641335 -27554097 - L1MEf LINE L1 -4169 2073 1816 2 1879 362 326 54 73 chr1 169641470 169641672 -27553760 - MER3 DNA MER1_type 0 209 12 2 1879 241 330 0 11 chr1 169641672 169641764 -27553668 + ID2 SINE ID 1 91 -61 2 1879 346 294 6 35 chr1 169641773 169641979 -27553453 - L1MEf LINE L1 -5208 928 734 2 1879 277 292 121 21 chr1 169642130 169642270 -27553162 - L1MEf LINE L1 -5660 476 323 2 1879 213 194 134 0 chr1 169642523 169642590 -27552842 + MIR SINE MIR 76 151 -111 2 1879 23 0 0 0 chr1 169642601 169642624 -27552808 + AT_rich Low_complexity Low_complexity 1 23 0 2 1879 937 137 0 12 chr1 169643403 169643573 -27551859 + (TCC)n Simple_repeat Simple_repeat 2 169 0 2 1879 645 165 0 0 chr1 169644760 169644924 -27550508 + CT-rich Low_complexity Low_complexity 1 164 0 2 1879 224 228 0 34 chr1 169646392 169646451 -27548981 + (TAA)n Simple_repeat Simple_repeat 2 58 0 2 1879 277 246 14 28 chr1 169648939 169649010 -27546422 - ID4 SINE ID -9 74 5 2 1879 592 256 0 30 chr1 169649466 169649599 -27545833 + B1F2 SINE Alu 10 138 -11 2 1879 815 289 88 39 chr1 169649613 169650077 -27545355 - L1MB5 LINE L1 -43 6131 5645 2 1879 246 250 0 42 chr1 169650227 169650298 -27545134 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1879 353 133 0 0 chr1 169650299 169650359 -27545073 + HAL1-3A_ME LINE L1 1973 2032 -826 2 1879 401 257 25 65 chr1 169650462 169650662 -27544770 - L1MB5 LINE L1 -770 5376 5185 2 1879 203 88 0 29 chr1 169650689 169650724 -27544708 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 2 1879 753 114 0 0 chr1 169650816 169650930 -27544502 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1879 358 271 62 67 chr1 169651124 169651302 -27544130 - L1MB7 LINE L1 0 6184 6008 2 1879 928 262 12 119 chr1 169651572 169651892 -27543540 - B4A SINE B4 -2 290 5 2 1879 304 179 9 45 chr1 169651938 169652049 -27543383 + (TATG)n Simple_repeat Simple_repeat 4 110 0 2 1879 374 328 25 25 chr1 169652055 169652177 -27543255 - RSINE1 SINE B4 0 165 44 2 1879 356 55 0 18 chr1 169652565 169652621 -27542811 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 1879 1199 36 0 0 chr1 169652621 169652759 -27542673 - B1_Mus2 SINE Alu -9 138 1 2 1879 723 185 75 0 chr1 169652968 169653114 -27542318 - L1MC LINE L1 -640 5704 5548 2 1879 21 0 0 0 chr1 169653122 169653143 -27542289 + AT_rich Low_complexity Low_complexity 1 21 0 2 1879 263 270 8 94 chr1 169653374 169653501 -27541931 + RMER12 LTR ERVK 741 856 -466 2 1879 891 286 101 97 chr1 169653511 169654375 -27541057 - L1MC1 LINE L1 -102 6231 5365 2 1879 243 170 0 0 chr1 169655028 169655075 -27540357 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 2 1879 780 276 60 21 chr1 169655143 169655424 -27540008 - B4A SINE B4 0 292 1 2 1879 25 51 0 0 chr1 169656031 169656070 -27539362 + AT_rich Low_complexity Low_complexity 1 39 0 2 1879 226 294 0 0 chr1 169656346 169656397 -27539035 - B4A SINE B4 -2 290 240 2 1879 291 254 0 14 chr1 169656407 169656479 -27538953 + CT-rich Low_complexity Low_complexity 2 72 0 2 1879 617 230 73 24 chr1 169656618 169656783 -27538649 - B4A SINE B4 -118 174 2 2 1879 297 337 50 28 chr1 169656921 169657101 -27538331 - MLT1L LTR MaLR -5 605 422 2 1879 476 284 140 11 chr1 169658234 169658412 -27537020 + B4A SINE B4 74 274 -18 2 1879 1146 273 3 28 chr1 169658521 169658597 -27536835 + B4 SINE B4 5 76 -216 2 1879 270 0 0 0 chr1 169658597 169658627 -27536805 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1879 1146 273 3 28 chr1 169658627 169658840 -27536592 + B4 SINE B4 77 287 -5 2 1879 419 333 81 28 chr1 169662053 169662300 -27533132 + LTR33 LTR ERVL 172 431 -84 2 1879 289 155 16 18 chr1 169662792 169662866 -27532566 - MTD LTR MaLR -14 407 335 2 1879 360 0 0 0 chr1 169663011 169663051 -27532381 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1879 473 318 124 62 chr1 169663134 169663520 -27531912 - MLT1G1 LTR MaLR -2 577 168 2 1879 386 155 12 23 chr1 169663682 169663775 -27531657 + MTC LTR MaLR 256 407 -14 2 1879 180 0 0 0 chr1 169664249 169664269 -27531163 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1879 238 167 36 18 chr1 169665214 169665269 -27530163 + PB1 SINE Alu 70 125 -2 2 1879 330 326 5 28 chr1 169665321 169665462 -27529970 + MIRb SINE MIR 59 200 -68 2 1879 216 67 0 0 chr1 169667382 169667412 -27528020 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1879 345 250 0 48 chr1 169668951 169669035 -27526397 - MIR SINE MIR -95 167 88 2 1879 211 329 25 25 chr1 169670169 169670250 -27525182 - L4 LINE RTE -178 1851 1771 3 1879 289 349 0 0 chr1 169671186 169671269 -27524163 + Charlie12 DNA MER1_type 21 103 -2770 3 1879 432 0 0 0 chr1 169671410 169671458 -27523974 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1879 1234 54 0 0 chr1 169674722 169674869 -27520563 - B1_Mus1 SINE Alu 0 148 2 3 1879 268 169 134 61 chr1 169675355 169675437 -27519995 + MER5B DNA MER1_type 33 120 -58 3 1879 519 17 0 0 chr1 169675936 169675996 -27519436 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 3 1879 351 44 0 0 chr1 169676081 169676126 -27519306 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1879 3626 116 39 15 chr1 169676126 169676668 -27518764 - Lx LINE L1 -28 6626 6072 3 1879 251 314 112 37 chr1 169677311 169677605 -27517827 - L1ME4a LINE L1 -8 6116 5801 3 1879 222 37 0 0 chr1 169677897 169677924 -27517508 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1879 677 369 33 7 chr1 169678383 169678656 -27516776 + MLT1A0 LTR MaLR 86 365 0 3 1879 294 301 10 0 chr1 169679204 169679307 -27516125 + (TATG)n Simple_repeat Simple_repeat 3 106 0 3 1879 776 226 190 8 chr1 169679313 169679550 -27515882 - B4A SINE B4 -12 280 1 3 1879 700 273 170 9 chr1 169679790 169680126 -27515306 - Lx8 LINE L1 -275 7198 6809 3 1879 214 267 50 0 chr1 169680389 169680449 -27514983 - B1_Mus2 SINE Alu -84 63 1 3 1879 294 305 47 47 chr1 169680584 169680732 -27514700 - B1_Mus1 SINE Alu 0 148 1 3 1879 537 279 76 32 chr1 169681414 169681599 -27513833 + MIR SINE MIR 2 194 -68 3 1879 204 366 0 0 chr1 169681759 169681830 -27513602 - MIR3 SINE MIR -39 169 99 3 1879 374 278 229 0 chr1 169682425 169682569 -27512863 - MER5A DNA MER1_type 0 189 13 3 1879 346 244 54 22 chr1 169682604 169682696 -27512736 - B1F SINE Alu 0 149 55 3 1879 405 258 233 39 chr1 169682825 169683031 -27512401 + MLT1D LTR MaLR 63 308 -197 3 1879 231 228 17 17 chr1 169683788 169683846 -27511586 - RLTR13D3 LTR ERVK -81 1033 976 3 1879 376 70 27 27 chr1 169683917 169683990 -27511442 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 3 1879 509 279 149 11 chr1 169683990 169684164 -27511268 - B4 SINE B4 -43 249 52 3 1879 195 100 0 0 chr1 169685587 169685617 -27509815 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 1879 243 333 68 43 chr1 169687493 169687656 -27507776 - L3b LINE CR1 -155 327 161 3 1879 243 0 0 0 chr1 169688671 169688698 -27506734 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1879 384 256 11 0 chr1 169689891 169689981 -27505451 - PB1D10 SINE Alu -17 100 10 3 1879 241 347 29 67 chr1 169689985 169690090 -27505342 - L2 LINE L2 -528 2891 2791 3 1879 278 261 69 129 chr1 169690112 169690213 -27505219 + RSINE1 SINE B4 38 132 -33 3 1879 291 121 0 0 chr1 169690213 169690271 -27505161 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1879 349 245 9 73 chr1 169690363 169690473 -27504959 + B4A SINE B4 107 209 -83 3 1879 540 173 0 0 chr1 169693682 169693832 -27501600 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1879 332 193 8 0 chr1 169693865 169693984 -27501448 + (CA)n Simple_repeat Simple_repeat 2 121 0 3 1879 307 354 89 20 chr1 169694153 169694369 -27501063 + MIR SINE MIR 1 237 -31 3 1879 559 301 54 16 chr1 169694522 169694708 -27500724 - RMER30 DNA MER1_type -2 200 8 3 1879 249 340 94 0 chr1 169695594 169695700 -27499732 - PB1D10 SINE Alu -1 116 1 3 1879 215 106 0 41 chr1 169696378 169696427 -27499005 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 3 1879 378 42 0 0 chr1 169696446 169696494 -27498938 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1879 6342 36 0 0 chr1 169697311 169698050 -27497382 + L1Md_T LINE L1 5844 6582 0 3 1879 441 0 0 0 chr1 169698096 169698145 -27497287 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 3 1879 389 242 55 0 chr1 169698146 169698237 -27497195 - MIRb SINE MIR -67 201 106 3 1879 284 279 47 0 chr1 169698962 169699048 -27496384 + MIR SINE MIR 108 197 -65 3 1879 423 0 0 0 chr1 169699238 169699285 -27496147 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1879 681 13 0 0 chr1 169699285 169699363 -27496069 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1879 312 370 128 54 chr1 169701234 169701642 -27493790 - MLT1L LTR MaLR -3 607 170 3 1879 210 143 0 0 chr1 169701870 169701905 -27493527 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1879 493 214 190 11 chr1 169702191 169702375 -27493057 - L1M2 LINE L1 -2522 3621 3405 3 1879 5347 103 66 1 chr1 169702386 169703170 -27492262 - L1_Mus3 LINE L1 0 6638 5804 3 1879 1212 216 87 46 chr1 169703627 169703972 -27491460 - ORR1E LTR MaLR 0 359 1 3 1879 237 234 203 0 chr1 169704161 169704225 -27491207 - MER3 DNA MER1_type -119 90 14 3 1879 193 240 213 0 chr1 169704240 169704315 -27491117 - L3 LINE CR1 -972 3517 3427 3 1879 288 271 219 29 chr1 169704869 169705006 -27490426 - MIRc SINE MIR -95 173 11 3 1879 390 159 0 68 chr1 169705622 169705696 -27489736 - ORR1B1 LTR MaLR -1 393 325 3 1879 540 0 0 0 chr1 169705803 169705863 -27489569 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1879 211 255 0 19 chr1 169705867 169705919 -27489513 - ID4 SINE ID -13 70 20 3 1879 207 100 0 0 chr1 169706796 169706826 -27488606 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1879 1114 110 10 0 chr1 169706826 169707038 -27488394 + (CA)n Simple_repeat Simple_repeat 1 214 0 3 1879 486 0 0 0 chr1 169707428 169707482 -27487950 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1879 243 103 0 0 chr1 169707536 169707575 -27487857 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1879 184 236 17 52 chr1 169707702 169707760 -27487672 + MIR3 SINE MIR 107 162 -46 3 1879 441 331 141 12 chr1 169707743 169708070 -27487362 - L2 LINE L2 -572 2847 2479 3 1879 24 0 0 0 chr1 169708090 169708114 -27487318 + AT_rich Low_complexity Low_complexity 1 24 0 3 1879 515 294 75 0 chr1 169708116 169708262 -27487170 + B3A SINE B2 1 157 -41 3 1879 229 276 61 10 chr1 169708409 169708508 -27486924 + L1MA5 LINE L1 6174 6277 -23 3 1879 377 320 169 13 chr1 169708535 169708760 -27486672 - L2 LINE L2 -999 2420 2161 3 1879 1443 242 39 39 chr1 169708850 169709288 -27486144 - L1MB2 LINE L1 -279 5892 5455 3 1879 262 310 70 0 chr1 169709623 169709694 -27485738 - ID4_ SINE ID -2 81 6 3 1879 396 0 0 0 chr1 169710153 169710197 -27485235 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1879 1023 9 0 0 chr1 169710197 169710313 -27485119 + (GA)n Simple_repeat Simple_repeat 1 116 0 3 1879 270 329 102 59 chr1 169711307 169711543 -27483889 + Helitron2Na_Mam RC Helitron? 5 250 -74 3 1879 364 313 9 0 chr1 169713212 169713327 -27482105 - MLT2B3 LTR ERVL -438 116 1 3 1879 296 232 118 8 chr1 169713800 169713908 -27481524 - MIR SINE MIR -112 156 42 3 1879 198 224 0 0 chr1 169714675 169714724 -27480708 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1879 6187 21 0 3 chr1 169714938 169715639 -27479793 + L1Md_F2 LINE L1 5882 6580 -2 3 1879 1336 150 410 7 chr1 169716449 169716749 -27478683 - MTC LTR MaLR 0 421 1 3 1879 6119 157 73 33 chr1 169716749 169717958 -27477474 - MTC-int LTR MaLR 0 1258 2 3 1879 2302 176 5 5 chr1 169717958 169718335 -27477097 - MTC LTR MaLR -1 420 44 3 1879 313 331 106 0 chr1 169718560 169718702 -27476730 + HAL1-3A_ME LINE L1 2292 2448 -410 3 1879 521 265 0 50 chr1 169720293 169720432 -27475000 - RSINE1 SINE B4 -22 143 12 3 1879 324 0 0 0 chr1 169720518 169720554 -27474878 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1879 324 0 0 0 chr1 169720626 169720662 -27474770 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1879 249 33 0 0 chr1 169721827 169721857 -27473575 + (ATGGTG)n Simple_repeat Simple_repeat 4 33 0 3 1879 262 324 8 75 chr1 169722080 169722200 -27473232 - MLT1H2 LTR MaLR -303 186 75 3 1879 569 308 68 57 chr1 169722668 169722947 -27472485 + B4A SINE B4 11 292 0 3 1879 188 188 16 0 chr1 169722973 169723037 -27472395 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1879 379 237 0 50 chr1 169723213 169723293 -27472139 - B4 SINE B4 0 292 217 3 1879 468 0 0 0 chr1 169723348 169723400 -27472032 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1879 830 264 110 4 chr1 169723418 169723673 -27471759 - B4A SINE B4 -6 286 5 3 1879 412 296 9 0 chr1 169723684 169723792 -27471640 - PB1D10 SINE Alu -8 109 1 3 1879 185 304 0 0 chr1 169724011 169724057 -27471375 - L3 LINE CR1 -23 4466 4421 3 1879 2143 300 37 19 chr1 169724166 169724784 -27470648 - MER21B LTR ERV1 -141 722 94 3 1879 189 286 87 87 chr1 169724888 169725003 -27470429 - L3 LINE CR1 -186 4303 4189 3 1879 8619 26 0 1 chr1 169726363 169727338 -27468094 - L1Md_F2 LINE L1 -11 6571 5598 3 1879 529 37 0 47 chr1 169727356 169727442 -27467990 + (TCTCTG)n Simple_repeat Simple_repeat 2 83 0 3 1879 270 0 0 0 chr1 169727449 169727479 -27467953 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1879 476 273 0 29 chr1 169727479 169727581 -27467851 - RSINE1 SINE B4 -24 141 43 3 1879 215 371 36 0 chr1 169727806 169727956 -27467476 + MIRc SINE MIR 54 207 -55 3 1879 186 43 0 0 chr1 169728533 169728556 -27466876 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1879 557 28 14 0 chr1 169728902 169728973 -27466459 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1879 378 0 0 0 chr1 169731867 169731909 -27463523 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1879 661 252 35 0 chr1 169731912 169732055 -27463377 - B3A SINE B2 -50 148 1 3 1879 216 250 54 0 chr1 169732109 169732165 -27463267 - MER5B DNA MER1_type -87 91 33 3 1879 545 189 15 4 chr1 169733452 169733721 -27461711 + CT-rich Low_complexity Low_complexity 1 272 0 3 1879 243 0 0 0 chr1 169733721 169733748 -27461684 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1879 192 135 0 0 chr1 169733780 169733817 -27461615 + (CTTG)n Simple_repeat Simple_repeat 3 39 0 4 1879 363 23 0 0 chr1 169734692 169734736 -27460696 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1879 419 265 20 96 chr1 169734762 169734908 -27460524 + ID_B1 SINE B4 84 218 -6 4 1879 237 270 132 26 chr1 169735466 169735542 -27459890 - L2a LINE L2 -4 3422 3339 4 1879 420 117 0 0 chr1 169735796 169735873 -27459559 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1879 279 0 0 0 chr1 169736019 169736050 -27459382 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1879 267 309 53 53 chr1 169736068 169736201 -27459231 + MER5A DNA MER1_type 1 133 -56 4 1879 408 20 0 0 chr1 169736623 169736672 -27458760 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1879 205 312 108 15 chr1 169736941 169737071 -27458361 + MIR SINE MIR 2 143 -119 4 234 563 315 89 32 chr1 169738226 169738508 -27456924 - MLT1A0 LTR MaLR -4 361 64 4 1880 1151 259 142 3 chr1 169738521 169738874 -27456558 + MTD LTR MaLR 18 419 0 4 1880 353 224 15 0 chr1 169738874 169738941 -27456491 - MLT1A0 LTR MaLR -302 72 5 4 1880 635 101 6 67 chr1 169739010 169739190 -27456242 + CT-rich Low_complexity Low_complexity 3 171 0 4 1880 1290 40 11 6 chr1 169739195 169739369 -27456063 + (TTCTC)n Simple_repeat Simple_repeat 2 176 0 4 1880 252 238 0 0 chr1 169739377 169739440 -27455992 + CT-rich Low_complexity Low_complexity 2 64 0 4 1880 296 309 129 6 chr1 169739606 169739769 -27455663 - MIR3 SINE MIR -10 198 16 4 1880 853 289 63 4 chr1 169740037 169740308 -27455124 - B4A SINE B4 -4 288 2 4 1880 235 281 0 0 chr1 169740523 169740580 -27454852 - RMER15 LTR ERVL -109 466 410 4 1880 229 318 0 0 chr1 169740639 169740705 -27454727 + MER104 DNA Tc2 115 180 -1 4 1880 341 344 93 51 chr1 169741226 169741483 -27453949 - LTR33A_ LTR ERVL 0 531 264 4 1880 945 297 23 70 chr1 169741894 169741931 -27453501 - MT2A LTR ERVL -8 593 559 4 1880 833 91 22 22 chr1 169741931 169742111 -27453321 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1880 945 297 23 70 chr1 169742111 169742134 -27453298 - MT2A LTR ERVL -43 558 541 4 1880 558 0 0 0 chr1 169742134 169742196 -27453236 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1880 1285 212 79 57 chr1 169742196 169742597 -27452835 - MT2A LTR ERVL -61 540 1 4 1880 288 347 44 92 chr1 169742775 169743092 -27452340 + L2a LINE L2 3088 3389 -37 4 1880 633 118 0 0 chr1 169743233 169743352 -27452080 + (TC)n Simple_repeat Simple_repeat 1 119 0 4 1880 394 230 88 20 chr1 169743375 169743477 -27451955 - PB1D10 SINE Alu -8 109 1 4 1880 712 246 60 28 chr1 169745042 169745259 -27450173 - RCHARR1 DNA MER1_type -2 972 749 4 1880 567 299 6 68 chr1 169745250 169745426 -27450006 - RCHARR1 DNA MER1_type -758 216 52 4 1880 404 272 89 34 chr1 169745461 169745640 -27449792 + MER5A DNA MER1_type 1 189 0 4 1880 284 175 45 45 chr1 169746656 169746722 -27448710 - RMER30 DNA MER1_type -21 181 116 4 1880 246 62 0 0 chr1 169746743 169746775 -27448657 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1880 336 64 0 0 chr1 169746775 169746822 -27448610 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 1880 207 151 75 0 chr1 169746823 169746876 -27448556 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 4 1880 287 287 0 54 chr1 169746876 169746968 -27448464 - RMER30 DNA MER1_type -107 95 9 4 1880 292 267 66 16 chr1 169747551 169747734 -27447698 - RMER17D2 LTR ERVK -275 534 343 4 1880 271 322 74 34 chr1 169748531 169748679 -27446753 - LTR65 LTR ERV1 -224 445 292 4 1880 379 139 25 100 chr1 169749975 169750055 -27445377 - HAL1-3A_ME LINE L1 -809 2049 1976 4 1880 322 284 6 6 chr1 169750099 169750276 -27445156 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1880 1114 233 44 64 chr1 169750279 169750577 -27444855 - B4 SINE B4 0 292 1 4 1880 351 136 0 0 chr1 169751180 169751239 -27444193 + (GGA)n Simple_repeat Simple_repeat 2 60 0 4 1880 279 0 0 0 chr1 169751543 169751574 -27443858 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1880 265 385 68 0 chr1 169752098 169752215 -27443217 + MER58A DNA MER1_type 1 125 -99 4 1880 1261 236 3 61 chr1 169753844 169754137 -27441295 + Lx8 LINE L1 6921 7196 -277 4 1880 4468 18 0 0 chr1 169754137 169754630 -27440802 - MT2_Mm LTR ERVL 0 493 1 4 1880 319 0 0 0 chr1 169754630 169754668 -27440764 - MERVL-int LTR ERVL 0 5485 5448 4 1880 403 167 46 35 chr1 169754668 169754755 -27440677 - ORR1A3-int LTR MaLR -1323 640 553 4 1880 37790 19 10 0 chr1 169754755 169758937 -27436495 - MERVL-int LTR ERVL -125 5360 1139 4 1880 2733 22 0 3 chr1 169758930 169759244 -27436188 - MERVL-int LTR ERVL -5172 313 1 4 1880 3754 18 121 0 chr1 169759244 169759684 -27435748 - MT2_Mm LTR ERVL 0 493 1 4 1880 970 245 46 43 chr1 169759684 169759965 -27435467 + Lx8 LINE L1 7192 7473 0 4 1880 423 365 46 10 chr1 169760235 169760429 -27435003 - MIR SINE MIR -3 259 59 4 1880 309 308 8 57 chr1 169761329 169761453 -27433979 - L1M5 LINE L1 -390 5774 5657 4 1880 408 40 0 0 chr1 169762870 169762920 -27432512 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1880 429 292 97 30 chr1 169763482 169763750 -27431682 - B4 SINE B4 -5 287 2 4 1880 4485 14 2 0 chr1 169763968 169764460 -27430972 + MT2_Mm LTR ERVL 1 493 0 4 1880 48395 16 6 0 chr1 169764460 169769786 -27425646 + MERVL-int LTR ERVL 1 5360 -125 4 1880 403 167 46 35 chr1 169769786 169769873 -27425559 + ORR1A3-int LTR MaLR 553 640 -1323 4 1880 319 0 0 0 chr1 169769873 169769911 -27425521 + MERVL-int LTR ERVL 5448 5485 0 4 1880 4485 14 2 0 chr1 169769911 169770403 -27425029 + MT2_Mm LTR ERVL 1 493 0 4 1880 210 71 0 0 chr1 169770406 169770434 -27424998 + (CATA)n Simple_repeat Simple_repeat 4 31 0 4 1880 2596 284 25 16 chr1 169771668 169772379 -27423053 - Lx8 LINE L1 -498 6975 6258 4 1880 5020 69 18 11 chr1 169772378 169773038 -27422394 - Lx3_Mus LINE L1 -32 6977 6313 4 1880 490 245 92 54 chr1 169773208 169773502 -27421930 - Lx9 LINE L1 -1578 6066 5762 4 1880 207 100 0 0 chr1 169774462 169774492 -27420940 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1880 494 340 111 8 chr1 169775457 169775718 -27419714 + B4 SINE B4 3 290 -2 4 1880 441 0 0 0 chr1 169775756 169775805 -27419627 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1880 405 39 0 0 chr1 169777278 169777329 -27418103 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1880 249 57 0 0 chr1 169778114 169778149 -27417283 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 4 1880 196 276 77 44 chr1 169779399 169779490 -27415942 + MIRb SINE MIR 46 139 -129 4 1880 228 115 0 71 chr1 169780074 169780130 -27415302 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 4 1880 852 39 0 0 chr1 169780321 169780425 -27415007 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 1880 180 0 0 0 chr1 169780425 169780444 -27414988 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1880 379 201 228 54 chr1 169782479 169782663 -27412769 - B3 SINE B2 0 216 1 4 1880 782 261 40 18 chr1 169782663 169782886 -27412546 - B4A SINE B4 -62 230 3 4 1880 387 0 0 0 chr1 169782985 169783028 -27412404 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1880 522 0 0 0 chr1 169783028 169783085 -27412347 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1880 549 0 0 0 chr1 169783351 169783412 -27412020 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1880 681 13 0 0 chr1 169783412 169783489 -27411943 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1880 301 298 18 0 chr1 169783494 169783608 -27411824 + Lx6 LINE L1 7345 7460 0 4 1880 261 217 72 0 chr1 169783635 169783704 -27411728 + B4A SINE B4 215 288 -4 4 1880 504 81 0 0 chr1 169783728 169783802 -27411630 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1880 2893 66 21 16 chr1 169784236 169784621 -27410811 + L1Md_F2 LINE L1 6195 6581 -1 4 1880 27 29 0 0 chr1 169785490 169785524 -27409908 + AT_rich Low_complexity Low_complexity 1 34 0 4 1880 239 290 0 0 chr1 169785566 169785628 -27409804 - MER3 DNA MER1_type -99 110 49 4 1880 432 0 0 0 chr1 169786973 169787021 -27408411 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1880 1428 86 25 41 chr1 169787660 169787902 -27407530 - Lx LINE L1 -5 6649 6412 4 1880 350 220 131 36 chr1 169787951 169788088 -27407344 - Tigger5 DNA MER2_type -180 2226 2077 4 1880 862 299 109 69 chr1 169788187 169788391 -27407041 + L1MC3 LINE L1 6956 7173 -612 4 1880 270 0 0 0 chr1 169788391 169788421 -27407011 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1880 862 299 109 69 chr1 169788421 169788654 -27406778 + L1MC3 LINE L1 7174 7431 -354 4 1880 837 290 4 35 chr1 169788654 169788883 -27406549 + ID_B1 SINE B4 2 223 -1 4 1880 862 299 109 69 chr1 169788883 169789216 -27406216 + L1MC3 LINE L1 7432 7758 -27 4 1880 659 340 38 23 chr1 169789220 169789482 -27405950 - B4 SINE B4 -26 266 1 4 1880 725 304 55 39 chr1 169789488 169789851 -27405581 - Charlie1a DNA MER1_type -610 845 477 4 1880 959 260 94 10 chr1 169790342 169790630 -27404802 + ORR1E LTR MaLR 2 313 -46 4 1880 1417 188 118 3 chr1 169790796 169791127 -27404305 + ORR1D1 LTR MaLR 6 374 0 4 1880 224 273 228 20 chr1 169791196 169791297 -27404135 + RSINE1 SINE B4 4 125 -40 4 1880 261 298 15 117 chr1 169791801 169791938 -27403494 + Lx5 LINE L1 6911 7033 -17 4 1880 258 116 0 0 chr1 169791938 169791981 -27403451 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 4 1880 402 308 40 6 chr1 169794194 169794367 -27401065 - L1ME3B LINE L1 -403 5837 5659 4 1880 198 233 0 0 chr1 169795847 169795907 -27399525 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1880 357 278 55 9 chr1 169796063 169796172 -27399260 - B4A SINE B4 -177 115 2 4 1880 314 276 34 11 chr1 169796172 169796260 -27399172 - PB1D10 SINE Alu -5 112 23 4 1880 243 0 0 0 chr1 169797340 169797367 -27398065 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1880 387 0 0 0 chr1 169797367 169797409 -27398023 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1880 694 286 85 15 chr1 169797411 169797681 -27397751 - B4A SINE B4 -3 289 1 4 1880 244 303 15 96 chr1 169797709 169797844 -27397588 - MER63B DNA AcHobo -17 419 296 4 1880 2097 136 15 3 chr1 169798027 169798352 -27397080 - ORR1A4 LTR MaLR 0 329 1 4 1880 51 31 0 0 chr1 169798754 169798819 -27396613 + AT_rich Low_complexity Low_complexity 1 65 0 4 1880 812 327 108 42 chr1 169798877 169799302 -27396130 - MLT1E3 LTR MaLR -16 608 156 4 1880 1194 7 0 0 chr1 169799303 169799438 -27395994 + (TCTCCC)n Simple_repeat Simple_repeat 6 140 0 4 1880 250 328 0 0 chr1 169799438 169799502 -27395930 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 4 1880 313 275 99 8 chr1 169799508 169799629 -27395803 - B4A SINE B4 -7 285 154 4 1880 744 320 24 28 chr1 169799659 169799948 -27395484 - B4A SINE B4 -3 289 2 5 1880 481 296 116 6 chr1 169799958 169800131 -27395301 - MLT1E3 LTR MaLR -455 198 7 4 1880 180 77 0 0 chr1 169801515 169801541 -27393891 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1880 4144 199 56 106 chr1 169801806 169801929 -27393503 - RMER1A Other Other 0 1030 870 5 1880 258 32 0 0 chr1 169801929 169801960 -27393472 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1880 4144 208 55 106 chr1 169801960 169803258 -27392174 - RMER1A Other Other -161 869 8 5 1880 681 228 24 72 chr1 169804039 169804247 -27391185 + B3A SINE B2 1 198 0 5 1880 279 284 193 0 chr1 169807156 169807183 -27388249 + B1F1 SINE Alu 11 140 -9 5 1880 425 256 0 0 chr1 169807183 169807265 -27388167 + ID_B1 SINE B4 134 215 -9 5 1880 810 268 15 10 chr1 169807483 169807679 -27387753 - B3 SINE B2 -19 197 1 5 1880 248 303 30 0 chr1 169807722 169807821 -27387611 - MIRb SINE MIR -84 184 83 5 1880 798 202 6 40 chr1 169808971 169809146 -27386286 + B3 SINE B2 38 206 -10 5 1880 252 0 0 0 chr1 169809445 169809473 -27385959 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1880 1148 246 27 27 chr1 169809643 169809935 -27385497 - B4 SINE B4 0 292 1 5 1880 426 326 65 24 chr1 169810916 169811164 -27384268 + L2a LINE L2 2115 2372 -1047 5 1880 824 266 65 23 chr1 169811193 169811455 -27383977 + B4A SINE B4 2 274 -18 5 1880 1483 52 0 72 chr1 169811624 169811831 -27383601 + B2_Mm1a SINE B2 1 192 -1 5 1880 241 284 22 11 chr1 169812026 169812115 -27383317 + L2a LINE L2 2560 2649 -770 5 1880 196 303 137 16 chr1 169812131 169812255 -27383177 + L2a LINE L2 3026 3164 -262 5 1880 496 315 58 26 chr1 169812682 169812871 -27382561 - MLT2B5 LTR ERVL -337 264 70 5 1880 854 145 6 0 chr1 169813643 169813809 -27381623 + GA-rich Low_complexity Low_complexity 3 169 0 5 1880 294 50 0 0 chr1 169814404 169814444 -27380988 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1880 467 90 13 0 chr1 169814566 169814644 -27380788 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 5 1880 728 269 41 50 chr1 169814662 169814862 -27380570 + B4 SINE B4 21 216 -76 5 1880 240 35 0 0 chr1 169814862 169814891 -27380541 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1880 728 269 41 50 chr1 169814891 169814909 -27380523 + B4 SINE B4 217 237 -55 5 1880 813 272 103 0 chr1 169815453 169815714 -27379718 - B4A SINE B4 -4 288 1 5 1880 595 248 0 0 chr1 169816488 169816617 -27378815 - B1F SINE Alu -3 146 18 5 1880 301 17 33 49 chr1 169816746 169816807 -27378625 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 5 1880 868 222 99 5 chr1 169816817 169817030 -27378402 + MT2A LTR ERVL 211 443 -90 5 1880 434 325 63 33 chr1 169817644 169817915 -27377517 - L2c LINE L2 -16 3371 3093 5 1880 363 270 38 38 chr1 169817931 169818062 -27377370 + L3 LINE CR1 4346 4476 -13 5 1880 415 327 97 32 chr1 169819402 169819867 -27375565 + L1MC4a LINE L1 6069 6563 -1319 5 1880 988 197 223 47 chr1 169820044 169820144 -27375288 - Lx9 LINE L1 0 7644 7478 5 1880 557 94 12 0 chr1 169820144 169820229 -27375203 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1880 988 197 223 47 chr1 169820229 169820469 -27374963 - Lx9 LINE L1 -167 7477 7245 5 1880 411 329 67 70 chr1 169820502 169821129 -27374303 + L1MC4a LINE L1 6688 7312 -570 5 1880 221 182 23 0 chr1 169821394 169821438 -27373994 + (ATGGTG)n Simple_repeat Simple_repeat 5 49 0 5 1880 263 355 36 22 chr1 169821499 169821637 -27373795 - MIRc SINE MIR -78 190 51 5 1880 827 288 32 14 chr1 169821917 169822199 -27373233 + MLT1A0 LTR MaLR 23 309 -56 5 1880 333 0 0 0 chr1 169823946 169823983 -27371449 + (TTG)n Simple_repeat Simple_repeat 1 37 0 5 1880 288 0 0 0 chr1 169823983 169824015 -27371417 + (TGG)n Simple_repeat Simple_repeat 3 34 0 5 1880 242 214 0 12 chr1 169824365 169824450 -27370982 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1880 1413 39 0 0 chr1 169824610 169824790 -27370642 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1880 209 238 100 0 chr1 169825152 169825232 -27370200 + (CTAGGG)n Simple_repeat Simple_repeat 3 90 0 5 1880 396 195 92 50 chr1 169825537 169825656 -27369776 - B1F1 SINE Alu -1 148 25 5 1880 381 117 0 0 chr1 169826226 169826286 -27369146 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1880 896 307 51 38 chr1 169826925 169827197 -27368235 - L1MB5 LINE L1 -66 6105 5845 5 1880 405 0 0 0 chr1 169827197 169827242 -27368190 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1880 896 305 49 34 chr1 169827242 169827534 -27367898 - L1MB5 LINE L1 -330 5844 5540 5 1880 396 0 0 0 chr1 169827563 169827607 -27367825 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1880 683 217 83 0 chr1 169827617 169827774 -27367658 - B3 SINE B2 -43 173 4 5 1880 1132 290 64 47 chr1 169827863 169828289 -27367143 + MTE-int LTR MaLR 924 1361 -219 5 1880 1515 73 16 0 chr1 169828289 169828480 -27366952 + B2_Mm2 SINE B2 1 194 -1 5 1880 1132 290 64 47 chr1 169828480 169828538 -27366894 + MTE-int LTR MaLR 1362 1416 -164 5 1880 283 284 0 0 chr1 169828748 169828822 -27366610 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1880 218 234 0 21 chr1 169828886 169828934 -27366498 - RSINE1 SINE B4 -87 78 32 5 1880 239 338 15 23 chr1 169830532 169830665 -27364767 + CT-rich Low_complexity Low_complexity 4 135 0 5 1880 252 309 0 0 chr1 169830832 169830900 -27364532 - ID4_ SINE ID -4 79 12 5 1880 347 257 0 142 chr1 169830910 169831037 -27364395 - PB1D10 SINE Alu -8 109 1 5 1880 255 301 14 0 chr1 169831063 169831136 -27364296 - B4A SINE B4 -2 290 217 5 1880 265 269 49 37 chr1 169831125 169831206 -27364226 - ID SINE ID -135 89 8 5 1880 223 203 46 15 chr1 169832470 169832535 -27362897 - B1_Mus2 SINE Alu 0 147 81 5 1880 189 0 0 0 chr1 169833168 169833189 -27362243 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 5 1880 3152 14 0 0 chr1 169833873 169834219 -27361213 + ORR1A0 LTR MaLR 1 346 0 5 1880 187 226 0 0 chr1 169834239 169834292 -27361140 + MER5A DNA MER1_type 13 65 -124 5 1880 438 103 0 0 chr1 169835546 169835624 -27359808 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1880 342 0 0 0 chr1 169835624 169835662 -27359770 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1880 180 280 7 145 chr1 169835838 169835939 -27359493 - MIRb SINE MIR -34 234 152 5 1880 653 279 80 59 chr1 169835939 169836019 -27359413 - B4 SINE B4 0 292 225 5 1880 677 79 10 0 chr1 169836019 169836120 -27359312 + (TTA)n Simple_repeat Simple_repeat 2 103 0 5 1880 653 279 80 59 chr1 169836120 169836325 -27359107 - B4 SINE B4 -68 224 3 5 1880 180 280 7 145 chr1 169836325 169836361 -27359071 - MIRb SINE MIR -117 151 116 5 1880 351 0 0 0 chr1 169836378 169836417 -27359015 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1880 345 300 127 0 chr1 169836786 169836896 -27358536 + RSINE1 SINE B4 10 133 -32 5 1880 372 43 0 0 chr1 169836905 169836951 -27358481 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1880 324 0 0 0 chr1 169837369 169837405 -27358027 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1880 242 267 26 26 chr1 169837594 169837671 -27357761 - RSINE1 SINE B4 -78 87 11 5 1880 296 352 34 39 chr1 169838303 169838485 -27356947 - MIR SINE MIR -68 200 18 5 1880 663 294 138 33 chr1 169838888 169839345 -27356087 - MLT1D LTR MaLR 0 505 1 5 1880 508 282 85 63 chr1 169839554 169839956 -27355476 + MLT1C LTR MaLR 6 390 0 5 1880 181 369 0 67 chr1 169840173 169840263 -27355169 + MIRb SINE MIR 109 192 -76 5 1880 339 25 0 0 chr1 169840545 169840585 -27354847 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1880 626 340 70 12 chr1 169840589 169840848 -27354584 - B4 SINE B4 -12 280 7 5 1880 189 307 75 52 chr1 169841855 169841989 -27353443 + MER5A DNA MER1_type 31 167 -22 5 1880 276 100 0 0 chr1 169842074 169842114 -27353318 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1880 241 208 21 29 chr1 169842128 169842225 -27353207 - B1_Mus2 SINE Alu -28 92 1 5 1880 590 211 23 0 chr1 169842225 169842307 -27353125 - B4A SINE B4 -207 85 1 5 1880 423 277 41 24 chr1 169842970 169843140 -27352292 + RMER15 LTR ERVL 363 535 -40 5 1880 738 233 0 0 chr1 169843182 169843362 -27352070 + CT-rich Low_complexity Low_complexity 1 180 0 5 1880 578 215 165 6 chr1 169843364 169843528 -27351904 - B3 SINE B2 -4 212 23 5 1880 435 335 124 4 chr1 169843588 169843846 -27351586 + RMER15 LTR ERVL 273 561 -14 5 1880 249 109 0 0 chr1 169845383 169845429 -27350003 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1880 414 17 0 48 chr1 169845429 169845492 -27349940 - B1_Mm SINE Alu 0 147 88 5 1880 520 230 62 16 chr1 169845823 169845944 -27349488 + RSINE1 SINE B4 26 154 -11 5 1880 252 0 0 0 chr1 169845944 169845972 -27349460 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1880 893 136 87 17 chr1 169846057 169846229 -27349203 + BGLII_Mus LTR ERVK 1 184 -238 5 1880 297 0 0 0 chr1 169846231 169846264 -27349168 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1880 713 256 31 0 chr1 169846282 169846442 -27348990 - B3 SINE B2 -46 170 6 5 1880 396 0 0 0 chr1 169846457 169846501 -27348931 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1880 363 23 0 0 chr1 169846525 169846569 -27348863 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1880 921 312 30 8 chr1 169846569 169846834 -27348598 - B4A SINE B4 -19 273 3 5 1880 556 42 0 0 chr1 169847809 169847881 -27347551 - MTB LTR MaLR -2 398 327 5 1880 472 17 0 0 chr1 169847879 169847938 -27347494 - MTB LTR MaLR -348 59 1 5 1880 5851 110 83 78 chr1 169847939 169849030 -27346402 - MTB-int LTR MaLR -1 1097 1 5 1880 3123 63 12 12 chr1 169849030 169849430 -27346002 - MTB LTR MaLR 0 400 1 5 1880 1384 303 88 33 chr1 169851547 169852453 -27342979 - L1MB8 LINE L1 -12 6166 5179 5 1880 213 39 0 0 chr1 169854010 169854036 -27341396 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1880 453 320 71 48 chr1 169854044 169854254 -27341178 - B4 SINE B4 -73 219 5 5 1880 414 0 0 0 chr1 169856362 169856408 -27339024 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1880 712 302 34 38 chr1 169856433 169856695 -27338737 - B4A SINE B4 -3 289 29 5 1880 216 97 0 0 chr1 169856695 169856726 -27338706 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1880 218 56 0 27 chr1 169857349 169857386 -27338046 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1880 506 290 124 14 chr1 169859045 169859262 -27336170 + B4 SINE B4 41 281 -11 5 1880 432 0 0 0 chr1 169859402 169859450 -27335982 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1880 269 26 26 0 chr1 169860939 169860977 -27334455 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 6 1880 2334 99 15 6 chr1 169861059 169861385 -27334047 + ORR1A4 LTR MaLR 1 329 0 6 1880 1498 271 23 50 chr1 169861385 169861906 -27333526 + Lx8 LINE L1 6891 7397 -76 6 1880 328 120 0 0 chr1 169862453 169862503 -27332929 + URR1B DNA MER1_type 176 225 0 6 1880 1756 101 28 132 chr1 169862721 169863009 -27332423 + ORR1A3 LTR MaLR 1 278 -48 6 1880 7007 41 4 5 chr1 169863009 169863848 -27331584 + L1Md_F2 LINE L1 5745 6582 0 6 1880 1756 101 28 132 chr1 169863848 169863923 -27331509 + ORR1A3 LTR MaLR 279 326 0 6 1880 316 209 0 0 chr1 169865039 169865106 -27330326 - L1MC5 LINE L1 -269 7692 7626 6 1880 1445 229 43 29 chr1 169865206 169865580 -27329852 + MTD LTR MaLR 31 409 -10 6 1880 442 323 105 13 chr1 169865846 169866084 -27329348 + MLT1L LTR MaLR 8 267 -343 6 1880 730 139 15 0 chr1 169866555 169866692 -27328740 + CT-rich Low_complexity Low_complexity 1 139 0 6 1880 237 398 8 8 chr1 169867198 169867327 -27328105 + MER5B DNA MER1_type 1 129 -49 6 1880 180 0 0 0 chr1 169867329 169867349 -27328083 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1880 188 309 12 0 chr1 169867477 169867558 -27327874 - MER5B DNA MER1_type -90 88 7 6 1880 330 26 0 0 chr1 169868719 169868758 -27326674 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1881 382 293 15 8 chr1 169870620 169870754 -27324678 + RMER15 LTR ERVL 425 559 -16 6 1881 337 293 7 102 chr1 169871158 169871295 -27324137 - RSINE1 SINE B4 -34 131 8 6 1881 189 226 0 0 chr1 169871308 169871361 -27324071 + (CAA)n Simple_repeat Simple_repeat 2 54 0 6 1881 449 274 0 7 chr1 169871364 169871518 -27323914 + HAL1-2a_MD LINE L1 2353 2505 -519 6 1881 657 306 13 44 chr1 169871577 169871803 -27323629 + Tigger5 DNA MER2_type 1 219 -2187 6 1881 268 224 92 0 chr1 169871817 169871893 -27323539 + Tigger5 DNA MER2_type 2291 2373 -33 6 1881 23 33 0 0 chr1 169872055 169872085 -27323347 + AT_rich Low_complexity Low_complexity 1 30 0 6 1881 288 0 0 0 chr1 169872809 169872841 -27322591 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1881 246 196 59 0 chr1 169872944 169872995 -27322437 + tRNA-Ala-GCY_ tRNA tRNA 19 72 -3 6 1881 559 287 94 0 chr1 169873012 169873193 -27322239 + B3A SINE B2 1 198 0 6 1881 424 236 203 10 chr1 169873688 169873885 -27321547 - B4A SINE B4 -55 237 3 6 1881 429 20 0 0 chr1 169873893 169873943 -27321489 + (TTTTA)n Simple_repeat Simple_repeat 4 53 0 6 1881 286 340 47 60 chr1 169874788 169874938 -27320494 + MER20 DNA MER1_type 31 178 -41 6 1881 856 146 36 73 chr1 169874949 169875141 -27320291 + B2_Mm2 SINE B2 1 185 -10 6 1881 1147 116 54 16 chr1 169875149 169875333 -27320099 + B2_Mm2 SINE B2 5 195 0 6 1881 440 48 16 0 chr1 169875978 169876041 -27319391 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1881 27 29 0 0 chr1 169876737 169876771 -27318661 + AT_rich Low_complexity Low_complexity 1 34 0 6 1881 1356 138 9 30 chr1 169877041 169877272 -27318160 - URR1A DNA MER1_type 0 226 1 6 1881 328 367 27 7 chr1 169877279 169877427 -27318005 + MER58B DNA MER1_type 189 339 -2 6 1881 301 336 57 0 chr1 169877596 169877738 -27317694 - MIRb SINE MIR -43 225 59 6 1881 351 191 38 9 chr1 169878974 169879080 -27316352 + CT-rich Low_complexity Low_complexity 2 110 0 6 1881 951 282 22 51 chr1 169879627 169879900 -27315532 + B4 SINE B4 10 274 -18 6 1881 513 84 0 0 chr1 169879945 169880016 -27315416 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1881 346 311 47 51 chr1 169880437 169880656 -27314776 - MTE2b LTR MaLR -206 213 1 6 1881 574 239 62 48 chr1 169880743 169880888 -27314544 + B1_Mur2 SINE Alu 3 149 0 6 1881 306 273 78 52 chr1 169881152 169881268 -27314164 - ID_B1 SINE B4 -7 217 99 6 1881 432 0 0 0 chr1 169881620 169881668 -27313764 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1881 234 0 0 0 chr1 169881849 169881875 -27313557 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1881 411 183 0 0 chr1 169882191 169882273 -27313159 + CT-rich Low_complexity Low_complexity 2 83 0 6 1881 3881 166 25 64 chr1 169882765 169883856 -27311576 - L1_Mur3 LINE L1 -3913 1967 947 6 1881 244 321 27 18 chr1 169883854 169883965 -27311467 - L1_Mur3 LINE L1 -7497 231 120 6 1881 3090 132 4 8 chr1 169883989 169884479 -27310953 + L1_Mur3 LINE L1 4579 5066 -814 6 1881 284 325 70 29 chr1 169886100 169886271 -27309161 + MIR SINE MIR 8 185 -77 6 1881 525 335 95 37 chr1 169888449 169888722 -27306710 - MLT1J1 LTR MaLR -151 293 5 6 1881 24 53 0 0 chr1 169889246 169889284 -27306148 + AT_rich Low_complexity Low_complexity 1 38 0 6 1881 978 229 105 22 chr1 169889298 169889651 -27305781 + MTD LTR MaLR 8 419 0 6 1881 297 51 0 0 chr1 169890356 169890395 -27305037 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1881 642 37 0 0 chr1 169891251 169891332 -27304100 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1881 826 349 48 33 chr1 169892293 169892687 -27302745 + MLT1I LTR MaLR 12 411 0 6 1881 497 296 28 5 chr1 169892855 169893069 -27302363 + Lx9 LINE L1 7302 7520 -124 6 1881 1903 26 0 0 chr1 169893225 169893452 -27301980 + L1Md_F2 LINE L1 5360 5586 -297 6 1881 8597 23 1 2 chr1 169893452 169894447 -27300985 + L1Md_F2 LINE L1 5587 6580 -2 6 1881 215 278 0 18 chr1 169894533 169894588 -27300844 + CT-rich Low_complexity Low_complexity 3 56 0 6 1881 3771 55 12 10 chr1 169895172 169895667 -27299765 + Lx3_Mus LINE L1 6514 7009 0 6 1881 23 0 0 0 chr1 169895667 169895690 -27299742 + AT_rich Low_complexity Low_complexity 1 23 0 6 1881 720 75 28 9 chr1 169895843 169895950 -27299482 - B2_Mm2 SINE B2 -86 109 1 6 1881 797 239 53 5 chr1 169896044 169896250 -27299182 + B3 SINE B2 1 216 0 6 1881 2316 192 40 27 chr1 169896303 169896823 -27298609 - Lx9 LINE L1 -129 7515 6989 6 1881 4260 166 56 80 chr1 169896823 169897747 -27297685 - RMER19B LTR ERVK 0 902 1 6 1881 425 122 138 65 chr1 169897764 169897887 -27297545 + Lx9 LINE L1 7513 7644 0 6 1881 402 316 0 78 chr1 169898563 169898715 -27296717 + MTEa LTR MaLR 1 139 -240 6 1881 692 237 21 2 chr1 169898786 169898938 -27296494 - B3A SINE B2 -60 156 6 6 1881 303 28 0 0 chr1 169899505 169899541 -27295891 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1881 263 269 0 93 chr1 169901169 169901255 -27294177 + ID4 SINE ID 2 79 -4 6 1881 880 307 7 7 chr1 169901278 169901567 -27293865 + B4A SINE B4 2 290 -2 6 1881 200 250 12 106 chr1 169902545 169902630 -27292802 - MIR SINE MIR -73 189 113 6 1881 24 0 0 0 chr1 169902950 169902974 -27292458 + AT_rich Low_complexity Low_complexity 1 24 0 6 1881 228 356 37 28 chr1 169903096 169903203 -27292229 + MER5A DNA MER1_type 16 123 -66 6 1881 312 214 35 23 chr1 169903419 169903505 -27291927 + L1MC4a LINE L1 6593 6679 -1203 6 1881 211 286 8 8 chr1 169903507 169903641 -27291791 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 1881 215 193 35 0 chr1 169903609 169903666 -27291766 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 6 1881 638 229 0 6 chr1 169903652 169903832 -27291600 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1881 324 0 0 0 chr1 169904325 169904361 -27291071 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1881 326 260 54 103 chr1 169904800 169905023 -27290409 - L1M5 LINE L1 -2139 4007 3796 6 1881 207 0 0 0 chr1 169905334 169905357 -27290075 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1881 534 165 52 0 chr1 169905483 169905580 -27289852 + B1_Mur4 SINE Alu 36 137 -13 6 1881 300 333 52 7 chr1 169905593 169905729 -27289703 - L1MC LINE L1 -2669 3477 3336 6 1881 475 16 31 0 chr1 169906152 169906216 -27289216 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 6 1881 378 42 0 0 chr1 169906216 169906264 -27289168 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1881 496 336 84 29 chr1 169906312 169906655 -27288777 - ERVL-E-int LTR ERVL -4884 783 422 6 1881 1162 43 0 0 chr1 169906658 169906796 -27288636 + B1_Mus1 SINE Alu 5 142 -6 6 1881 872 87 8 0 chr1 169906798 169906925 -27288507 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 6 1881 670 92 73 9 chr1 169907927 169908037 -27287395 - B2_Mm1t SINE B2 -3 190 74 6 1881 599 143 10 0 chr1 169908017 169908115 -27287317 + B2_Mm2 SINE B2 7 105 -90 6 1881 301 252 90 0 chr1 169909746 169909857 -27285575 - L1MB2 LINE L1 -3 6168 6048 6 1881 1252 308 80 20 chr1 169910168 169910704 -27284728 - Kanga1 DNA Tc2 -1161 584 1 6 1881 429 323 94 18 chr1 169910709 169910879 -27284553 + MIR SINE MIR 80 262 0 6 1881 790 318 90 9 chr1 169910902 169911395 -27284037 - MLT1F2 LTR MaLR -7 553 5 6 1881 1113 326 107 23 chr1 169911834 169912346 -27283086 - MER21B LTR ERV1 -60 803 249 6 1881 673 267 175 17 chr1 169912853 169912917 -27282515 + B4A SINE B4 1 84 -208 6 1881 414 0 0 0 chr1 169912917 169912963 -27282469 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1881 673 267 175 17 chr1 169912963 169913138 -27282294 + B4A SINE B4 85 278 -14 6 1881 858 245 29 5 chr1 169914037 169914242 -27281190 - B3 SINE B2 -6 210 1 6 1881 291 243 37 28 chr1 169914373 169914481 -27280951 - ERVL-E-int LTR ERVL -1454 4213 4141 6 1881 243 292 63 31 chr1 169914971 169915130 -27280302 - L1MA4A LINE L1 -326 5977 5814 6 1881 204 97 0 0 chr1 169915145 169915176 -27280256 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1881 698 251 40 34 chr1 169915199 169915496 -27279936 - L1MA4A LINE L1 -524 5776 5478 6 1881 378 214 162 10 chr1 169915669 169915768 -27279664 - Lx6 LINE L1 -882 6578 6465 6 1881 443 138 156 0 chr1 169915772 169915881 -27279551 - L1_Mur3 LINE L1 -2506 3374 3249 6 1881 2292 208 87 15 chr1 169915876 169916122 -27279310 - Lx7 LINE L1 -1267 6429 6169 6 1881 758 89 9 0 chr1 169916122 169916234 -27279198 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 7 1881 2292 208 87 15 chr1 169916234 169916586 -27278846 - Lx7 LINE L1 -1528 6168 5789 6 1881 13155 150 64 16 chr1 169916607 169917012 -27278420 + L1_Mur3 LINE L1 2807 3225 -2655 7 1881 441 0 0 0 chr1 169917012 169917061 -27278371 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1881 13155 150 64 16 chr1 169917061 169919434 -27275998 + L1_Mur3 LINE L1 3226 5717 -163 7 1881 356 207 125 33 chr1 169919439 169919559 -27275873 + RMER20B LTR ERVK 282 412 -215 7 1881 1793 295 106 50 chr1 169919561 169920749 -27274683 - Lx7 LINE L1 -511 5369 4133 6 1881 216 0 0 0 chr1 169920749 169920773 -27274659 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1881 1793 293 106 50 chr1 169920773 169921141 -27274291 - Lx7 LINE L1 -1962 4181 3755 6 1881 3602 129 21 9 chr1 169921141 169921792 -27273640 + RLTR22_Mur LTR ERVK 1 805 -1043 7 1881 639 271 54 58 chr1 169921981 169922204 -27273228 + RMER12 LTR ERVK 1101 1322 0 7 1881 463 277 55 52 chr1 169922209 169922571 -27272861 - L1_Mur2 LINE L1 -2156 3721 3359 7 1881 12182 51 0 0 chr1 169922572 169924151 -27271281 + L1Md_F2 LINE L1 4008 5586 -297 7 1881 8072 47 3 0 chr1 169924151 169925142 -27270290 + L1Md_F2 LINE L1 5587 6580 -2 7 1881 399 351 28 12 chr1 169925205 169925456 -27269976 + Lx8 LINE L1 7219 7473 0 7 1881 980 311 80 38 chr1 169925470 169926565 -27268867 - Lx7 LINE L1 -2795 3348 2208 6 1881 274 138 17 17 chr1 169927061 169927120 -27268312 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 7 1881 2765 78 26 12 chr1 169927197 169927612 -27267820 - BGLII LTR ERVK 0 421 1 7 1881 1032 279 9 110 chr1 169929187 169929522 -27265910 - MTE2b LTR MaLR -78 301 1 7 1881 243 335 143 30 chr1 169929967 169930170 -27265262 + L2a LINE L2 2925 3150 -237 7 1881 880 300 40 9 chr1 169930569 169930787 -27264645 + B4 SINE B4 2 226 -66 7 1881 810 370 54 7 chr1 169930787 169931065 -27264367 + B4A SINE B4 2 292 0 7 1881 333 0 0 0 chr1 169931159 169931196 -27264236 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1881 1035 303 22 73 chr1 169931290 169931699 -27263733 + MER89 LTR ERV1 172 559 0 7 1881 321 26 0 0 chr1 169931954 169931992 -27263440 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 7 1881 270 0 0 0 chr1 169933876 169933906 -27261526 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 7 1881 2754 81 144 0 chr1 169933967 169934348 -27261084 + RLTR10C LTR ERVK 1 436 0 7 1881 1178 74 0 18 chr1 169934358 169934523 -27260909 + RLTR10-int LTR ERVK 41 202 -1785 7 1881 249 283 0 0 chr1 169934523 169934576 -27260856 + RLTR27 LTR ERVK 223 275 -34 7 1881 378 22 0 0 chr1 169934576 169934622 -27260810 + RLTR10-int LTR ERVK 225 270 -7311 7 1881 225 260 0 39 chr1 169934660 169934788 -27260644 + A-rich Low_complexity Low_complexity 2 124 0 7 1881 315 111 0 0 chr1 169934788 169934833 -27260599 + RLTR10-int LTR ERVK 93 137 -6405 7 1881 2488 66 18 0 chr1 169934836 169935171 -27260261 + RLTR10-int LTR ERVK 652 992 -995 7 1881 445 294 31 26 chr1 169935314 169935588 -27259844 + IAP-d-int LTR ERVK 825 1061 -5481 7 1881 1293 105 160 0 chr1 169935600 169935819 -27259613 + IAP-d-int LTR ERVK 5002 5255 -1287 7 1881 4030 118 12 1 chr1 169935819 169936502 -27258930 + IAPEY3-int LTR ERVK 6965 7680 0 7 1881 3404 58 7 29 chr1 169936502 169936948 -27258484 + RLTR10C LTR ERVK 1 436 0 7 1881 2355 90 11 11 chr1 169936971 169937332 -27258100 + L1_Mur2 LINE L1 4110 4470 -1407 7 1881 495 202 0 0 chr1 169937934 169938048 -27257384 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 1881 396 273 10 0 chr1 169938422 169938521 -27256911 + MER103 DNA DNA 44 143 -23 7 1881 194 297 15 30 chr1 169939486 169939552 -27255880 + L2 LINE L2 2720 2784 -635 7 1881 405 0 0 0 chr1 169939650 169939695 -27255737 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1881 207 0 0 0 chr1 169939695 169939717 -27255715 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1881 454 320 64 87 chr1 169939985 169940283 -27255149 + B4A SINE B4 2 292 0 7 1881 311 285 21 84 chr1 169941396 169941538 -27253894 - B4 SINE B4 0 292 160 7 1881 270 0 0 0 chr1 169941751 169941781 -27253651 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1881 23 0 0 0 chr1 169941984 169942007 -27253425 + AT_rich Low_complexity Low_complexity 1 23 0 7 1881 315 326 143 39 chr1 169943103 169943285 -27252147 + MIRb SINE MIR 31 231 -37 7 1881 1198 68 0 0 chr1 169943643 169943790 -27251642 + B1_Mus2 SINE Alu 1 147 0 7 1881 595 244 22 30 chr1 169943915 169944050 -27251382 + B1F SINE Alu 3 136 -13 7 1881 3294 83 42 0 chr1 169944050 169944507 -27250925 + L1_Mus3 LINE L1 6160 6635 -3 7 1881 371 242 8 0 chr1 169944525 169944645 -27250787 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 7 1881 269 340 129 69 chr1 169944645 169944993 -27250439 - LTR16C LTR ERVL -81 408 40 7 1881 420 20 0 0 chr1 169945225 169945274 -27250158 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1881 316 222 59 100 chr1 169945529 169945699 -27249733 + RMER15 LTR ERVL 1 163 -412 7 1881 222 264 118 36 chr1 169947217 169947327 -27248105 - MIRb SINE MIR -135 133 15 7 1881 225 312 10 30 chr1 169948675 169948774 -27246658 - RLTR12B LTR ERVK -43 485 389 7 1881 450 0 0 0 chr1 169948870 169948920 -27246512 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1881 387 0 0 0 chr1 169948920 169948962 -27246470 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1881 688 214 87 16 chr1 169948969 169949154 -27246278 - RLTR12B LTR ERVK -284 244 47 7 1881 1071 273 111 13 chr1 169949853 169950284 -27245148 - L1MB7 LINE L1 -52 6132 5649 7 1881 242 237 203 41 chr1 169950380 169950503 -27244929 - B3 SINE B2 -5 211 69 7 1881 615 239 105 25 chr1 169950511 169950741 -27244691 - L1MB7 LINE L1 -767 5397 5152 7 1881 3136 251 68 52 chr1 169950731 169951662 -27243770 - Lx9 LINE L1 -1 7643 6698 7 1881 327 271 101 37 chr1 169951696 169951884 -27243548 - L1MB7 LINE L1 -986 5160 4961 7 1881 251 242 12 2 chr1 169951914 169952000 -27243432 + MLT2B1 LTR ERVL 54 137 -419 7 1881 282 200 12 62 chr1 169952151 169952231 -27243201 + MLT2B1 LTR ERVL 401 476 -91 7 1881 3120 78 2 0 chr1 169952498 169952897 -27242535 - MTB LTR MaLR 0 400 1 7 1881 8371 44 0 3 chr1 169953188 169954426 -27241006 - L1Md_F2 LINE L1 -3 6579 5345 7 1881 184 308 19 0 chr1 169954713 169954765 -27240667 - L2b LINE L2 -330 3045 2993 7 1881 241 400 86 7 chr1 169955052 169955203 -27240229 + MLT1L LTR MaLR 311 473 -137 7 1881 252 330 136 14 chr1 169955327 169955613 -27239819 - L2b LINE L2 -526 2893 2573 7 1881 612 307 134 38 chr1 169955646 169955971 -27239461 - MTD LTR MaLR -46 375 8 7 1881 446 301 7 7 chr1 169957228 169957382 -27238050 + (CA)n Simple_repeat Simple_repeat 2 155 0 7 1881 467 331 0 0 chr1 169957433 169957611 -27237821 + (CA)n Simple_repeat Simple_repeat 1 178 0 7 1881 411 335 0 0 chr1 169957722 169957901 -27237531 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1881 453 36 0 0 chr1 169957968 169958023 -27237409 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1881 1663 202 78 28 chr1 169959670 169960067 -27235365 - MTD LTR MaLR -2 417 1 7 1881 486 0 0 0 chr1 169960281 169960335 -27235097 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1881 537 207 9 0 chr1 169962132 169962243 -27233189 - RSINE1 SINE B4 -50 115 4 7 1881 253 368 59 41 chr1 169962698 169962919 -27232513 - MIRb SINE MIR -8 260 36 7 1881 2527 71 6 9 chr1 169963334 169963662 -27231770 - ORR1A2 LTR MaLR 0 327 1 7 1881 312 333 0 44 chr1 169964400 169964535 -27230897 - MIRb SINE MIR -25 243 115 7 1881 1534 169 92 62 chr1 169964861 169965045 -27230387 + ORR1C2 LTR MaLR 3 185 -199 7 1881 999 117 0 0 chr1 169965045 169965225 -27230207 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1881 1534 169 92 62 chr1 169965225 169965411 -27230021 + ORR1C2 LTR MaLR 186 384 0 7 1881 198 0 0 0 chr1 169966242 169966264 -27229168 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 7 1881 432 0 0 0 chr1 169966822 169966870 -27228562 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 7 1881 612 233 69 19 chr1 169967407 169967638 -27227794 - L1MB4 LINE L1 -5200 1407 1144 7 1881 218 163 0 39 chr1 169968111 169968124 -27227308 + polypyrimidine Low_complexity Low_complexity 38 49 0 7 1881 1716 26 0 0 chr1 169968124 169968317 -27227115 - B2_Mm1t SINE B2 0 193 1 7 1881 218 163 0 39 chr1 169968317 169968354 -27227078 + polypyrimidine Low_complexity Low_complexity 1 37 0 7 1881 205 137 39 19 chr1 169968358 169968410 -27227022 + T-rich Low_complexity Low_complexity 1 53 0 7 1881 549 129 0 0 chr1 169968677 169968770 -27226662 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1881 180 0 0 0 chr1 169968851 169968871 -27226561 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1881 241 312 0 0 chr1 169968977 169969057 -27226375 - ID4 SINE ID -2 81 2 7 1881 765 209 0 0 chr1 169969463 169969611 -27225821 - B1_Mur3 SINE Alu -1 148 1 7 1881 288 0 0 0 chr1 169969636 169969668 -27225764 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 7 1881 306 0 0 0 chr1 169969978 169970012 -27225420 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1881 7848 67 1 2 chr1 169970109 169971333 -27224099 - L1_Mus2 LINE L1 0 6566 5345 7 1881 234 298 42 11 chr1 169971508 169971603 -27223829 - L1MB4 LINE L1 -6401 206 109 7 1881 445 317 101 62 chr1 169971606 169971882 -27223550 + B4A SINE B4 6 292 0 7 1881 465 301 26 19 chr1 169971976 169972132 -27223300 - B4 SINE B4 -133 159 3 7 1881 22 0 0 0 chr1 169972234 169972256 -27223176 + AT_rich Low_complexity Low_complexity 1 22 0 7 1881 204 40 0 0 chr1 169972586 169972611 -27222821 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1881 252 0 0 0 chr1 169972980 169973008 -27222424 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1881 351 0 0 0 chr1 169973525 169973564 -27221868 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1881 241 254 55 0 chr1 169973565 169973620 -27221812 - RSINE1 SINE B4 -42 123 66 7 1881 305 295 45 23 chr1 169973679 169973811 -27221621 + MIRb SINE MIR 38 172 -96 7 1881 244 234 0 0 chr1 169974239 169974286 -27221146 + MLT1H LTR MaLR 495 541 -8 7 1881 386 353 63 32 chr1 169974478 169974506 -27220926 - RSINE1 SINE B4 0 165 141 7 1881 942 35 0 0 chr1 169974506 169974620 -27220812 + (CA)n Simple_repeat Simple_repeat 1 114 0 7 1881 386 353 63 32 chr1 169974620 169974749 -27220683 - RSINE1 SINE B4 -25 140 3 7 1881 288 0 0 0 chr1 169975684 169975716 -27219716 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1881 401 0 20 0 chr1 169975795 169975844 -27219588 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1881 414 114 0 0 chr1 169977001 169977071 -27218361 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1881 876 264 131 26 chr1 169977728 169978071 -27217361 + MTEb LTR MaLR 1 379 0 7 1881 444 144 47 35 chr1 169978129 169978301 -27217131 + (CACCAT)n Simple_repeat Simple_repeat 4 177 0 7 1881 530 202 39 67 chr1 169978345 169978525 -27216907 + HAL1-2a_MD LINE L1 2345 2519 -505 7 1881 215 246 15 0 chr1 169979158 169979223 -27216209 + B4A SINE B4 16 81 -211 8 1881 1496 224 18 15 chr1 169979235 169979562 -27215870 - Lx5 LINE L1 -1 7049 6722 8 1881 1906 117 35 54 chr1 169979584 169979901 -27215531 + L1_Mur2 LINE L1 5424 5734 -143 8 1881 186 43 0 0 chr1 169979913 169979936 -27215496 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1881 238 349 93 9 chr1 169980062 169980104 -27215328 + B4 SINE B4 172 213 -79 8 1881 405 0 0 0 chr1 169980104 169980149 -27215283 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1881 238 349 93 9 chr1 169980149 169980213 -27215219 + B4 SINE B4 214 287 -5 8 1881 405 308 73 34 chr1 169980317 169980522 -27214910 - MIR SINE MIR -15 247 35 8 1881 293 125 74 8 chr1 169980563 169980684 -27214748 + (TA)n Simple_repeat Simple_repeat 1 129 0 8 1881 491 314 193 14 chr1 169980753 169981189 -27214243 + L1MD3 LINE L1 7442 7955 -40 8 1881 430 314 116 9 chr1 169981235 169981460 -27213972 + L1M2 LINE L1 4172 4420 -1723 8 1881 188 73 53 35 chr1 169981465 169981522 -27213910 + A-rich Low_complexity Low_complexity 2 59 0 8 1881 993 210 5 5 chr1 169981600 169981796 -27213636 + B3 SINE B2 5 200 -16 8 1881 265 250 118 0 chr1 169981838 169981906 -27213526 - B1_Mur3 SINE Alu -73 76 1 8 1881 2310 104 28 0 chr1 169982205 169982523 -27212909 - ORR1A2 LTR MaLR 0 327 1 8 1881 8741 144 97 29 chr1 169982523 169983759 -27211673 - ORR1A2-int LTR MaLR 0 1792 450 8 1881 1090 79 0 0 chr1 169983759 169983898 -27211534 - B1_Mus2 SINE Alu -8 139 1 8 1881 8741 144 97 29 chr1 169983898 169984338 -27211094 - ORR1A2-int LTR MaLR -1343 449 2 8 1881 2499 81 9 0 chr1 169984341 169984663 -27210769 - ORR1A2 LTR MaLR 0 327 3 8 1881 232 397 36 22 chr1 169984737 169984961 -27210471 - MLT1L LTR MaLR -368 242 16 8 1881 536 141 8 0 chr1 169984986 169985107 -27210325 + (TC)n Simple_repeat Simple_repeat 2 123 0 8 1881 22 0 0 0 chr1 169985711 169985733 -27209699 + AT_rich Low_complexity Low_complexity 1 22 0 8 1881 206 139 62 12 chr1 169985775 169985855 -27209577 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 8 1881 202 158 0 26 chr1 169985890 169985929 -27209503 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 8 1881 512 309 46 10 chr1 169986017 169986213 -27209219 - MER44B DNA MER2_type -266 284 82 8 1881 615 248 7 0 chr1 169986224 169986365 -27209067 - ID_B1 SINE B4 -1 223 82 8 1881 21 0 0 0 chr1 169986827 169986848 -27208584 + GC_rich Low_complexity Low_complexity 1 21 0 8 1881 451 125 10 40 chr1 169986941 169987041 -27208391 + CT-rich Low_complexity Low_complexity 1 97 0 8 1881 207 88 0 0 chr1 169987061 169987095 -27208337 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 8 1881 1073 288 44 65 chr1 169987227 169987613 -27207819 - MTE2b LTR MaLR 0 379 2 8 1881 376 316 95 70 chr1 169988189 169988431 -27207001 - MLT1E2 LTR MaLR -379 248 1 8 1881 207 0 0 0 chr1 169989364 169989387 -27206045 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1881 23 33 0 0 chr1 169989472 169989502 -27205930 + AT_rich Low_complexity Low_complexity 1 30 0 8 1881 1049 261 17 34 chr1 169989635 169989928 -27205504 + MTE2b LTR MaLR 59 346 -33 8 1881 1153 231 83 31 chr1 169989956 169990487 -27204945 + L1_Mur3 LINE L1 2687 3248 -2629 8 1881 207 0 0 0 chr1 169991083 169991106 -27204326 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1881 876 269 135 30 chr1 169991143 169991507 -27203925 + MTD LTR MaLR 1 402 -17 8 1881 354 23 0 0 chr1 169991649 169991692 -27203740 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1881 196 281 112 35 chr1 169991706 169991876 -27203556 + L2 LINE L2 2235 2417 -1002 8 1881 357 250 62 12 chr1 169992160 169992322 -27203110 + L1MEc LINE L1 685 854 -5546 8 1881 6289 122 4 2 chr1 169992329 169993253 -27202179 - Lx4B LINE L1 -77 5800 4875 8 1881 1906 132 37 40 chr1 169993254 169993608 -27201824 + Lx4B LINE L1 5836 6188 -870 8 1881 657 277 25 25 chr1 169993662 169993825 -27201607 + RSINE1 SINE B4 1 163 -2 8 1881 573 282 49 49 chr1 169994694 169994981 -27200451 + B4A SINE B4 1 287 -5 8 1881 201 39 0 0 chr1 169995060 169995086 -27200346 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1881 599 325 57 9 chr1 169995707 169995934 -27199498 + LTR41 LTR ERVL 45 282 -486 8 1881 580 335 83 73 chr1 169995990 169996483 -27198949 + LTR41 LTR ERVL 200 697 -71 8 1881 238 283 30 111 chr1 169996500 169996635 -27198797 - B1F2 SINE Alu 0 149 26 8 1881 825 87 0 0 chr1 169997865 169997980 -27197452 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 8 1881 521 81 0 34 chr1 169997997 169998086 -27197346 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1881 207 0 0 0 chr1 169998086 169998109 -27197323 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1881 447 262 0 0 chr1 169998110 169998213 -27197219 - B3A SINE B2 -94 104 2 8 1881 285 295 206 18 chr1 169998488 169998716 -27196716 - L3b LINE CR1 -92 390 120 8 1881 207 0 0 0 chr1 169999135 169999158 -27196274 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1882 293 301 55 45 chr1 170000479 170000681 -27194751 + L1M1 LINE L1 5329 5532 -771 1 1882 207 0 0 0 chr1 170000681 170000704 -27194728 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 1882 292 291 118 46 chr1 170000704 170000739 -27194693 + L1M1 LINE L1 5544 5583 -717 1 1882 281 200 206 7 chr1 170000907 170001053 -27194379 + L1MB1 LINE L1 5815 5989 -200 3 1882 314 294 76 88 chr1 170001226 170001476 -27193956 - MLT1J LTR MaLR 0 512 266 4 1882 583 219 35 35 chr1 170001524 170001666 -27193766 - RMER30 DNA MER1_type -1 201 60 5 1882 279 0 0 0 chr1 170001772 170001803 -27193629 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1882 561 301 53 5 chr1 170003026 170003213 -27192219 - B3A SINE B2 -2 196 1 7 1882 686 62 10 0 chr1 170003287 170003383 -27192049 + (GA)n Simple_repeat Simple_repeat 2 98 0 8 1882 1835 172 27 19 chr1 170004102 170004470 -27190962 - ORR1D1 LTR MaLR 0 374 4 9 1882 642 271 28 152 chr1 170004547 170004721 -27190711 - ORR1D2 LTR MaLR 0 370 212 1 1882 429 20 0 0 chr1 170004721 170004771 -27190661 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1882 642 271 28 152 chr1 170004771 170005018 -27190414 - ORR1D2 LTR MaLR -159 211 2 1 1882 725 280 100 48 chr1 170006235 170006505 -27188927 - B4A SINE B4 0 292 9 1 1882 940 277 46 39 chr1 170007906 170008191 -27187241 - B4A SINE B4 -4 288 2 1 1882 345 237 122 9 chr1 170010229 170010344 -27185088 + L2a LINE L2 3294 3421 -5 1 1882 420 8 0 137 chr1 170010464 170010610 -27184822 + (CCCCAG)n Simple_repeat Simple_repeat 4 129 0 1 1882 324 272 0 0 chr1 170010837 170010918 -27184514 - L1MA7 LINE L1 0 6291 6211 1 1882 190 361 24 24 chr1 170010996 170011081 -27184351 - MIR SINE MIR -134 128 44 1 1882 970 272 57 16 chr1 170013017 170013335 -27182097 - Lx8 LINE L1 -273 7200 6870 1 1882 258 341 89 0 chr1 170014665 170014788 -27180644 + MLT1B LTR MaLR 1 134 -256 1 1882 434 304 31 0 chr1 170014896 170015057 -27180375 + MLT1B LTR MaLR 225 390 0 1 1882 268 346 31 0 chr1 170015128 170015258 -27180174 + MIRc SINE MIR 90 223 -45 2 1882 203 0 37 0 chr1 170015528 170015555 -27179877 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1882 1050 176 23 19 chr1 170016534 170016748 -27178684 - B3 SINE B2 0 216 2 2 1882 216 360 11 11 chr1 170016828 170016918 -27178514 + MER5B DNA MER1_type 7 96 -82 2 1882 1069 182 76 9 chr1 170017248 170017459 -27177973 - URR1B DNA MER1_type 0 225 1 2 1882 251 303 70 10 chr1 170018012 170018112 -27177320 - RSINE1 SINE B4 -40 125 20 2 1882 276 30 0 0 chr1 170018584 170018617 -27176815 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1882 333 0 0 0 chr1 170018625 170018662 -27176770 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1882 407 139 39 44 chr1 170020115 170020296 -27175136 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1882 465 324 114 31 chr1 170020357 170020612 -27174820 - B4 SINE B4 -14 278 3 2 1882 340 248 37 81 chr1 170021077 170021213 -27174219 - MER103 DNA DNA -30 136 7 3 1882 333 0 0 0 chr1 170021270 170021307 -27174125 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1882 388 308 282 22 chr1 170021345 170021561 -27173871 - B4 SINE B4 -20 272 1 3 1882 324 0 0 0 chr1 170023491 170023527 -27171905 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1882 212 222 74 0 chr1 170023549 170023630 -27171802 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 1882 336 183 20 40 chr1 170023633 170023781 -27171651 + (CATA)n Simple_repeat Simple_repeat 1 145 0 3 1882 254 121 61 0 chr1 170023828 170023894 -27171538 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1882 266 256 57 24 chr1 170024542 170024666 -27170766 - MER121 Unknown Unknown -203 209 82 3 1882 189 178 0 0 chr1 170025511 170025556 -27169876 + (CAT)n Simple_repeat Simple_repeat 2 46 0 3 1882 323 326 21 0 chr1 170025557 170025652 -27169780 - PB1D10 SINE Alu -15 102 6 3 1882 434 259 40 62 chr1 170025824 170025969 -27169463 + MIR SINE MIR 61 212 -56 3 1882 474 263 135 89 chr1 170025969 170026228 -27169204 + B4 SINE B4 3 273 -19 4 1882 409 259 40 62 chr1 170026228 170026259 -27169173 + MIRb SINE MIR 213 240 -28 3 1882 261 0 0 0 chr1 170026294 170026323 -27169109 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1882 426 79 0 0 chr1 170028090 170028153 -27167279 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 4 1882 457 349 131 51 chr1 170028413 170028691 -27166741 + MLT2B1 LTR ERVL 4 370 -150 4 1882 559 99 0 0 chr1 170028691 170028772 -27166660 - RLTR23 LTR ERV1 0 430 350 4 1882 457 349 131 51 chr1 170028772 170028848 -27166584 + MLT2B1 LTR ERVL 371 473 -47 4 1882 273 250 114 0 chr1 170029057 170029145 -27166287 - Tigger14a DNA MER2_type -135 189 92 4 1882 655 199 22 0 chr1 170029382 170029518 -27165914 + B1_Mus2 SINE Alu 1 139 -8 4 1882 221 311 87 10 chr1 170029805 170029909 -27165523 + MIR3 SINE MIR 90 201 -7 4 1882 2980 140 21 13 chr1 170030246 170030769 -27164663 + RLTR1D LTR ERV1 62 588 -17 4 1882 2055 244 56 27 chr1 170030782 170031337 -27164095 + Lx8 LINE L1 6865 7435 -38 4 1882 2451 88 16 55 chr1 170031555 170031938 -27163494 - RLTR9A LTR ERVK 0 368 1 5 1882 333 318 144 6 chr1 170032637 170032811 -27162621 + MER2 DNA MER2_type 8 205 -140 5 1882 333 344 0 0 chr1 170033169 170033265 -27162167 + MER2 DNA MER2_type 247 342 -3 5 1882 204 263 130 13 chr1 170033479 170033556 -27161876 + MIRb SINE MIR 22 107 -161 5 1882 23 0 0 0 chr1 170033735 170033758 -27161674 + AT_rich Low_complexity Low_complexity 1 23 0 5 1882 1131 229 69 58 chr1 170035065 170035412 -27160020 + ORR1E LTR MaLR 1 351 -8 5 1882 592 175 24 40 chr1 170036293 170036418 -27159014 + B1_Mur1 SINE Alu 27 149 0 5 1882 570 137 0 0 chr1 170036563 170036658 -27158774 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 5 1882 261 0 0 0 chr1 170036776 170036805 -27158627 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1882 219 167 0 0 chr1 170038475 170038517 -27156915 + GA-rich Low_complexity Low_complexity 3 44 0 5 1882 3490 44 0 2 chr1 170038554 170038962 -27156470 - MTB_Mm LTR MaLR 0 407 1 5 1882 239 353 50 39 chr1 170039231 170039411 -27156021 - MIRb SINE MIR -52 216 35 6 1882 1473 112 13 39 chr1 170040294 170040526 -27154906 + URR1A DNA MER1_type 1 226 0 6 1882 306 164 0 0 chr1 170040704 170040759 -27154673 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1882 526 261 17 103 chr1 170040759 170040841 -27154591 - RSINE1 SINE B4 0 165 98 6 1882 315 49 0 0 chr1 170040841 170040882 -27154550 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 1882 526 261 17 103 chr1 170040882 170040974 -27154458 - RSINE1 SINE B4 -68 97 7 6 1882 773 295 152 0 chr1 170041122 170041424 -27154008 - Tigger7 DNA MER2_type -2115 376 29 6 1882 305 0 50 0 chr1 170041593 170041633 -27153799 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 6 1882 445 277 0 0 chr1 170041647 170041748 -27153684 - RSINE1 SINE B4 -63 102 2 6 1882 180 176 0 0 chr1 170042765 170042799 -27152633 + CT-rich Low_complexity Low_complexity 1 34 0 6 1882 376 229 24 0 chr1 170042799 170042882 -27152550 - PB1D7 SINE Alu -7 113 29 6 1882 472 43 14 28 chr1 170042986 170043058 -27152374 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 7 1882 300 119 0 0 chr1 170043514 170043573 -27151859 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1882 904 157 0 0 chr1 170044428 170044575 -27150857 - MTC LTR MaLR -245 176 30 7 1882 876 247 16 63 chr1 170044569 170044824 -27150608 + B4A SINE B4 32 274 -18 7 1882 324 0 0 0 chr1 170044896 170044932 -27150500 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1882 638 337 98 50 chr1 170045072 170045450 -27149982 - MLT2B1 LTR ERVL -124 396 1 7 1882 1259 179 9 5 chr1 170046064 170046288 -27149144 - URR1B DNA MER1_type 0 225 1 7 1882 450 36 0 0 chr1 170046609 170046665 -27148767 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 1882 728 190 0 6 chr1 170047213 170047377 -27148055 + (CA)n Simple_repeat Simple_repeat 2 164 0 7 1882 220 219 24 0 chr1 170047484 170047566 -27147866 + CT-rich Low_complexity Low_complexity 2 85 0 7 1882 734 356 56 24 chr1 170047929 170048461 -27146971 - ERVL-E-int LTR ERVL -2309 3358 2810 8 1882 342 321 101 47 chr1 170048784 170049042 -27146390 - ERVL-E-int LTR ERVL -3135 2626 2355 8 1882 206 384 53 0 chr1 170049689 170049822 -27145610 - L3 LINE CR1 -107 4382 4243 8 1882 736 284 106 27 chr1 170050126 170050495 -27144937 - L2a LINE L2 0 3426 3029 8 1882 227 310 58 0 chr1 170050514 170050601 -27144831 - MIRb SINE MIR -155 113 22 8 1882 434 354 32 28 chr1 170050940 170051158 -27144274 + MIRb SINE MIR 27 245 -23 8 1882 345 353 7 35 chr1 170051403 170051544 -27143888 + 7SK RNA RNA 13 149 -182 8 1882 236 341 78 22 chr1 170051972 170052152 -27143280 - MIR SINE MIR -64 204 15 8 1882 2646 37 12 9 chr1 170053500 170053827 -27141605 - L1Md_F2 LINE L1 0 6582 6255 8 1882 586 0 27 0 chr1 170054640 170054714 -27140718 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1882 333 47 0 0 chr1 170055648 170055691 -27139741 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1882 505 229 71 76 chr1 170057186 170057370 -27138062 + L1ME1 LINE L1 5850 6032 -1753 9 1882 486 0 0 0 chr1 170057444 170057498 -27137934 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 1882 259 244 12 49 chr1 170058217 170058299 -27137133 + MIRb SINE MIR 183 261 -7 9 1882 21 0 0 0 chr1 170058688 170058709 -27136723 + AT_rich Low_complexity Low_complexity 1 21 0 9 1882 266 135 0 37 chr1 170058862 170058916 -27136516 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 9 1882 408 209 28 0 chr1 170059146 170059249 -27136183 + PB1D10 SINE Alu 12 120 0 9 1882 278 95 12 75 chr1 170059265 170059345 -27136087 + (CAAA)n Simple_repeat Simple_repeat 3 77 0 9 1882 269 313 76 47 chr1 170059423 170059594 -27135838 + LTR16B1 LTR ERVL 144 319 -161 9 1882 2840 56 0 3 chr1 170059857 170060213 -27135219 + L1Md_F2 LINE L1 6226 6580 -2 9 1882 402 234 33 78 chr1 170060236 170060389 -27135043 - MTE2b LTR MaLR -26 353 208 9 1882 307 253 84 0 chr1 170060421 170060516 -27134916 - MTE2b LTR MaLR -137 242 140 9 1882 21 57 0 0 chr1 170060643 170060678 -27134754 + AT_rich Low_complexity Low_complexity 1 35 0 1 1882 204 0 83 0 chr1 170060985 170061021 -27134411 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 1882 558 289 0 7 chr1 170061961 170062111 -27133321 + B1F2 SINE Alu 1 149 0 1 1882 431 367 24 12 chr1 170062254 170062588 -27132844 + L3 LINE CR1 3623 3960 -529 1 1882 219 354 104 39 chr1 170062790 170062972 -27132460 + L3 LINE CR1 4217 4410 -79 1 1882 187 250 0 89 chr1 170063158 170063237 -27132195 - L2c LINE L2 -16 3371 3300 1 1882 549 242 31 8 chr1 170064333 170064462 -27130970 - B1_Mur2 SINE Alu -7 142 11 1 1882 208 121 0 0 chr1 170066060 170066093 -27129339 + (C)n Simple_repeat Simple_repeat 1 33 0 1 1882 189 318 76 0 chr1 170066530 170066596 -27128836 - MIR SINE MIR -117 145 75 1 1882 367 235 35 0 chr1 170066917 170067002 -27128430 + B1F SINE Alu 46 133 -16 1 1882 247 273 0 120 chr1 170066923 170067023 -27128409 + ID_B1 SINE B4 133 220 -4 1 1882 373 312 9 9 chr1 170067029 170067139 -27128293 + PB1D7 SINE Alu 3 112 -8 1 1882 302 355 49 5 chr1 170068113 170068314 -27127118 + MIRb SINE MIR 17 244 -24 1 1882 257 296 73 60 chr1 170069938 170070089 -27125343 - MER2 DNA MER2_type -57 288 136 1 1882 264 91 0 0 chr1 170070093 170070137 -27125295 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 1 1882 460 294 68 14 chr1 170070166 170070314 -27125118 - B3A SINE B2 -42 156 1 1 1882 832 134 7 0 chr1 170070762 170070911 -27124521 - Lx2 LINE L1 0 6997 6848 1 1882 210 204 0 22 chr1 170071030 170071075 -27124357 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1 1882 874 242 88 70 chr1 170071079 170071364 -27124068 - B4 SINE B4 -2 290 1 1 1882 703 274 103 16 chr1 170072650 170072902 -27122530 - B4 SINE B4 -18 274 1 1 1882 395 52 0 17 chr1 170072908 170072967 -27122465 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1882 246 360 29 17 chr1 170072989 170073164 -27122268 + L2 LINE L2 2691 2867 -552 1 1882 1794 179 40 48 chr1 170073219 170073594 -27121838 - ORR1D1 LTR MaLR -2 372 1 1 1882 1471 157 82 13 chr1 170073594 170073910 -27121522 - ORR1D1-int LTR MaLR 0 1370 1033 1 1882 346 181 14 14 chr1 170074163 170074236 -27121196 - RMER30 DNA MER1_type -40 162 90 1 1882 222 192 0 0 chr1 170074237 170074289 -27121143 + (TATG)n Simple_repeat Simple_repeat 3 54 0 1 1882 845 293 30 19 chr1 170074312 170074580 -27120852 - B4A SINE B4 -21 271 1 1 1882 419 347 6 11 chr1 170074863 170075038 -27120394 + CT-rich Low_complexity Low_complexity 4 177 0 1 1882 22 35 0 0 chr1 170077444 170077473 -27117959 + AT_rich Low_complexity Low_complexity 1 29 0 1 1882 266 301 12 12 chr1 170077581 170077665 -27117767 + GA-rich Low_complexity Low_complexity 4 87 0 1 1882 568 288 0 6 chr1 170077802 170077966 -27117466 - MIR SINE MIR -26 236 74 1 1882 600 315 191 32 chr1 170078400 170078935 -27116497 + MER21B LTR ERV1 137 756 -107 1 1882 617 58 12 0 chr1 170080268 170080354 -27115078 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1882 360 0 0 0 chr1 170082697 170082737 -27112695 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1882 234 0 0 0 chr1 170083349 170083375 -27112057 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1882 669 25 0 0 chr1 170083459 170083538 -27111894 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 1 1882 288 0 0 0 chr1 170084042 170084074 -27111358 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1882 309 109 0 0 chr1 170085129 170085175 -27110257 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1882 26 0 0 0 chr1 170085417 170085443 -27109989 + AT_rich Low_complexity Low_complexity 1 26 0 1 1882 266 80 0 91 chr1 170085599 170085654 -27109778 + T-rich Low_complexity Low_complexity 1 50 0 1 1882 33 0 0 0 chr1 170085769 170085802 -27109630 + AT_rich Low_complexity Low_complexity 1 33 0 1 1882 387 0 0 0 chr1 170086485 170086528 -27108904 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1882 351 0 0 0 chr1 170087367 170087406 -27108026 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 1882 5506 233 31 12 chr1 170089615 170090854 -27104578 + Lx7 LINE L1 6006 7267 -429 1 1882 23 0 0 0 chr1 170090863 170090886 -27104546 + AT_rich Low_complexity Low_complexity 1 23 0 1 1882 1189 61 0 7 chr1 170090888 170091036 -27104396 - B1_Mm SINE Alu 0 147 1 1 1882 252 174 174 0 chr1 170091167 170091236 -27104196 + Lx7 LINE L1 7612 7692 -4 1 1882 180 0 0 0 chr1 170091240 170091260 -27104172 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1882 221 196 18 0 chr1 170092716 170092772 -27102660 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 1 1882 468 0 0 0 chr1 170094503 170094555 -27100877 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1882 235 311 0 0 chr1 170095144 170095205 -27100227 + CT-rich Low_complexity Low_complexity 2 62 0 1 1882 453 284 0 0 chr1 170095214 170095316 -27100116 - PB1D10 SINE Alu -14 103 2 1 1882 347 336 0 0 chr1 170095222 170095329 -27100103 - ID_B1 SINE B4 -48 176 70 1 1882 216 355 43 29 chr1 170095517 170095656 -27099776 + L2 LINE L2 2756 2896 -523 1 1882 22 0 0 0 chr1 170097629 170097651 -27097781 + AT_rich Low_complexity Low_complexity 1 22 0 1 1882 513 0 0 0 chr1 170098727 170098784 -27096648 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1882 356 147 13 0 chr1 170099012 170099087 -27096345 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1882 518 290 172 42 chr1 170100918 170101278 -27094154 + L1ME4a LINE L1 5494 5900 -224 1 1882 333 82 0 0 chr1 170102194 170102243 -27093189 + (CAACC)n Simple_repeat Simple_repeat 3 51 0 1 1882 1065 141 125 5 chr1 170102296 170102496 -27092936 + URR1A DNA MER1_type 3 226 0 1 1882 216 236 83 0 chr1 170104150 170104222 -27091210 + MIRb SINE MIR 55 132 -136 1 1882 258 294 13 64 chr1 170105058 170105214 -27090218 + L1ME2z LINE L1 6110 6257 -187 1 1882 477 268 132 74 chr1 170105358 170105616 -27089816 - B4 SINE B4 -19 273 1 1 1882 341 300 75 0 chr1 170106399 170106519 -27088913 - MER3 DNA MER1_type -3 206 78 1 1882 192 321 24 12 chr1 170106819 170106901 -27088531 + L2c LINE L2 3303 3385 -2 1 1882 233 169 17 0 chr1 170107081 170107140 -27088292 + GA-rich Low_complexity Low_complexity 1 60 0 1 1882 455 236 56 24 chr1 170108004 170108130 -27087302 - B3 SINE B2 -1 215 86 1 1882 448 301 158 20 chr1 170112334 170112574 -27082858 - B4A SINE B4 -7 285 13 1 1882 246 125 0 0 chr1 170114162 170114210 -27081222 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1882 426 335 47 9 chr1 170118176 170118387 -27077045 - MER20 DNA MER1_type 0 219 1 1 1882 423 0 0 0 chr1 170121895 170121942 -27073490 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1 1882 1124 63 0 7 chr1 170121942 170122076 -27073356 - B1_Mus1 SINE Alu -12 136 3 1 1882 375 113 0 0 chr1 170122716 170122787 -27072645 + (A)n Simple_repeat Simple_repeat 1 71 0 1 1882 250 308 165 6 chr1 170122837 170123007 -27072425 + MamRep1161 DNA TcMar 122 318 -639 1 1882 207 325 43 17 chr1 170123580 170123696 -27071736 - L2 LINE L2 -968 2451 2333 1 1882 227 310 43 134 chr1 170123749 170123913 -27071519 - MER5A DNA MER1_type -39 150 2 1 1882 410 53 18 0 chr1 170124155 170124212 -27071220 + (GGGAGA)n Simple_repeat Simple_repeat 6 63 0 1 1882 25 0 0 0 chr1 170125280 170125305 -27070127 + AT_rich Low_complexity Low_complexity 1 25 0 1 1882 199 299 125 11 chr1 170126217 170126305 -27069127 + MIRb SINE MIR 45 142 -126 1 1882 910 80 22 0 chr1 170126507 170126644 -27068788 - B1_Mus1 SINE Alu 0 148 9 1 1882 396 0 0 0 chr1 170128166 170128210 -27067222 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1882 257 275 266 7 chr1 170128238 170128381 -27067051 - B3 SINE B2 -30 186 7 1 1882 381 296 17 0 chr1 170128697 170128812 -27066620 + MER3 DNA MER1_type 20 136 -73 1 1882 209 221 42 10 chr1 170129181 170129277 -27066155 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1882 253 334 18 12 chr1 170129392 170129511 -27065921 - MIRb SINE MIR -114 154 25 1 1882 226 324 0 14 chr1 170129786 170129858 -27065574 + L2c LINE L2 3290 3360 -27 1 1882 284 340 66 7 chr1 170130729 170130919 -27064513 + MLT1E LTR MaLR 457 654 0 1 1883 544 264 35 64 chr1 170131966 170132168 -27063264 - B3A SINE B2 0 198 3 1 1883 190 362 119 14 chr1 170134324 170134467 -27060965 - MIR3 SINE MIR -9 199 42 1 1883 787 227 18 62 chr1 170135291 170135516 -27059916 + B3 SINE B2 2 216 0 1 1883 189 107 0 0 chr1 170139587 170139615 -27055817 + (CCG)n Simple_repeat Simple_repeat 1 28 0 1 1883 228 184 311 28 chr1 170139936 170140042 -27055390 + L1MB3 LINE L1 5917 6052 -131 1 1883 278 222 63 0 chr1 170140045 170140108 -27055324 + ID_B1 SINE B4 93 159 -65 1 1883 201 239 0 0 chr1 170140110 170140156 -27055276 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1883 356 255 75 0 chr1 170140230 170140336 -27055096 + L1MB3 LINE L1 6061 6174 -9 1 1883 269 342 26 44 chr1 170142217 170142330 -27053102 - PB1D10 SINE Alu -1 116 6 1 1883 720 0 0 0 chr1 170143236 170143316 -27052116 + (GAA)n Simple_repeat Simple_repeat 2 81 0 1 1883 534 141 0 0 chr1 170147303 170147388 -27048044 - B1_Mur4 SINE Alu 0 150 66 1 1883 271 325 51 0 chr1 170147487 170147604 -27047828 + B1F SINE Alu 14 136 -13 1 1883 595 39 0 0 chr1 170148688 170148765 -27046667 - B1_Mus2 SINE Alu 0 147 71 1 1883 314 272 12 0 chr1 170148812 170148893 -27046539 - ID4_ SINE ID 0 83 2 1 1883 444 111 0 0 chr1 170150909 170150981 -27044451 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1883 267 31 0 0 chr1 170152081 170152113 -27043319 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1883 253 185 46 0 chr1 170152147 170152212 -27043220 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1883 302 404 0 7 chr1 170152290 170152437 -27042995 - B4A SINE B4 -130 162 17 2 1883 433 269 21 63 chr1 170152613 170152756 -27042676 - ID_B1 SINE B4 -2 222 86 2 1883 651 279 48 166 chr1 170154802 170155021 -27040411 + B4 SINE B4 1 217 -75 2 1883 255 61 0 0 chr1 170155021 170155054 -27040378 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1883 651 279 48 166 chr1 170155054 170155165 -27040267 + B4 SINE B4 218 292 0 2 1883 1092 99 6 6 chr1 170155244 170155406 -27040026 + B2_Mm1a SINE B2 2 163 -30 2 1883 207 88 0 0 chr1 170155406 170155440 -27039992 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 1883 437 236 53 45 chr1 170157603 170157736 -27037696 - ID_B1 SINE B4 0 224 91 2 1883 3873 59 17 0 chr1 170158134 170158612 -27036820 - L1_Mus1 LINE L1 0 6567 6082 2 1883 372 71 0 0 chr1 170159249 170159305 -27036127 + (TCTG)n Simple_repeat Simple_repeat 4 59 0 2 1883 1238 143 55 37 chr1 170159638 170159856 -27035576 + URR1B DNA MER1_type 4 225 0 2 1883 405 0 0 0 chr1 170160000 170160045 -27035387 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1883 285 51 0 0 chr1 170160999 170161038 -27034394 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 2 1883 27 62 0 0 chr1 170164026 170164074 -27031358 + AT_rich Low_complexity Low_complexity 1 48 0 2 1883 221 0 35 0 chr1 170164345 170164374 -27031058 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 1883 430 358 15 15 chr1 170165072 170165208 -27030224 - RSINE1 SINE B4 -2 163 28 2 1883 210 350 27 48 chr1 170166308 170166455 -27028977 + MIRb SINE MIR 35 178 -90 2 1883 369 43 0 0 chr1 170167712 170167759 -27027673 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1883 232 281 80 40 chr1 170168512 170168612 -27026820 + MLT1J LTR MaLR 112 215 -297 2 1883 375 78 0 0 chr1 170169517 170169568 -27025864 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1883 849 261 42 42 chr1 170169604 170169892 -27025540 - B4A SINE B4 -2 290 3 2 1883 273 281 0 15 chr1 170169922 170169987 -27025445 - ID4 SINE ID -18 65 2 2 1883 414 0 0 0 chr1 170170536 170170582 -27024850 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1883 183 205 0 0 chr1 170171480 170171519 -27023913 + GA-rich Low_complexity Low_complexity 2 40 0 2 1883 186 189 0 0 chr1 170172366 170172403 -27023029 + GA-rich Low_complexity Low_complexity 2 38 0 2 1883 193 250 104 0 chr1 170173015 170173063 -27022369 - L2b LINE L2 -23 3352 3300 2 1883 690 13 0 0 chr1 170175381 170175460 -27019972 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1883 201 39 0 0 chr1 170176702 170176728 -27018704 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1883 556 330 4 99 chr1 170178265 170178527 -27016905 + B4A SINE B4 56 292 0 2 1883 207 259 0 0 chr1 170178529 170178587 -27016845 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1883 330 26 0 0 chr1 170179038 170179077 -27016355 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1883 248 290 106 11 chr1 170179089 170179183 -27016249 - B4A SINE B4 -4 288 186 2 1883 602 302 50 0 chr1 170180160 170180362 -27015070 + B3 SINE B2 1 212 -4 2 1883 21 57 0 0 chr1 170180367 170180402 -27015030 + AT_rich Low_complexity Low_complexity 1 35 0 2 1883 580 245 126 4 chr1 170180423 170180661 -27014771 - Charlie1 DNA MER1_type -74 2707 2441 2 1883 680 104 8 0 chr1 170180678 170180803 -27014629 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 1883 392 263 52 103 chr1 170182725 170182931 -27012501 + MTEa LTR MaLR 146 374 -5 2 1883 205 132 0 50 chr1 170183073 170183113 -27012319 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 2 1883 3018 91 5 2 chr1 170184984 170185390 -27010042 - MTB_Mm LTR MaLR 0 407 1 2 1883 202 265 0 20 chr1 170185437 170185487 -27009945 + GA-rich Low_complexity Low_complexity 4 52 0 2 1883 352 347 26 46 chr1 170185977 170186128 -27009304 + RSINE1 SINE B4 18 165 0 2 1883 270 206 0 0 chr1 170186131 170186194 -27009238 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2 1883 210 309 15 0 chr1 170187225 170187293 -27008139 + MIRb SINE MIR 117 185 -83 2 1883 308 359 48 60 chr1 170188174 170188426 -27007006 + MLT1J LTR MaLR 9 257 -255 2 1883 531 0 0 0 chr1 170190112 170190171 -27005261 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1883 441 0 0 0 chr1 170190290 170190339 -27005093 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1883 475 242 161 65 chr1 170190786 170190954 -27004478 + B4 SINE B4 3 186 -106 2 1883 1137 111 0 0 chr1 170190954 170191164 -27004268 + (GGAA)n Simple_repeat Simple_repeat 1 210 0 2 1883 469 43 29 0 chr1 170191166 170191223 -27004209 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 2 1883 1371 62 0 0 chr1 170191223 170191401 -27004031 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 2 1883 469 43 29 0 chr1 170191401 170191413 -27004019 + (GGGA)n Simple_repeat Simple_repeat 1 12 0 2 1883 23 33 0 0 chr1 170191902 170191932 -27003500 + AT_rich Low_complexity Low_complexity 1 30 0 2 1883 279 0 0 0 chr1 170192052 170192083 -27003349 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1883 218 109 65 0 chr1 170192174 170192220 -27003212 + A-rich Low_complexity Low_complexity 3 51 0 2 1883 332 219 0 0 chr1 170192744 170192817 -27002615 + B3A SINE B2 1 73 -125 2 1883 340 285 102 126 chr1 170193020 170193197 -27002235 + L1ME2 LINE L1 5564 5762 -402 2 1883 1070 111 86 17 chr1 170193197 170193371 -27002061 + B2_Mm2 SINE B2 4 189 -6 2 1883 340 285 102 126 chr1 170193371 170193606 -27001826 + L1ME2 LINE L1 5763 5966 -198 2 1883 989 228 25 0 chr1 170194256 170194458 -27000974 - B3 SINE B2 -6 210 4 2 1883 303 71 0 0 chr1 170196659 170196701 -26998731 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1883 195 275 0 0 chr1 170197172 170197212 -26998220 + L2b LINE L2 3331 3370 -5 2 1883 616 250 47 35 chr1 170200660 170200917 -26994515 + MIR SINE MIR 3 262 0 2 1883 486 0 0 0 chr1 170202525 170202579 -26992853 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1883 429 295 18 18 chr1 170202838 170202952 -26992480 + RSINE1 SINE B4 37 150 -15 2 1883 195 42 0 0 chr1 170204337 170204361 -26991071 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1883 561 299 96 67 chr1 170207329 170207569 -26987863 + B4A SINE B4 6 252 -40 2 1883 405 81 0 0 chr1 170207607 170207669 -26987763 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1883 22 0 0 0 chr1 170208201 170208223 -26987209 + AT_rich Low_complexity Low_complexity 1 22 0 2 1883 332 289 29 0 chr1 170208270 170208374 -26987058 + L2a LINE L2 3280 3386 -40 2 1883 1192 128 0 62 chr1 170208461 170208669 -26986763 + B2_Mm2 SINE B2 1 195 0 2 1883 1891 62 4 30 chr1 170209530 170209795 -26985637 + L1_Mus1 LINE L1 6310 6567 0 2 1883 2034 88 78 3 chr1 170209907 170210239 -26985193 + RLTR9A LTR ERVK 1 357 -11 2 1883 283 75 93 19 chr1 170213740 170213794 -26981638 + Lx9 LINE L1 7584 7641 -3 2 1883 203 0 0 36 chr1 170213821 170213849 -26981583 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 2 1883 471 145 0 0 chr1 170213918 170214001 -26981431 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1883 678 25 0 0 chr1 170217315 170217395 -26978037 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1883 322 282 0 0 chr1 170217537 170217615 -26977817 + ID2 SINE ID 1 78 -5 2 1883 193 218 18 35 chr1 170219859 170219916 -26975516 + MIRc SINE MIR 112 167 -101 2 1883 344 158 13 0 chr1 170222117 170222193 -26973239 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1883 1136 75 0 0 chr1 170222786 170222932 -26972500 - B1_Mus2 SINE Alu 0 147 2 2 1883 384 69 0 0 chr1 170223581 170223602 -26971830 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1883 1145 75 7 0 chr1 170223602 170223748 -26971684 + B1_Mus2 SINE Alu 1 147 0 2 1883 384 69 0 0 chr1 170223748 170223784 -26971648 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1883 22 0 0 0 chr1 170224567 170224589 -26970843 + AT_rich Low_complexity Low_complexity 1 22 0 2 1883 330 296 202 48 chr1 170224665 170224853 -26970579 + MER20 DNA MER1_type 2 218 -1 2 1883 608 208 7 0 chr1 170224916 170225045 -26970387 + GA-rich Low_complexity Low_complexity 2 130 0 2 1883 1086 125 0 0 chr1 170225045 170225221 -26970211 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2 1883 608 208 7 0 chr1 170225221 170225235 -26970197 + polypurine Low_complexity Low_complexity 131 144 0 2 1883 1062 191 23 32 chr1 170225299 170225516 -26969916 + B3 SINE B2 2 216 0 2 1883 22 0 0 0 chr1 170226904 170226926 -26968506 + GC_rich Low_complexity Low_complexity 1 22 0 2 1883 206 212 15 0 chr1 170227294 170227340 -26968092 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 2 1883 330 67 0 0 chr1 170227340 170227385 -26968047 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1883 206 212 15 0 chr1 170227385 170227404 -26968028 + (CATATA)n Simple_repeat Simple_repeat 3 21 0 2 1883 393 22 0 0 chr1 170227650 170227696 -26967736 + (CAAT)n Simple_repeat Simple_repeat 1 46 0 2 1883 1940 314 88 10 chr1 170228083 170228496 -26966936 + Lx8 LINE L1 6584 7042 -431 2 1883 441 0 0 0 chr1 170228496 170228545 -26966887 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1883 1940 314 88 10 chr1 170228545 170228839 -26966593 + Lx8 LINE L1 7043 7346 -127 2 1883 815 292 5 0 chr1 170228878 170229073 -26966359 + B3 SINE B2 15 210 -6 2 1883 323 237 30 143 chr1 170229361 170229494 -26965938 - B1F1 SINE Alu -9 140 23 2 1883 230 288 13 161 chr1 170229494 170229510 -26965922 - ID_B1 SINE B4 -9 215 89 2 1883 555 344 0 0 chr1 170232926 170233089 -26962343 + RSINE1 SINE B4 3 165 0 2 1883 239 241 0 94 chr1 170233771 170233835 -26961597 + ID4_ SINE ID 25 82 -1 2 1883 584 322 6 32 chr1 170234263 170234420 -26961012 + RSINE1 SINE B4 3 155 -10 2 1883 189 0 0 0 chr1 170234625 170234646 -26960786 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1883 210 316 38 12 chr1 170237747 170237827 -26957605 + MIR SINE MIR 111 192 -70 3 1883 309 68 0 0 chr1 170239109 170239153 -26956279 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1883 213 140 17 34 chr1 170240122 170240181 -26955251 + A-rich Low_complexity Low_complexity 2 59 0 3 1883 432 255 28 0 chr1 170240826 170240932 -26954500 - PB1D10 SINE Alu -3 114 6 3 1883 244 312 107 96 chr1 170240932 170240995 -26954437 - B4 SINE B4 -79 195 35 3 1883 568 225 71 21 chr1 170241361 170241502 -26953930 + B1_Mur2 SINE Alu 1 148 -1 3 1883 3164 36 5 5 chr1 170241817 170242209 -26953223 + MTB LTR MaLR 1 392 -8 3 1883 651 267 74 35 chr1 170244018 170244220 -26951212 + B3 SINE B2 7 216 0 3 1883 504 0 0 0 chr1 170244241 170244297 -26951135 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 3 1883 577 142 230 0 chr1 170244299 170244412 -26951020 - B1_Mur3 SINE Alu -9 140 2 3 1883 216 285 129 68 chr1 170244590 170244737 -26950695 + MIRc SINE MIR 15 170 -98 3 1883 258 105 0 0 chr1 170245537 170245575 -26949857 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 3 1883 737 187 65 0 chr1 170246222 170246361 -26949071 - B1_Mur2 SINE Alu 0 149 2 3 1883 315 250 379 7 chr1 170246559 170246712 -26948720 + B3 SINE B2 1 210 -6 3 1883 198 211 0 0 chr1 170246978 170247016 -26948416 + L2c LINE L2 3342 3379 -8 3 1883 266 341 57 36 chr1 170247057 170247197 -26948235 + L3 LINE CR1 4104 4246 -243 3 1883 376 138 37 0 chr1 170247328 170247437 -26947995 + (TCTG)n Simple_repeat Simple_repeat 4 116 0 3 1883 329 313 0 0 chr1 170247442 170247509 -26947923 - ID2 SINE ID -7 76 10 3 1883 633 224 15 22 chr1 170247637 170247774 -26947658 + B1_Mur4 SINE Alu 2 137 -13 3 1883 663 13 0 0 chr1 170247775 170247851 -26947581 + (GGA)n Simple_repeat Simple_repeat 2 77 0 3 1883 333 100 0 0 chr1 170247851 170247900 -26947532 + (CAG)n Simple_repeat Simple_repeat 3 52 0 3 1883 686 208 145 26 chr1 170247909 170248102 -26947330 + B3 SINE B2 1 216 0 3 1883 22 35 0 0 chr1 170248385 170248414 -26947018 + AT_rich Low_complexity Low_complexity 1 29 0 3 1883 815 288 13 68 chr1 170250946 170251255 -26944177 + B4A SINE B4 1 292 0 3 1883 186 43 0 0 chr1 170251318 170251341 -26944091 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1883 311 328 36 21 chr1 170252095 170252235 -26943197 + MIRc SINE MIR 115 256 -12 3 1883 213 121 0 0 chr1 170253406 170253439 -26941993 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1883 182 91 0 29 chr1 170253617 170253651 -26941781 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3 1883 183 80 0 0 chr1 170254732 170254757 -26940675 + (GGGGA)n Simple_repeat Simple_repeat 5 29 0 3 1883 930 129 0 0 chr1 170255252 170255415 -26940017 + (CA)n Simple_repeat Simple_repeat 1 163 0 3 1883 558 0 0 0 chr1 170256323 170256385 -26939047 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1883 573 28 0 0 chr1 170257038 170257109 -26938323 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 3 1883 296 261 0 0 chr1 170257133 170257202 -26938230 + L1M3 LINE L1 2474 2542 -3598 3 1883 21 57 0 0 chr1 170258066 170258101 -26937331 + AT_rich Low_complexity Low_complexity 1 35 0 3 1883 491 309 118 0 chr1 170259124 170259302 -26936130 - Tigger12c DNA MER2_type -535 199 1 3 1883 619 172 70 2 chr1 170259513 170259638 -26935794 + B1_Mur4 SINE Alu 13 150 0 3 1883 612 40 0 0 chr1 170259654 170259729 -26935703 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 3 1883 579 85 0 0 chr1 170259749 170259831 -26935601 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1883 660 323 86 30 chr1 170260923 170261156 -26934276 - B4 SINE B4 -4 288 43 3 1884 303 28 0 0 chr1 170262825 170262861 -26932571 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1884 475 304 0 62 chr1 170263617 170263761 -26931671 + RSINE1 SINE B4 10 144 -21 3 1884 501 293 97 111 chr1 170264121 170264409 -26931023 + B4A SINE B4 2 285 -7 3 1884 847 214 63 24 chr1 170264565 170264771 -26930661 + B3 SINE B2 3 216 0 3 1884 379 315 28 62 chr1 170265420 170265596 -26929836 - MLT1N2 LTR MaLR -3 559 390 3 1884 450 0 0 0 chr1 170265881 170265931 -26929501 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1884 304 273 97 54 chr1 170265938 170266031 -26929401 - B4A SINE B4 -26 266 170 3 1884 420 324 45 40 chr1 170267723 170268011 -26927421 - B4A SINE B4 0 292 1 3 1884 437 76 15 0 chr1 170268681 170268747 -26926685 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 3 1884 33 25 0 0 chr1 170268772 170268812 -26926620 + AT_rich Low_complexity Low_complexity 1 40 0 3 1884 205 118 59 0 chr1 170269492 170269526 -26925906 + G-rich Low_complexity Low_complexity 1 36 0 3 1884 396 0 0 0 chr1 170269917 170269961 -26925471 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1884 262 0 26 26 chr1 170270276 170270315 -26925117 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1884 220 143 63 0 chr1 170270685 170270748 -26924684 + (TTA)n Simple_repeat Simple_repeat 3 69 0 3 1884 356 202 20 69 chr1 170270824 170270925 -26924507 + ORR1E LTR MaLR 55 150 -209 3 1884 250 281 0 0 chr1 170270916 170270973 -26924459 + ORR1E LTR MaLR 322 378 -1 3 1884 189 121 0 0 chr1 170271214 170271247 -26924185 + (CAT)n Simple_repeat Simple_repeat 3 35 0 3 1884 322 167 12 25 chr1 170271348 170271428 -26924004 + CT-rich Low_complexity Low_complexity 3 81 0 3 1884 189 0 0 0 chr1 170271704 170271725 -26923707 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1884 459 0 0 0 chr1 170272838 170272889 -26922543 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1884 477 0 0 0 chr1 170272889 170272941 -26922491 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1884 198 0 0 0 chr1 170274218 170274240 -26921192 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1884 387 0 0 0 chr1 170274240 170274282 -26921150 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1884 873 167 129 57 chr1 170274975 170275185 -26920247 - URR1A DNA MER1_type -1 225 1 3 1884 566 307 6 33 chr1 170275431 170275613 -26919819 - MER5B DNA MER1_type 0 178 2 3 1884 205 222 15 60 chr1 170275914 170275981 -26919451 + CT-rich Low_complexity Low_complexity 3 66 0 3 1884 240 245 111 56 chr1 170276110 170276218 -26919214 - Charlie15a DNA MER1_type -20 204 91 3 1884 1292 87 11 16 chr1 170276589 170276777 -26918655 + B2_Mm2 SINE B2 3 189 -6 3 1884 359 306 9 35 chr1 170276793 170276908 -26918524 + PB1D7 SINE Alu 1 112 -8 3 1884 579 288 45 71 chr1 170277218 170277416 -26918016 - B3A SINE B2 -4 194 2 3 1884 607 212 0 26 chr1 170277416 170277517 -26917915 + B3 SINE B2 112 209 -7 3 1884 455 294 89 61 chr1 170277673 170277854 -26917578 - MIRc SINE MIR -74 202 14 3 1884 192 341 131 31 chr1 170279710 170279840 -26915592 + MIRb SINE MIR 34 176 -92 3 1884 697 286 28 42 chr1 170281492 170281707 -26913725 - ID_B1 SINE B4 -1 223 12 3 1884 340 211 41 21 chr1 170282447 170282592 -26912840 + CT-rich Low_complexity Low_complexity 4 151 0 3 1884 959 194 73 5 chr1 170283034 170283226 -26912206 - B3 SINE B2 -10 206 2 3 1884 687 260 0 28 chr1 170283858 170284036 -26911396 + B4A SINE B4 97 269 -23 3 1884 315 71 0 0 chr1 170284827 170284869 -26910563 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1884 221 171 24 0 chr1 170287272 170287313 -26908119 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1884 693 0 0 0 chr1 170287622 170287699 -26907733 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1884 217 0 61 0 chr1 170288868 170288901 -26906531 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1884 185 315 36 18 chr1 170289430 170289485 -26905947 + L3 LINE CR1 4190 4245 -244 3 1884 256 264 157 19 chr1 170289848 170289956 -26905476 - MIR SINE MIR -129 133 11 3 1884 506 167 23 16 chr1 170291983 170292111 -26903321 + G-rich Low_complexity Low_complexity 2 130 0 3 1884 1226 250 11 17 chr1 170292111 170292391 -26903041 + B4 SINE B4 1 275 -17 3 1884 408 207 0 0 chr1 170292434 170292550 -26902882 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 1884 479 274 74 2 chr1 170292904 170293061 -26902371 + MIRc SINE MIR 2 180 -88 3 1884 228 272 84 37 chr1 170294042 170294149 -26901283 + MIR3 SINE MIR 85 196 -12 3 1884 234 304 19 56 chr1 170295958 170296066 -26899366 + RMER12 LTR ERVK 727 830 -492 3 1884 1067 268 14 34 chr1 170296072 170296369 -26899063 - B4A SINE B4 0 292 2 3 1884 23 0 0 0 chr1 170296969 170296992 -26898440 + AT_rich Low_complexity Low_complexity 1 23 0 3 1884 825 275 39 24 chr1 170297703 170297908 -26897524 + ID_B1 SINE B4 1 208 -16 3 1884 378 0 0 0 chr1 170297980 170298022 -26897410 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1884 348 24 0 0 chr1 170298484 170298525 -26896907 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1884 506 213 55 39 chr1 170298856 170298983 -26896449 + B3 SINE B2 54 182 -34 3 1884 24 0 0 0 chr1 170299487 170299511 -26895921 + AT_rich Low_complexity Low_complexity 1 24 0 3 1884 279 79 0 0 chr1 170300224 170300262 -26895170 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1884 302 341 57 86 chr1 170300283 170300562 -26894870 - Charlie23a DNA MER1_type -68 271 1 3 1884 579 29 0 0 chr1 170301838 170301907 -26893525 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1884 1118 43 0 0 chr1 170301973 170302111 -26893321 - B1_Mus1 SINE Alu -1 147 10 3 1884 23 0 0 0 chr1 170303638 170303661 -26891771 + AT_rich Low_complexity Low_complexity 1 23 0 3 1884 506 297 23 38 chr1 170304486 170304619 -26890813 + RSINE1 SINE B4 4 134 -31 4 1884 210 118 0 0 chr1 170304638 170304672 -26890760 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1884 427 241 18 140 chr1 170304681 170304701 -26890731 + ID_B1 SINE B4 78 218 -3 4 1884 654 230 0 43 chr1 170304701 170304842 -26890590 + B1_Mur1 SINE Alu 9 143 -6 4 1884 192 210 31 31 chr1 170306712 170306776 -26888656 + MIR3 SINE MIR 3 66 -142 4 1884 386 265 92 56 chr1 170307118 170307314 -26888118 + MER2 DNA MER2_type 113 315 -30 4 1884 363 23 0 0 chr1 170307366 170307410 -26888022 + (TCCTG)n Simple_repeat Simple_repeat 2 45 0 4 1884 687 200 62 0 chr1 170307414 170307544 -26887888 - B1_Mur4 SINE Alu -7 143 6 4 1884 326 286 83 83 chr1 170307544 170307572 -26887860 - B4 SINE B4 -68 220 63 4 1884 295 250 39 29 chr1 170307594 170307697 -26887735 - MER103 DNA DNA -8 158 55 4 1884 216 122 0 0 chr1 170307737 170307778 -26887654 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1884 426 319 49 12 chr1 170307911 170308073 -26887359 - MamSINE1 SINE tRNA -121 169 2 4 1884 290 378 36 46 chr1 170308239 170308458 -26886974 + MIRb SINE MIR 35 251 -17 4 1884 219 263 0 0 chr1 170308464 170308521 -26886911 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 4 1884 386 307 45 68 chr1 170308594 170308610 -26886822 - ID_B1 SINE B4 -52 240 184 4 1884 460 293 56 14 chr1 170308610 170308752 -26886680 - B1F SINE Alu -1 148 1 4 1884 386 307 45 68 chr1 170308752 170308785 -26886647 - ID_B1 SINE B4 -52 183 52 4 1884 378 0 0 0 chr1 170308828 170308870 -26886562 + (TTC)n Simple_repeat Simple_repeat 3 44 0 4 1884 477 0 0 0 chr1 170308870 170308923 -26886509 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1884 234 0 0 0 chr1 170309797 170309823 -26885609 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1884 495 33 0 0 chr1 170310945 170311006 -26884426 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1884 370 387 50 5 chr1 170312124 170312342 -26883090 - MIR SINE MIR -22 240 13 4 1884 24 0 0 0 chr1 170313727 170313751 -26881681 + AT_rich Low_complexity Low_complexity 1 24 0 4 1884 250 281 0 0 chr1 170315096 170315153 -26880279 + (CGTG)n Simple_repeat Simple_repeat 1 57 0 4 1884 315 0 0 0 chr1 170315348 170315383 -26880049 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1884 185 258 95 76 chr1 170316397 170316502 -26878930 - L2b LINE L2 -4 3371 3265 4 1884 255 331 130 8 chr1 170316649 170316780 -26878652 - L2c LINE L2 -54 3333 3163 4 1884 24 53 0 0 chr1 170318461 170318499 -26876933 + AT_rich Low_complexity Low_complexity 1 38 0 4 1884 22 56 0 0 chr1 170318631 170318667 -26876765 + AT_rich Low_complexity Low_complexity 1 36 0 4 1884 1167 248 17 23 chr1 170318817 170319200 -26876232 - Lx9 LINE L1 -1619 6025 5606 4 1884 3323 277 92 15 chr1 170319221 170320345 -26875087 + Lx9 LINE L1 6367 7577 -67 4 1884 219 227 0 175 chr1 170320392 170320472 -26874960 + B4 SINE B4 38 103 -189 4 1884 184 272 43 112 chr1 170321209 170321325 -26874107 + L2c LINE L2 3280 3387 0 4 1884 538 298 150 31 chr1 170324452 170324712 -26870720 - B4A SINE B4 0 292 2 4 1884 245 29 0 29 chr1 170325339 170325374 -26870058 + (TAA)n Simple_repeat Simple_repeat 1 34 0 4 1884 186 150 0 0 chr1 170325693 170325733 -26869699 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1884 351 287 54 8 chr1 170325861 170325991 -26869441 + MIRc SINE MIR 120 255 -13 4 1884 488 263 188 109 chr1 170326342 170326483 -26868949 + B4A SINE B4 86 248 -44 4 1884 1696 16 0 20 chr1 170326483 170326680 -26868752 - B2_Mm1a SINE B2 0 193 1 4 1884 488 263 188 109 chr1 170326680 170326730 -26868702 + B4A SINE B4 249 292 0 4 1884 238 284 142 38 chr1 170326882 170326902 -26868530 - PB1D10 SINE Alu 0 117 1 4 1884 250 325 58 35 chr1 170326902 170326988 -26868444 - ID_B1 SINE B4 -55 169 82 4 1884 1788 194 24 27 chr1 170327035 170327406 -26868026 + ORR1D1 LTR MaLR 1 370 -4 4 1884 703 232 90 10 chr1 170327464 170327664 -26867768 + ID_B1 SINE B4 2 217 -7 4 1884 228 111 0 0 chr1 170327665 170327701 -26867731 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 4 1884 522 219 227 47 chr1 170327835 170328007 -26867425 + B3 SINE B2 1 203 -13 4 1884 319 125 0 0 chr1 170328007 170328049 -26867383 - HAL1-3A_ME LINE L1 -841 2017 1976 4 1884 393 22 0 0 chr1 170328049 170328095 -26867337 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1884 794 78 0 0 chr1 170328443 170328546 -26866886 + B1_Mus2 SINE Alu 45 147 0 4 1884 465 103 0 0 chr1 170328561 170328629 -26866803 + (GGA)n Simple_repeat Simple_repeat 3 70 0 4 1884 891 0 0 0 chr1 170328629 170328728 -26866704 + (GAGAA)n Simple_repeat Simple_repeat 3 101 0 4 1884 383 258 136 13 chr1 170330758 170330987 -26864445 + MER33 DNA MER1_type 8 278 -46 4 1884 1019 207 33 9 chr1 170331460 170331670 -26863762 + B3 SINE B2 1 215 -1 4 1884 215 325 0 0 chr1 170332720 170332803 -26862629 + C-rich Low_complexity Low_complexity 1 83 0 4 1884 207 288 49 12 chr1 170333565 170333646 -26861786 + MIRb SINE MIR 107 190 -78 4 1884 471 113 0 0 chr1 170333976 170334047 -26861385 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1884 1039 112 11 6 chr1 170334047 170334226 -26861206 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1884 3210 65 7 0 chr1 170334548 170334951 -26860481 - L1_Mus2 LINE L1 -2 6564 6159 4 1884 644 274 53 93 chr1 170335091 170335393 -26860039 + B4 SINE B4 3 292 0 4 1884 561 30 0 0 chr1 170336037 170336104 -26859328 + (TCC)n Simple_repeat Simple_repeat 2 68 0 4 1884 180 125 0 0 chr1 170336322 170336354 -26859078 + (GGGGA)n Simple_repeat Simple_repeat 2 33 0 4 1884 519 123 0 0 chr1 170336409 170336490 -26858942 + (A)n Simple_repeat Simple_repeat 1 81 0 4 1884 202 194 0 0 chr1 170336705 170336741 -26858691 + CT-rich Low_complexity Low_complexity 1 36 0 4 1884 222 118 0 0 chr1 170336741 170336775 -26858657 + (TTCG)n Simple_repeat Simple_repeat 2 35 0 4 1884 465 19 0 0 chr1 170337095 170337149 -26858283 + (TAA)n Simple_repeat Simple_repeat 2 55 0 4 1884 567 0 0 0 chr1 170337787 170337850 -26857582 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1884 471 292 13 39 chr1 170338393 170338546 -26856886 + RSINE1 SINE B4 1 149 -16 4 1884 664 31 20 20 chr1 170338757 170338856 -26856576 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 4 1884 1098 189 29 10 chr1 170341390 170341598 -26853834 + B3 SINE B2 5 216 0 4 1884 225 338 14 0 chr1 170342515 170342589 -26852843 - L2c LINE L2 -87 3300 3226 4 1884 23 0 0 0 chr1 170342593 170342616 -26852816 + AT_rich Low_complexity Low_complexity 1 23 0 4 1884 254 236 0 0 chr1 170344303 170344358 -26851074 + (CCTG)n Simple_repeat Simple_repeat 3 57 0 4 1884 480 35 0 0 chr1 170347659 170347717 -26847715 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 1884 26 30 0 0 chr1 170348362 170348395 -26847037 + AT_rich Low_complexity Low_complexity 1 33 0 4 1884 235 65 43 0 chr1 170348395 170348441 -26846991 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 4 1884 185 315 65 11 chr1 170349945 170350038 -26845394 - MIRb SINE MIR -65 203 106 4 1884 21 36 0 0 chr1 170350496 170350524 -26844908 + AT_rich Low_complexity Low_complexity 1 28 0 4 1884 343 249 16 0 chr1 170350540 170350644 -26844788 + L1MB7 LINE L1 5558 5666 -512 4 1884 220 260 41 0 chr1 170350676 170350749 -26844683 + (CAG)n Simple_repeat Simple_repeat 2 77 0 4 1884 935 292 69 28 chr1 170350757 170351222 -26844210 + L1MB7 LINE L1 5701 6184 0 4 1884 181 276 52 0 chr1 170351691 170351749 -26843683 - MIR3 SINE MIR -37 171 111 4 1884 293 289 9 65 chr1 170351906 170352048 -26843384 - MIR SINE MIR -83 179 47 4 1884 606 203 14 36 chr1 170352695 170352833 -26842599 + B1_Mur1 SINE Alu 5 139 -10 4 1884 633 246 7 7 chr1 170352939 170353082 -26842350 + RSINE1 SINE B4 2 144 -21 4 1884 333 0 0 0 chr1 170354068 170354105 -26841327 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1884 405 0 0 0 chr1 170354105 170354149 -26841283 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1884 26 50 0 0 chr1 170354589 170354629 -26840803 + AT_rich Low_complexity Low_complexity 1 40 0 4 1884 496 0 31 0 chr1 170355252 170355316 -26840116 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1884 297 0 0 0 chr1 170355498 170355531 -26839901 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1884 423 50 62 12 chr1 170359114 170359195 -26836237 + (CAAAA)n Simple_repeat Simple_repeat 2 86 0 4 1884 189 0 0 0 chr1 170359518 170359539 -26835893 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1884 252 0 0 0 chr1 170360893 170360921 -26834511 + (TTA)n Simple_repeat Simple_repeat 1 28 0 4 1884 219 203 0 68 chr1 170361828 170361902 -26833530 + G-rich Low_complexity Low_complexity 2 70 0 4 1884 755 66 0 9 chr1 170362330 170362437 -26832995 + (GGA)n Simple_repeat Simple_repeat 2 107 0 4 1884 202 271 0 0 chr1 170362545 170362604 -26832828 + CT-rich Low_complexity Low_complexity 3 61 0 4 1884 595 272 105 0 chr1 170363257 170363448 -26831984 - MIRb SINE MIR -8 260 50 4 1884 630 311 77 56 chr1 170366255 170366752 -26828680 + Lx7 LINE L1 6952 7473 0 4 1884 1314 325 98 97 chr1 170367399 170368227 -26827205 - RMER15-int LTR ERVL -2769 2230 1386 4 1884 1641 31 11 0 chr1 170368227 170368418 -26827014 - B2_Mm1a SINE B2 0 193 1 4 1884 1314 325 98 97 chr1 170368418 170369640 -26825792 - RMER15-int LTR ERVL -3614 1385 174 4 1884 2192 194 17 14 chr1 170369640 170370059 -26825373 - MTC LTR MaLR -1 420 1 4 1884 1314 325 98 97 chr1 170370059 170370232 -26825200 - RMER15-int LTR ERVL -4826 173 2 4 1884 412 263 0 0 chr1 170370415 170370514 -26824918 - MTC LTR MaLR -252 169 71 4 1884 3565 88 8 16 chr1 170370643 170371148 -26824284 - L1_Mus3 LINE L1 -6 6632 6132 4 1884 295 336 7 52 chr1 170371729 170371864 -26823568 + RSINE1 SINE B4 3 131 -34 4 1884 254 307 11 74 chr1 170372069 170372164 -26823268 - MLT1H LTR MaLR -409 140 52 5 1884 900 84 32 77 chr1 170372238 170372393 -26823039 - B1_Mus1 SINE Alu 0 148 1 5 1884 1579 52 0 0 chr1 170372403 170372594 -26822838 - B2_Mm1a SINE B2 -1 192 2 5 1884 21 36 0 0 chr1 170373869 170373897 -26821535 + AT_rich Low_complexity Low_complexity 1 28 0 5 1884 658 297 17 22 chr1 170374113 170374292 -26821140 - B4A SINE B4 -4 288 111 5 1884 1095 110 85 0 chr1 170374576 170374740 -26820692 - B2_Mm2 SINE B2 -14 181 4 5 1884 845 135 109 12 chr1 170374767 170374932 -26820500 - B2_Mm2 SINE B2 -14 181 1 5 1884 730 224 0 0 chr1 170375188 170375322 -26820110 - B1_Mus2 SINE Alu -13 134 1 5 1884 257 0 0 29 chr1 170376234 170376268 -26819164 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1884 363 239 83 0 chr1 170376350 170376466 -26818966 - B1_Mur2 SINE Alu -3 146 6 5 1884 24 0 0 0 chr1 170376470 170376494 -26818938 + AT_rich Low_complexity Low_complexity 1 24 0 5 1884 557 144 0 8 chr1 170376494 170376613 -26818819 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 1884 323 299 37 9 chr1 170376613 170376721 -26818711 - B3A SINE B2 -16 182 72 5 1884 421 284 7 33 chr1 170376769 170376922 -26818510 + B1F1 SINE Alu 1 149 0 5 1884 207 61 19 58 chr1 170376922 170376974 -26818458 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 5 1884 427 334 79 35 chr1 170377281 170377392 -26818040 + L1MEg LINE L1 383 515 -5569 5 1884 1443 130 110 110 chr1 170377392 170377720 -26817712 + ORR1A4 LTR MaLR 1 328 -1 5 1884 427 334 79 35 chr1 170377720 170378089 -26817343 + L1MEg LINE L1 516 884 -5200 5 1884 897 125 22 11 chr1 170378351 170378529 -26816903 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 5 1884 674 149 79 43 chr1 170378630 170378657 -26816775 - B1_Mur3 SINE Alu 0 149 118 5 1884 522 31 0 0 chr1 170378657 170378721 -26816711 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1884 674 149 79 43 chr1 170378721 170378833 -26816599 - B1_Mur3 SINE Alu -32 117 5 5 1884 180 0 0 0 chr1 170378899 170378919 -26816513 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 5 1884 1244 38 0 0 chr1 170378919 170379079 -26816353 - B2_Mm1a SINE B2 -33 160 1 5 1884 493 237 146 26 chr1 170379335 170379539 -26815893 + B3A SINE B2 5 214 -2 5 1884 684 0 0 0 chr1 170379668 170379744 -26815688 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 5 1884 270 323 10 10 chr1 170380069 170380169 -26815263 + CT-rich Low_complexity Low_complexity 2 101 0 5 1884 315 336 128 23 chr1 170380337 170380556 -26814876 - HAL1 LINE L1 -1068 1439 1198 5 1884 267 133 0 0 chr1 170380584 170380629 -26814803 + (TAA)n Simple_repeat Simple_repeat 3 47 0 5 1884 492 258 148 6 chr1 170381438 170381621 -26813811 + MER3 DNA MER1_type 1 209 0 5 1884 282 371 11 86 chr1 170382217 170382403 -26813029 + B4A SINE B4 3 174 -118 5 1884 232 308 31 0 chr1 170382423 170382488 -26812944 + RSINE1 SINE B4 78 144 -21 5 1884 459 0 0 0 chr1 170382505 170382556 -26812876 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1884 240 259 98 28 chr1 170382583 170382726 -26812706 + MTD-int LTR MaLR 1102 1254 -4 5 1884 1157 246 73 13 chr1 170382731 170383032 -26812400 + MTD LTR MaLR 1 319 -100 5 1884 180 0 0 0 chr1 170383100 170383120 -26812312 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1884 934 103 41 0 chr1 170383120 170383266 -26812166 - B2_Mm2 SINE B2 -42 153 2 5 1884 34 0 0 0 chr1 170383275 170383309 -26812123 + AT_rich Low_complexity Low_complexity 1 34 0 5 1884 206 62 0 30 chr1 170383376 170383409 -26812023 + (TAA)n Simple_repeat Simple_repeat 1 32 0 5 1884 698 218 14 7 chr1 170383450 170383593 -26811839 - B1_Mur3 SINE Alu -5 144 1 5 1884 772 168 0 0 chr1 170383706 170383837 -26811595 - B1_Mus2 SINE Alu -7 140 10 5 1884 267 313 143 55 chr1 170383842 170384150 -26811282 - L1M5 LINE L1 -380 5793 5459 5 1884 542 210 46 15 chr1 170384769 170384936 -26810496 + L1MA4 LINE L1 5754 5966 -190 5 1884 319 292 101 42 chr1 170385192 170385360 -26810072 - MER20 DNA MER1_type -1 218 41 5 1884 289 309 150 8 chr1 170386304 170386431 -26809001 + RSINE1 SINE B4 2 146 -19 5 1884 469 0 33 0 chr1 170386543 170386604 -26808828 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1884 672 273 13 44 chr1 170386659 170386885 -26808547 - B4A SINE B4 -72 220 2 5 1884 1509 23 0 0 chr1 170387955 170388132 -26807300 + (TTCTC)n Simple_repeat Simple_repeat 3 179 0 5 1884 1092 16 0 0 chr1 170388132 170388258 -26807174 + (TCCCC)n Simple_repeat Simple_repeat 2 127 0 5 1884 239 227 0 0 chr1 170388267 170388311 -26807121 + polypyrimidine Low_complexity Low_complexity 3 46 0 5 1884 397 357 0 30 chr1 170388355 170388488 -26806944 - B1F SINE Alu -9 140 12 5 1884 306 0 0 0 chr1 170388894 170388928 -26806504 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1884 211 219 0 0 chr1 170389388 170389429 -26806003 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 5 1884 689 42 21 0 chr1 170389429 170389525 -26805907 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 5 1884 710 208 21 0 chr1 170389650 170389794 -26805638 - B1_Mur1 SINE Alu -2 147 1 5 1884 236 331 81 25 chr1 170390006 170390167 -26805265 - L2c LINE L2 -210 3177 3008 5 1884 885 161 0 0 chr1 170390316 170390453 -26804979 + B1_Mur1 SINE Alu 3 139 -10 5 1884 240 143 0 0 chr1 170390467 170390523 -26804909 + (CAAAAA)n Simple_repeat Simple_repeat 1 56 0 5 1884 639 0 0 0 chr1 170390991 170391062 -26804370 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1884 194 385 59 0 chr1 170391449 170391636 -26803796 - L2c LINE L2 -1334 2085 1888 5 1884 554 248 6 0 chr1 170392411 170392568 -26802864 + G-rich Low_complexity Low_complexity 3 160 0 5 1884 221 309 20 40 chr1 170393488 170393589 -26801843 + MIRb SINE MIR 58 156 -112 5 1885 965 210 75 0 chr1 170393979 170394179 -26801253 + B3 SINE B2 1 215 -1 5 1885 24 0 0 0 chr1 170396023 170396047 -26799385 + AT_rich Low_complexity Low_complexity 1 24 0 5 1885 7644 38 1 3 chr1 170396062 170396968 -26798464 - L1Md_F2 LINE L1 0 6582 5679 5 1885 278 279 0 12 chr1 170397017 170397097 -26798335 - ID2 SINE ID 0 83 5 5 1885 973 286 96 62 chr1 170397180 170397628 -26797804 + MER21B LTR ERV1 330 792 -71 5 1885 936 108 0 0 chr1 170397688 170397827 -26797605 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 5 1885 207 0 0 0 chr1 170398133 170398156 -26797276 + (CAA)n Simple_repeat Simple_repeat 1 23 0 5 1885 394 267 10 10 chr1 170398187 170398289 -26797143 - PB1D10 SINE Alu -15 102 1 5 1885 813 246 54 5 chr1 170398325 170398529 -26796903 + B3 SINE B2 1 214 -2 5 1885 615 117 0 0 chr1 170398530 170398624 -26796808 + (GAA)n Simple_repeat Simple_repeat 3 96 0 5 1885 3176 157 9 36 chr1 170399329 170399909 -26795523 + RLTR12A LTR ERVK 1 564 -4 5 1885 640 217 77 44 chr1 170400209 170400392 -26795040 - B2_Mm2 SINE B2 -6 189 1 5 1885 256 252 94 28 chr1 170400736 170400842 -26794590 + PB1D10 SINE Alu 1 113 -4 5 1885 585 294 31 36 chr1 170401185 170401227 -26794205 + B3A SINE B2 2 39 -159 5 1885 3292 31 13 10 chr1 170401227 170401622 -26793810 + MTA_Mm LTR MaLR 1 396 0 5 1885 585 294 31 36 chr1 170401622 170401773 -26793659 + B3A SINE B2 40 194 -4 5 1885 846 147 7 7 chr1 170401805 170401949 -26793483 - B1_Mur3 SINE Alu 0 149 6 5 1885 1640 206 117 12 chr1 170402030 170402457 -26792975 + Lx9 LINE L1 7173 7644 0 5 1885 552 106 0 0 chr1 170403703 170403788 -26791644 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1885 551 311 55 33 chr1 170404648 170404921 -26790511 + B4A SINE B4 4 282 -10 5 1885 548 337 119 51 chr1 170405067 170405520 -26789912 + MLT1D LTR MaLR 22 505 0 5 1885 216 0 0 0 chr1 170405641 170405665 -26789767 + (CCCG)n Simple_repeat Simple_repeat 1 24 0 5 1885 468 0 0 0 chr1 170407779 170407831 -26787601 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1885 480 231 193 12 chr1 170407831 170408002 -26787430 + B4 SINE B4 22 223 -69 5 1885 245 29 0 29 chr1 170408019 170408054 -26787378 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1885 711 221 7 14 chr1 170408056 170408198 -26787234 + B1_Mur4 SINE Alu 1 141 -9 5 1885 213 94 0 0 chr1 170408199 170408231 -26787201 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1885 849 175 0 0 chr1 170408448 170408591 -26786841 - B1_Mur4 SINE Alu -7 143 1 5 1885 440 281 80 38 chr1 170409026 170409263 -26786169 - ORR1E LTR MaLR -111 248 2 5 1885 191 230 16 47 chr1 170409884 170409948 -26785484 - L2a LINE L2 -1 3425 3364 5 1885 1964 142 88 16 chr1 170411498 170411883 -26783549 - MTC LTR MaLR -8 413 1 5 1885 458 239 53 0 chr1 170411884 170411997 -26783435 - MTEa LTR MaLR -9 370 252 5 1885 1011 103 46 6 chr1 170412129 170412304 -26783128 - RLTR11A LTR ERVK 0 528 347 5 1885 1259 126 42 61 chr1 170412304 170412566 -26782866 + RLTR11A LTR ERVK 79 335 -193 5 1885 1179 290 35 21 chr1 170412603 170413029 -26782403 + ERVL-int LTR ERVL 780 1211 -4546 5 1885 195 129 0 0 chr1 170413051 170413082 -26782350 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1885 329 273 18 26 chr1 170413151 170413264 -26782168 - MLT1A0 LTR MaLR -243 122 11 5 1885 243 0 0 0 chr1 170413522 170413549 -26781883 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1885 216 0 0 0 chr1 170414149 170414173 -26781259 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 5 1885 185 345 11 67 chr1 170414177 170414267 -26781165 - L2c LINE L2 -10 3377 3293 5 1885 188 321 0 13 chr1 170415317 170415396 -26780036 + MIR SINE MIR 138 215 -47 5 1885 764 191 13 20 chr1 170415866 170415945 -26779487 + B1_Mur4 SINE Alu 1 79 -71 5 1885 2938 58 71 5 chr1 170415945 170416340 -26779092 + BGLII LTR ERVK 1 421 0 5 1885 764 191 13 20 chr1 170416340 170416410 -26779022 + B1_Mur4 SINE Alu 80 149 -1 5 1885 468 286 114 5 chr1 170416942 170417229 -26778203 - MLT1D LTR MaLR -12 668 339 6 1885 329 138 31 0 chr1 170418551 170418616 -26776816 + (TATG)n Simple_repeat Simple_repeat 2 68 0 6 1885 1195 313 8 3 chr1 170418619 170418975 -26776457 - Lx8 LINE L1 -525 6948 6591 6 1885 288 53 0 0 chr1 170419614 170419652 -26775780 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1885 283 159 0 0 chr1 170422418 170422462 -26772970 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 6 1885 762 136 6 33 chr1 170422462 170422645 -26772787 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1885 412 259 67 20 chr1 170422777 170422927 -26772505 - RMER15 LTR ERVL -15 560 404 6 1885 944 189 27 145 chr1 170423185 170423550 -26771882 + RLTRETN_Mm LTR ERVK 1 322 0 6 1885 2984 58 0 11 chr1 170423876 170424256 -26771176 - L1Md_F2 LINE L1 -6 6576 6201 6 1885 574 317 61 29 chr1 170425245 170425557 -26769875 + MER2 DNA MER2_type 3 324 -21 6 1885 198 358 48 8 chr1 170426991 170427115 -26768317 - MIR3 SINE MIR -66 142 14 6 1885 581 65 56 8 chr1 170427561 170427686 -26767746 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 6 1885 180 111 0 0 chr1 170427860 170427887 -26767545 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1885 3907 297 71 28 chr1 170427967 170429441 -26765991 - Lx8 LINE L1 -189 7284 5747 6 1885 537 100 0 0 chr1 170429441 170429531 -26765901 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1885 3907 262 168 30 chr1 170429531 170429779 -26765653 - Lx8 LINE L1 -414 5764 5458 6 1885 2096 97 41 33 chr1 170430150 170430512 -26764920 + Lx LINE L1 6287 6651 -3 6 1885 302 327 0 9 chr1 170430561 170430666 -26764766 + Cheshire DNA MER1_type 175 278 -2142 6 1885 560 175 10 0 chr1 170430885 170430988 -26764444 + B1_Mur2 SINE Alu 26 129 -20 6 1885 221 0 35 0 chr1 170430988 170431017 -26764415 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1885 438 165 0 0 chr1 170431017 170431096 -26764336 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1885 215 158 26 0 chr1 170431104 170431142 -26764290 + (CATA)n Simple_repeat Simple_repeat 1 39 0 6 1885 225 0 0 0 chr1 170431216 170431241 -26764191 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1885 336 262 12 0 chr1 170431586 170431670 -26763762 - BC1_Mm scRNA scRNA -66 86 2 6 1885 692 54 11 0 chr1 170431804 170431897 -26763535 + (TC)n Simple_repeat Simple_repeat 2 95 0 6 1885 259 240 107 0 chr1 170431930 170432005 -26763427 - Lx5 LINE L1 -3 7047 6965 6 1885 24 0 0 0 chr1 170432007 170432031 -26763401 + AT_rich Low_complexity Low_complexity 1 24 0 6 1885 1104 68 0 0 chr1 170432192 170432338 -26763094 + (TC)n Simple_repeat Simple_repeat 1 146 0 6 1885 441 0 0 0 chr1 170433143 170433192 -26762240 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1885 184 54 53 26 chr1 170433865 170433903 -26761529 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1885 23 0 0 0 chr1 170434088 170434111 -26761321 + AT_rich Low_complexity Low_complexity 1 23 0 6 1885 277 284 0 69 chr1 170434179 170434266 -26761166 - B4A SINE B4 0 292 212 6 1885 495 250 137 5 chr1 170434275 170434480 -26760952 - Lx9 LINE L1 -25 7619 7388 6 1885 617 260 45 93 chr1 170434486 170434732 -26760700 - B4A SINE B4 -58 234 1 6 1885 209 200 0 0 chr1 170434841 170434881 -26760551 + T-rich Low_complexity Low_complexity 1 40 0 6 1885 293 333 11 49 chr1 170435892 170436075 -26759357 + (CACCAT)n Simple_repeat Simple_repeat 5 180 0 6 1885 486 316 17 17 chr1 170436121 170436298 -26759134 + (CACCAT)n Simple_repeat Simple_repeat 4 180 0 6 1885 369 239 9 35 chr1 170437030 170437143 -26758289 + MER53 DNA hAT 1 110 -83 6 1885 707 135 19 84 chr1 170437309 170437463 -26757969 + URR1A DNA MER1_type 83 226 0 6 1885 181 323 15 30 chr1 170437905 170437972 -26757460 - MIRb SINE MIR -122 146 81 6 1885 260 265 23 35 chr1 170438538 170438624 -26756808 - PB1D10 SINE Alu 0 117 33 6 1885 291 28 0 0 chr1 170438958 170438994 -26756438 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 6 1885 21 0 0 0 chr1 170439192 170439213 -26756219 + AT_rich Low_complexity Low_complexity 1 21 0 6 1885 491 311 104 14 chr1 170440160 170440372 -26755060 + LTR16B1 LTR ERVL 1 231 -249 6 1885 280 333 0 0 chr1 170440453 170440543 -26754889 + LTR16B1 LTR ERVL 380 469 -11 6 1885 1148 142 62 24 chr1 170440580 170440790 -26754642 + URR1B DNA MER1_type 2 219 -6 6 1885 693 167 127 0 chr1 170441564 170441690 -26753742 - B1_Mur4 SINE Alu -5 145 4 6 1885 1046 285 55 41 chr1 170441927 170442027 -26753405 - MTEb LTR MaLR -1 378 283 6 1885 4861 112 45 8 chr1 170442027 170442738 -26752694 - RMER19A LTR ERVK 0 737 1 6 1885 1046 285 55 41 chr1 170442738 170443003 -26752429 - MTEb LTR MaLR -97 282 8 6 1885 322 325 42 8 chr1 170443212 170443330 -26752102 + HERV16-int LTR ERVL 1453 1574 -3422 6 1885 509 192 0 29 chr1 170443417 170443519 -26751913 + B3A SINE B2 2 100 -98 6 1885 1991 48 8 0 chr1 170443512 170443761 -26751671 + MTA_Mm LTR MaLR 146 396 0 6 1885 1255 287 93 14 chr1 170443957 170444798 -26750634 - L1M4b LINE L1 -2325 4681 3775 6 1885 381 238 163 9 chr1 170444926 170445277 -26750155 - L1M4b LINE L1 -3707 3627 2973 6 1885 284 83 21 0 chr1 170445307 170445355 -26750077 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1885 484 327 58 22 chr1 170445355 170445633 -26749799 - L1M4b LINE L1 -4463 2871 2584 6 1885 364 118 29 0 chr1 170445633 170445701 -26749731 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 6 1885 1299 215 84 49 chr1 170445744 170446091 -26749341 - ORR1C2 LTR MaLR 0 384 26 6 1885 325 186 2 0 chr1 170446237 170446302 -26749130 - ORR1C2-int LTR MaLR -1187 393 305 6 1885 346 355 84 65 chr1 170446313 170446623 -26748809 + MLT1J LTR MaLR 45 360 -152 6 1885 326 284 159 55 chr1 170447204 170447405 -26748027 - MIRb SINE MIR -45 223 2 6 1885 349 129 29 0 chr1 170447879 170447949 -26747483 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1885 210 311 30 105 chr1 170449544 170449677 -26745755 + MIRb SINE MIR 88 210 -58 6 1885 351 0 0 0 chr1 170449862 170449901 -26745531 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1885 497 246 90 0 chr1 170449901 170450023 -26745409 - B1_Mur1 SINE Alu -16 133 1 6 1885 438 254 107 0 chr1 170450069 170450191 -26745241 - B1F SINE Alu -9 140 6 6 1885 288 0 0 0 chr1 170450699 170450731 -26744701 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 6 1885 586 122 10 0 chr1 170450731 170450829 -26744603 + Lx3A LINE L1 6879 6977 -4 6 1885 22 56 0 0 chr1 170450832 170450868 -26744564 + AT_rich Low_complexity Low_complexity 1 36 0 6 1885 22 70 0 0 chr1 170451007 170451050 -26744382 + AT_rich Low_complexity Low_complexity 1 43 0 6 1885 459 82 0 0 chr1 170451057 170451130 -26744302 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1885 612 0 0 0 chr1 170451885 170451953 -26743479 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1885 356 273 20 0 chr1 170451989 170452088 -26743344 + ORR1E LTR MaLR 259 359 0 6 1885 423 329 48 77 chr1 170452552 170452928 -26742504 + L1ME1 LINE L1 5812 6176 -3 6 1885 7615 151 22 27 chr1 170453423 170455022 -26740410 - Lx5 LINE L1 -7 7043 5430 6 1885 3188 115 2 0 chr1 170455038 170455541 -26739891 + L1_Mur2 LINE L1 3245 3748 -2129 6 1885 204 340 108 45 chr1 170456045 170456156 -26739276 - L2b LINE L2 -12 3363 3246 6 1885 477 0 0 0 chr1 170456157 170456210 -26739222 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1885 253 261 30 30 chr1 170456338 170456405 -26739027 + MIRb SINE MIR 1 67 -201 6 1885 437 350 8 0 chr1 170457590 170457707 -26737725 + B3A SINE B2 1 118 -80 6 1885 549 0 0 0 chr1 170457782 170457843 -26737589 + (CTAA)n Simple_repeat Simple_repeat 2 62 0 6 1885 225 0 0 0 chr1 170457844 170457869 -26737563 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 1885 963 232 0 44 chr1 170458003 170458228 -26737204 - B3 SINE B2 -1 215 1 6 1885 25 51 0 0 chr1 170458239 170458278 -26737154 + AT_rich Low_complexity Low_complexity 1 39 0 6 1885 301 381 67 59 chr1 170458278 170458635 -26736797 + HAL1 LINE L1 104 463 -2044 6 1885 294 29 0 0 chr1 170459622 170459657 -26735775 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1885 1242 296 80 3 chr1 170459839 170460191 -26735241 - MTE2b LTR MaLR 0 379 1 6 1885 22 0 0 0 chr1 170460552 170460574 -26734858 + AT_rich Low_complexity Low_complexity 1 22 0 6 1885 1206 314 75 57 chr1 170460595 170461284 -26734148 + Kanga2_a DNA Tc2 46 747 -141 6 1885 609 307 35 41 chr1 170461424 170461740 -26733692 - CR1_Mam LINE CR1 -269 1935 1622 6 1885 204 263 133 31 chr1 170462815 170462913 -26732519 - MIR3 SINE MIR -31 177 70 6 1885 574 331 65 4 chr1 170463339 170463585 -26731847 - Lx8 LINE L1 -244 7229 6969 6 1885 943 268 30 73 chr1 170464219 170464589 -26730843 + ORR1E LTR MaLR 2 355 -4 6 1885 396 321 120 45 chr1 170464860 170465150 -26730282 + MLT1G3 LTR MaLR 1 310 -269 6 1885 264 340 151 20 chr1 170465631 170465883 -26729549 + L2a LINE L2 2782 3066 -353 6 1885 226 327 43 17 chr1 170467258 170467373 -26728059 + L2a LINE L2 3270 3387 -39 6 1885 26 30 0 0 chr1 170468489 170468522 -26726910 + AT_rich Low_complexity Low_complexity 1 33 0 6 1885 210 200 20 0 chr1 170468522 170468572 -26726860 + (TATG)n Simple_repeat Simple_repeat 1 51 0 6 1885 495 270 23 52 chr1 170468580 170468752 -26726680 - B4A SINE B4 0 292 126 6 1885 871 220 35 0 chr1 170468810 170468983 -26726449 - B3 SINE B2 -37 179 1 6 1885 279 329 0 12 chr1 170468995 170469081 -26726351 - B4A SINE B4 -207 85 1 6 1885 431 196 0 18 chr1 170470321 170470435 -26724997 + CT-rich Low_complexity Low_complexity 2 113 0 6 1885 312 325 8 0 chr1 170470598 170470724 -26724708 + Charlie13b DNA Charlie 217 343 -169 6 1885 788 274 92 34 chr1 170471640 170471878 -26723554 + B4A SINE B4 3 254 -38 6 1885 340 67 16 16 chr1 170471891 170471952 -26723480 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1885 1436 263 50 45 chr1 170472145 170472588 -26722844 + RLTR20A2 LTR ERVK 38 489 -89 6 1885 729 43 0 0 chr1 170472588 170472681 -26722751 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1885 1436 263 50 45 chr1 170472681 170472775 -26722657 + RLTR20A2 LTR ERVK 490 578 0 6 1885 197 33 33 0 chr1 170472915 170472945 -26722487 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 1885 718 328 147 36 chr1 170474344 170474813 -26720619 - LTR33C LTR ERVL -89 540 20 6 1885 725 303 88 7 chr1 170475169 170475634 -26719798 + L1M5 LINE L1 5296 5798 -366 7 1885 1726 303 43 13 chr1 170475634 170476150 -26719282 + MTE-int LTR MaLR 996 1527 -53 7 1885 369 329 44 32 chr1 170476150 170476335 -26719097 + ORR1D2 LTR MaLR 1 186 -173 7 1885 798 311 96 53 chr1 170476395 170476943 -26718489 - MTEa-int LTR MaLR -593 987 307 7 1885 410 347 47 20 chr1 170476961 170477111 -26718321 - RSINE1 SINE B4 -2 163 10 7 1885 525 200 142 30 chr1 170477160 170477294 -26718138 - B1_Mur3 SINE Alu 0 149 1 7 1885 509 279 51 7 chr1 170477303 170477440 -26717992 - B1_Mur1 SINE Alu -4 145 3 7 1885 1005 340 6 14 chr1 170477445 170477800 -26717632 - MTEa-int LTR MaLR -1228 352 1 7 1885 364 324 17 61 chr1 170477802 170477983 -26717449 - MTEa LTR MaLR -2 377 205 7 1885 7524 67 0 5 chr1 170478372 170479667 -26715765 - L1_Mus1 LINE L1 0 6654 5282 7 1885 392 260 162 0 chr1 170480308 170480462 -26714970 - MamRep434 DNA TcMar -153 273 95 7 1885 283 333 0 0 chr1 170480695 170480773 -26714659 + L2b LINE L2 3289 3366 -9 7 1885 602 109 10 0 chr1 170481437 170481538 -26713894 + (TC)n Simple_repeat Simple_repeat 2 103 0 7 1885 187 300 0 0 chr1 170482310 170482360 -26713072 - MIRm SINE MIR -8 268 219 7 1885 581 306 74 68 chr1 170482792 170483143 -26712289 + ORR1E LTR MaLR 1 353 -6 7 1885 195 138 26 68 chr1 170483275 170483392 -26712040 + (TTATA)n Simple_repeat Simple_repeat 5 116 0 7 1885 263 188 39 73 chr1 170483471 170483649 -26711783 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 7 1885 396 0 0 0 chr1 170483691 170483735 -26711697 + (TTA)n Simple_repeat Simple_repeat 3 46 0 7 1885 863 280 20 20 chr1 170484225 170484422 -26711010 + B3A SINE B2 2 198 0 7 1885 777 327 70 15 chr1 170484487 170484816 -26710616 - MTD LTR MaLR 0 365 19 7 1885 1762 328 100 58 chr1 170484841 170486179 -26709253 - MTD-int LTR MaLR -16 1355 6 7 1885 1266 283 77 25 chr1 170486206 170486771 -26708661 - MTD LTR MaLR 0 419 1 7 1885 474 311 16 53 chr1 170486780 170486967 -26708465 - B3A SINE B2 -16 182 3 7 1885 1031 305 147 25 chr1 170487280 170487966 -26707466 + L1M4c LINE L1 20 789 -5595 7 1885 475 271 31 0 chr1 170487979 170488108 -26707324 - B1F SINE Alu 0 149 17 7 1885 2573 140 12 92 chr1 170488170 170488263 -26707169 - RMER4A LTR ERVK -4 462 381 7 1885 7774 49 10 0 chr1 170488263 170489221 -26706211 + L1Md_F2 LINE L1 5615 6582 0 7 1885 2573 140 12 92 chr1 170489221 170489629 -26705803 - RMER4A LTR ERVK -86 380 1 7 1885 4095 46 0 0 chr1 170489679 170490176 -26705256 - L1Md_F3 LINE L1 0 6584 6088 7 1885 1506 32 0 0 chr1 170490178 170490364 -26705068 + L1Md_F3 LINE L1 5913 6098 -486 7 1885 515 257 90 34 chr1 170491071 170491104 -26704328 + L1M4c LINE L1 833 862 -5522 7 1885 1272 195 68 119 chr1 170491104 170491170 -26704262 - ORR1C1 LTR MaLR -2 376 310 7 1885 1047 76 20 14 chr1 170491170 170491316 -26704116 + B1_Mus1 SINE Alu 2 148 0 7 1885 1272 195 68 119 chr1 170491316 170491645 -26703787 - ORR1C1 LTR MaLR -69 309 1 7 1885 515 257 90 34 chr1 170491645 170491966 -26703466 + L1M4c LINE L1 863 1207 -5177 7 1885 332 318 73 96 chr1 170492044 170492305 -26703127 - ORR1E LTR MaLR -47 312 58 7 1885 2703 58 13 11 chr1 170492308 170492681 -26702751 - ORR1A1 LTR MaLR 0 374 1 7 1885 396 0 0 0 chr1 170492713 170492757 -26702675 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1885 455 264 67 0 chr1 170492760 170492938 -26702494 + L1M4c LINE L1 1299 1488 -4896 7 1885 247 272 27 64 chr1 170493156 170493266 -26702166 + BC1_Mm scRNA scRNA 16 121 -31 7 1885 784 292 100 19 chr1 170493514 170494304 -26701128 + L1M4c LINE L1 1908 2753 -3623 7 1885 469 295 117 74 chr1 170494628 170494981 -26700451 + L1M4c LINE L1 3367 3735 -2641 7 1885 5862 45 3 0 chr1 170494981 170495696 -26699736 + L1Md_F2 LINE L1 5853 6569 -13 7 1885 469 295 117 74 chr1 170495696 170496110 -26699322 + L1M4c LINE L1 3736 4167 -2209 7 1885 919 173 17 23 chr1 170496115 170496287 -26699145 + B2_Mm2 SINE B2 1 171 -24 7 1885 764 21 10 0 chr1 170496341 170496355 -26699077 + (GAA)n Simple_repeat Simple_repeat 1 15 0 7 1885 1116 91 0 17 chr1 170496355 170496534 -26698898 + (GGA)n Simple_repeat Simple_repeat 3 178 0 7 1885 1578 14 3 0 chr1 170496534 170496797 -26698635 + (GAA)n Simple_repeat Simple_repeat 1 263 0 7 1885 1468 219 129 21 chr1 170496797 170496960 -26698472 + MTD LTR MaLR 52 223 -196 7 1885 3030 60 57 51 chr1 170496960 170497432 -26698000 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1885 1468 219 129 21 chr1 170497432 170497600 -26697832 + MTD LTR MaLR 224 419 0 7 1885 252 0 0 0 chr1 170497721 170497749 -26697683 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1885 899 231 39 0 chr1 170498127 170498330 -26697102 - B3 SINE B2 -4 212 2 7 1885 596 305 62 77 chr1 170498934 170499419 -26696013 - L1MB7 LINE L1 -11 6173 5682 7 1885 225 0 0 0 chr1 170499419 170499444 -26695988 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1885 596 305 62 77 chr1 170499444 170499583 -26695849 - L1MB7 LINE L1 -503 5681 5560 7 1885 490 321 29 87 chr1 170499663 170499973 -26695459 - B4A SINE B4 0 292 1 7 1885 871 261 37 10 chr1 170500010 170500413 -26695019 - L1M4 LINE L1 -654 5520 5103 1 1885 624 285 97 45 chr1 170500690 170500958 -26694474 + B4A SINE B4 3 284 -8 2 1885 1239 109 40 6 chr1 170501033 170501208 -26694224 + B2_Mm2 SINE B2 1 181 -14 3 1885 2904 177 35 46 chr1 170501299 170501904 -26693528 - RMER20B LTR ERVK -25 602 5 4 1885 259 255 53 1 chr1 170502601 170502685 -26692747 + MTE2b LTR MaLR 81 167 -212 5 1885 245 273 28 92 chr1 170502646 170502755 -26692677 - PB1D7 SINE Alu -18 102 1 6 1885 646 328 67 41 chr1 170502767 170503037 -26692395 - MLT1A0 LTR MaLR -2 363 87 7 1885 903 67 0 0 chr1 170503099 170503218 -26692214 + (TC)n Simple_repeat Simple_repeat 2 120 0 8 1885 1197 103 0 0 chr1 170503218 170503393 -26692039 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 9 1885 338 359 102 24 chr1 170503462 170503922 -26691510 - L1M4 LINE L1 -3132 3014 2519 1 1885 180 152 0 0 chr1 170504059 170504092 -26691340 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1885 2876 272 69 59 chr1 170504168 170504611 -26690821 - Lx8 LINE L1 0 7473 7019 1 1885 1716 101 8 25 chr1 170504611 170504856 -26690576 - L1_Mus3 LINE L1 -9 6629 6389 1 1885 2876 272 69 59 chr1 170504856 170505418 -26690014 - Lx8 LINE L1 -455 7018 6458 1 1885 716 291 44 25 chr1 170505446 170505482 -26689950 - B3 SINE B2 -6 210 175 1 1885 405 0 0 0 chr1 170505482 170505527 -26689905 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1885 716 291 44 25 chr1 170505527 170505694 -26689738 - B3 SINE B2 -42 174 5 1 1885 244 321 44 15 chr1 170505710 170505846 -26689586 - L1MD LINE L1 -3614 2532 2393 1 1885 851 314 91 67 chr1 170505950 170506589 -26688843 - L1MB7 LINE L1 -1 6183 5530 1 1885 1576 291 143 52 chr1 170506672 170508067 -26687365 - L1MB7 LINE L1 -743 5403 3883 1 1885 812 174 15 0 chr1 170508411 170508543 -26686889 + B1_Mur3 SINE Alu 9 142 -7 1 1885 403 311 120 40 chr1 170508569 170508944 -26686488 - L1MB7 LINE L1 -2456 3690 3286 1 1885 194 62 0 30 chr1 170509019 170509052 -26686380 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 1 1885 369 0 0 0 chr1 170510471 170510512 -26684920 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1885 1380 0 0 32 chr1 170510515 170510701 -26684731 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1885 438 20 0 0 chr1 170510704 170510755 -26684677 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1885 23 33 0 0 chr1 170511716 170511746 -26683686 + AT_rich Low_complexity Low_complexity 1 30 0 2 1885 420 71 0 0 chr1 170513207 170513263 -26682169 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1885 21 0 0 0 chr1 170513488 170513509 -26681923 + AT_rich Low_complexity Low_complexity 1 21 0 2 1885 230 330 75 9 chr1 170513841 170513948 -26681484 + B4A SINE B4 102 215 -77 2 1885 540 0 0 0 chr1 170514045 170514105 -26681327 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1885 182 255 19 56 chr1 170514146 170514200 -26681232 + MIR3 SINE MIR 139 190 -18 2 1885 414 0 0 0 chr1 170514723 170514769 -26680663 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1885 262 346 115 28 chr1 170515013 170515334 -26680098 + L2 LINE L2 1211 1559 -1860 2 1885 25 0 0 0 chr1 170515432 170515457 -26679975 + AT_rich Low_complexity Low_complexity 1 25 0 3 1885 1735 185 38 57 chr1 170515488 170515855 -26679577 + ORR1B2 LTR MaLR 1 360 -7 3 1885 280 276 0 0 chr1 170515869 170515927 -26679505 - ID_B1 SINE B4 -53 171 114 3 1885 1080 311 49 8 chr1 170515927 170516316 -26679116 - Lx8 LINE L1 -255 7218 6814 3 1885 242 220 51 0 chr1 170516608 170516667 -26678765 + L2 LINE L2 2396 2457 -962 2 1885 375 231 0 0 chr1 170516717 170516851 -26678581 + (TG)n Simple_repeat Simple_repeat 1 134 0 3 1885 627 288 13 0 chr1 170516854 170517007 -26678425 - B3A SINE B2 -15 183 29 3 1885 243 271 110 40 chr1 170517159 170517182 -26678250 + B1F SINE Alu 42 144 -1 3 1885 274 260 96 0 chr1 170517182 170517255 -26678177 + ID_B1 SINE B4 141 220 -4 3 1885 852 158 0 0 chr1 170517261 170517413 -26678019 + (CAG)n Simple_repeat Simple_repeat 1 152 0 3 1885 1787 152 7 0 chr1 170518013 170518302 -26677130 + L1_Mus1 LINE L1 217 507 -6131 3 1885 32934 92 7 2 chr1 170518298 170524192 -26671240 + L1_Mus1 LINE L1 639 6565 -2 3 1886 345 305 101 22 chr1 170525249 170525729 -26669703 - L1M5 LINE L1 -985 5374 4860 4 1886 1103 112 6 0 chr1 170525893 170526072 -26669360 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1886 207 0 0 0 chr1 170526565 170526588 -26668844 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1886 1678 27 27 0 chr1 170526688 170526876 -26668556 + B2_Mm1t SINE B2 1 193 0 4 1886 1345 20 0 0 chr1 170526957 170527109 -26668323 - L1Md_A LINE L1 0 6582 6431 4 1886 251 250 71 0 chr1 170527338 170527394 -26668038 + PB1D10 SINE Alu 1 60 -57 4 1886 275 104 21 0 chr1 170527443 170527491 -26667941 + (GGA)n Simple_repeat Simple_repeat 3 51 0 4 1886 537 158 29 5 chr1 170528890 170529107 -26666325 + (TCTCTG)n Simple_repeat Simple_repeat 1 222 0 4 1886 210 108 54 0 chr1 170529111 170529148 -26666284 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 1886 339 222 14 0 chr1 170529151 170529223 -26666209 - HAL1-3A_ME LINE L1 -809 2049 1977 4 1886 785 266 60 93 chr1 170529243 170529545 -26665887 - B4A SINE B4 0 292 1 5 1886 239 436 49 14 chr1 170530035 170530177 -26665255 + LTR16E2 LTR ERVL 80 226 -342 5 1886 291 308 41 24 chr1 170530317 170530440 -26664992 + LTR16E2 LTR ERVL 439 563 -5 5 1886 279 54 0 0 chr1 170531101 170531138 -26664294 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1886 2608 116 186 14 chr1 170531179 170531694 -26663738 + RLTR6_Mm LTR ERV1 1 604 -50 5 1886 21 0 0 0 chr1 170531810 170531831 -26663601 + AT_rich Low_complexity Low_complexity 1 21 0 5 1886 474 18 0 0 chr1 170532091 170532146 -26663286 + (TATG)n Simple_repeat Simple_repeat 2 56 0 5 1886 1236 55 18 0 chr1 170532355 170532629 -26662803 + (CA)n Simple_repeat Simple_repeat 1 278 0 5 1886 363 316 53 12 chr1 170532776 170532946 -26662486 + MER33 DNA MER1_type 36 212 -112 5 1886 624 330 22 29 chr1 170533025 170533303 -26662129 - B4A SINE B4 -14 278 3 5 1886 3829 70 12 62 chr1 170533733 170534252 -26661180 + MT2_Mm LTR ERVL 1 493 0 6 1886 5804 186 32 24 chr1 170534577 170535875 -26659557 - Lx4B LINE L1 -19 6981 5673 6 1886 7682 165 20 122 chr1 170535873 170536014 -26659418 - Lx4B LINE L1 -458 5428 5292 6 1886 2734 22 22 0 chr1 170536014 170536329 -26659103 + L1Md_F3 LINE L1 6247 6568 -16 6 1886 7682 165 20 122 chr1 170536329 170536424 -26659008 - Lx4B LINE L1 -595 5291 5259 6 1886 1187 81 0 0 chr1 170536424 170536572 -26658860 - B1_Mus1 SINE Alu 0 148 1 6 1886 7682 165 20 122 chr1 170536572 170538208 -26657224 - Lx4B LINE L1 -628 5258 3747 6 1886 10267 86 3 3 chr1 170538227 170540255 -26655177 - L1Md_F2 LINE L1 -19 6563 4535 6 1886 9914 47 2 0 chr1 170540245 170541592 -26653840 - L1Md_A LINE L1 -3445 2438 1099 6 1886 241 77 38 19 chr1 170541593 170541646 -26653786 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1886 39152 45 9 0 chr1 170541769 170548015 -26647417 - L1Md_T LINE L1 0 6582 281 6 1886 3906 166 12 6 chr1 170548016 170548742 -26646690 - L1Md_A LINE L1 -5580 1144 414 6 1886 7054 69 7 7 chr1 170548737 170549949 -26645483 - L1Md_F LINE L1 -4289 1594 371 6 1886 486 115 13 13 chr1 170549949 170550028 -26645404 - L1Md_F LINE L1 -6151 368 290 7 1886 12611 174 14 16 chr1 170550032 170550304 -26645128 - L1VL4 LINE L1 -2128 3749 3485 7 1886 666 0 0 0 chr1 170550304 170550378 -26645054 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 1886 12611 181 14 16 chr1 170550378 170552971 -26642461 - L1VL4 LINE L1 -2393 3484 888 7 1886 567 0 0 0 chr1 170553156 170553219 -26642213 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1886 28822 52 12 4 chr1 170553346 170559971 -26635461 - L1Md_T LINE L1 0 6582 99 7 1886 595 228 96 37 chr1 170560005 170560192 -26635240 - B3 SINE B2 -18 198 1 7 1886 275 226 29 21 chr1 170560229 170560369 -26635063 - L1M2a LINE L1 -4035 3133 2993 7 1886 440 264 56 9 chr1 170560764 170560978 -26634454 - L1M2a LINE L1 -4276 2892 2669 7 1886 239 299 76 21 chr1 170561021 170561319 -26634113 - L1M2a LINE L1 -4597 2571 2232 7 1886 240 94 0 0 chr1 170561320 170561352 -26634080 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1886 380 171 12 0 chr1 170561352 170561434 -26633998 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1886 466 307 35 56 chr1 170561440 170561816 -26633616 - L1M2a LINE L1 -4967 2201 1834 7 1886 232 353 69 56 chr1 170562744 170562810 -26632622 - ID_B1 SINE B4 -78 146 1 7 1886 280 308 51 0 chr1 170562810 170562888 -26632544 - ID4_ SINE ID -1 82 1 8 1886 309 260 129 8 chr1 170562901 170563025 -26632407 - B1F2 SINE Alu -8 141 3 8 1886 230 302 174 94 chr1 170563162 170563374 -26632058 - LTR88c LTR Genie? -629 233 5 8 1886 422 65 16 0 chr1 170563959 170564021 -26631411 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1886 636 14 0 0 chr1 170565693 170565766 -26629666 + (TG)n Simple_repeat Simple_repeat 2 74 0 8 1886 680 348 7 13 chr1 170565766 170565978 -26629454 - B4 SINE B4 -23 269 58 8 1886 720 0 0 0 chr1 170566667 170566747 -26628685 + (GA)n Simple_repeat Simple_repeat 1 80 0 8 1886 307 83 33 0 chr1 170567048 170567108 -26628324 + (CAAAA)n Simple_repeat Simple_repeat 3 64 0 8 1886 231 114 0 0 chr1 170567112 170567147 -26628285 + (CAG)n Simple_repeat Simple_repeat 1 35 0 8 1886 197 349 0 0 chr1 170567147 170567210 -26628222 - L2 LINE L2 -695 2724 2662 8 1886 30 27 0 0 chr1 170567241 170567278 -26628154 + AT_rich Low_complexity Low_complexity 1 37 0 9 1886 1011 256 115 53 chr1 170568307 170568855 -26626577 - L1MA9 LINE L1 -15 6999 6418 9 1886 407 271 138 5 chr1 170568857 170569108 -26626324 - L1MA9 LINE L1 -944 5901 5617 9 1886 1298 286 97 35 chr1 170569191 170569930 -26625502 - L1MA9 LINE L1 -1704 5138 4354 9 1886 7311 42 10 3 chr1 170569937 170571421 -26624011 - L1Md_F2 LINE L1 -2 6580 5082 9 1886 25 31 0 0 chr1 170571666 170571698 -26623734 + AT_rich Low_complexity Low_complexity 1 32 0 9 1886 497 350 44 47 chr1 170571787 170572215 -26623217 - Lx9 LINE L1 -238 7406 6980 9 1886 2133 102 0 21 chr1 170572268 170572598 -26622834 - L1Md_F2 LINE L1 -13 6569 6247 9 1886 7711 61 6 0 chr1 170572598 170573692 -26621740 - L1_Mm LINE L1 -3211 2672 1572 9 1886 37181 55 11 4 chr1 170573685 170580248 -26615184 - L1Md_T LINE L1 0 6582 99 9 1886 3917 117 1 2 chr1 170580251 170581214 -26614218 - L1Md_A LINE L1 -4291 1592 631 9 1886 288 288 88 44 chr1 170581262 170581603 -26613829 - L1MA9 LINE L1 -2859 3983 3628 9 1886 604 324 30 16 chr1 170581603 170581802 -26613630 - B3A SINE B2 -8 187 3 9 1886 546 345 75 26 chr1 170581802 170582293 -26613139 - L1MA9 LINE L1 -3203 3639 3125 9 1886 340 266 85 61 chr1 170582314 170582526 -26612906 - L1MA9 LINE L1 -3936 2914 2698 9 1886 454 295 68 32 chr1 170582988 170583365 -26612067 - L1MA9 LINE L1 -4199 2650 1925 9 1886 22 35 0 0 chr1 170583375 170583404 -26612028 + AT_rich Low_complexity Low_complexity 1 29 0 1 1886 29 0 0 0 chr1 170583615 170583644 -26611788 + AT_rich Low_complexity Low_complexity 1 29 0 1 1886 507 299 0 0 chr1 170583915 170584042 -26611390 - ID_B1 SINE B4 -11 213 87 1 1886 253 342 6 64 chr1 170583918 170584074 -26611358 + YREP_Mm Unknown Unknown 189 335 -1477 1 1886 403 320 74 53 chr1 170584460 170584744 -26610688 - B4A SINE B4 -1 291 2 1 1886 539 277 45 17 chr1 170584918 170585094 -26610338 - Lx7 LINE L1 -1919 5777 5597 1 1886 313 254 61 50 chr1 170585065 170585259 -26610173 + Lx7 LINE L1 5726 5927 -1717 1 1886 2892 174 220 74 chr1 170585397 170586184 -26609248 - RMER19B LTR ERVK 0 902 1 1 1886 1768 308 97 9 chr1 170586389 170587197 -26608235 + Lx8 LINE L1 6304 7182 -291 1 1886 251 258 10 30 chr1 170587929 170588029 -26607403 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 1886 209 180 20 0 chr1 170588029 170588079 -26607353 + (TATG)n Simple_repeat Simple_repeat 1 51 0 1 1886 216 0 0 0 chr1 170588092 170588116 -26607316 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 1 1886 634 122 26 13 chr1 170588148 170588383 -26607049 + (TG)n Simple_repeat Simple_repeat 1 238 0 1 1886 552 320 0 7 chr1 170589081 170589229 -26606203 + RSINE1 SINE B4 2 148 -17 1 1886 3380 134 147 7 chr1 170589387 170590084 -26605348 - RMER1B Other Other 0 1066 353 1 1886 224 308 30 15 chr1 170591577 170591643 -26603789 - MIRb SINE MIR -170 98 32 1 1886 468 0 0 0 chr1 170594329 170594381 -26601051 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1886 1147 165 4 89 chr1 170595016 170595262 -26600170 + URR1B DNA MER1_type 1 225 0 1 1886 870 246 109 32 chr1 170595311 170595559 -26599873 + B4A SINE B4 7 273 -19 1 1886 264 234 15 30 chr1 170596482 170596547 -26598885 - MER5B DNA MER1_type -3 175 112 1 1886 394 253 11 0 chr1 170596547 170596634 -26598798 + B4A SINE B4 4 91 -201 1 1886 355 283 425 14 chr1 170596726 170597021 -26598411 - RMER15 LTR ERVL -156 419 4 1 1886 775 308 5 15 chr1 170597025 170597223 -26598209 + B4A SINE B4 95 290 -2 1 1886 189 0 0 0 chr1 170597228 170597249 -26598183 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1886 201 343 18 45 chr1 170597369 170597479 -26597953 - MER5A DNA MER1_type 0 189 83 1 1886 1934 324 57 32 chr1 170597869 170598822 -26596610 - Lx8 LINE L1 -322 7151 6176 1 1886 180 77 0 0 chr1 170599212 170599238 -26596194 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1886 326 309 36 9 chr1 170599260 170599371 -26596061 + MER58B DNA MER1_type 228 341 0 1 1886 275 258 73 31 chr1 170599764 170599860 -26595572 + B1F SINE Alu 43 142 -7 1 1886 237 65 0 0 chr1 170599865 170599896 -26595536 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 1886 299 241 21 34 chr1 170599899 170599993 -26595439 + ID4_ SINE ID 10 102 -50 1 1886 480 318 107 82 chr1 170600735 170600891 -26594541 - B4A SINE B4 0 292 150 1 1886 2248 160 79 28 chr1 170600891 170601425 -26594007 - RLTR31_Mm LTR ERVK 0 561 1 1 1886 480 318 107 82 chr1 170601425 170601549 -26593883 - B4A SINE B4 -143 149 5 1 1886 27 0 0 0 chr1 170601715 170601742 -26593690 + AT_rich Low_complexity Low_complexity 1 27 0 1 1886 531 323 0 0 chr1 170601761 170601888 -26593544 - RSINE1 SINE B4 -36 129 3 1 1886 376 320 52 83 chr1 170603073 170603363 -26592069 - B4 SINE B4 -11 281 1 1 1886 243 330 51 41 chr1 170603811 170603909 -26591523 - MLT1A0 LTR MaLR -2 363 265 1 1886 576 0 0 0 chr1 170605036 170605100 -26590332 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1886 1332 203 34 47 chr1 170605161 170605481 -26589951 - MER2 DNA MER2_type -7 338 23 1 1886 223 376 11 11 chr1 170605571 170605665 -26589767 - MER5A DNA MER1_type -26 163 70 1 1886 256 354 0 15 chr1 170607338 170607470 -26587962 + CT-rich Low_complexity Low_complexity 5 134 0 1 1886 576 0 0 0 chr1 170607497 170607561 -26587871 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1886 309 51 0 0 chr1 170607765 170607804 -26587628 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1 1886 322 153 14 27 chr1 170608217 170608291 -26587141 + GA-rich Low_complexity Low_complexity 3 75 0 1 1886 924 146 0 0 chr1 170608294 170608472 -26586960 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1886 21 36 0 0 chr1 170609194 170609222 -26586210 + AT_rich Low_complexity Low_complexity 1 28 0 1 1886 184 333 58 0 chr1 170610315 170610384 -26585048 - MIRb SINE MIR -183 85 13 1 1886 277 402 68 34 chr1 170611372 170611578 -26583854 - MIRb SINE MIR -21 247 35 1 1886 234 270 35 18 chr1 170612065 170612178 -26583254 - L3b LINE CR1 -344 138 24 1 1886 302 45 23 0 chr1 170612659 170612703 -26582729 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1886 566 147 31 0 chr1 170612940 170613069 -26582363 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1886 442 295 135 22 chr1 170613133 170613362 -26582070 + ORR1E LTR MaLR 1 255 -104 1 1886 559 198 0 0 chr1 170613980 170614076 -26581356 + PB1D10 SINE Alu 1 96 -21 1 1886 276 77 0 0 chr1 170614699 170614738 -26580694 + (TTCTG)n Simple_repeat Simple_repeat 4 42 0 1 1886 1117 92 0 11 chr1 170617696 170617871 -26577561 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 1 1886 915 135 0 45 chr1 170619277 170619432 -26576000 + B1_Mur4 SINE Alu 2 149 -1 1 1886 3454 131 3 0 chr1 170620079 170620650 -26574782 - Lx LINE L1 -996 4887 4315 1 1886 6799 125 10 29 chr1 170620649 170622454 -26572978 + Lx LINE L1 4894 6650 -4 1 1886 260 294 24 0 chr1 170623613 170623698 -26571734 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1886 258 266 22 0 chr1 170623710 170623849 -26571583 + (TG)n Simple_repeat Simple_repeat 2 143 0 1 1886 387 0 0 0 chr1 170624982 170625025 -26570407 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1886 2908 46 0 0 chr1 170625630 170626000 -26569432 - Lx3_Mus LINE L1 -350 6659 6290 1 1886 2594 76 8 11 chr1 170626000 170626360 -26569072 + Lx3_Mus LINE L1 6643 7001 -8 1 1886 26 30 0 0 chr1 170627556 170627589 -26567843 + AT_rich Low_complexity Low_complexity 1 33 0 1 1886 211 321 45 56 chr1 170627640 170627659 -26567773 - B3A SINE B2 -108 90 3 1 1886 307 314 0 0 chr1 170627659 170627729 -26567703 - RSINE1 SINE B4 -92 73 4 1 1886 357 141 0 0 chr1 170627857 170627928 -26567504 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1 1886 636 308 6 0 chr1 170628205 170628361 -26567071 + RSINE1 SINE B4 1 157 -8 1 1886 3639 46 7 11 chr1 170628549 170629010 -26566422 + L1Md_F3 LINE L1 6111 6569 -15 1 1886 601 290 63 25 chr1 170629469 170629615 -26565817 - L1M2 LINE L1 -482 5809 5646 1 1886 573 15 0 0 chr1 170629615 170629681 -26565751 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1886 601 290 63 25 chr1 170629681 170629820 -26565612 - L1M2 LINE L1 -646 5645 5514 1 1886 892 359 62 25 chr1 170629986 170630434 -26564998 + MLT2B3 LTR ERVL 3 467 -87 1 1886 279 133 0 0 chr1 170630450 170630495 -26564937 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1886 1089 327 31 102 chr1 170630611 170630674 -26564758 - MTE-int LTR MaLR -136 1444 1384 1 1886 556 60 0 91 chr1 170630674 170630784 -26564648 - L1Md_F2 LINE L1 0 6582 6483 1 1886 1089 327 31 102 chr1 170630784 170631200 -26564232 - MTE-int LTR MaLR -197 1383 999 1 1886 2065 93 42 66 chr1 170631212 170631545 -26563887 - ORR1A2 LTR MaLR -2 325 1 1 1886 296 118 118 0 chr1 170631545 170631591 -26563841 - ORR1A2-int LTR MaLR 0 1963 1912 1 1886 2776 81 21 0 chr1 170631591 170631932 -26563500 + MTB LTR MaLR 1 349 -51 1 1886 4844 165 9 9 chr1 170631932 170632813 -26562619 - ORR1A2-int LTR MaLR -2 1961 430 1 1886 277 324 92 46 chr1 170632942 170633094 -26562338 - ORR1E LTR MaLR -105 254 96 1 1886 747 62 0 0 chr1 170633158 170633255 -26562177 + (CAGAA)n Simple_repeat Simple_repeat 1 97 0 1 1886 1768 147 108 51 chr1 170635475 170635524 -26559908 - ORR1B1 LTR MaLR 0 394 328 1 1886 3989 82 0 7 chr1 170635524 170636063 -26559369 + L1Md_F2 LINE L1 6048 6582 0 1 1886 1768 147 108 51 chr1 170636063 170636385 -26559047 - ORR1B1 LTR MaLR -67 327 2 1 1886 343 319 0 0 chr1 170636433 170636527 -26558905 - MIRb SINE MIR -14 254 161 1 1886 180 231 0 0 chr1 170637913 170637965 -26557467 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1886 366 123 0 0 chr1 170638005 170638062 -26557370 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1886 213 140 0 23 chr1 170639461 170639505 -26555927 + G-rich Low_complexity Low_complexity 6 48 0 1 1886 23 0 0 0 chr1 170640005 170640028 -26555404 + AT_rich Low_complexity Low_complexity 1 23 0 1 1886 672 182 0 0 chr1 170640296 170640428 -26555004 + T-rich Low_complexity Low_complexity 1 132 0 1 1886 655 227 0 39 chr1 170640430 170640586 -26554846 - B1_Mur4 SINE Alu 0 150 1 1 1886 468 0 0 0 chr1 170641196 170641248 -26554184 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1886 444 37 0 0 chr1 170641249 170641303 -26554129 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1886 513 0 0 0 chr1 170641303 170641359 -26554073 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1886 189 74 0 0 chr1 170641989 170642016 -26553416 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1886 465 340 39 0 chr1 170642316 170642522 -26552910 - B3 SINE B2 -2 214 1 1 1886 316 367 44 38 chr1 170642648 170642965 -26552467 - L1M5 LINE L1 -2724 3422 3104 1 1886 820 294 22 68 chr1 170643006 170643494 -26551938 - L1M5 LINE L1 -3142 3004 2539 1 1886 31 0 0 0 chr1 170643599 170643630 -26551802 + AT_rich Low_complexity Low_complexity 1 31 0 1 1886 921 59 33 0 chr1 170643727 170643879 -26551553 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 1 1886 2783 94 39 0 chr1 170643909 170644292 -26551140 + MTB LTR MaLR 3 400 0 1 1886 1536 268 97 15 chr1 170644321 170644339 -26551093 - Lx7 LINE L1 -282 7414 7397 1 1886 288 0 0 0 chr1 170644339 170644371 -26551061 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1886 1536 268 97 15 chr1 170644371 170644891 -26550541 - Lx7 LINE L1 -300 7396 6832 1 1886 1599 122 15 12 chr1 170644891 170645152 -26550280 + ORR1A2 LTR MaLR 1 278 -96 1 1886 411 302 14 7 chr1 170645152 170645292 -26550140 - Lx7 LINE L1 -1194 6502 6362 1 1886 513 204 41 0 chr1 170645297 170645395 -26550037 + ORR1C2 LTR MaLR 6 107 -277 1 1886 636 14 0 0 chr1 170645399 170645472 -26549960 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1 1886 669 145 94 0 chr1 170645474 170645591 -26549841 + ORR1C2 LTR MaLR 250 377 -7 1 1886 249 246 0 0 chr1 170645616 170645685 -26549747 - L1M4 LINE L1 -2583 3557 3489 1 1886 2219 242 30 2 chr1 170645693 170646227 -26549205 - RMER1C Other Other -8 1334 786 1 1886 270 204 19 0 chr1 170646280 170646334 -26549098 - ORR1B1 LTR MaLR 0 394 340 1 1886 831 174 15 44 chr1 170646355 170646537 -26548895 - B2_Mm2 SINE B2 -1 197 2 1 1886 2316 58 3 102 chr1 170646554 170646917 -26548515 - L1_Mus1 LINE L1 0 6567 6241 2 1886 1759 158 56 73 chr1 170646917 170647273 -26548159 - ORR1B1 LTR MaLR -44 350 1 1 1886 229 353 0 29 chr1 170647274 170647379 -26548053 - RMER1C Other Other -1211 131 30 2 1886 259 294 59 0 chr1 170647764 170647917 -26547515 - L1M4 LINE L1 -2681 3465 3304 1 1886 657 163 24 0 chr1 170649385 170649508 -26545924 - RMER1B Other Other -14 1052 927 2 1886 1846 283 24 117 chr1 170649602 170650434 -26544998 + RMER1C Other Other 579 1333 -9 2 235 33926 46 0 3 chr1 170650479 170655951 -26539481 + L1Md_T LINE L1 41 5589 -297 2 1887 8320 39 0 0 chr1 170655951 170656946 -26538486 + L1Md_T LINE L1 5590 6584 -1 2 1887 299 264 26 90 chr1 170657418 170657666 -26537766 - L1M4 LINE L1 -562 5621 5395 2 1887 315 0 0 0 chr1 170657741 170657776 -26537656 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1887 412 243 36 45 chr1 170657776 170657996 -26537436 - L1M4 LINE L1 -769 5377 5160 2 1887 480 18 0 0 chr1 170658017 170658074 -26537358 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1887 311 331 16 16 chr1 170658331 170658515 -26536917 - L1M4 LINE L1 -1347 4799 4616 2 1887 228 247 59 47 chr1 170658631 170658716 -26536716 - PB1D10 SINE Alu -4 113 28 2 1887 330 132 0 0 chr1 170658910 170658963 -26536469 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1887 24 53 0 0 chr1 170659337 170659375 -26536057 + AT_rich Low_complexity Low_complexity 1 38 0 2 1887 647 230 6 0 chr1 170659410 170659575 -26535857 + GA-rich Low_complexity Low_complexity 3 168 0 2 1887 468 101 390 32 chr1 170659598 170659721 -26535711 + ORR1A4 LTR MaLR 1 167 -162 2 1887 286 103 0 0 chr1 170659719 170659758 -26535674 + ORR1A4 LTR MaLR 283 321 -8 2 1887 216 0 0 0 chr1 170660765 170660789 -26534643 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1887 219 360 68 50 chr1 170660828 170660989 -26534443 - MIR3 SINE MIR -12 196 33 2 1887 239 270 0 0 chr1 170661888 170661951 -26533481 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1887 356 304 69 97 chr1 170661979 170662267 -26533165 - B4A SINE B4 -12 280 1 2 1887 200 394 0 0 chr1 170662374 170662440 -26532992 - MIRb SINE MIR -170 98 33 2 1887 742 331 28 39 chr1 170664868 170665123 -26530309 + B4 SINE B4 41 292 0 2 1887 441 0 0 0 chr1 170665128 170665177 -26530255 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1887 264 278 30 95 chr1 170665608 170665813 -26529619 - L2c LINE L2 0 3426 3223 2 1887 549 321 61 42 chr1 170666269 170666532 -26528900 + B4 SINE B4 10 277 -15 2 1887 183 129 0 0 chr1 170666542 170666573 -26528859 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1887 519 177 8 15 chr1 170666615 170666747 -26528685 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1887 221 175 0 0 chr1 170667267 170667307 -26528125 + A-rich Low_complexity Low_complexity 1 40 0 2 1887 239 345 33 11 chr1 170667432 170667523 -26527909 - MIRb SINE MIR -125 143 51 2 1887 1075 265 56 40 chr1 170668723 170669096 -26526336 - MTEb LTR MaLR 0 379 1 2 1887 2649 301 71 87 chr1 170669172 170670091 -26525341 - MTEb-int LTR MaLR -521 1059 174 2 1887 995 25 8 0 chr1 170670091 170670213 -26525219 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 2 1887 2649 301 71 87 chr1 170670213 170670370 -26525062 - MTEb-int LTR MaLR -1407 173 1 2 1887 738 328 46 38 chr1 170670387 170670625 -26524807 - MTEb LTR MaLR -26 353 114 2 1887 302 319 51 15 chr1 170670626 170670763 -26524669 - L1MC4 LINE L1 -694 7348 7207 2 1887 211 167 16 32 chr1 170670835 170670897 -26524535 + CT-rich Low_complexity Low_complexity 4 64 0 2 1887 290 318 31 62 chr1 170670902 170671127 -26524305 - L1MC4 LINE L1 -1110 6772 6555 2 1887 316 307 45 11 chr1 170671157 170671246 -26524186 + B1F SINE Alu 2 93 -56 2 1887 375 41 0 0 chr1 170671246 170671295 -26524137 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1887 393 22 0 0 chr1 170671295 170671340 -26524092 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1887 317 344 123 21 chr1 170671892 170672128 -26523304 + MLT1J2 LTR MaLR 30 287 -161 2 1887 671 219 37 62 chr1 170672629 170672790 -26522642 + MTE2a LTR MaLR 129 285 -94 2 1887 453 36 0 0 chr1 170674113 170674168 -26521264 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1887 237 33 0 0 chr1 170674181 170674211 -26521221 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1887 701 239 0 0 chr1 170674211 170674345 -26521087 - B1_Mus2 SINE Alu -13 134 1 2 1887 213 94 0 0 chr1 170674885 170674917 -26520515 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1887 1145 88 0 0 chr1 170674917 170675064 -26520368 - B1_Mus2 SINE Alu 0 147 1 2 1887 2943 40 0 3 chr1 170675230 170675577 -26519855 + ORR1A1 LTR MaLR 1 346 0 2 1887 3406 209 100 43 chr1 170675933 170676839 -26518593 - RMER17B LTR ERVK 0 958 1 2 1887 438 299 96 7 chr1 170676850 170676985 -26518447 + ORR1E LTR MaLR 1 147 -212 2 1887 557 198 0 10 chr1 170677378 170677475 -26517957 - B1_Mur1 SINE Alu -8 141 46 2 1887 2211 143 74 39 chr1 170677730 170678411 -26517021 + L1VL4 LINE L1 496 1174 -2385 2 1887 185 119 24 0 chr1 170678415 170678457 -26516975 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1887 189 103 0 65 chr1 170678450 170678512 -26516920 + A-rich Low_complexity Low_complexity 3 60 0 2 1887 290 83 21 0 chr1 170678536 170678584 -26516848 + Lx2B LINE L1 1542 1590 -4296 2 1887 8146 134 35 19 chr1 170678552 170680494 -26514938 + Lx2B LINE L1 5028 6996 -4 2 1887 223 247 37 12 chr1 170680750 170680832 -26514600 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 2 1887 2987 60 31 8 chr1 170680852 170681238 -26514194 + MTA_Mm LTR MaLR 1 395 -1 2 1887 28 0 0 0 chr1 170681823 170681851 -26513581 + AT_rich Low_complexity Low_complexity 1 28 0 2 1887 353 363 87 14 chr1 170682341 170682548 -26512884 + ORR1E LTR MaLR 3 224 -135 2 1887 328 307 62 23 chr1 170682875 170683005 -26512427 + B1F1 SINE Alu 7 141 -8 2 1887 231 196 122 44 chr1 170683021 170683108 -26512324 + ID2 SINE ID 3 95 -57 2 1887 420 200 25 0 chr1 170683334 170683454 -26511978 + (TA)n Simple_repeat Simple_repeat 2 124 0 2 1887 226 333 0 0 chr1 170683500 170683560 -26511872 + RSINE1 SINE B4 3 62 -103 2 1887 516 16 0 0 chr1 170683929 170683990 -26511442 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1887 315 65 0 0 chr1 170685801 170685847 -26509585 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 1887 1108 65 0 0 chr1 170685847 170685985 -26509447 - B1_Mus2 SINE Alu -9 138 1 2 1887 495 90 0 0 chr1 170686086 170686164 -26509268 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1887 859 246 39 5 chr1 170686562 170686766 -26508666 - B3 SINE B2 -4 212 2 2 1887 308 245 61 0 chr1 170686849 170686947 -26508485 - MER5A1 DNA MER1_type -60 106 3 2 1887 234 0 0 0 chr1 170687033 170687059 -26508373 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1887 4180 47 11 2 chr1 170687098 170687626 -26507806 - L1Md_F3 LINE L1 -14 6570 6038 2 1887 2761 30 0 0 chr1 170687645 170687980 -26507452 + L1Md_F3 LINE L1 5587 5921 -663 2 1887 378 226 143 0 chr1 170687983 170688067 -26507365 - B1_Mm SINE Alu -37 110 15 2 1887 318 151 0 0 chr1 170688396 170688469 -26506963 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1887 360 0 0 0 chr1 170688801 170688841 -26506591 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1887 23 0 0 0 chr1 170689540 170689563 -26505869 + AT_rich Low_complexity Low_complexity 1 23 0 2 1887 490 283 0 0 chr1 170689578 170689691 -26505741 + ID_B1 SINE B4 111 223 -1 2 1887 1171 55 18 0 chr1 170689761 170689924 -26505508 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 2 1887 21 0 0 0 chr1 170690213 170690234 -26505198 + AT_rich Low_complexity Low_complexity 1 21 0 2 1887 255 308 109 17 chr1 170691439 170691558 -26503874 + AmnSINE1 SINE SINE 234 363 -212 2 1887 297 290 10 51 chr1 170691811 170691909 -26503523 + AmnSINE1 SINE SINE 390 483 -92 2 1887 607 316 60 87 chr1 170692289 170692315 -26503117 - B4A SINE B4 0 292 272 2 1887 459 0 0 0 chr1 170692315 170692366 -26503066 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 1887 607 316 60 87 chr1 170692366 170692637 -26502795 - B4A SINE B4 -21 271 3 2 1887 285 29 0 0 chr1 170692905 170692939 -26502493 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2 1887 368 242 39 55 chr1 170692943 170693070 -26502362 + Lx9 LINE L1 6357 6481 -1163 2 1887 250 360 18 0 chr1 170693071 170693182 -26502250 - PB1D7 SINE Alu 0 120 8 2 1887 22169 138 102 14 chr1 170695310 170697991 -26497441 + Lx4B LINE L1 630 3470 -2407 2 1887 311 0 26 0 chr1 170697991 170698030 -26497402 + (CAA)n Simple_repeat Simple_repeat 1 40 0 2 1887 22169 135 70 12 chr1 170698030 170701324 -26494108 + Lx4B LINE L1 3471 7058 0 2 1887 436 321 32 101 chr1 170701338 170701362 -26494070 - CYRA11_Mm Unknown Y-chromosome -209 408 323 2 1887 1281 151 4 56 chr1 170701362 170701594 -26493838 + URR1B DNA MER1_type 1 220 -5 2 1887 436 321 32 101 chr1 170701594 170701646 -26493786 - CYRA11_Mm Unknown Y-chromosome -209 322 122 2 1887 811 287 155 33 chr1 170701680 170702110 -26493322 + Lx8 LINE L1 6860 7341 -132 2 1887 2140 227 39 117 chr1 170702172 170702941 -26492491 + RMER1B Other Other 364 1055 -11 2 1887 972 307 75 48 chr1 170703690 170704545 -26490887 + L1M2 LINE L1 2207 3084 -3059 2 1887 327 323 46 0 chr1 170704554 170704684 -26490748 - MIRb SINE MIR -117 151 16 2 1887 447 349 109 12 chr1 170704978 170705300 -26490132 + L2 LINE L2 2618 2970 -449 2 1887 895 177 119 5 chr1 170705502 170705695 -26489737 + URR1A DNA MER1_type 2 216 -10 2 1887 22 0 0 0 chr1 170706108 170706130 -26489302 + AT_rich Low_complexity Low_complexity 1 22 0 2 1887 579 321 77 24 chr1 170706131 170706588 -26488844 - L1ME3B LINE L1 -357 5883 5403 2 1887 240 255 24 71 chr1 170707246 170707415 -26488017 - L1ME3B LINE L1 -1549 4597 4437 2 1887 399 337 90 0 chr1 170707867 170708033 -26487399 - MLT2B4 LTR ERVL -367 189 9 2 1887 336 83 0 0 chr1 170708429 170708477 -26486955 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2 1887 587 326 14 0 chr1 170708488 170708632 -26486800 - RSINE1 SINE B4 -17 148 3 2 1887 485 313 83 23 chr1 170708743 170708959 -26486473 - B4A SINE B4 -62 230 2 2 1887 195 121 52 0 chr1 170709074 170709132 -26486300 + T-rich Low_complexity Low_complexity 2 62 0 2 1887 1377 73 0 0 chr1 170709672 170710000 -26485432 + (TATG)n Simple_repeat Simple_repeat 1 328 0 2 1887 329 270 71 21 chr1 170710006 170710146 -26485286 + L2a LINE L2 3280 3426 0 2 1887 502 292 169 2 chr1 170710352 170710571 -26484861 - MER44A DNA MER2_type 0 339 89 2 1887 481 199 44 108 chr1 170710574 170710777 -26484655 - Lx7 LINE L1 0 7696 7507 2 1887 1790 47 9 0 chr1 170710791 170711023 -26484409 - L1Md_F2 LINE L1 -632 5950 5717 2 1887 4816 62 11 7 chr1 170711023 170711639 -26483793 + L1Md_F2 LINE L1 5952 6570 -12 2 1887 952 268 78 4 chr1 170711758 170712028 -26483404 - Lx6 LINE L1 -221 7239 6950 3 1887 327 138 49 49 chr1 170712030 170712091 -26483341 + HAL1-3A_ME LINE L1 1969 2029 -829 3 1887 250 171 0 0 chr1 170712367 170712408 -26483024 - MIR SINE MIR -7 255 215 3 1887 204 352 37 28 chr1 170712881 170712989 -26482443 - L2 LINE L2 -641 2778 2670 3 1887 2265 337 53 31 chr1 170713132 170714394 -26481038 - Lx8 LINE L1 -44 7429 6140 3 1887 431 328 25 0 chr1 170714547 170714666 -26480766 - B1F2 SINE Alu -7 142 21 3 1887 566 312 32 32 chr1 170714902 170715150 -26480282 + MLT1D LTR MaLR 252 499 -6 3 1887 189 74 0 0 chr1 170716052 170716079 -26479353 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1887 619 233 15 8 chr1 170716092 170716222 -26479210 - B1_Mur1 SINE Alu -16 133 3 3 1887 316 125 0 30 chr1 170717761 170717827 -26477605 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1887 247 235 0 29 chr1 170717856 170717926 -26477506 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 3 1887 473 294 95 26 chr1 170717967 170718156 -26477276 - B4A SINE B4 -90 202 1 3 1887 836 273 67 0 chr1 170718414 170718696 -26476736 - Lx9 LINE L1 -645 6999 6699 3 1887 7098 109 10 4 chr1 170720235 170721625 -26473807 + Lx LINE L1 5239 6639 -15 3 1887 198 0 0 0 chr1 170721625 170721647 -26473785 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 3 1887 1712 186 19 64 chr1 170721904 170722323 -26473109 - MTB LTR MaLR 0 400 1 3 1887 937 311 51 76 chr1 170724970 170725482 -26469950 + MLT1D LTR MaLR 1 499 -6 3 1887 392 250 30 43 chr1 170725936 170726029 -26469403 + PB1D10 SINE Alu 2 99 -18 3 1887 315 71 0 0 chr1 170726030 170726072 -26469360 + (TCC)n Simple_repeat Simple_repeat 3 44 0 3 1887 360 0 0 0 chr1 170726072 170726112 -26469320 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1887 423 0 0 0 chr1 170726112 170726158 -26469274 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1887 378 292 57 0 chr1 170726641 170726747 -26468685 - B1F SINE Alu -18 131 20 3 1887 5427 137 15 1 chr1 170727604 170728464 -26466968 - Lx4A LINE L1 -67 6991 6120 3 1887 486 305 38 30 chr1 170729109 170729373 -26466059 + L1M5 LINE L1 5537 5802 -322 3 1887 25 31 0 0 chr1 170729590 170729622 -26465810 + AT_rich Low_complexity Low_complexity 1 32 0 3 1887 1377 223 64 26 chr1 170730866 170731179 -26464253 - MTEb LTR MaLR -54 325 1 3 1887 245 323 131 97 chr1 170731179 170731211 -26464221 - MLT2B5 LTR ERVL -570 147 109 3 1887 298 329 181 28 chr1 170731532 170731676 -26463756 - MER63A DNA AcHobo -38 172 7 3 1887 973 248 65 32 chr1 170731771 170732109 -26463323 - Lx9 LINE L1 -278 7366 7018 3 1887 765 114 0 0 chr1 170732229 170732352 -26463080 + (TCC)n Simple_repeat Simple_repeat 1 123 0 3 1887 2953 210 32 42 chr1 170732738 170733425 -26462007 + Lx6 LINE L1 6591 7270 -190 3 1887 24 67 0 0 chr1 170734247 170734292 -26461140 + AT_rich Low_complexity Low_complexity 1 45 0 3 1887 2567 79 5 24 chr1 170734292 170734666 -26460766 - L1_Mus3 LINE L1 -7 6631 6265 3 1887 180 312 169 36 chr1 170735641 170735724 -26459708 + L2 LINE L2 15 108 -3311 3 1887 257 155 17 0 chr1 170738020 170738078 -26457354 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 3 1887 2733 184 28 66 chr1 170738437 170739072 -26456360 + RMER19C LTR ERVK 1 611 0 3 1887 311 314 35 17 chr1 170740428 170740600 -26454832 + L1MEc LINE L1 575 749 -5651 3 1887 246 279 0 29 chr1 170740741 170740811 -26454621 + MLT1A0 LTR MaLR 74 141 -224 3 1887 1503 70 0 9 chr1 170740813 170741160 -26454272 + (TTTC)n Simple_repeat Simple_repeat 1 344 0 3 1887 666 95 0 0 chr1 170741150 170741245 -26454187 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 3 1887 522 0 0 0 chr1 170741245 170741303 -26454129 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 3 1887 342 0 0 0 chr1 170741311 170741349 -26454083 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 3 1887 500 233 51 29 chr1 170741350 170741487 -26453945 - B1_Mur3 SINE Alu -8 141 2 3 1887 341 322 113 17 chr1 170741664 170741841 -26453591 + L1MEc LINE L1 840 1033 -5367 3 1887 314 283 150 10 chr1 170741929 170742136 -26453296 + L1MEc LINE L1 1110 1345 -5055 3 1887 266 258 32 11 chr1 170742161 170742255 -26453177 + L1MEc LINE L1 1647 1742 -4673 3 1887 432 323 83 53 chr1 170742304 170742425 -26453007 + L1MEc LINE L1 1768 1883 -4517 3 1887 1398 264 11 8 chr1 170742425 170742803 -26452629 + MTEb LTR MaLR 1 379 0 3 1887 432 323 83 53 chr1 170742803 170743018 -26452414 + L1MEc LINE L1 1884 2114 -4286 3 1887 2652 264 95 17 chr1 170743058 170744510 -26450922 + Tigger7 DNA MER2_type 112 1676 -815 3 1887 515 253 126 26 chr1 170744492 170744683 -26450749 + B3 SINE B2 6 215 -1 3 1887 702 263 69 35 chr1 170744690 170744950 -26450482 + Tigger7 DNA MER2_type 1654 1922 -569 3 1887 1288 189 58 15 chr1 170745001 170745328 -26450104 - Lx6 LINE L1 0 7696 7356 3 1887 2172 231 37 38 chr1 170745389 170745988 -26449444 - Lx6 LINE L1 -337 7359 6762 3 1887 297 0 0 0 chr1 170746014 170746047 -26449385 + (TTA)n Simple_repeat Simple_repeat 2 34 0 3 1887 4288 213 24 24 chr1 170746058 170747717 -26447715 - Lx6 LINE L1 -710 6750 5085 3 1887 3760 181 32 22 chr1 170747710 170748606 -26446826 - Lx6 LINE L1 -2146 3734 2830 3 1887 1495 221 11 15 chr1 170748607 170749016 -26446416 + Lx9 LINE L1 5502 5947 -1697 3 1887 323 320 10 0 chr1 170749040 170749140 -26446292 - Lx8 LINE L1 -895 6578 6478 3 1887 871 299 47 7 chr1 170749160 170749460 -26445972 + Tigger7 DNA MER2_type 1944 2255 -236 3 1887 385 310 92 68 chr1 170749667 170749916 -26445516 + L1M5 LINE L1 5432 5686 -493 3 1887 504 0 0 0 chr1 170750367 170750423 -26445009 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1887 508 355 109 8 chr1 170750458 170750697 -26444735 + B4A SINE B4 3 265 -27 3 1887 296 175 16 0 chr1 170750723 170750786 -26444646 + CT-rich Low_complexity Low_complexity 2 65 0 3 1887 378 0 0 0 chr1 170750787 170750829 -26444603 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1887 309 266 97 44 chr1 170751036 170751150 -26444282 + ORR1E LTR MaLR 4 123 -236 3 1887 647 323 16 21 chr1 170753823 170754013 -26441419 + B3A SINE B2 9 197 -1 3 1887 342 0 0 0 chr1 170754470 170754508 -26440924 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1887 927 226 226 4 chr1 170754508 170754821 -26440611 + MTD LTR MaLR 6 419 0 3 1887 261 388 132 0 chr1 170756414 170756566 -26438866 - LTR16A LTR ERVL 0 451 280 3 1887 579 15 0 0 chr1 170756832 170756900 -26438532 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1887 417 280 0 0 chr1 170756933 170757026 -26438406 + MTE2b LTR MaLR 6 98 -281 3 1887 755 301 50 39 chr1 170757030 170757310 -26438122 + MTE2b LTR MaLR 62 344 -35 3 1887 283 333 8 26 chr1 170757757 170757874 -26437558 - Cheshire DNA MER1_type -2134 286 172 3 1887 261 305 144 8 chr1 170758415 170758547 -26436885 + MTEb LTR MaLR 227 376 -3 3 1887 393 178 29 29 chr1 170759209 170759348 -26436084 + (TA)n Simple_repeat Simple_repeat 2 140 0 3 1887 701 301 18 18 chr1 170759983 170760210 -26435222 + MTE-int LTR MaLR 75 301 -1279 3 1887 200 326 81 10 chr1 170760971 170761070 -26434362 - MIRb SINE MIR -7 261 156 3 1887 688 373 83 49 chr1 170761265 170761996 -26433436 - L1ME2 LINE L1 -3 6161 5406 3 1887 397 373 182 23 chr1 170761996 170762036 -26433396 + L2 LINE L2 1926 1964 -1455 3 1887 207 0 0 0 chr1 170762036 170762059 -26433373 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1887 397 373 182 23 chr1 170762059 170762810 -26432622 + L2 LINE L2 1965 2842 -577 3 1887 202 333 0 0 chr1 170763090 170763147 -26432285 - MIRb SINE MIR -186 82 26 3 1887 334 319 145 21 chr1 170763437 170763623 -26431809 - MIR SINE MIR -28 234 26 3 1887 212 349 0 0 chr1 170765113 170765179 -26430253 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1887 317 73 0 0 chr1 170765180 170765221 -26430211 - HAL1-3A_ME LINE L1 -846 2012 1972 3 1887 473 271 36 0 chr1 170765240 170765380 -26430052 - L1MC1 LINE L1 -120 6213 6069 3 1887 548 277 9 84 chr1 170765850 170766063 -26429369 - RMER30 DNA MER1_type -1 201 5 3 1887 318 260 156 17 chr1 170766907 170767087 -26428345 - L1M3 LINE L1 -1236 4904 4700 3 1887 324 231 95 27 chr1 170767161 170767308 -26428124 + L1MA10 LINE L1 6060 6216 -118 3 1887 522 171 24 0 chr1 170767317 170767440 -26427992 + CT-rich Low_complexity Low_complexity 4 129 0 3 1887 201 39 0 0 chr1 170767649 170767675 -26427757 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1887 214 286 16 0 chr1 170767676 170767739 -26427693 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 3 1887 858 20 0 0 chr1 170767856 170767956 -26427476 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 3 1887 207 0 0 0 chr1 170767962 170767985 -26427447 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 3 1887 375 295 12 3 chr1 170768099 170768179 -26427253 - B1F1 SINE Alu -8 141 67 3 1887 2911 68 47 0 chr1 170768179 170768561 -26426871 + MTB LTR MaLR 1 400 0 3 1887 375 331 29 7 chr1 170768561 170768622 -26426810 - B1F1 SINE Alu -83 66 3 3 1887 279 301 14 14 chr1 170770229 170770303 -26425129 - RSINE1 SINE B4 -14 151 78 3 1887 669 330 26 16 chr1 170770537 170770942 -26424490 - L1MB1 LINE L1 -278 6034 5628 3 1887 526 293 14 52 chr1 170770930 170771218 -26424214 + L1MA10 LINE L1 6054 6330 -4 3 1887 330 281 105 28 chr1 170771545 170771688 -26423744 - RSINE1 SINE B4 -10 155 2 3 1887 438 20 0 0 chr1 170772419 170772470 -26422962 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1887 234 0 0 0 chr1 170772470 170772495 -26422937 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1887 1061 280 75 39 chr1 170772607 170772967 -26422465 - MTE2b LTR MaLR 0 379 7 3 1887 387 294 118 26 chr1 170772968 170773193 -26422239 + MTEa LTR MaLR 109 379 0 3 1887 717 307 51 160 chr1 170773515 170773868 -26421564 - MLT1D LTR MaLR -17 488 142 3 1887 598 254 137 0 chr1 170773868 170774065 -26421367 - URR1A DNA MER1_type -1 225 2 3 1887 717 307 51 160 chr1 170774065 170774161 -26421271 - MLT1D LTR MaLR -356 149 66 3 1887 488 237 0 10 chr1 170774237 170774335 -26421097 + B4A SINE B4 1 97 -195 3 1887 273 302 33 140 chr1 170774351 170774501 -26420931 + B4A SINE B4 159 292 0 3 1887 6757 124 23 13 chr1 170775201 170776544 -26418888 - Lx2 LINE L1 -17 6983 5519 3 1887 208 383 47 8 chr1 170776639 170776768 -26418664 - MIRb SINE MIR -45 223 90 3 1887 930 58 0 0 chr1 170776853 170776973 -26418459 + Lx LINE L1 5672 5791 -863 3 1887 2264 114 40 30 chr1 170776973 170777345 -26418087 + Lx LINE L1 6273 6648 -6 3 1887 230 241 0 33 chr1 170779456 170779516 -26415916 - PB1D10 SINE Alu -43 74 17 3 1887 347 303 96 27 chr1 170779530 170779676 -26415756 + MLT1A LTR MaLR 167 322 -52 3 1887 183 143 163 0 chr1 170779709 170779758 -26415674 + L3 LINE CR1 2796 2852 -1637 4 1887 245 193 18 0 chr1 170780788 170780845 -26414587 + L1M7 LINE L1 2078 2135 -4083 4 1887 198 0 0 0 chr1 170781950 170781972 -26413460 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1887 522 0 0 0 chr1 170781972 170782029 -26413403 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1887 429 325 47 28 chr1 170782607 170782819 -26412613 + MLT1A0 LTR MaLR 150 365 0 4 1887 2884 51 3 0 chr1 170782861 170783232 -26412200 - L1_Mus2 LINE L1 -515 6051 5680 4 1887 871 94 14 7 chr1 170783232 170783371 -26412061 + L1_Mus2 LINE L1 6427 6566 0 4 235 39241 26 3 6 chr1 170783598 170789625 -26405807 - L1Md_T LINE L1 -1 6581 587 4 1888 6330 98 62 5 chr1 170789689 170790643 -26404789 - Lx3_Mus LINE L1 0 7009 6002 4 1888 4879 82 8 14 chr1 170790644 170791518 -26403914 + Lx3_Mus LINE L1 5129 5961 -1048 4 1888 947 221 19 9 chr1 170793052 170793262 -26402170 - B3 SINE B2 -3 213 2 4 1888 24 0 0 0 chr1 170794155 170794179 -26401253 + AT_rich Low_complexity Low_complexity 1 24 0 4 1888 1153 75 0 0 chr1 170794319 170794466 -26400966 - B1_Mus1 SINE Alu -1 147 1 4 1888 552 311 38 33 chr1 170795157 170795370 -26400062 - B3 SINE B2 0 216 3 4 1888 256 365 0 0 chr1 170795817 170795924 -26399508 - PB1D10 SINE Alu -8 109 3 4 1888 444 297 145 11 chr1 170796176 170796445 -26398987 + Charlie4a DNA MER1_type 108 412 -96 4 1888 1542 188 50 72 chr1 170796607 170797049 -26398383 + Lx7 LINE L1 7259 7690 -6 4 1888 625 189 75 45 chr1 170797052 170797185 -26398247 + B1_Mm SINE Alu 11 147 0 4 1888 25 31 0 0 chr1 170797219 170797251 -26398181 + AT_rich Low_complexity Low_complexity 1 32 0 4 1888 427 264 24 24 chr1 170798159 170798283 -26397149 + B4 SINE B4 6 129 -163 4 1888 436 149 11 11 chr1 170798486 170798581 -26396851 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1888 545 259 9 33 chr1 170800216 170800377 -26395055 - B3A SINE B2 -6 210 54 4 1888 564 321 36 21 chr1 170801442 170801636 -26393796 + B3A SINE B2 1 197 -1 4 1888 253 300 45 0 chr1 170801760 170801837 -26393595 - ID4_ SINE ID -72 80 1 4 1888 363 351 24 45 chr1 170802448 170802700 -26392732 + L1M3e LINE L1 1506 1859 -5171 4 1888 450 127 0 0 chr1 170802757 170802828 -26392604 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 1888 2158 93 51 0 chr1 170803507 170803818 -26391614 - ORR1A2 LTR MaLR 0 327 1 4 1888 245 301 79 9 chr1 170803925 170804039 -26391393 + ORR1D2 LTR MaLR 18 139 -231 4 1888 225 0 0 0 chr1 170804222 170804247 -26391185 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 4 1888 359 225 30 90 chr1 170804335 170804501 -26390931 + L1M3e LINE L1 3070 3225 -3875 4 1888 265 353 64 8 chr1 170805607 170805858 -26389574 + L1M3e LINE L1 3431 3695 -3405 4 1888 2168 192 13 21 chr1 170806126 170806515 -26388917 - MTC LTR MaLR 0 421 36 4 1888 496 261 149 20 chr1 170806519 170806820 -26388612 + L1MA9 LINE L1 5326 5665 -524 4 1888 602 280 45 40 chr1 170806877 170807279 -26388153 - L1_Mur3 LINE L1 -765 5535 5092 4 1888 360 202 37 83 chr1 170807528 170807636 -26387796 + L1MA9 LINE L1 5662 5764 -527 4 1888 500 30 15 0 chr1 170807638 170807704 -26387728 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1888 659 292 42 15 chr1 170807708 170807972 -26387460 + L1MA9 LINE L1 6040 6310 -2 4 1888 359 222 12 0 chr1 170808102 170808183 -26387249 + Lx7 LINE L1 6317 6398 -1298 4 1888 1435 132 5 0 chr1 170808346 170808565 -26386867 - L1_Mus4 LINE L1 -394 5489 5270 4 1888 5881 75 7 4 chr1 170808558 170809366 -26386066 + L1_Mus4 LINE L1 5546 6356 -280 4 1888 576 246 144 90 chr1 170810446 170810647 -26384785 + MLT2B1 LTR ERVL 47 258 -262 4 1888 663 50 30 0 chr1 170811891 170811991 -26383441 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1888 607 323 77 48 chr1 170812241 170812666 -26382766 + MTD LTR MaLR 4 374 -5 4 1888 22 0 0 0 chr1 170813171 170813193 -26382239 + AT_rich Low_complexity Low_complexity 1 22 0 4 1888 2781 109 86 0 chr1 170813200 170813630 -26381802 + L1_Mus3 LINE L1 6169 6635 -3 4 1888 183 121 0 0 chr1 170813873 170813890 -26381542 + (TATATG)n Simple_repeat Simple_repeat 2 18 0 4 1888 330 26 0 0 chr1 170813890 170813929 -26381503 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1888 183 121 0 0 chr1 170813929 170813944 -26381488 + (TATATG)n Simple_repeat Simple_repeat 5 19 0 4 1888 268 77 26 0 chr1 170813957 170813996 -26381436 - L1_Mus2 LINE L1 -300 6266 6227 4 1888 301 323 10 0 chr1 170813996 170814095 -26381337 - ID_B1 SINE B4 -123 101 2 4 1888 341 344 42 9 chr1 170814258 170814469 -26380963 - Lx8 LINE L1 -248 7396 7151 4 1888 309 293 8 8 chr1 170814710 170814827 -26380605 - L1MEg LINE L1 -5129 955 839 4 1888 2791 22 0 0 chr1 170814956 170815278 -26380154 - RLTRETN_Mm LTR ERVK 0 322 1 4 1888 213 65 0 0 chr1 170815305 170815336 -26380096 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 4 1888 433 333 63 95 chr1 170815685 170816063 -26379369 - ORR1D2 LTR MaLR -3 367 2 4 1888 21 89 0 0 chr1 170816701 170816757 -26378675 + AT_rich Low_complexity Low_complexity 1 56 0 4 1888 305 314 72 0 chr1 170816937 170817144 -26378288 + L1M5 LINE L1 4117 4338 -1808 4 1888 330 300 121 51 chr1 170817627 170817982 -26377450 + L1MC4 LINE L1 2134 2513 -3702 4 1888 3069 107 0 7 chr1 170817985 170818435 -26376997 - L1_Mus4 LINE L1 -3 6633 6187 4 1888 803 124 0 0 chr1 170818436 170818557 -26376875 + L1_Mus4 LINE L1 6018 6138 -498 4 1888 207 317 0 0 chr1 170818708 170818768 -26376664 + (CATG)n Simple_repeat Simple_repeat 3 62 0 4 1888 579 135 0 0 chr1 170818768 170818864 -26376568 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1888 1822 246 23 21 chr1 170818870 170819288 -26376144 + MTD LTR MaLR 1 406 -13 4 1888 233 29 29 0 chr1 170819420 170819454 -26375978 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1888 1157 70 0 0 chr1 170819462 170819604 -26375828 - B1_Mus1 SINE Alu -5 143 2 4 1888 532 298 113 11 chr1 170821311 170821576 -26373856 + Lx8 LINE L1 7179 7470 -3 4 1888 324 48 0 0 chr1 170821590 170821632 -26373800 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1888 476 143 22 43 chr1 170822714 170822853 -26372579 + (TATG)n Simple_repeat Simple_repeat 3 138 0 4 1888 22 56 0 0 chr1 170823017 170823053 -26372379 + AT_rich Low_complexity Low_complexity 1 36 0 4 1888 518 148 79 12 chr1 170823163 170823327 -26372105 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 4 1888 523 224 48 67 chr1 170823683 170823923 -26371509 - Lx9 LINE L1 -397 7247 6963 4 1888 693 0 0 0 chr1 170824877 170824954 -26370478 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1888 181 0 69 0 chr1 170825090 170825119 -26370313 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1888 456 286 79 23 chr1 170825556 170825821 -26369611 + L1MC4 LINE L1 7223 7502 -540 4 1888 612 266 105 0 chr1 170825834 170825977 -26369455 + RSINE1 SINE B4 8 165 0 4 1888 3134 49 0 0 chr1 170825989 170826375 -26369057 - L1Md_F2 LINE L1 -12 6570 6185 4 1888 406 287 30 56 chr1 170826597 170826866 -26368566 + L1MC4 LINE L1 7781 8042 0 4 1888 233 353 41 38 chr1 170827100 170827248 -26368184 + MIR SINE MIR 78 230 -38 4 1888 230 259 0 0 chr1 170827263 170827317 -26368115 + T-rich Low_complexity Low_complexity 2 55 0 4 1888 674 318 34 68 chr1 170827735 170828059 -26367373 - MTEb LTR MaLR 0 379 67 4 1888 24 53 0 0 chr1 170828203 170828241 -26367191 + AT_rich Low_complexity Low_complexity 1 38 0 4 1888 519 271 19 37 chr1 170828254 170828415 -26367017 - RSINE1 SINE B4 -4 161 4 4 1888 1435 263 32 23 chr1 170828731 170829074 -26366358 - ORR1E LTR MaLR -6 353 8 4 1888 500 331 8 8 chr1 170830081 170830212 -26365220 + RSINE1 SINE B4 6 136 -29 4 1888 456 19 0 0 chr1 170830226 170830279 -26365153 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1888 513 0 0 0 chr1 170830339 170830396 -26365036 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 1888 444 82 0 0 chr1 170830902 170830963 -26364469 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1888 1056 317 184 6 chr1 170830974 170831523 -26363909 - Lx8 LINE L1 -151 7322 6676 4 1888 678 267 31 67 chr1 170831602 170831949 -26363483 + Lx8 LINE L1 4174 4509 -1371 4 1888 7851 76 16 2 chr1 170831949 170833255 -26362177 - L1_Mus1 LINE L1 -489 6077 4745 4 1888 3873 68 0 0 chr1 170833255 170833739 -26361693 + L1_Mus1 LINE L1 6084 6567 0 4 1888 1752 296 41 103 chr1 170833884 170834698 -26360734 + Lx8 LINE L1 4500 5265 -615 4 1888 414 0 0 0 chr1 170834698 170834744 -26360688 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 4 1888 1752 296 41 103 chr1 170834744 170835291 -26360141 + Lx8 LINE L1 5266 5776 -104 4 1888 270 164 17 119 chr1 170835295 170835413 -26360019 + Lx2B LINE L1 6895 7000 0 4 1888 621 299 85 78 chr1 170835413 170836109 -26359323 + Lx8 LINE L1 5754 6444 -1029 4 1888 356 179 13 0 chr1 170836349 170836427 -26359005 + CT-rich Low_complexity Low_complexity 3 81 0 4 1888 2426 111 17 3 chr1 170836997 170837359 -26358073 + Lx LINE L1 6284 6650 -4 4 1888 228 200 40 0 chr1 170837413 170837463 -26357969 + MER53 DNA hAT 72 123 -70 4 1888 365 362 116 13 chr1 170837484 170837940 -26357492 - Lx8 LINE L1 -2 7471 6969 4 1888 196 222 14 14 chr1 170838557 170838630 -26356802 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1888 326 288 39 60 chr1 170840717 170840882 -26354550 - B4A SINE B4 0 165 10 4 1888 1128 249 83 30 chr1 170843094 170843430 -26352002 - ORR1E LTR MaLR 0 359 6 4 1888 336 252 20 29 chr1 170843637 170843739 -26351693 + GA-rich Low_complexity Low_complexity 3 103 0 4 1888 423 292 207 38 chr1 170844476 170845084 -26350348 + L1M4 LINE L1 3320 4030 -2116 4 1888 340 311 67 24 chr1 170845173 170845338 -26350094 + L1M4 LINE L1 5009 5180 -966 4 1888 508 309 134 15 chr1 170845384 170845827 -26349605 + L1M4 LINE L1 5263 5760 -420 4 1888 189 118 59 0 chr1 170845851 170845902 -26349530 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1888 432 284 100 8 chr1 170846095 170846238 -26349194 + B3A SINE B2 9 163 -53 4 1888 519 31 0 0 chr1 170846238 170846303 -26349129 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1888 308 325 88 24 chr1 170846303 170846329 -26349103 + B3 SINE B2 164 189 -27 4 1888 21 0 0 0 chr1 170846335 170846356 -26349076 + AT_rich Low_complexity Low_complexity 1 21 0 4 1888 1836 290 44 14 chr1 170846863 170847634 -26347798 + Lx6 LINE L1 6483 7460 0 4 1888 710 132 355 0 chr1 170847912 170848078 -26347354 - URR1A DNA MER1_type -1 225 1 4 1888 1254 201 148 59 chr1 170849579 170850057 -26345375 + RMER4B LTR ERVK 17 574 -11 4 1888 192 302 23 101 chr1 170851251 170851380 -26344052 - MIR SINE MIR 0 262 144 5 1888 912 258 45 128 chr1 170851381 170851749 -26343683 + ORR1E LTR MaLR 4 379 0 5 1888 234 148 0 0 chr1 170855770 170855824 -26339608 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1888 3676 223 33 15 chr1 170855892 170856683 -26338749 - Lx6 LINE L1 -174 7286 6482 5 1888 33057 123 9 7 chr1 170856728 170858151 -26337281 + Lx6 LINE L1 634 1970 -3916 5 1888 183 42 0 0 chr1 170858151 170858175 -26337257 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1888 33057 83 9 1 chr1 170858175 170861786 -26333646 + Lx6 LINE L1 1971 5591 -295 5 1888 7576 63 11 2 chr1 170861786 170862760 -26332672 + L1Md_F2 LINE L1 5588 6570 -12 5 1888 33057 111 32 10 chr1 170862760 170863032 -26332400 + Lx6 LINE L1 5592 5904 -1559 5 1888 230 81 27 0 chr1 170863032 170863069 -26332363 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1888 2748 226 129 45 chr1 170863069 170863623 -26331809 + Lx6 LINE L1 5905 6487 -976 5 1888 202 414 22 29 chr1 170864446 170864583 -26330849 - L2 LINE L2 -1854 1565 1430 5 1888 24 32 0 0 chr1 170867398 170867429 -26328003 + AT_rich Low_complexity Low_complexity 1 31 0 5 1888 333 279 68 0 chr1 170867666 170867813 -26327619 + L1M4c LINE L1 1506 1662 -5672 5 1888 911 301 51 42 chr1 170867848 170868416 -26327016 + L1M4c LINE L1 1898 2470 -4538 5 1888 1341 284 120 54 chr1 170868410 170868801 -26326631 + L1M4c LINE L1 3424 3818 -3182 5 1888 566 368 29 25 chr1 170868801 170869080 -26326352 + B4 SINE B4 1 280 -12 5 1888 1341 284 120 54 chr1 170869080 170869120 -26326312 + L1M4c LINE L1 3819 3883 -3117 5 1888 486 49 0 0 chr1 170869120 170869181 -26326251 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1888 285 29 0 0 chr1 170869182 170869216 -26326216 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1888 1341 284 120 54 chr1 170869216 170869331 -26326101 + L1M4c LINE L1 3884 4015 -2985 5 1888 6284 92 32 12 chr1 170869331 170870239 -26325193 + Lx3_Mus LINE L1 6075 7000 -9 5 1888 1341 284 120 54 chr1 170870239 170871051 -26324381 + L1M4c LINE L1 4016 4877 -2123 5 1888 37 39 0 0 chr1 170871091 170871142 -26324290 + AT_rich Low_complexity Low_complexity 1 51 0 5 1888 1217 185 73 44 chr1 170871329 170871645 -26323787 - Lx7 LINE L1 0 7696 7372 5 1888 736 251 199 5 chr1 170871648 170871864 -26323568 - Lx6 LINE L1 -482 6978 6721 5 1888 303 312 118 0 chr1 170871869 170871962 -26323470 - Lx8 LINE L1 -241 7232 7129 5 1888 249 254 34 0 chr1 170872101 170872160 -26323272 + L1_Mur3 LINE L1 5384 5444 -436 5 1888 204 111 56 0 chr1 170872160 170872214 -26323218 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1888 416 254 23 17 chr1 170872214 170872384 -26323048 + L1_Rod LINE L1 5428 5619 -681 5 1888 561 288 48 94 chr1 170872733 170872855 -26322577 + L1M4c LINE L1 5823 5918 -1088 5 1888 607 284 19 13 chr1 170872855 170873012 -26322420 - RSINE1 SINE B4 -4 161 4 5 1888 561 281 66 71 chr1 170873012 170873571 -26321861 + L1M4c LINE L1 5919 6482 -562 5 1888 438 316 51 6 chr1 170873572 170873747 -26321685 + MLT2B1 LTR ERVL 6 188 -332 5 1888 248 352 60 60 chr1 170873884 170874035 -26321397 + MLT2B1 LTR ERVL 347 497 -59 5 1888 192 263 0 0 chr1 170874036 170874112 -26321320 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1888 423 381 39 3 chr1 170874143 170874425 -26321007 + ERVL-B4-int LTR ERVL 330 621 -5093 5 1888 439 311 76 40 chr1 170874728 170874926 -26320506 - ORR1E LTR MaLR -148 211 7 5 1888 2228 297 93 30 chr1 170874932 170875268 -26320164 + ERVL-B4-int LTR ERVL 1774 2140 -3574 5 1888 1233 0 0 0 chr1 170875268 170875405 -26320027 + (GGGAGA)n Simple_repeat Simple_repeat 2 138 0 5 1888 2228 297 93 30 chr1 170875405 170876141 -26319291 + ERVL-B4-int LTR ERVL 2141 2913 -2801 5 1888 270 0 0 0 chr1 170876141 170876171 -26319261 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1888 2228 297 93 30 chr1 170876171 170876215 -26319217 + ERVL-B4-int LTR ERVL 2914 2962 -2752 5 1888 430 352 50 18 chr1 170876543 170876821 -26318611 + ERVL-B4-int LTR ERVL 3543 3829 -1885 5 1888 279 350 26 0 chr1 170876945 170877062 -26318370 + ERVL-B4-int LTR ERVL 4012 4131 -1583 5 1888 194 0 39 0 chr1 170877525 170877551 -26317881 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1888 1099 62 7 7 chr1 170877553 170877700 -26317732 - B1_Mm SINE Alu 0 147 1 5 1888 513 0 0 0 chr1 170877877 170877934 -26317498 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1888 375 314 57 8 chr1 170878594 170878716 -26316716 + MLT1A0 LTR MaLR 4 131 -234 5 1888 420 337 62 41 chr1 170878861 170879056 -26316376 + MLT1A0 LTR MaLR 167 365 0 5 1888 235 344 80 80 chr1 170880751 170880963 -26314469 - B3 SINE B2 -3 213 2 5 1888 6052 163 43 13 chr1 170881959 170883123 -26312309 - Lx3C LINE L1 -2 6974 5776 5 1888 1399 276 63 126 chr1 170883494 170884360 -26311072 - L1_Rod LINE L1 -3233 2647 1840 5 1888 5403 140 18 6 chr1 170884360 170885236 -26310196 - Lx LINE L1 -9 6645 5759 5 1888 1399 276 63 126 chr1 170885236 170885659 -26309773 - L1_Rod LINE L1 -4041 1839 1445 5 1888 351 0 0 0 chr1 170885659 170885698 -26309734 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1888 1399 276 60 109 chr1 170885698 170885959 -26309473 - L1_Rod LINE L1 -4436 1444 1183 5 1888 12341 92 11 29 chr1 170885991 170886396 -26309036 + Lx LINE L1 1107 1508 -2406 5 1888 1050 83 0 0 chr1 170886396 170886529 -26308903 + B1_Mus1 SINE Alu 2 134 -14 5 1888 14679 135 43 44 chr1 170886529 170891441 -26303991 + Lx LINE L1 1508 6555 -99 5 1888 909 289 99 37 chr1 170891426 170891993 -26303439 - L1MA8 LINE L1 -306 5985 5384 5 1888 605 314 115 49 chr1 170891980 170892596 -26302836 - L1MC3 LINE L1 -107 7678 7022 5 1888 375 78 0 0 chr1 170893167 170893218 -26302214 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1888 646 306 17 40 chr1 170893218 170893395 -26302037 - B3 SINE B2 -29 187 15 5 1888 282 298 41 148 chr1 170893524 170893646 -26301786 - RLTR25A LTR ERVK -994 109 1 5 1888 21 36 0 0 chr1 170893860 170893888 -26301544 + AT_rich Low_complexity Low_complexity 1 28 0 5 1888 429 54 0 0 chr1 170895139 170895195 -26300237 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1888 226 250 12 95 chr1 170895736 170895820 -26299612 - MIR SINE MIR -117 145 69 5 1888 588 53 0 0 chr1 170895857 170895933 -26299499 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1888 691 140 12 12 chr1 170895928 170896094 -26299338 + (CAGAGA)n Simple_repeat Simple_repeat 6 171 0 5 1888 189 211 0 0 chr1 170896099 170896151 -26299281 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1888 205 307 91 38 chr1 170896161 170896293 -26299139 - MIR SINE MIR -58 204 66 5 1888 295 300 9 83 chr1 170897241 170897350 -26298082 + B1F1 SINE Alu 3 103 -46 5 1888 231 312 71 90 chr1 170897684 170897839 -26297593 + MLT1H LTR MaLR 398 549 0 5 1888 283 357 62 0 chr1 170897983 170898112 -26297320 - L2 LINE L2 -1676 1743 1607 5 1888 720 316 28 19 chr1 170898112 170898325 -26297107 + B4A SINE B4 2 216 -76 5 1888 1247 177 132 3 chr1 170898325 170898614 -26296818 + Lx3C LINE L1 6649 6974 -2 5 1888 224 161 0 16 chr1 170898626 170898689 -26296743 + A-rich Low_complexity Low_complexity 3 64 0 5 1888 339 217 0 16 chr1 170898691 170898752 -26296680 + B4A SINE B4 220 279 -13 5 1888 359 350 91 14 chr1 170898817 170899037 -26296395 - L2 LINE L2 -1787 1632 1396 5 1888 438 88 0 0 chr1 170900163 170900231 -26295201 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1888 267 438 8 23 chr1 170900393 170900614 -26294818 + MIRb SINE MIR 24 244 -24 5 1888 6481 215 65 16 chr1 170901264 170902194 -26293238 - Lx6 LINE L1 -4 7456 6490 5 1888 2790 83 38 15 chr1 170902194 170902585 -26292847 - MTB LTR MaLR 0 400 1 5 1888 6481 215 65 16 chr1 170902585 170903150 -26292282 - Lx6 LINE L1 -971 6489 5888 5 1888 324 0 0 0 chr1 170904070 170904106 -26291326 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 5 1888 278 366 123 46 chr1 170904783 170905173 -26290259 + L2c LINE L2 2948 3367 -20 5 1888 182 349 36 0 chr1 170905892 170905975 -26289457 + L2 LINE L2 2689 2774 -645 5 1888 295 349 0 0 chr1 170906264 170906330 -26289102 + MLT1M LTR MaLR 120 185 -487 5 1888 841 215 138 11 chr1 170906341 170906529 -26288903 + B3 SINE B2 5 216 0 5 1888 210 294 38 9 chr1 170906958 170907037 -26288395 - MIR SINE MIR 0 262 189 5 1888 233 395 64 33 chr1 170907105 170907353 -26288079 + L2 LINE L2 2727 2982 -437 5 1888 1339 82 33 0 chr1 170907353 170907536 -26287896 - B2_Mm2 SINE B2 -6 189 1 5 1888 233 395 64 33 chr1 170907536 170907617 -26287815 + L2 LINE L2 2983 3066 -353 5 1888 246 279 107 9 chr1 170907810 170907922 -26287510 + MER33 DNA MER1_type 200 322 -2 5 1888 453 110 0 0 chr1 170909014 170909096 -26286336 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1888 375 23 0 0 chr1 170909096 170909139 -26286293 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1888 202 158 0 26 chr1 170909220 170909259 -26286173 + (TAA)n Simple_repeat Simple_repeat 2 39 0 5 1888 973 293 56 16 chr1 170909470 170909775 -26285657 + MTE2a LTR MaLR 63 379 0 5 1888 342 115 0 0 chr1 170910349 170910401 -26285031 + (GGGGA)n Simple_repeat Simple_repeat 4 55 0 5 1888 1365 314 95 32 chr1 170911127 170911820 -26283612 - LTR82A LTR ERVL -3 869 133 5 29 36166 16 1 7 chr1 170913541 170918887 -26276545 + L1Md_A LINE L1 275 5586 -297 5 1889 8745 18 0 0 chr1 170918887 170919881 -26275551 + L1Md_A LINE L1 5587 6580 -2 5 1889 214 317 98 0 chr1 170919967 170920049 -26275383 + L2a LINE L2 2706 2795 -624 5 1889 266 342 88 32 chr1 170920267 170920480 -26274952 + L2a LINE L2 3140 3425 -1 5 1889 258 105 0 0 chr1 170921477 170921515 -26273917 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1889 394 274 0 0 chr1 170923103 170923187 -26272245 + B1_Mur2 SINE Alu 30 113 -36 5 1889 1350 295 74 51 chr1 170923365 170923377 -26272055 - Lx9 LINE L1 -176 7468 7458 5 1889 459 0 0 0 chr1 170923377 170923428 -26272004 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1889 1350 295 74 51 chr1 170923428 170924157 -26271275 - Lx9 LINE L1 -187 7457 6710 5 1889 1351 62 0 0 chr1 170924198 170924376 -26271056 + L1_Mus4 LINE L1 6127 6304 -332 5 1889 225 211 35 0 chr1 170924491 170924548 -26270884 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 5 1889 692 277 64 4 chr1 170924563 170924799 -26270633 + Lx8 LINE L1 6221 6470 -1003 5 1889 421 324 140 19 chr1 170924863 170925335 -26270097 + L1ME2 LINE L1 5597 6125 -39 5 1889 180 0 0 0 chr1 170925356 170925376 -26270056 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 5 1889 1084 102 23 0 chr1 170926995 170927171 -26268261 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 5 1889 627 48 0 0 chr1 170928532 170928615 -26266817 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1889 876 44 9 0 chr1 170928664 170928777 -26266655 - B1_Mm SINE Alu -1 146 33 5 1889 323 250 75 130 chr1 170928705 170928866 -26266566 - RLTR25B LTR ERVK -519 509 358 5 1889 3266 23 5 3 chr1 170929308 170929696 -26265736 - L1Md_F3 LINE L1 -2 6582 6194 5 1889 1137 275 87 32 chr1 170929774 170930010 -26265422 - Lx8 LINE L1 -218 7255 7003 5 1889 186 43 0 0 chr1 170930010 170930033 -26265399 + (TCC)n Simple_repeat Simple_repeat 2 24 0 5 1889 1137 275 87 32 chr1 170930033 170930232 -26265200 - Lx8 LINE L1 -471 7002 6796 5 1889 464 269 0 0 chr1 170930635 170930743 -26264689 + PB1D10 SINE Alu 5 112 -5 5 1889 315 324 67 33 chr1 170930754 170930904 -26264528 + HAL1-3A_ME LINE L1 2284 2438 -420 5 1889 256 312 104 0 chr1 170931606 170931702 -26263730 + B4A SINE B4 2 107 -185 5 1889 501 17 0 0 chr1 170931721 170931779 -26263653 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1889 1115 70 13 0 chr1 170932627 170932784 -26262648 + (TAGA)n Simple_repeat Simple_repeat 2 160 0 5 1889 311 51 0 0 chr1 170934183 170934222 -26261210 + tRNA-Arg-AGA tRNA tRNA 1 39 -37 6 1889 446 354 102 4 chr1 170934491 170934755 -26260677 - MER20B DNA MER1_type -193 590 301 6 1889 40 73 0 0 chr1 170935594 170935676 -26259756 + AT_rich Low_complexity Low_complexity 1 82 0 6 1889 272 314 150 23 chr1 170935977 170936150 -26259282 - FordPrefect DNA Tip100 -524 1159 965 6 1889 674 377 36 7 chr1 170936184 170936462 -26258970 - B4 SINE B4 -2 290 5 6 1889 283 309 20 20 chr1 170936898 170936997 -26258435 + MLT1C LTR MaLR 361 459 -8 6 1889 222 150 0 0 chr1 170937027 170937067 -26258365 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1889 255 407 105 5 chr1 170937225 170937425 -26258007 - FordPrefect DNA Tip100 -1046 637 418 6 1889 309 89 0 0 chr1 170937723 170937768 -26257664 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1889 485 32 16 0 chr1 170939143 170939206 -26256226 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1889 189 74 0 0 chr1 170940325 170940352 -26255080 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1889 240 343 53 90 chr1 170940666 170940855 -26254577 + MLT1A1 LTR MaLR 26 207 -201 6 1889 239 224 25 40 chr1 170940934 170941023 -26254409 + MTEb LTR MaLR 293 379 0 6 1889 309 319 48 55 chr1 170941137 170941283 -26254149 - MLT1N2 LTR MaLR -415 147 3 6 1889 2642 231 48 16 chr1 170941370 170942064 -26253368 + Lx2B LINE L1 6274 6989 -11 6 1889 280 408 41 8 chr1 170942102 170942223 -26253209 - RSINE1 SINE B4 -36 129 5 6 1889 264 149 0 0 chr1 170942246 170942293 -26253139 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1889 381 22 0 0 chr1 170943468 170943514 -26251918 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1889 528 16 0 0 chr1 170943514 170943574 -26251858 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1889 903 240 28 18 chr1 170943673 170943899 -26251533 + B3 SINE B2 1 198 0 6 1889 567 40 0 0 chr1 170943938 170944012 -26251420 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1889 243 0 0 0 chr1 170944015 170944042 -26251390 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1889 630 0 0 0 chr1 170944431 170944501 -26250931 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1889 490 297 60 19 chr1 170944890 170945106 -26250326 + MLT2B1 LTR ERVL 15 239 -281 6 1889 270 56 0 0 chr1 170945129 170945165 -26250267 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 6 1889 1031 59 0 81 chr1 170945165 170945313 -26250119 - B1_Mus2 SINE Alu -11 136 1 6 1889 384 336 34 20 chr1 170945313 170945459 -26249973 + MLT2B1 LTR ERVL 373 520 -42 6 1889 357 62 0 0 chr1 170945510 170945558 -26249874 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1889 390 370 32 53 chr1 170947113 170947398 -26248034 - L1M5 LINE L1 -478 5695 5417 6 1889 1511 229 66 3 chr1 170947510 170947843 -26247589 - MTD LTR MaLR -5 414 61 6 1889 603 0 0 0 chr1 170947960 170948027 -26247405 + (TTTTG)n Simple_repeat Simple_repeat 3 69 0 6 1889 384 380 50 32 chr1 170948243 170948463 -26246969 - L1MEg LINE L1 -5837 247 24 6 1889 21 0 0 0 chr1 170948485 170948506 -26246926 + AT_rich Low_complexity Low_complexity 1 21 0 6 1889 300 310 167 109 chr1 170949047 170949322 -26246110 + B4A SINE B4 2 292 0 6 1889 180 346 134 25 chr1 170949961 170950118 -26245314 - MIR SINE MIR -36 226 53 6 1889 279 337 33 22 chr1 170950233 170950324 -26245108 + B1F1 SINE Alu 3 94 -55 6 1889 212 154 26 0 chr1 170950579 170950618 -26244814 + L2 LINE L2 2820 2859 -560 6 1889 302 284 14 0 chr1 170950809 170950883 -26244549 + ID2 SINE ID 2 76 -7 6 1889 291 114 0 0 chr1 170950886 170950930 -26244502 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 1889 1173 229 89 37 chr1 170951308 170951657 -26243775 - ORR1D2 LTR MaLR -2 368 2 6 1889 539 307 151 23 chr1 170952069 170952586 -26242846 - L1M4 LINE L1 -1330 4816 4234 6 1889 351 0 0 0 chr1 170952597 170952636 -26242796 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1889 364 364 8 32 chr1 170952694 170952819 -26242613 - RSINE1 SINE B4 -12 153 32 6 1889 498 17 0 0 chr1 170953014 170953073 -26242359 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1889 294 29 0 0 chr1 170955233 170955268 -26240164 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1889 303 87 0 42 chr1 170955495 170955567 -26239865 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 6 1889 567 43 0 0 chr1 170955710 170955780 -26239652 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1889 699 316 6 48 chr1 170955944 170956276 -26239156 - Lx8 LINE L1 -74 7399 7082 6 1889 1761 286 49 9 chr1 170956442 170957014 -26238418 + Lx8 LINE L1 6428 7022 -451 6 1889 500 165 9 0 chr1 170957124 170957239 -26238193 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 6 1889 276 324 96 7 chr1 170957514 170957660 -26237772 - MIRc SINE MIR -88 180 22 6 1889 479 331 80 0 chr1 170958990 170959165 -26236267 + B3 SINE B2 3 191 -25 6 1889 228 67 0 0 chr1 170959406 170959436 -26235996 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1889 210 143 0 0 chr1 170959436 170959471 -26235961 + (CATA)n Simple_repeat Simple_repeat 1 35 0 6 1889 335 322 39 29 chr1 170960505 170960642 -26234790 + LTR33A_ LTR ERVL 354 529 -2 6 1889 1270 229 68 51 chr1 170961158 170961336 -26234096 - ORR1C1 LTR MaLR -17 361 180 6 1889 960 128 0 0 chr1 170961336 170961515 -26233917 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1889 1270 229 68 51 chr1 170961515 170961691 -26233741 - ORR1C1 LTR MaLR -199 179 1 6 1889 581 278 96 103 chr1 170962416 170962697 -26232735 + B4A SINE B4 4 282 -10 6 1889 398 53 18 0 chr1 170962702 170962759 -26232673 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1889 180 0 0 0 chr1 170963061 170963081 -26232351 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1889 786 48 0 0 chr1 170963324 170963427 -26232005 + (TC)n Simple_repeat Simple_repeat 1 103 0 6 1889 207 0 0 0 chr1 170963427 170963449 -26231983 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1889 802 322 9 0 chr1 170963641 170963855 -26231577 + ORR1E LTR MaLR 24 239 -120 6 1889 712 218 67 23 chr1 170963903 170964090 -26231342 + MTEa LTR MaLR 160 377 -2 6 1889 221 38 73 36 chr1 170964243 170964298 -26231134 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 6 1889 1121 77 7 0 chr1 170964304 170964447 -26230985 - B1_Mus2 SINE Alu -1 146 3 6 1889 1276 148 55 0 chr1 170964818 170965055 -26230377 - L1_Mus4 LINE L1 -4 6632 6383 6 1889 378 0 0 0 chr1 170966263 170966305 -26229127 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1889 448 294 66 75 chr1 170967290 170967503 -26227929 + MER58A DNA MER1_type 14 224 0 6 1889 947 349 84 22 chr1 170968952 170969441 -26225991 - Tigger8 DNA MER2_type -95 571 53 6 1889 22 0 0 0 chr1 170969517 170969539 -26225893 + AT_rich Low_complexity Low_complexity 1 22 0 6 1889 326 351 92 42 chr1 170969539 170969777 -26225655 - MIRb SINE MIR -17 251 2 6 1889 477 280 90 35 chr1 170970209 170970409 -26225023 - ID_B1 SINE B4 -13 211 1 6 1889 1093 147 97 56 chr1 170971928 170972144 -26223288 + URR1A DNA MER1_type 2 226 0 6 1889 891 94 0 0 chr1 170972207 170972334 -26223098 + (CGATA)n Simple_repeat Simple_repeat 3 129 0 6 1889 835 249 14 19 chr1 170973511 170973724 -26221708 - B3 SINE B2 -4 212 1 6 1889 253 387 14 49 chr1 170974010 170974154 -26221278 + MER5B DNA MER1_type 33 171 -7 6 1889 387 0 0 0 chr1 170975025 170975068 -26220364 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1889 298 279 126 11 chr1 170975633 170975720 -26219712 + MIRm SINE MIR 174 270 -6 6 1889 2796 106 0 40 chr1 170975920 170976344 -26219088 + MTB_Mm LTR MaLR 1 407 0 6 1889 881 213 38 28 chr1 170976570 170976783 -26218649 - B3 SINE B2 0 216 2 6 1889 1445 206 88 10 chr1 170977463 170977757 -26217675 - MTC LTR MaLR -65 356 40 6 1889 712 321 9 31 chr1 170977784 170978012 -26217420 + B4 SINE B4 46 268 -24 6 1889 396 270 141 25 chr1 170978691 170978854 -26216578 + MER2 DNA MER2_type 11 192 -153 6 1889 225 304 12 81 chr1 170978860 170978946 -26216486 + RSINE1 SINE B4 2 81 -84 6 1889 362 204 56 11 chr1 170979155 170979244 -26216188 + HAL1-3A_ME LINE L1 1969 2061 -797 6 1889 2715 31 3 3 chr1 170979318 170979644 -26215788 - L1_Mus1 LINE L1 -1 6566 6241 6 1889 1116 131 57 0 chr1 170979682 170979857 -26215575 + B2_Mm2 SINE B2 2 186 -9 6 1889 443 261 38 101 chr1 170980716 170980925 -26214507 - MTEb LTR MaLR -9 370 175 6 1889 248 242 0 127 chr1 170980928 170980999 -26214433 - MTEb LTR MaLR -309 70 9 6 1889 1060 29 15 0 chr1 170981051 170981187 -26214245 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 6 1889 594 0 0 0 chr1 170981945 170982011 -26213421 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1889 235 327 209 13 chr1 170982565 170982723 -26212709 - MER5A DNA MER1_type 0 189 1 6 1889 428 284 76 131 chr1 170983132 170983327 -26212105 + Charlie13b DNA Charlie 111 302 -210 6 1889 948 240 5 0 chr1 170983327 170983535 -26211897 + B3 SINE B2 2 210 -6 6 1889 428 284 76 131 chr1 170983535 170983614 -26211818 + Charlie13b DNA Charlie 303 370 -142 6 1889 43 0 0 0 chr1 170983636 170983679 -26211753 + AT_rich Low_complexity Low_complexity 1 43 0 6 1889 577 299 29 29 chr1 170985222 170985432 -26210000 - RMER15 LTR ERVL -15 560 351 6 1889 522 305 11 38 chr1 170985553 170985737 -26209695 - MTE2b LTR MaLR 0 379 201 6 1889 636 117 27 14 chr1 170985738 170985886 -26209546 + (CAGAGA)n Simple_repeat Simple_repeat 6 155 0 6 1889 633 265 92 83 chr1 170985886 170985929 -26209503 - MTE2b LTR MaLR -159 220 192 6 1889 3184 31 15 8 chr1 170985929 170986322 -26209110 - MTA_Mm LTR MaLR 0 396 1 6 1889 633 265 92 83 chr1 170986322 170986496 -26208936 - MTE2b LTR MaLR -188 191 1 6 1889 589 116 21 0 chr1 170986770 170986865 -26208567 + Lx2 LINE L1 6882 6978 -19 6 1889 357 354 51 73 chr1 170987910 170988319 -26207113 - HAL1 LINE L1 -947 1560 1161 6 1889 608 298 0 70 chr1 170988337 170988550 -26206882 + B3A SINE B2 1 198 0 6 1889 789 11 0 0 chr1 170989355 170989445 -26205987 + (GA)n Simple_repeat Simple_repeat 1 90 0 7 1889 609 268 218 19 chr1 170990246 170990562 -26204870 + MTEa LTR MaLR 1 379 0 7 1889 273 271 90 83 chr1 170991598 170991731 -26203701 + MER94 DNA AcHobo 1 134 0 7 1889 294 114 28 14 chr1 170991892 170991963 -26203469 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1889 807 285 41 22 chr1 170992025 170992294 -26203138 - B4A SINE B4 -18 274 1 7 1889 520 237 56 50 chr1 170992871 170993031 -26202401 + RSINE1 SINE B4 1 161 -4 7 1889 222 128 0 0 chr1 170993198 170993237 -26202195 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1889 266 141 131 50 chr1 170993325 170993395 -26202037 - PB1D10 SINE Alu 0 149 53 7 1889 414 378 89 49 chr1 170993450 170993998 -26201434 - HAL1 LINE L1 -1512 995 426 7 1889 236 294 32 48 chr1 170994264 170994389 -26201043 - HAL1 LINE L1 -2384 123 1 7 1889 1573 209 42 61 chr1 170994728 170994748 -26200684 + MTD LTR MaLR 1 20 -399 7 1889 558 29 0 0 chr1 170994748 170994816 -26200616 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1889 1573 209 42 61 chr1 170994816 170995222 -26200210 + MTD LTR MaLR 21 418 -1 7 1889 3324 231 80 60 chr1 170995242 170996302 -26199130 + MTC-int LTR MaLR 42 1256 -2 7 1889 276 216 27 0 chr1 170997412 170997486 -26197946 + (TCTG)n Simple_repeat Simple_repeat 1 76 0 7 1889 213 277 0 0 chr1 170997470 170997517 -26197915 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1889 210 326 65 0 chr1 170997930 170998036 -26197396 + MIR SINE MIR 90 200 -68 7 1889 21 0 0 0 chr1 170998220 170998241 -26197191 + AT_rich Low_complexity Low_complexity 1 21 0 7 1889 297 51 0 0 chr1 170998468 170998507 -26196925 + (GAAAA)n Simple_repeat Simple_repeat 1 39 0 7 1889 254 376 38 13 chr1 170999021 170999180 -26196252 + MLT1D LTR MaLR 343 505 0 7 1889 541 303 23 0 chr1 171000264 171000439 -26194993 + B3A SINE B2 5 183 -15 1 1889 396 0 0 0 chr1 171000442 171000486 -26194946 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1889 447 68 0 0 chr1 171002687 171002746 -26192686 + (GGA)n Simple_repeat Simple_repeat 3 61 0 3 1889 2187 197 47 17 chr1 171002917 171003326 -26192106 - MTC LTR MaLR 0 421 1 4 1889 588 329 19 128 chr1 171003565 171003941 -26191491 - MTEa LTR MaLR -36 343 9 5 1889 259 369 10 0 chr1 171004214 171004317 -26191115 + PB1D10 SINE Alu 3 106 -11 6 1889 707 279 103 37 chr1 171005274 171005546 -26189886 + B4A SINE B4 1 290 -2 7 1889 207 114 0 0 chr1 171007184 171007219 -26188213 + (TTG)n Simple_repeat Simple_repeat 3 37 0 8 1889 212 211 0 21 chr1 171007480 171007577 -26187855 + T-rich Low_complexity Low_complexity 2 96 0 9 1889 363 44 0 0 chr1 171008055 171008100 -26187332 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1889 391 240 149 37 chr1 171008118 171008252 -26187180 - B3A SINE B2 -45 153 5 1 1889 199 50 0 70 chr1 171008674 171008717 -26186715 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1889 807 57 0 0 chr1 171009877 171009982 -26185450 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 1 1889 486 0 0 0 chr1 171010001 171010055 -26185377 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1889 959 313 63 29 chr1 171010802 171011151 -26184281 + MTEb LTR MaLR 12 372 -7 1 1889 346 176 395 5 chr1 171011458 171011559 -26183873 + Lx9 LINE L1 7345 7477 -167 1 1889 180 0 0 0 chr1 171011559 171011579 -26183853 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1889 346 176 395 5 chr1 171011579 171011677 -26183755 + Lx9 LINE L1 7478 7621 -23 1 1889 234 343 15 0 chr1 171012359 171012493 -26182939 + L1MD3 LINE L1 7834 7969 -26 1 1889 928 308 47 14 chr1 171012848 171013125 -26182307 - B4 SINE B4 -1 291 6 1 1889 254 235 57 38 chr1 171013718 171013824 -26181608 - RLTR13A3 LTR ERVK -742 236 129 2 1889 217 384 32 8 chr1 171014494 171014620 -26180812 - MIRb SINE MIR -121 147 19 2 1889 889 202 126 5 chr1 171014687 171014886 -26180546 - URR1A DNA MER1_type -2 224 2 2 1889 416 202 0 0 chr1 171015263 171015342 -26180090 + URR1B DNA MER1_type 144 222 -3 2 1889 22 111 0 0 chr1 171016016 171016115 -26179317 + AT_rich Low_complexity Low_complexity 1 99 0 2 1889 380 280 54 49 chr1 171017012 171017159 -26178273 - ID_B1 SINE B4 -60 232 84 2 1889 992 297 68 27 chr1 171018053 171018316 -26177116 - B4 SINE B4 -17 275 2 2 1889 249 190 0 33 chr1 171018316 171018376 -26177056 + T-rich Low_complexity Low_complexity 5 62 0 2 1889 262 329 29 0 chr1 171018436 171018506 -26176926 - RSINE1 SINE B4 -20 145 74 2 1889 226 263 17 17 chr1 171018522 171018580 -26176852 - B4 SINE B4 -222 70 13 2 1889 479 299 0 0 chr1 171018624 171018731 -26176701 - ID_B1 SINE B4 -15 209 103 2 1889 546 98 0 0 chr1 171020979 171021061 -26174371 + (TATG)n Simple_repeat Simple_repeat 1 82 0 3 1889 1629 40 0 0 chr1 171021733 171021932 -26173500 + L1Md_F2 LINE L1 5387 5585 -298 3 1889 8030 50 0 12 chr1 171021933 171021994 -26173438 + L1Md_F2 LINE L1 5587 5646 -936 3 1889 3070 39 3 0 chr1 171021994 171022350 -26173082 + IAPEY2_LTR LTR ERVK 1 357 0 3 1889 8030 50 0 12 chr1 171022350 171023296 -26172136 + L1Md_F2 LINE L1 5647 6582 0 3 1889 272 94 0 19 chr1 171023451 171023505 -26171927 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 3 1889 254 305 73 12 chr1 171024863 171024975 -26170457 + MIRm SINE MIR 68 181 -95 3 1889 189 327 67 86 chr1 171025229 171025454 -26169978 + MIR SINE MIR 19 229 -39 3 1889 234 278 68 27 chr1 171026142 171026216 -26169216 - B1_Mur1 SINE Alu -3 146 70 3 1889 28 0 0 0 chr1 171026547 171026575 -26168857 + AT_rich Low_complexity Low_complexity 1 28 0 3 1889 239 342 150 0 chr1 171028506 171028626 -26166806 - MLT1G3 LTR MaLR -301 294 157 3 1889 507 330 25 83 chr1 171029462 171029789 -26165643 - MLT1I LTR MaLR -62 349 42 3 1889 899 256 59 20 chr1 171030023 171030226 -26165206 - B3 SINE B2 0 216 6 4 1889 6274 87 11 2 chr1 171030239 171031182 -26164250 - L1Md_F2 LINE L1 0 6582 5654 4 1889 355 239 200 9 chr1 171031210 171031320 -26164112 - MER2 DNA MER2_type -94 251 121 4 1889 335 284 135 138 chr1 171031357 171031564 -26163868 - ORR1E LTR MaLR 0 359 183 4 1889 1012 38 8 8 chr1 171031564 171031698 -26163734 + (GGAGA)n Simple_repeat Simple_repeat 2 135 0 4 1889 335 284 135 138 chr1 171031698 171031772 -26163660 - ORR1E LTR MaLR -177 182 79 4 1889 1032 8 0 0 chr1 171032768 171032885 -26162547 + (TC)n Simple_repeat Simple_repeat 2 118 0 4 1889 216 143 0 0 chr1 171032885 171032927 -26162505 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1889 485 286 64 13 chr1 171034121 171034277 -26161155 - MIRb SINE MIR -1 267 104 4 1889 369 0 0 0 chr1 171034545 171034586 -26160846 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1889 36 40 0 0 chr1 171036573 171036623 -26158809 + AT_rich Low_complexity Low_complexity 1 50 0 4 1889 189 132 45 136 chr1 171037130 171037174 -26158258 - L3 LINE CR1 -100 4389 4350 5 1889 39261 6 1 0 chr1 171037377 171043533 -26151899 - L1Md_A LINE L1 0 6582 423 5 1889 522 83 0 0 chr1 171043714 171043786 -26151646 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1889 814 259 0 44 chr1 171043980 171044186 -26151246 - B3A SINE B2 0 198 2 5 1889 189 0 0 0 chr1 171044370 171044391 -26151041 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1889 537 343 72 60 chr1 171045144 171045479 -26149953 - MLT1M LTR MaLR -318 354 16 5 1889 608 331 74 88 chr1 171045622 171045999 -26149433 - MTE2b LTR MaLR 0 379 8 5 1889 36 40 0 0 chr1 171046639 171046689 -26148743 + AT_rich Low_complexity Low_complexity 1 50 0 5 1889 843 259 138 26 chr1 171046877 171047254 -26148178 - MTD LTR MaLR 0 419 1 5 1889 248 314 61 43 chr1 171047675 171047838 -26147594 + MIR SINE MIR 95 260 -2 5 1889 34 42 0 0 chr1 171048447 171048495 -26146937 + AT_rich Low_complexity Low_complexity 1 48 0 6 1890 211 348 67 72 chr1 171049294 171049489 -26145943 + L2c LINE L2 3133 3326 -61 6 1890 487 331 79 44 chr1 171050869 171051045 -26144387 + Lx8 LINE L1 6530 6702 -771 6 1890 513 0 0 0 chr1 171051045 171051102 -26144330 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 6 1890 487 331 79 44 chr1 171051102 171051139 -26144293 + Lx8 LINE L1 6703 6740 -733 6 1890 513 0 0 0 chr1 171051139 171051196 -26144236 + (CTA)n Simple_repeat Simple_repeat 1 57 0 6 1890 487 303 245 32 chr1 171051196 171051499 -26143933 + Lx8 LINE L1 6741 7119 -354 6 1890 29 28 0 0 chr1 171053625 171053661 -26141771 + AT_rich Low_complexity Low_complexity 1 36 0 6 1890 432 55 0 0 chr1 171054256 171054311 -26141121 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1890 600 40 0 0 chr1 171054311 171054385 -26141047 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1890 585 320 0 13 chr1 171054454 171054603 -26140829 + B3A SINE B2 1 147 -51 6 1890 342 0 0 0 chr1 171054615 171054653 -26140779 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1890 270 0 0 0 chr1 171054653 171054682 -26140750 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1890 330 26 0 0 chr1 171054714 171054753 -26140679 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1890 2750 48 51 0 chr1 171054855 171055210 -26140222 + L1Md_F2 LINE L1 6209 6581 -1 7 1890 330 67 0 0 chr1 171055313 171055358 -26140074 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1890 186 133 0 0 chr1 171057142 171057172 -26138260 + (TATG)n Simple_repeat Simple_repeat 1 30 0 7 1890 334 306 0 0 chr1 171057208 171057280 -26138152 - ID4 SINE ID -10 73 2 7 1890 386 319 90 61 chr1 171057460 171057837 -26137595 + L1MC5 LINE L1 7268 7655 -306 7 1890 351 0 0 0 chr1 171057996 171058035 -26137397 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1890 1233 307 96 42 chr1 171058060 171058560 -26136872 - Tigger7 DNA MER2_type -1941 550 24 7 1890 628 297 26 5 chr1 171058804 171058997 -26136435 + B3A SINE B2 2 198 0 7 1890 253 176 44 0 chr1 171061111 171061179 -26134253 + GA-rich Low_complexity Low_complexity 3 73 0 8 1890 946 296 37 53 chr1 171061883 171062183 -26133249 + ORR1E LTR MaLR 39 333 -26 8 1890 226 200 0 0 chr1 171062988 171063028 -26132404 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1890 265 301 87 0 chr1 171063064 171063167 -26132265 - L1_Rod LINE L1 -16 5831 5720 8 1890 2240 148 21 43 chr1 171064039 171064414 -26131018 + ORR1B2 LTR MaLR 1 367 0 8 1890 292 296 24 44 chr1 171066495 171066593 -26128839 + MLT1E1 LTR MaLR 20 115 -445 8 1890 361 219 0 14 chr1 171066742 171066816 -26128616 + BC1_Mm scRNA scRNA 5 77 -75 8 1890 638 75 11 0 chr1 171066816 171066909 -26128523 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 8 1890 576 304 52 48 chr1 171066917 171067166 -26128266 + MLT1E1 LTR MaLR 405 654 0 8 1890 279 327 103 18 chr1 171067619 171067784 -26127648 - MLT1E2 LTR MaLR -2 503 325 8 1890 308 286 7 90 chr1 171067873 171068030 -26127402 - MLT1E2 LTR MaLR -303 202 60 8 1890 626 312 0 0 chr1 171068059 171068197 -26127235 + RSINE1 SINE B4 11 148 -17 8 1890 387 0 0 0 chr1 171068205 171068248 -26127184 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1890 477 0 0 0 chr1 171068248 171068300 -26127132 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1890 273 333 23 0 chr1 171070679 171070766 -26124666 + B3A SINE B2 1 89 -109 9 1890 405 0 0 0 chr1 171070780 171070825 -26124607 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1890 1023 148 35 23 chr1 171070830 171071003 -26124429 - B2_Mm2 SINE B2 -19 176 2 9 1890 3541 10 0 0 chr1 171071028 171071417 -26124015 + L1Md_A LINE L1 5198 5586 -297 9 1890 9595 4 0 0 chr1 171071417 171072413 -26123019 + L1Md_A LINE L1 5587 6582 0 9 1890 25 31 0 0 chr1 171072639 171072671 -26122761 + AT_rich Low_complexity Low_complexity 1 32 0 9 1890 333 218 55 44 chr1 171072739 171072830 -26122602 - B4A SINE B4 -10 282 191 9 1890 251 312 92 20 chr1 171072790 171072888 -26122544 - PB1D9 SINE Alu 0 120 16 9 1890 333 217 14 28 chr1 171073071 171073142 -26122290 + ID4_ SINE ID 1 70 -13 9 1890 1960 220 41 21 chr1 171073828 171074265 -26121167 - ORR1C1-int LTR MaLR -1063 446 1 1 1890 1981 165 28 150 chr1 171074268 171074695 -26120737 - ORR1C1 LTR MaLR -3 375 1 1 1890 489 316 76 30 chr1 171075350 171075680 -26119752 - L1MB8 LINE L1 -9 6169 5825 1 1890 304 341 73 17 chr1 171075682 171075861 -26119571 - RMER15 LTR ERVL -2 573 385 1 1890 497 278 105 31 chr1 171076197 171076520 -26118912 - L1M4 LINE L1 -410 5770 5424 1 1890 556 258 74 16 chr1 171076535 171076774 -26118658 - L1M4 LINE L1 -710 5464 5215 1 1890 312 224 28 120 chr1 171076793 171076935 -26118497 - L1MC LINE L1 -829 5515 5387 1 1890 340 343 22 0 chr1 171077182 171077319 -26118113 + MLT1F-int LTR MaLR 370 509 -980 1 1890 293 218 13 0 chr1 171077564 171077642 -26117790 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1890 495 52 0 3 chr1 171078797 171078867 -26116565 - L1_Mus3 LINE L1 -254 6330 6256 1 1890 429 116 0 0 chr1 171079108 171079177 -26116255 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1890 306 330 60 32 chr1 171079203 171079388 -26116044 - L1MEc LINE L1 -4592 1823 1634 1 1890 309 307 38 32 chr1 171079614 171079772 -26115660 + MTE2a LTR MaLR 1 159 -260 1 1890 507 271 206 33 chr1 171079937 171080151 -26115281 + MTE2a LTR MaLR 127 377 -2 1 1890 614 320 191 27 chr1 171080159 171080791 -26114641 - L1MEc LINE L1 -5099 1301 566 1 1890 5711 116 16 1 chr1 171081362 171082156 -26113276 + Lx2 LINE L1 6180 6985 -12 1 1890 339 164 0 0 chr1 171083507 171083568 -26111864 + T-rich Low_complexity Low_complexity 1 61 0 1 1890 1237 74 0 0 chr1 171083568 171083716 -26111716 - B1_Mus1 SINE Alu 0 148 1 1 1890 1287 85 0 0 chr1 171083774 171083939 -26111493 - L1Md_T LINE L1 0 6582 6418 1 1890 4059 21 3 0 chr1 171083939 171084498 -26110934 + L1Md_T LINE L1 5494 6057 -525 1 1890 1242 100 0 0 chr1 171084628 171084808 -26110624 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1890 405 86 0 0 chr1 171084983 171085041 -26110391 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 1 1890 3098 72 52 0 chr1 171085044 171085445 -26109987 - BGLII_Mus LTR ERVK 0 422 1 1 1890 22 0 0 0 chr1 171085908 171085930 -26109502 + AT_rich Low_complexity Low_complexity 1 22 0 1 1890 642 259 15 89 chr1 171087112 171087315 -26108117 - B3A SINE B2 -6 192 5 1 1890 233 329 12 48 chr1 171087405 171087488 -26107944 - ID4 SINE ID -2 81 2 1 1890 724 308 132 8 chr1 171089086 171089335 -26106097 - MTE2b LTR MaLR -86 293 14 1 1890 194 436 22 11 chr1 171089497 171089680 -26105752 + L2 LINE L2 2659 2843 -576 1 1890 189 107 0 0 chr1 171090365 171090393 -26105039 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1890 477 0 0 0 chr1 171091441 171091494 -26103938 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1890 546 67 0 0 chr1 171091494 171091568 -26103864 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1890 1024 274 166 51 chr1 171092257 171093104 -26102328 + L1MA4A LINE L1 4675 5619 -678 1 1890 953 282 76 129 chr1 171093104 171093499 -26101933 + MTE2a LTR MaLR 1 374 -5 1 1890 672 311 138 32 chr1 171093518 171094082 -26101350 + L1MA4A LINE L1 5638 6261 -42 1 1890 24 0 0 0 chr1 171094190 171094214 -26101218 + AT_rich Low_complexity Low_complexity 1 24 0 1 1890 586 304 67 91 chr1 171094246 171094662 -26100770 - LTR40b LTR ERVL -48 414 9 1 1890 623 321 149 33 chr1 171094878 171094941 -26100491 - Lx8 LINE L1 -80 7393 7331 1 1890 438 65 0 0 chr1 171094941 171095003 -26100429 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 1 1890 623 321 149 33 chr1 171095003 171095361 -26100071 - Lx8 LINE L1 -143 7330 6924 1 1890 272 264 89 42 chr1 171097129 171097250 -26098182 + MTEa LTR MaLR 278 396 -12 1 1890 618 14 0 0 chr1 171097797 171097868 -26097564 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 1 1890 398 272 17 26 chr1 171098814 171098931 -26096501 + ORR1D2 LTR MaLR 203 318 -52 1 1890 354 228 13 6 chr1 171098941 171099100 -26096332 + (TA)n Simple_repeat Simple_repeat 1 160 0 1 1890 2351 50 25 0 chr1 171099150 171099433 -26095999 - L1Md_T LINE L1 0 6582 6293 1 1890 22 0 0 0 chr1 171099800 171099822 -26095610 + AT_rich Low_complexity Low_complexity 1 22 0 1 1890 4796 43 40 0 chr1 171099829 171100385 -26095047 - L1Md_T LINE L1 0 6582 6005 1 1890 245 296 12 24 chr1 171100548 171100631 -26094801 + ID2 SINE ID 2 83 0 1 1890 259 283 25 61 chr1 171100672 171100876 -26094556 - RMER17C LTR ERVK -87 323 35 1 1890 450 290 116 30 chr1 171100857 171100910 -26094522 - MLT1C LTR MaLR -231 236 181 1 1890 453 19 0 0 chr1 171100910 171100964 -26094468 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1890 450 290 116 30 chr1 171100964 171101109 -26094323 - MLT1C LTR MaLR -287 180 21 1 1890 360 315 43 48 chr1 171101278 171101485 -26093947 - MTEa LTR MaLR -2 377 172 1 1890 510 292 104 12 chr1 171101603 171101776 -26093656 - B4A SINE B4 -86 206 18 1 1890 210 297 126 19 chr1 171102415 171102518 -26092914 - PB1D10 SINE Alu -3 114 1 1 1890 753 326 5 14 chr1 171102605 171102823 -26092609 + B3 SINE B2 1 216 0 1 1890 2432 182 4 62 chr1 171102968 171103501 -26091931 - L1_Mur2 LINE L1 -506 5371 4870 1 1890 4646 167 27 10 chr1 171103504 171104430 -26091002 + Lx5 LINE L1 5543 6487 -563 1 1890 25 0 0 0 chr1 171104596 171104621 -26090811 + AT_rich Low_complexity Low_complexity 1 25 0 1 1890 37199 57 13 5 chr1 171104855 171110487 -26084945 + L1Md_T LINE L1 99 5586 -297 1 1890 8473 56 2 0 chr1 171110487 171111481 -26083951 + L1Md_T LINE L1 5587 6582 0 1 1890 186 43 0 0 chr1 171111488 171111511 -26083921 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1890 854 10 0 0 chr1 171111518 171111614 -26083818 - L1Md_F2 LINE L1 -537 6045 5950 1 1890 2384 54 4 0 chr1 171111614 171111893 -26083539 + L1Md_F2 LINE L1 6303 6582 0 1 1890 252 59 0 0 chr1 171112136 171112170 -26083262 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1890 387 0 0 0 chr1 171112643 171112686 -26082746 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1890 243 0 0 0 chr1 171113681 171113708 -26081724 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1890 244 289 127 34 chr1 171114195 171114313 -26081119 + MER63B DNA AcHobo 307 435 -1 1 1890 414 0 0 0 chr1 171115064 171115110 -26080322 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1890 774 277 119 25 chr1 171116421 171116665 -26078767 + B4 SINE B4 6 272 -20 1 1890 573 55 0 0 chr1 171116712 171116785 -26078647 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1890 423 0 0 0 chr1 171117733 171117780 -26077652 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1890 1672 223 26 24 chr1 171119130 171119548 -26075884 + MTD LTR MaLR 1 419 0 1 1890 515 302 127 0 chr1 171119579 171119846 -26075586 - MER47B DNA MER2_type -1 417 56 1 1890 431 35 0 17 chr1 171120032 171120090 -26075342 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 1 1890 20337 26 1 0 chr1 171120467 171123630 -26071802 - L1Md_T LINE L1 0 6582 3417 1 1890 10110 34 1 0 chr1 171123628 171124933 -26070499 + L1Md_T LINE L1 2003 3308 -2575 1 1890 373 333 56 33 chr1 171124933 171125147 -26070285 + LTR40b LTR ERVL 244 462 0 1 1890 5641 53 1 1 chr1 171126235 171126934 -26068498 - L1Md_F2 LINE L1 -3 6579 5881 1 1890 1293 19 0 0 chr1 171126934 171127088 -26068344 + L1Md_F2 LINE L1 5709 5862 -21 1 1890 523 278 39 109 chr1 171127088 171127318 -26068114 - B4A SINE B4 -77 215 2 1 1890 993 163 0 0 chr1 171127695 171127873 -26067559 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 1 1890 207 0 0 0 chr1 171128042 171128065 -26067367 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1890 563 0 15 0 chr1 171128425 171128492 -26066940 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1890 492 292 61 119 chr1 171128530 171128825 -26066607 - B4A SINE B4 -14 278 1 1 1890 799 291 31 127 chr1 171129509 171129863 -26065569 - MTE2a LTR MaLR -59 320 1 1 1890 21 71 0 0 chr1 171132594 171132636 -26062796 + AT_rich Low_complexity Low_complexity 1 42 0 1 1890 296 335 58 12 chr1 171133554 171133726 -26061706 + L1MEf LINE L1 1057 1236 -4964 1 1890 77 41 0 8 chr1 171134344 171134433 -26060999 + AT_rich Low_complexity Low_complexity 1 89 0 1 1890 3612 56 26 7 chr1 171134433 171134898 -26060534 - L1Md_F2 LINE L1 -12 6570 6097 1 1890 77 41 0 8 chr1 171134898 171134931 -26060501 + AT_rich Low_complexity Low_complexity 1 33 0 1 1890 238 285 85 13 chr1 171135030 171135183 -26060249 + L1ME1 LINE L1 5781 5944 -235 1 1890 207 0 0 0 chr1 171135359 171135382 -26060050 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1890 214 346 14 95 chr1 171136065 171136212 -26059220 - MIR3 SINE MIR -59 149 15 1 1890 466 324 25 44 chr1 171136566 171136790 -26058642 - MIR SINE MIR -46 222 1 1 1890 758 69 23 15 chr1 171136873 171137005 -26058427 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 1 1890 5285 54 5 8 chr1 171137218 171137889 -26057543 + L1_Mus2 LINE L1 5889 6557 -9 1 1890 207 0 0 0 chr1 171137889 171137912 -26057520 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1890 992 32 8 0 chr1 171137912 171138036 -26057396 + (GAA)n Simple_repeat Simple_repeat 3 127 0 1 1890 626 0 14 0 chr1 171138036 171138110 -26057322 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 1 1890 523 289 29 15 chr1 171138214 171138418 -26057014 - RMER15-int LTR ERVL -4326 673 467 1 1890 382 318 88 0 chr1 171138634 171138804 -26056628 - RMER15 LTR ERVL -14 561 377 1 1890 272 352 0 0 chr1 171138998 171139103 -26056329 - Lx8 LINE L1 -330 7143 7039 1 1890 298 292 51 94 chr1 171139113 171139389 -26056043 + L1M4 LINE L1 2616 2879 -3267 1 1890 265 222 31 31 chr1 171140476 171140541 -26054891 + MIRc SINE MIR 128 192 -76 1 1890 237 33 0 0 chr1 171141416 171141446 -26053986 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1890 657 0 0 0 chr1 171143757 171143830 -26051602 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1890 914 74 7 26 chr1 171143905 171144057 -26051375 - L1Md_F2 LINE L1 0 6582 6434 1 1890 405 39 0 0 chr1 171144210 171144261 -26051171 + (CAA)n Simple_repeat Simple_repeat 2 52 0 1 1890 4812 125 24 6 chr1 171144324 171145041 -26050391 - RMER19A LTR ERVK -3 734 5 1 1890 363 284 26 35 chr1 171145237 171145350 -26050082 + B3 SINE B2 105 216 0 1 1890 744 196 127 0 chr1 171145840 171146013 -26049419 + MLT1B LTR MaLR 58 252 -138 1 1890 778 324 14 21 chr1 171146139 171146426 -26049006 - B4A SINE B4 -7 285 1 2 1890 25 0 0 0 chr1 171146640 171146665 -26048767 + AT_rich Low_complexity Low_complexity 1 25 0 2 1890 458 274 17 0 chr1 171146725 171146842 -26048590 - RSINE1 SINE B4 -41 124 6 2 1890 770 246 9 53 chr1 171146819 171147046 -26048386 - B4 SINE B4 -75 217 1 2 1890 369 0 0 0 chr1 171147443 171147484 -26047948 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2 1890 541 330 138 39 chr1 171148847 171149282 -26046150 - MLT1D LTR MaLR 0 505 28 2 1890 1051 39 0 0 chr1 171151929 171152059 -26043373 + B1_Mus2 SINE Alu 17 146 -1 2 1890 1111 146 101 14 chr1 171152170 171152378 -26043054 - URR1A DNA MER1_type 0 226 1 2 1890 497 44 0 14 chr1 171153553 171153622 -26041810 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1890 382 296 35 9 chr1 171153872 171153988 -26041444 - MER5A1 DNA MER1_type -31 135 17 2 1890 1191 279 39 11 chr1 171155042 171155404 -26040028 - MTEb LTR MaLR -2 377 6 2 1890 200 280 149 34 chr1 171155410 171155543 -26039889 + MIR3 SINE MIR 38 189 -79 2 1890 225 300 117 35 chr1 171155720 171155917 -26039515 - L2a LINE L2 0 3426 3214 2 1890 265 136 220 0 chr1 171156775 171156834 -26038598 + ORR1A4 LTR MaLR 1 72 -257 2 1890 325 182 0 0 chr1 171156850 171156905 -26038527 - ORR1A4 LTR MaLR 0 394 340 2 1890 777 140 67 0 chr1 171156907 171157057 -26038375 - ORR1A4-int LTR MaLR -1803 160 1 2 1890 1932 135 6 55 chr1 171157057 171157403 -26038029 - ORR1A4 LTR MaLR 0 329 1 2 1890 408 20 0 0 chr1 171157592 171157641 -26037791 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1890 1073 292 58 45 chr1 171157642 171158001 -26037431 - MTE2b LTR MaLR -12 367 4 2 1890 5381 140 8 3 chr1 171158027 171158879 -26036553 - Lx LINE L1 -5 6649 5794 2 1890 390 271 159 27 chr1 171158881 171159500 -26035932 - L1M7 LINE L1 -735 5522 4808 2 1890 689 307 88 7 chr1 171159497 171160043 -26035389 - L1M2 LINE L1 -564 5739 5141 2 1890 548 40 0 13 chr1 171161221 171161297 -26034135 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1890 292 289 53 20 chr1 171161523 171161675 -26033757 - L1M7 LINE L1 -3990 2321 2165 2 1890 22 35 0 0 chr1 171161749 171161778 -26033654 + AT_rich Low_complexity Low_complexity 1 29 0 2 1890 196 182 45 0 chr1 171162168 171162212 -26033220 + MIRc SINE MIR 173 218 -50 2 1890 1114 267 94 30 chr1 171162609 171162876 -26032556 + Lx6 LINE L1 7039 7314 -146 2 1890 549 0 0 0 chr1 171162876 171162937 -26032495 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1890 474 18 0 0 chr1 171162942 171162997 -26032435 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1890 1114 267 94 30 chr1 171162997 171163094 -26032338 + Lx6 LINE L1 7315 7433 -27 2 1890 3662 182 121 76 chr1 171163104 171163961 -26031471 + RMER19B LTR ERVK 1 896 -6 2 1890 720 12 0 0 chr1 171163964 171164050 -26031382 - L1Md_F2 LINE L1 -541 6041 5956 2 1890 4217 51 9 2 chr1 171164050 171164579 -26030853 + L1Md_F2 LINE L1 6050 6582 0 2 1890 482 310 15 15 chr1 171164620 171164751 -26030681 + B1F SINE Alu 17 147 -2 2 1890 552 42 0 0 chr1 171165116 171165187 -26030245 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1890 265 352 63 0 chr1 171166385 171166527 -26028905 - MIR SINE MIR 0 262 112 2 1890 447 322 16 8 chr1 171166538 171166660 -26028772 + ID_B1 SINE B4 40 162 -62 2 1890 305 107 66 13 chr1 171166688 171166764 -26028668 + GA-rich Low_complexity Low_complexity 5 84 0 2 1890 213 39 0 0 chr1 171166858 171166884 -26028548 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1890 21 0 0 0 chr1 171167761 171167782 -26027650 + AT_rich Low_complexity Low_complexity 1 21 0 2 1890 226 333 0 0 chr1 171167844 171167910 -26027522 + L1MC4a LINE L1 7596 7661 -221 2 1890 248 280 97 0 chr1 171169762 171169855 -26025577 + L1MA5 LINE L1 5835 5936 -364 2 1890 727 226 77 59 chr1 171170215 171170436 -26024996 - URR1B DNA MER1_type 0 225 1 2 1890 277 294 26 35 chr1 171170665 171170778 -26024654 + AmnSINE1 SINE SINE 298 409 -166 2 1890 899 280 34 19 chr1 171171400 171171666 -26023766 + B4 SINE B4 5 274 -18 2 1890 233 246 101 0 chr1 171172144 171172213 -26023219 + MIRb SINE MIR 121 196 -72 2 1890 438 328 96 0 chr1 171173188 171173365 -26022067 + MER58A DNA MER1_type 16 209 -15 2 1890 216 261 0 0 chr1 171173504 171173573 -26021859 + A-rich Low_complexity Low_complexity 1 69 0 2 1890 486 75 0 0 chr1 171174685 171174752 -26020680 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 1890 232 306 210 48 chr1 171174896 171175400 -26020032 - L2 LINE L2 -337 3082 2497 2 1890 483 292 6 43 chr1 171176239 171176400 -26019032 - MER20 DNA MER1_type -64 155 1 2 1890 506 43 0 14 chr1 171176681 171176751 -26018681 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1890 197 163 20 0 chr1 171176761 171176810 -26018622 + T-rich Low_complexity Low_complexity 1 50 0 2 1890 239 348 0 0 chr1 171177570 171177671 -26017761 + MIRb SINE MIR 162 262 0 2 1890 396 335 68 23 chr1 171178745 171179002 -26016430 + B4A SINE B4 3 277 -15 2 1891 2152 167 40 3 chr1 171180065 171180437 -26014995 - ORR1B1 LTR MaLR -8 386 1 2 1891 23 0 0 0 chr1 171181660 171181683 -26013749 + AT_rich Low_complexity Low_complexity 1 23 0 2 1891 876 167 14 0 chr1 171181689 171181827 -26013605 + B1_Mus1 SINE Alu 1 140 -8 2 1891 237 108 0 0 chr1 171181827 171181864 -26013568 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 2 1891 321 26 0 0 chr1 171182091 171182129 -26013303 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1891 950 325 18 28 chr1 171183286 171183308 -26012124 - B4A SINE B4 -5 287 270 2 1891 527 0 16 0 chr1 171183308 171183371 -26012061 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1891 950 325 18 28 chr1 171183371 171183633 -26011799 - B4A SINE B4 -23 269 6 2 1891 329 331 77 53 chr1 171183774 171183943 -26011489 + MTD LTR MaLR 1 173 -206 2 1891 324 0 0 0 chr1 171183971 171184007 -26011425 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1891 190 0 67 0 chr1 171184014 171184044 -26011388 + (GGGGA)n Simple_repeat Simple_repeat 2 33 0 2 1891 632 252 40 14 chr1 171184046 171184219 -26011213 + MTD LTR MaLR 201 419 0 2 1891 485 32 16 0 chr1 171184350 171184413 -26011019 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1891 664 286 44 67 chr1 171185437 171185662 -26009770 + B4A SINE B4 1 220 -72 2 1891 1389 61 0 0 chr1 171185675 171185855 -26009577 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1891 513 0 0 0 chr1 171185963 171186020 -26009412 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1891 294 98 0 0 chr1 171186218 171186269 -26009163 + (T)n Simple_repeat Simple_repeat 1 51 0 2 1891 225 299 168 5 chr1 171186610 171186795 -26008637 + RMER1A Other Other 139 353 -677 2 1891 2329 210 41 14 chr1 171186767 171187275 -26008157 + RMER1B Other Other 541 1062 -4 2 1891 228 322 64 11 chr1 171187323 171187417 -26008015 - MER5A1 DNA MER1_type -66 100 2 2 1891 351 319 32 50 chr1 171187541 171187759 -26007673 + MIRb SINE MIR 10 223 -45 2 1891 761 271 114 5 chr1 171188479 171188698 -26006734 + ORR1E LTR MaLR 3 245 -114 2 1891 300 188 0 0 chr1 171188698 171188762 -26006670 + CT-rich Low_complexity Low_complexity 2 65 0 2 1891 496 271 45 21 chr1 171188762 171188950 -26006482 + MTEa LTR MaLR 163 373 -6 2 1891 260 325 0 0 chr1 171189631 171189708 -26005724 - ID4 SINE ID -5 78 2 2 1891 386 284 28 0 chr1 171189708 171189817 -26005615 - B1F SINE Alu 0 149 38 2 1891 197 299 80 11 chr1 171190713 171190801 -26004631 - MIR SINE MIR -63 145 52 2 1891 329 259 94 60 chr1 171191028 171191199 -26004233 - B3A SINE B2 -4 191 11 2 1891 275 293 0 0 chr1 171191678 171191753 -26003679 + ID2 SINE ID 2 76 -7 2 1891 198 138 34 17 chr1 171191753 171191806 -26003626 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1891 549 0 0 0 chr1 171191806 171191867 -26003565 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1891 249 33 0 0 chr1 171192019 171192049 -26003383 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1891 558 147 0 0 chr1 171192049 171192178 -26003254 + (GA)n Simple_repeat Simple_repeat 1 129 0 2 1891 822 173 236 16 chr1 171192948 171193130 -26002302 - URR1A DNA MER1_type 0 226 5 2 1891 467 284 90 6 chr1 171193244 171193400 -26002032 + MLT1A0 LTR MaLR 197 365 0 2 1891 269 300 39 39 chr1 171193400 171193503 -26001929 + Charlie5 DNA MER1_type 21 123 -2501 2 1891 593 274 69 59 chr1 171193482 171193873 -26001559 + Charlie5 DNA MER1_type 2222 2616 -8 2 1891 939 312 75 17 chr1 171193904 171194266 -26001166 + MLT1B LTR MaLR 8 390 0 2 1891 205 266 92 15 chr1 171194334 171194399 -26001033 + L2b LINE L2 3225 3294 -81 2 1891 786 314 89 38 chr1 171194845 171195159 -26000273 - MLT1A0 LTR MaLR -5 360 31 2 1891 560 270 70 26 chr1 171196075 171196231 -25999201 + RSINE1 SINE B4 3 165 0 2 1891 417 247 221 5 chr1 171196297 171196496 -25998936 + L1MC LINE L1 4518 4759 -1387 2 1891 283 292 52 17 chr1 171196507 171196622 -25998810 + B1F1 SINE Alu 1 119 -1 2 1891 534 275 90 17 chr1 171197678 171197965 -25997467 + L1MCa LINE L1 2142 2462 -3859 2 1891 752 307 92 6 chr1 171197967 171198295 -25997137 + L1MB3 LINE L1 5738 6093 -90 2 1891 324 0 0 0 chr1 171198356 171198392 -25997040 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1891 1313 296 66 13 chr1 171198567 171199176 -25996256 + L1MCa LINE L1 2553 3193 -3128 2 1891 1310 262 36 24 chr1 171199203 171199250 -25996182 + Lx9 LINE L1 6292 6341 -1303 2 1891 207 114 0 0 chr1 171199250 171199285 -25996147 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1891 1310 262 36 24 chr1 171199285 171199573 -25995859 + Lx9 LINE L1 6342 6631 -1013 2 1891 1087 210 156 0 chr1 171199578 171199854 -25995578 + Lx9 LINE L1 6771 7089 -555 2 1891 698 278 122 33 chr1 171199993 171200420 -25995012 + L1MC3 LINE L1 7312 7776 -9 2 1891 324 70 0 0 chr1 171200427 171200470 -25994962 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1891 1022 62 5 48 chr1 171200634 171200821 -25994611 + (GGGGA)n Simple_repeat Simple_repeat 1 179 0 2 1891 499 223 208 0 chr1 171201426 171201556 -25993876 - B3A SINE B2 -41 157 1 2 1891 201 314 137 33 chr1 171203313 171203524 -25991908 + L2a LINE L2 268 500 -2919 2 1891 29 0 0 0 chr1 171203884 171203913 -25991519 + AT_rich Low_complexity Low_complexity 1 29 0 2 1891 843 106 0 32 chr1 171203943 171204128 -25991304 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1891 620 161 0 32 chr1 171204373 171204559 -25990873 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1891 871 335 99 40 chr1 171204596 171205450 -25989982 + L2a LINE L2 1512 2416 -1003 2 1891 246 341 70 29 chr1 171205684 171205856 -25989576 + L2a LINE L2 2783 2961 -458 2 1891 260 324 177 21 chr1 171205941 171206133 -25989299 + L2a LINE L2 3200 3421 -5 2 1891 448 350 0 0 chr1 171207410 171207530 -25987902 + MTEa LTR MaLR 1 120 -259 3 1891 415 351 45 105 chr1 171207530 171207744 -25987688 + MT2A LTR ERVL 1 314 -219 3 1891 290 275 14 0 chr1 171208392 171208461 -25986971 + ID SINE ID 1 70 -154 3 1891 243 88 0 0 chr1 171208538 171208572 -25986860 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1891 275 121 17 0 chr1 171208596 171208654 -25986778 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 1891 233 204 55 18 chr1 171209692 171209747 -25985685 + MTEb LTR MaLR 1 57 -322 3 1891 393 287 39 55 chr1 171209845 171210157 -25985275 + MTEb LTR MaLR 112 379 0 3 1891 619 306 11 37 chr1 171210381 171210571 -25984861 + MIR3 SINE MIR 9 193 -15 3 1891 324 0 0 0 chr1 171212407 171212443 -25982989 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1891 356 283 22 0 chr1 171212515 171212607 -25982825 - B4A SINE B4 -2 290 197 3 1891 208 359 29 59 chr1 171212688 171212824 -25982608 + L2c LINE L2 3254 3385 -2 3 1891 694 257 29 73 chr1 171214549 171214755 -25980677 + B3A SINE B2 2 198 0 3 1891 38978 13 1 7 chr1 171214927 171220286 -25975146 + L1Md_A LINE L1 261 5585 -298 3 1891 9344 13 0 9 chr1 171220287 171221292 -25974140 + L1Md_A LINE L1 5587 6582 0 3 1891 220 310 170 6 chr1 171221317 171221476 -25973956 + MIR SINE MIR 16 200 -62 3 1891 213 132 0 0 chr1 171221841 171221879 -25973553 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1891 260 274 166 35 chr1 171222275 171222419 -25973013 + MIRc SINE MIR 33 197 -71 3 1891 863 256 5 20 chr1 171223542 171223728 -25971704 + B3 SINE B2 4 187 -29 3 1891 549 0 0 0 chr1 171223728 171223789 -25971643 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 3 1891 863 256 5 20 chr1 171223789 171223805 -25971627 + B3 SINE B2 188 203 -13 3 1891 836 357 105 45 chr1 171224365 171224945 -25970487 + Arthur1B DNA Tip100 38 652 -573 3 1891 245 338 12 0 chr1 171224988 171225068 -25970364 + Arthur1B DNA Tip100 740 820 -405 3 1891 310 361 63 69 chr1 171225074 171225422 -25970010 + ORR1C2 LTR MaLR 1 346 -38 3 1891 376 299 109 11 chr1 171225476 171225699 -25969733 + Arthur1C DNA Tip100 223 358 -5 3 1891 184 339 0 0 chr1 171225796 171225855 -25969577 + MIRm SINE MIR 24 85 -191 3 1891 1167 106 0 0 chr1 171226020 171226249 -25969183 + (TG)n Simple_repeat Simple_repeat 1 229 0 3 1891 798 216 19 76 chr1 171226258 171226468 -25968964 + B3A SINE B2 1 198 0 3 1891 342 0 0 0 chr1 171226503 171226541 -25968891 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1891 274 227 66 85 chr1 171228222 171228328 -25967104 - MER33 DNA MER1_type -202 122 19 3 1891 471 282 8 39 chr1 171228409 171228538 -25966894 + RMER20B LTR ERVK 1 125 -502 3 1891 700 266 124 0 chr1 171228714 171228932 -25966500 + RMER20B LTR ERVK 147 391 -236 3 1891 583 289 132 19 chr1 171230165 171230482 -25964950 + Charlie5 DNA MER1_type 2272 2624 0 3 1891 194 256 228 13 chr1 171230554 171230633 -25964799 - MIRc SINE MIR -57 211 116 3 1891 387 0 0 0 chr1 171230635 171230678 -25964754 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1891 1635 257 55 8 chr1 171231198 171231582 -25963850 - MTD LTR MaLR 0 419 18 3 1891 376 264 23 0 chr1 171231749 171231836 -25963596 - PB1D10 SINE Alu -28 89 1 3 1891 1687 224 67 21 chr1 171232259 171232647 -25962785 - MTD LTR MaLR -8 411 6 3 1891 496 298 29 53 chr1 171232758 171232964 -25962468 - B4A SINE B4 -18 274 74 3 1891 1152 217 64 68 chr1 171232955 171233087 -25962345 - MTE2b LTR MaLR -84 295 163 3 1891 570 29 0 0 chr1 171233087 171233155 -25962277 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1891 1152 217 64 68 chr1 171233155 171233318 -25962114 - MTE2b LTR MaLR -217 162 1 3 1891 245 290 42 21 chr1 171233456 171233551 -25961881 + MER102a DNA MER1_type 99 195 -135 3 1891 1991 164 35 9 chr1 171233602 171233947 -25961485 + ORR1B1 LTR MaLR 41 394 0 3 1891 451 294 63 67 chr1 171234334 171234526 -25960906 + MLT1D LTR MaLR 244 419 -86 3 1891 255 250 16 0 chr1 171234823 171234887 -25960545 + GA-rich Low_complexity Low_complexity 3 67 0 3 1891 663 48 0 0 chr1 171235690 171235773 -25959659 + (TC)n Simple_repeat Simple_repeat 1 83 0 3 1891 783 215 0 69 chr1 171236484 171236499 -25958933 - RSINE1 SINE B4 0 165 152 3 1891 576 0 0 0 chr1 171236499 171236563 -25958869 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1891 783 215 0 69 chr1 171236563 171236722 -25958710 - RSINE1 SINE B4 -14 151 3 3 1891 321 135 0 0 chr1 171237532 171237584 -25957848 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1891 981 39 85 8 chr1 171237917 171238041 -25957391 + B1_Mus2 SINE Alu 1 135 -12 3 1891 569 27 27 0 chr1 171238041 171238115 -25957317 + (GAAAA)n Simple_repeat Simple_repeat 4 79 0 3 1891 224 189 0 70 chr1 171238651 171238708 -25956724 + (TATG)n Simple_repeat Simple_repeat 3 55 0 3 1891 679 294 103 0 chr1 171238746 171238940 -25956492 - B4 SINE B4 -77 215 2 3 1891 191 262 0 0 chr1 171239678 171239720 -25955712 - MIR SINE MIR -108 154 113 3 1891 790 293 35 57 chr1 171239748 171240063 -25955369 - MLT2B1 LTR ERVL -212 308 1 3 1891 277 265 119 23 chr1 171241528 171241730 -25953702 - L1M5 LINE L1 -2052 5830 5607 3 1891 246 206 0 0 chr1 171241881 171241944 -25953488 - L1M5 LINE L1 -803 5437 5375 3 1891 425 254 2 13 chr1 171242387 171242506 -25952926 + B2_Mm2 SINE B2 4 116 -100 3 1891 225 379 10 10 chr1 171242509 171242605 -25952827 - MER5A1 DNA MER1_type -64 102 7 3 1891 230 0 33 0 chr1 171242720 171242750 -25952682 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1891 1084 85 0 0 chr1 171242763 171242904 -25952528 + B1_Mus1 SINE Alu 3 143 -5 3 1891 317 292 35 119 chr1 171243797 171244049 -25951383 + MIRc SINE MIR 5 238 -30 3 1891 572 276 32 26 chr1 171244197 171244353 -25951079 + RSINE1 SINE B4 9 165 0 3 1891 28 0 0 0 chr1 171244390 171244418 -25951014 + AT_rich Low_complexity Low_complexity 1 28 0 3 1891 1044 0 0 0 chr1 171244761 171244877 -25950555 + (GGGAGA)n Simple_repeat Simple_repeat 1 116 0 3 1891 284 227 0 11 chr1 171245180 171245269 -25950163 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1891 352 328 71 100 chr1 171247205 171247271 -25948161 - MamRep38 DNA hAT -26 269 216 3 1891 6158 39 8 1 chr1 171247271 171248015 -25947417 + L1Md_F2 LINE L1 5822 6570 -12 3 1891 352 328 71 100 chr1 171248015 171248158 -25947274 - MamRep38 DNA hAT -80 215 66 3 1891 313 323 33 91 chr1 171248249 171248472 -25946960 + L1MC LINE L1 3511 3724 -2422 3 1891 353 368 13 83 chr1 171248472 171248786 -25946646 - B4A SINE B4 0 292 1 3 1891 313 323 33 91 chr1 171248786 171248869 -25946563 + L1MC LINE L1 3725 3798 -2348 3 1891 5642 108 13 24 chr1 171248909 171249843 -25945589 + L1_Mus3 LINE L1 5734 6638 0 3 1891 300 364 53 30 chr1 171249978 171250111 -25945321 + ID_B1 SINE B4 78 213 -11 3 1891 245 271 39 26 chr1 171250406 171250561 -25944871 + L1M5 LINE L1 4156 4312 -1834 3 1891 339 345 112 65 chr1 171250935 171251347 -25944085 + L1M5 LINE L1 4822 5252 -894 3 1891 362 369 81 22 chr1 171251485 171251707 -25943725 + L1M5 LINE L1 5401 5635 -605 3 1891 3520 13 5 0 chr1 171251782 171252176 -25943256 + MTA_Mm LTR MaLR 1 396 0 3 1891 23 33 0 0 chr1 171252176 171252206 -25943226 + AT_rich Low_complexity Low_complexity 1 30 0 3 1891 31 96 0 0 chr1 171252284 171252378 -25943054 + AT_rich Low_complexity Low_complexity 1 94 0 3 1891 570 29 0 0 chr1 171252500 171252568 -25942864 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1891 330 80 0 0 chr1 171252577 171252627 -25942805 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 3 1891 21 57 0 0 chr1 171252639 171252674 -25942758 + AT_rich Low_complexity Low_complexity 1 35 0 3 1891 186 189 0 0 chr1 171253203 171253240 -25942192 + GA-rich Low_complexity Low_complexity 1 37 0 3 1891 579 245 58 41 chr1 171253882 171254125 -25941307 - L1_Mur3 LINE L1 -145 5735 5489 3 1891 346 229 10 0 chr1 171254128 171254224 -25941208 + L1_Rod LINE L1 5711 5807 -40 3 1891 513 104 0 0 chr1 171254291 171254368 -25941064 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1891 209 267 36 62 chr1 171254471 171254583 -25940849 - L2 LINE L2 -1545 1874 1766 3 1891 288 269 255 8 chr1 171255546 171255793 -25939639 - Lx9 LINE L1 -21 7623 7316 3 1891 295 342 20 0 chr1 171255815 171255949 -25939483 + Lx9 LINE L1 7046 7301 -343 3 1891 212 214 29 0 chr1 171255957 171256027 -25939405 + (TATG)n Simple_repeat Simple_repeat 4 75 0 3 1891 599 183 22 22 chr1 171256031 171256210 -25939222 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 3 1891 185 234 92 15 chr1 171256546 171256611 -25938821 + MIR3 SINE MIR 94 163 -45 3 1891 684 83 0 0 chr1 171256636 171256732 -25938700 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 1891 194 222 0 18 chr1 171257285 171257340 -25938092 + G-rich Low_complexity Low_complexity 1 54 0 3 1891 395 316 11 38 chr1 171257959 171258191 -25937241 + (CATATA)n Simple_repeat Simple_repeat 1 225 0 3 1891 409 355 0 11 chr1 171258089 171258271 -25937161 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1891 212 312 51 13 chr1 171258572 171258650 -25936782 - MIR3 SINE MIR -15 193 113 3 1891 565 293 85 57 chr1 171259086 171259332 -25936100 - B4 SINE B4 -16 276 24 3 1891 1238 289 71 18 chr1 171259332 171259713 -25935719 + MTD LTR MaLR 5 405 -14 3 1891 185 292 30 15 chr1 171259806 171259872 -25935560 + L2 LINE L2 1253 1319 -2100 3 1891 396 336 37 78 chr1 171260354 171260787 -25934645 + L2 LINE L2 1817 2231 -1188 3 1891 191 365 62 24 chr1 171260970 171261178 -25934254 + L2 LINE L2 2397 2612 -807 3 1891 383 215 185 9 chr1 171261202 171261310 -25934122 + B4 SINE B4 1 127 -165 3 1891 450 0 0 0 chr1 171261422 171261472 -25933960 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1891 805 158 67 15 chr1 171261591 171261726 -25933706 + B1_Mus2 SINE Alu 5 146 -1 3 1891 1198 50 0 0 chr1 171261964 171262105 -25933327 + B1_Mus1 SINE Alu 1 141 -7 3 1891 207 100 0 0 chr1 171262107 171262137 -25933295 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1891 237 354 38 15 chr1 171262500 171262632 -25932800 - MIR SINE MIR -71 191 57 3 1891 2026 160 45 8 chr1 171263379 171263733 -25931699 + ORR1B2 LTR MaLR 1 367 0 3 1891 395 321 73 46 chr1 171264214 171264802 -25930630 + L1MEc LINE L1 563 1166 -5234 3 1891 214 73 49 0 chr1 171264923 171264964 -25930468 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 3 1891 923 77 26 0 chr1 171264975 171265130 -25930302 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 3 1891 737 245 28 46 chr1 171265289 171265507 -25929925 + MLT2B4 LTR ERVL 1 214 -342 4 1891 1111 234 72 123 chr1 171265511 171265901 -25929531 - MTE2a LTR MaLR -1 378 9 4 1891 537 336 101 9 chr1 171266076 171266412 -25929020 + L1MEc LINE L1 262 628 -5772 4 1891 563 222 138 0 chr1 171266457 171266660 -25928772 + L1MEc LINE L1 813 1043 -5357 4 1891 263 268 14 0 chr1 171266673 171266744 -25928688 + GA-rich Low_complexity Low_complexity 3 74 0 4 1891 251 175 12 36 chr1 171266801 171266884 -25928548 + L1MEc LINE L1 1281 1361 -5039 4 1891 332 311 135 16 chr1 171266966 171267159 -25928273 + L1MEc LINE L1 1385 1600 -4800 4 1891 233 109 22 0 chr1 171267246 171267292 -25928140 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1891 22 0 0 0 chr1 171267328 171267350 -25928082 + AT_rich Low_complexity Low_complexity 1 22 0 4 1891 198 0 0 0 chr1 171267492 171267514 -25927918 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1891 324 365 77 43 chr1 171268438 171268647 -25926785 - MIRb SINE MIR -11 257 42 4 1891 3210 13 0 0 chr1 171269465 171269853 -25925579 - L1_Mm LINE L1 -1711 4172 3785 4 1891 7846 30 0 0 chr1 171269853 171270770 -25924662 + L1Md_T LINE L1 5664 6580 -2 4 1891 40 21 0 0 chr1 171270823 171270870 -25924562 + AT_rich Low_complexity Low_complexity 1 47 0 4 1891 639 26 0 0 chr1 171270925 171271002 -25924430 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1891 387 387 34 25 chr1 171271337 171271541 -25923891 + LTR88c LTR Genie? 122 327 -535 4 1891 22 0 0 0 chr1 171272340 171272362 -25923070 + AT_rich Low_complexity Low_complexity 1 22 0 4 1891 360 0 0 0 chr1 171272381 171272421 -25923011 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1891 192 267 79 34 chr1 171272566 171272655 -25922777 - MIR SINE MIR 0 262 170 4 1891 364 364 8 0 chr1 171273045 171273177 -25922255 + ID_B1 SINE B4 92 224 0 4 1891 25 31 0 0 chr1 171273256 171273288 -25922144 + AT_rich Low_complexity Low_complexity 1 32 0 4 1891 201 319 28 42 chr1 171273954 171274026 -25921406 - MIRc SINE MIR -28 240 170 4 1891 482 295 8 0 chr1 171274183 171274346 -25921086 - L1MA6 LINE L1 -230 6070 5906 4 1891 421 306 19 52 chr1 171274349 171274504 -25920928 - MIRb SINE MIR -101 167 18 4 1891 242 351 0 0 chr1 171275490 171275567 -25919865 + MIRb SINE MIR 163 239 -29 4 1891 1004 142 11 0 chr1 171275883 171276059 -25919373 + GA-rich Low_complexity Low_complexity 2 179 0 4 1891 1356 67 0 0 chr1 171276091 171276271 -25919161 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1891 612 309 193 28 chr1 171276389 171276782 -25918650 + MER21B LTR ERV1 279 736 -127 4 1891 206 344 42 21 chr1 171277124 171277219 -25918213 + L2b LINE L2 3043 3139 -248 4 1891 260 315 59 85 chr1 171277290 171277408 -25918024 + L2b LINE L2 3235 3349 -26 4 1891 509 319 11 6 chr1 171278127 171278310 -25917122 - MIR SINE MIR -64 198 15 4 1891 306 0 0 0 chr1 171279484 171279518 -25915914 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 1891 270 265 141 10 chr1 171279614 171279713 -25915719 + RSINE1 SINE B4 4 115 -50 4 1891 854 333 27 50 chr1 171280720 171281204 -25914228 - Ricksha_c DNA MuDR -1158 890 418 4 1891 3557 217 52 29 chr1 171281791 171282676 -25912756 - RMER19B LTR ERVK -39 863 1 4 1891 566 314 38 8 chr1 171283023 171283261 -25912171 - MER2 DNA MER2_type -71 274 30 4 1891 843 118 0 0 chr1 171283575 171283710 -25911722 + (GGGA)n Simple_repeat Simple_repeat 4 138 0 4 1891 313 337 62 40 chr1 171283815 171283991 -25911441 + B3A SINE B2 1 180 -18 4 1891 626 321 104 47 chr1 171284746 171285605 -25909827 + L1MB8 LINE L1 5230 6150 -34 4 1891 225 0 0 0 chr1 171287170 171287195 -25908237 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1891 1023 117 0 0 chr1 171288821 171288975 -25906457 + B2_Mm2 SINE B2 1 154 -41 4 1891 639 0 0 0 chr1 171288976 171289047 -25906385 + (CATA)n Simple_repeat Simple_repeat 2 72 0 4 1891 739 302 66 19 chr1 171289744 171290001 -25905431 + B4A SINE B4 1 269 -23 4 1891 923 250 19 62 chr1 171290082 171290342 -25905090 + B4 SINE B4 44 292 0 4 1891 1333 201 92 56 chr1 171290448 171290807 -25904625 - ORR1D1 LTR MaLR -2 372 1 4 1891 1655 230 19 8 chr1 171291085 171291453 -25903979 + ORR1D1 LTR MaLR 3 374 0 4 1891 192 77 0 0 chr1 171291826 171291852 -25903580 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4 1891 288 355 13 64 chr1 171291970 171292205 -25903227 - MLT1J LTR MaLR -149 363 141 4 1891 243 336 60 64 chr1 171292572 171292807 -25902625 + LTR78 LTR ERV1 212 445 -859 4 1891 2758 144 21 19 chr1 171293007 171293487 -25901945 - Lx4A LINE L1 -1 7057 6577 4 1891 2239 132 6 0 chr1 171293558 171293883 -25901549 - ORR1A2 LTR MaLR 0 327 1 4 1891 334 324 9 19 chr1 171294748 171294855 -25900577 + PB1D10 SINE Alu 1 106 -11 4 1891 217 341 35 43 chr1 171294974 171295115 -25900317 - L3 LINE CR1 -1106 3383 3244 4 1891 219 116 23 23 chr1 171297030 171297074 -25898358 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1891 191 167 24 0 chr1 171297528 171297570 -25897862 + GA-rich Low_complexity Low_complexity 5 47 0 4 1891 794 298 180 0 chr1 171299005 171299321 -25896111 - MTE2b LTR MaLR -4 375 3 4 1891 208 428 55 40 chr1 171300547 171300800 -25894632 - L2 LINE L2 -529 2890 2634 4 1891 296 333 9 9 chr1 171300842 171300957 -25894475 - MER67A LTR ERV1 -412 131 17 4 1891 1349 146 0 62 chr1 171301059 171301300 -25894132 - URR1A DNA MER1_type 0 226 1 4 1891 22 0 0 0 chr1 171301477 171301499 -25893933 + AT_rich Low_complexity Low_complexity 1 22 0 4 1891 284 258 93 37 chr1 171302296 171302457 -25892975 - Lx8 LINE L1 -1555 5918 5749 4 1891 328 305 110 7 chr1 171302450 171302605 -25892827 + L1M5 LINE L1 2612 2782 -3364 4 1891 443 284 205 0 chr1 171302768 171302895 -25892537 + RSINE1 SINE B4 13 165 0 4 1891 453 294 152 13 chr1 171302901 171303587 -25891845 + L1M5 LINE L1 2942 3722 -2424 4 1891 838 315 39 56 chr1 171303715 171304075 -25891357 - MT2A LTR ERVL -105 428 75 4 1891 263 276 108 54 chr1 171304009 171304139 -25891293 - MTE2a LTR MaLR -242 137 1 4 1891 848 111 7 0 chr1 171304273 171304408 -25891024 + (TAGA)n Simple_repeat Simple_repeat 1 136 0 4 1891 596 14 14 0 chr1 171304440 171304513 -25890919 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1891 572 270 149 75 chr1 171304563 171304831 -25890601 + B4A SINE B4 5 292 0 4 1891 221 75 0 24 chr1 171305368 171305409 -25890023 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 4 1891 496 339 80 46 chr1 171305410 171305673 -25889759 + B4 SINE B4 7 278 -14 4 1891 534 31 0 0 chr1 171305680 171305744 -25889688 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1891 262 266 38 0 chr1 171305783 171305862 -25889570 - Lx7 LINE L1 0 7696 7615 4 1891 350 293 136 30 chr1 171306028 171306197 -25889235 - MLT1E2 LTR MaLR -83 544 358 4 1891 992 77 7 0 chr1 171306300 171306443 -25888989 + (TC)n Simple_repeat Simple_repeat 1 144 0 4 1891 21 0 0 0 chr1 171306443 171306464 -25888968 + AT_rich Low_complexity Low_complexity 1 21 0 4 1891 3274 183 16 11 chr1 171306485 171307049 -25888383 - Lx5 LINE L1 -95 6955 6389 4 1891 585 0 0 0 chr1 171307187 171307252 -25888180 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1891 245 274 0 87 chr1 171307337 171307441 -25887991 - L1M2 LINE L1 -3795 3047 2953 4 1891 456 246 118 60 chr1 171307957 171308251 -25887181 - L1M2 LINE L1 -4167 2682 2113 4 1891 433 294 77 52 chr1 171308458 171308745 -25886687 + L1ME2 LINE L1 3366 3659 -2487 4 1891 358 306 17 9 chr1 171308791 171309011 -25886421 + L1ME2 LINE L1 5409 5644 -520 4 1891 260 338 27 34 chr1 171309148 171309295 -25886137 + L1ME2 LINE L1 5910 6055 -109 4 1892 486 0 0 0 chr1 171311312 171311366 -25884066 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 4 1892 5663 55 0 7 chr1 171311414 171312116 -25883316 + L1Md_F2 LINE L1 5886 6582 0 4 1892 302 0 26 0 chr1 171312341 171312379 -25883053 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1892 522 0 0 0 chr1 171312379 171312436 -25882996 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1892 25 0 0 0 chr1 171312544 171312569 -25882863 + AT_rich Low_complexity Low_complexity 1 25 0 4 1892 383 56 19 0 chr1 171313764 171313818 -25881614 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1892 22 0 0 0 chr1 171314340 171314362 -25881070 + AT_rich Low_complexity Low_complexity 1 22 0 4 1892 740 124 24 0 chr1 171314465 171314634 -25880798 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1892 363 98 0 0 chr1 171316435 171316496 -25878936 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1892 665 63 11 0 chr1 171316513 171316608 -25878824 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1892 396 0 0 0 chr1 171317523 171317567 -25877865 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 4 1892 528 111 0 0 chr1 171317634 171317715 -25877717 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1892 324 0 0 0 chr1 171318498 171318534 -25876898 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1892 267 31 0 0 chr1 171319379 171319411 -25876021 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 4 1892 846 202 0 0 chr1 171319413 171319591 -25875841 + GA-rich Low_complexity Low_complexity 3 180 0 4 1892 1167 117 0 0 chr1 171319592 171319772 -25875660 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1892 300 219 239 37 chr1 171319773 171319882 -25875550 + RSINE1 SINE B4 35 165 0 4 1892 552 15 0 0 chr1 171322114 171322179 -25873253 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1892 419 356 48 0 chr1 171323140 171323328 -25872104 + MIRb SINE MIR 16 212 -56 4 1892 21 82 0 0 chr1 171323587 171323636 -25871796 + AT_rich Low_complexity Low_complexity 1 49 0 4 1892 1167 75 0 7 chr1 171324951 171325099 -25870333 + B1_Mus1 SINE Alu 1 147 -1 4 1892 216 67 0 0 chr1 171325147 171325177 -25870255 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1892 520 317 6 0 chr1 171325178 171325345 -25870087 + (TATG)n Simple_repeat Simple_repeat 4 171 0 4 1892 319 264 6 6 chr1 171325349 171325517 -25869915 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1892 272 282 6 0 chr1 171325536 171325722 -25869710 + (TG)n Simple_repeat Simple_repeat 1 187 0 4 1892 456 250 24 16 chr1 171327564 171327690 -25867742 - RSINE1 SINE B4 -36 129 3 4 1892 432 263 105 33 chr1 171328040 171328279 -25867153 + L1MB5 LINE L1 5924 6169 -15 5 1892 1071 112 0 0 chr1 171328326 171328487 -25866945 + (TTC)n Simple_repeat Simple_repeat 2 162 0 5 1892 513 244 43 36 chr1 171328744 171328884 -25866548 - B1F SINE Alu -3 146 6 5 1892 360 319 133 35 chr1 171328907 171329386 -25866046 + MLT1F1 LTR MaLR 5 565 -4 5 1892 420 221 104 37 chr1 171329530 171329694 -25865738 - L1ME2z LINE L1 -31 6413 6239 5 1892 191 194 0 0 chr1 171329955 171329991 -25865441 + L2c LINE L2 3338 3373 -14 5 1892 22 0 0 0 chr1 171331749 171331771 -25863661 + AT_rich Low_complexity Low_complexity 1 22 0 5 1892 21 57 0 0 chr1 171332470 171332505 -25862927 + AT_rich Low_complexity Low_complexity 1 35 0 5 1892 381 95 0 0 chr1 171333363 171333426 -25862006 + (CTTG)n Simple_repeat Simple_repeat 1 63 0 5 1892 204 264 8 60 chr1 171333922 171334055 -25861377 + T-rich Low_complexity Low_complexity 1 126 0 5 1892 849 228 34 10 chr1 171336153 171336357 -25859075 + B3 SINE B2 3 211 -5 5 1892 203 0 37 0 chr1 171336361 171336388 -25859044 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1892 504 0 0 0 chr1 171337169 171337225 -25858207 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1892 597 304 32 26 chr1 171337247 171337436 -25857996 - MER63A DNA AcHobo -18 192 3 5 1892 189 0 0 0 chr1 171338642 171338663 -25856769 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1892 540 0 0 0 chr1 171338663 171338722 -25856710 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1892 318 253 21 10 chr1 171338854 171338950 -25856482 + CT-rich Low_complexity Low_complexity 3 99 0 5 1892 366 331 24 24 chr1 171338955 171339082 -25856350 - ID_B1 SINE B4 -7 217 91 5 1892 323 274 12 0 chr1 171339782 171339866 -25855566 + B4A SINE B4 4 88 -204 5 1892 473 303 7 53 chr1 171340106 171340172 -25855260 + B4A SINE B4 150 215 -77 5 1892 675 0 0 0 chr1 171340172 171340247 -25855185 + (TAAAA)n Simple_repeat Simple_repeat 4 78 0 5 1892 473 303 7 53 chr1 171340247 171340303 -25855129 + B4A SINE B4 216 271 -21 5 1892 252 86 0 0 chr1 171340303 171340338 -25855094 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1892 473 303 7 53 chr1 171340338 171340364 -25855068 + B4A SINE B4 272 292 0 5 1892 297 135 0 0 chr1 171340879 171340931 -25854501 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1892 439 339 15 35 chr1 171340948 171341147 -25854285 - B4A SINE B4 -4 288 94 5 1892 578 280 39 34 chr1 171341263 171341470 -25853962 - B3 SINE B2 -8 208 1 5 1892 199 316 54 67 chr1 171343211 171343360 -25852072 - MIRb SINE MIR -34 234 88 5 1892 183 100 0 0 chr1 171343522 171343552 -25851880 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1892 182 118 0 29 chr1 171344047 171344082 -25851350 + (AGGGGG)n Simple_repeat Simple_repeat 2 35 0 5 1892 203 313 36 0 chr1 171346832 171346915 -25848517 + MER5B DNA MER1_type 1 86 -92 5 1892 513 47 0 0 chr1 171348758 171348822 -25846610 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1892 1053 294 84 21 chr1 171350408 171350742 -25844690 + MTEa LTR MaLR 18 372 -7 5 1892 235 161 87 54 chr1 171351191 171351283 -25844149 + Lx9 LINE L1 7550 7644 0 5 1892 205 286 117 0 chr1 171351681 171351758 -25843674 - MIR SINE MIR -122 140 55 5 1892 1346 28 0 22 chr1 171352179 171352362 -25843070 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1892 240 243 0 0 chr1 171352381 171352455 -25842977 + CT-rich Low_complexity Low_complexity 3 76 0 5 1892 1229 180 226 3 chr1 171353205 171353511 -25841921 - ORR1D1 LTR MaLR 0 374 1 5 1892 864 96 0 0 chr1 171354409 171354555 -25840877 + (GA)n Simple_repeat Simple_repeat 2 147 0 5 1892 1620 174 96 72 chr1 171354774 171355202 -25840230 + RMER10A LTR ERVL 4 441 -1 5 1892 521 130 22 0 chr1 171355202 171355294 -25840138 + CT-rich Low_complexity Low_complexity 3 96 0 5 1892 3140 90 2 5 chr1 171355573 171356008 -25839424 + L1_Mus4 LINE L1 6203 6636 0 5 1892 36051 46 0 3 chr1 171356028 171361281 -25834151 + L1Md_T LINE L1 256 5589 -297 5 1892 8670 31 0 0 chr1 171361281 171362277 -25833155 + L1Md_T LINE L1 5590 6585 0 5 1892 633 27 0 0 chr1 171362307 171362382 -25833050 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 5 1892 492 308 73 43 chr1 171362509 171363161 -25832271 + L1MEc LINE L1 1478 2188 -4212 5 1892 889 222 11 6 chr1 171363161 171363342 -25832090 + B3A SINE B2 1 182 -16 5 1892 699 326 100 26 chr1 171363342 171364072 -25831360 + L1MEc LINE L1 2189 2968 -3351 5 1892 307 269 0 49 chr1 171364238 171364320 -25831112 + BC1_Mm scRNA scRNA 7 84 -68 5 1892 941 268 5 14 chr1 171364999 171365215 -25830217 - B3 SINE B2 -2 214 1 5 1892 680 189 27 20 chr1 171365409 171365555 -25829877 + B1_Mur3 SINE Alu 3 149 0 5 1892 1065 134 0 0 chr1 171365639 171365811 -25829621 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 5 1892 855 149 11 22 chr1 171365817 171365995 -25829437 + A-rich Low_complexity Low_complexity 3 178 0 5 1892 504 41 10 0 chr1 171365985 171366085 -25829347 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 5 1892 279 299 36 45 chr1 171366104 171366216 -25829216 + MER74B LTR ERVL 26 136 -422 5 1892 1741 293 76 18 chr1 171366370 171366972 -25828460 + Lx9 LINE L1 6329 6965 -679 5 1892 316 242 44 0 chr1 171367030 171367121 -25828311 + MER74B LTR ERVL 190 284 -338 5 1892 342 266 21 11 chr1 171367932 171368027 -25827405 - RMER5 LTR ERV1 -30 504 409 5 1892 366 236 105 41 chr1 171368029 171368201 -25827231 - RLTR41 LTR ERV1 0 446 264 5 1892 887 292 52 35 chr1 171368530 171368931 -25826501 - RMER5 LTR ERV1 -94 440 33 5 1892 545 332 70 33 chr1 171370948 171371219 -25824213 + B4A SINE B4 6 286 -6 5 1892 1301 245 35 18 chr1 171372876 171373217 -25822215 + ORR1E LTR MaLR 3 349 -10 5 1892 381 268 21 1 chr1 171373382 171373495 -25821937 - ORR1D2 LTR MaLR -4 370 255 5 1892 383 194 42 31 chr1 171373496 171373588 -25821844 + ORR1D2 LTR MaLR 1 93 -277 5 1892 2753 21 0 0 chr1 171373588 171373926 -25821506 + ORR1A0 LTR MaLR 1 338 -8 5 1892 415 215 72 66 chr1 171373929 171374149 -25821283 + ORR1D2 LTR MaLR 88 370 0 5 1892 1779 158 80 59 chr1 171374286 171374676 -25820756 - RMER10B LTR ERVL 0 398 1 5 1892 461 326 71 108 chr1 171374826 171375014 -25820418 - MLT1E3 LTR MaLR -193 431 258 5 1892 1157 68 0 13 chr1 171375014 171375163 -25820269 - B1_Mus1 SINE Alu 0 148 2 5 1892 461 326 71 108 chr1 171375163 171375355 -25820077 - MLT1E3 LTR MaLR -367 257 65 5 1892 284 289 11 0 chr1 171376378 171376468 -25818964 + MLT1A LTR MaLR 1 91 -283 5 1892 399 235 117 109 chr1 171376868 171377077 -25818355 - RMER12 LTR ERVK -123 1199 987 5 1892 477 50 0 0 chr1 171377077 171377137 -25818295 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1892 399 235 117 109 chr1 171377137 171377166 -25818266 - RMER12 LTR ERVK -336 986 959 5 1892 969 274 87 79 chr1 171377238 171377703 -25817729 - RMER12 LTR ERVK -1089 759 313 5 1892 1224 48 0 0 chr1 171377703 171377848 -25817584 - B1_Mm SINE Alu -2 145 1 5 1892 1357 183 32 18 chr1 171377848 171378160 -25817272 - RMER12 LTR ERVK -1536 312 1 5 1892 1001 41 20 52 chr1 171380275 171380428 -25815004 + L1Md_F3 LINE L1 6436 6583 -1 5 1892 220 180 40 0 chr1 171380445 171380495 -25814937 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 5 1892 352 239 35 12 chr1 171381862 171381968 -25813464 + B4A SINE B4 49 163 -129 5 1892 210 319 15 118 chr1 171381968 171381996 -25813436 + B3A SINE B2 49 168 -30 5 1892 313 22 43 0 chr1 171382060 171382106 -25813326 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1892 531 0 0 0 chr1 171383423 171383482 -25811950 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1892 1977 237 54 94 chr1 171384259 171384884 -25810548 - Lx8 LINE L1 -123 7350 6751 5 1892 3171 53 15 2 chr1 171385085 171385480 -25809952 - MTB LTR MaLR 0 400 1 5 1892 333 82 0 0 chr1 171385764 171385813 -25809619 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1892 457 265 207 13 chr1 171386589 171386890 -25808542 + MTEb LTR MaLR 4 378 -1 5 1892 292 309 53 47 chr1 171387015 171387221 -25808211 - MIRc SINE MIR -56 212 4 5 1892 233 228 88 0 chr1 171387285 171387342 -25808090 + B4A SINE B4 84 145 -147 5 1892 423 290 40 0 chr1 171387292 171387416 -25808016 + B1F SINE Alu 11 139 -10 5 1892 753 12 0 0 chr1 171387416 171387502 -25807930 + (GAA)n Simple_repeat Simple_repeat 2 87 0 5 1892 271 343 0 0 chr1 171387776 171387846 -25807586 - B4 SINE B4 0 292 223 5 1892 21 0 0 0 chr1 171388374 171388395 -25807037 + AT_rich Low_complexity Low_complexity 1 21 0 5 1892 305 24 24 0 chr1 171388955 171388997 -25806435 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 1892 339 113 0 0 chr1 171389965 171390018 -25805414 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1892 23 33 0 0 chr1 171391044 171391074 -25804358 + AT_rich Low_complexity Low_complexity 1 30 0 5 1892 906 144 293 0 chr1 171391767 171391941 -25803491 - URR1B DNA MER1_type 0 225 1 5 1892 464 298 128 21 chr1 171392010 171392253 -25803179 - B4A SINE B4 -22 270 2 5 1892 388 263 160 26 chr1 171393577 171393733 -25801699 + B4A SINE B4 2 178 -114 5 1892 21 0 0 0 chr1 171394018 171394039 -25801393 + AT_rich Low_complexity Low_complexity 1 21 0 5 1892 22 56 0 0 chr1 171394276 171394312 -25801120 + AT_rich Low_complexity Low_complexity 1 36 0 5 1892 783 59 0 0 chr1 171395495 171395596 -25799836 + (GA)n Simple_repeat Simple_repeat 1 101 0 5 1892 320 219 92 42 chr1 171397074 171397193 -25798239 - MER5A1 DNA MER1_type -2 164 40 5 1892 241 163 0 0 chr1 171397578 171397621 -25797811 + L2c LINE L2 3345 3387 0 5 1892 630 266 0 48 chr1 171398851 171399017 -25796415 + RSINE1 SINE B4 4 161 -4 5 1892 743 221 86 9 chr1 171400852 171401062 -25794370 + L1_Mur3 LINE L1 3640 3865 -2015 5 1892 236 136 0 22 chr1 171401767 171401812 -25793620 + Lx8 LINE L1 5885 5928 -1545 5 1892 516 310 72 17 chr1 171401930 171402166 -25793266 - MLT1E1A LTR MaLR -429 251 3 5 1892 235 388 10 0 chr1 171403082 171403185 -25792247 + MLT1J2 LTR MaLR 1 104 -344 5 1892 1908 268 68 78 chr1 171403205 171403391 -25792041 + RCHARR1 DNA MER1_type 3 146 -828 5 1892 1207 55 0 0 chr1 171403391 171403537 -25791895 - B1_Mus1 SINE Alu 0 148 3 5 1892 1908 268 68 78 chr1 171403537 171404132 -25791300 + RCHARR1 DNA MER1_type 147 776 -198 5 1892 1222 209 101 33 chr1 171404132 171404468 -25790964 - ORR1D1 LTR MaLR 0 374 16 6 1892 388 244 102 12 chr1 171404455 171404621 -25790811 + RCHARR1 DNA MER1_type 778 958 -16 5 1892 973 289 55 28 chr1 171406097 171406460 -25788972 - MTEa LTR MaLR -4 375 3 6 1892 617 314 27 61 chr1 171406474 171406769 -25788663 + B4A SINE B4 8 292 0 6 1892 453 158 0 0 chr1 171406769 171406851 -25788581 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1892 217 320 0 0 chr1 171406862 171406937 -25788495 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1892 207 0 0 0 chr1 171406977 171407000 -25788432 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1892 234 0 0 0 chr1 171408677 171408703 -25786729 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1892 540 258 43 0 chr1 171408888 171409051 -25786381 - L1_Mur3 LINE L1 -1724 4156 3987 6 1892 188 111 28 0 chr1 171409379 171409415 -25786017 + (AGGGGG)n Simple_repeat Simple_repeat 2 38 0 6 1892 180 0 0 0 chr1 171409919 171409939 -25785493 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1892 265 318 0 1 chr1 171410423 171410502 -25784930 - BC1_Mm scRNA scRNA -67 85 7 6 1892 984 178 6 6 chr1 171411040 171411215 -25784217 - Lx9 LINE L1 -223 7421 7247 6 1892 276 77 0 0 chr1 171411215 171411254 -25784178 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1892 412 164 81 9 chr1 171411260 171411371 -25784061 + Lx9 LINE L1 7515 7633 -11 6 1892 289 203 0 30 chr1 171411959 171412025 -25783407 + L1M5 LINE L1 5581 5644 -480 6 1892 378 254 57 16 chr1 171412257 171412381 -25783051 - MLT1H LTR MaLR 0 549 421 6 1892 368 293 164 13 chr1 171413278 171413430 -25782002 + B4 SINE B4 115 289 -3 6 1892 320 320 0 0 chr1 171413455 171413558 -25781874 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1892 531 324 45 36 chr1 171413765 171413989 -25781443 - L5 LINE RTE -1010 1255 1030 6 1892 622 99 50 0 chr1 171414253 171414354 -25781078 + B2_Mm2 SINE B2 2 107 -88 6 1892 226 163 0 23 chr1 171414680 171414724 -25780708 + CT-rich Low_complexity Low_complexity 2 44 0 6 1892 565 243 52 0 chr1 171414725 171414861 -25780571 - ID_B1 SINE B4 -1 223 81 6 1892 586 186 6 34 chr1 171416081 171416259 -25779173 + (TATG)n Simple_repeat Simple_repeat 2 174 0 6 1892 24 0 0 0 chr1 171417375 171417399 -25778033 + AT_rich Low_complexity Low_complexity 1 24 0 6 1892 1835 175 69 14 chr1 171418711 171419059 -25776373 - ORR1B2 LTR MaLR 0 367 1 6 1892 459 348 43 14 chr1 171419099 171419306 -25776126 - MER58A DNA MER1_type -11 213 1 6 1892 525 286 18 53 chr1 171419524 171419694 -25775738 - RSINE1 SINE B4 0 165 2 6 1892 766 323 53 20 chr1 171421765 171422106 -25773326 + MLT1F1 LTR MaLR 218 569 0 6 1892 593 0 0 27 chr1 171422198 171422272 -25773160 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 6 1892 223 316 191 39 chr1 171422495 171422673 -25772759 - B4A SINE B4 -87 205 1 6 1892 2157 163 30 27 chr1 171423978 171424382 -25771050 - MTB_Mm LTR MaLR 0 407 3 6 1892 184 182 0 0 chr1 171424421 171424454 -25770978 + MER5A DNA MER1_type 148 180 -9 6 1892 251 265 118 0 chr1 171424991 171425059 -25770373 + B4A SINE B4 5 80 -212 6 1892 284 111 37 12 chr1 171425061 171425143 -25770289 + T-rich Low_complexity Low_complexity 4 87 0 6 1892 226 254 13 90 chr1 171425158 171425236 -25770196 + B4 SINE B4 221 292 0 6 1892 183 80 0 0 chr1 171426629 171426654 -25768778 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1892 510 288 15 0 chr1 171426869 171427001 -25768431 + RSINE1 SINE B4 3 136 -29 6 1892 754 232 32 0 chr1 171427032 171427187 -25768245 + B3A SINE B2 1 160 -38 6 1892 277 349 90 8 chr1 171427268 171427401 -25768031 - MER119 DNA MER1_type -433 150 7 6 1892 28 0 0 0 chr1 171427640 171427668 -25767764 + AT_rich Low_complexity Low_complexity 1 28 0 6 1892 4507 54 4 0 chr1 171427688 171428239 -25767193 - L1_Mus1 LINE L1 -391 6176 5624 6 1892 1132 71 0 0 chr1 171429900 171430040 -25765392 + B1_Mus1 SINE Alu 1 140 -8 6 1892 811 193 22 0 chr1 171430310 171430445 -25764987 + B1_Mus2 SINE Alu 1 138 -9 6 1892 681 284 113 23 chr1 171430634 171430987 -25764445 - L1_Rod LINE L1 -3 5844 5460 6 1892 333 298 31 46 chr1 171431003 171431133 -25764299 + RSINE1 SINE B4 29 156 -9 6 1892 504 0 0 0 chr1 171431152 171431208 -25764224 + (TTAA)n Simple_repeat Simple_repeat 3 58 0 6 1892 811 335 76 22 chr1 171431227 171431981 -25763451 - L1_Mur3 LINE L1 -401 5479 4721 6 1892 204 366 83 24 chr1 171432976 171433228 -25762204 + L3 LINE CR1 3613 3879 -610 6 1892 391 202 38 0 chr1 171434957 171435036 -25760396 - ID2 SINE ID 0 83 2 6 1892 218 116 23 0 chr1 171435518 171435561 -25759871 + (CAAT)n Simple_repeat Simple_repeat 4 47 0 6 1892 245 135 0 19 chr1 171435928 171435981 -25759451 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 6 1892 235 231 0 0 chr1 171435984 171436049 -25759383 + L1ME2z LINE L1 6270 6334 -110 6 1892 597 94 0 0 chr1 171436365 171436450 -25758982 + (GGA)n Simple_repeat Simple_repeat 2 86 0 6 1892 891 67 0 0 chr1 171436466 171436585 -25758847 + (GA)n Simple_repeat Simple_repeat 1 119 0 6 1892 848 64 184 0 chr1 171437171 171437296 -25758136 + B1_Mus1 SINE Alu 1 148 0 6 1892 180 125 0 0 chr1 171437687 171437719 -25757713 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 6 1892 775 247 66 0 chr1 171437721 171437903 -25757529 - B3 SINE B2 -15 201 8 6 1892 255 31 0 0 chr1 171438290 171438322 -25757110 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1892 1217 212 129 51 chr1 171438513 171438561 -25756871 - MTD LTR MaLR -14 405 362 6 1892 1040 195 40 0 chr1 171438561 171438761 -25756671 + B3 SINE B2 5 212 -4 6 1892 1217 212 129 51 chr1 171438761 171439084 -25756348 - MTD LTR MaLR -58 361 5 6 1892 319 269 0 0 chr1 171439171 171439249 -25756183 + PB1D10 SINE Alu 24 101 -16 6 1892 22 35 0 0 chr1 171439975 171440004 -25755428 + AT_rich Low_complexity Low_complexity 1 29 0 6 1892 250 26 51 0 chr1 171440005 171440044 -25755388 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 6 1892 1186 49 0 0 chr1 171440046 171440188 -25755244 + B1_Mus2 SINE Alu 1 142 -5 6 1892 222 37 0 0 chr1 171440192 171440219 -25755213 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1892 218 271 0 0 chr1 171442000 171442070 -25753362 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1893 278 201 31 45 chr1 171442742 171442840 -25752592 + MTEb LTR MaLR 251 347 -32 6 1893 630 183 13 38 chr1 171442857 171442879 -25752553 + ID_B1 SINE B4 70 224 0 6 1893 1006 51 7 0 chr1 171442879 171443016 -25752416 + B1_Mus1 SINE Alu 11 148 0 6 1893 289 250 208 46 chr1 171443033 171443293 -25752139 - MER119 DNA MER1_type -137 446 145 6 1893 1276 34 0 27 chr1 171443754 171443937 -25751495 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 6 1893 288 70 0 0 chr1 171443937 171443980 -25751452 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 6 1893 680 287 19 63 chr1 171445250 171445521 -25749911 + B4A SINE B4 34 292 0 6 1893 210 150 0 0 chr1 171446005 171446045 -25749387 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1893 842 178 34 6 chr1 171448979 171449154 -25746278 + B3A SINE B2 4 183 -15 6 1893 21 0 0 0 chr1 171449209 171449230 -25746202 + AT_rich Low_complexity Low_complexity 1 21 0 6 1893 253 256 70 2 chr1 171449285 171449392 -25746040 + L1MEf LINE L1 2096 2207 -3939 6 1893 862 280 165 15 chr1 171449927 171450612 -25744820 - L1MC1 LINE L1 -12 6321 5531 6 1893 827 212 85 0 chr1 171451043 171451232 -25744200 + B3 SINE B2 1 205 -11 6 1893 1056 282 128 39 chr1 171451244 171451938 -25743494 + L1ME1 LINE L1 5297 6052 -127 6 1893 26 30 0 0 chr1 171455087 171455120 -25740312 + AT_rich Low_complexity Low_complexity 1 33 0 6 1893 422 280 23 23 chr1 171455740 171455868 -25739564 + ID_B1 SINE B4 88 215 -9 6 1893 210 37 0 0 chr1 171455881 171455908 -25739524 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1893 363 243 170 9 chr1 171456495 171456607 -25738825 + MER20 DNA MER1_type 23 152 -67 6 1893 255 322 129 31 chr1 171456783 171457132 -25738300 - L3 LINE CR1 -46 4443 4061 6 1893 530 265 148 36 chr1 171457256 171457534 -25737898 - MER21B LTR ERV1 -158 705 397 6 1893 350 333 95 0 chr1 171457671 171457839 -25737593 - MER21B LTR ERV1 -672 191 8 6 1893 401 77 31 0 chr1 171457983 171458048 -25737384 + (TTTC)n Simple_repeat Simple_repeat 4 70 0 6 1893 1151 69 14 0 chr1 171458145 171458290 -25737142 + B1_Mus1 SINE Alu 2 148 0 6 1893 213 154 0 0 chr1 171458296 171458335 -25737097 + GA-rich Low_complexity Low_complexity 3 41 0 6 1893 395 271 142 93 chr1 171458360 171458543 -25736889 - B4 SINE B4 -98 194 3 6 1893 1237 20 0 13 chr1 171459062 171459211 -25736221 + B1_Mus2 SINE Alu 1 147 0 6 1893 189 0 0 0 chr1 171459211 171459232 -25736200 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1893 243 0 0 0 chr1 171460032 171460059 -25735373 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1893 6117 56 20 3 chr1 171460506 171461290 -25734142 + Lx3_Mus LINE L1 6211 7008 -1 6 1893 21 0 0 0 chr1 171461291 171461312 -25734120 + AT_rich Low_complexity Low_complexity 1 21 0 6 1893 21 36 0 0 chr1 171462559 171462587 -25732845 + AT_rich Low_complexity Low_complexity 1 28 0 6 1893 513 207 44 146 chr1 171463116 171463274 -25732158 + B1_Mur1 SINE Alu 8 149 0 6 1893 34 42 0 0 chr1 171463474 171463522 -25731910 + AT_rich Low_complexity Low_complexity 1 48 0 6 1893 30 0 0 0 chr1 171463661 171463691 -25731741 + AT_rich Low_complexity Low_complexity 1 30 0 6 1893 303 278 4 0 chr1 171464375 171464462 -25730970 + PB1D10 SINE Alu 17 106 -14 6 1893 2122 106 122 3 chr1 171464617 171464994 -25730438 - MusHAL1 LINE L1 -1789 923 502 6 1893 1050 81 7 0 chr1 171465020 171465168 -25730264 - B2_Mm1t SINE B2 -18 175 27 6 1893 8679 24 0 0 chr1 171465168 171466492 -25728940 - L1Md_A LINE L1 -4 6578 5255 7 1893 303 224 0 0 chr1 171466492 171466550 -25728882 - B3A SINE B2 -139 59 2 7 1893 5189 71 30 1 chr1 171466550 171467636 -25727796 - L1VL2 LINE L1 -2196 1419 308 7 1893 290 279 170 9 chr1 171467668 171467780 -25727652 + ID_B1 SINE B4 85 214 -10 7 1893 303 319 25 0 chr1 171467905 171468024 -25727408 - MLT1A LTR MaLR -71 303 182 7 1893 675 203 41 20 chr1 171468538 171468684 -25726748 + B3A SINE B2 1 149 -49 7 1893 1839 212 45 7 chr1 171469011 171469415 -25726017 + MTD LTR MaLR 1 419 0 7 1893 1130 58 0 0 chr1 171469493 171469630 -25725802 + B1_Mus2 SINE Alu 2 138 -9 7 1893 186 43 0 0 chr1 171469630 171469653 -25725779 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 1893 723 280 170 17 chr1 171469738 171470156 -25725276 - RMER5 LTR ERV1 0 534 53 7 1893 355 247 22 0 chr1 171470197 171470286 -25725146 + ID_B1 SINE B4 113 203 -21 7 1893 535 286 63 31 chr1 171471059 171471250 -25724182 - B3A SINE B2 -1 197 1 7 1893 2951 54 72 20 chr1 171471522 171471922 -25723510 + BGLII LTR ERVK 1 421 0 7 1893 691 299 23 0 chr1 171471950 171472124 -25723308 - B4 SINE B4 -114 178 1 7 1893 3016 21 0 0 chr1 171472550 171472887 -25722545 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1893 6142 66 53 43 chr1 171472887 171473762 -25721670 + IAPEz-int LTR ERVK 8 890 -5591 7 1893 44856 14 1 1 chr1 171473768 171478676 -25716756 + IAPEz-int LTR ERVK 1566 6473 -8 7 1893 3029 18 0 0 chr1 171478684 171479021 -25716411 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1893 816 273 52 49 chr1 171479021 171479239 -25716193 - MLT1C LTR MaLR -148 319 94 7 1893 3545 25 0 0 chr1 171479239 171479635 -25715797 + MTA_Mm LTR MaLR 1 396 0 7 1893 816 273 52 49 chr1 171479635 171479731 -25715701 - MLT1C LTR MaLR -374 93 4 7 1893 810 73 0 0 chr1 171480787 171480910 -25714522 + (GA)n Simple_repeat Simple_repeat 2 124 0 7 1893 285 229 83 0 chr1 171481465 171481561 -25713871 - B1F1 SINE Alu -16 133 30 7 1893 3903 186 78 29 chr1 171482034 171482779 -25712653 + RMER12 LTR ERVK 1 767 -555 7 1893 591 92 0 0 chr1 171482779 171482866 -25712566 + (TCCA)n Simple_repeat Simple_repeat 1 87 0 7 1893 3903 198 84 32 chr1 171482866 171483247 -25712185 + RMER12 LTR ERVK 768 1190 -132 7 1893 1164 74 0 0 chr1 171483287 171483435 -25711997 + B1_Mus1 SINE Alu 1 148 0 7 1893 21 0 0 0 chr1 171483544 171483565 -25711867 + AT_rich Low_complexity Low_complexity 1 21 0 7 1893 388 320 34 23 chr1 171483586 171483762 -25711670 + RMER12 LTR ERVK 1145 1322 0 7 1893 322 271 58 63 chr1 171484405 171484594 -25710838 - MER53 DNA hAT -2 191 4 7 1893 294 203 43 0 chr1 171485548 171485617 -25709815 + ID4_ SINE ID 7 78 -5 7 1893 709 239 50 71 chr1 171486079 171486270 -25709162 + B3 SINE B2 1 188 -28 7 1893 333 0 0 0 chr1 171486270 171486307 -25709125 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1893 1117 68 0 13 chr1 171488083 171488232 -25707200 + B1_Mus1 SINE Alu 2 148 0 7 1893 280 309 108 32 chr1 171489463 171489620 -25705812 - Lx8 LINE L1 -73 7400 7232 7 1893 226 107 36 0 chr1 171489625 171489681 -25705751 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 7 1893 284 269 0 13 chr1 171489708 171489787 -25705645 - Lx7 LINE L1 -642 7054 6977 7 1893 428 244 11 7 chr1 171490643 171491022 -25704410 + (CA)n Simple_repeat Simple_repeat 1 380 0 7 1893 261 0 0 0 chr1 171491022 171491051 -25704381 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1893 375 229 0 3 chr1 171491051 171491193 -25704239 + (CA)n Simple_repeat Simple_repeat 1 141 0 7 1893 442 206 153 67 chr1 171491569 171491772 -25703660 - MER31-int LTR ERV1 -522 4414 4248 7 1893 255 228 0 0 chr1 171491874 171491953 -25703479 - MER44B DNA MER2_type -121 429 351 7 1893 355 219 0 0 chr1 171492093 171492166 -25703266 + B3 SINE B2 1 73 -143 7 1893 1938 188 85 39 chr1 171492167 171492679 -25702753 - RMER16 LTR ERVK 0 533 27 7 1893 279 260 227 10 chr1 171492824 171492921 -25702511 + RSINE1 SINE B4 8 125 -40 7 1893 1554 12 0 0 chr1 171492921 171493176 -25702256 + (TCTCCC)n Simple_repeat Simple_repeat 1 255 0 7 1893 1192 62 0 0 chr1 171493338 171493483 -25701949 + B1_Mus1 SINE Alu 1 145 -3 7 1893 783 102 0 0 chr1 171493483 171493620 -25701812 + (GA)n Simple_repeat Simple_repeat 2 138 0 7 1893 256 376 8 0 chr1 171494187 171494312 -25701120 + MIR SINE MIR 137 262 0 7 1893 4745 211 39 1 chr1 171494474 171495395 -25700037 - Lx5 LINE L1 -4 7046 6091 7 1893 1041 234 155 19 chr1 171496002 171496429 -25699003 - MER31A LTR ERV1 0 485 1 7 1893 290 302 16 72 chr1 171497153 171497220 -25698212 - ORR1E LTR MaLR -8 371 307 7 1893 531 0 0 0 chr1 171497220 171497279 -25698153 + (ACTG)n Simple_repeat Simple_repeat 2 60 0 7 1893 290 302 16 72 chr1 171497279 171497336 -25698096 - ORR1E LTR MaLR -73 306 254 7 1893 452 292 75 102 chr1 171497340 171497595 -25697837 - ORR1E LTR MaLR -82 288 41 7 1893 1187 36 0 0 chr1 171498585 171498725 -25696707 + B1_Mus1 SINE Alu 1 140 -8 7 1893 210 37 0 0 chr1 171498725 171498752 -25696680 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1893 466 350 66 26 chr1 171500383 171500609 -25694823 - MER21B LTR ERV1 -108 755 521 1 1893 259 385 38 19 chr1 171500740 171500846 -25694586 - MER21B LTR ERV1 -632 231 124 1 1893 294 79 0 0 chr1 171501131 171501169 -25694263 + B2_Mm2 SINE B2 2 39 -156 2 1893 4319 148 0 3 chr1 171501173 171501914 -25693518 - L1_Mus4 LINE L1 -586 5297 4559 3 1893 7285 82 25 2 chr1 171501907 171503172 -25692260 + L1_Mus4 LINE L1 5337 6621 -15 3 1893 1131 102 24 0 chr1 171503179 171503345 -25692087 + B2_Mm2 SINE B2 25 194 -1 2 1893 1516 266 98 39 chr1 171503365 171504009 -25691423 + Lx8 LINE L1 6617 7298 -175 4 1893 309 26 0 0 chr1 171504180 171504218 -25691214 + (CAA)n Simple_repeat Simple_repeat 1 38 0 5 1893 477 286 152 17 chr1 171504389 171504791 -25690641 + L1MB8 LINE L1 5398 5853 -325 6 1893 346 304 116 92 chr1 171505165 171505502 -25689930 + L1MB8 LINE L1 5840 6184 0 6 1893 293 221 14 14 chr1 171506159 171506228 -25689204 - B1F1 SINE Alu -2 147 79 7 1893 405 264 18 36 chr1 171507378 171507488 -25687944 - PB1D10 SINE Alu -1 116 9 8 1893 194 382 0 0 chr1 171508479 171508547 -25686885 + MIR3 SINE MIR 110 177 -31 9 1893 554 26 0 38 chr1 171508912 171508972 -25686460 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1893 591 15 0 0 chr1 171508972 171509040 -25686392 + (GGA)n Simple_repeat Simple_repeat 2 69 0 1 1893 486 0 0 0 chr1 171509041 171509095 -25686337 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 1 1893 554 26 0 38 chr1 171509095 171509111 -25686321 + (GA)n Simple_repeat Simple_repeat 1 14 0 1 1893 470 274 19 0 chr1 171509265 171509371 -25686061 + PB1D10 SINE Alu 3 110 -7 1 1893 398 20 0 19 chr1 171509372 171509424 -25686008 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 1 1893 204 330 104 26 chr1 171509781 171509896 -25685536 - MIRc SINE MIR -29 239 116 1 1893 515 254 71 0 chr1 171510288 171510414 -25685018 - ID_B1 SINE B4 0 224 90 1 1893 192 196 59 0 chr1 171511014 171511065 -25684367 + L3b LINE CR1 283 336 -146 1 1893 2501 125 58 0 chr1 171511173 171511572 -25683860 + Lx4A LINE L1 6516 6937 -121 1 1893 358 311 102 55 chr1 171512017 171512292 -25683140 + B4A SINE B4 1 288 -4 2 1893 411 21 0 0 chr1 171512304 171512352 -25683080 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1893 227 278 239 73 chr1 171513068 171513328 -25682104 + MamGypLTR1c LTR Gypsy 40 342 -461 2 1893 960 279 38 101 chr1 171513382 171513780 -25681652 + MTEa LTR MaLR 7 379 0 2 1893 262 394 56 108 chr1 171513808 171514150 -25681282 + MamGypLTR1c LTR Gypsy 337 660 -143 2 1893 221 129 5 0 chr1 171514376 171514422 -25681010 + MIR SINE MIR 65 111 -157 2 1893 327 25 0 0 chr1 171514422 171514462 -25680970 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1893 507 300 11 86 chr1 171515106 171515292 -25680140 + B4A SINE B4 2 173 -119 2 1893 2947 55 0 8 chr1 171517273 171517655 -25677777 + MTB LTR MaLR 1 379 -21 2 1893 414 321 6 81 chr1 171517928 171518101 -25677331 - B4A SINE B4 -130 162 3 2 1893 477 235 154 19 chr1 171518245 171518453 -25676979 + Lx7 LINE L1 7132 7367 -329 2 1893 271 0 0 49 chr1 171518464 171518505 -25676927 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1893 1233 48 0 0 chr1 171518527 171518674 -25676758 - B1_Mus2 SINE Alu 0 147 1 3 1893 7533 109 30 44 chr1 171519274 171519362 -25676070 - Lx2 LINE L1 -1 6996 6904 3 1893 189 0 0 0 chr1 171519362 171519383 -25676049 + (TCC)n Simple_repeat Simple_repeat 3 23 0 3 1893 7533 109 30 44 chr1 171519383 171520506 -25674926 - Lx2 LINE L1 -94 6903 5803 3 1893 1608 219 47 11 chr1 171520808 171521173 -25674259 - RLTR14 LTR ERV1 -4 378 1 3 1893 609 157 0 104 chr1 171522464 171522495 -25672937 - RMER4A LTR ERVK 0 466 437 3 1893 1106 96 0 0 chr1 171522495 171522641 -25672791 - B1_Mus1 SINE Alu -2 146 1 3 1893 609 157 0 104 chr1 171522641 171522744 -25672688 - RMER4A LTR ERVK -30 436 346 3 1893 292 216 155 10 chr1 171522745 171522806 -25672626 - RMER4A LTR ERVK -80 386 312 3 1893 239 0 32 0 chr1 171522806 171522837 -25672595 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1893 292 216 155 10 chr1 171522837 171522878 -25672554 - RMER4A LTR ERVK -155 311 270 3 1893 570 268 114 16 chr1 171522876 171523069 -25672363 - B4A SINE B4 -80 212 1 3 1893 238 269 132 3 chr1 171524401 171524501 -25670931 + PB1D10 SINE Alu 3 124 -3 3 1893 392 351 57 21 chr1 171524574 171524958 -25670474 + L1MD LINE L1 5292 5689 -670 4 1893 243 307 19 47 chr1 171525222 171525328 -25670104 - PB1D10 SINE Alu -13 104 2 4 1893 1571 199 103 105 chr1 171526292 171526826 -25668606 - RMER16 LTR ERVK 0 533 1 4 1893 237 75 0 0 chr1 171528261 171528297 -25667135 - MIR SINE MIR -56 152 116 4 1893 213 224 0 0 chr1 171528908 171528966 -25666466 + CT-rich Low_complexity Low_complexity 2 59 0 4 1893 456 72 0 0 chr1 171529221 171529290 -25666142 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 4 1893 224 216 40 0 chr1 171529862 171529936 -25665496 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1893 658 286 0 21 chr1 171530127 171530313 -25665119 - B3A SINE B2 -16 182 1 4 1893 1861 177 193 66 chr1 171530390 171531156 -25664276 - RMER6C LTR ERVK -4 716 1 4 1893 906 292 24 44 chr1 171531315 171531609 -25663823 + B4A SINE B4 1 288 -4 4 1893 585 28 0 0 chr1 171531804 171531875 -25663557 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1893 288 100 0 70 chr1 171534327 171534413 -25661019 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1893 359 158 55 0 chr1 171534626 171534753 -25660679 + (TCTA)n Simple_repeat Simple_repeat 3 136 0 5 1893 1337 240 32 47 chr1 171534935 171535315 -25660117 + ORR1D1 LTR MaLR 1 374 0 5 1893 247 302 0 0 chr1 171535384 171535447 -25659985 + RMER5 LTR ERV1 472 534 0 5 1893 1077 238 35 139 chr1 171535466 171535870 -25659562 + MTE2a LTR MaLR 1 362 -17 5 1893 507 316 41 29 chr1 171536187 171536529 -25658903 - L1M5 LINE L1 -342 5822 5477 5 1893 1136 126 68 0 chr1 171536884 171537091 -25658341 + L1_Mur3 LINE L1 4286 4506 -1374 5 1893 399 259 152 22 chr1 171537577 171537755 -25657677 + L1M5 LINE L1 3994 4194 -1952 5 1893 26 74 0 0 chr1 171537949 171538003 -25657429 + AT_rich Low_complexity Low_complexity 1 54 0 5 1893 755 267 144 33 chr1 171538268 171538601 -25656831 - Lx8 LINE L1 -287 7186 6817 6 1893 1646 216 55 8 chr1 171538708 171539073 -25656359 + Lx6 LINE L1 6816 7197 -263 6 1893 24484 123 18 15 chr1 171539071 171542040 -25653392 + L1_Mus3 LINE L1 1702 4627 -1256 6 1893 180 0 0 0 chr1 171542040 171542060 -25653372 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1893 24484 104 23 8 chr1 171542060 171543988 -25651444 + L1_Mus3 LINE L1 4628 6638 0 6 1893 664 306 77 55 chr1 171544460 171545539 -25649893 + L1MA4 LINE L1 2128 3233 -2910 6 1893 1390 222 26 171 chr1 171545539 171546029 -25649403 - MTD LTR MaLR 0 419 1 6 1893 664 300 27 49 chr1 171546029 171546250 -25649182 + L1MA4 LINE L1 3200 3418 -2462 6 1893 3665 95 13 16 chr1 171546297 171546843 -25648589 + L1Md_F2 LINE L1 6036 6579 -3 6 1893 627 299 44 68 chr1 171546901 171547466 -25647966 + L1MA4 LINE L1 5257 5803 -497 6 1893 608 221 71 29 chr1 171547466 171547606 -25647826 - B1_Mur1 SINE Alu 0 149 4 6 1893 581 310 64 53 chr1 171547606 171547689 -25647743 + L1MA4 LINE L1 5804 5904 -396 6 1893 317 180 0 16 chr1 171547954 171548016 -25647416 + 4.5SRNA scRNA scRNA 26 86 -8 6 1893 868 28 0 0 chr1 171547968 171548074 -25647358 + B1_Mm SINE Alu 42 147 0 6 1893 807 316 96 38 chr1 171548175 171548540 -25646892 + MTE-int LTR MaLR 1147 1532 -48 7 1893 2487 11 0 0 chr1 171548654 171548932 -25646500 + L1Md_A LINE L1 6304 6581 -1 7 1893 21 36 0 0 chr1 171548932 171548960 -25646472 + AT_rich Low_complexity Low_complexity 1 28 0 7 1893 614 265 103 158 chr1 171549363 171549762 -25645670 - MTEa LTR MaLR 0 379 3 7 1893 660 327 77 23 chr1 171550441 171550751 -25644681 + ORR1E LTR MaLR 28 354 -5 7 1893 729 132 0 9 chr1 171551935 171552050 -25643382 - URR1B DNA MER1_type -1 224 111 7 1893 612 221 168 6 chr1 171552306 171552479 -25642953 - MTD LTR MaLR -23 396 196 7 1893 767 278 9 28 chr1 171552473 171552688 -25642744 - B3 SINE B2 0 216 6 7 1893 5352 60 3 7 chr1 171552702 171553439 -25641993 - L1_Mus1 LINE L1 0 6567 5885 7 1893 534 314 90 21 chr1 171553439 171553628 -25641804 - MTD LTR MaLR -217 202 1 7 1893 231 245 116 54 chr1 171554252 171554364 -25641068 + RMER15 LTR ERVL 417 535 -40 7 1893 1307 249 53 67 chr1 171554530 171554651 -25640781 - ORR1D2 LTR MaLR 0 370 254 8 1893 210 0 120 0 chr1 171554651 171554701 -25640731 + (CAGG)n Simple_repeat Simple_repeat 2 57 0 8 1893 1307 249 53 67 chr1 171554701 171554954 -25640478 - ORR1D2 LTR MaLR -117 253 1 8 1893 456 348 93 19 chr1 171555401 171555862 -25639570 - L2a LINE L2 -250 3176 2680 8 1893 229 330 57 0 chr1 171556007 171556095 -25639337 - B1_Mur3 SINE Alu -55 94 2 8 1893 1765 164 35 141 chr1 171556148 171556575 -25638857 + ORR1C2 LTR MaLR 1 382 -2 8 1893 298 350 87 11 chr1 171557688 171557945 -25637487 + ERVL-B4-int LTR ERVL 1037 1309 -4358 8 1893 453 272 153 40 chr1 171559255 171559504 -25635928 - MLT1D LTR MaLR -192 313 37 8 1893 1119 278 56 59 chr1 171559781 171560224 -25635208 - Tigger1 DNA MER2_type -1 2417 1976 8 1893 659 157 0 6 chr1 171560272 171560452 -25634980 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1893 250 214 0 0 chr1 171560452 171560494 -25634938 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1893 689 269 144 7 chr1 171560568 171560853 -25634579 + L1M5 LINE L1 3411 3734 -2412 9 1893 207 88 0 0 chr1 171560987 171561021 -25634411 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 9 1893 263 243 14 0 chr1 171561028 171561102 -25634330 + GA-rich Low_complexity Low_complexity 2 76 0 9 1893 367 271 146 29 chr1 171561150 171561321 -25634111 - ID_B1 SINE B4 -33 191 1 9 1893 1380 92 5 0 chr1 171561479 171561664 -25633768 + B2_Mm1a SINE B2 3 188 -5 9 1893 2440 144 13 10 chr1 171561777 171562169 -25633263 + ORR1B1 LTR MaLR 1 393 -1 9 1893 380 165 11 0 chr1 171562703 171562794 -25632638 + (TG)n Simple_repeat Simple_repeat 2 93 0 9 1893 21 0 0 0 chr1 171563031 171563052 -25632380 + AT_rich Low_complexity Low_complexity 1 21 0 9 1893 1195 55 0 7 chr1 171563448 171563594 -25631838 + B1_Mus1 SINE Alu 2 146 -2 9 1893 973 175 10 36 chr1 171563613 171563809 -25631623 + ORR1C1 LTR MaLR 13 203 -175 9 1893 248 200 0 35 chr1 171563804 171563861 -25631571 + ORR1C1 LTR MaLR 330 384 0 9 1893 218 32 0 31 chr1 171564309 171564341 -25631091 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 1 1893 3082 89 2 2 chr1 171564450 171564857 -25630575 - MTB_Mm LTR MaLR 0 407 1 1 1893 301 316 73 29 chr1 171565419 171565556 -25629876 - MLT1A1 LTR MaLR -2 406 264 1 1893 609 52 0 0 chr1 171566212 171566289 -25629143 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 1893 247 216 261 0 chr1 171568048 171568159 -25627273 - B1F1 SINE Alu -9 140 1 1 1893 1648 175 155 9 chr1 171568868 171569203 -25626229 - ORR1C2 LTR MaLR 0 384 1 1 1893 27 62 0 0 chr1 171569473 171569521 -25625911 + AT_rich Low_complexity Low_complexity 1 48 0 1 1893 216 184 0 0 chr1 171569580 171569629 -25625803 + T-rich Low_complexity Low_complexity 1 49 0 1 1893 1580 11 0 0 chr1 171569652 171569828 -25625604 - L1Md_F2 LINE L1 -513 6069 5894 1 1893 4207 31 0 2 chr1 171569828 171570317 -25625115 + L1Md_F2 LINE L1 6092 6579 -3 1 1893 315 273 27 9 chr1 171570474 171570585 -25624847 + Lx8 LINE L1 7353 7465 -8 1 1893 339 365 58 64 chr1 171570984 171571327 -25624105 - MLT1A0 LTR MaLR 0 365 25 1 1893 1055 87 0 0 chr1 171571378 171571516 -25623916 + B1_Mus2 SINE Alu 1 138 -9 1 1893 279 0 0 0 chr1 171571516 171571547 -25623885 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1893 336 277 0 0 chr1 171571555 171571638 -25623794 + ID4 SINE ID 1 83 0 1 1893 681 180 21 28 chr1 171571759 171571902 -25623530 - B1_Mus1 SINE Alu -1 147 6 1 1893 769 231 0 0 chr1 171572317 171572464 -25622968 + B3A SINE B2 8 154 -44 1 1893 597 61 0 0 chr1 171572473 171572555 -25622877 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1893 592 281 10 75 chr1 171572846 171573046 -25622386 - B3A SINE B2 -6 192 6 1 236 388 307 88 16 chr1 171573180 171573372 -25622060 - L1MB1 LINE L1 0 6168 5963 1 1894 337 39 39 0 chr1 171573931 171573982 -25621450 + (TTAG)n Simple_repeat Simple_repeat 3 55 0 1 1894 1428 250 37 86 chr1 171574044 171574605 -25620827 + RMER5 LTR ERV1 1 534 0 1 1894 313 204 111 22 chr1 171575244 171575334 -25620098 + RMER10A LTR ERVL 318 415 -27 1 1894 180 125 0 0 chr1 171575675 171575707 -25619725 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1894 693 0 0 0 chr1 171577921 171577998 -25617434 + (TTCTC)n Simple_repeat Simple_repeat 1 77 0 1 1894 1620 31 8 4 chr1 171577998 171578262 -25617170 + (TTCCC)n Simple_repeat Simple_repeat 1 265 0 1 1894 2193 200 6 67 chr1 171578358 171578884 -25616548 - RLTR28 LTR ERVL 0 524 31 1 1894 2101 235 113 19 chr1 171578971 171579598 -25615834 + RMER1A Other Other 313 1066 0 1 1894 921 251 81 60 chr1 171579645 171580078 -25615354 + RMER10A LTR ERVL 1 442 0 1 1894 604 307 215 65 chr1 171581089 171581475 -25613957 + RMER15-int LTR ERVL 1944 2387 -2612 1 1894 2151 166 21 3 chr1 171582770 171583157 -25612275 - ORR1B1 LTR MaLR 0 394 1 1 1894 223 228 0 21 chr1 171583638 171583732 -25611700 + CT-rich Low_complexity Low_complexity 1 92 0 1 1894 218 247 83 36 chr1 171584021 171584105 -25611327 + PB1D10 SINE Alu 10 97 -20 1 1894 795 116 0 0 chr1 171584107 171584228 -25611204 + (TC)n Simple_repeat Simple_repeat 1 121 0 1 1894 802 113 89 0 chr1 171584239 171584363 -25611069 - B1_Mus1 SINE Alu -13 135 1 1 1894 315 0 0 0 chr1 171586002 171586037 -25609395 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1894 523 303 52 31 chr1 171586075 171586269 -25609163 + MIR SINE MIR 41 238 -24 1 1894 187 31 62 0 chr1 171590004 171590036 -25605396 + MIRc SINE MIR 113 146 -122 1 1894 258 143 0 0 chr1 171591130 171591179 -25604253 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1894 435 19 0 0 chr1 171591179 171591231 -25604201 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1894 441 0 0 0 chr1 171591232 171591281 -25604151 + (GGATG)n Simple_repeat Simple_repeat 4 52 0 1 1894 195 42 0 0 chr1 171591799 171591823 -25603609 + (GGA)n Simple_repeat Simple_repeat 3 26 0 1 1894 238 182 30 0 chr1 171592325 171592391 -25603041 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1894 447 259 69 0 chr1 171592392 171592523 -25602909 - RSINE1 SINE B4 -1 164 25 1 1894 489 104 0 0 chr1 171592962 171593039 -25602393 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1894 611 318 135 10 chr1 171593183 171593494 -25601938 - MLT1D LTR MaLR -8 497 148 1 1894 263 139 62 12 chr1 171594844 171594924 -25600508 - RMER17C LTR ERVK -133 277 194 1 1894 219 36 0 0 chr1 171594982 171595010 -25600422 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1894 227 321 0 23 chr1 171597202 171597288 -25598144 - MIR SINE MIR -31 231 148 1 1894 522 0 0 0 chr1 171598199 171598257 -25597175 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1894 216 0 0 0 chr1 171598257 171598280 -25597152 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1894 266 338 68 15 chr1 171598944 171599076 -25596356 - LTR82A LTR ERVL -272 600 462 1 1894 401 283 173 55 chr1 171599634 171599651 -25595781 - B4 SINE B4 0 292 279 1 1894 495 0 0 0 chr1 171599651 171599706 -25595726 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1894 401 283 173 55 chr1 171599706 171599744 -25595688 - B4 SINE B4 -14 278 219 1 1894 806 98 0 8 chr1 171599744 171599867 -25595565 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 1894 401 283 173 55 chr1 171599867 171600064 -25595368 - B4 SINE B4 -74 218 10 1 1894 351 183 0 0 chr1 171600736 171600818 -25594614 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1894 228 217 72 0 chr1 171601360 171601429 -25594003 - ID4_ SINE ID -9 74 1 1 1894 492 18 0 0 chr1 171601614 171601671 -25593761 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1894 198 0 0 0 chr1 171602636 171602658 -25592774 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 1 1894 552 325 31 0 chr1 171603064 171603227 -25592205 - ID_B1 SINE B4 -52 172 5 1 1894 396 0 0 0 chr1 171603351 171603395 -25592037 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1894 459 270 52 69 chr1 171605606 171605913 -25589519 + B4 SINE B4 2 274 -18 1 1894 310 250 8 16 chr1 171605916 171606042 -25589390 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 1 1894 187 352 15 66 chr1 171606345 171606482 -25588950 - MIR3 SINE MIR -17 191 62 1 1894 278 311 117 19 chr1 171606502 171606656 -25588776 + MIR SINE MIR 1 169 -93 1 1894 282 123 0 0 chr1 171606772 171606829 -25588603 + (T)n Simple_repeat Simple_repeat 1 57 0 1 1894 200 167 0 0 chr1 171612157 171612187 -25583245 + (CAT)n Simple_repeat Simple_repeat 1 30 0 1 1894 392 19 39 0 chr1 171612311 171612363 -25583069 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 1 1894 585 257 11 7 chr1 171613167 171613306 -25582126 - ID_B1 SINE B4 -11 213 77 1 1894 1001 244 24 10 chr1 171614263 171614470 -25580962 - B3 SINE B2 -5 211 2 1 1894 479 333 35 0 chr1 171614717 171614861 -25580571 + B1F SINE Alu 1 149 0 1 1894 23 33 0 0 chr1 171615103 171615133 -25580299 + AT_rich Low_complexity Low_complexity 1 30 0 1 1894 198 0 0 0 chr1 171615145 171615167 -25580265 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1894 577 277 20 34 chr1 171615167 171615305 -25580127 - RSINE1 SINE B4 -25 140 3 1 1894 802 159 8 15 chr1 171616027 171616161 -25579271 + B1_Mus2 SINE Alu 15 147 0 1 1894 22 35 0 0 chr1 171616454 171616483 -25578949 + AT_rich Low_complexity Low_complexity 1 29 0 1 1894 186 326 54 33 chr1 171616544 171616636 -25578796 - MIRb SINE MIR -74 194 101 1 1894 182 321 52 60 chr1 171616647 171616763 -25578669 - MIR SINE MIR -138 124 10 1 1894 512 339 102 42 chr1 171618322 171618587 -25576845 + B4A SINE B4 8 288 -4 1 1894 254 274 0 14 chr1 171618609 171618683 -25576749 + (CATA)n Simple_repeat Simple_repeat 4 76 0 1 1894 198 71 0 0 chr1 171619122 171619150 -25576282 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1894 400 265 0 24 chr1 171619773 171619858 -25575574 + ID4_ SINE ID 1 83 0 1 1894 323 335 65 22 chr1 171620236 171620459 -25574973 + MIR SINE MIR 3 232 -30 1 1894 240 238 15 31 chr1 171621620 171621685 -25573747 + ID4 SINE ID 8 71 -12 1 1894 503 101 0 12 chr1 171621970 171622050 -25573382 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1894 225 94 0 0 chr1 171622674 171622706 -25572726 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1894 22 0 0 0 chr1 171623216 171623238 -25572194 + AT_rich Low_complexity Low_complexity 1 22 0 1 1894 213 175 0 0 chr1 171623525 171623565 -25571867 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1894 336 138 0 0 chr1 171624180 171624245 -25571187 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1894 1416 242 77 26 chr1 171626910 171627262 -25568170 - ORR1D2 LTR MaLR 0 370 1 1 1894 1171 270 63 41 chr1 171629707 171630101 -25565331 - MTD LTR MaLR -12 407 5 1 1894 279 0 0 0 chr1 171630200 171630231 -25565201 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 1894 897 125 0 0 chr1 171630634 171630786 -25564646 + (TC)n Simple_repeat Simple_repeat 2 153 0 1 1894 207 0 0 0 chr1 171630805 171630828 -25564604 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 1894 376 245 50 0 chr1 171630834 171630930 -25564502 - PB1D7 SINE Alu -21 126 25 1 1894 666 284 7 0 chr1 171631153 171631294 -25564138 + RSINE1 SINE B4 11 152 -13 1 1894 24 0 0 0 chr1 171631311 171631335 -25564097 + AT_rich Low_complexity Low_complexity 1 24 0 1 1894 6650 48 1 0 chr1 171631584 171632351 -25563081 + L1Md_F2 LINE L1 5815 6582 0 1 1894 402 237 312 14 chr1 171632763 171632904 -25562528 - B3A SINE B2 -15 183 1 1 1894 268 111 37 0 chr1 171633580 171633634 -25561798 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 1 1894 1301 34 0 0 chr1 171634311 171634457 -25560975 + B1_Mus2 SINE Alu 1 146 -1 1 1894 181 344 136 8 chr1 171634464 171634596 -25560836 - MIRb SINE MIR -29 239 91 1 1894 304 312 179 13 chr1 171635723 171635947 -25559485 - MER21B LTR ERV1 -195 668 408 2 1894 22 0 0 0 chr1 171635980 171636002 -25559430 + AT_rich Low_complexity Low_complexity 1 22 0 2 1894 479 332 147 19 chr1 171636035 171636472 -25558960 - MLT2F LTR ERVL -85 578 5 2 1894 341 283 113 39 chr1 171636484 171636686 -25558746 - L1M5 LINE L1 -561 5601 5380 2 1894 440 336 7 36 chr1 171636733 171636872 -25558560 - RSINE1 SINE B4 0 165 31 2 1894 2350 186 55 22 chr1 171636872 171637382 -25558050 - RLTR11A2 LTR ERVK 0 527 1 2 1894 396 130 12 49 chr1 171637384 171637465 -25557967 - MYSERV-int LTR ERVK -2 6548 6471 2 1894 278 302 119 28 chr1 171637535 171637855 -25557577 - L1M5 LINE L1 -762 5384 5036 2 1894 1749 132 70 30 chr1 171637894 171638223 -25557209 + RMER4A LTR ERVK 6 347 -119 2 1894 725 0 0 12 chr1 171638223 171638309 -25557123 + (TTCTC)n Simple_repeat Simple_repeat 5 89 0 2 1894 285 29 0 0 chr1 171638309 171638342 -25557090 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 2 1894 2433 93 12 30 chr1 171638539 171638872 -25556560 + ORR1A2 LTR MaLR 1 327 0 2 1894 485 312 14 0 chr1 171639170 171639308 -25556124 - Tigger5 DNA MER2_type 0 2406 2267 2 1894 1473 39 0 0 chr1 171639391 171639571 -25555861 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1894 542 54 0 13 chr1 171639571 171639646 -25555786 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 2 1894 319 232 61 0 chr1 171639983 171640082 -25555350 - Tigger5 DNA MER2_type -140 2266 2162 2 1894 6767 109 11 13 chr1 171640665 171641678 -25553754 - Lx LINE L1 0 6654 5681 2 1894 859 281 123 40 chr1 171641715 171642041 -25553391 + ORR1E LTR MaLR 1 353 -6 2 1894 441 81 0 0 chr1 171642106 171642168 -25553264 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1894 195 42 0 0 chr1 171642582 171642606 -25552826 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1894 312 242 202 0 chr1 171642606 171642730 -25552702 + L1MC LINE L1 5176 5324 -822 2 1894 32 43 0 0 chr1 171642760 171642806 -25552626 + AT_rich Low_complexity Low_complexity 1 46 0 2 1894 633 80 0 0 chr1 171642876 171642964 -25552468 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1894 552 239 64 43 chr1 171642966 171643106 -25552326 - RSINE1 SINE B4 -20 145 3 2 1894 468 0 0 0 chr1 171643123 171643175 -25552257 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1894 310 262 259 14 chr1 171643176 171643323 -25552109 - B3 SINE B2 -32 184 2 2 1894 674 227 21 21 chr1 171644281 171644425 -25551007 - B1F1 SINE Alu -1 148 5 2 1894 376 318 40 22 chr1 171644640 171644868 -25550564 - L1M5 LINE L1 -2386 3760 3529 2 1894 237 249 97 51 chr1 171645108 171645303 -25550129 - L1M5 LINE L1 -2930 3216 3013 2 1894 1203 149 124 0 chr1 171645556 171645757 -25549675 - URR1A DNA MER1_type 0 226 1 2 1894 3578 173 40 25 chr1 171646163 171646793 -25548639 + Lx2B LINE L1 6349 6987 -13 2 1894 213 39 0 0 chr1 171646795 171646821 -25548611 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2 1894 371 250 10 0 chr1 171647531 171647635 -25547797 + Lx7 LINE L1 7577 7681 -15 2 1894 1323 108 31 26 chr1 171647683 171647874 -25547558 + B2_Mm2 SINE B2 2 193 -2 2 1894 367 194 23 23 chr1 171648047 171648271 -25547161 + (CATA)n Simple_repeat Simple_repeat 1 224 0 2 1894 288 156 0 0 chr1 171648273 171648318 -25547114 - Lx3C LINE L1 -363 6613 6569 2 1894 401 105 47 0 chr1 171648336 171648422 -25547010 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1894 292 56 0 0 chr1 171648535 171648571 -25546861 - U2 snRNA snRNA -152 36 1 2 1894 210 300 75 75 chr1 171648592 171648765 -25546667 + L2a LINE L2 2973 3145 -281 2 1894 240 325 89 0 chr1 171648863 171648986 -25546446 - L3 LINE CR1 -1133 3356 3223 2 1894 388 353 91 38 chr1 171649443 171649785 -25545647 + LTR85a LTR Gypsy? 34 393 -309 2 1894 202 213 21 21 chr1 171649796 171649844 -25545588 + CT-rich Low_complexity Low_complexity 1 48 0 2 1894 325 277 0 0 chr1 171649872 171649955 -25545477 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1894 2856 180 22 93 chr1 171651699 171651829 -25543603 - RMER1B Other Other -9 1057 934 2 1894 1278 28 0 27 chr1 171651829 171651976 -25543456 + B1_Mus1 SINE Alu 1 143 -5 2 1894 2856 180 22 93 chr1 171651976 171651989 -25543443 - RMER1B Other Other -133 933 926 2 1894 369 0 0 0 chr1 171651989 171652030 -25543402 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1894 2856 180 22 93 chr1 171652030 171652570 -25542862 - RMER1B Other Other -141 925 422 2 1894 1129 182 1 6 chr1 171652562 171652772 -25542660 - RMER1B Other Other -831 235 46 2 1894 11927 122 15 10 chr1 171653565 171656224 -25539208 + Lx LINE L1 3981 6653 -1 2 1894 25 0 0 0 chr1 171656229 171656254 -25539178 + AT_rich Low_complexity Low_complexity 1 25 0 2 1894 312 280 49 24 chr1 171656696 171656837 -25538595 + MTEb LTR MaLR 239 376 -3 2 1894 190 380 34 27 chr1 171657623 171657769 -25537663 - MIRb SINE MIR -28 240 94 2 1894 666 58 0 0 chr1 171657831 171657918 -25537514 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1894 226 355 0 11 chr1 171658014 171658108 -25537324 + GA-rich Low_complexity Low_complexity 2 94 0 2 1894 367 312 18 9 chr1 171658232 171658345 -25537087 - MLT1A1 LTR MaLR -294 114 1 2 1894 297 0 0 0 chr1 171658507 171658540 -25536892 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1894 387 0 0 0 chr1 171658540 171658582 -25536850 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1894 849 75 50 0 chr1 171658584 171658704 -25536728 - B1_Mus1 SINE Alu -22 126 1 2 1894 450 0 0 0 chr1 171659367 171659417 -25536015 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1894 225 284 0 39 chr1 171660034 171660111 -25535321 + CT-rich Low_complexity Low_complexity 1 74 0 2 1894 526 307 43 7 chr1 171662429 171662570 -25532862 + RSINE1 SINE B4 3 148 -17 2 1894 308 215 0 9 chr1 171662648 171662756 -25532676 + CT-rich Low_complexity Low_complexity 1 107 0 2 1894 221 307 0 0 chr1 171663413 171663480 -25531952 + MIRc SINE MIR 102 171 -105 2 1894 182 143 31 31 chr1 171663686 171663751 -25531681 + CT-rich Low_complexity Low_complexity 5 69 0 2 1894 1494 220 79 40 chr1 171663791 171663983 -25531449 + MTD LTR MaLR 4 211 -208 2 1894 2508 93 21 169 chr1 171663983 171664261 -25531171 - MTB_Mm LTR MaLR 0 407 196 2 1894 1233 68 0 0 chr1 171664261 171664407 -25531025 - B1_Mus1 SINE Alu 0 148 3 2 1894 2508 93 21 169 chr1 171664407 171664606 -25530826 - MTB_Mm LTR MaLR -212 195 1 2 1894 1494 225 88 38 chr1 171664606 171664812 -25530620 + MTD LTR MaLR 212 396 -23 2 1894 207 196 0 0 chr1 171665854 171665900 -25529532 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1894 265 333 67 36 chr1 171665936 171666101 -25529331 + MIR SINE MIR 80 249 -13 2 1894 214 320 8 39 chr1 171668185 171668315 -25527117 + CT-rich Low_complexity Low_complexity 4 129 0 2 1894 285 337 123 29 chr1 171668340 171668511 -25526921 + MIRb SINE MIR 34 220 -48 2 1894 189 0 0 0 chr1 171669767 171669788 -25525644 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1894 1049 44 0 0 chr1 171669853 171669988 -25525444 + B1_Mus1 SINE Alu 14 148 0 2 1894 1175 102 6 0 chr1 171670003 171670180 -25525252 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 1894 4763 93 30 37 chr1 171670235 171670991 -25524441 + RMER17A LTR ERVK 1 751 0 2 1894 422 269 17 42 chr1 171671123 171671243 -25524189 + B1F SINE Alu 20 136 -13 2 1894 274 221 53 0 chr1 171671244 171671339 -25524093 + T-rich Low_complexity Low_complexity 5 104 0 2 1894 225 300 0 0 chr1 171672405 171672455 -25522977 + polypyrimidine Low_complexity Low_complexity 3 52 0 2 1894 357 278 30 0 chr1 171673277 171673410 -25522022 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 1894 441 0 0 0 chr1 171674718 171674767 -25520665 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1894 549 0 0 0 chr1 171675054 171675115 -25520317 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1894 311 289 60 0 chr1 171675122 171675205 -25520227 - PB1D10 SINE Alu -21 96 9 2 1894 549 0 0 0 chr1 171675804 171675865 -25519567 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1894 198 258 48 0 chr1 171676753 171676815 -25518617 + MIRb SINE MIR 40 104 -164 2 1894 533 88 12 0 chr1 171678551 171678631 -25516801 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1894 299 65 22 0 chr1 171679260 171679306 -25516126 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1894 237 98 0 0 chr1 171680022 171680063 -25515369 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1894 184 333 0 0 chr1 171680825 171680885 -25514547 - L2c LINE L2 -40 3347 3288 2 1894 186 43 0 0 chr1 171682838 171682861 -25512571 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1894 374 138 417 35 chr1 171683361 171683476 -25511956 + ID_B1 SINE B4 1 159 -65 2 1894 494 208 62 52 chr1 171683475 171683668 -25511764 - RMER5 LTR ERV1 -8 526 332 2 1894 2947 148 48 6 chr1 171683897 171684400 -25511032 - RLTR28 LTR ERVL 0 524 1 2 1894 906 322 25 9 chr1 171685175 171685492 -25509940 + Tigger7 DNA MER2_type 26 347 -2144 2 1894 376 171 26 0 chr1 171685490 171685566 -25509866 + Tigger7 DNA MER2_type 960 1037 -1454 2 1894 234 253 25 0 chr1 171687325 171687404 -25508028 - MIRc SINE MIR -6 262 182 2 1894 351 0 0 0 chr1 171687678 171687717 -25507715 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1894 389 304 80 0 chr1 171689257 171689369 -25506063 - MLT1I LTR MaLR -176 235 115 2 1894 1378 207 38 116 chr1 171690435 171690833 -25504599 + ORR1D2 LTR MaLR 4 370 0 2 1894 336 231 0 0 chr1 171691089 171691154 -25504278 + L1MA6 LINE L1 6207 6271 -29 2 1894 414 319 58 58 chr1 171691363 171691586 -25503846 - MTD LTR MaLR -148 271 49 2 1894 945 213 38 43 chr1 171691587 171691798 -25503634 + B3 SINE B2 2 211 -5 2 1894 341 302 17 0 chr1 171692167 171692283 -25503149 + MLT1A0 LTR MaLR 32 149 -216 2 1894 804 95 0 0 chr1 171692290 171692427 -25503005 + (GGA)n Simple_repeat Simple_repeat 2 138 0 2 1894 387 0 0 0 chr1 171694521 171694564 -25500868 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1894 24 0 0 0 chr1 171694772 171694796 -25500636 + AT_rich Low_complexity Low_complexity 1 24 0 2 1894 308 331 47 63 chr1 171695422 171695612 -25499820 + MER20 DNA MER1_type 24 210 -9 2 1894 991 243 195 3 chr1 171696258 171696592 -25498840 - MTD LTR MaLR 0 419 22 3 1894 549 0 0 0 chr1 171696835 171696896 -25498536 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1894 649 290 34 13 chr1 171697214 171697448 -25497984 - MLT1C LTR MaLR -190 277 39 3 1894 207 0 0 0 chr1 171697461 171697484 -25497948 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1894 368 254 156 0 chr1 171697493 171697615 -25497817 - B1F SINE Alu -8 141 1 3 1894 450 261 166 37 chr1 171697658 171697845 -25497587 - B3 SINE B2 -5 211 1 3 1894 22 56 0 0 chr1 171697890 171697926 -25497506 + AT_rich Low_complexity Low_complexity 1 36 0 3 1894 330 231 0 0 chr1 171698025 171698090 -25497342 - RMER15 LTR ERVL -108 467 403 3 1894 427 326 149 0 chr1 171698093 171698274 -25497158 - Lx8 LINE L1 -210 7263 7056 3 1894 212 0 36 0 chr1 171698695 171698723 -25496709 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 1894 860 294 92 26 chr1 171700268 171700683 -25494749 + L1MA10 LINE L1 4775 5216 -924 3 1894 1894 66 0 119 chr1 171700683 171701011 -25494421 - RLTR10B LTR ERVK 0 292 4 3 1894 238 32 0 0 chr1 171701011 171701042 -25494390 - RLTR10B LTR ERVK -261 31 1 3 1894 1151 314 95 35 chr1 171701080 171702073 -25493359 + L1MA10 LINE L1 5271 6322 -12 3 1894 747 296 80 45 chr1 171702178 171702602 -25492830 + Charlie1a DNA MER1_type 910 1348 -107 3 1894 194 0 39 0 chr1 171703057 171703083 -25492349 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1894 248 73 0 0 chr1 171703108 171703149 -25492283 - B1_Mur4 SINE Alu 0 150 110 3 1894 1068 74 22 0 chr1 171703149 171703284 -25492148 - B1_Mus1 SINE Alu -10 138 1 3 1894 203 278 0 18 chr1 171704066 171704121 -25491311 + L2b LINE L2 3073 3126 -249 3 1894 423 0 0 0 chr1 171704263 171704310 -25491122 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1895 360 265 20 0 chr1 171704404 171704506 -25490926 - B4 SINE B4 -173 119 16 3 1895 201 324 14 0 chr1 171704817 171704888 -25490544 - MIR SINE MIR -1 261 190 3 1895 2951 86 0 15 chr1 171705233 171705636 -25489796 + MTB LTR MaLR 1 397 -3 3 1895 2998 43 0 0 chr1 171705636 171705982 -25489450 + ORR1A1 LTR MaLR 1 346 0 3 1895 245 303 13 0 chr1 171706164 171706240 -25489192 + L1MC LINE L1 5728 5804 -2078 3 1895 585 0 0 0 chr1 171708353 171708418 -25487014 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 3 1895 366 335 65 71 chr1 171709214 171709539 -25485893 + MLT2B3 LTR ERVL 6 328 -226 3 1895 591 291 27 86 chr1 171710685 171710907 -25484525 - B4A SINE B4 0 292 84 3 1895 647 261 48 52 chr1 171711240 171711511 -25483921 - B4 SINE B4 -18 274 5 3 1895 385 221 39 0 chr1 171711547 171711624 -25483808 - PB1D10 SINE Alu -36 81 2 3 1895 226 0 0 56 chr1 171711636 171711672 -25483760 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1895 198 103 0 0 chr1 171711986 171712015 -25483417 + (TAA)n Simple_repeat Simple_repeat 3 31 0 3 1895 339 293 0 12 chr1 171713584 171713667 -25481765 - ID4_ SINE ID 0 83 2 3 1895 391 252 50 36 chr1 171713676 171713816 -25481616 - B1F SINE Alu -7 142 1 3 1895 551 210 158 21 chr1 171715948 171716138 -25479294 + MLT1F-int LTR MaLR 1269 1484 -5 3 1895 1110 294 0 7 chr1 171716821 171716965 -25478467 + Lx8 LINE L1 7007 7150 -323 3 1895 540 0 0 0 chr1 171716965 171717025 -25478407 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1895 1110 294 0 7 chr1 171717025 171717151 -25478281 + Lx8 LINE L1 7151 7275 -198 3 1895 959 114 291 0 chr1 171717152 171717327 -25478105 - URR1A DNA MER1_type 0 226 1 3 1895 285 319 24 32 chr1 171717432 171717555 -25477877 - RMER20B LTR ERVK -24 603 482 3 1895 277 294 91 59 chr1 171717744 171717980 -25477452 - RMER20B LTR ERVK -208 419 187 3 1895 229 122 0 0 chr1 171718408 171718449 -25476983 + Lx8 LINE L1 7431 7471 -2 3 1895 431 297 46 42 chr1 171718658 171718897 -25476535 - Lx9 LINE L1 -172 7472 7233 3 1895 1609 319 52 14 chr1 171718942 171719619 -25475813 - Lx9 LINE L1 -451 7022 6321 3 1895 1069 276 119 63 chr1 171719995 171720420 -25475012 + Lx8 LINE L1 6940 7372 -101 3 1895 1819 229 135 94 chr1 171720420 171721007 -25474425 + RMER19C LTR ERVK 1 611 0 3 1895 1069 276 119 63 chr1 171721007 171721087 -25474345 + Lx8 LINE L1 7373 7472 -1 3 1895 558 219 25 0 chr1 171721234 171721353 -25474079 + RSINE1 SINE B4 9 130 -35 3 1895 192 404 48 32 chr1 171721473 171721662 -25473770 + L2a LINE L2 2984 3175 -251 3 1895 222 326 76 0 chr1 171721927 171722019 -25473413 + L2a LINE L2 3327 3425 -1 3 1895 24 0 0 0 chr1 171722372 171722396 -25473036 + AT_rich Low_complexity Low_complexity 1 24 0 3 1895 1335 174 5 0 chr1 171723927 171724145 -25471287 + URR1B DNA MER1_type 7 225 0 3 1895 373 237 206 0 chr1 171724814 171724911 -25470521 + PB1D10 SINE Alu 1 117 0 3 1895 29209 66 5 9 chr1 171725086 171729580 -25465852 - L1Md_F2 LINE L1 0 6582 2111 3 1895 973 47 0 0 chr1 171729580 171729687 -25465745 - U6 snRNA snRNA 0 107 1 3 1895 1278 257 118 3 chr1 171729803 171730135 -25465297 - ORR1D2 LTR MaLR 0 370 1 3 1895 183 129 0 0 chr1 171730149 171730180 -25465252 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1895 463 243 83 37 chr1 171730662 171730880 -25464552 + L1M3 LINE L1 3749 3976 -2164 3 1895 252 323 0 0 chr1 171730981 171731046 -25464386 - B4 SINE B4 -5 287 223 3 1895 360 268 186 16 chr1 171731061 171731190 -25464242 - B4 SINE B4 -139 153 3 3 1895 1519 239 52 6 chr1 171731222 171731551 -25463881 + MTD LTR MaLR 2 345 -74 3 1895 691 210 104 68 chr1 171731600 171731820 -25463612 + MTC-int LTR MaLR 1 228 -1030 3 1895 1147 255 70 74 chr1 171731825 171732408 -25463024 - L1MC2 LINE L1 -39 6305 5724 3 1895 304 348 62 111 chr1 171732543 171732850 -25462582 + LTR85b LTR Gypsy? 438 729 -55 3 1895 185 321 115 35 chr1 171733523 171733636 -25461796 + L2c LINE L2 3023 3144 -243 3 1895 390 331 33 8 chr1 171733700 171733822 -25461610 - LTR16B1 LTR ERVL -355 125 1 3 1895 516 197 36 24 chr1 171735154 171735305 -25460127 - RMER15 LTR ERVL -491 84 1 3 1895 2942 141 24 10 chr1 171735506 171736007 -25459425 - L1_Mur2 LINE L1 -3221 2656 2149 3 1895 329 320 47 23 chr1 171736454 171736582 -25458850 + MIR SINE MIR 17 147 -115 3 1895 195 310 225 0 chr1 171736767 171736909 -25458523 + MIRb SINE MIR 83 256 -12 3 1895 261 0 0 0 chr1 171736958 171736987 -25458445 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1895 252 257 259 20 chr1 171737593 171737740 -25457692 - L1MC2 LINE L1 -954 6831 6650 3 1895 649 39 0 25 chr1 171737870 171737950 -25457482 + L1Md_F2 LINE L1 5509 5586 -297 3 1895 8509 49 6 5 chr1 171737950 171738945 -25456487 + L1Md_F2 LINE L1 5587 6582 0 3 1895 441 0 0 0 chr1 171739361 171739410 -25456022 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1895 254 246 103 17 chr1 171739496 171739554 -25455878 - B4 SINE B4 -11 281 219 3 1895 587 310 5 16 chr1 171739593 171739783 -25455649 - L1MC2 LINE L1 -267 6077 5890 3 1895 265 261 41 13 chr1 171739887 171739966 -25455466 - BC1_Mm scRNA scRNA -71 81 1 3 1895 236 191 21 0 chr1 171739999 171740046 -25455386 - PB1D10 SINE Alu -33 84 37 3 1895 1207 126 119 15 chr1 171740051 171740252 -25455180 + URR1A DNA MER1_type 5 226 0 3 1895 301 286 217 21 chr1 171740432 171740575 -25454857 - L1ME3 LINE L1 -123 6039 5869 3 1895 401 279 47 7 chr1 171740664 171740812 -25454620 - L1ME3 LINE L1 -444 5729 5576 3 1895 185 222 0 0 chr1 171742121 171742157 -25453275 + L2b LINE L2 3120 3155 -220 3 1895 205 259 19 0 chr1 171742425 171742479 -25452953 + GA-rich Low_complexity Low_complexity 4 58 0 3 1895 219 69 0 0 chr1 171742578 171742607 -25452825 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1895 467 78 13 0 chr1 171742607 171742684 -25452748 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1895 755 283 11 26 chr1 171743532 171743721 -25451711 - B3A SINE B2 -8 190 5 3 1895 519 17 0 0 chr1 171743741 171743801 -25451631 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1895 181 304 0 0 chr1 171743937 171743983 -25451449 - MER5A DNA MER1_type 0 189 144 3 1895 198 174 0 0 chr1 171745727 171745773 -25449659 + (ATG)n Simple_repeat Simple_repeat 2 47 0 3 1895 180 0 0 0 chr1 171747929 171747949 -25447483 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1895 216 0 0 0 chr1 171747950 171747974 -25447458 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 3 1895 401 239 130 0 chr1 171748344 171748436 -25446996 + PB1D10 SINE Alu 1 104 -13 3 1895 306 0 0 0 chr1 171748438 171748472 -25446960 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1895 200 29 118 0 chr1 171748658 171748692 -25446740 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3 1895 301 233 31 72 chr1 171748946 171749043 -25446389 - MLT1A1 LTR MaLR 0 408 316 3 1895 361 349 85 7 chr1 171750314 171750467 -25444965 + MER5A1 DNA MER1_type 1 165 -1 3 1895 244 275 41 52 chr1 171750515 171750602 -25444830 - MIR SINE MIR -137 131 45 3 1895 306 306 42 31 chr1 171751611 171751779 -25443653 - MLT1H2 LTR MaLR -22 557 361 3 1895 555 108 0 29 chr1 171751826 171751931 -25443501 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 3 1895 189 213 0 0 chr1 171754525 171754572 -25440860 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1895 235 0 57 0 chr1 171754784 171754819 -25440613 + (TATAA)n Simple_repeat Simple_repeat 3 39 0 3 1895 280 189 36 0 chr1 171754832 171754943 -25440489 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 3 1895 324 0 0 0 chr1 171754943 171754979 -25440453 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1895 691 308 53 60 chr1 171755013 171755296 -25440136 - B4A SINE B4 -4 288 8 3 1895 495 275 44 22 chr1 171756108 171756290 -25439142 + Lx8 LINE L1 7281 7466 -7 3 1895 452 320 90 60 chr1 171756308 171756574 -25438858 + B4 SINE B4 3 276 -16 3 1895 218 139 0 44 chr1 171756596 171756641 -25438791 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1895 2201 119 3 9 chr1 171756795 171757135 -25438297 - L1_Mm LINE L1 -511 5372 5035 3 1895 6401 64 118 1 chr1 171757124 171758002 -25437430 + L1_Mus3 LINE L1 5658 6638 0 3 1895 432 317 6 30 chr1 171758081 171758247 -25437185 + RSINE1 SINE B4 3 164 -1 3 1895 556 307 66 93 chr1 171758316 171758650 -25436782 + MLT1E1 LTR MaLR 314 638 -16 4 1895 1225 309 65 42 chr1 171758656 171759132 -25436300 + MLT2B3 LTR ERVL 19 505 -49 4 1895 226 156 20 82 chr1 171759182 171759231 -25436201 - MLT1E1A LTR MaLR -347 333 288 4 1895 245 178 44 0 chr1 171759294 171759339 -25436093 + MLT2B3 LTR ERVL 508 554 0 4 1895 332 293 91 39 chr1 171759340 171759571 -25435861 - L1MC5 LINE L1 -238 7723 7481 4 1895 2069 263 52 51 chr1 171759932 171760118 -25435314 - Lx8 LINE L1 -47 7426 7238 4 1895 227 79 0 26 chr1 171760118 171760157 -25435275 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1895 2069 263 52 51 chr1 171760157 171760660 -25434772 - Lx8 LINE L1 -236 7237 6736 4 1895 333 209 60 0 chr1 171761935 171762002 -25433430 + ID4 SINE ID 4 74 -9 4 1895 29 28 0 0 chr1 171763057 171763093 -25432339 + AT_rich Low_complexity Low_complexity 1 36 0 4 1895 359 264 54 9 chr1 171763105 171763216 -25432216 - MIRb SINE MIR -66 202 87 4 1895 734 255 6 90 chr1 171763954 171764091 -25431341 + RSINE1 SINE B4 4 137 -28 4 1895 180 125 0 0 chr1 171764091 171764123 -25431309 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1895 734 255 6 90 chr1 171764123 171764162 -25431270 + RSINE1 SINE B4 138 165 0 4 1895 341 169 12 0 chr1 171764194 171764277 -25431155 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1895 27 49 0 0 chr1 171764277 171764318 -25431114 + AT_rich Low_complexity Low_complexity 1 41 0 4 1895 3380 119 102 17 chr1 171765882 171766419 -25429013 + RMER4B LTR ERVK 3 585 0 4 1895 328 364 112 4 chr1 171766484 171766743 -25428689 + L2a LINE L2 2721 3007 -412 4 1895 198 358 27 75 chr1 171766846 171767033 -25428399 + L2a LINE L2 3183 3360 -66 4 1895 933 174 168 5 chr1 171767047 171767238 -25428194 - URR1A DNA MER1_type 0 226 5 4 1895 422 321 82 18 chr1 171768654 171768825 -25426607 + B3A SINE B2 1 182 -16 4 1895 697 273 89 30 chr1 171769053 171769389 -25426043 + MLT2C1 LTR ERVL 1 356 -41 4 1895 798 291 79 45 chr1 171769588 171769941 -25425491 - MLT1A0 LTR MaLR 0 365 1 4 1895 637 315 22 0 chr1 171770590 171770768 -25424664 + B3A SINE B2 1 182 -16 4 1895 261 0 0 0 chr1 171771005 171771034 -25424398 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1895 626 268 38 22 chr1 171771763 171771957 -25423475 - B3 SINE B2 0 216 8 4 1895 241 184 0 0 chr1 171773099 171773137 -25422295 + U2 snRNA snRNA 1 38 -150 4 1895 306 0 0 0 chr1 171773830 171773864 -25421568 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1895 489 278 124 29 chr1 171773865 171774002 -25421430 - B3A SINE B2 -48 150 1 4 1895 527 145 0 5 chr1 171774008 171774099 -25421333 + B1_Mur4 SINE Alu 59 149 -1 4 1895 914 281 69 53 chr1 171774421 171774797 -25420635 + L1MA6 LINE L1 5610 5991 -309 4 1895 855 284 46 90 chr1 171774845 171774895 -25420537 - ORR1E LTR MaLR -5 354 308 4 1895 1218 57 0 0 chr1 171774895 171775035 -25420397 + B1_Mm SINE Alu 2 141 -6 4 1895 1072 119 6 6 chr1 171775037 171775215 -25420217 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1895 855 284 46 90 chr1 171775215 171775528 -25419904 - ORR1E LTR MaLR -52 307 4 4 1895 4067 294 83 21 chr1 171775528 171776072 -25419360 - MTE-int LTR MaLR -50 1530 961 4 1895 5231 74 14 0 chr1 171776072 171776720 -25418712 - L1_Mus4 LINE L1 -1 6635 5979 4 1895 4067 294 83 21 chr1 171776720 171777513 -25417919 - MTE-int LTR MaLR -620 960 109 4 1895 788 282 61 30 chr1 171777507 171777775 -25417657 - ORR1E LTR MaLR -102 282 7 4 1895 378 324 50 19 chr1 171777781 171778042 -25417390 + L1MA6 LINE L1 6023 6291 0 4 1895 953 328 3 17 chr1 171779343 171779638 -25415794 + B4 SINE B4 1 291 -1 4 1895 227 258 86 43 chr1 171780291 171780384 -25415048 - MTE2b LTR MaLR -2 377 281 4 1895 2440 43 11 0 chr1 171780413 171780693 -25414739 - L1_Mus1 LINE L1 0 6567 6285 4 1895 5186 56 0 0 chr1 171780693 171781317 -25414115 + L1_Mus1 LINE L1 5660 6283 -284 4 1895 239 71 24 0 chr1 171782860 171782902 -25412530 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1895 468 319 94 42 chr1 171786738 171787003 -25408429 + MLT1J LTR MaLR 1 279 -233 4 1895 276 276 22 76 chr1 171787255 171787439 -25407993 + Lx9 LINE L1 6011 6184 -1460 4 1895 522 266 18 67 chr1 171788454 171788619 -25406813 - MER20 DNA MER1_type -61 158 2 4 1895 732 328 21 57 chr1 171788829 171789110 -25406322 + B4A SINE B4 16 286 -6 4 1895 228 200 20 0 chr1 171790492 171790542 -25404890 + (TTA)n Simple_repeat Simple_repeat 2 52 0 4 1895 502 291 31 16 chr1 171790766 171790895 -25404537 + ID_B1 SINE B4 5 135 -89 4 1895 232 336 72 40 chr1 171791614 171791766 -25403666 + LTR82A LTR ERVL 70 226 -646 4 1895 292 332 201 64 chr1 171791790 171792191 -25403241 + LTR82A LTR ERVL 293 748 -124 4 1895 410 0 20 0 chr1 171792693 171792743 -25402689 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1895 13220 138 56 4 chr1 171793739 171796607 -25398825 + Lx2B LINE L1 3515 6503 -497 4 1895 2720 132 10 12 chr1 171796607 171797013 -25398419 + Lx2B LINE L1 6595 6999 -1 4 1895 227 241 86 25 chr1 171797247 171797328 -25398104 - MIRc SINE MIR -88 180 95 4 1895 240 307 50 61 chr1 171797833 171798011 -25397421 + MLT1A1 LTR MaLR 202 408 0 4 1895 447 361 60 38 chr1 171798088 171798229 -25397203 + L2b LINE L2 3037 3186 -189 4 1895 753 12 0 0 chr1 171798229 171798315 -25397117 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 4 1895 447 361 60 38 chr1 171798315 171798487 -25396945 + L2b LINE L2 3187 3357 -18 4 1895 1360 67 50 6 chr1 171799861 171800041 -25395391 - B2_Mm2 SINE B2 -7 188 1 4 1895 441 76 0 0 chr1 171800046 171800112 -25395320 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1895 245 290 129 0 chr1 171800419 171800512 -25394920 - MER45A DNA Tip100 -29 149 45 4 1895 3608 215 73 15 chr1 171800838 171801651 -25393781 - RMER13A LTR ERVK 0 860 1 4 1895 237 200 82 16 chr1 171801675 171801736 -25393696 - MER112 DNA MER1_type -4 257 193 4 1895 201 250 0 18 chr1 171802474 171802531 -25392901 + CT-rich Low_complexity Low_complexity 3 58 0 4 1895 287 345 61 9 chr1 171804578 171804692 -25390740 - ORR1D1 LTR MaLR -225 149 30 4 1895 369 0 0 0 chr1 171804778 171804819 -25390613 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1895 216 97 0 0 chr1 171804819 171804850 -25390582 + (ATGGTG)n Simple_repeat Simple_repeat 5 35 0 4 1895 249 310 60 0 chr1 171804858 171804958 -25390474 - PB1D9 SINE Alu -12 108 3 4 1895 319 21 42 0 chr1 171806579 171806627 -25388805 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1895 1059 68 45 0 chr1 171806627 171806759 -25388673 - B1_Mus1 SINE Alu -10 138 1 4 1895 333 0 0 0 chr1 171808153 171808190 -25387242 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1895 531 0 0 0 chr1 171808669 171808728 -25386704 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1895 237 265 45 57 chr1 171809545 171809633 -25385799 + MIR SINE MIR 63 149 -59 4 1895 1177 78 0 0 chr1 171809636 171809777 -25385655 + B1_Mus2 SINE Alu 1 141 -6 4 1895 1066 122 0 11 chr1 171809779 171809961 -25385471 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1895 855 29 0 0 chr1 171809962 171810064 -25385368 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 4 1895 384 22 0 0 chr1 171810520 171810565 -25384867 + (T)n Simple_repeat Simple_repeat 1 45 0 4 1895 2913 134 76 92 chr1 171810567 171811143 -25384289 + RMER2 LTR ERV1 1 567 0 4 1895 857 87 16 0 chr1 171811883 171812010 -25383422 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 4 1895 258 159 0 0 chr1 171812013 171812082 -25383350 + T-rich Low_complexity Low_complexity 1 69 0 4 1895 976 63 0 0 chr1 171812083 171812209 -25383223 - B1_Mm SINE Alu 0 147 22 4 1895 2932 80 2 51 chr1 171812738 171813148 -25382284 + L1Md_F2 LINE L1 6181 6570 -12 4 1895 368 368 37 31 chr1 171813272 171813463 -25381969 + MIRb SINE MIR 1 192 -76 4 1895 8543 151 55 34 chr1 171813921 171815451 -25379981 - L1_Mur3 LINE L1 0 5880 4286 4 1895 180 0 0 0 chr1 171815451 171815471 -25379961 + (TGG)n Simple_repeat Simple_repeat 1 20 0 4 1895 8543 151 55 34 chr1 171815471 171815569 -25379863 - L1_Mur3 LINE L1 -1595 4285 4219 4 1895 1857 228 93 29 chr1 171815609 171816093 -25379339 + RMER19C LTR ERVK 97 611 0 4 1895 684 272 58 23 chr1 171816132 171816305 -25379127 - B3A SINE B2 -18 180 2 4 1895 1010 269 104 55 chr1 171816344 171816832 -25378600 - L1MA6 LINE L1 -114 6186 5675 4 1895 4037 261 97 65 chr1 171816838 171818737 -25376695 - L1MA6 LINE L1 -760 5383 3423 4 1895 1582 315 24 35 chr1 171819471 171820105 -25375327 + L1M4 LINE L1 9 635 -5907 4 1895 3031 323 50 30 chr1 171820160 171821291 -25374141 - Lx8 LINE L1 -129 7344 6192 4 1895 813 146 0 0 chr1 171821291 171821428 -25374004 + (TTCTCC)n Simple_repeat Simple_repeat 6 142 0 4 1895 1324 24 12 0 chr1 171821430 171821598 -25373834 + (TTC)n Simple_repeat Simple_repeat 3 172 0 4 1895 219 146 0 0 chr1 171821599 171821640 -25373792 + (CCA)n Simple_repeat Simple_repeat 1 41 0 4 1895 1691 287 35 28 chr1 171821660 171822466 -25372966 - Lx8 LINE L1 -1314 6159 5314 4 1895 368 294 101 68 chr1 171822585 171822804 -25372628 - MER21B LTR ERV1 -125 738 513 4 1895 543 270 115 16 chr1 171822916 171823107 -25372325 - MER21B LTR ERV1 -548 315 106 4 1895 3732 109 49 5 chr1 171823107 171823659 -25371773 + MT2B2 LTR ERVL 1 576 -8 4 1895 406 307 141 45 chr1 171823814 171824169 -25371263 + L1M4 LINE L1 2970 3379 -3265 4 1895 1668 145 8 163 chr1 171824184 171824564 -25370868 + ORR1B2 LTR MaLR 1 321 -46 4 1895 812 213 83 4 chr1 171824567 171824781 -25370651 + Lx4B LINE L1 6756 7058 0 4 1895 358 83 0 0 chr1 171824782 171824830 -25370602 + ORR1B2 LTR MaLR 312 359 -8 4 1895 1073 121 6 0 chr1 171825190 171825364 -25370068 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 4 1895 507 189 100 0 chr1 171825676 171825766 -25369666 + PB1D10 SINE Alu 8 106 -11 4 1895 241 291 38 0 chr1 171826144 171826223 -25369209 + C-rich Low_complexity Low_complexity 1 82 0 4 1895 861 254 119 46 chr1 171826237 171826497 -25368935 - B4A SINE B4 -12 280 2 4 1895 229 341 0 22 chr1 171826774 171826864 -25368568 + L2a LINE L2 3337 3424 -2 4 1895 264 250 97 0 chr1 171827034 171827106 -25368326 + MTE2a LTR MaLR 216 294 -85 4 1895 288 0 0 0 chr1 171827222 171827254 -25368178 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1895 216 0 0 0 chr1 171827254 171827277 -25368155 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1895 468 0 0 0 chr1 171827277 171827328 -25368104 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1895 342 267 33 41 chr1 171827641 171827762 -25367670 + MER33 DNA MER1_type 76 195 -129 4 1895 1099 258 161 9 chr1 171828034 171828363 -25367069 - MTEa LTR MaLR 0 379 1 4 1895 431 271 90 0 chr1 171829044 171829166 -25366266 + MLT1C LTR MaLR 2 134 -333 5 1895 270 0 0 0 chr1 171829195 171829225 -25366207 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1895 705 275 49 22 chr1 171829225 171829448 -25365984 + MLT1C LTR MaLR 217 445 -22 5 1895 484 316 46 54 chr1 171830044 171830305 -25365127 + MLT1D LTR MaLR 247 505 0 5 1895 328 264 114 68 chr1 171830712 171830932 -25364500 - MLT1C LTR MaLR -137 330 101 5 1895 810 370 41 27 chr1 171830993 171831549 -25363883 - ERVL-E-int LTR ERVL -2172 3495 2932 5 1895 2172 182 15 8 chr1 171831644 171832038 -25363394 + RLTR16 LTR ERVK 1 397 -108 5 1895 284 277 74 19 chr1 171832521 171832661 -25362771 - ERVL-E-int LTR ERVL -3276 2481 2297 5 1895 1055 218 10 0 chr1 171833130 171833332 -25362100 - B3 SINE B2 -5 211 8 5 1895 1482 235 23 36 chr1 171834694 171835110 -25360322 + MTD LTR MaLR 1 405 -14 5 1896 294 29 0 0 chr1 171836026 171836061 -25359371 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 1896 364 74 0 18 chr1 171836071 171836126 -25359306 - HAL1-3A_ME LINE L1 -829 2029 1976 5 1896 392 160 10 0 chr1 171836126 171836226 -25359206 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 1896 317 151 0 0 chr1 171836232 171836285 -25359147 - HAL1-3A_ME LINE L1 -831 2027 1975 5 1896 991 224 82 43 chr1 171836305 171836585 -25358847 - B4A SINE B4 0 292 2 5 1896 1368 72 0 0 chr1 171836913 171837148 -25358284 + (CA)n Simple_repeat Simple_repeat 1 235 0 5 1896 511 178 367 6 chr1 171837309 171837467 -25357965 - B3 SINE B2 0 216 2 5 1896 1776 164 10 139 chr1 171838225 171838643 -25356789 + ORR1B2 LTR MaLR 3 366 -1 5 1896 974 103 64 0 chr1 171838696 171838852 -25356580 - B2_Mm1a SINE B2 -26 167 2 5 1896 486 0 0 0 chr1 171839747 171839801 -25355631 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 5 1896 1028 135 6 0 chr1 171839802 171839965 -25355467 - B2_Mm2 SINE B2 -31 164 1 5 1896 342 0 0 0 chr1 171840151 171840189 -25355243 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1896 275 350 142 28 chr1 171840449 171840661 -25354771 + MIR SINE MIR 8 243 -19 5 1896 1122 68 16 38 chr1 171841582 171841766 -25353666 - Lx LINE L1 -1 6653 6474 5 1896 423 0 0 0 chr1 171843046 171843093 -25352339 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1896 24 0 0 0 chr1 171844026 171844050 -25351382 + AT_rich Low_complexity Low_complexity 1 24 0 5 1896 501 262 67 7 chr1 171844196 171844346 -25351086 - ID_B1 SINE B4 0 224 66 5 1896 963 73 80 7 chr1 171844703 171844841 -25350591 + B1_Mus1 SINE Alu 1 148 0 5 1896 184 30 61 0 chr1 171844841 171844874 -25350558 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1896 744 219 25 15 chr1 171844895 171845093 -25350339 + B3A SINE B2 8 213 -3 5 1896 1309 84 22 0 chr1 171845604 171845782 -25349650 + B2_Mm2 SINE B2 2 183 -12 5 1896 292 179 13 13 chr1 171846296 171846375 -25349057 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1896 257 218 0 0 chr1 171846375 171846430 -25349002 + GA-rich Low_complexity Low_complexity 2 56 0 5 1896 1026 186 118 28 chr1 171848386 171848640 -25346792 + Lx5 LINE L1 6773 7049 -1 5 1896 741 79 0 0 chr1 171848714 171848815 -25346617 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 5 1896 293 293 91 0 chr1 171849115 171849214 -25346218 + PB1D10 SINE Alu 2 109 -8 5 1896 703 138 63 12 chr1 171850404 171850553 -25344879 - B1_Mur3 SINE Alu 0 150 5 5 1896 626 200 48 82 chr1 171850755 171850962 -25344470 + B3A SINE B2 15 214 -2 5 1896 367 274 234 11 chr1 171851108 171851296 -25344136 - MLT1A0 LTR MaLR -35 330 101 5 1896 495 259 68 34 chr1 171851303 171851479 -25343953 + MTE2a LTR MaLR 185 366 -13 5 1896 390 260 96 45 chr1 171851490 171851667 -25343765 + MLT1C LTR MaLR 75 260 -207 5 1896 598 104 17 42 chr1 171851677 171851797 -25343635 - URR1B DNA MER1_type 0 225 109 5 1896 261 0 0 0 chr1 171852628 171852657 -25342775 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1896 230 289 10 5 chr1 171852737 171852828 -25342604 - L2b LINE L2 -5 3382 3291 5 1896 1017 117 14 0 chr1 171853328 171853473 -25341959 + B1_Mus1 SINE Alu 2 148 0 5 1896 375 23 0 0 chr1 171853582 171853626 -25341806 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1896 232 214 0 18 chr1 171853730 171853787 -25341645 + MLT1J LTR MaLR 95 150 -362 5 1896 476 16 16 0 chr1 171853840 171853901 -25341531 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1896 973 272 94 12 chr1 171854669 171855011 -25340421 - RMER19C LTR ERVK 0 611 242 5 1896 306 0 0 0 chr1 171855017 171855051 -25340381 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1896 644 189 0 16 chr1 171855051 171855175 -25340257 - RSINE1 SINE B4 -41 124 3 5 1896 640 305 98 16 chr1 171855193 171855560 -25339872 - L1ME1 LINE L1 -2 6177 5781 5 1896 252 86 0 0 chr1 171855568 171855603 -25339829 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 1896 336 215 0 0 chr1 171855699 171855806 -25339626 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 1896 657 88 0 0 chr1 171855852 171855954 -25339478 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 1896 309 113 19 0 chr1 171855986 171856039 -25339393 - HAL1-3A_ME LINE L1 -830 2028 1975 5 1896 684 172 0 0 chr1 171856045 171856214 -25339218 + (TG)n Simple_repeat Simple_repeat 2 170 0 5 1896 232 323 164 26 chr1 171856474 171856700 -25338732 - L1ME1 LINE L1 -1 6178 5922 5 1896 661 313 62 26 chr1 171856913 171857185 -25338247 - B4A SINE B4 -10 282 1 5 1896 2850 68 5 2 chr1 171857567 171857978 -25337454 + BGLII LTR ERVK 6 417 -4 5 1896 238 311 11 0 chr1 171858670 171858760 -25336672 + GA-rich Low_complexity Low_complexity 5 95 0 5 1896 2607 149 44 15 chr1 171859279 171859755 -25335677 - Lx4A LINE L1 0 7058 6569 5 1896 1227 103 3 3 chr1 171860866 171861193 -25334239 + (GAAA)n Simple_repeat Simple_repeat 1 327 0 5 1896 258 296 0 0 chr1 171861891 171861962 -25333470 - ID4 SINE ID -10 73 3 5 1896 428 323 101 44 chr1 171862479 171862845 -25332587 - MLT1B LTR MaLR 0 390 4 5 1896 556 263 52 17 chr1 171862924 171863098 -25332334 - B3A SINE B2 -16 182 3 5 1896 1087 88 0 20 chr1 171863474 171863617 -25331815 + B1_Mus1 SINE Alu 1 142 -6 5 1896 527 0 16 0 chr1 171863617 171863680 -25331752 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 1896 215 202 23 23 chr1 171864809 171864895 -25330537 + CT-rich Low_complexity Low_complexity 5 90 0 5 1896 235 278 102 82 chr1 171865121 171865219 -25330213 + PB1D10 SINE Alu 4 103 -14 5 1896 332 165 18 110 chr1 171865634 171865645 -25329787 - PB1D7 SINE Alu 0 120 111 5 1896 234 0 0 0 chr1 171865645 171865671 -25329761 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 5 1896 384 183 51 51 chr1 171865671 171865769 -25329663 - PB1 SINE Alu -9 118 21 5 1896 409 300 47 64 chr1 171866636 171866807 -25328625 + B4A SINE B4 12 179 -113 5 1896 297 372 82 9 chr1 171867191 171867424 -25328008 + Charlie13b DNA Charlie 50 299 -213 5 1896 990 200 45 0 chr1 171868191 171868391 -25327041 + B3 SINE B2 1 209 -7 5 1896 249 108 0 0 chr1 171868495 171868532 -25326900 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1896 182 291 18 0 chr1 171869509 171869564 -25325868 - L3 LINE CR1 -11 4478 4423 5 1896 243 303 45 18 chr1 171869819 171869930 -25325502 + MER103 DNA DNA 13 126 -40 5 1896 21 82 0 0 chr1 171871131 171871180 -25324252 + AT_rich Low_complexity Low_complexity 1 49 0 5 1896 180 97 0 0 chr1 171871757 171871788 -25323644 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1896 252 0 0 0 chr1 171871862 171871890 -25323542 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1896 1100 72 7 0 chr1 171872030 171872183 -25323249 + B2_Mm2 SINE B2 1 154 -41 5 1896 294 194 0 5 chr1 171872216 171872281 -25323151 + B2_Mm2 SINE B2 47 109 -107 5 1896 244 98 0 38 chr1 171872271 171872324 -25323108 + B2_Mm1t SINE B2 139 189 -4 5 1896 283 264 0 14 chr1 171872320 171872393 -25323039 + ID_B1 SINE B4 143 214 -10 5 1896 553 276 0 47 chr1 171872554 171872725 -25322707 - RSINE1 SINE B4 0 165 3 5 1896 21 0 0 0 chr1 171872796 171872817 -25322615 + AT_rich Low_complexity Low_complexity 1 21 0 5 1896 32 0 0 0 chr1 171873117 171873149 -25322283 + AT_rich Low_complexity Low_complexity 1 32 0 5 1896 983 253 91 47 chr1 171873597 171873958 -25321474 + MTEa LTR MaLR 3 379 0 5 1896 1032 95 0 37 chr1 171874278 171874442 -25320990 - RLTR25B LTR ERVK 0 1103 946 5 1896 259 91 25 49 chr1 171874467 171874548 -25320884 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 5 1896 22 35 0 0 chr1 171874551 171874580 -25320852 + AT_rich Low_complexity Low_complexity 1 29 0 5 1896 4165 137 53 30 chr1 171874602 171875401 -25320031 - RLTR25B LTR ERVK -189 839 23 5 1896 2369 169 35 2 chr1 171875586 171875990 -25319442 - MTC LTR MaLR 0 421 5 5 1896 562 30 0 0 chr1 171876920 171876986 -25318446 - L1Md_F2 LINE L1 -309 6273 6208 5 1896 480 0 0 0 chr1 171876986 171877044 -25318388 + L1Md_F3 LINE L1 6513 6570 -14 5 1896 1159 235 27 100 chr1 171878337 171878658 -25316774 - RLTR18B LTR ERVK -170 342 41 5 1896 1069 175 32 5 chr1 171878658 171878876 -25316556 + URR1A DNA MER1_type 3 226 0 5 1896 1159 235 27 100 chr1 171878876 171878923 -25316509 - RLTR18B LTR ERVK -472 40 1 5 1896 270 289 24 12 chr1 171879110 171879194 -25316238 + MER46C DNA MER2_type 3 87 -251 5 1896 835 214 6 0 chr1 171880887 171881046 -25314386 - B3 SINE B2 -24 192 33 5 1896 742 107 0 0 chr1 171881046 171881158 -25314274 + B1_Mus1 SINE Alu 1 112 -36 5 1896 236 154 0 0 chr1 171881154 171881193 -25314239 - B3 SINE B2 -175 41 3 5 1896 290 252 120 36 chr1 171881301 171881680 -25313752 + L1M2 LINE L1 2969 3385 -2761 5 1896 183 42 0 0 chr1 171884390 171884414 -25311018 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1896 557 221 7 97 chr1 171884424 171884522 -25310910 + B1_Mur1 SINE Alu 7 95 -54 5 1896 1474 217 51 36 chr1 171884522 171884933 -25310499 + MTD LTR MaLR 1 417 -2 6 1896 557 221 7 97 chr1 171884933 171884989 -25310443 + B1_Mur1 SINE Alu 96 147 -2 5 1896 232 281 0 0 chr1 171887095 171887152 -25308280 - L1MC LINE L1 -2449 5433 5377 6 1896 455 294 119 0 chr1 171888027 171888187 -25307245 - B3A SINE B2 0 198 20 6 1896 779 256 85 0 chr1 171888802 171889001 -25306431 - B3 SINE B2 0 216 1 6 1896 527 163 296 0 chr1 171889280 171889449 -25305983 - URR1B DNA MER1_type 0 225 7 6 1896 24 85 0 0 chr1 171890201 171890260 -25305172 + AT_rich Low_complexity Low_complexity 1 59 0 6 1896 216 0 0 0 chr1 171891032 171891056 -25304376 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1896 370 300 69 0 chr1 171891556 171891686 -25303746 + L1MC3 LINE L1 6600 6738 -1047 6 1896 546 272 117 23 chr1 171891844 171892100 -25303332 + L1MC3 LINE L1 6983 7262 -523 6 1896 344 212 121 89 chr1 171892151 171892275 -25303157 - B1F SINE Alu -11 138 11 6 1896 710 279 140 59 chr1 171892275 171892697 -25302735 + L1MC3 LINE L1 7301 7756 -29 6 1896 374 248 34 68 chr1 171893248 171893365 -25302067 - PB1D7 SINE Alu -1 119 7 6 1896 261 0 0 0 chr1 171893686 171893715 -25301717 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1896 180 0 0 0 chr1 171893715 171893734 -25301698 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1896 988 159 121 29 chr1 171895585 171895792 -25299640 - URR1A DNA MER1_type 0 226 1 6 1896 207 69 0 0 chr1 171898014 171898043 -25297389 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1896 327 105 0 0 chr1 171899824 171899881 -25295551 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1896 391 225 13 80 chr1 171900478 171900628 -25294804 - RMER30 DNA MER1_type -29 173 34 6 1896 216 329 43 0 chr1 171905309 171905379 -25290053 + ID2 SINE ID 9 81 -2 6 1896 755 39 10 0 chr1 171907356 171907459 -25287973 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1896 492 207 18 18 chr1 171909223 171909336 -25286096 + PB1D10 SINE Alu 3 115 -2 6 1896 363 172 0 179 chr1 171910659 171910764 -25284668 + MTC LTR MaLR 1 86 -335 6 1896 848 172 254 48 chr1 171910764 171911016 -25284416 + RLTR9C LTR ERVK 1 304 -133 6 1896 1014 149 300 4 chr1 171911057 171911320 -25284112 + MTC LTR MaLR 81 421 0 6 1896 200 59 29 0 chr1 171911869 171911903 -25283529 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1896 396 0 0 0 chr1 171912277 171912321 -25283111 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 6 1896 467 49 0 0 chr1 171912321 171912382 -25283050 - B1_Mus2 SINE Alu -12 135 75 6 1896 890 16 0 47 chr1 171913242 171913369 -25282063 - L1Md_F3 LINE L1 -14 6570 6450 6 1896 420 248 102 62 chr1 171913464 171913649 -25281783 + B3A SINE B2 30 211 -5 6 1896 188 135 27 0 chr1 171914323 171914360 -25281072 + (TAA)n Simple_repeat Simple_repeat 1 38 0 6 1896 351 0 0 0 chr1 171915630 171915669 -25279763 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1896 453 36 0 0 chr1 171919280 171919335 -25276097 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 6 1896 315 0 0 0 chr1 171919360 171919395 -25276037 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1896 1181 29 0 0 chr1 171919395 171919532 -25275900 - B1_Mm SINE Alu -10 137 1 6 1896 1309 120 0 5 chr1 171919532 171919723 -25275709 - B2_Mm2 SINE B2 -4 191 1 6 1896 685 298 47 54 chr1 171921970 171922247 -25273185 + Lx8 LINE L1 7170 7444 -29 6 1896 354 312 55 34 chr1 171923130 171923276 -25272156 + B1F2 SINE Alu 1 149 0 6 1896 30 59 0 0 chr1 171923302 171923353 -25272079 + AT_rich Low_complexity Low_complexity 1 51 0 6 1896 324 0 0 0 chr1 171923484 171923520 -25271912 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1896 1426 254 33 14 chr1 171923520 171923884 -25271548 + MTEa LTR MaLR 6 376 -3 6 1896 3408 40 2 0 chr1 171924289 171924684 -25270748 + MTA_Mm LTR MaLR 1 396 0 6 1896 24 0 0 0 chr1 171929840 171929864 -25265568 + AT_rich Low_complexity Low_complexity 1 24 0 6 1896 979 101 0 12 chr1 171931582 171931743 -25263689 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 6 1896 378 246 32 37 chr1 171932969 171933107 -25262325 + MTEa LTR MaLR 244 379 0 6 1896 298 228 12 25 chr1 171937548 171937629 -25257803 + L1MEc LINE L1 115 194 -6206 6 1896 856 268 37 50 chr1 171937854 171938176 -25257256 + L1M3 LINE L1 4645 4962 -1178 6 1896 606 28 0 0 chr1 171938176 171938248 -25257184 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1896 252 277 188 39 chr1 171938273 171938555 -25256877 - MLT2B5 LTR ERVL -149 452 129 6 1896 752 235 102 77 chr1 171940113 171940325 -25255107 - Tigger7 DNA MER2_type -22 2469 2251 6 1896 470 261 28 119 chr1 171940325 171940543 -25254889 - B3A SINE B2 0 198 1 6 1896 752 235 102 77 chr1 171940543 171940643 -25254789 - Tigger7 DNA MER2_type -241 2250 2149 6 1896 285 318 63 11 chr1 171940619 171940798 -25254634 - Tigger7 DNA MER2_type -2300 191 4 6 1896 209 33 33 0 chr1 171942345 171942375 -25253057 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 6 1896 2151 251 34 8 chr1 171942458 171942956 -25252476 + Lx6 LINE L1 6945 7455 -5 6 1896 616 310 87 64 chr1 171943052 171943397 -25252035 + ORR1E LTR MaLR 1 353 -6 6 1896 230 211 123 27 chr1 171943888 171943961 -25251471 - ID4_ SINE ID 0 83 4 6 1896 538 255 27 34 chr1 171944042 171944188 -25251244 + RSINE1 SINE B4 6 150 -15 6 1896 306 50 0 0 chr1 171944188 171944228 -25251204 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1896 1191 113 49 0 chr1 171944313 171944498 -25250934 + B2_Mm2 SINE B2 2 195 0 6 1896 1108 78 0 0 chr1 171944503 171944644 -25250788 + B1_Mus2 SINE Alu 2 142 -5 6 1896 432 295 7 61 chr1 171945815 171945963 -25249469 + B1F SINE Alu 10 149 0 6 1896 1587 269 39 37 chr1 171945983 171946523 -25248909 + RLTR1 LTR ERV1 76 616 -8 6 1896 271 237 13 13 chr1 171946532 171946609 -25248823 + MMERGLN-int LTR ERV1 1 77 -3222 6 1896 30566 86 10 4 chr1 171946653 171950662 -25244770 + MMERGLN-int LTR ERV1 195 4227 -3329 6 1896 20954 59 3 1 chr1 171950657 171953153 -25242279 + MMERGLN-int LTR ERV1 5056 7556 0 6 1896 849 244 40 42 chr1 171953194 171953621 -25241811 + RLTR1 LTR ERV1 81 603 -21 6 1896 8027 36 1 1 chr1 171953843 171954873 -25240559 - L1Md_F3 LINE L1 -614 5968 4939 6 1896 4940 43 8 3 chr1 171954873 171955478 -25239954 + L1Md_F3 LINE L1 5963 6570 -14 6 1896 275 328 136 17 chr1 171957814 171957932 -25237500 + B1F1 SINE Alu 1 132 -17 6 1896 4803 26 0 0 chr1 171958249 171958793 -25236639 - L1Md_T LINE L1 -393 6189 5646 6 1896 3538 45 7 0 chr1 171958793 171959219 -25236213 + L1Md_T LINE L1 6154 6582 0 6 1896 21 0 0 0 chr1 171959219 171959240 -25236192 + AT_rich Low_complexity Low_complexity 1 21 0 6 1896 790 244 101 130 chr1 171959743 171960111 -25235321 + MTE2a LTR MaLR 9 365 -14 6 1896 504 149 0 0 chr1 171960891 171960985 -25234447 + (GA)n Simple_repeat Simple_repeat 2 95 0 6 1896 200 135 27 0 chr1 171961309 171961346 -25234086 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 6 1896 846 298 84 28 chr1 171961792 171962148 -25233284 + RCHARR1 DNA MER1_type 8 383 -591 6 1896 702 113 0 0 chr1 171962184 171962290 -25233142 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 6 1896 1036 161 10 35 chr1 171962318 171962517 -25232915 + B2_Mm2 SINE B2 2 195 0 6 1896 240 244 61 49 chr1 171962518 171962600 -25232832 + RCHARR1 DNA MER1_type 522 604 -370 6 1896 297 0 0 0 chr1 171963415 171963448 -25231984 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 6 1896 392 232 113 63 chr1 171963604 171963825 -25231607 + L1MC3 LINE L1 5522 5753 -411 6 1896 360 145 29 14 chr1 171964112 171964182 -25231250 + RMER30 DNA MER1_type 8 78 -124 6 1896 311 0 0 25 chr1 171964197 171964237 -25231195 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1896 689 86 146 49 chr1 171964246 171964369 -25231063 + B2_Mm2 SINE B2 3 137 -58 6 1896 270 216 27 0 chr1 171964379 171964453 -25230979 + RMER30 DNA MER1_type 96 171 -31 6 1896 255 186 0 0 chr1 171964648 171964691 -25230741 - ID SINE ID -178 46 4 6 1896 407 202 0 0 chr1 171964868 171964947 -25230485 - B3 SINE B2 -136 80 2 6 1897 648 0 0 0 chr1 171966612 171966684 -25228748 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 6 1897 2018 217 45 64 chr1 171966697 171967075 -25228357 + L1MC3 LINE L1 6510 6870 -915 6 1897 357 24 0 0 chr1 171967075 171967117 -25228315 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1897 2018 217 45 64 chr1 171967117 171967362 -25228070 + L1MC3 LINE L1 6871 7121 -664 6 1897 1005 74 0 0 chr1 171967467 171967602 -25227830 + (CTATT)n Simple_repeat Simple_repeat 1 135 0 6 1897 675 273 67 19 chr1 171968291 171968500 -25226932 + B4A SINE B4 2 220 -72 6 1897 889 216 67 5 chr1 171969584 171969779 -25225653 + B3 SINE B2 4 210 -6 6 1897 551 279 89 41 chr1 171970090 171970359 -25225073 - B4A SINE B4 -6 286 5 6 1897 279 0 0 0 chr1 171970819 171970850 -25224582 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1897 626 144 28 23 chr1 171971864 171972041 -25223391 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 1897 221 226 62 37 chr1 171972054 171972215 -25223217 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 6 1897 360 176 0 0 chr1 171972298 171972366 -25223066 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1897 441 0 0 0 chr1 171974160 171974209 -25221223 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1897 285 89 0 0 chr1 171974621 171974666 -25220766 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 6 1897 431 266 19 19 chr1 171974852 171975013 -25220419 + MLT1G3 LTR MaLR 229 389 -206 6 1897 977 105 13 0 chr1 171975454 171975606 -25219826 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 6 1897 6941 65 27 5 chr1 171975611 171976509 -25218923 - L1_Mus3 LINE L1 -12 6626 5709 6 1897 1415 163 124 28 chr1 171976509 171976800 -25218632 - ORR1C2 LTR MaLR -65 319 1 6 1897 273 57 0 0 chr1 171976810 171976845 -25218587 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1897 945 50 0 0 chr1 171976845 171976964 -25218468 + (TG)n Simple_repeat Simple_repeat 2 120 0 6 1897 227 256 108 12 chr1 171977361 171977444 -25217988 - MIRb SINE MIR 0 268 178 6 1897 1739 268 86 25 chr1 171977685 171978289 -25217143 - Lx8 LINE L1 -2 7471 6831 6 1897 429 257 0 0 chr1 171979185 171979286 -25216146 + PB1D7 SINE Alu 1 101 -19 6 1897 300 83 0 0 chr1 171980609 171980657 -25214775 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 6 1897 280 295 79 32 chr1 171980749 171980875 -25214557 - ID_B1 SINE B4 -8 216 85 6 1897 201 296 130 20 chr1 171981762 171981862 -25213570 + MIR SINE MIR 118 228 -34 6 1897 344 336 70 28 chr1 171983500 171983714 -25211718 + MIRb SINE MIR 38 260 -8 6 1897 182 159 0 43 chr1 171984167 171984213 -25211219 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 6 1897 427 310 101 29 chr1 171984266 171984611 -25210821 - L1ME3A LINE L1 -269 5904 5535 7 1897 603 232 90 75 chr1 171985514 171985836 -25209596 + RLTR15 LTR ERVK 3 329 -30 7 1897 447 276 75 56 chr1 171985917 171986078 -25209354 + B3A SINE B2 2 165 -33 7 1897 244 368 77 0 chr1 171987266 171987383 -25208049 + MIR SINE MIR 18 143 -119 7 1897 264 316 121 10 chr1 171988555 171988753 -25206679 + MIR SINE MIR 14 233 -29 7 1897 2015 258 83 13 chr1 171988932 171989532 -25205900 - Lx8 LINE L1 0 7473 6832 7 1897 632 267 12 52 chr1 171989988 171990201 -25205231 + B4A SINE B4 70 271 -21 7 1897 231 36 0 0 chr1 171990277 171990305 -25205127 + (ATG)n Simple_repeat Simple_repeat 2 29 0 7 1897 249 193 116 35 chr1 171991061 171991147 -25204285 + MIR SINE MIR 55 147 -115 7 1897 260 361 93 28 chr1 171991675 171991857 -25203575 - MIR SINE MIR -67 195 2 7 1897 708 12 0 0 chr1 171991989 171992070 -25203362 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1897 439 82 0 27 chr1 171992460 171992535 -25202897 + (TTTTC)n Simple_repeat Simple_repeat 3 75 0 7 1897 919 93 13 13 chr1 171992825 171992977 -25202455 - L1_Mus3 LINE L1 -3 6635 6484 7 1897 389 290 108 36 chr1 171993191 171993470 -25201962 - L1MD LINE L1 -1988 4158 3860 7 1897 234 350 8 0 chr1 171993577 171993694 -25201738 - L1MD LINE L1 -3861 2285 2168 7 1897 244 292 180 10 chr1 171993716 171993892 -25201540 - MIRb SINE MIR -56 212 14 7 1897 337 257 45 77 chr1 171994720 171994876 -25200556 + MLT1A0 LTR MaLR 198 348 -17 7 1897 194 300 43 0 chr1 171996067 171996137 -25199295 + MIR3 SINE MIR 112 184 -24 7 1897 440 270 43 54 chr1 171996251 171996435 -25198997 - MIRb SINE MIR -23 245 64 7 1897 445 129 53 11 chr1 171996598 171996689 -25198743 - ORR1D1 LTR MaLR -4 370 276 7 1897 411 201 119 60 chr1 171996689 171996874 -25198558 + RLTR15 LTR ERVK 1 196 -163 7 1897 798 255 17 100 chr1 171997064 171997364 -25198068 - ORR1D1 LTR MaLR -88 306 13 7 1897 612 341 129 27 chr1 171997808 171998142 -25197290 - Lx8 LINE L1 -277 7196 6829 7 1897 227 31 0 30 chr1 171998173 171998206 -25197226 + (ATG)n Simple_repeat Simple_repeat 3 34 0 7 1897 287 277 118 21 chr1 171999045 171999189 -25196243 + MIRb SINE MIR 85 242 -26 7 1897 834 286 8 40 chr1 172000355 172000606 -25194826 + B4 SINE B4 37 279 -13 1 1897 180 294 0 0 chr1 172000652 172000737 -25194695 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1897 964 262 91 48 chr1 172001280 172001697 -25193735 + L1MA5 LINE L1 5566 6000 -300 3 1897 413 314 74 63 chr1 172002511 172002780 -25192652 + B4 SINE B4 2 273 -19 4 1897 1528 53 11 5 chr1 172002924 172003113 -25192319 + B2_Mm1a SINE B2 1 190 -3 5 1897 837 262 46 56 chr1 172003230 172003590 -25191842 + ORR1E LTR MaLR 4 377 -2 6 1897 1739 192 48 18 chr1 172003697 172004089 -25191343 + MTD LTR MaLR 8 411 -8 7 1897 272 318 99 16 chr1 172004114 172004306 -25191126 - MIR SINE MIR -27 235 28 8 1897 531 0 0 0 chr1 172005499 172005558 -25189874 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1897 392 129 0 0 chr1 172005987 172006049 -25189383 + MT2B LTR ERVL 1 62 -539 1 1897 228 253 104 26 chr1 172006049 172006064 -25189368 + MTE2b LTR MaLR 1 83 -296 1 1897 522 0 0 0 chr1 172006064 172006122 -25189310 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1897 472 148 17 17 chr1 172006122 172006239 -25189193 + (CAGAGA)n Simple_repeat Simple_repeat 4 120 0 1 1897 237 258 8 16 chr1 172006216 172006338 -25189094 + GA-rich Low_complexity Low_complexity 4 124 0 1 1897 847 296 80 30 chr1 172006650 172006988 -25188444 + ORR1E LTR MaLR 2 356 -3 1 1897 753 277 91 0 chr1 172007422 172007675 -25187757 + Lx8 LINE L1 6930 7205 -268 1 1897 459 308 116 26 chr1 172007679 172007989 -25187443 - Charlie4a DNA MER1_type -22 486 149 1 1897 321 303 49 0 chr1 172008332 172008454 -25186978 + MamRep434 DNA TcMar 61 188 -238 1 1897 181 133 67 0 chr1 172008900 172008930 -25186502 + MIRc SINE MIR 44 75 -193 1 1897 225 0 0 0 chr1 172009025 172009050 -25186382 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1897 277 327 89 18 chr1 172009108 172009276 -25186156 + MLT1C LTR MaLR 284 463 -4 2 1897 283 235 55 73 chr1 172009498 172009608 -25185824 + MER96B DNA hAT 308 415 -2 2 1897 271 234 45 30 chr1 172010765 172010831 -25184601 - ID4_ SINE ID -14 69 3 2 1897 358 246 35 35 chr1 172010841 172010988 -25184444 - B1F SINE Alu -2 147 11 2 1897 357 24 0 0 chr1 172011043 172011085 -25184347 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1897 402 21 0 0 chr1 172012066 172012113 -25183319 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1897 1283 258 62 30 chr1 172012417 172012821 -25182611 + MTD LTR MaLR 3 419 0 2 1897 204 125 0 0 chr1 172014757 172014789 -25180643 + (CACG)n Simple_repeat Simple_repeat 4 35 0 2 1897 452 275 16 55 chr1 172014789 172014906 -25180526 - RSINE1 SINE B4 -9 156 44 2 1897 684 178 0 0 chr1 172015836 172016016 -25179416 + CT-rich Low_complexity Low_complexity 1 180 0 3 1897 369 148 0 0 chr1 172016036 172016117 -25179315 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1897 477 0 0 0 chr1 172017358 172017411 -25178021 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1897 335 0 73 0 chr1 172017852 172017907 -25177525 + (CAA)n Simple_repeat Simple_repeat 2 60 0 3 1897 216 296 0 0 chr1 172018327 172018381 -25177051 - L2b LINE L2 -20 3355 3302 3 1897 853 295 80 11 chr1 172019253 172019616 -25175816 - Charlie1b DNA MER1_type -110 413 26 3 1897 194 33 67 0 chr1 172019726 172019756 -25175676 + (TATG)n Simple_repeat Simple_repeat 1 32 0 3 1897 432 0 0 0 chr1 172019945 172019993 -25175439 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1897 227 369 24 0 chr1 172020067 172020151 -25175281 - LTR86A1 LTR ERVL -121 392 307 3 1897 423 0 0 0 chr1 172021242 172021289 -25174143 + (TAA)n Simple_repeat Simple_repeat 3 49 0 3 1897 192 40 0 0 chr1 172022478 172022503 -25172929 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 4 1897 228 35 0 0 chr1 172022504 172022533 -25172899 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1897 1071 243 45 7 chr1 172022585 172022854 -25172578 - B4A SINE B4 -13 279 1 4 1897 285 54 0 0 chr1 172023969 172024006 -25171426 + U2 snRNA snRNA 1 37 -151 4 1897 878 274 85 23 chr1 172024740 172024998 -25170434 + B4 SINE B4 15 288 -4 4 1897 375 23 0 0 chr1 172025010 172025054 -25170378 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1897 1643 229 29 27 chr1 172025400 172025813 -25169619 - MTD LTR MaLR 0 419 6 4 1897 859 247 67 133 chr1 172026315 172026721 -25168711 + MTEa LTR MaLR 1 379 0 4 1897 1179 68 0 0 chr1 172026759 172026905 -25168527 + B1_Mus2 SINE Alu 2 147 0 4 1897 28 0 0 0 chr1 172027053 172027081 -25168351 + AT_rich Low_complexity Low_complexity 1 28 0 4 1897 3007 26 12 0 chr1 172027280 172027622 -25167810 - ORR1A0 LTR MaLR 0 346 1 5 1897 14011 42 39 1 chr1 172027622 172029348 -25166084 - ORR1A0-int LTR MaLR 0 1792 1 5 1897 3775 53 14 62 chr1 172029348 172029866 -25165566 - MT2_Mm LTR ERVL 0 493 1 5 1897 721 226 140 0 chr1 172029936 172030122 -25165310 - B3 SINE B2 -4 212 1 5 1897 41 48 0 0 chr1 172030304 172030366 -25165066 + AT_rich Low_complexity Low_complexity 1 62 0 5 1897 1682 36 0 0 chr1 172030649 172030842 -25164590 + B2_Mm1t SINE B2 1 193 0 5 1897 1072 218 82 75 chr1 172030986 172031304 -25164128 + Lx5 LINE L1 6731 7050 0 5 1897 627 167 0 0 chr1 172031320 172031434 -25163998 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 1897 427 281 11 81 chr1 172031685 172031859 -25163573 - RSINE1 SINE B4 -1 164 3 5 1897 274 283 85 0 chr1 172032374 172032480 -25162952 - L1MC1 LINE L1 0 6333 6219 5 1897 239 298 43 9 chr1 172032530 172032645 -25162787 - L1MD LINE L1 -2293 5702 5584 5 1897 364 42 0 0 chr1 172032646 172032694 -25162738 - HAL1-3A_ME LINE L1 -835 2023 1976 6 1897 243 0 0 0 chr1 172032731 172032758 -25162674 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1897 374 39 39 0 chr1 172032771 172032823 -25162609 - HAL1-3A_ME LINE L1 -838 2020 1967 6 1897 1259 34 0 0 chr1 172032921 172033067 -25162365 - B1_Mus2 SINE Alu -1 146 1 6 1897 399 243 142 7 chr1 172033067 172033208 -25162224 - L1MC LINE L1 -869 5277 5118 6 1897 558 285 79 8 chr1 172033298 172033539 -25161893 - L1MC LINE L1 -1242 4904 4647 6 1897 338 258 103 0 chr1 172033540 172033637 -25161795 - PB1D10 SINE Alu -2 115 9 6 1897 548 269 7 14 chr1 172033905 172034048 -25161384 + B1F1 SINE Alu 1 142 -7 6 1897 641 133 0 7 chr1 172034355 172034491 -25160941 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 1897 439 254 62 0 chr1 172035050 172035180 -25160252 + L1MC2 LINE L1 6204 6341 -3 6 1897 626 264 0 49 chr1 172035482 172035665 -25159767 + B4 SINE B4 14 187 -105 6 1897 25 51 0 0 chr1 172035699 172035738 -25159694 + AT_rich Low_complexity Low_complexity 1 39 0 6 1897 606 184 0 0 chr1 172036115 172036218 -25159214 + B3A SINE B2 1 103 -95 7 1897 215 31 31 0 chr1 172036220 172036252 -25159180 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1897 1654 26 11 0 chr1 172036252 172036443 -25158989 - B2_Mm1a SINE B2 0 193 1 7 1897 277 317 24 0 chr1 172036445 172036527 -25158905 + B3A SINE B2 90 173 -25 7 1897 360 0 0 0 chr1 172036528 172036568 -25158864 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1897 203 326 58 0 chr1 172037570 172037656 -25157776 - MER5B DNA MER1_type -12 166 76 7 1897 279 215 14 122 chr1 172038680 172038754 -25156678 + B4A SINE B4 5 70 -222 7 1897 410 198 0 0 chr1 172038765 172038851 -25156581 + B4 SINE B4 127 212 -80 7 1897 189 237 0 0 chr1 172039655 172039714 -25155718 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1897 687 25 0 0 chr1 172041430 172041511 -25153921 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 1897 21 36 0 0 chr1 172041644 172041672 -25153760 + AT_rich Low_complexity Low_complexity 1 28 0 7 1897 659 301 24 51 chr1 172042952 172043246 -25152186 + B4A SINE B4 7 292 0 8 1897 369 0 0 0 chr1 172043277 172043318 -25152114 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1897 487 237 220 23 chr1 172043567 172043740 -25151692 - B3 SINE B2 -3 213 7 8 1897 242 267 33 11 chr1 172043961 172044052 -25151380 + LTR88c LTR Genie? 769 861 -1 8 1897 250 229 42 14 chr1 172044221 172044292 -25151140 + ID4 SINE ID 9 81 -2 8 1897 2982 24 0 0 chr1 172045928 172046265 -25149167 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 1897 56765 19 17 7 chr1 172046265 172052675 -25142757 + IAPEz-int LTR ERVK 8 6481 0 8 1897 2982 24 0 0 chr1 172052675 172053012 -25142420 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 1897 338 321 15 0 chr1 172053036 172053167 -25142265 - MIRc SINE MIR -24 244 112 8 1897 1812 186 170 0 chr1 172054540 172054986 -25140446 + MT2A LTR ERVL 12 533 0 8 1897 439 272 114 54 chr1 172056134 172056302 -25139130 + B3A SINE B2 6 182 -34 8 1897 468 72 0 0 chr1 172056302 172056371 -25139061 + (CAGAGA)n Simple_repeat Simple_repeat 6 74 0 8 1897 356 307 85 94 chr1 172056371 172056414 -25139018 + B3 SINE B2 183 215 -1 8 1897 889 196 68 16 chr1 172056448 172056640 -25138792 + B3 SINE B2 1 202 -14 9 1897 293 211 113 0 chr1 172057137 172057208 -25138224 - LTR50 LTR ERVL -700 95 17 9 1897 2229 127 50 42 chr1 172057437 172057841 -25137591 + MTB_Mm LTR MaLR 1 407 0 9 1897 558 253 60 0 chr1 172058174 172058324 -25137108 - L1MA6 LINE L1 -6 6294 6136 9 1897 801 39 0 0 chr1 172058347 172058451 -25136981 - B2_Mm2 SINE B2 -88 107 4 9 1897 472 305 58 32 chr1 172058645 172058801 -25136631 - RSINE1 SINE B4 0 165 6 9 1897 498 298 25 0 chr1 172058817 172058975 -25136457 - L1MA6 LINE L1 -357 5943 5782 9 1897 783 173 0 0 chr1 172059212 172059339 -25136093 + B3 SINE B2 2 128 -88 9 1897 21 0 0 0 chr1 172060003 172060024 -25135408 + AT_rich Low_complexity Low_complexity 1 21 0 9 1897 24 53 0 0 chr1 172060057 172060095 -25135337 + AT_rich Low_complexity Low_complexity 1 38 0 9 1897 374 231 43 21 chr1 172060319 172060412 -25135020 + PB1D7 SINE Alu 18 112 -8 9 1897 442 189 0 19 chr1 172060421 172060529 -25134903 + GA-rich Low_complexity Low_complexity 3 108 0 1 1897 243 125 0 0 chr1 172060547 172060587 -25134845 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1897 303 28 0 0 chr1 172060600 172060636 -25134796 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1897 354 23 0 0 chr1 172060636 172060678 -25134754 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1897 189 107 0 0 chr1 172061793 172061821 -25133611 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1897 523 244 76 0 chr1 172062583 172062714 -25132718 + ID_B1 SINE B4 81 221 -3 1 1897 571 281 111 0 chr1 172062738 172062909 -25132523 + B4A SINE B4 6 195 -97 1 1897 279 0 0 0 chr1 172062928 172062959 -25132473 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1897 716 303 96 38 chr1 172063082 172063501 -25131931 + L1M4 LINE L1 285 727 -5815 1 1897 1375 97 0 44 chr1 172063520 172063724 -25131708 + B2_Mm2 SINE B2 1 195 0 1 1897 854 159 0 6 chr1 172063724 172063889 -25131543 + GA-rich Low_complexity Low_complexity 3 166 0 1 1897 529 306 188 28 chr1 172063889 172064368 -25131064 + L1M4 LINE L1 719 1273 -5269 1 1897 308 265 35 35 chr1 172064444 172064530 -25130902 + B4 SINE B4 10 95 -197 1 1897 2947 260 110 30 chr1 172064536 172065517 -25129915 + Lx8 LINE L1 6386 7554 -90 1 1897 458 254 33 86 chr1 172065569 172065614 -25129818 - MTEa LTR MaLR -236 143 110 1 1897 189 0 0 0 chr1 172065614 172065635 -25129797 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1897 458 254 33 86 chr1 172065635 172065740 -25129692 - MTEa LTR MaLR -270 109 1 1 1897 233 246 87 0 chr1 172066090 172066159 -25129273 - tRNA-Ala-GCA tRNA tRNA 0 75 1 1 1897 200 333 75 0 chr1 172066384 172066477 -25128955 + MIR SINE MIR 45 144 -64 1 1897 234 327 41 66 chr1 172066849 172066970 -25128462 - PB1D7 SINE Alu 0 120 3 1 1897 304 340 143 7 chr1 172066970 172067017 -25128415 - ID_B1 SINE B4 -121 103 36 1 1897 279 254 113 0 chr1 172067135 172067206 -25128226 + RMER30 DNA MER1_type 7 85 -117 1 1897 366 173 0 0 chr1 172067607 172067682 -25127750 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1897 232 293 53 0 chr1 172068048 172068123 -25127309 + MIR SINE MIR 29 107 -155 1 1897 2797 90 121 5 chr1 172068467 172068880 -25126552 + L1_Mus3 LINE L1 6175 6635 -3 1 1897 806 308 109 73 chr1 172069081 172069575 -25125857 + MLT2B1 LTR ERVL 2 513 -7 1 1897 1803 199 92 22 chr1 172069809 172070001 -25125431 + RMER5 LTR ERV1 2 196 -338 1 1897 282 29 0 0 chr1 172070001 172070036 -25125396 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1897 1803 199 92 22 chr1 172070036 172070332 -25125100 + RMER5 LTR ERV1 197 524 -10 1 1897 353 254 18 35 chr1 172074043 172074157 -25121275 - MER3 DNA MER1_type -63 146 35 1 1897 856 254 5 0 chr1 172074471 172074664 -25120768 + ID_B1 SINE B4 9 202 -22 1 1897 2024 239 101 50 chr1 172074679 172075325 -25120107 + Lx9 LINE L1 6781 7459 -185 1 1897 329 208 81 181 chr1 172075325 172075584 -25119848 + Lx9 LINE L1 7411 7643 -1 1 1897 388 139 12 12 chr1 172075634 172075714 -25119718 + GA-rich Low_complexity Low_complexity 1 80 0 1 1897 453 36 0 0 chr1 172076955 172077010 -25118422 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1897 764 160 8 0 chr1 172077012 172077131 -25118301 - B3 SINE B2 -96 120 1 1 1897 1050 86 123 41 chr1 172077164 172077334 -25118098 + B2_Mm2 SINE B2 3 186 -9 1 1897 304 288 44 26 chr1 172077542 172077656 -25117776 + PB1D10 SINE Alu 1 116 -1 1 1897 1019 140 0 0 chr1 172078557 172078707 -25116725 + B1_Mur4 SINE Alu 1 150 0 1 1897 326 255 51 0 chr1 172079882 172079980 -25115452 + PB1D10 SINE Alu 14 116 -1 1 1897 234 0 0 0 chr1 172081023 172081049 -25114383 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1897 32 0 0 0 chr1 172081397 172081429 -25114003 + AT_rich Low_complexity Low_complexity 1 32 0 1 1897 744 37 0 9 chr1 172081590 172081698 -25113734 - L1Md_T LINE L1 0 6582 6476 1 1897 399 118 0 0 chr1 172081796 172081872 -25113560 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1897 858 109 21 14 chr1 172082191 172082331 -25113101 + B1_Mur3 SINE Alu 9 149 0 1 1897 267 327 0 29 chr1 172082507 172082611 -25112821 + PB1D7 SINE Alu 1 101 -19 1 1897 213 65 0 0 chr1 172082611 172082642 -25112790 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 1 1897 29 0 0 0 chr1 172083541 172083570 -25111862 + AT_rich Low_complexity Low_complexity 1 29 0 1 1897 210 327 0 0 chr1 172083724 172083779 -25111653 + B4 SINE B4 81 135 -157 1 1897 233 225 0 0 chr1 172083740 172083780 -25111652 + B1F2 SINE Alu 12 51 -98 1 1897 351 242 14 16 chr1 172084476 172084574 -25110858 + B1F SINE Alu 19 119 -1 1 1897 889 160 71 0 chr1 172084734 172084903 -25110529 - B2_Mm1t SINE B2 0 193 13 1 1897 1376 82 11 0 chr1 172084904 172085086 -25110346 + B2_Mm1t SINE B2 2 185 -8 1 1897 272 229 164 0 chr1 172085355 172085477 -25109955 - L1MA6 LINE L1 0 6300 6159 1 1897 548 285 64 90 chr1 172085476 172085562 -25109870 + L1MA8 LINE L1 5450 5511 -789 1 1897 737 191 184 6 chr1 172085562 172085741 -25109691 - B3 SINE B2 -4 212 2 1 1897 566 285 64 90 chr1 172085741 172086075 -25109357 + L1MA8 LINE L1 5512 5859 -441 1 1897 435 19 0 0 chr1 172086316 172086368 -25109064 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1897 244 326 33 0 chr1 172086475 172086567 -25108865 - L3 LINE CR1 -1078 3411 3317 1 1897 1634 27 21 0 chr1 172086710 172086898 -25108534 + B2_Mm1t SINE B2 2 193 0 1 1897 258 105 0 0 chr1 172087798 172087836 -25107596 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1 1897 673 268 111 0 chr1 172087864 172088062 -25107370 + ID_B1 SINE B4 5 224 0 1 1897 372 222 22 0 chr1 172088458 172088548 -25106884 - BC1_Mm scRNA scRNA -54 98 7 1 1897 647 241 85 25 chr1 172089519 172089719 -25105713 + B3 SINE B2 5 216 0 1 1897 728 202 169 0 chr1 172089938 172090121 -25105311 + B3 SINE B2 2 215 -1 1 1897 586 313 89 39 chr1 172090418 172090867 -25104565 + L1MEg1 LINE L1 81 604 -5848 1 1897 289 260 178 10 chr1 172091823 172091924 -25103508 + B3A SINE B2 17 134 -64 1 1897 348 308 54 0 chr1 172092386 172092516 -25102916 - ID_B1 SINE B4 -2 222 86 1 1897 284 270 36 21 chr1 172092961 172093101 -25102331 + L1ME4a LINE L1 5979 6120 -4 1 1897 571 290 16 54 chr1 172094999 172095185 -25100247 + MTEa LTR MaLR 1 179 -200 1 1897 285 243 35 53 chr1 172095201 172095314 -25100118 + MTEa LTR MaLR 265 375 -4 1 1897 741 290 52 5 chr1 172095738 172095932 -25099500 + B3 SINE B2 1 203 -13 1 1897 263 250 59 12 chr1 172095987 172096072 -25099360 + B1F1 SINE Alu 22 110 -39 1 1897 223 255 0 0 chr1 172096097 172096144 -25099288 + ID4 SINE ID 28 74 -9 1 1897 209 170 36 36 chr1 172097362 172097417 -25098015 - MIRb SINE MIR -30 238 184 1 1898 1236 48 0 0 chr1 172098228 172098374 -25097058 + B1_Mus2 SINE Alu 2 147 0 1 1898 222 37 0 0 chr1 172098374 172098401 -25097031 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1898 310 304 122 0 chr1 172098529 172098644 -25096788 + RSINE1 SINE B4 8 136 -29 1 1898 942 291 94 15 chr1 172098661 172099146 -25096286 + L1MA4A LINE L1 5471 5969 -1675 1 1898 3342 57 22 0 chr1 172099154 172099608 -25095824 - MT2C_Mm LTR ERVL -11 464 1 1 1898 314 306 24 40 chr1 172100587 172100713 -25094719 - MIRb SINE MIR -121 147 24 1 1898 207 358 37 9 chr1 172100809 172100916 -25094516 + MIRb SINE MIR 34 143 -125 1 1898 1231 40 0 13 chr1 172100925 172101075 -25094357 - B1_Mus1 SINE Alu 0 148 1 1 1898 214 349 109 16 chr1 172101120 172101248 -25094184 + B1F SINE Alu 1 140 -9 1 1898 207 0 0 0 chr1 172101256 172101279 -25094153 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1898 268 272 36 24 chr1 172101725 172101808 -25093624 - L2b LINE L2 0 3375 3292 1 1898 957 123 27 0 chr1 172102348 172102494 -25092938 + B1_Mur4 SINE Alu 1 150 0 1 1898 255 61 0 0 chr1 172102541 172102574 -25092858 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1898 957 93 0 0 chr1 172102574 172102713 -25092719 - B1_Mm SINE Alu 0 147 9 1 1898 334 202 66 22 chr1 172103119 172103210 -25092222 + B1_Mur4 SINE Alu 1 95 -55 1 1898 616 158 0 0 chr1 172103213 172103314 -25092118 + B1_Mus2 SINE Alu 42 142 -5 1 1898 602 167 202 0 chr1 172103902 172104016 -25091416 + B1_Mus1 SINE Alu 1 137 -11 1 1898 186 43 0 0 chr1 172104017 172104040 -25091392 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1898 31 88 0 0 chr1 172104962 172105042 -25090390 + GC_rich Low_complexity Low_complexity 1 80 0 1 1898 216 0 0 0 chr1 172106725 172106749 -25088683 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1898 216 0 0 0 chr1 172106749 172106772 -25088660 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1898 510 149 0 0 chr1 172107348 172107435 -25087997 + (TATG)n Simple_repeat Simple_repeat 2 88 0 1 1898 23 54 0 0 chr1 172107508 172107545 -25087887 + AT_rich Low_complexity Low_complexity 1 37 0 1 1898 1173 111 35 0 chr1 172108545 172108716 -25086716 + B2_Mm1t SINE B2 3 179 -14 1 1898 204 226 19 0 chr1 172108725 172108778 -25086654 + (CAGAG)n Simple_repeat Simple_repeat 2 55 0 1 1898 294 146 0 35 chr1 172108782 172108839 -25086593 + B2_Mm2 SINE B2 47 101 -94 1 1898 1089 30 82 0 chr1 172108938 172109073 -25086359 + B1_Mus1 SINE Alu 3 148 0 1 1898 227 93 23 0 chr1 172109076 172109119 -25086313 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1898 1489 249 30 8 chr1 172109135 172109499 -25085933 + MTEb LTR MaLR 1 372 -7 1 1898 225 0 0 0 chr1 172109645 172109670 -25085762 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1898 1058 212 24 10 chr1 172109957 172110162 -25085270 - B3 SINE B2 -8 208 1 2 1898 715 147 121 0 chr1 172110405 172110521 -25084911 + B1_Mus2 SINE Alu 2 131 -16 2 1898 320 298 16 88 chr1 172111488 172111613 -25083819 + MLT1E1A LTR MaLR 294 429 -225 2 1898 532 202 19 28 chr1 172111970 172112077 -25083355 + RSINE1 SINE B4 13 118 -47 2 1898 219 299 0 56 chr1 172112136 172112147 -25083285 - B1F1 SINE Alu -76 73 7 2 1898 274 216 0 33 chr1 172112147 172112207 -25083225 - B4A SINE B4 -141 151 92 2 1898 358 145 0 38 chr1 172112222 172112301 -25083131 + CT-rich Low_complexity Low_complexity 1 76 0 2 1898 664 234 89 30 chr1 172112307 172112510 -25082922 - B3 SINE B2 0 216 2 2 1898 468 191 21 0 chr1 172112510 172112603 -25082829 - B4 SINE B4 -196 96 2 2 1898 553 234 11 11 chr1 172112640 172112764 -25082668 - B1F1 SINE Alu -2 125 2 2 1898 291 287 0 94 chr1 172112680 172112776 -25082656 - MT2B2 LTR ERVL -344 240 154 2 1898 414 0 0 0 chr1 172113220 172113266 -25082166 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1898 271 207 205 30 chr1 172113363 172113473 -25081959 + B1_Mur4 SINE Alu 5 150 0 2 1898 380 111 0 16 chr1 172113475 172113539 -25081893 + (GGA)n Simple_repeat Simple_repeat 3 65 0 2 1898 223 118 18 89 chr1 172113832 172113864 -25081568 + T-rich Low_complexity Low_complexity 27 56 0 2 1898 1212 48 0 0 chr1 172113864 172114010 -25081422 - B1_Mus2 SINE Alu 0 147 2 2 1898 223 118 18 89 chr1 172114010 172114033 -25081399 + T-rich Low_complexity Low_complexity 5 26 0 2 1898 717 236 138 80 chr1 172114214 172114750 -25080682 + MT2B LTR ERVL 1 598 -3 2 1898 758 177 57 0 chr1 172114817 172114958 -25080474 + B1_Mur4 SINE Alu 2 150 0 2 1898 684 284 121 23 chr1 172115477 172115733 -25079699 + B4 SINE B4 1 281 -11 2 1898 270 0 0 0 chr1 172115750 172115780 -25079652 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1898 1485 49 22 0 chr1 172115873 172116056 -25079376 + B2_Mm2 SINE B2 2 188 -7 2 1898 488 269 31 37 chr1 172116231 172116393 -25079039 + ID_B1 SINE B4 64 224 0 2 1898 1989 137 9 21 chr1 172116435 172116763 -25078669 + ORR1A3 LTR MaLR 1 324 -2 2 1898 257 178 12 88 chr1 172116766 172116846 -25078586 - L1M4b LINE L1 -4530 2804 2731 2 1898 286 272 42 42 chr1 172116839 172116958 -25078474 - L1M4b LINE L1 -4925 2409 2291 2 1898 456 234 0 10 chr1 172117571 172117682 -25077750 + B1F SINE Alu 9 113 -7 2 1898 231 204 61 0 chr1 172117849 172117898 -25077534 + polypyrimidine Low_complexity Low_complexity 1 52 0 2 1898 246 247 0 0 chr1 172118301 172118378 -25077054 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1898 548 294 7 7 chr1 172118380 172118527 -25076905 - B1F1 SINE Alu -2 147 1 2 1898 276 130 0 0 chr1 172119449 172119495 -25075937 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1898 471 238 19 89 chr1 172119803 172119960 -25075472 - B1F SINE Alu 0 149 4 2 1898 952 241 64 67 chr1 172120411 172120771 -25074661 - MTEa LTR MaLR -20 359 1 2 1898 1486 188 91 3 chr1 172121214 172121523 -25073909 + ORR1C1 LTR MaLR 2 337 -41 2 1898 529 273 101 65 chr1 172121648 172121926 -25073506 + B4A SINE B4 5 292 0 2 1898 313 260 164 40 chr1 172122106 172122258 -25073174 + MER5A DNA MER1_type 1 171 -18 2 1898 690 246 80 0 chr1 172122864 172123051 -25072381 - B3 SINE B2 -13 203 2 2 1898 24 0 0 0 chr1 172123096 172123120 -25072312 + AT_rich Low_complexity Low_complexity 1 24 0 2 1898 754 180 244 0 chr1 172123121 172123293 -25072139 - B3 SINE B2 0 216 3 2 1898 478 250 72 22 chr1 172123395 172123534 -25071898 + ID_B1 SINE B4 79 224 0 2 1898 491 229 18 27 chr1 172125594 172125706 -25069726 + PB1D10 SINE Alu 1 111 -6 2 1898 300 80 3 0 chr1 172126002 172126056 -25069376 + B1_Mus2 SINE Alu 86 140 -9 2 1898 279 0 0 0 chr1 172130578 172130609 -25064823 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1898 378 254 0 125 chr1 172130631 172130775 -25064657 - RSINE1 SINE B4 -36 129 4 2 1898 216 0 0 0 chr1 172131350 172131374 -25064058 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1898 302 228 152 0 chr1 172131427 172131519 -25063913 - B1F2 SINE Alu -34 115 10 2 1898 1000 273 29 14 chr1 172131767 172132042 -25063390 - B4A SINE B4 -11 281 3 2 1898 396 0 0 0 chr1 172132172 172132216 -25063216 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1898 646 292 26 22 chr1 172132321 172132594 -25062838 + B4A SINE B4 1 274 -18 2 1898 477 0 0 0 chr1 172132599 172132652 -25062780 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1898 266 286 209 56 chr1 172132675 172133268 -25062164 + Charlie2a DNA MER1_type 668 1351 -1510 2 1898 254 235 136 0 chr1 172133427 172133508 -25061924 + RSINE1 SINE B4 5 96 -69 2 1898 459 0 0 0 chr1 172133515 172133566 -25061866 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1898 213 255 18 7 chr1 172134408 172134463 -25060969 + Alu_5 SINE Alu 3 56 -93 2 1898 345 185 29 107 chr1 172135665 172135679 -25059753 - MT2B LTR ERVL -351 250 192 2 1898 589 84 0 0 chr1 172135679 172135762 -25059670 - B1_Mus1 SINE Alu -65 83 1 2 1898 28 0 0 0 chr1 172135799 172135827 -25059605 + AT_rich Low_complexity Low_complexity 1 28 0 2 1898 316 197 0 15 chr1 172135842 172135909 -25059523 - B3 SINE B2 -79 137 72 2 1898 2045 121 9 3 chr1 172136787 172137111 -25058321 + ORR1A3 LTR MaLR 1 326 0 2 1898 33 0 0 0 chr1 172137116 172137149 -25058283 + AT_rich Low_complexity Low_complexity 1 33 0 2 1898 733 174 8 8 chr1 172137838 172137971 -25057461 - B1_Mur4 SINE Alu -4 146 14 2 1898 578 202 9 0 chr1 172138541 172138655 -25056777 - PB1D7 SINE Alu -5 115 1 2 1898 414 299 68 68 chr1 172139262 172139481 -25055951 + MTEa LTR MaLR 1 219 -160 2 1898 27 0 0 0 chr1 172140279 172140306 -25055126 + AT_rich Low_complexity Low_complexity 1 27 0 2 1898 1154 55 0 14 chr1 172141400 172141538 -25053894 + B1_Mus1 SINE Alu 2 139 -9 2 1898 198 0 0 0 chr1 172141538 172141560 -25053872 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1898 233 0 62 0 chr1 172142114 172142146 -25053286 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1898 1149 58 0 0 chr1 172142146 172142284 -25053148 - B1_Mus1 SINE Alu -10 138 1 2 1898 1184 142 65 19 chr1 172142834 172143050 -25052382 - URR1A DNA MER1_type 0 226 1 2 1898 654 97 0 0 chr1 172143098 172143191 -25052241 + BC1_Mm scRNA scRNA 3 95 -57 2 1898 1242 48 0 0 chr1 172143202 172143349 -25052083 + B1_Mm SINE Alu 1 147 0 2 1898 314 138 0 17 chr1 172143707 172143766 -25051666 - B3A SINE B2 -127 71 14 2 1898 792 214 0 0 chr1 172144054 172144232 -25051200 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1898 312 27 0 0 chr1 172144410 172144447 -25050985 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 2 1898 253 182 0 68 chr1 172145672 172145731 -25049701 + ID4_ SINE ID 8 62 -21 2 1898 515 319 8 11 chr1 172145753 172145963 -25049469 - B3A SINE B2 -4 212 8 2 1898 698 201 41 24 chr1 172146292 172146486 -25048946 + B3 SINE B2 1 195 0 2 1898 447 277 55 35 chr1 172147082 172147284 -25048148 - L1MB3 LINE L1 -17 6166 5961 2 1898 324 0 0 0 chr1 172147672 172147708 -25047724 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1898 340 278 8 107 chr1 172147827 172147948 -25047484 + B4A SINE B4 53 161 -131 2 1898 492 201 96 15 chr1 172148868 172149004 -25046428 + ORR1B2-int LTR MaLR 1361 1507 -2 2 1898 1185 166 269 0 chr1 172148999 172149282 -25046150 + ORR1B2 LTR MaLR 1 359 -8 2 1898 189 0 0 0 chr1 172149458 172149479 -25045953 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1898 423 243 37 56 chr1 172149643 172149804 -25045628 + MYSERV6-int LTR ERVK 1 158 -6392 2 1898 356 314 64 74 chr1 172149907 172150158 -25045274 + MYSERV6-int LTR ERVK 60 308 -6242 2 1898 1119 52 0 0 chr1 172150158 172150293 -25045139 + B1_Mus2 SINE Alu 1 135 -12 2 1898 315 0 0 0 chr1 172150294 172150329 -25045103 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1898 1583 312 30 38 chr1 172150329 172151193 -25044239 + MYSERV6-int LTR ERVK 558 1414 -7545 2 1898 1360 275 72 96 chr1 172151185 172151916 -25043516 + MYSERV6-int LTR ERVK 4452 5165 -1385 2 1898 391 252 84 38 chr1 172151931 172152094 -25043338 + RMER4A LTR ERVK 291 565 -20 2 1898 3554 184 40 34 chr1 172152095 172152951 -25042481 + MYSERV6-int LTR ERVK 7813 8577 -382 2 1898 2243 154 38 14 chr1 172152953 172153375 -25042057 + RMER20A LTR ERVK 3 434 -82 2 1898 274 235 48 58 chr1 172153525 172153629 -25041803 + RLTR17 LTR ERVK 335 437 -255 2 1898 377 239 0 0 chr1 172153719 172153786 -25041646 + RMER20A LTR ERVK 450 516 0 2 1898 2010 191 8 8 chr1 172153790 172154190 -25041242 + MYSERV-int LTR ERVK 6148 6547 -3 2 1898 618 261 68 32 chr1 172154193 172154502 -25040930 + RLTR15 LTR ERVK 1 320 -39 2 1898 1061 151 82 36 chr1 172154919 172155139 -25040293 - ORR1A4 LTR MaLR -8 321 92 2 1898 1361 84 17 6 chr1 172155587 172155767 -25039665 + B2_Mm2 SINE B2 1 182 -13 2 1898 666 163 129 23 chr1 172156857 172156989 -25038443 + B1_Mur4 SINE Alu 5 150 0 2 1898 251 127 15 60 chr1 172156990 172157057 -25038375 + A-rich Low_complexity Low_complexity 3 66 0 2 1898 252 0 0 0 chr1 172157476 172157504 -25037928 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1898 249 152 0 42 chr1 172158280 172158328 -25037104 - PB1D9 SINE Alu -61 59 14 2 1898 22 56 0 0 chr1 172158388 172158424 -25037008 + AT_rich Low_complexity Low_complexity 1 36 0 2 1898 466 255 63 26 chr1 172158458 172158605 -25036827 + Lx8 LINE L1 6535 6674 -1022 2 1898 307 309 11 0 chr1 172158614 172158707 -25036725 + RLTR14 LTR ERV1 3 96 -286 2 1898 791 153 14 7 chr1 172158707 172158852 -25036580 - URR1A DNA MER1_type 0 226 81 2 1898 1085 201 40 12 chr1 172158874 172159121 -25036311 + RLTR14 LTR ERV1 80 333 -49 2 1898 243 0 0 0 chr1 172159121 172159148 -25036284 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1898 1825 76 7 71 chr1 172159148 172159445 -25035987 - ORR1A2 LTR MaLR -49 278 1 2 1898 785 299 83 22 chr1 172160323 172160686 -25034746 - MER89 LTR ERV1 -8 551 167 3 1898 739 82 8 56 chr1 172162161 172162302 -25033130 - MT2C_Mm LTR ERVL -67 426 280 3 1898 358 176 0 14 chr1 172162286 172162355 -25033077 + RLTR14 LTR ERV1 315 382 0 2 1898 590 310 43 24 chr1 172162358 172162597 -25032835 + Lx8 LINE L1 6655 6897 -563 2 1898 21 36 0 0 chr1 172163426 172163454 -25031978 + GC_rich Low_complexity Low_complexity 1 28 0 3 1898 906 275 43 13 chr1 172163654 172163953 -25031479 - MER31A LTR ERV1 -21 464 157 3 1898 369 274 32 0 chr1 172163966 172164061 -25031371 - MER31A LTR ERV1 -387 98 1 3 1898 228 325 65 0 chr1 172164296 172164373 -25031059 + ORR1E LTR MaLR 53 134 -225 3 1898 1271 34 0 0 chr1 172164790 172164937 -25030495 - B1_Mus2 SINE Alu 0 147 1 3 1898 222 244 0 43 chr1 172165384 172165431 -25030001 + PB1D7 SINE Alu 68 112 -8 3 1898 648 0 0 0 chr1 172165440 172165512 -25029920 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 3 1898 266 277 15 0 chr1 172165982 172166047 -25029385 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 3 1898 563 248 26 65 chr1 172166092 172166247 -25029185 + B1F SINE Alu 1 149 0 3 1898 213 65 0 0 chr1 172166486 172166517 -25028915 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1898 1189 248 10 31 chr1 172166561 172166852 -25028580 - B4A SINE B4 -6 286 2 3 1898 264 241 54 64 chr1 172167659 172167833 -25027599 - L1MEc LINE L1 -6306 319 6 3 1898 744 143 0 0 chr1 172167993 172168119 -25027313 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 3 1898 457 70 0 0 chr1 172168119 172168176 -25027256 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1898 770 226 7 0 chr1 172168176 172168313 -25027119 - B1_Mur1 SINE Alu -9 140 3 3 1898 545 148 0 18 chr1 172168452 172168525 -25026907 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1898 603 40 0 0 chr1 172168525 172168599 -25026833 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1898 7591 58 9 0 chr1 172168599 172169482 -25025950 - RLTR13B1 LTR ERVK -2 891 1 3 1898 545 148 0 18 chr1 172169482 172169517 -25025915 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1898 234 91 0 0 chr1 172169695 172169728 -25025704 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 3 1898 366 23 0 0 chr1 172169819 172169862 -25025570 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1898 397 314 107 38 chr1 172169936 172170095 -25025337 - ID_B1 SINE B4 -40 184 15 3 1898 235 348 11 0 chr1 172171122 172171214 -25024218 - L2 LINE L2 -982 2437 2345 3 1898 201 365 41 10 chr1 172171404 172171501 -25023931 - L2c LINE L2 -62 3325 3226 3 1898 1172 262 56 78 chr1 172171712 172172085 -25023347 + MTE2a LTR MaLR 1 365 -14 3 1898 180 0 0 0 chr1 172172282 172172302 -25023130 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1898 233 254 0 35 chr1 172172553 172172610 -25022822 + polypyrimidine Low_complexity Low_complexity 6 60 0 3 1898 651 219 0 9 chr1 172172610 172172725 -25022707 - B1_Mur4 SINE Alu -15 135 22 3 1898 296 261 0 140 chr1 172172630 172172737 -25022695 - MT2B LTR ERVL -337 264 173 3 1898 342 0 0 0 chr1 172172756 172172794 -25022638 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1898 264 256 25 25 chr1 172172979 172173059 -25022373 + CT-rich Low_complexity Low_complexity 4 83 0 3 1898 351 281 7 105 chr1 172173175 172173318 -25022114 - B4A SINE B4 0 292 164 3 1898 318 179 73 15 chr1 172173558 172173626 -25021806 - RLTR28B LTR ERVL -298 183 112 3 1898 276 322 32 45 chr1 172173705 172173861 -25021571 - B4A SINE B4 -138 154 1 3 1898 831 209 99 0 chr1 172173991 172174173 -25021259 - B3 SINE B2 -16 200 1 3 1898 351 0 0 0 chr1 172174222 172174261 -25021171 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1898 1167 73 0 0 chr1 172174261 172174398 -25021034 - B1_Mus1 SINE Alu -10 138 2 3 1898 231 353 140 13 chr1 172174460 172174695 -25020737 - L1M5 LINE L1 -619 5621 5357 3 1898 579 29 0 0 chr1 172175187 172175256 -25020176 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1898 264 259 23 125 chr1 172175882 172176010 -25019422 + MT2B LTR ERVL 150 264 -337 3 1898 715 182 15 0 chr1 172175907 172176044 -25019388 + B1_Mus1 SINE Alu 10 148 0 3 1898 300 120 0 0 chr1 172176049 172176099 -25019333 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1898 361 264 138 16 chr1 172176119 172176242 -25019190 + B1_Mur1 SINE Alu 1 138 -11 3 1898 266 311 47 0 chr1 172176428 172176534 -25018898 - Tigger5 DNA MER2_type -2 2404 2294 3 1898 234 0 0 0 chr1 172176765 172176791 -25018641 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1898 734 191 104 6 chr1 172177274 172177437 -25017995 - MTD LTR MaLR -35 384 206 3 1898 1618 186 309 11 chr1 172178619 172179069 -25016363 - RLTR25A LTR ERVK 0 1103 520 3 1898 453 116 0 0 chr1 172179114 172179183 -25016249 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1898 405 231 171 9 chr1 172179188 172179293 -25016139 - RLTR25A LTR ERVK -906 122 1 3 1898 733 164 0 105 chr1 172179293 172179433 -25015999 + B1_Mus2 SINE Alu 10 134 -13 3 1898 316 0 22 22 chr1 172179435 172179480 -25015952 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1898 235 273 13 0 chr1 172179901 172179978 -25015454 - Lx9 LINE L1 -36 7608 7531 3 1898 195 42 0 0 chr1 172180003 172180027 -25015405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1898 1075 309 32 11 chr1 172181161 172181442 -25013990 + B4 SINE B4 2 288 -4 3 1898 214 299 94 94 chr1 172182028 172182220 -25013212 + MIRc SINE MIR 1 192 -76 3 1898 288 289 155 24 chr1 172182444 172182650 -25012782 - RLTR15 LTR ERVK -125 234 2 3 1898 486 280 17 17 chr1 172182937 172183057 -25012375 - PB1D7 SINE Alu 0 120 1 3 1898 336 256 0 37 chr1 172183629 172183710 -25011722 + ID4_ SINE ID 6 83 0 3 1898 312 269 0 37 chr1 172184085 172184166 -25011266 + ID4_ SINE ID 6 83 0 3 1898 249 96 139 77 chr1 172184432 172184520 -25010912 + B1_Mus1 SINE Alu 2 105 -44 3 1898 1646 141 62 109 chr1 172184972 172185394 -25010038 - RMER17C LTR ERVK -8 402 1 3 1898 271 217 16 62 chr1 172186015 172186079 -25009353 + ID4_ SINE ID 2 62 -21 3 1898 231 152 0 0 chr1 172186102 172186148 -25009284 + T-rich Low_complexity Low_complexity 1 46 0 3 1898 1202 56 28 0 chr1 172186152 172186294 -25009138 - B1_Mm SINE Alu -1 146 1 3 1898 40711 26 2 7 chr1 172186301 172192497 -25002935 - L1Md_T LINE L1 0 6582 422 3 1898 383 293 107 22 chr1 172192526 172192704 -25002728 - B3A SINE B2 -2 196 4 3 1898 24 0 0 0 chr1 172192712 172192736 -25002696 + AT_rich Low_complexity Low_complexity 1 24 0 3 1898 208 106 85 0 chr1 172193007 172193054 -25002378 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 3 1898 206 386 58 43 chr1 172194950 172195088 -25000344 - MIR SINE MIR -115 147 8 3 1898 215 61 30 0 chr1 172195229 172195262 -25000170 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1898 1159 170 4 118 chr1 172195611 172195865 -24999567 - RLTR12A LTR ERVK -343 225 1 3 1898 703 242 42 16 chr1 172195865 172196025 -24999407 - MTC LTR MaLR -253 168 4 3 1898 1270 206 180 6 chr1 172196071 172196179 -24999253 + ORR1C1 LTR MaLR 1 161 -217 3 1898 1426 86 32 5 chr1 172196179 172196367 -24999065 + B2_Mm2 SINE B2 2 194 -1 3 1898 1270 206 180 6 chr1 172196367 172196580 -24998852 + ORR1C1 LTR MaLR 162 377 -1 3 1898 1504 128 47 27 chr1 172196580 172196654 -24998778 + ORR1C1-int LTR MaLR 1 69 -1440 3 1898 7992 103 32 32 chr1 172196654 172197768 -24997664 + RLTR13D3 LTR ERVK 1 1114 0 3 1898 1504 128 47 27 chr1 172197768 172197950 -24997482 + ORR1C1-int LTR MaLR 70 262 -1247 3 1898 366 230 98 53 chr1 172198803 172198936 -24996496 - RLTR15 LTR ERVK -220 139 1 3 1898 830 126 134 0 chr1 172199476 172199603 -24995829 + B1_Mus1 SINE Alu 5 148 0 3 1898 216 0 0 0 chr1 172199631 172199655 -24995777 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1898 1086 104 0 0 chr1 172199726 172199861 -24995571 + B1_Mus1 SINE Alu 2 136 -12 3 1898 549 0 0 0 chr1 172199862 172199923 -24995509 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3 1898 1458 95 11 5 chr1 172199969 172200159 -24995273 + B2_Mm2 SINE B2 1 191 -4 3 1898 573 52 0 0 chr1 172201465 172201542 -24993890 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1898 306 262 36 0 chr1 172201759 172201843 -24993589 + MLT1C LTR MaLR 381 467 0 3 1898 915 133 216 0 chr1 172202694 172202875 -24992557 + URR1A DNA MER1_type 7 226 0 3 1898 490 316 31 62 chr1 172203290 172203516 -24991916 + ID_B1 SINE B4 4 222 -2 3 1898 261 289 92 0 chr1 172203615 172203691 -24991741 - 5S rRNA rRNA -30 91 9 3 1898 2095 258 20 25 chr1 172203952 172204553 -24990879 + Lx8 LINE L1 4747 5383 -857 3 1898 1238 241 48 0 chr1 172204564 172204859 -24990573 + Lx8 LINE L1 5529 5837 -43 3 1898 718 219 20 46 chr1 172204859 172205012 -24990420 - B1_Mur4 SINE Alu 0 150 2 3 1898 2066 271 78 51 chr1 172205014 172205835 -24989597 + Lx8 LINE L1 5825 6667 -806 3 1898 362 316 0 0 chr1 172205865 172205959 -24989473 + RLTR14 LTR ERV1 3 96 -286 3 1898 852 167 7 0 chr1 172205959 172206103 -24989329 - URR1A DNA MER1_type 0 226 82 3 1898 1366 183 19 69 chr1 172206125 172206365 -24989067 + RLTR14 LTR ERV1 80 322 -60 3 1898 195 42 0 0 chr1 172206365 172206389 -24989043 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 3 1898 1035 106 5 27 chr1 172206390 172206574 -24988858 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 1898 702 0 0 0 chr1 172206574 172206652 -24988780 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 3 1898 1366 183 19 69 chr1 172206652 172206663 -24988769 + RLTR14 LTR ERV1 323 324 -58 3 1898 1247 61 0 0 chr1 172206663 172206810 -24988622 - B1_Mus1 SINE Alu 0 148 2 3 1898 1366 183 19 69 chr1 172206810 172206871 -24988561 + RLTR14 LTR ERV1 325 379 -3 3 1898 765 272 10 25 chr1 172206902 172207123 -24988309 + Lx8 LINE L1 6681 6897 -563 3 1898 22 0 0 0 chr1 172207934 172207956 -24987476 + GC_rich Low_complexity Low_complexity 1 22 0 3 1898 396 254 13 118 chr1 172208159 172208311 -24987121 - MER31A LTR ERV1 -21 464 329 3 1898 249 276 89 30 chr1 172208322 172208423 -24987009 - RMER10B LTR ERVL -96 302 196 3 1898 860 198 85 78 chr1 172208406 172208738 -24986694 - RMER10B LTR ERVL -98 344 1 3 1898 3389 62 2 2 chr1 172208932 172209338 -24986094 - L1_Mus1 LINE L1 0 6567 6162 3 1898 471 100 0 0 chr1 172209428 172209498 -24985934 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1898 291 311 134 26 chr1 172210149 172210187 -24985245 + ID_B1 SINE B4 40 161 -131 3 1898 606 152 161 0 chr1 172210187 172210305 -24985127 + B1_Mur4 SINE Alu 1 137 -13 3 1898 291 311 134 26 chr1 172210305 172210326 -24985106 + ID_B1 SINE B4 162 236 -56 3 1898 827 159 26 58 chr1 172211140 172211294 -24984138 - B1_Mur4 SINE Alu 0 150 2 4 1898 237 196 0 0 chr1 172211329 172211385 -24984047 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1898 337 236 0 0 chr1 172211385 172211474 -24983958 - Lx9 LINE L1 -128 7516 7428 4 1898 1034 243 14 5 chr1 172211459 172211678 -24983754 + Lx9 LINE L1 7188 7408 -236 4 1898 642 314 0 54 chr1 172211678 172211846 -24983586 + ID_B1 SINE B4 51 209 -15 4 1898 227 206 31 31 chr1 172211846 172211911 -24983521 + L1MC4 LINE L1 7977 8041 -1 4 1898 234 0 0 0 chr1 172212259 172212285 -24983147 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1898 1788 187 58 0 chr1 172212900 172213243 -24982189 - Lx5 LINE L1 -3 7047 6685 4 1898 1040 313 32 11 chr1 172214254 172214535 -24980897 + B4 SINE B4 2 288 -4 4 1898 226 279 99 105 chr1 172215121 172215293 -24980139 + MIRc SINE MIR 1 171 -97 4 1898 565 298 37 57 chr1 172215420 172215769 -24979663 - RLTR15 LTR ERVK -16 343 2 4 1898 23 33 0 0 chr1 172215932 172215962 -24979470 + AT_rich Low_complexity Low_complexity 1 30 0 4 1898 208 133 0 104 chr1 172216030 172216097 -24979335 + T-rich Low_complexity Low_complexity 6 65 0 4 1898 500 257 18 18 chr1 172216097 172216208 -24979224 - PB1D7 SINE Alu 0 120 10 4 1898 303 263 72 216 chr1 172216777 172216899 -24978533 + ID_B1 SINE B4 3 96 -128 4 1898 264 307 146 11 chr1 172216899 172216988 -24978444 + PB1D10 SINE Alu 4 104 -13 4 1898 362 245 112 77 chr1 172217020 172217343 -24978089 - RMER10A LTR ERVL -13 429 96 4 1898 427 249 18 9 chr1 172217877 172217986 -24977446 - PB1D7 SINE Alu 0 120 11 4 1898 208 176 31 62 chr1 172218198 172218295 -24977137 + (TATAA)n Simple_repeat Simple_repeat 3 96 0 4 1898 236 331 85 16 chr1 172218298 172218427 -24977005 + L3 LINE CR1 4152 4289 -200 4 1898 215 321 0 0 chr1 172218541 172218594 -24976838 + polypyrimidine Low_complexity Low_complexity 3 55 0 4 1898 229 325 0 38 chr1 172219043 172219174 -24976258 - L1M5 LINE L1 -1014 5132 5007 4 1898 251 233 68 14 chr1 172219204 172219278 -24976154 + L2a LINE L2 3347 3424 -2 4 1898 398 326 149 49 chr1 172219838 172220084 -24975348 - L1M5 LINE L1 -1827 4319 4060 4 1898 1720 187 93 6 chr1 172220084 172220428 -24975004 + ORR1D1 LTR MaLR 1 374 0 4 1898 398 326 149 49 chr1 172220428 172220730 -24974702 - L1M5 LINE L1 -2087 4059 3716 4 1898 414 293 224 24 chr1 172220736 172221021 -24974411 - ORR1D2 LTR MaLR 0 370 28 4 1898 907 238 67 5 chr1 172221021 172221215 -24974217 + B3 SINE B2 1 206 -10 4 1898 268 146 0 0 chr1 172221651 172221707 -24973725 - PB1D10 SINE Alu -8 112 56 4 1898 321 256 3 0 chr1 172222520 172222595 -24972837 - B1F SINE Alu -23 126 51 4 1898 300 272 1 28 chr1 172224093 172224174 -24971258 + ORR1D2 LTR MaLR 10 89 -281 4 1898 599 229 3 6 chr1 172224326 172224449 -24970983 + PB1D10 SINE Alu 7 126 -24 4 1898 180 0 0 0 chr1 172225820 172225840 -24969592 + (TGG)n Simple_repeat Simple_repeat 1 20 0 4 1898 714 164 0 0 chr1 172226818 172226928 -24968504 + polypyrimidine Low_complexity Low_complexity 26 135 0 4 1898 1264 61 0 27 chr1 172226928 172227113 -24968319 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1898 714 164 0 0 chr1 172227113 172227136 -24968296 + polypyrimidine Low_complexity Low_complexity 3 25 0 4 1898 1271 142 33 9 chr1 172227438 172227652 -24967780 - URR1B DNA MER1_type -6 219 1 4 1899 440 243 103 0 chr1 172232322 172232429 -24963003 + B1F SINE Alu 1 118 -31 4 1899 600 14 0 0 chr1 172232984 172233053 -24962379 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1899 450 75 0 0 chr1 172233166 172233233 -24962199 + (TTTTG)n Simple_repeat Simple_repeat 5 71 0 4 1899 261 281 69 50 chr1 172233772 172233873 -24961559 - MIR SINE MIR -86 122 20 4 1899 227 259 40 158 chr1 172233973 172234074 -24961358 + L2c LINE L2 3294 3382 -5 4 1899 2286 154 78 15 chr1 172234181 172234577 -24960855 + MTC LTR MaLR 1 421 0 4 1899 1350 80 17 0 chr1 172235806 172235981 -24959451 - B2_Mm2 SINE B2 -16 179 2 4 1899 197 272 131 66 chr1 172236826 172236948 -24958484 - MIRm SINE MIR -138 138 9 4 1899 226 262 96 124 chr1 172237438 172237538 -24957894 + L1MC4 LINE L1 7820 7910 -132 4 1899 350 239 0 0 chr1 172237538 172237605 -24957827 + ID4_ SINE ID 3 69 -14 4 1899 414 0 0 0 chr1 172237608 172237654 -24957778 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1899 226 262 96 124 chr1 172237654 172237767 -24957665 + L1MC4 LINE L1 7911 8029 -13 4 1899 191 62 0 59 chr1 172237774 172237808 -24957624 + (TATATG)n Simple_repeat Simple_repeat 6 37 0 4 1899 616 341 101 12 chr1 172238020 172238436 -24956996 - L1M2 LINE L1 -903 5240 4788 4 1899 351 0 0 0 chr1 172238523 172238562 -24956870 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1899 2626 130 90 92 chr1 172239261 172239847 -24955585 - RMER4B LTR ERVK 0 585 1 4 1899 1108 150 35 70 chr1 172239946 172240175 -24955257 - URR1B DNA MER1_type 0 225 5 4 1899 380 197 14 0 chr1 172240337 172240408 -24955024 - ID4 SINE ID -10 73 2 4 1899 232 276 108 82 chr1 172240605 172240763 -24954669 + RMER12 LTR ERVK 77 238 -1084 4 1899 186 338 0 14 chr1 172242499 172242571 -24952861 + MER5A DNA MER1_type 93 163 -26 4 1899 378 0 0 0 chr1 172243129 172243171 -24952261 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1899 285 278 186 0 chr1 172244390 172244487 -24950945 - MER20 DNA MER1_type -32 187 73 4 1899 702 189 0 0 chr1 172244495 172244619 -24950813 + CT-rich Low_complexity Low_complexity 21 144 0 4 1899 1224 101 0 0 chr1 172244619 172244797 -24950635 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 1899 702 189 0 0 chr1 172244797 172244815 -24950617 + polypyrimidine Low_complexity Low_complexity 3 20 0 4 1899 213 39 0 0 chr1 172244825 172244851 -24950581 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1899 677 143 134 0 chr1 172245360 172245479 -24949953 - B1_Mur4 SINE Alu -13 137 3 4 1899 432 121 14 47 chr1 172246889 172247037 -24948395 + (CA)n Simple_repeat Simple_repeat 1 143 0 4 1899 203 88 29 0 chr1 172247589 172247623 -24947809 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 4 1899 375 295 132 33 chr1 172249475 172249657 -24945775 + MIRc SINE MIR 7 206 -56 4 1899 1446 75 5 0 chr1 172249670 172249856 -24945576 + B2_Mm1a SINE B2 2 188 -5 4 1899 642 248 0 14 chr1 172251114 172251257 -24944175 - B1F2 SINE Alu -8 141 1 4 1899 496 228 129 8 chr1 172251289 172251413 -24944019 + B1F2 SINE Alu 2 140 -9 4 1899 228 170 21 0 chr1 172253008 172253055 -24942377 + MIR3 SINE MIR 111 158 -50 4 1899 405 0 0 0 chr1 172253982 172254027 -24941405 + (CTCA)n Simple_repeat Simple_repeat 2 46 0 4 1899 240 35 0 0 chr1 172258887 172258916 -24936516 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1899 566 257 0 7 chr1 172259800 172259937 -24935495 - B1F SINE Alu 0 149 14 4 1899 427 290 238 9 chr1 172260212 172260435 -24934997 - RMER21B LTR ERV1 -275 567 294 4 1899 289 271 84 14 chr1 172261113 172261184 -24934248 - PB1D10 SINE Alu -37 80 5 4 1899 441 0 0 0 chr1 172261377 172261426 -24934006 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1899 695 297 111 38 chr1 172262440 172262755 -24932677 + MLT2D LTR ERVL 33 370 -44 4 1899 1503 224 80 45 chr1 172263243 172263439 -24931993 - MTD LTR MaLR -5 414 209 4 1899 932 163 14 0 chr1 172263439 172263586 -24931846 - B1_Mur4 SINE Alu 0 150 2 4 1899 1503 224 80 45 chr1 172263586 172263787 -24931645 - MTD LTR MaLR -211 208 3 4 1899 814 167 27 27 chr1 172263927 172264075 -24931357 + B1_Mur2 SINE Alu 2 149 0 4 1899 615 266 104 39 chr1 172265380 172265611 -24929821 + B4A SINE B4 1 246 -46 4 1899 540 81 0 0 chr1 172265615 172265689 -24929743 + (GGA)n Simple_repeat Simple_repeat 2 75 0 4 1899 205 258 0 46 chr1 172265723 172265788 -24929644 + (CATA)n Simple_repeat Simple_repeat 1 62 0 4 1899 213 303 128 29 chr1 172266156 172266258 -24929174 - MIRm SINE MIR -122 154 43 4 1899 240 111 0 0 chr1 172266684 172266729 -24928703 + (CAGG)n Simple_repeat Simple_repeat 3 47 0 4 1899 568 186 49 0 chr1 172266775 172266877 -24928555 + B1_Mur2 SINE Alu 43 149 0 4 1899 277 341 101 46 chr1 172267265 172267483 -24927949 - MIRb SINE MIR 0 268 39 4 1899 276 212 60 15 chr1 172267537 172267604 -24927828 - PB1D10 SINE Alu 0 117 48 4 1899 322 251 74 72 chr1 172267989 172268097 -24927335 + PB1D10 SINE Alu 13 116 -1 4 1899 356 288 68 0 chr1 172268926 172269044 -24926388 + L1M2 LINE L1 4868 4993 -1150 4 1899 313 252 107 16 chr1 172269063 172269184 -24926248 + L1M2 LINE L1 4958 5089 -1051 4 1899 212 143 24 0 chr1 172269913 172269955 -24925477 + (CTA)n Simple_repeat Simple_repeat 2 44 0 4 1899 1309 269 67 13 chr1 172270010 172270383 -24925049 - Lx8 LINE L1 -9 7464 7072 4 1899 2303 93 15 12 chr1 172270551 172270877 -24924555 + ORR1A2 LTR MaLR 1 327 0 4 1899 389 311 0 0 chr1 172271971 172272074 -24923358 + PB1D10 SINE Alu 4 106 -11 4 1899 569 239 18 9 chr1 172272084 172272194 -24923238 + RSINE1 SINE B4 50 160 -5 4 1899 252 0 0 0 chr1 172272199 172272227 -24923205 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1899 741 309 33 63 chr1 172274583 172274632 -24920800 + B4 SINE B4 1 49 -243 4 1899 333 47 0 0 chr1 172274632 172274675 -24920757 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1899 741 309 33 63 chr1 172274675 172274926 -24920506 + B4 SINE B4 50 292 0 4 1899 188 211 0 26 chr1 172275871 172275910 -24919522 - MIR SINE MIR -63 145 108 4 1899 242 282 68 112 chr1 172275901 172276065 -24919367 + MIR SINE MIR 18 179 -97 4 1899 368 182 0 11 chr1 172276204 172276293 -24919139 + CT-rich Low_complexity Low_complexity 1 88 0 4 1899 1304 89 28 0 chr1 172277694 172277873 -24917559 + B2_Mm1a SINE B2 2 185 -8 4 1899 189 74 0 0 chr1 172277874 172277901 -24917531 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 4 1899 281 344 72 18 chr1 172278003 172278169 -24917263 + Tigger5 DNA MER2_type 13 187 -2219 5 1899 397 310 0 8 chr1 172278185 172278302 -24917130 + Tigger5 DNA MER2_type 2291 2406 0 5 1899 327 226 21 11 chr1 172278562 172278656 -24916776 + MER103 DNA DNA 2 96 -70 5 1899 195 321 97 66 chr1 172280847 172281074 -24914358 + L2 LINE L2 2659 2892 -527 5 1899 245 361 7 34 chr1 172282528 172282677 -24912755 - L3 LINE CR1 -83 4406 4262 5 1899 323 312 11 0 chr1 172283147 172283240 -24912192 + MIRc SINE MIR 18 111 -157 5 1899 287 188 35 0 chr1 172283954 172284039 -24911393 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1899 878 238 215 12 chr1 172284528 172284868 -24910564 + MLT2B4 LTR ERVL 81 489 -67 5 1899 211 259 35 0 chr1 172287707 172287765 -24907667 + CT-rich Low_complexity Low_complexity 4 63 0 5 1899 231 322 32 32 chr1 172289018 172289143 -24906289 - LTR33 LTR ERVL -390 125 1 5 1899 777 98 0 0 chr1 172289889 172290001 -24905431 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 5 1899 352 216 0 19 chr1 172290020 172290124 -24905308 + GA-rich Low_complexity Low_complexity 5 106 0 5 1899 275 157 14 0 chr1 172290232 172290302 -24905130 + GA-rich Low_complexity Low_complexity 2 72 0 5 1899 194 154 26 0 chr1 172291840 172291879 -24903553 - L2a LINE L2 -8 3418 3379 5 1899 411 295 62 35 chr1 172292020 172292164 -24903268 - RSINE1 SINE B4 -15 150 3 5 1899 427 219 9 37 chr1 172292264 172292373 -24903059 + B1F SINE Alu 6 111 -38 5 1899 313 264 86 55 chr1 172292373 172292386 -24903046 + ID_B1 SINE B4 115 212 -12 5 1899 1053 113 0 0 chr1 172292396 172292555 -24902877 + (GA)n Simple_repeat Simple_repeat 2 160 0 5 1899 696 56 0 0 chr1 172292572 172292661 -24902771 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 5 1899 243 135 53 26 chr1 172292976 172293052 -24902380 + (CATCC)n Simple_repeat Simple_repeat 2 79 0 5 1899 314 209 0 29 chr1 172293884 172293953 -24901479 + PB1D7 SINE Alu 17 83 -37 5 1899 1215 195 251 16 chr1 172294431 172294734 -24900698 + ORR1D1 LTR MaLR 1 374 0 5 1899 565 273 107 24 chr1 172294920 172295089 -24900343 - B3 SINE B2 -8 208 26 5 1899 273 376 11 0 chr1 172295195 172295288 -24900144 - L2a LINE L2 -22 3404 3311 5 1899 1590 258 47 2 chr1 172295902 172296303 -24899129 - MTD LTR MaLR 0 419 1 5 1899 378 323 7 22 chr1 172296303 172296439 -24898993 + RSINE1 SINE B4 32 165 0 5 1899 2608 99 25 35 chr1 172298396 172298794 -24896638 + ORR1B1 LTR MaLR 1 394 0 5 1899 730 270 69 85 chr1 172299479 172299843 -24895589 - MTE2a LTR MaLR 0 379 22 5 1899 1043 235 0 0 chr1 172299844 172300061 -24895371 + MTD LTR MaLR 18 234 -185 5 1899 461 205 0 0 chr1 172300061 172300144 -24895288 - Lx8 LINE L1 -1069 6404 6322 5 1899 299 149 11 44 chr1 172300315 172300406 -24895026 + CT-rich Low_complexity Low_complexity 3 90 0 5 1899 207 0 0 0 chr1 172300585 172300608 -24894824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1899 623 131 0 0 chr1 172300609 172300708 -24894724 - B1_Mus2 SINE Alu -12 135 37 5 1899 857 322 26 23 chr1 172300704 172300968 -24894464 + MTE2b LTR MaLR 37 301 -78 5 1899 216 143 41 0 chr1 172301429 172301478 -24893954 + (CAA)n Simple_repeat Simple_repeat 2 52 0 5 1899 854 335 88 32 chr1 172301609 172302164 -24893268 + LTR33C LTR ERVL 6 591 -38 5 1899 243 246 35 0 chr1 172302553 172302610 -24892822 + L1M4 LINE L1 4880 4938 -1208 5 1899 287 273 78 0 chr1 172302837 172302914 -24892518 + PB1D10 SINE Alu 6 88 -29 5 1899 543 75 12 0 chr1 172303009 172303089 -24892343 - B1_Mur3 SINE Alu 0 149 69 5 1899 374 310 53 8 chr1 172303134 172303332 -24892100 + L1MA10 LINE L1 5971 6331 -3 5 1899 829 201 0 13 chr1 172303409 172303560 -24891872 + B1_Mur2 SINE Alu 1 149 0 5 1899 600 244 131 0 chr1 172303685 172303853 -24891579 + B3A SINE B2 1 190 -8 5 1899 288 308 58 0 chr1 172304052 172304156 -24891276 - L2a LINE L2 -17 3409 3300 5 1899 802 267 100 53 chr1 172304574 172304894 -24890538 - MLT1A0 LTR MaLR -21 344 10 5 1899 1272 67 0 0 chr1 172306382 172306562 -24888870 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1899 990 109 0 0 chr1 172306577 172306789 -24888643 + (CA)n Simple_repeat Simple_repeat 1 212 0 5 1899 834 239 202 27 chr1 172306814 172307111 -24888321 - Lx8 LINE L1 -3 7470 7122 5 1899 297 0 0 0 chr1 172307289 172307330 -24888102 - L1Md_T LINE L1 0 6582 6542 5 1899 194 128 26 0 chr1 172307894 172307933 -24887499 - MIRm SINE MIR -2 274 235 5 1899 523 244 67 103 chr1 172307935 172308050 -24887382 - L1MDa LINE L1 -5173 1367 1237 5 1899 320 339 8 8 chr1 172308050 172308175 -24887257 + PB1 SINE Alu 1 125 -2 5 1899 523 235 68 101 chr1 172308175 172308328 -24887104 - L1MDa LINE L1 -5397 1236 1098 5 1899 293 325 155 5 chr1 172308454 172308661 -24886771 - L1MDa LINE L1 -5503 1130 893 5 1899 4936 113 73 7 chr1 172308855 172309563 -24885869 - Lx LINE L1 -28 6626 5876 5 1899 261 83 0 0 chr1 172309563 172309599 -24885833 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1899 4936 113 73 7 chr1 172309599 172309646 -24885786 - Lx LINE L1 -779 5875 5822 5 1899 496 274 149 34 chr1 172309661 172309956 -24885476 - L1MDa LINE L1 -6153 480 152 5 1899 309 89 0 0 chr1 172311279 172311324 -24884108 + (TCC)n Simple_repeat Simple_repeat 3 47 0 5 1899 241 111 0 0 chr1 172312078 172312123 -24883309 - B3 SINE B2 -4 212 168 5 1899 473 141 12 0 chr1 172312134 172312219 -24883213 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1899 905 233 42 0 chr1 172312219 172312412 -24883020 - B3 SINE B2 -13 203 3 5 1899 841 297 9 0 chr1 172312433 172312655 -24882777 - ID_B1 SINE B4 0 224 1 5 1899 22 0 0 0 chr1 172313316 172313338 -24882094 + AT_rich Low_complexity Low_complexity 1 22 0 5 1899 333 221 0 56 chr1 172313929 172314001 -24881431 + ID4_ SINE ID 3 70 -13 5 1899 268 303 30 0 chr1 172314326 172314392 -24881040 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 5 1899 230 261 22 0 chr1 172314483 172314529 -24880903 + RSINE1 SINE B4 2 48 -117 5 1899 344 59 20 0 chr1 172314646 172314697 -24880735 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 5 1899 384 22 0 0 chr1 172314711 172314756 -24880676 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1899 398 344 32 8 chr1 172314793 172314919 -24880513 + B4A SINE B4 3 131 -161 5 1899 416 300 33 0 chr1 172315051 172315171 -24880261 + B4A SINE B4 166 289 -3 5 1899 284 70 23 0 chr1 172315178 172315221 -24880211 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1899 432 0 0 0 chr1 172315953 172316001 -24879431 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1899 423 0 0 0 chr1 172316001 172316047 -24879385 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1899 407 181 12 0 chr1 172316093 172316176 -24879256 - B4 SINE B4 -76 216 133 5 1899 570 278 154 24 chr1 172316244 172316491 -24878941 - B4A SINE B4 -4 288 10 5 1899 280 279 65 37 chr1 172317125 172317233 -24878199 - MIRc SINE MIR -152 116 6 5 1899 405 0 0 0 chr1 172317487 172317532 -24877900 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1899 267 350 10 0 chr1 172318052 172318155 -24877277 + MamRep605 Unknown Unknown 71 174 -702 5 1899 2395 97 25 0 chr1 172318265 172318584 -24876848 + ORR1A2 LTR MaLR 1 327 0 5 1899 318 284 77 36 chr1 172318696 172318864 -24876568 + MamRep605 Unknown Unknown 501 675 -201 5 1899 396 310 35 7 chr1 172319074 172319217 -24876215 - Lx8 LINE L1 -352 7121 6975 5 1899 315 313 12 0 chr1 172320110 172320193 -24875239 + PB1D10 SINE Alu 21 104 -13 5 1899 1260 21 16 26 chr1 172320194 172320623 -24874809 + (CA)n Simple_repeat Simple_repeat 1 424 0 5 1899 240 292 202 12 chr1 172321229 172321392 -24874040 - L3b LINE CR1 -92 390 197 5 1899 663 222 0 7 chr1 172321866 172322002 -24873430 + B1F SINE Alu 15 149 0 5 1899 416 269 9 0 chr1 172322395 172322503 -24872929 + ID_B1 SINE B4 87 195 -29 5 1899 411 273 0 35 chr1 172322505 172322619 -24872813 + RSINE1 SINE B4 27 136 -29 5 1899 825 278 48 86 chr1 172323678 172323969 -24871463 - B4 SINE B4 -7 285 6 5 1899 731 194 0 14 chr1 172324211 172324352 -24871080 + B1_Mur1 SINE Alu 10 148 -1 5 1899 217 185 30 30 chr1 172324352 172324419 -24871013 + A-rich Low_complexity Low_complexity 1 67 0 5 1899 615 218 46 26 chr1 172324424 172324575 -24870857 + RSINE1 SINE B4 2 155 -10 5 1899 707 109 8 70 chr1 172326397 172326525 -24868907 - B1_Mur4 SINE Alu -13 137 18 5 1899 798 238 15 54 chr1 172326531 172326735 -24868697 - B4A SINE B4 -92 200 5 5 1899 277 192 0 0 chr1 172326947 172326999 -24868433 + L1MB2 LINE L1 5687 5738 -445 5 1899 1188 118 6 17 chr1 172326999 172327180 -24868252 + B2_Mm1t SINE B2 1 179 -14 5 1899 272 151 333 27 chr1 172327228 172327336 -24868096 + B2_Mm2 SINE B2 47 187 -8 5 1899 376 236 73 72 chr1 172327338 172327613 -24867819 + L1MB2 LINE L1 5731 6045 -138 5 1899 265 328 0 0 chr1 172327650 172327717 -24867715 - PB1D10 SINE Alu -27 90 24 5 1899 340 259 76 25 chr1 172327728 172327847 -24867585 + L1MB2 LINE L1 6058 6182 -1 5 1899 315 231 13 13 chr1 172327855 172327934 -24867498 + 7SK RNA RNA 7 85 -246 5 1899 2222 123 6 0 chr1 172328129 172328454 -24866978 + ORR1A2 LTR MaLR 1 327 0 5 1899 395 233 78 0 chr1 172328919 172329035 -24866397 + B1F1 SINE Alu 23 147 -2 5 1899 418 303 42 0 chr1 172330332 172330474 -24864958 + B1F SINE Alu 2 149 0 5 1899 292 281 10 50 chr1 172330481 172330582 -24864850 + PB1D7 SINE Alu 1 97 -23 5 1899 276 247 0 27 chr1 172331101 172331176 -24864256 + MTE2b LTR MaLR 294 366 -13 5 1899 934 247 40 33 chr1 172332523 172332799 -24862633 - MER2 DNA MER2_type 0 345 68 5 1899 333 383 46 23 chr1 172335486 172335705 -24859727 - MER58A DNA MER1_type 0 224 1 5 1899 437 244 0 0 chr1 172335705 172335786 -24859646 + PB1D10 SINE Alu 28 108 -9 5 1899 22 35 0 0 chr1 172335786 172335815 -24859617 + AT_rich Low_complexity Low_complexity 1 29 0 5 1899 321 293 40 60 chr1 172335892 172336041 -24859391 + L1ME1 LINE L1 5811 5956 -223 5 1899 837 255 10 0 chr1 172336055 172336247 -24859185 + B3 SINE B2 1 194 -22 6 1899 1198 115 0 5 chr1 172336255 172336439 -24858993 + B2_Mm2 SINE B2 6 188 -7 6 1899 26 30 0 0 chr1 172336459 172336492 -24858940 + AT_rich Low_complexity Low_complexity 1 33 0 6 1899 280 313 58 28 chr1 172336510 172336698 -24858734 + L1ME1 LINE L1 5952 6151 -28 5 1899 262 224 62 62 chr1 172337830 172337911 -24857521 + B1F2 SINE Alu 1 81 -68 6 1899 28 0 0 0 chr1 172339127 172339155 -24856277 + AT_rich Low_complexity Low_complexity 1 28 0 6 1899 252 0 0 0 chr1 172340656 172340684 -24854748 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1899 482 109 0 11 chr1 172340751 172340844 -24854588 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 1899 267 309 113 0 chr1 172342248 172342345 -24853087 + PB1D10 SINE Alu 10 117 0 6 1899 324 254 38 45 chr1 172342346 172342478 -24852954 - L2 LINE L2 -955 2464 2334 6 1899 267 274 145 22 chr1 172342633 172342771 -24852661 + MLT1A0 LTR MaLR 1 155 -253 6 1899 437 284 12 7 chr1 172342793 172342938 -24852494 + MLT1A0 LTR MaLR 248 395 -13 6 1899 234 156 0 0 chr1 172343621 172343666 -24851766 + A-rich Low_complexity Low_complexity 1 45 0 6 1899 369 0 0 0 chr1 172344048 172344089 -24851343 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1899 833 303 144 17 chr1 172344404 172344757 -24850675 - MLT1D LTR MaLR -7 498 101 6 1899 2208 183 43 96 chr1 172346925 172347530 -24847902 + RMER15 LTR ERVL 1 573 -2 6 1899 24 85 0 0 chr1 172347592 172347651 -24847781 + AT_rich Low_complexity Low_complexity 1 59 0 6 1899 355 182 77 18 chr1 172347693 172347861 -24847571 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 1899 543 233 29 43 chr1 172348919 172349058 -24846374 + B1F1 SINE Alu 1 137 -12 6 1899 442 298 41 28 chr1 172349578 172349723 -24845709 + RSINE1 SINE B4 9 155 -10 6 1899 233 29 29 0 chr1 172349729 172349763 -24845669 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1899 542 234 93 33 chr1 172349918 172350068 -24845364 - B3 SINE B2 0 216 58 6 1899 1137 155 95 24 chr1 172351050 172351261 -24844171 + URR1A DNA MER1_type 1 226 0 6 1899 841 286 12 53 chr1 172351400 172351647 -24843785 + B4A SINE B4 8 244 -48 6 1899 1364 199 52 6 chr1 172351647 172351970 -24843462 + Lx2B LINE L1 6623 7058 0 6 1899 245 328 0 0 chr1 172352062 172352123 -24843309 + G-rich Low_complexity Low_complexity 5 65 0 6 1899 407 209 55 37 chr1 172352142 172352251 -24843181 + PB1D10 SINE Alu 6 116 -1 6 1899 1174 247 50 96 chr1 172352294 172352733 -24842699 - MTD LTR MaLR 0 419 1 6 1899 484 56 28 0 chr1 172353569 172353641 -24841791 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 1899 582 15 0 0 chr1 172353641 172353708 -24841724 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1899 833 313 4 22 chr1 172355950 172356228 -24839204 + B4A SINE B4 2 274 -18 6 1899 609 136 0 0 chr1 172356295 172356398 -24839034 + (CA)n Simple_repeat Simple_repeat 1 103 0 6 1899 452 152 27 81 chr1 172356924 172357110 -24838322 + RMER17C LTR ERVK 99 274 -136 6 1899 336 48 48 16 chr1 172357124 172357187 -24838245 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 6 1899 534 256 91 32 chr1 172357573 172357759 -24837673 - L1M5 LINE L1 -466 5713 5517 6 1899 656 282 99 11 chr1 172358713 172358996 -24836436 - L1MC LINE L1 -2153 5632 5325 6 1899 200 209 0 23 chr1 172359022 172359066 -24836366 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1899 1070 285 7 21 chr1 172359076 172359366 -24836066 - B4 SINE B4 -1 291 6 6 1900 180 111 0 0 chr1 172361249 172361276 -24834156 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1900 505 309 148 60 chr1 172361469 172361903 -24833529 - MLT1G3 LTR MaLR -62 493 22 6 1900 348 24 0 0 chr1 172362075 172362116 -24833316 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 6 1900 2606 155 52 12 chr1 172362140 172362636 -24832796 + RMER20A LTR ERVK 1 516 0 6 1900 355 225 0 40 chr1 172362636 172362710 -24832722 - ID_B1 SINE B4 -27 197 127 6 1900 216 0 0 0 chr1 172362959 172362983 -24832449 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1900 1289 91 11 0 chr1 172363185 172363361 -24832071 + B2_Mm1t SINE B2 2 179 -14 6 1900 314 121 340 9 chr1 172363393 172363499 -24831933 + B2_Mm2 SINE B2 47 187 -8 6 1900 785 316 79 52 chr1 172364158 172364602 -24830830 - Tigger13a DNA MER2_type -1 770 315 6 1900 1262 138 36 18 chr1 172365246 172365467 -24829965 + URR1B DNA MER1_type 1 225 0 6 1900 239 286 65 19 chr1 172366111 172366218 -24829214 + ORR1E LTR MaLR 25 136 -223 6 1900 723 254 20 34 chr1 172367210 172367508 -24827924 + RLTR15 LTR ERVK 10 303 -56 6 1900 352 192 81 0 chr1 172367705 172367779 -24827653 + PB1D10 SINE Alu 21 100 -20 6 1900 531 0 0 0 chr1 172367899 172367958 -24827474 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1900 531 0 0 0 chr1 172367958 172368016 -24827416 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1900 405 0 0 0 chr1 172368016 172368061 -24827371 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 6 1900 216 239 89 22 chr1 172368739 172368829 -24826603 + MIR3 SINE MIR 113 208 0 6 1900 23 0 0 0 chr1 172369548 172369571 -24825861 + AT_rich Low_complexity Low_complexity 1 23 0 6 1900 301 240 61 0 chr1 172370238 172370330 -24825102 + PB1D10 SINE Alu 1 96 -21 6 1900 386 312 62 16 chr1 172370776 172370968 -24824464 + MIR SINE MIR 18 218 -44 6 1900 1144 114 22 0 chr1 172371008 172371192 -24824240 + MT2C_Mm LTR ERVL 288 475 0 6 1900 346 265 73 93 chr1 172372013 172372163 -24823269 - B4 SINE B4 -51 241 95 6 1900 198 0 0 0 chr1 172372247 172372269 -24823163 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1900 302 152 17 0 chr1 172372269 172372328 -24823104 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1900 303 296 112 0 chr1 172372415 172372540 -24822892 + B1F SINE Alu 11 149 0 6 1900 1861 300 145 34 chr1 172372994 172373715 -24821717 + L1MA4 LINE L1 3649 4497 -1646 6 1900 1071 141 136 0 chr1 172373715 172373914 -24821518 + URR1A DNA MER1_type 1 226 0 6 1900 1861 300 145 34 chr1 172373914 172374760 -24820672 + L1MA4 LINE L1 4498 5389 -754 6 1900 276 247 147 49 chr1 172374760 172374862 -24820570 + PB1D10 SINE Alu 6 117 0 6 1900 623 286 98 36 chr1 172374871 172375324 -24820108 + L1MA4 LINE L1 5424 5918 -382 6 1900 562 313 77 61 chr1 172375950 172376460 -24818972 - L1MEg LINE L1 -5268 816 299 6 1900 468 0 0 0 chr1 172376655 172376707 -24818725 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1900 535 214 101 12 chr1 172376814 172376990 -24818442 - B3A SINE B2 -2 193 3 6 1900 773 125 93 29 chr1 172377826 172377966 -24817466 + B1_Mur4 SINE Alu 1 149 -1 6 1900 383 119 0 15 chr1 172378211 172378279 -24817153 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1900 216 0 0 0 chr1 172378444 172378468 -24816964 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 6 1900 205 247 21 0 chr1 172380403 172380500 -24814932 + GA-rich Low_complexity Low_complexity 1 99 0 6 1900 388 326 36 0 chr1 172381597 172381735 -24813697 - ID_B1 SINE B4 -1 223 81 6 1900 621 275 100 26 chr1 172381974 172382243 -24813189 + B4 SINE B4 3 291 -1 6 1900 341 115 0 0 chr1 172382256 172382308 -24813124 + HAL1-3A_ME LINE L1 1977 2028 -830 6 1900 210 171 0 0 chr1 172382854 172382895 -24812537 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 6 1900 522 0 0 0 chr1 172382896 172382954 -24812478 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1900 474 205 23 62 chr1 172383910 172384040 -24811392 + RSINE1 SINE B4 2 126 -39 6 1900 486 0 0 0 chr1 172384061 172384115 -24811317 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1900 624 145 0 0 chr1 172384115 172384246 -24811186 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 6 1900 1973 118 58 88 chr1 172384258 172384656 -24810776 + ORR1B1 LTR MaLR 1 386 -8 6 1900 237 312 115 30 chr1 172384946 172385111 -24810321 - MIRb SINE MIR -35 233 55 6 1900 588 257 156 56 chr1 172386015 172386335 -24809097 + ORR1E LTR MaLR 1 371 -8 6 1900 221 256 37 25 chr1 172387309 172387406 -24808026 - MIR SINE MIR -126 150 53 6 1900 374 238 0 23 chr1 172387503 172387589 -24807843 + PB1D10 SINE Alu 7 90 -27 6 1900 699 12 0 0 chr1 172387599 172387679 -24807753 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1900 348 405 109 8 chr1 172388317 172388573 -24806859 + LTR88c LTR Genie? 19 300 -562 6 1900 237 350 92 25 chr1 172388875 172388995 -24806437 + LTR88b LTR Gypsy? 670 797 -40 6 1900 212 156 0 0 chr1 172389576 172389608 -24805824 + MIRm SINE MIR 207 238 -38 6 1900 384 22 0 0 chr1 172389629 172389674 -24805758 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 6 1900 219 69 0 0 chr1 172389772 172389801 -24805631 + (CAA)n Simple_repeat Simple_repeat 3 31 0 6 1900 233 299 88 61 chr1 172389919 172390033 -24805399 + MIRm SINE MIR 157 273 -3 6 1900 3609 162 98 45 chr1 172391494 172392302 -24803130 - Lx9 LINE L1 0 7644 6794 6 1900 748 230 58 45 chr1 172392361 172392584 -24802848 + MTE2a LTR MaLR 154 379 0 6 1900 198 0 0 0 chr1 172393072 172393094 -24802338 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 6 1900 211 284 24 24 chr1 172393400 172393483 -24801949 + B4 SINE B4 1 83 -209 6 1900 506 186 89 152 chr1 172393493 172393651 -24801781 + B1_Mur3 SINE Alu 1 148 -1 6 1900 251 286 0 41 chr1 172393651 172393724 -24801708 + RSINE1 SINE B4 77 146 -19 6 1900 3285 50 5 2 chr1 172393862 172394261 -24801171 + MTB LTR MaLR 1 400 0 6 1900 265 346 150 0 chr1 172395691 172395824 -24799608 - L3 LINE CR1 -178 4311 4159 6 1900 254 290 0 55 chr1 172396055 172396128 -24799304 + ID_B1 SINE B4 109 177 -47 6 1900 244 326 34 34 chr1 172397139 172397275 -24798157 - MIR SINE MIR -8 260 117 7 1900 599 245 145 0 chr1 172397276 172397435 -24797997 + B3A SINE B2 1 182 -16 7 1900 738 266 80 0 chr1 172397502 172397690 -24797742 - B3 SINE B2 -13 203 1 7 1900 363 374 51 25 chr1 172397719 172397955 -24797477 - L1MDa LINE L1 -6338 295 54 7 1900 651 191 21 21 chr1 172398285 172398429 -24797003 + B1_Mur2 SINE Alu 1 144 -5 7 1900 708 12 0 0 chr1 172398434 172398515 -24796917 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 7 1900 552 68 0 0 chr1 172399244 172399317 -24796115 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1900 232 231 108 0 chr1 172400103 172400168 -24795264 + L2b LINE L2 3304 3375 0 7 1900 549 200 101 22 chr1 172400343 172400481 -24794951 + B1F SINE Alu 1 149 0 7 1900 644 0 13 0 chr1 172400552 172400628 -24794804 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 7 1900 3417 25 10 0 chr1 172400956 172401348 -24794084 + MTA_Mm LTR MaLR 1 396 0 7 1900 554 256 0 0 chr1 172401847 172401964 -24793468 + ID_B1 SINE B4 104 220 -4 7 1900 270 290 14 0 chr1 172401984 172402053 -24793379 + RSINE1 SINE B4 42 111 -54 7 1900 552 65 0 0 chr1 172402065 172402142 -24793290 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1900 354 23 0 0 chr1 172402181 172402224 -24793208 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 7 1900 1041 185 52 21 chr1 172402229 172402422 -24793010 - B3 SINE B2 -15 201 3 7 1900 516 45 0 0 chr1 172402449 172402516 -24792916 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 7 1900 578 218 27 0 chr1 172402607 172402717 -24792715 - PB1D10 SINE Alu -2 115 3 7 1900 242 272 250 0 chr1 172403190 172403282 -24792150 + PB1D10 SINE Alu 3 117 0 7 1900 252 286 0 0 chr1 172403287 172403343 -24792089 + polypurine Low_complexity Low_complexity 4 59 0 7 1900 1037 101 11 17 chr1 172403343 172403524 -24791908 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 1900 455 252 10 29 chr1 172404075 172404177 -24791255 - PB1D10 SINE Alu -1 116 17 7 1900 905 178 199 6 chr1 172404264 172404445 -24790987 - B3 SINE B2 0 216 1 7 1900 24 0 0 0 chr1 172404448 172404472 -24790960 + AT_rich Low_complexity Low_complexity 1 24 0 7 1900 592 326 138 43 chr1 172404580 172405022 -24790410 + L1ME4a LINE L1 5639 6122 -2 7 1900 231 125 0 0 chr1 172405287 172405319 -24790113 + B1F SINE Alu 99 130 -19 7 1900 414 0 0 0 chr1 172405945 172405991 -24789441 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1900 225 0 0 0 chr1 172405991 172406015 -24789417 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1900 657 58 0 0 chr1 172406556 172406642 -24788790 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 1900 194 0 39 0 chr1 172407108 172407134 -24788298 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1900 381 127 0 0 chr1 172407134 172407213 -24788219 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1900 537 16 0 0 chr1 172407641 172407703 -24787729 + (GGA)n Simple_repeat Simple_repeat 2 63 0 7 1900 453 81 0 0 chr1 172409329 172409391 -24786041 + (GGGGA)n Simple_repeat Simple_repeat 4 65 0 7 1900 325 182 182 0 chr1 172409878 172409955 -24785477 - B1F SINE Alu -52 97 7 7 1900 714 204 26 7 chr1 172410835 172410988 -24784444 - B4A SINE B4 -49 243 88 7 1900 603 301 0 0 chr1 172411938 172412071 -24783361 + B1F SINE Alu 4 136 -13 7 1900 233 294 261 31 chr1 172412108 172412238 -24783194 + B4A SINE B4 1 160 -132 7 1900 252 0 0 0 chr1 172412309 172412337 -24783095 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1900 402 21 0 0 chr1 172412337 172412383 -24783049 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1900 288 0 0 0 chr1 172412386 172412418 -24783014 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 7 1900 249 108 0 0 chr1 172412685 172412722 -24782710 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 7 1900 213 94 0 0 chr1 172412732 172412764 -24782668 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 7 1900 763 221 7 7 chr1 172414298 172414448 -24780984 + RSINE1 SINE B4 8 157 -8 7 1900 286 226 54 97 chr1 172414526 172414619 -24780813 + PB1D10 SINE Alu 30 118 -2 7 1900 465 198 0 0 chr1 172414847 172414968 -24780464 + (TG)n Simple_repeat Simple_repeat 2 122 0 7 1900 203 161 0 0 chr1 172415778 172415809 -24779623 + (CAT)n Simple_repeat Simple_repeat 3 33 0 7 1900 471 299 127 6 chr1 172415854 172416012 -24779420 - B4 SINE B4 -8 284 108 7 1900 484 266 44 0 chr1 172416015 172416128 -24779304 + RSINE1 SINE B4 44 161 -4 7 1900 627 281 43 0 chr1 172416166 172416305 -24779127 + ID_B1 SINE B4 80 224 0 7 1900 370 301 211 0 chr1 172416763 172416795 -24778637 + B1F SINE Alu 1 149 0 7 1900 378 193 22 33 chr1 172416795 172416886 -24778546 + ID_B1 SINE B4 135 224 0 7 1900 1116 121 0 0 chr1 172416911 172417084 -24778348 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 7 1900 490 318 12 37 chr1 172418369 172418532 -24776900 + RSINE1 SINE B4 2 160 -5 7 1900 30 0 0 0 chr1 172418569 172418599 -24776833 + AT_rich Low_complexity Low_complexity 1 30 0 7 1900 289 284 77 19 chr1 172418699 172418803 -24776629 - ID_B1 SINE B4 -34 190 81 7 1900 793 301 71 47 chr1 172418835 172418951 -24776481 - MLT1A0 LTR MaLR -19 346 224 7 1900 1992 137 66 17 chr1 172418951 172419301 -24776131 - ORR1B2 LTR MaLR 0 367 1 7 1900 793 301 71 47 chr1 172419301 172419522 -24775910 - MLT1A0 LTR MaLR -142 223 1 7 1900 387 0 0 0 chr1 172419898 172419941 -24775491 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1900 665 319 81 52 chr1 172420682 172421063 -24774369 + MLT1D LTR MaLR 107 498 -7 7 1900 1406 89 15 15 chr1 172421078 172421273 -24774159 - B2_Mm2 SINE B2 0 195 1 7 1900 356 312 18 18 chr1 172421297 172421408 -24774024 - PB1D10 SINE Alu -1 116 6 7 1900 190 291 102 73 chr1 172421723 172421860 -24773572 + MIRb SINE MIR 120 260 -8 7 1900 282 164 0 0 chr1 172421885 172421940 -24773492 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 7 1900 230 344 65 8 chr1 172421972 172422095 -24773337 + MIRc SINE MIR 88 217 -51 7 1900 836 298 8 43 chr1 172423149 172423246 -24772186 - MLT1E LTR MaLR -4 649 558 7 1900 2460 93 3 0 chr1 172423246 172423569 -24771863 + ORR1A2 LTR MaLR 3 326 -1 7 1900 836 298 8 43 chr1 172423569 172423727 -24771705 - MLT1E LTR MaLR -96 557 403 7 1900 518 225 100 42 chr1 172423763 172423953 -24771479 + MTEa LTR MaLR 170 370 -9 7 1900 245 300 63 3 chr1 172423954 172424088 -24771344 - MLT1E LTR MaLR -226 428 285 7 1900 260 260 26 13 chr1 172424835 172424913 -24770519 + MIR SINE MIR 8 86 -176 7 1900 1239 41 7 0 chr1 172425002 172425147 -24770285 + B1_Mm SINE Alu 2 147 0 7 1900 271 208 0 132 chr1 172425195 172425278 -24770154 + MLT1A LTR MaLR 65 136 -238 7 1900 198 71 0 0 chr1 172425293 172425321 -24770111 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1900 274 250 17 0 chr1 172425488 172425548 -24769884 + MIR SINE MIR 93 153 -109 7 1900 1837 281 48 32 chr1 172425559 172426272 -24769160 + L1MC1 LINE L1 5593 6316 -17 7 1900 535 261 6 75 chr1 172426801 172426975 -24768457 + RSINE1 SINE B4 4 165 0 7 1900 25 31 0 0 chr1 172426976 172427008 -24768424 + AT_rich Low_complexity Low_complexity 1 32 0 7 1900 209 426 0 0 chr1 172427416 172427578 -24767854 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 7 1900 814 269 78 20 chr1 172427698 172428071 -24767361 + L1MC3 LINE L1 5645 6047 -297 7 1900 209 267 137 30 chr1 172428601 172428673 -24766759 + MIR SINE MIR 6 84 -124 7 1900 468 0 0 0 chr1 172428673 172428725 -24766707 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1900 209 257 144 29 chr1 172428725 172428771 -24766661 + MIR SINE MIR 85 134 -74 7 1900 576 162 555 7 chr1 172428827 172428973 -24766459 - URR1B DNA MER1_type 0 225 1 7 1900 868 246 64 5 chr1 172429123 172429327 -24766105 + ID_B1 SINE B4 2 217 -7 7 1900 610 122 0 18 chr1 172429481 172429590 -24765842 + (AGGGGG)n Simple_repeat Simple_repeat 3 109 0 7 1900 234 277 46 0 chr1 172429666 172429731 -24765701 - L2 LINE L2 -527 2892 2825 7 1900 1433 99 13 55 chr1 172430527 172430762 -24764670 - URR1B DNA MER1_type 0 225 1 7 1900 416 291 0 17 chr1 172430883 172431002 -24764430 - PB1D10 SINE Alu 0 117 1 7 1900 180 0 0 0 chr1 172431136 172431156 -24764276 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1900 783 302 0 26 chr1 172431163 172431391 -24764041 - ID_B1 SINE B4 0 224 3 7 1900 654 260 95 52 chr1 172431401 172431612 -24763820 - B4A SINE B4 -72 220 1 7 1900 303 289 65 28 chr1 172432296 172432403 -24763029 + B1F SINE Alu 13 123 -26 7 1900 258 185 37 0 chr1 172432409 172432490 -24762942 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 7 1900 229 174 14 14 chr1 172432495 172432565 -24762867 + (CATA)n Simple_repeat Simple_repeat 2 71 0 7 1900 333 253 34 11 chr1 172434810 172434898 -24760534 + MIRb SINE MIR 63 152 -116 7 1900 185 292 108 59 chr1 172435056 172435158 -24760274 + MIRc SINE MIR 131 237 -31 7 1900 501 244 102 44 chr1 172435444 172435718 -24759714 + L1MB4 LINE L1 5874 6163 -17 7 1900 620 181 83 45 chr1 172436132 172436265 -24759167 + B1_Mur2 SINE Alu 5 142 -7 7 1900 448 301 124 51 chr1 172436498 172436869 -24758563 + L2a LINE L2 2991 3388 -38 7 1900 547 285 42 24 chr1 172437151 172437363 -24758069 + L1MB8 LINE L1 5794 6009 -169 7 1900 385 206 14 6 chr1 172437397 172437476 -24757956 + ID4 SINE ID 11 86 -66 7 1900 312 234 51 70 chr1 172437478 172437634 -24757798 + L1MB8 LINE L1 6026 6178 0 7 1900 457 304 40 0 chr1 172438723 172438848 -24756584 - B1F2 SINE Alu -1 148 19 7 1900 316 365 40 75 chr1 172438848 172438951 -24756481 - ID_B1 SINE B4 -2 222 3 7 1900 208 371 58 19 chr1 172438954 172439160 -24756272 - MIRb SINE MIR -8 260 47 7 1900 198 0 0 0 chr1 172439298 172439320 -24756112 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1900 289 295 112 15 chr1 172439403 172439537 -24755895 + MLT1D LTR MaLR 163 309 -196 8 1900 435 270 83 55 chr1 172439755 172439900 -24755532 + MLT1D LTR MaLR 309 457 -48 8 1900 561 317 71 4 chr1 172440747 172440972 -24754460 - MIRc SINE MIR -25 243 4 8 1900 1289 255 80 50 chr1 172441275 172441372 -24754060 + L1MB2 LINE L1 5507 5604 -638 8 1900 435 284 17 8 chr1 172441372 172441489 -24753943 + PB1 SINE Alu 2 119 -8 8 1900 1289 252 92 48 chr1 172441489 172441978 -24753454 + L1MB2 LINE L1 5604 6119 -52 8 1900 332 256 122 0 chr1 172442376 172442466 -24752966 + PB1D10 SINE Alu 5 105 -12 8 1900 573 72 0 0 chr1 172442466 172442549 -24752883 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 8 1900 250 345 35 0 chr1 172444868 172444955 -24750477 - MIR3 SINE MIR -9 199 110 8 1900 202 148 18 18 chr1 172445199 172445254 -24750178 + GA-rich Low_complexity Low_complexity 1 55 0 8 1900 245 29 29 0 chr1 172445334 172445368 -24750064 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 8 1900 610 194 26 46 chr1 172445370 172445521 -24749911 - B1F SINE Alu -1 148 1 8 1900 498 212 35 26 chr1 172445654 172445770 -24749662 - PB1D7 SINE Alu 0 120 4 8 1900 306 0 0 0 chr1 172447107 172447141 -24748291 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1900 229 179 29 15 chr1 172447152 172447220 -24748212 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 1900 311 289 40 53 chr1 172448066 172448216 -24747216 - HAL1-3A_ME LINE L1 -418 2440 2293 8 1900 1253 211 0 0 chr1 172448367 172448566 -24746866 + B3 SINE B2 9 207 -9 8 1900 227 103 26 0 chr1 172448757 172448796 -24746636 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 1900 421 354 0 0 chr1 172449494 172449607 -24745825 + PB1D7 SINE Alu 1 113 -7 8 1900 234 0 0 0 chr1 172449663 172449689 -24745743 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 8 1900 195 230 213 13 chr1 172451368 172451443 -24743989 + L2a LINE L2 3295 3384 -42 8 1900 520 250 32 8 chr1 172451471 172451596 -24743836 + B1F1 SINE Alu 5 132 -17 8 1900 21 36 0 0 chr1 172451620 172451648 -24743784 + AT_rich Low_complexity Low_complexity 1 28 0 8 1900 269 226 0 12 chr1 172452162 172452247 -24743185 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1900 216 297 27 13 chr1 172452953 172453028 -24742404 - MIR3 SINE MIR -23 185 110 8 1900 1006 241 26 38 chr1 172454557 172454902 -24740530 + L1M4 LINE L1 3731 4071 -2075 8 1900 212 122 24 0 chr1 172454908 172454949 -24740483 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1900 912 101 0 32 chr1 172454949 172455134 -24740298 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1900 358 217 76 0 chr1 172455156 172455266 -24740166 + PB1D7 SINE Alu 2 118 -31 8 1900 797 304 93 18 chr1 172455266 172455906 -24739526 + L1M4 LINE L1 4092 4850 -1296 8 1900 2096 169 93 3 chr1 172455973 172456359 -24739073 + MTC LTR MaLR 1 421 0 8 1900 608 252 189 8 chr1 172456405 172456665 -24738767 + L1M4 LINE L1 4857 5163 -983 8 1900 455 324 0 0 chr1 172456702 172456813 -24738619 + RSINE1 SINE B4 4 114 -51 8 1900 555 16 0 0 chr1 172456816 172456880 -24738552 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1900 256 272 10 29 chr1 172457088 172457241 -24738191 + L1M4 LINE L1 5610 5755 -429 8 1900 2018 274 39 53 chr1 172457276 172457897 -24737535 + RLTR18 LTR ERVK 1 612 -4 8 1900 228 259 0 0 chr1 172457992 172458073 -24737359 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1900 414 0 0 0 chr1 172458349 172458395 -24737037 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1900 441 274 0 10 chr1 172458784 172458880 -24736552 + PB1D10 SINE Alu 2 96 -21 8 1900 636 180 6 27 chr1 172458881 172459034 -24736398 + GA-rich Low_complexity Low_complexity 2 150 0 8 1900 1265 83 0 6 chr1 172459034 172459215 -24736217 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1900 636 180 6 27 chr1 172459215 172459244 -24736188 + polypurine Low_complexity Low_complexity 151 179 0 8 1900 492 202 0 92 chr1 172459282 172459391 -24736041 + B1F SINE Alu 43 141 -8 8 1900 340 304 101 60 chr1 172459794 172460011 -24735421 - RMER4A LTR ERVK -213 253 28 8 1900 911 316 62 45 chr1 172460109 172460467 -24734965 - MTD LTR MaLR -55 364 1 8 1900 300 257 29 4 chr1 172460580 172460692 -24734740 - B1F SINE Alu -107 204 1 8 1900 306 288 155 76 chr1 172461839 172462207 -24733225 + RMER10A LTR ERVL 18 414 -28 8 1900 694 176 7 37 chr1 172462434 172462570 -24732862 + B1_Mur1 SINE Alu 5 136 -13 8 1900 432 0 0 0 chr1 172462572 172462620 -24732812 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1900 2384 148 50 22 chr1 172463025 172463427 -24732005 + MTC LTR MaLR 1 413 -8 8 1900 489 296 55 25 chr1 172463558 172463721 -24731711 + B4A SINE B4 102 269 -23 8 1900 333 47 0 0 chr1 172463721 172463764 -24731668 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1900 261 0 0 0 chr1 172463779 172463808 -24731624 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1900 321 188 202 50 chr1 172464226 172464397 -24731035 + ORR1E LTR MaLR 63 264 -95 8 1900 207 0 0 0 chr1 172464912 172464935 -24730497 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1900 905 184 0 0 chr1 172464948 172465089 -24730343 - B1_Mur4 SINE Alu -9 141 1 8 1900 380 309 133 72 chr1 172466025 172466402 -24729030 + MLT1A1 LTR MaLR 2 401 -7 8 1900 657 215 69 8 chr1 172466858 172466989 -24728443 - RSINE1 SINE B4 -24 141 3 8 1900 261 256 0 0 chr1 172467917 172467999 -24727433 + (CA)n Simple_repeat Simple_repeat 1 82 0 8 1900 512 181 5 0 chr1 172468279 172468384 -24727048 + PB1D10 SINE Alu 13 117 0 8 1900 200 376 88 60 chr1 172468975 172469292 -24726140 - L2c LINE L2 -56 3331 3006 8 1900 243 203 206 55 chr1 172469410 172469483 -24725949 - RSINE1 SINE B4 -81 84 1 8 1900 919 137 0 27 chr1 172470711 172470861 -24724571 + URR1A DNA MER1_type 81 226 0 8 1900 400 251 97 79 chr1 172470861 172470928 -24724504 - CYRA11_Mm Unknown Y-chromosome -450 167 97 8 1900 252 0 0 0 chr1 172470948 172470976 -24724456 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1900 273 39 59 0 chr1 172471072 172471123 -24724309 + (CAA)n Simple_repeat Simple_repeat 1 54 0 8 1900 2300 138 18 18 chr1 172471157 172471549 -24723883 + ORR1B1 LTR MaLR 1 392 -2 8 1900 387 271 25 0 chr1 172472777 172472895 -24722537 + MIR SINE MIR 49 169 -93 8 1900 277 180 115 0 chr1 172473906 172473967 -24721465 + B1F SINE Alu 82 149 0 8 1900 865 269 5 33 chr1 172473977 172474192 -24721240 + ID_B1 SINE B4 3 211 -13 8 1900 707 218 117 15 chr1 172474217 172474413 -24721019 + B3 SINE B2 1 216 0 8 1900 327 65 0 0 chr1 172475232 172475278 -24720154 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1900 433 235 0 0 chr1 172475345 172475426 -24720006 + MTE2b LTR MaLR 259 339 -40 8 1900 590 195 195 0 chr1 172475465 172475583 -24719849 - RSINE1 SINE B4 -23 142 2 8 1900 362 307 28 7 chr1 172475608 172475749 -24719683 + L1MC4 LINE L1 7748 7891 -151 8 1900 690 247 16 62 chr1 172475754 172475948 -24719484 + B3 SINE B2 1 185 -31 8 1900 246 253 100 50 chr1 172475941 172476041 -24719391 + MT2B LTR ERVL 160 264 -337 8 1900 265 224 52 0 chr1 172475988 172476046 -24719386 + PB1D10 SINE Alu 53 113 -4 8 1900 293 208 13 0 chr1 172476235 172476312 -24719120 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 1900 207 0 0 0 chr1 172477130 172477153 -24718279 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1900 603 39 0 0 chr1 172477153 172477230 -24718202 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1900 721 201 213 0 chr1 172477276 172477450 -24717982 - B3 SINE B2 -5 211 1 8 1900 344 236 69 52 chr1 172477471 172477587 -24717845 - PB1D9 SINE Alu -2 118 1 8 1900 785 273 22 5 chr1 172477587 172477669 -24717763 - B4 SINE B4 -204 88 4 8 1900 2021 194 52 10 chr1 172477692 172478092 -24717340 - MTD LTR MaLR -2 417 1 8 1900 555 242 60 38 chr1 172479538 172479654 -24715778 + RSINE1 SINE B4 1 124 -41 8 1900 323 78 0 19 chr1 172479654 172479706 -24715726 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1900 555 242 60 38 chr1 172479706 172479722 -24715710 + RSINE1 SINE B4 125 136 -29 8 1900 2232 151 93 3 chr1 172479933 172480319 -24715113 + MTC LTR MaLR 1 421 0 8 1900 489 17 0 0 chr1 172480863 172480921 -24714511 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1900 192 77 0 0 chr1 172482684 172482710 -24712722 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1900 1023 214 29 0 chr1 172482717 172482923 -24712509 - B3 SINE B2 -4 212 1 8 1900 251 269 25 186 chr1 172483478 172483715 -24711717 + L2a LINE L2 3226 3424 -2 8 1900 760 312 24 59 chr1 172483900 172484237 -24711195 + ORR1E LTR MaLR 1 325 -34 8 1900 432 355 86 36 chr1 172484484 172484843 -24710589 + MLT2C1 LTR ERVL 18 394 -3 8 1900 1207 255 75 28 chr1 172485621 172485980 -24709452 + MTEa LTR MaLR 3 378 -1 8 1900 200 283 67 0 chr1 172486859 172486919 -24708513 - L3b LINE CR1 -18 4490 4427 8 1900 180 300 74 16 chr1 172487065 172487187 -24708245 - L3b LINE CR1 -587 3902 3774 8 1900 291 330 17 67 chr1 172487646 172487766 -24707666 + L2c LINE L2 3269 3382 -5 8 1900 216 368 23 0 chr1 172487792 172487879 -24707553 + MIRb SINE MIR 29 117 -151 8 1900 274 220 228 11 chr1 172487917 172488009 -24707423 - PB1D10 SINE Alu -4 113 2 8 1900 352 304 21 14 chr1 172488488 172488628 -24706804 + B1F1 SINE Alu 2 142 -7 8 1900 779 271 17 0 chr1 172489654 172489831 -24705601 - B4A SINE B4 -104 188 9 8 1900 413 272 134 51 chr1 172489929 172490146 -24705286 - L1MC5 LINE L1 -364 7597 7363 8 1900 367 326 44 15 chr1 172490172 172490309 -24705123 + ID_B1 SINE B4 84 224 0 8 1900 523 274 9 17 chr1 172490373 172490488 -24704944 + RSINE1 SINE B4 12 125 -40 8 1900 288 0 0 0 chr1 172490489 172490521 -24704911 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 237 422 293 159 55 chr1 172490699 172491064 -24704368 - L1MC5 LINE L1 -920 7041 6639 8 1901 423 0 0 0 chr1 172491694 172491741 -24703691 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1901 493 310 25 0 chr1 172491948 172492106 -24703326 - RSINE1 SINE B4 0 165 4 9 1901 657 194 0 16 chr1 172492352 172492478 -24702954 + B1_Mur1 SINE Alu 21 144 -5 9 1901 207 162 0 0 chr1 172492500 172492537 -24702895 + GA-rich Low_complexity Low_complexity 2 38 0 9 1901 265 216 149 4 chr1 172492809 172492944 -24702488 + L1M5 LINE L1 5680 5838 -402 9 1901 302 218 230 0 chr1 172492950 172493037 -24702395 + B4A SINE B4 186 292 0 9 1901 214 283 17 0 chr1 172493044 172493104 -24702328 + (CATA)n Simple_repeat Simple_repeat 2 62 0 9 1901 1389 82 16 0 chr1 172493166 172493349 -24702083 - B2_Mm2 SINE B2 -9 186 1 9 1901 293 226 102 45 chr1 172493383 172493441 -24701991 - PB1D7 SINE Alu -7 113 52 9 1901 3068 50 50 0 chr1 172493441 172493822 -24701610 - MTB LTR MaLR 0 400 1 9 1901 293 233 117 35 chr1 172493822 172493860 -24701572 - PB1D7 SINE Alu -98 51 7 9 1901 489 232 23 53 chr1 172494027 172494159 -24701273 - B1_Mur1 SINE Alu -17 132 5 9 1901 212 0 36 0 chr1 172494208 172494236 -24701196 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1901 1169 64 0 0 chr1 172494236 172494376 -24701056 - B1_Mus1 SINE Alu -7 141 2 9 1901 244 369 48 30 chr1 172494411 172494576 -24700856 + L3 LINE CR1 4218 4385 -104 9 1901 450 275 21 26 chr1 172494625 172494754 -24700678 + PB1D10 SINE Alu 3 127 -21 9 1901 886 178 0 0 chr1 172495022 172495168 -24700264 + B1_Mur4 SINE Alu 5 150 0 9 1901 231 257 0 0 chr1 172495208 172495282 -24700150 + GA-rich Low_complexity Low_complexity 4 77 0 9 1901 651 258 11 60 chr1 172495676 172495849 -24699583 - MLT1A LTR MaLR -18 449 193 9 1901 293 303 50 0 chr1 172495883 172495982 -24699450 - MLT1A LTR MaLR -270 104 1 9 1901 557 135 38 19 chr1 172497592 172497698 -24697734 - ORR1D1 LTR MaLR 0 374 267 9 1901 2174 127 65 60 chr1 172497706 172497916 -24697516 + ORR1B1 LTR MaLR 1 227 -167 9 1901 1199 56 131 0 chr1 172497916 172498076 -24697356 + B2_Mm2 SINE B2 1 181 -14 9 1901 2174 127 65 60 chr1 172498076 172498249 -24697183 + ORR1B1 LTR MaLR 228 386 -8 9 1901 321 115 31 47 chr1 172498243 172498307 -24697125 - ORR1D1 LTR MaLR -315 63 1 9 1901 810 171 0 0 chr1 172498763 172498892 -24696540 - B1_Mus2 SINE Alu -9 138 10 9 1901 1443 134 119 32 chr1 172500232 172500426 -24695006 + RMER17C LTR ERVK 1 231 -179 1 1901 717 97 0 0 chr1 172500426 172500529 -24694903 + (TC)n Simple_repeat Simple_repeat 2 104 0 2 1901 1443 134 119 32 chr1 172500529 172500703 -24694729 + RMER17C LTR ERVK 232 400 -10 1 1901 734 226 50 50 chr1 172500964 172501164 -24694268 + URR1B DNA MER1_type 24 223 -2 3 1901 876 234 36 0 chr1 172501290 172501482 -24693950 - B3 SINE B2 -14 202 4 4 1901 585 244 107 0 chr1 172502210 172502341 -24693091 + ID_B1 SINE B4 79 223 -1 5 1901 1682 189 206 34 chr1 172502516 172503015 -24692417 - RMER4B LTR ERVK 0 585 1 6 1901 527 268 87 27 chr1 172503245 172503635 -24691797 - MLT1D LTR MaLR -13 492 43 7 1901 781 223 20 26 chr1 172503976 172504180 -24691252 - B3A SINE B2 -1 215 6 8 1901 461 274 18 0 chr1 172504183 172504296 -24691136 - ID_B1 SINE B4 -23 201 87 9 1901 569 245 234 9 chr1 172504350 172504415 -24691017 - B4A SINE B4 -18 274 207 1 1901 225 0 0 0 chr1 172504415 172504440 -24690992 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1901 569 245 234 9 chr1 172504440 172504596 -24690836 - B4A SINE B4 -86 206 5 1 1901 431 246 114 45 chr1 172504748 172504880 -24690552 - B3A SINE B2 -52 146 6 1 1901 308 284 0 26 chr1 172504908 172504984 -24690448 - ID4_ SINE ID 0 83 10 1 1901 388 261 0 42 chr1 172505005 172505125 -24690307 - PB1D10 SINE Alu -1 116 2 1 1901 305 293 73 22 chr1 172505495 172505631 -24689801 + L1MC4 LINE L1 6737 6879 -1163 1 1901 268 210 45 61 chr1 172505846 172505912 -24689520 + PB1D10 SINE Alu 34 98 -51 1 1901 245 361 69 0 chr1 172505940 172506084 -24689348 + MamRep605 Unknown Unknown 287 440 -436 1 1901 260 327 58 29 chr1 172506132 172506305 -24689127 + MamRep605 Unknown Unknown 524 701 -175 1 1901 238 308 72 40 chr1 172506322 172506474 -24688958 + MER5B DNA MER1_type 22 178 0 1 1901 402 46 46 0 chr1 172506746 172506811 -24688621 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1901 240 224 17 17 chr1 172507197 172507256 -24688176 - MIR SINE MIR -58 150 92 2 1901 435 252 120 120 chr1 172508036 172508073 -24687359 + B3 SINE B2 4 39 -177 2 1901 955 146 7 0 chr1 172508073 172508217 -24687215 + B1_Mus2 SINE Alu 1 145 -2 2 1901 435 252 120 120 chr1 172508217 172508346 -24687086 + B3 SINE B2 40 170 -46 2 1901 307 213 40 50 chr1 172508754 172508853 -24686579 + L1MDa LINE L1 1204 1301 -5332 2 1901 2090 88 36 0 chr1 172509374 172509681 -24685751 + ORR1A2 LTR MaLR 2 319 -8 2 1901 414 257 13 94 chr1 172510520 172510679 -24684753 + B4A SINE B4 1 146 -146 2 1901 243 308 0 90 chr1 172511686 172511786 -24683646 - MIR SINE MIR -159 109 19 2 1901 628 200 108 0 chr1 172511818 172511948 -24683484 + B1_Mus2 SINE Alu 1 144 -3 2 1901 842 76 0 8 chr1 172511948 172512068 -24683364 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 2 1901 297 0 0 0 chr1 172512445 172512478 -24682954 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2 1901 818 254 20 45 chr1 172512588 172512835 -24682597 + MTE2b LTR MaLR 139 379 0 3 1901 320 245 58 15 chr1 172512835 172513017 -24682415 + L1MB7 LINE L1 5883 6105 -73 3 1901 496 328 11 38 chr1 172513026 172513199 -24682233 + B4A SINE B4 55 222 -70 3 1901 720 251 23 23 chr1 172513199 172513370 -24682062 + B3A SINE B2 2 172 -26 3 1901 753 12 0 0 chr1 172513418 172513504 -24681928 + (GAGAA)n Simple_repeat Simple_repeat 4 89 0 3 1901 552 271 15 119 chr1 172514051 172514252 -24681180 + B4 SINE B4 7 186 -106 3 1901 603 243 108 0 chr1 172514271 172514419 -24681013 + B3 SINE B2 2 165 -51 3 1901 333 82 0 0 chr1 172514420 172514469 -24680963 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1901 302 275 85 38 chr1 172514680 172514786 -24680646 + MLT1H1 LTR MaLR 440 550 -5 3 1901 871 258 41 44 chr1 172515083 172515427 -24680005 + RLTR15 LTR ERVK 1 343 -16 3 1901 366 291 41 65 chr1 172515444 172515613 -24679819 + ORR1E LTR MaLR 26 190 -169 4 1901 397 196 50 20 chr1 172515815 172515914 -24679518 + ORR1E LTR MaLR 256 357 -2 4 1901 276 208 54 27 chr1 172516302 172516376 -24679056 - PB1D7 SINE Alu -42 78 3 4 1901 600 192 33 16 chr1 172516376 172516440 -24678992 - ID SINE ID -141 83 18 4 1901 282 249 39 7 chr1 172517414 172517502 -24677930 - B1F SINE Alu -2 115 24 4 1901 559 231 5 126 chr1 172517682 172517905 -24677527 + B3A SINE B2 1 196 -2 4 1901 477 0 0 0 chr1 172518940 172518993 -24676439 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1901 204 125 0 0 chr1 172519893 172519925 -24675507 + (CGG)n Simple_repeat Simple_repeat 2 33 0 4 1901 46 19 0 0 chr1 172520018 172520071 -24675361 + GC_rich Low_complexity Low_complexity 1 53 0 4 1901 1220 39 0 7 chr1 172520568 172520723 -24674709 + (GAAAA)n Simple_repeat Simple_repeat 5 158 0 4 1901 3033 137 35 64 chr1 172520818 172521409 -24674023 + RMER15 LTR ERVL 2 575 0 4 1901 230 342 7 46 chr1 172521539 172521559 -24673873 + MT2A LTR ERVL 1 17 -516 5 1901 2868 159 11 32 chr1 172521559 172522090 -24673342 + RLTR28 LTR ERVL 2 521 -3 5 1901 230 342 7 46 chr1 172522090 172522222 -24673210 + MT2A LTR ERVL 18 147 -386 5 1901 1057 289 92 0 chr1 172522091 172522416 -24673016 + MTEa LTR MaLR 17 371 -8 5 1901 381 276 0 17 chr1 172522503 172522621 -24672811 - PB1D10 SINE Alu 0 117 2 5 1901 249 269 210 6 chr1 172523442 172523599 -24671833 - MIR SINE MIR -32 230 42 5 1901 197 108 27 0 chr1 172523959 172523996 -24671436 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1901 412 263 0 20 chr1 172524124 172524225 -24671207 - PB1D10 SINE Alu -7 110 12 5 1901 243 261 0 0 chr1 172524681 172524746 -24670686 - MIR SINE MIR -90 172 108 5 1901 645 239 30 141 chr1 172524815 172525049 -24670383 + MT2A LTR ERVL 1 208 -325 5 1901 1013 69 7 0 chr1 172525063 172525208 -24670224 - B1_Mus2 SINE Alu 0 147 2 5 1901 848 259 116 0 chr1 172525208 172525422 -24670010 + MT2A LTR ERVL 193 431 -102 5 1901 235 269 90 62 chr1 172525425 172525569 -24669863 - RMER5 LTR ERV1 -24 510 359 6 1901 1099 65 0 0 chr1 172525569 172525707 -24669725 + B1_Mm SINE Alu 1 138 -9 6 1901 207 0 0 0 chr1 172525707 172525730 -24669702 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1901 180 0 0 0 chr1 172525736 172525756 -24669676 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1901 235 269 90 62 chr1 172525756 172525781 -24669651 - RMER5 LTR ERV1 -180 354 329 6 1901 2250 95 13 7 chr1 172526013 172526320 -24669112 - RLTR27 LTR ERVK 0 309 1 6 1901 1423 180 0 22 chr1 172526320 172526587 -24668845 - MMERVK10C-int LTR ERVK 0 7581 7321 6 1901 363 314 29 23 chr1 172526712 172526885 -24668547 - MMERVK10C-int LTR ERVK -501 7080 6907 6 1901 3277 290 48 50 chr1 172527103 172528934 -24666498 - MMERVK10C-int LTR ERVK -2104 5477 3652 6 1901 283 264 0 62 chr1 172529210 172529323 -24666109 + T-rich Low_complexity Low_complexity 5 110 0 6 1901 646 254 45 45 chr1 172529324 172529522 -24665910 - RLTR10-int LTR ERVK -1135 852 655 6 1901 368 51 5 26 chr1 172529554 172529608 -24665824 - RLTR10-int LTR ERVK -7314 267 163 6 1901 2268 89 13 10 chr1 172529633 172529941 -24665491 - RLTR27 LTR ERVK 0 309 1 6 1901 382 234 0 47 chr1 172530224 172530309 -24665123 + PB1D7 SINE Alu 25 105 -15 6 1901 1035 236 117 19 chr1 172530318 172530634 -24664798 + ORR1D2 LTR MaLR 21 367 -3 6 1901 2959 109 43 2 chr1 172530634 172531075 -24664357 + Lx LINE L1 6196 6654 0 7 1901 311 185 0 0 chr1 172531405 172531459 -24663973 + B3A SINE B2 1 54 -144 7 1901 864 207 229 75 chr1 172531469 172531935 -24663497 + RLTR20C LTR ERVK 2 539 -12 7 1901 472 238 0 0 chr1 172531966 172532050 -24663382 + B3 SINE B2 76 159 -57 7 1901 21 36 0 0 chr1 172532195 172532223 -24663209 + AT_rich Low_complexity Low_complexity 1 28 0 7 1901 816 212 7 0 chr1 172532281 172532418 -24663014 + B1_Mur1 SINE Alu 1 138 -11 7 1901 259 232 58 0 chr1 172532522 172532591 -24662841 + PB1 SINE Alu 53 125 -2 7 1901 300 312 44 35 chr1 172532605 172532718 -24662714 + B1F SINE Alu 2 115 -2 7 1901 206 211 0 0 chr1 172532743 172532781 -24662651 + GA-rich Low_complexity Low_complexity 3 40 0 7 1901 305 318 11 0 chr1 172533117 172533205 -24662227 + PB1 SINE Alu 3 91 -36 7 1901 522 46 0 0 chr1 172533938 172534003 -24661429 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1901 714 119 7 15 chr1 172534024 172534160 -24661272 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 8 1901 197 163 20 0 chr1 172534530 172534579 -24660853 + (TTG)n Simple_repeat Simple_repeat 2 51 0 8 1901 612 0 0 0 chr1 172534730 172534798 -24660634 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1901 235 320 19 48 chr1 172535205 172535310 -24660122 + RSINE1 SINE B4 3 104 -61 8 1901 393 117 0 0 chr1 172535443 172535503 -24659929 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1901 699 235 299 61 chr1 172536479 172536794 -24658638 + L1MB2 LINE L1 5681 6070 -110 8 1901 482 239 51 8 chr1 172536798 172536916 -24658516 + RSINE1 SINE B4 3 125 -40 8 1901 541 230 179 41 chr1 172536917 172536931 -24658501 + ID SINE ID 3 16 -208 8 1901 2600 151 59 24 chr1 172536931 172537473 -24657959 + RLTR31_Mm LTR ERVK 1 561 0 8 1901 541 230 179 41 chr1 172537473 172537653 -24657779 + ID_B1 SINE B4 17 224 0 8 1901 584 305 7 7 chr1 172537664 172537816 -24657616 + RSINE1 SINE B4 4 155 -10 8 1901 486 194 21 27 chr1 172538370 172538483 -24656949 + PB1D10 SINE Alu 10 117 -32 9 1901 186 103 0 0 chr1 172539154 172539183 -24656249 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 9 1901 845 201 6 22 chr1 172539301 172539484 -24655948 + B3 SINE B2 37 216 0 9 1901 346 326 0 70 chr1 172539522 172539664 -24655768 + B1F2 SINE Alu 1 132 -17 9 1901 1242 81 0 0 chr1 172539692 172539913 -24655519 + (GAAA)n Simple_repeat Simple_repeat 1 221 0 9 1901 324 0 0 0 chr1 172539913 172539949 -24655483 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 9 1901 639 236 120 5 chr1 172540720 172540912 -24654520 + ID_B1 SINE B4 2 215 -9 9 1901 327 288 29 75 chr1 172541523 172541696 -24653736 - MIRc SINE MIR -29 239 75 9 1901 1401 60 11 21 chr1 172542778 172542967 -24652465 + B2_Mm2 SINE B2 2 188 -7 9 1901 251 314 0 14 chr1 172543033 172543104 -24652328 - ID4_ SINE ID -9 74 5 9 1901 372 284 0 18 chr1 172543115 172543226 -24652206 - PB1D10 SINE Alu -8 109 1 1 1901 1303 142 66 9 chr1 172543604 172543817 -24651615 - URR1B DNA MER1_type 0 225 1 1 1901 10419 37 2 2 chr1 172544009 172545935 -24649497 - L1Md_F2 LINE L1 0 6582 4657 1 1901 2637 46 0 0 chr1 172545929 172546236 -24649196 + L1_Mm LINE L1 5462 5768 -115 1 1901 1399 89 5 0 chr1 172546259 172546449 -24648983 - B2_Mm1t SINE B2 -1 192 2 1 1901 186 43 0 0 chr1 172546460 172546483 -24648949 + (CTTA)n Simple_repeat Simple_repeat 1 23 0 1 1901 619 281 25 10 chr1 172546485 172546686 -24648746 - ID_B1 SINE B4 -20 204 1 1 1901 441 346 37 33 chr1 172547302 172547517 -24647915 + B4A SINE B4 1 216 -76 1 1901 269 294 22 0 chr1 172547531 172547623 -24647809 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1901 4712 181 70 5 chr1 172547652 172548520 -24646912 + RMER1B Other Other 4 928 -138 1 1901 247 159 0 0 chr1 172548524 172548568 -24646864 - B3 SINE B2 -153 63 20 1 1901 25 51 0 0 chr1 172548845 172548884 -24646548 + AT_rich Low_complexity Low_complexity 1 39 0 1 1901 480 232 44 18 chr1 172549269 172549383 -24646049 + PB1D7 SINE Alu 3 119 -1 1 1901 616 204 0 17 chr1 172549632 172549747 -24645685 - PB1D7 SINE Alu 0 120 8 1 1901 544 285 95 0 chr1 172549968 172550105 -24645327 + RSINE1 SINE B4 8 157 -8 1 1901 279 0 0 0 chr1 172550120 172550151 -24645281 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1901 900 65 29 7 chr1 172550914 172551054 -24644378 + (GGGAGA)n Simple_repeat Simple_repeat 3 145 0 1 1901 337 197 0 90 chr1 172551198 172551217 -24644215 + ID SINE ID 1 19 -205 1 1901 3079 143 81 48 chr1 172551217 172551885 -24643547 - RMER6C LTR ERVK 0 690 1 1 1901 337 197 0 90 chr1 172551885 172551943 -24643489 + ID SINE ID 20 71 -153 1 1901 623 212 0 0 chr1 172552180 172552293 -24643139 - PB1D7 SINE Alu 0 120 8 1 1901 449 252 87 0 chr1 172552335 172552450 -24642982 + ID_B1 SINE B4 99 223 -1 1 1901 254 272 96 37 chr1 172552464 172552651 -24642781 - L1MEc LINE L1 -4887 1513 1316 1 1901 513 0 0 0 chr1 172553120 172553177 -24642255 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1901 320 159 280 54 chr1 172553639 172553732 -24641700 - PB1D7 SINE Alu -1 119 6 1 1901 180 111 0 0 chr1 172553771 172553798 -24641634 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 1 1901 808 147 15 0 chr1 172553906 172554042 -24641390 - B1_Mur1 SINE Alu -1 148 11 1 1901 22 0 0 0 chr1 172554291 172554313 -24641119 + AT_rich Low_complexity Low_complexity 1 22 0 1 1901 13602 75 44 13 chr1 172554890 172557496 -24637936 - L1VL2 LINE L1 -636 2979 306 1 1901 252 59 0 0 chr1 172558076 172558110 -24637322 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1901 500 245 9 9 chr1 172558113 172558220 -24637212 - PB1D7 SINE Alu -12 108 2 1 1901 968 183 11 16 chr1 172558423 172558613 -24636819 + B2_Mm2 SINE B2 1 208 -8 1 1901 753 43 0 0 chr1 172558628 172558721 -24636711 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 1 1901 2620 164 85 54 chr1 172558865 172559535 -24635897 + L1_Mur3 LINE L1 4270 4960 -920 1 1901 325 293 0 0 chr1 172559769 172559851 -24635581 - ID4_ SINE ID 0 83 2 1 1901 543 69 0 0 chr1 172560057 172560129 -24635303 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1901 413 202 34 111 chr1 172560130 172560247 -24635185 - RSINE1 SINE B4 -41 124 17 1 1901 627 304 187 27 chr1 172560311 172560568 -24634864 + MLT2B3 LTR ERVL 58 355 -199 1 1901 1646 218 167 47 chr1 172560549 172561040 -24634392 + RMER19B LTR ERVK 335 884 -18 1 1901 1327 303 48 11 chr1 172561704 172562181 -24633251 + ERVL-int LTR ERVL 1844 2338 -3419 1 1901 429 238 0 45 chr1 172562241 172562351 -24633081 + ORR1E LTR MaLR 1 105 -254 1 1901 272 253 80 0 chr1 172562353 172562428 -24633004 - MLT1A1 LTR MaLR -325 83 3 1 1901 1605 185 81 17 chr1 172562988 172563346 -24632086 + ORR1C2 LTR MaLR 1 381 -3 1 1901 305 311 44 112 chr1 172564136 172564203 -24631229 - B2_Mm2 SINE B2 -2 193 129 1 1901 551 81 12 0 chr1 172564203 172564289 -24631143 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1901 631 231 95 2 chr1 172564289 172564427 -24631005 - B3A SINE B2 -49 149 2 1 1901 773 151 72 0 chr1 172565159 172565298 -24630134 + B1_Mur3 SINE Alu 1 149 0 1 1901 721 208 5 9 chr1 172565300 172565526 -24629906 + GA-rich Low_complexity Low_complexity 1 224 0 1 1901 180 0 0 0 chr1 172565554 172565574 -24629858 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1901 352 288 46 75 chr1 172565579 172565772 -24629660 - MIR3 SINE MIR -15 193 10 1 1901 353 303 71 24 chr1 172566098 172566267 -24629165 + L1M4c LINE L1 2174 2350 -4034 1 1901 597 61 0 0 chr1 172566391 172566473 -24628959 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1901 240 245 0 0 chr1 172566847 172566896 -24628536 + C-rich Low_complexity Low_complexity 6 54 0 1 1901 1232 68 0 0 chr1 172567162 172567310 -24628122 + B1_Mus1 SINE Alu 1 148 0 1 1901 211 67 67 0 chr1 172567310 172567355 -24628077 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 1 1901 852 10 0 0 chr1 172567507 172567604 -24627828 + (GA)n Simple_repeat Simple_repeat 1 97 0 1 1901 243 253 42 52 chr1 172567726 172567822 -24627610 - ORR1E LTR MaLR -239 120 26 1 1901 806 279 24 5 chr1 172567834 172568043 -24627389 - MTEb LTR MaLR -12 367 155 1 1901 184 257 183 14 chr1 172568231 172568302 -24627130 + L3 LINE CR1 3293 3375 -1114 1 1901 841 262 60 46 chr1 172568695 172568979 -24626453 - B4A SINE B4 -4 288 1 1 1901 239 231 0 0 chr1 172570089 172570141 -24625291 + ID2 SINE ID 13 64 -19 1 1901 248 246 18 0 chr1 172570141 172570198 -24625234 + GA-rich Low_complexity Low_complexity 3 60 0 1 1901 423 0 0 0 chr1 172570253 172570300 -24625132 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1901 264 122 0 0 chr1 172570455 172570496 -24624936 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1901 348 293 95 29 chr1 172570641 172570778 -24624654 + B1F SINE Alu 4 149 0 1 1901 252 286 18 101 chr1 172571604 172571643 -24623789 - L2a LINE L2 -3 3423 3383 1 1901 1929 158 57 62 chr1 172571643 172572015 -24623417 + ORR1D1 LTR MaLR 1 370 -4 1 1901 252 311 94 77 chr1 172572015 172572231 -24623201 - L2a LINE L2 -44 3382 3101 1 1901 1370 71 21 16 chr1 172572551 172572737 -24622695 - B2_Mm2 SINE B2 -8 187 1 1 1901 254 241 0 56 chr1 172572771 172572951 -24622481 + (TA)n Simple_repeat Simple_repeat 1 170 0 1 1901 2047 166 201 14 chr1 172573353 172573792 -24621640 - RLTR28 LTR ERVL 0 524 4 1 1901 216 0 0 0 chr1 172574268 172574292 -24621140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1901 327 264 80 32 chr1 172575376 172575389 -24620043 - B1F SINE Alu -2 147 18 1 1901 416 259 36 27 chr1 172575389 172575500 -24619932 - ID_B1 SINE B4 -14 210 99 1 1901 549 0 0 0 chr1 172575632 172575693 -24619739 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1901 280 363 128 39 chr1 172577077 172577389 -24618043 + L2b LINE L2 3035 3374 -1 1 1901 258 32 0 0 chr1 172577773 172577804 -24617628 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1901 1520 133 4 26 chr1 172580171 172580402 -24615030 - URR1A DNA MER1_type 0 226 1 1 1901 296 227 15 15 chr1 172580882 172580949 -24614483 + RSINE1 SINE B4 11 77 -88 1 1901 531 222 9 18 chr1 172581025 172581135 -24614297 + PB1D10 SINE Alu 1 109 -8 1 1901 222 244 147 53 chr1 172581895 172581990 -24613442 - MIRc SINE MIR -1 267 164 1 1901 1061 176 10 14 chr1 172583007 172583214 -24612218 - B3 SINE B2 -10 206 1 1 1901 463 312 81 73 chr1 172583215 172583632 -24611800 - L1ME3B LINE L1 -233 6007 5606 1 1901 797 132 351 6 chr1 172583632 172583800 -24611632 - URR1A DNA MER1_type 0 226 1 1 1901 463 312 81 73 chr1 172583800 172583914 -24611518 - L1ME3B LINE L1 -635 5605 5472 1 1901 380 278 69 9 chr1 172584681 172584797 -24610635 + ID_B1 SINE B4 96 218 -6 1 1901 260 284 83 41 chr1 172585681 172585802 -24609630 + L2b LINE L2 3239 3364 -11 1 1901 247 312 258 0 chr1 172588411 172588539 -24606893 - MER5A1 DNA MER1_type -5 161 1 1 1901 315 0 0 0 chr1 172588752 172588787 -24606645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1901 1212 75 0 0 chr1 172588805 172588951 -24606481 - B1_Mus1 SINE Alu -2 146 1 1 1901 361 338 55 61 chr1 172588963 172589127 -24606305 - RSINE1 SINE B4 0 165 3 1 1901 277 281 37 45 chr1 172589279 172589413 -24606019 - MIRb SINE MIR -69 199 67 1 1901 348 276 13 0 chr1 172590009 172590085 -24605347 - ID4 SINE ID -5 78 2 1 1901 217 367 51 0 chr1 172590137 172590216 -24605216 - B1F SINE Alu -26 123 41 1 1901 1887 190 32 43 chr1 172590229 172590669 -24604763 - Lx5 LINE L1 -1 7049 6615 1 1901 289 303 0 33 chr1 172590735 172590827 -24604605 - BC1_Mm scRNA scRNA -60 92 4 1 1901 480 210 50 10 chr1 172590907 172591008 -24604424 - RSINE1 SINE B4 -13 152 48 1 1901 487 192 11 157 chr1 172591084 172591269 -24604163 - B3A SINE B2 -1 197 40 1 1901 1182 119 5 35 chr1 172591467 172591667 -24603765 - B2_Mm2 SINE B2 0 195 2 1 1901 303 324 27 27 chr1 172592948 172593059 -24602373 + MER94 DNA AcHobo 24 134 0 1 1901 217 329 24 35 chr1 172593085 172593170 -24602262 - MIRc SINE MIR -65 203 120 1 1901 241 248 48 96 chr1 172593342 172593467 -24601965 + RMER6C LTR ERVK 113 231 -459 1 1901 705 170 0 0 chr1 172593367 172593473 -24601959 + B1_Mur2 SINE Alu 13 118 -31 1 1901 180 0 0 0 chr1 172593475 172593495 -24601937 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1 1901 920 273 25 0 chr1 172593988 172594186 -24601246 - ID_B1 SINE B4 -18 206 4 1 1901 209 140 0 95 chr1 172594349 172594360 -24601072 + A-rich Low_complexity Low_complexity 1 11 0 2 1901 1202 56 0 0 chr1 172594360 172594503 -24600929 + B1_Mus1 SINE Alu 5 147 -1 2 1901 209 140 0 95 chr1 172594503 172594554 -24600878 + A-rich Low_complexity Low_complexity 12 56 0 2 1901 209 270 184 18 chr1 172595953 172596065 -24599367 + MIRb SINE MIR 65 201 -67 2 1901 186 293 52 26 chr1 172597042 172597119 -24598313 - MIR3 SINE MIR -12 196 118 2 1901 287 327 99 32 chr1 172598074 172598417 -24597015 + L2b LINE L2 2860 3230 -145 2 1901 290 298 28 19 chr1 172598420 172598526 -24596906 - PB1D10 SINE Alu 0 117 11 2 1901 268 265 44 0 chr1 172598652 172598720 -24596712 + ID SINE ID 2 72 -152 2 1901 242 270 32 0 chr1 172599487 172599550 -24595882 + tRNA-Ala-GCA tRNA tRNA 8 72 -3 2 1901 556 246 75 16 chr1 172599619 172599805 -24595627 + RMER30 DNA MER1_type 5 201 -1 2 1901 1816 185 144 14 chr1 172600040 172600407 -24595025 + MTD LTR MaLR 3 417 -2 2 1901 437 311 0 0 chr1 172600794 172600900 -24594532 + PB1D10 SINE Alu 5 110 -7 2 1901 1771 163 101 32 chr1 172601399 172601747 -24593685 - ORR1D1 LTR MaLR -2 372 1 2 1901 378 85 0 0 chr1 172601848 172601907 -24593525 + (TCTG)n Simple_repeat Simple_repeat 1 59 0 2 1901 664 317 78 4 chr1 172601935 172602204 -24593228 - B4A SINE B4 -1 291 3 2 1901 229 153 34 34 chr1 172602206 172602294 -24593138 + CT-rich Low_complexity Low_complexity 1 88 0 2 1901 611 271 129 10 chr1 172603205 172603414 -24592018 - Lx8 LINE L1 -247 7226 6993 2 1901 292 56 56 0 chr1 172603639 172603693 -24591739 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 2 1901 257 310 0 0 chr1 172603788 172603846 -24591586 - PB1D10 SINE Alu -42 75 18 2 1901 235 288 92 70 chr1 172603864 172604006 -24591426 + YREP_Mm Unknown Unknown 151 295 -1517 2 1901 672 246 52 0 chr1 172603892 172604026 -24591406 - B1F2 SINE Alu -7 142 2 2 1901 210 341 102 0 chr1 172604050 172604138 -24591294 - PB1 SINE Alu -28 99 3 2 1901 453 278 55 16 chr1 172604138 172604196 -24591236 - ID SINE ID -137 87 25 2 1901 189 0 0 0 chr1 172604881 172604902 -24590530 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1901 1034 241 81 42 chr1 172605366 172605693 -24589739 - ORR1E LTR MaLR 0 367 1 2 1901 334 324 67 29 chr1 172605695 172605800 -24589632 - MER45R DNA Tip100 -1472 109 1 2 1901 1320 227 139 21 chr1 172607182 172607520 -24587912 - MTE2b LTR MaLR 0 379 2 2 1901 663 289 146 32 chr1 172607814 172608215 -24587217 - MLT1D LTR MaLR -26 479 32 2 1901 725 268 24 0 chr1 172608231 172608395 -24587037 - MTE2b LTR MaLR -2 377 210 2 1901 357 292 38 0 chr1 172608442 172608548 -24586884 - MTE2b LTR MaLR -269 110 1 2 1901 196 306 81 129 chr1 172610018 172610142 -24585290 - L2b LINE L2 -18 3357 3240 2 1901 205 174 29 0 chr1 172610144 172610213 -24585219 + GA-rich Low_complexity Low_complexity 1 71 0 2 1901 258 294 14 29 chr1 172610217 172610287 -24585145 + ID4_ SINE ID 1 69 -14 2 1901 258 56 0 0 chr1 172610296 172610332 -24585100 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1901 1664 168 53 12 chr1 172610371 172610806 -24584626 - RMER17C LTR ERVK -519 439 16 2 1901 231 208 0 0 chr1 172612502 172612555 -24582877 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1901 23 33 0 0 chr1 172612557 172612587 -24582845 + AT_rich Low_complexity Low_complexity 1 30 0 2 1901 1707 134 3 10 chr1 172613076 172613369 -24582063 - ORR1A2 LTR MaLR -36 291 1 2 1901 208 137 39 0 chr1 172613418 172613469 -24581963 + CT-rich Low_complexity Low_complexity 1 53 0 2 1901 1739 224 64 24 chr1 172614634 172614781 -24580651 + RCHARR1 DNA MER1_type 213 367 -607 2 1901 591 74 0 21 chr1 172614781 172614878 -24580554 + Lx2 LINE L1 6902 6996 -1 2 1901 1739 224 64 24 chr1 172614878 172615183 -24580249 + RCHARR1 DNA MER1_type 368 683 -291 2 1901 1882 143 6 18 chr1 172615194 172615536 -24579896 - ORR1B1 LTR MaLR -8 386 49 2 1901 483 107 155 0 chr1 172615544 172615647 -24579785 + RCHARR1 DNA MER1_type 688 806 -168 2 1901 933 264 86 50 chr1 172615646 172616005 -24579427 - MTE2a LTR MaLR -7 372 1 2 1901 429 279 68 0 chr1 172616005 172616165 -24579267 + RCHARR1 DNA MER1_type 803 973 -1 2 1901 258 274 24 0 chr1 172616551 172616635 -24578797 + MIRc SINE MIR 49 134 -134 2 1901 782 251 24 28 chr1 172616728 172616941 -24578491 + ID_B1 SINE B4 5 216 -8 2 1901 282 337 27 69 chr1 172617109 172617297 -24578135 + MIRc SINE MIR 42 221 -47 2 1901 792 268 40 51 chr1 172617350 172617625 -24577807 + B4A SINE B4 3 274 -18 2 1901 474 286 4 8 chr1 172617631 172617893 -24577539 + (CA)n Simple_repeat Simple_repeat 1 260 0 2 1901 6700 34 0 0 chr1 172618144 172618920 -24576512 - L1Md_T LINE L1 0 6582 5807 2 1901 9469 11 0 0 chr1 172618920 172619969 -24575463 + L1Md_T LINE L1 4767 5815 -68 2 1901 504 216 18 18 chr1 172619976 172620089 -24575343 - L1MD3 LINE L1 -13 7982 7870 2 1901 287 326 36 107 chr1 172620476 172620672 -24574760 - LTR78 LTR ERV1 -40 1264 1083 2 1901 265 181 55 14 chr1 172620672 172620745 -24574687 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1901 425 284 0 19 chr1 172620746 172620850 -24574582 - PB1D10 SINE Alu -15 102 1 2 1901 1111 183 4 78 chr1 172620883 172621114 -24574318 + B3 SINE B2 3 216 0 2 1901 628 130 9 9 chr1 172621297 172621413 -24574019 + (GGGA)n Simple_repeat Simple_repeat 3 118 0 2 1901 456 230 149 14 chr1 172621608 172621749 -24573683 - LTR78 LTR ERV1 -688 616 457 2 237 285 244 23 11 chr1 172621758 172621845 -24573587 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 2 1902 709 84 183 0 chr1 172621976 172622107 -24573325 + L1_Mus4 LINE L1 6482 6636 0 2 1902 2649 127 29 24 chr1 172622508 172622927 -24572505 - MTC LTR MaLR 0 421 1 2 1902 266 306 45 27 chr1 172623811 172623922 -24571510 - MLT1N2 LTR MaLR -13 549 437 2 1902 1137 121 0 0 chr1 172624449 172624672 -24570760 + (TG)n Simple_repeat Simple_repeat 1 223 0 2 1902 615 181 467 0 chr1 172625958 172626157 -24569275 - MT2A LTR ERVL 0 533 242 2 1902 3437 155 30 10 chr1 172626219 172626826 -24568606 - RLTR17 LTR ERVK -73 619 1 2 1902 493 248 22 29 chr1 172626826 172626963 -24568469 - MT2A LTR ERVL -329 204 69 2 1902 497 237 41 103 chr1 172626944 172627090 -24568342 - MT2A LTR ERVL -394 139 3 2 1902 403 322 8 24 chr1 172627667 172627791 -24567641 - RSINE1 SINE B4 -6 159 38 2 1902 729 0 0 0 chr1 172628840 172628921 -24566511 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 2 1902 513 115 0 0 chr1 172628921 172628999 -24566433 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 1902 549 0 0 0 chr1 172629602 172629663 -24565769 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1902 497 280 30 6 chr1 172630020 172630189 -24565243 + MER5B DNA MER1_type 4 176 -2 2 1902 579 29 0 0 chr1 172630644 172630713 -24564719 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 2 1902 295 140 0 0 chr1 172630865 172630915 -24564517 - ORR1D1 LTR MaLR 0 374 325 2 1902 372 43 0 0 chr1 172632940 172632986 -24562446 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1902 242 164 71 18 chr1 172632989 172633045 -24562387 - B3 SINE B2 -155 61 3 2 1902 236 284 24 12 chr1 172633060 172633142 -24562290 + MIR SINE MIR 178 260 -2 2 1902 410 297 67 38 chr1 172633851 172634061 -24561371 + ORR1E LTR MaLR 9 224 -135 2 1902 281 338 25 0 chr1 172634300 172634380 -24561052 + MIR SINE MIR 8 89 -173 2 1902 333 280 32 0 chr1 172634970 172635063 -24560369 - PB1D10 SINE Alu -11 106 11 2 1902 515 265 49 6 chr1 172634982 172635145 -24560287 - ID_B1 SINE B4 -52 172 3 2 1902 662 239 36 26 chr1 172636770 172636963 -24558469 - B3A SINE B2 -2 196 2 2 1902 796 205 69 78 chr1 172637324 172637541 -24557891 - B3 SINE B2 0 216 2 2 1902 33 80 0 0 chr1 172637541 172637616 -24557816 + AT_rich Low_complexity Low_complexity 1 75 0 2 1902 180 176 0 0 chr1 172638836 172638870 -24556562 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2 1902 395 219 98 66 chr1 172638870 172638992 -24556440 - B1_Mur2 SINE Alu -6 143 18 2 1902 1187 254 76 9 chr1 172640969 172641310 -24554122 - MTE2b LTR MaLR -8 371 8 2 1902 234 346 52 21 chr1 172641313 172641505 -24553927 + L1_Mur3 LINE L1 1670 1867 -4013 2 1902 963 284 92 7 chr1 172642023 172642448 -24552984 + L1MA4 LINE L1 3777 4237 -1906 2 1902 845 36 0 0 chr1 172642501 172642611 -24552821 - B1_Mm SINE Alu 0 147 38 2 1902 528 310 5 15 chr1 172642635 172642841 -24552591 + L1MA4 LINE L1 4279 4482 -1661 2 1902 3694 97 0 2 chr1 172642839 172643348 -24552084 - L1_Mus2 LINE L1 -1101 4782 4275 2 1902 8402 68 0 21 chr1 172643348 172643661 -24551771 + L1_Mus2 LINE L1 4760 5056 -1510 2 1902 291 75 0 0 chr1 172643661 172643701 -24551731 - B1_Mus2 SINE Alu -70 77 38 2 1902 8402 68 0 21 chr1 172643701 172645289 -24550143 + L1_Mus2 LINE L1 5057 6566 0 2 1902 1141 294 70 52 chr1 172645290 172645826 -24549606 + L1MA4 LINE L1 4474 5023 -1120 2 1902 1075 115 7 0 chr1 172645826 172645974 -24549458 + B1_Mur3 SINE Alu 1 149 0 2 1902 1141 294 70 52 chr1 172645974 172646096 -24549336 + L1MA4 LINE L1 5024 5144 -999 2 1902 540 287 9 8 chr1 172646188 172646366 -24549066 + L1MA4 LINE L1 5747 5928 -372 2 1902 617 182 251 35 chr1 172646922 172647093 -24548339 - B3 SINE B2 -8 208 1 2 1902 460 269 58 166 chr1 172647346 172647551 -24547881 - B3A SINE B2 -11 187 1 2 1902 465 271 9 0 chr1 172649551 172649658 -24545774 - PB1D7 SINE Alu -5 115 8 2 1902 183 114 0 0 chr1 172650145 172650180 -24545252 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 1902 292 161 0 51 chr1 172650746 172650805 -24544627 + ORR1A2 LTR MaLR 1 56 -271 2 1902 1828 53 4 0 chr1 172650799 172651042 -24544390 - MT2B2 LTR ERVL -340 244 1 2 1902 662 286 5 27 chr1 172651043 172651230 -24544202 - B3 SINE B2 -29 187 5 2 1902 21 36 0 0 chr1 172652285 172652313 -24543119 + AT_rich Low_complexity Low_complexity 1 28 0 2 1902 366 123 0 0 chr1 172652952 172653009 -24542423 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2 1902 735 203 22 22 chr1 172653009 172653145 -24542287 - B1_Mur1 SINE Alu -12 137 2 2 1902 227 182 21 64 chr1 172654435 172654482 -24540950 + L1M5 LINE L1 5632 5676 -564 2 1902 441 243 14 2 chr1 172654682 172654797 -24540635 + PB1D10 SINE Alu 2 116 -1 2 1902 290 73 8 0 chr1 172654941 172654984 -24540448 - L1_Mur3 LINE L1 -732 5439 5361 3 1902 6397 142 68 10 chr1 172654985 172656359 -24539073 + Lx5 LINE L1 5404 6885 -165 3 1902 236 229 0 14 chr1 172656381 172656452 -24538980 + Lx5 LINE L1 6981 7050 0 3 1902 753 206 78 54 chr1 172657546 172657751 -24537681 + B3 SINE B2 7 216 0 3 1902 282 335 72 5 chr1 172659505 172659700 -24535732 - L2a LINE L2 -5 3421 3214 3 1902 180 0 0 0 chr1 172660626 172660646 -24534786 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1902 268 253 25 12 chr1 172660654 172660734 -24534698 + GA-rich Low_complexity Low_complexity 3 83 0 3 1902 330 314 86 56 chr1 172661867 172662134 -24533298 - L2c LINE L2 -4 3383 3109 3 1902 689 231 7 7 chr1 172663028 172663176 -24532256 + B1_Mur1 SINE Alu 2 149 0 3 1902 186 288 34 0 chr1 172663289 172663348 -24532084 - MIRb SINE MIR -161 107 47 3 1902 852 228 58 15 chr1 172663401 172663606 -24531826 + B3 SINE B2 2 215 -1 3 1902 893 235 10 29 chr1 172663716 172663922 -24531510 + B3 SINE B2 1 202 -14 3 1902 334 287 32 11 chr1 172664729 172664824 -24530608 + B1F SINE Alu 27 123 -26 3 1902 331 326 77 53 chr1 172666086 172666446 -24528986 + MTEa LTR MaLR 1 379 0 3 1902 217 241 102 17 chr1 172666970 172667029 -24528403 + ID4_ SINE ID 4 67 -16 3 1902 663 48 0 0 chr1 172667115 172667198 -24528234 + (TCCA)n Simple_repeat Simple_repeat 3 85 0 3 1902 1508 17 6 0 chr1 172667200 172667379 -24528053 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1902 469 211 11 11 chr1 172667379 172667470 -24527962 - B1_Mur3 SINE Alu -56 93 3 3 1902 212 86 29 0 chr1 172668023 172668058 -24527374 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 1902 885 284 100 0 chr1 172668126 172668355 -24527077 - B4 SINE B4 -39 253 2 3 1902 361 296 0 0 chr1 172668472 172668553 -24526879 + PB1D10 SINE Alu 28 108 -9 3 1902 345 235 69 0 chr1 172669152 172669245 -24526187 - B1F SINE Alu -36 113 9 3 1902 324 211 0 0 chr1 172669637 172669708 -24525724 + (CATA)n Simple_repeat Simple_repeat 2 72 0 3 1902 192 297 103 51 chr1 172670539 172670656 -24524776 + MIRb SINE MIR 106 228 -40 3 1902 583 258 359 9 chr1 172672141 172672481 -24522951 + MLT1F1 LTR MaLR 88 567 -2 3 1902 419 312 118 50 chr1 172672641 172673100 -24522332 - Lx8 LINE L1 -9 7464 6975 3 1902 189 302 81 0 chr1 172673158 172673244 -24522188 + L2 LINE L2 2830 2922 -497 3 1902 481 295 14 7 chr1 172673317 172673457 -24521975 + MTEb LTR MaLR 239 379 0 3 1902 516 246 115 7 chr1 172673576 172673715 -24521717 - RSINE1 SINE B4 -10 155 2 3 1902 822 169 13 60 chr1 172674167 172674318 -24521114 + B1_Mur4 SINE Alu 1 144 -6 3 1902 213 94 0 0 chr1 172674319 172674351 -24521081 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 1902 692 200 27 27 chr1 172674500 172674649 -24520783 + B1_Mur2 SINE Alu 1 149 0 3 1902 246 349 23 31 chr1 172674876 172675006 -24520426 + L3 LINE CR1 4353 4481 -8 3 1902 354 45 0 0 chr1 172675338 172675382 -24520050 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1902 1193 54 0 0 chr1 172675414 172675562 -24519870 + B1_Mus1 SINE Alu 1 148 0 3 1902 240 235 0 19 chr1 172676793 172676845 -24518587 - RSINE1 SINE B4 -33 132 82 3 1902 241 204 0 53 chr1 172676928 172676985 -24518447 + B3A SINE B2 88 141 -57 3 1902 26 0 0 0 chr1 172677005 172677031 -24518401 + AT_rich Low_complexity Low_complexity 1 26 0 3 1902 28 0 0 0 chr1 172677077 172677105 -24518327 + AT_rich Low_complexity Low_complexity 1 28 0 3 1902 239 283 31 42 chr1 172677570 172677666 -24517766 + MIR3 SINE MIR 69 163 -45 3 1902 624 280 141 24 chr1 172677855 172678104 -24517328 + B4 SINE B4 15 292 0 3 1902 436 191 133 0 chr1 172679280 172679385 -24516047 - B1F2 SINE Alu -17 132 14 3 1902 435 307 71 13 chr1 172679385 172679435 -24515997 - ID_B1 SINE B4 -17 207 44 3 1902 21 0 0 0 chr1 172679508 172679529 -24515903 + AT_rich Low_complexity Low_complexity 1 21 0 3 1902 281 296 81 7 chr1 172680018 172680154 -24515278 + MLT1J LTR MaLR 241 386 -126 3 1902 787 171 47 0 chr1 172680349 172680478 -24514954 - B1_Mur1 SINE Alu -5 144 10 3 1902 305 288 0 126 chr1 172680364 172680499 -24514933 - MT2B LTR ERVL -326 275 158 3 1902 288 317 29 118 chr1 172681408 172681554 -24513878 + Tigger13a DNA MER2_type 445 574 -197 3 1902 2006 81 3 34 chr1 172681554 172681847 -24513585 - L1_Mus2 LINE L1 0 6566 6283 3 1902 886 56 0 0 chr1 172681847 172681954 -24513478 - U6 snRNA snRNA 0 107 1 3 1902 288 317 29 118 chr1 172681954 172682010 -24513422 + Tigger13a DNA MER2_type 575 629 -142 3 1902 182 62 31 0 chr1 172682371 172682403 -24513029 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1902 237 65 0 0 chr1 172683410 172683441 -24511991 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1902 502 332 9 75 chr1 172683441 172683653 -24511779 + MTE2a LTR MaLR 4 201 -178 3 1902 300 244 227 13 chr1 172684064 172684218 -24511214 - L1MA4 LINE L1 -372 5928 5742 3 1902 378 276 77 5 chr1 172684238 172684460 -24510972 - L1M4 LINE L1 -818 5328 5091 3 1902 384 22 0 0 chr1 172685260 172685305 -24510127 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1902 710 206 0 49 chr1 172685305 172685448 -24509984 - B1_Mur1 SINE Alu -11 138 3 3 1902 441 0 0 0 chr1 172686330 172686379 -24509053 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1902 230 294 128 21 chr1 172686413 172686507 -24508925 + B4A SINE B4 114 217 -75 3 1902 233 86 69 0 chr1 172686564 172686622 -24508810 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1902 25 0 0 0 chr1 172686697 172686722 -24508710 + AT_rich Low_complexity Low_complexity 1 25 0 3 1902 1237 48 0 0 chr1 172686814 172686961 -24508471 - B1_Mus2 SINE Alu 0 147 1 3 1902 313 247 161 0 chr1 172687069 172687150 -24508282 + B4A SINE B4 1 94 -198 3 1902 201 138 0 0 chr1 172687848 172687877 -24507555 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1902 311 258 110 24 chr1 172687927 172688054 -24507378 - B1_Mm SINE Alu 0 147 10 3 1902 1049 30 97 0 chr1 172688268 172688402 -24507030 - B1_Mm SINE Alu 0 147 1 3 1902 1241 105 0 32 chr1 172689440 172689627 -24505805 + B2_Mm2 SINE B2 1 181 -14 3 1902 309 366 146 11 chr1 172689750 172689935 -24505497 + L4 LINE RTE 1115 1324 -705 3 1902 1777 178 37 3 chr1 172690089 172690411 -24505021 + Lx6 LINE L1 7124 7456 -4 3 1902 608 235 73 24 chr1 172690425 172690630 -24504802 + L1M2 LINE L1 4559 4773 -1370 3 1902 412 312 46 23 chr1 172690683 172690857 -24504575 + RMER5 LTR ERV1 40 217 -317 3 1902 884 200 9 121 chr1 172690862 172691104 -24504328 + MT2A LTR ERVL 1 333 -160 3 1902 306 194 0 0 chr1 172691123 172691185 -24504247 + CT-rich Low_complexity Low_complexity 3 64 0 3 1902 928 156 0 7 chr1 172691192 172691347 -24504085 - B2_Mm2 SINE B2 -41 154 1 3 1902 709 221 141 66 chr1 172691347 172691585 -24503847 + MT2A LTR ERVL 346 601 0 3 1902 870 248 102 18 chr1 172691585 172691865 -24503567 + RMER5 LTR ERV1 231 534 0 3 1902 1180 284 85 65 chr1 172691868 172692844 -24502588 + L1M2 LINE L1 4718 5713 -134 3 1902 491 151 108 0 chr1 172692848 172692941 -24502491 + B1_Mur4 SINE Alu 48 150 0 3 1902 476 210 147 10 chr1 172693327 172693524 -24501908 - MER33 DNA MER1_type -43 281 58 3 1902 2475 118 72 25 chr1 172693915 172694360 -24501072 - RMER4A LTR ERVK 0 466 1 3 1902 685 249 16 33 chr1 172694361 172694544 -24500888 - B3A SINE B2 -17 181 2 3 1902 209 208 0 0 chr1 172695266 172695314 -24500118 + A-rich Low_complexity Low_complexity 1 48 0 3 1902 1922 127 44 79 chr1 172695347 172695714 -24499718 - ORR1B1 LTR MaLR 0 394 41 3 1902 501 147 10 0 chr1 172696328 172696430 -24499002 + Lx LINE L1 6551 6653 -1 3 1902 257 286 0 154 chr1 172697014 172697105 -24498327 + RSINE1 SINE B4 89 165 0 3 1902 585 281 7 14 chr1 172697157 172697298 -24498134 + B1_Mur1 SINE Alu 3 142 -7 3 1902 273 325 0 0 chr1 172698443 172698520 -24496912 + RSINE1 SINE B4 3 79 -86 3 1902 32 57 0 0 chr1 172698542 172698595 -24496837 + AT_rich Low_complexity Low_complexity 1 53 0 3 1902 7079 151 67 3 chr1 172698614 172700137 -24495295 + Lx5 LINE L1 5403 7047 -3 3 1902 184 260 229 0 chr1 172702224 172702320 -24493112 + L2a LINE L2 3206 3323 -103 3 1902 964 234 83 4 chr1 172703073 172703339 -24492093 - B4 SINE B4 -3 289 3 3 1902 468 297 46 114 chr1 172704076 172704251 -24491181 + RSINE1 SINE B4 3 165 0 3 1902 801 97 25 89 chr1 172704390 172704548 -24490884 - B1_Mur3 SINE Alu -1 148 1 3 1902 256 238 0 12 chr1 172705705 172705786 -24489646 + Lx7 LINE L1 7600 7679 -17 3 1902 859 264 18 63 chr1 172705795 172705837 -24489595 + B4 SINE B4 81 122 -170 3 1902 191 36 36 0 chr1 172705837 172705865 -24489567 + (GGGTG)n Simple_repeat Simple_repeat 4 32 0 3 1902 859 264 18 63 chr1 172705865 172706044 -24489388 + B4 SINE B4 123 292 0 3 1902 256 382 69 7 chr1 172706178 172706323 -24489109 - L2b LINE L2 0 3375 3222 3 1902 25 0 0 0 chr1 172706815 172706840 -24488592 + AT_rich Low_complexity Low_complexity 1 25 0 3 1902 1004 133 0 0 chr1 172706841 172706984 -24488448 - B1_Mur4 SINE Alu -6 144 2 3 1902 608 183 164 27 chr1 172707923 172708069 -24487363 + B2_Mm2 SINE B2 2 167 -28 3 1902 750 84 0 0 chr1 172708069 172708176 -24487256 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 1902 316 264 140 9 chr1 172708176 172708283 -24487149 + MIR SINE MIR 29 149 -113 3 1902 369 155 298 0 chr1 172708943 172709027 -24486405 - PB1D9 SINE Alu -7 113 5 3 1902 412 293 29 50 chr1 172709033 172709173 -24486259 - B1F SINE Alu -3 146 10 3 1902 1097 44 14 7 chr1 172709444 172709582 -24485850 - B1_Mm SINE Alu -8 139 1 4 1902 1102 78 0 0 chr1 172710082 172710223 -24485209 + B1_Mus1 SINE Alu 1 141 -7 4 1902 748 22 0 73 chr1 172710227 172710377 -24485055 + (GAGAA)n Simple_repeat Simple_repeat 5 143 0 4 1902 533 266 82 25 chr1 172711878 172712036 -24483396 - B4A SINE B4 -1 291 125 4 1902 5856 113 27 5 chr1 172713462 172714344 -24481088 + Lx2B LINE L1 6096 6997 -3 4 1902 1125 73 0 0 chr1 172714420 172714585 -24480847 + (TG)n Simple_repeat Simple_repeat 1 165 0 4 1902 2144 56 0 3 chr1 172715315 172715604 -24479828 - L1_Mus2 LINE L1 -541 6025 5738 4 1902 3710 90 31 11 chr1 172715604 172716145 -24479287 + L1_Mus2 LINE L1 6014 6565 -1 4 1902 31 0 0 0 chr1 172716225 172716256 -24479176 + AT_rich Low_complexity Low_complexity 1 31 0 4 1902 662 197 112 15 chr1 172716266 172716400 -24479032 + B3A SINE B2 4 150 -48 4 1902 822 253 23 12 chr1 172716413 172716578 -24478854 + ORR1D2 LTR MaLR 7 175 -195 4 1902 227 29 0 54 chr1 172716578 172716615 -24478817 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1902 822 246 90 1087 chr1 172716615 172716650 -24478782 + ORR1D2 LTR MaLR 176 218 -166 4 1902 281 183 33 0 chr1 172716662 172716722 -24478710 + ORR1D2 LTR MaLR 309 370 0 4 1902 258 291 72 123 chr1 172718230 172718465 -24476967 + B4 SINE B4 10 232 -60 4 1902 846 245 30 73 chr1 172719740 172719860 -24475572 + MER44B DNA MER2_type 204 312 -238 4 1902 1182 68 0 0 chr1 172719860 172720006 -24475426 + B1_Mus1 SINE Alu 1 146 -2 4 1902 846 245 30 73 chr1 172720006 172720185 -24475247 + MER44B DNA MER2_type 313 489 -61 4 1902 723 176 8 8 chr1 172720238 172720364 -24475068 + B1_Mur1 SINE Alu 23 148 -1 4 1902 603 0 0 0 chr1 172720475 172720542 -24474890 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1902 1383 89 11 0 chr1 172720694 172720884 -24474548 + B2_Mm1t SINE B2 2 193 0 4 1902 317 374 10 10 chr1 172720885 172720985 -24474447 - PB1D10 SINE Alu -17 100 1 4 1902 335 340 65 32 chr1 172721766 172721921 -24473511 + LTR33B LTR ERVL 8 167 -336 4 1902 260 72 0 45 chr1 172722220 172722264 -24473168 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 4 1902 369 255 9 67 chr1 172722281 172722386 -24473046 - B1F SINE Alu -11 138 40 4 1902 600 210 28 48 chr1 172722403 172722548 -24472884 - B1_Mur1 SINE Alu 0 149 8 4 1902 387 351 142 10 chr1 172722986 172723400 -24472032 + L2 LINE L2 2338 2806 -613 4 1902 253 213 0 0 chr1 172723420 172723467 -24471965 - B1F SINE Alu -8 141 95 4 1902 291 309 149 38 chr1 172723509 172723771 -24471661 + L2 LINE L2 2789 3079 -340 4 1902 24 0 0 0 chr1 172724478 172724502 -24470930 + AT_rich Low_complexity Low_complexity 1 24 0 4 1902 183 284 146 11 chr1 172725689 172725778 -24469654 - L2c LINE L2 -1 3386 3286 4 1902 348 192 14 0 chr1 172726423 172726496 -24468936 + PB1D10 SINE Alu 34 107 -10 4 1902 761 58 10 0 chr1 172726593 172726696 -24468736 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 4 1902 313 250 0 71 chr1 172727659 172727758 -24467674 + L1M2 LINE L1 3432 3523 -2617 4 1902 970 300 70 0 chr1 172727913 172728226 -24467206 + L1M2 LINE L1 3559 3893 -2250 4 1902 598 271 68 51 chr1 172728232 172728524 -24466908 + L1MA6 LINE L1 5998 6294 -6 4 1902 27 0 0 0 chr1 172728550 172728577 -24466855 + AT_rich Low_complexity Low_complexity 1 27 0 4 1902 23 68 0 0 chr1 172728672 172728716 -24466716 + AT_rich Low_complexity Low_complexity 1 44 0 4 1902 264 185 0 0 chr1 172728719 172728773 -24466659 + (ATG)n Simple_repeat Simple_repeat 1 54 0 4 1902 225 108 0 0 chr1 172728932 172728969 -24466463 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1902 1212 42 7 0 chr1 172728982 172729126 -24466306 - B1_Mus1 SINE Alu -1 147 3 4 1902 251 243 60 78 chr1 172730209 172730325 -24465107 + ORR1E LTR MaLR 77 190 -169 4 1902 794 159 25 25 chr1 172731964 172732125 -24463307 + B2_Mm2 SINE B2 3 163 -32 4 1902 180 0 0 0 chr1 172732125 172732145 -24463287 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1902 183 364 0 0 chr1 172732908 172732985 -24462447 + MER5A DNA MER1_type 1 77 -112 4 1902 904 150 0 20 chr1 172733715 172733865 -24461567 + B1_Mus2 SINE Alu 1 147 0 4 1902 24 32 0 0 chr1 172733865 172733896 -24461536 + AT_rich Low_complexity Low_complexity 1 31 0 4 1902 815 224 24 19 chr1 172734666 172734871 -24460561 - B3 SINE B2 -10 206 1 4 1902 252 352 190 5 chr1 172735439 172735639 -24459793 + MIRc SINE MIR 7 243 -25 4 1902 301 245 96 48 chr1 172735656 172735802 -24459630 + L2a LINE L2 2735 2887 -532 4 1902 223 331 59 15 chr1 172735884 172736019 -24459413 + L2a LINE L2 2995 3135 -291 4 1902 23 0 0 0 chr1 172736240 172736263 -24459169 + AT_rich Low_complexity Low_complexity 1 23 0 4 1902 22 35 0 0 chr1 172736727 172736756 -24458676 + AT_rich Low_complexity Low_complexity 1 29 0 4 1902 1619 36 0 20 chr1 172738717 172738913 -24456519 - B2_Mm1a SINE B2 -1 192 1 4 1902 322 246 276 25 chr1 172738920 172739116 -24456316 - B4A SINE B4 -45 247 3 4 1902 452 248 119 0 chr1 172739291 172739400 -24456032 - ID_B1 SINE B4 -6 218 97 4 1902 365 276 31 49 chr1 172739461 172739605 -24455827 - B1F SINE Alu -2 125 1 4 1902 865 225 118 0 chr1 172740230 172740417 -24455015 - B3 SINE B2 -6 210 2 4 1902 528 16 0 0 chr1 172740451 172740512 -24454920 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1902 475 368 45 71 chr1 172741349 172741797 -24453635 + MER21B LTR ERV1 1 436 -427 4 1902 1156 68 0 20 chr1 172741962 172742113 -24453319 + B1_Mus1 SINE Alu 1 148 0 4 1902 192 77 0 0 chr1 172742115 172742141 -24453291 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1902 1074 106 0 29 chr1 172743464 172743621 -24451811 + B2_Mm2 SINE B2 2 158 -37 4 1902 180 0 0 0 chr1 172743621 172743641 -24451791 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1902 1074 106 0 29 chr1 172743641 172743658 -24451774 + B2_Mm2 SINE B2 159 171 -24 4 1902 380 111 0 16 chr1 172744242 172744306 -24451126 + (GAAAA)n Simple_repeat Simple_repeat 2 64 0 4 1902 32 57 0 0 chr1 172744381 172744434 -24450998 + AT_rich Low_complexity Low_complexity 1 53 0 4 1902 1226 48 0 7 chr1 172744701 172744849 -24450583 - B1_Mm SINE Alu 0 147 1 4 1902 2094 33 0 0 chr1 172744899 172745142 -24450290 - L1Md_F2 LINE L1 -12 6570 6328 4 1902 190 333 35 0 chr1 172745147 172745234 -24450198 + L2c LINE L2 3035 3124 -263 4 1902 232 156 0 43 chr1 172746034 172746049 -24449383 + A-rich Low_complexity Low_complexity 4 18 0 4 1902 1327 67 78 0 chr1 172746049 172746229 -24449203 + B2_Mm2 SINE B2 2 195 0 4 1902 232 156 0 43 chr1 172746229 172746260 -24449172 + A-rich Low_complexity Low_complexity 19 48 0 4 1902 707 104 0 0 chr1 172746641 172746737 -24448695 + Lx4A LINE L1 6630 6725 -333 4 1902 2215 150 22 40 chr1 172746737 172747140 -24448292 + Lx4A LINE L1 6662 7057 -1 4 1902 22 0 0 0 chr1 172747140 172747162 -24448270 + AT_rich Low_complexity Low_complexity 1 22 0 4 1902 3053 304 78 12 chr1 172747477 172748680 -24446752 + Lx8 LINE L1 6191 7473 0 4 1902 315 215 12 12 chr1 172748753 172748833 -24446599 + B1_Mur4 SINE Alu 71 150 0 4 1902 390 245 49 39 chr1 172748892 172748936 -24446496 + ID_B1 SINE B4 50 217 -7 4 1902 647 177 40 0 chr1 172748936 172749060 -24446372 + B1_Mur2 SINE Alu 14 142 -7 4 1902 267 333 0 13 chr1 172749840 172749919 -24445513 + PB1D7 SINE Alu 7 84 -36 4 1902 560 274 12 60 chr1 172750095 172750344 -24445088 + RLTR26 LTR ERVK 168 404 -238 4 1902 241 283 0 16 chr1 172750645 172750706 -24444726 + ID2 SINE ID 2 61 -22 4 1902 237 248 46 65 chr1 172750706 172750753 -24444679 + RSINE1 SINE B4 3 108 -57 4 1902 276 245 133 29 chr1 172751124 172751229 -24444203 + PB1D10 SINE Alu 1 116 -1 4 1902 1961 192 21 41 chr1 172752165 172752584 -24442848 - MTD LTR MaLR -8 411 1 4 1903 318 87 0 0 chr1 172752907 172752953 -24442479 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 4 1903 565 258 30 0 chr1 172753767 172753899 -24441533 + B1F2 SINE Alu 14 149 0 4 1903 308 243 49 65 chr1 172754745 172754868 -24440564 - RSINE1 SINE B4 -42 123 3 4 1903 287 236 56 0 chr1 172754876 172754948 -24440484 + L1MB7 LINE L1 6054 6129 -55 4 1903 216 0 0 0 chr1 172754950 172754974 -24440458 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1903 333 268 0 0 chr1 172754978 172755056 -24440376 + ID4_ SINE ID 9 86 -66 4 1903 425 250 10 0 chr1 172755162 172755258 -24440174 + ID_B1 SINE B4 108 204 -20 4 1903 696 12 0 0 chr1 172755258 172755339 -24440093 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 4 1903 1198 75 6 11 chr1 172755339 172755514 -24439918 + (GGGA)n Simple_repeat Simple_repeat 2 176 0 4 1903 1038 78 0 0 chr1 172755527 172755668 -24439764 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 4 1903 855 108 0 0 chr1 172755859 172755988 -24439444 + (TC)n Simple_repeat Simple_repeat 2 130 0 4 1903 242 293 101 57 chr1 172756027 172756186 -24439246 + RMER17C LTR ERVK 196 361 -49 4 1903 357 241 55 18 chr1 172756192 172756302 -24439130 + L1MC LINE L1 5586 5699 -2183 4 1903 1197 109 60 0 chr1 172756377 172756561 -24438871 - B2_Mm2 SINE B2 0 195 1 4 1903 776 10 0 20 chr1 172756567 172756652 -24438780 + (CTG)n Simple_repeat Simple_repeat 1 85 0 4 1903 1432 17 6 6 chr1 172756652 172756828 -24438604 + (TTC)n Simple_repeat Simple_repeat 3 178 0 4 1903 776 10 0 20 chr1 172756828 172756840 -24438592 + (CTG)n Simple_repeat Simple_repeat 2 12 0 4 1903 932 238 15 10 chr1 172756868 172757072 -24438360 - B3 SINE B2 0 216 12 4 1903 664 236 14 0 chr1 172757463 172757607 -24437825 + B1_Mur1 SINE Alu 1 146 -3 4 1903 360 359 26 43 chr1 172758202 172758432 -24437000 + LTR40c LTR ERVL 3 228 -237 4 1903 967 104 134 6 chr1 172758525 172758689 -24436743 + B2_Mm2 SINE B2 4 188 -7 4 1903 208 349 0 0 chr1 172758869 172758935 -24436497 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1903 2035 102 142 75 chr1 172760074 172760434 -24434998 + ORR1C2 LTR MaLR 1 384 0 5 1903 182 345 56 6 chr1 172760937 172761115 -24434317 - L3 LINE CR1 -227 4262 4076 5 1903 345 225 28 0 chr1 172761129 172761200 -24434232 - ID4_ SINE ID -9 74 2 5 1903 3509 30 0 0 chr1 172761984 172762380 -24433052 + MTA_Mm LTR MaLR 1 396 0 5 1903 959 137 27 0 chr1 172762478 172762624 -24432808 - B1_Mur4 SINE Alu 0 150 1 5 1903 519 17 0 0 chr1 172762639 172762699 -24432733 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 5 1903 726 117 10 0 chr1 172762899 172763002 -24432430 - U6 snRNA snRNA -3 104 1 5 1903 836 140 14 34 chr1 172763971 172764119 -24431313 + B1_Mur2 SINE Alu 4 148 -1 5 1903 912 44 0 0 chr1 172764519 172764632 -24430800 + (CA)n Simple_repeat Simple_repeat 1 113 0 5 1903 302 304 78 0 chr1 172765374 172765476 -24429956 + PB1 SINE Alu 1 110 -17 5 1903 212 0 36 0 chr1 172765493 172765521 -24429911 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1903 529 306 7 0 chr1 172765529 172765676 -24429756 + B3A SINE B2 3 150 -48 5 1903 261 0 0 0 chr1 172765691 172765720 -24429712 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1903 219 303 15 15 chr1 172765739 172765806 -24429626 + PB1D10 SINE Alu 4 70 -47 5 1903 290 145 81 0 chr1 172765846 172765908 -24429524 + ID4_ SINE ID 7 73 -10 5 1903 5273 103 33 4 chr1 172766743 172767510 -24427922 + Lx3A LINE L1 6190 6978 -3 5 1903 286 255 0 3 chr1 172767876 172767942 -24427490 - ID4_ SINE ID -73 79 16 5 1903 471 198 89 16 chr1 172767967 172768090 -24427342 - B1F SINE Alu -14 135 4 5 1903 382 250 21 35 chr1 172768092 172768233 -24427199 - Charlie23a DNA MER1_type -27 312 174 5 1903 826 252 126 0 chr1 172768450 172768704 -24426728 - B4A SINE B4 -3 289 4 5 1903 1003 110 7 20 chr1 172768955 172769103 -24426329 + B1_Mus2 SINE Alu 2 147 0 5 1903 564 15 0 0 chr1 172770167 172770232 -24425200 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1903 618 233 23 0 chr1 172770333 172770462 -24424970 + B1_Mur1 SINE Alu 12 143 -6 5 1903 317 159 16 0 chr1 172770482 172770545 -24424887 + GA-rich Low_complexity Low_complexity 3 66 0 5 1903 33 0 0 0 chr1 172771021 172771054 -24424378 + AT_rich Low_complexity Low_complexity 1 33 0 5 1903 649 218 7 22 chr1 172771551 172771687 -24423745 + B3 SINE B2 83 216 0 5 1903 715 214 157 16 chr1 172772665 172772850 -24422582 + B3 SINE B2 1 211 -5 5 1903 1098 88 0 7 chr1 172772989 172773138 -24422294 + B1_Mus1 SINE Alu 1 148 0 5 1903 240 111 0 0 chr1 172773139 172773184 -24422248 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1903 510 234 19 0 chr1 172774111 172774218 -24421214 + PB1D10 SINE Alu 1 109 -8 5 1903 285 306 43 7 chr1 172774671 172774809 -24420623 + L1MC4 LINE L1 6936 7078 -964 5 1903 249 220 60 0 chr1 172774878 172774928 -24420504 + RSINE1 SINE B4 56 108 -57 5 1903 22 0 0 0 chr1 172774992 172775014 -24420418 + AT_rich Low_complexity Low_complexity 1 22 0 5 1903 1268 34 0 0 chr1 172775014 172775161 -24420271 - B1_Mm SINE Alu 0 147 1 5 1903 312 286 63 24 chr1 172775166 172775312 -24420120 + L1MC4 LINE L1 7227 7397 -645 5 1903 588 283 7 7 chr1 172775366 172775505 -24419927 + ID_B1 SINE B4 86 224 0 5 1903 610 196 7 83 chr1 172775516 172775661 -24419771 + B1_Mur3 SINE Alu 9 142 -7 5 1903 273 75 0 0 chr1 172775664 172775704 -24419728 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1903 349 221 263 17 chr1 172775723 172775898 -24419534 + L1MC4 LINE L1 7434 7651 -391 5 1903 505 268 133 105 chr1 172775976 172776491 -24418941 + RMER4B LTR ERVK 17 611 0 5 1903 448 271 90 0 chr1 172776491 172776646 -24418786 + L1MC4 LINE L1 7732 7900 -142 5 1903 1149 76 14 0 chr1 172776724 172776869 -24418563 + B1_Mus1 SINE Alu 1 147 -1 5 1903 282 273 23 0 chr1 172776944 172777032 -24418400 + GA-rich Low_complexity Low_complexity 6 95 0 5 1903 22 0 0 0 chr1 172777064 172777086 -24418346 + AT_rich Low_complexity Low_complexity 1 22 0 5 1903 659 252 8 0 chr1 172777127 172777258 -24418174 + B1_Mur1 SINE Alu 2 133 -16 5 1903 648 0 0 0 chr1 172777260 172777332 -24418100 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 5 1903 1041 144 0 0 chr1 172777332 172777506 -24417926 + (GGGA)n Simple_repeat Simple_repeat 3 176 0 5 1903 945 254 98 11 chr1 172777653 172778000 -24417432 + MTE2b LTR MaLR 1 355 -4 5 1903 248 304 76 34 chr1 172778483 172778602 -24416830 + RSINE1 SINE B4 1 124 -41 5 1903 378 0 0 0 chr1 172778604 172778646 -24416786 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1903 250 295 130 23 chr1 172778739 172778916 -24416516 + MamGypLTR1a LTR Gypsy 19 214 -570 5 1903 324 260 0 47 chr1 172779807 172779936 -24415496 - BC1_Mm scRNA scRNA -23 129 7 5 1903 280 216 143 33 chr1 172779957 172780048 -24415384 - MLT1G3 LTR MaLR -5 590 490 5 1903 233 277 12 12 chr1 172780408 172780485 -24414947 + B4A SINE B4 165 241 -51 5 1903 408 223 35 26 chr1 172780485 172780600 -24414832 + B3 SINE B2 1 116 -100 5 1903 225 196 0 0 chr1 172780629 172780685 -24414747 + T-rich Low_complexity Low_complexity 1 56 0 5 1903 2483 132 138 2 chr1 172781211 172781691 -24413741 - RMER4B LTR ERVK -24 561 17 5 1903 384 238 40 0 chr1 172781699 172781800 -24413632 + B3 SINE B2 112 216 0 5 1903 942 46 7 7 chr1 172781803 172781955 -24413477 + RMER17B LTR ERVK 312 463 -495 5 1903 188 100 25 0 chr1 172781955 172781995 -24413437 + (TAAAAA)n Simple_repeat Simple_repeat 3 43 0 5 1903 186 227 0 0 chr1 172782022 172782066 -24413366 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 5 1903 1093 185 20 0 chr1 172782379 172782579 -24412853 + B3 SINE B2 2 205 -11 5 1903 31 0 0 0 chr1 172782579 172782610 -24412822 + AT_rich Low_complexity Low_complexity 1 31 0 5 1903 263 333 54 0 chr1 172783969 172784039 -24411393 + B1F SINE Alu 15 89 -60 5 1903 2511 95 27 71 chr1 172784039 172784625 -24410807 + RMER17A LTR ERVK 1 734 -17 5 1903 224 218 0 35 chr1 172784674 172784731 -24410701 + PB1D9 SINE Alu 65 119 -1 5 1903 261 0 0 0 chr1 172784821 172784850 -24410582 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 5 1903 554 316 73 6 chr1 172785461 172785639 -24409793 + B4A SINE B4 46 235 -57 5 1903 442 252 62 87 chr1 172785645 172785911 -24409521 + RSINE1 SINE B4 6 292 0 5 1903 24 0 0 0 chr1 172785952 172785976 -24409456 + AT_rich Low_complexity Low_complexity 1 24 0 5 1903 1642 165 116 29 chr1 172786276 172786620 -24408812 + ORR1D1 LTR MaLR 1 374 0 5 1903 810 324 134 27 chr1 172786787 172787480 -24407952 + L2 LINE L2 1877 2643 -776 5 1903 348 279 53 20 chr1 172787808 172787958 -24407474 + L1MC4 LINE L1 6449 6603 -1279 5 1903 253 296 42 0 chr1 172787960 172787974 -24407458 + B4A SINE B4 72 88 -204 5 1903 531 234 36 7 chr1 172787974 172788112 -24407320 + B1F SINE Alu 3 144 -5 5 1903 228 267 83 65 chr1 172788129 172788237 -24407195 + L1MC4 LINE L1 6627 6736 -1146 5 1903 262 267 67 106 chr1 172788294 172788474 -24406958 + L1MC4 LINE L1 6767 6939 -1103 5 1903 507 303 156 56 chr1 172788529 172788927 -24406505 + L1MC4 LINE L1 6873 7314 -728 5 1903 1724 21 0 0 chr1 172788927 172789119 -24406313 + B2_Mm1a SINE B2 2 193 0 5 1903 507 303 161 59 chr1 172789119 172789386 -24406046 + L1MC4 LINE L1 7315 7633 -409 5 1903 233 320 0 102 chr1 172789767 172789875 -24405557 + PB1D10 SINE Alu 13 109 -8 5 1903 456 237 97 41 chr1 172790021 172790166 -24405266 + ID_B1 SINE B4 2 154 -70 5 1903 399 216 72 12 chr1 172790168 172790289 -24405143 + RSINE1 SINE B4 15 146 -19 5 1903 360 0 0 0 chr1 172790289 172790329 -24405103 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1903 399 225 88 26 chr1 172790329 172790345 -24405087 + RSINE1 SINE B4 147 162 -3 5 1903 22 70 0 0 chr1 172790355 172790398 -24405034 + AT_rich Low_complexity Low_complexity 1 43 0 5 1903 1235 28 0 0 chr1 172790406 172790548 -24404884 + B1_Mus2 SINE Alu 1 142 -5 5 1903 1209 197 9 5 chr1 172790575 172790789 -24404643 + B3 SINE B2 1 215 -1 5 1903 292 253 13 0 chr1 172790819 172790894 -24404538 + ID_B1 SINE B4 149 224 0 5 1903 265 243 0 54 chr1 172790894 172790906 -24404526 + B4A SINE B4 77 84 -208 5 1903 434 227 25 0 chr1 172790906 172791007 -24404425 + PB1D10 SINE Alu 1 103 -47 5 1903 237 229 131 12 chr1 172791056 172791140 -24404292 + ID_B1 SINE B4 96 189 -35 5 1903 180 0 0 0 chr1 172791852 172791872 -24403560 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1903 315 362 160 19 chr1 172792959 172793390 -24402042 - L2 LINE L2 -2522 897 406 5 1903 732 267 214 0 chr1 172793518 172793871 -24401561 + L1MC1 LINE L1 5366 5794 -650 5 1903 265 196 0 0 chr1 172794138 172794189 -24401243 + L1MC1 LINE L1 6048 6098 -235 5 1903 728 254 143 23 chr1 172794201 172794467 -24400965 + L1MC1 LINE L1 5801 6098 -235 5 1903 611 231 41 14 chr1 172794502 172794647 -24400785 + B1F SINE Alu 1 149 0 5 1903 231 167 0 0 chr1 172794647 172794689 -24400743 + A-rich Low_complexity Low_complexity 1 42 0 5 1903 1434 80 5 0 chr1 172794703 172794890 -24400542 - B2_Mm1t SINE B2 -4 189 2 5 1903 1703 161 118 24 chr1 172794922 172795305 -24400127 - MTD LTR MaLR -15 404 1 5 1903 226 258 40 40 chr1 172795306 172795407 -24400025 + L1MC3 LINE L1 7664 7764 -21 5 1903 240 293 0 26 chr1 172795435 172795512 -24399920 + PB1D10 SINE Alu 36 110 -7 5 1903 411 247 0 12 chr1 172795518 172795604 -24399828 + PB1D10 SINE Alu 6 90 -27 5 1903 369 312 84 11 chr1 172795625 172795803 -24399629 + MER58B DNA MER1_type 145 335 -6 5 1903 348 315 104 52 chr1 172796482 172796693 -24398739 + MIRb SINE MIR 3 224 -44 5 1903 405 39 0 0 chr1 172797376 172797427 -24398005 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1903 201 195 24 0 chr1 172798109 172798150 -24397282 + CT-rich Low_complexity Low_complexity 2 43 0 5 1903 256 293 20 29 chr1 172798919 172798958 -24396474 + (CACG)n Simple_repeat Simple_repeat 1 37 0 5 1903 362 86 35 0 chr1 172798958 172799016 -24396416 + (CATA)n Simple_repeat Simple_repeat 4 63 0 5 1903 256 293 20 29 chr1 172799016 172799078 -24396354 + (CACG)n Simple_repeat Simple_repeat 2 65 0 5 1903 31 0 0 0 chr1 172799124 172799155 -24396277 + AT_rich Low_complexity Low_complexity 1 31 0 6 1903 844 64 160 0 chr1 172799155 172799280 -24396152 - B1_Mus1 SINE Alu -2 146 2 6 1903 749 222 39 17 chr1 172800295 172800474 -24394958 + B3 SINE B2 24 206 -10 6 1903 239 206 95 0 chr1 172800709 172800772 -24394660 + MER115 DNA Tip100 507 575 -118 6 1903 1615 32 0 0 chr1 172801200 172801385 -24394047 - B2_Mm1a SINE B2 -7 186 2 6 1903 302 228 85 16 chr1 172801632 172801761 -24393671 - ID_B1 SINE B4 -5 219 82 6 1903 186 243 56 28 chr1 172801834 172801906 -24393526 + L2a LINE L2 3291 3364 -62 6 1903 858 113 191 19 chr1 172802237 172802399 -24393033 - B2_Mm2 SINE B2 -4 191 2 6 1903 1031 122 0 7 chr1 172802536 172802685 -24392747 - B1_Mus1 SINE Alu 0 148 1 6 1903 631 177 22 58 chr1 172802838 172802948 -24392484 + B1_Mus2 SINE Alu 2 112 -35 6 1903 3546 20 2 0 chr1 172802948 172803343 -24392089 - MTA_Mm LTR MaLR 0 396 1 6 1903 631 177 22 58 chr1 172803343 172803370 -24392062 + B1_Mus2 SINE Alu 113 134 -13 6 1903 195 100 0 0 chr1 172803370 172803400 -24392032 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 6 1903 198 0 0 0 chr1 172803787 172803809 -24391623 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1903 363 271 194 16 chr1 172803814 172804005 -24391427 + RMER15 LTR ERVL 336 560 -15 6 1903 239 271 24 0 chr1 172804216 172804293 -24391139 + BC1_Mm scRNA scRNA 1 80 -3 6 1903 491 233 109 29 chr1 172805271 172805408 -24390024 + RSINE1 SINE B4 3 150 -15 6 1903 250 280 13 39 chr1 172805492 172805510 -24389922 + ID_B1 SINE B4 130 202 -19 6 1903 254 263 0 0 chr1 172805510 172805567 -24389865 + B1F SINE Alu 67 123 -26 6 1903 347 253 46 0 chr1 172805763 172805850 -24389582 + MTD LTR MaLR 8 98 -321 6 1903 404 234 157 32 chr1 172805917 172806133 -24389299 + RLTR15 LTR ERVK 48 290 -69 6 1903 1187 178 84 39 chr1 172806188 172806474 -24388958 + MTD LTR MaLR 109 407 -12 6 1903 1021 47 62 0 chr1 172806787 172806916 -24388516 + B1_Mm SINE Alu 2 138 -9 6 1903 275 0 0 28 chr1 172806916 172806952 -24388480 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1903 636 185 0 32 chr1 172806967 172807090 -24388342 - B1_Mur1 SINE Alu -26 123 5 6 1903 395 218 120 60 chr1 172807262 172807379 -24388053 + PB1D10 SINE Alu 2 127 0 6 1903 382 267 38 9 chr1 172807389 172807495 -24387937 + PB1D10 SINE Alu 2 110 -7 6 1903 220 0 86 0 chr1 172807564 172807599 -24387833 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1903 1178 72 6 12 chr1 172807627 172807786 -24387646 + B2_Mm2 SINE B2 1 160 -35 6 1903 639 0 0 0 chr1 172807786 172807857 -24387575 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 1903 1350 57 29 0 chr1 172808253 172808428 -24387004 + B2_Mm2 SINE B2 2 181 -14 6 1903 320 92 406 0 chr1 172808475 172808571 -24386861 + B2_Mm2 SINE B2 47 181 -14 6 1903 189 94 0 0 chr1 172809047 172809079 -24386353 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1903 1148 75 0 0 chr1 172809079 172809226 -24386206 - B1_Mus2 SINE Alu 0 147 1 6 1903 470 258 37 43 chr1 172809336 172809498 -24385934 + RSINE1 SINE B4 4 164 -1 6 1903 612 253 115 0 chr1 172809563 172809745 -24385687 - ID_B1 SINE B4 -20 204 2 6 1903 220 172 35 0 chr1 172810944 172811002 -24384430 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1903 1021 102 7 0 chr1 172811217 172811354 -24384078 + B1_Mur3 SINE Alu 2 139 -10 6 1903 561 30 0 0 chr1 172812707 172812774 -24382658 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1903 354 247 41 12 chr1 172812775 172812947 -24382485 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 1903 186 284 0 15 chr1 172813407 172813475 -24381957 + L2 LINE L2 2215 2281 -1138 6 1903 307 203 44 35 chr1 172813541 172813647 -24381785 + PB1D10 SINE Alu 12 117 0 6 1903 180 184 0 0 chr1 172813940 172813989 -24381443 + T-rich Low_complexity Low_complexity 1 49 0 6 1903 1088 35 13 46 chr1 172813996 172814147 -24381285 - B1_Mm SINE Alu 0 147 2 6 1903 2832 54 84 0 chr1 172814207 172814576 -24380856 - MTB LTR MaLR 0 400 1 6 1903 575 157 26 9 chr1 172814670 172814786 -24380646 + B1_Mur1 SINE Alu 32 149 0 6 1903 263 297 0 0 chr1 172814941 172815005 -24380427 + (CAGA)n Simple_repeat Simple_repeat 4 67 0 6 1903 1956 121 114 31 chr1 172815782 172816141 -24379291 + Lx7 LINE L1 5491 5879 -1 6 1903 228 197 29 43 chr1 172816248 172816317 -24379115 + GA-rich Low_complexity Low_complexity 2 69 0 6 1903 1133 143 34 29 chr1 172816331 172816540 -24378892 - RLTR22_Mur LTR ERVK -39 1809 1600 6 1903 5307 77 32 38 chr1 172816782 172817636 -24377796 - RLTR22_Mus LTR ERVK -959 849 1 6 1903 741 23 0 0 chr1 172817648 172817735 -24377697 + (GA)n Simple_repeat Simple_repeat 1 87 0 6 1903 3933 196 41 10 chr1 172817893 172818668 -24376764 + Lx7 LINE L1 5915 6713 -983 6 1903 2079 103 16 79 chr1 172818676 172819054 -24376378 + ORR1B1 LTR MaLR 41 394 0 6 1903 2386 167 60 17 chr1 172819057 172819096 -24376336 + Lx7 LINE L1 6714 6755 -941 6 1903 685 22 21 21 chr1 172819096 172819191 -24376241 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 6 1903 2386 167 60 17 chr1 172819191 172819614 -24375818 + Lx7 LINE L1 6756 7196 -500 6 1903 267 210 10 20 chr1 172819861 172819963 -24375469 + CT-rich Low_complexity Low_complexity 1 101 0 6 1903 710 217 7 0 chr1 172820182 172820325 -24375107 + Lx7 LINE L1 7193 7336 -360 6 1903 261 0 0 0 chr1 172820878 172820907 -24374525 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 6 1903 783 106 138 0 chr1 172820907 172821030 -24374402 - B1_Mus1 SINE Alu -8 140 1 6 1903 707 150 32 174 chr1 172821090 172821247 -24374185 + Lx7 LINE L1 7425 7560 -136 6 1903 1183 61 0 0 chr1 172821247 172821394 -24374038 - B1_Mus2 SINE Alu 0 147 1 6 1903 707 150 32 174 chr1 172821394 172821406 -24374026 + Lx7 LINE L1 7561 7567 -129 6 1903 195 69 0 0 chr1 172821406 172821435 -24373997 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1903 707 194 146 157 chr1 172821435 172821534 -24373898 + Lx7 LINE L1 7568 7611 -85 6 1903 513 0 0 0 chr1 172822403 172822460 -24372972 + (TATTG)n Simple_repeat Simple_repeat 2 58 0 6 1903 437 305 32 13 chr1 172823015 172823171 -24372261 - MER90a LTR ERV1 -164 450 292 6 1903 239 268 0 14 chr1 172823445 172823517 -24371915 + RMER10A LTR ERVL 344 414 -28 6 1903 290 185 138 0 chr1 172823592 172823657 -24371775 + ID_B1 SINE B4 82 155 -69 6 1903 506 272 215 28 chr1 172823657 172824028 -24371404 + L1MB4 LINE L1 5335 5778 -402 6 1903 602 60 12 0 chr1 172824028 172824111 -24371321 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 6 1903 506 272 215 28 chr1 172824111 172824162 -24371270 + L1MB4 LINE L1 5779 5835 -345 6 1903 414 247 11 0 chr1 172824209 172824302 -24371130 + PB1D7 SINE Alu 1 94 -26 6 1903 273 291 53 26 chr1 172824302 172824321 -24371111 + ID_B1 SINE B4 82 196 -28 6 1903 299 239 14 0 chr1 172824321 172824392 -24371040 + L1MB4 LINE L1 5995 6066 -105 6 1903 582 75 0 0 chr1 172824462 172824542 -24370890 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 1903 593 229 30 0 chr1 172824549 172824680 -24370752 - B3A SINE B2 -62 136 2 6 1903 464 246 61 15 chr1 172824803 172824935 -24370497 - ID_B1 SINE B4 -5 219 82 6 1903 203 55 0 53 chr1 172825916 172825942 -24369490 + (TTG)n Simple_repeat Simple_repeat 1 25 0 6 1903 911 40 186 0 chr1 172825942 172826066 -24369366 - B1_Mm SINE Alu 0 147 1 6 1903 203 55 0 53 chr1 172826066 172826077 -24369355 + (TTG)n Simple_repeat Simple_repeat 2 12 0 6 1903 38 39 0 0 chr1 172826153 172826205 -24369227 + AT_rich Low_complexity Low_complexity 1 52 0 6 1903 839 176 7 13 chr1 172826410 172826560 -24368872 + B1_Mur4 SINE Alu 2 150 0 6 1903 207 162 0 0 chr1 172826599 172826636 -24368796 + A-rich Low_complexity Low_complexity 2 38 0 6 1903 435 19 0 0 chr1 172826739 172826791 -24368641 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1903 267 244 94 51 chr1 172826881 172827019 -24368413 - B1F SINE Alu -5 144 1 6 1903 217 194 31 31 chr1 172827361 172827425 -24368007 + T-rich Low_complexity Low_complexity 4 67 0 6 1903 296 267 205 8 chr1 172827425 172827542 -24367890 - ID_B1 SINE B4 0 224 85 6 1903 333 250 183 11 chr1 172827452 172827545 -24367887 - B1F SINE Alu -40 109 1 6 1903 686 265 10 53 chr1 172827583 172827790 -24367642 + B3A SINE B2 1 198 0 6 1903 227 233 116 53 chr1 172828316 172828411 -24367021 + PB1D10 SINE Alu 10 110 -7 6 1903 180 0 0 0 chr1 172828425 172828445 -24366987 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1903 227 299 26 0 chr1 172829345 172829422 -24366010 + L1MA8 LINE L1 5860 5938 -353 6 1903 240 210 69 98 chr1 172829407 172829581 -24365851 + Lx9 LINE L1 7440 7608 -36 6 1903 1212 41 0 26 chr1 172829680 172829831 -24365601 - B1_Mus2 SINE Alu 0 147 1 6 1903 355 246 54 140 chr1 172829842 172830050 -24365382 + MTEa LTR MaLR 94 314 -65 6 1903 567 257 35 7 chr1 172830050 172830191 -24365241 + B1_Mur1 SINE Alu 5 149 0 6 1903 355 241 32 155 chr1 172830191 172830248 -24365184 + MTEa LTR MaLR 315 370 -9 6 1903 246 329 0 0 chr1 172830248 172830321 -24365111 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1903 952 145 0 20 chr1 172830464 172830612 -24364820 + B1_Mur3 SINE Alu 3 147 -2 6 1903 3397 30 5 0 chr1 172830633 172831027 -24364405 + MTA_Mm LTR MaLR 1 396 0 6 1903 22 35 0 0 chr1 172831041 172831070 -24364362 + AT_rich Low_complexity Low_complexity 1 29 0 6 1903 33 0 0 0 chr1 172831165 172831198 -24364234 + AT_rich Low_complexity Low_complexity 1 33 0 6 1903 546 152 292 24 chr1 172831255 172831423 -24364009 - B3 SINE B2 -3 213 1 6 1903 1068 63 0 27 chr1 172831542 172831689 -24363743 + B1_Mm SINE Alu 5 147 0 6 1903 198 0 0 0 chr1 172831689 172831711 -24363721 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1903 466 293 78 38 chr1 172831881 172832085 -24363347 + ORR1D2 LTR MaLR 10 243 -127 6 1903 334 300 30 8 chr1 172832083 172832214 -24363218 + MER5A1 DNA MER1_type 9 142 -24 6 1903 252 345 116 87 chr1 172832239 172832594 -24362838 - LTR78 LTR ERV1 -172 1132 774 6 1903 2585 89 147 0 chr1 172832594 172832975 -24362457 + BGLII_B LTR ERVK 3 439 -2 6 1903 414 345 116 87 chr1 172832975 172833102 -24362330 - LTR78 LTR ERV1 -531 773 636 6 1903 1544 144 150 6 chr1 172833210 172833524 -24361908 + RLTR15 LTR ERVK 1 359 0 6 1903 228 353 164 8 chr1 172833664 172833798 -24361634 - LTR78 LTR ERV1 -1000 304 150 6 1903 199 368 74 0 chr1 172833947 172834042 -24361390 + L3 LINE CR1 3970 4071 -418 7 1903 657 0 0 0 chr1 172834079 172834152 -24361280 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1903 350 283 42 35 chr1 172834419 172834562 -24360870 + B1F SINE Alu 4 147 -2 7 1903 1068 110 7 0 chr1 172834664 172834809 -24360623 + B1_Mus2 SINE Alu 1 146 -1 7 1903 615 101 18 18 chr1 172835887 172835998 -24359434 + (TCCC)n Simple_repeat Simple_repeat 2 112 0 7 1903 608 161 53 9 chr1 172836002 172836115 -24359317 - PB1D9 SINE Alu 0 120 3 7 1903 222 191 0 0 chr1 172836136 172836183 -24359249 + (TTA)n Simple_repeat Simple_repeat 2 48 0 7 1903 216 0 0 0 chr1 172836461 172836485 -24358947 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1903 1067 37 22 29 chr1 172836886 172837025 -24358407 + B1_Mm SINE Alu 1 138 -9 7 1903 764 175 0 53 chr1 172839085 172839236 -24356196 + B1_Mur3 SINE Alu 2 144 -5 7 1903 291 54 0 0 chr1 172839238 172839275 -24356157 + (CAACC)n Simple_repeat Simple_repeat 2 38 0 7 1903 182 108 0 51 chr1 172839308 172839347 -24356085 + CT-rich Low_complexity Low_complexity 1 37 0 7 1903 726 145 0 0 chr1 172839846 172839970 -24355462 + (CCA)n Simple_repeat Simple_repeat 3 126 0 7 1903 378 267 200 0 chr1 172840084 172840234 -24355198 - B3A SINE B2 -17 181 2 7 1903 428 252 9 26 chr1 172840274 172840388 -24355044 + PB1D10 SINE Alu 2 113 -4 7 1903 207 0 0 0 chr1 172840629 172840652 -24354780 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1903 433 259 0 41 chr1 172840674 172840795 -24354637 - PB1D9 SINE Alu -2 118 3 7 1903 231 305 102 66 chr1 172840955 172841092 -24354340 - B4A SINE B4 -46 246 105 7 1903 536 211 14 0 chr1 172841001 172841103 -24354329 - PB1D7 SINE Alu -9 111 8 7 1903 464 184 0 143 chr1 172841405 172841538 -24353894 + PB1D9 SINE Alu 2 115 -5 7 1903 476 284 20 0 chr1 172841599 172841701 -24353731 + B1_Mur1 SINE Alu 12 115 -34 7 1903 918 112 0 0 chr1 172841705 172841874 -24353558 + (GA)n Simple_repeat Simple_repeat 1 169 0 7 1903 24 0 0 0 chr1 172841953 172841977 -24353455 + AT_rich Low_complexity Low_complexity 1 24 0 7 1903 237 65 0 0 chr1 172844269 172844300 -24351132 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 7 1903 284 233 18 80 chr1 172844890 172845002 -24350430 - PB1 SINE Alu 0 127 23 7 1903 751 171 7 3 chr1 172845098 172845235 -24350197 - B3 SINE B2 -53 140 1 7 1903 370 253 0 0 chr1 172845287 172845366 -24350066 - MTEa LTR MaLR -300 79 1 7 1903 1630 276 174 24 chr1 172845668 172846299 -24349133 + MTE-int LTR MaLR 492 1217 -363 7 1903 1176 220 114 28 chr1 172846299 172846586 -24348846 + ORR1D2 LTR MaLR 1 312 -58 7 1903 1535 142 81 19 chr1 172846586 172846844 -24348588 - ORR1B1 LTR MaLR -2 392 119 7 1903 371 285 53 15 chr1 172846841 172846973 -24348459 + MTE-int LTR MaLR 1433 1569 -11 7 1903 535 282 53 116 chr1 172846943 172847275 -24348157 + ORR1E LTR MaLR 36 364 -15 7 1903 483 266 8 8 chr1 172847289 172847414 -24348018 - MLT1A0 LTR MaLR -202 163 39 7 1903 786 256 6 18 chr1 172847424 172847595 -24347837 + B3A SINE B2 4 172 -26 7 1903 634 223 0 32 chr1 172848619 172848744 -24346688 + B1F1 SINE Alu 22 142 -7 7 1903 1670 153 138 12 chr1 172849214 172849539 -24345893 + ORR1B2 LTR MaLR 1 366 -1 7 1903 2487 50 18 36 chr1 172849949 172850503 -24344929 + RLTR10C LTR ERVK 1 429 -7 7 1903 198 0 0 0 chr1 172850621 172850643 -24344789 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 7 1903 301 219 16 25 chr1 172851381 172851503 -24343929 + CT-rich Low_complexity Low_complexity 3 123 0 7 1903 512 232 144 0 chr1 172853000 172853125 -24342307 - B1F SINE Alu -6 143 1 7 1903 683 237 23 120 chr1 172853243 172853459 -24341973 + B4 SINE B4 95 289 -3 7 1903 264 204 0 0 chr1 172853554 172853598 -24341834 + ID4 SINE ID 23 66 -17 7 1903 2657 127 5 12 chr1 172853784 172854207 -24341225 + Lx2B LINE L1 6576 6995 -5 7 1903 746 173 14 14 chr1 172854292 172854433 -24340999 - B1_Mur3 SINE Alu 0 149 9 7 1903 764 289 10 38 chr1 172854937 172855146 -24340286 + B3 SINE B2 2 204 -12 7 1903 180 125 0 0 chr1 172855148 172855180 -24340252 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 7 1903 506 318 0 33 chr1 172855791 172855944 -24339488 - B1F SINE Alu 0 149 2 7 1903 236 340 39 85 chr1 172856154 172856414 -24339018 - L2c LINE L2 -223 3164 2917 7 1903 423 0 0 0 chr1 172856766 172856813 -24338619 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1903 639 0 0 0 chr1 172856942 172857013 -24338419 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 7 1903 658 267 66 6 chr1 172859515 172859696 -24335736 - B3 SINE B2 0 216 25 7 1903 1535 68 5 0 chr1 172859746 172859938 -24335494 - B2_Mm1a SINE B2 0 193 1 7 1903 525 227 36 0 chr1 172859979 172860089 -24335343 - RSINE1 SINE B4 -49 116 3 7 1903 440 270 206 45 chr1 172860235 172860469 -24334963 - B4 SINE B4 -9 283 4 7 1903 377 350 124 19 chr1 172860493 172860912 -24334520 - L1ME2 LINE L1 -2 6162 5700 7 1903 195 42 0 0 chr1 172861002 172861026 -24334406 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 7 1903 698 202 0 0 chr1 172861036 172861155 -24334277 - B1_Mur4 SINE Alu 0 150 32 7 1903 1004 132 162 16 chr1 172861155 172861340 -24334092 - B3 SINE B2 -4 212 1 7 1903 531 0 0 0 chr1 172861507 172861566 -24333866 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1903 279 0 0 0 chr1 172861566 172861596 -24333836 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1903 655 191 43 0 chr1 172861769 172861884 -24333548 - B1F SINE Alu -29 120 1 7 1903 1231 275 66 115 chr1 172861933 172861970 -24333462 - MLT2B1 LTR ERVL 0 520 485 7 1903 1316 90 34 0 chr1 172861970 172862148 -24333284 + B2_Mm1a SINE B2 1 184 -9 7 1903 1231 275 66 115 chr1 172862148 172862657 -24332775 - MLT2B1 LTR ERVL -36 484 1 7 1903 2774 28 6 3 chr1 172862979 172863306 -24332126 + L1Md_F3 LINE L1 6243 6570 -14 7 1903 1949 174 56 6 chr1 172863560 172863902 -24331530 + RLTR41 LTR ERV1 62 420 -26 7 1903 460 30 30 0 chr1 172864138 172864204 -24331228 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 7 1903 379 216 15 114 chr1 172864937 172865068 -24330364 + PB1D7 SINE Alu 1 118 -2 7 1903 261 234 25 38 chr1 172865068 172865090 -24330342 - L1MD LINE L1 -1768 4378 4356 7 1903 1339 96 5 31 chr1 172865090 172865284 -24330148 - B2_Mm1t SINE B2 -3 190 2 7 1903 261 220 72 42 chr1 172865284 172865383 -24330049 - L1MD LINE L1 -1791 4355 4255 7 1903 448 211 61 31 chr1 172865401 172865499 -24329933 - B1F2 SINE Alu -1 148 48 7 1903 345 236 0 0 chr1 172865544 172865616 -24329816 + tRNA-Ala-GCA tRNA tRNA 4 75 0 7 1903 460 234 70 8 chr1 172865646 172865775 -24329657 - L1MD LINE L1 -1911 4235 4099 7 1903 331 212 38 0 chr1 172865782 172865855 -24329577 + B3 SINE B2 1 77 -118 7 1903 234 196 0 0 chr1 172865859 172865905 -24329527 + MTEb LTR MaLR 2 47 -332 7 1903 727 272 33 33 chr1 172866314 172866527 -24328905 + MTEb LTR MaLR 167 379 0 7 1903 260 301 100 75 chr1 172867186 172867466 -24327966 - RLTR15 LTR ERVK -25 334 48 7 1903 351 327 19 0 chr1 172867753 172867860 -24327572 + RSINE1 SINE B4 46 154 -11 7 1903 323 311 41 16 chr1 172867861 172867982 -24327450 - L1MC4a LINE L1 -1203 6679 6556 7 1903 38 22 0 0 chr1 172868013 172868058 -24327374 + AT_rich Low_complexity Low_complexity 1 45 0 7 1903 761 292 20 20 chr1 172868068 172868264 -24327168 + ID_B1 SINE B4 21 216 -8 7 1903 437 275 74 47 chr1 172868512 172868661 -24326771 - RSINE1 SINE B4 -10 155 3 7 1903 226 152 17 17 chr1 172868837 172868897 -24326535 + GA-rich Low_complexity Low_complexity 2 61 0 7 1903 1195 118 11 6 chr1 172869863 172870042 -24325390 + B2_Mm1t SINE B2 2 181 -12 7 1903 338 92 490 0 chr1 172870072 172870170 -24325262 + B2_Mm2 SINE B2 47 192 -3 7 1903 1244 329 77 81 chr1 172870163 172871030 -24324402 + RCHARR1 DNA MER1_type 65 928 -46 7 1903 660 247 22 44 chr1 172871035 172871217 -24324215 + B3A SINE B2 5 182 -16 7 1903 773 277 71 65 chr1 172871319 172871643 -24323789 + LTR73 LTR ERV1 23 348 -224 7 1903 1647 61 66 0 chr1 172871651 172871879 -24323553 + RLTR4_Mm LTR ERV1 1 243 -499 7 1903 2110 66 20 20 chr1 172871881 172872176 -24323256 + RLTR4_Mm LTR ERV1 448 742 0 7 1903 70963 1 1 0 chr1 172872178 172879781 -24315651 + MuLV-int LTR ERV1 1 7606 0 7 1903 1647 61 66 0 chr1 172879783 172880011 -24315421 + RLTR4_Mm LTR ERV1 1 243 -499 7 1903 2110 66 20 20 chr1 172880013 172880308 -24315124 + RLTR4_Mm LTR ERV1 448 742 0 7 1903 686 160 0 0 chr1 172880531 172880637 -24314795 + PB1D9 SINE Alu 9 114 -6 7 1903 690 47 0 0 chr1 172880640 172880726 -24314706 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 7 1903 1257 276 25 9 chr1 172880817 172881132 -24314300 - MTE2b LTR MaLR -57 322 3 7 1903 228 114 29 0 chr1 172881349 172881384 -24314048 + PB1D7 SINE Alu 5 40 -80 7 1903 2067 214 57 18 chr1 172881381 172881595 -24313837 + RLTR11A2 LTR ERVK 18 232 -295 7 1903 723 54 0 0 chr1 172881595 172881687 -24313745 + (GGGGA)n Simple_repeat Simple_repeat 4 95 0 7 1903 2067 214 57 18 chr1 172881687 172881962 -24313470 + RLTR11A2 LTR ERVK 233 525 -2 7 1903 352 288 127 15 chr1 172882200 172882334 -24313098 + B4 SINE B4 56 204 -88 7 1903 596 195 56 16 chr1 172882236 172882361 -24313071 + B1_Mus1 SINE Alu 15 144 -4 7 1903 225 210 72 99 chr1 172882262 172882373 -24313059 + RLTR25B LTR ERVK 441 548 -480 7 1903 326 261 0 0 chr1 172882851 172882916 -24312516 + B3 SINE B2 1 65 -151 7 1903 328 333 91 60 chr1 172882920 172883172 -24312260 + HAL1 LINE L1 1833 2092 -415 7 1903 208 26 24 71 chr1 172883332 172883374 -24312058 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1903 278 278 23 23 chr1 172883378 172883507 -24311925 + HAL1 LINE L1 2299 2427 -80 7 1903 491 244 19 27 chr1 172883762 172883907 -24311525 + B3A SINE B2 1 129 -64 7 1903 441 0 0 0 chr1 172883907 172883956 -24311476 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 237 266 349 36 72 chr1 172883956 172884014 -24311418 + B2_Mm1t SINE B2 130 189 -4 7 237 1246 205 205 12 chr1 172883961 172884285 -24311147 - MTD LTR MaLR -12 407 19 7 1904 245 27 0 51 chr1 172884285 172884324 -24311108 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 8 1904 1284 34 0 0 chr1 172884582 172884729 -24310703 + B1_Mus1 SINE Alu 2 148 0 8 1904 8185 67 4 1 chr1 172884940 172886504 -24308928 + L1_Mus2 LINE L1 4998 6566 0 8 1904 265 309 124 62 chr1 172886559 172886704 -24308728 + MLT1L LTR MaLR 254 407 -203 8 1904 470 234 19 9 chr1 172886736 172886844 -24308588 + MLT1L LTR MaLR 494 602 -8 8 1904 696 239 70 12 chr1 172886918 172887090 -24308342 + ID_B1 SINE B4 27 207 -17 8 1904 926 119 13 0 chr1 172887096 172887247 -24308185 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 8 1904 745 131 0 0 chr1 172887412 172887519 -24307913 + B3 SINE B2 1 107 -109 8 1904 1197 56 0 0 chr1 172887577 172887721 -24307711 - B1_Mus1 SINE Alu 0 148 5 8 1904 335 78 20 0 chr1 172887978 172888029 -24307403 + (ATG)n Simple_repeat Simple_repeat 1 52 0 8 1904 334 299 170 68 chr1 172888344 172888667 -24306765 - MLT1A0 LTR MaLR -9 356 1 8 1904 242 135 0 0 chr1 172888690 172888727 -24306705 + ID4 SINE ID 13 49 -34 8 1904 25 31 0 0 chr1 172889169 172889201 -24306231 + AT_rich Low_complexity Low_complexity 1 32 0 8 1904 414 271 0 70 chr1 172889221 172889336 -24306096 - B4A SINE B4 0 292 186 8 1904 866 184 0 6 chr1 172889493 172889612 -24305820 + polypurine Low_complexity Low_complexity 2 120 0 8 1904 1452 44 0 0 chr1 172889612 172889792 -24305640 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1904 866 184 0 6 chr1 172889792 172889852 -24305580 + polypurine Low_complexity Low_complexity 121 180 0 8 1904 336 322 8 25 chr1 172889993 172890111 -24305321 + ID_B1 SINE B4 105 220 -4 8 1904 501 291 82 39 chr1 172890403 172890585 -24304847 + RMER15 LTR ERVL 373 562 -13 8 1904 735 12 0 0 chr1 172891808 172891892 -24303540 + (GA)n Simple_repeat Simple_repeat 2 85 0 8 1904 1148 86 114 6 chr1 172891892 172892067 -24303365 + B2_Mm2 SINE B2 1 194 -1 8 1904 253 185 15 15 chr1 172892074 172892140 -24303292 + GA-rich Low_complexity Low_complexity 1 66 0 8 1904 182 339 18 0 chr1 172892810 172892866 -24302566 - L3b LINE CR1 -13 469 413 8 1904 869 200 0 0 chr1 172893855 172894000 -24301432 + B1_Mur1 SINE Alu 2 146 -3 8 1904 746 206 223 0 chr1 172894267 172894442 -24300990 - B3 SINE B2 -2 214 1 8 1904 417 377 48 1 chr1 172894468 172894681 -24300751 - MIR SINE MIR -40 228 2 8 1904 23 54 0 0 chr1 172895078 172895115 -24300317 + AT_rich Low_complexity Low_complexity 1 37 0 8 1904 290 321 25 0 chr1 172895221 172895302 -24300130 - B1F SINE Alu 0 149 67 8 1904 449 312 18 59 chr1 172895340 172895510 -24299922 - RSINE1 SINE B4 -2 163 1 8 1904 327 333 22 15 chr1 172896903 172897037 -24298395 + MIRb SINE MIR 23 157 -111 8 1904 201 414 17 0 chr1 172897469 172897585 -24297847 - L2c LINE L2 -10 3377 3260 8 1904 463 132 26 26 chr1 172898742 172898820 -24296612 + MTC LTR MaLR 1 78 -343 8 1904 2286 97 79 3 chr1 172898821 172899162 -24296270 + ORR1B2 LTR MaLR 1 367 0 8 1904 363 241 93 14 chr1 172899169 172899308 -24296124 - L1MA4A LINE L1 -217 6086 5937 8 1904 369 0 0 0 chr1 172900039 172900080 -24295352 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1904 1314 44 0 6 chr1 172900250 172900410 -24295022 + B2_Mm2 SINE B2 3 161 -34 8 1904 236 30 0 29 chr1 172900410 172900444 -24294988 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 8 1904 6546 46 13 0 chr1 172900520 172901306 -24294126 + L1Md_F2 LINE L1 5786 6581 -1 8 1904 1142 164 50 0 chr1 172901323 172901524 -24293908 + B3 SINE B2 1 211 -5 8 1904 345 235 0 0 chr1 172901698 172901783 -24293649 + (TG)n Simple_repeat Simple_repeat 2 86 0 8 1904 348 243 146 0 chr1 172902108 172902211 -24293221 - B1_Mur1 SINE Alu 0 149 32 8 1904 341 321 18 71 chr1 172902578 172902600 -24292832 + MIR SINE MIR 60 80 -188 8 1904 1176 264 75 25 chr1 172902600 172902958 -24292474 + MTEb LTR MaLR 2 377 -2 8 1904 341 314 20 66 chr1 172902958 172903122 -24292310 + MIR SINE MIR 74 231 -37 8 1904 297 183 0 0 chr1 172903574 172903634 -24291798 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1904 516 270 0 0 chr1 172903692 172903803 -24291629 - ID_B1 SINE B4 -1 223 113 8 1904 322 151 27 0 chr1 172904904 172904977 -24290455 + (TA)n Simple_repeat Simple_repeat 1 75 0 8 1904 189 74 0 0 chr1 172904979 172905006 -24290426 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1904 1380 86 27 0 chr1 172905452 172905639 -24289793 - B2_Mm2 SINE B2 -3 192 1 8 1904 426 301 7 57 chr1 172906948 172907088 -24288344 - B1F SINE Alu -7 142 10 8 1904 410 331 61 50 chr1 172907096 172907277 -24288155 - MER20 DNA MER1_type -36 183 1 8 1904 1994 137 50 3 chr1 172907982 172908319 -24287113 + RLTR9A LTR ERVK 1 353 -15 8 1904 1656 241 32 11 chr1 172908448 172908826 -24286606 + RMER1B Other Other 2 387 -679 8 1904 2204 144 107 12 chr1 172908812 172909094 -24286338 + RMER1A Other Other 584 865 -165 8 1904 249 33 0 0 chr1 172909094 172909124 -24286308 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 8 1904 2204 144 107 12 chr1 172909124 172909243 -24286189 + RMER1A Other Other 866 1022 -8 8 1904 221 384 23 23 chr1 172909539 172909667 -24285765 - MIRb SINE MIR -112 156 29 8 1904 2094 108 56 0 chr1 172909788 172910094 -24285338 + ORR1A2 LTR MaLR 3 325 -2 8 1904 11073 130 65 11 chr1 172910094 172911954 -24283478 + ORR1A2-int LTR MaLR 1 1963 0 8 1904 2297 95 13 0 chr1 172911954 172912228 -24283204 + ORR1A2 LTR MaLR 1 278 -49 8 1904 1601 173 154 26 chr1 172912228 172912578 -24282854 - MTC LTR MaLR 0 421 27 8 1904 456 225 114 24 chr1 172913048 172913171 -24282261 + B1F SINE Alu 9 142 -7 8 1904 465 138 0 0 chr1 172913640 172913720 -24281712 + (TCCC)n Simple_repeat Simple_repeat 3 82 0 8 1904 2468 105 61 16 chr1 172913804 172914180 -24281252 + ORR1B1 LTR MaLR 2 394 0 8 1904 1470 83 16 0 chr1 172914211 172914403 -24281029 + B2_Mm2 SINE B2 1 195 0 8 1904 1514 185 69 7 chr1 172915392 172915680 -24279752 + MTD LTR MaLR 112 417 -2 8 1904 250 185 0 36 chr1 172915717 172915773 -24279659 + CT-rich Low_complexity Low_complexity 2 55 0 8 1904 369 277 0 0 chr1 172916683 172916766 -24278666 + ID4 SINE ID 1 83 0 8 1904 230 29 0 56 chr1 172916771 172916807 -24278625 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 8 1904 635 250 132 11 chr1 172916944 172917134 -24278298 - B3 SINE B2 0 216 4 8 1904 456 137 0 0 chr1 172917529 172917631 -24277801 + (TC)n Simple_repeat Simple_repeat 2 103 0 8 1904 1684 95 208 13 chr1 172917886 172918038 -24277394 + BGLII_Mus LTR ERVK 7 193 -229 8 1904 1086 89 14 0 chr1 172918038 172918320 -24277112 + (GA)n Simple_repeat Simple_repeat 1 285 0 8 1904 1684 95 208 13 chr1 172918320 172918464 -24276968 + BGLII_Mus LTR ERVK 194 361 -61 8 1904 610 161 0 0 chr1 172918647 172918740 -24276692 + BGLII_Mus LTR ERVK 329 421 0 8 1904 243 0 0 0 chr1 172919362 172919389 -24276043 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1904 537 230 29 87 chr1 172919408 172919546 -24275886 - RSINE1 SINE B4 -34 131 2 8 1904 2230 235 89 95 chr1 172919795 172920626 -24274806 - RMER17B LTR ERVK -132 826 1 8 1904 1333 215 275 7 chr1 172920626 172921033 -24274399 + MT2A LTR ERVL 18 533 0 8 1904 490 143 19 0 chr1 172921068 172921173 -24274259 + CT-rich Low_complexity Low_complexity 2 108 0 8 1904 249 33 0 0 chr1 172921428 172921458 -24273974 + (TAA)n Simple_repeat Simple_repeat 1 30 0 8 1904 60 69 0 0 chr1 172921463 172921579 -24273853 + AT_rich Low_complexity Low_complexity 1 116 0 8 1904 1190 68 0 7 chr1 172921666 172921815 -24273617 - B1_Mus1 SINE Alu 0 148 1 8 1904 315 227 147 0 chr1 172922182 172922257 -24273175 - B1_Mur3 SINE Alu -62 87 2 8 1904 2002 170 68 3 chr1 172922564 172922901 -24272531 + ORR1B2 LTR MaLR 1 359 -8 8 1904 2185 81 0 35 chr1 172923027 172923346 -24272086 + L1Md_F2 LINE L1 6273 6580 -2 8 1904 561 296 73 16 chr1 172923358 172923550 -24271882 + RLTR20D LTR ERVK 1 203 -365 8 1904 602 235 16 37 chr1 172923558 172923761 -24271671 + L1_Mur3 LINE L1 5199 5432 -724 8 1904 305 246 0 0 chr1 172923767 172923828 -24271604 + ID_B1 SINE B4 81 141 -83 8 1904 459 220 10 0 chr1 172923830 172923930 -24271502 + L1M2 LINE L1 5512 5612 -679 8 1904 1020 99 43 0 chr1 172924025 172924166 -24271266 + B1_Mus1 SINE Alu 1 147 -1 8 1904 1279 34 0 0 chr1 172924175 172924322 -24271110 + B1_Mm SINE Alu 1 147 0 8 1904 2427 171 26 44 chr1 172924696 172925193 -24270239 + RLTR16 LTR ERVK 1 488 -17 8 1904 414 0 0 0 chr1 172925776 172925822 -24269610 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1904 294 313 205 33 chr1 172925865 172925934 -24269498 + L2 LINE L2 2480 2566 -853 8 1904 2249 111 9 15 chr1 172925934 172926263 -24269169 + ORR1A2 LTR MaLR 1 327 0 8 1904 294 313 205 33 chr1 172926263 172926613 -24268819 + L2 LINE L2 2567 2971 -448 8 1904 3277 45 10 5 chr1 172927136 172927534 -24267898 - MTB LTR MaLR 0 400 1 8 1904 293 296 45 112 chr1 172928691 172928731 -24266701 - MLT1L LTR MaLR -424 186 157 8 1904 339 248 350 0 chr1 172928731 172928868 -24266564 + MER5A DNA MER1_type 5 189 0 8 1904 293 296 45 112 chr1 172928868 172929006 -24266426 - MLT1L LTR MaLR -454 156 20 8 1904 779 287 15 67 chr1 172929002 172929271 -24266161 - MT2A LTR ERVL -71 462 208 8 1904 2986 67 11 0 chr1 172929334 172929801 -24265631 - L1_Mus1 LINE L1 -600 5967 5496 8 1904 1236 82 0 6 chr1 172929801 172929973 -24265459 + L1_Mus1 LINE L1 6397 6567 0 8 1904 35 0 0 0 chr1 172929975 172930010 -24265422 + AT_rich Low_complexity Low_complexity 1 35 0 8 1904 898 111 0 0 chr1 172930012 172930138 -24265294 - B2_Mm2 SINE B2 -68 127 2 8 1904 8521 94 59 156 chr1 172930400 172930818 -24264614 + RLTR21 LTR ERVK 1 432 -1140 8 1904 194 0 0 37 chr1 172930818 172930845 -24264587 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1904 8521 94 59 156 chr1 172930845 172931025 -24264407 + RLTR21 LTR ERVK 433 616 -956 8 1904 1172 55 14 0 chr1 172931025 172931170 -24264262 + B1_Mm SINE Alu 1 147 0 8 1904 8521 94 59 156 chr1 172931170 172931632 -24263800 + RLTR21 LTR ERVK 617 1052 -520 8 1904 1021 101 42 73 chr1 172931632 172931824 -24263608 + B2_Mm2 SINE B2 1 186 -9 9 1904 8521 94 59 156 chr1 172931824 172932077 -24263355 + RLTR21 LTR ERVK 1053 1193 -379 8 1904 1246 192 131 38 chr1 172932077 172932265 -24263167 + RMER17C LTR ERVK 1 184 -226 9 1904 198 0 0 0 chr1 172932265 172932287 -24263145 + (TCC)n Simple_repeat Simple_repeat 1 22 0 9 1904 1246 192 131 38 chr1 172932287 172932471 -24262961 + RMER17C LTR ERVK 185 407 -3 9 1904 8521 94 59 156 chr1 172932471 172932576 -24262856 + RLTR21 LTR ERVK 1194 1289 -283 8 1904 432 0 0 0 chr1 172932576 172932624 -24262808 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1904 8521 94 59 156 chr1 172932624 172932940 -24262492 + RLTR21 LTR ERVK 1290 1569 -3 8 1904 841 96 112 0 chr1 172933013 172933138 -24262294 - B1_Mus1 SINE Alu 0 148 10 9 1904 686 288 43 19 chr1 172933216 172933425 -24262007 - MT2A LTR ERVL -312 221 8 8 1904 558 176 139 0 chr1 172933509 172933617 -24261815 + B1_Mm SINE Alu 13 135 -12 9 1904 318 50 0 0 chr1 172933639 172933679 -24261753 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1904 384 207 149 14 chr1 172933974 172934109 -24261323 - PB1D9 SINE Alu -1 148 1 9 1904 269 260 128 20 chr1 172934027 172934129 -24261303 - ID_B1 SINE B4 -52 172 60 9 1904 338 360 18 9 chr1 172934121 172934233 -24261199 - RSINE1 SINE B4 -42 123 11 9 1904 219 69 0 0 chr1 172934254 172934283 -24261149 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1904 689 188 22 8 chr1 172934283 172934406 -24261026 - B1_Mur1 SINE Alu -10 139 15 9 1904 21 0 0 0 chr1 172934835 172934856 -24260576 + AT_rich Low_complexity Low_complexity 1 21 0 9 1904 515 170 91 36 chr1 172934871 172934981 -24260451 - B1_Mur4 SINE Alu -1 149 34 9 1904 3489 138 52 46 chr1 172935572 172936206 -24259226 - RLTR33 LTR ERVK 0 678 57 9 1904 180 365 32 0 chr1 172936602 172936665 -24258767 - MIR3 SINE MIR -47 161 97 9 1904 219 36 0 0 chr1 172937042 172937070 -24258362 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 9 1904 583 81 0 0 chr1 172937095 172937169 -24258263 - B2_Mm1t SINE B2 -38 155 82 9 1904 1162 185 10 0 chr1 172937169 172937369 -24258063 - B3 SINE B2 -14 202 1 9 1904 25 31 0 0 chr1 172937562 172937594 -24257838 + AT_rich Low_complexity Low_complexity 1 32 0 9 1904 591 279 7 7 chr1 172937981 172938122 -24257310 - B1_Mur1 SINE Alu -7 142 2 9 1904 813 213 94 30 chr1 172938197 172938400 -24257032 + B3 SINE B2 1 216 0 9 1904 1208 62 0 0 chr1 172938659 172938805 -24256627 + B1_Mm SINE Alu 2 147 0 9 1904 291 186 68 0 chr1 172939120 172939179 -24256253 + PB1D9 SINE Alu 52 114 -6 9 1904 526 119 25 33 chr1 172939179 172939301 -24256131 + GA-rich Low_complexity Low_complexity 1 121 0 9 1904 585 0 0 0 chr1 172939354 172939419 -24256013 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 1904 782 190 8 16 chr1 172939423 172939572 -24255860 - B1_Mus1 SINE Alu -2 146 2 9 1904 1067 188 14 32 chr1 172939607 172939827 -24255605 - B3 SINE B2 0 216 1 9 1904 426 364 50 22 chr1 172939831 172940121 -24255311 + MLT1G LTR MaLR 130 431 -164 9 1904 839 212 0 7 chr1 172940470 172940622 -24254810 + B3A SINE B2 1 151 -47 9 1904 2253 23 4 0 chr1 172940648 172940908 -24254524 - RLTR10-int LTR ERVK -1686 301 41 9 1904 2977 44 2 89 chr1 172940918 172941345 -24254087 - RLTR10 LTR ERVK 0 390 1 9 1904 230 247 139 25 chr1 172941463 172941542 -24253890 - LTR50 LTR ERVL -296 499 412 9 1904 474 179 0 0 chr1 172941485 172941569 -24253863 - B3A SINE B2 -114 84 1 9 1904 322 295 144 26 chr1 172941576 172941729 -24253703 - MLT1B LTR MaLR -219 171 1 9 1904 324 0 0 0 chr1 172942618 172942654 -24252778 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1904 826 197 0 39 chr1 172942876 172943029 -24252403 - B1_Mur2 SINE Alu -1 148 2 9 1904 978 212 18 32 chr1 172943212 172943431 -24252001 + B3 SINE B2 1 216 0 9 1904 236 203 14 28 chr1 172943438 172943509 -24251923 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 9 1904 360 336 0 81 chr1 172943510 172943646 -24251786 - RSINE1 SINE B4 -25 140 16 9 1904 22 0 0 0 chr1 172943664 172943686 -24251746 + AT_rich Low_complexity Low_complexity 1 22 0 9 1904 405 250 45 0 chr1 172943686 172943798 -24251634 - PB1D10 SINE Alu 0 117 1 9 1904 25 0 0 0 chr1 172943812 172943837 -24251595 + AT_rich Low_complexity Low_complexity 1 25 0 9 1904 1681 117 12 4 chr1 172943839 172944093 -24251339 + RLTR12A LTR ERVK 259 514 -54 9 1904 349 78 0 19 chr1 172944093 172944145 -24251287 + B1_Mur4 SINE Alu 1 51 -99 9 1904 326 175 0 0 chr1 172944184 172944247 -24251185 + RLTR12A LTR ERVK 500 562 -6 9 1904 1507 37 37 5 chr1 172944248 172944437 -24250995 + B2_Mm2 SINE B2 1 195 0 9 1904 607 258 0 0 chr1 172944455 172944575 -24250857 + B3A SINE B2 1 120 -78 9 1904 254 400 8 17 chr1 172944624 172944741 -24250691 - L2b LINE L2 -6 3369 3254 9 1904 711 263 88 98 chr1 172944811 172945106 -24250326 + ORR1E LTR MaLR 8 299 -60 9 1904 223 222 0 22 chr1 172945298 172945344 -24250088 - MIR SINE MIR -59 149 105 9 1904 227 304 0 25 chr1 172945653 172945728 -24249704 + GA-rich Low_complexity Low_complexity 4 76 0 9 1904 2771 90 68 33 chr1 172945728 172946154 -24249278 - BGLII_B LTR ERVK 0 441 1 9 1904 1822 155 128 0 chr1 172946335 172946664 -24248768 + ORR1D1 LTR MaLR 1 371 -3 9 1904 1153 75 7 0 chr1 172946664 172946810 -24248622 + B1_Mus1 SINE Alu 2 148 0 9 1904 192 83 53 53 chr1 172946810 172946886 -24248546 + A-rich Low_complexity Low_complexity 4 79 0 9 1904 252 326 33 0 chr1 172949319 172949411 -24246021 + MIR3 SINE MIR 100 194 -14 9 1904 450 268 104 59 chr1 172950636 172950838 -24244594 + RLTR12B LTR ERVK 9 219 -309 9 1904 273 269 52 100 chr1 172950823 172951054 -24244378 + RLTR15 LTR ERVK 102 321 -38 9 1904 1154 103 99 38 chr1 172951702 172951913 -24243519 - URR1A DNA MER1_type 0 226 3 9 1904 574 256 43 49 chr1 172952307 172952471 -24242961 + RSINE1 SINE B4 3 165 0 9 1904 1087 83 130 6 chr1 172952479 172952648 -24242784 - B2_Mm2 SINE B2 -4 191 2 9 1904 904 181 0 0 chr1 172952684 172952833 -24242599 + B1_Mur2 SINE Alu 1 149 0 9 1904 23 0 0 0 chr1 172953030 172953053 -24242379 + AT_rich Low_complexity Low_complexity 1 23 0 9 1904 309 336 15 23 chr1 172953300 172953431 -24242001 + ID_B1 SINE B4 93 222 -2 9 1904 980 55 110 0 chr1 172953434 172953561 -24241871 + B1_Mus1 SINE Alu 1 141 -7 9 1904 363 44 0 0 chr1 172953569 172953614 -24241818 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1904 377 279 62 18 chr1 172953790 172953903 -24241529 - B1F SINE Alu 0 149 32 9 1904 1085 114 7 0 chr1 172954615 172954764 -24240668 - B1_Mur4 SINE Alu 0 150 1 9 1904 345 315 82 27 chr1 172954851 172954998 -24240434 - HAL1-3A_ME LINE L1 -724 2134 1980 9 1904 216 154 0 0 chr1 172954998 172955050 -24240382 + CT-rich Low_complexity Low_complexity 2 53 0 9 1904 395 157 9 0 chr1 172955045 172955153 -24240279 + (TG)n Simple_repeat Simple_repeat 2 110 0 9 1904 608 161 6 0 chr1 172955174 172955336 -24240096 + (TG)n Simple_repeat Simple_repeat 2 164 0 9 1904 993 92 35 0 chr1 172955490 172955632 -24239800 + B1_Mus1 SINE Alu 2 148 0 9 1904 589 213 40 32 chr1 172956005 172956131 -24239301 - RSINE1 SINE B4 -12 153 27 9 1904 1161 68 0 13 chr1 172956145 172956294 -24239138 + B1_Mus2 SINE Alu 1 147 0 9 1904 1772 160 44 70 chr1 172956338 172956722 -24238710 - ORR1D1 LTR MaLR 0 374 1 9 1904 300 294 8 0 chr1 172956744 172956863 -24238569 + L1MC4 LINE L1 7923 8042 0 9 1904 904 191 65 0 chr1 172956869 172957051 -24238381 + B3 SINE B2 2 191 -25 9 1904 422 36 18 0 chr1 172957051 172957107 -24238325 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 9 1904 904 191 65 0 chr1 172957107 172957123 -24238309 + B3 SINE B2 192 212 -4 9 1904 732 207 14 7 chr1 172957138 172957284 -24238148 + B1_Mur1 SINE Alu 2 148 -1 9 1904 565 254 146 0 chr1 172957299 172957483 -24237949 + B4 SINE B4 2 212 -80 9 1904 1347 232 139 21 chr1 172957483 172957858 -24237574 - MTD LTR MaLR 0 419 1 9 1904 325 174 13 127 chr1 172957869 172957948 -24237484 + B4 SINE B4 223 292 0 9 1904 267 269 0 0 chr1 172957953 172958061 -24237371 + (CA)n Simple_repeat Simple_repeat 2 109 0 9 1904 37 0 0 21 chr1 172958067 172958095 -24237337 + AT_rich Low_complexity Low_complexity 1 28 0 9 1904 1316 68 0 6 chr1 172958095 172958259 -24237173 + U1 snRNA snRNA 1 163 -2 9 1904 37 0 0 21 chr1 172958259 172958278 -24237154 + AT_rich Low_complexity Low_complexity 1 19 0 9 1904 1051 161 113 5 chr1 172958283 172958477 -24236955 + B3 SINE B2 2 216 0 9 1904 234 0 0 0 chr1 172958614 172958640 -24236792 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1904 1235 48 0 0 chr1 172958640 172958786 -24236646 - B1_Mm SINE Alu 0 147 2 9 1904 694 217 23 0 chr1 172958786 172958915 -24236517 + B1_Mur1 SINE Alu 11 142 -7 9 1904 441 0 0 0 chr1 172958915 172958964 -24236468 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1904 293 76 14 43 chr1 172959578 172959647 -24235785 + (TTTG)n Simple_repeat Simple_repeat 4 70 0 9 1904 284 289 217 12 chr1 172960027 172960188 -24235244 + Lx8 LINE L1 7152 7345 -128 9 1904 922 225 33 9 chr1 172960744 172960955 -24234477 - B3 SINE B2 0 216 1 9 1904 751 266 52 6 chr1 172960992 172961166 -24234266 + B3 SINE B2 1 182 -34 9 1904 4259 108 63 14 chr1 172961169 172961815 -24233617 - RLTR33 LTR ERVK 0 678 1 9 1904 195 279 62 71 chr1 172962360 172962472 -24232960 - MIR SINE MIR -68 140 30 9 1904 2165 120 7 45 chr1 172962890 172963316 -24232116 + RMER17C LTR ERVK 1 410 0 9 1904 187 215 182 61 chr1 172963352 172963451 -24231981 - L2a LINE L2 -29 3397 3287 9 1904 674 0 0 0 chr1 172964072 172964146 -24231286 - tRNA-Asn-AAC tRNA tRNA -3 74 1 9 1904 970 169 179 13 chr1 172964994 172965228 -24230204 + ORR1D1 LTR MaLR 1 273 -101 9 1904 221 217 0 62 chr1 172965236 172965300 -24230132 + A-rich Low_complexity Low_complexity 5 64 0 9 1904 236 301 0 0 chr1 172965639 172965722 -24229710 + L1MC1 LINE L1 5717 5799 -2083 1 1904 215 31 31 0 chr1 172965802 172965834 -24229598 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1904 367 278 152 30 chr1 172965843 172966040 -24229392 + L1MC1 LINE L1 6094 6314 -19 1 1904 232 328 16 0 chr1 172966154 172966215 -24229217 + ID4 SINE ID 2 63 -20 1 1904 652 0 0 0 chr1 172967159 172967231 -24228201 - tRNA-Asp-GAY tRNA tRNA -3 72 1 1 1904 441 218 199 14 chr1 172967553 172967892 -24227540 - Charlie5 DNA MER1_type -73 2551 2147 1 1904 666 0 0 0 chr1 172968127 172968199 -24227233 - tRNA-Gly-GGA tRNA tRNA -3 72 1 1 1904 616 84 0 0 chr1 172968744 172968827 -24226605 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 1 1904 28 29 0 0 chr1 172968884 172968919 -24226513 + AT_rich Low_complexity Low_complexity 1 35 0 1 1904 219 294 33 56 chr1 172969310 172969400 -24226032 + MIRc SINE MIR 69 156 -112 1 1904 2417 261 92 52 chr1 172969823 172970695 -24224737 + Lx8 LINE L1 6241 7147 -326 1 1904 189 107 0 0 chr1 172970926 172970954 -24224478 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1904 1116 63 14 7 chr1 172970970 172971113 -24224319 + B1_Mus2 SINE Alu 2 145 -2 1 1904 505 214 30 10 chr1 172971123 172971222 -24224210 - B1F2 SINE Alu -17 132 32 1 1904 302 333 83 0 chr1 172971309 172971429 -24224003 + B3A SINE B2 47 176 -22 1 1904 961 290 37 11 chr1 172971442 172971822 -24223610 + L1MD3 LINE L1 7592 7981 -14 1 1904 488 184 81 0 chr1 172972439 172972526 -24222906 + B1F2 SINE Alu 36 129 -20 1 1904 828 224 4 74 chr1 172972862 172973093 -24222339 - B3 SINE B2 0 216 2 1 1904 22 56 0 0 chr1 172973102 172973138 -24222294 + AT_rich Low_complexity Low_complexity 1 36 0 1 1904 669 67 0 11 chr1 172973138 172973228 -24222204 + B1_Mur4 SINE Alu 62 150 0 1 1904 799 184 38 91 chr1 172973256 172973465 -24221967 + B3A SINE B2 1 198 0 1 1904 585 240 8 25 chr1 172973487 172973670 -24221762 + B3 SINE B2 15 188 -7 1 1904 908 173 53 21 chr1 172973860 172974049 -24221383 - B2_Mm2 SINE B2 0 195 1 1 1904 213 121 0 0 chr1 172974091 172974124 -24221308 + (CTTG)n Simple_repeat Simple_repeat 3 35 0 1 1904 760 184 22 0 chr1 172974126 172974262 -24221170 - B1_Mur2 SINE Alu -1 148 10 1 1904 642 14 0 0 chr1 172975115 172975187 -24220245 + tRNA-Gly-GGY tRNA tRNA 1 72 -2 1 1904 1380 107 5 14 chr1 172975596 172975805 -24219627 - URR1A DNA MER1_type 0 226 20 1 1904 1054 55 7 65 chr1 172976133 172976288 -24219144 + B1_Mus2 SINE Alu 2 147 0 1 1904 1129 49 14 7 chr1 172976588 172976732 -24218700 + B1_Mus2 SINE Alu 2 146 -1 1 1904 333 0 0 0 chr1 172977160 172977197 -24218235 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1904 810 158 7 27 chr1 172977287 172977437 -24217995 + B1_Mur2 SINE Alu 2 148 -1 1 1904 197 266 148 25 chr1 172977921 172978002 -24217430 + MIR3 SINE MIR 67 157 -51 1 1904 191 103 0 25 chr1 172978050 172978090 -24217342 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1904 768 166 71 7 chr1 172978093 172978233 -24217199 - B1_Mur4 SINE Alu -1 149 1 1 1904 258 311 148 45 chr1 172978291 172978493 -24216939 - L2a LINE L2 0 3426 3204 1 1904 804 61 0 42 chr1 172978535 172978548 -24216884 - B1_Mus1 SINE Alu 0 148 140 1 1904 315 0 0 0 chr1 172978548 172978583 -24216849 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1904 804 61 0 42 chr1 172978583 172978688 -24216744 - B1_Mus1 SINE Alu -9 139 35 1 1904 865 117 39 0 chr1 172978696 172978824 -24216608 - RMER19C LTR ERVK -22 589 457 1 1904 473 106 33 4 chr1 172978851 172978953 -24216479 + RLTR17 LTR ERVK 1 110 -582 1 1904 2245 193 42 58 chr1 172979458 172980025 -24215407 + RLTR17 LTR ERVK 61 618 -74 1 1904 995 216 245 36 chr1 172980045 172980262 -24215170 - RMER19C LTR ERVK -182 429 213 1 1904 1152 56 0 14 chr1 172980262 172980408 -24215024 - B1_Mm SINE Alu 0 147 4 1 1904 995 207 259 40 chr1 172980408 172980562 -24214870 - RMER19C LTR ERVK -399 212 1 1 1904 297 337 148 27 chr1 172981106 172981289 -24214143 - L2a LINE L2 -389 3030 2826 1 1904 358 341 52 0 chr1 172981441 172981576 -24213856 - RSINE1 SINE B4 -12 153 12 1 1904 452 256 29 52 chr1 172981581 172981717 -24213715 - B1F SINE Alu -16 133 1 1 1904 239 50 0 48 chr1 172982142 172982184 -24213248 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1904 614 186 97 0 chr1 172982184 172982308 -24213124 - B1_Mur2 SINE Alu -13 136 1 1 1904 4129 108 88 5 chr1 172982618 172983244 -24212188 + RLTR33 LTR ERVK 1 678 0 1 1904 301 266 47 14 chr1 172983281 172983398 -24212034 - PB1D10 SINE Alu -9 141 17 1 1904 1102 60 0 0 chr1 172983799 172983933 -24211499 + B1_Mus2 SINE Alu 1 134 -13 1 1904 222 62 0 0 chr1 172983933 172983965 -24211467 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1904 914 113 42 0 chr1 172984370 172984512 -24210920 + B1_Mur4 SINE Alu 1 148 -2 1 1904 372 282 244 0 chr1 172984567 172984698 -24210734 + ID_B1 SINE B4 43 205 -19 1 1904 890 42 16 25 chr1 172984699 172984712 -24210720 + B1_Mm SINE Alu 28 39 -108 1 1904 1419 74 26 0 chr1 172984712 172984901 -24210531 + B2_Mm2 SINE B2 2 195 0 1 1904 890 42 16 25 chr1 172984901 172985008 -24210424 + B1_Mm SINE Alu 40 147 0 1 1904 384 132 0 0 chr1 172985010 172985093 -24210339 + (A)n Simple_repeat Simple_repeat 1 83 0 1 1904 922 69 123 0 chr1 172985239 172985369 -24210063 + B1_Mus1 SINE Alu 2 147 -1 1 1904 269 271 129 79 chr1 172985600 172985740 -24209692 + MT2B2 LTR ERVL 140 286 -298 1 1904 442 248 135 0 chr1 172985619 172985747 -24209685 + ID_B1 SINE B4 71 222 -2 1 1904 260 355 48 8 chr1 172985902 172986027 -24209405 - MLT1A0 LTR MaLR -235 130 1 1 1904 252 0 0 0 chr1 172986051 172986079 -24209353 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1904 282 278 200 0 chr1 172986107 172986197 -24209235 - B1F SINE Alu -29 120 13 1 1904 186 43 0 0 chr1 172986206 172986229 -24209203 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1904 857 126 23 8 chr1 172986238 172986366 -24209066 - B1_Mus1 SINE Alu -18 130 1 1 1904 3371 52 5 5 chr1 172986456 172986879 -24208553 + RLTR1C LTR ERV1 1 423 -80 1 1904 968 160 65 22 chr1 172986890 172987062 -24208370 + B2_Mm2 SINE B2 1 180 -15 1 1904 210 37 0 0 chr1 172987062 172987089 -24208343 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1904 968 160 65 22 chr1 172987089 172987101 -24208331 + B2_Mm2 SINE B2 181 192 -3 1 1904 739 76 95 0 chr1 172987103 172987208 -24208224 + PB1D9 SINE Alu 1 115 -5 1 1904 834 57 0 0 chr1 172987358 172987464 -24207968 - B1_Mus2 SINE Alu -1 146 41 1 1904 648 0 0 0 chr1 172988287 172988359 -24207073 + (TAAAA)n Simple_repeat Simple_repeat 4 75 0 1 1904 245 271 26 79 chr1 172988443 172988519 -24206913 + ID4_ SINE ID 12 83 0 1 1904 489 248 37 52 chr1 172989132 172989268 -24206164 - ID_B1 SINE B4 0 224 91 1 1904 643 217 14 0 chr1 172990032 172990170 -24205262 - B1_Mur2 SINE Alu -7 142 3 1 1904 1159 48 0 52 chr1 172990220 172990375 -24205057 - B1_Mus2 SINE Alu 0 147 1 1 1904 226 164 250 15 chr1 172990406 172990474 -24204958 - MER33 DNA MER1_type -228 96 13 1 1904 2188 136 39 91 chr1 172990496 172990957 -24204475 - RLTR9B LTR ERVK 0 437 1 1 1904 184 294 34 45 chr1 172991282 172991371 -24204061 + L2 LINE L2 221 308 -3111 1 1904 340 194 41 75 chr1 172991462 172991574 -24203858 - B3A SINE B2 -1 215 103 1 1904 3471 112 144 3 chr1 172991574 172992159 -24203273 - RLTR19B LTR ERVK 0 715 49 1 1904 3902 49 8 14 chr1 172992178 172992677 -24202755 + LTRIS2 LTR ERV1 69 564 0 1 1904 333 82 0 228 chr1 172992691 172992770 -24202662 - RLTR19B LTR ERVK -435 61 1 1 1904 468 211 85 76 chr1 172992770 172992869 -24202563 - B3A SINE B2 -95 100 1 1 1904 180 0 0 0 chr1 172992920 172992940 -24202492 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1904 471 276 157 29 chr1 172993140 172993446 -24201986 + L2 LINE L2 2642 2986 -433 1 1904 181 97 97 0 chr1 172993519 172993550 -24201882 - L4 LINE RTE -1611 418 385 1 1904 359 121 17 17 chr1 172993767 172993826 -24201606 - RLTR45 LTR ERVK -10 472 414 1 1904 634 0 0 0 chr1 172994294 172994366 -24201066 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 1 1904 218 63 0 113 chr1 172994518 172994589 -24200843 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 1 1904 666 0 0 0 chr1 172994829 172994901 -24200531 - tRNA-Gly-GGA tRNA tRNA -3 72 1 1 1904 652 0 0 0 chr1 172995488 172995560 -24199872 - tRNA-Asp-GAY tRNA tRNA -3 72 1 1 1904 594 96 0 0 chr1 172996114 172996197 -24199235 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 1 1904 753 163 0 0 chr1 172996390 172996568 -24198864 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1 1904 267 182 0 0 chr1 172996576 172996653 -24198779 + (CATG)n Simple_repeat Simple_repeat 3 79 0 1 1904 598 28 0 0 chr1 172996761 172996832 -24198600 + tRNA-Gly-GGY tRNA tRNA 1 71 -3 1 1904 861 196 16 77 chr1 172997133 172997327 -24198105 - B2_Mm2 SINE B2 -3 192 11 1 1904 623 131 22 54 chr1 172997578 172997763 -24197669 + G-rich Low_complexity Low_complexity 1 179 0 1 1904 240 86 0 0 chr1 172997787 172997822 -24197610 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1904 240 149 0 0 chr1 172997913 172997960 -24197472 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1904 387 0 0 0 chr1 172998006 172998049 -24197383 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1904 282 56 0 0 chr1 172998219 172998255 -24197177 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 1 1904 1147 248 77 138 chr1 172998321 172999055 -24196377 - MTD-int LTR MaLR -395 703 1 1 1904 459 335 28 28 chr1 172999055 172999267 -24196165 - MTD LTR MaLR 0 419 208 1 1904 264 111 0 0 chr1 172999588 172999633 -24195799 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1904 219 275 0 14 chr1 172999637 172999707 -24195725 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1904 471 73 0 0 chr1 172999715 172999783 -24195649 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1904 214 158 0 0 chr1 173000419 173000457 -24194975 + C-rich Low_complexity Low_complexity 1 38 0 1 1904 243 79 0 0 chr1 173001020 173001058 -24194374 + (CCA)n Simple_repeat Simple_repeat 2 39 0 2 1904 245 75 25 0 chr1 173001139 173001179 -24194253 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1904 204 125 0 0 chr1 173001262 173001294 -24194138 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1904 606 0 0 0 chr1 173001922 173001994 -24193438 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 5 1904 237 58 0 115 chr1 173002146 173002224 -24193208 + (TTGGGG)n Simple_repeat Simple_repeat 2 70 0 6 1904 635 0 0 0 chr1 173002464 173002536 -24192896 - tRNA-Gly-GGA tRNA tRNA -3 72 1 7 1904 623 0 0 0 chr1 173003123 173003195 -24192237 - tRNA-Asp-GAY tRNA tRNA -3 72 1 8 1904 569 96 0 0 chr1 173003749 173003832 -24191600 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 9 1904 804 136 0 0 chr1 173004025 173004187 -24191245 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 1 1904 267 182 0 0 chr1 173004247 173004324 -24191108 + (CATG)n Simple_repeat Simple_repeat 2 78 0 1 1904 573 28 0 0 chr1 173004432 173004503 -24190929 + tRNA-Gly-GGY tRNA tRNA 1 71 -3 1 1904 812 196 16 77 chr1 173004776 173004970 -24190462 - B2_Mm2 SINE B2 -3 192 11 1 1904 623 131 22 54 chr1 173005221 173005406 -24190026 + G-rich Low_complexity Low_complexity 1 179 0 1 1904 181 57 0 54 chr1 173005408 173005430 -24190002 + (AGGGGG)n Simple_repeat Simple_repeat 3 24 0 1 1904 240 86 0 0 chr1 173005430 173005465 -24189967 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1904 181 57 0 54 chr1 173005465 173005479 -24189953 + (AGGGGG)n Simple_repeat Simple_repeat 1 13 0 1 1904 240 149 0 0 chr1 173005556 173005603 -24189829 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1904 225 0 0 0 chr1 173005649 173005674 -24189758 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1904 306 73 0 0 chr1 173005844 173005885 -24189547 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 1904 186 192 0 0 chr1 173005924 173005976 -24189456 + (CTG)n Simple_repeat Simple_repeat 1 52 0 2 1904 1098 247 72 138 chr1 173006077 173006688 -24188744 - MTD-int LTR MaLR -687 571 1 2 1904 433 335 28 28 chr1 173006688 173006900 -24188532 - MTD LTR MaLR 0 419 208 2 1904 264 111 0 0 chr1 173007221 173007266 -24188166 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1904 219 275 0 14 chr1 173007270 173007340 -24188092 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1904 399 68 0 0 chr1 173007349 173007408 -24188024 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1904 210 105 0 0 chr1 173008641 173008679 -24186753 + (CCA)n Simple_repeat Simple_repeat 2 39 0 2 1904 227 79 26 0 chr1 173008761 173008799 -24186633 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1904 606 0 0 0 chr1 173009536 173009608 -24185824 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 2 1904 237 58 0 115 chr1 173009760 173009838 -24185594 + (TTGGGG)n Simple_repeat Simple_repeat 2 70 0 2 1904 635 0 0 0 chr1 173010078 173010150 -24185282 - tRNA-Gly-GGA tRNA tRNA -3 72 1 3 1904 623 0 0 0 chr1 173010737 173010809 -24184623 - tRNA-Asp-GAY tRNA tRNA -3 72 1 3 1904 569 96 0 0 chr1 173011363 173011446 -24183986 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 3 1904 600 186 0 0 chr1 173011639 173011806 -24183626 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 3 1904 339 165 0 0 chr1 173011813 173011898 -24183534 + (CATG)n Simple_repeat Simple_repeat 2 86 0 3 1904 573 28 0 0 chr1 173012006 173012077 -24183355 + tRNA-Gly-GGY tRNA tRNA 1 71 -3 3 1904 791 201 16 77 chr1 173012378 173012572 -24182860 - B2_Mm2 SINE B2 -3 192 11 3 1904 602 137 22 54 chr1 173012823 173013008 -24182424 + G-rich Low_complexity Low_complexity 1 179 0 3 1904 181 57 0 54 chr1 173013010 173013032 -24182400 + (AGGGGG)n Simple_repeat Simple_repeat 3 24 0 3 1904 240 86 0 0 chr1 173013032 173013067 -24182365 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1904 181 57 0 54 chr1 173013067 173013081 -24182351 + (AGGGGG)n Simple_repeat Simple_repeat 1 13 0 4 1904 240 149 0 0 chr1 173013158 173013205 -24182227 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1904 225 0 0 0 chr1 173013251 173013276 -24182156 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1904 306 73 0 0 chr1 173013446 173013487 -24181945 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1904 186 192 0 0 chr1 173013526 173013578 -24181854 + (CTG)n Simple_repeat Simple_repeat 1 52 0 4 1904 1059 252 72 138 chr1 173013679 173014290 -24181142 - MTD-int LTR MaLR -687 571 1 4 1904 433 335 28 28 chr1 173014290 173014502 -24180930 - MTD LTR MaLR 0 419 208 4 1904 246 116 0 0 chr1 173014823 173014866 -24180566 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1904 219 275 0 14 chr1 173014870 173014940 -24180492 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1904 617 36 12 0 chr1 173014949 173015033 -24180399 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1905 243 79 0 0 chr1 173016293 173016331 -24179101 + (CCA)n Simple_repeat Simple_repeat 2 39 0 4 1905 180 0 0 0 chr1 173016373 173016393 -24179039 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1905 237 108 0 0 chr1 173016425 173016462 -24178970 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1905 240 242 0 15 chr1 173016466 173016533 -24178899 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1905 1352 174 11 8 chr1 173016579 173016839 -24178593 - RLTR15 LTR ERVK -98 261 1 5 1905 355 57 0 36 chr1 173016874 173016929 -24178503 + B1_Mur4 SINE Alu 2 54 -96 5 1905 354 173 82 9 chr1 173016929 173017047 -24178385 + MYSERV16_I-int LTR ERVK 2186 2305 -21 5 1905 1031 96 7 0 chr1 173017058 173017204 -24178228 - B1_Mus2 SINE Alu 0 147 1 5 1905 395 165 87 0 chr1 173017206 173017321 -24178111 - MYSERV-int LTR ERVK -181 6369 6245 5 1905 631 202 89 25 chr1 173017304 173017507 -24177925 - MYSERV16_I-int LTR ERVK -1124 1202 987 5 1905 1017 169 26 16 chr1 173017510 173017669 -24177763 + B2_Mm2 SINE B2 1 158 -37 5 1905 423 0 0 0 chr1 173017669 173017716 -24177716 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 6 1905 1017 169 26 16 chr1 173017716 173017748 -24177684 + B2_Mm2 SINE B2 159 194 -1 5 1905 2265 255 49 73 chr1 173017749 173018626 -24176806 - MYSERV16_I-int LTR ERVK -1350 976 121 5 1905 695 145 56 62 chr1 173018628 173018675 -24176757 - RLTR15 LTR ERVK -193 166 128 6 1905 1934 112 3 64 chr1 173018675 173019018 -24176414 + RLTRETN_Mm LTR ERVK 1 322 0 6 1905 695 145 56 62 chr1 173019018 173019132 -24176300 - RLTR15 LTR ERVK -232 127 6 6 1905 576 261 39 47 chr1 173019193 173019450 -24175982 - RLTR15 LTR ERVK -20 339 85 6 1905 182 62 31 0 chr1 173019489 173019521 -24175911 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1905 3854 161 25 15 chr1 173019632 173020317 -24175115 - RLTR17 LTR ERVK 0 692 1 6 1905 640 232 0 27 chr1 173020582 173020728 -24174704 + B1_Mus1 SINE Alu 3 144 -4 6 1905 461 280 141 12 chr1 173020760 173020930 -24174502 + B3A SINE B2 5 196 -2 6 1905 2103 99 9 61 chr1 173021246 173021590 -24173842 + ORR1A4 LTR MaLR 1 326 -3 6 1905 8600 137 20 90 chr1 173021593 173023352 -24172080 + ORR1A4-int LTR MaLR 1 1636 -327 6 1905 321 47 0 0 chr1 173023355 173023398 -24172034 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1905 442 77 0 0 chr1 173023412 173023477 -24171955 - B1_Mur4 SINE Alu 0 150 86 7 1905 748 187 42 55 chr1 173023484 173023683 -24171749 - RMER19B LTR ERVK -552 185 1 7 1905 1232 93 10 15 chr1 173023683 173023871 -24171561 + ORR1A4 LTR MaLR 101 301 -45 6 1905 1125 62 0 0 chr1 173023871 173024017 -24171415 + B1_Mus1 SINE Alu 1 146 -2 7 1905 1105 145 0 174 chr1 173024017 173024099 -24171333 + ORR1A4 LTR MaLR 302 344 -2 6 1905 696 316 55 19 chr1 173024225 173024496 -24170936 - RMER15-int LTR ERVL -3539 1460 1180 7 1905 632 344 9 27 chr1 173024760 173024981 -24170451 - RMER15-int LTR ERVL -4510 489 273 7 1905 335 224 30 0 chr1 173025590 173025657 -24169775 - RMER15-int LTR ERVL -4760 239 171 7 1905 351 324 7 52 chr1 173025659 173025812 -24169620 - RMER15 LTR ERVL -169 406 261 7 1905 246 211 24 73 chr1 173025807 173025889 -24169543 - RMER15 LTR ERVL -428 147 70 7 1905 790 187 0 0 chr1 173025938 173026077 -24169355 + B1_Mus1 SINE Alu 10 148 0 7 1905 671 273 28 11 chr1 173026102 173026280 -24169152 - B3A SINE B2 -16 182 2 7 1905 311 110 110 0 chr1 173026311 173026384 -24169048 - RMER10A LTR ERVL -7 435 355 7 1905 435 167 11 32 chr1 173026398 173026491 -24168941 + RMER17C LTR ERVK 1 91 -319 7 1905 447 19 0 0 chr1 173026492 173026544 -24168888 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1905 453 243 66 44 chr1 173027056 173027237 -24168195 + RMER17C LTR ERVK 194 378 -32 7 1905 992 228 152 20 chr1 173027242 173027380 -24168052 - RMER10A LTR ERVL -41 401 252 7 1905 1623 163 40 154 chr1 173027380 173027829 -24167603 + RMER10B LTR ERVL 1 398 0 8 1905 992 228 152 20 chr1 173027829 173028044 -24167388 - RMER10A LTR ERVL -191 251 2 7 1905 429 293 26 0 chr1 173028079 173028195 -24167237 + PB1 SINE Alu 7 125 -2 8 1905 213 39 0 0 chr1 173028273 173028299 -24167133 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 8 1905 426 280 76 0 chr1 173028477 173028609 -24166823 + RMER5 LTR ERV1 33 174 -360 8 1905 651 246 81 32 chr1 173028832 173029076 -24166356 + LTRIS4 LTR ERV1 269 519 0 8 1905 689 325 80 14 chr1 173029106 173029274 -24166158 + RMER5 LTR ERV1 218 390 -144 8 1905 3297 36 0 16 chr1 173029274 173029703 -24165729 + L1Md_F2 LINE L1 6161 6582 0 8 1905 689 325 80 14 chr1 173029703 173029821 -24165611 + RMER5 LTR ERV1 391 523 -11 8 1905 386 281 39 15 chr1 173029986 173030116 -24165316 + ID_B1 SINE B4 66 198 -26 8 1905 447 282 35 63 chr1 173030117 173030291 -24165141 + B3 SINE B2 43 211 -5 8 1905 224 261 62 0 chr1 173030374 173030436 -24164996 + B1F SINE Alu 66 131 -18 8 1905 646 41 10 0 chr1 173030436 173030513 -24164919 + ORR1A1 LTR MaLR 1 78 -268 8 1905 2588 64 3 0 chr1 173030513 173030857 -24164575 - ORR1A1 LTR MaLR -1 345 1 9 1905 1311 64 5 5 chr1 173030857 173031046 -24164386 - ORR1A1-int LTR MaLR 0 1792 1604 9 1905 2270 83 3 58 chr1 173031046 173031390 -24164042 - ORR1A1 LTR MaLR -2 325 1 9 1905 691 158 9 177 chr1 173031390 173031415 -24164017 - ORR1A1-int LTR MaLR -158 1212 1192 9 1905 569 96 0 0 chr1 173031968 173032051 -24163381 - tRNA-Leu-CTG tRNA tRNA -3 83 1 9 1905 623 0 0 0 chr1 173032501 173032573 -24162859 + tRNA-Asp-GAY tRNA tRNA 1 72 -3 9 1905 198 0 0 0 chr1 173032583 173032605 -24162827 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1905 635 0 0 0 chr1 173032886 173032958 -24162474 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 9 1905 606 0 0 0 chr1 173033173 173033245 -24162187 + tRNA-Glu-GAG_ tRNA tRNA 1 72 -3 9 1905 2208 133 50 11 chr1 173033602 173033983 -24161449 + MT2C_Mm LTR ERVL 4 399 -76 9 1905 356 283 19 0 chr1 173034582 173034688 -24160744 - PB1D10 SINE Alu 0 117 10 9 1905 227 287 53 0 chr1 173035248 173035342 -24160090 - RMER1C Other Other -18 1324 1226 9 1905 393 219 124 10 chr1 173035372 173035469 -24159963 - Lx8 LINE L1 -150 7323 7216 9 1905 275 275 44 0 chr1 173035652 173035743 -24159689 + RLTR9E LTR ERVK 284 378 -31 1 1905 1882 83 0 27 chr1 173035809 173036106 -24159326 - L1Md_F3 LINE L1 0 6584 6296 1 1905 198 0 0 0 chr1 173036161 173036183 -24159249 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1905 343 162 12 36 chr1 173036187 173036270 -24159162 - RLTR15 LTR ERVK -266 93 13 1 1905 252 0 0 0 chr1 173036422 173036450 -24158982 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1905 691 113 96 8 chr1 173036451 173036576 -24158856 - B1_Mur4 SINE Alu -6 144 9 1 1905 300 248 149 33 chr1 173036478 173036599 -24158833 - B4 SINE B4 -88 204 70 1 1905 691 265 48 85 chr1 173036719 173036991 -24158441 - MT2A LTR ERVL 0 601 340 1 1905 277 264 31 0 chr1 173036992 173037121 -24158311 + GA-rich Low_complexity Low_complexity 3 135 0 1 1905 715 215 61 145 chr1 173037124 173037352 -24158080 - MT2A LTR ERVL -324 209 1 1 1905 202 139 28 0 chr1 173037615 173037651 -24157781 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1905 338 258 116 26 chr1 173037669 173037824 -24157608 - MER34 LTR ERV1 -2 540 372 1 1905 758 180 107 6 chr1 173037857 173038025 -24157407 - RLTR22_Mur LTR ERVK -98 1750 1566 1 1905 4076 154 26 28 chr1 173038184 173038995 -24156437 - RLTR22_Mur LTR ERVK -1039 809 1 1 1905 406 273 58 0 chr1 173038990 173039011 -24156421 + B1F2 SINE Alu 13 140 -9 1 1905 453 270 0 0 chr1 173039011 173039111 -24156321 + ID_B1 SINE B4 116 215 -9 1 1905 799 196 0 0 chr1 173039183 173039331 -24156101 + B1_Mur3 SINE Alu 1 148 -1 1 1905 312 181 14 14 chr1 173039998 173040071 -24155361 + RMER19B LTR ERVK 357 429 -473 1 1905 401 277 0 15 chr1 173040134 173040266 -24155166 - ID_B1 SINE B4 -3 221 92 1 1905 680 188 16 0 chr1 173040149 173040277 -24155155 - B1_Mur4 SINE Alu -20 130 1 1 1905 653 13 0 0 chr1 173041573 173041649 -24153783 + tRNA-Val-GTG tRNA tRNA 1 76 0 1 1905 289 279 0 0 chr1 173042043 173042104 -24153328 + B4A SINE B4 31 91 -201 1 1905 878 197 48 27 chr1 173042268 173042456 -24152976 - B3 SINE B2 0 216 25 1 1905 180 0 0 0 chr1 173042465 173042485 -24152947 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1905 1308 89 0 21 chr1 173042497 173042691 -24152741 + B2_Mm2 SINE B2 1 190 -5 1 1905 312 242 0 15 chr1 173042692 173042759 -24152673 - B4A SINE B4 -139 153 88 1 1905 237 234 0 0 chr1 173042829 173042876 -24152556 - PB1D7 SINE Alu -15 105 59 1 1905 540 121 279 25 chr1 173043315 173043476 -24151956 + B3 SINE B2 15 216 0 1 1905 37 0 0 21 chr1 173043534 173043551 -24151881 + AT_rich Low_complexity Low_complexity 1 17 0 1 1905 666 92 235 0 chr1 173043551 173043670 -24151762 + B1_Mus1 SINE Alu 2 148 0 1 1905 37 0 0 21 chr1 173043670 173043700 -24151732 + AT_rich Low_complexity Low_complexity 1 30 0 1 1905 1356 140 13 18 chr1 173044740 173044966 -24150466 + URR1A DNA MER1_type 2 226 0 1 1905 376 175 288 0 chr1 173044991 173045071 -24150361 + B1_Mm SINE Alu 15 117 -30 1 1905 432 0 0 0 chr1 173045085 173045133 -24150299 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1905 303 200 65 86 chr1 173045138 173045231 -24150201 + PB1D10 SINE Alu 14 104 -13 1 1905 333 47 0 0 chr1 173045232 173045275 -24150157 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 1905 2520 132 11 23 chr1 173045279 173045719 -24149713 + RMER4B LTR ERVK 1 435 -150 1 1905 398 248 58 70 chr1 173046575 173046731 -24148701 - RLTR42-int LTR ERVK -4205 1317 1164 1 1905 360 295 35 64 chr1 173046749 173046890 -24148542 + MLT1G3 LTR MaLR 345 481 -114 1 1905 1419 230 90 3 chr1 173047152 173047335 -24148097 - MTEa LTR MaLR 0 379 180 1 1905 351 0 0 0 chr1 173047335 173047374 -24148058 + (CAGG)n Simple_repeat Simple_repeat 1 39 0 1 1905 1419 230 90 3 chr1 173047374 173047534 -24147898 - MTEa LTR MaLR -200 179 6 1 1905 356 0 23 0 chr1 173047556 173047600 -24147832 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1905 237 279 29 0 chr1 173047601 173047669 -24147763 - ID4_ SINE ID -13 70 1 1 1905 394 312 0 20 chr1 173047677 173047824 -24147608 - ID_B1 SINE B4 -2 222 79 1 1905 21 0 0 0 chr1 173047874 173047895 -24147537 + AT_rich Low_complexity Low_complexity 1 21 0 1 1905 234 208 42 0 chr1 173047904 173047952 -24147480 - PB1D7 SINE Alu -1 119 70 1 1905 361 299 11 0 chr1 173048037 173048124 -24147308 - RSINE1 SINE B4 -75 90 3 1 1905 237 330 57 0 chr1 173048155 173048243 -24147189 + BC1_Mm scRNA scRNA 2 94 -58 1 1905 953 33 0 8 chr1 173048312 173048434 -24146998 + (TTC)n Simple_repeat Simple_repeat 3 123 0 1 1905 303 28 0 0 chr1 173048434 173048470 -24146962 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1905 396 0 0 0 chr1 173048470 173048514 -24146918 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1905 1171 48 0 0 chr1 173048877 173049024 -24146408 + B1_Mus1 SINE Alu 2 148 0 1 1905 397 250 78 0 chr1 173049207 173049323 -24146109 + ID_B1 SINE B4 87 211 -13 1 1905 522 0 0 0 chr1 173049915 173049973 -24145459 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1905 542 254 115 31 chr1 173049987 173050178 -24145254 - RMER20B LTR ERVK -233 394 188 1 1905 238 226 105 70 chr1 173050159 173050226 -24145206 - RMER17A2 LTR ERVK -542 364 295 1 1905 1468 17 6 6 chr1 173050226 173050406 -24145026 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1905 238 226 105 70 chr1 173050406 173050509 -24144923 - RMER17A2 LTR ERVK -612 294 188 1 1905 312 182 24 61 chr1 173050495 173050577 -24144855 - B4 SINE B4 -203 89 11 1 1905 606 214 23 0 chr1 173050605 173050736 -24144696 - B1_Mur1 SINE Alu -2 147 14 1 1905 318 282 30 0 chr1 173051368 173051465 -24143967 - PB1D7 SINE Alu -7 110 1 1 1905 440 251 77 39 chr1 173051464 173051655 -24143777 - B3A SINE B2 -3 192 1 1 1905 453 219 95 24 chr1 173051842 173051968 -24143464 - B1_Mur1 SINE Alu -2 147 13 1 1905 366 42 0 0 chr1 173051975 173052023 -24143409 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1905 315 280 145 46 chr1 173052041 173052172 -24143260 - Lx8 LINE L1 -178 7295 7152 1 1905 267 149 43 43 chr1 173052161 173052231 -24143201 - Lx8 LINE L1 -250 7223 7154 1 1905 622 219 0 0 chr1 173052231 173052345 -24143087 - PB1D10 SINE Alu -3 114 1 1 1905 324 219 24 12 chr1 173053647 173053730 -24141702 + ID_B1 SINE B4 129 212 -12 1 1905 636 14 0 0 chr1 173053745 173053818 -24141614 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1905 404 150 119 0 chr1 173053829 173053922 -24141510 + B1_Mur1 SINE Alu 48 149 0 1 1905 300 317 0 71 chr1 173054036 173054148 -24141284 - PB1D10 SINE Alu -13 104 1 1 1905 764 96 9 0 chr1 173054275 173054390 -24141042 + (GA)n Simple_repeat Simple_repeat 2 117 0 1 1905 210 302 95 0 chr1 173054667 173054730 -24140702 - ID4_ SINE ID -10 73 5 1 1905 236 280 0 0 chr1 173054762 173054812 -24140620 + ID4_ SINE ID 30 79 -4 1 1905 578 196 0 89 chr1 173055535 173055658 -24139774 + B1_Mm SINE Alu 1 112 -35 1 1905 636 14 0 0 chr1 173055658 173055731 -24139701 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 1905 431 203 14 186 chr1 173055731 173055752 -24139680 + PB1D9 SINE Alu 103 120 0 1 1905 465 307 60 0 chr1 173057334 173057484 -24137948 - RSINE1 SINE B4 -4 161 3 1 1905 583 167 10 10 chr1 173057505 173057608 -24137824 + RMER19B LTR ERVK 796 898 -4 1 1905 1356 98 16 0 chr1 173057609 173057793 -24137639 + B2_Mm2 SINE B2 2 188 -7 1 1905 189 0 0 0 chr1 173057793 173057814 -24137618 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1905 248 351 9 26 chr1 173058070 173058098 -24137334 + ID SINE ID 55 80 -144 1 1905 385 238 9 87 chr1 173058098 173058213 -24137219 + PB1D10 SINE Alu 1 106 -11 1 1905 244 279 33 0 chr1 173058206 173058267 -24137165 + ID4_ SINE ID 14 76 -7 1 1905 258 280 108 0 chr1 173058373 173058466 -24136966 + B1F1 SINE Alu 34 136 -13 1 1905 355 238 12 0 chr1 173058748 173058828 -24136604 + ID4 SINE ID 3 83 0 1 1905 241 271 28 14 chr1 173060416 173060487 -24134945 + BC1_Mm scRNA scRNA 1 72 -80 1 1905 368 289 73 16 chr1 173060496 173060619 -24134813 - B1F SINE Alu -17 132 3 1 1905 921 232 130 0 chr1 173060832 173061017 -24134415 - ID_B1 SINE B4 -9 215 7 1 1905 881 164 50 0 chr1 173061044 173061184 -24134248 - B1_Mur3 SINE Alu -2 147 1 1 1905 620 190 282 12 chr1 173061204 173061374 -24134058 - B3 SINE B2 0 216 1 1 1905 991 262 40 44 chr1 173061375 173061424 -24134008 - B1_Mur3 SINE Alu -5 315 239 1 1905 402 209 16 132 chr1 173061424 173061545 -24133887 - MT2B LTR ERVL -344 257 151 1 1905 991 262 40 44 chr1 173061545 173061691 -24133741 - B1_Mur3 SINE Alu -5 238 2 1 1905 360 0 0 0 chr1 173061722 173061762 -24133670 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1905 771 194 189 21 chr1 173062106 173062296 -24133136 + URR1A DNA MER1_type 3 224 -2 1 1905 556 239 9 0 chr1 173062583 173062692 -24132740 + B1_Mur4 SINE Alu 30 139 -11 1 1905 774 182 139 36 chr1 173063488 173063682 -24131750 + B3 SINE B2 1 214 -2 1 1905 384 265 58 19 chr1 173063717 173063821 -24131611 + ID_B1 SINE B4 117 224 0 1 1905 1067 99 14 0 chr1 173063826 173063968 -24131464 + B1_Mus1 SINE Alu 3 146 -2 1 1905 301 70 35 0 chr1 173063991 173064048 -24131384 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1905 271 291 37 25 chr1 173064062 173064143 -24131289 - ID_B1 SINE B4 0 224 143 1 1905 351 248 36 44 chr1 173064192 173064317 -24131115 - B1_Mur1 SINE Alu 0 120 6 1 1905 247 223 177 9 chr1 173064493 173064606 -24130826 + B1F SINE Alu 9 140 -9 1 1905 375 269 0 0 chr1 173064626 173064704 -24130728 + ID_B1 SINE B4 147 224 0 2 1905 550 297 0 38 chr1 173064693 173064826 -24130606 + ID_B1 SINE B4 80 207 -17 2 1905 462 236 29 10 chr1 173064871 173065015 -24130417 + B3 SINE B2 1 174 -42 2 1905 210 37 0 0 chr1 173065037 173065064 -24130368 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1905 354 244 0 118 chr1 173065107 173065200 -24130232 + ID4_ SINE ID 2 83 0 2 1905 678 190 21 49 chr1 173065799 173065943 -24129489 + B1F2 SINE Alu 9 148 -1 2 1905 551 270 40 60 chr1 173066485 173066686 -24128746 + B3A SINE B2 1 197 -1 2 1905 749 259 45 30 chr1 173066712 173066911 -24128521 + B3 SINE B2 15 216 0 2 1905 235 283 57 0 chr1 173066915 173066968 -24128464 + B1F2 SINE Alu 7 62 -87 2 1905 519 186 0 3 chr1 173067280 173067381 -24128051 - B1_Mur2 SINE Alu -12 108 10 2 1905 791 180 130 16 chr1 173067381 173067573 -24127859 + B3 SINE B2 3 216 0 2 1905 22 0 0 0 chr1 173067625 173067647 -24127785 + AT_rich Low_complexity Low_complexity 1 22 0 2 1905 1075 82 0 45 chr1 173067701 173067741 -24127691 - B1_Mm SINE Alu 0 147 77 2 1905 251 260 37 52 chr1 173067741 173067778 -24127654 - ORR1B1-int LTR MaLR -755 754 720 2 1905 2574 88 77 3 chr1 173067778 173068153 -24127279 + RLTR9D LTR ERVK 1 403 0 2 1905 1075 82 0 45 chr1 173068153 173068229 -24127203 - B1_Mm SINE Alu -71 76 1 2 1905 251 260 37 52 chr1 173068229 173068249 -24127183 - ORR1B1-int LTR MaLR -790 719 623 2 1905 723 256 62 6 chr1 173068258 173068435 -24126997 - B3 SINE B2 0 216 30 2 1905 1087 127 0 0 chr1 173068505 173068655 -24126777 + B1_Mur4 SINE Alu 1 150 0 2 1905 855 266 14 0 chr1 173069002 173069209 -24126223 + B3 SINE B2 1 210 -6 2 1905 194 161 0 35 chr1 173069295 173069332 -24126100 + T-rich Low_complexity Low_complexity 24 58 0 2 1905 1244 54 0 0 chr1 173069332 173069480 -24125952 - B1_Mus1 SINE Alu 0 148 1 2 1905 194 161 0 35 chr1 173069480 173069500 -24125932 + T-rich Low_complexity Low_complexity 4 23 0 2 1905 237 227 212 0 chr1 173069522 173069588 -24125844 + ID4_ SINE ID 3 82 -1 2 1905 881 102 80 0 chr1 173069623 173069760 -24125672 + B1_Mus1 SINE Alu 1 148 0 2 1905 210 171 0 0 chr1 173069763 173069798 -24125634 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1905 1124 189 19 9 chr1 173069808 173070022 -24125410 + B3 SINE B2 1 216 0 2 1905 343 236 14 0 chr1 173070091 173070163 -24125269 - RCHARR1 DNA MER1_type -592 382 310 2 1905 186 43 0 0 chr1 173070269 173070292 -24125140 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1905 344 181 0 12 chr1 173070294 173070378 -24125054 + GA-rich Low_complexity Low_complexity 3 85 0 2 1905 211 289 25 50 chr1 173070379 173070459 -24124973 + PB1D10 SINE Alu 40 117 0 2 1905 1243 14 7 0 chr1 173070515 173070657 -24124775 - B1_Mus2 SINE Alu -4 143 1 2 1905 4375 123 68 6 chr1 173070822 173071516 -24123916 + RMER19A LTR ERVK 1 737 0 2 1905 264 271 37 70 chr1 173071904 173072043 -24123389 + L1MC4 LINE L1 6627 6751 -1131 2 1905 306 295 26 9 chr1 173072043 173072156 -24123276 + L1MC4 LINE L1 6941 7055 -987 2 1905 403 314 0 16 chr1 173072204 173072215 -24123217 + ID SINE ID 77 80 -144 2 1905 357 336 26 26 chr1 173072215 173072331 -24123101 + PB1D10 SINE Alu 1 116 -1 2 1905 21 36 0 0 chr1 173072443 173072471 -24122961 + AT_rich Low_complexity Low_complexity 1 28 0 2 1905 413 290 72 51 chr1 173072471 173072609 -24122823 - RSINE1 SINE B4 -21 144 4 2 1905 588 206 19 0 chr1 173072659 173072766 -24122666 - ID_B1 SINE B4 -20 204 96 2 1905 344 277 16 40 chr1 173072766 173072779 -24122653 - B1_Mus1 SINE Alu -20 124 8 2 1905 712 116 48 40 chr1 173072790 173072916 -24122516 - B1_Mur4 SINE Alu -13 137 11 2 1905 1326 297 78 7 chr1 173072913 173073337 -24122095 - RCHARR1 DNA MER1_type -477 497 44 2 1905 1445 34 79 0 chr1 173073358 173073517 -24121915 + B2_Mm1a SINE B2 2 160 -33 2 1905 207 0 0 0 chr1 173073517 173073540 -24121892 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1905 1445 34 79 0 chr1 173073540 173073558 -24121874 + B2_Mm1a SINE B2 161 191 -2 2 1905 568 273 46 41 chr1 173073864 173074059 -24121373 - B3A SINE B2 0 198 3 2 1905 28 48 0 0 chr1 173074217 173074259 -24121173 + AT_rich Low_complexity Low_complexity 1 42 0 2 1905 795 230 86 0 chr1 173074264 173074451 -24120981 + B3 SINE B2 2 204 -12 2 1905 263 259 116 12 chr1 173074502 173074588 -24120844 + ID_B1 SINE B4 129 223 -1 2 1905 252 301 52 83 chr1 173074586 173074607 -24120825 - YREP_Mm Unknown Unknown -1498 314 256 2 1905 490 263 0 85 chr1 173074607 173074736 -24120696 + ID_B1 SINE B4 104 221 -3 2 1905 252 301 52 83 chr1 173074736 173074778 -24120654 - YREP_Mm Unknown Unknown -1498 255 129 2 1905 664 179 8 33 chr1 173075163 173075284 -24120148 + B1_Mur3 SINE Alu 10 127 -22 2 1905 1207 88 65 21 chr1 173075451 173075637 -24119795 + B2_Mm2 SINE B2 1 194 -1 2 1905 654 142 148 59 chr1 173075688 173075823 -24119609 - B1_Mur2 SINE Alu -1 148 2 2 1905 1027 122 0 0 chr1 173076034 173076181 -24119251 - B1_Mus2 SINE Alu 0 147 1 2 1905 332 250 40 0 chr1 173076228 173076304 -24119128 + ID4_ SINE ID 2 80 -3 2 1905 373 347 8 0 chr1 173076340 173076464 -24118968 + ID_B1 SINE B4 72 196 -28 2 1905 211 396 10 0 chr1 173076378 173076474 -24118958 + B1_Mus1 SINE Alu 31 127 -21 2 1905 312 266 17 5 chr1 173076630 173076714 -24118718 + RSINE1 SINE B4 1 84 -208 2 1905 1457 67 0 6 chr1 173076744 173076925 -24118507 + B2_Mm2 SINE B2 2 181 -14 2 1905 222 366 0 0 chr1 173076935 173077017 -24118415 + RSINE1 SINE B4 82 163 -2 2 1905 30 37 0 18 chr1 173077018 173077055 -24118377 + AT_rich Low_complexity Low_complexity 1 37 0 2 1905 667 155 19 168 chr1 173077055 173077264 -24118168 + B2_Mm1a SINE B2 2 179 -14 2 1905 30 37 0 18 chr1 173077264 173077281 -24118151 + AT_rich Low_complexity Low_complexity 1 17 0 2 1905 192 77 0 0 chr1 173077346 173077372 -24118060 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1905 1011 187 30 5 chr1 173077452 173077651 -24117781 + B3 SINE B2 3 206 -10 2 1905 538 221 35 17 chr1 173077686 173077801 -24117631 - RSINE1 SINE B4 -6 159 43 2 1905 388 266 86 31 chr1 173077795 173077923 -24117509 + B1F SINE Alu 14 148 -1 2 1905 255 31 0 0 chr1 173077927 173077959 -24117473 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1905 718 127 143 0 chr1 173078122 173078248 -24117184 + B1_Mur4 SINE Alu 1 144 -6 2 1905 312 267 212 15 chr1 173078783 173078920 -24116512 + RSINE1 SINE B4 2 165 0 2 1905 634 221 0 8 chr1 173078971 173079118 -24116314 - B1F SINE Alu -3 146 1 2 1905 612 289 59 0 chr1 173079118 173079300 -24116132 - MER2 DNA MER2_type -67 278 86 2 1905 238 167 32 32 chr1 173080869 173080931 -24114501 + T-rich Low_complexity Low_complexity 2 63 0 2 1905 274 228 35 0 chr1 173081204 173081261 -24114171 - ID4_ SINE ID -21 62 4 2 1905 308 288 0 0 chr1 173081893 173081959 -24113473 - L3 LINE CR1 -28 4461 4396 2 1905 356 268 39 0 chr1 173082022 173082137 -24113295 + PB1D10 SINE Alu 6 129 -21 2 1905 243 305 164 0 chr1 173082242 173082370 -24113062 + B1F SINE Alu 1 149 0 2 1905 258 241 34 67 chr1 173082282 173082371 -24113061 + ID_B1 SINE B4 138 223 -1 2 1905 860 245 16 31 chr1 173082412 173082606 -24112826 - B3 SINE B2 -25 191 1 2 1905 823 225 59 0 chr1 173082766 173082935 -24112497 + ID_B1 SINE B4 6 184 -40 2 1905 292 327 32 19 chr1 173083144 173083241 -24112191 + B1F2 SINE Alu 1 97 -20 2 1905 276 30 0 0 chr1 173083241 173083274 -24112158 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1905 734 50 0 10 chr1 173083276 173083376 -24112056 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 2 1905 223 369 8 66 chr1 173083376 173083397 -24112035 + PB1D10 SINE Alu 98 115 -2 2 1905 563 237 33 17 chr1 173083457 173083577 -24111855 + B3A SINE B2 1 122 -76 2 1905 618 181 110 0 chr1 173083702 173083789 -24111643 - B1_Mur2 SINE Alu -6 143 56 2 1905 576 0 0 0 chr1 173083789 173083853 -24111579 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1905 618 181 110 0 chr1 173083853 173083892 -24111540 - B1_Mur2 SINE Alu -94 55 4 2 1905 990 162 88 34 chr1 173084132 173084337 -24111095 + B3 SINE B2 1 216 0 2 1905 366 238 66 47 chr1 173084393 173084499 -24110933 - PB1D7 SINE Alu -1 119 12 2 1905 520 177 14 21 chr1 173087221 173087365 -24108067 + CT-rich Low_complexity Low_complexity 2 144 0 2 1905 261 254 30 99 chr1 173087698 173087829 -24107603 + MT2B LTR ERVL 143 264 -337 2 1905 853 159 8 0 chr1 173087721 173087853 -24107579 + B1_Mur2 SINE Alu 6 138 -11 2 1905 216 0 0 0 chr1 173087853 173087877 -24107555 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1905 359 267 23 0 chr1 173087964 173088050 -24107382 + PB1D10 SINE Alu 25 112 -5 2 1905 414 57 0 0 chr1 173088050 173088103 -24107329 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2 1905 343 258 0 97 chr1 173088176 173088279 -24107153 - AmnSINE1 SINE SINE -476 99 7 2 1905 386 298 0 21 chr1 173088189 173088285 -24107147 - 5S rRNA rRNA -27 94 1 2 1905 347 195 0 121 chr1 173089195 173089294 -24106138 + PB1D10 SINE Alu 11 97 -20 2 1905 393 244 14 144 chr1 173089331 173089470 -24105962 + ID_B1 SINE B4 104 224 0 2 1905 21 0 0 0 chr1 173090681 173090702 -24104730 + GC_rich Low_complexity Low_complexity 1 21 0 2 1905 257 365 59 48 chr1 173091527 173091714 -24103718 + MIRc SINE MIR 47 235 -33 2 1905 808 210 0 0 chr1 173091826 173091969 -24103463 + B3 SINE B2 70 212 -4 2 1905 551 316 5 53 chr1 173092020 173092184 -24103248 + ID_B1 SINE B4 76 223 -69 2 1905 439 236 70 5 chr1 173092342 173092453 -24102979 - B3A SINE B2 -76 119 4 3 1905 372 287 26 53 chr1 173092533 173092647 -24102785 + PB1D10 SINE Alu 7 117 0 3 1905 600 84 0 0 chr1 173092734 173092817 -24102615 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 1905 312 277 10 45 chr1 173092846 173092947 -24102485 + B1F1 SINE Alu 1 98 -22 3 1905 261 335 92 43 chr1 173093145 173093329 -24102103 + L2 LINE L2 1826 2018 -1401 3 1905 326 61 0 20 chr1 173093352 173093402 -24102030 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1905 266 270 16 0 chr1 173093411 173093474 -24101958 - ID4_ SINE ID -19 64 1 3 1905 223 375 70 8 chr1 173093474 173093603 -24101829 + L2 LINE L2 2015 2151 -1268 3 1905 1395 87 0 16 chr1 173093640 173093828 -24101604 - B2_Mm2 SINE B2 -9 186 2 3 1905 481 244 8 42 chr1 173093995 173094115 -24101317 - B3 SINE B2 -6 210 95 3 1905 397 240 28 7 chr1 173094187 173094291 -24101141 - B1F1 SINE Alu -1 148 19 3 1905 251 318 0 15 chr1 173094491 173094558 -24100874 - MER20B DNA MER1_type -712 71 6 3 1905 426 149 97 0 chr1 173094588 173094673 -24100759 - B1_Mus2 SINE Alu -12 135 16 3 1905 502 297 93 44 chr1 173095083 173095232 -24100200 + MIR SINE MIR 20 181 -81 3 1905 804 186 43 0 chr1 173095232 173095372 -24100060 + B1_Mur4 SINE Alu 5 150 0 3 1905 502 297 93 44 chr1 173095372 173095426 -24100006 + MIR SINE MIR 182 233 -29 3 1905 312 283 115 0 chr1 173095603 173095719 -24099713 - MIRm SINE MIR -37 171 48 3 1905 405 192 115 122 chr1 173096591 173096667 -24098765 - MurERV4-int LTR ERVK -5113 147 81 3 1905 1397 80 0 26 chr1 173096667 173096859 -24098573 - B2_Mm2 SINE B2 -8 187 1 3 1905 405 192 115 122 chr1 173096859 173096930 -24098502 - MurERV4-int LTR ERVK -5180 80 1 3 1905 3035 144 60 58 chr1 173096930 173097198 -24098234 - RMER4B LTR ERVK 0 585 327 3 1905 1034 130 6 0 chr1 173097198 173097375 -24098057 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 1905 3035 144 60 58 chr1 173097375 173097690 -24097742 - RMER4B LTR ERVK -259 326 1 3 1905 198 156 0 0 chr1 173098434 173098479 -24096953 + CT-rich Low_complexity Low_complexity 2 46 0 3 1905 428 262 226 13 chr1 173098480 173098658 -24096774 - B3A SINE B2 -11 205 1 3 1905 230 315 0 0 chr1 173098794 173098848 -24096584 + MER21B LTR ERV1 37 90 -773 3 1905 643 219 20 56 chr1 173098858 173099014 -24096418 - B1F1 SINE Alu -1 310 11 3 1905 280 253 0 132 chr1 173098940 173099031 -24096401 - MT2B LTR ERVL -362 239 161 3 1905 552 303 68 100 chr1 173099076 173099355 -24096077 + MER21B LTR ERV1 178 447 -416 3 1905 254 355 118 24 chr1 173099483 173099610 -24095822 + MER21B LTR ERV1 466 604 -259 3 1905 297 193 17 17 chr1 173099761 173099819 -24095613 - ID_B1 SINE B4 -10 214 157 3 1905 415 186 0 0 chr1 173100178 173100248 -24095184 - ID_B1 SINE B4 -63 161 92 3 1905 1207 99 22 6 chr1 173100654 173100837 -24094595 + B2_Mm2 SINE B2 2 187 -8 3 1905 233 170 0 0 chr1 173100850 173100897 -24094535 + Lx5 LINE L1 7000 7046 -4 3 1905 534 16 0 0 chr1 173101123 173101186 -24094246 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1905 471 222 156 16 chr1 173101187 173101315 -24094117 - B3A SINE B2 -51 147 2 3 1905 855 203 11 53 chr1 173101870 173102057 -24093375 + B3 SINE B2 37 215 -1 3 1905 1001 236 25 0 chr1 173102061 173102264 -24093168 + B3 SINE B2 2 209 -7 3 1905 460 290 8 22 chr1 173102373 173102507 -24092925 + B1F SINE Alu 5 136 -13 3 1905 1098 89 7 7 chr1 173102522 173102669 -24092763 - B1_Mur3 SINE Alu -2 147 1 3 1905 459 100 0 0 chr1 173103289 173103359 -24092073 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1905 197 0 71 0 chr1 173103850 173103878 -24091554 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1905 783 148 44 15 chr1 173103906 173104043 -24091389 - B1_Mur1 SINE Alu 0 149 9 3 1905 219 69 0 0 chr1 173104772 173104801 -24090631 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 3 1905 585 258 62 21 chr1 173105040 173105234 -24090198 + B3 SINE B2 2 203 -13 3 1905 261 0 0 0 chr1 173105281 173105310 -24090122 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3 1905 625 227 7 54 chr1 173105314 173105463 -24089969 - RSINE1 SINE B4 -21 144 3 3 1905 330 316 0 20 chr1 173105948 173106048 -24089384 + B1_Mm SINE Alu 1 98 -49 3 1905 257 360 79 8 chr1 173106048 173106073 -24089359 + B4 SINE B4 86 219 -73 3 1905 447 248 0 0 chr1 173106316 173106437 -24088995 + CT-rich Low_complexity Low_complexity 3 123 0 3 1905 249 333 23 0 chr1 173106462 173106501 -24088931 - BC1_Mm scRNA scRNA -37 115 27 3 1905 299 208 0 0 chr1 173106501 173106549 -24088883 - ID SINE ID -149 75 28 3 1905 241 301 228 21 chr1 173106549 173106742 -24088690 - L2a LINE L2 -284 3142 2910 3 1905 520 287 88 64 chr1 173106721 173107049 -24088383 - L2a LINE L2 -662 2757 2422 3 1905 279 301 74 81 chr1 173107051 173107072 -24088360 - B4 SINE B4 -77 215 144 3 1905 346 219 28 111 chr1 173107072 173107180 -24088252 - PB1D10 SINE Alu -14 103 5 3 1905 279 301 74 81 chr1 173107180 173107199 -24088233 - B4 SINE B4 -77 143 69 3 1905 327 232 45 7 chr1 173107226 173107302 -24088130 - MTEa LTR MaLR -82 297 223 3 1905 926 130 7 33 chr1 173107328 173107479 -24087953 - B1_Mm SINE Alu 0 147 1 3 1905 770 316 114 7 chr1 173107747 173108168 -24087264 - L2a LINE L2 -1651 1768 1303 3 1905 1672 179 82 67 chr1 173108208 173108533 -24086899 - MTD LTR MaLR -24 395 59 3 1905 1173 68 0 7 chr1 173108533 173108681 -24086751 - B1_Mus1 SINE Alu -1 147 1 3 1905 1672 179 82 67 chr1 173108681 173108744 -24086688 - MTD LTR MaLR -361 58 1 3 1905 1383 89 11 0 chr1 173109079 173109269 -24086163 + B2_Mm1t SINE B2 1 192 -1 3 1905 236 250 15 15 chr1 173109286 173109351 -24086081 + B1_Mus1 SINE Alu 10 74 -74 3 1905 844 152 36 7 chr1 173109507 173109646 -24085786 - B1_Mur3 SINE Alu -5 144 2 3 1905 360 262 80 80 chr1 173109697 173109859 -24085573 - RSINE1 SINE B4 -1 164 3 3 1905 849 270 20 76 chr1 173109965 173110266 -24085166 + B4 SINE B4 2 285 -7 3 1905 860 173 58 0 chr1 173110367 173110506 -24084926 + B1_Mur1 SINE Alu 1 147 -2 3 1905 244 257 67 13 chr1 173110529 173110604 -24084828 + ID4_ SINE ID 5 83 0 3 1905 1166 173 55 109 chr1 173110619 173110764 -24084668 + ORR1C2 LTR MaLR 1 189 -195 3 1905 1059 94 0 0 chr1 173110764 173110944 -24084488 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1905 1166 171 52 109 chr1 173110944 173111074 -24084358 + ORR1C2 LTR MaLR 172 284 -83 3 1905 1936 118 53 103 chr1 173111074 173111451 -24083981 - ORR1B1 LTR MaLR 0 394 37 3 1905 534 65 0 0 chr1 173111451 173111526 -24083906 + ORR1C2 LTR MaLR 288 369 -15 3 1905 823 278 152 16 chr1 173111603 173111859 -24083573 + B4 SINE B4 2 292 0 3 1905 1424 77 6 0 chr1 173111943 173112125 -24083307 + B2_Mm1a SINE B2 2 184 -9 3 1905 320 330 0 42 chr1 173112139 173112234 -24083198 + PB1D10 SINE Alu 2 92 -25 3 1905 274 345 25 68 chr1 173112234 173112247 -24083185 + ID_B1 SINE B4 113 182 -42 3 1905 625 239 32 32 chr1 173112841 173112997 -24082435 + MTD LTR MaLR 1 156 -263 3 1905 1469 176 129 19 chr1 173113003 173113328 -24082104 - ORR1D1 LTR MaLR -4 370 10 3 1905 941 252 40 144 chr1 173113330 173113683 -24081749 + ORR1D1 LTR MaLR 54 369 -5 3 1905 1008 129 139 40 chr1 173114530 173114732 -24080700 - URR1B DNA MER1_type -2 223 2 3 1905 432 343 43 33 chr1 173114819 173115030 -24080402 - MIR SINE MIR -27 235 23 3 1905 892 74 185 0 chr1 173115031 173115166 -24080266 + B2_Mm2 SINE B2 2 161 -34 3 1905 342 67 0 0 chr1 173115166 173115211 -24080221 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 1905 313 183 30 0 chr1 173116545 173116620 -24078812 + L1MA4 LINE L1 5859 5935 -356 3 1905 454 274 36 36 chr1 173117238 173117378 -24078054 - B1F SINE Alu 0 149 10 3 1905 778 255 75 0 chr1 173117415 173117615 -24077817 + B3 SINE B2 1 215 -1 3 1905 1092 50 43 7 chr1 173117636 173117776 -24077656 - B1_Mus1 SINE Alu -1 147 3 3 1905 210 237 0 0 chr1 173117811 173117849 -24077583 + B3 SINE B2 1 38 -178 3 1905 523 157 224 32 chr1 173117852 173117977 -24077455 + B1_Mur2 SINE Alu 1 149 0 3 1905 615 144 127 3 chr1 173117983 173118118 -24077314 + B1_Mur4 SINE Alu 3 149 0 3 1905 290 246 0 16 chr1 173118170 173118232 -24077200 + PB1D10 SINE Alu 56 116 -1 3 1905 542 160 19 304 chr1 173118851 173119058 -24076374 + B1_Mur4 SINE Alu 2 149 -1 3 1905 264 316 120 20 chr1 173120163 173120263 -24075169 + B1F SINE Alu 9 118 -31 3 1905 1252 76 59 16 chr1 173120386 173120573 -24074859 - B2_Mm2 SINE B2 0 195 1 3 1905 398 290 84 0 chr1 173120586 173120693 -24074739 - PB1D10 SINE Alu 0 117 2 3 1905 498 269 115 20 chr1 173120861 173121009 -24074423 - ID_B1 SINE B4 -16 208 47 3 1905 434 252 111 43 chr1 173121007 173121169 -24074263 - ID_B1 SINE B4 -25 267 90 3 1905 219 355 0 16 chr1 173121226 173121289 -24074143 - ID4_ SINE ID -6 77 16 3 1905 387 0 0 0 chr1 173121301 173121344 -24074088 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1905 344 346 0 0 chr1 173121530 173121637 -24073795 + PB1D10 SINE Alu 1 107 -10 3 1905 281 291 0 60 chr1 173121642 173121726 -24073706 + ID_B1 SINE B4 77 155 -69 3 1905 24 0 0 0 chr1 173121747 173121771 -24073661 + AT_rich Low_complexity Low_complexity 1 24 0 3 1905 295 284 12 24 chr1 173121970 173122053 -24073379 + MIR3 SINE MIR 114 195 -13 3 1905 1076 109 51 0 chr1 173122191 173122347 -24073085 + B2_Mm2 SINE B2 2 165 -30 3 1905 31 44 0 0 chr1 173122857 173122902 -24072530 + AT_rich Low_complexity Low_complexity 1 45 0 3 1905 307 132 0 29 chr1 173124863 173124933 -24070499 + CT-rich Low_complexity Low_complexity 2 69 0 3 1905 315 71 0 0 chr1 173125031 173125073 -24070359 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1905 547 270 107 6 chr1 173125092 173125270 -24070162 - MIRb SINE MIR -19 249 52 3 1905 180 0 0 0 chr1 173125655 173125675 -24069757 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1905 236 251 19 6 chr1 173126610 173126674 -24068758 - B3 SINE B2 -117 78 16 3 1905 435 326 75 35 chr1 173127294 173127520 -24067912 - MER58B DNA MER1_type -1 340 106 3 1905 329 179 119 0 chr1 173127526 173127593 -24067839 + B3 SINE B2 1 75 -141 4 1905 2007 116 70 38 chr1 173127651 173127916 -24067516 + ORR1A2 LTR MaLR 1 287 -40 4 1905 1272 82 55 6 chr1 173127916 173128099 -24067333 + B2_Mm2 SINE B2 1 192 -3 4 1905 2007 116 70 38 chr1 173128099 173128148 -24067284 + ORR1A2 LTR MaLR 288 325 -2 4 1905 11023 116 110 11 chr1 173128150 173129935 -24065497 + ORR1A2-int LTR MaLR 1 1963 0 4 1905 2213 135 6 0 chr1 173129935 173130260 -24065172 + ORR1A2 LTR MaLR 1 327 0 4 1905 680 224 0 47 chr1 173130399 173130549 -24064883 + B1_Mur2 SINE Alu 2 144 -5 4 1905 747 122 7 21 chr1 173130549 173130691 -24064741 + GA-rich Low_complexity Low_complexity 1 140 0 4 1905 604 192 138 19 chr1 173130705 173130864 -24064568 - B3 SINE B2 -2 214 37 4 1905 1174 197 47 0 chr1 173130907 173131100 -24064332 - B3 SINE B2 0 216 15 4 1905 546 257 50 150 chr1 173131105 173131325 -24064107 - B3A SINE B2 0 198 1 4 1905 21 57 0 0 chr1 173131398 173131433 -24063999 + AT_rich Low_complexity Low_complexity 1 35 0 4 1905 208 306 48 0 chr1 173131520 173131582 -24063850 - L2b LINE L2 -208 3167 3103 4 1905 635 269 12 30 chr1 173131750 173131915 -24063517 + RSINE1 SINE B4 4 165 0 4 1905 317 283 130 0 chr1 173132114 173132206 -24063226 + PB1D10 SINE Alu 14 117 0 4 1905 1140 83 0 43 chr1 173132209 173132372 -24063060 - B2_Mm2 SINE B2 -39 156 1 4 1905 899 90 90 8 chr1 173132402 173132536 -24062896 + B1_Mus1 SINE Alu 3 147 -1 4 1905 2530 123 71 190 chr1 173132635 173133299 -24062133 + RMER4B LTR ERVK 1 585 0 4 1905 435 261 0 0 chr1 173133370 173133458 -24061974 + PB1D9 SINE Alu 21 108 -12 4 1905 1219 48 0 7 chr1 173133532 173133679 -24061753 + B1_Mm SINE Alu 2 147 0 4 1905 374 317 62 48 chr1 173133713 173133859 -24061573 + B1_Mur1 SINE Alu 1 148 -1 4 1905 21 0 0 0 chr1 173134212 173134233 -24061199 + GC_rich Low_complexity Low_complexity 1 21 0 4 1905 185 250 21 0 chr1 173134760 173134808 -24060624 + L2a LINE L2 3376 3424 -2 4 1905 880 252 5 32 chr1 173134894 173135115 -24060317 - B3 SINE B2 0 216 2 4 1905 422 247 0 0 chr1 173135211 173135288 -24060144 + B1F SINE Alu 3 79 -70 4 1905 500 259 84 0 chr1 173135253 173135384 -24060048 - B3A SINE B2 -53 145 4 4 1905 230 146 0 40 chr1 173135433 173135483 -24059949 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 1905 534 16 0 0 chr1 173135498 173135561 -24059871 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 4 1905 1087 218 0 23 chr1 173135654 173135870 -24059562 + B3 SINE B2 1 211 -5 4 1905 756 237 16 53 chr1 173135918 173136105 -24059327 + B3A SINE B2 4 183 -15 4 1905 31 26 0 0 chr1 173136122 173136160 -24059272 + AT_rich Low_complexity Low_complexity 1 38 0 4 1905 545 345 55 26 chr1 173136503 173136774 -24058658 - L2b LINE L2 -470 2949 2671 4 1905 202 327 61 0 chr1 173136923 173137024 -24058408 - MIRb SINE MIR -10 252 149 4 1905 610 248 38 0 chr1 173137299 173137432 -24058000 + B1F2 SINE Alu 3 140 -9 4 1905 1545 63 0 0 chr1 173137469 173137660 -24057772 + B2_Mm1t SINE B2 1 191 -2 4 1905 335 71 0 0 chr1 173137790 173137832 -24057600 - ORR1C1 LTR MaLR 0 378 337 4 1905 1641 32 5 0 chr1 173138016 173138206 -24057226 + B2_Mm1a SINE B2 1 191 -2 4 1905 2054 138 43 3 chr1 173138511 173138838 -24056594 - ORR1C1 LTR MaLR -32 346 7 4 1905 432 0 0 0 chr1 173138991 173139039 -24056393 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 4 1905 565 184 19 28 chr1 173139040 173139146 -24056286 - B1_Mur4 SINE Alu -14 136 32 4 1905 1079 120 11 0 chr1 173139178 173139353 -24056079 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 4 1905 585 0 0 0 chr1 173139353 173139418 -24056014 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 4 1905 710 191 44 38 chr1 173139469 173139627 -24055805 + MTE2a LTR MaLR 221 379 0 4 1905 631 279 18 18 chr1 173140060 173140224 -24055208 - RSINE1 SINE B4 0 165 2 4 1905 335 304 43 0 chr1 173140256 173140348 -24055084 + PB1D10 SINE Alu 6 101 -16 4 1905 628 182 12 0 chr1 173140681 173140805 -24054627 + B1_Mus1 SINE Alu 17 148 -2 4 1905 701 195 214 22 chr1 173140847 173140976 -24054456 + B3 SINE B2 4 152 -64 4 1905 297 0 0 0 chr1 173140976 173141009 -24054423 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1905 317 24 0 23 chr1 173141009 173141051 -24054381 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1905 701 195 214 22 chr1 173141051 173141098 -24054334 + B3 SINE B2 153 214 -2 4 1905 22 35 0 0 chr1 173141267 173141296 -24054136 + AT_rich Low_complexity Low_complexity 1 29 0 4 1905 1146 77 0 0 chr1 173141632 173141775 -24053657 + B1_Mus1 SINE Alu 1 143 -5 4 1905 209 108 0 26 chr1 173141775 173141813 -24053619 + (GGA)n Simple_repeat Simple_repeat 3 39 0 4 1905 529 126 11 11 chr1 173141833 173141921 -24053511 + RMER19C LTR ERVK 1 88 -523 4 1905 570 209 166 31 chr1 173141949 173142142 -24053290 + MTC-int LTR MaLR 3 221 -1037 4 1905 3142 164 200 81 chr1 173142142 173142946 -24052486 + RMER19B LTR ERVK 1 900 -2 4 1905 434 229 9 44 chr1 173142946 173143048 -24052384 + MTC-int LTR MaLR 215 312 -946 4 1905 761 252 14 0 chr1 173143139 173143278 -24052154 - RSINE1 SINE B4 -23 142 2 4 1905 715 259 137 19 chr1 173143278 173143480 -24051952 - B4 SINE B4 -66 226 1 4 1905 556 305 76 92 chr1 173143595 173143779 -24051653 + B3 SINE B2 15 195 0 4 1905 377 331 125 36 chr1 173145232 173145348 -24050084 + L2a LINE L2 2751 2885 -534 4 1905 908 204 94 30 chr1 173145348 173145550 -24049882 - B3 SINE B2 -1 215 1 4 1905 444 299 78 39 chr1 173145550 173145772 -24049660 + L2a LINE L2 2886 3116 -310 4 1905 234 339 110 0 chr1 173145858 173145985 -24049447 - MIRb SINE MIR -125 143 3 4 1906 217 293 29 124 chr1 173147017 173147122 -24048310 - B1_Mur3 SINE Alu -27 122 28 4 1906 751 56 19 2 chr1 173153157 173153273 -24042159 + B1_Mm SINE Alu 16 139 -10 4 1906 672 173 0 148 chr1 173153525 173153674 -24041758 + B2_Mm2 SINE B2 2 128 -67 4 1906 252 0 0 0 chr1 173153704 173153732 -24041700 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1906 450 0 0 0 chr1 173153734 173153784 -24041648 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1906 336 180 459 0 chr1 173153784 173153906 -24041526 + B3 SINE B2 33 210 -6 4 1906 480 18 0 0 chr1 173154391 173154448 -24040984 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1906 740 22 0 21 chr1 173154581 173154676 -24040756 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 4 1906 572 258 70 0 chr1 173154676 173154804 -24040628 - B1_Mur3 SINE Alu -12 137 1 4 1906 1818 107 188 3 chr1 173156960 173157269 -24038163 - RLTR9A LTR ERVK 0 368 3 4 1906 602 223 18 65 chr1 173157299 173157339 -24038093 + ID_B1 SINE B4 52 211 -13 4 1906 946 87 8 8 chr1 173157339 173157467 -24037965 + B1_Mur4 SINE Alu 10 137 -13 4 1906 198 0 0 0 chr1 173157469 173157491 -24037941 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 1906 499 297 33 17 chr1 173157492 173157612 -24037820 + RSINE1 SINE B4 31 152 -13 4 1906 21 0 0 0 chr1 173157617 173157638 -24037794 + AT_rich Low_complexity Low_complexity 1 21 0 4 1906 350 253 24 24 chr1 173157660 173157745 -24037687 + RSINE1 SINE B4 2 86 -79 4 1906 211 359 19 19 chr1 173157745 173157765 -24037667 + B2_Mm2 SINE B2 1 105 -90 4 1906 27 0 0 0 chr1 173157784 173157811 -24037621 + AT_rich Low_complexity Low_complexity 1 27 0 4 1906 302 309 163 26 chr1 173157813 173157826 -24037606 + B4A SINE B4 75 131 -161 4 1906 524 291 8 0 chr1 173157826 173157943 -24037489 + PB1 SINE Alu 7 124 -3 4 1906 302 309 163 26 chr1 173157943 173157966 -24037466 + B4A SINE B4 132 248 -44 4 1906 402 277 52 20 chr1 173158138 173158277 -24037155 + B1F1 SINE Alu 3 147 -2 4 1906 643 185 16 40 chr1 173158279 173158403 -24037029 + B1_Mur1 SINE Alu 28 148 -1 4 1906 200 135 0 26 chr1 173158488 173158526 -24036906 + A-rich Low_complexity Low_complexity 2 38 0 4 1906 286 154 0 0 chr1 173158724 173158776 -24036656 + G-rich Low_complexity Low_complexity 2 53 0 4 1906 1194 61 0 13 chr1 173159308 173159457 -24035975 + B1_Mus2 SINE Alu 1 147 0 4 1906 2952 146 61 6 chr1 173160424 173160913 -24034519 + RMER20A LTR ERVK 1 516 0 4 1906 1057 83 159 12 chr1 173161485 173161500 -24033932 - B2_Mm2 SINE B2 0 195 181 4 1906 1181 106 0 6 chr1 173161500 173161681 -24033751 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1906 1057 83 159 12 chr1 173161681 173161835 -24033597 - B2_Mm2 SINE B2 -15 180 1 4 1906 240 111 0 0 chr1 173162077 173162113 -24033319 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1906 598 153 98 9 chr1 173162569 173162681 -24032751 + B1F SINE Alu 24 145 -4 4 1906 842 110 16 16 chr1 173162686 173162815 -24032617 + B1_Mus1 SINE Alu 10 138 -10 4 1906 351 0 0 0 chr1 173162819 173162858 -24032574 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1906 460 225 12 112 chr1 173162858 173162875 -24032557 + ID_B1 SINE B4 215 224 0 4 1906 279 299 110 30 chr1 173162905 173163005 -24032427 + PB1D10 SINE Alu 1 108 -9 4 1906 416 339 52 16 chr1 173163235 173163427 -24032005 - MIR SINE MIR -44 218 20 4 1906 239 304 12 148 chr1 173163462 173163624 -24031808 - YREP_Mm Unknown Unknown -1451 361 222 4 1906 630 234 0 8 chr1 173163529 173163654 -24031778 + ID_B1 SINE B4 83 206 -18 4 1906 300 111 0 0 chr1 173164060 173164114 -24031318 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1906 463 221 155 16 chr1 173165537 173165666 -24029766 + B1_Mur1 SINE Alu 2 148 -1 4 1906 494 288 65 0 chr1 173165693 173165832 -24029600 + B1F SINE Alu 1 148 -1 4 1906 542 271 35 7 chr1 173165857 173165998 -24029434 + B1F SINE Alu 1 145 -4 4 1906 707 289 5 62 chr1 173166000 173166210 -24029222 + B3A SINE B2 1 198 0 4 1906 1190 44 0 0 chr1 173166214 173166349 -24029083 + B1_Mus1 SINE Alu 1 135 -13 4 1906 333 0 0 0 chr1 173166349 173166386 -24029046 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 1906 934 139 0 0 chr1 173166880 173167017 -24028415 + B1_Mus1 SINE Alu 11 147 -1 5 1906 425 210 134 89 chr1 173169059 173169216 -24026216 + RSINE1 SINE B4 2 165 0 5 1906 308 304 83 18 chr1 173169693 173169875 -24025557 - MER63B DNA AcHobo -15 421 237 5 1906 482 216 8 0 chr1 173169862 173169968 -24025464 + B1_Mur2 SINE Alu 38 147 0 5 1906 234 116 0 0 chr1 173169988 173170031 -24025401 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1906 195 69 0 0 chr1 173170504 173170533 -24024899 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1906 1158 159 72 0 chr1 173171452 173171660 -24023772 + URR1B DNA MER1_type 3 225 0 5 1906 327 262 146 8 chr1 173171745 173171868 -24023564 - PB1 SINE Alu -7 142 3 5 1906 607 238 20 34 chr1 173171874 173171885 -24023547 - B1_Mur1 SINE Alu -2 147 138 5 1906 180 0 0 0 chr1 173171885 173171905 -24023527 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 5 1906 607 238 20 34 chr1 173171905 173172041 -24023391 - B1_Mur1 SINE Alu -12 137 2 5 1906 729 216 69 44 chr1 173172051 173172087 -24023345 - B3 SINE B2 -2 214 185 5 1906 1998 127 125 11 chr1 173172087 173172454 -24022978 - RLTR9E LTR ERVK 0 409 1 5 1906 729 216 69 44 chr1 173172454 173172620 -24022812 - B3 SINE B2 -32 184 7 5 1906 330 217 29 0 chr1 173172696 173172765 -24022667 + PB1D9 SINE Alu 7 77 -43 5 1906 293 247 22 76 chr1 173172765 173172778 -24022654 + MT2B LTR ERVL 193 246 -355 5 1906 584 230 192 78 chr1 173172811 173173004 -24022428 - ID_B1 SINE B4 -8 216 2 5 1906 700 214 7 0 chr1 173173028 173173168 -24022264 - B1_Mm SINE Alu 0 147 7 5 1906 346 231 200 100 chr1 173173199 173173329 -24022103 + B1_Mur1 SINE Alu 1 143 -6 5 1906 220 236 17 68 chr1 173173437 173173496 -24021936 + PB1D9 SINE Alu 2 57 -63 5 1906 925 170 0 0 chr1 173173561 173173702 -24021730 + B1_Mur2 SINE Alu 1 141 -8 5 1906 615 276 16 28 chr1 173173763 173173950 -24021482 + B3 SINE B2 2 181 -14 5 1906 689 151 158 62 chr1 173173950 173174112 -24021320 + B2_Mm2 SINE B2 2 181 -14 5 1906 1228 68 0 0 chr1 173174112 173174259 -24021173 + B1_Mus1 SINE Alu 2 148 0 5 1906 689 151 158 62 chr1 173174259 173174273 -24021159 + B2_Mm2 SINE B2 182 195 0 5 1906 452 284 40 80 chr1 173174273 173174284 -24021148 + B2_Mm2 SINE B2 182 192 -3 5 1906 209 155 17 0 chr1 173174316 173174374 -24021058 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1906 325 157 17 252 chr1 173174381 173174500 -24020932 + B3A SINE B2 2 92 -106 5 1906 245 319 52 73 chr1 173174615 173174853 -24020579 + RLTR15 LTR ERVK 48 271 -263 5 1906 484 271 0 36 chr1 173174923 173175061 -24020371 + B3 SINE B2 84 216 0 5 1906 282 29 0 0 chr1 173175303 173175338 -24020094 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1906 804 188 20 13 chr1 173175353 173175504 -24019928 - B3 SINE B2 -57 159 8 5 1906 2486 153 53 37 chr1 173175550 173176006 -24019426 + RMER4A LTR ERVK 1 463 -3 5 1906 991 130 7 0 chr1 173176015 173176161 -24019271 + B1_Mus1 SINE Alu 1 147 -1 5 1906 635 183 111 0 chr1 173176411 173176564 -24018868 - Lx9 LINE L1 -7 7637 7468 5 1906 372 22 0 0 chr1 173179313 173179358 -24016074 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1906 279 0 0 0 chr1 173179362 173179393 -24016039 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1906 369 0 0 0 chr1 173179502 173179543 -24015889 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1906 215 222 0 0 chr1 173179745 173179790 -24015642 + GA-rich Low_complexity Low_complexity 1 45 0 5 1906 333 0 0 0 chr1 173180208 173180245 -24015187 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1906 227 238 54 40 chr1 173180574 173180635 -24014797 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 5 1906 189 0 0 0 chr1 173180635 173180656 -24014776 + (GGA)n Simple_repeat Simple_repeat 3 23 0 5 1906 227 238 54 40 chr1 173180656 173180743 -24014689 + (CAGAGA)n Simple_repeat Simple_repeat 1 90 0 5 1906 202 250 0 37 chr1 173182153 173182207 -24013225 + CT-rich Low_complexity Low_complexity 3 54 0 5 1906 1040 95 0 0 chr1 173183541 173183678 -24011754 - B1_Mus1 SINE Alu -11 137 1 5 1906 734 204 101 11 chr1 173184545 173184723 -24010709 - B3A SINE B2 -4 194 1 5 1906 704 187 66 22 chr1 173184765 173184902 -24010530 + B1_Mur2 SINE Alu 5 147 -2 5 1906 849 110 0 0 chr1 173184903 173185030 -24010402 + (GAAA)n Simple_repeat Simple_repeat 4 130 0 5 1906 489 233 33 41 chr1 173185050 173185171 -24010261 + B1F1 SINE Alu 10 129 -20 5 1906 266 246 0 0 chr1 173185191 173185248 -24010184 + RSINE1 SINE B4 3 59 -106 5 1906 1337 101 32 5 chr1 173185360 173185550 -24009882 + B2_Mm2 SINE B2 1 195 0 5 1906 1956 165 188 7 chr1 173185564 173186010 -24009422 - RLTR11A LTR ERVK -1 527 1 5 1906 300 111 0 0 chr1 173186031 173186076 -24009356 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 5 1906 196 333 65 24 chr1 173186165 173186288 -24009144 + MIR SINE MIR 97 224 -38 5 1906 245 236 169 65 chr1 173188084 173188291 -24007141 - L2b LINE L2 -94 3281 3060 5 1906 3334 50 10 2 chr1 173188388 173188785 -24006647 - MTB LTR MaLR 0 400 1 5 1906 312 70 0 0 chr1 173189737 173189780 -24005652 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1906 386 230 142 8 chr1 173189955 173190082 -24005350 + MIRb SINE MIR 117 260 -8 5 1906 247 310 58 25 chr1 173190403 173190583 -24004849 + MIRc SINE MIR 4 183 -85 5 1906 378 290 10 29 chr1 173191824 173191927 -24003505 + ID_B1 SINE B4 118 218 -6 5 1906 1445 70 38 0 chr1 173191931 173192116 -24003316 + B2_Mm2 SINE B2 1 192 -3 5 1906 225 0 0 0 chr1 173192116 173192141 -24003291 + (GGA)n Simple_repeat Simple_repeat 2 26 0 5 1906 1300 179 9 5 chr1 173192155 173192368 -24003064 + B3 SINE B2 3 216 0 5 1906 221 139 23 0 chr1 173192413 173192456 -24002976 + (ATTG)n Simple_repeat Simple_repeat 3 46 0 5 1906 986 0 9 0 chr1 173193201 173193315 -24002117 + (TC)n Simple_repeat Simple_repeat 2 116 0 5 1906 234 0 0 0 chr1 173193784 173193810 -24001622 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1906 243 279 0 25 chr1 173193871 173193952 -24001480 + GA-rich Low_complexity Low_complexity 4 82 0 5 1906 424 266 0 52 chr1 173193956 173194071 -24001361 + PB1D7 SINE Alu 2 110 -10 5 1906 749 134 88 15 chr1 173194071 173194206 -24001226 + B1_Mus2 SINE Alu 1 146 -1 5 1906 189 0 0 0 chr1 173194218 173194239 -24001193 + (CAAAC)n Simple_repeat Simple_repeat 3 23 0 5 1906 971 133 88 44 chr1 173194342 173194523 -24000909 - B2_Mm2 SINE B2 -5 190 2 5 1906 328 311 58 15 chr1 173194532 173194658 -24000774 + B4 SINE B4 104 234 -58 5 1906 1452 44 0 0 chr1 173194658 173194838 -24000594 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1906 1440 46 29 0 chr1 173194860 173195035 -24000397 + B2_Mm1a SINE B2 1 180 -13 5 1906 618 51 0 0 chr1 173195035 173195113 -24000319 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5 1906 483 239 14 78 chr1 173195173 173195314 -24000118 + B3 SINE B2 83 214 -2 5 1906 990 194 120 5 chr1 173195323 173195515 -23999917 + B3 SINE B2 2 215 -1 5 1906 1454 154 16 12 chr1 173195588 173195824 -23999608 - RMER4B LTR ERVK -9 576 340 5 1906 1149 123 0 0 chr1 173195824 173196003 -23999429 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 1906 1454 154 16 12 chr1 173196003 173196023 -23999409 - RMER4B LTR ERVK -246 339 319 5 1906 458 191 0 31 chr1 173196028 173196158 -23999274 + CT-rich Low_complexity Low_complexity 5 130 0 5 1906 1760 111 65 16 chr1 173196159 173196480 -23998952 - RMER4B LTR ERVK -246 339 3 5 1906 2740 156 89 83 chr1 173196494 173197075 -23998357 - RMER4B LTR ERVK 0 585 1 5 1906 245 29 0 29 chr1 173197126 173197161 -23998271 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 1906 288 200 0 18 chr1 173197200 173197256 -23998176 + B1F SINE Alu 2 56 -93 5 1906 302 278 73 18 chr1 173197321 173197431 -23998001 + PB1D10 SINE Alu 2 117 0 5 1906 327 290 37 88 chr1 173197632 173197768 -23997664 + RSINE1 SINE B4 2 130 -35 5 1906 851 17 16 65 chr1 173197871 173197994 -23997438 + B1_Mm SINE Alu 23 139 -8 5 1906 587 239 158 75 chr1 173198014 173198044 -23997388 - MER31B LTR ERV1 -187 279 260 5 1906 4314 133 22 50 chr1 173198044 173198336 -23997096 + RMER6A LTR ERVK 4 283 -473 5 1906 1654 21 5 5 chr1 173198336 173198528 -23996904 + B2_Mm1a SINE B2 2 193 0 5 1906 4314 133 22 50 chr1 173198528 173199008 -23996424 + RMER6A LTR ERVK 284 754 -2 5 1906 587 239 158 75 chr1 173199008 173199230 -23996202 - MER31B LTR ERV1 -207 259 6 5 1906 200 97 0 31 chr1 173199431 173199463 -23995969 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 1906 1234 61 0 0 chr1 173199463 173199610 -23995822 - B1_Mus1 SINE Alu 0 148 2 5 1906 237 65 0 0 chr1 173201732 173201763 -23993669 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1906 1097 175 18 66 chr1 173203146 173203372 -23992060 - B3 SINE B2 0 216 2 5 1906 1261 41 0 0 chr1 173203518 173203664 -23991768 - B1_Mus2 SINE Alu 0 147 2 5 1906 437 316 50 25 chr1 173203723 173203882 -23991550 - ID_B1 SINE B4 -60 164 2 5 1906 268 263 34 6 chr1 173203882 173203961 -23991471 - PB1D10 SINE Alu -36 84 5 5 1906 757 171 43 0 chr1 173204877 173205017 -23990415 - B1_Mur4 SINE Alu -1 149 4 5 1906 305 279 12 12 chr1 173205424 173205504 -23989928 + ID4_ SINE ID 3 82 -1 5 1906 272 280 17 78 chr1 173208736 173208852 -23986580 - B3A SINE B2 -86 112 4 5 1906 22 56 0 0 chr1 173213616 173213652 -23981780 + AT_rich Low_complexity Low_complexity 1 36 0 5 1906 327 222 0 0 chr1 173214344 173214425 -23981007 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1906 201 74 0 0 chr1 173214540 173214567 -23980865 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 5 1906 258 32 0 0 chr1 173214561 173214592 -23980840 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1906 616 149 107 1 chr1 173220387 173220519 -23974913 + B1_Mus2 SINE Alu 1 147 0 5 1906 387 0 0 0 chr1 173220528 173220571 -23974861 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1906 180 0 0 0 chr1 173220603 173220623 -23974809 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1906 1169 57 7 0 chr1 173220624 173220765 -23974667 + B1_Mus1 SINE Alu 2 143 -5 6 1906 1352 55 16 57 chr1 173220792 173220984 -23974448 - B2_Mm2 SINE B2 -9 186 3 6 1906 401 196 136 10 chr1 173221373 173221476 -23973956 - ID_B1 SINE B4 -16 208 93 6 1906 2055 165 77 75 chr1 173221476 173221941 -23973491 - RMER4A LTR ERVK 0 466 1 6 1906 432 265 20 0 chr1 173222139 173222241 -23973191 - PB1D7 SINE Alu -15 105 2 6 1906 1887 121 39 65 chr1 173222351 173222687 -23972745 + ORR1A2 LTR MaLR 1 327 0 6 1906 484 236 9 9 chr1 173222796 173222907 -23972525 - B3 SINE B2 -68 148 38 6 1906 1245 112 43 0 chr1 173222966 173223153 -23972279 - B2_Mm2 SINE B2 0 195 1 6 1906 486 0 0 0 chr1 173223175 173223229 -23972203 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1906 395 284 48 34 chr1 173223229 173223375 -23972057 - RSINE1 SINE B4 -17 148 1 6 1906 2110 172 91 5 chr1 173223430 173223857 -23971575 - RMER4A LTR ERVK -2 464 1 6 1906 240 160 58 39 chr1 173224016 173224068 -23971364 - PB1D7 SINE Alu -2 118 66 6 1906 607 263 73 17 chr1 173224025 173224203 -23971229 - ID_B1 SINE B4 -9 215 28 6 1906 360 114 7 0 chr1 173225624 173225691 -23969741 - B1_Mus1 SINE Alu -20 100 31 6 1906 264 318 43 43 chr1 173225833 173225948 -23969484 + B1_Mus1 SINE Alu 7 121 -27 6 1906 871 112 14 34 chr1 173225931 173226079 -23969353 + B1_Mur4 SINE Alu 6 150 0 6 1906 216 97 0 0 chr1 173226144 173226175 -23969257 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 6 1906 786 231 40 10 chr1 173226252 173226453 -23968979 - B3 SINE B2 -8 208 2 6 1906 334 275 45 18 chr1 173226490 173226601 -23968831 + ID_B1 SINE B4 2 115 -109 6 1906 570 217 34 27 chr1 173226671 173226818 -23968614 - B1_Mur3 SINE Alu -1 148 1 6 1906 229 267 200 0 chr1 173226902 173226992 -23968440 - PB1D10 SINE Alu -7 110 3 6 1906 261 257 27 41 chr1 173226926 173226999 -23968433 - ID_B1 SINE B4 -73 151 80 6 1906 453 36 0 0 chr1 173227123 173227178 -23968254 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1906 968 127 91 0 chr1 173227356 173227521 -23967911 + B2_Mm2 SINE B2 2 181 -14 6 1906 1164 68 0 20 chr1 173227539 173227688 -23967744 - B1_Mus1 SINE Alu 0 148 3 6 1906 1005 62 181 30 chr1 173227702 173227868 -23967564 - B2_Mm2 SINE B2 -4 191 1 6 1906 532 85 217 0 chr1 173228096 173228202 -23967230 + RLTR33 LTR ERVK 1 129 -549 6 1906 717 255 98 36 chr1 173228303 173228711 -23966721 + RLTR12B LTR ERVK 42 501 -27 6 1906 2075 128 16 55 chr1 173228711 173229090 -23966342 + RLTR9A LTR ERVK 1 364 -4 6 1906 206 148 16 0 chr1 173229387 173229408 -23966024 + A-rich Low_complexity Low_complexity 4 24 0 6 1906 512 29 0 0 chr1 173229408 173229515 -23965917 + L1_Mus1 LINE L1 6499 6567 0 6 1906 1431 133 104 132 chr1 173229567 173229931 -23965501 + RLTR45-int LTR ERVK 2083 2436 -4808 6 1906 568 220 14 34 chr1 173229931 173230077 -23965355 + ID_B1 SINE B4 79 221 -3 6 1906 958 75 0 22 chr1 173229947 173230083 -23965349 + B1_Mus1 SINE Alu 16 148 0 6 1906 220 183 0 32 chr1 173230083 173230145 -23965287 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 6 1906 8969 135 16 69 chr1 173230145 173230642 -23964790 + RMER16-int LTR ERVK 1431 1921 -5485 6 1906 1004 131 67 11 chr1 173230642 173230820 -23964612 + B2_Mm1t SINE B2 1 188 -5 6 1906 1567 38 0 21 chr1 173230825 173231015 -23964417 + B2_Mm1a SINE B2 2 187 -6 6 1906 9052 135 16 69 chr1 173231015 173232076 -23963356 + RMER16-int LTR ERVK 1566 2917 -4489 6 1906 1165 55 0 27 chr1 173232076 173232225 -23963207 - B1_Mm SINE Alu 0 147 3 6 1906 9052 177 89 80 chr1 173232225 173232912 -23962520 + RMER16-int LTR ERVK 1866 2516 -2890 6 1906 1175 68 7 0 chr1 173232912 173233058 -23962374 + B1_Mus1 SINE Alu 2 148 0 6 1906 9052 177 89 80 chr1 173233058 173233425 -23962007 + RMER16-int LTR ERVK 2517 2862 -2544 6 1906 954 136 0 0 chr1 173233425 173233580 -23961852 + (TA)n Simple_repeat Simple_repeat 1 155 0 6 1906 9052 177 89 80 chr1 173233580 173233969 -23961463 + RMER16-int LTR ERVK 2863 3278 -2128 6 1906 3467 55 43 66 chr1 173233969 173234455 -23960977 - MT2C_Mm LTR ERVL 0 475 1 6 1906 9052 177 89 80 chr1 173234455 173235186 -23960246 + RMER16-int LTR ERVK 3279 4023 -1383 6 1906 1080 122 6 17 chr1 173235670 173235845 -23959587 + RMER16-int LTR ERVK 4004 4176 -1230 6 1906 795 57 0 0 chr1 173235880 173235985 -23959447 - B1_Mm SINE Alu 0 147 43 6 1906 316 230 0 63 chr1 173236001 173236080 -23959352 + ETnERV2-int LTR ERVK 6105 6178 -1228 6 1906 1675 169 106 143 chr1 173236082 173236516 -23958916 - RMER19B LTR ERVK -429 473 43 6 1906 1329 80 25 51 chr1 173236516 173236713 -23958719 + B2_Mm1t SINE B2 2 193 0 6 1906 1675 169 106 143 chr1 173236713 173236767 -23958665 - RMER19B LTR ERVK -860 42 3 6 1906 437 216 87 101 chr1 173237143 173237292 -23958140 - B1_Mur2 SINE Alu -2 147 1 6 1906 1055 45 29 29 chr1 173237329 173237467 -23957965 + B1_Mus1 SINE Alu 1 138 -10 6 1906 519 17 0 0 chr1 173237467 173237527 -23957905 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 6 1906 595 242 15 15 chr1 173237527 173237661 -23957771 - B1_Mus1 SINE Alu -14 134 1 6 1906 1202 118 6 27 chr1 173238448 173238631 -23956801 - B2_Mm2 SINE B2 -16 179 1 6 1906 1299 77 16 11 chr1 173238830 173239014 -23956418 + B2_Mm2 SINE B2 2 186 -9 6 1906 673 149 8 0 chr1 173239073 173239194 -23956238 - B1_Mus1 SINE Alu 0 148 27 6 1906 1029 100 124 27 chr1 173239649 173239834 -23955598 - MurERV4-int LTR ERVK -2958 2302 2100 6 1906 872 280 47 59 chr1 173239862 173240268 -23955164 - BGLII_B LTR ERVK -29 412 12 6 1906 780 234 139 84 chr1 173240334 173240764 -23954668 + RLTR12B LTR ERVK 48 501 -27 6 1906 1673 11 11 0 chr1 173240790 173240975 -23954457 - B2_Mm1a SINE B2 -6 187 1 6 1906 1184 55 7 0 chr1 173241579 173241725 -23953707 + B1_Mus2 SINE Alu 1 147 0 6 1906 261 0 0 0 chr1 173241726 173241755 -23953677 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 6 1906 1070 75 7 0 chr1 173241873 173242019 -23953413 + B1_Mus2 SINE Alu 1 147 0 6 1906 1293 88 115 0 chr1 173242149 173242375 -23953057 + RLTR9A LTR ERVK 1 252 -116 6 1906 459 273 70 0 chr1 173242387 173242530 -23952902 + MurERV4-int LTR ERVK 4881 5033 -227 6 1906 7328 112 62 61 chr1 173242541 173244045 -23951387 + RLTR1B-int LTR ERV1 1471 4146 -917 6 1906 943 231 17 13 chr1 173244130 173244363 -23951069 + RLTR1B-int LTR ERV1 4788 5021 -42 6 1906 4247 59 40 9 chr1 173244366 173244909 -23950523 + LTRIS2 LTR ERV1 5 564 0 6 1906 428 199 164 34 chr1 173244909 173245055 -23950377 + MYSERV-int LTR ERVK 4293 4457 -2093 6 1906 631 58 0 0 chr1 173245057 173245144 -23950288 + RMER19A LTR ERVK 1 87 -650 6 1906 3845 28 102 19 chr1 173245145 173245686 -23949746 + RLTR6_Mm LTR ERV1 1 586 -68 6 1906 2875 131 109 51 chr1 173245674 173245897 -23949535 + RMER19A LTR ERVK 135 361 -376 6 1906 1360 109 5 0 chr1 173245897 173246089 -23949343 + B2_Mm1a SINE B2 1 193 0 6 1906 2875 131 109 51 chr1 173246089 173246435 -23948997 + RMER19A LTR ERVK 362 737 0 6 1906 706 202 88 12 chr1 173246435 173246605 -23948827 + MYSERV-int LTR ERVK 4454 4636 -1914 6 1906 255 146 0 0 chr1 173246615 173246643 -23948789 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1906 1217 48 0 0 chr1 173246643 173246789 -23948643 + B1_Mus2 SINE Alu 2 147 0 6 1906 255 146 0 0 chr1 173246789 173246808 -23948624 + (A)n Simple_repeat Simple_repeat 1 19 0 6 1906 457 230 24 96 chr1 173246916 173247041 -23948391 - MYSERV-int LTR ERVK -593 4667 4552 6 1906 669 25 0 0 chr1 173247305 173247384 -23948048 + (TTTCC)n Simple_repeat Simple_repeat 3 81 0 6 1906 1527 50 6 0 chr1 173247384 173247564 -23947868 - B2_Mm1t SINE B2 -11 182 2 6 1906 1286 14 0 0 chr1 173247777 173247923 -23947509 + B1_Mm SINE Alu 2 147 0 6 1906 1303 79 22 27 chr1 173247939 173248122 -23947310 - B2_Mm2 SINE B2 -12 183 2 6 1906 529 95 12 0 chr1 173248174 173248258 -23947174 - B2_Mm1t SINE B2 -20 173 89 6 1906 1243 34 7 0 chr1 173248258 173248405 -23947027 + B1_Mus1 SINE Alu 1 148 0 6 1906 309 100 0 0 chr1 173248405 173248455 -23946977 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 6 1906 350 253 163 86 chr1 173248566 173248916 -23946516 + RLTR11A2 LTR ERVK 1 377 -150 6 1906 1596 143 85 0 chr1 173248956 173249250 -23946182 + ORR1A2 LTR MaLR 1 319 -8 6 1906 307 208 0 14 chr1 173249254 173249327 -23946105 + RLTR11A2 LTR ERVK 360 431 -22 6 1906 308 329 23 36 chr1 173249367 173249588 -23945844 - RLTR15 LTR ERVK -36 323 106 6 1906 2004 168 110 39 chr1 173249634 173249959 -23945473 + RLTR12B LTR ERVK 1 360 -168 6 1906 3085 160 127 16 chr1 173249959 173250582 -23944850 + RLTR17 LTR ERVK 1 692 0 6 1906 2004 168 110 39 chr1 173250582 173250738 -23944694 + RLTR12B LTR ERVK 361 516 -12 6 1906 486 85 12 0 chr1 173250872 173250954 -23944478 + L1Md_F2 LINE L1 6499 6581 -1 6 1906 1066 231 62 24 chr1 173250977 173251266 -23944166 - MYSERV-int LTR ERVK -2056 4494 4195 6 1906 1491 187 24 48 chr1 173251319 173251651 -23943781 - MYSERV-int LTR ERVK -2452 4098 3775 6 1906 232 286 189 44 chr1 173252591 173252818 -23942614 - RLTR15 LTR ERVK -37 322 63 6 1906 388 164 0 0 chr1 173253774 173253841 -23941591 + B1_Mur1 SINE Alu 73 139 -10 6 1906 265 250 0 40 chr1 173253775 173253850 -23941582 + ID_B1 SINE B4 152 223 -1 6 1906 319 228 86 38 chr1 173254162 173254267 -23941165 - ID_B1 SINE B4 -5 219 110 6 1906 515 187 63 24 chr1 173254354 173254480 -23940952 + B1_Mur2 SINE Alu 11 141 -8 6 1906 965 169 93 42 chr1 173254582 173254798 -23940634 + RLTR12B LTR ERVK 2 228 -300 6 1906 1246 34 0 20 chr1 173254812 173254962 -23940470 - B1_Mus2 SINE Alu 0 147 1 6 1906 507 271 58 89 chr1 173254994 173255342 -23940090 - RLTR15 LTR ERVK -22 337 1 6 1906 1042 190 42 17 chr1 173255376 173255617 -23939815 + RLTR12B LTR ERVK 279 525 -3 6 1906 455 271 161 8 chr1 173255660 173255790 -23939642 - RSINE1 SINE B4 -4 161 12 6 1906 336 125 236 0 chr1 173255832 173255904 -23939528 - PB1D9 SINE Alu -10 110 22 6 1906 396 248 53 76 chr1 173255933 173256064 -23939368 + B3 SINE B2 88 215 -1 6 1906 429 241 98 0 chr1 173256267 173256379 -23939053 + B1_Mur2 SINE Alu 2 124 -25 6 1906 262 292 80 58 chr1 173256268 173256406 -23939026 + ID_B1 SINE B4 84 224 0 6 1906 511 259 143 31 chr1 173256550 173256804 -23938628 - L1MA4 LINE L1 -393 5907 5619 7 1906 1189 68 0 0 chr1 173256968 173257114 -23938318 - B1_Mus2 SINE Alu 0 147 2 7 1906 251 224 0 56 chr1 173257129 173257140 -23938292 + B4A SINE B4 85 95 -197 7 1906 642 13 0 0 chr1 173257140 173257215 -23938217 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1906 339 100 0 0 chr1 173257215 173257265 -23938167 + PB1D9 SINE Alu 12 61 -59 7 1906 190 118 39 19 chr1 173257285 173257337 -23938095 + A-rich Low_complexity Low_complexity 2 54 0 7 1906 775 113 73 0 chr1 173257640 173257764 -23937668 - B1_Mus2 SINE Alu -6 141 9 7 1906 225 277 113 47 chr1 173257886 173257992 -23937440 - B1F1 SINE Alu -21 128 16 7 1906 282 212 61 0 chr1 173258633 173258699 -23936733 - PB1 SINE Alu -32 95 26 7 1906 282 29 0 0 chr1 173259535 173259570 -23935862 + (CGG)n Simple_repeat Simple_repeat 3 37 0 7 1906 256 245 42 11 chr1 173259633 173259728 -23935704 + (CGGGG)n Simple_repeat Simple_repeat 5 102 0 7 1906 252 330 5 48 chr1 173259950 173260138 -23935294 + G-rich Low_complexity Low_complexity 1 180 0 7 1906 188 34 0 33 chr1 173260820 173260850 -23934582 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 7 1906 207 0 0 0 chr1 173261337 173261360 -23934072 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 7 1906 1163 50 0 0 chr1 173261822 173261961 -23933471 - B1_Mus1 SINE Alu -9 139 1 7 1906 733 207 29 0 chr1 173262118 173262258 -23933174 - B1_Mur1 SINE Alu -5 144 1 7 1906 285 247 38 25 chr1 173262687 173262766 -23932666 + ID2 SINE ID 4 83 0 7 1906 461 197 7 13 chr1 173262839 173262957 -23932475 - B1_Mus1 SINE Alu -1 119 1 7 1906 523 274 72 29 chr1 173263740 173263947 -23931485 - MER20 DNA MER1_type -3 216 1 7 1906 257 298 73 55 chr1 173264899 173265009 -23930423 - PB1D9 SINE Alu -8 112 1 7 1906 286 290 56 9 chr1 173265304 173265412 -23930020 - PB1D9 SINE Alu -7 113 1 7 1906 555 176 219 0 chr1 173265459 173265578 -23929854 - B1_Mur4 SINE Alu 0 150 6 7 1906 240 186 0 0 chr1 173265938 173265997 -23929435 + CT-rich Low_complexity Low_complexity 2 60 0 7 1906 934 118 28 7 chr1 173265999 173266144 -23929288 - B1_Mus1 SINE Alu 0 148 1 7 1906 868 134 7 32 chr1 173266337 173266491 -23928941 + B1_Mur4 SINE Alu 1 150 0 7 1906 195 42 0 0 chr1 173266497 173266521 -23928911 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 7 1906 773 178 59 0 chr1 173266535 173266670 -23928762 + B1_Mur2 SINE Alu 1 143 -6 7 1906 1142 90 0 0 chr1 173266672 173266817 -23928615 + B1_Mus1 SINE Alu 1 145 -3 7 1906 290 24 48 0 chr1 173266817 173266859 -23928573 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1906 27 0 0 0 chr1 173266920 173266947 -23928485 + AT_rich Low_complexity Low_complexity 1 27 0 7 1906 475 117 0 13 chr1 173266962 173267040 -23928392 - B2_Mm2 SINE B2 -71 124 48 7 1906 458 221 73 10 chr1 173267074 173267170 -23928262 - PB1D9 SINE Alu -9 111 10 7 1906 494 218 62 22 chr1 173267181 173267351 -23928081 - B3 SINE B2 -14 181 1 7 1906 413 293 121 8 chr1 173267351 173267475 -23927957 - B1_Mur1 SINE Alu -9 140 3 7 1906 299 263 60 11 chr1 173267506 173267612 -23927820 - PB1D10 SINE Alu -2 118 2 7 1906 272 287 57 38 chr1 173267612 173267648 -23927784 - ID SINE ID -139 85 48 7 1906 527 238 24 8 chr1 173267703 173267826 -23927606 - ID_B1 SINE B4 -9 215 91 7 1906 562 269 27 7 chr1 173267836 173267982 -23927450 - B1F2 SINE Alu 0 149 1 7 1906 531 198 72 0 chr1 173268139 173268250 -23927182 - PB1D9 SINE Alu 0 120 2 7 1906 1058 252 28 14 chr1 173269208 173269494 -23925938 + B4A SINE B4 1 290 -2 7 1906 354 186 26 53 chr1 173269667 173269800 -23925632 - B3A SINE B2 -9 207 1 7 1906 849 113 7 66 chr1 173269904 173270055 -23925377 - B1_Mur4 SINE Alu 0 150 9 7 1906 23 0 0 0 chr1 173271440 173271463 -23923969 + AT_rich Low_complexity Low_complexity 1 23 0 7 1906 666 167 18 0 chr1 173273131 173273245 -23922187 - PB1D9 SINE Alu 0 120 5 7 1906 1131 75 14 0 chr1 173273270 173273416 -23922016 - B1_Mus1 SINE Alu 0 148 1 7 1906 459 0 0 0 chr1 173273960 173274011 -23921421 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1906 481 211 102 29 chr1 173274767 173274904 -23920528 - ID_B1 SINE B4 0 224 78 7 1906 180 0 0 0 chr1 173276398 173276418 -23919014 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1906 471 171 68 0 chr1 173276461 173276549 -23918883 - B1_Mus1 SINE Alu -33 115 22 7 1906 258 250 65 97 chr1 173276472 173276565 -23918867 - MT2B LTR ERVL -343 258 169 7 1906 253 173 0 19 chr1 173276555 173276608 -23918824 - PB1 SINE Alu 0 127 76 7 1906 858 126 0 0 chr1 173276671 173276806 -23918626 + (TC)n Simple_repeat Simple_repeat 1 135 0 7 1906 1029 60 60 0 chr1 173276806 173276957 -23918475 - B2_Mm1a SINE B2 -33 160 1 7 1907 332 206 232 20 chr1 173277245 173277344 -23918088 + PB1D7 SINE Alu 1 120 0 7 1907 543 251 118 17 chr1 173277355 173277533 -23917899 - B3 SINE B2 -19 197 2 7 1907 180 0 0 0 chr1 173277814 173277834 -23917598 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1907 594 202 64 8 chr1 173278152 173278277 -23917155 - B4 SINE B4 -55 237 106 7 1907 189 0 0 0 chr1 173278333 173278354 -23917078 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 7 1907 507 107 0 0 chr1 173278362 173278437 -23916995 + (TCC)n Simple_repeat Simple_repeat 3 77 0 7 1907 913 327 105 96 chr1 173278707 173279692 -23915740 - MLT-int LTR MaLR -197 1383 490 7 1907 811 163 0 0 chr1 173279705 173279828 -23915604 - B3 SINE B2 -86 130 8 7 1907 1180 81 0 0 chr1 173279937 173280085 -23915347 - B1_Mus1 SINE Alu 0 148 1 7 1907 502 202 0 31 chr1 173280085 173280175 -23915257 - PB1D9 SINE Alu -6 114 27 7 1907 1070 94 0 7 chr1 173280284 173280424 -23915008 - B1_Mus2 SINE Alu -8 139 1 7 1907 492 32 0 0 chr1 173280510 173280572 -23914860 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1907 267 237 102 0 chr1 173280590 173280649 -23914783 - ID_B1 SINE B4 -22 202 138 7 1907 267 229 0 67 chr1 173280592 173280667 -23914765 - PB1D10 SINE Alu -27 90 21 7 1907 512 314 25 12 chr1 173280858 173281019 -23914413 - RSINE1 SINE B4 0 165 3 7 1907 239 250 62 15 chr1 173281331 173281396 -23914036 + MER20 DNA MER1_type 4 71 -148 7 1907 576 239 38 60 chr1 173281578 173281746 -23913686 - B3 SINE B2 -5 211 37 7 1907 414 270 8 59 chr1 173282118 173282236 -23913196 + RSINE1 SINE B4 11 122 -43 7 1907 685 143 0 48 chr1 173282275 173282400 -23913032 - B1_Mur4 SINE Alu 0 150 32 7 1907 25 0 0 0 chr1 173282453 173282478 -23912954 + AT_rich Low_complexity Low_complexity 1 25 0 7 1907 565 243 62 14 chr1 173282485 173282631 -23912801 - B3 SINE B2 0 216 64 7 1907 311 227 23 0 chr1 173282637 173282725 -23912707 - RMER4A LTR ERVK -122 344 255 7 1907 318 266 86 31 chr1 173282760 173282888 -23912544 - RMER17C-int LTR ERVK -56 3182 3048 7 1907 286 278 21 48 chr1 173282930 173283122 -23912310 - MYSERV-int LTR ERVK -1673 4877 4708 7 1907 217 220 80 0 chr1 173283182 173283213 -23912219 + B1F2 SINE Alu 34 68 -81 7 1907 1594 190 34 50 chr1 173283213 173283629 -23911803 - RMER16 LTR ERVK 0 533 1 7 1907 614 233 184 82 chr1 173283773 173283817 -23911615 + B3 SINE B2 1 45 -171 7 1907 1172 49 0 27 chr1 173283817 173283965 -23911467 + B1_Mus1 SINE Alu 5 148 0 7 1907 614 233 184 82 chr1 173283965 173284116 -23911316 + B3 SINE B2 46 216 0 7 1907 221 0 0 33 chr1 173284265 173284295 -23911137 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 7 1907 2432 197 26 24 chr1 173284391 173284896 -23910536 + RLTR11A2 LTR ERVK 1 506 -21 7 1907 2110 135 12 9 chr1 173284942 173285285 -23910147 - RLTR15 LTR ERVK -13 346 3 7 1907 276 214 69 28 chr1 173285300 173285372 -23910060 - ID4_ SINE ID -7 76 2 7 1907 252 302 78 92 chr1 173285396 173285549 -23909883 + RSINE1 SINE B4 15 165 0 7 1907 345 290 46 9 chr1 173285450 173285558 -23909874 + B3A SINE B2 83 194 -4 7 1907 1382 82 16 16 chr1 173285563 173285750 -23909682 + B2_Mm2 SINE B2 1 187 -8 7 1907 1289 100 16 22 chr1 173285821 173286005 -23909427 + B2_Mm2 SINE B2 5 187 -8 7 1907 294 234 21 0 chr1 173286005 173286068 -23909364 + B3 SINE B2 31 96 -102 7 1907 653 239 35 111 chr1 173286101 173286191 -23909241 + B3 SINE B2 5 84 -132 7 1907 522 0 0 0 chr1 173286191 173286249 -23909183 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1907 653 239 35 111 chr1 173286249 173286384 -23909048 + B3 SINE B2 85 213 -3 7 1907 209 346 37 73 chr1 173287186 173287241 -23908191 + MER5A DNA MER1_type 1 51 -138 7 1907 361 247 0 24 chr1 173287241 173287324 -23908108 - ID4 SINE ID 0 83 3 7 1907 209 346 37 73 chr1 173287324 173287377 -23908055 + MER5A DNA MER1_type 52 105 -84 7 1907 217 246 15 15 chr1 173288210 173288276 -23907156 + (TTG)n Simple_repeat Simple_repeat 1 66 0 7 1907 668 191 12 87 chr1 173288349 173288510 -23906922 + B1_Mur1 SINE Alu 1 149 0 7 1907 778 180 26 87 chr1 173288633 173288828 -23906604 + B2_Mm2 SINE B2 2 184 -11 7 1907 680 177 52 78 chr1 173289241 173289394 -23906038 - B1_Mur1 SINE Alu 0 149 1 7 1907 836 137 48 0 chr1 173292205 173292329 -23903103 + B3 SINE B2 1 130 -86 7 1907 408 230 14 94 chr1 173292398 173292540 -23902892 + B4 SINE B4 40 165 -59 7 1907 1197 62 7 0 chr1 173292627 173292773 -23902659 + B1_Mus1 SINE Alu 2 148 0 8 1907 326 85 0 17 chr1 173292773 173292833 -23902599 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 8 1907 313 113 333 27 chr1 173292850 173292958 -23902474 + B2_Mm2 SINE B2 47 187 -8 8 1907 484 244 25 16 chr1 173293554 173293675 -23901757 + RMER12 LTR ERVK 1130 1251 -71 8 1907 1432 49 43 0 chr1 173293675 173293860 -23901572 + B2_Mm2 SINE B2 2 194 -1 8 1907 1207 48 7 14 chr1 173293863 173294011 -23901421 + B1_Mus1 SINE Alu 1 147 -1 8 1907 324 304 57 29 chr1 173294014 173294119 -23901313 + RSINE1 SINE B4 53 160 -5 8 1907 212 125 0 59 chr1 173294171 173294195 -23901237 + T-rich Low_complexity Low_complexity 31 53 0 8 1907 1488 59 16 5 chr1 173294195 173294383 -23901049 - B2_Mm2 SINE B2 -4 191 2 8 1907 212 125 0 59 chr1 173294383 173294409 -23901023 + T-rich Low_complexity Low_complexity 6 30 0 8 1907 761 148 104 0 chr1 173294409 173294544 -23900888 - B1_Mur3 SINE Alu 0 149 1 8 1907 471 294 99 33 chr1 173294578 173294729 -23900703 + RSINE1 SINE B4 2 162 -3 8 1907 419 259 127 17 chr1 173294846 173294964 -23900468 - B1F2 SINE Alu -17 132 2 8 1907 233 241 53 147 chr1 173294964 173294991 -23900441 - RLTR25B LTR ERVK -491 537 515 8 1907 252 0 0 0 chr1 173294991 173295019 -23900413 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8 1907 233 241 53 147 chr1 173295019 173295101 -23900331 - RLTR25B LTR ERVK -514 514 444 8 1907 677 200 0 0 chr1 173295021 173295131 -23900301 - B1_Mur3 SINE Alu -27 122 13 8 1907 238 296 19 93 chr1 173295557 173295665 -23899767 + LTR81A LTR ERV1? 397 496 -854 8 1907 241 320 8 39 chr1 173296960 173297090 -23898342 + (CACCC)n Simple_repeat Simple_repeat 2 127 0 8 1907 344 289 48 24 chr1 173297313 173297437 -23897995 + L2c LINE L2 3258 3384 -3 8 1907 252 330 191 5 chr1 173298800 173298989 -23896443 - L2c LINE L2 -73 3314 3091 8 1907 220 206 103 64 chr1 173298992 173299070 -23896362 + ID4_ SINE ID 1 81 -2 8 1907 225 287 146 49 chr1 173299162 173299232 -23896200 + YREP_Mm Unknown Unknown 69 143 -1669 8 1907 1017 103 7 33 chr1 173299232 173299382 -23896050 + B1_Mur4 SINE Alu 5 150 0 8 1907 225 287 146 49 chr1 173299382 173299516 -23895916 + YREP_Mm Unknown Unknown 144 292 -1520 8 1907 546 296 14 27 chr1 173299398 173299544 -23895888 - ID_B1 SINE B4 0 224 81 8 1907 560 133 8 0 chr1 173300940 173301060 -23894372 + (CA)n Simple_repeat Simple_repeat 2 122 0 8 1907 462 196 0 0 chr1 173301244 173301346 -23894086 + (CATA)n Simple_repeat Simple_repeat 3 104 0 8 1907 268 296 51 0 chr1 173302283 173302381 -23893051 - MIR3 SINE MIR -24 184 82 8 1907 313 325 150 13 chr1 173302810 173302963 -23892469 + MIR3 SINE MIR 34 207 -1 8 1907 207 0 0 0 chr1 173304731 173304754 -23890678 + (C)n Simple_repeat Simple_repeat 1 23 0 8 1907 581 40 13 0 chr1 173305526 173305602 -23889830 + (TATG)n Simple_repeat Simple_repeat 2 78 0 8 1907 198 0 0 0 chr1 173306221 173306243 -23889189 + (GGA)n Simple_repeat Simple_repeat 2 23 0 8 1907 941 187 107 15 chr1 173306666 173306862 -23888570 + B3 SINE B2 3 216 0 8 1907 207 0 0 0 chr1 173307480 173307503 -23887929 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1907 1253 54 0 0 chr1 173307503 173307650 -23887782 - B1_Mm SINE Alu 0 147 1 8 1907 379 281 17 34 chr1 173307721 173307753 -23887679 - PB1D10 SINE Alu 0 117 2 8 1907 299 326 21 10 chr1 173307753 173307839 -23887593 - ID_B1 SINE B4 -55 169 83 8 1907 756 52 0 0 chr1 173307839 173307936 -23887496 + (TCCA)n Simple_repeat Simple_repeat 4 100 0 8 1907 385 297 67 85 chr1 173308041 173308369 -23887063 - L2c LINE L2 -62 3325 3004 8 1907 489 245 9 28 chr1 173309081 173309190 -23886242 + PB1D10 SINE Alu 11 117 0 8 1907 560 27 0 27 chr1 173309252 173309327 -23886105 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8 1907 210 209 47 0 chr1 173309878 173309921 -23885511 + L2c LINE L2 3268 3312 -75 8 1907 659 206 71 0 chr1 173309996 173310137 -23885295 + MIRc SINE MIR 80 230 -38 8 1907 274 348 51 43 chr1 173310808 173311042 -23884390 - L3 LINE CR1 -203 4286 4051 8 1907 444 181 11 46 chr1 173311075 173311162 -23884270 - B1_Mus2 SINE Alu -1 146 63 8 1907 731 130 8 0 chr1 173311507 173311630 -23883802 + (GGA)n Simple_repeat Simple_repeat 3 126 0 8 1907 276 311 40 0 chr1 173311640 173311714 -23883718 + PB1D7 SINE Alu 1 77 -43 8 1907 700 289 43 5 chr1 173311717 173311941 -23883491 + MIRb SINE MIR 25 262 0 8 1907 483 144 11 46 chr1 173311996 173312083 -23883349 + B1_Mus2 SINE Alu 63 146 -1 8 1907 1157 94 19 0 chr1 173312215 173312375 -23883057 + B2_Mm2 SINE B2 1 163 -32 8 1907 180 0 0 0 chr1 173312375 173312395 -23883037 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1907 912 212 49 0 chr1 173312395 173312418 -23883014 + B2_Mm1t SINE B2 170 192 -1 8 1907 747 120 164 23 chr1 173312983 173313111 -23882321 - B1_Mur4 SINE Alu 0 150 5 8 1907 321 321 170 7 chr1 173313219 173313354 -23882078 + MIRb SINE MIR 34 190 -78 8 1907 477 0 0 0 chr1 173317148 173317201 -23878231 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1907 201 346 125 0 chr1 173318624 173318728 -23876704 - MIRc SINE MIR -37 231 115 8 1907 239 277 35 35 chr1 173318717 173318803 -23876629 - MIR3 SINE MIR -34 174 89 8 1907 689 241 22 0 chr1 173320731 173320868 -23874564 - RSINE1 SINE B4 -20 145 6 8 1907 593 254 35 7 chr1 173320886 173321029 -23874403 - RSINE1 SINE B4 0 165 19 8 1907 224 59 0 29 chr1 173321073 173321108 -23874324 + (TA)n Simple_repeat Simple_repeat 2 35 0 8 1907 794 236 12 12 chr1 173321108 173321275 -23874157 - B3 SINE B2 -22 194 28 8 1907 1119 78 0 7 chr1 173321402 173321544 -23873888 - B1_Mus1 SINE Alu -6 142 2 8 1907 274 286 11 45 chr1 173322705 173322793 -23872639 - MER96 DNA hAT 0 175 91 8 1907 198 273 54 18 chr1 173323225 173323281 -23872151 - L4 LINE RTE -297 1732 1675 8 1907 639 253 12 48 chr1 173323493 173323527 -23871905 + B3A SINE B2 2 34 -164 8 1907 1387 68 5 35 chr1 173323527 173323724 -23871708 + B2_Mm2 SINE B2 5 195 0 8 1907 639 217 51 103 chr1 173323724 173323884 -23871548 + B3A SINE B2 35 186 -9 8 1907 483 293 103 30 chr1 173323995 173324266 -23871166 - B4A SINE B4 0 292 2 8 1907 332 286 116 0 chr1 173324276 173324388 -23871044 - PB1 SINE Alu -2 125 1 8 1907 217 310 113 0 chr1 173324743 173324814 -23870618 + PB1D10 SINE Alu 6 84 -33 8 1907 180 0 0 0 chr1 173325070 173325090 -23870342 + (TGG)n Simple_repeat Simple_repeat 2 21 0 8 1907 705 146 7 58 chr1 173325090 173325228 -23870204 + B1_Mus2 SINE Alu 16 146 -1 8 1907 441 287 34 87 chr1 173325557 173325706 -23869726 - RSINE1 SINE B4 0 165 25 8 1907 418 224 0 0 chr1 173325954 173326030 -23869402 + B3A SINE B2 1 76 -122 8 1907 226 360 82 38 chr1 173326162 173326216 -23869216 - B4A SINE B4 -54 238 107 8 1907 254 296 86 54 chr1 173326216 173326309 -23869123 - B1F SINE Alu -53 96 1 8 1907 226 360 82 38 chr1 173326309 173326321 -23869111 - B4A SINE B4 -54 106 73 8 1907 209 114 0 28 chr1 173326420 173326456 -23868976 + (ATG)n Simple_repeat Simple_repeat 1 35 0 8 1907 1149 76 0 7 chr1 173326456 173326601 -23868831 - B1_Mus2 SINE Alu -1 146 3 8 1907 590 296 48 74 chr1 173326808 173327038 -23868394 + ID_B1 SINE B4 1 224 0 8 1907 602 91 106 62 chr1 173327041 173327169 -23868263 + B1_Mur4 SINE Alu 1 148 -2 8 1907 1186 62 0 7 chr1 173327171 173327318 -23868114 + B1_Mus2 SINE Alu 2 147 0 8 1907 1641 287 86 26 chr1 173327975 173328695 -23866737 - L1MB7 LINE L1 -27 6157 5395 8 1907 243 0 0 0 chr1 173328754 173328781 -23866651 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 8 1907 248 154 19 0 chr1 173328885 173328937 -23866495 + CT-rich Low_complexity Low_complexity 2 54 0 8 1907 972 297 10 63 chr1 173329056 173329117 -23866315 - B4A SINE B4 -6 286 226 8 1907 1059 153 38 0 chr1 173329117 173329146 -23866286 - B2_Mm2 SINE B2 -5 190 161 8 1907 402 21 0 0 chr1 173329146 173329193 -23866239 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 8 1907 1059 153 38 0 chr1 173329193 173329346 -23866086 - B2_Mm2 SINE B2 -35 160 2 8 1907 972 297 10 63 chr1 173329346 173329360 -23866072 - B4A SINE B4 -67 225 218 8 1907 1240 165 60 0 chr1 173329360 173329560 -23865872 - B3 SINE B2 -4 212 1 8 1907 213 39 0 0 chr1 173329567 173329593 -23865839 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1907 972 297 10 63 chr1 173329593 173329810 -23865622 - B4A SINE B4 -75 217 1 8 1907 355 279 25 0 chr1 173329845 173329924 -23865508 - B1F SINE Alu -23 126 46 8 1907 331 255 42 68 chr1 173329937 173330055 -23865377 - L1MB7 LINE L1 -1002 5144 5030 8 1907 681 243 0 7 chr1 173330059 173330196 -23865236 + B1_Mur1 SINE Alu 1 136 -13 8 1907 741 53 0 0 chr1 173330198 173330292 -23865140 + (GGAA)n Simple_repeat Simple_repeat 4 97 0 8 1907 397 147 36 9 chr1 173330449 173330559 -23864873 + (TA)n Simple_repeat Simple_repeat 2 114 0 8 1907 427 261 11 0 chr1 173331397 173331485 -23863947 + PB1 SINE Alu 27 115 -12 8 1907 276 309 12 0 chr1 173331742 173331823 -23863609 - ID4 SINE ID 0 83 2 8 1907 288 263 0 0 chr1 173331834 173331891 -23863541 - B1F2 SINE Alu -92 57 1 8 1907 184 297 45 30 chr1 173332786 173332852 -23862580 - L2b LINE L2 -189 3186 3120 8 1907 1299 62 89 0 chr1 173332890 173333069 -23862363 + B2_Mm2 SINE B2 1 195 0 8 1907 459 0 0 0 chr1 173333239 173333290 -23862142 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1907 1662 37 0 0 chr1 173335611 173335802 -23859630 + B2_Mm1a SINE B2 2 192 -1 8 1907 368 218 47 47 chr1 173335814 173335920 -23859512 + PB1D10 SINE Alu 1 106 -11 8 1907 270 323 22 65 chr1 173335920 173335952 -23859480 + ID_B1 SINE B4 82 213 -11 8 1907 197 297 119 59 chr1 173335979 173336097 -23859335 - MIRb SINE MIR -104 164 40 9 1907 248 313 90 10 chr1 173336128 173336228 -23859204 + MIRc SINE MIR 2 109 -159 9 1907 1215 111 26 11 chr1 173336238 173336429 -23859003 - B2_Mm2 SINE B2 0 195 2 9 1907 682 284 33 19 chr1 173336460 173336675 -23858757 + ID_B1 SINE B4 1 218 -6 9 1907 1144 260 16 66 chr1 173336747 173337052 -23858380 - B4 SINE B4 -2 290 1 9 1907 624 262 14 0 chr1 173337123 173337268 -23858164 + B1_Mur1 SINE Alu 2 148 -1 9 1907 1162 147 21 5 chr1 173340046 173340237 -23855195 + B2_Mm2 SINE B2 2 195 0 9 1907 214 306 113 46 chr1 173340582 173340733 -23854699 - MIRb SINE MIR -34 234 74 9 1907 432 194 85 85 chr1 173340736 173340854 -23854578 + PB1D9 SINE Alu 3 120 0 9 1907 886 162 13 26 chr1 173343080 173343232 -23852200 - B1_Mur4 SINE Alu 0 150 1 9 1907 967 121 7 13 chr1 173343493 173343644 -23851788 + B1_Mur4 SINE Alu 1 150 0 9 1907 639 156 81 7 chr1 173343789 173343925 -23851507 - B1_Mus2 SINE Alu 0 147 2 9 1907 376 222 252 17 chr1 173344187 173344306 -23851126 - B1F SINE Alu 0 149 3 9 1907 286 267 34 34 chr1 173344707 173344796 -23850636 + MIR3 SINE MIR 4 92 -116 9 1907 661 194 23 15 chr1 173344863 173344994 -23850438 + B1_Mur3 SINE Alu 5 136 -13 9 1907 1252 118 27 0 chr1 173345033 173345220 -23850212 - B2_Mm1a SINE B2 0 193 2 9 1907 781 177 12 109 chr1 173345337 173345502 -23849930 - B1_Mur4 SINE Alu 0 150 2 9 1907 847 253 60 5 chr1 173346549 173346748 -23848684 + B3 SINE B2 1 210 -6 9 1907 226 243 160 13 chr1 173346772 173346847 -23848585 - Charlie12 DNA MER1_type -2756 117 32 9 1907 237 108 0 0 chr1 173348828 173348865 -23846567 + (T)n Simple_repeat Simple_repeat 1 37 0 9 1907 759 289 24 64 chr1 173350791 173351042 -23844390 + RLTR26 LTR ERVK 176 416 -226 9 1907 1045 80 72 0 chr1 173351149 173351287 -23844145 - B1_Mus1 SINE Alu 0 148 1 9 1907 294 279 20 16 chr1 173351344 173351471 -23843961 + B1F SINE Alu 42 138 -10 9 1907 605 185 59 0 chr1 173351461 173351580 -23843852 + B1_Mur2 SINE Alu 3 128 -21 9 1907 389 269 80 22 chr1 173351580 173351591 -23843841 + ID_B1 SINE B4 126 224 0 9 1907 245 307 37 64 chr1 173351627 173351730 -23843702 + B2_Mm2 SINE B2 5 106 -89 9 1907 4754 93 87 0 chr1 173351730 173352407 -23843025 + RMER19A LTR ERVK 1 736 -1 9 1907 614 274 43 50 chr1 173352407 173352464 -23842968 + RSINE1 SINE B4 104 165 0 9 1907 245 307 37 64 chr1 173352464 173352491 -23842941 + B2_Mm2 SINE B2 107 186 -9 9 1907 759 252 27 62 chr1 173352502 173352726 -23842706 + B3 SINE B2 1 216 0 9 1907 189 74 0 0 chr1 173352817 173352844 -23842588 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1907 387 267 104 133 chr1 173353282 173353455 -23841977 - ID_B1 SINE B4 -2 222 55 9 1907 601 262 41 0 chr1 173353476 173353598 -23841834 + RSINE1 SINE B4 8 134 -31 9 1907 289 238 248 14 chr1 173353598 173353621 -23841811 + B2_Mm2 SINE B2 7 185 -10 9 1907 862 230 102 0 chr1 173353631 173353827 -23841605 + B3 SINE B2 1 216 0 9 1907 582 286 20 87 chr1 173353852 173354077 -23841355 - ID_B1 SINE B4 -72 220 3 9 1907 1085 62 7 20 chr1 173354233 173354382 -23841050 + B1_Mus2 SINE Alu 1 147 0 9 1907 189 0 0 0 chr1 173354506 173354527 -23840905 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 1907 1007 76 0 0 chr1 173354527 173354659 -23840773 - B1_Mus1 SINE Alu -2 146 15 9 1907 612 225 6 62 chr1 173354659 173354688 -23840744 - ID_B1 SINE B4 -2 222 71 9 1907 234 128 0 0 chr1 173355136 173355175 -23840257 + (TTG)n Simple_repeat Simple_repeat 2 40 0 9 1907 222 344 54 0 chr1 173355460 173355553 -23839879 + L2c LINE L2 2975 3072 -315 9 1907 1270 34 0 0 chr1 173355903 173356051 -23839381 - B1_Mus1 SINE Alu 0 148 1 9 1907 524 242 39 29 chr1 173356237 173356339 -23839093 + B1F SINE Alu 3 105 -12 9 1907 350 273 0 0 chr1 173356473 173356550 -23838882 + PB1D10 SINE Alu 31 107 -10 9 1907 560 132 151 0 chr1 173356544 173356650 -23838782 + B1_Mus2 SINE Alu 24 145 -2 9 1907 325 252 48 19 chr1 173356657 173356762 -23838670 + RLTR25B LTR ERVK 392 499 -529 9 1907 687 160 0 40 chr1 173356690 173356814 -23838618 + B1_Mus2 SINE Alu 29 147 0 9 1907 1004 24 127 0 chr1 173356926 173357052 -23838380 + B1_Mus1 SINE Alu 1 142 -6 9 1907 297 0 0 0 chr1 173357055 173357088 -23838344 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1907 4110 172 76 61 chr1 173357088 173357699 -23837733 + MurERV4-int LTR ERVK 136 757 -4503 9 1907 6133 92 92 6 chr1 173357699 173358631 -23836801 - Lx2A1 LINE L1 -15 6993 5982 9 1907 4110 172 76 61 chr1 173358631 173359038 -23836394 + MurERV4-int LTR ERVK 758 1168 -4092 9 1907 1034 119 44 0 chr1 173359038 173359197 -23836235 + B2_Mm1t SINE B2 14 179 -14 9 1907 296 69 0 17 chr1 173359296 173359355 -23836077 + B2_Mm2 SINE B2 137 194 -1 9 1907 412 133 12 74 chr1 173359365 173359446 -23835986 + MurERV4-int LTR ERVK 1160 1235 -4025 9 1907 1226 98 154 27 chr1 173359469 173359689 -23835743 + MurERV4-int LTR ERVK 1345 1592 -3668 9 1907 2333 141 42 107 chr1 173359690 173359897 -23835535 + MurERV4-int LTR ERVK 1803 2009 -3251 9 1907 1304 20 0 0 chr1 173359897 173360044 -23835388 + B1_Mm SINE Alu 1 147 0 9 1907 2333 141 42 107 chr1 173360044 173360377 -23835055 + MurERV4-int LTR ERVK 2010 2308 -2952 9 1907 194 62 0 30 chr1 173360378 173360411 -23835021 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 9 1907 823 31 0 0 chr1 173360417 173360514 -23834918 - B2_Mm2 SINE B2 -97 98 2 9 1907 1133 130 70 0 chr1 173360514 173360699 -23834733 + MurERV4-int LTR ERVK 2296 2493 -2767 9 1907 309 61 0 0 chr1 173360717 173360766 -23834666 + RMER4A LTR ERVK 418 466 0 9 1907 213 39 0 0 chr1 173360808 173360834 -23834598 + (TC)n Simple_repeat Simple_repeat 1 26 0 9 1907 786 269 113 87 chr1 173360871 173360901 -23834531 + MTEa LTR MaLR 53 88 -291 9 1907 1009 109 127 0 chr1 173360901 173361066 -23834366 - B2_Mm2 SINE B2 -9 186 1 9 1907 786 269 113 87 chr1 173361066 173361345 -23834087 + MTEa LTR MaLR 89 370 -9 9 1907 488 220 64 9 chr1 173361513 173361623 -23833809 + PB1D10 SINE Alu 2 117 0 9 1907 1261 48 0 0 chr1 173361969 173362116 -23833316 + B1_Mus2 SINE Alu 1 147 0 9 1907 213 139 0 0 chr1 173362119 173362162 -23833270 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1907 333 318 77 26 chr1 173362482 173362637 -23832795 + RLTR41 LTR ERV1 125 287 -159 9 1907 1209 56 0 7 chr1 173362657 173362795 -23832637 + B1_Mus2 SINE Alu 1 138 -9 9 1907 217 25 23 70 chr1 173362795 173362838 -23832594 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1907 427 139 69 0 chr1 173362877 173362949 -23832483 + RLTR41 LTR ERV1 307 383 -63 9 1907 204 40 0 0 chr1 173362949 173362974 -23832458 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1907 1013 106 7 7 chr1 173362982 173363124 -23832308 + B1_Mus2 SINE Alu 5 146 -1 9 1907 510 216 62 94 chr1 173363145 173363177 -23832255 + B1_Mur1 SINE Alu 5 36 -113 9 1907 1655 32 0 0 chr1 173363177 173363365 -23832067 - B2_Mm1a SINE B2 -4 189 2 9 1907 510 216 62 94 chr1 173363365 173363460 -23831972 + B1_Mur1 SINE Alu 37 128 -21 9 1907 21 0 0 0 chr1 173363483 173363504 -23831928 + AT_rich Low_complexity Low_complexity 1 21 0 9 1907 258 32 0 0 chr1 173363546 173363577 -23831855 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 9 1907 337 280 35 98 chr1 173363586 173363760 -23831672 + RSINE1 SINE B4 3 165 0 9 1907 449 264 145 40 chr1 173363796 173363894 -23831538 + B4A SINE B4 2 104 -188 9 1907 1398 59 32 5 chr1 173363894 173364082 -23831350 + B2_Mm1a SINE B2 1 193 0 9 1907 449 264 145 40 chr1 173364082 173364232 -23831200 + B4A SINE B4 105 276 -16 9 1907 210 245 0 0 chr1 173364297 173364350 -23831082 + GA-rich Low_complexity Low_complexity 1 53 0 9 1907 862 194 93 22 chr1 173364584 173364910 -23830522 - MTD LTR MaLR -26 381 1 9 1907 314 232 173 101 chr1 173364947 173365086 -23830346 + B1F SINE Alu 1 149 0 9 1907 266 333 0 12 chr1 173365096 173365178 -23830254 + ID4_ SINE ID 3 83 0 9 1907 471 113 0 0 chr1 173365183 173365254 -23830178 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1907 256 164 30 90 chr1 173365256 173365323 -23830109 - B3 SINE B2 -135 63 1 9 1907 364 252 118 31 chr1 173366103 173366230 -23829202 + B1F SINE Alu 12 149 0 9 1907 954 160 0 0 chr1 173366474 173366618 -23828814 - B1_Mur2 SINE Alu -3 146 3 9 1907 231 205 0 0 chr1 173366619 173366658 -23828774 - B3A SINE B2 -157 41 3 9 1907 530 317 7 7 chr1 173366660 173366803 -23828629 - ID_B1 SINE B4 -2 222 80 9 1907 258 333 74 0 chr1 173366848 173366929 -23828503 - ID_B1 SINE B4 -5 219 133 9 1907 267 222 32 0 chr1 173366962 173367025 -23828407 + PB1D10 SINE Alu 53 117 0 9 1907 217 200 0 0 chr1 173368777 173368817 -23826615 - BC1_Mm scRNA scRNA -75 77 38 9 1907 352 311 67 8 chr1 173369071 173369191 -23826241 - MIR3 SINE MIR -52 156 30 9 1907 200 286 156 0 chr1 173369832 173369909 -23825523 + MIRc SINE MIR 119 207 -61 9 1907 681 13 0 0 chr1 173370458 173370536 -23824896 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1907 288 130 0 0 chr1 173371033 173371079 -23824353 + (TCC)n Simple_repeat Simple_repeat 3 48 0 9 1907 396 205 88 33 chr1 173371090 173371181 -23824251 - B1_Mur3 SINE Alu -2 147 52 9 1907 1147 52 0 0 chr1 173371205 173371339 -23824093 - B1_Mus2 SINE Alu -13 134 1 9 1907 270 0 0 0 chr1 173372152 173372182 -23823250 + (GCTG)n Simple_repeat Simple_repeat 2 31 0 9 1907 258 200 0 0 chr1 173372761 173372821 -23822611 + T-rich Low_complexity Low_complexity 1 60 0 9 1907 877 151 13 40 chr1 173372864 173373016 -23822416 - B1_Mur3 SINE Alu 0 149 2 9 1907 458 46 15 0 chr1 173373028 173373093 -23822339 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1907 238 273 57 0 chr1 173373388 173373476 -23821956 - Lx8 LINE L1 -360 7113 7021 9 1907 1174 68 0 7 chr1 173373483 173373631 -23821801 - B1_Mm SINE Alu 0 147 1 9 1907 2075 281 100 20 chr1 173373819 173374559 -23820873 - Lx8 LINE L1 -458 7015 6217 9 1907 716 234 19 101 chr1 173374581 173374649 -23820783 - B3A SINE B2 -6 192 135 1 1907 1041 45 80 22 chr1 173374649 173374776 -23820656 + B1_Mm SINE Alu 2 139 -8 1 1907 315 65 0 0 chr1 173374776 173374822 -23820610 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 1907 716 234 19 101 chr1 173374832 173374972 -23820460 - B3A SINE B2 -64 134 1 1 1907 200 172 0 86 chr1 173375012 173375031 -23820401 + A-rich Low_complexity Low_complexity 4 19 0 1 1907 1270 93 0 58 chr1 173375031 173375236 -23820196 + B2_Mm2 SINE B2 2 194 -1 1 1907 200 172 0 86 chr1 173375236 173375286 -23820146 + A-rich Low_complexity Low_complexity 20 67 0 1 1907 319 246 42 11 chr1 173375312 173375417 -23820015 + PB1D7 SINE Alu 6 112 -8 1 1907 741 162 33 53 chr1 173375570 173375720 -23819712 + B1_Mus1 SINE Alu 1 147 -1 1 1907 261 319 53 106 chr1 173375737 173375888 -23819544 + B4A SINE B4 78 220 -72 1 1907 813 180 14 14 chr1 173375754 173375895 -23819537 + B1_Mur3 SINE Alu 7 147 -2 1 1907 1132 117 50 6 chr1 173375957 173376138 -23819294 - B2_Mm2 SINE B2 -6 189 1 1 1907 1163 162 30 5 chr1 173376365 173376564 -23818868 + B3 SINE B2 9 212 -4 1 1907 287 299 0 0 chr1 173376597 173376674 -23818758 + ID4 SINE ID 5 81 -2 1 1907 243 154 0 25 chr1 173376744 173376784 -23818648 + MIRm SINE MIR 113 151 -125 1 1907 357 258 31 10 chr1 173377015 173377113 -23818319 + MER44D DNA MER2_type 12 111 -594 1 1907 416 262 23 47 chr1 173377129 173377257 -23818175 - ID_B1 SINE B4 -21 203 79 1 1907 627 281 55 5 chr1 173377271 173377471 -23817961 + MER44D DNA MER2_type 485 694 -11 1 1907 245 311 92 8 chr1 173377536 173377656 -23817776 + B1F1 SINE Alu 2 131 -18 1 1907 396 97 0 0 chr1 173377670 173377732 -23817700 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1907 217 250 0 48 chr1 173378022 173378085 -23817347 + C-rich Low_complexity Low_complexity 3 62 0 1 1907 297 308 13 0 chr1 173378227 173378305 -23817127 - PB1D7 SINE Alu -5 115 37 1 1907 982 111 116 12 chr1 173378351 173378515 -23816917 + URR1B DNA MER1_type 45 225 0 1 1907 1192 114 17 0 chr1 173378639 173378815 -23816617 + B2_Mm1t SINE B2 1 179 -14 1 1907 366 106 0 39 chr1 173378862 173378929 -23816503 + B2_Mm2 SINE B2 47 109 -107 1 1907 33 64 0 13 chr1 173378941 173379000 -23816432 + AT_rich Low_complexity Low_complexity 1 59 0 1 1907 1501 53 27 0 chr1 173379000 173379187 -23816245 - B2_Mm2 SINE B2 -2 193 2 1 1907 33 64 0 13 chr1 173379187 173379206 -23816226 + AT_rich Low_complexity Low_complexity 1 19 0 1 1907 546 239 93 34 chr1 173379390 173379544 -23815888 - ID_B1 SINE B4 -2 222 69 1 1907 616 275 18 18 chr1 173379667 173379830 -23815602 + RSINE1 SINE B4 3 165 0 1 1907 587 317 70 0 chr1 173379904 173380103 -23815329 + MIR SINE MIR 33 245 -17 1 1907 822 300 81 27 chr1 173380257 173380627 -23814805 - MLT1B LTR MaLR 0 390 1 1 1907 327 300 58 103 chr1 173380863 173380890 -23814542 - B1F1 SINE Alu 0 149 125 1 1907 1094 50 28 28 chr1 173380890 173381034 -23814398 + B1_Mus1 SINE Alu 1 144 -4 1 1907 327 300 58 103 chr1 173381034 173381162 -23814270 - B1F1 SINE Alu -25 124 1 1 1907 390 311 57 0 chr1 173381058 173381164 -23814268 - ID_B1 SINE B4 -33 191 80 1 1907 475 267 71 48 chr1 173381659 173381785 -23813647 + B1F2 SINE Alu 20 148 -1 1 1907 502 237 15 113 chr1 173381845 173381864 -23813568 + B3A SINE B2 23 39 -159 1 1907 1606 31 0 20 chr1 173381864 173382060 -23813372 + B2_Mm1a SINE B2 2 193 0 1 1907 527 215 26 40 chr1 173382060 173382179 -23813253 + B3 SINE B2 30 142 -56 1 1907 557 249 163 17 chr1 173382179 173382351 -23813081 + B3A SINE B2 2 198 0 1 1907 713 272 107 19 chr1 173382368 173382574 -23812858 + ID_B1 SINE B4 1 224 0 1 1907 193 346 12 24 chr1 173382812 173382895 -23812537 - L2b LINE L2 -23 3352 3271 1 1907 697 144 101 8 chr1 173382950 173383069 -23812363 - B1_Mus1 SINE Alu 0 148 19 1 1907 333 141 118 86 chr1 173383551 173383644 -23811788 - B1F2 SINE Alu -3 146 51 1 1907 236 53 0 26 chr1 173383649 173383688 -23811744 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1907 1278 34 0 0 chr1 173383689 173383836 -23811596 - B1_Mus1 SINE Alu 0 148 2 1 1907 457 260 10 0 chr1 173384125 173384221 -23811211 + PB1D10 SINE Alu 9 105 -12 1 1907 947 205 79 15 chr1 173384268 173384471 -23810961 + B3 SINE B2 1 216 0 1 1907 964 124 27 33 chr1 173384509 173384659 -23810773 - B1_Mur3 SINE Alu 0 149 1 1 1907 1235 132 5 21 chr1 173384767 173384960 -23810472 + B2_Mm2 SINE B2 1 190 -5 1 1907 416 315 64 77 chr1 173385233 173385280 -23810152 - MIR SINE MIR -15 247 208 1 1907 459 188 35 18 chr1 173385280 173385394 -23810038 - PB1D9 SINE Alu -4 116 1 1 1907 416 315 64 77 chr1 173385394 173385566 -23809866 - MIR SINE MIR -55 207 31 1 1907 210 172 17 33 chr1 173385676 173385736 -23809696 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1 1907 920 110 29 0 chr1 173385746 173385882 -23809550 - B1_Mur3 SINE Alu 0 149 10 1 1907 415 228 0 82 chr1 173385789 173385899 -23809533 - MT2B LTR ERVL -344 257 157 1 1907 506 308 17 86 chr1 173385935 173386109 -23809323 - RSINE1 SINE B4 0 165 4 1 1907 1397 68 5 30 chr1 173386229 173386267 -23809165 - B2_Mm1a SINE B2 0 193 161 1 1907 207 0 0 0 chr1 173386267 173386290 -23809142 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1907 1397 68 5 30 chr1 173386290 173386448 -23808984 - B2_Mm1a SINE B2 -33 160 2 1 1907 802 197 0 7 chr1 173386455 173386598 -23808834 - B1_Mur4 SINE Alu -7 143 2 1 1907 281 265 57 35 chr1 173386644 173386786 -23808646 + B4A SINE B4 1 143 -22 1 1907 521 275 8 8 chr1 173387022 173387143 -23808289 - LTR16A LTR ERVL -1 450 330 1 1907 353 329 92 37 chr1 173387249 173387413 -23808019 - LTR16A LTR ERVL -278 173 1 1 1907 371 277 24 0 chr1 173387507 173387590 -23807842 - B1F SINE Alu -22 127 43 1 1907 1466 69 26 0 chr1 173387594 173387783 -23807649 - B2_Mm2 SINE B2 0 195 2 1 1907 754 216 0 0 chr1 173388185 173388333 -23807099 + B1_Mus1 SINE Alu 1 148 0 1 1907 408 237 82 0 chr1 173388379 173388500 -23806932 + B3A SINE B2 1 149 -67 1 1907 1009 106 16 8 chr1 173388505 173388762 -23806670 + (CATA)n Simple_repeat Simple_repeat 1 258 0 1 1907 273 304 0 0 chr1 173389104 173389183 -23806249 + ID4 SINE ID 3 81 -2 1 1907 1296 27 0 0 chr1 173389213 173389360 -23806072 + B1_Mus1 SINE Alu 2 148 0 1 1907 183 270 65 43 chr1 173389389 173389482 -23805950 - MIR3 SINE MIR -15 193 99 1 1907 477 0 0 0 chr1 173389648 173389701 -23805731 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1907 381 337 39 43 chr1 173389857 173390065 -23805367 + MIRc SINE MIR 49 255 -13 1 1907 466 200 14 126 chr1 173392066 173392180 -23803252 - B1F1 SINE Alu -20 127 2 1 1907 1417 168 227 12 chr1 173392378 173392709 -23802723 - RMER4A LTR ERVK -64 402 1 1 1907 567 0 0 0 chr1 173393950 173394013 -23801419 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1907 1437 84 11 0 chr1 173394815 173395005 -23800427 + B2_Mm1t SINE B2 2 193 0 1 1907 1152 61 0 26 chr1 173395015 173395167 -23800265 + B1_Mus1 SINE Alu 1 148 0 1 1907 273 75 132 0 chr1 173395194 173395247 -23800185 + B2_Mm2 SINE B2 134 193 -2 1 1907 455 77 309 32 chr1 173395359 173395453 -23799979 - PB1D9 SINE Alu 0 120 1 1 1907 336 221 171 95 chr1 173395623 173395728 -23799704 - B4A SINE B4 0 292 180 1 1907 390 259 82 137 chr1 173395726 173396129 -23799303 + RMER21B LTR ERV1 63 443 -399 1 1907 250 262 192 52 chr1 173396208 173396416 -23799016 + LTR73 LTR ERV1 142 380 -192 1 1907 1234 65 77 0 chr1 173396416 173396584 -23798848 - B2_Mm2 SINE B2 -14 181 1 1 1907 367 302 79 0 chr1 173396597 173396723 -23798709 - B1F1 SINE Alu -5 144 9 1 1907 204 255 20 0 chr1 173396727 173396778 -23798654 + CT-rich Low_complexity Low_complexity 2 53 0 1 1907 252 130 0 0 chr1 173396778 173396824 -23798608 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1 1907 323 254 103 103 chr1 173396834 173396970 -23798462 - B1_Mur1 SINE Alu -5 144 9 1 1907 216 0 0 0 chr1 173397011 173397035 -23798397 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1907 350 190 139 24 chr1 173397040 173397143 -23798289 + B1_Mm SINE Alu 1 112 -5 1 1907 836 273 133 12 chr1 173397174 173397415 -23798017 + B4A SINE B4 1 270 -22 1 1907 1081 30 83 0 chr1 173397833 173397966 -23797466 + B1_Mm SINE Alu 2 145 -2 1 1907 189 0 0 0 chr1 173397967 173397988 -23797444 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1907 381 136 0 0 chr1 173398285 173398351 -23797081 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1907 492 136 0 0 chr1 173398540 173398628 -23796804 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1907 198 0 0 0 chr1 173398644 173398666 -23796766 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1907 1205 74 0 0 chr1 173398666 173398814 -23796618 - B1_Mus1 SINE Alu 0 148 1 1 1907 862 173 0 20 chr1 173398864 173399017 -23796415 + B1_Mur4 SINE Alu 1 150 0 1 1907 327 113 0 0 chr1 173399017 173399070 -23796362 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1907 1177 49 21 0 chr1 173399096 173399239 -23796193 + B1_Mus2 SINE Alu 1 146 -1 1 1907 468 0 0 0 chr1 173399690 173399742 -23795690 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 1 1907 565 275 0 34 chr1 173399743 173399890 -23795542 - B1_Mur1 SINE Alu -7 142 1 1 1907 668 277 67 0 chr1 173400279 173400474 -23794958 - ID_B1 SINE B4 -15 209 2 1 1907 733 297 64 26 chr1 173400682 173400993 -23794439 + L1MC LINE L1 5452 5774 -2108 1 1907 637 225 189 25 chr1 173401416 173401612 -23793820 + 7SK RNA RNA 19 246 -85 1 1907 1571 0 6 0 chr1 173401935 173402114 -23793318 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1 1907 1030 68 14 0 chr1 173402115 173402263 -23793169 + (GGGAGA)n Simple_repeat Simple_repeat 5 154 0 1 1907 1209 41 0 7 chr1 173402315 173402463 -23792969 + B1_Mus2 SINE Alu 1 147 0 1 1907 626 146 51 60 chr1 173402487 173402604 -23792828 - B1_Mus2 SINE Alu 0 149 34 1 1907 189 0 0 0 chr1 173402891 173402912 -23792520 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1907 321 87 368 47 chr1 173402914 173403020 -23792412 - B2_Mm2 SINE B2 -9 186 47 1 1907 1203 114 11 22 chr1 173403086 173403266 -23792166 - B2_Mm1t SINE B2 -14 179 2 1 1907 642 243 21 28 chr1 173403280 173403424 -23792008 - B1F SINE Alu -6 143 1 1 1907 309 298 84 53 chr1 173403314 173403445 -23791987 - B4 SINE B4 -94 198 64 1 1907 351 0 0 0 chr1 173403624 173403663 -23791769 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1907 592 279 7 26 chr1 173403755 173403906 -23791526 - MER67B LTR ERV1 -461 200 53 1 1907 883 284 66 44 chr1 173403905 173404178 -23791254 - B4 SINE B4 -8 284 6 1 1907 227 116 47 0 chr1 173404295 173404338 -23791094 + CT-rich Low_complexity Low_complexity 4 48 0 1 1907 798 256 32 36 chr1 173404345 173404564 -23790868 - ID_B1 SINE B4 -5 219 2 1 1907 776 212 56 79 chr1 173405009 173405224 -23790208 + B3 SINE B2 1 210 -6 1 1907 1140 87 30 0 chr1 173405230 173405562 -23789870 + (GAAA)n Simple_repeat Simple_repeat 1 342 0 1 1907 707 71 0 39 chr1 173405580 173405682 -23789750 + BC1_Mm scRNA scRNA 6 103 -49 1 1907 830 155 0 0 chr1 173406170 173406299 -23789133 - B1_Mur4 SINE Alu 0 150 22 1 1907 381 273 36 107 chr1 173406215 173406383 -23789049 - MT2B LTR ERVL -344 257 102 1 1907 255 271 0 17 chr1 173406802 173406862 -23788570 + polypyrimidine Low_complexity Low_complexity 4 62 0 1 1907 341 274 0 70 chr1 173406900 173406914 -23788518 - PB1D10 SINE Alu 0 117 106 1 1907 1261 41 0 0 chr1 173406914 173407061 -23788371 - B1_Mus2 SINE Alu 0 147 1 1 1907 341 274 0 70 chr1 173407061 173407160 -23788272 - PB1D10 SINE Alu -12 105 13 1 1907 383 314 16 32 chr1 173407160 173407186 -23788246 - ID_B1 SINE B4 -34 190 68 1 1907 513 0 0 0 chr1 173407651 173407708 -23787724 + (CAG)n Simple_repeat Simple_repeat 3 59 0 1 1907 222 37 0 0 chr1 173407910 173407937 -23787495 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1907 234 253 0 0 chr1 173408067 173408150 -23787282 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1908 230 160 0 57 chr1 173408463 173408516 -23786916 + B2_Mm1t SINE B2 2 51 -142 1 1908 380 186 105 0 chr1 173408701 173408787 -23786645 - PB1D9 SINE Alu 0 120 26 1 1908 227 293 53 0 chr1 173408784 173408859 -23786573 - ID_B1 SINE B4 0 224 146 1 1908 212 149 0 41 chr1 173408865 173408880 -23786552 + A-rich Low_complexity Low_complexity 1 14 0 1 1908 1065 96 7 0 chr1 173408880 173409026 -23786406 + B1_Mus2 SINE Alu 1 147 0 1 1908 212 149 0 41 chr1 173409026 173409059 -23786373 + A-rich Low_complexity Low_complexity 15 47 0 1 1908 673 188 199 34 chr1 173409244 173409420 -23786012 + B3 SINE B2 9 213 -3 1 1908 487 174 167 46 chr1 173409516 173409636 -23785796 + B1_Mur4 SINE Alu 7 142 -8 1 1908 195 42 0 0 chr1 173409636 173409660 -23785772 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1908 443 379 45 36 chr1 173409995 173410326 -23785106 + L1ME4a LINE L1 5535 5868 -256 1 1908 1205 88 38 16 chr1 173410637 173410822 -23784610 - B2_Mm2 SINE B2 -6 189 1 1 1908 945 166 119 36 chr1 173410981 173411175 -23784257 + B3 SINE B2 1 210 -6 1 1908 1602 70 66 0 chr1 173411276 173411504 -23783928 + RLTR4_Mm LTR ERV1 1 243 -499 1 1908 2137 81 0 20 chr1 173411506 173411807 -23783625 + RLTR4_Mm LTR ERV1 448 742 0 1 1908 64178 42 3 3 chr1 173411809 173414862 -23780570 + MuLV-int LTR ERV1 1 3080 -4526 1 1908 180 222 121 45 chr1 173414862 173414928 -23780504 + L2 LINE L2 227 297 -3122 1 1908 64178 42 3 3 chr1 173414928 173419413 -23776019 + MuLV-int LTR ERV1 3081 7606 0 1 1908 1602 70 66 0 chr1 173419415 173419643 -23775789 + RLTR4_Mm LTR ERV1 1 243 -499 1 1908 2137 81 0 20 chr1 173419645 173419946 -23775486 + RLTR4_Mm LTR ERV1 448 742 0 1 1908 642 154 94 0 chr1 173419946 173420019 -23775413 + B1_Mur4 SINE Alu 13 86 -64 1 1908 975 18 0 0 chr1 173420019 173420132 -23775300 + (GA)n Simple_repeat Simple_repeat 1 113 0 1 1908 642 154 94 0 chr1 173420132 173420175 -23775257 + B1_Mur4 SINE Alu 87 139 -11 1 1908 309 258 0 58 chr1 173420587 173420776 -23774656 + (CGGAG)n Simple_repeat Simple_repeat 1 178 0 1 1908 243 125 236 0 chr1 173420728 173420872 -23774560 + (CAGAG)n Simple_repeat Simple_repeat 1 178 0 1 1908 456 310 18 55 chr1 173420874 173421038 -23774394 - Tigger7 DNA MER2_type -2316 175 18 1 1908 3594 72 19 4 chr1 173421366 173421841 -23773591 - RLTR45 LTR ERVK 0 482 1 1 1908 247 25 0 48 chr1 173422172 173422214 -23773218 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1908 266 229 144 18 chr1 173422294 173422405 -23773027 - MER57A-int LTR ERV1 -243 5944 5820 1 1908 983 141 41 6 chr1 173422422 173422593 -23772839 - B2_Mm2 SINE B2 -14 181 5 1 1908 3014 60 2 104 chr1 173422607 173422840 -23772592 - MTB_Mm LTR MaLR 0 407 191 1 1908 1462 88 0 25 chr1 173422840 173423039 -23772393 - B2_Mm2 SINE B2 0 195 2 1 1908 1227 44 0 0 chr1 173423047 173423205 -23772227 + (TTTC)n Simple_repeat Simple_repeat 4 161 0 1 1908 1048 37 0 82 chr1 173423205 173423352 -23772080 - B1_Mus2 SINE Alu -12 135 1 1 1908 3014 60 2 104 chr1 173423352 173423558 -23771874 - MTB_Mm LTR MaLR -217 190 5 1 1908 507 197 116 43 chr1 173423582 173423600 -23771832 - B3 SINE B2 -11 205 184 1 1908 414 57 0 0 chr1 173423600 173423653 -23771779 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1908 507 197 116 43 chr1 173423653 173423772 -23771660 - B3 SINE B2 -33 183 58 1 1908 648 184 49 14 chr1 173423786 173423929 -23771503 - B1_Mur2 SINE Alu -1 148 1 1 1908 393 22 0 0 chr1 173423957 173424003 -23771429 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1 1908 906 45 0 0 chr1 173424003 173424114 -23771318 - B2_Mm1t SINE B2 -81 112 2 1 1908 1386 263 67 55 chr1 173424676 173425170 -23770262 - RMER5 LTR ERV1 -1 533 34 1 1908 231 61 0 0 chr1 173425188 173425221 -23770211 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1908 637 220 0 0 chr1 173425387 173425496 -23769936 - PB1D9 SINE Alu -2 118 10 1 1908 322 211 0 135 chr1 173425420 173425524 -23769908 - MT2B LTR ERVL -361 240 151 1 1908 1052 106 64 6 chr1 173425602 173425773 -23769659 + B2_Mm2 SINE B2 1 181 -14 1 1908 428 0 19 0 chr1 173426071 173426123 -23769309 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 1 1908 252 305 73 0 chr1 173426320 173426402 -23769030 - BC1_Mm scRNA scRNA -56 96 9 1 1908 1428 83 5 20 chr1 173426519 173426531 -23768901 - B2_Mm2 SINE B2 -1 194 184 1 1908 1250 83 0 11 chr1 173426531 173426713 -23768719 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1908 1428 83 5 20 chr1 173426713 173426897 -23768535 - B2_Mm2 SINE B2 -12 183 1 1 1908 1330 83 28 0 chr1 173426924 173427104 -23768328 - B2_Mm1t SINE B2 -8 185 1 1 1908 3846 182 59 49 chr1 173427104 173427235 -23768197 - RMER19B LTR ERVK -16 886 755 1 1908 1229 48 0 0 chr1 173427235 173427382 -23768050 + B1_Mm SINE Alu 1 147 0 1 1908 3846 182 59 49 chr1 173427382 173428127 -23767305 - RMER19B LTR ERVK -148 754 1 1 1908 824 206 11 54 chr1 173428335 173428520 -23766912 - B3A SINE B2 -6 192 16 1 1908 3200 48 15 2 chr1 173428707 173429102 -23766330 - MTB LTR MaLR 0 400 1 1 1908 23 33 0 0 chr1 173429737 173429767 -23765665 + AT_rich Low_complexity Low_complexity 1 30 0 1 1908 1528 238 79 20 chr1 173430039 173430396 -23765036 + MTD LTR MaLR 1 385 -34 1 1908 3266 103 166 12 chr1 173430396 173430914 -23764518 + MT2B LTR ERVL 1 598 -3 1 1908 1528 238 79 20 chr1 173430914 173430950 -23764482 + MTD LTR MaLR 386 417 -2 1 1908 886 254 124 55 chr1 173431226 173431572 -23763860 + ORR1D2 LTR MaLR 1 370 0 1 1908 1510 37 21 0 chr1 173432219 173432408 -23763024 - B2_Mm1t SINE B2 0 193 1 1 1908 262 250 150 0 chr1 173432649 173432729 -23762703 - B3 SINE B2 -11 205 114 1 1908 23 0 0 0 chr1 173432801 173432824 -23762608 + AT_rich Low_complexity Low_complexity 1 23 0 1 1908 909 60 0 8 chr1 173433177 173433294 -23762138 - U5 snRNA snRNA 0 116 1 1 1908 189 0 0 0 chr1 173434603 173434624 -23760808 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1908 246 236 0 68 chr1 173434897 173434956 -23760476 + ID4_ SINE ID 10 64 -19 1 1908 221 175 25 0 chr1 173435115 173435155 -23760277 + B1_Mur4 SINE Alu 100 140 -10 1 1908 467 169 0 0 chr1 173435219 173435302 -23760130 - RMER1C Other Other 0 1342 1260 1 1908 1226 48 0 13 chr1 173435343 173435492 -23759940 - B1_Mus1 SINE Alu 0 148 2 1 1908 4501 139 78 73 chr1 173435492 173435715 -23759717 - RMER19B LTR ERVK -16 886 664 1 1908 2486 65 134 11 chr1 173435715 173436089 -23759343 + BGLII LTR ERVK 2 421 0 1 1908 4501 139 78 73 chr1 173436089 173436745 -23758687 - RMER19B LTR ERVK -239 663 1 1 1908 306 0 0 0 chr1 173436816 173436850 -23758582 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1908 2185 249 46 45 chr1 173436862 173438016 -23757416 - RMER1C Other Other -117 1225 97 1 1908 285 315 35 61 chr1 173438354 173438469 -23756963 - ID_B1 SINE B4 -29 195 84 1 1908 229 272 33 100 chr1 173438596 173438628 -23756804 + B4 SINE B4 71 133 -159 1 1908 311 125 0 20 chr1 173438628 173438677 -23756755 + B1F1 SINE Alu 10 57 -92 1 1908 2120 124 8 22 chr1 173438671 173439035 -23756397 - RMER17A2 LTR ERVK -191 715 357 1 1908 396 109 0 0 chr1 173439194 173439249 -23756183 + MTEa LTR MaLR 2 56 -323 1 1908 466 175 115 10 chr1 173439375 173439479 -23755953 - PB1D9 SINE Alu -5 115 1 1 1908 273 277 0 15 chr1 173439422 173439488 -23755944 - B4 SINE B4 -151 141 77 1 1908 623 307 92 55 chr1 173439635 173439907 -23755525 - B4A SINE B4 -3 289 8 1 1908 771 152 79 14 chr1 173439959 173440099 -23755333 + B1_Mur3 SINE Alu 1 149 0 1 1908 315 327 103 13 chr1 173440155 173440310 -23755122 - L1MEg LINE L1 -5307 777 609 1 1908 33 0 0 0 chr1 173440337 173440370 -23755062 + AT_rich Low_complexity Low_complexity 1 33 0 1 1908 773 146 51 68 chr1 173440371 173440547 -23754885 - RMER1B Other Other 0 1066 894 1 1908 3610 42 2 7 chr1 173440547 173441001 -23754431 - LTRIS_Mus LTR ERV1 0 587 136 1 1908 1107 56 0 0 chr1 173441002 173441144 -23754288 + B1_Mus2 SINE Alu 6 147 0 1 1908 1206 79 0 41 chr1 173441156 173441327 -23754105 - LTRIS_Mus LTR ERV1 -423 164 1 1 1908 1064 180 26 0 chr1 173441328 173441522 -23753910 - RMER1B Other Other -170 896 698 1 1908 942 121 5 98 chr1 173441523 173441707 -23753725 + IAPLTR2_Mm LTR ERVK 309 475 0 1 1908 492 207 51 23 chr1 173441721 173441865 -23753567 - RMER19A LTR ERVK -425 186 9 1 1908 558 105 0 0 chr1 173441843 173441919 -23753513 - B1_Mus1 SINE Alu -69 79 4 1 1908 376 220 0 99 chr1 173441919 173441944 -23753488 - MT2B LTR ERVL -366 235 145 1 1908 519 219 10 0 chr1 173442047 173442141 -23753291 + B3A SINE B2 1 95 -103 1 1908 550 271 55 46 chr1 173442141 173442303 -23753129 + RLTR15 LTR ERVK 1 160 -368 1 1908 594 0 0 0 chr1 173442303 173442369 -23753063 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1908 550 271 55 46 chr1 173442369 173442423 -23753009 + RLTR15 LTR ERVK 161 219 -309 1 1908 578 264 83 32 chr1 173442398 173442690 -23752742 + RLTR15 LTR ERVK 65 525 -3 1 1908 299 263 57 66 chr1 173442690 173442795 -23752637 + B3A SINE B2 103 206 -10 1 1908 669 277 53 24 chr1 173442823 173443030 -23752402 + MLT1C LTR MaLR 1 213 -254 1 1908 406 116 0 28 chr1 173443119 173443190 -23752242 + RMER6B LTR ERVK 1 69 -392 1 1908 840 76 0 0 chr1 173443188 173443293 -23752139 + B1_Mus1 SINE Alu 34 138 -10 1 1908 215 31 31 0 chr1 173443293 173443325 -23752107 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1908 365 230 0 84 chr1 173443536 173443631 -23751801 + B3A SINE B2 105 191 -7 1 1908 1015 216 64 80 chr1 173444330 173444433 -23750999 + RLTR14 LTR ERV1 1 106 -276 1 1908 1086 97 0 7 chr1 173444433 173444573 -23750859 + B1_Mus2 SINE Alu 2 141 -6 1 1908 678 13 0 0 chr1 173444573 173444652 -23750780 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1908 1015 216 64 80 chr1 173444657 173444941 -23750491 + RLTR14 LTR ERV1 107 382 0 1 1908 4224 140 35 12 chr1 173446003 173446740 -23748692 - RMER6A LTR ERVK -2 754 1 1 1908 296 331 51 19 chr1 173447173 173447330 -23748102 - MIR SINE MIR -71 191 30 1 1908 1403 53 5 87 chr1 173447555 173447762 -23747670 + B2_Mm1a SINE B2 1 190 -3 1 1908 21 57 0 0 chr1 173448026 173448061 -23747371 + AT_rich Low_complexity Low_complexity 1 35 0 1 1908 37742 26 1 8 chr1 173448793 173453984 -23741448 + L1Md_T LINE L1 438 5586 -297 1 1908 8671 30 0 0 chr1 173453984 173454980 -23740452 + L1Md_T LINE L1 5587 6582 0 1 1908 302 309 98 106 chr1 173455082 173455286 -23740146 - B4A SINE B4 -90 202 3 1 1908 379 252 49 0 chr1 173456265 173456388 -23739044 + L1MA6 LINE L1 6008 6136 -164 1 1908 526 261 109 112 chr1 173456411 173456868 -23738564 + RLTR12B LTR ERVK 42 497 -31 1 1908 311 285 62 0 chr1 173456902 173457032 -23738400 + L1MA6 LINE L1 6134 6271 -29 1 1908 231 200 55 0 chr1 173457658 173457713 -23737719 + ID_B1 SINE B4 166 223 -1 1 1908 243 319 33 8 chr1 173457770 173457890 -23737542 - BC1_Mm scRNA scRNA -29 123 1 1 1908 333 0 0 0 chr1 173458388 173458425 -23737007 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1908 769 245 43 43 chr1 173459015 173459224 -23736208 + B3A SINE B2 8 216 0 1 1908 796 174 0 0 chr1 173459483 173459615 -23735817 + B1_Mus1 SINE Alu 10 141 -7 1 1908 229 176 0 42 chr1 173459630 173459701 -23735731 + GA-rich Low_complexity Low_complexity 2 69 0 1 1908 744 98 23 8 chr1 173459691 173459824 -23735608 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 1 1908 231 170 0 0 chr1 173460225 173460272 -23735160 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1908 421 317 30 0 chr1 173460341 173460508 -23734924 + MIR SINE MIR 29 200 -62 1 1908 315 119 20 61 chr1 173460878 173460976 -23734456 + C-rich Low_complexity Low_complexity 1 94 0 1 1908 453 257 81 0 chr1 173462100 173462248 -23733184 + L1MB4 LINE L1 5586 5745 -435 1 1908 1169 44 0 6 chr1 173462267 173462428 -23733004 + (GAA)n Simple_repeat Simple_repeat 3 162 0 1 1908 466 318 32 32 chr1 173462505 173462690 -23732742 + B3A SINE B2 2 186 -12 1 1908 600 233 253 26 chr1 173462743 173463012 -23732420 + L1MB4 LINE L1 5843 6172 -8 1 1908 657 228 24 18 chr1 173463056 173463226 -23732206 + B2_Mm2 SINE B2 1 171 -24 1 1908 699 99 0 0 chr1 173463231 173463332 -23732100 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1 1908 314 200 112 45 chr1 173463380 173463469 -23731963 - PB1D10 SINE Alu 0 117 23 1 1908 21 71 0 0 chr1 173464584 173464626 -23730806 + AT_rich Low_complexity Low_complexity 1 42 0 1 1908 585 202 0 26 chr1 173464647 173464764 -23730668 + B1_Mus2 SINE Alu 19 132 -15 1 1908 301 22 21 21 chr1 173465050 173465097 -23730335 + (TTTTTA)n Simple_repeat Simple_repeat 2 48 0 1 1908 1232 27 0 0 chr1 173465100 173465246 -23730186 - B1_Mm SINE Alu 0 147 2 1 1908 243 0 0 0 chr1 173465771 173465798 -23729634 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1908 395 279 26 18 chr1 173465827 173465940 -23729492 + RLTR21 LTR ERVK 1 114 -1458 1 1908 1037 132 0 0 chr1 173465940 173466084 -23729348 - B1_Mur4 SINE Alu -6 144 1 1 1908 393 303 127 36 chr1 173466086 173466418 -23729014 - L1M5 LINE L1 -1772 4374 4013 1 1908 412 271 164 25 chr1 173466457 173466616 -23728816 - B3A SINE B2 -16 182 2 1 1908 702 279 106 62 chr1 173466774 173466823 -23728609 - B4A SINE B4 -24 268 223 1 1908 7052 35 0 0 chr1 173466823 173467639 -23727793 - L1Md_T LINE L1 0 6582 5767 1 1908 702 279 106 62 chr1 173467639 173467845 -23727587 - B4A SINE B4 -70 222 2 1 1908 2328 188 30 8 chr1 173468128 173468637 -23726795 + RLTR11A2 LTR ERVK 8 527 0 1 1908 5788 112 14 54 chr1 173469200 173470140 -23725292 + RLTR13D6 LTR ERVK 1 902 0 1 1908 356 304 39 0 chr1 173471077 173471179 -23724253 + RSINE1 SINE B4 60 165 0 1 1908 1438 121 15 34 chr1 173471467 173471733 -23723699 - BGLII_B LTR ERVK -180 261 1 1 1908 266 164 36 0 chr1 173471733 173471788 -23723644 - MYSERV16_I-int LTR ERVK 0 2326 2270 1 1908 8086 209 58 42 chr1 173472086 173474426 -23721006 - MYSERV16_I-int LTR ERVK -349 2828 5 1 1908 1528 157 79 13 chr1 173474435 173474738 -23720694 - RMER19B LTR ERVK -36 866 544 1 1908 1374 176 12 4 chr1 173474740 173474997 -23720435 - RLTR1 LTR ERV1 0 624 366 1 1908 544 238 102 27 chr1 173475287 173475473 -23719959 - RMER19B LTR ERVK -364 538 339 1 1908 792 198 154 0 chr1 173475500 173475682 -23719750 - RMER19B LTR ERVK -681 221 12 1 1908 277 207 36 24 chr1 173475977 173476061 -23719371 + MTEb LTR MaLR 294 378 -1 1 1908 366 171 0 0 chr1 173476321 173476391 -23719041 + CT-rich Low_complexity Low_complexity 1 70 0 1 1908 1022 92 7 0 chr1 173476392 173476544 -23718888 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 1 1908 680 226 16 53 chr1 173476599 173476771 -23718661 - MT2B2 LTR ERVL 0 584 420 1 1908 3589 145 86 97 chr1 173476771 173477484 -23717948 - RMER21B LTR ERV1 -2 840 122 1 1908 369 0 0 0 chr1 173477484 173477525 -23717907 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1908 3589 145 86 97 chr1 173477525 173477660 -23717772 - RMER21B LTR ERV1 -721 121 2 1 1908 384 284 111 36 chr1 173477675 173478010 -23717422 - MT2B2 LTR ERVL -233 300 2 1 1908 559 177 9 26 chr1 173478119 173478235 -23717197 - RMER4A LTR ERVK 0 466 353 1 1908 226 250 0 0 chr1 173478514 173478562 -23716870 - PB1D9 SINE Alu -70 50 3 1 1908 641 229 184 23 chr1 173478603 173478777 -23716655 - ID_B1 SINE B4 -10 214 13 1 1908 920 195 103 0 chr1 173478814 173478999 -23716433 - B3 SINE B2 -5 211 8 1 1908 297 342 75 111 chr1 173479021 173479392 -23716040 - L1M5 LINE L1 -511 5729 5372 1 1908 441 253 182 57 chr1 173479453 173479700 -23715732 - B4A SINE B4 -13 279 2 1 1908 334 275 128 93 chr1 173479700 173479989 -23715443 - L1M5 LINE L1 -743 5403 5105 1 1908 1226 130 11 0 chr1 173480023 173480207 -23715225 - B2_Mm1t SINE B2 -7 186 1 1 1908 204 156 0 22 chr1 173480208 173480254 -23715178 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1908 243 103 0 0 chr1 173480383 173480422 -23715010 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1908 289 189 177 63 chr1 173480448 173480513 -23714919 - B1F2 SINE Alu -38 111 34 1 1908 3680 61 73 2 chr1 173480513 173480991 -23714441 - RLTR1B LTR ERV1 0 512 1 1 1908 289 189 177 63 chr1 173480991 173481004 -23714428 - B1F2 SINE Alu -116 33 24 1 1908 24 0 0 0 chr1 173481016 173481040 -23714392 + AT_rich Low_complexity Low_complexity 1 24 0 1 1908 240 297 14 0 chr1 173482373 173482447 -23712985 - RSINE1 SINE B4 -86 79 5 1 1908 4176 54 8 0 chr1 173482823 173483322 -23712110 - RLTR1C LTR ERV1 0 503 1 1 1908 2529 94 142 4 chr1 173483376 173483877 -23711555 - RMER17D2 LTR ERVK -239 570 1 1 1908 294 95 0 0 chr1 173484092 173484134 -23711298 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1908 564 239 64 14 chr1 173484380 173484520 -23710912 + B1F SINE Alu 3 149 0 1 1908 181 155 17 17 chr1 173484520 173484579 -23710853 + A-rich Low_complexity Low_complexity 1 59 0 1 1908 828 290 90 12 chr1 173484883 173485204 -23710228 + MER77 LTR ERVL 41 386 -221 1 1908 1389 91 0 16 chr1 173485257 173485447 -23709985 - B2_Mm2 SINE B2 -8 187 1 1 1908 279 79 0 0 chr1 173485999 173486037 -23709395 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 1 1908 316 331 87 99 chr1 173486871 173487145 -23708287 - MLT1A0 LTR MaLR -6 359 88 1 1908 1286 121 11 0 chr1 173487145 173487335 -23708097 - B2_Mm1t SINE B2 0 193 2 1 1908 316 331 87 99 chr1 173487335 173487415 -23708017 - MLT1A0 LTR MaLR -278 87 10 1 1908 580 208 33 0 chr1 173487478 173487598 -23707834 + B1_Mus2 SINE Alu 24 147 0 1 1908 713 186 249 6 chr1 173487635 173487808 -23707624 + B3 SINE B2 2 216 0 1 1908 1200 93 49 11 chr1 173487855 173488040 -23707392 - B2_Mm2 SINE B2 0 195 4 1 1908 516 16 0 0 chr1 173488192 173488253 -23707179 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1908 406 309 73 0 chr1 173488261 173488384 -23707048 - RSINE1 SINE B4 -31 134 3 1 1908 237 286 94 12 chr1 173488399 173488484 -23706948 - MIRb SINE MIR -139 129 38 1 1908 228 229 0 0 chr1 173491079 173491127 -23704305 - ID SINE ID -169 55 8 1 1908 211 191 0 0 chr1 173491788 173491830 -23703602 + C-rich Low_complexity Low_complexity 1 42 0 1 1908 228 176 130 90 chr1 173492551 173492651 -23702781 - Lx8 LINE L1 -2 7471 7368 1 1908 477 0 0 0 chr1 173492671 173492724 -23702708 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1908 244 315 0 40 chr1 173492778 173492854 -23702578 - Lx8 LINE L1 -251 7222 7150 1 1908 1063 203 50 0 chr1 173493179 173493381 -23702051 - ID_B1 SINE B4 -10 214 3 1 1908 31 0 0 0 chr1 173493390 173493421 -23702011 + AT_rich Low_complexity Low_complexity 1 31 0 1 1908 252 0 0 0 chr1 173493426 173493454 -23701978 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1908 454 291 52 0 chr1 173493460 173493594 -23701838 - RSINE1 SINE B4 -23 142 2 1 1908 189 74 0 0 chr1 173493778 173493805 -23701627 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1908 836 138 27 27 chr1 173493805 173493943 -23701489 - B1_Mur4 SINE Alu -10 140 2 1 1908 2727 197 99 40 chr1 173494449 173495205 -23700227 + MTC-int LTR MaLR 458 1258 0 1 1908 1916 204 17 10 chr1 173495210 173495615 -23699817 + MTC LTR MaLR 6 413 -8 1 1908 24 0 0 0 chr1 173496747 173496771 -23698661 + AT_rich Low_complexity Low_complexity 1 24 0 1 1908 708 243 68 24 chr1 173496924 173497131 -23698301 + MER20 DNA MER1_type 3 218 -1 1 1908 392 252 238 0 chr1 173497245 173497451 -23697981 - L1M2 LINE L1 -1508 4635 4381 1 1908 227 291 97 21 chr1 173497429 173497573 -23697859 - L1_Mur2 LINE L1 -3528 2349 2195 1 1908 406 226 7 7 chr1 173497582 173497720 -23697712 + CT-rich Low_complexity Low_complexity 2 139 0 1 1908 555 206 0 0 chr1 173497720 173497822 -23697610 - ID_B1 SINE B4 -14 210 109 1 1908 892 235 5 5 chr1 173499284 173499472 -23695960 - ID_B1 SINE B4 -3 221 34 1 1908 375 229 134 10 chr1 173499843 173499940 -23695492 + PB1D10 SINE Alu 1 109 -8 1 1908 334 232 11 0 chr1 173500000 173500090 -23695342 + B4A SINE B4 46 214 -78 1 1908 524 285 44 113 chr1 173500095 173500342 -23695090 + B4A SINE B4 2 233 -59 2 1908 2712 44 2 172 chr1 173500342 173500808 -23694624 + RLTR10 LTR ERVK 1 387 -3 3 1908 524 285 44 113 chr1 173500808 173500853 -23694579 + B4A SINE B4 234 274 -18 2 1908 244 0 0 53 chr1 173501149 173501187 -23694245 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1908 420 99 0 0 chr1 173502158 173502229 -23693203 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1908 235 167 37 49 chr1 173502272 173502354 -23693078 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1908 190 56 27 27 chr1 173502487 173502524 -23692908 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1908 21 0 0 0 chr1 173502806 173502827 -23692605 + AT_rich Low_complexity Low_complexity 1 21 0 8 1908 1019 156 196 0 chr1 173502827 173503006 -23692426 - B3 SINE B2 0 216 3 9 1908 311 0 0 25 chr1 173503013 173503053 -23692379 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1908 1135 51 0 0 chr1 173503053 173503190 -23692242 - B1_Mus1 SINE Alu -10 138 2 1 1908 582 282 61 97 chr1 173503330 173503499 -23691933 + B3A SINE B2 1 168 -30 1 1908 489 80 0 0 chr1 173503499 173503574 -23691858 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1908 459 282 61 97 chr1 173503574 173503600 -23691832 + B2_Mm2 SINE B2 168 189 -6 1 1908 238 253 35 24 chr1 173504998 173505083 -23690349 + (CAACC)n Simple_repeat Simple_repeat 2 87 0 1 1908 541 151 40 23 chr1 173505099 173505275 -23690157 + (CAACC)n Simple_repeat Simple_repeat 2 180 0 1 1908 327 160 41 32 chr1 173505337 173505460 -23689972 + (CAACC)n Simple_repeat Simple_repeat 3 126 0 1 1908 298 364 17 58 chr1 173506738 173506910 -23688522 + MIRb SINE MIR 65 229 -39 1 1908 204 125 0 0 chr1 173508379 173508411 -23687021 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1908 332 293 71 30 chr1 173509701 173509848 -23685584 - MIR SINE MIR -99 177 17 1 1908 191 146 24 0 chr1 173510026 173510067 -23685365 + CT-rich Low_complexity Low_complexity 4 45 0 1 1908 711 54 0 0 chr1 173510097 173510189 -23685243 + (TCCCC)n Simple_repeat Simple_repeat 4 95 0 1 1908 205 281 0 17 chr1 173510552 173510610 -23684822 + CT-rich Low_complexity Low_complexity 3 59 0 2 1908 280 323 0 0 chr1 173512417 173512482 -23682950 - ID4_ SINE ID -10 73 9 2 1908 260 366 84 30 chr1 173512727 173512893 -23682539 + MIRc SINE MIR 20 194 -74 2 1908 21 0 0 0 chr1 173513356 173513377 -23682055 + AT_rich Low_complexity Low_complexity 1 21 0 2 1908 557 326 7 0 chr1 173513377 173513518 -23681914 - ID_B1 SINE B4 -2 222 81 2 1908 33 25 0 0 chr1 173513649 173513689 -23681743 + AT_rich Low_complexity Low_complexity 1 40 0 2 1908 618 269 0 0 chr1 173514178 173514312 -23681120 - B1_Mur1 SINE Alu -14 135 2 2 1908 580 217 79 7 chr1 173514636 173514775 -23680657 - B1_Mur2 SINE Alu 0 149 1 2 1908 916 164 0 0 chr1 173515270 173515410 -23680022 + B1_Mur4 SINE Alu 1 140 -10 2 1908 783 231 30 79 chr1 173515440 173515642 -23679790 + B3A SINE B2 6 197 -1 2 1908 543 151 0 0 chr1 173515691 173515784 -23679648 + (TAG)n Simple_repeat Simple_repeat 2 94 0 3 1908 1965 119 43 135 chr1 173515785 173516222 -23679210 - RMER10B LTR ERVL -1 397 1 3 1908 332 330 25 28 chr1 173516374 173516519 -23678913 - RSINE1 SINE B4 -142 150 4 3 1908 357 307 26 17 chr1 173517097 173517213 -23678219 - PB1D10 SINE Alu 0 117 1 3 1908 556 266 21 14 chr1 173517240 173517381 -23678051 + B4A SINE B4 1 142 -150 3 1908 25 31 0 0 chr1 173517543 173517575 -23677857 + AT_rich Low_complexity Low_complexity 1 32 0 3 1908 414 0 0 0 chr1 173517590 173517636 -23677796 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 1908 1377 62 28 0 chr1 173517637 173517813 -23677619 - B2_Mm2 SINE B2 -14 181 1 3 1908 337 350 152 10 chr1 173517929 173518222 -23677210 - L1MC4a LINE L1 -134 5990 5666 3 1908 1785 108 56 4 chr1 173518447 173518716 -23676716 - ORR1C1 LTR MaLR 0 378 96 3 1908 22 35 0 0 chr1 173518750 173518779 -23676653 + AT_rich Low_complexity Low_complexity 1 29 0 4 1908 1006 142 183 0 chr1 173518780 173518977 -23676455 - Lx5 LINE L1 -4 7046 6814 4 1908 251 273 18 0 chr1 173520162 173520217 -23675215 - PB1D10 SINE Alu -15 102 47 4 1908 1573 276 103 56 chr1 173522168 173522534 -23672898 + L1M2 LINE L1 4249 4634 -1509 4 1908 447 19 0 0 chr1 173522534 173522586 -23672846 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1908 1573 274 114 50 chr1 173522586 173523193 -23672239 + L1M2 LINE L1 4635 5282 -861 4 1908 267 31 0 0 chr1 173523208 173523240 -23672192 + (CAG)n Simple_repeat Simple_repeat 1 32 0 4 1908 213 319 108 68 chr1 173524601 173524823 -23670609 - L2c LINE L2 -45 3342 3112 4 1908 223 238 239 29 chr1 173525153 173525271 -23670161 - MIR SINE MIR -125 143 4 4 1908 181 372 158 14 chr1 173525336 173525475 -23669957 - MIRb SINE MIR -66 202 44 4 1908 237 400 52 9 chr1 173525781 173525897 -23669535 + Charlie15a DNA MER1_type 65 185 -39 4 1908 1113 147 131 0 chr1 173525948 173526146 -23669286 - URR1A DNA MER1_type 0 226 3 5 1908 457 297 103 0 chr1 173526418 173526563 -23668869 - MER5A1 DNA MER1_type -6 160 1 5 1908 303 383 23 30 chr1 173527018 173527150 -23668282 + MLT1K LTR MaLR 173 303 -292 5 1908 181 182 87 43 chr1 173527321 173527367 -23668065 - L4 LINE RTE -1299 730 683 5 1908 1030 217 25 0 chr1 173527404 173527607 -23667825 + B3 SINE B2 2 209 -7 5 1908 204 301 85 57 chr1 173528363 173528504 -23666928 + MIRb SINE MIR 50 194 -74 5 1908 242 309 24 113 chr1 173528514 173528559 -23666873 + MT2B LTR ERVL 126 159 -442 5 1908 516 227 71 29 chr1 173528559 173528702 -23666730 + B1_Mur1 SINE Alu 1 148 -1 5 1908 543 275 132 24 chr1 173528907 173529194 -23666238 + Charlie5 DNA MER1_type 2242 2559 -65 5 1908 700 291 27 62 chr1 173529186 173529410 -23666022 - ID_B1 SINE B4 0 224 9 5 1908 429 20 0 0 chr1 173529417 173529467 -23665965 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1908 258 310 55 10 chr1 173529467 173529571 -23665861 - B1F SINE Alu -15 105 1 6 1908 207 100 0 0 chr1 173529741 173529771 -23665661 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 6 1908 386 336 47 23 chr1 173530100 173530186 -23665246 + RSINE1 SINE B4 34 119 -46 6 1908 572 0 15 0 chr1 173530186 173530254 -23665178 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1908 306 0 0 0 chr1 173530254 173530287 -23665145 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1908 386 336 47 23 chr1 173530287 173530327 -23665105 + RSINE1 SINE B4 120 163 -2 6 1908 378 188 0 0 chr1 173530661 173530730 -23664702 - ID_B1 SINE B4 0 224 156 6 1908 272 37 0 69 chr1 173532460 173532518 -23662914 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 6 1908 875 306 109 57 chr1 173533110 173533432 -23662000 + MLT1B LTR MaLR 3 350 -40 6 1908 951 219 19 28 chr1 173533432 173533648 -23661784 - B3 SINE B2 -2 214 1 6 1908 875 306 109 57 chr1 173533648 173533692 -23661740 + MLT1B LTR MaLR 351 388 -2 6 1908 699 251 33 92 chr1 173533694 173533788 -23661644 + MLT1B-int LTR MaLR 1 83 -1288 6 1908 732 181 53 0 chr1 173533788 173533921 -23661511 - B1_Mur4 SINE Alu -10 140 1 7 1908 699 251 33 92 chr1 173533921 173534098 -23661334 + MLT1B-int LTR MaLR 84 256 -1115 6 1908 219 186 0 0 chr1 173534134 173534177 -23661255 + (CATA)n Simple_repeat Simple_repeat 1 43 0 7 1908 586 275 54 11 chr1 173534229 173534413 -23661019 + MLT1B-int LTR MaLR 256 447 -924 6 1908 717 281 11 5 chr1 173534426 173534612 -23660820 + B3A SINE B2 1 187 -11 7 1908 259 276 132 60 chr1 173534612 173534778 -23660654 + MLT1B-int LTR MaLR 587 764 -607 6 1908 623 316 6 39 chr1 173534871 173535049 -23660383 - RLTR31_Mur LTR ERVK 0 553 382 7 1908 204 158 0 0 chr1 173535605 173535643 -23659789 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 7 1908 258 306 28 0 chr1 173535897 173536005 -23659427 + L1ME2z LINE L1 6263 6373 -71 7 1908 1321 70 26 21 chr1 173536491 173536682 -23658750 + B2_Mm2 SINE B2 2 193 -2 7 1908 816 65 0 0 chr1 173536705 173536812 -23658620 + (GGA)n Simple_repeat Simple_repeat 3 109 0 7 1908 612 0 0 0 chr1 173537077 173537145 -23658287 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1908 297 0 0 0 chr1 173537145 173537177 -23658255 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1908 225 132 0 0 chr1 173537559 173537597 -23657835 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1908 407 299 108 25 chr1 173537750 173537908 -23657524 + MLT1F2 LTR MaLR 15 185 -375 8 1908 279 79 0 0 chr1 173537966 173538004 -23657428 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1908 329 295 104 10 chr1 173538024 173538258 -23657174 - L1MA9 LINE L1 -376 5936 5639 8 1908 431 250 97 28 chr1 173538937 173539081 -23656351 - ERVL-B4-int LTR ERVL -4658 1056 903 8 238 3194 174 55 7 chr1 173539154 173539720 -23655712 - Lx7 LINE L1 -706 6990 6398 8 1909 509 245 134 54 chr1 173539721 173539925 -23655507 + MTD LTR MaLR 148 406 -13 8 1909 335 339 15 0 chr1 173539929 173540030 -23655402 - MLT2B1 LTR ERVL -137 417 311 8 1909 1206 137 86 0 chr1 173540037 173540234 -23655198 + Lx LINE L1 6424 6637 -17 8 1909 264 59 0 0 chr1 173540243 173540277 -23655155 + (GGA)n Simple_repeat Simple_repeat 2 35 0 8 1909 198 0 0 0 chr1 173540274 173540296 -23655136 + (TAGG)n Simple_repeat Simple_repeat 2 23 0 9 1909 268 303 19 39 chr1 173540378 173540481 -23654951 - MLT2B1 LTR ERVL -184 336 236 8 1909 983 138 11 51 chr1 173540666 173540681 -23654751 - ORR1A3-int LTR MaLR -1605 358 350 9 1909 207 0 0 0 chr1 173540681 173540704 -23654728 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1909 983 138 11 51 chr1 173540704 173540863 -23654569 - ORR1A3-int LTR MaLR -1614 349 191 9 1909 660 26 0 0 chr1 173541194 173541272 -23654160 + (TCC)n Simple_repeat Simple_repeat 3 80 0 9 1909 5289 95 35 4 chr1 173541285 173542026 -23653406 - Lx LINE L1 -17 6637 5874 9 1909 489 333 121 64 chr1 173542875 173543394 -23652038 - LTR75 LTR ERVL 0 562 14 9 1909 7100 145 6 18 chr1 173544375 173545569 -23649863 - Lx2B LINE L1 -164 5713 4534 9 1909 7705 138 44 6 chr1 173545567 173546809 -23648623 + Lx2B LINE L1 5709 6998 -2 9 1909 246 32 0 0 chr1 173546847 173546878 -23648554 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1909 671 195 149 51 chr1 173549216 173549411 -23646021 + RMER19B LTR ERVK 274 487 -415 9 1909 412 258 53 153 chr1 173549651 173549971 -23645461 + L1MA7 LINE L1 5998 6285 -6 9 1909 2523 65 26 61 chr1 173550644 173551021 -23644411 - L1Md_F2 LINE L1 -1 6581 6218 1 1909 530 283 218 10 chr1 173551668 173551974 -23643458 + MER57E1 LTR ERV1 3 372 0 1 1909 1289 90 5 33 chr1 173552334 173552518 -23642914 + B2_Mm1t SINE B2 1 179 -14 1 1909 350 73 358 9 chr1 173552585 173552694 -23642738 + B2_Mm2 SINE B2 48 194 -1 1 1909 741 23 0 0 chr1 173552843 173552930 -23642502 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1909 1372 90 0 0 chr1 173553043 173553232 -23642200 + B2_Mm1a SINE B2 2 190 -3 1 1909 519 274 120 54 chr1 173553352 173553668 -23641764 + ORR1E LTR MaLR 3 339 -20 1 1909 286 306 47 20 chr1 173553794 173553944 -23641488 + ERVL-B4-int LTR ERVL 1009 1162 -4552 1 1909 571 305 51 0 chr1 173553948 173554145 -23641287 + ERVL-B4-int LTR ERVL 4259 4465 -1249 1 1909 1251 137 4 103 chr1 173554288 173554541 -23640891 + ORR1A4 LTR MaLR 1 228 -101 1 1909 3133 39 2 38 chr1 173554541 173554941 -23640491 + RLTR10 LTR ERVK 1 386 -4 1 1909 17342 24 0 13 chr1 173554957 173556926 -23638506 + RLTR10-int LTR ERVK 41 1984 -3 1 1909 3110 39 2 42 chr1 173556928 173557334 -23638098 + RLTR10 LTR ERVK 1 390 0 1 1909 702 76 9 0 chr1 173557334 173557439 -23637993 + ORR1A4 LTR MaLR 289 394 0 1 1909 610 327 67 22 chr1 173557494 173557763 -23637669 - MLT1A0 LTR MaLR -60 305 25 1 1909 553 206 199 6 chr1 173557770 173557926 -23637506 + ERVL-B4-int LTR ERVL 4675 4860 -897 1 1909 322 206 13 0 chr1 173557938 173558014 -23637418 - PB1 SINE Alu 0 117 52 1 1909 1024 235 107 9 chr1 173558389 173558707 -23636725 + RLTR18B LTR ERVK 1 349 -163 1 1909 2031 138 141 5 chr1 173558708 173558801 -23636631 - RMER1B Other Other -9 1057 945 1 1909 213 39 0 0 chr1 173558801 173558827 -23636605 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1909 2031 138 141 5 chr1 173558827 173559103 -23636329 - RMER1B Other Other -122 944 639 1 1909 381 93 0 0 chr1 173560047 173560101 -23635331 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1909 230 340 19 37 chr1 173560257 173560419 -23635013 - ID_B1 SINE B4 0 224 66 1 1909 348 127 0 0 chr1 173560548 173560603 -23634829 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 1 1909 1047 98 35 0 chr1 173560611 173560754 -23634678 - B1_Mus1 SINE Alu 0 148 1 1 1909 234 0 0 0 chr1 173560908 173560934 -23634498 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1 1909 281 250 118 11 chr1 173560936 173561029 -23634403 - PB1D10 SINE Alu -14 103 1 1 1909 1082 248 0 0 chr1 173561065 173561271 -23634161 - B3 SINE B2 -7 209 4 1 1909 28 0 0 0 chr1 173561622 173561650 -23633782 + AT_rich Low_complexity Low_complexity 1 28 0 1 1909 504 0 0 0 chr1 173561973 173562029 -23633403 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1909 216 0 0 0 chr1 173562160 173562184 -23633248 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1909 293 316 65 118 chr1 173562814 173563169 -23632263 - ORR1E LTR MaLR -23 336 1 1 1909 2212 288 96 52 chr1 173563169 173564079 -23631353 - MTE-int LTR MaLR -53 1527 577 1 1909 2426 150 25 13 chr1 173564182 173564654 -23630778 + RLTR11A2 LTR ERVK 1 478 -49 1 1909 684 297 42 4 chr1 173564673 173564913 -23630519 - MTE-int LTR MaLR -1139 441 193 1 1909 196 0 27 81 chr1 173564991 173565028 -23630404 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1909 186 250 0 0 chr1 173568283 173568339 -23627093 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1909 1251 250 3 34 chr1 173568348 173568646 -23626786 - B4 SINE B4 -1 291 3 1 1909 216 133 22 22 chr1 173569544 173569590 -23625842 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 1909 432 0 0 0 chr1 173569597 173569645 -23625787 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1909 657 154 0 17 chr1 173569650 173569769 -23625663 - B1_Mur4 SINE Alu -29 121 5 1 1909 405 253 0 0 chr1 173570433 173570520 -23624912 - PB1 SINE Alu -28 99 13 1 1909 294 307 71 9 chr1 173570605 173570716 -23624716 - MIRb SINE MIR -88 180 61 1 1909 594 132 37 28 chr1 173570752 173570861 -23624571 - PB1D9 SINE Alu -10 110 1 1 1909 226 360 46 13 chr1 173570906 173571058 -23624374 - L3 LINE CR1 -7 4482 4326 1 1909 1273 249 195 45 chr1 173572153 173572665 -23622767 - RMER13A LTR ERVK -253 607 19 1 1909 276 338 25 49 chr1 173573568 173573730 -23621702 - MLT1A1 LTR MaLR -4 404 247 1 1909 30 0 0 0 chr1 173574309 173574339 -23621093 + AT_rich Low_complexity Low_complexity 1 30 0 1 1909 959 199 80 15 chr1 173574341 173574540 -23620892 - B3 SINE B2 -4 212 1 1 1909 2295 95 136 11 chr1 173574872 173575246 -23620186 - Lx2B LINE L1 -20 6980 6560 1 1909 288 282 111 16 chr1 173575471 173575597 -23619835 + RMER30 DNA MER1_type 11 148 -54 1 1909 348 24 0 0 chr1 173575920 173575961 -23619471 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1909 458 250 17 35 chr1 173575984 173576100 -23619332 - RSINE1 SINE B4 -36 129 16 1 1909 960 161 194 0 chr1 173576123 173576303 -23619129 - B3 SINE B2 0 216 2 1 1909 563 183 0 6 chr1 173578247 173578428 -23617004 + GA-rich Low_complexity Low_complexity 1 180 0 1 1909 207 341 21 36 chr1 173579390 173579530 -23615902 - MIRb SINE MIR -11 257 120 1 1909 457 231 176 57 chr1 173579562 173579755 -23615677 + B3 SINE B2 1 216 0 1 1909 300 291 54 7 chr1 173579763 173579912 -23615520 + L1M5 LINE L1 5158 5313 -833 1 1909 691 220 0 0 chr1 173579921 173580053 -23615379 + B1_Mur1 SINE Alu 11 142 -7 1 1909 234 0 0 0 chr1 173580829 173580855 -23614577 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1909 208 121 0 0 chr1 173582015 173582048 -23613384 + (TGG)n Simple_repeat Simple_repeat 1 33 0 1 1909 4153 245 107 16 chr1 173582086 173583174 -23612258 + Lx8 LINE L1 6142 7328 -145 1 1909 243 0 0 0 chr1 173583174 173583201 -23612231 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1909 704 46 37 0 chr1 173583395 173583504 -23611928 + (TC)n Simple_repeat Simple_repeat 1 113 0 1 1909 1438 62 0 6 chr1 173584262 173584441 -23610991 + B2_Mm2 SINE B2 1 178 -17 1 1909 454 16 16 16 chr1 173584441 173584505 -23610927 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1909 367 375 34 23 chr1 173584729 173584991 -23610441 + L2 LINE L2 2365 2629 -790 1 1909 207 0 0 0 chr1 173586512 173586535 -23608897 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1909 483 18 0 0 chr1 173586535 173586591 -23608841 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1909 233 389 103 7 chr1 173586728 173586873 -23608559 - MTEa LTR MaLR -218 161 3 1 1909 233 304 0 12 chr1 173586875 173586955 -23608477 + MIR SINE MIR 69 147 -115 1 1909 805 271 14 5 chr1 173587092 173587300 -23608132 - B3 SINE B2 -6 210 1 1 1909 213 39 0 0 chr1 173587545 173587571 -23607861 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1909 23 54 0 0 chr1 173587927 173587964 -23607468 + AT_rich Low_complexity Low_complexity 1 37 0 1 1909 758 149 89 22 chr1 173587964 173588143 -23607289 - Lx5 LINE L1 -45 7005 6815 1 1909 724 194 0 0 chr1 173589314 173589458 -23605974 - Lx6 LINE L1 -10 7450 7307 1 1909 1844 116 58 0 chr1 173589462 173589790 -23605642 - RLTR15 LTR ERVK -4 355 9 1 1909 2173 219 25 94 chr1 173589791 173590279 -23605153 - Lx6 LINE L1 -1083 6377 5923 1 1909 1240 48 0 0 chr1 173590279 173590426 -23605006 - B1_Mm SINE Alu 0 147 1 1 1909 2173 219 25 94 chr1 173590426 173590535 -23604897 - Lx6 LINE L1 -1538 5922 5821 1 1909 542 352 70 84 chr1 173590723 173591296 -23604136 - MER77 LTR ERVL -2 605 41 1 1909 320 301 11 11 chr1 173591298 173591392 -23604040 + CT-rich Low_complexity Low_complexity 4 97 0 1 1909 640 303 123 9 chr1 173591524 173591850 -23603582 - MLT1A0 LTR MaLR 0 365 3 1 1909 2453 141 47 8 chr1 173592040 173592441 -23602991 - MTC LTR MaLR -4 417 1 1 1909 3105 92 15 26 chr1 173592731 173593189 -23602243 + RLTR11B LTR ERVK 1 453 0 1 1909 243 61 0 0 chr1 173593318 173593351 -23602081 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1909 244 232 21 104 chr1 173593367 173593463 -23601969 - 4.5SRNA scRNA scRNA 0 94 7 1 1909 326 288 0 0 chr1 173593516 173593589 -23601843 + MER20 DNA MER1_type 10 82 -137 1 1909 321 260 14 0 chr1 173593613 173593686 -23601746 - B4A SINE B4 -214 78 5 1 1909 306 0 0 0 chr1 173593815 173593849 -23601583 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1909 832 270 45 28 chr1 173594870 173595224 -23600208 + Lx9 LINE L1 7285 7644 0 1 1909 2182 185 9 24 chr1 173595376 173595802 -23599630 - Lx LINE L1 -1 6653 6234 1 1909 1163 122 22 0 chr1 173595819 173595999 -23599433 + Lx3B LINE L1 6268 6451 -522 1 1909 1327 193 32 16 chr1 173595999 173596309 -23599123 - MYSERV-int LTR ERVK -921 5629 5315 1 1909 337 137 26 181 chr1 173596312 173596336 -23599096 - RMER4A LTR ERVK -39 546 529 1 1909 4238 186 45 76 chr1 173596336 173597267 -23598165 - RMER19B LTR ERVK 0 902 1 1 1909 680 186 17 139 chr1 173597267 173597473 -23597959 - RMER4A LTR ERVK -57 528 238 1 1909 1236 204 60 8 chr1 173597520 173597857 -23597575 - RMER19A LTR ERVK 0 902 474 1 1909 3000 103 33 5 chr1 173597865 173598295 -23597137 - L1_Mus4 LINE L1 -5 6631 6190 1 1909 4848 78 11 19 chr1 173598295 173598531 -23596901 + L1_Mus3 LINE L1 5516 5752 -131 1 1909 1469 50 55 0 chr1 173598531 173598713 -23596719 + B2_Mm1a SINE B2 2 193 0 1 1909 4848 60 14 16 chr1 173598713 173599173 -23596259 + L1_Mus3 LINE L1 5753 6211 -427 1 1909 1799 190 26 17 chr1 173599173 173599521 -23595911 - RMER19A LTR ERVK -384 353 3 1 1909 603 68 0 0 chr1 173599569 173599642 -23595790 + tRNA-Arg-CGY_ tRNA tRNA 1 73 -3 1 1909 1158 29 0 0 chr1 173599664 173599800 -23595632 + B1_Mus2 SINE Alu 1 136 -11 1 1909 639 0 0 0 chr1 173599800 173599871 -23595561 + (CAAAA)n Simple_repeat Simple_repeat 3 73 0 1 1909 3627 237 89 60 chr1 173599872 173601076 -23594356 - MYSERV-int LTR ERVK -1537 5013 3775 1 1909 8614 42 1 0 chr1 173601133 173602723 -23592709 - L1Md_F2 LINE L1 0 6582 4993 1 1909 23 54 0 0 chr1 173602934 173602971 -23592461 + AT_rich Low_complexity Low_complexity 1 37 0 1 1909 600 240 34 43 chr1 173603826 173604035 -23591397 - RLTR12B LTR ERVK -313 215 9 1 1909 483 264 147 61 chr1 173605058 173605256 -23590176 - ID_B1 SINE B4 -8 216 2 1 1909 1454 195 132 144 chr1 173605380 173605920 -23589512 + MT2A LTR ERVL 1 533 0 1 1909 232 279 49 147 chr1 173606341 173606484 -23588948 - RLTR24 LTR ERV1 -82 447 319 1 1909 232 310 0 0 chr1 173606631 173606702 -23588730 - RLTR24 LTR ERV1 -452 77 7 1 1909 756 52 0 0 chr1 173606730 173606827 -23588605 + (TTC)n Simple_repeat Simple_repeat 2 98 0 2 1909 1119 149 78 17 chr1 173606868 173607275 -23588157 + RLTR13D6 LTR ERVK 341 856 -46 2 1909 577 117 0 21 chr1 173607304 173607400 -23588032 + B1_Mur3 SINE Alu 55 148 -1 2 1909 1756 147 74 6 chr1 173607925 173608261 -23587171 + ORR1B2 LTR MaLR 1 359 -8 2 1909 1942 130 9 3 chr1 173608998 173609315 -23586117 - ORR1B1 LTR MaLR 0 394 76 2 1909 449 211 0 0 chr1 173610147 173610242 -23585190 - ORR1B1 LTR MaLR -299 95 1 2 1909 248 128 43 0 chr1 173610865 173610912 -23584520 - B1_Mur4 SINE Alu -95 55 7 2 1909 827 231 28 46 chr1 173610944 173611162 -23584270 - B3 SINE B2 0 216 3 2 1909 8702 47 12 1 chr1 173612613 173614395 -23581037 - L1Md_F2 LINE L1 0 6582 4789 2 1909 285 299 0 0 chr1 173614509 173614586 -23580846 - RLTR11B LTR ERVK -92 361 285 2 1909 241 259 70 53 chr1 173614594 173614708 -23580724 - RLTR11B LTR ERVK -127 326 211 2 1909 904 139 28 7 chr1 173614790 173614935 -23580497 - B1_Mur3 SINE Alu 0 149 2 2 1909 276 288 94 51 chr1 173615462 173615579 -23579853 - MLT1G3 LTR MaLR -368 227 106 2 1909 624 252 8 0 chr1 173615590 173615717 -23579715 - ID_B1 SINE B4 -5 219 92 2 1909 560 241 120 0 chr1 173615779 173615912 -23579520 + B1_Mur1 SINE Alu 1 149 0 2 1909 193 329 44 69 chr1 173615951 173616111 -23579321 + L2 LINE L2 2473 2628 -791 2 1909 800 262 106 23 chr1 173616413 173616754 -23578678 + MT2B LTR ERVL 90 601 0 2 1909 306 147 0 0 chr1 173617208 173617276 -23578156 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1909 383 302 35 8 chr1 173617276 173617398 -23578034 - PB1D10 SINE Alu -20 128 10 2 1909 333 0 0 0 chr1 173617896 173617933 -23577499 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1909 1153 77 14 0 chr1 173617933 173618076 -23577356 - B1_Mm SINE Alu 0 147 3 2 1909 4584 55 3 40 chr1 173618123 173618706 -23576726 - L1_Mus2 LINE L1 0 6566 6005 2 1909 358 263 63 63 chr1 173618706 173618832 -23576600 + MER20 DNA MER1_type 49 174 -45 2 1909 519 333 0 0 chr1 173618975 173619113 -23576319 + ID_B1 SINE B4 86 223 -1 2 1909 314 232 106 35 chr1 173619445 173619530 -23575902 - B1_Mm SINE Alu -54 93 3 2 1909 4380 66 19 5 chr1 173619530 173620090 -23575342 - ORR1A1-int LTR MaLR -1223 569 1 2 1909 2857 61 6 23 chr1 173620090 173620442 -23574990 - ORR1A1 LTR MaLR 0 346 1 2 1909 11916 195 90 29 chr1 173620815 173621464 -23573968 - L1_Mur3 LINE L1 -1405 4472 3815 2 1909 785 0 0 31 chr1 173621464 173621562 -23573870 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 2 1909 11916 189 88 25 chr1 173621562 173624841 -23570591 - L1_Mur3 LINE L1 -2063 3814 298 2 1909 306 266 0 122 chr1 173625092 173625105 -23570327 - PB1D10 SINE Alu -3 114 21 2 1909 382 239 21 64 chr1 173625105 173625199 -23570233 - ID_B1 SINE B4 -33 191 102 2 1909 675 155 0 0 chr1 173625409 173625564 -23569868 + GA-rich Low_complexity Low_complexity 1 155 0 2 1909 274 174 120 65 chr1 173627031 173627123 -23568309 + L1MA4A LINE L1 5871 5967 -333 2 1909 312 250 186 8 chr1 173627186 173627315 -23568117 + L1MA4A LINE L1 6123 6274 -29 2 1909 567 0 0 0 chr1 173627471 173627534 -23567898 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1909 4397 95 25 7 chr1 173628604 173629205 -23566227 + L1_Mus4 LINE L1 6024 6635 -1 2 1909 2223 151 45 48 chr1 173630347 173630659 -23564773 + RMER4A LTR ERVK 50 345 -121 2 1909 792 0 0 0 chr1 173630659 173630747 -23564685 + (TC)n Simple_repeat Simple_repeat 1 88 0 2 1909 2223 151 45 48 chr1 173630747 173630852 -23564580 + RMER4A LTR ERVK 346 465 -1 2 1909 1156 301 14 20 chr1 173630882 173631177 -23564255 - MTEa LTR MaLR -86 293 1 2 1909 214 316 132 0 chr1 173631210 173631346 -23564086 + MIRb SINE MIR 104 257 -11 2 1909 402 235 143 0 chr1 173631667 173631765 -23563667 + PB1D10 SINE Alu 8 119 -8 2 1909 271 233 229 55 chr1 173631681 173631790 -23563642 + B4A SINE B4 111 238 -54 2 1909 1361 152 4 34 chr1 173631952 173632078 -23563354 + Lx7 LINE L1 6961 7084 -612 2 1909 2476 110 0 3 chr1 173632078 173632405 -23563027 - ORR1A3 LTR MaLR 0 326 1 2 1909 1361 152 4 34 chr1 173632405 173632517 -23562915 + Lx7 LINE L1 7085 7192 -504 2 1909 1245 90 6 11 chr1 173632521 173632701 -23562731 - B2_Mm2 SINE B2 -2 193 15 2 1909 997 199 65 62 chr1 173632706 173632839 -23562593 + Lx7 LINE L1 7203 7333 -363 2 1909 318 26 0 0 chr1 173632839 173632878 -23562554 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1909 997 231 45 43 chr1 173632878 173633150 -23562282 + Lx7 LINE L1 7334 7677 -19 2 1909 1745 197 62 35 chr1 173633260 173633390 -23562042 + ORR1C1 LTR MaLR 1 120 -258 2 1909 207 0 0 0 chr1 173633390 173633413 -23562019 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 2 1909 1745 197 62 35 chr1 173633413 173633650 -23561782 + ORR1C1 LTR MaLR 121 377 -1 2 1909 1191 272 10 32 chr1 173635356 173635387 -23560045 - Lx6 LINE L1 -9 7451 7426 2 1909 2485 96 16 0 chr1 173635387 173635709 -23559723 + ORR1A2 LTR MaLR 1 327 0 2 1909 1191 272 10 32 chr1 173635709 173635985 -23559447 - Lx6 LINE L1 -35 7425 7152 2 1909 1610 124 22 133 chr1 173635987 173636349 -23559083 + RLTRETN_Mm LTR ERVK 1 322 0 2 1909 317 146 36 0 chr1 173636423 173636478 -23558954 - L1_Mur3 LINE L1 -6 5874 5818 2 1909 26 0 0 0 chr1 173636478 173636504 -23558928 + AT_rich Low_complexity Low_complexity 1 26 0 2 1909 5625 188 49 149 chr1 173636523 173638594 -23556838 - L1_Mur3 LINE L1 -53 5827 3963 2 1909 2258 169 53 49 chr1 173638598 173638989 -23556443 + RLTR16 LTR ERVK 6 413 -92 2 1909 432 0 0 0 chr1 173638989 173639037 -23556395 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1909 2258 169 53 49 chr1 173639037 173639131 -23556301 + RLTR16 LTR ERVK 414 493 -12 2 1909 3134 154 64 3 chr1 173639189 173639768 -23555664 - L1_Mur3 LINE L1 -1911 3969 3356 2 1909 4207 242 53 23 chr1 173639769 173641201 -23554231 + Lx6 LINE L1 5250 6731 -729 2 1909 764 205 60 30 chr1 173641679 173641845 -23553587 + Lx6 LINE L1 6723 6893 -567 2 1909 2309 178 70 2 chr1 173641880 173642156 -23553276 - L1_Mur3 LINE L1 -4142 1738 1444 2 1909 4004 104 217 16 chr1 173642156 173642770 -23552662 + RMER19A LTR ERVK 1 737 0 2 1909 2309 187 80 26 chr1 173642770 173643334 -23552098 - L1_Mur3 LINE L1 -4437 1443 842 2 1909 903 267 66 51 chr1 173643335 173643670 -23551762 + RLTR28B LTR ERVL 103 442 -39 2 1909 807 282 97 0 chr1 173644367 173644707 -23550725 - MER45B DNA Tip100 -10 1030 658 2 1909 355 372 71 24 chr1 173644896 173644966 -23550466 - MER45B DNA Tip100 -837 203 122 2 1909 522 0 0 0 chr1 173644966 173645024 -23550408 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1909 355 372 71 24 chr1 173645024 173645121 -23550311 - MER45B DNA Tip100 -919 121 28 2 1909 13092 64 20 17 chr1 173645213 173647011 -23548421 - RLTR22_Mus LTR ERVK -4 1804 1 2 1909 529 287 28 14 chr1 173647012 173647157 -23548275 + MTD LTR MaLR 26 172 -247 2 1909 35877 70 9 1 chr1 173647158 173652503 -23542929 - L1Md_F2 LINE L1 -12 6570 1185 2 1909 261 0 0 0 chr1 173652503 173652532 -23542900 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1909 3888 134 46 14 chr1 173652532 173653137 -23542295 - L1Md_F2 LINE L1 -5432 1184 558 2 1909 2310 155 68 12 chr1 173653137 173653549 -23541883 + RLTR10C LTR ERVK 1 435 -1 2 1909 623 106 32 0 chr1 173653549 173653643 -23541789 + MMERVK10C-int LTR ERVK 3 99 -7482 2 1909 240 255 0 0 chr1 173653643 173653690 -23541742 + RLTR27 LTR ERVK 227 273 -36 2 1909 5163 123 1 0 chr1 173653698 173654428 -23541004 + MMERVK10C-int LTR ERVK 222 952 -6629 2 1909 1958 195 140 31 chr1 173654565 173655078 -23540354 + RMER16-int LTR ERVK 251 819 -4587 2 1909 21073 84 2 5 chr1 173655769 173658800 -23536632 + MMERVK10C-int LTR ERVK 4623 7670 -10 2 1909 2339 148 65 17 chr1 173658809 173659222 -23536210 + RLTR10C LTR ERVK 1 433 -3 2 1909 2189 133 0 3 chr1 173659222 173659575 -23535857 - L1Md_F LINE L1 -6053 466 115 2 1909 532 255 159 25 chr1 173659577 173659778 -23535654 + MTD LTR MaLR 158 385 -34 2 1909 646 192 14 78 chr1 173660982 173661123 -23534309 - B3 SINE B2 -10 206 75 2 1909 399 289 0 0 chr1 173661279 173661362 -23534070 + ID4 SINE ID 1 83 0 2 1909 290 200 15 15 chr1 173661579 173661642 -23533790 - MER5A1 DNA MER1_type 0 166 104 2 1909 1475 243 71 8 chr1 173661642 173662007 -23533425 - RLTR18B LTR ERVK -2 510 123 2 1909 266 246 0 28 chr1 173662015 173662086 -23533346 - RLTR18B LTR ERVK -322 190 122 2 1909 418 74 0 0 chr1 173662190 173662244 -23533188 - U6 snRNA snRNA -52 55 2 2 1909 540 0 0 0 chr1 173662407 173662467 -23532965 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1909 692 85 81 7 chr1 173662519 173662634 -23532798 - ORR1A4 LTR MaLR 0 394 220 2 1909 5290 50 2 31 chr1 173662786 173663430 -23532002 - L1_Mus2 LINE L1 -6 6560 5936 2 1909 947 48 0 0 chr1 173663431 173663535 -23531897 - U6 snRNA snRNA -2 105 2 2 1909 1097 183 4 119 chr1 173663536 173663797 -23531635 - ORR1A4 LTR MaLR -98 231 1 2 1909 3284 147 25 6 chr1 173664034 173664548 -23530884 - RLTR28 LTR ERVL 0 524 1 2 1909 11199 100 3 6 chr1 173665352 173665762 -23529670 + L1_Mus1 LINE L1 4326 4731 -1152 2 1909 318 26 0 0 chr1 173665762 173665801 -23529631 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1909 11199 88 2 7 chr1 173665801 173667240 -23528192 + L1_Mus1 LINE L1 4732 6170 -397 2 1909 656 69 0 65 chr1 173667240 173667348 -23528084 + L1_Mus1 LINE L1 6466 6566 -1 2 1909 212 130 22 0 chr1 173667388 173667434 -23527998 + A-rich Low_complexity Low_complexity 5 51 0 2 1909 302 61 45 15 chr1 173667849 173667916 -23527516 + (TTTTG)n Simple_repeat Simple_repeat 3 71 0 2 1909 1206 54 0 0 chr1 173667916 173668063 -23527369 - B1_Mus2 SINE Alu 0 147 1 2 1909 2909 116 11 4 chr1 173668081 173668557 -23526875 + RLTR28 LTR ERVL 40 518 -6 2 1909 392 300 22 56 chr1 173668576 173668756 -23526676 - MTEa LTR MaLR -2 377 204 2 1909 389 282 97 42 chr1 173668804 173669264 -23526168 + RLTR15 LTR ERVK 1 508 -20 2 1909 1644 185 89 0 chr1 173669266 173669590 -23525842 - RMER15 LTR ERVL -9 566 214 2 1909 252 59 0 0 chr1 173669610 173669644 -23525788 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1909 510 70 0 0 chr1 173669806 173669877 -23525555 + B1_Mus2 SINE Alu 77 147 0 2 1909 1096 60 8 0 chr1 173669913 173670047 -23525385 + B1_Mus1 SINE Alu 1 135 -13 2 1909 327 25 0 0 chr1 173670047 173670087 -23525345 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1909 1708 158 82 61 chr1 173670105 173670157 -23525275 - ORR1B1 LTR MaLR -8 386 349 2 1909 210 37 0 0 chr1 173670157 173670184 -23525248 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 238 1708 158 82 61 chr1 173670184 173670509 -23524923 - ORR1B1 LTR MaLR -46 348 1 2 1910 304 219 0 0 chr1 173670560 173670624 -23524808 - B1F SINE Alu -2 147 84 2 1910 250 198 47 87 chr1 173670632 173670759 -23524673 + Lx9 LINE L1 7435 7556 -88 2 1910 1776 156 102 59 chr1 173670774 173671197 -23524235 + RMER10A LTR ERVL 1 441 -1 2 1910 699 46 0 0 chr1 173671229 173671316 -23524116 + (TTCCC)n Simple_repeat Simple_repeat 4 90 0 2 1910 387 0 0 0 chr1 173671674 173671717 -23523715 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1910 360 270 20 70 chr1 173671812 173672061 -23523371 - MER65-int LTR ERV1 -2828 2043 1871 2 1910 802 57 0 74 chr1 173672514 173672704 -23522728 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 2 1910 3421 33 2 2 chr1 173674344 173674740 -23520692 - MTA_Mm LTR MaLR 0 396 1 2 1910 1186 68 0 0 chr1 173675069 173675216 -23520216 - B1_Mus1 SINE Alu 0 148 2 2 1910 1486 261 8 58 chr1 173675227 173675626 -23519806 + MTEa LTR MaLR 1 379 0 3 1910 241 240 10 10 chr1 173675632 173675729 -23519703 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1910 491 101 13 0 chr1 173675735 173675814 -23519618 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1910 505 286 16 16 chr1 173675934 173676062 -23519370 - ID_B1 SINE B4 -10 214 87 3 1910 824 230 153 8 chr1 173676938 173677192 -23518240 - RMER21B LTR ERV1 -277 565 275 3 1910 264 252 124 57 chr1 173677237 173677342 -23518090 - MTEa LTR MaLR -267 112 1 3 1910 191 300 0 0 chr1 173677938 173677988 -23517444 - MIR SINE MIR -101 107 58 3 1910 239 367 11 11 chr1 173678224 173678315 -23517117 + MIR SINE MIR 5 95 -167 3 1910 206 200 44 0 chr1 173678884 173678929 -23516503 + GA-rich Low_complexity Low_complexity 2 48 0 3 1910 188 363 80 40 chr1 173678947 173679122 -23516310 + MIR3 SINE MIR 26 207 -1 3 1910 216 181 11 67 chr1 173679762 173679851 -23515581 + CT-rich Low_complexity Low_complexity 2 85 0 3 1910 286 240 75 19 chr1 173679911 173680017 -23515415 + RMER10A LTR ERVL 318 429 -13 3 1910 192 77 0 0 chr1 173680571 173680597 -23514835 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1910 398 279 68 128 chr1 173680758 173681197 -23514235 - RMER10A LTR ERVL -18 424 12 3 1910 266 347 11 0 chr1 173682300 173682395 -23513037 + MIRb SINE MIR 64 159 -109 3 1910 2605 115 26 8 chr1 173682555 173682941 -23512491 - ORR1B1 LTR MaLR -1 393 1 3 1910 223 154 39 0 chr1 173683253 173683305 -23512127 + T-rich Low_complexity Low_complexity 3 56 0 3 1910 616 200 48 0 chr1 173683328 173683453 -23511979 - B1F2 SINE Alu -9 140 10 3 1910 710 262 96 29 chr1 173683648 173683856 -23511576 - ID_B1 SINE B4 -1 223 2 3 1910 250 232 78 44 chr1 173683984 173684074 -23511358 - RMER10A LTR ERVL -29 413 321 3 1910 5410 102 44 38 chr1 173684077 173684522 -23510910 - RMER17A2 LTR ERVK 0 906 446 3 1910 816 11 0 0 chr1 173684522 173684615 -23510817 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1910 5410 102 44 38 chr1 173684615 173685069 -23510363 - RMER17A2 LTR ERVK -461 445 1 3 1910 209 300 0 48 chr1 173685789 173685852 -23509580 + C-rich Low_complexity Low_complexity 3 62 0 3 1910 263 85 21 0 chr1 173685884 173685931 -23509501 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1910 2564 150 35 11 chr1 173686131 173686595 -23508837 + RLTR20B3 LTR ERVK 1 475 -102 3 1910 11152 79 1 9 chr1 173686595 173688823 -23506609 + L1_Mus1 LINE L1 4360 6567 0 3 1910 764 130 0 58 chr1 173688824 173688963 -23506469 + RLTR19-int LTR ERVK 760 890 -5247 3 1910 609 14 0 0 chr1 173689041 173689111 -23506321 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1910 375 225 44 11 chr1 173689111 173689201 -23506231 + RLTR20B3 LTR ERVK 485 577 0 3 1910 2743 143 13 52 chr1 173689491 173690028 -23505404 - RMER20A LTR ERVK 0 516 1 3 1910 450 240 0 0 chr1 173690696 173690846 -23504586 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 3 1910 250 220 57 48 chr1 173690851 173690956 -23504476 - MLT2B1 LTR ERVL -35 532 427 3 1910 3295 129 47 32 chr1 173690966 173691834 -23503598 - RMER17B LTR ERVK -12 894 1 3 1910 327 315 11 0 chr1 173693151 173693240 -23502192 + B4A SINE B4 1 90 -202 3 1910 196 216 39 0 chr1 173693809 173693860 -23501572 + MIRc SINE MIR 162 214 -54 3 1910 1330 150 47 8 chr1 173694016 173694252 -23501180 - ORR1B2 LTR MaLR -8 359 115 3 1910 4969 152 79 13 chr1 173694304 173694943 -23500489 - ORR1B2-int LTR MaLR -3 1506 829 3 1910 372 22 0 0 chr1 173694943 173694988 -23500444 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1910 4969 152 79 13 chr1 173694988 173695390 -23500042 - ORR1B2-int LTR MaLR -681 828 397 3 1910 344 249 92 7 chr1 173695394 173695524 -23499908 + Lx7 LINE L1 6938 7084 -389 3 1910 300 377 18 0 chr1 173695515 173695629 -23499803 + Lx7 LINE L1 7236 7351 -122 3 1910 848 158 72 0 chr1 173695862 173696001 -23499431 + B1_Mur1 SINE Alu 1 149 0 3 1910 636 106 0 0 chr1 173696043 173696137 -23499295 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 3 1910 240 310 118 52 chr1 173696137 173696273 -23499159 - MER63B DNA AcHobo -38 398 254 3 1910 563 333 0 7 chr1 173696417 173696553 -23498879 + RSINE1 SINE B4 2 136 -29 3 1910 233 189 0 0 chr1 173696523 173696560 -23498872 + B4 SINE B4 252 288 -4 3 1910 186 43 0 0 chr1 173697300 173697323 -23498109 + (AGCTG)n Simple_repeat Simple_repeat 2 24 0 3 1910 200 269 149 0 chr1 173699167 173699234 -23496198 - MIR SINE MIR -38 224 148 3 1910 941 153 189 0 chr1 173700066 173700256 -23495176 + URR1A DNA MER1_type 1 226 0 3 1910 1381 109 5 0 chr1 173700695 173700887 -23494545 - B2_Mm1a SINE B2 0 193 1 3 1910 322 175 25 0 chr1 173700925 173701005 -23494427 + GA-rich Low_complexity Low_complexity 2 83 0 3 1910 219 69 0 0 chr1 173701599 173701628 -23493804 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1910 181 220 20 20 chr1 173702596 173702647 -23492785 - L2a LINE L2 -8 3418 3368 3 1910 286 338 220 13 chr1 173703094 173703693 -23491739 - L2 LINE L2 -665 2754 2032 3 1910 594 0 0 0 chr1 173703887 173703953 -23491479 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1910 181 186 47 78 chr1 173704595 173704659 -23490773 + MIRc SINE MIR 55 116 -152 3 1910 24 0 0 29 chr1 173705517 173705540 -23489892 + AT_rich Low_complexity Low_complexity 1 23 0 3 1910 210 37 0 0 chr1 173705540 173705567 -23489865 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1910 24 0 0 29 chr1 173705567 173705578 -23489854 + AT_rich Low_complexity Low_complexity 1 11 0 3 1910 270 335 31 27 chr1 173706374 173706512 -23488920 + MIRb SINE MIR 19 160 -108 3 1910 246 229 0 0 chr1 173706755 173706825 -23488607 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1910 293 250 0 38 chr1 173708105 173708184 -23487248 - MIRb SINE MIR -84 184 109 3 1910 2757 106 5 12 chr1 173709126 173709554 -23485878 - RMER17D LTR ERVK -2 887 463 3 1910 762 93 0 0 chr1 173709555 173709663 -23485769 + (GA)n Simple_repeat Simple_repeat 2 109 0 3 1910 2264 128 8 5 chr1 173709665 173710034 -23485398 + RMER17D LTR ERVK 518 887 -2 3 1910 252 189 40 0 chr1 173710392 173710466 -23484966 + (TATG)n Simple_repeat Simple_repeat 2 78 0 3 1910 802 249 158 6 chr1 173710715 173711026 -23484406 - MLT1B LTR MaLR -4 386 29 3 1910 1132 148 113 5 chr1 173711306 173711509 -23483923 - URR1B DNA MER1_type 0 225 1 3 1910 290 140 35 0 chr1 173713245 173713302 -23482130 + GA-rich Low_complexity Low_complexity 3 61 0 3 1910 735 12 0 0 chr1 173713413 173713497 -23481935 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 1910 680 170 18 24 chr1 173714161 173714330 -23481102 + GA-rich Low_complexity Low_complexity 2 169 0 3 1910 943 115 6 6 chr1 173714335 173714493 -23480939 + (GGAA)n Simple_repeat Simple_repeat 1 158 0 3 1910 211 321 86 21 chr1 173715004 173715144 -23480288 - MIR SINE MIR -46 216 68 3 1910 226 322 100 0 chr1 173716493 173716583 -23478849 - PB1D10 SINE Alu -18 99 1 3 1910 181 314 43 0 chr1 173717177 173717247 -23478185 + MIR SINE MIR 123 195 -67 3 1910 378 319 0 8 chr1 173719454 173719574 -23475858 + PB1 SINE Alu 5 123 -4 3 1910 818 137 8 0 chr1 173719924 173720055 -23475377 + B1_Mur4 SINE Alu 19 150 0 3 1910 532 183 0 16 chr1 173720580 173720763 -23474669 + CT-rich Low_complexity Low_complexity 1 180 0 3 1910 348 24 0 0 chr1 173720780 173720821 -23474611 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1910 316 206 14 14 chr1 173721976 173722050 -23473382 + B1_Mus1 SINE Alu 24 97 -51 3 1910 261 242 0 29 chr1 173722054 173722122 -23473310 + GA-rich Low_complexity Low_complexity 3 68 0 3 1910 252 369 1 20 chr1 173722134 173722262 -23473170 - MIR SINE MIR -3 259 138 3 1910 261 340 53 11 chr1 173722259 173722354 -23473078 + MamGypLTR1a LTR Gypsy 291 389 -395 3 1910 1801 21 0 0 chr1 173723344 173723537 -23471895 + B2_Mm1t SINE B2 1 193 0 3 1910 484 289 194 30 chr1 173723713 173724263 -23471169 - L1ME3A LINE L1 -392 6052 5404 3 1910 1122 317 166 14 chr1 173724408 173725441 -23469991 - L1ME3A LINE L1 -971 5175 3986 3 1910 643 241 65 7 chr1 173725456 173725594 -23469838 + B3A SINE B2 9 154 -44 3 1910 522 46 0 0 chr1 173725631 173725696 -23469736 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1910 439 221 24 54 chr1 173725725 173725852 -23469580 + ID_B1 SINE B4 95 215 -9 3 1910 244 294 86 16 chr1 173725882 173726010 -23469422 + ID4_ SINE ID 1 137 -15 3 1910 306 277 24 0 chr1 173726256 173726339 -23469093 - L1ME3A LINE L1 -2427 3719 3635 3 1910 599 298 106 53 chr1 173726350 173726690 -23468742 - MLT1C LTR MaLR 0 467 110 3 1910 299 254 25 42 chr1 173726816 173726935 -23468497 - L1ME3A LINE L1 -2541 3605 3489 3 1910 285 209 86 17 chr1 173726920 173727037 -23468395 - L1ME3A LINE L1 -4195 2047 1923 3 1910 25 75 0 0 chr1 173727091 173727144 -23468288 + AT_rich Low_complexity Low_complexity 1 53 0 3 1910 739 190 48 21 chr1 173727312 173727457 -23467975 + B1_Mur1 SINE Alu 1 149 0 3 1910 21 36 0 0 chr1 173728433 173728461 -23466971 + AT_rich Low_complexity Low_complexity 1 28 0 3 1910 382 213 41 31 chr1 173728843 173728940 -23466492 + MLT2B3 LTR ERVL 2 99 -455 3 1910 274 299 9 78 chr1 173728940 173728959 -23466473 + MTEa LTR MaLR 2 109 -270 3 1910 318 207 105 94 chr1 173729197 173729394 -23466038 - MTEa LTR MaLR -13 366 164 3 1910 489 284 270 17 chr1 173730873 173731106 -23464326 + B4A SINE B4 1 292 0 3 1910 340 372 85 120 chr1 173731274 173731398 -23464034 - MLT1N2 LTR MaLR -7 555 441 3 1910 1391 221 187 60 chr1 173731398 173731927 -23463505 - MT2B LTR ERVL -4 597 2 3 1910 340 372 85 120 chr1 173731927 173732377 -23463055 - MLT1N2 LTR MaLR -122 440 1 3 1910 1246 253 80 32 chr1 173732407 173732808 -23462624 - Lx8 LINE L1 -6 7467 7048 3 1910 314 258 79 79 chr1 173733496 173733597 -23461835 - PB1D10 SINE Alu -1 116 16 3 1910 251 184 0 39 chr1 173734208 173734259 -23461173 - MT2B LTR ERVL -3 581 533 3 1910 237 196 0 0 chr1 173734290 173734341 -23461091 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1910 1019 231 276 35 chr1 173734342 173734632 -23460800 - MT2B LTR ERVL -61 540 236 3 1910 270 0 0 0 chr1 173734632 173734662 -23460770 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1910 1019 231 276 35 chr1 173734662 173734806 -23460626 - MT2B LTR ERVL -366 235 2 3 1910 296 233 41 49 chr1 173734832 173734954 -23460478 - ORR1A3-int LTR MaLR -1297 666 546 4 1910 230 232 118 69 chr1 173734955 173735057 -23460375 - ORR1A3-int LTR MaLR -1346 617 511 4 1910 10603 156 50 23 chr1 173735057 173736897 -23458535 - MERVL_2A-int LTR ERVL -186 5575 3685 4 1910 5509 147 58 39 chr1 173736890 173737920 -23457512 - MERVL_2A-int LTR ERVL -4223 1538 489 4 1910 431 280 100 29 chr1 173737920 173738249 -23457183 - MT2A LTR ERVL -199 385 1 4 1910 812 158 7 0 chr1 173738300 173738452 -23456980 + GA-rich Low_complexity Low_complexity 4 156 0 4 1910 33274 85 7 10 chr1 173738475 173743838 -23451594 + L1Md_F2 LINE L1 244 5586 -297 4 1910 7816 62 28 6 chr1 173743839 173744800 -23450632 + L1Md_F2 LINE L1 5588 6569 -13 4 1910 303 209 9 18 chr1 173744804 173744916 -23450516 + GA-rich Low_complexity Low_complexity 2 112 0 4 1910 896 143 6 0 chr1 173744924 173745092 -23450340 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 4 1910 629 215 0 6 chr1 173745056 173745120 -23450312 + polypurine Low_complexity Low_complexity 1 64 0 4 1910 1142 67 11 11 chr1 173745120 173745300 -23450132 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1910 629 215 0 6 chr1 173745300 173745413 -23450019 + polypurine Low_complexity Low_complexity 65 176 0 4 1910 229 250 0 20 chr1 173745436 173745451 -23449981 + polypurine Low_complexity Low_complexity 2 16 0 4 1910 1076 114 0 6 chr1 173745451 173745628 -23449804 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 4 1910 229 250 0 20 chr1 173745628 173745714 -23449718 + GA-rich Low_complexity Low_complexity 17 100 0 4 1910 258 232 125 68 chr1 173746046 173746134 -23449298 - MER20 DNA MER1_type -49 170 78 4 1910 414 0 0 0 chr1 173746349 173746395 -23449037 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1910 520 264 88 30 chr1 173746709 173747104 -23448328 - RLTR12B LTR ERVK -68 291 5 4 1910 2896 172 164 18 chr1 173747594 173748056 -23447376 + RMER1B Other Other 374 918 -148 4 1910 207 0 0 0 chr1 173748056 173748079 -23447353 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1910 2896 172 164 18 chr1 173748079 173748213 -23447219 + RMER1B Other Other 919 1056 -10 4 1910 288 0 0 0 chr1 173748674 173748706 -23446726 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1910 386 271 35 0 chr1 173748707 173748792 -23446640 - PB1D10 SINE Alu -29 88 1 4 1910 848 248 67 52 chr1 173748818 173749086 -23446346 + B4A SINE B4 6 277 -15 4 1910 345 176 0 0 chr1 173749160 173749234 -23446198 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1910 1381 158 18 0 chr1 173749628 173749850 -23445582 - URR1A DNA MER1_type 0 226 1 4 1910 257 241 17 0 chr1 173750611 173750669 -23444763 - L3 LINE CR1 -280 4209 4151 4 1910 404 286 181 62 chr1 173750942 173751192 -23444240 + ORR1E LTR MaLR 75 375 -4 4 1910 1665 276 114 62 chr1 173751197 173751989 -23443443 + ORR1E-int LTR MaLR 1 934 -646 4 1910 1140 55 20 0 chr1 173751990 173752136 -23443296 + B2_Mm2 SINE B2 5 153 -42 4 1910 289 0 24 24 chr1 173752136 173752178 -23443254 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1910 1296 48 0 7 chr1 173752194 173752342 -23443090 + B1_Mm SINE Alu 1 147 0 4 1910 1753 273 86 50 chr1 173752350 173752932 -23442500 + ORR1E-int LTR MaLR 924 1527 -53 4 1910 742 321 43 53 chr1 173752932 173753254 -23442178 + ORR1E LTR MaLR 1 319 -40 4 1910 636 308 63 78 chr1 173753972 173754307 -23441125 - ORR1E LTR MaLR -6 353 24 4 1910 309 266 177 15 chr1 173755822 173755952 -23439480 - Lx8 LINE L1 -361 7112 6962 4 1910 521 199 7 19 chr1 173756030 173756184 -23439248 + (TA)n Simple_repeat Simple_repeat 1 152 0 4 1910 724 335 62 14 chr1 173756193 173756562 -23438870 - L1MEg2 LINE L1 -5486 966 580 4 1910 227 232 143 14 chr1 173756814 173756884 -23438548 - ID4 SINE ID -3 80 2 4 1910 231 293 77 39 chr1 173757668 173757824 -23437608 + BLACKJACK DNA AcHobo 2131 2292 -652 4 1910 335 283 74 19 chr1 173757886 173757994 -23437438 + MLT1A0 LTR MaLR 2 115 -250 4 1910 639 253 130 31 chr1 173758032 173758224 -23437208 + B3 SINE B2 1 211 -5 4 1910 396 0 0 0 chr1 173758234 173758278 -23437154 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1910 347 325 89 44 chr1 173758521 173758837 -23436595 + BLACKJACK DNA AcHobo 2349 2678 -266 4 1910 258 254 63 0 chr1 173758930 173758993 -23436439 + B4A SINE B4 5 71 -221 4 1910 694 292 86 8 chr1 173759095 173759350 -23436082 + RMER15-int LTR ERVL 1262 1536 -3463 4 1910 1957 128 50 199 chr1 173759841 173760399 -23435033 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1910 336 116 15 19 chr1 173760400 173760476 -23434956 + IAPEz-int LTR ERVK 3 83 -6398 4 1910 264 133 0 0 chr1 173760494 173760539 -23434893 + IAPEz-int LTR ERVK 11 55 -1932 4 1910 435 128 114 105 chr1 173760539 173760644 -23434788 + IAPEz-int LTR ERVK 18 123 -6358 4 1910 231 267 0 0 chr1 173760644 173760689 -23434743 + RLTR27 LTR ERVK 231 275 -34 4 1910 4247 72 5 26 chr1 173760692 173761273 -23434159 + IAPEz-int LTR ERVK 94 662 -5819 4 1910 2268 65 0 0 chr1 173761273 173761551 -23433881 + IAPEz-int LTR ERVK 1359 1636 -4845 4 1910 5990 53 5 13 chr1 173761550 173762302 -23433130 + IAPEz-int LTR ERVK 5736 6481 0 4 1910 1923 124 52 205 chr1 173762306 173762862 -23432570 + IAPLTR2_Mm LTR ERVK 5 475 0 4 1910 584 248 15 0 chr1 173762862 173762995 -23432437 + RMER15-int LTR ERVL 4147 4281 -718 4 1910 2511 172 37 2 chr1 173762996 173763403 -23432029 - MTC LTR MaLR 0 421 1 4 1910 3053 159 19 72 chr1 173763403 173763539 -23431893 - MTC-int LTR MaLR 0 1258 1128 4 1910 931 202 169 57 chr1 173763539 173763907 -23431525 + RLTR9E LTR ERVK 1 409 0 4 1910 3053 170 23 90 chr1 173763907 173764564 -23430868 - MTC-int LTR MaLR -131 1127 397 4 1910 393 22 0 0 chr1 173764572 173764618 -23430814 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1910 576 77 0 37 chr1 173764620 173764701 -23430731 - B2_Mm2 SINE B2 -41 154 77 4 1910 1467 293 65 48 chr1 173764704 173765529 -23429903 - L1_Mur3 LINE L1 -396 5484 4646 4 1910 920 207 21 193 chr1 173765532 173765699 -23429733 - Lx8 LINE L1 -2 7471 7344 4 1910 4677 18 0 0 chr1 173765699 173766189 -23429243 - MT2_Mm LTR ERVL 0 493 4 4 1910 411 68 0 0 chr1 173766189 173766248 -23429184 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1910 180 0 0 0 chr1 173766248 173766267 -23429165 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1910 920 207 21 193 chr1 173766267 173766486 -23428946 - Lx8 LINE L1 -130 7343 7152 4 1910 872 240 0 19 chr1 173766489 173766701 -23428731 - L1M3 LINE L1 -1431 4709 4502 4 1910 6167 73 14 6 chr1 173766703 173767542 -23427890 + Lx3_Mus LINE L1 5882 6727 -282 4 1910 550 117 9 46 chr1 173767542 173767650 -23427782 + Lx3_Mus LINE L1 6905 7008 -1 4 1910 437 311 82 33 chr1 173767710 173768061 -23427371 - L1_Mur3 LINE L1 -4163 1717 1348 4 1910 3422 53 0 34 chr1 173768061 173768471 -23426961 - MTA_Mm LTR MaLR 0 396 1 4 1910 437 311 82 33 chr1 173768471 173768572 -23426860 - L1_Mur3 LINE L1 -4533 1347 1243 4 1910 891 211 119 0 chr1 173768796 173768981 -23426451 - B3 SINE B2 -4 212 6 4 1910 404 143 10 0 chr1 173769005 173769103 -23426329 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1910 305 276 131 7 chr1 173769117 173769270 -23426162 - L1_Mur3 LINE L1 -4247 1633 1462 4 1910 694 151 6 6 chr1 173769371 173769544 -23425888 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1910 389 308 104 60 chr1 173770349 173770618 -23424814 + L2c LINE L2 3107 3387 0 4 1910 256 108 0 0 chr1 173771222 173771259 -23424173 + L2a LINE L2 3378 3414 -12 4 1910 818 212 31 10 chr1 173771352 173771547 -23423885 - Lx6 LINE L1 0 7460 7262 4 1910 10215 169 51 12 chr1 173771542 173772813 -23422619 - L1_Mur3 LINE L1 -46 5834 4523 4 1910 237 33 0 0 chr1 173772813 173772843 -23422589 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1910 10215 169 51 12 chr1 173772843 173773559 -23421873 - L1_Mur3 LINE L1 -1358 4522 3770 4 1910 710 150 0 103 chr1 173773544 173773700 -23421732 - L1_Mur3 LINE L1 -3666 2214 2075 4 1910 282 29 0 0 chr1 173773713 173773748 -23421684 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 1910 478 240 76 46 chr1 173773801 173773932 -23421500 + B1F2 SINE Alu 7 141 -8 4 1910 272 333 24 65 chr1 173774699 173774869 -23420563 - MIR SINE MIR -3 259 97 4 1910 198 0 0 0 chr1 173774962 173774984 -23420448 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1910 493 261 170 82 chr1 173775558 173775729 -23419703 - B4A SINE B4 -104 188 3 4 1910 700 358 64 18 chr1 173777963 173778293 -23417139 - MLT1J LTR MaLR -166 346 2 4 1910 495 0 0 0 chr1 173778817 173778872 -23416560 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1910 357 24 0 0 chr1 173778874 173778916 -23416516 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1910 325 305 66 33 chr1 173780114 173780236 -23415196 - MER45A DNA Tip100 -2 176 51 4 1910 215 300 100 0 chr1 173781385 173781465 -23413967 + L2a LINE L2 3338 3425 -1 4 1910 1072 127 0 0 chr1 173781624 173781766 -23413666 + B1_Mur4 SINE Alu 1 142 -8 4 1910 362 295 16 32 chr1 173782656 173782782 -23412650 + Lx6 LINE L1 575 698 -7030 4 1910 803 172 0 8 chr1 173782782 173782911 -23412521 + B1_Mur3 SINE Alu 13 140 -9 4 1910 459 0 0 0 chr1 173783384 173783435 -23411997 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1910 3302 230 45 33 chr1 173783464 173784354 -23411078 - Lx6 LINE L1 -6617 1111 211 4 1910 7385 171 28 12 chr1 173784351 173785847 -23409585 + Lx6 LINE L1 1137 2656 -3224 4 1910 2049 220 58 10 chr1 173785847 173786330 -23409102 - RMER20A LTR ERVK 0 516 11 4 1910 4687 154 25 38 chr1 173786334 173787289 -23408143 + Lx6 LINE L1 2650 3592 -2288 4 1910 3016 6 3 0 chr1 173787289 173787610 -23407822 - RLTRETN_Mm LTR ERVK 0 322 1 4 1910 11110 18 6 9 chr1 173787610 173788872 -23406560 - MMETn-int LTR ERVK 0 4844 3586 4 1910 7966 5 0 0 chr1 173788872 173789741 -23405691 - L1Md_A LINE L1 -147 5736 4868 4 1910 8299 2 0 0 chr1 173789741 173790602 -23404830 + L1Md_A LINE L1 5722 6582 0 4 1910 32068 15 1 3 chr1 173790605 173794209 -23401223 - MMETn-int LTR ERVK -1249 3595 1 4 1910 2982 12 3 0 chr1 173794209 173794530 -23400902 - RLTRETN_Mm LTR ERVK 0 322 1 4 1910 1605 130 54 0 chr1 173794530 173794787 -23400645 + Lx6 LINE L1 3587 3858 -2022 4 1910 342 0 0 0 chr1 173794787 173794825 -23400607 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1910 1605 130 54 0 chr1 173794825 173794843 -23400589 + Lx6 LINE L1 3859 3876 -2004 4 1910 23 68 0 0 chr1 173797450 173797494 -23397938 + AT_rich Low_complexity Low_complexity 1 44 0 4 1910 381 310 9 0 chr1 173797575 173797691 -23397741 + MERVK26-int LTR ERVK 5023 5139 -1780 4 1910 3618 206 70 47 chr1 173798910 173800777 -23394655 + Lx6 LINE L1 4498 6221 -1239 4 1910 3035 178 35 7 chr1 173800777 173801355 -23394077 - MERVL_2A-int LTR ERVL -5167 594 1 4 1910 348 167 0 159 chr1 173801355 173801462 -23393970 - MT2B2 LTR ERVL 0 584 495 4 238 1088 179 22 30 chr1 173801470 173801701 -23393731 - ORR1C2 LTR MaLR -155 229 1 4 1911 345 308 39 39 chr1 173801737 173801840 -23393592 - PB1D10 SINE Alu -37 111 8 4 1911 651 298 36 28 chr1 173801826 173802078 -23393354 - MER63C DNA AcHobo -345 585 332 4 1911 267 132 0 36 chr1 173802158 173802213 -23393219 + Lx6 LINE L1 7408 7460 0 4 1911 463 146 85 78 chr1 173802219 173802234 -23393198 + Lx9 LINE L1 7503 7515 -129 4 1911 423 0 0 0 chr1 173802234 173802281 -23393151 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1911 463 146 85 78 chr1 173802281 173802406 -23393026 + Lx9 LINE L1 7516 7644 0 4 1911 546 16 0 0 chr1 173802551 173802614 -23392818 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1911 198 0 0 0 chr1 173802614 173802636 -23392796 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1911 241 283 142 0 chr1 173802679 173802799 -23392633 - MER63C DNA AcHobo -788 142 6 4 1911 25 31 0 0 chr1 173803714 173803746 -23391686 + AT_rich Low_complexity Low_complexity 1 32 0 4 1911 1723 27 5 0 chr1 173803835 173804023 -23391409 - B2_Mm1t SINE B2 -4 189 1 4 1911 536 256 57 59 chr1 173804281 173804484 -23390948 - B3A SINE B2 -3 192 2 4 1911 405 0 0 0 chr1 173804543 173804588 -23390844 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1911 411 159 0 36 chr1 173805017 173805128 -23390304 + (TATG)n Simple_repeat Simple_repeat 2 108 0 4 1911 320 75 0 0 chr1 173805129 173805169 -23390263 - HAL1-3A_ME LINE L1 -846 2012 1973 4 1911 182 139 47 0 chr1 173805184 173805227 -23390205 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 4 1911 3265 23 0 0 chr1 173805473 173805819 -23389613 + ORR1A0 LTR MaLR 1 346 0 4 1911 34784 78 10 1 chr1 173805819 173811090 -23384342 + MERVL_2A-int LTR ERVL 1 5441 -320 4 1911 355 123 26 52 chr1 173811120 173811197 -23384235 + ORR1A3-int LTR MaLR 566 640 -1323 4 1911 322 0 0 0 chr1 173811197 173811235 -23384197 + MERVL_2A-int LTR ERVL 5448 5485 0 4 1911 3700 28 139 0 chr1 173811235 173811668 -23383764 + MT2_Mm LTR ERVL 1 493 0 4 1911 228 150 0 0 chr1 173813316 173813356 -23382076 - MTEa LTR MaLR 0 379 340 5 1911 198 287 143 27 chr1 173813388 173813535 -23381897 + MIRb SINE MIR 98 261 -7 5 1911 1162 79 7 0 chr1 173813924 173814064 -23381368 + B1_Mus1 SINE Alu 1 141 -7 5 1911 255 340 40 40 chr1 173814197 173814298 -23381134 + L2a LINE L2 3322 3422 -4 5 1911 199 375 39 0 chr1 173814603 173814707 -23380725 + MIR3 SINE MIR 100 207 -1 5 1911 1306 41 0 0 chr1 173816151 173816297 -23379135 + B1_Mm SINE Alu 1 146 -1 5 1911 363 78 0 0 chr1 173816299 173816350 -23379082 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1911 300 385 48 24 chr1 173816918 173817083 -23378349 - MER91A DNA Tip100 -5 191 23 5 1911 280 278 115 129 chr1 173817754 173818118 -23377314 + RMER10A LTR ERVL 12 370 -72 5 1911 3050 94 27 88 chr1 173818121 173818634 -23376798 - RLTR45 LTR ERVK 0 482 1 5 1911 7744 48 7 0 chr1 173818634 173819540 -23375892 - RLTR45-int LTR ERVK 0 7244 6333 5 1911 2777 102 8 8 chr1 173819540 173819937 -23375495 - RLTR13B1 LTR ERVK -385 508 112 5 1911 7472 35 6 8 chr1 173819937 173820818 -23374614 - RLTR45-int LTR ERVK -1302 5942 5064 5 1911 4468 73 7 24 chr1 173820810 173821428 -23374004 - RLTR45-int LTR ERVK -3258 3986 3380 5 1911 16087 23 6 9 chr1 173821398 173823295 -23372137 - RLTR45-int LTR ERVK -4032 3212 1322 5 1911 2285 39 0 7 chr1 173823711 173823997 -23371435 - RLTR10B LTR ERVK 0 292 9 5 1911 326 24 0 0 chr1 173824005 173824047 -23371385 - RLTR10B LTR ERVK -250 42 1 5 1911 1131 24 0 0 chr1 173824380 173824507 -23370925 - RLTR45-int LTR ERVK -6426 818 692 5 1911 4151 50 86 0 chr1 173824690 173825327 -23370105 - RLTR45-int LTR ERVK -6552 692 1 5 1911 2999 112 21 80 chr1 173825327 173825839 -23369593 - RLTR45 LTR ERVK 0 482 1 5 1911 226 164 35 35 chr1 173825844 173825901 -23369531 + RMER10A LTR ERVL 373 429 -13 5 1911 842 90 8 0 chr1 173826333 173826467 -23368965 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1911 1782 171 86 34 chr1 173827020 173827478 -23367954 - RLTR20A LTR ERVK 0 541 1 5 1911 547 284 0 29 chr1 173827806 173827944 -23367488 + ID_B1 SINE B4 79 212 -12 5 1911 222 122 21 53 chr1 173827947 173827958 -23367474 + T-rich Low_complexity Low_complexity 85 95 0 5 1911 278 0 54 0 chr1 173827958 173827995 -23367437 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1911 222 122 21 53 chr1 173827995 173828046 -23367386 + T-rich Low_complexity Low_complexity 37 84 0 5 1911 1144 63 14 0 chr1 173828046 173828189 -23367243 - B1_Mm SINE Alu -2 145 1 5 1911 222 122 21 53 chr1 173828189 173828220 -23367212 + T-rich Low_complexity Low_complexity 5 36 0 5 1911 1432 193 60 65 chr1 173828394 173828776 -23366656 - RMER10B LTR ERVL -1 397 18 5 1911 441 0 0 0 chr1 173828855 173828904 -23366528 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 5 1911 2190 133 19 27 chr1 173829887 173830258 -23365174 + RLTR9A LTR ERVK 1 368 0 5 1911 288 258 89 89 chr1 173830275 173830577 -23364855 + ETnERV-int LTR ERVK 19 320 -2994 5 1911 774 0 0 0 chr1 173830577 173830663 -23364769 + (TAAAA)n Simple_repeat Simple_repeat 4 89 0 5 1911 270 0 0 0 chr1 173830722 173830752 -23364680 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1911 5661 120 54 60 chr1 173830752 173831790 -23363642 + RLTR45-int LTR ERVK 2092 3123 -4121 5 1911 4048 115 53 27 chr1 173831844 173832507 -23362925 + RMER16-int LTR ERVK 2864 3543 -1863 5 1911 3918 60 61 6 chr1 173832509 173833032 -23362400 + LTRIS2 LTR ERV1 5 556 -8 5 1911 2027 62 0 23 chr1 173833032 173833331 -23362101 - RLTR4_Mm LTR ERV1 0 742 451 5 1911 1488 111 45 11 chr1 173833308 173833573 -23361859 - RLTR4_Mm LTR ERV1 -468 274 1 5 1911 3677 128 53 22 chr1 173833590 173834189 -23361243 + RMER16-int LTR ERVK 3559 4176 -1230 5 1911 303 224 165 48 chr1 173834197 173834300 -23361132 + ETnERV2-int LTR ERVK 6097 6211 -1195 5 1911 356 279 166 24 chr1 173834387 173834556 -23360876 + ETnERV2-int LTR ERVK 6233 6425 -981 5 1911 330 206 27 14 chr1 173834734 173834808 -23360624 + ETnERV2-int LTR ERVK 7331 7405 -1 5 1911 1638 144 79 37 chr1 173834809 173835162 -23360270 + RLTR9A LTR ERVK 1 368 0 5 1911 2662 150 87 2 chr1 173835784 173836217 -23359215 + RLTR20D LTR ERVK 1 465 -103 5 1911 477 0 0 0 chr1 173836217 173836270 -23359162 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1911 2662 150 87 2 chr1 173836270 173836329 -23359103 + RLTR20D LTR ERVK 466 534 -34 5 1911 1673 142 4 4 chr1 173836337 173836613 -23358819 - L1_Mur2 LINE L1 -1448 4429 4154 5 1911 3329 158 10 2 chr1 173836597 173837191 -23358241 + L1_Mur2 LINE L1 4735 5333 -544 5 1911 935 270 68 62 chr1 173837191 173837673 -23357759 + RMER17A2 LTR ERVK 5 489 -417 5 1911 1353 227 36 62 chr1 173837692 173838215 -23357217 + RMER13B LTR ERVK 272 904 -4 5 1911 3585 97 16 10 chr1 173838222 173838928 -23356504 + Lx LINE L1 5341 6056 -598 5 1911 528 271 51 0 chr1 173838928 173839046 -23356386 + ETnERV2-int LTR ERVK 7079 7202 -204 5 1911 3806 129 39 14 chr1 173839418 173840038 -23355394 + Lx LINE L1 6020 6654 0 5 1911 425 256 111 8 chr1 173840406 173840532 -23354900 - RSINE1 SINE B4 -22 143 5 5 1911 1962 132 134 159 chr1 173840579 173840960 -23354472 + RMER4A LTR ERVK 1 369 -97 5 1911 495 0 0 0 chr1 173840960 173841015 -23354417 + (TTCTC)n Simple_repeat Simple_repeat 5 59 0 5 1911 1962 132 134 159 chr1 173841015 173841111 -23354321 + RMER4A LTR ERVK 370 465 -1 5 1911 324 0 0 0 chr1 173841239 173841275 -23354157 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1911 4312 156 61 73 chr1 173841370 173842271 -23353161 - RMER19B LTR ERVK -12 890 1 5 1911 434 304 43 37 chr1 173842276 173842440 -23352992 - RMER15 LTR ERVL -150 425 261 5 1911 1725 308 101 34 chr1 173842604 173843320 -23352112 - Lx8 LINE L1 -439 7034 6271 5 1911 354 247 591 20 chr1 173843419 173843569 -23351863 - RMER15-int LTR ERVL -2612 2387 2154 5 1911 1585 43 0 0 chr1 173843569 173843755 -23351677 - B2_Mm1t SINE B2 -6 187 2 5 1911 354 320 97 44 chr1 173843755 173843891 -23351541 - RMER15-int LTR ERVL -2846 2153 2009 5 1911 354 374 41 32 chr1 173844007 173844253 -23351179 - RMER15-int LTR ERVL -3148 1851 1604 5 1911 648 36 0 0 chr1 173844303 173844386 -23351046 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1911 1189 29 14 0 chr1 173844388 173844528 -23350904 - B1_Mus1 SINE Alu -6 142 1 5 1911 183 114 0 0 chr1 173844550 173844585 -23350847 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 1911 364 211 95 0 chr1 173844626 173844721 -23350711 - RSINE1 SINE B4 -59 106 3 5 1911 2779 305 75 79 chr1 173844805 173845175 -23350257 - RMER15-int LTR ERVL -3616 1383 1061 5 1911 522 0 0 0 chr1 173845175 173845233 -23350199 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1911 2779 305 75 79 chr1 173845233 173846249 -23349183 - RMER15-int LTR ERVL -3939 1060 3 5 1911 371 293 101 22 chr1 173846266 173846444 -23348988 - RMER15 LTR ERVL -20 555 364 5 1911 3064 236 158 46 chr1 173846732 173847074 -23348358 - Lx5 LINE L1 -36 7014 6735 5 1911 329 0 24 0 chr1 173847074 173847115 -23348317 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1911 3064 240 35 64 chr1 173847115 173847395 -23348037 - Lx5 LINE L1 -316 6734 6464 5 1911 318 26 0 0 chr1 173847395 173847434 -23347998 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 5 1911 3064 240 35 64 chr1 173847434 173847715 -23347717 - Lx5 LINE L1 -587 6463 6216 5 1911 210 337 168 5 chr1 173848837 173849034 -23346398 - L2b LINE L2 0 3426 3198 5 1911 828 254 52 22 chr1 173849992 173850262 -23345170 - B4A SINE B4 -13 279 2 5 1911 233 316 49 92 chr1 173850316 173850501 -23344931 + Lx8 LINE L1 7060 7236 -237 5 1911 294 351 11 0 chr1 173850502 173850596 -23344836 + RMER15 LTR ERVL 375 469 -106 5 1911 501 62 0 0 chr1 173850596 173850661 -23344771 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 1911 609 14 0 0 chr1 173850661 173850731 -23344701 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 5 1911 311 331 115 0 chr1 173851093 173851223 -23344209 - MER5A1 DNA MER1_type -21 145 1 5 1911 247 140 70 0 chr1 173851912 173851969 -23343463 + tRNA-Ala-GCY_ tRNA tRNA 1 61 -14 5 1911 242 216 258 23 chr1 173851999 173852127 -23343305 - L1MB5 LINE L1 -164 6010 5853 5 1911 255 287 8 25 chr1 173852170 173852288 -23343144 - L1MB5 LINE L1 -985 5161 5046 5 1911 341 175 0 0 chr1 173852297 173852354 -23343078 - ID4 SINE ID -25 58 2 5 1911 419 208 25 100 chr1 173852356 173852434 -23342998 - L1MB5 LINE L1 -1090 5056 4980 5 1911 777 199 7 14 chr1 173852434 173852582 -23342850 - B1_Mur1 SINE Alu 0 149 3 5 1911 419 208 25 100 chr1 173852582 173852663 -23342769 - L1MB5 LINE L1 -1167 4979 4909 5 1911 25 31 0 0 chr1 173852668 173852700 -23342732 + AT_rich Low_complexity Low_complexity 1 32 0 5 1911 1482 272 83 44 chr1 173852866 173853640 -23341792 - Lx7 LINE L1 -1782 5914 5080 5 1911 703 158 4 32 chr1 173853728 173853976 -23341456 + CT-rich Low_complexity Low_complexity 1 241 0 5 1911 3105 258 110 10 chr1 173854047 173854927 -23340505 - Lx8 LINE L1 -244 7229 6262 5 1911 957 254 61 37 chr1 173855011 173855306 -23340126 - Lx8 LINE L1 -341 7132 6831 5 1911 309 230 9 56 chr1 173855315 173855445 -23339987 - L1MB5 LINE L1 -1721 4419 4297 5 1911 3034 35 0 0 chr1 173855458 173855804 -23339628 - ORR1A0 LTR MaLR 0 346 1 5 1911 14754 48 0 1 chr1 173855804 173857598 -23337834 - ORR1A0-int LTR MaLR 0 1792 1 5 1911 3059 29 0 0 chr1 173857598 173857944 -23337488 - ORR1A0 LTR MaLR 0 346 1 5 1911 858 150 30 0 chr1 173857949 173858082 -23337350 - B1_Mur3 SINE Alu -11 138 2 5 1911 1478 284 56 32 chr1 173858145 173858399 -23337033 - L1MB5 LINE L1 -1848 4298 4043 5 1911 2578 146 39 10 chr1 173858399 173858808 -23336624 - MTC LTR MaLR 0 421 1 5 1911 1478 284 56 32 chr1 173858808 173859109 -23336323 - L1MB5 LINE L1 -2104 4042 3730 5 1911 261 252 42 59 chr1 173859129 173859247 -23336185 - URR1B DNA MER1_type 0 225 110 5 1911 308 222 28 0 chr1 173860011 173860083 -23335349 - PB1D10 SINE Alu -2 115 42 5 1911 273 276 69 0 chr1 173860958 173861045 -23334387 - L2c LINE L2 -269 3118 3026 5 1911 295 236 28 0 chr1 173861619 173861691 -23333741 + PB1D10 SINE Alu 42 115 -2 5 1911 197 349 39 79 chr1 173861947 173862227 -23333205 - L2a LINE L2 -94 3332 3064 5 1911 194 351 36 29 chr1 173862240 173862378 -23333054 - L2a LINE L2 -411 3008 2870 5 1911 446 244 114 62 chr1 173862400 173862610 -23332822 - L1ME3A LINE L1 -38 6135 5915 5 1911 216 0 0 0 chr1 173863237 173863261 -23332171 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1911 201 158 0 0 chr1 173863305 173863343 -23332089 + A-rich Low_complexity Low_complexity 1 38 0 5 1911 938 230 5 20 chr1 173863354 173863558 -23331874 + B3 SINE B2 1 201 -15 5 1911 450 304 75 6 chr1 173863567 173863726 -23331706 + MIRc SINE MIR 47 216 -52 5 1911 223 353 47 0 chr1 173864687 173864772 -23330660 - MIR SINE MIR -85 123 35 5 1911 416 248 19 29 chr1 173865184 173865288 -23330144 + PB1D10 SINE Alu 6 108 -9 5 1911 799 222 26 0 chr1 173865462 173865615 -23329817 + RSINE1 SINE B4 4 160 -5 5 1911 522 0 0 0 chr1 173865628 173865686 -23329746 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1911 198 0 0 0 chr1 173865698 173865720 -23329712 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1911 582 252 14 22 chr1 173865746 173865884 -23329548 + B1_Mur2 SINE Alu 1 137 -12 5 1911 459 0 0 0 chr1 173865884 173865935 -23329497 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1911 321 317 0 9 chr1 173866089 173866194 -23329238 - L2a LINE L2 -251 3175 3072 5 1911 450 198 12 0 chr1 173866362 173866448 -23328984 + B4A SINE B4 192 278 -14 5 1911 4620 82 122 72 chr1 173866867 173867714 -23327718 - RMER17D LTR ERVK 0 889 1 5 1911 264 345 50 8 chr1 173869051 173869171 -23326261 + MIRm SINE MIR 24 148 -128 5 1911 1226 92 33 0 chr1 173870191 173870375 -23325057 - L1_Mus3 LINE L1 0 6638 6449 5 1911 1602 190 104 6 chr1 173870727 173871055 -23324377 - Lx5 LINE L1 -3 7047 6688 5 1911 1216 69 11 6 chr1 173871457 173871633 -23323799 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 5 1911 243 0 0 0 chr1 173871724 173871751 -23323681 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1911 558 264 128 27 chr1 173871889 173872161 -23323271 - B4A SINE B4 0 292 3 6 1911 595 157 34 17 chr1 173872298 173872415 -23323017 + RSINE1 SINE B4 2 120 -45 6 1911 240 59 0 0 chr1 173872431 173872465 -23322967 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1911 180 77 0 0 chr1 173872465 173872491 -23322941 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1911 193 371 97 28 chr1 173873701 173873989 -23321443 + L2c LINE L2 3080 3387 0 6 1911 526 256 60 0 chr1 173874340 173874457 -23320975 + ID_B1 SINE B4 98 221 -3 6 1911 327 266 25 0 chr1 173874542 173874621 -23320811 + B1F SINE Alu 62 142 -7 6 1911 1294 106 27 0 chr1 173874632 173874820 -23320612 + B2_Mm2 SINE B2 3 195 0 6 1911 226 178 9 36 chr1 173875138 173875204 -23320228 + T-rich Low_complexity Low_complexity 1 64 0 6 1911 306 278 144 0 chr1 173875495 173875592 -23319840 - ID_B1 SINE B4 -9 215 105 6 1911 227 212 14 83 chr1 173875546 173875618 -23319814 + YREP_Mm Unknown Unknown 250 316 -1496 6 1911 1676 107 7 26 chr1 173875859 173876128 -23319304 - MTC LTR MaLR -8 413 150 6 1911 2578 166 6 58 chr1 173876136 173876673 -23318759 + RLTR20B1 LTR ERVK 1 509 -54 6 1911 602 188 86 0 chr1 173876993 173877121 -23318311 - MTC LTR MaLR -282 139 1 6 1911 491 239 17 25 chr1 173877121 173877239 -23318193 - RSINE1 SINE B4 -47 118 2 6 1911 432 0 0 0 chr1 173877263 173877311 -23318121 + (TAA)n Simple_repeat Simple_repeat 1 48 0 6 1911 302 333 101 57 chr1 173877671 173878056 -23317376 + L2 LINE L2 2125 2526 -893 6 1911 216 200 0 0 chr1 173878434 173878489 -23316943 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1911 218 329 0 14 chr1 173878878 173878952 -23316480 + MER5B DNA MER1_type 75 147 -31 6 1911 824 180 14 0 chr1 173879952 173880091 -23315341 - B1_Mur2 SINE Alu -7 142 2 6 1911 243 333 0 0 chr1 173880482 173880581 -23314851 + CT-rich Low_complexity Low_complexity 2 100 0 6 1911 409 360 0 23 chr1 173880830 173880958 -23314474 + ID_B1 SINE B4 77 201 -23 6 1911 4422 116 18 141 chr1 173880955 173881899 -23313533 + ORR1A4-int LTR MaLR 1136 1963 0 6 1911 1816 121 20 93 chr1 173881899 173882254 -23313178 + ORR1A4 LTR MaLR 1 329 0 6 1911 237 167 0 0 chr1 173882627 173882669 -23312763 - ID2 SINE ID -39 44 3 6 1911 1132 281 55 19 chr1 173882710 173883076 -23312356 + MTEa LTR MaLR 1 379 0 6 1911 333 229 14 0 chr1 173883443 173883513 -23311919 - PB1D10 SINE Alu -12 105 35 6 1911 379 340 71 66 chr1 173883695 173883906 -23311526 + B4A SINE B4 3 214 -78 6 1911 549 0 0 0 chr1 173883910 173883971 -23311461 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1911 584 273 70 39 chr1 173883972 173884045 -23311387 - B3A SINE B2 -32 166 99 6 1911 1710 114 133 14 chr1 173884045 173884339 -23311093 - ORR1A4 LTR MaLR 0 329 1 6 1911 584 273 70 39 chr1 173884339 173884421 -23311011 - B3A SINE B2 -100 98 6 6 1911 213 229 16 16 chr1 173884477 173884539 -23310893 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1911 216 0 0 0 chr1 173884931 173884955 -23310477 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1911 280 211 138 50 chr1 173885071 173885151 -23310281 + PB1D7 SINE Alu 21 107 -13 6 1911 476 253 63 6 chr1 173885712 173885871 -23309561 - RLTR12B LTR ERVK -244 284 117 6 1911 1166 148 11 59 chr1 173886268 173886541 -23308891 + RMER10B LTR ERVL 1 260 -138 6 1911 899 186 29 29 chr1 173886543 173886573 -23308859 + RMER10B LTR ERVL 189 218 -180 6 1911 441 0 0 0 chr1 173886573 173886622 -23308810 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1911 899 186 29 29 chr1 173886622 173886801 -23308631 + RMER10B LTR ERVL 219 397 -1 6 1911 289 304 134 63 chr1 173886801 173887366 -23308066 + L2a LINE L2 2517 3118 -308 6 1911 423 236 56 9 chr1 173887960 173888067 -23307365 + B3A SINE B2 51 162 -36 6 1911 658 102 17 0 chr1 173888071 173888189 -23307243 + (TC)n Simple_repeat Simple_repeat 1 120 0 6 1911 809 267 0 6 chr1 173888237 173888399 -23307033 + RSINE1 SINE B4 4 164 -1 6 1911 226 270 135 0 chr1 173888696 173888770 -23306662 - L2 LINE L2 -1866 1553 1470 6 1911 628 255 36 60 chr1 173888822 173888989 -23306443 + RSINE1 SINE B4 3 165 0 6 1911 294 106 0 0 chr1 173888990 173889037 -23306395 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1911 3046 74 10 31 chr1 173891001 173891417 -23304015 - MTB_Mm LTR MaLR 0 407 1 6 1911 594 317 70 43 chr1 173891445 173891745 -23303687 - MLT1K LTR MaLR -67 528 221 6 1911 228 287 0 122 chr1 173891898 173892005 -23303427 + L1MEd LINE L1 421 514 -5605 6 1911 504 279 0 0 chr1 173892388 173892499 -23302933 + PB1D10 SINE Alu 2 112 -5 6 1911 198 103 0 0 chr1 173892505 173892534 -23302898 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 6 1911 280 45 29 57 chr1 173892745 173892815 -23302617 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 6 1911 494 250 93 0 chr1 173893090 173893198 -23302234 + RSINE1 SINE B4 7 124 -41 6 1911 435 38 0 0 chr1 173893198 173893251 -23302181 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1911 27 0 0 0 chr1 173893253 173893280 -23302152 + AT_rich Low_complexity Low_complexity 1 27 0 6 1911 296 339 63 84 chr1 173893444 173893586 -23301846 + B1F1 SINE Alu 1 139 -10 6 1911 486 188 0 0 chr1 173893586 173893682 -23301750 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1911 411 21 0 0 chr1 173893682 173893730 -23301702 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1911 478 289 0 0 chr1 173894744 173894848 -23300584 + RSINE1 SINE B4 1 104 -61 6 1911 313 346 128 44 chr1 173894948 173895199 -23300233 - LTR85c LTR Gypsy? -13 810 539 6 1911 545 284 97 49 chr1 173895304 173895489 -23299943 + B4A SINE B4 27 220 -72 6 1911 26 64 0 0 chr1 173895570 173895617 -23299815 + AT_rich Low_complexity Low_complexity 1 47 0 6 1911 237 310 11 0 chr1 173896565 173896652 -23298780 + CT-rich Low_complexity Low_complexity 3 90 0 6 1911 393 222 91 18 chr1 173896734 173896844 -23298588 - PB1D9 SINE Alu -1 119 2 6 1911 1178 183 14 42 chr1 173896975 173897192 -23298240 + B3 SINE B2 6 216 0 6 1911 361 111 14 27 chr1 173897192 173897266 -23298166 + GA-rich Low_complexity Low_complexity 1 73 0 6 1911 232 247 0 80 chr1 173897586 173897674 -23297758 + MIR SINE MIR 182 262 0 6 1911 296 314 0 0 chr1 173897932 173898002 -23297430 + MIRb SINE MIR 25 94 -174 6 1911 849 32 48 8 chr1 173898002 173898128 -23297304 + (TCTCCC)n Simple_repeat Simple_repeat 3 133 0 6 1911 1363 63 0 6 chr1 173898128 173898303 -23297129 - B2_Mm2 SINE B2 -14 181 8 6 1911 1271 87 0 0 chr1 173898336 173898509 -23296923 + RLTR11B LTR ERVK 1 173 -280 6 1911 1051 167 99 0 chr1 173898540 173898732 -23296700 + B3 SINE B2 1 211 -5 6 1911 381 303 0 135 chr1 173898874 173899015 -23296417 + ID_B1 SINE B4 88 209 -15 6 1911 446 301 119 61 chr1 173899201 173899710 -23295722 + RMER20B LTR ERVK 194 619 -23 6 1911 704 187 58 0 chr1 173899816 173899955 -23295477 + B1_Mus1 SINE Alu 2 148 0 6 1911 207 100 0 0 chr1 173899957 173899987 -23295445 + (GAA)n Simple_repeat Simple_repeat 2 31 0 6 1911 922 316 98 41 chr1 173900984 173901353 -23294079 - LTR16B LTR ERVL -73 390 1 6 1911 2513 124 76 0 chr1 173901396 173901790 -23293642 - RLTR23 LTR ERV1 0 430 7 6 1911 423 0 0 0 chr1 173901792 173901839 -23293593 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1911 369 197 0 0 chr1 173901839 173901915 -23293517 + (CATA)n Simple_repeat Simple_repeat 4 79 0 6 1911 633 300 124 51 chr1 173901941 173902342 -23293090 + L1MEc LINE L1 1049 1481 -4919 6 1911 4638 133 7 15 chr1 173902342 173903077 -23292355 + Lx LINE L1 5926 6654 0 6 1911 250 294 64 64 chr1 173903182 173903415 -23292017 + L1MEc LINE L1 1650 1882 -4533 6 1911 5537 86 13 3 chr1 173903426 173904210 -23291222 + L1_Mm LINE L1 1822 2613 -3270 6 1911 4864 72 3 23 chr1 173904210 173904863 -23290569 + L1_Mus2 LINE L1 5927 6566 0 6 1911 315 288 53 18 chr1 173904879 173905049 -23290383 + L1MEc LINE L1 663 838 -5562 6 1911 624 229 153 0 chr1 173905050 173905207 -23290225 + B3A SINE B2 1 181 -17 6 1911 369 243 185 31 chr1 173905268 173905506 -23289926 + L1MEc LINE L1 1540 1806 -4609 6 1911 1006 200 171 13 chr1 173905597 173905878 -23289554 + ORR1D2 LTR MaLR 3 374 0 6 1911 656 209 90 0 chr1 173906402 173906536 -23288896 + B1_Mur3 SINE Alu 3 148 -1 6 1911 336 175 0 0 chr1 173906536 173906599 -23288833 + GA-rich Low_complexity Low_complexity 2 64 0 6 1911 2302 165 34 41 chr1 173906606 173907074 -23288358 + RLTR31A_Mm LTR ERVK 1 465 -119 6 1911 424 236 33 11 chr1 173907621 173907711 -23287721 + RSINE1 SINE B4 5 96 -69 6 1911 1038 36 70 42 chr1 173907715 173907858 -23287574 + B1_Mus2 SINE Alu 1 147 0 6 1911 864 191 0 0 chr1 173907859 173908032 -23287400 + GA-rich Low_complexity Low_complexity 3 175 0 6 1911 390 207 51 51 chr1 173908142 173908259 -23287173 - PB1D7 SINE Alu -1 119 3 6 1911 235 297 21 111 chr1 173908261 173908323 -23287109 + L1ME2 LINE L1 6017 6070 -94 6 1911 1041 52 0 0 chr1 173908323 173908458 -23286974 + L1Md_F2 LINE L1 6436 6570 -12 6 1911 235 297 21 111 chr1 173908458 173908539 -23286893 + L1ME2 LINE L1 6071 6147 -17 6 1911 1058 221 14 14 chr1 173908799 173909015 -23286417 + B3 SINE B2 1 216 0 6 1911 329 239 95 22 chr1 173909043 173909180 -23286252 - L1MB8 LINE L1 -14 6164 6018 6 1911 183 387 19 9 chr1 173909287 173909394 -23286038 - L3 LINE CR1 -78 4411 4304 6 1911 2152 143 176 18 chr1 173909843 173910298 -23285134 - RLTR11A2 LTR ERVK 0 527 1 6 1911 214 309 35 58 chr1 173910606 173910692 -23284740 - PB1 SINE Alu 0 127 44 6 1911 1668 175 134 37 chr1 173910946 173911326 -23284106 - MTD LTR MaLR -2 417 1 6 1911 334 212 61 0 chr1 173911549 173911615 -23283817 - ID4_ SINE ID -10 73 4 6 1911 184 392 0 20 chr1 173911654 173911753 -23283679 - MIRc SINE MIR -45 223 127 7 1911 531 0 0 0 chr1 173912105 173912164 -23283268 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1911 189 0 0 0 chr1 173912844 173912865 -23282567 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 7 1911 298 296 168 27 chr1 173912877 173913139 -23282293 + L1M5 LINE L1 5166 5464 -660 7 1911 225 265 118 0 chr1 173913290 173913358 -23282074 + B4 SINE B4 201 276 -16 7 1911 249 278 80 30 chr1 173913410 173913510 -23281922 + PB1D10 SINE Alu 5 109 -8 7 1911 341 321 0 18 chr1 173913511 173913622 -23281810 + GA-rich Low_complexity Low_complexity 1 109 0 7 1911 24 0 0 0 chr1 173914133 173914157 -23281275 + AT_rich Low_complexity Low_complexity 1 24 0 7 1911 381 256 0 12 chr1 173914168 173914251 -23281181 + PB1D9 SINE Alu 3 84 -36 7 1911 9218 111 18 23 chr1 173914281 173915649 -23279783 - Lx4A LINE L1 0 7058 5698 7 1911 581 0 0 14 chr1 173915670 173915740 -23279692 + (TAA)n Simple_repeat Simple_repeat 3 71 0 7 1911 1135 209 18 5 chr1 173915757 173915978 -23279454 + URR1B DNA MER1_type 1 224 -1 7 1911 2150 214 20 9 chr1 173915984 173916432 -23279000 + RLTR17 LTR ERVK 167 619 -73 7 1911 1711 205 41 18 chr1 173916631 173917268 -23278164 + RMER3D-int LTR ERVK 198 1372 -1470 7 1911 180 0 0 0 chr1 173917268 173917288 -23278144 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1911 181 111 0 77 chr1 173917414 173917453 -23277979 + L3 LINE CR1 1977 2012 -2477 7 1911 5486 172 94 61 chr1 173917453 173917924 -23277508 + RMER3D-int LTR ERVK 1442 1923 -919 7 1911 1446 74 0 11 chr1 173917924 173918115 -23277317 + B2_Mm2 SINE B2 2 190 -5 7 1911 5486 172 94 61 chr1 173918115 173918997 -23276435 + RMER3D-int LTR ERVK 1924 2839 -3 7 1911 1230 188 14 58 chr1 173919006 173919282 -23276150 + RLTR17 LTR ERVK 105 368 -324 7 1911 390 196 0 0 chr1 173919298 173919395 -23276037 + GA-rich Low_complexity Low_complexity 2 98 0 7 1911 2361 90 12 58 chr1 173919554 173919897 -23275535 - ORR1A2 LTR MaLR 0 327 1 7 1911 3337 31 0 0 chr1 173919939 173920325 -23275107 + L1Md_F2 LINE L1 6184 6569 -13 7 1911 180 0 0 0 chr1 173920329 173920349 -23275083 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1911 306 295 0 49 chr1 173920351 173920433 -23274999 + B4A SINE B4 83 160 -132 7 1911 2655 190 19 59 chr1 173920409 173920981 -23274451 + RLTR20B3 LTR ERVK 5 553 -24 7 1911 428 143 0 106 chr1 173920996 173921090 -23274342 + B1_Mur4 SINE Alu 47 130 -20 7 1911 273 57 0 0 chr1 173921097 173921132 -23274300 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 7 1911 873 211 41 61 chr1 173921399 173921579 -23273853 - ID_B1 SINE B4 -6 218 42 7 1911 2373 114 104 19 chr1 173921579 173921954 -23273478 + MTB_Mm LTR MaLR 1 407 0 7 1911 873 211 41 61 chr1 173921954 173921970 -23273462 - ID SINE ID -183 41 26 7 1911 270 0 0 0 chr1 173922943 173922973 -23272459 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 7 1911 216 0 0 0 chr1 173923009 173923033 -23272399 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7 1911 910 133 0 7 chr1 173923033 173923169 -23272263 - B1_Mur3 SINE Alu -13 136 2 7 1911 330 123 0 0 chr1 173923442 173923499 -23271933 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1911 400 312 116 0 chr1 173923505 173923617 -23271815 - B3 SINE B2 -67 149 25 7 1911 595 190 0 57 chr1 173923821 173923944 -23271488 - PB1D10 SINE Alu 0 117 2 7 1911 841 159 7 40 chr1 173924093 173924244 -23271188 - B1_Mur4 SINE Alu 0 150 5 7 1911 434 242 60 1 chr1 173924591 173924701 -23270731 + MLT1B LTR MaLR 281 386 -4 7 1911 226 296 60 24 chr1 173924716 173924730 -23270702 + MER5A1 DNA MER1_type 63 76 -90 7 1911 791 139 66 0 chr1 173924730 173924852 -23270580 + B1_Mus1 SINE Alu 1 130 -18 7 1911 226 296 60 24 chr1 173924852 173924920 -23270512 + MER5A1 DNA MER1_type 77 148 -18 7 1911 856 274 66 7 chr1 173925518 173925805 -23269627 - L1MC1 LINE L1 -4 6329 6026 7 1911 235 349 15 0 chr1 173926116 173926182 -23269250 + L2c LINE L2 3286 3352 -35 7 1911 900 147 11 11 chr1 173926321 173926500 -23268932 + CT-rich Low_complexity Low_complexity 2 180 0 7 1911 763 163 43 22 chr1 173927055 173927193 -23268239 - B1_Mus2 SINE Alu -5 142 2 7 1911 409 225 318 23 chr1 173927570 173927743 -23267689 + ID_B1 SINE B4 1 224 0 7 1911 1673 36 0 0 chr1 173927746 173927939 -23267493 + B2_Mm1t SINE B2 1 193 0 7 1911 306 0 0 0 chr1 173927983 173928017 -23267415 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1911 794 276 159 27 chr1 173928023 173928202 -23267230 - B4A SINE B4 0 292 79 7 1911 2029 49 133 0 chr1 173928202 173928466 -23266966 - L1_Mus1 LINE L1 0 6567 6269 7 1911 794 276 159 27 chr1 173928466 173928543 -23266889 - B4A SINE B4 -214 78 2 7 1911 677 266 70 16 chr1 173928622 173928809 -23266623 - B3 SINE B2 -19 197 1 7 1911 227 233 48 121 chr1 173929153 173929236 -23266196 + PB1D7 SINE Alu 18 94 -26 7 1911 225 0 0 0 chr1 173929306 173929331 -23266101 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1911 861 107 13 79 chr1 173929337 173929489 -23265943 - B1_Mus2 SINE Alu -1 146 5 7 1911 327 305 0 0 chr1 173929507 173929589 -23265843 + PB1 SINE Alu 28 109 -18 7 1911 3201 146 67 9 chr1 173929613 173930194 -23265238 - L1_Mur3 LINE L1 -516 5364 4750 7 1911 871 119 0 8 chr1 173930195 173930322 -23265110 + L1_Mur3 LINE L1 5381 5506 -374 7 1911 624 206 89 19 chr1 173930325 173930483 -23264949 + Lx6 LINE L1 7291 7459 -1 7 1911 850 241 5 67 chr1 173930515 173930724 -23264708 - B3A SINE B2 -2 196 1 7 1911 27 0 0 0 chr1 173931104 173931131 -23264301 + AT_rich Low_complexity Low_complexity 1 27 0 7 1911 24 0 0 0 chr1 173931215 173931239 -23264193 + AT_rich Low_complexity Low_complexity 1 24 0 7 1911 215 238 0 0 chr1 173931329 173931371 -23264061 + A-rich Low_complexity Low_complexity 1 42 0 7 1911 428 35 17 0 chr1 173932181 173932239 -23263193 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1912 244 130 18 36 chr1 173932664 173932720 -23262712 + CT-rich Low_complexity Low_complexity 2 56 0 7 1912 395 119 17 0 chr1 173933835 173933894 -23261538 - HAL1-3A_ME LINE L1 -823 2035 1976 7 1912 561 140 0 0 chr1 173933911 173934096 -23261336 + (TG)n Simple_repeat Simple_repeat 1 185 0 7 1912 184 30 0 57 chr1 173934588 173934623 -23260809 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1912 405 0 0 0 chr1 173935378 173935423 -23260009 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1912 1143 113 0 0 chr1 173935811 173935970 -23259462 + B2_Mm2 SINE B2 2 160 -35 7 1912 289 130 361 26 chr1 173936024 173936132 -23259300 + B2_Mm2 SINE B2 47 190 -5 7 1912 1043 24 0 0 chr1 173936778 173936903 -23258529 + B1_Mm SINE Alu 23 147 0 7 1912 525 135 2 29 chr1 173937156 173937265 -23258167 + B1_Mur1 SINE Alu 44 148 -1 7 1912 985 261 4 26 chr1 173937303 173937531 -23257901 + B4 SINE B4 70 292 0 7 1912 401 266 60 108 chr1 173937659 173937891 -23257541 + MLT1E LTR MaLR 433 653 0 7 1912 405 0 0 0 chr1 173939178 173939223 -23256209 + (TAA)n Simple_repeat Simple_repeat 2 46 0 7 1912 197 33 0 32 chr1 173939459 173939490 -23255942 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 7 1912 394 239 236 42 chr1 173940557 173940701 -23254731 + MER5B DNA MER1_type 2 173 -5 7 1912 416 291 24 0 chr1 173940729 173940856 -23254576 + MER5A1 DNA MER1_type 5 134 -32 7 1912 287 247 206 0 chr1 173941103 173941200 -23254232 + PB1D10 SINE Alu 1 117 0 7 1912 769 220 0 8 chr1 173941204 173941337 -23254095 + ID_B1 SINE B4 80 211 -13 7 1912 269 256 42 53 chr1 173942610 173942669 -23252763 + PB1D9 SINE Alu 26 86 -34 7 1912 515 187 91 27 chr1 173942669 173942779 -23252653 + PB1D9 SINE Alu 2 118 -2 7 1912 269 256 42 53 chr1 173942779 173942814 -23252618 + PB1D9 SINE Alu 87 119 -1 7 1912 576 0 0 0 chr1 173943842 173943906 -23251526 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1912 242 158 148 66 chr1 173944410 173944471 -23250961 - ID4_ SINE ID -16 67 2 7 1912 28 0 0 0 chr1 173944919 173944947 -23250485 + AT_rich Low_complexity Low_complexity 1 28 0 7 1912 329 289 63 80 chr1 173946055 173946292 -23249140 + MIRb SINE MIR 19 251 -17 7 1912 462 91 0 0 chr1 173947574 173947651 -23247781 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1912 444 163 0 0 chr1 173949417 173949503 -23245929 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1912 185 353 40 3 chr1 173951170 173951306 -23244126 + MIRc SINE MIR 71 213 -49 7 1912 703 179 13 40 chr1 173951311 173951453 -23243979 + B1_Mur1 SINE Alu 2 140 -9 7 1912 1082 112 6 0 chr1 173951453 173951622 -23243810 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 7 1912 841 161 192 11 chr1 173951680 173951862 -23243570 + B3 SINE B2 2 216 0 7 1912 276 248 57 107 chr1 173952994 173953007 -23242425 + MT2B LTR ERVL 145 151 -450 7 1912 580 237 0 54 chr1 173953007 173953154 -23242278 + B1_Mur1 SINE Alu 1 139 -10 7 1912 390 42 0 0 chr1 173953154 173953202 -23242230 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 7 1912 597 303 138 9 chr1 173953203 173953274 -23242158 + L1MB5 LINE L1 5765 5847 -327 7 1912 270 0 0 0 chr1 173953274 173953304 -23242128 + (CATA)n Simple_repeat Simple_repeat 3 32 0 7 1912 597 303 138 9 chr1 173953304 173953572 -23241860 + L1MB5 LINE L1 5848 6148 -26 7 1912 234 410 57 16 chr1 173953899 173954092 -23241340 - MIRb SINE MIR -8 260 60 7 1912 285 197 0 0 chr1 173955231 173955302 -23240130 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 1912 200 303 0 0 chr1 173956153 173956219 -23239213 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1912 225 0 0 0 chr1 173956237 173956262 -23239170 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1912 459 0 0 0 chr1 173956272 173956323 -23239109 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1912 429 20 0 0 chr1 173956387 173956437 -23238995 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1912 221 146 0 20 chr1 173957041 173957090 -23238342 + CT-rich Low_complexity Low_complexity 1 48 0 7 1912 22 0 0 0 chr1 173957100 173957122 -23238310 + GC_rich Low_complexity Low_complexity 1 22 0 8 1912 217 209 14 56 chr1 173957417 173957488 -23237944 + G-rich Low_complexity Low_complexity 5 72 0 8 1912 6251 103 21 15 chr1 173959811 173960756 -23234676 + Lx4A LINE L1 6108 7058 0 8 1912 1318 90 16 5 chr1 173960787 173960977 -23234455 + B2_Mm2 SINE B2 4 195 0 8 1912 594 0 0 0 chr1 173961209 173961275 -23234157 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 8 1912 1307 86 0 21 chr1 173961453 173961483 -23233949 - B2_Mm1t SINE B2 -6 187 161 8 1912 258 32 0 0 chr1 173961483 173961514 -23233918 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1912 1307 86 0 21 chr1 173961514 173961674 -23233758 - B2_Mm1t SINE B2 -33 160 1 8 1912 333 47 0 0 chr1 173961686 173961729 -23233703 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 8 1912 248 159 0 0 chr1 173961730 173961774 -23233658 - ORR1B1 LTR MaLR -23 344 301 8 1912 1000 170 89 15 chr1 173961795 173961998 -23233434 - ORR1B1 LTR MaLR -138 256 39 8 1912 454 206 0 89 chr1 173961996 173962068 -23233364 - B3A SINE B2 -96 102 40 8 1912 1217 124 0 20 chr1 173962068 173962265 -23233167 - B2_Mm2 SINE B2 -1 194 2 8 1912 454 206 0 89 chr1 173962265 173962304 -23233128 - B3A SINE B2 -159 39 1 8 1912 382 301 27 34 chr1 173962375 173962523 -23232909 + B1F1 SINE Alu 2 148 -1 8 1912 289 246 0 42 chr1 173962573 173962645 -23232787 + ID4_ SINE ID 1 69 -14 8 1912 872 264 15 0 chr1 173962716 173962917 -23232515 - B3 SINE B2 -11 205 2 8 1912 1460 33 43 0 chr1 173962969 173963153 -23232279 + B2_Mm1t SINE B2 2 193 0 8 1912 386 267 34 25 chr1 173963185 173963304 -23232128 + PB1 SINE Alu 1 120 -7 8 1912 412 274 27 35 chr1 173963379 173963588 -23231844 + L1MD LINE L1 4366 4563 -1583 8 1912 310 292 11 33 chr1 173963604 173963696 -23231736 + PB1D10 SINE Alu 11 100 -17 8 1912 426 94 0 0 chr1 173963715 173963779 -23231653 + B2_Mm2 SINE B2 2 65 -130 8 1912 566 161 0 0 chr1 173963771 173963864 -23231568 - MTC LTR MaLR -328 93 1 8 1912 436 260 89 0 chr1 173963864 173963986 -23231446 + RSINE1 SINE B4 31 163 -2 8 1912 378 308 22 51 chr1 173964071 173964208 -23231224 + ID_B1 SINE B4 8 140 -84 8 1912 435 222 0 57 chr1 173964239 173964331 -23231101 + ID_B1 SINE B4 123 210 -14 8 1912 875 73 0 8 chr1 173964331 173964456 -23230976 + (GAA)n Simple_repeat Simple_repeat 3 126 0 8 1912 435 222 0 57 chr1 173964456 173964468 -23230964 + ID_B1 SINE B4 211 221 -3 8 1912 303 278 14 0 chr1 173964588 173964660 -23230772 + ID4 SINE ID 2 74 -9 8 1912 351 293 104 8 chr1 173964777 173964911 -23230521 + B1F SINE Alu 1 147 -2 8 1912 780 188 61 28 chr1 173965259 173965440 -23229992 - B2_Mm2 SINE B2 -8 187 1 8 1912 1783 169 13 62 chr1 173965467 173965839 -23229593 - ORR1B1 LTR MaLR 0 394 41 8 1912 5223 197 86 16 chr1 173966035 173967225 -23228207 + Lx9 LINE L1 6371 7643 -1 8 1912 233 338 13 13 chr1 173967616 173967691 -23227741 + RSINE1 SINE B4 87 161 -4 8 1912 515 315 0 7 chr1 173967779 173967929 -23227503 + RSINE1 SINE B4 2 150 -15 8 1912 201 196 0 19 chr1 173967964 173968016 -23227416 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 8 1912 1515 27 0 21 chr1 173968109 173968298 -23227134 - B2_Mm1a SINE B2 -7 186 2 8 1912 3613 197 111 42 chr1 173968299 173969171 -23226261 - RMER19B LTR ERVK -18 884 19 8 1912 270 0 0 0 chr1 173969297 173969327 -23226105 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1912 432 0 0 0 chr1 173969510 173969558 -23225874 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1912 548 259 28 7 chr1 173969570 173969714 -23225718 - B3A SINE B2 -50 148 2 8 1912 386 295 35 9 chr1 173969739 173969852 -23225580 - B1F SINE Alu -8 141 26 8 1912 406 157 0 0 chr1 173969865 173969935 -23225497 - B1_Mur1 SINE Alu -38 111 42 8 1912 397 278 0 34 chr1 173970264 173970383 -23225049 + PB1D9 SINE Alu 6 120 0 8 1912 426 242 39 128 chr1 173970440 173970620 -23224812 + B4 SINE B4 2 165 -127 8 1912 253 172 16 94 chr1 173970684 173970748 -23224684 + RSINE1 SINE B4 107 165 0 8 1912 933 151 7 0 chr1 173970828 173970974 -23224458 + B1_Mus2 SINE Alu 1 147 0 8 1912 391 335 40 63 chr1 173970974 173970995 -23224437 + B4A SINE B4 118 248 -44 8 1912 668 185 34 0 chr1 173971315 173971434 -23223998 - B3 SINE B2 -92 124 2 8 1912 810 182 14 0 chr1 173971549 173971692 -23223740 + B1_Mur2 SINE Alu 4 148 -1 8 1912 500 280 44 19 chr1 173971719 173971834 -23223598 + RSINE1 SINE B4 2 119 -46 8 1912 909 69 0 0 chr1 173971834 173971964 -23223468 + (CA)n Simple_repeat Simple_repeat 1 130 0 8 1912 500 280 44 19 chr1 173971964 173972008 -23223424 + RSINE1 SINE B4 120 165 0 8 1912 1260 136 197 103 chr1 173972680 173973040 -23222392 - ORR1B1 LTR MaLR 0 394 1 8 1912 863 166 7 0 chr1 173973104 173973249 -23222183 + B1_Mur4 SINE Alu 2 147 -3 8 1912 189 0 0 0 chr1 173973249 173973270 -23222162 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1912 1206 48 0 0 chr1 173973277 173973424 -23222008 + B1_Mus2 SINE Alu 1 147 0 8 1912 200 59 0 29 chr1 173973505 173973540 -23221892 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1912 321 95 15 31 chr1 173974380 173974445 -23220987 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 1912 1855 160 33 22 chr1 173974471 173974836 -23220596 - ORR1D1 LTR MaLR 0 374 6 8 1912 260 294 82 0 chr1 173974838 173974923 -23220509 - PB1D10 SINE Alu -22 95 4 8 1912 1191 124 17 0 chr1 173974948 173975125 -23220307 - B2_Mm2 SINE B2 -14 181 2 8 1912 481 236 202 12 chr1 173975158 173975321 -23220111 - B3A SINE B2 0 198 5 8 1912 228 35 0 0 chr1 173975601 173975630 -23219802 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1912 245 289 0 80 chr1 173975682 173975793 -23219639 - ID4_ SINE ID -45 107 5 8 1912 198 103 0 0 chr1 173976390 173976419 -23219013 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1912 378 259 191 0 chr1 173976711 173976842 -23218590 + B3A SINE B2 2 157 -41 8 1912 195 162 0 0 chr1 173976845 173976882 -23218550 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1912 342 0 0 0 chr1 173977481 173977519 -23217913 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1912 909 128 0 0 chr1 173977702 173977882 -23217550 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1912 425 198 190 0 chr1 173977886 173977958 -23217474 - B1_Mus1 SINE Alu -5 143 58 8 1912 186 43 0 0 chr1 173977958 173977981 -23217451 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 8 1912 425 198 190 0 chr1 173977981 173978024 -23217408 - B1_Mus1 SINE Alu -91 57 7 8 1912 216 235 83 36 chr1 173978033 173978117 -23217315 - MIRb SINE MIR -53 215 128 8 1912 559 210 0 56 chr1 173978166 173978292 -23217140 + PB1D7 SINE Alu 1 119 -1 8 1912 205 226 32 0 chr1 173978305 173978398 -23217034 + GA-rich Low_complexity Low_complexity 1 96 0 8 1912 216 0 0 0 chr1 173978842 173978866 -23216566 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1912 582 75 0 0 chr1 173978866 173978946 -23216486 + (GA)n Simple_repeat Simple_repeat 1 80 0 8 1912 500 237 34 48 chr1 173979297 173979443 -23215989 - B1F2 SINE Alu -1 148 5 8 1912 462 257 0 9 chr1 173980005 173980119 -23215313 + PB1D10 SINE Alu 4 116 -1 8 1912 379 336 0 0 chr1 173980144 173980248 -23215184 + PB1D10 SINE Alu 4 107 -10 8 1912 248 220 0 0 chr1 173980263 173980313 -23215119 + GA-rich Low_complexity Low_complexity 3 52 0 8 1912 406 279 167 6 chr1 173980916 173981096 -23214336 - ID_B1 SINE B4 -3 221 13 8 1912 264 40 60 0 chr1 173981113 173981163 -23214269 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1912 471 295 23 23 chr1 173981372 173981504 -23213928 + ID_B1 SINE B4 84 215 -9 8 1912 1463 38 0 31 chr1 173981578 173981769 -23213663 + B2_Mm1t SINE B2 2 186 -7 8 1912 387 73 0 0 chr1 173982871 173982926 -23212506 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 8 1912 451 306 45 53 chr1 173984845 173985111 -23210321 + L1MB2 LINE L1 5015 5278 -862 8 1912 413 254 86 41 chr1 173985114 173985265 -23210167 + PB1D10 SINE Alu 6 149 0 8 1912 693 316 102 49 chr1 173985265 173986043 -23209389 + L1MB2 LINE L1 5331 6149 -22 8 1912 215 330 10 0 chr1 173987030 173987127 -23208305 + CT-rich Low_complexity Low_complexity 1 98 0 8 1912 279 179 0 0 chr1 173987653 173987720 -23207712 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1912 368 223 207 7 chr1 173988873 173989013 -23206419 + MIRb SINE MIR 67 234 -34 8 1912 522 0 0 0 chr1 173989610 173989668 -23205764 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1912 280 160 40 0 chr1 173989684 173989759 -23205673 + (CAGA)n Simple_repeat Simple_repeat 4 81 0 8 1912 210 373 36 9 chr1 173990391 173990502 -23204930 + MIRb SINE MIR 91 204 -64 8 1912 378 0 0 0 chr1 173990614 173990656 -23204776 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1912 492 32 0 0 chr1 173990656 173990717 -23204715 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1912 202 189 37 19 chr1 173992126 173992180 -23203252 + CT-rich Low_complexity Low_complexity 1 55 0 8 1912 246 290 78 20 chr1 173992769 173992871 -23202561 + MIR SINE MIR 45 152 -56 8 1912 330 302 52 10 chr1 173992876 173992973 -23202459 + PB1D7 SINE Alu 3 103 -17 8 1912 819 0 0 0 chr1 173992980 173993071 -23202361 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 8 1912 381 78 0 155 chr1 173993082 173993295 -23202137 + GA-rich Low_complexity Low_complexity 1 180 0 8 1912 375 98 0 0 chr1 173993334 173993395 -23202037 + (ATG)n Simple_repeat Simple_repeat 1 61 0 8 1912 594 162 0 0 chr1 173993975 173994074 -23201358 + B1_Mur1 SINE Alu 40 138 -11 8 1912 354 45 0 0 chr1 173994074 173994118 -23201314 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 8 1912 482 254 84 7 chr1 173994192 173994335 -23201097 + RSINE1 SINE B4 12 165 0 8 1912 1107 180 45 0 chr1 174000726 174000926 -23194506 + B3 SINE B2 3 211 -5 1 1912 852 160 14 0 chr1 174001058 174001202 -23194230 + B1_Mus1 SINE Alu 3 148 0 2 1912 254 151 38 0 chr1 174001202 174001255 -23194177 + GA-rich Low_complexity Low_complexity 4 58 0 3 1912 393 234 179 90 chr1 174003555 174003823 -23191609 + B4 SINE B4 1 292 0 4 1912 247 186 229 0 chr1 174003932 174004002 -23191430 - B1F SINE Alu -21 128 43 5 1912 354 174 160 20 chr1 174004170 174004270 -23191162 - PB1D10 SINE Alu -3 114 1 6 1912 695 180 72 0 chr1 174005714 174005853 -23189579 - B1_Mur1 SINE Alu 0 149 1 7 1912 1247 34 7 0 chr1 174006968 174007114 -23188318 - B1_Mus2 SINE Alu 0 147 1 8 1912 1306 47 47 12 chr1 174007242 174007414 -23188018 + B2_Mm1t SINE B2 2 179 -14 9 1912 407 73 0 0 chr1 174007442 174007497 -23187935 + B2_Mm2 SINE B2 47 101 -94 1 1912 26 50 0 0 chr1 174007511 174007551 -23187881 + AT_rich Low_complexity Low_complexity 1 40 0 1 1912 198 0 0 0 chr1 174008130 174008152 -23187280 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1912 462 270 0 0 chr1 174008780 174008880 -23186552 + PB1D10 SINE Alu 5 104 -13 1 1912 1179 34 0 33 chr1 174008891 174009043 -23186389 - B1_Mus2 SINE Alu 0 147 1 1 1912 232 250 0 0 chr1 174009056 174009104 -23186328 + A-rich Low_complexity Low_complexity 4 51 0 1 1912 303 299 0 0 chr1 174009328 174009395 -23186037 - ID4 SINE ID -13 70 4 1 1912 418 285 40 8 chr1 174009562 174009686 -23185746 - ID_B1 SINE B4 -95 129 2 1 1912 473 282 58 122 chr1 174009698 174010009 -23185423 - B4 SINE B4 0 292 2 1 1912 804 200 61 15 chr1 174010052 174010250 -23185182 - B3 SINE B2 -8 208 2 1 1912 239 150 0 0 chr1 174010440 174010480 -23184952 + PB1D10 SINE Alu 69 108 -9 2 1912 3135 61 0 12 chr1 174010618 174011019 -23184413 + MTA_Mm LTR MaLR 1 396 0 2 1912 193 315 31 42 chr1 174011021 174011117 -23184315 + MIRb SINE MIR 65 159 -109 2 1912 189 0 0 0 chr1 174013482 174013503 -23181929 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2 1912 310 309 85 28 chr1 174013747 174013972 -23181460 + MIRb SINE MIR 2 236 -26 2 1912 236 280 10 106 chr1 174014011 174014115 -23181317 + B1_Mus2 SINE Alu 54 147 0 2 1912 619 199 49 56 chr1 174014148 174014292 -23181140 + B1_Mur1 SINE Alu 2 144 -5 2 1912 654 223 96 0 chr1 174014301 174014458 -23180974 + B3A SINE B2 2 173 -25 2 1912 490 292 0 0 chr1 174014807 174014920 -23180512 + PB1D7 SINE Alu 1 113 -7 2 1912 245 136 11 0 chr1 174014946 174014997 -23180435 + B1_Mus2 SINE Alu 46 98 -51 2 1912 212 179 51 0 chr1 174015071 174015110 -23180322 + RSINE1 SINE B4 5 45 -120 3 1912 280 21 85 0 chr1 174015160 174015207 -23180225 + (GTTTG)n Simple_repeat Simple_repeat 1 51 0 3 1912 731 213 43 0 chr1 174015211 174015352 -23180080 - B1_Mus1 SINE Alu -1 147 1 3 1912 310 294 33 0 chr1 174015448 174015540 -23179892 - PB1D10 SINE Alu 0 117 23 3 1912 282 56 0 0 chr1 174015540 174015576 -23179856 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1912 577 280 20 34 chr1 174015661 174015809 -23179623 + RSINE1 SINE B4 4 149 -16 3 1912 555 311 122 30 chr1 174016084 174016485 -23178947 + L1MEc LINE L1 55 492 -5908 3 1912 1197 190 5 0 chr1 174016492 174016697 -23178735 + B3 SINE B2 1 206 -10 3 1912 309 269 52 31 chr1 174016726 174016822 -23178610 + PB1D7 SINE Alu 10 107 -13 3 1912 741 281 22 22 chr1 174016850 174017032 -23178400 + B3A SINE B2 2 183 -15 3 1912 26 50 0 0 chr1 174017051 174017091 -23178341 + AT_rich Low_complexity Low_complexity 1 40 0 4 1912 294 306 159 22 chr1 174017106 174017377 -23178055 + L1MEc LINE L1 518 825 -5575 3 1912 787 149 35 28 chr1 174017387 174017532 -23177900 + B1_Mur4 SINE Alu 1 146 -3 4 1912 458 310 48 75 chr1 174017824 174018012 -23177420 + B3 SINE B2 9 191 -25 4 1912 1234 67 78 6 chr1 174018033 174018212 -23177220 - B2_Mm1a SINE B2 0 193 2 4 1912 820 147 96 0 chr1 174018354 174018490 -23176942 + B1_Mur4 SINE Alu 2 150 0 4 1912 201 162 0 26 chr1 174018498 174018536 -23176896 + GA-rich Low_complexity Low_complexity 3 39 0 4 1912 645 193 76 0 chr1 174018999 174019144 -23176288 + RSINE1 SINE B4 2 157 -8 4 1912 236 345 0 87 chr1 174019436 174019528 -23175904 - L2c LINE L2 -11 3376 3293 4 1912 384 208 28 0 chr1 174019859 174019931 -23175501 - ID4_ SINE ID -8 75 2 4 1912 1117 15 0 8 chr1 174020308 174020439 -23174993 + B1_Mus2 SINE Alu 2 131 -16 4 1912 688 266 97 15 chr1 174020788 174020994 -23174438 + ID_B1 SINE B4 1 223 -1 5 1912 226 118 0 0 chr1 174021164 174021198 -23174234 + B1F SINE Alu 109 142 -7 5 1912 304 187 108 21 chr1 174021873 174021966 -23173466 + RSINE1 SINE B4 2 102 -63 5 1912 820 153 28 0 chr1 174022029 174022173 -23173259 - B1_Mur4 SINE Alu 0 150 3 5 1912 21 36 0 0 chr1 174022805 174022833 -23172599 + AT_rich Low_complexity Low_complexity 1 28 0 5 1912 660 237 8 0 chr1 174023558 174023689 -23171743 + ID_B1 SINE B4 87 218 -6 5 1912 227 148 45 76 chr1 174023630 174023696 -23171736 + PB1 SINE Alu 64 127 0 5 1912 207 0 0 0 chr1 174026029 174026052 -23169380 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 1912 408 96 0 12 chr1 174026052 174026152 -23169280 - B2_Mm2 SINE B2 -14 181 47 5 1912 1246 93 47 0 chr1 174026175 174026347 -23169085 - B2_Mm2 SINE B2 -14 181 2 5 1912 338 314 59 0 chr1 174026625 174026727 -23168705 - PB1D7 SINE Alu -7 113 6 6 1912 872 253 36 0 chr1 174027173 174027367 -23168065 + B3 SINE B2 2 202 -14 6 1912 42 48 0 0 chr1 174027368 174027431 -23168001 + AT_rich Low_complexity Low_complexity 1 63 0 6 1912 392 210 136 27 chr1 174028008 174028155 -23167277 - RSINE1 SINE B4 0 165 3 6 1912 865 231 54 25 chr1 174028800 174029004 -23166428 - B3 SINE B2 -6 210 1 6 1912 601 291 24 0 chr1 174029090 174029255 -23166177 - Charlie1 DNA MER1_type -2572 209 41 6 1912 183 42 0 0 chr1 174029489 174029513 -23165919 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1912 292 313 0 12 chr1 174029618 174029702 -23165730 + ID4 SINE ID 1 83 0 6 1912 1536 47 0 20 chr1 174030401 174030596 -23164836 + B2_Mm1t SINE B2 1 191 -2 6 1912 248 243 129 0 chr1 174030614 174030684 -23164748 + PB1 SINE Alu 43 121 -6 6 1912 384 277 19 29 chr1 174031117 174031221 -23164211 + PB1D10 SINE Alu 8 110 -7 7 1912 526 231 124 65 chr1 174031224 174031409 -23164023 + B3A SINE B2 1 196 -2 7 1912 222 37 0 0 chr1 174031732 174031759 -23163673 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1912 244 307 0 39 chr1 174031859 174031937 -23163495 + ID4 SINE ID 5 79 -4 7 1912 528 69 0 0 chr1 174033121 174033193 -23162239 + L1Md_F2 LINE L1 6499 6570 -12 7 1912 978 53 96 22 chr1 174033284 174033420 -23162012 - B1_Mm SINE Alu 0 147 2 7 1912 459 143 20 30 chr1 174033447 174033548 -23161884 + B1_Mus2 SINE Alu 48 147 0 7 1912 776 240 100 20 chr1 174033563 174033763 -23161669 + B3 SINE B2 1 216 0 7 1912 1160 57 0 0 chr1 174036908 174037048 -23158384 - B1_Mus2 SINE Alu -6 141 2 7 1912 549 0 0 0 chr1 174037269 174037330 -23158102 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 7 1912 239 179 31 0 chr1 174037330 174037384 -23158048 - B1F SINE Alu -12 137 52 8 1912 312 208 83 0 chr1 174039009 174039081 -23156351 - ID4_ SINE ID -2 81 4 8 1912 1300 88 44 0 chr1 174039301 174039483 -23155949 - B2_Mm2 SINE B2 -2 193 4 8 1912 204 40 0 0 chr1 174039485 174039510 -23155922 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1912 649 246 7 15 chr1 174039531 174039667 -23155765 + RSINE1 SINE B4 2 136 -29 8 1912 185 313 29 29 chr1 174040319 174040388 -23155044 - L2c LINE L2 -53 3334 3266 8 1912 675 0 0 0 chr1 174041086 174041161 -23154271 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1912 198 103 0 0 chr1 174041167 174041196 -23154236 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 8 1912 279 0 0 0 chr1 174041272 174041303 -23154129 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1912 394 345 27 7 chr1 174041346 174041492 -23153940 + RSINE1 SINE B4 15 163 -2 8 1912 433 265 50 75 chr1 174041540 174041699 -23153733 + RSINE1 SINE B4 2 156 -9 9 1912 398 317 41 7 chr1 174043632 174043778 -23151654 - RSINE1 SINE B4 -12 153 3 9 1912 270 254 0 78 chr1 174044074 174044151 -23151281 - B1F SINE Alu -5 144 74 9 1912 246 265 58 14 chr1 174044295 174044364 -23151068 + RSINE1 SINE B4 91 162 -3 9 1912 842 356 54 5 chr1 174044443 174044813 -23150619 - MLT1F2 LTR MaLR -142 418 31 9 1912 396 266 199 11 chr1 174045344 174045530 -23149902 + ID_B1 SINE B4 1 221 -3 9 1912 687 194 37 33 chr1 174045534 174045712 -23149720 + B3 SINE B2 1 192 -1 9 1912 230 325 76 8 chr1 174045848 174045966 -23149466 + B1_Mur3 SINE Alu 13 138 -11 9 1912 228 163 0 0 chr1 174045983 174046026 -23149406 + A-rich Low_complexity Low_complexity 1 43 0 9 1912 268 235 0 0 chr1 174046492 174046543 -23148889 - ID4_ SINE ID -14 69 19 9 1912 382 216 0 0 chr1 174046693 174046767 -23148665 + B4A SINE B4 1 74 -218 1 1912 302 45 23 0 chr1 174047508 174047552 -23147880 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1912 617 235 105 0 chr1 174047920 174048082 -23147350 + ID_B1 SINE B4 5 183 -41 1 1912 190 333 40 0 chr1 174048833 174048908 -23146524 - MIR SINE MIR -95 167 90 1 1912 722 158 0 32 chr1 174050505 174050629 -23144803 - B1_Mur2 SINE Alu -29 120 1 1 1912 301 260 13 13 chr1 174050924 174051002 -23144430 - PB1D10 SINE Alu -12 105 28 1 1912 368 242 101 0 chr1 174051111 174051210 -23144222 - PB1D10 SINE Alu -7 110 2 1 1912 672 77 0 0 chr1 174051266 174051357 -23144075 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 1 1912 186 312 16 0 chr1 174052714 174052778 -23142654 - MIR SINE MIR 0 262 198 1 1912 641 245 25 0 chr1 174052839 174053002 -23142430 - MTE2a LTR MaLR 0 379 213 1 1912 268 208 123 14 chr1 174053051 174053124 -23142308 - B1_Mur2 SINE Alu -1 148 68 1 1912 537 260 88 7 chr1 174053198 174053345 -23142087 - MTE2a LTR MaLR -199 180 22 1 1912 344 178 312 45 chr1 174053506 174053618 -23141814 + B1_Mur2 SINE Alu 1 142 -7 1 1912 895 198 53 48 chr1 174053635 174053842 -23141590 + B3 SINE B2 1 208 -8 1 1912 202 29 57 0 chr1 174053907 174053942 -23141490 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1912 794 268 11 0 chr1 174053942 174054121 -23141311 + B3A SINE B2 3 183 -15 1 1912 300 261 0 0 chr1 174054253 174054322 -23141110 - ID4_ SINE ID 0 83 15 1 1912 285 248 176 10 chr1 174054367 174054469 -23140963 - ID_B1 SINE B4 0 224 106 1 1912 1313 60 59 27 chr1 174054520 174054707 -23140725 - B2_Mm1a SINE B2 0 193 1 1 1912 470 311 7 7 chr1 174054772 174054921 -23140511 + RSINE1 SINE B4 4 152 -13 1 1912 845 151 7 0 chr1 174054948 174055094 -23140338 + B1_Mus1 SINE Alu 2 148 0 1 1912 573 226 37 8 chr1 174055722 174055856 -23139576 + B3A SINE B2 3 140 -58 1 1912 646 179 50 7 chr1 174055873 174056014 -23139418 + B1_Mus2 SINE Alu 1 147 0 1 1912 218 342 67 17 chr1 174056239 174056358 -23139074 - RSINE1 SINE B4 0 165 41 1 1912 235 186 0 0 chr1 174056419 174056462 -23138970 + ID_B1 SINE B4 104 146 -78 1 1912 272 292 0 14 chr1 174056676 174056749 -23138683 + ID4 SINE ID 12 83 0 1 1912 349 274 0 34 chr1 174057237 174057354 -23138078 - PB1D7 SINE Alu -7 113 1 1 1912 256 294 11 32 chr1 174057564 174057659 -23137773 - ID_B1 SINE B4 -10 214 122 1 1912 1187 48 0 7 chr1 174058243 174058389 -23137043 - B1_Mus2 SINE Alu -1 146 2 1 1912 647 254 29 0 chr1 174059652 174059790 -23135642 + B1_Mur2 SINE Alu 1 142 -7 1 1912 706 177 0 8 chr1 174060196 174060327 -23135105 + B3 SINE B2 1 130 -86 1 1912 186 43 0 0 chr1 174060437 174060460 -23134972 + (TGG)n Simple_repeat Simple_repeat 2 24 0 1 1912 944 41 0 0 chr1 174060460 174060583 -23134849 + B1_Mus1 SINE Alu 17 139 -9 1 1912 180 0 0 0 chr1 174060583 174060603 -23134829 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1912 1260 75 64 0 chr1 174061174 174061347 -23134085 - B2_Mm2 SINE B2 -10 185 2 1 1912 1369 67 79 0 chr1 174061611 174061629 -23133803 - B2_Mm1t SINE B2 0 193 176 1 1912 279 0 0 0 chr1 174061629 174061660 -23133772 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1912 1369 67 79 0 chr1 174061660 174061819 -23133613 - B2_Mm1t SINE B2 -18 175 3 1 1912 650 259 19 90 chr1 174061845 174062057 -23133375 - B3A SINE B2 0 198 2 1 1912 1009 236 5 15 chr1 174062092 174062298 -23133134 + B3 SINE B2 2 205 -11 1 1912 648 263 61 31 chr1 174062331 174062527 -23132905 + B3 SINE B2 9 210 -6 1 1912 875 249 225 14 chr1 174062581 174062786 -23132646 + MTD LTR MaLR 1 218 -201 1 1912 1227 27 14 0 chr1 174062786 174062932 -23132500 + B1_Mus1 SINE Alu 1 148 0 1 1912 875 249 225 14 chr1 174062932 174063072 -23132360 + MTD LTR MaLR 219 418 -1 1 29 2187 161 42 22 chr1 174063543 174063995 -23131437 - RMER4A LTR ERVK 0 466 6 1 1913 306 118 20 0 chr1 174065785 174065836 -23129596 - Lx8 LINE L1 -2 7471 7420 1 1913 189 0 0 0 chr1 174065840 174065861 -23129571 + (CACCC)n Simple_repeat Simple_repeat 4 24 0 1 1913 189 0 0 0 chr1 174066294 174066315 -23129117 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1913 429 354 45 6 chr1 174066483 174066659 -23128773 - Charlie10 DNA MER1_type -2560 262 80 1 1913 1281 20 0 0 chr1 174066903 174067049 -23128383 - B1_Mus2 SINE Alu 0 147 2 1 1913 52 0 0 0 chr1 174067310 174067362 -23128070 + AT_rich Low_complexity Low_complexity 1 52 0 1 1913 1223 48 0 0 chr1 174067438 174067585 -23127847 + B1_Mm SINE Alu 1 147 0 1 1913 501 168 32 0 chr1 174067601 174067696 -23127736 - B3A SINE B2 -98 100 3 1 1913 380 298 39 19 chr1 174068166 174068320 -23127112 - MT2A LTR ERVL -128 405 249 1 1913 577 296 84 11 chr1 174068502 174068693 -23126739 + B3 SINE B2 1 205 -11 1 1913 278 227 54 54 chr1 174069239 174069332 -23126100 - RSINE1 SINE B4 0 165 73 1 1913 264 294 94 16 chr1 174069380 174069508 -23125924 + MER58A DNA MER1_type 86 223 -1 1 1913 424 208 123 0 chr1 174070123 174070253 -23125179 - RMER4A LTR ERVK 0 585 440 1 1913 1855 142 42 17 chr1 174070291 174070649 -23124783 - RMER4A LTR ERVK -99 367 1 1 1913 271 250 0 0 chr1 174070653 174070713 -23124719 + Lx7 LINE L1 7270 7329 -367 1 1913 798 157 78 0 chr1 174071349 174071502 -23123930 - MMAR1 DNA Mariner 0 1286 1122 1 1913 837 58 190 0 chr1 174071503 174071624 -23123808 + B1_Mm SINE Alu 2 145 -2 1 1913 317 340 44 13 chr1 174071876 174072034 -23123398 + L2a LINE L2 2717 2879 -540 1 1913 236 300 207 0 chr1 174072073 174072223 -23123209 + L2a LINE L2 2982 3162 -264 1 1913 779 48 0 0 chr1 174072355 174072458 -23122974 - B1_Mus1 SINE Alu -11 137 35 1 1913 1184 78 77 77 chr1 174072470 174072665 -23122767 - B2_Mm2 SINE B2 0 195 1 1 1913 207 279 122 35 chr1 174072709 174072824 -23122608 + L2a LINE L2 3301 3425 -1 1 1913 200 255 20 0 chr1 174072889 174072940 -23122492 - L2c LINE L2 -56 3331 3280 1 1913 511 184 158 0 chr1 174072978 174073092 -23122340 + B3 SINE B2 6 137 -79 1 1913 25 0 0 0 chr1 174073110 174073135 -23122297 + AT_rich Low_complexity Low_complexity 1 25 0 1 1913 217 325 60 0 chr1 174073180 174073263 -23122169 + PB1 SINE Alu 3 90 -37 1 1913 520 173 106 0 chr1 174073284 174073388 -23122044 - PB1D10 SINE Alu -1 116 2 1 1913 486 239 0 34 chr1 174073421 174073538 -23121894 + PB1D9 SINE Alu 1 113 -7 1 1913 241 304 142 9 chr1 174073703 174073816 -23121616 - L2c LINE L2 -415 3004 2877 1 1913 762 213 78 26 chr1 174073828 174074021 -23121411 - B3 SINE B2 -9 207 5 1 1913 281 317 113 0 chr1 174075107 174075249 -23120183 - L2c LINE L2 -532 2887 2730 1 1913 1187 245 81 13 chr1 174075272 174075582 -23119850 - MTE2b LTR MaLR -48 331 1 1 1913 653 246 184 0 chr1 174075632 174075811 -23119621 + ID_B1 SINE B4 5 216 -8 1 1913 467 284 22 15 chr1 174075897 174076033 -23119399 + ID_B1 SINE B4 1 137 -87 1 1913 997 99 43 0 chr1 174076497 174076638 -23118794 + B1_Mus1 SINE Alu 1 147 -1 1 1913 628 213 175 5 chr1 174076874 174077115 -23118317 + L1MA5 LINE L1 5660 5935 -365 1 1913 258 32 0 0 chr1 174077381 174077412 -23118020 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1913 263 240 51 51 chr1 174077435 174077514 -23117918 - B1F SINE Alu -40 109 31 1 1913 385 136 232 80 chr1 174077570 174077682 -23117750 + B1_Mur2 SINE Alu 20 148 -1 1 1913 511 135 10 10 chr1 174079969 174080066 -23115366 + T-rich Low_complexity Low_complexity 3 99 0 1 1913 912 225 15 0 chr1 174080443 174080643 -23114789 - B3 SINE B2 0 216 14 1 1913 609 14 0 0 chr1 174080643 174080713 -23114719 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 1913 1203 71 63 23 chr1 174080714 174080888 -23114544 - B2_Mm2 SINE B2 -14 181 1 1 1913 413 238 99 38 chr1 174080910 174081041 -23114391 - B1F SINE Alu -1 148 10 1 1913 1150 68 7 0 chr1 174081123 174081269 -23114163 + B1_Mus2 SINE Alu 1 147 0 1 1913 735 131 31 4 chr1 174081312 174081457 -23113975 + B1_Mur2 SINE Alu 6 149 -1 1 1913 497 286 34 45 chr1 174081539 174081715 -23113717 - B3A SINE B2 -6 192 19 1 1913 1009 30 50 36 chr1 174081856 174081996 -23113436 - B1_Mus1 SINE Alu -2 146 5 1 1913 991 62 20 59 chr1 174082241 174082394 -23113038 + B1_Mus1 SINE Alu 2 148 0 1 1913 1228 41 0 7 chr1 174082908 174083056 -23112376 - B1_Mus2 SINE Alu 0 147 1 1 1913 481 297 65 0 chr1 174083167 174083305 -23112127 - ID_B1 SINE B4 0 224 78 1 1913 473 306 35 0 chr1 174083299 174083443 -23111989 - B1F SINE Alu 0 149 1 1 1913 391 257 59 0 chr1 174083587 174083688 -23111744 + PB1D10 SINE Alu 3 109 -8 1 1913 183 80 0 0 chr1 174083786 174083811 -23111621 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1913 726 279 167 14 chr1 174083920 174084280 -23111152 + Tigger7 DNA MER2_type 1 415 -2076 1 1913 233 224 51 17 chr1 174084300 174084359 -23111073 + B1F SINE Alu 19 79 -70 1 1913 815 178 14 7 chr1 174084485 174084632 -23110800 + B1_Mus1 SINE Alu 1 148 0 1 1913 253 229 265 0 chr1 174084724 174084807 -23110625 - ID_B1 SINE B4 -29 195 91 1 1913 379 230 57 57 chr1 174084900 174085006 -23110426 + PB1D10 SINE Alu 1 106 -11 1 1913 681 102 0 18 chr1 174085098 174085208 -23110224 - B1_Mm SINE Alu -9 138 31 1 1913 1488 78 5 0 chr1 174085319 174085510 -23109922 - B2_Mm1a SINE B2 0 193 2 1 1913 309 232 0 79 chr1 174086500 174086589 -23108843 - PB1D7 SINE Alu 0 120 39 1 1913 1169 49 21 0 chr1 174086638 174086782 -23108650 - B1_Mus1 SINE Alu 0 148 2 1 1913 261 109 0 0 chr1 174086964 174087010 -23108422 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 2 1913 577 241 0 0 chr1 174087010 174087118 -23108314 - PB1D9 SINE Alu -11 109 2 2 1913 205 86 0 28 chr1 174087322 174087338 -23108094 + (TTTA)n Simple_repeat Simple_repeat 1 16 0 2 1913 866 118 65 14 chr1 174087338 174087476 -23107956 - B1_Mus2 SINE Alu 0 147 3 2 1913 205 86 0 28 chr1 174087476 174087495 -23107937 + (TTTA)n Simple_repeat Simple_repeat 2 20 0 2 1913 1167 61 0 26 chr1 174087500 174087651 -23107781 - B1_Mm SINE Alu 0 147 1 2 1913 273 214 86 19 chr1 174087651 174087756 -23107676 - Lx9 LINE L1 0 7644 7533 2 1913 188 0 74 0 chr1 174087761 174087788 -23107644 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1913 195 69 0 0 chr1 174087793 174087822 -23107610 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2 1913 25 0 0 0 chr1 174087881 174087906 -23107526 + AT_rich Low_complexity Low_complexity 1 25 0 2 1913 2226 56 0 59 chr1 174087949 174087984 -23107448 - L1Md_F2 LINE L1 -12 6570 6550 2 1913 1700 26 0 0 chr1 174087984 174088176 -23107256 - B2_Mm1a SINE B2 0 193 2 2 1913 2226 56 0 59 chr1 174088176 174088461 -23106971 - L1Md_F2 LINE L1 -33 6549 6269 2 1913 956 96 0 0 chr1 174088461 174088596 -23106836 - B2_Mm2 SINE B2 -50 145 11 2 1913 549 273 42 31 chr1 174088684 174088877 -23106555 - B3A SINE B2 0 198 4 2 1913 945 310 49 66 chr1 174088975 174089766 -23105666 - L1ME1 LINE L1 -15 6164 5387 2 1913 298 237 13 0 chr1 174089825 174089901 -23105531 - B1_Mur1 SINE Alu -24 125 49 2 1913 236 235 138 38 chr1 174090001 174090160 -23105272 - L1ME1 LINE L1 -930 5216 5042 2 1913 345 164 0 0 chr1 174090389 174090462 -23104970 + T-rich Low_complexity Low_complexity 1 73 0 2 1913 755 194 0 7 chr1 174090463 174090598 -23104834 - B1_Mur4 SINE Alu 0 150 17 2 1913 219 324 53 86 chr1 174090469 174090621 -23104811 - B4A SINE B4 -71 221 75 2 1913 736 341 43 17 chr1 174091112 174091458 -23103974 - MLT1A LTR MaLR 0 374 20 2 1913 276 53 0 0 chr1 174091572 174091610 -23103822 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1913 431 300 90 56 chr1 174091636 174091904 -23103528 - B4A SINE B4 -14 278 2 2 1913 321 286 111 10 chr1 174092081 174092180 -23103252 - RSINE1 SINE B4 -17 148 40 2 1913 862 227 47 38 chr1 174092231 174092442 -23102990 - B3 SINE B2 -2 214 2 2 1913 539 268 28 0 chr1 174092447 174092589 -23102843 - B1F1 SINE Alu 0 149 4 2 1913 560 218 90 8 chr1 174093034 174093168 -23102264 - ID_B1 SINE B4 0 224 80 2 1913 235 313 37 83 chr1 174093071 174093179 -23102253 - MT2B LTR ERVL -347 254 152 2 1913 620 157 93 36 chr1 174093321 174093460 -23101972 - B1_Mur4 SINE Alu 0 150 4 2 1913 557 237 141 6 chr1 174094121 174094273 -23101159 + B3 SINE B2 7 167 -49 2 1913 363 73 0 0 chr1 174094273 174094328 -23101104 + (CATA)n Simple_repeat Simple_repeat 4 58 0 2 1913 557 237 141 6 chr1 174094328 174094345 -23101087 + B3 SINE B2 168 198 -18 2 1913 519 209 9 9 chr1 174094392 174094503 -23100929 + PB1D7 SINE Alu 10 120 0 2 1913 687 132 91 49 chr1 174095293 174095436 -23099996 - B1_Mur3 SINE Alu 0 149 1 2 1913 1166 192 0 32 chr1 174096285 174096505 -23098927 - B3 SINE B2 -3 213 1 2 1913 543 31 0 0 chr1 174096842 174096907 -23098525 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1913 293 327 65 7 chr1 174097321 174097475 -23097957 + MER58A DNA MER1_type 54 216 -8 2 1913 374 268 10 20 chr1 174097634 174097733 -23097699 - RSINE1 SINE B4 -62 103 6 2 1913 301 326 131 131 chr1 174098698 174098810 -23096622 + ID_B1 SINE B4 2 223 -1 2 1913 455 318 0 0 chr1 174098810 174098920 -23096512 + PB1D7 SINE Alu 10 119 -1 2 1913 385 295 78 0 chr1 174099048 174099177 -23096255 + RSINE1 SINE B4 17 155 -10 2 1913 514 241 21 55 chr1 174099612 174099757 -23095675 + B1F1 SINE Alu 1 140 -9 2 1913 1368 243 96 11 chr1 174099810 174100184 -23095248 - Lx8 LINE L1 -2 7471 7066 2 1913 1082 241 142 25 chr1 174100219 174100572 -23094860 - Lx8 LINE L1 -489 6984 6591 2 1913 240 202 25 25 chr1 174100653 174100675 -23094757 + polypyrimidine Low_complexity Low_complexity 64 85 0 2 1913 1304 82 55 0 chr1 174100675 174100857 -23094575 - B2_Mm1t SINE B2 0 193 2 2 1913 240 202 25 25 chr1 174100857 174100915 -23094517 + CT-rich Low_complexity Low_complexity 5 63 0 2 1913 503 182 0 22 chr1 174100915 174101005 -23094427 - B1_Mur1 SINE Alu -5 144 57 2 1913 941 196 69 0 chr1 174101038 174101227 -23094205 - B3 SINE B2 -6 210 9 2 1913 546 318 109 63 chr1 174101241 174101895 -23093537 - Lx8 LINE L1 -949 6524 5841 2 1913 543 16 0 0 chr1 174101963 174102027 -23093405 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1913 297 318 0 34 chr1 174102028 174102116 -23093316 - ID_B1 SINE B4 -57 167 83 2 1913 407 252 76 19 chr1 174102196 174102301 -23093131 - ID_B1 SINE B4 -32 192 82 2 1913 228 290 116 0 chr1 174104441 174104455 -23090977 + B4A SINE B4 65 86 -206 2 1913 294 254 0 19 chr1 174104455 174104535 -23090897 + PB1D7 SINE Alu 2 76 -73 2 1913 796 166 71 7 chr1 174105046 174105186 -23090246 - B1_Mur4 SINE Alu -1 149 1 2 1913 384 264 27 18 chr1 174105399 174105511 -23089921 - PB1D9 SINE Alu -6 114 2 2 1913 486 282 125 71 chr1 174105827 174105995 -23089437 - B3A SINE B2 -18 180 4 2 1913 240 35 0 0 chr1 174106333 174106362 -23089070 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1913 222 150 0 0 chr1 174106362 174106402 -23089030 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1913 536 224 39 31 chr1 174106566 174106695 -23088737 - RSINE1 SINE B4 -29 136 7 2 1913 243 0 0 0 chr1 174107012 174107039 -23088393 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1913 378 0 0 0 chr1 174107039 174107080 -23088352 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1913 546 232 64 0 chr1 174107117 174107242 -23088190 - ID_B1 SINE B4 -7 217 85 2 1913 297 0 0 0 chr1 174107268 174107301 -23088131 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1913 447 199 113 3 chr1 174107859 174107962 -23087470 - RSINE1 SINE B4 -51 114 3 2 1913 655 312 73 5 chr1 174108127 174108346 -23087086 - B4A SINE B4 -58 234 1 2 1913 858 179 65 25 chr1 174108557 174108757 -23086675 - B3 SINE B2 -5 211 4 2 1913 384 59 0 0 chr1 174108878 174108929 -23086503 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1913 1113 44 0 0 chr1 174108930 174109066 -23086366 - B1_Mus1 SINE Alu -12 136 1 2 1913 1292 107 21 0 chr1 174109069 174109256 -23086176 - B2_Mm2 SINE B2 -3 192 2 2 1913 359 309 58 18 chr1 174109264 174109435 -23085997 - ID_B1 SINE B4 0 224 47 2 1913 242 29 29 0 chr1 174109796 174109831 -23085601 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1913 370 229 133 30 chr1 174109847 174109982 -23085450 - B1F SINE Alu 0 149 1 2 1913 1140 88 0 13 chr1 174110518 174110668 -23084764 - B1_Mus1 SINE Alu 0 148 1 2 1913 22 35 0 0 chr1 174110823 174110852 -23084580 + AT_rich Low_complexity Low_complexity 1 29 0 2 1913 365 267 147 0 chr1 174110890 174111006 -23084426 - RSINE1 SINE B4 -31 134 2 2 1913 665 247 0 27 chr1 174111524 174111674 -23083758 - B3 SINE B2 -5 211 66 2 1913 180 0 0 0 chr1 174112730 174112750 -23082682 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2 1913 1105 46 15 0 chr1 174112750 174112881 -23082551 - B1_Mus1 SINE Alu -12 136 4 2 1913 282 333 90 0 chr1 174112905 174112983 -23082449 + B3A SINE B2 72 156 -42 2 1913 198 0 0 0 chr1 174113372 174113394 -23082038 + (TGG)n Simple_repeat Simple_repeat 1 22 0 2 1913 363 238 188 0 chr1 174113397 174113498 -23081934 - PB1D9 SINE Alu 0 120 1 2 1913 273 136 0 0 chr1 174113550 174113590 -23081842 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1913 1182 68 7 0 chr1 174113590 174113736 -23081696 - B1_Mus2 SINE Alu 0 147 1 2 1913 273 136 0 0 chr1 174113736 174113754 -23081678 + (T)n Simple_repeat Simple_repeat 1 18 0 2 1913 1108 103 0 0 chr1 174113770 174113916 -23081516 + B1_Mus1 SINE Alu 3 148 0 2 1913 495 264 38 23 chr1 174114299 174114431 -23081001 - ID_B1 SINE B4 0 224 91 2 1913 415 322 96 36 chr1 174115143 174115423 -23080009 - MER44A DNA MER2_type 0 339 43 2 1913 962 223 39 24 chr1 174115506 174115713 -23079719 + B3 SINE B2 7 216 0 2 1913 239 25 0 111 chr1 174115864 174115885 -23079547 + (A)n Simple_repeat Simple_repeat 1 17 0 2 1913 1273 41 0 0 chr1 174115885 174116031 -23079401 + B1_Mm SINE Alu 2 147 0 2 1913 239 25 0 111 chr1 174116031 174116054 -23079378 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1913 743 256 75 9 chr1 174116061 174116274 -23079158 + B4 SINE B4 11 237 -55 2 1913 375 283 176 7 chr1 174116595 174116748 -23078684 + MIRb SINE MIR 43 221 -47 2 1913 378 259 53 29 chr1 174118022 174118193 -23077239 - MER5B DNA MER1_type -3 175 1 2 1913 1009 160 193 0 chr1 174118519 174118700 -23076732 + B3 SINE B2 1 216 0 2 1913 22 35 0 0 chr1 174118701 174118730 -23076702 + AT_rich Low_complexity Low_complexity 1 29 0 2 1913 252 184 0 0 chr1 174121864 174121913 -23073519 + (CCCTG)n Simple_repeat Simple_repeat 5 53 0 2 1913 255 31 0 0 chr1 174123092 174123124 -23072308 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1913 4625 34 0 0 chr1 174123196 174123753 -23071679 - L1Md_A LINE L1 0 6582 6044 2 1913 271 237 90 26 chr1 174123754 174123832 -23071600 - PB1D10 SINE Alu -12 105 23 2 1913 512 242 98 38 chr1 174124362 174124495 -23070937 + MER58B DNA MER1_type 184 324 -17 2 1913 229 210 114 92 chr1 174128168 174128299 -23067133 + MER50B LTR ERV1 340 473 -224 2 1913 1208 62 0 0 chr1 174128941 174129085 -23066347 + B1_Mus1 SINE Alu 2 145 -3 3 1913 185 0 0 39 chr1 174129085 174129111 -23066321 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1913 236 308 35 76 chr1 174129112 174129256 -23066176 - RMER12 LTR ERVK -486 836 699 3 1913 231 277 158 11 chr1 174130156 174130251 -23065181 - RSINE1 SINE B4 -52 113 5 3 1913 504 0 0 0 chr1 174130934 174130990 -23064442 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1913 768 110 102 0 chr1 174131758 174131876 -23063556 + B3 SINE B2 1 130 -86 3 1913 502 243 9 28 chr1 174131988 174132094 -23063338 + PB1D10 SINE Alu 3 106 -11 3 1913 276 30 0 0 chr1 174133351 174133384 -23062048 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1913 400 172 113 83 chr1 174134883 174135016 -23060416 - BC1_Mm scRNA scRNA -15 137 1 3 1913 689 0 12 0 chr1 174135260 174135341 -23060091 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1913 212 227 0 0 chr1 174136810 174136854 -23058578 + (CCG)n Simple_repeat Simple_repeat 2 45 0 3 1913 185 196 18 0 chr1 174136918 174136974 -23058458 + G-rich Low_complexity Low_complexity 3 59 0 3 1913 183 42 0 0 chr1 174137886 174137910 -23057522 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 3 1913 211 292 191 0 chr1 174138527 174138616 -23056816 + PB1D10 SINE Alu 10 115 -2 3 1913 792 147 14 22 chr1 174139258 174139397 -23056035 - B1_Mur3 SINE Alu -1 148 11 3 1913 212 272 139 56 chr1 174139722 174139866 -23055566 + L2b LINE L2 3210 3365 -10 3 1913 312 137 0 0 chr1 174140478 174140529 -23054903 + (TCG)n Simple_repeat Simple_repeat 2 52 0 3 1913 198 0 0 0 chr1 174141097 174141119 -23054313 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1913 409 162 12 75 chr1 174141133 174141213 -23054219 + B1_Mur4 SINE Alu 11 85 -65 3 1913 420 244 107 50 chr1 174141216 174141337 -23054095 - B1F2 SINE Alu -21 128 1 3 1913 235 240 64 91 chr1 174141251 174141361 -23054071 - MT2B LTR ERVL -349 252 146 3 1913 213 39 0 0 chr1 174141707 174141733 -23053699 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 3 1913 345 47 0 0 chr1 174142473 174142516 -23052916 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1913 671 213 159 6 chr1 174142531 174142701 -23052731 - B3A SINE B2 -1 197 2 3 1913 201 289 0 0 chr1 174143528 174143580 -23051852 + G-rich Low_complexity Low_complexity 2 53 0 3 1913 512 253 189 29 chr1 174144524 174144699 -23050733 - MER20 DNA MER1_type 0 219 17 3 1913 232 279 0 0 chr1 174144923 174144984 -23050448 - L2b LINE L2 -6 3369 3309 3 1913 203 221 196 21 chr1 174145375 174145472 -23049960 + MIR3 SINE MIR 82 195 -13 3 1913 398 108 15 0 chr1 174146413 174146478 -23048954 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1913 234 265 0 0 chr1 174146595 174146663 -23048769 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 3 1913 471 18 0 0 chr1 174146790 174146846 -23048586 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1913 220 261 0 0 chr1 174147505 174147551 -23047881 + G-rich Low_complexity Low_complexity 2 47 0 3 1913 186 43 0 0 chr1 174147632 174147655 -23047777 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1913 465 231 46 9 chr1 174147694 174147803 -23047629 - PB1D10 SINE Alu 0 117 5 3 1913 180 0 0 0 chr1 174152038 174152058 -23043374 + (CCCCCT)n Simple_repeat Simple_repeat 3 22 0 3 1913 23 0 0 0 chr1 174152531 174152554 -23042878 + GC_rich Low_complexity Low_complexity 1 23 0 3 1913 240 239 0 0 chr1 174152846 174152892 -23042540 + ID4_ SINE ID 3 48 -35 3 1913 725 204 7 20 chr1 174153353 174153503 -23041929 - B1_Mur1 SINE Alu 0 149 2 3 1913 573 318 60 45 chr1 174154879 174155170 -23040262 + B4A SINE B4 3 274 -18 3 1913 265 206 61 49 chr1 174155243 174155406 -23040026 - Charlie5 DNA MER1_type -14 2610 2446 3 1913 400 279 21 23 chr1 174155461 174155581 -23039851 - PB1D10 SINE Alu -26 124 7 3 1913 281 353 8 8 chr1 174155581 174155698 -23039734 - Charlie5 DNA MER1_type -155 2469 2353 3 1913 458 244 63 24 chr1 174155712 174155838 -23039594 - ID_B1 SINE B4 -16 208 78 3 1913 614 168 11 1 chr1 174155932 174156040 -23039392 - B1_Mus1 SINE Alu -5 115 1 3 1913 382 256 69 55 chr1 174156040 174156172 -23039260 - MER3 DNA MER1_type -34 175 42 3 1913 219 351 56 49 chr1 174156242 174156404 -23039028 - L2c LINE L2 -1 3386 3224 3 1913 591 203 7 65 chr1 174156606 174156759 -23038673 + RLTR15 LTR ERVK 1 144 -215 3 1913 493 300 76 8 chr1 174156824 174156955 -23038477 - ID_B1 SINE B4 -2 222 83 3 1913 217 198 0 0 chr1 174157963 174158012 -23037420 + BC1_Mm scRNA scRNA 9 57 -26 3 1913 286 282 111 16 chr1 174158060 174158186 -23037246 - L2c LINE L2 -89 3298 3161 3 1913 253 279 14 42 chr1 174158348 174158419 -23037013 + B4A SINE B4 81 149 -143 3 1913 439 286 1 26 chr1 174158365 174158498 -23036934 + PB1D10 SINE Alu 11 133 -15 3 1913 420 345 83 40 chr1 174158567 174158639 -23036793 + L2 LINE L2 701 776 -2643 3 1913 198 0 0 0 chr1 174158639 174158661 -23036771 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1913 420 345 83 40 chr1 174158661 174158938 -23036494 + L2 LINE L2 777 1065 -2354 3 1913 540 0 0 0 chr1 174158947 174159007 -23036425 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1913 296 292 58 65 chr1 174159022 174159057 -23036375 + B4 SINE B4 53 190 -102 3 1913 418 206 10 67 chr1 174159057 174159161 -23036271 + B1_Mus2 SINE Alu 2 99 -48 3 1913 519 182 8 91 chr1 174159323 174159444 -23035988 + ORR1D2 LTR MaLR 256 366 -4 3 1913 767 178 160 0 chr1 174159444 174159613 -23035819 + B3A SINE B2 1 196 -2 3 1913 3808 225 60 20 chr1 174159661 174160541 -23034891 + ORR1D2-int LTR MaLR 15 929 -441 3 1913 369 0 0 0 chr1 174160612 174160653 -23034779 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 1913 1123 88 0 7 chr1 174160658 174160807 -23034625 - B1_Mus1 SINE Alu 0 148 1 3 1913 547 259 83 15 chr1 174161076 174161209 -23034223 - B1F SINE Alu -5 144 3 3 1913 571 214 0 0 chr1 174161584 174161682 -23033750 + ORR1D2-int LTR MaLR 1009 1106 -264 3 1913 265 64 20 41 chr1 174162580 174162629 -23032803 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 3 1913 330 26 0 0 chr1 174163031 174163070 -23032362 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1913 364 228 154 24 chr1 174163076 174163222 -23032210 + L2a LINE L2 3237 3421 -5 3 1913 350 91 18 0 chr1 174163683 174163738 -23031694 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1913 531 297 155 10 chr1 174163738 174163932 -23031500 - ID_B1 SINE B4 -1 223 2 3 1913 204 40 0 0 chr1 174165575 174165600 -23029832 + (CCTTG)n Simple_repeat Simple_repeat 5 29 0 3 1913 572 125 192 77 chr1 174167602 174167784 -23027648 + MYSERV6-int LTR ERVK 6472 6674 -2285 3 1913 675 287 12 52 chr1 174167936 174168186 -23027246 + BGLII_B LTR ERVK 201 440 -1 3 1913 629 262 27 20 chr1 174168660 174168808 -23026624 + RSINE1 SINE B4 3 151 -14 3 1913 378 74 0 0 chr1 174168810 174168864 -23026568 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1913 1085 119 0 11 chr1 174169303 174169482 -23025950 + (GGGGA)n Simple_repeat Simple_repeat 4 180 0 3 1913 184 355 0 26 chr1 174170594 174170672 -23024760 + MIRm SINE MIR 59 134 -142 3 1913 619 266 93 5 chr1 174170714 174170907 -23024525 - B3 SINE B2 -6 210 1 3 1913 288 0 0 0 chr1 174170907 174170939 -23024493 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1913 748 132 274 7 chr1 174171579 174171732 -23023700 + B2_Mm2 SINE B2 1 194 -1 3 1913 484 274 34 0 chr1 174171743 174171860 -23023572 + RSINE1 SINE B4 2 122 -43 3 1913 735 191 80 7 chr1 174171907 174172044 -23023388 + B1_Mur2 SINE Alu 2 148 -1 3 1913 723 223 43 0 chr1 174172101 174172240 -23023192 - B1_Mur1 SINE Alu -1 148 4 3 1913 848 172 14 7 chr1 174172276 174172422 -23023010 + B1_Mus1 SINE Alu 1 147 -1 3 1913 397 234 93 99 chr1 174172287 174172448 -23022984 + MT2B LTR ERVL 175 334 -267 3 1913 411 171 9 19 chr1 174173299 174173406 -23022026 + CT-rich Low_complexity Low_complexity 1 106 0 3 1913 348 283 0 110 chr1 174173406 174173533 -23021899 - PB1D7 SINE Alu -7 113 1 3 1913 330 105 0 50 chr1 174173638 174173698 -23021734 + B1_Mus2 SINE Alu 91 147 0 3 1913 1442 64 16 21 chr1 174175844 174176036 -23019396 + B2_Mm2 SINE B2 5 195 0 3 1913 279 316 222 36 chr1 174176038 174176426 -23019006 + L3 LINE CR1 4028 4487 -2 3 1913 181 241 93 0 chr1 174176520 174176574 -23018858 + L2 LINE L2 1469 1527 -1892 3 1913 2141 294 93 5 chr1 174177216 174177837 -23017595 + MER21B LTR ERV1 45 720 -143 3 1913 395 83 17 0 chr1 174178446 174178506 -23016926 + (GGA)n Simple_repeat Simple_repeat 1 61 0 3 1913 660 258 55 7 chr1 174178734 174178904 -23016528 + B3A SINE B2 1 176 -40 3 1913 300 127 0 0 chr1 174178904 174178959 -23016473 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1913 520 283 53 48 chr1 174178959 174178977 -23016455 + B2_Mm2 SINE B2 168 189 -6 3 1913 785 188 14 27 chr1 174179583 174179731 -23015701 + B1_Mur2 SINE Alu 4 149 0 3 1913 254 196 77 51 chr1 174180169 174180255 -23015177 + MIRb SINE MIR 6 93 -183 3 1913 188 270 118 20 chr1 174180728 174180830 -23014602 - MIRb SINE MIR -26 242 131 3 1913 352 323 7 80 chr1 174181647 174181785 -23013647 + MLT1H LTR MaLR 46 173 -376 3 1913 2030 220 47 32 chr1 174181817 174182323 -23013109 + Lx5 LINE L1 6534 7047 -3 3 1913 26 0 0 0 chr1 174182788 174182814 -23012618 + AT_rich Low_complexity Low_complexity 1 26 0 3 1913 552 126 0 0 chr1 174183006 174183093 -23012339 + (CATA)n Simple_repeat Simple_repeat 3 89 0 3 1913 685 215 17 63 chr1 174183094 174183268 -23012164 - B3 SINE B2 -13 203 38 3 1913 1276 181 203 17 chr1 174183272 174183620 -23011812 - MTD LTR MaLR -8 413 1 3 1913 309 302 95 90 chr1 174183662 174183884 -23011548 - L1MC4 LINE L1 -226 7816 7594 4 1913 1007 97 56 103 chr1 174184585 174184780 -23010652 + B2_Mm2 SINE B2 1 186 -9 4 1913 188 280 39 39 chr1 174185445 174185523 -23009909 - L2c LINE L2 -20 3367 3290 4 1913 550 295 50 0 chr1 174185543 174185682 -23009750 + RSINE1 SINE B4 18 163 -2 4 1913 299 194 0 22 chr1 174186092 174186169 -23009263 + B1_Mur2 SINE Alu 47 149 0 4 1913 320 336 18 36 chr1 174186408 174186482 -23008950 + ORR1E LTR MaLR 246 318 -41 4 1913 1762 165 99 9 chr1 174186482 174186665 -23008767 - ORR1D1 LTR MaLR 0 374 175 4 1913 535 93 37 0 chr1 174186665 174186772 -23008660 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 4 1913 1762 165 99 9 chr1 174186772 174186931 -23008501 - ORR1D1 LTR MaLR -200 174 2 4 1913 320 336 18 36 chr1 174186931 174186967 -23008465 + ORR1E LTR MaLR 319 354 -5 4 1913 704 251 84 123 chr1 174186970 174187066 -23008366 + Charlie1b DNA MER1_type 142 227 -296 4 1913 752 173 103 22 chr1 174187066 174187202 -23008230 + B1_Mur1 SINE Alu 2 148 -1 4 1913 704 251 84 123 chr1 174187202 174187329 -23008103 + Charlie1b DNA MER1_type 228 354 -169 4 1913 225 258 212 0 chr1 174187329 174187395 -23008037 - ID4 SINE ID 0 83 4 4 1913 704 251 84 123 chr1 174187395 174187551 -23007881 + Charlie1b DNA MER1_type 355 507 -16 4 1913 200 200 0 57 chr1 174188228 174188281 -23007151 + G-rich Low_complexity Low_complexity 2 51 0 4 1913 293 378 16 16 chr1 174188832 174188961 -23006471 - B1F2 SINE Alu -20 129 1 4 1913 214 322 122 34 chr1 174189007 174189155 -23006277 + MIR SINE MIR 32 192 -70 4 1913 639 327 67 53 chr1 174189169 174189453 -23005979 + RCHARR1 DNA MER1_type 4 291 -683 4 1913 345 117 0 0 chr1 174189459 174189519 -23005913 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1913 518 289 32 26 chr1 174189519 174189667 -23005765 - RSINE1 SINE B4 -8 157 8 4 1913 1330 213 176 22 chr1 174189675 174190079 -23005353 + RCHARR1 DNA MER1_type 322 787 -187 4 1913 565 275 18 123 chr1 174190276 174190446 -23004986 + RSINE1 SINE B4 4 155 -10 4 1913 252 242 10 52 chr1 174190551 174190647 -23004785 - Lx9 LINE L1 -40 7604 7513 4 1913 629 186 15 68 chr1 174190873 174191006 -23004426 + B1_Mus1 SINE Alu 3 128 -20 4 1913 252 59 0 0 chr1 174191044 174191078 -23004354 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 1913 904 262 84 8 chr1 174191139 174191389 -23004043 + B4A SINE B4 1 269 -23 4 1913 246 32 0 0 chr1 174191389 174191420 -23004012 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1913 391 253 11 42 chr1 174191443 174191538 -23003894 + PB1D10 SINE Alu 26 117 0 4 1913 308 259 54 125 chr1 174192060 174192228 -23003204 - L1M LINE L1 -734 5428 5273 4 1913 25 0 0 0 chr1 174192283 174192308 -23003124 + AT_rich Low_complexity Low_complexity 1 25 0 4 1913 207 108 27 0 chr1 174192415 174192452 -23002980 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 4 1913 501 17 0 0 chr1 174192556 174192614 -23002818 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1913 358 283 40 40 chr1 174192614 174192756 -23002676 - Lx7 LINE L1 -383 7313 7170 4 1913 222 37 0 0 chr1 174192780 174192807 -23002625 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 4 1913 4004 172 50 11 chr1 174192818 174193342 -23002090 - Lx6 LINE L1 -179 7281 6750 4 1913 432 0 0 0 chr1 174193342 174193390 -23002042 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1913 4004 172 50 11 chr1 174193390 174193628 -23001804 - Lx6 LINE L1 -711 6749 6490 4 1913 185 239 54 40 chr1 174193852 174193926 -23001506 + L2a LINE L2 3347 3421 -5 4 1913 1216 121 0 0 chr1 174194073 174194247 -23001185 + B2_Mm2 SINE B2 3 176 -19 4 239 1702 194 49 35 chr1 174194651 174195019 -23000413 - ORR1D1 LTR MaLR -1 373 1 4 1914 488 299 19 9 chr1 174195115 174195223 -23000209 - PB1D10 SINE Alu -8 109 1 4 1914 841 271 16 98 chr1 174195237 174195319 -23000113 - B4A SINE B4 -1 291 225 4 1914 423 0 0 0 chr1 174195319 174195366 -23000066 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1914 841 271 16 98 chr1 174195366 174195598 -22999834 - B4A SINE B4 -68 224 5 4 1914 498 247 11 25 chr1 174195663 174195801 -22999631 - B3A SINE B2 -18 198 60 4 1914 2241 114 12 35 chr1 174195804 174196149 -22999283 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1914 10921 107 107 31 chr1 174196151 174198338 -22997094 + IAPEz-int LTR ERVK 3 2345 -4136 4 1914 354 125 0 0 chr1 174198337 174198393 -22997039 + IAPEz-int LTR ERVK 2719 2774 -3707 4 1914 2992 22 0 0 chr1 174198391 174198748 -22996684 + IAPEz-int LTR ERVK 4001 4357 -2124 4 1914 6385 25 3 7 chr1 174198739 174199508 -22995924 + IAPEz-int LTR ERVK 5709 6474 -7 4 1914 2198 114 14 35 chr1 174199515 174199859 -22995573 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1914 311 235 0 14 chr1 174199859 174199920 -22995512 - B3 SINE B2 -154 62 2 4 1914 363 307 59 0 chr1 174199928 174200029 -22995403 - PB1D10 SINE Alu -10 107 1 4 1914 680 174 33 36 chr1 174200064 174200201 -22995231 + B1_Mur1 SINE Alu 14 149 0 4 1914 762 238 13 133 chr1 174200493 174200511 -22994921 - B3 SINE B2 -9 207 195 4 1914 1624 180 130 3 chr1 174200511 174200850 -22994582 + ORR1C2 LTR MaLR 3 384 0 4 1914 762 238 13 133 chr1 174200850 174201025 -22994407 - B3 SINE B2 -22 194 38 4 1914 1673 21 11 0 chr1 174201025 174201216 -22994216 - B2_Mm1a SINE B2 0 193 1 4 1914 762 238 13 133 chr1 174201216 174201254 -22994178 - B3 SINE B2 -179 37 3 4 1914 525 133 0 0 chr1 174201285 174201383 -22994049 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 4 1914 1384 187 20 31 chr1 174201413 174201667 -22993765 + 7SLRNA srpRNA srpRNA 5 255 -59 4 1914 192 321 58 10 chr1 174201715 174201841 -22993591 - L2a LINE L2 -213 3162 3027 4 1914 671 306 80 70 chr1 174202577 174202964 -22992468 - MamRep434 DNA TcMar -28 398 8 4 1914 1174 89 89 6 chr1 174203097 174203277 -22992155 - B2_Mm2 SINE B2 0 195 1 4 1914 1113 57 0 19 chr1 174204092 174204253 -22991179 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 4 1914 262 263 243 54 chr1 174205149 174205266 -22990166 - Charlie8 DNA MER1_type -2204 224 74 4 1914 510 17 0 0 chr1 174205266 174205325 -22990107 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1914 262 263 243 54 chr1 174205325 174205392 -22990040 - Charlie8 DNA MER1_type -2355 73 5 4 1914 229 288 244 16 chr1 174205446 174205573 -22989859 + MIR3 SINE MIR 33 188 -20 4 1914 368 169 0 17 chr1 174205596 174205656 -22989776 + URR1B DNA MER1_type 1 59 -166 4 1914 1136 123 5 58 chr1 174205725 174205915 -22989517 + URR1B DNA MER1_type 46 225 0 4 1914 384 22 0 0 chr1 174206593 174206638 -22988794 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1914 23 0 0 0 chr1 174207240 174207263 -22988169 + AT_rich Low_complexity Low_complexity 1 23 0 4 1914 378 221 15 0 chr1 174209230 174209298 -22986134 + ID4_ SINE ID 5 73 -10 4 1914 293 348 61 61 chr1 174210393 174210558 -22984874 - MIRb SINE MIR -67 209 45 4 1914 387 0 0 0 chr1 174210925 174210968 -22984464 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1914 231 36 0 0 chr1 174211108 174211136 -22984296 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 4 1914 312 97 16 31 chr1 174211152 174211216 -22984216 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 4 1914 356 349 0 35 chr1 174211219 174211332 -22984100 - PB1D10 SINE Alu -5 112 4 4 1914 550 191 311 25 chr1 174211419 174211580 -22983852 - B3 SINE B2 -7 209 3 4 1914 196 286 55 77 chr1 174212178 174212269 -22983163 + MIRb SINE MIR 37 125 -143 4 1914 241 396 7 37 chr1 174213211 174213378 -22982054 + L2c LINE L2 3066 3216 -159 4 1914 238 391 32 32 chr1 174213395 174213585 -22981847 + MIRb SINE MIR 3 192 -76 4 1914 475 280 201 0 chr1 174213630 174213819 -22981613 + MIR SINE MIR 36 262 0 4 1914 180 0 0 0 chr1 174217690 174217710 -22977722 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1914 1240 69 12 0 chr1 174217710 174217870 -22977562 - B2_Mm2 SINE B2 -33 162 1 4 1914 548 269 62 7 chr1 174218216 174218362 -22977070 + RSINE1 SINE B4 3 156 -9 4 1914 312 102 0 0 chr1 174218364 174218413 -22977019 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1914 22 0 0 0 chr1 174218419 174218441 -22976991 + AT_rich Low_complexity Low_complexity 1 22 0 4 1914 232 304 0 0 chr1 174218583 174218639 -22976793 + MIRb SINE MIR 11 66 -202 4 1914 192 287 144 25 chr1 174219713 174219831 -22975601 + MIR SINE MIR 52 183 -85 4 1914 273 243 32 130 chr1 174219918 174220041 -22975391 - PB1D10 SINE Alu -6 111 1 4 1914 323 194 27 154 chr1 174219932 174220042 -22975390 - ID_B1 SINE B4 -48 176 81 4 1914 216 250 182 13 chr1 174222396 174222473 -22972959 - B1F1 SINE Alu -5 144 55 4 1914 300 356 10 0 chr1 174222486 174222587 -22972845 - PB1 SINE Alu -3 124 23 4 1914 365 247 12 0 chr1 174222611 174222692 -22972740 - ID4_ SINE ID 0 83 2 4 1914 245 330 27 54 chr1 174222704 174222816 -22972616 - PB1D10 SINE Alu -8 109 1 4 1914 219 295 124 9 chr1 174223009 174223122 -22972310 + MIRb SINE MIR 102 227 -41 4 1914 271 323 61 0 chr1 174223284 174223383 -22972049 + MIR SINE MIR 35 139 -69 4 1914 374 287 53 30 chr1 174224780 174224913 -22970519 - L1MC1 LINE L1 -15 6318 6183 4 1914 518 250 0 17 chr1 174225694 174225812 -22969620 + PB1D10 SINE Alu 1 116 -1 4 1914 387 0 0 0 chr1 174226946 174226989 -22968443 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1914 277 301 49 104 chr1 174228672 174228835 -22966597 - RMER30 DNA MER1_type 0 202 49 4 1914 549 206 94 8 chr1 174228813 174228940 -22966492 - B1_Mus2 SINE Alu -1 146 9 4 1914 654 13 0 0 chr1 174228950 174229025 -22966407 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1914 588 273 71 20 chr1 174231113 174231311 -22964121 + ID_B1 SINE B4 5 212 -12 4 1914 222 37 0 0 chr1 174231676 174231703 -22963729 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 4 1914 193 243 0 0 chr1 174233970 174234007 -22961425 - MIR SINE MIR -111 151 115 4 1914 201 176 0 0 chr1 174234429 174234463 -22960969 + A-rich Low_complexity Low_complexity 1 34 0 4 1914 304 281 19 10 chr1 174234475 174234579 -22960853 - MER5A DNA MER1_type -28 161 57 4 1914 1398 181 0 0 chr1 174235156 174235382 -22960050 + URR1A DNA MER1_type 1 226 0 4 1914 501 17 0 0 chr1 174236658 174236716 -22958716 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1914 399 89 0 0 chr1 174236716 174236772 -22958660 + (GGA)n Simple_repeat Simple_repeat 2 57 0 4 1914 918 109 0 0 chr1 174236908 174237045 -22958387 + (TG)n Simple_repeat Simple_repeat 2 138 0 4 1914 196 219 0 0 chr1 174237671 174237712 -22957720 - MIRm SINE MIR -2 274 234 4 1914 736 131 41 26 chr1 174237712 174237977 -22957455 + (CA)n Simple_repeat Simple_repeat 1 269 0 4 1914 208 319 43 0 chr1 174238057 174238126 -22957306 + MIRm SINE MIR 81 152 -124 5 1914 378 0 0 0 chr1 174238883 174238925 -22956507 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1914 756 0 0 0 chr1 174238932 174239016 -22956416 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1914 414 0 0 0 chr1 174239454 174239500 -22955932 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1914 461 175 59 13 chr1 174240788 174240914 -22954518 - PB1D9 SINE Alu -18 131 4 5 1914 250 290 66 57 chr1 174240914 174240949 -22954483 - MT2B LTR ERVL -435 166 131 5 1914 192 241 33 49 chr1 174240949 174241010 -22954422 + MIRm SINE MIR 90 149 -127 5 1914 317 93 19 0 chr1 174241097 174241151 -22954281 + (ATG)n Simple_repeat Simple_repeat 3 57 0 5 1914 187 106 42 21 chr1 174242402 174242450 -22952982 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 5 1914 222 62 0 0 chr1 174243475 174243507 -22951925 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1914 378 0 0 0 chr1 174243634 174243676 -22951756 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1914 214 300 0 16 chr1 174244977 174245038 -22950394 + G-rich Low_complexity Low_complexity 1 60 0 5 1914 510 295 126 27 chr1 174245659 174245738 -22949694 - B4 SINE B4 -1 291 215 5 1914 441 54 0 0 chr1 174245738 174245794 -22949638 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1914 225 0 0 0 chr1 174245794 174245818 -22949614 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1914 510 295 126 27 chr1 174245818 174245998 -22949434 - B4 SINE B4 -78 214 6 5 1914 220 268 0 18 chr1 174246744 174246801 -22948631 + CT-rich Low_complexity Low_complexity 1 56 0 5 1914 252 319 42 0 chr1 174246802 174246874 -22948558 - ID4_ SINE ID -2 81 7 5 1914 263 238 161 12 chr1 174246881 174246962 -22948470 - B1F SINE Alu -6 143 51 5 1914 384 341 38 8 chr1 174247060 174247193 -22948239 - B1F SINE Alu -11 138 2 5 1914 189 341 35 62 chr1 174247293 174247437 -22947995 - L2a LINE L2 -7 3419 3280 5 1914 202 51 50 25 chr1 174249230 174249270 -22946162 + (TGGGGG)n Simple_repeat Simple_repeat 2 42 0 5 1914 428 240 0 37 chr1 174250694 174250802 -22944630 - MIR SINE MIR -67 141 38 5 1914 534 224 12 139 chr1 174251738 174251904 -22943528 + MER5A DNA MER1_type 13 157 -32 5 1914 514 218 144 27 chr1 174253674 174253820 -22941612 - RSINE1 SINE B4 -2 163 1 5 1914 775 324 152 21 chr1 174253876 174254394 -22941038 - L3 LINE CR1 -290 4199 3614 5 1914 346 300 57 34 chr1 174255408 174255584 -22939848 + MIR SINE MIR 30 209 -53 5 1914 702 168 262 6 chr1 174256873 174257041 -22938391 + B3 SINE B2 1 211 -5 5 1914 1347 100 16 10 chr1 174257064 174257256 -22938176 + B2_Mm2 SINE B2 3 195 0 5 1914 246 330 45 68 chr1 174259919 174260105 -22935327 + MIRc SINE MIR 63 248 -20 5 1914 248 298 172 0 chr1 174260331 174260419 -22935013 - MIRb SINE MIR -65 203 97 5 1914 342 0 0 0 chr1 174260501 174260539 -22934893 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 5 1914 1255 238 20 34 chr1 174260676 174260968 -22934464 + B4A SINE B4 5 292 0 5 1914 2640 254 63 23 chr1 174260997 174261771 -22933661 - L1MC1 LINE L1 -46 6287 5483 5 1914 226 344 0 61 chr1 174261901 174262000 -22933432 + ID_B1 SINE B4 129 221 -3 5 1914 349 167 26 0 chr1 174262000 174262078 -22933354 + GA-rich Low_complexity Low_complexity 1 80 0 5 1914 1476 84 0 5 chr1 174262104 174262296 -22933136 + B2_Mm2 SINE B2 1 191 -4 5 1914 230 293 17 0 chr1 174262558 174262616 -22932816 + CT-rich Low_complexity Low_complexity 3 61 0 5 1914 222 37 0 0 chr1 174262620 174262647 -22932785 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 5 1914 734 144 17 17 chr1 174262651 174262827 -22932605 + CT-rich Low_complexity Low_complexity 4 179 0 5 1914 426 333 0 8 chr1 174262829 174262956 -22932476 - B1F2 SINE Alu -21 128 3 5 1914 276 253 12 24 chr1 174263145 174263230 -22932202 + GA-rich Low_complexity Low_complexity 2 85 0 5 1914 1164 109 157 25 chr1 174263255 174263452 -22931980 + URR1B DNA MER1_type 1 223 -2 5 1914 267 103 0 0 chr1 174263745 174263784 -22931648 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 5 1914 474 332 25 7 chr1 174264509 174264661 -22930771 + B4A SINE B4 1 161 -4 5 1914 603 104 0 0 chr1 174264671 174264777 -22930655 + (CA)n Simple_repeat Simple_repeat 2 107 0 5 1914 573 276 15 0 chr1 174265159 174265293 -22930139 + B1_Mur1 SINE Alu 9 144 -5 5 1914 240 167 0 0 chr1 174265606 174265654 -22929778 + C-rich Low_complexity Low_complexity 4 51 0 5 1914 252 361 9 36 chr1 174266359 174266471 -22928961 + MIR SINE MIR 26 134 -128 5 1914 316 315 0 0 chr1 174266479 174266552 -22928880 + ID_B1 SINE B4 73 145 -79 5 1914 405 0 0 0 chr1 174266960 174267005 -22928427 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 1914 1122 87 0 0 chr1 174267020 174267158 -22928274 - B1_Mus2 SINE Alu -5 142 5 5 1914 357 116 0 0 chr1 174267821 174267890 -22927542 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 5 1914 607 269 20 20 chr1 174267890 174268042 -22927390 - RSINE1 SINE B4 -11 154 3 5 1914 390 302 58 8 chr1 174268575 174268695 -22926737 - B1F SINE Alu -18 131 6 5 1914 702 203 8 0 chr1 174268917 174269045 -22926387 + B1_Mur4 SINE Alu 1 129 -21 5 1914 846 62 0 0 chr1 174269052 174269165 -22926267 + (GAA)n Simple_repeat Simple_repeat 2 114 0 5 1914 846 127 6 19 chr1 174270038 174270198 -22925234 + CT-rich Low_complexity Low_complexity 2 159 0 5 1914 227 96 74 37 chr1 174271375 174271429 -22924003 + (CCCGG)n Simple_repeat Simple_repeat 3 58 0 5 1914 191 88 0 29 chr1 174274446 174274481 -22920951 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1914 207 0 0 0 chr1 174274581 174274604 -22920828 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 1914 738 238 28 56 chr1 174274623 174274837 -22920595 + B3 SINE B2 9 216 0 5 1914 189 242 16 0 chr1 174275100 174275162 -22920270 + MIR SINE MIR 175 237 -25 5 1914 1258 245 57 21 chr1 174275623 174275902 -22919530 - B4A SINE B4 0 292 4 5 1914 243 188 0 0 chr1 174275904 174275952 -22919480 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1914 225 0 0 0 chr1 174275949 174275974 -22919458 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 5 1914 400 271 123 94 chr1 174275986 174276157 -22919275 - ID_B1 SINE B4 -46 178 3 5 1914 200 259 19 0 chr1 174276572 174276626 -22918806 + CT-rich Low_complexity Low_complexity 1 55 0 5 1914 980 362 35 36 chr1 174277375 174277868 -22917564 - Charlie1b DNA MER1_type 0 523 32 5 1914 288 327 27 45 chr1 174277978 174278090 -22917342 + MIR SINE MIR 31 140 -122 5 1914 531 276 24 0 chr1 174278114 174278241 -22917191 + B1F SINE Alu 2 131 -18 5 1914 651 94 117 68 chr1 174278749 174278894 -22916538 - B1_Mur3 SINE Alu 0 149 3 5 1914 225 0 0 0 chr1 174279331 174279356 -22916076 + (CAG)n Simple_repeat Simple_repeat 3 27 0 5 1914 589 224 281 14 chr1 174279385 174279602 -22915830 + B4A SINE B4 3 277 -15 5 1914 513 0 0 0 chr1 174281263 174281320 -22914112 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 5 1914 1043 109 0 20 chr1 174282469 174282619 -22912813 + B1_Mus1 SINE Alu 2 148 0 5 1914 231 203 0 0 chr1 174282624 174282688 -22912744 + GA-rich Low_complexity Low_complexity 3 66 0 5 1914 222 366 44 74 chr1 174283561 174283859 -22911573 - L2c LINE L2 -185 3202 2914 5 1914 263 330 56 11 chr1 174284389 174284478 -22910954 - RSINE1 SINE B4 0 165 73 5 1914 541 237 42 28 chr1 174284608 174284795 -22910637 + B3 SINE B2 1 195 0 5 1914 423 0 0 0 chr1 174285060 174285107 -22910325 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1914 762 156 0 56 chr1 174285107 174285250 -22910182 - B1_Mur2 SINE Alu -14 135 1 5 1914 180 179 51 51 chr1 174285400 174285459 -22909973 - L2 LINE L2 -1180 2239 2181 5 1914 280 258 145 38 chr1 174285840 174286020 -22909412 - MIRb SINE MIR 0 268 63 5 1914 441 0 0 0 chr1 174286203 174286252 -22909180 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1914 189 0 0 0 chr1 174286823 174286844 -22908588 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1914 468 264 92 15 chr1 174287066 174287197 -22908235 + RSINE1 SINE B4 4 144 -21 5 1914 227 299 22 44 chr1 174287340 174287431 -22908001 - MIRb SINE MIR -116 152 64 5 1914 524 265 229 24 chr1 174288247 174288417 -22907015 + ID_B1 SINE B4 8 212 -12 5 1914 235 227 0 0 chr1 174289538 174289582 -22905850 + CT-rich Low_complexity Low_complexity 4 47 0 5 1914 544 196 0 53 chr1 174289788 174289901 -22905531 - PB1D10 SINE Alu -1 116 10 5 1914 234 302 95 32 chr1 174290235 174290376 -22905056 - MIR SINE MIR -121 155 9 5 1914 353 199 10 81 chr1 174290524 174290620 -22904812 - MTEa LTR MaLR 0 379 290 5 1914 28 48 0 0 chr1 174290871 174290913 -22904519 + AT_rich Low_complexity Low_complexity 1 42 0 5 1914 222 395 26 27 chr1 174291058 174291204 -22904228 + L2a LINE L2 3254 3426 0 5 1914 207 0 0 0 chr1 174291622 174291645 -22903787 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1914 275 281 184 39 chr1 174292404 174292534 -22902898 + MIRb SINE MIR 17 167 -41 5 1914 285 253 0 67 chr1 174292534 174292623 -22902809 - ID4_ SINE ID 0 83 1 5 1914 252 297 241 21 chr1 174292623 174292644 -22902788 + MIR3 SINE MIR 168 192 -16 5 1914 798 60 0 0 chr1 174292743 174292843 -22902589 + B2_Mm2 SINE B2 2 101 -94 5 1914 881 236 19 14 chr1 174293378 174293593 -22901839 - ID_B1 SINE B4 -8 216 1 5 1914 195 167 0 0 chr1 174293637 174293679 -22901753 + A-rich Low_complexity Low_complexity 1 42 0 5 1914 838 176 35 7 chr1 174294321 174294464 -22900968 + B1_Mus2 SINE Alu 1 147 0 6 1914 263 122 0 20 chr1 174294466 174294516 -22900916 + (GGA)n Simple_repeat Simple_repeat 2 50 0 6 1914 234 298 179 0 chr1 174295361 174295445 -22899987 + MIR SINE MIR 30 128 -80 6 1914 1217 385 73 17 chr1 174296113 174296930 -22898502 - L3 LINE CR1 -530 3959 3097 6 1914 1390 72 28 0 chr1 174297013 174297194 -22898238 + B2_Mm2 SINE B2 2 187 -8 6 1914 333 82 0 0 chr1 174297238 174297287 -22898145 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1914 200 163 47 0 chr1 174298402 174298445 -22896987 + (TGGG)n Simple_repeat Simple_repeat 3 47 0 6 1914 204 67 0 0 chr1 174298633 174298663 -22896769 + (TGGGGG)n Simple_repeat Simple_repeat 3 32 0 6 1914 435 287 16 50 chr1 174298780 174298901 -22896531 + RSINE1 SINE B4 2 118 -47 6 1914 182 277 134 35 chr1 174300678 174300820 -22894612 - L3 LINE CR1 -2301 2188 2033 6 1914 909 93 0 0 chr1 174301022 174301151 -22894281 + (TC)n Simple_repeat Simple_repeat 1 129 0 6 1914 645 218 0 0 chr1 174301154 174301264 -22894168 - B1_Mur2 SINE Alu -38 111 2 6 1914 230 358 124 38 chr1 174301909 174302095 -22893337 + MTC-int LTR MaLR 772 973 -285 6 1914 423 0 0 0 chr1 174302289 174302336 -22893096 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1914 237 180 0 0 chr1 174303388 174303438 -22891994 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 6 1914 509 80 13 13 chr1 174304448 174304524 -22890908 + MTB LTR MaLR 188 263 -137 6 1914 1110 125 71 25 chr1 174304495 174304692 -22890740 - MTB_Mm LTR MaLR -201 206 1 6 1914 192 339 167 18 chr1 174305157 174305271 -22890161 + MIRb SINE MIR 42 172 -96 6 1914 1180 68 0 0 chr1 174305905 174306051 -22889381 + B1_Mus2 SINE Alu 2 147 0 6 1914 27 29 0 0 chr1 174306786 174306820 -22888612 + GC_rich Low_complexity Low_complexity 1 34 0 6 1914 23 33 0 0 chr1 174309239 174309269 -22886163 + AT_rich Low_complexity Low_complexity 1 30 0 6 1914 189 94 0 0 chr1 174309304 174309336 -22886096 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1914 830 158 50 0 chr1 174309380 174309519 -22885913 - B1_Mus2 SINE Alu 0 147 2 6 1914 390 281 52 17 chr1 174309604 174309720 -22885712 - PB1D7 SINE Alu 0 120 1 6 1914 299 216 12 119 chr1 174309757 174309841 -22885591 + RSINE1 SINE B4 91 165 0 6 1914 502 252 70 8 chr1 174310004 174310132 -22885300 - B1F1 SINE Alu -1 148 13 6 1914 242 183 150 0 chr1 174311019 174311079 -22884353 - ID4_ SINE ID -14 69 1 6 1914 484 237 91 8 chr1 174311149 174311281 -22884151 - ID_B1 SINE B4 0 224 82 6 1914 1005 184 69 30 chr1 174311371 174311573 -22883859 - B3 SINE B2 -6 210 1 6 1914 463 291 42 7 chr1 174311693 174311835 -22883597 - RSINE1 SINE B4 -12 153 7 6 1914 5973 67 19 8 chr1 174312001 174312801 -22882631 + RLTR22_Mus LTR ERVK 3 811 -997 6 1914 1416 134 118 4 chr1 174313010 174313272 -22882160 + RLTR22_Mus LTR ERVK 1513 1804 -4 6 1914 236 356 76 0 chr1 174313474 174313606 -22881826 - ORR1E LTR MaLR -217 142 1 6 1914 669 217 20 61 chr1 174313775 174313922 -22881510 - ID_B1 SINE B4 -1 223 83 6 1914 216 67 0 0 chr1 174314261 174314291 -22881141 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1914 450 222 131 0 chr1 174314298 174314397 -22881035 - B4 SINE B4 -98 194 83 6 1914 427 279 116 14 chr1 174315023 174315161 -22880271 - B3 SINE B2 -56 160 9 6 1914 2011 143 143 31 chr1 174315229 174315648 -22879784 - RMER4A LTR ERVK 0 466 1 6 1914 339 272 135 62 chr1 174315762 174315804 -22879628 - L1MB4 LINE L1 -338 5842 5810 6 1914 180 0 0 0 chr1 174315804 174315824 -22879608 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1914 481 278 227 30 chr1 174315824 174316128 -22879304 - L1_Mur3 LINE L1 -107 5773 5410 6 1914 203 276 98 75 chr1 174316172 174316305 -22879127 + MIR SINE MIR 14 149 -113 6 1914 275 170 0 54 chr1 174316330 174316386 -22879046 + RLTR25B LTR ERVK 440 492 -536 6 1914 566 49 171 0 chr1 174316340 174316422 -22879010 + B1_Mus2 SINE Alu 47 142 -5 6 1914 373 103 29 0 chr1 174316424 174316492 -22878940 + (GAA)n Simple_repeat Simple_repeat 3 72 0 6 1914 588 161 25 82 chr1 174316496 174316618 -22878814 + PB1D9 SINE Alu 1 115 -5 6 1914 338 277 267 27 chr1 174316671 174317108 -22878324 + Lx5 LINE L1 5286 5798 -82 6 1914 201 222 48 0 chr1 174317128 174317191 -22878241 + (TATG)n Simple_repeat Simple_repeat 1 66 0 6 1914 963 112 7 7 chr1 174317275 174317410 -22878022 - B1_Mur3 SINE Alu -13 136 2 6 1914 671 102 41 0 chr1 174318219 174318317 -22877115 + ORR1B2 LTR MaLR 258 359 -8 6 1914 24 32 0 0 chr1 174318365 174318396 -22877036 + AT_rich Low_complexity Low_complexity 1 31 0 6 1914 1278 208 276 29 chr1 174318477 174318591 -22876841 + Lx5 LINE L1 6450 6510 -540 6 1914 2379 204 120 14 chr1 174318591 174319143 -22876289 - RMER19C LTR ERVK -1 610 1 6 1914 1278 235 26 36 chr1 174319143 174319379 -22876053 + Lx5 LINE L1 6511 6751 -299 6 1914 362 290 54 0 chr1 174319388 174319481 -22875951 + RSINE1 SINE B4 53 150 -15 6 1914 189 214 107 0 chr1 174319518 174319574 -22875858 - MIRc SINE MIR -162 106 45 6 1914 2595 265 24 47 chr1 174319984 174320889 -22874543 + Lx5 LINE L1 6194 7044 -6 6 1914 2316 123 73 3 chr1 174320918 174321286 -22874146 - ORR1B1 LTR MaLR 0 394 1 6 1914 366 23 0 0 chr1 174321295 174321338 -22874094 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1914 397 293 68 87 chr1 174321340 174321388 -22874044 - ID_B1 SINE B4 -20 204 3 6 1914 1165 101 0 0 chr1 174321388 174321546 -22873886 - B2_Mm2 SINE B2 -35 160 3 6 1914 332 315 33 0 chr1 174321584 174321676 -22873756 - ID_B1 SINE B4 -116 108 14 6 1914 425 349 42 42 chr1 174322202 174322513 -22872919 + L2 LINE L2 2535 2845 -574 6 1914 852 123 18 29 chr1 174322898 174323353 -22872079 + (TG)n Simple_repeat Simple_repeat 1 449 0 6 1914 200 139 0 27 chr1 174323449 174323486 -22871946 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 1914 197 0 0 67 chr1 174323527 174323557 -22871875 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1914 1175 101 39 0 chr1 174323586 174323765 -22871667 + B2_Mm2 SINE B2 1 186 -9 6 1914 248 284 82 93 chr1 174324782 174324879 -22870553 + Charlie4z DNA MER1_type 64 159 -8 6 1915 24 32 0 0 chr1 174325763 174325794 -22869638 + AT_rich Low_complexity Low_complexity 1 31 0 6 1915 246 188 0 0 chr1 174325794 174325842 -22869590 - Lx7 LINE L1 -19 7677 7630 6 1915 713 217 29 0 chr1 174325851 174325989 -22869443 - Lx7 LINE L1 -1061 6635 6494 6 1915 234 0 0 0 chr1 174326014 174326040 -22869392 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1915 1181 61 0 0 chr1 174326040 174326187 -22869245 - B1_Mus2 SINE Alu 0 147 1 6 1915 233 303 18 27 chr1 174326227 174326339 -22869093 - L1M LINE L1 -923 5377 5267 6 1915 453 241 9 31 chr1 174326338 174326468 -22868964 + L1_Mm LINE L1 5299 5485 -698 6 1915 470 253 33 20 chr1 174326653 174326806 -22868626 + L1_Mm LINE L1 5473 5627 -664 6 1915 238 276 17 62 chr1 174326820 174327060 -22868372 - RMER17A LTR ERVK -266 485 257 6 1915 459 276 13 19 chr1 174327609 174327764 -22867668 + Lx9 LINE L1 7307 7460 -184 6 1915 234 0 0 0 chr1 174327823 174327849 -22867583 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1915 733 275 58 18 chr1 174327850 174328076 -22867356 + B4A SINE B4 57 291 -1 6 1915 291 294 163 0 chr1 174328152 174328244 -22867188 + PB1D10 SINE Alu 1 107 -10 6 1915 298 258 0 93 chr1 174328310 174328412 -22867020 + ID4 SINE ID 8 101 -51 6 1915 1249 199 157 64 chr1 174328500 174328876 -22866556 + MTD LTR MaLR 1 411 -8 6 1915 438 313 137 0 chr1 174328928 174329161 -22866271 - L2 LINE L2 -777 2642 2378 6 1915 547 295 77 45 chr1 174329277 174329497 -22865935 + B4A SINE B4 1 227 -65 6 1915 445 245 50 224 chr1 174329499 174329678 -22865754 + RSINE1 SINE B4 2 149 -16 6 1915 295 105 0 34 chr1 174329685 174329744 -22865688 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1915 209 77 51 0 chr1 174330398 174330437 -22864995 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 6 1915 23 0 0 0 chr1 174330533 174330556 -22864876 + AT_rich Low_complexity Low_complexity 1 23 0 6 1915 240 163 0 0 chr1 174330629 174330672 -22864760 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 6 1915 1193 98 0 34 chr1 174330674 174330853 -22864579 - B2_Mm2 SINE B2 -22 173 1 6 1915 379 251 269 8 chr1 174331125 174331370 -22864062 - L1M5 LINE L1 -459 5665 5357 6 1915 1247 97 28 6 chr1 174331544 174331720 -22863712 + B2_Mm2 SINE B2 2 181 -14 6 1915 485 285 84 8 chr1 174331874 174332005 -22863427 - ID_B1 SINE B4 0 224 84 6 1915 1147 88 0 0 chr1 174332066 174332205 -22863227 + B1_Mus1 SINE Alu 1 139 -9 6 1915 368 0 0 41 chr1 174332205 174332254 -22863178 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1915 801 131 114 8 chr1 174332388 174332519 -22862913 + B1_Mur1 SINE Alu 5 149 0 6 1915 298 333 9 0 chr1 174332560 174332671 -22862761 + (TATG)n Simple_repeat Simple_repeat 4 115 0 6 1915 2227 148 103 5 chr1 174332671 174333051 -22862381 - MTC LTR MaLR 0 421 5 6 1915 758 264 150 4 chr1 174333056 174333296 -22862136 - B4A SINE B4 -17 275 1 6 1915 242 322 141 30 chr1 174333325 174333559 -22861873 + MER102a DNA MER1_type 71 330 0 6 1915 676 304 128 44 chr1 174334284 174334759 -22860673 + MLT2B1 LTR ERVL 5 519 -1 6 1915 571 257 48 7 chr1 174334823 174334968 -22860464 - RSINE1 SINE B4 -11 154 4 6 1915 734 229 14 0 chr1 174335049 174335189 -22860243 - B1_Mur1 SINE Alu -6 143 2 6 1915 25 0 0 0 chr1 174335190 174335215 -22860217 + AT_rich Low_complexity Low_complexity 1 25 0 6 1915 195 93 0 107 chr1 174336059 174336143 -22859289 + (CACCC)n Simple_repeat Simple_repeat 5 79 0 7 1915 201 336 53 35 chr1 174336783 174336897 -22858535 + L3 LINE CR1 4369 4484 -5 7 1915 540 0 0 0 chr1 174336924 174336984 -22858448 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1915 388 294 77 52 chr1 174337202 174337396 -22858036 + LTR84b LTR ERVL 64 262 -499 7 1915 185 329 25 0 chr1 174338096 174338175 -22857257 + MIR SINE MIR 114 194 -68 7 1915 276 360 59 43 chr1 174338240 174338562 -22856870 - LTR84b LTR ERVL -434 327 1 7 1915 237 139 0 0 chr1 174338610 174338653 -22856779 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1915 351 0 0 0 chr1 174338888 174338927 -22856505 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1915 540 45 0 0 chr1 174339864 174339931 -22855501 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 7 1915 773 79 31 0 chr1 174339931 174340058 -22855374 + (TCCC)n Simple_repeat Simple_repeat 4 134 0 7 1915 576 0 0 0 chr1 174340068 174340132 -22855300 + (TTTC)n Simple_repeat Simple_repeat 4 67 0 7 1915 304 248 6 15 chr1 174340829 174340903 -22854529 - PB1D10 SINE Alu -27 93 17 7 1915 2179 116 55 30 chr1 174341984 174342384 -22853048 - RMER17C LTR ERVK 0 410 1 7 1915 190 0 67 0 chr1 174342973 174343003 -22852429 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1915 293 274 179 21 chr1 174343718 174343953 -22851479 - L2c LINE L2 -41 3346 3075 7 1915 1663 207 53 15 chr1 174344038 174344422 -22851010 + MTD LTR MaLR 15 405 -14 7 1915 540 274 46 0 chr1 174344654 174344807 -22850625 + B4 SINE B4 2 161 -131 7 1915 282 167 0 0 chr1 174344990 174345050 -22850382 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1915 236 206 0 9 chr1 174345267 174345328 -22850104 - B1_Mus2 SINE Alu -10 137 49 7 1915 196 282 86 58 chr1 174345409 174345548 -22849884 + MIR3 SINE MIR 1 143 -65 7 1915 22 0 0 0 chr1 174346160 174346182 -22849250 + GC_rich Low_complexity Low_complexity 1 22 0 7 1915 260 272 74 31 chr1 174347483 174347646 -22847786 - L1ME4a LINE L1 -3 6121 5952 7 1915 502 220 42 8 chr1 174347924 174348043 -22847389 + B3A SINE B2 1 123 -75 7 1915 475 225 80 68 chr1 174348945 174349107 -22846325 - RSINE1 SINE B4 0 165 2 7 1915 370 230 20 0 chr1 174349147 174349247 -22846185 - Lx6 LINE L1 -1 7459 7358 7 1915 549 200 93 31 chr1 174349290 174349419 -22846013 - Lx7 LINE L1 0 7696 7560 7 1915 521 224 87 46 chr1 174349422 174349595 -22845837 + B2_Mm2 SINE B2 2 181 -14 7 1915 918 125 0 0 chr1 174349599 174349743 -22845689 + (GAAA)n Simple_repeat Simple_repeat 2 145 0 7 1915 5803 206 58 63 chr1 174349761 174349777 -22845655 - Lx7 LINE L1 -122 7574 7559 7 1915 817 169 0 40 chr1 174349777 174349916 -22845516 + B1_Mus2 SINE Alu 5 138 -9 7 1915 276 53 0 0 chr1 174349916 174349954 -22845478 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1915 5803 206 58 63 chr1 174349962 174351346 -22844086 - Lx7 LINE L1 -138 7558 6181 7 1915 11791 133 98 95 chr1 174351338 174353028 -22842404 - L1_Mur3 LINE L1 -1081 4799 3064 7 1915 1142 112 6 0 chr1 174353028 174353206 -22842226 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 7 1915 11791 133 98 95 chr1 174353206 174353415 -22842017 - L1_Mur3 LINE L1 -2817 3063 2913 7 1915 1671 214 58 66 chr1 174353415 174353900 -22841532 - RLTR28B LTR ERVL 0 481 1 7 1915 11791 133 98 95 chr1 174353900 174354124 -22841308 - L1_Mur3 LINE L1 -2968 2912 2542 7 1915 279 0 0 0 chr1 174354124 174354155 -22841277 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1915 293 212 0 0 chr1 174354155 174354221 -22841211 - RLTR20D LTR ERVK -105 463 398 7 1915 464 189 11 11 chr1 174354197 174354288 -22841144 - RLTR20D LTR ERVK -282 286 196 7 1915 11791 133 98 95 chr1 174354221 174354703 -22840729 - L1_Mur3 LINE L1 -3339 2541 2118 7 1915 1324 179 101 68 chr1 174354698 174355123 -22840309 - L1_Mur3 LINE L1 -6977 751 313 7 1915 719 271 86 63 chr1 174355367 174355718 -22839714 - ORR1E LTR MaLR 0 359 1 7 1915 267 152 0 0 chr1 174355724 174355770 -22839662 + CT-rich Low_complexity Low_complexity 1 46 0 7 1915 1276 118 38 0 chr1 174355770 174355956 -22839476 - B2_Mm2 SINE B2 -2 193 1 7 1915 1400 65 22 0 chr1 174356106 174356290 -22839142 + B2_Mm2 SINE B2 2 189 -6 7 1915 300 111 0 0 chr1 174356562 174356616 -22838816 + (A)n Simple_repeat Simple_repeat 1 54 0 7 1915 1970 157 61 65 chr1 174356676 174357119 -22838313 + RMER10A LTR ERVL 1 441 -1 7 1915 461 140 157 9 chr1 174357203 174357311 -22838121 + MTB_Mm LTR MaLR 295 418 -1 7 1915 539 122 41 0 chr1 174357312 174357410 -22838022 + MTB_Mm-int LTR MaLR 3 104 -1154 7 1915 464 110 12 0 chr1 174357415 174357497 -22837935 + B2_Mm1t SINE B2 110 192 -1 7 1915 5546 148 63 36 chr1 174357506 174357634 -22837798 + MTB_Mm-int LTR MaLR 93 217 -1041 7 1915 1484 52 16 10 chr1 174357634 174357827 -22837605 + B2_Mm2 SINE B2 2 195 0 7 1915 5546 148 63 36 chr1 174357827 174358833 -22836599 + MTB_Mm-int LTR MaLR 218 1258 0 7 1915 2541 146 25 0 chr1 174358833 174359230 -22836202 + MTB_Mm LTR MaLR 1 407 0 7 1915 290 222 0 27 chr1 174359789 174359863 -22835569 + RLTR42-int LTR ERVK 896 967 -5170 7 1915 367 246 136 76 chr1 174359876 174360127 -22835305 + RLTR42-int LTR ERVK 1529 1794 -3728 7 1915 333 0 0 0 chr1 174360374 174360411 -22835021 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1915 734 176 88 56 chr1 174360537 174360753 -22834679 + RLTR42-int LTR ERVK 1870 2092 -3430 7 1915 770 267 95 92 chr1 174360769 174361381 -22834051 + MYSERV6-int LTR ERVK 7170 7504 -1455 7 1915 354 262 111 123 chr1 174361551 174362168 -22833264 + MYSERV6-int LTR ERVK 3754 4048 -2089 7 1915 1679 200 86 36 chr1 174362301 174362721 -22832711 + RMER10A LTR ERVL 1 441 -1 7 1915 582 310 32 0 chr1 174362897 174363052 -22832380 + RSINE1 SINE B4 2 161 -4 7 1915 1196 283 45 32 chr1 174363313 174363715 -22831717 + Tigger7 DNA MER2_type 1 407 -2084 7 1915 526 211 116 0 chr1 174363703 174363850 -22831582 + Tigger7 DNA MER2_type 2222 2385 -106 7 1915 421 240 58 0 chr1 174364260 174364364 -22831068 + PB1D10 SINE Alu 7 116 -1 7 1915 483 310 66 14 chr1 174364568 174364781 -22830651 + MER89 LTR ERV1 166 389 -170 7 1915 277 331 53 117 chr1 174364932 174365120 -22830312 - MLT1A0 LTR MaLR -232 176 1 7 1915 241 219 46 111 chr1 174365144 174365252 -22830180 + MER89 LTR ERV1 418 518 -41 7 1915 1649 141 117 26 chr1 174365254 174365604 -22829828 + ORR1B1 LTR MaLR 5 386 -8 7 1915 619 251 36 33 chr1 174365805 174366216 -22829216 - L1MD LINE L1 -2042 4104 3671 7 1915 550 284 13 0 chr1 174366674 174366829 -22828603 - RSINE1 SINE B4 -4 161 5 7 1915 808 134 73 15 chr1 174367380 174367516 -22827916 + B1_Mur4 SINE Alu 1 144 -6 7 1915 256 292 111 0 chr1 174367538 174367610 -22827822 - ID2 SINE ID -2 81 2 7 1915 410 310 0 8 chr1 174367619 174367736 -22827696 - PB1D10 SINE Alu 0 117 2 7 1915 601 261 19 6 chr1 174367736 174367894 -22827538 - MTC LTR MaLR -58 363 204 7 1915 202 137 0 73 chr1 174367961 174368016 -22827416 + C-rich Low_complexity Low_complexity 1 51 0 7 1915 261 324 18 9 chr1 174368019 174368131 -22827301 + CT-rich Low_complexity Low_complexity 3 115 0 7 1915 269 329 25 0 chr1 174368144 174368223 -22827209 - PB1D10 SINE Alu -31 86 6 7 1915 906 141 77 15 chr1 174368368 174368563 -22826869 - MTD LTR MaLR -205 214 8 7 1915 1238 71 6 0 chr1 174368570 174368740 -22826692 + (TCTA)n Simple_repeat Simple_repeat 2 172 0 7 1915 742 242 134 12 chr1 174368793 174369040 -22826392 - B4A SINE B4 -8 284 8 7 1915 928 272 9 5 chr1 174369050 174369268 -22826164 - B4A SINE B4 -73 219 1 7 1915 206 183 78 62 chr1 174369361 174369425 -22826007 + MIRb SINE MIR 193 257 -11 7 1915 216 0 0 0 chr1 174369478 174369502 -22825930 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 7 1915 962 130 0 0 chr1 174369502 174369640 -22825792 - B1_Mur4 SINE Alu -10 140 3 7 1915 535 288 103 29 chr1 174369676 174369919 -22825513 + MTE-int LTR MaLR 329 589 -991 7 1915 924 247 64 57 chr1 174370001 174370315 -22825117 - MTE2b LTR MaLR -38 341 26 7 1915 292 305 0 0 chr1 174370304 174370386 -22825046 - MTC LTR MaLR -297 82 1 7 1915 631 246 32 16 chr1 174370423 174370609 -22824823 + ERVL-int LTR ERVL 5562 5750 -7 7 1915 1169 208 174 16 chr1 174370700 174370906 -22824526 + MTD LTR MaLR 1 217 -202 7 1915 195 100 0 0 chr1 174370906 174370936 -22824496 + (TGAG)n Simple_repeat Simple_repeat 4 33 0 7 1915 1169 208 174 16 chr1 174370936 174371051 -22824381 + MTD LTR MaLR 218 373 -46 7 1915 272 278 39 102 chr1 174371082 174371210 -22824222 + MTEa LTR MaLR 98 217 -162 7 1915 288 301 198 52 chr1 174371601 174371920 -22823512 + MER21B LTR ERV1 102 467 -396 7 1915 517 299 21 0 chr1 174372845 174372989 -22822443 + B1F SINE Alu 1 147 -2 7 1915 265 281 147 28 chr1 174373569 174373712 -22821720 - MamRep137 DNA TcMar? -146 298 139 7 1915 423 309 151 67 chr1 174373799 174374264 -22821168 - MLT1E1 LTR MaLR 0 654 151 7 1915 913 152 0 14 chr1 174374969 174375116 -22820316 + B1_Mus2 SINE Alu 1 145 -2 7 1915 216 0 0 0 chr1 174375116 174375140 -22820292 + (CACAA)n Simple_repeat Simple_repeat 2 25 0 7 1915 767 267 44 6 chr1 174375458 174375688 -22819744 + ID_B1 SINE B4 12 248 -44 7 1915 289 136 88 29 chr1 174375821 174375889 -22819543 - Ricksha_c DNA MuDR -1143 905 834 7 1915 1576 205 61 89 chr1 174375897 174376422 -22819010 - Lx9 LINE L1 -1 7643 7134 7 1915 362 346 31 12 chr1 174376440 174376601 -22818831 - MLT2B5 LTR ERVL -85 469 306 7 1915 1475 55 38 0 chr1 174376666 174376849 -22818583 + B2_Mm1a SINE B2 1 190 -3 7 1915 261 237 0 0 chr1 174376881 174376940 -22818492 + MTEb LTR MaLR 20 78 -301 7 1915 195 139 0 0 chr1 174376964 174377000 -22818432 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1915 1095 88 0 13 chr1 174377001 174377150 -22818282 - B1_Mus1 SINE Alu -1 147 1 7 1915 440 331 13 13 chr1 174377182 174377341 -22818091 - MLT2B5 LTR ERVL -368 233 75 7 1915 428 289 0 0 chr1 174377378 174377492 -22817940 - MER33 DNA MER1_type -202 122 9 7 1915 363 217 14 0 chr1 174377507 174377576 -22817856 + ID SINE ID 2 71 -153 7 1915 732 249 39 15 chr1 174377757 174377961 -22817471 - MLT1D LTR MaLR -291 214 6 7 1915 1321 82 33 0 chr1 174378596 174378778 -22816654 + B2_Mm2 SINE B2 2 189 -6 7 1915 662 278 89 27 chr1 174379414 174379706 -22815726 + MLT1B LTR MaLR 57 366 -24 7 1915 3219 53 5 17 chr1 174379712 174380117 -22815315 + MTB LTR MaLR 1 400 0 7 1915 198 0 0 0 chr1 174380145 174380167 -22815265 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1915 659 86 113 38 chr1 174380741 174380952 -22814480 - L1_Mus3 LINE L1 0 6636 6478 7 1915 1248 53 0 0 chr1 174380954 174381104 -22814328 - L1_Mus3 LINE L1 -341 6297 6148 7 1915 255 299 93 9 chr1 174381111 174381219 -22814213 - LTR16B1 LTR ERVL -300 180 64 7 1915 871 288 68 9 chr1 174381555 174381645 -22813787 - MLT1B LTR MaLR -42 348 246 7 1915 504 0 0 0 chr1 174381645 174381701 -22813731 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1915 871 288 68 9 chr1 174381701 174381932 -22813500 - MLT1B LTR MaLR -145 245 9 7 1915 216 158 0 0 chr1 174382046 174382084 -22813348 + (TGG)n Simple_repeat Simple_repeat 1 38 0 8 1915 351 284 10 69 chr1 174382084 174382186 -22813246 - RSINE1 SINE B4 -13 152 57 8 1915 568 159 0 0 chr1 174382395 174382483 -22812949 + (TCTCTG)n Simple_repeat Simple_repeat 1 88 0 8 1915 424 270 71 21 chr1 174382483 174382623 -22812809 - ID_B1 SINE B4 -77 147 1 8 1915 838 276 25 0 chr1 174383482 174383678 -22811754 + ID_B1 SINE B4 3 203 -21 8 1915 383 162 12 0 chr1 174383679 174383759 -22811673 + GA-rich Low_complexity Low_complexity 2 82 0 8 1915 715 169 105 70 chr1 174383768 174383953 -22811479 - MLT1B LTR MaLR -64 326 133 8 1915 2061 166 76 15 chr1 174383953 174384350 -22811082 - MTC LTR MaLR 0 421 1 8 1915 715 169 105 70 chr1 174384350 174384393 -22811039 - MLT1B LTR MaLR -258 132 90 8 1915 181 0 33 33 chr1 174385242 174385272 -22810160 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1915 564 15 0 0 chr1 174385380 174385445 -22809987 + (CCA)n Simple_repeat Simple_repeat 3 67 0 8 1915 21 0 0 0 chr1 174385534 174385555 -22809877 + AT_rich Low_complexity Low_complexity 1 21 0 8 1915 369 0 0 0 chr1 174386725 174386766 -22808666 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 1915 22 56 0 0 chr1 174386839 174386875 -22808557 + AT_rich Low_complexity Low_complexity 1 36 0 8 1915 1151 62 7 0 chr1 174387076 174387222 -22808210 - B1_Mus1 SINE Alu 0 148 2 8 1915 244 90 112 25 chr1 174387262 174387342 -22808090 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 8 1915 1281 201 142 35 chr1 174387342 174387709 -22807723 + MTD LTR MaLR 2 407 -12 8 1915 1157 68 0 14 chr1 174389028 174389176 -22806256 + B1_Mus2 SINE Alu 1 146 -1 8 1915 565 237 8 4 chr1 174390740 174390988 -22804444 + (TG)n Simple_repeat Simple_repeat 1 249 0 8 1915 1179 75 0 7 chr1 174391518 174391666 -22803766 - B1_Mus2 SINE Alu 0 147 1 8 1915 277 323 122 125 chr1 174391711 174391998 -22803434 + MER77 LTR ERVL 53 338 -269 8 1915 302 327 43 68 chr1 174392052 174392213 -22803219 + MER68 LTR ERVL 403 559 -4 8 1915 207 125 0 0 chr1 174392243 174392283 -22803149 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1915 441 0 0 0 chr1 174393219 174393268 -22802164 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1915 1138 58 0 0 chr1 174393268 174393406 -22802026 - B1_Mus1 SINE Alu -10 138 1 8 1915 22 0 0 0 chr1 174393843 174393865 -22801567 + AT_rich Low_complexity Low_complexity 1 22 0 8 1915 232 353 85 57 chr1 174394367 174394544 -22800888 + L2b LINE L2 3190 3371 -4 8 1915 1295 299 70 17 chr1 174394886 174395400 -22800032 + L1MA4 LINE L1 5337 5927 -373 8 1915 186 71 0 0 chr1 174395419 174395447 -22799985 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1915 206 121 0 29 chr1 174395924 174395941 -22799491 + polypyrimidine Low_complexity Low_complexity 18 34 0 8 1915 1619 31 5 5 chr1 174395941 174396134 -22799298 - B2_Mm1a SINE B2 0 193 1 8 1915 206 121 0 29 chr1 174396134 174396150 -22799282 + polypyrimidine Low_complexity Low_complexity 2 17 0 8 1915 189 0 0 0 chr1 174397676 174397697 -22797735 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1915 3534 106 46 31 chr1 174397826 174398408 -22797024 + MT2B LTR ERVL 1 591 -10 8 1915 333 0 0 0 chr1 174399187 174399224 -22796208 + (CCCA)n Simple_repeat Simple_repeat 4 40 0 8 1915 1356 76 43 0 chr1 174399344 174399528 -22795904 + B2_Mm1t SINE B2 2 193 0 8 1915 270 356 103 71 chr1 174400215 174400554 -22794878 + LTR78 LTR ERV1 751 1100 -204 8 1915 588 29 0 0 chr1 174400620 174400690 -22794742 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1915 271 350 85 79 chr1 174400902 174401231 -22794201 + LTR16B1 LTR ERVL 1 331 -149 8 1915 639 293 42 25 chr1 174401405 174401420 -22794012 - L1MA4 LINE L1 -36 6276 6263 8 1915 932 134 253 11 chr1 174401420 174401594 -22793838 + B3 SINE B2 1 216 0 8 1915 900 238 21 19 chr1 174401594 174401861 -22793571 - L1MA4 LINE L1 -50 6262 5989 8 1915 2961 40 3 5 chr1 174401863 174402244 -22793188 + MTA_Mm LTR MaLR 1 380 -16 8 1915 343 59 59 0 chr1 174402251 174402302 -22793130 - MTA_Mm LTR MaLR -342 54 1 8 1915 918 92 0 0 chr1 174402302 174402432 -22793000 + (TTCC)n Simple_repeat Simple_repeat 1 130 0 8 1915 715 275 5 45 chr1 174402453 174402651 -22792781 - B3A SINE B2 -7 191 2 8 1915 1127 256 29 29 chr1 174402869 174403219 -22792213 - L1MA4 LINE L1 -412 5888 5539 8 1915 246 194 27 40 chr1 174403232 174403307 -22792125 - MTE2a LTR MaLR -2 377 304 8 1915 279 113 0 0 chr1 174403307 174403360 -22792072 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1915 576 261 34 139 chr1 174403466 174403733 -22791699 - MTE2a LTR MaLR -139 240 2 8 1915 573 231 0 8 chr1 174403934 174404052 -22791380 - PB1D9 SINE Alu -2 118 2 8 1915 256 329 0 3 chr1 174405798 174405912 -22789520 - L1_Mur3 LINE L1 -580 5720 5573 8 1915 31 0 0 0 chr1 174407211 174407242 -22788190 + AT_rich Low_complexity Low_complexity 1 31 0 8 1915 1389 97 16 0 chr1 174407695 174407880 -22787552 - B2_Mm2 SINE B2 -3 192 5 8 1915 1911 108 0 7 chr1 174408721 174409002 -22786430 - Lx LINE L1 0 6654 6376 8 1915 852 165 7 15 chr1 174409388 174409523 -22785909 + B1_Mus2 SINE Alu 1 134 -13 8 1915 821 139 0 7 chr1 174410805 174410943 -22784489 + ORR1B2 LTR MaLR 231 367 0 8 1915 280 369 62 31 chr1 174411410 174411603 -22783829 + MIRb SINE MIR 52 250 -18 8 1915 192 304 71 0 chr1 174416886 174416942 -22778490 + MIR SINE MIR 167 226 -36 8 1915 295 300 182 25 chr1 174418704 174418904 -22776528 - MIRm SINE MIR -35 233 7 8 1915 206 266 34 34 chr1 174420089 174420178 -22775254 - MIR SINE MIR -93 169 94 8 1915 228 35 0 0 chr1 174421166 174421195 -22774237 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1915 501 17 0 0 chr1 174428852 174428910 -22766522 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1915 22 0 0 0 chr1 174431197 174431219 -22764213 + GC_rich Low_complexity Low_complexity 1 22 0 8 1915 270 0 0 0 chr1 174431749 174431779 -22763653 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1915 273 82 48 16 chr1 174434182 174434244 -22761188 + (GGGTG)n Simple_repeat Simple_repeat 3 66 0 8 1915 376 315 210 11 chr1 174434260 174434536 -22760896 - MLT1D LTR MaLR -154 351 21 8 1915 187 241 56 0 chr1 174435613 174435667 -22759765 + L3b LINE CR1 195 251 -231 8 1915 207 0 0 0 chr1 174436528 174436551 -22758881 + (TGG)n Simple_repeat Simple_repeat 2 24 0 8 1915 519 17 0 0 chr1 174436999 174437059 -22758373 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1915 201 133 0 0 chr1 174438368 174438398 -22757034 - MIRm SINE MIR -24 252 223 8 1915 186 43 0 0 chr1 174439355 174439378 -22756054 + (TTAG)n Simple_repeat Simple_repeat 3 25 0 8 1915 1995 194 25 20 chr1 174439380 174439780 -22755652 + MTD LTR MaLR 18 419 0 8 1915 577 281 214 13 chr1 174440028 174440331 -22755101 + L2a LINE L2 3062 3425 -1 8 1915 203 236 0 0 chr1 174440655 174440710 -22754722 + G-rich Low_complexity Low_complexity 6 60 0 8 1915 570 190 0 0 chr1 174442325 174442446 -22752986 + (CAT)n Simple_repeat Simple_repeat 1 121 0 8 1915 301 258 146 0 chr1 174442723 174442812 -22752620 - B1F1 SINE Alu -15 105 4 8 1915 240 111 0 0 chr1 174444938 174444983 -22750449 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1915 421 333 65 18 chr1 174446118 174446286 -22749146 - Arthur1 DNA Tip100 -7 3940 3765 8 1915 1517 302 101 14 chr1 174446340 174447042 -22748390 - Arthur1 DNA Tip100 -282 3665 2903 8 1915 1231 105 5 21 chr1 174447236 174447430 -22748002 - B2_Mm2 SINE B2 -4 191 1 8 1915 1944 213 123 26 chr1 174447536 174448041 -22747391 + Lx7 LINE L1 6912 7465 -231 8 1915 22 0 0 0 chr1 174448181 174448203 -22747229 + AT_rich Low_complexity Low_complexity 1 22 0 8 1915 836 222 11 0 chr1 174448254 174448430 -22747002 + B3 SINE B2 39 216 0 8 1915 585 266 143 9 chr1 174448537 174448876 -22746556 + MLT1D LTR MaLR 31 505 0 8 1915 310 274 10 10 chr1 174449001 174449097 -22746335 - Arthur1 DNA Tip100 -3263 684 589 8 1915 344 321 27 0 chr1 174449117 174449229 -22746203 + (TG)n Simple_repeat Simple_repeat 2 116 0 8 1915 700 340 14 38 chr1 174449240 174449530 -22745902 - B4A SINE B4 -4 288 6 8 1915 569 346 58 40 chr1 174449532 174449857 -22745575 - Arthur1 DNA Tip100 -3351 596 266 8 1915 219 69 0 0 chr1 174450248 174450277 -22745155 + (TGG)n Simple_repeat Simple_repeat 2 30 0 8 1915 423 0 0 0 chr1 174451665 174451712 -22743720 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 8 1915 369 0 0 0 chr1 174452105 174452146 -22743286 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1915 216 0 0 0 chr1 174452146 174452169 -22743263 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1915 22 0 0 0 chr1 174453188 174453210 -22742222 + AT_rich Low_complexity Low_complexity 1 22 0 8 1915 1264 80 23 0 chr1 174453226 174453402 -22742030 - B2_Mm2 SINE B2 -14 181 2 8 1915 234 308 25 13 chr1 174453425 174453504 -22741928 - B4A SINE B4 -207 85 6 8 1915 3411 157 181 23 chr1 174453533 174454363 -22741069 + RMER19B LTR ERVK 2 890 -12 8 1915 1259 97 17 0 chr1 174454532 174454708 -22740724 + B2_Mm2 SINE B2 2 180 -15 8 1915 1042 100 118 0 chr1 174454708 174454878 -22740554 + B2_Mm1t SINE B2 1 190 -3 8 1915 209 323 31 0 chr1 174455604 174455669 -22739763 - L2c LINE L2 -42 3345 3279 8 1915 216 0 0 0 chr1 174455920 174455944 -22739488 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1915 283 336 75 8 chr1 174456080 174456200 -22739232 - L3b LINE CR1 -219 263 136 8 1916 1272 42 0 0 chr1 174458448 174458615 -22736817 + (GA)n Simple_repeat Simple_repeat 1 167 0 8 1916 268 333 31 0 chr1 174459286 174459382 -22736050 - PB1D10 SINE Alu -17 100 2 8 1916 195 42 0 0 chr1 174459455 174459479 -22735953 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1916 258 152 0 0 chr1 174460449 174460508 -22734924 + CT-rich Low_complexity Low_complexity 1 59 0 8 1916 252 255 124 29 chr1 174461380 174461485 -22733947 + AmnSINE1 SINE SINE 362 476 -99 9 1916 726 188 225 11 chr1 174463689 174463867 -22731565 + B3 SINE B2 1 216 0 9 1916 189 0 0 0 chr1 174465984 174466005 -22729427 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 1916 342 329 53 30 chr1 174466249 174466418 -22729014 - B4A SINE B4 -118 174 2 9 1916 741 309 19 8 chr1 174466878 174467145 -22728287 - L1MA6 LINE L1 0 6300 6031 9 1916 1324 89 0 25 chr1 174468263 174468459 -22726973 - B2_Mm2 SINE B2 -4 191 1 9 1916 241 305 9 19 chr1 174469697 174469804 -22725628 + GA-rich Low_complexity Low_complexity 3 108 0 9 1916 204 374 66 40 chr1 174470921 174471194 -22724238 + L3b LINE CR1 195 474 -8 9 1916 199 217 66 16 chr1 174471717 174471778 -22723654 + L3b LINE CR1 49 112 -370 9 1916 198 330 136 0 chr1 174473146 174473249 -22722183 - MER5B DNA MER1_type -48 130 14 9 1916 1256 238 50 98 chr1 174473442 174473820 -22721612 - MTEb LTR MaLR -12 367 8 9 1916 848 230 39 10 chr1 174474770 174474811 -22720621 + B3 SINE B2 1 42 -174 9 1916 341 22 22 0 chr1 174474811 174474857 -22720575 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 1916 848 230 39 10 chr1 174474857 174475021 -22720411 + B3 SINE B2 43 211 -5 9 1916 1422 0 0 0 chr1 174476784 174476942 -22718490 + (TCCC)n Simple_repeat Simple_repeat 4 161 0 9 1916 630 0 0 0 chr1 174476942 174477011 -22718421 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 9 1916 1164 15 0 0 chr1 174477012 174477147 -22718285 - B1_Mus1 SINE Alu -13 135 1 9 1916 787 156 167 38 chr1 174478056 174478242 -22717190 + B3 SINE B2 1 210 -6 9 1916 182 245 41 0 chr1 174478398 174478447 -22716985 - L3 LINE CR1 -1096 3393 3343 9 1916 268 317 12 0 chr1 174478594 174478676 -22716756 - ID4_ SINE ID 0 83 1 9 1916 309 26 0 0 chr1 174479073 174479111 -22716321 + (CTGGGG)n Simple_repeat Simple_repeat 3 40 0 9 1916 709 222 0 0 chr1 174479241 174479385 -22716047 - B1_Mur2 SINE Alu -5 144 1 9 1916 486 0 0 0 chr1 174481551 174481605 -22713827 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 1916 468 0 0 0 chr1 174482995 174483047 -22712385 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1916 477 0 0 0 chr1 174483756 174483809 -22711623 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1916 218 301 105 0 chr1 174484427 174484551 -22710881 + MIRc SINE MIR 30 169 -99 9 1916 312 120 0 0 chr1 174487145 174487195 -22708237 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1916 279 0 0 0 chr1 174488508 174488539 -22706893 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1916 570 95 0 0 chr1 174489141 174489236 -22706196 + (CA)n Simple_repeat Simple_repeat 1 95 0 9 1916 217 250 53 0 chr1 174489305 174489330 -22706102 + (CATATA)n Simple_repeat Simple_repeat 1 26 0 9 1916 261 0 0 0 chr1 174489330 174489359 -22706073 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 1916 217 250 53 0 chr1 174489359 174489409 -22706023 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 9 1916 471 95 0 0 chr1 174489558 174489632 -22705800 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1916 280 215 33 60 chr1 174490180 174490312 -22705120 - MIRm SINE MIR -57 211 84 9 1916 213 318 162 25 chr1 174491074 174491271 -22704161 + MIRc SINE MIR 3 226 -42 9 1916 256 290 102 31 chr1 174491289 174491417 -22704015 - MIR3 SINE MIR -1 207 71 9 1916 233 283 0 0 chr1 174492179 174492271 -22703161 + (CGG)n Simple_repeat Simple_repeat 3 94 0 9 1916 282 110 45 0 chr1 174492539 174492597 -22702835 + L2c LINE L2 3239 3328 -59 9 1916 234 259 34 80 chr1 174493965 174494053 -22701379 - MIR3 SINE MIR -16 192 109 9 1916 246 311 46 46 chr1 174494525 174494633 -22700799 - L3 LINE CR1 -52 4437 4330 9 1916 204 125 0 0 chr1 174496032 174496064 -22699368 + (GACTG)n Simple_repeat Simple_repeat 5 36 0 9 1916 705 308 70 22 chr1 174496070 174496382 -22699050 - MER63B DNA AcHobo -49 387 61 9 1916 1090 136 43 0 chr1 174496998 174497182 -22698250 + B2_Mm2 SINE B2 1 192 -3 9 1916 260 145 29 0 chr1 174497448 174497517 -22697915 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 9 1916 315 326 192 24 chr1 174499583 174499995 -22695437 + L2 LINE L2 2320 2800 -619 9 1916 193 349 45 45 chr1 174500383 174500494 -22694938 + L2a LINE L2 3267 3377 -49 1 1916 619 248 6 69 chr1 174500503 174500663 -22694769 + RSINE1 SINE B4 16 165 0 2 1916 201 361 16 47 chr1 174502850 174502978 -22692454 + L2 LINE L2 2459 2582 -837 3 1916 314 369 135 11 chr1 174503033 174503315 -22692117 + L2 LINE L2 2683 2999 -420 3 1916 257 219 30 30 chr1 174503901 174503967 -22691465 - Charlie10 DNA MER1_type -2716 106 41 4 1916 823 277 148 13 chr1 174504001 174504305 -22691127 + Lx8 LINE L1 7054 7398 -75 5 1916 720 0 0 0 chr1 174504467 174504547 -22690885 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1916 272 324 53 71 chr1 174504732 174504845 -22690587 - MER115 DNA Tip100 -466 227 117 7 1916 3784 182 74 48 chr1 174505125 174506006 -22689426 + RMER13B LTR ERVK 1 904 -4 8 1916 659 144 19 31 chr1 174506182 174506440 -22688992 + (TG)n Simple_repeat Simple_repeat 1 255 0 9 1916 480 81 0 0 chr1 174508178 174508252 -22687180 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1 1916 356 293 34 113 chr1 174508677 174508881 -22686551 - L3 LINE CR1 -307 4182 3995 1 1916 733 224 0 0 chr1 174509279 174509413 -22686019 - B1F SINE Alu -15 134 1 1 1916 992 86 18 6 chr1 174509833 174509996 -22685436 + (TTCC)n Simple_repeat Simple_repeat 3 167 0 1 1916 312 118 265 0 chr1 174509996 174510064 -22685368 - BC1_Mm scRNA scRNA -60 92 7 1 1916 355 286 28 95 chr1 174510057 174510089 -22685343 - ID_B1 SINE B4 -46 246 143 1 1916 468 254 53 15 chr1 174510089 174510221 -22685211 - B1F1 SINE Alu -6 143 7 1 1916 355 286 28 95 chr1 174510221 174510238 -22685194 - ID_B1 SINE B4 -46 142 80 1 1916 243 0 0 0 chr1 174511221 174511248 -22684184 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1916 292 304 128 21 chr1 174511309 174511450 -22683982 + MLT1G3 LTR MaLR 14 169 -426 1 1916 1381 86 16 21 chr1 174511499 174511689 -22683743 - B2_Mm2 SINE B2 -6 189 1 1 1916 811 240 78 52 chr1 174512953 174513261 -22682171 + L1MB8 LINE L1 5851 6166 -12 2 1916 219 228 149 82 chr1 174513967 174514101 -22681331 - L2c LINE L2 -222 3165 3023 2 1916 292 304 141 0 chr1 174515078 174515170 -22680262 - PB1D10 SINE Alu -2 115 11 2 1916 1350 150 35 35 chr1 174515244 174515499 -22679933 + Lx5 LINE L1 6796 7050 0 2 1916 274 206 87 52 chr1 174515681 174515793 -22679639 - L2c LINE L2 -89 3337 3219 2 1916 924 250 32 54 chr1 174516101 174516380 -22679052 + MamRep434 DNA TcMar 94 366 -60 2 1916 322 366 37 0 chr1 174516492 174516626 -22678806 + MER91A DNA Tip100 1 139 -57 2 1916 313 312 92 7 chr1 174516938 174517080 -22678352 + HAL1-3A_ME LINE L1 2285 2438 -420 2 1916 216 135 0 0 chr1 174517089 174517126 -22678306 + (AGGGGG)n Simple_repeat Simple_repeat 3 39 0 2 1916 523 207 0 11 chr1 174517274 174517362 -22678070 - B1F1 SINE Alu -57 92 6 2 1916 292 261 102 94 chr1 174517306 174517433 -22677999 + YREP_Mm Unknown Unknown 257 384 -1428 3 1916 197 225 0 174 chr1 174518675 174518761 -22676671 - L2b LINE L2 -260 3115 3045 3 1916 231 250 0 0 chr1 174518761 174518825 -22676607 + G-rich Low_complexity Low_complexity 1 64 0 3 1916 225 0 0 0 chr1 174519081 174519106 -22676326 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1916 477 0 0 0 chr1 174522049 174522102 -22673330 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1916 504 0 0 0 chr1 174522138 174522194 -22673238 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 3 1916 465 270 46 101 chr1 174522200 174522269 -22673163 - ID_B1 SINE B4 -15 209 157 3 1916 1282 20 0 13 chr1 174522269 174522418 -22673014 - B1_Mm SINE Alu 0 147 1 3 1916 465 270 46 101 chr1 174522418 174522566 -22672866 - ID_B1 SINE B4 -68 156 4 3 1916 322 146 45 0 chr1 174523921 174524010 -22671422 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 3 1916 1144 233 114 59 chr1 174524053 174524545 -22670887 - RMER4B LTR ERVK -15 570 13 3 1916 647 294 61 5 chr1 174524546 174524744 -22670688 - ID_B1 SINE B4 -15 209 1 4 1916 189 0 0 0 chr1 174525413 174525434 -22669998 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4 1916 972 141 0 0 chr1 174525527 174525704 -22669728 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1916 759 273 51 13 chr1 174525739 174525973 -22669459 - MER5C DNA MER1_type -44 269 27 4 1916 430 329 6 10 chr1 174526373 174526522 -22668910 - MER5A1 DNA MER1_type -14 152 2 4 1916 912 64 34 28 chr1 174527187 174527365 -22668067 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 4 1916 222 192 0 0 chr1 174527438 174527490 -22667942 + (TATG)n Simple_repeat Simple_repeat 2 53 0 4 1916 233 339 98 41 chr1 174528056 174528250 -22667182 + MIRc SINE MIR 25 229 -39 4 1916 855 78 0 0 chr1 174529561 174529677 -22665755 + (GA)n Simple_repeat Simple_repeat 2 117 0 4 1916 800 126 0 32 chr1 174529883 174530006 -22665426 - B2_Mm2 SINE B2 -30 165 47 4 1916 516 296 0 0 chr1 174530565 174530690 -22664742 - B1F SINE Alu -7 142 18 5 1916 351 369 0 41 chr1 174530690 174530708 -22664724 - ID_B1 SINE B4 -3 217 81 5 1916 200 200 0 0 chr1 174532846 174532881 -22662551 + CT-rich Low_complexity Low_complexity 2 36 0 5 1916 213 220 50 17 chr1 174533131 174533251 -22662181 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 1916 249 211 78 96 chr1 174533725 174533840 -22661592 + L1M5 LINE L1 5551 5663 -510 5 1916 22676 126 133 7 chr1 174533843 174538840 -22656592 + L1_Mus3 LINE L1 395 6033 -605 5 1916 1497 69 5 0 chr1 174538840 174539029 -22656403 + B2_Mm1t SINE B2 2 191 -2 5 1916 7217 87 35 14 chr1 174539029 174539631 -22655801 + L1_Mus3 LINE L1 6034 6638 0 5 1916 277 194 56 0 chr1 174539626 174539698 -22655734 + L1M5 LINE L1 5679 5754 -408 5 1916 266 229 169 0 chr1 174539704 174539787 -22655645 + L3b LINE CR1 196 292 -190 5 1916 312 27 0 0 chr1 174539804 174539841 -22655591 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1916 314 221 32 196 chr1 174539851 174539870 -22655562 - RMER10B LTR ERVL -64 334 316 6 1916 1209 103 43 21 chr1 174539870 174540058 -22655374 - B2_Mm2 SINE B2 -1 194 3 6 1916 314 221 32 196 chr1 174540058 174540196 -22655236 - RMER10B LTR ERVL -83 315 203 6 1916 861 128 0 0 chr1 174540487 174540667 -22654765 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1916 575 170 7 0 chr1 174540667 174540820 -22654612 + GA-rich Low_complexity Low_complexity 1 154 0 6 1916 306 130 0 0 chr1 174540831 174540877 -22654555 + (GGGAGA)n Simple_repeat Simple_repeat 4 49 0 6 1916 1472 149 66 20 chr1 174540879 174541236 -22654196 - RMER10B LTR ERVL -48 394 1 6 1916 436 263 107 19 chr1 174541896 174542055 -22653377 + RMER30 DNA MER1_type 23 195 -7 6 1916 291 328 57 47 chr1 174542208 174542419 -22653013 + MIR SINE MIR 5 217 -51 6 1916 377 342 50 10 chr1 174542421 174542622 -22652810 + MER3 DNA MER1_type 1 209 0 6 1916 2438 162 60 18 chr1 174543153 174543604 -22651828 + Lx5 LINE L1 6031 6500 -550 6 1916 512 15 0 15 chr1 174544070 174544136 -22651296 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 7 1916 971 214 82 0 chr1 174544359 174544555 -22650877 + B3 SINE B2 1 212 -4 7 1916 1340 224 121 0 chr1 174545070 174545401 -22650031 + MTEb LTR MaLR 1 371 -8 7 1916 272 192 68 14 chr1 174545612 174545686 -22649746 + Ricksha_c DNA MuDR 833 910 -1138 7 1916 224 280 62 45 chr1 174545710 174545822 -22649610 + L2b LINE L2 3182 3295 -80 7 1916 732 237 27 4 chr1 174546129 174546304 -22649128 + MTEb LTR MaLR 178 371 -8 7 1916 267 324 147 69 chr1 174547044 174547485 -22647947 + L2 LINE L2 1809 2258 -1161 7 1916 207 0 0 0 chr1 174547485 174547508 -22647924 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 7 1916 267 324 147 69 chr1 174547508 174547646 -22647786 + L2 LINE L2 2259 2432 -987 7 1916 4448 49 0 0 chr1 174548881 174549472 -22645960 - L1Md_F2 LINE L1 0 6582 6032 7 1916 235 339 42 79 chr1 174550291 174550480 -22644952 - RLTR22_Mur LTR ERVK -413 1435 1254 7 1916 21 0 0 0 chr1 174552102 174552123 -22643309 + AT_rich Low_complexity Low_complexity 1 21 0 8 1916 303 185 0 0 chr1 174552318 174552372 -22643060 + RMER19B LTR ERVK 308 361 -541 8 1916 7176 104 35 12 chr1 174552378 174553452 -22641980 + Lx3C LINE L1 5875 6973 -3 8 1916 1155 249 142 3 chr1 174553786 174553981 -22641451 + ORR1E LTR MaLR 5 223 -136 8 1916 387 0 0 0 chr1 174553981 174554024 -22641408 + (CTG)n Simple_repeat Simple_repeat 3 45 0 8 1916 1155 249 142 3 chr1 174554024 174554138 -22641294 + ORR1E LTR MaLR 224 356 -3 8 1916 1718 254 60 56 chr1 174554157 174554658 -22640774 + MER77 LTR ERVL 1 503 -104 8 1916 453 243 26 104 chr1 174555604 174555797 -22639635 + MIRb SINE MIR 70 247 -21 8 1916 594 0 0 0 chr1 174556018 174556084 -22639348 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 8 1916 225 0 0 0 chr1 174556085 174556110 -22639322 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1916 531 0 0 0 chr1 174556110 174556168 -22639264 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1916 650 202 0 0 chr1 174556175 174556289 -22639143 - RSINE1 SINE B4 -50 115 2 9 1916 1135 214 109 68 chr1 174556554 174556894 -22638538 + ORR1E LTR MaLR 6 359 0 9 1916 2197 131 30 3 chr1 174557578 174557915 -22637517 - ORR1A1 LTR MaLR 0 346 1 9 1916 225 227 37 74 chr1 174557933 174558014 -22637418 - MER20 DNA MER1_type 0 219 142 9 1916 1463 208 69 3 chr1 174558296 174558614 -22636818 + MTD LTR MaLR 43 381 -38 9 1916 1878 121 33 93 chr1 174558618 174558984 -22636448 + ORR1B2 LTR MaLR 16 359 -8 9 1916 587 278 45 40 chr1 174559311 174559513 -22635919 + MER20 DNA MER1_type 17 219 0 9 1916 228 200 0 0 chr1 174561062 174561117 -22634315 + GA-rich Low_complexity Low_complexity 1 55 0 9 1916 282 73 0 0 chr1 174561488 174561529 -22633903 + (T)n Simple_repeat Simple_repeat 1 41 0 9 1916 698 209 96 109 chr1 174562140 174562452 -22632980 + MER33 DNA MER1_type 1 308 -16 9 1916 364 230 138 22 chr1 174563717 174563855 -22631577 - MIR SINE MIR -9 253 100 1 1916 1250 141 16 0 chr1 174563872 174564064 -22631368 - B2_Mm2 SINE B2 0 195 1 1 1916 825 179 243 0 chr1 174564088 174564261 -22631171 - B3 SINE B2 -1 215 1 1 1916 204 200 0 0 chr1 174566188 174566223 -22629209 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1916 1262 194 91 105 chr1 174566548 174566696 -22628736 - ORR1D1 LTR MaLR -27 347 176 1 1916 369 0 0 0 chr1 174566696 174566737 -22628695 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1916 1262 194 91 105 chr1 174566737 174566939 -22628493 - ORR1D1 LTR MaLR -199 175 2 1 1916 658 304 148 40 chr1 174567148 174567642 -22627790 + MLT1F LTR MaLR 2 548 0 1 1916 189 0 0 0 chr1 174567834 174567855 -22627577 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1916 387 242 52 64 chr1 174568056 174568228 -22627204 - MamRep564 Unknown Unknown -53 304 135 1 1916 439 324 45 23 chr1 174568505 174568682 -22626750 + MLT1E3 LTR MaLR 438 618 -6 1 1916 317 197 33 0 chr1 174570007 174570068 -22625364 + ID4_ SINE ID 5 67 -16 1 1916 250 330 9 9 chr1 174570173 174570283 -22625149 - LTR33B LTR ERVL -17 486 377 1 1916 237 65 0 0 chr1 174571404 174571435 -22623997 + (TGG)n Simple_repeat Simple_repeat 2 32 0 1 1916 425 275 118 27 chr1 174571818 174572005 -22623427 + MIR SINE MIR 53 256 -6 1 1916 546 91 0 0 chr1 174572005 174572082 -22623350 + (TCC)n Simple_repeat Simple_repeat 3 79 0 1 1916 515 330 51 0 chr1 174573172 174573348 -22622084 + MLT1H2 LTR MaLR 5 189 -300 1 1916 606 294 27 0 chr1 174573546 174573733 -22621699 - B3A SINE B2 0 198 7 1 1916 1089 311 101 39 chr1 174573780 174574543 -22620889 + MLT1H2-int LTR MaLR 2 811 -598 1 1916 281 233 362 0 chr1 174574664 174574780 -22620652 + MLT1H2-int LTR MaLR 1053 1210 -199 1 1916 1191 72 0 0 chr1 174574780 174574960 -22620472 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1916 426 159 0 0 chr1 174574963 174575070 -22620362 + GA-rich Low_complexity Low_complexity 2 108 0 1 1916 208 264 333 6 chr1 174575550 174575706 -22619726 + MIRb SINE MIR 28 234 -34 1 1916 398 176 0 12 chr1 174576441 174576527 -22618905 + CT-rich Low_complexity Low_complexity 2 86 0 1 1916 609 268 0 0 chr1 174576529 174576671 -22618761 - B3A SINE B2 -16 182 41 1 1916 23 0 0 0 chr1 174577040 174577063 -22618369 + AT_rich Low_complexity Low_complexity 1 23 0 1 1916 1162 288 79 8 chr1 174577446 174577838 -22617594 - LTR33 LTR ERVL -57 458 39 1 1916 736 316 60 63 chr1 174577935 174578334 -22617098 + L4 LINE RTE 507 904 -1125 1 1916 201 370 66 15 chr1 174578605 174578742 -22616690 + L4 LINE RTE 1159 1302 -727 1 1916 286 299 36 97 chr1 174578869 174579065 -22616367 + MER3 DNA MER1_type 3 186 -23 1 1916 248 170 0 21 chr1 174579260 174579308 -22616124 - B1F SINE Alu 0 149 103 1 1916 328 364 28 33 chr1 174579409 174579591 -22615841 + MLT1F1 LTR MaLR 1 181 -388 1 1916 576 271 21 0 chr1 174580006 174580150 -22615282 - B1F1 SINE Alu 0 149 3 1 1916 255 311 37 46 chr1 174580251 174580359 -22615073 - PB1D10 SINE Alu 0 117 11 1 1916 269 121 52 0 chr1 174580445 174580503 -22614929 + A-rich Low_complexity Low_complexity 2 62 0 1 1916 789 99 0 0 chr1 174581325 174581446 -22613986 + (GA)n Simple_repeat Simple_repeat 2 122 0 1 1916 316 205 94 6 chr1 174582149 174582255 -22613177 - MIRb SINE MIR -33 229 117 1 1916 807 171 3 0 chr1 174583463 174583792 -22611640 + (CA)n Simple_repeat Simple_repeat 1 330 0 1 1916 575 192 0 77 chr1 174585200 174585330 -22610102 + B1_Mur1 SINE Alu 30 149 0 1 1916 327 292 28 28 chr1 174587286 174587395 -22608037 - PB1D10 SINE Alu -7 110 2 1 1916 240 259 21 17 chr1 174587579 174587648 -22607784 + MIRc SINE MIR 97 170 -98 1 1917 180 0 0 0 chr1 174588120 174588140 -22607292 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1917 842 254 41 10 chr1 174588309 174588504 -22606928 + B3 SINE B2 15 215 -1 1 1917 498 292 43 61 chr1 174588573 174588737 -22606695 - B3A SINE B2 -15 183 23 1 1917 228 287 33 33 chr1 174588769 174588825 -22606607 - B4A SINE B4 -154 138 82 1 1917 1112 0 0 8 chr1 174588825 174588954 -22606478 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 1 1917 228 287 33 33 chr1 174588954 174588987 -22606445 - B4A SINE B4 -211 81 49 1 1917 180 0 0 0 chr1 174589465 174589485 -22605947 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1917 197 333 0 14 chr1 174589514 174589587 -22605845 - MIRm SINE MIR -121 155 84 1 1917 582 286 146 0 chr1 174590187 174590365 -22605067 - ID_B1 SINE B4 -20 204 1 1 1917 516 105 0 0 chr1 174590365 174590441 -22604991 + (TCC)n Simple_repeat Simple_repeat 3 78 0 1 1917 222 184 0 0 chr1 174590444 174590482 -22604950 + CT-rich Low_complexity Low_complexity 2 39 0 1 1917 1686 87 196 4 chr1 174590531 174590807 -22604625 - ORR1A4 LTR MaLR 0 329 1 1 1917 971 284 136 3 chr1 174591477 174591844 -22603588 + Tigger7 DNA MER2_type 11 426 -2065 1 1917 285 29 0 0 chr1 174592178 174592212 -22603220 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 1 1917 710 32 0 11 chr1 174592213 174592307 -22603125 + (CAAAC)n Simple_repeat Simple_repeat 1 93 0 1 1917 253 83 41 20 chr1 174592395 174592444 -22602988 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 1 1917 1976 226 27 21 chr1 174592444 174592919 -22602513 - Lx7 LINE L1 -333 7363 6886 1 1917 1496 268 96 77 chr1 174592924 174593667 -22601765 - L1MC3 LINE L1 -33 7752 6996 1 1917 375 184 0 0 chr1 174594130 174594217 -22601215 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1917 298 266 103 52 chr1 174594567 174594761 -22600671 - L2a LINE L2 -1 3425 3222 1 1917 259 237 0 33 chr1 174594828 174594889 -22600543 + PB1D9 SINE Alu 1 59 -61 1 1917 219 34 0 145 chr1 174594889 174595096 -22600336 + (CAGGG)n Simple_repeat Simple_repeat 4 180 0 1 1917 517 196 9 27 chr1 174595175 174595285 -22600147 + B1F2 SINE Alu 42 149 0 1 1917 1392 88 10 5 chr1 174595861 174596055 -22599377 - B2_Mm2 SINE B2 0 195 1 1 1917 257 196 20 0 chr1 174596199 174596250 -22599182 - L1MC3 LINE L1 -520 7265 7214 1 1917 3601 161 108 73 chr1 174596359 174597219 -22598213 + RMER19B LTR ERVK 1 890 -12 1 1917 487 288 77 134 chr1 174597245 174597998 -22597434 - Charlie2a DNA MER1_type -686 2175 1466 1 1917 273 267 53 0 chr1 174598276 174598351 -22597081 - MER45A DNA Tip100 0 178 100 1 1917 837 80 0 0 chr1 174598501 174598626 -22596806 - L1Md_F2 LINE L1 -8 6574 6450 1 1917 38 0 0 0 chr1 174598645 174598683 -22596749 + AT_rich Low_complexity Low_complexity 1 38 0 1 1917 223 182 0 0 chr1 174598814 174598858 -22596574 + A-rich Low_complexity Low_complexity 1 44 0 1 1917 356 172 0 11 chr1 174599181 174599269 -22596163 + CT-rich Low_complexity Low_complexity 2 88 0 1 1917 735 48 0 45 chr1 174599767 174599877 -22595555 - BC1_Mm scRNA scRNA -47 105 1 1 1917 207 277 107 21 chr1 174600151 174600291 -22595141 + MIR SINE MIR 110 261 -1 1 1917 363 250 44 22 chr1 174601134 174601269 -22594163 - MLT1C LTR MaLR -95 372 235 1 1917 495 0 0 0 chr1 174601396 174601451 -22593981 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1917 7826 52 5 9 chr1 174601453 174602410 -22593022 - L1Md_F2 LINE L1 -19 6566 5614 1 1917 21347 75 1 204 chr1 174602405 174607828 -22587604 - L1Md_F2 LINE L1 -1102 4784 366 1 1917 573 55 0 0 chr1 174607862 174607935 -22587497 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1917 23 0 0 0 chr1 174608140 174608163 -22587269 + AT_rich Low_complexity Low_complexity 1 23 0 1 1917 326 248 12 54 chr1 174608185 174608351 -22587081 - Charlie2a DNA MER1_type -1387 1474 1316 1 1917 405 287 17 25 chr1 174608444 174608562 -22586870 + PB1D10 SINE Alu 1 117 0 1 1917 540 0 0 0 chr1 174609052 174609112 -22586320 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1917 4697 139 7 13 chr1 174609436 174610180 -22585252 - Lx2B LINE L1 -10 6990 6252 1 1917 252 0 0 0 chr1 174610308 174610336 -22585096 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 1 1917 2584 236 118 16 chr1 174611554 174612226 -22583206 + Lx8 LINE L1 6494 7233 -240 1 1917 468 0 0 0 chr1 174612265 174612317 -22583115 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1917 307 214 33 74 chr1 174612321 174612442 -22582990 + Lx8 LINE L1 7353 7468 -5 1 1917 249 319 21 11 chr1 174612553 174612648 -22582784 - Tigger9a DNA Tigger -42 690 595 1 1917 224 220 19 39 chr1 174612831 174612883 -22582549 + ID4_ SINE ID 8 58 -25 1 1917 784 286 41 37 chr1 174614728 174614971 -22580461 - 7SK RNA RNA -86 245 2 1 1917 293 343 20 0 chr1 174615185 174615284 -22580148 + MER63B DNA AcHobo 287 387 -49 1 1917 235 331 180 53 chr1 174615441 174615725 -22579707 + LTR79 LTR ERVL 208 527 0 1 1917 33 0 0 0 chr1 174615801 174615834 -22579598 + AT_rich Low_complexity Low_complexity 1 33 0 1 1917 1557 258 26 14 chr1 174616028 174616449 -22578983 - L1MD3 LINE L1 -17 7978 7553 1 1917 1764 282 45 50 chr1 174616783 174617444 -22577988 - Tigger9a DNA Tigger -7 725 68 1 1917 3630 162 25 10 chr1 174618143 174618736 -22576696 - Lx3C LINE L1 -2 6974 6373 1 1917 6947 37 11 0 chr1 174618732 174619512 -22575920 - L1Md_T LINE L1 0 6582 5794 1 1917 5394 25 0 0 chr1 174619512 174620125 -22575307 + L1Md_T LINE L1 5230 5842 -41 1 1917 1337 166 8 25 chr1 174620121 174620362 -22575070 - Lx3C LINE L1 -590 6386 6150 1 1917 651 314 30 34 chr1 174620364 174620598 -22574834 - B4A SINE B4 -55 237 5 1 1917 25 0 0 0 chr1 174620642 174620667 -22574765 + AT_rich Low_complexity Low_complexity 1 25 0 1 1917 315 305 38 0 chr1 174621577 174621708 -22573724 - L1MA7 LINE L1 0 6291 6156 1 1917 279 0 0 0 chr1 174621741 174621772 -22573660 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1917 635 305 41 5 chr1 174621968 174622151 -22573281 + B3 SINE B2 2 188 -10 1 1917 603 296 22 0 chr1 174622239 174622374 -22573058 - ID_B1 SINE B4 -7 217 80 1 1917 191 32 0 61 chr1 174622410 174622443 -22572989 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1917 1297 55 0 0 chr1 174622447 174622593 -22572839 - B1_Mm SINE Alu 0 147 2 1 1917 233 0 0 59 chr1 174623396 174623430 -22572002 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1917 21 36 0 0 chr1 174624164 174624192 -22571240 + AT_rich Low_complexity Low_complexity 1 28 0 2 1917 628 273 56 117 chr1 174624299 174624548 -22570884 + MTE2a LTR MaLR 1 234 -145 2 1917 5880 60 1 0 chr1 174624548 174625275 -22570157 + L1Md_F2 LINE L1 4858 5585 -298 2 1917 8732 31 20 3 chr1 174625276 174626254 -22569178 + L1Md_F2 LINE L1 5587 6581 -1 2 1917 279 0 0 0 chr1 174626332 174626363 -22569069 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1917 784 120 28 28 chr1 174626943 174627123 -22568309 + C-rich Low_complexity Low_complexity 1 180 0 2 1917 234 105 0 0 chr1 174629386 174629424 -22566008 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1917 420 294 85 83 chr1 174629497 174629649 -22565783 - Lx9 LINE L1 0 7473 7328 2 1917 628 91 18 0 chr1 174629649 174629759 -22565673 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 2 1917 538 288 93 24 chr1 174629759 174629981 -22565451 - Lx9 LINE L1 -182 7462 7227 2 1917 1010 340 169 19 chr1 174630855 174631632 -22563800 - L4 LINE RTE -559 1470 578 2 1917 1109 273 26 7 chr1 174631679 174631948 -22563484 + B4 SINE B4 3 276 -16 2 1917 205 388 0 0 chr1 174631954 174632034 -22563398 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1917 266 160 0 0 chr1 174632344 174632394 -22563038 + RLTR22_Mur LTR ERVK 2 51 -1797 2 1917 292 236 63 9 chr1 174633493 174633604 -22561828 - Lx9 LINE L1 -7 7637 7521 2 1917 524 56 14 0 chr1 174633608 174633680 -22561752 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1917 1332 149 4 31 chr1 174633680 174633908 -22561524 - Lx9 LINE L1 -214 7430 7209 2 1917 336 176 88 0 chr1 174633927 174633995 -22561437 + Lx9 LINE L1 7130 7203 -441 2 1917 746 307 48 10 chr1 174634124 174634331 -22561101 - ID_B1 SINE B4 -4 220 6 2 1917 582 298 19 0 chr1 174634519 174634680 -22560752 + MER5B DNA MER1_type 1 164 -14 2 1917 249 202 0 45 chr1 174635175 174635263 -22560169 + RMER17C LTR ERVK 171 254 -156 2 1917 468 0 0 0 chr1 174636090 174636142 -22559290 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1917 947 278 80 54 chr1 174637493 174637881 -22557551 - MTD LTR MaLR -16 403 6 2 1917 387 274 203 14 chr1 174638127 174638275 -22557157 + MER5B DNA MER1_type 2 177 -1 2 1917 213 65 0 0 chr1 174638307 174638338 -22557094 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1917 2279 103 21 59 chr1 174639035 174639374 -22556058 - ORR1A3 LTR MaLR 0 326 1 2 1917 214 330 37 28 chr1 174640454 174640563 -22554869 + MIR SINE MIR 61 170 -92 2 1917 759 330 71 8 chr1 174640611 174640965 -22554467 - MER57D LTR ERV1 -7 404 29 2 1917 594 176 22 14 chr1 174641264 174641383 -22554049 - Lx9 LINE L1 -4 7640 7520 2 1917 192 40 0 0 chr1 174641383 174641408 -22554024 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1917 1620 193 62 22 chr1 174641408 174641763 -22553669 - Lx9 LINE L1 -169 7475 7107 2 1917 1227 163 18 24 chr1 174641760 174642009 -22553423 + Lx8 LINE L1 5637 5915 -1558 2 1917 202 321 8 102 chr1 174642688 174642806 -22552626 - L2a LINE L2 -13 3413 3307 2 1917 515 266 121 19 chr1 174642948 174643155 -22552277 + L2a LINE L2 3199 3426 0 2 1917 336 102 0 0 chr1 174643527 174643576 -22551856 + PB1D9 SINE Alu 7 55 -65 2 1917 615 178 9 9 chr1 174643622 174643730 -22551702 + B1_Mur4 SINE Alu 43 150 0 2 1917 614 296 145 38 chr1 174643819 174644054 -22551378 - B4 SINE B4 -32 260 1 2 1917 662 308 5 76 chr1 174644391 174644602 -22550830 - B3A SINE B2 -1 197 2 2 1917 357 288 67 82 chr1 174644612 174644820 -22550612 - L1MC4 LINE L1 -140 7902 7698 2 1917 1210 247 123 11 chr1 174645040 174645478 -22549954 - L1MC4 LINE L1 -517 7525 7039 2 1917 38967 12 0 7 chr1 174646828 174652230 -22543202 + L1Md_A LINE L1 227 5586 -297 2 1917 9331 17 0 0 chr1 174652230 174653263 -22542169 + L1Md_A LINE L1 5587 6582 0 2 1917 30905 115 9 54 chr1 174653485 174656783 -22538649 + L1Md_A LINE L1 716 3847 -2036 2 1917 8537 58 0 0 chr1 174656783 174657779 -22537653 + L1Md_T LINE L1 5587 6582 0 2 1917 30905 123 12 38 chr1 174657779 174660566 -22534866 + L1Md_A LINE L1 3848 6578 -4 2 1917 21 36 0 0 chr1 174660788 174660816 -22534616 + AT_rich Low_complexity Low_complexity 1 28 0 2 1917 1269 265 15 22 chr1 174660984 174661331 -22534101 - Lx5 LINE L1 -169 6881 6540 2 1917 290 346 32 0 chr1 174661401 174661557 -22533875 + L1M5 LINE L1 5505 5665 -459 2 1917 9909 12 2 1 chr1 174661958 174663088 -22532344 + L1Md_A LINE L1 214 1344 -5380 2 1917 11330 6 0 0 chr1 174665999 174667330 -22528102 + L1Md_A LINE L1 4256 5586 -297 2 1917 8979 6 0 0 chr1 174667330 174668326 -22527106 + L1Md_A LINE L1 5587 6582 0 2 1917 291 200 40 13 chr1 174668473 174668549 -22526883 + CT-rich Low_complexity Low_complexity 3 80 0 2 1917 318 26 0 0 chr1 174668566 174668605 -22526827 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1917 686 290 127 45 chr1 174668632 174668677 -22526755 - B4A SINE B4 -2 290 248 2 1917 1298 249 65 38 chr1 174668677 174669044 -22526388 - MTE2b LTR MaLR 0 379 3 2 1917 686 290 127 45 chr1 174669044 174669265 -22526167 - B4A SINE B4 -45 247 2 2 1917 183 42 0 0 chr1 174669769 174669793 -22525639 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1917 244 258 93 20 chr1 174669885 174670042 -22525390 - L1MC1 LINE L1 -11 6333 6165 2 1917 651 234 89 58 chr1 174670057 174670316 -22525116 - L1MC1 LINE L1 -213 6120 5854 2 1917 1420 242 43 48 chr1 174670320 174670693 -22524739 + MTEa LTR MaLR 1 371 -8 2 1917 282 224 117 13 chr1 174670745 174670822 -22524610 + PB1 SINE Alu 1 85 -42 2 1917 1000 154 82 50 chr1 174671116 174671335 -22524097 - URR1A DNA MER1_type 0 226 1 2 1917 349 214 0 30 chr1 174673035 174673110 -22522322 + ID4_ SINE ID 21 93 -59 2 1917 649 192 293 0 chr1 174673609 174673776 -22521656 - B3 SINE B2 0 216 1 2 1917 486 0 0 0 chr1 174674987 174675041 -22520391 + (CTCA)n Simple_repeat Simple_repeat 1 54 0 2 1917 197 192 80 6 chr1 174676034 174676084 -22519348 + MIR SINE MIR 190 240 -28 2 1917 221 204 107 36 chr1 174676056 174676112 -22519320 + L2a LINE L2 3367 3426 0 2 1917 345 282 137 0 chr1 174677436 174677560 -22517872 + MLT1A1 LTR MaLR 4 144 -264 2 1917 259 218 125 94 chr1 174677621 174677717 -22517715 + MLT1A1 LTR MaLR 310 408 0 2 1917 795 311 107 36 chr1 174678310 174678768 -22516664 - MamGypLTR1a LTR Gypsy 0 803 277 2 1917 331 362 93 7 chr1 174679019 174679169 -22516263 - L2b LINE L2 -10 3365 3203 2 1917 226 290 214 11 chr1 174679825 174680003 -22515429 - L2b LINE L2 -550 2869 2656 2 1917 648 332 135 26 chr1 174680302 174680605 -22514827 - MLT1D LTR MaLR -137 368 33 2 1917 576 0 0 0 chr1 174681962 174682026 -22513406 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1917 266 191 0 18 chr1 174682027 174682139 -22513293 + (CAGAGA)n Simple_repeat Simple_repeat 1 110 0 2 1917 594 0 0 0 chr1 174682150 174682216 -22513216 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1917 819 225 40 74 chr1 174682234 174682532 -22512900 - Lx7 LINE L1 -1816 5880 5593 2 1917 194 381 29 22 chr1 174684340 174684477 -22510955 - MIR3 SINE MIR -56 152 15 2 1917 519 60 0 0 chr1 174684513 174684580 -22510852 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 2 1917 384 286 35 9 chr1 174684600 174684713 -22510719 - RSINE1 SINE B4 -21 144 29 2 1917 301 204 131 61 chr1 174685723 174685822 -22509610 - HAL1 LINE L1 -355 2152 2047 2 1917 459 0 0 0 chr1 174685832 174685883 -22509549 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1917 453 306 102 0 chr1 174686038 174686254 -22509178 - HAL1 LINE L1 -698 1809 1572 2 1917 291 155 58 0 chr1 174686263 174686366 -22509066 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1917 560 108 59 18 chr1 174686521 174686690 -22508742 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1917 599 263 118 46 chr1 174686711 174686974 -22508458 - B4A SINE B4 -10 282 1 2 1917 462 314 134 43 chr1 174687041 174687130 -22508302 - HAL1 LINE L1 -1001 1506 1419 2 1917 756 251 53 5 chr1 174687130 174687318 -22508114 - B3A SINE B2 0 198 2 2 1917 462 314 134 43 chr1 174687318 174687557 -22507875 - HAL1 LINE L1 -1089 1418 1148 2 1917 296 284 49 69 chr1 174687707 174687809 -22507623 - PB1D10 SINE Alu -16 101 2 2 1917 23 33 0 0 chr1 174688490 174688520 -22506912 + AT_rich Low_complexity Low_complexity 1 30 0 2 1917 28 0 0 0 chr1 174688615 174688643 -22506789 + AT_rich Low_complexity Low_complexity 1 28 0 2 1917 494 0 0 32 chr1 174688656 174688719 -22506713 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2 1917 1416 150 27 0 chr1 174689058 174689278 -22506154 - MTC LTR MaLR 0 421 196 2 1917 420 164 0 0 chr1 174689489 174689556 -22505876 - MTC LTR MaLR -211 210 144 2 1917 229 150 0 0 chr1 174689769 174689809 -22505623 - MTEa LTR MaLR -7 372 333 2 1917 376 228 78 19 chr1 174689931 174690034 -22505398 - MTC LTR MaLR -250 109 1 2 1917 257 0 30 0 chr1 174690250 174690283 -22505149 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 2 1917 570 289 255 21 chr1 174690292 174690712 -22504720 - LTR50 LTR ERVL -148 647 130 2 1917 495 0 0 0 chr1 174690862 174690917 -22504515 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 1917 384 77 0 0 chr1 174691032 174691084 -22504348 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 2 1917 477 0 0 0 chr1 174691086 174691139 -22504293 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1917 25 0 0 0 chr1 174691679 174691704 -22503728 + AT_rich Low_complexity Low_complexity 1 25 0 2 1917 228 290 29 0 chr1 174692278 174692347 -22503085 - B4A SINE B4 -85 207 137 2 1917 338 237 0 50 chr1 174692369 174692449 -22502983 - B4 SINE B4 -212 80 5 2 1917 1410 254 177 33 chr1 174692769 174693592 -22501840 + Charlie2b DNA MER1_type 1794 2735 -47 2 1917 325 289 36 0 chr1 174694815 174694898 -22500534 - PB1D10 SINE Alu -17 100 15 2 1917 303 210 0 16 chr1 174695007 174695070 -22500362 + B3A SINE B2 15 76 -122 2 1917 236 261 0 0 chr1 174695097 174695143 -22500289 + ID4_ SINE ID 2 47 -36 2 1917 243 0 0 0 chr1 174695157 174695184 -22500248 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1917 549 0 0 0 chr1 174695190 174695251 -22500181 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1917 2781 78 36 10 chr1 174695330 174695743 -22499689 + L1_Mus3 LINE L1 6212 6635 -3 2 1917 373 329 61 48 chr1 174695955 174696249 -22499183 - L1M5 LINE L1 -809 5337 5040 2 1917 1175 234 95 45 chr1 174696657 174696985 -22498447 + MTD LTR MaLR 53 404 -15 2 1917 391 320 196 21 chr1 174697008 174697426 -22498006 - L1MC LINE L1 -1869 4277 3787 2 1917 304 308 73 69 chr1 174697751 174698032 -22497400 - L1M5 LINE L1 -2746 3400 3120 2 1917 459 0 0 0 chr1 174698079 174698130 -22497302 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1917 1197 268 14 3 chr1 174698166 174698451 -22496981 - B4A SINE B4 -4 288 1 2 1917 357 93 0 0 chr1 174698468 174698522 -22496910 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1917 646 283 33 0 chr1 174698530 174698682 -22496750 - B3A SINE B2 -41 157 1 2 1917 1097 97 45 61 chr1 174699029 174699227 -22496205 + B2_Mm2 SINE B2 1 195 0 3 1917 265 345 0 7 chr1 174699589 174699690 -22495742 - B4 SINE B4 -48 176 78 3 1917 21 89 0 0 chr1 174700387 174700443 -22494989 + AT_rich Low_complexity Low_complexity 1 56 0 3 1917 2199 212 51 13 chr1 174700575 174701105 -22494327 + Lx9 LINE L1 6805 7354 -290 3 1917 353 241 91 14 chr1 174701253 174701396 -22494036 + Lx9 LINE L1 7361 7514 -130 3 1917 189 107 0 0 chr1 174701404 174701432 -22494000 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1917 408 189 0 18 chr1 174701436 174701549 -22493883 + Lx9 LINE L1 7459 7569 -75 3 1917 267 173 0 0 chr1 174701557 174701606 -22493826 - ORR1B2 LTR MaLR 0 421 325 3 1917 215 146 24 0 chr1 174701640 174701681 -22493751 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 3 1917 1091 278 125 21 chr1 174701684 174702059 -22493373 - Lx5 LINE L1 -23 7027 6614 3 1917 705 91 240 0 chr1 174702054 174702208 -22493224 - L1_Mur3 LINE L1 -2946 2931 2741 3 1917 1340 132 16 0 chr1 174702209 174702460 -22492972 - L1_Mur2 LINE L1 -4315 1562 1308 3 1917 7507 155 23 18 chr1 174702457 174703144 -22492288 - L1_Mur3 LINE L1 -3135 2742 2067 3 1917 189 0 0 0 chr1 174703144 174703165 -22492267 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 1917 7507 178 20 16 chr1 174703165 174704315 -22491117 - L1_Mur3 LINE L1 -3811 2066 895 3 1917 195 42 0 0 chr1 174704315 174704339 -22491093 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 3 1917 1347 72 0 0 chr1 174704340 174704520 -22490912 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1917 1547 184 78 7 chr1 174704935 174705231 -22490201 - ORR1B2 LTR MaLR -48 319 3 3 1917 228 67 0 0 chr1 174705348 174705378 -22490054 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1917 3655 187 122 44 chr1 174705446 174706272 -22489160 - RMER19B LTR ERVK -11 891 1 3 1917 309 148 19 178 chr1 174706274 174706381 -22489051 - Lx5 LINE L1 -94 6956 6867 3 1917 267 54 0 0 chr1 174706438 174706475 -22488957 + (CACAA)n Simple_repeat Simple_repeat 1 37 0 3 1917 413 287 107 20 chr1 174707152 174707404 -22488028 + L1M4b LINE L1 1229 1502 -5832 3 1917 430 215 47 35 chr1 174707476 174707645 -22487787 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1917 679 204 5 143 chr1 174707745 174707962 -22487470 + B3A SINE B2 1 187 -11 3 1917 414 53 0 0 chr1 174708084 174708141 -22487291 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 3 1917 1674 187 29 45 chr1 174708531 174708911 -22486521 + ORR1D1 LTR MaLR 1 374 0 3 1917 469 215 11 11 chr1 174709547 174709641 -22485791 - B4A SINE B4 -197 95 2 3 1917 975 201 70 0 chr1 174709894 174710093 -22485339 - B3 SINE B2 -1 215 3 3 1917 369 356 11 6 chr1 174710148 174710326 -22485106 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1917 207 250 0 0 chr1 174710401 174710485 -22484947 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1917 291 353 6 17 chr1 174710577 174710750 -22484682 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1917 195 189 0 0 chr1 174710776 174710829 -22484603 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1917 545 250 228 4 chr1 174712024 174712257 -22483175 + MLT1B LTR MaLR 94 378 -12 3 1917 580 269 58 16 chr1 174712809 174712998 -22482434 - MER2 DNA MER2_type -49 296 100 3 1917 495 0 0 0 chr1 174712998 174713053 -22482379 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1917 816 107 0 128 chr1 174713053 174713225 -22482207 + ORR1B2 LTR MaLR 4 153 -214 3 1917 976 118 0 0 chr1 174713257 174713393 -22482039 + B1_Mus2 SINE Alu 2 137 -10 3 1917 549 0 0 0 chr1 174713393 174713454 -22481978 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3 1917 622 217 177 3 chr1 174713518 174713835 -22481597 + L1M3 LINE L1 4275 4670 -1470 3 1917 1027 244 89 10 chr1 174713894 174714190 -22481242 + ORR1D2 LTR MaLR 21 345 -34 3 1917 438 53 0 0 chr1 174714293 174714350 -22481082 + (TATG)n Simple_repeat Simple_repeat 2 58 0 3 1917 381 328 109 30 chr1 174714421 174714723 -22480709 - L1M5 LINE L1 -1236 4910 4585 3 1917 627 71 0 0 chr1 174716540 174716625 -22478807 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 3 1917 211 122 41 0 chr1 174716670 174716719 -22478713 + CT-rich Low_complexity Low_complexity 2 52 0 3 1917 596 267 138 5 chr1 174716723 174716919 -22478513 - ID_B1 SINE B4 -2 222 1 3 1917 252 317 37 73 chr1 174717094 174717203 -22478229 + Charlie21a DNA MER1_type 128 232 -981 3 1917 673 251 104 0 chr1 174717221 174717432 -22478000 + Charlie21a DNA MER1_type 293 525 -688 3 1917 44 88 0 0 chr1 174717624 174717738 -22477694 + AT_rich Low_complexity Low_complexity 1 114 0 3 1917 21 36 0 0 chr1 174718742 174718770 -22476662 + AT_rich Low_complexity Low_complexity 1 28 0 3 1918 2634 163 15 13 chr1 174719208 174719673 -22475759 - RMER4A LTR ERVK 0 466 1 3 1918 21 0 0 0 chr1 174719943 174719964 -22475468 + AT_rich Low_complexity Low_complexity 1 21 0 3 1918 22 0 0 0 chr1 174720001 174720023 -22475409 + AT_rich Low_complexity Low_complexity 1 22 0 3 1918 29 28 0 0 chr1 174721002 174721038 -22474394 + AT_rich Low_complexity Low_complexity 1 36 0 3 1918 299 311 77 10 chr1 174721113 174721217 -22474215 + Charlie10a DNA MER1_type 170 280 0 3 1918 10226 132 79 9 chr1 174721370 174724178 -22471254 - Lx2 LINE L1 -6 6991 3987 3 1918 4058 273 45 25 chr1 174724287 174725625 -22469807 - Lx9 LINE L1 -20 7624 6260 3 1918 22 70 0 0 chr1 174725641 174725684 -22469748 + AT_rich Low_complexity Low_complexity 1 43 0 3 1918 583 276 10 30 chr1 174725704 174725902 -22469530 + Lx7 LINE L1 6673 6866 -830 3 1918 1731 239 49 39 chr1 174725911 174726604 -22468828 - L1_Rod LINE L1 -3701 2146 1447 3 1918 962 254 87 79 chr1 174726642 174727009 -22468423 + ORR1D2 LTR MaLR 1 370 0 3 1918 673 208 160 0 chr1 174727017 174727254 -22468178 - L1_Rod LINE L1 -6327 1281 1007 3 1918 300 148 19 0 chr1 174727411 174727465 -22467967 - B2_Mm2 SINE B2 -94 101 47 3 1918 1149 135 17 0 chr1 174727532 174727710 -22467722 - B2_Mm2 SINE B2 -14 181 1 3 1918 476 319 46 37 chr1 174728999 174729217 -22466215 - RMER15 LTR ERVL -13 562 343 3 1918 3270 190 26 15 chr1 174729658 174730273 -22465159 - RLTR17 LTR ERVK -69 623 2 3 1918 1100 276 45 15 chr1 174730336 174730667 -22464765 - Lx8 LINE L1 -17 7456 7116 3 1918 531 0 0 0 chr1 174730894 174730953 -22464479 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1918 227 0 91 0 chr1 174731045 174731078 -22464354 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 3 1918 4447 16 0 0 chr1 174731090 174731583 -22463849 + MT2_Mm LTR ERVL 1 493 0 3 1918 985 271 73 35 chr1 174732066 174732407 -22463025 + Lx5 LINE L1 6686 7039 -11 3 1918 311 275 116 55 chr1 174734839 174734985 -22460447 - HAL1-3A_ME LINE L1 -420 2438 2284 3 1918 28 0 0 0 chr1 174736964 174736992 -22458440 + AT_rich Low_complexity Low_complexity 1 28 0 3 1918 309 187 44 9 chr1 174737005 174737118 -22458314 + (TA)n Simple_repeat Simple_repeat 1 117 0 3 1918 1485 351 84 21 chr1 174737462 174738483 -22456949 + Arthur1B DNA Tip100 140 1225 0 3 1918 790 221 83 5 chr1 174738499 174738704 -22456728 + Lx6 LINE L1 7229 7449 -11 3 1918 817 154 4 14 chr1 174739148 174739429 -22456003 + (CA)n Simple_repeat Simple_repeat 1 277 0 3 1918 633 38 0 0 chr1 174739440 174739520 -22455912 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 1918 737 246 72 43 chr1 174739655 174739931 -22455501 - B4A SINE B4 -6 286 3 3 1918 374 283 0 50 chr1 174739961 174740080 -22455352 - PB1D10 SINE Alu -4 113 1 3 1918 302 340 46 37 chr1 174740643 174740860 -22454572 - MIR SINE MIR 0 268 40 3 1918 799 272 17 0 chr1 174741684 174741857 -22453575 + B3A SINE B2 1 176 -22 3 1918 1143 70 0 0 chr1 174741858 174742060 -22453372 + (CA)n Simple_repeat Simple_repeat 1 202 0 3 1918 756 0 0 0 chr1 174742488 174742572 -22452860 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 1918 834 132 0 0 chr1 174742999 174743135 -22452297 + (TTCC)n Simple_repeat Simple_repeat 2 137 0 3 1918 249 171 0 0 chr1 174743154 174743195 -22452237 - Charlie4a DNA MER1_type -51 457 417 3 1918 195 42 0 0 chr1 174743212 174743236 -22452196 + (CAT)n Simple_repeat Simple_repeat 3 26 0 3 1918 504 86 0 0 chr1 174743376 174743446 -22451986 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1918 500 81 14 0 chr1 174745291 174745365 -22450067 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1918 2531 154 187 4 chr1 174745375 174745930 -22449502 - Lx LINE L1 -2 6652 5996 3 1918 23185 95 7 7 chr1 174746768 174751137 -22444295 - L1_Mus1 LINE L1 -3 6651 2208 3 1918 4101 44 4 2 chr1 174751137 174751636 -22443796 - L1Md_F2 LINE L1 -1 6581 6082 3 1918 17152 200 9 107 chr1 174751636 174753133 -22442299 - L1_Mus1 LINE L1 -3652 2228 1206 3 1918 3708 159 110 10 chr1 174753102 174753881 -22441551 - L1Md_F LINE L1 -5380 1139 283 3 1918 184 342 40 71 chr1 174753908 174754034 -22441398 - L3b LINE CR1 -234 248 127 3 1918 1419 127 42 4 chr1 174754785 174755022 -22440410 + Lx3B LINE L1 6724 6969 -4 3 1918 255 152 0 0 chr1 174755025 174755071 -22440361 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 1918 1293 62 22 49 chr1 174755693 174755878 -22439554 - B2_Mm2 SINE B2 -14 181 2 3 1918 263 372 15 15 chr1 174758619 174758750 -22436682 + MIRc SINE MIR 46 176 -92 3 1918 195 327 96 17 chr1 174759568 174759683 -22435749 + MIR3 SINE MIR 78 201 -7 3 1918 1916 206 47 15 chr1 174760260 174760664 -22434768 - MTD LTR MaLR -2 417 1 3 1918 228 309 10 41 chr1 174760709 174760807 -22434625 + MIR3 SINE MIR 107 201 -7 3 1918 265 341 201 53 chr1 174761432 174761810 -22433622 - LTR16A LTR ERVL 0 451 18 3 1918 25 31 0 0 chr1 174762906 174762938 -22432494 + AT_rich Low_complexity Low_complexity 1 32 0 3 1918 343 229 0 0 chr1 174762942 174763003 -22432429 + B1F2 SINE Alu 1 61 -88 3 1918 37 86 0 0 chr1 174763069 174763162 -22432270 + AT_rich Low_complexity Low_complexity 1 93 0 3 1918 4361 190 74 0 chr1 174763559 174764412 -22431020 + Lx5 LINE L1 6131 7046 -4 3 1918 406 276 55 8 chr1 174764489 174764617 -22430815 - Lx7 LINE L1 -400 7296 7163 3 1918 922 227 61 23 chr1 174764644 174764906 -22430526 - Lx7 LINE L1 -885 6811 6540 3 1918 310 247 12 0 chr1 174765443 174765528 -22429904 + L1_Mur1 LINE L1 925 1010 -5972 4 1918 1170 248 236 2 chr1 174765533 174765969 -22429463 + Lx5 LINE L1 6513 7050 0 4 1918 236 300 0 0 chr1 174766229 174766309 -22429123 - L1M5 LINE L1 -241 5921 5842 4 1918 444 325 43 25 chr1 174766448 174766609 -22428823 - MER21B LTR ERV1 -130 733 570 4 1918 477 0 0 0 chr1 174766739 174766792 -22428640 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 4 1918 1108 107 0 17 chr1 174766792 174766973 -22428459 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 1918 331 243 116 19 chr1 174766981 174767136 -22428296 - Lx7 LINE L1 -20 7676 7507 4 1918 369 62 0 0 chr1 174767140 174767188 -22428244 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1918 2715 213 54 10 chr1 174767189 174767815 -22427617 - Lx7 LINE L1 -307 7389 6736 4 1918 643 322 85 61 chr1 174767951 174768281 -22427151 - MER21B LTR ERV1 -408 455 118 4 1918 288 0 0 0 chr1 174768399 174768431 -22427001 + (TTA)n Simple_repeat Simple_repeat 1 32 0 4 1918 2515 67 19 177 chr1 174768462 174768987 -22426445 - L1_Mus2 LINE L1 0 6566 6125 4 1918 234 190 65 65 chr1 174769116 174769178 -22426254 - L1MEg LINE L1 -4714 1764 1703 4 1918 4641 117 39 10 chr1 174769288 174769990 -22425442 - Lx4A LINE L1 -3 7055 6334 4 1918 256 204 0 0 chr1 174770023 174770077 -22425355 + Lx9 LINE L1 7368 7421 -223 4 1918 344 110 80 153 chr1 174770107 174770145 -22425287 + Lx9 LINE L1 7505 7535 -109 4 1918 1431 54 37 11 chr1 174770145 174770332 -22425100 + B2_Mm2 SINE B2 1 192 -3 4 1918 344 110 80 153 chr1 174770332 174770443 -22424989 + Lx9 LINE L1 7536 7643 -1 4 1918 387 0 0 0 chr1 174770478 174770521 -22424911 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1918 436 331 79 68 chr1 174770588 174771414 -22424018 - L1MEg LINE L1 -4866 1612 717 4 1918 585 357 38 24 chr1 174772161 174772502 -22422930 + Lx3_Mus LINE L1 2897 3242 -2904 4 1918 397 293 90 111 chr1 174772518 174772806 -22422626 - MLT2C1 LTR ERVL -81 316 35 4 1918 426 277 50 0 chr1 174773148 174773289 -22422143 + MER3 DNA MER1_type 62 209 0 4 1918 403 88 0 0 chr1 174773694 174773751 -22421681 - U6 snRNA snRNA -30 77 21 4 1918 9698 65 13 16 chr1 174773751 174774672 -22420760 + Lx3_Mus LINE L1 4991 5908 -1101 4 1918 243 0 0 0 chr1 174774672 174774699 -22420733 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1918 9698 62 26 34 chr1 174774699 174775810 -22419622 + Lx3_Mus LINE L1 5909 7009 0 4 1918 423 321 78 24 chr1 174775882 174776048 -22419384 - MLT1A0 LTR MaLR -127 238 64 4 1918 644 319 142 67 chr1 174776058 174776521 -22418911 - MLT2B3 LTR ERVL -16 538 2 4 1918 219 227 30 15 chr1 174776674 174776741 -22418691 + GA-rich Low_complexity Low_complexity 4 71 0 4 1918 353 361 92 20 chr1 174777249 174777498 -22417934 + Lx3_Mus LINE L1 4760 5026 -1120 4 1918 705 304 16 10 chr1 174777701 174777990 -22417442 + Lx3_Mus LINE L1 5264 5555 -569 4 1918 225 344 11 0 chr1 174779525 174779618 -22415814 - L1ME3A LINE L1 -30 6143 6050 4 1918 589 241 15 8 chr1 174779634 174779768 -22415664 + RMER1B Other Other 580 714 -352 4 1918 1826 288 53 37 chr1 174779864 174780124 -22415308 + RMER1C Other Other 3 255 -1087 4 1918 621 0 0 0 chr1 174780124 174780193 -22415239 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1918 3266 228 48 40 chr1 174780193 174781036 -22414396 + RMER1C Other Other 256 1340 -2 4 1918 551 274 152 66 chr1 174781027 174781481 -22413951 - L1ME3A LINE L1 -115 6058 5566 4 1918 249 314 46 56 chr1 174781609 174781717 -22413715 + LTR16E1 LTR ERVL 2 108 -430 4 1918 430 142 28 23 chr1 174781987 174782088 -22413344 + Lx3_Mus LINE L1 5728 5826 -2056 4 1918 7086 14 0 0 chr1 174782085 174782948 -22412484 - L1Md_T LINE L1 -627 5955 5093 4 1918 5434 38 10 0 chr1 174782948 174783555 -22411877 + L1Md_T LINE L1 5970 6582 0 4 1918 550 45 0 0 chr1 174783555 174783622 -22411810 + Lx3_Mus LINE L1 5784 5850 -1159 4 1918 560 14 14 0 chr1 174783947 174784016 -22411416 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 4 1918 324 182 15 0 chr1 174784016 174784082 -22411350 - RMER1A Other Other -17 1013 947 4 1918 188 0 74 0 chr1 174784782 174784809 -22410623 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1918 259 310 14 0 chr1 174784949 174785020 -22410412 + MER57D LTR ERV1 8 79 -332 4 1918 978 228 29 19 chr1 174785042 174785252 -22410180 - Lx9 LINE L1 -1071 6573 6362 4 1918 707 240 20 0 chr1 174785245 174785395 -22410037 + Lx9 LINE L1 7268 7420 -224 4 1918 198 0 0 0 chr1 174785395 174785417 -22410015 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4 1918 365 140 18 0 chr1 174785520 174785577 -22409855 - Lx9 LINE L1 -1096 6548 6491 4 1918 549 0 0 0 chr1 174785578 174785639 -22409793 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1918 351 264 25 0 chr1 174785657 174785778 -22409654 + Lx9 LINE L1 7521 7644 0 4 1918 3030 63 0 0 chr1 174785783 174786145 -22409287 + L1_Mus1 LINE L1 6206 6567 0 4 1918 1269 245 35 15 chr1 174786439 174786779 -22408653 - Lx9 LINE L1 -67 5780 5434 4 1918 339 267 25 16 chr1 174786920 174787042 -22408390 + MER57D LTR ERV1 288 410 -1 4 1918 3171 47 0 0 chr1 174787770 174788133 -22407299 - L1Md_T LINE L1 0 6582 6220 4 1918 649 259 129 22 chr1 174788135 174788313 -22407119 - B4A SINE B4 -94 198 2 4 1918 227 211 17 17 chr1 174788804 174788862 -22406570 + L1MD LINE L1 5495 5552 -2443 4 1918 21 0 0 0 chr1 174788927 174788948 -22406484 + AT_rich Low_complexity Low_complexity 1 21 0 4 1918 873 249 121 72 chr1 174791181 174791554 -22403878 + Lx8 LINE L1 7048 7438 -35 4 1918 303 381 42 0 chr1 174791934 174792052 -22403380 - Tigger8 DNA MER2_type 0 666 544 4 1918 349 361 58 0 chr1 174792957 174793112 -22402320 - LTR53 LTR ERVL -167 352 189 4 1918 227 369 112 45 chr1 174793742 174794298 -22401134 + L2 LINE L2 2259 2851 -568 4 1918 609 276 6 52 chr1 174794825 174794997 -22400435 - RSINE1 SINE B4 0 165 2 4 1918 203 310 166 21 chr1 174795224 174795369 -22400063 - MIR SINE MIR -91 171 6 4 1918 442 294 172 17 chr1 174796173 174796399 -22399033 + B4A SINE B4 17 277 -15 4 1918 25 0 0 0 chr1 174796819 174796844 -22398588 + AT_rich Low_complexity Low_complexity 1 25 0 4 1918 1124 291 45 23 chr1 174797145 174797542 -22397890 + MLT1A1 LTR MaLR 1 406 -2 4 1918 887 273 38 102 chr1 174797758 174798150 -22397282 + MTE2a LTR MaLR 8 374 -5 4 1918 258 196 0 51 chr1 174798228 174798287 -22397145 - MTC LTR MaLR -365 56 1 4 1918 585 261 97 40 chr1 174798475 174798702 -22396730 + Ricksha_c DNA MuDR 665 904 -1144 4 1918 226 257 28 14 chr1 174799272 174799343 -22396089 + CT-rich Low_complexity Low_complexity 1 72 0 4 1918 1453 306 98 59 chr1 174799426 174800041 -22395391 - Lx7 LINE L1 -1789 5907 5215 4 1918 5483 171 16 13 chr1 174800041 174800941 -22394491 + RMER19B LTR ERVK 1 902 0 4 1918 1453 304 99 60 chr1 174800941 174801447 -22393985 - Lx7 LINE L1 -633 5214 4704 4 1918 180 77 0 0 chr1 174801481 174801507 -22393925 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1918 1481 242 71 15 chr1 174801642 174802036 -22393396 + MTD LTR MaLR 2 417 -2 4 1918 703 250 0 7 chr1 174802131 174802276 -22393156 + B1_Mur2 SINE Alu 6 149 0 4 1918 241 22 85 21 chr1 174802301 174802348 -22393084 - Lx9 LINE L1 0 7644 7595 4 1918 3501 203 54 24 chr1 174802353 174802509 -22392923 - Lx9 LINE L1 -295 7349 7198 4 1918 3436 58 0 2 chr1 174802509 174802908 -22392524 + MTB LTR MaLR 1 398 -2 4 1918 3501 203 54 24 chr1 174802908 174802977 -22392455 - Lx9 LINE L1 -447 7197 7135 4 1918 513 0 0 0 chr1 174802977 174803034 -22392398 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 4 1918 3501 203 54 24 chr1 174803034 174803569 -22391863 - Lx9 LINE L1 -510 7134 6565 4 1918 480 35 0 0 chr1 174803778 174803836 -22391596 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 4 1918 609 299 69 73 chr1 174804599 174804888 -22390544 - B4 SINE B4 0 292 5 4 1918 225 333 0 0 chr1 174805042 174805108 -22390324 - Lx9 LINE L1 -1728 5916 5851 4 1918 312 258 70 39 chr1 174805112 174805241 -22390191 - L1_Mur3 LINE L1 -1067 4813 4681 4 1918 2079 270 101 32 chr1 174805360 174806086 -22389346 + Lx8 LINE L1 6694 7469 -4 4 1918 42041 7 1 0 chr1 174808737 174815273 -22380159 - L1Md_A LINE L1 0 6582 42 4 1918 26 50 0 0 chr1 174815461 174815501 -22379931 + AT_rich Low_complexity Low_complexity 1 40 0 4 1918 1034 309 21 14 chr1 174815545 174815834 -22379598 - B4A SINE B4 -1 291 1 4 1918 1063 206 66 9 chr1 174815862 174816073 -22379359 - Lx9 LINE L1 -1044 6600 6378 4 1918 436 394 5 41 chr1 174816452 174816648 -22378784 + LTR78 LTR ERV1 436 624 -680 4 1918 219 342 65 24 chr1 174816830 174816953 -22378479 + L2a LINE L2 3299 3426 0 4 1918 675 346 28 42 chr1 174817214 174817498 -22377934 - B4A SINE B4 -6 286 7 4 1918 2907 222 42 30 chr1 174817570 174818262 -22377170 + Lx7 LINE L1 6818 7517 -179 4 1918 1453 131 5 5 chr1 174818282 174818497 -22376935 - Lx2 LINE L1 -18 6979 6765 4 1918 6893 124 15 5 chr1 174818497 174818820 -22376612 - Lx2 LINE L1 -363 6634 6309 4 1918 642 13 0 0 chr1 174818820 174818895 -22376537 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 1918 6893 127 49 5 chr1 174818895 174819762 -22375670 - Lx2 LINE L1 -689 6308 5347 4 1918 4532 132 15 7 chr1 174819753 174820492 -22374940 - Lx2 LINE L1 -1398 4479 3735 4 1918 7328 97 42 16 chr1 174820485 174822412 -22373020 - L1VL4 LINE L1 -1588 1971 1 4 1918 1154 106 0 11 chr1 174823550 174823732 -22371700 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1918 1481 100 125 4 chr1 174823740 174823980 -22371452 - L1_Mus4 LINE L1 -1 6635 6367 4 1918 333 286 11 0 chr1 174826703 174826794 -22368638 - B4A SINE B4 -200 92 1 4 1918 311 216 34 11 chr1 174827878 174827967 -22367465 - Lx3_Mus LINE L1 0 7009 6919 4 1918 276 301 122 7 chr1 174828827 174828974 -22366458 - L2 LINE L2 -1286 2133 1970 4 1918 243 271 0 119 chr1 174829351 174829460 -22365972 + MLT1A0 LTR MaLR 109 204 -204 4 1918 320 188 0 30 chr1 174829505 174829571 -22365861 + MLT1A0 LTR MaLR 256 319 -46 4 1918 260 313 12 55 chr1 174829574 174829736 -22365696 + MLT1F-int LTR MaLR 307 498 -873 4 1918 235 274 158 0 chr1 174829759 174829854 -22365578 + MLT1A1-int LTR MaLR 183 292 -1443 4 1918 667 304 58 15 chr1 174829860 174830134 -22365298 + Lx8 LINE L1 7186 7471 -2 4 1918 727 220 50 0 chr1 174830175 174830334 -22365098 - Lx9 LINE L1 -243 7401 7235 4 1918 382 186 58 0 chr1 174830339 174830425 -22365007 + Lx9 LINE L1 6904 6994 -650 4 1918 405 295 0 0 chr1 174830458 174830570 -22364862 + MLT1A1-int LTR MaLR 1608 1719 -16 4 1918 357 330 25 81 chr1 174830571 174830769 -22364663 + MLT1A1 LTR MaLR 1 187 -221 4 1918 4166 60 2 38 chr1 174830770 174831292 -22364140 + L1_Mus2 LINE L1 6063 6565 -1 4 1918 3905 143 16 3 chr1 174832304 174832873 -22362559 - Lx2B LINE L1 0 7000 6425 4 1918 709 303 51 39 chr1 174834683 174835019 -22360413 - RLTR15 LTR ERVK -16 343 4 4 1918 287 333 11 0 chr1 174835774 174835864 -22359568 + CT-rich Low_complexity Low_complexity 3 93 0 4 1918 450 94 0 0 chr1 174835884 174835948 -22359484 + (CAT)n Simple_repeat Simple_repeat 2 65 0 4 1918 3719 65 19 2 chr1 174835952 174836477 -22358955 - MT-int LTR MaLR -241 857 324 4 1918 807 319 44 31 chr1 174836861 174837238 -22358194 - Lx8 LINE L1 -925 6719 6198 4 1918 264 286 0 0 chr1 174837310 174837387 -22358045 - L1_Mur3 LINE L1 -918 4962 4886 4 1918 1148 241 47 18 chr1 174837382 174837762 -22357670 - L1_Mur3 LINE L1 -1178 4702 4312 4 1918 326 339 53 11 chr1 174837844 174838032 -22357400 - Lx9 LINE L1 -335 7309 7114 5 1918 1431 252 31 21 chr1 174838036 174838555 -22356877 - L1_Mur3 LINE L1 -1594 4286 3763 4 1918 2107 249 84 16 chr1 174838550 174839274 -22356158 - RMER1B Other Other -11 1055 112 5 1918 2468 262 89 96 chr1 174839275 174839805 -22355627 - L1_Mur3 LINE L1 -2158 3722 3146 4 1918 198 0 0 0 chr1 174839805 174839827 -22355605 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1918 2468 262 89 96 chr1 174839827 174839844 -22355588 - L1_Mur3 LINE L1 -2735 3145 3127 4 1918 189 0 0 0 chr1 174839844 174839865 -22355567 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1918 2468 262 89 96 chr1 174839865 174840624 -22354808 - L1_Mur3 LINE L1 -2754 3126 2384 4 1918 255 54 0 0 chr1 174840624 174840661 -22354771 - B1_Mm SINE Alu 0 147 111 5 1918 2468 262 89 96 chr1 174840661 174841087 -22354345 - L1_Mur3 LINE L1 -2754 2383 1966 4 1918 1568 38 14 14 chr1 174841087 174841298 -22354134 + L1Md_F3 LINE L1 6372 6582 -2 5 1918 2468 262 89 96 chr1 174841298 174841551 -22353881 - L1_Mur3 LINE L1 -3915 1965 1718 4 1918 603 60 0 0 chr1 174841551 174841635 -22353797 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1918 2468 262 89 96 chr1 174841635 174841766 -22353666 - L1_Mur3 LINE L1 -4163 1717 1583 4 1918 872 87 0 8 chr1 174841788 174841916 -22353516 + (TTCC)n Simple_repeat Simple_repeat 1 127 0 5 1918 984 248 101 0 chr1 174841916 174842194 -22353238 - Lx6 LINE L1 -3 7457 7152 5 1918 4985 208 7 10 chr1 174842186 174843788 -22351644 - Lx6 LINE L1 -1008 6452 4852 5 1918 942 70 0 27 chr1 174843796 174843893 -22351539 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 5 1918 1193 101 0 6 chr1 174843893 174844073 -22351359 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 5 1918 942 70 0 27 chr1 174844073 174844122 -22351310 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 1918 5695 147 21 16 chr1 174844123 174844345 -22351087 - Lx4A LINE L1 0 7058 6836 5 1918 765 79 0 0 chr1 174844345 174844459 -22350973 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 5 1918 5695 147 21 16 chr1 174844459 174844774 -22350658 - Lx4A LINE L1 -223 6835 6519 5 1918 2977 78 22 2 chr1 174844774 174845185 -22350247 - BGLII LTR ERVK 0 421 3 5 1918 5695 147 21 16 chr1 174845185 174845614 -22349818 - Lx4A LINE L1 -540 6518 6087 5 1918 1980 116 35 0 chr1 174845616 174845927 -22349505 - Lx4A LINE L1 -1150 5908 5587 5 1918 734 127 17 0 chr1 174845940 174846058 -22349374 + RMER6C LTR ERVK 571 690 0 5 1918 606 28 0 0 chr1 174846180 174846252 -22349180 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1918 874 179 0 0 chr1 174846252 174846392 -22349040 - B1_Mur4 SINE Alu -9 141 2 5 1918 202 411 22 0 chr1 174847248 174847338 -22348094 - L2c LINE L2 -236 3151 3060 5 1918 1434 285 68 5 chr1 174848079 174848460 -22346972 - MTD LTR MaLR -14 405 1 5 1918 518 326 122 54 chr1 174848588 174848997 -22346435 - MLT1J1 LTR MaLR -3 441 5 5 1918 679 193 0 18 chr1 174849245 174849414 -22346018 + GA-rich Low_complexity Low_complexity 1 166 0 5 1918 248 265 36 0 chr1 174849422 174849505 -22345927 + (CAGAGA)n Simple_repeat Simple_repeat 2 87 0 5 1918 279 0 0 0 chr1 174849505 174849536 -22345896 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1918 594 0 0 0 chr1 174849536 174849601 -22345831 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1919 226 294 44 0 chr1 174850382 174850450 -22344982 - ID4_ SINE ID -11 72 2 5 1919 352 295 26 18 chr1 174851114 174851228 -22344204 - LTR33B LTR ERVL 0 503 389 5 1919 257 362 163 20 chr1 174851228 174851365 -22344067 - MLT1N2 LTR MaLR 0 562 276 5 1919 680 215 215 0 chr1 174852034 174852211 -22343221 - B3 SINE B2 -1 215 1 5 1919 329 296 30 20 chr1 174852225 174852325 -22343107 + RMER15 LTR ERVL 371 471 -104 5 1919 4449 140 11 40 chr1 174852327 174853154 -22342278 - L1_Mur2 LINE L1 -878 4999 4197 5 1919 3786 152 15 3 chr1 174853153 174853825 -22341607 + L1_Mm LINE L1 4990 5669 -214 5 1919 3553 109 15 53 chr1 174853835 174854418 -22341014 + Lx LINE L1 6094 6654 0 5 1919 319 252 25 42 chr1 174854592 174854712 -22340720 + CT-rich Low_complexity Low_complexity 2 119 0 5 1919 742 206 60 45 chr1 174856168 174856420 -22339012 - Lx4B LINE L1 0 7058 6719 5 1919 16879 69 46 4 chr1 174856430 174859589 -22335843 - L1Md_F2 LINE L1 0 6582 3270 5 1919 1806 312 127 61 chr1 174859956 174860863 -22334569 + MTE-int LTR MaLR 580 1546 -34 5 1919 318 284 134 45 chr1 174861155 174861402 -22334030 - RLTR15 LTR ERVK -13 346 78 5 1919 311 211 91 136 chr1 174861381 174861557 -22333875 - RLTR15 LTR ERVK -191 168 1 5 1919 21 36 0 0 chr1 174861597 174861625 -22333807 + AT_rich Low_complexity Low_complexity 1 28 0 5 1919 252 0 0 0 chr1 174862010 174862038 -22333394 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1919 1902 256 33 31 chr1 174862845 174863393 -22332039 + Lx8 LINE L1 6869 7417 -56 5 1919 228 67 0 0 chr1 174863422 174863452 -22331980 + (CATA)n Simple_repeat Simple_repeat 3 32 0 5 1919 2263 241 137 85 chr1 174864755 174866024 -22329408 - RMER1A Other Other -1 1029 20 5 1919 507 218 23 0 chr1 174866509 174866638 -22328794 - Lx4B LINE L1 -61 6997 6771 5 1919 193 366 40 24 chr1 174866712 174866838 -22328594 + MIRb SINE MIR 25 152 -116 5 1919 256 311 15 29 chr1 174867316 174867452 -22327980 - L1MB1 LINE L1 -40 6128 5995 5 1919 598 290 15 15 chr1 174867458 174867661 -22327771 - L1MB1 LINE L1 -369 5799 5597 5 1919 946 314 15 47 chr1 174867746 174868153 -22327279 - Lx8 LINE L1 -62 7411 7018 5 1919 408 241 48 14 chr1 174868174 174868336 -22327096 - L1MB1 LINE L1 -691 5600 5423 5 1919 363 312 87 0 chr1 174868362 174868500 -22326932 + L1MC4 LINE L1 6920 7069 -973 5 1919 1043 114 6 0 chr1 174868756 174868922 -22326510 + (TTC)n Simple_repeat Simple_repeat 2 168 0 5 1919 407 194 0 9 chr1 174868945 174869054 -22326378 + CT-rich Low_complexity Low_complexity 1 108 0 5 1919 30710 85 31 17 chr1 174869100 174872579 -22322853 + Lx3_Mus LINE L1 707 4293 -1593 5 1919 2551 49 9 47 chr1 174872579 174872919 -22322513 + IAPLTR2b LTR ERVK 1 327 0 5 1919 30710 88 20 13 chr1 174872919 174875664 -22319768 + Lx3_Mus LINE L1 4294 7009 0 5 1919 393 39 0 0 chr1 174876161 174876212 -22319220 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1919 198 118 0 0 chr1 174876465 174876499 -22318933 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1919 487 291 70 45 chr1 174877120 174877414 -22318018 + Lx7 LINE L1 5474 5758 -542 5 1919 11576 105 3 3 chr1 174877683 174878503 -22316929 + L1_Mus2 LINE L1 4114 4934 -949 5 1919 1324 89 0 0 chr1 174878503 174878683 -22316749 - L1_Mus2 LINE L1 0 6566 6387 5 1919 11576 86 13 20 chr1 174878683 174880326 -22315106 + L1_Mus2 LINE L1 4935 6566 0 5 1919 255 384 93 4 chr1 174881524 174881749 -22313683 - MIR SINE MIR -9 253 9 5 1919 407 363 41 26 chr1 174882351 174882546 -22312886 - MER63A DNA AcHobo -12 198 1 5 1919 331 284 40 0 chr1 174883324 174883398 -22312034 + ID4_ SINE ID 1 77 -6 5 1919 289 315 67 0 chr1 174883398 174883413 -22312019 + ID_B1 SINE B4 1 95 -129 5 1919 252 261 14 55 chr1 174883532 174883605 -22311827 - B2_Mm2 SINE B2 -124 71 2 5 1919 991 267 80 22 chr1 174883661 174884199 -22311233 - L1MC LINE L1 -413 5751 5181 5 1919 324 392 25 25 chr1 174884215 174884419 -22311013 - L1M5 LINE L1 -1013 5133 4930 5 1919 341 343 9 0 chr1 174884940 174885048 -22310384 - PB1D10 SINE Alu 0 117 9 5 1919 22 56 0 0 chr1 174885223 174885259 -22310173 + AT_rich Low_complexity Low_complexity 1 36 0 5 1919 198 234 62 0 chr1 174885501 174885565 -22309867 - L2 LINE L2 -1279 2140 2073 5 1919 360 111 0 0 chr1 174885792 174885855 -22309577 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1919 353 271 40 40 chr1 174885870 174885970 -22309462 - ID_B1 SINE B4 -21 203 104 5 1919 1319 19 6 0 chr1 174888614 174888772 -22306660 + (TG)n Simple_repeat Simple_repeat 2 160 0 5 1919 984 315 126 29 chr1 174889402 174889991 -22305441 - Lx8 LINE L1 -5 7468 6823 5 1919 394 277 108 0 chr1 174890023 174890171 -22305261 + Lx8 LINE L1 6383 6546 -927 5 1919 1180 76 6 11 chr1 174890341 174890515 -22304917 + (TCTCC)n Simple_repeat Simple_repeat 3 175 0 5 1919 252 383 78 0 chr1 174891040 174891168 -22304264 - L2b LINE L2 0 3375 3238 5 1919 183 114 0 0 chr1 174891184 174891219 -22304213 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1919 4899 39 3 2 chr1 174891270 174891861 -22303571 + L1Md_F2 LINE L1 5991 6582 0 5 1919 451 310 84 124 chr1 174892986 174893215 -22302217 + ORR1E LTR MaLR 9 256 -103 5 1919 3170 53 8 0 chr1 174893215 174893608 -22301824 + MTA_Mm LTR MaLR 1 396 0 5 1919 451 310 84 124 chr1 174893608 174893724 -22301708 + ORR1E LTR MaLR 257 340 -19 5 1919 213 109 36 18 chr1 174893863 174893919 -22301513 + (TTG)n Simple_repeat Simple_repeat 2 58 0 5 1919 239 302 113 5 chr1 174894939 174895152 -22300280 + L1MEc LINE L1 1095 1330 -5085 5 1919 575 252 50 7 chr1 174895305 174895445 -22299987 + RSINE1 SINE B4 4 149 -16 5 1919 253 286 10 0 chr1 174895725 174895823 -22299609 + L1MEc LINE L1 1792 1890 -4510 5 1919 1202 256 69 88 chr1 174896259 174897039 -22298393 + RMER12 LTR ERVK 1 748 -1100 5 1919 3331 43 5 0 chr1 174897063 174897457 -22297975 - MTA_Mm LTR MaLR 0 396 1 5 1919 314 232 53 170 chr1 174897530 174897566 -22297866 + RMER12 LTR ERVK 959 989 -333 5 1919 1263 94 0 0 chr1 174897566 174897746 -22297686 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 1919 314 232 53 170 chr1 174897746 174897880 -22297552 + RMER12 LTR ERVK 990 1109 -213 5 1919 6286 105 60 4 chr1 174897880 174898921 -22296511 - Lx LINE L1 -8 6646 5548 5 1919 491 237 46 13 chr1 174898926 174899081 -22296351 + RMER12 LTR ERVK 1111 1322 0 5 1919 567 303 89 53 chr1 174899257 174899560 -22295872 - LTR41 LTR ERVL -446 322 9 5 1919 268 278 33 0 chr1 174900368 174900458 -22294974 + L1MEc LINE L1 1066 1158 -5242 5 1919 2047 114 9 0 chr1 174900547 174900862 -22294570 + L1VL2 LINE L1 637 954 -5680 5 1919 34818 35 2 9 chr1 174900864 174906245 -22289187 + L1Md_T LINE L1 245 5586 -297 5 1919 8343 38 1 2 chr1 174906245 174907240 -22288192 + L1Md_T LINE L1 5587 6580 -2 5 1919 7331 160 130 2 chr1 174907261 174909318 -22286114 + L1VL2 LINE L1 940 3264 -2622 5 1919 4139 137 40 6 chr1 174909317 174910108 -22285324 - L1_Mur2 LINE L1 -516 5361 4544 5 1919 5593 123 19 17 chr1 174910103 174910119 -22285313 - L1_Mur2 LINE L1 -3652 2225 2210 5 1919 486 0 0 0 chr1 174910119 174910173 -22285259 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1919 5593 131 21 21 chr1 174910173 174911495 -22283937 - L1_Mur2 LINE L1 -3668 2209 888 5 1919 258 241 35 35 chr1 174911875 174911961 -22283471 + MTD LTR MaLR 1 86 -310 5 1919 2854 184 33 43 chr1 174912189 174912764 -22282668 - RMER15 LTR ERVL 0 575 7 5 1919 635 250 27 7 chr1 174912770 174912919 -22282513 + MTD LTR MaLR 268 419 0 5 1919 316 303 131 36 chr1 174913033 174913062 -22282370 + L1MEc LINE L1 1728 1754 -4646 5 1919 1964 169 94 0 chr1 174913062 174913422 -22282010 + ORR1B1 LTR MaLR 1 394 0 5 1919 316 303 131 36 chr1 174913422 174913529 -22281903 + L1MEc LINE L1 1755 1877 -4523 5 1919 226 341 0 117 chr1 174913555 174913658 -22281774 + RSINE1 SINE B4 2 92 -73 5 1919 788 275 34 0 chr1 174913660 174913867 -22281565 + B3 SINE B2 1 214 -2 5 1919 566 304 91 31 chr1 174914114 174914819 -22280613 + L1MEc LINE L1 2027 2766 -3553 5 1919 1730 299 132 38 chr1 174914964 174916317 -22279115 + Lx8 LINE L1 5921 7472 -1 5 1919 1118 134 137 8 chr1 174916314 174916570 -22278862 + Lx9 LINE L1 7354 7642 -2 5 1919 381 221 139 40 chr1 174916604 174916755 -22278677 + L1MEc LINE L1 2912 3077 -3242 5 1919 453 331 8 0 chr1 174916794 174916921 -22278511 + RSINE1 SINE B4 2 129 -36 5 1919 335 327 158 19 chr1 174916953 174917212 -22278220 + L1MEc LINE L1 4705 4999 -1320 5 1919 456 259 85 34 chr1 174917298 174917534 -22277898 - L1M4 LINE L1 -838 5308 5061 5 1919 474 265 204 12 chr1 174917722 174917894 -22277538 - B3 SINE B2 -11 205 1 6 1919 534 283 73 0 chr1 174918428 174918647 -22276785 + L1M5 LINE L1 2768 3002 -3144 6 1919 263 167 0 0 chr1 174918766 174918814 -22276618 - L1M5 LINE L1 -337 5842 5795 6 1919 388 262 373 28 chr1 174921919 174922200 -22273232 - L1M5 LINE L1 -2196 3950 3573 6 1919 676 222 106 0 chr1 174922310 174922490 -22272942 - Tigger7 DNA MER2_type -55 2436 2238 6 1919 908 277 111 10 chr1 174922553 174922859 -22272573 - Tigger7 DNA MER2_type -2145 346 10 6 1919 304 364 6 38 chr1 174923030 174923187 -22272245 + RSINE1 SINE B4 2 153 -12 6 1919 717 307 58 48 chr1 174923267 174923673 -22271759 - L1M5 LINE L1 -2871 3275 2865 6 1919 666 267 38 16 chr1 174923673 174923856 -22271576 + B3A SINE B2 1 187 -11 6 1919 938 34 0 8 chr1 174923963 174924082 -22271350 + (TTCTC)n Simple_repeat Simple_repeat 2 119 0 6 1919 666 0 0 0 chr1 174924082 174924155 -22271277 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 6 1919 369 207 0 0 chr1 174924396 174924478 -22270954 + Lx9 LINE L1 7560 7641 -3 6 1919 423 284 119 0 chr1 174924533 174924667 -22270765 - MTEa LTR MaLR -10 369 220 6 1919 622 291 62 31 chr1 174924697 174924710 -22270722 - MTEa LTR MaLR -144 235 223 6 1919 1488 24 0 0 chr1 174924710 174924965 -22270467 + (CATCC)n Simple_repeat Simple_repeat 1 255 0 6 1919 622 291 62 31 chr1 174924965 174925145 -22270287 - MTEa LTR MaLR -157 222 36 6 1919 250 305 0 0 chr1 174925264 174925323 -22270109 + polypyrimidine Low_complexity Low_complexity 2 60 0 6 1919 823 173 0 11 chr1 174925329 174925504 -22269928 + CT-rich Low_complexity Low_complexity 4 176 0 6 1919 214 296 82 75 chr1 174925505 174925529 -22269903 - B4A SINE B4 -46 246 100 6 1919 310 311 66 0 chr1 174925529 174925651 -22269781 - B1F SINE Alu -5 144 15 6 1919 321 26 0 0 chr1 174926419 174926457 -22268975 + (CATA)n Simple_repeat Simple_repeat 1 38 0 6 1919 375 275 23 0 chr1 174926478 174926611 -22268821 - L1MA4 LINE L1 -370 5930 5807 6 1919 1133 86 6 0 chr1 174926806 174926969 -22268463 + (TTTTC)n Simple_repeat Simple_repeat 1 164 0 6 1919 345 140 0 0 chr1 174926971 174927028 -22268404 + (TCTCC)n Simple_repeat Simple_repeat 3 59 0 6 1919 332 260 0 57 chr1 174927037 174927163 -22268269 - L1M3 LINE L1 -573 5595 5476 6 1919 23 33 0 0 chr1 174927182 174927212 -22268220 + AT_rich Low_complexity Low_complexity 1 30 0 6 1919 1492 299 86 35 chr1 174927918 174928631 -22266801 - Lx8 LINE L1 -5 7468 6720 6 1919 3812 88 1 0 chr1 174928625 174929362 -22266070 - L1_Mus3 LINE L1 -600 6038 5301 6 1919 3979 82 26 6 chr1 174929366 174929903 -22265529 + L1_Mus3 LINE L1 6088 6635 -3 6 1919 1850 178 34 59 chr1 174929920 174930308 -22265124 - ORR1C1 LTR MaLR 0 378 1 6 1919 1618 297 33 31 chr1 174930308 174930823 -22264609 - Lx8 LINE L1 -754 6719 6204 6 1919 366 61 0 0 chr1 174930870 174930919 -22264513 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1919 362 318 29 58 chr1 174931084 174931221 -22264211 + MTD LTR MaLR 79 211 -208 6 1919 8600 24 0 3 chr1 174931221 174932285 -22263147 - L1Md_T LINE L1 -851 5032 3972 6 1919 4590 14 2 0 chr1 174932282 174932835 -22262597 + L1Md_T LINE L1 5033 5586 -297 6 1919 8539 31 0 0 chr1 174932835 174933831 -22261601 + L1Md_T LINE L1 5587 6582 0 6 1919 1051 224 9 27 chr1 174933832 174934052 -22261380 + MTD LTR MaLR 204 419 0 6 1919 522 0 0 0 chr1 174934366 174934424 -22261008 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1919 594 300 43 37 chr1 174935126 174935313 -22260119 + B4 SINE B4 2 189 -103 6 1919 565 260 93 31 chr1 174935894 174936216 -22259216 + L1MC2 LINE L1 5994 6335 -9 6 1919 29 28 0 0 chr1 174936536 174936572 -22258860 + AT_rich Low_complexity Low_complexity 1 36 0 6 1919 470 46 15 0 chr1 174936588 174936653 -22258779 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 1919 1640 77 34 0 chr1 174937549 174937784 -22257648 + L1_Mus1 LINE L1 6324 6566 -1 6 1919 1918 210 20 5 chr1 174937860 174938267 -22257165 - Lx6 LINE L1 -427 7033 6621 6 1919 281 200 40 0 chr1 174938483 174938558 -22256874 - Lx9 LINE L1 -176 7468 7391 6 1919 242 351 83 38 chr1 174938588 174938721 -22256711 - MLT1F1 LTR MaLR -93 486 348 6 1919 229 205 0 0 chr1 174938986 174939025 -22256407 - U1 snRNA snRNA -126 39 1 6 1919 438 20 0 0 chr1 174939055 174939106 -22256326 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1919 351 0 0 0 chr1 174939106 174939144 -22256288 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1919 513 303 70 32 chr1 174939176 174939333 -22256099 - RSINE1 SINE B4 0 165 3 6 1919 369 324 50 29 chr1 174939333 174939472 -22255960 - MLT1F1 LTR MaLR -427 142 1 6 1919 333 330 28 0 chr1 174940159 174940268 -22255164 - MER2B DNA MER2_type -214 122 11 6 1919 244 334 165 73 chr1 174940688 174941124 -22254308 + L2a LINE L2 2949 3424 -2 6 1919 184 342 38 50 chr1 174941179 174941259 -22254173 + L3b LINE CR1 372 450 -32 6 1919 2105 106 47 28 chr1 174942294 174942615 -22252817 + ORR1A2 LTR MaLR 1 327 0 6 1919 8848 146 76 31 chr1 174942615 174944331 -22251101 + ORR1A2-int LTR MaLR 1 1792 0 6 1919 2062 142 36 3 chr1 174944331 174944662 -22250770 + ORR1A2 LTR MaLR 1 342 -4 6 1919 189 0 0 0 chr1 174945101 174945122 -22250310 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1919 336 298 44 44 chr1 174945730 174945867 -22249565 - MLT1C LTR MaLR -2 465 329 6 1919 200 360 32 63 chr1 174946067 174946162 -22249270 + MIR SINE MIR 38 129 -79 6 1919 183 80 0 0 chr1 174948480 174948505 -22246927 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 6 1919 885 211 14 9 chr1 174948513 174948728 -22246704 - Lx9 LINE L1 -183 7461 7246 6 1919 23 33 0 0 chr1 174949540 174949570 -22245862 + AT_rich Low_complexity Low_complexity 1 30 0 6 1919 332 358 48 0 chr1 174949718 174949883 -22245549 - ERVL-E-int LTR ERVL -1304 4363 4191 6 1919 288 275 50 0 chr1 174949964 174950044 -22245388 - MTEa LTR MaLR -6 373 290 6 1919 603 0 0 0 chr1 174950210 174950277 -22245155 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1919 2052 144 5 123 chr1 174950773 174951202 -22244230 - ORR1C1 LTR MaLR 0 378 1 6 1919 271 424 0 62 chr1 174951379 174951555 -22243877 - LTR33B LTR ERVL -317 186 22 6 1919 808 275 36 14 chr1 174951872 174952149 -22243283 + MER33 DNA MER1_type 41 323 -1 6 1919 236 314 182 48 chr1 174952692 174952923 -22242509 - LTR85a LTR Gypsy? -440 262 1 6 1919 488 18 0 0 chr1 174952985 174953041 -22242391 + (GAA)n Simple_repeat Simple_repeat 2 57 0 6 1919 865 171 11 0 chr1 174953041 174953216 -22242216 + GA-rich Low_complexity Low_complexity 2 178 0 6 1919 285 287 92 15 chr1 174953679 174953810 -22241622 - MIRb SINE MIR -37 231 91 6 1919 1350 232 79 3 chr1 174954431 174954773 -22240659 + ORR1D2 LTR MaLR 3 370 0 6 1919 328 240 29 20 chr1 174954816 174954918 -22240514 + B4A SINE B4 1 103 -189 6 1919 522 0 0 0 chr1 174955056 174955114 -22240318 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 6 1919 830 315 78 13 chr1 174955301 174955607 -22239825 - MLT1A0 LTR MaLR -20 345 20 6 1919 272 121 35 0 chr1 174955634 174955692 -22239740 + (TTAAA)n Simple_repeat Simple_repeat 1 60 0 6 1919 1075 206 14 0 chr1 174955698 174955907 -22239525 - B3 SINE B2 -3 213 2 6 1919 213 39 0 0 chr1 174956197 174956223 -22239209 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1919 254 365 42 65 chr1 174956731 174956948 -22238484 - MER58A DNA MER1_type -12 212 1 6 1919 192 342 77 6 chr1 174956948 174957104 -22238328 - L2b LINE L2 -340 3086 2920 6 1919 537 284 0 7 chr1 174957266 174957408 -22238024 + B1F SINE Alu 1 141 -8 6 1919 6227 104 31 4 chr1 174959433 174959543 -22235889 - Lx2 LINE L1 -3 6994 6884 6 1919 219 69 0 0 chr1 174959543 174959572 -22235860 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 6 1919 6227 104 31 4 chr1 174959572 174960383 -22235049 - Lx2 LINE L1 -114 6883 6049 6 1919 1508 328 44 6 chr1 174960594 174961134 -22234298 - Tigger7 DNA MER2_type -1887 604 44 6 1919 2320 109 0 0 chr1 174961774 174962122 -22233310 - L1_Mm LINE L1 -648 5235 4888 6 1919 3575 64 0 13 chr1 174962123 174962583 -22232849 + L1_Mus2 LINE L1 6113 6566 0 6 1919 465 282 98 5 chr1 174962611 174962825 -22232607 + L1MD LINE L1 5057 5290 -856 6 1919 509 366 104 21 chr1 174963024 174963457 -22231975 + L1MD1 LINE L1 831 1299 -5334 6 1919 689 301 73 49 chr1 174963543 174963933 -22231499 + L1MD1 LINE L1 5196 5599 -938 6 1919 4011 172 31 18 chr1 174963933 174964710 -22230722 - Lx4B LINE L1 -6 7052 6266 6 1919 689 301 73 49 chr1 174964710 174964787 -22230645 + L1MD1 LINE L1 5600 5674 -863 6 1919 923 316 72 56 chr1 174964961 174965857 -22229575 + L1MD1 LINE L1 5723 6633 0 6 1919 1162 288 117 21 chr1 174965899 174966559 -22228873 + Charlie5 DNA MER1_type 971 1693 -931 6 1919 1307 238 151 0 chr1 174966949 174967306 -22228126 - Lx5 LINE L1 -1 7049 6639 6 1919 241 246 137 37 chr1 174967764 174967954 -22227478 - L1MCb LINE L1 -2060 4504 4296 6 1919 483 270 36 14 chr1 174967971 174968110 -22227322 - ID_B1 SINE B4 -3 221 80 6 1919 335 302 35 0 chr1 174968129 174968245 -22227187 - PB1D9 SINE Alu 0 120 1 6 1919 563 173 14 14 chr1 174968332 174968473 -22226959 + (CATA)n Simple_repeat Simple_repeat 1 141 0 6 1919 375 250 31 52 chr1 174968492 174968589 -22226843 - B3A SINE B2 -83 115 21 6 1919 815 281 58 20 chr1 174968619 174969171 -22226261 - L1MCb LINE L1 -2644 3920 3345 6 1919 227 330 53 35 chr1 174969190 174969303 -22226129 + PB1D7 SINE Alu 1 115 -5 6 1919 680 276 74 33 chr1 174969305 174969737 -22225695 - L1MCb LINE L1 -3229 3335 2879 6 1919 572 244 74 0 chr1 174970032 174970167 -22225265 - B1_Mur1 SINE Alu 0 149 5 6 1919 413 297 121 78 chr1 174970516 174971410 -22224022 - L1MCb LINE L1 -4612 2139 1208 6 1919 789 11 0 0 chr1 174971410 174971500 -22223932 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 6 1919 2598 248 8 15 chr1 174971514 174972129 -22223303 - Lx5 LINE L1 0 7050 6440 6 1919 805 161 0 0 chr1 174972140 174972277 -22223155 + Lx5 LINE L1 6288 6424 -626 6 1919 642 303 51 40 chr1 174972695 174973060 -22222372 - L1M3 LINE L1 -870 5273 4873 6 1919 4991 52 0 2 chr1 174973060 174973673 -22221759 - L1Md_F2 LINE L1 -12 6570 5959 6 1919 642 289 29 46 chr1 174973673 174973816 -22221616 - L1M3 LINE L1 -1266 4877 4740 6 1919 314 278 0 18 chr1 174973796 174973918 -22221514 + L1MA4A LINE L1 5823 5942 -237 6 1919 21 71 0 0 chr1 174974039 174974081 -22221351 + AT_rich Low_complexity Low_complexity 1 42 0 6 1919 850 319 58 35 chr1 174974109 174974369 -22221063 + B4A SINE B4 7 272 -20 6 1919 623 287 122 39 chr1 174974621 174975087 -22220345 - L1MCb LINE L1 -6018 733 67 6 1919 188 268 0 0 chr1 174976204 174976245 -22219187 + MIRc SINE MIR 163 203 -65 6 1919 7865 38 4 0 chr1 174977247 174978870 -22216562 - L1Md_F3 LINE L1 -14 6570 4941 6 1919 5369 44 0 0 chr1 174978864 174979551 -22215881 + L1Md_F3 LINE L1 4260 4946 -937 6 1920 824 58 0 24 chr1 174981353 174981477 -22213955 + L1Md_F2 LINE L1 6459 6579 -3 6 1920 448 97 43 11 chr1 174981916 174982010 -22213422 + (TC)n Simple_repeat Simple_repeat 2 98 0 6 1920 344 319 0 25 chr1 174982275 174982394 -22213038 + PB1D10 SINE Alu 2 117 0 7 1920 195 351 117 0 chr1 174984763 174984857 -22210575 + L3b LINE CR1 121 225 -257 7 1920 489 34 0 0 chr1 174985027 174985086 -22210346 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 7 1920 1302 44 0 0 chr1 174985086 174985245 -22210187 - B2_Mm1t SINE B2 -33 160 2 7 1920 387 113 0 0 chr1 174986072 174986134 -22209298 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1920 188 239 0 21 chr1 174987307 174987354 -22208078 - MIRb SINE MIR -69 199 154 7 1920 281 301 71 24 chr1 174987764 174987849 -22207583 + B4A SINE B4 200 288 -4 7 1920 432 161 0 0 chr1 174987859 174987940 -22207492 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 1920 5188 219 68 21 chr1 174988022 174989378 -22206054 - Lx7 LINE L1 0 7696 6278 7 1920 380 37 19 0 chr1 174989413 174989467 -22205965 + (TATG)n Simple_repeat Simple_repeat 1 55 0 7 1920 417 147 0 0 chr1 174989504 174989599 -22205833 + (GA)n Simple_repeat Simple_repeat 1 95 0 7 1920 556 291 22 0 chr1 174989614 174989748 -22205684 - RSINE1 SINE B4 -26 139 3 7 1920 25 51 0 0 chr1 174989789 174989828 -22205604 + AT_rich Low_complexity Low_complexity 1 39 0 7 1920 211 305 89 41 chr1 174990391 174990514 -22204918 - MIRc SINE MIR -92 176 48 7 1920 350 380 61 24 chr1 174990994 174991207 -22204225 + MIR SINE MIR 26 246 -16 7 1920 524 322 86 22 chr1 174991449 174991681 -22203751 - LTR16A1 LTR ERVL -4 452 206 7 1920 292 347 24 8 chr1 174992845 174992970 -22202462 + MIRb SINE MIR 124 250 -18 7 1920 5776 255 62 30 chr1 174993306 174994362 -22201070 - Lx6 LINE L1 0 7460 6363 7 1920 756 0 0 0 chr1 174994362 174994446 -22200986 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1920 5776 255 62 30 chr1 174994446 174995117 -22200315 - Lx6 LINE L1 -1098 6362 5677 7 1920 813 266 11 0 chr1 174996340 174996528 -22198904 - B3 SINE B2 0 216 27 7 1920 520 241 83 0 chr1 174997971 174998116 -22197316 + Lx4B LINE L1 6898 7054 -4 7 1920 24 0 0 0 chr1 174999027 174999051 -22196381 + AT_rich Low_complexity Low_complexity 1 24 0 7 1920 484 293 39 47 chr1 174999290 174999419 -22196013 + RSINE1 SINE B4 1 128 -37 7 1920 418 381 35 6 chr1 174999462 174999631 -22195801 + MIR SINE MIR 20 193 -69 7 1920 570 288 168 64 chr1 175000584 175001495 -22193937 - HAL1 LINE L1 -92 2415 1410 1 1920 606 14 0 0 chr1 175001892 175001963 -22193469 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1920 522 0 0 0 chr1 175001963 175002020 -22193412 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1920 3687 217 75 34 chr1 175002141 175002273 -22193159 - Lx7 LINE L1 0 7696 7572 4 1920 189 0 0 0 chr1 175002273 175002294 -22193138 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1920 3687 217 75 34 chr1 175002294 175003115 -22192317 - Lx7 LINE L1 -125 7571 6705 4 1920 1686 121 4 4 chr1 175003152 175003417 -22192015 - L1_Mus4 LINE L1 -1 6635 6371 6 1920 2751 58 0 0 chr1 175003417 175003763 -22191669 + L1_Mus4 LINE L1 6025 6370 -266 6 1920 2452 224 54 9 chr1 175003757 175004315 -22191117 - Lx7 LINE L1 -1104 6592 6010 4 1920 806 306 13 0 chr1 175004434 175004663 -22190769 - LTR40b LTR ERVL -222 240 9 7 1920 186 43 0 0 chr1 175006265 175006288 -22189144 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1920 184 150 48 48 chr1 175006315 175006357 -22189075 + MIRm SINE MIR 232 273 -3 9 1920 485 359 40 5 chr1 175006632 175006856 -22188576 - MIR SINE MIR -21 241 10 1 1920 236 321 0 0 chr1 175007898 175007951 -22187481 - B4 SINE B4 -6 286 234 1 1920 192 97 0 0 chr1 175007963 175007994 -22187438 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1920 745 290 40 40 chr1 175008005 175008228 -22187204 - B4 SINE B4 -69 223 1 1 1920 343 343 23 12 chr1 175008242 175008413 -22187019 - MIRc SINE MIR -15 253 81 1 1920 387 0 0 0 chr1 175008921 175008964 -22186468 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1920 3018 162 79 46 chr1 175009726 175010394 -22185038 + RMER6C LTR ERVK 1 690 0 1 1920 3473 238 105 41 chr1 175010399 175011642 -22183790 + RMER1A Other Other 1 1020 -10 1 1920 562 201 117 10 chr1 175011836 175012032 -22183400 - Lx9 LINE L1 -1 7643 7427 1 1920 7413 82 40 3 chr1 175012237 175013129 -22182303 + L1_Mus3 LINE L1 5453 6368 -270 1 1920 519 17 0 0 chr1 175013129 175013189 -22182243 + (CAAAA)n Simple_repeat Simple_repeat 4 63 0 1 1920 7413 75 45 3 chr1 175013189 175013439 -22181993 + L1_Mus3 LINE L1 6369 6638 0 1 1920 630 287 86 53 chr1 175013556 175013799 -22181633 + MTE-int LTR MaLR 913 1163 -417 2 1920 640 276 80 9 chr1 175013809 175013845 -22181587 + MTE2a LTR MaLR 151 190 -189 2 1920 201 74 0 0 chr1 175013845 175013872 -22181560 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 2 1920 640 276 80 9 chr1 175013872 175014047 -22181385 + MTE2a LTR MaLR 191 376 -3 2 1920 288 308 0 0 chr1 175014050 175014115 -22181317 - B4A SINE B4 -225 67 3 2 1920 735 230 30 30 chr1 175014207 175014373 -22181059 + Lx9 LINE L1 7230 7395 -249 2 1920 244 296 35 0 chr1 175014440 175014582 -22180850 - L1M2 LINE L1 -4004 2845 2699 2 1920 522 0 0 0 chr1 175014635 175014693 -22180739 + (TCC)n Simple_repeat Simple_repeat 3 60 0 2 1920 326 328 104 37 chr1 175014708 175015142 -22180290 - L1M2 LINE L1 -4250 2599 2137 2 1920 1137 332 73 44 chr1 175015370 175015915 -22179517 - Lx5 LINE L1 -21 7029 6469 2 1920 656 274 93 10 chr1 175015904 175016194 -22179238 - Lx5 LINE L1 -687 6363 6027 2 1920 2136 192 63 31 chr1 175016195 175016705 -22178727 - Lx5 LINE L1 -531 5346 4821 2 1920 261 0 0 0 chr1 175016706 175016735 -22178697 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1920 11945 206 74 13 chr1 175016753 175018533 -22176899 - L1_Mur2 LINE L1 -519 5361 3485 2 1920 198 0 0 0 chr1 175018533 175018555 -22176877 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 1920 11945 206 74 13 chr1 175018555 175019162 -22176270 - L1_Mur2 LINE L1 -2396 3484 2806 2 1920 748 20 0 20 chr1 175019162 175019262 -22176170 + (TTTTG)n Simple_repeat Simple_repeat 4 101 0 3 1920 11945 206 74 13 chr1 175019262 175019928 -22175504 - L1_Mur2 LINE L1 -3075 2805 2123 2 1920 6880 43 0 0 chr1 175020589 175021420 -22174012 - L1Md_T LINE L1 -3 6579 5749 3 1920 2646 246 62 49 chr1 175021491 175022544 -22172888 + RMER1B Other Other 2 944 -122 3 1920 216 0 0 0 chr1 175022544 175022568 -22172864 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1920 2646 226 101 16 chr1 175022568 175022671 -22172761 + RMER1B Other Other 945 1055 -11 3 1920 1261 217 50 37 chr1 175022681 175023374 -22172058 - L1_Mur2 LINE L1 -4339 1538 895 2 1920 216 86 0 0 chr1 175023455 175023490 -22171942 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1920 374 0 22 0 chr1 175023723 175023769 -22171663 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1920 998 333 108 32 chr1 175023964 175024519 -22170913 - Lx8 LINE L1 -72 7401 6805 3 1920 184 268 40 40 chr1 175025103 175025177 -22170255 + L3 LINE CR1 956 1029 -3460 3 1920 410 190 81 23 chr1 175025418 175025504 -22169928 - B4A SINE B4 0 292 202 3 1920 189 0 0 0 chr1 175025540 175025561 -22169871 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1920 585 0 0 0 chr1 175025561 175025625 -22169807 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1920 273 98 0 0 chr1 175026993 175027034 -22168398 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1920 25 0 0 0 chr1 175027161 175027186 -22168246 + AT_rich Low_complexity Low_complexity 1 25 0 4 1920 891 56 0 0 chr1 175030543 175030650 -22164782 + L1Md_F2 LINE L1 5479 5585 -298 4 1920 7824 57 4 3 chr1 175030651 175031645 -22163787 + L1Md_F2 LINE L1 5587 6581 -1 4 1920 1386 49 11 0 chr1 175032228 175032494 -22162938 + (TCTA)n Simple_repeat Simple_repeat 1 268 0 4 1920 441 0 0 0 chr1 175032812 175032861 -22162571 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 1920 364 289 147 19 chr1 175033063 175033223 -22162209 + B3A SINE B2 15 185 -31 4 1920 270 0 0 0 chr1 175033230 175033260 -22162172 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1920 685 39 39 0 chr1 175033261 175033364 -22162068 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 4 1920 22 35 0 0 chr1 175033570 175033599 -22161833 + AT_rich Low_complexity Low_complexity 1 29 0 5 1920 308 375 118 11 chr1 175034300 175034572 -22160860 - L1M5 LINE L1 -1150 4996 4696 5 1920 282 29 0 0 chr1 175034633 175034668 -22160764 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 1920 525 32 0 0 chr1 175034689 175034752 -22160680 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1920 502 312 101 17 chr1 175034869 175035107 -22160325 - MER77 LTR ERVL -63 544 287 5 1920 378 107 0 0 chr1 175035704 175035760 -22159672 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1920 433 287 108 42 chr1 175035952 175036233 -22159199 - L1MC4 LINE L1 -1022 7020 6665 5 1920 252 167 0 0 chr1 175036726 175036774 -22158658 + (TTG)n Simple_repeat Simple_repeat 3 50 0 5 1920 771 11 0 0 chr1 175036776 175036864 -22158568 + (TTC)n Simple_repeat Simple_repeat 3 90 0 5 1920 21 0 0 0 chr1 175036983 175037004 -22158428 + AT_rich Low_complexity Low_complexity 1 21 0 5 1920 379 60 45 0 chr1 175037004 175037071 -22158361 - Lx3_Mus LINE L1 0 7009 6940 6 1920 3289 80 10 30 chr1 175037071 175037564 -22157868 + Lx3_Mus LINE L1 5706 6188 -821 6 1920 2968 302 53 60 chr1 175037704 175038412 -22157020 + Lx8 LINE L1 6092 6790 -683 6 1920 644 282 30 0 chr1 175038412 175038614 -22156818 - B3 SINE B2 -6 210 3 6 1920 2968 302 53 60 chr1 175038614 175039159 -22156273 + Lx8 LINE L1 6791 7336 -137 6 1920 34129 68 3 8 chr1 175039871 175045075 -22150357 + L1Md_F3 LINE L1 411 5586 -297 6 1920 8343 34 0 8 chr1 175045076 175046081 -22149351 + L1Md_F3 LINE L1 5588 6584 0 6 1920 229 261 157 13 chr1 175046199 175046358 -22149074 - L1M4 LINE L1 -752 5394 5213 6 1920 23 0 0 0 chr1 175046766 175046789 -22148643 + AT_rich Low_complexity Low_complexity 1 23 0 6 1920 198 0 0 0 chr1 175046917 175046939 -22148493 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1920 373 297 0 56 chr1 175046942 175047049 -22148383 - PB1D7 SINE Alu 0 120 20 6 1920 352 330 32 88 chr1 175047366 175047582 -22147850 + L2 LINE L2 1221 1424 -1995 6 1920 4775 148 28 1 chr1 175047682 175048445 -22146987 - Lx2B LINE L1 -5 6995 6213 7 1920 1315 170 16 0 chr1 175048445 175048698 -22146734 + Lx2B LINE L1 6026 6282 -718 7 1920 318 204 107 36 chr1 175048850 175048960 -22146472 + MTB_Mm LTR MaLR 1 118 -301 7 1920 377 233 369 20 chr1 175048960 175049109 -22146323 - MTD LTR MaLR -2 417 217 7 1920 443 221 54 58 chr1 175049107 175049294 -22146138 + MTC-int LTR MaLR 578 724 -534 7 1920 561 272 93 10 chr1 175049299 175049551 -22145881 + MTB_Mm LTR MaLR 109 419 0 7 1920 296 314 99 37 chr1 175049567 175049729 -22145703 + L2 LINE L2 1771 1942 -1477 6 1920 498 39 0 38 chr1 175049736 175049816 -22145616 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1920 251 227 30 61 chr1 175049816 175049980 -22145452 + (TATATG)n Simple_repeat Simple_repeat 3 161 0 7 1920 315 0 0 0 chr1 175049986 175050021 -22145411 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1920 3137 185 5 29 chr1 175050144 175050735 -22144697 + RLTR20B3 LTR ERVK 1 577 0 7 1920 272 281 228 15 chr1 175050948 175051150 -22144282 + L2 LINE L2 2022 2266 -1153 6 1920 5022 195 59 14 chr1 175051231 175052453 -22142979 - Lx4B LINE L1 -10 6990 5698 7 1920 249 306 73 59 chr1 175052442 175052661 -22142771 + Lx8 LINE L1 7245 7466 -7 7 1920 566 309 124 4 chr1 175052799 175053049 -22142383 + Lx6 LINE L1 5989 6268 -1192 8 1920 3681 143 87 58 chr1 175053136 175053270 -22142162 - RLTR22_Mur LTR ERVK -871 977 843 8 1920 599 0 14 0 chr1 175053270 175053341 -22142091 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1920 3681 143 87 58 chr1 175053341 175053548 -22141884 - RLTR22_Mur LTR ERVK -1006 842 593 8 1920 1023 57 0 7 chr1 175053548 175053690 -22141742 + L1_Mus1 LINE L1 6427 6567 0 8 1920 3681 143 87 58 chr1 175053690 175054128 -22141304 - RLTR22_Mur LTR ERVK -1256 592 175 8 1920 468 0 0 0 chr1 175054130 175054182 -22141250 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1920 479 155 9 88 chr1 175054185 175054298 -22141134 - RLTR22_Mus LTR ERVK -1177 631 528 8 1920 868 171 16 39 chr1 175054338 175054520 -22140912 - RLTR22_Mur LTR ERVK -1669 179 2 8 1920 1274 183 4 49 chr1 175054521 175054785 -22140647 - Lx5 LINE L1 -944 6106 5855 8 1920 314 239 123 65 chr1 175055077 175055247 -22140185 + L1MDb LINE L1 772 951 -5458 8 1920 250 211 0 62 chr1 175055239 175055335 -22140097 + L1MDb LINE L1 3063 3152 -3254 8 1920 498 316 90 69 chr1 175055362 175055783 -22139649 + L1M5 LINE L1 2986 3415 -2731 8 1920 786 261 70 6 chr1 175055821 175056111 -22139321 + L1MC LINE L1 3698 4035 -2111 8 1920 306 252 29 10 chr1 175056113 175056217 -22139215 + L1MDb LINE L1 4369 4474 -1932 8 1920 30 0 0 0 chr1 175056264 175056294 -22139138 + AT_rich Low_complexity Low_complexity 1 30 0 9 1920 517 324 21 0 chr1 175056380 175056525 -22138907 + B1F1 SINE Alu 1 148 -1 9 1920 1335 269 24 6 chr1 175056525 175056858 -22138574 + Lx6 LINE L1 7048 7386 -74 9 1920 558 0 0 0 chr1 175057832 175057894 -22137538 + (TC)n Simple_repeat Simple_repeat 2 63 0 9 1920 297 0 0 0 chr1 175057894 175057926 -22137506 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1920 2755 46 54 0 chr1 175061510 175061860 -22133572 + L1Md_F3 LINE L1 6205 6573 -11 9 1920 873 263 21 110 chr1 175061912 175062203 -22133229 + B4 SINE B4 27 291 -1 9 1920 223 257 14 0 chr1 175062225 175062299 -22133133 + (CAAA)n Simple_repeat Simple_repeat 4 78 0 9 1920 548 250 14 14 chr1 175062305 175062451 -22132981 + B1_Mus1 SINE Alu 2 147 -1 9 1920 22 0 0 0 chr1 175062662 175062684 -22132748 + AT_rich Low_complexity Low_complexity 1 22 0 9 1920 452 354 42 19 chr1 175062858 175063074 -22132358 + Lx8 LINE L1 7105 7325 -148 1 1920 600 292 5 38 chr1 175063204 175063389 -22132043 + MTD LTR MaLR 1 179 -240 1 1920 1333 246 112 31 chr1 175063389 175063809 -22131623 + Lx9 LINE L1 7024 7477 -167 1 1920 450 0 0 0 chr1 175063811 175063861 -22131571 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1920 200 275 9 29 chr1 175063892 175063997 -22131435 + A-rich Low_complexity Low_complexity 4 106 0 1 1920 1094 303 70 26 chr1 175064031 175064864 -22130568 + L1M5 LINE L1 3700 4591 -1555 1 1920 1147 248 36 7 chr1 175065209 175065489 -22129943 - Lx6 LINE L1 -15 7445 7158 1 1920 45 34 0 0 chr1 175066587 175066646 -22128786 + AT_rich Low_complexity Low_complexity 1 59 0 1 1920 253 261 0 14 chr1 175066844 175066988 -22128444 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 1920 286 283 49 29 chr1 175067813 175067915 -22127517 - L2a LINE L2 -8 3418 3315 1 1920 348 351 52 15 chr1 175069017 175069153 -22126279 - ERVL-E-int LTR ERVL -2584 3083 2943 1 1920 4701 63 5 5 chr1 175069306 175069912 -22125520 - L1Md_F2 LINE L1 -10 6572 5967 1 1920 2200 79 0 0 chr1 175069912 175070203 -22125229 + L1Md_F2 LINE L1 5661 5951 -631 1 1920 22 35 0 0 chr1 175070543 175070572 -22124860 + AT_rich Low_complexity Low_complexity 1 29 0 1 1920 627 296 30 33 chr1 175071056 175071357 -22124075 - RLTR15 LTR ERVK -15 344 45 1 1920 4803 202 40 44 chr1 175071439 175072679 -22122753 - MYSERV-int LTR ERVK 0 6550 5316 1 1920 634 278 30 70 chr1 175072687 175072888 -22122544 - RMER4A LTR ERVK -28 438 246 1 1920 1370 269 57 28 chr1 175072898 175073369 -22122063 - MYSERV-int LTR ERVK -1441 5109 4625 1 1920 36 0 0 0 chr1 175073422 175073458 -22121974 + AT_rich Low_complexity Low_complexity 1 36 0 1 1920 810 242 21 7 chr1 175073731 175073943 -22121489 - MYSERV-int LTR ERVK -2428 4122 3944 1 1920 4603 126 13 21 chr1 175074026 175075156 -22120276 + L1VL4 LINE L1 177 1294 -2265 1 1920 12414 149 9 1 chr1 175075135 175077425 -22118007 + Lx LINE L1 3726 6036 -618 1 1920 1628 136 4 25 chr1 175077435 175077715 -22117717 + Lx LINE L1 6372 6645 -9 1 1920 36 62 0 0 chr1 175077851 175077915 -22117517 + AT_rich Low_complexity Low_complexity 1 64 0 1 1920 516 72 0 0 chr1 175077923 175077992 -22117440 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1920 270 81 0 0 chr1 175078082 175078119 -22117313 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1920 34 24 0 0 chr1 175078121 175078162 -22117270 + AT_rich Low_complexity Low_complexity 1 41 0 1 1920 1374 241 69 67 chr1 175078231 175078711 -22116721 + Lx9 LINE L1 6932 7412 -232 1 1920 549 0 0 0 chr1 175079094 175079155 -22116277 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1920 2438 124 25 15 chr1 175079549 175079943 -22115489 + Lx LINE L1 6255 6652 -2 1 1920 870 161 16 22 chr1 175081216 175081400 -22114032 - L1_Mur3 LINE L1 -489 5391 5209 1 1920 222 91 0 0 chr1 175081405 175081438 -22113994 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1920 468 81 0 0 chr1 175082985 175083059 -22112373 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1920 432 375 108 28 chr1 175085419 175085781 -22109651 - MLT1E1A LTR MaLR -5 675 285 1 1920 225 326 58 0 chr1 175085910 175085996 -22109436 - MLT1E1A LTR MaLR -417 143 53 1 1920 39498 30 2 6 chr1 175086371 175092568 -22102864 - L1Md_A LINE L1 0 6582 418 1 1920 313 282 79 16 chr1 175092570 175092696 -22102736 - MER58B DNA MER1_type -207 134 1 1 1920 520 230 123 12 chr1 175092698 175092861 -22102571 - L1MEg LINE L1 -5513 571 391 1 1920 1180 313 38 11 chr1 175093122 175093574 -22101858 + L1_Mur3 LINE L1 82 545 -7167 1 1920 1227 246 56 19 chr1 175093584 175093994 -22101438 + L1_Mur3 LINE L1 836 1260 -6452 1 1920 3668 189 36 17 chr1 175094231 175094770 -22100662 + L1_Mur3 LINE L1 888 1500 -4377 1 1920 483 18 0 0 chr1 175094770 175094826 -22100606 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 1920 3668 182 39 14 chr1 175094826 175095046 -22100386 + L1_Mur3 LINE L1 1501 1731 -4146 1 1920 2067 155 69 8 chr1 175095046 175095424 -22100008 + RLTR9D LTR ERVK 1 401 -2 1 1920 3668 182 39 14 chr1 175095424 175095469 -22099963 + L1_Mur3 LINE L1 1732 1771 -4106 1 1920 603 0 0 0 chr1 175095469 175095536 -22099896 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 1 1920 3668 182 39 14 chr1 175095536 175095802 -22099630 + L1_Mur3 LINE L1 1772 2047 -3830 1 1920 782 166 0 33 chr1 175095804 175095954 -22099478 + Lx3B LINE L1 6825 6969 -4 1 1920 870 181 123 114 chr1 175096008 175096166 -22099266 + L1_Mur3 LINE L1 4407 4585 -1295 1 1920 1719 173 33 26 chr1 175096166 175096469 -22098963 - Lx4A LINE L1 -16 7042 6738 1 1920 2563 71 6 3 chr1 175096476 175096814 -22098618 - L1_Mus3 LINE L1 -1 6637 6299 1 1920 870 181 123 114 chr1 175096814 175096871 -22098561 + L1_Mur3 LINE L1 4586 4632 -1248 1 1920 609 49 0 0 chr1 175096871 175096952 -22098480 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 1 1920 870 193 86 87 chr1 175096952 175097084 -22098348 + L1_Mur3 LINE L1 4633 4795 -1348 1 1920 3317 194 93 5 chr1 175097059 175097197 -22098235 + Lx7 LINE L1 5073 5238 -642 1 1920 333 0 0 0 chr1 175097197 175097234 -22098198 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1920 3317 204 103 8 chr1 175097234 175098128 -22097304 + Lx7 LINE L1 5239 6198 -1498 1 1920 6796 63 15 3 chr1 175098131 175099025 -22096407 + L1_Mus2 LINE L1 5711 6565 -1 1 1920 2975 29 3 0 chr1 175099025 175099370 -22096062 - ORR1A0 LTR MaLR 0 346 1 1 1920 4614 238 85 10 chr1 175099370 175100539 -22094893 + L1_Mus2 LINE L1 6219 7458 -2 1 1920 2379 80 26 27 chr1 175100806 175101214 -22094218 - L1_Mus3 LINE L1 -701 5937 5528 1 1920 4520 110 7 6 chr1 175101214 175101889 -22093543 + L1_Mus3 LINE L1 5962 6637 -1 1 1920 271 239 0 15 chr1 175101932 175101946 -22093486 + (CAGAGA)n Simple_repeat Simple_repeat 2 15 0 1 1920 603 51 0 0 chr1 175101946 175102025 -22093407 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1 1920 271 239 0 15 chr1 175102025 175102078 -22093354 + (CAGAGA)n Simple_repeat Simple_repeat 4 55 0 1 1920 872 246 31 77 chr1 175102137 175102308 -22093124 + Lx6 LINE L1 6864 7028 -432 1 1920 4141 74 2 0 chr1 175102308 175102848 -22092584 + L1_Mus1 LINE L1 6027 6567 0 1 1920 872 246 31 77 chr1 175102848 175102936 -22092496 + Lx6 LINE L1 7029 7111 -349 1 1920 227 189 19 0 chr1 175102945 175102998 -22092434 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 1 1920 600 276 39 44 chr1 175102998 175103203 -22092229 + Lx6 LINE L1 7118 7321 -139 1 1920 3420 133 45 0 chr1 175103203 175103780 -22091652 + L1_Mur2 LINE L1 4669 5271 -606 1 1920 408 99 0 0 chr1 175103780 175103851 -22091581 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 1 1920 428 262 19 0 chr1 175103854 175103961 -22091471 + Lx6 LINE L1 7311 7419 -41 1 1920 1148 152 47 9 chr1 175103996 175104208 -22091224 - RLTR22_Mur LTR ERVK -39 1809 1590 1 1920 4262 187 76 14 chr1 175104417 175105352 -22090080 - RLTR22_Mur LTR ERVK -855 993 1 1 1920 35001 15 0 0 chr1 175105907 175110658 -22084774 - L1Md_A LINE L1 0 6582 1831 1 1921 362 20 0 39 chr1 175112472 175112524 -22082908 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1921 379 375 22 93 chr1 175114690 175115002 -22080430 + B4 SINE B4 1 290 -2 1 1921 24 32 0 0 chr1 175115732 175115763 -22079669 + AT_rich Low_complexity Low_complexity 1 31 0 1 1921 710 323 128 17 chr1 175115800 175116507 -22078925 + Lx8 LINE L1 6663 7464 -9 1 1921 522 307 33 22 chr1 175116549 175116729 -22078703 + MTD LTR MaLR 1 182 -237 1 1921 1837 194 189 25 chr1 175116729 175117137 -22078295 + Lx9 LINE L1 7023 7477 -167 1 1921 309 51 0 0 chr1 175117137 175117176 -22078256 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1921 1837 194 189 25 chr1 175117176 175117295 -22078137 + Lx9 LINE L1 7478 7637 -7 1 1921 886 314 112 32 chr1 175117382 175118415 -22077017 + L1M5 LINE L1 3699 4818 -1328 1 1921 813 49 0 0 chr1 175119600 175119702 -22075730 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 1921 252 360 29 0 chr1 175119972 175120106 -22075326 - MIRc SINE MIR -117 151 14 1 1921 308 299 83 19 chr1 175121024 175121173 -22074259 - L2a LINE L2 -1 3425 3222 1 1921 27 0 0 0 chr1 175122896 175122923 -22072509 + AT_rich Low_complexity Low_complexity 1 27 0 1 1921 251 114 0 22 chr1 175123024 175123069 -22072363 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1921 1496 236 67 61 chr1 175123144 175123622 -22071810 + Lx9 LINE L1 6932 7412 -232 1 1921 26 50 0 0 chr1 175124304 175124344 -22071088 + AT_rich Low_complexity Low_complexity 1 40 0 1 1921 21 0 0 0 chr1 175124771 175124792 -22070640 + AT_rich Low_complexity Low_complexity 1 21 0 1 1921 5595 184 24 32 chr1 175124955 175126434 -22068998 + L1_Mur2 LINE L1 1026 2502 -3375 1 1921 1690 270 49 48 chr1 175126438 175127394 -22068038 + Lx5 LINE L1 6141 7008 -42 1 1921 25 31 0 0 chr1 175127411 175127443 -22067989 + AT_rich Low_complexity Low_complexity 1 32 0 1 1921 500 142 9 36 chr1 175128772 175128882 -22066550 + Lx9 LINE L1 7531 7637 -7 1 1921 643 131 49 0 chr1 175129169 175129291 -22066141 - L1_Mus3 LINE L1 -5 6633 6506 1 1921 296 321 35 78 chr1 175129825 175129940 -22065492 - RSINE1 SINE B4 0 165 56 1 1921 577 187 277 0 chr1 175130623 175130789 -22064643 - B3 SINE B2 0 216 5 1 1921 508 319 59 65 chr1 175131543 175131729 -22063703 - L1MA10 LINE L1 -41 6293 6106 1 1921 5576 90 26 1 chr1 175131729 175132508 -22062924 - Lx3_Mus LINE L1 0 7009 6212 1 1921 508 319 59 65 chr1 175132508 175132797 -22062635 - L1MA10 LINE L1 -229 6105 5821 1 1921 256 181 179 57 chr1 175132776 175132899 -22062533 - L1_Rod LINE L1 -100 5747 5610 1 1921 381 280 78 25 chr1 175132930 175133209 -22062223 + L1M3 LINE L1 5376 5669 -520 1 1921 26 0 0 0 chr1 175134473 175134499 -22060933 + AT_rich Low_complexity Low_complexity 1 26 0 1 1921 380 236 0 22 chr1 175135010 175135101 -22060331 - Lx9 LINE L1 -601 7043 6955 1 1921 855 263 38 17 chr1 175135106 175135346 -22060086 - Lx9 LINE L1 -1733 5911 5667 1 1921 1870 220 52 35 chr1 175135344 175135919 -22059513 + Lx9 LINE L1 7052 7636 -8 1 1921 297 340 65 32 chr1 175136913 175137068 -22058364 + LTR16A LTR ERVL 236 395 -56 1 1921 2049 196 22 99 chr1 175137509 175137712 -22057720 + MTC LTR MaLR 1 205 -216 1 1921 1018 184 18 18 chr1 175137712 175137933 -22057499 + Lx4A LINE L1 6838 7058 0 1 1921 2049 196 22 99 chr1 175137933 175137958 -22057474 + MTC LTR MaLR 206 206 -215 1 1921 180 0 0 0 chr1 175137958 175137978 -22057454 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1921 2049 196 22 99 chr1 175137978 175138102 -22057330 + MTC LTR MaLR 206 329 -92 1 1921 1985 213 49 161 chr1 175138102 175138737 -22056695 - RMER19C LTR ERVK 0 611 53 1 1921 406 0 37 0 chr1 175138737 175138791 -22056641 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1921 1985 213 49 161 chr1 175138791 175138843 -22056589 - RMER19C LTR ERVK -559 52 1 1 1921 2049 196 22 99 chr1 175138843 175138941 -22056491 + MTC LTR MaLR 330 418 -3 1 1921 5656 53 3 0 chr1 175139445 175140136 -22055296 - L1_Mus1 LINE L1 -1 6566 5874 1 1921 347 333 89 17 chr1 175140206 175140499 -22054933 - MER58B DNA MER1_type -15 326 13 1 1921 554 269 57 23 chr1 175140512 175140687 -22054745 - L1MEg LINE L1 -5513 571 391 1 1921 450 0 0 0 chr1 175141001 175141051 -22054381 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1921 261 0 0 0 chr1 175141349 175141378 -22054054 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1921 1095 56 21 7 chr1 175141675 175141820 -22053612 - B1_Mm SINE Alu 0 147 1 1 1921 247 375 0 10 chr1 175144326 175144423 -22051009 - MIRb SINE MIR -2 266 171 2 1921 229 241 0 0 chr1 175145140 175145194 -22050238 - L1M1 LINE L1 -575 5725 5672 2 1921 549 151 0 9 chr1 175146982 175147089 -22048343 - Lx2B LINE L1 -2 6998 6893 2 1921 300 314 48 24 chr1 175148237 175148361 -22047071 + LTR16A LTR ERVL 244 370 -81 2 1921 396 0 0 0 chr1 175150280 175150324 -22045108 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1921 206 328 70 8 chr1 175152370 175152499 -22042933 - MIRc SINE MIR -2 266 130 2 1921 5795 150 15 7 chr1 175153079 175154003 -22041429 + Lx4A LINE L1 6125 7056 -2 2 1921 27 29 0 0 chr1 175154324 175154358 -22041074 + AT_rich Low_complexity Low_complexity 1 34 0 2 1921 1152 184 32 9 chr1 175155153 175155373 -22040059 + URR1B DNA MER1_type 1 225 0 2 1921 23 33 0 0 chr1 175156030 175156060 -22039372 + AT_rich Low_complexity Low_complexity 1 30 0 2 1921 31 96 0 0 chr1 175157814 175157908 -22037524 + AT_rich Low_complexity Low_complexity 1 94 0 2 1921 223 178 0 43 chr1 175159093 175159140 -22036292 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1921 274 228 87 102 chr1 175159256 175159383 -22036049 + Charlie4a DNA MER1_type 349 473 -35 2 1921 241 383 8 65 chr1 175159976 175160099 -22035333 - MIR SINE MIR -132 130 15 2 1921 277 277 0 0 chr1 175160367 175160432 -22035000 - B3A SINE B2 -124 74 10 2 1921 27 0 0 0 chr1 175161058 175161085 -22034347 + AT_rich Low_complexity Low_complexity 1 27 0 2 1921 1141 214 67 14 chr1 175161786 175162071 -22033361 - RMER1C Other Other -12 1330 1031 2 1921 8566 46 1 0 chr1 175162074 175163242 -22032190 - L1Md_F2 LINE L1 -592 5990 4821 2 1921 4966 35 5 0 chr1 175163242 175163835 -22031597 + L1Md_F2 LINE L1 5975 6570 -12 2 1921 1527 303 40 18 chr1 175163837 175164338 -22031094 - RMER1C Other Other -303 1039 528 2 1921 236 314 37 28 chr1 175164527 175164635 -22030797 - RMER1B Other Other -915 151 43 2 1921 372 299 14 42 chr1 175164644 175164787 -22030645 + MIR SINE MIR 94 232 -30 2 1921 404 274 28 19 chr1 175165391 175165499 -22029933 + PB1D7 SINE Alu 12 120 0 2 1921 544 282 106 40 chr1 175165509 175165782 -22029650 + B4A SINE B4 2 292 0 2 1921 342 0 0 0 chr1 175165792 175165830 -22029602 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1921 1228 336 85 40 chr1 175166387 175167260 -22028172 - Arthur1B DNA Tip100 -2 1223 312 2 1921 2247 166 43 5 chr1 175167513 175167930 -22027502 - Lx2A1 LINE L1 -4 7004 6572 2 1921 2084 287 17 7 chr1 175168461 175169051 -22026381 - Lx5 LINE L1 0 7050 6455 2 1921 594 0 0 0 chr1 175169065 175169131 -22026301 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1921 1442 235 15 3 chr1 175169142 175169501 -22025931 + Lx5 LINE L1 6145 6725 -735 2 1921 182 421 55 28 chr1 175170376 175170630 -22024802 - L2b LINE L2 -202 3173 2913 2 1921 309 345 170 51 chr1 175170990 175171738 -22023694 - L2b LINE L2 -786 2633 1797 2 1921 194 333 0 0 chr1 175172406 175172454 -22022978 - MIRm SINE MIR -13 263 216 2 1921 195 260 120 0 chr1 175172601 175172651 -22022781 - L2b LINE L2 0 3375 3320 2 1921 183 42 0 0 chr1 175173069 175173093 -22022339 + (TAGG)n Simple_repeat Simple_repeat 1 24 0 2 1921 1293 32 0 31 chr1 175173093 175173355 -22022077 + (TAGA)n Simple_repeat Simple_repeat 1 253 0 2 1921 8149 63 12 3 chr1 175173560 175175413 -22020019 + L1Md_F2 LINE L1 4749 6582 0 2 1921 790 186 26 0 chr1 175175633 175175789 -22019643 + Lx6 LINE L1 6535 6694 -766 2 1921 1001 97 0 0 chr1 175175792 175175926 -22019506 + B2_Mm2 SINE B2 1 134 -61 2 1921 2773 211 27 27 chr1 175175932 175176532 -22018900 + Lx6 LINE L1 6684 7283 -177 2 1921 747 33 0 0 chr1 175176579 175176669 -22018763 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 2 1921 326 261 26 35 chr1 175176731 175176846 -22018586 + Lx7 LINE L1 7208 7321 -375 2 1921 561 30 0 0 chr1 175176871 175176938 -22018494 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1921 37 52 0 0 chr1 175177087 175177145 -22018287 + AT_rich Low_complexity Low_complexity 1 58 0 2 1921 23 33 0 0 chr1 175177257 175177287 -22018145 + AT_rich Low_complexity Low_complexity 1 30 0 2 1921 1407 302 96 11 chr1 175178516 175179059 -22016373 + Lx8 LINE L1 6880 7468 -5 2 1921 1650 129 140 0 chr1 175179265 175179537 -22015895 + MT2B2 LTR ERVL 1 310 -274 2 1921 2170 104 0 0 chr1 175179913 175180210 -22015222 + MT2B2 LTR ERVL 288 584 0 2 1921 430 325 55 28 chr1 175180364 175180582 -22014850 + RMER15 LTR ERVL 337 560 -15 2 1921 1097 128 0 6 chr1 175181590 175181771 -22013661 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1921 4726 127 18 8 chr1 175182153 175182882 -22012550 - RMER19A LTR ERVK 0 737 2 2 1921 294 289 9 17 chr1 175183049 175183165 -22012267 + Lx7 LINE L1 7562 7676 -20 2 1921 25 0 0 0 chr1 175183259 175183284 -22012148 + AT_rich Low_complexity Low_complexity 1 25 0 2 1921 930 367 101 68 chr1 175183547 175184330 -22011102 + MTE-int LTR MaLR 165 973 -607 2 1921 884 233 28 0 chr1 175184354 175184530 -22010902 + B3 SINE B2 2 182 -34 2 1921 39373 7 0 1 chr1 175184547 175191338 -22004094 - L1Md_A LINE L1 0 6582 1 2 1921 18610 73 1 5 chr1 175191531 175195054 -22000378 + L1Md_F LINE L1 392 3897 -1986 2 1921 664 67 11 0 chr1 175195042 175195132 -22000300 + L1Md_F2 LINE L1 6043 6133 -449 2 1921 339 264 209 0 chr1 175195247 175195357 -22000075 - ID_B1 SINE B4 -10 214 82 2 1921 208 352 164 6 chr1 175196568 175196745 -21998687 + L3 LINE CR1 4120 4324 -165 2 1921 1066 107 6 6 chr1 175196968 175197146 -21998286 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 1921 199 354 0 44 chr1 175197281 175197349 -21998083 + L3 LINE CR1 4325 4389 -100 2 1921 217 0 61 0 chr1 175197873 175197906 -21997526 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1921 507 56 0 0 chr1 175198005 175198076 -21997356 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1921 328 216 21 43 chr1 175198624 175198764 -21996668 - Lx9 LINE L1 -1 7643 7507 2 1921 315 257 0 79 chr1 175201263 175201339 -21994093 + MER44B DNA MER2_type 20 89 -461 2 1921 479 17 0 16 chr1 175201353 175201414 -21994018 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2 1921 996 120 12 31 chr1 175201414 175201577 -21993855 - B2_Mm2 SINE B2 -34 161 2 2 1921 441 367 7 0 chr1 175201579 175201726 -21993706 + MER44B DNA MER2_type 80 227 -323 2 1921 237 218 72 9 chr1 175201770 175201881 -21993551 + Tigger7 DNA MER2_type 2273 2390 -101 2 1921 690 364 18 18 chr1 175201930 175202204 -21993228 - B4A SINE B4 -2 290 17 2 1921 482 294 49 24 chr1 175202209 175202373 -21993059 + MER44B DNA MER2_type 372 539 -11 2 1921 1104 180 46 32 chr1 175203111 175203329 -21992103 + URR1A DNA MER1_type 1 221 -5 2 1921 261 297 61 26 chr1 175205368 175205482 -21989950 + PB1D9 SINE Alu 3 120 0 2 1921 197 254 32 63 chr1 175205811 175205874 -21989558 - L2 LINE L2 -2929 490 430 2 1921 256 290 65 9 chr1 175206558 175206666 -21988766 - MIR SINE MIR -70 192 79 2 1921 645 199 12 6 chr1 175206789 175206961 -21988471 + (TA)n Simple_repeat Simple_repeat 2 174 0 2 1921 540 338 150 43 chr1 175207218 175207685 -21987747 + MLT1F1 LTR MaLR 47 563 -6 2 1921 6340 172 32 23 chr1 175208036 175209413 -21986019 + Lx7 LINE L1 4355 5743 -137 2 1921 840 319 38 66 chr1 175209439 175209865 -21985567 - BGLII_B LTR ERVK -27 414 1 2 1921 3969 252 91 5 chr1 175209865 175211093 -21984339 + Lx7 LINE L1 5741 7074 -622 2 1921 490 188 54 20 chr1 175211091 175211238 -21984194 + Lx7 LINE L1 7396 7547 -149 2 1921 24 32 0 0 chr1 175211238 175211269 -21984163 + AT_rich Low_complexity Low_complexity 1 31 0 2 1921 304 301 28 57 chr1 175211652 175211793 -21983639 + MTEb LTR MaLR 240 376 -3 2 1921 345 293 105 60 chr1 175212735 175213105 -21982327 - Charlie21a DNA MER1_type -5 1208 822 2 1921 1210 186 9 69 chr1 175214090 175214425 -21981007 + L1_Mur1 LINE L1 1 315 -6667 2 1921 13007 188 8 50 chr1 175214445 175214870 -21980562 + Lx3_Mus LINE L1 2968 3402 -2478 2 1921 1690 79 4 84 chr1 175214870 175215145 -21980287 + L1_Mus2 LINE L1 6314 6566 0 2 1921 13007 188 8 50 chr1 175215145 175215300 -21980132 + Lx3_Mus LINE L1 3403 3461 -2419 2 1921 859 89 0 0 chr1 175215300 175215423 -21980009 + L1_Mus2 LINE L1 6444 6566 0 2 1921 16645 78 4 17 chr1 175215423 175217905 -21977527 + Lx3_Mus LINE L1 3462 5907 -1102 2 1921 459 0 0 0 chr1 175217905 175217956 -21977476 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 2 1921 8946 97 30 4 chr1 175217956 175218997 -21976435 + Lx3_Mus LINE L1 5908 6982 -27 2 1921 1169 197 42 51 chr1 175218997 175219329 -21976103 + RMER17C LTR ERVK 82 410 0 2 1921 430 237 86 37 chr1 175219442 175219604 -21975828 - Charlie21a DNA MER1_type -774 439 270 2 1921 282 236 27 27 chr1 175220357 175220431 -21975001 + MIRc SINE MIR 77 150 -118 2 1921 23 78 0 0 chr1 175220493 175220544 -21974888 + AT_rich Low_complexity Low_complexity 1 51 0 2 1921 404 278 97 31 chr1 175220789 175221022 -21974410 + L1M3 LINE L1 4897 5139 -1001 2 1921 342 218 184 8 chr1 175221066 175221191 -21974241 + L1M3 LINE L1 5583 5729 -562 2 1921 354 23 0 0 chr1 175221280 175221323 -21974109 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1921 587 314 7 14 chr1 175221329 175221471 -21973961 - RSINE1 SINE B4 -21 144 4 2 1921 216 182 0 0 chr1 175221825 175221869 -21973563 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1921 213 400 18 18 chr1 175221931 175222043 -21973389 + PB1D10 SINE Alu 1 112 -5 2 1921 693 269 62 50 chr1 175223272 175223675 -21971757 - L1MB4 LINE L1 0 6180 5773 2 1921 449 32 32 0 chr1 175223904 175223966 -21971466 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 2 1921 629 275 22 0 chr1 175224112 175224294 -21971138 - L1MB4 LINE L1 -980 5166 4981 2 1921 291 289 24 42 chr1 175224302 175224451 -21970981 - MLT1A1 LTR MaLR 0 408 223 2 1921 237 226 0 19 chr1 175224697 175224751 -21970681 - L1MC4 LINE L1 -189 7853 7801 2 1921 419 272 103 0 chr1 175224753 175224889 -21970543 + MER106B DNA MER1_type 2 151 -908 2 1921 342 317 77 60 chr1 175224980 175225329 -21970103 - L1MC4 LINE L1 -239 7803 7449 2 1921 185 324 28 38 chr1 175225500 175225606 -21969826 + MIRb SINE MIR 126 230 -38 2 1921 266 250 73 0 chr1 175226024 175226092 -21969340 + Arthur1B DNA Tip100 1 73 -1152 2 1921 576 0 0 0 chr1 175227256 175227320 -21968112 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1921 216 86 0 0 chr1 175228280 175228315 -21967117 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2 1921 1001 72 63 28 chr1 175228315 175228448 -21966984 - B1_Mus1 SINE Alu -6 142 2 2 1921 316 88 17 17 chr1 175228475 175228533 -21966899 + (CCCCCT)n Simple_repeat Simple_repeat 4 61 0 2 1921 656 169 0 116 chr1 175228575 175228722 -21966710 - B1_Mus2 SINE Alu 0 147 18 2 1921 453 269 93 32 chr1 175229814 175230060 -21965372 - L1MCa LINE L1 -4279 2229 1969 2 1921 243 0 0 0 chr1 175230237 175230264 -21965168 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1921 551 230 112 89 chr1 175230325 175230583 -21964849 - B4A SINE B4 -27 265 2 3 1921 198 0 0 0 chr1 175230635 175230657 -21964775 + (TTG)n Simple_repeat Simple_repeat 2 23 0 3 1921 749 232 128 58 chr1 175230701 175231199 -21964233 - L1MCa LINE L1 -4920 1588 1056 2 1921 841 223 16 76 chr1 175231220 175231438 -21963994 - Lx6 LINE L1 -311 7149 6956 3 1921 906 249 46 38 chr1 175231458 175231804 -21963628 - L1M2 LINE L1 -1472 4671 4323 3 1921 234 149 235 15 chr1 175232040 175232108 -21963324 - Lx8 LINE L1 -2 7471 7389 3 1921 382 339 53 0 chr1 175232168 175232326 -21963106 - B3A SINE B2 -8 208 36 3 1921 401 270 49 68 chr1 175232408 175232571 -21962861 + L1MA8 LINE L1 5892 6051 -240 3 1921 263 371 75 0 chr1 175233193 175233352 -21962080 - L2 LINE L2 -551 2868 2698 3 1921 407 19 0 19 chr1 175234090 175234143 -21961289 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 3 1921 595 130 111 30 chr1 175234613 175234668 -21960764 + Lx2A1 LINE L1 6863 6931 -77 3 1921 252 0 0 0 chr1 175234668 175234696 -21960736 + (GGATG)n Simple_repeat Simple_repeat 3 30 0 3 1921 595 130 111 30 chr1 175234696 175234775 -21960657 + Lx2A1 LINE L1 6932 7007 -1 3 1921 1546 285 52 4 chr1 175235206 175235911 -21959521 - Zaphod DNA Tip100 -61 3970 3232 3 1921 240 235 0 0 chr1 175236373 175236424 -21959008 + (TTA)n Simple_repeat Simple_repeat 2 52 0 3 1921 443 296 40 23 chr1 175236470 175236643 -21958789 - Zaphod DNA Tip100 -1319 2712 2537 3 1921 428 313 121 50 chr1 175236697 175237168 -21958264 - Zaphod DNA Tip100 -2453 1578 1049 3 1921 942 237 24 19 chr1 175237168 175237379 -21958053 - B3 SINE B2 -4 212 1 3 1921 428 313 121 50 chr1 175237379 175237714 -21957718 - Zaphod DNA Tip100 -2983 1048 715 3 1921 334 323 24 24 chr1 175237728 175237855 -21957577 + RSINE1 SINE B4 3 129 -36 3 1921 739 255 9 92 chr1 175237929 175238158 -21957274 + B3 SINE B2 1 210 -6 3 1921 1663 274 76 35 chr1 175238165 175238820 -21956612 - Zaphod DNA Tip100 -3317 714 33 3 1921 369 232 115 32 chr1 175238889 175239045 -21956387 - MTEb LTR MaLR 0 379 211 3 1921 432 0 0 0 chr1 175239236 175239284 -21956148 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1921 1151 82 0 0 chr1 175239305 175239452 -21955980 + B1_Mus1 SINE Alu 2 148 0 3 1921 1307 85 16 21 chr1 175239552 175239745 -21955687 - L1_Mus2 LINE L1 0 6566 6375 3 1921 251 349 23 8 chr1 175240619 175240749 -21954683 - MIRb SINE MIR -123 145 14 3 1921 198 270 61 55 chr1 175241376 175241485 -21953947 + L2c LINE L2 3238 3329 -46 3 1921 3553 25 0 0 chr1 175241764 175242160 -21953272 + MTA_Mm LTR MaLR 1 396 0 3 1922 236 306 143 15 chr1 175244636 175244832 -21950600 + MIR SINE MIR 23 243 -19 3 1922 192 77 0 0 chr1 175246795 175246821 -21948611 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1922 356 242 50 8 chr1 175246838 175246959 -21948473 + Lx9 LINE L1 7515 7640 -4 3 1922 614 253 58 11 chr1 175248428 175248616 -21946816 + L3 LINE CR1 2048 2244 -2245 3 1922 237 391 27 31 chr1 175248814 175249070 -21946362 + L3 LINE CR1 2369 2623 -1866 3 1922 252 365 68 40 chr1 175249109 175249360 -21946072 - MIR SINE MIR -2 260 3 3 1922 255 304 61 42 chr1 175249471 175249636 -21945796 + L3 LINE CR1 2749 2916 -1573 3 1922 197 359 53 8 chr1 175250692 175250824 -21944608 - MIRb SINE MIR -35 233 96 3 1922 239 330 54 27 chr1 175253575 175253687 -21941745 - MIRc SINE MIR -50 218 104 3 1922 586 327 49 84 chr1 175255078 175255529 -21939903 - L3 LINE CR1 -351 4138 3704 3 1922 330 98 0 0 chr1 175256064 175256115 -21939317 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 3 1922 228 167 0 0 chr1 175257131 175257167 -21938265 + B1F SINE Alu 1 36 -113 3 1922 247 333 150 8 chr1 175257298 175257425 -21938007 + B3A SINE B2 29 173 -25 3 1922 297 0 0 0 chr1 175257444 175257477 -21937955 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1922 807 31 0 0 chr1 175257488 175257586 -21937846 + (GA)n Simple_repeat Simple_repeat 2 99 0 3 1922 260 391 19 13 chr1 175257666 175257824 -21937608 - L2b LINE L2 -233 3142 2984 3 1922 189 107 0 0 chr1 175258256 175258284 -21937148 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1922 582 15 0 0 chr1 175258284 175258351 -21937081 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 3 1922 243 0 0 0 chr1 175259788 175259815 -21935617 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1922 513 0 0 0 chr1 175259815 175259871 -21935561 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1922 456 19 0 0 chr1 175261032 175261085 -21934347 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1922 195 239 0 0 chr1 175261157 175261224 -21934208 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1922 453 36 0 0 chr1 175261224 175261279 -21934153 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1922 453 190 0 0 chr1 175265969 175266069 -21929363 + (CA)n Simple_repeat Simple_repeat 1 100 0 3 1922 904 138 6 6 chr1 175267514 175267682 -21927750 + (TG)n Simple_repeat Simple_repeat 2 169 0 3 1922 224 267 34 25 chr1 175267748 175267867 -21927565 + GA-rich Low_complexity Low_complexity 4 123 0 3 1922 369 0 0 0 chr1 175268621 175268662 -21926770 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1922 250 255 221 55 chr1 175270487 175270627 -21924805 - B4 SINE B4 -51 241 79 3 1922 681 13 0 0 chr1 175272047 175272125 -21923307 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 1922 1134 80 0 0 chr1 175272125 175272263 -21923169 - B1_Mus1 SINE Alu -10 138 1 3 1922 396 0 0 0 chr1 175273476 175273520 -21921912 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1922 197 359 40 46 chr1 175273917 175274069 -21921363 - MIR3 SINE MIR -11 197 47 3 1922 493 269 7 7 chr1 175274145 175274280 -21921152 + MER58A DNA MER1_type 1 135 -89 3 1922 354 45 0 0 chr1 175274646 175274690 -21920742 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1922 615 71 0 0 chr1 175274898 175274983 -21920449 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1922 566 304 7 0 chr1 175277304 175277442 -21917990 - B1_Mur1 SINE Alu -10 139 1 3 1922 791 274 25 8 chr1 175277601 175277826 -21917606 + ID_B1 SINE B4 15 246 -46 3 1922 363 145 24 12 chr1 175277826 175277910 -21917522 + GA-rich Low_complexity Low_complexity 1 85 0 3 1922 215 362 0 0 chr1 175279487 175279556 -21915876 - MIR3 SINE MIR -31 177 109 3 1922 183 80 0 0 chr1 175279591 175279616 -21915816 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1922 234 301 155 31 chr1 175279712 175279873 -21915559 - MIRb SINE MIR -63 205 25 3 1922 228 35 0 0 chr1 175280376 175280405 -21915027 + (TTGGGG)n Simple_repeat Simple_repeat 1 29 0 3 1922 366 85 0 0 chr1 175282484 175282543 -21912889 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1922 296 275 0 0 chr1 175282592 175282661 -21912771 - B4A SINE B4 -10 282 214 3 1922 207 220 0 0 chr1 175282681 175282731 -21912701 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3 1922 351 359 73 44 chr1 175282753 175282778 -21912654 - RSINE1 SINE B4 0 165 141 3 1922 387 0 0 0 chr1 175282778 175282821 -21912611 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1922 351 359 73 44 chr1 175282821 175282932 -21912500 - RSINE1 SINE B4 -25 140 25 3 1922 243 253 177 0 chr1 175283039 175283118 -21912314 - B4A SINE B4 -194 98 6 3 1922 297 210 16 0 chr1 175283563 175283625 -21911807 + MIRm SINE MIR 214 276 0 3 1922 386 20 0 19 chr1 175284407 175284459 -21910973 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 3 1922 1116 59 0 0 chr1 175284459 175284594 -21910838 - B1_Mus1 SINE Alu -13 135 1 3 1922 246 226 0 0 chr1 175284798 175284851 -21910581 + L2a LINE L2 3374 3426 0 3 1922 633 160 40 0 chr1 175285175 175285325 -21910107 + (ATGGTG)n Simple_repeat Simple_repeat 1 156 0 3 1922 321 26 0 0 chr1 175285323 175285361 -21910071 + (CTG)n Simple_repeat Simple_repeat 1 38 0 3 1922 504 0 0 0 chr1 175286905 175286961 -21908471 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1922 435 38 0 0 chr1 175287716 175287769 -21907663 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1922 297 0 0 0 chr1 175288583 175288616 -21906816 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1922 513 115 0 0 chr1 175288616 175288712 -21906720 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 1922 222 37 0 0 chr1 175288904 175288931 -21906501 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1922 264 59 0 0 chr1 175289367 175289401 -21906031 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1922 573 137 8 17 chr1 175292937 175293056 -21902376 + CT-rich Low_complexity Low_complexity 2 119 0 3 1922 201 302 0 16 chr1 175296599 175296663 -21898769 + C-rich Low_complexity Low_complexity 4 66 0 3 1922 278 277 0 0 chr1 175297151 175297252 -21898180 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 1922 220 319 20 78 chr1 175300141 175300243 -21895189 - MIR3 SINE MIR 0 208 113 3 1922 388 366 83 22 chr1 175302688 175303051 -21892381 + L2c LINE L2 2954 3338 -49 3 1922 275 71 24 0 chr1 175303307 175303349 -21892083 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1922 260 299 0 0 chr1 175303350 175303417 -21892015 - ID2 SINE ID -11 72 6 3 1922 414 293 0 24 chr1 175303910 175304036 -21891396 - ID_B1 SINE B4 0 224 102 3 1922 204 339 32 41 chr1 175304595 175304718 -21890714 - L2 LINE L2 -535 2884 2763 3 1922 274 333 92 21 chr1 175305337 175305478 -21889954 - MIRb SINE MIR -14 254 104 3 1922 696 317 49 25 chr1 175305542 175305827 -21889605 - B4A SINE B4 0 292 1 3 1922 468 0 0 0 chr1 175306263 175306315 -21889117 + (TTA)n Simple_repeat Simple_repeat 3 54 0 3 1922 201 309 43 0 chr1 175306782 175306876 -21888556 - L3b LINE CR1 -302 180 83 3 1922 484 195 0 0 chr1 175308497 175308579 -21886853 - ID4 SINE ID 0 83 2 3 1922 22 35 0 0 chr1 175308647 175308676 -21886756 + AT_rich Low_complexity Low_complexity 1 29 0 3 1922 300 270 68 59 chr1 175308691 175308809 -21886623 + L1ME4a LINE L1 4546 4664 -1482 3 1922 25 0 0 0 chr1 175309105 175309130 -21886302 + AT_rich Low_complexity Low_complexity 1 25 0 3 1922 818 145 7 52 chr1 175309131 175309284 -21886148 - B1_Mus2 SINE Alu 0 147 2 3 1922 234 169 0 0 chr1 175309296 175309361 -21886071 + T-rich Low_complexity Low_complexity 1 65 0 3 1922 747 310 81 34 chr1 175309584 175310246 -21885186 + L1ME4a LINE L1 5280 5966 -158 3 1922 188 324 14 27 chr1 175310291 175310364 -21885068 + MIRc SINE MIR 73 144 -124 4 1922 1367 79 0 6 chr1 175310370 175310548 -21884884 + B2_Mm2 SINE B2 1 177 -18 4 1922 495 138 0 0 chr1 175310549 175310636 -21884796 + (TAAA)n Simple_repeat Simple_repeat 3 89 0 4 1922 521 311 66 14 chr1 175311141 175311353 -21884079 - MLT1A LTR MaLR -7 367 145 4 1922 22 35 0 0 chr1 175311478 175311507 -21883925 + AT_rich Low_complexity Low_complexity 1 29 0 4 1922 183 80 0 0 chr1 175312385 175312410 -21883022 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1922 447 214 0 0 chr1 175312437 175312563 -21882869 + (CA)n Simple_repeat Simple_repeat 1 126 0 4 1922 1007 212 41 18 chr1 175313484 175313705 -21881727 + URR1A DNA MER1_type 1 226 0 4 1922 1701 21 5 0 chr1 175313901 175314093 -21881339 + B2_Mm1t SINE B2 1 193 0 4 1922 419 76 68 17 chr1 175316071 175316155 -21879277 - B1_Mus1 SINE Alu 0 120 25 4 1922 516 111 0 0 chr1 175318455 175318545 -21876887 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 1922 183 170 0 0 chr1 175319637 175319684 -21875748 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1922 297 0 0 0 chr1 175319700 175319733 -21875699 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1922 395 118 0 14 chr1 175320461 175320530 -21874902 + tRNA-Arg-AGA tRNA tRNA 3 70 -6 4 1922 180 111 0 0 chr1 175321805 175321832 -21873600 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1922 4481 130 67 0 chr1 175323079 175323770 -21871662 - RMER19A LTR ERVK 0 737 1 4 1922 217 312 25 0 chr1 175323855 175323935 -21871497 + L2c LINE L2 3306 3387 0 4 1922 549 0 0 0 chr1 175326238 175326299 -21869133 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1922 210 279 0 42 chr1 175326655 175326726 -21868706 - L2c LINE L2 0 3387 3320 4 1922 207 333 10 50 chr1 175326865 175326966 -21868466 - L2c LINE L2 -259 3116 3020 4 1922 298 230 40 0 chr1 175328105 175328179 -21867253 - ID4_ SINE ID -5 78 2 4 1922 495 0 0 0 chr1 175328770 175328825 -21866607 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1922 507 17 0 0 chr1 175329428 175329488 -21865944 + (ATTTG)n Simple_repeat Simple_repeat 3 62 0 4 1922 414 265 0 29 chr1 175329489 175329594 -21865838 - PB1D10 SINE Alu -13 104 3 4 1922 673 189 71 164 chr1 175329641 175330020 -21865412 - Lx9 LINE L1 -4 7640 7297 4 1922 765 204 19 26 chr1 175330019 175330175 -21865257 + Lx9 LINE L1 7157 7311 -333 4 1922 609 61 0 0 chr1 175330799 175330881 -21864551 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1922 202 269 12 37 chr1 175330978 175331059 -21864373 - L2 LINE L2 -580 2839 2761 4 1922 636 227 64 0 chr1 175332349 175332490 -21862942 - MLT1A0 LTR MaLR 0 365 216 4 1922 246 185 0 18 chr1 175332698 175332753 -21862679 - MLT1A0 LTR MaLR -311 54 1 4 1922 307 284 181 47 chr1 175333091 175333456 -21861976 - L1ME3B LINE L1 -56 6184 5771 4 1922 200 194 0 0 chr1 175333496 175333532 -21861900 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1922 483 328 91 23 chr1 175333532 175333707 -21861725 - B3A SINE B2 -11 187 1 4 1922 183 80 0 0 chr1 175334397 175334422 -21861010 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1922 231 219 141 0 chr1 175334582 175334646 -21860786 - MIRb SINE MIR -79 189 117 4 1922 443 252 0 59 chr1 175335354 175335464 -21859968 + PB1D10 SINE Alu 5 108 -9 4 1922 594 0 0 0 chr1 175335464 175335530 -21859902 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1922 1119 70 21 7 chr1 175335964 175336108 -21859324 - B1_Mm SINE Alu -1 146 1 4 1922 7102 49 56 4 chr1 175336117 175337242 -21858190 - L1Md_F2 LINE L1 0 6582 5384 4 1922 908 155 7 7 chr1 175337335 175337478 -21857954 + B1_Mur4 SINE Alu 1 143 -7 4 1922 441 0 0 0 chr1 175337845 175337894 -21857538 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1922 1717 162 279 25 chr1 175337896 175338251 -21857181 - RLTR41 LTR ERV1 -1 445 1 4 1922 690 55 0 0 chr1 175338296 175338387 -21857045 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1922 1699 37 21 0 chr1 175338690 175338879 -21856553 - B2_Mm1t SINE B2 0 193 1 4 1922 255 153 45 45 chr1 175341546 175341635 -21853797 + (TAAA)n Simple_repeat Simple_repeat 4 92 0 4 1922 260 310 164 7 chr1 175341973 175342119 -21853313 + MIR SINE MIR 37 205 -57 4 1922 477 286 57 35 chr1 175342124 175342357 -21853075 - L1_Rod LINE L1 -648 5652 5343 4 1922 661 299 8 40 chr1 175342360 175342611 -21852821 + L1MA4 LINE L1 5688 5930 -370 4 1922 3517 45 2 2 chr1 175342765 175343165 -21852267 + MTB LTR MaLR 1 400 0 4 1922 258 332 97 71 chr1 175344122 175344391 -21851041 + MLT1I LTR MaLR 104 379 -32 4 1922 635 306 53 146 chr1 175344816 175344909 -21850523 + B4A SINE B4 1 80 -212 4 1922 183 42 0 0 chr1 175344909 175344933 -21850499 + (CCAA)n Simple_repeat Simple_repeat 1 24 0 4 1922 635 306 53 146 chr1 175344933 175345153 -21850279 + B4A SINE B4 81 286 -6 4 1922 252 0 0 0 chr1 175345153 175345181 -21850251 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1922 201 147 0 0 chr1 175345188 175345222 -21850210 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 1922 315 0 0 0 chr1 175345284 175345319 -21850113 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 4 1922 2796 116 64 5 chr1 175346356 175346762 -21848670 + RLTR23 LTR ERV1 1 430 0 4 1922 1918 160 48 20 chr1 175346976 175347119 -21848313 + ORR1C1 LTR MaLR 12 155 -223 4 1922 4528 38 4 4 chr1 175347119 175347622 -21847810 + RLTR1C LTR ERV1 1 503 0 4 1922 1918 160 48 20 chr1 175347622 175347835 -21847597 + ORR1C1 LTR MaLR 156 378 0 4 1922 228 35 0 0 chr1 175348143 175348172 -21847260 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1922 1097 93 0 7 chr1 175348175 175348316 -21847116 - B1_Mus2 SINE Alu -6 141 2 4 1922 267 310 54 8 chr1 175349130 175349260 -21846172 - Tigger7 DNA MER2_type -202 2289 2154 4 1922 210 71 0 0 chr1 175350302 175350330 -21845102 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1922 638 255 57 158 chr1 175350542 175350896 -21844536 + ORR1E LTR MaLR 42 359 0 4 1922 6330 76 26 18 chr1 175350896 175351972 -21843460 - L1VL2 LINE L1 -1717 1898 814 4 1922 22 80 0 0 chr1 175352064 175352114 -21843318 + AT_rich Low_complexity Low_complexity 1 50 0 4 1922 403 328 29 64 chr1 175352216 175352640 -21842792 - L1M5 LINE L1 -3512 2634 2222 4 1922 232 347 11 0 chr1 175352972 175353067 -21842365 - L1MB5 LINE L1 -26 6148 6053 4 1922 213 294 57 29 chr1 175353957 175354062 -21841370 - MIR SINE MIR -1 261 154 4 1922 388 281 243 44 chr1 175354171 175354488 -21840944 - Charlie5 DNA MER1_type -7 2617 2238 4 1922 240 202 138 12 chr1 175354496 175354576 -21840856 - Charlie5 DNA MER1_type -2515 109 20 4 1922 199 162 24 36 chr1 175354647 175354730 -21840702 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1922 1004 273 50 14 chr1 175354735 175355017 -21840415 - B4A SINE B4 0 292 1 4 1922 369 0 0 0 chr1 175355492 175355533 -21839899 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1922 279 79 0 0 chr1 175356335 175356373 -21839059 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 4 1922 543 144 0 40 chr1 175356373 175356464 -21838968 - B1_Mus2 SINE Alu -12 135 46 4 1922 254 207 17 90 chr1 175356453 175356539 -21838893 - B4A SINE B4 -204 88 4 4 1922 4563 161 69 95 chr1 175357245 175358050 -21837382 + RMER19B LTR ERVK 1 786 -116 4 1922 1428 82 27 16 chr1 175358050 175358235 -21837197 - B2_Mm2 SINE B2 -7 188 2 4 1922 4563 161 69 95 chr1 175358235 175358355 -21837077 + RMER19B LTR ERVK 787 902 0 4 1922 280 281 123 8 chr1 175359996 175360118 -21835314 - LTR45 LTR ERV1 0 525 390 4 1922 308 285 83 32 chr1 175360935 175361091 -21834341 + MER3 DNA MER1_type 40 203 -6 4 1922 1775 267 57 13 chr1 175361172 175361646 -21833786 + Lx5 LINE L1 6539 7033 -17 4 1922 252 350 72 43 chr1 175362126 175362334 -21833098 - MIRc SINE MIR -32 230 22 4 1922 25 0 0 0 chr1 175363412 175363437 -21831995 + AT_rich Low_complexity Low_complexity 1 25 0 4 1922 189 254 0 0 chr1 175363526 175363597 -21831835 + (CATA)n Simple_repeat Simple_repeat 4 74 0 4 1922 576 143 0 0 chr1 175363877 175363975 -21831457 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 1922 338 167 17 0 chr1 175363975 175364035 -21831397 + HAL1-3A_ME LINE L1 1975 2035 -823 4 1922 24 32 0 0 chr1 175365893 175365924 -21829508 + AT_rich Low_complexity Low_complexity 1 31 0 4 1922 716 308 26 81 chr1 175365989 175366297 -21829135 + B4A SINE B4 2 292 0 4 1922 286 270 11 0 chr1 175366298 175366476 -21828956 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1922 329 350 6 33 chr1 175366496 175366753 -21828679 + (CA)n Simple_repeat Simple_repeat 1 249 0 4 1922 323 314 151 13 chr1 175367133 175367365 -21828067 - LTR16A LTR ERVL -65 386 123 4 1922 302 354 34 39 chr1 175367854 175368060 -21827372 + MIRb SINE MIR 5 209 -59 4 1922 216 135 0 0 chr1 175368268 175368305 -21827127 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 1922 207 266 0 0 chr1 175368616 175368680 -21826752 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1922 409 300 30 0 chr1 175369423 175369523 -21825909 - ID_B1 SINE B4 -7 217 115 4 1922 271 319 43 8 chr1 175370418 175370535 -21824897 - L1MA9 LINE L1 -9 6303 6183 4 1922 246 95 0 0 chr1 175370537 175370579 -21824853 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1922 224 100 25 0 chr1 175370579 175370619 -21824813 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1922 708 45 0 0 chr1 175371181 175371269 -21824163 + (TCC)n Simple_repeat Simple_repeat 3 90 0 4 1922 253 317 95 158 chr1 175371340 175371846 -21823586 + MLT1N2 LTR MaLR 81 554 -8 4 1922 2140 55 0 15 chr1 175372019 175372279 -21823153 + L1Md_F2 LINE L1 6315 6570 -12 4 1922 257 310 39 20 chr1 175372734 175372836 -21822596 + PB1D7 SINE Alu 12 115 -5 4 1922 338 252 37 37 chr1 175373129 175373236 -21822196 + BC1_Mm scRNA scRNA 1 107 -45 4 1922 431 272 110 16 chr1 175373324 175373451 -21821981 - B1F1 SINE Alu -8 141 3 4 1922 240 261 72 52 chr1 175373657 175373744 -21821688 - PB1D7 SINE Alu -13 107 15 4 240 6448 114 47 2 chr1 175373744 175374661 -21820771 - RMER17B LTR ERVK 0 958 1 4 1923 1068 268 94 25 chr1 175374804 175375252 -21820180 + L1MC1 LINE L1 4315 4793 -1353 5 1923 582 242 150 0 chr1 175375273 175375426 -21820006 + B3 SINE B2 37 212 -4 5 1923 333 68 0 0 chr1 175375435 175375479 -21819953 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1923 651 112 0 0 chr1 175375493 175375591 -21819841 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 5 1923 1998 247 81 52 chr1 175375690 175376321 -21819111 - Lx6 LINE L1 -3 7457 6809 5 1923 633 268 89 20 chr1 175376409 175376559 -21818873 + RSINE1 SINE B4 2 158 -7 5 1923 403 237 11 34 chr1 175376560 175376739 -21818693 + CT-rich Low_complexity Low_complexity 6 180 0 5 1923 410 340 0 0 chr1 175376753 175376909 -21818523 + CT-rich Low_complexity Low_complexity 2 157 0 5 1923 1587 301 83 81 chr1 175376940 175378237 -21817195 + L1MC1 LINE L1 5028 6333 0 5 1923 573 283 0 65 chr1 175378749 175378919 -21816513 - MTE2b LTR MaLR -8 371 213 5 1923 367 274 108 0 chr1 175378942 175379044 -21816388 - MTE2b LTR MaLR -264 115 3 5 1923 454 286 18 0 chr1 175380723 175380835 -21814597 - MIRb SINE MIR -112 156 43 5 1923 264 263 44 146 chr1 175381011 175381216 -21814216 + L2 LINE L2 1699 1882 -1537 5 1923 289 310 103 1 chr1 175382522 175382650 -21812782 - L2a LINE L2 -10 3416 3222 5 1923 221 0 0 33 chr1 175382917 175382947 -21812485 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1923 197 300 48 39 chr1 175382992 175383096 -21812336 + MIR3 SINE MIR 8 112 -96 5 1923 240 298 0 0 chr1 175383411 175383468 -21811964 - ID4 SINE ID -20 63 7 5 1923 259 303 132 14 chr1 175384862 175385180 -21810252 + L1M4 LINE L1 4789 5150 -996 5 1923 705 24 0 0 chr1 175387155 175387238 -21808194 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1923 643 281 75 11 chr1 175387680 175387867 -21807565 + RMER30 DNA MER1_type 2 200 -2 5 1923 245 336 26 26 chr1 175388255 175388368 -21807064 - L1M3b LINE L1 -5179 1102 990 5 1923 504 0 0 0 chr1 175388608 175388664 -21806768 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1923 320 340 69 38 chr1 175389236 175389628 -21805804 - L1M3b LINE L1 -5868 413 10 5 1923 211 191 16 16 chr1 175389762 175389826 -21805606 + CT-rich Low_complexity Low_complexity 4 67 0 5 1923 225 358 96 64 chr1 175390181 175390399 -21805033 - LTR16A LTR ERVL 0 451 227 5 1923 185 65 32 0 chr1 175391082 175391113 -21804319 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1923 31 68 0 0 chr1 175392576 175392635 -21802797 + AT_rich Low_complexity Low_complexity 1 59 0 5 1923 397 237 25 42 chr1 175392705 175392824 -21802608 - PB1D9 SINE Alu -2 118 2 5 1923 186 71 0 0 chr1 175393012 175393040 -21802392 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1923 847 154 11 74 chr1 175393043 175393218 -21802214 - ORR1B2 LTR MaLR -198 169 6 5 1923 21 0 0 0 chr1 175393876 175393897 -21801535 + AT_rich Low_complexity Low_complexity 1 21 0 5 1923 480 99 0 0 chr1 175394377 175394448 -21800984 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1923 1031 64 7 0 chr1 175394457 175394597 -21800835 + (TTC)n Simple_repeat Simple_repeat 3 143 0 5 1923 3594 72 8 16 chr1 175395328 175395821 -21799611 + L1_Mus2 LINE L1 6076 6564 -2 5 1923 31 0 0 0 chr1 175395954 175395985 -21799447 + AT_rich Low_complexity Low_complexity 1 31 0 5 1923 427 262 0 23 chr1 175395985 175396114 -21799318 + RMER1C Other Other 1217 1342 0 5 1923 1231 173 83 0 chr1 175396205 175396471 -21798961 - Lx9 LINE L1 -7 7637 7350 5 1923 455 344 111 17 chr1 175396474 175396835 -21798597 + L1MCc LINE L1 81 475 -5948 5 1923 380 148 0 0 chr1 175396874 175396935 -21798497 + RMER6C LTR ERVK 1 61 -400 5 1923 904 175 76 8 chr1 175396925 175397180 -21798252 + RMER6C LTR ERVK 382 690 0 5 1923 2319 101 3 9 chr1 175397226 175397555 -21797877 + ORR1A2 LTR MaLR 1 327 0 5 1923 297 109 0 0 chr1 175399249 175399295 -21796137 + (TGGGGG)n Simple_repeat Simple_repeat 2 47 0 5 1923 661 247 13 0 chr1 175399733 175399887 -21795545 + Lx7 LINE L1 6705 6860 -836 5 1923 1749 147 36 65 chr1 175399895 175400080 -21795352 - RMER17C LTR ERVK -8 402 208 5 1923 648 0 0 0 chr1 175400080 175400152 -21795280 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1923 1749 147 36 65 chr1 175400152 175400380 -21795052 - RMER17C LTR ERVK -203 207 1 5 1923 1650 231 161 34 chr1 175400380 175400895 -21794537 + Lx7 LINE L1 6857 7432 -264 5 1923 411 21 0 0 chr1 175400895 175400943 -21794489 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1923 1650 231 20 84 chr1 175400943 175401097 -21794335 + Lx7 LINE L1 7433 7672 -24 5 1923 1104 78 14 0 chr1 175401097 175401238 -21794194 + B1_Mus1 SINE Alu 2 144 -4 5 1923 513 0 0 0 chr1 175401240 175401297 -21794135 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1923 321 231 12 88 chr1 175401297 175401319 -21794113 + Lx7 LINE L1 7673 7691 -5 5 1923 235 85 21 21 chr1 175401319 175401367 -21794065 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 5 1923 1035 251 112 16 chr1 175402549 175402914 -21792518 + L1_Rod LINE L1 5397 5796 -51 5 1923 1109 234 40 118 chr1 175402947 175403410 -21792022 - RLTR18B LTR ERVK -25 487 123 5 1923 251 255 0 0 chr1 175404708 175404755 -21790677 + C-rich Low_complexity Low_complexity 6 52 0 5 1923 1156 134 5 26 chr1 175404755 175404946 -21790486 - B2_Mm1t SINE B2 -1 192 6 5 1923 579 116 0 0 chr1 175404941 175405027 -21790405 - B2_Mm2 SINE B2 -108 87 2 5 1923 1167 112 0 0 chr1 175405031 175405210 -21790222 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 5 1923 990 130 11 6 chr1 175405234 175405412 -21790020 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 5 1923 488 299 21 28 chr1 175405435 175405576 -21789856 - B1_Mur1 SINE Alu -9 140 1 5 1923 318 107 0 0 chr1 175405878 175405934 -21789498 + (TCTG)n Simple_repeat Simple_repeat 3 58 0 5 1923 414 155 17 8 chr1 175405943 175406060 -21789372 + CT-rich Low_complexity Low_complexity 1 118 0 5 1923 482 340 68 85 chr1 175406060 175406353 -21789079 - B4 SINE B4 0 292 5 5 1923 17305 82 9 22 chr1 175406457 175410107 -21785325 + Lx3_Mus LINE L1 3421 7009 0 5 1923 216 97 0 0 chr1 175410190 175410221 -21785211 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1923 1732 238 73 30 chr1 175412815 175413308 -21782124 + RLTR17 LTR ERVK 105 618 -74 5 1923 23 0 0 0 chr1 175413319 175413342 -21782090 + AT_rich Low_complexity Low_complexity 1 23 0 5 1923 544 294 78 88 chr1 175415123 175415418 -21780014 + B4A SINE B4 1 292 0 5 1923 467 284 8 8 chr1 175416169 175416286 -21779146 - PB1D10 SINE Alu 0 117 1 5 1923 711 258 5 0 chr1 175417887 175418077 -21777355 - Lx3C LINE L1 -109 6867 6677 5 1923 24 0 0 0 chr1 175418510 175418534 -21776898 + AT_rich Low_complexity Low_complexity 1 24 0 5 1923 240 111 0 0 chr1 175418895 175418940 -21776492 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 5 1923 405 95 0 0 chr1 175418947 175419010 -21776422 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1923 21 0 0 0 chr1 175419388 175419409 -21776023 + AT_rich Low_complexity Low_complexity 1 21 0 5 1923 405 54 0 0 chr1 175421184 175421240 -21774192 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1923 285 89 0 0 chr1 175421240 175421285 -21774147 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1923 8626 101 23 4 chr1 175422343 175424637 -21770795 + Lx3_Mus LINE L1 4671 7009 0 5 1923 324 175 0 0 chr1 175424753 175424816 -21770616 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1923 954 189 12 0 chr1 175425101 175425270 -21770162 + URR1A DNA MER1_type 1 171 -55 5 1923 7256 80 6 10 chr1 175425270 175426917 -21768515 + L1_Mus2 LINE L1 4924 6566 0 5 1923 821 126 6 0 chr1 175427332 175427507 -21767925 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 5 1923 1271 311 63 60 chr1 175427611 175428182 -21767250 - RMER15 LTR ERVL -2 573 1 5 1923 588 262 95 53 chr1 175428312 175428574 -21766858 + Lx8 LINE L1 6590 6862 -611 5 1923 1250 76 0 9 chr1 175429117 175429342 -21766090 + (TTTC)n Simple_repeat Simple_repeat 1 222 0 5 1923 802 163 11 11 chr1 175429344 175429518 -21765914 + CT-rich Low_complexity Low_complexity 1 174 0 5 1923 1107 129 0 0 chr1 175429518 175429696 -21765736 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1923 954 223 42 5 chr1 175430139 175430351 -21765081 + URR1A DNA MER1_type 7 226 0 5 1923 3421 263 44 67 chr1 175430478 175432394 -21763038 + Lx7 LINE L1 900 2759 -3121 5 1923 1919 141 62 87 chr1 175432445 175432848 -21762584 - RLTR9C LTR ERVK 0 393 1 5 1923 821 258 84 146 chr1 175432884 175433370 -21762062 + RLTR12B LTR ERVK 47 502 -26 5 1923 2429 257 43 22 chr1 175433446 175434373 -21761059 + Lx7 LINE L1 2818 3764 -2116 5 1923 2544 254 88 30 chr1 175434364 175434693 -21760739 + Lx7 LINE L1 4268 4614 -1266 5 1923 387 0 0 0 chr1 175434693 175434736 -21760696 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1923 2544 254 88 30 chr1 175434736 175435492 -21759940 + Lx7 LINE L1 4615 5415 -465 5 1923 2306 162 154 75 chr1 175435485 175436003 -21759429 - L1_Mur3 LINE L1 -491 5389 4802 5 1923 1121 118 0 6 chr1 175436003 175436182 -21759250 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 1923 2306 162 154 75 chr1 175436182 175436365 -21759067 - L1_Mur3 LINE L1 -1079 4801 4633 5 1923 528 45 0 0 chr1 175436365 175436432 -21759000 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1923 1759 261 91 15 chr1 175436434 175437286 -21758146 + Lx7 LINE L1 5425 6350 -1346 5 1923 462 103 0 0 chr1 175437308 175437386 -21758046 + (GA)n Simple_repeat Simple_repeat 2 79 0 5 1923 310 109 0 0 chr1 175440959 175441005 -21754427 - Lx2 LINE L1 -1003 5994 5949 5 1923 5101 118 29 26 chr1 175441000 175441723 -21753709 + Lx2 LINE L1 5983 6705 -292 5 1923 3019 90 30 49 chr1 175441723 175442214 -21753218 - RLTR45 LTR ERVK 0 482 1 5 1923 5101 118 29 26 chr1 175442214 175442374 -21753058 + Lx2 LINE L1 6706 6869 -128 5 1923 197 33 33 0 chr1 175442389 175442419 -21753013 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1923 2699 72 36 0 chr1 175442438 175442801 -21752631 - L1_Mus1 LINE L1 0 6567 6192 5 1923 4058 96 0 0 chr1 175442818 175443510 -21751922 + L1_Mus1 LINE L1 5466 6158 -409 5 1923 2163 130 62 0 chr1 175443510 175443865 -21751567 + Lx3_Mus LINE L1 6620 6996 -13 5 1923 317 125 18 0 chr1 175444009 175444065 -21751367 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1923 1236 183 9 0 chr1 175444339 175444563 -21750869 + URR1A DNA MER1_type 1 226 0 5 1923 450 0 0 0 chr1 175445577 175445627 -21749805 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 5 1923 580 308 71 40 chr1 175445640 175445923 -21749509 + MTD LTR MaLR 135 405 -14 5 1923 1901 115 11 0 chr1 175446412 175446690 -21748742 + RLTR33 LTR ERVK 1 281 -397 5 1923 1358 151 131 10 chr1 175446698 175447092 -21748340 + RMER17C LTR ERVK 16 439 -519 5 1923 2008 214 8 3 chr1 175447091 175447479 -21747953 + RLTR33 LTR ERVK 289 678 0 5 1923 818 262 91 121 chr1 175447514 175448149 -21747283 - RLTR18 LTR ERVK 0 616 1 5 1923 510 309 26 4 chr1 175448728 175448959 -21746473 - Lx8 LINE L1 -641 6832 6597 5 1923 425 293 16 8 chr1 175449244 175449368 -21746064 - MLT1A0 LTR MaLR -2 363 239 6 1923 1972 163 83 10 chr1 175449397 175449782 -21745650 + MTC LTR MaLR 1 413 -8 6 1923 226 378 65 55 chr1 175450448 175450647 -21744785 - MLT1A0 LTR MaLR -201 207 7 6 1923 779 296 137 35 chr1 175450724 175451067 -21744365 + MTEa LTR MaLR 1 378 -1 6 1923 28 0 0 0 chr1 175451983 175452011 -21743421 + AT_rich Low_complexity Low_complexity 1 28 0 6 1923 532 248 9 9 chr1 175452631 175452741 -21742691 - B1F SINE Alu -38 111 2 6 1923 1639 221 106 84 chr1 175453342 175453851 -21741581 + MT2A LTR ERVL 1 520 -13 6 1923 477 0 0 0 chr1 175454257 175454310 -21741122 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1923 1289 256 131 8 chr1 175456104 175456215 -21739217 + MTD LTR MaLR 1 114 -305 6 1923 375 60 0 0 chr1 175456215 175456265 -21739167 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 1923 1289 256 131 8 chr1 175456265 175456504 -21738928 + MTD LTR MaLR 115 393 -26 6 1923 311 289 13 0 chr1 175457678 175457754 -21737678 - RSINE1 SINE B4 -85 80 4 6 1923 237 321 24 12 chr1 175458824 175458909 -21736523 - PB1D10 SINE Alu -9 108 23 6 1923 25 31 0 0 chr1 175459073 175459105 -21736327 + AT_rich Low_complexity Low_complexity 1 32 0 6 1923 1793 153 61 64 chr1 175459978 175460355 -21735077 - ORR1C1 LTR MaLR 0 378 3 6 1923 1246 266 82 33 chr1 175461413 175461805 -21733627 - MTD LTR MaLR -8 411 1 6 1923 2180 249 32 24 chr1 175462721 175462792 -21732640 + Lx7 LINE L1 5906 5974 -1722 6 1923 1255 131 47 0 chr1 175462792 175463006 -21732426 - URR1A DNA MER1_type -2 224 1 6 1923 2180 249 32 24 chr1 175463006 175463564 -21731868 + Lx7 LINE L1 5975 6540 -1156 6 1923 58 28 0 0 chr1 175463758 175463830 -21731602 + AT_rich Low_complexity Low_complexity 1 72 0 6 1923 1051 222 42 92 chr1 175464044 175464426 -21731006 + RMER16 LTR ERVK 171 533 0 6 1923 3116 114 4 2 chr1 175464481 175464945 -21730487 + Lx2 LINE L1 6532 6996 -1 6 1923 200 178 0 43 chr1 175465862 175465909 -21729523 + CT-rich Low_complexity Low_complexity 2 46 0 6 1923 459 0 0 0 chr1 175465937 175465988 -21729444 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1923 450 0 0 0 chr1 175466631 175466681 -21728751 + (CTA)n Simple_repeat Simple_repeat 1 50 0 6 1923 415 129 0 41 chr1 175466688 175466761 -21728671 - B1_Mur1 SINE Alu -1 148 79 6 1923 448 230 271 6 chr1 175467793 175467962 -21727470 - B3 SINE B2 -1 215 2 6 1923 544 240 42 72 chr1 175468017 175468210 -21727222 - RLTR23 LTR ERV1 0 430 244 6 1923 8729 97 13 31 chr1 175468528 175470321 -21725111 - Lx3_Mus LINE L1 0 7009 5260 6 1923 33393 34 20 8 chr1 175470471 175475538 -21719894 + L1Md_T LINE L1 462 5586 -297 6 1923 8189 47 1 0 chr1 175475538 175476533 -21718899 + L1Md_T LINE L1 5587 6582 0 6 1923 468 0 0 0 chr1 175476925 175476977 -21718455 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1923 816 30 0 0 chr1 175476977 175477075 -21718357 + (GA)n Simple_repeat Simple_repeat 2 100 0 6 1923 5949 123 44 24 chr1 175478065 175479060 -21716372 - Lx2 LINE L1 0 6997 5983 6 1923 211 150 49 16 chr1 175479405 175479466 -21715966 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 6 1923 32846 86 5 7 chr1 175481177 175487350 -21708082 - L1Md_F2 LINE L1 0 6582 417 6 1923 675 0 0 0 chr1 175487642 175487717 -21707715 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1923 1613 257 92 21 chr1 175487733 175488592 -21706840 - Lx7 LINE L1 -1119 6354 5425 6 1923 549 0 0 0 chr1 175488596 175488657 -21706775 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1923 297 71 0 0 chr1 175488659 175488701 -21706731 + L1_Mur3 LINE L1 4637 4678 -1202 6 1923 1163 62 0 0 chr1 175488701 175488847 -21706585 + B1_Mus2 SINE Alu 2 147 0 6 1923 207 100 0 0 chr1 175488847 175488877 -21706555 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1923 1972 184 52 5 chr1 175488877 175489030 -21706402 + L1_Mur3 LINE L1 4658 4828 -1052 6 1923 1007 55 14 0 chr1 175489030 175489176 -21706256 + (TTTC)n Simple_repeat Simple_repeat 4 151 0 6 1923 1972 199 117 5 chr1 175489176 175489620 -21705812 + L1_Mur3 LINE L1 4828 5392 -485 6 1923 2743 242 83 36 chr1 175489607 175490368 -21705064 - Lx7 LINE L1 -464 5416 4623 6 1923 297 0 0 0 chr1 175490368 175490401 -21705031 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1923 2743 242 83 36 chr1 175490401 175490736 -21704696 - Lx7 LINE L1 -1258 4622 4270 6 1923 1166 271 61 6 chr1 175490727 175491253 -21704179 - Lx7 LINE L1 -2116 3764 3210 6 1923 517 186 38 70 chr1 175491285 175491496 -21703936 + ETnERV2-int LTR ERVK 1100 1194 -6212 6 1923 2336 170 64 12 chr1 175491497 175492063 -21703369 + ETnERV2-int LTR ERVK 632 1666 -5740 6 1923 2477 176 29 2 chr1 175492090 175492579 -21702853 + ETnERV2-int LTR ERVK 2496 2997 -4409 6 1923 870 152 6 18 chr1 175492579 175492746 -21702686 + RLTR13D1 LTR ERVK 486 650 -156 6 1923 3611 192 28 43 chr1 175493254 175495273 -21700159 + ETnERV2-int LTR ERVK 2356 4085 -3321 6 1923 401 123 14 0 chr1 175495492 175495565 -21699867 + ETnERV2-int LTR ERVK 7332 7405 -1 6 1923 1021 178 50 0 chr1 175495565 175495745 -21699687 + RLTR9C LTR ERVK 1 189 -204 6 1923 2447 169 59 3 chr1 175495745 175496303 -21699129 + L1_Mur1 LINE L1 231 1118 -5864 6 1923 7667 77 5 5 chr1 175496303 175497326 -21698106 - RLTR13D2 LTR ERVK 0 1023 1 6 1923 3011 188 78 9 chr1 175497337 175498203 -21697229 - ETnERV3-int LTR ERVK -31 5777 4852 6 1923 320 342 11 5 chr1 175498737 175498925 -21696507 - ETnERV3-int LTR ERVK -1537 5716 5528 6 1923 672 238 33 19 chr1 175498955 175499169 -21696263 - ETnERV3-int LTR ERVK -957 4851 4635 6 1923 1159 338 30 23 chr1 175499187 175499963 -21695469 - MMTV-int LTR ERVK -1975 5278 4498 6 1923 2647 329 35 40 chr1 175500002 175502625 -21692807 - MMTV-int LTR ERVK -2789 4464 392 1 1923 1938 128 44 13 chr1 175502628 175502945 -21692487 - IAPEY3_LTR LTR ERVK -5 327 1 2 1923 1822 99 15 0 chr1 175502945 175503207 -21692225 - IAPEY3-int LTR ERVK 0 7680 7415 2 240 51398 85 9 3 chr1 175503207 175510436 -21684996 - IAPEY3-int LTR ERVK -407 7273 3 2 1924 2078 116 12 18 chr1 175510436 175510769 -21684663 - IAPEY3_LTR LTR ERVK -1 331 1 2 1924 1066 294 34 34 chr1 175510769 175511552 -21683880 - MMTV-int LTR ERVK -7009 397 178 1 1924 225 0 0 0 chr1 175511552 175511577 -21683855 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 1924 545 172 50 25 chr1 175512238 175512357 -21683075 - MMTV-int LTR ERVK -7246 160 39 1 1924 459 0 0 0 chr1 175512357 175512408 -21683024 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1924 7569 73 11 5 chr1 175512450 175513467 -21681965 - RLTR13D2 LTR ERVK 0 1023 1 5 1924 29440 104 6 8 chr1 175513467 175518207 -21677225 + Lx3_Mus LINE L1 1181 5907 -1102 6 1924 495 0 0 0 chr1 175518207 175518262 -21677170 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1924 8001 108 53 9 chr1 175518262 175519258 -21676174 + Lx3_Mus LINE L1 5908 7009 0 6 1924 222 222 0 0 chr1 175519339 175519393 -21676039 + A-rich Low_complexity Low_complexity 1 54 0 8 1924 1650 259 73 29 chr1 175521215 175521707 -21673725 + RLTR17 LTR ERVK 105 618 -74 9 1924 525 309 85 44 chr1 175523522 175523793 -21671639 + B4A SINE B4 1 282 -10 1 1924 485 287 9 0 chr1 175524580 175524695 -21670737 - PB1D10 SINE Alu -1 116 1 1 1924 825 266 86 4 chr1 175525846 175526125 -21669307 - Lx3C LINE L1 -3 6973 6672 1 1924 22 35 0 0 chr1 175526556 175526585 -21668847 + AT_rich Low_complexity Low_complexity 1 29 0 1 1924 200 167 48 0 chr1 175526942 175526984 -21668448 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 1 1924 471 35 0 0 chr1 175526988 175527045 -21668387 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1924 23 0 0 0 chr1 175527425 175527448 -21667984 + AT_rich Low_complexity Low_complexity 1 23 0 1 1924 315 49 0 0 chr1 175529223 175529264 -21666168 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1924 8370 108 24 5 chr1 175530339 175532619 -21662813 + Lx3_Mus LINE L1 4676 7001 -8 1 1924 522 233 0 0 chr1 175532756 175532889 -21662543 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1924 878 198 18 0 chr1 175533176 175533343 -21662089 + URR1A DNA MER1_type 2 171 -55 2 1924 6928 91 8 6 chr1 175533343 175534984 -21660448 + L1_Mus2 LINE L1 4924 6653 -1 2 1924 243 88 0 0 chr1 175535373 175535407 -21660025 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 2 1924 531 0 0 0 chr1 175535410 175535469 -21659963 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2 1924 1273 312 63 56 chr1 175535571 175536142 -21659290 - RMER15 LTR ERVL 0 575 1 2 1924 619 275 108 5 chr1 175536317 175536529 -21658903 + Lx8 LINE L1 6629 6862 -611 2 1924 1071 102 6 17 chr1 175536894 175537073 -21658359 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2 1924 603 0 0 0 chr1 175537075 175537142 -21658290 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 2 1924 681 262 152 0 chr1 175537494 175537685 -21657747 + URR1A DNA MER1_type 6 225 -1 2 1924 1664 262 57 28 chr1 175537813 175538772 -21656660 + Lx7 LINE L1 900 1875 -4005 2 1924 1460 48 4 35 chr1 175538838 175539391 -21656041 + (TATATG)n Simple_repeat Simple_repeat 1 535 0 3 1924 1354 33 0 32 chr1 175539403 175539589 -21655843 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 1924 881 43 98 6 chr1 175539603 175539766 -21655666 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 3 1924 3684 207 16 45 chr1 175539970 175541670 -21653762 - MMETn-int LTR ERVK -1998 3408 2356 3 1924 1808 266 47 18 chr1 175541670 175542442 -21652990 + Lx7 LINE L1 2971 3764 -2116 2 1924 709 242 81 73 chr1 175542433 175542816 -21652616 + Lx7 LINE L1 4268 4653 -1227 2 1924 6583 43 48 4 chr1 175542828 175543647 -21651785 + RLTR13A LTR ERVK 1 855 0 3 1924 1316 263 80 16 chr1 175543661 175544175 -21651257 + Lx7 LINE L1 4870 5416 -464 2 1924 2220 157 268 10 chr1 175544168 175544624 -21650808 - L1_Mur3 LINE L1 -491 5389 4828 3 1924 693 0 0 0 chr1 175544624 175544701 -21650731 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 3 1924 2220 168 52 9 chr1 175544701 175544871 -21650561 - L1_Mur3 LINE L1 -1053 4827 4638 3 1924 279 113 0 0 chr1 175544876 175544929 -21650503 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1924 1620 261 73 16 chr1 175545014 175545765 -21649667 + Lx7 LINE L1 5524 6331 -1365 2 1924 837 0 0 0 chr1 175545807 175545900 -21649532 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 1924 30845 89 5 6 chr1 175546192 175551371 -21644061 + L1Md_F2 LINE L1 417 5586 -297 3 1924 7402 75 3 8 chr1 175551372 175552372 -21643060 + L1Md_F2 LINE L1 5588 6582 0 3 1924 266 122 0 0 chr1 175554449 175554490 -21640942 - Lx2 LINE L1 -1003 5994 5954 3 1924 6155 121 30 28 chr1 175554490 175555425 -21640007 + Lx2 LINE L1 5983 6921 -76 3 1924 7704 50 3 23 chr1 175555425 175556423 -21639009 - RLTR13A3 LTR ERVK 0 978 1 3 1924 849 129 29 41 chr1 175556423 175556500 -21638932 + Lx2 LINE L1 6922 6997 0 3 1924 612 62 0 0 chr1 175557409 175557490 -21637942 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1924 5799 127 12 7 chr1 175557573 175558478 -21636954 + Lx3_Mus LINE L1 6100 7009 0 4 1924 516 215 47 40 chr1 175558838 175558988 -21636444 + RLTR23 LTR ERV1 280 430 0 4 1924 451 205 272 6 chr1 175559043 175559212 -21636220 + B3 SINE B2 2 215 -1 4 1924 377 287 40 0 chr1 175559474 175559575 -21635857 + PB1D7 SINE Alu 6 110 -10 4 1924 334 136 29 43 chr1 175560282 175560351 -21635081 + B1_Mus2 SINE Alu 79 146 -1 4 1924 366 80 0 0 chr1 175560352 175560402 -21635030 + (TAG)n Simple_repeat Simple_repeat 1 50 0 4 1924 299 123 35 0 chr1 175560548 175560605 -21634827 + T-rich Low_complexity Low_complexity 2 60 0 4 1924 516 32 0 0 chr1 175561089 175561151 -21634281 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1924 200 178 0 43 chr1 175561179 175561226 -21634206 + GA-rich Low_complexity Low_complexity 2 46 0 4 1924 2992 118 18 2 chr1 175562139 175562597 -21632835 - Lx2 LINE L1 -1 6996 6532 5 1924 991 204 42 50 chr1 175562652 175562935 -21632497 - RMER16 LTR ERVK 0 533 253 5 1924 54 0 0 0 chr1 175563255 175563309 -21632123 + AT_rich Low_complexity Low_complexity 1 54 0 5 1924 2317 238 31 28 chr1 175563504 175564063 -21631369 - Lx7 LINE L1 -1156 6540 5975 5 1924 1041 151 20 110 chr1 175564063 175564309 -21631123 + URR1A DNA MER1_type 1 224 -2 5 1924 2317 238 31 28 chr1 175564309 175564392 -21631040 - Lx7 LINE L1 -1722 5974 5896 5 1924 1249 264 81 36 chr1 175565282 175565675 -21629757 + MTD LTR MaLR 1 411 -8 5 1924 1692 134 66 112 chr1 175566730 175567124 -21628308 + ORR1C1 LTR MaLR 3 378 0 5 1924 25 31 0 0 chr1 175567999 175568031 -21627401 + AT_rich Low_complexity Low_complexity 1 32 0 5 1924 310 293 12 0 chr1 175568617 175568699 -21626733 - B4A SINE B4 -208 84 2 5 1924 305 316 13 0 chr1 175569351 175569427 -21626005 + RSINE1 SINE B4 4 80 -85 5 1924 5542 114 3 21 chr1 175569469 175570339 -21625093 - RLTR13A LTR ERVK 0 855 1 6 1924 23 0 0 0 chr1 175570358 175570381 -21625051 + AT_rich Low_complexity Low_complexity 1 23 0 6 1924 221 351 18 0 chr1 175570644 175570701 -21624731 + ID4_ SINE ID 26 83 0 6 1924 687 267 75 5 chr1 175571442 175571693 -21623739 - MTD LTR MaLR -14 405 125 6 1924 474 65 0 0 chr1 175571693 175571755 -21623677 + (CAA)n Simple_repeat Simple_repeat 2 63 0 6 1924 582 308 65 15 chr1 175571755 175571866 -21623566 - MTD LTR MaLR -295 124 2 6 1924 531 0 0 0 chr1 175573625 175573684 -21621748 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1924 992 254 126 92 chr1 175574084 175574586 -21620846 - MT2A LTR ERVL -14 519 1 6 1924 503 275 9 9 chr1 175575188 175575298 -21620134 + B1F SINE Alu 2 111 -38 6 1924 24 67 0 0 chr1 175575316 175575361 -21620071 + AT_rich Low_complexity Low_complexity 1 45 0 6 1924 22 0 0 0 chr1 175575916 175575938 -21619494 + AT_rich Low_complexity Low_complexity 1 22 0 6 1924 842 307 122 20 chr1 175576843 175577186 -21618246 - MTE2b LTR MaLR -1 378 1 7 1924 1936 162 94 11 chr1 175578124 175578505 -21616927 - MTC LTR MaLR -8 413 1 7 1924 425 293 16 8 chr1 175578534 175578658 -21616774 + MLT1A0 LTR MaLR 239 363 -2 7 1924 495 313 26 4 chr1 175578943 175579174 -21616258 + Lx8 LINE L1 6597 6832 -641 7 1924 900 259 87 118 chr1 175579753 175580389 -21615043 + RLTR18 LTR ERVK 1 616 0 7 1924 2035 216 5 3 chr1 175580424 175580813 -21614619 - RLTR33 LTR ERVK 0 678 289 7 1924 1350 169 111 17 chr1 175580812 175581227 -21614205 - RMER17C LTR ERVK -519 439 16 7 1924 1844 122 11 0 chr1 175581235 175581513 -21613919 - RLTR33 LTR ERVK -397 281 1 7 1924 509 317 73 54 chr1 175582002 175582292 -21613140 - MTD LTR MaLR -14 405 135 7 1924 576 0 0 0 chr1 175582305 175582369 -21613063 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 7 1924 191 307 12 62 chr1 175582762 175582842 -21612590 - L3b LINE CR1 -66 416 341 7 1924 1218 179 14 0 chr1 175583373 175583596 -21611836 - URR1A DNA MER1_type 0 226 1 8 1924 351 127 0 0 chr1 175583907 175583970 -21611462 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1924 1335 126 263 10 chr1 175584078 175584383 -21611049 - Lx3_Mus LINE L1 -8 7001 6620 8 1924 3980 91 20 0 chr1 175584376 175585062 -21610370 - L1_Mus1 LINE L1 -402 6165 5466 8 1924 2643 82 33 0 chr1 175585079 175585443 -21609989 + L1_Mus1 LINE L1 6192 6567 0 8 1924 22 35 0 0 chr1 175585443 175585472 -21609960 + AT_rich Low_complexity Low_complexity 1 29 0 8 1924 5096 122 31 17 chr1 175585486 175586361 -21609071 - Lx2 LINE L1 -128 6869 5983 8 1924 246 93 93 0 chr1 175586351 175586394 -21609038 + Lx LINE L1 5940 5986 -668 8 1924 429 36 0 0 chr1 175589934 175589989 -21605443 + (TC)n Simple_repeat Simple_repeat 1 55 0 8 1924 1679 270 88 17 chr1 175590029 175590887 -21604545 - Lx7 LINE L1 -1346 6350 5425 8 1924 429 36 0 0 chr1 175590889 175590944 -21604488 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1924 2449 164 17 6 chr1 175590948 175591127 -21604305 + L1_Mur3 LINE L1 4637 4819 -1061 9 1924 1107 80 0 0 chr1 175591127 175591278 -21604154 + (TC)n Simple_repeat Simple_repeat 2 152 0 9 1924 2449 206 80 6 chr1 175591278 175591739 -21603693 + L1_Mur3 LINE L1 4820 5393 -490 9 1924 2625 256 69 33 chr1 175591732 175592841 -21602591 - Lx7 LINE L1 -464 5416 4268 8 1924 2552 242 58 27 chr1 175592832 175593179 -21602253 - Lx7 LINE L1 -2116 3764 3379 8 1924 246 62 0 0 chr1 175593179 175593211 -21602221 + (TA)n Simple_repeat Simple_repeat 1 32 0 9 1924 2552 242 58 27 chr1 175593211 175593782 -21601650 - Lx7 LINE L1 -2502 3378 2819 8 1924 780 257 92 135 chr1 175593883 175594342 -21601090 - RLTR12B LTR ERVK -43 485 47 9 1924 1717 156 50 151 chr1 175594378 175594815 -21600617 + RLTR9C LTR ERVK 1 393 0 9 1924 297 161 0 75 chr1 175594847 175594914 -21600518 + ETnERV2-int LTR ERVK 43 104 -4740 9 1924 281 261 80 60 chr1 175594945 175595145 -21600287 + ETnERV2-int LTR ERVK 169 372 -2942 9 1924 423 118 19 106 chr1 175595147 175595251 -21600181 + ETnERV2-int LTR ERVK 1100 1194 -6212 9 1924 2289 165 48 14 chr1 175595252 175595816 -21599616 + ETnERV2-int LTR ERVK 632 1635 -5771 9 1924 582 188 43 0 chr1 175595843 175595960 -21599472 + ETnERV2-int LTR ERVK 2496 2617 -4789 9 1924 3719 166 38 22 chr1 175596241 175597126 -21598306 + ETnERV2-int LTR ERVK 2404 4085 -3321 9 1924 3604 192 15 51 chr1 175597112 175598256 -21597176 + ETnERV2-int LTR ERVK 2370 3722 -1122 9 1924 425 110 14 0 chr1 175598467 175598540 -21596892 + ETnERV2-int LTR ERVK 7332 7405 -1 9 1924 1748 154 57 121 chr1 175598540 175598960 -21596472 + RLTR9C LTR ERVK 1 393 0 9 1924 726 297 0 25 chr1 175598961 175599206 -21596226 - Lx7 LINE L1 -3061 2819 2581 8 1924 1970 252 49 91 chr1 175599220 175600565 -21594867 - Lx7 LINE L1 -3704 2176 900 8 1924 937 249 32 18 chr1 175600691 175600908 -21594524 - URR1B DNA MER1_type 0 225 6 9 1924 1097 128 0 6 chr1 175601305 175601486 -21593946 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 9 1924 1913 37 12 0 chr1 175601486 175601729 -21593703 - L1Md_F3 LINE L1 -148 6436 6191 9 1924 7176 98 17 10 chr1 175601726 175602874 -21592558 - L1_Mur1 LINE L1 -54 5832 4676 9 1924 435 132 0 0 chr1 175603940 175604031 -21591401 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 1924 24 0 0 0 chr1 175605797 175605821 -21589611 + AT_rich Low_complexity Low_complexity 1 24 0 1 1924 441 0 0 0 chr1 175606201 175606250 -21589182 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1924 198 128 0 0 chr1 175606257 175606296 -21589136 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1924 26 0 0 0 chr1 175606658 175606684 -21588748 + AT_rich Low_complexity Low_complexity 1 26 0 1 1924 859 255 86 4 chr1 175607114 175607393 -21588039 + Lx3C LINE L1 6672 6973 -3 1 1924 469 284 35 0 chr1 175608540 175608656 -21586776 + PB1D7 SINE Alu 1 120 0 1 1924 324 48 0 0 chr1 175609400 175609442 -21585990 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1924 758 322 83 40 chr1 175609445 175609723 -21585709 - B4A SINE B4 -2 290 1 1 1924 1137 54 0 0 chr1 175610974 175611123 -21584309 - L1Md_A LINE L1 -1 6581 6433 1 1924 1630 234 106 38 chr1 175611694 175612192 -21583240 - RLTR17 LTR ERVK -74 618 87 1 1924 210 100 57 57 chr1 175613993 175614046 -21581386 + T-rich Low_complexity Low_complexity 2 54 0 1 1924 8458 92 83 2 chr1 175614127 175615123 -21580309 - Lx3_Mus LINE L1 0 7009 5909 1 1924 387 0 0 0 chr1 175615123 175615166 -21580266 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1924 29478 99 14 9 chr1 175615166 175619897 -21575535 - Lx3_Mus LINE L1 -1101 5908 1182 1 1924 5860 75 6 15 chr1 175619898 175620709 -21574723 + RLTR13D2 LTR ERVK 1 804 -219 1 1924 624 285 17 17 chr1 175620728 175620903 -21574529 + MMTV-int LTR ERVK 1 175 -7231 1 1924 3255 343 48 40 chr1 175621549 175625746 -21569686 + MMTV-int LTR ERVK 1050 5278 -1975 1 1924 784 210 47 23 chr1 175625787 175626002 -21569430 + MMTV-int LTR ERVK 5450 5669 -1575 1 1924 317 342 11 5 chr1 175626014 175626202 -21569230 + MMTV-int LTR ERVK 5528 5716 -1537 1 1924 2979 183 88 9 chr1 175626739 175627598 -21567834 + ETnERV3-int LTR ERVK 4852 5777 -31 1 1924 7864 70 4 6 chr1 175627609 175628634 -21566798 + RLTR13D2 LTR ERVK 1 1023 0 1 1924 1441 184 60 31 chr1 175628634 175629181 -21566251 - L1_Mur1 LINE L1 -5864 1118 206 1 1924 506 284 61 95 chr1 175629457 175629724 -21565708 + B4A SINE B4 1 257 -35 1 1924 270 106 0 0 chr1 175629724 175629771 -21565661 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1924 506 284 61 95 chr1 175629771 175629799 -21565633 + B4A SINE B4 258 285 -7 1 1924 572 234 78 28 chr1 175630269 175630410 -21565022 + B1_Mur1 SINE Alu 1 148 -1 1 1924 1120 86 11 0 chr1 175630425 175630600 -21564832 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 1 1924 477 182 0 0 chr1 175630602 175630701 -21564731 + GA-rich Low_complexity Low_complexity 4 102 0 1 1924 970 125 51 40 chr1 175630702 175630877 -21564555 + B2_Mm1t SINE B2 2 178 -15 1 1924 519 17 0 0 chr1 175630877 175630937 -21564495 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1924 318 108 15 30 chr1 175630937 175631004 -21564428 + GA-rich Low_complexity Low_complexity 3 68 0 1 1924 1200 257 50 92 chr1 175632277 175632765 -21562667 + RLTR18B LTR ERVK 123 613 -3 1 1924 1111 252 102 10 chr1 175632767 175633167 -21562265 - L1_Rod LINE L1 -13 5834 5398 1 1924 254 252 15 66 chr1 175634380 175634398 -21561034 - Lx7 LINE L1 -21 7439 7425 1 1924 1083 96 0 0 chr1 175634398 175634544 -21560888 - B1_Mus1 SINE Alu -1 147 2 1 1924 1387 253 61 61 chr1 175634544 175634779 -21560653 - Lx7 LINE L1 -24 7672 7375 1 1924 315 49 0 0 chr1 175634779 175634820 -21560612 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1924 1387 254 139 61 chr1 175634820 175635280 -21560152 - Lx7 LINE L1 -322 7374 6857 1 1924 835 178 10 84 chr1 175635280 175635482 -21559950 + RMER17C LTR ERVK 1 187 -223 1 1924 957 42 0 0 chr1 175635483 175635601 -21559831 + (TTC)n Simple_repeat Simple_repeat 3 120 0 1 1924 234 150 0 0 chr1 175635863 175635903 -21559529 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 1 1925 237 132 0 0 chr1 175637357 175637395 -21558037 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1925 402 203 0 0 chr1 175637420 175637550 -21557882 + (TA)n Simple_repeat Simple_repeat 1 130 0 1 1925 811 284 52 6 chr1 175637682 175638008 -21557424 + L1_Rod LINE L1 2370 2710 -3137 1 1925 360 119 0 0 chr1 175638021 175638080 -21557352 + (CCA)n Simple_repeat Simple_repeat 1 59 0 1 1925 291 237 20 20 chr1 175638089 175638188 -21557244 + L1_Rod LINE L1 2727 2825 -3022 1 1925 369 0 0 0 chr1 175638313 175638354 -21557078 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1925 21 0 0 0 chr1 175638595 175638616 -21556816 + AT_rich Low_complexity Low_complexity 1 21 0 1 1925 1434 209 38 29 chr1 175638959 175639358 -21556074 + L1MA8 LINE L1 5430 5895 -396 1 1925 268 265 0 0 chr1 175639571 175639639 -21555793 + L1MA8 LINE L1 6306 6373 -1271 1 1925 219 397 0 0 chr1 175639844 175639922 -21555510 - ID4_ SINE ID -4 79 2 1 1925 2115 113 15 30 chr1 175640678 175641006 -21554426 - ORR1A2 LTR MaLR 0 327 5 1 1925 910 187 105 17 chr1 175641061 175641300 -21554132 - RMER6C LTR ERVK 0 690 431 1 1925 383 131 0 0 chr1 175641311 175641372 -21554060 - RMER6C LTR ERVK -400 61 1 1 1925 353 330 159 38 chr1 175641411 175641757 -21553675 - L1MCc LINE L1 -5948 475 88 1 1925 1149 189 83 0 chr1 175641774 175642039 -21553393 + Lx9 LINE L1 7350 7636 -8 1 1925 797 138 12 0 chr1 175642095 175642262 -21553170 + (GGGAGA)n Simple_repeat Simple_repeat 2 170 0 1 1925 318 246 6 16 chr1 175642271 175642431 -21553001 + GA-rich Low_complexity Low_complexity 1 158 0 1 1925 1474 11 0 16 chr1 175642431 175642613 -21552819 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1925 318 246 6 16 chr1 175642613 175642634 -21552798 + polypurine Low_complexity Low_complexity 159 179 0 1 1925 216 184 0 0 chr1 175642635 175642684 -21552748 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1925 5444 92 0 0 chr1 175643400 175644130 -21551302 - L1_Mus1 LINE L1 0 6567 5838 1 1925 974 89 7 0 chr1 175644130 175644276 -21551156 + L1_Mur2 LINE L1 4015 4161 -1716 1 1925 246 32 0 0 chr1 175644525 175644556 -21550876 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1925 749 141 19 78 chr1 175644565 175644719 -21550713 + ORR1B2 LTR MaLR 6 150 -217 1 1925 774 0 0 0 chr1 175644720 175644806 -21550626 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1925 386 278 19 0 chr1 175645000 175645108 -21550324 + PB1D9 SINE Alu 2 111 -9 1 1925 33 25 0 0 chr1 175645217 175645257 -21550175 + AT_rich Low_complexity Low_complexity 1 40 0 1 1925 201 261 22 0 chr1 175645974 175646020 -21549412 + MIR SINE MIR 26 72 -190 1 1925 26810 109 13 10 chr1 175646319 175648761 -21546671 - L1Md_F LINE L1 -263 5620 3173 1 1925 410 0 20 0 chr1 175648761 175648811 -21546621 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1925 26810 122 11 29 chr1 175648811 175651304 -21544128 - L1Md_F LINE L1 -2711 3172 725 1 1925 326 280 15 8 chr1 175651312 175651445 -21543987 - L1Md_F LINE L1 -5813 803 670 1 1925 456 271 53 131 chr1 175651486 175651866 -21543566 - L1VL1 LINE L1 -6075 343 15 1 1925 1139 203 139 36 chr1 175651995 175652296 -21543136 + IAPEY3_LTR LTR ERVK 1 332 0 1 1925 181 229 55 88 chr1 175652641 175652732 -21542700 + L3 LINE CR1 808 895 -3594 1 1925 546 29 0 0 chr1 175652876 175652944 -21542488 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1925 483 33 0 0 chr1 175654339 175654400 -21541032 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1925 1090 131 21 42 chr1 175654424 175654615 -21540817 + BGLII_B LTR ERVK 255 441 0 1 1925 1368 99 0 5 chr1 175655478 175655670 -21539762 + B2_Mm2 SINE B2 1 191 -4 1 1925 453 221 182 36 chr1 175656201 175656426 -21539006 - Lx7 LINE L1 0 7696 7439 1 1925 435 285 0 0 chr1 175656456 175656628 -21538804 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1925 22 56 0 0 chr1 175660692 175660728 -21534704 + AT_rich Low_complexity Low_complexity 1 36 0 1 1925 437 200 0 0 chr1 175662819 175662899 -21532533 + ORR1C2 LTR MaLR 1 80 -304 1 1925 1335 268 9 0 chr1 175662900 175663225 -21532207 - Lx7 LINE L1 -725 6971 6644 1 1925 2850 93 31 9 chr1 175663245 175663690 -21531742 - RLTR44C LTR ERVK -31 471 17 1 1925 387 347 8 0 chr1 175667204 175667325 -21528107 - ORR1E LTR MaLR -232 127 6 1 1925 261 0 0 0 chr1 175667997 175668026 -21527406 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1925 333 347 56 20 chr1 175668031 175668228 -21527204 - Lx8 LINE L1 -1143 6330 6127 1 1925 362 347 25 30 chr1 175668458 175668610 -21526822 + Lx8 LINE L1 7184 7335 -138 1 1925 456 51 0 0 chr1 175668610 175668669 -21526763 + (CATA)n Simple_repeat Simple_repeat 4 62 0 1 1925 362 347 25 30 chr1 175668669 175668715 -21526717 + Lx8 LINE L1 7336 7381 -92 1 1925 247 331 23 6 chr1 175668876 175669052 -21526380 + L1MA4 LINE L1 5417 5595 -708 1 1925 256 281 12 0 chr1 175669209 175669291 -21526141 + L1MA4 LINE L1 5696 5778 -513 1 1925 213 340 93 19 chr1 175669460 175669568 -21525864 + RSINE1 SINE B4 25 140 -25 1 1925 325 288 62 48 chr1 175669618 175669826 -21525606 + L1MA4 LINE L1 5808 6018 -282 1 1925 592 217 26 0 chr1 175670042 175670157 -21525275 + B1_Mur1 SINE Alu 32 149 0 1 1925 1045 101 0 0 chr1 175670319 175670467 -21524965 - B1_Mus1 SINE Alu 0 148 1 1 1925 635 176 22 0 chr1 175670756 175670892 -21524540 + GA-rich Low_complexity Low_complexity 40 178 0 1 1925 717 209 16 16 chr1 175672755 175672945 -21522487 - Lx3A LINE L1 -3 6978 6789 1 1925 231 294 103 23 chr1 175672954 175673041 -21522391 - URR1A DNA MER1_type -127 99 6 1 1925 14056 175 31 20 chr1 175673352 175674504 -21520928 + L1VL4 LINE L1 512 1589 -2228 1 1925 265 24 48 0 chr1 175674504 175674546 -21520886 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1925 14056 124 19 8 chr1 175674546 175676473 -21518959 + L1VL4 LINE L1 1590 3535 -282 1 1925 571 229 0 0 chr1 175676473 175676595 -21518837 + L1M2 LINE L1 3655 3776 -2367 1 1925 246 280 27 0 chr1 175676868 175676943 -21518489 + MTEa LTR MaLR 301 377 -2 1 1925 300 27 0 0 chr1 175678125 175678162 -21517270 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1925 2357 169 2 16 chr1 175678225 175678669 -21516763 + BGLII_B LTR ERVK 1 438 -3 1 1925 933 131 0 33 chr1 175679078 175679228 -21516204 + B1_Mus1 SINE Alu 3 147 -1 1 1925 261 40 19 57 chr1 175679229 175679282 -21516150 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 1925 505 241 17 35 chr1 175679653 175679769 -21515663 + RSINE1 SINE B4 5 118 -47 1 1925 251 284 10 21 chr1 175680240 175680337 -21515095 - Lx6 LINE L1 0 7460 7365 1 1925 200 59 0 29 chr1 175680378 175680413 -21515019 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1925 26 0 0 0 chr1 175680441 175680467 -21514965 + AT_rich Low_complexity Low_complexity 1 26 0 1 1925 270 293 0 0 chr1 175680517 175680650 -21514782 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1925 1135 0 15 0 chr1 175681420 175681555 -21513877 + (GAA)n Simple_repeat Simple_repeat 2 138 0 1 1925 213 39 0 0 chr1 175682362 175682388 -21513044 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1925 216 0 0 0 chr1 175682409 175682433 -21512999 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 2 1925 22 35 0 0 chr1 175684206 175684235 -21511197 + AT_rich Low_complexity Low_complexity 1 29 0 2 1925 218 29 0 56 chr1 175684278 175684314 -21511118 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1925 186 71 0 0 chr1 175684369 175684397 -21511035 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2 1925 5737 91 12 5 chr1 175684400 175685198 -21510234 - L1Md_F2 LINE L1 -19 6563 5760 2 1925 23 0 0 0 chr1 175687087 175687110 -21508322 + AT_rich Low_complexity Low_complexity 1 23 0 2 1925 22 35 0 0 chr1 175687396 175687425 -21508007 + AT_rich Low_complexity Low_complexity 1 29 0 2 1925 259 190 0 17 chr1 175688045 175688104 -21507328 + A-rich Low_complexity Low_complexity 2 59 0 2 1925 2060 265 74 27 chr1 175688137 175688769 -21506663 - Lx7 LINE L1 -423 7273 6612 2 1925 267 0 70 0 chr1 175690920 175690963 -21504469 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1925 1063 88 0 0 chr1 175690963 175691099 -21504333 - B1_Mm SINE Alu -10 137 2 2 1925 836 95 0 221 chr1 175691352 175691542 -21503890 + B1_Mus1 SINE Alu 1 148 0 2 1925 297 262 12 0 chr1 175692404 175692484 -21502948 - ORR1E LTR MaLR -4 375 295 2 1925 374 342 17 0 chr1 175692621 175692741 -21502691 - ORR1E LTR MaLR -232 127 6 2 1925 642 283 64 87 chr1 175693324 175693668 -21501764 - Lx8 LINE L1 -1053 6420 6085 2 1925 474 361 24 19 chr1 175693793 175694005 -21501427 + Lx8 LINE L1 7119 7331 -142 2 1925 423 0 0 0 chr1 175694010 175694057 -21501375 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1925 26 30 0 0 chr1 175694245 175694278 -21501154 + AT_rich Low_complexity Low_complexity 1 33 0 2 1925 466 316 97 8 chr1 175694328 175694596 -21500836 + L1MA4 LINE L1 5487 5778 -513 2 1925 486 0 0 0 chr1 175694712 175694766 -21500666 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1925 1144 88 0 0 chr1 175694866 175695013 -21500419 - B1_Mus2 SINE Alu 0 147 1 2 1925 373 325 48 40 chr1 175695111 175695367 -21500065 + L1MA4 LINE L1 5789 6047 -253 2 1925 596 233 17 0 chr1 175695555 175695671 -21499761 + B1_Mur1 SINE Alu 32 149 0 2 1925 299 320 40 10 chr1 175696103 175696204 -21499228 + B1_Mur2 SINE Alu 42 145 -4 2 1925 4337 98 7 107 chr1 175697591 175698412 -21497020 + RMER17A LTR ERVK 13 751 0 2 1925 2937 160 0 15 chr1 175698802 175699323 -21496109 - Lx3A LINE L1 -4 6977 6465 2 1925 248 214 0 35 chr1 175699323 175699381 -21496051 - RLTR12B LTR ERVK -430 98 43 2 1925 2710 274 42 91 chr1 175699402 175700806 -21494626 - L1_Mur3 LINE L1 -3054 2823 1517 2 1925 231 36 0 0 chr1 175700806 175700834 -21494598 + (TTC)n Simple_repeat Simple_repeat 3 30 0 2 1925 2710 293 60 25 chr1 175700834 175701429 -21494003 - L1_Mur3 LINE L1 -4362 1518 900 2 1925 942 223 35 0 chr1 175701555 175701752 -21493680 - URR1B DNA MER1_type 0 225 22 2 1925 261 188 0 15 chr1 175702174 175702239 -21493193 + GA-rich Low_complexity Low_complexity 2 65 0 2 1925 452 95 0 26 chr1 175702240 175702249 -21493183 + (GAAAA)n Simple_repeat Simple_repeat 4 12 0 2 1925 1364 50 0 11 chr1 175702249 175702431 -21493001 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1925 452 95 0 26 chr1 175702431 175702497 -21492935 + (GAAAA)n Simple_repeat Simple_repeat 3 67 0 2 1925 365 225 11 11 chr1 175703051 175703141 -21492291 - Lx8 LINE L1 -610 6863 6774 2 1925 245 314 11 11 chr1 175703185 175703272 -21492160 - Lx9 LINE L1 -791 6853 6767 2 1925 1315 284 76 104 chr1 175703442 175704031 -21491401 + RMER15 LTR ERVL 1 573 -2 2 1925 501 163 0 0 chr1 175704182 175704274 -21491158 + (TCTG)n Simple_repeat Simple_repeat 4 95 0 2 1925 395 301 44 29 chr1 175705523 175705660 -21489772 + MTE2b LTR MaLR 1 139 -240 2 1925 336 155 0 0 chr1 175705678 175705749 -21489683 + GA-rich Low_complexity Low_complexity 2 72 0 2 1925 298 279 211 0 chr1 175705750 175705923 -21489509 + MTE2b LTR MaLR 168 377 -2 2 1925 240 283 16 110 chr1 175706068 175706195 -21489237 - MLT1B LTR MaLR -251 139 25 2 1925 522 0 0 0 chr1 175707052 175707110 -21488322 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1925 1921 170 94 31 chr1 175707171 175707584 -21487848 + BGLII_B LTR ERVK 1 439 -2 2 1925 596 234 16 31 chr1 175708368 175708496 -21486936 + RSINE1 SINE B4 5 130 -35 2 1925 223 265 58 14 chr1 175708611 175708680 -21486752 - B4 SINE B4 -218 74 3 2 1925 393 203 208 41 chr1 175708983 175709204 -21486228 - Lx7 LINE L1 0 7696 7439 2 1925 509 250 6 0 chr1 175709205 175709377 -21486055 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1925 3935 131 8 7 chr1 175709697 175710306 -21485126 + L1_Mus3 LINE L1 6026 6635 -3 2 1925 291 233 0 0 chr1 175715609 175715669 -21479763 + ORR1B2 LTR MaLR 1 60 -324 2 1925 1773 171 3 63 chr1 175715859 175716190 -21479242 - RLTR10E LTR ERVK 0 311 1 2 1925 4971 170 3 2 chr1 175716268 175717185 -21478247 - MMERVK10C-int LTR ERVK -261 7419 6475 2 1925 781 195 13 31 chr1 175717184 175717411 -21478021 - MMERVK10C-int LTR ERVK -6654 927 705 2 1925 38178 42 1 3 chr1 175717415 175723758 -21471674 - L1Md_T LINE L1 0 6585 159 2 1925 2483 167 9 7 chr1 175723758 175724199 -21471233 - MMERVK10C-int LTR ERVK -6865 716 275 2 1925 372 209 33 0 chr1 175724197 175724288 -21471144 - MMERVK10C-int LTR ERVK -7487 94 1 2 1925 2059 142 3 6 chr1 175724288 175724600 -21470832 - RLTR10E LTR ERVK 0 311 1 2 1925 830 173 7 0 chr1 175725809 175725948 -21469484 - B1_Mus1 SINE Alu -5 143 4 2 1925 1062 98 85 0 chr1 175726013 175726177 -21469255 + B2_Mm2 SINE B2 2 179 -16 2 1925 1614 177 54 65 chr1 175726186 175726537 -21468895 + ORR1B2 LTR MaLR 19 365 -2 2 1925 297 0 0 0 chr1 175726799 175726832 -21468600 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1925 208 222 0 31 chr1 175728410 175728475 -21466957 + A-rich Low_complexity Low_complexity 3 65 0 2 1925 198 0 0 0 chr1 175729011 175729033 -21466399 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 2 1925 1142 75 7 0 chr1 175729045 175729192 -21466240 - B1_Mus1 SINE Alu 0 148 1 2 1925 29 28 0 0 chr1 175729288 175729324 -21466108 + AT_rich Low_complexity Low_complexity 1 36 0 2 1925 236 268 110 31 chr1 175729533 175729660 -21465772 + Lx8 LINE L1 6049 6185 -1288 2 1925 231 229 0 0 chr1 175729662 175729723 -21465709 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1925 27 0 0 0 chr1 175730450 175730477 -21464955 + AT_rich Low_complexity Low_complexity 1 27 0 2 1925 276 348 11 56 chr1 175730671 175730957 -21464475 + Lx8 LINE L1 6990 7262 -211 2 1925 22 35 0 0 chr1 175731961 175731990 -21463442 + AT_rich Low_complexity Low_complexity 1 29 0 2 1925 525 44 0 0 chr1 175732980 175733048 -21462384 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1925 229 231 96 0 chr1 175733245 175733297 -21462135 + RLTR19 LTR ERVK 1 57 -442 2 1925 914 92 13 19 chr1 175733332 175733488 -21461944 + L1_Mus3 LINE L1 6484 6638 0 2 1925 599 228 129 39 chr1 175733592 175733747 -21461685 + RLTR19 LTR ERVK 331 499 0 2 1925 351 263 40 0 chr1 175734320 175734472 -21460960 - L1M2 LINE L1 -1616 4527 4370 2 1925 977 74 0 26 chr1 175734477 175734629 -21460803 - Lx2 LINE L1 -1 6581 6434 2 1925 3581 104 26 17 chr1 175734631 175735209 -21460223 - Lx LINE L1 -12 6642 6060 2 1925 3966 145 19 1 chr1 175735203 175736215 -21459217 - Lx2 LINE L1 -830 6167 5143 2 1925 299 191 79 0 chr1 175736216 175736305 -21459127 - L1_Mur3 LINE L1 -2009 3871 3776 2 1925 576 0 0 0 chr1 175736352 175736416 -21459016 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1925 2644 185 24 10 chr1 175736431 175737049 -21458383 - L1_Mur3 LINE L1 -2097 3783 3157 2 1925 21 0 0 0 chr1 175737071 175737092 -21458340 + AT_rich Low_complexity Low_complexity 1 21 0 2 1925 33 43 0 0 chr1 175737172 175737219 -21458213 + AT_rich Low_complexity Low_complexity 1 47 0 2 1925 991 178 38 0 chr1 175737540 175737725 -21457707 + Lx5 LINE L1 6257 6448 -602 2 1925 1005 241 20 17 chr1 175737770 175738069 -21457363 + Lx7 LINE L1 5655 5954 -1742 2 1925 409 301 0 11 chr1 175738093 175738187 -21457245 + B3A SINE B2 33 125 -73 2 1925 357 75 0 0 chr1 175738211 175738264 -21457168 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 1925 6531 70 21 3 chr1 175738303 175739206 -21456226 + L1_Mus2 LINE L1 5648 6566 0 2 1925 238 254 14 0 chr1 175739215 175739286 -21456146 - L1_Rod LINE L1 -3347 2500 2429 2 1925 331 221 13 13 chr1 175739316 175739394 -21456038 + Lx8 LINE L1 6386 6463 -1010 2 1925 3354 182 98 55 chr1 175739417 175740235 -21455197 - Lx5 LINE L1 -3 7047 6195 2 1925 2591 246 64 3 chr1 175740240 175740960 -21454472 - Lx4B LINE L1 -329 6729 5966 2 1925 2465 186 57 35 chr1 175740962 175741562 -21453870 - Lx4B LINE L1 -47 5830 5218 2 1925 2377 182 104 26 chr1 175741562 175742102 -21453330 - RLTR31A_Mm LTR ERVK 0 584 3 2 1925 580 188 0 15 chr1 175742106 175742241 -21453191 - MYSERV16_I-int LTR ERVK -2 2840 2708 2 1925 31054 86 6 6 chr1 175742275 175747441 -21447991 + L1Md_F2 LINE L1 446 5585 -298 2 1925 7910 51 0 2 chr1 175747442 175748426 -21447006 + L1Md_F2 LINE L1 5587 6568 -14 2 1925 966 194 112 3 chr1 175748443 175748728 -21446704 - MYSERV16_I-int LTR ERVK -181 2145 1830 2 1925 6181 171 23 6 chr1 175748737 175750001 -21445431 - L1_Mur2 LINE L1 -669 5208 3923 2 1925 479 204 17 17 chr1 175750438 175750553 -21444879 - RLTR11A LTR ERVK 0 528 414 2 1925 1140 223 50 3 chr1 175750553 175750890 -21444542 - MYSERV16_I-int LTR ERVK -663 1663 1311 2 1925 2995 93 119 4 chr1 175750896 175751359 -21444073 - L1_Mus4 LINE L1 0 6636 6121 2 1925 453 116 0 0 chr1 175751365 175751434 -21443998 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 2 1925 998 122 0 7 chr1 175751434 175751582 -21443850 - B1_Mus1 SINE Alu -1 147 1 2 1925 11616 58 7 8 chr1 175751582 175753106 -21442326 + RLTR22_Mus LTR ERVK 287 1808 0 2 1925 277 326 41 110 chr1 175753496 175753641 -21441791 - B3A SINE B2 -1 197 63 2 1925 234 200 16 32 chr1 175754204 175754266 -21441166 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 2 1925 21 0 0 0 chr1 175755681 175755702 -21439730 + AT_rich Low_complexity Low_complexity 1 21 0 2 1925 542 278 83 44 chr1 175756120 175756372 -21439060 - Lx8 LINE L1 -579 6894 6633 2 1925 2620 82 10 16 chr1 175758740 175759126 -21436306 - L1_Mus3 LINE L1 -12 6626 6243 2 1925 743 58 37 43 chr1 175759311 175759472 -21435960 + (TCTCTG)n Simple_repeat Simple_repeat 3 162 0 2 1925 420 20 0 0 chr1 175760965 175761014 -21434418 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 2 1925 429 20 0 0 chr1 175762672 175762722 -21432710 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1925 303 28 0 0 chr1 175762722 175762757 -21432675 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 240 33618 48 1 5 chr1 175763072 175768560 -21426872 + L1Md_T LINE L1 30 5589 -297 2 1926 8534 31 0 0 chr1 175768560 175769556 -21425876 + L1Md_T LINE L1 5590 6585 0 2 1926 547 264 44 0 chr1 175770271 175770430 -21425002 - Lx7 LINE L1 -604 7092 6927 2 1926 21 0 0 0 chr1 175771533 175771554 -21423878 + AT_rich Low_complexity Low_complexity 1 21 0 3 1926 235 88 0 0 chr1 175771928 175771962 -21423470 - Lx5 LINE L1 -1261 5789 5756 3 1926 8726 87 21 16 chr1 175771962 175773195 -21422237 + Lx3_Mus LINE L1 5771 7009 0 3 1926 345 236 37 28 chr1 175773237 175773346 -21422086 - L1_Mur3 LINE L1 -4511 1369 1260 3 1926 1243 317 42 35 chr1 175773581 175774299 -21421133 + Lx9 LINE L1 6612 7334 -310 3 1926 593 58 12 0 chr1 175774394 175774480 -21420952 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1926 2380 133 54 26 chr1 175774875 175775300 -21420132 + RLTR9B LTR ERVK 1 437 0 3 1926 364 164 0 0 chr1 175776968 175777029 -21418403 + B1F1 SINE Alu 89 149 0 3 1926 187 79 53 0 chr1 175777030 175777068 -21418364 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1926 195 100 0 0 chr1 175777194 175777224 -21418208 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 1926 825 221 47 0 chr1 175777263 175777498 -21417934 - Lx5 LINE L1 -351 5529 5284 3 1926 5785 141 45 51 chr1 175777604 175778618 -21416814 - Lx LINE L1 0 6654 5640 3 1926 1243 111 11 11 chr1 175778618 175778809 -21416623 - B2_Mm2 SINE B2 -3 192 2 3 1926 5785 140 48 82 chr1 175778809 175779055 -21416377 - Lx LINE L1 -240 5643 5379 3 1926 1169 82 6 0 chr1 175779802 175779960 -21415472 + B2_Mm2 SINE B2 3 161 -34 3 1926 270 56 0 0 chr1 175779960 175779996 -21415436 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1926 825 229 115 62 chr1 175780990 175781250 -21414182 - Lx8 LINE L1 -610 6863 6590 3 1926 242 274 22 56 chr1 175781379 175781468 -21413964 + RMER15 LTR ERVL 1 86 -489 3 1926 1303 287 124 26 chr1 175781487 175781985 -21413447 + RMER15 LTR ERVL 27 573 -2 3 1926 531 0 0 0 chr1 175782049 175782108 -21413324 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1926 264 248 36 62 chr1 175782108 175782177 -21413255 - RMER12 LTR ERVK -481 841 769 3 1926 753 12 0 0 chr1 175782177 175782263 -21413169 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 3 1926 264 248 36 62 chr1 175782263 175782305 -21413127 - RMER12 LTR ERVK -554 768 733 3 1926 677 181 0 0 chr1 175782305 175782432 -21413000 + L1Md_F LINE L1 24 150 -6369 3 1926 5231 77 19 8 chr1 175782433 175783168 -21412264 + RLTR22_Mus LTR ERVK 1062 1804 -4 3 1926 340 374 58 47 chr1 175783235 175783355 -21412077 + MER45B DNA Tip100 11 123 -917 3 1926 558 0 0 0 chr1 175783355 175783417 -21412015 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1926 340 374 58 47 chr1 175783417 175783487 -21411945 + MER45B DNA Tip100 124 203 -837 3 1926 839 280 100 6 chr1 175783676 175784017 -21411415 + MER45B DNA Tip100 658 1030 -10 3 1926 2284 48 10 3 chr1 175784121 175784417 -21411015 - L1VL1 LINE L1 -3509 2374 2077 3 1926 8294 33 0 0 chr1 175784412 175785627 -21409805 - L1Md_T LINE L1 -2 6580 5366 3 1926 4783 28 2 0 chr1 175785626 175786192 -21409240 + L1Md_T LINE L1 4809 5375 -508 3 1926 6270 76 0 4 chr1 175786185 175787162 -21408270 - L1VL1 LINE L1 -3791 2092 1120 3 1926 194 79 44 73 chr1 175787982 175788050 -21407382 + A-rich Low_complexity Low_complexity 6 71 0 3 1926 1312 113 0 15 chr1 175788052 175788249 -21407183 + B2_Mm2 SINE B2 2 195 0 3 1926 34 24 0 0 chr1 175789441 175789482 -21405950 + AT_rich Low_complexity Low_complexity 1 41 0 3 1926 477 0 0 0 chr1 175789795 175789848 -21405584 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1926 414 59 0 29 chr1 175792103 175792173 -21403259 - L1Md_F2 LINE L1 -2 6580 6513 3 1926 1628 269 8 0 chr1 175794345 175794717 -21400715 - Lx7 LINE L1 -710 6986 6612 3 1926 5020 156 40 30 chr1 175797088 175799152 -21396280 + MMETn-int LTR ERVK 2356 4085 -3321 3 1926 3800 43 12 22 chr1 175799166 175799667 -21395765 + LTRIS2 LTR ERV1 69 564 0 3 1926 4659 111 10 2 chr1 175799667 175800292 -21395140 + MMETn-int LTR ERVK 6544 7173 -233 3 1926 361 248 321 45 chr1 175800292 175800619 -21394813 + RLTR13B1 LTR ERVK 128 537 -365 3 1926 443 82 25 76 chr1 175800619 175800698 -21394734 + ETnERV2-int LTR ERVK 7329 7403 -3 3 1926 1075 170 30 138 chr1 175800700 175801061 -21394371 + RLTRETN_Mm LTR ERVK 1 322 0 3 1926 308 189 0 0 chr1 175801915 175801968 -21393464 + ORR1C1 LTR MaLR 1 53 -325 3 1926 940 136 0 0 chr1 175803365 175803505 -21391927 - B1_Mus1 SINE Alu -5 143 4 3 1926 1368 210 58 79 chr1 175803540 175803570 -21391862 + ORR1B2 LTR MaLR 1 30 -354 3 1926 1058 98 85 0 chr1 175803570 175803734 -21391698 + B2_Mm2 SINE B2 2 179 -16 3 1926 1619 179 48 63 chr1 175803734 175804094 -21391338 + ORR1B2 LTR MaLR 19 370 -14 3 1926 21 57 0 0 chr1 175805374 175805409 -21390023 + AT_rich Low_complexity Low_complexity 1 35 0 3 1926 229 157 19 19 chr1 175805993 175806045 -21389387 + A-rich Low_complexity Low_complexity 5 56 0 3 1926 195 162 0 0 chr1 175806577 175806614 -21388818 + CT-rich Low_complexity Low_complexity 4 40 0 3 1926 1113 88 0 0 chr1 175806614 175806761 -21388671 - B1_Mus1 SINE Alu 0 148 2 3 1926 23 33 0 0 chr1 175806864 175806894 -21388538 + AT_rich Low_complexity Low_complexity 1 30 0 3 1926 300 219 0 0 chr1 175807212 175807294 -21388138 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 1926 22 35 0 0 chr1 175809392 175809421 -21386011 + AT_rich Low_complexity Low_complexity 1 29 0 3 1926 237 33 0 0 chr1 175810413 175810443 -21384989 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1926 883 287 118 69 chr1 175810640 175810727 -21384705 + RLTR19 LTR ERVK 1 89 -410 3 1926 857 125 13 7 chr1 175810727 175810880 -21384552 + L1_Mus3 LINE L1 6484 6637 -1 3 1926 883 287 118 69 chr1 175810880 175811268 -21384164 + RLTR19 LTR ERVK 90 499 0 3 1926 369 247 51 13 chr1 175811869 175812025 -21383407 - L1M2 LINE L1 -1616 4527 4366 3 1926 928 95 0 26 chr1 175812026 175812178 -21383254 - L1Md_F2 LINE L1 -1 6581 6434 3 1926 860 122 49 43 chr1 175812180 175812343 -21383089 - Lx LINE L1 -12 6642 6479 3 1926 543 280 25 0 chr1 175812343 175812461 -21382971 + RSINE1 SINE B4 5 125 -40 3 1926 252 77 0 0 chr1 175813078 175813117 -21382315 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1926 378 263 11 11 chr1 175813272 175813449 -21381983 + (CATA)n Simple_repeat Simple_repeat 2 178 0 3 1926 3202 66 9 2 chr1 175816308 175816736 -21378696 + L1_Mus2 LINE L1 6136 6566 0 3 1926 528 258 75 60 chr1 175817956 175818376 -21377056 - L1_Mur3 LINE L1 -4446 1434 993 3 1926 1783 305 40 45 chr1 175818406 175819237 -21376195 + Lx9 LINE L1 6612 7438 -206 3 1926 253 217 33 0 chr1 175820529 175820589 -21374843 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1926 297 293 5 5 chr1 175820592 175820690 -21374742 - Lx8 LINE L1 -815 6658 6577 3 1926 1250 94 6 6 chr1 175821065 175821246 -21374186 + L1_Mus1 LINE L1 6387 6567 0 3 1926 2220 169 14 83 chr1 175821257 175821375 -21374057 - L1_Mur3 LINE L1 -362 5518 5408 3 1926 6173 119 10 7 chr1 175821375 175822335 -21373097 + Lx3_Mus LINE L1 6047 7009 0 3 1926 2220 169 14 83 chr1 175822335 175822721 -21372711 - L1_Mur3 LINE L1 -473 5407 5049 3 1926 219 239 0 0 chr1 175822722 175822789 -21372643 + T-rich Low_complexity Low_complexity 1 67 0 3 1926 8941 5 0 0 chr1 175822792 175824427 -21371005 - L1Md_A LINE L1 -1 6581 4947 3 1926 335 49 0 0 chr1 175824436 175824477 -21370955 - L1Md_A LINE L1 -6578 146 106 3 1926 1268 89 0 1 chr1 175824508 175824754 -21370678 + (TTC)n Simple_repeat Simple_repeat 1 245 0 3 1926 1620 0 0 0 chr1 175824754 175824934 -21370498 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 3 1926 1268 56 0 6 chr1 175824934 175825049 -21370383 + (TTC)n Simple_repeat Simple_repeat 3 117 0 3 1926 4869 126 5 4 chr1 175825411 175826170 -21369262 + Lx LINE L1 5891 6650 -4 3 1926 326 278 35 25 chr1 175826188 175826355 -21369077 + L1_Mur2 LINE L1 5032 5210 -667 3 1926 208 108 12 75 chr1 175827135 175827175 -21368257 + A-rich Low_complexity Low_complexity 3 41 0 3 1926 1212 124 0 35 chr1 175827175 175827376 -21368056 + B2_Mm2 SINE B2 2 195 0 3 1926 208 108 12 75 chr1 175827376 175827415 -21368017 + A-rich Low_complexity Low_complexity 42 77 0 3 1926 21 0 0 0 chr1 175828564 175828585 -21366847 + AT_rich Low_complexity Low_complexity 1 21 0 3 1926 1002 41 0 0 chr1 175828897 175829020 -21366412 + (TC)n Simple_repeat Simple_repeat 1 123 0 3 1926 366 90 0 29 chr1 175831264 175831333 -21364099 - L1Md_F2 LINE L1 -3 6579 6513 3 1926 22 35 0 0 chr1 175833411 175833440 -21361992 + AT_rich Low_complexity Low_complexity 1 29 0 3 1926 220 208 0 0 chr1 175834059 175834107 -21361325 + A-rich Low_complexity Low_complexity 2 49 0 3 1926 2082 261 77 32 chr1 175834140 175834773 -21360659 - Lx7 LINE L1 -423 7273 6612 3 1926 180 0 0 0 chr1 175836921 175836941 -21358491 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1926 252 0 0 0 chr1 175836941 175836969 -21358463 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1926 1040 103 0 0 chr1 175836969 175837105 -21358327 - B1_Mm SINE Alu -10 137 2 3 1926 856 89 0 198 chr1 175837358 175837540 -21357892 + B1_Mus1 SINE Alu 1 146 -2 3 1926 306 228 25 12 chr1 175838401 175838481 -21356951 - ORR1E LTR MaLR -4 375 295 3 1926 374 342 17 0 chr1 175838618 175838738 -21356694 - ORR1E LTR MaLR -232 127 6 3 1926 644 292 61 87 chr1 175839321 175839666 -21355766 - Lx8 LINE L1 -1053 6420 6085 3 1926 461 365 24 19 chr1 175839791 175840003 -21355429 + Lx8 LINE L1 7119 7331 -142 3 1926 387 0 0 0 chr1 175840008 175840051 -21355381 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3 1926 21 57 0 0 chr1 175840164 175840199 -21355233 + AT_rich Low_complexity Low_complexity 1 35 0 3 1926 26 30 0 0 chr1 175840239 175840272 -21355160 + AT_rich Low_complexity Low_complexity 1 33 0 3 1926 433 323 97 8 chr1 175840322 175840590 -21354842 + L1MA4 LINE L1 5487 5778 -513 3 1926 216 430 0 0 chr1 175840592 175840678 -21354754 + ID_B1 SINE B4 81 166 -58 3 1926 594 0 0 0 chr1 175840706 175840772 -21354660 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1926 1104 89 7 0 chr1 175840872 175841018 -21354414 - B1_Mus2 SINE Alu 0 147 1 3 1926 389 317 51 39 chr1 175841116 175841372 -21354060 + L1MA4 LINE L1 5789 6047 -253 3 1926 581 241 17 0 chr1 175841559 175841675 -21353757 + B1_Mur1 SINE Alu 32 149 0 3 1926 281 330 40 10 chr1 175842107 175842208 -21353224 + B1_Mur2 SINE Alu 42 145 -4 3 1926 4324 111 19 73 chr1 175843590 175844371 -21351061 + RMER17A LTR ERVK 13 751 0 3 1926 2980 154 0 17 chr1 175844760 175845282 -21350150 - Lx3A LINE L1 -4 6977 6465 3 1926 231 220 0 20 chr1 175845289 175845340 -21350092 - RLTR12B LTR ERVK -436 92 43 3 1926 2651 260 34 32 chr1 175845361 175846306 -21349126 - L1_Mur3 LINE L1 -3056 2824 1878 4 1926 210 191 0 0 chr1 175846309 175846351 -21349081 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1926 2261 256 43 32 chr1 175846416 175847382 -21348050 - L1_Mur3 LINE L1 -4005 1875 900 4 1926 869 264 33 0 chr1 175847508 175847720 -21347712 - URR1B DNA MER1_type 0 225 7 4 1926 180 167 0 0 chr1 175848143 175848191 -21347241 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 4 1926 672 138 0 0 chr1 175848199 175848315 -21347117 + (GAGAA)n Simple_repeat Simple_repeat 2 117 0 4 1926 313 225 11 53 chr1 175848891 175848985 -21346447 - Lx8 LINE L1 -610 6863 6774 4 1926 230 329 24 0 chr1 175849029 175849114 -21346318 - Lx9 LINE L1 -791 6853 6767 4 1926 1298 285 67 106 chr1 175849284 175849880 -21345552 + RMER15 LTR ERVL 1 573 -2 4 1926 1095 139 0 0 chr1 175850030 175850210 -21345222 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1926 293 324 108 0 chr1 175850287 175850426 -21345006 - MLT1A1 LTR MaLR 0 408 255 4 1926 472 323 127 17 chr1 175851469 175851631 -21343801 + MTE2b LTR MaLR 1 169 -210 4 1926 837 122 0 0 chr1 175851631 175851778 -21343654 + (GA)n Simple_repeat Simple_repeat 2 148 0 4 1926 472 283 276 20 chr1 175851778 175851934 -21343498 + MTE2b LTR MaLR 170 377 -2 4 1926 241 292 16 110 chr1 175852079 175852206 -21343226 - MLT1A1 LTR MaLR -251 139 25 4 1926 687 54 0 0 chr1 175853063 175853155 -21342277 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 1926 1850 175 97 32 chr1 175853212 175853624 -21341808 + BGLII_B LTR ERVK 1 439 -2 4 1926 472 230 19 39 chr1 175854407 175854511 -21340921 + RSINE1 SINE B4 5 106 -59 4 1926 417 208 208 41 chr1 175855014 175855235 -21340197 - Lx7 LINE L1 0 7696 7439 4 1926 521 253 6 0 chr1 175855256 175855434 -21339998 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1926 3884 121 11 10 chr1 175855723 175856332 -21339100 + L1_Mus3 LINE L1 6026 6635 -3 4 1926 328 200 0 0 chr1 175861695 175861755 -21333677 + ORR1C2 LTR MaLR 1 60 -324 4 1926 1947 139 3 63 chr1 175861945 175862276 -21333156 - RLTR10E LTR ERVK 0 311 1 4 1926 5120 145 3 72 chr1 175862366 175863267 -21332165 - MMERVK10C-int LTR ERVK -268 7313 6475 4 1926 3484 184 14 15 chr1 175863266 175863928 -21331504 - MMERVK10C-int LTR ERVK -6654 927 267 4 1926 374 141 51 13 chr1 175863930 175864009 -21331423 - MMERVK10C-int LTR ERVK -7499 82 1 4 1926 2168 123 3 3 chr1 175864009 175864320 -21331112 - RLTR10E LTR ERVK 0 311 1 4 1926 234 237 0 0 chr1 175865348 175865386 -21330046 - tRNA-Ala-GCY_ tRNA tRNA -8 67 30 4 1926 214 377 43 0 chr1 175865386 175865417 -21330015 - ID4_ SINE ID -10 73 2 4 1926 900 157 0 0 chr1 175865526 175865666 -21329766 - B1_Mus1 SINE Alu -5 143 4 4 1926 1055 98 85 0 chr1 175865731 175865895 -21329537 + B2_Mm2 SINE B2 2 179 -16 4 1926 1586 188 48 62 chr1 175865904 175866256 -21329176 + ORR1B2 LTR MaLR 19 365 -2 4 1926 21 57 0 0 chr1 175867540 175867575 -21327857 + AT_rich Low_complexity Low_complexity 1 35 0 4 1926 701 53 11 0 chr1 175868707 175868801 -21326631 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 4 1926 1057 82 0 0 chr1 175868801 175868936 -21326496 - B1_Mus1 SINE Alu -12 136 2 4 1926 23 33 0 0 chr1 175869039 175869069 -21326363 + AT_rich Low_complexity Low_complexity 1 30 0 4 1926 273 252 109 39 chr1 175869278 175869406 -21326026 + Lx8 LINE L1 6049 6185 -1288 4 1926 285 197 0 0 chr1 175869408 175869469 -21325963 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1926 441 0 0 0 chr1 175870188 175870237 -21325195 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1926 248 348 40 55 chr1 175870374 175870648 -21324784 + Lx7 LINE L1 6944 7213 -483 4 1926 22 35 0 0 chr1 175871696 175871725 -21323707 + AT_rich Low_complexity Low_complexity 1 29 0 4 1926 864 307 104 49 chr1 175872934 175873021 -21322411 + RLTR19 LTR ERVK 1 95 -404 4 1926 842 125 13 7 chr1 175873021 175873174 -21322258 + L1_Mus3 LINE L1 6484 6637 -1 4 1926 864 307 104 49 chr1 175873174 175873559 -21321873 + RLTR19 LTR ERVK 96 499 0 4 1926 364 264 39 6 chr1 175874158 175874337 -21321095 - L1M3 LINE L1 -1616 4524 4340 4 1926 961 74 0 14 chr1 175874339 175874477 -21320955 - L1Md_F2 LINE L1 -13 6569 6434 4 1926 6235 114 24 70 chr1 175874479 175876057 -21319375 - Lx LINE L1 -12 6642 5142 4 1926 372 176 77 0 chr1 175876055 175876146 -21319286 - L1_Mur3 LINE L1 -2007 3873 3776 4 1926 183 80 0 0 chr1 175876194 175876219 -21319213 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1926 2770 186 24 11 chr1 175876234 175876853 -21318579 - L1_Mur3 LINE L1 -2097 3783 3157 4 1926 21 0 0 0 chr1 175876875 175876896 -21318536 + AT_rich Low_complexity Low_complexity 1 21 0 4 1926 40 21 0 0 chr1 175876977 175877024 -21318408 + AT_rich Low_complexity Low_complexity 1 47 0 4 1926 230 218 24 49 chr1 175877103 175877185 -21318247 + MER119 DNA MER1_type 429 508 -75 4 1926 989 195 38 0 chr1 175877345 175877530 -21317902 + Lx5 LINE L1 6257 6448 -602 4 1926 1022 286 23 14 chr1 175877534 175877878 -21317554 + Lx7 LINE L1 5608 5954 -1742 4 1926 422 296 10 10 chr1 175877897 175877996 -21317436 + B3A SINE B2 27 125 -73 4 1926 225 0 0 0 chr1 175878020 175878045 -21317387 + (CATA)n Simple_repeat Simple_repeat 4 28 0 4 1926 6956 61 20 3 chr1 175878084 175878988 -21316444 + L1_Mus2 LINE L1 5648 6566 0 4 1926 267 244 15 0 chr1 175879004 175879087 -21316345 - L1_Mur3 LINE L1 -3354 2493 2390 4 1926 339 234 13 13 chr1 175879098 175879176 -21316256 + Lx8 LINE L1 6386 6463 -1010 4 1926 3927 178 109 5 chr1 175879199 175879972 -21315460 - Lx5 LINE L1 -3 7047 6195 4 1926 2783 228 96 3 chr1 175879977 175880676 -21314756 - Lx4B LINE L1 -329 6729 5966 4 1926 3006 181 14 34 chr1 175880678 175881303 -21314129 - Lx4B LINE L1 -47 5830 5218 4 1926 2539 191 87 9 chr1 175881303 175881843 -21313589 - RLTR31A_Mm LTR ERVK 0 584 3 4 1926 1456 240 46 37 chr1 175881846 175882301 -21313131 - RMER3D-int LTR ERVK -1 2841 2383 4 1926 6769 171 20 2 chr1 175882306 175883570 -21311862 - Lx4B LINE L1 -669 5208 3923 4 1926 523 182 18 18 chr1 175884010 175884122 -21311310 - RLTR11A LTR ERVK -3 525 414 4 1926 1481 220 37 53 chr1 175884122 175884468 -21310964 - MYSERV16_I-int LTR ERVK -663 1663 1315 4 1926 3588 96 6 4 chr1 175884468 175884983 -21310449 - L1_Mus4 LINE L1 0 6636 6121 4 1926 528 16 0 0 chr1 175884989 175885050 -21310382 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 4 1926 957 118 0 0 chr1 175885050 175885186 -21310246 - B1_Mus1 SINE Alu -12 136 1 4 1926 1481 220 37 53 chr1 175885186 175885263 -21310169 - MYSERV16_I-int LTR ERVK -1012 1314 1240 4 1926 377 131 0 0 chr1 175885263 175885324 -21310108 - RLTR11A LTR ERVK -94 434 374 4 1926 10521 58 30 2 chr1 175885717 175887146 -21308286 + RLTR22_Mus LTR ERVK 1 1469 -339 4 1926 12060 67 20 0 chr1 175887331 175888929 -21306503 + L1Md_F2 LINE L1 3957 5586 -297 4 1926 7550 54 21 0 chr1 175888930 175889889 -21305543 + L1Md_F2 LINE L1 5588 6566 -16 4 1926 21 0 0 0 chr1 175889896 175889917 -21305515 + AT_rich Low_complexity Low_complexity 1 21 0 4 1926 2268 112 8 14 chr1 175889917 175890271 -21305161 + RLTR22_Mus LTR ERVK 1453 1804 -4 4 1926 366 386 20 36 chr1 175890336 175890461 -21304971 + MER45B DNA Tip100 11 130 -910 4 1926 468 0 0 0 chr1 175890461 175890513 -21304919 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1926 366 386 20 36 chr1 175890513 175890583 -21304849 + MER45B DNA Tip100 131 202 -838 4 1926 883 287 94 0 chr1 175890772 175891113 -21304319 + MER45B DNA Tip100 658 1030 -10 4 1926 243 316 88 22 chr1 175891659 175891795 -21303637 - MLT1J1 LTR MaLR -297 147 3 4 1926 318 288 65 48 chr1 175891822 175891990 -21303442 - RLTR28B LTR ERVL -39 442 272 4 1926 182 219 16 0 chr1 175892189 175892253 -21303179 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 4 1926 22 35 0 0 chr1 175893675 175893704 -21301728 + AT_rich Low_complexity Low_complexity 1 29 0 4 1926 280 322 110 88 chr1 175894273 175894409 -21301023 + RSINE1 SINE B4 11 149 -16 4 1926 2858 113 40 5 chr1 175894559 175895003 -21300429 + Lx2A1 LINE L1 6543 7002 -6 4 1926 235 161 17 35 chr1 175895105 175895163 -21300269 + A-rich Low_complexity Low_complexity 3 59 0 4 240 33483 57 7 2 chr1 175895784 175900282 -21295150 + L1Md_F3 LINE L1 972 5589 -297 4 1927 7869 45 14 11 chr1 175900282 175901277 -21294155 + L1Md_F3 LINE L1 5590 6587 0 4 1927 243 146 0 0 chr1 175905517 175905572 -21289860 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1927 766 294 18 5 chr1 175906516 175906735 -21288697 - Lx7 LINE L1 -560 7136 6915 4 1927 25 83 0 0 chr1 175906801 175906861 -21288571 + AT_rich Low_complexity Low_complexity 1 60 0 4 1927 747 22 0 0 chr1 175907575 175907664 -21287768 + (GAAAA)n Simple_repeat Simple_repeat 2 90 0 4 1927 234 150 0 0 chr1 175908248 175908288 -21287144 - Lx LINE L1 -855 5799 5760 4 1927 8210 99 31 23 chr1 175908288 175909525 -21285907 + Lx3_Mus LINE L1 5763 7009 0 4 1927 377 246 51 71 chr1 175909568 175909784 -21285648 - L1_Mur3 LINE L1 -4511 1369 1153 4 1927 1634 313 45 35 chr1 175909951 175910745 -21284687 + Lx9 LINE L1 6637 7438 -206 4 1927 31 26 0 0 chr1 175910752 175910790 -21284642 + AT_rich Low_complexity Low_complexity 1 38 0 4 1927 22 56 0 0 chr1 175911023 175911059 -21284373 + AT_rich Low_complexity Low_complexity 1 36 0 4 1927 2423 138 38 9 chr1 175911191 175911616 -21283816 + RLTR9B LTR ERVK 1 437 0 4 1927 378 148 0 0 chr1 175913270 175913331 -21282101 + B1F1 SINE Alu 89 149 0 4 1927 187 79 53 0 chr1 175913332 175913370 -21282062 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1927 195 100 0 0 chr1 175913495 175913525 -21281907 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1927 986 222 29 0 chr1 175913564 175913803 -21281629 - L1_Mur3 LINE L1 -351 5529 5284 4 1927 229 98 49 0 chr1 175913852 175913893 -21281539 - Lx LINE L1 0 7058 7016 4 1927 5574 146 47 51 chr1 175913908 175914920 -21280512 - Lx LINE L1 0 6654 5638 4 1927 1209 118 11 11 chr1 175914920 175915109 -21280323 - B2_Mm2 SINE B2 -5 190 2 4 1927 5574 136 49 84 chr1 175915109 175915355 -21280077 - Lx LINE L1 -246 5637 5379 4 1927 1120 110 5 60 chr1 175916102 175916260 -21279172 + B2_Mm2 SINE B2 3 161 -34 4 1927 369 0 0 0 chr1 175916260 175916301 -21279131 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1927 1120 110 5 60 chr1 175916301 175916326 -21279106 + B2_Mm2 SINE B2 162 176 -19 4 1927 809 234 115 62 chr1 175917281 175917541 -21277891 - Lx8 LINE L1 -610 6863 6590 4 1927 264 262 22 56 chr1 175917671 175917760 -21277672 + RMER15 LTR ERVL 1 86 -489 4 1927 1411 278 125 24 chr1 175917779 175918276 -21277156 + RMER15 LTR ERVL 27 573 -2 4 1927 32470 81 1 19 chr1 175918369 175923544 -21271888 + L1Md_F2 LINE L1 507 5585 -298 4 1927 7965 53 2 0 chr1 175923545 175924527 -21270905 + L1Md_F2 LINE L1 5587 6570 -12 4 1927 303 270 60 0 chr1 175924576 175924676 -21270756 - MLT1A1 LTR MaLR 0 408 303 4 1927 4252 195 26 39 chr1 175925217 175926123 -21269309 - RMER13B LTR ERVK -13 895 1 4 1927 464 341 98 21 chr1 175926702 175926862 -21268570 + MTE2b LTR MaLR 11 181 -198 4 1927 378 0 0 0 chr1 175926862 175926904 -21268528 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1927 464 274 239 9 chr1 175926904 175927060 -21268372 + MTE2b LTR MaLR 182 376 -3 4 1927 192 158 0 0 chr1 175928326 175928364 -21267068 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1927 2467 150 11 22 chr1 175928432 175928876 -21266556 + BGLII_B LTR ERVK 1 439 -2 5 1927 543 280 25 0 chr1 175929661 175929779 -21265653 + RSINE1 SINE B4 5 125 -40 5 1927 274 74 18 18 chr1 175930383 175930438 -21264994 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1927 402 263 11 11 chr1 175930593 175930770 -21264662 + (CATA)n Simple_repeat Simple_repeat 2 178 0 5 1927 3163 66 12 2 chr1 175933630 175934057 -21261375 + L1_Mus2 LINE L1 6136 6566 0 5 1927 522 258 75 63 chr1 175935276 175935697 -21259735 - L1_Mur3 LINE L1 -4446 1434 993 5 1927 1768 307 39 45 chr1 175935727 175936559 -21258873 + Lx9 LINE L1 6612 7438 -206 5 1927 253 217 33 0 chr1 175937851 175937911 -21257521 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1927 297 293 5 5 chr1 175937914 175938012 -21257420 - Lx8 LINE L1 -815 6658 6577 5 1927 1247 94 6 6 chr1 175938387 175938568 -21256864 + L1_Mus1 LINE L1 6387 6567 0 5 1927 2240 166 14 83 chr1 175938580 175938698 -21256734 - L1_Mur3 LINE L1 -362 5518 5408 5 1927 6135 121 10 7 chr1 175938698 175939658 -21255774 + Lx3_Mus LINE L1 6047 7009 0 5 1927 2240 166 14 83 chr1 175939658 175940044 -21255388 - L1_Mur3 LINE L1 -473 5407 5049 5 1927 419 164 10 0 chr1 175940046 175940150 -21255282 + CT-rich Low_complexity Low_complexity 1 105 0 5 1927 1149 90 0 19 chr1 175940150 175940471 -21254961 + (TTC)n Simple_repeat Simple_repeat 1 314 0 5 1927 1581 6 0 0 chr1 175940471 175940649 -21254783 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1927 942 106 0 43 chr1 175940649 175940693 -21254739 + (TTC)n Simple_repeat Simple_repeat 1 44 0 5 1927 4820 126 7 4 chr1 175941056 175941814 -21253618 + Lx LINE L1 5891 6650 -4 5 1927 340 294 22 27 chr1 175941832 175941999 -21253433 + L1_Rod LINE L1 5032 5206 -674 5 1927 208 108 12 75 chr1 175942780 175942820 -21252612 + A-rich Low_complexity Low_complexity 3 41 0 5 1927 1235 118 0 35 chr1 175942820 175943021 -21252411 + B2_Mm2 SINE B2 2 195 0 5 1927 208 108 12 75 chr1 175943021 175943060 -21252372 + A-rich Low_complexity Low_complexity 42 77 0 5 1927 21 0 0 0 chr1 175944209 175944230 -21251202 + AT_rich Low_complexity Low_complexity 1 21 0 5 1927 726 12 0 0 chr1 175944542 175944625 -21250807 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1927 366 90 0 29 chr1 175946878 175946947 -21248485 - L1Md_F2 LINE L1 -3 6579 6513 5 1927 36155 37 2 7 chr1 175948041 175953363 -21242069 + L1Md_T LINE L1 294 5586 -297 5 1927 8426 33 0 1 chr1 175953363 175954360 -21241072 + L1Md_T LINE L1 5587 6582 0 5 1927 1576 266 11 0 chr1 175955464 175955832 -21239600 - Lx7 LINE L1 -710 6986 6615 5 1927 34 24 0 0 chr1 175958011 175958052 -21237380 + AT_rich Low_complexity Low_complexity 1 41 0 5 1927 556 306 35 22 chr1 175959230 175959582 -21235850 + L1MA4 LINE L1 5423 5778 -522 5 1927 181 0 69 0 chr1 175959692 175959721 -21235711 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1927 308 333 84 19 chr1 175959751 175959858 -21235574 + RSINE1 SINE B4 25 138 -27 5 1927 266 325 60 36 chr1 175959891 175960143 -21235289 + L1MA4 LINE L1 5789 6046 -254 5 1927 21 0 0 0 chr1 175960306 175960327 -21235105 + AT_rich Low_complexity Low_complexity 1 21 0 5 1927 464 270 17 34 chr1 175960333 175960452 -21234980 + B1F2 SINE Alu 33 149 0 5 1927 313 360 0 86 chr1 175960830 175960982 -21234450 + B1_Mur1 SINE Alu 5 143 -6 5 1927 4330 108 18 5 chr1 175962712 175963364 -21232068 - Lx3A LINE L1 -2 6979 6319 5 1927 612 264 45 11 chr1 175963891 175964067 -21231365 + L1MC1 LINE L1 6079 6260 -73 5 1927 573 76 0 0 chr1 175964111 175964190 -21231242 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1927 2075 35 19 4 chr1 175964938 175965198 -21230234 + L1Md_F3 LINE L1 6318 6581 -3 5 1927 644 93 10 0 chr1 175967563 175967660 -21227772 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 5 1927 350 140 8 34 chr1 175967675 175967741 -21227691 - B2_Mm2 SINE B2 -102 114 47 5 1927 1164 131 11 0 chr1 175967807 175967983 -21227449 - B2_Mm1t SINE B2 -14 179 2 5 1927 219 405 23 28 chr1 175968364 175968422 -21227010 - B3 SINE B2 0 216 2 5 1927 462 382 19 6 chr1 175968422 175968580 -21226852 - RSINE1 SINE B4 -3 162 3 5 1927 252 302 0 0 chr1 175968843 175968906 -21226526 - B4 SINE B4 -228 64 2 5 1927 215 316 101 10 chr1 175969288 175969387 -21226045 + MIR SINE MIR 103 210 -52 5 1927 180 0 0 0 chr1 175970198 175970218 -21225214 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1927 504 130 25 17 chr1 175970259 175970391 -21225041 + Lx5 LINE L1 6836 6990 -68 5 1927 371 21 21 0 chr1 175970412 175970460 -21224972 + (TAA)n Simple_repeat Simple_repeat 1 49 0 5 1927 216 0 0 0 chr1 175970460 175970484 -21224948 + (TTA)n Simple_repeat Simple_repeat 3 26 0 5 1927 1008 36 0 21 chr1 175973308 175973448 -21221984 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 5 1927 505 88 29 19 chr1 175974294 175974398 -21221034 + (TG)n Simple_repeat Simple_repeat 1 105 0 5 1927 374 314 0 8 chr1 175975073 175975192 -21220240 + MIR SINE MIR 44 161 -101 5 1927 952 305 4 4 chr1 175976806 175977076 -21218356 - Lx8 LINE L1 -225 7248 6979 5 1927 254 106 0 21 chr1 175978050 175978098 -21217334 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 5 1927 652 312 26 5 chr1 175978209 175978399 -21217033 + B3A SINE B2 2 195 -3 5 1927 477 90 0 0 chr1 175980147 175980214 -21215218 + (T)n Simple_repeat Simple_repeat 1 67 0 5 1927 522 0 0 0 chr1 175982934 175982992 -21212440 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 5 1927 228 253 25 25 chr1 175983746 175983827 -21211605 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1927 505 94 0 23 chr1 175983839 175983926 -21211506 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 1927 1554 53 0 10 chr1 175983983 175984191 -21211241 + BGLII LTR ERVK 1 206 -215 5 1927 351 310 8 17 chr1 175984757 175984875 -21210557 + MIR SINE MIR 44 160 -102 5 1927 21 0 0 0 chr1 175986337 175986358 -21209074 + AT_rich Low_complexity Low_complexity 1 21 0 5 1927 23 33 0 0 chr1 175986462 175986492 -21208940 + AT_rich Low_complexity Low_complexity 1 30 0 5 1927 330 143 39 0 chr1 175986592 175986669 -21208763 + CT-rich Low_complexity Low_complexity 6 85 0 5 1927 510 108 0 0 chr1 175987523 175987606 -21207826 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1927 556 332 19 14 chr1 175987668 175987876 -21207556 + MER58A DNA MER1_type 15 223 -1 5 1927 184 336 77 60 chr1 175988308 175988542 -21206890 + L3 LINE CR1 3553 3790 -699 5 1927 472 238 121 115 chr1 175988630 175988995 -21206437 - RLTR9A LTR ERVK 0 368 2 5 1927 281 257 36 62 chr1 175989564 175989676 -21205756 - ETnERV2-int LTR ERVK -1201 6205 6097 5 1927 11216 117 37 22 chr1 175989680 175991124 -21204308 - RMER16-int LTR ERVK -1226 4180 2715 5 1927 5010 36 16 2 chr1 175991124 175991732 -21203700 + L1Md_T LINE L1 5964 6580 -2 5 1927 11216 117 37 22 chr1 175991732 175992141 -21203291 - RMER16-int LTR ERVK -2692 2714 2299 5 1927 3082 118 121 16 chr1 175992181 175992743 -21202689 - RMER16-int LTR ERVK -3199 2207 1587 5 1927 698 271 88 9 chr1 175992854 175993070 -21202362 + Lx8 LINE L1 7056 7288 -185 5 1927 7037 162 51 5 chr1 175993204 175994513 -21200919 - L1_Mur2 LINE L1 -79 5798 4429 5 1927 4916 123 89 4 chr1 175994513 175995311 -21200121 + Lx LINE L1 5773 6639 -15 5 1927 936 123 0 0 chr1 175995311 175995457 -21199975 + (GAAA)n Simple_repeat Simple_repeat 4 149 0 5 1927 221 377 30 30 chr1 175996158 175996325 -21199107 + MIRb SINE MIR 89 255 -13 5 1927 275 264 28 0 chr1 175998268 175998340 -21197092 + CT-rich Low_complexity Low_complexity 3 76 0 5 1927 4668 223 181 32 chr1 176001379 176002957 -21192475 - RLTR22_Mur LTR ERVK -35 1813 1 1 1927 816 269 15 30 chr1 176002957 176003156 -21192276 + B3 SINE B2 16 211 -5 2 1927 21 0 0 0 chr1 176003172 176003193 -21192239 + AT_rich Low_complexity Low_complexity 1 21 0 3 1927 8384 25 2 0 chr1 176003193 176004580 -21190852 - L1Md_T LINE L1 0 6582 5192 4 1927 519 329 20 46 chr1 176004879 176005032 -21190400 + RSINE1 SINE B4 13 161 -4 5 1927 553 323 86 33 chr1 176005130 176005492 -21189940 - Lx8 LINE L1 -31 7442 7062 6 1927 1009 304 96 13 chr1 176005604 176006413 -21189019 - L1M2 LINE L1 -2263 3880 2931 7 1927 2042 126 14 40 chr1 176006429 176006800 -21188632 + RLTR31A_Mm LTR ERVK 1 361 -223 8 1927 511 298 104 42 chr1 176007188 176007514 -21187918 - L1M2 LINE L1 -3071 2809 2483 7 1927 968 248 240 34 chr1 176007514 176007952 -21187480 - RLTR11A LTR ERVK 0 528 1 9 1927 511 284 108 45 chr1 176007952 176008275 -21187157 - L1M2 LINE L1 -3640 2503 2144 7 1927 522 0 0 0 chr1 176008779 176008837 -21186595 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1927 351 373 25 0 chr1 176008853 176008971 -21186461 - RSINE1 SINE B4 -41 124 4 1 1927 761 282 15 19 chr1 176009361 176009567 -21185865 - B3 SINE B2 -4 212 8 1 1927 314 324 189 19 chr1 176009576 176009840 -21185592 - L1M4 LINE L1 -838 5308 5000 1 1927 24 0 0 0 chr1 176010127 176010151 -21185281 + AT_rich Low_complexity Low_complexity 1 24 0 1 1927 428 211 122 144 chr1 176010287 176010475 -21184957 + B3A SINE B2 15 198 0 1 1927 771 284 10 0 chr1 176010613 176010814 -21184618 + Lx9 LINE L1 6374 6576 -1068 1 1927 238 247 13 0 chr1 176010809 176010886 -21184546 + Lx9 LINE L1 7565 7642 -2 1 1927 387 60 0 0 chr1 176010889 176010939 -21184493 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1927 2972 169 26 73 chr1 176011059 176011717 -21183715 - L1_Mur2 LINE L1 -504 5373 4747 1 1927 1092 139 0 0 chr1 176011714 176011887 -21183545 + L1_Mm LINE L1 5325 5497 -386 1 1927 3644 186 80 10 chr1 176011884 176012834 -21182598 + Lx2 LINE L1 5938 6997 0 2 1927 211 362 42 21 chr1 176014968 176015064 -21180368 + MIR3 SINE MIR 75 172 -36 2 1927 511 315 56 51 chr1 176015414 176015628 -21179804 + B3 SINE B2 1 215 -1 2 1927 267 218 4 141 chr1 176015713 176015975 -21179457 + RMER17D LTR ERVK 244 469 -420 2 1927 549 323 23 70 chr1 176015976 176016276 -21179156 - B4A SINE B4 -2 290 5 2 1927 22 0 0 0 chr1 176016992 176017014 -21178418 + AT_rich Low_complexity Low_complexity 1 22 0 2 1927 510 17 0 0 chr1 176017072 176017131 -21178301 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1927 1785 219 47 8 chr1 176017306 176017670 -21177762 - Lx5 LINE L1 -3 7047 6670 2 1927 1377 162 0 0 chr1 176017672 176017894 -21177538 - Lx5 LINE L1 -527 6523 6302 2 1927 729 242 19 19 chr1 176017947 176018107 -21177325 - RSINE1 SINE B4 -2 163 4 2 1927 218 160 0 20 chr1 176020873 176020924 -21174508 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1927 385 320 184 21 chr1 176021235 176021421 -21174011 + B3A SINE B2 1 198 -18 3 1927 1344 331 45 54 chr1 176021536 176022289 -21173143 - Lx7 LINE L1 -2 7471 6716 3 1927 341 294 8 85 chr1 176022592 176022722 -21172710 + RSINE1 SINE B4 46 165 0 3 1927 183 289 135 0 chr1 176022775 176022827 -21172605 + MIRc SINE MIR 73 131 -137 3 1927 689 208 101 5 chr1 176023177 176023375 -21172057 - Lx9 LINE L1 -7 7637 7421 3 1927 1318 256 57 40 chr1 176023386 176024018 -21171414 + Lx6 LINE L1 5782 6473 -987 3 1927 3049 139 36 6 chr1 176024046 176024573 -21170859 + RLTR13D1 LTR ERVK 1 543 -359 3 1927 3548 103 52 9 chr1 176024546 176025102 -21170330 + RLTR13D1 LTR ERVK 227 806 0 3 1927 574 176 8 25 chr1 176025492 176025614 -21169818 - L1_Mur3 LINE L1 -1732 4148 4029 3 1927 390 116 29 0 chr1 176025617 176025686 -21169746 + RMER1C Other Other 1271 1341 -1 3 1927 354 138 0 0 chr1 176025888 176025946 -21169486 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1927 312 94 0 0 chr1 176026001 176026054 -21169378 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1927 362 252 31 16 chr1 176026162 176026291 -21169141 + Lx4B LINE L1 6928 7058 0 4 1927 209 119 24 0 chr1 176027702 176027744 -21167688 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1927 300 366 31 44 chr1 176028615 176028775 -21166657 + MER20 DNA MER1_type 61 218 -1 4 1928 2704 226 86 49 chr1 176030661 176031335 -21164097 - Lx5 LINE L1 -3 7047 6349 4 1928 1822 219 29 18 chr1 176031326 176031608 -21163824 - L1_Mur2 LINE L1 -250 5627 5343 4 1928 1501 162 4 8 chr1 176031608 176031875 -21163557 - Lx2 LINE L1 0 6997 6732 4 1928 1822 219 29 18 chr1 176031875 176032042 -21163390 - L1_Mur2 LINE L1 -535 5342 5174 4 1928 337 37 0 115 chr1 176033030 176033091 -21162341 - HAL1-3A_ME LINE L1 -830 2028 1975 4 1928 244 218 11 11 chr1 176033122 176033210 -21162222 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1928 251 191 0 14 chr1 176033413 176033482 -21161950 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1928 1116 117 33 6 chr1 176033482 176033516 -21161916 - B2_Mm2 SINE B2 -10 185 149 4 1928 223 85 21 21 chr1 176033516 176033564 -21161868 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1928 1116 117 33 6 chr1 176033564 176033709 -21161723 - B2_Mm2 SINE B2 -47 148 1 4 1928 198 150 0 0 chr1 176033710 176033750 -21161682 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1928 250 305 38 9 chr1 176034169 176034275 -21161157 + Lx9 LINE L1 6900 7008 -636 5 1928 276 102 0 0 chr1 176034501 176034550 -21160882 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 5 1928 567 185 0 0 chr1 176034555 176034706 -21160726 + GA-rich Low_complexity Low_complexity 2 152 0 5 1928 235 281 103 26 chr1 176034706 176034823 -21160609 + Lx9 LINE L1 7343 7468 -176 5 1928 246 276 13 0 chr1 176034834 176034910 -21160522 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1928 211 440 0 52 chr1 176034996 176035111 -21160321 + MIRb SINE MIR 31 139 -129 5 1928 574 252 9 0 chr1 176035653 176035768 -21159664 + B3A SINE B2 1 116 -82 5 1928 1056 335 68 38 chr1 176035985 176036089 -21159343 - Lx7 LINE L1 -11 7462 7351 5 1928 1270 67 11 0 chr1 176036089 176036267 -21159165 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 1928 1444 309 51 23 chr1 176036267 176036879 -21158553 - Lx7 LINE L1 -123 7350 6714 5 1928 243 361 8 78 chr1 176037171 176037300 -21158132 + RSINE1 SINE B4 46 165 0 6 1928 24 0 0 0 chr1 176037461 176037485 -21157947 + AT_rich Low_complexity Low_complexity 1 24 0 6 1928 614 198 150 0 chr1 176037762 176037949 -21157483 - Lx9 LINE L1 -9 7635 7421 6 1928 284 293 10 10 chr1 176037974 176038074 -21157358 + Lx9 LINE L1 6308 6407 -1237 6 1928 341 325 174 43 chr1 176039696 176040088 -21155344 - LTR82B Low_complexity ERVL -118 712 270 6 1928 283 256 33 11 chr1 176041473 176041564 -21153868 + Lx9 LINE L1 7349 7441 -203 6 1928 522 43 0 0 chr1 176041579 176041648 -21153784 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1928 5341 141 10 3 chr1 176041728 176042614 -21152818 - L1_Mur2 LINE L1 -315 5562 4671 6 1928 1394 210 21 18 chr1 176042611 176042941 -21152491 + Lx4B LINE L1 6724 7054 -4 6 1928 25 51 0 0 chr1 176043350 176043389 -21152043 + AT_rich Low_complexity Low_complexity 1 39 0 6 1928 24 77 0 0 chr1 176043724 176043776 -21151656 + AT_rich Low_complexity Low_complexity 1 52 0 6 1928 201 260 20 0 chr1 176044632 176044682 -21150750 - L2 LINE L2 -1513 1906 1856 7 1928 975 109 84 28 chr1 176045174 176045353 -21150079 - B2_Mm2 SINE B2 -5 190 2 7 1928 801 273 81 51 chr1 176045849 176046181 -21149251 + Lx8 LINE L1 6981 7322 -151 7 1928 317 325 0 0 chr1 176046303 176046383 -21149049 + RSINE1 SINE B4 54 133 -32 7 1928 2312 99 43 16 chr1 176048279 176048647 -21146785 + L1_Mus3 LINE L1 6257 6634 -4 7 1928 22 35 0 0 chr1 176051694 176051723 -21143709 + AT_rich Low_complexity Low_complexity 1 29 0 7 1928 268 336 29 7 chr1 176051889 176052027 -21143405 - Lx7 LINE L1 -349 7347 7207 7 1928 228 283 0 0 chr1 176052206 176052266 -21143166 + L1ME3B LINE L1 4547 4606 -1540 7 1928 1213 285 14 16 chr1 176052867 176053231 -21142201 + Lx6 LINE L1 7071 7433 -27 7 1928 341 315 54 43 chr1 176053390 176053576 -21141856 + L1ME3B LINE L1 5825 6012 -228 7 1928 267 228 29 19 chr1 176053940 176054043 -21141389 + (TA)n Simple_repeat Simple_repeat 2 105 0 7 1928 263 368 51 15 chr1 176054071 176054267 -21141165 - Lx8 LINE L1 -2 7471 7269 8 1928 4762 135 28 10 chr1 176055077 176055156 -21140276 - L1_Mur2 LINE L1 -179 5698 5615 8 1928 495 0 0 0 chr1 176055156 176055211 -21140221 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1928 4762 135 28 10 chr1 176055211 176055925 -21139507 - L1_Mur2 LINE L1 -263 5614 4891 8 1928 3032 195 48 31 chr1 176055921 176057180 -21138252 + Lx5 LINE L1 5691 7050 0 8 1928 555 56 0 0 chr1 176057309 176057380 -21138052 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 8 1928 195 42 0 0 chr1 176057456 176057480 -21137952 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 8 1928 602 203 112 8 chr1 176057691 176057825 -21137607 - B1_Mus1 SINE Alu 0 148 1 8 1928 957 253 59 4 chr1 176057972 176058226 -21137206 - Lx2B LINE L1 -4 6996 6729 8 1928 510 17 0 0 chr1 176058402 176058461 -21136971 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1928 453 36 0 0 chr1 176058597 176058652 -21136780 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1928 21 57 0 0 chr1 176059821 176059856 -21135576 + AT_rich Low_complexity Low_complexity 1 35 0 9 1928 753 332 115 6 chr1 176060153 176060501 -21134931 + Lx8 LINE L1 6994 7379 -94 9 1928 21 82 0 0 chr1 176060619 176060668 -21134764 + AT_rich Low_complexity Low_complexity 1 49 0 9 1928 387 316 119 56 chr1 176060959 176061210 -21134222 - MLT1H LTR MaLR -245 304 38 9 1928 24 0 0 0 chr1 176061228 176061252 -21134180 + AT_rich Low_complexity Low_complexity 1 24 0 9 1928 339 339 24 24 chr1 176062041 176062210 -21133222 - MER76-int LTR ERVL -2506 3683 3515 9 1928 325 366 68 6 chr1 176062283 176062445 -21132987 - MER76-int LTR ERVL -4305 1884 1713 9 1928 435 256 0 0 chr1 176062622 176062708 -21132724 + B1F SINE Alu 32 117 -32 9 1928 234 311 190 15 chr1 176063423 176063560 -21131872 - MER76 LTR ERVL -86 605 445 9 1928 522 286 127 27 chr1 176063749 176064080 -21131352 - L1MD3 LINE L1 -2159 5836 5473 9 1928 209 208 0 0 chr1 176064191 176064239 -21131193 + A-rich Low_complexity Low_complexity 1 48 0 9 1928 405 39 0 0 chr1 176064836 176064887 -21130545 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1928 852 244 137 9 chr1 176065233 176065452 -21129980 - MTEb LTR MaLR -131 248 2 1 1928 813 118 14 36 chr1 176066332 176066472 -21128960 - B1_Mus2 SINE Alu 0 147 11 1 1928 606 235 11 187 chr1 176066334 176066596 -21128836 - ID_B1 SINE B4 0 224 9 1 1928 22 0 0 0 chr1 176068365 176068387 -21127045 + AT_rich Low_complexity Low_complexity 1 22 0 1 1928 251 119 60 0 chr1 176068565 176068632 -21126800 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1928 45 0 0 0 chr1 176070083 176070128 -21125304 + AT_rich Low_complexity Low_complexity 1 45 0 1 1928 197 329 96 48 chr1 176070867 176071033 -21124399 - MIR SINE MIR -87 175 2 1 1928 381 291 108 28 chr1 176071777 176071938 -21123494 - B4A SINE B4 -63 161 1 1 1928 22 0 0 0 chr1 176072510 176072532 -21122900 + AT_rich Low_complexity Low_complexity 1 22 0 1 1928 218 147 67 37 chr1 176073704 176073732 -21121700 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 1 1928 528 30 0 0 chr1 176073732 176073798 -21121634 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1928 218 147 67 37 chr1 176073798 176073903 -21121529 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 1 1928 233 239 36 20 chr1 176073991 176074077 -21121355 - L1M2 LINE L1 -696 5607 5516 1 1928 217 0 29 29 chr1 176074077 176074111 -21121321 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1928 229 279 89 60 chr1 176074111 176074316 -21121116 - L1M2 LINE L1 -782 5515 5307 1 1928 220 53 53 0 chr1 176074318 176074356 -21121076 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1928 380 278 104 25 chr1 176074357 176074597 -21120835 - L1M2 LINE L1 -856 5287 5029 1 1928 5093 218 88 15 chr1 176074634 176075880 -21119552 - Lx9 LINE L1 -2 7642 6307 1 1928 240 322 9 42 chr1 176076143 176076263 -21119169 + ID4 SINE ID 8 124 -28 1 1928 817 268 21 0 chr1 176076345 176076539 -21118893 + Lx5 LINE L1 6834 7031 -19 1 1928 477 50 0 0 chr1 176076539 176076599 -21118833 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1 1928 1471 322 55 39 chr1 176076696 176077390 -21118042 + Lx8 LINE L1 6454 7158 -315 1 1928 689 309 70 16 chr1 176077717 176078089 -21117343 + L1M2 LINE L1 4610 5001 -1142 1 1928 215 31 0 30 chr1 176078114 176078147 -21117285 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1928 548 305 66 49 chr1 176078170 176078353 -21117079 + B3 SINE B2 3 188 -28 1 1928 504 32 0 0 chr1 176078673 176078735 -21116697 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1928 378 0 0 0 chr1 176079584 176079626 -21115806 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1928 268 0 95 0 chr1 176080034 176080076 -21115356 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1928 501 92 0 0 chr1 176080201 176080277 -21115155 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1928 320 306 134 5 chr1 176080959 176081146 -21114286 - MIR SINE MIR -49 213 3 1 1928 908 302 12 20 chr1 176081294 176081541 -21113891 - B4A SINE B4 0 292 48 1 1928 203 286 0 0 chr1 176084014 176084063 -21111369 + T-rich Low_complexity Low_complexity 4 52 0 1 1928 206 248 0 62 chr1 176084698 176084810 -21110622 + T-rich Low_complexity Low_complexity 3 107 0 1 1928 21 36 0 0 chr1 176085317 176085345 -21110087 + AT_rich Low_complexity Low_complexity 1 28 0 1 1928 216 0 0 0 chr1 176086686 176086710 -21108722 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1928 654 148 0 0 chr1 176086710 176086825 -21108607 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 1928 440 274 127 40 chr1 176087070 176087138 -21108294 - MLT1B LTR MaLR -123 267 183 1 1928 522 0 0 0 chr1 176087138 176087196 -21108236 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1928 440 274 127 40 chr1 176087196 176087355 -21108077 - MLT1B LTR MaLR -208 182 20 1 1928 793 168 47 7 chr1 176088226 176088376 -21107056 + Lx7 LINE L1 7541 7696 0 1 1928 317 354 139 0 chr1 176088532 176088690 -21106742 + MER5A DNA MER1_type 4 183 -6 1 1928 610 305 67 0 chr1 176090024 176090188 -21105244 - B4A SINE B4 -2 290 116 1 1928 792 181 0 45 chr1 176090509 176090665 -21104767 + B1_Mur1 SINE Alu 1 149 0 1 1928 2484 40 0 0 chr1 176090823 176091123 -21104309 - L1Md_T LINE L1 -1 6581 6282 1 1928 972 249 23 0 chr1 176092398 176092619 -21102813 - Lx5 LINE L1 -653 6397 6172 1 1928 1816 209 42 76 chr1 176092607 176092679 -21102753 + Lx5 LINE L1 6419 6476 -574 1 1928 1120 56 35 0 chr1 176092679 176092821 -21102611 - B1_Mm SINE Alu 0 147 1 1 1928 1816 209 42 76 chr1 176092821 176093219 -21102213 + Lx5 LINE L1 6477 6873 -177 1 1928 267 339 62 23 chr1 176093293 176093423 -21102009 - MIRb SINE MIR -107 161 27 1 1928 225 0 0 0 chr1 176093445 176093470 -21101962 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1928 949 41 0 47 chr1 176093470 176093598 -21101834 + B1_Mm SINE Alu 21 142 -5 1 1928 3697 54 0 27 chr1 176093751 176094230 -21101202 - L1Md_F2 LINE L1 -72 6510 6045 1 1928 371 290 108 57 chr1 176094961 176095005 -21100427 - Lx8 LINE L1 -1116 6357 6303 1 1928 1386 248 76 3 chr1 176095005 176095349 -21100083 - ORR1D2 LTR MaLR -1 369 1 1 1928 371 303 97 49 chr1 176095349 176095604 -21099828 - Lx8 LINE L1 -1171 6302 6037 1 1928 1330 116 121 29 chr1 176095712 176095952 -21099480 - Lx LINE L1 0 6654 6393 1 1928 558 80 0 0 chr1 176095948 176096023 -21099409 + Lx LINE L1 6265 6339 -315 1 1928 874 266 69 14 chr1 176096029 176096304 -21099128 - Lx8 LINE L1 -1555 5918 5629 1 1928 1189 303 31 24 chr1 176096321 176096734 -21098698 + Lx8 LINE L1 6830 7245 -228 1 1928 346 351 45 51 chr1 176096735 176096891 -21098541 - MLT1A LTR MaLR -43 331 177 1 1928 447 274 115 63 chr1 176096994 176097185 -21098247 - B3 SINE B2 -15 201 1 1 1928 231 61 0 0 chr1 176098167 176098200 -21097232 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1928 4631 39 3 2 chr1 176098236 176098801 -21096631 - L1Md_T LINE L1 0 6582 6017 1 1928 941 308 83 16 chr1 176098979 176099352 -21096080 - MT2A LTR ERVL 0 533 136 1 1928 251 200 0 0 chr1 176099360 176099405 -21096027 - B3A SINE B2 -147 51 7 1 1928 291 333 49 12 chr1 176101418 176101500 -21093932 + B1F SINE Alu 9 93 -56 1 1928 189 0 0 0 chr1 176102093 176102114 -21093318 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1928 466 172 103 8 chr1 176102174 176102291 -21093141 + L1M3 LINE L1 4996 5123 -1017 1 1928 464 122 0 0 chr1 176102308 176102390 -21093042 + Lx3A LINE L1 6897 6978 -3 1 1928 1407 46 0 0 chr1 176102404 176102579 -21092853 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 1 1928 209 57 0 28 chr1 176103277 176103313 -21092119 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 1928 23 0 0 0 chr1 176103607 176103630 -21091802 + AT_rich Low_complexity Low_complexity 1 23 0 1 1928 956 62 0 0 chr1 176103972 176104100 -21091332 - L1_Mus1 LINE L1 0 6567 6440 1 1928 248 77 26 0 chr1 176104100 176104139 -21091293 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1928 214 351 18 0 chr1 176106909 176106966 -21088466 + B4A SINE B4 85 142 -150 1 1928 227 355 26 0 chr1 176106919 176106995 -21088437 + PB1D10 SINE Alu 10 87 -30 1 1928 2127 158 52 0 chr1 176106999 176107366 -21088066 - ORR1B1 LTR MaLR -8 386 1 1 1928 1834 246 24 14 chr1 176108008 176108424 -21087008 - Lx5 LINE L1 -11 7039 6620 1 1928 23 0 0 0 chr1 176108459 176108482 -21086950 + AT_rich Low_complexity Low_complexity 1 23 0 1 1928 413 258 22 112 chr1 176108583 176108762 -21086670 - RSINE1 SINE B4 0 165 3 1 1928 1231 27 0 0 chr1 176109314 176109461 -21085971 + B1_Mus2 SINE Alu 1 147 0 1 1928 207 0 0 0 chr1 176109466 176109489 -21085943 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1928 23 0 0 0 chr1 176109805 176109828 -21085604 + AT_rich Low_complexity Low_complexity 1 23 0 1 1928 672 13 0 0 chr1 176110045 176110122 -21085310 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1928 218 136 23 0 chr1 176110273 176110317 -21085115 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1928 240 35 0 0 chr1 176112301 176112330 -21083102 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1928 229 311 54 85 chr1 176112688 176112818 -21082614 - ORR1E LTR MaLR -137 222 97 1 1928 1150 279 51 13 chr1 176112999 176113471 -21081961 + L1_Mur3 LINE L1 3099 3588 -2292 1 1928 2573 32 0 10 chr1 176113477 176113791 -21081641 - L1Md_F3 LINE L1 0 6584 6274 1 1928 504 72 0 0 chr1 176115497 176115566 -21079866 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1928 1894 93 3 33 chr1 176115939 176116238 -21079194 - L1_Mus3 LINE L1 -369 6269 5980 1 1928 2540 78 8 19 chr1 176116245 176116613 -21078819 + L1_Mus3 LINE L1 6275 6638 0 1 1928 26 0 0 0 chr1 176117204 176117230 -21078202 + AT_rich Low_complexity Low_complexity 1 26 0 1 1928 189 94 0 0 chr1 176117582 176117614 -21077818 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1 1928 3276 40 0 12 chr1 176117614 176118015 -21077417 - MTA_Mm LTR MaLR 0 396 1 1 1928 8131 60 46 1 chr1 176118015 176119066 -21076366 - MTA_Mm-int LTR MaLR 0 1098 1 1 1928 2961 81 2 12 chr1 176119066 176119466 -21075966 - MTA_Mm LTR MaLR 0 396 1 1 1928 282 294 38 29 chr1 176120557 176120662 -21074770 + PB1D10 SINE Alu 5 110 -7 1 1928 1974 75 19 4 chr1 176121435 176121704 -21073728 + L1_Mus1 LINE L1 6294 6566 -1 1 1928 21 0 0 0 chr1 176121923 176121944 -21073488 + AT_rich Low_complexity Low_complexity 1 21 0 1 1928 21 57 0 0 chr1 176122034 176122069 -21073363 + AT_rich Low_complexity Low_complexity 1 35 0 1 1928 198 193 0 0 chr1 176122364 176122421 -21073011 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1928 1156 218 198 19 chr1 176123176 176123494 -21071938 - MTD LTR MaLR -22 397 23 1 1928 351 0 0 0 chr1 176123610 176123649 -21071783 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1928 284 276 56 28 chr1 176124000 176124108 -21071324 - PB1D9 SINE Alu -1 119 9 1 1928 216 207 55 121 chr1 176124360 176124460 -21070972 + MIRb SINE MIR 22 121 -147 1 1928 1140 97 68 0 chr1 176124822 176124998 -21070434 + B2_Mm2 SINE B2 1 188 -7 1 1928 1712 308 62 6 chr1 176125247 176125894 -21069538 - Lx8 LINE L1 -365 7108 6426 1 1928 1220 102 17 11 chr1 176126610 176126788 -21068644 + B2_Mm2 SINE B2 3 181 -14 1 1928 32 67 0 0 chr1 176128305 176128365 -21067067 + AT_rich Low_complexity Low_complexity 1 60 0 1 1928 450 168 9 17 chr1 176130422 176130537 -21064895 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1928 1120 93 0 6 chr1 176130600 176130763 -21064669 - B2_Mm2 SINE B2 -8 187 26 2 1928 228 328 0 0 chr1 176130703 176130770 -21064662 - RSINE1 SINE B4 -79 86 20 2 1928 299 313 23 8 chr1 176130811 176130943 -21064489 + Charlie1a DNA MER1_type 1322 1455 0 2 1928 254 309 77 16 chr1 176131139 176131333 -21064099 - L1MEc LINE L1 -4493 1907 1702 2 1928 1326 78 0 0 chr1 176133551 176133731 -21061701 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 2 1928 744 126 0 0 chr1 176133731 176133850 -21061582 + (TCCCC)n Simple_repeat Simple_repeat 4 122 0 2 1928 804 161 0 62 chr1 176135686 176135832 -21059600 - B1_Mur4 SINE Alu -8 142 6 2 1928 225 108 54 0 chr1 176135807 176135844 -21059588 - MT2_Mm LTR ERVL -247 246 208 2 1928 186 191 0 0 chr1 176135923 176135965 -21059467 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 2 1928 395 270 0 20 chr1 176136208 176136310 -21059122 + PB1 SINE Alu 26 125 -2 2 1928 351 113 0 0 chr1 176136517 176136570 -21058862 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1928 1305 83 0 0 chr1 176136570 176136750 -21058682 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1928 694 0 23 0 chr1 176137786 176137872 -21057560 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 2 1928 546 241 154 20 chr1 176137926 176138224 -21057208 - Lx9 LINE L1 -217 7427 7090 2 1928 1726 209 9 90 chr1 176139728 176140195 -21055237 - RLTR11A LTR ERVK -20 508 80 2 1928 774 303 70 31 chr1 176140351 176140610 -21054822 + B4A SINE B4 22 290 -2 2 1928 321 324 51 63 chr1 176144708 176144866 -21050566 + RSINE1 SINE B4 7 162 -3 2 1928 222 62 0 0 chr1 176145294 176145326 -21050106 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1928 252 0 0 0 chr1 176146898 176146926 -21048506 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1928 1174 34 0 45 chr1 176146928 176147082 -21048350 - B1_Mm SINE Alu 0 147 1 2 1928 429 36 0 0 chr1 176147128 176147183 -21048249 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1928 726 297 5 62 chr1 176150452 176150660 -21044772 - B3A SINE B2 -2 196 1 2 1928 3962 30 0 0 chr1 176150908 176151373 -21044059 - L1Md_A LINE L1 0 6582 6118 2 1928 3499 28 0 0 chr1 176151373 176151805 -21043627 + L1Md_T LINE L1 5668 6099 -483 2 1928 240 324 13 13 chr1 176151926 176152001 -21043431 - ID4 SINE ID -4 79 5 2 1928 904 229 94 22 chr1 176152257 176152591 -21042841 - MTD LTR MaLR -29 378 1 2 1928 756 276 6 0 chr1 176153730 176153893 -21041539 + B3A SINE B2 2 165 -33 2 1928 1255 185 54 19 chr1 176153906 176154165 -21041267 - MTC LTR MaLR 0 421 154 2 1928 26 0 0 0 chr1 176154178 176154204 -21041228 + AT_rich Low_complexity Low_complexity 1 26 0 2 1928 434 268 0 0 chr1 176155046 176155128 -21040304 + PB1D7 SINE Alu 6 87 -33 2 1928 679 281 117 37 chr1 176155241 176155703 -21039729 - L1MD1 LINE L1 -335 5907 5409 2 1928 352 342 73 61 chr1 176155985 176156490 -21038942 - L1MB1 LINE L1 -243 5925 5415 2 1928 2434 298 102 17 chr1 176156650 176158444 -21036988 - L1MB1 LINE L1 -857 5283 3338 2 1928 567 0 0 0 chr1 176158451 176158514 -21036918 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1928 446 260 0 9 chr1 176159598 176159703 -21035729 - B1_Mur1 SINE Alu -5 144 41 2 1928 213 315 56 0 chr1 176159734 176159788 -21035644 - PB1D9 SINE Alu -61 59 3 2 1928 1913 252 24 14 chr1 176159973 176160388 -21035044 - MTD LTR MaLR 0 419 1 2 1929 477 0 0 0 chr1 176161031 176161084 -21034348 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1929 316 211 22 36 chr1 176161617 176161755 -21033677 + CT-rich Low_complexity Low_complexity 1 136 0 2 1929 299 250 10 98 chr1 176162025 176162111 -21033321 + B4A SINE B4 198 277 -15 2 1929 700 58 19 19 chr1 176162111 176162217 -21033215 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 2 1929 299 250 10 98 chr1 176162217 176162232 -21033200 + B4A SINE B4 278 290 -2 2 1929 23 33 0 0 chr1 176162480 176162510 -21032922 + AT_rich Low_complexity Low_complexity 1 30 0 2 1929 19814 23 0 0 chr1 176162510 176165611 -21029821 - L1Md_T LINE L1 0 6582 3482 2 1929 305 281 53 140 chr1 176165658 176165886 -21029546 - L1M4c LINE L1 -3902 2482 2275 2 1929 395 287 246 0 chr1 176166553 176166720 -21028712 + B3 SINE B2 4 211 -5 2 1929 555 259 0 188 chr1 176166761 176166937 -21028495 + B1_Mur1 SINE Alu 2 144 -5 2 1929 210 118 0 0 chr1 176166946 176166980 -21028452 + (GAA)n Simple_repeat Simple_repeat 1 34 0 2 1929 195 100 0 0 chr1 176167309 176167339 -21028093 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1929 260 183 21 21 chr1 176167343 176167438 -21027994 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 1929 1198 278 49 90 chr1 176167440 176167827 -21027605 - MTE2b LTR MaLR -8 371 1 2 1929 759 176 55 28 chr1 176168321 176168502 -21026930 - B2_Mm2 SINE B2 -6 189 4 2 1929 248 278 0 89 chr1 176168920 176168999 -21026433 + ID4_ SINE ID 12 83 0 2 1929 330 240 83 74 chr1 176169812 176169920 -21025512 + B4 SINE B4 28 136 -156 2 1929 22 0 0 0 chr1 176170040 176170062 -21025370 + AT_rich Low_complexity Low_complexity 1 22 0 2 1929 195 42 0 0 chr1 176170714 176170738 -21024694 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1929 706 181 17 0 chr1 176170861 176171038 -21024394 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1929 295 355 107 5 chr1 176171518 176171705 -21023727 - MIRc SINE MIR 0 268 63 2 1929 350 248 217 14 chr1 176172770 176172913 -21022519 + MER2 DNA MER2_type 31 202 -143 2 1929 928 316 37 3 chr1 176174827 176175151 -21020281 - MER58B DNA MER1_type -6 335 1 2 1929 188 263 107 39 chr1 176176349 176176452 -21018980 + L3 LINE CR1 2559 2668 -1821 2 1929 318 50 0 0 chr1 176177811 176177851 -21017581 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1929 380 308 70 8 chr1 176179310 176179514 -21015918 - MIRb SINE MIR -12 250 31 2 1929 252 0 0 0 chr1 176181924 176181952 -21013480 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 2 1929 2648 153 85 55 chr1 176183348 176184166 -21011266 + L1VL4 LINE L1 209 1045 -2514 2 1929 34825 63 1 24 chr1 176184166 176190080 -21005352 + L1Md_T LINE L1 99 5586 -297 2 1929 7997 58 0 0 chr1 176190080 176191076 -21004356 + L1Md_T LINE L1 5587 6582 0 2 1929 2498 140 15 17 chr1 176191079 176191557 -21003875 + MusHAL1 LINE L1 184 660 -2052 2 1929 1876 152 29 0 chr1 176191557 176191867 -21003565 + ORR1A2 LTR MaLR 1 319 -8 2 1929 11772 178 26 111 chr1 176191872 176193773 -21001659 + Lx2B LINE L1 1860 3470 -2407 2 1929 209 33 0 32 chr1 176193773 176193804 -21001628 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1929 11772 178 26 111 chr1 176193804 176194731 -21000701 + Lx2B LINE L1 3471 4449 -1428 2 1929 1695 212 62 2 chr1 176194731 176195151 -21000281 + BGLII_A LTR ERVK 1 445 0 2 1929 11772 186 30 134 chr1 176195151 176196164 -20999268 + Lx2B LINE L1 4450 5045 -838 2 1929 4805 76 18 3 chr1 176196164 176196822 -20998610 + L1_Mus4 LINE L1 5959 6626 -10 2 1929 11572 164 62 77 chr1 176196822 176198081 -20997351 + Lx2B LINE L1 5046 6342 -658 2 1929 275 316 143 15 chr1 176198304 176198500 -20996932 - MIR SINE MIR -19 243 23 2 1929 249 260 0 0 chr1 176198840 176198858 -20996574 + A-rich Low_complexity Low_complexity 6 23 0 2 1929 1189 75 0 0 chr1 176198858 176199005 -20996427 + B1_Mm SINE Alu 1 147 0 2 1929 249 260 0 0 chr1 176199005 176199059 -20996373 + A-rich Low_complexity Low_complexity 24 77 0 2 1929 1253 149 10 0 chr1 176201007 176201200 -20994232 + RLTR13D5 LTR ERVK 1 195 -838 2 1929 2569 57 9 3 chr1 176201200 176201536 -20993896 + ORR1A0 LTR MaLR 1 338 -8 2 1929 13547 51 29 2 chr1 176201540 176203284 -20992148 + ORR1A0-int LTR MaLR 1 1792 0 2 1929 2632 53 3 3 chr1 176203284 176203622 -20991810 + ORR1A0 LTR MaLR 1 338 -8 2 1929 5207 67 26 14 chr1 176203626 176204409 -20991023 + RLTR13D5 LTR ERVK 180 1033 0 2 1929 623 147 0 8 chr1 176204509 176204626 -20990806 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1929 231 207 118 65 chr1 176204992 176205085 -20990347 - L2c LINE L2 -63 3324 3227 2 1929 37271 47 12 3 chr1 176205701 176211967 -20983465 - L1Md_T LINE L1 0 6582 304 2 1929 331 291 39 23 chr1 176211995 176212125 -20983307 + MIRb SINE MIR 14 145 -123 2 1929 1900 14 0 0 chr1 176212893 176213116 -20982316 + L1Md_A LINE L1 5364 5586 -297 2 1929 8368 37 0 0 chr1 176213116 176214112 -20981320 + L1Md_A LINE L1 5587 6582 0 2 1929 280 316 109 46 chr1 176214464 176214515 -20980917 + MTEb LTR MaLR 97 143 -216 2 1929 6044 73 15 9 chr1 176214515 176215318 -20980114 - RLTR13C2 LTR ERVK 0 808 1 2 1929 387 278 103 35 chr1 176215318 176215515 -20979917 + MTEb LTR MaLR 144 379 0 2 1929 1611 290 83 40 chr1 176215629 176216280 -20979152 + Zaphod DNA Tip100 34 712 -3319 2 1929 651 280 8 89 chr1 176216290 176216525 -20978907 - B3 SINE B2 0 216 1 2 1929 463 331 25 31 chr1 176216546 176216708 -20978724 - RSINE1 SINE B4 -2 163 3 2 1929 599 332 65 71 chr1 176216722 176217063 -20978369 + Zaphod DNA Tip100 714 1054 -2977 2 1929 717 257 49 10 chr1 176217063 176217267 -20978165 + B3 SINE B2 5 216 0 2 1929 599 332 65 71 chr1 176217267 176217801 -20977631 + Zaphod DNA Tip100 1055 1583 -2448 2 1929 515 328 29 0 chr1 176217850 176218021 -20977411 + Zaphod DNA Tip100 2537 2712 -1319 2 1929 29 28 0 0 chr1 176218090 176218126 -20977306 + AT_rich Low_complexity Low_complexity 1 36 0 2 1929 353 282 68 40 chr1 176218207 176218429 -20977003 + Zaphod DNA Tip100 2834 3061 -970 2 1929 15263 156 28 20 chr1 176218431 176224514 -20970918 + ETnERV2-int LTR ERVK 736 7124 -282 2 1929 1599 15 5 0 chr1 176224514 176224709 -20970723 + RLTRETN_Mm LTR ERVK 1 196 -126 2 1929 29 28 0 0 chr1 176224831 176224867 -20970565 + AT_rich Low_complexity Low_complexity 1 36 0 2 1929 1933 292 89 22 chr1 176224948 176225776 -20969656 + Zaphod DNA Tip100 2834 3699 -332 2 1929 4063 44 2 0 chr1 176225776 176226271 -20969161 + L1Md_F3 LINE L1 6089 6584 0 2 1929 1933 292 89 22 chr1 176226271 176226507 -20968925 + Zaphod DNA Tip100 3700 3969 -62 2 1929 702 162 20 0 chr1 176226937 176227085 -20968347 - Lx2A1 LINE L1 -1 7007 6857 2 1929 306 367 51 54 chr1 176228320 176228654 -20966778 + L2 LINE L2 2698 3030 -389 2 1929 240 289 52 0 chr1 176228997 176229094 -20966338 - L1MA8 LINE L1 -24 6267 6166 2 1929 338 225 92 28 chr1 176229106 176229248 -20966184 - L1MA8 LINE L1 -249 6042 5892 2 1929 467 290 48 5 chr1 176229335 176229504 -20965928 + B3A SINE B2 42 216 0 2 1929 646 259 71 47 chr1 176229864 176230229 -20965203 + L1M2 LINE L1 4323 4696 -1447 2 1929 747 247 0 93 chr1 176230226 176230440 -20964992 + Lx6 LINE L1 6956 7149 -311 2 1929 644 239 116 62 chr1 176230447 176230982 -20964450 + L1MCa LINE L1 1042 1605 -4903 2 1929 730 230 100 77 chr1 176231105 176231364 -20964068 + B4A SINE B4 1 265 -27 3 1929 429 36 0 0 chr1 176231425 176231480 -20963952 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1929 388 295 66 18 chr1 176231674 176231902 -20963530 + L1MCa LINE L1 1988 2226 -4282 2 1929 225 318 88 73 chr1 176232390 176232651 -20962781 - MLT1B LTR MaLR -3 387 123 3 1929 618 208 0 116 chr1 176232982 176233129 -20962303 + B1_Mus2 SINE Alu 18 147 0 3 1929 931 133 6 6 chr1 176233144 176233310 -20962122 + (GA)n Simple_repeat Simple_repeat 1 166 0 3 1929 183 42 0 0 chr1 176235319 176235343 -20960089 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1929 312 235 73 0 chr1 176235468 176235536 -20959896 - Arthur1B DNA Tip100 -1152 73 1 3 1929 246 324 27 36 chr1 176235941 176236053 -20959379 - MIRb SINE MIR -38 230 120 3 1929 246 345 15 45 chr1 176236234 176236434 -20958998 + L1MC4 LINE L1 7461 7654 -388 3 1929 481 274 104 0 chr1 176236658 176236793 -20958639 - MER106B DNA MER1_type -908 151 3 3 1929 35335 27 1 7 chr1 176236834 176242019 -20953413 + L1Md_T LINE L1 440 5586 -297 3 1929 8383 31 7 0 chr1 176242019 176243007 -20952425 + L1Md_T LINE L1 5587 6581 -1 3 1929 376 281 104 20 chr1 176243256 176243401 -20952031 + MLT1A1 LTR MaLR 267 498 -7 3 1929 467 301 31 13 chr1 176243412 176243638 -20951794 + L1MB4 LINE L1 4980 5209 -937 3 1929 573 96 0 0 chr1 176243754 176243848 -20951584 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1929 262 100 56 74 chr1 176243899 176243953 -20951479 + L1M5 LINE L1 5734 5786 -378 3 1929 295 228 99 0 chr1 176243961 176244062 -20951370 + Lx4B LINE L1 6940 7050 -8 3 1929 431 292 70 57 chr1 176244089 176244492 -20950940 + L1MB4 LINE L1 5773 6180 0 3 1929 189 0 0 0 chr1 176244515 176244536 -20950896 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1929 245 382 18 18 chr1 176245758 176245870 -20949562 - PB1D10 SINE Alu -5 112 1 3 1929 540 0 0 0 chr1 176245938 176245998 -20949434 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1929 581 314 7 14 chr1 176246354 176246496 -20948936 + RSINE1 SINE B4 4 144 -21 3 1929 180 111 0 0 chr1 176246504 176246531 -20948901 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1929 384 205 97 9 chr1 176246645 176246758 -20948674 - L1M3 LINE L1 -583 5729 5607 3 1929 356 189 10 10 chr1 176246938 176247034 -20948398 - L1M3 LINE L1 -1125 5015 4920 3 1929 35 0 0 0 chr1 176247081 176247116 -20948316 + AT_rich Low_complexity Low_complexity 1 35 0 3 1929 22 80 0 0 chr1 176247267 176247317 -20948115 + AT_rich Low_complexity Low_complexity 1 50 0 3 1929 314 282 81 9 chr1 176247345 176247456 -20947976 - MIRb SINE MIR -70 198 80 3 1929 373 264 78 48 chr1 176248201 176248368 -20947064 + Charlie21a DNA MER1_type 268 439 -774 3 1929 1490 172 44 69 chr1 176248465 176248922 -20946510 - RMER17C LTR ERVK -517 441 22 3 1929 1433 135 236 14 chr1 176249005 176249487 -20945945 - RMER17C-int LTR ERVK -109 3129 2541 3 1929 755 158 61 0 chr1 176249486 176249650 -20945782 - RMER17C-int LTR ERVK -896 2342 2169 3 1929 811 193 189 55 chr1 176249653 176250092 -20945340 - RMER17C-int LTR ERVK -1233 2005 1508 3 1929 636 211 97 28 chr1 176250868 176251044 -20944388 - RMER17C-int LTR ERVK -3050 188 1 3 1929 1664 146 40 70 chr1 176251044 176251530 -20943902 - RMER17C LTR ERVK -519 439 16 3 1929 180 0 0 0 chr1 176251620 176251640 -20943792 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 3 1929 444 37 0 0 chr1 176251666 176251720 -20943712 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1929 4712 112 8 12 chr1 176251729 176252462 -20942970 - Lx3_Mus LINE L1 -52 6957 6228 3 1929 6369 99 2 11 chr1 176252464 176253429 -20942003 - L1_Mur1 LINE L1 -57 5829 4874 3 1929 2787 112 119 19 chr1 176253427 176254305 -20941127 - L1_Mur1 LINE L1 -4393 1493 209 3 1929 332 97 0 53 chr1 176254873 176254949 -20940483 + (T)n Simple_repeat Simple_repeat 1 72 0 3 1929 395 270 114 46 chr1 176255261 176255692 -20939740 + Charlie21a DNA MER1_type 695 1154 -59 3 1929 215 31 31 0 chr1 176255754 176255786 -20939646 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 1929 204 306 70 20 chr1 176256193 176256293 -20939139 - L2a LINE L2 -3 3423 3319 3 1929 288 291 53 35 chr1 176256791 176256905 -20938527 - MTEb LTR MaLR -3 376 261 3 1929 3691 255 117 10 chr1 176257342 176258698 -20936734 - Lx7 LINE L1 -169 7291 5741 3 1929 855 332 26 50 chr1 176258698 176259122 -20936310 + BGLII_B LTR ERVK 1 414 -27 3 1929 6235 180 31 18 chr1 176259148 176260520 -20934912 - Lx7 LINE L1 -137 5743 4355 3 1929 462 396 106 28 chr1 176260898 176261322 -20934110 - MLT1F2 LTR MaLR -39 521 65 3 1929 188 259 32 65 chr1 176261633 176261695 -20933737 + L2 LINE L2 431 490 -2929 3 1929 248 315 53 26 chr1 176262026 176262140 -20933292 - PB1D9 SINE Alu -1 119 3 3 1929 328 273 200 34 chr1 176264164 176264180 -20931252 + CYRA11_Mm Unknown Y-chromosome 153 386 -226 3 1929 817 182 217 16 chr1 176264180 176264364 -20931068 - URR1A DNA MER1_type -5 221 1 3 1929 325 244 11 55 chr1 176265084 176265213 -20930219 + ID4 SINE ID 7 121 -31 3 1929 291 28 0 0 chr1 176265378 176265414 -20930018 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1929 229 229 97 16 chr1 176265455 176265579 -20929853 + Lx7 LINE L1 7563 7696 0 3 1929 283 305 0 125 chr1 176265616 176265736 -20929696 - Tigger7 DNA MER2_type -12 2479 2375 3 1929 265 276 20 0 chr1 176265743 176265828 -20929604 - Tigger7 DNA MER2_type -79 2412 2326 3 1929 724 346 16 38 chr1 176265828 176266119 -20929313 + B4A SINE B4 4 290 -2 3 1929 257 250 0 15 chr1 176266133 176266198 -20929234 + (CATA)n Simple_repeat Simple_repeat 1 64 0 3 1929 373 356 0 0 chr1 176266310 176266414 -20929018 - Tigger7 DNA MER2_type -2263 228 125 3 1929 1978 47 1 0 chr1 176266951 176267216 -20928216 + L1Md_F3 LINE L1 5734 5987 -597 3 1929 964 74 0 33 chr1 176267216 176267369 -20928063 + L1Md_F3 LINE L1 6435 6582 0 3 1929 13860 70 12 8 chr1 176267718 176270479 -20924953 - L1Md_F3 LINE L1 -2 6582 3827 3 1929 818 227 127 12 chr1 176270480 176270842 -20924590 - L1Md_F LINE L1 -5735 784 412 3 1929 320 213 14 75 chr1 176271102 176271249 -20924183 + Lx9 LINE L1 7507 7644 0 3 1929 192 390 0 35 chr1 176271575 176271660 -20923772 - L3 LINE CR1 -83 4406 4325 3 1929 591 142 0 0 chr1 176271796 176271902 -20923530 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 3 1929 194 358 164 6 chr1 176272125 176272302 -20923130 - L3 LINE CR1 -165 4324 4120 3 1929 300 288 195 0 chr1 176273516 176273634 -20921798 + ID_B1 SINE B4 82 222 -2 3 1929 273 297 17 83 chr1 176273786 176273911 -20921521 + MLT1A LTR MaLR 1 119 -255 3 1929 694 233 36 30 chr1 176273946 176274114 -20921318 - B3 SINE B2 0 216 48 3 1929 882 364 107 64 chr1 176274137 176274905 -20920527 - MTE-int LTR MaLR -599 981 181 3 1929 23 0 0 0 chr1 176275186 176275209 -20920223 + AT_rich Low_complexity Low_complexity 1 23 0 3 1929 198 0 0 0 chr1 176275282 176275304 -20920128 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 3 1929 283 297 9 18 chr1 176275310 176275423 -20920009 - Lx7 LINE L1 -22 7674 7563 3 1929 4514 135 25 15 chr1 176275583 176276313 -20919119 + RMER19A LTR ERVK 1 737 0 3 1929 4093 46 48 8 chr1 176277458 176277983 -20917449 + L1Md_F3 LINE L1 6039 6584 0 3 1929 480 322 43 14 chr1 176278340 176278548 -20916884 - RMER15 LTR ERVL -15 560 347 3 1929 1550 61 0 0 chr1 176278718 176278915 -20916517 - MT2B2 LTR ERVL 0 584 388 3 1929 209 363 165 44 chr1 176279459 176280206 -20915226 + L2 LINE L2 1797 2633 -786 3 1929 237 215 31 0 chr1 176280354 176280419 -20915013 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1929 21 0 0 0 chr1 176281605 176281626 -20913806 + AT_rich Low_complexity Low_complexity 1 21 0 3 1929 1459 238 4 3 chr1 176281734 176282099 -20913333 - Lx5 LINE L1 -732 6728 6145 3 1929 684 0 0 0 chr1 176282109 176282185 -20913247 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1929 1923 264 47 13 chr1 176282200 176282757 -20912675 + Lx5 LINE L1 6455 7030 -20 3 1929 459 0 0 0 chr1 176282757 176282808 -20912624 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 3 1929 2410 139 52 5 chr1 176283330 176283749 -20911683 + Lx2A1 LINE L1 6569 7007 -1 3 1929 1140 314 74 44 chr1 176284185 176284891 -20910541 + Arthur1B DNA Tip100 497 1223 -2 3 1929 1604 88 22 9 chr1 176285014 176285244 -20910188 + L1_Mus2 LINE L1 6334 6566 0 3 1929 243 0 0 0 chr1 176285253 176285280 -20910152 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1929 228 300 35 35 chr1 176285364 176285478 -20909954 - MER20B DNA MER1_type -403 380 267 3 1929 564 15 0 0 chr1 176285714 176285779 -20909653 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1929 592 322 111 8 chr1 176285786 176286030 -20909402 - B4A SINE B4 -22 270 2 3 1929 440 266 27 18 chr1 176286040 176286151 -20909281 - PB1D7 SINE Alu 0 120 9 3 1929 346 271 73 58 chr1 176286724 176286861 -20908571 - MIR SINE MIR -30 232 94 3 1929 285 230 126 0 chr1 176286886 176286973 -20908459 + RMER1B Other Other 43 140 -926 3 1929 4237 140 32 3 chr1 176287222 176287975 -20907457 + L1_Mur2 LINE L1 3677 4451 -1426 3 1929 290 272 48 0 chr1 176288001 176288104 -20907328 + RMER1C Other Other 1226 1333 -9 3 1929 4104 73 0 0 chr1 176288855 176289417 -20906015 - L1_Mus2 LINE L1 0 6566 6039 3 1929 2952 180 68 10 chr1 176289419 176290090 -20905342 - L1Md_F LINE L1 -5407 1112 420 3 1929 254 342 14 0 chr1 176290687 176290760 -20904672 + B3A SINE B2 1 74 -124 3 1929 473 17 6 0 chr1 176290785 176290846 -20904586 + L1_Mm LINE L1 5517 5586 -297 3 241 8799 16 0 0 chr1 176290846 176291842 -20903590 + L1Md_A LINE L1 5587 6582 0 3 1930 197 360 32 63 chr1 176292115 176292210 -20903222 + MIR SINE MIR 39 130 -132 3 1930 778 274 29 0 chr1 176292577 176292781 -20902651 + B3 SINE B2 1 210 -6 3 1930 2632 289 80 27 chr1 176292787 176294418 -20901014 + L1_Rod LINE L1 3695 5411 -436 3 1930 188 288 190 21 chr1 176294418 176294560 -20900872 + MIR SINE MIR 78 243 -19 3 1930 715 208 148 34 chr1 176294630 176294894 -20900538 + L1_Rod LINE L1 5429 5722 -125 3 1930 322 301 75 8 chr1 176296130 176296264 -20899168 - HAL1-3A_ME LINE L1 -740 2118 1976 3 1930 361 306 19 100 chr1 176296265 176296425 -20899007 - B3A SINE B2 -16 182 36 3 1930 335 269 20 70 chr1 176296513 176296613 -20898819 - B1F1 SINE Alu -50 99 5 3 1930 432 0 0 0 chr1 176297244 176297292 -20898140 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1930 442 252 8 25 chr1 176297476 176297598 -20897834 + MTC LTR MaLR 1 120 -301 3 1930 2828 230 49 20 chr1 176297598 176298505 -20896927 - Lx4B LINE L1 -1 7057 6049 3 1930 255 164 45 0 chr1 176298512 176298579 -20896853 + L1_Mur1 LINE L1 2583 2652 -3234 3 1930 568 202 31 0 chr1 176298589 176298718 -20896714 - L1_Mur1 LINE L1 -3346 2540 2408 3 1930 2177 197 141 4 chr1 176300260 176300884 -20894548 + Lx5 LINE L1 5532 6246 -804 4 1930 426 206 42 46 chr1 176301213 176301329 -20894103 - B3A SINE B2 -63 135 2 4 1930 481 268 6 112 chr1 176301324 176301484 -20893948 - B1F SINE Alu -3 146 4 4 1930 365 167 19 19 chr1 176301982 176302086 -20893346 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 1930 186 43 0 0 chr1 176302097 176302120 -20893312 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1930 25 31 0 0 chr1 176302882 176302914 -20892518 + AT_rich Low_complexity Low_complexity 1 32 0 4 1930 990 301 137 8 chr1 176303129 176303611 -20891821 - Lx8 LINE L1 -4 7469 6926 4 1930 509 364 80 8 chr1 176304017 176304255 -20891177 - B4A SINE B4 -20 272 18 4 1930 621 49 0 0 chr1 176305053 176305134 -20890298 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1930 3056 90 12 2 chr1 176305969 176306448 -20888984 + MusHAL1 LINE L1 1826 2309 -403 4 1930 750 213 0 13 chr1 176306450 176306602 -20888830 - Lx9 LINE L1 -433 7211 7062 4 1930 3302 43 0 130 chr1 176306616 176307117 -20888315 - RLTR10C LTR ERVK 0 436 1 4 1930 42844 16 0 0 chr1 176307117 176312148 -20883284 - MMERVK10C-int LTR ERVK 0 7581 2552 4 1930 362 95 0 0 chr1 176312154 176312217 -20883215 - MMERVK10C-int LTR ERVK -5634 1947 1885 4 1930 306 155 17 0 chr1 176312224 176312282 -20883150 - MMERVK10C-int LTR ERVK -5627 1779 1721 4 1930 584 231 126 46 chr1 176312282 176312652 -20882780 - MMERVK10C-int LTR ERVK -4956 450 312 4 1930 855 143 4 177 chr1 176312742 176313013 -20882419 - MMERVK10C-int LTR ERVK -6629 952 729 4 1930 2657 58 0 0 chr1 176313011 176313354 -20882078 - MMERVK10C-int LTR ERVK -7238 343 1 4 1930 3330 41 0 130 chr1 176313354 176313855 -20881577 - RLTR10C LTR ERVK 0 436 1 4 1930 1993 262 64 27 chr1 176313982 176314899 -20880533 + L1_Rod LINE L1 4760 5710 -137 4 1930 651 80 18 0 chr1 176315650 176315763 -20879669 - L1Md_F3 LINE L1 0 6584 6470 4 1930 562 272 50 75 chr1 176316218 176316417 -20879015 - B3A SINE B2 -2 196 3 4 1930 486 0 0 0 chr1 176316422 176316476 -20878956 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1930 366 80 0 0 chr1 176316501 176316551 -20878881 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 4 1930 297 0 0 0 chr1 176316549 176316582 -20878850 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 4 1930 386 39 19 0 chr1 176316582 176316634 -20878798 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 4 1930 1888 136 51 3 chr1 176316634 176316930 -20878502 - Lx3A LINE L1 -13 6968 6659 4 1930 378 299 11 38 chr1 176316938 176317062 -20878370 - B1F SINE Alu -23 124 4 4 1930 399 68 0 0 chr1 176317659 176317718 -20877714 + (A)n Simple_repeat Simple_repeat 1 59 0 4 1930 1735 245 48 27 chr1 176318229 176318707 -20876725 - Lx5 LINE L1 -4 7046 6559 4 1930 231 167 0 0 chr1 176318706 176318748 -20876684 + Lx4A LINE L1 5627 5668 -1390 4 1930 512 15 15 0 chr1 176319365 176319430 -20876002 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1930 443 210 24 56 chr1 176319623 176319749 -20875683 + MTC LTR MaLR 13 134 -287 4 1930 2942 224 53 20 chr1 176319766 176320620 -20874812 - Lx4B LINE L1 -73 6927 6049 4 1930 372 125 0 14 chr1 176320624 176320697 -20874735 + MusHAL1 LINE L1 1373 1444 -1268 4 1930 611 234 41 0 chr1 176320695 176320866 -20874566 - L1_Mur1 LINE L1 -3300 2586 2409 4 1930 24 53 0 0 chr1 176322122 176322160 -20873272 + AT_rich Low_complexity Low_complexity 1 38 0 4 1930 2188 232 47 61 chr1 176323480 176324355 -20871077 + Lx5 LINE L1 904 2059 -3818 4 1930 645 14 0 0 chr1 176324355 176324429 -20871003 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1930 429 20 0 0 chr1 176324429 176324478 -20870954 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1930 2188 213 28 75 chr1 176324478 176324740 -20870692 + Lx5 LINE L1 2060 2293 -3584 4 1930 31677 74 2 16 chr1 176324738 176329889 -20865543 + L1Md_F2 LINE L1 511 5586 -297 4 1930 7891 57 1 4 chr1 176329889 176330888 -20864544 + L1Md_F2 LINE L1 5587 6582 0 4 1930 1049 211 0 0 chr1 176330965 176331183 -20864249 + Lx5 LINE L1 2279 2496 -3381 4 1930 30112 71 1 5 chr1 176331186 176336232 -20859200 + L1Md_F2 LINE L1 473 5589 -297 4 1930 7942 51 1 2 chr1 176336232 176337215 -20858217 + L1Md_F2 LINE L1 5590 6571 -14 4 1930 10965 186 83 25 chr1 176337224 176337493 -20857939 + Lx5 LINE L1 2484 2754 -3123 4 1930 1358 91 5 0 chr1 176337493 176337679 -20857753 + B2_Mm1a SINE B2 1 187 -6 4 1930 10965 186 83 25 chr1 176337679 176338273 -20857159 + Lx5 LINE L1 2755 3383 -2494 4 1930 2835 40 3 6 chr1 176338273 176338620 -20856812 + ORR1A0 LTR MaLR 1 346 0 4 1930 10965 186 83 25 chr1 176338620 176340558 -20854874 + Lx5 LINE L1 3384 5450 -427 4 1930 1079 251 56 61 chr1 176340652 176341064 -20854368 - RLTR12B LTR ERVK -43 485 76 4 1930 1823 139 3 3 chr1 176341091 176341379 -20854053 + Lx5 LINE L1 5459 5746 -131 4 1930 2728 74 14 64 chr1 176341379 176341590 -20853842 - MTB LTR MaLR 0 400 195 4 1930 2243 78 223 0 chr1 176341590 176341935 -20853497 - BGLII_Mus LTR ERVK 0 422 1 4 1930 2728 74 14 64 chr1 176341935 176342076 -20853356 - MTB LTR MaLR -206 194 69 4 1930 3181 74 0 0 chr1 176342076 176342493 -20852939 + L1Md_T LINE L1 6166 6582 0 4 1930 2728 74 14 64 chr1 176342493 176342539 -20852893 - MTB LTR MaLR -332 68 24 4 1930 360 0 0 0 chr1 176342539 176342579 -20852853 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1930 2728 74 14 64 chr1 176342579 176342599 -20852833 - MTB LTR MaLR -377 23 2 4 1930 2302 247 41 26 chr1 176342599 176342700 -20852732 + Lx5 LINE L1 5754 5855 -1195 4 1930 1099 96 0 0 chr1 176342700 176342846 -20852586 + B1_Mus1 SINE Alu 2 147 -1 4 1930 2302 263 38 17 chr1 176342846 176344064 -20851368 + Lx5 LINE L1 5856 7008 -42 4 1930 385 257 18 35 chr1 176344517 176344630 -20850802 + Lx8 LINE L1 6563 6673 -800 4 1930 2827 106 0 22 chr1 176344630 176345046 -20850386 - MTB_Mm LTR MaLR 0 407 1 4 1930 1810 267 57 70 chr1 176345050 176346021 -20849411 - RMER13B LTR ERVK -2 956 15 4 1930 616 279 6 0 chr1 176346131 176346289 -20849143 + Lx8 LINE L1 6750 6908 -565 4 1930 3345 212 77 6 chr1 176346294 176347116 -20848316 + Lx6 LINE L1 298 1177 -6551 4 1930 4519 244 35 21 chr1 176347126 176348268 -20847164 + Lx6 LINE L1 6299 7456 -4 4 1930 1390 291 59 32 chr1 176348271 176348831 -20846601 + Lx8 LINE L1 6898 7472 -1 4 1930 896 91 8 0 chr1 176349284 176349416 -20846016 + (TC)n Simple_repeat Simple_repeat 2 134 0 4 1930 24 67 0 0 chr1 176349763 176349808 -20845624 + AT_rich Low_complexity Low_complexity 1 45 0 4 1930 5670 120 26 12 chr1 176350196 176351079 -20844353 + Lx2A1 LINE L1 6112 7006 -2 4 1930 1083 160 65 23 chr1 176351475 176351692 -20843740 + URR1A DNA MER1_type 1 226 0 4 1930 4069 74 0 0 chr1 176351922 176352448 -20842984 + L1Md_T LINE L1 6057 6582 0 4 1930 21 82 0 0 chr1 176352452 176352501 -20842931 + AT_rich Low_complexity Low_complexity 1 49 0 4 1930 509 215 19 0 chr1 176352733 176352840 -20842592 + MLT2B3 LTR ERVL 3 111 -443 4 1930 277 300 12 0 chr1 176352906 176352986 -20842446 + ID4_ SINE ID 3 83 0 4 1930 486 0 0 0 chr1 176354504 176354558 -20840874 + (TTG)n Simple_repeat Simple_repeat 2 55 0 4 1930 1133 37 7 0 chr1 176354558 176354693 -20840739 - B1_Mus1 SINE Alu -10 138 3 4 1930 694 267 102 24 chr1 176354878 176355212 -20840220 - L1MA5 LINE L1 -50 6250 5891 4 1930 459 0 0 0 chr1 176356278 176356329 -20839103 + (TTA)n Simple_repeat Simple_repeat 1 51 0 4 1930 405 0 0 0 chr1 176356651 176356696 -20838736 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1930 240 35 0 0 chr1 176357274 176357303 -20838129 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1930 277 315 102 48 chr1 176357521 176357708 -20837724 + Charlie2b DNA MER1_type 7 203 -2579 4 1930 779 291 84 47 chr1 176357834 176358284 -20837148 + Charlie2b DNA MER1_type 1871 2337 -445 4 1930 637 320 72 86 chr1 176358792 176359180 -20836252 - MLT1D LTR MaLR -2 503 117 4 1930 1011 140 6 22 chr1 176359180 176359363 -20836069 - Lx LINE L1 -1 6653 6474 4 1930 637 320 72 86 chr1 176359363 176359449 -20835983 - MLT1D LTR MaLR -389 116 36 4 1930 542 15 15 0 chr1 176359501 176359568 -20835864 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 1930 618 221 5 0 chr1 176359568 176359790 -20835642 + (TG)n Simple_repeat Simple_repeat 1 223 0 4 1930 369 325 51 0 chr1 176359836 176359953 -20835479 - PB1 SINE Alu -3 124 2 4 1930 246 32 0 0 chr1 176361654 176361685 -20833747 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1930 27 0 0 0 chr1 176361976 176362003 -20833429 + AT_rich Low_complexity Low_complexity 1 27 0 4 1930 3009 73 2 8 chr1 176362456 176362854 -20832578 - MTA_Mm LTR MaLR 0 396 1 4 1930 201 74 0 0 chr1 176363277 176363304 -20832128 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1930 11783 90 10 80 chr1 176363606 176365549 -20829883 + RLTR22_Mus LTR ERVK 1 1808 0 4 1930 246 269 118 124 chr1 176365581 176365742 -20829690 - LTR87 LTR ERVL? -2 622 463 4 1930 1263 69 0 0 chr1 176365742 176366033 -20829399 + (GAAA)n Simple_repeat Simple_repeat 1 291 0 4 1930 824 217 65 14 chr1 176366680 176366895 -20828537 - Lx7 LINE L1 -1 7695 7470 4 1930 6133 117 51 21 chr1 176366918 176367042 -20828390 - Lx LINE L1 0 6654 6535 4 1930 216 67 0 0 chr1 176367042 176367072 -20828360 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 4 1930 6133 125 40 16 chr1 176367072 176368322 -20827110 - Lx LINE L1 -120 6534 5248 4 1930 4371 153 8 21 chr1 176368321 176369148 -20826284 + Lx LINE L1 4434 5250 -633 4 1930 2498 132 0 3 chr1 176369154 176369535 -20825897 - L1_Mus4 LINE L1 -3 6633 6254 4 1930 1456 133 45 8 chr1 176369535 176369801 -20825631 + L1_Mur3 LINE L1 2187 2462 -3418 4 1930 698 250 7 7 chr1 176370222 176370359 -20825073 + B3A SINE B2 1 137 -61 4 1930 713 291 23 9 chr1 176370365 176370580 -20824852 - ID_B1 SINE B4 -4 220 3 4 1930 266 153 27 40 chr1 176370587 176370662 -20824770 + T-rich Low_complexity Low_complexity 4 77 0 4 1930 21 36 0 0 chr1 176370837 176370865 -20824567 + AT_rich Low_complexity Low_complexity 1 28 0 4 1930 25 31 0 0 chr1 176371128 176371160 -20824272 + AT_rich Low_complexity Low_complexity 1 32 0 4 1930 234 0 0 0 chr1 176371952 176371978 -20823454 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1930 477 97 0 0 chr1 176374487 176374559 -20820873 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1930 27 0 0 0 chr1 176374675 176374702 -20820730 + AT_rich Low_complexity Low_complexity 1 27 0 4 1930 1005 100 0 0 chr1 176375075 176375245 -20820187 + (TC)n Simple_repeat Simple_repeat 1 170 0 4 1930 531 0 0 0 chr1 176375618 176375677 -20819755 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1930 1298 157 15 67 chr1 176376292 176376559 -20818873 - Lx3B LINE L1 -3 6970 6718 4 1930 344 327 45 32 chr1 176376920 176377075 -20818357 + RSINE1 SINE B4 3 159 -6 4 1930 726 31 69 0 chr1 176377149 176377279 -20818153 + (TC)n Simple_repeat Simple_repeat 2 140 0 4 1930 1361 65 16 0 chr1 176377730 176377915 -20817517 + B2_Mm1a SINE B2 2 189 -4 4 1930 23 33 0 0 chr1 176377916 176377946 -20817486 + AT_rich Low_complexity Low_complexity 1 30 0 4 1930 1116 185 34 0 chr1 176379751 176379956 -20815476 + B3 SINE B2 5 216 0 4 1930 22 0 0 0 chr1 176379957 176379979 -20815453 + AT_rich Low_complexity Low_complexity 1 22 0 4 1930 286 160 0 0 chr1 176380263 176380313 -20815119 + T-rich Low_complexity Low_complexity 1 50 0 4 1930 633 259 133 10 chr1 176380317 176380512 -20814920 - B4A SINE B4 -72 220 2 4 1930 23 33 0 0 chr1 176380560 176380590 -20814842 + AT_rich Low_complexity Low_complexity 1 30 0 4 1930 468 51 0 0 chr1 176381419 176381478 -20813954 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1930 495 254 16 43 chr1 176381664 176381849 -20813583 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1930 379 257 44 145 chr1 176381868 176381912 -20813520 - B4A SINE B4 0 292 270 5 1930 900 59 0 0 chr1 176381912 176382031 -20813401 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1930 379 291 43 92 chr1 176382031 176382234 -20813198 - B4A SINE B4 -23 269 8 5 1930 832 264 10 19 chr1 176382326 176382531 -20812901 + B3 SINE B2 2 204 -12 5 1930 1183 134 19 238 chr1 176383124 176383556 -20811876 + L1_Mur1 LINE L1 4922 5258 -628 5 1930 4368 180 54 14 chr1 176383558 176384470 -20810962 + Lx3C LINE L1 6027 6974 -2 5 1930 566 200 0 52 chr1 176384713 176384829 -20810603 + PB1D9 SINE Alu 2 111 -9 5 1930 297 300 8 8 chr1 176384835 176384956 -20810476 + Lx7 LINE L1 7576 7696 0 5 1930 278 217 87 3 chr1 176385187 176385272 -20810160 + MER58C DNA MER1_type 117 209 -6 5 1930 1374 251 52 2 chr1 176385656 176386060 -20809372 - Lx9 LINE L1 0 7644 7221 5 1930 465 50 0 0 chr1 176386084 176386144 -20809288 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1930 728 248 269 0 chr1 176386144 176386430 -20809002 + MTEb LTR MaLR 5 367 -12 5 1930 381 206 0 0 chr1 176386648 176386721 -20808711 + Lx9 LINE L1 6848 6920 -724 5 1930 3646 42 5 2 chr1 176386721 176387156 -20808276 + RLTR10C LTR ERVK 1 436 0 5 1930 2689 50 0 0 chr1 176387156 176387499 -20807933 + MMERVK10C-int LTR ERVK 1 343 -7238 5 1930 839 148 4 177 chr1 176387497 176387768 -20807664 + MMERVK10C-int LTR ERVK 729 952 -6629 5 1930 585 241 125 45 chr1 176387856 176388229 -20807203 + MMERVK10C-int LTR ERVK 312 668 -5469 5 1930 297 146 18 0 chr1 176388232 176388287 -20807145 + MMERVK10C-int LTR ERVK 1724 1779 -5627 5 1930 388 95 0 0 chr1 176388294 176388357 -20807075 + MMERVK10C-int LTR ERVK 1885 1947 -5634 5 1930 45727 17 0 0 chr1 176388363 176393395 -20802037 + MMERVK10C-int LTR ERVK 2552 7581 0 5 1930 3874 42 5 2 chr1 176393395 176393830 -20801602 + RLTR10C LTR ERVK 1 436 0 5 1930 956 185 100 18 chr1 176393830 176394050 -20801382 + Lx9 LINE L1 6915 7152 -492 5 1930 54 0 0 0 chr1 176394209 176394263 -20801169 + AT_rich Low_complexity Low_complexity 1 54 0 5 1930 312 300 94 6 chr1 176394278 176394459 -20800973 + L1M2 LINE L1 4871 5067 -1076 5 1930 1701 158 0 18 chr1 176394513 176394790 -20800642 - Lx4A LINE L1 -192 6866 6595 5 1930 912 216 17 6 chr1 176394790 176394962 -20800470 + B3 SINE B2 43 216 0 5 1930 300 186 29 19 chr1 176395042 176395146 -20800286 - Lx2 LINE L1 0 6997 6893 5 1930 251 278 69 55 chr1 176395293 176395472 -20799960 + L1M2 LINE L1 5577 5787 -510 5 1930 1290 244 47 56 chr1 176395473 176395812 -20799620 + MTEa LTR MaLR 4 339 -40 5 1930 186 103 0 0 chr1 176396011 176396040 -20799392 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1930 400 340 116 70 chr1 176396057 176396316 -20799116 - B4A SINE B4 -6 286 16 5 1930 2317 152 67 8 chr1 176397109 176397481 -20797951 + ORR1B1 LTR MaLR 1 394 0 5 1930 627 299 136 57 chr1 176397517 176397922 -20797510 + MT2A LTR ERVL 3 439 -94 5 1930 224 327 0 0 chr1 176398451 176398506 -20796926 + polypurine Low_complexity Low_complexity 4 58 0 5 1930 595 344 63 20 chr1 176399402 176399657 -20795775 + RMER15-int LTR ERVL 2948 3213 -1786 5 1930 414 0 0 0 chr1 176399890 176399936 -20795496 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1930 424 288 55 64 chr1 176399981 176400200 -20795232 + RMER15-int LTR ERVL 3550 3766 -1233 5 1930 301 345 70 57 chr1 176400269 176400426 -20795006 + RMER15-int LTR ERVL 3810 3968 -1031 5 1930 284 250 24 36 chr1 176400569 176400652 -20794780 + Lx8 LINE L1 6188 6269 -1204 5 1930 869 199 9 108 chr1 176400660 176400941 -20794491 + Lx4A LINE L1 390 794 -6292 5 1930 4979 117 12 9 chr1 176400950 176402295 -20793137 + Lx4A LINE L1 5738 6515 -543 5 1930 378 0 0 0 chr1 176402297 176402339 -20793093 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1930 3500 181 90 16 chr1 176402343 176403088 -20792344 - RLTR25B LTR ERVK -226 802 3 5 1930 321 133 50 0 chr1 176403096 176403156 -20792276 + Lx4A LINE L1 6520 6582 -476 5 1930 1339 113 10 5 chr1 176403127 176403323 -20792109 + Lx4A LINE L1 6697 6893 -165 5 1930 659 45 11 0 chr1 176403566 176403655 -20791777 + L1Md_T LINE L1 6493 6582 0 5 1930 665 177 114 54 chr1 176403857 176404070 -20791362 + Lx4B LINE L1 6807 7049 -9 5 1930 558 0 0 0 chr1 176404070 176404132 -20791300 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 1930 553 274 105 11 chr1 176404134 176404315 -20791117 + RMER15-int LTR ERVL 4196 4393 -606 5 1930 398 286 87 43 chr1 176404516 176404677 -20790755 + RMER15-int LTR ERVL 4653 4820 -179 5 1930 357 24 0 0 chr1 176404950 176404992 -20790440 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1930 480 35 0 0 chr1 176405097 176405155 -20790277 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1930 345 206 0 14 chr1 176405605 176405674 -20789758 - B1_Mus2 SINE Alu -40 107 40 5 1930 1075 98 18 0 chr1 176405820 176406045 -20789387 + (TA)n Simple_repeat Simple_repeat 1 229 0 5 1930 474 227 0 92 chr1 176406193 176406334 -20789098 + RMER15-int LTR ERVL 4848 4975 -24 5 1930 1175 210 16 103 chr1 176407199 176407576 -20787856 - RLTR15 LTR ERVK -12 347 4 5 1930 297 246 84 8 chr1 176407995 176408126 -20787306 + L1MA8 LINE L1 5793 5933 -358 5 1930 675 254 44 11 chr1 176408199 176408386 -20787046 - MTEa-int LTR MaLR -1406 174 6 5 1930 588 279 78 66 chr1 176408391 176408633 -20786799 - MTEa LTR MaLR 0 379 135 5 1930 1323 214 195 18 chr1 176408686 176409080 -20786352 + RMER19B LTR ERVK 439 902 0 5 1930 1355 249 58 26 chr1 176409076 176409475 -20785957 + MTD LTR MaLR 3 401 -18 5 1930 458 331 0 0 chr1 176410994 176411118 -20784314 - ID_B1 SINE B4 -20 204 81 5 1930 363 197 0 0 chr1 176411334 176411405 -20784027 - B1_Mur1 SINE Alu -2 147 77 5 1930 491 210 93 108 chr1 176411953 176412092 -20783340 + B1F1 SINE Alu 2 138 -11 5 1930 656 100 10 20 chr1 176413007 176413109 -20782323 - BGLII LTR ERVK 0 421 321 5 1930 233 239 0 0 chr1 176413188 176413234 -20782198 + MLT2B5 LTR ERVL 5 50 -667 5 1930 495 324 43 33 chr1 176413238 176413449 -20781983 + B4A SINE B4 2 214 -78 5 1930 261 0 0 0 chr1 176413600 176413629 -20781803 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1930 250 414 64 30 chr1 176413695 176413959 -20781473 + MT2A LTR ERVL 107 379 -154 5 1930 228 128 0 0 chr1 176413999 176414038 -20781394 + MT2A LTR ERVL 492 530 -3 5 1930 789 261 54 20 chr1 176415818 176416021 -20779411 + B3 SINE B2 2 211 -5 5 1930 2554 188 47 35 chr1 176416047 176416404 -20779028 - RLTR20A LTR ERVK 0 541 177 5 1930 2811 95 49 12 chr1 176416404 176416810 -20778622 + BGLII LTR ERVK 1 421 0 5 1930 576 0 0 0 chr1 176416813 176416877 -20778555 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1930 2554 188 47 35 chr1 176416877 176417050 -20778382 - RLTR20A LTR ERVK -365 176 5 5 1930 940 122 210 0 chr1 176417431 176417612 -20777820 - URR1A DNA MER1_type -7 219 1 5 1930 335 235 235 0 chr1 176418044 176418146 -20777286 - RSINE1 SINE B4 -38 127 2 5 1930 230 305 0 0 chr1 176418897 176418956 -20776476 - ID4_ SINE ID -24 59 1 5 1930 450 0 0 0 chr1 176419615 176419665 -20775767 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1930 366 300 36 9 chr1 176419668 176419779 -20775653 - RSINE1 SINE B4 -51 114 1 5 1930 254 258 177 0 chr1 176420692 176420754 -20774678 + ID4 SINE ID 2 74 -9 5 1930 426 20 0 0 chr1 176420786 176420837 -20774595 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1930 323 278 220 25 chr1 176420906 176421024 -20774408 + B1F SINE Alu 3 143 -6 5 1930 444 212 24 0 chr1 176420942 176421027 -20774405 + ID_B1 SINE B4 135 221 -3 5 1930 191 174 47 0 chr1 176421047 176421133 -20774299 + (TA)n Simple_repeat Simple_repeat 1 90 0 5 1930 652 150 26 0 chr1 176421234 176421387 -20774045 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 5 1930 1025 188 32 117 chr1 176422526 176422809 -20772623 + ORR1A4-int LTR MaLR 542 800 -1163 5 1930 1286 177 63 52 chr1 176422600 176422868 -20772564 + MT2B LTR ERVL 5 275 -326 5 241 918 125 177 37 chr1 176422868 176423158 -20772274 + LTRIS5 LTR ERV1 1 512 0 5 1931 6874 149 27 32 chr1 176423161 176423427 -20772005 + ORR1A4-int LTR MaLR 746 1017 -946 5 1931 5080 116 13 11 chr1 176423427 176424141 -20771291 - RLTR19B LTR ERVK 0 715 1 5 1931 6874 149 27 32 chr1 176424141 176425097 -20770335 + ORR1A4-int LTR MaLR 1018 1962 -1 5 1931 2079 150 6 49 chr1 176425101 176425445 -20769987 + ORR1A4 LTR MaLR 1 329 0 5 1931 3266 83 5 9 chr1 176425596 176426019 -20769413 - BGLII LTR ERVK 0 421 1 5 1931 229 324 13 26 chr1 176426105 176426181 -20769251 + MER5A DNA MER1_type 13 87 -102 5 1931 668 303 11 89 chr1 176426618 176426966 -20768466 - Lx8 LINE L1 -1 7472 7152 5 1931 21 0 0 0 chr1 176427141 176427162 -20768270 + AT_rich Low_complexity Low_complexity 1 21 0 5 1931 229 100 40 0 chr1 176427261 176427311 -20768121 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1931 213 163 0 0 chr1 176427777 176427826 -20767606 + A-rich Low_complexity Low_complexity 2 50 0 5 1931 342 0 0 0 chr1 176428213 176428251 -20767181 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1931 642 269 0 41 chr1 176428900 176429032 -20766400 + ID_B1 SINE B4 82 208 -16 5 1931 324 0 0 0 chr1 176429032 176429068 -20766364 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1931 642 269 0 41 chr1 176429068 176429082 -20766350 + ID_B1 SINE B4 209 222 -2 5 1931 716 77 0 9 chr1 176429171 176429276 -20766156 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 5 1931 418 147 0 14 chr1 176429276 176429345 -20766087 - RLTR23 LTR ERV1 -47 383 316 5 1931 996 117 0 76 chr1 176429557 176429714 -20765718 + B1_Mur4 SINE Alu 1 145 -5 5 1931 657 0 0 0 chr1 176431451 176431524 -20763908 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1931 189 0 0 0 chr1 176431524 176431544 -20763888 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1931 318 291 0 0 chr1 176434283 176434362 -20761070 - ID2 SINE ID 0 83 5 5 1931 223 264 73 113 chr1 176434848 176434945 -20760487 + B1F2 SINE Alu 6 57 -92 5 1931 885 222 62 24 chr1 176434958 176435166 -20760266 - B3 SINE B2 0 216 1 5 1931 567 301 26 102 chr1 176435486 176435712 -20759720 - ID_B1 SINE B4 -7 217 9 5 1931 230 295 51 0 chr1 176435789 176435867 -20759565 + ID4 SINE ID 1 82 -1 5 1931 382 203 58 0 chr1 176435931 176436069 -20759363 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 5 1931 378 0 0 0 chr1 176436069 176436111 -20759321 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1931 302 274 14 14 chr1 176437380 176437454 -20757978 - ID4 SINE ID -7 76 3 5 1931 454 281 104 5 chr1 176438225 176438374 -20757058 - ID_B1 SINE B4 -48 244 79 5 1931 384 215 38 0 chr1 176438511 176438590 -20756842 + B1_Mur3 SINE Alu 3 84 -65 5 1931 204 125 0 0 chr1 176438596 176438628 -20756804 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 5 1931 218 263 35 0 chr1 176439151 176439208 -20756224 + MIRm SINE MIR 212 270 -6 5 1931 276 289 107 49 chr1 176439516 176439627 -20755805 + B1F SINE Alu 1 117 -3 5 1931 188 86 29 0 chr1 176439661 176439696 -20755736 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 5 1931 180 217 0 0 chr1 176440388 176440434 -20754998 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1931 405 0 0 0 chr1 176440451 176440496 -20754936 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1931 507 297 7 35 chr1 176440511 176440654 -20754778 - RSINE1 SINE B4 -24 141 3 6 1931 305 159 16 0 chr1 176440655 176440718 -20754714 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 6 1931 259 294 0 93 chr1 176440732 176440807 -20754625 - ID4 SINE ID -10 73 6 6 1931 769 309 59 16 chr1 176440861 176441117 -20754315 + B4 SINE B4 3 269 -23 6 1931 264 59 0 0 chr1 176441117 176441151 -20754281 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1931 711 257 47 37 chr1 176441329 176441519 -20753913 - B3A SINE B2 -5 193 2 6 1931 286 229 21 0 chr1 176442123 176442219 -20753213 + CT-rich Low_complexity Low_complexity 3 100 0 6 1931 867 200 48 11 chr1 176442635 176442822 -20752610 - B3A SINE B2 0 198 5 6 1931 471 231 120 0 chr1 176443286 176443403 -20752029 - B1_Mur1 SINE Alu -18 131 1 6 1931 263 320 91 11 chr1 176444933 176445141 -20750291 - MER57C2 LTR ERV1 -136 275 45 6 1931 3242 42 34 5 chr1 176445218 176445603 -20749829 - MTA_Mm LTR MaLR 0 396 1 6 1931 417 277 0 90 chr1 176446341 176446378 -20749054 - L1M2 LINE L1 -605 5551 5516 6 1931 691 286 165 16 chr1 176446378 176446546 -20748886 - ORR1E LTR MaLR 0 359 185 6 1931 590 0 0 14 chr1 176446546 176446617 -20748815 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1931 691 286 165 16 chr1 176446617 176446757 -20748675 - ORR1E LTR MaLR -175 184 7 6 1931 417 271 50 149 chr1 176446757 176446936 -20748496 - L1M2 LINE L1 -782 5515 5356 6 1931 583 250 279 6 chr1 176446936 176447101 -20748331 - B3 SINE B2 -6 210 1 6 1931 378 275 55 118 chr1 176447101 176447247 -20748185 - L1M2 LINE L1 -780 5363 5214 6 1931 442 314 7 7 chr1 176447247 176447385 -20748047 - B4A SINE B4 -147 145 8 6 1931 446 264 36 0 chr1 176447393 176447534 -20747898 - L1M2 LINE L1 -1138 5002 4801 6 1931 645 14 0 0 chr1 176447534 176447608 -20747824 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 6 1931 355 245 11 34 chr1 176447617 176447719 -20747713 - B1_Mur3 SINE Alu 0 149 48 6 1931 459 35 0 0 chr1 176448529 176448586 -20746846 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1931 1160 275 118 85 chr1 176448621 176449634 -20745798 - L1M2 LINE L1 -1592 4551 3505 6 1931 324 283 123 25 chr1 176449617 176450017 -20745415 - L1M2 LINE L1 -640 3274 2865 6 1931 619 289 0 0 chr1 176450017 176450145 -20745287 + RSINE1 SINE B4 3 130 -35 6 1931 1017 25 0 0 chr1 176450168 176450288 -20745144 + (TTC)n Simple_repeat Simple_repeat 2 121 0 6 1931 1174 90 7 0 chr1 176450299 176450444 -20744988 - B1_Mm SINE Alu 0 147 2 6 1931 441 273 86 0 chr1 176450529 176450657 -20744775 + B1F1 SINE Alu 2 140 -9 6 1931 698 293 36 26 chr1 176450714 176450907 -20744525 - B3A SINE B2 -3 195 1 6 1931 4203 52 2 18 chr1 176451024 176451572 -20743860 - LTRIS2 LTR ERV1 0 564 26 6 1931 892 174 22 44 chr1 176451720 176451900 -20743532 - URR1A DNA MER1_type -5 221 46 6 1931 261 338 14 0 chr1 176451987 176452058 -20743374 + PB1D10 SINE Alu 1 72 -45 6 1931 212 329 40 14 chr1 176451995 176452069 -20743363 + ID_B1 SINE B4 91 166 -58 6 1931 403 291 34 157 chr1 176453032 176453472 -20741960 + RMER17C LTR ERVK 1 386 -24 6 1931 369 0 0 0 chr1 176453775 176453816 -20741616 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1931 22 80 0 0 chr1 176453889 176453939 -20741493 + AT_rich Low_complexity Low_complexity 1 50 0 6 1931 441 0 0 0 chr1 176453963 176454012 -20741420 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 1931 381 86 8 34 chr1 176454027 176454093 -20741339 - B2_Mm2 SINE B2 -102 114 47 6 1931 1217 142 11 0 chr1 176454149 176454325 -20741107 - B2_Mm1t SINE B2 -14 179 2 6 1931 400 276 73 15 chr1 176454392 176454528 -20740904 - B1F1 SINE Alu 0 149 6 6 1931 860 236 28 38 chr1 176454749 176454960 -20740472 - B3 SINE B2 -2 214 6 6 1931 1679 156 7 56 chr1 176454984 176455289 -20740143 - ORR1A4 LTR MaLR -8 321 32 6 1931 466 328 32 27 chr1 176455296 176455481 -20739951 - B3 SINE B2 -13 203 18 6 1931 270 56 0 0 chr1 176455502 176455538 -20739894 + (TAG)n Simple_repeat Simple_repeat 1 36 0 6 1931 225 306 28 0 chr1 176456225 176456297 -20739135 + ID4_ SINE ID 8 81 -2 6 1931 920 168 0 6 chr1 176456378 176456534 -20738898 - RLTR16 LTR ERVK -350 155 1 6 1931 641 11 0 44 chr1 176456559 176456650 -20738782 + L1Md_F3 LINE L1 6484 6570 -14 6 1931 435 274 105 33 chr1 176457051 176457232 -20738200 + MER2 DNA MER2_type 93 286 -59 6 1931 312 321 88 57 chr1 176457612 176457929 -20737503 - L1MC5 LINE L1 -754 7207 6881 6 1931 255 357 90 97 chr1 176457983 176458004 -20737428 + B4A SINE B4 68 87 -205 6 1931 531 288 57 14 chr1 176458004 176458145 -20737287 + B1F1 SINE Alu 2 148 -1 6 1931 352 351 87 7 chr1 176458147 176458296 -20737136 + RSINE1 SINE B4 3 163 -2 6 1931 223 308 25 13 chr1 176458412 176458491 -20736941 - MIRb SINE MIR -28 234 155 6 1931 4455 174 69 76 chr1 176458770 176459678 -20735754 - RMER19B LTR ERVK 0 902 1 6 1931 311 315 118 41 chr1 176459908 176460077 -20735355 + ORR1E LTR MaLR 1 182 -177 6 1931 2528 203 20 157 chr1 176460345 176461053 -20734379 - RMER19C LTR ERVK 0 611 1 6 1931 324 0 0 0 chr1 176461191 176461227 -20734205 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 6 1931 193 276 16 49 chr1 176461545 176461606 -20733826 - L2 LINE L2 -2911 508 450 6 1931 288 239 61 116 chr1 176461793 176461940 -20733492 + RMER5 LTR ERV1 238 376 -158 6 1931 536 225 41 8 chr1 176461986 176462107 -20733325 - B1_Mur1 SINE Alu -12 137 13 6 1931 811 202 56 15 chr1 176462121 176462317 -20733115 + RMER5 LTR ERV1 331 534 0 6 1931 326 311 79 7 chr1 176463009 176463161 -20732271 + MER58C DNA MER1_type 45 207 -8 6 1931 568 281 34 0 chr1 176463393 176463539 -20731893 - ID_B1 SINE B4 -4 220 70 6 1931 282 29 0 0 chr1 176464390 176464425 -20731007 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1931 1135 102 7 20 chr1 176464987 176465137 -20730295 + B1_Mus1 SINE Alu 1 148 0 6 1931 227 51 0 71 chr1 176465153 176465195 -20730237 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1931 723 333 49 9 chr1 176465272 176465596 -20729836 - LTR73 LTR ERV1 -201 371 35 6 1931 1123 86 0 28 chr1 176465776 176465919 -20729513 + B1_Mus1 SINE Alu 2 140 -8 6 1931 416 338 6 6 chr1 176466063 176466224 -20729208 - Lx8 LINE L1 -408 7065 6905 6 1931 952 197 91 5 chr1 176466378 176466577 -20728855 - B3 SINE B2 0 216 1 6 1931 235 0 28 28 chr1 176466829 176466865 -20728567 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 6 1931 468 216 28 2 chr1 176468230 176468337 -20727095 + B1F SINE Alu 1 105 -12 6 1931 221 57 29 0 chr1 176468523 176468558 -20726874 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 6 1931 9063 89 13 30 chr1 176468558 176470518 -20724914 - Lx3A LINE L1 -15 6966 5050 6 1931 888 150 14 9 chr1 176470542 176470753 -20724679 + CT-rich Low_complexity Low_complexity 1 211 0 6 1931 387 305 62 58 chr1 176471278 176471504 -20723928 + RMER15 LTR ERVL 348 574 -1 6 1931 23 0 0 0 chr1 176471653 176471676 -20723756 + AT_rich Low_complexity Low_complexity 1 23 0 6 1931 282 288 0 0 chr1 176471676 176471742 -20723690 - ID4 SINE ID -2 81 16 6 1931 429 36 0 0 chr1 176471888 176471943 -20723489 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1931 1083 209 86 144 chr1 176472780 176472925 -20722507 + ORR1D1 LTR MaLR 2 162 -212 6 1931 639 26 0 0 chr1 176472925 176473002 -20722430 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 6 1931 1083 209 86 144 chr1 176473002 176473252 -20722180 + ORR1D1 LTR MaLR 163 374 0 6 1931 357 244 32 32 chr1 176473255 176473348 -20722084 + PB1D10 SINE Alu 24 116 -1 6 1931 1046 152 0 0 chr1 176473350 176473508 -20721924 + B2_Mm2 SINE B2 1 158 -37 6 1931 243 0 0 0 chr1 176473510 176473537 -20721895 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1931 789 82 0 0 chr1 176473910 176474020 -20721412 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 6 1931 758 256 11 43 chr1 176475355 176475543 -20719889 - B3A SINE B2 -16 182 1 6 1931 1716 32 5 0 chr1 176476543 176476731 -20718701 - B2_Mm1t SINE B2 -4 189 1 6 1931 321 26 0 0 chr1 176477236 176477274 -20718158 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1931 342 0 0 0 chr1 176477274 176477311 -20718121 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1931 554 274 0 17 chr1 176477314 176477429 -20718003 - B1F SINE Alu -31 118 6 6 1931 471 266 71 7 chr1 176477641 176477781 -20717651 + B1F SINE Alu 1 149 0 6 1931 292 226 0 0 chr1 176478172 176478225 -20717207 + ORR1E LTR MaLR 4 56 -303 6 1931 270 312 24 89 chr1 176479366 176479489 -20715943 - MER58B DNA MER1_type 0 341 227 6 1931 3039 143 31 35 chr1 176479788 176480309 -20715123 - RLTR20B3 LTR ERVK 0 577 59 6 1931 282 288 45 115 chr1 176480724 176480924 -20714508 - MTEa LTR MaLR -2 377 179 6 1931 213 300 39 91 chr1 176481039 176481116 -20714316 - ID4_ SINE ID -9 74 2 6 1931 270 262 60 36 chr1 176482778 176482861 -20712571 + B4A SINE B4 55 139 -153 6 1931 310 265 15 0 chr1 176482908 176482976 -20712456 - ID4 SINE ID -13 70 2 6 1931 312 300 2 22 chr1 176483437 176483562 -20711870 - MIRb SINE MIR -128 140 14 6 1931 992 146 6 0 chr1 176483700 176483878 -20711554 + CT-rich Low_complexity Low_complexity 2 180 0 6 1931 240 196 20 0 chr1 176483880 176483931 -20711501 + C-rich Low_complexity Low_complexity 6 57 0 6 1931 275 316 0 13 chr1 176483936 176484013 -20711419 - ID2 SINE ID -7 76 1 6 1931 342 0 0 0 chr1 176484208 176484246 -20711186 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1931 911 254 18 12 chr1 176484699 176484929 -20710503 - ID_B1 SINE B4 0 224 1 6 1931 641 106 0 9 chr1 176485101 176485206 -20710226 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 6 1931 21 36 0 0 chr1 176485860 176485888 -20709544 + AT_rich Low_complexity Low_complexity 1 28 0 7 1931 639 183 33 0 chr1 176486373 176486493 -20708939 + MT2B LTR ERVL 2 125 -476 7 1931 230 224 0 39 chr1 176486461 176486512 -20708920 + MT2B LTR ERVL 61 109 -475 7 1931 732 218 92 14 chr1 176486525 176486739 -20708693 + MT2B LTR ERVL 349 561 -40 7 1931 204 67 0 0 chr1 176486744 176486774 -20708658 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 7 1931 2483 75 12 64 chr1 176486812 176487156 -20708276 - ORR1A2 LTR MaLR -1 326 1 7 1931 324 213 115 22 chr1 176489003 176489142 -20706290 + RMER17D2 LTR ERVK 381 532 -277 7 1931 340 231 62 33 chr1 176489419 176489569 -20705863 + MTEb LTR MaLR 256 405 -14 7 1931 1560 170 124 47 chr1 176489678 176490042 -20705390 + MTB LTR MaLR 1 392 -8 7 1931 1044 274 96 6 chr1 176491143 176491488 -20703944 - MTEb LTR MaLR -3 376 1 7 1931 1094 102 0 7 chr1 176491533 176491672 -20703760 + B1_Mm SINE Alu 1 139 -8 7 1931 387 0 0 0 chr1 176491672 176491715 -20703717 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 7 1931 346 273 229 30 chr1 176491723 176491889 -20703543 - B3A SINE B2 -3 213 15 7 1931 1841 174 236 43 chr1 176492173 176492239 -20703193 + MT2B LTR ERVL 1 67 -534 7 1931 2274 87 55 0 chr1 176492239 176492549 -20702883 - ORR1A2 LTR MaLR 0 327 1 7 1931 1841 174 236 43 chr1 176492549 176492927 -20702505 + MT2B LTR ERVL 68 530 -71 7 1931 8039 212 39 19 chr1 176492927 176495270 -20700162 + MERVL_2A-int LTR ERVL 200 2525 -3189 7 1931 8213 164 69 6 chr1 176495271 176496698 -20698734 + MERVL_2A-int LTR ERVL 4175 5690 -71 7 1931 300 231 11 42 chr1 176496704 176496799 -20698633 + ORR1A3-int LTR MaLR 565 656 -1307 7 1931 1903 188 233 38 chr1 176496836 176497289 -20698143 + MT2B LTR ERVL 1 546 -55 7 1931 662 73 18 0 chr1 176497289 176497398 -20698034 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 7 1931 1903 188 233 38 chr1 176497398 176497447 -20697985 + MT2B LTR ERVL 547 601 0 7 1931 586 292 10 61 chr1 176497736 176497933 -20697499 + B3A SINE B2 12 198 0 7 1931 741 41 0 0 chr1 176498571 176498668 -20696764 + (CA)n Simple_repeat Simple_repeat 2 98 0 7 1931 299 316 104 10 chr1 176498790 176498886 -20696546 + B4A SINE B4 15 119 -173 7 1931 541 280 17 0 chr1 176498909 176499027 -20696405 + B4A SINE B4 169 288 -4 7 1931 331 269 13 0 chr1 176499035 176499113 -20696319 - ID4_ SINE ID -3 80 2 7 1931 1321 166 8 49 chr1 176499167 176499414 -20696018 - Lx4B LINE L1 -424 6634 6398 7 1931 233 57 0 28 chr1 176499454 176499490 -20695942 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1931 610 247 22 73 chr1 176499490 176499669 -20695763 + B3A SINE B2 28 197 -1 7 1931 297 298 116 11 chr1 176500206 176500301 -20695131 + B4A SINE B4 15 119 -173 1 1931 534 300 0 8 chr1 176500324 176500445 -20694987 + B4A SINE B4 169 288 -4 1 1931 458 235 238 4 chr1 176500945 176501176 -20694256 - L1M2 LINE L1 -2583 3560 3276 2 1931 493 309 0 41 chr1 176501298 176501467 -20693965 - RSINE1 SINE B4 0 165 4 3 1931 274 300 27 0 chr1 176501627 176501737 -20693695 - L1M2 LINE L1 -3002 3141 3029 2 1931 9030 133 7 7 chr1 176501778 176503497 -20691935 - Lx2 LINE L1 0 6997 5294 4 1931 1352 70 42 18 chr1 176503497 176503714 -20691718 - L1_Mus3 LINE L1 -5 6633 6412 5 1931 9030 156 15 22 chr1 176503714 176504249 -20691183 - Lx2 LINE L1 -590 5293 4739 4 1931 198 71 0 0 chr1 176504249 176504277 -20691155 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1931 9030 156 15 22 chr1 176504277 176504769 -20690663 - Lx2 LINE L1 -1145 4738 4254 4 1931 186 43 0 0 chr1 176504769 176504792 -20690640 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1931 9030 156 15 22 chr1 176504792 176504889 -20690543 - Lx2 LINE L1 -1630 4253 4162 4 1931 5085 60 0 6 chr1 176504900 176505543 -20689889 - L1_Mus2 LINE L1 0 6566 5928 8 1931 8404 138 47 12 chr1 176505554 176507700 -20687732 - Lx2 LINE L1 -3281 2602 381 4 1931 11996 156 65 10 chr1 176507692 176508001 -20687431 - L1_Mm LINE L1 -1716 4167 3864 9 1931 186 43 0 0 chr1 176508001 176508024 -20687408 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1931 11996 156 65 10 chr1 176508024 176509527 -20685905 - L1_Mm LINE L1 -2020 3863 2358 9 1931 536 85 0 24 chr1 176509527 176509611 -20685821 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 1 1931 11996 156 65 10 chr1 176509611 176510288 -20685144 - L1_Mm LINE L1 -3526 2357 1543 9 1931 305 226 0 0 chr1 176510287 176510349 -20685083 - L1VL4 LINE L1 -5980 322 261 1 1931 352 243 115 22 chr1 176510351 176510490 -20684942 - L1M2 LINE L1 -3089 3054 2903 2 1931 1848 105 14 11 chr1 176510492 176510772 -20684660 - Lx3_Mus LINE L1 0 7009 6729 1 1931 216 0 0 0 chr1 176510797 176510821 -20684611 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1931 327 297 0 21 chr1 176510832 176510925 -20684507 - RSINE1 SINE B4 -19 146 56 1 1931 597 235 33 16 chr1 176510894 176511015 -20684417 - B1_Mur2 SINE Alu -25 124 2 1 1931 228 318 127 0 chr1 176513046 176513172 -20682260 + MIR SINE MIR 63 204 -58 1 1931 423 0 0 0 chr1 176513627 176513674 -20681758 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1931 1052 110 7 0 chr1 176515426 176515572 -20679860 - B1_Mus1 SINE Alu 0 148 2 1 1931 236 224 0 0 chr1 176516251 176516300 -20679132 + L1M3de LINE L1 2085 2133 -4520 2 1931 1086 191 33 45 chr1 176516440 176516762 -20678670 + Lx2 LINE L1 6777 6997 0 2 1931 239 294 17 59 chr1 176516804 176516995 -20678437 + L1M4c LINE L1 1580 1909 -4569 2 1931 266 153 32 16 chr1 176517190 176517259 -20678173 + L1M4c LINE L1 2383 2462 -3940 2 1931 216 67 0 0 chr1 176517278 176517308 -20678124 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 1931 253 331 78 16 chr1 176517551 176517871 -20677561 + L1_Mur2 LINE L1 2508 2851 -3029 2 1931 548 353 81 10 chr1 176517891 176518512 -20676920 + L1MA5A LINE L1 5272 5936 -361 2 1931 599 173 0 7 chr1 176519040 176519180 -20676252 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1931 401 259 153 93 chr1 176519624 176519807 -20675625 + B3A SINE B2 5 198 0 2 1931 1417 52 93 0 chr1 176520440 176520634 -20674798 - L1Md_F2 LINE L1 -2 6580 6369 2 1931 920 9 9 0 chr1 176520634 176520743 -20674689 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 1931 306 0 0 0 chr1 176521309 176521343 -20674089 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1931 353 353 91 94 chr1 176521514 176521877 -20673555 - ORR1D2 LTR MaLR 0 370 9 3 1931 189 121 0 0 chr1 176522589 176522622 -20672810 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 1931 557 320 98 11 chr1 176523789 176523963 -20671469 + B4A SINE B4 104 292 0 3 1931 180 27 0 75 chr1 176524557 176524597 -20670835 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1931 264 191 29 73 chr1 176524764 176524832 -20670600 + B3A SINE B2 1 65 -133 3 1931 471 289 42 0 chr1 176526085 176526227 -20669205 - B1_Mur1 SINE Alu -1 148 1 3 1931 1388 226 27 40 chr1 176526885 176527286 -20668146 - Lx9 LINE L1 -357 7287 6892 3 1931 224 380 104 49 chr1 176527730 176528018 -20667414 + L2a LINE L2 2680 2983 -436 3 1931 235 327 83 9 chr1 176528231 176528339 -20667093 + L2a LINE L2 3311 3426 0 3 1931 953 310 100 22 chr1 176528466 176528967 -20666465 - MER67A LTR ERV1 -1 542 3 3 1931 314 325 62 45 chr1 176529409 176529586 -20665846 + MIR SINE MIR 77 256 -6 4 1931 278 309 0 14 chr1 176529624 176529693 -20665739 - ID4 SINE ID -1 82 15 4 1931 522 329 36 6 chr1 176529692 176529860 -20665572 - MER82 DNA MER2_type -7 646 474 4 1931 735 302 68 50 chr1 176529913 176530234 -20665198 - MER82 DNA MER2_type -289 364 38 4 1931 224 253 25 74 chr1 176530267 176530348 -20665084 - MIRc SINE MIR -62 206 130 4 1931 194 228 291 19 chr1 176530991 176531094 -20664338 + MER5A DNA MER1_type 31 161 -28 4 1931 590 327 60 42 chr1 176532200 176532465 -20662967 + B4A SINE B4 8 277 -15 4 1931 328 167 0 45 chr1 176532465 176532553 -20662879 + CT-rich Low_complexity Low_complexity 1 84 0 4 1931 237 119 0 0 chr1 176532844 176532886 -20662546 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1931 351 315 34 34 chr1 176534837 176534985 -20660447 + B1F SINE Alu 1 148 -1 4 1931 624 350 0 0 chr1 176536869 176537029 -20658403 - RSINE1 SINE B4 0 165 6 4 1931 789 285 78 101 chr1 176537872 176538258 -20657174 - MTE2a LTR MaLR 0 379 3 5 1931 204 121 0 290 chr1 176539490 176539676 -20655756 + polypyrimidine Low_complexity Low_complexity 3 134 0 5 1931 1767 151 31 59 chr1 176541020 176541442 -20653990 - RMER17C LTR ERVK 0 410 1 5 1931 21 57 0 0 chr1 176541499 176541534 -20653898 + AT_rich Low_complexity Low_complexity 1 35 0 5 1931 717 153 146 0 chr1 176541535 176541679 -20653753 - B2_Mm2 SINE B2 -30 165 1 5 1931 533 328 11 5 chr1 176541899 176542089 -20653343 - B3A SINE B2 -6 192 2 5 1931 228 111 0 0 chr1 176542097 176542133 -20653299 + (CATA)n Simple_repeat Simple_repeat 3 38 0 5 1931 424 244 224 9 chr1 176542177 176542293 -20653139 - B1_Mur1 SINE Alu -6 143 3 5 1931 408 20 0 0 chr1 176543281 176543330 -20652102 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1931 518 253 83 12 chr1 176547494 176547662 -20647770 - B3A SINE B2 -16 182 3 5 1931 432 232 0 0 chr1 176548509 176548686 -20646746 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 1931 575 262 16 0 chr1 176548724 176548846 -20646586 + ID_B1 SINE B4 92 215 -9 6 1931 341 311 87 16 chr1 176549866 176550049 -20645383 - L1M4c LINE L1 -5409 975 780 6 1931 26 0 0 0 chr1 176550084 176550110 -20645322 + AT_rich Low_complexity Low_complexity 1 26 0 6 1931 1099 186 63 136 chr1 176550234 176550420 -20645012 - RMER17C LTR ERVK 0 410 232 6 1931 1104 89 0 0 chr1 176550420 176550600 -20644832 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1931 1099 186 63 136 chr1 176550600 176550676 -20644756 - RMER17C LTR ERVK -179 231 181 6 1931 693 36 0 0 chr1 176550676 176550760 -20644672 + (GGA)n Simple_repeat Simple_repeat 2 85 0 6 1931 1099 186 63 136 chr1 176550760 176550938 -20644494 - RMER17C LTR ERVK -230 180 1 6 1931 2204 278 112 27 chr1 176551929 176551983 -20643449 - RCHARR1 DNA MER1_type 0 974 929 6 1931 180 0 0 0 chr1 176551983 176552003 -20643429 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1931 2204 278 112 27 chr1 176552003 176552789 -20642643 - RCHARR1 DNA MER1_type -46 928 63 6 1931 212 245 19 0 chr1 176552865 176552918 -20642514 + CT-rich Low_complexity Low_complexity 6 59 0 6 1931 1066 206 14 0 chr1 176553406 176553629 -20641803 - URR1A DNA MER1_type 0 226 1 7 1932 766 172 75 91 chr1 176554806 176554992 -20640440 - B2_Mm2 SINE B2 -4 191 9 7 1932 216 0 0 0 chr1 176555225 176555249 -20640183 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 7 1932 222 37 0 0 chr1 176557872 176557899 -20637533 + (GAA)n Simple_repeat Simple_repeat 1 27 0 7 1932 718 354 14 7 chr1 176558611 176558887 -20636545 + B4 SINE B4 9 286 -6 7 1932 477 0 0 0 chr1 176558903 176558956 -20636476 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1932 1122 221 52 68 chr1 176560701 176561132 -20634300 + RMER10B LTR ERVL 6 395 -3 7 1932 716 310 23 11 chr1 176561132 176561302 -20634130 - ID_B1 SINE B4 -52 172 1 7 1932 867 108 0 0 chr1 176561729 176561858 -20633574 + (TC)n Simple_repeat Simple_repeat 2 130 0 7 1932 387 191 22 67 chr1 176562019 176562109 -20633323 - PB1D9 SINE Alu -2 118 33 7 1932 547 322 108 89 chr1 176563550 176563765 -20631667 + L1ME3A LINE L1 5567 5766 -407 8 1932 753 238 28 55 chr1 176563765 176563983 -20631449 + B3 SINE B2 1 212 -4 8 1932 547 322 108 89 chr1 176563983 176564238 -20631194 + L1ME3A LINE L1 5767 6046 -127 8 1932 2004 171 86 31 chr1 176564268 176564654 -20630778 + MTC LTR MaLR 15 421 0 8 1932 805 106 25 12 chr1 176564654 176564817 -20630615 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 8 1932 21 0 0 0 chr1 176565139 176565160 -20630272 + AT_rich Low_complexity Low_complexity 1 21 0 8 1932 882 236 26 2 chr1 176566262 176566455 -20628977 - B3 SINE B2 0 198 1 8 1932 539 0 0 29 chr1 176566474 176566542 -20628890 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 8 1932 596 206 7 29 chr1 176566551 176566689 -20628743 - B1_Mur3 SINE Alu -20 129 2 8 1932 254 342 25 74 chr1 176566689 176566799 -20628633 - MT2B LTR ERVL -453 148 49 8 1932 269 295 0 0 chr1 176567936 176567997 -20627435 - ID4 SINE ID -10 73 13 8 1932 315 341 77 51 chr1 176571631 176571826 -20623606 + ORR1E LTR MaLR 1 200 -159 9 1932 234 310 28 14 chr1 176572397 176572469 -20622963 + ID4_ SINE ID 9 81 -2 9 1932 276 315 14 14 chr1 176573182 176573256 -20622176 - ID_B1 SINE B4 -72 152 79 9 1932 208 286 0 30 chr1 176573293 176573394 -20622038 + GA-rich Low_complexity Low_complexity 1 98 0 9 1932 405 0 0 0 chr1 176573808 176573853 -20621579 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1932 235 288 0 48 chr1 176574102 176574164 -20621268 + ID4_ SINE ID 25 83 0 9 1932 291 278 193 28 chr1 176574374 176574555 -20620877 - MER5C DNA MER1_type -98 215 5 9 1932 180 0 0 0 chr1 176575397 176575417 -20620015 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1932 210 314 170 28 chr1 176576587 176576728 -20618704 - MER5A DNA MER1_type -28 161 1 9 1932 613 331 37 26 chr1 176577568 176577838 -20617594 - MLT1A0 LTR MaLR -24 341 69 9 1932 219 347 31 10 chr1 176577919 176578015 -20617417 + L3 LINE CR1 3884 3981 -508 1 1932 238 264 163 11 chr1 176578324 176578416 -20617016 + L3 LINE CR1 4374 4479 -10 1 1932 840 63 0 0 chr1 176578545 176578656 -20616776 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 1 1932 540 0 0 0 chr1 176578656 176578716 -20616716 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1 1932 741 269 21 5 chr1 176578720 176578907 -20616525 - B3A SINE B2 -6 192 3 1 1932 248 0 0 30 chr1 176580516 176580549 -20614883 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1932 884 248 19 5 chr1 176580680 176580887 -20614545 - B3 SINE B2 -5 211 2 1 1932 278 179 0 141 chr1 176581018 176581096 -20614336 + RSINE1 SINE B4 99 165 0 1 1932 485 340 122 31 chr1 176581170 176581614 -20613818 - LTR82A LTR ERVL -115 757 274 1 1932 213 39 0 0 chr1 176581672 176581698 -20613734 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1932 762 11 0 0 chr1 176581698 176581784 -20613648 + (GA)n Simple_repeat Simple_repeat 1 87 0 1 1932 441 0 0 0 chr1 176582581 176582630 -20612802 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1932 796 313 38 84 chr1 176582964 176583334 -20612098 + ORR1E LTR MaLR 1 353 -6 1 1932 281 354 69 80 chr1 176583651 176583915 -20611517 + MLT1A LTR MaLR 21 286 -122 1 1932 542 266 90 10 chr1 176583915 176584116 -20611316 - ID_B1 SINE B4 -7 217 1 1 1932 432 264 10 51 chr1 176584116 176584241 -20611191 + MLT1A LTR MaLR 257 406 -2 1 1932 633 27 0 0 chr1 176586017 176586092 -20609340 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1932 261 0 0 0 chr1 176586092 176586120 -20609312 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1932 26 0 0 0 chr1 176587103 176587129 -20608303 + AT_rich Low_complexity Low_complexity 1 26 0 1 1932 1018 297 87 11 chr1 176588065 176588504 -20606928 + Lx8 LINE L1 6992 7463 -10 1 1932 204 125 0 0 chr1 176589301 176589333 -20606099 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1932 363 73 0 0 chr1 176590691 176590746 -20604686 + (T)n Simple_repeat Simple_repeat 1 55 0 1 1932 246 331 85 14 chr1 176591259 176591400 -20604032 - MIRb SINE MIR -68 200 50 1 1932 22 0 0 0 chr1 176591447 176591469 -20603963 + AT_rich Low_complexity Low_complexity 1 22 0 1 1932 549 0 0 0 chr1 176591826 176591887 -20603545 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1932 634 331 64 64 chr1 176591987 176592268 -20603164 - B4A SINE B4 -6 286 6 1 1932 531 335 90 40 chr1 176592452 176592729 -20602703 + B4 SINE B4 2 292 0 1 1932 531 244 18 9 chr1 176592772 176592940 -20602492 + L1M2 LINE L1 5435 5600 -574 1 1932 4828 128 56 9 chr1 176593445 176594192 -20601240 - Lx4A LINE L1 -12 7046 6265 1 1932 977 248 255 16 chr1 176594228 176594851 -20600581 - L1_Mur3 LINE L1 -1929 3951 3180 1 1932 291 28 0 0 chr1 176595801 176595837 -20599595 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1932 1913 201 28 42 chr1 176596128 176596555 -20598877 - MTC LTR MaLR 0 421 1 1 1932 180 292 30 15 chr1 176597056 176597122 -20598310 - MIR SINE MIR 0 262 196 1 1932 1157 291 141 17 chr1 176597265 176597715 -20597717 - L1MA7 LINE L1 -6 6285 5797 1 1932 432 0 0 0 chr1 176597715 176597763 -20597669 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1932 1157 291 141 17 chr1 176597763 176598230 -20597202 - L1MA7 LINE L1 -495 5796 5255 1 1932 189 0 0 0 chr1 176598379 176598400 -20597032 + (TTAG)n Simple_repeat Simple_repeat 2 22 0 1 1932 470 248 18 44 chr1 176598428 176598542 -20596890 - PB1D9 SINE Alu -3 117 7 1 1932 315 0 0 0 chr1 176598719 176598754 -20596678 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1932 2333 35 3 3 chr1 176599766 176600050 -20595382 - L1Md_F2 LINE L1 -2 6580 6297 1 1932 266 305 62 15 chr1 176600050 176600180 -20595252 - L1MEf LINE L1 -4708 1492 1357 1 1932 364 350 58 43 chr1 176600199 176600545 -20594887 - L1MEf LINE L1 -4872 1328 978 1 1932 21 0 0 0 chr1 176600630 176600651 -20594781 + AT_rich Low_complexity Low_complexity 1 21 0 1 1932 379 269 209 3 chr1 176601790 176602077 -20593355 - L1M4c LINE L1 -4635 1749 1404 1 1932 832 271 126 3 chr1 176602111 176602444 -20592988 + MTEb LTR MaLR 4 377 -2 1 1932 297 271 10 10 chr1 176602475 176602572 -20592860 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1932 380 269 118 48 chr1 176602994 176603392 -20592040 - L1M4c LINE L1 -5004 1380 955 1 1932 357 351 35 67 chr1 176603582 176603866 -20591566 + B4A SINE B4 4 278 -14 1 1932 465 34 0 0 chr1 176604207 176604266 -20591166 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1932 562 359 93 75 chr1 176604337 176605060 -20590372 - LTR41B LTR ERVL -5 753 18 1 1932 27 0 0 0 chr1 176606153 176606180 -20589252 + AT_rich Low_complexity Low_complexity 1 27 0 1 1932 25 0 0 0 chr1 176606223 176606248 -20589184 + AT_rich Low_complexity Low_complexity 1 25 0 1 1932 991 272 20 37 chr1 176607705 176607999 -20587433 + B4A SINE B4 2 290 -2 1 1932 587 268 95 6 chr1 176608331 176608500 -20586932 - Lx8 LINE L1 -481 6992 6809 1 1932 426 257 34 60 chr1 176609071 176609220 -20586212 - B1_Mur2 SINE Alu 0 149 5 1 1932 314 270 54 68 chr1 176609441 176609588 -20585844 - MER20B DNA MER1_type -161 622 478 1 1932 26 50 0 0 chr1 176609679 176609719 -20585713 + AT_rich Low_complexity Low_complexity 1 40 0 1 1932 384 116 11 44 chr1 176610079 176610093 -20585339 + polypurine Low_complexity Low_complexity 4 15 0 1 1932 1067 58 58 0 chr1 176610093 176610232 -20585200 + B1_Mus2 SINE Alu 1 147 0 1 1932 384 116 11 44 chr1 176610232 176610307 -20585125 + GA-rich Low_complexity Low_complexity 16 89 0 1 1932 305 172 16 0 chr1 176611193 176611257 -20584175 + CT-rich Low_complexity Low_complexity 4 68 0 1 1932 189 0 0 0 chr1 176611671 176611692 -20583740 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1932 623 286 7 0 chr1 176611988 176612128 -20583304 - MTEa LTR MaLR -238 141 1 1 1932 582 266 16 0 chr1 176612171 176612299 -20583133 + RSINE1 SINE B4 3 132 -33 1 1932 26 50 0 0 chr1 176613694 176613734 -20581698 + AT_rich Low_complexity Low_complexity 1 40 0 1 1932 201 74 0 0 chr1 176615869 176615896 -20579536 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1932 521 304 24 19 chr1 176616803 176617014 -20578418 + Lx8 LINE L1 6373 6584 -889 1 1932 792 313 28 25 chr1 176617078 176617399 -20578033 + Lx8 LINE L1 6890 7211 -262 1 1932 26 0 0 0 chr1 176617711 176617737 -20577695 + AT_rich Low_complexity Low_complexity 1 26 0 1 1932 660 48 0 0 chr1 176618145 176618229 -20577203 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1932 834 122 79 0 chr1 176618880 176619019 -20576413 + MTC LTR MaLR 1 150 -271 1 1932 225 296 56 14 chr1 176619866 176619938 -20575494 + Charlie1b DNA MER1_type 35 109 -414 1 1932 401 301 21 0 chr1 176619950 176620043 -20575389 + RMER30 DNA MER1_type 2 96 -106 1 1932 333 333 11 86 chr1 176620066 176620240 -20575192 - MER82 DNA MER2_type -298 355 195 1 1932 245 335 93 46 chr1 176620717 176620933 -20574499 + MamRep1161 DNA TcMar 628 853 -104 1 1932 1103 292 157 66 chr1 176620950 176621570 -20573862 + RCHARR1 DNA MER1_type 56 731 -243 1 1932 734 76 27 27 chr1 176621590 176621739 -20573693 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 1 1932 636 197 76 30 chr1 176621747 176621878 -20573554 - B1_Mus1 SINE Alu -6 142 6 1 1932 772 227 60 13 chr1 176621884 176622116 -20573316 + RCHARR1 DNA MER1_type 730 972 -2 1 1932 441 0 0 0 chr1 176622282 176622331 -20573101 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1932 504 0 0 0 chr1 176622331 176622386 -20573046 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1932 195 69 0 0 chr1 176622823 176622852 -20572580 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1932 734 276 17 11 chr1 176622872 176623048 -20572384 - B3A SINE B2 -21 177 1 1 1932 21 0 0 0 chr1 176624754 176624775 -20570657 + AT_rich Low_complexity Low_complexity 1 21 0 1 1932 297 0 0 0 chr1 176625988 176626021 -20569411 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1932 1248 62 0 0 chr1 176626279 176626441 -20568991 + (GGGAGA)n Simple_repeat Simple_repeat 3 164 0 1 1932 309 208 97 0 chr1 176626662 176626734 -20568698 - PB1D7 SINE Alu -8 112 34 1 1932 31 0 0 0 chr1 176627103 176627134 -20568298 + AT_rich Low_complexity Low_complexity 1 31 0 1 1932 355 306 86 113 chr1 176627703 176627924 -20567508 - MER57C2 LTR ERV1 -219 215 1 1 1932 846 280 16 0 chr1 176628363 176628556 -20566876 + B3 SINE B2 3 198 -18 1 1932 198 0 0 0 chr1 176629004 176629026 -20566406 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1932 554 303 25 75 chr1 176629282 176629521 -20565911 - B4A SINE B4 -64 228 2 1 1932 21 0 0 0 chr1 176630539 176630560 -20564872 + AT_rich Low_complexity Low_complexity 1 21 0 1 1932 294 174 21 32 chr1 176631380 176631398 -20564034 + (CATATA)n Simple_repeat Simple_repeat 1 18 0 1 1932 381 43 0 0 chr1 176631398 176631445 -20563987 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1932 294 174 21 32 chr1 176631445 176631521 -20563911 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 1 1932 231 184 0 39 chr1 176632492 176632543 -20562889 + T-rich Low_complexity Low_complexity 2 50 0 1 1932 446 289 10 0 chr1 176632910 176633007 -20562425 - B3 SINE B2 0 216 119 1 1932 349 341 31 0 chr1 176634038 176634167 -20561265 + L1ME3B LINE L1 6078 6210 -30 1 1932 408 155 0 0 chr1 176635370 176635441 -20559991 + CT-rich Low_complexity Low_complexity 2 72 0 1 1932 240 59 0 0 chr1 176635472 176635506 -20559926 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 1 1932 542 278 0 0 chr1 176635530 176635645 -20559787 - RSINE1 SINE B4 -49 116 2 1 1932 695 259 83 16 chr1 176635939 176636131 -20559301 + B4 SINE B4 40 244 -48 1 1932 624 197 60 8 chr1 176637657 176637790 -20557642 + B1_Mur1 SINE Alu 1 140 -9 1 1932 402 21 0 0 chr1 176637791 176637838 -20557594 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1 1932 39354 6 0 0 chr1 176638006 176644167 -20551265 - L1Md_A LINE L1 0 6582 422 1 1932 486 0 0 0 chr1 176644668 176644722 -20550710 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1932 593 27 13 0 chr1 176645933 176646008 -20549424 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2 1932 21 0 0 0 chr1 176646850 176646871 -20548561 + AT_rich Low_complexity Low_complexity 1 21 0 2 1932 441 103 0 0 chr1 176647277 176647345 -20548087 + (AGGGGG)n Simple_repeat Simple_repeat 6 73 0 2 1932 2763 77 126 86 chr1 176647773 176648272 -20547160 - MURVY-LTR LTR ERV1 0 519 1 2 1932 240 201 0 89 chr1 176648496 176648580 -20546852 + BC1_Mm scRNA scRNA 19 97 -55 2 1932 272 27 0 26 chr1 176648685 176648723 -20546709 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1932 861 44 0 0 chr1 176648723 176648836 -20546596 + (GA)n Simple_repeat Simple_repeat 2 115 0 2 1932 539 130 0 0 chr1 176649077 176649177 -20546255 - L1_Mus3 LINE L1 0 6638 6539 2 1932 184 254 77 31 chr1 176649514 176649579 -20545853 - MIRc SINE MIR -137 131 64 2 1932 656 169 11 27 chr1 176649624 176649807 -20545625 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1932 428 328 38 64 chr1 176650344 176650657 -20544775 + RLTR25B LTR ERVK 1 305 -723 2 1932 258 295 59 82 chr1 176651459 176651629 -20543803 + RLTR25B LTR ERVK 863 1028 0 2 1932 408 231 49 16 chr1 176651729 176651852 -20543580 - BC1_Mm scRNA scRNA -24 128 2 2 1932 216 179 0 0 chr1 176652112 176652151 -20543281 + T-rich Low_complexity Low_complexity 3 41 0 2 1932 1124 68 7 0 chr1 176652652 176652798 -20542634 - B1_Mm SINE Alu 0 147 1 2 1932 23 0 0 0 chr1 176653492 176653515 -20541917 + AT_rich Low_complexity Low_complexity 1 23 0 2 1932 1014 113 0 0 chr1 176653564 176653889 -20541543 + (TG)n Simple_repeat Simple_repeat 1 325 0 2 1932 189 0 0 0 chr1 176653940 176653961 -20541471 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1932 990 118 0 0 chr1 176653974 176654307 -20541125 + (TG)n Simple_repeat Simple_repeat 1 333 0 2 1932 189 163 0 0 chr1 176654415 176654464 -20540968 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2 1932 336 127 0 0 chr1 176654500 176654555 -20540877 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1932 187 335 110 43 chr1 176655897 176656106 -20539326 + L2 LINE L2 1433 1655 -1764 2 1932 234 150 0 0 chr1 176657720 176657760 -20537672 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 1932 1173 34 0 0 chr1 176657892 176658038 -20537394 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 1932 617 238 0 27 chr1 176658912 176659059 -20536373 - ID_B1 SINE B4 0 224 82 2 1932 936 0 0 0 chr1 176659593 176659697 -20535735 + (CACAT)n Simple_repeat Simple_repeat 1 104 0 2 1932 678 295 158 39 chr1 176660418 176660672 -20534760 + B4A SINE B4 9 292 0 2 1932 408 88 0 0 chr1 176660715 176660772 -20534660 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 2 1932 348 24 0 0 chr1 176661831 176661872 -20533560 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1932 253 218 0 0 chr1 176661910 176661965 -20533467 - B4A SINE B4 -22 270 216 2 1932 352 356 126 34 chr1 176662567 176663093 -20532339 - L1MEe LINE L1 -4224 1925 1352 2 1932 325 310 93 33 chr1 176663442 176663592 -20531840 - L1MEe LINE L1 -5958 161 3 2 1932 845 244 43 57 chr1 176664276 176664485 -20530947 - B3 SINE B2 -10 206 1 2 1932 490 274 54 76 chr1 176664822 176665205 -20530227 - L1MEc LINE L1 -3666 2653 2271 2 1932 243 271 26 61 chr1 176665656 176665770 -20529662 - MTEa LTR MaLR 0 379 270 2 1932 528 16 0 0 chr1 176666052 176666113 -20529319 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1932 362 277 199 29 chr1 176666170 176666341 -20529091 - MLT1D LTR MaLR -2 503 304 2 1932 352 356 86 37 chr1 176666604 176666986 -20528446 - L1MEc LINE L1 -5916 484 84 2 1932 291 114 0 0 chr1 176667118 176667162 -20528270 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1932 363 315 7 39 chr1 176670916 176671071 -20524361 - RSINE1 SINE B4 -12 153 4 2 1932 338 270 38 57 chr1 176671600 176671706 -20523726 - PB1D9 SINE Alu -9 111 8 2 1932 1152 119 0 0 chr1 176671728 176671905 -20523527 + (TCC)n Simple_repeat Simple_repeat 2 178 0 2 1932 339 214 0 14 chr1 176673830 176673901 -20521531 + ID4 SINE ID 12 81 -2 2 1932 186 43 0 0 chr1 176674550 176674573 -20520859 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 2 1932 351 355 129 43 chr1 176674884 176675443 -20519989 - L1MEf LINE L1 -4738 1462 856 2 1932 25 65 0 0 chr1 176675443 176675489 -20519943 + AT_rich Low_complexity Low_complexity 1 46 0 2 1932 214 365 0 12 chr1 176676363 176676449 -20518983 + GA-rich Low_complexity Low_complexity 3 87 0 2 1932 793 279 93 46 chr1 176676451 176676774 -20518658 - MLT2D LTR ERVL -51 363 26 2 1932 779 336 28 7 chr1 176677419 176677704 -20517728 + B4A SINE B4 2 292 0 2 1932 384 88 0 0 chr1 176677726 176677783 -20517649 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1932 384 322 27 78 chr1 176677886 176678105 -20517327 + L1M4b LINE L1 729 936 -6398 2 1932 2663 153 36 44 chr1 176678145 176678584 -20516848 - RLTR28 LTR ERVL -2 522 83 2 1932 240 59 0 0 chr1 176678584 176678618 -20516814 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1932 2663 153 36 44 chr1 176678618 176678704 -20516728 - RLTR28 LTR ERVL -442 82 1 2 1932 459 0 0 0 chr1 176679875 176679926 -20515506 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1932 688 266 13 6 chr1 176679939 176680098 -20515334 - RSINE1 SINE B4 -4 161 2 2 1932 355 283 15 38 chr1 176680313 176680445 -20514987 + Lx8 LINE L1 6993 7121 -352 2 1932 298 297 0 56 chr1 176680730 176680837 -20514595 - PB1D10 SINE Alu -12 105 5 2 1932 297 0 0 0 chr1 176681745 176681778 -20513654 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1932 1758 175 97 34 chr1 176683429 176683843 -20511589 + BGLII_B LTR ERVK 2 441 0 2 1933 566 269 8 15 chr1 176685150 176685282 -20510150 + ID_B1 SINE B4 93 223 -1 2 1933 272 277 24 0 chr1 176685560 176685643 -20509789 - ID SINE ID -139 85 1 2 1933 207 203 0 0 chr1 176686263 176686322 -20509110 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1933 764 214 14 0 chr1 176687081 176687221 -20508211 - B1_Mur4 SINE Alu -7 143 2 2 1933 24 0 0 0 chr1 176687221 176687245 -20508187 + AT_rich Low_complexity Low_complexity 1 24 0 2 1933 967 297 55 21 chr1 176688603 176688930 -20506502 + MTE2b LTR MaLR 40 377 -2 2 1933 1402 147 121 22 chr1 176689021 176689334 -20506098 - Lx2 LINE L1 0 6997 6654 2 1933 188 300 65 91 chr1 176690033 176690187 -20505245 - MIRc SINE MIR -77 191 42 2 1933 270 136 0 0 chr1 176691175 176691219 -20504213 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1933 575 281 59 11 chr1 176691220 176691407 -20504025 - MTE2a LTR MaLR -33 346 151 2 1933 313 209 43 133 chr1 176691549 176691737 -20503695 - L1MD LINE L1 -2853 3293 3123 2 1933 1347 159 62 19 chr1 176691746 176692003 -20503429 - Lx5 LINE L1 -3 7047 6780 2 1933 603 314 6 25 chr1 176692141 176692304 -20503128 + RSINE1 SINE B4 6 165 0 2 1933 1073 176 13 13 chr1 176692533 176692758 -20502674 - URR1B DNA MER1_type 0 225 1 2 1933 306 318 50 83 chr1 176693023 176693263 -20502169 - L1M5 LINE L1 -3210 2936 2705 2 1933 311 235 58 23 chr1 176693313 176693400 -20502032 + MER104 DNA Tc2 11 100 -81 2 1933 234 75 36 36 chr1 176693576 176693631 -20501801 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1933 232 161 62 46 chr1 176693899 176693964 -20501468 + MER104 DNA Tc2 111 176 -5 2 1933 2615 196 62 5 chr1 176693967 176694556 -20500876 - Lx6 LINE L1 -184 7512 6623 2 1933 297 372 44 25 chr1 176694751 176694911 -20500521 - RSINE1 SINE B4 0 165 3 2 1933 485 233 91 23 chr1 176695478 176695610 -20499822 - B1F1 SINE Alu -8 141 1 2 1933 351 225 124 29 chr1 176695864 176695969 -20499463 - PB1D7 SINE Alu -5 115 1 2 1933 301 291 118 15 chr1 176696432 176696568 -20498864 - HERV16-int LTR ERVL -3018 1978 1829 2 1933 348 24 0 0 chr1 176696575 176696616 -20498816 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1933 682 318 67 4 chr1 176696621 176696874 -20498558 - B4A SINE B4 -23 269 1 2 1933 237 328 46 77 chr1 176698338 176698533 -20496899 - LTR16B2 LTR ERVL -151 311 123 2 1933 186 128 0 0 chr1 176698646 176698685 -20496747 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1933 438 314 50 5 chr1 176698852 176699145 -20496287 - L1MC LINE L1 -1194 4952 4638 2 1933 30 27 0 0 chr1 176699303 176699340 -20496092 + AT_rich Low_complexity Low_complexity 1 37 0 2 1933 637 304 90 17 chr1 176699346 176699815 -20495617 - L1MC LINE L1 -2305 3841 3339 2 1933 23 54 0 0 chr1 176699910 176699947 -20495485 + AT_rich Low_complexity Low_complexity 1 37 0 2 1933 24 32 0 0 chr1 176699962 176699993 -20495439 + AT_rich Low_complexity Low_complexity 1 31 0 2 1933 282 323 132 0 chr1 176700047 176700304 -20495128 - L1MD LINE L1 -3086 3060 2770 2 1933 233 250 0 0 chr1 176700515 176700567 -20494865 + L1MD2 LINE L1 6233 6284 -75 2 1933 321 47 0 0 chr1 176701031 176701074 -20494358 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1933 495 0 0 0 chr1 176701074 176701128 -20494304 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1933 584 156 8 0 chr1 176702574 176702702 -20492730 + CT-rich Low_complexity Low_complexity 2 130 0 2 1933 6925 82 9 17 chr1 176702800 176703804 -20491628 - L1Md_F2 LINE L1 0 6582 5587 2 1933 3835 63 22 0 chr1 176703816 176704357 -20491075 - L1_Mm LINE L1 -2218 3665 3113 2 1933 836 332 53 32 chr1 176705007 176705818 -20489614 - L1MA4 LINE L1 -398 5902 5042 2 1933 1886 288 67 34 chr1 176705826 176706630 -20488802 - Lx8 LINE L1 -2 7471 6641 2 1933 311 277 0 0 chr1 176706653 176706736 -20488696 - Lx8 LINE L1 -970 6503 6421 2 1933 760 275 77 17 chr1 176706750 176707050 -20488382 - L1MA4 LINE L1 -1077 5066 4749 2 1933 21 36 0 0 chr1 176707104 176707132 -20488300 + AT_rich Low_complexity Low_complexity 1 28 0 2 1933 273 266 151 17 chr1 176707287 176707636 -20487796 + L1M2 LINE L1 3050 3439 -2408 2 1933 300 328 8 54 chr1 176708097 176708226 -20487206 - L1MC5 LINE L1 -58 7903 7781 2 1933 348 0 0 55 chr1 176708760 176708815 -20486617 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2 1933 1208 61 0 0 chr1 176709749 176709897 -20485535 + B1_Mus1 SINE Alu 1 148 0 2 1933 531 250 19 62 chr1 176710488 176710650 -20484782 - RSINE1 SINE B4 -4 161 7 3 1933 218 246 0 32 chr1 176711472 176711535 -20483897 + CT-rich Low_complexity Low_complexity 2 62 0 3 1933 547 273 7 7 chr1 176711677 176711817 -20483615 - B1F SINE Alu -9 140 1 3 1933 252 268 60 24 chr1 176711958 176712042 -20483390 + B1F2 SINE Alu 5 91 -58 3 1933 405 277 110 16 chr1 176712129 176712375 -20483057 - L1ME2 LINE L1 -184 5980 5712 3 1933 2081 116 7 3 chr1 176712646 176712949 -20482483 - ORR1A2 LTR MaLR -10 317 14 3 1933 262 310 108 51 chr1 176713153 176713524 -20481908 - L1M5 LINE L1 -2206 3940 3549 3 1933 1290 20 0 0 chr1 176713579 176713726 -20481706 - B1_Mm SINE Alu 0 147 1 3 1933 761 322 133 29 chr1 176713815 176714578 -20480854 - L1M5 LINE L1 -2682 3461 2601 3 1933 519 17 0 0 chr1 176714586 176714646 -20480786 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1933 18425 13 0 0 chr1 176714660 176717552 -20477880 - L1Md_A LINE L1 0 6582 3691 3 1933 2581 42 39 0 chr1 176717550 176717909 -20477523 - L1Md_A LINE L1 -6137 587 215 3 1933 260 161 89 0 chr1 176718784 176718840 -20476592 - ID SINE ID -143 81 21 3 1933 500 322 14 0 chr1 176719005 176719148 -20476284 - U4 snRNA snRNA 0 145 1 3 1933 5199 84 21 10 chr1 176719189 176719912 -20475520 + Lx LINE L1 5918 6648 -6 3 1933 222 194 0 40 chr1 176720064 176720139 -20475293 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1933 845 275 74 0 chr1 176720750 176721019 -20474413 + Lx5 LINE L1 6734 7022 -28 3 1933 663 225 14 14 chr1 176722528 176722672 -20472760 + B4A SINE B4 145 288 -4 3 1933 217 139 28 0 chr1 176722688 176722724 -20472708 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1933 759 120 0 0 chr1 176724429 176724546 -20470886 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 3 1933 426 348 61 71 chr1 176724647 176724941 -20470491 - RMER15 LTR ERVL -15 560 270 3 1933 278 351 63 32 chr1 176725340 176725533 -20469899 + MIRb SINE MIR 47 242 -20 3 1933 729 271 55 50 chr1 176726947 176726959 -20468473 - ID_B1 SINE B4 -2 222 216 3 1933 339 25 0 0 chr1 176726959 176726999 -20468433 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 1933 729 271 55 50 chr1 176726999 176727204 -20468228 - ID_B1 SINE B4 -9 215 4 3 1933 277 24 0 45 chr1 176727733 176727777 -20467655 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1933 271 267 0 38 chr1 176729227 176729332 -20466100 - L1MA9 LINE L1 -72 6240 6140 3 1933 915 260 20 5 chr1 176730275 176730476 -20464956 - B3 SINE B2 0 216 13 3 1933 24 0 0 0 chr1 176731031 176731055 -20464377 + AT_rich Low_complexity Low_complexity 1 24 0 3 1933 231 254 33 17 chr1 176731257 176731317 -20464115 - ID2 SINE ID -21 62 2 3 1933 343 306 72 0 chr1 176731315 176731426 -20464006 - PB1D9 SINE Alu 0 120 2 3 1933 242 305 147 28 chr1 176731870 176732066 -20463366 + MIR SINE MIR 2 220 -42 3 1933 521 262 35 7 chr1 176732441 176732583 -20462849 + B1_Mur1 SINE Alu 4 149 0 3 1933 1090 37 15 0 chr1 176732860 176732996 -20462436 - B1_Mus2 SINE Alu 0 147 10 3 1933 781 140 6 22 chr1 176733506 176733689 -20461743 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1933 538 310 113 7 chr1 176734248 176734540 -20460892 + MER46C DNA MER2_type 12 334 -4 3 1933 186 341 141 19 chr1 176735154 176735423 -20460009 - L2a LINE L2 -201 3225 2924 3 1933 472 81 35 0 chr1 176736216 176736302 -20459130 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 3 1933 288 228 32 21 chr1 176736372 176736466 -20458966 - Lx9 LINE L1 -245 7399 7305 3 1933 523 177 0 23 chr1 176736576 176736709 -20458723 + Lx9 LINE L1 7514 7643 -1 3 1933 220 321 202 0 chr1 176737262 176737346 -20458086 + B2_Mm2 SINE B2 1 101 -94 3 1933 251 306 28 0 chr1 176737438 176737510 -20457922 + ID4_ SINE ID 4 77 -6 3 1933 839 165 14 18 chr1 176737998 176738452 -20456980 + (TATG)n Simple_repeat Simple_repeat 1 452 0 3 1933 26 0 0 0 chr1 176739758 176739784 -20455648 + AT_rich Low_complexity Low_complexity 1 26 0 3 1933 200 195 0 24 chr1 176739965 176740007 -20455425 + GA-rich Low_complexity Low_complexity 2 42 0 3 1933 1297 96 17 6 chr1 176740470 176740649 -20454783 - B2_Mm2 SINE B2 -14 181 1 3 1933 612 322 16 72 chr1 176740887 176741192 -20454240 + B4A SINE B4 5 292 0 3 1933 360 269 231 0 chr1 176743245 176743375 -20452057 + B4A SINE B4 123 282 -10 3 1933 413 133 0 13 chr1 176743436 176743512 -20451920 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1933 4726 92 38 1 chr1 176743647 176744324 -20451108 + L1_Mus3 LINE L1 5933 6634 -4 3 1933 226 30 0 0 chr1 176745177 176745210 -20450222 - RLTR30 LTR ERV1 -36 343 311 3 1933 2359 204 8 62 chr1 176745210 176745806 -20449626 - Lx2B LINE L1 -6 6994 6431 3 1933 684 36 0 0 chr1 176746032 176746115 -20449317 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 1933 830 281 42 9 chr1 176746135 176746347 -20449085 - ID_B1 SINE B4 -4 220 2 3 1933 486 0 0 0 chr1 176746359 176746413 -20449019 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1933 965 156 4 146 chr1 176746615 176746855 -20448577 + Lx4A LINE L1 6853 7058 0 3 1933 228 35 0 0 chr1 176747475 176747504 -20447928 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1933 585 0 0 0 chr1 176747935 176748000 -20447432 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1933 813 73 0 0 chr1 176748069 176748178 -20447254 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 3 1933 21 0 0 0 chr1 176748669 176748690 -20446742 + AT_rich Low_complexity Low_complexity 1 21 0 3 1933 243 304 72 0 chr1 176749120 176749216 -20446216 + B1_Mus1 SINE Alu 6 108 -12 3 1933 210 71 0 0 chr1 176749266 176749294 -20446138 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 3 1933 183 211 36 55 chr1 176750452 176750507 -20444925 - L2 LINE L2 -867 2552 2499 3 1933 754 284 10 58 chr1 176750779 176750985 -20444447 - B3A SINE B2 0 198 3 3 1933 192 77 0 0 chr1 176752008 176752034 -20443398 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1933 233 293 0 0 chr1 176752046 176752121 -20443311 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1933 24 53 0 0 chr1 176752825 176752863 -20442569 + AT_rich Low_complexity Low_complexity 1 38 0 3 1933 411 73 0 0 chr1 176752885 176752940 -20442492 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1933 1077 278 90 57 chr1 176753429 176753795 -20441637 - MTE2b LTR MaLR -1 378 1 3 1933 309 234 31 31 chr1 176754332 176754429 -20441003 + MLT1A1 LTR MaLR 308 404 -4 3 1933 827 254 338 99 chr1 176754713 176755141 -20440291 - MT2A LTR ERVL 0 533 4 3 1933 430 101 0 0 chr1 176755147 176755216 -20440216 - MERVL_2A-int LTR ERVL -4 5757 5689 3 1933 819 135 94 41 chr1 176755384 176755554 -20439878 + B2_Mm2 SINE B2 7 185 -10 3 1933 4065 63 22 0 chr1 176755674 176756182 -20439250 + L1_Mus2 LINE L1 6048 6566 0 3 1933 2641 144 15 70 chr1 176757369 176757899 -20437533 + Lx3C LINE L1 6476 6976 0 3 1933 183 184 0 0 chr1 176758462 176758500 -20436932 + T-rich Low_complexity Low_complexity 1 38 0 3 1933 242 299 103 0 chr1 176758596 176758703 -20436729 + L1M7 LINE L1 46 163 -6055 3 1933 993 41 0 0 chr1 176758868 176758990 -20436442 + (TCTCCC)n Simple_repeat Simple_repeat 5 126 0 3 1933 1126 178 27 22 chr1 176758990 176759214 -20436218 - Lx6 LINE L1 -614 6846 6622 3 1933 575 336 45 40 chr1 176759311 176759534 -20435898 + ID_B1 SINE B4 1 224 0 3 1933 239 229 141 14 chr1 176759854 176759925 -20435507 + ID4 SINE ID 2 81 -2 3 1933 260 307 27 0 chr1 176760189 176760264 -20435168 + ID4 SINE ID 7 83 0 3 1933 306 0 0 0 chr1 176760272 176760306 -20435126 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1933 195 42 0 0 chr1 176760545 176760569 -20434863 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1933 538 301 25 38 chr1 176760804 176760963 -20434469 + RSINE1 SINE B4 9 165 0 3 1933 2595 38 3 6 chr1 176760993 176761314 -20434118 + L1_Mus1 LINE L1 6248 6567 0 3 1933 6076 5 0 0 chr1 176762104 176762775 -20432657 + L1Md_A LINE L1 5912 6582 0 3 1933 276 264 90 35 chr1 176763311 176763456 -20431976 + L1MDa LINE L1 40 192 -6441 3 1933 320 235 45 34 chr1 176767584 176767672 -20427760 + MTEb LTR MaLR 1 89 -270 3 1933 359 227 56 63 chr1 176767672 176767806 -20427626 + MTEb LTR MaLR 208 351 -28 3 1933 351 0 0 0 chr1 176767806 176767845 -20427587 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 1933 277 308 96 0 chr1 176768197 176768312 -20427120 - MIRb SINE MIR -103 159 36 3 1933 309 220 72 132 chr1 176768720 176768872 -20426560 + MTEb LTR MaLR 225 367 -12 3 1933 791 266 28 44 chr1 176768980 176769228 -20426204 + B4A SINE B4 3 246 -46 3 1933 192 178 0 82 chr1 176770301 176770350 -20425082 + L3 LINE CR1 4362 4406 -83 3 1933 417 284 89 36 chr1 176771237 176771405 -20424027 + MER58A DNA MER1_type 9 185 -39 3 1933 1390 62 0 11 chr1 176771407 176771586 -20423846 + B2_Mm2 SINE B2 1 177 -18 3 1933 564 140 0 0 chr1 176771586 176771679 -20423753 + (TAAA)n Simple_repeat Simple_repeat 2 94 0 3 1933 270 81 0 0 chr1 176772312 176772349 -20423083 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 3 1933 348 301 57 44 chr1 176772374 176772603 -20422829 - L1M5 LINE L1 -601 5639 5408 3 1933 239 234 49 49 chr1 176772650 176772731 -20422701 - LTR41B LTR ERVL -217 541 461 3 1933 248 154 0 30 chr1 176773031 176773098 -20422334 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 3 1933 622 193 9 0 chr1 176773287 176773396 -20422036 - B1_Mus2 SINE Alu -1 146 37 3 1933 27 0 0 0 chr1 176773829 176773856 -20421576 + AT_rich Low_complexity Low_complexity 1 27 0 3 1933 231 331 148 21 chr1 176774330 176774669 -20420763 + Charlie2b DNA MER1_type 2200 2581 -201 3 1933 277 253 80 0 chr1 176776466 176776541 -20418891 - ID4_ SINE ID -1 82 2 4 1933 343 161 6 0 chr1 176776607 176776678 -20418754 - L1MB8 LINE L1 -185 5994 5920 4 1933 973 286 28 35 chr1 176776707 176776997 -20418435 + B4 SINE B4 5 292 0 4 1933 259 383 125 0 chr1 176777263 176777383 -20418049 + L2b LINE L2 3241 3375 0 4 1933 189 135 81 0 chr1 176777536 176777573 -20417859 - L2a LINE L2 -3 3423 3384 4 1933 503 378 47 13 chr1 176778520 176778753 -20416679 + B4A SINE B4 52 292 0 4 1933 305 24 0 23 chr1 176778802 176778845 -20416587 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1933 325 323 68 21 chr1 176779043 176779233 -20416199 + L1MB5 LINE L1 5954 6152 -22 4 1933 263 247 148 0 chr1 176779235 176779316 -20416116 - PB1 SINE Alu -3 124 32 4 1933 483 173 0 0 chr1 176779713 176779852 -20415580 + (TATATG)n Simple_repeat Simple_repeat 5 143 0 4 1933 265 250 0 105 chr1 176780061 176780137 -20415295 + MER5A DNA MER1_type 85 152 -37 4 1933 254 277 0 15 chr1 176780499 176780565 -20414867 - MIRm SINE MIR -8 268 204 4 1933 246 336 43 51 chr1 176780565 176780637 -20414795 - L2a LINE L2 -10 3416 3280 4 1933 236 316 13 0 chr1 176780681 176780757 -20414675 + ID4 SINE ID 3 79 -4 4 1933 303 250 59 0 chr1 176780818 176780886 -20414546 + B1F SINE Alu 57 128 -21 4 1933 434 18 18 0 chr1 176782569 176782624 -20412808 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1933 558 247 251 18 chr1 176782643 176782866 -20412566 - B4A SINE B4 -17 275 1 4 1933 251 148 56 0 chr1 176783613 176783667 -20411765 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 4 1933 218 252 8 0 chr1 176783670 176783682 -20411750 + (CA)n Simple_repeat Simple_repeat 2 13 0 4 1933 1477 218 44 54 chr1 176783682 176783882 -20411550 + ORR1C2 LTR MaLR 1 193 -191 4 1933 279 0 0 0 chr1 176783882 176783913 -20411519 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1933 1477 218 44 54 chr1 176783913 176784100 -20411332 + ORR1C2 LTR MaLR 194 384 0 4 1933 218 252 8 0 chr1 176784100 176784210 -20411222 + (CA)n Simple_repeat Simple_repeat 2 112 0 4 1933 365 169 0 0 chr1 176784210 176784269 -20411163 + HAL1-3A_ME LINE L1 1976 2034 -824 4 1933 443 366 37 41 chr1 176784725 176784970 -20410462 - B4A SINE B4 -34 258 15 4 1933 571 90 18 18 chr1 176785244 176785357 -20410075 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 4 1933 23 0 0 0 chr1 176785375 176785398 -20410034 + AT_rich Low_complexity Low_complexity 1 23 0 4 1933 189 224 34 34 chr1 176786700 176786788 -20408644 + GA-rich Low_complexity Low_complexity 2 89 0 4 1933 268 333 62 34 chr1 176786953 176787099 -20408333 - MER20 DNA MER1_type -6 213 64 4 1933 237 313 25 51 chr1 176787264 176787422 -20408010 - L1MC LINE L1 -2145 5737 5584 4 1933 232 281 11 43 chr1 176787642 176787735 -20407697 + (TATG)n Simple_repeat Simple_repeat 1 90 0 4 1933 703 318 15 15 chr1 176787778 176787982 -20407450 - B4A SINE B4 -86 206 3 4 1933 273 29 0 0 chr1 176788289 176788323 -20407109 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1933 183 80 0 0 chr1 176788417 176788442 -20406990 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1933 662 131 0 0 chr1 176788443 176788542 -20406890 - B1_Mur4 SINE Alu -10 140 42 4 1933 395 338 81 6 chr1 176788965 176789126 -20406306 + Charlie12 DNA MER1_type 1 173 -2700 4 1933 630 241 6 71 chr1 176788997 176789167 -20406265 - RMER30 DNA MER1_type -43 159 1 4 1933 347 341 22 82 chr1 176789208 176789570 -20405862 + ORR1E LTR MaLR 1 358 -21 4 1933 251 277 78 10 chr1 176789796 176789898 -20405534 - MLT1D LTR MaLR -49 456 348 4 1933 825 11 0 0 chr1 176789976 176790070 -20405362 + (TC)n Simple_repeat Simple_repeat 2 95 0 4 1933 289 358 36 9 chr1 176790071 176790181 -20405251 - B1_Mus2 SINE Alu -34 113 1 4 1933 495 328 97 10 chr1 176790200 176790406 -20405026 - MLT1D LTR MaLR -281 224 1 4 1933 453 36 0 0 chr1 176791401 176791456 -20403976 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1933 441 322 106 72 chr1 176791515 176791779 -20403653 - B4 SINE B4 -18 274 2 4 1933 297 135 0 0 chr1 176793681 176793733 -20401699 + (ATG)n Simple_repeat Simple_repeat 3 54 0 4 1933 21 0 0 0 chr1 176794072 176794093 -20401339 + AT_rich Low_complexity Low_complexity 1 21 0 4 1933 251 291 108 16 chr1 176794649 176794778 -20400654 + MER103 DNA DNA 9 149 -17 4 1933 913 242 0 62 chr1 176795252 176795276 -20400156 - B3A SINE B2 0 198 177 4 1933 1023 113 0 14 chr1 176795276 176795413 -20400019 + B1_Mus1 SINE Alu 2 138 -10 4 1933 198 0 0 0 chr1 176795413 176795435 -20399997 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1933 198 0 0 0 chr1 176795448 176795470 -20399962 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1933 913 242 0 62 chr1 176795470 176795648 -20399784 - B3A SINE B2 -28 170 1 4 1933 24 0 0 0 chr1 176796802 176796826 -20398606 + AT_rich Low_complexity Low_complexity 1 24 0 4 1933 356 200 9 0 chr1 176797525 176797630 -20397802 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 1933 231 132 0 26 chr1 176798364 176798403 -20397029 + U2 snRNA snRNA 1 38 -150 4 1933 3759 116 6 7 chr1 176798515 176799054 -20396378 + Lx4A LINE L1 6520 7057 -1 4 1933 228 171 0 0 chr1 176799987 176800028 -20395404 + B4A SINE B4 7 47 -245 4 1933 500 106 12 0 chr1 176800133 176800218 -20395214 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 1933 806 268 3 108 chr1 176801558 176801863 -20393569 + B4A SINE B4 2 274 -18 4 1933 690 13 0 0 chr1 176801949 176802028 -20393404 + (TC)n Simple_repeat Simple_repeat 1 79 0 4 1933 654 13 0 0 chr1 176802105 176802180 -20393252 + (GGGGA)n Simple_repeat Simple_repeat 1 75 0 4 1933 1347 72 0 0 chr1 176802180 176802360 -20393072 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1933 378 0 0 0 chr1 176802363 176802405 -20393027 + (GAGAA)n Simple_repeat Simple_repeat 1 42 0 4 1933 438 20 0 0 chr1 176804393 176804444 -20390988 + (TTAG)n Simple_repeat Simple_repeat 3 53 0 4 1933 603 321 14 0 chr1 176804463 176804603 -20390829 - RSINE1 SINE B4 -23 142 1 4 1933 456 19 0 0 chr1 176804606 176804659 -20390773 + (TGG)n Simple_repeat Simple_repeat 1 53 0 4 1933 280 287 73 18 chr1 176804683 176804793 -20390639 - PB1 SINE Alu -2 125 10 4 1933 27 73 0 0 chr1 176806524 176806579 -20388853 + AT_rich Low_complexity Low_complexity 1 55 0 4 1933 413 211 151 6 chr1 176807154 176807221 -20388211 + RMER1A Other Other 830 900 -130 4 1933 207 0 0 0 chr1 176807221 176807244 -20388188 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1933 413 211 151 6 chr1 176807244 176807348 -20388084 + RMER1A Other Other 901 1025 -5 4 1933 1101 108 0 0 chr1 176809639 176809787 -20385645 - B1_Mus1 SINE Alu 0 148 1 4 1933 552 30 0 0 chr1 176809899 176809965 -20385467 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1933 489 62 0 0 chr1 176810790 176810855 -20384577 + (TATG)n Simple_repeat Simple_repeat 3 67 0 4 1933 511 250 0 35 chr1 176810932 176811048 -20384384 - PB1D7 SINE Alu -2 118 7 4 1933 296 335 52 19 chr1 176811148 176811303 -20384129 - MamRep564 Unknown Unknown -159 198 39 4 1933 262 265 78 67 chr1 176811407 176811517 -20383915 + MIR SINE MIR 33 143 -125 4 1933 2832 157 63 73 chr1 176811851 176812441 -20382991 - RMER4B LTR ERVK 0 585 2 4 1933 1110 215 5 0 chr1 176812479 176812688 -20382744 + B3 SINE B2 2 211 -5 4 1933 252 354 0 0 chr1 176813366 176813431 -20382001 + RSINE1 SINE B4 2 66 -99 4 1933 432 0 0 0 chr1 176813431 176813479 -20381953 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1933 660 331 38 42 chr1 176813607 176813872 -20381560 + B4A SINE B4 7 270 -22 4 1933 357 23 0 0 chr1 176813872 176813916 -20381516 - L1_Mus1 LINE L1 -516 6051 6008 4 1933 3507 81 2 4 chr1 176813916 176814385 -20381047 + L1_Mus1 LINE L1 6099 6566 -1 4 1933 271 267 0 26 chr1 176814402 176814479 -20380953 + B4A SINE B4 216 290 -2 4 1933 370 240 100 8 chr1 176815099 176815229 -20380203 - Charlie1 DNA MER1_type -24 2757 2616 4 1933 483 298 41 8 chr1 176815390 176815512 -20379920 + B1F SINE Alu 1 126 -23 4 1933 260 329 32 39 chr1 176815560 176815715 -20379717 - Charlie1 DNA MER1_type -431 2350 2197 4 1934 290 333 40 0 chr1 176816193 176816292 -20379140 - B1F1 SINE Alu -46 103 1 4 1934 314 256 69 11 chr1 176817275 176817362 -20378070 + B1F SINE Alu 36 127 -22 4 1934 225 274 0 0 chr1 176817363 176817414 -20378018 + A-rich Low_complexity Low_complexity 1 51 0 4 1934 821 114 30 20 chr1 176818320 176818615 -20376817 + (CA)n Simple_repeat Simple_repeat 1 298 0 4 1934 22 0 0 0 chr1 176820846 176820868 -20374564 + AT_rich Low_complexity Low_complexity 1 22 0 4 1934 401 298 116 72 chr1 176820930 176821158 -20374274 + L1ME1 LINE L1 5559 5822 -357 4 1934 806 267 26 85 chr1 176821158 176821465 -20373967 + B4A SINE B4 1 289 -3 4 1934 401 298 116 72 chr1 176821465 176821598 -20373834 + L1ME1 LINE L1 5823 5936 -243 4 1934 290 169 0 15 chr1 176821745 176821811 -20373621 + CT-rich Low_complexity Low_complexity 4 68 0 4 1934 1127 58 0 0 chr1 176823884 176824022 -20371410 + B1_Mus2 SINE Alu 1 138 -9 4 1934 450 0 0 0 chr1 176824022 176824072 -20371360 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 4 1934 244 290 18 99 chr1 176824148 176824259 -20371173 + ORR1E LTR MaLR 19 120 -239 4 1934 25 51 0 0 chr1 176824684 176824723 -20370709 + AT_rich Low_complexity Low_complexity 1 39 0 4 1934 297 75 0 0 chr1 176825026 176825066 -20370366 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1934 207 196 0 0 chr1 176825269 176825315 -20370117 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1934 591 198 86 16 chr1 176826205 176826333 -20369099 + B1F2 SINE Alu 1 137 -12 4 1934 255 61 0 0 chr1 176826600 176826633 -20368799 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1934 325 213 203 94 chr1 176827533 176827725 -20367707 - B3 SINE B2 -2 214 2 4 1934 715 343 41 22 chr1 176828231 176828502 -20366930 - B4A SINE B4 -16 276 1 4 1934 287 355 0 88 chr1 176829914 176830050 -20365382 + B1F SINE Alu 1 144 -5 5 1934 221 286 63 0 chr1 176830061 176830124 -20365308 + ID SINE ID 2 68 -156 5 1934 225 386 27 60 chr1 176830905 176831054 -20364378 + LTR16C LTR ERVL 177 320 -169 5 1934 850 307 92 3 chr1 176831420 176831756 -20363676 + Lx8 LINE L1 6967 7332 -141 5 1934 588 29 0 0 chr1 176832259 176832329 -20363103 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 1934 255 338 195 0 chr1 176832565 176832719 -20362713 - Tigger7 DNA MER2_type -50 2441 2258 5 1934 204 242 40 74 chr1 176833011 176833178 -20362254 - L2b LINE L2 -178 3209 3038 5 1934 323 299 134 0 chr1 176833437 176833564 -20361868 - RSINE1 SINE B4 -18 147 4 5 1934 393 244 182 50 chr1 176833611 176833732 -20361700 - B1F1 SINE Alu 0 149 13 5 1934 226 338 105 18 chr1 176833778 176833982 -20361450 + L2a LINE L2 3181 3425 -1 5 1934 363 23 0 0 chr1 176834510 176834554 -20360878 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1934 354 263 147 0 chr1 176834759 176834854 -20360578 - PB1D10 SINE Alu 0 117 9 5 1934 578 295 42 23 chr1 176835166 176835381 -20360051 + ID_B1 SINE B4 1 219 -5 5 1934 417 292 16 24 chr1 176836306 176836429 -20359003 + MER94 DNA AcHobo 13 134 0 5 1934 233 77 115 0 chr1 176838307 176838359 -20357073 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 5 1934 297 0 0 0 chr1 176838790 176838823 -20356609 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1934 710 242 13 19 chr1 176838835 176838991 -20356441 - B3A SINE B2 -42 156 2 5 1934 328 291 19 19 chr1 176838995 176839100 -20356332 - PB1D7 SINE Alu -1 119 15 5 1934 327 299 132 89 chr1 176839100 176839208 -20356224 - ID_B1 SINE B4 -1 223 2 5 1934 323 336 58 0 chr1 176839217 176839354 -20356078 + L2c LINE L2 3234 3378 -9 5 1934 2509 68 6 0 chr1 176840677 176840988 -20354444 - L1Md_A LINE L1 -2 6580 6268 5 1934 180 325 133 39 chr1 176841971 176842099 -20353333 + L2c LINE L2 3248 3387 0 5 1934 223 294 0 14 chr1 176842303 176842372 -20353060 + (CAA)n Simple_repeat Simple_repeat 2 69 0 5 1934 308 332 121 5 chr1 176843288 176843512 -20351920 - Charlie4a DNA MER1_type -229 279 30 5 1934 336 275 83 56 chr1 176843569 176843677 -20351755 + PB1D10 SINE Alu 6 116 -1 5 1934 239 260 0 20 chr1 176844115 176844217 -20351215 + GA-rich Low_complexity Low_complexity 2 101 0 5 1934 333 0 0 0 chr1 176844849 176844886 -20350546 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1934 746 269 29 18 chr1 176844896 176845066 -20350366 - B4 SINE B4 -15 277 106 5 1934 686 67 9 0 chr1 176845076 176845181 -20350251 + (TCTA)n Simple_repeat Simple_repeat 2 107 0 5 1934 184 250 0 0 chr1 176846093 176846133 -20349299 + L2c LINE L2 3340 3379 -8 5 1934 960 32 167 0 chr1 176846234 176846360 -20349072 - L1Md_A LINE L1 -2 6580 6434 5 1934 444 262 149 0 chr1 176849847 176849988 -20345444 + RSINE1 SINE B4 4 165 0 5 1934 24 32 0 0 chr1 176849995 176850026 -20345406 + AT_rich Low_complexity Low_complexity 1 31 0 5 1934 501 135 41 5 chr1 176850953 176851050 -20344382 - PB1D10 SINE Alu -7 110 15 5 1934 651 48 0 0 chr1 176852311 176852394 -20343038 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1934 24 0 0 0 chr1 176853133 176853157 -20342275 + AT_rich Low_complexity Low_complexity 1 24 0 5 1934 180 0 0 0 chr1 176854134 176854154 -20341278 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1934 894 45 0 0 chr1 176854436 176854547 -20340885 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1934 817 286 67 93 chr1 176854554 176854824 -20340608 - B4 SINE B4 -27 265 3 5 1934 5389 62 0 16 chr1 176854841 176855509 -20339923 - L1Md_F2 LINE L1 0 6582 5926 5 1934 371 209 9 0 chr1 176856516 176856626 -20338806 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1934 1712 308 19 38 chr1 176857148 176857826 -20337606 + Lx8 LINE L1 6808 7472 -1 5 1934 578 39 0 13 chr1 176858384 176858462 -20336970 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 5 1934 29 0 0 0 chr1 176860656 176860685 -20334747 + AT_rich Low_complexity Low_complexity 1 29 0 5 1934 219 301 99 47 chr1 176860745 176860916 -20334516 - B3A SINE B2 -1 197 18 5 1934 1926 188 24 59 chr1 176862421 176862795 -20332637 - ORR1B2 LTR MaLR -4 363 3 5 1934 33654 87 4 8 chr1 176863035 176868423 -20327009 + L1Md_F3 LINE L1 238 5586 -297 5 1934 7885 63 19 7 chr1 176868424 176869397 -20326035 + L1Md_F3 LINE L1 5588 6572 -12 5 1934 183 80 0 0 chr1 176869417 176869442 -20325990 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 5 1934 2184 54 8 0 chr1 176869689 176869949 -20325483 - L1Md_F2 LINE L1 -1 6581 6320 5 1934 192 77 0 0 chr1 176870096 176870122 -20325310 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1934 1440 44 0 0 chr1 176870316 176870496 -20324936 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1934 267 31 0 0 chr1 176870496 176870528 -20324904 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1934 817 228 69 28 chr1 176870556 176870804 -20324628 - MTD LTR MaLR -117 302 6 5 1934 465 103 0 0 chr1 176871006 176871074 -20324358 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1934 449 324 92 0 chr1 176871103 176871288 -20324144 - MER57D LTR ERV1 -79 332 131 5 1934 23 0 0 0 chr1 176871673 176871696 -20323736 + AT_rich Low_complexity Low_complexity 1 23 0 5 1934 5403 87 8 54 chr1 176872149 176873115 -20322317 + L1VL4 LINE L1 208 1136 -2423 5 1934 37064 39 1 3 chr1 176873118 176878576 -20316856 + L1Md_T LINE L1 49 5589 -297 5 1934 9019 34 0 0 chr1 176878576 176879572 -20315860 + L1Md_T LINE L1 5590 6585 0 5 1934 3470 72 77 6 chr1 176879575 176880093 -20315339 + L1VL4 LINE L1 1124 1678 -1881 5 1934 2458 84 3 1 chr1 176880087 176880447 -20314985 + Lx LINE L1 5549 5905 -1092 5 1934 3239 182 11 4 chr1 176880448 176880989 -20314443 + Lx LINE L1 6097 6641 -13 5 1934 342 0 0 0 chr1 176881637 176881675 -20313757 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1934 692 272 104 19 chr1 176882137 176882396 -20313036 + B4A SINE B4 1 281 -11 5 1934 441 0 0 0 chr1 176882407 176882456 -20312976 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1934 216 261 0 42 chr1 176882460 176882532 -20312900 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 1934 322 147 29 0 chr1 176883499 176883567 -20311865 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1934 349 233 0 64 chr1 176884236 176884314 -20311118 - ID4 SINE ID -10 73 1 5 1934 342 297 0 0 chr1 176884437 176884528 -20310904 - MER94 DNA AcHobo -15 119 29 5 1934 737 242 161 11 chr1 176885187 176885367 -20310065 + B3 SINE B2 1 207 -9 5 1934 947 263 9 23 chr1 176885792 176886010 -20309422 - B3 SINE B2 -1 215 1 5 1934 182 274 29 88 chr1 176886268 176886336 -20309096 - L2 LINE L2 -2889 530 467 5 1934 392 282 78 31 chr1 176886839 176886967 -20308465 - B1F SINE Alu -15 134 1 5 1934 360 148 0 0 chr1 176887111 176887172 -20308260 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1934 561 304 12 58 chr1 176887172 176887343 -20308089 - RSINE1 SINE B4 0 165 3 5 1934 231 227 64 64 chr1 176887343 176887437 -20307995 + MER33 DNA MER1_type 145 238 -86 5 1934 242 173 13 0 chr1 176887447 176887522 -20307910 + CT-rich Low_complexity Low_complexity 2 77 0 5 1934 550 48 48 0 chr1 176887525 176887609 -20307823 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 5 1934 276 111 0 0 chr1 176887613 176887658 -20307774 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1934 711 268 91 59 chr1 176887658 176887912 -20307520 - B4A SINE B4 -23 269 8 5 1934 376 179 39 0 chr1 176887916 176887994 -20307438 + MER33 DNA MER1_type 241 321 -3 5 1934 756 122 0 0 chr1 176889412 176889535 -20305897 + (TCC)n Simple_repeat Simple_repeat 3 125 0 5 1934 525 226 3 10 chr1 176891154 176891267 -20304165 - B1_Mur2 SINE Alu -9 108 1 5 1934 427 168 224 0 chr1 176891272 176891379 -20304053 - L1_Mur3 LINE L1 -1588 4292 4162 5 1934 2808 189 18 50 chr1 176891551 176892207 -20303225 + Lx2B LINE L1 6352 6986 -14 5 1934 186 133 0 0 chr1 176892217 176892247 -20303185 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1934 295 353 12 0 chr1 176892449 176892534 -20302898 + PB1D10 SINE Alu 22 107 -10 5 1934 796 264 215 16 chr1 176892782 176893098 -20302334 - MTEa LTR MaLR 0 379 1 5 1934 244 226 19 0 chr1 176894005 176894058 -20301374 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1934 264 311 18 55 chr1 176894200 176894309 -20301123 + MLT1E2 LTR MaLR 270 374 -250 5 1934 440 309 18 0 chr1 176894355 176894465 -20300967 + MLT1E2 LTR MaLR 380 491 -136 5 1934 22 0 0 0 chr1 176895923 176895945 -20299487 + AT_rich Low_complexity Low_complexity 1 22 0 5 1934 491 315 7 0 chr1 176896759 176896902 -20298530 - B1_Mur1 SINE Alu -1 148 5 5 1934 223 367 35 41 chr1 176897171 176897316 -20298116 - L2c LINE L2 -217 3170 3027 5 1934 233 367 18 18 chr1 176897787 176897898 -20297534 - MLT1K LTR MaLR -336 259 149 5 1934 577 261 106 78 chr1 176898373 176898618 -20296814 + MTC LTR MaLR 9 260 -161 5 1934 448 239 65 84 chr1 176898684 176898839 -20296593 + MTC LTR MaLR 268 419 0 5 1934 564 42 0 0 chr1 176899168 176899239 -20296193 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1934 319 49 110 0 chr1 176899255 176899337 -20296095 + GA-rich Low_complexity Low_complexity 2 92 0 5 1934 285 309 43 60 chr1 176899337 176899454 -20295978 - PB1 SINE Alu -11 116 2 5 1934 234 228 104 28 chr1 176899495 176899604 -20295828 + MLT1B LTR MaLR 79 195 -272 5 1934 270 0 0 0 chr1 176900219 176900249 -20295183 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1934 684 246 224 61 chr1 176901201 176901513 -20293919 - MTEa LTR MaLR -9 370 8 5 1934 181 375 21 74 chr1 176902437 176902532 -20292900 + L2 LINE L2 29 118 -3301 5 1934 21 0 0 0 chr1 176902986 176903007 -20292425 + AT_rich Low_complexity Low_complexity 1 21 0 5 1934 932 48 0 16 chr1 176903428 176903555 -20291877 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 5 1934 579 15 0 0 chr1 176903556 176903624 -20291808 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1934 180 111 0 0 chr1 176905458 176905485 -20289947 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1934 285 273 13 0 chr1 176905675 176905752 -20289680 + (TATG)n Simple_repeat Simple_repeat 2 79 0 6 1934 312 272 67 28 chr1 176906896 176907149 -20288283 - L1MCa LINE L1 -2758 3563 3301 6 1934 288 0 0 0 chr1 176907149 176907181 -20288251 + (CAT)n Simple_repeat Simple_repeat 2 33 0 6 1934 242 342 96 45 chr1 176907203 176907359 -20288073 - RSINE1 SINE B4 0 165 2 6 1934 604 284 43 30 chr1 176907362 176907663 -20287769 - L1MCa LINE L1 -3639 2682 2378 6 1934 7688 61 1 1 chr1 176907676 176908704 -20286728 - L1Md_T LINE L1 0 6582 5584 6 1934 234 0 0 0 chr1 176908753 176908779 -20286653 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 1934 1086 80 0 0 chr1 176908988 176909125 -20286307 + B1_Mus2 SINE Alu 2 138 -9 6 1934 370 344 60 9 chr1 176909803 176909865 -20285567 - L1MCa LINE L1 -4209 2299 2232 6 1934 394 33 0 32 chr1 176909865 176909927 -20285505 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 6 1934 370 344 60 9 chr1 176909927 176910096 -20285336 - L1MCa LINE L1 -4277 2231 2057 6 1934 647 292 0 7 chr1 176910402 176910540 -20284892 - B1_Mur1 SINE Alu -6 143 7 6 1934 868 261 144 13 chr1 176910543 176910994 -20284438 - L1MCa LINE L1 -4818 1690 1181 6 1934 357 333 41 14 chr1 176911101 176911247 -20284185 + ORR1E LTR MaLR 1 150 -209 6 1934 330 203 27 0 chr1 176911429 176911503 -20283929 + ORR1E LTR MaLR 301 376 -3 6 1934 228 278 164 8 chr1 176911547 176911681 -20283751 + MIR SINE MIR 96 250 -12 6 1934 264 205 48 12 chr1 176912559 176912643 -20282789 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 6 1934 3267 53 0 8 chr1 176912978 176913377 -20282055 + MTA_Mm LTR MaLR 1 396 0 6 1934 684 39 17 0 chr1 176913377 176913477 -20281955 + MTA_Mm-int LTR MaLR 1 112 -1146 6 1934 232 200 0 28 chr1 176914264 176914336 -20281096 + CT-rich Low_complexity Low_complexity 3 72 0 6 1934 680 284 42 24 chr1 176914367 176914580 -20280852 + ID_B1 SINE B4 2 218 -6 6 1934 435 202 12 9 chr1 176914887 176914992 -20280440 + MTC LTR MaLR 1 102 -317 6 1934 3084 210 58 5 chr1 176914992 176915652 -20279780 + Lx5 LINE L1 6352 7046 -4 6 1934 1597 156 7 42 chr1 176915713 176916000 -20279432 + MTC LTR MaLR 145 421 0 6 1934 3034 77 2 10 chr1 176916615 176917033 -20278399 + L1Md_F2 LINE L1 6168 6582 0 6 1934 260 246 17 57 chr1 176917079 176917121 -20278311 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 6 1934 197 108 0 26 chr1 176917121 176917159 -20278273 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1934 260 246 17 57 chr1 176917159 176917293 -20278139 + (TATAA)n Simple_repeat Simple_repeat 5 133 0 6 1934 7526 40 13 0 chr1 176917462 176918707 -20276725 - L1Md_F2 LINE L1 0 6582 5315 6 1934 810 340 59 0 chr1 176919369 176919625 -20275807 + B4A SINE B4 2 272 -20 6 1934 804 284 24 29 chr1 176919990 176920197 -20275235 - ID_B1 SINE B4 -17 207 2 6 1934 308 348 111 0 chr1 176920198 176920333 -20275099 - Charlie4z DNA MER1_type -6 161 12 6 1934 872 281 59 30 chr1 176920414 176920752 -20274680 - Lx8 LINE L1 -2 7471 7124 6 1934 1652 276 58 73 chr1 176920777 176921465 -20273967 - Lx8 LINE L1 -527 6946 6269 6 1934 220 250 33 0 chr1 176921546 176921606 -20273826 + PB1 SINE Alu 33 94 -33 6 1934 816 40 0 0 chr1 176921645 176921745 -20273687 + (GGGA)n Simple_repeat Simple_repeat 4 103 0 6 1934 189 257 75 75 chr1 176924052 176924132 -20271300 + L3 LINE CR1 754 833 -3656 6 1934 253 347 149 40 chr1 176924530 176924752 -20270680 - ORR1E LTR MaLR -105 254 9 6 1934 417 39 0 0 chr1 176927167 176927218 -20268214 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1934 216 170 47 65 chr1 176927473 176927580 -20267852 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 6 1934 402 359 30 89 chr1 176928138 176928340 -20267092 + B4A SINE B4 3 192 -100 6 1934 489 17 0 0 chr1 176930389 176930447 -20264985 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1934 21 36 0 0 chr1 176931463 176931491 -20263941 + AT_rich Low_complexity Low_complexity 1 28 0 6 1934 229 288 71 18 chr1 176932422 176932592 -20262840 - RMER17D2 LTR ERVK -398 411 233 6 1934 189 289 163 22 chr1 176932650 176932742 -20262690 - MIR SINE MIR -130 132 28 6 1934 358 168 18 0 chr1 176933487 176933558 -20261874 - MTD LTR MaLR -2 417 287 6 1934 613 318 118 0 chr1 176933558 176933838 -20261594 - Lx8 LINE L1 -218 7255 6943 6 1934 22 99 0 0 chr1 176934221 176934292 -20261140 + AT_rich Low_complexity Low_complexity 1 71 0 6 1934 2743 21 61 0 chr1 176936600 176936926 -20258506 + ORR1A1 LTR MaLR 1 346 0 6 1934 1365 161 5 9 chr1 176938075 176938295 -20257137 - MTC LTR MaLR -7 414 196 6 1934 183 42 0 0 chr1 176938345 176938369 -20257063 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1934 38937 16 5 1 chr1 176938372 176945534 -20249898 - L1Md_A LINE L1 -1 6581 1 6 1934 4125 66 28 4 chr1 176945524 176946057 -20249375 - L1Md_F2 LINE L1 -22 6560 6015 6 1934 3507 43 7 0 chr1 176946057 176946477 -20248955 + L1Md_F2 LINE L1 5164 5586 -297 6 241 7964 46 26 1 chr1 176946477 176947448 -20247984 + L1Md_F2 LINE L1 5587 6581 -1 6 1935 28 0 0 0 chr1 176948059 176948087 -20247345 + AT_rich Low_complexity Low_complexity 1 28 0 6 1935 209 33 0 32 chr1 176948090 176948121 -20247311 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1935 2198 118 19 0 chr1 176948207 176948530 -20246902 - ORR1A4 LTR MaLR 0 329 1 6 1935 496 256 32 13 chr1 176948535 176948689 -20246743 + RMER15 LTR ERVL 405 561 -14 6 1935 790 270 150 4 chr1 176948683 176948936 -20246496 - MTD LTR MaLR -44 375 86 6 1935 831 279 109 32 chr1 176949023 176949334 -20246098 + ORR1D2 LTR MaLR 36 370 0 6 1935 258 235 0 12 chr1 176949343 176949425 -20246007 - MER2 DNA MER2_type -111 234 154 6 1935 494 243 6 0 chr1 176949448 176949625 -20245807 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 1935 192 231 0 0 chr1 176949657 176949709 -20245723 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1935 530 72 0 24 chr1 176950011 176950096 -20245336 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 6 1935 249 255 82 36 chr1 176950097 176950207 -20245225 + Lx8 LINE L1 7357 7471 -2 6 1935 4662 64 2 0 chr1 176950209 176950785 -20244647 - L1_Mus2 LINE L1 0 6566 5990 6 1935 789 144 0 0 chr1 176951348 176951480 -20243952 + (TA)n Simple_repeat Simple_repeat 2 133 0 6 1935 2677 296 44 8 chr1 176951658 176952431 -20243001 - Lx8 LINE L1 -202 7271 6471 6 1935 915 36 0 0 chr1 176952874 176952985 -20242447 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 6 1935 252 0 0 0 chr1 176952985 176953013 -20242419 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1935 235 314 0 0 chr1 176953069 176953120 -20242312 - RSINE1 SINE B4 -105 60 10 6 1935 224 257 24 98 chr1 176953780 176953862 -20241570 + PB1D10 SINE Alu 13 88 -29 6 1935 204 67 0 0 chr1 176956751 176956781 -20238651 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1935 351 0 0 0 chr1 176956813 176956852 -20238580 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1935 636 14 0 0 chr1 176958281 176958354 -20237078 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 1935 469 82 35 35 chr1 176958354 176958468 -20236964 + GA-rich Low_complexity Low_complexity 2 115 0 6 1935 180 135 0 0 chr1 176958810 176958847 -20236585 + (CCCCCA)n Simple_repeat Simple_repeat 1 37 0 6 1935 579 29 0 0 chr1 176959554 176959623 -20235809 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1935 261 0 0 0 chr1 176959690 176959719 -20235713 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1935 372 43 0 0 chr1 176959719 176959764 -20235668 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1935 261 303 0 0 chr1 176959813 176959879 -20235553 - B3 SINE B2 -150 66 1 6 1935 252 282 25 25 chr1 176960868 176960988 -20234444 + GA-rich Low_complexity Low_complexity 6 125 0 6 1935 495 276 76 0 chr1 176961390 176961535 -20233897 - B4A SINE B4 -44 248 93 6 1935 180 111 0 0 chr1 176961896 176961923 -20233509 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1935 222 222 22 0 chr1 176962061 176962106 -20233326 + GA-rich Low_complexity Low_complexity 2 47 0 6 1935 627 51 0 0 chr1 176963259 176963338 -20232094 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1935 364 326 106 12 chr1 176963412 176963732 -20231700 + MLT1A0 LTR MaLR 3 352 -13 6 1935 231 301 17 67 chr1 176964417 176964595 -20230837 - L1M5 LINE L1 -2121 4025 3857 6 1935 231 273 0 15 chr1 176965185 176965252 -20230180 + GA-rich Low_complexity Low_complexity 3 68 0 6 1935 789 197 27 0 chr1 176966259 176966442 -20228990 + MER121 Unknown Unknown 37 224 -188 6 1935 345 100 0 0 chr1 176966809 176966859 -20228573 + (CCA)n Simple_repeat Simple_repeat 1 50 0 6 1935 1398 238 83 86 chr1 176967252 176967559 -20227873 - RMER20A LTR ERVK -396 464 191 6 1935 2209 58 24 13 chr1 176967559 176967857 -20227575 - L1_Mus2 LINE L1 -4 6562 6262 6 1935 1398 193 42 115 chr1 176967857 176968096 -20227336 - RMER20A LTR ERVK -308 208 1 6 1935 333 0 0 0 chr1 176968494 176968531 -20226901 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1935 535 312 0 0 chr1 176968558 176968696 -20226736 - B4 SINE B4 -34 258 121 6 1935 576 256 0 28 chr1 176969212 176969353 -20226079 + B3A SINE B2 1 137 -61 6 1935 441 0 0 0 chr1 176969354 176969403 -20226029 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1935 225 0 0 0 chr1 176970795 176970820 -20224612 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 1935 435 163 11 11 chr1 176970998 176971091 -20224341 + Lx9 LINE L1 7519 7611 -33 6 1935 1230 41 0 0 chr1 176971116 176971262 -20224170 + B1_Mus2 SINE Alu 2 147 0 6 1935 288 0 0 0 chr1 176971262 176971294 -20224138 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1935 333 0 0 0 chr1 176971820 176971857 -20223575 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1935 2842 48 0 0 chr1 176972132 176972469 -20222963 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1935 21083 16 1 2 chr1 176972469 176974799 -20220633 - IAPEz-int LTR ERVK 0 6481 4154 6 1935 28083 28 28 12 chr1 176974789 176978080 -20217352 - IAPEz-int LTR ERVK -3131 3350 8 6 1935 2842 48 0 0 chr1 176978080 176978417 -20217015 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1935 1897 135 33 12 chr1 176980090 176980324 -20215108 - RMER4B LTR ERVK 0 585 342 6 1935 3051 70 12 22 chr1 176980324 176980731 -20214701 + MTB_Mm LTR MaLR 1 403 -4 6 1935 1897 135 33 12 chr1 176980731 176980825 -20214607 - RMER4B LTR ERVK -244 341 251 6 1935 222 37 0 0 chr1 176981954 176981981 -20213451 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1935 598 290 0 6 chr1 176981986 176982149 -20213283 - B3A SINE B2 -35 163 2 6 1935 225 241 0 0 chr1 176982188 176982246 -20213186 + CT-rich Low_complexity Low_complexity 2 59 0 7 1935 770 250 64 15 chr1 176982315 176982518 -20212914 - B3 SINE B2 0 216 4 7 1935 676 269 54 18 chr1 176982564 176982787 -20212645 + Lx8 LINE L1 7242 7472 -1 7 1935 237 310 70 17 chr1 176983393 176983508 -20211924 - RMER5 LTR ERV1 -209 325 205 7 1935 295 253 22 33 chr1 176983480 176983570 -20211862 + MTD LTR MaLR 329 417 -2 7 1935 268 225 73 24 chr1 176984912 176984994 -20210438 - MIRb SINE MIR -32 236 151 7 1935 222 241 0 0 chr1 176986233 176986320 -20209112 + CT-rich Low_complexity Low_complexity 1 87 0 7 1935 1104 111 0 0 chr1 176986324 176986495 -20208937 + (TC)n Simple_repeat Simple_repeat 2 172 0 7 1935 223 343 40 79 chr1 176986505 176986657 -20208775 - RSINE1 SINE B4 -18 147 2 7 1935 1110 205 10 0 chr1 176987544 176987749 -20207683 - B3 SINE B2 -8 208 2 7 1935 353 293 68 8 chr1 176987802 176987919 -20207513 - RSINE1 SINE B4 -26 139 16 7 1935 239 352 94 6 chr1 176987927 176988087 -20207345 + MER34 LTR ERV1 53 226 -316 7 1935 587 326 35 83 chr1 176988402 176988690 -20206742 + ORR1E LTR MaLR 7 280 -79 7 1935 233 269 0 56 chr1 176990049 176990120 -20205312 - tRNA-Ala-GCY_ tRNA tRNA 0 75 9 7 1935 60 0 0 0 chr1 176990935 176990995 -20204437 + AT_rich Low_complexity Low_complexity 1 60 0 7 1935 637 275 16 64 chr1 176991217 176991466 -20203966 - MLT1A0 LTR MaLR -127 238 2 7 1935 585 230 102 17 chr1 176991789 176991966 -20203466 + MLT1A0 LTR MaLR 172 363 -2 7 1935 189 0 0 0 chr1 176992065 176992086 -20203346 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1935 500 248 14 28 chr1 176993931 176994076 -20201356 - ID_B1 SINE B4 0 224 82 7 1935 284 318 0 12 chr1 176996339 176996425 -20199007 - PB1D10 SINE Alu -8 109 25 7 1935 264 295 163 29 chr1 176997493 176997769 -20197663 - Tigger13a DNA MER2_type -378 393 81 7 1935 207 371 53 12 chr1 176997801 176997970 -20197462 + MER5A DNA MER1_type 1 176 -13 7 1935 327 25 0 0 chr1 176998635 176998675 -20196757 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1935 311 338 0 0 chr1 177001488 177001562 -20193870 - ID2 SINE ID -4 79 6 1 1935 333 299 18 18 chr1 177002603 177002712 -20192720 + PB1D10 SINE Alu 1 109 -8 2 1935 371 21 0 20 chr1 177004885 177004934 -20190498 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1935 717 87 0 0 chr1 177004934 177005048 -20190384 + (GA)n Simple_repeat Simple_repeat 1 115 0 4 1935 30 0 0 0 chr1 177006312 177006342 -20189090 + AT_rich Low_complexity Low_complexity 1 30 0 5 1935 294 16 95 0 chr1 177008636 177008699 -20186733 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1935 22 0 0 0 chr1 177009363 177009385 -20186047 + AT_rich Low_complexity Low_complexity 1 22 0 7 1935 457 273 0 0 chr1 177009910 177010009 -20185423 - ID_B1 SINE B4 -8 216 118 8 1935 185 333 75 19 chr1 177010642 177010749 -20184683 + MIRm SINE MIR 47 159 -117 9 1935 182 37 0 36 chr1 177011497 177011525 -20183907 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 1 1935 23 0 0 0 chr1 177011575 177011598 -20183834 + AT_rich Low_complexity Low_complexity 1 23 0 1 1935 219 157 43 0 chr1 177011600 177011670 -20183762 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1935 421 129 60 24 chr1 177011682 177011849 -20183583 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1935 619 275 7 13 chr1 177012029 177012180 -20183252 - B4 SINE B4 -141 151 2 1 1935 307 221 21 10 chr1 177012604 177012700 -20182732 + GA-rich Low_complexity Low_complexity 6 102 0 1 1935 576 0 0 0 chr1 177013522 177013586 -20181846 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1935 332 262 126 38 chr1 177013648 177013807 -20181625 + MTEa LTR MaLR 205 379 0 1 1935 550 280 64 0 chr1 177014302 177014427 -20181005 - B1_Mur1 SINE Alu -14 135 3 1 1935 227 295 182 28 chr1 177014607 177014750 -20180682 - MIR SINE MIR -87 175 11 1 1935 386 224 9 0 chr1 177014927 177015043 -20180389 + (TA)n Simple_repeat Simple_repeat 1 117 0 1 1935 498 337 22 29 chr1 177015108 177015128 -20180304 + ID_B1 SINE B4 67 150 -142 2 1935 377 295 54 54 chr1 177015128 177015275 -20180157 + B1F SINE Alu 3 149 0 2 1935 498 337 22 29 chr1 177015275 177015296 -20180136 + ID_B1 SINE B4 151 250 -42 2 1935 377 311 68 0 chr1 177015750 177016050 -20179382 - L1MA6 LINE L1 -172 6128 5805 2 1935 339 58 28 42 chr1 177016757 177016829 -20178603 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 2 1935 9520 31 0 0 chr1 177017346 177019183 -20176249 - L1Md_T LINE L1 0 6582 4746 2 1935 909 161 155 5 chr1 177019315 177019502 -20175930 + B3 SINE B2 2 216 0 2 1935 207 268 0 0 chr1 177020736 177020777 -20174655 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1935 242 351 0 51 chr1 177020777 177020855 -20174577 - ID SINE ID -145 79 6 2 1935 285 234 90 36 chr1 177020870 177020981 -20174451 - PB1D10 SINE Alu 0 117 1 2 1935 299 237 0 26 chr1 177020912 177020989 -20174443 - B4A SINE B4 -74 150 80 2 1935 549 76 0 0 chr1 177021437 177021516 -20173916 + (TC)n Simple_repeat Simple_repeat 2 80 0 3 1935 432 0 0 0 chr1 177021516 177021564 -20173868 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1935 189 0 0 0 chr1 177022182 177022203 -20173229 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1935 468 0 0 0 chr1 177022496 177022548 -20172884 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1935 637 272 115 0 chr1 177022585 177022776 -20172656 + ID_B1 SINE B4 1 213 -11 3 1935 1013 294 50 5 chr1 177022782 177023158 -20172274 - Lx8 LINE L1 -234 7239 6847 3 1935 419 327 48 29 chr1 177023619 177023827 -20171605 + RMER15 LTR ERVL 347 558 -17 3 1935 517 269 7 34 chr1 177025408 177025554 -20169878 + RSINE1 SINE B4 2 143 -22 3 1935 471 48 0 0 chr1 177025580 177025642 -20169790 + (CTCA)n Simple_repeat Simple_repeat 1 62 0 3 1935 467 78 0 0 chr1 177025806 177025870 -20169562 - L1_Mus2 LINE L1 -251 6316 6253 3 1935 2012 50 4 15 chr1 177025870 177026133 -20169299 + L1_Mus2 LINE L1 6305 6564 -2 3 1935 651 279 68 29 chr1 177026620 177026827 -20168605 + B3A SINE B2 1 215 -1 4 1935 79 37 0 0 chr1 177026848 177026955 -20168477 + AT_rich Low_complexity Low_complexity 1 107 0 4 1935 306 0 0 0 chr1 177028390 177028424 -20167008 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1935 258 95 0 0 chr1 177028424 177028466 -20166966 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1935 692 301 69 29 chr1 177028538 177028812 -20166620 + B4A SINE B4 8 292 0 4 1935 267 340 13 0 chr1 177029459 177029547 -20165885 - ID2 SINE ID -59 93 5 4 1935 813 280 66 9 chr1 177029706 177030041 -20165391 + L1MC1 LINE L1 5966 6319 -14 4 1935 246 296 127 0 chr1 177030081 177030152 -20165280 + PB1D10 SINE Alu 1 80 -37 4 1935 1625 256 78 15 chr1 177030994 177031112 -20164320 + RMER20A LTR ERVK 11 140 -376 4 1935 780 11 0 0 chr1 177031112 177031201 -20164231 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1935 585 0 0 0 chr1 177031201 177031265 -20164167 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1935 1625 256 78 15 chr1 177031265 177031621 -20163811 + RMER20A LTR ERVK 141 515 -1 4 1935 1846 178 113 8 chr1 177031980 177032343 -20163089 + MTC LTR MaLR 1 401 -20 5 1935 929 286 69 61 chr1 177032667 177033043 -20162389 + MTE2a LTR MaLR 1 379 0 5 1935 315 65 0 0 chr1 177033667 177033713 -20161719 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1935 602 281 12 24 chr1 177036015 177036179 -20159253 - RSINE1 SINE B4 0 165 4 5 1935 234 0 0 0 chr1 177036613 177036639 -20158793 + (TCC)n Simple_repeat Simple_repeat 3 28 0 5 1935 230 191 40 50 chr1 177036753 177036852 -20158580 + ID4 SINE ID 5 104 -48 5 1935 444 312 40 40 chr1 177037121 177037298 -20158134 + MLT1F1 LTR MaLR 383 559 -10 5 1935 198 103 0 0 chr1 177037396 177037425 -20158007 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1935 1117 79 0 0 chr1 177037437 177037576 -20157856 - B1_Mus2 SINE Alu -8 139 1 5 1935 656 306 38 148 chr1 177037681 177037706 -20157726 + B4A SINE B4 1 23 -269 6 1935 666 319 41 67 chr1 177037706 177038095 -20157337 - MTE2b LTR MaLR 0 379 1 6 1935 656 306 38 148 chr1 177038095 177038387 -20157045 + B4A SINE B4 24 283 -9 6 1935 270 56 0 0 chr1 177038433 177038469 -20156963 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1935 234 0 0 0 chr1 177038469 177038495 -20156937 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 6 1935 202 325 94 16 chr1 177038531 177038659 -20156773 - MIRb SINE MIR -8 260 123 6 1935 265 237 39 49 chr1 177038978 177039080 -20156352 + CT-rich Low_complexity Low_complexity 1 101 0 6 1935 304 240 1 0 chr1 177039100 177039179 -20156253 - PB1D10 SINE Alu -68 80 1 6 1935 558 0 0 0 chr1 177040207 177040269 -20155163 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1935 27 29 0 0 chr1 177040380 177040414 -20155018 + AT_rich Low_complexity Low_complexity 1 34 0 6 1935 431 182 13 0 chr1 177040462 177040539 -20154893 + ID4_ SINE ID 4 81 -2 6 1935 209 33 33 0 chr1 177040881 177040911 -20154521 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1935 1083 63 28 0 chr1 177040916 177041058 -20154374 - B1_Mm SINE Alu -1 146 1 7 1935 34 65 0 0 chr1 177041396 177041458 -20153974 + AT_rich Low_complexity Low_complexity 1 62 0 7 1935 22 0 0 0 chr1 177041591 177041613 -20153819 + AT_rich Low_complexity Low_complexity 1 22 0 7 1935 637 274 113 0 chr1 177041613 177041799 -20153633 - ID_B1 SINE B4 -7 217 11 7 1935 441 269 43 50 chr1 177041852 177041993 -20153439 + B1_Mur1 SINE Alu 5 144 -5 7 1935 4229 174 20 0 chr1 177042445 177043242 -20152190 + Lx4A LINE L1 428 1240 -5846 7 1935 21845 119 39 25 chr1 177043237 177043363 -20152069 + Lx4A LINE L1 1889 2047 -3830 7 1935 564 15 0 0 chr1 177043363 177043428 -20152004 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1935 21845 125 41 20 chr1 177043428 177048347 -20147085 + Lx4A LINE L1 2048 7056 -2 7 1935 394 160 33 83 chr1 177048388 177048481 -20146951 + BC1_Mm scRNA scRNA 1 87 -65 7 1935 536 249 102 0 chr1 177048759 177048979 -20146453 + L1MB7 LINE L1 5658 5897 -281 7 1935 412 310 51 56 chr1 177049012 177049207 -20146225 - RMER30 DNA MER1_type -1 201 8 8 1935 514 297 123 26 chr1 177049445 177049703 -20145729 + ORR1E LTR MaLR 20 326 -53 8 1935 2347 44 13 3 chr1 177049783 177050081 -20145351 + L1Md_F2 LINE L1 6279 6579 -3 8 1935 1243 118 0 24 chr1 177050111 177050319 -20145113 + L1Md_F2 LINE L1 6379 6581 -1 8 1935 461 17 17 0 chr1 177050772 177050830 -20144602 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1935 385 272 51 134 chr1 177050835 177050992 -20144440 - B3A SINE B2 -51 144 1 8 1935 355 239 45 18 chr1 177050995 177051106 -20144326 - PB1D10 SINE Alu -1 116 3 8 1935 523 286 30 25 chr1 177052214 177052415 -20143017 - ID_B1 SINE B4 -18 206 5 8 1935 6906 111 4 5 chr1 177053607 177054715 -20140717 + Lx4B LINE L1 4550 5656 -1402 8 1935 570 29 0 0 chr1 177055265 177055333 -20140099 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1935 294 347 0 0 chr1 177055335 177055407 -20140025 - ID4 SINE ID -11 72 1 9 1935 771 197 157 0 chr1 177056221 177056399 -20139033 + URR1A DNA MER1_type 1 206 -20 9 1935 468 0 0 0 chr1 177057103 177057155 -20138277 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1935 26 74 0 0 chr1 177057395 177057449 -20137983 + AT_rich Low_complexity Low_complexity 1 54 0 9 1935 729 190 0 40 chr1 177057601 177057749 -20137683 - B1_Mur1 SINE Alu -7 142 1 9 1935 913 209 55 30 chr1 177057852 177058054 -20137378 - B3 SINE B2 -9 207 1 9 1935 732 286 75 23 chr1 177059356 177059621 -20135811 + B4A SINE B4 6 284 -8 9 1935 360 0 0 0 chr1 177059660 177059700 -20135732 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1935 582 260 16 0 chr1 177059906 177060033 -20135399 + RSINE1 SINE B4 5 133 -32 9 1935 1452 153 222 7 chr1 177060151 177060453 -20134979 + ORR1B2 LTR MaLR 1 367 0 9 1935 342 286 0 12 chr1 177061209 177061294 -20134138 - ID_B1 SINE B4 -20 204 121 1 1935 522 0 0 0 chr1 177061391 177061449 -20133983 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1935 211 194 0 0 chr1 177061547 177061583 -20133849 + CT-rich Low_complexity Low_complexity 1 36 0 1 1935 794 245 108 24 chr1 177062374 177062587 -20132845 - ORR1D1 LTR MaLR -120 254 24 1 1935 2681 153 77 4 chr1 177062625 177063117 -20132315 + RLTR11A LTR ERVK 1 528 0 1 1935 4088 79 7 0 chr1 177063388 177063930 -20131502 + L1_Mus3 LINE L1 6086 6631 -7 1 1935 368 341 103 26 chr1 177064511 177064782 -20130650 + Charlie20a DNA Charlie 357 648 -159 1 1935 297 313 77 67 chr1 177065350 177065545 -20129887 + MIRb SINE MIR 14 210 -58 1 1935 1217 41 0 0 chr1 177065622 177065769 -20129663 + B1_Mus2 SINE Alu 1 147 0 1 1935 25 0 0 0 chr1 177066695 177066720 -20128712 + AT_rich Low_complexity Low_complexity 1 25 0 1 1935 25 51 0 0 chr1 177066793 177066832 -20128600 + AT_rich Low_complexity Low_complexity 1 39 0 1 1935 476 303 109 72 chr1 177067770 177068175 -20127257 + L1MCa LINE L1 263 682 -6069 1 1935 359 157 22 67 chr1 177068476 177068565 -20126867 - Lx4B LINE L1 -827 6231 6147 1 1935 4200 174 59 11 chr1 177068569 177069328 -20126104 + Lx5 LINE L1 6212 7007 -43 1 1935 3440 23 5 0 chr1 177069331 177069725 -20125707 + MTA_Mm LTR MaLR 1 396 0 1 1935 8172 62 9 5 chr1 177069725 177070106 -20125326 + MTA_Mm-int LTR MaLR 1 381 -717 1 1935 4605 49 2 3 chr1 177070106 177070679 -20124753 + L1Md_F2 LINE L1 6011 6582 0 1 1935 8172 62 9 5 chr1 177070679 177071390 -20124042 + MTA_Mm-int LTR MaLR 382 1098 0 1 1935 3437 23 5 0 chr1 177071390 177071784 -20123648 + MTA_Mm LTR MaLR 1 396 0 1 1935 396 167 0 0 chr1 177071875 177071947 -20123485 + GA-rich Low_complexity Low_complexity 1 72 0 1 1935 243 315 77 48 chr1 177071948 177072155 -20123277 + L1MCa LINE L1 761 973 -5072 1 1935 399 118 0 0 chr1 177072330 177072406 -20123026 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 1 1935 21 0 0 0 chr1 177072514 177072535 -20122897 + AT_rich Low_complexity Low_complexity 1 21 0 1 1935 2187 45 0 0 chr1 177072594 177072858 -20122574 + L1_Mus1 LINE L1 6303 6566 -1 1 1935 21 71 0 0 chr1 177072859 177072901 -20122531 + AT_rich Low_complexity Low_complexity 1 42 0 1 1935 554 302 115 73 chr1 177073069 177073426 -20122006 + MLT1B LTR MaLR 19 390 0 1 1935 496 297 33 28 chr1 177073615 177073830 -20121602 - L1MC2 LINE L1 -125 6219 6004 1 1935 2077 154 78 6 chr1 177073856 177074214 -20121218 + ORR1C2 LTR MaLR 1 384 0 1 1935 247 188 0 0 chr1 177074304 177074352 -20121080 - L1MC LINE L1 -2791 3355 3308 1 1935 272 198 103 10 chr1 177075537 177075634 -20119798 + MER96B DNA hAT 72 177 -240 1 1935 231 338 39 0 chr1 177075720 177075797 -20119635 + B1F2 SINE Alu 1 80 -69 1 1935 288 311 75 28 chr1 177076415 177076521 -20118911 + PB1D10 SINE Alu 9 119 -1 1 1935 833 202 0 25 chr1 177077864 177077983 -20117449 + MTC LTR MaLR 2 118 -303 1 1935 1550 85 36 0 chr1 177077983 177078207 -20117225 - L1_Mus3 LINE L1 -10 6628 6397 1 241 833 249 397 19 chr1 177078207 177078421 -20117011 + MTC LTR MaLR 119 413 -8 1 1936 1423 263 14 16 chr1 177078447 177078818 -20116614 + ORR1D1 LTR MaLR 3 372 -2 1 1936 200 93 0 44 chr1 177079718 177079763 -20115669 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1936 279 0 0 0 chr1 177081257 177081288 -20114144 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1936 180 111 0 0 chr1 177082612 177082639 -20112793 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1936 261 246 0 0 chr1 177083551 177083669 -20111763 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1936 522 104 0 40 chr1 177084495 177084595 -20110837 + L1Md_F2 LINE L1 6475 6570 -12 1 1936 25 0 0 0 chr1 177086493 177086518 -20108914 + AT_rich Low_complexity Low_complexity 1 25 0 1 1936 469 337 113 8 chr1 177087096 177087344 -20108088 + B4A SINE B4 1 274 -18 1 1936 459 0 0 0 chr1 177087907 177087958 -20107474 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1936 468 0 0 0 chr1 177088121 177088173 -20107259 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1936 344 248 151 17 chr1 177088187 177088306 -20107126 - B1F1 SINE Alu -4 145 11 1 1936 3475 52 14 5 chr1 177088658 177089104 -20106328 + L1Md_F2 LINE L1 6131 6580 -2 1 1936 328 155 0 17 chr1 177089256 177089315 -20106117 + HAL1-3A_ME LINE L1 1974 2031 -827 1 1936 197 264 57 0 chr1 177089673 177089726 -20105706 - MIRb SINE MIR -34 234 179 1 1936 188 250 203 17 chr1 177091187 177091305 -20104127 - MIRb SINE MIR -63 205 66 1 1936 1176 147 107 5 chr1 177091813 177092018 -20103414 - URR1A DNA MER1_type 0 226 1 1 1936 45 0 0 0 chr1 177092095 177092140 -20103292 + AT_rich Low_complexity Low_complexity 1 45 0 1 1936 666 296 0 36 chr1 177092863 177093056 -20102376 - RCHARR1 DNA MER1_type -788 186 1 1 1936 310 326 97 22 chr1 177094068 177094253 -20101179 + L1MCa LINE L1 210 408 -5637 1 1936 612 260 0 16 chr1 177094271 177094400 -20101032 - B1_Mus2 SINE Alu -20 127 1 1 1936 458 285 67 53 chr1 177095038 177095472 -20099960 + L1MCa LINE L1 1178 1617 -5134 1 1936 403 285 58 37 chr1 177095822 177096022 -20099410 + L1MCa LINE L1 1940 2210 -4435 1 1936 1083 127 101 24 chr1 177096022 177096231 -20099201 + URR1B DNA MER1_type 1 225 0 1 1936 311 324 85 57 chr1 177096231 177096400 -20099032 + L1MCa LINE L1 2211 2381 -4264 1 1936 1048 128 6 6 chr1 177096653 177096833 -20098599 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1936 383 167 0 15 chr1 177096848 177096915 -20098517 + ORR1C1 LTR MaLR 313 378 0 1 1936 1447 269 146 41 chr1 177097057 177098278 -20097154 + L1MCa LINE L1 2826 4174 -2390 1 1936 459 321 93 43 chr1 177098312 177098569 -20096863 + B4 SINE B4 5 274 -18 1 1936 696 24 0 0 chr1 177098571 177098653 -20096779 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1936 225 268 0 0 chr1 177098711 177098767 -20096665 + L1MCa LINE L1 4220 4275 -2289 1 1936 344 250 66 59 chr1 177098965 177099101 -20096331 - L1M2 LINE L1 -646 5654 5518 1 1936 271 270 69 125 chr1 177099217 177099361 -20096071 + PB1D10 SINE Alu 4 139 -10 1 1936 390 101 0 0 chr1 177101330 177101399 -20094033 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1936 564 42 0 0 chr1 177101404 177101475 -20093957 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1936 1275 62 84 11 chr1 177101707 177101885 -20093547 + B2_Mm1t SINE B2 2 192 -1 1 1936 208 233 0 0 chr1 177102361 177102404 -20093028 + (CCA)n Simple_repeat Simple_repeat 3 45 0 1 1936 831 304 35 4 chr1 177102760 177103021 -20092411 - MER2 DNA MER2_type -3 342 74 1 1936 843 188 216 0 chr1 177103031 177103207 -20092225 - B3 SINE B2 0 216 3 1 1936 242 303 22 0 chr1 177103395 177103484 -20091948 - L2 LINE L2 -936 2483 2393 1 1936 243 0 0 0 chr1 177105039 177105066 -20090366 + (ATG)n Simple_repeat Simple_repeat 1 27 0 1 1936 1282 14 0 0 chr1 177106206 177106353 -20089079 - B1_Mm SINE Alu 0 147 1 1 1936 424 195 10 147 chr1 177107234 177107432 -20088000 - Lx2B LINE L1 -3 6997 6827 1 1936 314 23 23 0 chr1 177107681 177107724 -20087708 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1936 192 40 0 0 chr1 177107732 177107757 -20087675 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1936 234 274 0 0 chr1 177108869 177108920 -20086512 - HAL1 LINE L1 -1697 810 760 1 1936 481 226 60 30 chr1 177109167 177109368 -20086064 + L1MA9 LINE L1 6106 6312 0 1 1936 1358 177 47 200 chr1 177109846 177110054 -20085378 + ORR1C2 LTR MaLR 1 170 -214 1 1936 624 50 0 0 chr1 177110054 177110134 -20085298 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1936 1358 177 47 200 chr1 177110134 177110376 -20085056 + ORR1C2 LTR MaLR 171 382 -2 1 1936 513 272 152 61 chr1 177110497 177110728 -20084704 - B4A SINE B4 -40 252 1 1 1936 224 167 21 0 chr1 177111125 177111173 -20084259 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 1936 1320 23 12 12 chr1 177111183 177111356 -20084076 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 1 1936 208 267 0 0 chr1 177111356 177111401 -20084031 + GA-rich Low_complexity Low_complexity 4 48 0 1 1936 647 300 95 54 chr1 177111461 177111778 -20083654 + MLT1A0 LTR MaLR 10 339 -26 1 1936 357 298 43 0 chr1 177111996 177112090 -20083342 + MTE2b LTR MaLR 1 98 -281 1 1936 1148 289 37 7 chr1 177112092 177112388 -20083044 + MTE2b LTR MaLR 60 364 -15 1 1936 198 324 95 34 chr1 177113072 177113219 -20082213 + MIRc SINE MIR 85 240 -28 1 1936 458 298 70 7 chr1 177113714 177113856 -20081576 - RSINE1 SINE B4 0 165 15 1 1936 195 129 0 0 chr1 177114828 177114859 -20080573 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1936 235 0 0 54 chr1 177115224 177115261 -20080171 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1936 1429 244 24 27 chr1 177116358 177116733 -20078699 + ORR1D1 LTR MaLR 1 374 0 1 1936 2246 160 19 0 chr1 177116738 177117114 -20078318 + ORR1B1 LTR MaLR 1 383 -11 1 1936 239 136 0 0 chr1 177117125 177117169 -20078263 + ORR1B1 LTR MaLR 351 394 0 1 1936 567 78 0 0 chr1 177118785 177118862 -20076570 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1936 1421 264 54 15 chr1 177120012 177120355 -20075077 + Lx6 LINE L1 7011 7351 -109 1 1936 621 0 0 0 chr1 177120355 177120424 -20075008 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1936 1421 264 54 15 chr1 177120424 177120487 -20074945 + Lx6 LINE L1 7352 7432 -28 1 1936 4064 251 44 81 chr1 177120613 177121766 -20073666 + MYSERV16_I-int LTR ERVK 255 1366 -960 1 1936 2303 86 75 40 chr1 177121766 177122140 -20073292 + Lx LINE L1 6258 6644 -10 1 1936 4064 251 44 81 chr1 177122140 177123060 -20072372 + MYSERV16_I-int LTR ERVK 1367 2251 -75 1 1936 1721 164 32 72 chr1 177123116 177123490 -20071942 + RLTR15 LTR ERVK 1 359 0 1 1936 630 0 0 0 chr1 177123756 177123826 -20071606 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1936 1369 243 32 0 chr1 177123826 177123989 -20071443 + L1_Mur3 LINE L1 3661 3825 -2055 1 1936 1301 78 41 10 chr1 177123989 177124184 -20071248 + L1Md_F2 LINE L1 6379 6579 -3 1 1936 1369 243 32 0 chr1 177124184 177124366 -20071066 + L1_Mur3 LINE L1 3826 4016 -1864 1 1936 376 350 80 31 chr1 177124367 177124653 -20070779 + Lx8 LINE L1 6832 7131 -342 1 1936 390 317 53 53 chr1 177125248 177125418 -20070014 + B4A SINE B4 2 171 -121 1 1936 1235 48 0 0 chr1 177125499 177125646 -20069786 + B1_Mus2 SINE Alu 1 147 0 1 1936 206 118 0 0 chr1 177125648 177125682 -20069750 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1936 309 281 62 40 chr1 177125956 177126136 -20069296 + Lx8 LINE L1 5773 5960 -1684 1 1936 366 322 73 19 chr1 177126234 177126440 -20068992 - L1MC LINE L1 -3642 2504 2288 1 1936 223 250 21 0 chr1 177126881 177126929 -20068503 + (ATGGTG)n Simple_repeat Simple_repeat 6 54 0 1 1936 264 59 0 0 chr1 177127779 177127813 -20067619 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1936 339 333 39 0 chr1 177128150 177128252 -20067180 + PB1D10 SINE Alu 9 114 -3 2 1936 1552 169 89 157 chr1 177129629 177130099 -20065333 + RMER4A LTR ERVK 18 455 -11 2 1936 1055 294 98 6 chr1 177131634 177131949 -20063483 + MTE-int LTR MaLR 177 520 -1060 2 1936 757 132 7 13 chr1 177132327 177132481 -20062951 - L1_Mus4 LINE L1 -2 6634 6482 2 1936 444 117 0 0 chr1 177133629 177133706 -20061726 + (TGG)n Simple_repeat Simple_repeat 3 79 0 2 1936 354 280 67 56 chr1 177133717 177134014 -20061418 + RMER15 LTR ERVL 1 421 -154 2 1936 525 32 0 0 chr1 177134161 177134224 -20061208 + (TTA)n Simple_repeat Simple_repeat 1 63 0 2 1936 699 12 0 0 chr1 177135692 177135772 -20059660 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1936 253 386 14 7 chr1 177135864 177136005 -20059427 + MER67C LTR ERV1 265 406 -305 2 1936 238 353 125 10 chr1 177136173 177136284 -20059148 - MIR SINE MIR -118 150 26 2 1936 400 311 73 6 chr1 177136284 177136299 -20059133 - B3A SINE B2 -6 192 178 2 1936 495 0 0 0 chr1 177136299 177136354 -20059078 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1936 400 311 73 6 chr1 177136354 177136516 -20058916 - B3A SINE B2 -21 177 4 2 1936 184 403 119 16 chr1 177136516 177136530 -20058902 - MIRb SINE MIR -243 25 12 2 1936 247 328 61 9 chr1 177138610 177138724 -20056708 - L2a LINE L2 -20 3406 3287 2 1936 219 320 0 0 chr1 177139120 177139170 -20056262 + RSINE1 SINE B4 2 51 -114 2 1936 293 266 13 0 chr1 177139689 177139768 -20055664 + GA-rich Low_complexity Low_complexity 1 80 0 2 1936 210 265 14 29 chr1 177140862 177140932 -20054500 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 2 1936 377 329 89 62 chr1 177140949 177141208 -20054224 + MER2 DNA MER2_type 21 286 -59 2 1936 312 27 0 0 chr1 177141224 177141261 -20054171 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1936 259 316 13 13 chr1 177142190 177142267 -20053165 - PB1D10 SINE Alu -32 85 9 2 1936 556 353 40 12 chr1 177143558 177143810 -20051622 + B4A SINE B4 2 260 -32 2 1936 294 258 38 94 chr1 177143944 177144110 -20051322 - B4 SINE B4 -150 142 1 2 1936 355 275 31 56 chr1 177144329 177144491 -20050941 + HAL1-2a_MD LINE L1 2345 2502 -522 2 1936 283 228 0 17 chr1 177144546 177144604 -20050828 - PB1 SINE Alu -26 101 45 2 1936 607 361 37 52 chr1 177144812 177145218 -20050214 + MLT1J1-int LTR MaLR 988 1387 0 2 1936 300 374 32 19 chr1 177145218 177145376 -20050056 + MLT1J1 LTR MaLR 1 160 -284 2 1936 261 311 0 0 chr1 177145582 177145656 -20049776 - ID4_ SINE ID -9 74 1 2 1936 313 206 166 3 chr1 177145674 177145770 -20049662 - PB1D10 SINE Alu -10 110 1 2 1936 22 0 0 0 chr1 177145982 177146004 -20049428 + AT_rich Low_complexity Low_complexity 1 22 0 2 1936 256 390 31 62 chr1 177146560 177146754 -20048678 - MIR SINE MIR -48 214 27 2 1936 203 339 30 48 chr1 177146854 177146968 -20048464 - L2b LINE L2 -16 3371 3268 2 1936 783 216 38 33 chr1 177147084 177147295 -20048137 + B3 SINE B2 1 212 -4 2 1936 232 246 35 17 chr1 177148011 177148069 -20047363 + RSINE1 SINE B4 82 140 -25 2 1936 701 142 28 28 chr1 177148088 177148413 -20047019 + CT-rich Low_complexity Low_complexity 1 325 0 2 1936 722 168 0 27 chr1 177148438 177148622 -20046810 + CT-rich Low_complexity Low_complexity 2 180 0 2 1936 342 300 23 8 chr1 177148649 177148780 -20046652 + GA-rich Low_complexity Low_complexity 3 135 0 2 1936 594 300 97 26 chr1 177148787 177149054 -20046378 + MER2 DNA MER2_type 60 345 0 2 1936 387 0 0 0 chr1 177149530 177149573 -20045859 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1936 615 370 21 49 chr1 177149594 177149878 -20045554 - B4A SINE B4 -9 283 8 2 1936 187 294 75 38 chr1 177150234 177150340 -20045092 + L2 LINE L2 2649 2758 -661 2 1936 297 372 14 35 chr1 177150554 177150696 -20044736 + B1F1 SINE Alu 10 148 -1 2 1936 25 31 0 0 chr1 177150781 177150813 -20044619 + AT_rich Low_complexity Low_complexity 1 32 0 2 1936 1389 337 72 29 chr1 177150834 177151485 -20043947 - MER21B LTR ERV1 -150 713 35 2 1936 288 0 0 0 chr1 177151500 177151532 -20043900 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1936 523 286 0 52 chr1 177152703 177152848 -20042584 + B1_Mur1 SINE Alu 1 138 -11 2 1936 270 0 0 0 chr1 177152848 177152878 -20042554 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1936 2564 154 72 2 chr1 177153083 177153526 -20041906 - Lx4A LINE L1 -1 7057 6584 2 1936 4664 9 0 0 chr1 177153526 177154078 -20041354 - L1Md_A LINE L1 -546 5337 4786 2 1936 1912 36 4 12 chr1 177154077 177154302 -20041130 + L1Md_A LINE L1 5362 5586 -297 2 1936 8709 16 1 1 chr1 177154302 177155298 -20040134 + L1Md_A LINE L1 5587 6582 0 2 1936 3163 138 32 4 chr1 177155298 177155823 -20039609 - Lx4A LINE L1 -453 6605 6066 2 1936 2893 242 116 29 chr1 177156619 177157410 -20038022 - RMER13A LTR ERVK 0 860 1 2 1936 261 362 80 16 chr1 177157578 177157766 -20037666 + LTR82B Low_complexity ERVL 105 304 -526 2 1936 7286 82 12 3 chr1 177158231 177158496 -20036936 - L1_Mm LINE L1 -373 5510 5244 2 1936 564 15 0 0 chr1 177158496 177158561 -20036871 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1936 7286 82 12 3 chr1 177158561 177159352 -20036080 - L1_Mm LINE L1 -640 5243 4444 2 1936 7229 70 2 6 chr1 177159348 177160420 -20035012 + L1_Mus2 LINE L1 5498 6565 -1 2 1936 5044 156 1 6 chr1 177160452 177161342 -20034090 - Lx LINE L1 -33 5850 4965 2 1936 5002 114 42 16 chr1 177161342 177162136 -20033296 + Lx LINE L1 5841 6654 0 2 1936 7603 66 11 39 chr1 177162228 177163372 -20032060 + L1Md_A LINE L1 232 1344 -5380 2 1936 13108 23 1 0 chr1 177165999 177167606 -20027826 + L1Md_T LINE L1 3978 5586 -297 2 1936 8462 29 3 0 chr1 177167606 177168599 -20026833 + L1Md_T LINE L1 5587 6582 0 2 1936 3047 15 9 0 chr1 177168895 177169238 -20026194 + ORR1A0 LTR MaLR 1 346 0 2 1936 665 296 12 0 chr1 177170372 177170534 -20024898 + MTEb LTR MaLR 1 164 -215 2 1936 271 193 87 43 chr1 177170545 177170637 -20024795 + MTEb LTR MaLR 218 313 -66 2 1936 287 292 0 0 chr1 177170636 177170708 -20024724 + B3A SINE B2 13 84 -114 2 1936 387 0 0 0 chr1 177170709 177170752 -20024680 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1936 22 35 0 0 chr1 177170757 177170786 -20024646 + AT_rich Low_complexity Low_complexity 1 29 0 2 1936 360 280 110 0 chr1 177170888 177170988 -20024444 + PB1D7 SINE Alu 3 113 -7 2 1936 311 155 17 0 chr1 177171104 177171162 -20024270 + HAL1-3A_ME LINE L1 1976 2034 -824 2 1936 609 294 18 30 chr1 177171196 177171361 -20024071 - B3A SINE B2 -27 171 9 2 1936 210 71 0 0 chr1 177171601 177171629 -20023803 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 2 1936 21 36 0 0 chr1 177173220 177173248 -20022184 + AT_rich Low_complexity Low_complexity 1 28 0 2 1936 758 67 217 0 chr1 177173495 177173615 -20021817 - B1_Mus2 SINE Alu 0 147 2 2 1936 533 150 0 0 chr1 177175033 177175113 -20020319 + B2_Mm2 SINE B2 5 84 -111 2 1936 6042 30 3 8 chr1 177176059 177176796 -20018636 - L1Md_F3 LINE L1 -14 6570 5838 2 1936 6487 52 0 0 chr1 177176796 177177630 -20017802 + L1Md_F3 LINE L1 5028 5861 -22 2 1936 229 279 103 0 chr1 177177781 177177849 -20017583 + tRNA-Ala-GCG tRNA tRNA 1 75 0 2 1936 183 156 0 0 chr1 177179273 177179305 -20016127 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 2 1936 784 251 6 11 chr1 177179341 177179522 -20015910 - B3A SINE B2 -16 182 3 2 1936 257 262 0 0 chr1 177179877 177179938 -20015494 - MTEb LTR MaLR 0 379 319 2 1936 576 0 0 0 chr1 177180537 177180601 -20014831 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 2 1936 372 247 0 0 chr1 177180607 177180680 -20014752 - ID4_ SINE ID -10 73 1 2 1936 707 360 70 29 chr1 177181157 177181469 -20013963 + ORR1E LTR MaLR 3 327 -32 2 1936 749 326 112 18 chr1 177181478 177181878 -20013554 + RLTR28B LTR ERVL 9 446 -35 2 1936 9893 25 0 1 chr1 177182014 177183908 -20011524 - L1Md_T LINE L1 0 6582 4690 2 1936 6978 16 0 0 chr1 177183906 177184760 -20010672 + L1Md_T LINE L1 3823 4676 -1207 2 1936 289 309 0 0 chr1 177186055 177186123 -20009309 + ID4 SINE ID 3 70 -13 2 1936 558 0 0 0 chr1 177186123 177186185 -20009247 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1936 354 23 0 0 chr1 177186185 177186227 -20009205 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1936 285 279 0 0 chr1 177187167 177187235 -20008197 - ID4 SINE ID -14 69 2 2 1936 344 304 56 8 chr1 177187246 177187372 -20008060 - B1_Mur4 SINE Alu -5 145 14 2 1936 293 343 21 14 chr1 177187372 177187387 -20008045 - ID_B1 SINE B4 -4 219 78 2 1936 495 174 16 16 chr1 177190136 177190259 -20005173 - Lx9 LINE L1 -8 7636 7514 2 1936 546 95 21 10 chr1 177190259 177190355 -20005077 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1936 338 197 0 0 chr1 177190355 177190416 -20005016 - Lx9 LINE L1 -226 7418 7358 2 1936 315 49 0 0 chr1 177191651 177191692 -20003740 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1936 351 65 0 0 chr1 177191779 177191825 -20003607 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1936 27 0 0 0 chr1 177191832 177191859 -20003573 + AT_rich Low_complexity Low_complexity 1 27 0 2 1936 739 277 376 63 chr1 177193027 177193227 -20002205 + MER34A LTR ERV1 1 261 -310 2 1936 477 76 0 0 chr1 177193227 177193293 -20002139 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1936 739 314 61 25 chr1 177193293 177193541 -20001891 + MER34A LTR ERV1 262 520 -51 2 1936 222 248 272 0 chr1 177193919 177194044 -20001388 - L2 LINE L2 -959 2460 2302 2 1936 241 232 136 39 chr1 177194756 177194859 -20000573 + PB1D10 SINE Alu 3 115 -2 2 1936 626 376 16 32 chr1 177195796 177196046 -19999386 + B4A SINE B4 3 248 -44 2 1936 1050 112 0 0 chr1 177196946 177197115 -19998317 + (TCTA)n Simple_repeat Simple_repeat 3 171 0 2 1936 270 295 76 0 chr1 177198045 177198150 -19997282 - MER5A1 DNA MER1_type -46 120 8 2 1936 553 353 73 49 chr1 177200196 177200443 -19994989 - B4A SINE B4 -39 253 1 2 1936 306 0 0 0 chr1 177201588 177201622 -19993810 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1936 261 0 0 0 chr1 177201622 177201650 -19993782 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1936 216 0 0 0 chr1 177201650 177201674 -19993758 + (ATG)n Simple_repeat Simple_repeat 3 26 0 2 1936 530 239 47 47 chr1 177202054 177202247 -19993185 + L1MC4a LINE L1 7684 7876 -6 2 1936 206 318 0 0 chr1 177202460 177202526 -19992906 + MIR SINE MIR 88 153 -109 2 1936 423 0 0 0 chr1 177202605 177202652 -19992780 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1936 1243 118 21 0 chr1 177204237 177204424 -19991008 - B2_Mm2 SINE B2 -4 191 1 3 1936 5784 32 1 0 chr1 177204543 177205221 -19990211 + L1Md_T LINE L1 5902 6580 -2 3 1936 22 0 0 0 chr1 177205484 177205506 -19989926 + AT_rich Low_complexity Low_complexity 1 22 0 3 1936 507 340 42 23 chr1 177205506 177205723 -19989709 - MER2 DNA MER2_type -23 322 102 3 1936 879 24 16 16 chr1 177205757 177205886 -19989546 + L1Md_F3 LINE L1 6455 6583 -1 3 1936 216 0 0 0 chr1 177206008 177206032 -19989400 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1936 22 0 0 0 chr1 177207765 177207787 -19987645 + AT_rich Low_complexity Low_complexity 1 22 0 3 1936 190 158 0 50 chr1 177208004 177208044 -19987388 + L3b LINE CR1 107 144 -338 3 1936 361 194 202 10 chr1 177209086 177209185 -19986247 + B3A SINE B2 1 118 -80 3 30 665 321 128 21 chr1 177209278 177209536 -19985896 + B4 SINE B4 4 289 -3 3 1937 183 100 0 0 chr1 177209572 177209602 -19985830 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1937 220 269 33 16 chr1 177210045 177210166 -19985266 + (TTTG)n Simple_repeat Simple_repeat 2 124 0 3 1937 289 350 0 0 chr1 177210173 177210253 -19985179 - PB1D10 SINE Alu -26 91 12 3 1937 318 312 0 0 chr1 177210193 177210270 -19985162 - ID_B1 SINE B4 -72 152 76 3 1937 36 23 0 0 chr1 177210499 177210542 -19984890 + AT_rich Low_complexity Low_complexity 1 43 0 3 1937 36038 8 0 0 chr1 177210542 177215543 -19979889 - L1Md_A LINE L1 -2 6580 1581 3 1937 1442 248 63 101 chr1 177215578 177215857 -19979575 + RLTR40 LTR ERVK 19 275 -542 3 1937 715 40 0 20 chr1 177215857 177215958 -19979474 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1937 1442 255 229 81 chr1 177215958 177216375 -19979057 + RLTR40 LTR ERVK 276 766 -51 3 1937 319 211 0 0 chr1 177218102 177218173 -19977259 + Lx9 LINE L1 7571 7641 -3 3 1937 183 167 0 0 chr1 177220215 177220257 -19975175 + CT-rich Low_complexity Low_complexity 3 44 0 3 1937 385 269 58 16 chr1 177220329 177220450 -19974982 + MER89 LTR ERV1 434 559 0 3 1937 349 310 35 0 chr1 177221653 177221766 -19973666 - PB1D10 SINE Alu 0 117 1 3 1937 350 252 80 10 chr1 177223655 177223755 -19971677 + PB1D10 SINE Alu 1 107 -10 3 1937 236 309 161 0 chr1 177223959 177224040 -19971392 + PB1D10 SINE Alu 17 110 -7 3 1937 271 322 0 39 chr1 177224060 177224215 -19971217 - Charlie1a DNA MER1_type -1 1454 1306 3 1937 931 279 85 127 chr1 177224233 177224799 -19970633 - Charlie1a DNA MER1_type -265 1190 649 3 1937 318 296 76 92 chr1 177224914 177225130 -19970302 + ORR1D2 LTR MaLR 1 224 -154 3 1937 292 268 0 0 chr1 177225978 177226034 -19969398 + B1F SINE Alu 3 58 -91 3 1937 572 203 89 15 chr1 177226275 177226410 -19969022 + B1F SINE Alu 5 149 0 3 1937 255 269 97 44 chr1 177226776 177226789 -19968643 + CYRA11_Mm Unknown Y-chromosome 162 278 -337 3 1937 429 224 82 0 chr1 177226789 177226887 -19968545 - URR1B DNA MER1_type 0 225 120 3 1937 417 304 22 15 chr1 177227033 177227170 -19968262 + MIR SINE MIR 62 199 -63 3 1937 260 289 0 53 chr1 177227407 177227502 -19967930 + CT-rich Low_complexity Low_complexity 4 93 0 3 1937 223 355 45 67 chr1 177227607 177227785 -19967647 - L2b LINE L2 -120 3255 3082 3 1937 588 111 0 0 chr1 177228725 177228815 -19966617 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1937 405 248 113 63 chr1 177228848 177228990 -19966442 - RSINE1 SINE B4 -15 150 2 3 1937 276 333 28 49 chr1 177229441 177229583 -19965849 - MLT1L LTR MaLR -304 306 168 3 1937 966 213 5 15 chr1 177229824 177230024 -19965408 + B3 SINE B2 8 205 -11 3 1937 228 337 58 78 chr1 177230250 177230456 -19964976 + MER57D LTR ERV1 152 353 -58 3 1937 186 289 0 0 chr1 177231822 177231874 -19963558 - MER5A DNA MER1_type 0 189 138 3 1937 182 290 0 75 chr1 177231901 177231968 -19963464 - MER5A DNA MER1_type -124 65 4 3 1937 828 259 197 3 chr1 177231990 177232329 -19963103 - RCHARR1 DNA MER1_type -1 973 570 3 1937 7492 60 19 0 chr1 177232329 177233219 -19962213 - L1_Mur1 LINE L1 -1090 4796 3895 3 1937 207 0 0 0 chr1 177233219 177233242 -19962190 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1937 7492 60 19 0 chr1 177233242 177233318 -19962114 - L1_Mur1 LINE L1 -1992 3894 3813 3 1937 914 269 204 23 chr1 177233318 177233806 -19961626 - RCHARR1 DNA MER1_type -396 578 3 3 1937 2658 30 0 3 chr1 177233957 177234256 -19961176 + L1Md_F3 LINE L1 6276 6573 -11 3 1937 238 204 200 18 chr1 177235038 177235093 -19960339 + ID2 SINE ID 3 67 -16 3 1937 236 158 169 123 chr1 177235048 177235113 -19960319 + tRNA-Ala-GCA tRNA tRNA 6 73 -2 3 1937 606 140 0 0 chr1 177235137 177235237 -19960195 + (TGGA)n Simple_repeat Simple_repeat 3 102 0 3 1937 261 319 14 0 chr1 177235785 177235857 -19959575 + MER63C DNA AcHobo 9 81 -849 3 1937 26 0 0 0 chr1 177236623 177236649 -19958783 + AT_rich Low_complexity Low_complexity 1 26 0 3 1937 249 222 122 12 chr1 177236830 177236912 -19958520 - L1MB8 LINE L1 -248 5930 5840 3 1937 628 306 37 16 chr1 177237090 177237279 -19958153 + MLT1A0 LTR MaLR 173 365 0 3 1937 215 167 42 0 chr1 177238203 177238251 -19957181 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1937 403 250 7 13 chr1 177238255 177238409 -19957023 + (TATATG)n Simple_repeat Simple_repeat 1 153 0 3 1937 224 79 0 50 chr1 177239099 177239110 -19956322 + (GGAA)n Simple_repeat Simple_repeat 4 14 0 3 1937 1219 58 0 23 chr1 177239110 177239285 -19956147 + (GGAAA)n Simple_repeat Simple_repeat 4 174 0 3 1937 224 79 0 50 chr1 177239285 177239313 -19956119 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 3 1937 258 56 0 0 chr1 177239348 177239384 -19956048 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1937 429 286 26 125 chr1 177239412 177239512 -19955920 - MLT1A0 LTR MaLR -19 346 247 3 1937 513 0 0 0 chr1 177239512 177239569 -19955863 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1937 429 286 26 125 chr1 177239569 177239700 -19955732 - MLT1A0 LTR MaLR -119 246 138 3 1937 526 303 185 29 chr1 177239731 177239969 -19955463 - B4 SINE B4 -3 289 15 3 1937 225 325 23 11 chr1 177239966 177240053 -19955379 - MLT1A0 LTR MaLR -213 152 65 3 1937 252 200 0 0 chr1 177240529 177240584 -19954848 + CT-rich Low_complexity Low_complexity 2 56 0 3 1937 333 47 0 0 chr1 177241275 177241318 -19954114 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1937 459 0 0 0 chr1 177241386 177241437 -19953995 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1937 1653 234 83 8 chr1 177241451 177241513 -19953919 + MTD LTR MaLR 4 74 -345 3 1937 333 0 0 0 chr1 177241513 177241550 -19953882 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1937 1653 234 83 8 chr1 177241550 177241874 -19953558 + MTD LTR MaLR 75 418 -1 3 1937 1639 314 105 23 chr1 177241950 177242647 -19952785 + MTEa-int LTR MaLR 705 1575 -5 3 1937 543 289 19 51 chr1 177242657 177242814 -19952618 + MTEa LTR MaLR 6 157 -222 3 1937 284 301 10 51 chr1 177242821 177242919 -19952513 + MTEa LTR MaLR 276 369 -10 3 1937 290 258 59 49 chr1 177243404 177243506 -19951926 - PB1D10 SINE Alu -2 115 13 3 1937 21 71 0 0 chr1 177244172 177244214 -19951218 + AT_rich Low_complexity Low_complexity 1 42 0 3 1937 236 290 91 84 chr1 177245467 177245610 -19949822 + RMER15 LTR ERVL 14 157 -418 3 1937 569 302 148 4 chr1 177245618 177245861 -19949571 + RMER15 LTR ERVL 284 561 -14 3 1937 216 0 0 0 chr1 177246833 177246857 -19948575 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1937 253 241 60 48 chr1 177246919 177247002 -19948430 - B4 SINE B4 -208 84 1 3 1937 586 153 51 0 chr1 177247208 177247306 -19948126 + RMER6A LTR ERVK 650 752 -4 3 1937 3944 229 72 43 chr1 177247374 177247394 -19948038 - Lx5 LINE L1 0 7050 7035 3 1937 216 0 0 0 chr1 177247394 177247418 -19948014 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 3 1937 3944 229 72 43 chr1 177247418 177248431 -19947001 - Lx5 LINE L1 -16 7034 5988 3 1937 451 178 100 0 chr1 177248431 177248521 -19946911 - B4 SINE B4 -193 99 1 3 1937 540 0 0 0 chr1 177248862 177248922 -19946510 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1937 474 336 109 62 chr1 177248925 177249201 -19946231 - B4A SINE B4 -2 290 2 3 1937 21 36 0 0 chr1 177249270 177249298 -19946134 + AT_rich Low_complexity Low_complexity 1 28 0 3 1937 417 307 61 12 chr1 177249924 177250089 -19945343 - RMER15 LTR ERVL -14 561 389 3 1937 510 237 52 9 chr1 177251712 177251827 -19943605 - B1F1 SINE Alu -2 147 28 3 1937 525 58 0 0 chr1 177251856 177251925 -19943507 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1937 414 39 0 0 chr1 177252256 177252308 -19943124 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1937 566 255 42 18 chr1 177252361 177252529 -19942903 + Lx7 LINE L1 6174 6345 -1351 3 1937 2143 191 36 19 chr1 177253569 177253980 -19941452 - MTD LTR MaLR 0 419 2 3 1937 454 257 23 50 chr1 177254172 177254341 -19941091 + RLTR43A LTR ERVK 201 365 0 3 1937 416 262 176 24 chr1 177255005 177255130 -19940302 + B4A SINE B4 1 144 -148 3 1937 318 50 0 0 chr1 177255130 177255170 -19940262 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1937 294 180 0 0 chr1 177255312 177255373 -19940059 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1937 908 298 51 11 chr1 177255558 177255833 -19939599 - B4A SINE B4 0 292 7 3 1937 450 276 14 13 chr1 177256397 177256519 -19938913 + B1F1 SINE Alu 1 128 -19 3 1937 418 365 28 46 chr1 177256744 177256962 -19938470 - B4 SINE B4 -64 228 15 3 1937 707 108 7 72 chr1 177257569 177257708 -19937724 + B1_Mm SINE Alu 2 131 -16 3 1937 1986 188 24 11 chr1 177259609 177259990 -19935442 - ORR1B1 LTR MaLR -8 386 1 3 1937 344 263 54 68 chr1 177260002 177260149 -19935283 - MTE2b LTR MaLR -2 377 233 3 1937 182 308 46 0 chr1 177261363 177261428 -19934004 - MIRb SINE MIR -36 232 165 3 1937 1648 160 91 3 chr1 177263022 177263329 -19932103 + ORR1B1 LTR MaLR 53 386 -8 3 1937 201 329 41 0 chr1 177264101 177264174 -19931258 + MIRb SINE MIR 147 222 -46 3 1937 231 125 0 0 chr1 177265303 177265343 -19930089 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1937 318 115 0 0 chr1 177265342 177265394 -19930038 + (CCA)n Simple_repeat Simple_repeat 1 52 0 3 1937 670 311 146 10 chr1 177266311 177266706 -19928726 - L1MD1 LINE L1 -91 6151 5701 3 1937 273 312 101 91 chr1 177266706 177267502 -19927930 + L1M5 LINE L1 3188 3991 -2155 4 1937 358 20 19 19 chr1 177267658 177267710 -19927722 + (CATA)n Simple_repeat Simple_repeat 1 52 0 4 1937 1556 91 62 31 chr1 177268343 177268570 -19926862 - L1Md_F2 LINE L1 -1 6581 6348 4 1937 375 268 35 35 chr1 177268572 177268715 -19926717 - MTEb LTR MaLR 0 379 237 4 1937 276 239 84 50 chr1 177268703 177268822 -19926610 - B1_Mur1 SINE Alu -26 123 1 4 1937 39093 43 0 3 chr1 177269145 177275634 -19919798 - L1Md_T LINE L1 0 6585 18 4 1937 2341 71 3 20 chr1 177275990 177276290 -19919142 + L1_Mus2 LINE L1 6268 6562 -4 4 1937 196 368 0 0 chr1 177276489 177276565 -19918867 + MIRc SINE MIR 54 129 -139 4 1937 443 277 32 13 chr1 177276849 177277006 -19918426 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 1937 528 162 0 0 chr1 177277035 177277140 -19918292 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 1937 623 272 40 67 chr1 177277144 177277443 -19917989 - B4A SINE B4 0 292 2 4 1937 274 266 0 0 chr1 177277588 177277652 -19917780 - L1ME3A LINE L1 -53 6120 6057 4 1937 1167 75 0 0 chr1 177279553 177279700 -19915732 + B1_Mm SINE Alu 1 147 0 4 1937 200 196 39 0 chr1 177280297 177280348 -19915084 + A-rich Low_complexity Low_complexity 1 53 0 4 1937 234 0 0 0 chr1 177280884 177280910 -19914522 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1937 226 381 21 0 chr1 177281055 177281152 -19914280 + ORR1E LTR MaLR 45 143 -216 4 1937 1989 178 65 3 chr1 177282010 177282365 -19913067 - MTC LTR MaLR -8 413 37 4 1937 526 284 46 64 chr1 177282378 177282551 -19912881 + B3A SINE B2 47 216 0 4 1937 240 241 19 0 chr1 177282631 177282685 -19912747 - MIRm SINE MIR 0 276 222 4 1937 459 0 0 0 chr1 177283125 177283176 -19912256 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 1937 21 0 0 0 chr1 177283564 177283585 -19911847 + AT_rich Low_complexity Low_complexity 1 21 0 4 1937 231 275 40 80 chr1 177283632 177283707 -19911725 - ID4 SINE ID -11 72 1 4 1937 262 263 10 17 chr1 177283730 177283807 -19911625 - PB1D10 SINE Alu -28 99 25 4 1937 1978 121 29 7 chr1 177284538 177284846 -19910586 + Lx4A LINE L1 6735 7049 -9 4 1937 531 0 0 0 chr1 177284849 177284908 -19910524 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1937 559 249 8 9 chr1 177284936 177285053 -19910379 - PB1D10 SINE Alu -20 129 5 4 1937 568 0 0 27 chr1 177285513 177285587 -19909845 + (CATA)n Simple_repeat Simple_repeat 3 74 0 4 1937 575 306 86 5 chr1 177286450 177286647 -19908785 - ID_B1 SINE B4 -11 213 1 4 1937 926 280 146 13 chr1 177286741 177287378 -19908054 - L1MA6 LINE L1 -19 6281 5555 4 1937 456 19 0 0 chr1 177287381 177287434 -19907998 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1937 297 0 0 0 chr1 177288222 177288255 -19907177 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1937 36 0 0 0 chr1 177288457 177288493 -19906939 + AT_rich Low_complexity Low_complexity 1 36 0 4 1937 625 270 46 0 chr1 177289825 177289977 -19905455 + B3A SINE B2 3 161 -37 4 1937 249 212 101 45 chr1 177289984 177290073 -19905359 + MLT1K LTR MaLR 416 509 -86 4 1937 371 316 90 75 chr1 177290129 177290464 -19904968 + MLT1B LTR MaLR 3 342 -48 4 1937 856 150 50 0 chr1 177291353 177291513 -19903919 + URR1A DNA MER1_type 56 223 -3 4 1937 25 51 0 0 chr1 177292041 177292080 -19903352 + AT_rich Low_complexity Low_complexity 1 39 0 4 1937 278 115 50 30 chr1 177292691 177292790 -19902642 + CT-rich Low_complexity Low_complexity 4 104 0 4 1937 418 333 66 81 chr1 177293120 177293378 -19902054 + B4A SINE B4 39 292 0 4 1937 295 310 0 0 chr1 177293521 177293592 -19901840 - ID4 SINE ID -3 80 10 4 1937 257 309 127 24 chr1 177293717 177293883 -19901549 + MLT1J2 LTR MaLR 1 183 -265 4 1937 492 296 101 61 chr1 177293896 177294173 -19901259 + MLT2C1 LTR ERVL 6 293 -104 4 1937 419 164 0 9 chr1 177294173 177294278 -19901154 + CT-rich Low_complexity Low_complexity 1 104 0 4 1937 225 0 0 0 chr1 177294278 177294303 -19901129 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1937 190 271 21 123 chr1 177295032 177295130 -19900302 - MIR SINE MIR -137 131 34 4 1937 221 132 28 42 chr1 177295370 177295441 -19899991 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1937 1140 75 0 0 chr1 177295518 177295665 -19899767 + B1_Mm SINE Alu 1 147 0 4 1937 198 0 0 0 chr1 177295672 177295694 -19899738 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1937 2799 263 94 49 chr1 177295694 177296848 -19898584 + Lx9 LINE L1 6415 7619 -25 4 1937 342 0 0 0 chr1 177296961 177296999 -19898433 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1937 554 231 37 0 chr1 177297023 177297131 -19898301 - RSINE1 SINE B4 -50 115 4 4 1937 593 224 59 24 chr1 177297924 177298093 -19897339 + RMER1A Other Other 20 194 -836 4 1937 2324 169 79 21 chr1 177298096 177298578 -19896854 + RMER1B Other Other 540 1049 -17 4 1937 722 106 0 8 chr1 177298600 177298724 -19896708 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 4 1937 421 242 50 0 chr1 177298792 177298891 -19896541 - RSINE1 SINE B4 -46 119 16 4 1937 2289 68 29 0 chr1 177299685 177299992 -19895440 + Lx3_Mus LINE L1 6686 7001 -8 4 1937 1049 46 0 0 chr1 177300011 177300142 -19895290 + B1_Mus1 SINE Alu 11 141 -7 4 1937 241 385 0 35 chr1 177301685 177301798 -19893634 + MLT1G3 LTR MaLR 424 532 -63 4 1937 459 0 0 0 chr1 177302210 177302261 -19893171 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1937 418 272 107 16 chr1 177302286 177302473 -19892959 + L1MC4a LINE L1 7663 7866 -16 4 1937 914 192 4 0 chr1 177302484 177302749 -19892683 + GA-rich Low_complexity Low_complexity 1 266 0 4 1937 188 227 14 43 chr1 177303699 177303768 -19891664 + L4 LINE RTE 164 230 -1799 4 1937 287 349 107 12 chr1 177303785 177303953 -19891479 - B3A SINE B2 -14 184 1 4 1937 670 223 67 66 chr1 177304200 177304462 -19890970 - MTEa LTR MaLR -22 357 62 4 1937 1005 317 39 91 chr1 177304879 177305672 -19889760 - L1MA5A LINE L1 -1567 5906 5128 4 1937 615 282 62 31 chr1 177305657 177305917 -19889515 - L1MA5A LINE L1 -1859 4021 3754 4 1937 1213 280 91 9 chr1 177305934 177306276 -19889156 + MTE2b LTR MaLR 6 375 -4 4 1937 317 209 0 0 chr1 177306285 177306352 -19889080 - L1MA5A LINE L1 -2145 3735 3669 4 1937 1110 314 58 54 chr1 177306481 177306836 -19888596 - L1MA5A LINE L1 -2540 3340 3013 4 1937 1604 139 59 3 chr1 177306836 177307125 -19888307 - Lx2A1 LINE L1 -5 7003 6699 4 1937 1110 315 60 57 chr1 177307125 177308082 -19887350 - L1MA5A LINE L1 -2814 3033 2052 4 1937 261 0 0 0 chr1 177308082 177308111 -19887321 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1937 1147 51 0 0 chr1 177308112 177308249 -19887183 - B1_Mus1 SINE Alu -11 137 1 4 1937 942 319 72 72 chr1 177308249 177308674 -19886758 - L1MA5A LINE L1 -3796 2051 1604 4 1937 260 278 75 69 chr1 177308693 177308867 -19886565 - YREP_Mm Unknown Unknown -1458 354 180 4 1937 1091 64 0 0 chr1 177308730 177308870 -19886562 + B1_Mus1 SINE Alu 8 147 -1 4 1937 240 262 15 15 chr1 177310420 177310486 -19884946 + CT-rich Low_complexity Low_complexity 4 69 0 4 1937 225 211 0 0 chr1 177311317 177311369 -19884063 + GA-rich Low_complexity Low_complexity 2 53 0 4 1937 202 253 72 0 chr1 177311801 177311884 -19883548 - MIR SINE MIR 0 262 174 4 1937 2191 136 47 11 chr1 177312037 177312417 -19883015 - ORR1B1 LTR MaLR 0 394 1 4 1937 404 275 82 9 chr1 177312441 177312551 -19882881 + B1F1 SINE Alu 23 140 -9 4 1937 297 75 0 0 chr1 177312628 177312668 -19882764 + (GGA)n Simple_repeat Simple_repeat 3 42 0 4 1937 2368 149 44 7 chr1 177312693 177313099 -19882333 + MTC LTR MaLR 1 421 0 4 1937 298 298 72 31 chr1 177313125 177313347 -19882085 - L1MB7 LINE L1 -297 5887 5657 4 1937 258 325 45 13 chr1 177313336 177313492 -19881940 - L1M3 LINE L1 -615 5556 5396 4 1937 606 309 60 26 chr1 177313567 177313985 -19881447 - L1MD LINE L1 -872 5274 4843 4 1937 761 296 20 2 chr1 177314063 177314260 -19881172 - B3A SINE B2 -12 204 2 4 1937 21 0 0 0 chr1 177314290 177314311 -19881121 + AT_rich Low_complexity Low_complexity 1 21 0 4 1937 411 280 8 8 chr1 177314331 177314450 -19880982 - Lx7 LINE L1 -412 7284 7166 4 1937 187 286 0 0 chr1 177314703 177314745 -19880687 + L2c LINE L2 3116 3157 -230 4 1937 297 0 0 0 chr1 177315423 177315456 -19879976 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1937 243 0 0 0 chr1 177315456 177315482 -19879950 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1937 302 326 23 23 chr1 177315716 177315848 -19879584 - MIR3 SINE MIR -67 141 10 4 1937 192 221 26 13 chr1 177316240 177316318 -19879114 + GA-rich Low_complexity Low_complexity 4 82 0 4 1937 232 290 130 116 chr1 177316398 177316683 -19878749 + MLT1L LTR MaLR 314 602 -8 4 1937 221 235 0 29 chr1 177318037 177318069 -19877363 + polypurine Low_complexity Low_complexity 6 36 0 4 1937 1368 67 0 0 chr1 177318069 177318249 -19877183 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1937 221 235 0 29 chr1 177318249 177318286 -19877146 + polypurine Low_complexity Low_complexity 37 73 0 4 1937 429 296 111 8 chr1 177319112 177319238 -19876194 + RSINE1 SINE B4 12 150 -15 4 1937 1349 131 14 7 chr1 177320822 177321106 -19874326 + (TAGA)n Simple_repeat Simple_repeat 1 286 0 4 1937 279 0 0 0 chr1 177321598 177321629 -19873803 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1937 429 311 24 16 chr1 177321932 177322056 -19873376 + PB1 SINE Alu 1 125 -2 4 1937 1148 285 59 5 chr1 177322779 177323202 -19872230 + L1_Mur3 LINE L1 5355 5800 -80 4 1937 873 147 12 6 chr1 177323206 177323377 -19872055 + (TA)n Simple_repeat Simple_repeat 2 173 0 4 1937 1166 114 34 0 chr1 177324266 177324442 -19870990 - B2_Mm2 SINE B2 -7 188 7 4 1937 505 363 0 0 chr1 177324698 177324844 -19870588 + B1F2 SINE Alu 2 147 -2 4 1937 229 304 43 14 chr1 177325211 177325281 -19870151 + ORR1E LTR MaLR 77 148 -211 4 1937 270 0 0 0 chr1 177325388 177325418 -19870014 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1937 838 294 0 10 chr1 177325419 177325615 -19869817 - B3 SINE B2 -21 195 2 5 1937 328 67 44 0 chr1 177325701 177325746 -19869686 - HAL1-3A_ME LINE L1 -846 2012 1966 5 1937 389 291 58 22 chr1 177325898 177326035 -19869397 + B1F SINE Alu 1 142 -7 5 1937 35301 28 1 8 chr1 177326798 177331989 -19863443 + L1Md_T LINE L1 438 5586 -297 5 1937 8473 32 0 0 chr1 177331989 177332983 -19862449 + L1Md_T LINE L1 5587 6580 -2 5 1937 26 30 0 0 chr1 177332993 177333026 -19862406 + AT_rich Low_complexity Low_complexity 1 33 0 5 1937 288 129 22 82 chr1 177333146 177333281 -19862151 + (TTTG)n Simple_repeat Simple_repeat 2 128 0 5 1937 1318 41 0 0 chr1 177333284 177333431 -19862001 - B1_Mm SINE Alu 0 147 1 5 1937 204 111 0 0 chr1 177334091 177334127 -19861305 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 1937 312 271 0 0 chr1 177335148 177335218 -19860214 + ID4 SINE ID 2 71 -12 5 1937 369 277 52 68 chr1 177335781 177335958 -19859474 - MLT1A1 LTR MaLR -2 406 203 5 1937 195 42 0 0 chr1 177336036 177336060 -19859372 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1937 276 333 24 24 chr1 177336431 177336554 -19858878 + RMER15 LTR ERVL 353 475 -100 5 1937 272 283 0 10 chr1 177336849 177336949 -19858483 - L1M4 LINE L1 -977 5169 5071 5 1937 500 115 9 28 chr1 177337326 177337433 -19857999 + (TA)n Simple_repeat Simple_repeat 1 105 0 5 1937 615 312 53 19 chr1 177339083 177339258 -19856174 + B3 SINE B2 1 182 -34 5 1937 414 39 0 0 chr1 177339258 177339310 -19856122 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1937 615 312 53 19 chr1 177339310 177339343 -19856089 + B3 SINE B2 183 216 0 5 1938 321 150 10 20 chr1 177342061 177342163 -19853269 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 5 1938 30 0 0 0 chr1 177342169 177342199 -19853233 + AT_rich Low_complexity Low_complexity 1 30 0 5 1938 1651 54 0 0 chr1 177342232 177342418 -19853014 + B2_Mm1t SINE B2 1 186 -7 5 1938 380 20 20 0 chr1 177342476 177342525 -19852907 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 5 1938 24 0 0 0 chr1 177342603 177342627 -19852805 + AT_rich Low_complexity Low_complexity 1 24 0 5 1938 1256 29 0 0 chr1 177343591 177343729 -19851703 + B1_Mm SINE Alu 1 138 -9 5 1938 534 16 0 0 chr1 177343729 177343792 -19851640 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 5 1938 211 281 15 15 chr1 177343894 177343959 -19851473 + GA-rich Low_complexity Low_complexity 3 67 0 5 1938 1114 145 130 0 chr1 177344279 177344479 -19850953 - URR1A DNA MER1_type 0 226 1 5 1938 516 272 264 29 chr1 177345076 177345383 -19850049 + LTR53 LTR ERVL 141 519 0 5 1938 644 239 110 65 chr1 177346325 177346571 -19848861 - MER2 DNA MER2_type 0 345 89 5 1938 218 136 0 22 chr1 177347434 177347479 -19847953 + CT-rich Low_complexity Low_complexity 2 45 0 5 1938 474 49 0 0 chr1 177347579 177347640 -19847792 + (TCC)n Simple_repeat Simple_repeat 3 63 0 5 1938 229 318 18 61 chr1 177348171 177348285 -19847147 - HAL1 LINE L1 -1622 885 777 5 1938 208 241 0 0 chr1 177348336 177348390 -19847042 + CT-rich Low_complexity Low_complexity 1 54 0 5 1938 343 362 72 0 chr1 177348555 177348707 -19846725 - MER20 DNA MER1_type -21 198 36 5 1938 893 264 29 10 chr1 177349477 177349684 -19845748 + ID_B1 SINE B4 1 211 -13 5 1938 447 19 0 0 chr1 177349949 177350001 -19845431 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 5 1938 1881 284 75 32 chr1 177350410 177351062 -19844370 + Lx8 LINE L1 6792 7471 -2 5 1938 697 273 22 17 chr1 177351329 177351508 -19843924 + B3A SINE B2 1 180 -18 5 1938 1116 253 48 71 chr1 177351763 177352225 -19843207 + MT2B LTR ERVL 1 546 -55 5 1938 573 42 0 0 chr1 177352247 177352319 -19843113 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1938 1141 250 171 3 chr1 177352375 177352696 -19842736 + MTEb LTR MaLR 3 377 -2 5 1938 725 311 107 4 chr1 177353767 177354048 -19841384 + Tigger7 DNA MER2_type 61 370 -2121 5 1938 434 237 103 147 chr1 177354058 177354165 -19841267 + Tigger7 DNA MER2_type 2244 2374 -117 5 1938 504 48 0 0 chr1 177354165 177354228 -19841204 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1938 434 237 103 147 chr1 177354228 177354352 -19841080 + Tigger7 DNA MER2_type 2375 2465 -26 5 1938 414 349 39 0 chr1 177354461 177354590 -19840842 - B1F SINE Alu -7 142 9 5 1938 307 299 45 28 chr1 177354857 177355036 -19840396 - L1MDb LINE L1 -5181 1321 1137 5 1938 863 88 41 0 chr1 177355045 177355215 -19840217 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 5 1938 677 244 19 107 chr1 177355425 177355641 -19839791 + B3A SINE B2 1 197 -1 5 1938 230 272 37 12 chr1 177359780 177359862 -19835570 + ORR1D2 LTR MaLR 56 139 -231 5 1938 222 37 0 0 chr1 177360485 177360512 -19834920 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1938 416 19 0 19 chr1 177361023 177361077 -19834355 + (GGA)n Simple_repeat Simple_repeat 2 54 0 5 1938 311 263 69 17 chr1 177365679 177365795 -19829637 + L1M6 LINE L1 555 676 -5820 5 1938 300 111 0 0 chr1 177366098 177366143 -19829289 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1938 310 301 0 97 chr1 177366291 177366405 -19829027 + PB1D10 SINE Alu 13 115 -2 5 1938 265 293 13 13 chr1 177368568 177368644 -19826788 - ID4_ SINE ID 0 83 8 5 1938 669 287 7 34 chr1 177368677 177368825 -19826607 + RSINE1 SINE B4 4 147 -18 5 1938 303 28 0 0 chr1 177368837 177368873 -19826559 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1938 182 311 22 0 chr1 177369139 177369184 -19826248 - L2b LINE L2 -43 3332 3287 5 1938 201 226 0 0 chr1 177369607 177369660 -19825772 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1938 283 362 54 41 chr1 177369751 177369898 -19825534 + ORR1E LTR MaLR 1 149 -210 5 1938 333 304 0 0 chr1 177370233 177370312 -19825120 - ID4_ SINE ID -2 81 3 5 1938 410 271 40 24 chr1 177370334 177370459 -19824973 - B1F SINE Alu -2 147 21 5 1938 1973 163 102 3 chr1 177370823 177371155 -19824277 + ORR1B2 LTR MaLR 3 367 0 5 1938 419 278 0 65 chr1 177371553 177371676 -19823756 + RSINE1 SINE B4 8 122 -43 5 1938 678 130 0 0 chr1 177371701 177371809 -19823623 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 5 1938 409 291 50 16 chr1 177372653 177372835 -19822597 - L1MC1 LINE L1 -1 6332 6145 5 1938 746 273 112 0 chr1 177372861 177373066 -19822366 - MTE-int LTR MaLR -1192 388 161 5 1938 532 271 68 43 chr1 177373084 177373390 -19822042 - ORR1E LTR MaLR -13 366 1 5 1938 1267 54 0 0 chr1 177373726 177373873 -19821559 - B1_Mus2 SINE Alu 0 147 1 5 1938 263 346 9 9 chr1 177374668 177374776 -19820656 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 1938 317 291 109 51 chr1 177375424 177375580 -19819852 + RSINE1 SINE B4 1 165 0 5 1938 294 180 0 0 chr1 177375580 177375641 -19819791 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1938 483 18 0 0 chr1 177377035 177377091 -19818341 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1938 270 164 0 0 chr1 177377209 177377264 -19818168 + CT-rich Low_complexity Low_complexity 2 56 0 5 1938 269 61 0 0 chr1 177377483 177377516 -19817916 + U2 snRNA snRNA 1 33 -155 5 1938 238 295 62 125 chr1 177377514 177377642 -19817790 - B4A SINE B4 -76 216 97 5 1938 350 285 152 0 chr1 177377642 177377793 -19817639 + Lx9 LINE L1 7288 7461 -183 5 1938 183 129 0 0 chr1 177377795 177377826 -19817606 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1938 353 203 40 16 chr1 177377827 177377952 -19817480 + Lx9 LINE L1 7514 7641 -3 5 1938 325 250 29 0 chr1 177377974 177378042 -19817390 - B4A SINE B4 -196 96 27 5 1938 643 340 36 36 chr1 177378699 177378980 -19816452 - B4A SINE B4 -10 282 2 5 1938 646 294 29 23 chr1 177379407 177379581 -19815851 + B3A SINE B2 6 180 -18 5 1938 242 268 56 111 chr1 177379992 177380118 -19815314 - Tigger9b DNA MER2_type -50 574 456 5 1938 315 0 0 0 chr1 177380130 177380165 -19815267 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1938 2167 111 25 173 chr1 177380166 177380645 -19814787 + RLTR23 LTR ERV1 1 408 -22 5 1938 1237 75 0 0 chr1 177380679 177380826 -19814606 + B1_Mm SINE Alu 1 147 0 5 1938 1400 73 62 0 chr1 177380837 177381015 -19814417 + B2_Mm2 SINE B2 2 190 -5 5 1938 446 355 117 23 chr1 177381066 177381418 -19814014 - Tigger9b DNA MER2_type -239 385 1 5 1938 537 80 0 0 chr1 177381843 177381918 -19813514 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 5 1938 324 268 138 38 chr1 177381930 177382089 -19813343 - MER63D DNA AcHobo -886 175 1 5 1938 867 133 6 12 chr1 177382673 177382840 -19812592 + GA-rich Low_complexity Low_complexity 4 169 0 5 1938 459 264 0 0 chr1 177383263 177383354 -19812078 + ID_B1 SINE B4 122 212 -12 5 1938 393 268 42 42 chr1 177383696 177383840 -19811592 + ID_B1 SINE B4 81 224 0 5 1938 585 244 96 0 chr1 177383853 177383988 -19811444 + B1_Mur1 SINE Alu 1 148 -1 5 1938 21 71 0 0 chr1 177383988 177384030 -19811402 + AT_rich Low_complexity Low_complexity 1 42 0 5 1938 238 274 77 46 chr1 177384053 177384118 -19811314 + PB1D10 SINE Alu 3 69 -48 5 1938 405 0 0 0 chr1 177384126 177384171 -19811261 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1938 973 261 78 12 chr1 177384550 177384786 -19810646 + B4A SINE B4 16 269 -23 5 1938 297 0 0 0 chr1 177384786 177384819 -19810613 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1938 973 261 78 12 chr1 177384819 177384838 -19810594 + B4A SINE B4 270 288 -4 5 1938 29 60 0 0 chr1 177385149 177385199 -19810233 + AT_rich Low_complexity Low_complexity 1 50 0 5 1938 534 31 0 0 chr1 177385216 177385280 -19810152 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1938 532 252 0 10 chr1 177385282 177385386 -19810046 - RSINE1 SINE B4 -54 111 9 5 1938 459 0 0 0 chr1 177386782 177386833 -19808599 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1938 28 0 0 0 chr1 177386833 177386861 -19808571 + AT_rich Low_complexity Low_complexity 1 28 0 5 1938 1179 116 134 10 chr1 177388638 177388839 -19806593 + URR1A DNA MER1_type 1 226 0 5 1938 259 247 316 25 chr1 177389128 177389334 -19806098 - L1MA4 LINE L1 -24 6276 6010 6 1938 204 125 62 0 chr1 177390793 177390841 -19804591 + CT-rich Low_complexity Low_complexity 1 51 0 6 1938 386 188 88 0 chr1 177391273 177391353 -19804079 - RSINE1 SINE B4 -32 133 47 6 1938 793 265 37 57 chr1 177391478 177391774 -19803658 - B4A SINE B4 0 292 3 6 1938 403 242 11 21 chr1 177392011 177392104 -19803328 + B4A SINE B4 2 93 -199 6 1938 487 351 0 36 chr1 177392132 177392327 -19803105 + B4A SINE B4 97 284 -8 6 1938 232 245 20 0 chr1 177392369 177392418 -19803014 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1938 24 0 0 0 chr1 177393092 177393116 -19802316 + AT_rich Low_complexity Low_complexity 1 24 0 6 1938 675 186 8 0 chr1 177393120 177393238 -19802194 + B3 SINE B2 2 120 -96 6 1938 593 27 13 0 chr1 177393240 177393315 -19802117 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1938 324 0 0 0 chr1 177393315 177393350 -19802082 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1938 29 0 0 0 chr1 177393397 177393426 -19802006 + AT_rich Low_complexity Low_complexity 1 29 0 6 1938 368 233 46 33 chr1 177393548 177393661 -19801771 - PB1D10 SINE Alu -1 119 4 6 1938 441 0 0 0 chr1 177394949 177394998 -19800434 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1938 789 267 15 0 chr1 177395007 177395202 -19800230 - B3 SINE B2 -16 200 3 6 1938 493 189 444 7 chr1 177395223 177395367 -19800065 - B3 SINE B2 -9 207 1 6 1938 248 267 21 95 chr1 177395981 177396076 -19799356 + ORR1E LTR MaLR 5 92 -287 6 1938 315 240 174 61 chr1 177396162 177396375 -19799057 + ORR1E LTR MaLR 97 333 -26 6 1938 603 40 0 0 chr1 177396918 177396992 -19798440 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1938 198 0 0 0 chr1 177397292 177397314 -19798118 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1938 318 50 0 0 chr1 177397327 177397367 -19798065 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1938 800 316 14 34 chr1 177397382 177397674 -19797758 - B4A SINE B4 -6 286 1 6 1938 249 243 40 0 chr1 177398444 177398518 -19796914 + 4.5SRNA scRNA scRNA 3 79 -15 6 1938 218 204 0 0 chr1 177398479 177398523 -19796909 + PB1D10 SINE Alu 43 86 -31 6 1938 474 297 49 49 chr1 177398530 177398693 -19796739 + RSINE1 SINE B4 3 165 0 6 1938 22 35 0 0 chr1 177398712 177398741 -19796691 + AT_rich Low_complexity Low_complexity 1 29 0 6 1938 837 268 14 56 chr1 177399851 177400136 -19795296 - B4A SINE B4 -18 274 2 6 1938 415 264 55 0 chr1 177400508 177400618 -19794814 + PB1D10 SINE Alu 1 116 -1 6 1938 728 261 13 176 chr1 177401068 177401380 -19794052 + B4 SINE B4 2 262 -30 6 1938 291 93 0 0 chr1 177401384 177401427 -19794005 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1938 706 174 129 0 chr1 177401597 177401729 -19793703 + B1_Mur2 SINE Alu 1 149 0 6 1938 213 39 0 0 chr1 177402761 177402787 -19792645 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 6 1938 232 373 45 13 chr1 177403744 177403921 -19791511 + MIR3 SINE MIR 15 200 -68 6 1938 726 296 74 38 chr1 177404265 177404631 -19790801 - Tigger7 DNA MER2_type -8 2483 2105 6 1938 230 234 15 30 chr1 177404769 177404835 -19790597 - MTEb LTR MaLR 0 379 315 6 1938 1699 144 31 124 chr1 177405081 177405533 -19789899 - RMER17C LTR ERVK 0 410 1 6 1938 212 301 24 0 chr1 177406134 177406217 -19789215 + PB1D10 SINE Alu 33 117 0 6 1938 411 202 0 0 chr1 177406437 177406546 -19788886 + (TG)n Simple_repeat Simple_repeat 1 109 0 6 1938 23 0 0 0 chr1 177406820 177406843 -19788589 + AT_rich Low_complexity Low_complexity 1 23 0 6 1938 231 302 0 30 chr1 177407088 177407187 -19788245 + GA-rich Low_complexity Low_complexity 4 99 0 6 1938 462 335 41 16 chr1 177407318 177407512 -19787920 - MLT1J LTR MaLR -290 222 24 6 1938 322 198 8 57 chr1 177409359 177409482 -19785950 + T-rich Low_complexity Low_complexity 3 119 0 6 1938 203 290 0 28 chr1 177409552 177409623 -19785809 + GA-rich Low_complexity Low_complexity 3 71 0 6 1938 209 319 129 20 chr1 177409708 177409855 -19785577 - MIRb SINE MIR -37 231 69 6 1938 868 230 5 26 chr1 177410225 177410417 -19785015 + B3 SINE B2 1 188 -28 6 1938 238 222 0 36 chr1 177410442 177410498 -19784934 + B3 SINE B2 150 203 -13 6 1938 571 274 124 1 chr1 177410643 177410873 -19784559 + L1M4 LINE L1 5315 5569 -610 6 1938 522 318 72 50 chr1 177410880 177411284 -19784148 + L1MB3 LINE L1 5621 6033 -150 6 1938 474 337 51 28 chr1 177411286 177411539 -19783893 + B4A SINE B4 20 278 -14 6 1938 266 297 0 0 chr1 177411551 177411615 -19783817 + (CATA)n Simple_repeat Simple_repeat 3 66 0 6 1938 407 125 0 14 chr1 177411638 177411711 -19783721 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 6 1938 987 214 26 35 chr1 177411773 177412001 -19783431 + URR1A DNA MER1_type 1 226 0 6 1938 309 109 0 0 chr1 177412203 177412249 -19783183 + (TTCG)n Simple_repeat Simple_repeat 4 49 0 6 1938 547 275 0 0 chr1 177412253 177412384 -19783048 - B1F SINE Alu -18 131 1 6 1938 208 202 202 0 chr1 177412388 177412477 -19782955 - MIR SINE MIR -59 203 97 6 1938 1150 168 77 0 chr1 177412730 177412939 -19782493 + URR1A DNA MER1_type 1 225 -1 6 1938 195 42 0 0 chr1 177413567 177413591 -19781841 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1938 197 178 0 22 chr1 177413767 177413813 -19781619 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 6 1938 305 356 41 36 chr1 177414125 177414320 -19781112 - MER3 DNA MER1_type -3 206 11 6 1938 687 185 41 7 chr1 177414515 177414662 -19780770 + ORR1B2 LTR MaLR 216 367 0 6 1938 552 326 21 10 chr1 177417454 177417646 -19777786 + B4 SINE B4 1 194 -98 6 1938 180 0 0 0 chr1 177417647 177417667 -19777765 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1938 324 0 0 0 chr1 177417715 177417751 -19777681 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1938 237 33 0 0 chr1 177418416 177418446 -19776986 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1938 358 156 26 99 chr1 177418584 177418776 -19776656 + RMER17C LTR ERVK 97 274 -136 6 1938 254 217 0 14 chr1 177418835 177418905 -19776527 + GA-rich Low_complexity Low_complexity 2 70 0 6 1938 1018 97 17 11 chr1 177418905 177419082 -19776350 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 1938 308 268 12 0 chr1 177419091 177419173 -19776259 + PB1D9 SINE Alu 38 120 0 6 1938 845 121 24 6 chr1 177420793 177420953 -19774479 + GA-rich Low_complexity Low_complexity 3 165 0 6 1938 1234 73 11 6 chr1 177420953 177421132 -19774300 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1938 396 0 0 0 chr1 177421371 177421415 -19774017 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1938 22 35 0 0 chr1 177422249 177422278 -19773154 + GC_rich Low_complexity Low_complexity 1 29 0 6 1938 24 67 0 0 chr1 177422539 177422584 -19772848 + GC_rich Low_complexity Low_complexity 1 45 0 6 1938 258 136 0 0 chr1 177422896 177422940 -19772492 + (TGGG)n Simple_repeat Simple_repeat 4 47 0 6 1938 258 32 0 0 chr1 177423628 177423659 -19771773 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1938 419 252 109 8 chr1 177423664 177423792 -19771640 - B1F1 SINE Alu -8 141 1 6 1938 24 0 0 0 chr1 177424901 177424925 -19770507 + AT_rich Low_complexity Low_complexity 1 24 0 6 1938 347 321 83 86 chr1 177425075 177425244 -19770188 + L2a LINE L2 2783 2960 -459 6 1938 991 257 184 8 chr1 177425244 177425597 -19769835 - MTD LTR MaLR 0 419 5 6 1938 347 313 98 70 chr1 177425597 177425849 -19769583 + L2a LINE L2 2961 3221 -205 6 1938 8093 56 3 4 chr1 177427899 177428963 -19766469 - L1Md_F2 LINE L1 -1 6581 5519 6 1938 450 240 40 8 chr1 177428965 177429091 -19766341 + MLT1A0 LTR MaLR 230 359 -6 6 1938 344 340 111 8 chr1 177429532 177429793 -19765639 + L3 LINE CR1 4101 4388 -101 6 1938 1057 193 149 98 chr1 177430699 177431055 -19764377 + ORR1D1 LTR MaLR 1 374 0 6 1938 252 0 0 0 chr1 177431575 177431603 -19763829 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1938 7771 96 14 31 chr1 177431603 177432785 -19762647 - Lx3_Mus LINE L1 -23 6986 5825 6 1938 687 25 0 0 chr1 177433201 177433282 -19762150 + (CTTTG)n Simple_repeat Simple_repeat 3 83 0 6 1938 299 186 51 0 chr1 177433311 177433370 -19762062 - B1F1 SINE Alu -40 109 48 6 1938 270 292 0 0 chr1 177433370 177433383 -19762049 - ID_B1 SINE B4 -37 187 116 6 1938 359 275 165 62 chr1 177433737 177433997 -19761435 + Lx8 LINE L1 7179 7465 -8 6 1938 242 304 78 0 chr1 177434021 177434136 -19761296 + L2 LINE L2 2656 2779 -640 6 1938 226 254 0 0 chr1 177435436 177435491 -19759941 - MLT1J1 LTR MaLR -21 423 369 6 1938 244 297 0 0 chr1 177435511 177435575 -19759857 + ID4_ SINE ID 1 64 -19 6 1938 317 247 10 30 chr1 177435637 177435737 -19759695 + PB1D10 SINE Alu 15 112 -5 6 1938 321 197 0 0 chr1 177435737 177435803 -19759629 + GA-rich Low_complexity Low_complexity 4 69 0 6 1938 817 288 11 85 chr1 177435929 177436282 -19759150 - Lx6 LINE L1 -2 7458 7132 6 1938 268 241 35 24 chr1 177436869 177436954 -19758478 + PB1D10 SINE Alu 32 117 0 6 1938 258 253 0 94 chr1 177437792 177437888 -19757544 + PB1D10 SINE Alu 1 87 -30 6 1938 466 226 15 0 chr1 177438260 177438397 -19757035 + GA-rich Low_complexity Low_complexity 2 140 0 6 1938 672 274 91 32 chr1 177438630 177439270 -19756162 + L1MB8 LINE L1 5101 5770 -414 6 1938 934 242 56 132 chr1 177439279 177439689 -19755743 - MTE2a LTR MaLR 0 379 1 6 1938 253 293 127 45 chr1 177439694 177439851 -19755581 + L1MB8 LINE L1 5791 5960 -218 6 1938 234 306 83 0 chr1 177439907 177440028 -19755404 + L1MB8 LINE L1 6041 6171 -13 6 1938 214 222 125 36 chr1 177440530 177440586 -19754846 + ID4_ SINE ID 12 72 -11 6 1938 559 27 0 0 chr1 177442105 177442178 -19753254 - B1_Mus2 SINE Alu 0 147 75 7 1938 238 351 0 0 chr1 177442441 177442575 -19752857 + (CTG)n Simple_repeat Simple_repeat 3 136 0 7 1938 491 275 0 18 chr1 177444918 177445029 -19750403 - PB1D10 SINE Alu -8 109 1 7 1938 238 176 0 38 chr1 177445352 177445405 -19750027 + PB1D10 SINE Alu 66 116 -1 7 1938 525 228 58 112 chr1 177445560 177445718 -19749714 + B3A SINE B2 5 154 -44 7 1938 615 27 0 0 chr1 177445718 177445791 -19749641 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 1938 525 228 58 112 chr1 177445791 177445820 -19749612 + B3A SINE B2 155 182 -16 7 1938 1007 257 80 14 chr1 177445927 177446278 -19749154 + L1MCa LINE L1 1519 1892 -4616 7 1938 1800 167 62 78 chr1 177446349 177446798 -19748634 - RMER10A LTR ERVL 0 442 1 7 1938 414 312 68 32 chr1 177447015 177447296 -19748136 + L1MCa LINE L1 2067 2357 -4151 7 1938 1307 39 0 31 chr1 177447301 177447461 -19747971 + L1_Mus1 LINE L1 6413 6567 0 7 1938 240 318 16 0 chr1 177447479 177447542 -19747890 + tRNA-Ala-GCY_ tRNA tRNA 5 68 -7 7 1938 284 293 20 0 chr1 177447544 177447643 -19747789 + L1MCa LINE L1 2360 2460 -3861 7 1938 194 83 56 0 chr1 177447754 177447790 -19747642 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 7 1938 292 195 65 0 chr1 177447839 177447916 -19747516 + L1MC LINE L1 2315 2396 -3750 7 1938 283 294 110 11 chr1 177447934 177448116 -19747316 + L1MC LINE L1 2499 2698 -3448 7 1938 3064 34 0 0 chr1 177448110 177448464 -19746968 - L1Md_F2 LINE L1 -330 5553 5200 7 1938 8391 57 2 5 chr1 177448464 177449461 -19745971 + L1Md_F2 LINE L1 5589 6582 0 7 1938 294 239 43 190 chr1 177449462 177449540 -19745892 + L1MC LINE L1 2964 3034 -3112 7 1938 804 283 0 0 chr1 177449540 177449720 -19745712 + B3A SINE B2 3 182 -16 7 1938 294 239 43 190 chr1 177449720 177449899 -19745533 + L1MC LINE L1 3035 3183 -2963 7 1938 524 329 80 15 chr1 177449890 177450350 -19745082 + L1MC LINE L1 3077 3566 -2580 7 1938 1446 279 25 0 chr1 177450376 177450731 -19744701 + MTEa LTR MaLR 16 379 0 7 1938 228 171 24 0 chr1 177450735 177450776 -19744656 + L1MC LINE L1 3584 3625 -2521 7 1938 459 0 0 0 chr1 177450867 177450918 -19744514 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1938 396 0 0 0 chr1 177450918 177450961 -19744471 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1938 555 246 69 48 chr1 177451484 177451629 -19743803 - RSINE1 SINE B4 -15 150 3 7 1938 613 308 101 88 chr1 177451734 177452328 -19743104 + L1M5 LINE L1 3492 4093 -2053 7 1938 255 217 0 0 chr1 177454078 177454138 -19741294 + (CAT)n Simple_repeat Simple_repeat 3 62 0 7 1938 645 180 29 6 chr1 177455360 177455533 -19739899 + GA-rich Low_complexity Low_complexity 3 179 0 7 1938 239 15 0 130 chr1 177455533 177455610 -19739822 + (GGGAGA)n Simple_repeat Simple_repeat 2 68 0 7 1938 883 38 0 36 chr1 177455610 177455747 -19739685 + (GAA)n Simple_repeat Simple_repeat 1 132 0 7 1938 286 366 50 14 chr1 177455793 177456153 -19739279 + L1M5 LINE L1 5290 5662 -511 7 1938 352 252 215 7 chr1 177456252 177456396 -19739036 - MER20 DNA MER1_type -39 180 7 7 1938 432 0 0 0 chr1 177456814 177456862 -19738570 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1938 21 57 0 0 chr1 177457128 177457163 -19738269 + AT_rich Low_complexity Low_complexity 1 35 0 7 1938 271 325 50 33 chr1 177458000 177458121 -19737311 + PB1 SINE Alu 1 123 -4 7 1938 293 305 151 77 chr1 177458132 177458485 -19736947 + MLT1H1 LTR MaLR 22 388 -160 7 1938 403 349 82 19 chr1 177458550 177458807 -19736625 + B4A SINE B4 1 273 -19 7 1938 216 135 0 0 chr1 177458965 177459002 -19736430 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 7 1938 231 114 0 0 chr1 177459399 177459434 -19735998 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1938 390 302 133 55 chr1 177459733 177460080 -19735352 + LTR79 LTR ERVL 129 502 -25 7 1938 432 0 0 0 chr1 177460889 177460937 -19734495 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1938 327 216 13 51 chr1 177460971 177461049 -19734383 - B3A SINE B2 -119 79 5 7 1938 420 295 17 59 chr1 177461469 177461497 -19733935 + PB1D7 SINE Alu 1 27 -93 7 1938 2708 169 49 24 chr1 177461497 177462006 -19733426 - RLTR28 LTR ERVL 0 524 3 7 1938 420 295 17 59 chr1 177462006 177462096 -19733336 + PB1D7 SINE Alu 28 114 -6 7 1938 699 298 17 13 chr1 177462366 177462604 -19732828 - MER2 DNA MER2_type -26 319 81 7 1938 237 224 115 49 chr1 177462901 177462912 -19732520 + B4A SINE B4 81 95 -197 7 1938 279 259 111 0 chr1 177462912 177462993 -19732439 + B1_Mm SINE Alu 4 93 -54 7 1938 261 0 0 0 chr1 177463003 177463032 -19732400 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 7 1938 226 337 0 23 chr1 177463043 177463131 -19732301 + GA-rich Low_complexity Low_complexity 3 88 0 7 1938 387 0 0 0 chr1 177463301 177463344 -19732088 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1938 2078 156 94 6 chr1 177463850 177464192 -19731240 - ORR1D1 LTR MaLR -2 372 1 7 1938 226 197 61 0 chr1 177464388 177464454 -19730978 + (TATG)n Simple_repeat Simple_repeat 2 71 0 7 1938 277 199 25 35 chr1 177464507 177464706 -19730726 + (TG)n Simple_repeat Simple_repeat 1 196 0 7 1938 196 316 117 45 chr1 177464845 177465067 -19730365 - L3b LINE CR1 -232 250 13 7 1938 218 338 15 0 chr1 177465249 177465317 -19730115 - MER5B DNA MER1_type -34 144 76 7 1938 333 366 58 11 chr1 177465633 177465807 -19729625 + MLT1A1 LTR MaLR 19 200 -208 7 1938 471 161 21 21 chr1 177465803 177465898 -19729534 - MTE2b LTR MaLR -9 370 276 7 1938 226 308 0 0 chr1 177466014 177466066 -19729366 - PB1D10 SINE Alu -37 80 29 7 1938 225 371 60 8 chr1 177466130 177466247 -19729185 + L2b LINE L2 3215 3337 -38 7 1938 681 255 0 162 chr1 177466500 177466734 -19728698 + B3A SINE B2 3 198 0 7 1938 206 319 2 95 chr1 177466859 177466989 -19728443 + MIR SINE MIR 32 151 -57 7 1938 356 228 159 23 chr1 177467660 177467777 -19727655 + B1F1 SINE Alu 3 132 -15 7 1938 825 20 0 0 chr1 177468064 177468163 -19727269 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 1938 475 256 56 16 chr1 177468846 177469009 -19726423 + MLT2B4 LTR ERVL 5 174 -380 7 1938 2079 77 30 20 chr1 177469050 177469354 -19726078 - IAPLTR2b LTR ERVK -20 307 1 7 1938 651 210 0 0 chr1 177469383 177469559 -19725873 + CT-rich Low_complexity Low_complexity 2 177 0 7 1938 266 191 0 0 chr1 177469560 177469602 -19725830 + C-rich Low_complexity Low_complexity 6 47 0 7 1938 2040 125 16 9 chr1 177469750 177470066 -19725366 + ORR1A3 LTR MaLR 1 318 -8 7 1938 775 285 89 77 chr1 177470950 177471300 -19724132 + ORR1E LTR MaLR 1 354 -5 7 1939 948 264 52 113 chr1 177471757 177472120 -19723312 - MTE2a LTR MaLR -29 350 10 7 1939 258 136 0 0 chr1 177472618 177472662 -19722770 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 7 1939 1738 155 139 23 chr1 177472982 177473326 -19722106 + ORR1C2 LTR MaLR 1 384 0 7 1939 364 317 42 0 chr1 177473542 177473684 -19721748 + B1_Mus1 SINE Alu 1 148 0 7 1939 256 179 0 97 chr1 177473712 177473774 -19721658 + MLT1A LTR MaLR 65 120 -254 7 1939 371 267 44 0 chr1 177474301 177474391 -19721041 - RSINE1 SINE B4 -21 144 51 7 1939 976 287 111 9 chr1 177474415 177474759 -19720673 + MTD LTR MaLR 37 415 -4 7 1939 234 341 111 22 chr1 177475246 177475471 -19719961 - MLT1J-int LTR MaLR -1050 337 93 7 1939 790 169 81 46 chr1 177475566 177475740 -19719692 + B2_Mm2 SINE B2 1 180 -15 7 1939 22 0 0 0 chr1 177475746 177475768 -19719664 + GC_rich Low_complexity Low_complexity 1 22 0 7 1939 834 240 16 48 chr1 177476018 177476206 -19719226 + B4 SINE B4 105 286 -6 7 1939 986 259 28 10 chr1 177476505 177476794 -19718638 - RCHARR1 DNA MER1_type -1 973 680 7 1939 216 163 0 0 chr1 177476794 177476837 -19718595 + (TTG)n Simple_repeat Simple_repeat 1 43 0 7 1939 1293 243 325 14 chr1 177476837 177477344 -19718088 - RCHARR1 DNA MER1_type -291 683 19 7 1939 735 146 0 0 chr1 177477416 177477560 -19717872 + (TTGG)n Simple_repeat Simple_repeat 3 146 0 7 1939 438 258 31 0 chr1 177477566 177477663 -19717769 - PB1D10 SINE Alu -4 113 14 7 1939 613 287 94 77 chr1 177477751 177478091 -19717341 + Lx8 LINE L1 7122 7467 -6 7 1939 232 194 176 46 chr1 177478636 177478744 -19716688 + L2 LINE L2 2761 2882 -537 7 1939 199 54 26 26 chr1 177478971 177479009 -19716423 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 7 1939 189 292 0 58 chr1 177479009 177479078 -19716354 + MIRm SINE MIR 209 273 -3 7 1939 21 0 0 0 chr1 177479108 177479129 -19716303 + AT_rich Low_complexity Low_complexity 1 21 0 7 1939 289 241 152 0 chr1 177479216 177479289 -19716143 - MTE2a LTR MaLR -14 365 281 7 1939 4267 204 52 61 chr1 177479289 177480244 -19715188 + RMER21A LTR ERV1 1 947 0 7 1939 403 342 31 31 chr1 177480251 177480411 -19715021 - MTE2a LTR MaLR -91 288 129 7 1939 228 270 65 33 chr1 177481484 177481576 -19713856 + RMER2 LTR ERV1 462 556 -11 7 1939 408 40 0 0 chr1 177481662 177481712 -19713720 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1939 207 0 0 0 chr1 177481791 177481814 -19713618 + (CCA)n Simple_repeat Simple_repeat 2 24 0 7 1939 608 110 0 0 chr1 177481840 177481922 -19713510 - ETnERV2-int LTR ERVK -1660 5746 5665 7 1939 1203 297 88 30 chr1 177481922 177482547 -19712885 - L1MC2 LINE L1 -122 6222 5562 7 1939 803 115 8 0 chr1 177482548 177482678 -19712754 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 7 1939 396 0 0 0 chr1 177483398 177483442 -19711990 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1939 21 36 0 0 chr1 177483450 177483478 -19711954 + AT_rich Low_complexity Low_complexity 1 28 0 7 1939 397 265 36 0 chr1 177483860 177483943 -19711489 - B1F1 SINE Alu -63 86 1 7 1939 687 90 0 0 chr1 177483990 177484090 -19711342 + (TG)n Simple_repeat Simple_repeat 2 101 0 7 1939 760 242 149 7 chr1 177484094 177484422 -19711010 - L1MC2 LINE L1 -913 5431 5055 7 1939 1089 149 159 0 chr1 177484470 177484665 -19710767 - URR1A DNA MER1_type 0 226 1 7 1939 22 35 0 0 chr1 177485796 177485825 -19709607 + AT_rich Low_complexity Low_complexity 1 29 0 7 1939 712 326 58 57 chr1 177485961 177486559 -19708873 - L1ME1 LINE L1 -15 6164 5566 7 1939 236 296 53 53 chr1 177486556 177486706 -19708726 - L1ME1 LINE L1 -3152 2994 2845 7 1939 2576 314 81 31 chr1 177486697 177488008 -19707424 - Lx8 LINE L1 -534 6939 5532 7 1939 230 0 0 32 chr1 177488035 177488066 -19707366 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1939 485 268 43 7 chr1 177488066 177488205 -19707227 - L1M2 LINE L1 -1099 5044 4901 7 1939 2815 291 64 25 chr1 177488198 177489059 -19706373 - L1_Mur3 LINE L1 -578 5605 4659 7 1939 381 58 0 0 chr1 177489059 177489111 -19706321 + (CTTG)n Simple_repeat Simple_repeat 1 52 0 8 1939 2815 290 63 25 chr1 177489111 177489475 -19705957 - L1_Mur3 LINE L1 -1222 4658 4294 7 1939 2285 167 126 64 chr1 177489475 177490008 -19705424 - RMER4B LTR ERVK 0 585 21 8 1939 2079 147 28 9 chr1 177490008 177490331 -19705101 + ORR1A4 LTR MaLR 1 329 0 8 1939 2285 167 126 64 chr1 177490331 177490346 -19705086 - RMER4B LTR ERVK -565 20 5 8 1939 1334 232 56 34 chr1 177490346 177490792 -19704640 - L1_Mur3 LINE L1 -1580 4300 3845 7 1939 216 0 0 0 chr1 177490800 177490824 -19704608 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 8 1939 302 320 31 47 chr1 177490846 177490863 -19704569 - B1_Mm SINE Alu -21 126 113 8 1939 2930 47 6 25 chr1 177490863 177491216 -19704216 - ORR1A1 LTR MaLR 0 346 1 8 1939 363 280 64 27 chr1 177491216 177491326 -19704106 - B1F1 SINE Alu -35 114 1 8 1939 499 291 27 41 chr1 177491441 177491588 -19703844 - RSINE1 SINE B4 -13 152 8 8 1939 420 20 0 0 chr1 177491671 177491720 -19703712 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1939 546 16 0 0 chr1 177492048 177492111 -19703321 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 8 1939 734 245 0 6 chr1 177492114 177492274 -19703158 - MTEb LTR MaLR -218 161 3 8 1939 761 171 12 12 chr1 177493110 177493282 -19702150 + GA-rich Low_complexity Low_complexity 3 174 0 8 1939 181 320 61 20 chr1 177493358 177493457 -19701975 - L2a LINE L2 -3 3423 3321 8 1939 498 278 16 8 chr1 177494247 177494374 -19701058 - RSINE1 SINE B4 -1 164 37 8 1939 304 359 74 28 chr1 177495142 177495379 -19700053 - MLT1H LTR MaLR -258 291 1 8 1939 660 311 63 138 chr1 177496901 177497207 -19698225 + MLT1A1-int LTR MaLR 63 402 -1333 8 1939 604 283 75 6 chr1 177497207 177497367 -19698065 + B3A SINE B2 2 172 -26 8 1939 822 387 54 10 chr1 177497421 177497919 -19697513 + MLT1A1-int LTR MaLR 1033 1552 -183 8 1939 446 330 96 33 chr1 177498092 177498362 -19697070 + RMER15 LTR ERVL 273 559 -16 8 1939 456 130 0 0 chr1 177498412 177498504 -19696928 + (TG)n Simple_repeat Simple_repeat 2 93 0 8 1939 354 45 0 0 chr1 177498518 177498562 -19696870 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1939 750 188 0 8 chr1 177498612 177498741 -19696691 + B1_Mur4 SINE Alu 2 129 -21 8 1939 289 286 0 14 chr1 177498786 177498857 -19696575 + MLT1A1-int LTR MaLR 1666 1735 0 8 1939 301 304 66 38 chr1 177498857 177498962 -19696470 + MLT1A1 LTR MaLR 6 113 -252 8 1939 426 296 81 32 chr1 177498973 177499158 -19696274 + MLT1A1 LTR MaLR 215 408 0 8 1939 210 208 0 0 chr1 177499485 177499533 -19695899 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1939 472 301 28 14 chr1 177500000 177500145 -19695287 - ERVL-int LTR ERVL -759 4998 4852 1 1939 555 301 148 18 chr1 177501267 177501551 -19693881 - MLT2B1 LTR ERVL -199 321 1 2 1939 1320 251 81 7 chr1 177501564 177501982 -19693450 - ERVL-int LTR ERVL -13 5744 5296 2 1939 1082 314 64 43 chr1 177502015 177502531 -19692901 - ERVL-int LTR ERVL -2183 3574 3048 2 1939 408 242 22 11 chr1 177502536 177502628 -19692804 - ERVL-int LTR ERVL -2956 2758 2666 2 1939 522 326 53 71 chr1 177502882 177503301 -19692131 - MTE2a LTR MaLR -4 415 3 3 1939 342 0 0 0 chr1 177504159 177504197 -19691235 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1939 240 35 0 0 chr1 177504197 177504225 -19691207 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1939 4574 142 41 5 chr1 177504930 177505682 -19689750 - Lx4B LINE L1 -4 7054 6276 6 1939 373 320 142 46 chr1 177506327 177506409 -19689023 + MER92B LTR ERV1 98 180 -456 7 1939 828 292 55 14 chr1 177506409 177506756 -19688676 + MLT1A0 LTR MaLR 3 363 -2 8 1939 373 320 142 46 chr1 177506756 177506912 -19688520 + MER92B LTR ERV1 181 359 -277 7 1939 911 255 83 38 chr1 177507380 177507669 -19687763 + MTE2a LTR MaLR 63 364 -15 9 1939 261 0 0 0 chr1 177507679 177507708 -19687724 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1939 369 0 0 0 chr1 177507732 177507773 -19687659 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1939 2952 219 67 7 chr1 177507773 177508384 -19687048 + Lx5 LINE L1 6403 7050 0 1 1939 22 56 0 0 chr1 177508457 177508493 -19686939 + AT_rich Low_complexity Low_complexity 1 36 0 1 1939 23 33 0 0 chr1 177508521 177508551 -19686881 + AT_rich Low_complexity Low_complexity 1 30 0 1 1939 660 240 40 0 chr1 177509364 177509514 -19685918 + B3A SINE B2 4 159 -39 1 1939 369 62 0 0 chr1 177509514 177509562 -19685870 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1939 408 71 0 0 chr1 177509587 177509643 -19685789 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 1 1939 335 329 54 7 chr1 177510852 177510999 -19684433 - MIR3 SINE MIR -36 172 19 1 1939 3671 60 27 2 chr1 177511201 177511726 -19683706 - L1_Mus1 LINE L1 -504 6063 5526 1 1939 2885 70 0 3 chr1 177511729 177512104 -19683328 + L1_Mus1 LINE L1 6194 6567 0 1 1939 605 299 57 16 chr1 177512143 177512391 -19683041 + Lx8 LINE L1 6767 7024 -449 2 1939 445 174 10 10 chr1 177512495 177512594 -19682838 + GA-rich Low_complexity Low_complexity 3 101 0 2 1939 1456 22 0 11 chr1 177512595 177512777 -19682655 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1939 21 0 0 0 chr1 177512881 177512902 -19682530 + AT_rich Low_complexity Low_complexity 1 21 0 2 1939 200 34 0 33 chr1 177512902 177512932 -19682500 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1939 3534 108 67 2 chr1 177513412 177513931 -19681501 + Lx2B LINE L1 6448 7000 0 2 1939 325 305 175 26 chr1 177514204 177514473 -19680959 - MT2A LTR ERVL -162 371 63 2 1939 279 269 11 21 chr1 177514413 177514508 -19680924 - MTD LTR MaLR -266 153 60 2 1939 333 183 0 0 chr1 177514517 177514577 -19680855 - RSINE1 SINE B4 -103 62 3 2 1939 2265 88 55 0 chr1 177514680 177514987 -19680445 - ORR1A2 LTR MaLR 0 327 4 2 1939 261 270 0 0 chr1 177515197 177515286 -19680146 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 1939 577 253 81 12 chr1 177515948 177516120 -19679312 + MTE2a LTR MaLR 195 378 -1 3 1939 222 118 0 0 chr1 177516521 177516555 -19678877 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1939 401 209 17 110 chr1 177518210 177518328 -19677104 - PB1D7 SINE Alu -1 119 13 3 1939 513 84 0 0 chr1 177518558 177518629 -19676803 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 3 1939 26 0 0 0 chr1 177519277 177519303 -19676129 + AT_rich Low_complexity Low_complexity 1 26 0 3 1939 1481 289 109 14 chr1 177519437 177519942 -19675490 - Lx8 LINE L1 -357 7116 6564 3 1939 444 269 0 0 chr1 177519943 177520051 -19675381 - PB1D10 SINE Alu -8 109 2 3 1939 239 340 116 69 chr1 177520057 177520360 -19675072 + LTR55 LTR ERV 56 372 -176 3 1939 1101 200 125 14 chr1 177521070 177521359 -19674073 - MTEa LTR MaLR -56 323 3 3 1939 536 311 7 13 chr1 177521416 177521569 -19673863 + MTD LTR MaLR 19 170 -249 4 1939 489 252 64 7 chr1 177521567 177521707 -19673725 + MTD LTR MaLR 272 419 0 4 1939 419 284 119 15 chr1 177521715 177521980 -19673452 + L1MC4a LINE L1 7076 7486 -509 4 1939 604 305 10 10 chr1 177522419 177522621 -19672811 + L1MC4a LINE L1 7681 7882 0 4 1939 209 222 0 0 chr1 177522750 177522795 -19672637 + A-rich Low_complexity Low_complexity 1 45 0 4 1939 714 243 56 39 chr1 177523271 177523607 -19671825 - ORR1E LTR MaLR -3 376 1 4 1939 326 333 13 51 chr1 177523694 177523852 -19671580 + LTR31 LTR ERV1 274 425 -194 4 1939 262 274 52 21 chr1 177523933 177524030 -19671402 - MTE2b LTR MaLR -256 123 24 4 1939 1155 299 39 10 chr1 177524041 177524525 -19670907 + L1M2 LINE L1 4867 5364 -779 4 1939 424 129 48 19 chr1 177524525 177524628 -19670804 + L1_Mus4 LINE L1 6531 6636 0 4 1939 851 311 65 34 chr1 177524628 177524695 -19670737 + L1_Mur3 LINE L1 5334 5404 -476 4 1939 493 285 39 110 chr1 177524701 177524855 -19670577 + RSINE1 SINE B4 15 157 -8 4 1939 470 244 0 6 chr1 177524871 177525028 -19670404 + (CA)n Simple_repeat Simple_repeat 1 156 0 5 1939 891 280 31 28 chr1 177525090 177525413 -19670019 + L1M2 LINE L1 5438 5761 -539 4 1939 1067 260 107 67 chr1 177525413 177526157 -19669275 - MTD-int LTR MaLR -282 816 1 5 1939 1247 234 128 13 chr1 177526157 177526533 -19668899 - MTD LTR MaLR 0 419 1 5 1939 216 103 26 0 chr1 177526799 177526838 -19668594 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1939 845 123 29 8 chr1 177526847 177526999 -19668433 - B1_Mus1 SINE Alu 0 148 1 5 1939 341 250 35 9 chr1 177528539 177528652 -19666780 - PB1D9 SINE Alu 0 120 5 5 1939 283 258 226 0 chr1 177528763 177528887 -19666545 - MER20 DNA MER1_type -30 189 38 5 1939 304 233 27 0 chr1 177529380 177529453 -19665979 + ID4_ SINE ID 6 80 -3 5 1939 1005 220 24 5 chr1 177529483 177529693 -19665739 + B3 SINE B2 3 216 0 5 1939 476 59 15 0 chr1 177530151 177530219 -19665213 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1939 225 0 0 0 chr1 177530219 177530243 -19665189 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1939 5543 119 31 5 chr1 177530652 177531485 -19663947 + Lx4A LINE L1 6204 7058 0 6 1939 22 0 0 0 chr1 177531528 177531550 -19663882 + AT_rich Low_complexity Low_complexity 1 22 0 6 1939 342 79 31 16 chr1 177531940 177532004 -19663428 + (GAGAA)n Simple_repeat Simple_repeat 4 68 0 6 1939 263 194 234 11 chr1 177532275 177532369 -19663063 + PB1D10 SINE Alu 3 117 0 6 1939 594 103 0 0 chr1 177533125 177533212 -19662220 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 6 1939 390 275 21 28 chr1 177533763 177533905 -19661527 + RSINE1 SINE B4 1 141 -24 6 1939 219 157 0 0 chr1 177533932 177533983 -19661449 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1939 347 287 42 49 chr1 177536423 177536453 -19658979 + ID_B1 SINE B4 76 217 -7 6 1939 366 259 71 9 chr1 177536453 177536566 -19658866 + B1F SINE Alu 23 142 -7 6 1939 287 304 0 12 chr1 177536578 177536658 -19658774 + ID4_ SINE ID 5 83 0 6 1939 343 350 42 7 chr1 177537032 177537176 -19658256 - B1F SINE Alu 0 149 1 7 1939 230 295 74 37 chr1 177537342 177537504 -19657928 - L3 LINE CR1 -770 3719 3552 7 1939 1264 47 0 0 chr1 177538677 177538825 -19656607 + B1_Mus1 SINE Alu 1 148 0 7 1939 357 276 65 0 chr1 177538885 177539008 -19656424 + Lx8 LINE L1 6944 7074 -399 7 1939 465 260 268 51 chr1 177539029 177539264 -19656168 + Lx8 LINE L1 7180 7465 -8 7 1939 1066 82 7 7 chr1 177541230 177541377 -19654055 - B1_Mus2 SINE Alu 0 147 1 7 1939 257 292 26 86 chr1 177541810 177541926 -19653506 - MIR SINE MIR -78 130 22 7 1939 878 152 7 20 chr1 177541960 177542108 -19653324 + B1_Mus2 SINE Alu 2 147 0 7 1939 21 0 0 0 chr1 177543217 177543238 -19652194 + AT_rich Low_complexity Low_complexity 1 21 0 7 1939 425 273 92 104 chr1 177543238 177543565 -19651867 + L1MC4a LINE L1 6810 7132 -750 7 1939 1422 76 38 0 chr1 177543573 177543757 -19651675 + B2_Mm2 SINE B2 5 195 0 7 1939 766 131 29 0 chr1 177543797 177543934 -19651498 + B1_Mur3 SINE Alu 9 149 0 8 1939 264 356 45 0 chr1 177548051 177548183 -19647249 + MER104 DNA Tc2 44 181 0 8 1939 180 0 0 0 chr1 177548406 177548426 -19647006 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1939 2051 182 42 13 chr1 177548445 177548896 -19646536 + MT2A LTR ERVL 12 475 -58 8 1939 247 193 0 0 chr1 177548896 177548953 -19646479 + CT-rich Low_complexity Low_complexity 2 58 0 8 1939 316 132 44 0 chr1 177549560 177549628 -19645804 + GA-rich Low_complexity Low_complexity 1 71 0 8 1939 4067 159 108 12 chr1 177549753 177550576 -19644856 + RMER19B LTR ERVK 1 902 0 8 1939 258 197 55 27 chr1 177550737 177550810 -19644622 - Charlie4z DNA MER1_type -16 151 77 8 1939 235 330 110 0 chr1 177551292 177551401 -19644031 + B4A SINE B4 94 214 -78 8 1939 33 0 0 0 chr1 177551797 177551830 -19643602 + AT_rich Low_complexity Low_complexity 1 33 0 8 1939 1317 77 72 0 chr1 177551903 177552084 -19643348 + B2_Mm2 SINE B2 1 194 -1 9 1939 258 304 69 69 chr1 177553031 177553176 -19642256 + MTE2b LTR MaLR 1 145 -234 9 1939 229 273 0 0 chr1 177553186 177553241 -19642191 + Lx9 LINE L1 7386 7440 -204 9 1939 653 247 90 0 chr1 177553277 177553443 -19641989 + ORR1D2 LTR MaLR 1 181 -189 9 1939 431 110 41 0 chr1 177553442 177553515 -19641917 + ORR1D2 LTR MaLR 299 374 0 9 1939 308 211 136 16 chr1 177553520 177553645 -19641787 + Lx9 LINE L1 7505 7644 0 9 1939 487 218 55 98 chr1 177553664 177553827 -19641605 + MTE2b LTR MaLR 176 331 -48 9 1939 346 314 0 28 chr1 177554400 177554508 -19640924 - B3A SINE B2 -16 182 78 9 1939 1157 106 44 22 chr1 177556220 177556403 -19639029 - B2_Mm2 SINE B2 -6 189 3 9 1939 236 293 36 12 chr1 177556638 177556721 -19638711 + PB1D10 SINE Alu 24 108 -9 9 1939 547 239 0 0 chr1 177556732 177556849 -19638583 + ID_B1 SINE B4 103 219 -5 9 1939 996 123 3 0 chr1 177557127 177557477 -19637955 + (TG)n Simple_repeat Simple_repeat 1 351 0 9 1939 360 256 158 85 chr1 177557501 177557911 -19637521 - RMER10A LTR ERVL 0 442 3 1 1939 614 246 0 14 chr1 177558177 177558325 -19637107 + B1_Mur2 SINE Alu 3 148 -1 1 1939 242 354 115 0 chr1 177558487 177558600 -19636832 - RSINE1 SINE B4 -22 143 18 1 1939 368 278 82 0 chr1 177558887 177558984 -19636448 - PB1D10 SINE Alu 0 117 13 1 1939 193 217 45 57 chr1 177558984 177559072 -19636360 - MIR SINE MIR -56 206 120 1 1939 193 28 53 53 chr1 177559779 177559817 -19635615 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1939 2066 65 34 0 chr1 177560024 177560318 -19635114 - ORR1A2 LTR MaLR -8 319 16 1 1939 778 249 17 0 chr1 177560355 177560532 -19634900 + B3A SINE B2 1 180 -18 1 1939 212 212 0 15 chr1 177561191 177561258 -19634174 + GA-rich Low_complexity Low_complexity 3 68 0 1 1939 21 0 0 0 chr1 177562438 177562459 -19632973 + AT_rich Low_complexity Low_complexity 1 21 0 1 1939 303 28 0 0 chr1 177562732 177562768 -19632664 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1939 189 0 0 0 chr1 177562768 177562788 -19632644 + (CG)n Simple_repeat Simple_repeat 1 21 0 1 1939 425 253 20 147 chr1 177562790 177562994 -19632438 - L1MA5 LINE L1 -364 5936 5759 1 1939 260 0 0 54 chr1 177563284 177563321 -19632111 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1939 260 319 32 0 chr1 177563747 177563841 -19631591 + PB1D10 SINE Alu 4 100 -17 1 1939 393 216 61 10 chr1 177564551 177564649 -19630783 + PB1D10 SINE Alu 2 104 -13 1 1939 207 0 0 0 chr1 177564649 177564672 -19630760 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1 1939 466 277 51 6 chr1 177565616 177565866 -19629566 - L1MA4 LINE L1 -1479 5994 5722 1 1939 486 0 134 0 chr1 177565891 177566025 -19629407 + (TCCC)n Simple_repeat Simple_repeat 4 155 0 1 1939 303 354 6 64 chr1 177566889 177567061 -19628371 - L1M5 LINE L1 -438 5802 5641 1 1939 1110 140 0 0 chr1 177568150 177568460 -19626972 + (TG)n Simple_repeat Simple_repeat 1 310 0 1 1939 406 250 32 24 chr1 177568706 177568829 -19626603 - MTD LTR MaLR -14 405 282 1 1939 344 244 0 13 chr1 177571166 177571245 -19624187 + B4A SINE B4 1 78 -214 1 1939 734 238 7 0 chr1 177571247 177571398 -19624034 + B3A SINE B2 5 156 -42 1 1939 324 48 0 0 chr1 177571400 177571442 -19623990 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1939 369 0 0 0 chr1 177571442 177571482 -19623950 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1939 487 259 83 60 chr1 177571504 177571722 -19623710 + B4A SINE B4 68 290 -2 1 1939 918 153 0 0 chr1 177572775 177572919 -19622513 - B1_Mur4 SINE Alu -2 148 5 1 1939 3608 187 81 14 chr1 177574521 177575302 -19620130 - Lx9 LINE L1 -8 7636 6804 1 1939 299 330 91 30 chr1 177575578 177575775 -19619657 - MIRb SINE MIR -35 233 25 1 1939 21 0 0 0 chr1 177575835 177575856 -19619576 + AT_rich Low_complexity Low_complexity 1 21 0 1 1939 396 0 0 0 chr1 177575939 177575983 -19619449 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1939 511 228 0 0 chr1 177576534 177576635 -19618797 - PB1D10 SINE Alu -11 106 6 1 1939 357 228 121 38 chr1 177576989 177577121 -19618311 + B1F SINE Alu 6 148 -1 1 1939 351 167 0 0 chr1 177578280 177578370 -19617062 + T-rich Low_complexity Low_complexity 1 90 0 1 1939 1153 68 7 0 chr1 177578372 177578518 -19616914 - B1_Mm SINE Alu 0 147 1 1 1939 371 301 97 0 chr1 177578679 177578792 -19616640 + MER2B DNA MER2_type 188 311 -25 1 1939 184 114 22 43 chr1 177579232 177579278 -19616154 + T-rich Low_complexity Low_complexity 2 46 0 1 1939 3471 58 2 18 chr1 177579452 177579905 -19615527 + L1_Mus2 LINE L1 6121 6566 0 1 1939 362 272 39 59 chr1 177579913 177580133 -19615299 + L1MA4 LINE L1 5815 6015 -282 1 1939 186 197 26 26 chr1 177580367 177580445 -19614987 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 1 1939 443 140 64 0 chr1 177580789 177580946 -19614486 + (TA)n Simple_repeat Simple_repeat 1 167 0 1 1939 483 18 0 0 chr1 177581254 177581310 -19614122 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1939 275 280 32 0 chr1 177582024 177582117 -19613315 - MLT1A0 LTR MaLR -267 98 3 1 1939 3552 42 28 5 chr1 177582612 177583038 -19612394 - RLTR10C LTR ERVK 0 436 1 1 1939 247 247 18 46 chr1 177583160 177583239 -19612193 - B4A SINE B4 -126 166 89 1 1939 362 342 18 0 chr1 177583250 177583361 -19612071 - B4A SINE B4 -179 113 1 1 1939 200 128 0 25 chr1 177583516 177583556 -19611876 + T-rich Low_complexity Low_complexity 2 40 0 1 1939 210 364 0 13 chr1 177584759 177584837 -19610595 - ID4_ SINE ID -2 81 5 1 1939 898 286 30 27 chr1 177585994 177586323 -19609109 - MTEb LTR MaLR -43 336 2 1 1939 26 74 0 0 chr1 177586535 177586589 -19608843 + AT_rich Low_complexity Low_complexity 1 54 0 1 1939 669 183 35 14 chr1 177586648 177586792 -19608640 - B3 SINE B2 -66 150 4 1 1939 292 280 0 0 chr1 177587048 177587123 -19608309 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1939 343 283 99 16 chr1 177587833 177587945 -19607487 + B4A SINE B4 175 288 -4 1 1939 183 156 0 0 chr1 177587997 177588029 -19607403 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1939 255 258 126 58 chr1 177589571 177589674 -19605758 + B4A SINE B4 2 111 -181 1 1939 352 227 0 13 chr1 177590880 177590970 -19604462 + ID4 SINE ID 3 91 -61 1 1939 1384 83 16 10 chr1 177590990 177591184 -19604248 - B2_Mm2 SINE B2 0 195 1 1 1939 226 212 12 24 chr1 177591186 177591268 -19604164 + (TTTA)n Simple_repeat Simple_repeat 4 84 0 1 1939 243 287 11 44 chr1 177591289 177591377 -19604055 - MER34A1 LTR ERV1 -73 514 430 1 1939 640 249 40 0 chr1 177591377 177591550 -19603882 + B3A SINE B2 2 181 -17 1 1939 305 172 90 10 chr1 177591579 177591679 -19603753 + Lx9 LINE L1 7536 7643 -1 1 1939 247 245 97 35 chr1 177591884 177591998 -19603434 - MER34A1 LTR ERV1 -466 121 1 1 1939 669 237 15 0 chr1 177592085 177592216 -19603216 + RSINE1 SINE B4 2 134 -31 1 1939 378 0 0 0 chr1 177593327 177593369 -19602063 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1939 554 252 57 14 chr1 177593378 177593519 -19601913 - B3A SINE B2 -46 152 6 1 1939 324 0 0 0 chr1 177594132 177594168 -19601264 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1939 310 332 144 98 chr1 177594256 177594520 -19600912 - B4A SINE B4 -16 276 1 1 1939 269 328 44 89 chr1 177596048 177596262 -19599170 + MTEa LTR MaLR 167 358 -21 1 1939 30 59 0 0 chr1 177596935 177596986 -19598446 + AT_rich Low_complexity Low_complexity 1 51 0 1 1939 477 275 248 4 chr1 177597595 177597825 -19597607 + B4 SINE B4 2 287 -5 1 1939 1728 109 46 62 chr1 177598084 177598408 -19597024 + ORR1A2 LTR MaLR 1 319 -8 1 1939 2784 150 94 0 chr1 177598763 177599229 -19596203 - Lx LINE L1 0 6654 6145 1 1939 300 254 0 0 chr1 177600350 177600413 -19595019 - RSINE1 SINE B4 -99 66 4 1 1939 494 269 132 70 chr1 177600997 177601269 -19594163 + B4 SINE B4 2 290 -2 1 1939 208 233 0 0 chr1 177601274 177601317 -19594115 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 1939 311 78 0 19 chr1 177601660 177601712 -19593720 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1939 192 77 0 0 chr1 177602459 177602485 -19592947 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1940 754 255 75 15 chr1 177603569 177603768 -19591664 + B3 SINE B2 1 211 -5 1 1940 206 121 0 0 chr1 177607340 177607373 -19588059 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1940 279 308 52 45 chr1 177608305 177608522 -19586910 + MIR SINE MIR 34 249 -19 1 1940 277 292 122 41 chr1 177609299 177609495 -19585937 - MER20 DNA MER1_type -7 212 1 1 1940 442 268 87 0 chr1 177609851 177609978 -19585454 + ID_B1 SINE B4 87 224 0 1 1940 637 219 127 44 chr1 177610757 177610962 -19584470 + ID_B1 SINE B4 1 222 -2 1 1940 305 297 11 0 chr1 177610991 177611082 -19584350 + RSINE1 SINE B4 4 95 -70 1 1940 24 0 0 0 chr1 177611480 177611504 -19583928 + GC_rich Low_complexity Low_complexity 1 24 0 1 1940 388 244 21 12 chr1 177611994 177612111 -19583321 - B1F SINE Alu -6 114 2 1 1940 260 245 8 109 chr1 177612016 177612135 -19583297 - MT2B2 LTR ERVL -334 250 144 1 1940 788 131 31 0 chr1 177613046 177613176 -19582256 + B1_Mur3 SINE Alu 15 148 -1 1 1940 201 335 131 24 chr1 177613701 177613869 -19581563 - MIRb SINE MIR -1 267 82 1 1940 201 175 0 0 chr1 177614021 177614061 -19581371 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1940 297 0 0 0 chr1 177614848 177614881 -19580551 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1940 508 205 35 26 chr1 177615716 177615831 -19579601 - PB1D7 SINE Alu -2 118 3 1 1940 22 0 0 0 chr1 177616167 177616189 -19579243 + AT_rich Low_complexity Low_complexity 1 22 0 1 1940 37 39 0 0 chr1 177619041 177619092 -19576340 + AT_rich Low_complexity Low_complexity 1 51 0 1 1940 706 119 79 0 chr1 177624642 177624768 -19570664 - ORR1A2 LTR MaLR -191 136 1 1 1940 269 247 25 25 chr1 177625217 177625296 -19570136 + ORR1D1 LTR MaLR 2 80 -294 1 1940 188 149 0 21 chr1 177625548 177625596 -19569836 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1940 1269 208 159 9 chr1 177625599 177625914 -19569518 + MTD LTR MaLR 21 382 -37 1 1940 394 280 0 17 chr1 177626011 177626131 -19569301 + MLT1A1 LTR MaLR 290 407 -1 1 1940 885 234 219 28 chr1 177626290 177626777 -19568655 - RMER4B LTR ERVK -4 581 1 1 1940 330 214 170 20 chr1 177626777 177626876 -19568556 - B3A SINE B2 -66 132 19 1 1940 195 352 88 0 chr1 177627005 177627130 -19568302 + L2a LINE L2 3000 3135 -291 2 1940 234 0 0 0 chr1 177627153 177627179 -19568253 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1940 234 291 61 37 chr1 177627286 177627368 -19568064 + L2a LINE L2 3343 3426 0 2 1940 700 348 28 17 chr1 177627728 177628015 -19567417 + B4A SINE B4 1 290 -2 2 1940 401 53 0 18 chr1 177628242 177628299 -19567133 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 2 1940 321 26 0 0 chr1 177628543 177628581 -19566851 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1940 307 210 160 0 chr1 177630000 177630100 -19565332 - PB1D10 SINE Alu -1 116 1 2 1940 297 167 0 0 chr1 177630234 177630288 -19565144 + T-rich Low_complexity Low_complexity 1 54 0 2 1940 281 187 105 13 chr1 177630851 177630927 -19564505 + RMER5 LTR ERV1 193 275 -259 2 1940 258 32 0 0 chr1 177630999 177631030 -19564402 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1940 530 210 67 8 chr1 177631053 177631173 -19564259 + RMER5 LTR ERV1 408 534 0 2 1940 526 254 71 77 chr1 177632102 177632285 -19563147 - MER20 DNA MER1_type -1 218 37 2 1940 423 0 0 0 chr1 177632285 177632332 -19563100 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1940 731 330 138 23 chr1 177632337 177632728 -19562704 - Lx9 LINE L1 -841 6803 6368 2 1940 5289 243 64 65 chr1 177632751 177634611 -19560821 - L1_Rod LINE L1 -216 5631 3774 2 1940 1205 253 80 24 chr1 177634612 177635062 -19560370 - RMER5 LTR ERV1 -20 514 40 2 1940 405 39 0 0 chr1 177635094 177635145 -19560287 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1940 1237 41 0 0 chr1 177635255 177635401 -19560031 - B1_Mm SINE Alu 0 147 2 2 1940 24 32 0 0 chr1 177635415 177635446 -19559986 + AT_rich Low_complexity Low_complexity 1 31 0 2 1940 278 241 7 0 chr1 177635561 177635706 -19559726 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 1940 490 189 0 59 chr1 177636413 177636514 -19558918 - B1_Mur1 SINE Alu -5 144 50 2 1940 286 347 14 14 chr1 177637875 177638021 -19557411 + MER58B DNA MER1_type 193 338 -3 2 1940 417 39 0 0 chr1 177638095 177638146 -19557286 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1940 337 343 40 80 chr1 177638239 177638464 -19556968 - MLT1E2 LTR MaLR -25 602 387 2 1940 496 29 29 0 chr1 177638466 177638536 -19556896 + (CAAAA)n Simple_repeat Simple_repeat 5 76 0 2 1940 923 89 0 7 chr1 177638908 177639044 -19556388 + (TTC)n Simple_repeat Simple_repeat 1 135 0 2 1940 477 268 110 16 chr1 177639268 177639450 -19555982 + RMER30 DNA MER1_type 4 202 0 2 1940 239 55 55 18 chr1 177639692 177639747 -19555685 + (TTG)n Simple_repeat Simple_repeat 1 57 0 2 1940 387 0 0 0 chr1 177640002 177640045 -19555387 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1940 393 279 59 33 chr1 177640187 177640339 -19555093 + MER33 DNA MER1_type 28 183 -141 2 1940 279 242 63 0 chr1 177640355 177640450 -19554982 + MER33 DNA MER1_type 222 322 -2 2 1940 1367 98 0 20 chr1 177640604 177640802 -19554630 - B2_Mm2 SINE B2 0 195 2 2 1940 184 286 100 20 chr1 177641428 177641528 -19553904 - MIR SINE MIR -74 134 27 2 1940 223 251 10 32 chr1 177641741 177641808 -19553624 + MIRc SINE MIR 109 181 -95 2 1940 477 246 161 58 chr1 177642212 177642337 -19553095 + ORR1E LTR MaLR 1 158 -201 2 1940 270 0 0 0 chr1 177642337 177642367 -19553065 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1940 477 263 140 54 chr1 177642367 177642497 -19552935 + ORR1E LTR MaLR 141 272 -98 2 1940 3720 194 72 36 chr1 177642514 177643386 -19552046 - RMER13B LTR ERVK 0 908 5 2 1940 440 179 12 0 chr1 177643397 177643481 -19551951 + ORR1E LTR MaLR 293 377 -2 2 1940 2514 136 51 53 chr1 177643717 177644229 -19551203 + RLTR28 LTR ERVL 14 524 0 2 1940 291 327 17 33 chr1 177645295 177645445 -19549987 - MIRc SINE MIR -93 183 34 2 1940 234 303 9 60 chr1 177645832 177645948 -19549484 + MLT1D LTR MaLR 65 174 -450 2 1940 402 326 36 87 chr1 177645915 177646331 -19549101 + MLT1D LTR MaLR 111 505 0 2 1940 660 250 81 27 chr1 177646342 177646564 -19548868 + B4A SINE B4 3 236 -56 2 1940 333 330 71 0 chr1 177646703 177646815 -19548617 - PB1 SINE Alu -7 120 1 2 1940 342 23 0 0 chr1 177648083 177648127 -19547305 - ORR1B1 LTR MaLR -4 390 347 2 1940 5381 133 11 14 chr1 177648127 177648983 -19546449 + Lx LINE L1 5802 6654 0 2 1940 810 116 27 0 chr1 177648985 177649131 -19546301 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 2 1940 1188 152 8 108 chr1 177649133 177649392 -19546040 - ORR1B1 LTR MaLR -57 337 105 2 1940 714 180 24 47 chr1 177649400 177649569 -19545863 + RLTR20A1 LTR ERVK 387 551 0 2 1940 376 275 0 52 chr1 177649781 177649877 -19545555 + B1F1 SINE Alu 28 118 -31 2 1940 741 133 78 8 chr1 177650871 177651000 -19544432 + B1_Mur4 SINE Alu 2 139 -11 2 1940 296 0 0 49 chr1 177651000 177651041 -19544391 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1940 194 62 0 30 chr1 177651182 177651215 -19544217 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1940 1017 113 0 7 chr1 177651225 177651367 -19544065 - B1_Mus1 SINE Alu -7 141 1 2 1940 1432 70 5 5 chr1 177651903 177652089 -19543343 + B2_Mm2 SINE B2 1 186 -9 2 1940 1050 69 0 0 chr1 177652528 177652672 -19542760 + (GGGAA)n Simple_repeat Simple_repeat 2 145 0 2 1940 528 295 43 120 chr1 177652729 177652987 -19542445 + B4A SINE B4 35 272 -20 2 1940 1107 259 35 19 chr1 177653316 177653631 -19541801 - MTE2a LTR MaLR 0 379 60 2 1940 890 179 0 64 chr1 177653666 177653869 -19541563 + URR1A DNA MER1_type 35 224 -2 2 1940 389 292 62 82 chr1 177654939 177655256 -19540176 + B4 SINE B4 2 280 -12 2 1940 240 342 0 13 chr1 177656412 177656489 -19538943 - ID4 SINE ID -7 76 1 2 1940 237 348 0 25 chr1 177657577 177657695 -19537737 + CT-rich Low_complexity Low_complexity 5 119 0 2 1940 245 286 0 28 chr1 177657621 177657693 -19537739 + C-rich Low_complexity Low_complexity 6 75 0 2 1940 505 322 13 19 chr1 177658316 177658471 -19536961 + ID_B1 SINE B4 34 187 -37 2 1940 423 0 0 0 chr1 177658746 177658793 -19536639 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1940 283 232 0 0 chr1 177658794 177658850 -19536582 - tRNA-Ala-GCY_ tRNA tRNA -9 66 11 2 1940 269 309 0 0 chr1 177658850 177658862 -19536570 - ID4 SINE ID -11 72 5 2 1940 646 229 20 48 chr1 177659267 177659414 -19536018 + B1F1 SINE Alu 7 149 0 2 1940 615 314 12 0 chr1 177659864 177660033 -19535399 + B3A SINE B2 4 174 -24 2 1940 441 223 9 19 chr1 177660941 177661046 -19534386 - MTEa LTR MaLR -2 377 274 2 1940 528 271 196 9 chr1 177661128 177661348 -19534084 - MTEa LTR MaLR -97 282 22 2 1940 27 0 0 0 chr1 177661403 177661430 -19534002 + AT_rich Low_complexity Low_complexity 1 27 0 2 1940 316 259 24 24 chr1 177661977 177662060 -19533372 + ID4_ SINE ID 1 83 0 2 1940 1202 62 0 0 chr1 177662349 177662495 -19532937 - B1_Mm SINE Alu 0 147 2 2 1940 418 288 85 1 chr1 177662523 177662679 -19532753 + L1MB7 LINE L1 5838 6003 -175 2 1940 643 209 216 34 chr1 177662719 177662927 -19532505 - MTD LTR MaLR 0 419 174 2 1940 379 213 170 0 chr1 177663097 177663191 -19532241 + MTD LTR MaLR 1 110 -309 2 1940 276 170 0 0 chr1 177663196 177663249 -19532183 + CT-rich Low_complexity Low_complexity 1 53 0 2 1940 282 227 0 0 chr1 177663374 177663449 -19531983 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1940 355 281 70 56 chr1 177663546 177663689 -19531743 + ID_B1 SINE B4 80 224 0 2 1940 485 288 59 23 chr1 177663702 177663884 -19531548 + L1MCa LINE L1 1632 1821 -4687 2 1940 1041 102 155 6 chr1 177663884 177664052 -19531380 - B2_Mm2 SINE B2 -1 194 2 2 1940 485 288 59 23 chr1 177664052 177664089 -19531343 + L1MCa LINE L1 1822 1858 -4650 2 1940 329 326 44 9 chr1 177664416 177664642 -19530790 + L1MCa LINE L1 2165 2398 -4110 2 1940 1095 86 141 0 chr1 177664684 177664847 -19530585 + B2_Mm2 SINE B2 1 186 -9 2 1940 339 236 98 12 chr1 177666080 177666161 -19529271 + MER63D DNA AcHobo 55 139 -922 2 1940 258 32 0 0 chr1 177666161 177666192 -19529240 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1940 339 236 98 12 chr1 177666192 177666273 -19529159 + MER63D DNA AcHobo 140 231 -830 2 1940 437 281 65 92 chr1 177666842 177667026 -19528406 - MTE2a LTR MaLR -200 179 1 2 1940 363 315 81 0 chr1 177667681 177667792 -19527640 - B1F SINE Alu -29 120 1 2 1940 573 254 48 48 chr1 177669468 177669654 -19525778 - B2_Mm2 SINE B2 -9 186 1 2 1940 654 161 142 30 chr1 177669988 177670122 -19525310 - B1_Mur2 SINE Alu 0 149 1 2 1940 356 56 37 0 chr1 177670203 177670257 -19525175 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 2 1940 5244 188 68 31 chr1 177670258 177671379 -19524053 + Lx9 LINE L1 6482 7643 -1 2 1940 282 269 40 10 chr1 177671391 177671470 -19523962 - L2b LINE L2 -90 3336 3224 2 1940 399 73 0 0 chr1 177671788 177671843 -19523589 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1940 227 135 27 0 chr1 177672837 177672874 -19522558 + MIRm SINE MIR 124 161 -115 2 1940 284 348 0 0 chr1 177673073 177673165 -19522267 + MER58B DNA MER1_type 1 92 -249 2 1940 244 250 41 52 chr1 177673162 177673259 -19522173 - ORR1E LTR MaLR -4 375 280 2 1940 3560 155 18 24 chr1 177673912 177674354 -19521078 + Lx9 LINE L1 6854 7295 -349 2 1940 3259 63 13 0 chr1 177674354 177674749 -19520683 - MTB LTR MaLR 0 400 1 2 1940 3560 155 18 24 chr1 177674749 177674922 -19520510 + Lx9 LINE L1 7296 7465 -179 2 1940 237 65 0 0 chr1 177674922 177674953 -19520479 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1940 250 135 19 0 chr1 177674961 177675013 -19520419 + Lx9 LINE L1 7591 7643 -1 2 1940 324 319 129 14 chr1 177675388 177675598 -19519834 + MIR SINE MIR 22 255 -7 2 1940 758 253 6 36 chr1 177675602 177675770 -19519662 + RSINE1 SINE B4 2 164 -1 2 1940 1646 138 22 11 chr1 177675916 177676186 -19519246 + ORR1B2 LTR MaLR 87 359 -8 2 1940 1344 29 23 11 chr1 177676700 177676874 -19518558 - B2_Mm2 SINE B2 -4 191 16 2 1940 232 212 28 83 chr1 177676811 177676883 -19518549 - ID4 SINE ID -6 77 10 2 1940 437 289 131 135 chr1 177677109 177677421 -19518011 - ORR1E LTR MaLR -48 311 1 2 1940 2280 117 58 48 chr1 177679003 177679397 -19516035 + RLTR26 LTR ERVK 1 398 -244 2 1940 883 57 57 0 chr1 177679396 177679519 -19515913 + B1_Mus1 SINE Alu 13 142 -6 2 1940 380 37 0 18 chr1 177679521 177679576 -19515856 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 2 1940 1282 148 22 90 chr1 177679601 177679869 -19515563 + RLTR26 LTR ERVK 393 642 0 2 1940 347 365 15 20 chr1 177680187 177680356 -19515076 - MIR3 SINE MIR -104 172 5 3 1940 204 333 0 0 chr1 177680518 177680590 -19514842 + GA-rich Low_complexity Low_complexity 48 119 0 3 1940 26 74 0 0 chr1 177680619 177680673 -19514759 + AT_rich Low_complexity Low_complexity 1 54 0 3 1940 640 258 8 8 chr1 177681247 177681380 -19514052 + RSINE1 SINE B4 14 146 -19 3 1940 1591 85 9 0 chr1 177681580 177681792 -19513640 + L1_Mus3 LINE L1 6421 6634 -4 3 1940 734 286 155 34 chr1 177681839 177682161 -19513271 - MLT1A LTR MaLR -13 361 1 3 1940 225 291 25 25 chr1 177682890 177682971 -19512461 + RSINE1 SINE B4 78 158 -7 3 1940 525 311 93 32 chr1 177683849 177684279 -19511153 + L1MA6 LINE L1 5697 6151 -149 3 1940 378 0 0 0 chr1 177684410 177684452 -19510980 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1940 288 0 0 0 chr1 177684475 177684507 -19510925 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1940 270 190 291 0 chr1 177684507 177684586 -19510846 + B4A SINE B4 185 286 -6 3 1940 246 32 0 0 chr1 177684597 177684628 -19510804 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1940 1010 290 70 93 chr1 177685217 177685605 -19509827 + MTE2a LTR MaLR 1 379 0 3 1940 709 139 0 51 chr1 177685903 177686139 -19509293 + (CATA)n Simple_repeat Simple_repeat 1 223 0 3 1940 279 0 0 0 chr1 177686337 177686368 -19509064 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1940 3940 93 64 4 chr1 177686403 177686953 -19508479 - Lx3_Mus LINE L1 0 7009 6427 3 1940 1039 320 34 48 chr1 177687162 177687733 -19507699 - Lx9 LINE L1 -160 7484 6847 3 1940 475 301 110 66 chr1 177687754 177687982 -19507450 + B4 SINE B4 55 292 0 3 1940 245 239 28 14 chr1 177687988 177688060 -19507372 + (CATA)n Simple_repeat Simple_repeat 4 76 0 3 1940 3880 17 2 0 chr1 177688196 177688615 -19506817 + L1Md_A LINE L1 6163 6582 0 3 1940 693 303 69 20 chr1 177688778 177689081 -19506351 + Lx9 LINE L1 6570 6887 -757 3 1940 1953 175 37 14 chr1 177689404 177689758 -19505674 - ORR1B2 LTR MaLR 0 367 6 3 1940 9957 85 26 15 chr1 177689857 177691320 -19504112 - L1VL2 LINE L1 -626 2989 1511 3 1940 558 101 0 0 chr1 177691345 177691424 -19504008 - L1VL2 LINE L1 -5828 507 429 3 1940 5352 59 4 24 chr1 177691420 177692174 -19503258 - L1VL2 LINE L1 -2544 1071 333 3 1940 555 300 34 55 chr1 177693643 177693860 -19501572 - L1MA5A LINE L1 -398 5899 5695 3 1940 195 42 0 0 chr1 177695564 177695588 -19499844 + (GGA)n Simple_repeat Simple_repeat 2 25 0 3 1940 279 79 0 0 chr1 177695588 177695626 -19499806 + (ATG)n Simple_repeat Simple_repeat 3 40 0 3 1940 253 356 91 45 chr1 177695641 177695831 -19499601 - MIRb SINE MIR -64 204 4 3 1940 887 137 43 14 chr1 177696204 177696345 -19499087 + B1_Mur4 SINE Alu 5 149 -1 3 1940 327 264 59 0 chr1 177696990 177697089 -19498343 - B1F SINE Alu -7 113 10 3 1940 623 192 0 0 chr1 177697365 177697469 -19497963 - B1_Mus2 SINE Alu -10 137 34 3 1940 23 33 0 0 chr1 177697641 177697671 -19497761 + AT_rich Low_complexity Low_complexity 1 30 0 3 1940 514 240 0 0 chr1 177697693 177697793 -19497639 - RSINE1 SINE B4 -51 114 15 3 1940 396 0 0 0 chr1 177700366 177700410 -19495022 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1940 322 286 0 0 chr1 177700411 177700481 -19494951 - ID4_ SINE ID -13 70 1 3 1940 575 207 99 0 chr1 177701377 177701488 -19493944 - B1_Mur1 SINE Alu -6 143 22 3 1940 290 278 67 0 chr1 177702025 177702115 -19493317 - ORR1D2 LTR MaLR -269 101 6 3 1940 432 0 0 0 chr1 177702568 177702616 -19492816 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1940 480 18 0 0 chr1 177702616 177702672 -19492760 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1940 188 133 0 43 chr1 177702677 177702724 -19492708 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 1940 521 285 77 60 chr1 177702780 177702948 -19492484 - ID_B1 SINE B4 -53 171 1 3 1940 841 250 57 24 chr1 177703797 177704006 -19491426 + ID_B1 SINE B4 2 217 -7 3 1940 486 120 0 0 chr1 177704508 177704583 -19490849 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1940 351 0 0 0 chr1 177704583 177704621 -19490811 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1940 371 233 65 46 chr1 177704971 177705079 -19490353 + B4A SINE B4 183 292 0 3 1940 1260 238 49 43 chr1 177705114 177705439 -19489993 - MTD LTR MaLR -87 332 6 3 1940 1998 285 86 18 chr1 177705909 177706620 -19488812 - Lx8 LINE L1 -4 7469 6711 3 1940 801 31 0 0 chr1 177707228 177707324 -19488108 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 3 1940 1017 62 0 8 chr1 177707324 177707455 -19487977 - B1_Mus1 SINE Alu -2 146 17 3 1940 883 63 0 0 chr1 177707451 177707562 -19487870 - MTB_Mm LTR MaLR -296 111 1 3 1940 204 230 39 29 chr1 177707584 177707635 -19487797 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 3 1940 453 291 156 0 chr1 177707635 177707776 -19487656 - RSINE1 SINE B4 0 165 3 3 1940 204 230 39 29 chr1 177707776 177707827 -19487605 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 3 1940 324 297 29 59 chr1 177708043 177708179 -19487253 - L1MC4a LINE L1 -1938 5944 5813 3 1940 373 280 53 8 chr1 177708198 177708331 -19487101 - L1MB3 LINE L1 -19 6164 6026 3 1940 1559 281 123 32 chr1 177708310 177708487 -19486945 + L1_Mur3 LINE L1 3149 3337 -2543 3 1940 227 29 0 54 chr1 177708487 177708524 -19486908 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1940 1559 281 123 32 chr1 177708524 177709223 -19486209 + L1_Mur3 LINE L1 3338 4105 -1775 3 1940 1538 189 48 7 chr1 177709223 177709532 -19485900 + RLTR30 LTR ERV1 1 322 -57 3 1940 1661 217 155 17 chr1 177709546 177710024 -19485408 + RLTR18 LTR ERVK 24 567 -49 3 1940 363 49 66 0 chr1 177710045 177710106 -19485326 + RLTR30 LTR ERV1 315 379 0 3 1940 2100 153 72 3 chr1 177710400 177710761 -19484671 - ORR1B1 LTR MaLR -8 386 1 3 1940 534 253 178 19 chr1 177710769 177711027 -19484405 + L1M2 LINE L1 4424 4722 -1421 3 1940 207 162 0 0 chr1 177711048 177711085 -19484347 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1940 548 84 12 0 chr1 177711089 177711172 -19484260 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 3 1940 1029 117 0 27 chr1 177711172 177711357 -19484075 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1940 869 298 31 28 chr1 177712280 177712567 -19482865 + B4A SINE B4 1 288 -4 3 1940 606 229 39 77 chr1 177712708 177712725 -19482707 + B4 SINE B4 72 82 -210 3 1940 1114 76 0 0 chr1 177712725 177712869 -19482563 + B1_Mus2 SINE Alu 4 147 0 3 1940 1488 101 133 40 chr1 177712895 177713173 -19482259 + Lx LINE L1 6320 6623 -31 3 1940 1163 81 0 0 chr1 177713173 177713309 -19482123 + B1_Mus1 SINE Alu 1 136 -12 3 1940 191 32 0 61 chr1 177713321 177713354 -19482078 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1940 21 0 0 0 chr1 177713358 177713379 -19482053 + AT_rich Low_complexity Low_complexity 1 21 0 3 1940 190 353 87 19 chr1 177713466 177713570 -19481862 - L2b LINE L2 -20 3355 3245 3 1940 1233 165 29 5 chr1 177713975 177714182 -19481250 + B3 SINE B2 5 216 0 3 1940 821 236 129 16 chr1 177716019 177716213 -19479219 - B3 SINE B2 0 216 1 3 1940 1103 291 10 27 chr1 177717289 177717586 -19477846 + B4 SINE B4 1 292 0 3 1940 1149 234 0 0 chr1 177717754 177717959 -19477473 - B3 SINE B2 -9 207 3 3 1940 4410 127 116 8 chr1 177718363 177719093 -19476339 + RMER17D2 LTR ERVK 1 809 0 3 1940 1246 68 0 0 chr1 177719661 177719809 -19475623 + B1_Mus1 SINE Alu 1 148 0 3 1940 252 0 0 0 chr1 177720879 177720907 -19474525 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 3 1940 716 289 39 22 chr1 177723538 177723768 -19471664 + B4 SINE B4 56 289 -3 3 1940 23 33 0 0 chr1 177723827 177723857 -19471575 + AT_rich Low_complexity Low_complexity 1 30 0 3 1940 559 286 38 0 chr1 177723888 177724021 -19471411 - RSINE1 SINE B4 -12 153 16 3 1940 376 291 118 15 chr1 177724181 177724317 -19471115 + RSINE1 SINE B4 2 151 -14 3 1940 1040 60 68 0 chr1 177725349 177725482 -19469950 + B1_Mus1 SINE Alu 1 142 -6 3 1940 378 238 81 14 chr1 177725669 177725832 -19469600 - L1M3 LINE L1 -2409 3737 3527 3 1940 457 158 0 68 chr1 177725832 177725920 -19469512 - ID_B1 SINE B4 0 224 143 3 1940 198 91 0 0 chr1 177725920 177725953 -19469479 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1940 17003 15 0 0 chr1 177725961 177728601 -19466831 - L1Md_T LINE L1 0 6582 3943 3 1940 3881 20 2 0 chr1 177728601 177729047 -19466385 + L1Md_T LINE L1 3489 3935 -1948 3 1940 748 199 27 0 chr1 177729047 177729193 -19466239 - ID_B1 SINE B4 -68 156 7 3 1940 626 266 64 0 chr1 177730647 177730820 -19464612 + U2 snRNA snRNA 4 187 -1 3 1940 962 227 6 15 chr1 177731307 177731632 -19463800 + GA-rich Low_complexity Low_complexity 1 322 0 3 1940 239 336 16 32 chr1 177731632 177731677 -19463755 + polypurine Low_complexity Low_complexity 2 47 0 3 1940 444 37 0 0 chr1 177731677 177731731 -19463701 + (GGGAA)n Simple_repeat Simple_repeat 1 54 0 3 1940 239 336 16 32 chr1 177731731 177731808 -19463624 + polypurine Low_complexity Low_complexity 48 122 0 3 1940 299 130 0 18 chr1 177732148 177732203 -19463229 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 1940 547 292 31 6 chr1 177732823 177732985 -19462447 - MLT1A0 LTR MaLR 0 365 200 3 1940 595 248 53 0 chr1 177733146 177733279 -19462153 - RSINE1 SINE B4 -11 154 15 3 242 226 243 28 14 chr1 177733582 177733653 -19461779 - ORR1D1 LTR MaLR -302 72 1 3 1941 597 281 52 0 chr1 177733891 177734044 -19461388 + RSINE1 SINE B4 3 163 -2 3 1941 415 261 92 8 chr1 177734247 177734367 -19461065 - MLT1A0 LTR MaLR -227 138 9 3 1941 240 283 0 0 chr1 177735758 177735818 -19459614 + ID4_ SINE ID 2 61 -22 3 1941 371 283 76 0 chr1 177736597 177736689 -19458743 + B3A SINE B2 2 100 -98 4 1941 536 283 63 13 chr1 177737078 177737366 -19458066 - MTEb LTR MaLR 0 379 15 4 1941 198 0 0 0 chr1 177737720 177737742 -19457690 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 1941 474 272 72 14 chr1 177737770 177737908 -19457524 - RSINE1 SINE B4 -17 148 3 4 1941 3621 49 2 5 chr1 177737963 177738412 -19457020 - L1Md_F2 LINE L1 0 6582 6135 4 1941 235 344 62 62 chr1 177739005 177739197 -19456235 - MLT1E2 LTR MaLR -26 601 410 4 1941 246 62 0 0 chr1 177739519 177739551 -19455881 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 4 1941 337 151 138 28 chr1 177739818 177739927 -19455505 + L1M5 LINE L1 5330 5450 -712 4 1941 361 191 59 3 chr1 177740096 177740194 -19455238 + B1_Mur4 SINE Alu 36 141 -9 4 1941 405 0 0 0 chr1 177740194 177740239 -19455193 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1941 779 295 46 5 chr1 177741335 177741550 -19453882 + B4A SINE B4 5 228 -64 4 1941 503 313 50 41 chr1 177741550 177741785 -19453647 + B4 SINE B4 1 246 -46 4 1941 849 229 6 12 chr1 177741832 177742004 -19453428 + B3 SINE B2 1 171 -45 4 1941 408 40 0 0 chr1 177742282 177742332 -19453100 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1941 225 0 0 0 chr1 177742332 177742356 -19453076 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1941 258 127 51 0 chr1 177742359 177742438 -19452994 + (CAGA)n Simple_repeat Simple_repeat 4 86 0 4 1941 249 230 90 51 chr1 177743537 177743615 -19451817 + ID4_ SINE ID 1 81 -2 4 1941 878 141 21 21 chr1 177743626 177743771 -19451661 + B1_Mus2 SINE Alu 2 146 -1 4 1941 785 274 11 0 chr1 177743910 177744096 -19451336 + B4A SINE B4 5 192 -100 4 1941 360 0 0 0 chr1 177744892 177744932 -19450500 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1941 332 309 31 31 chr1 177744939 177745069 -19450363 - RSINE1 SINE B4 -33 132 3 4 1941 306 300 22 11 chr1 177745078 177745169 -19450263 - B1F2 SINE Alu -8 141 50 4 1941 619 170 11 11 chr1 177746087 177746355 -19449077 + GA-rich Low_complexity Low_complexity 1 268 0 4 1941 1159 243 42 16 chr1 177746448 177746754 -19448678 + RMER5 LTR ERV1 15 328 -206 4 1941 1150 187 55 13 chr1 177746754 177746992 -19448440 - ORR1C2 LTR MaLR -2 382 135 4 1941 36334 43 2 3 chr1 177746993 177752210 -19443222 + L1Md_T LINE L1 281 5588 -298 4 1941 8700 29 0 0 chr1 177752211 177753207 -19442225 + L1Md_T LINE L1 5590 6585 0 4 1941 443 250 11 173 chr1 177753209 177753388 -19442044 - ORR1C2 LTR MaLR -206 153 1 4 1941 679 215 60 5 chr1 177753388 177753588 -19441844 + RMER5 LTR ERV1 324 534 0 4 1941 269 264 87 57 chr1 177754973 177755202 -19440230 + L1MEg LINE L1 1272 1507 -4577 4 1941 929 73 36 7 chr1 177755319 177755457 -19439975 + B2_Mm2 SINE B2 5 146 -49 4 1941 310 211 221 35 chr1 177755456 177755569 -19439863 + B3A SINE B2 15 148 -50 4 1941 236 100 0 24 chr1 177755572 177755613 -19439819 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1941 1087 233 52 63 chr1 177756513 177756880 -19438552 + ORR1E LTR MaLR 5 367 -3 4 1941 1250 271 33 9 chr1 177756883 177757215 -19438217 + ORR1E-int LTR MaLR 1 340 -1030 4 1941 379 286 170 63 chr1 177757752 177758258 -19437174 + RMER4B LTR ERVK 17 576 -9 4 1941 575 183 26 9 chr1 177758265 177758381 -19437051 + B1_Mur4 SINE Alu 32 149 -1 4 1941 1344 243 34 26 chr1 177758540 177758890 -19436542 + ORR1E LTR MaLR 5 357 -2 4 1941 237 65 0 0 chr1 177759088 177759119 -19436313 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 4 1941 490 245 68 20 chr1 177759498 177759691 -19435741 - L1MB5 LINE L1 -152 6022 5823 4 1941 281 26 26 0 chr1 177759691 177759729 -19435703 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1941 911 320 48 7 chr1 177759733 177760004 -19435428 - B4 SINE B4 -4 288 7 4 1941 745 214 28 0 chr1 177760160 177760305 -19435127 + B1_Mur1 SINE Alu 1 149 0 4 1941 446 334 50 68 chr1 177760326 177760573 -19434859 + L1M5 LINE L1 4742 4991 -1155 4 1941 515 271 65 16 chr1 177760573 177760757 -19434675 + B3A SINE B2 1 193 -5 4 1941 446 334 50 68 chr1 177760757 177760809 -19434623 + L1M5 LINE L1 4992 5037 -1109 4 1941 1330 87 5 16 chr1 177760809 177760997 -19434435 - B2_Mm2 SINE B2 -9 186 1 4 1941 446 334 50 68 chr1 177760997 177761057 -19434375 + L1M5 LINE L1 5038 5095 -1051 4 1941 423 0 0 0 chr1 177761057 177761104 -19434328 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1941 318 262 0 0 chr1 177761104 177761184 -19434248 + ID4_ SINE ID 3 82 -1 4 1941 446 329 43 35 chr1 177761184 177761524 -19433908 + L1M5 LINE L1 5096 5435 -738 4 1941 1393 274 88 6 chr1 177761558 177762068 -19433364 + L1MC LINE L1 4285 4836 -1310 4 1941 604 319 54 21 chr1 177762604 177762940 -19432492 - Charlie21a DNA MER1_type -391 822 476 4 1941 842 250 24 19 chr1 177763585 177763797 -19431635 + B3 SINE B2 1 213 -3 4 1941 1159 61 7 7 chr1 177764182 177764330 -19431102 + B1_Mus1 SINE Alu 1 148 0 4 1941 184 30 0 57 chr1 177764333 177764368 -19431064 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1941 447 92 0 0 chr1 177764368 177764433 -19430999 + B3 SINE B2 27 91 -125 4 1941 450 53 0 0 chr1 177764464 177764521 -19430911 + (TCC)n Simple_repeat Simple_repeat 2 58 0 4 1941 822 147 0 0 chr1 177765170 177765313 -19430119 + (TCC)n Simple_repeat Simple_repeat 1 143 0 4 1941 411 21 0 0 chr1 177765331 177765379 -19430053 + (CATA)n Simple_repeat Simple_repeat 1 48 0 4 1941 30 45 0 0 chr1 177765584 177765628 -19429804 + AT_rich Low_complexity Low_complexity 1 44 0 4 1941 214 174 43 21 chr1 177765715 177765762 -19429670 - MIRc SINE MIR -108 160 113 4 1941 2427 119 17 14 chr1 177765771 177766188 -19429244 - RMER6A LTR ERVK 0 756 339 4 1941 259 187 42 106 chr1 177766166 177766279 -19429153 - PB1D9 SINE Alu -40 107 9 4 1941 448 162 16 132 chr1 177766257 177766378 -19429054 - MT2B LTR ERVL -314 287 181 4 1941 240 135 0 0 chr1 177766390 177766427 -19429005 - RMER6A LTR ERVK -683 37 1 4 1941 1181 58 0 0 chr1 177766428 177766583 -19428849 + B2_Mm1t SINE B2 2 156 -37 4 1941 234 0 0 0 chr1 177766583 177766609 -19428823 + (TATAA)n Simple_repeat Simple_repeat 5 30 0 4 1941 189 0 0 0 chr1 177766610 177766631 -19428801 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4 1941 1260 71 0 0 chr1 177767273 177767441 -19427991 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 4 1941 344 138 15 0 chr1 177767444 177767509 -19427923 + GA-rich Low_complexity Low_complexity 1 66 0 4 1941 304 256 151 0 chr1 177767531 177767617 -19427815 + PB1D10 SINE Alu 18 116 -1 4 1941 2184 106 21 59 chr1 177768025 177768365 -19427067 + ORR1A2 LTR MaLR 1 327 0 4 1941 368 313 30 8 chr1 177769625 177769757 -19425675 + MLT1D LTR MaLR 303 437 -68 4 1941 1355 98 11 0 chr1 177769782 177769965 -19425467 - B2_Mm1t SINE B2 -7 186 2 4 1941 1073 78 35 0 chr1 177769990 177770131 -19425301 + B1_Mus2 SINE Alu 1 146 -1 4 1941 1250 68 28 33 chr1 177770146 177770328 -19425104 - B2_Mm2 SINE B2 -14 181 1 4 1941 315 266 25 0 chr1 177770673 177770752 -19424680 + MT2A LTR ERVL 344 424 -109 4 1941 338 156 0 181 chr1 177770750 177770844 -19424588 - ORR1B1 LTR MaLR -317 77 1 4 1941 647 209 0 7 chr1 177770845 177770980 -19424452 + B4A SINE B4 159 292 0 4 1941 203 200 0 24 chr1 177771000 177771041 -19424391 + (CATA)n Simple_repeat Simple_repeat 3 42 0 4 1941 241 68 45 0 chr1 177771052 177771096 -19424336 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 4 1941 344 255 9 52 chr1 177771893 177772036 -19423396 + L1_Rod LINE L1 5508 5656 -635 4 1941 680 139 92 22 chr1 177772262 177772439 -19422993 - B3 SINE B2 -14 181 4 4 1941 4432 14 2 12 chr1 177772678 177773176 -19422256 + MT2_Mm LTR ERVL 1 493 0 4 1941 41467 15 14 0 chr1 177773176 177778463 -19416969 + MERVL-int LTR ERVL 1 5360 -125 4 1941 343 167 46 35 chr1 177778463 177778550 -19416882 + ORR1A3-int LTR MaLR 553 640 -1323 4 1941 321 0 0 0 chr1 177778550 177778588 -19416844 + MERVL-int LTR ERVL 5448 5485 0 4 1941 4432 14 2 12 chr1 177778588 177779086 -19416346 + MT2_Mm LTR ERVL 1 493 0 4 1941 497 209 9 9 chr1 177779928 177780034 -19415398 - PB1D10 SINE Alu -1 116 11 4 1941 308 233 8 0 chr1 177780186 177780306 -19415126 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 1941 308 259 126 46 chr1 177780306 177780480 -19414952 - L1MC1 LINE L1 -16 6317 6130 4 1941 1418 253 17 0 chr1 177780483 177780839 -19414593 - MTEb LTR MaLR -8 371 10 4 1941 263 276 0 0 chr1 177780888 177780946 -19414486 - L1MC1 LINE L1 -260 6073 6016 4 1941 374 290 50 94 chr1 177781950 177782037 -19413395 + RSINE1 SINE B4 10 96 -69 4 1941 2300 79 30 60 chr1 177782037 177782373 -19413059 - ORR1A2 LTR MaLR -1 326 1 4 1941 374 290 50 94 chr1 177782373 177782445 -19412987 + RSINE1 SINE B4 97 162 -3 4 1941 335 252 86 19 chr1 177783090 177783195 -19412237 - PB1D10 SINE Alu -1 116 5 4 1941 203 253 11 0 chr1 177783503 177783598 -19411834 + GA-rich Low_complexity Low_complexity 1 96 0 4 1941 484 212 8 66 chr1 177783750 177783871 -19411561 - B3A SINE B2 -82 116 3 4 1941 914 78 0 23 chr1 177784132 177784263 -19411169 - L1_Mur2 LINE L1 -1301 4576 4449 4 1941 989 60 8 0 chr1 177784947 177785080 -19410352 + (GA)n Simple_repeat Simple_repeat 2 135 0 4 1941 333 242 0 71 chr1 177785093 177785191 -19410241 + PB1D10 SINE Alu 27 117 0 4 1941 790 245 9 78 chr1 177785197 177785414 -19410018 + B3 SINE B2 1 202 -14 4 1941 331 294 61 52 chr1 177785435 177785550 -19409882 + B4A SINE B4 3 118 -174 4 1941 257 300 11 22 chr1 177785813 177785905 -19409527 + RSINE1 SINE B4 75 165 0 4 1941 327 164 0 0 chr1 177786487 177786548 -19408884 + GA-rich Low_complexity Low_complexity 3 63 0 4 1941 266 371 77 5 chr1 177788034 177788229 -19407203 + MIR SINE MIR 14 222 -40 4 1941 330 285 60 23 chr1 177788897 177789030 -19406402 + B1F SINE Alu 1 138 -11 4 1941 1843 131 94 0 chr1 177789030 177789359 -19406073 - ORR1B2 LTR MaLR -7 360 1 4 1941 1826 244 49 45 chr1 177790784 177790869 -19404563 + Lx6 LINE L1 6965 7037 -423 4 1941 1350 91 0 6 chr1 177790869 177791045 -19404387 + B2_Mm2 SINE B2 2 176 -19 4 1941 1826 244 49 45 chr1 177791045 177791453 -19403979 + Lx6 LINE L1 7038 7459 -1 4 1941 873 227 54 29 chr1 177792168 177792372 -19403060 + B3 SINE B2 2 210 -6 4 1941 650 254 35 20 chr1 177792521 177792722 -19402710 + Lx6 LINE L1 7257 7460 0 4 1941 230 231 0 19 chr1 177794232 177794285 -19401147 + CT-rich Low_complexity Low_complexity 3 54 0 5 1941 1131 69 14 0 chr1 177794895 177795039 -19400393 + B1_Mm SINE Alu 1 146 -1 5 1941 2225 181 5 17 chr1 177795052 177795474 -19399958 + MTC LTR MaLR 1 417 -4 5 1941 525 60 0 57 chr1 177795477 177795565 -19399867 + L1Md_F2 LINE L1 6500 6582 0 5 1941 235 312 11 0 chr1 177795708 177795801 -19399631 + L1M5 LINE L1 5713 5806 -367 5 1941 380 20 20 0 chr1 177795805 177795854 -19399578 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1941 231 218 0 113 chr1 177795861 177795923 -19399509 - B1F SINE Alu -17 132 78 5 1941 874 131 256 0 chr1 177796072 177796240 -19399192 + B3 SINE B2 5 215 -1 5 1941 732 239 46 18 chr1 177796623 177796840 -19398592 - ID_B1 SINE B4 0 224 2 5 1941 211 224 0 0 chr1 177797604 177797653 -19397779 + T-rich Low_complexity Low_complexity 1 49 0 5 1941 1044 71 0 79 chr1 177798368 177798520 -19396912 - B1_Mus2 SINE Alu -7 140 1 5 1941 505 261 9 0 chr1 177798757 177798872 -19396560 + RSINE1 SINE B4 3 118 -47 5 1941 22 0 0 0 chr1 177798963 177798985 -19396447 + AT_rich Low_complexity Low_complexity 1 22 0 5 1941 284 372 32 45 chr1 177799350 177799662 -19395770 + L2a LINE L2 2976 3283 -143 5 1941 448 175 0 24 chr1 177799733 177799815 -19395617 + ID4 SINE ID 2 81 -2 5 1941 685 303 59 0 chr1 177799828 177800049 -19395383 - MTE2b LTR MaLR -145 234 1 5 1941 423 0 0 0 chr1 177800058 177800105 -19395327 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 1941 231 36 0 0 chr1 177800755 177800783 -19394649 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1941 312 288 68 34 chr1 177801172 177801348 -19394084 - L1ME3A LINE L1 -292 5881 5700 5 1941 266 285 88 44 chr1 177801431 177801567 -19393865 - MLT1A1 LTR MaLR 0 408 267 5 1941 785 238 35 53 chr1 177802607 177802833 -19392599 - ID_B1 SINE B4 -2 222 1 5 1941 331 321 9 0 chr1 177802861 177802973 -19392459 + MLT1C LTR MaLR 313 425 -42 5 1941 197 149 0 41 chr1 177803428 177803477 -19391955 + GA-rich Low_complexity Low_complexity 2 48 0 5 1941 565 259 67 0 chr1 177803484 177803619 -19391813 - RSINE1 SINE B4 -20 145 2 5 1941 209 325 78 0 chr1 177803927 177804004 -19391428 - MIRc SINE MIR -71 197 115 5 1941 2990 99 111 41 chr1 177804006 177804491 -19390941 + MURVY-LTR LTR ERV1 1 519 0 5 1941 786 154 26 13 chr1 177805085 177805236 -19390196 + RLTR9B LTR ERVK 285 437 0 5 1941 261 0 0 0 chr1 177805427 177805456 -19389976 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1941 21 0 0 0 chr1 177806754 177806775 -19388657 + AT_rich Low_complexity Low_complexity 1 21 0 5 1941 525 308 12 19 chr1 177806990 177807110 -19388322 + RSINE1 SINE B4 3 123 -42 5 1941 387 0 0 0 chr1 177807110 177807153 -19388279 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1941 243 0 0 0 chr1 177807153 177807179 -19388253 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1941 525 308 12 19 chr1 177807179 177807219 -19388213 + RSINE1 SINE B4 124 162 -3 5 1941 1377 95 21 5 chr1 177807338 177807529 -19387903 - B2_Mm2 SINE B2 0 195 2 5 1941 293 248 82 68 chr1 177807782 177807929 -19387503 - L1M5 LINE L1 -461 5663 5515 5 1941 604 208 161 35 chr1 177808295 177808469 -19386963 - B3A SINE B2 -2 196 1 5 1941 799 224 28 11 chr1 177808482 177808658 -19386774 - B3 SINE B2 -36 180 2 5 1941 1086 95 0 13 chr1 177808731 177808880 -19386552 - B1_Mus1 SINE Alu 0 148 2 5 1941 21 36 0 0 chr1 177808943 177808971 -19386461 + AT_rich Low_complexity Low_complexity 1 28 0 5 1941 4816 47 10 2 chr1 177809530 177810112 -19385320 + LTRIS_Mus LTR ERV1 1 587 0 5 1941 365 315 108 40 chr1 177811990 177812241 -19383191 + B4A SINE B4 24 291 -1 5 1941 406 251 212 32 chr1 177813247 177813436 -19381996 - ID_B1 SINE B4 -1 223 1 5 1941 748 240 53 19 chr1 177813629 177813892 -19381540 - RLTR15 LTR ERVK -16 343 72 5 1941 3150 171 76 39 chr1 177813958 177814652 -19380780 - MYSERV6-int LTR ERVK -2 8957 8238 5 1941 237 217 145 0 chr1 177815236 177815317 -19380115 - ID_B1 SINE B4 -7 217 125 5 1941 1212 152 307 33 chr1 177815317 177815608 -19379824 - ORR1D1 LTR MaLR -2 372 2 5 1941 1222 62 0 0 chr1 177816200 177816360 -19379072 + B2_Mm1t SINE B2 1 160 -33 5 1941 275 0 0 28 chr1 177816360 177816396 -19379036 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1941 252 89 0 0 chr1 177816454 177816499 -19378933 + B2_Mm1t SINE B2 135 179 -14 5 1941 294 179 0 0 chr1 177816706 177816762 -19378670 + (TAA)n Simple_repeat Simple_repeat 2 57 0 5 1941 232 35 0 134 chr1 177817017 177817084 -19378348 - B2_Mm2 SINE B2 -1 194 137 5 1941 1241 119 11 0 chr1 177817113 177817289 -19378143 - B2_Mm1t SINE B2 -14 179 2 5 1941 243 0 0 0 chr1 177817491 177817518 -19377914 + (ATG)n Simple_repeat Simple_repeat 2 28 0 5 1941 474 127 25 25 chr1 177819191 177819272 -19376160 - ID4 SINE ID 0 83 3 5 1941 1371 90 37 16 chr1 177819501 177819692 -19375740 - B2_Mm2 SINE B2 0 195 1 5 1941 3370 16 37 0 chr1 177819843 177820225 -19375207 + MTA_Mm LTR MaLR 1 396 0 5 1941 9593 18 2 5 chr1 177820225 177821326 -19374106 + MTA_Mm-int LTR MaLR 1 1098 0 5 1941 3272 16 50 0 chr1 177821326 177821703 -19373729 + MTA_Mm LTR MaLR 1 396 0 5 1941 388 215 25 25 chr1 177822654 177822735 -19372697 - ID_B1 SINE B4 -8 216 136 5 1941 498 226 29 0 chr1 177824100 177824202 -19371230 + PB1D7 SINE Alu 3 107 -13 5 1941 626 241 80 0 chr1 177824208 177824345 -19371087 - B1_Mur2 SINE Alu 0 149 2 5 1941 213 280 0 0 chr1 177825030 177825105 -19370327 + T-rich Low_complexity Low_complexity 1 75 0 5 1941 504 170 17 67 chr1 177825333 177825453 -19369979 - PB1D9 SINE Alu 0 120 7 5 1941 380 220 176 30 chr1 177825338 177825469 -19369963 - ID_B1 SINE B4 0 224 75 5 1941 425 238 105 0 chr1 177825744 177825849 -19369583 + PB1D7 SINE Alu 3 118 -2 5 1941 384 60 0 0 chr1 177825869 177825919 -19369513 + B2_Mm2 SINE B2 3 52 -143 5 1941 315 331 64 32 chr1 177826802 177826958 -19368474 - L1M4 LINE L1 -1374 4772 4612 5 1941 617 188 32 83 chr1 177826963 177827120 -19368312 + B1_Mur3 SINE Alu 1 149 0 5 1941 1785 166 334 9 chr1 177827121 177827586 -19367846 - RMER20B LTR ERVK -2 625 10 5 1941 1199 34 0 39 chr1 177827829 177827982 -19367450 - B1_Mus2 SINE Alu 0 147 1 5 1941 331 224 123 71 chr1 177828049 177828203 -19367229 - RSINE1 SINE B4 -1 164 3 5 1941 1195 55 7 0 chr1 177828560 177828705 -19366727 + B1_Mus2 SINE Alu 2 147 0 5 1941 539 302 144 4 chr1 177829862 177830098 -19365334 - MTE2b LTR MaLR 0 379 111 5 1941 220 310 0 78 chr1 177830524 177830601 -19364831 - B1_Mus1 SINE Alu -54 94 24 5 1941 532 186 90 69 chr1 177830698 177830842 -19364590 + B1_Mur2 SINE Alu 3 149 0 5 1941 243 0 0 0 chr1 177830855 177830882 -19364550 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1941 1139 36 15 0 chr1 177831687 177831824 -19363608 + B1_Mus1 SINE Alu 2 140 -8 5 1941 630 0 0 0 chr1 177831832 177831902 -19363530 + (GGAAA)n Simple_repeat Simple_repeat 4 73 0 5 1941 708 139 0 0 chr1 177831944 177832052 -19363380 + B3 SINE B2 2 109 -107 5 1941 449 185 10 42 chr1 177832220 177832316 -19363116 + B1_Mus1 SINE Alu 1 93 -55 5 1941 567 256 0 0 chr1 177832368 177832485 -19362947 + PB1D10 SINE Alu 1 117 0 5 1941 221 266 167 21 chr1 177832895 177832991 -19362441 + PB1D10 SINE Alu 1 110 -7 5 1941 318 377 13 33 chr1 177833002 177833153 -19362279 + B1F1 SINE Alu 1 148 -1 5 1941 891 266 116 77 chr1 177833602 177834028 -19361404 - Lx8 LINE L1 -1 7472 7024 5 1941 513 0 0 0 chr1 177834028 177834085 -19361347 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1941 891 266 116 77 chr1 177834085 177834192 -19361240 - Lx8 LINE L1 -450 7023 6918 5 1941 218 254 0 0 chr1 177834634 177834675 -19360757 + A-rich Low_complexity Low_complexity 1 41 0 5 1941 942 19 0 0 chr1 177834675 177834779 -19360653 + U6 snRNA snRNA 1 104 -3 5 1941 218 254 0 0 chr1 177834779 177834804 -19360628 + A-rich Low_complexity Low_complexity 42 66 0 5 1941 1041 71 50 0 chr1 177834873 177835014 -19360418 - B1_Mus1 SINE Alu 0 148 1 5 1941 463 228 26 0 chr1 177835438 177835552 -19359880 + PB1D9 SINE Alu 3 119 -1 5 1941 2109 130 35 0 chr1 177836390 177836706 -19358726 - ORR1A2 LTR MaLR 0 327 1 5 1941 253 256 103 93 chr1 177836772 177836966 -19358466 + B3A SINE B2 3 198 0 5 1941 268 206 0 8 chr1 177837024 177837085 -19358347 + PB1D9 SINE Alu 9 66 -83 5 1941 297 75 0 0 chr1 177837096 177837136 -19358296 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 5 1941 195 114 0 0 chr1 177837160 177837195 -19358237 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 5 1941 518 312 36 0 chr1 177837200 177837338 -19358094 + RSINE1 SINE B4 2 144 -21 5 1941 284 328 23 15 chr1 177837400 177837530 -19357902 + ID_B1 SINE B4 6 136 -88 5 1941 263 274 0 0 chr1 177837549 177837611 -19357821 + MurSatRep1 Unknown Unknown 223 284 -1853 5 1941 513 177 51 42 chr1 177837631 177837749 -19357683 - B1F2 SINE Alu 0 149 31 5 1941 283 312 93 14 chr1 177837721 177837861 -19357571 - Charlie1a DNA MER1_type -1257 198 48 5 1941 522 0 0 0 chr1 177838000 177838058 -19357374 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1941 390 186 101 12 chr1 177838171 177838272 -19357160 + B1_Mur1 SINE Alu 17 124 -3 5 1941 195 69 0 0 chr1 177838329 177838358 -19357074 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1941 198 0 0 0 chr1 177839478 177839500 -19355932 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 5 1941 731 159 38 0 chr1 177840584 177840716 -19354716 + B1_Mus2 SINE Alu 3 139 -8 6 1941 337 243 180 0 chr1 177840755 177840866 -19354566 + ID_B1 SINE B4 81 211 -13 6 1941 1640 159 82 3 chr1 177841140 177841480 -19353952 - RLTR14 LTR ERV1 -5 377 11 6 1941 295 295 80 0 chr1 177841555 177841667 -19353765 + Charlie12 DNA MER1_type 9 129 -2744 6 1941 1233 41 0 0 chr1 177841667 177841812 -19353620 - B1_Mm SINE Alu 0 147 3 6 1941 1426 65 38 0 chr1 177841812 177841997 -19353435 - B2_Mm2 SINE B2 -2 193 2 6 1941 324 298 154 14 chr1 177842088 177842231 -19353201 + RSINE1 SINE B4 3 165 0 6 1941 1465 158 111 26 chr1 177842576 177842882 -19352550 - MTC LTR MaLR -89 332 1 6 1941 615 133 347 11 chr1 177842882 177843072 -19352360 - MTC-int LTR MaLR 0 1258 1005 6 1941 912 146 21 0 chr1 177843325 177843469 -19351963 + B1_Mur2 SINE Alu 3 149 0 6 1941 252 267 69 0 chr1 177843582 177843698 -19351734 + MER33 DNA MER1_type 190 313 -11 6 1941 2015 166 28 3 chr1 177844498 177844861 -19350571 - RLTR14 LTR ERV1 0 382 11 6 1941 782 173 0 61 chr1 177844885 177845033 -19350399 + B1_Mur4 SINE Alu 3 141 -9 6 1941 189 0 0 0 chr1 177845046 177845067 -19350365 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1941 628 269 49 11 chr1 177845244 177845428 -19350004 - B3A SINE B2 0 198 8 6 1941 455 301 54 20 chr1 177846209 177846412 -19349020 - ID_B1 SINE B4 -1 223 14 6 1941 866 129 233 6 chr1 177847343 177847515 -19347917 - B3 SINE B2 -5 211 1 6 1941 525 55 0 0 chr1 177848005 177848078 -19347354 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 6 1941 375 233 12 0 chr1 177848778 177848864 -19346568 - PB1D10 SINE Alu -8 109 23 6 1941 285 247 82 0 chr1 177849047 177849120 -19346312 + RSINE1 SINE B4 11 89 -76 6 1941 1412 76 43 0 chr1 177849205 177849389 -19346043 + B2_Mm2 SINE B2 2 193 -2 6 1941 375 241 36 42 chr1 177849543 177849638 -19345794 - PB1D10 SINE Alu -8 109 14 6 1941 329 257 35 44 chr1 177849844 177849958 -19345474 + PB1D9 SINE Alu 5 117 -3 6 1941 498 108 0 0 chr1 177850025 177850099 -19345333 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 6 1941 1100 36 72 0 chr1 177850100 177850238 -19345194 - B1_Mus1 SINE Alu 0 148 1 6 1941 512 30 15 0 chr1 177852392 177852458 -19342974 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1941 716 204 7 40 chr1 177852853 177853001 -19342431 - B1_Mur2 SINE Alu -6 143 1 6 1941 511 236 78 47 chr1 177853040 177853169 -19342263 + B1_Mur1 SINE Alu 2 134 -15 6 1941 374 258 87 48 chr1 177853238 177853364 -19342068 - B1F1 SINE Alu -5 144 14 6 1941 1736 171 135 21 chr1 177853646 177854023 -19341409 - MTC LTR MaLR 0 421 2 6 1941 1244 27 7 0 chr1 177854362 177854508 -19340924 + B1_Mus1 SINE Alu 1 147 -1 6 1941 236 360 21 21 chr1 177854772 177854914 -19340518 - MER5A1 DNA MER1_type -12 154 13 6 1941 235 204 84 77 chr1 177855254 177855397 -19340035 + Lx5 LINE L1 6906 7049 -1 6 1941 1222 41 7 0 chr1 177855568 177855714 -19339718 - B1_Mus1 SINE Alu 0 148 2 6 1941 1282 97 11 0 chr1 177855980 177856155 -19339277 + B2_Mm1t SINE B2 3 179 -14 6 1941 371 101 0 5 chr1 177856183 177856248 -19339184 + B2_Mm2 SINE B2 47 109 -107 6 1941 789 129 71 7 chr1 177856670 177856810 -19338622 + B2_Mm2 SINE B2 2 150 -45 6 1941 597 249 35 55 chr1 177857383 177857583 -19337849 - ORR1E LTR MaLR -70 289 94 6 1941 936 117 18 24 chr1 177857608 177857775 -19337657 + URR1A DNA MER1_type 61 226 0 6 1941 236 246 105 0 chr1 177857795 177857852 -19337580 - ORR1E LTR MaLR -307 63 1 6 1941 1895 173 65 6 chr1 177858139 177858494 -19336938 + MTC LTR MaLR 1 376 -45 6 1941 246 95 0 0 chr1 177858494 177858536 -19336896 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 6 1941 296 51 0 0 chr1 177858567 177858606 -19336826 - B1_Mur4 SINE Alu -111 39 1 6 1941 990 150 6 0 chr1 177858701 177858868 -19336564 - URR1A DNA MER1_type 0 226 59 6 1941 1544 186 48 27 chr1 177859165 177859496 -19335936 - Lx7 LINE L1 -1294 6402 6065 6 1941 1366 176 110 7 chr1 177859697 177859988 -19335444 - ORR1A4 LTR MaLR -8 321 1 6 1941 390 346 50 43 chr1 177860468 177860746 -19334686 - HERV16-int LTR ERVL -4372 624 345 6 1941 1176 75 0 0 chr1 177860940 177861086 -19334346 + B1_Mm SINE Alu 1 146 -1 6 1941 414 0 0 0 chr1 177861859 177861905 -19333527 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1941 414 0 0 0 chr1 177861905 177861950 -19333482 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1941 267 329 41 7 chr1 177863310 177863457 -19331975 + YREP_Mm Unknown Unknown 156 307 -1505 6 1941 612 262 38 0 chr1 177863341 177863501 -19331931 - ID_B1 SINE B4 -14 210 45 6 1941 576 252 14 7 chr1 177863806 177863946 -19331486 + RSINE1 SINE B4 3 143 -22 6 1942 907 230 14 9 chr1 177864738 177864953 -19330479 - B3 SINE B2 0 216 1 6 1942 236 114 44 22 chr1 177865025 177865070 -19330362 + B4A SINE B4 186 231 -61 6 1942 507 208 344 6 chr1 177865071 177865231 -19330201 + B3 SINE B2 3 216 0 6 1942 572 116 195 9 chr1 177865243 177865356 -19330076 + B1_Mus2 SINE Alu 11 144 -3 6 1942 519 252 63 0 chr1 177865362 177865489 -19329943 + B1_Mur1 SINE Alu 1 135 -14 6 1942 315 0 0 0 chr1 177865559 177865594 -19329838 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1942 1050 127 0 13 chr1 177866016 177866168 -19329264 - B1_Mur4 SINE Alu 0 150 1 6 1942 694 210 5 5 chr1 177866964 177867179 -19328253 + CT-rich Low_complexity Low_complexity 1 215 0 6 1942 321 197 0 14 chr1 177867201 177867273 -19328159 - ID_B1 SINE B4 -78 146 76 6 1942 690 133 0 0 chr1 177867389 177867502 -19327930 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1942 372 43 0 0 chr1 177867573 177867619 -19327813 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1942 1900 172 45 11 chr1 177867634 177867992 -19327440 - ORR1D1 LTR MaLR -4 370 1 6 1942 283 251 16 2 chr1 177868015 177868092 -19327340 - B3A SINE B2 -114 81 5 6 1942 264 287 61 50 chr1 177868147 177868246 -19327186 - PB1 SINE Alu -3 124 25 6 1942 781 243 202 40 chr1 177869239 177869565 -19325867 - MTE2b LTR MaLR 0 379 1 6 1942 397 194 204 0 chr1 177869831 177869924 -19325508 - B1_Mur4 SINE Alu -38 112 1 6 1942 218 278 116 53 chr1 177869931 177870026 -19325406 - PB1D10 SINE Alu -15 102 2 6 1942 468 308 69 0 chr1 177870055 177870185 -19325247 + RSINE1 SINE B4 3 141 -24 6 1942 432 0 0 0 chr1 177870227 177870275 -19325157 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1942 718 78 17 0 chr1 177870452 177870567 -19324865 + (GA)n Simple_repeat Simple_repeat 1 117 0 6 1942 251 306 92 5 chr1 177870938 177871155 -19324277 + L1M5 LINE L1 5255 5490 -634 6 1942 1130 48 0 7 chr1 177871226 177871372 -19324060 + L1Md_F3 LINE L1 6425 6569 -15 6 1942 257 231 15 0 chr1 177871383 177871448 -19323984 - MTEa LTR MaLR -42 337 272 6 1942 328 201 40 0 chr1 177871534 177871683 -19323749 + (TAGA)n Simple_repeat Simple_repeat 3 157 0 6 1942 237 300 11 11 chr1 177871836 177871927 -19323505 - MLT1B LTR MaLR 0 408 318 6 1942 279 218 97 65 chr1 177872200 177872293 -19323139 - MLT1B LTR MaLR -33 357 262 6 1942 248 338 0 0 chr1 177872640 177872717 -19322715 - LTR85a LTR Gypsy? -102 600 524 6 1942 3286 133 79 150 chr1 177873084 177873261 -19322171 - RMER6A LTR ERVK -1 755 604 6 1942 1138 68 0 20 chr1 177873261 177873410 -19322022 - B1_Mus2 SINE Alu 0 147 2 6 1942 3286 133 79 150 chr1 177873410 177874045 -19321387 - RMER6A LTR ERVK -153 603 1 6 1942 325 196 0 0 chr1 177874529 177874585 -19320847 - B2_Mm2 SINE B2 -139 56 1 6 1942 2465 191 20 6 chr1 177874710 177875209 -19320223 + RMER20A LTR ERVK 11 516 0 6 1942 271 209 21 62 chr1 177876098 177876195 -19319237 + MLT1A1 LTR MaLR 316 408 0 6 1942 802 226 15 45 chr1 177876497 177876694 -19318738 - B3A SINE B2 -7 188 14 6 1942 189 305 17 0 chr1 177876774 177876833 -19318599 + MIRc SINE MIR 180 239 -29 6 1942 263 283 114 30 chr1 177877440 177877571 -19317861 + MER77 LTR ERVL 460 601 -6 6 1942 791 251 11 0 chr1 177878228 177878407 -19317025 + MTE2a LTR MaLR 195 375 -4 6 1942 353 276 0 9 chr1 177878483 177878589 -19316843 + MLT1A1 LTR MaLR 261 365 -43 6 1942 379 288 121 128 chr1 177879005 177879459 -19315973 - RLTR12B LTR ERVK -31 497 47 6 1942 692 180 49 28 chr1 177879538 177879669 -19315763 + B1_Mm SINE Alu 2 138 -9 6 1942 345 47 0 0 chr1 177879669 177879712 -19315720 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1942 692 180 49 28 chr1 177879712 177879723 -19315709 + B1_Mm SINE Alu 139 147 0 6 1942 28 48 0 0 chr1 177880208 177880250 -19315182 + AT_rich Low_complexity Low_complexity 1 42 0 6 1942 846 201 111 25 chr1 177880330 177880529 -19314903 - B3 SINE B2 0 216 1 6 1942 282 294 0 0 chr1 177880530 177880615 -19314817 - L1MA4A LINE L1 -388 5915 5831 6 1942 357 204 5 15 chr1 177882122 177882198 -19313234 + B1_Mur3 SINE Alu 36 114 -35 6 1942 438 307 116 71 chr1 177882272 177882439 -19312993 - L1MEg LINE L1 -4053 2031 1867 6 1942 422 260 93 84 chr1 177882439 177882653 -19312779 - B3 SINE B2 0 216 1 6 1942 438 307 116 71 chr1 177882653 177882759 -19312673 - L1MEg LINE L1 -4218 1866 1770 6 1942 546 57 0 0 chr1 177882759 177882829 -19312603 + (TATG)n Simple_repeat Simple_repeat 4 73 0 6 1942 420 322 62 7 chr1 177882829 177882973 -19312459 - RSINE1 SINE B4 -11 154 3 6 1942 438 307 116 71 chr1 177882973 177883206 -19312226 - L1MEg LINE L1 -4315 1769 1501 6 1942 601 172 106 8 chr1 177883297 177883420 -19312012 - B1F2 SINE Alu -10 139 5 6 1942 183 96 58 0 chr1 177883482 177883534 -19311898 + T-rich Low_complexity Low_complexity 2 56 0 6 1942 245 167 48 19 chr1 177884100 177884204 -19311228 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 7 1942 268 165 21 32 chr1 177884228 177884322 -19311110 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1942 1850 169 11 58 chr1 177884534 177884916 -19310516 + ORR1D1 LTR MaLR 3 366 -8 7 1942 216 0 0 0 chr1 177885074 177885098 -19310334 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1942 659 75 11 0 chr1 177885361 177885455 -19309977 + (TTTTC)n Simple_repeat Simple_repeat 5 99 0 7 1942 217 103 0 0 chr1 177885456 177885485 -19309947 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 7 1942 1250 64 12 0 chr1 177885485 177885657 -19309775 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 7 1942 266 250 94 94 chr1 177885658 177885764 -19309668 - B1_Mur2 SINE Alu -8 141 36 7 1942 331 310 0 39 chr1 177886014 177886118 -19309314 + B1F2 SINE Alu 12 111 -38 7 1942 21 36 0 0 chr1 177888376 177888404 -19307028 + AT_rich Low_complexity Low_complexity 1 28 0 7 1942 549 256 24 71 chr1 177888425 177888593 -19306839 - RSINE1 SINE B4 0 165 6 7 1942 427 300 54 0 chr1 177888584 177888714 -19306718 - ID_B1 SINE B4 -6 218 82 7 1942 1787 127 83 77 chr1 177889000 177889239 -19306193 + ORR1A2 LTR MaLR 1 264 -63 7 1942 258 0 47 23 chr1 177889239 177889282 -19306150 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1942 1152 64 0 0 chr1 177889292 177889433 -19305999 - B1_Mus2 SINE Alu -6 141 1 7 1942 1787 127 83 77 chr1 177889433 177889507 -19305925 + ORR1A2 LTR MaLR 265 327 0 7 1942 46 33 0 0 chr1 177889748 177889808 -19305624 + AT_rich Low_complexity Low_complexity 1 60 0 7 1942 213 135 0 55 chr1 177889821 177889876 -19305556 + (TTTAA)n Simple_repeat Simple_repeat 3 54 0 7 1942 203 245 0 0 chr1 177891854 177891903 -19303529 + (TCTCTG)n Simple_repeat Simple_repeat 5 53 0 7 1942 588 176 67 93 chr1 177891915 177892065 -19303367 - B1_Mur2 SINE Alu -1 148 3 7 1942 211 172 59 59 chr1 177892608 177892676 -19302756 - MIRb SINE MIR -86 182 115 7 1942 234 91 0 0 chr1 177893131 177893164 -19302268 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1942 405 0 0 0 chr1 177893183 177893228 -19302204 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1942 354 45 0 0 chr1 177894291 177894335 -19301097 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1942 261 325 179 0 chr1 177894784 177894901 -19300531 - MLT1B LTR MaLR -8 459 322 7 1942 917 248 211 23 chr1 177894901 177895252 -19300180 + MTD LTR MaLR 1 417 -2 7 1942 259 298 102 120 chr1 177895252 177895359 -19300073 - MLT1B LTR MaLR -134 256 162 7 1942 301 275 27 0 chr1 177895364 177895462 -19299970 - B1F SINE Alu -5 115 8 7 1942 309 267 198 0 chr1 177895500 177895616 -19299816 - MLT1B LTR MaLR -229 161 23 7 1942 1616 163 52 52 chr1 177895683 177895795 -19299637 + ORR1C2 LTR MaLR 4 130 -254 7 1942 2001 93 96 3 chr1 177895795 177896096 -19299336 + ORR1A4 LTR MaLR 1 329 0 7 1942 1616 163 52 52 chr1 177896096 177896352 -19299080 + ORR1C2 LTR MaLR 131 372 -12 7 1942 207 333 80 11 chr1 177896477 177896565 -19298867 - L2b LINE L2 -20 3355 3262 7 1942 209 108 27 0 chr1 177897528 177897565 -19297867 + (TCTCCC)n Simple_repeat Simple_repeat 5 42 0 7 1942 525 16 0 0 chr1 177897565 177897627 -19297805 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1942 489 271 82 12 chr1 177898035 177898214 -19297218 - MIRb SINE MIR -38 224 41 7 1942 824 236 5 50 chr1 177898547 177898766 -19296666 - B3 SINE B2 0 216 8 7 1942 864 200 0 0 chr1 177898785 177898965 -19296467 + A-rich Low_complexity Low_complexity 1 180 0 7 1942 241 308 95 42 chr1 177898970 177899065 -19296367 + MT2B LTR ERVL 158 257 -344 7 1942 598 202 118 0 chr1 177898980 177899099 -19296333 + B1_Mur3 SINE Alu 6 138 -11 7 1942 216 0 0 0 chr1 177899099 177899123 -19296309 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1942 673 210 7 53 chr1 177899126 177899277 -19296155 + B1_Mur3 SINE Alu 4 147 -2 7 1942 712 226 7 7 chr1 177899427 177899574 -19295858 - B1_Mur2 SINE Alu -1 148 2 7 1942 444 242 7 77 chr1 177899601 177899744 -19295688 - B3A SINE B2 0 198 66 7 1942 3879 17 0 71 chr1 177899745 177899922 -19295510 - L1_Mm LINE L1 -566 5317 5176 7 1942 1672 26 0 0 chr1 177899922 177900111 -19295321 - B2_Mm1a SINE B2 -4 189 1 7 1942 3879 17 0 71 chr1 177900111 177900439 -19294993 - L1_Mm LINE L1 -708 5175 4848 7 1942 337 48 0 0 chr1 177900435 177900477 -19294955 + L1Md_F3 LINE L1 6421 6462 -122 7 1942 23 0 0 0 chr1 177901243 177901266 -19294166 + AT_rich Low_complexity Low_complexity 1 23 0 7 1942 189 178 0 0 chr1 177901310 177901355 -19294077 + (ATG)n Simple_repeat Simple_repeat 2 46 0 7 1942 25 51 0 0 chr1 177901905 177901944 -19293488 + AT_rich Low_complexity Low_complexity 1 39 0 7 1942 648 266 27 55 chr1 177901958 177902141 -19293291 - B3A SINE B2 -19 179 2 7 1942 1265 296 50 54 chr1 177902811 177903311 -19292121 + Lx8 LINE L1 6654 7151 -322 7 1942 226 312 52 10 chr1 177904465 177904562 -19290870 - L2b LINE L2 -252 3123 3023 7 1942 608 329 45 30 chr1 177904616 177904954 -19290478 + ORR1E LTR MaLR 4 366 -13 7 1942 959 277 25 25 chr1 177905168 177905442 -19289990 + B4A SINE B4 1 274 -18 7 1942 252 235 0 0 chr1 177905453 177905521 -19289911 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1942 251 196 0 18 chr1 177907631 177907688 -19287744 - Tigger7 DNA MER2_type -2387 104 49 7 1942 203 61 30 0 chr1 177907894 177907927 -19287505 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 7 1942 25 51 0 0 chr1 177908122 177908161 -19287271 + AT_rich Low_complexity Low_complexity 1 39 0 7 1942 736 252 107 28 chr1 177909095 177909345 -19286087 - MT2B LTR ERVL -83 518 249 7 1942 945 75 19 23 chr1 177909345 177909524 -19285908 + B1_Mus1 SINE Alu 2 148 0 7 1942 243 0 0 0 chr1 177909527 177909554 -19285878 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1942 284 165 9 27 chr1 177909554 177909630 -19285802 - MT2B LTR ERVL -462 122 51 7 1942 447 229 40 56 chr1 177909618 177909743 -19285689 - MT2B LTR ERVL -478 123 1 7 1942 381 51 0 63 chr1 177909754 177909817 -19285615 - B1_Mus2 SINE Alu 0 147 89 7 1942 22 0 0 0 chr1 177909820 177909842 -19285590 + AT_rich Low_complexity Low_complexity 1 22 0 7 1942 6452 95 25 5 chr1 177910761 177912454 -19282978 - L1VL2 LINE L1 -1803 1812 93 7 1942 37 0 0 0 chr1 177912456 177912493 -19282939 + AT_rich Low_complexity Low_complexity 1 37 0 7 1942 247 299 65 0 chr1 177912584 177912597 -19282835 - ID_B1 SINE B4 -128 96 15 7 1942 273 266 16 0 chr1 177912597 177912661 -19282771 - ID4 SINE ID -4 79 15 7 1942 255 321 36 18 chr1 177913056 177913167 -19282265 + RMER15 LTR ERVL 423 535 -40 7 1942 445 250 0 59 chr1 177913359 177913478 -19281954 - PB1D7 SINE Alu 0 120 9 7 1942 768 152 0 0 chr1 177915353 177915485 -19279947 + (TA)n Simple_repeat Simple_repeat 2 133 0 7 1942 1247 278 38 3 chr1 177915869 177916215 -19279217 + MTE2b LTR MaLR 1 358 -21 7 1942 198 0 0 0 chr1 177916461 177916483 -19278949 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1942 362 21 21 0 chr1 177916483 177916529 -19278903 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1942 1858 197 64 15 chr1 177916671 177917178 -19278254 + RMER4B LTR ERVK 19 585 0 7 1942 684 56 0 0 chr1 177917505 177917594 -19277838 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 7 1942 1137 51 0 14 chr1 177917594 177917728 -19277704 - B1_Mm SINE Alu -12 135 2 7 1942 303 229 0 28 chr1 177917785 177917857 -19277575 - ID4_ SINE ID -13 70 1 7 1942 594 226 75 0 chr1 177918442 177918575 -19276857 - B1F SINE Alu -6 143 1 7 1942 315 0 0 0 chr1 177918897 177918932 -19276500 + (CATAT)n Simple_repeat Simple_repeat 1 35 0 7 1942 183 80 0 0 chr1 177919628 177919653 -19275779 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1942 241 257 200 0 chr1 177919797 177919902 -19275530 + L1M5 LINE L1 5451 5576 -597 7 1942 812 302 84 45 chr1 177919910 177920447 -19274985 + L1MB7 LINE L1 5618 6175 -9 7 1942 201 167 0 0 chr1 177921219 177921255 -19274177 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 7 1942 249 219 31 15 chr1 177921481 177921546 -19273886 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 7 1942 4281 88 32 10 chr1 177922038 177922637 -19272795 + L1_Mus3 LINE L1 6024 6635 -3 7 1942 1172 272 117 20 chr1 177923504 177923898 -19271534 + Lx8 LINE L1 6946 7377 -96 7 1942 377 291 135 39 chr1 177924517 177924724 -19270708 + MIR SINE MIR 2 228 -34 7 1942 720 157 111 35 chr1 177924734 177924906 -19270526 + Lx3C LINE L1 6789 6973 -3 7 1942 357 24 0 0 chr1 177925575 177925617 -19269815 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 7 1942 809 225 29 7 chr1 177926171 177926360 -19269072 - B3A SINE B2 -7 209 10 7 1942 534 286 56 0 chr1 177926431 177926592 -19268840 - B3 SINE B2 -46 170 1 7 1942 196 323 0 0 chr1 177927495 177927557 -19267875 + MIRc SINE MIR 44 105 -163 7 1942 845 240 133 103 chr1 177927562 177927808 -19267624 + MER90a LTR ERV1 1 216 -398 7 1942 198 71 0 0 chr1 177927808 177927836 -19267596 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1942 845 240 133 103 chr1 177927836 177928085 -19267347 + MER90a LTR ERV1 217 511 -103 7 1942 291 305 19 19 chr1 177928948 177929055 -19266377 - ORR1E LTR MaLR -9 370 264 7 1942 296 330 66 0 chr1 177929183 177929289 -19266143 - ORR1E LTR MaLR -244 115 3 7 1942 275 286 20 30 chr1 177930372 177930473 -19264959 - L1M2 LINE L1 -495 5805 5706 7 1942 555 225 15 0 chr1 177930672 177930794 -19264638 - B1_Mur1 SINE Alu 0 149 28 7 1942 1550 48 0 16 chr1 177931380 177931571 -19263861 - B2_Mm1a SINE B2 -4 189 2 7 1942 2017 284 36 21 chr1 177931669 177932328 -19263104 + Lx9 LINE L1 6772 7440 -204 7 1942 370 0 40 0 chr1 177932339 177932389 -19263043 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1942 289 170 30 69 chr1 177932402 177932503 -19262929 + Lx9 LINE L1 7547 7643 -1 7 1942 205 228 0 50 chr1 177932520 177932564 -19262868 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1942 1301 238 82 40 chr1 177932564 177932918 -19262514 - ORR1D2 LTR MaLR -1 369 1 8 1942 205 228 0 50 chr1 177932918 177932933 -19262499 + (TA)n Simple_repeat Simple_repeat 1 14 0 8 1942 387 0 0 0 chr1 177932935 177932978 -19262454 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1942 21 0 0 0 chr1 177934439 177934460 -19260972 + AT_rich Low_complexity Low_complexity 1 21 0 8 1942 1124 111 6 0 chr1 177936566 177936738 -19258694 + B2_Mm1a SINE B2 1 173 -20 8 1942 1021 218 23 23 chr1 177937360 177937576 -19257856 - B3 SINE B2 0 216 1 8 1942 305 307 109 50 chr1 177937995 177938636 -19256796 - L1MD LINE L1 -532 5632 4924 8 1942 651 268 17 12 chr1 177938641 177938861 -19256571 - B3A SINE B2 -2 214 2 8 1942 381 335 67 22 chr1 177938900 177939234 -19256198 - L1MD LINE L1 -1261 4885 4539 8 1942 553 340 34 38 chr1 177939337 177939365 -19256067 - B4A SINE B4 0 292 271 8 1942 522 79 0 0 chr1 177939365 177939441 -19255991 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1942 553 340 34 38 chr1 177939441 177939705 -19255727 - B4A SINE B4 -22 270 1 8 1942 925 181 78 110 chr1 177939720 177939938 -19255494 - B3 SINE B2 0 216 6 8 1942 460 288 8 8 chr1 177939981 177940107 -19255325 + Lx7 LINE L1 5611 5736 -1960 8 1942 1600 181 45 33 chr1 177940107 177940444 -19254988 - ORR1B2 LTR MaLR -26 341 1 8 1942 349 247 103 2 chr1 177940465 177940598 -19254834 + Lx5 LINE L1 5726 5907 -1143 8 1942 240 250 0 0 chr1 177940601 177940665 -19254767 + (CATA)n Simple_repeat Simple_repeat 3 66 0 8 1942 1051 317 81 56 chr1 177941036 177941402 -19254030 - L1MEg LINE L1 -1828 5113 4710 8 1942 541 282 6 47 chr1 177941402 177941573 -19253859 + RSINE1 SINE B4 2 165 0 8 1942 1051 317 81 56 chr1 177941573 177942146 -19253286 - L1MEg LINE L1 -2232 4709 4151 8 1942 334 325 57 29 chr1 177942280 177942749 -19252683 - L1MEg LINE L1 -5023 2014 1370 8 1942 754 262 26 10 chr1 177944542 177944735 -19250697 + Lx9 LINE L1 7093 7288 -356 8 1942 890 220 16 16 chr1 177944878 177945063 -19250369 - B3 SINE B2 -30 186 2 8 1942 2270 159 63 0 chr1 177945187 177945583 -19249849 + MTC LTR MaLR 1 421 0 8 1942 349 245 167 35 chr1 177945800 177945944 -19249488 + RSINE1 SINE B4 3 165 0 8 1942 370 263 151 43 chr1 177947220 177947544 -19247888 - L1MA4 LINE L1 -126 6174 5817 8 1942 668 194 7 0 chr1 177947544 177947688 -19247744 + CT-rich Low_complexity Low_complexity 2 146 0 8 1942 392 135 159 5 chr1 177947688 177947803 -19247629 - B2_Mm2 SINE B2 0 195 46 8 1942 1086 99 37 0 chr1 177947834 177947995 -19247437 - B2_Mm2 SINE B2 -26 169 3 8 1942 616 230 94 37 chr1 177947996 177948291 -19247141 - L1MA4 LINE L1 -469 5831 5511 8 1942 869 187 100 16 chr1 177948349 177948390 -19247042 + Lx9 LINE L1 7270 7310 -334 8 1942 303 28 0 0 chr1 177948390 177948426 -19247006 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1942 869 187 100 16 chr1 177948426 177948574 -19246858 + Lx9 LINE L1 7311 7474 -170 8 1942 2218 137 19 25 chr1 177949193 177949559 -19245873 + ORR1B2 LTR MaLR 4 367 0 8 1942 2480 167 102 63 chr1 177950834 177951434 -19243998 + RMER20B LTR ERVK 5 627 0 8 1942 534 250 317 34 chr1 177951449 177951673 -19243759 - B4A SINE B4 -3 289 2 8 1942 228 35 0 0 chr1 177951692 177951721 -19243711 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 8 1942 414 302 46 31 chr1 177951738 177951868 -19243564 - ID_B1 SINE B4 -12 212 81 8 1942 657 200 14 0 chr1 177952039 177952184 -19243248 + URR1B DNA MER1_type 79 225 0 8 1942 408 249 159 28 chr1 177952383 177952565 -19242867 + MER33 DNA MER1_type 17 222 -102 8 1942 558 287 0 27 chr1 177952623 177952770 -19242662 - RSINE1 SINE B4 -18 147 5 8 1942 29 0 0 0 chr1 177952774 177952803 -19242629 + AT_rich Low_complexity Low_complexity 1 29 0 8 1942 1231 48 0 0 chr1 177952929 177953075 -19242357 - B1_Mm SINE Alu 0 147 2 8 1942 279 79 0 0 chr1 177954687 177954725 -19240707 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1942 201 39 0 0 chr1 177955345 177955371 -19240061 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 1942 10322 162 55 74 chr1 177956223 177957460 -19237972 + RMER16-int LTR ERVK 1666 2869 -2537 8 1942 423 0 0 0 chr1 177957460 177957507 -19237925 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 8 1942 10322 171 53 69 chr1 177957507 177958678 -19236754 + RMER16-int LTR ERVK 2870 3866 -1540 8 1942 259 213 40 69 chr1 177958840 177958941 -19236491 + RMER16-int LTR ERVK 6336 6433 -973 8 1942 334 192 27 27 chr1 177959135 177959210 -19236222 + RMER16-int LTR ERVK 7330 7404 -2 8 1942 2463 102 19 8 chr1 177959211 177959575 -19235857 + RLTR9A LTR ERVK 1 368 0 8 1942 982 243 48 65 chr1 177961844 177962196 -19233236 - MTEa LTR MaLR 0 379 34 8 1942 327 321 96 98 chr1 177962524 177962787 -19232645 + MER31B LTR ERV1 1 264 -202 8 1942 5535 33 18 1 chr1 177962787 177963449 -19231983 - L1Md_F3 LINE L1 0 6584 5912 8 1942 327 321 96 98 chr1 177963449 177963551 -19231881 + MER31B LTR ERV1 265 365 -101 8 1942 261 0 0 0 chr1 177963723 177963752 -19231680 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1942 205 339 62 8 chr1 177964621 177964749 -19230683 + L3 LINE CR1 4320 4454 -35 8 1942 2220 155 48 15 chr1 177965470 177965864 -19229568 + MTB_Mm LTR MaLR 1 407 0 8 1942 255 330 32 21 chr1 177965974 177966067 -19229365 + MER89 LTR ERV1 188 281 -278 8 1942 216 322 89 16 chr1 177966580 177966703 -19228729 - MIRb SINE MIR -120 148 17 8 1942 265 241 92 116 chr1 177966930 177967094 -19228338 + RSINE1 SINE B4 2 161 -4 8 1942 595 294 52 166 chr1 177967977 177968303 -19227129 + B4 SINE B4 2 290 -2 8 1942 243 0 0 0 chr1 177968306 177968333 -19227099 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1942 3190 58 10 0 chr1 177969298 177969694 -19225738 + MTB LTR MaLR 1 400 0 8 1942 2057 158 22 54 chr1 177971806 177972213 -19223219 + ORR1B1 LTR MaLR 1 394 0 8 1942 411 284 41 82 chr1 177972533 177972645 -19222787 + B3A SINE B2 54 163 -35 8 1942 429 110 0 0 chr1 177972645 177972718 -19222714 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1942 411 284 41 82 chr1 177972718 177972751 -19222681 + B3A SINE B2 164 193 -5 8 1942 1980 212 115 48 chr1 177973223 177973759 -19221673 + RLTR40 LTR ERVK 40 576 -241 8 1942 185 65 0 31 chr1 177973759 177973791 -19221641 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 8 1942 1980 212 115 48 chr1 177973791 177973948 -19221484 + RLTR40 LTR ERVK 577 780 -37 8 1942 266 256 12 37 chr1 177976627 177976708 -19218724 + ID4 SINE ID 2 80 -3 8 1942 489 121 0 0 chr1 177976708 177976791 -19218641 + (CAGAC)n Simple_repeat Simple_repeat 5 87 0 8 1942 366 269 43 9 chr1 177976986 177977102 -19218330 - MLT1C LTR MaLR -346 121 2 8 1942 444 356 32 55 chr1 177977739 177977959 -19217473 - MLT1A0 LTR MaLR -2 363 149 8 1942 405 236 63 45 chr1 177977959 177978070 -19217362 - PB1D10 SINE Alu -20 129 17 8 1942 414 0 0 0 chr1 177978610 177978656 -19216776 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1942 234 0 0 0 chr1 177978656 177978681 -19216751 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1942 3599 147 129 75 chr1 177978769 177979613 -19215819 + RMER19B LTR ERVK 1 890 -12 8 1942 239 294 278 59 chr1 177980033 177980263 -19215169 + B4 SINE B4 2 281 -11 8 1942 284 254 35 7 chr1 177980278 177980421 -19215011 + (CATATA)n Simple_repeat Simple_repeat 4 150 0 8 1942 465 245 19 10 chr1 177981636 177981739 -19213693 - PB1D9 SINE Alu 0 120 17 8 1942 1161 243 48 27 chr1 177982048 177982378 -19213054 + ORR1E LTR MaLR 19 355 -4 8 1942 29 47 0 0 chr1 177982729 177982772 -19212660 + AT_rich Low_complexity Low_complexity 1 43 0 8 1942 238 254 91 0 chr1 177983036 177983091 -19212341 + 5S rRNA rRNA 14 73 -48 8 1942 183 80 0 0 chr1 177983561 177983586 -19211846 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 8 1942 333 68 0 0 chr1 177984037 177984081 -19211351 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1942 1409 47 10 25 chr1 177984273 177984471 -19210961 + MTB_Mm LTR MaLR 1 195 -212 8 1942 6611 54 0 0 chr1 177984471 177985280 -19210152 - L1_Mm LINE L1 -788 5095 4287 8 1942 3282 57 21 5 chr1 177985282 177985705 -19209727 + L1Md_F2 LINE L1 6153 6582 0 8 1942 1096 22 0 0 chr1 177985718 177985855 -19209577 + MTB_Mm LTR MaLR 182 318 -82 8 1942 3949 75 0 4 chr1 177986687 177987206 -19208226 - L1_Mus4 LINE L1 0 6636 6120 8 1942 1415 73 0 0 chr1 177987206 177987384 -19208048 + L1_Mus4 LINE L1 5766 5943 -693 8 1942 468 0 0 0 chr1 177987800 177987852 -19207580 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 8 1942 302 337 126 0 chr1 177988268 177988443 -19206989 + MLT1A0 LTR MaLR 120 316 -49 8 1942 21 36 0 0 chr1 177988504 177988532 -19206900 + AT_rich Low_complexity Low_complexity 1 28 0 8 1942 261 323 79 24 chr1 177989625 177989790 -19205642 + LTR41B LTR ERVL 8 181 -577 8 1942 585 0 0 0 chr1 177989823 177989888 -19205544 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1942 260 254 0 127 chr1 177990050 177990176 -19205256 - MER53 DNA hAT -3 190 81 8 1942 316 278 134 0 chr1 177990333 177990430 -19205002 + LTR41B LTR ERVL 462 571 -187 8 1942 2156 138 58 56 chr1 177990637 177991030 -19204402 + ORR1B1 LTR MaLR 1 394 0 8 1942 311 269 76 9 chr1 177991643 177991748 -19203684 - RMER12 LTR ERVK -476 846 735 8 1942 1418 82 16 0 chr1 177991825 177992008 -19203424 - B2_Mm2 SINE B2 -8 187 2 8 1942 225 94 0 0 chr1 177992393 177992425 -19203007 + (TA)n Simple_repeat Simple_repeat 1 32 0 8 1942 379 281 122 11 chr1 177992426 177992606 -19202826 - L1M5 LINE L1 -3313 2833 2634 8 1942 362 377 78 6 chr1 177992678 177993038 -19202394 - L1M5 LINE L1 -3633 2513 2128 8 1942 279 367 50 64 chr1 177993288 177993832 -19201600 + L2 LINE L2 2293 2828 -591 8 1942 1266 78 0 0 chr1 177993898 177994078 -19201354 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 1942 1442 131 18 5 chr1 177994105 177994328 -19201104 + URR1A DNA MER1_type 1 226 0 8 1942 22 35 0 0 chr1 177994454 177994483 -19200949 + AT_rich Low_complexity Low_complexity 1 29 0 8 1942 249 33 0 0 chr1 177994501 177994531 -19200901 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1942 841 292 46 8 chr1 177994533 177994792 -19200640 - B4A SINE B4 -20 272 4 8 1942 382 296 30 10 chr1 177994807 177994906 -19200526 + B3A SINE B2 60 160 -38 8 1942 409 112 0 48 chr1 177994912 177994996 -19200436 + CT-rich Low_complexity Low_complexity 1 80 0 8 1943 192 77 0 0 chr1 177995819 177995845 -19199587 + (TTA)n Simple_repeat Simple_repeat 2 27 0 8 1943 623 234 0 72 chr1 177995853 177996005 -19199427 - B1_Mur2 SINE Alu -8 141 1 8 1943 414 0 0 0 chr1 177996028 177996074 -19199358 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1943 882 182 0 0 chr1 177996075 177996223 -19199209 + B1_Mus1 SINE Alu 1 148 0 8 1943 634 225 11 0 chr1 177996505 177996683 -19198749 + (CCA)n Simple_repeat Simple_repeat 1 180 0 9 1943 209 210 16 0 chr1 177996691 177996753 -19198679 + (CACCAT)n Simple_repeat Simple_repeat 5 67 0 9 1943 435 19 0 0 chr1 177996754 177996806 -19198626 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1943 22 0 0 0 chr1 177996857 177996879 -19198553 + AT_rich Low_complexity Low_complexity 1 22 0 9 1943 1255 41 0 0 chr1 177996879 177997025 -19198407 - B1_Mm SINE Alu 0 147 2 9 1943 318 255 44 14 chr1 177997749 177997855 -19197577 + MLT1A1 LTR MaLR 272 396 -12 9 1943 1487 142 8 8 chr1 177998928 177999177 -19196255 + ORR1A4 LTR MaLR 1 249 -80 9 1943 232 292 41 5 chr1 177999260 177999381 -19196051 - MIRc SINE MIR -76 192 64 9 1943 643 248 75 0 chr1 178000449 178000582 -19194850 + B1F SINE Alu 1 143 -6 1 1943 396 289 67 0 chr1 178000903 178001007 -19194425 + PB1 SINE Alu 10 120 -7 2 1943 501 17 0 0 chr1 178001114 178001172 -19194260 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 3 1943 235 258 116 21 chr1 178001204 178001299 -19194133 + MLT1A1 LTR MaLR 3 106 -259 4 1943 502 305 101 5 chr1 178001311 178001499 -19193933 + MLT1A1 LTR MaLR 190 395 -13 4 1943 515 196 27 0 chr1 178001520 178001668 -19193764 + (TCCA)n Simple_repeat Simple_repeat 3 154 0 5 1943 647 262 28 0 chr1 178002773 178002914 -19192518 + B1F2 SINE Alu 5 149 0 6 1943 2316 16 0 0 chr1 178003475 178003725 -19191707 + L1Md_T LINE L1 6333 6582 0 7 1943 306 107 0 0 chr1 178006048 178006104 -19189328 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1943 736 258 6 0 chr1 178006119 178006278 -19189154 - B3A SINE B2 -38 160 1 9 1943 1143 241 23 26 chr1 178006732 178006996 -19188436 + MTE2b LTR MaLR 117 379 0 1 1943 832 290 59 28 chr1 178007329 178007583 -19187849 - B4 SINE B4 -10 282 50 1 1943 2215 110 84 0 chr1 178007583 178007939 -19187493 + ORR1B1 LTR MaLR 1 386 -8 1 1943 308 204 0 0 chr1 178007943 178007997 -19187435 - B4 SINE B4 -238 54 1 1 1943 230 152 33 17 chr1 178008215 178008275 -19187157 + (CAA)n Simple_repeat Simple_repeat 2 62 0 1 1943 303 28 0 0 chr1 178008722 178008758 -19186674 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1943 380 285 79 145 chr1 178008813 178009207 -19186225 - RLTR40 LTR ERVK -413 404 37 1 1943 1748 152 47 80 chr1 178010086 178010451 -19184981 + ORR1B1 LTR MaLR 42 394 0 1 1943 240 286 14 0 chr1 178010490 178010560 -19184872 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 1 1943 211 28 56 0 chr1 178010644 178010680 -19184752 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1943 335 282 9 0 chr1 178011318 178011428 -19184004 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1943 258 311 27 45 chr1 178011596 178011707 -19183725 + PB1D9 SINE Alu 10 118 -2 2 1943 749 74 19 0 chr1 178011737 178011845 -19183587 + (GGAGA)n Simple_repeat Simple_repeat 2 111 0 2 1943 219 282 0 0 chr1 178012236 178012307 -19183125 + (CAGAGA)n Simple_repeat Simple_repeat 5 75 0 2 1943 182 37 0 36 chr1 178012378 178012406 -19183026 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 2 1943 213 293 127 54 chr1 178012984 178013150 -19182282 + MER5B DNA MER1_type 1 178 0 2 1943 828 185 0 0 chr1 178013231 178013393 -19182039 + CT-rich Low_complexity Low_complexity 5 166 0 2 1943 837 34 59 8 chr1 178013427 178013545 -19181887 - L1Md_F3 LINE L1 -1 6583 6460 2 1943 693 0 0 0 chr1 178013545 178013622 -19181810 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 2 1943 1213 70 7 0 chr1 178013625 178013768 -19181664 - B1_Mm SINE Alu -2 145 2 2 1943 216 357 17 25 chr1 178013944 178014062 -19181370 - MIRb SINE MIR -71 197 81 2 1943 917 279 73 34 chr1 178014494 178014876 -19180556 + L1MA6 LINE L1 5823 6219 -81 3 1943 207 0 0 0 chr1 178014876 178014899 -19180533 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 1943 676 292 102 48 chr1 178014899 178014956 -19180476 + L1MA7 LINE L1 6211 6285 -6 3 1943 236 242 121 0 chr1 178015495 178015506 -19179926 - B4A SINE B4 -137 155 86 3 1943 257 274 0 0 chr1 178015506 178015557 -19179875 - B1F1 SINE Alu -98 51 1 3 1943 321 26 0 0 chr1 178015856 178015894 -19179538 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1943 226 265 14 14 chr1 178016220 178016289 -19179143 - MIR SINE MIR -131 131 63 3 1943 778 287 58 36 chr1 178016990 178017268 -19178164 + B4 SINE B4 9 292 0 3 1943 226 203 65 48 chr1 178017711 178017773 -19177659 + ZP3AR Satellite Satellite 42 104 -108 3 1943 740 324 38 0 chr1 178017719 178017929 -19177503 + ID_B1 SINE B4 6 223 -1 3 1943 279 219 10 20 chr1 178017931 178018029 -19177403 + GA-rich Low_complexity Low_complexity 4 100 0 4 1943 474 200 150 0 chr1 178018129 178018249 -19177183 + B1_Mur2 SINE Alu 1 138 -11 4 1943 345 24 0 0 chr1 178018249 178018291 -19177141 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1943 400 328 63 87 chr1 178018304 178018558 -19176874 + MLT1H-int LTR MaLR 986 1233 -176 4 1943 227 375 101 27 chr1 178018750 178018898 -19176534 + MLT1H LTR MaLR 136 294 -255 4 1943 333 0 0 0 chr1 178020186 178020223 -19175209 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 1943 387 0 0 0 chr1 178020303 178020346 -19175086 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1943 780 189 7 43 chr1 178020795 178020933 -19174499 + B1_Mur4 SINE Alu 3 135 -15 4 1943 452 220 15 15 chr1 178021134 178021268 -19174164 - Lx9 LINE L1 -7 7637 7504 4 1943 242 366 14 0 chr1 178021418 178021430 -19174002 + ID4 SINE ID 2 73 -10 4 1943 251 322 0 0 chr1 178021430 178021489 -19173943 + tRNA-Ala-GCA tRNA tRNA 9 67 -8 4 1943 252 158 0 0 chr1 178023066 178023123 -19172309 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1943 273 238 18 18 chr1 178023202 178023369 -19172063 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1943 184 243 18 0 chr1 178023395 178023506 -19171926 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 1943 403 269 118 12 chr1 178024287 178024456 -19170976 + Charlie4a DNA MER1_type 18 204 -304 5 1943 260 279 14 14 chr1 178024449 178024518 -19170914 + B1_Mus1 SINE Alu 19 87 -61 5 1943 836 255 135 29 chr1 178024587 178024971 -19170461 + Lx8 LINE L1 6990 7414 -59 5 1943 1711 134 126 10 chr1 178025395 178025705 -19169727 + ORR1B1 LTR MaLR 41 386 -8 5 1943 729 237 45 6 chr1 178026545 178026702 -19168730 - RSINE1 SINE B4 -1 164 2 5 1943 345 252 16 108 chr1 178027250 178027379 -19168053 + PB1D10 SINE Alu 1 117 0 5 1943 195 191 0 0 chr1 178027381 178027449 -19167983 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1943 323 23 23 0 chr1 178027449 178027493 -19167939 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1943 261 0 0 0 chr1 178027556 178027585 -19167847 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 6 1943 358 205 12 37 chr1 178027660 178027741 -19167691 - ID4_ SINE ID -2 81 3 6 1943 203 184 26 0 chr1 178027893 178027931 -19167501 + GA-rich Low_complexity Low_complexity 5 43 0 6 1943 261 0 0 0 chr1 178028021 178028050 -19167382 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1943 572 214 0 49 chr1 178028313 178028436 -19166996 + PB1D10 SINE Alu 1 117 0 6 1943 414 0 0 0 chr1 178028913 178028959 -19166473 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1943 357 24 0 0 chr1 178029722 178029764 -19165668 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 6 1943 453 291 21 106 chr1 178029789 178029931 -19165501 - PB1D10 SINE Alu -14 135 6 6 1943 397 325 33 19 chr1 178030180 178030393 -19165039 - L1MC4 LINE L1 -493 7549 7334 6 1943 231 0 0 0 chr1 178030570 178030605 -19164827 - L1_Mus4 LINE L1 -6 6630 6596 6 1943 537 93 0 39 chr1 178030605 178030707 -19164725 - L1Md_F2 LINE L1 -1 6635 6477 7 1943 1938 75 0 0 chr1 178030704 178030944 -19164488 - L1_Mus1 LINE L1 -174 6393 6154 7 1943 7108 92 4 4 chr1 178030945 178031915 -19163517 - L1_Mus4 LINE L1 -45 6591 5622 7 1943 20778 150 19 3 chr1 178031908 178033401 -19162031 - L1VL4 LINE L1 -1043 4840 3309 7 1943 225 0 0 0 chr1 178033401 178033426 -19162006 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1943 20778 161 20 11 chr1 178033426 178036202 -19159230 - L1VL4 LINE L1 -2575 3308 527 7 1943 333 0 0 0 chr1 178036421 178036458 -19158974 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1943 358 252 34 59 chr1 178036468 178036586 -19158846 - PB1D10 SINE Alu -2 115 1 7 1943 694 206 35 46 chr1 178036597 178036770 -19158662 - B3A SINE B2 0 198 28 7 1943 225 0 0 0 chr1 178036874 178036899 -19158533 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1943 376 241 58 0 chr1 178036899 178036986 -19158446 - PB1D7 SINE Alu -8 112 21 7 1943 180 0 0 0 chr1 178037251 178037271 -19158161 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 8 1943 1235 215 78 46 chr1 178037406 178037821 -19157611 - MT2A LTR ERVL -55 546 1 8 1943 305 296 0 0 chr1 178038328 178038399 -19157033 + ID4_ SINE ID 3 73 -10 8 1943 236 283 21 11 chr1 178038399 178038492 -19156940 + GA-rich Low_complexity Low_complexity 3 96 0 8 1943 23 0 0 0 chr1 178038626 178038649 -19156783 + AT_rich Low_complexity Low_complexity 1 23 0 8 1943 591 246 188 30 chr1 178039680 178040040 -19155392 - MTD LTR MaLR -14 405 1 8 1943 401 250 33 120 chr1 178040458 178040608 -19154824 - ID_B1 SINE B4 -7 217 81 8 1943 229 322 106 79 chr1 178040978 178041167 -19154265 + MamGypLTR1b LTR Gypsy 105 298 -484 8 1943 409 242 32 48 chr1 178041829 178041955 -19153477 - PB1 SINE Alu -2 125 2 8 1943 243 268 111 20 chr1 178042063 178042162 -19153270 - PB1D10 SINE Alu -7 110 3 8 1943 180 0 0 0 chr1 178042797 178042817 -19152615 + (TGG)n Simple_repeat Simple_repeat 1 20 0 9 1943 660 248 175 6 chr1 178042936 178043200 -19152232 - L1MA6 LINE L1 -17 6283 5981 9 1943 698 290 87 16 chr1 178043266 178043593 -19151839 - L1MA6 LINE L1 -260 6040 5650 9 1943 21 36 0 0 chr1 178044281 178044309 -19151123 + AT_rich Low_complexity Low_complexity 1 28 0 9 1943 1160 80 0 0 chr1 178044708 178044845 -19150587 + B1_Mm SINE Alu 1 137 -10 9 1943 24 53 0 0 chr1 178044874 178044912 -19150520 + AT_rich Low_complexity Low_complexity 1 38 0 9 1943 200 143 57 0 chr1 178044935 178045005 -19150427 + (TA)n Simple_repeat Simple_repeat 2 75 0 9 1943 305 262 111 12 chr1 178045116 178045197 -19150235 - PB1D10 SINE Alu -7 110 22 9 1943 427 90 8 76 chr1 178045371 178045503 -19149929 + GA-rich Low_complexity Low_complexity 5 127 0 9 1943 1166 116 126 0 chr1 178046411 178046601 -19148831 + URR1A DNA MER1_type 7 220 -6 9 1943 602 333 13 0 chr1 178046955 178047114 -19148318 - RSINE1 SINE B4 -2 163 3 9 1943 2127 146 18 10 chr1 178047546 178047902 -19147530 - ORR1A1 LTR MaLR 0 379 1 1 1943 22 0 0 0 chr1 178048611 178048633 -19146799 + AT_rich Low_complexity Low_complexity 1 22 0 1 1943 279 282 28 14 chr1 178049867 178049939 -19145493 - ID SINE ID -149 75 3 1 1943 323 257 51 68 chr1 178051468 178051585 -19143847 + ORR1E LTR MaLR 21 135 -224 1 1943 339 276 0 0 chr1 178051704 178051783 -19143649 - B1F1 SINE Alu -61 88 10 1 1943 1220 171 14 9 chr1 178051984 178052197 -19143235 - URR1B DNA MER1_type 0 225 12 1 1943 490 358 122 29 chr1 178052277 178052622 -19142810 + Tigger7 DNA MER2_type 6 382 -2109 1 1943 1207 241 51 22 chr1 178052935 178053211 -19142221 - B4A SINE B4 -8 284 1 1 1943 384 276 0 0 chr1 178053342 178053440 -19141992 + Tigger7 DNA MER2_type 380 477 -2014 1 1943 212 316 0 0 chr1 178053800 178053857 -19141575 - RSINE1 SINE B4 -99 66 10 1 1943 402 331 15 7 chr1 178055261 178055398 -19140034 + B4A SINE B4 2 139 -153 1 1943 562 296 40 53 chr1 178055523 178055751 -19139681 + B4A SINE B4 67 291 -1 1 1943 288 0 0 0 chr1 178056636 178056668 -19138764 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1943 3051 73 34 25 chr1 178057026 178057433 -19137999 - L1Md_F2 LINE L1 0 6582 6172 1 1943 528 302 80 31 chr1 178057724 178058011 -19137421 + LTR48 LTR ERV1 464 764 -23 1 1943 958 160 194 5 chr1 178058247 178058398 -19137034 + ORR1B2 LTR MaLR 1 151 -216 1 1943 384 22 0 0 chr1 178058398 178058443 -19136989 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1943 958 160 194 5 chr1 178058443 178058492 -19136940 + ORR1B2 LTR MaLR 152 239 -128 1 1943 325 310 14 0 chr1 178058916 178058987 -19136445 + ID SINE ID 3 74 -150 1 1943 367 235 0 0 chr1 178059091 178059159 -19136273 + ID4 SINE ID 2 69 -14 1 1943 243 324 14 14 chr1 178059353 178059425 -19136007 + ID4_ SINE ID 1 72 -11 1 1943 217 323 0 0 chr1 178060136 178060198 -19135234 - ID SINE ID -157 67 6 1 1943 404 331 0 0 chr1 178060297 178060424 -19135008 + ID_B1 SINE B4 94 220 -4 1 1943 239 229 27 54 chr1 178060499 178060573 -19134859 - MLT1A1 LTR MaLR -12 396 325 1 1943 381 383 14 52 chr1 178060664 178060876 -19134556 - ORR1E LTR MaLR -154 205 2 1 1943 203 362 89 35 chr1 178060996 178061165 -19134267 - MIRb SINE MIR -56 212 35 1 1943 796 314 0 0 chr1 178061469 178061679 -19133753 - B3 SINE B2 -6 210 1 1 1943 549 99 0 0 chr1 178062886 178062967 -19132465 + (GGA)n Simple_repeat Simple_repeat 1 81 0 1 1943 194 143 20 0 chr1 178063039 178063088 -19132344 + CT-rich Low_complexity Low_complexity 1 50 0 1 1943 234 0 0 0 chr1 178063089 178063115 -19132317 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1943 1326 92 0 0 chr1 178063214 178063443 -19131989 + (TC)n Simple_repeat Simple_repeat 1 229 0 1 1943 480 35 0 0 chr1 178063443 178063501 -19131931 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1 1943 1227 58 0 0 chr1 178063503 178063642 -19131790 - B1_Mus2 SINE Alu -7 140 2 1 1943 390 297 81 0 chr1 178063658 178063769 -19131663 - B4A SINE B4 -118 174 55 1 1943 1000 154 196 5 chr1 178064845 178065034 -19130398 + URR1A DNA MER1_type 2 226 0 1 1943 599 218 16 8 chr1 178065083 178065208 -19130224 + RSINE1 SINE B4 3 128 -37 1 1943 481 227 96 102 chr1 178066834 178066991 -19128441 + B3A SINE B2 43 198 0 1 1943 307 0 23 23 chr1 178067176 178067220 -19128212 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1943 399 239 0 0 chr1 178068763 178068834 -19126598 + RSINE1 SINE B4 1 71 -94 1 1943 2055 142 35 18 chr1 178068847 178069190 -19126242 - ORR1B1 LTR MaLR -5 389 41 1 1943 227 321 0 0 chr1 178069192 178069245 -19126187 + RSINE1 SINE B4 76 128 -37 1 1943 393 86 0 0 chr1 178069280 178069338 -19126094 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1 1943 4152 74 2 49 chr1 178070230 178070799 -19124633 + L1_Mus2 LINE L1 6020 6561 -5 1 1943 340 286 0 95 chr1 178070811 178070927 -19124505 - PB1D10 SINE Alu -12 105 1 1 1943 553 287 6 25 chr1 178070988 178071149 -19124283 - MER5A DNA MER1_type -6 183 26 1 1943 478 226 43 20 chr1 178071187 178071381 -19124051 - MER44B DNA MER2_type -24 526 296 1 1943 388 319 26 0 chr1 178071393 178071506 -19123926 - PB1D10 SINE Alu 0 117 2 1 1943 439 268 169 37 chr1 178071545 178071888 -19123544 - L1MA4A LINE L1 -384 5919 5402 1 1943 753 251 30 70 chr1 178071904 178072105 -19123327 - B3A SINE B2 -1 197 5 1 1943 266 250 65 28 chr1 178072106 178072213 -19123219 - L1M5 LINE L1 -721 5443 5333 1 1943 1361 20 0 0 chr1 178072299 178072446 -19122986 + B1_Mm SINE Alu 1 147 0 1 1943 198 0 0 0 chr1 178072446 178072468 -19122964 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1943 788 216 117 10 chr1 178072469 178072665 -19122767 - B4 SINE B4 -69 223 7 1 1943 350 349 86 15 chr1 178072677 178073003 -19122429 - L1M2 LINE L1 -787 5356 5008 1 1943 273 253 49 74 chr1 178073003 178073084 -19122348 - PB1D9 SINE Alu -17 103 25 1 1943 635 189 129 5 chr1 178074172 178074358 -19121074 - Lx9 LINE L1 -2 7642 7434 1 1943 470 266 68 43 chr1 178074477 178074637 -19120795 + RMER20B LTR ERVK 1 160 -356 1 1943 699 326 75 32 chr1 178074667 178075173 -19120259 + L1M5 LINE L1 2497 3024 -3122 1 1943 279 203 0 0 chr1 178076159 178076223 -19119209 + (ATTG)n Simple_repeat Simple_repeat 4 67 0 1 1943 271 325 13 0 chr1 178076224 178076301 -19119131 - ID4 SINE ID -4 79 2 1 1943 185 0 40 0 chr1 178077585 178077610 -19117822 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1943 989 178 11 17 chr1 178077967 178078144 -19117288 + MTEa LTR MaLR 8 183 -196 1 1943 1615 185 86 21 chr1 178078160 178078467 -19116965 + ORR1B1 LTR MaLR 1 329 -65 1 1943 279 233 17 0 chr1 178078467 178078527 -19116905 - RLTR25A LTR ERVK 0 1028 968 1 1943 4024 186 30 84 chr1 178078530 178079423 -19116009 - RLTR25A LTR ERVK -258 845 1 1 1943 494 76 0 0 chr1 178079423 178079489 -19115943 + ORR1B1 LTR MaLR 329 394 0 1 1943 692 213 21 75 chr1 178079494 178079682 -19115750 + MTEa LTR MaLR 199 376 -3 1 1943 282 29 0 0 chr1 178079808 178079843 -19115589 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1943 807 234 0 84 chr1 178080096 178080311 -19115121 + B3A SINE B2 2 198 0 1 1943 207 0 0 0 chr1 178080453 178080476 -19114956 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1 1943 1188 65 0 0 chr1 178081799 178081937 -19113495 + B1_Mus1 SINE Alu 1 138 -10 1 1943 226 0 0 56 chr1 178081937 178081973 -19113459 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1943 448 329 18 77 chr1 178082020 178082044 -19113388 + ID_B1 SINE B4 60 217 -7 1 1943 842 149 7 69 chr1 178082044 178082188 -19113244 + B1_Mm SINE Alu 6 140 -7 1 1943 261 0 0 0 chr1 178082224 178082253 -19113179 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1943 355 219 89 23 chr1 178082432 178082603 -19112829 + L1M2 LINE L1 5281 5466 -825 1 1943 665 294 0 7 chr1 178082612 178082759 -19112673 + RSINE1 SINE B4 4 149 -16 1 1943 334 267 72 66 chr1 178082839 178083035 -19112397 + L1M2 LINE L1 5460 5644 -536 1 1943 819 308 77 6 chr1 178083042 178083391 -19112041 - Tigger7 DNA MER2_type -7 2484 2111 1 1943 468 279 0 9 chr1 178083392 178083504 -19111928 - MER44B DNA MER2_type -440 110 1 1 1943 411 309 116 34 chr1 178083511 178083855 -19111577 + L1MB2 LINE L1 5653 6019 -1766 1 1943 3309 65 14 9 chr1 178083993 178084412 -19111020 + BGLII LTR ERVK 1 421 0 1 1943 569 200 39 6 chr1 178085416 178085572 -19109860 - Lx9 LINE L1 -7 7637 7477 1 1943 900 209 218 7 chr1 178085592 178085890 -19109542 + Lx9 LINE L1 7062 7422 -222 1 1943 874 327 143 26 chr1 178087054 178087515 -19107917 - MER74B LTR ERVL 0 622 108 1 1943 189 254 0 0 chr1 178087670 178087725 -19107707 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1 1943 10149 73 15 21 chr1 178087745 178089817 -19105615 + L1VL4 LINE L1 199 2261 -1298 1 1943 195 42 0 0 chr1 178089901 178089925 -19105507 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1943 1451 85 27 0 chr1 178089926 178090114 -19105318 - B2_Mm2 SINE B2 -1 194 2 1 1943 892 177 14 0 chr1 178090673 178090820 -19104612 - B1_Mur4 SINE Alu 0 150 2 1 1943 3997 0 5 0 chr1 178091585 178092003 -19103429 + L1Md_T LINE L1 6163 6582 0 1 1943 240 59 0 0 chr1 178092007 178092041 -19103391 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1943 273 369 83 26 chr1 178092041 178092233 -19103199 + B4A SINE B4 82 284 -8 1 1943 264 269 164 0 chr1 178092303 178092370 -19103062 - ID_B1 SINE B4 -61 163 86 1 1943 306 0 0 0 chr1 178092429 178092463 -19102969 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1943 183 80 0 0 chr1 178093709 178093734 -19101698 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 1 1943 328 229 67 59 chr1 178094030 178094149 -19101283 + B4A SINE B4 168 292 0 1 1943 431 319 32 27 chr1 178094323 178094510 -19100922 + B3A SINE B2 1 188 -10 1 1943 663 13 0 0 chr1 178094948 178095024 -19100408 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1943 1204 157 121 0 chr1 178096241 178096439 -19098993 + URR1A DNA MER1_type 5 226 0 1 1943 864 299 130 37 chr1 178098644 178099182 -19096250 + Lx8 LINE L1 6886 7473 0 1 1943 350 359 0 0 chr1 178101867 178101970 -19093462 + PB1D10 SINE Alu 2 104 -13 1 1943 1036 127 7 0 chr1 178102001 178102143 -19093289 + B1_Mus1 SINE Alu 1 143 -5 1 1943 455 209 0 9 chr1 178102151 178102267 -19093165 + GA-rich Low_complexity Low_complexity 1 115 0 1 1943 381 236 85 33 chr1 178102566 178102719 -19092713 - RLTR15 LTR ERVK -13 346 186 1 1943 329 250 79 56 chr1 178102825 178103003 -19092429 - RLTR15 LTR ERVK -177 182 1 1 1943 522 0 0 0 chr1 178103614 178103672 -19091760 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1943 381 22 0 0 chr1 178105615 178105661 -19089771 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1943 384 77 0 0 chr1 178106217 178106269 -19089163 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1943 22 35 0 0 chr1 178106347 178106376 -19089056 + AT_rich Low_complexity Low_complexity 1 29 0 2 1943 297 303 13 0 chr1 178106380 178106456 -19088976 - ID4 SINE ID -5 78 2 2 1943 267 152 0 0 chr1 178106612 178106658 -19088774 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1943 5677 44 0 0 chr1 178106740 178107378 -19088054 - L1Md_F2 LINE L1 -12 6570 5933 2 1943 508 35 0 0 chr1 178107379 178107437 -19087995 + L1Md_F2 LINE L1 5873 5930 -652 2 1943 225 0 0 0 chr1 178109446 178109471 -19085961 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2 1943 649 258 44 6 chr1 178109538 178109721 -19085711 - L1MD LINE L1 -624 5618 5429 2 1943 1431 155 0 14 chr1 178109767 178109977 -19085455 - B3 SINE B2 -8 208 2 2 1943 2483 120 3 0 chr1 178110830 178111156 -19084276 - ORR1A2 LTR MaLR 0 327 1 2 1943 581 213 57 0 chr1 178111898 178112020 -19083412 - B1_Mur2 SINE Alu -7 142 14 2 1943 252 261 100 80 chr1 178112020 178112048 -19083384 - ID_B1 SINE B4 -7 217 65 2 1943 273 353 75 25 chr1 178112519 178112679 -19082753 - L2 LINE L2 -743 2676 2509 2 1943 790 214 38 38 chr1 178112850 178113035 -19082397 + B3A SINE B2 1 185 -13 2 1943 282 217 217 0 chr1 178115077 178115160 -19080272 + PB1D9 SINE Alu 1 101 -19 2 1943 2707 169 71 50 chr1 178115726 178116244 -19079188 + RLTR24 LTR ERV1 1 529 0 2 1943 554 243 6 0 chr1 178116837 178117014 -19078418 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1943 464 342 52 13 chr1 178117793 178117947 -19077485 + RSINE1 SINE B4 6 165 0 2 1943 443 33 16 0 chr1 178117980 178118041 -19077391 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 2 1943 188 125 0 48 chr1 178118604 178118646 -19076786 + CT-rich Low_complexity Low_complexity 4 43 0 2 1943 188 233 19 28 chr1 178118667 178118773 -19076659 + CT-rich Low_complexity Low_complexity 4 108 0 2 1943 224 30 30 0 chr1 178118946 178118979 -19076453 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 2 1943 439 324 7 21 chr1 178118979 178119121 -19076311 + MLT1J1 LTR MaLR 36 175 -269 2 1943 306 106 0 0 chr1 178119547 178119594 -19075838 + (TCTCCC)n Simple_repeat Simple_repeat 4 50 0 2 1943 303 306 55 18 chr1 178119611 178119721 -19075711 - B4 SINE B4 -160 132 19 2 1943 318 252 152 14 chr1 178119780 178119925 -19075507 + Lx5 LINE L1 6885 7049 -1 2 1943 180 97 0 0 chr1 178119966 178119997 -19075435 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1943 1088 241 0 24 chr1 178122668 178122880 -19072552 - B3 SINE B2 -8 208 2 2 1943 343 318 23 38 chr1 178122884 178123021 -19072411 - MLT1A0 LTR MaLR -70 320 180 2 1943 319 298 69 12 chr1 178123618 178123778 -19071654 - L1MB3 LINE L1 -7 6176 6008 2 1943 27 49 0 0 chr1 178123881 178123922 -19071510 + AT_rich Low_complexity Low_complexity 1 41 0 2 1943 907 185 20 0 chr1 178124236 178124382 -19071050 - B1_Mur2 SINE Alu 0 149 1 2 1943 303 303 13 0 chr1 178124603 178124679 -19070753 + ID4 SINE ID 3 79 -4 2 1943 658 307 57 0 chr1 178126098 178126290 -19069142 - ID_B1 SINE B4 -19 205 3 2 1943 288 0 0 0 chr1 178126290 178126322 -19069110 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1943 466 261 0 0 chr1 178126324 178126416 -19069016 - PB1D10 SINE Alu -23 94 3 2 1943 429 284 0 64 chr1 178126416 178126431 -19069001 - ID_B1 SINE B4 -47 175 76 2 242 609 311 7 7 chr1 178126804 178126953 -19068479 - RSINE1 SINE B4 -14 151 3 2 1944 22 56 0 0 chr1 178127471 178127507 -19067925 + AT_rich Low_complexity Low_complexity 1 36 0 2 1944 414 0 0 0 chr1 178127525 178127571 -19067861 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1944 259 364 99 20 chr1 178128645 178128937 -19066495 - L2 LINE L2 -349 3070 2756 2 1944 680 232 7 14 chr1 178129660 178129800 -19065632 + ID_B1 SINE B4 82 220 -4 2 1944 225 196 0 61 chr1 178130020 178130069 -19065363 + B4 SINE B4 168 213 -79 2 1944 477 50 0 0 chr1 178130070 178130130 -19065302 + (TAAAA)n Simple_repeat Simple_repeat 3 62 0 2 1944 441 183 0 12 chr1 178130340 178130423 -19065009 + ORR1C2-int LTR MaLR 1284 1365 -5 2 1944 1507 222 80 17 chr1 178130435 178130796 -19064636 + ORR1C2 LTR MaLR 1 384 0 2 1944 948 288 18 86 chr1 178130820 178131158 -19064274 + MTE2a LTR MaLR 58 372 -7 2 1944 181 257 68 54 chr1 178131265 178131339 -19064093 - L3 LINE CR1 -502 3987 3913 2 1944 687 108 0 0 chr1 178131342 178131444 -19063988 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1944 415 358 123 46 chr1 178131472 178131940 -19063492 - MER21B LTR ERV1 -154 709 206 2 1944 346 240 40 13 chr1 178132089 178132165 -19063267 - MER21B LTR ERV1 -773 90 13 2 1944 210 158 0 0 chr1 178132166 178132204 -19063228 + T-rich Low_complexity Low_complexity 5 42 0 2 1944 321 297 66 0 chr1 178132592 178132705 -19062727 - MIR SINE MIR -130 138 18 2 1944 1384 254 43 6 chr1 178132714 178133066 -19062366 + ORR1D2 LTR MaLR 1 365 -5 2 1944 22 0 0 0 chr1 178134278 178134300 -19061132 + AT_rich Low_complexity Low_complexity 1 22 0 2 1944 35 0 0 0 chr1 178137120 178137155 -19058277 + AT_rich Low_complexity Low_complexity 1 35 0 2 1944 384 22 0 0 chr1 178137526 178137571 -19057861 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1944 337 286 142 54 chr1 178137758 178137906 -19057526 - B3A SINE B2 -18 180 20 2 1944 360 0 0 0 chr1 178137924 178137964 -19057468 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1944 317 327 35 0 chr1 178138119 178138232 -19057200 + PB1D10 SINE Alu 1 117 0 2 1944 407 328 8 0 chr1 178140111 178140245 -19055187 + MLT1A0 LTR MaLR 231 365 0 2 1944 294 29 0 0 chr1 178140786 178140821 -19054611 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 2 1944 203 0 37 0 chr1 178140824 178140851 -19054581 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1944 648 273 16 78 chr1 178141110 178141301 -19054131 + B4A SINE B4 114 292 0 2 1944 387 98 0 0 chr1 178141321 178141382 -19054050 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1944 180 0 0 0 chr1 178141820 178141840 -19053592 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1944 623 277 146 63 chr1 178144785 178145039 -19050393 + B4A SINE B4 5 279 -13 2 1944 563 210 149 112 chr1 178146786 178147027 -19048405 + MLT1A0 LTR MaLR 54 303 -62 2 1944 569 172 14 20 chr1 178147846 178147880 -19047552 + polypurine Low_complexity Low_complexity 2 35 0 2 1944 1134 120 0 0 chr1 178147880 178148055 -19047377 + (GGAGA)n Simple_repeat Simple_repeat 4 178 0 2 1944 569 172 14 20 chr1 178148055 178148168 -19047264 + GA-rich Low_complexity Low_complexity 36 148 0 2 1944 620 304 0 0 chr1 178148689 178148827 -19046605 + ID_B1 SINE B4 87 224 0 2 1944 405 0 0 0 chr1 178149336 178149381 -19046051 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1944 337 355 10 71 chr1 178149743 178149940 -19045492 + MER115 DNA Tip100 446 630 -63 2 1944 320 352 32 43 chr1 178150104 178150291 -19045141 - MER3 DNA MER1_type -18 191 7 2 1944 258 171 0 0 chr1 178150544 178150585 -19044847 + RSINE1 SINE B4 89 129 -36 2 1944 279 0 0 0 chr1 178150590 178150621 -19044811 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1944 366 284 30 18 chr1 178150652 178150817 -19044615 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 1944 798 178 0 56 chr1 178151023 178151166 -19044266 + B1_Mus1 SINE Alu 1 135 -13 2 1944 262 45 45 0 chr1 178151166 178151210 -19044222 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 2 1944 270 0 0 0 chr1 178151263 178151293 -19044139 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1944 180 348 192 0 chr1 178151323 178151409 -19044023 + L2a LINE L2 2602 2706 -713 2 1944 1176 95 0 0 chr1 178151409 178151577 -19043855 + (TTCCC)n Simple_repeat Simple_repeat 3 170 0 2 1944 180 348 192 0 chr1 178151577 178151651 -19043781 + L2a LINE L2 2707 2792 -627 2 1944 268 360 5 64 chr1 178151879 178152066 -19043366 + L2a LINE L2 3057 3232 -194 2 1944 557 14 14 0 chr1 178152535 178152605 -19042827 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1944 659 293 59 65 chr1 178152607 178152961 -19042471 + L1MA7 LINE L1 5822 6173 -118 2 1944 368 286 17 87 chr1 178152984 178153099 -19042333 - PB1 SINE Alu -3 124 18 2 1944 26 30 0 0 chr1 178153222 178153255 -19042177 + AT_rich Low_complexity Low_complexity 1 33 0 2 1944 27 0 0 0 chr1 178154332 178154359 -19041073 + AT_rich Low_complexity Low_complexity 1 27 0 2 1944 417 295 54 16 chr1 178154927 178155111 -19040321 - Tigger7 DNA MER2_type -142 197 7 2 1944 433 301 14 50 chr1 178155327 178155467 -19039965 - RMER30 DNA MER1_type -34 168 34 2 1944 789 168 136 12 chr1 178155552 178155628 -19039804 - RLTR20C LTR ERVK -4 530 434 2 1944 432 0 0 0 chr1 178155628 178155676 -19039756 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1944 789 168 136 12 chr1 178155676 178155768 -19039664 - RLTR20C LTR ERVK -101 433 342 2 1944 4043 195 52 7 chr1 178155781 178156619 -19038813 + MYSERV16_I-int LTR ERVK 66 941 -1385 2 1944 562 81 0 34 chr1 178156609 178156698 -19038734 + MYSERV16_I-int LTR ERVK 1062 1147 -1179 2 1944 807 130 0 0 chr1 178156756 178157005 -19038427 + (GA)n Simple_repeat Simple_repeat 1 249 0 2 1944 242 184 122 0 chr1 178160497 178160546 -19034886 - ID_B1 SINE B4 -16 208 154 2 1944 663 199 29 0 chr1 178160610 178160781 -19034651 + GA-rich Low_complexity Low_complexity 2 177 0 2 1944 327 306 9 53 chr1 178160878 178161054 -19034378 + MLT1B LTR MaLR 257 442 -25 2 1944 1346 209 171 6 chr1 178161661 178162012 -19033420 + MTD LTR MaLR 11 419 0 2 1944 446 309 108 81 chr1 178163462 178164055 -19031377 + L1MD LINE L1 4466 5098 -1048 2 1944 436 264 0 45 chr1 178164055 178164166 -19031266 - PB1D10 SINE Alu -7 110 5 2 1944 446 309 108 81 chr1 178164166 178164351 -19031081 + L1MD LINE L1 5099 5265 -881 2 1944 440 249 113 109 chr1 178164428 178164885 -19030547 + L1MC2 LINE L1 5380 5823 -468 2 1944 405 0 0 0 chr1 178165112 178165157 -19030275 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1944 412 200 85 9 chr1 178165178 178165284 -19030148 + L1MC2 LINE L1 5796 5909 -1876 2 1944 637 244 16 134 chr1 178165287 178165533 -19029899 + RMER19A LTR ERVK 1 217 -520 2 1944 6089 63 2 22 chr1 178165533 178166360 -19029072 + MusHAL1 LINE L1 1901 2711 -1 2 1944 2028 221 71 67 chr1 178166360 178167029 -19028403 + RMER19B LTR ERVK 90 756 -146 2 1944 1361 114 5 15 chr1 178167029 178167225 -19028207 - B2_Mm2 SINE B2 0 195 2 3 1944 962 278 124 122 chr1 178167225 178167366 -19028066 + RMER19B LTR ERVK 757 902 0 2 1944 797 275 140 53 chr1 178167373 178167715 -19027717 + L1MC2 LINE L1 5914 6285 -59 2 1944 549 276 63 27 chr1 178167787 178168010 -19027422 - B4A SINE B4 -16 276 46 3 1944 223 219 36 24 chr1 178168260 178168344 -19027088 + (TTTG)n Simple_repeat Simple_repeat 3 87 0 3 1944 894 173 15 0 chr1 178168408 178168541 -19026891 - B1_Mur4 SINE Alu -15 135 1 3 1944 1137 303 23 63 chr1 178168922 178169168 -19026264 - Lx8 LINE L1 -440 7033 6805 3 1944 393 75 0 0 chr1 178169168 178169221 -19026211 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1944 1137 303 23 63 chr1 178169221 178169404 -19026028 - Lx8 LINE L1 -669 6804 6621 3 1944 264 242 91 40 chr1 178169406 178169505 -19025927 - MER5A1 DNA MER1_type -62 104 1 3 1944 385 252 107 40 chr1 178169837 178169986 -19025446 - B4A SINE B4 -122 170 12 3 1944 272 307 37 56 chr1 178169996 178170103 -19025329 - PB1D10 SINE Alu -11 106 2 3 1944 230 56 28 0 chr1 178170225 178170261 -19025171 + (ATTG)n Simple_repeat Simple_repeat 1 37 0 3 1944 192 40 0 0 chr1 178170307 178170332 -19025100 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1944 655 200 22 22 chr1 178170361 178170499 -19024933 + B1_Mur4 SINE Alu 12 149 -1 3 1944 31 82 0 0 chr1 178170683 178170756 -19024676 + AT_rich Low_complexity Low_complexity 1 73 0 3 1944 331 280 92 8 chr1 178171500 178171619 -19023813 - MLT1A LTR MaLR 0 374 246 3 1944 368 338 35 82 chr1 178171714 178172081 -19023351 + ORR1D2 LTR MaLR 21 370 0 3 1944 1359 73 17 0 chr1 178172118 178172295 -19023137 - L1Md_F2 LINE L1 -620 5962 5783 3 1944 8666 35 1 0 chr1 178172290 178173535 -19021897 - L1Md_F2 LINE L1 -1 6581 5336 3 1944 5315 49 2 5 chr1 178173535 178174155 -19021277 + L1Md_F2 LINE L1 5965 6582 0 3 1944 216 0 0 0 chr1 178174821 178174845 -19020587 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1944 362 115 16 0 chr1 178174849 178174910 -19020522 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 3 1944 602 320 58 19 chr1 178175621 178175828 -19019604 + Tigger5 DNA MER2_type 1 215 -2191 3 1944 279 0 0 0 chr1 178175922 178175953 -19019479 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1944 7525 75 17 1 chr1 178175978 178177594 -19017838 - L1Md_F2 LINE L1 0 6582 4941 3 1944 192 77 0 0 chr1 178178302 178178328 -19017104 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 3 1944 540 111 0 0 chr1 178179590 178179671 -19015761 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1944 254 219 139 47 chr1 178179795 178179881 -19015551 + MLT1J1 LTR MaLR 52 145 -299 3 1944 1819 196 59 111 chr1 178180326 178180768 -19014664 + MTD LTR MaLR 1 419 0 3 1944 21 0 0 0 chr1 178180928 178180949 -19014483 + AT_rich Low_complexity Low_complexity 1 21 0 3 1944 240 59 0 0 chr1 178181070 178181104 -19014328 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1944 295 253 26 13 chr1 178181348 178181424 -19014008 - ID4_ SINE ID -6 77 1 3 1944 25 0 0 0 chr1 178181569 178181594 -19013838 + AT_rich Low_complexity Low_complexity 1 25 0 3 1944 1282 61 0 0 chr1 178182266 178182413 -19013019 + B1_Mus2 SINE Alu 1 147 0 3 1944 348 266 44 44 chr1 178183002 178183116 -19012316 - PB1D7 SINE Alu -2 118 5 3 1944 237 329 146 0 chr1 178183596 178183760 -19011672 - MER2 DNA MER2_type -25 320 133 3 1944 908 171 112 5 chr1 178183761 178183949 -19011483 + URR1A DNA MER1_type 1 208 -18 3 1944 377 271 128 24 chr1 178183948 178184073 -19011359 - MER2 DNA MER2_type -206 139 2 3 1944 233 324 45 109 chr1 178184150 178184306 -19011126 - MER113 DNA MER1_type -286 235 90 3 1944 22 35 0 0 chr1 178184762 178184791 -19010641 + AT_rich Low_complexity Low_complexity 1 29 0 3 1944 232 258 108 49 chr1 178185688 178185790 -19009642 + MLT1L LTR MaLR 130 237 -373 3 1944 481 323 90 90 chr1 178186025 178186379 -19009053 + MTE2a LTR MaLR 6 359 -20 3 1944 230 225 0 0 chr1 178187489 178187529 -19007903 + (CGTG)n Simple_repeat Simple_repeat 2 41 0 3 1944 831 135 0 0 chr1 178187887 178188118 -19007314 + (GGAGAA)n Simple_repeat Simple_repeat 1 231 0 3 1944 279 322 23 0 chr1 178188603 178188690 -19006742 + ID_B1 SINE B4 81 169 -55 3 1944 431 280 0 0 chr1 178188612 178188712 -19006720 + PB1D10 SINE Alu 11 110 -7 3 1944 273 325 0 12 chr1 178190605 178190686 -19004746 + ID4_ SINE ID 2 81 -2 3 1944 405 70 0 0 chr1 178190784 178190841 -19004591 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1944 305 337 11 29 chr1 178191508 178191682 -19003750 + L1MD3 LINE L1 6815 6985 -1010 3 1944 709 270 31 8 chr1 178191703 178191898 -19003534 + B3A SINE B2 1 200 -16 3 1944 1094 251 51 129 chr1 178192285 178192696 -19002736 + MTEa LTR MaLR 1 379 0 3 1944 588 253 92 92 chr1 178193203 178193603 -19001829 + MT2A LTR ERVL 134 533 0 3 1944 467 293 216 8 chr1 178193614 178193850 -19001582 - MTD LTR MaLR -134 285 1 3 1944 245 257 184 22 chr1 178194052 178194231 -19001201 - L1ME3A LINE L1 -93 6080 5873 3 1944 725 266 91 25 chr1 178194538 178194994 -19000438 - L1ME3A LINE L1 -635 5527 5022 3 1944 283 271 111 56 chr1 178195081 178195149 -19000283 - L1MC LINE L1 -1312 4834 4767 3 1944 1455 230 69 9 chr1 178195149 178195496 -18999936 - ORR1D2 LTR MaLR -2 368 1 3 1944 283 271 111 56 chr1 178195496 178195661 -18999771 - L1MC LINE L1 -1380 4766 4588 3 1944 248 296 135 38 chr1 178195687 178195954 -18999478 - L1ME3A LINE L1 -1712 4434 4142 3 1944 599 271 86 56 chr1 178195978 178196338 -18999094 - L1M5 LINE L1 -1870 4276 3906 3 1944 500 306 63 76 chr1 178196347 178196662 -18998770 - MTD LTR MaLR -108 311 1 3 1944 312 271 39 39 chr1 178196664 178196791 -18998641 - L1M5 LINE L1 -2240 3906 3780 3 1944 279 291 117 9 chr1 178197454 178197565 -18997867 + B1F1 SINE Alu 5 127 -22 3 1944 274 250 0 27 chr1 178197580 178197654 -18997778 + GA-rich Low_complexity Low_complexity 1 72 0 3 1944 933 326 52 4 chr1 178198896 178199164 -18996268 - B4A SINE B4 -9 283 3 3 1944 4833 95 10 140 chr1 178199299 178200229 -18995203 - RMER17D2 LTR ERVK 0 809 1 3 1944 188 35 35 0 chr1 178200966 178200995 -18994437 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1944 24 53 0 0 chr1 178201173 178201211 -18994221 + AT_rich Low_complexity Low_complexity 1 38 0 3 1944 1162 108 133 5 chr1 178201472 178201667 -18993765 + URR1A DNA MER1_type 1 220 -6 3 1944 362 240 75 28 chr1 178201874 178201981 -18993451 - PB1D7 SINE Alu -8 112 1 3 1944 207 326 0 32 chr1 178205200 178205295 -18990137 + G-rich Low_complexity Low_complexity 3 94 0 3 1944 267 267 13 13 chr1 178206732 178206808 -18988624 - MIRb SINE MIR -77 191 116 3 1944 612 244 66 7 chr1 178208024 178208160 -18987272 + RSINE1 SINE B4 1 144 -21 3 1944 269 334 66 89 chr1 178208310 178208691 -18986741 - ORR1D1 LTR MaLR 0 374 3 3 1944 182 315 74 32 chr1 178209346 178209441 -18985991 - MIRb SINE MIR -130 138 40 3 1944 934 252 71 39 chr1 178209512 178209793 -18985639 - B4A SINE B4 0 292 3 3 1944 4012 30 5 0 chr1 178210111 178210545 -18984887 + RLTR10C LTR ERVK 1 436 0 3 1944 21 0 0 0 chr1 178210641 178210662 -18984770 + AT_rich Low_complexity Low_complexity 1 21 0 3 1944 245 314 22 34 chr1 178210770 178210859 -18984573 - MIRb SINE MIR -34 234 147 3 1944 226 256 86 99 chr1 178211172 178211324 -18984108 - MLT1A0 LTR MaLR -215 150 1 3 1944 39504 5 0 1 chr1 178212234 178218022 -18977410 + L1Md_A LINE L1 1 5586 -297 3 1944 9635 2 0 0 chr1 178218022 178219018 -18976414 + L1Md_A LINE L1 5587 6582 0 3 1944 22 35 0 0 chr1 178219038 178219067 -18976365 + AT_rich Low_complexity Low_complexity 1 29 0 3 1944 515 248 26 0 chr1 178219951 178220064 -18975368 - PB1D10 SINE Alu -1 116 1 3 1944 195 100 0 0 chr1 178220199 178220229 -18975203 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1944 312 245 18 35 chr1 178221459 178221573 -18973859 - RLTR15 LTR ERVK -13 346 235 3 1944 269 282 139 63 chr1 178222197 178222418 -18973014 - MIRb SINE MIR -21 247 6 3 1944 228 229 92 17 chr1 178222535 178222655 -18972777 - Lx8 LINE L1 -6 7467 7339 3 1944 2160 246 196 34 chr1 178222689 178223425 -18972007 - Lx7 LINE L1 -336 7360 6506 3 1944 609 14 0 0 chr1 178224836 178224906 -18970526 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1944 244 264 22 22 chr1 178225124 178225213 -18970219 + GA-rich Low_complexity Low_complexity 4 92 0 3 1944 905 249 95 23 chr1 178225257 178225520 -18969912 + B4A SINE B4 1 282 -10 3 1944 279 0 0 0 chr1 178225536 178225567 -18969865 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1944 570 216 60 9 chr1 178226328 178226470 -18968962 - MTD LTR MaLR -14 405 268 3 1944 930 298 23 45 chr1 178226481 178226801 -18968631 - MTD LTR MaLR -83 313 1 3 1944 567 246 139 0 chr1 178227854 178227976 -18967456 + B1F SINE Alu 3 141 -8 3 1944 191 167 0 23 chr1 178227986 178228029 -18967403 + GA-rich Low_complexity Low_complexity 3 44 0 3 1944 630 26 0 0 chr1 178228347 178228423 -18967009 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1944 578 271 59 97 chr1 178228434 178228724 -18966708 - B4A SINE B4 -10 282 4 3 1944 1131 67 0 0 chr1 178228758 178228892 -18966540 + B1_Mus1 SINE Alu 2 135 -13 3 1944 440 18 18 0 chr1 178229769 178229826 -18965606 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1944 243 0 0 0 chr1 178229834 178229861 -18965571 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1944 511 275 17 75 chr1 178229867 178230040 -18965392 - RSINE1 SINE B4 0 165 3 3 1944 270 336 58 44 chr1 178230635 178230772 -18964660 + MER63B DNA AcHobo 283 421 -15 3 1944 477 0 0 0 chr1 178230781 178230834 -18964598 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1944 219 330 0 96 chr1 178230916 178231020 -18964412 + ID_B1 SINE B4 24 117 -107 3 1944 370 258 158 6 chr1 178232134 178232317 -18963115 + RCHARR1 DNA MER1_type 608 818 -156 3 1944 327 271 135 0 chr1 178232415 178232548 -18962884 + RCHARR1 DNA MER1_type 824 974 0 3 1944 1255 56 0 0 chr1 178232649 178232793 -18962639 - B1_Mus1 SINE Alu -4 144 1 3 1944 269 169 119 0 chr1 178233288 178233347 -18962085 + B4 SINE B4 209 274 -18 3 1944 234 0 0 0 chr1 178233410 178233436 -18961996 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1944 1191 294 39 75 chr1 178234543 178235050 -18960382 + RMER5 LTR ERV1 46 534 0 4 1944 1484 76 16 0 chr1 178236265 178236449 -18958983 - B2_Mm2 SINE B2 -7 188 2 4 1944 432 0 0 0 chr1 178236929 178236977 -18958455 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1944 704 159 10 154 chr1 178236979 178237145 -18958287 - B2_Mm2 SINE B2 -23 172 33 4 1944 1259 55 7 0 chr1 178237145 178237290 -18958142 - B1_Mus1 SINE Alu -1 147 2 4 1944 704 159 10 154 chr1 178237290 178237324 -18958108 - B2_Mm2 SINE B2 -163 32 1 4 1944 826 284 45 62 chr1 178237475 178237683 -18957749 + ID_B1 SINE B4 3 202 -22 4 1944 216 295 0 16 chr1 178239020 178239082 -18956350 + GA-rich Low_complexity Low_complexity 4 64 0 4 1944 207 0 0 0 chr1 178239648 178239671 -18955761 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1944 319 244 49 0 chr1 178240358 178240440 -18954992 + ID SINE ID 2 87 -137 4 1944 930 266 43 22 chr1 178240598 178240875 -18954557 + RMER15 LTR ERVL 279 561 -14 4 1944 222 365 37 83 chr1 178240941 178241183 -18954249 - L2 LINE L2 -662 2757 2527 4 1944 239 0 0 31 chr1 178241847 178241879 -18953553 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1944 1054 69 69 0 chr1 178241879 178242010 -18953422 - B1_Mus2 SINE Alu -7 140 1 4 1944 741 376 65 49 chr1 178242020 178243014 -18952418 - L2a LINE L2 -21 3405 2401 4 1944 216 189 78 0 chr1 178243028 178243094 -18952338 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1944 237 65 0 0 chr1 178243094 178243125 -18952307 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1944 216 189 78 0 chr1 178243125 178243148 -18952284 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1944 393 22 0 0 chr1 178243314 178243360 -18952072 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1944 698 88 0 52 chr1 178243361 178243516 -18951916 + (CAGAGA)n Simple_repeat Simple_repeat 2 148 0 4 1944 479 312 55 55 chr1 178243517 178243771 -18951661 - L2a LINE L2 -1235 2184 1931 4 1944 829 238 73 0 chr1 178244065 178244271 -18951161 - MTD-int LTR MaLR -720 538 318 4 1944 360 0 0 0 chr1 178244349 178244389 -18951043 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1944 774 288 5 9 chr1 178244405 178244619 -18950813 - Lx9 LINE L1 -354 7290 7078 4 1944 359 109 125 0 chr1 178244706 178244770 -18950662 + L1_Rod LINE L1 5690 5761 -86 4 1944 2610 277 41 11 chr1 178245109 178245773 -18949659 + Lx9 LINE L1 6367 7050 -594 4 1944 730 275 38 69 chr1 178245806 178246068 -18949364 - MTD-int LTR MaLR -1004 254 1 4 1944 1911 218 50 8 chr1 178246068 178246470 -18948962 - MTD LTR MaLR 0 419 1 4 1944 716 107 9 0 chr1 178246524 178246636 -18948796 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 4 1944 2180 186 66 8 chr1 178246697 178247093 -18948339 + MTC LTR MaLR 3 421 0 4 1944 339 44 0 0 chr1 178247185 178247230 -18948202 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1944 307 284 113 44 chr1 178247468 178247798 -18947634 + L1MDa LINE L1 2476 2836 -3701 4 1944 351 0 0 0 chr1 178248202 178248241 -18947191 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1944 374 225 92 68 chr1 178248444 178248633 -18946799 - MTEa LTR MaLR -2 377 201 4 1944 393 75 0 0 chr1 178248635 178248688 -18946744 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1944 898 241 38 28 chr1 178248688 178248901 -18946531 - MTEa LTR MaLR -163 216 2 4 1944 519 274 153 62 chr1 178248905 178249454 -18945978 + L1MDa LINE L1 3000 3603 -2934 4 1944 363 44 0 0 chr1 178249454 178249499 -18945933 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 4 1944 519 274 153 62 chr1 178249499 178249563 -18945869 + L1MDa LINE L1 3604 3669 -2868 4 1944 578 314 79 11 chr1 178249583 178249850 -18945582 + B4A SINE B4 2 286 -6 4 1944 231 307 64 64 chr1 178250032 178250126 -18945306 - RMER13A LTR ERVK -214 694 601 4 1944 892 291 52 76 chr1 178250173 178250631 -18944801 - RMER13A LTR ERVK -399 461 15 4 1944 437 225 0 0 chr1 178250735 178250815 -18944617 - PB1D10 SINE Alu -20 97 18 4 1944 252 0 0 0 chr1 178250898 178250926 -18944506 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1944 323 257 19 9 chr1 178251650 178251756 -18943676 + L1MDa LINE L1 5464 5570 -967 4 1944 613 276 22 0 chr1 178251767 178251901 -18943531 + ID_B1 SINE B4 88 224 0 4 1944 272 209 15 15 chr1 178251957 178252025 -18943407 + L1MDa LINE L1 5595 5662 -875 4 1944 194 179 18 0 chr1 178252028 178252084 -18943348 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 4 1944 427 278 70 32 chr1 178252115 178252271 -18943161 + MLT1E1A LTR MaLR 25 186 -494 4 1944 40 37 0 0 chr1 178252316 178252370 -18943062 + AT_rich Low_complexity Low_complexity 1 54 0 4 1944 355 342 39 14 chr1 178252403 178252628 -18942804 + L1ME3 LINE L1 5856 6097 -347 4 1944 400 348 48 4 chr1 178252747 178253015 -18942417 - L2 LINE L2 -1568 1851 1572 4 1944 1194 232 117 9 chr1 178253350 178253667 -18941765 - MTE2b LTR MaLR -11 368 18 4 1944 360 0 0 0 chr1 178254183 178254223 -18941209 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1944 345 316 81 17 chr1 178254897 178255071 -18940361 - MER58A DNA MER1_type -3 221 37 4 1944 1331 188 152 28 chr1 178255604 178256105 -18939327 - RLTR20B1 LTR ERVK 0 563 1 4 1944 905 302 35 78 chr1 178256789 178257213 -18938219 - MTD LTR MaLR -13 406 1 4 1945 197 330 81 57 chr1 178257996 178258243 -18937189 - L4 LINE RTE -1737 292 40 4 1945 252 0 0 0 chr1 178258425 178258453 -18936979 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1945 643 301 111 19 chr1 178258512 178258572 -18936860 - B4A SINE B4 -6 286 217 4 1945 537 92 31 0 chr1 178258572 178258670 -18936762 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 4 1945 643 301 111 19 chr1 178258670 178258870 -18936562 - B4A SINE B4 -76 216 3 4 1945 405 255 64 0 chr1 178259600 178259694 -18935738 - PB1D10 SINE Alu -8 109 10 4 1945 374 0 22 0 chr1 178259704 178259750 -18935682 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1945 669 297 109 0 chr1 178259777 178259979 -18935453 - B4A SINE B4 -68 224 1 4 1945 512 316 69 20 chr1 178260944 178261147 -18934285 + B4 SINE B4 16 228 -64 4 1945 920 189 0 20 chr1 178261171 178261322 -18934110 + B1_Mur4 SINE Alu 2 149 -1 4 1945 686 278 58 0 chr1 178261619 178261792 -18933640 - B3A SINE B2 -15 183 1 4 1945 314 303 37 15 chr1 178262181 178262315 -18933117 + L1M2 LINE L1 1632 1768 -5081 4 1945 237 370 35 21 chr1 178263066 178263207 -18932225 - L1MEf LINE L1 -4507 1693 1551 4 1945 570 290 21 14 chr1 178263230 178263370 -18932062 + B1F1 SINE Alu 1 141 -8 4 1945 269 301 157 8 chr1 178263508 178263642 -18931790 - L1MC2 LINE L1 -115 6229 6076 4 1945 966 41 0 0 chr1 178263646 178263767 -18931665 + B1_Mus2 SINE Alu 27 147 0 4 1945 406 242 93 41 chr1 178263767 178263939 -18931493 - L1MC2 LINE L1 -260 6084 5904 4 1945 388 307 112 11 chr1 178264137 178264315 -18931117 + MLT2B1 LTR ERVL 371 566 -1 4 1945 803 108 62 0 chr1 178264315 178264444 -18930988 - MYSERV16_I-int LTR ERVK -890 1436 1300 4 1945 738 150 39 7 chr1 178264443 178264597 -18930835 - MYSERV16_I-int LTR ERVK -1141 1185 1027 4 1945 467 226 81 88 chr1 178264601 178264761 -18930671 - MYSERV16_I-int LTR ERVK -1442 884 726 4 1945 289 320 0 0 chr1 178264896 178264971 -18930461 - ID4 SINE ID -4 79 5 4 1945 199 281 0 17 chr1 178265593 178265651 -18929781 - MIRc SINE MIR -22 246 190 4 1945 540 285 58 50 chr1 178266359 178266599 -18928833 + RLTR42-int LTR ERVK 1157 1398 -4124 4 1945 566 71 12 0 chr1 178266745 178266829 -18928603 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 4 1945 29 0 0 0 chr1 178267339 178267368 -18928064 + AT_rich Low_complexity Low_complexity 1 29 0 4 1945 530 269 19 70 chr1 178268253 178268409 -18927023 + RSINE1 SINE B4 18 165 0 4 1945 1053 254 57 83 chr1 178268713 178269013 -18926419 + B4 SINE B4 1 292 0 4 1945 432 214 11 6 chr1 178269013 178269192 -18926240 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1945 630 257 66 16 chr1 178270732 178270914 -18924518 - ORR1E LTR MaLR -6 353 163 4 1945 503 107 12 0 chr1 178270921 178271005 -18924427 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 4 1945 811 239 39 6 chr1 178271005 178271186 -18924246 - ORR1E LTR MaLR -168 191 5 4 1945 459 0 0 0 chr1 178271299 178271350 -18924082 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1945 825 292 105 29 chr1 178271611 178271925 -18923507 - MLT1A0 LTR MaLR -16 349 12 4 1945 1011 275 120 44 chr1 178272229 178272571 -18922861 + MTEa LTR MaLR 6 373 -6 4 1945 1691 173 63 52 chr1 178272963 178273328 -18922104 + ORR1D1 LTR MaLR 1 369 -5 4 1945 1896 81 8 4 chr1 178275519 178275779 -18919653 - MTA_Mm LTR MaLR -135 261 1 4 1945 8279 73 11 70 chr1 178275779 178276945 -18918487 - MTA_Mm-int LTR MaLR 0 1098 1 4 1945 3223 71 5 5 chr1 178276945 178277341 -18918091 - MTA_Mm LTR MaLR 0 396 1 4 1945 240 288 14 107 chr1 178277353 178277493 -18917939 - L1ME3A LINE L1 -207 5966 5840 4 1945 333 272 61 6 chr1 178277503 178277666 -18917766 - L1ME3A LINE L1 -738 5435 5264 4 1945 378 143 0 0 chr1 178277880 178277943 -18917489 + (T)n Simple_repeat Simple_repeat 1 63 0 4 1945 198 0 0 0 chr1 178278038 178278060 -18917372 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1945 210 37 0 0 chr1 178278254 178278281 -18917151 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1945 457 216 62 0 chr1 178278293 178278390 -18917042 - RSINE1 SINE B4 -52 113 11 4 1945 513 355 142 5 chr1 178278691 178279085 -18916347 - L1ME3A LINE L1 -1150 4996 4549 4 1945 214 106 21 21 chr1 178279654 178279702 -18915730 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1945 396 0 0 0 chr1 178279703 178279747 -18915685 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1945 327 311 75 0 chr1 178281132 178281238 -18914194 + MIR SINE MIR 37 150 -112 4 1945 240 333 91 23 chr1 178281519 178281694 -18913738 + YREP_Mm Unknown Unknown 108 294 -1518 4 1945 742 356 5 5 chr1 178281579 178281788 -18913644 - ID_B1 SINE B4 -7 217 9 4 1945 324 211 0 0 chr1 178282527 178282598 -18912834 + (TATG)n Simple_repeat Simple_repeat 2 72 0 4 1945 23 68 0 0 chr1 178282615 178282659 -18912773 + AT_rich Low_complexity Low_complexity 1 44 0 4 1945 322 353 86 16 chr1 178283619 178283806 -18911626 - MIRb SINE MIR -46 222 23 4 1945 326 283 20 10 chr1 178283860 178283960 -18911472 + CT-rich Low_complexity Low_complexity 1 101 0 4 1945 319 247 10 31 chr1 178284584 178284680 -18910752 + GA-rich Low_complexity Low_complexity 4 97 0 4 1945 270 81 0 0 chr1 178284870 178284907 -18910525 + (TCC)n Simple_repeat Simple_repeat 1 37 0 4 1945 237 262 0 0 chr1 178284907 178284968 -18910464 + (CCA)n Simple_repeat Simple_repeat 1 61 0 4 1945 585 28 0 0 chr1 178286454 178286525 -18908907 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1945 456 19 0 0 chr1 178286880 178286933 -18908499 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1945 329 319 70 74 chr1 178287536 178287766 -18907666 - MLT1M LTR MaLR -218 454 226 4 1945 238 265 77 28 chr1 178287950 178288058 -18907374 - MIR SINE MIR -48 220 111 4 1945 22 0 0 0 chr1 178289210 178289232 -18906200 + AT_rich Low_complexity Low_complexity 1 22 0 5 1945 334 276 70 94 chr1 178291648 178291659 -18903773 - ID_B1 SINE B4 0 224 150 5 1945 290 354 22 59 chr1 178291659 178291719 -18903713 - B1F1 SINE Alu -19 130 78 5 1945 1131 145 115 0 chr1 178291719 178291919 -18903513 + URR1A DNA MER1_type 4 226 0 5 1945 334 276 70 94 chr1 178291919 178291975 -18903457 - ID_B1 SINE B4 -75 149 100 5 1945 290 354 22 59 chr1 178291975 178291993 -18903439 - B1F1 SINE Alu -72 77 1 5 1945 22 0 0 0 chr1 178292958 178292980 -18902452 + AT_rich Low_complexity Low_complexity 1 22 0 5 1945 3748 271 56 32 chr1 178292980 178294449 -18900983 - Lx8 LINE L1 -5 7468 5965 5 1945 260 235 87 14 chr1 178294673 178294742 -18900690 + B1F SINE Alu 61 134 -15 5 1945 300 303 0 0 chr1 178294681 178294757 -18900675 + ID_B1 SINE B4 149 224 0 5 1945 438 157 32 43 chr1 178295738 178295831 -18899601 - MER57A-int LTR ERV1 -292 5895 5804 5 1945 447 284 88 22 chr1 178296110 178296247 -18899185 + RLTR14 LTR ERV1 224 369 -13 5 1945 555 354 8 53 chr1 178296581 178296826 -18898606 - LTR16D2 LTR ERVL -251 321 88 5 1945 249 328 125 59 chr1 178297532 178297804 -18897628 + L2a LINE L2 2304 2593 -826 5 1945 336 246 157 30 chr1 178299076 178299210 -18896222 + LTR48 LTR ERV1 1 151 -636 5 1945 235 297 89 55 chr1 178299445 178299591 -18895841 + MER34 LTR ERV1 308 458 -84 5 1945 311 259 124 44 chr1 178300227 178300340 -18895092 - L1M5 LINE L1 -474 5705 5584 5 1945 4825 158 69 36 chr1 178300346 178301211 -18894221 - RMER19B LTR ERVK -6 896 3 5 1945 327 257 36 18 chr1 178301330 178301441 -18893991 + Lx8 LINE L1 6887 6999 -474 5 1945 232 365 12 0 chr1 178301444 178301529 -18893903 + L2a LINE L2 3336 3421 -5 5 1945 252 0 0 0 chr1 178301668 178301696 -18893736 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1945 490 277 25 0 chr1 178301700 178301819 -18893613 - B1F SINE Alu -21 128 7 5 1945 304 347 24 24 chr1 178301708 178301832 -18893600 - ID_B1 SINE B4 -26 198 75 5 1945 279 373 67 24 chr1 178302169 178302334 -18893098 - L2b LINE L2 -1 3374 3203 5 1945 635 330 75 22 chr1 178302539 178302858 -18892574 - ORR1E LTR MaLR -23 336 1 5 1945 180 0 0 0 chr1 178303293 178303313 -18892119 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1945 238 339 45 30 chr1 178303328 178303462 -18891970 - L2a LINE L2 -11 3415 3280 5 1945 252 0 0 0 chr1 178303540 178303568 -18891864 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1945 1063 319 105 34 chr1 178304300 178304791 -18890641 - MLT1F LTR MaLR -11 558 2 5 1945 183 129 0 0 chr1 178304795 178304826 -18890606 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 5 1945 239 359 0 0 chr1 178304987 178305051 -18890381 - Charlie17a DNA MER1_type -20 199 136 5 1945 389 337 77 18 chr1 178305257 178305426 -18890006 - L1MEe LINE L1 -3528 2618 2440 5 1945 344 301 203 29 chr1 178305719 178305976 -18889456 - L1MEe LINE L1 -4142 2100 1810 5 1945 21 57 0 0 chr1 178307720 178307755 -18887677 + AT_rich Low_complexity Low_complexity 1 35 0 5 1945 582 261 158 24 chr1 178308175 178308340 -18887092 - B4 SINE B4 -75 217 31 5 1945 441 236 9 22 chr1 178310601 178310828 -18884604 + (TG)n Simple_repeat Simple_repeat 1 223 0 5 1945 489 313 0 73 chr1 178310829 178311008 -18884424 - B4A SINE B4 0 292 127 5 1945 256 270 0 16 chr1 178311025 178311089 -18884343 - B4 SINE B4 -228 64 2 5 1945 1273 303 62 52 chr1 178311108 178311721 -18883711 + MER67C LTR ERV1 5 623 -88 5 1945 1099 278 14 7 chr1 178311744 178312030 -18883402 - B4 SINE B4 -4 288 1 5 1945 480 300 75 37 chr1 178312150 178312435 -18882997 - ORR1E LTR MaLR -3 376 1 5 1945 1998 239 87 73 chr1 178312445 178313180 -18882252 - RLTR40 LTR ERVK -47 770 26 5 1945 1914 116 9 6 chr1 178313187 178313518 -18881914 + L1_Mur2 LINE L1 3020 3351 -2526 5 1945 1113 173 93 39 chr1 178313524 178313782 -18881650 + RLTR22_Mur LTR ERVK 3 274 -1574 5 1945 25341 83 18 1 chr1 178313782 178319506 -18875926 - L1Md_F3 LINE L1 -15 6569 631 5 1945 3279 94 45 15 chr1 178319506 178320033 -18875399 + RLTR22_Mur LTR ERVK 264 806 -1042 5 1945 14229 130 22 11 chr1 178320488 178321692 -18873740 + Lx5 LINE L1 3357 4571 -1306 5 1945 3381 96 2 4 chr1 178321692 178322163 -18873269 - L1_Mus4 LINE L1 -1 6635 6166 5 1945 14229 163 28 11 chr1 178322163 178324584 -18870848 + Lx5 LINE L1 4572 7046 -4 5 1945 206 128 26 0 chr1 178324634 178324673 -18870759 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 5 1945 1189 288 56 35 chr1 178325395 178325826 -18869606 - Lx8 LINE L1 -914 6559 6120 5 1945 186 191 0 0 chr1 178326280 178326322 -18869110 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1945 409 274 49 0 chr1 178326862 178326964 -18868468 + PB1D7 SINE Alu 7 113 -7 5 1945 566 282 64 12 chr1 178327842 178328014 -18867418 + B3A SINE B2 2 182 -16 5 1945 26 30 0 0 chr1 178328090 178328123 -18867309 + AT_rich Low_complexity Low_complexity 1 33 0 5 1945 590 280 59 70 chr1 178328220 178328567 -18866865 - MTEa LTR MaLR 0 379 22 5 1945 275 192 14 0 chr1 178329129 178329202 -18866230 + GA-rich Low_complexity Low_complexity 2 75 0 5 1945 931 309 114 95 chr1 178330411 178331147 -18864285 + MER21B LTR ERV1 7 756 -107 5 1945 276 183 12 24 chr1 178331198 178331282 -18864150 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 5 1945 584 230 0 22 chr1 178331915 178332097 -18863335 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 5 1945 180 288 0 0 chr1 178332122 178332195 -18863237 + (TCCA)n Simple_repeat Simple_repeat 3 75 0 5 1945 183 287 39 115 chr1 178333107 178333237 -18862195 + MIRb SINE MIR 62 181 -87 5 1945 459 0 0 0 chr1 178333496 178333547 -18861885 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1945 345 75 0 0 chr1 178333547 178333599 -18861833 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1945 1054 266 39 39 chr1 178333616 178333898 -18861534 - B4 SINE B4 -9 283 2 5 1945 228 273 121 33 chr1 178334559 178334650 -18860782 + MTE2b LTR MaLR 267 365 -14 5 1945 430 277 0 10 chr1 178335142 178335244 -18860188 - Lx7 LINE L1 -538 7158 7058 5 1945 304 286 56 19 chr1 178336341 178336448 -18858984 + MLT1H LTR MaLR 17 127 -422 5 1945 483 18 0 0 chr1 178336624 178336680 -18858752 + (TATG)n Simple_repeat Simple_repeat 3 58 0 5 1945 369 336 22 0 chr1 178336713 178336847 -18858585 + MLT1H LTR MaLR 407 543 -6 5 1945 256 265 0 29 chr1 178337211 178337281 -18858151 + GA-rich Low_complexity Low_complexity 1 68 0 5 1945 207 0 0 0 chr1 178337571 178337594 -18857838 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1945 276 266 31 0 chr1 178337665 178337729 -18857703 + MER97c DNA MER1_type? 20 85 -1005 5 1945 278 277 1 125 chr1 178338042 178338194 -18857238 - L1MA4 LINE L1 -371 5929 5728 5 1945 333 0 0 0 chr1 178338283 178338320 -18857112 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 5 1945 21 89 0 0 chr1 178338677 178338733 -18856699 + AT_rich Low_complexity Low_complexity 1 56 0 5 1945 207 257 0 28 chr1 178338830 178338887 -18856545 + T-rich Low_complexity Low_complexity 15 70 0 5 1945 323 333 50 0 chr1 178338887 178339028 -18856404 - B1_Mur3 SINE Alu -1 148 1 5 1945 207 257 0 28 chr1 178339028 178339042 -18856390 + T-rich Low_complexity Low_complexity 1 14 0 5 1945 2777 76 53 0 chr1 178339065 178339406 -18856026 - RLTR10D LTR ERVK 0 359 1 5 1945 223 333 38 25 chr1 178339414 178339494 -18855938 - B1F1 SINE Alu -66 83 3 5 1945 1584 251 44 71 chr1 178339860 178340424 -18855008 - RLTR40 LTR ERVK -46 771 222 5 1945 2320 121 19 3 chr1 178340424 178340748 -18854684 + ORR1A4 LTR MaLR 1 329 0 5 1945 1584 251 44 71 chr1 178340748 178340771 -18854661 - RLTR40 LTR ERVK -596 221 200 5 1945 2000 145 56 0 chr1 178340773 178341110 -18854322 + ORR1B2 LTR MaLR 3 358 -9 5 1945 700 246 34 43 chr1 178341113 178341321 -18854111 - RLTR40 LTR ERVK -611 206 1 5 1945 21 0 0 0 chr1 178341381 178341402 -18854030 + AT_rich Low_complexity Low_complexity 1 21 0 5 1945 183 42 0 0 chr1 178341592 178341616 -18853816 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1945 552 163 0 0 chr1 178341959 178342088 -18853344 + (TG)n Simple_repeat Simple_repeat 1 129 0 5 1945 316 282 107 40 chr1 178342356 178342533 -18852899 + Tigger15a DNA TcMar 259 447 -268 5 1945 714 291 6 0 chr1 178342633 178342791 -18852641 + RSINE1 SINE B4 5 163 -2 5 1945 186 71 0 0 chr1 178344169 178344197 -18851235 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 5 1945 263 304 175 19 chr1 178344492 178344703 -18850729 + L1MC4 LINE L1 6459 6702 -1340 5 1945 362 255 110 41 chr1 178344696 178344941 -18850491 + L1MC4a LINE L1 6603 6864 -1018 5 1945 1782 21 0 0 chr1 178345155 178345347 -18850085 + B2_Mm1t SINE B2 1 192 -1 5 1945 295 314 83 25 chr1 178345952 178346073 -18849359 + Lx8 LINE L1 7230 7357 -116 5 1945 1927 139 3 0 chr1 178346111 178346399 -18849033 + RLTR33 LTR ERVK 385 673 -5 5 1945 1119 276 66 0 chr1 178346399 178346700 -18848732 - Lx8 LINE L1 -376 7097 6777 5 1945 201 119 23 23 chr1 178346716 178346759 -18848673 + (CAA)n Simple_repeat Simple_repeat 1 43 0 5 1945 314 222 80 102 chr1 178347639 178347815 -18847617 + L1MD LINE L1 3106 3277 -2869 5 1945 261 304 97 10 chr1 178348055 178348158 -18847274 - MER20 DNA MER1_type -107 112 1 5 1945 553 283 90 68 chr1 178348214 178348760 -18846672 + L1M3 LINE L1 3526 4083 -2057 5 1945 339 65 0 0 chr1 178348777 178348823 -18846609 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1945 620 303 183 17 chr1 178348856 178349091 -18846341 - B4A SINE B4 -18 274 1 5 1945 806 215 132 16 chr1 178349106 178349295 -18846137 - B3 SINE B2 -5 211 1 5 1945 369 331 89 51 chr1 178349357 178349684 -18845748 + L1M5 LINE L1 4220 4565 -1581 5 1945 583 290 57 13 chr1 178349684 178349807 -18845625 + RSINE1 SINE B4 2 124 -41 5 1945 552 15 0 0 chr1 178349807 178349872 -18845560 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1945 583 290 57 13 chr1 178349872 178349905 -18845527 + RSINE1 SINE B4 125 164 -1 5 1945 369 331 89 51 chr1 178349905 178350130 -18845302 + L1M5 LINE L1 4566 4793 -1353 5 1945 253 311 194 35 chr1 178350169 178350339 -18845093 - MER3 DNA MER1_type -11 198 2 5 1945 279 269 158 12 chr1 178350354 178350560 -18844872 - L1MA5 LINE L1 -3 6297 6064 5 1945 280 354 98 15 chr1 178350560 178350692 -18844740 + B1F SINE Alu 1 143 -6 5 1945 405 58 0 0 chr1 178351066 178351118 -18844314 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1945 1102 105 0 0 chr1 178351221 178351374 -18844058 + B2_Mm2 SINE B2 1 153 -42 6 1945 323 23 0 22 chr1 178351374 178351419 -18844013 + (CATA)n Simple_repeat Simple_repeat 4 47 0 6 1945 280 318 80 0 chr1 178351512 178351600 -18843832 + PB1D7 SINE Alu 21 115 -5 6 1945 265 318 0 22 chr1 178351600 178351690 -18843742 + GA-rich Low_complexity Low_complexity 5 92 0 6 1945 319 309 0 12 chr1 178352124 178352206 -18843226 + ID4_ SINE ID 2 82 -1 6 1945 866 251 37 0 chr1 178352151 178352338 -18843094 + ID_B1 SINE B4 29 222 -2 6 1945 405 39 0 0 chr1 178352542 178352593 -18842839 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 6 1945 836 287 102 8 chr1 178353052 178353298 -18842134 + B4A SINE B4 2 270 -22 6 1945 495 33 0 0 chr1 178353299 178353360 -18842072 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1945 354 329 187 19 chr1 178353460 178354031 -18841401 - L2 LINE L2 -1642 1777 1111 6 1945 30 59 0 0 chr1 178354791 178354842 -18840590 + AT_rich Low_complexity Low_complexity 1 51 0 6 1945 269 284 87 79 chr1 178355506 178355735 -18839697 + Charlie7 DNA MER1_type 1610 1840 -772 6 1945 25 0 0 0 chr1 178355742 178355767 -18839665 + AT_rich Low_complexity Low_complexity 1 25 0 6 1945 681 239 16 26 chr1 178355821 178356012 -18839420 + B3 SINE B2 8 192 -3 6 1945 234 0 0 0 chr1 178357178 178357204 -18838228 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 6 1945 207 0 0 0 chr1 178359127 178359150 -18836282 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1945 348 233 39 39 chr1 178359206 178359385 -18836047 + (CATA)n Simple_repeat Simple_repeat 2 180 0 6 1945 492 293 93 0 chr1 178359691 178359841 -18835591 + RSINE1 SINE B4 2 165 0 6 1945 423 0 0 0 chr1 178359904 178359951 -18835481 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1945 189 0 0 0 chr1 178361332 178361353 -18834079 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1945 1090 63 7 0 chr1 178361353 178361495 -18833937 - B1_Mus1 SINE Alu 0 148 6 6 1945 549 230 93 81 chr1 178361356 178361517 -18833915 - B4 SINE B4 -69 223 61 6 1945 248 119 0 0 chr1 178361949 178361991 -18833441 + Lx3_Mus LINE L1 6627 6668 -341 6 1945 2371 96 38 43 chr1 178362223 178362592 -18832840 - Lx LINE L1 -4 6650 6284 6 1945 460 324 118 49 chr1 178362600 178363093 -18832339 - L2 LINE L2 -887 2532 2006 6 1945 576 58 0 113 chr1 178363473 178363570 -18831862 - Lx3C LINE L1 -1046 5930 5845 6 1945 7197 88 7 9 chr1 178363573 178364542 -18830890 + Lx3_Mus LINE L1 6035 7001 -8 6 1945 221 262 33 0 chr1 178364607 178364668 -18830764 - B3 SINE B2 -144 72 10 6 1945 306 50 0 0 chr1 178365192 178365232 -18830200 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1945 297 0 0 0 chr1 178365803 178365836 -18829596 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1945 1074 68 0 0 chr1 178365839 178365971 -18829461 - B1_Mus2 SINE Alu -11 136 5 6 1945 21 0 0 0 chr1 178365971 178365992 -18829440 + GC_rich Low_complexity Low_complexity 1 21 0 6 1945 323 280 76 0 chr1 178366775 178366907 -18828525 + L1ME3A LINE L1 6025 6166 -7 6 1945 286 123 17 17 chr1 178367774 178367832 -18827600 + CT-rich Low_complexity Low_complexity 6 63 0 6 1945 421 273 117 91 chr1 178368568 178368842 -18826590 + B4 SINE B4 1 281 -11 6 1945 1091 112 6 0 chr1 178369338 178369508 -18825924 + (GA)n Simple_repeat Simple_repeat 2 172 0 6 1945 260 336 67 8 chr1 178370048 178370168 -18825264 + L2b LINE L2 3234 3360 -15 6 1945 216 0 0 0 chr1 178371171 178371195 -18824237 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1945 275 301 139 40 chr1 178372257 178372430 -18823002 + MIR SINE MIR 9 198 -64 6 1945 3251 62 26 0 chr1 178372462 178372852 -18822580 - MTB LTR MaLR 0 400 1 6 1945 201 308 0 0 chr1 178373078 178373130 -18822302 + (CACCAT)n Simple_repeat Simple_repeat 3 54 0 6 1945 208 211 26 0 chr1 178373218 178373294 -18822138 + (CACCAT)n Simple_repeat Simple_repeat 2 79 0 6 1945 5016 48 17 9 chr1 178373302 178373884 -18821548 + LTRIS_Mus LTR ERV1 1 587 0 6 1945 1080 156 0 11 chr1 178374218 178374393 -18821039 - B2_Mm2 SINE B2 -22 173 1 6 1945 235 342 159 50 chr1 178374959 178375417 -18820015 + L2a LINE L2 2919 3426 0 6 1945 248 338 14 0 chr1 178375624 178375698 -18819734 + L2b LINE L2 3292 3366 -9 6 1945 315 0 0 0 chr1 178375739 178375774 -18819658 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1945 720 0 0 0 chr1 178375814 178375894 -18819538 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 6 1945 5794 61 20 3 chr1 178375897 178376590 -18818842 - L1Md_F2 LINE L1 -17 6565 5861 6 1945 206 98 0 47 chr1 178377257 178377300 -18818132 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 6 1945 658 316 112 23 chr1 178377333 178377592 -18817840 - B4 SINE B4 -6 286 5 6 1945 227 317 149 58 chr1 178377639 178377813 -18817619 - B3A SINE B2 -7 191 2 6 1945 607 282 30 8 chr1 178377683 178377815 -18817617 - RSINE1 SINE B4 -30 135 1 6 1945 230 0 0 32 chr1 178377991 178378022 -18817410 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1945 4443 144 53 47 chr1 178380183 178380991 -18814441 + Lx4A LINE L1 6165 6977 -81 6 1945 226 229 157 0 chr1 178380996 178381066 -18814366 - B3A SINE B2 -117 81 1 6 1945 341 136 15 0 chr1 178381872 178381938 -18813494 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1945 238 126 57 43 chr1 178381981 178382122 -18813310 + (TA)n Simple_repeat Simple_repeat 1 143 0 6 1945 222 111 0 0 chr1 178382202 178382217 -18813215 + (TA)n Simple_repeat Simple_repeat 1 15 0 6 1945 297 0 0 0 chr1 178382217 178382250 -18813182 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1945 222 111 0 0 chr1 178382250 178382270 -18813162 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1945 688 338 102 82 chr1 178382394 178382894 -18812538 + MLT2B3 LTR ERVL 1 510 -44 6 1945 318 302 167 0 chr1 178383685 178383877 -18811555 + Tigger7 DNA MER2_type 2259 2482 -9 6 1945 2063 152 0 57 chr1 178384648 178384997 -18810435 + ORR1A4 LTR MaLR 1 329 0 6 1945 601 240 136 7 chr1 178385607 178385762 -18809670 + ID_B1 SINE B4 2 176 -48 6 1945 298 313 0 0 chr1 178385845 178385928 -18809504 + MER53 DNA hAT 105 187 -6 6 1945 2969 44 3 3 chr1 178386167 178386512 -18808920 + L1Md_F2 LINE L1 6238 6582 0 6 1945 22 0 0 0 chr1 178386559 178386581 -18808851 + AT_rich Low_complexity Low_complexity 1 22 0 6 1945 722 273 19 67 chr1 178386680 178386888 -18808544 + B3A SINE B2 1 198 0 6 1945 1822 114 16 68 chr1 178386916 178387237 -18808195 - ORR1A4 LTR MaLR -22 307 4 6 1945 1113 278 128 20 chr1 178388436 178388788 -18806644 - MTD LTR MaLR -21 398 9 6 243 380 114 211 79 chr1 178388890 178389004 -18806428 + L1_Mus3 LINE L1 6502 6630 -8 6 1946 463 244 190 0 chr1 178389283 178389444 -18805988 - L1MB7 LINE L1 -380 5920 5729 6 1946 401 283 113 30 chr1 178389566 178389832 -18805600 - L1MB7 LINE L1 -624 5554 5267 6 1946 3574 139 9 58 chr1 178389826 178390059 -18805373 + L1_Mur2 LINE L1 4369 4600 -1277 6 1946 2867 193 7 36 chr1 178390059 178390617 -18804815 + Lx2B LINE L1 6459 7000 0 6 1946 1065 89 0 22 chr1 178390619 178390803 -18804629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1946 3574 139 9 58 chr1 178390803 178391200 -18804232 + L1_Mur2 LINE L1 4601 4971 -906 6 1946 659 304 80 89 chr1 178391196 178391282 -18804150 - L1MB7 LINE L1 -864 5282 5220 6 1946 735 206 69 0 chr1 178391282 178391413 -18804019 - B1_Mur1 SINE Alu -9 140 1 6 1946 659 304 80 89 chr1 178391413 178391999 -18803433 - L1MB7 LINE L1 -927 5219 4616 6 1946 260 37 55 18 chr1 178392008 178392063 -18803369 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 6 1946 3050 165 270 7 chr1 178392082 178392796 -18802636 + RMER19B LTR ERVK 1 902 0 6 1946 312 291 96 32 chr1 178392882 178393038 -18802394 - L1MB7 LINE L1 -1652 4494 4329 6 1946 692 279 67 49 chr1 178393049 178393316 -18802116 + B4A SINE B4 2 273 -19 6 1946 815 308 42 28 chr1 178393704 178393824 -18801608 - L1MB7 LINE L1 -2191 3949 3835 6 1946 2261 152 90 16 chr1 178393824 178394212 -18801220 + MTC LTR MaLR 5 421 0 6 1946 815 308 42 28 chr1 178394212 178394449 -18800983 - L1MB7 LINE L1 -2306 3834 3587 6 1946 506 370 45 62 chr1 178394560 178394981 -18800451 + L1MDa LINE L1 146 559 -6074 6 1946 287 344 52 22 chr1 178395173 178395307 -18800125 + L1MDa LINE L1 974 1111 -5522 6 1946 277 312 0 12 chr1 178395322 178395403 -18800029 - ID4_ SINE ID -1 82 3 6 1946 402 291 18 9 chr1 178395403 178395514 -18799918 - PB1D10 SINE Alu -5 112 1 6 1946 396 229 0 103 chr1 178395525 178395632 -18799800 - PB1D7 SINE Alu 0 120 25 6 1946 351 65 0 0 chr1 178395727 178395773 -18799659 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1946 276 30 0 0 chr1 178395773 178395806 -18799626 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1946 1080 136 0 0 chr1 178395806 178395982 -18799450 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 6 1946 455 260 107 67 chr1 178397186 178397494 -18797938 + ORR1E LTR MaLR 4 374 -5 6 1946 217 68 0 43 chr1 178397561 178397607 -18797825 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1946 1208 179 103 8 chr1 178398117 178398243 -18797189 + RMER1A Other Other 754 879 -151 6 1946 297 0 0 0 chr1 178398243 178398276 -18797156 + (TTGG)n Simple_repeat Simple_repeat 4 36 0 6 1946 1208 179 103 8 chr1 178398276 178398402 -18797030 + RMER1A Other Other 880 1029 -1 6 1946 417 256 133 16 chr1 178398773 178398936 -18796496 - MLT1E1A LTR MaLR -11 669 364 6 1946 202 298 23 35 chr1 178398988 178399075 -18796357 + L2 LINE L2 2461 2546 -873 6 1946 252 0 0 0 chr1 178399076 178399104 -18796328 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 6 1946 1875 199 83 71 chr1 178399130 178399520 -18795912 - RLTR18B LTR ERVK -13 499 105 6 1946 194 0 39 0 chr1 178399520 178399546 -18795886 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1946 1875 199 83 71 chr1 178399546 178399648 -18795784 - RLTR18B LTR ERVK -408 104 1 6 1946 268 322 211 16 chr1 178399655 178399958 -18795474 + L2 LINE L2 2575 2936 -483 6 1946 590 237 153 59 chr1 178400403 178400605 -18794827 - B4A SINE B4 0 292 72 6 1946 360 0 0 0 chr1 178401711 178401751 -18793681 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1946 255 229 62 125 chr1 178401778 178401858 -18793574 - B4 SINE B4 -1 291 217 6 1946 618 329 19 0 chr1 178401906 178402067 -18793365 - RSINE1 SINE B4 0 165 2 7 1946 224 91 0 22 chr1 178402075 178402120 -18793312 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 7 1946 238 270 75 43 chr1 178402197 178402290 -18793142 - B3A SINE B2 -102 96 1 7 1946 415 362 23 12 chr1 178402539 178402796 -18792636 + MIRb SINE MIR 1 260 -8 7 1946 198 71 0 0 chr1 178403440 178403468 -18791964 + (TTG)n Simple_repeat Simple_repeat 2 29 0 7 1946 4983 98 18 61 chr1 178403670 178404124 -18791308 - RMER17A LTR ERVK 0 751 337 7 1946 1284 89 0 0 chr1 178404124 178404304 -18791128 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1946 4983 98 18 61 chr1 178404304 178404634 -18790798 - RMER17A LTR ERVK -415 336 1 7 1946 315 250 135 0 chr1 178404908 178405004 -18790428 - PB1D10 SINE Alu -7 110 2 7 1946 189 195 0 0 chr1 178405107 178405148 -18790284 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1946 206 368 77 10 chr1 178405217 178405412 -18790020 + L2 LINE L2 2564 2771 -648 7 1946 21 0 0 0 chr1 178405833 178405854 -18789578 + AT_rich Low_complexity Low_complexity 1 21 0 7 1946 386 267 99 49 chr1 178406133 178406275 -18789157 + B4A SINE B4 2 150 -142 7 1946 385 346 67 50 chr1 178406302 178406542 -18788890 + B4A SINE B4 49 292 0 7 1946 201 74 0 0 chr1 178406587 178406614 -18788818 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1946 1287 205 5 0 chr1 178407192 178407407 -18788025 + B3 SINE B2 1 216 0 7 1946 389 20 20 0 chr1 178407416 178407466 -18787966 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1946 25 31 0 0 chr1 178407568 178407600 -18787832 + AT_rich Low_complexity Low_complexity 1 32 0 7 1946 672 276 0 0 chr1 178407948 178408082 -18787350 - RSINE1 SINE B4 -28 137 4 7 1946 22 0 0 0 chr1 178408609 178408631 -18786801 + AT_rich Low_complexity Low_complexity 1 22 0 7 1946 3384 143 85 9 chr1 178409050 178409592 -18785840 + RMER4B LTR ERVK 1 583 -2 7 1946 267 314 56 19 chr1 178409708 178409815 -18785617 - ORR1D1 LTR MaLR 0 374 264 7 1946 492 32 0 0 chr1 178410440 178410502 -18784930 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1946 319 362 0 0 chr1 178411642 178411889 -18783543 + (CCCA)n Simple_repeat Simple_repeat 1 247 0 7 1946 220 305 12 38 chr1 178411829 178411989 -18783443 + C-rich Low_complexity Low_complexity 4 159 0 7 1946 264 321 0 13 chr1 178412660 178412739 -18782693 - MIR3 SINE MIR -1 207 130 7 1946 284 274 0 0 chr1 178413274 178413347 -18782085 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 7 1946 248 217 29 0 chr1 178413488 178413557 -18781875 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 7 1946 311 287 27 30 chr1 178413783 178413905 -18781527 + RSINE1 SINE B4 5 125 -167 7 1946 252 254 16 0 chr1 178414072 178414135 -18781297 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1946 300 267 97 52 chr1 178414373 178414527 -18780905 + L1M2 LINE L1 2360 2520 -4329 7 1946 218 316 12 48 chr1 178414529 178414612 -18780820 + ID4_ SINE ID 2 81 -2 7 1946 248 296 0 22 chr1 178414640 178414730 -18780702 + L1M2 LINE L1 2518 2605 -4244 7 1946 927 296 22 65 chr1 178414774 178414822 -18780610 + L1M2 LINE L1 6096 6142 -860 7 1946 771 236 0 0 chr1 178414822 178414962 -18780470 + B1_Mur1 SINE Alu 2 141 -8 7 1946 927 296 22 65 chr1 178414962 178415361 -18780071 + L1M2 LINE L1 6143 6524 -478 7 1946 817 262 70 85 chr1 178415360 178415748 -18779684 + L1MA8 LINE L1 5754 6135 -156 7 1946 370 303 28 0 chr1 178415848 178415957 -18779475 + L1MA8 LINE L1 6170 6281 -10 7 1946 324 273 0 0 chr1 178416949 178417015 -18778417 - ID2 SINE ID -15 68 3 7 1946 476 299 30 7 chr1 178417036 178417171 -18778261 - B1F1 SINE Alu -11 138 1 7 1946 645 218 0 0 chr1 178417770 178417880 -18777552 + PB1D7 SINE Alu 3 112 -8 7 1946 353 297 120 77 chr1 178417944 178418125 -18777307 + MLT1J LTR MaLR 287 473 -39 7 1946 204 40 0 0 chr1 178418125 178418150 -18777282 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1946 353 297 120 77 chr1 178418150 178418176 -18777256 + MLT1J LTR MaLR 474 502 -10 7 1946 387 0 0 0 chr1 178418930 178418973 -18776459 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1946 274 74 37 0 chr1 178419435 178419489 -18775943 + (CCCCCA)n Simple_repeat Simple_repeat 3 58 0 7 1946 907 271 14 66 chr1 178419895 178420258 -18775174 + RLTR15 LTR ERVK 1 344 -15 7 1946 3163 253 80 12 chr1 178420324 178421184 -18774248 + RCHARR1 DNA MER1_type 56 974 0 7 1946 216 0 0 0 chr1 178421456 178421480 -18773952 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 1946 377 350 93 53 chr1 178421655 178421902 -18773530 - MER58B DNA MER1_type -81 260 4 7 1946 271 270 86 25 chr1 178422370 178422533 -18772899 - Tigger12A DNA MER2_type -11 780 608 7 1946 247 316 26 26 chr1 178422622 178422700 -18772732 - Tigger12A DNA MER2_type -434 159 82 7 1946 221 200 67 0 chr1 178424771 178424861 -18770571 + (CATAT)n Simple_repeat Simple_repeat 3 98 0 7 1946 759 265 93 4 chr1 178424886 178425155 -18770277 + L1M2 LINE L1 4679 4971 -1172 7 1946 1145 152 106 0 chr1 178425614 178425812 -18769620 - URR1B DNA MER1_type -6 219 1 7 1946 464 267 10 0 chr1 178426094 178426195 -18769237 + ORR1E LTR MaLR 1 102 -257 7 1946 319 302 43 0 chr1 178427076 178427192 -18768240 + MER34 LTR ERV1 380 500 -42 7 1946 207 255 0 0 chr1 178427568 178427615 -18767817 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1946 224 162 39 39 chr1 178427627 178427704 -18767728 + (TATG)n Simple_repeat Simple_repeat 4 80 0 7 1946 193 322 0 33 chr1 178428103 178428164 -18767268 + MIRm SINE MIR 116 174 -102 7 1946 33 0 0 0 chr1 178428345 178428378 -18767054 + AT_rich Low_complexity Low_complexity 1 33 0 7 1946 189 107 0 0 chr1 178428679 178428707 -18766725 + (TGG)n Simple_repeat Simple_repeat 1 28 0 7 1946 277 254 122 8 chr1 178428808 178428931 -18766501 + Arthur1 DNA Tip100 3362 3498 -449 7 1946 23 78 0 0 chr1 178429000 178429051 -18766381 + AT_rich Low_complexity Low_complexity 1 51 0 7 1946 230 284 34 0 chr1 178429850 178429938 -18765494 - L1MC4a LINE L1 -8 7874 7784 7 1946 253 208 97 0 chr1 178429972 178430044 -18765388 - MER53 DNA hAT -5 188 110 7 1946 703 320 30 15 chr1 178430271 178430474 -18764958 + B4 SINE B4 72 277 -15 7 1946 411 21 0 0 chr1 178430537 178430585 -18764847 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 7 1946 1215 124 11 6 chr1 178430620 178430798 -18764634 + B2_Mm1t SINE B2 1 179 -14 7 1946 375 104 8 34 chr1 178430845 178430911 -18764521 + B2_Mm2 SINE B2 47 114 -102 7 1946 32 0 0 0 chr1 178430924 178430956 -18764476 + AT_rich Low_complexity Low_complexity 1 32 0 7 1946 432 0 0 0 chr1 178431579 178431627 -18763805 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1946 210 71 0 0 chr1 178431778 178431806 -18763626 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1946 288 53 0 0 chr1 178431936 178431974 -18763458 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1946 9171 4 0 0 chr1 178432061 178433453 -18761979 - L1Md_A LINE L1 0 6582 5191 7 1946 8443 2 0 0 chr1 178433452 178434376 -18761056 + L1Md_A LINE L1 4236 5159 -724 7 1946 988 253 63 34 chr1 178434402 178434639 -18760793 - B4 SINE B4 -47 245 2 7 1946 3120 70 21 92 chr1 178434639 178434985 -18760447 - RLTR44C LTR ERVK -27 475 175 7 1946 315 0 0 0 chr1 178434985 178435020 -18760412 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1946 3120 70 21 92 chr1 178435020 178435184 -18760248 - RLTR44C LTR ERVK -328 174 4 7 1946 334 361 0 0 chr1 178436087 178436195 -18759237 + (TG)n Simple_repeat Simple_repeat 1 108 0 7 1946 528 275 97 82 chr1 178436222 178436491 -18758941 - B4 SINE B4 -18 274 2 7 1946 9252 177 47 38 chr1 178436950 178439451 -18755981 - Lx7 LINE L1 0 7696 5174 7 1946 214 315 0 0 chr1 178440628 178440682 -18754750 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1946 465 304 75 7 chr1 178440691 178440837 -18754595 - B4A SINE B4 -4 288 133 7 1946 450 287 0 53 chr1 178442400 178442514 -18752918 - ID_B1 SINE B4 -30 194 87 7 1946 235 259 56 0 chr1 178443322 178443376 -18752056 - MLT1A0 LTR MaLR -307 58 2 7 1946 6736 56 8 0 chr1 178443825 178444609 -18750823 + L1_Mus1 LINE L1 5778 6567 0 7 1946 187 54 0 51 chr1 178444627 178444666 -18750766 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 1946 531 236 142 11 chr1 178445610 178445786 -18749646 - Lx2B LINE L1 -3 6997 6799 7 1946 514 316 92 69 chr1 178446042 178446389 -18749043 + ORR1D2 LTR MaLR 12 366 -4 7 1946 1539 192 131 37 chr1 178446581 178446932 -18748500 - ORR1C2 LTR MaLR 0 384 1 7 1946 567 66 0 0 chr1 178447049 178447125 -18748307 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1946 978 304 50 46 chr1 178447163 178447639 -18747793 - L1MD2 LINE L1 -239 6120 5643 7 1946 259 349 32 165 chr1 178447715 178447873 -18747559 + B4A SINE B4 2 138 -154 7 1946 205 200 91 0 chr1 178448272 178448327 -18747105 + MIRb SINE MIR 190 249 -19 7 1946 424 347 156 15 chr1 178449309 178449470 -18745962 - L2a LINE L2 -22 3404 3212 7 1946 684 83 0 0 chr1 178449470 178449566 -18745866 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 7 1946 650 345 153 16 chr1 178449566 178450052 -18745380 - L2a LINE L2 -215 3211 2646 7 1946 486 0 0 0 chr1 178450052 178450106 -18745326 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1946 650 344 152 16 chr1 178450106 178450362 -18745070 - L2a LINE L2 -774 2645 2361 7 1946 2655 186 177 16 chr1 178450367 178450995 -18744437 - RMER19A LTR ERVK -8 729 1 7 1946 427 275 28 21 chr1 178450995 178451136 -18744296 - L2a LINE L2 -1055 2364 2223 7 1946 300 111 0 0 chr1 178451162 178451207 -18744225 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 7 1946 597 295 32 78 chr1 178451613 178451830 -18743602 + B4A SINE B4 1 207 -85 7 1946 785 229 41 62 chr1 178451831 178452026 -18743406 + B3A SINE B2 8 198 0 7 1946 245 343 15 0 chr1 178452040 178452107 -18743325 + B4 SINE B4 222 289 -3 7 1946 854 223 59 16 chr1 178452203 178452390 -18743042 + B3 SINE B2 2 196 -20 7 1946 276 30 0 0 chr1 178452390 178452423 -18743009 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 7 1946 313 325 68 50 chr1 178453573 178453793 -18741639 - MIR SINE MIR -29 239 9 7 1946 248 368 87 59 chr1 178453884 178453901 -18741531 + MLT1K LTR MaLR 193 204 -391 7 1946 3097 101 66 0 chr1 178453901 178454327 -18741105 + Lx LINE L1 6195 6648 -6 7 1946 248 368 87 59 chr1 178454327 178454667 -18740765 + MLT1K LTR MaLR 205 560 -35 7 1946 183 213 13 26 chr1 178455414 178455491 -18739941 + GA-rich Low_complexity Low_complexity 3 78 0 7 1946 1847 245 128 17 chr1 178455632 178456217 -18739215 - Lx8 LINE L1 -1 7472 6823 8 1946 287 177 10 30 chr1 178456540 178456639 -18738793 + CT-rich Low_complexity Low_complexity 1 97 0 8 1946 965 241 34 10 chr1 178457833 178458042 -18737390 + ID_B1 SINE B4 2 215 -9 8 1946 209 237 212 20 chr1 178459312 178459411 -18736021 - MIRc SINE MIR -88 180 63 8 1946 414 0 0 0 chr1 178459425 178459471 -18735961 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1946 223 283 9 132 chr1 178460223 178460337 -18735095 - MIRb SINE MIR -30 238 139 8 1946 360 302 31 0 chr1 178460735 178460831 -18734601 - B1F SINE Alu -13 136 38 8 1946 876 294 68 0 chr1 178460842 178461090 -18734342 + MLT1B LTR MaLR 125 389 -1 8 1946 227 277 70 35 chr1 178461238 178461466 -18733966 + L1ME3 LINE L1 1837 2072 -4170 8 1946 34 42 0 0 chr1 178461620 178461668 -18733764 + AT_rich Low_complexity Low_complexity 1 48 0 8 1946 1053 327 103 38 chr1 178462174 178462983 -18732449 + L1ME3 LINE L1 2731 3626 -2520 8 1946 210 91 0 0 chr1 178462983 178463016 -18732416 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 8 1946 1053 327 103 38 chr1 178463016 178463377 -18732055 + L1ME3 LINE L1 3627 3977 -2169 8 1946 266 342 71 55 chr1 178463502 178463615 -18731817 + MLT1D LTR MaLR 1 124 -381 8 1946 4024 51 13 4 chr1 178463615 178464086 -18731346 - MT2C_Mm LTR ERVL 0 475 1 8 1946 266 342 71 55 chr1 178464086 178464210 -18731222 + MLT1D LTR MaLR 125 242 -263 8 1946 248 264 144 59 chr1 178464228 178464381 -18731051 + MLT1D LTR MaLR 206 371 -19 8 1946 488 316 100 24 chr1 178464856 178465226 -18730206 + L1ME3 LINE L1 4287 4684 -1462 8 1946 264 59 0 0 chr1 178465339 178465373 -18730059 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 8 1946 2905 128 7 25 chr1 178465439 178465872 -18729560 + Lx4A LINE L1 6633 7057 -1 8 1946 21 57 0 0 chr1 178465872 178465907 -18729525 + AT_rich Low_complexity Low_complexity 1 35 0 8 1946 823 250 0 28 chr1 178465907 178466074 -18729358 + B3A SINE B2 1 163 -35 8 1946 509 0 16 0 chr1 178466074 178466135 -18729297 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1946 189 0 0 0 chr1 178466172 178466193 -18729239 + (TA)n Simple_repeat Simple_repeat 1 21 0 8 1946 522 303 100 69 chr1 178466399 178467108 -18728324 + L1ME3 LINE L1 5255 5985 -177 8 1946 325 309 55 0 chr1 178467431 178467541 -18727891 - PB1D10 SINE Alu 0 117 2 8 1946 470 304 98 64 chr1 178467606 178467909 -18727523 + RLTR12B LTR ERVK 13 322 -246 8 1946 1326 221 141 93 chr1 178468506 178468723 -18726709 - MT2A LTR ERVL -6 595 231 8 1946 219 0 45 68 chr1 178468723 178468767 -18726665 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1946 1187 65 0 0 chr1 178468767 178468905 -18726527 - B1_Mus2 SINE Alu -9 138 1 8 1946 1326 213 154 92 chr1 178468905 178469155 -18726277 - MT2A LTR ERVL -303 230 3 8 1946 956 169 0 0 chr1 178469387 178469529 -18725903 + B1_Mur3 SINE Alu 1 142 -7 8 1946 578 285 152 0 chr1 178469592 178469750 -18725682 - B3A SINE B2 -16 182 1 8 1946 511 332 112 35 chr1 178469825 178470262 -18725170 + Charlie25 DNA MER1_type 379 880 -1644 8 1946 492 18 0 0 chr1 178470262 178470319 -18725113 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1946 511 347 96 49 chr1 178470319 178470621 -18724811 + Charlie25 DNA MER1_type 881 1184 -1340 8 1946 283 392 11 16 chr1 178470923 178471112 -18724320 + Charlie25 DNA MER1_type 1587 1774 -750 8 1946 11143 12 0 0 chr1 178471253 178473213 -18722219 - L1Md_T LINE L1 0 6585 4626 8 1946 3074 36 0 0 chr1 178473214 178473551 -18721881 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 1946 56220 23 18 7 chr1 178473551 178479956 -18715476 - IAPEz-int LTR ERVK 0 6481 8 8 1946 3074 36 0 0 chr1 178479956 178480293 -18715139 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 1946 27732 39 0 0 chr1 178480293 178484765 -18710667 - L1Md_T LINE L1 -1256 4630 62 8 1946 7933 111 4 7 chr1 178485078 178486900 -18708532 + Lx LINE L1 4835 6652 -2 8 1946 22 0 0 0 chr1 178486995 178487017 -18708415 + AT_rich Low_complexity Low_complexity 1 22 0 8 1946 427 328 99 95 chr1 178487686 178487969 -18707463 + B4A SINE B4 3 286 -6 8 1946 685 281 174 46 chr1 178489317 178489709 -18705723 - MLT1C LTR MaLR -25 442 1 8 1946 341 338 28 0 chr1 178490142 178490284 -18705148 - MER2 DNA MER2_type -55 290 145 8 1946 856 276 179 19 chr1 178490285 178490610 -18704822 - MTEb LTR MaLR -2 377 1 8 1946 1318 278 101 42 chr1 178490630 178491158 -18704274 - MTEb-int LTR MaLR -18 1562 846 8 1946 2272 178 37 10 chr1 178491146 178491548 -18703884 - MTC LTR MaLR -8 413 1 8 1946 2466 272 134 55 chr1 178491548 178492464 -18702968 - MTE-int LTR MaLR -591 989 1 8 1946 1415 88 0 33 chr1 178492468 178492680 -18702752 - Lx LINE L1 -6 6648 6444 8 1946 3063 47 0 8 chr1 178492995 178493362 -18702070 - L1Md_F2 LINE L1 -4 6578 6215 8 1946 768 301 116 7 chr1 178493379 178493673 -18701759 - MTE2b LTR MaLR -53 326 1 8 1946 253 143 53 171 chr1 178493674 178493750 -18701682 - MER2 DNA MER2_type -196 149 83 8 1946 27 0 0 0 chr1 178493750 178493777 -18701655 + AT_rich Low_complexity Low_complexity 1 27 0 8 1946 263 317 48 19 chr1 178493833 178493936 -18701496 + MamRep605 Unknown Unknown 545 650 -226 8 1946 458 274 96 56 chr1 178494247 178494425 -18701007 - MER20 DNA MER1_type -31 188 4 8 1946 230 29 0 56 chr1 178494461 178494497 -18700935 + (CATAT)n Simple_repeat Simple_repeat 3 36 0 8 1946 428 0 19 0 chr1 178494780 178494832 -18700600 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1946 265 376 99 17 chr1 178495106 178495287 -18700145 + ORR1E LTR MaLR 5 200 -159 8 1946 659 276 22 79 chr1 178495310 178495538 -18699894 + MTEb LTR MaLR 1 215 -164 8 1946 1025 246 80 21 chr1 178495568 178495905 -18699527 - L1M3 LINE L1 -400 5789 5433 8 1946 360 156 0 15 chr1 178496061 178496138 -18699294 - L1M3 LINE L1 -985 5318 5237 8 1946 681 47 0 0 chr1 178496260 178496345 -18699087 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 8 1946 869 246 56 32 chr1 178497813 178498132 -18697300 + RMER10A LTR ERVL 77 426 -16 8 1946 1845 150 140 6 chr1 178498137 178498472 -18696960 + ORR1C2 LTR MaLR 5 384 0 8 1946 195 72 0 67 chr1 178499847 178499892 -18695540 + (TAA)n Simple_repeat Simple_repeat 2 43 0 8 1946 283 260 65 118 chr1 178500072 178500242 -18695190 + RMER15 LTR ERVL 1 161 -414 1 1946 648 317 62 18 chr1 178500235 178500511 -18694921 + RMER15 LTR ERVL 274 561 -14 1 1946 217 278 0 27 chr1 178501019 178501093 -18694339 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 2 1946 255 245 168 9 chr1 178501725 178501832 -18693600 + MIRc SINE MIR 27 150 -118 3 1946 470 129 12 0 chr1 178501964 178502049 -18693383 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 4 1946 410 165 24 142 chr1 178502924 178503051 -18692381 + MT2B LTR ERVL 153 264 -337 5 1946 1040 63 0 14 chr1 178502944 178503088 -18692344 + B1_Mus2 SINE Alu 6 147 0 6 1946 561 68 0 0 chr1 178503090 178503164 -18692268 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 7 1946 418 367 48 0 chr1 178504852 178505040 -18690392 + ERVL-E-int LTR ERVL 2630 2867 -2129 8 1946 450 353 116 29 chr1 178505257 178505706 -18689726 + ERVL-E-int LTR ERVL 3176 3663 -2004 8 1946 497 306 13 84 chr1 178505869 178505894 -18689538 + MTD LTR MaLR 1 28 -379 9 1946 441 0 0 0 chr1 178505894 178505943 -18689489 + (TAG)n Simple_repeat Simple_repeat 3 51 0 1 1946 943 251 1 18 chr1 178505943 178506173 -18689259 + MTD LTR MaLR 28 232 -164 9 1946 840 180 86 16 chr1 178506377 178506563 -18688869 + MTD LTR MaLR 213 411 -8 9 1946 537 238 130 19 chr1 178506853 178507007 -18688425 - ORR1B1 LTR MaLR 0 379 209 1 1946 250 325 64 132 chr1 178507048 178507328 -18688104 - ORR1E LTR MaLR -22 337 77 1 1946 489 279 102 56 chr1 178507474 178507740 -18687692 + MLT1B LTR MaLR 113 390 0 1 1946 273 286 0 28 chr1 178508814 178508886 -18686546 + B4 SINE B4 4 73 -219 1 1946 2940 46 57 0 chr1 178508888 178509257 -18686175 - RLTR10 LTR ERVK 0 390 1 1 1946 8991 14 1 3 chr1 178509259 178510256 -18685176 - RLTR10-int LTR ERVK -3 1984 990 1 1946 7682 39 4 1 chr1 178510350 178511260 -18684172 - RLTR10-int LTR ERVK -1034 953 41 1 1946 2927 49 57 0 chr1 178511270 178511639 -18683793 - RLTR10 LTR ERVK 0 390 1 1 1946 984 82 0 0 chr1 178511650 178511785 -18683647 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 1 1946 587 108 0 11 chr1 178511785 178511879 -18683553 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 1 1946 723 255 0 56 chr1 178511879 178512074 -18683358 + B4 SINE B4 82 265 -27 1 1946 231 114 0 0 chr1 178512080 178512124 -18683308 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1946 1480 251 22 0 chr1 178512578 178512937 -18682495 - MTEa LTR MaLR -12 367 1 1 1946 588 163 42 2 chr1 178513173 178513295 -18682137 - ORR1B1 LTR MaLR -235 159 41 1 1946 316 336 8 67 chr1 178513302 178513436 -18681996 + MTEa LTR MaLR 103 228 -151 2 1946 234 195 0 0 chr1 178513458 178513545 -18681887 + (CTATG)n Simple_repeat Simple_repeat 1 87 0 2 1946 237 284 15 0 chr1 178513549 178513616 -18681816 + MTEa LTR MaLR 272 339 -40 2 1946 183 100 0 0 chr1 178513648 178513678 -18681754 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 2 1946 2169 72 123 0 chr1 178513696 178514014 -18681418 - IAPEY2_LTR LTR ERVK 0 357 1 2 1946 11685 111 3 15 chr1 178514014 178515718 -18679714 - IAPEy-int LTR ERVK 0 7513 5829 2 1946 9873 113 19 8 chr1 178515705 178517150 -18678282 - IAPEY3-int LTR ERVK -6219 1461 1 2 1946 2080 97 19 0 chr1 178517150 178517469 -18677963 - IAPEY2_LTR LTR ERVK 0 357 33 2 1946 309 280 103 0 chr1 178517737 178517844 -18677588 - MLT2B2 LTR ERVL 0 562 445 2 1946 579 266 98 0 chr1 178517958 178518101 -18677331 + RSINE1 SINE B4 3 159 -6 2 1946 315 0 0 0 chr1 178518152 178518187 -18677245 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1946 266 234 148 9 chr1 178518219 178518327 -18677105 - ERVL-E-int LTR ERVL -3374 2293 2171 2 1946 226 303 281 28 chr1 178518397 178518614 -18676818 - LTR16A LTR ERVL -158 293 22 2 1947 242 279 0 16 chr1 178521227 178521289 -18674143 + CT-rich Low_complexity Low_complexity 2 62 0 3 1947 341 275 77 0 chr1 178521317 178521408 -18674024 + PB1D10 SINE Alu 6 103 -14 3 1947 257 0 30 0 chr1 178521410 178521443 -18673989 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1947 1665 280 59 6 chr1 178521533 178522039 -18673393 - MT2A LTR ERVL 0 533 1 3 1947 1214 263 13 89 chr1 178522069 178522462 -18672970 - MTE2a LTR MaLR -9 370 8 3 1947 828 84 0 0 chr1 178522598 178522729 -18672703 + (TG)n Simple_repeat Simple_repeat 2 132 0 3 1947 201 300 0 62 chr1 178522752 178522848 -18672584 + (TATATG)n Simple_repeat Simple_repeat 3 92 0 3 1947 902 219 105 43 chr1 178522849 178523106 -18672326 - B4 SINE B4 -19 273 1 3 1947 639 318 87 43 chr1 178523194 178523677 -18671755 + Charlie1b DNA MER1_type 19 522 -1 3 1947 336 24 0 0 chr1 178523961 178524002 -18671430 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1947 441 0 0 0 chr1 178524002 178524050 -18671382 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1947 258 331 97 24 chr1 178525140 178525373 -18670059 - MLT1E1A LTR MaLR -6 618 364 4 1947 1403 259 60 0 chr1 178525581 178525933 -18669499 + MTE2b LTR MaLR 7 379 0 4 1947 248 320 61 20 chr1 178526055 178526154 -18669278 - MLT1E1A-int LTR MaLR -4 1485 1383 4 1947 1002 150 32 43 chr1 178526206 178526394 -18669038 - B2_Mm2 SINE B2 -8 187 2 4 1947 305 209 0 15 chr1 178526412 178526480 -18668952 + MLT1A0 LTR MaLR 1 67 -298 4 1947 539 301 61 72 chr1 178526499 178526792 -18668640 + B4 SINE B4 3 292 0 4 1947 360 256 0 0 chr1 178526833 178526962 -18668470 + (CA)n Simple_repeat Simple_repeat 2 130 0 4 1947 695 248 131 0 chr1 178526986 178527200 -18668232 + MLT1A0 LTR MaLR 72 313 -52 4 1947 648 281 98 28 chr1 178527208 178527534 -18667898 - ORR1E LTR MaLR -7 352 4 4 1947 306 176 30 7 chr1 178528233 178528316 -18667116 - Lx2 LINE L1 0 7058 6935 4 1947 350 300 337 59 chr1 178528671 178529134 -18666298 + MER77 LTR ERVL 1 591 -16 4 1947 510 295 5 64 chr1 178530369 178530572 -18664860 + B3A SINE B2 8 198 0 5 1947 405 264 57 89 chr1 178531464 178531523 -18663909 + RMER1B Other Other 1 56 -1010 5 1947 1758 124 151 48 chr1 178531523 178531716 -18663716 + RMER17C LTR ERVK 1 211 -199 5 1947 669 47 0 0 chr1 178531716 178531801 -18663631 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1947 1758 124 151 48 chr1 178531801 178531979 -18663453 + RMER17C LTR ERVK 212 410 0 5 1947 405 264 57 89 chr1 178531979 178532077 -18663355 + RMER1B Other Other 57 153 -913 5 1947 604 282 109 9 chr1 178532408 178532619 -18662813 + RMER1B Other Other 163 394 -672 5 1947 1018 229 24 75 chr1 178532620 178532875 -18662557 + RMER1C Other Other 1083 1324 -18 5 1947 254 310 140 13 chr1 178533829 178533986 -18661446 - Charlie19a DNA Charlie -155 231 55 5 1947 959 158 5 16 chr1 178534534 178534720 -18660712 + URR1B DNA MER1_type 36 219 -6 5 1947 209 152 0 80 chr1 178535412 178535462 -18659970 + (CAATA)n Simple_repeat Simple_repeat 1 46 0 5 1947 22 0 0 0 chr1 178535839 178535861 -18659571 + AT_rich Low_complexity Low_complexity 1 22 0 5 1947 3839 197 77 38 chr1 178535970 178536544 -18658888 - RLTR25A LTR ERVK 0 1103 515 5 1947 555 16 0 0 chr1 178536544 178536608 -18658824 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1947 3839 197 77 38 chr1 178536608 178537085 -18658347 - RLTR25A LTR ERVK -589 514 12 5 1947 2975 93 103 10 chr1 178537326 178537813 -18657619 + RLTR47_MM LTR ERV1 1 532 0 6 1947 702 270 42 0 chr1 178538092 178538281 -18657151 + RMER30 DNA MER1_type 5 201 -1 6 1947 1567 172 7 17 chr1 178538542 178538837 -18656595 - RLTR41 LTR ERV1 -14 432 141 6 1947 21 0 0 0 chr1 178539142 178539163 -18656269 + AT_rich Low_complexity Low_complexity 1 21 0 6 1947 1144 286 39 32 chr1 178539345 178539808 -18655624 + L1M4 LINE L1 3268 3733 -2413 6 1947 579 216 43 54 chr1 178539813 178539999 -18655433 + L1M4 LINE L1 3873 4056 -2084 6 1947 464 253 131 20 chr1 178540012 178540210 -18655222 - Lx8 LINE L1 -6 7467 7248 6 1947 351 0 0 0 chr1 178540375 178540414 -18655018 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1947 635 239 112 0 chr1 178540521 178540709 -18654723 - B3 SINE B2 -7 209 1 6 1947 242 337 20 10 chr1 178541609 178541711 -18653721 - MIR SINE MIR -100 162 60 6 1947 904 110 103 6 chr1 178541911 178542076 -18653356 + URR1A DNA MER1_type 46 226 0 6 1947 336 234 139 35 chr1 178541922 178542095 -18653337 - CYRA11_Mm Unknown Y-chromosome -280 337 147 7 1947 294 239 14 14 chr1 178542148 178542220 -18653212 + CT-rich Low_complexity Low_complexity 1 72 0 7 1947 802 226 59 5 chr1 178542221 178542408 -18653024 - ID_B1 SINE B4 -13 211 15 7 1947 598 220 21 14 chr1 178542414 178542557 -18652875 - MLT1D LTR MaLR -322 183 40 7 1947 680 245 20 0 chr1 178542854 178543001 -18652431 - ID_B1 SINE B4 -6 218 69 7 1947 1000 174 14 14 chr1 178544424 178544640 -18650792 + URR1B DNA MER1_type 10 225 0 7 1947 248 0 31 0 chr1 178545508 178545540 -18649892 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 1947 278 246 0 15 chr1 178546269 178546335 -18649097 + C-rich Low_complexity Low_complexity 3 67 0 7 1947 281 309 51 17 chr1 178546502 178546680 -18648752 - MER45B DNA Tip100 -243 797 614 7 1947 596 251 51 19 chr1 178546890 178547079 -18648353 + MTEa LTR MaLR 11 207 -172 7 1947 734 262 81 33 chr1 178547187 178547459 -18647973 - B4A SINE B4 0 292 8 8 1947 245 217 67 0 chr1 178547470 178547530 -18647902 + MTEa LTR MaLR 314 377 -2 7 1947 268 311 66 16 chr1 178547782 178547903 -18647529 - ORR1E LTR MaLR -224 135 9 8 1947 466 254 39 17 chr1 178548002 178548119 -18647313 + RSINE1 SINE B4 5 128 -37 8 1947 647 35 24 0 chr1 178548139 178548224 -18647208 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 8 1947 27 29 0 0 chr1 178548226 178548260 -18647172 + AT_rich Low_complexity Low_complexity 1 34 0 8 1947 959 254 42 31 chr1 178548372 178548660 -18646772 - B4A SINE B4 0 292 2 8 1947 333 0 0 0 chr1 178549364 178549401 -18646031 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1947 415 312 106 142 chr1 178549471 178549872 -18645560 - MT2A LTR ERVL 0 533 23 8 1947 452 291 16 16 chr1 178549872 178550001 -18645431 - MTE2b LTR MaLR -228 151 23 8 1947 186 363 11 32 chr1 178550552 178550646 -18644786 - L2b LINE L2 -2 3373 3282 8 1947 648 122 0 82 chr1 178551871 178552067 -18643365 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1947 563 298 34 43 chr1 178552176 178552383 -18643049 + B4 SINE B4 16 220 -72 9 1947 854 185 0 11 chr1 178554598 178554778 -18640654 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 9 1947 397 286 29 0 chr1 178554799 178554904 -18640528 - B3 SINE B2 -105 111 4 9 1947 264 213 179 11 chr1 178555786 178555881 -18639551 + MER47B DNA MER2_type 138 248 -170 9 1947 558 301 7 7 chr1 178556358 178556502 -18638930 - RSINE1 SINE B4 -2 163 20 9 1947 483 281 96 72 chr1 178557771 178558105 -18637327 + LTR73 LTR ERV1 175 516 -56 9 1947 269 230 224 28 chr1 178558298 178558477 -18636955 - MER63D DNA AcHobo -811 250 37 9 1947 450 0 0 0 chr1 178559302 178559352 -18636080 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 9 1947 510 243 91 39 chr1 178559430 178559584 -18635848 + RSINE1 SINE B4 4 165 0 9 1947 8122 210 42 88 chr1 178559827 178561180 -18634252 - Lx7 LINE L1 0 7696 6458 1 1947 3649 96 24 47 chr1 178561180 178561757 -18633675 + LTRIS2 LTR ERV1 1 564 0 1 1947 8122 168 81 65 chr1 178561757 178562949 -18632483 - Lx7 LINE L1 -1239 6457 5193 1 1947 180 0 0 0 chr1 178562949 178562969 -18632463 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1947 5101 131 114 44 chr1 178562969 178563336 -18632096 - Lx7 LINE L1 -688 5192 4795 1 1947 490 193 184 0 chr1 178563393 178563502 -18631930 - MTD LTR MaLR -290 129 1 1 1947 633 27 0 0 chr1 178563530 178563605 -18631827 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1947 186 231 0 0 chr1 178564001 178564040 -18631392 - L2b LINE L2 -49 3326 3288 1 1947 3925 75 2 30 chr1 178564842 178565377 -18630055 - L1_Mus2 LINE L1 0 6566 6047 1 1947 1163 257 81 14 chr1 178565591 178565938 -18629494 - MTE2a LTR MaLR -4 375 6 1 1947 474 65 0 0 chr1 178566001 178566063 -18629369 + (TGG)n Simple_repeat Simple_repeat 1 62 0 1 1947 374 235 7 83 chr1 178566070 178566214 -18629218 - MIR SINE MIR -21 241 109 1 1947 185 287 106 0 chr1 178567133 178567227 -18628205 - MIRc SINE MIR -128 140 37 1 1947 311 241 35 35 chr1 178568135 178568221 -18627211 - ORR1E LTR MaLR -1 378 293 1 1947 1137 199 196 12 chr1 178568247 178568401 -18627031 + RMER17C LTR ERVK 1 195 -215 1 1947 605 38 12 0 chr1 178568401 178568481 -18626951 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1947 1137 199 196 12 chr1 178568481 178568672 -18626760 + RMER17C LTR ERVK 196 409 -1 1 1947 2173 112 16 6 chr1 178568765 178569079 -18626353 - Lx4A LINE L1 -228 6830 6514 1 1947 376 242 77 0 chr1 178569080 178569171 -18626261 + RMER13B LTR ERVK 358 455 -453 1 1947 2164 98 0 7 chr1 178569171 178569469 -18625963 - Lx4A LINE L1 -576 6482 6187 1 1947 502 124 10 10 chr1 178569472 178569570 -18625862 + Lx4A LINE L1 6959 7056 -2 1 1947 198 0 0 0 chr1 178569570 178569592 -18625840 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 1 1947 456 200 99 9 chr1 178569608 178569719 -18625713 - ORR1E LTR MaLR -237 122 2 1 1947 255 61 0 0 chr1 178570149 178570182 -18625250 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 1 1947 464 0 0 18 chr1 178572090 178572147 -18623285 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1947 972 227 0 0 chr1 178573334 178573528 -18621904 + B3 SINE B2 1 194 -22 1 1947 259 250 0 27 chr1 178574734 178574808 -18620624 + B4A SINE B4 1 72 -220 1 1947 369 0 0 0 chr1 178575747 178575788 -18619644 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1947 223 313 15 0 chr1 178575805 178575872 -18619560 - PB1D10 SINE Alu -49 68 1 1 1947 751 41 0 0 chr1 178576053 178576151 -18619281 + B1_Mus2 SINE Alu 50 147 0 1 1947 468 200 19 99 chr1 178576160 178576321 -18619111 - L1MB7 LINE L1 -19 6159 6012 1 1947 524 284 70 23 chr1 178576660 178576916 -18618516 - L1MB7 LINE L1 -183 6001 5734 1 1947 914 265 172 11 chr1 178576943 178577321 -18618111 - L1MB7 LINE L1 -1548 4598 4160 1 1947 1095 242 105 25 chr1 178577358 178577795 -18617637 - L1MB7 LINE L1 -2127 4019 3548 1 1947 551 286 65 50 chr1 178578667 178578778 -18616654 - MT2A LTR ERVL -102 431 317 1 1947 4773 101 121 33 chr1 178578778 178579594 -18615838 + RMER17D LTR ERVK 1 888 -1 1 1947 551 286 65 50 chr1 178579594 178579681 -18615751 - MT2A LTR ERVL -217 316 230 1 1947 264 372 81 16 chr1 178579706 178579812 -18615620 - MT2A LTR ERVL -271 262 1 1 1947 375 308 93 50 chr1 178579812 178579952 -18615480 - MTEa LTR MaLR -233 146 1 1 1947 7363 15 0 0 chr1 178579952 178580776 -18614656 + L1Md_T LINE L1 4763 5586 -297 1 1947 9171 5 0 0 chr1 178580776 178581804 -18613628 + L1Md_T LINE L1 5587 6582 0 1 1947 1601 195 100 15 chr1 178581971 178582361 -18613071 - RMER13A LTR ERVK -437 423 1 1 1947 356 367 42 23 chr1 178582361 178582551 -18612881 + RMER13A LTR ERVK 632 825 -35 1 1947 939 217 0 21 chr1 178582581 178582774 -18612658 + Lx9 LINE L1 6732 6920 -724 1 1947 1900 230 60 0 chr1 178582758 178583171 -18612261 + Lx9 LINE L1 7033 7470 -174 1 1947 180 111 0 0 chr1 178583171 178583198 -18612234 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 1 1947 273 196 46 56 chr1 178583198 178583306 -18612126 + Lx9 LINE L1 7521 7627 -17 1 1947 547 15 127 0 chr1 178583313 178583572 -18611860 + (TA)n Simple_repeat Simple_repeat 1 291 0 1 1947 234 62 0 0 chr1 178584158 178584190 -18611242 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1947 198 282 25 13 chr1 178584658 178584737 -18610695 + L2b LINE L2 3063 3142 -233 1 1947 306 0 0 0 chr1 178585245 178585279 -18610153 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1947 258 32 0 0 chr1 178586505 178586536 -18608896 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1947 214 167 48 0 chr1 178587446 178587488 -18607944 + A-rich Low_complexity Low_complexity 3 46 0 1 1947 302 254 88 44 chr1 178587894 178588030 -18607402 + L1MCc LINE L1 98 239 -6184 1 1947 434 33 0 16 chr1 178588258 178588319 -18607113 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 1 1947 576 0 0 0 chr1 178588732 178588796 -18606636 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1947 22 26 0 25 chr1 178588831 178588854 -18606578 + AT_rich Low_complexity Low_complexity 1 23 0 1 1947 722 244 54 22 chr1 178588854 178589038 -18606394 + B3A SINE B2 1 190 -8 1 1947 22 26 0 25 chr1 178589038 178589054 -18606378 + AT_rich Low_complexity Low_complexity 1 16 0 1 1947 3146 80 2 0 chr1 178589125 178589524 -18605908 + MTB LTR MaLR 1 400 0 1 1947 203 279 40 61 chr1 178590230 178590329 -18605103 - MIR SINE MIR -48 214 118 1 1947 648 315 55 71 chr1 178591199 178591509 -18603923 - L1_Mm LINE L1 -245 5638 5336 1 1947 396 0 0 0 chr1 178591510 178591554 -18603878 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 1 1947 266 164 0 0 chr1 178591683 178591738 -18603694 - L1_Mm LINE L1 -805 5359 5305 1 1947 186 0 88 0 chr1 178591849 178591883 -18603549 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1947 306 0 0 0 chr1 178591883 178591916 -18603516 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1947 183 156 0 0 chr1 178592282 178592314 -18603118 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 1 1947 1941 178 53 5 chr1 178592314 178592692 -18602740 - MERVL_2A-int LTR ERVL -4476 1285 890 1 1947 241 175 48 0 chr1 178592923 178592986 -18602446 + T-rich Low_complexity Low_complexity 5 70 0 1 1947 369 174 0 0 chr1 178593506 178593575 -18601857 + G-rich Low_complexity Low_complexity 1 69 0 1 1947 1953 141 26 14 chr1 178594223 178594575 -18600857 - ORR1B2 LTR MaLR -8 359 4 1 1947 23 0 0 0 chr1 178594624 178594647 -18600785 + AT_rich Low_complexity Low_complexity 1 23 0 1 1947 210 303 207 21 chr1 178595500 178595645 -18599787 + MIR SINE MIR 20 191 -71 1 1947 416 210 0 80 chr1 178595708 178595796 -18599636 + B4 SINE B4 125 205 -87 1 1947 4558 148 77 71 chr1 178595933 178596830 -18598602 + RMER19B LTR ERVK 1 902 0 1 1947 215 232 55 55 chr1 178596979 178597052 -18598380 + MIR3 SINE MIR 115 187 -21 1 1947 381 333 8 30 chr1 178599138 178599271 -18596161 + RSINE1 SINE B4 21 150 -15 1 1947 255 355 64 0 chr1 178599481 178599591 -18595841 - ORR1E LTR MaLR -239 120 4 1 1947 444 100 74 18 chr1 178600334 178600497 -18594935 + (TA)n Simple_repeat Simple_repeat 2 173 0 1 1947 22 0 0 0 chr1 178600844 178600866 -18594566 + AT_rich Low_complexity Low_complexity 1 22 0 1 1947 206 335 14 9 chr1 178601011 178601133 -18594299 + MIRm SINE MIR 19 145 -131 1 1947 2300 142 116 5 chr1 178601847 178602244 -18593188 - BGLII_B LTR ERVK 0 441 1 1 1947 249 244 36 24 chr1 178602984 178603068 -18592364 + MTEb LTR MaLR 289 373 -6 1 1947 513 0 0 0 chr1 178603178 178603235 -18592197 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1947 415 291 8 0 chr1 178603238 178603355 -18592077 - B3A SINE B2 -80 118 1 1 1947 712 258 44 132 chr1 178603779 178604096 -18591336 + B4A SINE B4 4 292 0 1 1947 771 233 178 10 chr1 178606011 178606219 -18589213 + B4A SINE B4 41 283 -9 1 1947 2606 74 9 0 chr1 178606278 178606602 -18588830 - ORR1A2 LTR MaLR 0 327 1 1 1947 319 326 87 33 chr1 178606654 178606838 -18588594 + MLT1K LTR MaLR 386 579 -16 1 1947 216 0 0 0 chr1 178607188 178607212 -18588220 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1947 512 242 0 53 chr1 178608050 178608181 -18587251 - MTEb LTR MaLR 0 379 256 1 1947 408 312 8 0 chr1 178608215 178608343 -18587089 - MTEb LTR MaLR -230 129 1 1 1947 219 296 124 36 chr1 178608391 178608589 -18586843 - MIRm SINE MIR -26 242 19 1 1947 1256 41 147 6 chr1 178608589 178608615 -18586817 - B2_Mm2 SINE B2 0 195 170 1 1947 518 0 16 0 chr1 178608615 178608677 -18586755 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 1 1947 1256 41 147 6 chr1 178608677 178608820 -18586612 - B2_Mm2 SINE B2 -26 169 3 1 1947 219 294 80 48 chr1 178608820 178608835 -18586597 - MIRm SINE MIR -258 18 4 1 1947 405 0 0 0 chr1 178609455 178609500 -18585932 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1947 3321 28 10 2 chr1 178609569 178609962 -18585470 + MTA_Mm LTR MaLR 1 396 0 1 1947 303 28 0 0 chr1 178610205 178610241 -18585191 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1947 434 301 118 11 chr1 178610299 178610477 -18584955 + MLT1E3 LTR MaLR 349 545 -79 1 1947 270 0 0 0 chr1 178610477 178610507 -18584925 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1947 2081 24 16 4 chr1 178610642 178610890 -18584542 + L1Md_F3 LINE L1 6334 6584 0 1 1947 306 0 0 0 chr1 178613680 178613714 -18581718 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1947 229 302 0 16 chr1 178613799 178613863 -18581569 + GA-rich Low_complexity Low_complexity 2 64 0 1 1947 766 155 0 7 chr1 178613961 178614104 -18581328 + B1_Mur1 SINE Alu 6 147 -2 1 1947 496 301 117 43 chr1 178614623 178615016 -18580416 - LTR37B LTR ERV1 0 468 47 1 1947 879 249 14 14 chr1 178615027 178615247 -18580185 - ID_B1 SINE B4 0 224 5 1 1947 538 280 0 8 chr1 178616513 178616646 -18578786 - RSINE1 SINE B4 -31 134 3 1 1947 213 259 17 0 chr1 178617466 178617524 -18577908 + L2c LINE L2 3286 3344 -43 1 1947 287 213 53 0 chr1 178618244 178618319 -18577113 - ID4 SINE ID -3 80 2 1 1947 441 0 0 0 chr1 178618336 178618385 -18577047 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1947 315 0 0 0 chr1 178618385 178618419 -18577013 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1947 678 233 75 55 chr1 178618442 178618642 -18576790 - B4 SINE B4 -6 286 83 1 1947 466 196 0 23 chr1 178618666 178618777 -18576655 - B1_Mur1 SINE Alu -8 141 39 1 1947 563 352 24 43 chr1 178619079 178619408 -18576024 + Lx8 LINE L1 7144 7466 -7 1 1947 205 146 20 20 chr1 178619420 178619469 -18575963 + A-rich Low_complexity Low_complexity 2 50 0 2 1947 621 273 0 0 chr1 178619734 178619877 -18575555 + ID_B1 SINE B4 82 224 0 2 1947 198 0 0 0 chr1 178620011 178620033 -18575399 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1947 232 335 98 55 chr1 178620193 178620357 -18575075 - ORR1E LTR MaLR -170 189 19 2 1947 625 281 40 12 chr1 178620658 178620910 -18574522 + L5 LINE RTE 1992 2250 -15 2 1947 1235 88 55 11 chr1 178620980 178621163 -18574269 + B2_Mm1t SINE B2 2 192 -1 2 1947 1051 167 22 26 chr1 178621399 178621627 -18573805 + RLTR16 LTR ERVK 278 504 -1 2 1947 392 243 149 35 chr1 178621657 178621787 -18573645 + B4A SINE B4 135 282 -10 2 1947 237 128 0 0 chr1 178621787 178621834 -18573598 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1947 733 249 371 14 chr1 178621901 178622193 -18573239 + MTD LTR MaLR 10 405 -14 2 1947 2245 94 3 0 chr1 178622248 178622566 -18572866 + ORR1A2 LTR MaLR 1 319 -8 2 1947 1689 115 4 0 chr1 178622955 178623207 -18572225 + ORR1A2 LTR MaLR 1 253 -74 2 1947 706 308 37 41 chr1 178623211 178623482 -18571950 - B4A SINE B4 -22 270 1 2 1947 259 169 194 14 chr1 178624371 178624443 -18570989 + PB1D10 SINE Alu 1 85 -32 2 1947 295 147 25 51 chr1 178624687 178624766 -18570666 + B3 SINE B2 140 216 0 2 1947 381 22 0 0 chr1 178625020 178625066 -18570366 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1947 341 164 0 14 chr1 178625066 178625140 -18570292 + GA-rich Low_complexity Low_complexity 4 76 0 2 1947 195 69 0 0 chr1 178625546 178625575 -18569857 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 2 1947 309 117 0 0 chr1 178625983 178626043 -18569389 + (TCTG)n Simple_repeat Simple_repeat 4 63 0 2 1947 563 262 85 26 chr1 178627029 178627182 -18568250 - 7SK RNA RNA -99 232 71 2 1947 393 220 60 0 chr1 178627179 178627279 -18568153 - ORR1E LTR MaLR -253 106 1 2 1947 573 114 0 0 chr1 178628257 178628362 -18567070 + (TC)n Simple_repeat Simple_repeat 1 105 0 2 1947 438 20 0 0 chr1 178628362 178628413 -18567019 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1947 198 128 0 0 chr1 178629375 178629414 -18566018 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1947 235 383 7 28 chr1 178629457 178629602 -18565830 - LTR33 LTR ERVL -337 178 37 2 1947 245 333 0 0 chr1 178629695 178629764 -18565668 - ID4 SINE ID -13 70 2 2 1947 194 401 40 27 chr1 178629952 178630175 -18565257 + L3 LINE CR1 4219 4444 -45 2 1947 657 47 0 0 chr1 178630747 178630833 -18564599 + U6 snRNA snRNA 1 86 -21 2 1947 6505 58 0 10 chr1 178630833 178631653 -18563779 + L1Md_F2 LINE L1 5758 6569 -13 2 1947 770 183 108 27 chr1 178631660 178631845 -18563587 + RMER4B LTR ERVK 46 245 -340 2 1947 333 118 0 0 chr1 178631869 178631920 -18563512 + (GGA)n Simple_repeat Simple_repeat 3 53 0 2 1947 380 168 316 15 chr1 178631948 178632081 -18563351 + RMER4B LTR ERVK 335 507 -78 2 1947 1944 157 46 0 chr1 178632081 178632387 -18563045 + Lx5 LINE L1 6487 6806 -244 2 1947 937 296 98 45 chr1 178633143 178633674 -18561758 - Lx8 LINE L1 -1019 6454 5896 2 1947 1548 343 54 16 chr1 178633673 178634426 -18561006 + Lx8 LINE L1 6465 7246 -227 2 1947 227 238 47 16 chr1 178635716 178635780 -18559652 - MTC LTR MaLR -126 295 230 2 1947 635 225 128 6 chr1 178635775 178635954 -18559478 - MER57F LTR ERV1 -235 201 1 2 1947 1182 112 21 21 chr1 178636184 178636375 -18559057 + MTC LTR MaLR 1 191 -230 2 1947 228 200 0 20 chr1 178636747 178636798 -18558634 + MTC LTR MaLR 200 249 -172 2 1947 218 189 0 0 chr1 178637678 178637744 -18557688 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1947 512 228 89 0 chr1 178637744 178637867 -18557565 - RSINE1 SINE B4 0 165 32 2 1947 952 255 61 32 chr1 178638519 178638858 -18556574 - MTE2b LTR MaLR -32 347 18 2 1947 232 331 44 7 chr1 178639176 178639313 -18556119 - Lx6 LINE L1 -9 7451 7310 2 1947 2320 212 50 47 chr1 178639316 178639415 -18556017 - Lx7 LINE L1 -284 7412 7326 2 1947 225 0 0 0 chr1 178639415 178639440 -18555992 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1947 2320 212 50 47 chr1 178639440 178639506 -18555926 - Lx7 LINE L1 -371 7325 7264 2 1947 2740 110 27 61 chr1 178639506 178639951 -18555481 + RLTR23 LTR ERV1 1 430 0 2 1947 2320 212 50 47 chr1 178639951 178640343 -18555089 - Lx7 LINE L1 -433 7263 6852 2 1947 289 289 198 86 chr1 178641017 178641279 -18554153 - B4A SINE B4 0 292 2 2 1947 24 0 0 0 chr1 178641944 178641968 -18553464 + AT_rich Low_complexity Low_complexity 1 24 0 2 1947 225 274 31 10 chr1 178642004 178642100 -18553332 - Lx7 LINE L1 -19 7677 7580 2 1947 231 146 0 0 chr1 178642150 178642205 -18553227 + (T)n Simple_repeat Simple_repeat 1 55 0 2 1947 1291 20 0 0 chr1 178642205 178642352 -18553080 - B1_Mus2 SINE Alu 0 147 1 2 1947 614 260 58 42 chr1 178642651 178642840 -18552592 - B3A SINE B2 0 198 7 2 1947 180 111 0 0 chr1 178642906 178642933 -18552499 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1947 319 79 15 31 chr1 178643148 178643213 -18552219 + (TTTTTG)n Simple_repeat Simple_repeat 2 65 0 2 1947 800 143 0 0 chr1 178643247 178643373 -18552059 - B1_Mur4 SINE Alu -19 131 6 2 1947 344 313 153 5 chr1 178643742 178643938 -18551494 + L1MEc LINE L1 37 261 -6139 2 1947 414 0 0 0 chr1 178644028 178644074 -18551358 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1947 712 264 157 10 chr1 178644528 178644929 -18550503 + L1MEc LINE L1 558 1017 -5383 2 1947 425 307 42 14 chr1 178644976 178645118 -18550314 - RSINE1 SINE B4 -17 148 3 2 1947 577 288 135 5 chr1 178645135 178645543 -18549889 + L1MEc LINE L1 1016 1476 -4924 2 1947 426 191 110 8 chr1 178645548 178645690 -18549742 + Lx4B LINE L1 6887 7054 -4 2 1947 331 259 24 72 chr1 178645973 178646098 -18549334 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 2 1947 600 315 53 32 chr1 178646201 178646446 -18548986 - MLT2F LTR ERVL -55 608 359 2 1947 2048 168 79 72 chr1 178646446 178646915 -18548517 + RMER19C LTR ERVK 1 472 -139 2 1947 5774 59 31 9 chr1 178646915 178647662 -18547770 - L1_Mus3 LINE L1 -112 6526 5759 2 1947 495 112 0 81 chr1 178647677 178647695 -18547737 + RMER19C LTR ERVK 532 549 -62 2 1947 3080 76 5 9 chr1 178647695 178648118 -18547314 - BGLII LTR ERVK 0 421 1 2 1947 495 112 0 81 chr1 178648118 178648186 -18547246 + RMER19C LTR ERVK 550 611 0 2 1947 997 168 11 0 chr1 178648328 178648507 -18546925 + B2_Mm1t SINE B2 2 182 -11 2 1947 2956 61 147 102 chr1 178649298 178649788 -18545644 - RLTR1B LTR ERV1 0 512 1 2 1947 670 257 29 6 chr1 178650124 178650296 -18545136 + B4 SINE B4 1 176 -116 2 1948 403 325 17 0 chr1 178651537 178651654 -18543778 + PB1 SINE Alu 7 125 -2 2 1948 1101 101 0 16 chr1 178652174 178652356 -18543076 + (GGA)n Simple_repeat Simple_repeat 1 179 0 2 1948 1181 106 0 6 chr1 178652369 178652550 -18542882 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1948 506 168 19 0 chr1 178655232 178655339 -18540093 + (CACG)n Simple_repeat Simple_repeat 4 112 0 2 1948 301 227 57 0 chr1 178655342 178655430 -18540002 + RLTR23 LTR ERV1 338 430 0 2 1948 416 19 0 19 chr1 178656441 178656495 -18538937 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 1948 219 103 0 0 chr1 178656644 178656683 -18538749 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1948 642 262 114 91 chr1 178657007 178657368 -18538064 - MTE2a LTR MaLR -8 371 3 2 1948 305 290 179 0 chr1 178657454 178657599 -18537833 + L1M4 LINE L1 4891 5061 -1085 2 1948 535 232 211 25 chr1 178657672 178657951 -18537481 + L1MA9 LINE L1 5844 6174 -138 2 1948 309 294 92 0 chr1 178657966 178658075 -18537357 - MTEa LTR MaLR -1 378 260 2 1948 668 203 15 0 chr1 178659366 178659499 -18535933 + ID_B1 SINE B4 90 224 0 2 1948 4668 47 12 2 chr1 178659528 178660099 -18535333 + L1_Mus2 LINE L1 5737 6313 -253 2 1948 286 285 138 20 chr1 178660202 178660411 -18535021 - L1ME3 LINE L1 -258 5904 5672 2 1948 543 161 11 0 chr1 178660573 178660666 -18534766 - B1_Mur4 SINE Alu -21 129 36 2 1948 237 246 222 42 chr1 178660609 178660681 -18534751 - 4.5SRNA scRNA scRNA -8 86 2 2 1948 231 103 0 0 chr1 178661577 178661616 -18533816 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1948 1177 48 0 14 chr1 178661619 178661767 -18533665 - B1_Mm SINE Alu 0 147 2 2 1948 186 191 0 0 chr1 178663549 178663591 -18531841 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1948 207 186 0 0 chr1 178664999 178665042 -18530390 + A-rich Low_complexity Low_complexity 1 43 0 2 1948 269 312 13 0 chr1 178666640 178666717 -18528715 - ID4_ SINE ID -4 79 2 2 1948 2414 140 52 46 chr1 178667946 178668404 -18527028 + RLTR31_Mur LTR ERVK 1 461 -92 2 1948 269 351 0 0 chr1 178669743 178669820 -18525612 - B3A SINE B2 -121 77 1 2 1948 211 229 0 0 chr1 178670564 178670612 -18524820 + T-rich Low_complexity Low_complexity 1 48 0 2 1948 746 290 117 11 chr1 178671328 178671593 -18523839 - MER58B DNA MER1_type -1 340 48 2 1948 431 324 127 18 chr1 178671779 178671999 -18523433 + MER2 DNA MER2_type 102 345 0 2 1948 445 256 128 44 chr1 178673004 178673184 -18522248 + Charlie4a DNA MER1_type 27 221 -287 2 1948 315 264 165 30 chr1 178673239 178673403 -18522029 + Charlie4a DNA MER1_type 308 493 -15 2 1948 398 204 24 81 chr1 178673635 178673758 -18521674 - PB1D10 SINE Alu 0 117 2 2 1948 450 240 19 9 chr1 178674128 178674233 -18521199 - B3 SINE B2 -110 106 1 2 1948 317 277 62 21 chr1 178674414 178674510 -18520922 - L2a LINE L2 -16 3410 3311 2 1948 222 340 18 27 chr1 178674518 178674630 -18520802 - MIRb SINE MIR -39 229 119 2 1948 1543 147 11 43 chr1 178674952 178675230 -18520202 + RLTR28 LTR ERVL 1 269 -255 2 1948 570 262 56 0 chr1 178675291 178675417 -18520015 + ID_B1 SINE B4 85 217 -7 2 1948 234 196 59 0 chr1 178675372 178675423 -18520009 + PB1D9 SINE Alu 66 119 -1 2 1948 21 0 0 0 chr1 178676867 178676888 -18518544 + AT_rich Low_complexity Low_complexity 1 21 0 2 1948 1905 113 29 67 chr1 178678141 178678483 -18516949 + ORR1A4 LTR MaLR 1 329 0 2 1948 986 23 77 0 chr1 178678537 178678667 -18516765 + B1_Mus2 SINE Alu 1 140 -7 2 1948 224 179 47 12 chr1 178678913 178678998 -18516434 + (TTAAA)n Simple_repeat Simple_repeat 3 90 0 3 1948 236 282 42 68 chr1 178679282 178679400 -18516032 + PB1D10 SINE Alu 1 115 -2 3 1948 564 254 87 10 chr1 178679820 178680015 -18515417 - B3 SINE B2 -6 210 1 3 1948 22 94 0 0 chr1 178680292 178680356 -18515076 + AT_rich Low_complexity Low_complexity 1 64 0 3 1948 257 297 98 10 chr1 178681216 178681318 -18514114 + L2a LINE L2 3310 3420 -6 3 1948 555 246 16 8 chr1 178681660 178681783 -18513649 + MTEb LTR MaLR 1 124 -255 3 1948 22 70 0 0 chr1 178681910 178681953 -18513479 + AT_rich Low_complexity Low_complexity 1 43 0 3 1948 331 287 53 0 chr1 178682805 178682899 -18512533 - B1F SINE Alu -11 138 40 3 1948 181 158 105 0 chr1 178684213 178684251 -18511181 - L3 LINE CR1 -2449 2040 1999 3 1948 2274 85 6 0 chr1 178687316 178687633 -18507799 + ORR1A2 LTR MaLR 1 319 -8 3 1948 312 27 0 0 chr1 178688449 178688486 -18506946 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 3 1948 1406 85 11 0 chr1 178689112 178689301 -18506131 + B2_Mm2 SINE B2 2 192 -3 3 1948 296 244 49 37 chr1 178689545 178689626 -18505806 + ID2 SINE ID 1 82 -1 3 1948 426 285 239 10 chr1 178690510 178690743 -18504689 + B4A SINE B4 3 291 -1 3 1948 421 239 35 35 chr1 178693474 178693587 -18501845 - PB1D7 SINE Alu -7 113 1 3 1948 234 0 0 0 chr1 178694607 178694633 -18500799 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1948 749 149 239 11 chr1 178695738 178695914 -18499518 - B3 SINE B2 0 216 1 3 1948 926 268 90 19 chr1 178695933 178696309 -18499123 + L1MB5 LINE L1 5702 6104 -70 3 1948 309 219 0 0 chr1 178696646 178696719 -18498713 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1948 34 24 0 0 chr1 178698182 178698223 -18497209 + AT_rich Low_complexity Low_complexity 1 41 0 3 1948 1315 168 145 28 chr1 178700370 178700695 -18494737 + Lx9 LINE L1 7281 7643 -1 3 1948 1872 122 24 60 chr1 178701057 178701388 -18494044 + ORR1A2 LTR MaLR 1 319 -8 3 1948 558 0 0 0 chr1 178702550 178702612 -18492820 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1948 686 224 178 6 chr1 178703138 178703318 -18492114 - B3 SINE B2 -5 211 1 3 1948 23 33 0 0 chr1 178706171 178706201 -18489231 + AT_rich Low_complexity Low_complexity 1 30 0 3 1948 229 341 111 10 chr1 178706541 178706748 -18488684 + Tigger15a DNA TcMar 443 670 -45 3 1948 1569 80 0 13 chr1 178706826 178707054 -18488378 - L1Md_F2 LINE L1 -5 6577 6353 3 1948 2988 57 2 32 chr1 178707055 178707457 -18487975 + L1Md_F2 LINE L1 5978 6367 -215 3 1948 404 118 15 0 chr1 178707804 178707872 -18487560 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 3 1948 230 321 65 19 chr1 178709022 178709130 -18486302 + MLT1L LTR MaLR 163 275 -335 3 1948 23 0 0 0 chr1 178710098 178710121 -18485311 + AT_rich Low_complexity Low_complexity 1 23 0 3 1948 976 158 22 11 chr1 178711158 178711343 -18484089 + B2_Mm2 SINE B2 3 189 -6 3 1948 520 254 67 50 chr1 178711668 178711908 -18483524 + RLTR42-int LTR ERVK 1156 1399 -4123 3 1948 477 219 16 8 chr1 178712763 178712892 -18482540 + Lx2B LINE L1 6871 7000 0 3 1948 317 324 14 0 chr1 178712969 178713040 -18482392 - ID4_ SINE ID -6 77 6 3 1948 24 77 0 0 chr1 178713151 178713203 -18482229 + AT_rich Low_complexity Low_complexity 1 52 0 3 1948 750 144 257 28 chr1 178714092 178714271 -18481161 + URR1A DNA MER1_type 5 224 -2 3 1948 633 184 156 14 chr1 178714594 178714768 -18480664 + ORR1D1 LTR MaLR 121 374 0 3 1948 26 50 0 0 chr1 178714887 178714927 -18480505 + AT_rich Low_complexity Low_complexity 1 40 0 3 1948 492 308 112 6 chr1 178715252 178715572 -18479860 + L1M2 LINE L1 3982 4335 -1808 3 1948 1443 59 0 21 chr1 178715620 178715811 -18479621 + B2_Mm2 SINE B2 1 187 -8 3 1948 371 271 0 0 chr1 178716175 178716245 -18479187 + PB1D10 SINE Alu 10 79 -38 3 1948 22 0 0 0 chr1 178716503 178716525 -18478907 + AT_rich Low_complexity Low_complexity 1 22 0 3 1948 210 288 17 0 chr1 178717278 178717337 -18478095 - PB1 SINE Alu -58 69 10 3 1948 389 261 101 47 chr1 178717564 178717713 -18477719 - RSINE1 SINE B4 -5 160 4 3 1948 21 36 0 0 chr1 178717722 178717750 -18477682 + AT_rich Low_complexity Low_complexity 1 28 0 3 1948 21 0 0 0 chr1 178718020 178718041 -18477391 + AT_rich Low_complexity Low_complexity 1 21 0 3 1948 25 75 0 0 chr1 178718522 178718575 -18476857 + AT_rich Low_complexity Low_complexity 1 53 0 3 1948 543 254 74 14 chr1 178718947 178718976 -18476456 + Looper DNA PiggyBac 140 166 -1392 3 1948 333 0 0 0 chr1 178718985 178719022 -18476410 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1948 374 297 71 21 chr1 178719022 178719153 -18476279 - RSINE1 SINE B4 -22 143 5 3 1948 543 254 74 14 chr1 178719153 178719339 -18476093 + Looper DNA PiggyBac 167 367 -1191 3 1948 268 225 107 74 chr1 178719350 178719499 -18475933 - Charlie5 DNA MER1_type -4 2620 2467 3 1948 237 65 0 0 chr1 178719517 178719548 -18475884 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1948 605 278 80 91 chr1 178719629 178720104 -18475328 + Looper DNA PiggyBac 393 862 -696 3 1948 955 272 22 17 chr1 178720180 178720412 -18475020 - B4 SINE B4 -14 278 46 3 1948 699 246 30 30 chr1 178720827 178721024 -18474408 + B3A SINE B2 2 198 0 3 1948 295 271 147 6 chr1 178721134 178721290 -18474142 - MIR SINE MIR -6 256 79 3 1948 269 241 0 0 chr1 178721412 178721470 -18473962 + B3 SINE B2 20 77 -139 3 1948 3722 91 28 0 chr1 178721562 178722100 -18473332 + L1_Mus3 LINE L1 6086 6638 0 3 1948 303 28 0 0 chr1 178723352 178723388 -18472044 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1948 225 0 0 0 chr1 178723388 178723412 -18472020 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1948 308 190 0 0 chr1 178723997 178724055 -18471377 - Charlie1a DNA MER1_type -723 732 675 3 1948 1342 96 137 9 chr1 178724086 178724297 -18471135 + 7SK RNA RNA 1 238 -93 3 1948 666 357 90 5 chr1 178724389 178724766 -18470666 - Charlie1a DNA MER1_type -946 509 101 3 1948 193 345 57 32 chr1 178724834 178724957 -18470475 + MIR SINE MIR 5 130 -132 3 1948 1492 238 97 3 chr1 178725176 178725559 -18469873 - MTD LTR MaLR 0 419 1 3 1948 36 62 0 0 chr1 178726171 178726235 -18469197 + AT_rich Low_complexity Low_complexity 1 64 0 3 1948 24 0 0 0 chr1 178726302 178726326 -18469106 + AT_rich Low_complexity Low_complexity 1 24 0 3 1948 252 295 12 82 chr1 178726570 178726655 -18468777 - B4A SINE B4 -105 187 109 3 1948 217 239 43 0 chr1 178726620 178726666 -18468766 - B1F SINE Alu -91 58 11 3 1948 1645 244 197 23 chr1 178726682 178727387 -18468045 + L1MA6 LINE L1 5312 6139 -161 3 1948 279 0 0 0 chr1 178727450 178727481 -18467951 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1948 571 247 63 67 chr1 178728112 178728504 -18466928 + L1MA4 LINE L1 5712 6081 -1392 3 1948 1295 35 7 0 chr1 178728517 178728662 -18466770 + B1_Mus2 SINE Alu 1 146 -1 3 1948 192 111 0 0 chr1 178728662 178728698 -18466734 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1948 1352 116 0 20 chr1 178729326 178729528 -18465904 + RMER6B LTR ERVK 1 198 -263 3 1948 2296 188 86 50 chr1 178729533 178730054 -18465378 + Lx5 LINE L1 6498 7037 -13 3 1948 823 236 103 34 chr1 178730054 178730287 -18465145 + RMER6B LTR ERVK 213 461 0 3 1948 194 331 90 8 chr1 178730947 178731081 -18464351 - L2a LINE L2 -146 3280 3136 3 1948 432 0 0 0 chr1 178731082 178731130 -18464302 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1948 879 257 150 11 chr1 178732304 178732685 -18462747 + L1MB2 LINE L1 5717 6150 -21 3 1948 436 333 121 24 chr1 178732721 178732970 -18462462 - B4A SINE B4 -19 273 1 3 1948 492 301 111 114 chr1 178733227 178733587 -18461845 + ORR1E LTR MaLR 1 359 0 3 1948 319 212 30 0 chr1 178733589 178733655 -18461777 + MLT1A1 LTR MaLR 20 87 -321 3 1948 4996 118 34 40 chr1 178733655 178734422 -18461010 + Lx4A LINE L1 6284 7045 -13 3 1948 363 96 0 0 chr1 178734422 178734474 -18460958 + (ATG)n Simple_repeat Simple_repeat 3 54 0 3 1948 921 132 132 37 chr1 178734652 178734841 -18460591 + MTC LTR MaLR 79 285 -136 3 1948 260 204 0 39 chr1 178734854 178734905 -18460527 + MTC LTR MaLR 346 394 0 3 1948 228 239 41 82 chr1 178735000 178735073 -18460359 - ID4 SINE ID -9 74 5 3 1948 27 62 0 0 chr1 178735313 178735361 -18460071 + AT_rich Low_complexity Low_complexity 1 48 0 3 1948 291 161 0 0 chr1 178735612 178735668 -18459764 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1948 582 328 29 19 chr1 178735670 178735878 -18459554 + MER2 DNA MER2_type 18 227 -118 3 1948 677 271 7 0 chr1 178735884 178736028 -18459404 + RSINE1 SINE B4 11 155 -10 3 1948 291 273 49 16 chr1 178736002 178736125 -18459307 + MER2 DNA MER2_type 156 291 -54 3 1948 263 346 0 0 chr1 178736165 178736243 -18459189 - ID4_ SINE ID -4 79 2 3 1948 189 0 0 0 chr1 178736519 178736540 -18458892 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3 1948 246 275 53 42 chr1 178736570 178736665 -18458767 + L2a LINE L2 2072 2167 -1252 3 1948 209 338 28 14 chr1 178736690 178736762 -18458670 + L2a LINE L2 2360 2432 -987 3 1948 214 342 132 0 chr1 178736996 178737148 -18458284 + L2a LINE L2 2941 3112 -314 3 1948 266 287 20 50 chr1 178737968 178738067 -18457365 + L3 LINE CR1 3574 3669 -820 3 1948 673 287 13 0 chr1 178740014 178740164 -18455268 - B3 SINE B2 -64 152 1 3 1948 444 341 66 59 chr1 178741036 178741307 -18454125 + B4A SINE B4 20 292 0 3 1948 296 198 70 94 chr1 178741549 178741701 -18453731 + MT2B LTR ERVL 102 254 -330 3 1948 468 203 28 92 chr1 178741617 178741758 -18453674 + B1_Mur3 SINE Alu 17 148 -1 3 1948 243 0 0 0 chr1 178741769 178741796 -18453636 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1948 1243 34 0 70 chr1 178741976 178742134 -18453298 + B1_Mus2 SINE Alu 1 147 0 3 1948 369 0 0 0 chr1 178742138 178742179 -18453253 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1948 22 56 0 0 chr1 178743872 178743908 -18451524 + GC_rich Low_complexity Low_complexity 1 36 0 3 1948 34 24 0 0 chr1 178743932 178743973 -18451459 + GC_rich Low_complexity Low_complexity 1 41 0 4 1948 201 147 0 0 chr1 178744111 178744145 -18451287 + (TCG)n Simple_repeat Simple_repeat 3 36 0 4 1948 194 81 0 26 chr1 178745244 178745282 -18450150 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1948 242 274 211 28 chr1 178745704 178745813 -18449619 - MIRb SINE MIR -116 152 24 4 1948 326 297 0 13 chr1 178747390 178747465 -18447967 + ID4 SINE ID 9 82 -1 4 1948 287 312 52 59 chr1 178748496 178748649 -18446783 + MIR3 SINE MIR 10 161 -47 4 1948 194 62 31 0 chr1 178749347 178749379 -18446053 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1948 183 42 0 0 chr1 178749466 178749490 -18445942 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1948 236 266 114 0 chr1 178749513 178749591 -18445841 + B1_Mus2 SINE Alu 1 86 -31 4 1948 607 312 63 19 chr1 178750421 178750627 -18444805 + MER20 DNA MER1_type 1 215 -4 4 1948 597 64 0 0 chr1 178751192 178751270 -18444162 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1948 272 330 40 30 chr1 178751602 178751702 -18443730 + RMER15 LTR ERVL 371 471 -104 4 1948 381 208 13 0 chr1 178752752 178752829 -18442603 + ID4 SINE ID 3 80 -3 4 1948 21 0 0 0 chr1 178752847 178752868 -18442564 + AT_rich Low_complexity Low_complexity 1 21 0 4 1948 825 320 51 14 chr1 178753648 178753924 -18441508 - B4 SINE B4 -6 286 1 4 1948 242 346 18 18 chr1 178754233 178754342 -18441090 + LTR82A LTR ERVL 33 141 -731 4 1948 273 341 33 28 chr1 178754452 178754633 -18440799 - L1MDb LINE L1 -5890 519 338 4 1948 207 0 0 0 chr1 178755755 178755778 -18439654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1948 430 239 38 23 chr1 178755778 178755911 -18439521 - B1F2 SINE Alu -9 140 6 4 1948 296 301 13 64 chr1 178755911 178755934 -18439498 - ID_B1 SINE B4 -9 215 68 4 1948 23 33 0 0 chr1 178756124 178756154 -18439278 + AT_rich Low_complexity Low_complexity 1 30 0 4 1948 1482 215 122 5 chr1 178759345 178759714 -18435718 + MTD LTR MaLR 1 412 -7 4 1948 451 304 111 16 chr1 178759725 178759969 -18435463 - L1MCa LINE L1 -5149 896 630 4 1948 470 288 165 21 chr1 178760031 178760322 -18435110 - L1MCa LINE L1 -5998 753 421 4 1948 237 33 0 0 chr1 178760595 178760625 -18434807 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1948 646 270 35 75 chr1 178761387 178761587 -18433845 + RMER30 DNA MER1_type 10 201 -1 4 1948 194 345 23 23 chr1 178761834 178761920 -18433512 + MIRm SINE MIR 2 87 -189 4 1948 405 0 0 0 chr1 178762427 178762472 -18432960 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1948 546 351 13 26 chr1 178763368 178763599 -18431833 - MIRb SINE MIR 0 268 41 4 1948 3145 60 39 10 chr1 178764364 178764751 -18430681 - MTB LTR MaLR -2 398 1 4 1948 3816 159 86 81 chr1 178764782 178765639 -18429793 - RMER19B LTR ERVK -39 863 2 4 1948 249 246 16 0 chr1 178765785 178765846 -18429586 + (CGG)n Simple_repeat Simple_repeat 2 63 0 4 1948 195 67 0 82 chr1 178766299 178766348 -18429084 + (CGGGG)n Simple_repeat Simple_repeat 2 46 0 4 1948 26 0 0 0 chr1 178767157 178767183 -18428249 + AT_rich Low_complexity Low_complexity 1 26 0 4 1948 225 174 34 25 chr1 178767186 178767258 -18428174 + CT-rich Low_complexity Low_complexity 1 72 0 4 1948 23 0 0 0 chr1 178767650 178767673 -18427759 + AT_rich Low_complexity Low_complexity 1 23 0 4 1948 360 0 0 0 chr1 178767792 178767832 -18427600 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1948 198 0 0 0 chr1 178768417 178768439 -18426993 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1948 25 31 0 0 chr1 178768879 178768911 -18426521 + AT_rich Low_complexity Low_complexity 1 32 0 4 1948 527 306 122 63 chr1 178769616 178769902 -18425530 - MER21B LTR ERV1 -511 352 50 4 1948 311 354 45 40 chr1 178770756 178770956 -18424476 - L1M4 LINE L1 -5302 1240 1040 4 1948 568 248 16 8 chr1 178771451 178771577 -18423855 - ID_B1 SINE B4 -7 217 91 4 1948 225 234 182 0 chr1 178771625 178771702 -18423730 - RLTR9F LTR ERVK -283 132 42 4 1948 326 224 138 27 chr1 178772027 178772122 -18423310 - B1F SINE Alu -15 134 38 4 1948 255 103 0 0 chr1 178772156 178772195 -18423237 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1948 801 82 40 40 chr1 178772331 178772483 -18422949 - RMER17B LTR ERVK -495 463 312 4 1948 328 285 95 116 chr1 178772486 178773012 -18422420 - L1MEc LINE L1 -1033 5286 4796 4 1948 244 325 12 12 chr1 178773126 178773207 -18422225 - ID4 SINE ID 0 83 3 4 1948 299 292 32 71 chr1 178773207 178773362 -18422070 - B1F2 SINE Alu 0 149 1 4 1948 315 288 35 52 chr1 178773549 178773780 -18421652 - L1MEc LINE L1 -3926 2474 2248 4 1948 265 295 54 66 chr1 178776546 178776706 -18418726 + MIR SINE MIR 4 153 -55 4 1948 336 102 0 0 chr1 178776981 178777030 -18418402 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1948 297 316 44 7 chr1 178777055 178777192 -18418240 - MIRb SINE MIR -18 250 109 4 1948 311 209 129 21 chr1 178777399 178777492 -18417940 + PB1D10 SINE Alu 4 106 -11 4 1948 561 278 6 36 chr1 178778091 178778259 -18417173 + RSINE1 SINE B4 1 163 -2 4 1948 32 57 0 0 chr1 178779904 178779957 -18415475 + AT_rich Low_complexity Low_complexity 1 53 0 4 1948 3493 109 8 0 chr1 178779957 178780444 -18414988 - Lx3_Mus LINE L1 0 7009 6519 4 1948 406 250 110 39 chr1 178781596 178781750 -18413682 - RSINE1 SINE B4 0 165 1 4 1949 427 57 57 0 chr1 178782569 178782657 -18412775 + (CTTG)n Simple_repeat Simple_repeat 2 94 0 4 1949 254 234 149 10 chr1 178782917 178783032 -18412400 - B3A SINE B2 -90 126 1 4 1949 26 0 0 0 chr1 178784164 178784190 -18411242 + AT_rich Low_complexity Low_complexity 1 26 0 4 1949 35820 61 14 2 chr1 178786118 178792230 -18403202 - L1Md_F2 LINE L1 -1 6581 394 4 1949 1764 50 135 4 chr1 178792582 178792842 -18402590 + L1_Mus3 LINE L1 6344 6637 -1 4 1949 508 219 24 16 chr1 178794799 178794924 -18400508 + B4A SINE B4 122 247 -45 4 1949 2476 250 142 74 chr1 178795985 178796901 -18398531 - Lx5 LINE L1 -15 7035 6058 4 1949 2420 180 29 11 chr1 178796956 178797399 -18398033 - L1_Mur3 LINE L1 -3 5877 5427 4 1949 2238 108 47 39 chr1 178797617 178798002 -18397430 - Lx3C LINE L1 0 6976 6589 4 1949 848 21 82 14 chr1 178798031 178798177 -18397255 + (TGAG)n Simple_repeat Simple_repeat 4 159 0 4 1949 211 293 193 46 chr1 178799729 178799947 -18395485 + L2c LINE L2 3138 3387 0 4 1949 183 129 0 0 chr1 178800919 178800950 -18394482 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1949 1213 236 10 14 chr1 178801422 178801710 -18393722 + B4A SINE B4 2 288 -4 4 1949 247 260 0 0 chr1 178801717 178801767 -18393665 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1949 206 130 0 61 chr1 178802500 178802549 -18392883 + GA-rich Low_complexity Low_complexity 3 48 0 4 1949 619 128 57 24 chr1 178804085 178804333 -18391099 + CT-rich Low_complexity Low_complexity 1 256 0 4 1949 29 0 0 0 chr1 178804891 178804920 -18390512 + AT_rich Low_complexity Low_complexity 1 29 0 4 1949 599 140 46 12 chr1 178804932 178805105 -18390327 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1949 405 0 0 0 chr1 178805174 178805219 -18390213 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1949 261 146 0 0 chr1 178805318 178805366 -18390066 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1949 388 173 0 12 chr1 178805371 178805453 -18389979 - B1_Mus1 SINE Alu -55 93 13 4 1949 25 83 0 0 chr1 178806133 178806193 -18389239 + AT_rich Low_complexity Low_complexity 1 60 0 4 1949 23 0 0 0 chr1 178807312 178807335 -18388097 + AT_rich Low_complexity Low_complexity 1 23 0 4 1949 278 298 53 11 chr1 178807858 178807953 -18387479 - RSINE1 SINE B4 -46 119 21 4 1949 255 215 0 0 chr1 178810614 178810679 -18384753 + T-rich Low_complexity Low_complexity 1 65 0 4 1949 2321 196 44 40 chr1 178812530 178813098 -18382334 + RLTR19-int LTR ERVK 1443 2012 -4125 4 1949 245 356 76 9 chr1 178813309 178813414 -18382018 - MER45C DNA Tip100 -513 440 329 4 1949 377 205 11 57 chr1 178813670 178813758 -18381674 - B1F SINE Alu 0 149 66 4 1949 578 262 50 0 chr1 178813992 178814152 -18381280 + B3A SINE B2 15 182 -16 4 1949 299 284 20 40 chr1 178814188 178814287 -18381145 + MER58B DNA MER1_type 244 340 -1 4 1949 21 36 0 0 chr1 178816522 178816550 -18378882 + AT_rich Low_complexity Low_complexity 1 28 0 4 1949 239 320 0 0 chr1 178817896 178817974 -18377458 - PB1 SINE Alu -8 119 42 4 1949 237 245 27 109 chr1 178819112 178819178 -18376254 - MTEb LTR MaLR 0 379 319 4 1949 1366 105 5 0 chr1 178819178 178819368 -18376064 - B2_Mm1t SINE B2 -2 191 1 4 1949 237 245 27 109 chr1 178819368 178819411 -18376021 - MTEb LTR MaLR -61 318 279 4 1949 272 288 30 0 chr1 178820196 178820307 -18375125 + ID4 SINE ID 1 116 -36 4 1949 330 102 0 0 chr1 178820311 178820360 -18375072 + B1_Mus2 SINE Alu 48 96 -51 4 1949 1290 18 35 0 chr1 178820360 178820530 -18374902 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 4 1949 825 116 34 23 chr1 178820532 178820709 -18374723 + GA-rich Low_complexity Low_complexity 2 180 0 4 1949 1191 82 6 6 chr1 178820959 178821130 -18374302 - B2_Mm2 SINE B2 -24 171 1 4 1949 350 284 38 29 chr1 178821236 178821341 -18374091 - PB1D10 SINE Alu 0 117 12 4 1949 399 273 60 7 chr1 178821365 178821548 -18373884 + L1M3 LINE L1 5264 5456 -728 4 1949 680 241 25 25 chr1 178821679 178821841 -18373591 + RSINE1 SINE B4 4 165 0 4 1949 391 283 21 2 chr1 178821882 178822018 -18373414 + L1M3 LINE L1 5472 5618 -555 4 1949 237 65 0 0 chr1 178823210 178823241 -18372191 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 4 1949 510 91 0 0 chr1 178823244 178823321 -18372111 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 4 1949 304 233 0 0 chr1 178823338 178823398 -18372034 + HAL1-3A_ME LINE L1 1975 2034 -824 5 1949 42110 5 0 0 chr1 178823454 178830029 -18365403 - L1Md_A LINE L1 0 6582 8 5 1949 263 304 40 8 chr1 178830039 178830165 -18365267 - L1_Rod LINE L1 -16 5831 5702 5 1949 466 226 18 18 chr1 178830157 178830286 -18365146 - L1M2 LINE L1 -1120 5026 4895 5 1949 1225 316 42 6 chr1 178830291 178830794 -18364638 + L1M2 LINE L1 3865 4385 -1758 5 1949 312 137 0 0 chr1 178830863 178830914 -18364518 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1949 3244 199 81 6 chr1 178830963 178831694 -18363738 + RMER1C Other Other 555 1340 -2 5 1949 428 299 55 37 chr1 178831772 178831935 -18363497 + B3A SINE B2 17 182 -34 5 1949 311 302 54 8 chr1 178831997 178832127 -18363305 + L1M2 LINE L1 4642 4777 -1366 5 1949 369 302 61 30 chr1 178832288 178832452 -18362980 + B3A SINE B2 28 196 -2 5 1949 333 0 0 0 chr1 178832986 178833023 -18362409 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1949 30 59 0 0 chr1 178834682 178834733 -18360699 + AT_rich Low_complexity Low_complexity 1 51 0 5 1949 461 168 16 23 chr1 178835591 178835719 -18359713 + (TATATG)n Simple_repeat Simple_repeat 6 132 0 5 1949 390 253 72 98 chr1 178835796 178835828 -18359604 - B2_Mm2 SINE B2 -3 192 158 5 1949 186 103 0 0 chr1 178835828 178835857 -18359575 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 5 1949 611 253 72 98 chr1 178835857 178836017 -18359415 - B3A SINE B2 -38 160 5 5 1949 270 0 0 0 chr1 178836351 178836381 -18359051 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 1949 414 312 18 18 chr1 178836729 178836951 -18358481 - Lx7 LINE L1 -485 7211 6990 5 1949 378 0 0 0 chr1 178837188 178837230 -18358202 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1949 300 246 77 72 chr1 178837608 178837619 -18357813 - B1F SINE Alu -1 148 119 5 1949 302 286 0 0 chr1 178837619 178837675 -18357757 - ID_B1 SINE B4 -6 218 163 5 1949 300 246 77 72 chr1 178837675 178837712 -18357720 - B1F SINE Alu -1 118 6 5 1949 189 151 70 0 chr1 178837784 178837870 -18357562 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 1949 1443 216 72 87 chr1 178838685 178839086 -18356346 - MTD LTR MaLR -3 416 22 5 1949 330 336 91 52 chr1 178839121 178839353 -18356079 + MamRep137 DNA TcMar? 120 360 -84 5 1949 21 0 0 0 chr1 178839761 178839782 -18355650 + AT_rich Low_complexity Low_complexity 1 21 0 5 1949 1345 294 32 6 chr1 178839799 178840358 -18355074 - Lx8 LINE L1 -230 7414 6721 5 1949 561 306 95 46 chr1 178840369 178840718 -18354714 + Lx8 LINE L1 6230 6595 -878 5 1949 508 366 62 13 chr1 178841424 178841651 -18353781 + MIRb SINE MIR 2 239 -29 5 1949 237 250 39 0 chr1 178841887 178841939 -18353493 + MER3 DNA MER1_type 3 56 -153 5 1949 245 298 157 0 chr1 178842423 178842544 -18352888 - B1F1 SINE Alu -9 140 1 5 1949 242 51 0 49 chr1 178843438 178843479 -18351953 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1949 241 263 18 0 chr1 178843533 178843590 -18351842 - MLT1H2 LTR MaLR -359 130 73 5 1949 257 0 30 0 chr1 178844783 178844816 -18350616 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1949 214 279 73 0 chr1 178845192 178845260 -18350172 + PB1 SINE Alu 55 127 0 5 1949 21 71 0 0 chr1 178845300 178845342 -18350090 + AT_rich Low_complexity Low_complexity 1 42 0 5 1949 369 277 9 44 chr1 178845437 178845551 -18349881 - PB1 SINE Alu -8 119 8 5 1949 620 200 250 0 chr1 178845631 178845791 -18349641 + B3 SINE B2 1 200 -16 5 1949 22 0 0 0 chr1 178845796 178845818 -18349614 + AT_rich Low_complexity Low_complexity 1 22 0 5 1949 334 210 0 0 chr1 178845846 178845908 -18349524 - Lx8 LINE L1 -705 6768 6707 5 1949 390 244 13 0 chr1 178846620 178846698 -18348734 - ID4 SINE ID -4 79 1 5 1949 252 316 116 55 chr1 178846753 178846917 -18348515 - MIRc SINE MIR -64 204 25 5 1949 861 277 42 21 chr1 178847138 178847422 -18348010 - B4A SINE B4 0 292 3 5 1949 1249 48 0 0 chr1 178847949 178848096 -18347336 - B1_Mm SINE Alu 0 147 1 5 1949 27 29 0 0 chr1 178848298 178848332 -18347100 + AT_rich Low_complexity Low_complexity 1 34 0 5 1949 25 0 0 0 chr1 178848404 178848429 -18347003 + AT_rich Low_complexity Low_complexity 1 25 0 5 1949 699 81 13 10 chr1 178848524 178848634 -18346798 + B1_Mm SINE Alu 1 120 0 5 1949 5514 17 0 0 chr1 178850165 178850826 -18344606 + L1Md_T LINE L1 4926 5586 -297 5 1949 7999 58 0 0 chr1 178850826 178851849 -18343583 + L1Md_T LINE L1 5587 6582 0 5 1949 253 369 19 10 chr1 178854332 178854436 -18340996 - MIRm SINE MIR -156 120 16 5 1949 1151 89 6 0 chr1 178854540 178854698 -18340734 + B2_Mm1a SINE B2 2 160 -33 5 1949 432 0 0 0 chr1 178854698 178854746 -18340686 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 5 1949 1061 160 0 27 chr1 178854746 178854773 -18340659 + B2_Mm2 SINE B2 160 182 -13 5 1949 315 0 0 0 chr1 178855000 178855035 -18340397 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1949 276 203 50 75 chr1 178856477 178856557 -18338875 - ID4_ SINE ID 0 83 6 5 1949 324 0 0 0 chr1 178856902 178856938 -18338494 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1949 198 191 41 41 chr1 178857943 178857992 -18337440 + L2b LINE L2 3240 3288 -87 5 1949 218 238 79 0 chr1 178865692 178865755 -18329677 - MIR SINE MIR -71 137 70 5 1949 385 321 56 28 chr1 178867463 178867713 -18327719 - MER33 DNA MER1_type -54 270 14 5 1949 393 308 79 96 chr1 178870068 178870424 -18325008 + L2 LINE L2 2705 3054 -365 5 1949 345 198 69 50 chr1 178870817 178870918 -18324514 + MIRc SINE MIR 3 105 -163 5 1949 663 240 20 59 chr1 178870925 178871129 -18324303 + B3A SINE B2 1 196 -2 5 1949 7420 74 13 6 chr1 178871154 178872237 -18323195 - L1_Mus3 LINE L1 -3 6635 5546 5 1949 305 133 33 0 chr1 178872237 178872297 -18323135 - B2_Mm1a SINE B2 -12 181 120 5 1949 410 56 0 0 chr1 178872275 178872329 -18323103 + MT2_Mm LTR ERVL 440 493 0 5 1949 246 274 50 23 chr1 178872356 178872578 -18322854 - L1M5 LINE L1 -291 5888 5659 5 1949 213 108 0 0 chr1 178873743 178873780 -18321652 + (C)n Simple_repeat Simple_repeat 1 37 0 5 1949 183 356 20 10 chr1 178874130 178874232 -18321200 - L2b LINE L2 -294 3081 2979 5 1949 689 251 27 58 chr1 178874796 178875020 -18320412 + ID_B1 SINE B4 3 219 -5 5 1949 1368 86 0 0 chr1 178875610 178875950 -18319482 + (CA)n Simple_repeat Simple_repeat 1 340 0 5 1949 274 224 0 84 chr1 178879274 178879357 -18316075 + PB1 SINE Alu 50 125 -2 5 1949 242 234 0 0 chr1 178879597 178879644 -18315788 + L2a LINE L2 3378 3424 -2 5 1949 272 342 92 42 chr1 178879739 178879858 -18315574 + MIRc SINE MIR 20 144 -124 5 1949 288 0 0 0 chr1 178879946 178879978 -18315454 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1949 297 403 0 37 chr1 178879978 178880112 -18315320 - MER2 DNA MER2_type -7 338 210 5 1949 282 362 0 19 chr1 178880105 178880212 -18315220 - ID2 SINE ID -46 106 2 5 1949 445 255 56 7 chr1 178880213 178880355 -18315077 - MER2 DNA MER2_type -121 224 76 5 1949 226 245 20 0 chr1 178881365 178881414 -18314018 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1949 358 78 0 19 chr1 178881417 178881469 -18313963 - HAL1-3A_ME LINE L1 -846 2012 1962 5 1949 187 226 15 75 chr1 178884052 178884119 -18311313 - L4 LINE RTE -317 1712 1650 5 1949 21 57 0 0 chr1 178884374 178884409 -18311023 + AT_rich Low_complexity Low_complexity 1 35 0 5 1949 711 174 74 0 chr1 178884499 178884620 -18310812 + B1_Mus2 SINE Alu 9 138 -9 5 1949 462 49 0 0 chr1 178884620 178884681 -18310751 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1949 1265 75 0 17 chr1 178885198 178885215 -18310217 - B2_Mm2 SINE B2 -20 175 159 5 1949 423 0 0 0 chr1 178885215 178885262 -18310170 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1949 1265 75 0 17 chr1 178885262 178885421 -18310011 - B2_Mm2 SINE B2 -37 158 2 5 1949 3953 111 42 46 chr1 178886060 178886814 -18308618 + RMER17A LTR ERVK 1 751 0 5 1949 217 340 89 42 chr1 178887328 178887492 -18307940 - MIRb SINE MIR -11 197 21 5 1949 216 261 66 90 chr1 178888236 178888358 -18307074 - L2a LINE L2 0 3426 3308 5 1949 180 331 139 25 chr1 178888363 178888521 -18306911 - L2 LINE L2 -1031 2388 2213 5 1949 272 27 0 26 chr1 178889046 178889084 -18306348 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1949 28 102 0 0 chr1 178889750 178889848 -18305584 + AT_rich Low_complexity Low_complexity 1 98 0 5 1949 225 261 158 42 chr1 178890419 178890539 -18304893 - MTEa LTR MaLR -14 365 232 5 1949 415 247 165 78 chr1 178891684 178891939 -18303493 + B4 SINE B4 3 279 -13 5 1949 296 361 95 51 chr1 178892908 178893223 -18302209 - ORR1E LTR MaLR 0 359 31 5 1949 419 250 35 70 chr1 178893680 178893822 -18301610 - MamRep1161 DNA TcMar -795 162 26 5 1949 189 26 25 50 chr1 178894212 178894252 -18301180 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 1949 1096 38 15 0 chr1 178894252 178894384 -18301048 - B1_Mm SINE Alu -13 134 1 5 1949 270 0 0 0 chr1 178894821 178894851 -18300581 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1949 435 38 0 0 chr1 178894851 178894903 -18300529 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1949 247 250 68 27 chr1 178895736 178895810 -18299622 + ORR1E LTR MaLR 35 111 -248 5 1949 255 303 0 84 chr1 178895831 178895914 -18299518 - RMER21A LTR ERV1 -112 835 760 5 1949 234 105 0 0 chr1 178896562 178896600 -18298832 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1949 303 325 33 58 chr1 178896744 178896865 -18298567 + MER63B DNA AcHobo 317 434 -2 5 1949 258 32 0 0 chr1 178897340 178897371 -18298061 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1949 629 256 113 30 chr1 178897797 178898027 -18297405 + B4A SINE B4 2 250 -42 5 1949 28 29 0 0 chr1 178899480 178899515 -18295917 + AT_rich Low_complexity Low_complexity 1 35 0 5 1949 331 209 14 69 chr1 178899632 178899704 -18295728 - ID_B1 SINE B4 -132 92 25 6 1949 282 203 149 68 chr1 178899641 178899715 -18295717 - ID4 SINE ID -2 81 2 6 1949 213 65 0 0 chr1 178900697 178900728 -18294704 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1949 26 0 0 0 chr1 178901877 178901903 -18293529 + AT_rich Low_complexity Low_complexity 1 26 0 6 1949 213 208 0 0 chr1 178902509 178902557 -18292875 + (CTGGGG)n Simple_repeat Simple_repeat 2 49 0 6 1949 258 116 0 0 chr1 178903177 178903220 -18292212 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1949 365 289 111 52 chr1 178903417 178903705 -18291727 - Tigger13a DNA MER2_type -466 305 1 6 1949 967 62 8 0 chr1 178903773 178903903 -18291529 + L1_Mus2 LINE L1 6436 6566 0 6 1949 1054 84 0 43 chr1 178904261 178904422 -18291010 - L1Md_F2 LINE L1 0 6582 6429 6 1949 470 224 9 36 chr1 178904444 178904555 -18290877 - B1_Mur1 SINE Alu -1 148 41 6 1949 406 179 15 0 chr1 178904697 178904764 -18290668 - PB1D9 SINE Alu -51 69 2 6 1949 27 29 0 0 chr1 178904770 178904804 -18290628 + AT_rich Low_complexity Low_complexity 1 34 0 6 1949 518 244 0 9 chr1 178904817 178904933 -18290499 - RSINE1 SINE B4 -36 129 15 6 1949 281 306 59 74 chr1 178905655 178905881 -18289551 - B4 SINE B4 -51 241 5 6 1949 339 186 69 28 chr1 178906239 178906311 -18289121 + B4A SINE B4 13 87 -205 6 1949 571 268 66 18 chr1 178906372 178906539 -18288893 + B4 SINE B4 111 285 -7 6 1949 251 330 27 36 chr1 178907434 178907529 -18287903 - RMER12 LTR ERVK -497 825 717 6 1949 549 147 23 114 chr1 178907529 178907544 -18287888 - B1_Mur4 SINE Alu 0 150 139 6 1949 288 0 0 0 chr1 178907544 178907576 -18287856 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1949 549 147 23 114 chr1 178907576 178907691 -18287741 - B1_Mur4 SINE Alu -12 138 32 6 1949 260 301 132 21 chr1 178907797 178907987 -18287445 - Lx8 LINE L1 -243 7230 7020 6 1949 674 115 17 42 chr1 178908252 178908356 -18287076 + B1_Mur3 SINE Alu 32 137 -12 6 1949 252 0 0 0 chr1 178908356 178908384 -18287048 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 6 1949 638 115 17 42 chr1 178908384 178908397 -18287035 + B1_Mus2 SINE Alu 137 146 -1 6 1949 226 337 47 0 chr1 178909153 178909239 -18286193 - MER112 DNA MER1_type -163 98 9 6 1949 441 0 0 0 chr1 178909368 178909417 -18286015 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1950 24 0 0 0 chr1 178913612 178913636 -18281796 + GC_rich Low_complexity Low_complexity 1 24 0 6 1950 186 222 0 27 chr1 178913811 178913848 -18281584 + L2b LINE L2 3264 3299 -76 6 1950 1881 62 9 1 chr1 178914652 178914912 -18280520 - L1_Mm LINE L1 -1516 4624 4340 6 1950 287 155 38 112 chr1 178914955 178915035 -18280397 - PB1D9 SINE Alu -1 119 46 6 1950 208 262 16 47 chr1 178915455 178915519 -18279913 - MIR SINE MIR -200 62 1 6 1950 183 270 151 43 chr1 178920498 178920591 -18274841 - MIRc SINE MIR -54 214 112 6 1950 284 242 19 154 chr1 178920656 178920695 -18274737 + MT2B LTR ERVL 130 147 -454 6 1950 693 172 8 32 chr1 178920695 178920821 -18274611 + B1_Mur1 SINE Alu 1 123 -26 6 1950 396 0 0 0 chr1 178920821 178920865 -18274567 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1950 321 47 0 0 chr1 178920865 178920907 -18274525 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1950 225 289 117 13 chr1 178920996 178921073 -18274359 + MIRb SINE MIR 180 264 -4 6 1950 303 175 0 0 chr1 178922223 178922280 -18273152 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 6 1950 438 312 0 0 chr1 178922584 178922693 -18272739 + PB1 SINE Alu 5 113 -14 6 1950 268 360 17 17 chr1 178922755 178922871 -18272561 + MIRb SINE MIR 117 232 -36 6 1950 221 250 62 0 chr1 178922938 178922986 -18272446 - MIRb SINE MIR -63 205 155 6 1950 192 77 0 0 chr1 178924743 178924769 -18270663 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1950 472 321 44 19 chr1 178926073 178926205 -18269227 + RSINE1 SINE B4 3 138 -27 6 1950 213 39 0 0 chr1 178926205 178926231 -18269201 + (CATG)n Simple_repeat Simple_repeat 1 26 0 6 1950 472 321 44 19 chr1 178926231 178926257 -18269175 + RSINE1 SINE B4 139 164 -1 6 1950 815 31 0 0 chr1 178928741 178928839 -18266593 + B1_Mus2 SINE Alu 50 147 0 6 1950 312 176 0 0 chr1 178928839 178928907 -18266525 + A-rich Low_complexity Low_complexity 2 69 0 6 1950 302 203 47 0 chr1 178930175 178930239 -18265193 + PB1 SINE Alu 37 103 -24 6 1950 682 225 21 26 chr1 178930283 178930478 -18264954 + B3 SINE B2 1 191 -7 6 1950 579 122 82 0 chr1 178930500 178930598 -18264834 - B1_Mus2 SINE Alu -1 146 41 6 1950 275 0 0 161 chr1 178930598 178930741 -18264691 + (CTCTG)n Simple_repeat Simple_repeat 5 124 0 6 1950 353 167 0 32 chr1 178930742 178930804 -18264628 - B1_Mur4 SINE Alu -90 60 1 6 1950 218 258 48 0 chr1 178932099 178932161 -18263271 - ID2 SINE ID -11 72 8 6 1950 235 219 94 0 chr1 178932174 178932238 -18263194 + tRNA-Ala-GCA tRNA tRNA 1 70 -5 6 1950 541 90 22 0 chr1 178932241 178932330 -18263102 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 6 1950 215 270 147 32 chr1 178932337 178932494 -18262938 + MIR3 SINE MIR 16 190 -18 6 1950 3343 38 8 0 chr1 178932647 178933040 -18262392 + MTA_Mm LTR MaLR 1 396 0 6 1950 449 252 25 34 chr1 178934080 178934199 -18261233 - ID_B1 SINE B4 -5 219 102 6 1950 417 252 37 98 chr1 178935802 178935965 -18259467 + B4A SINE B4 69 221 -71 6 1950 1071 53 0 0 chr1 178935838 178935971 -18259461 + B1_Mus1 SINE Alu 16 148 0 6 1950 216 97 0 0 chr1 178935971 178936002 -18259430 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1950 241 320 77 39 chr1 178936542 178936672 -18258760 + MIRb SINE MIR 124 258 -10 6 1950 228 271 125 104 chr1 178936833 178936944 -18258488 + ORR1E LTR MaLR 52 176 -183 6 1950 1676 158 171 12 chr1 178936944 178937284 -18258148 - ORR1B1 LTR MaLR 0 394 1 6 1950 6760 182 68 4 chr1 178937284 178938702 -18256730 - ORR1B1-int LTR MaLR 0 1509 1 6 1950 1973 141 134 11 chr1 178938702 178939053 -18256379 - ORR1B1 LTR MaLR 0 394 1 6 1950 228 271 125 104 chr1 178939053 178939236 -18256196 + ORR1E LTR MaLR 177 352 -7 6 1950 196 264 76 54 chr1 178939300 178939392 -18256040 + MIRm SINE MIR 84 177 -99 6 1950 303 269 73 9 chr1 178941565 178941674 -18253758 + ORR1E LTR MaLR 22 137 -222 6 1950 226 274 40 27 chr1 178941840 178941915 -18253517 + ORR1E LTR MaLR 312 387 -32 6 1950 449 243 180 22 chr1 178942675 178942814 -18252618 - MIRb SINE MIR -88 180 20 6 1950 219 270 31 31 chr1 178943382 178943447 -18251985 + MIRm SINE MIR 95 159 -117 6 1950 453 154 13 0 chr1 178951030 178951108 -18244324 + ID4 SINE ID 2 80 -3 6 1950 378 0 0 0 chr1 178956386 178956428 -18239004 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1950 243 0 0 0 chr1 178956428 178956454 -18238978 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1950 192 40 0 0 chr1 178956459 178956484 -18238948 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1950 1638 216 84 11 chr1 178956596 178956966 -18238466 + MTD LTR MaLR 23 419 0 6 1950 420 250 66 19 chr1 178956966 178957072 -18238360 - B3A SINE B2 -80 118 8 6 1950 29 47 0 0 chr1 178958532 178958575 -18236857 + AT_rich Low_complexity Low_complexity 1 43 0 6 1950 279 268 3 68 chr1 178962188 178962285 -18233147 + PB1D10 SINE Alu 1 93 -27 6 1950 669 225 27 27 chr1 178962935 178963081 -18232351 + B1_Mur3 SINE Alu 4 149 0 6 1950 1180 75 0 0 chr1 178963363 178963510 -18231922 + B1_Mus2 SINE Alu 1 147 0 6 1950 27 49 0 0 chr1 178963522 178963563 -18231869 + AT_rich Low_complexity Low_complexity 1 41 0 6 1950 207 0 0 0 chr1 178963593 178963616 -18231816 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1950 410 174 0 35 chr1 178963860 178963973 -18231459 + GA-rich Low_complexity Low_complexity 2 110 0 6 1950 241 229 0 0 chr1 178963985 178964033 -18231399 + MLT1B LTR MaLR 342 389 -1 6 1950 4311 171 100 11 chr1 178964061 178964328 -18231104 + Lx2B LINE L1 5812 6152 -848 6 1950 636 14 0 0 chr1 178964328 178964401 -18231031 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1950 4311 171 100 11 chr1 178964401 178965082 -18230350 + Lx2B LINE L1 6153 6845 -155 6 1950 316 272 0 0 chr1 178965070 178965162 -18230270 + Lx2 LINE L1 6906 6997 0 6 1950 31 0 0 0 chr1 178965238 178965269 -18230163 + AT_rich Low_complexity Low_complexity 1 31 0 6 1950 519 186 0 0 chr1 178966618 178966720 -18228712 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1950 303 206 196 0 chr1 178967029 178967136 -18228296 + L1MC LINE L1 3094 3221 -2925 6 1950 267 31 0 0 chr1 178968141 178968173 -18227259 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 6 1950 295 290 14 0 chr1 178968708 178968777 -18226655 + ID2 SINE ID 12 81 -2 6 1950 26 64 0 0 chr1 178969725 178969772 -18225660 + AT_rich Low_complexity Low_complexity 1 47 0 6 1950 37 0 0 0 chr1 178969892 178969929 -18225503 + AT_rich Low_complexity Low_complexity 1 37 0 6 1950 1041 176 17 71 chr1 178969974 178970212 -18225220 - URR1B DNA MER1_type 0 225 1 6 1950 235 212 13 154 chr1 178970521 178970599 -18224833 + B3 SINE B2 37 103 -113 6 1950 1376 18 20 9 chr1 178970602 178970944 -18224488 + (CA)n Simple_repeat Simple_repeat 1 346 0 6 1950 270 287 34 11 chr1 178971018 178971106 -18224326 + PB1D10 SINE Alu 19 108 -9 6 1950 541 281 0 0 chr1 178971373 178971494 -18223938 + B1_Mur1 SINE Alu 24 144 -5 6 1950 493 270 58 7 chr1 178971632 178971770 -18223662 - RSINE1 SINE B4 -17 148 4 6 1950 228 274 0 0 chr1 178972118 178972191 -18223241 - ID4 SINE ID -9 74 2 6 1950 1188 68 0 0 chr1 178972249 178972396 -18223036 - B1_Mm SINE Alu 0 147 1 6 1950 697 263 79 0 chr1 178972999 178973189 -18222243 + B4A SINE B4 2 206 -86 6 1950 1153 54 0 20 chr1 178973523 178973674 -18221758 + B1_Mus1 SINE Alu 1 148 0 6 1950 21 57 0 0 chr1 178973771 178973806 -18221626 + AT_rich Low_complexity Low_complexity 1 35 0 6 1950 504 229 19 0 chr1 178974437 178974542 -18220890 + B1_Mur2 SINE Alu 25 131 -18 6 1950 231 227 0 164 chr1 178974482 178974598 -18220834 + ID_B1 SINE B4 127 223 -1 7 1950 267 271 115 28 chr1 178974972 178975154 -18220278 - MER63C DNA AcHobo -48 882 685 7 1950 187 56 83 0 chr1 178975348 178975384 -18220048 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1950 768 68 248 0 chr1 178975386 178975503 -18219929 - B1_Mus1 SINE Alu -2 146 1 7 1950 327 175 132 36 chr1 178977514 178977597 -18217835 - PB1 SINE Alu 0 127 37 7 1950 533 257 0 0 chr1 178978944 178979053 -18216379 - B3 SINE B2 -4 212 104 7 1950 369 0 0 0 chr1 178979053 178979094 -18216338 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1950 588 65 0 0 chr1 178979429 178979506 -18215926 + (TCTCC)n Simple_repeat Simple_repeat 1 77 0 7 1950 186 43 0 0 chr1 178980425 178980448 -18214984 + (CAG)n Simple_repeat Simple_repeat 1 23 0 7 1950 183 184 0 0 chr1 178980469 178980507 -18214925 + CT-rich Low_complexity Low_complexity 3 40 0 7 1950 509 223 21 0 chr1 178980563 178980657 -18214775 - B1_Mur1 SINE Alu -20 129 34 7 1950 180 297 220 0 chr1 178980698 178980789 -18214643 - MIRm SINE MIR -155 121 11 7 1950 213 154 0 0 chr1 178981253 178981292 -18214140 + A-rich Low_complexity Low_complexity 2 40 0 7 1950 231 36 0 0 chr1 178982774 178982802 -18212630 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1950 411 118 0 0 chr1 178987299 178987375 -18208057 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1950 258 281 102 8 chr1 178987913 178988201 -18207231 + L1MB5 LINE L1 5833 6165 -19 7 1950 29 28 0 0 chr1 178988202 178988238 -18207194 + AT_rich Low_complexity Low_complexity 1 36 0 7 1950 473 319 159 36 chr1 178988335 178988637 -18206795 + MLT1G LTR MaLR 239 577 -14 7 1950 435 202 0 0 chr1 178988734 178988828 -18206604 + (CATA)n Simple_repeat Simple_repeat 2 95 0 7 1950 320 309 0 0 chr1 178990508 178990576 -18204856 + RSINE1 SINE B4 62 129 -36 7 1950 580 215 14 91 chr1 178990769 178990912 -18204520 - B1_Mur1 SINE Alu -6 143 12 7 1950 229 252 29 190 chr1 178990801 178990938 -18204494 - MT2B2 LTR ERVL -319 265 151 7 1950 284 338 0 0 chr1 178991065 178991136 -18204296 + B2_Mm2 SINE B2 1 71 -124 7 1950 30 0 0 0 chr1 178991179 178991209 -18204223 + AT_rich Low_complexity Low_complexity 1 30 0 7 1950 331 303 146 43 chr1 178991212 178991479 -18203953 + B4A SINE B4 2 292 0 7 1950 2886 163 105 18 chr1 178991706 178992317 -18203115 + RMER6C LTR ERVK 27 690 0 7 1950 21 82 0 0 chr1 178993584 178993633 -18201799 + AT_rich Low_complexity Low_complexity 1 49 0 7 1950 2986 212 74 67 chr1 178993676 178994497 -18200935 + Lx3B LINE L1 5595 6405 -568 7 1950 694 50 40 0 chr1 178994497 178994598 -18200834 + (GAAAA)n Simple_repeat Simple_repeat 3 107 0 7 1950 2986 212 74 67 chr1 178994598 178995145 -18200287 + Lx3B LINE L1 6406 6973 0 7 1950 29 60 0 0 chr1 178995304 178995354 -18200078 + AT_rich Low_complexity Low_complexity 1 50 0 7 1950 858 303 47 22 chr1 178995620 178995897 -18199535 - B4A SINE B4 -1 291 8 7 1950 284 260 53 80 chr1 178996194 178996307 -18199125 + RMER4B LTR ERVK 452 561 -24 7 1950 220 250 57 29 chr1 178996404 178996474 -18198958 - ID2 SINE ID -10 73 2 7 1950 326 330 9 0 chr1 178996659 178996765 -18198667 + Cheshire DNA MER1_type 169 275 -2145 7 1950 323 299 6 9 chr1 178998273 178998391 -18197041 + ID4_ SINE ID 4 120 -32 7 1950 22 35 0 0 chr1 178998579 178998608 -18196824 + AT_rich Low_complexity Low_complexity 1 29 0 7 1950 256 385 26 20 chr1 178999341 178999492 -18195940 + L4 LINE RTE 1226 1377 -652 7 1950 224 321 11 56 chr1 178999562 178999651 -18195781 + L2 LINE L2 1973 2057 -1362 7 1950 643 139 95 20 chr1 178999851 178999998 -18195434 - Lx2B LINE L1 -1 6999 6842 7 1950 239 93 0 23 chr1 179000673 179000717 -18194715 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 1 1950 600 14 0 0 chr1 179000746 179000815 -18194617 + (GGATG)n Simple_repeat Simple_repeat 1 69 0 2 1950 636 225 26 0 chr1 179001518 179001669 -18193763 - Lx9 LINE L1 -379 7265 7111 3 1950 562 175 168 0 chr1 179001667 179001810 -18193622 + Lx9 LINE L1 7303 7469 -175 3 1950 414 0 0 0 chr1 179001812 179001858 -18193574 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1950 245 186 181 29 chr1 179001859 179001964 -18193468 + Lx9 LINE L1 7517 7637 -7 3 1950 1483 245 81 16 chr1 179002204 179002589 -18192843 + MTD LTR MaLR 10 419 0 5 1950 352 264 26 16 chr1 179002726 179002957 -18192475 + L1MDa LINE L1 2464 2709 -3828 6 1950 198 0 0 0 chr1 179003199 179003221 -18192211 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1950 1190 264 112 66 chr1 179003369 179004357 -18191075 + L1M2 LINE L1 3532 4565 -1578 8 1950 817 255 176 13 chr1 179006243 179006549 -18188883 - MTEa LTR MaLR -13 366 11 9 1950 22 0 0 0 chr1 179007093 179007115 -18188317 + AT_rich Low_complexity Low_complexity 1 22 0 1 1950 291 156 0 15 chr1 179007657 179007722 -18187710 - Lx3_Mus LINE L1 0 7009 6946 1 1950 3397 76 32 0 chr1 179007720 179008181 -18187251 + Lx3_Mus LINE L1 6469 6944 -65 1 1950 754 267 40 0 chr1 179008256 179008458 -18186974 + B3 SINE B2 1 210 -6 1 1950 1156 68 0 0 chr1 179008477 179008624 -18186808 + B1_Mus1 SINE Alu 1 147 -1 1 1950 214 352 26 66 chr1 179009794 179009946 -18185486 - B4A SINE B4 -58 234 89 1 1950 867 101 169 6 chr1 179010680 179010840 -18184592 + B2_Mm2 SINE B2 4 189 -6 1 1950 253 317 93 67 chr1 179011823 179012016 -18183416 - L2a LINE L2 -2 3424 3227 1 1950 22482 155 63 24 chr1 179012494 179017512 -18177920 + Lx3C LINE L1 695 5932 -1044 1 1950 636 184 0 0 chr1 179017508 179017622 -18177810 + Lx3C LINE L1 6296 6409 -567 1 1950 2285 174 34 34 chr1 179017622 179018091 -18177341 + Lx3C LINE L1 6504 6972 -4 1 1950 184 389 0 0 chr1 179018149 179018203 -18177229 - L2b LINE L2 -92 3283 3230 1 1950 198 91 0 0 chr1 179020211 179020244 -18175188 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1950 1293 205 60 0 chr1 179020261 179020563 -18174869 + L1_Rod LINE L1 582 901 -6271 2 1950 11335 169 26 71 chr1 179020563 179021668 -18173764 + L1VL4 LINE L1 251 1352 -4531 2 1950 2495 89 26 0 chr1 179021668 179022016 -18173416 + IAPEY2_LTR LTR ERVK 1 357 0 2 1950 11335 123 13 28 chr1 179022016 179024083 -18171349 + L1VL4 LINE L1 1353 3238 -2609 2 1950 645 14 0 0 chr1 179024083 179024157 -18171275 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 2 1950 8394 222 67 104 chr1 179024157 179024772 -18170660 + L1VL4 LINE L1 3228 3798 -2049 2 1950 391 150 148 12 chr1 179024772 179024853 -18170579 + B1_Mus2 SINE Alu 53 144 -3 2 1950 8394 222 67 104 chr1 179024853 179025041 -18170391 + L1VL4 LINE L1 3799 3974 -1873 2 1950 1751 189 70 25 chr1 179025041 179025442 -18169990 + MTC LTR MaLR 1 419 -2 2 1950 6854 246 122 120 chr1 179025442 179026854 -18168578 + L1VL4 LINE L1 3975 5730 -117 2 1950 431 296 214 0 chr1 179027669 179028087 -18167345 + L1MD LINE L1 3231 3729 -2414 2 1950 22 70 0 0 chr1 179028487 179028530 -18166902 + AT_rich Low_complexity Low_complexity 1 43 0 2 1950 423 0 0 0 chr1 179029265 179029312 -18166120 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1950 261 325 21 11 chr1 179029382 179029487 -18165945 + B1_Mus1 SINE Alu 12 118 -30 2 1950 331 194 41 14 chr1 179029702 179029775 -18165657 - MIR SINE MIR -70 192 118 3 1950 22 0 0 0 chr1 179030412 179030434 -18164998 + AT_rich Low_complexity Low_complexity 1 22 0 3 1950 1932 62 15 8 chr1 179030438 179030700 -18164732 - L1_Mus1 LINE L1 0 6567 6304 3 1950 3233 140 111 20 chr1 179031081 179031692 -18163740 + Lx2 LINE L1 6330 6996 -1 3 1950 180 316 70 0 chr1 179031692 179031749 -18163683 - MIR SINE MIR -195 67 7 3 1950 30 77 0 0 chr1 179032050 179032115 -18163317 + AT_rich Low_complexity Low_complexity 1 65 0 3 1950 2538 79 3 17 chr1 179032476 179032838 -18162594 - Lx LINE L1 0 6654 6298 3 1950 2154 281 87 32 chr1 179033463 179034301 -18161131 + Lx9 LINE L1 6323 7206 -438 3 1950 26 82 0 0 chr1 179034372 179034433 -18160999 + AT_rich Low_complexity Low_complexity 1 61 0 3 1950 27 81 0 0 chr1 179034472 179034534 -18160898 + AT_rich Low_complexity Low_complexity 1 62 0 3 1950 2330 67 6 3 chr1 179034537 179034866 -18160566 + L1_Mur1 LINE L1 5172 5501 -385 4 1950 3257 127 95 18 chr1 179034866 179035426 -18160006 + Lx3A LINE L1 6365 6967 -14 4 1950 216 0 0 0 chr1 179035426 179035450 -18159982 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1950 423 312 148 70 chr1 179035635 179035993 -18159439 - L1MEg LINE L1 -4660 1424 1039 4 1950 1060 294 100 41 chr1 179036174 179036285 -18159147 + L1MA6 LINE L1 5386 5503 -668 4 1950 1159 104 23 41 chr1 179036285 179036506 -18158926 + Lx LINE L1 6438 6654 0 4 1950 1428 282 55 17 chr1 179036506 179037071 -18158361 + L1MA6 LINE L1 5504 6108 -192 4 1950 24 32 0 0 chr1 179037115 179037146 -18158286 + AT_rich Low_complexity Low_complexity 1 31 0 4 1950 222 299 0 0 chr1 179037379 179037496 -18157936 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1950 205 191 0 0 chr1 179037788 179037830 -18157602 + A-rich Low_complexity Low_complexity 1 42 0 4 1950 264 241 11 151 chr1 179037929 179038022 -18157410 + PB1D7 SINE Alu 28 107 -13 4 1950 198 0 0 0 chr1 179038228 179038250 -18157182 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1950 819 251 23 28 chr1 179038335 179038552 -18156880 + B3 SINE B2 1 216 0 5 1950 21 0 0 0 chr1 179038894 179038915 -18156517 + AT_rich Low_complexity Low_complexity 1 21 0 5 1950 304 232 0 0 chr1 179038930 179038986 -18156446 + ID4 SINE ID 2 57 -26 5 1950 711 196 118 0 chr1 179041882 179042035 -18153397 + ORR1D1 LTR MaLR 6 176 -198 5 1950 25 51 0 0 chr1 179042178 179042217 -18153215 + AT_rich Low_complexity Low_complexity 1 39 0 5 1950 186 43 0 0 chr1 179042311 179042334 -18153098 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1950 671 132 0 9 chr1 179042385 179042500 -18152932 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 5 1950 622 323 57 32 chr1 179043226 179043711 -18151721 + L1_Rod LINE L1 2090 2565 -3315 5 243 596 272 0 13 chr1 179044254 179044403 -18151029 + B1_Mur2 SINE Alu 2 148 -1 5 1951 183 309 68 58 chr1 179044511 179044614 -18150818 + L4 LINE RTE 1231 1334 -695 6 1951 190 307 25 51 chr1 179044581 179044660 -18150772 - MIRc SINE MIR -109 159 83 6 1951 791 265 82 0 chr1 179045911 179046107 -18149325 - ID_B1 SINE B4 0 224 13 6 1951 22 0 0 0 chr1 179047457 179047479 -18147953 + AT_rich Low_complexity Low_complexity 1 22 0 6 1951 21 36 0 0 chr1 179048462 179048490 -18146942 + AT_rich Low_complexity Low_complexity 1 28 0 6 1951 186 43 0 0 chr1 179048518 179048541 -18146891 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1951 2149 169 42 3 chr1 179048669 179049055 -18146377 + MTC LTR MaLR 1 401 -20 6 1951 3674 97 28 2 chr1 179049199 179049734 -18145698 + L1Md_F2 LINE L1 6034 6582 0 6 1951 229 303 166 16 chr1 179050038 179050199 -18145233 + MIRb SINE MIR 66 256 -6 6 1951 2422 165 51 53 chr1 179050294 179050819 -18144613 + MT2A LTR ERVL 5 528 -5 6 1951 5437 105 31 4 chr1 179050948 179051754 -18143678 + Lx2 LINE L1 6166 6993 -4 7 1951 216 316 51 0 chr1 179052744 179052823 -18142609 - L2 LINE L2 -675 2744 2662 7 1951 6949 118 55 3 chr1 179052937 179054649 -18140783 + Lx LINE L1 4851 6646 -8 7 1951 317 230 58 0 chr1 179056033 179056120 -18139312 + MTEa LTR MaLR 288 379 0 7 1951 489 292 82 22 chr1 179056216 179056398 -18139034 - B3A SINE B2 -3 195 3 7 1951 370 336 44 0 chr1 179058000 179058113 -18137319 + B1_Mur1 SINE Alu 16 133 -16 7 1951 633 335 74 4 chr1 179058633 179058876 -18136556 - B4A SINE B4 -2 290 31 7 1951 538 242 45 15 chr1 179059037 179059171 -18136261 - B3 SINE B2 0 216 79 7 1951 211 203 203 0 chr1 179061697 179061756 -18133676 - PB1D10 SINE Alu -5 112 42 7 1951 338 278 20 10 chr1 179062046 179062144 -18133288 + PB1D7 SINE Alu 1 99 -21 7 1951 203 242 48 0 chr1 179062177 179062239 -18133193 + GA-rich Low_complexity Low_complexity 4 68 0 8 1951 368 246 62 82 chr1 179062583 179062609 -18132823 + ID_B1 SINE B4 79 215 -9 8 1951 574 222 0 64 chr1 179062609 179062719 -18132713 + B1_Mur1 SINE Alu 32 138 -11 8 1951 207 0 0 0 chr1 179062719 179062742 -18132690 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1951 512 269 115 48 chr1 179063114 179063384 -18132048 - Charlie1a DNA MER1_type -579 876 589 8 1951 23 33 0 0 chr1 179064170 179064200 -18131232 + AT_rich Low_complexity Low_complexity 1 30 0 8 1951 345 102 0 0 chr1 179064329 179064388 -18131044 + (CAGT)n Simple_repeat Simple_repeat 4 62 0 8 1951 632 277 54 0 chr1 179065196 179065344 -18130088 - B4A SINE B4 -136 156 1 8 1951 285 331 92 21 chr1 179066401 179066543 -18128889 + MLT1C LTR MaLR 312 463 -4 8 1951 1321 103 0 16 chr1 179066578 179066765 -18128667 - B2_Mm2 SINE B2 -11 184 1 8 1951 363 254 66 15 chr1 179068094 179068196 -18127236 + PB1D10 SINE Alu 2 94 -23 9 1951 211 282 203 8 chr1 179068199 179068317 -18127115 + MIR SINE MIR 22 162 -100 9 1951 544 299 25 55 chr1 179068545 179068747 -18126685 - B3A SINE B2 0 198 3 9 1951 742 265 90 11 chr1 179069031 179069298 -18126134 + B4A SINE B4 1 288 -4 9 1951 263 351 17 33 chr1 179069311 179069491 -18125941 + (CATA)n Simple_repeat Simple_repeat 3 179 0 9 1951 730 229 113 31 chr1 179069519 179069713 -18125719 + B3 SINE B2 1 210 -6 9 1951 531 129 62 108 chr1 179069873 179070003 -18125429 + RMER19B LTR ERVK 314 437 -465 9 1951 1058 191 19 86 chr1 179069993 179070262 -18125170 + RMER19C LTR ERVK 361 611 0 9 1951 240 302 31 16 chr1 179070323 179070387 -18125045 + ID_B1 SINE B4 78 142 -82 9 1951 426 258 34 0 chr1 179070337 179070426 -18125006 + PB1 SINE Alu 13 104 -23 9 1951 1102 195 18 13 chr1 179071093 179071317 -18124115 + URR1B DNA MER1_type 1 225 0 1 1951 672 171 0 0 chr1 179071898 179072015 -18123417 + B1_Mur4 SINE Alu 34 150 0 1 1951 21 0 0 0 chr1 179072328 179072349 -18123083 + AT_rich Low_complexity Low_complexity 1 21 0 1 1951 300 294 50 92 chr1 179072939 179073059 -18122373 + MIR SINE MIR 43 157 -105 1 1951 1033 78 28 0 chr1 179073129 179073271 -18122161 + B1_Mus1 SINE Alu 2 147 -1 1 1951 297 0 0 0 chr1 179073271 179073304 -18122128 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1951 216 111 0 0 chr1 179073313 179073349 -18122083 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 1 1951 182 283 0 48 chr1 179073407 179073470 -18121962 + L3 LINE CR1 4121 4180 -309 1 1951 746 265 121 26 chr1 179073485 179073749 -18121683 + B4A SINE B4 1 289 -3 1 1951 5142 63 6 13 chr1 179073832 179074509 -18120923 + L1Md_F2 LINE L1 5911 6582 0 1 1951 32 36 0 18 chr1 179074787 179074803 -18120629 + AT_rich Low_complexity Low_complexity 1 16 0 1 1951 297 0 0 0 chr1 179074803 179074836 -18120596 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1951 32 36 0 18 chr1 179074836 179074876 -18120556 + AT_rich Low_complexity Low_complexity 1 40 0 1 1951 22 0 0 0 chr1 179075074 179075096 -18120336 + AT_rich Low_complexity Low_complexity 1 22 0 1 1951 25 0 0 0 chr1 179075601 179075626 -18119806 + AT_rich Low_complexity Low_complexity 1 25 0 1 1951 23 0 0 0 chr1 179075683 179075706 -18119726 + AT_rich Low_complexity Low_complexity 1 23 0 1 1951 306 0 0 0 chr1 179076141 179076175 -18119257 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1951 453 50 0 0 chr1 179076636 179076696 -18118736 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1951 401 282 0 12 chr1 179076696 179076955 -18118477 + (CA)n Simple_repeat Simple_repeat 1 255 0 1 1951 925 83 7 7 chr1 179077052 179077198 -18118234 + (GGAA)n Simple_repeat Simple_repeat 1 146 0 1 1951 257 0 30 0 chr1 179077709 179077742 -18117690 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 1 1951 695 185 7 44 chr1 179077745 179077881 -18117551 - B1_Mur2 SINE Alu -7 142 12 1 1951 222 333 166 24 chr1 179078765 179078934 -18116498 - MIRb SINE MIR -64 204 12 1 1951 468 62 0 0 chr1 179079933 179079997 -18115435 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1951 184 214 45 45 chr1 179081642 179081686 -18113746 - L2a LINE L2 -38 3388 3345 1 1951 306 67 0 0 chr1 179081691 179081736 -18113696 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 1 1951 4922 99 12 27 chr1 179082807 179083551 -18111881 + Lx3A LINE L1 6249 6981 0 1 1951 22 0 0 0 chr1 179083554 179083576 -18111856 + AT_rich Low_complexity Low_complexity 1 22 0 1 1951 290 286 0 0 chr1 179083733 179083789 -18111643 - RSINE1 SINE B4 -107 58 3 1 1951 3384 78 2 2 chr1 179085428 179085880 -18109552 + L1_Mus2 LINE L1 6115 6566 0 1 1951 2720 206 30 91 chr1 179086310 179086586 -18108846 - RMER1B Other Other -11 1055 793 1 1951 2384 54 13 3 chr1 179086586 179086900 -18108532 - L1_Mus3 LINE L1 0 6638 6322 1 1951 2720 206 30 91 chr1 179086900 179087316 -18108116 - RMER1B Other Other -274 792 405 1 1951 335 361 121 68 chr1 179088836 179089216 -18106216 - MLT1J1 LTR MaLR -44 400 1 1 1951 32 67 0 0 chr1 179089465 179089525 -18105907 + AT_rich Low_complexity Low_complexity 1 60 0 1 1951 8217 103 64 14 chr1 179090089 179091364 -18104068 + Lx3A LINE L1 5626 6966 -15 1 1951 183 80 0 0 chr1 179091364 179091389 -18104043 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1 1951 27 0 0 0 chr1 179091499 179091526 -18103906 + AT_rich Low_complexity Low_complexity 1 27 0 1 1951 607 309 0 0 chr1 179091752 179091888 -18103544 + RSINE1 SINE B4 14 149 -16 1 1951 1137 78 0 0 chr1 179092186 179092327 -18103105 + B1_Mus1 SINE Alu 2 142 -6 1 1951 727 274 40 15 chr1 179092526 179092726 -18102706 - ID_B1 SINE B4 -17 207 3 1 1951 8882 115 26 7 chr1 179092905 179094354 -18101078 + L1_Mus3 LINE L1 4434 5909 -729 1 1951 3087 56 5 5 chr1 179094354 179094750 -18100682 + MTA_Mm LTR MaLR 1 396 0 1 1951 7643 64 33 11 chr1 179094750 179095450 -18099982 + L1_Mus3 LINE L1 5910 6635 -3 1 1951 237 309 29 14 chr1 179096127 179096196 -18099236 + ID SINE ID 19 88 -136 1 1951 265 283 17 109 chr1 179096196 179096246 -18099186 + ID4 SINE ID 19 126 -26 1 1951 26 64 0 0 chr1 179096495 179096542 -18098890 + AT_rich Low_complexity Low_complexity 1 47 0 1 1951 22 0 0 0 chr1 179097451 179097473 -18097959 + AT_rich Low_complexity Low_complexity 1 22 0 1 1951 25 31 0 0 chr1 179097597 179097629 -18097803 + AT_rich Low_complexity Low_complexity 1 32 0 1 1951 1528 52 0 49 chr1 179097714 179097917 -18097515 + B2_Mm1t SINE B2 1 193 0 1 1951 191 61 0 29 chr1 179098209 179098243 -18097189 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1 1951 1184 68 0 0 chr1 179098249 179098396 -18097036 - B1_Mus1 SINE Alu 0 148 2 1 1951 449 291 190 30 chr1 179098858 179099095 -18096337 + B4A SINE B4 1 275 -17 1 1951 314 292 161 0 chr1 179099347 179099484 -18095948 + MER110A LTR ERV1 70 228 -240 1 1951 308 303 68 34 chr1 179100054 179100201 -18095231 + MER89 LTR ERV1 362 513 -46 1 1951 2802 102 37 25 chr1 179100250 179100684 -18094748 + Lx3B LINE L1 6535 6973 0 1 1951 244 155 27 53 chr1 179100684 179100749 -18094683 + A-rich Low_complexity Low_complexity 15 77 0 1 1951 29 78 0 0 chr1 179102794 179102858 -18092574 + AT_rich Low_complexity Low_complexity 1 64 0 1 1951 246 128 0 0 chr1 179102915 179102954 -18092478 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1951 1124 285 6 37 chr1 179102955 179103305 -18092127 - Lx9 LINE L1 -186 7458 7120 1 1951 1947 278 140 7 chr1 179103307 179103985 -18091447 - Lx9 LINE L1 -752 6892 6125 1 1951 363 274 88 9 chr1 179104837 179104951 -18090481 + MIRc SINE MIR 88 210 -58 1 1951 435 281 110 10 chr1 179106626 179106880 -18088552 - Charlie5 DNA MER1_type -9 2615 2352 1 1951 30 45 0 0 chr1 179106929 179106973 -18088459 + AT_rich Low_complexity Low_complexity 1 44 0 1 1951 411 295 15 76 chr1 179108090 179108222 -18087210 + MER58A DNA MER1_type 50 173 -51 1 1951 889 277 103 22 chr1 179108370 179108643 -18086789 + Tigger7 DNA MER2_type 11 305 -2186 1 1951 570 271 122 31 chr1 179108644 179108930 -18086502 + Tigger7 DNA MER2_type 2134 2445 -46 1 1951 391 234 82 27 chr1 179109552 179109662 -18085770 + PB1D10 SINE Alu 1 116 -1 1 1951 7969 95 57 38 chr1 179111086 179112601 -18082831 + Lx3A LINE L1 5430 6978 -3 1 1951 27 49 0 0 chr1 179112601 179112642 -18082790 + AT_rich Low_complexity Low_complexity 1 41 0 1 1951 1139 39 26 6 chr1 179112700 179112856 -18082576 - L1Md_F2 LINE L1 -14 6568 6410 1 1951 651 120 0 0 chr1 179112883 179112991 -18082441 + (TG)n Simple_repeat Simple_repeat 2 109 0 1 1951 387 0 0 0 chr1 179113305 179113348 -18082084 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1 1951 1026 97 0 0 chr1 179113348 179113492 -18081940 - B1_Mus1 SINE Alu -3 145 2 1 1951 4243 45 6 0 chr1 179113522 179114030 -18081402 + L1_Mus1 LINE L1 6054 6564 -3 1 1951 5635 218 71 69 chr1 179114275 179115602 -18079830 + Lx7 LINE L1 5861 7258 -438 1 1951 560 53 13 0 chr1 179115602 179115678 -18079754 - B1_Mus2 SINE Alu 0 147 71 1 1951 5635 218 71 69 chr1 179115678 179115816 -18079616 + Lx7 LINE L1 7259 7405 -291 1 1951 225 292 22 33 chr1 179115816 179115908 -18079524 + RMER12 LTR ERVK 743 833 -489 1 1951 402 184 40 6 chr1 179116020 179116118 -18079314 + Lx7 LINE L1 7605 7692 -4 1 1951 303 93 0 0 chr1 179117253 179117296 -18078136 + (CAAG)n Simple_repeat Simple_repeat 1 43 0 1 1951 1213 34 7 0 chr1 179120120 179120266 -18075166 + B1_Mm SINE Alu 1 147 0 1 1951 548 205 120 0 chr1 179121958 179122075 -18073357 - Lx6 LINE L1 -430 7030 6900 1 1951 22 0 0 0 chr1 179122693 179122715 -18072717 + AT_rich Low_complexity Low_complexity 1 22 0 1 1951 978 217 19 14 chr1 179122944 179123159 -18072273 + B3 SINE B2 1 216 0 1 1951 442 248 89 57 chr1 179123318 179123476 -18071956 + B3A SINE B2 25 187 -8 1 1951 357 228 124 67 chr1 179123684 179123877 -18071555 + Lx5 LINE L1 6008 6211 -839 1 1951 396 55 0 0 chr1 179124208 179124263 -18071169 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1951 495 297 8 0 chr1 179124379 179124497 -18070935 - B4 SINE B4 -133 159 41 1 1951 1207 321 62 22 chr1 179124678 179125228 -18070204 - MER82 DNA MER2_type -16 637 66 1 1951 465 305 6 55 chr1 179125493 179125656 -18069776 + RSINE1 SINE B4 3 157 -8 1 1951 320 328 93 60 chr1 179125877 179126244 -18069188 + L1MEg LINE L1 1051 1429 -4655 1 1951 270 0 0 0 chr1 179126252 179126282 -18069150 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1 1951 693 239 14 0 chr1 179126711 179126853 -18068579 + B1_Mur1 SINE Alu 1 144 -5 1 1951 33 25 0 0 chr1 179128262 179128302 -18067130 + AT_rich Low_complexity Low_complexity 1 40 0 1 1951 29 0 0 0 chr1 179128664 179128693 -18066739 + AT_rich Low_complexity Low_complexity 1 29 0 1 1951 21 0 0 0 chr1 179130117 179130138 -18065294 + AT_rich Low_complexity Low_complexity 1 21 0 1 1951 21 0 0 0 chr1 179130221 179130242 -18065190 + AT_rich Low_complexity Low_complexity 1 21 0 1 1951 25 75 0 0 chr1 179130277 179130330 -18065102 + AT_rich Low_complexity Low_complexity 1 53 0 1 1951 551 302 24 30 chr1 179130485 179130649 -18064783 + RSINE1 SINE B4 3 165 0 1 1951 280 214 125 28 chr1 179130820 179130892 -18064540 + B3A SINE B2 8 86 -112 1 1951 207 69 0 0 chr1 179131380 179131409 -18064023 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1951 45 19 0 0 chr1 179132948 179133000 -18062432 + AT_rich Low_complexity Low_complexity 1 52 0 1 1951 1217 153 23 14 chr1 179133091 179133310 -18062122 - URR1B DNA MER1_type 0 225 5 1 1951 306 286 12 0 chr1 179133776 179133860 -18061572 + B1F SINE Alu 7 91 -58 1 1951 1260 139 158 15 chr1 179134134 179134451 -18060981 + L1_Mur1 LINE L1 5102 5544 -342 1 1951 333 318 106 18 chr1 179135170 179135503 -18059929 + L1M2 LINE L1 2167 2527 -4322 2 1951 493 393 0 0 chr1 179135844 179135994 -18059438 + RSINE1 SINE B4 4 153 -12 2 1951 27 29 0 0 chr1 179136030 179136064 -18059368 + AT_rich Low_complexity Low_complexity 1 34 0 2 1951 631 289 75 98 chr1 179136083 179136248 -18059184 + L1M2 LINE L1 2921 3093 -3749 2 1951 411 282 151 49 chr1 179136248 179136513 -18058919 + B4A SINE B4 1 292 0 2 1951 813 289 75 98 chr1 179136513 179137126 -18058306 + L1M2 LINE L1 3078 3681 -3161 2 1951 622 268 87 30 chr1 179137125 179137563 -18057869 + L1M2 LINE L1 3932 4394 -2451 2 1951 2144 108 87 17 chr1 179137627 179137985 -18057447 - Lx LINE L1 0 6654 6272 2 1951 619 121 11 0 chr1 179137985 179138076 -18057356 - Lx LINE L1 -581 6073 5982 2 1951 781 75 16 16 chr1 179138088 179138210 -18057222 + (GGGGA)n Simple_repeat Simple_repeat 5 126 0 2 1951 4372 116 39 21 chr1 179138220 179138919 -18056513 + Lx4A LINE L1 6348 7058 0 2 1951 700 313 159 22 chr1 179140668 179140988 -18054444 + MLT1A LTR MaLR 1 364 -10 2 1951 512 200 27 0 chr1 179141258 179141408 -18054024 + GA-rich Low_complexity Low_complexity 1 154 0 2 1951 545 189 0 36 chr1 179141769 179141879 -18053553 - B1_Mur4 SINE Alu 0 150 45 2 1951 37926 30 0 1 chr1 179143174 179149600 -18045832 - L1Md_T LINE L1 0 6585 66 2 1951 455 256 104 43 chr1 179149737 179149909 -18045523 + B4 SINE B4 42 224 -68 2 1951 670 129 0 24 chr1 179149790 179149914 -18045518 + B1_Mur1 SINE Alu 9 119 -1 2 1951 251 167 61 91 chr1 179150009 179150075 -18045357 - MLT1A0 LTR MaLR -301 64 1 2 1951 379 316 84 62 chr1 179150745 179150971 -18044461 + MLT1F LTR MaLR 315 545 -3 2 1951 936 248 24 0 chr1 179151590 179151796 -18043636 - B3 SINE B2 -4 212 2 2 1951 380 337 84 21 chr1 179151974 179152165 -18043267 - Arthur1B DNA Tip100 -707 518 316 2 1951 704 117 19 0 chr1 179153054 179153157 -18042275 - MT2B2 LTR ERVL -422 162 58 2 1951 9345 83 20 7 chr1 179153157 179155182 -18040250 + L1VL4 LINE L1 203 2254 -1305 2 1951 5833 125 2 9 chr1 179155172 179156063 -18039369 + Lx2 LINE L1 5761 6645 -352 2 1951 1194 135 43 14 chr1 179156061 179156272 -18039160 + Lx2 LINE L1 6775 6991 -6 2 1951 3060 55 45 19 chr1 179156432 179156444 -18038988 + L1_Mur1 LINE L1 1696 1707 -4179 2 1951 352 238 0 0 chr1 179156444 179156524 -18038908 - tRNA-Leu-TTG tRNA tRNA -3 83 4 2 1951 3060 55 45 19 chr1 179156524 179156975 -18038457 + L1_Mur1 LINE L1 1708 2171 -3715 2 1951 475 266 15 15 chr1 179157014 179157144 -18038288 - B1F SINE Alu -7 142 13 2 1951 324 0 0 0 chr1 179157219 179157255 -18038177 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 2 1951 297 307 0 0 chr1 179157434 179157509 -18037923 - PB1D10 SINE Alu -31 86 12 2 1951 218 270 0 100 chr1 179157460 179157530 -18037902 - B4A SINE B4 -147 145 83 2 1951 388 310 131 21 chr1 179157579 179157770 -18037662 - ID_B1 SINE B4 -8 216 5 2 1951 536 288 21 21 chr1 179158001 179158143 -18037289 + B1F SINE Alu 8 149 0 2 1951 355 298 108 45 chr1 179158390 179158566 -18036866 + MLT1J2 LTR MaLR 62 248 -200 2 1951 308 286 0 0 chr1 179159124 179159194 -18036238 + PB1D10 SINE Alu 1 70 -47 2 1951 6156 63 24 30 chr1 179159228 179160068 -18035364 - L1Md_F2 LINE L1 -12 6570 5736 2 1951 951 172 135 0 chr1 179160068 179160260 -18035172 - URR1A DNA MER1_type -3 223 6 2 1951 27 49 0 0 chr1 179160893 179160934 -18034498 + AT_rich Low_complexity Low_complexity 1 41 0 2 1951 588 311 14 54 chr1 179162277 179162498 -18032934 - ID_B1 SINE B4 -9 215 4 2 1951 342 0 0 0 chr1 179162517 179162555 -18032877 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1951 795 97 18 0 chr1 179162856 179162970 -18032462 + PB1D9 SINE Alu 1 116 -4 2 1951 234 0 0 0 chr1 179162971 179162997 -18032435 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2 1951 4801 66 14 35 chr1 179163190 179163884 -18031548 + L1_Mus3 LINE L1 5959 6638 0 2 1951 317 333 83 0 chr1 179164718 179164838 -18030594 + B1F1 SINE Alu 1 130 -19 2 1951 311 353 62 44 chr1 179165112 179165272 -18030160 - RSINE1 SINE B4 0 165 3 2 1951 244 356 33 26 chr1 179165372 179165525 -18029907 - HAL1 LINE L1 -1602 905 752 2 1951 238 316 84 0 chr1 179166243 179166338 -18029094 + L1MB2 LINE L1 5950 6052 -119 2 1951 274 305 85 0 chr1 179166525 179166643 -18028789 + L2a LINE L2 3191 3318 -108 2 1951 265 239 28 69 chr1 179166999 179167071 -18028361 + B3 SINE B2 114 182 -34 2 1951 243 232 0 18 chr1 179167125 179167182 -18028250 + L1_Mur3 LINE L1 5504 5559 -321 2 1951 192 152 0 0 chr1 179167335 179167368 -18028064 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 2 1951 32 81 0 0 chr1 179167790 179167864 -18027568 + AT_rich Low_complexity Low_complexity 1 74 0 2 1951 1055 39 46 0 chr1 179167912 179168042 -18027390 - B1_Mus1 SINE Alu -11 137 2 2 1951 321 260 177 0 chr1 179168157 179168253 -18027179 + RSINE1 SINE B4 1 113 -52 2 1951 375 113 0 0 chr1 179168355 179168417 -18027015 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1951 365 92 0 44 chr1 179169259 179169327 -18026105 + (A)n Simple_repeat Simple_repeat 1 65 0 2 1951 4688 31 2 0 chr1 179169593 179170139 -18025293 + L1Md_F2 LINE L1 6017 6563 -19 2 1951 234 0 0 0 chr1 179170142 179170168 -18025264 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1951 1162 237 63 4 chr1 179170168 179170439 -18024993 + L1_Mur2 LINE L1 5462 5748 -129 2 1951 337 210 146 27 chr1 179170510 179170673 -18024759 + L1M5 LINE L1 3850 4029 -2117 2 1951 280 327 305 7 chr1 179170769 179170923 -18024509 + RMER30 DNA MER1_type 2 201 -1 2 1951 22 0 0 0 chr1 179171241 179171263 -18024169 + AT_rich Low_complexity Low_complexity 1 22 0 2 1951 544 223 100 0 chr1 179171328 179171458 -18023974 + ID_B1 SINE B4 79 221 -3 2 1951 233 210 62 31 chr1 179172569 179172633 -18022799 + MTC LTR MaLR 342 407 -14 2 1951 7355 48 6 4 chr1 179172642 179173646 -18021786 + L1_Mus1 LINE L1 5522 6527 -40 2 1951 528 126 4 14 chr1 179173646 179173764 -18021668 + B1_Mm SINE Alu 34 148 0 2 243 242 312 56 6 chr1 179175415 179175576 -18019856 + HAL1 LINE L1 1407 1575 -932 2 1952 1087 43 58 0 chr1 179175863 179176001 -18019431 + B1_Mus2 SINE Alu 2 147 0 2 1952 873 250 110 49 chr1 179177268 179177458 -18017974 + L1ME1 LINE L1 5552 5770 -409 2 1952 456 309 22 0 chr1 179177458 179177597 -18017835 + B1F1 SINE Alu 1 142 -7 2 1952 873 250 110 49 chr1 179177597 179177996 -18017436 + L1ME1 LINE L1 5771 6177 -2 2 1952 21 0 0 0 chr1 179178249 179178270 -18017162 + AT_rich Low_complexity Low_complexity 1 21 0 2 1952 21 36 0 0 chr1 179178326 179178354 -18017078 + AT_rich Low_complexity Low_complexity 1 28 0 2 1952 537 16 0 0 chr1 179178922 179178984 -18016448 + (CTG)n Simple_repeat Simple_repeat 3 64 0 2 1952 345 326 94 11 chr1 179179563 179179743 -18015689 - MIRb SINE MIR -66 202 8 2 1952 257 128 21 0 chr1 179180980 179181027 -18014405 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1952 282 194 0 0 chr1 179181245 179181317 -18014115 + GA-rich Low_complexity Low_complexity 1 72 0 2 1952 325 217 25 131 chr1 179183294 179183416 -18012016 + PB1D10 SINE Alu 1 109 -8 2 1952 206 183 33 57 chr1 179184977 179185099 -18010333 + (TA)n Simple_repeat Simple_repeat 2 120 0 2 1952 201 324 29 0 chr1 179185180 179185248 -18010184 + MIR SINE MIR 168 237 -25 2 1952 499 211 108 8 chr1 179186062 179186191 -18009241 + B1F1 SINE Alu 1 142 -7 2 1952 204 97 0 0 chr1 179187629 179187660 -18007772 + (GGGTG)n Simple_repeat Simple_repeat 4 34 0 2 1952 217 130 0 53 chr1 179187790 179187847 -18007585 + C-rich Low_complexity Low_complexity 6 59 0 2 1952 28 29 0 0 chr1 179188102 179188137 -18007295 + GC_rich Low_complexity Low_complexity 1 35 0 2 1952 24 0 0 0 chr1 179188165 179188189 -18007243 + GC_rich Low_complexity Low_complexity 1 24 0 2 1952 278 266 23 64 chr1 179188189 179188362 -18007070 + G-rich Low_complexity Low_complexity 5 170 0 2 1952 207 244 0 0 chr1 179188372 179188413 -18007019 + C-rich Low_complexity Low_complexity 1 41 0 2 1952 195 146 0 0 chr1 179188507 179188548 -18006884 + (CGG)n Simple_repeat Simple_repeat 2 42 0 2 1952 213 103 0 65 chr1 179188547 179188609 -18006823 + GA-rich Low_complexity Low_complexity 1 58 0 2 1952 378 214 14 0 chr1 179190506 179190576 -18004856 + ID4_ SINE ID 10 80 -3 2 1952 481 236 18 9 chr1 179191496 179191607 -18003825 + B3A SINE B2 4 115 -83 2 1952 22 0 0 0 chr1 179191633 179191655 -18003777 + AT_rich Low_complexity Low_complexity 1 22 0 2 1952 339 25 0 0 chr1 179191821 179191861 -18003571 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1952 270 0 0 0 chr1 179191861 179191890 -18003542 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1952 397 250 57 9 chr1 179191953 179192058 -18003374 - ID_B1 SINE B4 -33 191 82 2 1952 345 296 106 58 chr1 179192729 179192937 -18002495 - MLT1A0 LTR MaLR -4 361 144 2 1952 1065 251 115 6 chr1 179193207 179193629 -18001803 - L1MA4 LINE L1 -122 6034 5580 2 1952 212 233 0 121 chr1 179193797 179193880 -18001552 - B4A SINE B4 -219 73 1 2 1952 628 244 107 21 chr1 179193898 179194141 -18001291 - L1_Mur3 LINE L1 -444 5436 5173 2 1952 322 282 99 9 chr1 179194142 179194253 -18001179 - MLT1A0 LTR MaLR -207 158 38 2 1952 779 75 0 0 chr1 179194253 179194359 -18001073 + B1_Mm SINE Alu 42 147 0 2 1952 269 328 79 21 chr1 179194605 179194745 -18000687 + MIRb SINE MIR 3 150 -118 2 1952 2046 276 59 49 chr1 179195069 179195795 -17999637 + MTE-int LTR MaLR 511 1540 -40 2 1952 501 291 67 0 chr1 179195807 179195941 -17999491 + MTEb LTR MaLR 3 145 -234 2 1952 237 340 107 13 chr1 179195941 179195956 -17999476 + MT2A LTR ERVL 3 165 -368 2 1952 638 25 12 0 chr1 179195971 179196051 -17999381 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1952 543 247 103 0 chr1 179196051 179196197 -17999235 + MTEb LTR MaLR 215 375 -4 2 1952 335 281 54 67 chr1 179196222 179196371 -17999061 + MLT1A LTR MaLR 7 153 -212 2 1952 350 233 128 0 chr1 179196386 179196472 -17998960 + PB1D10 SINE Alu 12 108 -9 3 1952 445 338 0 0 chr1 179196543 179196691 -17998741 + MLT1A LTR MaLR 221 368 -6 2 1952 189 0 0 0 chr1 179197740 179197761 -17997671 + (TTA)n Simple_repeat Simple_repeat 3 23 0 3 1952 387 359 14 7 chr1 179198734 179198880 -17996552 - MER45A DNA Tip100 -1 177 31 3 1952 399 236 0 0 chr1 179200146 179200218 -17995214 + B1_Mur2 SINE Alu 28 99 -50 3 1952 306 0 0 0 chr1 179200391 179200425 -17995007 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1952 314 310 11 22 chr1 179200608 179200699 -17994733 - ID4 SINE ID -61 91 2 3 1952 182 360 89 10 chr1 179200735 179200836 -17994596 - MIRb SINE MIR -141 127 19 3 1952 279 290 10 5 chr1 179201129 179201233 -17994199 + ID4_ SINE ID 30 134 -18 3 1952 4397 146 66 76 chr1 179201258 179201480 -17993952 - RMER19B LTR ERVK -13 889 661 3 1952 3921 140 82 47 chr1 179201480 179202261 -17993171 + RLTR13C2 LTR ERVK 1 808 0 3 1952 4397 146 66 76 chr1 179202261 179202724 -17992708 - RMER19B LTR ERVK -242 660 165 3 1952 189 0 0 0 chr1 179202724 179202745 -17992687 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1952 4397 146 66 76 chr1 179202745 179202956 -17992476 - RMER19B LTR ERVK -738 164 1 3 1952 235 254 32 0 chr1 179203042 179203105 -17992327 - MTC-int LTR MaLR -8 1250 1186 3 1952 2554 154 29 2 chr1 179203131 179203541 -17991891 + MTC LTR MaLR 1 421 0 3 1952 474 220 0 0 chr1 179203830 179203921 -17991511 + MTC LTR MaLR 230 320 -101 3 1952 915 95 86 21 chr1 179204945 179205085 -17990347 - B1_Mur4 SINE Alu 0 150 2 3 1952 683 228 27 86 chr1 179205487 179205674 -17989758 - MamSINE1 SINE tRNA -74 216 41 3 1952 263 366 0 14 chr1 179206641 179206713 -17988719 + ID2 SINE ID 3 73 -10 3 1952 256 255 53 92 chr1 179208212 179208288 -17987144 - PB1D10 SINE Alu -65 84 14 3 1952 656 258 48 13 chr1 179208408 179208646 -17986786 - MER5C DNA MER1_type -63 250 5 3 1952 245 311 16 32 chr1 179209351 179209477 -17985955 - L1ME3A LINE L1 -183 5990 5867 3 1952 273 263 48 39 chr1 179209488 179209591 -17985841 - MTEa LTR MaLR -23 356 253 3 1952 463 347 90 7 chr1 179209848 179209993 -17985439 + RSINE1 SINE B4 5 161 -4 3 1952 504 0 0 0 chr1 179209994 179210050 -17985382 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 3 1952 228 288 90 8 chr1 179210079 179210212 -17985220 - L1ME3A LINE L1 -474 5766 5623 3 1952 270 0 0 0 chr1 179210215 179210245 -17985187 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1952 447 68 0 0 chr1 179210245 179210304 -17985128 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1952 21 0 0 0 chr1 179210560 179210581 -17984851 + AT_rich Low_complexity Low_complexity 1 21 0 3 1952 338 202 112 0 chr1 179210760 179210849 -17984583 + L1M1 LINE L1 5712 5810 -490 3 1952 426 220 46 0 chr1 179210862 179210971 -17984461 + L1MA6 LINE L1 5885 5998 -302 3 1952 3742 158 64 53 chr1 179210976 179211752 -17983680 + RMER21A LTR ERV1 94 878 -69 3 1952 1036 247 18 48 chr1 179211848 179212120 -17983312 - RMER15 LTR ERVL -290 285 22 3 1952 231 36 0 0 chr1 179212131 179212159 -17983273 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1952 633 270 59 39 chr1 179212604 179212808 -17982624 + MLT2B1 LTR ERVL 3 210 -310 3 1952 652 260 177 6 chr1 179213011 179213327 -17982105 + MTEb LTR MaLR 3 372 -7 3 1952 273 314 82 46 chr1 179213348 179213542 -17981890 + MLT2B1 LTR ERVL 276 476 -78 3 1952 362 331 24 0 chr1 179213699 179213823 -17981609 - RSINE1 SINE B4 -29 136 10 3 1952 275 45 45 0 chr1 179213962 179214006 -17981426 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 3 1952 192 40 0 0 chr1 179214009 179214034 -17981398 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1952 792 273 20 75 chr1 179214038 179214383 -17981049 - L1ME3A LINE L1 -1310 4836 4511 3 1952 350 265 0 0 chr1 179214446 179214514 -17980918 + ID4 SINE ID 6 73 -10 3 1952 314 291 51 0 chr1 179214514 179214525 -17980907 + ID SINE ID 6 88 -136 3 1952 233 309 71 0 chr1 179214707 179214833 -17980599 - L1ME3A LINE L1 -1713 4433 4299 3 1952 690 312 55 55 chr1 179214891 179215254 -17980178 + MT2A LTR ERVL 6 368 -165 3 1952 1023 168 108 0 chr1 179215331 179215359 -17980073 - URR1B DNA MER1_type 0 225 188 3 1952 522 114 0 0 chr1 179215359 179215438 -17979994 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1952 1023 168 108 0 chr1 179215438 179215612 -17979820 - URR1B DNA MER1_type -38 187 2 3 1952 870 266 47 18 chr1 179215923 179216395 -17979037 + MLT1E1A LTR MaLR 44 648 -32 3 1952 5963 176 29 45 chr1 179217618 179220001 -17975431 - Lx2B LINE L1 -263 6737 4407 3 1952 737 228 0 14 chr1 179220769 179220907 -17974525 - B1_Mur1 SINE Alu -1 148 13 3 1952 231 36 0 0 chr1 179220933 179220961 -17974471 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1952 467 337 18 41 chr1 179220962 179221132 -17974300 - B3A SINE B2 -27 171 6 3 1952 371 259 145 59 chr1 179221238 179221390 -17974042 + RSINE1 SINE B4 1 165 0 3 1952 29 28 0 0 chr1 179221392 179221428 -17974004 + AT_rich Low_complexity Low_complexity 1 36 0 3 1952 22 35 0 0 chr1 179221488 179221517 -17973915 + AT_rich Low_complexity Low_complexity 1 29 0 3 1952 267 333 77 91 chr1 179221781 179221989 -17973443 + MTEa LTR MaLR 61 265 -114 3 1952 235 229 118 59 chr1 179221926 179222028 -17973404 + MT2A LTR ERVL 346 453 -80 3 1952 531 0 0 0 chr1 179222039 179222098 -17973334 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1952 387 0 0 0 chr1 179222098 179222140 -17973292 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1952 572 253 62 38 chr1 179222602 179222762 -17972670 + RSINE1 SINE B4 2 165 0 3 1952 23 0 0 0 chr1 179222767 179222790 -17972642 + AT_rich Low_complexity Low_complexity 1 23 0 3 1952 26 0 0 0 chr1 179223522 179223548 -17971884 + AT_rich Low_complexity Low_complexity 1 26 0 3 1952 603 40 0 0 chr1 179224013 179224087 -17971345 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 3 1952 994 238 25 14 chr1 179224113 179224363 -17971069 - B4A SINE B4 0 292 44 3 1952 311 65 0 21 chr1 179224369 179224416 -17971016 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 3 1952 236 186 23 0 chr1 179224440 179224483 -17970949 - ID SINE ID -150 74 31 3 1952 225 0 0 0 chr1 179225761 179225786 -17969646 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 3 1952 681 309 229 18 chr1 179226067 179226512 -17968920 - MLT1K LTR MaLR -56 539 1 3 1952 216 220 85 0 chr1 179226548 179226607 -17968825 - ID4_ SINE ID -18 65 2 3 1952 276 279 15 0 chr1 179226713 179226781 -17968651 - ID4 SINE ID 0 83 15 3 1952 251 341 36 15 chr1 179226785 179226922 -17968510 - B1F SINE Alu -9 140 1 3 1952 8343 41 2 2 chr1 179227308 179228390 -17967042 - L1Md_F2 LINE L1 0 6582 5501 3 1952 1222 34 0 7 chr1 179229403 179229551 -17965881 + B1_Mus2 SINE Alu 1 147 0 3 1952 339 299 8 57 chr1 179229802 179229926 -17965506 - RMER10B LTR ERVL -12 386 269 3 1952 445 250 106 53 chr1 179230184 179230429 -17965003 + L1MA8 LINE L1 6013 6270 -21 3 1952 3228 164 22 33 chr1 179230926 179231507 -17963925 + RMER15 LTR ERVL 1 575 0 3 1952 1149 64 0 0 chr1 179232290 179232431 -17963001 + B1_Mus1 SINE Alu 2 142 -6 3 1952 978 76 0 0 chr1 179232433 179232565 -17962867 + (GAA)n Simple_repeat Simple_repeat 3 134 0 3 1952 747 62 0 0 chr1 179232571 179232668 -17962764 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 3 1952 754 118 104 0 chr1 179232677 179232812 -17962620 + B1_Mur4 SINE Alu 2 150 0 3 1952 929 146 0 6 chr1 179232815 179232981 -17962451 + GA-rich Low_complexity Low_complexity 2 166 0 3 1952 234 0 0 0 chr1 179232981 179233007 -17962425 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 3 1952 916 119 11 22 chr1 179233007 179233187 -17962245 + GA-rich Low_complexity Low_complexity 3 180 0 3 1952 697 297 63 16 chr1 179233311 179233564 -17961868 - B4A SINE B4 -23 269 5 3 1952 207 200 0 22 chr1 179233674 179233720 -17961712 + CT-rich Low_complexity Low_complexity 6 50 0 3 1952 806 39 0 0 chr1 179233862 179233966 -17961466 - B1_Mus2 SINE Alu -2 145 42 3 1952 266 130 0 53 chr1 179233918 179233975 -17961457 - 4.5SRNA scRNA scRNA -8 86 33 3 1952 264 0 0 159 chr1 179233993 179234125 -17961307 + (CTCTG)n Simple_repeat Simple_repeat 5 115 0 3 1952 394 83 0 32 chr1 179234126 179234188 -17961244 - B1_Mur4 SINE Alu -90 60 1 3 1952 274 344 20 40 chr1 179235804 179235838 -17959594 - ID_B1 SINE B4 -111 113 16 3 1952 281 318 0 0 chr1 179235838 179235904 -17959528 - ID4_ SINE ID -2 81 16 3 1952 231 308 0 44 chr1 179235848 179235916 -17959516 - tRNA-Ala-GCY_ tRNA tRNA -10 65 1 3 1952 260 305 77 33 chr1 179236631 179236771 -17958661 - MIRc SINE MIR -12 256 113 3 1952 1071 64 0 0 chr1 179236771 179236911 -17958521 + (GGGAGA)n Simple_repeat Simple_repeat 5 144 0 3 1952 260 305 77 33 chr1 179236911 179236953 -17958479 - MIRc SINE MIR -156 112 68 3 1952 203 244 0 0 chr1 179237330 179237375 -17958057 + (TATG)n Simple_repeat Simple_repeat 2 46 0 3 1952 267 31 0 0 chr1 179238225 179238257 -17957175 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 3 1952 353 278 47 26 chr1 179239001 179239128 -17956304 + MIRc SINE MIR 35 165 -43 3 1952 288 293 30 20 chr1 179239463 179239580 -17955852 - MIRb SINE MIR -59 149 32 3 1952 1020 299 35 12 chr1 179239655 179240000 -17955432 + MTEa LTR MaLR 3 355 -24 3 1952 289 262 179 0 chr1 179240364 179240448 -17954984 + B1_Mur2 SINE Alu 8 106 -43 3 1952 225 191 0 45 chr1 179240449 179240515 -17954917 + A-rich Low_complexity Low_complexity 2 64 0 3 1952 1055 255 22 33 chr1 179241049 179241325 -17954107 - B4A SINE B4 -18 274 2 3 1952 284 326 71 21 chr1 179241440 179241581 -17953851 - B1F2 SINE Alu -1 148 1 3 1952 263 297 16 0 chr1 179241783 179241847 -17953585 + ID4_ SINE ID 19 83 0 3 1952 260 187 91 26 chr1 179241847 179241860 -17953572 + B4 SINE B4 19 100 -192 3 1952 588 29 0 0 chr1 179241935 179242005 -17953427 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1952 722 214 0 0 chr1 179242303 179242443 -17952989 + B1_Mur2 SINE Alu 1 140 -9 3 1952 991 190 173 14 chr1 179243024 179243307 -17952125 - ORR1A4 LTR MaLR 0 329 2 4 1952 324 327 9 17 chr1 179243331 179243446 -17951986 - PB1 SINE Alu -2 125 12 4 1952 189 0 0 0 chr1 179243654 179243675 -17951757 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 4 1952 247 250 143 13 chr1 179243681 179243758 -17951674 - PB1 SINE Alu -19 98 12 4 1952 415 339 35 29 chr1 179243952 179244125 -17951307 - ORR1E LTR MaLR -185 174 1 4 1952 1195 111 38 22 chr1 179245225 179245409 -17950023 + B2_Mm2 SINE B2 1 187 -8 4 1952 219 263 0 0 chr1 179245461 179245518 -17949914 - B4A SINE B4 -235 57 1 4 1952 324 120 0 0 chr1 179245523 179245573 -17949859 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1952 574 255 83 91 chr1 179245599 179245875 -17949557 - B4A SINE B4 -18 274 1 4 1952 596 251 19 43 chr1 179246603 179246764 -17948668 + ORR1E LTR MaLR 4 136 -223 4 1952 545 264 102 52 chr1 179247463 179247863 -17947569 + MLT1C LTR MaLR 2 465 -2 4 1952 320 291 81 15 chr1 179247881 179248017 -17947415 - Kanga2_a DNA Tc2 -510 378 234 4 1952 267 313 8 97 chr1 179248075 179248199 -17947233 + PB1D10 SINE Alu 1 113 -7 4 1952 272 189 18 36 chr1 179248204 179248259 -17947173 + ID4_ SINE ID 2 55 -28 4 1952 382 195 26 0 chr1 179248340 179248417 -17947015 + MLT1C LTR MaLR 3 81 -386 4 1952 22 0 0 0 chr1 179248446 179248468 -17946964 + GC_rich Low_complexity Low_complexity 1 22 0 4 1952 369 230 23 11 chr1 179249042 179249130 -17946302 + PB1 SINE Alu 32 120 -7 4 1952 950 201 88 33 chr1 179249629 179249902 -17945530 - RCHARR1 DNA MER1_type -7 967 680 4 1952 316 307 130 45 chr1 179249999 179250268 -17945164 - B4A SINE B4 0 292 1 4 1952 1075 153 25 5 chr1 179250268 179250472 -17944960 - RCHARR1 DNA MER1_type -281 693 486 4 1952 204 179 0 0 chr1 179250472 179250511 -17944921 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1952 888 272 52 7 chr1 179250523 179250793 -17944639 - B4 SINE B4 -8 284 3 4 1952 1456 240 55 36 chr1 179250794 179251214 -17944218 - RCHARR1 DNA MER1_type -477 497 70 4 1952 498 259 14 29 chr1 179251292 179251431 -17944001 + RSINE1 SINE B4 21 157 -8 4 1952 464 204 65 0 chr1 179251845 179251953 -17943479 - PB1D10 SINE Alu -2 115 1 4 1952 199 278 139 0 chr1 179252451 179252523 -17942909 + MIRb SINE MIR 108 189 -79 4 1952 357 82 40 27 chr1 179253935 179254010 -17941422 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 4 1952 1308 14 0 0 chr1 179254010 179254156 -17941276 - B1_Mus2 SINE Alu -1 146 1 4 1952 189 0 0 0 chr1 179254773 179254794 -17940638 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 4 1952 825 249 11 26 chr1 179255015 179255205 -17940227 + B3 SINE B2 26 212 -4 4 1952 1504 68 15 20 chr1 179255557 179255753 -17939679 - B2_Mm2 SINE B2 0 195 1 4 1952 236 159 26 104 chr1 179255873 179255950 -17939482 + ID2 SINE ID 2 72 -11 4 1952 240 342 0 0 chr1 179256349 179256425 -17939007 + ID2 SINE ID 1 76 -7 4 1952 1620 144 28 109 chr1 179256425 179256783 -17938649 + ORR1A4 LTR MaLR 1 329 0 4 1952 850 168 21 0 chr1 179256855 179256998 -17938434 - B1_Mur4 SINE Alu 0 150 5 4 1952 543 250 32 154 chr1 179257121 179257170 -17938262 - MTEa LTR MaLR -5 374 324 4 1952 702 201 20 53 chr1 179257170 179257322 -17938110 + B1_Mur1 SINE Alu 2 148 -1 4 1952 543 250 32 154 chr1 179257322 179257518 -17937914 - MTEa LTR MaLR -56 323 159 4 1952 1787 212 22 17 chr1 179257524 179257927 -17937505 + MTD LTR MaLR 1 405 -14 4 1952 563 265 0 0 chr1 179257948 179258080 -17937352 - MTEa LTR MaLR -245 134 3 4 1952 372 97 1 5 chr1 179258563 179258621 -17936811 - MTEb LTR MaLR 0 379 325 4 1952 1386 28 0 16 chr1 179258621 179258803 -17936629 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 4 1952 1163 74 0 0 chr1 179259126 179259274 -17936158 + B1_Mus1 SINE Alu 1 148 0 4 1952 3153 27 220 0 chr1 179259375 179259779 -17935653 - MT2_Mm LTR ERVL 0 493 1 4 1952 3345 55 0 2 chr1 179260163 179260564 -17934868 - MTB LTR MaLR 0 400 1 4 1952 230 331 63 44 chr1 179261367 179261525 -17933907 - MER20 DNA MER1_type -26 193 33 4 1952 1589 125 5 0 chr1 179261606 179261830 -17933602 + URR1B DNA MER1_type 1 225 0 4 1952 207 0 0 0 chr1 179262698 179262721 -17932711 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1952 282 311 9 0 chr1 179263102 179263208 -17932224 + MLT2B3 LTR ERVL 1 107 -447 4 1952 268 295 13 13 chr1 179263484 179263563 -17931869 - ID4 SINE ID -3 80 2 4 1952 576 265 45 33 chr1 179263687 179263936 -17931496 - L1MA6 LINE L1 0 6300 6045 4 1952 2685 173 38 12 chr1 179266010 179266512 -17928920 + RMER19B LTR ERVK 388 902 0 4 1952 697 137 23 0 chr1 179266859 179266990 -17928442 - URR1B DNA MER1_type 0 225 92 4 1952 1046 43 0 0 chr1 179267031 179267170 -17928262 + B1_Mm SINE Alu 9 147 0 4 1952 342 0 0 0 chr1 179267170 179267208 -17928224 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1952 676 179 49 14 chr1 179267740 179267882 -17927550 + URR1A DNA MER1_type 80 226 0 4 1952 226 318 0 0 chr1 179268504 179268567 -17926865 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 4 1952 333 0 0 0 chr1 179269509 179269546 -17925886 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1952 1280 27 0 0 chr1 179269546 179269692 -17925740 - B1_Mm SINE Alu 0 147 2 4 1952 827 121 88 35 chr1 179269749 179269920 -17925512 - URR1B DNA MER1_type 0 225 46 4 1952 533 244 17 0 chr1 179271032 179271147 -17924285 + PB1D9 SINE Alu 4 120 0 4 1952 490 196 41 0 chr1 179271356 179271453 -17923979 + Tigger7 DNA MER2_type 205 305 -2186 4 1952 407 259 8 8 chr1 179271487 179271604 -17923828 + Tigger7 DNA MER2_type 2206 2322 -169 4 1952 198 0 0 0 chr1 179272098 179272120 -17923312 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1952 1150 68 0 33 chr1 179272128 179272281 -17923151 - B1_Mus1 SINE Alu 0 148 1 4 1952 1494 287 122 49 chr1 179272302 179273173 -17922259 + Charlie1a DNA MER1_type 463 1396 -59 4 1952 1209 75 7 4 chr1 179273736 179274017 -17921415 + (TTTC)n Simple_repeat Simple_repeat 1 282 0 4 1952 735 229 72 26 chr1 179274091 179274284 -17921148 - B3A SINE B2 -2 214 13 4 1952 270 284 10 59 chr1 179274971 179275072 -17920360 + B1F SINE Alu 1 96 -53 4 1952 242 116 23 0 chr1 179275076 179275119 -17920313 + (CAGT)n Simple_repeat Simple_repeat 4 47 0 4 1952 256 196 69 35 chr1 179275176 179275234 -17920198 + RSINE1 SINE B4 75 134 -31 4 1952 360 0 0 0 chr1 179275240 179275280 -17920152 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 1952 366 229 0 0 chr1 179275376 179275446 -17919986 - ID4_ SINE ID -11 72 3 4 1952 546 16 0 0 chr1 179276250 179276313 -17919119 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 4 1952 209 226 15 61 chr1 179276317 179276383 -17919049 + GA-rich Low_complexity Low_complexity 5 67 0 4 1952 345 224 59 39 chr1 179276396 179276498 -17918934 - MLT1L LTR MaLR 0 610 507 4 1952 564 227 53 110 chr1 179277868 179278096 -17917336 - B3A SINE B2 0 216 2 4 1952 456 294 45 73 chr1 179278743 179278963 -17916469 + Charlie23a DNA MER1_type 48 261 -78 4 1952 350 296 23 70 chr1 179279105 179279276 -17916156 + RSINE1 SINE B4 3 165 0 4 1952 180 179 0 0 chr1 179281007 179281046 -17914386 + GA-rich Low_complexity Low_complexity 1 39 0 4 1952 1378 85 11 0 chr1 179281759 179281947 -17913485 + B2_Mm1t SINE B2 2 191 -2 4 1952 288 0 0 0 chr1 179282856 179282888 -17912544 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1952 595 172 102 66 chr1 179283038 179283093 -17912339 + B1F SINE Alu 1 53 -96 4 1952 2778 42 62 0 chr1 179283093 179283429 -17912003 + IAPEY2_LTR LTR ERVK 1 357 0 4 1952 595 172 102 66 chr1 179283429 179283510 -17911922 + B1F SINE Alu 54 142 -7 4 1952 392 321 35 28 chr1 179283514 179283655 -17911777 + RSINE1 SINE B4 1 142 -23 4 1952 455 82 14 0 chr1 179283667 179283740 -17911692 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1952 939 145 212 16 chr1 179286103 179286292 -17909140 - URR1A DNA MER1_type 0 226 1 4 1952 237 269 0 0 chr1 179286806 179286858 -17908574 + GA-rich Low_complexity Low_complexity 1 52 0 4 1952 331 239 0 0 chr1 179286922 179286989 -17908443 - PB1D10 SINE Alu -38 79 13 4 1952 264 30 0 0 chr1 179287107 179287140 -17908292 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1952 1056 107 0 0 chr1 179287153 179287508 -17907924 + (CA)n Simple_repeat Simple_repeat 1 355 0 4 1952 1252 256 112 14 chr1 179287515 179287943 -17907489 - RMER5 LTR ERV1 -22 512 43 4 1952 1132 101 0 0 chr1 179288801 179288960 -17906472 + B2_Mm2 SINE B2 1 159 -36 4 1952 240 59 0 0 chr1 179288960 179288994 -17906438 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 4 1952 660 232 60 33 chr1 179289043 179289226 -17906206 + B3A SINE B2 11 198 0 4 1952 715 267 17 28 chr1 179289823 179290004 -17905428 + B3A SINE B2 2 180 -18 4 1952 200 171 0 0 chr1 179290189 179290224 -17905208 - MIRc SINE MIR -119 149 115 4 1952 270 0 0 0 chr1 179290225 179290255 -17905177 + (TTGG)n Simple_repeat Simple_repeat 4 33 0 4 1952 321 321 68 15 chr1 179290357 179290490 -17904942 - B1F SINE Alu -1 148 9 4 1952 732 232 95 81 chr1 179291062 179291231 -17904201 - B3 SINE B2 0 216 40 4 1952 288 0 0 0 chr1 179291231 179291263 -17904169 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1952 1096 60 0 0 chr1 179291263 179291397 -17904035 - B1_Mus1 SINE Alu -13 135 2 4 1952 732 232 95 81 chr1 179291397 179291437 -17903995 - B3 SINE B2 -177 39 4 4 1952 947 160 128 10 chr1 179291467 179291663 -17903769 - URR1A DNA MER1_type -6 220 2 4 1952 279 0 0 0 chr1 179291684 179291715 -17903717 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1952 702 78 39 0 chr1 179292043 179292145 -17903287 - ORR1A2 LTR MaLR 0 327 222 4 1952 3063 57 36 5 chr1 179292145 179292533 -17902899 - MTB LTR MaLR 0 400 1 4 1952 399 98 0 0 chr1 179295455 179295516 -17899916 + (TATG)n Simple_repeat Simple_repeat 3 63 0 5 1952 498 61 0 0 chr1 179295532 179295598 -17899834 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1952 279 203 0 0 chr1 179295608 179295677 -17899755 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1952 732 250 7 0 chr1 179295692 179295840 -17899592 - RSINE1 SINE B4 -6 159 11 5 1952 186 43 0 0 chr1 179297868 179297891 -17897541 + (TTG)n Simple_repeat Simple_repeat 1 23 0 5 1952 787 174 0 7 chr1 179297891 179298030 -17897402 - ID_B1 SINE B4 -13 211 74 5 1952 1885 156 92 0 chr1 179298352 179298698 -17896734 - ORR1C1 LTR MaLR 0 378 1 5 1952 1077 128 0 0 chr1 179298894 179299058 -17896374 + B2_Mm2 SINE B2 1 164 -31 5 1952 266 264 56 96 chr1 179299061 179299258 -17896174 - L1MC5 LINE L1 -30 7931 7743 5 1952 23 0 0 0 chr1 179299472 179299495 -17895937 + AT_rich Low_complexity Low_complexity 1 23 0 5 1952 227 79 0 26 chr1 179299496 179299535 -17895897 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1952 271 261 21 21 chr1 179299559 179299653 -17895779 - L1MA4A LINE L1 -392 5911 5818 5 1952 291 301 118 0 chr1 179299665 179299758 -17895674 - RSINE1 SINE B4 -1 164 61 5 1952 447 287 101 18 chr1 179299921 179300222 -17895210 + MTEb LTR MaLR 24 379 0 5 1952 246 259 103 23 chr1 179300268 179300355 -17895077 - L1MC5 LINE L1 -599 7362 7269 5 1952 853 243 146 61 chr1 179300581 179300923 -17894509 + MTEb LTR MaLR 6 376 -3 5 1952 3278 61 2 0 chr1 179300943 179301338 -17894094 + MTA_Mm LTR MaLR 1 396 0 5 1952 387 0 0 0 chr1 179301354 179301397 -17894035 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1952 234 0 0 0 chr1 179302871 179302897 -17892535 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1952 219 36 0 0 chr1 179303293 179303321 -17892111 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1952 205 156 44 0 chr1 179303897 179303942 -17891490 + T-rich Low_complexity Low_complexity 2 48 0 5 1952 185 328 102 42 chr1 179304253 179304371 -17891061 + L3 LINE CR1 3874 3998 -491 5 1952 447 248 91 83 chr1 179304537 179304680 -17890752 + L1MA4A LINE L1 5662 5801 -502 5 1952 810 58 0 0 chr1 179304680 179304784 -17890648 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 5 1952 447 248 91 83 chr1 179304784 179304904 -17890528 + L1MA4A LINE L1 5802 5927 -376 5 1952 3496 257 126 24 chr1 179305083 179306109 -17889323 + Lx8 LINE L1 6175 7308 -165 5 30 2429 163 17 2 chr1 179306109 179306520 -17888912 + MTC LTR MaLR 5 421 0 5 1953 3496 257 126 24 chr1 179306520 179306544 -17888888 + Lx8 LINE L1 7309 7336 -137 5 1953 426 69 0 0 chr1 179306544 179306602 -17888830 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1953 3496 257 126 24 chr1 179306602 179306723 -17888709 + Lx8 LINE L1 7337 7466 -7 5 1953 346 290 55 27 chr1 179308509 179308619 -17886813 + PB1D9 SINE Alu 1 113 -7 5 1953 225 358 131 23 chr1 179308991 179309251 -17886181 + L2a LINE L2 3098 3385 -41 5 1953 935 142 0 6 chr1 179309367 179309530 -17885902 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 5 1953 621 200 0 9 chr1 179309531 179309642 -17885790 - B1_Mur1 SINE Alu -21 128 19 5 1953 243 287 64 18 chr1 179310340 179310450 -17884982 - MIR SINE MIR -47 215 101 5 1953 440 148 35 14 chr1 179310515 179310659 -17884773 + (TCTG)n Simple_repeat Simple_repeat 2 148 0 5 1953 250 246 43 14 chr1 179310660 179310730 -17884702 - ID4_ SINE ID -11 72 1 5 1953 323 335 27 76 chr1 179311082 179311223 -17884209 + MIRb SINE MIR 48 185 -83 5 1953 1465 221 20 68 chr1 179311223 179311621 -17883811 - MTE2b LTR MaLR 0 379 1 5 1953 323 335 27 76 chr1 179311621 179311663 -17883769 + MIRb SINE MIR 186 222 -46 5 1953 600 115 0 0 chr1 179311859 179311972 -17883460 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 5 1953 450 0 0 0 chr1 179312746 179312796 -17882636 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1953 272 289 86 17 chr1 179313284 179313400 -17882032 + B1F SINE Alu 21 144 -5 5 1953 253 292 0 0 chr1 179313400 179313472 -17881960 + ID4_ SINE ID 2 73 -10 5 1953 468 0 0 0 chr1 179313939 179313991 -17881441 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1953 23 0 0 0 chr1 179314029 179314052 -17881380 + AT_rich Low_complexity Low_complexity 1 23 0 5 1953 272 217 13 92 chr1 179315546 179315622 -17879810 - B4 SINE B4 -4 288 219 5 1953 853 280 14 36 chr1 179315820 179316042 -17879390 - B4 SINE B4 -74 218 2 5 1953 267 256 35 11 chr1 179317476 179317563 -17877869 + RLTR40 LTR ERVK 19 107 -710 5 1953 4726 73 13 0 chr1 179317584 179318202 -17877230 - L1_Mus3 LINE L1 -3 6635 6010 5 1953 807 141 35 17 chr1 179318225 179318398 -17877034 + RLTR40 LTR ERVK 106 281 -536 5 1953 222 208 0 0 chr1 179318435 179318488 -17876944 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1953 356 229 229 18 chr1 179318521 179318748 -17876684 + RLTR40 LTR ERVK 492 766 -51 5 1953 355 265 38 67 chr1 179319234 179319421 -17876011 + L1MB7 LINE L1 5842 6030 -148 5 1953 395 318 18 0 chr1 179319516 179319626 -17875806 - PB1D10 SINE Alu 0 117 6 5 1953 452 212 8 0 chr1 179320148 179320280 -17875152 + (CA)n Simple_repeat Simple_repeat 1 133 0 5 1953 847 303 55 23 chr1 179320280 179320666 -17874766 - L1MA4 LINE L1 -372 5928 5568 5 1953 224 352 35 21 chr1 179321009 179321036 -17874396 + ID_B1 SINE B4 53 196 -28 5 1953 395 313 0 0 chr1 179321036 179321151 -17874281 + B1F SINE Alu 4 118 -31 5 1953 297 0 0 0 chr1 179321162 179321195 -17874237 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 1953 23 0 0 0 chr1 179321741 179321764 -17873668 + AT_rich Low_complexity Low_complexity 1 23 0 5 1953 180 0 0 0 chr1 179321910 179321930 -17873502 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1953 1135 100 47 0 chr1 179321930 179322100 -17873332 - B2_Mm1a SINE B2 -14 179 2 5 1953 1265 249 50 39 chr1 179322370 179322734 -17872698 + MTEa LTR MaLR 9 376 -3 5 1953 374 283 99 8 chr1 179322989 179323110 -17872322 - B1F SINE Alu -8 141 10 5 1953 327 146 0 0 chr1 179324045 179324100 -17871332 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 5 1953 414 0 0 0 chr1 179325019 179325065 -17870367 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1953 2176 126 0 58 chr1 179325122 179325468 -17869964 - ORR1A3 LTR MaLR 0 326 1 5 1953 1136 82 0 13 chr1 179326025 179326174 -17869258 - B1_Mus2 SINE Alu 0 147 1 5 1953 314 274 52 122 chr1 179326845 179327074 -17868358 - MLT1K LTR MaLR -294 301 89 5 1953 246 313 88 29 chr1 179328662 179328833 -17866599 + ORR1E LTR MaLR 11 191 -168 5 1953 419 262 146 34 chr1 179328955 179329133 -17866299 + MER21B LTR ERV1 297 494 -369 5 1953 213 39 0 0 chr1 179329184 179329210 -17866222 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 5 1953 222 37 0 0 chr1 179330781 179330808 -17864624 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1953 513 146 0 0 chr1 179330808 179330931 -17864501 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 1953 360 64 0 0 chr1 179331100 179331147 -17864285 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1953 393 171 26 0 chr1 179331752 179331869 -17863563 + GA-rich Low_complexity Low_complexity 2 121 0 5 1953 414 0 0 0 chr1 179332668 179332714 -17862718 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1953 564 238 129 0 chr1 179332721 179332868 -17862564 - B3A SINE B2 -32 166 1 5 1953 216 97 0 0 chr1 179333054 179333085 -17862347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1953 987 236 94 76 chr1 179333372 179333767 -17861665 + L1MC3 LINE L1 6913 7314 -471 5 1953 536 53 27 0 chr1 179333905 179333980 -17861452 + (TTTTG)n Simple_repeat Simple_repeat 2 78 0 5 1953 959 314 57 17 chr1 179334135 179334605 -17860827 + L1MC3 LINE L1 7295 7783 -2 5 1953 610 280 71 56 chr1 179335903 179336100 -17859332 + B3A SINE B2 3 202 -14 5 1953 438 20 0 0 chr1 179336119 179336170 -17859262 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1953 840 358 23 25 chr1 179336246 179336684 -17858748 + HERV16-int LTR ERVL 1722 2158 -2838 5 1953 268 363 15 7 chr1 179337021 179337157 -17858275 + HERV16-int LTR ERVL 2539 2675 -2321 5 1953 777 342 43 3 chr1 179337240 179337568 -17857864 + HERV16-int LTR ERVL 3228 3568 -2193 5 1953 369 351 30 17 chr1 179338336 179338571 -17856861 + HERV16-int LTR ERVL 4176 4413 -1072 5 1953 3138 70 8 0 chr1 179339717 179340114 -17855318 - MTB LTR MaLR 0 400 1 5 1953 441 0 0 0 chr1 179342640 179342689 -17852743 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1953 333 0 0 0 chr1 179342689 179342725 -17852707 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1953 261 298 40 0 chr1 179342728 179342815 -17852617 - B1F2 SINE Alu -20 97 2 5 1953 1965 270 104 61 chr1 179342822 179343572 -17851860 - Lx8 LINE L1 -265 7208 6427 5 1953 1419 86 0 5 chr1 179343659 179343847 -17851585 - B2_Mm2 SINE B2 -8 187 1 5 1953 490 273 218 3 chr1 179344040 179344324 -17851108 + MLT1A0 LTR MaLR 28 372 -2 5 1953 305 210 215 0 chr1 179344324 179344475 -17850957 + L1M4 LINE L1 5640 5826 -2169 5 1953 732 238 60 6 chr1 179344626 179344808 -17850624 + B3A SINE B2 1 192 -6 5 1953 363 273 144 20 chr1 179344922 179345075 -17850357 + L1MB3 LINE L1 5434 5605 -563 5 1953 1091 245 47 80 chr1 179345163 179345589 -17849843 + L1MB3 LINE L1 5601 6012 -171 5 1953 2289 59 10 3 chr1 179345887 179346177 -17849255 - L1_Mus1 LINE L1 0 6567 6276 5 1953 21 0 0 0 chr1 179346254 179346275 -17849157 + AT_rich Low_complexity Low_complexity 1 21 0 5 1953 31 44 0 0 chr1 179346323 179346368 -17849064 + AT_rich Low_complexity Low_complexity 1 45 0 5 1953 358 274 58 29 chr1 179347355 179347494 -17847938 - MIRb SINE MIR -120 148 6 5 1953 921 236 140 0 chr1 179347552 179347802 -17847630 + B4A SINE B4 2 286 -6 5 1953 908 137 0 12 chr1 179347806 179347969 -17847463 + (GGAA)n Simple_repeat Simple_repeat 4 164 0 5 1953 539 241 41 28 chr1 179348581 179348726 -17846706 - B3A SINE B2 -51 147 1 5 1953 5541 58 23 3 chr1 179351132 179351825 -17843607 - L1Md_F2 LINE L1 0 6582 5876 5 1953 192 152 0 0 chr1 179352774 179352807 -17842625 + CT-rich Low_complexity Low_complexity 1 33 0 5 1953 24 0 0 0 chr1 179353170 179353194 -17842238 + AT_rich Low_complexity Low_complexity 1 24 0 5 1953 392 335 91 36 chr1 179353525 179353832 -17841600 - ORR1E LTR MaLR -11 348 25 5 1953 189 195 0 0 chr1 179354120 179354161 -17841271 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 5 1953 348 167 11 32 chr1 179354175 179354268 -17841164 + CT-rich Low_complexity Low_complexity 1 91 0 5 1953 716 270 107 29 chr1 179354745 179354989 -17840443 + B4A SINE B4 3 265 -27 6 1953 414 0 0 0 chr1 179354991 179355037 -17840395 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1953 250 239 15 15 chr1 179355316 179355384 -17840048 + MTEb LTR MaLR 292 359 -20 6 1953 391 250 26 5 chr1 179355807 179355936 -17839496 - L1MA9 LINE L1 -1 6290 6168 6 1953 757 193 7 24 chr1 179355947 179356241 -17839191 + (TATG)n Simple_repeat Simple_repeat 1 288 0 6 1953 269 193 0 34 chr1 179356261 179356320 -17839112 - L1MA9 LINE L1 -153 6159 6103 6 1953 699 283 30 0 chr1 179356326 179356524 -17838908 + B4A SINE B4 1 204 -88 6 1953 1030 300 52 0 chr1 179356547 179356857 -17838575 - MTE2b LTR MaLR -53 326 1 6 1953 304 250 202 8 chr1 179356992 179357121 -17838311 - MLT1J LTR MaLR -337 175 22 6 1953 21 0 0 0 chr1 179357253 179357274 -17838158 + AT_rich Low_complexity Low_complexity 1 21 0 6 1953 280 272 0 36 chr1 179357277 179357361 -17838071 + ID4 SINE ID 3 83 0 6 1953 263 93 23 0 chr1 179359132 179359175 -17836257 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 6 1953 22 0 0 0 chr1 179359541 179359563 -17835869 + AT_rich Low_complexity Low_complexity 1 22 0 6 1953 264 122 0 0 chr1 179359914 179359955 -17835477 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1953 305 133 33 0 chr1 179360474 179360534 -17834898 + (TATG)n Simple_repeat Simple_repeat 2 63 0 6 1953 411 21 0 0 chr1 179360973 179361021 -17834411 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1953 1146 99 76 22 chr1 179361439 179361624 -17833808 + B2_Mm2 SINE B2 1 195 0 6 1953 843 194 0 0 chr1 179361633 179361777 -17833655 + B1_Mur1 SINE Alu 1 144 -5 6 1953 21 0 0 0 chr1 179363049 179363070 -17832362 + AT_rich Low_complexity Low_complexity 1 21 0 6 1953 454 336 75 0 chr1 179363692 179363838 -17831594 + RSINE1 SINE B4 3 159 -6 6 1953 848 82 0 8 chr1 179364068 179364191 -17831241 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 6 1953 216 316 0 0 chr1 179364350 179364407 -17831025 - L2a LINE L2 -15 3411 3355 6 1953 236 272 0 100 chr1 179364663 179364753 -17830679 - B3A SINE B2 -16 182 102 6 1953 224 216 19 19 chr1 179364758 179364810 -17830622 - B2_Mm2 SINE B2 -143 52 1 6 1953 521 259 22 29 chr1 179365828 179365967 -17829465 - B1F2 SINE Alu -2 147 10 6 1953 363 141 0 0 chr1 179367143 179367207 -17828225 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 6 1953 249 214 27 67 chr1 179367525 179367600 -17827832 + ID4 SINE ID 1 72 -11 6 1953 26 0 0 0 chr1 179368262 179368288 -17827144 + AT_rich Low_complexity Low_complexity 1 26 0 6 1953 696 211 15 0 chr1 179368294 179368427 -17827005 + B1_Mur1 SINE Alu 2 136 -13 6 1953 369 0 0 0 chr1 179368722 179368763 -17826669 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1953 189 0 0 0 chr1 179368764 179368785 -17826647 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1953 573 15 0 0 chr1 179368785 179368850 -17826582 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1953 243 152 0 0 chr1 179370602 179370648 -17824784 + T-rich Low_complexity Low_complexity 1 46 0 6 1953 323 200 19 95 chr1 179370675 179370780 -17824652 + MT2B LTR ERVL 162 258 -343 6 1953 750 161 7 21 chr1 179370686 179370826 -17824606 + B1_Mur2 SINE Alu 11 148 -1 6 1953 237 119 0 0 chr1 179370956 179370998 -17824434 + (C)n Simple_repeat Simple_repeat 1 42 0 6 1953 237 132 0 0 chr1 179372052 179372090 -17823342 + (CCG)n Simple_repeat Simple_repeat 3 40 0 6 1953 282 76 36 48 chr1 179372388 179372471 -17822961 + (CCCG)n Simple_repeat Simple_repeat 1 82 0 6 1953 238 242 49 16 chr1 179372567 179372672 -17822760 + G-rich Low_complexity Low_complexity 6 116 0 6 1953 180 0 0 0 chr1 179372672 179372692 -17822740 + (GGA)n Simple_repeat Simple_repeat 2 21 0 6 1953 238 242 49 16 chr1 179372692 179372708 -17822724 + G-rich Low_complexity Low_complexity 117 131 0 6 1953 248 276 17 23 chr1 179372907 179373081 -17822351 + G-rich Low_complexity Low_complexity 2 174 0 6 1953 23 0 0 0 chr1 179374998 179375021 -17820411 + AT_rich Low_complexity Low_complexity 1 23 0 6 1953 183 42 0 0 chr1 179375465 179375489 -17819943 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1953 22 35 0 0 chr1 179376309 179376338 -17819094 + AT_rich Low_complexity Low_complexity 1 29 0 6 1953 389 90 15 0 chr1 179378805 179378872 -17816560 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1953 189 0 0 0 chr1 179379153 179379174 -17816258 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1953 180 0 0 0 chr1 179379740 179379760 -17815672 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 6 1953 209 333 0 29 chr1 179380030 179380098 -17815334 + polypyrimidine Low_complexity Low_complexity 1 66 0 6 1953 222 37 0 0 chr1 179380503 179380530 -17814902 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1953 25 0 0 0 chr1 179382967 179382992 -17812440 + AT_rich Low_complexity Low_complexity 1 25 0 6 1953 891 161 0 0 chr1 179386104 179386265 -17809167 + GA-rich Low_complexity Low_complexity 4 164 0 6 1953 31 26 0 0 chr1 179387572 179387610 -17807822 + AT_rich Low_complexity Low_complexity 1 38 0 6 1953 24 0 0 0 chr1 179387975 179387999 -17807433 + AT_rich Low_complexity Low_complexity 1 24 0 6 1953 378 0 0 0 chr1 179388333 179388375 -17807057 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1953 223 96 0 37 chr1 179388631 179388685 -17806747 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1953 451 68 54 0 chr1 179389669 179389743 -17805689 + (TTTTC)n Simple_repeat Simple_repeat 2 79 0 6 1953 239 273 18 0 chr1 179391307 179391362 -17804070 + MIR3 SINE MIR 130 185 -23 6 1953 653 66 11 0 chr1 179392110 179392201 -17803231 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1953 435 38 0 0 chr1 179392201 179392254 -17803178 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1953 283 254 16 16 chr1 179392254 179392318 -17803114 - B4 SINE B4 -22 270 207 6 1953 400 229 64 45 chr1 179392300 179392410 -17803022 - PB1D7 SINE Alu -2 118 7 6 1953 698 312 63 66 chr1 179392869 179393263 -17802169 - MLT1K LTR MaLR -10 585 193 6 1953 2289 133 11 19 chr1 179394149 179394510 -17800922 - ORR1B2 LTR MaLR -8 359 2 6 1953 405 323 61 61 chr1 179394681 179394895 -17800537 - MLT1K LTR MaLR 0 595 382 6 1953 944 254 4 35 chr1 179395256 179395412 -17800020 - ID_B1 SINE B4 -3 221 69 6 1953 2334 149 27 15 chr1 179395412 179395814 -17799618 + MTB_Mm LTR MaLR 1 407 0 6 1953 944 254 4 35 chr1 179395814 179395885 -17799547 - ID SINE ID -156 68 1 6 1953 459 0 0 0 chr1 179396176 179396227 -17799205 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1953 279 231 50 36 chr1 179396323 179396470 -17798962 - RMER17D LTR ERVK -267 542 385 6 1953 248 358 116 12 chr1 179396601 179396765 -17798667 - MLT1K LTR MaLR -286 181 1 6 1953 281 370 94 41 chr1 179397111 179397356 -17798076 + MIRb SINE MIR 5 262 -6 6 1953 215 294 14 14 chr1 179399503 179399572 -17795860 + CT-rich Low_complexity Low_complexity 1 69 0 6 1953 432 55 0 0 chr1 179399583 179399638 -17795794 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 6 1953 280 200 0 58 chr1 179399638 179399698 -17795734 - PB1D10 SINE Alu -12 105 48 6 1953 551 294 115 11 chr1 179399699 179399881 -17795551 + ORR1E LTR MaLR 148 348 -11 6 1953 332 246 73 73 chr1 179400825 179400948 -17794484 + MIRc SINE MIR 146 268 0 6 1953 503 124 35 0 chr1 179402110 179402223 -17793209 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 6 1953 852 288 153 30 chr1 179402408 179402813 -17792619 + MLT1C LTR MaLR 1 455 -12 6 1953 448 330 94 40 chr1 179402873 179403148 -17792284 - ORR1E LTR MaLR -59 300 11 6 1953 634 229 35 14 chr1 179403696 179403838 -17791594 + MER58B DNA MER1_type 195 339 -2 6 1953 298 352 43 12 chr1 179403855 179404016 -17791416 - MLT1H LTR MaLR 0 549 384 6 1953 186 208 0 0 chr1 179404025 179404073 -17791359 + T-rich Low_complexity Low_complexity 1 48 0 6 1953 872 182 0 0 chr1 179404073 179404221 -17791211 - B1_Mur2 SINE Alu 0 149 2 6 1953 569 272 40 8 chr1 179404554 179404680 -17790752 - B3A SINE B2 -68 130 1 6 1953 371 224 169 93 chr1 179404684 179404716 -17790716 - B2_Mm2 SINE B2 -10 185 154 6 1953 393 22 0 0 chr1 179404716 179404762 -17790670 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1953 535 224 169 93 chr1 179404762 179404901 -17790531 - B3A SINE B2 -41 157 1 6 1953 356 389 67 35 chr1 179405039 179405380 -17790052 + ORR1E LTR MaLR 2 353 -6 6 1953 347 283 89 20 chr1 179405971 179406072 -17789360 - MIRm SINE MIR -6 270 163 6 1953 696 226 0 50 chr1 179406154 179406294 -17789138 + ID_B1 SINE B4 81 213 -11 6 1953 190 393 14 69 chr1 179406526 179406671 -17788761 + MIRb SINE MIR 113 249 -19 6 1953 240 329 38 12 chr1 179406745 179406825 -17788607 - L2b LINE L2 -1 3374 3293 6 1953 498 286 71 0 chr1 179406963 179407117 -17788315 - B4A SINE B4 -41 251 87 6 1953 819 198 154 5 chr1 179407189 179407377 -17788055 + B3 SINE B2 1 216 0 6 1953 273 314 26 128 chr1 179407380 179407497 -17787935 + MT2B LTR ERVL 133 237 -364 6 1953 324 291 0 65 chr1 179407407 179407499 -17787933 + B4A SINE B4 84 169 -123 6 1953 548 160 35 78 chr1 179407419 179407534 -17787898 + PB1D9 SINE Alu 11 120 0 6 1953 272 137 0 19 chr1 179407534 179407586 -17787846 + GA-rich Low_complexity Low_complexity 3 53 0 6 1953 439 307 47 0 chr1 179407850 179408000 -17787432 + ALINE LINE RTE 189 345 -272 6 1953 192 383 37 18 chr1 179408111 179408220 -17787212 + MIR SINE MIR 79 189 -73 6 1953 695 146 62 103 chr1 179408264 179408409 -17787023 + B1_Mus1 SINE Alu 3 141 -7 6 1953 873 169 0 0 chr1 179408410 179408570 -17786862 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 6 1953 241 327 66 66 chr1 179408582 179408808 -17786624 - MIR SINE MIR 0 262 37 6 1953 463 305 75 71 chr1 179408817 179409099 -17786333 + ORR1E LTR MaLR 67 349 -10 7 1953 402 21 0 0 chr1 179409313 179409360 -17786072 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1953 252 0 0 0 chr1 179410579 179410607 -17784825 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1953 302 335 50 89 chr1 179410762 179411044 -17784388 - B4 SINE B4 -18 274 4 7 1953 711 289 38 38 chr1 179411909 179412054 -17783378 + MER82 DNA MER2_type 7 152 -501 7 1953 1226 245 9 136 chr1 179412054 179412488 -17782944 + MTE2a LTR MaLR 1 379 0 7 1953 711 289 38 38 chr1 179412488 179412608 -17782824 + MER82 DNA MER2_type 153 272 -381 7 1953 213 297 31 0 chr1 179412745 179412809 -17782623 - MIRb SINE MIR -15 253 188 7 1953 1819 202 37 57 chr1 179412854 179413258 -17782174 + MTD LTR MaLR 10 405 -14 7 1953 22 35 0 0 chr1 179413363 179413392 -17782040 + AT_rich Low_complexity Low_complexity 1 29 0 7 1953 929 280 101 74 chr1 179413793 179414090 -17781342 + Tigger7 DNA MER2_type 1 305 -2186 7 1953 489 308 134 34 chr1 179414090 179414382 -17781050 + Tigger7 DNA MER2_type 2128 2448 -43 7 1953 411 303 150 12 chr1 179414410 179414664 -17780768 - B4A SINE B4 0 292 4 7 1953 577 273 13 20 chr1 179416253 179416406 -17779026 + RSINE1 SINE B4 2 153 -12 7 1953 336 102 0 0 chr1 179416699 179416748 -17778684 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 7 1953 480 303 90 21 chr1 179416748 179416893 -17778539 - RSINE1 SINE B4 -5 160 6 7 1953 335 307 22 59 chr1 179417080 179417215 -17778217 + MIR SINE MIR 129 258 -4 7 1953 205 27 53 26 chr1 179417779 179417817 -17777615 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1953 282 247 47 94 chr1 179419122 179419207 -17776225 - AluG_3 SINE Alu -91 220 148 7 1953 250 283 8 124 chr1 179419197 179419318 -17776114 + Tigger7 DNA MER2_type 292 398 -2093 7 1953 654 49 0 0 chr1 179419321 179419403 -17776029 + (TC)n Simple_repeat Simple_repeat 1 82 0 7 1953 27 29 0 0 chr1 179419677 179419711 -17775721 + AT_rich Low_complexity Low_complexity 1 34 0 7 1953 486 0 0 0 chr1 179419714 179419768 -17775664 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1953 534 242 9 27 chr1 179420410 179420539 -17774893 + PB1 SINE Alu 3 127 0 7 1953 21 0 0 0 chr1 179420842 179420863 -17774569 + AT_rich Low_complexity Low_complexity 1 21 0 7 1953 525 322 112 32 chr1 179421027 179421277 -17774155 + MamSINE1 SINE tRNA 2 271 -19 7 1953 233 188 15 15 chr1 179421323 179421388 -17774044 + T-rich Low_complexity Low_complexity 4 68 0 7 1953 393 86 0 0 chr1 179422806 179422864 -17772568 + (TATG)n Simple_repeat Simple_repeat 1 58 0 7 1953 236 314 98 16 chr1 179422865 179422988 -17772444 + L2a LINE L2 3289 3421 -5 7 1953 412 230 30 108 chr1 179423022 179423188 -17772244 - RMER17B LTR ERVK -495 463 311 7 1953 21 36 0 0 chr1 179424034 179424062 -17771370 + AT_rich Low_complexity Low_complexity 1 28 0 7 1953 273 98 0 0 chr1 179426121 179426162 -17769270 + (TAA)n Simple_repeat Simple_repeat 1 41 0 7 1953 291 315 53 38 chr1 179426989 179427003 -17768429 + B4 SINE B4 68 198 -91 7 1953 452 287 17 0 chr1 179427003 179427118 -17768314 + PB1 SINE Alu 2 118 -9 7 1953 396 0 0 0 chr1 179427459 179427503 -17767929 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1953 204 270 43 33 chr1 179427975 179428074 -17767358 + MIRc SINE MIR 63 159 -49 7 1953 186 43 0 0 chr1 179428440 179428463 -17766969 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1953 1313 255 7 3 chr1 179428501 179428788 -17766644 - B4A SINE B4 -4 288 1 7 1953 390 279 36 0 chr1 179429930 179430033 -17765399 - PB1D10 SINE Alu -2 115 9 7 1953 223 173 18 88 chr1 179430249 179430306 -17765126 - RSINE1 SINE B4 -110 55 3 7 1953 1035 149 193 0 chr1 179430885 179431066 -17764366 + B3 SINE B2 1 216 0 7 1953 25 31 0 0 chr1 179431066 179431098 -17764334 + AT_rich Low_complexity Low_complexity 1 32 0 7 1953 293 306 0 0 chr1 179431209 179431273 -17764159 + ID4 SINE ID 10 73 -10 7 1953 287 49 24 0 chr1 179431273 179431314 -17764118 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 7 1953 293 324 0 650 chr1 179431314 179431334 -17764098 + ID4 SINE ID 74 93 -59 7 1953 317 173 79 13 chr1 179432771 179432847 -17762585 + Lx8 LINE L1 7388 7468 -5 7 1953 21 36 0 0 chr1 179432896 179432924 -17762508 + AT_rich Low_complexity Low_complexity 1 28 0 7 1953 4086 135 180 12 chr1 179433367 179434139 -17761293 + RMER19B LTR ERVK 1 902 0 7 1953 247 379 0 11 chr1 179434562 179434650 -17760782 - L2b LINE L2 -2 3373 3287 7 1953 450 0 0 0 chr1 179434831 179434881 -17760551 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1953 32 0 0 0 chr1 179435002 179435034 -17760398 + AT_rich Low_complexity Low_complexity 1 32 0 7 1953 449 272 163 72 chr1 179435128 179435522 -17759910 + MLT1D LTR MaLR 5 390 0 7 1953 750 218 36 36 chr1 179436025 179436220 -17759212 - B3A SINE B2 -2 196 2 7 1953 268 250 21 106 chr1 179436485 179436526 -17758906 - MTEb LTR MaLR 0 379 344 7 1953 215 61 0 29 chr1 179436526 179436560 -17758872 + (CAA)n Simple_repeat Simple_repeat 3 35 0 7 1953 268 256 23 104 chr1 179436560 179436623 -17758809 - MTEb LTR MaLR -36 343 282 7 1953 225 328 55 97 chr1 179436712 179436857 -17758575 - MTEb LTR MaLR -168 191 53 7 1953 234 239 97 14 chr1 179436825 179436897 -17758535 - MER76 LTR ERVL -211 480 403 7 1954 480 282 13 13 chr1 179438063 179438221 -17757211 + MER96B DNA hAT 56 213 -204 7 1954 217 277 16 0 chr1 179438423 179438527 -17756905 + B1F SINE Alu 5 140 -9 7 1954 317 293 150 0 chr1 179438605 179438738 -17756694 - HAL1-3A_ME LINE L1 -729 2129 1977 7 1954 638 217 9 18 chr1 179438743 179438888 -17756544 - B1F SINE Alu -3 146 3 7 1954 267 233 17 104 chr1 179438785 179438900 -17756532 - MT2B2 LTR ERVL -326 258 154 7 1954 423 333 92 33 chr1 179440290 179440442 -17754990 + B4 SINE B4 132 292 0 7 1954 432 0 0 0 chr1 179440463 179440511 -17754921 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1954 861 284 47 20 chr1 179440964 179441219 -17754213 - B4 SINE B4 -26 266 5 7 1954 409 202 71 0 chr1 179442266 179442350 -17753082 + MTD LTR MaLR 1 90 -329 7 1954 1312 223 127 6 chr1 179442351 179442689 -17752743 + MTD LTR MaLR 41 419 0 7 1954 700 280 51 15 chr1 179443529 179443725 -17751707 + B4 SINE B4 23 225 -67 7 1954 277 145 0 31 chr1 179443816 179443880 -17751552 + GA-rich Low_complexity Low_complexity 1 62 0 7 1954 255 311 9 45 chr1 179444084 179444195 -17751237 + CT-rich Low_complexity Low_complexity 4 110 0 7 1954 542 266 8 0 chr1 179444705 179444829 -17750603 - ID_B1 SINE B4 -16 208 84 7 1954 580 184 22 0 chr1 179445213 179445349 -17750083 + CT-rich Low_complexity Low_complexity 2 140 0 7 1954 348 0 20 0 chr1 179445353 179445402 -17750030 - B1_Mus2 SINE Alu 0 147 98 7 1954 193 297 122 0 chr1 179446010 179446084 -17749348 - MIR SINE MIR -22 240 158 7 1954 506 250 8 8 chr1 179446091 179446212 -17749220 + RSINE1 SINE B4 4 124 -41 7 1954 414 0 0 0 chr1 179446212 179446258 -17749174 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1954 351 0 0 0 chr1 179446258 179446296 -17749136 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1954 1204 54 0 13 chr1 179446344 179446493 -17748939 + B1_Mm SINE Alu 1 147 0 7 1954 377 253 0 0 chr1 179446783 179446862 -17748570 + ID4_ SINE ID 1 79 -4 7 1954 277 267 0 13 chr1 179449955 179450031 -17745401 + ID2 SINE ID 3 77 -6 7 1954 209 211 0 17 chr1 179450048 179450106 -17745326 + GA-rich Low_complexity Low_complexity 3 59 0 7 1954 671 282 115 33 chr1 179450860 179451252 -17744180 + MLT1D LTR MaLR 74 497 -8 7 1954 1161 131 97 5 chr1 179451829 179452036 -17743396 + URR1A DNA MER1_type 1 226 0 7 1954 602 298 35 0 chr1 179452516 179452713 -17742719 + B4 SINE B4 7 210 -82 7 1954 723 279 135 34 chr1 179452713 179453010 -17742422 + ORR1E LTR MaLR 1 327 -32 7 1954 357 213 73 9 chr1 179452999 179453108 -17742324 + ORR1E-int LTR MaLR 6 121 -1459 7 1954 1244 224 152 14 chr1 179453106 179453468 -17741964 + MTD LTR MaLR 8 419 0 7 1954 736 262 0 42 chr1 179453492 179453659 -17741773 + RSINE1 SINE B4 4 163 -2 7 1954 266 292 0 14 chr1 179454243 179454316 -17741116 + MTEb LTR MaLR 287 358 -21 7 1954 1380 232 11 0 chr1 179454469 179454754 -17740678 - B4 SINE B4 -4 288 1 7 1954 1407 339 118 31 chr1 179454761 179455656 -17739776 - Charlie24 DNA MER1_type -1055 1395 423 7 1954 232 294 12 12 chr1 179455813 179455899 -17739533 - Charlie24 DNA MER1_type -2216 234 149 7 1954 504 256 67 101 chr1 179456028 179456206 -17739226 - B4A SINE B4 -120 172 1 7 1954 319 293 0 108 chr1 179457098 179457274 -17738158 + B4A SINE B4 5 161 -131 7 1954 279 0 0 0 chr1 179457290 179457321 -17738111 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1954 180 0 0 0 chr1 179457470 179457490 -17737942 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1954 275 185 74 0 chr1 179457490 179457544 -17737888 - B1F SINE Alu -13 136 79 7 1954 216 302 0 0 chr1 179459254 179459317 -17736115 - L2b LINE L2 0 3375 3313 7 1954 263 309 52 0 chr1 179459485 179459582 -17735850 - MTEb LTR MaLR 0 379 278 7 1954 266 290 0 0 chr1 179460056 179460125 -17735307 - L2a LINE L2 0 3426 3358 7 1954 309 68 0 0 chr1 179460724 179460768 -17734664 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1954 850 295 46 18 chr1 179462277 179462557 -17732875 + B4A SINE B4 3 290 -2 7 1954 354 91 0 0 chr1 179462630 179462685 -17732747 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1954 342 247 0 0 chr1 179463302 179463395 -17732037 + GA-rich Low_complexity Low_complexity 2 94 0 7 1954 1979 217 10 7 chr1 179463488 179463897 -17731535 + MTD LTR MaLR 10 419 0 7 1954 287 298 19 9 chr1 179464727 179464832 -17730600 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 7 1954 239 157 20 0 chr1 179466165 179466216 -17729216 + CT-rich Low_complexity Low_complexity 2 53 0 7 1954 338 303 29 29 chr1 179466990 179467126 -17728306 + MLT1G3 LTR MaLR 174 309 -286 8 1954 638 337 77 18 chr1 179467203 179467627 -17727805 - MER74A LTR ERVL -93 529 83 8 1954 459 0 0 0 chr1 179468007 179468058 -17727374 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1954 414 0 0 0 chr1 179468675 179468721 -17726711 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1954 1165 250 73 16 chr1 179468753 179469066 -17726366 - ORR1E LTR MaLR 0 359 29 8 1954 1210 243 93 21 chr1 179469225 179469612 -17725820 - MTD LTR MaLR 0 419 5 8 1954 1879 206 53 24 chr1 179470162 179470580 -17724852 + Lx6 LINE L1 6294 6723 -737 8 1954 3109 174 190 74 chr1 179470571 179471418 -17724014 + Lx7 LINE L1 6752 7696 0 8 1954 1964 182 58 0 chr1 179472612 179472992 -17722440 + MTD LTR MaLR 18 419 0 8 1954 255 324 99 26 chr1 179473124 179473276 -17722156 + RSINE1 SINE B4 3 165 0 8 1954 284 270 33 11 chr1 179473358 179473448 -17721984 + MIR SINE MIR 79 170 -92 8 1954 249 111 0 0 chr1 179473462 179473498 -17721934 + U6 snRNA snRNA 2 37 -70 8 1954 214 271 0 0 chr1 179473513 179473561 -17721871 + MIR SINE MIR 191 238 -24 8 1954 294 250 148 62 chr1 179473615 179473743 -17721689 + B4 SINE B4 4 142 -150 8 1954 444 37 0 0 chr1 179473806 179473860 -17721572 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1954 562 230 35 0 chr1 179474822 179474935 -17720497 - PB1D10 SINE Alu 0 117 1 8 1954 294 95 0 0 chr1 179476608 179476650 -17718782 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 8 1954 238 279 18 15 chr1 179477230 179477323 -17718109 - MIRc SINE MIR -88 174 81 8 1954 325 188 12 12 chr1 179477323 179477404 -17718028 + (TA)n Simple_repeat Simple_repeat 2 82 0 8 1954 2398 164 29 22 chr1 179477420 179477837 -17717595 + MTC LTR MaLR 2 421 0 8 1954 912 173 11 6 chr1 179477837 179478017 -17717415 + MTC-int LTR MaLR 3 183 -1075 8 1954 301 226 0 0 chr1 179478017 179478070 -17717362 - RMER1C Other Other -586 756 704 8 1954 2012 193 92 20 chr1 179478071 179478225 -17717207 + RMER1C Other Other 843 1002 -340 8 1954 423 0 0 0 chr1 179478225 179478272 -17717160 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1954 2012 193 92 20 chr1 179478272 179478576 -17716856 + RMER1C Other Other 1003 1333 -9 8 1954 5821 137 33 25 chr1 179478585 179479685 -17715747 + MTC-int LTR MaLR 151 1258 0 8 1954 1890 176 30 6 chr1 179479685 179480051 -17715381 + MTC LTR MaLR 1 375 -46 8 1954 576 0 0 0 chr1 179480067 179480131 -17715301 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1954 868 169 14 0 chr1 179480244 179480392 -17715040 + B1_Mur4 SINE Alu 1 150 0 8 1954 181 392 103 8 chr1 179480438 179480564 -17714868 - L2b LINE L2 -1 3374 3237 8 1954 407 153 41 0 chr1 179481547 179481645 -17713787 + (TA)n Simple_repeat Simple_repeat 1 102 0 8 1954 366 331 107 7 chr1 179481662 179481811 -17713621 - RSINE1 SINE B4 0 165 2 8 1954 837 186 193 22 chr1 179481901 179482082 -17713350 + B3 SINE B2 2 213 -3 8 1954 456 347 28 0 chr1 179482370 179482514 -17712918 - RSINE1 SINE B4 -15 150 3 8 1954 7377 124 11 9 chr1 179482602 179483973 -17711459 - Lx LINE L1 -6 6648 5275 8 1954 469 313 42 38 chr1 179484498 179484734 -17710698 + Lx9 LINE L1 7280 7516 -128 8 1954 357 109 0 0 chr1 179484735 179484790 -17710642 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1954 674 129 17 0 chr1 179484960 179485076 -17710356 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 8 1954 514 300 144 0 chr1 179486322 179486502 -17708930 + B4A SINE B4 2 207 -85 8 1954 476 72 14 0 chr1 179486503 179486572 -17708860 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 1954 830 157 168 0 chr1 179486623 179486808 -17708624 + URR1B DNA MER1_type 6 221 -4 8 1954 270 0 0 0 chr1 179487331 179487361 -17708071 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1954 464 248 8 25 chr1 179488300 179488420 -17707012 - MTEa LTR MaLR -1 378 261 8 1954 373 293 8 49 chr1 179488476 179488598 -17706834 - MTEa LTR MaLR -236 123 7 8 1954 218 275 154 35 chr1 179489789 179489932 -17705500 - MIRb SINE MIR -70 198 39 8 1954 186 43 0 0 chr1 179489950 179489973 -17705459 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1954 284 173 0 0 chr1 179489982 179490034 -17705398 - RLTR15 LTR ERVK -56 303 252 8 1954 563 91 8 60 chr1 179490038 179490155 -17705277 - L1Md_F2 LINE L1 0 6582 6472 8 1954 21 36 0 0 chr1 179490576 179490604 -17704828 + AT_rich Low_complexity Low_complexity 1 28 0 8 1954 181 140 23 23 chr1 179490697 179490741 -17704691 + T-rich Low_complexity Low_complexity 2 45 0 8 1954 522 0 0 0 chr1 179490741 179490799 -17704633 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 8 1954 384 22 0 0 chr1 179490799 179490843 -17704589 + (TTG)n Simple_repeat Simple_repeat 1 45 0 8 1954 317 285 97 49 chr1 179491123 179491267 -17704165 + HAL1-3A_ME LINE L1 1975 2125 -733 8 1954 305 300 107 36 chr1 179491543 179491768 -17703664 - L1MA6 LINE L1 -43 6257 6017 8 1954 306 0 0 0 chr1 179492045 179492079 -17703353 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1954 404 147 53 13 chr1 179493031 179493183 -17702249 + (TA)n Simple_repeat Simple_repeat 2 159 0 8 1954 399 235 0 0 chr1 179495563 179495661 -17699771 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 1954 203 369 101 0 chr1 179495948 179496127 -17699305 - L2a LINE L2 -282 3144 2948 8 1954 256 368 27 70 chr1 179496325 179496626 -17698806 - L2a LINE L2 -744 2675 2388 8 1954 472 140 21 0 chr1 179497274 179497367 -17698065 + GA-rich Low_complexity Low_complexity 2 96 0 8 1954 307 262 12 12 chr1 179497840 179497921 -17697511 - ID4 SINE ID 0 83 3 8 1954 25 31 0 0 chr1 179497923 179497955 -17697477 + AT_rich Low_complexity Low_complexity 1 32 0 8 1954 681 240 91 77 chr1 179497955 179498078 -17697354 - B4A SINE B4 -68 224 88 8 1954 222 37 0 0 chr1 179498078 179498105 -17697327 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1954 681 240 91 77 chr1 179498105 179498202 -17697230 - B4A SINE B4 -205 87 1 8 1954 1370 73 11 0 chr1 179498876 179499053 -17696379 + B2_Mm1t SINE B2 1 179 -14 8 1954 298 164 0 18 chr1 179499108 179499164 -17696268 + B2_Mm2 SINE B2 47 101 -94 8 1954 291 54 0 0 chr1 179499188 179499225 -17696207 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 8 1954 599 207 7 0 chr1 179499311 179499456 -17695976 + (TA)n Simple_repeat Simple_repeat 2 147 0 8 1954 189 0 0 0 chr1 179500393 179500414 -17695018 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1954 1002 118 0 0 chr1 179500415 179500551 -17694881 - B1_Mus1 SINE Alu -12 136 1 2 1954 543 164 139 0 chr1 179500571 179500693 -17694739 - B1F2 SINE Alu -10 139 1 3 1954 243 283 31 286 chr1 179500712 179500728 -17694704 - B4A SINE B4 -71 153 134 4 1954 366 23 0 0 chr1 179500728 179500771 -17694661 + (TCC)n Simple_repeat Simple_repeat 3 45 0 5 1954 243 267 1 47 chr1 179500771 179500827 -17694605 - B4A SINE B4 -155 137 79 4 1954 687 147 0 0 chr1 179500972 179501088 -17694344 + (TG)n Simple_repeat Simple_repeat 2 117 0 6 1954 252 322 148 19 chr1 179501119 179501274 -17694158 + L2a LINE L2 2702 2876 -543 7 1954 810 297 77 32 chr1 179501498 179501745 -17693687 + B4A SINE B4 35 292 0 8 1954 240 295 83 10 chr1 179501691 179501787 -17693645 + B3 SINE B2 113 215 -1 9 1954 336 26 0 0 chr1 179501880 179501919 -17693513 - HAL1-3A_ME LINE L1 -843 2015 1977 1 1954 645 256 85 0 chr1 179501924 179502088 -17693344 - B3A SINE B2 -17 181 4 1 1954 332 141 4 0 chr1 179502091 179502148 -17693284 - L1M2 LINE L1 -467 5689 5631 1 1954 182 255 21 21 chr1 179502267 179502315 -17693117 + L2a LINE L2 3294 3341 -85 7 1954 996 184 69 0 chr1 179502484 179502658 -17692774 - B3 SINE B2 -6 210 25 1 1954 386 245 27 36 chr1 179502830 179502940 -17692492 - PB1D10 SINE Alu -2 115 7 1 1954 390 57 0 0 chr1 179503282 179503335 -17692097 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1 1954 26 0 0 0 chr1 179504884 179504910 -17690522 + AT_rich Low_complexity Low_complexity 1 26 0 1 1954 515 262 43 0 chr1 179504992 179505133 -17690299 + B1F1 SINE Alu 3 149 0 1 1954 21 36 0 0 chr1 179505250 179505278 -17690154 + AT_rich Low_complexity Low_complexity 1 28 0 1 1954 322 286 24 0 chr1 179505721 179505805 -17689627 + B3A SINE B2 97 182 -16 1 1954 660 243 22 0 chr1 179505845 179505981 -17689451 - B3A SINE B2 -59 139 1 2 1954 29 28 0 0 chr1 179505981 179506017 -17689415 + AT_rich Low_complexity Low_complexity 1 36 0 2 1954 717 258 96 87 chr1 179506827 179507054 -17688378 - ORSL-2b DNA Tip100 -88 420 210 2 1954 644 270 116 67 chr1 179507054 179507383 -17688049 + MER2 DNA MER2_type 1 345 0 2 1954 717 258 96 87 chr1 179507383 179507521 -17687911 - ORSL-2b DNA Tip100 -299 209 52 2 1954 660 298 94 41 chr1 179507933 179508272 -17687160 - ORR1E LTR MaLR -2 357 1 2 1954 222 260 0 0 chr1 179508689 179508739 -17686693 + CT-rich Low_complexity Low_complexity 2 51 0 2 1954 285 29 0 0 chr1 179508904 179508938 -17686494 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1954 479 245 80 0 chr1 179508962 179509081 -17686351 + B1F SINE Alu 2 126 -23 2 1954 612 285 81 27 chr1 179509524 179509784 -17685648 + B4A SINE B4 1 274 -18 2 1954 666 160 18 0 chr1 179509807 179509976 -17685456 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1954 543 210 274 0 chr1 179510034 179510158 -17685274 - MTC LTR MaLR -68 353 196 3 1954 1655 226 35 8 chr1 179510176 179510547 -17684885 - Lx6 LINE L1 -27 7433 7053 3 1954 333 203 24 48 chr1 179510554 179510637 -17684795 - ID4 SINE ID 0 83 3 3 1954 1269 85 0 0 chr1 179510750 179510926 -17684506 + (TTTCC)n Simple_repeat Simple_repeat 5 180 0 3 1954 321 89 0 0 chr1 179510926 179510971 -17684461 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 3 1954 269 337 0 21 chr1 179510971 179511068 -17684364 + L2a LINE L2 3332 3426 0 3 1954 329 277 48 19 chr1 179512127 179512230 -17683202 + MTEa LTR MaLR 272 377 -2 3 1954 401 291 146 0 chr1 179513217 179513375 -17682057 + B3A SINE B2 4 184 -14 3 1954 204 40 0 0 chr1 179513511 179513536 -17681896 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1954 498 206 88 0 chr1 179513539 179513641 -17681791 - PB1D10 SINE Alu -6 111 1 3 1954 201 121 0 0 chr1 179513998 179514031 -17681401 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 4 1954 209 176 0 0 chr1 179514037 179514071 -17681361 + GA-rich Low_complexity Low_complexity 3 36 0 4 1954 597 197 62 23 chr1 179514072 179514202 -17681230 - RSINE1 SINE B4 -18 147 13 4 1954 568 287 210 0 chr1 179514465 179514646 -17680786 + MER58A DNA MER1_type 6 224 0 4 1954 468 210 0 0 chr1 179514834 179514991 -17680441 + CT-rich Low_complexity Low_complexity 1 157 0 4 1954 249 247 0 0 chr1 179515011 179515092 -17680340 + CT-rich Low_complexity Low_complexity 2 82 0 4 1954 197 326 14 14 chr1 179515092 179515165 -17680267 + MIRm SINE MIR 109 181 -27 4 1954 262 357 27 54 chr1 179515649 179515797 -17679635 + MIRb SINE MIR 78 221 -47 4 1954 2235 152 11 8 chr1 179516106 179516464 -17678968 + ORR1B2 LTR MaLR 1 359 -8 4 1954 4386 20 8 0 chr1 179516564 179517053 -17678379 + MT2_Mm LTR ERVL 1 493 0 4 1954 9281 36 3 1 chr1 179517055 179518151 -17677281 + MTA_Mm-int LTR MaLR 1 1098 0 4 1954 3655 13 0 0 chr1 179518151 179518547 -17676885 + MTA_Mm LTR MaLR 1 396 0 4 1954 229 340 55 49 chr1 179518559 179518723 -17676709 - ORR1D1 LTR MaLR -193 181 17 5 1954 394 255 19 67 chr1 179518736 179518841 -17676591 + RMER30 DNA MER1_type 10 109 -93 5 1954 324 220 84 42 chr1 179518875 179518970 -17676462 - Charlie12 DNA MER1_type -2756 117 19 5 1954 346 250 0 0 chr1 179519854 179519930 -17675502 - ID4 SINE ID -5 78 3 5 1954 485 174 75 215 chr1 179520472 179520779 -17674653 - Lx9 LINE L1 -3 7641 7378 5 1954 1269 220 87 128 chr1 179520798 179521235 -17674197 - Lx9 LINE L1 -252 7392 6974 5 1954 245 215 170 70 chr1 179521238 179521338 -17674094 + MLT1A0 LTR MaLR 40 149 -216 5 1954 372 320 99 13 chr1 179522135 179522287 -17673145 + MER21B LTR ERV1 349 513 -350 5 1954 214 292 0 0 chr1 179523412 179523460 -17671972 + B4 SINE B4 24 71 -221 5 1954 261 0 0 0 chr1 179523970 179523999 -17671433 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1954 333 0 0 0 chr1 179524860 179524897 -17670535 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 1954 285 279 0 37 chr1 179525702 179525784 -17669648 - MLT1N2 LTR MaLR -29 533 455 6 1954 513 44 0 0 chr1 179526075 179526143 -17669289 + (TTGG)n Simple_repeat Simple_repeat 4 71 0 6 1954 676 286 26 5 chr1 179526523 179526713 -17668719 - B3A SINE B2 0 198 5 6 1954 377 330 64 59 chr1 179527144 179527347 -17668085 - MER63A DNA AcHobo -2 208 5 6 1954 820 248 171 12 chr1 179527426 179527671 -17667761 + B4A SINE B4 3 286 -6 6 1954 222 150 0 0 chr1 179527705 179527745 -17667687 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1954 588 258 103 0 chr1 179527856 179528050 -17667382 - ID_B1 SINE B4 -9 215 2 6 1954 246 339 0 0 chr1 179528167 179528226 -17667206 + tRNA-Ala-GCY_ tRNA tRNA 9 67 -8 6 1954 228 396 9 36 chr1 179528346 179528456 -17666976 - MER45R DNA Tip100 -1467 114 8 6 1954 230 366 110 62 chr1 179528575 179528802 -17666630 + MLT1F1 LTR MaLR 309 546 -23 6 1954 259 308 118 59 chr1 179528813 179529034 -17666398 + Charlie7 DNA MER1_type 280 513 -2099 7 1954 559 237 165 26 chr1 179529037 179529267 -17666165 - Lx8 LINE L1 -489 6984 6723 7 1954 798 184 59 113 chr1 179529352 179529573 -17665859 - B3 SINE B2 -6 210 2 7 1954 1424 276 65 22 chr1 179529673 179530177 -17665255 + L1MA6 LINE L1 5769 6294 -6 7 1954 396 291 121 117 chr1 179530214 179530727 -17664705 - L1M5 LINE L1 -471 5769 5255 7 1954 36 0 0 0 chr1 179530796 179530832 -17664600 + AT_rich Low_complexity Low_complexity 1 36 0 7 1954 517 266 91 0 chr1 179530844 179530911 -17664521 - RSINE1 SINE B4 -5 160 94 7 1954 726 96 0 0 chr1 179530911 179531015 -17664417 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 7 1954 517 266 91 0 chr1 179531015 179531090 -17664342 - RSINE1 SINE B4 -72 93 6 7 1954 330 306 8 47 chr1 179531368 179531495 -17663937 - L1M5 LINE L1 -1524 4622 4501 7 1954 273 274 0 52 chr1 179531804 179531881 -17663551 + MER21B LTR ERV1 506 578 -285 7 1954 729 271 48 34 chr1 179531974 179532180 -17663252 + MER21B LTR ERV1 594 802 -61 7 1954 46 33 0 0 chr1 179532276 179532336 -17663096 + AT_rich Low_complexity Low_complexity 1 60 0 7 1954 3480 30 2 2 chr1 179532833 179533231 -17662201 + MTB LTR MaLR 3 400 0 8 1954 1155 234 144 38 chr1 179533419 179533739 -17661693 - ORR1D2 LTR MaLR -16 354 1 8 1954 200 359 53 42 chr1 179534117 179534341 -17661091 + L2b LINE L2 2926 3152 -235 8 1954 284 286 91 10 chr1 179534405 179534504 -17660928 + PB1D10 SINE Alu 11 117 0 8 1954 319 248 14 74 chr1 179534521 179534646 -17660786 + ID4 SINE ID 10 128 -24 8 1954 260 293 98 21 chr1 179534651 179534809 -17660623 + L2b LINE L2 3204 3396 -30 8 1954 231 114 0 0 chr1 179535277 179535312 -17660120 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1954 198 0 0 0 chr1 179535386 179535408 -17660024 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1954 23 0 0 0 chr1 179535518 179535541 -17659891 + AT_rich Low_complexity Low_complexity 1 23 0 8 1954 216 0 0 0 chr1 179535977 179536001 -17659431 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1954 1023 241 13 18 chr1 179536217 179536441 -17658991 + ID_B1 SINE B4 2 224 0 8 1954 773 155 39 0 chr1 179536661 179536790 -17658642 + B1_Mus2 SINE Alu 2 135 -12 9 1954 213 94 0 0 chr1 179538419 179538451 -17656981 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 9 1954 240 25 0 24 chr1 179539951 179539992 -17655440 - Lx4A LINE L1 -946 6112 6073 9 1954 1018 136 140 62 chr1 179539975 179540218 -17655214 + Lx4A LINE L1 6795 7056 -2 9 1954 513 115 0 0 chr1 179540264 179540342 -17655090 + (TCTCCC)n Simple_repeat Simple_repeat 6 83 0 9 1954 252 0 0 0 chr1 179540380 179540408 -17655024 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1954 336 238 101 37 chr1 179541476 179541585 -17653847 + ORR1D1 LTR MaLR 257 372 -2 9 1954 475 281 29 22 chr1 179541669 179541807 -17653625 + MIRb SINE MIR 102 240 -28 9 1954 181 299 76 25 chr1 179543810 179543889 -17651543 - L2c LINE L2 -233 3154 3072 9 1954 320 380 124 9 chr1 179543881 179544099 -17651333 + MIRb SINE MIR 23 265 -3 9 1954 223 346 0 0 chr1 179546919 179547000 -17648432 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1954 535 245 50 7 chr1 179547011 179547151 -17648281 - RSINE1 SINE B4 -18 147 2 1 1954 1182 35 14 20 chr1 179547285 179547433 -17647999 + B1_Mus2 SINE Alu 1 147 0 1 1954 7883 212 47 35 chr1 179547882 179549615 -17645817 + Lx6 LINE L1 5690 7443 -17 1 1954 1181 75 0 0 chr1 179549639 179549785 -17645647 + B1_Mus2 SINE Alu 1 146 -1 1 1954 1411 94 16 0 chr1 179549799 179549990 -17645442 - B2_Mm2 SINE B2 0 195 2 1 1954 210 273 0 0 chr1 179550160 179550215 -17645217 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1954 658 258 39 13 chr1 179550230 179550383 -17645049 - RSINE1 SINE B4 -8 157 1 1 1954 215 329 124 42 chr1 179552776 179553017 -17642415 - MIR SINE MIR -3 265 2 1 1954 358 322 58 9 chr1 179554118 179554290 -17641142 + MIRb SINE MIR 14 182 -94 1 1954 806 198 6 0 chr1 179554346 179554523 -17640909 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 1954 218 167 0 0 chr1 179554550 179554586 -17640846 + CT-rich Low_complexity Low_complexity 2 37 0 1 1954 192 200 0 0 chr1 179554650 179554690 -17640742 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1 1954 378 115 0 0 chr1 179554735 179554796 -17640636 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1954 435 19 0 0 chr1 179554796 179554848 -17640584 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1954 400 349 0 34 chr1 179555532 179555707 -17639725 + HAL1-2a_MD LINE L1 2351 2519 -505 1 1954 347 98 16 0 chr1 179555711 179555772 -17639660 + (CCA)n Simple_repeat Simple_repeat 2 63 0 1 1954 266 171 0 0 chr1 179556079 179556120 -17639312 + B1F2 SINE Alu 3 43 -106 1 1954 378 0 0 0 chr1 179556127 179556169 -17639263 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1954 272 270 17 17 chr1 179556606 179556723 -17638709 + CT-rich Low_complexity Low_complexity 1 117 0 1 1954 465 209 0 0 chr1 179556749 179556897 -17638535 + CT-rich Low_complexity Low_complexity 1 148 0 1 1954 201 229 0 0 chr1 179558372 179558420 -17637012 + GA-rich Low_complexity Low_complexity 1 48 0 1 1954 782 166 0 7 chr1 179558933 179559013 -17636419 + polypyrimidine Low_complexity Low_complexity 74 153 0 1 1954 1326 78 0 0 chr1 179559013 179559193 -17636239 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1954 782 166 0 7 chr1 179559193 179559264 -17636168 + polypyrimidine Low_complexity Low_complexity 3 73 0 1 1954 27 62 0 0 chr1 179559291 179559339 -17636093 + AT_rich Low_complexity Low_complexity 1 48 0 1 1954 757 231 7 13 chr1 179559612 179559761 -17635671 + RSINE1 SINE B4 2 149 -16 1 1954 354 23 0 0 chr1 179559765 179559808 -17635624 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1954 927 238 73 9 chr1 179561263 179561496 -17633936 - B4A SINE B4 -2 290 43 1 1954 562 318 103 35 chr1 179561648 179561909 -17633523 + LTR33 LTR ERVL 225 503 -12 1 1954 418 213 185 0 chr1 179561908 179562016 -17633416 - MER103 DNA DNA -5 161 34 1 1954 252 0 0 0 chr1 179563096 179563124 -17632308 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1 1954 256 257 0 119 chr1 179563136 179563220 -17632212 - RSINE1 SINE B4 0 165 92 1 1954 459 125 0 0 chr1 179563354 179563426 -17632006 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1954 297 0 0 0 chr1 179564829 179564862 -17630570 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1954 550 251 170 25 chr1 179564949 179565149 -17630283 - B4 SINE B4 -62 230 2 1 1954 2416 213 160 11 chr1 179565155 179566000 -17629432 + RCHARR1 DNA MER1_type 3 973 -1 1 1954 297 234 78 38 chr1 179566130 179566231 -17629201 - MTEb LTR MaLR -208 171 61 1 1954 246 274 123 0 chr1 179566246 179566319 -17629113 - MTEb LTR MaLR -296 83 2 1 1954 182 245 82 0 chr1 179567612 179567661 -17627771 + L2b LINE L2 3323 3375 0 1 1954 450 278 186 10 chr1 179567750 179567943 -17627489 + MIR SINE MIR 2 228 -34 1 1954 1522 58 5 16 chr1 179568020 179568212 -17627220 + B2_Mm1a SINE B2 1 190 -3 1 1954 1133 283 102 32 chr1 179568448 179568470 -17626962 + MTD LTR MaLR 20 41 -378 1 1954 288 0 0 0 chr1 179568470 179568502 -17626930 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 244 1133 283 102 32 chr1 179568502 179568851 -17626581 + MTD LTR MaLR 42 416 -3 1 1955 180 367 46 36 chr1 179570012 179570207 -17625225 - MIRc SINE MIR -46 222 26 1 1955 568 262 71 0 chr1 179571392 179571518 -17623914 + RSINE1 SINE B4 2 136 -29 1 1955 396 0 0 0 chr1 179571520 179571564 -17623868 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1955 21 57 0 0 chr1 179571569 179571604 -17623828 + AT_rich Low_complexity Low_complexity 1 35 0 1 1955 308 186 185 20 chr1 179571741 179571846 -17623586 - MIRb SINE MIR -45 163 49 1 1955 449 192 201 10 chr1 179572512 179572633 -17622799 + B1F SINE Alu 8 148 -1 1 1955 647 168 23 0 chr1 179572685 179572816 -17622616 + G-rich Low_complexity Low_complexity 3 136 0 1 1955 267 303 22 11 chr1 179573398 179573488 -17621944 + MIR SINE MIR 65 155 -107 1 1955 234 192 96 0 chr1 179573761 179573834 -17621598 - ID4 SINE ID -2 81 2 1 1955 412 255 75 0 chr1 179574969 179575075 -17620357 + PB1D7 SINE Alu 1 114 -6 1 1955 484 303 0 0 chr1 179575304 179575403 -17620029 + PB1 SINE Alu 27 125 -2 1 1955 396 0 0 0 chr1 179575610 179575654 -17619778 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1955 198 282 0 6 chr1 179575711 179575773 -17619659 - MIRb SINE MIR -1 275 210 1 1955 459 368 59 10 chr1 179575862 179576065 -17619367 + B4A SINE B4 3 215 -77 1 1955 603 0 0 0 chr1 179576851 179576918 -17618514 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1955 802 230 31 20 chr1 179577155 179577350 -17618082 + B3A SINE B2 2 198 0 1 1955 339 25 0 0 chr1 179577681 179577721 -17617711 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1955 306 256 39 0 chr1 179578084 179578162 -17617270 + B4A SINE B4 1 81 -211 1 1955 1523 191 129 15 chr1 179578161 179578335 -17617097 - ORR1C2 LTR MaLR -12 372 188 1 1955 342 0 0 0 chr1 179578335 179578373 -17617059 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1955 1523 191 129 15 chr1 179578373 179578532 -17616900 - ORR1C2 LTR MaLR -197 187 3 1 1955 232 207 293 0 chr1 179578548 179578630 -17616802 + PB1D7 SINE Alu 5 110 -10 1 1955 344 256 0 126 chr1 179578615 179578677 -17616755 + B4A SINE B4 203 264 -28 1 1955 234 0 0 0 chr1 179578677 179578703 -17616729 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 1 1955 344 256 0 126 chr1 179578703 179578743 -17616689 + B4A SINE B4 265 292 0 1 1955 732 200 0 0 chr1 179578747 179578927 -17616505 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1955 256 310 20 10 chr1 179578930 179579031 -17616401 + (CATATA)n Simple_repeat Simple_repeat 6 107 0 1 1955 230 300 17 0 chr1 179579118 179579178 -17616254 - ID4 SINE ID -6 77 17 1 1955 361 321 9 0 chr1 179579582 179579688 -17615744 + PB1 SINE Alu 14 120 -7 1 1955 288 226 64 73 chr1 179580419 179580529 -17614903 - MTEb LTR MaLR -11 368 260 1 1955 2340 149 16 0 chr1 179580667 179581037 -17614395 + Lx2A1 LINE L1 6618 6993 -15 1 1955 243 0 0 0 chr1 179581037 179581064 -17614368 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1955 310 216 186 18 chr1 179582542 179582655 -17612777 + HAL1 LINE L1 875 1006 -1501 1 1955 355 312 42 48 chr1 179582668 179582833 -17612599 + ORR1E LTR MaLR 21 184 -175 1 1955 381 162 0 0 chr1 179582849 179582917 -17612515 + CT-rich Low_complexity Low_complexity 6 73 0 1 1955 279 159 167 42 chr1 179583018 179583090 -17612342 + ORR1E LTR MaLR 282 362 -17 1 1955 309 237 58 67 chr1 179583198 179583302 -17612130 - RMER19C LTR ERVK -508 103 1 1 1955 3675 44 5 2 chr1 179583372 179583807 -17611625 - RLTR10C LTR ERVK 0 436 1 1 1955 46270 12 1 1 chr1 179583807 179588906 -17606526 - MMERVK10C-int LTR ERVK 0 7581 1885 1 1955 309 175 0 0 chr1 179588911 179588968 -17606464 - MMERVK10C-int LTR ERVK -4261 1145 1089 1 1955 688 236 154 70 chr1 179588955 179589343 -17606089 - MMERVK10C-int LTR ERVK -4819 2425 2075 1 1955 909 152 4 177 chr1 179589431 179589702 -17605730 - MMERVK10C-int LTR ERVK -6629 952 729 1 1955 2883 47 0 3 chr1 179589700 179590044 -17605388 - MMERVK10C-int LTR ERVK -7238 343 1 1 1955 3675 44 5 2 chr1 179590044 179590479 -17604953 - RLTR10C LTR ERVK 0 436 1 1 1955 998 252 5 9 chr1 179591259 179591471 -17603961 + B3 SINE B2 1 211 -5 1 1955 359 277 93 26 chr1 179591945 179592118 -17603314 - MIRc SINE MIR -40 222 43 1 1955 414 0 0 0 chr1 179592300 179592346 -17603086 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1955 183 129 0 0 chr1 179592592 179592623 -17602809 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1 1955 225 159 48 0 chr1 179592867 179592930 -17602502 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 1955 190 176 96 19 chr1 179594316 179594368 -17601064 - MIRc SINE MIR -150 118 63 1 1955 391 255 123 0 chr1 179594640 179594746 -17600686 + RMER30 DNA MER1_type 5 123 -79 1 1955 1328 24 143 0 chr1 179594756 179594924 -17600508 + B2_Mm1t SINE B2 2 193 0 1 1955 2284 129 0 0 chr1 179594926 179595252 -17600180 + ORR1A3 LTR MaLR 1 326 0 1 1955 297 299 13 0 chr1 179595253 179595330 -17600102 + RMER30 DNA MER1_type 125 202 0 1 1955 382 175 48 48 chr1 179596593 179596677 -17598755 + BC1_Mm scRNA scRNA 2 85 -67 1 1955 754 243 132 6 chr1 179597014 179597196 -17598236 - ID_B1 SINE B4 -12 212 8 1 1955 192 309 62 21 chr1 179597830 179597926 -17597506 + L2 LINE L2 2501 2600 -819 1 1955 873 0 0 0 chr1 179598066 179598163 -17597269 + (CTTTG)n Simple_repeat Simple_repeat 3 99 0 1 1955 180 0 0 0 chr1 179598167 179598187 -17597245 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1955 683 101 18 0 chr1 179598199 179598308 -17597124 + (CCCCCT)n Simple_repeat Simple_repeat 6 116 0 1 1955 743 169 0 0 chr1 179598308 179598432 -17597000 - B1_Mur4 SINE Alu -21 129 6 1 1955 254 281 115 0 chr1 179598470 179598566 -17596866 + MLT1G3 LTR MaLR 8 114 -465 1 1955 369 0 0 0 chr1 179598624 179598665 -17596767 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1955 272 349 217 32 chr1 179598728 179599009 -17596423 + MLT1G3 LTR MaLR 258 590 -5 1 1955 971 231 186 46 chr1 179599425 179599748 -17595684 - ORR1D2 LTR MaLR -2 368 1 1 1955 516 299 27 81 chr1 179599820 179599969 -17595463 + B3A SINE B2 1 141 -57 1 1955 282 56 0 0 chr1 179599969 179600005 -17595427 + (CG)n Simple_repeat Simple_repeat 2 37 0 1 1955 270 0 0 0 chr1 179600005 179600034 -17595398 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1955 508 337 20 20 chr1 179600566 179600769 -17594663 + B4A SINE B4 2 204 -88 1 1955 241 59 0 0 chr1 179600780 179600814 -17594618 + Lx LINE L1 6303 6336 -318 1 1955 2074 111 41 26 chr1 179601107 179601449 -17593983 + Lx LINE L1 6302 6648 -6 2 1955 25 31 0 0 chr1 179601745 179601777 -17593655 + AT_rich Low_complexity Low_complexity 1 32 0 2 1955 646 324 37 96 chr1 179601921 179602297 -17593135 - ORR1E LTR MaLR -5 354 1 2 1955 367 272 12 0 chr1 179602659 179602740 -17592692 + ID4_ SINE ID 2 83 0 2 1955 730 289 121 28 chr1 179603030 179603402 -17592030 + MLT2B2 LTR ERVL 1 399 -15 2 1955 655 261 32 7 chr1 179603913 179604067 -17591365 + RSINE1 SINE B4 3 160 -5 2 1955 31 0 0 0 chr1 179604076 179604107 -17591325 + AT_rich Low_complexity Low_complexity 1 31 0 2 1955 592 202 160 72 chr1 179604264 179604445 -17590987 + B3A SINE B2 1 197 -1 2 1955 1071 238 74 42 chr1 179604513 179604607 -17590825 + Lx7 LINE L1 7030 7122 -574 2 1955 405 0 0 0 chr1 179604607 179604652 -17590780 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1955 1071 238 74 42 chr1 179604652 179604894 -17590538 + Lx7 LINE L1 7123 7377 -319 2 1955 781 197 7 33 chr1 179605278 179605430 -17590002 + B1_Mur3 SINE Alu 2 149 0 2 1955 1231 277 93 53 chr1 179605453 179606021 -17589411 + Lx8 LINE L1 6810 7400 -73 2 1955 219 114 0 0 chr1 179606047 179606082 -17589350 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1955 290 284 59 41 chr1 179606436 179606605 -17588827 + L1M5 LINE L1 4662 4833 -1313 2 1955 372 322 34 34 chr1 179606631 179606863 -17588569 + L1MD LINE L1 5246 5477 -765 2 1955 324 216 235 0 chr1 179607133 179607235 -17588197 + MTE2b LTR MaLR 3 128 -251 2 1955 582 204 137 56 chr1 179607146 179607343 -17588089 + MT2A LTR ERVL 20 232 -301 2 1955 298 255 142 0 chr1 179607362 179607468 -17587964 + MT2A LTR ERVL 411 531 -2 2 1955 637 221 46 0 chr1 179607619 179607750 -17587682 + ORR1E LTR MaLR 1 137 -222 2 1955 315 243 43 0 chr1 179607752 179607822 -17587610 + ORR1E LTR MaLR 293 365 -14 2 1955 1518 62 5 5 chr1 179607950 179608143 -17587289 + B2_Mm1a SINE B2 1 193 0 2 1955 421 284 138 30 chr1 179608500 179608667 -17586765 + MLT1F2 LTR MaLR 124 308 -252 2 1955 314 228 73 42 chr1 179608893 179608989 -17586443 + L1M4c LINE L1 651 749 -5635 2 1955 207 299 132 49 chr1 179609036 179609180 -17586252 + MIRm SINE MIR 118 273 -3 2 1955 223 311 51 36 chr1 179609267 179609404 -17586028 + MIR SINE MIR 74 212 -50 2 1955 339 336 96 27 chr1 179609625 179609845 -17585587 + Tigger5 DNA MER2_type 1 235 -2171 2 1955 456 19 0 0 chr1 179610247 179610300 -17585132 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1955 375 331 32 16 chr1 179610407 179610533 -17584899 + RSINE1 SINE B4 3 130 -35 2 1955 198 0 0 0 chr1 179610539 179610561 -17584871 + (CATA)n Simple_repeat Simple_repeat 2 23 0 2 1955 1074 84 127 0 chr1 179610657 179610823 -17584609 - B2_Mm2 SINE B2 -8 187 1 2 1955 360 0 0 0 chr1 179612247 179612287 -17583145 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1955 339 323 23 23 chr1 179612357 179612487 -17582945 + MLT1A0 LTR MaLR 34 163 -211 2 1955 487 282 25 33 chr1 179612501 179612622 -17582810 + B1F SINE Alu 8 127 -22 2 1955 532 261 103 25 chr1 179612712 179612913 -17582519 + MLT1A0 LTR MaLR 177 379 -11 2 1955 521 250 46 15 chr1 179613107 179613237 -17582195 - B1F SINE Alu -2 147 14 2 1955 339 243 0 207 chr1 179613237 179613372 -17582060 + MER58B DNA MER1_type 219 325 -16 2 1955 442 313 30 53 chr1 179613237 179613276 -17582156 - ID_B1 SINE B4 -2 222 58 2 1955 224 204 241 0 chr1 179613613 179613667 -17581765 + ID4 SINE ID 5 71 -12 2 1955 334 294 62 16 chr1 179613743 179613858 -17581574 + MIR SINE MIR 39 151 -125 2 1955 483 18 0 0 chr1 179615091 179615147 -17580285 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 1955 270 0 0 0 chr1 179615441 179615471 -17579961 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1955 228 327 63 9 chr1 179615472 179615583 -17579849 + MIRb SINE MIR 97 213 -55 2 1955 245 292 15 0 chr1 179615596 179615661 -17579771 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 2 1955 1375 90 0 11 chr1 179616113 179616304 -17579128 - B2_Mm2 SINE B2 -5 190 2 2 1955 21 0 0 0 chr1 179617026 179617047 -17578385 + AT_rich Low_complexity Low_complexity 1 21 0 2 1955 615 117 56 167 chr1 179617160 179617304 -17578128 - B1_Mur1 SINE Alu -11 138 11 2 1955 1663 27 0 0 chr1 179617930 179618118 -17577314 + B2_Mm1a SINE B2 2 189 -4 2 1955 827 183 0 7 chr1 179618321 179618464 -17576968 + B1_Mus1 SINE Alu 1 142 -6 2 1955 349 201 133 67 chr1 179618526 179618638 -17576794 + L1MA6 LINE L1 6125 6249 -51 2 1955 465 260 121 8 chr1 179618638 179618770 -17576662 + B1_Mur1 SINE Alu 2 148 -1 2 1955 349 201 133 67 chr1 179618770 179618822 -17576610 + L1MA6 LINE L1 6250 6300 0 2 1955 462 215 45 27 chr1 179619164 179619274 -17576158 + RMER2 LTR ERV1 5 116 -451 2 1955 579 221 96 176 chr1 179619266 179619579 -17575853 + RMER2 LTR ERV1 253 540 -27 2 1955 288 247 23 34 chr1 179619828 179619851 -17575581 + polypurine Low_complexity Low_complexity 6 28 0 2 1955 1115 109 6 0 chr1 179619851 179620025 -17575407 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 2 1955 288 247 23 34 chr1 179620025 179620089 -17575343 + polypurine Low_complexity Low_complexity 29 91 0 2 1955 543 56 0 0 chr1 179620503 179620574 -17574858 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1955 204 268 51 40 chr1 179620826 179621001 -17574431 + (ATGTG)n Simple_repeat Simple_repeat 3 179 0 2 1955 328 184 41 58 chr1 179620877 179620998 -17574434 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 2 1955 406 308 0 45 chr1 179621002 179621114 -17574318 - RSINE1 SINE B4 -1 164 58 2 1955 218 318 139 0 chr1 179621170 179621299 -17574133 - MIRb SINE MIR -67 201 55 2 1955 1069 272 44 44 chr1 179621605 179621817 -17573615 + MTEa LTR MaLR 1 215 -164 2 1955 937 158 135 10 chr1 179621817 179622009 -17573423 - B3 SINE B2 0 216 1 2 1955 1069 272 44 44 chr1 179622009 179622111 -17573321 + MTEa LTR MaLR 216 315 -64 2 1955 360 0 0 0 chr1 179622136 179622176 -17573256 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1955 1023 152 0 0 chr1 179622286 179622464 -17572968 + CT-rich Low_complexity Low_complexity 1 178 0 2 1955 559 190 50 7 chr1 179622474 179622609 -17572823 - B4 SINE B4 -46 246 106 2 1955 195 248 61 0 chr1 179623001 179623093 -17572339 - MIRc SINE MIR -98 178 80 2 1955 552 281 40 24 chr1 179623478 179623678 -17571754 + ID_B1 SINE B4 66 271 -21 2 1955 286 271 200 35 chr1 179624037 179624182 -17571250 - MIRb SINE MIR -56 212 44 2 1955 335 274 23 116 chr1 179624653 179624826 -17570606 + B4A SINE B4 1 157 -135 2 1955 243 211 0 0 chr1 179624928 179624942 -17570490 + (TA)n Simple_repeat Simple_repeat 1 14 0 2 1955 294 29 0 0 chr1 179624942 179624977 -17570455 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1955 243 211 0 0 chr1 179624977 179625019 -17570413 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1955 404 189 12 63 chr1 179625191 179625308 -17570124 + ID2 SINE ID 4 114 -38 2 1955 298 250 46 74 chr1 179625602 179625710 -17569722 + MIRc SINE MIR 15 119 -149 2 1955 231 258 0 31 chr1 179625995 179626059 -17569373 - ID4_ SINE ID -17 66 5 2 1955 396 0 0 0 chr1 179626290 179626334 -17569098 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1955 1367 105 16 0 chr1 179627092 179627283 -17568149 - B2_Mm2 SINE B2 0 195 2 2 1955 185 304 0 0 chr1 179627297 179627343 -17568089 + MER5B DNA MER1_type 4 49 -129 2 1955 393 225 0 0 chr1 179627349 179627420 -17568012 - ID4 SINE ID -11 72 2 2 1955 1629 207 83 27 chr1 179627438 179627775 -17567657 - MTEa LTR MaLR 0 379 24 2 1955 516 234 236 111 chr1 179627824 179628040 -17567392 - ORR1D1 LTR MaLR 0 374 132 2 1955 834 207 0 0 chr1 179628052 179628231 -17567201 + GA-rich Low_complexity Low_complexity 2 180 0 2 1955 271 222 200 0 chr1 179628246 179628336 -17567096 + L1MB7 LINE L1 5905 6012 -166 2 1955 2765 172 29 14 chr1 179628342 179628892 -17566540 + RLTR31_Mm LTR ERVK 1 557 -4 2 1955 1338 70 0 6 chr1 179628914 179629086 -17566346 - B2_Mm2 SINE B2 -24 171 1 2 1955 326 292 108 0 chr1 179629093 179629223 -17566209 + L1MB7 LINE L1 6032 6175 -9 2 1955 250 160 0 0 chr1 179629295 179629345 -17566087 + T-rich Low_complexity Low_complexity 130 179 0 2 1955 691 156 80 15 chr1 179630316 179630453 -17564979 - B1_Mus2 SINE Alu 0 147 2 2 1955 297 264 106 32 chr1 179631270 179631364 -17564068 - B3A SINE B2 -97 101 1 2 1955 477 50 0 0 chr1 179631677 179631737 -17563695 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 2 1955 650 229 7 7 chr1 179631933 179632078 -17563354 + B1_Mur1 SINE Alu 2 146 -3 2 1955 617 0 14 0 chr1 179633404 179633477 -17561955 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1955 353 197 50 50 chr1 179633823 179633903 -17561529 + RSINE1 SINE B4 12 91 -74 2 1955 189 0 0 0 chr1 179634351 179634372 -17561060 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1955 792 318 103 9 chr1 179634444 179634793 -17560639 - MER74B LTR ERVL -161 461 80 2 1955 709 221 94 146 chr1 179634800 179635045 -17560387 + B4A SINE B4 1 242 -50 2 1955 405 0 0 0 chr1 179635045 179635090 -17560342 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1955 709 221 94 146 chr1 179635090 179635152 -17560280 + B4A SINE B4 243 292 0 2 1955 289 307 69 0 chr1 179636181 179636282 -17559150 - LTR16A LTR ERVL -1 450 343 2 1955 2598 183 48 66 chr1 179636284 179636400 -17559032 - Lx5 LINE L1 -22 7028 6905 2 1955 369 0 0 0 chr1 179636400 179636441 -17558991 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1955 2598 183 48 66 chr1 179636441 179636885 -17558547 - Lx5 LINE L1 -146 6904 6478 2 1955 260 282 81 40 chr1 179637058 179637206 -17558226 + ID_B1 SINE B4 1 154 -70 2 1955 271 197 49 62 chr1 179637161 179637242 -17558190 + PB1 SINE Alu 31 110 -17 2 1955 228 35 0 0 chr1 179637315 179637344 -17558088 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 2 1955 1115 172 58 14 chr1 179637556 179637763 -17557669 + B3 SINE B2 1 216 0 2 1955 303 254 0 56 chr1 179637999 179638070 -17557362 + ID4_ SINE ID 6 72 -11 2 1955 21 0 0 0 chr1 179638392 179638413 -17557019 + AT_rich Low_complexity Low_complexity 1 21 0 3 1955 865 269 256 8 chr1 179638431 179638825 -17556607 - Lx8 LINE L1 -29 7444 6953 3 1955 267 194 177 0 chr1 179639349 179639411 -17556021 + ID2 SINE ID 2 74 -9 3 1955 339 308 84 0 chr1 179639447 179639554 -17555878 + PB1D10 SINE Alu 1 116 -1 3 1955 802 191 119 0 chr1 179639761 179639929 -17555503 + MLT1C LTR MaLR 7 194 -273 3 1955 180 97 0 0 chr1 179639969 179640000 -17555432 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1955 1981 164 46 107 chr1 179640168 179640606 -17554826 + RLTR25A LTR ERVK 44 454 -649 3 1955 21 0 0 0 chr1 179640933 179640954 -17554478 + AT_rich Low_complexity Low_complexity 1 21 0 3 1955 491 236 59 181 chr1 179641165 179641403 -17554029 + RLTR25A LTR ERVK 573 781 -247 3 1955 404 260 32 16 chr1 179641380 179641505 -17553927 + RLTR25A LTR ERVK 902 1028 0 3 1955 311 299 84 94 chr1 179641625 179641828 -17553604 + RMER15 LTR ERVL 361 561 -14 3 1955 321 316 55 55 chr1 179641821 179641985 -17553447 + MLT1C LTR MaLR 301 464 -3 3 1955 195 139 0 0 chr1 179642126 179642162 -17553270 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1955 469 89 12 25 chr1 179642169 179642250 -17553182 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 3 1955 289 223 154 14 chr1 179642265 179642359 -17553073 + B1F2 SINE Alu 34 138 -12 3 1955 26 30 0 0 chr1 179642466 179642499 -17552933 + AT_rich Low_complexity Low_complexity 1 33 0 3 1955 608 252 30 90 chr1 179642535 179642701 -17552731 - B3A SINE B2 -42 156 1 3 1955 354 231 22 0 chr1 179643264 179643355 -17552077 - L1M5 LINE L1 -1950 4196 4104 3 1955 248 282 69 14 chr1 179643379 179643451 -17551981 + ID4_ SINE ID 2 77 -6 3 1955 341 200 0 0 chr1 179643577 179643642 -17551790 - PB1 SINE Alu -7 120 56 3 1955 328 329 119 36 chr1 179643883 179644268 -17551164 - L1M5 LINE L1 -3514 2632 2216 3 1955 374 224 13 0 chr1 179644302 179644378 -17551054 + MTEa LTR MaLR 1 77 -302 3 1955 720 221 58 29 chr1 179644425 179644597 -17550835 + MTEa LTR MaLR 195 371 -8 3 1955 1577 302 93 51 chr1 179644611 179645204 -17550228 + MER21B LTR ERV1 56 673 -190 3 1955 517 290 89 81 chr1 179645598 179645782 -17549650 + MER21B LTR ERV1 626 801 -62 3 1955 1397 90 16 5 chr1 179645782 179645972 -17549460 + B2_Mm2 SINE B2 1 192 -3 3 1955 517 290 89 81 chr1 179645972 179646023 -17549409 + MER21B LTR ERV1 802 863 0 3 1955 334 277 84 11 chr1 179646035 179646130 -17549302 - MER21B LTR ERV1 -137 726 625 3 1955 900 276 23 26 chr1 179646944 179647208 -17548224 + RMER5 LTR ERV1 262 524 -10 3 1955 641 156 63 32 chr1 179647212 179647338 -17548094 + B1_Mm SINE Alu 2 131 -16 3 1955 216 158 0 0 chr1 179648072 179648110 -17547322 + CT-rich Low_complexity Low_complexity 2 39 0 3 1955 708 255 55 25 chr1 179648152 179648324 -17547108 - ID_B1 SINE B4 -15 209 31 3 1955 204 40 0 0 chr1 179648324 179648349 -17547083 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 3 1955 708 255 55 25 chr1 179648349 179648377 -17547055 - ID SINE ID -194 30 3 3 1955 231 308 31 0 chr1 179648381 179648446 -17546986 - ID4_ SINE ID 0 83 17 3 1955 299 250 41 20 chr1 179649577 179649675 -17545757 - MTEa LTR MaLR 0 379 280 3 1955 3457 157 83 5 chr1 179649955 179650595 -17544837 + RMER6C LTR ERVK 1 690 0 3 1955 396 32 63 0 chr1 179650622 179650685 -17544747 + L1Md_F3 LINE L1 6518 6584 0 3 1955 195 69 0 0 chr1 179650718 179650747 -17544685 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1955 482 234 21 0 chr1 179650771 179650865 -17544567 - RSINE1 SINE B4 -68 97 2 3 1955 839 156 0 28 chr1 179651376 179651521 -17543911 + B1_Mur3 SINE Alu 9 149 0 3 1955 545 296 22 14 chr1 179651768 179651991 -17543441 - L1_Mur3 LINE L1 -4017 1863 1639 3 1955 746 112 0 0 chr1 179652015 179652122 -17543310 - B1_Mur2 SINE Alu -1 148 42 3 1955 227 198 67 77 chr1 179652062 179652166 -17543266 - RLTR25B LTR ERVK -529 499 397 3 1955 270 218 0 35 chr1 179652210 179652267 -17543165 - PB1D9 SINE Alu -61 59 5 3 1955 227 156 0 0 chr1 179652267 179652312 -17543120 - L1_Rod LINE L1 -4178 1669 1625 3 1955 2118 250 99 118 chr1 179652306 179652416 -17543016 - RMER1C Other Other -16 1326 1221 3 1955 1166 106 0 11 chr1 179652416 179652598 -17542834 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1955 2118 262 70 142 chr1 179652598 179653892 -17541540 - RMER1C Other Other -122 1220 242 3 1955 366 23 0 0 chr1 179653892 179653935 -17541497 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1955 1553 284 15 188 chr1 179653935 179654181 -17541251 - RMER1C Other Other -1101 241 11 3 1955 253 329 43 43 chr1 179654825 179655082 -17540350 - L1_Rod LINE L1 -4268 1579 1323 3 1955 826 221 79 0 chr1 179655657 179655847 -17539585 - B3 SINE B2 -11 205 1 3 1955 258 256 307 98 chr1 179656140 179656441 -17538991 - RLTR16 LTR ERVK -44 461 99 3 1955 290 257 0 0 chr1 179656883 179656957 -17538475 + G-rich Low_complexity Low_complexity 1 74 0 3 1955 226 203 44 59 chr1 179657507 179657575 -17537857 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 3 1955 239 186 102 0 chr1 179657900 179657959 -17537473 + MTE2b LTR MaLR 314 378 -1 3 1955 773 209 0 29 chr1 179658807 179658945 -17536487 - RSINE1 SINE B4 -27 138 5 3 1955 743 222 85 12 chr1 179659128 179659292 -17536140 + MTEa LTR MaLR 3 178 -201 3 1955 348 143 0 0 chr1 179660177 179660247 -17535185 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 3 1955 718 191 73 7 chr1 179660255 179660392 -17535040 - B1_Mus1 SINE Alu -1 147 2 3 1955 537 250 55 60 chr1 179660490 179660673 -17534759 - B3A SINE B2 -16 182 1 3 1955 33 43 0 0 chr1 179661057 179661104 -17534328 + AT_rich Low_complexity Low_complexity 1 47 0 3 1955 1833 166 15 85 chr1 179661367 179661769 -17533663 + ORR1D1 LTR MaLR 1 374 0 3 1955 562 254 150 1 chr1 179661881 179662025 -17533407 + B3A SINE B2 1 164 -31 3 1955 180 111 0 0 chr1 179662025 179662052 -17533380 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1955 452 272 119 17 chr1 179662052 179662083 -17533349 + B2_Mm2 SINE B2 165 194 -1 3 1955 228 270 117 29 chr1 179662477 179662580 -17532852 + L1M2 LINE L1 5705 5816 -481 3 1955 198 300 32 32 chr1 179662913 179663006 -17532426 + MIR SINE MIR 30 122 -140 3 1955 235 277 0 30 chr1 179663439 179663506 -17531926 - MTD LTR MaLR -183 236 172 3 1955 717 227 80 141 chr1 179663850 179663886 -17531546 - B3A SINE B2 -8 187 153 3 1955 387 0 0 0 chr1 179663886 179663929 -17531503 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1955 717 273 19 6 chr1 179663929 179664080 -17531352 - B3A SINE B2 -44 154 1 3 1955 25 75 0 0 chr1 179664531 179664584 -17530848 + AT_rich Low_complexity Low_complexity 1 53 0 3 1955 1152 206 91 33 chr1 179664586 179664830 -17530602 + ORR1C2-int LTR MaLR 737 993 -377 3 1955 438 36 0 0 chr1 179664830 179664886 -17530546 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1955 1152 206 91 33 chr1 179664886 179664917 -17530515 + ORR1C2-int LTR MaLR 994 1028 -342 3 1955 1153 29 7 0 chr1 179664921 179665060 -17530372 + B1_Mus2 SINE Alu 8 147 0 3 1955 460 81 35 0 chr1 179665060 179665146 -17530286 + (CAAAA)n Simple_repeat Simple_repeat 1 89 0 3 1955 1728 173 54 48 chr1 179665148 179665519 -17529913 + ORR1C2-int LTR MaLR 1137 1509 0 3 1955 1128 231 90 11 chr1 179665519 179665782 -17529650 + ORR1C2 LTR MaLR 101 384 0 3 1955 289 338 35 14 chr1 179666416 179666557 -17528875 + MIRb SINE MIR 55 198 -70 3 1955 261 0 0 0 chr1 179666987 179667016 -17528416 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 3 1955 278 288 49 12 chr1 179667114 179667195 -17528237 + PB1D10 SINE Alu 33 116 -1 3 1955 252 283 27 0 chr1 179667196 179667269 -17528163 + ID4 SINE ID 1 75 -77 3 1955 405 0 0 0 chr1 179667733 179667778 -17527654 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1955 762 69 0 0 chr1 179668162 179668263 -17527169 + (TTTC)n Simple_repeat Simple_repeat 1 101 0 3 1955 657 119 0 0 chr1 179668269 179668370 -17527062 + (CATA)n Simple_repeat Simple_repeat 3 103 0 3 1955 1019 54 0 0 chr1 179668370 179668500 -17526932 - B2_Mm2 SINE B2 -42 153 24 3 1955 449 160 59 0 chr1 179668532 179668592 -17526840 + polypyrimidine Low_complexity Low_complexity 65 128 0 3 1955 1177 44 0 53 chr1 179668592 179668782 -17526650 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 3 1955 449 160 59 0 chr1 179668782 179668840 -17526592 + polypyrimidine Low_complexity Low_complexity 4 64 0 3 1955 731 143 115 13 chr1 179668855 179668968 -17526464 - Lx2B LINE L1 -5 6995 6883 3 1955 207 69 0 0 chr1 179668968 179668997 -17526435 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 3 1955 731 143 115 13 chr1 179668997 179669039 -17526393 - Lx2B LINE L1 -118 6882 6825 3 1955 1299 111 0 6 chr1 179669038 179669220 -17526212 + Lx2B LINE L1 6634 6814 -186 3 1955 318 148 0 0 chr1 179669400 179669454 -17525978 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1955 1257 85 0 0 chr1 179669460 179669624 -17525808 - B2_Mm2 SINE B2 -31 164 1 3 1955 332 223 99 69 chr1 179669927 179670028 -17525404 + PB1D10 SINE Alu 1 104 -13 3 1955 1595 37 21 5 chr1 179670159 179670348 -17525084 - B2_Mm1t SINE B2 -1 192 1 3 1955 372 210 0 0 chr1 179670466 179670547 -17524885 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1955 697 237 17 44 chr1 179670550 179670731 -17524701 - B3A SINE B2 -16 182 7 3 1955 253 209 292 21 chr1 179671298 179671449 -17523983 - B3A SINE B2 0 198 1 3 1955 212 343 26 61 chr1 179672502 179672617 -17522815 - MIRc SINE MIR -155 113 3 3 1955 402 319 8 40 chr1 179672643 179672767 -17522665 - PB1 SINE Alu -7 120 1 3 1955 309 240 67 13 chr1 179674350 179674438 -17520994 + B1F SINE Alu 11 104 -45 3 1955 2892 89 149 0 chr1 179674617 179675080 -17520352 - RLTR47_MM LTR ERV1 0 532 1 3 1955 475 287 48 37 chr1 179675148 179675416 -17520016 - MuLV-int LTR ERV1 -80 7526 7256 3 1955 414 361 0 0 chr1 179675958 179676149 -17519283 - MMERGLN-int LTR ERV1 -2009 5547 5357 3 1955 1760 277 76 38 chr1 179676286 179677389 -17518043 - MuRRS4-int LTR ERV1 -2465 5313 3533 3 1955 189 0 0 0 chr1 179677389 179677410 -17518022 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 3 1955 1411 299 71 60 chr1 179677410 179677519 -17517913 - MuRRS4-int LTR ERV1 -3516 4262 4140 3 1955 1567 324 63 72 chr1 179677577 179678859 -17516573 - MuRRS4-int LTR ERV1 -5216 2562 1293 3 1955 1183 88 7 0 chr1 179678859 179679006 -17516426 + B1_Mus1 SINE Alu 1 148 0 3 1955 227 54 27 0 chr1 179679015 179679052 -17516380 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1955 366 312 53 65 chr1 179679408 179679454 -17515978 - MuRRS4-int LTR ERV1 -6798 808 768 3 1955 6745 104 46 12 chr1 179679454 179680404 -17515028 - RLTR13C1 LTR ERVK 0 983 1 3 1955 469 287 72 51 chr1 179680404 179680763 -17514669 - MuRRS4-int LTR ERV1 -3787 903 491 3 1955 207 0 0 0 chr1 179681181 179681204 -17514228 + (C)n Simple_repeat Simple_repeat 1 23 0 3 1955 1976 107 218 0 chr1 179681204 179681594 -17513838 - RLTR47_MM LTR ERV1 -52 480 5 3 1955 1723 167 69 160 chr1 179681789 179682295 -17513137 - RLTR25A LTR ERVK -218 885 426 3 1955 568 276 26 0 chr1 179682768 179682920 -17512512 - RSINE1 SINE B4 -8 157 2 3 1955 183 191 15 31 chr1 179683578 179683643 -17511789 + GA-rich Low_complexity Low_complexity 2 65 0 4 1955 1545 203 122 47 chr1 179683755 179684164 -17511268 + RLTR20B3 LTR ERVK 33 472 -105 4 1955 1432 68 40 0 chr1 179684251 179684427 -17511005 - B2_Mm2 SINE B2 -11 184 2 4 1955 506 241 88 68 chr1 179684844 179685039 -17510393 - MLT2B1 LTR ERVL -29 533 333 4 1955 1055 239 87 12 chr1 179685061 179685302 -17510130 + ORR1D2 LTR MaLR 40 298 -72 4 1955 1409 242 88 95 chr1 179685302 179685799 -17509633 - ERVL-B4-int LTR ERVL -2333 3381 2888 4 1955 591 221 26 97 chr1 179685877 179686000 -17509432 - RSINE1 SINE B4 -19 146 28 4 1955 2374 158 94 28 chr1 179686000 179686094 -17509338 - RLTR16 LTR ERVK -4 501 401 4 1955 189 0 0 0 chr1 179686094 179686115 -17509317 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1955 2374 158 94 28 chr1 179686115 179686488 -17508944 - RLTR16 LTR ERVK -105 400 3 4 1955 591 221 26 97 chr1 179686488 179686519 -17508913 - RSINE1 SINE B4 -138 27 3 4 1955 538 289 63 6 chr1 179686519 179686722 -17508710 - ERVL-B4-int LTR ERVL -2780 2981 2752 4 1955 2675 164 20 10 chr1 179687039 179687531 -17507901 - RLTR16 LTR ERVK -8 497 1 4 1955 639 254 46 0 chr1 179687533 179687706 -17507726 - ERVL-B4-int LTR ERVL -3430 2284 2104 4 1955 180 0 0 0 chr1 179687708 179687728 -17507704 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1955 264 224 0 17 chr1 179687993 179688052 -17507380 - ID4_ SINE ID -25 58 1 4 1955 2985 21 2 188 chr1 179688240 179688719 -17506713 + RLTR10 LTR ERVK 1 390 0 4 1955 17171 25 1 1 chr1 179688728 179690674 -17504758 + RLTR10-int LTR ERVK 41 1984 -3 4 1955 2985 21 2 188 chr1 179690676 179691155 -17504277 + RLTR10 LTR ERVK 1 390 0 4 1955 682 111 30 38 chr1 179691165 179691282 -17504150 - B1_Mus1 SINE Alu -9 139 21 4 1955 1297 55 0 0 chr1 179691638 179691784 -17503648 + B1_Mm SINE Alu 2 147 0 4 1955 302 283 32 23 chr1 179691877 179692007 -17503425 + B1F1 SINE Alu 14 146 -3 4 1955 316 277 57 78 chr1 179692211 179692352 -17503080 - B2_Mm2 SINE B2 -57 138 1 4 1955 22 0 0 0 chr1 179693672 179693694 -17501738 + AT_rich Low_complexity Low_complexity 1 22 0 4 1955 709 263 43 32 chr1 179694829 179695014 -17500418 + B3 SINE B2 5 191 -25 4 1955 1170 69 14 0 chr1 179695492 179695636 -17499796 + B1_Mus1 SINE Alu 2 147 -1 4 1955 608 181 96 24 chr1 179695696 179695865 -17499567 - B3 SINE B2 -4 194 10 4 1955 282 289 36 0 chr1 179695792 179695875 -17499557 - RSINE1 SINE B4 -79 86 1 4 1955 1250 36 0 0 chr1 179696372 179696510 -17498922 + B1_Mus1 SINE Alu 1 138 -10 4 1955 418 280 9 0 chr1 179696826 179696933 -17498499 - PB1D7 SINE Alu 0 120 13 4 1955 1702 174 133 32 chr1 179696974 179697058 -17498374 + MTC LTR MaLR 1 86 -335 4 1955 1365 113 11 0 chr1 179697058 179697244 -17498188 + B2_Mm2 SINE B2 2 189 -6 4 1955 1702 174 133 32 chr1 179697244 179697534 -17497898 + MTC LTR MaLR 87 413 -8 4 1955 188 122 0 24 chr1 179697723 179697765 -17497667 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1955 396 0 0 0 chr1 179697990 179698034 -17497398 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 1955 351 286 0 35 chr1 179698056 179698143 -17497289 - B1F SINE Alu -65 84 1 4 244 440 307 17 17 chr1 179699647 179699763 -17495669 - PB1 SINE Alu -11 116 1 4 1956 27 92 0 0 chr1 179699953 179700029 -17495403 + AT_rich Low_complexity Low_complexity 1 76 0 4 1956 275 393 64 0 chr1 179700361 179700501 -17494931 - MamSINE1 SINE tRNA -70 220 72 4 1956 207 0 0 0 chr1 179701456 179701479 -17493953 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1956 22 0 0 0 chr1 179701589 179701611 -17493821 + AT_rich Low_complexity Low_complexity 1 22 0 4 1956 312 295 113 77 chr1 179701728 179702006 -17493426 + ORR1E LTR MaLR 84 363 -11 4 1956 25 31 0 0 chr1 179702009 179702041 -17493391 + AT_rich Low_complexity Low_complexity 1 32 0 4 1956 888 192 34 17 chr1 179702952 179703169 -17492263 + B3 SINE B2 2 216 0 4 1956 303 246 0 0 chr1 179704018 179704075 -17491357 + ID4_ SINE ID 2 58 -25 4 1956 1359 98 5 27 chr1 179704906 179705094 -17490338 + B2_Mm1t SINE B2 2 185 -8 4 1956 441 299 28 0 chr1 179707155 179707262 -17488170 + B1F SINE Alu 16 125 -24 4 1956 349 302 49 25 chr1 179707158 179707280 -17488152 + ID_B1 SINE B4 100 224 0 4 1956 268 181 123 14 chr1 179707872 179707945 -17487487 - L1MB7 LINE L1 -9 6175 6095 4 1956 21 36 0 0 chr1 179707966 179707994 -17487438 + AT_rich Low_complexity Low_complexity 1 28 0 4 1956 1149 103 0 7 chr1 179708086 179708232 -17487200 + B1_Mus1 SINE Alu 2 146 -2 4 1956 205 247 0 13 chr1 179708236 179708314 -17487118 + A-rich Low_complexity Low_complexity 4 80 0 4 1956 3666 30 0 0 chr1 179708534 179708930 -17486502 - MTA_Mm LTR MaLR 0 396 1 4 1956 353 269 86 48 chr1 179709058 179709327 -17486105 + L1ME2 LINE L1 5688 5966 -198 4 1956 185 370 14 0 chr1 179710434 179710507 -17484925 + L2a LINE L2 3335 3408 -18 4 1956 22 35 0 0 chr1 179710679 179710708 -17484724 + AT_rich Low_complexity Low_complexity 1 29 0 4 1956 803 217 132 11 chr1 179710709 179710891 -17484541 - B3 SINE B2 -12 204 1 4 1956 299 243 34 93 chr1 179711089 179711207 -17484225 + B1F1 SINE Alu 39 149 0 4 1956 1004 78 0 0 chr1 179711325 179711454 -17483978 + B1_Mm SINE Alu 12 140 -7 4 1956 2513 87 19 0 chr1 179711487 179711808 -17483624 + ORR1A2 LTR MaLR 1 327 0 4 1956 248 236 36 0 chr1 179711950 179712005 -17483427 - B4 SINE B4 -230 62 6 4 1956 234 248 50 25 chr1 179712100 179712116 -17483316 + ORR1B1-int LTR MaLR 632 650 -859 4 1956 791 143 41 35 chr1 179712116 179712239 -17483193 + B1_Mus1 SINE Alu 1 124 -24 4 1956 243 0 0 0 chr1 179712239 179712266 -17483166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1956 791 143 41 35 chr1 179712266 179712287 -17483145 + B1_Mus1 SINE Alu 125 146 -2 4 1956 243 0 0 0 chr1 179714431 179714458 -17480974 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1956 264 100 0 0 chr1 179714474 179714514 -17480918 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1956 258 56 0 0 chr1 179715901 179715937 -17479495 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1956 22 56 0 0 chr1 179716617 179716653 -17478779 + AT_rich Low_complexity Low_complexity 1 36 0 4 1956 441 103 0 0 chr1 179717645 179717713 -17477719 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 4 1956 695 179 24 8 chr1 179718039 179718163 -17477269 + ID_B1 SINE B4 91 216 -8 4 1956 228 214 0 0 chr1 179719042 179719084 -17476348 + 5S rRNA rRNA 1 42 -79 4 1956 1364 174 226 0 chr1 179719380 179719685 -17475747 + ORR1D1 LTR MaLR 1 374 0 4 1956 1614 205 109 30 chr1 179719685 179720087 -17475345 + ORR1D1-int LTR MaLR 1 434 -936 4 1956 713 272 49 44 chr1 179720089 179720293 -17475139 + B3 SINE B2 6 210 -6 4 1956 451 248 17 1 chr1 179720321 179720439 -17474993 + PB1D7 SINE Alu 1 120 0 4 1956 227 87 0 42 chr1 179720459 179720507 -17474925 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 4 1956 1117 94 0 0 chr1 179720676 179720814 -17474618 + B1_Mus1 SINE Alu 2 139 -9 4 1956 217 0 29 29 chr1 179720814 179720848 -17474584 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1956 2452 176 265 42 chr1 179720865 179721465 -17473967 - RMER19A LTR ERVK -2 735 2 4 1956 291 210 32 16 chr1 179721695 179721758 -17473674 + MLT1K LTR MaLR 193 256 -339 4 1956 450 111 0 27 chr1 179722699 179722773 -17472659 + B1_Mur3 SINE Alu 78 149 0 4 1956 345 239 81 19 chr1 179724239 179724368 -17471064 - L1MA4A LINE L1 -358 5942 5805 4 1956 360 142 124 15 chr1 179724559 179724654 -17470778 + B1_Mur4 SINE Alu 20 150 0 4 1956 240 35 0 0 chr1 179725637 179725666 -17469766 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1956 223 197 0 57 chr1 179726634 179726704 -17468728 + C-rich Low_complexity Low_complexity 4 69 0 4 1956 253 345 15 32 chr1 179727360 179727464 -17467968 - ID4 SINE ID -49 103 2 4 1956 615 275 66 61 chr1 179727631 179727761 -17467671 - B3 SINE B2 -1 215 79 4 1956 1402 164 4 30 chr1 179727761 179727993 -17467439 + URR1A DNA MER1_type 1 226 0 4 1956 615 275 66 61 chr1 179727993 179728075 -17467357 - B3 SINE B2 -138 78 2 4 1956 215 288 136 0 chr1 179728161 179728227 -17467205 + ID2 SINE ID 9 83 0 4 1956 1630 190 30 45 chr1 179728820 179729223 -17466209 - RMER17C LTR ERVK -13 397 1 4 1956 323 281 67 20 chr1 179729223 179729308 -17466124 + ORR1A2 LTR MaLR 255 346 0 4 1956 3553 182 16 124 chr1 179729308 179730132 -17465300 + ORR1A2-int LTR MaLR 1 722 -1070 4 1956 3339 61 8 5 chr1 179730132 179730529 -17464903 - MTB LTR MaLR 0 400 3 4 1956 3553 182 16 124 chr1 179730529 179730694 -17464738 + ORR1A2-int LTR MaLR 723 883 -909 4 1956 3124 178 7 2 chr1 179730696 179731254 -17464178 - Lx2 LINE L1 -849 5037 4477 4 1956 9378 115 26 31 chr1 179731255 179733184 -17462248 + Lx2 LINE L1 5042 6977 -20 4 1956 1312 84 0 6 chr1 179733186 179733365 -17462067 + B2_Mm2 SINE B2 15 192 -3 4 1956 343 120 0 0 chr1 179733400 179733450 -17461982 + ORR1A2-int LTR MaLR 1032 1081 -882 4 1956 1539 305 70 4 chr1 179733450 179733997 -17461435 - MYSERV6-int LTR ERVK -7681 1278 696 4 1956 238 246 70 0 chr1 179734685 179734742 -17460690 + MLT2C1 LTR ERVL 459 519 -44 4 1956 295 167 104 15 chr1 179734811 179734878 -17460554 + L2 LINE L2 1231 1303 -2116 4 1956 1280 199 99 3 chr1 179735630 179735932 -17459500 - BGLII_A LTR ERVK -114 331 1 4 1956 3299 136 18 26 chr1 179735932 179736452 -17458980 + ORR1A2-int LTR MaLR 1446 1960 -3 4 1956 1044 154 65 32 chr1 179736455 179736683 -17458749 + ORR1A2 LTR MaLR 1 276 -118 4 1956 597 168 8 15 chr1 179736907 179737040 -17458392 + CT-rich Low_complexity Low_complexity 1 132 0 4 1956 257 150 0 0 chr1 179737080 179737120 -17458312 - B2_Mm2 SINE B2 -66 129 90 4 1956 1972 204 32 51 chr1 179737158 179737665 -17457767 + RLTR24 LTR ERV1 33 529 0 4 1956 1096 226 109 0 chr1 179738086 179738334 -17457098 + MTD LTR MaLR 5 279 -140 4 1956 382 162 54 0 chr1 179738326 179738400 -17457032 + ID_B1 SINE B4 146 223 -1 4 1956 23 0 0 0 chr1 179738418 179738441 -17456991 + AT_rich Low_complexity Low_complexity 1 23 0 4 1956 546 91 0 0 chr1 179738976 179739053 -17456379 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1956 816 175 49 7 chr1 179739472 179739616 -17455816 + B1_Mur4 SINE Alu 1 150 0 4 1956 1073 97 6 19 chr1 179739653 179739811 -17455621 + B2_Mm2 SINE B2 1 156 -39 4 1956 333 0 0 0 chr1 179739813 179739850 -17455582 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1956 855 141 96 7 chr1 179739907 179740043 -17455389 + B1_Mus1 SINE Alu 1 148 0 5 1956 383 243 369 0 chr1 179740288 179740431 -17455001 + B3 SINE B2 1 196 -20 5 1956 24 67 0 0 chr1 179740431 179740476 -17454956 + AT_rich Low_complexity Low_complexity 1 45 0 5 1956 258 311 56 0 chr1 179740627 179740645 -17454787 - ID_B1 SINE B4 -128 96 2 5 1956 303 217 67 0 chr1 179740651 179740711 -17454721 - tRNA-Ala-GCY_ tRNA tRNA -10 65 2 5 1956 377 275 137 5 chr1 179740937 179741127 -17454305 - L1M2 LINE L1 -2229 3914 3700 5 1956 255 61 0 0 chr1 179741291 179741324 -17454108 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1956 462 128 253 11 chr1 179741326 179741421 -17454011 - B1_Mus2 SINE Alu -8 139 22 5 1956 2784 172 47 43 chr1 179741431 179741903 -17453529 + RLTR20D LTR ERVK 6 465 -103 5 1956 441 0 0 0 chr1 179741903 179741952 -17453480 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1956 2784 172 47 43 chr1 179741952 179742038 -17453394 + RLTR20D LTR ERVK 466 565 -3 5 1956 434 260 0 103 chr1 179742060 179742176 -17453256 - B3A SINE B2 -92 106 3 5 1956 836 98 0 15 chr1 179742195 179742329 -17453103 + (TTTC)n Simple_repeat Simple_repeat 1 132 0 5 1956 531 231 81 24 chr1 179742329 179742453 -17452979 - B1_Mur1 SINE Alu -14 135 5 5 1956 318 288 138 20 chr1 179742508 179742703 -17452729 - L1M5 LINE L1 -2522 3624 3407 5 1956 522 172 0 0 chr1 179742727 179742826 -17452606 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1956 2219 137 101 70 chr1 179742827 179743243 -17452189 + RLTR23 LTR ERV1 2 430 0 5 1956 204 40 0 0 chr1 179743268 179743293 -17452139 + (TATG)n Simple_repeat Simple_repeat 2 26 0 5 1956 672 221 22 0 chr1 179743295 179743431 -17452001 - B1F SINE Alu -1 148 10 5 1956 362 329 28 107 chr1 179743505 179743665 -17451767 - B4A SINE B4 -128 164 13 5 1956 1781 90 272 7 chr1 179743665 179743955 -17451477 + ORR1B2 LTR MaLR 1 367 0 5 1956 362 329 28 107 chr1 179743955 179743971 -17451461 - B4A SINE B4 -280 12 2 5 1956 423 0 0 0 chr1 179744142 179744189 -17451243 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1956 1030 113 7 0 chr1 179744192 179744333 -17451099 - B1_Mus1 SINE Alu -6 142 1 5 1956 390 263 158 0 chr1 179744413 179744508 -17450924 - PB1D10 SINE Alu -7 110 1 5 1956 325 240 144 39 chr1 179744699 179744803 -17450629 - PB1D10 SINE Alu 0 117 3 5 1956 832 209 14 0 chr1 179744868 179745007 -17450425 - B1_Mur3 SINE Alu -7 142 2 5 1956 640 235 21 166 chr1 179746451 179746777 -17448655 - RLTR12B LTR ERVK -9 519 241 5 1956 935 220 31 35 chr1 179746780 179747039 -17448393 - RLTR12B LTR ERVK -240 288 31 5 1956 5970 129 141 11 chr1 179747052 179748038 -17447394 - RLTR13D3 LTR ERVK 0 1114 1 5 1956 2333 201 28 33 chr1 179748047 179748564 -17446868 - ETnERV3-int LTR ERVK -1173 6071 5307 5 1956 1970 139 9 41 chr1 179748639 179748977 -17446455 - RLTR15 LTR ERVK 0 359 33 5 1956 550 270 17 1 chr1 179749432 179749568 -17445864 + B1F1 SINE Alu 4 140 -9 5 1956 216 0 0 0 chr1 179749671 179749695 -17445737 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1956 861 228 39 34 chr1 179750699 179750903 -17444529 - B3 SINE B2 -11 205 1 5 1956 337 249 31 60 chr1 179751307 179751451 -17443981 - B3A SINE B2 -28 188 2 5 1956 751 299 19 10 chr1 179751451 179751655 -17443777 - B4A SINE B4 -65 227 22 5 1956 2728 136 49 35 chr1 179751819 179752270 -17443162 - RMER6B LTR ERVK 0 461 5 5 1956 343 288 25 26 chr1 179752524 179752644 -17442788 - ORR1E LTR MaLR -246 124 1 5 1956 1519 212 171 3 chr1 179752666 179753059 -17442373 - MT2A LTR ERVL -69 464 6 5 1956 2406 181 29 2 chr1 179753481 179753891 -17441541 + MTC LTR MaLR 1 421 0 5 1956 373 252 174 40 chr1 179754215 179754364 -17441068 - B3A SINE B2 -29 169 1 5 1956 3117 88 10 2 chr1 179754457 179754854 -17440578 + MTB LTR MaLR 1 400 0 5 1956 1335 207 86 61 chr1 179754854 179755296 -17440136 - RLTR11A LTR ERVK -29 499 47 5 1956 1337 191 75 118 chr1 179755697 179756095 -17439337 + ORR1C2 LTR MaLR 4 384 0 5 1956 246 148 0 0 chr1 179756112 179756166 -17439266 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1956 701 48 0 62 chr1 179756638 179756750 -17438682 - L1Md_F2 LINE L1 0 6582 6478 5 1956 375 149 0 0 chr1 179756779 179756853 -17438579 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 5 1956 270 163 0 39 chr1 179757110 179757152 -17438280 + B1_Mus1 SINE Alu 2 41 -107 5 1956 945 60 30 0 chr1 179757152 179757285 -17438147 - RLTR13A LTR ERVK 0 978 842 5 1956 2792 140 4 34 chr1 179757291 179757795 -17437637 - RLTR13A LTR ERVK -366 489 1 5 1956 756 57 57 0 chr1 179757795 179757899 -17437533 + B1_Mm SINE Alu 37 146 -1 5 1956 2025 184 101 50 chr1 179758156 179758653 -17436779 - RLTR11A LTR ERVK -4 524 3 5 1956 813 184 229 6 chr1 179759122 179759297 -17436135 - B3 SINE B2 -2 214 1 5 1956 354 357 35 0 chr1 179759302 179759445 -17435987 - B1F2 SINE Alu -1 148 1 5 1956 7475 85 15 5 chr1 179759647 179761185 -17434247 - L1_Mus1 LINE L1 0 6567 5014 5 1956 35744 80 1 24 chr1 179761186 179767206 -17428226 - L1Md_F2 LINE L1 -2 6580 725 5 1956 424 243 63 14 chr1 179767206 179767348 -17428084 - L1Md_F2 LINE L1 -5804 812 664 5 1956 347 273 6 106 chr1 179767440 179767600 -17427832 - L1VL1 LINE L1 -6042 380 237 5 1956 181 0 69 0 chr1 179767836 179767865 -17427567 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 5 1956 363 299 212 55 chr1 179768358 179768613 -17426819 + MLT1A0 LTR MaLR 5 299 -66 5 1956 881 152 151 10 chr1 179768887 179769086 -17426346 + MTC LTR MaLR 2 228 -193 5 1956 1155 129 0 0 chr1 179769213 179769383 -17426049 + B2_Mm2 SINE B2 1 170 -25 5 1956 418 207 0 134 chr1 179769448 179769469 -17425963 + MT2B LTR ERVL 150 152 -449 5 1956 801 197 7 0 chr1 179769469 179769606 -17425826 + B1_Mur4 SINE Alu 4 141 -9 5 1956 1116 133 0 22 chr1 179769630 179769814 -17425618 - B2_Mm1t SINE B2 -4 189 10 5 1956 1038 226 20 0 chr1 179770113 179770317 -17425115 - B3 SINE B2 -4 212 5 5 1956 551 178 30 19 chr1 179770534 179771011 -17424421 + (CA)n Simple_repeat Simple_repeat 1 482 0 5 1956 279 180 60 0 chr1 179771048 179771198 -17424234 + (CA)n Simple_repeat Simple_repeat 1 159 0 5 1956 229 209 191 15 chr1 179771373 179771441 -17423991 - ID4 SINE ID -2 81 2 5 1956 465 233 29 10 chr1 179771445 179771549 -17423883 - PB1D10 SINE Alu -6 111 6 5 1956 22 35 0 0 chr1 179771637 179771666 -17423766 + AT_rich Low_complexity Low_complexity 1 29 0 5 1956 808 321 47 30 chr1 179771938 179772301 -17423131 - L1MC1 LINE L1 -108 6225 5857 5 1956 656 282 11 22 chr1 179773549 179773730 -17421702 + ID_B1 SINE B4 1 179 -45 5 1956 691 159 9 0 chr1 179773896 179774009 -17421423 + B1_Mus1 SINE Alu 2 115 -33 5 1956 480 35 0 0 chr1 179774479 179774537 -17420895 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1956 1182 82 7 0 chr1 179774739 179774886 -17420546 + B1_Mus1 SINE Alu 1 148 0 5 1956 368 315 73 9 chr1 179775231 179775340 -17420092 - B1F1 SINE Alu 0 117 2 5 1956 1269 68 0 0 chr1 179775569 179775716 -17419716 + B1_Mus1 SINE Alu 1 147 -1 5 1956 227 31 0 30 chr1 179775892 179775925 -17419507 + (ATG)n Simple_repeat Simple_repeat 1 32 0 5 1956 963 212 71 0 chr1 179776093 179776291 -17419141 - B3 SINE B2 -4 212 1 5 1956 330 26 0 0 chr1 179776930 179776969 -17418463 + (TTG)n Simple_repeat Simple_repeat 3 41 0 5 1956 989 92 0 14 chr1 179776981 179777125 -17418307 + B2_Mm2 SINE B2 2 143 -52 5 1956 324 0 0 0 chr1 179777226 179777262 -17418170 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 5 1956 843 141 15 0 chr1 179777506 179777640 -17417792 + ORR1A2 LTR MaLR 1 136 -191 5 1956 10955 142 73 7 chr1 179777640 179779481 -17415951 + ORR1A2-int LTR MaLR 1 1963 0 5 1956 2406 111 9 0 chr1 179779481 179779805 -17415627 + ORR1A2 LTR MaLR 1 327 0 5 1956 923 250 37 37 chr1 179779875 179780091 -17415341 - B3 SINE B2 0 216 1 5 1956 210 191 0 0 chr1 179780265 179780312 -17415120 + CT-rich Low_complexity Low_complexity 3 49 0 5 1956 484 254 205 13 chr1 179781473 179781776 -17413656 - L1MC3 LINE L1 -95 7690 7330 5 1956 1047 51 0 0 chr1 179781823 179781961 -17413471 + (TG)n Simple_repeat Simple_repeat 1 138 0 5 1956 244 287 23 11 chr1 179782006 179782094 -17413338 - L1MC3 LINE L1 -930 7065 6977 5 1956 1958 166 12 15 chr1 179782175 179782505 -17412927 + ORR1A4 LTR MaLR 1 329 0 5 1956 2205 155 21 49 chr1 179782611 179782997 -17412435 + ORR1C1 LTR MaLR 1 375 -3 5 1956 5964 201 135 15 chr1 179783000 179784347 -17411085 + ORR1C1-int LTR MaLR 1 1509 0 5 1956 1903 174 19 46 chr1 179784347 179784720 -17410712 + ORR1C1 LTR MaLR 1 363 -15 5 1956 318 237 70 78 chr1 179784760 179784816 -17410616 - L1MC3 LINE L1 -1150 6635 6585 5 1956 2325 123 157 3 chr1 179784816 179785198 -17410234 - BGLII_B LTR ERVK 0 441 1 5 1956 318 237 70 78 chr1 179785198 179785269 -17410163 - L1MC3 LINE L1 -1201 6584 6509 5 1956 867 230 47 5 chr1 179785311 179785503 -17409929 + B3 SINE B2 9 208 -8 5 1956 24 32 0 0 chr1 179785550 179785581 -17409851 + AT_rich Low_complexity Low_complexity 1 31 0 5 1956 374 231 413 30 chr1 179785774 179786079 -17409353 - L1MB3 LINE L1 -280 5903 5482 5 1956 366 274 59 0 chr1 179786158 179786260 -17409172 - PB1D9 SINE Alu -1 119 12 5 1956 966 215 112 8 chr1 179786344 179786602 -17408830 - RLTR20B3 LTR ERVK -292 285 1 5 1956 492 238 27 19 chr1 179786605 179786753 -17408679 - L1MB3 LINE L1 -875 5271 5095 5 1956 204 263 79 0 chr1 179786833 179786909 -17408523 - L2 LINE L2 -1142 2277 2196 5 1956 26 0 0 0 chr1 179786976 179787002 -17408430 + AT_rich Low_complexity Low_complexity 1 26 0 5 1956 436 326 29 7 chr1 179787002 179787141 -17408291 + RSINE1 SINE B4 2 143 -22 5 1956 434 337 23 33 chr1 179788879 179789182 -17406250 - L1M4 LINE L1 -404 5780 5479 5 1956 4004 38 0 0 chr1 179789280 179789727 -17405705 + L1Md_T LINE L1 6135 6581 -1 5 1956 2219 170 130 25 chr1 179791619 179791945 -17403487 - RLTR11A LTR ERVK 0 528 188 5 1956 2181 137 29 0 chr1 179791945 179792259 -17403173 - ORR1A2 LTR MaLR 0 327 5 5 1956 2219 170 130 25 chr1 179792259 179792410 -17403022 - RLTR11A LTR ERVK -341 187 1 5 1956 1002 214 0 15 chr1 179792458 179792653 -17402779 + B3 SINE B2 1 192 -24 5 1956 419 208 55 14 chr1 179792742 179792888 -17402544 + Lx9 LINE L1 7493 7644 0 5 1956 828 273 59 45 chr1 179793039 179793327 -17402105 + MTE2a LTR MaLR 72 363 -16 5 1956 411 225 29 29 chr1 179793851 179793956 -17401476 + B3A SINE B2 3 107 -91 6 1956 189 0 0 0 chr1 179793973 179793994 -17401438 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1956 432 0 0 0 chr1 179794054 179794102 -17401330 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1956 2194 157 19 76 chr1 179794376 179794838 -17400594 - BGLII_B LTR ERVK 0 441 6 6 1956 304 304 160 6 chr1 179794846 179795015 -17400417 - L1MEc LINE L1 -4259 2141 1947 6 1956 611 78 0 0 chr1 179795134 179795224 -17400208 - L1Md_F3 LINE L1 0 6584 6495 6 1956 433 284 55 0 chr1 179795230 179795339 -17400093 - PB1D10 SINE Alu -1 116 2 6 1956 39265 41 4 3 chr1 179795385 179801593 -17393839 - L1Md_F2 LINE L1 0 6582 413 6 1956 2672 163 66 19 chr1 179802610 179803124 -17392308 - RMER19B LTR ERVK -12 890 353 6 1956 1018 189 0 192 chr1 179803139 179803420 -17392012 - RMER19B LTR ERVK -675 227 1 6 1956 192 97 0 0 chr1 179803684 179803715 -17391717 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1956 261 0 0 0 chr1 179803867 179803896 -17391536 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1956 341 43 0 21 chr1 179803915 179803962 -17391470 + HAL1-3A_ME LINE L1 1976 2021 -837 6 1956 190 286 31 16 chr1 179804093 179804157 -17391275 + MIRc SINE MIR 100 164 -104 6 1956 876 277 124 19 chr1 179804440 179804809 -17390623 - MYSERV6-int LTR ERVK -6964 1995 1634 6 1956 1642 333 60 36 chr1 179804834 179806010 -17389422 - MYSERV6-int LTR ERVK -7384 1575 372 6 1956 189 107 0 0 chr1 179806304 179806332 -17389100 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6 1956 1159 146 457 35 chr1 179806783 179807096 -17388336 + RLTR41 LTR ERV1 2 446 0 6 1956 294 106 0 0 chr1 179807226 179807273 -17388159 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1956 200 111 28 0 chr1 179807689 179807725 -17387707 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 1956 507 315 33 7 chr1 179807734 179807884 -17387548 - RSINE1 SINE B4 -9 156 3 6 1956 2834 101 35 35 chr1 179807960 179808424 -17387008 - RMER16 LTR ERVK 0 533 70 6 1956 308 246 43 76 chr1 179809029 179809240 -17386192 + RMER17A LTR ERVK 290 493 -258 6 1956 351 362 13 78 chr1 179809206 179809359 -17386073 - MLT1A LTR MaLR -213 161 19 6 1956 646 302 6 30 chr1 179809643 179809810 -17385622 + RSINE1 SINE B4 3 165 0 6 1956 249 346 70 50 chr1 179809651 179809852 -17385580 + B3 SINE B2 10 214 -2 6 1956 779 273 41 15 chr1 179810660 179810857 -17384575 + B4 SINE B4 2 203 -89 6 1956 584 264 78 24 chr1 179810873 179811040 -17384392 + B3 SINE B2 36 211 -5 6 1956 262 196 0 121 chr1 179811069 179811127 -17384305 + B4 SINE B4 241 291 -1 6 1956 559 291 0 30 chr1 179811228 179811359 -17384073 + RSINE1 SINE B4 14 140 -25 6 1956 369 0 0 0 chr1 179811382 179811423 -17384009 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1956 270 160 0 0 chr1 179811445 179811495 -17383937 + GA-rich Low_complexity Low_complexity 1 50 0 6 1956 1240 111 61 0 chr1 179811893 179812073 -17383359 - B2_Mm1t SINE B2 -1 192 2 6 1956 1348 248 7 24 chr1 179812694 179812991 -17382441 + B4A SINE B4 1 292 0 6 1956 223 329 0 0 chr1 179812996 179813069 -17382363 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 6 1956 402 108 0 0 chr1 179813078 179813152 -17382280 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1956 1042 282 109 17 chr1 179813293 179813425 -17382007 + MTE2b LTR MaLR 1 146 -233 6 1956 1749 188 96 38 chr1 179813425 179813823 -17381609 + MTC LTR MaLR 1 421 0 6 1956 1042 282 109 17 chr1 179813823 179814037 -17381395 + MTE2b LTR MaLR 147 379 0 6 1956 3294 58 5 5 chr1 179814122 179814518 -17380914 - MTA_Mm LTR MaLR 0 396 1 6 1956 8076 79 19 68 chr1 179814518 179815673 -17379759 - MTA_Mm-int LTR MaLR 0 1098 1 6 1956 3484 41 8 2 chr1 179815673 179816067 -17379365 - MTA_Mm LTR MaLR 0 396 1 6 1956 601 347 32 24 chr1 179816827 179817078 -17378354 + B4A SINE B4 1 253 -39 6 1956 2734 51 29 49 chr1 179817328 179817677 -17377755 - ORR1A1 LTR MaLR -4 342 1 6 1956 195 100 0 0 chr1 179817863 179817893 -17377539 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 1956 1045 165 0 0 chr1 179818420 179818434 -17376998 - B2_Mm2 SINE B2 -23 172 159 6 1956 405 0 0 0 chr1 179818434 179818479 -17376953 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 6 1956 1045 165 0 0 chr1 179818479 179818634 -17376798 - B2_Mm2 SINE B2 -37 158 4 6 1956 32426 107 10 10 chr1 179818687 179824866 -17370566 - L1_Mus1 LINE L1 0 6567 387 6 1956 180 111 0 0 chr1 179824877 179824904 -17370528 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1956 34949 82 22 10 chr1 179824911 179830763 -17364669 - L1_Mus2 LINE L1 0 6566 399 6 1957 3079 185 136 61 chr1 179831020 179831842 -17363590 - RMER19B LTR ERVK -16 886 3 6 1957 559 250 32 13 chr1 179833063 179833217 -17362215 + B3 SINE B2 57 213 -3 6 1957 2231 210 56 2 chr1 179833253 179833754 -17361678 - RLTR11A LTR ERVK 0 528 1 6 1957 285 98 0 0 chr1 179834356 179834397 -17361035 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 6 1957 9157 7 0 0 chr1 179834409 179835439 -17359993 - L1Md_T LINE L1 0 6582 5553 6 1957 957 18 0 0 chr1 179835439 179835550 -17359882 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 6 1957 1901 28 5 0 chr1 179835577 179835793 -17359639 - L1Md_F2 LINE L1 -96 6486 6270 6 1957 3938 34 0 0 chr1 179835792 179836258 -17359174 + L1_Mm LINE L1 4134 4599 -1284 6 1957 970 88 117 50 chr1 179836293 179836472 -17358960 - B2_Mm2 SINE B2 -3 192 2 6 1957 252 284 12 12 chr1 179836797 179836879 -17358553 + PB1 SINE Alu 43 124 -3 6 1957 300 70 0 0 chr1 179836909 179836952 -17358480 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1957 294 247 11 86 chr1 179837030 179837123 -17358309 - B4A SINE B4 -6 286 201 6 1957 2581 167 35 23 chr1 179837946 179838136 -17357296 + RLTR11A2 LTR ERVK 1 186 -341 6 1957 1729 162 44 9 chr1 179838136 179838454 -17356978 + ORR1A3 LTR MaLR 1 329 0 6 1957 8155 169 62 126 chr1 179838456 179840553 -17354879 + ORR1A3-int LTR MaLR 3 1963 0 6 1957 1738 140 11 75 chr1 179840553 179840901 -17354531 + ORR1A3 LTR MaLR 1 326 0 6 1957 2581 167 35 23 chr1 179840901 179841227 -17354205 + RLTR11A2 LTR ERVK 187 526 -1 6 1957 300 70 0 0 chr1 179841284 179841327 -17354105 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1957 638 165 188 55 chr1 179841888 179842106 -17353326 + MYSERV6-int LTR ERVK 6408 6654 -2305 6 1957 27 0 0 0 chr1 179842366 179842393 -17353039 + AT_rich Low_complexity Low_complexity 1 27 0 6 1957 478 233 7 65 chr1 179842509 179842647 -17352785 + B1_Mur4 SINE Alu 19 148 -2 6 1957 3367 239 42 73 chr1 179842736 179843949 -17351483 + MYSERV16_I-int LTR ERVK 1 1091 -1235 6 1957 250 251 26 47 chr1 179843960 179844152 -17351280 - RMER17C LTR ERVK -140 270 83 6 1957 380 113 0 40 chr1 179844191 179844265 -17351167 + MYSERV16_I-int LTR ERVK 1093 1163 -1163 6 1957 8770 166 51 41 chr1 179844266 179844429 -17351003 - L1_Mur3 LINE L1 -2717 3163 2991 6 1957 225 0 0 0 chr1 179844429 179844454 -17350978 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 1957 8770 173 44 50 chr1 179844454 179846616 -17348816 - L1_Mur3 LINE L1 -2890 2990 859 6 1957 443 284 79 11 chr1 179846610 179846788 -17348644 - L1_Mur3 LINE L1 -7409 319 130 6 1957 6421 54 2 9 chr1 179846813 179847617 -17347815 - L1Md_F2 LINE L1 0 6582 5784 6 1957 10735 44 1 0 chr1 179847617 179849589 -17345843 - L1Md_A LINE L1 -9 6573 4601 6 1957 27633 48 0 1 chr1 179849590 179853648 -17341784 - L1Md_T LINE L1 0 6582 2529 6 1957 2903 41 7 124 chr1 179853648 179854090 -17341342 - RLTR10 LTR ERVK 0 390 1 6 1957 15650 30 29 30 chr1 179854092 179856038 -17339394 - RLTR10-int LTR ERVK -3 1984 41 6 1957 2833 42 7 126 chr1 179856054 179856492 -17338940 - RLTR10 LTR ERVK -4 386 1 6 1957 9817 92 21 1 chr1 179856494 179858938 -17336494 - L1Md_T LINE L1 -3351 2532 100 6 1957 271 272 19 10 chr1 179858961 179859065 -17336367 - L1VL1 LINE L1 -6317 105 1 6 1957 340 261 104 9 chr1 179859137 179859265 -17336167 - L1M4 LINE L1 -555 5616 5479 6 1957 287 223 138 0 chr1 179859268 179859373 -17336059 - L1MA8 LINE L1 0 6291 6174 6 1957 38876 28 0 0 chr1 179859477 179865925 -17329507 - L1Md_T LINE L1 0 6585 85 6 1957 749 232 179 129 chr1 179865930 179866355 -17329077 - MT2A LTR ERVL -72 461 16 6 1957 306 0 0 0 chr1 179867420 179867454 -17327978 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1957 1027 167 0 16 chr1 179867523 179867712 -17327720 - B2_Mm2 SINE B2 -7 188 3 6 1957 649 229 14 0 chr1 179867994 179868138 -17327294 + B3A SINE B2 4 149 -49 6 1957 915 224 211 56 chr1 179869348 179869704 -17325728 - MTD LTR MaLR -8 411 1 6 1957 526 325 55 109 chr1 179869857 179870333 -17325099 - MT2A LTR ERVL -83 450 1 6 1957 332 274 10 21 chr1 179870902 179870999 -17324433 - RSINE1 SINE B4 -68 97 2 6 1957 337 273 22 43 chr1 179871713 179871805 -17323627 + ID_B1 SINE B4 121 210 -14 6 1957 208 197 15 62 chr1 179871805 179871870 -17323562 + GA-rich Low_complexity Low_complexity 3 64 0 6 1957 449 287 0 59 chr1 179872460 179872612 -17322820 + ID_B1 SINE B4 77 219 -5 6 1957 486 272 16 0 chr1 179872763 179872888 -17322544 + ID_B1 SINE B4 94 220 -4 6 1957 898 164 0 7 chr1 179873948 179874089 -17321343 + B1_Mus1 SINE Alu 2 141 -7 6 1957 933 121 18 0 chr1 179874091 179874256 -17321176 + (GAA)n Simple_repeat Simple_repeat 2 169 0 6 1957 377 274 112 8 chr1 179874701 179874826 -17320606 + ID_B1 SINE B4 82 219 -5 6 1957 595 240 69 54 chr1 179874844 179874900 -17320532 + ID_B1 SINE B4 18 222 -1 6 1957 698 146 34 62 chr1 179874900 179875046 -17320386 + B1_Mus2 SINE Alu 6 147 0 6 1957 951 202 43 24 chr1 179875726 179875934 -17319498 + B3 SINE B2 5 216 0 6 1957 317 292 28 45 chr1 179875939 179876115 -17319317 + L1MB3 LINE L1 4958 5130 -1016 6 1957 248 233 0 14 chr1 179876159 179876233 -17319199 + GA-rich Low_complexity Low_complexity 1 73 0 6 1957 1191 284 107 11 chr1 179876334 179876753 -17318679 + Lx5 LINE L1 6605 7047 -3 6 1957 486 253 165 27 chr1 179876762 179877125 -17318307 + L1MB3 LINE L1 5163 5576 -666 6 1957 271 290 14 0 chr1 179877632 179877701 -17317731 + L1MB3 LINE L1 5565 5634 -546 6 1957 216 322 69 53 chr1 179877711 179877842 -17317590 + RSINE1 SINE B4 14 146 -19 6 1957 638 58 11 0 chr1 179877847 179877934 -17317498 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1957 518 268 33 16 chr1 179877934 179878116 -17317316 + L1MB3 LINE L1 5808 5992 -191 6 1957 508 298 30 18 chr1 179878719 179878883 -17316549 + B3A SINE B2 28 193 -5 6 1957 241 274 0 0 chr1 179878908 179878970 -17316462 + L2a LINE L2 3310 3371 -55 6 1957 200 173 39 0 chr1 179879401 179879453 -17315979 + CT-rich Low_complexity Low_complexity 1 54 0 6 1957 21 0 0 0 chr1 179879977 179879998 -17315434 + AT_rich Low_complexity Low_complexity 1 21 0 6 1957 769 204 7 0 chr1 179880356 179880498 -17314934 - B1_Mm SINE Alu 0 147 5 7 1957 221 316 17 28 chr1 179880870 179881049 -17314383 + (CCCTAA)n Simple_repeat Simple_repeat 3 179 0 7 1957 301 352 58 37 chr1 179881121 179881310 -17314122 - LTR86C LTR ERVL -161 460 268 7 1957 634 248 37 42 chr1 179881597 179881812 -17313620 + B3 SINE B2 1 214 -2 7 1957 580 311 114 40 chr1 179882306 179882657 -17312775 - MTEb LTR MaLR -2 377 1 7 1957 303 338 104 8 chr1 179882907 179883041 -17312391 + MER21B LTR ERV1 74 220 -643 7 1957 223 293 12 24 chr1 179883308 179883392 -17312040 + PB1 SINE Alu 11 93 -34 7 1957 2170 271 119 24 chr1 179883679 179883711 -17311721 - Lx8 LINE L1 0 7473 7445 7 1957 2836 127 25 39 chr1 179883711 179883820 -17311612 - MT2C_Mm LTR ERVL 0 475 370 7 1957 198 0 0 0 chr1 179883820 179883842 -17311590 + (CAG)n Simple_repeat Simple_repeat 1 22 0 7 1957 2836 127 25 39 chr1 179883842 179884214 -17311218 - MT2C_Mm LTR ERVL -106 369 3 7 1957 2170 271 119 24 chr1 179884214 179884938 -17310494 - Lx8 LINE L1 -29 7444 6645 7 1957 22 0 0 0 chr1 179885148 179885170 -17310262 + AT_rich Low_complexity Low_complexity 1 22 0 7 1957 1587 258 68 14 chr1 179885170 179885666 -17309766 + Lx8 LINE L1 6197 6653 -991 7 1957 330 67 0 0 chr1 179885779 179885824 -17309608 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 7 1957 468 0 0 0 chr1 179886061 179886113 -17309319 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1957 1758 170 55 3 chr1 179886285 179886633 -17308799 - ORR1C1 LTR MaLR 0 378 13 7 1957 680 176 34 47 chr1 179887467 179887616 -17307816 - B1_Mur2 SINE Alu -2 147 1 7 1957 3336 46 13 0 chr1 179887623 179888018 -17307414 - MTB LTR MaLR 0 400 1 7 1957 261 328 49 8 chr1 179888394 179888517 -17306915 - LTR16A LTR ERVL -99 352 225 7 1957 337 243 27 0 chr1 179888762 179888836 -17306596 - ID4_ SINE ID -6 77 2 7 1957 1146 261 53 73 chr1 179889169 179889525 -17305907 + MTE2b LTR MaLR 16 364 -15 7 1957 304 196 274 9 chr1 179889526 179889639 -17305793 + MIRb SINE MIR 120 262 -6 7 1957 262 139 47 0 chr1 179890058 179890101 -17305331 - ID_B1 SINE B4 -6 218 174 7 1957 261 148 86 129 chr1 179890101 179890123 -17305309 - B1F SINE Alu -1 143 82 7 1957 259 272 0 11 chr1 179890400 179890582 -17304850 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1957 387 242 11 0 chr1 179890698 179890789 -17304643 + PB1 SINE Alu 25 116 -11 7 1957 1995 128 280 53 chr1 179891145 179891617 -17303815 - RMER4B LTR ERVK -2 583 5 7 1957 271 293 0 13 chr1 179891669 179891745 -17303687 - ID4 SINE ID -8 75 1 7 1957 533 42 14 0 chr1 179892386 179892458 -17302974 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1957 968 119 43 19 chr1 179893023 179893185 -17302247 - RMER16 LTR ERVK 0 533 368 7 1957 1329 58 51 17 chr1 179893185 179893360 -17302072 + B2_Mm2 SINE B2 1 181 -14 7 1957 37169 70 6 22 chr1 179893416 179900163 -17295269 - L1Md_F2 LINE L1 -3 6579 98 7 1957 1150 201 28 162 chr1 179900204 179900567 -17294865 - RMER16 LTR ERVK -219 314 1 7 1957 30263 88 47 55 chr1 179900567 179904532 -17290900 - RMER16-int LTR ERVK 0 5406 1450 7 1957 1170 86 0 0 chr1 179904532 179904672 -17290760 + B1_Mus1 SINE Alu 1 140 -8 7 1957 192 77 0 0 chr1 179904672 179904698 -17290734 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1957 30263 88 47 55 chr1 179904698 179905480 -17289952 - RMER16-int LTR ERVK -3957 1449 695 7 1957 600 101 0 22 chr1 179905480 179905571 -17289861 - B1_Mm SINE Alu 0 147 59 7 1957 749 148 0 0 chr1 179905555 179905670 -17289762 + RMER16 LTR ERVK 419 533 0 7 1957 2621 109 23 10 chr1 179905703 179906080 -17289352 + RMER16-int LTR ERVK 309 690 -4716 7 1957 1018 173 0 0 chr1 179906080 179906230 -17289202 + B1_Mur4 SINE Alu 1 150 0 7 1957 594 272 68 7 chr1 179906248 179906396 -17289036 + B3 SINE B2 60 216 0 7 1957 782 340 28 42 chr1 179907023 179907376 -17288056 - ORR1E LTR MaLR -11 348 1 7 1957 265 297 151 26 chr1 179908282 179908434 -17286998 + LTR50 LTR ERVL 17 187 -608 7 1957 1267 157 294 43 chr1 179908449 179908748 -17286684 - ORR1D1 LTR MaLR 0 374 1 7 1957 1096 134 18 52 chr1 179908748 179908977 -17286455 - ORR1D1-int LTR MaLR 0 1370 1150 7 1957 299 181 14 0 chr1 179908977 179909049 -17286383 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1957 922 65 14 0 chr1 179909089 179909228 -17286204 + (TC)n Simple_repeat Simple_repeat 2 142 0 7 1957 705 285 33 57 chr1 179909230 179909442 -17285990 - ID_B1 SINE B4 -13 211 5 7 1957 690 236 0 7 chr1 179909475 179909616 -17285816 - B1F SINE Alu -5 144 5 7 1957 1498 281 23 56 chr1 179909714 179909948 -17285484 - Lx7 LINE L1 -829 6867 6635 7 1957 333 47 0 0 chr1 179909948 179909991 -17285441 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 7 1957 1498 281 23 56 chr1 179909991 179910200 -17285232 - Lx7 LINE L1 -1062 6634 6439 7 1957 1624 44 11 0 chr1 179910200 179910383 -17285049 - B2_Mm1t SINE B2 -8 185 1 7 1957 1498 281 23 56 chr1 179910383 179910459 -17284973 - Lx7 LINE L1 -1258 6438 6364 7 1957 1062 131 56 62 chr1 179910459 179910638 -17284794 + B2_Mm1t SINE B2 2 179 -14 7 1957 325 158 8 18 chr1 179910685 179910750 -17284682 + B2_Mm2 SINE B2 47 114 -102 7 1957 387 0 0 0 chr1 179910765 179910808 -17284624 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 1957 800 244 119 37 chr1 179910822 179911116 -17284316 - Lx7 LINE L1 -1330 6366 6049 7 1957 826 271 151 31 chr1 179911144 179911489 -17283943 + MTD LTR MaLR 12 405 -14 7 1957 303 317 81 16 chr1 179911556 179911742 -17283690 + L2b LINE L2 2375 2572 -847 7 1957 1444 84 16 5 chr1 179911773 179911964 -17283468 - B2_Mm2 SINE B2 -1 194 2 7 1957 645 276 33 0 chr1 179912052 179912204 -17283228 + B3A SINE B2 1 157 -41 7 1957 204 97 0 0 chr1 179912211 179912242 -17283190 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 7 1957 234 353 138 21 chr1 179912357 179912545 -17282887 + L2b LINE L2 2918 3127 -248 7 1957 299 245 10 87 chr1 179912615 179912718 -17282714 + L2a LINE L2 3329 3423 -3 7 1957 515 248 17 0 chr1 179913090 179913207 -17282225 - RLTR5_Mm LTR ERV1 -121 507 389 7 1957 22 0 0 0 chr1 179913850 179913872 -17281560 + GC_rich Low_complexity Low_complexity 1 22 0 7 1957 737 149 0 47 chr1 179914536 179914663 -17280769 - RMER13A LTR ERVK -567 293 173 7 1957 350 264 44 58 chr1 179914905 179915042 -17280390 + ORR1D2 LTR MaLR 1 135 -235 7 1957 875 167 133 29 chr1 179915187 179915360 -17280072 - B2_Mm1t SINE B2 -1 192 2 7 1957 1141 109 0 0 chr1 179915381 179915528 -17279904 - B1_Mus1 SINE Alu 0 148 2 7 1957 210 37 0 0 chr1 179915537 179915564 -17279868 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1957 392 190 52 21 chr1 179915566 179915759 -17279673 - RMER17D2 LTR ERVK -306 503 305 7 1957 1060 154 149 0 chr1 179916002 179916197 -17279235 - URR1A DNA MER1_type 0 226 3 7 1957 233 139 0 0 chr1 179916375 179916418 -17279014 + MLT2D LTR ERVL 1 43 -371 7 1957 256 257 86 0 chr1 179916431 179916501 -17278931 + MLT2C1 LTR ERVL 444 519 -44 7 1957 295 167 104 15 chr1 179916570 179916637 -17278795 + L2 LINE L2 1231 1303 -2116 7 1957 2758 117 35 12 chr1 179917427 179917859 -17277573 - BGLII_A LTR ERVK 0 445 4 7 1957 3452 108 21 4 chr1 179917860 179918382 -17277050 + ORR1A2-int LTR MaLR 1433 1963 0 7 1957 2275 127 12 0 chr1 179918382 179918705 -17276727 + ORR1A2 LTR MaLR 1 327 0 7 1957 262 143 24 0 chr1 179919025 179919067 -17276365 + RLTR24 LTR ERV1 1 43 -486 7 1957 267 146 0 0 chr1 179919067 179919122 -17276310 + (T)n Simple_repeat Simple_repeat 1 55 0 7 1957 253 200 0 0 chr1 179920088 179920128 -17275304 - B2_Mm1t SINE B2 -63 130 91 7 1957 1960 181 77 37 chr1 179920163 179920645 -17274787 + RLTR24 LTR ERV1 29 529 0 7 1957 1082 232 118 0 chr1 179921066 179921312 -17274120 + MTD LTR MaLR 5 279 -140 7 1957 260 116 47 0 chr1 179921304 179921347 -17274085 + ID_B1 SINE B4 146 190 -34 7 1957 225 277 46 0 chr1 179921347 179921363 -17274069 + B1_Mus2 SINE Alu 75 127 -20 7 1957 549 0 0 0 chr1 179921945 179922006 -17273426 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1957 1044 140 0 7 chr1 179922426 179922577 -17272855 + B1_Mur4 SINE Alu 1 150 0 7 1957 996 141 23 17 chr1 179922641 179922797 -17272635 + B2_Mm2 SINE B2 1 158 -37 7 1957 246 62 0 0 chr1 179922797 179922829 -17272603 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1957 996 141 23 17 chr1 179922829 179922845 -17272587 + B2_Mm2 SINE B2 159 174 -21 7 1957 761 157 104 7 chr1 179922893 179923028 -17272404 + B1_Mus1 SINE Alu 1 148 0 7 1957 343 251 383 0 chr1 179923238 179923376 -17272056 + B3 SINE B2 1 191 -25 7 1957 216 86 0 0 chr1 179923382 179923417 -17272015 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1957 1025 61 92 0 chr1 179923418 179923549 -17271883 - B1_Mm SINE Alu -4 143 1 7 1957 30 45 0 0 chr1 179923549 179923593 -17271839 + AT_rich Low_complexity Low_complexity 1 44 0 7 1957 774 226 0 14 chr1 179924217 179924365 -17271067 - B1_Mur1 SINE Alu -2 147 2 7 1957 596 307 78 14 chr1 179924365 179924583 -17270849 - B4 SINE B4 -58 234 3 7 1957 384 22 0 0 chr1 179925382 179925427 -17270005 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 1957 808 281 11 5 chr1 179925434 179925620 -17269812 - B3 SINE B2 -29 187 1 7 1957 409 321 107 55 chr1 179925635 179926017 -17269415 - L1M5 LINE L1 -1225 4921 4520 7 1957 1168 82 0 7 chr1 179926121 179926269 -17269163 + B1_Mus1 SINE Alu 2 148 0 7 1957 289 246 65 16 chr1 179926295 179926357 -17269075 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 7 1957 281 299 92 0 chr1 179926357 179926377 -17269055 + ID_B1 SINE B4 7 96 -128 7 1957 1080 231 113 45 chr1 179926381 179926717 -17268715 + MTE2b LTR MaLR 1 359 -20 7 1957 491 82 30 20 chr1 179926725 179926825 -17268607 + (TATG)n Simple_repeat Simple_repeat 2 102 0 7 1957 575 244 30 0 chr1 179926827 179926962 -17268470 - B1F SINE Alu -1 148 10 7 1957 301 348 20 82 chr1 179927059 179927189 -17268243 - B4 SINE B4 -153 139 13 7 1957 1823 90 268 7 chr1 179927189 179927480 -17267952 + ORR1B2 LTR MaLR 1 367 0 7 1957 301 348 20 82 chr1 179927480 179927496 -17267936 - B4 SINE B4 -280 12 2 7 1957 249 57 0 0 chr1 179927663 179927698 -17267734 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1957 970 135 7 0 chr1 179927701 179927842 -17267590 - B1_Mus1 SINE Alu -6 142 1 7 1957 347 247 196 0 chr1 179927918 179928015 -17267417 - PB1D10 SINE Alu -1 116 1 8 1957 325 240 144 39 chr1 179928206 179928310 -17267122 - PB1D10 SINE Alu 0 117 3 8 1957 866 194 14 0 chr1 179928373 179928512 -17266920 - B1_Mur3 SINE Alu -7 142 2 8 1957 627 245 125 48 chr1 179929855 179930135 -17265297 - RLTR12B LTR ERVK -9 519 236 8 1957 914 238 30 42 chr1 179930122 179930443 -17264989 - RLTR12B LTR ERVK -269 308 31 8 1957 5983 128 146 11 chr1 179930456 179931438 -17263994 - RLTR13D3 LTR ERVK 0 1114 1 8 1957 2313 219 6 11 chr1 179931447 179931923 -17263509 - ETnERV3-int LTR ERVK -28 5780 5307 8 1957 1786 144 21 42 chr1 179932038 179932372 -17263060 - RLTR15 LTR ERVK 0 359 33 8 1957 390 251 95 6 chr1 179932827 179932947 -17262485 + B1F SINE Alu 4 133 -16 8 1957 847 228 39 34 chr1 179934012 179934216 -17261216 - B3 SINE B2 -11 205 1 8 1957 38768 44 1 3 chr1 179934607 179941037 -17254395 - L1Md_T LINE L1 0 6585 73 8 1957 319 154 23 93 chr1 179941121 179941207 -17254225 - B3A SINE B2 -117 81 2 8 1957 837 271 24 10 chr1 179941207 179941410 -17254022 - B4A SINE B4 -65 227 22 8 1957 222 350 0 0 chr1 179941357 179941417 -17254015 - ID4_ SINE ID -10 73 14 8 1957 296 60 40 0 chr1 179941421 179941471 -17253961 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 8 1957 302 306 226 42 chr1 179941499 179941602 -17253830 - L1MD2 LINE L1 -40 6319 6200 8 1957 2474 157 56 36 chr1 179941602 179942050 -17253382 - RMER6B LTR ERVK 0 461 5 8 1957 302 306 226 42 chr1 179942050 179942158 -17253274 - L1MD2 LINE L1 -160 6199 6069 8 1957 330 287 75 42 chr1 179942310 179942430 -17253002 - ORR1E LTR MaLR -246 124 1 8 1957 1540 210 171 3 chr1 179942452 179942844 -17252588 - MT2A LTR ERVL -69 464 7 8 1957 2363 191 29 2 chr1 179943264 179943674 -17251758 + MTC LTR MaLR 1 421 0 8 1957 222 213 0 21 chr1 179943867 179943915 -17251517 + CT-rich Low_complexity Low_complexity 3 49 0 8 1957 306 0 0 0 chr1 179943924 179943958 -17251474 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1957 339 273 176 34 chr1 179944015 179944163 -17251269 - B3A SINE B2 -29 169 1 8 1957 1308 229 63 84 chr1 179944220 179944261 -17251171 - RLTR11A LTR ERVK -2 526 500 8 1957 3181 83 8 2 chr1 179944261 179944659 -17250773 + MTB LTR MaLR 1 400 0 8 1957 1308 229 63 84 chr1 179944659 179945107 -17250325 - RLTR11A LTR ERVK -29 499 47 8 1957 1375 190 73 111 chr1 179945500 179945896 -17249536 + ORR1C2 LTR MaLR 4 384 0 8 1957 537 68 0 0 chr1 179946406 179946480 -17248952 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 8 1957 1177 57 36 0 chr1 179946737 179946877 -17248555 + B1_Mm SINE Alu 2 146 -1 8 1957 1231 236 93 81 chr1 179947134 179947650 -17247782 - RLTR11A LTR ERVK -4 524 3 8 1957 800 178 229 6 chr1 179948119 179948294 -17247138 - B3 SINE B2 -2 214 1 8 1957 356 350 35 0 chr1 179948299 179948442 -17246990 - B1F2 SINE Alu -1 148 1 8 1957 186 341 96 12 chr1 179948445 179948528 -17246904 - MIRc SINE MIR -49 219 130 8 1957 25601 65 3 176 chr1 179948635 179954336 -17241096 - L1_Mus1 LINE L1 0 6567 1848 8 1957 4224 39 0 27 chr1 179954333 179954860 -17240572 + L1_Mm LINE L1 5074 5586 -297 8 1957 9600 3 0 0 chr1 179954860 179955855 -17239577 + L1Md_A LINE L1 5587 6581 -1 8 1957 11263 125 6 29 chr1 179955855 179957990 -17237442 - L1VL4 LINE L1 -2987 2899 816 8 1957 473 0 0 0 chr1 179958105 179958163 -17237269 - L1Md_A LINE L1 -1 6581 6524 8 1957 1041 9 0 0 chr1 179958163 179958270 -17237162 - U6 snRNA snRNA 0 107 1 8 1957 1064 189 18 4 chr1 179958270 179958498 -17236934 - L1VL4 LINE L1 -5661 958 728 8 1957 460 257 43 7 chr1 179958500 179958641 -17236791 - L1VL4 LINE L1 -5807 812 667 8 1957 405 284 9 12 chr1 179958679 179958848 -17236584 - L1VL1 LINE L1 -6022 400 85 8 1957 195 69 0 0 chr1 179959157 179959186 -17236246 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1957 373 293 208 51 chr1 179959667 179959922 -17235510 + MLT1A0 LTR MaLR 5 299 -66 8 1957 994 148 101 0 chr1 179960195 179960384 -17235048 + MTC LTR MaLR 3 210 -211 8 1957 1167 129 0 0 chr1 179960527 179960697 -17234735 + B2_Mm2 SINE B2 1 170 -25 8 1957 798 176 8 0 chr1 179960794 179960925 -17234507 + B1_Mur4 SINE Alu 10 141 -9 8 1957 1042 160 0 11 chr1 179960952 179961129 -17234303 - B2_Mm1t SINE B2 -7 186 12 8 1957 1085 216 20 0 chr1 179961430 179961634 -17233798 - B3 SINE B2 -4 212 5 8 244 561 113 53 18 chr1 179961835 179962006 -17233426 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1958 209 213 0 21 chr1 179962009 179962057 -17233375 + (CATA)n Simple_repeat Simple_repeat 4 50 0 8 1958 507 149 23 29 chr1 179962067 179962240 -17233192 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1958 214 209 50 7 chr1 179962321 179962461 -17232971 + (CA)n Simple_repeat Simple_repeat 2 147 0 8 1958 239 206 188 14 chr1 179962636 179962705 -17232727 - ID4 SINE ID -1 82 2 8 1958 469 233 29 10 chr1 179962709 179962813 -17232619 - PB1D10 SINE Alu -6 111 6 8 1958 22 35 0 0 chr1 179962901 179962930 -17232502 + AT_rich Low_complexity Low_complexity 1 29 0 8 1958 35031 75 5 5 chr1 179963110 179969301 -17226131 - L1Md_F2 LINE L1 0 6582 390 8 1958 840 318 39 25 chr1 179969413 179969777 -17225655 - L1MC1 LINE L1 -108 6225 5857 8 1958 207 0 0 0 chr1 179970996 179971019 -17224413 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1958 528 292 64 23 chr1 179971027 179971199 -17224233 + ID_B1 SINE B4 1 179 -45 8 1958 452 292 32 52 chr1 179971330 179971372 -17224060 + ID_B1 SINE B4 43 194 -30 8 1958 698 168 9 0 chr1 179971372 179971485 -17223947 + B1_Mus1 SINE Alu 2 115 -33 8 1958 238 225 41 92 chr1 179971409 179971507 -17223925 + RLTR25B LTR ERVK 440 532 -496 8 1958 459 125 0 0 chr1 179971955 179972027 -17223405 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1958 1105 88 7 45 chr1 179972076 179972230 -17223202 + B1_Mus1 SINE Alu 1 148 0 8 1958 368 315 73 9 chr1 179972574 179972683 -17222749 - B1F1 SINE Alu 0 117 2 8 1958 859 227 77 10 chr1 179972690 179972886 -17222546 - B3 SINE B2 -7 209 1 8 1958 222 91 0 0 chr1 179973578 179973611 -17221821 + (TTG)n Simple_repeat Simple_repeat 3 35 0 8 1958 1011 116 6 44 chr1 179973623 179973804 -17221628 + B2_Mm2 SINE B2 2 175 -20 8 1958 297 0 0 0 chr1 179973867 179973900 -17221532 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1958 809 157 15 0 chr1 179974148 179974282 -17221150 + ORR1A2 LTR MaLR 1 136 -191 8 1958 10261 154 74 15 chr1 179974282 179976135 -17219297 + ORR1A2-int LTR MaLR 1 1963 0 8 1958 2299 132 6 0 chr1 179976135 179976460 -17218972 + ORR1A2 LTR MaLR 1 327 0 8 1958 913 227 42 42 chr1 179976530 179976746 -17218686 - B3 SINE B2 0 216 1 8 1958 207 170 0 0 chr1 179976955 179977002 -17218430 + CT-rich Low_complexity Low_complexity 3 49 0 8 1958 462 286 172 11 chr1 179978160 179978520 -17216912 - L1MC3 LINE L1 -95 7690 7273 8 1958 195 42 0 0 chr1 179978521 179978545 -17216887 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1958 471 230 148 17 chr1 179978561 179978676 -17216756 - RSINE1 SINE B4 -25 140 11 8 1958 893 158 215 0 chr1 179978704 179978881 -17216551 - B3 SINE B2 0 216 2 8 1958 1876 169 12 15 chr1 179979130 179979460 -17215972 + ORR1A4 LTR MaLR 1 329 0 8 1958 2188 153 21 49 chr1 179979566 179979952 -17215480 + ORR1C1 LTR MaLR 1 375 -3 8 1958 5973 207 128 15 chr1 179979955 179981310 -17214122 + ORR1C1-int LTR MaLR 1 1509 0 8 1958 1807 176 30 54 chr1 179981310 179981682 -17213750 + ORR1C1 LTR MaLR 1 363 -15 8 1958 301 246 70 78 chr1 179981722 179981778 -17213654 - L1MC3 LINE L1 -1150 6635 6585 8 1958 1989 135 218 0 chr1 179981778 179982140 -17213292 - BGLII_B LTR ERVK 0 441 1 8 1958 301 246 70 78 chr1 179982140 179982211 -17213221 - L1MC3 LINE L1 -1201 6584 6509 8 1958 843 236 47 5 chr1 179982253 179982445 -17212987 + B3 SINE B2 9 208 -8 8 1958 29 28 0 0 chr1 179982486 179982522 -17212910 + AT_rich Low_complexity Low_complexity 1 36 0 8 1958 392 273 19 62 chr1 179982522 179982682 -17212750 - MLT1B LTR MaLR -4 386 234 8 1958 359 217 361 79 chr1 179982783 179983081 -17212351 - L1MC3 LINE L1 -361 5819 5433 8 1958 388 265 59 0 chr1 179983096 179983198 -17212234 - PB1D9 SINE Alu -1 119 12 8 1958 236 286 0 67 chr1 179983132 179983207 -17212225 - MT2B LTR ERVL -365 236 167 8 1958 5125 65 0 3 chr1 179983234 179983853 -17211579 - L1Md_F2 LINE L1 0 6582 5966 8 1958 2751 42 0 0 chr1 179983853 179984190 -17211242 + ORR1A0 LTR MaLR 2 338 -8 8 1958 31227 50 7 1 chr1 179984195 179988158 -17207274 - L1Md_F2 LINE L1 -617 5967 1979 8 1958 2323 93 66 17 chr1 179988158 179988508 -17206924 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1958 55657 29 11 2 chr1 179988518 179994903 -17200529 + IAPEz-int LTR ERVK 35 6478 -3 8 1958 2323 93 66 17 chr1 179994907 179995257 -17200175 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1958 7264 44 5 23 chr1 179995257 179996923 -17198509 - L1Md_F2 LINE L1 -3899 1984 353 8 1958 371 300 140 54 chr1 179997654 179997876 -17197556 + MLT1A0 LTR MaLR 59 299 -66 8 1958 945 153 106 0 chr1 179998149 179998338 -17197094 + MTC LTR MaLR 2 210 -211 8 1958 1100 127 24 0 chr1 179998481 179998647 -17196785 + B2_Mm2 SINE B2 1 170 -25 8 1958 427 213 0 122 chr1 179998715 179998736 -17196696 + MT2B LTR ERVL 150 155 -446 8 1958 806 200 0 0 chr1 179998736 179998871 -17196561 + B1_Mur4 SINE Alu 4 138 -12 8 1958 421 269 19 9 chr1 179999124 179999229 -17196203 - PB1D10 SINE Alu -6 111 6 8 1958 899 313 39 22 chr1 179999620 179999983 -17195449 - L1MC1 LINE L1 -108 6225 5857 8 1958 594 253 102 24 chr1 180001240 180001406 -17194026 + ID_B1 SINE B4 1 179 -45 1 1958 665 186 9 0 chr1 180001586 180001699 -17193733 + B1_Mus1 SINE Alu 2 115 -33 2 1958 471 78 0 0 chr1 180002169 180002233 -17193199 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1958 1171 88 7 0 chr1 180002435 180002582 -17192850 + B1_Mus1 SINE Alu 1 148 0 4 1958 368 315 73 9 chr1 180002926 180003035 -17192397 - B1F1 SINE Alu 0 117 2 5 1958 858 222 77 10 chr1 180003042 180003238 -17192194 - B3 SINE B2 -7 209 1 6 1958 477 0 0 0 chr1 180003587 180003640 -17191792 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1958 297 51 0 0 chr1 180003928 180003967 -17191465 + (TTG)n Simple_repeat Simple_repeat 3 41 0 8 1958 1003 99 0 14 chr1 180003979 180004123 -17191309 + B2_Mm2 SINE B2 2 143 -52 9 1958 234 0 0 0 chr1 180004224 180004250 -17191182 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1958 189 0 0 0 chr1 180004570 180004591 -17190841 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1958 837 142 15 0 chr1 180004695 180004829 -17190603 + ORR1A2 LTR MaLR 1 136 -191 1 1958 10384 148 76 16 chr1 180004829 180006679 -17188753 + ORR1A2-int LTR MaLR 1 1961 -2 1 1958 2369 123 6 0 chr1 180006681 180007006 -17188426 + ORR1A2 LTR MaLR 1 327 0 1 1958 938 222 42 42 chr1 180007075 180007291 -17188141 - B3 SINE B2 0 216 1 1 1958 215 205 0 0 chr1 180007498 180007537 -17187895 + CT-rich Low_complexity Low_complexity 3 41 0 1 1958 429 273 174 19 chr1 180008778 180009049 -17186383 - L1MD3 LINE L1 -201 7794 7273 1 1958 231 36 0 0 chr1 180009050 180009078 -17186354 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1958 480 230 148 17 chr1 180009088 180009203 -17186229 - RSINE1 SINE B4 -25 140 11 1 1958 896 174 185 0 chr1 180009225 180009403 -17186029 - B3 SINE B2 -4 212 2 1 1958 263 311 25 16 chr1 180009450 180009571 -17185861 - L1MD3 LINE L1 -897 7098 6977 1 1958 1472 181 14 21 chr1 180009652 180009940 -17185492 + ORR1A4 LTR MaLR 1 286 -43 1 1958 3176 60 0 2 chr1 180009940 180010343 -17185089 - L1_Mm LINE L1 -3329 2554 2153 2 1958 18898 7 0 0 chr1 180010340 180012426 -17183006 + L1Md_A LINE L1 3501 5586 -297 2 1958 9614 3 0 0 chr1 180012426 180013422 -17182010 + L1Md_A LINE L1 5587 6582 0 2 1958 17795 18 0 0 chr1 180013425 180015440 -17179992 + L1Md_T LINE L1 3572 5586 -297 2 1958 8548 55 0 0 chr1 180015440 180016436 -17178996 + L1Md_T LINE L1 5587 6582 0 2 1958 420 89 0 0 chr1 180016442 180016498 -17178934 + ORR1A4 LTR MaLR 274 329 0 1 1958 2183 158 21 49 chr1 180016599 180016985 -17178447 + ORR1C1 LTR MaLR 1 375 -3 2 1958 4302 252 42 25 chr1 180016988 180018166 -17177266 + ORR1C1-int LTR MaLR 1 1197 -173 2 1958 7692 51 4 9 chr1 180018171 180019122 -17176310 - L1Md_F2 LINE L1 -12 6570 5625 2 1958 26006 78 2 20 chr1 180019118 180023323 -17172109 - L1Md_F LINE L1 -1277 4606 479 2 1958 1040 164 5 11 chr1 180023323 180023514 -17171918 + ORR1C1-int LTR MaLR 1320 1509 0 2 1958 1836 171 32 54 chr1 180023514 180023885 -17171547 + ORR1C1 LTR MaLR 1 363 -15 2 1958 283 244 64 71 chr1 180023912 180023981 -17171451 - L1MD3 LINE L1 -1137 6648 6585 1 1958 2291 123 156 8 chr1 180023981 180024365 -17171067 - BGLII_B LTR ERVK 0 441 1 2 1958 283 244 64 71 chr1 180024365 180024436 -17170996 - L1MD3 LINE L1 -1201 6584 6509 1 1958 877 230 47 5 chr1 180024478 180024670 -17170762 + B3 SINE B2 9 208 -8 2 1958 27 0 0 0 chr1 180024717 180024744 -17170688 + AT_rich Low_complexity Low_complexity 1 27 0 2 1958 301 315 7 59 chr1 180024747 180024882 -17170550 - MLT1C LTR MaLR -4 463 336 2 1958 319 203 179 47 chr1 180024941 180025241 -17170191 - L1MD3 LINE L1 -280 5903 5475 1 1958 323 288 27 69 chr1 180025291 180025430 -17170002 - B1_Mus1 SINE Alu -18 131 3 3 1958 226 239 0 0 chr1 180025432 180025478 -17169954 - L1MD3 LINE L1 -740 5440 5395 1 1958 965 208 72 68 chr1 180025484 180025763 -17169669 - RLTR20B2 LTR ERVK -280 280 1 3 1958 523 236 24 0 chr1 180025766 180025889 -17169543 - L1MD3 LINE L1 -875 5271 5146 1 1958 452 355 0 7 chr1 180026156 180026298 -17169134 + RSINE1 SINE B4 2 142 -23 3 1958 21 57 0 0 chr1 180026828 180026863 -17168569 + AT_rich Low_complexity Low_complexity 1 35 0 3 1958 478 324 19 63 chr1 180027910 180028230 -17167202 - L1M4 LINE L1 -421 5757 5451 3 1958 2568 162 82 24 chr1 180030167 180030494 -17164938 - RLTR11A LTR ERVK 0 528 188 3 1958 2154 137 29 0 chr1 180030494 180030808 -17164624 - ORR1A2 LTR MaLR 0 327 5 3 1958 2568 162 82 24 chr1 180030808 180030979 -17164453 - RLTR11A LTR ERVK -341 187 1 3 1958 1250 170 19 14 chr1 180031030 180031245 -17164187 + B3 SINE B2 1 216 0 3 1958 21 36 0 0 chr1 180031245 180031273 -17164159 + AT_rich Low_complexity Low_complexity 1 28 0 3 1958 448 197 139 6 chr1 180031317 180031475 -17163957 + Lx9 LINE L1 7466 7644 0 3 1958 809 275 75 51 chr1 180031566 180031910 -17163522 + MTE2a LTR MaLR 41 388 -31 4 1958 243 269 0 0 chr1 180031923 180031990 -17163442 + L1MC LINE L1 3022 3088 -3058 4 1958 229 280 12 62 chr1 180032196 180032276 -17163156 - BC1_Mm scRNA scRNA -63 89 14 4 1958 442 291 26 93 chr1 180032467 180032660 -17162772 + B3A SINE B2 3 182 -16 4 1958 311 258 0 0 chr1 180032732 180032798 -17162634 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 4 1958 21 36 0 0 chr1 180033160 180033188 -17162244 + AT_rich Low_complexity Low_complexity 1 28 0 4 1958 496 184 133 19 chr1 180033239 180033344 -17162088 - PB1D7 SINE Alu -2 118 2 4 1958 2642 211 60 64 chr1 180034403 180035225 -17160207 - RMER19B LTR ERVK 0 902 1 4 1958 260 352 37 132 chr1 180035390 180035681 -17159751 - MLT1C LTR MaLR -74 393 125 4 1958 414 0 0 0 chr1 180035681 180035727 -17159705 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1958 260 352 37 132 chr1 180035727 180035867 -17159565 - MLT1C LTR MaLR -343 124 3 4 1958 181 161 0 0 chr1 180035917 180035948 -17159484 + MIRc SINE MIR 100 130 -138 5 1958 660 285 178 52 chr1 180036292 180036658 -17158774 + MTEa-int LTR MaLR 1167 1578 -2 5 1958 304 317 143 34 chr1 180036661 180036870 -17158562 + MTEa LTR MaLR 3 234 -145 5 1958 237 211 0 40 chr1 180036972 180037001 -17158431 + polypurine Low_complexity Low_complexity 2 29 0 5 1958 1082 73 73 0 chr1 180037001 180037138 -17158294 + B1_Mus1 SINE Alu 2 148 0 5 1958 237 211 0 40 chr1 180037138 180037182 -17158250 + polypurine Low_complexity Low_complexity 30 71 0 5 1958 1492 161 92 77 chr1 180037480 180037829 -17157603 - RLTR23 LTR ERV1 -76 354 1 5 1958 1703 174 227 8 chr1 180038017 180038382 -17157050 + RLTR41 LTR ERV1 2 446 0 5 1958 354 115 0 0 chr1 180038512 180038573 -17156859 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1958 220 359 21 52 chr1 180038818 180038915 -17156517 + B1F2 SINE Alu 1 94 -55 5 1958 330 26 0 0 chr1 180039002 180039041 -17156391 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1958 539 264 101 7 chr1 180039051 180039200 -17156232 - RSINE1 SINE B4 0 165 3 6 1958 2833 99 38 38 chr1 180039276 180039746 -17155686 - RMER16 LTR ERVK 0 533 64 6 1958 235 269 42 46 chr1 180040373 180040542 -17154890 + RMER17A LTR ERVK 257 425 -326 6 1958 333 0 0 0 chr1 180040542 180040579 -17154853 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1958 235 269 42 46 chr1 180040579 180040647 -17154785 + RMER17A LTR ERVK 426 492 -259 6 1958 385 320 30 71 chr1 180040613 180040781 -17154651 - MLT1A LTR MaLR -213 161 1 6 1958 624 302 6 30 chr1 180041050 180041217 -17154215 + RSINE1 SINE B4 3 165 0 6 1958 759 278 40 20 chr1 180042076 180042274 -17153158 + B4 SINE B4 2 203 -89 6 1958 558 276 78 24 chr1 180042290 180042457 -17152975 + B3 SINE B2 36 211 -5 6 1958 539 307 0 30 chr1 180042633 180042764 -17152668 + RSINE1 SINE B4 14 140 -25 6 1958 378 70 42 0 chr1 180042787 180042858 -17152574 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1958 359 220 0 11 chr1 180042863 180042955 -17152477 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 1958 231 36 0 0 chr1 180042972 180043000 -17152432 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1958 423 0 0 0 chr1 180043007 180043054 -17152378 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1958 1195 122 61 0 chr1 180043450 180043630 -17151802 - B2_Mm1t SINE B2 -1 192 2 7 1958 1323 255 7 24 chr1 180044256 180044553 -17150879 + B4A SINE B4 1 292 0 7 1958 345 117 0 0 chr1 180044642 180044702 -17150730 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1958 1049 292 96 3 chr1 180044837 180044969 -17150463 + MTE2b LTR MaLR 1 153 -226 7 1958 1783 191 54 110 chr1 180044969 180045415 -17150017 + MTC LTR MaLR 1 421 0 7 1958 1049 292 96 3 chr1 180045415 180045625 -17149807 + MTE2b LTR MaLR 154 374 -5 7 1958 230 171 22 156 chr1 180045558 180045648 -17149784 + RLTR19C LTR ERVK 87 164 -342 7 1958 587 330 35 28 chr1 180046462 180046752 -17148680 + B4A SINE B4 1 292 0 7 1958 219 69 0 0 chr1 180047140 180047169 -17148263 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 8 1958 3395 181 138 60 chr1 180047687 180048522 -17146910 - RMER19B LTR ERVK 0 902 3 8 1958 614 250 32 13 chr1 180049694 180049848 -17145584 + B3 SINE B2 57 213 -3 8 1958 2331 214 64 2 chr1 180049884 180050381 -17145051 - RLTR11A LTR ERVK 0 528 1 8 1958 4112 107 38 63 chr1 180051054 180051720 -17143712 - L1_Mus3 LINE L1 0 6638 5990 8 1958 1323 99 16 16 chr1 180051722 180051907 -17143525 - B2_Mm2 SINE B2 -9 186 2 8 1958 215 317 12 12 chr1 180052211 180052294 -17143138 + PB1 SINE Alu 43 125 -2 8 1958 627 81 0 0 chr1 180052303 180052389 -17143043 + (TA)n Simple_repeat Simple_repeat 1 86 0 8 1958 1192 171 9 23 chr1 180052978 180053169 -17142263 + RLTR11A2 LTR ERVK 1 191 -336 8 1958 1857 138 81 10 chr1 180053169 180053476 -17141956 + ORR1A4 LTR MaLR 1 329 0 8 1958 1192 171 9 23 chr1 180053476 180053500 -17141932 + RLTR11A2 LTR ERVK 192 213 -314 8 1958 489 149 0 0 chr1 180053478 180053565 -17141867 + ORR1A3-int LTR MaLR 3 89 -1874 9 1958 886 215 0 0 chr1 180053574 180053769 -17141663 - L1_Mur3 LINE L1 -4483 1397 1203 9 1958 19416 63 2 1 chr1 180053777 180056939 -17138493 - L1Md_F2 LINE L1 -4 6578 3414 9 1958 3291 23 54 0 chr1 180056939 180057329 -17138103 - IAPLTR2a LTR ERVK 0 411 1 9 1958 6492 52 12 18 chr1 180057334 180058163 -17137269 - IAPEz-int LTR ERVK -5 6476 5653 9 1958 2692 76 0 3 chr1 180058158 180058501 -17136931 - IAPEz-int LTR ERVK -4781 1700 1359 9 1958 3478 105 40 60 chr1 180058501 180059322 -17136110 - IAPEz-int LTR ERVK -5819 662 9 9 1958 3224 31 54 0 chr1 180059323 180059713 -17135719 - IAPLTR2a LTR ERVK 0 411 1 9 1958 16690 78 3 11 chr1 180059714 180062947 -17132485 - L1Md_F LINE L1 -2465 3418 212 9 1958 1467 219 31 6 chr1 180062971 180063325 -17132107 - L1_Mur3 LINE L1 -6507 1221 859 9 1958 408 295 79 11 chr1 180063319 180063497 -17131935 - L1_Mur3 LINE L1 -7409 319 130 9 1958 326 222 105 47 chr1 180063509 180063709 -17131723 - L1M3 LINE L1 -492 5682 5479 9 1958 272 209 129 2 chr1 180063712 180063803 -17131629 - L1MA8 LINE L1 0 6291 6189 9 1958 1759 99 0 34 chr1 180063816 180064078 -17131354 + L1Md_F2 LINE L1 6329 6581 -1 9 1958 316 166 365 14 chr1 180064097 180064247 -17131185 - MT2A LTR ERVL -246 287 86 9 1958 236 250 68 121 chr1 180064273 180064405 -17131027 - MT2A LTR ERVL -408 125 1 9 1958 927 201 0 24 chr1 180064559 180064784 -17130648 + L1VL1 LINE L1 1 383 -6039 1 1958 3346 116 54 59 chr1 180064785 180065161 -17130271 + L1Md_A LINE L1 735 1138 -5586 1 1958 1690 26 0 0 chr1 180065161 180065354 -17130078 + B2_Mm1a SINE B2 1 193 0 1 1958 3346 74 18 11 chr1 180065354 180065859 -17129573 + L1Md_A LINE L1 1139 1613 -4270 1 1958 27300 60 3 1 chr1 180065858 180069302 -17126130 + L1Md_A LINE L1 2136 5586 -297 1 1958 8013 47 11 3 chr1 180069302 180070290 -17125142 + L1Md_F3 LINE L1 5587 6582 -2 1 1958 305 224 62 45 chr1 180071128 180071217 -17124215 + RSINE1 SINE B4 83 164 -1 1 1958 1057 161 5 15 chr1 180071278 180071473 -17123959 - B2_Mm2 SINE B2 0 195 3 1 1958 653 229 14 0 chr1 180071756 180071900 -17123532 + B3A SINE B2 4 149 -49 1 1958 349 211 143 129 chr1 180073107 180073254 -17122178 - MTD LTR MaLR -8 411 263 1 1958 299 194 0 0 chr1 180073927 180073994 -17121438 + B3 SINE B2 146 212 -4 1 1958 297 0 0 0 chr1 180075515 180075548 -17119884 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1958 686 245 12 6 chr1 180075559 180075723 -17119709 - MTD LTR MaLR -254 165 1 1 1958 500 320 114 63 chr1 180075893 180076243 -17119189 - MT2A LTR ERVL -100 433 66 1 1958 363 252 20 10 chr1 180076252 180076352 -17119080 - MTE2b LTR MaLR -278 101 1 1 1958 332 274 10 21 chr1 180076921 180077018 -17118414 - RSINE1 SINE B4 -68 97 2 1 1958 215 266 58 96 chr1 180077724 180077739 -17117693 + B1F SINE Alu 33 132 -17 1 1958 342 259 22 45 chr1 180077739 180077828 -17117604 + ID_B1 SINE B4 121 207 -17 1 1958 222 226 15 46 chr1 180077833 180077898 -17117534 + GA-rich Low_complexity Low_complexity 2 64 0 1 1958 458 222 55 75 chr1 180078494 180078640 -17116792 + B1F1 SINE Alu 2 144 -5 1 1958 461 293 38 0 chr1 180078783 180078916 -17116516 + ID_B1 SINE B4 83 220 -4 1 1958 857 166 14 7 chr1 180079957 180080103 -17115329 + B1_Mus1 SINE Alu 2 148 0 1 1958 308 210 12 0 chr1 180080114 180080195 -17115237 + GA-rich Low_complexity Low_complexity 2 83 0 1 1958 440 164 24 24 chr1 180080236 180080361 -17115071 + GA-rich Low_complexity Low_complexity 6 130 0 1 1958 374 274 112 8 chr1 180080798 180080923 -17114509 + ID_B1 SINE B4 82 219 -5 1 1958 614 238 69 54 chr1 180080941 180080997 -17114435 + ID_B1 SINE B4 18 224 0 1 1958 721 151 34 61 chr1 180080997 180081145 -17114287 + B1_Mur3 SINE Alu 6 149 0 1 1958 351 0 0 0 chr1 180081145 180081184 -17114248 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1958 226 167 0 20 chr1 180081185 180081234 -17114198 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1958 1011 200 34 14 chr1 180081891 180082099 -17113333 + B3 SINE B2 5 216 0 1 1958 373 276 35 40 chr1 180082104 180082278 -17113154 + L1MB3 LINE L1 4958 5130 -1016 1 1958 254 244 0 12 chr1 180082322 180082405 -17113027 + GA-rich Low_complexity Low_complexity 1 82 0 1 1958 1159 284 111 13 chr1 180082497 180082908 -17112524 + Lx5 LINE L1 6605 7042 -8 1 1958 506 271 167 23 chr1 180082923 180083420 -17112012 + L1MB3 LINE L1 5163 5726 -445 1 1958 247 304 14 0 chr1 180083793 180083862 -17111570 + L1M4 LINE L1 5565 5634 -544 1 1958 286 307 44 66 chr1 180083872 180084008 -17111424 + RSINE1 SINE B4 14 146 -19 1 1958 1033 40 33 0 chr1 180084013 180084164 -17111268 + (CA)n Simple_repeat Simple_repeat 1 156 0 1 1958 382 268 57 40 chr1 180084171 180084346 -17111086 + L1MB3 LINE L1 5815 5992 -191 1 1958 1066 83 14 14 chr1 180084695 180084842 -17110590 + B1_Mm SINE Alu 1 147 0 1 1958 189 327 55 0 chr1 180084948 180085003 -17110429 - MER5A DNA MER1_type -63 126 69 1 1958 274 314 23 0 chr1 180085009 180085095 -17110337 + C-rich Low_complexity Low_complexity 2 89 0 1 1958 602 254 51 0 chr1 180085993 180086131 -17109301 - B1_Mur2 SINE Alu 0 149 5 1 1958 661 248 38 24 chr1 180086482 180086693 -17108739 + B3 SINE B2 1 214 -2 1 1958 742 297 74 39 chr1 180087185 180087549 -17107883 - MTEb LTR MaLR -2 377 1 1 1958 300 339 92 8 chr1 180087814 180087933 -17107499 + MER21B LTR ERV1 92 220 -643 1 1958 233 313 0 12 chr1 180088200 180088284 -17107148 + PB1 SINE Alu 11 93 -34 1 1958 2225 264 118 22 chr1 180088570 180088602 -17106830 - Lx8 LINE L1 0 7473 7445 1 1958 2943 113 31 50 chr1 180088602 180089086 -17106346 - MT2C_Mm LTR ERVL 0 475 1 1 1958 2225 264 118 22 chr1 180089086 180089810 -17105622 - Lx8 LINE L1 -29 7444 6645 1 1958 279 0 0 0 chr1 180090015 180090046 -17105386 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1958 1210 111 16 16 chr1 180090048 180090232 -17105200 - B2_Mm2 SINE B2 -10 185 2 1 1958 27 29 0 0 chr1 180090233 180090267 -17105165 + AT_rich Low_complexity Low_complexity 1 34 0 1 1958 1569 257 79 13 chr1 180090267 180090763 -17104669 + Lx8 LINE L1 6178 6653 -991 1 1958 186 103 0 0 chr1 180090876 180090905 -17104527 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 1958 253 298 57 16 chr1 180091034 180091157 -17104275 - LTR16A LTR ERVL -99 352 225 1 1958 309 243 27 0 chr1 180091402 180091476 -17103956 - ID4_ SINE ID -6 77 2 1 1958 1049 240 97 22 chr1 180091809 180092003 -17103429 + MTE2b LTR MaLR 16 205 -174 1 1958 877 18 0 18 chr1 180092003 180092116 -17103316 + (TCC)n Simple_repeat Simple_repeat 2 112 0 1 1958 1049 240 97 22 chr1 180092116 180092241 -17103191 + MTE2b LTR MaLR 206 358 -21 1 1958 246 214 274 9 chr1 180092249 180092362 -17103070 + MIRb SINE MIR 120 262 -6 1 244 2771 136 14 5 chr1 180092622 180093051 -17102381 - RLTR10C LTR ERVK -3 433 1 1 1959 20266 70 19 28 chr1 180093051 180095737 -17099695 - MMERVK10C-int LTR ERVK 0 7581 4921 1 1959 13007 62 35 0 chr1 180095734 180097880 -17097552 - MMERVK10C-int LTR ERVK -2848 4733 2513 1 1959 430 79 0 0 chr1 180097877 180097940 -17097492 - MMERVK10C-int LTR ERVK -5634 1947 1885 1 1959 419 161 123 0 chr1 180097931 180098012 -17097420 - MMERVK10C-int LTR ERVK -5109 1028 938 1 1959 1507 172 95 35 chr1 180098015 180098446 -17096986 - MMERVK10C-int LTR ERVK -4755 651 312 1 1959 505 121 0 21 chr1 180098538 180098631 -17096801 - MMERVK10C-int LTR ERVK -6629 952 862 1 1959 4795 115 7 7 chr1 180098643 180099345 -17096087 - MMERVK10C-int LTR ERVK -6658 923 222 1 1959 238 235 0 19 chr1 180099345 180099397 -17096035 - RLTR27 LTR ERVK -37 272 222 1 1959 646 90 22 0 chr1 180099397 180099486 -17095946 - MMERVK10C-int LTR ERVK -7488 93 3 1 1959 1458 195 109 53 chr1 180099486 180099898 -17095534 - RLTR10C LTR ERVK -1 435 1 1 1959 235 197 102 0 chr1 180100066 180100123 -17095309 - B1F SINE Alu -1 148 55 1 1959 452 331 0 0 chr1 180100405 180100650 -17094782 + (CA)n Simple_repeat Simple_repeat 1 245 0 1 1959 273 262 12 0 chr1 180100710 180100790 -17094642 + PB1 SINE Alu 36 116 -11 1 1959 688 210 189 124 chr1 180101149 180101693 -17093739 - RMER4B LTR ERVK -2 583 5 1 1959 258 291 0 12 chr1 180101732 180101812 -17093620 - ID4 SINE ID 0 83 5 1 1959 5215 106 4 1 chr1 180103093 180104244 -17091188 - L1_Mus3 LINE L1 -318 6320 5167 1 1959 2926 24 12 0 chr1 180104244 180104577 -17090855 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1959 56589 21 16 7 chr1 180104577 180110995 -17084437 + IAPEz-int LTR ERVK 8 6481 0 1 1959 2937 21 12 0 chr1 180110995 180111328 -17084104 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1959 654 126 0 0 chr1 180111328 180111423 -17084009 - L1_Mus3 LINE L1 -711 5172 5078 1 1959 32 0 0 0 chr1 180111530 180111562 -17083870 + AT_rich Low_complexity Low_complexity 1 32 0 1 1959 1028 71 7 41 chr1 180111562 180111709 -17083723 - B1_Mus1 SINE Alu -2 146 5 1 1959 660 294 42 81 chr1 180112351 180112686 -17082746 - ORR1E LTR MaLR -31 348 1 1 1959 820 239 28 33 chr1 180112691 180112903 -17082529 + Lx7 LINE L1 6657 6867 -829 1 1959 652 211 21 74 chr1 180112947 180113136 -17082296 - ORR1D1 LTR MaLR -194 180 2 1 1959 986 166 18 19 chr1 180113136 180113366 -17082066 - ORR1E-int LTR MaLR -52 1528 1150 1 1959 335 211 11 0 chr1 180113366 180113456 -17081976 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1959 672 102 0 0 chr1 180113496 180113594 -17081838 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 1959 707 278 42 55 chr1 180113596 180113813 -17081619 - ID_B1 SINE B4 -6 218 5 1 1959 643 246 0 7 chr1 180113846 180113989 -17081443 - B1F SINE Alu -5 144 3 1 1959 1488 278 26 75 chr1 180114085 180114334 -17081098 - Lx7 LINE L1 -829 6867 6629 1 1959 471 35 0 0 chr1 180114334 180114391 -17081041 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 1 1959 1488 278 26 75 chr1 180114391 180114595 -17080837 - Lx7 LINE L1 -1068 6628 6439 1 1959 1601 16 22 0 chr1 180114595 180114778 -17080654 - B2_Mm1a SINE B2 -6 187 1 1 1959 1488 278 26 75 chr1 180114778 180114853 -17080579 - Lx7 LINE L1 -1258 6438 6364 1 1959 976 119 67 62 chr1 180114853 180115032 -17080400 + B2_Mm2 SINE B2 2 181 -14 1 1959 289 87 398 10 chr1 180115079 180115182 -17080250 + B2_Mm2 SINE B2 47 189 -6 1 1959 1111 80 0 0 chr1 180115189 180115327 -17080105 + B1_Mus1 SINE Alu 1 138 -10 1 1959 216 0 0 0 chr1 180115327 180115351 -17080081 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1959 318 242 196 8 chr1 180115409 180115542 -17079890 - Lx8 LINE L1 -1306 6167 6010 1 1959 823 286 171 12 chr1 180115569 180115902 -17079530 + MTD LTR MaLR 20 405 -14 1 1959 245 259 68 8 chr1 180115971 180116088 -17079344 + L2 LINE L2 2375 2498 -921 1 1959 256 289 102 10 chr1 180116220 180116318 -17079114 - MLT1H2 LTR MaLR -282 207 101 1 1959 1106 127 54 16 chr1 180116454 180116638 -17078794 - B2_Mm2 SINE B2 -3 192 2 1 1959 592 276 33 0 chr1 180116726 180116878 -17078554 + B3A SINE B2 1 157 -41 1 1959 201 149 42 21 chr1 180116884 180116932 -17078500 + (TCTCTG)n Simple_repeat Simple_repeat 3 51 0 1 1959 504 165 48 19 chr1 180119430 180119535 -17075897 - B1_Mur3 SINE Alu -2 147 40 1 1959 1255 97 69 0 chr1 180119744 180119919 -17075513 - B2_Mm2 SINE B2 -8 187 1 1 1959 2883 73 47 0 chr1 180121474 180121856 -17073576 + MTB LTR MaLR 1 400 0 1 1959 1014 89 7 0 chr1 180122601 180122736 -17072696 + B1_Mm SINE Alu 2 137 -10 1 1959 323 253 33 78 chr1 180123110 180123200 -17072232 - B4 SINE B4 -18 274 189 1 1959 727 208 229 11 chr1 180123251 180123426 -17072006 + B3 SINE B2 1 213 -3 1 1959 604 264 88 39 chr1 180123476 180123681 -17071751 - B4 SINE B4 -77 215 1 1 1959 366 267 117 12 chr1 180123870 180124033 -17071399 - MLT1E2 LTR MaLR -447 180 1 1 1959 655 286 78 70 chr1 180124238 180124482 -17070950 - MTEa LTR MaLR 0 379 134 1 1959 1117 111 17 0 chr1 180124522 180124703 -17070729 + B2_Mm2 SINE B2 11 194 -1 1 1959 725 201 22 0 chr1 180125090 180125229 -17070203 - MTEa LTR MaLR -237 142 1 1 1959 602 265 186 15 chr1 180125231 180125495 -17069937 - MTEa-int LTR MaLR -2 1578 1270 1 1959 875 243 101 72 chr1 180125779 180126165 -17069267 - RMER13A LTR ERVK -463 397 1 1 1959 255 298 53 11 chr1 180126165 180126259 -17069173 - MTEa-int LTR MaLR -305 1275 1178 1 1959 1222 247 99 20 chr1 180126259 180126602 -17068830 + ORR1D2 LTR MaLR 1 370 0 1 1959 2661 282 126 82 chr1 180126608 180127406 -17068026 + ORR1D2-int LTR MaLR 3 796 -784 1 1959 2431 115 25 20 chr1 180127406 180127806 -17067626 + L1_Mus4 LINE L1 6229 6630 -6 1 1959 2661 218 124 59 chr1 180127806 180127822 -17067610 + ORR1D2-int LTR MaLR 677 684 -686 1 1959 204 67 0 0 chr1 180127822 180127852 -17067580 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 1959 2661 218 124 59 chr1 180127852 180128508 -17066924 + ORR1D2-int LTR MaLR 685 1370 0 1 1959 1576 189 62 34 chr1 180128508 180128864 -17066568 + ORR1D2 LTR MaLR 1 366 -4 1 1959 1943 303 126 89 chr1 180128864 180128875 -17066557 + ORR1D2-int LTR MaLR 1528 1540 -40 1 1959 1814 250 73 64 chr1 180128885 180129309 -17066123 - MTEa-int LTR MaLR -415 1165 729 1 1959 233 29 29 0 chr1 180129309 180129343 -17066089 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1959 1814 250 73 64 chr1 180129343 180129563 -17065869 - MTEa-int LTR MaLR -852 728 515 1 1959 273 331 34 54 chr1 180129596 180129743 -17065689 - RSINE1 SINE B4 -20 145 2 2 1959 1087 257 53 39 chr1 180129743 180130088 -17065344 - MTEa-int LTR MaLR -1051 529 180 1 1959 701 290 140 19 chr1 180130088 180130460 -17064972 - MTD LTR MaLR 0 379 1 2 1959 452 183 60 22 chr1 180130734 180130868 -17064564 - L1MB2 LINE L1 -1 6170 6032 2 1959 527 214 125 16 chr1 180130928 180131132 -17064300 - L1MB3 LINE L1 -336 5847 5644 2 1959 1974 172 61 39 chr1 180131202 180131613 -17063819 - RLTR9B2 LTR ERVK 0 420 1 2 1959 417 80 38 62 chr1 180131614 180131694 -17063738 - ETnERV2-int LTR ERVK -2 7404 7327 2 1959 14814 176 27 28 chr1 180131906 180134894 -17060538 - ETnERV2-int LTR ERVK -984 6422 2665 2 1959 1333 86 27 0 chr1 180134894 180135080 -17060352 + B2_Mm2 SINE B2 1 191 -4 2 1959 5860 270 42 28 chr1 180135080 180137712 -17057720 - ETnERV2-int LTR ERVK -3503 2664 49 2 1959 1896 170 57 106 chr1 180137747 180137864 -17057568 - RLTR9B2 LTR ERVK 0 420 316 2 1959 1183 62 0 0 chr1 180137864 180138010 -17057422 + B1_Mus2 SINE Alu 2 147 0 2 1959 1896 170 57 106 chr1 180138010 180138334 -17057098 - RLTR9B2 LTR ERVK -105 315 1 2 1959 27 49 0 0 chr1 180138430 180138471 -17056961 + AT_rich Low_complexity Low_complexity 1 41 0 2 1959 247 283 0 0 chr1 180138476 180138536 -17056896 - B1F SINE Alu -88 61 2 2 1959 23 0 0 0 chr1 180138560 180138583 -17056849 + AT_rich Low_complexity Low_complexity 1 23 0 2 1959 1447 64 5 16 chr1 180138618 180138809 -17056623 - B2_Mm1t SINE B2 -3 190 2 2 1959 802 264 100 32 chr1 180138824 180139182 -17056250 + MTE2a LTR MaLR 20 407 -12 2 1959 23 86 0 0 chr1 180139321 180139379 -17056053 + AT_rich Low_complexity Low_complexity 1 58 0 2 1959 1172 130 130 0 chr1 180139663 180139863 -17055569 - URR1A DNA MER1_type 0 226 1 2 1959 612 293 129 63 chr1 180140246 180140767 -17054665 + L2 LINE L2 1231 1785 -1634 2 1959 225 0 0 0 chr1 180140951 180140976 -17054456 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1959 254 290 224 0 chr1 180141032 180141051 -17054381 - B4 SINE B4 -77 215 86 2 1959 297 226 103 35 chr1 180141051 180141138 -17054294 - B1_Mus2 SINE Alu -54 93 1 2 1959 27828 25 1 0 chr1 180141340 180145259 -17050173 - L1Md_T LINE L1 0 6582 2660 2 1959 1139 62 7 20 chr1 180145308 180145457 -17049975 - B1_Mus2 SINE Alu 0 147 1 2 1959 3382 40 5 0 chr1 180145511 180145908 -17049524 - MTB LTR MaLR 0 400 2 2 1959 340 360 57 7 chr1 180145940 180146080 -17049352 + B1F SINE Alu 3 149 0 2 1959 798 199 0 7 chr1 180146346 180146493 -17048939 + B1_Mur4 SINE Alu 5 150 0 2 1959 1374 59 42 21 chr1 180147665 180147855 -17047577 - B2_Mm2 SINE B2 0 195 2 2 1959 207 329 118 18 chr1 180148031 180148201 -17047231 - MIR SINE MIR -46 216 30 2 1959 363 44 0 0 chr1 180148217 180148262 -17047170 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 2 1959 528 264 126 44 chr1 180149005 180149298 -17046134 + Charlie22a DNA MER1_type 122 438 -53 2 1959 727 213 15 0 chr1 180149430 180149566 -17045866 + B1_Mus1 SINE Alu 1 138 -10 2 1959 250 234 0 0 chr1 180149612 180149659 -17045773 + B1F SINE Alu 1 47 -102 2 1959 232 338 0 15 chr1 180150343 180150409 -17045023 - MamSINE1 SINE tRNA -120 170 106 2 1959 406 250 48 0 chr1 180151352 180151456 -17043976 + PB1D10 SINE Alu 1 109 -8 2 1959 295 312 31 49 chr1 180151519 180151681 -17043751 - L1MB7 LINE L1 -120 6064 5906 2 1959 1139 95 0 0 chr1 180152231 180152378 -17043054 + B1_Mm SINE Alu 1 147 0 2 1959 26531 229 25 7 chr1 180153249 180158857 -17036575 - MMERGLN-int LTR ERV1 -1787 5769 3 2 1959 1581 227 128 48 chr1 180158859 180159358 -17036074 - RLTR1 LTR ERV1 0 624 86 2 1959 288 276 13 38 chr1 180159362 180159441 -17035991 - B1F1 SINE Alu -71 78 2 2 1959 223 178 0 0 chr1 180159630 180159675 -17035757 + T-rich Low_complexity Low_complexity 1 45 0 2 1959 288 271 143 58 chr1 180159904 180160127 -17035305 - L1MC4 LINE L1 -666 7376 7135 2 1959 387 143 127 25 chr1 180160278 180160357 -17035075 + MT2B LTR ERVL 171 257 -344 2 1959 605 104 36 36 chr1 180160291 180160401 -17035031 + B1_Mur2 SINE Alu 35 144 -5 2 1959 3040 26 3 0 chr1 180160680 180161025 -17034407 - ORR1A1 LTR MaLR 0 346 1 2 1959 547 196 9 26 chr1 180161109 180161224 -17034208 - PB1D9 SINE Alu -7 113 1 2 1959 612 251 87 15 chr1 180161368 180161574 -17033858 - ID_B1 SINE B4 -3 221 1 2 1959 1788 207 39 32 chr1 180161802 180162211 -17033221 - MTD LTR MaLR 0 419 8 2 1959 258 182 0 68 chr1 180162784 180162843 -17032589 + ORR1D1 LTR MaLR 156 210 -164 2 1959 317 24 24 0 chr1 180162953 180162995 -17032437 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1959 732 191 0 0 chr1 180162996 180163122 -17032310 - B1_Mus2 SINE Alu -12 135 10 2 1959 555 234 0 0 chr1 180163281 180163388 -17032044 - PB1D10 SINE Alu -5 112 6 2 1959 1025 45 121 0 chr1 180163471 180163603 -17031829 - B1_Mus1 SINE Alu 0 148 1 2 1959 377 200 42 53 chr1 180163774 180163869 -17031563 - ORR1D1 LTR MaLR 0 374 281 2 1959 432 0 0 0 chr1 180163914 180163962 -17031470 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1959 1307 72 72 0 chr1 180163978 180164159 -17031273 - B2_Mm2 SINE B2 0 195 2 2 1959 434 306 9 0 chr1 180164301 180164409 -17031023 + PB1D10 SINE Alu 4 112 -5 2 1959 1044 153 95 181 chr1 180164441 180164669 -17030763 - MTC LTR MaLR -143 278 74 2 1959 358 229 102 20 chr1 180164669 180164767 -17030665 - PB1D9 SINE Alu -14 106 1 2 1959 1044 153 95 181 chr1 180164767 180164842 -17030590 - MTC LTR MaLR -348 73 1 2 1959 946 96 70 0 chr1 180164875 180165032 -17030400 + MTC-int LTR MaLR 501 668 -590 2 1959 444 49 0 16 chr1 180165019 180165081 -17030351 - B1_Mus2 SINE Alu -12 135 75 2 1959 5814 155 60 15 chr1 180165082 180166249 -17029183 - MTC-int LTR MaLR -34 1224 5 2 1959 2001 187 18 87 chr1 180166253 180166703 -17028729 - MTC LTR MaLR 0 421 3 2 1959 694 296 27 32 chr1 180166704 180166924 -17028508 + B4A SINE B4 12 230 -62 2 1959 303 28 0 0 chr1 180167544 180167580 -17027852 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1959 192 40 0 0 chr1 180167580 180167605 -17027827 + (GGTTG)n Simple_repeat Simple_repeat 1 25 0 2 1959 440 264 72 0 chr1 180167605 180167730 -17027702 - B1_Mur1 SINE Alu -11 138 5 2 1959 822 147 29 0 chr1 180168360 180168496 -17026936 + B1_Mur4 SINE Alu 11 150 0 2 1959 282 284 0 13 chr1 180168979 180169054 -17026378 - ID2 SINE ID -9 74 1 2 1959 1403 227 66 3 chr1 180169770 180170088 -17025344 + Lx6 LINE L1 7122 7459 -1 2 1959 25 31 0 0 chr1 180170090 180170122 -17025310 + AT_rich Low_complexity Low_complexity 1 32 0 2 1959 505 212 61 9 chr1 180170231 180170345 -17025087 + PB1D9 SINE Alu 1 120 0 2 1959 426 340 35 0 chr1 180170554 180170695 -17024737 + B1F SINE Alu 4 149 0 2 1959 1211 48 0 0 chr1 180170697 180170844 -17024588 + B1_Mus2 SINE Alu 1 147 0 2 1959 219 186 0 0 chr1 180170844 180170887 -17024545 + A-rich Low_complexity Low_complexity 1 43 0 2 1959 1019 66 0 0 chr1 180171009 180171145 -17024287 + B1_Mus1 SINE Alu 13 148 0 2 1959 354 310 80 28 chr1 180171158 180171334 -17024098 + B3 SINE B2 27 211 -5 2 1959 496 312 22 0 chr1 180171436 180171574 -17023858 - B1F2 SINE Alu -8 141 1 2 1959 392 256 63 42 chr1 180171884 180172027 -17023405 - B1F SINE Alu -1 148 3 2 1959 876 109 24 0 chr1 180172312 180172474 -17022958 + B2_Mm2 SINE B2 1 179 -37 2 1959 30 27 0 0 chr1 180172540 180172577 -17022855 + AT_rich Low_complexity Low_complexity 1 37 0 2 1959 553 28 0 0 chr1 180172903 180172975 -17022457 + B1_Mus2 SINE Alu 76 147 0 2 1959 25 0 0 0 chr1 180172975 180173000 -17022432 + AT_rich Low_complexity Low_complexity 1 25 0 2 1959 1225 44 0 0 chr1 180173014 180173173 -17022259 + B2_Mm1a SINE B2 2 160 -33 2 1959 414 0 0 0 chr1 180173173 180173219 -17022213 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 1959 1141 113 56 6 chr1 180173227 180173405 -17022027 + B2_Mm2 SINE B2 2 188 -7 2 1959 973 149 14 0 chr1 180174678 180174826 -17020606 - B1_Mur4 SINE Alu 0 150 1 2 1959 838 140 36 7 chr1 180175380 180175517 -17019915 - B1_Mus2 SINE Alu -6 141 1 2 1959 1564 240 31 3 chr1 180175543 180175903 -17019529 - ORR1D2 LTR MaLR 0 370 1 2 1959 502 141 192 48 chr1 180175996 180176100 -17019332 - PB1D9 SINE Alu 0 120 2 2 1959 594 153 0 0 chr1 180176243 180176341 -17019091 + B1_Mur1 SINE Alu 38 135 -14 2 1959 936 294 20 39 chr1 180176370 180176675 -17018757 - MTE2b LTR MaLR -63 316 18 2 1959 2158 247 87 55 chr1 180176717 180176952 -17018480 - MTE-int LTR MaLR -57 1523 1283 2 1959 1074 99 7 0 chr1 180176952 180177093 -17018339 + B1_Mus2 SINE Alu 1 142 -5 2 1959 2158 247 87 55 chr1 180177093 180177569 -17017863 - MTE-int LTR MaLR -298 1282 789 2 1959 602 256 19 37 chr1 180177573 180177735 -17017697 - MTE2b LTR MaLR -151 228 70 2 1959 365 260 113 10 chr1 180177966 180178063 -17017369 + B3 SINE B2 17 123 -93 2 1959 369 0 0 0 chr1 180178364 180178405 -17017027 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1959 423 0 0 0 chr1 180178511 180178558 -17016874 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1959 222 91 0 0 chr1 180179273 180179306 -17016126 + (CCCCCT)n Simple_repeat Simple_repeat 4 36 0 2 1959 486 0 0 0 chr1 180182175 180182229 -17013203 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1959 1336 64 52 0 chr1 180183245 180183417 -17012015 + B2_Mm2 SINE B2 1 181 -14 2 1959 1204 74 0 0 chr1 180183428 180183576 -17011856 - B1_Mus1 SINE Alu 0 148 1 2 1959 294 50 0 0 chr1 180183744 180183784 -17011648 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1959 528 190 288 0 chr1 180184429 180184592 -17010840 + B3 SINE B2 1 210 -6 2 1959 803 154 66 7 chr1 180185856 180185993 -17009439 - B1_Mm SINE Alu -1 146 2 2 1959 260 236 53 40 chr1 180186843 180186918 -17008514 - L1ME3B LINE L1 -38 6202 6127 3 1959 242 311 181 19 chr1 180186960 180187330 -17008102 - L1ME3B LINE L1 -178 6062 5633 3 1959 1147 72 0 0 chr1 180187496 180187635 -17007797 + B1_Mus1 SINE Alu 1 139 -9 3 1959 310 21 43 0 chr1 180187635 180187682 -17007750 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1959 4257 57 66 2 chr1 180187729 180188274 -17007158 + MT2B2 LTR ERVL 1 580 -4 3 1959 1394 79 21 5 chr1 180188472 180188662 -17006770 + B2_Mm2 SINE B2 3 195 0 3 1959 742 201 52 26 chr1 180188688 180188841 -17006591 + RSINE1 SINE B4 3 159 -6 3 1959 504 254 35 7 chr1 180189360 180189503 -17005929 + MTEa LTR MaLR 1 147 -232 3 1959 634 200 169 41 chr1 180189542 180189579 -17005853 + RMER4B LTR ERVK 1 41 -544 3 1959 1399 81 11 0 chr1 180189579 180189764 -17005668 + B2_Mm1t SINE B2 2 188 -5 3 1959 634 240 125 81 chr1 180189764 180190185 -17005247 + RMER4B LTR ERVK 41 450 -16 3 1959 415 205 23 50 chr1 180190250 180190407 -17005025 - RLTR20B3 LTR ERVK -478 99 21 3 1959 329 316 86 0 chr1 180190979 180191096 -17004336 - RSINE1 SINE B4 -30 135 9 3 1959 216 0 0 0 chr1 180191246 180191270 -17004162 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 3 1959 447 219 41 16 chr1 180191627 180191748 -17003684 + MERVL_2A-int LTR ERVL 186 309 -5452 3 1959 28320 102 11 14 chr1 180191785 180196298 -16999134 + L1VL4 LINE L1 899 5391 -492 3 1959 215 31 0 30 chr1 180197299 180197332 -16998100 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1959 26 0 0 0 chr1 180197594 180197620 -16997812 + AT_rich Low_complexity Low_complexity 1 26 0 3 1959 273 215 62 0 chr1 180197781 180197846 -16997586 - L1MD3 LINE L1 -2071 5924 5856 3 1959 8066 43 23 2 chr1 180197857 180199027 -16996405 + L1_Mus1 LINE L1 5377 6567 0 3 1959 1986 154 11 22 chr1 180199048 180199406 -16996026 - ORR1B2 LTR MaLR -8 359 6 3 1959 200 114 68 0 chr1 180199406 180199450 -16995982 + CT-rich Low_complexity Low_complexity 2 48 0 3 1959 1189 68 0 0 chr1 180199465 180199612 -16995820 - B1_Mus2 SINE Alu 0 147 1 3 1959 433 289 45 50 chr1 180199667 180199709 -16995723 - RMER30 DNA MER1_type -2 200 164 3 1959 2122 177 23 29 chr1 180199709 180200151 -16995281 + RMER10A LTR ERVL 4 442 0 3 1959 433 289 45 50 chr1 180200151 180200308 -16995124 - RMER30 DNA MER1_type -39 163 2 3 1959 255 239 196 0 chr1 180200310 180200402 -16995030 + MERVL_2A-int LTR ERVL 394 503 -5211 3 1959 302 149 14 43 chr1 180200449 180200519 -16994913 + RLTR28 LTR ERVL 436 503 -21 3 1959 1899 242 141 30 chr1 180200555 180201159 -16994273 + MERVL_2A-int LTR ERVL 2185 2843 -2918 3 1959 1184 68 0 0 chr1 180201193 180201340 -16994092 - B1_Mus2 SINE Alu 0 147 1 3 1959 255 61 0 0 chr1 180201348 180201381 -16994051 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1959 266 50 0 0 chr1 180201793 180201806 -16993626 + RLTR9B LTR ERVK 1 13 -424 3 1959 760 156 13 26 chr1 180201806 180201957 -16993475 + B1_Mur4 SINE Alu 1 149 -1 3 1959 933 113 49 7 chr1 180202218 180202361 -16993071 - B1_Mur3 SINE Alu 0 149 1 3 1959 717 99 89 24 chr1 180202427 180202551 -16992881 + RLTR23 LTR ERV1 1 132 -298 3 1959 295 175 16 16 chr1 180202548 180202612 -16992820 + RLTR23 LTR ERV1 253 316 -114 3 1959 201 143 0 0 chr1 180202632 180202667 -16992765 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 3 1959 1264 20 7 0 chr1 180202667 180202813 -16992619 - B1_Mm SINE Alu 0 147 1 3 1959 4310 97 76 5 chr1 180202814 180203486 -16991946 - RMER19A LTR ERVK -17 720 1 3 1959 441 144 13 248 chr1 180203488 180203611 -16991821 + RLTR23 LTR ERV1 311 401 -29 3 1959 3673 106 22 57 chr1 180203611 180203919 -16991513 + LTRIS2 LTR ERV1 3 286 -278 3 1959 1229 41 0 0 chr1 180203919 180204064 -16991368 - B1_Mm SINE Alu 0 147 3 3 1959 3673 106 22 57 chr1 180204064 180204337 -16991095 + LTRIS2 LTR ERV1 287 564 0 3 1959 441 144 13 248 chr1 180204337 180204370 -16991062 + RLTR23 LTR ERV1 402 430 0 3 1959 1149 187 18 9 chr1 180204932 180205153 -16990279 + URR1A DNA MER1_type 1 223 -3 3 1959 929 49 0 8 chr1 180205255 180205379 -16990053 + (GGA)n Simple_repeat Simple_repeat 2 124 0 3 1959 21 36 0 0 chr1 180206462 180206490 -16988942 + GC_rich Low_complexity Low_complexity 1 28 0 3 1959 228 250 0 0 chr1 180206918 180206966 -16988466 + PB1D10 SINE Alu 60 107 -10 3 1959 198 0 0 0 chr1 180208321 180208343 -16987089 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 3 1959 215 284 15 7 chr1 180208785 180208871 -16986561 - B1_Mus2 SINE Alu -34 86 2 3 1959 631 231 0 37 chr1 180209137 180209272 -16986160 + B3 SINE B2 1 130 -86 3 1959 1352 69 17 0 chr1 180209322 180209495 -16985937 + B2_Mm1a SINE B2 2 177 -16 3 1959 240 35 0 0 chr1 180209496 180209525 -16985907 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 3 1959 295 119 0 0 chr1 180209611 180209653 -16985779 + B2_Mm2 SINE B2 1 42 -153 3 1959 850 36 0 18 chr1 180209650 180209764 -16985668 + B1_Mm SINE Alu 36 147 0 3 1959 1136 77 0 35 chr1 180209794 180209968 -16985464 + B2_Mm2 SINE B2 27 194 -1 3 1959 542 160 0 11 chr1 180209972 180210067 -16985365 + ORR1D1 LTR MaLR 17 110 -264 3 1959 1565 168 80 93 chr1 180210068 180210176 -16985256 + ORR1C1 LTR MaLR 1 122 -256 3 1959 3335 43 5 2 chr1 180210176 180210571 -16984861 - MTA_Mm LTR MaLR 0 396 1 3 1959 1565 168 80 93 chr1 180210571 180210837 -16984595 + ORR1C1 LTR MaLR 123 370 -8 3 1959 862 218 59 10 chr1 180210835 180211039 -16984393 + ORR1D1 LTR MaLR 109 322 -52 3 1959 336 19 0 70 chr1 180211115 180211172 -16984260 + RMER4A LTR ERVK 1 53 -413 3 1959 256 170 0 0 chr1 180211190 180211237 -16984195 + ORR1D1 LTR MaLR 322 368 -2 3 1959 3088 129 57 29 chr1 180211493 180211815 -16983617 - RMER4B LTR ERVK -8 577 244 3 1959 3787 169 26 23 chr1 180211815 180212505 -16982927 - RLTR17 LTR ERVK 0 692 1 3 1959 3088 129 57 29 chr1 180212505 180212740 -16982692 - RMER4B LTR ERVK -342 243 4 3 1959 1099 95 7 0 chr1 180212757 180212904 -16982528 - B1_Mus1 SINE Alu 0 148 1 3 1959 1037 133 6 18 chr1 180213153 180213299 -16982133 + B2_Mm2 SINE B2 1 145 -50 3 1959 318 26 0 0 chr1 180213299 180213338 -16982094 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1959 1037 133 6 18 chr1 180213338 180213359 -16982073 + B2_Mm2 SINE B2 146 166 -29 3 1959 268 79 0 0 chr1 180213372 180213410 -16982022 - MTB_Mm LTR MaLR 0 407 370 3 1959 2352 113 16 8 chr1 180213411 180213776 -16981656 - RLTR9A LTR ERVK 0 368 1 3 1959 367 139 53 40 chr1 180213776 180213851 -16981581 - RMER16-int LTR ERVK 0 7406 7331 3 1959 279 336 17 0 chr1 180214060 180214176 -16981256 - RMER16-int LTR ERVK -979 6427 6310 3 1959 3185 145 56 34 chr1 180214304 180214931 -16980501 - RMER16-int LTR ERVK -1230 4176 3656 3 1959 1525 53 0 16 chr1 180214934 180215125 -16980307 + B2_Mm1t SINE B2 1 188 -5 3 1959 3143 104 21 46 chr1 180215211 180215308 -16980124 - RMER16-int LTR ERVK -1743 3663 3563 3 1959 1249 28 0 0 chr1 180215308 180215452 -16979980 + B1_Mm SINE Alu 4 147 0 3 1959 3143 104 21 46 chr1 180215452 180215877 -16979555 - RMER16-int LTR ERVK -1844 3562 3154 3 1959 2055 164 137 2 chr1 180215877 180216324 -16979108 - LTRIS4 LTR ERV1 0 507 1 3 1959 3189 150 47 30 chr1 180216324 180216922 -16978510 - RMER16-int LTR ERVK -2249 3157 2550 3 1959 2342 147 74 85 chr1 180216916 180217457 -16977975 - RMER16-int LTR ERVK -5819 1587 1053 3 1959 236 154 0 19 chr1 180217490 180217543 -16977889 + T-rich Low_complexity Low_complexity 4 55 0 3 1959 2182 109 48 11 chr1 180217861 180218212 -16977220 - RLTR9A LTR ERVK 0 368 5 3 1959 2699 51 5 3 chr1 180218230 180218601 -16976831 - MTB LTR MaLR -28 372 1 3 1959 25 31 0 0 chr1 180218607 180218639 -16976793 + AT_rich Low_complexity Low_complexity 1 32 0 3 1959 741 163 10 0 chr1 180218988 180219124 -16976308 - B1_Mur2 SINE Alu 0 149 6 3 1959 21 36 0 0 chr1 180219268 180219296 -16976136 + AT_rich Low_complexity Low_complexity 1 28 0 3 1959 3397 38 5 0 chr1 180219688 180220082 -16975350 - MTA_Mm LTR MaLR 0 396 1 3 1959 183 42 0 0 chr1 180220101 180220125 -16975307 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1959 636 64 333 18 chr1 180220248 180220359 -16975073 - B1_Mus1 SINE Alu -2 146 1 3 1959 377 265 83 44 chr1 180220467 180220672 -16974760 + MER2 DNA MER2_type 1 213 -132 3 1959 1559 57 0 0 chr1 180220684 180220876 -16974556 + B2_Mm1t SINE B2 1 192 -1 3 1959 668 238 24 0 chr1 180220939 180221107 -16974325 + B3A SINE B2 1 172 -26 3 1959 467 240 69 15 chr1 180221148 180221279 -16974153 + MER2 DNA MER2_type 208 345 0 3 1959 637 244 6 18 chr1 180221662 180221825 -16973607 - ID_B1 SINE B4 -56 168 8 3 1959 321 188 0 30 chr1 180222215 180222281 -16973151 - MTEa LTR MaLR -23 356 293 3 1959 26 0 0 0 chr1 180222291 180222317 -16973115 + AT_rich Low_complexity Low_complexity 1 26 0 3 1959 198 0 0 0 chr1 180222508 180222530 -16972902 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1959 1430 57 17 0 chr1 180222530 180222705 -16972727 - B2_Mm2 SINE B2 -14 181 4 3 1959 272 290 0 20 chr1 180223239 180223341 -16972091 + MIR SINE MIR 67 166 -96 3 1959 2307 160 38 0 chr1 180223418 180223812 -16971620 + MTC LTR MaLR 5 413 -8 3 244 391 200 27 0 chr1 180223953 180224028 -16971404 + ID4 SINE ID 4 80 -3 3 1960 758 227 39 0 chr1 180224096 180224250 -16971182 - B3A SINE B2 -37 161 2 3 1960 327 198 235 20 chr1 180224538 180224636 -16970796 - PB1 SINE Alu -3 124 6 3 1960 2488 192 101 139 chr1 180224920 180225900 -16969532 - RMER17B LTR ERVK -15 943 1 3 1960 502 229 157 20 chr1 180225904 180226051 -16969381 - B3A SINE B2 -30 168 2 3 1960 1574 221 17 98 chr1 180226074 180226417 -16969015 - RLTR20A LTR ERVK 0 541 230 3 1960 1195 48 0 39 chr1 180226417 180226570 -16968862 - B1_Mm SINE Alu 0 147 1 3 1960 1574 221 17 98 chr1 180226570 180226651 -16968781 - RLTR20A LTR ERVK -312 229 158 3 1960 2531 53 71 6 chr1 180226651 180226976 -16968456 - ORR1A1 LTR MaLR 0 346 1 3 1960 1574 246 39 90 chr1 180226976 180227155 -16968277 - RLTR20A LTR ERVK -328 200 9 3 1960 686 234 0 25 chr1 180227173 180227331 -16968101 - B3A SINE B2 -16 182 29 3 1960 408 20 0 0 chr1 180227331 180227380 -16968052 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 3 1960 894 53 46 0 chr1 180227395 180227526 -16967906 - B1_Mus1 SINE Alu -5 143 7 3 1960 275 0 0 28 chr1 180227640 180227676 -16967756 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1960 556 247 35 17 chr1 180227762 180227935 -16967497 + B4 SINE B4 54 229 -63 3 1960 268 323 52 0 chr1 180227974 180228070 -16967362 - Charlie4a DNA MER1_type -326 182 82 3 1960 184 189 0 0 chr1 180228626 180228663 -16966769 - MIRc SINE MIR -26 242 206 3 1960 2045 129 29 9 chr1 180228710 180229054 -16966378 - RLTR17 LTR ERVK -69 623 273 3 1960 1206 49 7 0 chr1 180229162 180229306 -16966126 - B1_Mus2 SINE Alu -1 146 2 3 1960 612 164 15 7 chr1 180230511 180230646 -16964786 + GA-rich Low_complexity Low_complexity 3 138 0 3 1960 917 239 116 40 chr1 180230647 180230884 -16964548 - MTEa LTR MaLR -55 324 67 3 1960 4788 131 21 107 chr1 180230884 180231043 -16964389 - RLTR13D6 LTR ERVK 0 902 750 4 1960 279 0 0 0 chr1 180231043 180231074 -16964358 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1960 1142 83 0 0 chr1 180231074 180231219 -16964213 - B1_Mm SINE Alu -2 145 1 4 1960 4788 131 21 107 chr1 180231219 180232045 -16963387 - RLTR13D6 LTR ERVK -153 749 2 4 1960 917 239 116 40 chr1 180232045 180232108 -16963324 - MTEa LTR MaLR -313 66 1 3 1960 378 61 0 0 chr1 180232410 180232459 -16962973 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1960 306 0 0 0 chr1 180233205 180233239 -16962193 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1960 633 244 0 0 chr1 180233241 180233372 -16962060 - B1_Mur1 SINE Alu -12 137 7 4 1960 248 269 0 131 chr1 180233253 180233390 -16962042 - MT2B LTR ERVL -330 271 153 4 1960 406 209 0 44 chr1 180233867 180233957 -16961475 + PB1D9 SINE Alu 35 120 0 4 1960 347 269 48 0 chr1 180234051 180234155 -16961277 + PB1D9 SINE Alu 5 113 -7 4 1960 885 89 0 0 chr1 180234158 180234282 -16961150 + (GGA)n Simple_repeat Simple_repeat 3 126 0 4 1960 231 245 0 0 chr1 180234311 180234405 -16961027 + GA-rich Low_complexity Low_complexity 2 95 0 4 1960 316 250 0 0 chr1 180234432 180234496 -16960936 + Lx8 LINE L1 6654 6717 -756 4 1960 476 306 70 0 chr1 180234497 180234654 -16960778 + B3A SINE B2 1 168 -30 4 1960 1187 247 118 42 chr1 180234718 180235099 -16960333 + Lx8 LINE L1 6738 7147 -326 4 1960 1125 83 7 0 chr1 180235146 180235290 -16960142 - B1_Mus2 SINE Alu -2 145 1 4 1960 850 140 27 27 chr1 180235321 180235468 -16959964 + B1_Mus1 SINE Alu 2 148 0 4 1960 4970 34 5 5 chr1 180235512 180236099 -16959333 - LTRIS_Mus LTR ERV1 0 587 1 4 1960 714 78 0 0 chr1 180236270 180236373 -16959059 + B1_Mus1 SINE Alu 5 107 -41 4 1960 414 269 0 41 chr1 180236498 180236595 -16958837 - RSINE1 SINE B4 -68 97 5 4 1960 476 231 71 46 chr1 180236619 180236791 -16958641 - ORR1D2 LTR MaLR -4 375 202 4 1960 2690 101 38 35 chr1 180236791 180237280 -16958152 + RMER16 LTR ERVK 1 533 0 4 1960 446 229 56 30 chr1 180237280 180237440 -16957992 - ORR1D2 LTR MaLR -200 170 5 4 1960 930 82 104 0 chr1 180237480 180237614 -16957818 + B1_Mus1 SINE Alu 1 148 0 4 1960 276 53 0 0 chr1 180237645 180237683 -16957749 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1960 279 0 0 0 chr1 180237683 180237713 -16957719 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1960 905 216 172 0 chr1 180238036 180238304 -16957128 - ORR1D2 LTR MaLR -3 367 54 4 1960 2115 159 87 139 chr1 180238594 180238855 -16956577 - RMER16 LTR ERVK 0 533 258 4 1960 1692 31 0 0 chr1 180238855 180239047 -16956385 + B2_Mm1a SINE B2 2 193 0 4 1960 2115 159 87 139 chr1 180239047 180239347 -16956085 - RMER16 LTR ERVK -276 257 1 4 1960 262 205 106 24 chr1 180239942 180240027 -16955405 + L1ME3B LINE L1 6068 6159 -81 4 1960 461 222 86 0 chr1 180240128 180240245 -16955187 + RSINE1 SINE B4 2 128 -37 4 1960 736 247 28 11 chr1 180240478 180240654 -16954778 - ID_B1 SINE B4 -43 181 3 4 1960 903 119 0 0 chr1 180240793 180240927 -16954505 - B1_Mus2 SINE Alu 0 147 14 4 1960 585 128 78 0 chr1 180241206 180241308 -16954124 - B2_Mm2 SINE B2 -84 111 2 4 1960 938 202 61 0 chr1 180241338 180241536 -16953896 + RLTR18B LTR ERVK 297 506 -6 4 1960 1458 48 37 26 chr1 180241773 180241964 -16953468 - B2_Mm2 SINE B2 -1 194 2 4 1960 532 248 26 0 chr1 180242206 180242319 -16953113 - PB1D7 SINE Alu -1 119 4 4 1960 1490 34 29 0 chr1 180243074 180243249 -16952183 - B2_Mm2 SINE B2 -15 180 1 4 1960 404 260 39 23 chr1 180243250 180243380 -16952052 - B1F SINE Alu 0 149 18 4 1960 299 167 74 0 chr1 180243511 180243565 -16951867 - B3A SINE B2 -140 58 1 4 1960 879 306 10 7 chr1 180243582 180243875 -16951557 + L1M2 LINE L1 4874 5167 -976 4 1960 260 113 234 31 chr1 180243881 180243945 -16951487 + MT2B LTR ERVL 180 256 -345 4 1960 489 176 0 0 chr1 180243900 180243991 -16951441 + B1_Mus2 SINE Alu 57 147 0 4 1960 231 36 0 0 chr1 180243991 180244019 -16951413 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1960 291 309 6 29 chr1 180244202 180244350 -16951082 + L1_Mur3 LINE L1 1608 1745 -4141 4 1960 406 213 128 0 chr1 180244521 180244615 -16950817 + RSINE1 SINE B4 3 108 -57 4 1960 303 200 14 58 chr1 180244865 180244934 -16950498 - ID4 SINE ID -2 81 16 4 1960 1509 33 60 0 chr1 180245821 180246003 -16949429 + B2_Mm1a SINE B2 1 193 0 4 1960 1180 68 0 0 chr1 180246019 180246166 -16949266 + B1_Mus1 SINE Alu 2 148 0 4 1960 213 65 0 0 chr1 180246166 180246197 -16949235 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1960 216 309 15 0 chr1 180246322 180246390 -16949042 + RSINE1 SINE B4 88 156 -9 4 1960 325 269 86 9 chr1 180247083 180247188 -16948244 - PB1D7 SINE Alu -4 116 4 4 1960 692 211 99 40 chr1 180247377 180247579 -16947853 + RMER5 LTR ERV1 73 286 -248 4 1960 305 259 73 57 chr1 180247621 180247744 -16947688 + RMER5 LTR ERV1 382 506 -28 4 1960 300 183 99 0 chr1 180249588 180249659 -16945773 + PB1D10 SINE Alu 1 78 -39 4 1960 273 158 79 82 chr1 180250108 180250206 -16945226 + B1_Mur2 SINE Alu 6 143 -6 4 1960 274 256 0 176 chr1 180251509 180251619 -16943813 - B1F SINE Alu -20 100 10 4 1960 183 80 0 0 chr1 180259318 180259343 -16936089 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1960 722 195 0 0 chr1 180262512 180262640 -16932792 - B2_Mm2 SINE B2 -66 129 2 4 1960 886 95 80 7 chr1 180263318 180263456 -16931976 + B1_Mus1 SINE Alu 1 148 0 4 1960 24 0 0 0 chr1 180263778 180263802 -16931630 + AT_rich Low_complexity Low_complexity 1 24 0 4 1960 22 35 0 0 chr1 180263890 180263919 -16931513 + AT_rich Low_complexity Low_complexity 1 29 0 4 1960 27 62 0 0 chr1 180266833 180266881 -16928551 + GC_rich Low_complexity Low_complexity 1 48 0 4 1960 246 85 33 17 chr1 180268268 180268328 -16927104 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 4 1960 495 268 32 0 chr1 180268896 180269019 -16926413 + B1F SINE Alu 22 148 -1 4 1960 268 333 30 10 chr1 180269126 180269205 -16926227 + PB1D9 SINE Alu 1 81 -39 4 1960 346 288 7 86 chr1 180269205 180269357 -16926075 + B1_Mur4 SINE Alu 1 140 -10 4 1960 299 219 41 0 chr1 180269385 180269458 -16925974 + ID_B1 SINE B4 145 220 -4 4 1960 892 182 28 22 chr1 180269746 180269926 -16925506 + B2_Mm2 SINE B2 1 181 -14 4 1960 918 42 0 0 chr1 180269931 180270051 -16925381 - B1_Mm SINE Alu 0 147 28 4 1960 451 234 99 0 chr1 180270173 180270284 -16925148 + ID_B1 SINE B4 93 214 -10 4 1960 323 263 61 9 chr1 180270304 180270419 -16925013 - MER3 DNA MER1_type -6 203 83 4 1960 226 118 0 0 chr1 180270508 180270542 -16924890 - U2 snRNA snRNA -154 34 1 4 1960 4193 139 63 83 chr1 180270667 180271587 -16923845 + RMER19B LTR ERVK 1 902 0 4 1960 182 324 140 47 chr1 180272176 180272283 -16923149 - MIRb SINE MIR -21 247 131 4 1960 822 239 4 51 chr1 180272418 180272652 -16922780 + ID_B1 SINE B4 2 224 0 4 1960 426 147 0 0 chr1 180272654 180272693 -16922739 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1960 1110 36 72 0 chr1 180272693 180272831 -16922601 + B1_Mus1 SINE Alu 1 148 0 4 1960 426 147 0 0 chr1 180272831 180272866 -16922566 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1960 258 370 104 5 chr1 180272893 180273105 -16922327 + MLT2B3 LTR ERVL 154 386 -168 4 1960 29 0 0 0 chr1 180273112 180273141 -16922291 + AT_rich Low_complexity Low_complexity 1 29 0 4 1960 666 285 0 35 chr1 180273153 180273324 -16922108 - RSINE1 SINE B4 0 165 1 4 1960 2502 81 16 0 chr1 180273500 180273822 -16921610 + ORR1A2 LTR MaLR 1 327 0 4 1960 279 54 0 0 chr1 180274215 180274252 -16921180 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1960 256 323 148 20 chr1 180274252 180274345 -16921087 - PB1D7 SINE Alu -13 107 1 4 1960 212 315 37 0 chr1 180274301 180274355 -16921077 - ID_B1 SINE B4 -99 125 70 4 1960 630 173 0 9 chr1 180274396 180274507 -16920925 - B1_Mur3 SINE Alu -34 115 6 4 1960 3324 36 60 12 chr1 180274507 180274923 -16920509 + RLTR10C LTR ERVK 1 436 0 4 1960 1045 177 124 54 chr1 180274930 180275228 -16920204 + MTD LTR MaLR 101 419 0 4 1960 414 0 0 0 chr1 180275647 180275693 -16919739 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4 1960 363 269 32 57 chr1 180275713 180275871 -16919561 + RSINE1 SINE B4 3 156 -9 4 1960 580 224 80 0 chr1 180276368 180276493 -16918939 - B1_Mus2 SINE Alu -12 135 1 4 1960 260 143 0 0 chr1 180276643 180276685 -16918747 + RSINE1 SINE B4 2 43 -122 4 1960 587 205 9 0 chr1 180276753 180276865 -16918567 + PB1D9 SINE Alu 2 114 -6 4 1960 186 133 0 0 chr1 180276866 180276896 -16918536 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1960 679 218 132 0 chr1 180276957 180277131 -16918301 + B3 SINE B2 20 216 0 4 1960 560 181 38 9 chr1 180277140 180277246 -16918186 + B1F2 SINE Alu 3 111 -38 4 1960 351 0 0 0 chr1 180277246 180277285 -16918147 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1960 622 216 128 14 chr1 180277300 180277441 -16917991 - B3A SINE B2 -39 159 3 4 1960 525 16 0 0 chr1 180278050 180278112 -16917320 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1960 195 164 0 47 chr1 180278158 180278222 -16917210 + C-rich Low_complexity Low_complexity 5 65 0 4 1960 213 39 0 0 chr1 180278242 180278268 -16917164 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 4 1960 497 185 0 0 chr1 180278268 180278349 -16917083 - B1_Mus2 SINE Alu -62 85 5 4 1960 568 291 0 0 chr1 180278491 180278625 -16916807 - ID_B1 SINE B4 -5 219 86 4 1960 476 240 75 110 chr1 180278680 180278784 -16916648 - B3A SINE B2 -16 182 77 4 1960 438 20 0 0 chr1 180278784 180278835 -16916597 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1960 476 240 75 110 chr1 180278835 180278903 -16916529 - B3A SINE B2 -122 76 16 4 1960 492 231 0 77 chr1 180279121 180279238 -16916194 + PB1D10 SINE Alu 1 108 -9 5 1960 229 250 145 0 chr1 180279266 180279342 -16916090 + MIR SINE MIR 107 193 -69 5 1960 275 188 99 99 chr1 180279616 180279687 -16915745 - ID4_ SINE ID -11 72 2 5 1960 1174 74 57 11 chr1 180279847 180280024 -16915408 - B2_Mm2 SINE B2 -4 191 7 5 1960 821 264 28 19 chr1 180280031 180280243 -16915189 - B3 SINE B2 -1 215 2 5 1960 646 196 95 29 chr1 180280612 180280749 -16914683 - B1_Mus2 SINE Alu 0 147 2 5 1960 242 203 141 0 chr1 180280750 180280814 -16914618 - Charlie9 DNA MER1_type -6 2751 2679 5 1960 915 196 16 22 chr1 180280829 180281012 -16914420 + B3A SINE B2 1 182 -16 5 1960 453 298 65 89 chr1 180281160 180281514 -16913918 + MLT1E2 LTR MaLR 3 307 -198 5 1960 336 229 94 9 chr1 180281626 180281732 -16913700 - HAL1 LINE L1 -886 1621 1507 5 1960 190 128 64 0 chr1 180281755 180281802 -16913630 + CT-rich Low_complexity Low_complexity 1 50 0 5 1960 736 225 22 22 chr1 180281816 180281853 -16913579 - B3A SINE B2 -16 182 144 5 1960 462 18 0 0 chr1 180281853 180281908 -16913524 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1960 736 225 22 22 chr1 180281908 180282052 -16913380 - B3A SINE B2 -55 143 2 5 1960 603 285 185 3 chr1 180282099 180282391 -16913041 + MER2 DNA MER2_type 1 345 0 5 1960 1176 54 0 26 chr1 180282468 180282620 -16912812 - B1_Mus1 SINE Alu 0 148 1 5 1960 421 130 2 50 chr1 180282728 180282828 -16912604 - L1Md_F2 LINE L1 0 6582 6485 5 1960 252 253 10 31 chr1 180283556 180283654 -16911778 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1960 600 281 204 0 chr1 180283657 180283709 -16911723 - B4A SINE B4 -6 286 211 5 1960 1011 219 5 24 chr1 180283709 180283920 -16911512 - B3 SINE B2 -8 208 2 5 1960 600 281 204 0 chr1 180283920 180284102 -16911330 - B4A SINE B4 -82 210 6 5 1960 248 261 49 57 chr1 180284451 180284573 -16910859 - Lx8 LINE L1 0 7473 7353 5 1960 324 94 0 0 chr1 180284643 180284696 -16910736 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1960 432 0 0 0 chr1 180284696 180284744 -16910688 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1960 721 262 47 24 chr1 180284811 180285022 -16910410 - ID_B1 SINE B4 0 224 9 5 1960 186 167 0 0 chr1 180285051 180285087 -16910345 + CT-rich Low_complexity Low_complexity 3 38 0 5 1960 669 162 0 0 chr1 180285092 180285203 -16910229 - B1_Mur4 SINE Alu -6 144 34 5 1960 411 297 0 0 chr1 180285205 180285306 -16910126 - ID_B1 SINE B4 -17 207 107 5 1960 21 36 0 0 chr1 180285400 180285428 -16910004 + AT_rich Low_complexity Low_complexity 1 28 0 5 1960 408 219 19 68 chr1 180285433 180285536 -16909896 - RSINE1 SINE B4 0 165 68 5 1960 266 202 250 21 chr1 180285536 180285632 -16909800 + MT2A LTR ERVL 1 118 -415 5 1960 351 0 0 0 chr1 180285634 180285673 -16909759 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1960 538 99 53 32 chr1 180285673 180285767 -16909665 - B1_Mus2 SINE Alu -10 137 42 5 1960 353 149 15 0 chr1 180285790 180285857 -16909575 + CT-rich Low_complexity Low_complexity 1 68 0 5 1960 189 0 0 0 chr1 180285857 180285878 -16909554 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1960 1295 20 0 0 chr1 180285885 180286032 -16909400 - B1_Mus1 SINE Alu 0 148 2 5 1960 315 118 321 26 chr1 180286043 180286155 -16909277 - B2_Mm2 SINE B2 -4 191 47 5 1960 991 127 30 0 chr1 180286202 180286367 -16909065 - B2_Mm1t SINE B2 -14 179 10 5 1960 271 146 21 0 chr1 180286389 180286437 -16908995 + MT2A LTR ERVL 94 142 -391 5 1960 2635 75 35 0 chr1 180286448 180286849 -16908583 - BGLII LTR ERVK -2 419 5 5 1960 939 197 264 0 chr1 180286854 180287153 -16908279 + MT2A LTR ERVL 154 531 -2 5 1960 312 342 0 48 chr1 180287332 180287458 -16907974 - PB1 SINE Alu -7 120 1 5 1960 408 71 0 0 chr1 180287466 180287522 -16907910 + (GGA)n Simple_repeat Simple_repeat 3 58 0 5 1960 696 160 41 4 chr1 180287616 180287791 -16907641 + B3 SINE B2 1 189 -6 5 1960 589 234 124 0 chr1 180287798 180287943 -16907489 - RSINE1 SINE B4 -1 164 2 5 1960 281 270 157 0 chr1 180288654 180288743 -16906689 - B1F1 SINE Alu -33 116 14 5 1960 435 286 51 58 chr1 180288776 180288932 -16906500 + ID_B1 SINE B4 70 224 0 5 1960 687 172 17 25 chr1 180289243 180289362 -16906070 - PB1D9 SINE Alu -1 119 2 5 1960 305 314 48 0 chr1 180289495 180289600 -16905832 + PB1D10 SINE Alu 2 111 -6 5 1960 1063 158 27 0 chr1 180289608 180289791 -16905641 + B2_Mm2 SINE B2 2 189 -6 5 1960 265 24 48 0 chr1 180289855 180289897 -16905535 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1960 702 271 32 20 chr1 180289953 180290192 -16905240 + L1M4 LINE L1 5370 5615 -2380 5 1960 417 230 106 20 chr1 180290294 180290531 -16904901 - MTEb LTR MaLR -7 372 114 5 1960 247 145 94 31 chr1 180290536 180290600 -16904832 - MTE2a LTR MaLR 0 379 312 5 1960 5229 87 36 16 chr1 180290634 180291521 -16903911 + RLTR13D3 LTR ERVK 1 1114 0 5 1960 1167 79 90 58 chr1 180291529 180291717 -16903715 + B2_Mm2 SINE B2 2 195 0 5 1960 996 114 76 43 chr1 180291728 180291912 -16903520 + B2_Mm2 SINE B2 3 192 -3 5 1960 465 301 91 88 chr1 180291936 180292035 -16903397 - MTE2a LTR MaLR -58 321 216 5 1960 941 125 14 14 chr1 180292035 180292181 -16903251 - B1_Mur3 SINE Alu -3 146 1 5 1960 465 301 91 88 chr1 180292181 180292401 -16903031 - MTE2a LTR MaLR -164 215 1 5 1960 234 211 83 14 chr1 180292403 180292475 -16902957 - ORR1E LTR MaLR -248 111 35 5 1960 378 258 158 7 chr1 180292911 180293063 -16902369 + MT2A LTR ERVL 357 531 -2 5 1960 377 125 26 53 chr1 180293557 180293633 -16901799 - ID4_ SINE ID -9 74 1 5 1960 742 277 117 31 chr1 180293805 180293945 -16901487 - MTE2a LTR MaLR -61 318 181 5 1960 420 20 0 0 chr1 180293945 180293994 -16901438 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1960 1130 37 0 0 chr1 180293994 180294129 -16901303 - B1_Mus1 SINE Alu -12 136 2 5 1960 742 277 117 31 chr1 180294129 180294244 -16901188 - MTE2a LTR MaLR -199 180 41 5 1960 180 0 0 0 chr1 180294249 180294269 -16901163 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1960 279 0 0 0 chr1 180294269 180294299 -16901133 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1960 325 317 58 8 chr1 180294329 180294450 -16900982 + B1F SINE Alu 22 148 -1 5 1960 26 82 0 0 chr1 180294974 180295035 -16900397 + AT_rich Low_complexity Low_complexity 1 61 0 5 1960 489 168 148 0 chr1 180295038 180295139 -16900293 - B1_Mus1 SINE Alu -25 123 8 5 1960 217 325 12 36 chr1 180295275 180295358 -16900074 - ID4 SINE ID -1 82 2 5 1960 302 264 127 0 chr1 180295368 180295478 -16899954 - PB1 SINE Alu -2 125 2 5 1960 375 185 53 32 chr1 180295486 180295581 -16899851 - PB1D10 SINE Alu 0 117 21 5 1960 416 205 11 43 chr1 180295514 180295606 -16899826 - ID_B1 SINE B4 -56 168 80 5 1960 402 277 8 40 chr1 180295826 180295904 -16899528 - ID_B1 SINE B4 0 224 150 5 1960 4137 38 14 14 chr1 180295904 180296415 -16899017 - L1Md_F3 LINE L1 0 6584 6074 5 1960 402 277 8 40 chr1 180296415 180296460 -16898972 - ID_B1 SINE B4 -75 149 105 5 1960 308 24 24 0 chr1 180296834 180296875 -16898557 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1960 592 248 49 14 chr1 180296929 180297072 -16898360 - B1_Mur1 SINE Alu -1 148 1 5 1960 579 223 89 22 chr1 180297072 180297249 -16898183 - B4A SINE B4 -63 229 41 5 1960 931 109 12 81 chr1 180297423 180297583 -16897849 - B1_Mur4 SINE Alu 0 150 2 5 1960 234 0 0 0 chr1 180297673 180297699 -16897733 + (G)n Simple_repeat Simple_repeat 1 26 0 5 1960 23 33 0 0 chr1 180298575 180298605 -16896827 + AT_rich Low_complexity Low_complexity 1 30 0 5 1960 475 258 47 0 chr1 180298686 180298814 -16896618 + RSINE1 SINE B4 17 150 -15 5 1960 341 328 0 9 chr1 180299893 180300007 -16895425 - RSINE1 SINE B4 -35 130 18 5 1960 345 284 76 59 chr1 180300185 180300421 -16895011 - L1MC5 LINE L1 -816 7145 6906 5 1960 2348 124 0 13 chr1 180300454 180300830 -16894602 + MTB_Mm LTR MaLR 1 371 -36 5 1960 290 83 0 59 chr1 180301026 180301077 -16894355 + B1_Mur4 SINE Alu 95 142 -8 5 1960 356 290 45 45 chr1 180301235 180301347 -16894085 + RSINE1 SINE B4 7 118 -47 5 1960 1596 42 5 0 chr1 180301348 180301538 -16893894 + B2_Mm1a SINE B2 2 192 -1 5 1960 1137 52 0 0 chr1 180301550 180301685 -16893747 + B1_Mus2 SINE Alu 1 135 -12 5 1960 321 47 0 0 chr1 180301688 180301731 -16893701 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1960 948 209 14 41 chr1 180301938 180302158 -16893274 + B3 SINE B2 1 214 -2 5 1960 374 283 19 76 chr1 180302277 180302329 -16893103 - B1F2 SINE Alu 0 149 108 5 1960 242 29 0 28 chr1 180302334 180302370 -16893062 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1960 1115 70 0 0 chr1 180302370 180302507 -16892925 - B1_Mus1 SINE Alu -9 139 3 5 1960 444 255 0 10 chr1 180302507 180302610 -16892822 - ID_B1 SINE B4 -39 185 84 5 1960 209 83 28 0 chr1 180302855 180302891 -16892541 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1960 265 257 14 0 chr1 180303296 180303366 -16892066 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1960 267 330 98 0 chr1 180303523 180303635 -16891797 - MIR SINE MIR -79 183 61 5 1960 826 190 32 2 chr1 180303662 180303850 -16891582 + B3A SINE B2 1 197 -19 5 1960 261 0 0 0 chr1 180303866 180303895 -16891537 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1960 270 0 0 0 chr1 180303895 180303924 -16891508 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1960 245 229 98 0 chr1 180303927 180303988 -16891444 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 5 1960 881 258 19 5 chr1 180304366 180304576 -16890856 - B3 SINE B2 -3 213 1 5 1960 24 0 0 0 chr1 180304697 180304721 -16890711 + AT_rich Low_complexity Low_complexity 1 24 0 6 1960 628 269 12 18 chr1 180304823 180304986 -16890446 - RSINE1 SINE B4 -2 163 2 6 1960 324 0 0 0 chr1 180305019 180305055 -16890377 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1960 378 0 0 0 chr1 180305073 180305115 -16890317 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1960 516 303 0 0 chr1 180305115 180305237 -16890195 - RSINE1 SINE B4 -41 124 3 6 1960 474 227 75 8 chr1 180305237 180305370 -16890062 - L1MB7 LINE L1 -119 6065 5924 6 1960 1078 199 19 14 chr1 180305599 180305808 -16889624 - B3 SINE B2 -5 211 2 6 1960 348 226 75 6 chr1 180305859 180305960 -16889472 + B1F SINE Alu 17 117 0 6 1960 225 200 0 0 chr1 180305960 180306005 -16889427 + A-rich Low_complexity Low_complexity 1 45 0 6 1960 1564 133 137 108 chr1 180306147 180306526 -16888906 - ORR1B1 LTR MaLR 0 394 5 6 1960 762 143 0 0 chr1 180306628 180306789 -16888643 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 1960 318 287 20 41 chr1 180306790 180306812 -16888620 - RSINE1 SINE B4 0 165 146 6 1960 231 61 0 0 chr1 180306812 180306845 -16888587 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1960 318 287 20 41 chr1 180306845 180306920 -16888512 - RSINE1 SINE B4 -20 145 70 6 1960 539 282 68 34 chr1 180307301 180307477 -16887955 + B3A SINE B2 1 182 -16 6 1960 321 237 66 0 chr1 180307737 180307813 -16887619 - ID4 SINE ID -1 82 2 6 1960 254 274 60 0 chr1 180308575 180308659 -16886773 - ORR1E LTR MaLR -268 91 3 6 1960 733 192 149 41 chr1 180308792 180308987 -16886445 - B3 SINE B2 0 216 1 6 1960 949 67 232 39 chr1 180309105 180309260 -16886172 - B2_Mm2 SINE B2 -9 186 2 6 1960 312 187 53 0 chr1 180309419 180309494 -16885938 - PB1D10 SINE Alu -30 87 9 6 1960 190 132 19 19 chr1 180309745 180309774 -16885658 + T-rich Low_complexity Low_complexity 26 54 0 6 1960 198 0 0 0 chr1 180309774 180309796 -16885636 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1960 190 132 19 19 chr1 180309796 180309820 -16885612 + T-rich Low_complexity Low_complexity 1 25 0 6 1960 1154 88 0 0 chr1 180309823 180309970 -16885462 - B1_Mm SINE Alu 0 147 1 6 1960 1218 61 0 0 chr1 180309973 180310121 -16885311 - B1_Mus1 SINE Alu 0 148 1 6 1960 513 157 186 102 chr1 180310123 180310300 -16885132 - B3A SINE B2 -2 196 5 6 1960 725 42 0 0 chr1 180310382 180310478 -16884954 - MT2B2 LTR ERVL -488 96 1 6 1960 3525 20 2 0 chr1 180310497 180310892 -16884540 + MTA_Mm LTR MaLR 1 396 0 6 1960 540 15 0 0 chr1 180311407 180311473 -16883959 + MTB LTR MaLR 335 400 0 6 1960 693 208 35 55 chr1 180311502 180311531 -16883901 - B2_Mm2 SINE B2 0 195 163 6 1960 450 0 0 0 chr1 180311531 180311581 -16883851 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 6 1960 693 208 35 55 chr1 180311581 180311643 -16883789 - B2_Mm2 SINE B2 -33 162 107 6 1960 3354 36 5 8 chr1 180311643 180312040 -16883392 + MTA_Mm LTR MaLR 1 396 0 6 1960 693 208 35 55 chr1 180312040 180312146 -16883286 - B2_Mm2 SINE B2 -89 106 2 6 1960 358 276 94 8 chr1 180312154 180312271 -16883161 - B1F SINE Alu -5 144 18 6 1960 439 219 176 14 chr1 180312506 180312654 -16882778 - MIR SINE MIR -77 185 14 6 1960 373 181 157 0 chr1 180312906 180312989 -16882443 + RSINE1 SINE B4 2 97 -68 6 1960 283 224 0 50 chr1 180313149 180313229 -16882203 + MurSatRep1 Unknown Unknown 203 278 -1859 6 1960 588 230 104 33 chr1 180313397 180313580 -16881852 + B3A SINE B2 5 187 -8 6 1960 572 175 97 0 chr1 180313687 180313790 -16881642 - PB1D9 SINE Alu -7 113 1 6 1960 2037 151 37 168 chr1 180313923 180314458 -16880974 - RMER4A LTR ERVK 0 466 2 6 1960 293 238 0 31 chr1 180314505 180314570 -16880862 + RSINE1 SINE B4 10 72 -93 6 1960 1342 226 79 73 chr1 180314848 180315216 -16880216 + ORR1D2 LTR MaLR 1 370 0 6 1960 488 170 85 0 chr1 180315252 180315358 -16880074 - B1_Mur1 SINE Alu -22 127 13 6 1960 334 276 9 28 chr1 180315373 180315481 -16879951 - PB1D10 SINE Alu -9 108 3 6 1960 237 353 10 0 chr1 180315767 180315869 -16879563 - BC1_Mm scRNA scRNA -49 103 1 6 1960 586 198 35 0 chr1 180315883 180315999 -16879433 - ID_B1 SINE B4 -3 221 102 6 1960 263 228 24 37 chr1 180316255 180316266 -16879166 + B4 SINE B4 5 85 -207 6 1960 333 203 14 28 chr1 180316266 180316337 -16879095 + ID4 SINE ID 14 83 0 6 1960 524 221 100 7 chr1 180316631 180316781 -16878651 - B4A SINE B4 -14 278 115 6 1960 201 39 0 0 chr1 180317395 180317421 -16878011 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1960 657 66 47 0 chr1 180317470 180317576 -16877856 + (TCCCC)n Simple_repeat Simple_repeat 5 115 0 6 1960 247 225 56 0 chr1 180317588 180317659 -16877773 - B1_Mur1 SINE Alu 0 149 75 6 1960 919 161 13 0 chr1 180317699 180317848 -16877584 - B3A SINE B2 -47 151 1 6 1960 698 215 7 7 chr1 180317936 180318072 -16877360 + B1_Mur1 SINE Alu 6 141 -8 6 1960 342 0 0 0 chr1 180318073 180318111 -16877321 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1960 498 211 58 16 chr1 180318137 180318259 -16877173 - RSINE1 SINE B4 -28 137 5 6 1960 378 281 13 42 chr1 180318351 180318487 -16876945 - MIRb SINE MIR -111 157 16 6 1960 357 240 189 8 chr1 180318622 180318744 -16876688 - B1_Mur2 SINE Alu -5 144 1 6 1960 583 194 24 16 chr1 180318785 180318911 -16876521 + ID_B1 SINE B4 98 224 0 6 1960 555 246 15 44 chr1 180319395 180319531 -16875901 - B1F1 SINE Alu -13 136 5 6 1960 473 180 17 2 chr1 180319789 180319898 -16875534 + B1_Mur4 SINE Alu 10 123 -27 6 1960 3472 25 5 0 chr1 180319942 180320336 -16875096 - MTA_Mm LTR MaLR 0 396 1 6 1960 338 257 55 21 chr1 180320512 180320625 -16874807 + PB1D7 SINE Alu 1 112 -8 6 1960 231 61 0 0 chr1 180320661 180320694 -16874738 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1960 408 219 0 33 chr1 180320758 180320872 -16874560 + B1_Mur2 SINE Alu 42 149 0 6 1960 589 173 10 0 chr1 180320949 180321053 -16874379 + U6 snRNA snRNA 1 105 -2 6 1960 370 293 73 21 chr1 180321440 180321632 -16873800 + MTEb LTR MaLR 168 369 -10 6 1960 2471 198 37 2 chr1 180321836 180322275 -16873157 + RLTR20A1 LTR ERVK 4 446 -105 6 1960 432 0 0 0 chr1 180322275 180322323 -16873109 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1960 2471 198 37 2 chr1 180322323 180322400 -16873032 + RLTR20A1 LTR ERVK 447 537 -14 6 1960 963 178 0 30 chr1 180322438 180322641 -16872791 - B3 SINE B2 -5 211 15 6 1960 334 179 64 0 chr1 180322714 180322792 -16872640 + MTE2b LTR MaLR 59 141 -238 6 1960 2065 170 88 19 chr1 180322782 180323214 -16872218 + RLTR12B LTR ERVK 42 503 -25 6 1960 603 224 81 16 chr1 180323268 180323454 -16871978 + MTE2b LTR MaLR 181 378 -1 6 1960 427 341 23 8 chr1 180323454 180323587 -16871845 + B1F1 SINE Alu 10 144 -5 6 1960 685 279 140 0 chr1 180323654 180323833 -16871599 + B3 SINE B2 2 205 -11 6 1960 1478 60 11 0 chr1 180323868 180324053 -16871379 + B2_Mm2 SINE B2 1 187 -8 6 1960 42 20 0 0 chr1 180324054 180324103 -16871329 + AT_rich Low_complexity Low_complexity 1 49 0 6 1960 21 71 0 0 chr1 180324131 180324173 -16871259 + AT_rich Low_complexity Low_complexity 1 42 0 6 1960 490 222 119 0 chr1 180324463 180324589 -16870843 + B1_Mur1 SINE Alu 7 147 -2 6 1960 207 100 0 0 chr1 180324628 180324658 -16870774 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 6 1960 282 239 0 129 chr1 180324758 180324859 -16870573 + ID_B1 SINE B4 80 167 -57 6 1960 292 252 46 83 chr1 180324771 180324879 -16870553 + PB1D7 SINE Alu 9 112 -8 6 1960 259 293 24 12 chr1 180325069 180325152 -16870280 + U13_ snRNA snRNA 19 102 -6 6 1960 1200 229 69 40 chr1 180325222 180325568 -16869864 - ORR1E LTR MaLR -2 357 2 6 1960 195 361 39 59 chr1 180326566 180326719 -16868713 + MIRb SINE MIR 97 246 -22 6 1960 234 320 0 28 chr1 180326882 180326989 -16868443 + ID4 SINE ID 2 104 -48 6 1960 1715 167 22 39 chr1 180327149 180327505 -16867927 - ORR1D1 LTR MaLR 0 374 25 6 1960 1884 150 48 6 chr1 180327507 180327822 -16867610 - ORR1A4 LTR MaLR -1 328 1 6 1960 378 0 0 0 chr1 180328042 180328084 -16867348 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1960 788 244 0 0 chr1 180328112 180328272 -16867160 - B3A SINE B2 -37 161 2 6 1960 611 152 9 0 chr1 180328292 180328404 -16867028 + CT-rich Low_complexity Low_complexity 3 115 0 6 1960 376 184 0 0 chr1 180328404 180328480 -16866952 - RMER1B Other Other -14 1052 977 6 1960 2138 110 0 3 chr1 180328480 180328800 -16866632 + ORR1A3 LTR MaLR 1 319 -7 6 1960 3032 168 25 41 chr1 180328803 180329439 -16865993 - RMER1B Other Other -87 979 291 6 1960 490 147 5 86 chr1 180329470 180329656 -16865776 + C-rich Low_complexity Low_complexity 6 176 0 6 1960 327 182 121 0 chr1 180329660 180329726 -16865706 - ID2 SINE ID -5 78 5 6 1960 24 0 0 0 chr1 180329735 180329759 -16865673 + AT_rich Low_complexity Low_complexity 1 24 0 6 1960 378 0 0 0 chr1 180329771 180329813 -16865619 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1960 507 302 0 7 chr1 180329814 180329964 -16865468 - RSINE1 SINE B4 -15 150 2 6 1960 213 39 0 0 chr1 180330429 180330455 -16864977 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1960 3034 122 26 18 chr1 180330457 180330948 -16864484 - Lx2 LINE L1 0 6997 6503 6 1960 702 201 22 7 chr1 180331400 180331535 -16863897 - B1_Mus1 SINE Alu -11 137 1 6 1960 575 247 116 16 chr1 180331640 180331829 -16863603 - ID_B1 SINE B4 -14 210 3 6 1960 1915 186 8 14 chr1 180332501 180332871 -16862561 - ORR1C1 LTR MaLR -5 373 6 6 1960 2135 129 100 15 chr1 180332869 180333278 -16862154 + RMER19B LTR ERVK 459 902 0 6 1960 1165 89 0 0 chr1 180333395 180333541 -16861891 - B1_Mus1 SINE Alu 0 148 3 7 1960 356 277 30 0 chr1 180333590 180333691 -16861741 - PB1D7 SINE Alu -1 119 16 7 1960 253 308 0 37 chr1 180333751 180333832 -16861600 - ID4_ SINE ID 0 83 6 7 1960 395 141 28 14 chr1 180333836 180333908 -16861524 - ID_B1 SINE B4 -33 191 119 7 1960 371 288 18 9 chr1 180334281 180334393 -16861039 + PB1 SINE Alu 15 127 0 7 1960 197 83 0 27 chr1 180334433 180334470 -16860962 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1960 63 0 0 0 chr1 180334724 180334787 -16860645 + AT_rich Low_complexity Low_complexity 1 63 0 7 1960 224 149 21 0 chr1 180334844 180334891 -16860541 + T-rich Low_complexity Low_complexity 2 49 0 7 1960 927 25 0 0 chr1 180334913 180335031 -16860401 - B1_Mus2 SINE Alu 0 147 30 7 1960 22 35 0 0 chr1 180335183 180335212 -16860220 + AT_rich Low_complexity Low_complexity 1 29 0 7 1960 246 32 0 0 chr1 180335395 180335426 -16860006 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1960 468 0 0 0 chr1 180335692 180335744 -16859688 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1960 205 222 0 18 chr1 180335968 180336023 -16859409 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 7 1960 189 0 0 0 chr1 180337047 180337068 -16858364 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 7 1960 877 103 73 0 chr1 180337176 180337312 -16858120 - B1_Mm SINE Alu 0 147 2 7 1960 1125 82 0 7 chr1 180337571 180337719 -16857713 + B1_Mus2 SINE Alu 1 147 0 7 1960 22 0 0 0 chr1 180337837 180337859 -16857573 + AT_rich Low_complexity Low_complexity 1 22 0 7 1960 737 142 0 0 chr1 180337900 180338020 -16857412 - B3 SINE B2 -86 130 11 7 1960 183 42 0 0 chr1 180338039 180338063 -16857369 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1960 829 138 0 0 chr1 180338063 180338193 -16857239 - RMER6B LTR ERVK -8 453 324 7 1960 816 148 6 63 chr1 180338215 180338374 -16857058 - RMER6B LTR ERVK -251 210 61 7 1960 261 0 0 0 chr1 180338501 180338530 -16856902 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1960 430 240 19 29 chr1 180338536 180338639 -16856793 - PB1D9 SINE Alu -17 103 2 7 1960 242 255 48 58 chr1 180339373 180339477 -16855955 - ORR1E LTR MaLR -167 192 90 7 1960 468 194 150 24 chr1 180339613 180339740 -16855692 + B1_Mus2 SINE Alu 5 147 0 7 1960 243 88 0 0 chr1 180339743 180339777 -16855655 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 7 1960 202 220 0 0 chr1 180340054 180340104 -16855328 + T-rich Low_complexity Low_complexity 1 50 0 7 1960 648 280 90 34 chr1 180340498 180340764 -16854668 + B4A SINE B4 4 284 -8 7 1960 405 0 0 0 chr1 180340780 180340825 -16854607 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1960 1185 62 0 0 chr1 180340882 180341027 -16854405 - B1_Mus2 SINE Alu -1 146 2 7 1960 291 335 67 6 chr1 180341078 180341243 -16854189 + MIRb SINE MIR 14 188 -80 7 1960 441 235 33 105 chr1 180341255 180341407 -16854025 - B1_Mur2 SINE Alu -6 143 3 7 1960 618 298 14 33 chr1 180342074 180342286 -16853146 - ID_B1 SINE B4 -15 209 2 7 1960 1196 172 46 8 chr1 180343610 180343850 -16851582 - ORR1C1 LTR MaLR -129 249 1 7 1960 1201 182 99 62 chr1 180344071 180344259 -16851173 + MTD LTR MaLR 2 196 -223 7 1960 2258 95 25 30 chr1 180344259 180344566 -16850866 + L1_Mus3 LINE L1 6272 6583 -55 7 1960 2580 82 188 0 chr1 180344566 180344966 -16850466 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1960 2258 95 25 30 chr1 180344966 180345026 -16850406 + L1_Mus3 LINE L1 6584 6637 -1 7 1960 1201 182 99 62 chr1 180345026 180345240 -16850192 + MTD LTR MaLR 197 419 0 7 1960 676 81 0 0 chr1 180345327 180345414 -16850018 - L1_Mus3 LINE L1 -196 6442 6356 7 1960 309 135 0 0 chr1 180345613 180345665 -16849767 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1960 437 316 86 13 chr1 180346413 180346647 -16848785 - MER21B LTR ERV1 -157 706 456 7 1960 365 343 51 28 chr1 180346735 180346912 -16848520 - MER21B LTR ERV1 -524 339 159 7 1960 196 308 154 0 chr1 180346961 180347065 -16848367 - MIRb SINE MIR -46 222 103 7 1960 212 243 13 91 chr1 180347083 180347160 -16848272 + B4 SINE B4 4 74 -218 7 1960 512 296 22 22 chr1 180347134 180347269 -16848163 + B1F SINE Alu 12 146 -3 7 1960 519 281 23 0 chr1 180347355 180347483 -16847949 - B1F1 SINE Alu -16 133 3 7 1960 23 33 0 0 chr1 180347499 180347529 -16847903 + AT_rich Low_complexity Low_complexity 1 30 0 7 1960 186 167 0 0 chr1 180347593 180347629 -16847803 + CT-rich Low_complexity Low_complexity 1 36 0 7 1960 674 186 0 25 chr1 180347629 180347750 -16847682 - B1_Mur4 SINE Alu -21 129 12 7 1960 387 297 0 52 chr1 180347632 180347767 -16847665 - ID_B1 SINE B4 -21 203 76 7 1960 328 260 0 138 chr1 180347653 180347805 -16847627 - MT2B LTR ERVL -344 257 127 7 1960 22 80 0 0 chr1 180348295 180348345 -16847087 + AT_rich Low_complexity Low_complexity 1 50 0 7 1960 239 277 177 9 chr1 180348446 180348559 -16846873 - MLT1F1 LTR MaLR 0 569 438 7 1960 225 154 0 0 chr1 180348620 180348659 -16846773 + T-rich Low_complexity Low_complexity 1 39 0 7 1960 552 267 135 32 chr1 180348788 180349070 -16846362 - MLT1F1-int LTR MaLR -93 1396 1086 7 1960 207 0 0 0 chr1 180349159 180349182 -16846250 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1960 327 290 60 0 chr1 180349424 180349524 -16845908 - PB1D10 SINE Alu -3 114 9 7 1960 209 108 27 0 chr1 180350039 180350076 -16845356 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 7 1960 1216 92 3 16 chr1 180350078 180350443 -16844989 + (TTTC)n Simple_repeat Simple_repeat 1 359 0 7 1960 486 220 13 120 chr1 180350443 180350593 -16844839 - B1_Mus1 SINE Alu -14 134 1 7 1960 242 160 20 0 chr1 180350824 180350874 -16844558 + GA-rich Low_complexity Low_complexity 3 53 0 7 1960 233 264 27 14 chr1 180351946 180352019 -16843413 - MER5B DNA MER1_type -3 175 102 7 1960 1056 30 0 0 chr1 180352558 180352692 -16842740 + B1_Mus1 SINE Alu 15 148 0 7 1960 216 0 0 0 chr1 180352692 180352716 -16842716 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1960 642 148 350 13 chr1 180353144 180353301 -16842131 - B3 SINE B2 -6 210 1 7 1960 615 245 57 14 chr1 180353336 180353477 -16841955 + B3A SINE B2 2 148 -50 7 1960 207 0 0 0 chr1 180353480 180353503 -16841929 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1960 21 57 0 0 chr1 180353511 180353546 -16841886 + AT_rich Low_complexity Low_complexity 1 35 0 7 1960 660 227 68 0 chr1 180353546 180353678 -16841754 + B1_Mur1 SINE Alu 2 142 -7 7 1960 862 198 0 0 chr1 180353730 180353892 -16841540 - B3A SINE B2 -36 162 1 7 1960 367 228 38 0 chr1 180354196 180354275 -16841157 - ID4_ SINE ID 0 83 2 7 1960 21 36 0 0 chr1 180354829 180354857 -16840575 + AT_rich Low_complexity Low_complexity 1 28 0 7 1961 551 233 79 129 chr1 180355141 180355382 -16840050 + B4 SINE B4 2 248 -44 7 1961 234 0 0 0 chr1 180355396 180355422 -16840010 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 1961 336 94 0 0 chr1 180355424 180355477 -16839955 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1961 396 256 33 0 chr1 180355573 180355663 -16839769 - PB1D7 SINE Alu -21 99 7 7 1961 200 268 0 18 chr1 180355735 180355792 -16839640 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1961 1919 152 17 26 chr1 180355847 180356198 -16839234 - RMER19B LTR ERVK -9 893 546 7 1961 313 258 47 24 chr1 180356523 180356650 -16838782 - L1M3 LINE L1 -2098 4042 3913 7 1961 357 125 0 0 chr1 180356676 180356732 -16838700 + (TCC)n Simple_repeat Simple_repeat 2 57 0 7 1961 839 132 278 19 chr1 180356760 180356922 -16838510 + B3 SINE B2 2 205 -11 7 1961 716 120 8 17 chr1 180356941 180357060 -16838372 - B1_Mus2 SINE Alu -7 140 23 7 1961 789 272 6 0 chr1 180357059 180357239 -16838193 - B3 SINE B2 -35 181 1 7 1961 300 300 12 0 chr1 180357383 180357463 -16837969 + PB1 SINE Alu 22 102 -25 7 1961 941 153 227 0 chr1 180357491 180357667 -16837765 + B3 SINE B2 1 216 0 7 1961 238 258 48 0 chr1 180357856 180357918 -16837514 - PB1 SINE Alu -14 113 49 7 1961 696 223 7 17 chr1 180358169 180358363 -16837069 - B3A SINE B2 -6 189 1 7 1961 1219 48 0 0 chr1 180358375 180358522 -16836910 - B1_Mm SINE Alu 0 147 1 7 1961 231 88 0 0 chr1 180358534 180358568 -16836864 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 7 1961 259 268 166 48 chr1 180358573 180358601 -16836831 - RSINE1 SINE B4 -1 164 3 7 1961 606 161 8 43 chr1 180358601 180358718 -16836714 - B3A SINE B2 -84 114 2 7 1961 8143 65 6 3 chr1 180358749 180360271 -16835161 - L1_Mus1 LINE L1 -1 6566 5043 7 1961 744 236 65 132 chr1 180360271 180360657 -16834775 - RLTR12B LTR ERVK -31 497 138 7 1961 453 207 32 16 chr1 180360828 180360951 -16834481 - L1M3 LINE L1 -551 5632 5508 7 1961 325 255 74 11 chr1 180360972 180361067 -16834365 - MLT1A1 LTR MaLR -12 396 296 7 1961 564 116 0 0 chr1 180361406 180361492 -16833940 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 1961 305 292 94 12 chr1 180361769 180361939 -16833493 + L1MC4 LINE L1 7695 7878 -164 7 1961 240 239 0 0 chr1 180362391 180362437 -16832995 - ID4 SINE ID -31 52 7 7 1961 594 282 0 40 chr1 180362487 180362635 -16832797 - RSINE1 SINE B4 -21 144 3 7 1961 727 230 68 0 chr1 180362762 180362910 -16832522 + B3A SINE B2 2 159 -39 7 1961 366 290 11 11 chr1 180362982 180363076 -16832356 - ID_B1 SINE B4 -48 176 83 7 1961 896 189 0 0 chr1 180363086 180363234 -16832198 - B1_Mur2 SINE Alu -1 148 1 7 1961 369 231 62 44 chr1 180363419 180363532 -16831900 + PB1D9 SINE Alu 5 119 -1 7 1961 846 226 16 0 chr1 180363851 180364041 -16831391 + ID_B1 SINE B4 1 193 -31 7 1961 282 29 0 0 chr1 180364082 180364117 -16831315 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 8 1961 896 237 120 8 chr1 180364118 180364377 -16831055 - B4A SINE B4 -4 288 1 8 1961 246 326 52 15 chr1 180365185 180365319 -16830113 + MIR3 SINE MIR 7 145 -63 8 1961 303 318 139 26 chr1 180365760 180366105 -16829327 + L2 LINE L2 2521 2904 -515 8 1961 592 248 44 121 chr1 180366727 180366975 -16828457 + B4A SINE B4 6 234 -58 8 1961 726 12 0 0 chr1 180366987 180367070 -16828362 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 8 1961 24 53 0 0 chr1 180367623 180367661 -16827771 + AT_rich Low_complexity Low_complexity 1 38 0 8 1961 714 273 44 71 chr1 180367958 180368254 -16827178 + B4A SINE B4 5 292 0 8 1961 239 379 0 0 chr1 180368457 180368544 -16826888 + PB1D10 SINE Alu 4 90 -27 8 1961 7109 49 7 1 chr1 180369113 180369978 -16825454 - L1Md_F2 LINE L1 0 6582 5713 8 1961 5989 46 1 3 chr1 180369975 180370694 -16824738 + L1Md_F2 LINE L1 4984 5701 -182 8 1961 798 283 38 103 chr1 180370694 180371064 -16824368 - MTE2b LTR MaLR -31 348 3 8 1961 299 289 0 13 chr1 180371348 180371425 -16824007 - ID4_ SINE ID -5 78 3 8 1961 643 259 63 21 chr1 180371755 180371992 -16823440 - Charlie26a DNA MER1_type -13 312 66 8 1961 472 258 24 2 chr1 180372007 180372152 -16823280 - B1F SINE Alu 0 149 4 8 1961 281 247 129 0 chr1 180372702 180372795 -16822637 + PB1D10 SINE Alu 12 116 -1 8 1961 467 88 15 0 chr1 180373127 180373195 -16822237 + RLTR28 LTR ERVL 442 510 -14 8 1961 546 210 48 8 chr1 180373339 180373464 -16821968 + ID_B1 SINE B4 86 215 -9 8 1961 1125 82 0 13 chr1 180373515 180373664 -16821768 + B1_Mus1 SINE Alu 2 148 0 8 1961 1047 107 6 17 chr1 180373667 180373847 -16821585 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 8 1961 222 246 0 0 chr1 180374082 180374143 -16821289 + CT-rich Low_complexity Low_complexity 2 62 0 8 1961 384 40 0 0 chr1 180374143 180374193 -16821239 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1961 240 271 0 54 chr1 180375098 180375172 -16820260 - ID4_ SINE ID -12 71 2 8 1961 406 270 29 21 chr1 180375196 180375336 -16820096 + L1M4 LINE L1 4629 4769 -1377 8 1961 418 296 70 0 chr1 180375360 180375532 -16819900 + L1M4 LINE L1 4912 5095 -1051 8 1961 1095 232 139 63 chr1 180375537 180375933 -16819499 - Lx9 LINE L1 -1132 6512 6087 8 1961 2519 191 109 3 chr1 180375962 180376531 -16818901 + Lx9 LINE L1 7009 7637 -7 8 1961 753 183 117 12 chr1 180376555 180376726 -16818706 + B3A SINE B2 2 190 -8 8 1961 299 355 14 48 chr1 180377522 180377667 -16817765 + RSINE1 SINE B4 4 143 -22 8 1961 830 239 147 18 chr1 180377686 180377724 -16817708 - L1M2 LINE L1 -739 5561 5501 8 1961 942 26 0 0 chr1 180377724 180377837 -16817595 + (TCCCC)n Simple_repeat Simple_repeat 1 113 0 8 1961 977 241 115 14 chr1 180377837 180378221 -16817211 - L1M2 LINE L1 -800 5500 5094 8 1961 236 237 110 30 chr1 180378698 180378798 -16816634 + L2a LINE L2 3226 3333 -93 8 1961 243 179 96 60 chr1 180379124 180379207 -16816225 + L2c LINE L2 3299 3384 -3 8 1961 279 0 0 0 chr1 180379392 180379423 -16816009 + (TGG)n Simple_repeat Simple_repeat 2 32 0 8 1961 24 53 0 0 chr1 180379816 180379854 -16815578 + AT_rich Low_complexity Low_complexity 1 38 0 8 1961 352 229 84 0 chr1 180380090 180380173 -16815259 + B3A SINE B2 3 92 -106 8 1961 953 135 0 39 chr1 180380357 180380511 -16814921 + B1_Mur3 SINE Alu 1 148 -1 8 1961 683 184 41 62 chr1 180380554 180380699 -16814733 - B1F1 SINE Alu -2 147 6 8 1961 286 290 113 57 chr1 180380727 180380833 -16814599 + B1F1 SINE Alu 6 117 0 8 1961 1046 226 58 0 chr1 180380878 180381135 -16814297 + B4A SINE B4 1 272 -20 8 1961 635 265 14 0 chr1 180381176 180381323 -16814109 - B1_Mur2 SINE Alu 0 149 1 8 1961 811 167 14 48 chr1 180381343 180381488 -16813944 + B1_Mur2 SINE Alu 1 140 -9 8 1961 839 196 0 39 chr1 180381535 180381689 -16813743 + RSINE1 SINE B4 1 148 -17 8 1961 2314 59 0 25 chr1 180381884 180382199 -16813233 - MusHAL1 LINE L1 -15 2697 2391 8 1961 2590 294 93 31 chr1 180382324 180382847 -16812585 - Lx8 LINE L1 -365 7331 6802 8 1961 2297 99 99 3 chr1 180382847 180383180 -16812252 + ORR1B2 LTR MaLR 3 367 0 8 1961 2590 292 106 28 chr1 180383180 180383860 -16811572 - Lx8 LINE L1 -661 6812 6050 8 1961 543 234 28 28 chr1 180384041 180384186 -16811246 - ID_B1 SINE B4 0 224 80 8 1961 506 16 16 0 chr1 180386073 180386136 -16809296 + (CCAA)n Simple_repeat Simple_repeat 2 65 0 8 1961 207 272 0 12 chr1 180386410 180386492 -16808940 + A-rich Low_complexity Low_complexity 4 84 0 8 1961 209 161 0 0 chr1 180386433 180386464 -16808968 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8 1961 1348 76 37 16 chr1 180386562 180386749 -16808683 - B2_Mm1a SINE B2 -1 192 2 8 1961 966 111 14 7 chr1 180386755 180386900 -16808532 - B1_Mus1 SINE Alu 0 148 3 8 1961 346 217 26 62 chr1 180387312 180387425 -16808007 - MER57A-int LTR ERV1 -278 5909 5801 8 1961 1231 69 57 6 chr1 180387999 180388175 -16807257 + B2_Mm2 SINE B2 2 186 -9 8 1961 439 304 137 52 chr1 180388934 180389022 -16806410 - ORR1E LTR MaLR -2 357 278 8 1961 1000 139 155 30 chr1 180389022 180389222 -16806210 - URR1B DNA MER1_type 0 225 1 8 1961 439 304 137 52 chr1 180389222 180389462 -16805970 - ORR1E LTR MaLR -82 277 1 8 1961 744 131 8 0 chr1 180389710 180389832 -16805600 + B1_Mus1 SINE Alu 26 148 0 8 1961 189 0 0 0 chr1 180390663 180390684 -16804748 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1961 516 180 8 41 chr1 180390684 180390952 -16804480 + (TA)n Simple_repeat Simple_repeat 1 258 0 8 1961 351 96 0 0 chr1 180391150 180391202 -16804230 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1961 180 0 0 0 chr1 180391202 180391222 -16804210 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1961 4582 36 65 4 chr1 180391227 180391780 -16803652 + LTRIS_Mus LTR ERV1 1 587 0 8 1961 1142 191 151 178 chr1 180391780 180392263 -16803169 - MT2A LTR ERVL -56 477 8 8 1961 3836 149 103 80 chr1 180392416 180393257 -16802175 + RMER19B LTR ERVK 1 869 -33 8 1961 1410 62 11 6 chr1 180393257 180393436 -16801996 + B2_Mm2 SINE B2 2 181 -14 8 1961 3836 149 103 80 chr1 180393436 180393475 -16801957 + RMER19B LTR ERVK 870 902 0 8 1961 208 0 0 59 chr1 180394275 180394309 -16801123 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1961 599 215 81 0 chr1 180394338 180394487 -16800945 - MTEb LTR MaLR -2 377 217 8 1961 501 259 7 24 chr1 180394499 180394638 -16800794 - MTEb LTR MaLR -241 138 2 8 1961 233 196 0 0 chr1 180394643 180394694 -16800738 - MTEb LTR MaLR -326 53 3 8 1961 1699 165 63 30 chr1 180395383 180395745 -16799687 + ORR1D1 LTR MaLR 1 374 0 8 1961 22 0 0 0 chr1 180396259 180396281 -16799151 + AT_rich Low_complexity Low_complexity 1 22 0 8 1961 389 252 27 36 chr1 180396312 180396423 -16799009 + PB1D10 SINE Alu 2 111 -6 8 1961 333 47 0 0 chr1 180396521 180396564 -16798868 + (CAGC)n Simple_repeat Simple_repeat 4 46 0 8 1961 244 296 114 100 chr1 180396600 180396649 -16798783 - HAL1 LINE L1 -981 1526 1467 8 1961 630 0 0 0 chr1 180396649 180396719 -16798713 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 8 1961 961 72 242 0 chr1 180396719 180396872 -16798560 - B2_Mm2 SINE B2 -5 190 1 8 1961 244 296 114 100 chr1 180396872 180397110 -16798322 - HAL1 LINE L1 -1041 1466 1235 8 1961 1232 187 172 42 chr1 180397411 180397547 -16797885 - Lx7 LINE L1 -4 7692 7524 8 1961 186 43 0 0 chr1 180397547 180397570 -16797862 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1961 1232 187 172 42 chr1 180397570 180397835 -16797597 - Lx7 LINE L1 -173 7523 7239 8 1961 403 238 68 20 chr1 180398122 180398268 -16797164 + L1MA9 LINE L1 6124 6276 -36 8 1961 241 182 156 0 chr1 180398261 180398338 -16797094 + L1MA9 LINE L1 6214 6302 -10 8 1961 33 43 0 0 chr1 180398418 180398465 -16796967 + AT_rich Low_complexity Low_complexity 1 47 0 8 1961 336 342 6 36 chr1 180398682 180398849 -16796583 - RSINE1 SINE B4 -1 164 3 8 1961 534 146 0 0 chr1 180398884 180398980 -16796452 + (TG)n Simple_repeat Simple_repeat 2 97 0 8 1961 376 283 26 9 chr1 180399014 180399128 -16796304 + PB1D10 SINE Alu 2 117 0 8 1961 1440 151 118 153 chr1 180399199 180399597 -16795835 + ORR1C2 LTR MaLR 1 384 0 8 1961 482 184 99 18 chr1 180399985 180400096 -16795336 + RSINE1 SINE B4 46 165 0 8 1961 864 163 177 82 chr1 180400156 180400450 -16794982 - Lx9 LINE L1 0 7644 7323 8 1961 578 230 6 68 chr1 180400458 180400635 -16794797 - Lx7 LINE L1 -7 7689 7524 8 1961 450 0 0 0 chr1 180400642 180400692 -16794740 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 1961 3393 151 18 4 chr1 180400713 180401258 -16794174 - Lx7 LINE L1 -365 7331 6779 8 1961 933 184 0 18 chr1 180401243 180401414 -16794018 - Lx9 LINE L1 -301 7343 7176 8 1961 3593 13 2 0 chr1 180401634 180402029 -16793403 - MTA_Mm LTR MaLR 0 396 1 8 1961 9033 40 6 2 chr1 180402029 180403122 -16792310 - MTA_Mm-int LTR MaLR 0 1098 1 8 1961 3593 13 2 0 chr1 180403122 180403517 -16791915 - MTA_Mm LTR MaLR 0 396 1 8 1961 282 275 38 0 chr1 180404558 180404638 -16790794 + PB1D7 SINE Alu 1 83 -37 8 1961 252 258 15 0 chr1 180404754 180404820 -16790612 - B4A SINE B4 -196 96 30 8 1961 618 254 36 0 chr1 180405162 180405300 -16790132 + B1F SINE Alu 2 144 -5 8 1961 385 132 92 0 chr1 180406054 180406130 -16789302 - B2_Mm2 SINE B2 0 195 113 8 1961 355 203 348 57 chr1 180406258 180406399 -16789033 - B3A SINE B2 -16 182 1 8 1961 1227 54 0 0 chr1 180406674 180406821 -16788611 - B1_Mus1 SINE Alu 0 148 2 8 1961 400 336 20 14 chr1 180407647 180407795 -16787637 - B1F SINE Alu 0 149 1 8 1961 1603 168 64 98 chr1 180408515 180408593 -16786839 - ORR1B2 LTR MaLR 0 367 325 8 1961 838 86 26 0 chr1 180408593 180408710 -16786722 - PB1D9 SINE Alu 0 120 1 8 1961 1603 168 64 98 chr1 180408710 180409007 -16786425 - ORR1B2 LTR MaLR -43 324 5 8 1961 261 0 0 0 chr1 180409297 180409326 -16786106 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 8 1961 867 148 0 22 chr1 180409326 180409464 -16785968 - B1_Mus1 SINE Alu -13 135 1 8 1961 256 255 106 0 chr1 180409793 180409887 -16785545 - MIR SINE MIR -67 195 92 8 1961 1683 139 130 6 chr1 180410021 180410360 -16785072 - RMER17B LTR ERVK 0 958 578 8 1961 744 80 26 0 chr1 180410343 180410456 -16784976 - RMER17B LTR ERVK -842 116 1 8 1961 214 195 0 0 chr1 180412544 180412585 -16782847 + B4A SINE B4 3 43 -249 8 1961 230 269 0 97 chr1 180413863 180413966 -16781466 - B1F2 SINE Alu -27 93 1 9 1961 216 0 0 0 chr1 180414174 180414198 -16781234 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1961 290 270 34 0 chr1 180414448 180414537 -16780895 - MIR SINE MIR -25 237 146 9 1961 266 392 15 0 chr1 180414693 180414823 -16780609 + MER94 DNA AcHobo 1 132 -2 9 1961 853 249 111 19 chr1 180414864 180415126 -16780306 + B4A SINE B4 2 287 -5 9 1961 219 324 0 0 chr1 180415874 180415942 -16779490 - ID4_ SINE ID -10 73 6 9 1961 194 33 67 0 chr1 180417227 180417257 -16778175 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 9 1961 207 0 0 0 chr1 180417336 180417359 -16778073 + (CTGGGG)n Simple_repeat Simple_repeat 1 23 0 9 1961 492 229 157 35 chr1 180417364 180417536 -16777896 + ID_B1 SINE B4 32 224 0 9 1961 626 321 67 87 chr1 180417619 180418158 -16777274 - Charlie7 DNA MER1_type -1763 849 322 9 1961 471 196 48 19 chr1 180418972 180419076 -16776356 - PB1D10 SINE Alu -6 111 5 9 1961 198 335 54 36 chr1 180419801 180419968 -16775464 + MIRb SINE MIR 25 194 -74 9 1961 182 335 154 35 chr1 180420220 180420421 -16775011 - L2a LINE L2 -91 3335 3111 9 1961 629 293 108 25 chr1 180421743 180422068 -16773364 - ORR1E LTR MaLR -2 357 6 9 1961 3243 140 167 87 chr1 180423678 180424497 -16770935 + RMER19B LTR ERVK 1 885 -17 9 1961 816 42 109 0 chr1 180424496 180424615 -16770817 + B1_Mus1 SINE Alu 6 137 -11 9 1961 332 22 22 0 chr1 180424615 180424660 -16770772 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 9 1961 192 77 0 0 chr1 180424818 180424844 -16770588 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 9 1961 662 168 16 0 chr1 180425217 180425342 -16770090 - Lx4A LINE L1 -3 7055 6929 9 1961 306 148 0 0 chr1 180425391 180425445 -16769987 + (T)n Simple_repeat Simple_repeat 1 54 0 9 1961 289 211 35 0 chr1 180425464 180425521 -16769911 - B1_Mur1 SINE Alu -17 132 74 9 1961 21 36 0 0 chr1 180425537 180425565 -16769867 + AT_rich Low_complexity Low_complexity 1 28 0 9 1961 21 100 0 0 chr1 180426010 180426080 -16769352 + AT_rich Low_complexity Low_complexity 1 70 0 9 1961 564 127 195 0 chr1 180426088 180426206 -16769226 + B1_Mus1 SINE Alu 6 146 -2 9 1961 293 47 0 23 chr1 180426215 180426259 -16769173 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 9 1961 908 236 48 14 chr1 180426429 180426743 -16768689 - ORR1D1 LTR MaLR -2 357 18 9 1961 2495 159 160 6 chr1 180427487 180427994 -16767438 - RMER4B LTR ERVK 0 585 1 9 1961 41579 12 1 6 chr1 180427997 180434249 -16761183 - L1Md_A LINE L1 -1 6581 364 9 1961 486 276 144 48 chr1 180434609 180434921 -16760511 - ORR1E LTR MaLR -17 342 1 9 1961 247 268 14 0 chr1 180435738 180435809 -16759623 - ID4 SINE ID -11 72 1 9 1961 701 179 17 0 chr1 180436113 180436230 -16759202 - PB1D9 SINE Alu 0 120 2 9 1961 309 271 0 0 chr1 180436251 180436321 -16759111 - tRNA-Ala-GCA tRNA tRNA -5 70 1 9 1961 459 0 0 0 chr1 180436341 180436392 -16759040 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1961 215 306 28 0 chr1 180436991 180437063 -16758369 - ID4 SINE ID -3 80 7 9 1961 3700 182 129 16 chr1 180437343 180438349 -16757083 + Lx2B LINE L1 5839 6986 -11 9 1961 219 139 0 0 chr1 180438359 180438395 -16757037 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1961 342 0 0 0 chr1 180438496 180438534 -16756898 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 1961 596 192 125 2 chr1 180438545 180438697 -16756735 - B3A SINE B2 -29 166 1 9 1961 1810 31 4 34 chr1 180439027 180439262 -16756170 + L1Md_F2 LINE L1 6354 6581 -1 9 1961 346 260 14 0 chr1 180439295 180439368 -16756064 + ID4 SINE ID 3 76 -7 9 1961 697 186 0 60 chr1 180439465 180439614 -16755818 - B1_Mur4 SINE Alu -1 149 10 9 1961 390 255 18 146 chr1 180439466 180439631 -16755801 - B4 SINE B4 -69 223 80 9 1961 596 252 78 19 chr1 180439731 180439885 -16755547 - B3A SINE B2 -35 163 1 9 1961 879 277 24 24 chr1 180439885 180440114 -16755318 - B4 SINE B4 -61 231 3 9 1961 794 229 43 15 chr1 180440276 180440442 -16754990 - L1MA4 LINE L1 -336 5964 5795 9 1961 387 0 0 0 chr1 180440442 180440485 -16754947 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1961 3435 45 0 2 chr1 180440494 180440895 -16754537 - MTB LTR MaLR 0 400 1 9 1961 794 245 35 74 chr1 180440895 180441081 -16754351 - L1MA4 LINE L1 -518 5782 5590 9 1961 241 304 98 71 chr1 180441120 180441417 -16754015 + ORR1C2 LTR MaLR 80 384 0 9 1961 555 274 64 118 chr1 180441423 180441737 -16753695 + MLT1B LTR MaLR 76 372 -18 9 1961 218 306 27 40 chr1 180441846 180441921 -16753511 - L2 LINE L2 -595 2824 2751 9 1961 543 323 101 26 chr1 180441944 180442510 -16752922 - L2 LINE L2 -739 2680 2073 9 1961 261 314 0 2 chr1 180443027 180443099 -16752333 - ID4_ SINE ID -11 72 2 9 1961 213 267 0 0 chr1 180443105 180443165 -16752267 - PB1D10 SINE Alu -15 102 43 9 1961 321 310 181 0 chr1 180443914 180444085 -16751347 - MLT1D LTR MaLR -24 481 280 9 1961 450 53 0 0 chr1 180444157 180444214 -16751218 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 9 1961 201 39 0 0 chr1 180444322 180444348 -16751084 + (G)n Simple_repeat Simple_repeat 1 26 0 9 1961 275 170 38 0 chr1 180444524 180444577 -16750855 + L1MB1 LINE L1 5843 5897 -292 9 1961 193 75 24 24 chr1 180444640 180444681 -16750751 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1961 1253 257 89 9 chr1 180444703 180445041 -16750391 - MTE2a LTR MaLR 0 379 15 9 1961 911 298 70 52 chr1 180445540 180445827 -16749605 - B4 SINE B4 0 292 1 9 1961 235 361 27 14 chr1 180445977 180446050 -16749382 + ID4 SINE ID 3 76 -7 9 1961 506 107 198 0 chr1 180446490 180446611 -16748821 + Lx4A LINE L1 6913 7057 -1 9 1961 23 0 0 0 chr1 180446611 180446634 -16748798 + AT_rich Low_complexity Low_complexity 1 23 0 9 1961 225 0 0 0 chr1 180446637 180446662 -16748770 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 9 1961 680 174 53 46 chr1 180446665 180446816 -16748616 - RSINE1 SINE B4 0 165 14 9 1961 442 226 39 10 chr1 180447089 180447192 -16748240 + PB1 SINE Alu 1 106 -21 9 1961 440 139 13 0 chr1 180447199 180447278 -16748154 + GA-rich Low_complexity Low_complexity 1 80 0 9 1961 969 73 0 48 chr1 180447278 180447465 -16747967 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 9 1961 351 307 10 0 chr1 180447724 180447825 -16747607 + CT-rich Low_complexity Low_complexity 2 103 0 9 1961 225 0 0 0 chr1 180448312 180448337 -16747095 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1961 642 205 6 93 chr1 180448337 180448498 -16746934 - B1_Mur1 SINE Alu -2 147 1 9 1961 326 279 7 0 chr1 180448618 180448765 -16746667 + (CA)n Simple_repeat Simple_repeat 1 148 0 9 1961 1008 178 0 4 chr1 180448931 180449176 -16746256 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 9 1961 872 312 61 27 chr1 180450371 180450751 -16744681 - L1MB7 LINE L1 -246 5938 5543 9 1961 2828 101 22 32 chr1 180450751 180451161 -16744271 + MTB_Mm LTR MaLR 2 407 0 9 1961 872 312 61 27 chr1 180451161 180451334 -16744098 - L1MB7 LINE L1 -642 5542 5367 9 1961 891 28 0 0 chr1 180451873 180451979 -16743453 + (TCCC)n Simple_repeat Simple_repeat 3 108 0 9 1961 272 273 148 0 chr1 180452001 180452089 -16743343 - ID_B1 SINE B4 -38 186 86 9 1961 235 319 28 0 chr1 180452399 180452471 -16742961 + ID4_ SINE ID 2 75 -8 9 1961 1020 124 0 0 chr1 180454264 180454442 -16740990 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1961 2170 143 6 8 chr1 180454459 180454818 -16740614 - RLTR15 LTR ERVK -1 358 1 9 1961 520 296 109 66 chr1 180454831 180455020 -16740412 + L1MEf LINE L1 956 1151 -5049 9 1961 1339 77 44 0 chr1 180455020 180455203 -16740229 + B2_Mm1t SINE B2 2 192 -1 9 1961 520 296 109 66 chr1 180455203 180455224 -16740208 + L1MEf LINE L1 1152 1168 -5032 9 1961 1613 82 0 13 chr1 180455224 180455448 -16739984 + L1Md_F2 LINE L1 6348 6568 -14 9 1961 520 296 109 66 chr1 180455448 180455482 -16739950 + L1MEf LINE L1 1169 1194 -5006 9 1961 1438 218 76 38 chr1 180455482 180455826 -16739606 + ORR1E LTR MaLR 3 359 0 9 1961 520 296 109 66 chr1 180455826 180456140 -16739292 + L1MEf LINE L1 1195 1540 -4660 9 1961 580 188 168 134 chr1 180456144 180456353 -16739079 + B3 SINE B2 1 216 0 9 1961 303 93 0 0 chr1 180456355 180456398 -16739034 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 9 1961 263 286 14 0 chr1 180456417 180456487 -16738945 + L1MEf LINE L1 1560 1630 -4570 9 1961 225 0 0 0 chr1 180456498 180456523 -16738909 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 9 1961 312 48 0 0 chr1 180456528 180456570 -16738862 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 9 1961 365 312 90 67 chr1 180456573 180456872 -16738560 + L1MEf LINE L1 1647 1952 -4248 9 1961 425 286 97 70 chr1 180456956 180456994 -16738438 + L1ME3 LINE L1 5883 5920 -242 9 1961 207 0 0 0 chr1 180456994 180457017 -16738415 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1961 425 286 97 70 chr1 180457017 180457237 -16738195 + L1ME3 LINE L1 5921 6147 -15 9 1961 237 93 56 0 chr1 180457237 180457291 -16738141 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 1961 322 173 0 13 chr1 180457298 180457374 -16738058 + L1ME2z LINE L1 6086 6160 -284 9 1961 26 50 0 0 chr1 180459011 180459051 -16736381 + GC_rich Low_complexity Low_complexity 1 40 0 9 1961 648 212 152 30 chr1 180465082 180465247 -16730185 + B3 SINE B2 1 185 -31 9 1961 1088 291 80 28 chr1 180465258 180465682 -16729750 - Lx8 LINE L1 -17 7456 7011 9 1961 394 356 68 50 chr1 180466875 180467153 -16728279 + L1M5 LINE L1 4731 5013 -1133 9 1961 589 297 79 98 chr1 180467281 180467546 -16727886 - B4A SINE B4 -22 270 11 9 1961 198 0 0 0 chr1 180467578 180467600 -16727832 + (TAA)n Simple_repeat Simple_repeat 1 22 0 9 1961 826 173 48 0 chr1 180467610 180467769 -16727663 - B2_Mm2 SINE B2 -17 199 2 9 1961 23 68 0 0 chr1 180467972 180468016 -16727416 + AT_rich Low_complexity Low_complexity 1 44 0 9 1961 180 0 0 0 chr1 180468239 180468259 -16727173 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 1961 378 0 0 0 chr1 180468260 180468302 -16727130 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1961 3144 113 0 7 chr1 180469001 180469437 -16725995 - RLTR10C LTR ERVK -3 433 1 1 1961 187 326 153 11 chr1 180469447 180469636 -16725796 - L2 LINE L2 -1240 2179 1964 1 1961 582 15 0 0 chr1 180469820 180469887 -16725545 + (TTAGGG)n Simple_repeat Simple_repeat 3 69 0 1 1961 317 308 19 0 chr1 180471437 180471544 -16723888 + CT-rich Low_complexity Low_complexity 1 109 0 1 1961 243 316 13 0 chr1 180471807 180471886 -16723546 - ID4_ SINE ID -2 81 2 1 1961 198 0 0 0 chr1 180471898 180471920 -16723512 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1961 334 269 25 31 chr1 180472984 180473145 -16722287 + (TATG)n Simple_repeat Simple_repeat 1 160 0 1 1961 196 176 29 19 chr1 180473171 180473275 -16722157 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1961 263 165 23 23 chr1 180473327 180473414 -16722018 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1961 552 56 0 0 chr1 180473630 180473702 -16721730 + (TATG)n Simple_repeat Simple_repeat 3 74 0 1 1961 2264 147 11 5 chr1 180474816 180475192 -16720240 + ORR1C1 LTR MaLR 1 378 0 1 1961 316 263 0 0 chr1 180475737 180475813 -16719619 + ID4 SINE ID 2 77 -6 1 1961 181 172 0 0 chr1 180476391 180476420 -16719012 - L2a LINE L2 -17 3409 3381 1 1961 187 320 72 0 chr1 180476435 180476532 -16718900 - MIRc SINE MIR -103 165 62 1 1961 186 270 194 29 chr1 180476643 180476746 -16718686 - MIRb SINE MIR -83 185 66 1 1961 252 0 0 0 chr1 180477480 180477508 -16717924 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1961 491 348 70 63 chr1 180477778 180478048 -16717384 - ORR1E LTR MaLR 0 359 88 1 1961 274 279 57 29 chr1 180478110 180478180 -16717252 - ORR1E LTR MaLR -284 75 4 1 1961 217 286 28 14 chr1 180479071 180479142 -16716290 + ID2 SINE ID 12 83 0 1 1961 800 98 0 16 chr1 180479142 180479210 -16716222 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 1 1961 1149 123 0 0 chr1 180479210 180479389 -16716043 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 1 1961 800 98 0 16 chr1 180479389 180479445 -16715987 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1 1961 461 231 19 28 chr1 180481148 180481255 -16714177 + PB1D10 SINE Alu 6 111 -6 1 1961 708 248 71 91 chr1 180481558 180481855 -16713577 - B4 SINE B4 0 292 2 1 1961 281 135 19 0 chr1 180482904 180482956 -16712476 + GA-rich Low_complexity Low_complexity 2 54 0 1 1961 243 274 144 19 chr1 180482956 180483060 -16712372 - ORR1E LTR MaLR -221 138 22 1 1961 207 88 0 0 chr1 180484028 180484062 -16711370 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 1 1961 385 309 27 22 chr1 180484884 180485069 -16710363 - L1M4 LINE L1 -452 5732 5547 1 1961 261 286 62 62 chr1 180485100 180485279 -16710153 - L1M4 LINE L1 -718 5462 5284 1 1961 259 224 56 12 chr1 180485323 180485420 -16710012 - L1MC LINE L1 -965 5181 5082 1 1961 297 0 0 0 chr1 180485591 180485624 -16709808 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1961 486 0 0 0 chr1 180485626 180485680 -16709752 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1961 965 271 35 55 chr1 180485691 180485980 -16709452 - B4 SINE B4 0 292 10 1 245 598 11 0 52 chr1 180486064 180486160 -16709272 + (CCAA)n Simple_repeat Simple_repeat 1 91 0 1 1962 297 131 0 0 chr1 180486161 180486222 -16709210 + (CAAAC)n Simple_repeat Simple_repeat 5 65 0 1 1962 307 274 20 100 chr1 180487439 180487589 -16707843 - MTD LTR MaLR -1 418 281 1 1962 934 310 98 97 chr1 180487790 180488500 -16706932 - MTE-int LTR MaLR -106 1474 668 1 1962 439 161 0 147 chr1 180488547 180488649 -16706783 - ID_B1 SINE B4 -2 222 136 1 1962 1508 183 89 31 chr1 180488618 180488945 -16706487 + ORR1D1 LTR MaLR 29 374 0 1 1962 407 138 11 0 chr1 180489652 180489739 -16705693 + (TCTCCC)n Simple_repeat Simple_repeat 1 88 0 1 1962 831 268 11 6 chr1 180489745 180489925 -16705507 - B3 SINE B2 -33 183 3 1 1962 248 230 198 64 chr1 180490104 180490276 -16705156 + L1M3 LINE L1 5660 5854 -329 1 1962 1136 183 44 15 chr1 180490304 180490509 -16704923 - B3 SINE B2 -4 212 2 1 1962 599 266 27 20 chr1 180490534 180490710 -16704722 - ID_B1 SINE B4 -39 253 82 1 1962 350 345 70 63 chr1 180490860 180491191 -16704241 - ORR1E LTR MaLR -6 353 21 1 1962 510 228 9 17 chr1 180491306 180491422 -16704010 - PB1D10 SINE Alu -2 115 1 1 1962 607 146 0 10 chr1 180491528 180491625 -16703807 - B1_Mur2 SINE Alu -7 142 47 1 1962 430 104 41 10 chr1 180491759 180491856 -16703576 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1962 1133 268 100 12 chr1 180492028 180492357 -16703075 - MTE2b LTR MaLR -4 375 18 1 1962 320 237 90 69 chr1 180492637 180492782 -16702650 - B1_Mur2 SINE Alu -1 148 1 1 1962 516 16 0 0 chr1 180493166 180493227 -16702205 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1962 795 260 48 5 chr1 180493927 180494136 -16701296 + ID_B1 SINE B4 1 218 -6 1 1962 403 300 34 41 chr1 180494141 180494287 -16701145 - B4 SINE B4 -24 268 124 1 1962 194 231 15 0 chr1 180494313 180494378 -16701054 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1962 335 300 0 0 chr1 180494696 180494776 -16700656 - B4 SINE B4 -212 80 1 1 1962 323 233 14 0 chr1 180495279 180495352 -16700080 + ID4_ SINE ID 2 75 -8 1 1962 190 318 0 87 chr1 180495452 180495521 -16699911 - L2b LINE L2 -42 3333 3271 1 1962 686 274 40 31 chr1 180495552 180495778 -16699654 + MIR SINE MIR 32 259 -3 1 1962 21 0 0 0 chr1 180495800 180495821 -16699611 + AT_rich Low_complexity Low_complexity 1 21 0 1 1962 421 254 18 44 chr1 180496265 180496379 -16699053 - PB1D10 SINE Alu -1 116 4 1 1962 874 154 22 4 chr1 180496753 180496988 -16698444 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 1 1962 250 295 33 143 chr1 180498429 180498520 -16696912 - RSINE1 SINE B4 -3 162 82 1 1962 226 220 0 20 chr1 180498570 180498621 -16696811 - RSINE1 SINE B4 -104 61 12 1 1962 705 155 0 0 chr1 180498628 180498776 -16696656 + (TG)n Simple_repeat Simple_repeat 1 148 0 1 1962 243 293 108 33 chr1 180499721 180499841 -16695591 + MIRm SINE MIR 15 143 -133 1 1962 227 339 0 0 chr1 180499842 180499898 -16695534 - ID SINE ID -146 78 23 1 1962 363 119 34 0 chr1 180499930 180499989 -16695443 - ID_B1 SINE B4 0 224 164 1 1962 211 219 0 0 chr1 180500011 180500052 -16695380 - ID_B1 SINE B4 -85 139 99 1 1962 385 230 112 22 chr1 180500058 180500147 -16695285 - PB1 SINE Alu 0 127 31 2 1962 492 324 39 44 chr1 180500876 180501105 -16694327 - MTE-int LTR MaLR -42 1538 1311 3 1962 613 159 24 0 chr1 180503156 180503326 -16692106 + (ACTG)n Simple_repeat Simple_repeat 4 177 0 4 1962 265 176 0 0 chr1 180503326 180503377 -16692055 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 5 1962 337 272 7 99 chr1 180504465 180504616 -16690816 + L2c LINE L2 3235 3371 -16 6 1962 251 245 42 32 chr1 180504657 180504736 -16690696 - MTEa LTR MaLR -21 358 281 7 1962 3859 99 134 2 chr1 180505322 180505928 -16689504 - RMER6C LTR ERVK 0 690 5 8 1962 299 297 178 0 chr1 180506392 180506510 -16688922 + ID_B1 SINE B4 80 218 -6 9 1962 467 171 0 22 chr1 180506860 180506950 -16688482 + MLT1A1 LTR MaLR 316 403 -5 1 1962 854 248 143 19 chr1 180507514 180507773 -16687659 - B4A SINE B4 0 292 2 1 1962 907 285 70 49 chr1 180508338 180508666 -16686766 + MTE2b LTR MaLR 1 335 -44 1 1962 675 257 28 22 chr1 180508691 180508870 -16686562 - B3A SINE B2 -18 180 1 1 1962 470 269 91 39 chr1 180510550 180510791 -16684641 + MTEb LTR MaLR 105 379 0 1 1962 334 158 0 0 chr1 180511378 180511435 -16683997 - B4A SINE B4 -233 59 3 1 1962 366 319 93 100 chr1 180511566 180511876 -16683556 - ORR1D2 LTR MaLR 0 370 63 1 1962 234 275 12 24 chr1 180512156 180512238 -16683194 - ID4 SINE ID -2 81 1 1 1962 384 77 0 0 chr1 180513341 180513393 -16682039 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1962 184 228 0 28 chr1 180513430 180513488 -16681944 - MIRc SINE MIR -111 157 101 1 1962 328 200 26 13 chr1 180513703 180513779 -16681653 - ID4_ SINE ID -6 77 1 2 1962 218 303 13 13 chr1 180514515 180514592 -16680840 - ID2 SINE ID -5 78 2 2 1962 953 255 5 5 chr1 180515140 180515353 -16680079 + ID_B1 SINE B4 2 214 -10 2 1962 186 167 0 0 chr1 180515353 180515389 -16680043 + (CAAT)n Simple_repeat Simple_repeat 4 39 0 2 1962 450 171 13 0 chr1 180516614 180516690 -16678742 - ID_B1 SINE B4 0 224 148 2 1962 270 0 0 0 chr1 180516692 180516722 -16678710 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1962 676 279 2 71 chr1 180516726 180516932 -16678500 - B3A SINE B2 0 216 13 2 1962 440 241 110 22 chr1 180517577 180517713 -16677719 - B1_Mur2 SINE Alu 0 149 2 2 1962 247 280 185 9 chr1 180517817 180517925 -16677507 + MER20 DNA MER1_type 1 127 -92 2 1962 456 289 169 42 chr1 180518021 180518353 -16677079 - L1ME2z LINE L1 -166 6278 5905 2 1962 450 0 0 0 chr1 180518430 180518480 -16676952 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 3 1962 603 0 0 0 chr1 180518528 180518595 -16676837 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 3 1962 307 215 45 15 chr1 180518642 180518708 -16676724 - B2_Mm2 SINE B2 -127 68 1 3 1962 384 290 66 46 chr1 180518712 180518864 -16676568 - MER2 DNA MER2_type -173 172 18 3 1962 409 327 132 56 chr1 180518918 180519184 -16676248 + Charlie1a DNA MER1_type 3 288 -1167 3 1962 1461 286 141 9 chr1 180519209 180519854 -16675578 + Charlie1a DNA MER1_type 726 1455 0 3 1962 472 309 59 1 chr1 180519879 180520122 -16675310 - L1ME2z LINE L1 -593 5851 5594 2 1962 198 0 0 0 chr1 180520258 180520280 -16675152 + (C)n Simple_repeat Simple_repeat 1 22 0 3 1962 236 232 145 0 chr1 180520337 180520406 -16675026 + ID4_ SINE ID 1 79 -4 3 1962 496 293 94 53 chr1 180520947 180521246 -16674186 - MER121 Unknown Unknown -91 321 11 3 1962 315 0 0 0 chr1 180522344 180522379 -16673053 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1962 274 269 19 0 chr1 180522395 180522461 -16672971 - ID4 SINE ID -6 77 10 3 1962 265 349 45 45 chr1 180522704 180522881 -16672551 - MER117 DNA MER1_type -19 178 2 4 1962 1141 232 69 8 chr1 180524534 180524795 -16670637 - B4A SINE B4 -14 278 2 4 1962 560 355 122 20 chr1 180525182 180525639 -16669793 - L1M5 LINE L1 -479 5761 5258 4 1962 21 0 0 0 chr1 180525712 180525733 -16669699 + AT_rich Low_complexity Low_complexity 1 21 0 4 1962 796 244 47 0 chr1 180525801 180525973 -16669459 - B3A SINE B2 -18 180 1 4 1962 749 329 165 15 chr1 180525975 180526337 -16669095 - L1M5 LINE L1 -1946 4200 3783 4 1962 360 262 97 0 chr1 180526337 180526440 -16668992 + PB1D10 SINE Alu 5 117 0 4 1962 749 329 165 15 chr1 180526440 180526468 -16668964 - L1M5 LINE L1 -2364 3782 3742 4 1962 1405 217 159 0 chr1 180526468 180526827 -16668605 - MTD LTR MaLR 0 419 4 4 1962 749 329 165 15 chr1 180526827 180527028 -16668404 - L1M5 LINE L1 -2405 3741 3521 4 1962 267 194 86 0 chr1 180527030 180527123 -16668309 + (TTAA)n Simple_repeat Simple_repeat 1 101 0 4 1962 508 262 10 10 chr1 180527129 180527233 -16668199 - PB1D10 SINE Alu -8 109 6 4 1962 1078 198 5 19 chr1 180527334 180527550 -16667882 - B3 SINE B2 0 216 4 4 1962 662 197 15 38 chr1 180527683 180527698 -16667734 - B1_Mur3 SINE Alu 0 149 139 5 1962 182 37 0 36 chr1 180527698 180527726 -16667706 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1962 662 197 15 38 chr1 180527726 180527842 -16667590 - B1_Mur3 SINE Alu -11 138 21 5 1962 210 143 40 20 chr1 180528580 180528630 -16666802 + CT-rich Low_complexity Low_complexity 5 55 0 5 1962 377 283 0 0 chr1 180528632 180528721 -16666711 - ID4_ SINE ID -54 98 10 5 1962 255 373 0 0 chr1 180528947 180529014 -16666418 + ID4_ SINE ID 2 68 -15 5 1962 273 119 0 0 chr1 180529014 180529056 -16666376 + (ATG)n Simple_repeat Simple_repeat 2 43 0 5 1962 535 234 148 20 chr1 180529427 180529540 -16665892 + Lx7 LINE L1 7197 7318 -378 5 1962 225 0 0 0 chr1 180529540 180529565 -16665867 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1962 351 0 0 0 chr1 180529565 180529603 -16665829 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1962 535 234 148 20 chr1 180529603 180529684 -16665748 + Lx7 LINE L1 7319 7416 -280 5 1962 298 151 0 19 chr1 180529731 180529785 -16665647 + Lx7 LINE L1 7628 7680 -16 5 1962 186 231 58 0 chr1 180531252 180531304 -16664128 + MIR SINE MIR 86 140 -122 5 1962 294 227 0 11 chr1 180532296 180532385 -16663047 - Lx9 LINE L1 -25 7619 7532 6 1962 605 128 10 0 chr1 180532401 180532503 -16662929 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 6 1962 207 69 0 0 chr1 180533521 180533550 -16661882 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1962 766 231 101 18 chr1 180533599 180533874 -16661558 + MER2 DNA MER2_type 2 318 -27 6 1962 285 29 0 0 chr1 180534062 180534096 -16661336 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1962 378 0 0 0 chr1 180534096 180534137 -16661295 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1962 866 186 64 29 chr1 180534232 180534430 -16661002 - B3 SINE B2 -4 212 13 6 1962 862 231 209 9 chr1 180534975 180535297 -16660135 + MTD LTR MaLR 18 406 -13 6 1962 201 39 0 0 chr1 180535636 180535662 -16659770 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 6 1962 302 331 8 16 chr1 180536441 180536567 -16658865 + L1M5 LINE L1 4567 4691 -1455 6 1962 268 325 28 47 chr1 180536630 180536843 -16658589 + L1M5 LINE L1 4863 5071 -1075 6 1962 982 93 0 30 chr1 180537005 180537171 -16658261 - Lx LINE L1 -4 6650 6490 7 1962 2016 208 45 21 chr1 180537181 180537711 -16657721 - L1M4c LINE L1 -2130 4246 3704 7 1962 638 278 90 23 chr1 180537820 180538165 -16657267 - L1M4c LINE L1 -4679 1799 1279 7 1962 590 218 25 107 chr1 180538169 180538328 -16657104 + RMER30 DNA MER1_type 8 153 -49 7 1962 694 256 63 44 chr1 180538346 180538746 -16656686 - L1M4c LINE L1 -4650 2003 1327 7 1962 405 123 0 0 chr1 180538771 180538836 -16656596 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1962 209 286 105 85 chr1 180538840 180538993 -16656439 - L3 LINE CR1 -228 4261 4106 7 1962 273 315 21 21 chr1 180539227 180539321 -16656111 - L1M4c LINE L1 -5709 944 851 7 1962 624 323 123 21 chr1 180539425 180539710 -16655722 + MLT1C LTR MaLR 154 467 0 7 1962 465 182 135 9 chr1 180540031 180540142 -16655290 + RSINE1 SINE B4 2 126 -39 7 1962 336 304 34 43 chr1 180541221 180541338 -16654094 + PB1D10 SINE Alu 2 117 0 7 1962 1040 268 28 42 chr1 180541398 180541682 -16653750 + B4 SINE B4 13 292 0 7 1962 212 288 15 15 chr1 180542592 180542659 -16652773 + CT-rich Low_complexity Low_complexity 3 69 0 8 1962 349 302 9 62 chr1 180542675 180542763 -16652669 + B4A SINE B4 183 269 -23 8 1962 452 93 13 0 chr1 180542763 180542838 -16652594 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 1962 349 302 9 62 chr1 180542838 180542862 -16652570 + B4A SINE B4 270 289 -3 8 1962 234 301 102 70 chr1 180543308 180543334 -16652098 - B2_Mm1t SINE B2 0 193 145 8 1962 642 286 25 6 chr1 180543334 180543360 -16652072 - RSINE1 SINE B4 0 165 140 8 1962 212 86 29 0 chr1 180543360 180543395 -16652037 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1962 234 301 102 70 chr1 180543395 180543528 -16651904 - B2_Mm1t SINE B2 -49 144 2 8 1962 4276 117 28 47 chr1 180543584 180544349 -16651083 - RMER17A LTR ERVK -1 750 1 8 1962 469 272 203 66 chr1 180544367 180544623 -16650809 - B4 SINE B4 0 292 2 8 1962 183 243 0 0 chr1 180545037 180545074 -16650358 + L4 LINE RTE 1838 1874 -155 8 1962 261 0 0 0 chr1 180545382 180545411 -16650021 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1962 441 121 0 0 chr1 180545411 180545494 -16649938 + (GA)n Simple_repeat Simple_repeat 2 84 0 9 1962 958 245 19 0 chr1 180545661 180545873 -16649559 + B3 SINE B2 1 216 0 9 1962 480 316 81 70 chr1 180546143 180546494 -16648938 + ORR1E LTR MaLR 4 370 -4 9 1962 243 0 0 0 chr1 180546733 180546760 -16648672 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1962 1185 80 0 0 chr1 180547086 180547248 -16648184 + (TC)n Simple_repeat Simple_repeat 1 162 0 9 1962 200 312 161 54 chr1 180547475 180547757 -16647675 + L2c LINE L2 3078 3375 0 9 1962 278 218 78 0 chr1 180547805 180547885 -16647547 - MLT1H LTR MaLR 0 591 481 9 1962 462 282 19 84 chr1 180547948 180548103 -16647329 - MLT1H LTR MaLR -221 328 184 9 1962 192 227 174 10 chr1 180549735 180549833 -16645599 - L3 LINE CR1 -3544 945 832 9 1962 195 69 0 0 chr1 180551037 180551066 -16644366 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 9 1962 483 194 11 21 chr1 180551164 180551259 -16644173 - RSINE1 SINE B4 -68 97 4 9 1962 659 271 132 36 chr1 180551830 180552079 -16643353 - B4 SINE B4 -3 289 17 1 1962 839 174 14 7 chr1 180552612 180552757 -16642675 + B1_Mur4 SINE Alu 2 147 -3 1 1962 198 0 0 0 chr1 180552759 180552781 -16642651 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1962 314 301 71 31 chr1 180552854 180552981 -16642451 - MIRc SINE MIR -116 152 21 1 1962 522 46 0 0 chr1 180552982 180553047 -16642385 + (TTATG)n Simple_repeat Simple_repeat 1 65 0 1 1962 824 269 135 30 chr1 180553451 180553877 -16641555 + L1MB3 LINE L1 5690 6162 -21 1 1962 781 265 95 33 chr1 180554779 180555052 -16640380 + B4A SINE B4 1 290 -2 1 1962 859 238 44 0 chr1 180555105 180555311 -16640121 - ID_B1 SINE B4 -8 216 2 1 1962 202 386 23 8 chr1 180555359 180555492 -16639940 - MIRc SINE MIR -132 136 2 1 1962 348 342 0 0 chr1 180555643 180555754 -16639678 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1962 969 203 5 57 chr1 180555810 180556019 -16639413 - B3 SINE B2 0 216 19 1 1962 452 261 130 21 chr1 180556037 180556229 -16639203 - B4 SINE B4 -68 224 12 1 1962 629 254 75 46 chr1 180556725 180557006 -16638426 - B4A SINE B4 -1 291 3 1 1962 254 306 61 10 chr1 180557987 180558086 -16637346 + MIR SINE MIR 38 141 -67 1 1962 841 260 49 146 chr1 180558648 180558812 -16636620 - MTE2a LTR MaLR -9 370 198 1 1962 1943 129 62 20 chr1 180558812 180559153 -16636279 - RLTR15 LTR ERVK 0 359 5 1 1962 841 260 49 146 chr1 180559153 180559398 -16636034 - MTE2a LTR MaLR -182 197 1 1 1962 186 118 0 0 chr1 180559895 180559929 -16635503 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 1 1962 387 0 0 0 chr1 180559959 180560002 -16635430 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1962 852 258 41 45 chr1 180560004 180560296 -16635136 - B4A SINE B4 0 292 2 1 1962 216 0 0 0 chr1 180560454 180560478 -16634954 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 1962 496 310 138 25 chr1 180560863 180561190 -16634242 + Arthur1B DNA Tip100 56 419 -806 1 1962 693 272 161 20 chr1 180561230 180561620 -16633812 + L1MB8 LINE L1 5729 6173 -5 1 1962 1053 301 99 65 chr1 180562583 180563277 -16632155 - Lx9 LINE L1 -46 7598 6881 1 1962 483 100 0 0 chr1 180563404 180563474 -16631958 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 1 1962 751 287 11 17 chr1 180563966 180564143 -16631289 - B3A SINE B2 -16 182 7 1 1962 21 0 0 0 chr1 180565707 180565728 -16629704 + AT_rich Low_complexity Low_complexity 1 21 0 1 1962 306 0 0 0 chr1 180566030 180566064 -16629368 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1962 492 18 0 0 chr1 180566064 180566120 -16629312 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1962 690 261 81 70 chr1 180566442 180566726 -16628706 - B4A SINE B4 -1 291 5 1 1962 1235 80 0 18 chr1 180567035 180567201 -16628231 + U1 snRNA snRNA 1 163 -2 1 1962 1288 113 16 5 chr1 180567222 180567409 -16628023 + B2_Mm2 SINE B2 1 189 -6 1 1962 375 210 149 16 chr1 180567776 180567897 -16627535 - Lx5 LINE L1 -1 7049 6913 1 1962 404 302 68 0 chr1 180568315 180568477 -16626955 + L1MB3 LINE L1 6008 6180 -3 1 1962 180 0 0 0 chr1 180568489 180568509 -16626923 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1962 180 277 43 0 chr1 180569020 180569067 -16626365 + MIR3 SINE MIR 114 162 -46 1 1962 1065 51 0 81 chr1 180570740 180570889 -16624543 + B1_Mus1 SINE Alu 1 137 -11 1 1962 282 29 0 0 chr1 180570889 180570924 -16624508 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1 1962 408 155 0 0 chr1 180571639 180571710 -16623722 + CT-rich Low_complexity Low_complexity 2 72 0 1 1962 714 216 13 13 chr1 180572163 180572322 -16623110 - L1MC2 LINE L1 -112 6232 6074 1 1962 262 291 61 43 chr1 180572430 180572545 -16622887 + B3 SINE B2 94 210 -6 1 1962 193 245 68 136 chr1 180574148 180574266 -16621166 - MIR3 SINE MIR -11 197 88 1 1962 918 274 58 43 chr1 180575753 180576031 -16619401 - B4A SINE B4 -1 291 10 1 1962 309 316 128 101 chr1 180578289 180578634 -16616798 - ORR1E LTR MaLR -5 354 1 1 1962 306 0 0 0 chr1 180579007 180579041 -16616391 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1962 806 289 47 5 chr1 180579052 180579262 -16616170 + B4A SINE B4 10 228 -64 1 1962 559 346 68 30 chr1 180579262 180579527 -16615905 + RSINE1 SINE B4 2 290 -2 1 1962 284 0 28 0 chr1 180579671 180579707 -16615725 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1962 297 307 13 0 chr1 180579711 180579786 -16615646 + RSINE1 SINE B4 73 148 -17 1 1962 611 274 57 33 chr1 180579854 180580065 -16615367 - B3 SINE B2 0 216 1 1 1962 2494 49 0 7 chr1 180580159 180580469 -16614963 - L1Md_F2 LINE L1 -12 6570 6263 1 1962 620 299 81 0 chr1 180581453 180581650 -16613782 + L1MB3 LINE L1 5956 6168 -15 1 1962 692 222 0 6 chr1 180581817 180581998 -16613434 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1962 203 314 104 38 chr1 180583197 180583303 -16612129 - MIRb SINE MIR -92 176 64 1 1962 432 86 0 0 chr1 180584789 180584859 -16610573 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1962 190 307 89 22 chr1 180585005 180585095 -16610337 + L2a LINE L2 3331 3426 0 1 1962 812 236 69 40 chr1 180585215 180585489 -16609943 - B4A SINE B4 -8 284 3 1 1962 588 328 20 15 chr1 180586012 180586210 -16609222 + MER58A DNA MER1_type 21 219 -5 1 1962 904 180 73 20 chr1 180587062 180587266 -16608166 - B3 SINE B2 -1 215 1 1 1962 225 250 104 13 chr1 180587277 180587354 -16608078 - L1MB7 LINE L1 -20 6164 6081 1 1962 198 103 0 0 chr1 180588022 180588051 -16607381 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1962 255 31 0 0 chr1 180589130 180589162 -16606270 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1962 363 96 0 0 chr1 180589363 180589415 -16606017 + (CAAG)n Simple_repeat Simple_repeat 3 54 0 1 1962 1079 259 11 11 chr1 180590000 180590273 -16605159 - B4A SINE B4 -19 273 1 1 1962 1311 238 84 20 chr1 180591183 180591577 -16603855 + MTD LTR MaLR 1 419 0 1 1962 235 344 74 22 chr1 180591702 180592017 -16603415 + L2a LINE L2 60 450 -2969 1 1962 188 67 33 0 chr1 180592281 180592311 -16603121 + (CAT)n Simple_repeat Simple_repeat 3 33 0 1 1962 517 28 0 27 chr1 180592311 180592384 -16603048 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1962 614 251 156 5 chr1 180592542 180592734 -16602698 - MLT1A0 LTR MaLR -4 361 141 1 1962 249 328 129 38 chr1 180592845 180593108 -16602324 + L2a LINE L2 2938 3224 -202 1 1962 198 0 0 0 chr1 180594848 180594870 -16600562 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1962 632 308 50 18 chr1 180595451 180595729 -16599703 + B4A SINE B4 4 290 -2 1 1962 386 392 0 13 chr1 180595730 180595880 -16599552 + (CACG)n Simple_repeat Simple_repeat 4 151 0 1 1962 207 295 43 87 chr1 180595896 180596011 -16599421 - MIRc SINE MIR -150 118 9 1 1962 715 303 77 5 chr1 180597335 180597544 -16597888 + B4A SINE B4 64 287 -5 1 1962 429 20 0 0 chr1 180597568 180597618 -16597814 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1962 189 294 0 19 chr1 180599087 180599139 -16596293 - L2 LINE L2 -620 2799 2749 1 1962 375 23 0 0 chr1 180599291 180599335 -16596097 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1962 306 0 0 0 chr1 180600035 180600069 -16595363 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1962 453 36 0 0 chr1 180600076 180600131 -16595301 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1962 324 0 0 0 chr1 180600131 180600166 -16595266 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1962 801 307 47 22 chr1 180600184 180600460 -16594972 - B4A SINE B4 -8 284 2 1 1962 237 224 0 0 chr1 180600672 180600730 -16594702 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1 1962 776 292 107 11 chr1 180600826 180601089 -16594343 + B4A SINE B4 1 288 -4 1 1962 234 300 111 0 chr1 180601356 180601446 -16593986 + B4A SINE B4 173 272 -20 1 1962 240 35 0 0 chr1 180601677 180601706 -16593726 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 1 1962 186 71 0 0 chr1 180602003 180602031 -16593401 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1962 230 377 86 14 chr1 180604263 180604403 -16591029 - L2b LINE L2 0 3375 3226 1 1962 710 278 34 0 chr1 180606580 180606785 -16588647 - ID_B1 SINE B4 -9 215 4 1 1962 341 274 37 19 chr1 180608208 180608316 -16587116 - PB1D7 SINE Alu -10 110 1 1 1962 187 378 46 33 chr1 180609817 180609970 -16585462 + MIR SINE MIR 1 155 -107 1 1962 366 246 5 12 chr1 180610505 180610604 -16584828 + B1F SINE Alu 49 149 0 1 1962 723 340 64 4 chr1 180610823 180611103 -16584329 - MLT1J2 LTR MaLR -114 334 38 1 1962 471 78 0 0 chr1 180611675 180611739 -16583693 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1962 931 251 30 0 chr1 180611747 180611950 -16583482 - B3 SINE B2 -4 212 4 1 1962 840 263 128 76 chr1 180612062 180612391 -16583041 - MTEa LTR MaLR 0 379 34 1 1962 726 292 214 0 chr1 180614935 180615308 -16580124 + MLT1D LTR MaLR 1 453 -52 1 1962 497 262 4 59 chr1 180615917 180616071 -16579361 + MER5B DNA MER1_type 2 149 -40 1 1962 236 172 46 108 chr1 180616151 180616216 -16579216 - ORR1E LTR MaLR -23 356 296 1 1962 488 296 112 32 chr1 180616186 180616465 -16578967 + B4 SINE B4 7 274 -18 1 1962 495 84 32 0 chr1 180616508 180616603 -16578829 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 1962 340 278 127 66 chr1 180616606 180616818 -16578614 - ORR1E LTR MaLR -50 309 85 1 1962 489 270 138 51 chr1 180616980 180617175 -16578257 - MLT1C LTR MaLR -197 270 59 1 1963 22 0 0 0 chr1 180618829 180618851 -16576581 + AT_rich Low_complexity Low_complexity 1 22 0 2 1963 228 298 30 60 chr1 180619457 180619557 -16575875 - MIRc SINE MIR -126 142 46 2 1963 432 0 0 0 chr1 180621794 180621842 -16573590 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1963 2293 82 114 6 chr1 180622779 180623111 -16572321 + RLTR9A LTR ERVK 1 368 0 2 1963 189 0 0 0 chr1 180623421 180623442 -16571990 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 2 1963 5554 138 49 48 chr1 180623511 180624584 -16570848 + ETnERV2-int LTR ERVK 1053 2126 -5280 2 1963 351 309 0 0 chr1 180624835 180624916 -16570516 + ID4_ SINE ID 1 81 -2 2 1963 340 212 0 0 chr1 180624977 180625043 -16570389 + Charlie1a DNA MER1_type 106 171 -1284 2 1963 22 0 0 0 chr1 180625043 180625065 -16570367 + AT_rich Low_complexity Low_complexity 1 22 0 2 1963 441 0 0 0 chr1 180625147 180625196 -16570236 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1963 186 43 0 0 chr1 180625196 180625218 -16570214 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1963 548 314 0 0 chr1 180625239 180625392 -16570040 - RSINE1 SINE B4 -10 155 3 2 1963 1179 62 0 0 chr1 180625608 180625752 -16569680 + B1_Mm SINE Alu 2 145 -2 2 1963 886 314 27 82 chr1 180625770 180626211 -16569221 + Charlie1a DNA MER1_type 493 909 -546 2 1963 35 63 0 0 chr1 180626220 180626283 -16569149 + AT_rich Low_complexity Low_complexity 1 63 0 2 1963 706 248 0 76 chr1 180626285 180626495 -16568937 - B3A SINE B2 -4 194 1 2 1963 506 326 71 11 chr1 180626504 180626687 -16568745 + Charlie1a DNA MER1_type 915 1108 -347 2 1963 486 187 11 0 chr1 180626857 180626948 -16568484 + B4 SINE B4 151 242 -50 2 1963 981 143 12 47 chr1 180626953 180627122 -16568310 - URR1B DNA MER1_type -62 163 1 2 1963 793 114 134 22 chr1 180627348 180627482 -16567950 + B1_Mur3 SINE Alu 1 149 0 2 1963 289 260 128 20 chr1 180627542 180627644 -16567788 - PB1D10 SINE Alu -2 115 3 2 1963 288 185 0 97 chr1 180627592 180627664 -16567768 - ID_B1 SINE B4 -90 134 70 2 1963 227 239 70 56 chr1 180628087 180628158 -16567274 + MER5B DNA MER1_type 21 92 -86 2 1963 23 54 0 0 chr1 180628639 180628676 -16566756 + AT_rich Low_complexity Low_complexity 1 37 0 2 1963 804 263 29 24 chr1 180628865 180629075 -16566357 - B3 SINE B2 -5 211 1 2 1963 493 290 64 57 chr1 180629080 180629401 -16566031 + MER33 DNA MER1_type 2 320 -4 2 1963 1345 173 143 4 chr1 180629606 180629885 -16565547 + Lx5 LINE L1 6733 7050 0 2 1963 587 300 27 0 chr1 180631277 180631427 -16564005 + ID_B1 SINE B4 5 158 -66 2 1963 252 0 0 0 chr1 180631434 180631462 -16563970 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1963 360 0 0 0 chr1 180631462 180631501 -16563931 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1963 1127 237 7 86 chr1 180631501 180631792 -16563640 + B4 SINE B4 19 286 -6 2 1963 471 260 44 54 chr1 180631933 180631965 -16563467 + CYRA11_Mm Unknown Y-chromosome 145 174 -443 2 1963 1128 126 23 0 chr1 180631965 180632139 -16563293 - URR1B DNA MER1_type 0 225 48 2 1963 519 17 0 0 chr1 180635204 180635264 -16560168 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1963 211 260 85 61 chr1 180635294 180635376 -16560056 - RSINE1 SINE B4 -3 162 79 2 1963 792 183 79 55 chr1 180636155 180636357 -16559075 + B3 SINE B2 3 209 -7 2 1963 2320 27 0 0 chr1 180636608 180636871 -16558561 + L1Md_T LINE L1 5324 5586 -297 2 1963 8177 54 0 0 chr1 180636871 180637867 -16557565 + L1Md_T LINE L1 5587 6582 0 2 1963 301 290 75 63 chr1 180639121 180639360 -16556072 - L1MB3 LINE L1 -2 6181 5940 2 1963 873 128 0 0 chr1 180640367 180640515 -16554917 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 1963 247 213 16 0 chr1 180640552 180640613 -16554819 + CT-rich Low_complexity Low_complexity 1 62 0 2 1963 402 230 17 0 chr1 180641826 180642000 -16553432 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1963 607 206 12 0 chr1 180642041 180642211 -16553221 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1963 198 348 68 25 chr1 180642396 180642514 -16552918 + MIRc SINE MIR 31 153 -115 2 1963 191 255 43 0 chr1 180643023 180643070 -16552362 - L4 LINE RTE -1511 518 470 2 1963 1118 264 50 50 chr1 180644714 180645093 -16550339 - MTE2a LTR MaLR 0 379 1 2 1963 533 250 22 29 chr1 180645113 180645238 -16550194 + ID_B1 SINE B4 87 213 -11 2 1963 203 0 37 0 chr1 180645238 180645265 -16550167 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1963 601 253 18 31 chr1 180646225 180646388 -16549044 - MER20 DNA MER1_type 0 219 59 2 1963 230 329 95 57 chr1 180646708 180646866 -16548566 - MIR3 SINE MIR -25 183 20 2 1963 762 113 0 0 chr1 180647695 180647810 -16547622 + (TCCA)n Simple_repeat Simple_repeat 2 116 0 2 1963 568 291 37 19 chr1 180647810 180647960 -16547472 - RSINE1 SINE B4 -10 155 2 2 1963 567 266 378 3 chr1 180648316 180648610 -16546822 - MLT1A1 LTR MaLR 0 408 5 2 1963 229 354 0 12 chr1 180648747 180648827 -16546605 + ID2 SINE ID 3 81 -2 2 1963 243 200 18 35 chr1 180649428 180649485 -16545947 + MT2A LTR ERVL 1 56 -477 2 1963 293 313 46 108 chr1 180649532 180649772 -16545660 + ORR1E LTR MaLR 98 322 -37 2 1963 801 251 35 0 chr1 180651676 180651847 -16543585 + B3 SINE B2 2 178 -38 2 1963 421 325 6 99 chr1 180652024 180652195 -16543237 - ID_B1 SINE B4 0 224 70 2 1963 385 266 36 23 chr1 180652211 180652344 -16543088 - B4 SINE B4 -147 145 1 2 1963 357 235 0 36 chr1 180652439 180652523 -16542909 + ID_B1 SINE B4 104 184 -40 2 1963 297 308 45 45 chr1 180652523 180652551 -16542881 + B1F1 SINE Alu 23 134 -15 2 1963 260 251 18 114 chr1 180652962 180653110 -16542322 - MIR SINE MIR -45 163 30 2 1963 820 284 49 8 chr1 180653271 180653534 -16541898 + B4A SINE B4 2 275 -17 2 1963 340 254 0 23 chr1 180653557 180653730 -16541702 + (CATA)n Simple_repeat Simple_repeat 2 170 0 2 1963 491 250 0 4 chr1 180653735 180654001 -16541431 + (CA)n Simple_repeat Simple_repeat 1 264 0 2 1963 191 267 12 0 chr1 180654027 180654113 -16541319 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1963 183 156 0 0 chr1 180654114 180654146 -16541286 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 1963 186 43 0 0 chr1 180655452 180655475 -16539957 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1963 468 51 0 0 chr1 180656453 180656512 -16538920 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1963 670 176 14 0 chr1 180656879 180657027 -16538405 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 2 1963 358 228 0 48 chr1 180657880 180657963 -16537469 + ID2 SINE ID 2 80 -3 2 1963 182 150 49 24 chr1 180658194 180658235 -16537197 - L2 LINE L2 -599 2820 2779 2 1963 293 335 48 65 chr1 180659483 180659777 -16535655 + L1ME1 LINE L1 5675 5963 -216 2 1963 516 265 23 8 chr1 180659817 180659950 -16535482 + B4A SINE B4 140 274 -18 2 1963 408 40 0 0 chr1 180659957 180660007 -16535425 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1963 740 69 98 0 chr1 180660204 180660306 -16535126 + B1_Mus2 SINE Alu 32 143 -4 2 1963 351 0 0 0 chr1 180660307 180660346 -16535086 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1963 306 0 0 0 chr1 180660418 180660452 -16534980 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1963 421 258 116 12 chr1 180660522 180660749 -16534683 - B4 SINE B4 -2 290 2 2 1963 303 212 0 83 chr1 180660855 180660927 -16534505 + CR1_Mam LINE CR1 1806 1871 -333 2 1963 2051 124 52 30 chr1 180660948 180661314 -16534118 + ORR1D1 LTR MaLR 1 374 0 2 1963 948 266 124 102 chr1 180661500 180661969 -16533463 + RMER5 LTR ERV1 38 516 -18 2 1963 2421 156 20 20 chr1 180664529 180664981 -16530451 - RLTR11B LTR ERVK -1 452 1 2 1963 266 258 136 9 chr1 180666117 180666223 -16529209 - MLT1A1 LTR MaLR -43 365 209 2 1963 208 59 118 0 chr1 180666251 180666319 -16529113 + (CAGG)n Simple_repeat Simple_repeat 1 76 0 2 1963 387 0 0 0 chr1 180667695 180667738 -16527694 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1963 830 294 90 19 chr1 180667813 180668135 -16527297 + MLT1A0 LTR MaLR 21 365 0 2 1963 482 31 0 15 chr1 180668373 180668438 -16526994 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1963 258 287 38 129 chr1 180668509 180668641 -16526791 - B1F SINE Alu -29 120 1 2 1963 214 174 0 0 chr1 180669006 180669052 -16526380 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 2 1963 252 0 0 0 chr1 180670092 180670120 -16525312 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1963 223 329 0 0 chr1 180670729 180670802 -16524630 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1963 506 321 65 51 chr1 180670812 180671088 -16524344 - B4 SINE B4 -11 281 2 2 1963 1127 89 18 0 chr1 180671108 180671276 -16524156 + (TCTCCC)n Simple_repeat Simple_repeat 4 174 0 2 1963 1937 291 56 46 chr1 180671433 180672453 -16522979 - L1MB4 LINE L1 -20 6160 5139 2 1963 1445 70 32 0 chr1 180672453 180672638 -16522794 - B2_Mm2 SINE B2 -3 192 2 2 1963 870 271 93 35 chr1 180672638 180672839 -16522593 - L1MB4 LINE L1 -1008 5138 4926 2 1963 247 294 0 0 chr1 180672885 180672953 -16522479 - MER96B DNA hAT -183 234 167 2 1963 225 0 0 0 chr1 180673001 180673026 -16522406 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1963 285 118 0 0 chr1 180673191 180673242 -16522190 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1963 715 249 125 29 chr1 180673898 180674179 -16521253 - Tigger7 DNA MER2_type -32 2459 2152 2 1963 506 350 6 0 chr1 180674196 180674359 -16521073 - Tigger7 DNA MER2_type -2292 199 36 2 1963 330 240 18 127 chr1 180675106 180675216 -16520216 - ID_B1 SINE B4 -29 195 98 2 1963 231 319 74 11 chr1 180676771 180676866 -16518566 + PB1D7 SINE Alu 18 118 -2 2 1963 204 40 0 0 chr1 180678809 180678834 -16516598 + (ATG)n Simple_repeat Simple_repeat 3 27 0 2 1963 378 0 0 0 chr1 180678834 180678876 -16516556 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1963 730 250 38 11 chr1 180678876 180679056 -16516376 - B3 SINE B2 -25 191 6 2 1963 239 243 0 0 chr1 180679441 180679511 -16515921 - L1M2 LINE L1 -981 5162 5093 3 1963 497 225 76 42 chr1 180679516 180679660 -16515772 + B1F2 SINE Alu 1 149 0 3 1963 431 220 11 0 chr1 180679993 180680084 -16515348 - L1M2 LINE L1 -1217 4926 4835 3 1963 548 295 22 20 chr1 180680083 180680328 -16515104 + L1MA6 LINE L1 5741 5987 -304 3 1963 327 89 0 0 chr1 180680808 180680853 -16514579 - HAL1-3A_ME LINE L1 -838 2020 1976 3 1963 253 308 0 13 chr1 180680861 180680940 -16514492 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1963 928 249 9 18 chr1 180681924 180682141 -16513291 - B3 SINE B2 0 216 2 3 1963 181 236 127 0 chr1 180682942 180682997 -16512435 - MIRb SINE MIR -81 187 126 3 1963 227 337 11 11 chr1 180684232 180684319 -16511113 + MTEa LTR MaLR 256 342 -37 3 1963 1852 182 10 58 chr1 180684400 180684797 -16510635 - ORR1C1 LTR MaLR 0 378 1 3 1963 656 175 0 23 chr1 180686397 180686533 -16508899 - ORR1B2 LTR MaLR -197 173 36 3 1963 2734 174 133 16 chr1 180686554 180687195 -16508237 - RMER19A LTR ERVK 0 737 22 3 1963 414 0 0 0 chr1 180687776 180687822 -16507610 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1963 523 126 10 10 chr1 180689406 180689502 -16505930 + (GGA)n Simple_repeat Simple_repeat 3 98 0 3 1963 4572 68 0 12 chr1 180689668 180690264 -16505168 - L1Md_F2 LINE L1 0 6582 5994 3 1963 8179 54 6 30 chr1 180690264 180691501 -16503931 + L1Md_F2 LINE L1 4822 6014 -568 3 1963 740 42 10 0 chr1 180692001 180692097 -16503335 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 3 1963 1340 9 0 32 chr1 180692732 180692948 -16502484 + (TG)n Simple_repeat Simple_repeat 1 209 0 3 1963 441 0 0 0 chr1 180693411 180693460 -16501972 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1963 225 0 0 0 chr1 180693460 180693484 -16501948 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1963 212 360 35 0 chr1 180694140 180694254 -16501178 + BC1_Mm scRNA scRNA 16 133 -19 3 1963 682 332 14 5 chr1 180694508 180694717 -16500715 - B4 SINE B4 -2 290 80 3 1963 212 152 43 0 chr1 180694717 180694763 -16500669 + T-rich Low_complexity Low_complexity 5 52 0 3 1963 482 247 24 54 chr1 180694766 180694933 -16500499 - RSINE1 SINE B4 -2 163 2 3 1963 287 290 65 7 chr1 180695205 180695344 -16500088 - L2a LINE L2 0 3426 3280 3 1963 372 22 0 0 chr1 180696123 180696168 -16499264 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1963 219 114 0 0 chr1 180696177 180696212 -16499220 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1963 186 167 0 0 chr1 180696305 180696341 -16499091 + CT-rich Low_complexity Low_complexity 1 36 0 3 1963 609 281 119 42 chr1 180696491 180696803 -16498629 + MER2 DNA MER2_type 10 345 0 3 1963 219 189 19 0 chr1 180697172 180697225 -16498207 + A-rich Low_complexity Low_complexity 1 54 0 3 1963 230 329 0 0 chr1 180697234 180697310 -16498122 + B4A SINE B4 217 292 0 3 1963 300 366 0 0 chr1 180697310 180697441 -16497991 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1963 188 67 0 32 chr1 180697452 180697483 -16497949 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1963 1016 279 78 26 chr1 180697487 180697984 -16497448 - L1MB7 LINE L1 -32 6152 5630 3 1963 700 291 132 27 chr1 180698062 180698510 -16496922 - L2a LINE L2 -623 2796 2302 3 1963 408 217 0 0 chr1 180698787 180698879 -16496553 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 3 1963 562 304 76 38 chr1 180699131 180699394 -16496038 + B4A SINE B4 7 279 -13 3 1963 357 265 0 0 chr1 180699550 180699633 -16495799 - RMER30 DNA MER1_type -1 201 119 3 1963 343 305 56 72 chr1 180699556 180699736 -16495696 + Charlie12 DNA MER1_type 7 183 -2690 3 1963 279 0 0 0 chr1 180699922 180699953 -16495479 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1963 613 80 0 29 chr1 180701073 180701176 -16494256 + (GGGAGA)n Simple_repeat Simple_repeat 5 104 0 3 1963 777 309 26 35 chr1 180701950 180702321 -16493111 + ORR1E LTR MaLR 12 370 0 3 1963 488 305 79 28 chr1 180702592 180702808 -16492624 + ORR1D2 LTR MaLR 1 227 -143 3 1963 245 241 17 0 chr1 180702814 180702872 -16492560 + tRNA-Ala-GCY_ tRNA tRNA 3 61 -14 3 1963 1069 117 0 22 chr1 180703480 180703664 -16491768 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1963 294 164 0 0 chr1 180703664 180703719 -16491713 + CT-rich Low_complexity Low_complexity 1 55 0 3 1963 926 284 58 3 chr1 180703719 180704030 -16491402 + L1MB3 LINE L1 5803 6130 -53 3 1963 500 209 149 14 chr1 180704100 180704241 -16491191 + B4 SINE B4 2 161 -131 3 1963 587 136 9 0 chr1 180705830 180705940 -16489492 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 3 1963 866 151 39 21 chr1 180705953 180706237 -16489195 + (TAGA)n Simple_repeat Simple_repeat 1 288 0 3 1963 599 165 199 12 chr1 180706300 180706466 -16488966 - ORR1D1 LTR MaLR 0 374 178 3 1963 180 0 0 0 chr1 180706485 180706505 -16488927 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1963 258 105 0 0 chr1 180707261 180707299 -16488133 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1963 642 293 64 60 chr1 180707314 180707597 -16487835 - B4 SINE B4 -7 285 2 3 1963 1029 254 38 4 chr1 180708763 180709028 -16486404 + B4 SINE B4 1 274 -18 3 1963 279 79 0 0 chr1 180710371 180710409 -16485023 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1963 573 55 0 0 chr1 180710766 180710839 -16484593 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 3 1963 303 327 109 81 chr1 180711158 180712063 -16483369 + L1MEg LINE L1 800 1730 -4512 3 1963 673 335 144 15 chr1 180712166 180712202 -16483230 + Lx9 LINE L1 7078 7113 -531 3 1963 3352 48 0 5 chr1 180712202 180712600 -16482832 + MTA_Mm LTR MaLR 1 396 0 3 1963 673 335 144 15 chr1 180712600 180713020 -16482412 + Lx9 LINE L1 7114 7593 -51 3 1963 260 243 71 0 chr1 180713111 180713181 -16482251 + L1ME2z LINE L1 6368 6442 -2 3 1963 459 327 40 40 chr1 180713524 180713846 -16481586 + L1MEg LINE L1 2150 2471 -3675 3 1963 463 160 29 29 chr1 180713861 180713964 -16481468 - MLT1A1 LTR MaLR 0 408 306 3 1963 770 167 0 8 chr1 180713978 180714111 -16481321 + MT2A LTR ERVL 1 132 -401 3 1963 496 110 24 0 chr1 180714107 180714189 -16481243 + MT2A LTR ERVL 94 177 -356 3 1963 399 89 0 0 chr1 180714211 180714267 -16481165 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1963 283 283 80 10 chr1 180714398 180714498 -16480934 - MLT1A1 LTR MaLR -299 109 3 3 1963 2017 284 80 34 chr1 180714540 180715463 -16479969 + RCHARR1 DNA MER1_type 2 967 -7 3 1963 445 285 0 16 chr1 180715508 180715633 -16479799 + L1MEg LINE L1 2686 2808 -3338 3 1963 3269 106 8 19 chr1 180716244 180716724 -16478708 - MT2C_Mm LTR ERVL 0 475 1 3 1963 552 77 0 0 chr1 180716985 180717063 -16478369 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1963 1399 275 148 46 chr1 180718222 180719098 -16476334 - RCHARR1 DNA MER1_type -1 973 9 3 1963 591 284 12 30 chr1 180719646 180719813 -16475619 + RSINE1 SINE B4 2 165 0 3 1963 203 265 20 0 chr1 180720956 180721005 -16474427 - MIR SINE MIR -87 175 126 3 1963 413 286 66 29 chr1 180721067 180721262 -16474170 + MIR SINE MIR 50 241 -21 3 1963 230 250 0 0 chr1 180723240 180723288 -16472144 + CT-rich Low_complexity Low_complexity 3 50 0 3 1963 738 113 0 0 chr1 180723476 180723591 -16471841 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 3 1963 201 74 0 0 chr1 180724302 180724329 -16471103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1963 333 271 151 8 chr1 180725198 180725317 -16470115 - LTR16A LTR ERVL -311 140 5 3 1963 201 232 0 55 chr1 180726025 180726037 -16469395 + T-rich Low_complexity Low_complexity 59 69 0 3 1963 1188 62 7 0 chr1 180726037 180726182 -16469250 - B1_Mus2 SINE Alu 0 147 2 3 1963 201 232 0 55 chr1 180726182 180726242 -16469190 + T-rich Low_complexity Low_complexity 1 58 0 3 1963 298 340 79 84 chr1 180726763 180727119 -16468313 - ORR1E LTR MaLR -5 354 1 3 1963 1183 94 0 11 chr1 180728302 180728484 -16466948 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1963 246 32 0 0 chr1 180728488 180728519 -16466913 + (CCTG)n Simple_repeat Simple_repeat 2 32 0 3 1963 313 285 128 44 chr1 180731797 180731977 -16463455 + L1MA8 LINE L1 6082 6276 -15 3 1963 606 256 90 11 chr1 180732096 180732274 -16463158 + RMER30 DNA MER1_type 8 199 -3 3 1963 580 239 0 33 chr1 180732387 180732508 -16462924 + B3 SINE B2 100 216 0 3 1963 549 0 0 0 chr1 180733543 180733604 -16461828 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1963 306 354 52 91 chr1 180734284 180734570 -16460862 - ORR1E LTR MaLR -11 348 74 3 1963 560 106 44 22 chr1 180735252 180735387 -16460045 + CT-rich Low_complexity Low_complexity 1 138 0 3 1963 1004 260 28 35 chr1 180735419 180735674 -16459758 - B4 SINE B4 -35 257 5 3 1963 477 0 0 0 chr1 180735862 180735915 -16459517 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1963 306 306 7 95 chr1 180736176 180736256 -16459176 + ID SINE ID 16 83 -141 3 1963 309 308 39 0 chr1 180736256 180736360 -16459072 + PB1D10 SINE Alu 3 110 -7 3 1963 1874 261 119 17 chr1 180736947 180737595 -16457837 - Lx8 LINE L1 -9 7464 6751 3 1963 2096 151 110 0 chr1 180738909 180739273 -16456159 + MTC LTR MaLR 8 411 -10 3 1963 721 262 107 37 chr1 180739700 180739970 -16455462 + B4 SINE B4 3 291 -1 3 1963 390 297 0 0 chr1 180739973 180740249 -16455183 + (CA)n Simple_repeat Simple_repeat 1 276 0 3 1963 318 298 4 0 chr1 180740261 180740520 -16454912 + (CA)n Simple_repeat Simple_repeat 1 260 0 3 1963 507 340 70 55 chr1 180741512 180741659 -16453773 - ORR1E LTR MaLR -9 350 207 3 1963 369 0 0 0 chr1 180741659 180741700 -16453732 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1963 507 340 70 55 chr1 180741700 180741897 -16453535 - ORR1E LTR MaLR -153 206 1 3 1963 2236 126 33 71 chr1 180742937 180743330 -16452102 - ORR1C1 LTR MaLR 0 378 1 3 1963 636 330 0 0 chr1 180743971 180744147 -16451285 + B3A SINE B2 1 176 -22 3 1963 351 0 0 0 chr1 180744169 180744208 -16451224 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1963 423 0 0 0 chr1 180744208 180744254 -16451178 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1963 21 0 0 0 chr1 180745614 180745635 -16449797 + AT_rich Low_complexity Low_complexity 1 21 0 3 1963 314 203 40 7 chr1 180745896 180746045 -16449387 + (TA)n Simple_repeat Simple_repeat 1 154 0 3 1963 263 202 35 12 chr1 180746046 180746131 -16449301 + (TATAA)n Simple_repeat Simple_repeat 4 90 0 3 1963 180 345 0 0 chr1 180746435 180746490 -16448942 + MIRb SINE MIR 211 265 -3 3 1963 202 192 39 0 chr1 180747594 180747646 -16447786 + (TAA)n Simple_repeat Simple_repeat 2 55 0 4 1963 644 215 134 78 chr1 180747731 180747999 -16447433 - MTE2b LTR MaLR -96 283 1 4 1964 240 297 112 35 chr1 180748505 180748648 -16446784 - RMER15 LTR ERVL -17 558 405 4 1964 279 345 78 49 chr1 180749178 180749382 -16446050 - MLT1G1 LTR MaLR -39 552 343 4 1964 511 318 97 24 chr1 180749397 180749603 -16445829 - MLT1G1 LTR MaLR -356 223 3 4 1964 284 332 111 41 chr1 180749899 180750542 -16444890 - L2 LINE L2 -873 2546 1745 4 1964 333 140 0 50 chr1 180750581 180750641 -16444791 + HAL1-3A_ME LINE L1 1975 2031 -827 4 1964 248 329 0 0 chr1 180751955 180752028 -16443404 + MER44B DNA MER2_type 27 99 -451 4 1964 242 328 0 0 chr1 180754490 180754551 -16440881 + MIRm SINE MIR 211 271 -5 4 1964 214 244 131 15 chr1 180754521 180754611 -16440821 - L2b LINE L2 -12 3375 3279 4 1964 3193 48 18 15 chr1 180754651 180755050 -16440382 + MTB LTR MaLR 1 400 0 4 1964 319 255 28 38 chr1 180755220 180755326 -16440106 - MamRep434 DNA TcMar -208 218 114 4 1964 543 130 0 0 chr1 180756007 180756107 -16439325 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 1964 2401 81 19 3 chr1 180756994 180757316 -16438116 - ORR1A2 LTR MaLR 0 327 1 4 1964 288 0 0 0 chr1 180757328 180757360 -16438072 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1964 555 16 0 0 chr1 180758815 180758879 -16436553 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1964 706 288 174 47 chr1 180760436 180760753 -16434679 - ORR1E LTR MaLR -2 357 1 4 1964 1568 285 39 27 chr1 180761029 180761545 -16433887 - RMER5 LTR ERV1 -12 522 1 4 1964 203 131 21 21 chr1 180761807 180761854 -16433578 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1964 234 148 0 0 chr1 180762065 180762119 -16433313 + (T)n Simple_repeat Simple_repeat 1 54 0 4 1964 1169 41 7 14 chr1 180762120 180762267 -16433165 - B1_Mm SINE Alu -1 146 1 4 1964 21 0 0 0 chr1 180762324 180762345 -16433087 + AT_rich Low_complexity Low_complexity 1 21 0 4 1964 428 0 19 0 chr1 180763786 180763838 -16431594 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1964 925 290 39 0 chr1 180763838 180764097 -16431335 - B4 SINE B4 -23 269 1 4 1964 207 234 0 80 chr1 180764387 180764475 -16430957 + T-rich Low_complexity Low_complexity 4 84 0 4 1964 629 227 0 0 chr1 180764476 180764595 -16430837 - PB1D7 SINE Alu -1 119 1 4 1964 698 268 111 30 chr1 180768444 180768679 -16426753 - B4A SINE B4 -33 259 6 4 1964 185 186 23 0 chr1 180769532 180769575 -16425857 + L3 LINE CR1 2005 2048 -2441 4 1964 447 275 54 54 chr1 180769823 180770013 -16425419 + L1MB7 LINE L1 5928 6117 -67 4 1964 670 191 192 91 chr1 180770013 180770278 -16425154 + B4 SINE B4 1 292 0 4 1964 447 275 54 54 chr1 180770278 180770329 -16425103 + L1MB7 LINE L1 6118 6169 -15 4 1964 185 94 31 0 chr1 180771855 180771887 -16423545 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 4 1964 423 0 0 0 chr1 180772387 180772434 -16422998 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1964 499 281 0 48 chr1 180772488 180772502 -16422930 - ID_B1 SINE B4 0 224 213 4 1964 180 0 0 0 chr1 180772502 180772522 -16422910 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 4 1964 499 281 0 48 chr1 180772522 180772653 -16422779 - ID_B1 SINE B4 -12 212 86 4 1964 3220 6 0 0 chr1 180774597 180774961 -16420471 - MT2_Mm LTR ERVL -129 364 1 4 1964 260 224 95 95 chr1 180774961 180775017 -16420415 - ORR1A3-int LTR MaLR -1350 613 558 4 1964 299 152 212 0 chr1 180775547 180775613 -16419819 - B1F SINE Alu -8 141 62 4 1964 827 177 199 6 chr1 180776181 180776357 -16419075 + B3 SINE B2 1 210 -6 4 1964 398 235 0 66 chr1 180776384 180776445 -16418987 + PB1D10 SINE Alu 23 83 -34 4 1964 3507 25 2 0 chr1 180776445 180776840 -16418592 - MTA_Mm LTR MaLR 0 396 1 4 1964 398 235 0 66 chr1 180776840 180776869 -16418563 + PB1D10 SINE Alu 84 107 -10 4 1964 231 276 0 0 chr1 180776869 180776956 -16418476 + GA-rich Low_complexity Low_complexity 1 87 0 4 1964 284 120 20 0 chr1 180779275 180779325 -16416107 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1964 1849 224 85 21 chr1 180779332 180779766 -16415666 - MT2A LTR ERVL -71 462 1 4 1964 210 275 105 32 chr1 180780297 180780345 -16415087 - ID_B1 SINE B4 -91 133 1 4 1964 212 240 105 13 chr1 180780345 180780421 -16415011 - ID4 SINE ID 0 83 1 4 1964 387 281 49 49 chr1 180780575 180780717 -16414715 + MER5A DNA MER1_type 1 142 -47 4 1964 279 0 0 0 chr1 180782004 180782035 -16413397 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1964 342 0 0 0 chr1 180783731 180783769 -16411663 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1964 309 254 14 0 chr1 180783774 180783845 -16411587 - ID4_ SINE ID -11 72 1 4 1964 384 301 5 68 chr1 180783854 180783990 -16411442 - B1F SINE Alu -2 147 10 4 1964 403 330 60 14 chr1 180784145 180784363 -16411069 + Lx9 LINE L1 7236 7463 -181 4 1964 323 88 0 107 chr1 180784367 180784425 -16411007 + B1_Mm SINE Alu 57 137 -10 4 1964 270 0 0 0 chr1 180784425 180784455 -16410977 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1964 323 41 0 93 chr1 180784455 180784468 -16410964 + B1_Mm SINE Alu 138 146 -1 4 1964 310 287 55 91 chr1 180784470 180784635 -16410797 + L1MC LINE L1 3072 3230 -2916 4 1964 374 242 100 63 chr1 180785086 180785276 -16410156 - LTR45C LTR ERV1 -8 531 335 4 1964 751 259 70 85 chr1 180787321 180787591 -16407841 + B4A SINE B4 27 292 0 4 1964 261 305 9 0 chr1 180787593 180787698 -16407734 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 1964 423 254 30 0 chr1 180787646 180787811 -16407621 + (CAGA)n Simple_repeat Simple_repeat 1 170 0 4 1964 348 24 0 0 chr1 180788424 180788465 -16406967 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1964 620 280 24 96 chr1 180788578 180788787 -16406645 - B4 SINE B4 -96 196 3 4 1964 883 282 71 68 chr1 180788906 180789245 -16406187 - MER2 DNA MER2_type -5 340 1 4 1964 338 130 19 0 chr1 180789822 180789876 -16405556 - HAL1-3A_ME LINE L1 -829 2029 1975 4 1964 210 268 0 0 chr1 180789925 180789966 -16405466 - ID4 SINE ID -29 54 14 4 1964 230 344 36 48 chr1 180790013 180790054 -16405378 - B4A SINE B4 -46 246 86 4 1964 319 311 197 0 chr1 180790054 180790176 -16405256 - B1F2 SINE Alu -3 146 1 4 1964 289 320 95 8 chr1 180792309 180792435 -16402997 - MIRb SINE MIR -19 249 113 4 1964 1162 274 122 50 chr1 180792538 180792922 -16402510 + MTD LTR MaLR 1 412 -7 4 1964 218 313 71 71 chr1 180792938 180793079 -16402353 + MIRb SINE MIR 127 267 -1 4 1964 674 300 33 19 chr1 180793392 180793606 -16401826 + B4A SINE B4 1 217 -75 4 1964 259 71 84 14 chr1 180793609 180793680 -16401752 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 4 1964 251 338 14 0 chr1 180793954 180794028 -16401404 + L2a LINE L2 3332 3406 -20 4 1964 209 122 24 0 chr1 180794092 180794133 -16401299 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 4 1964 23 0 0 0 chr1 180794702 180794725 -16400707 + AT_rich Low_complexity Low_complexity 1 23 0 4 1964 766 245 146 67 chr1 180795407 180795618 -16399814 + B4A SINE B4 2 248 -44 4 1964 282 106 0 0 chr1 180795618 180795665 -16399767 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 1964 766 245 146 67 chr1 180795665 180795707 -16399725 + B4A SINE B4 249 275 -17 4 1964 270 0 0 0 chr1 180795753 180795783 -16399649 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1964 235 321 12 0 chr1 180797113 180797197 -16398235 + MIRc SINE MIR 61 145 -123 4 1964 378 42 0 0 chr1 180799092 180799140 -16396292 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1964 191 36 0 35 chr1 180800322 180800351 -16395081 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1964 415 318 39 51 chr1 180801810 180801966 -16393466 - MER5A DNA MER1_type -14 175 22 4 1964 1247 254 72 14 chr1 180802762 180803109 -16392323 - MTE2a LTR MaLR -12 367 1 4 1964 494 338 88 40 chr1 180803441 180803564 -16391868 + B4A SINE B4 4 127 -165 4 1964 1121 188 32 14 chr1 180803564 180803785 -16391647 - URR1B DNA MER1_type 0 225 1 4 1964 494 338 88 40 chr1 180803785 180803935 -16391497 + B4A SINE B4 128 290 -2 4 1964 286 182 18 0 chr1 180804593 180804648 -16390784 - MT2B2 LTR ERVL 0 584 529 4 1964 525 267 68 7 chr1 180804659 180804806 -16390626 - MT2A LTR ERVL -376 157 2 4 1964 389 284 8 8 chr1 180805496 180805613 -16389819 - PB1D10 SINE Alu 0 117 1 4 1964 239 311 50 32 chr1 180805671 180805890 -16389542 - L1ME1 LINE L1 -146 6033 5811 4 1964 187 262 45 15 chr1 180806856 180806922 -16388510 - L3 LINE CR1 -3491 998 931 4 1964 450 0 0 0 chr1 180807307 180807357 -16388075 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1964 639 39 0 0 chr1 180807402 180807480 -16387952 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1964 472 287 58 32 chr1 180807796 180807951 -16387481 + RSINE1 SINE B4 3 161 -4 4 1964 273 277 0 117 chr1 180808881 180808975 -16386457 + MTEa LTR MaLR 23 105 -274 4 1964 227 308 62 99 chr1 180809030 180809192 -16386240 + MTEa LTR MaLR 88 243 -127 4 1964 589 126 42 42 chr1 180809607 180809773 -16385659 + CT-rich Low_complexity Low_complexity 3 168 0 4 1964 1185 68 14 0 chr1 180809841 180809987 -16385445 + B1_Mus1 SINE Alu 1 148 0 4 1964 333 309 120 21 chr1 180810123 180810265 -16385167 - Tigger13a DNA MER2_type -572 199 44 4 1964 430 306 18 36 chr1 180810290 180810456 -16384976 + MER5B DNA MER1_type 14 176 -2 4 1964 509 275 133 10 chr1 180810782 180810977 -16384455 + ID_B1 SINE B4 1 219 -5 4 1964 760 306 10 46 chr1 180811913 180812215 -16383217 - B4A SINE B4 0 292 2 4 1964 436 291 123 23 chr1 180812228 180812631 -16382801 - L1MEc LINE L1 -4696 1719 1207 4 1964 222 37 0 0 chr1 180812631 180812658 -16382774 + (CCCCCT)n Simple_repeat Simple_repeat 2 28 0 4 1964 436 284 146 27 chr1 180812658 180812816 -16382616 - L1MEc LINE L1 -5194 1206 1041 4 1964 262 204 56 0 chr1 180813030 180813084 -16382348 - L1MEc LINE L1 -5812 588 532 4 1964 506 344 63 31 chr1 180813153 180813471 -16381961 - L1MEc LINE L1 -6028 372 45 4 1964 337 357 49 14 chr1 180813475 180813617 -16381815 + MIRb SINE MIR 99 245 -23 4 1964 252 229 107 68 chr1 180814499 180814602 -16380830 + MER53 DNA hAT 8 114 -79 5 1964 24 0 0 0 chr1 180817211 180817235 -16378197 + GC_rich Low_complexity Low_complexity 1 24 0 5 1964 264 186 0 0 chr1 180817962 180818021 -16377411 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1964 423 98 0 0 chr1 180818021 180818082 -16377350 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1964 1723 152 41 24 chr1 180818735 180819170 -16376262 - RMER17C LTR ERVK -519 439 16 5 1964 315 250 164 6 chr1 180821206 180821394 -16374038 - MIR SINE MIR -25 237 14 5 1964 2391 80 6 50 chr1 180821582 180821924 -16373508 - ORR1A2 LTR MaLR 0 327 1 5 1964 449 248 0 57 chr1 180822054 180822178 -16373254 + PB1D10 SINE Alu 1 117 0 5 1964 2458 74 12 6 chr1 180823144 180823482 -16371950 - L1_Mus2 LINE L1 0 6566 6227 5 1964 684 168 29 67 chr1 180824336 180824495 -16370937 + B4 SINE B4 134 292 0 5 1964 525 228 4 8 chr1 180825214 180825475 -16369957 + (TG)n Simple_repeat Simple_repeat 1 259 0 5 1964 1625 249 63 40 chr1 180825764 180826284 -16369148 - RMER5 LTR ERV1 -2 532 1 5 1964 385 356 119 28 chr1 180826982 180827300 -16368132 - L1MEd LINE L1 -5326 793 447 5 1964 248 326 69 7 chr1 180827845 180827990 -16367442 - BLACKJACK DNA AcHobo -175 2769 2616 5 1964 445 294 55 74 chr1 180827995 180828347 -16367085 + ORR1E LTR MaLR 9 353 -6 5 1964 703 258 107 128 chr1 180828626 180829110 -16366322 - BLACKJACK DNA AcHobo -947 1997 1524 5 1964 723 237 36 31 chr1 180829566 180829758 -16365674 + B3A SINE B2 2 194 -4 5 1964 188 100 0 24 chr1 180830610 180830651 -16364781 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1964 265 321 0 12 chr1 180830759 180830841 -16364591 + BC1_Mm scRNA scRNA 19 99 -53 5 1964 338 271 167 5 chr1 180831632 180831713 -16363719 + L1M4 LINE L1 5152 5250 -896 5 1964 738 230 0 0 chr1 180831713 180831848 -16363584 + B1_Mur1 SINE Alu 2 136 -13 5 1964 582 270 66 0 chr1 180831848 180832035 -16363397 + L1M4 LINE L1 5251 5454 -726 5 1964 470 272 6 0 chr1 180832336 180832509 -16362923 + (CA)n Simple_repeat Simple_repeat 2 175 0 5 1964 459 0 0 0 chr1 180832982 180833033 -16362399 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1964 1051 257 18 73 chr1 180833055 180833341 -16362091 - B4A SINE B4 -21 271 2 5 1964 418 181 0 0 chr1 180834772 180834844 -16360588 + RMER1B Other Other 666 737 -329 5 1964 210 37 0 0 chr1 180834844 180834871 -16360561 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1964 994 34 0 0 chr1 180834875 180834993 -16360439 - B1_Mus1 SINE Alu -13 135 18 5 1964 1749 121 3 90 chr1 180834993 180835337 -16360095 + RMER1B Other Other 747 1060 -6 5 1964 796 251 89 46 chr1 180835807 180836087 -16359345 + B4A SINE B4 1 292 0 5 1964 662 202 0 27 chr1 180836091 180836387 -16359045 + (CA)n Simple_repeat Simple_repeat 1 287 0 5 1964 284 323 166 26 chr1 180836444 180836673 -16358759 + L3 LINE CR1 4091 4351 -138 5 1964 1182 230 173 3 chr1 180837123 180837429 -16358003 - RMER1A Other Other -672 358 1 5 1964 431 260 110 0 chr1 180837431 180837585 -16357847 - RMER1A Other Other -787 243 73 5 1964 846 284 87 31 chr1 180837623 180838081 -16357351 - L1M2a LINE L1 -2188 4973 4490 5 1964 449 340 127 58 chr1 180838088 180838482 -16356950 - L1M2a LINE L1 -2874 4290 3870 5 1964 826 309 80 22 chr1 180838488 180838802 -16356630 - L1M2a LINE L1 -5487 1681 1350 5 1964 415 283 191 15 chr1 180839008 180839281 -16356151 - L1M2a LINE L1 -5868 1300 980 5 1964 1565 229 122 2 chr1 180839337 180839731 -16355701 - BGLII_B LTR ERVK 0 441 1 5 1964 446 329 112 36 chr1 180839760 180840091 -16355341 - L1M2a LINE L1 -6803 365 10 5 1964 1401 92 0 25 chr1 180840523 180840723 -16354709 - ORR1A2 LTR MaLR 0 327 133 5 1964 617 296 17 11 chr1 180841537 180841711 -16353721 - MER82 DNA MER2_type -15 638 464 5 1964 717 279 35 15 chr1 180841725 180841925 -16353507 - MER82 DNA MER2_type -238 415 212 5 1964 572 286 4 53 chr1 180842175 180842400 -16353032 - MER82 DNA MER2_type -439 214 1 5 1964 192 167 22 67 chr1 180843098 180843143 -16352289 + L4 LINE RTE 688 730 -1299 5 1964 213 121 0 0 chr1 180843682 180843715 -16351717 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1964 243 0 0 0 chr1 180849493 180849520 -16345912 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1964 186 225 154 98 chr1 180851000 180851123 -16344309 + MIRc SINE MIR 83 212 -56 5 1964 978 137 14 0 chr1 180851241 180851387 -16344045 + B1_Mur4 SINE Alu 2 149 -1 5 1964 395 152 0 12 chr1 180851389 180851469 -16343963 + GA-rich Low_complexity Low_complexity 3 81 0 5 1964 321 309 35 42 chr1 180851578 180851720 -16343712 - ORR1E LTR MaLR -176 183 43 5 1964 1473 152 0 0 chr1 180853625 180853849 -16341583 - URR1B DNA MER1_type -1 224 1 5 1964 665 243 33 40 chr1 180853913 180854063 -16341369 + B4 SINE B4 144 292 0 5 1964 264 306 0 0 chr1 180854064 180854136 -16341296 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1964 264 247 56 11 chr1 180854626 180854716 -16340716 + MLT1E3 LTR MaLR 476 624 0 5 1964 518 272 174 58 chr1 180854939 180855232 -16340200 + ORR1D2 LTR MaLR 9 335 -35 5 1964 381 22 0 0 chr1 180855619 180855665 -16339767 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1964 375 224 0 0 chr1 180855995 180856062 -16339370 + B3A SINE B2 2 68 -130 5 1964 589 334 23 6 chr1 180856062 180856367 -16339065 - L1M2 LINE L1 -569 5731 5419 5 1964 237 108 0 0 chr1 180856813 180856850 -16338582 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1964 710 207 0 6 chr1 180856883 180857063 -16338369 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1964 412 114 51 0 chr1 180857044 180857123 -16338309 + (CATA)n Simple_repeat Simple_repeat 2 84 0 5 1964 483 318 70 44 chr1 180857141 180857226 -16338206 + B4 SINE B4 1 85 -207 5 1964 697 59 10 19 chr1 180857226 180857330 -16338102 + (GAAA)n Simple_repeat Simple_repeat 1 103 0 5 1964 483 318 70 44 chr1 180857330 180857514 -16337918 + B4 SINE B4 86 277 -15 5 1964 408 20 0 0 chr1 180857539 180857588 -16337844 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1964 423 0 0 0 chr1 180857773 180857820 -16337612 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1964 361 311 32 24 chr1 180860083 180860208 -16335224 + MIR SINE MIR 51 176 -86 5 1964 333 0 0 0 chr1 180861624 180861661 -16333771 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1964 263 365 30 38 chr1 180861686 180861715 -16333717 + B1F SINE Alu 1 102 -47 5 1964 333 305 10 10 chr1 180861715 180861811 -16333621 + ID_B1 SINE B4 109 204 -20 5 1964 1623 244 62 10 chr1 180865227 180865632 -16329800 - BGLII_B LTR ERVK 0 441 16 5 1964 191 379 23 0 chr1 180868103 180868190 -16327242 + MIR SINE MIR 33 121 -141 5 1964 287 348 43 49 chr1 180868519 180868682 -16326750 + MIR3 SINE MIR 25 186 -22 5 1964 297 0 0 0 chr1 180870215 180870248 -16325184 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1964 3938 135 132 102 chr1 180870260 180871124 -16324308 - RMER19B LTR ERVK -12 890 1 5 1964 243 237 0 0 chr1 180871150 180871243 -16324189 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 1964 481 242 161 39 chr1 180871248 180871403 -16324029 - B4A SINE B4 -1 291 118 5 1964 260 193 0 109 chr1 180872421 180872485 -16322947 + MLT2B1 LTR ERVL 503 567 0 5 1964 847 244 70 10 chr1 180873728 180873927 -16321505 + ID_B1 SINE B4 9 219 -5 5 1964 213 267 100 82 chr1 180873974 180874084 -16321348 - MIRc SINE MIR -134 134 23 5 1964 618 165 58 0 chr1 180874353 180874456 -16320976 + MTD LTR MaLR 41 149 -270 5 1964 2494 85 0 0 chr1 180874456 180874775 -16320657 + ORR1A2 LTR MaLR 1 319 -8 5 1964 1158 217 44 31 chr1 180874780 180875054 -16320378 + MTD LTR MaLR 120 389 -30 5 1964 810 275 39 48 chr1 180875083 180875426 -16320006 - MLT1B LTR MaLR -49 359 6 5 1964 1201 242 129 21 chr1 180875512 180875803 -16319629 + ORR1D2 LTR MaLR 2 333 -37 5 1964 2469 150 17 15 chr1 180875803 180876209 -16319223 + MTB_Mm LTR MaLR 1 407 0 5 1964 1201 242 129 21 chr1 180876209 180876250 -16319182 + ORR1D2 LTR MaLR 334 370 0 5 1964 431 200 84 157 chr1 180876495 180876673 -16318759 + RSINE1 SINE B4 1 165 0 5 1964 207 195 24 0 chr1 180876679 180876720 -16318712 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1964 22 35 0 0 chr1 180876797 180876826 -16318606 + AT_rich Low_complexity Low_complexity 1 29 0 5 1964 584 237 9 9 chr1 180877063 180877178 -16318254 - RSINE1 SINE B4 -48 117 3 5 1964 348 283 30 10 chr1 180878051 180878151 -16317281 - PB1 SINE Alu -25 102 1 5 1964 316 247 94 0 chr1 180878265 180878350 -16317082 + L1M4 LINE L1 5404 5496 -678 5 1964 1082 299 95 14 chr1 180878443 180879022 -16316410 + L1MB3 LINE L1 5474 6099 -84 5 1964 1075 256 23 47 chr1 180879044 180879196 -16316236 - Lx8 LINE L1 -2 7471 7329 5 1964 246 81 0 0 chr1 180879196 180879233 -16316199 + (CAT)n Simple_repeat Simple_repeat 2 38 0 5 245 1075 256 23 47 chr1 180879233 180879424 -16316008 - Lx8 LINE L1 -145 7328 7136 5 1965 744 231 55 79 chr1 180879501 180879703 -16315729 + B3A SINE B2 2 198 0 5 1965 373 213 13 51 chr1 180879928 180880007 -16315425 - ID4_ SINE ID -6 77 2 5 1965 186 319 106 0 chr1 180880153 180880247 -16315185 - L3 LINE CR1 -246 4243 4140 5 1965 397 303 83 61 chr1 180880253 180880590 -16314842 - L1MEg LINE L1 -4859 1558 1118 5 1965 841 256 73 30 chr1 180880677 180880979 -16314453 - Lx8 LINE L1 -5 7468 7154 5 1965 1176 173 5 55 chr1 180882148 180882368 -16313064 - B3 SINE B2 -7 209 1 5 1965 312 27 0 0 chr1 180882445 180882482 -16312950 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1965 282 29 0 0 chr1 180882649 180882684 -16312748 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1965 234 289 37 0 chr1 180884352 180884446 -16310986 + MLT1H LTR MaLR 425 593 -31 5 1965 1128 290 100 37 chr1 180885629 180886814 -16308618 + L1MA4 LINE L1 4657 5939 -358 5 1965 297 0 0 0 chr1 180886814 180886847 -16308585 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1965 432 0 0 0 chr1 180886847 180886894 -16308538 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1965 1128 268 94 46 chr1 180886894 180886936 -16308496 + L1MA4 LINE L1 5940 5983 -317 5 1965 608 219 0 54 chr1 180887163 180887293 -16308139 - B1_Mur4 SINE Alu 0 150 28 5 1965 451 324 35 0 chr1 180888061 180888206 -16307226 - RSINE1 SINE B4 -13 152 3 5 1965 189 0 0 0 chr1 180888390 180888411 -16307021 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1965 352 272 259 51 chr1 180888416 180888652 -16306780 + MLT1G3 LTR MaLR 90 374 -217 6 1965 2174 98 36 0 chr1 180888673 180888980 -16306452 - ORR1A3 LTR MaLR -8 318 1 6 1965 379 310 30 23 chr1 180888980 180889092 -16306340 + MLT1G3 LTR MaLR 483 595 0 6 1965 183 129 0 0 chr1 180889745 180889776 -16305656 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1965 241 253 18 128 chr1 180889808 180889853 -16305579 + LTR78 LTR ERV1 851 894 -410 6 1965 318 26 0 0 chr1 180889853 180889892 -16305540 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1965 241 253 18 128 chr1 180889892 180889955 -16305477 + LTR78 LTR ERV1 895 947 -357 6 1965 257 194 32 0 chr1 180889957 180890019 -16305413 + (TCTG)n Simple_repeat Simple_repeat 2 65 0 6 1965 189 0 0 0 chr1 180891518 180891539 -16303893 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1965 21 36 0 0 chr1 180891625 180891653 -16303779 + AT_rich Low_complexity Low_complexity 1 28 0 6 1965 821 268 10 40 chr1 180892290 180892492 -16302940 + B3 SINE B2 1 196 -20 6 1965 654 237 107 5 chr1 180892550 180892737 -16302695 - B3 SINE B2 -6 210 5 6 1965 232 248 6 35 chr1 180892904 180893013 -16302419 - L1MDa LINE L1 -3318 3219 3116 6 1965 225 258 80 8 chr1 180893059 180893184 -16302248 - L1MDa LINE L1 -3523 3014 2881 6 1965 464 219 28 28 chr1 180893186 180893294 -16302138 - B1F SINE Alu -1 148 41 6 1965 485 254 113 7 chr1 180893303 180893562 -16301870 - L1MDa LINE L1 -3646 2891 2602 6 1965 584 277 32 83 chr1 180893582 180893612 -16301820 + CYRA11_Mm Unknown Y-chromosome 143 159 -458 6 1965 1428 161 4 13 chr1 180893612 180893839 -16301593 - URR1B DNA MER1_type 0 225 1 6 1965 255 179 0 0 chr1 180893851 180893918 -16301514 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1965 376 218 72 71 chr1 180893919 180894070 -16301362 - L1MDa LINE L1 -4058 2560 2401 6 1965 897 247 10 0 chr1 180894071 180894265 -16301167 - ID_B1 SINE B4 -17 207 12 6 1965 1084 279 138 45 chr1 180894278 180895004 -16300428 - L1MDa LINE L1 -4238 2395 1603 6 1965 924 219 184 25 chr1 180895084 180895428 -16300004 + MTB_Mm LTR MaLR 6 419 -2 6 1965 519 289 95 11 chr1 180895483 180895766 -16299666 - L1MB3 LINE L1 -114 6060 5762 6 1965 1048 273 106 34 chr1 180895754 180896453 -16298979 - L1MB3 LINE L1 -713 5164 4449 6 1965 30 45 0 0 chr1 180896544 180896588 -16298844 + AT_rich Low_complexity Low_complexity 1 44 0 6 1965 304 286 28 21 chr1 180896681 180896824 -16298608 - L1MDa LINE L1 -5037 1596 1453 6 1965 983 291 96 14 chr1 180896903 180897248 -16298184 - L1MDa LINE L1 -5355 1278 906 6 1965 796 259 19 13 chr1 180897372 180897576 -16297856 - B3A SINE B2 -15 201 2 6 1965 215 322 87 63 chr1 180899208 180899334 -16296098 - MIR3 SINE MIR -79 129 1 6 1965 256 153 46 14 chr1 180899841 180899915 -16295517 + ORR1A2 LTR MaLR 29 96 -271 6 1965 2255 60 7 1 chr1 180899882 180900209 -16295223 + ORR1A2 LTR MaLR 20 346 0 6 1965 342 0 0 0 chr1 180901358 180901396 -16294036 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1965 269 281 125 0 chr1 180901460 180901556 -16293876 - L2b LINE L2 -245 3130 3023 6 1965 966 278 14 30 chr1 180901759 180902056 -16293376 + B4 SINE B4 1 292 0 6 1965 349 179 218 0 chr1 180902126 180902204 -16293228 + MER63B DNA AcHobo 337 431 -5 6 1965 1029 234 94 135 chr1 180903247 180903618 -16291814 - MTE2b LTR MaLR -16 363 8 6 1965 1010 170 160 0 chr1 180903735 180903929 -16291503 - URR1B DNA MER1_type 0 225 1 6 1965 228 311 139 0 chr1 180906810 180906932 -16288500 + L1MC5 LINE L1 7302 7440 -521 6 1965 449 306 103 69 chr1 180907216 180907855 -16287577 + L1MEg LINE L1 2 662 -5422 6 1965 915 153 14 0 chr1 180907910 180908054 -16287378 + B1_Mur3 SINE Alu 4 149 0 6 1965 288 130 0 0 chr1 180908054 180908100 -16287332 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 6 1965 341 283 69 26 chr1 180908100 180908216 -16287216 + L1MEg LINE L1 721 841 -5243 6 1965 299 130 19 0 chr1 180908635 180908689 -16286743 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 6 1965 262 258 0 15 chr1 180909829 180909896 -16285536 + G-rich Low_complexity Low_complexity 3 68 0 6 1965 1042 308 62 35 chr1 180909903 180910385 -16285047 + Lx8 LINE L1 6979 7473 0 6 1965 1297 67 11 48 chr1 180910396 180910584 -16284848 + B2_Mm2 SINE B2 1 181 -14 6 1965 1899 151 54 2 chr1 180911665 180912039 -16283393 + MTC LTR MaLR 1 421 0 6 1965 386 312 92 28 chr1 180912133 180912450 -16282982 - L1MA6 LINE L1 -24 6276 5940 6 1965 473 47 16 0 chr1 180912729 180912793 -16282639 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 6 1965 299 103 16 49 chr1 180912821 180912882 -16282550 + Lx7 LINE L1 7615 7673 -23 6 1965 431 242 84 39 chr1 180913087 180913242 -16282190 - L1MB8 LINE L1 -115 6063 5902 6 1965 35 41 0 0 chr1 180913242 180913291 -16282141 + AT_rich Low_complexity Low_complexity 1 49 0 6 1965 355 221 38 38 chr1 180913291 180913423 -16282009 - Lx9 LINE L1 -21 7623 7492 6 1965 2012 245 67 42 chr1 180913492 180914277 -16281155 + Lx9 LINE L1 5262 6104 -1540 6 1965 232 358 65 7 chr1 180914368 180914506 -16280926 - MIR SINE MIR -87 175 30 6 1965 292 333 92 70 chr1 180915046 180915330 -16280102 - B4A SINE B4 0 292 3 6 1965 180 152 0 0 chr1 180915532 180915565 -16279867 + (TATG)n Simple_repeat Simple_repeat 1 33 0 6 1965 229 321 85 70 chr1 180915599 180915870 -16279562 - B4A SINE B4 -16 276 2 6 1965 272 297 14 0 chr1 180915997 180916071 -16279361 - ID4 SINE ID -7 76 2 6 1965 297 282 87 43 chr1 180916910 180917095 -16278337 + L1MD LINE L1 4047 4239 -1907 6 1965 317 237 92 10 chr1 180917136 180917234 -16278198 + PB1D10 SINE Alu 2 107 -10 6 1965 238 344 0 0 chr1 180917281 180917345 -16278087 + ID4 SINE ID 2 65 -18 6 1965 441 0 0 0 chr1 180917498 180917547 -16277885 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1965 447 249 98 62 chr1 180917578 180917822 -16277610 + L1MD LINE L1 4450 4702 -1444 6 1965 423 399 5 5 chr1 180918018 180918202 -16277230 - MLT1G3 LTR MaLR 0 595 412 6 1965 775 199 20 27 chr1 180918474 180918624 -16276808 - RSINE1 SINE B4 -14 151 3 6 1965 185 337 29 39 chr1 180920290 180920392 -16275040 - L2a LINE L2 -350 3076 2976 6 1965 342 0 0 0 chr1 180920635 180920673 -16274759 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1965 205 341 0 21 chr1 180921926 180922019 -16273413 + GA-rich Low_complexity Low_complexity 3 93 0 6 1965 699 46 0 0 chr1 180922968 180923055 -16272377 + (TATG)n Simple_repeat Simple_repeat 2 88 0 6 1965 328 367 40 13 chr1 180923059 180923208 -16272224 - RSINE1 SINE B4 -12 153 1 6 1965 600 143 0 0 chr1 180923273 180923385 -16272047 + (TG)n Simple_repeat Simple_repeat 1 112 0 6 1965 821 215 28 0 chr1 180923386 180923563 -16271869 - B3A SINE B2 -16 182 1 6 1965 3921 183 111 20 chr1 180923862 180924197 -16271235 + RMER19B LTR ERVK 1 242 -660 6 1965 495 0 0 0 chr1 180924197 180924252 -16271180 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1965 3921 156 148 15 chr1 180924252 180924824 -16270608 + RMER19B LTR ERVK 243 901 -1 6 1965 409 141 12 12 chr1 180925673 180925759 -16269673 + G-rich Low_complexity Low_complexity 1 86 0 6 1965 296 301 24 0 chr1 180928661 180928744 -16266688 + L3 LINE CR1 3548 3632 -857 6 1965 1056 186 50 10 chr1 180929561 180929762 -16265670 + B3 SINE B2 1 209 -7 6 1965 264 259 227 31 chr1 180930057 180930220 -16265212 + MIR3 SINE MIR 1 195 -13 6 1965 310 299 82 7 chr1 180930964 180931099 -16264333 + MLT1K LTR MaLR 380 524 -71 6 1965 226 133 21 43 chr1 180931112 180931128 -16264304 + polypyrimidine Low_complexity Low_complexity 32 47 0 6 1965 1149 123 0 0 chr1 180931128 180931307 -16264125 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 1965 226 133 21 43 chr1 180931307 180931337 -16264095 + polypyrimidine Low_complexity Low_complexity 2 31 0 6 1965 927 81 79 29 chr1 180931338 180931477 -16263955 - B1_Mus1 SINE Alu -1 147 2 6 1965 200 170 0 101 chr1 180932546 180932604 -16262828 - L2c LINE L2 -5 3421 3341 6 1965 262 156 104 0 chr1 180932670 180932766 -16262666 + GA-rich Low_complexity Low_complexity 3 108 0 6 1965 720 252 216 12 chr1 180932947 180933188 -16262244 - B4A SINE B4 -2 290 1 6 1965 288 0 0 0 chr1 180933960 180933992 -16261440 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1965 396 0 0 0 chr1 180934499 180934543 -16260889 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1965 243 0 0 0 chr1 180934931 180934958 -16260474 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1965 396 0 0 0 chr1 180935311 180935355 -16260077 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1965 1670 204 16 107 chr1 180935359 180935797 -16259635 - MTD LTR MaLR 0 419 22 6 1965 2494 154 62 96 chr1 180936893 180937445 -16257987 + RLTR20C LTR ERVK 1 533 -1 6 1965 232 111 55 18 chr1 180937618 180937673 -16257759 + A-rich Low_complexity Low_complexity 2 58 0 6 1965 290 87 0 21 chr1 180937689 180937736 -16257696 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 6 1965 360 248 168 0 chr1 180937743 180937844 -16257588 - RSINE1 SINE B4 0 165 48 6 1965 237 230 0 47 chr1 180938653 180938717 -16256715 + GA-rich Low_complexity Low_complexity 2 62 0 6 1965 288 0 0 0 chr1 180938726 180938758 -16256674 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1965 1017 301 55 4 chr1 180938796 180939053 -16256379 - B4A SINE B4 -21 271 2 6 1965 267 298 152 9 chr1 180941521 180941626 -16253806 + MLT1A1 LTR MaLR 289 408 0 6 1965 300 132 19 0 chr1 180941708 180941761 -16253671 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1965 509 182 31 12 chr1 180941768 180941929 -16253503 + (CATA)n Simple_repeat Simple_repeat 2 165 0 6 1965 686 207 0 6 chr1 180941934 180942114 -16253318 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1965 878 273 114 7 chr1 180943502 180943775 -16251657 + MTEb LTR MaLR 65 366 -13 6 1965 295 355 22 7 chr1 180944256 180944392 -16251040 - L1MB2 LINE L1 -242 5929 5792 6 1965 239 289 88 40 chr1 180944528 180944676 -16250756 - MIRb SINE MIR -82 186 32 6 1965 570 165 0 0 chr1 180945840 180945943 -16249489 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1965 250 280 67 0 chr1 180945944 180946019 -16249413 - ID_B1 SINE B4 -55 169 90 6 1965 296 316 103 26 chr1 180946095 180946212 -16249220 - L2a LINE L2 -10 3416 3291 6 1965 198 355 123 34 chr1 180946242 180946388 -16249044 - MIRb SINE MIR 0 268 110 6 1965 1014 227 79 98 chr1 180946697 180946978 -16248454 + L1MB8 LINE L1 4976 5283 -863 6 1965 409 224 153 0 chr1 180946978 180947076 -16248356 + PB1D7 SINE Alu 1 113 -7 7 1965 1014 237 59 70 chr1 180947076 180947269 -16248163 + L1MB8 LINE L1 5263 5444 -740 6 1965 746 256 97 9 chr1 180947310 180947527 -16247905 + B4A SINE B4 50 285 -7 7 1965 1542 292 86 13 chr1 180947572 180948239 -16247193 + L1MB8 LINE L1 5469 6177 -1 6 1965 286 179 54 0 chr1 180949147 180949203 -16246229 + L1MB8 LINE L1 5825 5883 -295 7 1965 183 42 0 0 chr1 180950188 180950212 -16245220 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1965 23 0 0 0 chr1 180950521 180950544 -16244888 + AT_rich Low_complexity Low_complexity 1 23 0 7 1965 1371 189 221 26 chr1 180950644 180951024 -16244408 + RMER15 LTR ERVL 29 482 -93 7 1965 323 240 47 19 chr1 180951387 180951493 -16243939 + ORR1E LTR MaLR 28 136 -223 7 1965 7767 75 4 18 chr1 180951861 180953612 -16241820 + L1_Mus1 LINE L1 4851 6567 0 7 1965 318 341 97 7 chr1 180953618 180953896 -16241536 - L1MD3 LINE L1 -16 7979 7677 7 1965 265 189 12 98 chr1 180955434 180955516 -16239916 - ID SINE ID -148 76 2 7 1965 1105 89 14 0 chr1 180955911 180956057 -16239375 + B1_Mur4 SINE Alu 1 148 -2 7 1965 30 0 0 0 chr1 180957246 180957276 -16238156 + AT_rich Low_complexity Low_complexity 1 30 0 7 1965 264 59 0 0 chr1 180957964 180957998 -16237434 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 7 1965 24522 164 24 10 chr1 180958711 180959303 -16236129 + MERVL_2A-int LTR ERVL 1146 1743 -4018 7 1965 198 71 0 0 chr1 180959303 180959331 -16236101 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1965 24522 164 24 10 chr1 180959331 180962794 -16232638 + MERVL_2A-int LTR ERVL 1744 5257 -504 7 1965 636 135 46 31 chr1 180962787 180962917 -16232515 + MERVL_2A-int LTR ERVL 5627 5758 -3 7 1965 788 167 0 22 chr1 180962918 180963053 -16232379 + MT2A LTR ERVL 1 132 -401 7 1965 193 279 143 32 chr1 180963295 180963358 -16232074 - L2b LINE L2 -27 3348 3279 7 1965 393 309 107 92 chr1 180963736 180964082 -16231350 + HAL1 LINE L1 822 1172 -1335 7 1965 375 337 59 0 chr1 180964621 180964722 -16230710 - ID_B1 SINE B4 -37 187 81 7 1965 504 0 0 0 chr1 180964730 180964786 -16230646 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1965 324 0 0 0 chr1 180964786 180964821 -16230611 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1965 477 340 93 45 chr1 180965763 180966139 -16229293 - L3 LINE CR1 -776 3713 3320 7 1965 186 227 0 0 chr1 180967219 180967263 -16228169 + GA-rich Low_complexity Low_complexity 4 47 0 7 1965 263 196 36 0 chr1 180967438 180967494 -16227938 - ORR1E LTR MaLR -300 59 2 7 1965 207 0 0 0 chr1 180968571 180968594 -16226838 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1965 676 220 104 91 chr1 180969517 180969737 -16225695 + MLT1B LTR MaLR 4 226 -164 7 1965 23 0 0 0 chr1 180970971 180970994 -16224438 + AT_rich Low_complexity Low_complexity 1 23 0 7 1965 343 276 20 39 chr1 180973131 180973233 -16222199 + PB1D10 SINE Alu 10 109 -8 7 1965 653 176 50 0 chr1 180974655 180974774 -16220658 + B1_Mus2 SINE Alu 3 127 -20 7 1965 384 22 0 0 chr1 180974795 180974840 -16220592 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 7 1965 3038 115 0 7 chr1 180974840 180975260 -16220172 + Lx3B LINE L1 6379 6798 -175 7 1965 426 20 0 0 chr1 180975260 180975311 -16220121 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 7 1965 383 272 9 19 chr1 180975476 180975581 -16219851 - PB1 SINE Alu -23 104 1 7 1965 2818 164 26 35 chr1 180977903 180978440 -16216992 + RLTR20B2 LTR ERVK 1 532 -28 7 1965 304 377 65 26 chr1 180978982 180979292 -16216140 - L3 LINE CR1 -549 3940 3619 7 1965 917 259 50 36 chr1 180980537 180980838 -16214594 + L1MB8 LINE L1 5296 5600 -578 7 1965 701 248 137 0 chr1 180980973 180981207 -16214225 + L1MB8 LINE L1 5627 5892 -286 7 1965 380 290 187 0 chr1 180981211 180981318 -16214114 + RSINE1 SINE B4 3 129 -36 7 1965 890 248 28 35 chr1 180981375 180981655 -16213777 + L1MB8 LINE L1 5895 6172 -6 7 1965 749 250 38 14 chr1 180981708 180981919 -16213513 + B3 SINE B2 1 216 0 7 1965 197 77 0 49 chr1 180982726 180982767 -16212665 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 7 1965 383 292 43 14 chr1 180982897 180983036 -16212396 - MER3 DNA MER1_type -1 208 66 7 1965 1287 78 66 6 chr1 180983507 180983688 -16211744 + B2_Mm2 SINE B2 3 194 -1 7 1965 1128 72 0 0 chr1 180983831 180983969 -16211463 + B1_Mus1 SINE Alu 2 139 -9 7 1965 1011 130 166 35 chr1 180984106 180984305 -16211127 - URR1B DNA MER1_type 0 225 1 7 1965 752 309 56 115 chr1 180984338 180984542 -16210890 + MLT1D LTR MaLR 3 200 -305 7 1965 324 0 0 0 chr1 180984542 180984578 -16210854 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1965 752 309 56 115 chr1 180984578 180984870 -16210562 + MLT1D LTR MaLR 201 470 -35 7 1965 213 274 94 12 chr1 180984965 180985050 -16210382 - L2a LINE L2 0 3426 3335 7 1965 189 0 0 0 chr1 180985706 180985727 -16209705 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 7 1965 366 279 0 0 chr1 180986490 180986569 -16208863 + ID4 SINE ID 2 80 -3 7 1965 444 302 48 82 chr1 180986701 180987127 -16208305 + MT2A LTR ERVL 76 601 0 7 1965 3368 48 2 5 chr1 180987482 180987883 -16207549 + MTB LTR MaLR 1 400 0 7 1965 225 0 0 0 chr1 180988850 180988875 -16206557 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1965 186 344 156 0 chr1 180990579 180990675 -16204757 + L3b LINE CR1 186 296 -186 7 1965 192 152 0 0 chr1 180991069 180991102 -16204330 + CT-rich Low_complexity Low_complexity 2 34 0 7 1965 557 185 0 22 chr1 180993208 180993390 -16202042 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1965 204 67 0 0 chr1 180993677 180993707 -16201725 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 7 1965 297 0 0 0 chr1 180993708 180993741 -16201691 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1965 747 76 240 16 chr1 180993741 180993862 -16201570 - B1_Mus1 SINE Alu 0 148 1 7 1965 636 246 18 29 chr1 180993872 180994063 -16201369 - B3A SINE B2 -8 187 2 7 1965 255 31 0 0 chr1 180994148 180994180 -16201252 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 7 1965 4556 274 53 16 chr1 180995665 180996971 -16198461 + Lx8 LINE L1 6100 7453 -20 7 1965 193 280 80 0 chr1 180997274 180997324 -16198108 + L3 LINE CR1 3331 3384 -1105 7 1965 393 320 71 6 chr1 180997503 180997685 -16197747 - MIRb SINE MIR -44 224 31 7 1965 341 349 61 35 chr1 180997762 180998023 -16197409 + L3 LINE CR1 4169 4436 -53 7 1965 666 261 7 21 chr1 180998103 180998248 -16197184 + ID_B1 SINE B4 82 224 0 7 1965 197 345 16 70 chr1 180998875 180999003 -16196429 - L2b LINE L2 -241 3134 3014 7 1965 1462 222 79 26 chr1 180999584 181000000 -16195432 + BGLII_A LTR ERVK 1 438 -7 7 1965 1129 154 40 64 chr1 181000000 181000250 -16195182 + RLTR31_Mm LTR ERVK 318 561 0 1 1965 25 0 0 0 chr1 181000490 181000515 -16194917 + AT_rich Low_complexity Low_complexity 1 25 0 2 1965 3219 170 38 35 chr1 181000899 181001564 -16193868 + MYSERV6-int LTR ERVK 8292 8958 -1 3 1965 1679 184 9 20 chr1 181001565 181001909 -16193523 + RLTR15 LTR ERVK 1 340 -19 3 1965 776 229 27 28 chr1 181002210 181002444 -16192988 + MTD-int LTR MaLR 2 300 -119 4 1965 367 216 75 146 chr1 181002533 181002745 -16192687 + MTD LTR MaLR 174 405 -14 5 1965 489 256 58 78 chr1 181004800 181004991 -16190441 - RLTR23 LTR ERV1 0 430 244 6 1965 221 276 124 84 chr1 181005649 181005791 -16189641 + B4 SINE B4 1 147 -145 7 1965 399 269 10 31 chr1 181005785 181005881 -16189551 + RSINE1 SINE B4 71 164 -1 8 1965 393 188 0 0 chr1 181005911 181005996 -16189436 + GA-rich Low_complexity Low_complexity 3 87 0 9 1965 226 364 136 0 chr1 181006065 181006175 -16189257 + LTR84a LTR ERVL 602 726 -31 1 1965 578 242 27 14 chr1 181006171 181006334 -16189098 - ID_B1 SINE B4 -35 257 82 1 1965 349 303 76 38 chr1 181007100 181007258 -16188174 + RSINE1 SINE B4 2 165 0 1 1965 463 332 103 33 chr1 181007285 181007615 -16187817 + L1MC LINE L1 4880 5232 -914 1 1965 344 310 94 56 chr1 181007629 181008022 -16187410 + L1M5 LINE L1 5258 5665 -514 1 1965 741 277 91 111 chr1 181008068 181008475 -16186957 + L1MA6 LINE L1 5582 5968 -332 1 1965 254 304 0 48 chr1 181008475 181008558 -16186874 + ID4 SINE ID 2 80 -3 1 1965 741 277 91 111 chr1 181008558 181008763 -16186669 + L1MA6 LINE L1 5969 6182 -118 1 1965 1720 251 15 18 chr1 181008773 181009167 -16186265 + MTD LTR MaLR 13 405 -14 1 1965 3328 50 18 2 chr1 181009818 181010219 -16185213 - MTB_Mm LTR MaLR 0 407 1 1 1966 632 267 0 0 chr1 181010692 181010812 -16184620 + RSINE1 SINE B4 2 121 -44 1 1966 503 16 0 15 chr1 181010816 181010881 -16184551 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1966 216 188 14 28 chr1 181012438 181012509 -16182923 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 2 1966 309 89 0 0 chr1 181012663 181012708 -16182724 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1966 954 293 10 21 chr1 181012722 181013011 -16182421 - B4A SINE B4 -6 286 1 2 1966 861 265 105 23 chr1 181013958 181014275 -16181157 + MLT2B4 LTR ERVL 105 494 -62 2 1966 1339 192 157 30 chr1 181014798 181015130 -16180302 - ORR1D1 LTR MaLR 0 374 1 2 1966 250 267 0 16 chr1 181015131 181015192 -16180240 + ID_B1 SINE B4 81 140 -84 2 1966 277 192 19 0 chr1 181015144 181015196 -16180236 + PB1 SINE Alu 13 65 -62 2 1966 700 214 14 14 chr1 181015354 181015496 -16179936 - B1_Mur1 SINE Alu 0 149 8 2 1966 525 265 34 50 chr1 181015496 181015533 -16179899 - ID_B1 SINE B4 0 224 49 2 1966 342 264 164 74 chr1 181017092 181017391 -16178041 + L2a LINE L2 2570 2895 -524 3 1966 459 0 0 0 chr1 181017493 181017544 -16177888 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1966 383 300 42 61 chr1 181017810 181018023 -16177409 + L2a LINE L2 3076 3284 -142 3 1966 324 143 0 0 chr1 181019266 181019322 -16176110 + (AGGGGG)n Simple_repeat Simple_repeat 6 61 0 3 1966 267 302 70 13 chr1 181021014 181021039 -16174393 - ID4 SINE ID -58 94 26 3 1966 274 262 66 0 chr1 181021039 181021100 -16174332 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 3 1966 381 250 9 88 chr1 181021163 181021277 -16174155 + MTEa LTR MaLR 5 109 -270 3 1966 21 0 0 0 chr1 181021304 181021325 -16174107 + AT_rich Low_complexity Low_complexity 1 21 0 3 1966 267 322 132 31 chr1 181023630 181023858 -16171574 - MIRb SINE MIR -14 254 6 3 1966 1655 261 67 22 chr1 181025368 181025862 -16169570 + RMER5 LTR ERV1 13 528 -6 3 1966 352 306 232 48 chr1 181026326 181026808 -16168624 - L2 LINE L2 -359 3060 2472 3 1966 672 48 0 0 chr1 181026808 181026892 -16168540 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1966 352 306 232 48 chr1 181026892 181027020 -16168412 - L2 LINE L2 -948 2471 2337 3 1966 297 75 0 0 chr1 181027892 181027932 -16167500 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 1966 969 128 0 51 chr1 181028161 181028317 -16167115 + B1_Mur3 SINE Alu 1 148 -1 4 1966 300 254 29 29 chr1 181029931 181030000 -16165432 + RSINE1 SINE B4 57 125 -40 4 1966 222 171 0 0 chr1 181030077 181030118 -16165314 + (CGA)n Simple_repeat Simple_repeat 2 42 0 4 1966 370 268 0 10 chr1 181031898 181031996 -16163436 + L1MA8 LINE L1 6188 6284 -7 4 1966 244 323 118 0 chr1 181032043 181032136 -16163296 + Charlie21a DNA MER1_type 427 530 -683 4 1966 612 184 10 0 chr1 181032244 181032347 -16163085 - RSINE1 SINE B4 -59 106 3 4 1966 273 290 20 10 chr1 181032372 181032473 -16162959 + Charlie21a DNA MER1_type 639 740 -473 4 1966 388 295 9 0 chr1 181032487 181032592 -16162840 - PB1D10 SINE Alu -7 110 5 4 1966 281 299 31 100 chr1 181034885 181035015 -16160417 + PB1 SINE Alu 7 127 0 4 1966 309 260 5 53 chr1 181035022 181035109 -16160323 + ID4_ SINE ID 1 86 -66 5 1966 360 0 0 0 chr1 181037330 181037370 -16158062 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 1966 450 0 0 0 chr1 181037372 181037422 -16158010 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 5 1966 23 0 0 0 chr1 181038165 181038188 -16157244 + AT_rich Low_complexity Low_complexity 1 23 0 5 1966 2641 73 0 18 chr1 181040070 181040403 -16155029 - ORR1A2 LTR MaLR 0 327 1 5 1966 538 210 335 6 chr1 181040431 181040589 -16154843 - B3 SINE B2 -6 210 1 5 1966 232 274 32 16 chr1 181041551 181041614 -16153818 - MLT2E LTR ERVL -244 384 321 5 1966 220 296 76 46 chr1 181043664 181043795 -16151637 + L2a LINE L2 3100 3234 -141 5 1966 241 206 54 81 chr1 181043962 181044036 -16151396 + L3 LINE CR1 4329 4400 -89 5 1966 2147 126 73 6 chr1 181044117 181044461 -16150971 + ORR1B2 LTR MaLR 1 367 0 5 1966 414 79 0 0 chr1 181045602 181045665 -16149767 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1966 261 0 0 0 chr1 181045665 181045693 -16149739 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1966 265 293 72 12 chr1 181046306 181046389 -16149043 + L2a LINE L2 3338 3425 -1 5 1966 228 261 54 54 chr1 181046474 181046567 -16148865 - MLT1A1 LTR MaLR 0 408 316 6 1966 736 291 177 78 chr1 181047651 181048255 -16147177 + L1MCa LINE L1 117 780 -5728 6 1966 506 275 20 26 chr1 181048311 181048464 -16146968 - RSINE1 SINE B4 -12 153 2 6 1966 762 286 126 9 chr1 181048515 181048953 -16146479 + L1MCa LINE L1 993 1481 -5027 6 1966 234 408 0 0 chr1 181049968 181050071 -16145361 + MIRb SINE MIR 72 174 -94 6 1966 237 238 32 158 chr1 181051205 181051300 -16144132 + L2b LINE L2 3288 3376 -11 6 1966 289 333 97 13 chr1 181051349 181051504 -16143928 - MIRb SINE MIR -45 223 56 6 1966 381 122 0 0 chr1 181052614 181052688 -16142744 + (CAGA)n Simple_repeat Simple_repeat 1 74 0 6 1966 462 275 0 0 chr1 181053472 181053563 -16141869 - PB1 SINE Alu -8 119 29 6 1966 285 98 0 0 chr1 181054721 181054762 -16140670 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 7 1966 288 77 0 0 chr1 181054939 181054978 -16140454 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 7 1966 288 0 0 0 chr1 181055068 181055100 -16140332 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 7 1966 202 257 176 10 chr1 181055296 181055398 -16140034 + L2b LINE L2 3228 3346 -29 7 1966 618 14 0 0 chr1 181055853 181055924 -16139508 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1966 811 154 0 42 chr1 181055924 181056066 -16139366 - B1_Mur4 SINE Alu -5 145 10 7 1966 379 218 0 141 chr1 181055970 181056098 -16139334 - MT2B LTR ERVL -345 256 147 7 1966 263 300 62 77 chr1 181056053 181056183 -16139249 + MER58B DNA MER1_type 213 340 -1 7 1966 198 0 0 0 chr1 181058116 181058138 -16137294 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1966 275 327 19 0 chr1 181058809 181058913 -16136519 - MER5A DNA MER1_type -49 140 35 7 1966 819 294 63 33 chr1 181060759 181061157 -16134275 + BGLII_B LTR ERVK 5 414 -27 8 1966 1392 146 14 0 chr1 181062328 181062548 -16132884 - URR1A DNA MER1_type -3 223 1 8 1966 4286 148 128 16 chr1 181063005 181063816 -16131616 + RMER19B LTR ERVK 1 902 0 8 1966 252 0 0 0 chr1 181064476 181064504 -16130928 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 8 1966 302 332 112 29 chr1 181065080 181065285 -16130147 + MLT1D LTR MaLR 269 490 -15 8 1966 324 94 0 0 chr1 181065430 181065483 -16129949 + (CAAAAA)n Simple_repeat Simple_repeat 1 53 0 8 1966 791 268 81 45 chr1 181065496 181065805 -16129627 + RMER1C Other Other 1022 1341 -1 8 1966 231 36 0 0 chr1 181065856 181065884 -16129548 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1966 602 216 0 8 chr1 181066283 181066400 -16129032 + B1F SINE Alu 34 149 0 8 1966 391 243 38 75 chr1 181067394 181067554 -16127878 + L1M3 LINE L1 5430 5583 -597 8 1966 1193 148 36 0 chr1 181067783 181067979 -16127453 + B3 SINE B2 1 203 -13 9 1966 1697 292 54 27 chr1 181067999 181068761 -16126671 + Lx7 LINE L1 6693 7471 -2 9 1966 2617 109 66 2 chr1 181068769 181069165 -16126267 - MTC LTR MaLR 0 421 1 9 1966 192 313 129 24 chr1 181069176 181069346 -16126086 - MIR SINE MIR -43 219 32 9 1966 261 0 0 0 chr1 181069553 181069582 -16125850 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1966 286 219 34 6 chr1 181070057 181070236 -16125196 + GA-rich Low_complexity Low_complexity 1 183 0 9 1966 607 193 17 17 chr1 181070210 181070389 -16125043 + G-rich Low_complexity Low_complexity 2 180 0 9 1966 284 213 27 0 chr1 181070406 181070481 -16124951 + GA-rich Low_complexity Low_complexity 1 77 0 9 1966 568 65 0 0 chr1 181072923 181073000 -16122432 + B1_Mus2 SINE Alu 1 77 -70 9 1966 273 230 62 94 chr1 181072925 181073021 -16122411 + MT2B2 LTR ERVL 167 259 -325 9 1966 396 248 25 58 chr1 181073976 181074096 -16121336 + PB1D10 SINE Alu 2 117 0 1 1966 261 0 0 0 chr1 181074728 181074757 -16120675 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1966 408 55 0 0 chr1 181074757 181074812 -16120620 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1966 214 276 68 48 chr1 181075723 181075826 -16119606 + PB1 SINE Alu 23 127 0 1 1966 279 0 0 0 chr1 181077713 181077744 -16117688 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1966 327 25 0 0 chr1 181080412 181080452 -16114980 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1966 1396 148 0 5 chr1 181080819 181081029 -16114403 + B3 SINE B2 1 209 -7 1 1966 598 266 137 15 chr1 181082353 181082624 -16112808 - L1MB2 LINE L1 -282 5889 5586 1 1966 247 250 0 18 chr1 181083441 181083498 -16111934 + C-rich Low_complexity Low_complexity 3 58 0 1 1966 238 207 17 0 chr1 181083498 181083556 -16111876 - tRNA-Ala-GCY_ tRNA tRNA -15 60 2 1 1966 420 271 114 17 chr1 181084605 181084841 -16110591 - L1MC4 LINE L1 -1032 7010 6752 1 1966 379 192 45 63 chr1 181085195 181085306 -16110126 + PB1D10 SINE Alu 8 116 -1 1 1966 189 0 0 0 chr1 181085558 181085579 -16109853 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1966 651 73 254 0 chr1 181085580 181085690 -16109742 - B2_Mm2 SINE B2 -56 139 2 1 1966 954 170 0 4 chr1 181085886 181086351 -16109081 + (TG)n Simple_repeat Simple_repeat 1 463 0 1 1966 649 255 6 31 chr1 181086355 181086517 -16108915 - RSINE1 SINE B4 0 165 8 1 1966 21 0 0 0 chr1 181087056 181087077 -16108355 + AT_rich Low_complexity Low_complexity 1 21 0 1 1966 228 352 24 16 chr1 181087901 181088025 -16107407 - MIR SINE MIR -15 247 123 1 1966 386 246 60 174 chr1 181088134 181088151 -16107281 - B1F SINE Alu 0 149 137 1 1966 405 0 0 0 chr1 181088151 181088196 -16107236 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1966 412 282 9 9 chr1 181088201 181088312 -16107120 - ID_B1 SINE B4 -13 211 101 1 1966 386 246 60 174 chr1 181088312 181088345 -16107087 - B1F SINE Alu -13 131 2 1 1966 209 185 0 69 chr1 181088347 181088405 -16107027 + T-rich Low_complexity Low_complexity 4 57 0 1 1966 249 320 70 23 chr1 181090029 181090157 -16105275 + MIRb SINE MIR 11 144 -124 1 1966 472 292 54 7 chr1 181090357 181090505 -16104927 - ID_B1 SINE B4 -53 171 17 1 1966 540 65 0 0 chr1 181091348 181091425 -16104007 + (GGGA)n Simple_repeat Simple_repeat 2 78 0 1 1966 213 39 0 0 chr1 181095353 181095379 -16100053 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 1 1966 253 333 43 72 chr1 181096122 181096261 -16099171 + MIRb SINE MIR 42 176 -92 1 1966 268 292 75 23 chr1 181096621 181096754 -16098678 + L1MD1 LINE L1 5598 5737 -505 1 1966 292 265 168 43 chr1 181096760 181097064 -16098368 - RMER10A LTR ERVL -21 421 80 1 1966 652 300 75 62 chr1 181097091 181097493 -16097939 + L1MD1 LINE L1 5733 6139 -103 1 1966 444 307 198 28 chr1 181098095 181098343 -16097089 + B4A SINE B4 3 292 0 1 1966 324 0 0 0 chr1 181098351 181098387 -16097045 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1966 606 197 80 0 chr1 181099660 181099797 -16095635 + B1_Mur3 SINE Alu 1 148 -1 1 1966 183 264 0 0 chr1 181099799 181099852 -16095580 + A-rich Low_complexity Low_complexity 1 53 0 1 1966 251 348 25 19 chr1 181100083 181100241 -16095191 - L1MC LINE L1 -2127 5755 5597 1 1966 283 78 0 38 chr1 181100288 181100325 -16095107 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1966 1126 75 7 0 chr1 181100325 181100471 -16094961 - B1_Mus2 SINE Alu 0 147 1 1 1966 283 78 0 38 chr1 181100471 181100486 -16094946 + (TTTG)n Simple_repeat Simple_repeat 2 16 0 1 1966 377 116 0 14 chr1 181100487 181100557 -16094875 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 1 1966 240 250 72 0 chr1 181102284 181102376 -16093056 - MTE2a LTR MaLR -7 352 270 1 1966 216 0 0 0 chr1 181103954 181103978 -16091454 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1966 609 144 29 0 chr1 181105310 181105405 -16090027 - RLTR13D1 LTR ERVK 0 806 709 1 1966 603 128 20 0 chr1 181105405 181105507 -16089925 - RLTR13D6 LTR ERVK 0 902 799 1 1966 359 199 14 0 chr1 181105766 181105845 -16089587 + B1_Mur2 SINE Alu 34 119 -1 1 1966 495 0 0 0 chr1 181106219 181106274 -16089158 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1966 277 159 228 43 chr1 181106671 181106763 -16088669 - PB1D9 SINE Alu 0 120 12 1 1966 22 0 0 0 chr1 181107255 181107277 -16088155 + AT_rich Low_complexity Low_complexity 1 22 0 1 1966 404 200 31 21 chr1 181109092 181109189 -16086243 + PB1D10 SINE Alu 13 110 -7 1 1966 182 359 33 0 chr1 181109532 181109624 -16085808 + MIRb SINE MIR 111 205 -63 1 1966 3643 28 30 69 chr1 181109837 181110331 -16085101 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1966 213 302 0 0 chr1 181110655 181110708 -16084724 + CT-rich Low_complexity Low_complexity 4 56 0 1 1966 378 0 0 0 chr1 181110711 181110753 -16084679 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1 1966 354 323 8 30 chr1 181110770 181110901 -16084531 - ID_B1 SINE B4 -11 213 86 1 1966 415 308 9 0 chr1 181110798 181110905 -16084527 - B1F1 SINE Alu -41 108 1 1 1966 267 31 0 0 chr1 181111418 181111450 -16083982 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1966 216 86 0 0 chr1 181111469 181111504 -16083928 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1966 530 312 96 34 chr1 181111630 181112048 -16083384 + L1M2 LINE L1 4802 5245 -898 1 1966 843 86 0 0 chr1 181112070 181112187 -16083245 + (GGGAGA)n Simple_repeat Simple_repeat 3 119 0 1 1966 888 82 0 0 chr1 181112559 181112681 -16082751 + (GA)n Simple_repeat Simple_repeat 2 123 0 1 1966 275 212 229 29 chr1 181114362 181114532 -16080900 + L1ME1 LINE L1 4478 4681 -1465 1 1966 252 256 24 0 chr1 181114805 181114887 -16080545 + L1ME1 LINE L1 4966 5049 -1097 1 1966 306 0 0 0 chr1 181115515 181115549 -16079883 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1966 2269 178 2 24 chr1 181115654 181116068 -16079364 - MTB_Mm LTR MaLR 0 407 3 1 1966 254 325 110 20 chr1 181116085 181116484 -16078948 + L1ME1 LINE L1 5265 5699 -465 1 1966 1229 54 0 0 chr1 181116565 181116713 -16078719 + B1_Mus1 SINE Alu 1 148 0 1 1966 473 331 19 31 chr1 181117041 181117203 -16078229 + RSINE1 SINE B4 6 165 0 1 1966 338 340 129 10 chr1 181117284 181117486 -16077946 + Tigger7 DNA MER2_type 102 327 -2164 1 1966 292 283 123 0 chr1 181117494 181117632 -16077800 + L1ME1 LINE L1 6016 6170 -9 1 1966 223 346 60 8 chr1 181118208 181118342 -16077090 + MIR SINE MIR 108 248 -14 1 1966 786 178 12 30 chr1 181118544 181118712 -16076720 + L1MC1 LINE L1 5362 5526 -807 1 1966 1258 313 98 27 chr1 181118964 181119667 -16075765 + L1MC1 LINE L1 5580 6332 -1 1 1966 189 0 0 0 chr1 181120368 181120389 -16075043 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1966 1416 65 32 0 chr1 181121854 181122039 -16073393 - B2_Mm1t SINE B2 -1 192 2 1 1966 393 346 118 17 chr1 181122981 181123269 -16072163 - MER68 LTR ERVL 0 563 247 1 1966 283 310 84 58 chr1 181123312 181123466 -16071966 - MER68 LTR ERVL -394 169 12 1 1966 516 209 18 0 chr1 181123561 181123671 -16071761 - B1_Mur2 SINE Alu -1 148 37 1 1966 754 227 177 21 chr1 181124466 181124754 -16070678 - ORR1D2 LTR MaLR -20 350 18 1 1966 667 289 84 16 chr1 181124778 181125190 -16070242 - L1MA4 LINE L1 -278 6022 5549 1 1966 282 294 80 35 chr1 181126324 181126437 -16068995 + MTE2b LTR MaLR 253 370 -9 1 1966 659 215 109 33 chr1 181126678 181126861 -16068571 - B3A SINE B2 0 198 2 1 1966 519 214 78 23 chr1 181126985 181127114 -16068318 - RSINE1 SINE B4 -13 152 17 1 1966 1211 61 0 0 chr1 181129232 181129379 -16066053 + B1_Mus2 SINE Alu 1 147 0 1 1966 204 40 0 0 chr1 181129379 181129404 -16066028 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1966 213 39 0 0 chr1 181129497 181129523 -16065909 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1 1966 180 77 0 0 chr1 181129545 181129571 -16065861 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1 1966 264 30 0 0 chr1 181129706 181129739 -16065693 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1966 271 233 40 27 chr1 181129972 181130047 -16065385 - ID4_ SINE ID -5 78 3 1 1966 216 0 0 0 chr1 181131119 181131143 -16064289 + (G)n Simple_repeat Simple_repeat 1 24 0 1 1966 306 123 0 0 chr1 181131635 181131692 -16063740 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1 1966 276 91 0 0 chr1 181131753 181131797 -16063635 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 1 1966 464 291 26 0 chr1 181131799 181131916 -16063516 + ID_B1 SINE B4 88 207 -17 1 1966 261 284 14 0 chr1 181131924 181131998 -16063434 + GA-rich Low_complexity Low_complexity 4 78 0 1 1966 396 0 0 0 chr1 181132137 181132181 -16063251 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1966 347 261 43 0 chr1 181132282 181132374 -16063058 + B3A SINE B2 3 98 -100 1 1966 252 248 129 26 chr1 181132376 181132389 -16063043 - MLT2B5 LTR ERVL -398 203 76 1 1966 274 275 19 117 chr1 181132389 181132492 -16062940 - MTEa LTR MaLR -219 160 68 1 1966 251 340 30 0 chr1 181132899 181132999 -16062433 + L1MEf LINE L1 556 658 -5542 1 1966 704 238 118 42 chr1 181133558 181133821 -16061611 - Lx8 LINE L1 -5 7468 7186 1 1966 1978 283 81 46 chr1 181133865 181134598 -16060834 + Lx8 LINE L1 6322 7079 -394 1 1966 420 20 0 0 chr1 181135171 181135220 -16060212 + (CCA)n Simple_repeat Simple_repeat 3 51 0 1 1966 584 216 107 10 chr1 181135792 181135988 -16059444 + B3 SINE B2 1 215 -1 1 1966 29 0 0 0 chr1 181136409 181136438 -16058994 + AT_rich Low_complexity Low_complexity 1 29 0 1 1966 226 282 98 61 chr1 181137433 181137565 -16057867 + MER34 LTR ERV1 4 140 -402 1 1966 343 229 84 0 chr1 181137796 181137879 -16057553 + MER34 LTR ERV1 380 469 -73 1 1966 495 0 0 0 chr1 181137944 181137999 -16057433 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1966 261 296 135 25 chr1 181138005 181138168 -16057264 + LTR82B Low_complexity ERVL 203 383 -447 1 1966 276 312 90 42 chr1 181138406 181138573 -16056859 + LTR82B Low_complexity ERVL 513 687 -143 1 1966 276 185 0 0 chr1 181139110 181139164 -16056268 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1966 652 10 0 49 chr1 181139743 181139845 -16055587 + (TCCCC)n Simple_repeat Simple_repeat 2 98 0 2 1966 262 222 16 0 chr1 181139846 181139909 -16055523 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 2 1966 225 208 0 19 chr1 181141138 181141192 -16054240 + MLT1A1 LTR MaLR 356 408 0 2 1967 207 320 26 13 chr1 181143944 181144020 -16051412 - L2c LINE L2 -2 3385 3309 2 1967 275 349 0 44 chr1 181144598 181144712 -16050720 + RSINE1 SINE B4 57 165 0 2 1967 21 0 0 0 chr1 181146523 181146544 -16048888 + AT_rich Low_complexity Low_complexity 1 21 0 2 1967 285 309 0 0 chr1 181146631 181146712 -16048720 + PB1D10 SINE Alu 25 105 -12 2 1967 53 17 0 0 chr1 181148032 181148092 -16047340 + AT_rich Low_complexity Low_complexity 1 60 0 2 1967 1677 31 0 0 chr1 181149302 181149493 -16045939 + B2_Mm1a SINE B2 2 192 -1 2 1967 251 278 121 20 chr1 181149566 181149665 -16045767 + PB1 SINE Alu 5 113 -14 2 1967 741 169 25 7 chr1 181149665 181149961 -16045471 + (CATA)n Simple_repeat Simple_repeat 1 301 0 2 1967 21 57 0 0 chr1 181149971 181150006 -16045426 + AT_rich Low_complexity Low_complexity 1 35 0 2 1967 190 125 42 0 chr1 181150091 181150139 -16045293 + GA-rich Low_complexity Low_complexity 3 52 0 2 1967 381 289 94 40 chr1 181150371 181150573 -16044859 - MER31A LTR ERV1 -203 282 70 2 1967 414 233 19 10 chr1 181150588 181150692 -16044740 + PB1D10 SINE Alu 11 115 -2 2 1967 369 0 0 0 chr1 181150873 181150914 -16044518 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1967 180 77 0 0 chr1 181151070 181151096 -16044336 + (G)n Simple_repeat Simple_repeat 1 26 0 2 1967 707 87 10 0 chr1 181151989 181152093 -16043339 + (AGGGGG)n Simple_repeat Simple_repeat 5 109 0 2 1967 261 320 61 75 chr1 181152340 181152634 -16042798 - B4A SINE B4 0 292 3 2 1967 251 288 55 0 chr1 181152798 181152871 -16042561 - ID2 SINE ID 0 83 7 2 1967 383 75 30 0 chr1 181152912 181152979 -16042453 + (TGAA)n Simple_repeat Simple_repeat 2 70 0 2 1967 182 150 0 24 chr1 181153641 181153682 -16041750 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1967 243 296 184 9 chr1 181154226 181154335 -16041097 + B3A SINE B2 4 131 -67 2 1967 929 148 229 27 chr1 181154686 181154874 -16040558 - URR1A DNA MER1_type 0 226 1 2 1967 194 299 26 0 chr1 181154898 181154975 -16040457 + L2c LINE L2 3248 3326 -61 2 1967 288 281 0 0 chr1 181157430 181157526 -16037906 + (CAGAG)n Simple_repeat Simple_repeat 1 96 0 2 1967 208 77 51 0 chr1 181158243 181158282 -16037150 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 2 1967 239 216 25 75 chr1 181158403 181158483 -16036949 - ID SINE ID -147 77 2 2 1967 929 181 96 0 chr1 181158726 181158925 -16036507 + ID_B1 SINE B4 2 219 -5 2 1967 403 252 211 30 chr1 181159207 181159477 -16035955 + L1MEc LINE L1 47 365 -6035 2 1967 318 191 0 16 chr1 181160462 181160526 -16034906 + B3 SINE B2 54 116 -100 2 1967 1713 161 35 88 chr1 181160530 181160904 -16034528 - ORR1B2 LTR MaLR -8 359 6 2 1967 432 214 19 19 chr1 181160909 181161014 -16034418 + B3 SINE B2 112 216 0 2 1967 387 0 0 0 chr1 181162814 181162857 -16032575 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1967 229 174 22 0 chr1 181163228 181163274 -16032158 + ID4 SINE ID 28 74 -9 2 1967 295 212 50 0 chr1 181163783 181163863 -16031569 - B1F1 SINE Alu -63 86 3 2 1967 1171 159 111 32 chr1 181163876 181164156 -16031276 - Lx9 LINE L1 0 7644 7343 2 1967 1121 199 42 8 chr1 181164153 181164391 -16031041 + Lx9 LINE L1 6698 6943 -701 2 1967 2354 42 14 0 chr1 181164445 181164733 -16030699 - L1_Mus1 LINE L1 -1 6566 6275 2 1967 2356 62 205 0 chr1 181164808 181165149 -16030283 + RLTR10A LTR ERVK 1 411 0 2 1967 1511 186 83 50 chr1 181165234 181165596 -16029836 - ORR1D1 LTR MaLR 0 374 1 2 1967 1044 150 16 27 chr1 181165661 181165846 -16029586 - B2_Mm2 SINE B2 -12 183 1 2 1967 234 337 49 10 chr1 181165882 181165984 -16029448 - MER34 LTR ERV1 -52 490 385 2 1967 198 370 65 29 chr1 181166762 181166901 -16028531 + L2b LINE L2 3225 3368 -7 2 1967 360 0 0 0 chr1 181169595 181169635 -16025797 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1967 189 0 0 0 chr1 181169670 181169691 -16025741 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1967 672 284 101 38 chr1 181169752 181170019 -16025413 + B4A SINE B4 5 288 -4 2 1967 204 120 39 20 chr1 181170035 181170086 -16025346 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1967 579 335 95 26 chr1 181171337 181171683 -16023749 + MER20B DNA MER1_type 146 515 -268 2 1967 273 279 140 0 chr1 181171881 181172017 -16023415 + MER20B DNA MER1_type 627 781 -2 2 1967 364 279 50 22 chr1 181172741 181172880 -16022552 + L2a LINE L2 3254 3396 -30 2 1967 505 312 30 70 chr1 181176129 181176329 -16019103 - B3A SINE B2 -5 193 2 2 1967 526 232 71 42 chr1 181176843 181177106 -16018326 + L1M4 LINE L1 4500 4776 -1370 2 1967 554 227 25 45 chr1 181177115 181177272 -16018160 + RSINE1 SINE B4 12 165 0 2 1967 425 299 10 52 chr1 181177310 181177504 -16017928 + L1MDa LINE L1 259 444 -6189 2 1967 334 344 87 40 chr1 181177582 181178123 -16017309 + L1MDa LINE L1 666 1233 -5307 2 1967 198 103 0 0 chr1 181178246 181178275 -16017157 + (GGA)n Simple_repeat Simple_repeat 3 31 0 2 1967 569 262 48 56 chr1 181178416 181178667 -16016765 + L1MDa LINE L1 3421 3669 -2868 2 1967 306 233 0 32 chr1 181178716 181178809 -16016623 + G-rich Low_complexity Low_complexity 3 92 0 2 1967 543 365 15 11 chr1 181179992 181180198 -16015234 - B4 SINE B4 -2 290 85 2 1967 522 0 0 0 chr1 181180198 181180256 -16015176 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 2 1967 543 365 15 11 chr1 181180256 181180318 -16015114 - B4 SINE B4 -208 84 22 2 1967 1655 158 59 47 chr1 181180354 181180759 -16014673 - RMER17C LTR ERVK 0 410 1 2 1967 369 0 0 0 chr1 181181546 181181587 -16013845 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1967 207 146 0 0 chr1 181181745 181181786 -16013646 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1967 550 154 0 0 chr1 181181993 181182084 -16013348 - RSINE1 SINE B4 -72 93 3 2 1967 2750 47 96 3 chr1 181182452 181182818 -16012614 + MTB LTR MaLR 1 400 0 2 1967 468 318 17 28 chr1 181183332 181183513 -16011919 - L1MB5 LINE L1 -6 6168 5990 2 1967 506 16 16 0 chr1 181184059 181184122 -16011310 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1967 189 0 0 0 chr1 181185118 181185139 -16010293 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1967 241 45 43 43 chr1 181185890 181185937 -16009495 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1967 2502 156 69 12 chr1 181186087 181186579 -16008853 - RLTR24 LTR ERV1 0 529 10 2 1967 388 311 19 0 chr1 181187281 181187384 -16008048 + RSINE1 SINE B4 48 152 -13 2 1967 807 88 0 0 chr1 181187392 181187505 -16007927 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 1967 588 40 0 0 chr1 181189659 181189734 -16005698 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1967 414 0 0 0 chr1 181189868 181189914 -16005518 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2 1967 1902 154 33 139 chr1 181190529 181190959 -16004473 + ORR1C2 LTR MaLR 1 384 0 2 1967 516 100 0 0 chr1 181191463 181191543 -16003889 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 1967 276 30 0 0 chr1 181192350 181192383 -16003049 + (CAGGA)n Simple_repeat Simple_repeat 1 33 0 2 1967 636 238 0 20 chr1 181193540 181193677 -16001755 + B1_Mur3 SINE Alu 1 136 -13 2 1967 197 65 32 0 chr1 181193677 181193708 -16001724 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1967 297 0 0 0 chr1 181193716 181193749 -16001683 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1967 1331 83 15 68 chr1 181193796 181194002 -16001430 - B2_Mm2 SINE B2 0 195 1 2 1967 1393 85 32 0 chr1 181194395 181194583 -16000849 - B2_Mm2 SINE B2 0 195 2 2 1967 226 324 57 35 chr1 181195185 181195326 -16000106 + MIRb SINE MIR 43 186 -82 2 1967 1331 85 21 5 chr1 181195493 181195683 -15999749 + B2_Mm2 SINE B2 3 195 0 2 1967 261 0 0 0 chr1 181195918 181195947 -15999485 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1967 637 254 82 19 chr1 181195964 181196233 -15999199 - B4A SINE B4 -4 288 3 2 1967 475 260 128 20 chr1 181196245 181196496 -15998936 + Charlie1b DNA MER1_type 145 422 -101 2 1967 1009 65 65 0 chr1 181196545 181196683 -15998749 - B1_Mus2 SINE Alu 0 147 1 2 1967 3015 152 16 33 chr1 181196683 181197255 -15998177 - RLTR12A LTR ERVK -6 562 1 2 1967 1409 158 55 37 chr1 181197447 181197788 -15997644 + ORR1A4 LTR MaLR 11 367 0 2 1967 2891 95 2 22 chr1 181197830 181198281 -15997151 + LTRIS_Mus LTR ERV1 146 587 0 2 1967 4273 82 9 4 chr1 181198423 181198984 -15996448 + LTRIS2 LTR ERV1 1 564 0 2 1967 888 20 0 0 chr1 181200873 181200971 -15994461 + L1Md_T LINE L1 5489 5586 -297 2 1967 9126 6 0 1 chr1 181200971 181201968 -15993464 + L1Md_T LINE L1 5587 6582 0 2 1967 945 226 24 14 chr1 181202027 181202238 -15993194 + B3 SINE B2 2 214 -2 2 1967 570 194 62 2 chr1 181202243 181202404 -15993028 + B3 SINE B2 2 186 -9 2 1967 23 0 0 0 chr1 181202404 181202427 -15993005 + AT_rich Low_complexity Low_complexity 1 23 0 2 1967 832 280 10 0 chr1 181202767 181202974 -15992458 - ID_B1 SINE B4 0 224 16 2 1967 465 260 25 19 chr1 181203316 181203435 -15991997 + PB1D7 SINE Alu 2 127 0 2 1967 225 224 149 0 chr1 181203693 181203760 -15991672 - MIR SINE MIR -127 149 73 2 1967 721 283 42 35 chr1 181203827 181204116 -15991316 + B4A SINE B4 2 292 0 2 1967 369 0 0 0 chr1 181204146 181204187 -15991245 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1967 360 0 0 0 chr1 181204187 181204226 -15991206 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1967 369 109 0 0 chr1 181204396 181204451 -15990981 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2 1967 330 333 59 0 chr1 181205390 181205525 -15989907 + ID_B1 SINE B4 82 224 0 3 1967 226 252 7 22 chr1 181206933 181207071 -15988361 + ORR1B1-int LTR MaLR 619 754 -755 3 1967 874 68 0 0 chr1 181206974 181207092 -15988340 + B1_Mus1 SINE Alu 12 129 -19 3 1967 1371 161 64 10 chr1 181207178 181207631 -15987801 + RLTR11A2 LTR ERVK 20 527 0 3 1967 624 62 0 0 chr1 181210282 181210363 -15985069 + (GGGA)n Simple_repeat Simple_repeat 1 81 0 3 1967 357 82 0 0 chr1 181211285 181211334 -15984098 + (TGG)n Simple_repeat Simple_repeat 1 49 0 3 1967 438 184 12 19 chr1 181211355 181211451 -15983981 - B1F SINE Alu -7 110 19 3 1967 366 298 36 51 chr1 181211368 181211506 -15983926 - ID_B1 SINE B4 -45 179 44 3 1967 690 229 30 6 chr1 181213428 181213595 -15981837 - ORR1D2 LTR MaLR -17 353 183 3 1967 1619 136 116 6 chr1 181213588 181213907 -15981525 - ORR1B1 LTR MaLR -40 354 1 3 1967 232 222 62 16 chr1 181213957 181214021 -15981411 - ORR1D2 LTR MaLR -307 67 1 3 1967 938 227 97 31 chr1 181214495 181214844 -15980588 + MTD LTR MaLR 17 405 -14 3 1967 1398 259 11 16 chr1 181214964 181215337 -15980095 + MTEa LTR MaLR 1 371 -8 3 1967 786 134 0 0 chr1 181215407 181215534 -15979898 + (GGGA)n Simple_repeat Simple_repeat 1 127 0 3 1967 619 228 0 22 chr1 181215500 181215626 -15979806 + polypurine Low_complexity Low_complexity 1 124 0 3 1967 618 39 0 0 chr1 181215626 181215703 -15979729 + (GGAAA)n Simple_repeat Simple_repeat 2 78 0 3 1967 619 228 0 22 chr1 181215703 181215724 -15979708 + polypurine Low_complexity Low_complexity 125 144 0 3 1967 1083 11 0 91 chr1 181215724 181215922 -15979510 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 1967 619 228 0 22 chr1 181215922 181215957 -15979475 + polypurine Low_complexity Low_complexity 145 179 0 3 1967 850 97 192 59 chr1 181216105 181216292 -15979140 + B3 SINE B2 5 216 0 3 1967 249 315 0 0 chr1 181216494 181216567 -15978865 + ID2 SINE ID 1 73 -10 3 1967 297 0 0 0 chr1 181216587 181216620 -15978812 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1967 846 320 81 20 chr1 181217397 181218158 -15977274 - L1MB7 LINE L1 -7 6167 5364 3 1967 700 170 27 41 chr1 181219017 181219164 -15976268 + B1_Mur2 SINE Alu 5 149 0 3 1967 1158 181 159 123 chr1 181220221 181220292 -15975140 - Lx4B LINE L1 -17 7041 6950 3 1967 2865 117 39 39 chr1 181220292 181220774 -15974658 + RLTR45 LTR ERVK 1 482 0 3 1967 1397 205 65 13 chr1 181220774 181221156 -15974276 - Lx4B LINE L1 -109 6949 6503 3 1967 2629 164 20 2 chr1 181221155 181221606 -15973826 - L1_Mur2 LINE L1 -7 5870 5412 3 1967 232 271 137 16 chr1 181225547 181225671 -15969761 - L1MC5 LINE L1 -852 7109 6971 3 1967 546 280 59 41 chr1 181226766 181226986 -15968446 + ID_B1 SINE B4 1 224 0 3 1967 195 129 0 0 chr1 181227001 181227032 -15968400 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1967 250 176 20 0 chr1 181227609 181227660 -15967772 + MTEa LTR MaLR 290 341 -38 3 1967 2317 108 3 6 chr1 181229352 181229679 -15965753 + ORR1A2 LTR MaLR 1 326 -1 3 1967 246 221 129 29 chr1 181229991 181230061 -15965371 - ID2 SINE ID -5 78 2 3 1967 327 217 0 149 chr1 181230070 181230211 -15965221 - PB1 SINE Alu -3 124 5 3 1967 327 280 0 0 chr1 181230456 181230531 -15964901 + ID4_ SINE ID 9 83 0 3 1967 400 245 123 0 chr1 181230748 181230854 -15964578 + ID_B1 SINE B4 85 203 -21 3 1967 354 285 35 28 chr1 181231602 181231742 -15963690 + MLT1A LTR MaLR 3 150 -240 3 1967 234 284 72 27 chr1 181232360 181232464 -15962968 + PB1D10 SINE Alu 12 119 -1 3 1967 215 323 0 0 chr1 181232464 181232526 -15962906 + GA-rich Low_complexity Low_complexity 2 63 0 3 1967 385 282 176 19 chr1 181232634 181232858 -15962574 + B4 SINE B4 36 292 0 3 1967 222 118 0 0 chr1 181232861 181232895 -15962537 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1967 578 273 39 113 chr1 181233014 181233245 -15962187 + B3 SINE B2 3 216 0 3 1967 298 203 116 36 chr1 181233257 181233395 -15962037 - LTR37A LTR ERV1 -4 422 274 3 1967 234 91 0 0 chr1 181233541 181233574 -15961858 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 1967 356 282 26 60 chr1 181233574 181233691 -15961741 - B3A SINE B2 -21 177 65 3 1967 807 176 0 12 chr1 181235934 181236106 -15959326 - URR1A DNA MER1_type 0 226 57 3 1967 681 13 0 0 chr1 181236155 181236233 -15959199 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1967 279 0 0 0 chr1 181236233 181236263 -15959169 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1967 264 355 43 0 chr1 181236574 181236667 -15958765 - RSINE1 SINE B4 -1 164 68 3 1967 1528 218 79 26 chr1 181236916 181237336 -15958096 - RMER10A LTR ERVL 0 442 1 3 1967 825 107 0 0 chr1 181237621 181237743 -15957689 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 3 1967 1010 268 161 25 chr1 181238179 181238615 -15956817 - Lx9 LINE L1 -1 7643 7149 3 1967 431 284 44 44 chr1 181239006 181239212 -15956220 - MER3 DNA MER1_type 0 209 4 3 1967 471 18 0 0 chr1 181239912 181239968 -15955464 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1967 497 236 158 18 chr1 181240633 181240797 -15954635 - B3 SINE B2 0 216 30 3 1967 712 234 31 25 chr1 181240847 181241009 -15954423 + RSINE1 SINE B4 3 165 0 3 1967 206 81 27 0 chr1 181241054 181241091 -15954341 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 3 1967 234 150 0 0 chr1 181241099 181241139 -15954293 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1967 335 141 0 75 chr1 181241453 181241532 -15953900 + B1_Mur1 SINE Alu 46 118 -2 3 1967 195 42 0 0 chr1 181241901 181241925 -15953507 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1967 820 227 80 10 chr1 181242405 181242605 -15952827 + B3 SINE B2 1 214 -2 3 1967 956 286 161 54 chr1 181242690 181243652 -15951780 + L1MC3 LINE L1 6719 7783 -2 3 1967 617 172 17 8 chr1 181244237 181244354 -15951078 - PB1D9 SINE Alu 0 120 3 3 1967 289 232 29 0 chr1 181244828 181244897 -15950535 + ID4 SINE ID 3 73 -10 3 1967 180 0 0 0 chr1 181245232 181245252 -15950180 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1967 771 179 0 0 chr1 181245581 181245760 -15949672 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1967 419 246 284 12 chr1 181245854 181246023 -15949409 - B3 SINE B2 0 216 2 3 1967 351 290 0 10 chr1 181246695 181246796 -15948636 - MLT1B LTR MaLR -285 105 6 3 1967 669 218 79 22 chr1 181247797 181247975 -15947457 + B2_Mm2 SINE B2 3 190 -5 3 1967 740 210 30 12 chr1 181248298 181248467 -15946965 + B3 SINE B2 9 180 -36 3 1967 24 0 0 0 chr1 181249060 181249084 -15946348 + AT_rich Low_complexity Low_complexity 1 24 0 3 1967 488 186 0 9 chr1 181249115 181249229 -15946203 + GA-rich Low_complexity Low_complexity 3 115 0 3 1967 412 320 38 49 chr1 181250383 181250567 -15944865 - B3A SINE B2 -15 183 2 3 1967 649 193 7 7 chr1 181250863 181251014 -15944418 + GA-rich Low_complexity Low_complexity 3 153 0 3 1967 260 283 122 14 chr1 181252311 181252458 -15942974 - MER2 DNA MER2_type -44 301 139 3 1967 291 221 23 11 chr1 181252796 181252883 -15942549 + MER58D DNA MER1_type 237 324 -62 3 1967 1295 73 84 0 chr1 181252899 181253077 -15942355 + B2_Mm2 SINE B2 3 195 0 3 1967 846 206 24 18 chr1 181253288 181253458 -15941974 + B3 SINE B2 2 172 -26 3 1967 237 98 0 0 chr1 181253458 181253499 -15941933 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 3 1967 758 221 26 26 chr1 181253499 181253519 -15941913 + B3A SINE B2 173 191 -7 3 1967 26 50 0 0 chr1 181253529 181253569 -15941863 + AT_rich Low_complexity Low_complexity 1 40 0 3 1967 395 252 26 25 chr1 181253807 181253947 -15941485 - B1F SINE Alu -8 141 1 3 1967 22 0 0 0 chr1 181255302 181255324 -15940108 + AT_rich Low_complexity Low_complexity 1 22 0 3 1967 215 31 31 0 chr1 181255408 181255440 -15939992 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1967 438 321 101 11 chr1 181257768 181257957 -15937475 - MTE2a LTR MaLR -76 303 98 3 1967 935 109 7 0 chr1 181258120 181258267 -15937165 + (GGGA)n Simple_repeat Simple_repeat 1 148 0 3 1967 558 301 15 0 chr1 181258394 181258600 -15936832 + L1MA5 LINE L1 6087 6295 -5 3 1967 960 265 14 22 chr1 181258610 181258888 -15936544 + B4A SINE B4 1 276 -16 3 1967 215 353 15 0 chr1 181258981 181259049 -15936383 + ID4 SINE ID 4 72 -11 3 1967 931 215 83 2 chr1 181259284 181259554 -15935878 - ORR1D1 LTR MaLR -72 298 5 3 1967 21 36 0 0 chr1 181260635 181260663 -15934769 + AT_rich Low_complexity Low_complexity 1 28 0 3 1967 3782 62 4 14 chr1 181261880 181262370 -15933062 + L1Md_F2 LINE L1 6098 6582 0 3 1967 282 313 111 0 chr1 181262936 181263035 -15932397 + PB1D7 SINE Alu 3 112 -8 3 1967 277 117 31 77 chr1 181263713 181263778 -15931654 + 4.5SRNA scRNA scRNA 25 86 -8 3 1967 757 10 0 0 chr1 181263729 181263825 -15931607 + B1_Mm SINE Alu 41 136 -11 3 1967 208 0 30 30 chr1 181263825 181263858 -15931574 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1967 2820 181 60 2 chr1 181264299 181264869 -15930563 - Lx9 LINE L1 -15 7629 7027 3 1967 1085 227 115 29 chr1 181266265 181266605 -15928827 + ORR1D1 LTR MaLR 1 369 -5 3 1967 468 0 0 0 chr1 181266959 181267011 -15928421 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1967 2171 148 74 25 chr1 181267613 181268045 -15927387 + RLTR20B2 LTR ERVK 1 471 -106 3 1967 315 0 0 0 chr1 181268045 181268080 -15927352 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1967 1332 218 90 36 chr1 181268080 181268162 -15927270 + RLTR20B2 LTR ERVK 472 576 -1 3 1967 222 205 0 0 chr1 181269069 181269108 -15926324 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1967 267 208 49 49 chr1 181270744 181270825 -15924607 - MER3 DNA MER1_type -117 92 12 4 1967 203 136 22 43 chr1 181271113 181271159 -15924273 + (CAA)n Simple_repeat Simple_repeat 1 45 0 4 1967 224 100 0 24 chr1 181271667 181271708 -15923724 + (TAAAA)n Simple_repeat Simple_repeat 4 43 0 4 1967 235 315 17 69 chr1 181271954 181272070 -15923362 - Tigger9a DNA Tigger -602 130 21 4 1968 180 176 0 0 chr1 181273226 181273260 -15922172 + GA-rich Low_complexity Low_complexity 3 36 0 4 1968 324 268 0 0 chr1 181276456 181276609 -15918823 + (CA)n Simple_repeat Simple_repeat 2 154 0 4 1968 31 0 0 0 chr1 181277680 181277711 -15917721 + AT_rich Low_complexity Low_complexity 1 31 0 4 1968 28 0 0 0 chr1 181278250 181278278 -15917154 + AT_rich Low_complexity Low_complexity 1 28 0 4 1968 222 206 0 0 chr1 181278529 181278602 -15916830 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1968 593 190 14 42 chr1 181280137 181280280 -15915152 - B3 SINE B2 -68 148 10 4 1968 562 188 0 51 chr1 181281444 181281562 -15913870 + PB1D9 SINE Alu 1 112 -8 4 1968 441 0 0 0 chr1 181281600 181281649 -15913783 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1968 381 22 0 0 chr1 181282070 181282116 -15913316 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1968 236 296 14 0 chr1 181283731 181283802 -15911630 - B4A SINE B4 -4 288 217 4 1968 25 0 0 0 chr1 181284545 181284570 -15910862 + AT_rich Low_complexity Low_complexity 1 25 0 4 1968 903 180 116 17 chr1 181285394 181285575 -15909857 + B3 SINE B2 1 199 -17 4 1968 219 281 128 86 chr1 181285679 181285866 -15909566 + B3A SINE B2 2 196 -2 4 1968 279 0 0 0 chr1 181286037 181286068 -15909364 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1968 25 31 0 0 chr1 181287734 181287766 -15907666 + AT_rich Low_complexity Low_complexity 1 32 0 4 1968 291 257 105 61 chr1 181289798 181290026 -15905406 - L1MB3 LINE L1 -10 6173 5936 4 1968 1048 273 103 17 chr1 181290050 181290581 -15904851 - L1M3 LINE L1 -1903 4243 3637 4 1968 1789 154 106 6 chr1 181290636 181290994 -15904438 - ORR1B1 LTR MaLR 0 394 1 4 1968 1502 161 52 70 chr1 181291081 181291409 -15904023 - RLTRETN_Mm LTR ERVK 0 322 1 4 1968 1202 61 0 0 chr1 181291441 181291588 -15903844 - B1_Mus1 SINE Alu -1 147 1 4 1968 265 281 30 52 chr1 181291590 181291756 -15903676 - L1M3 LINE L1 -2678 3468 3301 4 1968 355 346 22 58 chr1 181293193 181293417 -15902015 + MIR SINE MIR 34 249 -13 4 1968 830 319 151 17 chr1 181293691 181294266 -15901166 + L1ME1 LINE L1 5424 6075 -104 4 1968 262 350 60 0 chr1 181294608 181294725 -15900707 + MLT1E1 LTR MaLR 32 155 -405 4 1968 241 312 12 0 chr1 181294867 181294947 -15900485 + ID4 SINE ID 1 81 -2 4 1968 200 333 0 0 chr1 181294949 181295012 -15900420 + GA-rich Low_complexity Low_complexity 2 64 0 4 1968 464 306 57 45 chr1 181295134 181295398 -15900034 + MLT1E1 LTR MaLR 386 652 -2 4 1968 572 292 88 13 chr1 181296043 181296282 -15899150 - MER2 DNA MER2_type -4 341 85 4 1968 183 344 16 0 chr1 181297794 181297855 -15897577 + L2b LINE L2 3290 3351 -24 4 1968 235 297 0 0 chr1 181298782 181298846 -15896586 + ID_B1 SINE B4 90 153 -71 4 1968 4644 42 13 2 chr1 181299035 181299589 -15895843 + LTRIS2 LTR ERV1 5 564 0 4 1968 432 0 0 0 chr1 181300619 181300667 -15894765 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1968 207 0 0 0 chr1 181300667 181300689 -15894743 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1968 957 199 127 0 chr1 181302758 181302979 -15892453 + MTD LTR MaLR 1 249 -170 4 1968 252 389 9 17 chr1 181303793 181303908 -15891524 - B4A SINE B4 0 292 179 4 1968 291 72 87 0 chr1 181303946 181304015 -15891417 + C-rich Low_complexity Low_complexity 2 76 0 4 1968 241 224 29 15 chr1 181304061 181304129 -15891303 - B4A SINE B4 -209 83 15 4 1968 694 296 37 123 chr1 181304384 181304789 -15890643 + MTE2a LTR MaLR 10 379 0 4 1968 229 226 32 0 chr1 181306246 181306308 -15889124 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 4 1968 21 57 0 0 chr1 181306423 181306458 -15888974 + AT_rich Low_complexity Low_complexity 1 35 0 4 1968 1427 28 78 6 chr1 181306751 181306911 -15888521 + B2_Mm1a SINE B2 2 160 -33 4 1968 390 21 0 0 chr1 181306911 181306958 -15888474 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1968 1427 28 78 6 chr1 181306958 181306976 -15888456 + B2_Mm1a SINE B2 161 191 -2 4 1968 252 77 0 0 chr1 181308175 181308214 -15887218 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1968 205 216 17 43 chr1 181308675 181308791 -15886641 + (TATATG)n Simple_repeat Simple_repeat 6 118 0 4 1968 312 172 0 0 chr1 181308968 181309026 -15886406 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1968 310 236 0 27 chr1 181309176 181309250 -15886182 - ID4_ SINE ID -1 82 11 4 1968 207 0 0 0 chr1 181309255 181309278 -15886154 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1968 310 238 170 9 chr1 181309281 181309387 -15886045 - ID_B1 SINE B4 -3 221 99 4 1968 286 306 107 90 chr1 181309387 181309403 -15886029 - PB1 SINE Alu -2 125 2 4 1968 180 0 0 0 chr1 181309710 181309730 -15885702 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1968 204 250 161 49 chr1 181309789 181309932 -15885500 + MIRb SINE MIR 51 209 -59 4 1968 768 257 4 87 chr1 181310389 181310619 -15884813 + B3 SINE B2 1 211 -5 4 1968 1065 132 0 3 chr1 181311488 181311830 -15883602 + (TATG)n Simple_repeat Simple_repeat 1 341 0 4 1968 400 248 45 58 chr1 181312585 181312739 -15882693 + B3A SINE B2 47 198 0 4 1968 351 0 0 0 chr1 181313025 181313064 -15882368 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1968 601 217 70 0 chr1 181314894 181315023 -15880409 - B1_Mur1 SINE Alu -11 138 1 4 1968 227 264 32 32 chr1 181317160 181317254 -15878178 + L1MA7 LINE L1 6198 6291 0 4 1968 246 62 0 0 chr1 181319983 181320015 -15875417 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1968 2276 26 2 258 chr1 181320861 181321377 -15874055 + RLTR10 LTR ERVK 1 384 -6 4 1968 11596 91 58 46 chr1 181321390 181323315 -15872117 + RLTR10-int LTR ERVK 40 1987 0 4 1968 2366 21 2 236 chr1 181323315 181323816 -15871616 + RLTR10 LTR ERVK 1 384 -6 4 1968 454 257 149 17 chr1 181326830 181327071 -15868361 + B4A SINE B4 2 274 -18 4 1968 203 260 0 20 chr1 181327083 181327134 -15868298 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1968 291 207 128 75 chr1 181327279 181327373 -15868059 + PB1D10 SINE Alu 19 117 0 4 1968 21 36 0 0 chr1 181327562 181327590 -15867842 + AT_rich Low_complexity Low_complexity 1 28 0 4 1968 748 166 7 54 chr1 181327591 181327738 -15867694 + B1_Mur2 SINE Alu 10 149 0 4 1968 2278 49 26 0 chr1 181327769 181328074 -15867358 - IAPLTR2b LTR ERVK -14 313 1 4 1968 400 350 32 16 chr1 181328416 181328605 -15866827 + MER58B DNA MER1_type 11 202 -139 4 1968 235 250 0 0 chr1 181328732 181328792 -15866640 + PB1D7 SINE Alu 2 61 -59 4 1968 213 39 0 0 chr1 181328807 181328833 -15866599 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1968 23 33 0 0 chr1 181329788 181329818 -15865614 + AT_rich Low_complexity Low_complexity 1 30 0 4 1968 23 0 0 0 chr1 181330939 181330962 -15864470 + AT_rich Low_complexity Low_complexity 1 23 0 4 1968 21 0 0 0 chr1 181331383 181331404 -15864028 + AT_rich Low_complexity Low_complexity 1 21 0 4 1968 1042 176 39 14 chr1 181332159 181332367 -15863065 + B3 SINE B2 1 213 -3 4 1968 915 155 0 20 chr1 181333876 181334027 -15861405 + B1_Mur3 SINE Alu 2 149 0 4 1968 436 223 70 26 chr1 181334054 181334169 -15861263 + PB1D9 SINE Alu 1 120 0 4 1968 30 0 0 0 chr1 181334891 181334921 -15860511 + AT_rich Low_complexity Low_complexity 1 30 0 4 1968 321 310 34 29 chr1 181336122 181336331 -15859101 + L1M2 LINE L1 4241 4450 -1693 4 1968 253 272 280 5 chr1 181336356 181336574 -15858858 + L1MA4 LINE L1 5961 6238 -62 4 1968 263 234 85 15 chr1 181336604 181336734 -15858698 + L1MA5 LINE L1 6153 6291 -9 4 1968 468 0 0 0 chr1 181337485 181337537 -15857895 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1968 590 147 28 167 chr1 181339141 181339179 -15856253 - URR1B DNA MER1_type 0 225 200 4 1968 5625 99 50 55 chr1 181339179 181340086 -15855346 + RLTR13D6 LTR ERVK 1 902 0 4 1968 1252 98 60 0 chr1 181340090 181340274 -15855158 + B2_Mm2 SINE B2 1 195 0 4 1968 590 147 28 167 chr1 181340274 181340410 -15855022 - URR1B DNA MER1_type -26 199 71 4 1968 602 169 32 84 chr1 181340700 181340855 -15854577 - B1_Mur2 SINE Alu -2 147 1 4 1968 225 0 0 0 chr1 181340924 181340949 -15854483 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1968 218 357 51 0 chr1 181340949 181341047 -15854385 - RSINE1 SINE B4 -41 124 22 4 1968 339 25 0 0 chr1 181341394 181341434 -15853998 + (GGA)n Simple_repeat Simple_repeat 2 41 0 4 1968 355 229 28 7 chr1 181342959 181343104 -15852328 + GA-rich Low_complexity Low_complexity 2 149 0 4 1968 288 258 106 11 chr1 181343117 181343211 -15852221 + ID_B1 SINE B4 102 204 -20 4 1968 999 96 0 42 chr1 181343239 181343381 -15852051 + B1_Mur4 SINE Alu 2 137 -13 4 1968 219 325 86 17 chr1 181343525 181343641 -15851791 - L4 LINE RTE -166 1863 1740 4 1968 682 240 5 35 chr1 181344168 181344355 -15851077 + Lx6 LINE L1 7181 7321 -139 4 1968 1181 29 0 0 chr1 181344818 181344957 -15850475 + B1_Mus2 SINE Alu 1 139 -8 4 1968 294 50 0 0 chr1 181344969 181345009 -15850423 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1968 312 287 97 46 chr1 181345983 181346110 -15849322 + MER20B DNA MER1_type 508 640 -143 4 1968 994 124 0 0 chr1 181346110 181346247 -15849185 + B1_Mus2 SINE Alu 1 137 -10 4 1968 210 37 0 0 chr1 181346247 181346274 -15849158 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1968 312 287 97 46 chr1 181346274 181346404 -15849028 + MER20B DNA MER1_type 641 778 -5 4 1968 296 250 182 81 chr1 181346547 181346695 -15848737 - RSINE1 SINE B4 -2 163 1 4 1968 1212 113 43 0 chr1 181347035 181347221 -15848211 + B2_Mm2 SINE B2 2 195 0 4 1968 270 116 0 0 chr1 181347221 181347264 -15848168 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 5 1968 353 258 98 0 chr1 181347544 181347676 -15847756 + B1F1 SINE Alu 5 149 0 5 1968 226 213 70 53 chr1 181347682 181347796 -15847636 + L1MCa LINE L1 2163 2278 -4230 5 1968 349 281 55 70 chr1 181347796 181347995 -15847437 + MT2B LTR ERVL 69 264 -337 5 1968 684 134 94 8 chr1 181347901 181348029 -15847403 + B1_Mur3 SINE Alu 10 148 -1 5 1968 2452 178 24 32 chr1 181348067 181348731 -15846701 - RLTR31_Mm LTR ERVK 0 561 1 5 1968 210 91 0 0 chr1 181350472 181350505 -15844927 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1968 207 100 0 0 chr1 181350773 181350803 -15844629 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1968 28 29 0 0 chr1 181350885 181350920 -15844512 + AT_rich Low_complexity Low_complexity 1 35 0 5 1968 571 256 102 60 chr1 181351026 181351292 -15844140 - B4A SINE B4 -14 278 2 5 1968 1195 54 0 7 chr1 181351641 181351790 -15843642 - B1_Mus1 SINE Alu 0 148 1 5 1968 264 137 0 0 chr1 181351887 181351938 -15843494 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 5 1968 180 0 0 0 chr1 181351949 181351969 -15843463 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1968 1059 100 6 0 chr1 181351969 181352129 -15843303 - B2_Mm2 SINE B2 -33 162 2 5 1968 21 71 0 0 chr1 181352700 181352742 -15842690 + AT_rich Low_complexity Low_complexity 1 42 0 5 1968 244 214 54 54 chr1 181352996 181353070 -15842362 + ORR1E LTR MaLR 1 74 -285 5 1968 504 105 0 0 chr1 181353208 181353284 -15842148 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1968 740 306 16 12 chr1 181353697 181353945 -15841487 + B4A SINE B4 30 278 -14 5 1968 342 0 0 0 chr1 181353975 181354013 -15841419 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1968 286 269 121 9 chr1 181354379 181354495 -15840937 + RMER15 LTR ERVL 447 575 0 5 1968 335 136 0 63 chr1 181354510 181354573 -15840859 - L1MB3 LINE L1 -34 6149 6091 5 1968 238 300 27 18 chr1 181355497 181355609 -15839823 - MIR SINE MIR -19 243 131 5 1968 667 197 35 7 chr1 181355647 181355790 -15839642 + B1F2 SINE Alu 3 149 0 5 1968 309 185 29 44 chr1 181356141 181356209 -15839223 + B1_Mus2 SINE Alu 1 67 -80 5 1968 2214 106 48 13 chr1 181356363 181356679 -15838753 + ORR1A2 LTR MaLR 1 327 0 5 1968 480 33 0 0 chr1 181357881 181357942 -15837490 - B2_Mm2 SINE B2 -134 61 1 5 1968 2879 77 10 8 chr1 181359764 181360159 -15835273 + MTA_Mm LTR MaLR 1 396 0 5 1968 492 93 0 0 chr1 181360630 181360705 -15834727 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1968 625 190 48 27 chr1 181361002 181361148 -15834284 + B1_Mur1 SINE Alu 1 149 0 5 1968 22 88 0 0 chr1 181361594 181361651 -15833781 + AT_rich Low_complexity Low_complexity 1 57 0 5 1968 244 321 37 9 chr1 181361724 181361831 -15833601 - Charlie1b DNA MER1_type -208 315 206 5 1968 959 298 55 22 chr1 181362484 181362851 -15832581 - MTEa LTR MaLR 0 379 1 5 1968 206 321 0 0 chr1 181364359 181364415 -15831017 + C-rich Low_complexity Low_complexity 6 61 0 5 1968 775 157 189 0 chr1 181364431 181364616 -15830816 - URR1A DNA MER1_type 0 226 7 5 1968 918 134 0 14 chr1 181364878 181365022 -15830410 + B1_Mus1 SINE Alu 1 142 -6 5 1968 238 352 0 0 chr1 181366500 181366588 -15828844 - MIR SINE MIR -45 217 130 5 1968 674 271 120 16 chr1 181366594 181366902 -15828530 + L1M4 LINE L1 5289 5628 -546 5 1968 339 235 0 2 chr1 181368550 181368633 -15826799 + B4A SINE B4 5 86 -206 5 1968 453 36 0 0 chr1 181368699 181368754 -15826678 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1968 1213 259 20 3 chr1 181368800 181369098 -15826334 + MTEa LTR MaLR 12 314 -65 5 1968 225 204 0 22 chr1 181369470 181369515 -15825917 + CT-rich Low_complexity Low_complexity 3 46 0 5 1968 228 35 0 0 chr1 181369520 181369549 -15825883 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 1968 1001 70 155 25 chr1 181369568 181369729 -15825703 + B2_Mm2 SINE B2 4 185 -10 5 1968 307 297 60 7 chr1 181371652 181371801 -15823631 + RSINE1 SINE B4 3 159 -6 5 1968 1430 112 9 39 chr1 181372300 181372533 -15822899 + URR1A DNA MER1_type 1 226 0 5 1968 525 235 88 7 chr1 181373011 181373148 -15822284 + B1_Mur1 SINE Alu 2 149 0 5 1968 21 0 0 0 chr1 181373403 181373424 -15822008 + AT_rich Low_complexity Low_complexity 1 21 0 5 1968 359 239 69 60 chr1 181374444 181374560 -15820872 + RSINE1 SINE B4 45 161 -4 5 1968 573 15 0 0 chr1 181374561 181374627 -15820805 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 1968 2810 130 39 2 chr1 181374670 181375133 -15820299 + RLTR19 LTR ERVK 20 499 0 5 1968 201 325 63 55 chr1 181376151 181376278 -15819154 - MIR SINE MIR -61 201 74 5 1968 239 281 37 0 chr1 181376965 181377047 -15818385 + Tigger5 DNA MER2_type 2158 2242 -164 5 1968 1119 143 405 11 chr1 181377134 181377396 -15818036 + ORR1B2 LTR MaLR 2 366 -1 5 1968 691 190 0 0 chr1 181377447 181377568 -15817864 + RSINE1 SINE B4 4 124 -41 5 1968 228 67 0 0 chr1 181377596 181377626 -15817806 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1968 21 36 0 0 chr1 181377626 181377654 -15817778 + AT_rich Low_complexity Low_complexity 1 28 0 5 1968 209 167 0 18 chr1 181377985 181378040 -15817392 + CT-rich Low_complexity Low_complexity 2 55 0 5 1968 392 256 48 34 chr1 181378325 181378565 -15816867 + L1MB4 LINE L1 5822 6057 -117 5 1968 287 300 36 9 chr1 181378584 181378608 -15816824 - ID_B1 SINE B4 -20 204 91 5 1968 300 291 0 11 chr1 181378608 181378693 -15816739 - PB1D10 SINE Alu -22 95 12 5 1968 416 221 8 42 chr1 181378693 181378811 -15816621 + PB1D10 SINE Alu 4 117 0 5 1968 547 139 0 0 chr1 181379001 181379087 -15816345 - B3 SINE B2 -129 87 2 5 1968 1895 142 99 26 chr1 181379705 181380089 -15815343 + MTC LTR MaLR 2 413 -8 5 1968 236 114 0 43 chr1 181380628 181380674 -15814758 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 5 1968 286 182 0 18 chr1 181380674 181380730 -15814702 + PB1D9 SINE Alu 42 96 -24 5 1968 414 261 67 7 chr1 181380749 181380884 -15814548 + B1F1 SINE Alu 1 143 -6 5 1968 293 283 65 0 chr1 181381071 181381163 -15814269 + PB1D10 SINE Alu 11 108 -9 5 1968 202 143 29 0 chr1 181381172 181381207 -15814225 + A-rich Low_complexity Low_complexity 3 38 0 5 1968 520 202 249 6 chr1 181381435 181381604 -15813828 + B3 SINE B2 1 210 -6 5 1968 22 35 0 0 chr1 181381674 181381703 -15813729 + AT_rich Low_complexity Low_complexity 1 29 0 5 1968 743 221 0 7 chr1 181381760 181381906 -15813526 + B1_Mur4 SINE Alu 1 145 -5 5 1968 350 269 0 31 chr1 181381906 181382002 -15813430 + GA-rich Low_complexity Low_complexity 2 94 0 5 1968 21 0 0 0 chr1 181384360 181384381 -15811051 + AT_rich Low_complexity Low_complexity 1 21 0 5 1968 373 248 26 9 chr1 181384429 181384543 -15810889 + PB1D10 SINE Alu 1 116 -1 5 1968 24 0 0 0 chr1 181384775 181384799 -15810633 + AT_rich Low_complexity Low_complexity 1 24 0 5 1968 441 241 200 36 chr1 181385589 181385864 -15809568 - L1MC4a LINE L1 -8 7987 7668 5 1968 370 346 66 26 chr1 181385866 181386159 -15809273 - B4A SINE B4 -10 282 1 5 1968 509 228 230 8 chr1 181386276 181386524 -15808908 - L1MC4a LINE L1 -534 7348 7046 5 1968 340 281 93 8 chr1 181389320 181389449 -15805983 + RSINE1 SINE B4 24 163 -2 5 1968 446 266 27 20 chr1 181389558 181389704 -15805728 + L1MB8 LINE L1 4931 5077 -1069 5 1968 352 208 104 0 chr1 181389759 181389865 -15805567 - PB1D9 SINE Alu -1 119 3 5 1968 269 238 101 56 chr1 181389987 181390076 -15805356 + PB1 SINE Alu 1 93 -34 5 1968 450 234 0 18 chr1 181390170 181390279 -15805153 + RSINE1 SINE B4 9 115 -50 5 1968 324 0 0 0 chr1 181390303 181390339 -15805093 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1968 791 290 127 18 chr1 181390361 181390810 -15804622 + L1MB8 LINE L1 5386 5883 -295 5 1968 432 200 121 9 chr1 181390818 181390934 -15804498 + B1F SINE Alu 5 133 -16 5 1968 232 291 11 34 chr1 181390934 181390953 -15804479 + polypurine Low_complexity Low_complexity 2 20 0 5 1968 393 22 0 0 chr1 181390953 181390999 -15804433 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 5 1968 232 291 11 34 chr1 181390999 181391068 -15804364 + polypurine Low_complexity Low_complexity 21 88 0 5 1968 1159 113 99 33 chr1 181391155 181391366 -15804066 - URR1B DNA MER1_type 0 225 1 5 1968 244 281 41 75 chr1 181391770 181391916 -15803516 + MER112 DNA MER1_type 10 150 -111 5 1968 579 257 101 78 chr1 181392120 181392339 -15803093 + B4A SINE B4 14 237 -55 5 1968 180 0 0 0 chr1 181392339 181392359 -15803073 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 5 1968 1526 158 8 4 chr1 181392585 181392851 -15802581 + ORR1A2 LTR MaLR 4 270 -57 5 1968 807 70 0 34 chr1 181392844 181392962 -15802470 - B1_Mm SINE Alu -1 146 33 5 1968 334 83 0 0 chr1 181392963 181393011 -15802421 + ORR1A2 LTR MaLR 272 319 -8 5 1968 3185 174 32 21 chr1 181393015 181393918 -15801514 + ORR1A2-int LTR MaLR 1 900 -609 5 1968 2425 146 0 10 chr1 181393918 181394325 -15801107 - RLTR17 LTR ERVK 0 692 290 5 1968 1242 102 17 0 chr1 181394325 181394501 -15800931 + B2_Mm1t SINE B2 1 179 -14 5 1968 279 111 348 85 chr1 181394552 181394670 -15800762 + B2_Mm2 SINE B2 47 195 0 5 1968 1495 122 34 19 chr1 181394675 181394942 -15800490 - RLTR17 LTR ERVK -421 271 1 5 1968 5332 109 95 15 chr1 181394942 181395935 -15799497 + ORR1A2-int LTR MaLR 27 1963 0 5 1968 1010 77 213 0 chr1 181395935 181396090 -15799342 - B2_Mm2 SINE B2 -5 190 3 5 1968 1805 110 29 49 chr1 181396090 181396297 -15799135 + ORR1A2 LTR MaLR 125 327 0 5 1968 530 338 38 25 chr1 181396297 181396534 -15798898 + B4A SINE B4 37 276 -16 5 1968 252 197 33 0 chr1 181396548 181396609 -15798823 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1968 227 312 16 0 chr1 181397055 181397119 -15798313 + ID4 SINE ID 6 70 -13 5 1968 513 246 9 0 chr1 181397191 181397301 -15798131 - PB1D10 SINE Alu -2 115 5 6 1968 306 0 0 0 chr1 181397319 181397353 -15798079 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1968 1058 104 0 7 chr1 181397353 181397498 -15797934 - B1_Mus1 SINE Alu -4 144 1 6 1968 22 0 0 0 chr1 181397577 181397599 -15797833 + AT_rich Low_complexity Low_complexity 1 22 0 6 1968 265 343 103 17 chr1 181398003 181398178 -15797254 + MER3 DNA MER1_type 3 192 -17 6 1968 240 86 0 0 chr1 181398622 181398657 -15796775 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1968 1211 61 0 0 chr1 181398702 181398849 -15796583 + B1_Mus2 SINE Alu 1 147 0 6 1968 222 116 0 0 chr1 181398850 181398893 -15796539 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1968 327 294 70 0 chr1 181399258 181399401 -15796031 + L1MB8 LINE L1 5496 5648 -535 6 1968 1607 21 21 0 chr1 181399455 181399643 -15795789 - B2_Mm1t SINE B2 0 193 2 6 1968 993 299 127 37 chr1 181399696 181399956 -15795476 - Tigger7 DNA MER2_type -102 603 309 6 1968 1124 113 15 56 chr1 181399956 181400153 -15795279 + B2_Mm2 SINE B2 3 191 -4 6 1968 993 306 46 30 chr1 181400153 181400437 -15794995 - Tigger7 DNA MER2_type -2183 308 10 6 1968 280 268 0 0 chr1 181400442 181400513 -15794919 + L1MB8 LINE L1 5644 5714 -457 6 1968 324 0 0 0 chr1 181400533 181400569 -15794863 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1968 270 252 93 0 chr1 181400598 181400705 -15794727 + L1MB8 LINE L1 5708 5824 -356 6 1968 951 160 189 22 chr1 181400705 181400890 -15794542 + B3 SINE B2 1 216 0 6 1968 1112 63 57 0 chr1 181400891 181401050 -15794382 + B2_Mm2 SINE B2 2 169 -26 6 1968 299 25 0 24 chr1 181401054 181401095 -15794337 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 6 1968 865 135 8 0 chr1 181401108 181401241 -15794191 + B1_Mus1 SINE Alu 15 148 0 6 1968 236 210 15 46 chr1 181401241 181401306 -15794126 + GA-rich Low_complexity Low_complexity 4 66 0 6 1968 343 202 112 0 chr1 181401306 181401450 -15793982 + L1MB8 LINE L1 5818 5983 -197 6 1968 2480 68 12 33 chr1 181401529 181401863 -15793569 - ORR1A2 LTR MaLR 0 327 1 6 1968 848 276 28 8 chr1 181401876 181402124 -15793308 + Lx8 LINE L1 6967 7219 -254 6 1968 231 278 60 30 chr1 181402219 181402319 -15793113 - MLT1A1 LTR MaLR -38 370 268 6 1968 886 182 93 23 chr1 181402570 181402784 -15792648 - MTD LTR MaLR -8 411 183 6 1968 1980 216 224 3 chr1 181402781 181403380 -15792052 + RMER19A LTR ERVK 7 737 0 6 1968 521 202 9 0 chr1 181403382 181403491 -15791941 - MTD LTR MaLR -309 110 1 6 30 1363 81 43 0 chr1 181403570 181403756 -15791676 + B2_Mm2 SINE B2 2 195 0 6 1969 189 0 0 0 chr1 181403865 181403886 -15791546 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1969 242 310 89 32 chr1 181404459 181404649 -15790783 - L1MC4 LINE L1 -60 7982 7782 6 1969 395 261 92 8 chr1 181405038 181405169 -15790263 - MER5A DNA MER1_type -44 145 4 6 1969 269 345 87 53 chr1 181405351 181405559 -15789873 + MER89 LTR ERV1 89 303 -256 6 1969 344 265 14 8 chr1 181405592 181405699 -15789733 - PB1D10 SINE Alu -18 131 28 6 1969 421 263 170 21 chr1 181405693 181405887 -15789545 + MER89 LTR ERV1 328 550 -9 6 1969 256 243 42 28 chr1 181406505 181406577 -15788855 + L1ME2z LINE L1 6053 6125 -319 6 1969 748 189 126 26 chr1 181406765 181406955 -15788477 + B3 SINE B2 1 209 -7 6 1969 809 138 0 0 chr1 181407034 181407157 -15788275 + B1_Mus1 SINE Alu 9 131 -17 6 1969 670 269 196 17 chr1 181407654 181408119 -15787313 + L1MC1 LINE L1 5785 6332 -1 6 1969 309 151 0 0 chr1 181408125 181408178 -15787254 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1969 217 268 141 0 chr1 181408250 181408321 -15787111 + PB1D10 SINE Alu 2 82 -35 6 1969 1098 198 56 128 chr1 181408435 181408926 -15786506 + MT2B2 LTR ERVL 8 574 -10 6 1969 342 262 41 10 chr1 181408936 181409057 -15786375 - MIR SINE MIR -82 180 58 6 1969 913 234 0 5 chr1 181409400 181409589 -15785843 + B3 SINE B2 2 189 -27 6 1969 495 274 12 25 chr1 181409602 181409763 -15785669 + MTE2a LTR MaLR 34 192 -187 6 1969 1129 165 28 73 chr1 181409926 181410213 -15785219 - RLTR28 LTR ERVL -250 274 1 6 1969 249 33 0 0 chr1 181411552 181411582 -15783850 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1969 50 0 0 0 chr1 181412109 181412159 -15783273 + AT_rich Low_complexity Low_complexity 1 50 0 6 1969 1177 62 7 0 chr1 181412184 181412329 -15783103 + B1_Mus1 SINE Alu 3 148 0 6 1969 656 79 31 31 chr1 181412453 181412583 -15782849 + (CAGAGA)n Simple_repeat Simple_repeat 2 131 0 6 1969 901 79 1 2 chr1 181412778 181412914 -15782518 - B2_Mm2 SINE B2 -58 135 1 6 1969 729 214 143 0 chr1 181412940 181413136 -15782296 - ID_B1 SINE B4 0 224 1 6 1969 437 152 0 12 chr1 181413789 181413869 -15781563 + MTD LTR MaLR 1 79 -340 6 1969 1130 40 14 0 chr1 181413872 181414020 -15781412 + B2_Mm2 SINE B2 1 150 -45 6 1969 231 114 0 0 chr1 181414032 181414067 -15781365 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 6 1969 960 232 103 29 chr1 181414074 181414385 -15781047 + MTD LTR MaLR 86 419 0 6 1969 267 319 42 21 chr1 181414385 181414480 -15780952 + RSINE1 SINE B4 52 148 -17 6 1969 28 0 0 0 chr1 181414620 181414648 -15780784 + AT_rich Low_complexity Low_complexity 1 28 0 6 1969 26 0 0 0 chr1 181414865 181414891 -15780541 + AT_rich Low_complexity Low_complexity 1 26 0 6 1969 292 259 73 47 chr1 181414940 181415090 -15780342 - MamRep434 DNA TcMar -270 156 3 6 1969 231 36 0 0 chr1 181415336 181415364 -15780068 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 6 1969 881 73 43 22 chr1 181415364 181415503 -15779929 - B2_Mm2 SINE B2 -15 180 39 6 1969 303 156 134 45 chr1 181415705 181415772 -15779660 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 6 1969 233 365 68 4 chr1 181415831 181416109 -15779323 + L1M2a LINE L1 4 299 -6869 6 1969 571 291 103 17 chr1 181416214 181416638 -15778794 + L1MA4 LINE L1 5767 6230 -67 6 1969 291 200 15 15 chr1 181416809 181416875 -15778557 + ID4_ SINE ID 1 66 -17 6 1969 334 258 71 20 chr1 181416913 181417012 -15778420 + B1F1 SINE Alu 11 114 -35 6 1969 450 273 229 17 chr1 181417092 181417323 -15778109 + B4 SINE B4 1 280 -12 6 1969 423 0 0 0 chr1 181417378 181417425 -15778007 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1969 329 306 22 75 chr1 181417471 181417605 -15777827 + B1F2 SINE Alu 1 127 -22 6 1969 273 279 0 0 chr1 181417603 181417682 -15777750 + ID_B1 SINE B4 146 224 0 6 1969 389 266 39 55 chr1 181417706 181417950 -15777482 + L1MC4 LINE L1 7825 8040 -2 6 1969 965 129 7 0 chr1 181418515 181418655 -15776777 - B1_Mur4 SINE Alu -9 141 1 6 1969 1333 219 16 16 chr1 181418737 181419044 -15776388 - MTC LTR MaLR -1 420 114 6 1969 1226 61 0 0 chr1 181419055 181419202 -15776230 + B1_Mus1 SINE Alu 1 147 -1 6 1969 24 0 0 0 chr1 181419214 181419238 -15776194 + AT_rich Low_complexity Low_complexity 1 24 0 6 1969 602 162 0 0 chr1 181419238 181419343 -15776089 - MTC LTR MaLR -304 117 13 6 1969 289 293 63 31 chr1 181419740 181419867 -15775565 - ORR1E LTR MaLR -223 136 6 6 1969 198 0 0 0 chr1 181419927 181419949 -15775483 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6 1969 259 306 8 24 chr1 181420487 181420611 -15774821 + L1MB2 LINE L1 5614 5735 -449 6 1969 329 262 54 3 chr1 181420625 181420751 -15774681 + L1MB2 LINE L1 5896 6029 -142 6 1969 1219 41 0 7 chr1 181420795 181420944 -15774488 + B1_Mus1 SINE Alu 1 148 0 6 1969 781 123 130 8 chr1 181422162 181422293 -15773139 + B1_Mus2 SINE Alu 1 147 0 6 1969 271 203 0 92 chr1 181422783 181422859 -15772573 + PB1D10 SINE Alu 27 95 -22 6 1969 531 233 29 25 chr1 181422793 181422946 -15772486 + ID_B1 SINE B4 111 269 -23 6 1969 500 74 0 61 chr1 181422948 181423063 -15772369 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 1969 615 252 0 14 chr1 181423607 181423752 -15771680 + ID_B1 SINE B4 81 223 -1 6 1969 234 356 0 0 chr1 181423787 181423874 -15771558 + B4A SINE B4 1 87 -205 6 1969 358 276 8 25 chr1 181423875 181423994 -15771438 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1969 1164 22 15 0 chr1 181424580 181424716 -15770716 + B1_Mus2 SINE Alu 1 138 -9 6 1969 270 0 0 0 chr1 181424716 181424746 -15770686 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1969 267 231 15 0 chr1 181424937 181425002 -15770430 - URR1B DNA MER1_type -129 96 31 6 1969 661 202 50 0 chr1 181425311 181425430 -15770002 + RSINE1 SINE B4 3 127 -38 6 1969 432 158 12 0 chr1 181425543 181425625 -15769807 + B1_Mur1 SINE Alu 54 136 -13 6 1969 252 234 47 0 chr1 181425684 181425748 -15769684 + PB1D10 SINE Alu 45 111 -6 6 1969 240 191 88 0 chr1 181426156 181426224 -15769208 + ID4_ SINE ID 3 76 -7 6 1969 278 253 195 0 chr1 181426256 181426343 -15769089 + B1F SINE Alu 15 118 -31 6 1969 888 169 77 28 chr1 181426351 181426533 -15768899 - URR1B DNA MER1_type 0 225 35 6 1969 865 137 0 14 chr1 181426665 181426806 -15768626 + B1_Mur2 SINE Alu 9 147 -2 6 1969 1021 243 98 20 chr1 181426916 181427222 -15768210 + Lx9 LINE L1 7186 7515 -129 6 1969 243 229 0 0 chr1 181427224 181427285 -15768147 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 6 1969 240 127 121 48 chr1 181427286 181427369 -15768063 - Lx9 LINE L1 -1307 6337 6249 6 1969 395 213 122 39 chr1 181427370 181427551 -15767881 + Lx9 LINE L1 7440 7635 -9 6 1969 453 241 66 0 chr1 181427710 181427847 -15767585 + B3A SINE B2 52 197 -1 6 1969 1098 102 0 7 chr1 181427857 181428005 -15767427 + B1_Mus1 SINE Alu 2 148 0 6 1969 697 193 15 7 chr1 181428660 181428796 -15766636 - RSINE1 SINE B4 -27 138 2 6 1969 241 275 12 36 chr1 181429245 181429328 -15766104 + MER90a LTR ERV1 151 231 -344 6 1969 497 295 85 27 chr1 181429353 181429576 -15765856 + MER90a LTR ERV1 372 607 -7 6 1969 369 331 86 0 chr1 181429845 181429996 -15765436 + RSINE1 SINE B4 2 165 0 6 1969 430 250 67 15 chr1 181430057 181430191 -15765241 + RSINE1 SINE B4 4 144 -21 6 1969 180 152 0 0 chr1 181430207 181430240 -15765192 + GA-rich Low_complexity Low_complexity 1 33 0 7 1969 238 250 156 0 chr1 181430374 181430438 -15764994 - MER5B DNA MER1_type -47 131 58 7 1969 733 226 24 6 chr1 181430633 181430802 -15764630 + B3A SINE B2 2 173 -25 7 1969 2037 63 28 3 chr1 181430802 181431089 -15764343 + MT2B2 LTR ERVL 1 294 -290 7 1969 404 195 186 0 chr1 181431169 181431287 -15764145 + ID_B1 SINE B4 78 217 -7 7 1969 278 338 81 0 chr1 181431295 181431431 -15764001 + RSINE1 SINE B4 2 148 -17 7 1969 1279 209 142 67 chr1 181431433 181431533 -15763899 + ORR1D1 LTR MaLR 1 96 -278 7 1969 959 82 212 12 chr1 181431533 181431693 -15763739 + B2_Mm2 SINE B2 2 193 -2 7 1969 1279 209 142 67 chr1 181431693 181431936 -15763496 + ORR1D1 LTR MaLR 97 370 -4 7 1969 320 70 0 0 chr1 181431956 181431999 -15763433 + B1_Mus2 SINE Alu 1 43 -104 7 1969 1200 62 0 0 chr1 181432027 181432173 -15763259 - B1_Mus2 SINE Alu 0 147 2 7 1969 22 35 0 0 chr1 181432181 181432210 -15763222 + AT_rich Low_complexity Low_complexity 1 29 0 7 1969 302 266 0 105 chr1 181432280 181432385 -15763047 + RSINE1 SINE B4 2 95 -70 7 1969 245 268 18 0 chr1 181432660 181432716 -15762716 - ID SINE ID -144 80 24 7 1969 356 214 0 0 chr1 181432788 181432858 -15762574 - PB1D7 SINE Alu -50 70 1 7 1969 336 285 38 89 chr1 181433129 181433287 -15762145 - MER5A1 DNA MER1_type -15 151 2 7 1969 592 212 31 29 chr1 181433536 181433681 -15761751 - B3A SINE B2 -52 141 7 7 1969 267 103 0 0 chr1 181433764 181433803 -15761629 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1969 225 94 0 0 chr1 181434227 181434259 -15761173 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1969 865 142 101 17 chr1 181434398 181434577 -15760855 + B2_Mm2 SINE B2 1 194 -1 7 1969 318 265 157 0 chr1 181434585 181434668 -15760764 + B1_Mur2 SINE Alu 2 97 -52 7 1969 606 129 121 0 chr1 181434697 181434813 -15760619 + B1_Mur2 SINE Alu 14 143 -6 7 1969 1056 210 44 43 chr1 181435222 181435636 -15759796 - MTC-int LTR MaLR -394 864 364 7 1969 570 115 0 11 chr1 181435643 181435731 -15759701 - B1_Mus2 SINE Alu -12 135 49 7 1969 399 211 41 117 chr1 181435796 181435875 -15759557 + ID_B1 SINE B4 90 155 -69 7 1969 1184 92 69 0 chr1 181435875 181436033 -15759399 + B2_Mm1a SINE B2 2 160 -33 7 1969 387 56 0 0 chr1 181436033 181436087 -15759345 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 7 1969 1184 92 69 0 chr1 181436087 181436101 -15759331 + B2_Mm1a SINE B2 161 184 -9 7 1969 399 211 41 117 chr1 181436101 181436166 -15759266 + ID_B1 SINE B4 156 223 -1 7 1969 301 317 15 75 chr1 181436216 181436349 -15759083 + PB1D7 SINE Alu 1 125 -24 7 1969 328 195 39 13 chr1 181436418 181436496 -15758936 + ID4_ SINE ID 3 82 -1 7 1969 306 0 0 0 chr1 181437052 181437086 -15758346 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 1969 948 127 99 44 chr1 181437167 181437349 -15758083 - B2_Mm2 SINE B2 -1 194 3 7 1969 535 49 37 12 chr1 181437622 181437704 -15757728 + (CCCCCT)n Simple_repeat Simple_repeat 1 84 0 7 1969 610 213 73 0 chr1 181437875 181438011 -15757421 + B1_Mur2 SINE Alu 4 149 0 7 1969 616 240 19 72 chr1 181438057 181438264 -15757168 - B3A SINE B2 0 198 3 7 1969 593 246 14 0 chr1 181438283 181438425 -15757007 + ID_B1 SINE B4 81 224 0 7 1969 550 234 46 23 chr1 181438532 181438663 -15756769 + ID_B1 SINE B4 83 216 -8 7 1969 1188 49 0 20 chr1 181439626 181439773 -15755659 - B1_Mus2 SINE Alu 0 147 4 7 1969 1503 73 0 16 chr1 181439776 181439970 -15755462 - B2_Mm1t SINE B2 -2 191 1 7 1969 1039 122 99 16 chr1 181440035 181440227 -15755205 - RMER4B LTR ERVK -335 250 43 7 1969 315 0 0 0 chr1 181440227 181440262 -15755170 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1969 443 258 32 0 chr1 181440308 181440432 -15755000 - B3 SINE B2 -83 133 6 7 1969 995 229 53 123 chr1 181440744 181441143 -15754289 + ORR1D1 LTR MaLR 1 371 -3 7 1969 625 267 176 49 chr1 181441300 181441469 -15753963 + B4 SINE B4 16 223 -69 7 1969 252 77 0 0 chr1 181441469 181441508 -15753924 + (CTCA)n Simple_repeat Simple_repeat 1 39 0 7 1969 625 267 176 49 chr1 181441508 181441582 -15753850 + B4 SINE B4 224 289 -3 7 1969 360 259 0 0 chr1 181441606 181441714 -15753718 + (TA)n Simple_repeat Simple_repeat 2 109 0 7 1969 450 263 42 49 chr1 181441731 181441875 -15753557 + ID_B1 SINE B4 82 224 0 7 1969 23 0 0 0 chr1 181442247 181442270 -15753162 + AT_rich Low_complexity Low_complexity 1 23 0 7 1969 757 258 33 22 chr1 181442353 181442535 -15752897 - B3 SINE B2 -29 187 4 7 1969 420 219 23 78 chr1 181442610 181442739 -15752693 - MT2B LTR ERVL -303 298 177 7 1969 646 147 92 0 chr1 181442630 181442739 -15752693 - B1_Mur1 SINE Alu -18 131 13 7 1969 426 288 45 15 chr1 181442739 181442764 -15752668 - ID_B1 SINE B4 -18 206 69 7 1969 475 193 0 12 chr1 181443193 181443277 -15752155 + ID4_ SINE ID 1 83 0 7 1969 609 282 46 0 chr1 181443862 181444036 -15751396 - B3A SINE B2 -16 182 1 7 1969 516 87 0 47 chr1 181444326 181444411 -15751021 + B1_Mus2 SINE Alu 66 149 -1 7 1969 283 324 56 28 chr1 181444421 181444437 -15750995 + B1F1 SINE Alu 2 148 -1 7 1969 369 238 31 39 chr1 181444437 181444564 -15750868 + ID_B1 SINE B4 99 224 0 7 1969 189 94 0 0 chr1 181444714 181444746 -15750686 + (TTG)n Simple_repeat Simple_repeat 1 32 0 7 1969 1228 54 0 0 chr1 181444782 181444929 -15750503 - B1_Mus2 SINE Alu 0 147 1 7 1969 929 81 223 0 chr1 181444987 181445135 -15750297 + B2_Mm2 SINE B2 1 181 -14 7 1969 428 60 0 0 chr1 181445170 181445237 -15750195 + B2_Mm1a SINE B2 127 193 0 7 1969 667 178 96 0 chr1 181445242 181445377 -15750055 + B1_Mur2 SINE Alu 1 148 -1 7 1969 198 0 0 0 chr1 181446160 181446182 -15749250 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1969 369 0 0 0 chr1 181446332 181446373 -15749059 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1969 483 91 0 0 chr1 181446398 181446464 -15748968 + PB1D9 SINE Alu 1 66 -54 7 1969 417 129 0 0 chr1 181446504 181446566 -15748866 + B3 SINE B2 3 64 -152 7 1969 612 209 0 92 chr1 181448302 181448465 -15746967 - B1_Mur1 SINE Alu -1 148 1 7 1969 389 267 0 78 chr1 181448469 181448611 -15746821 + MT2B LTR ERVL 127 257 -344 7 1969 799 164 0 21 chr1 181448516 181448659 -15746773 + B1_Mus1 SINE Alu 9 148 0 7 1969 1228 98 27 5 chr1 181448731 181448915 -15746517 - B2_Mm2 SINE B2 -6 189 2 7 1969 218 263 0 0 chr1 181449022 181449079 -15746353 - B1_Mus2 SINE Alu -65 82 26 7 1969 540 157 39 0 chr1 181449218 181449320 -15746112 - B1_Mur2 SINE Alu -4 145 40 7 1969 435 222 18 9 chr1 181449448 181449557 -15745875 - B1_Mur1 SINE Alu 0 149 40 7 1969 195 69 0 0 chr1 181449646 181449675 -15745757 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1969 1171 69 0 0 chr1 181449675 181449820 -15745612 - B1_Mus1 SINE Alu 0 148 4 7 1969 1491 231 62 20 chr1 181449826 181450183 -15745249 - RMER19B LTR ERVK -12 890 519 7 1969 653 176 61 0 chr1 181450177 181450308 -15745124 - RMER19B LTR ERVK -762 140 2 7 1969 1379 92 22 0 chr1 181451196 181451381 -15744051 - B2_Mm2 SINE B2 -6 189 1 7 1969 417 212 22 86 chr1 181451585 181451603 -15743829 - B1_Mur3 SINE Alu -17 132 119 7 1969 549 42 0 0 chr1 181451603 181451675 -15743757 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1969 351 0 0 0 chr1 181451675 181451713 -15743719 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1969 438 204 76 20 chr1 181451713 181451832 -15743600 - B1_Mur4 SINE Alu -26 124 3 7 1969 318 250 0 52 chr1 181451747 181451844 -15743588 - B4 SINE B4 -121 171 80 7 1969 300 200 14 28 chr1 181452111 181452183 -15743249 - ID4 SINE ID -11 72 2 7 1969 287 240 118 44 chr1 181452235 181452370 -15743062 + L1M4 LINE L1 5689 5833 -341 7 1969 216 0 0 0 chr1 181452560 181452584 -15742848 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1969 1178 28 0 41 chr1 181452588 181452735 -15742697 - B1_Mm SINE Alu -6 141 1 7 1969 360 297 57 76 chr1 181452942 181453099 -15742333 + RSINE1 SINE B4 6 159 -6 7 1969 28 29 0 0 chr1 181453135 181453170 -15742262 + AT_rich Low_complexity Low_complexity 1 35 0 7 1969 1593 53 0 0 chr1 181453245 181453433 -15741999 - B2_Mm1t SINE B2 -5 188 1 7 1969 526 275 64 14 chr1 181453508 181453648 -15741784 + B4A SINE B4 2 148 -144 7 1969 2350 159 182 93 chr1 181454599 181455160 -15740272 - RMER19C LTR ERVK 0 611 1 7 1969 726 120 152 0 chr1 181455160 181455285 -15740147 + B1_Mus1 SINE Alu 5 148 0 7 1969 574 125 19 0 chr1 181455337 181455441 -15739991 + ORR1B1 LTR MaLR 1 106 -288 7 1969 594 181 141 45 chr1 181455471 181455627 -15739805 + ORR1B1 LTR MaLR 42 212 -182 7 1969 1927 113 101 0 chr1 181455655 181455991 -15739441 + ORR1C1 LTR MaLR 1 370 -8 7 1969 2815 49 26 0 chr1 181456033 181456383 -15739049 + L1Md_F3 LINE L1 6226 6584 0 7 1969 301 256 14 0 chr1 181456417 181456504 -15738928 - B1F2 SINE Alu -15 105 17 7 1969 449 188 122 26 chr1 181456769 181456884 -15738548 + B1_Mur1 SINE Alu 23 148 -1 7 1969 280 274 55 31 chr1 181456948 181457076 -15738356 + RLTR42-int LTR ERVK 1270 1400 -4122 7 1969 1227 54 0 7 chr1 181457344 181457493 -15737939 - B1_Mus1 SINE Alu 0 148 1 7 1969 250 269 49 166 chr1 181457667 181457890 -15737542 - B4A SINE B4 -67 225 29 7 1969 294 310 113 17 chr1 181458334 181458449 -15736983 - ID_B1 SINE B4 -14 210 85 7 1969 2013 142 0 31 chr1 181458657 181458978 -15736454 + RLTR10E LTR ERVK 1 311 0 7 1969 223 225 141 0 chr1 181459622 181459693 -15735739 - PB1D7 SINE Alu -24 96 16 8 1969 770 182 15 0 chr1 181459874 181460011 -15735421 - B1_Mur1 SINE Alu -2 147 9 8 1969 732 103 87 8 chr1 181460184 181460311 -15735121 - B1_Mus1 SINE Alu -1 147 11 8 1969 219 235 165 0 chr1 181460323 181460408 -15735024 - PB1D7 SINE Alu 0 120 22 8 1969 472 229 7 170 chr1 181460448 181460507 -15734925 + ID_B1 SINE B4 98 156 -68 8 1969 923 24 148 16 chr1 181460507 181460635 -15734797 + B1_Mus2 SINE Alu 1 145 -2 8 1969 472 229 7 170 chr1 181460635 181460722 -15734710 + ID_B1 SINE B4 157 220 -4 8 1969 866 232 38 0 chr1 181460853 181461038 -15734394 + B3A SINE B2 3 194 -4 8 1969 383 245 75 9 chr1 181461165 181461272 -15734160 - B3A SINE B2 0 198 85 8 1969 902 227 118 11 chr1 181462317 181462580 -15732852 - B4A SINE B4 0 292 2 8 1969 1489 68 5 5 chr1 181463060 181463253 -15732179 - B2_Mm2 SINE B2 -1 194 2 8 1969 258 226 137 21 chr1 181463253 181463348 -15732084 + PB1D10 SINE Alu 11 116 -1 8 1969 342 174 29 0 chr1 181463353 181463422 -15732010 + B1_Mur4 SINE Alu 2 72 -78 8 1969 261 237 51 0 chr1 181463507 181463566 -15731866 + B4 SINE B4 83 144 -148 8 1969 599 189 64 64 chr1 181463515 181463656 -15731776 + B1F2 SINE Alu 9 149 0 8 1969 514 183 0 19 chr1 181463971 181464077 -15731355 + PB1D9 SINE Alu 17 120 0 8 1969 335 164 0 3 chr1 181464176 181464249 -15731183 + B3A SINE B2 20 91 -125 8 1969 302 216 47 93 chr1 181464293 181464400 -15731032 + B3A SINE B2 97 198 0 8 1969 726 264 35 10 chr1 181464435 181464638 -15730794 + B3 SINE B2 3 210 -6 8 1969 538 288 0 7 chr1 181464670 181464817 -15730615 + B1F1 SINE Alu 3 148 -1 8 1969 248 239 28 132 chr1 181465038 181465144 -15730288 + RSINE1 SINE B4 71 165 0 8 1969 270 220 17 0 chr1 181465209 181465268 -15730164 - B1_Mus1 SINE Alu -87 61 2 8 1969 759 186 21 0 chr1 181466301 181466446 -15728986 + B1_Mus1 SINE Alu 1 148 0 8 1969 240 158 0 0 chr1 181466620 181466658 -15728774 + RSINE1 SINE B4 41 78 -87 8 1969 524 236 68 52 chr1 181466729 181466921 -15728511 + L1MB3 LINE L1 5473 5667 -516 8 1969 813 228 73 15 chr1 181466921 181467126 -15728306 + B4A SINE B4 2 218 -74 8 1969 628 295 31 23 chr1 181467247 181467504 -15727928 + L1MB3 LINE L1 5647 5905 -278 8 1969 246 273 248 0 chr1 181468307 181468428 -15727004 + B4A SINE B4 141 291 -1 8 1969 703 220 22 31 chr1 181469178 181469365 -15726067 + B3A SINE B2 1 181 -14 8 1969 604 261 43 3 chr1 181469955 181470145 -15725287 - B3A SINE B2 -3 213 14 8 1969 659 302 114 47 chr1 181470625 181471560 -15723872 + L1_Mur3 LINE L1 1318 2276 -3601 8 1969 808 254 24 14 chr1 181471729 181471937 -15723495 + B3 SINE B2 1 210 -6 8 1969 198 167 0 0 chr1 181472214 181472250 -15723182 + GA-rich Low_complexity Low_complexity 3 38 0 8 1969 248 104 42 0 chr1 181472359 181472407 -15723025 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 8 1969 320 318 37 37 chr1 181472692 181472826 -15722606 + PB1D10 SINE Alu 10 143 -6 8 1969 794 140 95 7 chr1 181473146 181473283 -15722149 + B1_Mur3 SINE Alu 1 149 0 8 1969 551 212 0 17 chr1 181473397 181473517 -15721915 - B1F2 SINE Alu -10 139 22 8 1969 330 312 8 31 chr1 181473622 181473751 -15721681 - B1F2 SINE Alu -20 129 4 8 1969 324 147 0 0 chr1 181475185 181475260 -15720172 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 8 1969 734 155 93 0 chr1 181475269 181475398 -15720034 - B1_Mur2 SINE Alu -7 142 2 8 1969 481 261 15 7 chr1 181475743 181475878 -15719554 + RSINE1 SINE B4 1 136 -29 8 1969 469 241 104 8 chr1 181477772 181477906 -15717526 + B1F SINE Alu 3 149 0 8 1969 27 0 0 0 chr1 181478012 181478039 -15717393 + AT_rich Low_complexity Low_complexity 1 27 0 8 1969 270 179 0 0 chr1 181478039 181478106 -15717326 - Lx5 LINE L1 -7 7043 6977 8 1969 275 234 62 0 chr1 181478198 181478262 -15717170 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 8 1969 261 264 0 27 chr1 181478386 181478460 -15716972 - ID4 SINE ID -11 72 1 8 1969 425 287 150 24 chr1 181478471 181478724 -15716708 - B4A SINE B4 0 292 8 8 1969 360 283 42 0 chr1 181479319 181479439 -15715993 - MER33 DNA MER1_type -198 126 2 8 1969 342 0 0 0 chr1 181479520 181479558 -15715874 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1969 234 256 0 113 chr1 181480857 181480954 -15714478 + PB1D10 SINE Alu 32 117 0 8 1969 386 330 0 0 chr1 181481002 181481117 -15714315 + PB1 SINE Alu 1 115 -12 8 1969 601 72 0 0 chr1 181481237 181481320 -15714112 + B2_Mm2 SINE B2 3 85 -110 8 1969 405 250 10 39 chr1 181481815 181481919 -15713513 + PB1D7 SINE Alu 15 115 -5 8 1969 203 0 37 0 chr1 181482657 181482684 -15712748 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1969 288 0 0 0 chr1 181482704 181482736 -15712696 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1969 216 0 0 0 chr1 181482736 181482759 -15712673 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1969 294 293 20 29 chr1 181482774 181482876 -15712556 - RSINE1 SINE B4 -18 147 47 8 1969 454 165 117 29 chr1 181483806 181483943 -15711489 - B1_Mur1 SINE Alu 0 149 1 8 1969 592 217 98 0 chr1 181485110 181485253 -15710179 + RSINE1 SINE B4 3 159 -6 8 1969 38 22 0 0 chr1 181485301 181485346 -15710086 + AT_rich Low_complexity Low_complexity 1 45 0 8 1969 966 149 0 7 chr1 181485420 181485569 -15709863 + B1_Mur4 SINE Alu 3 150 0 8 1969 386 175 12 0 chr1 181485572 181485652 -15709780 + GA-rich Low_complexity Low_complexity 4 84 0 8 1969 23 0 0 0 chr1 181485674 181485697 -15709735 + AT_rich Low_complexity Low_complexity 1 23 0 8 1969 294 29 0 0 chr1 181485736 181485771 -15709661 + (CAG)n Simple_repeat Simple_repeat 2 36 0 8 1969 533 167 0 22 chr1 181485782 181485874 -15709558 - B1F2 SINE Alu -29 120 31 8 1969 229 291 53 26 chr1 181485938 181486051 -15709381 - RSINE1 SINE B4 -37 128 13 8 1969 186 87 43 21 chr1 181486256 181486303 -15709129 + (TTG)n Simple_repeat Simple_repeat 2 49 0 8 1969 259 146 0 0 chr1 181486364 181486405 -15709027 + PB1D9 SINE Alu 1 41 -79 8 1969 654 248 42 36 chr1 181486398 181486565 -15708867 + B3A SINE B2 15 182 -16 8 1969 606 63 0 0 chr1 181486570 181486649 -15708783 + (CCA)n Simple_repeat Simple_repeat 1 79 0 8 1969 272 308 0 2 chr1 181487086 181487181 -15708251 - BC1_Mm scRNA scRNA -56 96 3 8 1969 441 188 100 67 chr1 181487386 181487506 -15707926 - B1F1 SINE Alu -25 124 1 8 1969 500 135 22 0 chr1 181487512 181487601 -15707831 - B1F SINE Alu -3 146 56 8 1969 268 229 63 63 chr1 181487645 181487771 -15707661 + L1MB5 LINE L1 5514 5639 -545 8 1969 264 296 56 8 chr1 181487806 181487932 -15707500 + ID_B1 SINE B4 83 214 -10 8 1969 253 340 70 7 chr1 181487941 181488083 -15707349 + L1MB5 LINE L1 5675 5825 -359 8 1969 291 28 0 0 chr1 181488236 181488272 -15707160 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 8 1969 631 189 83 0 chr1 181488274 181488406 -15707026 - B1_Mur2 SINE Alu 0 149 7 8 1969 332 188 72 0 chr1 181488406 181488475 -15706957 + L1MB5 LINE L1 5902 5975 -199 8 1969 407 210 20 20 chr1 181488492 181488594 -15706838 - B1F SINE Alu -1 148 47 8 1969 234 298 65 24 chr1 181489167 181489291 -15706141 - MIR3 SINE MIR -66 142 14 8 1969 229 321 0 12 chr1 181489929 181489949 -15705483 - BC1_Mm scRNA scRNA -58 94 75 8 1969 504 48 0 0 chr1 181489949 181490012 -15705420 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1969 244 249 0 17 chr1 181490012 181490073 -15705359 - ID4 SINE ID -78 74 14 8 1969 201 265 14 29 chr1 181490200 181490270 -15705162 + CT-rich Low_complexity Low_complexity 4 72 0 8 1969 419 207 8 128 chr1 181490289 181490422 -15705010 - PB1D10 SINE Alu 0 117 1 8 1969 402 236 136 102 chr1 181492363 181492627 -15702805 + B4 SINE B4 5 277 -15 8 1969 264 328 145 11 chr1 181492827 181493006 -15702426 + MIRb SINE MIR 55 257 -11 8 1969 910 246 0 15 chr1 181493548 181493754 -15701678 + B3 SINE B2 2 204 -12 8 1969 708 120 132 31 chr1 181494383 181494512 -15700920 - B1_Mur1 SINE Alu -7 142 1 8 1969 759 164 90 0 chr1 181494547 181494681 -15700751 - B1_Mus2 SINE Alu -1 146 1 8 1969 1133 88 0 0 chr1 181494795 181494942 -15700490 + B1_Mus2 SINE Alu 1 147 0 8 1969 252 86 0 0 chr1 181494942 181494977 -15700455 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1969 357 24 0 0 chr1 181495070 181495112 -15700320 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8 1969 1160 64 0 0 chr1 181495113 181495270 -15700162 - B2_Mm2 SINE B2 -37 158 2 8 1969 192 40 0 0 chr1 181495316 181495341 -15700091 + (TTG)n Simple_repeat Simple_repeat 2 26 0 8 1969 246 143 0 0 chr1 181495351 181495400 -15700032 + (T)n Simple_repeat Simple_repeat 1 49 0 8 1969 1146 35 21 0 chr1 181495401 181495543 -15699889 - B1_Mus2 SINE Alu -1 146 2 8 1969 1359 191 70 10 chr1 181495800 181495918 -15699514 - Lx9 LINE L1 -51 7422 7341 8 1969 405 0 0 0 chr1 181495918 181495963 -15699469 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1969 4114 198 55 9 chr1 181495963 181496830 -15698602 - Lx9 LINE L1 -173 7471 6427 8 1969 1284 229 52 46 chr1 181496952 181497319 -15698113 - MTE2a LTR MaLR -10 369 1 8 1969 26 0 0 0 chr1 181497370 181497396 -15698036 + AT_rich Low_complexity Low_complexity 1 26 0 8 1969 348 290 171 7 chr1 181497396 181497542 -15697890 + B3 SINE B2 46 215 -1 8 1969 345 174 0 0 chr1 181498188 181498257 -15697175 + CT-rich Low_complexity Low_complexity 2 70 0 8 1969 236 196 0 38 chr1 181498257 181498284 -15697148 + T-rich Low_complexity Low_complexity 26 51 0 8 1969 1231 48 0 0 chr1 181498284 181498429 -15697003 - B1_Mus2 SINE Alu -2 145 1 8 1969 236 196 0 38 chr1 181498429 181498454 -15696978 + T-rich Low_complexity Low_complexity 1 25 0 9 1969 385 241 16 79 chr1 181498478 181498604 -15696828 + RSINE1 SINE B4 15 132 -33 9 1969 21 71 0 0 chr1 181498627 181498669 -15696763 + AT_rich Low_complexity Low_complexity 1 42 0 9 1969 266 201 66 104 chr1 181499605 181499788 -15695644 - RMER10A LTR ERVL -145 297 122 9 1969 351 0 0 0 chr1 181499948 181499987 -15695445 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1969 365 258 85 39 chr1 181500002 181500131 -15695301 + L1MDa LINE L1 2384 2518 -4115 1 1969 288 239 40 40 chr1 181500823 181500897 -15694535 - Charlie5 DNA MER1_type -1 2623 2550 2 1969 524 254 30 8 chr1 181500931 181501062 -15694370 - B1F1 SINE Alu -15 134 1 3 1969 421 254 58 29 chr1 181501145 181501283 -15694149 - B1F2 SINE Alu -5 144 3 4 1969 327 229 94 0 chr1 181501283 181501379 -15694053 - Charlie5 DNA MER1_type -280 2344 2240 2 1969 390 42 0 0 chr1 181501678 181501726 -15693706 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1969 693 276 122 72 chr1 181501733 181501823 -15693609 + B4A SINE B4 1 89 -203 6 1969 1003 84 40 34 chr1 181501823 181501971 -15693461 + B1_Mur4 SINE Alu 1 149 -1 7 1969 693 276 122 72 chr1 181501971 181502142 -15693290 + B4A SINE B4 90 275 -17 6 1969 797 286 54 27 chr1 181502166 181502510 -15692922 - Lx8 LINE L1 -1559 5914 5529 8 1969 440 246 94 8 chr1 181502522 181502649 -15692783 - ID_B1 SINE B4 -10 214 77 9 1969 243 295 26 0 chr1 181502649 181502727 -15692705 - L1M2 LINE L1 -709 5603 5524 1 1969 416 230 107 38 chr1 181502955 181503086 -15692346 + B1F SINE Alu 4 143 -6 1 1969 390 147 0 0 chr1 181503171 181503239 -15692193 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1969 1217 48 0 0 chr1 181503642 181503788 -15691644 - B1_Mus2 SINE Alu 0 147 2 1 1969 1448 78 10 5 chr1 181505272 181505466 -15689966 - B2_Mm2 SINE B2 0 195 1 1 1969 368 40 20 0 chr1 181505708 181505758 -15689674 + (CATA)n Simple_repeat Simple_repeat 3 53 0 1 1969 434 271 19 9 chr1 181505764 181505872 -15689560 - B4 SINE B4 -112 180 72 1 1969 365 255 118 0 chr1 181505870 181505972 -15689460 - PB1D10 SINE Alu -2 115 2 1 1969 574 247 22 92 chr1 181505972 181506069 -15689363 - B4 SINE B4 -130 94 2 1 1969 278 300 24 24 chr1 181506341 181506423 -15689009 - MIR SINE MIR -6 256 175 1 1969 254 337 10 29 chr1 181506452 181506556 -15688876 + ID_B1 SINE B4 120 221 -3 2 1969 435 331 15 23 chr1 181506572 181506705 -15688727 + RSINE1 SINE B4 17 148 -17 2 1969 468 0 0 0 chr1 181506754 181506806 -15688626 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1969 237 185 19 0 chr1 181507159 181507213 -15688219 + B1_Mur4 SINE Alu 1 55 -95 2 1969 712 139 0 9 chr1 181507251 181507360 -15688072 + B1_Mur4 SINE Alu 43 150 0 2 1969 190 179 0 35 chr1 181507544 181507602 -15687830 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 2 1969 736 275 28 5 chr1 181507605 181507817 -15687615 - ID_B1 SINE B4 -6 218 2 2 1969 753 202 133 0 chr1 181507880 181508038 -15687394 - B3 SINE B2 0 216 38 2 1969 213 218 0 0 chr1 181508131 181508186 -15687246 + T-rich Low_complexity Low_complexity 1 55 0 2 1969 365 265 29 10 chr1 181508353 181508456 -15686976 - PB1 SINE Alu -2 125 21 2 1969 1367 73 17 0 chr1 181508505 181508683 -15686749 - B2_Mm2 SINE B2 -9 186 6 2 1969 906 166 200 0 chr1 181508702 181508877 -15686555 - B3 SINE B2 -4 212 3 3 1969 665 276 64 53 chr1 181510641 181510924 -15684508 + B4A SINE B4 2 287 -5 3 1969 351 219 168 0 chr1 181511244 181511363 -15684069 + B1F1 SINE Alu 3 141 -8 3 1969 455 321 73 28 chr1 181511380 181511707 -15683725 - L1MB7 LINE L1 -152 6032 5691 3 1969 471 264 59 21 chr1 181511882 181512068 -15683364 - L1MB7 LINE L1 -19 6165 5973 3 1969 204 351 57 43 chr1 181512395 181512535 -15682897 + MIRb SINE MIR 46 187 -81 3 1969 201 154 0 0 chr1 181512702 181512741 -15682691 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1969 25 31 0 0 chr1 181512754 181512786 -15682646 + AT_rich Low_complexity Low_complexity 1 32 0 3 1969 236 234 21 0 chr1 181512787 181512834 -15682598 - ID4_ SINE ID -2 81 34 3 1969 605 276 161 92 chr1 181513092 181513539 -15681893 - MLT1D LTR MaLR -24 481 4 3 1969 757 155 14 82 chr1 181514300 181514470 -15680962 + B1_Mur4 SINE Alu 1 149 -1 4 1969 230 260 39 13 chr1 181514586 181514664 -15680768 + L1MB7 LINE L1 6105 6184 0 4 1969 329 281 52 17 chr1 181515036 181515152 -15680280 - RSINE1 SINE B4 -35 130 11 4 1969 523 238 46 59 chr1 181516705 181516857 -15678575 + ID_B1 SINE B4 74 223 -1 4 1969 708 172 35 50 chr1 181516721 181516862 -15678570 + B1F SINE Alu 11 149 0 4 1969 319 289 72 48 chr1 181517474 181517641 -15677791 - L1MB4 LINE L1 -57 6123 5953 4 1969 399 280 85 22 chr1 181517651 181517874 -15677558 - L1MB4 LINE L1 -5401 1348 1112 4 1969 495 311 133 27 chr1 181517972 181518303 -15677129 - L1MB4 LINE L1 -5882 725 360 4 1969 398 208 27 45 chr1 181519439 181519550 -15675882 + L1MC1 LINE L1 5804 5912 -421 4 1969 183 130 0 53 chr1 181519740 181519797 -15675635 + T-rich Low_complexity Low_complexity 3 56 0 4 1969 739 181 16 0 chr1 181519797 181519924 -15675508 - B1_Mus2 SINE Alu -18 129 1 4 1969 257 294 93 29 chr1 181519940 181520080 -15675352 - B1F2 SINE Alu 0 149 1 5 1969 358 220 0 20 chr1 181520404 181520506 -15674926 + CT-rich Low_complexity Low_complexity 2 101 0 5 1969 441 317 11 113 chr1 181520598 181520692 -15674740 - B4A SINE B4 -10 282 208 5 1969 2843 120 5 2 chr1 181520692 181521111 -15674321 + MTC LTR MaLR 2 421 0 5 1969 441 317 11 113 chr1 181521111 181521201 -15674231 - B4A SINE B4 -85 207 117 5 1969 523 309 0 32 chr1 181521201 181521358 -15674074 - ID_B1 SINE B4 -3 221 70 5 1969 387 0 0 0 chr1 181521598 181521641 -15673791 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1969 956 258 17 99 chr1 181522325 181522618 -15672814 - B4 SINE B4 0 292 24 5 1969 628 237 26 196 chr1 181523452 181523646 -15671786 + B3 SINE B2 30 203 -13 5 1969 437 254 249 0 chr1 181524666 181524843 -15670589 - ID_B1 SINE B4 -2 222 2 5 1969 22 35 0 0 chr1 181524896 181524925 -15670507 + AT_rich Low_complexity Low_complexity 1 29 0 5 1969 249 33 0 0 chr1 181525314 181525344 -15670088 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1969 665 255 57 0 chr1 181525346 181525503 -15669929 - B3A SINE B2 -32 166 1 6 1969 210 162 0 0 chr1 181525857 181525894 -15669538 + T-rich Low_complexity Low_complexity 1 37 0 6 1969 1128 82 7 0 chr1 181525999 181526146 -15669286 + B1_Mus1 SINE Alu 1 148 0 6 1969 1182 94 74 47 chr1 181526581 181526771 -15668661 - B2_Mm2 SINE B2 0 195 1 6 1969 348 246 174 9 chr1 181526939 181527054 -15668378 - RSINE1 SINE B4 -29 136 3 6 1969 326 368 70 35 chr1 181527100 181527359 -15668073 + L2 LINE L2 2727 2994 -425 6 1969 390 209 86 75 chr1 181527359 181527452 -15667980 - B1_Mur1 SINE Alu -34 115 22 6 1969 245 32 0 0 chr1 181527953 181527984 -15667448 + ID_B1 SINE B4 191 221 -3 6 1969 401 241 11 33 chr1 181528682 181528772 -15666660 + B1F SINE Alu 42 129 -20 6 1969 294 263 9 128 chr1 181528772 181528791 -15666641 + MT2B2 LTR ERVL 199 294 -290 7 1969 234 289 75 19 chr1 181528856 181528962 -15666470 - MIRm SINE MIR -164 112 1 7 1969 1230 41 0 0 chr1 181529082 181529228 -15666204 - B1_Mus2 SINE Alu 0 147 2 7 1969 1468 63 16 0 chr1 181529404 181529593 -15665839 - B2_Mm1a SINE B2 -1 192 1 7 1969 321 181 85 39 chr1 181529638 181529743 -15665689 - PB1 SINE Alu -29 120 17 7 1969 324 0 0 0 chr1 181529908 181529944 -15665488 + (TTG)n Simple_repeat Simple_repeat 3 38 0 7 1969 268 242 65 0 chr1 181530015 181530077 -15665355 - ID4_ SINE ID -4 79 14 7 1969 499 252 9 0 chr1 181530122 181530229 -15665203 + ID_B1 SINE B4 114 221 -3 7 1969 355 223 179 73 chr1 181530242 181530421 -15665011 + B3A SINE B2 1 198 0 7 1969 534 316 102 0 chr1 181530435 181530641 -15664791 + B4A SINE B4 2 228 -64 7 1969 671 165 28 0 chr1 181530645 181530754 -15664678 + PB1D9 SINE Alu 2 113 -7 8 1969 315 65 0 0 chr1 181531095 181531141 -15664291 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1969 521 264 7 46 chr1 181531147 181531298 -15664134 - RSINE1 SINE B4 -19 146 2 8 1969 225 0 0 0 chr1 181531307 181531332 -15664100 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1969 883 106 0 24 chr1 181531339 181531465 -15663967 - B1_Mus1 SINE Alu -24 124 2 8 1969 234 248 0 47 chr1 181531379 181531485 -15663947 - ORR1B1-int LTR MaLR -776 733 633 8 1969 192 141 51 45 chr1 181532547 181532703 -15662729 + (CAGAG)n Simple_repeat Simple_repeat 5 161 0 8 1969 188 138 52 44 chr1 181532767 181532903 -15662529 + (CAGAG)n Simple_repeat Simple_repeat 5 141 0 8 1969 345 173 45 51 chr1 181532916 181533093 -15662339 + (CAGAG)n Simple_repeat Simple_repeat 5 180 0 8 1969 395 161 45 51 chr1 181533176 181533353 -15662079 + (CAGAG)n Simple_repeat Simple_repeat 5 180 0 8 1969 411 163 46 50 chr1 181533376 181533682 -15661750 + (CAGAG)n Simple_repeat Simple_repeat 1 304 0 8 1969 25 0 0 0 chr1 181533961 181533986 -15661446 + AT_rich Low_complexity Low_complexity 1 25 0 8 1969 1158 22 0 0 chr1 181534417 181534556 -15660876 - B1_Mus2 SINE Alu 0 147 9 9 1969 693 193 22 76 chr1 181534556 181534600 -15660832 - ID_B1 SINE B4 0 222 50 9 1970 255 115 175 32 chr1 181534841 181534904 -15660528 + ID2 SINE ID 3 74 -9 9 1970 28 29 0 0 chr1 181535468 181535503 -15659929 + AT_rich Low_complexity Low_complexity 1 35 0 9 1970 244 44 67 0 chr1 181536965 181537010 -15658422 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 9 1970 351 194 42 0 chr1 181537103 181537175 -15658257 - HAL1-3A_ME LINE L1 -809 2049 1975 9 1970 519 201 0 0 chr1 181537178 181537337 -15658095 + (TG)n Simple_repeat Simple_repeat 1 159 0 9 1970 498 176 0 50 chr1 181537379 181537558 -15657874 + (TG)n Simple_repeat Simple_repeat 1 170 0 9 1970 476 281 24 16 chr1 181538036 181538159 -15657273 + ID_B1 SINE B4 87 210 -14 9 1970 489 34 0 0 chr1 181538171 181538230 -15657202 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1970 30 97 0 0 chr1 181539580 181539673 -15655759 + AT_rich Low_complexity Low_complexity 1 93 0 9 1970 226 106 43 0 chr1 181541582 181541629 -15653803 + (CCCCCA)n Simple_repeat Simple_repeat 5 53 0 1 1970 328 283 33 0 chr1 181541650 181541742 -15653690 + PB1D7 SINE Alu 16 110 -10 1 1970 190 0 67 0 chr1 181542056 181542086 -15653346 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1970 1079 64 0 21 chr1 181542086 181542229 -15653203 - B1_Mus2 SINE Alu -6 141 2 1 1970 423 0 0 0 chr1 181542493 181542540 -15652892 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1970 521 247 85 66 chr1 181542972 181543184 -15652248 - ID_B1 SINE B4 -8 216 1 1 1970 21 0 0 0 chr1 181543187 181543208 -15652224 + AT_rich Low_complexity Low_complexity 1 21 0 1 1970 340 230 54 0 chr1 181543964 181544038 -15651394 - RSINE1 SINE B4 -85 80 3 1 1970 386 273 36 18 chr1 181544048 181544160 -15651272 - PB1D7 SINE Alu -6 114 1 1 1970 572 172 154 15 chr1 181544299 181544429 -15651003 + B1_Mur1 SINE Alu 2 149 0 1 1970 883 235 24 24 chr1 181545118 181545327 -15650105 + B3 SINE B2 1 209 -7 1 1970 571 235 0 17 chr1 181545345 181545462 -15649970 + PB1D9 SINE Alu 3 117 -3 1 1970 1260 132 29 10 chr1 181545940 181546146 -15649286 - URR1A DNA MER1_type -6 220 11 1 1970 239 277 94 21 chr1 181546352 181546448 -15648984 - L2a LINE L2 -69 3357 3255 1 1970 1226 54 0 0 chr1 181546736 181546883 -15648549 + B1_Mus1 SINE Alu 2 148 0 1 1970 223 280 20 0 chr1 181547939 181547989 -15647443 + ID4 SINE ID 33 83 0 1 1970 396 242 0 0 chr1 181547993 181548125 -15647307 + GA-rich Low_complexity Low_complexity 1 132 0 1 1970 828 132 26 46 chr1 181548161 181548312 -15647120 - B1_Mur2 SINE Alu 0 149 2 1 1970 279 0 0 0 chr1 181548529 181548560 -15646872 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1 1970 320 271 129 0 chr1 181548562 181548702 -15646730 - Lx6 LINE L1 -46 7414 7257 1 1970 1229 258 31 36 chr1 181548715 181549140 -15646292 - Lx5 LINE L1 -612 7084 6381 1 1970 1172 48 7 0 chr1 181549847 181549992 -15645440 + B1_Mus2 SINE Alu 1 146 -1 1 1970 409 291 35 26 chr1 181550241 181550354 -15645078 + RSINE1 SINE B4 9 122 -43 1 1970 486 0 0 0 chr1 181550362 181550416 -15645016 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1970 392 243 115 18 chr1 181550484 181550597 -15644835 + PB1 SINE Alu 2 125 -2 1 1970 21 36 0 0 chr1 181550780 181550808 -15644624 + AT_rich Low_complexity Low_complexity 1 28 0 1 1970 270 295 107 27 chr1 181550822 181550972 -15644460 - RSINE1 SINE B4 -2 163 2 1 1970 467 214 134 22 chr1 181551164 181551298 -15644134 - RSINE1 SINE B4 -16 149 1 1 1970 492 18 0 0 chr1 181551744 181551801 -15643631 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1970 280 268 170 61 chr1 181551920 181552002 -15643430 - MER58A DNA MER1_type -15 209 123 1 1970 210 37 0 0 chr1 181552002 181552029 -15643403 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 1 1970 1448 75 0 16 chr1 181552036 181552226 -15643206 + B2_Mm2 SINE B2 2 188 -7 1 1970 280 268 170 61 chr1 181552226 181552282 -15643150 - MER58A DNA MER1_type -108 116 48 1 1970 302 229 52 29 chr1 181552309 181552393 -15643039 + PB1D10 SINE Alu 39 126 -23 1 1970 343 272 101 0 chr1 181552630 181552727 -15642705 + B1F SINE Alu 1 112 -8 1 1970 210 143 0 0 chr1 181553291 181553326 -15642106 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 1 1970 1126 171 24 10 chr1 181553908 181554115 -15641317 - B3 SINE B2 -3 213 4 1 1970 390 299 111 10 chr1 181554119 181554318 -15641114 - Charlie5 DNA MER1_type -33 2591 2373 1 1970 344 314 98 8 chr1 181554434 181554556 -15640876 - MER2 DNA MER2_type -2 343 211 1 1970 249 159 0 0 chr1 181554578 181554622 -15640810 + (CTG)n Simple_repeat Simple_repeat 1 44 0 1 1970 501 259 51 15 chr1 181554636 181554773 -15640659 - RSINE1 SINE B4 -21 144 3 1 1970 412 286 135 17 chr1 181554816 181554994 -15640438 - MER2 DNA MER2_type -129 216 18 1 1970 627 241 7 0 chr1 181557773 181557914 -15637518 - RSINE1 SINE B4 -21 144 3 1 1970 322 260 135 9 chr1 181559461 181559626 -15635806 + B4 SINE B4 10 206 -86 1 1970 233 213 0 0 chr1 181559651 181559698 -15635734 + B1F SINE Alu 102 148 -1 1 1970 458 252 37 22 chr1 181560255 181560389 -15635043 - RSINE1 SINE B4 0 165 30 1 1970 411 21 0 0 chr1 181560424 181560472 -15634960 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1970 320 272 31 2 chr1 181560489 181560628 -15634804 + L1M5 LINE L1 5335 5488 -845 1 1970 396 0 0 0 chr1 181561040 181561084 -15634348 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1970 1440 74 16 0 chr1 181561159 181561348 -15634084 + B2_Mm1t SINE B2 2 193 0 1 1970 22 0 0 0 chr1 181561799 181561821 -15633611 + AT_rich Low_complexity Low_complexity 1 22 0 1 1970 263 209 29 15 chr1 181562310 181562378 -15633054 + PB1D10 SINE Alu 33 101 -16 1 1970 330 280 70 0 chr1 181562755 181562855 -15632577 - B1F SINE Alu -6 143 37 1 1970 465 207 0 0 chr1 181563701 181563783 -15631649 - B3 SINE B2 -134 82 1 1 1970 477 0 0 0 chr1 181563784 181563837 -15631595 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1970 683 158 45 45 chr1 181563843 181563976 -15631456 + B1_Mus2 SINE Alu 10 142 -5 1 1970 544 266 57 25 chr1 181564398 181564556 -15630876 + RSINE1 SINE B4 3 165 0 1 1970 813 167 14 7 chr1 181565222 181565361 -15630071 - B1_Mur4 SINE Alu -9 141 2 1 1970 1022 270 58 14 chr1 181565437 181565715 -15629717 + B4 SINE B4 1 290 -2 1 1970 34252 72 2 16 chr1 181566260 181571500 -15623932 + L1Md_F2 LINE L1 287 5589 -297 1 1970 8338 42 1 8 chr1 181571500 181572503 -15622929 + L1Md_F2 LINE L1 5590 6585 0 1 1970 795 75 0 0 chr1 181572777 181572897 -15622535 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 1970 436 305 0 25 chr1 181572909 181573030 -15622402 - RSINE1 SINE B4 -28 137 20 1 1970 653 158 43 93 chr1 181573103 181573243 -15622189 + B1_Mus1 SINE Alu 1 133 -15 1 1970 185 0 0 39 chr1 181573245 181573271 -15622161 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1970 852 146 12 6 chr1 181573281 181573446 -15621986 + GA-rich Low_complexity Low_complexity 2 167 0 1 1970 270 0 0 0 chr1 181574790 181574820 -15620612 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1970 500 221 140 33 chr1 181574823 181574973 -15620459 + B3 SINE B2 40 205 -11 1 1970 670 206 22 7 chr1 181574998 181575135 -15620297 + B1_Mur4 SINE Alu 1 139 -11 1 1970 180 0 0 0 chr1 181575135 181575155 -15620277 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1970 923 143 7 0 chr1 181575641 181575788 -15619644 - B1_Mus1 SINE Alu 0 148 1 1 1970 383 270 144 68 chr1 181576182 181576432 -15619000 + LTR41 LTR ERVL 486 754 -14 1 1970 222 116 0 0 chr1 181576450 181576493 -15618939 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1970 23 0 0 0 chr1 181576535 181576558 -15618874 + AT_rich Low_complexity Low_complexity 1 23 0 1 1970 2163 151 164 7 chr1 181576799 181577251 -15618181 - RLTR28 LTR ERVL 0 524 2 1 1970 212 343 157 43 chr1 181577644 181577784 -15617648 - RSINE1 SINE B4 -6 159 4 1 1970 298 299 79 14 chr1 181577798 181577937 -15617495 - ORR1E LTR MaLR -211 148 1 1 1970 478 280 8 15 chr1 181578080 181578214 -15617218 - ID_B1 SINE B4 0 224 92 1 1970 1098 234 40 4 chr1 181578289 181578303 -15617129 - B4 SINE B4 -8 284 271 1 1970 417 20 0 0 chr1 181578303 181578353 -15617079 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1970 1098 234 40 4 chr1 181578353 181578612 -15616820 - B4 SINE B4 -22 270 2 1 1970 27 73 0 0 chr1 181578630 181578685 -15616747 + AT_rich Low_complexity Low_complexity 1 55 0 1 1970 21 0 0 0 chr1 181578760 181578781 -15616651 + AT_rich Low_complexity Low_complexity 1 21 0 1 1970 1764 16 0 0 chr1 181578781 181578974 -15616458 - B2_Mm1a SINE B2 0 193 1 1 1970 952 141 0 39 chr1 181579745 181579900 -15615532 + B1_Mur4 SINE Alu 2 150 0 1 1970 1977 116 80 28 chr1 181579949 181580339 -15615093 + RMER17C LTR ERVK 1 410 0 1 1970 636 240 96 15 chr1 181580339 181580538 -15614894 + ID_B1 SINE B4 10 224 0 1 1970 300 245 35 110 chr1 181580636 181580771 -15614661 + ORR1D1 LTR MaLR 216 370 -4 1 1970 196 324 0 14 chr1 181581255 181581324 -15614108 - MIRc SINE MIR -169 99 32 1 1970 4273 58 40 9 chr1 181581671 181582214 -15613218 + LTRIS2 LTR ERV1 5 564 0 1 1970 253 0 0 51 chr1 181582448 181582487 -15612945 + (TGGGGG)n Simple_repeat Simple_repeat 3 39 0 1 1970 267 323 10 39 chr1 181582913 181583016 -15612416 + PB1D10 SINE Alu 11 110 -7 1 1970 248 186 17 0 chr1 181583029 181583088 -15612344 + GA-rich Low_complexity Low_complexity 1 60 0 1 1970 191 175 0 17 chr1 181583472 181583530 -15611902 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1970 1483 130 148 0 chr1 181583730 181584014 -15611418 - MTC LTR MaLR -95 326 1 1 1970 565 157 168 13 chr1 181584014 181584163 -15611269 - MTC-int LTR MaLR 0 1258 1087 1 1970 3664 44 5 2 chr1 181584169 181584604 -15610828 + RLTR10C LTR ERVK 1 436 0 1 1970 2824 61 0 0 chr1 181584604 181584947 -15610485 + MMERVK10C-int LTR ERVK 1 343 -7238 1 1970 773 200 5 10 chr1 181584945 181585137 -15610295 + MMERVK10C-int LTR ERVK 729 919 -6662 1 1970 481 133 0 43 chr1 181585142 181585236 -15610196 + MMERVK10C-int LTR ERVK 863 952 -6629 1 1970 663 248 153 72 chr1 181585326 181585712 -15609720 + MMERVK10C-int LTR ERVK 2079 2425 -4819 1 1970 331 155 17 0 chr1 181585696 181585754 -15609678 + MMERVK10C-int LTR ERVK 1721 1779 -5627 1 1970 39286 17 24 10 chr1 181585761 181590794 -15604638 + MMERVK10C-int LTR ERVK 1885 7581 0 1 1970 3664 44 5 2 chr1 181590794 181591229 -15604203 + RLTR10C LTR ERVK 1 436 0 1 1970 4727 154 107 25 chr1 181591229 181591526 -15603906 - MTC-int LTR MaLR -166 1092 779 1 1970 189 0 0 0 chr1 181591526 181591547 -15603885 + (CTG)n Simple_repeat Simple_repeat 1 21 0 1 1970 4727 154 107 25 chr1 181591547 181591854 -15603578 - MTC-int LTR MaLR -480 778 467 1 1970 2548 148 2 19 chr1 181591854 181592268 -15603164 - MTB_Mm LTR MaLR 0 407 1 1 1970 4727 154 107 25 chr1 181592268 181592670 -15602762 - MTC-int LTR MaLR -792 466 3 1 1970 2456 125 32 7 chr1 181592673 181593076 -15602356 - MTC LTR MaLR -8 413 1 1 1970 1598 177 124 13 chr1 181593503 181593875 -15601557 - MTC LTR MaLR -8 413 1 1 1970 205 259 0 18 chr1 181594237 181594292 -15601140 + CT-rich Low_complexity Low_complexity 1 54 0 1 1970 1231 189 133 24 chr1 181594502 181594839 -15600593 - ORR1D1 LTR MaLR 0 374 1 1 1970 692 150 26 52 chr1 181594839 181594994 -15600438 - ORR1D1-int LTR MaLR 0 1370 1220 1 1970 246 81 0 0 chr1 181595008 181595045 -15600387 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1 1970 437 211 283 0 chr1 181595045 181595211 -15600221 - B4A SINE B4 -79 213 1 1 1970 750 141 21 43 chr1 181596221 181596362 -15599070 - B1_Mur4 SINE Alu 0 150 13 1 1970 279 250 66 118 chr1 181596241 181596377 -15599055 - B4A SINE B4 -79 213 85 2 1970 764 102 0 12 chr1 181596594 181596717 -15598715 + B3 SINE B2 1 119 -76 2 1970 1169 204 0 14 chr1 181596894 181597113 -15598319 - B3 SINE B2 0 216 1 2 1970 218 56 0 27 chr1 181597155 181597192 -15598240 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1970 554 157 34 34 chr1 181597207 181597326 -15598106 + B1_Mur3 SINE Alu 31 149 0 2 1970 29 0 0 0 chr1 181597867 181597896 -15597536 + AT_rich Low_complexity Low_complexity 1 29 0 2 1970 180 125 0 0 chr1 181598692 181598724 -15596708 + (CCGGG)n Simple_repeat Simple_repeat 5 36 0 2 1970 216 0 0 0 chr1 181599501 181599525 -15595907 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1970 1378 134 9 22 chr1 181599814 181600042 -15595390 + URR1B DNA MER1_type 1 225 0 2 1970 566 267 96 11 chr1 181600217 181600395 -15595037 + B3A SINE B2 1 193 -5 2 1970 519 316 13 13 chr1 181601089 181601246 -15594186 + RSINE1 SINE B4 3 159 -6 2 1970 571 138 54 12 chr1 181601592 181601760 -15593672 + CT-rich Low_complexity Low_complexity 2 176 0 2 1970 1190 45 0 22 chr1 181601765 181601947 -15593485 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 1970 676 167 9 0 chr1 181601950 181602064 -15593368 - B1_Mus2 SINE Alu -23 124 10 2 1970 463 195 17 0 chr1 181603090 181603208 -15592224 + CT-rich Low_complexity Low_complexity 1 120 0 2 1970 315 0 0 0 chr1 181603612 181603647 -15591785 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1970 252 200 32 32 chr1 181604000 181604062 -15591370 - B1F SINE Alu -7 142 81 2 1970 601 226 93 11 chr1 181604578 181604761 -15590671 - B3A SINE B2 0 198 1 2 1970 324 0 0 0 chr1 181605555 181605591 -15589841 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1970 417 323 48 0 chr1 181605968 181606092 -15589340 - RSINE1 SINE B4 -33 132 3 2 1970 516 243 109 133 chr1 181606163 181606457 -15588975 - B4 SINE B4 0 292 6 2 1970 231 159 0 22 chr1 181607000 181607045 -15588387 + ID4_ SINE ID 2 45 -38 2 1970 1610 115 26 111 chr1 181607049 181607400 -15588032 - ORR1A4 LTR MaLR -8 321 1 2 1970 357 295 115 0 chr1 181607407 181607563 -15587869 + ID_B1 SINE B4 51 224 0 2 1970 358 247 118 0 chr1 181607565 181607658 -15587774 + B1F2 SINE Alu 46 149 0 2 1970 262 292 15 0 chr1 181607679 181607744 -15587688 + tRNA-Ala-GCG tRNA tRNA 2 67 -8 2 1970 25 51 0 0 chr1 181607747 181607786 -15587646 + AT_rich Low_complexity Low_complexity 1 39 0 2 1970 702 103 2 1 chr1 181607844 181607958 -15587474 + B2_Mm2 SINE B2 1 115 -83 2 1970 318 129 0 0 chr1 181608393 181608455 -15586977 + (TTTG)n Simple_repeat Simple_repeat 1 62 0 2 1970 523 173 0 0 chr1 181608475 181608556 -15586876 - ID4 SINE ID -1 82 2 2 1970 1205 14 7 0 chr1 181609146 181609284 -15586148 + B1_Mus1 SINE Alu 2 140 -8 2 1970 216 86 0 0 chr1 181609284 181609319 -15586113 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1970 813 142 35 0 chr1 181610110 181610251 -15585181 + B1_Mus1 SINE Alu 3 148 0 2 1970 537 269 10 60 chr1 181611095 181611282 -15584150 + B1F SINE Alu 1 149 0 2 1970 360 244 0 0 chr1 181612084 181612162 -15583270 + PB1D10 SINE Alu 40 117 0 2 1970 676 231 145 0 chr1 181612171 181612318 -15583114 + B3 SINE B2 1 155 -61 2 1970 459 78 0 0 chr1 181612318 181612382 -15583050 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1970 676 231 145 0 chr1 181612382 181612420 -15583012 + B3 SINE B2 156 212 -4 2 1970 800 188 21 7 chr1 181612424 181612569 -15582863 - B1_Mus2 SINE Alu 0 147 1 2 1970 1685 21 0 0 chr1 181612840 181613032 -15582400 - B2_Mm1a SINE B2 0 193 2 2 1970 671 263 119 6 chr1 181613306 181613482 -15581950 - B3A SINE B2 -2 196 1 2 1970 851 147 28 0 chr1 181614020 181614163 -15581269 - B1_Mus1 SINE Alu 0 148 2 2 1970 22 0 0 0 chr1 181614559 181614581 -15580851 + AT_rich Low_complexity Low_complexity 1 22 0 2 1970 225 94 0 0 chr1 181614847 181614879 -15580553 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1970 620 154 5 48 chr1 181615406 181615519 -15579913 + PB1D9 SINE Alu 20 118 -2 2 1970 294 179 0 0 chr1 181615559 181615615 -15579817 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1970 880 218 132 0 chr1 181617596 181617793 -15577639 + ID_B1 SINE B4 1 223 -1 2 1970 22 35 0 0 chr1 181617962 181617991 -15577441 + AT_rich Low_complexity Low_complexity 1 29 0 2 1970 204 40 0 0 chr1 181617991 181618016 -15577416 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1970 1266 47 0 0 chr1 181618016 181618164 -15577268 - B1_Mus1 SINE Alu 0 148 1 2 1970 744 226 108 0 chr1 181618227 181618413 -15577019 + B3 SINE B2 1 206 -10 2 1970 336 169 59 44 chr1 181618472 181618540 -15576892 + B1_Mur2 SINE Alu 81 149 0 2 1970 348 175 144 0 chr1 181618540 181618637 -15576795 - L1MA6 LINE L1 -52 6248 6138 2 1970 420 306 156 42 chr1 181618910 181619289 -15576143 - Lx8 LINE L1 -3 7470 7049 2 1970 652 319 44 0 chr1 181619305 181619531 -15575901 - Lx8 LINE L1 -475 6998 6763 2 1970 182 37 37 0 chr1 181619548 181619575 -15575857 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2 1970 1137 64 0 0 chr1 181619577 181619717 -15575715 - B1_Mus1 SINE Alu -6 142 3 2 1970 379 304 68 0 chr1 181619744 181619905 -15575527 - L1M2 LINE L1 -545 5755 5584 2 1970 1138 149 53 0 chr1 181619920 181620108 -15575324 - RMER4B LTR ERVK 0 585 388 2 1970 4492 12 2 0 chr1 181620108 181620600 -15574832 - MT2_Mm LTR ERVL 0 493 1 2 1970 305 0 0 0 chr1 181620600 181620638 -15574794 - MERVL-int LTR ERVL 0 5485 5448 2 1970 399 167 46 35 chr1 181620638 181620725 -15574707 - ORR1A3-int LTR MaLR -1323 640 553 2 1970 22889 19 1 0 chr1 181620725 181623379 -15572053 - MERVL-int LTR ERVL -125 5360 2703 2 1970 3158 16 3 3 chr1 181623379 181623749 -15571683 - MT2_Mm LTR ERVL -123 370 1 2 1970 1597 130 121 106 chr1 181623749 181624135 -15571297 - RMER4B LTR ERVK -193 392 1 2 1970 202 360 13 13 chr1 181624151 181624227 -15571205 + MIR SINE MIR 164 239 -23 2 1970 1255 40 0 0 chr1 181624533 181624681 -15570751 + B1_Mus1 SINE Alu 1 148 0 2 1970 302 177 15 46 chr1 181624823 181624888 -15570544 + PB1D7 SINE Alu 58 120 0 2 1970 595 301 26 0 chr1 181624896 181625041 -15570391 + B3A SINE B2 3 151 -47 2 1970 725 25 58 0 chr1 181625041 181625161 -15570271 + (CA)n Simple_repeat Simple_repeat 1 127 0 2 1970 595 271 63 810 chr1 181625161 181625204 -15570228 + B3A SINE B2 152 194 -1 2 1970 259 273 65 103 chr1 181625214 181625369 -15570063 - MIR SINE MIR -97 165 17 2 1970 973 161 0 0 chr1 181625434 181625583 -15569849 - B1_Mur4 SINE Alu 0 150 2 2 1970 556 244 130 68 chr1 181626655 181626862 -15568570 - B4 SINE B4 -18 274 55 2 1970 1249 34 0 27 chr1 181627353 181627503 -15567929 + B1_Mm SINE Alu 2 147 0 2 1970 1075 97 7 14 chr1 181627633 181627779 -15567653 - B1_Mus1 SINE Alu 0 148 4 2 1970 33 25 0 0 chr1 181628089 181628129 -15567303 + AT_rich Low_complexity Low_complexity 1 40 0 2 1970 940 164 0 0 chr1 181628161 181628307 -15567125 - B1_Mus2 SINE Alu -1 146 1 2 1970 943 186 28 28 chr1 181628456 181628638 -15566794 + B3 SINE B2 6 187 -29 2 1970 934 117 14 21 chr1 181629849 181629989 -15565443 + B1_Mus2 SINE Alu 8 146 -1 2 1970 1700 21 0 0 chr1 181631209 181631399 -15564033 + B2_Mm1t SINE B2 2 191 -2 2 1970 187 192 36 121 chr1 181631584 181631667 -15563765 - L2a LINE L2 -34 3392 3317 2 1970 2552 181 24 28 chr1 181631839 181631980 -15563452 + RLTR16 LTR ERVK 8 145 -360 2 1970 378 0 0 0 chr1 181631980 181632022 -15563410 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1970 2552 181 24 28 chr1 181632022 181632380 -15563052 + RLTR16 LTR ERVK 146 505 0 2 1970 263 128 42 21 chr1 181632814 181632862 -15562570 - ORR1C2 LTR MaLR 0 384 336 2 1970 1650 31 11 0 chr1 181632884 181633075 -15562357 - B2_Mm1a SINE B2 0 193 1 2 1970 1494 63 0 10 chr1 181633083 181633275 -15562157 - B2_Mm2 SINE B2 -4 191 2 2 1970 441 0 0 0 chr1 181633648 181633697 -15561735 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1970 261 0 0 0 chr1 181634008 181634037 -15561395 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1970 627 178 0 201 chr1 181634037 181634206 -15561226 - B1_Mur4 SINE Alu -10 140 6 2 1970 1102 232 69 98 chr1 181634280 181634628 -15560804 + MTE2b LTR MaLR 1 338 -41 2 1970 1398 194 79 11 chr1 181634674 181635040 -15560392 + MTC LTR MaLR 8 417 -2 2 1970 183 42 0 0 chr1 181636112 181636136 -15559296 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1970 552 66 13 0 chr1 181636138 181636214 -15559218 - B1_Mus2 SINE Alu 0 147 71 2 1970 384 77 0 0 chr1 181636745 181636797 -15558635 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1970 4437 14 0 0 chr1 181636801 181637283 -15558149 + LTRIS_Mm LTR ERV1 1 482 0 2 1970 420 260 134 0 chr1 181637531 181637658 -15557774 + B1F1 SINE Alu 5 148 -1 2 1970 423 111 0 89 chr1 181638247 181638326 -15557106 + ID4 SINE ID 1 72 -11 2 1970 579 78 0 0 chr1 181638332 181638422 -15557010 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 1970 203 309 29 29 chr1 181639201 181639271 -15556161 - MIR3 SINE MIR -10 198 129 2 1970 544 271 179 6 chr1 181639909 181640262 -15555170 + L1MA4 LINE L1 5717 6130 -170 2 1970 1302 90 11 0 chr1 181640337 181640514 -15554918 + B2_Mm1t SINE B2 1 179 -14 2 1970 433 81 0 47 chr1 181640542 181640655 -15554777 + B2_Mm2 SINE B2 47 190 -5 2 1970 21 0 0 0 chr1 181640692 181640713 -15554719 + AT_rich Low_complexity Low_complexity 1 21 0 2 1970 1246 55 0 0 chr1 181640721 181640867 -15554565 - B1_Mus2 SINE Alu 0 147 2 2 1970 385 268 44 18 chr1 181641237 181641351 -15554081 + PB1D10 SINE Alu 1 117 0 2 1970 204 267 63 84 chr1 181641786 181641929 -15553503 + L2 LINE L2 467 606 -2813 3 1970 527 280 134 17 chr1 181642038 181642336 -15553096 + L1MB3 LINE L1 5818 6150 -33 3 1970 421 160 8 40 chr1 181642379 181642503 -15552929 + GA-rich Low_complexity Low_complexity 1 120 0 3 1970 836 175 65 11 chr1 181643645 181643830 -15551602 - B2_Mm2 SINE B2 0 195 1 3 1970 311 176 0 0 chr1 181644232 181644283 -15551149 + RMER30 DNA MER1_type 5 55 -147 3 1970 1566 57 5 0 chr1 181644748 181644940 -15550492 + B2_Mm1t SINE B2 1 193 0 3 1970 3306 82 22 7 chr1 181645119 181645574 -15549858 - RLTR1D LTR ERV1 -16 589 128 3 1970 482 226 0 99 chr1 181645614 181645756 -15549676 - RLTR1D LTR ERV1 -461 163 36 3 1970 443 302 37 0 chr1 181645822 181645984 -15549448 + CT-rich Low_complexity Low_complexity 1 168 0 3 1970 956 60 232 26 chr1 181646138 181646293 -15549139 + B2_Mm2 SINE B2 2 188 -7 3 1970 417 237 21 21 chr1 181646507 181646602 -15548830 - PB1D9 SINE Alu -17 103 9 3 1970 913 252 93 47 chr1 181646983 181647231 -15548201 + B4 SINE B4 1 264 -28 3 1970 315 85 0 0 chr1 181647231 181647278 -15548154 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1970 913 252 93 47 chr1 181647278 181647308 -15548124 + B4 SINE B4 265 292 0 3 1970 3271 109 13 17 chr1 181647372 181647415 -15548017 + MT2C_Mm LTR ERVL 1 43 -432 3 1970 2716 80 141 137 chr1 181647415 181647925 -15547507 + RLTR1B LTR ERV1 1 512 0 3 1970 3271 109 13 17 chr1 181647925 181648358 -15547074 + MT2C_Mm LTR ERVL 44 475 0 3 1970 9305 108 0 32 chr1 181648358 181649797 -15545635 + MERVL-int LTR ERVL 1 1393 -4092 3 1970 5379 88 8 9 chr1 181649795 181650475 -15544957 + MERVL-int LTR ERVL 4599 5284 -201 3 1970 3072 97 30 5 chr1 181650475 181650901 -15544531 + RLTR9B LTR ERVK 1 437 0 3 1970 5379 88 10 11 chr1 181650901 181650971 -15544461 + MERVL-int LTR ERVL 5285 5346 -139 3 1970 826 103 26 0 chr1 181650971 181651088 -15544344 + PB1D9 SINE Alu 1 120 0 3 1970 5113 121 66 53 chr1 181651088 181651246 -15544186 + MERVL-int LTR ERVL 5442 5622 -139 3 1970 313 215 12 37 chr1 181651247 181651329 -15544103 + ORR1A3-int LTR MaLR 561 640 -1323 3 1970 305 0 0 0 chr1 181651329 181651367 -15544065 + MERVL-int LTR ERVL 5448 5485 0 3 1970 3408 82 4 62 chr1 181651367 181651871 -15543561 + MT2C_Mm LTR ERVL 1 475 0 3 1970 1064 209 14 37 chr1 181651922 181652136 -15543296 - B3 SINE B2 -7 209 1 3 1970 29 28 0 0 chr1 181652144 181652180 -15543252 + AT_rich Low_complexity Low_complexity 1 36 0 3 1970 342 0 0 0 chr1 181652192 181652230 -15543202 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1970 516 257 55 7 chr1 181652241 181652386 -15543046 - RSINE1 SINE B4 -13 152 1 3 1970 1164 82 0 7 chr1 181652691 181652839 -15542593 + B1_Mus2 SINE Alu 1 147 0 3 1970 186 128 0 0 chr1 181652839 181652878 -15542554 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1970 213 135 0 55 chr1 181652886 181652941 -15542491 + A-rich Low_complexity Low_complexity 4 55 0 3 1970 372 291 0 11 chr1 181653026 181653113 -15542319 - MTEa LTR MaLR -236 143 58 3 1970 1461 206 138 81 chr1 181653139 181653594 -15541838 + RLTR40 LTR ERVK 1 481 -336 3 1970 236 239 0 0 chr1 181653758 181653804 -15541628 + B1F1 SINE Alu 15 60 -89 3 1970 2264 138 97 12 chr1 181653817 181654133 -15541299 + RLTR11B LTR ERVK 8 355 -98 3 1970 180 0 0 0 chr1 181654133 181654153 -15541279 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1970 2264 138 97 12 chr1 181654153 181654247 -15541185 + RLTR11B LTR ERVK 356 451 -2 3 1970 1154 59 0 0 chr1 181654531 181654667 -15540765 + B1_Mm SINE Alu 2 137 -10 3 1970 229 26 26 26 chr1 181654667 181654706 -15540726 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1970 1107 277 68 39 chr1 181654789 181655229 -15540203 + MYSERV6-int LTR ERVK 1628 2080 -6879 3 1970 1554 195 22 90 chr1 181655235 181655465 -15539967 + MYSERV-int LTR ERVK 6134 6353 -197 3 1970 1266 91 29 0 chr1 181655465 181655640 -15539792 + B2_Mm2 SINE B2 1 180 -15 3 1970 1209 55 7 0 chr1 181655640 181655785 -15539647 + B1_Mus2 SINE Alu 2 147 0 3 1970 1554 195 22 90 chr1 181655785 181655998 -15539434 + MYSERV-int LTR ERVK 6354 6547 -3 3 1970 2307 108 68 36 chr1 181655999 181656411 -15539021 + RLTR11B LTR ERVK 1 425 -28 3 1970 226 76 59 29 chr1 181656707 181656775 -15538657 + T-rich Low_complexity Low_complexity 2 71 0 3 1970 996 63 0 0 chr1 181656775 181656901 -15538531 - B1_Mus1 SINE Alu -21 127 2 3 1970 198 0 0 0 chr1 181657231 181657253 -15538179 + (CCCCCA)n Simple_repeat Simple_repeat 6 27 0 3 1970 373 258 48 16 chr1 181657290 181657416 -15538016 + RMER10B LTR ERVL 269 398 0 3 1970 23 33 0 0 chr1 181657576 181657606 -15537826 + AT_rich Low_complexity Low_complexity 1 30 0 3 1970 956 159 6 0 chr1 181657631 181657807 -15537625 + CT-rich Low_complexity Low_complexity 2 178 0 3 1970 987 161 0 0 chr1 181657845 181657988 -15537444 - B1_Mur4 SINE Alu -6 144 2 3 1970 22 0 0 0 chr1 181658018 181658040 -15537392 + AT_rich Low_complexity Low_complexity 1 22 0 3 1970 298 239 0 14 chr1 181658043 181658115 -15537317 + ID4 SINE ID 3 73 -10 3 1970 21 0 0 0 chr1 181658179 181658200 -15537232 + AT_rich Low_complexity Low_complexity 1 21 0 3 1970 653 219 131 0 chr1 181658887 181659047 -15536385 + B3A SINE B2 3 183 -15 3 1970 1176 62 14 0 chr1 181659067 181659211 -15536221 + B1_Mm SINE Alu 2 147 0 3 1970 3130 157 96 18 chr1 181659632 181660147 -15535285 + RMER1B Other Other 392 918 -148 3 1970 342 0 0 0 chr1 181660147 181660185 -15535247 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 3 1970 3130 157 96 18 chr1 181660185 181660293 -15535139 + RMER1B Other Other 919 1063 -3 3 1970 717 244 137 63 chr1 181660342 181660613 -15534819 + B4A SINE B4 2 292 0 3 1970 1973 147 60 3 chr1 181660998 181661346 -15534086 + ORR1D1 LTR MaLR 1 368 -6 3 1970 575 155 0 46 chr1 181661802 181661910 -15533522 - B1_Mur4 SINE Alu 0 150 48 3 1970 234 150 0 0 chr1 181662014 181662054 -15533378 + (TCTCCC)n Simple_repeat Simple_repeat 6 45 0 3 1970 218 167 0 0 chr1 181662212 181662248 -15533184 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1970 527 266 65 0 chr1 181662252 181662376 -15533056 - B4A SINE B4 -137 155 24 3 1970 313 256 46 11 chr1 181662390 181662477 -15532955 - MIRb SINE MIR -65 203 114 3 1970 552 273 28 21 chr1 181663517 181663659 -15531773 - RSINE1 SINE B4 -21 144 2 3 1970 1365 214 117 22 chr1 181663774 181664098 -15531334 + ORR1D1 LTR MaLR 20 374 0 3 1970 222 156 0 0 chr1 181664169 181664214 -15531218 + G-rich Low_complexity Low_complexity 1 45 0 3 1970 286 226 32 0 chr1 181664310 181664372 -15531060 + ID2 SINE ID 9 72 -11 3 1970 210 37 0 0 chr1 181664409 181664436 -15530996 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1970 216 130 0 0 chr1 181664439 181664485 -15530947 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1970 569 251 118 42 chr1 181664664 181664901 -15530531 + B4A SINE B4 37 291 -1 3 1970 245 176 58 19 chr1 181665010 181665062 -15530370 + B1F SINE Alu 23 76 -73 3 1970 193 212 0 43 chr1 181665062 181665131 -15530301 + GA-rich Low_complexity Low_complexity 3 68 0 3 246 1304 92 40 0 chr1 181665721 181665894 -15529538 + B2_Mm2 SINE B2 2 181 -14 3 1971 455 45 0 0 chr1 181665933 181666000 -15529432 + B2_Mm1a SINE B2 127 193 0 3 1971 703 239 145 35 chr1 181666652 181667000 -15528432 + Lx8 LINE L1 6959 7353 -120 3 1971 297 0 0 0 chr1 181667000 181667033 -15528399 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 1971 598 255 195 25 chr1 181667033 181667144 -15528288 + Lx8 LINE L1 7354 7467 -6 3 1971 871 227 45 15 chr1 181667184 181667385 -15528047 - B3 SINE B2 -9 207 1 3 1971 225 0 0 0 chr1 181667400 181667425 -15528007 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 1971 216 97 0 0 chr1 181667493 181667524 -15527908 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 3 1971 731 157 7 60 chr1 181667524 181667673 -15527759 - B1_Mur4 SINE Alu -6 144 4 3 1971 285 146 0 0 chr1 181667848 181667896 -15527536 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1971 991 53 114 0 chr1 181667898 181668029 -15527403 - B1_Mm SINE Alu 0 147 2 3 1971 677 203 8 0 chr1 181668149 181668267 -15527165 + B1_Mur1 SINE Alu 16 134 -15 3 1971 299 25 0 24 chr1 181668269 181668310 -15527122 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1971 1404 48 15 46 chr1 181668440 181668636 -15526796 - B2_Mm2 SINE B2 -4 191 2 3 1971 327 25 0 0 chr1 181668663 181668703 -15526729 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1971 625 274 0 13 chr1 181668703 181668858 -15526574 - B3A SINE B2 -44 154 2 3 1971 32 26 0 0 chr1 181668976 181669015 -15526417 + AT_rich Low_complexity Low_complexity 1 39 0 3 1971 532 250 42 0 chr1 181669015 181669135 -15526297 - RSINE1 SINE B4 -2 163 39 3 1971 1546 48 0 0 chr1 181669304 181669490 -15525942 + B2_Mm1t SINE B2 1 186 -7 3 1971 830 187 58 0 chr1 181670319 181670490 -15524942 + ORR1D1 LTR MaLR 1 181 -193 3 1971 222 37 0 0 chr1 181670492 181670519 -15524913 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1971 259 206 159 0 chr1 181670519 181670582 -15524850 - ORR1D1 LTR MaLR -211 163 91 3 1971 800 196 26 82 chr1 181670556 181670798 -15524634 + ORR1D1 LTR MaLR 150 383 -1 3 1971 212 184 0 20 chr1 181671884 181671934 -15523498 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 3 1971 570 254 58 0 chr1 181671940 181672078 -15523354 - RSINE1 SINE B4 0 165 20 3 1971 1295 165 136 14 chr1 181672076 181672371 -15523061 + ORR1D1 LTR MaLR 40 370 -4 3 1971 408 332 107 23 chr1 181673124 181673340 -15522092 - ORR1E LTR MaLR -115 244 11 3 1971 266 213 82 0 chr1 181674217 181674278 -15521154 - B3 SINE B2 -147 69 4 3 1971 512 302 78 11 chr1 181674751 181674942 -15520490 - ID_B1 SINE B4 -20 204 1 3 1971 23 0 0 0 chr1 181675184 181675207 -15520225 + AT_rich Low_complexity Low_complexity 1 23 0 3 1971 645 226 20 20 chr1 181677434 181677583 -15517849 - B1_Mur4 SINE Alu -1 149 1 3 1971 488 245 57 14 chr1 181678056 181678197 -15517235 - B1_Mur1 SINE Alu -1 148 2 3 1971 654 246 149 0 chr1 181678324 181678499 -15516933 - B3 SINE B2 -1 215 15 3 1971 270 296 42 0 chr1 181678560 181678631 -15516801 + PB1D10 SINE Alu 18 91 -26 3 1971 406 205 87 26 chr1 181679269 181679384 -15516048 + B1_Mur3 SINE Alu 28 149 0 3 1971 225 0 0 0 chr1 181680281 181680306 -15515126 + (CCA)n Simple_repeat Simple_repeat 1 25 0 3 1971 491 245 10 0 chr1 181680519 181680617 -15514815 - B4A SINE B4 -192 100 2 4 1971 911 152 0 7 chr1 181680870 181681016 -15514416 + B1_Mur4 SINE Alu 6 150 0 4 1971 450 331 92 16 chr1 181681509 181681693 -15513739 + B4A SINE B4 1 198 -94 4 1971 267 207 317 0 chr1 181681798 181681880 -15513552 - PB1D10 SINE Alu -9 108 1 4 1971 207 0 0 0 chr1 181682358 181682381 -15513051 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1971 242 229 68 41 chr1 181687049 181687122 -15508310 - B1_Mur2 SINE Alu -1 148 74 4 1971 1053 106 51 29 chr1 181687128 181687303 -15508129 - B2_Mm2 SINE B2 -16 179 1 4 1971 376 209 71 35 chr1 181687708 181687877 -15507555 + RMER17C LTR ERVK 92 266 -144 4 1971 193 70 70 0 chr1 181687877 181687920 -15507512 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 4 1971 25 65 0 0 chr1 181688271 181688317 -15507115 + AT_rich Low_complexity Low_complexity 1 46 0 4 1971 269 250 10 71 chr1 181688797 181688896 -15506536 + RLTR25B LTR ERVK 416 508 -520 4 1971 479 163 12 0 chr1 181688823 181688909 -15506523 + B1_Mus2 SINE Alu 40 126 -21 4 1971 213 277 45 30 chr1 181689552 181689619 -15505813 - PB1D10 SINE Alu -14 103 36 4 1971 383 203 40 0 chr1 181689764 181689838 -15505594 - B4A SINE B4 -62 230 154 4 1971 324 297 17 59 chr1 181689893 181690011 -15505421 - B3 SINE B2 -101 115 3 4 1971 586 245 27 54 chr1 181690026 181690173 -15505259 - B3A SINE B2 -36 162 20 4 1971 723 212 13 40 chr1 181690172 181690324 -15505108 - B1_Mur3 SINE Alu 0 149 2 4 1971 319 212 168 20 chr1 181690935 181691036 -15504396 + B1_Mus1 SINE Alu 33 148 0 4 1971 441 260 174 6 chr1 181691255 181691433 -15503999 - ID_B1 SINE B4 -16 208 1 4 1971 866 143 162 0 chr1 181691523 181691677 -15503755 + B2_Mm1t SINE B2 2 180 -13 4 1971 262 143 375 19 chr1 181691742 181691846 -15503586 + B2_Mm2 SINE B2 47 187 -8 4 1971 180 97 0 0 chr1 181691874 181691905 -15503527 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 4 1971 1164 55 14 0 chr1 181693883 181694029 -15501403 + B1_Mus1 SINE Alu 1 148 0 4 1971 229 64 64 0 chr1 181694029 181694076 -15501356 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 4 1971 1208 90 6 0 chr1 181694088 181694255 -15501177 + B2_Mm2 SINE B2 2 169 -26 4 1971 371 150 289 62 chr1 181694277 181694405 -15501027 + B2_Mm1t SINE B2 35 191 -2 4 1971 690 161 76 0 chr1 181694431 181694549 -15500883 + B1_Mus2 SINE Alu 16 142 -5 4 1971 401 339 30 30 chr1 181694862 181695029 -15500403 + ID_B1 SINE B4 53 219 -5 4 1971 455 224 65 0 chr1 181694927 181695034 -15500398 + B1F SINE Alu 36 149 0 4 1971 1388 75 27 0 chr1 181695055 181695243 -15500189 + B2_Mm1t SINE B2 1 193 0 4 1971 393 204 64 18 chr1 181695728 181695838 -15499594 + PB1D9 SINE Alu 1 115 -5 4 1971 200 205 0 0 chr1 181695842 181695881 -15499551 + A-rich Low_complexity Low_complexity 2 40 0 4 1971 249 108 0 0 chr1 181696492 181696529 -15498903 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 4 1971 245 339 0 0 chr1 181696545 181696607 -15498825 - B1F1 SINE Alu -87 62 1 4 1971 361 317 73 40 chr1 181696633 181696784 -15498648 + B4A SINE B4 69 224 -68 4 1971 711 188 83 0 chr1 181696653 181696786 -15498646 + B1_Mur4 SINE Alu 7 150 0 4 1971 1109 71 0 0 chr1 181696953 181697093 -15498339 - B1_Mus2 SINE Alu -6 141 2 4 1971 671 200 22 22 chr1 181697896 181698034 -15497398 - B1_Mur3 SINE Alu 0 149 12 4 1971 400 266 21 0 chr1 181698969 181699063 -15496369 + RSINE1 SINE B4 55 150 -15 4 1971 181 229 0 0 chr1 181700368 181700403 -15495029 - MIR SINE MIR -64 144 110 4 1971 525 226 19 136 chr1 181701263 181701417 -15494015 - B1_Mur2 SINE Alu -13 136 1 4 1971 734 255 163 84 chr1 181701824 181702015 -15493417 + ORR1D2 LTR MaLR 1 199 -171 4 1971 1237 27 7 0 chr1 181702015 181702161 -15493271 + B1_Mus2 SINE Alu 1 147 0 4 1971 734 255 163 84 chr1 181702161 181702312 -15493120 + ORR1D2 LTR MaLR 200 370 0 4 1971 378 276 132 47 chr1 181702454 181702644 -15492788 + ID_B1 SINE B4 2 207 -17 4 1971 232 316 66 0 chr1 181702767 181702843 -15492589 + ID2 SINE ID 2 82 -1 4 1971 2436 95 3 3 chr1 181702960 181703287 -15492145 + ORR1A2 LTR MaLR 1 327 0 4 1971 508 276 53 40 chr1 181703327 181703478 -15491954 - B3A SINE B2 -1 197 45 4 1971 690 268 39 25 chr1 181706998 181707201 -15488231 - B4A SINE B4 -86 206 1 4 1971 1282 201 58 3 chr1 181709078 181709407 -15486025 - L1_Mur3 LINE L1 -1358 4522 4176 4 1971 385 160 105 70 chr1 181709407 181709521 -15485911 + Lx7 LINE L1 7265 7382 -314 4 1971 31 58 0 0 chr1 181709604 181709656 -15485776 + AT_rich Low_complexity Low_complexity 1 52 0 4 1971 620 156 203 8 chr1 181709973 181710096 -15485336 - B1_Mur4 SINE Alu -2 148 2 4 1971 442 262 0 31 chr1 181710452 181710570 -15484862 + PB1D9 SINE Alu 22 127 -23 4 1971 370 272 93 29 chr1 181710577 181710717 -15484715 + B1F2 SINE Alu 1 149 0 4 1971 247 309 23 23 chr1 181712496 181712582 -15482850 + B1F SINE Alu 17 102 -47 4 1971 832 161 132 24 chr1 181712577 181712743 -15482689 - URR1A DNA MER1_type -42 184 1 4 1971 1562 22 38 0 chr1 181712851 181713036 -15482396 + B2_Mm1a SINE B2 2 193 0 4 1971 837 161 22 0 chr1 181713545 181713682 -15481750 + B1_Mur3 SINE Alu 6 145 -4 4 1971 680 20 10 10 chr1 181714086 181714187 -15481245 - L1Md_F3 LINE L1 -2 6582 6482 4 1971 228 240 91 26 chr1 181714422 181714499 -15480933 + PB1D7 SINE Alu 18 99 -21 4 1971 237 259 99 66 chr1 181714687 181714778 -15480654 - ID_B1 SINE B4 -2 222 129 4 1971 761 237 92 0 chr1 181714843 181715016 -15480416 - B3 SINE B2 -24 192 4 4 1971 1079 90 14 0 chr1 181715595 181715739 -15479693 + B1_Mm SINE Alu 2 147 0 4 1971 243 0 0 0 chr1 181715739 181715766 -15479666 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1971 290 242 63 42 chr1 181716353 181716368 -15479064 - MT2B2 LTR ERVL -311 273 177 4 1971 405 162 150 0 chr1 181716368 181716448 -15478984 - PB1D9 SINE Alu -16 104 13 4 1971 831 176 7 0 chr1 181716471 181716607 -15478825 - B1_Mus1 SINE Alu -10 138 2 4 1971 211 220 0 0 chr1 181718012 181718062 -15477370 + A-rich Low_complexity Low_complexity 1 50 0 4 1971 287 232 0 0 chr1 181718796 181718852 -15476580 - B1_Mur3 SINE Alu -4 145 90 4 1971 674 200 84 8 chr1 181718933 181719064 -15476368 - B1_Mur2 SINE Alu -8 141 1 4 1971 1413 49 54 0 chr1 181719241 181719425 -15476007 - B2_Mm2 SINE B2 0 195 2 4 1971 245 299 223 33 chr1 181720067 181720188 -15475244 + MLT1J LTR MaLR 88 231 -281 4 1971 328 260 10 50 chr1 181720927 181721028 -15474404 - ID_B1 SINE B4 -16 208 112 4 1971 354 336 87 7 chr1 181721097 181721235 -15474197 + RSINE1 SINE B4 4 152 -13 4 1971 604 291 20 0 chr1 181722775 181722926 -15472506 + RSINE1 SINE B4 10 163 -2 4 1971 908 154 25 41 chr1 181723146 181723342 -15472090 + B2_Mm2 SINE B2 1 193 -2 4 1971 387 0 0 0 chr1 181723486 181723529 -15471903 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 4 1971 466 174 22 0 chr1 181723617 181723709 -15471723 + B1_Mur3 SINE Alu 56 149 0 4 1971 185 200 0 0 chr1 181724155 181724195 -15471237 - MIR SINE MIR -5 257 218 4 1971 21 36 0 0 chr1 181724286 181724314 -15471118 + AT_rich Low_complexity Low_complexity 1 28 0 4 1971 724 102 0 7 chr1 181724366 181724482 -15470950 - L1M3 LINE L1 -2815 3325 3187 4 1971 1688 176 89 19 chr1 181724618 181724977 -15470455 + ORR1C2 LTR MaLR 1 384 0 4 1971 804 206 118 0 chr1 181725070 181725240 -15470192 + B3 SINE B2 2 191 -25 4 1971 416 284 35 21 chr1 181725304 181725448 -15469984 - B1_Mur1 SINE Alu -1 148 3 4 1971 552 282 6 79 chr1 181725464 181725641 -15469791 + RSINE1 SINE B4 2 165 0 4 1971 261 282 96 30 chr1 181725662 181725797 -15469635 - L1ME3A LINE L1 -3 6170 6027 4 1971 29 0 0 0 chr1 181726159 181726188 -15469244 + AT_rich Low_complexity Low_complexity 1 29 0 4 1971 274 240 214 20 chr1 181726704 181726802 -15468630 + PB1D10 SINE Alu 1 117 0 4 1971 662 291 74 12 chr1 181727040 181727284 -15468148 + RMER15 LTR ERVL 302 560 -15 4 1971 661 218 35 14 chr1 181727592 181727736 -15467696 + B1_Mur2 SINE Alu 1 147 -2 4 1971 838 236 54 25 chr1 181728230 181728434 -15466998 + B3 SINE B2 3 212 -4 4 1971 1140 56 21 7 chr1 181728683 181728827 -15466605 - B1_Mm SINE Alu 0 147 2 4 1971 436 311 88 22 chr1 181729041 181729222 -15466210 - B3A SINE B2 0 198 6 4 1971 26 0 0 0 chr1 181729472 181729498 -15465934 + AT_rich Low_complexity Low_complexity 1 26 0 4 1971 845 224 96 10 chr1 181730047 181730245 -15465187 + B3 SINE B2 2 216 0 4 1971 257 373 37 0 chr1 181730462 181730596 -15464836 + B1F2 SINE Alu 2 140 -9 4 1971 443 274 10 19 chr1 181730883 181730987 -15464445 - B1_Mur2 SINE Alu -45 104 2 4 1971 338 176 149 0 chr1 181731586 181731660 -15463772 + B1_Mur4 SINE Alu 45 129 -21 4 1971 934 59 86 29 chr1 181731912 181732051 -15463381 + B1_Mm SINE Alu 1 147 0 4 1971 232 170 0 0 chr1 181732051 181732098 -15463334 + A-rich Low_complexity Low_complexity 1 47 0 4 1971 234 277 36 12 chr1 181732209 181732293 -15463139 + PB1D7 SINE Alu 12 97 -23 5 1971 331 250 0 48 chr1 181732785 181732869 -15462563 + ID4 SINE ID 4 83 0 5 1971 34 42 0 0 chr1 181733417 181733465 -15461967 + GC_rich Low_complexity Low_complexity 1 48 0 5 1971 28 0 0 0 chr1 181733562 181733590 -15461842 + GC_rich Low_complexity Low_complexity 1 28 0 5 1971 693 185 0 22 chr1 181734886 181735024 -15460408 - B1_Mur3 SINE Alu -4 145 11 5 1971 415 155 119 0 chr1 181735256 181735340 -15460092 + B1_Mur4 SINE Alu 44 137 -13 5 1971 342 0 0 0 chr1 181735340 181735378 -15460054 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 1971 531 252 193 0 chr1 181735663 181735834 -15459598 - ID_B1 SINE B4 -20 204 1 5 1971 204 105 0 95 chr1 181736080 181736164 -15459268 + (CAGAGA)n Simple_repeat Simple_repeat 1 76 0 5 1971 233 288 0 0 chr1 181736196 181736208 -15459224 + B3 SINE B2 1 12 -204 5 1971 1120 68 7 7 chr1 181736208 181736355 -15459077 + B1_Mus2 SINE Alu 1 147 0 5 1971 233 288 0 0 chr1 181736355 181736408 -15459024 + B3 SINE B2 13 65 -151 5 1971 272 140 20 0 chr1 181736421 181736471 -15458961 - B1_Mus2 SINE Alu 0 147 97 5 1971 598 218 102 0 chr1 181736505 181736652 -15458780 + B3 SINE B2 54 215 -1 5 1971 201 200 0 24 chr1 181736901 181736942 -15458490 + T-rich Low_complexity Low_complexity 4 43 0 5 1971 282 315 0 69 chr1 181736963 181737079 -15458353 - PB1D10 SINE Alu 0 117 10 5 1971 538 287 57 0 chr1 181737002 181737159 -15458273 - ID_B1 SINE B4 -57 167 2 5 1971 403 259 0 100 chr1 181737849 181737969 -15457463 + PB1 SINE Alu 13 120 -7 5 1971 540 230 93 29 chr1 181737996 181738135 -15457297 + B1F SINE Alu 2 149 0 5 1971 244 296 24 24 chr1 181738173 181738256 -15457176 + ID4_ SINE ID 1 83 0 5 1971 320 274 106 33 chr1 181738934 181739085 -15456347 + B3A SINE B2 22 183 -15 5 1971 546 204 0 26 chr1 181739123 181739239 -15456193 + PB1D9 SINE Alu 1 113 -7 5 1971 864 82 0 0 chr1 181739239 181739374 -15456058 + (TG)n Simple_repeat Simple_repeat 2 136 0 5 1971 435 38 0 0 chr1 181739537 181739590 -15455842 + (TTTCC)n Simple_repeat Simple_repeat 3 55 0 5 1971 1115 82 14 0 chr1 181739592 181739738 -15455694 - B1_Mus1 SINE Alu 0 148 1 5 1971 260 194 14 43 chr1 181739825 181739895 -15455537 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1971 540 0 0 0 chr1 181739905 181739965 -15455467 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1971 519 227 114 54 chr1 181739983 181740132 -15455300 - B4A SINE B4 -119 173 16 5 1971 269 305 161 26 chr1 181740380 181740535 -15454897 + B3A SINE B2 23 198 0 5 1971 324 254 178 0 chr1 181740828 181740946 -15454486 - B1F SINE Alu 0 149 11 5 1971 639 268 71 20 chr1 181740946 181741144 -15454288 - ID_B1 SINE B4 -15 209 2 5 1971 234 0 0 0 chr1 181741191 181741217 -15454215 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1971 411 21 0 0 chr1 181741217 181741264 -15454168 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1971 462 222 80 10 chr1 181741267 181741367 -15454065 - RSINE1 SINE B4 -57 108 2 5 1971 224 313 8 115 chr1 181741583 181741713 -15453719 + PB1D9 SINE Alu 3 118 -2 5 1971 223 273 156 0 chr1 181741747 181741824 -15453608 - BC1_Mm scRNA scRNA -58 94 6 5 1971 448 217 67 0 chr1 181741887 181742006 -15453426 + MTC LTR MaLR 16 142 -279 5 1971 628 117 39 0 chr1 181742006 181742109 -15453323 + B2_Mm2 SINE B2 1 107 -88 5 1971 597 84 10 31 chr1 181742192 181742290 -15453142 + MTC LTR MaLR 121 216 -205 5 1971 21 0 0 0 chr1 181743283 181743304 -15452128 + GC_rich Low_complexity Low_complexity 1 21 0 5 1971 231 236 0 65 chr1 181743321 181743398 -15452034 + ID4 SINE ID 1 72 -11 5 1971 758 48 10 0 chr1 181743795 181743898 -15451534 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 5 1971 430 233 107 0 chr1 181743904 181744007 -15451425 - B1F1 SINE Alu -35 114 1 5 1971 570 15 0 0 chr1 181744016 181744083 -15451349 + (TTATG)n Simple_repeat Simple_repeat 1 67 0 5 1971 396 170 22 33 chr1 181744085 181744176 -15451256 - B1_Mur2 SINE Alu -15 134 45 5 1971 207 0 0 0 chr1 181744208 181744231 -15451201 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1971 329 271 0 78 chr1 181744581 181744697 -15450735 + PB1D10 SINE Alu 1 107 -10 5 1971 383 205 13 0 chr1 181744703 181744781 -15450651 + ID4 SINE ID 4 82 -1 5 1971 828 225 75 64 chr1 181745245 181745591 -15449841 + RLTR15 LTR ERVK 1 350 -9 5 1971 201 108 0 0 chr1 181745811 181745848 -15449584 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 5 1971 241 200 0 0 chr1 181745858 181745908 -15449524 + B4 SINE B4 167 216 -76 5 1971 293 229 70 40 chr1 181745960 181746060 -15449372 + Lx7 LINE L1 7563 7665 -31 5 1971 1214 54 0 0 chr1 181746110 181746257 -15449175 + B1_Mus2 SINE Alu 1 147 0 5 1971 683 148 35 9 chr1 181746304 181746420 -15449012 + PB1D9 SINE Alu 1 119 -1 5 1971 2690 138 26 67 chr1 181746474 181746939 -15448493 + RLTR41 LTR ERV1 1 446 0 5 1971 390 209 56 12 chr1 181747090 181747197 -15448235 - PB1D7 SINE Alu -4 123 4 5 1971 200 59 29 0 chr1 181747872 181747906 -15447526 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1971 17176 40 5 0 chr1 181748492 181750509 -15444923 + RLTR44-int LTR ERVK 816 2812 0 5 1971 2433 78 112 0 chr1 181750509 181750892 -15444540 + RLTR44E LTR ERVK 1 426 -26 5 1971 842 70 102 0 chr1 181750912 181751040 -15444392 - RLTR33 LTR ERVK -415 263 123 5 1971 2571 38 9 13 chr1 181751040 181751400 -15444032 - L1Md_F3 LINE L1 0 6584 6243 5 1971 766 133 15 7 chr1 181751411 181751547 -15443885 - RLTR33 LTR ERVK -541 137 1 5 1971 323 262 71 32 chr1 181751988 181752114 -15443318 + MLT1C LTR MaLR 1 131 -336 5 1971 279 188 56 28 chr1 181752226 181752297 -15443135 + ID SINE ID 2 74 -150 5 1971 407 55 0 0 chr1 181752332 181752387 -15443045 + ORR1A3 LTR MaLR 272 326 0 5 1971 580 211 45 78 chr1 181752520 181752674 -15442758 + B1_Mur1 SINE Alu 1 149 0 5 1971 751 192 6 6 chr1 181752674 181752842 -15442590 + GA-rich Low_complexity Low_complexity 3 170 0 5 1971 2682 127 28 37 chr1 181752875 181753340 -15442092 + RMER6B LTR ERVK 1 461 0 5 1971 372 255 0 21 chr1 181753447 181753543 -15441889 + B4A SINE B4 1 94 -198 5 1971 383 357 35 52 chr1 181753739 181754026 -15441406 - B4A SINE B4 0 292 11 5 1971 758 237 83 10 chr1 181754111 181754303 -15441129 + ID_B1 SINE B4 2 207 -17 5 1971 344 237 119 0 chr1 181754199 181754317 -15441115 + B1F SINE Alu 16 147 -2 5 1971 306 50 0 0 chr1 181755499 181755539 -15439893 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1971 495 264 70 21 chr1 181755543 181755686 -15439746 - B3A SINE B2 -35 163 14 5 1971 586 243 40 67 chr1 181755895 181755979 -15439453 + B1F1 SINE Alu 1 84 -65 5 1971 736 209 163 11 chr1 181755979 181756163 -15439269 + B3 SINE B2 1 212 -4 5 1971 586 243 40 67 chr1 181756163 181756228 -15439204 + B1F1 SINE Alu 85 146 -3 5 1971 391 316 0 33 chr1 181756246 181756389 -15439043 - B1F SINE Alu -10 139 1 5 1971 479 253 156 6 chr1 181756990 181757157 -15438275 + B3A SINE B2 1 192 -6 5 1971 801 145 8 0 chr1 181757161 181757285 -15438147 + B2_Mm2 SINE B2 1 125 -70 5 1971 261 0 0 0 chr1 181757324 181757353 -15438079 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1971 786 121 16 0 chr1 181757553 181757677 -15437755 + B1_Mur4 SINE Alu 25 150 0 5 1971 769 196 13 26 chr1 181758505 181758657 -15436775 + B1_Mur4 SINE Alu 1 150 0 5 1971 644 212 76 41 chr1 181758683 181758880 -15436552 + B3 SINE B2 3 206 -10 5 1971 351 211 0 14 chr1 181758910 181758982 -15436450 + PB1D10 SINE Alu 6 76 -41 5 1971 244 260 72 10 chr1 181759285 181759382 -15436050 + L2 LINE L2 2507 2609 -810 5 1971 810 162 13 7 chr1 181759430 181759579 -15435853 - RLTR17 LTR ERVK -77 615 466 5 1971 1082 52 8 0 chr1 181759595 181759729 -15435703 - B1_Mus1 SINE Alu -13 135 1 5 1971 347 160 38 51 chr1 181759800 181759879 -15435553 + RMER3D-int LTR ERVK 10 87 -2755 5 1971 1249 184 154 40 chr1 181759883 181760279 -15435153 + RLTR17 LTR ERVK 170 610 -82 5 1971 3635 163 10 8 chr1 181760341 181760952 -15434480 + MMVL30-int LTR ERV1 2994 3605 -93 5 1971 493 267 24 18 chr1 181760938 181761102 -15434330 + RLTR6-int LTR ERV1 7613 7777 -1 5 1971 473 210 0 40 chr1 181761714 181761838 -15433594 - MMVL30-int LTR ERV1 -2736 962 844 5 1971 388 70 0 0 chr1 181761921 181761978 -15433454 - MMVL30-int LTR ERV1 -2870 828 772 5 1971 345 145 0 0 chr1 181762597 181762659 -15432773 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1971 271 326 113 13 chr1 181762774 181763004 -15432428 - L2a LINE L2 -261 3165 2913 5 1971 496 329 110 7 chr1 181763076 181763367 -15432065 - L2a LINE L2 -620 2799 2479 5 1971 866 258 97 54 chr1 181764729 181764793 -15430639 - MTEb LTR MaLR -53 326 246 5 1971 3742 120 43 86 chr1 181764793 181765514 -15429918 + RMER6C LTR ERVK 1 690 0 5 1971 866 258 97 54 chr1 181765514 181765692 -15429740 - MTEb LTR MaLR -134 245 69 5 1971 2597 142 101 15 chr1 181765692 181766149 -15429283 + RLTR19A LTR ERVK 1 496 0 5 1971 866 258 97 54 chr1 181766149 181766184 -15429248 - MTEb LTR MaLR -311 68 36 5 1971 727 120 15 48 chr1 181766186 181766324 -15429108 + B1_Mur2 SINE Alu 9 143 -6 5 1971 186 43 0 0 chr1 181766324 181766347 -15429085 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1971 237 306 16 0 chr1 181766497 181766559 -15428873 - ID4_ SINE ID -20 63 1 5 1971 554 294 127 19 chr1 181766733 181767000 -15428432 + L1MEc LINE L1 165 460 -5940 5 1971 711 147 32 71 chr1 181767273 181767321 -15428111 + B1_Mur4 SINE Alu 2 50 -100 5 1971 2033 117 72 0 chr1 181767321 181767628 -15427804 + ORR1A4 LTR MaLR 1 329 0 5 1971 711 147 32 71 chr1 181767628 181767733 -15427699 + B1_Mur4 SINE Alu 51 149 -1 5 1971 481 122 0 13 chr1 181767793 181767868 -15427564 - B1_Mur4 SINE Alu -59 91 18 5 1971 206 105 26 0 chr1 181767877 181767915 -15427517 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 5 1971 1064 128 0 6 chr1 181768020 181768200 -15427232 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 6 1971 790 200 99 6 chr1 181768557 181768738 -15426694 + URR1B DNA MER1_type 1 198 -27 6 1971 195 42 0 0 chr1 181768894 181768918 -15426514 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 6 1971 838 246 65 10 chr1 181768932 181769133 -15426299 + ID_B1 SINE B4 2 213 -11 6 1971 752 221 7 0 chr1 181769159 181769304 -15426128 + RSINE1 SINE B4 12 157 -8 6 1971 274 61 41 0 chr1 181769346 181769395 -15426037 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 1971 1205 48 7 0 chr1 181769395 181769541 -15425891 - B1_Mus2 SINE Alu 0 147 1 6 1971 231 295 39 0 chr1 181769589 181769667 -15425765 + B4 SINE B4 44 124 -168 6 1971 231 317 17 0 chr1 181770071 181770131 -15425301 + B4A SINE B4 97 157 -135 6 1971 439 97 14 14 chr1 181770397 181770470 -15424962 - PB1 SINE Alu -2 125 53 6 1971 531 233 49 160 chr1 181770497 181770722 -15424710 + MTD LTR MaLR 1 200 -179 6 1971 258 194 0 0 chr1 181770968 181771030 -15424402 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1971 256 262 73 8 chr1 181771068 181771191 -15424241 - LTR16A1 LTR ERVL -14 442 312 6 1971 254 221 11 0 chr1 181771250 181771345 -15424087 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1971 1131 88 117 0 chr1 181771347 181771518 -15423914 + B2_Mm2 SINE B2 1 191 -4 6 1971 2331 21 31 14 chr1 181771522 181771810 -15423622 + L1Md_F3 LINE L1 6291 6583 -1 6 1971 30 45 0 0 chr1 181771845 181771889 -15423543 + AT_rich Low_complexity Low_complexity 1 44 0 6 1971 288 235 39 39 chr1 181772015 181772117 -15423315 - LTR16A1 LTR ERVL -298 158 57 6 1971 304 232 144 21 chr1 181772267 181772364 -15423068 + PB1 SINE Alu 7 115 -12 6 1971 340 259 49 49 chr1 181772457 181772579 -15422853 + B1F SINE Alu 1 122 -27 6 1971 683 260 16 22 chr1 181773330 181773515 -15421917 + B3A SINE B2 12 195 -3 6 1971 532 287 0 0 chr1 181773821 181773950 -15421482 + B3A SINE B2 22 150 -48 6 1971 288 0 0 0 chr1 181773955 181773987 -15421445 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1971 383 237 0 51 chr1 181774543 181774641 -15420791 + B4A SINE B4 1 93 -199 6 1971 266 19 56 37 chr1 181774643 181774697 -15420735 + L1_Mus2 LINE L1 6525 6582 0 6 1971 1080 241 107 19 chr1 181775308 181775647 -15419785 + MTD LTR MaLR 4 419 0 6 1971 216 97 0 0 chr1 181775728 181775759 -15419673 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 6 1971 1012 59 0 14 chr1 181775762 181775900 -15419532 - L1_Mus1 LINE L1 0 6567 6432 6 1971 996 208 61 86 chr1 181776015 181776377 -15419055 + MTEa LTR MaLR 21 373 -6 6 1971 444 116 0 14 chr1 181776461 181776531 -15418901 + RMER19B LTR ERVK 448 516 -386 6 1971 916 173 10 35 chr1 181776539 181776737 -15418695 + RMER19C LTR ERVK 419 611 0 6 1971 842 153 8 0 chr1 181776802 181776933 -15418499 + B1_Mur2 SINE Alu 1 132 -17 6 1971 728 42 0 10 chr1 181776937 181777034 -15418398 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 6 1971 373 242 8 8 chr1 181777063 181777192 -15418240 + (TA)n Simple_repeat Simple_repeat 2 130 0 6 1971 273 217 0 0 chr1 181777246 181777292 -15418140 - B1F SINE Alu -103 46 1 6 1971 481 219 170 25 chr1 181778734 181778747 -15416685 - ID_B1 SINE B4 0 224 212 6 1971 207 0 0 0 chr1 181778747 181778770 -15416662 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1971 481 219 170 25 chr1 181778770 181778915 -15416517 - ID_B1 SINE B4 -13 211 43 6 1971 277 277 168 106 chr1 181778989 181779292 -15416140 - ORR1E LTR MaLR -19 340 19 6 1971 417 76 38 0 chr1 181779559 181779638 -15415794 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 6 1971 282 246 5 29 chr1 181779777 181779868 -15415564 - MLT2B2 LTR ERVL -147 415 234 6 1971 399 225 22 0 chr1 181779949 181780087 -15415345 + (TG)n Simple_repeat Simple_repeat 1 141 0 6 1971 913 221 100 32 chr1 181780093 181780374 -15415058 + MTE2a LTR MaLR 71 370 -9 6 1971 1246 87 48 26 chr1 181780377 181780566 -15414866 + B2_Mm2 SINE B2 1 193 -2 6 1971 524 116 12 0 chr1 181780578 181780664 -15414768 + (GGA)n Simple_repeat Simple_repeat 3 89 0 6 1971 381 22 0 0 chr1 181780855 181780901 -15414531 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1971 866 312 9 19 chr1 181780901 181780970 -15414462 + L1MB3 LINE L1 5821 5889 -294 6 1971 1068 30 0 0 chr1 181780970 181781102 -15414330 + (TC)n Simple_repeat Simple_repeat 1 132 0 6 1971 866 312 9 19 chr1 181781102 181781352 -15414080 + L1MB3 LINE L1 5890 6137 -46 6 1971 490 257 14 42 chr1 181781357 181781499 -15413933 + RSINE1 SINE B4 2 139 -26 6 1971 30 0 0 0 chr1 181781521 181781551 -15413881 + AT_rich Low_complexity Low_complexity 1 30 0 6 1971 328 276 0 13 chr1 181781551 181781628 -15413804 - ID4 SINE ID -3 80 5 6 1971 518 232 72 0 chr1 181781693 181781831 -15413601 - B1F2 SINE Alu -1 148 1 6 1971 394 188 21 0 chr1 181781956 181782052 -15413380 + GA-rich Low_complexity Low_complexity 2 99 0 6 1971 273 246 16 0 chr1 181782914 181782975 -15412457 - ID_B1 SINE B4 -7 217 156 6 1971 204 327 114 9 chr1 181782987 181783092 -15412340 + L2b LINE L2 3244 3359 -16 6 1971 675 232 22 22 chr1 181783104 181783285 -15412147 + RMER16 LTR ERVK 353 533 0 6 1971 609 148 0 0 chr1 181783286 181783387 -15412045 + RMER19B LTR ERVK 1 101 -801 6 1971 788 120 22 8 chr1 181783472 181783606 -15411826 - B1_Mus1 SINE Alu -2 146 11 6 1971 385 312 71 43 chr1 181784996 181785062 -15410370 - MER5A DNA MER1_type 0 189 120 6 1971 1686 36 0 0 chr1 181785062 181785255 -15410177 - B2_Mm1a SINE B2 0 193 1 6 1971 385 312 71 43 chr1 181785255 181785372 -15410060 - MER5A DNA MER1_type -70 119 1 6 1971 625 233 81 12 chr1 181785425 181785586 -15409846 + B4A SINE B4 58 229 -63 6 1971 268 300 0 125 chr1 181785636 181785716 -15409716 + RSINE1 SINE B4 96 165 0 6 1971 256 224 0 146 chr1 181785756 181785845 -15409587 + B4A SINE B4 216 291 -1 6 1971 417 278 9 5 chr1 181785912 181786035 -15409397 + B1F2 SINE Alu 10 128 -21 6 1971 484 147 36 22 chr1 181786039 181786178 -15409254 + GA-rich Low_complexity Low_complexity 2 142 0 6 1971 1290 95 6 16 chr1 181786199 181786381 -15409051 + B2_Mm1a SINE B2 1 180 -13 6 1971 1301 95 39 11 chr1 181786384 181786565 -15408867 + B2_Mm2 SINE B2 1 186 -9 6 1971 461 233 0 0 chr1 181786944 181787047 -15408385 - PB1 SINE Alu -23 104 2 6 1971 1464 69 0 11 chr1 181787484 181787674 -15407758 - B2_Mm2 SINE B2 -6 189 2 6 1971 738 177 272 0 chr1 181787804 181787966 -15407466 - B3 SINE B2 -9 207 2 6 1971 189 0 0 0 chr1 181788122 181788143 -15407289 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6 1971 1177 50 0 0 chr1 181788145 181788284 -15407148 - B1_Mus1 SINE Alu -7 141 3 6 1971 606 287 62 18 chr1 181788518 181788745 -15406687 + L1MA4 LINE L1 5681 5917 -383 6 1971 378 196 0 98 chr1 181788747 181788849 -15406583 - ID_B1 SINE B4 -3 221 130 6 1971 258 257 54 90 chr1 181788750 181788861 -15406571 - B1F SINE Alu -6 143 37 6 1971 351 280 60 0 chr1 181789127 181789227 -15406205 - Tigger5 DNA MER2_type 0 2406 2301 6 1971 381 288 81 40 chr1 181789257 181789431 -15406001 - Tigger5 DNA MER2_type -2190 216 36 6 1971 388 286 75 0 chr1 181789763 181789896 -15405536 - B3A SINE B2 -16 182 40 6 1971 426 237 0 0 chr1 181789924 181790042 -15405390 + CT-rich Low_complexity Low_complexity 2 119 0 6 1971 232 279 0 0 chr1 181790043 181790104 -15405328 - ID4_ SINE ID -11 72 12 6 1971 270 0 0 0 chr1 181790527 181790557 -15404875 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1971 1049 174 71 5 chr1 181792451 181792647 -15402785 - B3 SINE B2 -7 209 1 6 1971 273 164 0 0 chr1 181792680 181792753 -15402679 + (CCA)n Simple_repeat Simple_repeat 1 73 0 6 1971 204 107 0 0 chr1 181792753 181792781 -15402651 + (CAT)n Simple_repeat Simple_repeat 3 30 0 6 1971 290 238 218 0 chr1 181792782 181792883 -15402549 - RSINE1 SINE B4 -35 130 8 6 1971 480 59 0 0 chr1 181793519 181793587 -15401845 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1971 189 0 0 0 chr1 181793738 181793759 -15401673 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 1971 610 234 14 14 chr1 181793986 181794125 -15401307 - ID_B1 SINE B4 0 224 86 6 1971 315 0 0 0 chr1 181794288 181794323 -15401109 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 1971 292 148 0 50 chr1 181794335 181794403 -15401029 - B2_Mm2 SINE B2 -107 109 47 6 1971 1232 107 11 17 chr1 181794471 181794651 -15400781 - B2_Mm1t SINE B2 -14 179 1 6 1971 2095 184 21 17 chr1 181794659 181795078 -15400354 - MTC LTR MaLR 0 421 1 6 1972 1282 156 8 67 chr1 181797379 181797619 -15397813 - URR1A DNA MER1_type 0 226 1 6 1972 261 0 0 0 chr1 181797634 181797663 -15397769 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1972 292 316 73 29 chr1 181797684 181797821 -15397611 + ORR1E LTR MaLR 1 143 -216 6 1972 195 129 0 0 chr1 181797959 181797990 -15397442 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1972 989 200 13 31 chr1 181798384 181798611 -15396821 - URR1B DNA MER1_type 0 225 3 6 1972 403 258 0 0 chr1 181799082 181799179 -15396253 + BC1_Mm scRNA scRNA 1 97 -55 6 1972 992 75 0 8 chr1 181799304 181799438 -15395994 - B1_Mur4 SINE Alu -17 133 1 6 1972 268 232 14 14 chr1 181799841 181799911 -15395521 + MER44B DNA MER2_type 48 117 -433 6 1972 414 0 0 0 chr1 181799963 181800009 -15395423 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1972 333 0 0 0 chr1 181800009 181800045 -15395387 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1972 329 188 0 0 chr1 181801260 181801324 -15394108 - PB1D10 SINE Alu -20 97 34 6 1972 198 0 0 0 chr1 181801477 181801499 -15393933 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1972 1258 160 51 9 chr1 181802016 181802231 -15393201 + URR1A DNA MER1_type 1 224 -2 6 1972 825 182 0 20 chr1 181802580 181802726 -15392706 - B1_Mus1 SINE Alu 0 148 6 7 1972 1124 109 0 6 chr1 181802742 181802918 -15392514 + (TTC)n Simple_repeat Simple_repeat 3 177 0 7 1972 249 246 0 0 chr1 181802922 181802987 -15392445 + CT-rich Low_complexity Low_complexity 1 65 0 7 1972 428 180 92 0 chr1 181802987 181803093 -15392339 - PB1D7 SINE Alu -2 125 4 7 1972 253 0 54 0 chr1 181803159 181803196 -15392236 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 7 1972 457 306 47 7 chr1 181803376 181803524 -15391908 - RSINE1 SINE B4 -9 156 3 7 1972 733 243 111 9 chr1 181803524 181803730 -15391702 - B4A SINE B4 -59 233 6 7 1972 276 254 15 0 chr1 181804880 181804947 -15390485 + ID SINE ID 8 75 -149 7 1972 624 91 0 0 chr1 181804955 181805043 -15390389 + (CAATG)n Simple_repeat Simple_repeat 2 89 0 7 1972 246 303 0 0 chr1 181805083 181805149 -15390283 + MIR SINE MIR 36 101 -107 7 1972 279 0 0 0 chr1 181805277 181805308 -15390124 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 7 1972 534 31 0 0 chr1 181805308 181805371 -15390061 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 1972 668 247 139 5 chr1 181805371 181805558 -15389874 - ID_B1 SINE B4 -5 219 8 7 1972 704 53 0 0 chr1 181805694 181805788 -15389644 + B1_Mus2 SINE Alu 54 147 0 7 1972 506 226 57 0 chr1 181805838 181805944 -15389488 - PB1D7 SINE Alu -7 113 2 7 1972 244 330 80 0 chr1 181805956 181806068 -15389364 - L1MA7 LINE L1 -172 6119 5999 7 1972 30 0 0 0 chr1 181807393 181807423 -15388009 + AT_rich Low_complexity Low_complexity 1 30 0 7 1972 2471 140 47 17 chr1 181808484 181808892 -15386540 - MTC LTR MaLR -1 420 1 7 1972 213 39 0 0 chr1 181809675 181809701 -15385731 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1972 343 278 83 0 chr1 181809770 181809903 -15385529 - B3 SINE B2 0 216 73 7 1972 7577 91 19 21 chr1 181809913 181810980 -15384452 + Lx LINE L1 5589 6653 -1 7 1972 230 132 0 0 chr1 181810997 181811035 -15384397 - B3 SINE B2 -178 38 1 7 1972 508 158 59 0 chr1 181811264 181811365 -15384067 + B1_Mur1 SINE Alu 41 147 -2 7 1972 576 267 4 43 chr1 181811531 181811719 -15383713 + MER63A DNA AcHobo 8 163 -47 7 1972 761 198 119 50 chr1 181811719 181811921 -15383511 - B3 SINE B2 0 216 1 7 1972 31 0 0 0 chr1 181812392 181812423 -15383009 + AT_rich Low_complexity Low_complexity 1 31 0 7 1972 319 241 25 0 chr1 181812563 181812642 -15382790 - ID4_ SINE ID -1 82 2 7 1972 22 0 0 0 chr1 181812886 181812908 -15382524 + AT_rich Low_complexity Low_complexity 1 22 0 7 1972 483 155 0 0 chr1 181813380 181813464 -15381968 + GA-rich Low_complexity Low_complexity 2 85 0 7 1972 1548 182 86 59 chr1 181813565 181813761 -15381671 - ORR1C2 LTR MaLR 0 384 189 7 1972 276 102 0 0 chr1 181813761 181813810 -15381622 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 7 1972 1548 182 86 59 chr1 181813810 181813987 -15381445 - ORR1C2 LTR MaLR -196 188 3 7 1972 393 219 16 60 chr1 181814073 181814195 -15381237 + B1F2 SINE Alu 7 117 -32 7 1972 486 0 0 0 chr1 181814205 181814259 -15381173 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1972 356 369 73 32 chr1 181814348 181814692 -15380740 + L1MEd LINE L1 877 1234 -4902 7 1972 973 224 5 28 chr1 181814696 181814912 -15380520 + B3 SINE B2 1 211 -5 7 1972 340 257 184 15 chr1 181814950 181815168 -15380264 + B4A SINE B4 2 263 -29 7 1972 278 314 40 34 chr1 181815358 181815533 -15379899 + L1MEd LINE L1 1427 1602 -4564 7 1972 226 274 71 0 chr1 181815712 181815825 -15379607 + L1MEd LINE L1 2749 2869 -3277 7 1972 213 323 32 0 chr1 181815967 181816029 -15379403 + B1F1 SINE Alu 5 68 -81 7 1972 423 279 36 22 chr1 181816071 181816210 -15379222 + RSINE1 SINE B4 8 148 -17 7 1972 511 189 23 3 chr1 181816238 181816642 -15378790 + (CA)n Simple_repeat Simple_repeat 1 412 0 7 1972 548 177 20 3 chr1 181816655 181817007 -15378425 + (CA)n Simple_repeat Simple_repeat 1 358 0 7 1972 553 274 68 50 chr1 181817147 181817463 -15377969 - MLT1C LTR MaLR -2 503 181 7 1972 507 227 78 7 chr1 181817532 181817674 -15377758 - RSINE1 SINE B4 -12 153 2 7 1972 273 276 0 0 chr1 181817686 181817762 -15377670 - MLT1C LTR MaLR -297 170 95 7 1972 603 40 0 0 chr1 181817891 181817965 -15377467 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 1972 443 302 32 32 chr1 181817966 181818120 -15377312 - ID_B1 SINE B4 -1 223 70 7 1972 214 348 14 0 chr1 181818194 181818263 -15377169 - ID4 SINE ID -11 72 3 7 1972 287 231 51 0 chr1 181818323 181818401 -15377031 + ID4_ SINE ID 2 83 0 7 1972 267 155 167 14 chr1 181819365 181819437 -15375995 - MTD LTR MaLR 0 419 337 7 1972 986 131 16 37 chr1 181819431 181819622 -15375810 - RLTR11A2 LTR ERVK -340 187 1 7 1972 379 260 60 95 chr1 181819752 181819808 -15375624 - MTD LTR MaLR -124 255 196 7 1972 368 0 0 41 chr1 181819808 181819857 -15375575 + (CACG)n Simple_repeat Simple_repeat 4 50 0 7 1972 385 286 54 67 chr1 181819857 181820081 -15375351 - MTD LTR MaLR -220 199 11 7 1972 198 0 0 0 chr1 181820181 181820203 -15375229 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1972 280 293 94 35 chr1 181820652 181820822 -15374610 + ORR1E LTR MaLR 21 200 -159 7 1972 180 313 19 68 chr1 181821022 181821125 -15374307 + L2c LINE L2 3289 3386 -1 7 1972 257 294 189 6 chr1 181821258 181821422 -15374010 + MER3 DNA MER1_type 16 209 0 7 1972 286 225 24 48 chr1 181821843 181821927 -15373505 - RSINE1 SINE B4 0 165 84 7 1972 321 294 0 0 chr1 181822010 181822102 -15373330 + ID_B1 SINE B4 133 224 0 7 1972 965 160 0 0 chr1 181822423 181822567 -15372865 - B1_Mur2 SINE Alu -5 144 1 7 1972 440 206 8 38 chr1 181822598 181822715 -15372717 - PB1 SINE Alu 0 120 17 7 1972 424 203 117 105 chr1 181823859 181824030 -15371402 + MTE2a LTR MaLR 1 173 -206 7 1972 2174 102 40 56 chr1 181824038 181824434 -15370998 + IAPLTR2a LTR ERVK 22 411 0 7 1972 58015 17 6 4 chr1 181824444 181830882 -15364550 + IAPEz-int LTR ERVK 35 6481 0 7 1972 2512 101 38 53 chr1 181830882 181831299 -15364133 + IAPLTR2a LTR ERVK 1 411 0 7 1972 707 219 18 6 chr1 181831398 181831563 -15363869 + MTE2a LTR MaLR 213 379 0 7 1972 627 311 107 95 chr1 181831678 181832094 -15363338 - L1ME1 LINE L1 -73 6106 5678 7 1972 301 182 149 15 chr1 181832094 181832161 -15363271 - ID4_ SINE ID -5 78 3 7 1972 627 311 107 95 chr1 181832161 181832501 -15362931 - L1ME1 LINE L1 -502 5677 5341 7 1972 1319 59 27 11 chr1 181832549 181835993 -15359439 + (TCTA)n Simple_repeat Simple_repeat 1 3500 0 7 1972 581 306 0 0 chr1 181836003 181836137 -15359295 - RSINE1 SINE B4 -29 136 3 7 1972 411 21 0 0 chr1 181836195 181836243 -15359189 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1972 207 0 0 0 chr1 181836243 181836265 -15359167 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1972 859 280 34 11 chr1 181836269 181836536 -15358896 - B4A SINE B4 -19 273 1 7 1972 368 286 22 0 chr1 181836669 181836760 -15358672 - L1MCa LINE L1 -6065 443 351 7 1972 347 0 23 0 chr1 181836827 181836870 -15358562 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1972 488 252 25 42 chr1 181836870 181836990 -15358442 - B1F2 SINE Alu -10 139 22 7 1972 933 147 107 78 chr1 181837105 181837348 -15358084 + ORR1C2 LTR MaLR 1 250 -134 7 1972 698 284 19 99 chr1 181837360 181837622 -15357810 - B4 SINE B4 -6 286 46 7 1972 389 317 48 36 chr1 181837625 181837792 -15357640 - L1MCa LINE L1 -6208 300 132 7 1972 286 286 52 45 chr1 181837886 181838040 -15357392 - L1MC LINE L1 -936 5210 5056 7 1972 201 335 48 59 chr1 181838054 181838241 -15357191 + L2 LINE L2 2801 2985 -434 7 1972 505 180 0 29 chr1 181838267 181838370 -15357062 - B1_Mur2 SINE Alu -12 137 38 7 1972 759 248 86 15 chr1 181838529 181838726 -15356706 - B3 SINE B2 -4 212 2 7 1972 3568 169 80 39 chr1 181838841 181839563 -15355869 - RMER1A Other Other -1 1029 278 7 1972 216 0 0 0 chr1 181839880 181839904 -15355528 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1972 552 198 140 53 chr1 181839904 181840066 -15355366 - B3 SINE B2 -35 181 4 7 1972 1698 164 22 42 chr1 181840630 181841087 -15354345 - RMER17C LTR ERVK -519 439 16 7 1972 827 286 47 29 chr1 181841214 181841713 -15353719 + L1M4 LINE L1 5132 5630 -548 7 1972 235 288 97 69 chr1 181841897 181842072 -15353360 + ORR1E LTR MaLR 18 197 -162 7 1972 190 257 127 14 chr1 181842615 181842686 -15352746 + MIRm SINE MIR 70 148 -128 7 1972 706 184 45 52 chr1 181842695 181842850 -15352582 + RSINE1 SINE B4 2 155 -10 7 1972 21 0 0 0 chr1 181842850 181842871 -15352561 + AT_rich Low_complexity Low_complexity 1 21 0 7 1972 554 294 32 5 chr1 181843173 181843361 -15352071 + MTE2b LTR MaLR 2 194 -185 7 1972 267 173 0 0 chr1 181843424 181843476 -15351956 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1972 556 253 6 55 chr1 181844023 181844186 -15351246 - RSINE1 SINE B4 -2 163 9 7 1972 288 222 161 0 chr1 181844222 181844303 -15351129 - B1F2 SINE Alu -44 105 12 7 1972 857 166 227 6 chr1 181844446 181844622 -15350810 + B3 SINE B2 2 216 0 7 1972 195 162 0 0 chr1 181844833 181844870 -15350562 + CT-rich Low_complexity Low_complexity 2 38 0 7 1972 270 0 0 0 chr1 181845326 181845356 -15350076 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1972 395 253 63 0 chr1 181845358 181845453 -15349979 - PB1D7 SINE Alu -13 107 7 7 1972 283 246 0 0 chr1 181845399 181845460 -15349972 - B4A SINE B4 -147 145 85 7 1972 318 328 70 8 chr1 181845647 181845776 -15349656 + ID_B1 SINE B4 86 222 -2 7 1972 1411 214 101 14 chr1 181845954 181846300 -15349132 - MTD LTR MaLR -39 380 5 7 1972 405 0 0 0 chr1 181847008 181847053 -15348379 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1972 235 0 28 28 chr1 181848318 181848354 -15347078 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1972 212 100 0 24 chr1 181849619 181849660 -15345772 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 7 1972 349 159 0 28 chr1 181849831 181849902 -15345530 - MER5A1 DNA MER1_type -37 129 61 7 1972 444 197 0 0 chr1 181849992 181850068 -15345364 + ID4 SINE ID 4 79 -4 7 1972 626 229 27 60 chr1 181850686 181850835 -15344597 - RSINE1 SINE B4 0 165 22 8 1972 1171 132 20 5 chr1 181850836 181851034 -15344398 - URR1A DNA MER1_type 0 226 26 8 1972 954 252 110 41 chr1 181851029 181851347 -15344085 + MTE2b LTR MaLR 33 372 -7 8 1972 308 232 29 0 chr1 181851549 181851618 -15343814 - ID4 SINE ID -4 79 9 8 1972 676 296 14 18 chr1 181851887 181852104 -15343328 - ID_B1 SINE B4 -8 216 1 8 1972 350 292 54 59 chr1 181852254 181852458 -15342974 - ALINE LINE RTE -407 210 8 8 1972 288 221 0 140 chr1 181852458 181852558 -15342874 + MT2B2 LTR ERVL 167 252 -332 8 1972 514 248 23 30 chr1 181852477 181852610 -15342822 + B1F SINE Alu 18 149 0 8 1972 409 209 190 41 chr1 181852778 181852953 -15342479 + MLT1D LTR MaLR 1 205 -300 8 1972 2740 106 15 15 chr1 181852953 181853347 -15342085 - ORR1B1 LTR MaLR 0 394 1 8 1972 409 209 190 41 chr1 181853347 181853366 -15342066 + MLT1D LTR MaLR 206 224 -281 8 1972 382 301 44 22 chr1 181853454 181853590 -15341842 + MLT1D LTR MaLR 367 505 0 8 1972 575 347 42 12 chr1 181853780 181854115 -15341317 + L2a LINE L2 981 1325 -2094 8 1972 237 65 0 0 chr1 181855020 181855051 -15340381 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1972 586 330 118 33 chr1 181855754 181856203 -15339229 + L2a LINE L2 2936 3422 -4 8 1972 466 146 21 0 chr1 181856248 181856344 -15339088 - MER53 DNA hAT -94 99 2 8 1972 251 28 0 27 chr1 181856919 181856956 -15338476 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 8 1972 304 348 99 23 chr1 181857350 181857612 -15337820 - ERVL-B4-int LTR ERVL -731 4983 4702 8 1972 2676 106 81 0 chr1 181857967 181858373 -15337059 - BGLII_B LTR ERVK -2 439 1 8 1972 259 349 43 82 chr1 181858709 181858940 -15336492 - ORR1E LTR MaLR -42 317 96 8 1972 296 289 67 59 chr1 181859335 181859593 -15335839 - LTR16A LTR ERVL -113 338 1 8 1972 498 205 79 15 chr1 181860007 181860204 -15335228 + MTD LTR MaLR 187 405 -14 8 1972 236 192 37 37 chr1 181860699 181860726 -15334706 + polypyrimidine Low_complexity Low_complexity 58 82 0 8 1972 198 0 0 0 chr1 181860726 181860748 -15334684 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 8 1972 236 192 37 37 chr1 181860748 181860801 -15334631 + CT-rich Low_complexity Low_complexity 2 57 0 8 1972 1197 246 49 10 chr1 181861360 181861664 -15333768 + MTEb LTR MaLR 1 316 -63 8 1972 556 210 8 16 chr1 181861850 181861971 -15333461 + B4A SINE B4 129 248 -44 8 1972 719 327 10 5 chr1 181862517 181862717 -15332715 - B4 SINE B4 -6 286 86 8 1972 585 231 8 0 chr1 181863336 181863457 -15331975 + B1_Mur2 SINE Alu 23 144 -5 8 1972 623 262 26 36 chr1 181863823 181864017 -15331415 - B3A SINE B2 -1 197 6 8 1972 637 240 57 6 chr1 181864205 181864381 -15331051 - MTD LTR MaLR 0 419 235 8 1972 788 170 19 19 chr1 181864384 181864540 -15330892 + B4 SINE B4 84 239 -53 8 1972 3015 109 14 7 chr1 181865054 181865498 -15329934 + Lx2 LINE L1 6551 6997 0 8 1972 24 0 0 0 chr1 181866153 181866177 -15329255 + AT_rich Low_complexity Low_complexity 1 24 0 8 1972 1634 158 21 153 chr1 181866532 181866964 -15328468 - ORR1B1 LTR MaLR 0 394 20 8 1972 23 0 0 0 chr1 181867417 181867440 -15327992 + AT_rich Low_complexity Low_complexity 1 23 0 8 1972 292 302 44 69 chr1 181867502 181867662 -15327770 - MER5A1 DNA MER1_type -7 159 4 8 1972 2316 126 16 0 chr1 181867832 181868205 -15327227 + ORR1B1 LTR MaLR 1 379 -15 8 1972 432 0 0 0 chr1 181868219 181868267 -15327165 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 1972 1371 96 0 21 chr1 181868326 181868518 -15326914 + B2_Mm2 SINE B2 1 188 -7 8 1972 915 217 10 20 chr1 181868894 181869096 -15326336 + ID_B1 SINE B4 2 201 -23 8 1972 264 204 18 18 chr1 181869276 181869331 -15326101 - ID4_ SINE ID -28 55 1 8 1972 217 368 0 0 chr1 181869414 181869490 -15325942 - ID4_ SINE ID -4 79 4 8 1972 317 292 28 9 chr1 181869510 181869617 -15325815 - PB1D9 SINE Alu -11 109 1 8 1972 413 266 28 0 chr1 181871311 181871420 -15324012 + PB1D10 SINE Alu 1 112 -5 8 1972 1246 120 16 0 chr1 181871429 181871612 -15323820 + B2_Mm2 SINE B2 4 189 -6 8 1972 1119 72 0 0 chr1 181871667 181871805 -15323627 + B1_Mus1 SINE Alu 2 139 -9 8 1972 192 40 0 0 chr1 181872082 181872107 -15323325 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1972 230 214 0 0 chr1 181872107 181872149 -15323283 - PB1 SINE Alu -10 117 76 8 1972 520 360 90 38 chr1 181872200 181872302 -15323130 + MER74A LTR ERVL 26 122 -436 8 1972 2896 42 90 0 chr1 181872302 181872679 -15322753 + IAPLTR2a LTR ERVK 1 411 0 8 1972 520 360 90 38 chr1 181872679 181873055 -15322377 + MER74A LTR ERVL 123 529 -29 8 1972 359 113 16 0 chr1 181873921 181873983 -15321449 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 8 1972 345 82 0 0 chr1 181874047 181874096 -15321336 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1972 279 0 0 0 chr1 181874143 181874174 -15321258 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1972 664 377 113 12 chr1 181874850 181875196 -15320236 + MLT1H LTR MaLR 81 461 -88 8 1972 523 231 16 32 chr1 181875747 181875872 -15319560 + PB1 SINE Alu 3 125 -2 8 1972 258 200 0 0 chr1 181875970 181876020 -15319412 - MT2A LTR ERVL -140 393 344 8 1972 440 346 19 68 chr1 181876015 181876384 -15319048 - MT2A LTR ERVL -98 435 85 8 1972 301 331 66 0 chr1 181876334 181876455 -15318977 - MTE2a LTR MaLR -244 135 7 8 1972 462 211 0 0 chr1 181877202 181877306 -15318126 + G-rich Low_complexity Low_complexity 2 105 0 8 1972 282 276 12 31 chr1 181877312 181877403 -15318029 + B1F SINE Alu 5 90 -60 8 1972 269 198 19 19 chr1 181877418 181877521 -15317911 + GA-rich Low_complexity Low_complexity 1 103 0 8 1972 247 246 0 0 chr1 181877659 181877716 -15317716 + L2b LINE L2 3313 3369 -6 8 1972 952 236 81 8 chr1 181878272 181878292 -15317140 - B4A SINE B4 -8 284 265 8 1972 330 26 0 0 chr1 181878292 181878331 -15317101 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1972 952 236 81 8 chr1 181878331 181878571 -15316861 - B4A SINE B4 -28 264 5 8 1972 423 270 0 0 chr1 181878594 181878694 -15316738 - PB1D10 SINE Alu -8 109 10 8 1972 241 358 0 12 chr1 181879343 181879425 -15316007 - ID4_ SINE ID 0 83 3 8 1972 621 282 5 16 chr1 181879453 181879637 -15315795 + B3A SINE B2 1 182 -16 8 1972 337 208 0 15 chr1 181879719 181879727 -15315705 + (CA)n Simple_repeat Simple_repeat 1 8 0 8 1972 207 0 0 0 chr1 181879727 181879750 -15315682 + (TC)n Simple_repeat Simple_repeat 1 23 0 8 1972 337 208 0 15 chr1 181879750 181879873 -15315559 + (CA)n Simple_repeat Simple_repeat 1 121 0 8 1972 585 212 0 0 chr1 181879929 181880108 -15315324 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1972 27 29 0 0 chr1 181880123 181880157 -15315275 + AT_rich Low_complexity Low_complexity 1 34 0 8 1972 552 284 34 139 chr1 181880754 181881134 -15314298 + ORR1E LTR MaLR 20 359 0 8 1972 644 254 70 17 chr1 181882415 181882587 -15312845 - B3A SINE B2 -16 182 2 8 1972 475 250 0 18 chr1 181882623 181882737 -15312695 - PB1D10 SINE Alu -3 114 3 8 1972 562 300 83 55 chr1 181882768 181883093 -15312339 - L1MA6 LINE L1 -17 6283 5950 8 1972 751 306 76 16 chr1 181883119 181883368 -15312064 - B4A SINE B4 -27 265 2 8 1972 307 245 135 81 chr1 181883368 181883473 -15311959 - B1F2 SINE Alu -37 112 2 8 1972 440 78 25 49 chr1 181883990 181884071 -15311361 - B2_Mm2 SINE B2 -116 79 1 8 1972 256 206 95 0 chr1 181884101 181884164 -15311268 - MLT1G LTR MaLR -517 74 6 8 1972 240 283 17 0 chr1 181884249 181884309 -15311123 + GA-rich Low_complexity Low_complexity 4 64 0 8 1972 432 0 0 0 chr1 181885143 181885191 -15310241 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1972 225 94 0 0 chr1 181885231 181885263 -15310169 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1972 343 295 35 35 chr1 181885272 181885416 -15310016 - B4A SINE B4 -30 262 119 8 1972 234 252 59 20 chr1 181885900 181886001 -15309431 - Lx9 LINE L1 -9 7635 7531 8 1972 387 0 0 0 chr1 181886009 181886052 -15309380 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1972 392 0 21 0 chr1 181886052 181886099 -15309333 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1972 857 275 118 56 chr1 181886131 181886563 -15308869 - Lx9 LINE L1 -227 7417 6959 8 1972 563 283 55 72 chr1 181886665 181886901 -15308531 - MER2 DNA MER2_type -10 335 104 8 1972 591 347 5 10 chr1 181887124 181887325 -15308107 - B4 SINE B4 -92 200 1 8 1972 529 331 7 7 chr1 181888285 181888437 -15306995 - RSINE1 SINE B4 -6 159 8 8 1972 21 0 0 0 chr1 181889963 181889984 -15305448 + GC_rich Low_complexity Low_complexity 1 21 0 8 1972 206 58 36 55 chr1 181890065 181890120 -15305312 + (CGGG)n Simple_repeat Simple_repeat 4 57 0 8 1972 41 66 0 0 chr1 181890329 181890405 -15305027 + GC_rich Low_complexity Low_complexity 1 76 0 8 1972 31 82 0 0 chr1 181890937 181891010 -15304422 + AT_rich Low_complexity Low_complexity 1 73 0 8 1972 409 329 89 13 chr1 181893135 181893292 -15302140 - ID_B1 SINE B4 0 224 56 8 1972 584 238 39 78 chr1 181893416 181893621 -15301811 - B3A SINE B2 -1 197 1 8 1972 244 98 78 0 chr1 181893647 181893698 -15301734 + CT-rich Low_complexity Low_complexity 4 58 0 8 1972 841 123 250 0 chr1 181893698 181893807 -15301625 - Lx9 LINE L1 0 7644 7517 8 1972 549 115 0 0 chr1 181893807 181893903 -15301529 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1972 841 123 250 0 chr1 181893903 181894021 -15301411 - Lx9 LINE L1 -128 7516 7362 8 1972 231 146 0 0 chr1 181895488 181895529 -15299903 + (TATG)n Simple_repeat Simple_repeat 2 42 0 8 1972 785 140 14 22 chr1 181895531 181895670 -15299762 - B1_Mur3 SINE Alu -10 139 2 8 1972 22 0 0 0 chr1 181895864 181895886 -15299546 + AT_rich Low_complexity Low_complexity 1 22 0 8 1972 28 0 0 0 chr1 181896715 181896743 -15298689 + AT_rich Low_complexity Low_complexity 1 28 0 8 1972 998 79 16 43 chr1 181896817 181897002 -15298430 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 1972 688 130 19 25 chr1 181897003 181897161 -15298271 + GA-rich Low_complexity Low_complexity 2 158 0 9 1972 320 111 0 18 chr1 181897158 181897213 -15298219 + (GGA)n Simple_repeat Simple_repeat 3 56 0 9 1972 195 42 0 0 chr1 181897368 181897392 -15298040 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 1972 259 330 43 9 chr1 181898340 181898456 -15296976 + MIRb SINE MIR 43 162 -106 9 1972 738 282 112 10 chr1 181898510 181898707 -15296725 - ID_B1 SINE B4 0 224 8 9 1972 464 209 93 0 chr1 181898901 181898987 -15296445 - B3 SINE B2 -16 200 107 9 1972 180 163 0 0 chr1 181899829 181899872 -15295560 + T-rich Low_complexity Low_complexity 1 43 0 9 1972 222 59 77 19 chr1 181900729 181900781 -15294651 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1972 418 152 247 11 chr1 181900781 181900874 -15294558 - B1_Mus2 SINE Alu -32 115 1 9 1972 290 291 81 0 chr1 181901004 181901090 -15294342 - PB1D10 SINE Alu -7 110 18 9 1972 225 309 89 69 chr1 181901023 181901124 -15294308 - ID_B1 SINE B4 -52 172 70 9 1972 235 289 111 7 chr1 181901206 181901359 -15294073 - L1MC4a LINE L1 -140 7902 7734 9 1972 353 283 221 29 chr1 181901517 181901757 -15293675 - L1MC4a LINE L1 -440 7602 7317 9 1972 279 330 59 8 chr1 181901762 181901881 -15293551 + B1F1 SINE Alu 5 129 -20 9 1972 354 123 0 0 chr1 181901882 181901939 -15293493 + (CAG)n Simple_repeat Simple_repeat 1 57 0 9 1972 261 0 0 0 chr1 181902069 181902098 -15293334 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1972 392 273 206 0 chr1 181902312 181902477 -15292955 - L1MC4a LINE L1 -1047 6995 6797 9 1972 402 317 62 50 chr1 181902652 181902836 -15292596 - L1MC4a LINE L1 -1247 6635 6476 9 1972 655 223 44 15 chr1 181902851 181903027 -15292405 - B3A SINE B2 -39 177 1 9 1972 245 348 27 0 chr1 181903570 181903682 -15291750 - PB1D10 SINE Alu -2 115 1 9 1972 198 0 0 0 chr1 181903985 181904007 -15291425 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 9 1972 235 351 44 0 chr1 181904326 181904440 -15290992 + HAL1 LINE L1 17 135 -2372 9 1972 307 220 31 52 chr1 181904870 181904966 -15290466 + HAL1 LINE L1 2124 2217 -290 9 1972 441 266 11 0 chr1 181905609 181905703 -15289729 + B4A SINE B4 2 96 -196 9 1972 213 65 0 0 chr1 181905779 181905810 -15289622 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1972 1398 202 108 49 chr1 181905819 181906189 -15289243 + MTD LTR MaLR 13 404 -15 9 1972 360 287 39 19 chr1 181906181 181906284 -15289148 + B4A SINE B4 117 221 -71 9 1972 416 72 14 0 chr1 181906287 181906356 -15289076 + Lx9 LINE L1 7574 7643 -1 9 1972 299 313 0 0 chr1 181906396 181906463 -15288969 + B4A SINE B4 223 289 -3 9 1972 861 215 75 5 chr1 181907118 181907305 -15288127 + MTD LTR MaLR 23 222 -197 9 1972 504 239 92 0 chr1 181907391 181907521 -15287911 - B3 SINE B2 -5 211 70 9 1972 629 298 95 30 chr1 181908672 181908935 -15286497 + Charlie2a DNA MER1_type 7 286 -2575 9 1972 964 136 7 0 chr1 181909387 181909534 -15285898 + B1_Mur2 SINE Alu 1 148 -1 9 1972 242 301 36 7 chr1 181909567 181909704 -15285728 - L1M5 LINE L1 -2589 3557 3417 9 1972 1947 200 73 13 chr1 181909722 181910173 -15285259 - RMER1C Other Other -28 1314 837 9 1972 232 299 33 22 chr1 181910462 181910643 -15284789 - L1M5 LINE L1 -3557 2589 2407 9 1972 3185 56 2 8 chr1 181910651 181911049 -15284383 + MTA_Mm LTR MaLR 1 396 0 9 1972 245 27 54 0 chr1 181911164 181911201 -15284231 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 9 1972 2866 152 47 60 chr1 181911282 181912050 -15283382 + RMER6C LTR ERVK 1 718 -38 9 1972 241 266 160 8 chr1 181913197 181913322 -15282110 - MLT1L LTR MaLR -6 604 461 9 1972 408 179 0 0 chr1 181913721 181913799 -15281633 + (TA)n Simple_repeat Simple_repeat 1 78 0 9 1972 31 0 0 0 chr1 181913799 181913830 -15281602 + AT_rich Low_complexity Low_complexity 1 31 0 9 1972 1184 68 0 0 chr1 181913830 181913978 -15281454 - B1_Mus1 SINE Alu 0 148 1 9 1972 1499 144 59 0 chr1 181913978 181914214 -15281218 - RMER19B LTR ERVK -16 886 637 9 1972 2467 159 99 108 chr1 181914582 181915155 -15280277 - RMER19B LTR ERVK -334 568 1 9 1972 270 288 30 0 chr1 181915179 181915245 -15280187 - ID4_ SINE ID -1 82 15 9 1972 371 336 0 0 chr1 181915336 181915443 -15279989 - PB1D10 SINE Alu -7 110 4 9 1972 1067 212 21 0 chr1 181915676 181915865 -15279567 - B3 SINE B2 -23 193 1 9 1972 21 0 0 0 chr1 181915865 181915886 -15279546 + AT_rich Low_complexity Low_complexity 1 21 0 9 1972 1077 167 45 15 chr1 181915886 181916087 -15279345 - B3 SINE B2 -2 214 8 9 1972 204 170 38 0 chr1 181916245 181916298 -15279134 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1972 205 155 50 33 chr1 181916273 181916358 -15279074 + (TCTG)n Simple_repeat Simple_repeat 1 86 0 9 1972 658 336 72 147 chr1 181916358 181916902 -15278530 - MLT2B3 LTR ERVL -51 503 1 9 1972 275 315 115 50 chr1 181917010 181917271 -15278161 - B4 SINE B4 -11 281 4 9 1972 441 162 0 14 chr1 181917478 181917547 -15277885 - B3 SINE B2 -116 100 33 9 1972 668 194 0 0 chr1 181917735 181917843 -15277589 + B3 SINE B2 4 111 -105 9 1972 35 83 0 0 chr1 181918439 181918523 -15276909 + AT_rich Low_complexity Low_complexity 1 84 0 9 1972 10335 71 40 29 chr1 181918535 181921171 -15274261 + Lx3_Mus LINE L1 4341 7009 0 9 1972 23 78 0 0 chr1 181921171 181921222 -15274210 + AT_rich Low_complexity Low_complexity 1 51 0 9 1972 704 37 46 9 chr1 181921347 181921456 -15273976 + L1Md_F3 LINE L1 6446 6558 -26 9 1972 297 0 0 0 chr1 181921456 181921489 -15273943 + (TAA)n Simple_repeat Simple_repeat 1 33 0 9 1972 212 0 36 0 chr1 181921753 181921781 -15273651 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1972 487 304 0 0 chr1 181921923 181922035 -15273397 - ID_B1 SINE B4 -12 212 101 9 1972 1886 257 85 24 chr1 181922049 181923112 -15272320 - L1MB4 LINE L1 -44 6136 5015 9 1972 290 259 0 0 chr1 181923356 181923410 -15272022 - B4A SINE B4 -20 272 219 9 1972 830 276 91 28 chr1 181923461 181923930 -15271502 - L1MB4 LINE L1 -1246 4900 4405 9 1972 486 262 0 144 chr1 181923930 181924104 -15271328 - B1_Mur1 SINE Alu 0 149 1 9 1972 830 276 91 28 chr1 181924104 181924171 -15271261 - L1MB4 LINE L1 -1742 4404 4330 9 1972 292 275 89 30 chr1 181924188 181924323 -15271109 - B1F1 SINE Alu -6 143 1 9 1972 282 268 43 31 chr1 181924337 181924499 -15270933 - L1MB8 LINE L1 0 6178 6015 9 1972 472 239 113 30 chr1 181924674 181924877 -15270555 - L1MB4 LINE L1 -1899 4241 4022 9 1972 322 267 34 8 chr1 181925084 181925201 -15270231 - L1MC2 LINE L1 -448 5896 5777 9 1972 24 0 0 0 chr1 181925515 181925539 -15269893 + AT_rich Low_complexity Low_complexity 1 24 0 9 1972 210 37 0 0 chr1 181925545 181925572 -15269860 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1972 234 62 0 0 chr1 181925572 181925604 -15269828 + (GA)n Simple_repeat Simple_repeat 2 33 0 9 1972 531 271 53 15 chr1 181925607 181925738 -15269694 - RSINE1 SINE B4 -29 136 1 9 1972 22 0 0 0 chr1 181926539 181926561 -15268871 + AT_rich Low_complexity Low_complexity 1 22 0 9 1972 662 226 83 11 chr1 181926566 181926750 -15268682 - B3A SINE B2 -30 186 1 9 1972 229 254 0 0 chr1 181927336 181927391 -15268041 - L1M5 LINE L1 -3652 2494 2440 9 1973 207 0 0 0 chr1 181928198 181928221 -15267211 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1973 291 54 0 0 chr1 181928802 181928839 -15266593 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1973 384 77 0 0 chr1 181928839 181928891 -15266541 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 9 1973 189 0 0 0 chr1 181928892 181928913 -15266519 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 9 1973 426 228 80 109 chr1 181928924 181929062 -15266370 + ID_B1 SINE B4 91 224 0 9 1973 746 140 62 56 chr1 181929213 181929357 -15266075 + B1_Mm SINE Alu 2 146 -1 9 1973 209 125 0 24 chr1 181929358 181929399 -15266033 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 9 1973 192 152 0 0 chr1 181929919 181929952 -15265480 + (CG)n Simple_repeat Simple_repeat 2 34 0 9 1973 375 23 0 0 chr1 181929952 181929996 -15265436 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1973 400 309 97 4 chr1 181930031 181930268 -15265164 - L1M5 LINE L1 -1539 4607 4349 9 1973 2307 117 79 19 chr1 181930278 181930745 -15264687 - Lx3B LINE L1 -486 6487 5933 9 1973 924 129 14 0 chr1 181930859 181930999 -15264433 - B1_Mus1 SINE Alu -6 142 1 9 1973 455 352 82 51 chr1 181931345 181931773 -15263659 - L1M5 LINE L1 -2956 3190 2750 9 1973 388 344 85 66 chr1 181931751 181932069 -15263363 - L1M5 LINE L1 -3501 2645 2322 9 1973 368 223 112 65 chr1 181932246 181932528 -15262904 - RLTR15 LTR ERVK -16 343 3 9 1973 374 302 121 14 chr1 181932658 181932799 -15262633 - RSINE1 SINE B4 -8 157 2 9 1973 300 344 22 9 chr1 181932830 181933056 -15262376 - L1M5 LINE L1 -372 5801 5573 9 1973 211 324 17 100 chr1 181933523 181933643 -15261789 - B3 SINE B2 -105 111 2 9 1973 484 235 142 16 chr1 181933643 181933833 -15261599 - L1M5 LINE L1 -1635 4511 4298 9 1973 279 232 19 0 chr1 181934153 181934235 -15261197 - L1M2 LINE L1 -1175 4968 4887 9 1973 1002 153 130 10 chr1 181934309 181934501 -15260931 + MTC LTR MaLR 1 215 -206 9 1973 2174 145 73 114 chr1 181934596 181935133 -15260299 - RMER19B LTR ERVK -387 515 1 9 1973 303 226 198 9 chr1 181935148 181935264 -15260168 - RMER21B LTR ERV1 -348 494 357 9 1973 952 209 15 39 chr1 181935296 181935500 -15259932 + MTC LTR MaLR 223 421 0 9 1973 310 207 43 65 chr1 181935580 181935673 -15259759 - L1MC LINE L1 -957 5189 5099 9 1973 978 329 157 49 chr1 181935678 181936310 -15259122 - L1M5 LINE L1 -2296 3850 3150 9 1973 461 310 30 76 chr1 181936310 181936614 -15258818 - B4A SINE B4 -2 290 1 9 1973 978 329 157 49 chr1 181936614 181937166 -15258266 - L1M5 LINE L1 -2997 3149 2538 9 1973 230 261 92 0 chr1 181937514 181937579 -15257853 - ID4_ SINE ID -11 72 2 9 1973 384 359 0 0 chr1 181937815 181937918 -15257514 + PB1 SINE Alu 1 103 -24 9 1973 1854 260 29 8 chr1 181938326 181938824 -15256608 + Lx6 LINE L1 6565 7430 -30 9 1973 4162 164 26 22 chr1 181939014 181939788 -15255644 - Lx3C LINE L1 -4 6972 6196 9 1973 766 126 0 9 chr1 181939810 181939922 -15255510 - B2_Mm2 SINE B2 -74 121 11 9 1973 1016 49 0 7 chr1 181939922 181940065 -15255367 + L1Md_F2 LINE L1 6441 6582 0 9 1973 1234 35 0 0 chr1 181940089 181940234 -15255198 + B1_Mus1 SINE Alu 1 145 -3 9 1973 213 65 0 0 chr1 181940234 181940265 -15255167 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1973 351 0 0 0 chr1 181940677 181940716 -15254716 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1973 243 146 0 0 chr1 181940716 181940757 -15254675 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1973 23 33 0 0 chr1 181940773 181940803 -15254629 + AT_rich Low_complexity Low_complexity 1 30 0 1 1973 4379 10 2 12 chr1 181940812 181941310 -15254122 - MT2_Mm LTR ERVL 0 493 1 1 1973 302 0 0 0 chr1 181941310 181941348 -15254084 - MERVL-int LTR ERVL 0 5485 5448 1 1973 406 155 46 35 chr1 181941348 181941435 -15253997 - ORR1A3-int LTR MaLR -1323 640 553 1 1973 7660 28 1 0 chr1 181941435 181942364 -15253068 - MERVL-int LTR ERVL -125 5360 4431 1 1973 3828 18 0 0 chr1 181942350 181942807 -15252625 - MERVL-int LTR ERVL -5028 457 1 1 1973 4379 10 2 12 chr1 181942807 181943305 -15252127 - MT2_Mm LTR ERVL 0 493 1 1 1973 2363 198 79 37 chr1 181943305 181943898 -15251534 - Lx7 LINE L1 -11 7685 7068 1 1973 3205 154 60 7 chr1 181943890 181944439 -15250993 - Lx7 LINE L1 -777 6919 6342 1 1973 2599 137 32 43 chr1 181944439 181944905 -15250527 + RMER6B LTR ERVK 1 461 0 1 1973 5883 218 57 67 chr1 181944912 181947140 -15248292 - Lx7 LINE L1 -1363 6333 4133 1 1973 2565 133 81 32 chr1 181947143 181947653 -15247779 + L1_Mur3 LINE L1 1002 1552 -4328 1 1973 3162 73 33 9 chr1 181947653 181948083 -15247349 + L1Md_F2 LINE L1 6131 6570 -12 1 1973 2565 131 40 38 chr1 181948083 181948252 -15247180 + L1_Mur3 LINE L1 1553 1710 -4170 1 1973 350 42 0 20 chr1 181948360 181948409 -15247023 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1973 450 280 261 0 chr1 181948420 181948638 -15246794 - B4A SINE B4 -4 288 14 1 1973 327 246 0 0 chr1 181948638 181948699 -15246733 - ID4 SINE ID -13 70 10 1 1973 254 295 126 0 chr1 181949723 181949818 -15245614 + PB1D7 SINE Alu 1 107 -13 1 1973 1226 254 112 73 chr1 181950215 181950882 -15244550 + L1MA5 LINE L1 5436 6128 -172 1 1973 207 0 0 0 chr1 181951049 181951072 -15244360 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1973 180 125 0 0 chr1 181951074 181951106 -15244326 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 1 1973 378 0 0 0 chr1 181951148 181951190 -15244242 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1973 257 238 23 23 chr1 181951219 181951305 -15244127 - Lx7 LINE L1 -6720 1008 923 1 1973 4276 159 33 19 chr1 181952468 181953277 -15242155 - Lx2B LINE L1 0 7000 6180 1 1973 188 0 74 0 chr1 181953513 181953540 -15241892 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1973 257 345 25 41 chr1 181955125 181955246 -15240186 - MamRep1894 DNA hAT -4 119 1 1 1973 280 203 57 14 chr1 181955349 181955419 -15240013 - ID4_ SINE ID -10 73 1 1 1973 261 215 11 92 chr1 181955473 181955560 -15239872 - B1_Mur3 SINE Alu -2 147 68 1 1973 609 259 0 52 chr1 181955562 181955717 -15239715 - B1_Mur2 SINE Alu -1 148 2 1 1973 272 304 180 65 chr1 181956148 181956712 -15238720 - L2a LINE L2 0 3426 2738 1 1973 185 65 0 31 chr1 181957054 181957086 -15238346 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1973 297 309 0 0 chr1 181957086 181957154 -15238278 - ID2 SINE ID -14 69 2 1 1973 357 365 40 53 chr1 181958124 181958350 -15237082 - MIRb SINE MIR -8 260 38 1 1973 308 325 85 71 chr1 181958464 181958676 -15236756 - MER46C DNA MER2_type -44 294 80 1 1973 839 41 0 0 chr1 181958803 181958900 -15236532 - L1_Mus1 LINE L1 -301 6266 6170 1 1973 2393 47 13 0 chr1 181958900 181959198 -15236234 + L1_Mus1 LINE L1 6263 6564 -3 1 1973 359 301 38 109 chr1 181959346 181959529 -15235903 - B4A SINE B4 -120 172 3 1 1973 1003 252 147 93 chr1 181959871 181960526 -15234906 + RMER6C LTR ERVK 1 690 0 1 1973 200 88 29 29 chr1 181960930 181960965 -15234467 - MIR3 SINE MIR -25 183 149 1 1973 380 276 36 54 chr1 181962007 181962118 -15233314 + RSINE1 SINE B4 57 165 0 1 1973 1879 86 50 0 chr1 181962255 181962533 -15232899 - L1_Mus2 LINE L1 -449 6117 5826 1 1973 3189 77 19 52 chr1 181962533 181963012 -15232420 + L1_Mus2 LINE L1 6093 6555 -11 1 1973 333 0 0 0 chr1 181963012 181963049 -15232383 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1973 335 333 8 8 chr1 181963648 181963772 -15231660 - Charlie21a DNA MER1_type -546 667 544 1 1973 189 0 0 0 chr1 181963798 181963819 -15231613 + (ATG)n Simple_repeat Simple_repeat 1 21 0 1 1973 520 317 14 21 chr1 181963861 181964006 -15231426 - RSINE1 SINE B4 -17 148 5 1 1973 240 229 96 83 chr1 181964019 181964165 -15231267 - Charlie21a DNA MER1_type -686 527 380 1 1973 1321 72 33 0 chr1 181964165 181964346 -15231086 - B2_Mm2 SINE B2 -7 188 2 1 1973 1120 235 154 14 chr1 181964361 181964711 -15230721 - Lx6 LINE L1 -26 7434 7036 1 1973 4119 61 0 4 chr1 181965029 181965553 -15229879 - L1Md_F2 LINE L1 -12 6570 6049 1 1973 271 247 108 24 chr1 181965630 181965713 -15229719 - MER20 DNA MER1_type -45 174 85 1 1973 286 213 25 51 chr1 181965941 181966020 -15229412 + L1MC5 LINE L1 7835 7911 -50 1 1973 21 36 0 0 chr1 181966025 181966053 -15229379 + AT_rich Low_complexity Low_complexity 1 28 0 1 1973 606 232 181 0 chr1 181967774 181967929 -15227503 - RMER15 LTR ERVL -19 556 374 1 1973 21 36 0 0 chr1 181968135 181968163 -15227269 + AT_rich Low_complexity Low_complexity 1 28 0 1 1973 428 230 23 0 chr1 181968177 181968264 -15227168 - B3 SINE B2 -127 89 1 1 1973 730 258 22 17 chr1 181968704 181968885 -15226547 + B3A SINE B2 1 182 -16 1 1973 314 45 0 22 chr1 181969049 181969094 -15226338 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1973 962 169 6 6 chr1 181969094 181969267 -15226165 - Lx4A LINE L1 -5 7053 6881 1 1973 979 191 11 6 chr1 181969437 181969611 -15225821 + B3A SINE B2 2 176 -22 1 1973 500 280 106 25 chr1 181970539 181970700 -15224732 + B4A SINE B4 56 229 -63 1 1973 513 0 0 0 chr1 181971066 181971123 -15224309 + (TTCTC)n Simple_repeat Simple_repeat 1 57 0 1 1973 219 288 29 57 chr1 181971131 181971201 -15224231 - ID4 SINE ID -11 72 5 1 1973 24 53 0 0 chr1 181971419 181971457 -15223975 + AT_rich Low_complexity Low_complexity 1 38 0 1 1973 21 57 0 0 chr1 181971487 181971522 -15223910 + AT_rich Low_complexity Low_complexity 1 35 0 1 1973 560 288 92 12 chr1 181971769 181972083 -15223349 - L1MB8 LINE L1 -2 6177 5833 1 1973 501 253 108 50 chr1 181972912 181973024 -15222408 + L1MEf LINE L1 582 705 -5495 1 1973 180 77 0 0 chr1 181973024 181973050 -15222382 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1973 501 253 108 50 chr1 181973050 181973216 -15222216 + L1MEf LINE L1 706 876 -5324 1 1973 1123 182 10 0 chr1 181973254 181973452 -15221980 - B3 SINE B2 -11 205 6 1 1973 358 303 155 25 chr1 181973668 181974158 -15221274 + L1MEf LINE L1 1244 1797 -4403 1 1973 2525 150 61 27 chr1 181974419 181974929 -15220503 + RMER19B LTR ERVK 1 455 -447 1 1973 588 274 6 19 chr1 181975478 181975634 -15219798 + B3A SINE B2 41 194 -4 1 1973 379 211 133 9 chr1 181975676 181975781 -15219651 + RSINE1 SINE B4 13 130 -35 1 1973 29 60 0 0 chr1 181976197 181976247 -15219185 + AT_rich Low_complexity Low_complexity 1 50 0 1 1973 4055 101 26 5 chr1 181976886 181977471 -15217961 + L1VL4 LINE L1 193 789 -5513 1 1973 25180 151 25 22 chr1 181977464 181979072 -15216360 + Lx LINE L1 1203 2818 -3068 1 1973 4731 64 9 24 chr1 181979072 181979709 -15215723 + L1Md_F2 LINE L1 5955 6582 0 1 1973 25180 147 29 22 chr1 181979709 181983517 -15211915 + Lx LINE L1 2819 6648 -6 1 1973 258 230 52 26 chr1 181983616 181983732 -15211700 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 1 1973 203 0 37 0 chr1 181984064 181984091 -15211341 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1973 1103 38 0 0 chr1 181984091 181984224 -15211208 - B1_Mus2 SINE Alu -13 134 2 1 1973 5480 126 42 3 chr1 181984625 181985367 -15210065 + RMER12 LTR ERVK 1 772 -550 1 1973 191 62 62 0 chr1 181985367 181985399 -15210033 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1 1973 5480 126 42 3 chr1 181985399 181985539 -15209893 + RMER12 LTR ERVK 773 917 -405 1 1973 183 80 0 0 chr1 181985599 181985624 -15209808 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1973 3511 76 20 36 chr1 181985768 181986274 -15209158 - L1Md_F2 LINE L1 0 6582 6085 1 1973 4390 59 0 0 chr1 181986275 181986837 -15208595 + L1_Mm LINE L1 3537 4098 -1785 1 1973 525 198 82 80 chr1 181986837 181987015 -15208417 + RMER12 LTR ERVK 1081 1304 -18 1 1973 655 58 0 0 chr1 181987446 181987532 -15207900 - B1_Mur4 SINE Alu 0 150 65 1 1973 236 158 0 0 chr1 181987502 181987540 -15207892 - PB1D7 SINE Alu -27 93 56 1 1973 336 291 87 39 chr1 181988346 181988553 -15206879 + L1M5 LINE L1 2999 3215 -2931 1 1973 310 280 216 0 chr1 181988614 181988739 -15206693 + MIR SINE MIR 13 164 -98 1 1973 393 323 38 0 chr1 181988800 181988933 -15206499 + B1F SINE Alu 1 138 -11 1 1973 812 73 41 21 chr1 181989539 181989682 -15205750 - L1_Mus3 LINE L1 -680 5902 5761 1 1973 3058 67 12 0 chr1 181989682 181990098 -15205334 - BGLII LTR ERVK 0 421 1 1 1973 3130 206 45 53 chr1 181990103 181991058 -15204374 - RMER3D-int LTR ERVK -5 2837 1891 1 1973 754 153 36 48 chr1 181991026 181991191 -15204241 - RMER3D-int LTR ERVK -1148 1694 1532 1 1973 1861 165 8 34 chr1 181991223 181991611 -15203821 - RMER3D-int LTR ERVK -1309 1533 1156 1 1973 229 236 164 0 chr1 181991621 181991676 -15203756 - B2_Mm2 SINE B2 -131 64 1 1 1973 324 0 0 0 chr1 181991684 181991720 -15203712 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1973 548 156 11 11 chr1 181991735 181991826 -15203606 - B1_Mus2 SINE Alu -9 138 48 1 1973 240 238 139 23 chr1 181991769 181991855 -15203577 - RLTR25B LTR ERVK -519 509 414 1 1973 1058 102 0 13 chr1 181992419 181992568 -15202864 - B1_Mus2 SINE Alu 0 147 1 1 1973 21 0 0 0 chr1 181993271 181993292 -15202140 + AT_rich Low_complexity Low_complexity 1 21 0 1 1973 280 315 113 14 chr1 181993799 181994021 -15201411 + L1M3 LINE L1 5363 5606 -574 1 1973 510 220 103 29 chr1 181994141 181994277 -15201155 - B1_Mur3 SINE Alu -1 148 3 1 1973 315 71 0 0 chr1 181994604 181994646 -15200786 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1973 292 337 61 0 chr1 181994685 181994783 -15200649 + ID_B1 SINE B4 73 176 -48 1 1973 412 219 12 0 chr1 181994711 181994793 -15200639 + PB1D10 SINE Alu 23 105 -12 1 1973 33 0 0 0 chr1 181995051 181995084 -15200348 + AT_rich Low_complexity Low_complexity 1 33 0 1 1973 29 60 0 0 chr1 181995302 181995352 -15200080 + AT_rich Low_complexity Low_complexity 1 50 0 1 1973 484 300 7 32 chr1 181995680 181995835 -15199597 + RSINE1 SINE B4 12 162 -3 1 1973 180 0 0 0 chr1 181995867 181995887 -15199545 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 1 1973 384 319 29 7 chr1 181996581 181996720 -15198712 + MIR SINE MIR 121 262 0 1 1973 1323 94 124 0 chr1 181996837 181997038 -15198394 - URR1A DNA MER1_type 0 226 1 1 1973 1397 74 16 16 chr1 181997815 181998007 -15197425 + B2_Mm2 SINE B2 1 192 -3 1 1973 30 0 0 0 chr1 181998341 181998371 -15197061 + AT_rich Low_complexity Low_complexity 1 30 0 1 1973 292 194 54 27 chr1 181998435 181998546 -15196886 + Lx9 LINE L1 7529 7642 -2 1 1973 365 310 0 20 chr1 181998747 181998849 -15196583 + PB1D10 SINE Alu 9 108 -9 1 1973 257 278 182 20 chr1 181999083 181999182 -15196250 + PB1D10 SINE Alu 3 117 0 1 1973 1306 51 90 15 chr1 181999539 181999739 -15195693 - L1_Mus3 LINE L1 0 6638 6424 1 1973 32 26 0 0 chr1 182001277 182001316 -15194116 + AT_rich Low_complexity Low_complexity 1 39 0 1 1973 267 79 0 0 chr1 182001319 182001357 -15194075 + (CTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1973 2860 91 14 0 chr1 182001366 182001782 -15193650 - BGLII_Mus LTR ERVK 0 422 1 3 1973 207 100 0 0 chr1 182001785 182001815 -15193617 + (TTTCC)n Simple_repeat Simple_repeat 3 32 0 4 1973 521 261 19 7 chr1 182001923 182002077 -15193355 - Lx9 LINE L1 -186 7458 7303 5 1973 293 261 0 0 chr1 182003449 182003514 -15191918 - L1MEg2 LINE L1 -5614 838 774 6 1973 180 213 170 0 chr1 182003662 182003709 -15191723 - L2 LINE L2 -1840 1579 1525 7 1973 416 353 7 7 chr1 182003801 182003955 -15191477 + RSINE1 SINE B4 2 155 -10 8 1973 25 51 0 0 chr1 182004139 182004178 -15191254 + AT_rich Low_complexity Low_complexity 1 39 0 9 1973 2614 103 91 5 chr1 182004223 182004661 -15190771 + L1_Mur2 LINE L1 2929 3404 -2473 1 1973 627 262 176 17 chr1 182005187 182005595 -15189837 - L1MD LINE L1 -3124 3022 2550 1 1973 687 189 15 0 chr1 182005587 182005719 -15189713 - Lx9 LINE L1 -815 6829 6696 5 1973 303 219 14 123 chr1 182005861 182006029 -15189403 - B1_Mus2 SINE Alu -2 145 6 1 1973 468 0 0 0 chr1 182006037 182006089 -15189343 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1973 2337 100 22 0 chr1 182006844 182007164 -15188268 - ORR1A2 LTR MaLR 0 327 1 1 1973 309 326 125 50 chr1 182007592 182007895 -15187537 - L1MDa LINE L1 -6305 328 3 1 1973 284 296 19 135 chr1 182008299 182008455 -15186977 + L2a LINE L2 3285 3422 -4 1 1973 664 166 23 23 chr1 182008866 182009039 -15186393 + CT-rich Low_complexity Low_complexity 4 176 0 1 1973 857 291 82 16 chr1 182009054 182009609 -15185823 - L1MB3 LINE L1 0 6183 5558 1 1973 27 49 0 0 chr1 182009635 182009676 -15185756 + AT_rich Low_complexity Low_complexity 1 41 0 1 1973 262 221 0 40 chr1 182010273 182010372 -15185060 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 1973 2006 162 6 0 chr1 182011223 182011550 -15183882 - ORR1A4 LTR MaLR 0 329 1 2 1973 7220 126 30 2 chr1 182011550 182012707 -15182725 - ORR1A4-int LTR MaLR 0 1963 774 2 1973 324 270 0 139 chr1 182012679 182012701 -15182731 - MT2B LTR ERVL -337 264 225 2 1973 337 239 84 0 chr1 182012701 182012772 -15182660 - B1_Mur3 SINE Alu -54 95 19 2 1973 324 270 0 139 chr1 182012772 182012808 -15182624 - MT2B LTR ERVL -337 224 154 2 1973 346 68 0 0 chr1 182012811 182012855 -15182577 - MT2B LTR ERVL -342 259 216 2 1973 1310 218 79 22 chr1 182012860 182013216 -15182216 - RLTR31_Mm LTR ERVK -9 552 177 2 1973 363 96 0 0 chr1 182013330 182013382 -15182050 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1973 412 245 57 0 chr1 182013398 182013504 -15181928 - B1F SINE Alu -36 113 2 2 1973 277 330 34 8 chr1 182013504 182013517 -15181915 - ID_B1 SINE B4 -33 191 70 2 1973 874 111 7 0 chr1 182013971 182014106 -15181326 + URR1B DNA MER1_type 89 224 -1 2 1973 693 237 24 82 chr1 182014804 182015011 -15180421 - B3A SINE B2 -3 195 1 3 1973 1390 75 16 11 chr1 182015173 182015361 -15180071 + B2_Mm2 SINE B2 2 190 -5 3 1973 431 281 39 25 chr1 182016374 182016578 -15178854 - L1M2 LINE L1 -789 5523 5317 3 1973 1433 80 16 0 chr1 182017103 182017290 -15178142 - B2_Mm2 SINE B2 -4 191 2 3 1973 380 211 13 96 chr1 182017520 182017536 -15177896 - RMER17C LTR ERVK -120 290 275 3 1973 216 0 0 0 chr1 182017536 182017560 -15177872 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1973 380 211 13 96 chr1 182017560 182017773 -15177659 - RMER17C LTR ERVK -136 274 80 3 1973 245 355 83 94 chr1 182018418 182018500 -15176932 + LTR68 LTR ERV1 33 113 -627 3 1973 2430 132 16 3 chr1 182018500 182018887 -15176545 - ORR1B1 LTR MaLR 0 394 3 3 1973 245 355 83 94 chr1 182018887 182019177 -15176255 + LTR68 LTR ERV1 114 401 -339 3 1973 30 69 0 0 chr1 182019365 182019423 -15176009 + AT_rich Low_complexity Low_complexity 1 58 0 3 1973 424 272 57 29 chr1 182019426 182019566 -15175866 + ID_B1 SINE B4 17 160 -64 3 1973 413 272 90 69 chr1 182019788 182019919 -15175513 - L1MEe LINE L1 -1932 4214 4081 4 1973 894 181 5 31 chr1 182019919 182020113 -15175319 - B2_Mm2 SINE B2 -5 190 2 4 1973 413 272 90 69 chr1 182020113 182020313 -15175119 - L1MEe LINE L1 -2066 4080 3876 4 1973 284 143 48 0 chr1 182020491 182020554 -15174878 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 4 1973 326 331 67 28 chr1 182020623 182020803 -15174629 - MIR SINE MIR -51 211 25 4 1973 263 234 157 13 chr1 182021401 182021495 -15173937 - B1F SINE Alu -11 138 18 4 1973 266 0 29 0 chr1 182021829 182021863 -15173569 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1973 279 275 22 0 chr1 182021919 182022010 -15173422 - L1MB2 LINE L1 -6 6165 6073 4 1973 233 257 29 0 chr1 182022306 182022376 -15173056 - L1MEe LINE L1 -4492 1674 1603 4 1973 362 330 40 10 chr1 182022605 182022706 -15172726 - RSINE1 SINE B4 -6 159 56 4 1973 684 214 95 67 chr1 182022758 182022968 -15172464 - B3 SINE B2 0 216 1 4 1973 761 235 58 19 chr1 182023666 182023874 -15171558 + B3 SINE B2 1 216 0 4 1973 788 281 141 67 chr1 182024892 182025190 -15170242 - MTEa LTR MaLR -1 378 59 5 1973 481 289 83 13 chr1 182025197 182025572 -15169860 + L1M3 LINE L1 2715 3127 -3019 5 1973 387 293 64 0 chr1 182025579 182025719 -15169713 + ID_B1 SINE B4 76 224 0 5 1973 279 309 152 59 chr1 182025733 182026108 -15169324 + L1M3 LINE L1 3159 3568 -2572 5 1973 425 168 97 61 chr1 182026281 182026395 -15169037 - MLT1B LTR MaLR -251 139 22 5 1973 567 243 50 75 chr1 182027276 182027476 -15167956 + B3A SINE B2 1 195 -3 5 1973 2470 130 52 2 chr1 182027730 182028131 -15167301 - MTC LTR MaLR 0 421 1 5 1973 1872 272 131 15 chr1 182028410 182029177 -15166255 - Lx8 LINE L1 -4 7469 6600 5 1973 396 217 139 70 chr1 182029225 182029240 -15166192 + B1F1 SINE Alu 2 16 -133 5 1973 1434 194 197 3 chr1 182029240 182029591 -15165841 + MTD LTR MaLR 1 419 0 5 1973 396 217 139 70 chr1 182029591 182029704 -15165728 + B1F1 SINE Alu 17 139 -10 5 1973 880 244 77 0 chr1 182029942 182030151 -15165281 + MTD LTR MaLR 1 225 -194 5 1973 538 272 64 71 chr1 182030192 182030625 -15164807 - RLTR12B LTR ERVK -28 499 103 6 1973 697 250 162 0 chr1 182030684 182030888 -15164544 + MTD LTR MaLR 183 419 0 5 1973 3556 63 2 77 chr1 182032512 182033042 -15162390 + L1_Mus2 LINE L1 6077 6566 0 6 1973 413 298 143 0 chr1 182033179 182033347 -15162085 - L2 LINE L2 -1119 2300 2109 6 1973 365 288 78 22 chr1 182035766 182035997 -15159435 + L1MC4 LINE L1 7794 8037 -5 6 1973 480 273 107 0 chr1 182036483 182036604 -15158828 - ID_B1 SINE B4 -4 220 87 6 1973 544 279 14 7 chr1 182036843 182036984 -15158448 - MLT2B4 LTR ERVL -404 152 11 6 1973 404 282 73 71 chr1 182037228 182037720 -15157712 + L1MEg LINE L1 591 1083 -5001 6 1973 387 0 0 0 chr1 182037721 182037764 -15157668 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1973 306 291 89 65 chr1 182037796 182037965 -15157467 + L1MEg LINE L1 1187 1359 -4725 6 1973 576 256 59 108 chr1 182038149 182038456 -15156976 - B4A SINE B4 0 292 1 6 1973 549 258 25 0 chr1 182038745 182038865 -15156567 - B3 SINE B2 0 216 94 6 1973 414 238 2 27 chr1 182038848 182038946 -15156486 + B3 SINE B2 24 119 -74 7 1973 21 0 0 0 chr1 182040898 182040919 -15154513 + AT_rich Low_complexity Low_complexity 1 21 0 7 1973 252 329 25 0 chr1 182042142 182042221 -15153211 + ID4 SINE ID 3 83 0 7 1973 721 274 28 122 chr1 182042231 182042551 -15152881 + B4A SINE B4 2 291 -1 7 1973 429 325 63 11 chr1 182043107 182043297 -15152135 + B3 SINE B2 2 201 -15 7 1973 284 237 58 27 chr1 182044666 182044761 -15150671 - PB1D10 SINE Alu -8 109 15 7 1973 1288 77 50 0 chr1 182045336 182045517 -15149915 - B2_Mm2 SINE B2 -4 191 2 7 1973 270 310 0 14 chr1 182045880 182045952 -15149480 + L2a LINE L2 3319 3389 -37 7 1973 534 113 0 0 chr1 182045967 182046064 -15149368 + (GA)n Simple_repeat Simple_repeat 1 97 0 7 1973 595 259 52 7 chr1 182046078 182046214 -15149218 - RSINE1 SINE B4 -17 148 7 7 1973 192 167 0 0 chr1 182046216 182046252 -15149180 + MIRm SINE MIR 239 274 -2 8 1973 738 295 51 87 chr1 182046321 182046596 -15148836 + B4A SINE B4 8 272 -20 8 1973 727 215 27 111 chr1 182046703 182046928 -15148504 + B3 SINE B2 1 206 -10 8 1973 22 0 0 0 chr1 182047306 182047328 -15148104 + AT_rich Low_complexity Low_complexity 1 22 0 8 1973 1236 136 61 0 chr1 182047340 182047553 -15147879 - URR1A DNA MER1_type 0 226 1 8 1973 21 0 0 0 chr1 182049669 182049690 -15145742 + AT_rich Low_complexity Low_complexity 1 21 0 8 1973 21 0 0 0 chr1 182049746 182049767 -15145665 + AT_rich Low_complexity Low_complexity 1 21 0 8 1973 3262 74 9 0 chr1 182050296 182050728 -15144704 + L1_Mus3 LINE L1 6202 6637 -1 8 1973 213 39 0 0 chr1 182050808 182050834 -15144598 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1973 188 325 62 16 chr1 182050896 182051024 -15144408 + MIR SINE MIR 61 194 -68 8 1973 369 0 0 0 chr1 182053679 182053720 -15141712 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1973 189 0 0 0 chr1 182054228 182054249 -15141183 + (TCTCC)n Simple_repeat Simple_repeat 4 24 0 9 1973 26 0 0 0 chr1 182054553 182054579 -15140853 + AT_rich Low_complexity Low_complexity 1 26 0 9 1973 315 71 0 0 chr1 182055446 182055488 -15139944 + (T)n Simple_repeat Simple_repeat 1 42 0 9 1973 1087 49 14 0 chr1 182055488 182055632 -15139800 - B1_Mus2 SINE Alu 0 147 2 9 1973 551 204 38 96 chr1 182055491 182055648 -15139784 - B4 SINE B4 -69 223 76 9 1973 1140 57 0 0 chr1 182056835 182056975 -15138457 + B1_Mus1 SINE Alu 2 141 -7 9 1973 195 42 0 0 chr1 182058782 182058806 -15136626 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1974 677 239 140 65 chr1 182059654 182059956 -15135476 - MTE2a LTR MaLR -32 387 54 9 1974 362 288 120 35 chr1 182062045 182062505 -15132927 - L1M5 LINE L1 -646 5594 5102 9 1974 385 303 171 52 chr1 182062692 182062978 -15132454 - L1M5 LINE L1 -1315 4831 4512 9 1974 291 252 38 162 chr1 182063858 182064043 -15131389 + RSINE1 SINE B4 4 165 0 1 1974 454 237 58 134 chr1 182065373 182065538 -15129894 + B3A SINE B2 40 195 -3 1 1974 3044 59 8 0 chr1 182065660 182066049 -15129383 - L1Md_F2 LINE L1 0 6582 6191 1 1974 658 288 55 22 chr1 182067109 182067382 -15128050 + B4A SINE B4 2 283 -9 1 1974 203 176 0 0 chr1 182067387 182067421 -15128011 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1 1974 29 0 0 0 chr1 182067638 182067667 -15127765 + AT_rich Low_complexity Low_complexity 1 29 0 1 1974 853 292 39 0 chr1 182070042 182070323 -15125109 - B4A SINE B4 0 292 1 1 1974 189 318 15 0 chr1 182071113 182071179 -15124253 + MIR SINE MIR 146 212 -50 1 1974 23 0 0 0 chr1 182072571 182072594 -15122838 + AT_rich Low_complexity Low_complexity 1 23 0 1 1974 819 179 28 0 chr1 182072617 182072762 -15122670 - B1_Mur3 SINE Alu 0 149 1 1 1974 531 266 125 60 chr1 182073099 182073299 -15122133 + B4 SINE B4 3 215 -77 1 1974 521 297 25 25 chr1 182073309 182073471 -15121961 + RSINE1 SINE B4 2 163 -2 1 1974 184 0 0 88 chr1 182073488 182073522 -15121910 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1974 966 227 18 68 chr1 182073638 182073680 -15121752 + B3 SINE B2 1 32 -184 1 1974 2650 48 9 6 chr1 182073680 182074013 -15121419 + L1Md_F2 LINE L1 6248 6581 -1 1 1974 966 227 18 68 chr1 182074013 182074192 -15121240 + B3 SINE B2 33 211 -5 1 1974 205 307 12 62 chr1 182074295 182074375 -15121057 + L4 LINE RTE 1766 1841 -188 1 1974 1865 112 68 0 chr1 182075563 182075857 -15119575 - ORR1A2 LTR MaLR -9 318 5 1 1974 1152 219 13 4 chr1 182077336 182077561 -15117871 - RLTR18B LTR ERVK -1 511 285 1 1974 272 244 0 13 chr1 182077629 182077708 -15117724 - L1M5 LINE L1 -302 5892 5815 1 1974 1932 132 45 83 chr1 182078045 182078426 -15117006 - ORR1B1 LTR MaLR 0 394 2 1 1974 379 282 138 47 chr1 182078431 182078762 -15116670 - L1M5 LINE L1 -799 5347 4991 1 1974 24 77 0 0 chr1 182079230 182079282 -15116150 + AT_rich Low_complexity Low_complexity 1 52 0 1 1974 226 157 57 38 chr1 182079866 182079919 -15115513 + B3 SINE B2 1 54 -162 1 1974 269 243 71 0 chr1 182080506 182080576 -15114856 + ID4_ SINE ID 3 77 -6 1 1974 626 205 8 41 chr1 182080749 182080871 -15114561 + PB1D7 SINE Alu 1 118 -2 1 1974 643 214 55 35 chr1 182083280 182083425 -15112007 - B1_Mur1 SINE Alu 0 149 2 1 1974 493 243 64 35 chr1 182083466 182083607 -15111825 - B1F1 SINE Alu 0 149 5 1 1974 684 36 0 0 chr1 182084980 182085063 -15110369 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 1 1974 1206 62 0 7 chr1 182087751 182087898 -15107534 + B1_Mus2 SINE Alu 2 147 0 1 1974 375 287 59 59 chr1 182088081 182088233 -15107199 + RSINE1 SINE B4 14 165 0 1 1974 295 244 58 58 chr1 182088504 182088591 -15106841 + RSINE1 SINE B4 79 165 0 1 1974 787 170 67 13 chr1 182090603 182090752 -15104680 - RLTR11A LTR ERVK -371 157 1 1 1974 25 31 0 0 chr1 182094638 182094670 -15100762 + AT_rich Low_complexity Low_complexity 1 32 0 1 1974 363 291 0 72 chr1 182096391 182096502 -15098930 + PB1D10 SINE Alu 7 109 -8 1 1974 1111 166 165 209 chr1 182100885 182101273 -15094159 + ORR1D1 LTR MaLR 4 374 0 1 1974 495 276 21 0 chr1 182105211 182105356 -15090076 + B1F1 SINE Alu 2 149 0 1 1974 326 280 182 27 chr1 182105613 182105800 -15089632 - Charlie5 DNA MER1_type -10 2614 2399 1 1974 226 239 14 40 chr1 182107191 182107265 -15088167 - ID2 SINE ID -10 73 2 1 1974 444 231 21 14 chr1 182111142 182111287 -15084145 + (CATA)n Simple_repeat Simple_repeat 2 147 0 1 1974 252 149 0 0 chr1 182111475 182111522 -15083910 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1974 535 229 59 0 chr1 182111894 182112012 -15083420 + MLT1A0 LTR MaLR 213 337 -28 1 1974 242 251 61 19 chr1 182112625 182112708 -15082724 - MIRc SINE MIR -184 92 9 1 1974 267 273 102 0 chr1 182113462 182113550 -15081882 + B3A SINE B2 86 182 -16 1 1974 842 202 61 0 chr1 182114247 182114410 -15081022 + B3A SINE B2 10 182 -16 1 1974 320 281 100 50 chr1 182114404 182114524 -15080908 + B3A SINE B2 72 197 -1 1 1974 233 163 20 0 chr1 182114524 182114573 -15080859 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1974 1069 203 44 10 chr1 182114615 182114819 -15080613 + B3 SINE B2 3 213 -3 1 1974 1615 231 49 29 chr1 182118309 182118720 -15076712 - MTD LTR MaLR 0 419 1 1 1974 510 87 0 0 chr1 182119760 182119829 -15075603 + B1_Mus1 SINE Alu 1 69 -79 1 1974 422 321 95 35 chr1 182120013 182120213 -15075219 + MER58A DNA MER1_type 11 222 -2 1 1974 510 226 0 57 chr1 182120836 182120958 -15074474 + PB1D10 SINE Alu 1 115 -2 1 1974 183 299 71 53 chr1 182120989 182121102 -15074330 + MIRc SINE MIR 27 141 -127 1 1974 285 277 0 19 chr1 182122447 182122550 -15072882 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1974 369 0 0 0 chr1 182122569 182122610 -15072822 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1974 270 0 0 0 chr1 182122610 182122639 -15072793 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1974 542 275 75 61 chr1 182124831 182125044 -15070388 + MER20 DNA MER1_type 4 219 0 1 1974 252 0 0 0 chr1 182126537 182126565 -15068867 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1974 236 284 37 0 chr1 182127034 182127115 -15068317 + L2a LINE L2 1877 1960 -1459 1 1974 385 322 56 84 chr1 182127179 182127464 -15067968 + ORR1E LTR MaLR 77 353 -6 1 1974 1186 278 194 12 chr1 182127564 182128089 -15067343 - L1M4 LINE L1 -4993 1549 898 1 1974 314 45 23 0 chr1 182128089 182128133 -15067299 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1974 1186 278 194 12 chr1 182128133 182128364 -15067068 - L1M4 LINE L1 -5645 897 655 1 1974 352 379 33 33 chr1 182128485 182128695 -15066737 - L1M4 LINE L1 -6135 407 198 1 1974 1124 117 0 11 chr1 182128736 182128918 -15066514 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1974 452 323 149 56 chr1 182129507 182130256 -15065176 + L2a LINE L2 2532 3406 -20 1 1974 535 234 120 37 chr1 182130265 182130456 -15064976 + MIR SINE MIR 46 252 -10 1 1974 288 295 38 9 chr1 182130887 182130993 -15064439 - Charlie21a DNA MER1_type -728 485 377 1 1974 47 67 0 0 chr1 182131426 182131515 -15063917 + AT_rich Low_complexity Low_complexity 1 89 0 1 1974 345 47 0 0 chr1 182131848 182131891 -15063541 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 1 1974 877 184 0 0 chr1 182131929 182132076 -15063356 - B1_Mus1 SINE Alu 0 148 2 1 1974 626 253 43 70 chr1 182132112 182132280 -15063152 + B3 SINE B2 28 196 -20 1 1974 916 154 7 0 chr1 182132280 182132423 -15063009 + B1_Mus1 SINE Alu 1 144 -4 1 1974 626 253 43 70 chr1 182132423 182132441 -15062991 + B3 SINE B2 197 209 -7 1 1974 22 0 0 0 chr1 182132441 182132463 -15062969 + AT_rich Low_complexity Low_complexity 1 22 0 1 1974 333 0 0 0 chr1 182132551 182132588 -15062844 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1974 531 190 190 0 chr1 182132603 182132719 -15062713 + B3A SINE B2 1 138 -60 1 1974 33 25 0 0 chr1 182132871 182132911 -15062521 + AT_rich Low_complexity Low_complexity 1 40 0 1 1974 729 234 41 18 chr1 182133043 182133229 -15062203 - B3 SINE B2 0 193 1 1 1974 250 224 0 0 chr1 182133939 182133997 -15061435 - L1ME3 LINE L1 -2 6160 6103 1 1974 572 207 9 0 chr1 182134004 182134115 -15061317 - PB1D9 SINE Alu -2 118 7 1 1974 220 287 186 16 chr1 182134005 182134129 -15061303 - B4A SINE B4 -68 224 80 1 1974 3357 114 122 33 chr1 182134338 182134674 -15060758 + RMER6C LTR ERVK 1 377 -313 1 1974 191 61 30 0 chr1 182134674 182134707 -15060725 + (CAGTG)n Simple_repeat Simple_repeat 2 35 0 1 1974 3357 114 122 33 chr1 182134707 182135004 -15060428 + RMER6C LTR ERVK 378 690 0 1 1974 1061 322 65 40 chr1 182135065 182135698 -15059734 - Lx8 LINE L1 -2 7471 6823 1 1974 333 125 0 0 chr1 182135990 182136046 -15059386 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1974 234 150 0 0 chr1 182136090 182136130 -15059302 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1974 2011 132 3 13 chr1 182136380 182136694 -15058738 + RLTR10E LTR ERVK 1 311 0 1 1974 256 329 119 59 chr1 182137317 182137553 -15057879 + MamGypLTR3 LTR Gypsy 226 475 -364 1 1974 1041 8 0 0 chr1 182138153 182138273 -15057159 + RMER17A LTR ERVK 1 120 -631 1 1974 1558 116 32 78 chr1 182138244 182138552 -15056880 + RMER17A LTR ERVK 458 751 0 1 1974 254 272 115 10 chr1 182139115 182139219 -15056213 - ORR1E LTR MaLR -241 118 4 1 1974 1274 145 4 56 chr1 182139307 182139541 -15055891 - URR1A DNA MER1_type -4 222 1 1 1974 326 275 25 0 chr1 182139586 182139666 -15055766 - ID4 SINE ID 0 83 2 1 1974 225 0 0 0 chr1 182139749 182139774 -15055658 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1974 327 294 179 38 chr1 182139840 182139946 -15055486 - B3A SINE B2 -77 121 1 1 1974 247 278 58 127 chr1 182141208 182141381 -15054051 - LTR85a LTR Gypsy? -41 661 501 1 1974 251 305 44 44 chr1 182142299 182142436 -15052996 - ORR1E LTR MaLR -221 138 2 1 1974 235 259 0 0 chr1 182142452 182142506 -15052926 - MLT1J1 LTR MaLR -159 285 232 1 1974 1754 148 65 35 chr1 182142693 182143091 -15052341 - RMER17C LTR ERVK 0 410 1 1 1974 267 398 88 17 chr1 182143212 182143506 -15051926 + L3 LINE CR1 2974 3288 -1201 1 1974 664 221 40 86 chr1 182143539 182143671 -15051761 + RLTR18 LTR ERVK 1 123 -493 1 1974 1386 103 0 20 chr1 182143671 182143869 -15051563 + B2_Mm2 SINE B2 1 194 -1 1 1974 664 221 40 86 chr1 182143869 182143934 -15051498 + RLTR18 LTR ERVK 124 189 -427 1 1974 596 247 73 28 chr1 182143934 182144113 -15051319 + L1MA8 LINE L1 5759 5945 -346 1 1974 192 236 225 0 chr1 182144121 182144210 -15051222 - MIR SINE MIR -72 190 82 1 1974 445 258 168 16 chr1 182145474 182145718 -15049714 - Charlie1b DNA MER1_type -6 517 237 1 1974 676 236 41 24 chr1 182145721 182145890 -15049542 - B3A SINE B2 0 198 27 1 1974 735 294 21 21 chr1 182145889 182146080 -15049352 - B3 SINE B2 -25 191 1 2 1974 746 276 0 35 chr1 182146133 182146302 -15049130 - RSINE1 SINE B4 0 165 3 2 1974 229 347 81 41 chr1 182146338 182146461 -15048971 - Charlie1b DNA MER1_type -298 225 98 1 1974 188 143 0 0 chr1 182146489 182146517 -15048915 - MER5A DNA MER1_type -161 28 1 2 1974 508 292 39 0 chr1 182146930 182147060 -15048372 + ID_B1 SINE B4 79 213 -11 2 1974 5343 122 9 22 chr1 182147351 182148217 -15047215 + RLTR13A LTR ERVK 1 855 0 2 1974 487 286 24 94 chr1 182148397 182148652 -15046780 + L1MB2 LINE L1 4337 4573 -1567 2 1974 1879 164 116 3 chr1 182148672 182149050 -15046382 - MTC LTR MaLR 0 421 1 2 1974 652 316 68 15 chr1 182149084 182149483 -15045949 + L1MB2 LINE L1 4873 5292 -848 2 1974 1201 124 16 11 chr1 182149508 182149695 -15045737 + B2_Mm2 SINE B2 1 188 -7 2 1974 247 217 0 48 chr1 182149715 182149778 -15045654 + L1M3e LINE L1 10 69 -6961 2 1974 315 0 0 0 chr1 182149778 182149813 -15045619 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1974 249 163 0 0 chr1 182149956 182150005 -15045427 + G-rich Low_complexity Low_complexity 1 49 0 2 1974 252 222 48 0 chr1 182150011 182150074 -15045358 - B3A SINE B2 -29 169 104 2 1974 3405 48 2 0 chr1 182150530 182150929 -15044503 - MTB LTR MaLR 0 400 1 2 1974 410 278 116 6 chr1 182151530 182151762 -15043670 + L1MB2 LINE L1 5318 5574 -615 2 1974 298 333 13 0 chr1 182151890 182151968 -15043464 + RSINE1 SINE B4 69 147 -18 2 1974 1042 278 50 52 chr1 182152018 182152462 -15042970 + L1MB2 LINE L1 5714 6156 -15 2 1974 514 112 64 17 chr1 182152472 182152644 -15042788 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1974 352 324 109 29 chr1 182152906 182153073 -15042359 + MLT1L LTR MaLR 109 289 -321 2 1974 374 279 42 78 chr1 182153073 182153240 -15042192 - MLT1A1 LTR MaLR 0 408 248 2 1974 867 181 0 14 chr1 182153919 182154065 -15041367 - B1_Mur3 SINE Alu -5 144 1 2 1974 484 333 8 0 chr1 182154753 182154883 -15040549 + RSINE1 SINE B4 3 133 -32 2 1974 1171 154 191 9 chr1 182154883 182155206 -15040226 - RMER4A LTR ERVK 0 466 1 2 1974 360 0 0 0 chr1 182155219 182155259 -15040173 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1974 188 35 35 0 chr1 182155290 182155319 -15040113 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1974 413 303 80 57 chr1 182155363 182155699 -15039733 + Lx8 LINE L1 7125 7468 -5 2 1974 190 95 0 45 chr1 182155921 182155965 -15039467 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1974 236 79 105 0 chr1 182157029 182157067 -15038365 + MTB LTR MaLR 359 400 0 2 1974 186 167 0 0 chr1 182157560 182157596 -15037836 + T-rich Low_complexity Low_complexity 1 36 0 2 1974 191 248 206 56 chr1 182158482 182158589 -15036843 - L3 LINE CR1 -1415 3074 2952 2 1974 288 77 0 0 chr1 182159159 182159198 -15036234 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1974 733 186 68 20 chr1 182160811 182160959 -15034473 + B3 SINE B2 1 155 -61 2 1974 2553 85 13 27 chr1 182161014 182161388 -15034044 + Lx2 LINE L1 6629 6997 0 2 1974 425 333 0 77 chr1 182161408 182161603 -15033829 + B3A SINE B2 1 180 -18 2 1974 680 291 106 18 chr1 182161718 182162047 -15033385 - L1MB3 LINE L1 -182 6001 5644 2 1974 233 325 89 81 chr1 182162510 182162879 -15032553 + L2a LINE L2 2950 3321 -105 2 1974 207 224 61 0 chr1 182164060 182164109 -15031323 + MIRm SINE MIR 104 155 -121 2 1974 925 297 36 58 chr1 182164356 182164395 -15031037 + ORR1E LTR MaLR 1 38 -321 2 1974 2535 53 15 59 chr1 182164395 182164734 -15030698 + ORR1A2 LTR MaLR 4 327 0 2 1974 925 297 36 58 chr1 182164734 182165059 -15030373 + ORR1E LTR MaLR 39 357 -2 2 1974 479 17 0 16 chr1 182165412 182165473 -15029959 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1974 288 0 0 0 chr1 182165717 182165749 -15029683 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1974 423 0 0 0 chr1 182165845 182165892 -15029540 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1974 267 192 37 37 chr1 182166233 182166287 -15029145 + B1_Mus1 SINE Alu 7 60 -88 2 1974 324 0 0 161 chr1 182166288 182166456 -15028976 + (CAGAG)n Simple_repeat Simple_repeat 5 145 0 2 1974 642 136 19 0 chr1 182166459 182166562 -15028870 + B1_Mus2 SINE Alu 42 146 -1 2 1974 570 183 48 36 chr1 182168302 182168442 -15026990 + RSINE1 SINE B4 2 130 -162 2 1974 1023 313 81 56 chr1 182169480 182169998 -15025434 + MT2A LTR ERVL 3 533 0 2 1974 188 34 0 33 chr1 182170284 182170314 -15025118 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1974 285 297 31 78 chr1 182170399 182170527 -15024905 - MIR3 SINE MIR -26 182 61 2 1974 453 81 0 0 chr1 182175025 182175087 -15020345 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 2 1974 288 77 0 0 chr1 182175088 182175127 -15020305 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2 1974 399 247 195 50 chr1 182175245 182175445 -15019987 - ORR1E LTR MaLR -121 238 10 2 1974 798 288 0 5 chr1 182175471 182175663 -15019769 + B3A SINE B2 1 191 -7 2 1974 238 239 0 0 chr1 182176582 182176628 -15018804 + (CAGGC)n Simple_repeat Simple_repeat 4 49 0 2 1974 723 228 217 30 chr1 182178206 182178346 -15017086 - MTE2b LTR MaLR -62 317 165 2 1974 441 0 0 0 chr1 182178346 182178395 -15017037 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1974 723 228 217 30 chr1 182178395 182178521 -15016911 - MTE2b LTR MaLR -215 164 2 2 1974 619 271 138 63 chr1 182179074 182179342 -15016090 + MER44A DNA MER2_type 7 294 -45 2 1974 306 0 0 0 chr1 182179458 182179492 -15015940 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1974 229 162 72 36 chr1 182179510 182179593 -15015839 + L1ME4a LINE L1 5992 6077 -47 2 1974 921 259 37 0 chr1 182179594 182179810 -15015622 - ID_B1 SINE B4 0 224 1 2 1974 635 235 88 0 chr1 182179863 182179999 -15015433 - B1_Mur1 SINE Alu 0 149 2 2 1974 837 111 44 15 chr1 182181285 182181422 -15014010 - B1_Mur2 SINE Alu 0 149 9 2 1974 251 273 38 25 chr1 182181833 182181912 -15013520 - MIR3 SINE MIR -20 188 109 2 1974 1172 70 0 7 chr1 182182195 182182340 -15013092 - B1_Mm SINE Alu -2 145 2 2 1974 807 67 0 0 chr1 182183316 182183435 -15011997 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1974 186 71 0 0 chr1 182183464 182183492 -15011940 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1974 234 152 0 0 chr1 182183625 182183658 -15011774 - RLTR25B LTR ERVK -546 482 450 2 1974 508 256 14 42 chr1 182183697 182183840 -15011592 + B1F1 SINE Alu 11 149 0 2 1974 641 241 44 29 chr1 182184159 182184296 -15011136 - B1F SINE Alu -2 147 9 2 1974 832 194 95 91 chr1 182184325 182184535 -15010897 - B3 SINE B2 -5 211 1 2 1974 228 192 0 55 chr1 182185641 182185696 -15009736 - ID4_ SINE ID -30 53 2 2 1974 713 211 235 16 chr1 182187051 182187234 -15008198 + ID_B1 SINE B4 2 224 0 2 1974 821 134 55 0 chr1 182187239 182187366 -15008066 + B1_Mus1 SINE Alu 2 135 -13 2 1974 264 224 208 30 chr1 182187651 182187752 -15007680 + MIRm SINE MIR 64 182 -94 2 1974 941 282 37 67 chr1 182188086 182188462 -15006970 - MLT1A0 LTR MaLR 0 365 1 2 1974 279 213 122 85 chr1 182188752 182188834 -15006598 - PB1 SINE Alu -2 125 41 2 1974 682 138 8 25 chr1 182189036 182189155 -15006277 + ORR1B1 LTR MaLR 41 157 -237 2 1974 1766 215 50 87 chr1 182189191 182189710 -15005722 - RLTR20B3 LTR ERVK -56 521 22 2 1974 884 157 182 5 chr1 182189723 182189915 -15005517 + ORR1B1 LTR MaLR 156 381 -13 2 246 403 317 14 14 chr1 182190048 182190195 -15005237 + MLT2B3 LTR ERVL 1 147 -407 2 1975 241 333 0 38 chr1 182190180 182190286 -15005146 + MTD LTR MaLR 107 208 -171 2 1975 288 242 15 8 chr1 182190532 182190665 -15004767 + (TA)n Simple_repeat Simple_repeat 1 134 0 2 1975 501 62 0 0 chr1 182190673 182190738 -15004694 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2 1975 729 296 141 59 chr1 182191343 182191831 -15003601 - MER21B LTR ERV1 -33 830 303 2 1975 331 267 184 13 chr1 182192016 182192168 -15003264 + MTD LTR MaLR 228 405 -14 2 1975 683 311 56 36 chr1 182192232 182192482 -15002950 - LTR80A LTR ERVL -123 460 206 2 1975 371 308 47 40 chr1 182192656 182192805 -15002627 + L1MEb LINE L1 85 234 -5902 2 1975 624 94 0 0 chr1 182193242 182193348 -15002084 + (TC)n Simple_repeat Simple_repeat 1 106 0 2 1975 344 276 183 103 chr1 182193393 182193490 -15001942 + L1MEb LINE L1 4541 4651 -1495 2 1975 553 266 58 0 chr1 182193490 182193629 -15001803 + B1_Mur1 SINE Alu 3 149 0 2 1975 344 276 183 103 chr1 182193629 182193852 -15001580 + L1MEb LINE L1 4652 4905 -1241 2 1975 879 202 85 35 chr1 182193852 182194052 -15001380 - B3 SINE B2 -5 211 2 2 1975 344 276 183 103 chr1 182194052 182194129 -15001303 + L1MEb LINE L1 4906 4971 -1175 2 1975 203 179 0 35 chr1 182194331 182194389 -15001043 + CT-rich Low_complexity Low_complexity 4 59 0 2 1975 339 136 0 0 chr1 182194999 182195058 -15000374 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1975 422 278 81 22 chr1 182195835 182195971 -14999461 + MARNA DNA Mariner 268 411 -175 2 1975 554 220 38 30 chr1 182196010 182196141 -14999291 + MER31A LTR ERV1 1 132 -353 2 1975 237 235 56 77 chr1 182196220 182196363 -14999069 + Lx8 LINE L1 7334 7473 0 2 1975 21 0 0 0 chr1 182196631 182196652 -14998780 + AT_rich Low_complexity Low_complexity 1 21 0 2 1975 540 198 0 31 chr1 182196872 182197034 -14998398 + CT-rich Low_complexity Low_complexity 2 158 0 2 1975 375 242 55 24 chr1 182197086 182197213 -14998219 - L1MB3 LINE L1 -3 6180 6050 2 1975 247 191 28 56 chr1 182197206 182197278 -14998154 - L1MC2 LINE L1 -23 6321 6252 2 1975 456 255 10 0 chr1 182197284 182197382 -14998050 + B3 SINE B2 1 99 -117 2 1975 257 274 31 21 chr1 182197414 182197511 -14997921 - Tigger7 DNA MER2_type -1431 1060 963 2 1975 794 306 105 35 chr1 182197513 182197828 -14997604 - Tigger7 DNA MER2_type -2145 346 10 2 1975 555 299 150 12 chr1 182197852 182198191 -14997241 - L1MB3 LINE L1 -174 6009 5624 2 1975 189 224 0 121 chr1 182199380 182199446 -14995986 - MER5A DNA MER1_type -65 124 67 2 1975 10167 91 29 3 chr1 182199750 182200021 -14995411 + L1_Mus1 LINE L1 4361 4627 -1256 2 1975 396 0 0 0 chr1 182200021 182200065 -14995367 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 1975 10167 61 16 3 chr1 182200065 182201961 -14993471 + L1_Mus1 LINE L1 4628 6567 0 2 1975 1958 175 69 19 chr1 182202016 182202394 -14993038 - MTD LTR MaLR -2 417 21 2 1975 229 299 78 50 chr1 182202662 182202803 -14992629 + MLT1D LTR MaLR 202 346 -159 3 1975 229 342 0 13 chr1 182202867 182202944 -14992488 + MLT1D LTR MaLR 574 649 -5 3 1975 801 217 2 0 chr1 182202994 182203472 -14991960 + (CA)n Simple_repeat Simple_repeat 1 479 0 3 1975 365 214 10 0 chr1 182203492 182203590 -14991842 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1975 800 309 48 8 chr1 182203606 182203857 -14991575 + MER2 DNA MER2_type 15 275 -70 3 1975 1127 116 141 5 chr1 182204221 182204420 -14991012 - URR1A DNA MER1_type 0 226 1 3 1975 1702 175 41 122 chr1 182205517 182205725 -14989707 + ORR1C2 LTR MaLR 2 213 -171 3 1975 1255 250 169 28 chr1 182205725 182206186 -14989246 - RLTR11A2 LTR ERVK 0 527 2 3 1975 1702 175 41 122 chr1 182206186 182206394 -14989038 + ORR1C2 LTR MaLR 214 384 0 3 1975 215 296 0 0 chr1 182206403 182206457 -14988975 - ID4 SINE ID -15 68 15 3 1975 699 253 13 20 chr1 182206510 182206663 -14988769 + RSINE1 SINE B4 3 154 -11 3 1975 327 25 0 0 chr1 182206673 182206713 -14988719 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1975 902 94 0 0 chr1 182207020 182207137 -14988295 + B2_Mm2 SINE B2 2 118 -77 3 1975 229 333 41 41 chr1 182207138 182207235 -14988197 - B4 SINE B4 -189 103 7 3 1975 939 242 184 6 chr1 182207329 182207649 -14987783 + MTE2b LTR MaLR 1 377 -2 3 1975 371 289 45 35 chr1 182208097 182208291 -14987141 - L1ME2 LINE L1 0 6179 5986 3 1975 1346 77 11 27 chr1 182208390 182208416 -14987016 - B2_Mm2 SINE B2 -10 185 162 3 1975 189 0 0 0 chr1 182208416 182208437 -14986995 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 1975 1346 77 11 27 chr1 182208437 182208598 -14986834 - B2_Mm2 SINE B2 -34 161 1 3 1975 647 218 15 0 chr1 182208694 182208827 -14986605 - ID_B1 SINE B4 -1 223 89 3 1975 1118 95 0 0 chr1 182211144 182211292 -14984140 + B1_Mus1 SINE Alu 1 148 0 3 1975 865 238 6 0 chr1 182211590 182211771 -14983661 - B3A SINE B2 -16 182 1 3 1975 180 0 0 0 chr1 182211838 182211858 -14983574 + (TTCG)n Simple_repeat Simple_repeat 2 21 0 3 1975 444 146 14 28 chr1 182211856 182211997 -14983435 + (TCTCTG)n Simple_repeat Simple_repeat 4 142 0 3 1975 233 274 32 16 chr1 182212035 182212098 -14983334 - ID4_ SINE ID -18 65 2 3 1975 731 183 114 0 chr1 182212272 182212403 -14983029 + B1_Mus1 SINE Alu 2 147 -1 3 1975 2409 186 76 31 chr1 182212430 182212526 -14982906 - RLTR20B1 LTR ERVK 0 563 469 3 1975 297 0 0 0 chr1 182212526 182212559 -14982873 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1975 555 16 0 0 chr1 182212559 182212622 -14982810 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1975 2409 186 76 31 chr1 182212622 182213063 -14982369 - RLTR20B1 LTR ERVK -95 468 2 3 1975 239 281 106 9 chr1 182213184 182213315 -14982117 + L1M5 LINE L1 5484 5628 -496 3 1975 661 86 62 8 chr1 182213413 182213542 -14981890 + G-rich Low_complexity Low_complexity 6 141 0 3 1975 963 132 7 14 chr1 182213558 182213704 -14981728 + B1_Mur2 SINE Alu 4 148 -1 3 1975 413 179 0 109 chr1 182215351 182215366 -14980066 + MT2B LTR ERVL 152 153 -448 3 1975 746 150 8 30 chr1 182215366 182215497 -14979935 + B1_Mur4 SINE Alu 2 129 -21 3 1975 367 296 9 78 chr1 182215504 182215630 -14979802 + PB1D10 SINE Alu 6 117 0 3 1975 664 168 131 113 chr1 182215632 182215800 -14979632 + B3 SINE B2 2 172 -44 3 1975 351 0 0 0 chr1 182215801 182215840 -14979592 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1975 498 136 0 0 chr1 182215920 182216001 -14979431 + (GGGGA)n Simple_repeat Simple_repeat 5 85 0 3 1975 534 129 0 0 chr1 182216067 182216152 -14979280 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1975 23 0 0 0 chr1 182217152 182217175 -14978257 + AT_rich Low_complexity Low_complexity 1 23 0 3 1975 401 200 25 0 chr1 182217200 182217280 -14978152 - ID4 SINE ID -1 82 1 3 1975 312 120 0 0 chr1 182217302 182217352 -14978080 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1975 532 279 171 0 chr1 182217381 182217521 -14977911 - RSINE1 SINE B4 0 165 2 3 1975 814 277 30 47 chr1 182217806 182218102 -14977330 - B4 SINE B4 0 292 2 3 1975 345 140 0 0 chr1 182218259 182218316 -14977116 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1975 725 213 8 8 chr1 182218936 182219064 -14976368 + RSINE1 SINE B4 2 129 -36 3 1975 393 22 0 0 chr1 182219085 182219131 -14976301 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1975 337 245 18 53 chr1 182219403 182219498 -14975934 + MTE2b LTR MaLR 15 120 -259 3 1975 307 211 25 38 chr1 182221024 182221103 -14974329 - MER45A DNA Tip100 -7 171 94 3 1975 568 290 32 54 chr1 182221104 182221265 -14974167 + B3A SINE B2 1 159 -39 3 1975 372 22 0 0 chr1 182221265 182221310 -14974122 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1975 568 290 32 54 chr1 182221310 182221334 -14974098 + B3A SINE B2 160 182 -16 3 1975 36 23 0 0 chr1 182221344 182221387 -14974045 + AT_rich Low_complexity Low_complexity 1 43 0 3 1975 584 285 32 32 chr1 182221663 182221884 -14973548 - RMER15 LTR ERVL -12 563 343 3 1975 252 0 0 0 chr1 182221907 182221935 -14973497 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 3 1975 642 13 0 0 chr1 182222269 182222344 -14973088 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1975 776 267 120 58 chr1 182222346 182222604 -14972828 - B4 SINE B4 -18 274 1 3 1975 611 271 23 0 chr1 182222673 182222806 -14972626 + B3A SINE B2 10 145 -53 3 1975 621 40 0 0 chr1 182222810 182222886 -14972546 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 3 1975 297 0 0 0 chr1 182222896 182222929 -14972503 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1975 217 246 66 0 chr1 182223297 182223358 -14972074 - ID4_ SINE ID -3 80 16 3 1975 186 133 0 0 chr1 182223607 182223637 -14971795 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 1975 498 245 85 0 chr1 182223784 182223890 -14971542 + PB1D7 SINE Alu 1 115 -5 3 1975 390 351 0 15 chr1 182224148 182224284 -14971148 + RSINE1 SINE B4 2 135 -30 3 1975 454 252 67 34 chr1 182224518 182224637 -14970795 - ID_B1 SINE B4 0 224 102 3 1975 21 0 0 0 chr1 182224664 182224685 -14970747 + GC_rich Low_complexity Low_complexity 1 21 0 3 1975 288 294 38 45 chr1 182225107 182225302 -14970130 - MLT1A1 LTR MaLR -12 396 184 3 1975 188 403 76 19 chr1 182225603 182225760 -14969672 + L2b LINE L2 3209 3374 -1 3 1975 239 54 27 0 chr1 182225786 182225823 -14969609 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1975 536 273 366 0 chr1 182225829 182226034 -14969398 - B4A SINE B4 -12 280 1 3 1975 273 250 26 0 chr1 182226149 182226225 -14969207 + Charlie4a DNA MER1_type 370 447 -61 3 1975 313 352 110 53 chr1 182226324 182226570 -14968862 + MLT1J LTR MaLR 240 499 -13 3 1975 888 128 15 8 chr1 182226612 182226746 -14968686 + B1_Mus2 SINE Alu 1 135 -12 3 1975 1558 112 287 0 chr1 182226746 182226997 -14968435 - ORR1A2 LTR MaLR -4 323 1 3 1975 384 22 0 0 chr1 182227216 182227261 -14968171 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1975 271 250 56 0 chr1 182227472 182227544 -14967888 - PB1D7 SINE Alu -19 101 26 3 1975 4651 133 5 43 chr1 182227545 182228289 -14967143 + Lx4B LINE L1 6343 7058 0 3 1975 839 288 26 0 chr1 182228806 182228997 -14966435 + ID_B1 SINE B4 14 209 -15 3 1975 855 146 21 7 chr1 182229567 182229712 -14965720 - B1_Mm SINE Alu 0 147 1 3 1975 347 240 49 20 chr1 182229720 182229825 -14965607 + B1_Mur1 SINE Alu 19 149 0 3 1975 839 178 20 0 chr1 182230086 182230232 -14965200 + B1_Mur2 SINE Alu 1 149 0 3 1975 357 154 0 0 chr1 182230299 182230390 -14965042 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 3 1975 557 315 85 60 chr1 182230449 182230495 -14964937 - L1MB5 LINE L1 -6 6168 6127 3 1975 305 237 38 38 chr1 182230495 182230574 -14964858 - ID4 SINE ID -3 80 2 3 1975 557 315 85 60 chr1 182230574 182230892 -14964540 - L1MB5 LINE L1 -48 6126 5795 3 1975 1369 215 95 57 chr1 182231192 182231562 -14963870 + ORR1C2 LTR MaLR 1 384 0 3 1975 536 262 45 58 chr1 182231855 182231887 -14963545 + ID_B1 SINE B4 72 223 -1 3 1975 694 174 49 8 chr1 182231887 182232009 -14963423 + B1F2 SINE Alu 22 148 -1 3 1975 346 230 27 0 chr1 182232056 182232130 -14963302 + ID4_ SINE ID 6 81 -2 3 1975 211 268 94 118 chr1 182233557 182233684 -14961748 + MIR SINE MIR 17 140 -68 3 1975 360 0 0 0 chr1 182234284 182234324 -14961108 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 1975 284 304 145 6 chr1 182234648 182234807 -14960625 + MLT2B4 LTR ERVL 316 496 -60 3 1975 302 308 116 7 chr1 182235352 182235499 -14959933 + MLT1D LTR MaLR 74 236 -269 3 1975 274 351 77 44 chr1 182235870 182236052 -14959380 + MER20B DNA MER1_type 385 572 -211 3 1975 931 178 0 14 chr1 182236729 182236877 -14958555 - B1_Mus2 SINE Alu 0 147 2 3 1975 293 308 28 18 chr1 182237022 182237131 -14958301 - PB1D10 SINE Alu -6 111 2 3 1975 184 333 43 17 chr1 182237733 182237849 -14957583 + MIR3 SINE MIR 85 203 -5 3 1975 630 287 0 27 chr1 182238654 182238801 -14956631 + ID_B1 SINE B4 82 224 0 3 1975 203 171 0 0 chr1 182238899 182238940 -14956492 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 3 1975 1051 240 100 82 chr1 182238940 182239280 -14956152 - MTEb LTR MaLR -33 346 1 3 1975 245 322 0 0 chr1 182239790 182239849 -14955583 + ID4_ SINE ID 7 65 -18 3 1975 938 136 20 7 chr1 182239896 182240044 -14955388 - B1_Mur4 SINE Alu 0 150 1 3 1975 390 234 73 18 chr1 182240231 182240340 -14955092 + PB1D10 SINE Alu 2 116 -1 3 1975 475 237 26 9 chr1 182240533 182240648 -14954784 - PB1D7 SINE Alu -1 119 3 3 1975 258 32 0 0 chr1 182240775 182240806 -14954626 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1975 365 245 160 0 chr1 182240959 182241053 -14954379 - B3A SINE B2 -89 109 1 3 1975 451 204 96 10 chr1 182241072 182241176 -14954256 - RSINE1 SINE B4 -34 131 19 4 1975 999 96 12 6 chr1 182241324 182241492 -14953940 + (TTC)n Simple_repeat Simple_repeat 3 171 0 4 1975 1367 76 17 0 chr1 182241497 182241669 -14953763 - B2_Mm2 SINE B2 -19 176 2 4 1975 22 35 0 0 chr1 182241708 182241737 -14953695 + AT_rich Low_complexity Low_complexity 1 29 0 4 1975 642 279 100 105 chr1 182241818 182242179 -14953253 - ORR1E LTR MaLR 0 359 1 4 1975 243 0 0 0 chr1 182242192 182242219 -14953213 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1975 228 35 0 0 chr1 182242746 182242775 -14952657 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1975 384 335 35 40 chr1 182243796 182243970 -14951462 + LTR16A1 LTR ERVL 26 198 -258 4 1975 434 244 69 98 chr1 182243989 182244162 -14951270 + B4A SINE B4 8 175 -117 4 1975 234 215 167 83 chr1 182244407 182244539 -14950893 + MIRb SINE MIR 23 165 -103 4 1975 1221 159 87 0 chr1 182244677 182244884 -14950548 - URR1B DNA MER1_type 0 225 1 4 1975 343 267 82 33 chr1 182244974 182245207 -14950225 - ORR1E LTR MaLR -18 361 62 4 1975 581 162 9 0 chr1 182245219 182245330 -14950102 + CT-rich Low_complexity Low_complexity 2 113 0 4 1975 226 238 159 0 chr1 182245334 182245397 -14950035 - ID4 SINE ID -10 73 1 4 1975 231 272 7 14 chr1 182246006 182246144 -14949288 + (TGGG)n Simple_repeat Simple_repeat 4 140 0 4 1975 258 227 25 51 chr1 182246468 182246547 -14948885 - ID4 SINE ID -3 80 4 4 1975 319 314 23 86 chr1 182246547 182246721 -14948711 + MIR SINE MIR 100 262 0 4 1975 413 283 35 26 chr1 182246878 182246994 -14948438 - ID_B1 SINE B4 -4 220 104 4 1975 257 262 125 10 chr1 182247617 182247721 -14947711 - PB1D10 SINE Alu 0 117 2 4 1975 385 250 0 14 chr1 182247910 182248052 -14947380 + GA-rich Low_complexity Low_complexity 3 142 0 4 1975 190 247 187 27 chr1 182248251 182248326 -14947106 + L2c LINE L2 3038 3124 -263 4 1975 1406 95 71 5 chr1 182249262 182249474 -14945958 - MTC LTR MaLR 0 421 196 4 1975 622 272 35 53 chr1 182249472 182249643 -14945789 - B4 SINE B4 -123 169 2 4 1975 1125 233 74 95 chr1 182249648 182249731 -14945701 - RLTR16 LTR ERVK 0 505 407 4 1975 1340 85 16 26 chr1 182249731 182249924 -14945508 - B2_Mm2 SINE B2 -4 191 1 4 1975 1125 233 74 95 chr1 182249924 182250356 -14945076 - RLTR16 LTR ERVK -99 406 1 4 1975 278 295 26 103 chr1 182250644 182250799 -14944633 - MTE2a LTR MaLR -236 143 1 4 1975 236 288 61 24 chr1 182250799 182250878 -14944554 + MTEb LTR MaLR 51 132 -227 4 1975 305 255 115 21 chr1 182250988 182251084 -14944348 + MTEb LTR MaLR 275 379 0 4 1975 1235 61 0 0 chr1 182252219 182252366 -14943066 + B1_Mus2 SINE Alu 1 147 0 4 1975 896 60 0 8 chr1 182252590 182252708 -14942724 + B2_Mm2 SINE B2 2 118 -77 4 1975 333 68 0 0 chr1 182252709 182252753 -14942679 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1975 393 22 0 0 chr1 182252757 182252803 -14942629 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1975 595 252 158 19 chr1 182253651 182253809 -14941623 + MTD LTR MaLR 2 181 -238 4 1975 247 245 168 58 chr1 182253815 182253988 -14941444 - RLTR15 LTR ERVK -3 356 165 4 1975 385 312 99 52 chr1 182254150 182254363 -14941069 - L1ME2 LINE L1 -263 5901 5679 4 1975 317 88 35 0 chr1 182254363 182254420 -14941012 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 1975 303 219 15 15 chr1 182254420 182254493 -14940939 - BC1_Mm scRNA scRNA -72 80 8 4 1975 312 252 130 10 chr1 182254554 182254654 -14940778 - PB1D10 SINE Alu -1 116 5 4 1975 614 326 76 27 chr1 182254672 182254896 -14940536 + B4A SINE B4 54 288 -4 4 1975 504 48 0 0 chr1 182254920 182254983 -14940449 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1975 862 234 53 5 chr1 182255025 182255231 -14940201 - ID_B1 SINE B4 -2 222 7 4 1975 1172 153 39 5 chr1 182255287 182255490 -14939942 - B3 SINE B2 -5 211 2 4 1975 296 320 80 5 chr1 182255493 182255694 -14939738 - L1ME2 LINE L1 -1395 4751 4536 4 1975 1275 82 26 42 chr1 182255700 182255892 -14939540 + B2_Mm2 SINE B2 7 195 0 4 1975 367 295 7 28 chr1 182255899 182256042 -14939390 - L1ME2 LINE L1 -1601 4545 4406 4 1975 814 220 119 33 chr1 182256089 182256431 -14939001 + ORR1A3 LTR MaLR 1 390 0 4 1975 294 304 56 19 chr1 182256432 182256593 -14938839 - L1ME2 LINE L1 -1857 4289 4123 4 1975 212 279 56 42 chr1 182258388 182258459 -14936973 + MIRb SINE MIR 115 186 -82 4 1975 420 20 0 0 chr1 182258486 182258535 -14936897 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1975 829 267 9 37 chr1 182258555 182258773 -14936659 - ID_B1 SINE B4 -11 213 2 4 1975 209 33 0 32 chr1 182259408 182259439 -14935993 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1975 216 0 0 0 chr1 182260376 182260400 -14935032 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1975 207 100 0 0 chr1 182260462 182260492 -14934940 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1975 21 0 0 0 chr1 182260807 182260828 -14934604 + AT_rich Low_complexity Low_complexity 1 21 0 4 1975 378 0 0 0 chr1 182261440 182261482 -14933950 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1975 276 170 0 0 chr1 182262687 182262740 -14932692 + (CAG)n Simple_repeat Simple_repeat 2 54 0 4 1975 351 0 0 0 chr1 182266153 182266192 -14929240 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1975 441 97 0 0 chr1 182266192 182266264 -14929168 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1975 320 227 26 13 chr1 182267298 182267374 -14928058 + B4 SINE B4 1 77 -215 4 1975 286 322 50 77 chr1 182267374 182267520 -14927912 + B3 SINE B2 1 216 0 4 1975 500 260 101 28 chr1 182267825 182268003 -14927429 - B3A SINE B2 -7 191 1 4 1975 201 39 0 0 chr1 182268087 182268113 -14927319 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 4 1975 261 57 0 0 chr1 182268190 182268225 -14927207 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1975 223 186 0 0 chr1 182268583 182268626 -14926806 + A-rich Low_complexity Low_complexity 1 43 0 4 1975 307 307 16 73 chr1 182269383 182269506 -14925926 + PB1D10 SINE Alu 1 116 -1 4 1975 351 0 0 0 chr1 182269639 182269678 -14925754 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1975 37 52 0 0 chr1 182270410 182270468 -14924964 + AT_rich Low_complexity Low_complexity 1 58 0 4 1975 4431 87 53 7 chr1 182270468 182271073 -14924359 - Lx4A LINE L1 -1 7057 6425 4 1975 228 193 16 95 chr1 182271199 182271262 -14924170 + RSINE1 SINE B4 12 69 -96 4 1975 297 0 0 0 chr1 182272102 182272135 -14923297 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1975 540 0 0 0 chr1 182272135 182272195 -14923237 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1975 825 204 0 2 chr1 182272465 182272816 -14922616 + CT-rich Low_complexity Low_complexity 1 350 0 4 1975 1169 98 6 0 chr1 182272816 182272990 -14922442 + (TTCTCC)n Simple_repeat Simple_repeat 3 177 0 4 1975 284 248 0 10 chr1 182272990 182273004 -14922428 + polypyrimidine Low_complexity Low_complexity 1 14 0 4 1975 335 373 0 29 chr1 182273005 182273060 -14922372 - ID_B1 SINE B4 -2 222 89 4 1975 341 293 0 12 chr1 182273060 182273143 -14922289 - PB1D10 SINE Alu -28 89 8 4 1975 309 230 264 0 chr1 182274538 182274625 -14920807 - PB1D7 SINE Alu -6 114 5 4 1975 291 238 16 16 chr1 182274568 182274632 -14920800 - ID_B1 SINE B4 -81 143 80 4 1975 796 148 6 6 chr1 182274632 182274788 -14920644 + CT-rich Low_complexity Low_complexity 3 158 0 4 1975 893 97 8 0 chr1 182275384 182275508 -14919924 - B1_Mus2 SINE Alu -1 146 22 4 1975 472 260 39 26 chr1 182275508 182275538 -14919894 - ID_B1 SINE B4 -2 222 67 4 1975 1183 85 6 11 chr1 182276227 182276406 -14919026 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 1975 444 37 0 0 chr1 182276417 182276471 -14918961 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1975 766 61 250 9 chr1 182276484 182276600 -14918832 - B1_Mus1 SINE Alu 0 148 5 4 1975 259 288 95 36 chr1 182276607 182276744 -14918688 + MIR SINE MIR 103 247 -15 4 1975 307 231 31 0 chr1 182278314 182278379 -14917053 + ID2 SINE ID 5 71 -12 4 1975 1057 246 40 15 chr1 182278677 182278949 -14916483 + B4 SINE B4 2 280 -12 4 1975 333 0 0 0 chr1 182279487 182279524 -14915908 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1975 408 40 0 0 chr1 182279573 182279623 -14915809 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1975 709 109 40 0 chr1 182279634 182279735 -14915697 - B2_Mm2 SINE B2 -80 115 11 4 1975 486 76 5 2 chr1 182279818 182279892 -14915540 + B1_Mus1 SINE Alu 1 76 -51 4 1975 371 281 46 46 chr1 182280198 182280351 -14915081 - L1MD LINE L1 -489 5753 5601 4 1975 441 232 57 14 chr1 182280404 182280544 -14914888 - L1MD LINE L1 -757 5602 5457 4 1975 288 218 18 0 chr1 182280609 182280664 -14914768 - ID4_ SINE ID -15 68 13 4 1975 284 311 0 0 chr1 182280790 182280864 -14914568 + BC1_Mm scRNA scRNA 2 75 -77 4 1975 678 150 0 0 chr1 182281309 182281476 -14913956 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 1975 306 172 0 72 chr1 182281476 182281545 -14913887 - HAL1-3A_ME LINE L1 -830 2028 1965 4 1975 25 0 0 0 chr1 182282411 182282436 -14912996 + AT_rich Low_complexity Low_complexity 1 25 0 4 1975 210 227 0 43 chr1 182282613 182282659 -14912773 - ID SINE ID -165 59 16 4 1975 900 114 0 0 chr1 182282764 182282922 -14912510 + (TC)n Simple_repeat Simple_repeat 1 158 0 4 1975 372 175 225 0 chr1 182283206 182283286 -14912146 - MER20 DNA MER1_type -2 217 120 4 1975 368 305 76 0 chr1 182283322 182283427 -14912005 + PB1 SINE Alu 2 114 -13 4 1975 493 292 84 23 chr1 182283922 182284153 -14911279 - MLT1I LTR MaLR -168 276 26 4 1975 306 269 6 12 chr1 182284867 182285036 -14910396 + (TA)n Simple_repeat Simple_repeat 2 169 0 4 1975 375 78 0 0 chr1 182285202 182285253 -14910179 + (ATGGTG)n Simple_repeat Simple_repeat 3 53 0 4 1975 347 266 122 80 chr1 182285411 182285599 -14909833 + RMER15 LTR ERVL 378 573 -2 5 1975 227 297 0 0 chr1 182285680 182285754 -14909678 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1975 230 337 42 79 chr1 182286381 182286571 -14908861 + MTE-int LTR MaLR 1073 1255 -325 5 1975 636 26 0 0 chr1 182287009 182287087 -14908345 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1975 186 103 0 0 chr1 182287308 182287337 -14908095 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1975 419 270 88 44 chr1 182287827 182287986 -14907446 + MER45C DNA Tip100 788 953 0 5 1975 21 0 0 0 chr1 182288670 182288691 -14906741 + GC_rich Low_complexity Low_complexity 1 21 0 5 1975 304 347 111 40 chr1 182289329 182289680 -14905752 - MLT1L LTR MaLR -30 580 205 5 1975 249 33 0 0 chr1 182289774 182289804 -14905628 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1975 548 252 103 7 chr1 182290052 182290188 -14905244 - B1F2 SINE Alu 0 149 1 5 1975 269 302 47 0 chr1 182290422 182290528 -14904904 + (CATG)n Simple_repeat Simple_repeat 1 111 0 5 1975 545 282 35 83 chr1 182290528 182290824 -14904608 - B4 SINE B4 -11 281 8 5 1975 186 43 0 0 chr1 182290907 182290930 -14904502 + (CATATA)n Simple_repeat Simple_repeat 1 23 0 5 1975 405 0 0 0 chr1 182290930 182290974 -14904458 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1975 2169 156 12 80 chr1 182291054 182291478 -14903954 - MTB_Mm LTR MaLR 0 407 13 5 1975 340 321 45 9 chr1 182291626 182291736 -14903696 - PB1D10 SINE Alu -3 114 1 5 1975 354 333 0 10 chr1 182291640 182291740 -14903692 - ID_B1 SINE B4 -48 176 78 5 1975 850 265 8 3 chr1 182291762 182291971 -14903461 - B3A SINE B2 -1 215 1 5 1975 707 0 0 12 chr1 182292229 182292313 -14903119 + (TTC)n Simple_repeat Simple_repeat 2 84 0 5 1975 392 184 143 44 chr1 182295020 182295111 -14900321 + PB1D7 SINE Alu 10 109 -11 5 1975 575 27 14 0 chr1 182295113 182295186 -14900246 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 5 1975 337 222 42 0 chr1 182295195 182295267 -14900165 + ID4 SINE ID 9 83 0 5 1975 219 139 0 0 chr1 182295874 182295910 -14899522 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1975 286 298 73 24 chr1 182298918 182299042 -14896390 - L2b LINE L2 -2 3373 3244 5 1975 926 164 0 0 chr1 182299714 182299848 -14895584 + B1_Mur3 SINE Alu 3 136 -13 5 1975 286 241 177 57 chr1 182300306 182300447 -14894985 - MIRb SINE MIR -58 204 47 5 1975 659 116 9 0 chr1 182301275 182301387 -14894045 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1975 233 151 123 70 chr1 182301417 182301474 -14893958 + MER20 DNA MER1_type 99 158 -61 5 1975 323 271 0 50 chr1 182302308 182302409 -14893023 - MLT1A1 LTR MaLR -3 405 310 5 1975 279 0 0 0 chr1 182302768 182302799 -14892633 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1975 393 22 0 0 chr1 182302801 182302847 -14892585 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1975 2059 152 48 87 chr1 182303318 182303510 -14891922 + MTC LTR MaLR 1 209 -212 5 1975 938 108 35 21 chr1 182303510 182303652 -14891780 + B1_Mur4 SINE Alu 1 144 -6 5 1975 2059 152 48 87 chr1 182303652 182303897 -14891535 + MTC LTR MaLR 210 421 0 5 1975 706 162 221 89 chr1 182304863 182305053 -14890379 - B3 SINE B2 0 216 2 5 1975 427 263 119 0 chr1 182305285 182305403 -14890029 + RSINE1 SINE B4 3 134 -31 5 1975 689 267 80 69 chr1 182306092 182306231 -14889201 - L1MB3 LINE L1 -1 6182 6045 5 1975 323 211 13 66 chr1 182306231 182306307 -14889125 + ID4_ SINE ID 1 72 -11 5 1975 689 267 80 69 chr1 182306307 182306529 -14888903 - L1MB3 LINE L1 -139 6044 5817 5 1975 380 255 8 94 chr1 182306621 182306738 -14888694 - PB1 SINE Alu -8 119 13 5 1975 325 225 19 29 chr1 182306761 182306866 -14888566 - L1MB3 LINE L1 -361 5819 5716 5 1975 185 276 0 116 chr1 182307415 182307501 -14887931 + L2b LINE L2 3290 3365 -10 5 1975 344 306 27 95 chr1 182307552 182307700 -14887732 + MARNA DNA Mariner 423 560 -26 5 1975 616 186 314 14 chr1 182308843 182308983 -14886449 + B4A SINE B4 4 189 -103 5 1975 595 206 116 79 chr1 182308983 182309173 -14886259 + B3A SINE B2 2 198 0 5 1975 616 186 314 14 chr1 182309173 182309239 -14886193 + B4A SINE B4 190 272 -20 5 1975 341 303 120 24 chr1 182309413 182309538 -14885894 + RSINE1 SINE B4 19 155 -10 5 1975 690 307 44 94 chr1 182310341 182310704 -14884728 - ORR1E LTR MaLR -5 354 10 5 1975 1420 88 16 0 chr1 182311807 182311999 -14883433 + B2_Mm2 SINE B2 1 195 0 5 1975 187 319 106 61 chr1 182312438 182312618 -14882814 - L2c LINE L2 -200 3187 3000 5 1975 656 174 17 0 chr1 182312939 182313054 -14882378 - PB1D9 SINE Alu -1 119 3 5 1975 212 303 143 22 chr1 182313111 182313202 -14882230 + PB1 SINE Alu 26 127 0 5 1975 372 43 0 0 chr1 182313592 182313638 -14881794 + (CATA)n Simple_repeat Simple_repeat 4 49 0 5 1975 744 176 7 29 chr1 182313799 182313939 -14881493 + B3 SINE B2 1 137 -79 5 1975 249 357 15 52 chr1 182314328 182314464 -14880968 + MIRc SINE MIR 93 223 -45 5 1975 366 282 42 64 chr1 182315172 182315365 -14880067 - MIRb SINE MIR -78 190 1 5 1975 277 292 124 43 chr1 182315533 182315694 -14879738 - MER5B DNA MER1_type -2 176 3 5 1975 433 303 9 0 chr1 182315953 182316062 -14879370 - ID_B1 SINE B4 -33 191 82 5 1975 752 162 88 0 chr1 182316273 182316409 -14879023 - B1_Mus1 SINE Alu 0 148 1 5 1975 251 246 0 0 chr1 182316937 182316994 -14878438 + C-rich Low_complexity Low_complexity 1 57 0 5 1975 275 0 29 0 chr1 182318994 182319029 -14876403 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1975 479 232 120 0 chr1 182319049 182319174 -14876258 + B1F SINE Alu 2 141 -8 5 1975 361 233 0 0 chr1 182319216 182319289 -14876143 + ID4_ SINE ID 1 73 -10 5 1975 339 240 0 13 chr1 182319222 182319298 -14876134 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 5 1975 204 125 0 0 chr1 182319907 182319939 -14875493 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1975 326 205 13 0 chr1 182319994 182320072 -14875360 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1975 483 18 0 0 chr1 182320317 182320373 -14875059 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 5 1976 359 300 55 0 chr1 182321252 182321362 -14874070 - PB1D7 SINE Alu 0 120 5 5 1976 434 314 39 47 chr1 182321454 182321670 -14873762 - MIRc SINE MIR -14 254 43 5 1976 3373 141 17 24 chr1 182321760 182322349 -14873083 + RMER4B LTR ERVK 1 585 0 5 1976 216 0 0 0 chr1 182323452 182323476 -14871956 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1976 369 131 0 0 chr1 182324350 182324411 -14871021 + (CGTG)n Simple_repeat Simple_repeat 2 62 0 5 1976 960 236 153 38 chr1 182324523 182324704 -14870728 - MTEa LTR MaLR 0 379 176 5 1976 1340 12 141 18 chr1 182324704 182324874 -14870558 - B2_Mm1a SINE B2 0 193 3 5 1976 960 236 153 38 chr1 182324874 182325032 -14870400 - MTEa LTR MaLR -204 175 1 5 1976 240 320 107 51 chr1 182325950 182326184 -14869248 + L2 LINE L2 2705 2951 -468 5 1976 1086 84 7 14 chr1 182326437 182326581 -14868851 + B1_Mus1 SINE Alu 5 147 -1 5 1976 1127 159 60 0 chr1 182326759 182326960 -14868472 - B3 SINE B2 -3 213 1 5 1976 276 30 0 0 chr1 182327259 182327292 -14868140 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1976 908 219 18 67 chr1 182327414 182327639 -14867793 + B3 SINE B2 3 216 0 5 1976 425 223 223 0 chr1 182327709 182327821 -14867611 - B1_Mur1 SINE Alu -12 137 1 5 1976 392 335 17 34 chr1 182328242 182328477 -14866955 - L1M5 LINE L1 -328 5796 5566 5 1976 396 0 0 0 chr1 182329416 182329460 -14865972 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1976 215 79 26 0 chr1 182329545 182329583 -14865849 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1976 243 88 0 0 chr1 182329601 182329635 -14865797 + (ATGTG)n Simple_repeat Simple_repeat 1 34 0 5 1976 460 276 156 71 chr1 182329637 182329775 -14865657 - B4A SINE B4 0 292 170 5 1976 189 0 0 0 chr1 182329775 182329796 -14865636 + (ACTG)n Simple_repeat Simple_repeat 3 23 0 5 1976 460 276 156 71 chr1 182329796 182329926 -14865506 - B4A SINE B4 -123 169 1 5 1976 287 381 168 15 chr1 182329937 182330211 -14865221 - MER97c DNA MER1_type? -489 601 286 5 1976 231 36 0 0 chr1 182330643 182330671 -14864761 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 5 1976 201 224 70 120 chr1 182331251 182331393 -14864039 + L4 LINE RTE 1701 1835 -194 5 1976 261 218 345 0 chr1 182332384 182332494 -14862938 - Charlie8 DNA MER1_type -2210 218 71 5 1976 405 0 0 0 chr1 182334640 182334685 -14860747 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1976 327 302 65 32 chr1 182335152 182335275 -14860157 - MIRb SINE MIR -113 155 29 5 1976 374 325 71 25 chr1 182335302 182335520 -14859912 + MIRb SINE MIR 42 262 0 5 1976 480 35 0 0 chr1 182336072 182336130 -14859302 + (TCC)n Simple_repeat Simple_repeat 2 59 0 5 1976 1273 151 36 27 chr1 182338707 182338931 -14856501 + URR1A DNA MER1_type 1 226 0 5 1976 237 315 0 0 chr1 182339654 182339727 -14855705 + MER45A DNA Tip100 83 155 -23 5 1976 324 133 0 0 chr1 182340283 182340343 -14855089 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1976 1185 178 9 0 chr1 182341344 182341557 -14853875 - URR1B DNA MER1_type 0 225 11 5 1976 291 28 0 0 chr1 182341771 182341807 -14853625 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1976 222 345 155 0 chr1 182341817 182341901 -14853531 - PB1 SINE Alu -20 107 11 5 1976 518 270 177 62 chr1 182344767 182344851 -14850581 - B4A SINE B4 -2 290 199 5 1976 1106 134 196 0 chr1 182344851 182345030 -14850402 + B3 SINE B2 3 216 0 5 1976 518 270 177 62 chr1 182345030 182345205 -14850227 - B4A SINE B4 -94 198 1 5 1976 493 55 0 27 chr1 182349781 182349856 -14845576 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1976 583 272 42 18 chr1 182349862 182350027 -14845405 - Tigger7 DNA MER2_type -2082 409 241 5 1976 208 346 50 0 chr1 182350632 182350733 -14844699 - MIRb SINE MIR -145 123 18 6 1976 223 288 17 0 chr1 182355213 182355272 -14840160 - MIRc SINE MIR -112 156 97 6 1976 1034 46 69 8 chr1 182355424 182355555 -14839877 + B1_Mus1 SINE Alu 2 140 -8 6 1976 1265 35 0 0 chr1 182357030 182357175 -14838257 + B1_Mus2 SINE Alu 3 147 0 6 1976 594 242 53 53 chr1 182359978 182360148 -14835284 - RLTR40 LTR ERVK -418 399 230 6 1976 1010 170 9 100 chr1 182360987 182361096 -14834336 + URR1B DNA MER1_type 2 106 -119 6 1976 1399 44 53 37 chr1 182361096 182361285 -14834147 - B2_Mm1t SINE B2 0 193 2 6 1976 1010 170 9 100 chr1 182361285 182361404 -14834028 + URR1B DNA MER1_type 107 209 -16 6 1976 758 323 25 17 chr1 182361636 182361977 -14833455 - L1_Mur3 LINE L1 -3191 2689 2340 6 1976 348 24 0 0 chr1 182362406 182362447 -14832985 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1976 187 0 28 83 chr1 182362658 182362694 -14832738 + (TATG)n Simple_repeat Simple_repeat 3 36 0 6 1976 204 208 0 0 chr1 182363040 182363088 -14832344 + C-rich Low_complexity Low_complexity 1 48 0 6 1976 828 222 80 137 chr1 182365450 182365851 -14829581 + MTE2a LTR MaLR 2 379 0 6 1976 342 0 0 0 chr1 182366969 182367007 -14828425 + (GGGTG)n Simple_repeat Simple_repeat 2 39 0 6 1976 335 354 46 0 chr1 182367524 182367699 -14827733 + MER46C DNA MER2_type 118 300 -38 6 1976 366 132 11 46 chr1 182373301 182373388 -14822044 + CT-rich Low_complexity Low_complexity 1 84 0 6 1976 2120 151 6 14 chr1 182373400 182373762 -14821670 + RLTR15 LTR ERVK 1 359 0 6 1976 475 287 253 17 chr1 182373775 182374123 -14821309 - MLT1D LTR MaLR -29 476 47 6 1976 26 0 0 0 chr1 182375574 182375600 -14819832 + AT_rich Low_complexity Low_complexity 1 26 0 6 1976 394 310 26 8 chr1 182375609 182375726 -14819706 - RSINE1 SINE B4 -17 148 30 6 1976 361 211 115 0 chr1 182375807 182375911 -14819521 - PB1D10 SINE Alu 0 117 2 6 1976 380 237 248 80 chr1 182376336 182376574 -14818858 + B4 SINE B4 3 280 -12 6 1976 297 0 0 0 chr1 182376610 182376643 -14818789 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1976 519 60 0 0 chr1 182377651 182377718 -14817714 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1976 229 324 0 0 chr1 182378015 182378086 -14817346 + ID4_ SINE ID 2 72 -11 6 1976 372 301 106 71 chr1 182379705 182380016 -14815416 + MLT1A LTR MaLR 11 332 -42 6 1976 297 0 0 0 chr1 182380181 182380214 -14815218 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1976 221 199 0 111 chr1 182381186 182381367 -14814065 + (CCCTG)n Simple_repeat Simple_repeat 5 165 0 6 1976 295 349 71 66 chr1 182381816 182382028 -14813404 + MIRb SINE MIR 56 268 0 6 1976 327 301 108 18 chr1 182382039 182382205 -14813227 - MLT1L LTR MaLR -114 496 316 6 1976 412 344 49 0 chr1 182384048 182384211 -14811221 + RMER15 LTR ERVL 403 573 -2 6 1976 215 276 69 0 chr1 182384570 182384628 -14810804 + B4 SINE B4 1 62 -230 6 1976 2411 135 112 0 chr1 182384629 182385065 -14810367 + RLTR11A2 LTR ERVK 1 485 -42 6 1976 1362 133 0 0 chr1 182385066 182385284 -14810148 - ORR1A4 LTR MaLR -111 218 1 6 1976 835 184 7 20 chr1 182385964 182386114 -14809318 + B1_Mur2 SINE Alu 1 148 -1 6 1976 212 250 0 10 chr1 182386152 182386249 -14809183 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1976 392 229 52 22 chr1 182386463 182386651 -14808781 + MIR SINE MIR 15 192 -70 6 1976 572 222 29 47 chr1 182386852 182387022 -14808410 + L1MB3 LINE L1 5971 6137 -46 6 1976 225 94 0 0 chr1 182387158 182387190 -14808242 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1976 425 354 70 84 chr1 182387274 182387632 -14807800 + ORR1E LTR MaLR 6 358 -1 6 1976 206 316 25 50 chr1 182389384 182389464 -14805968 + MIR3 SINE MIR 90 167 -41 6 1976 204 40 0 0 chr1 182389632 182389657 -14805775 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6 1976 882 116 0 0 chr1 182390512 182390650 -14804782 + (GGGA)n Simple_repeat Simple_repeat 3 140 0 6 1976 217 311 14 0 chr1 182390663 182390737 -14804695 + GA-rich Low_complexity Low_complexity 1 75 0 6 1976 23 0 0 0 chr1 182390858 182390881 -14804551 + AT_rich Low_complexity Low_complexity 1 23 0 6 1976 400 244 58 16 chr1 182391872 182391993 -14803439 - MIR SINE MIR -28 234 109 6 1976 228 264 42 0 chr1 182391999 182392071 -14803361 + L1MD LINE L1 5013 5087 -1059 6 1976 188 292 62 0 chr1 182392089 182392154 -14803278 - MIR SINE MIR -121 141 73 6 1976 182 231 0 0 chr1 182392154 182392193 -14803239 - MIR SINE MIR -159 103 65 6 1976 275 98 39 0 chr1 182396066 182396117 -14799315 + (AGGGGG)n Simple_repeat Simple_repeat 1 53 0 6 1976 1885 133 119 0 chr1 182396323 182396675 -14798757 + ORR1B1 LTR MaLR 1 394 0 6 1976 1260 63 29 0 chr1 182397063 182397237 -14798195 + B2_Mm1t SINE B2 1 179 -14 6 1976 298 159 0 39 chr1 182397322 182397389 -14798043 + B2_Mm2 SINE B2 47 109 -107 6 1976 396 0 0 0 chr1 182397404 182397448 -14797984 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1976 188 135 27 0 chr1 182399024 182399061 -14796371 + CT-rich Low_complexity Low_complexity 4 41 0 6 1976 243 136 23 0 chr1 182399084 182399128 -14796304 - ID_B1 SINE B4 -58 166 122 6 1976 270 321 51 13 chr1 182399225 182399383 -14796049 - L1MC4 LINE L1 -141 7901 7738 6 1976 468 254 0 3 chr1 182399692 182399815 -14795617 - B1F2 SINE Alu -28 121 1 6 1976 950 266 0 5 chr1 182400205 182400409 -14795023 + B3 SINE B2 2 204 -12 6 1976 509 304 92 48 chr1 182400897 182401125 -14794307 - ORR1E LTR MaLR -121 238 1 6 1976 396 0 0 0 chr1 182402627 182402671 -14792761 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1976 236 317 11 103 chr1 182403003 182403204 -14792228 + MTEb LTR MaLR 197 379 0 6 1976 513 84 0 0 chr1 182403402 182403473 -14791959 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 6 1976 253 227 56 70 chr1 182403557 182403628 -14791804 - B1F1 SINE Alu -41 108 39 6 1976 312 309 52 68 chr1 182403987 182404237 -14791195 + Charlie5 DNA MER1_type 2371 2616 -8 6 1976 333 0 0 0 chr1 182404332 182404369 -14791063 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1976 259 322 15 90 chr1 182404382 182404515 -14790917 - L2 LINE L2 -572 2847 2725 6 1976 848 178 150 0 chr1 182404520 182404700 -14790732 + B3 SINE B2 4 210 -6 6 1976 255 267 13 26 chr1 182404794 182404871 -14790561 + B3A SINE B2 3 78 -120 6 1976 368 270 28 28 chr1 182405091 182405323 -14790109 + (CA)n Simple_repeat Simple_repeat 1 232 0 6 1976 272 175 0 16 chr1 182405340 182405404 -14790028 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1976 816 322 167 19 chr1 182405530 182406199 -14789233 - L2 LINE L2 -923 2496 1729 6 1976 180 0 0 0 chr1 182407221 182407241 -14788191 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1976 195 162 0 0 chr1 182407443 182407480 -14787952 + CT-rich Low_complexity Low_complexity 4 40 0 6 1976 285 287 49 78 chr1 182407481 182407583 -14787849 - PB1D10 SINE Alu -7 110 12 6 1976 294 50 0 0 chr1 182407944 182407984 -14787448 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1976 797 157 7 13 chr1 182408252 182408401 -14787031 + B1_Mus1 SINE Alu 1 148 0 6 1976 3202 50 7 2 chr1 182409682 182410087 -14785345 + MTB_Mm LTR MaLR 1 407 0 6 1976 381 232 0 0 chr1 182410212 182410307 -14785125 + A-rich Low_complexity Low_complexity 1 95 0 6 1976 540 254 49 0 chr1 182410932 182411074 -14784358 + B1F1 SINE Alu 1 149 0 6 1976 234 140 20 20 chr1 182411082 182411133 -14784299 + GA-rich Low_complexity Low_complexity 1 51 0 6 1976 396 0 0 0 chr1 182411449 182411493 -14783939 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1976 186 103 0 0 chr1 182413401 182413430 -14782002 + (CCG)n Simple_repeat Simple_repeat 3 31 0 6 1976 369 0 0 0 chr1 182414137 182414178 -14781254 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1976 280 351 83 110 chr1 182415350 182415878 -14779554 - MLT1G3 LTR MaLR 0 595 82 6 1976 461 244 14 88 chr1 182416110 182416258 -14779174 - MTEa LTR MaLR -11 368 232 6 1976 300 332 156 92 chr1 182416766 182417094 -14778338 - ORR1E LTR MaLR 0 359 11 6 1976 773 261 37 14 chr1 182417163 182417381 -14778051 + ID_B1 SINE B4 2 224 0 6 1976 365 226 31 28 chr1 182418576 182418685 -14776747 + MIRc SINE MIR 60 171 -91 6 1976 245 267 153 26 chr1 182419282 182419481 -14775951 + MLT1E1 LTR MaLR 116 333 -347 6 1976 240 35 0 0 chr1 182420587 182420616 -14774816 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1976 288 260 51 25 chr1 182420906 182420985 -14774447 - MIR3 SINE MIR -21 187 107 6 1976 456 194 94 28 chr1 182421045 182421151 -14774281 - PB1D10 SINE Alu -1 116 4 6 1976 198 0 0 0 chr1 182421473 182421495 -14773937 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 6 1976 751 228 0 7 chr1 182421529 182421679 -14773753 - B1_Mur1 SINE Alu 0 149 1 6 1976 2837 199 149 44 chr1 182421760 182422571 -14772861 + RMER19B LTR ERVK 7 902 0 6 1976 390 311 24 124 chr1 182422704 182422994 -14772438 + L1MC5 LINE L1 6788 7048 -913 6 1976 237 274 84 47 chr1 182423385 182423492 -14771940 + MIRm SINE MIR 40 150 -126 6 1976 2751 46 3 3 chr1 182424454 182424800 -14770632 + ORR1A1 LTR MaLR 1 346 0 6 1976 1218 308 22 9 chr1 182425565 182425886 -14769546 + Tigger7 DNA MER2_type 12 336 -2155 6 1976 401 273 11 153 chr1 182426451 182426641 -14768791 + RSINE1 SINE B4 3 165 0 6 1976 1383 112 11 123 chr1 182426760 182427044 -14768388 - RLTR23 LTR ERV1 0 430 179 6 1976 791 184 238 22 chr1 182427037 182427260 -14768172 - RLTR23 LTR ERV1 -159 271 1 6 1976 405 39 0 0 chr1 182427583 182427634 -14767798 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 6 1976 696 230 26 11 chr1 182427896 182428085 -14767347 + ORR1C2 LTR MaLR 3 194 -190 7 1976 370 139 25 25 chr1 182428091 182428172 -14767260 + CT-rich Low_complexity Low_complexity 3 83 0 7 1976 1022 164 10 49 chr1 182428178 182428383 -14767049 + ORR1C2 LTR MaLR 175 371 -13 7 1976 473 358 81 18 chr1 182428614 182428947 -14766485 - L1MD LINE L1 -2125 4021 3668 7 1976 1723 194 45 30 chr1 182429268 182429694 -14765738 + RMER10A LTR ERVL 1 432 -10 7 1976 942 221 59 0 chr1 182429753 182429957 -14765475 + B3 SINE B2 1 216 0 7 1976 1720 127 59 73 chr1 182430060 182430401 -14765031 - RLTR23 LTR ERV1 -1 429 94 7 1976 339 167 39 0 chr1 182430799 182430877 -14764555 + MLT2B4 LTR ERVL 1 81 -475 7 1976 381 249 56 38 chr1 182430971 182431122 -14764310 + MLT2B4 LTR ERVL 370 534 -26 7 1976 508 314 153 3 chr1 182432102 182432422 -14763010 + MLT1B LTR MaLR 23 390 0 7 1976 505 306 65 68 chr1 182432528 182432968 -14762464 - RLTR12B LTR ERVK -46 313 4 7 1976 22 0 0 0 chr1 182433538 182433560 -14761872 + AT_rich Low_complexity Low_complexity 1 22 0 7 1976 288 0 0 0 chr1 182434360 182434392 -14761040 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1976 752 187 175 6 chr1 182434419 182434489 -14760943 + B3 SINE B2 2 71 -145 7 1976 342 0 0 0 chr1 182434489 182434527 -14760905 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1976 752 187 175 6 chr1 182434527 182434639 -14760793 + B3 SINE B2 72 213 -3 7 1976 209 316 0 0 chr1 182434873 182434949 -14760483 + (CAT)n Simple_repeat Simple_repeat 1 76 0 7 1976 1749 219 29 36 chr1 182434953 182435431 -14760001 + RLTR11A2 LTR ERVK 5 479 -48 7 1976 1558 127 86 97 chr1 182435900 182436250 -14759182 - ORR1B1 LTR MaLR -8 386 41 7 1976 555 254 105 11 chr1 182436581 182436772 -14758660 - RMER20B LTR ERVK -272 355 147 7 1976 1152 69 0 0 chr1 182437984 182438129 -14757303 + B1_Mus1 SINE Alu 3 147 -1 7 1976 263 204 21 0 chr1 182438222 182438315 -14757117 + CT-rich Low_complexity Low_complexity 3 97 0 7 1976 229 327 20 10 chr1 182438395 182438497 -14756935 + ORR1E LTR MaLR 256 358 -1 7 1976 631 35 0 23 chr1 182438539 182438627 -14756805 + (TTTCC)n Simple_repeat Simple_repeat 5 90 0 7 1976 414 24 0 131 chr1 182439709 182439854 -14755578 + (CCCTAG)n Simple_repeat Simple_repeat 1 126 0 7 1976 1364 219 20 66 chr1 182441095 182441487 -14753945 + ORR1D1 LTR MaLR 1 374 0 7 1976 3379 23 2 0 chr1 182441906 182442301 -14753131 + MTA_Mm LTR MaLR 1 396 0 7 1976 301 22 21 21 chr1 182442472 182442519 -14752913 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 7 1976 401 69 0 0 chr1 182442519 182442577 -14752855 - B1_Mm SINE Alu -1 146 89 7 1976 240 324 50 22 chr1 182442852 182442991 -14752441 - MIR SINE MIR -109 153 11 7 1976 508 226 52 22 chr1 182443199 182443335 -14752097 - B3A SINE B2 -58 140 1 7 1976 1067 184 61 48 chr1 182443691 182443919 -14751513 - MTD LTR MaLR -188 231 1 7 1976 267 218 148 0 chr1 182444299 182444383 -14751049 + PB1D10 SINE Alu 12 114 -13 7 1976 23 0 0 0 chr1 182444936 182444959 -14750473 + AT_rich Low_complexity Low_complexity 1 23 0 7 1976 464 208 256 0 chr1 182445315 182445483 -14749949 - RMER10A LTR ERVL 0 398 188 7 1976 781 191 134 6 chr1 182445510 182445531 -14749901 - B3 SINE B2 -14 202 179 7 1976 330 26 0 0 chr1 182445531 182445570 -14749862 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1976 1199 64 19 0 chr1 182445570 182445727 -14749705 - B2_Mm1a SINE B2 -33 160 1 7 1976 890 198 101 5 chr1 182445727 182445915 -14749517 - RMER10A LTR ERVL -236 206 1 7 1976 640 331 56 16 chr1 182446353 182446602 -14748830 - MER70B LTR ERVL -102 476 218 7 1976 184 292 0 97 chr1 182447458 182447530 -14747902 + L2 LINE L2 1503 1567 -1852 7 1976 255 311 21 12 chr1 182448074 182448167 -14747265 + MTEb LTR MaLR 287 379 0 7 1976 588 297 93 21 chr1 182448167 182448402 -14747030 - MER2 DNA MER2_type -20 325 74 7 1976 226 258 32 16 chr1 182448787 182448850 -14746582 - PB1D9 SINE Alu -55 65 2 7 1976 292 297 88 66 chr1 182448818 182448842 -14746590 - MT2B2 LTR ERVL -292 292 200 7 1976 520 200 26 2 chr1 182448842 182448945 -14746487 - PB1D7 SINE Alu -13 107 1 7 1976 330 164 123 0 chr1 182449060 182449133 -14746299 + ID_B1 SINE B4 115 196 -28 7 1976 219 219 122 14 chr1 182449067 182449141 -14746291 + B1_Mus1 SINE Alu 43 124 -24 7 1976 1240 41 0 26 chr1 182449263 182449414 -14746018 + B1_Mus1 SINE Alu 2 148 0 7 1976 293 258 237 0 chr1 182451023 182451120 -14744312 + PB1D7 SINE Alu 1 120 0 7 1976 579 231 15 22 chr1 182451123 182451260 -14744172 + B1_Mus1 SINE Alu 4 139 -9 7 1976 243 0 0 0 chr1 182451260 182451287 -14744145 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1976 205 265 0 0 chr1 182451318 182451367 -14744065 + (TTAGGG)n Simple_repeat Simple_repeat 6 54 0 7 1976 274 196 22 0 chr1 182451909 182452001 -14743431 + CT-rich Low_complexity Low_complexity 2 95 0 7 1976 300 137 0 0 chr1 182452003 182452054 -14743378 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1976 189 0 0 0 chr1 182452054 182452075 -14743357 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 30 670 290 46 15 chr1 182452120 182452316 -14743116 + ORR1E LTR MaLR 55 256 -103 7 1977 910 69 8 8 chr1 182452359 182452491 -14742941 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 7 1977 21 0 0 0 chr1 182452494 182452515 -14742917 + AT_rich Low_complexity Low_complexity 1 21 0 7 1977 281 341 129 7 chr1 182452533 182452672 -14742760 - RSINE1 SINE B4 -6 159 4 7 1977 430 257 7 7 chr1 182452680 182452829 -14742603 + CT-rich Low_complexity Low_complexity 3 151 0 7 1977 245 299 0 0 chr1 182452845 182452912 -14742520 - PB1D10 SINE Alu -28 89 23 7 1977 333 278 0 0 chr1 182452966 182453063 -14742369 + L1MB8 LINE L1 6080 6176 -2 7 1977 338 302 98 30 chr1 182453074 182453238 -14742194 + L1ME3B LINE L1 5887 6061 -179 7 1977 341 284 0 0 chr1 182453381 182453462 -14741970 - B1F SINE Alu -4 145 65 7 1977 4286 82 37 16 chr1 182453769 182454387 -14741045 + Lx LINE L1 6024 6654 0 7 1977 418 295 52 32 chr1 182454867 182455021 -14740411 - RSINE1 SINE B4 -1 164 8 7 1977 732 284 9 35 chr1 182455874 182456100 -14739332 - MER21B LTR ERV1 -25 838 619 7 1977 21 36 0 0 chr1 182456112 182456140 -14739292 + AT_rich Low_complexity Low_complexity 1 28 0 7 1977 695 157 0 41 chr1 182456154 182456192 -14739240 - Lx9 LINE L1 -6 7638 7604 7 1977 2288 116 3 58 chr1 182456192 182456540 -14738892 - ORR1A4 LTR MaLR 0 329 1 7 1977 695 157 0 41 chr1 182456540 182456647 -14738785 - Lx9 LINE L1 -41 7603 7499 7 1977 450 321 84 49 chr1 182456647 182456850 -14738582 - B3 SINE B2 -5 211 2 7 1977 454 250 28 0 chr1 182456850 182456896 -14738536 - MER21B LTR ERV1 -541 322 274 7 1977 598 148 16 16 chr1 182457509 182457525 -14737907 + (TGGA)n Simple_repeat Simple_repeat 4 19 0 7 1977 3364 41 8 0 chr1 182457525 182457918 -14737514 - MTA_Mm LTR MaLR 0 396 1 7 1977 598 148 16 16 chr1 182457918 182458025 -14737407 + (TGGA)n Simple_repeat Simple_repeat 4 111 0 7 1977 983 198 96 0 chr1 182458943 182459140 -14736292 + B3 SINE B2 1 216 0 7 1977 356 298 69 17 chr1 182459571 182459687 -14735745 + B3A SINE B2 1 122 -76 7 1977 418 89 11 43 chr1 182459689 182459783 -14735649 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1977 216 163 0 0 chr1 182460475 182460518 -14734914 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 7 1977 254 294 156 24 chr1 182460797 182460964 -14734468 + MLT1K LTR MaLR 407 595 0 7 1977 438 295 99 27 chr1 182461181 182461357 -14734075 + ORR1E LTR MaLR 14 176 -194 7 1977 22 70 0 0 chr1 182461506 182461549 -14733883 + AT_rich Low_complexity Low_complexity 1 43 0 7 1977 4549 172 45 74 chr1 182462309 182462949 -14732483 + RLTR13C1 LTR ERVK 1 590 -393 7 1977 4531 149 147 6 chr1 182462949 182463788 -14731644 - RMER17B LTR ERVK -1 957 1 7 1977 4549 172 45 74 chr1 182463788 182464159 -14731273 + RLTR13C1 LTR ERVK 591 983 0 7 1977 378 0 0 0 chr1 182464207 182464249 -14731183 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 7 1977 456 311 0 56 chr1 182464251 182464377 -14731055 + ID_B1 SINE B4 105 223 -1 7 1977 227 196 0 0 chr1 182464614 182464670 -14730762 - Lx2B LINE L1 0 7000 6945 7 1977 676 294 67 96 chr1 182464671 182465089 -14730343 + RMER5 LTR ERV1 127 532 -2 7 1977 255 338 12 0 chr1 182465101 182465181 -14730251 + MLT1L LTR MaLR 3 83 -527 7 1977 230 266 31 0 chr1 182465467 182465531 -14729901 + MLT1L LTR MaLR 541 606 -4 7 1977 340 330 48 19 chr1 182465931 182466036 -14729396 + RSINE1 SINE B4 8 115 -50 7 1977 396 0 0 0 chr1 182466037 182466081 -14729351 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1977 713 212 138 36 chr1 182466205 182466401 -14729031 + B3 SINE B2 1 216 0 7 1977 546 291 144 31 chr1 182466911 182467171 -14728261 - ORR1E LTR MaLR -98 272 4 7 1977 235 254 130 87 chr1 182467632 182467770 -14727662 + RMER15 LTR ERVL 3 146 -429 7 1977 445 256 21 42 chr1 182467822 182467965 -14727467 + RMER15 LTR ERVL 346 485 -90 7 1977 322 329 60 83 chr1 182468284 182468536 -14726896 + L1ME2 LINE L1 5786 6031 -133 7 1977 229 232 44 99 chr1 182468541 182468632 -14726800 - MLT1A1 LTR MaLR 0 408 323 7 1977 234 208 21 0 chr1 182468707 182468755 -14726677 + GA-rich Low_complexity Low_complexity 2 50 0 7 1977 270 276 74 106 chr1 182468755 182468966 -14726466 - MLT1A1 LTR MaLR -187 187 1 7 1977 313 184 92 0 chr1 182468968 182469044 -14726388 + L1ME2 LINE L1 6034 6116 -48 7 1977 3068 58 154 10 chr1 182469054 182469469 -14725963 + MT2C_Mm LTR ERVL 1 475 0 7 1977 428 240 0 83 chr1 182469507 182469586 -14725846 + B4A SINE B4 1 75 -217 7 1977 1338 245 152 14 chr1 182469586 182469954 -14725478 - MTD LTR MaLR 0 419 1 7 1977 428 240 0 83 chr1 182469954 182469982 -14725450 + B4A SINE B4 76 99 -193 7 1977 1372 63 5 91 chr1 182469982 182470152 -14725280 + B2_Mm1t SINE B2 1 171 -22 7 1977 970 60 0 45 chr1 182470152 182470328 -14725104 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 7 1977 1372 63 5 91 chr1 182470328 182470366 -14725066 + B2_Mm1t SINE B2 172 191 -2 7 1977 526 262 70 47 chr1 182470400 182470572 -14724860 + B3 SINE B2 41 216 0 7 1977 462 339 96 25 chr1 182470578 182470775 -14724657 + B4A SINE B4 82 292 0 7 1977 357 93 0 0 chr1 182470783 182470837 -14724595 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1977 553 307 83 25 chr1 182470849 182471173 -14724259 + L1MC LINE L1 5412 5754 -2128 8 1977 534 157 22 0 chr1 182471186 182471275 -14724157 - MTE2a LTR MaLR -14 365 275 8 1977 240 115 0 129 chr1 182471272 182471342 -14724090 + RCHARR1 DNA MER1_type 424 484 -490 8 1977 325 327 94 91 chr1 182472307 182472616 -14722816 - ORR1D1 LTR MaLR 0 374 65 8 1977 717 227 15 8 chr1 182472862 182472995 -14722437 - RSINE1 SINE B4 -29 136 3 8 1977 619 310 72 72 chr1 182473015 182473307 -14722125 + B4A SINE B4 1 292 0 8 1977 709 203 6 32 chr1 182473419 182473577 -14721855 - RMER1C Other Other -155 1187 1034 8 1977 661 67 11 0 chr1 182473577 182473666 -14721766 + B1_Mur4 SINE Alu 61 150 0 8 1977 314 133 50 0 chr1 182473694 182473754 -14721678 - RMER1C Other Other -303 1039 977 8 1977 1203 48 7 7 chr1 182473785 182473932 -14721500 - B1_Mm SINE Alu 0 147 1 8 1977 1152 183 14 0 chr1 182473942 182474150 -14721282 - B3 SINE B2 -4 212 2 8 1977 1262 278 62 28 chr1 182474291 182474449 -14720983 + MTEa LTR MaLR 5 166 -213 8 1977 1197 43 0 0 chr1 182474449 182474587 -14720845 + B1_Mus1 SINE Alu 1 138 -10 8 1977 180 0 0 0 chr1 182474587 182474607 -14720825 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 1977 1262 278 62 28 chr1 182474607 182474802 -14720630 + MTEa LTR MaLR 167 370 -9 8 1977 1322 200 147 23 chr1 182475236 182475543 -14719889 + ORR1D1 LTR MaLR 30 374 0 8 1977 916 157 13 13 chr1 182475685 182475834 -14719598 + B1_Mur3 SINE Alu 1 149 0 8 1977 561 183 28 0 chr1 182475834 182475976 -14719456 + GA-rich Low_complexity Low_complexity 3 148 0 8 1977 2519 116 75 24 chr1 182476169 182476585 -14718847 + RLTR19 LTR ERVK 5 441 -58 8 1977 1429 171 106 29 chr1 182476573 182476999 -14718433 + RMER17C LTR ERVK 16 431 -527 8 1977 420 171 0 0 chr1 182476986 182477056 -14718376 + RLTR33 LTR ERVK 603 672 -6 8 1977 325 368 63 19 chr1 182477059 182477217 -14718215 - B4A SINE B4 -123 169 5 8 1977 551 291 96 69 chr1 182477350 182477419 -14718013 - MTE2b LTR MaLR 0 379 318 8 1977 706 211 15 0 chr1 182477419 182477552 -14717880 + B1_Mur1 SINE Alu 5 139 -10 8 1977 552 254 256 41 chr1 182477552 182477804 -14717628 - MTE2b LTR MaLR -62 317 2 8 1977 1752 131 113 32 chr1 182479275 182479654 -14715778 + RMER17C LTR ERVK 1 410 0 8 1977 894 155 7 7 chr1 182480488 182480631 -14714801 + B1_Mur4 SINE Alu 1 143 -7 8 1977 1527 48 0 45 chr1 182481557 182481755 -14713677 + B2_Mm1a SINE B2 2 190 -3 8 1977 1209 97 10 56 chr1 182481794 182481990 -14713442 - B2_Mm1a SINE B2 -6 187 1 8 1977 3361 139 38 12 chr1 182482022 182482581 -14712851 + RMER15 LTR ERVL 1 573 -2 8 1977 856 80 0 0 chr1 182483294 182483406 -14712026 + B1_Mus1 SINE Alu 35 146 -2 8 1977 189 0 0 0 chr1 182483672 182483693 -14711739 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 8 1977 1123 56 28 0 chr1 182484424 182484568 -14710864 + B1_Mus1 SINE Alu 1 148 0 8 1977 405 102 0 0 chr1 182484584 182484643 -14710789 + (A)n Simple_repeat Simple_repeat 1 59 0 8 1977 403 176 38 38 chr1 182484652 182484758 -14710674 + MMVL30-int LTR ERV1 949 1054 -2245 8 1977 472 220 83 0 chr1 182485757 182485866 -14709566 - ID_B1 SINE B4 0 224 107 8 1977 235 259 52 129 chr1 182485760 182485915 -14709517 + YREP_Mm Unknown Unknown 181 323 -1489 8 1977 415 168 114 32 chr1 182485916 182486039 -14709393 + L1M LINE L1 5267 5399 -780 8 1977 619 177 17 73 chr1 182486632 182486809 -14708623 + MMVL30-int LTR ERV1 1496 1662 -2036 8 1977 2219 162 33 16 chr1 182486828 182487254 -14708178 + MMVL30-int LTR ERV1 1778 2210 -1488 8 1977 3963 294 77 68 chr1 182487401 182488053 -14707379 + MMVL30-int LTR ERV1 2883 2937 -761 8 1977 3271 51 5 2 chr1 182488053 182488446 -14706986 + MTA_Mm LTR MaLR 2 395 -1 8 1977 216 0 0 0 chr1 182488446 182488470 -14706962 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1977 3963 166 3 42 chr1 182488470 182489146 -14706286 + MMVL30-int LTR ERV1 2938 3604 -94 8 1977 587 168 3 26 chr1 182489614 182489731 -14705701 + ORR1B1 LTR MaLR 299 419 0 8 1977 422 277 43 98 chr1 182489867 182490051 -14705381 - B4A SINE B4 -118 174 1 8 1977 1128 205 20 32 chr1 182490703 182490950 -14704482 - RLTR40 LTR ERVK -6 811 568 8 1977 316 273 7 20 chr1 182490953 182491099 -14704333 + (TG)n Simple_repeat Simple_repeat 1 144 0 8 1977 2586 176 71 72 chr1 182491099 182491778 -14703654 - RLTR40 LTR ERVK -139 678 1 8 1977 225 0 0 0 chr1 182491960 182491985 -14703447 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1977 1146 50 50 0 chr1 182491985 182492125 -14703307 - B1_Mus2 SINE Alu 0 147 1 8 1977 396 60 0 0 chr1 182492455 182492505 -14702927 + B3 SINE B2 1 50 -166 8 1977 1338 82 16 0 chr1 182492495 182492677 -14702755 - B2_Mm2 SINE B2 -8 187 3 8 1977 262 248 60 0 chr1 182492691 182492774 -14702658 - L2c LINE L2 -38 3349 3248 8 1977 527 329 72 99 chr1 182492777 182492860 -14702572 + MLT1A LTR MaLR 5 79 -329 8 1977 780 246 16 53 chr1 182492860 182493049 -14702383 - B3A SINE B2 -16 182 1 8 1977 748 302 53 73 chr1 182493049 182493139 -14702293 + MLT1A LTR MaLR 63 172 -236 8 1977 560 250 170 36 chr1 182493139 182493216 -14702216 + B4A SINE B4 3 83 -209 8 1977 657 0 0 0 chr1 182493216 182493289 -14702143 + (GAA)n Simple_repeat Simple_repeat 3 75 0 8 1977 560 250 170 36 chr1 182493289 182493464 -14701968 + B4A SINE B4 84 289 -3 8 1977 748 297 50 69 chr1 182493464 182493704 -14701728 + MLT1A LTR MaLR 130 374 0 8 1977 1075 124 0 0 chr1 182493843 182493988 -14701444 - B1_Mus2 SINE Alu -1 146 2 8 1977 249 361 0 0 chr1 182495501 182495573 -14699859 - L2a LINE L2 0 3426 3355 8 1977 575 272 32 0 chr1 182495609 182495734 -14699698 + RSINE1 SINE B4 8 136 -29 8 1977 333 0 0 0 chr1 182495737 182495774 -14699658 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1977 360 0 0 0 chr1 182496162 182496202 -14699230 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1977 772 249 30 66 chr1 182496207 182496405 -14699027 + B3 SINE B2 1 191 -25 8 1977 552 298 89 11 chr1 182496701 182496891 -14698541 + B3 SINE B2 1 205 -11 8 1977 492 290 52 22 chr1 182496918 182497052 -14698380 + ID_B1 SINE B4 80 217 -7 8 1977 576 260 93 17 chr1 182497134 182497306 -14698126 - MTE2a LTR MaLR 0 379 195 8 1977 261 0 0 0 chr1 182497418 182497447 -14697985 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1977 1031 47 47 0 chr1 182497449 182497576 -14697856 - B1_Mus2 SINE Alu -13 134 2 8 1977 188 86 29 0 chr1 182497577 182497612 -14697820 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 8 1977 991 221 21 21 chr1 182497627 182497821 -14697611 + B3 SINE B2 6 199 -17 8 1977 450 190 150 0 chr1 182498179 182498279 -14697153 + B1_Mur1 SINE Alu 24 138 -11 8 1977 234 282 84 144 chr1 182498284 182498439 -14696993 - Charlie4a DNA MER1_type -136 372 209 8 1977 853 157 0 7 chr1 182498439 182498574 -14696858 + B1_Mur3 SINE Alu 2 135 -14 8 1977 234 282 84 144 chr1 182498574 182498716 -14696716 - Charlie4a DNA MER1_type -300 208 93 8 1977 532 191 34 25 chr1 182501034 182501152 -14694280 - PB1D9 SINE Alu 0 120 2 1 1977 367 146 0 0 chr1 182501899 182501954 -14693478 - B2_Mm2 SINE B2 -94 101 47 2 1977 1033 81 11 134 chr1 182501987 182502173 -14693259 - B2_Mm1a SINE B2 -15 178 16 3 1977 883 203 92 15 chr1 182502598 182502793 -14692639 - B3 SINE B2 -4 212 3 4 1977 25 51 0 0 chr1 182504089 182504128 -14691304 + AT_rich Low_complexity Low_complexity 1 39 0 5 1977 437 276 74 59 chr1 182504144 182504279 -14691153 - RSINE1 SINE B4 0 165 29 6 1977 2487 100 72 45 chr1 182504344 182504836 -14690596 - RLTR1D LTR ERV1 -16 589 1 7 1977 777 158 0 0 chr1 182504875 182505014 -14690418 + (TGGA)n Simple_repeat Simple_repeat 1 139 0 8 1977 1253 54 0 0 chr1 182505112 182505259 -14690173 - B1_Mus2 SINE Alu 0 147 1 9 1977 366 186 0 14 chr1 182505299 182505370 -14690062 + PB1D9 SINE Alu 50 119 -1 1 1977 230 200 0 22 chr1 182505392 182505438 -14689994 - PB1D10 SINE Alu -72 45 1 1 1977 1547 52 11 0 chr1 182505668 182505859 -14689573 - B2_Mm1t SINE B2 0 193 1 1 1977 720 209 180 6 chr1 182506222 182506405 -14689027 - B3 SINE B2 0 216 2 1 1977 698 232 310 4 chr1 182506713 182506994 -14688438 - ORR1D2 LTR MaLR 0 370 4 1 1977 539 264 180 5 chr1 182507172 182507363 -14688069 + B4A SINE B4 4 228 -64 1 1977 240 281 99 22 chr1 182507363 182507454 -14687978 + B3 SINE B2 1 98 -118 1 1977 769 252 87 37 chr1 182511462 182511784 -14683648 - RLTR15 LTR ERVK -16 343 6 1 1977 742 267 19 29 chr1 182512021 182512229 -14683203 - B3 SINE B2 -9 207 2 1 1977 515 228 0 0 chr1 182512263 182512355 -14683077 + B1F1 SINE Alu 47 138 -11 1 1977 226 430 0 0 chr1 182512546 182512569 -14682863 + B4A SINE B4 64 86 -206 2 1977 341 248 161 9 chr1 182512569 182512686 -14682746 + B1F2 SINE Alu 2 129 -18 2 1977 240 315 65 52 chr1 182512719 182512796 -14682636 + RSINE1 SINE B4 79 156 -9 2 1977 1773 138 132 3 chr1 182513074 182513415 -14682017 + RMER6B LTR ERVK 2 386 -75 2 1977 747 295 86 9 chr1 182514873 182515212 -14680220 - L1MC1 LINE L1 -97 6236 5872 2 1977 657 232 0 0 chr1 182515285 182515397 -14680035 - B1_Mur4 SINE Alu -23 127 16 2 1977 289 250 148 0 chr1 182515613 182515701 -14679731 - RSINE1 SINE B4 -28 137 37 2 1977 531 241 103 0 chr1 182519178 182519294 -14676138 - B1_Mur3 SINE Alu -21 128 1 2 1977 315 200 0 0 chr1 182519372 182519427 -14676005 + ID4 SINE ID 20 74 -9 2 1977 307 305 30 38 chr1 182519427 182519505 -14675927 + ID_B1 SINE B4 20 151 -73 2 1977 652 152 0 33 chr1 182519827 182519949 -14675483 + B1_Mus1 SINE Alu 2 119 -29 3 1977 250 217 33 0 chr1 182520143 182520203 -14675229 + L1M3 LINE L1 3865 3926 -2214 3 1977 228 182 254 0 chr1 182520262 182520317 -14675115 - PB1D10 SINE Alu -32 85 17 3 1977 212 263 35 17 chr1 182520622 182520680 -14674752 - B1F1 SINE Alu -75 74 16 3 1977 443 273 149 0 chr1 182520925 182521046 -14674386 + B1_Mur2 SINE Alu 10 148 -1 3 1977 1164 216 5 0 chr1 182521812 182522025 -14673407 + B3 SINE B2 2 215 -1 3 1977 251 349 110 8 chr1 182522617 182522744 -14672688 - MARNA DNA Mariner -419 167 28 3 1977 1474 78 5 0 chr1 182523288 182523480 -14671952 + B2_Mm1a SINE B2 1 193 0 3 1977 655 165 98 0 chr1 182523766 182523899 -14671533 - B1_Mur1 SINE Alu -1 148 3 3 1977 201 169 186 0 chr1 182525018 182525077 -14670355 + MER5A DNA MER1_type 120 189 0 3 1977 2453 130 38 20 chr1 182525259 182525658 -14669774 - MTB_Mm LTR MaLR 0 407 2 4 1977 1665 183 165 8 chr1 182525906 182526270 -14669162 - MTC LTR MaLR 0 421 1 4 1977 1527 42 37 11 chr1 182526398 182526588 -14668844 - B2_Mm2 SINE B2 0 195 1 4 1977 421 179 266 9 chr1 182527734 182527847 -14667585 - B1_Mur4 SINE Alu -8 142 1 4 1977 475 192 162 0 chr1 182527993 182528092 -14667340 + B1F1 SINE Alu 14 128 -21 4 1977 932 189 55 23 chr1 182531546 182531763 -14663669 - URR1B DNA MER1_type -1 224 1 4 1977 421 206 69 40 chr1 182532382 182532483 -14662949 + PB1D9 SINE Alu 1 104 -16 4 1977 683 74 80 0 chr1 182532591 182532754 -14662678 + CT-rich Low_complexity Low_complexity 1 176 0 4 1977 599 195 23 68 chr1 182532762 182532894 -14662538 - B1_Mus2 SINE Alu -21 126 1 4 1977 1206 165 190 12 chr1 182532898 182533156 -14662276 - ORR1B2 LTR MaLR -63 304 1 4 1977 237 143 0 23 chr1 182533638 182533681 -14661751 + B1F SINE Alu 103 144 -5 5 1977 1420 51 34 0 chr1 182533691 182533869 -14661563 + B2_Mm1a SINE B2 1 184 -9 5 1977 764 249 24 10 chr1 182534193 182534357 -14661075 + B3 SINE B2 6 164 -31 5 1977 572 238 73 169 chr1 182535380 182535653 -14659779 - MTE2a LTR MaLR -8 371 125 5 1977 1524 199 122 0 chr1 182535677 182536014 -14659418 + Lx5 LINE L1 6632 7009 -41 5 1977 650 200 36 36 chr1 182536014 182536180 -14659252 + URR1B DNA MER1_type 57 222 -3 5 1977 314 276 31 54 chr1 182536069 182536199 -14659233 - CYRA11_Mm Unknown Y-chromosome -334 283 157 5 1977 365 219 24 88 chr1 182536355 182536480 -14658952 - RMER15 LTR ERVL -155 420 304 5 1977 292 310 66 54 chr1 182536495 182536662 -14658770 - RMER15 LTR ERVL -406 169 1 5 1977 186 247 127 25 chr1 182537109 182537188 -14658244 - L2a LINE L2 -276 3150 3064 5 1977 1914 177 44 6 chr1 182537663 182538027 -14657405 + ORR1C1 LTR MaLR 1 378 0 5 1977 777 207 186 5 chr1 182538029 182538228 -14657204 + MTD LTR MaLR 184 418 -1 6 1977 340 358 53 7 chr1 182538432 182538584 -14656848 + MIR SINE MIR 35 193 -69 6 1977 825 157 162 0 chr1 182538887 182538934 -14656498 - B3 SINE B2 0 216 158 6 1977 315 0 0 0 chr1 182538934 182538969 -14656463 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 1977 825 157 162 0 chr1 182538969 182539106 -14656326 - B3 SINE B2 -59 157 3 6 1977 230 281 36 24 chr1 182539160 182539244 -14656188 - B1F SINE Alu -16 133 49 6 1977 198 0 0 0 chr1 182539309 182539331 -14656101 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1977 570 230 0 34 chr1 182539346 182539463 -14655969 + B3A SINE B2 1 113 -85 6 1977 1290 14 0 26 chr1 182539499 182539650 -14655782 + B1_Mm SINE Alu 1 147 0 6 1977 318 357 0 0 chr1 182539678 182539762 -14655670 + B1F1 SINE Alu 1 84 -65 6 1977 372 245 128 0 chr1 182539796 182539890 -14655542 + RSINE1 SINE B4 2 107 -58 6 1977 570 29 0 0 chr1 182539894 182539962 -14655470 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1977 180 111 0 0 chr1 182539972 182539999 -14655433 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 7 1977 3186 161 78 9 chr1 182540016 182540593 -14654839 + RMER20B LTR ERVK 10 626 -1 7 1977 369 0 0 0 chr1 182540593 182540634 -14654798 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 7 1977 452 268 10 0 chr1 182540665 182540762 -14654670 + B3A SINE B2 2 99 -99 7 1977 332 275 66 37 chr1 182540820 182540956 -14654476 - L1MCa LINE L1 -4540 1968 1829 7 1977 1251 94 0 22 chr1 182540958 182541143 -14654289 + B2_Mm2 SINE B2 15 195 0 7 1977 315 316 65 60 chr1 182541158 182541326 -14654106 + ID_B1 SINE B4 1 169 -55 7 1977 234 269 85 49 chr1 182541254 182541336 -14654096 + B1F SINE Alu 14 98 -51 7 1977 1031 51 0 62 chr1 182541379 182541525 -14653907 + B1_Mus2 SINE Alu 2 138 -9 7 1977 249 57 0 0 chr1 182541525 182541560 -14653872 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1977 231 36 0 0 chr1 182541644 182541672 -14653760 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1977 545 140 176 42 chr1 182541674 182541793 -14653639 - B1_Mur3 SINE Alu -12 137 3 8 1977 232 280 26 13 chr1 182541805 182541881 -14653551 - ID4_ SINE ID -1 82 6 8 1977 2513 138 41 64 chr1 182542213 182542699 -14652733 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1977 4532 79 5 35 chr1 182542722 182543388 -14652044 + IAPEz-int LTR ERVK 17 662 -5819 8 1977 402 115 0 32 chr1 182543388 182543451 -14651981 + IAPEz-int LTR ERVK 1359 1419 -5062 8 1977 1751 106 0 0 chr1 182543456 182543702 -14651730 + IAPEz-int LTR ERVK 2252 2497 -5183 8 1977 871 96 24 0 chr1 182543697 182543822 -14651610 + IAPEz-int LTR ERVK 4783 4910 -2770 8 1977 20232 20 2 2 chr1 182543824 182546183 -14649249 + IAPEz-int LTR ERVK 4123 6481 0 8 1977 2513 138 41 64 chr1 182546183 182546669 -14648763 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1977 216 97 0 0 chr1 182547027 182547058 -14648374 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1977 759 222 176 9 chr1 182547414 182547641 -14647791 + RMER21B LTR ERV1 303 567 -275 8 1977 233 279 0 32 chr1 182547711 182547774 -14647658 + RMER21B LTR ERV1 775 835 -112 8 1977 261 0 0 0 chr1 182547918 182547947 -14647485 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1977 1124 66 0 0 chr1 182547947 182548083 -14647349 - B1_Mus2 SINE Alu -11 136 1 8 1977 1437 55 16 0 chr1 182548179 182548361 -14647071 - B2_Mm1a SINE B2 -7 186 2 9 1977 589 174 0 20 chr1 182548391 182548484 -14646948 - B3 SINE B2 -5 211 119 9 1977 887 139 7 7 chr1 182548484 182548622 -14646810 + B1_Mur4 SINE Alu 3 140 -10 9 1977 573 290 35 6 chr1 182548867 182549037 -14646395 - MER20 DNA MER1_type -21 198 24 9 1977 379 267 240 0 chr1 182549045 182549195 -14646237 + MLT1F1 LTR MaLR 384 569 0 9 1977 249 264 81 0 chr1 182549195 182549276 -14646156 + Charlie4z DNA MER1_type 77 164 -3 9 1977 746 226 8 0 chr1 182549283 182549416 -14646016 + B1_Mm SINE Alu 2 135 -12 9 1977 231 36 0 0 chr1 182549416 182549444 -14645988 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 9 1977 311 379 21 0 chr1 182549451 182549546 -14645886 + RSINE1 SINE B4 69 165 0 9 1977 462 280 0 0 chr1 182549592 182549767 -14645665 + (CA)n Simple_repeat Simple_repeat 2 176 0 9 1977 237 186 0 23 chr1 182550175 182550219 -14645213 + ID4_ SINE ID 1 43 -40 1 1977 924 263 32 0 chr1 182550236 182550453 -14644979 - ID_B1 SINE B4 0 224 1 1 1977 2277 87 19 0 chr1 182550502 182550814 -14644618 - ORR1A3 LTR MaLR -8 318 1 1 1977 233 148 36 18 chr1 182551063 182551118 -14644314 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 1 1977 589 144 189 0 chr1 182551147 182551258 -14644174 - B1_Mus2 SINE Alu -15 132 1 1 1977 1027 145 201 0 chr1 182551295 182551474 -14643958 + B3 SINE B2 1 215 -1 1 1977 226 333 24 12 chr1 182551672 182551754 -14643678 + MTEb LTR MaLR 279 361 -18 1 1977 340 231 67 104 chr1 182552248 182552412 -14643020 - RSINE1 SINE B4 -4 161 4 1 1977 1106 207 79 28 chr1 182552581 182552894 -14642538 - MTD LTR MaLR 0 419 47 1 1977 645 150 71 55 chr1 182553215 182553342 -14642090 - B1_Mus2 SINE Alu -7 140 12 1 1977 245 242 3 0 chr1 182553677 182553736 -14641696 + BC1_Mm scRNA scRNA 2 61 -22 1 1977 211 293 52 0 chr1 182553809 182553867 -14641565 - B1F1 SINE Alu -77 72 12 1 1977 834 164 13 33 chr1 182553882 182554033 -14641399 - B1_Mur4 SINE Alu 0 150 3 1 1977 409 215 38 0 chr1 182554034 182554113 -14641319 - PB1D10 SINE Alu -1 116 35 1 1977 818 231 50 10 chr1 182554156 182554357 -14641075 - B3 SINE B2 -6 210 2 1 1977 484 247 31 0 chr1 182554420 182554517 -14640915 - B3 SINE B2 -113 103 4 1 1977 1482 53 16 11 chr1 182554521 182554710 -14640722 - B2_Mm2 SINE B2 -5 190 1 1 1977 249 200 0 0 chr1 182554891 182554936 -14640496 - MTD LTR MaLR -327 52 8 1 1977 686 136 131 36 chr1 182555009 182555146 -14640286 + B1_Mur4 SINE Alu 1 150 0 1 1977 261 211 0 0 chr1 182555200 182555257 -14640175 + GA-rich Low_complexity Low_complexity 4 60 0 1 1977 775 207 104 22 chr1 182555312 182555495 -14639937 + B3A SINE B2 1 198 0 1 1977 505 262 98 0 chr1 182555501 182555623 -14639809 + RSINE1 SINE B4 3 136 -29 1 1977 282 116 0 0 chr1 182555631 182555674 -14639758 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 1 1977 1271 41 0 0 chr1 182555740 182555886 -14639546 - B1_Mm SINE Alu 0 147 2 1 1977 299 226 69 88 chr1 182555969 182556071 -14639361 - PB1D10 SINE Alu -17 100 1 1 1977 684 267 47 0 chr1 182556417 182556589 -14638843 - HERV16-int LTR ERVL -3126 1870 1691 1 1977 506 16 0 16 chr1 182556760 182556824 -14638608 + (TAA)n Simple_repeat Simple_repeat 2 64 0 1 1977 588 142 82 36 chr1 182556832 182556942 -14638490 + PB1D9 SINE Alu 3 117 -3 1 1977 468 51 0 0 chr1 182556991 182557050 -14638382 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1977 688 167 15 29 chr1 182557165 182557301 -14638131 - B1_Mur4 SINE Alu -1 149 16 1 1977 294 241 167 0 chr1 182557334 182557442 -14637990 + B1_Mur1 SINE Alu 11 136 -13 1 1977 502 110 0 0 chr1 182557466 182557539 -14637893 + B3 SINE B2 7 79 -137 1 1977 998 191 45 5 chr1 182557611 182557811 -14637621 + B3 SINE B2 1 208 -8 1 1977 297 0 0 0 chr1 182557812 182557845 -14637587 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1977 531 257 0 0 chr1 182558059 182558168 -14637264 + PB1D7 SINE Alu 1 109 -11 1 1977 329 253 0 37 chr1 182558300 182558382 -14637050 - HERV16-int LTR ERVL -4032 964 886 1 1977 357 24 0 0 chr1 182558382 182558424 -14637008 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1977 810 276 117 4 chr1 182558429 182558676 -14636756 - B4 SINE B4 -16 276 2 1 1977 482 273 21 0 chr1 182558700 182558844 -14636588 - L1MA5 LINE L1 -1 6299 6154 1 1977 1584 189 67 17 chr1 182558844 182559200 -14636232 - ORR1D1 LTR MaLR 0 374 1 1 1977 461 288 18 35 chr1 182559200 182559224 -14636208 - L1MA5 LINE L1 -143 6157 6134 1 1977 454 290 75 0 chr1 182559246 182559432 -14636000 - L1MA5 LINE L1 -239 6061 5862 1 1977 180 0 0 0 chr1 182559471 182559491 -14635941 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1977 1985 134 0 12 chr1 182559491 182559823 -14635609 + ORR1A1 LTR MaLR 19 346 0 1 1977 224 250 0 0 chr1 182559823 182559874 -14635558 - B1F SINE Alu -14 135 85 1 1977 475 278 15 8 chr1 182559958 182560092 -14635340 - HERV16-int LTR ERVL -4168 828 694 1 1977 363 239 93 43 chr1 182560447 182560587 -14634845 - B1_Mus2 SINE Alu 0 147 1 1 1977 877 238 67 0 chr1 182560618 182560811 -14634621 - B3 SINE B2 -10 206 1 1 1977 237 276 27 54 chr1 182561907 182562018 -14633414 + PB1D7 SINE Alu 2 109 -11 1 1977 1122 193 16 105 chr1 182562011 182562317 -14633115 + B4 SINE B4 14 292 0 1 1977 191 235 150 20 chr1 182562332 182562432 -14633000 + L2b LINE L2 3034 3146 -229 1 1977 306 237 86 0 chr1 182562769 182562862 -14632570 + MER34 LTR ERV1 371 471 -71 1 1977 791 166 260 0 chr1 182563248 182563417 -14632015 + B3 SINE B2 3 215 -1 1 1977 469 224 60 8 chr1 182563445 182563529 -14631903 + B1_Mus1 SINE Alu 1 90 -58 1 1977 2385 144 13 8 chr1 182563529 182563913 -14631519 + ORR1B1 LTR MaLR 1 386 -8 1 1977 427 98 0 0 chr1 182563917 182563978 -14631454 + B1_Mus2 SINE Alu 79 139 -8 1 1977 216 135 0 0 chr1 182563984 182564021 -14631411 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1977 333 0 0 0 chr1 182564022 182564059 -14631373 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1977 540 250 139 0 chr1 182564061 182564205 -14631227 - RSINE1 SINE B4 0 165 2 1 1977 759 218 0 0 chr1 182564229 182564371 -14631061 - B1_Mus2 SINE Alu 0 147 6 1 1977 497 309 88 94 chr1 182564396 182564725 -14630707 - ORR1E LTR MaLR 0 359 33 1 1977 336 77 0 0 chr1 182565191 182565243 -14630189 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1977 1266 27 0 0 chr1 182565243 182565389 -14630043 - B1_Mm SINE Alu 0 147 2 1 1977 198 224 0 0 chr1 182565483 182565532 -14629900 + CT-rich Low_complexity Low_complexity 2 50 0 1 1977 491 267 20 33 chr1 182565600 182565751 -14629681 - RSINE1 SINE B4 -12 153 5 1 1977 1199 160 28 0 chr1 182566074 182566287 -14629145 + URR1B DNA MER1_type 1 219 -6 1 1977 753 253 80 75 chr1 182566564 182566861 -14628571 - L1MB8 LINE L1 -5 6173 5869 1 1977 1093 22 72 22 chr1 182566861 182567000 -14628432 - B1_Mus2 SINE Alu -1 146 1 1 1977 753 253 80 75 chr1 182567000 182567090 -14628342 - L1MB8 LINE L1 -310 5868 5784 1 1977 512 191 52 52 chr1 182567105 182567221 -14628211 - PB1D9 SINE Alu -2 118 3 1 1977 318 351 67 0 chr1 182567226 182567391 -14628041 - B3A SINE B2 0 198 23 1 1977 291 300 148 16 chr1 182567399 182567521 -14627911 - ID_B1 SINE B4 -5 219 82 1 1977 391 214 48 0 chr1 182567711 182567795 -14627637 - RSINE1 SINE B4 -44 121 34 1 1977 1455 55 22 0 chr1 182567899 182568080 -14627352 - B2_Mm1a SINE B2 -7 186 2 1 1977 364 203 0 75 chr1 182568112 182568187 -14627245 - PB1D9 SINE Alu -15 105 37 1 1977 942 268 64 41 chr1 182568187 182568726 -14626706 - RMER15 LTR ERVL 0 575 38 1 1977 1077 124 6 0 chr1 182568785 182568954 -14626478 + B2_Mm1t SINE B2 1 170 -23 1 1977 695 12 0 12 chr1 182568962 182569047 -14626385 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 1 1977 425 275 188 91 chr1 182569226 182569598 -14625834 + MLT1A1 LTR MaLR 1 408 0 1 1977 28 71 0 0 chr1 182571179 182571235 -14624197 + GC_rich Low_complexity Low_complexity 1 56 0 1 1977 29 101 0 0 chr1 182571306 182571405 -14624027 + GC_rich Low_complexity Low_complexity 1 99 0 1 1977 852 170 0 0 chr1 182572467 182572602 -14622830 + B1_Mus2 SINE Alu 4 138 -9 1 1977 180 0 0 0 chr1 182572602 182572622 -14622810 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1977 252 296 49 39 chr1 182573231 182573333 -14622099 + B1F1 SINE Alu 1 103 -46 1 1977 317 164 49 110 chr1 182573448 182573530 -14621902 + MTEa LTR MaLR 2 78 -301 1 1977 317 297 48 19 chr1 182573530 182573551 -14621881 + MLT2B3 LTR ERVL 2 107 -447 1 1977 208 214 0 0 chr1 182574004 182574046 -14621386 + (CACG)n Simple_repeat Simple_repeat 2 43 0 1 1977 1079 28 14 0 chr1 182574269 182574410 -14621022 - B1_Mus1 SINE Alu 0 148 6 1 1977 419 256 46 15 chr1 182574660 182574791 -14620641 - B1F2 SINE Alu -13 136 2 1 1977 705 266 40 11 chr1 182575091 182575266 -14620166 - B3A SINE B2 -18 180 1 1 1977 250 278 71 91 chr1 182575432 182575531 -14619901 + MTEa LTR MaLR 2 98 -281 1 1977 221 300 175 0 chr1 182576158 182576278 -14619154 + L2a LINE L2 3279 3419 -7 1 1977 303 354 0 30 chr1 182576449 182576580 -14618852 - MIR SINE MIR -113 149 23 1 1977 676 290 43 5 chr1 182576594 182576778 -14618654 - B3A SINE B2 -1 197 7 1 1977 1043 109 7 13 chr1 182577565 182577714 -14617718 - B1_Mus1 SINE Alu 0 148 1 1 1977 589 124 10 10 chr1 182578282 182578380 -14617052 - B1_Mur1 SINE Alu 0 149 52 1 1977 441 150 0 9 chr1 182578677 182578763 -14616669 - B1_Mur1 SINE Alu 0 120 39 1 1977 597 215 54 0 chr1 182579154 182579284 -14616148 - B1F2 SINE Alu -1 148 12 1 1977 361 308 57 78 chr1 182579158 182579299 -14616133 - B4 SINE B4 -73 219 82 1 1977 454 296 56 0 chr1 182579311 182579436 -14615996 - ID_B1 SINE B4 -8 216 85 1 1977 425 222 11 11 chr1 182579692 182579783 -14615649 + B1F SINE Alu 1 91 -58 1 1977 442 244 51 22 chr1 182579875 182580013 -14615419 + B1F1 SINE Alu 1 142 -7 1 1977 186 43 0 0 chr1 182580097 182580120 -14615312 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1977 1030 196 5 41 chr1 182580291 182580509 -14614923 + B3 SINE B2 1 210 -6 1 1977 424 244 30 49 chr1 182580541 182580705 -14614727 - RSINE1 SINE B4 -1 164 4 1 1977 1605 37 11 0 chr1 182581196 182581385 -14614047 - B2_Mm1a SINE B2 -1 192 2 1 1977 540 193 24 48 chr1 182581389 182581514 -14613918 - B1_Mur1 SINE Alu 0 149 28 2 1977 29 0 0 0 chr1 182581962 182581991 -14613441 + AT_rich Low_complexity Low_complexity 1 29 0 2 1977 255 299 15 0 chr1 182582511 182582522 -14612910 - ID SINE ID -142 82 15 1 1977 272 286 0 0 chr1 182582522 182582578 -14612854 - ID4 SINE ID -13 70 15 2 1977 222 37 0 0 chr1 182582602 182582629 -14612803 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1977 632 141 66 66 chr1 182582629 182582766 -14612666 - B1_Mus1 SINE Alu -11 137 1 2 1977 345 216 40 0 chr1 182582769 182582843 -14612589 + RSINE1 SINE B4 47 123 -42 2 1977 387 0 0 0 chr1 182582844 182582887 -14612545 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1977 492 243 46 9 chr1 182583182 182583290 -14612142 - B1F1 SINE Alu -37 112 1 2 1978 859 144 300 0 chr1 182583747 182583907 -14611525 - B3 SINE B2 -8 208 1 2 1978 229 316 13 13 chr1 182584030 182584107 -14611325 - BC1_Mm scRNA scRNA -60 92 16 2 1978 738 282 30 30 chr1 182584167 182584401 -14611031 - MIR SINE MIR -8 254 21 2 1978 237 258 0 0 chr1 182584427 182584493 -14610939 - L1ME1 LINE L1 -7 6172 6107 2 1978 270 268 0 0 chr1 182584494 182584565 -14610867 + ID4 SINE ID 2 72 -11 2 1978 758 189 28 0 chr1 182584934 182585077 -14610355 + B1_Mus2 SINE Alu 1 147 0 2 1978 516 277 25 37 chr1 182585116 182585277 -14610155 + RSINE1 SINE B4 4 162 -3 2 1978 303 316 0 9 chr1 182585347 182585439 -14609993 + PB1D7 SINE Alu 7 94 -55 2 1978 210 205 0 0 chr1 182585444 182585469 -14609963 + polypyrimidine Low_complexity Low_complexity 16 40 0 2 1978 1221 61 0 0 chr1 182585469 182585616 -14609816 - B1_Mm SINE Alu 0 147 1 2 1978 210 205 0 0 chr1 182585616 182585629 -14609803 + polypyrimidine Low_complexity Low_complexity 3 15 0 2 1978 452 289 41 0 chr1 182585876 182585997 -14609435 + B1_Mur1 SINE Alu 7 132 -17 2 1978 828 158 41 24 chr1 182586063 182586232 -14609200 - Lx3C LINE L1 0 6976 6805 2 1978 272 295 147 35 chr1 182586381 182586497 -14608935 + RSINE1 SINE B4 2 130 -35 2 1978 453 266 16 16 chr1 182586569 182586695 -14608737 + B1F SINE Alu 17 142 -7 2 1978 670 167 8 0 chr1 182586808 182586928 -14608504 + B1_Mur2 SINE Alu 2 122 -27 2 1978 667 262 0 0 chr1 182586988 182587133 -14608299 - RSINE1 SINE B4 -7 158 14 2 1978 230 143 82 0 chr1 182587133 182587182 -14608250 - RMER4B LTR ERVK 0 585 533 2 1978 1384 130 95 20 chr1 182587180 182587432 -14608000 - RMER4B LTR ERVK -312 273 3 2 1978 457 229 296 19 chr1 182587499 182587714 -14607718 + B4A SINE B4 1 275 -17 2 1978 1050 54 0 0 chr1 182587852 182587981 -14607451 - B1_Mus1 SINE Alu -18 130 2 2 1978 305 186 57 0 chr1 182588245 182588315 -14607117 - B1F2 SINE Alu -55 94 21 2 1978 21 0 0 0 chr1 182588670 182588691 -14606741 + AT_rich Low_complexity Low_complexity 1 21 0 2 1978 274 277 129 0 chr1 182588704 182588805 -14606627 - RSINE1 SINE B4 -3 162 49 2 1978 1177 48 0 27 chr1 182588994 182589144 -14606288 - B1_Mus1 SINE Alu -1 147 2 2 1978 2648 238 96 5 chr1 182589436 182590069 -14605363 - Lx6 LINE L1 -26 7434 6744 2 1978 619 272 58 12 chr1 182590105 182590276 -14605156 - B3 SINE B2 0 216 38 2 1978 192 77 0 0 chr1 182590294 182590320 -14605112 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1978 353 198 111 86 chr1 182590323 182590467 -14604965 - B1_Mur3 SINE Alu -21 128 6 2 1978 245 305 48 156 chr1 182591365 182591532 -14603900 - B1F SINE Alu 0 149 1 2 1978 304 344 11 0 chr1 182591444 182591534 -14603898 - ID_B1 SINE B4 -54 170 80 2 1978 198 0 0 0 chr1 182591738 182591760 -14603672 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1978 342 0 0 0 chr1 182591813 182591851 -14603581 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1978 640 175 33 16 chr1 182591874 182591996 -14603436 - B1_Mur1 SINE Alu -21 128 5 2 1978 1607 36 16 0 chr1 182592006 182592198 -14603234 - B2_Mm2 SINE B2 0 195 1 2 1978 32 0 0 0 chr1 182592360 182592392 -14603040 + AT_rich Low_complexity Low_complexity 1 32 0 2 1978 180 0 0 0 chr1 182592462 182592482 -14602950 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 2 1978 700 320 0 55 chr1 182592483 182592701 -14602731 - ID_B1 SINE B4 -16 208 3 2 1978 316 260 90 63 chr1 182592781 182592892 -14602540 - RSINE1 SINE B4 -50 115 2 2 1978 624 266 70 13 chr1 182593058 182593214 -14602218 + B3 SINE B2 2 166 -50 2 1978 339 25 0 0 chr1 182593229 182593269 -14602163 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1978 411 263 55 79 chr1 182593291 182593314 -14602118 + RSINE1 SINE B4 4 26 -139 2 1978 3375 41 5 0 chr1 182593314 182593708 -14601724 - MTA_Mm LTR MaLR 0 396 1 2 1978 411 263 55 79 chr1 182593708 182593849 -14601583 + RSINE1 SINE B4 27 164 -1 2 1978 342 261 0 61 chr1 182593997 182594095 -14601337 + B1F SINE Alu 46 137 -12 2 1978 913 182 18 0 chr1 182594236 182594401 -14601031 + B3 SINE B2 1 168 -48 2 1978 948 241 10 0 chr1 182594668 182594867 -14600565 + B3 SINE B2 2 202 -14 2 1978 223 259 148 0 chr1 182595293 182595374 -14600058 - RSINE1 SINE B4 -35 130 38 2 1978 520 189 79 50 chr1 182595467 182595606 -14599826 - B1_Mur2 SINE Alu -6 143 1 2 1978 771 223 72 5 chr1 182596186 182596380 -14599052 + B3 SINE B2 3 209 -7 2 1978 21 0 0 0 chr1 182596384 182596405 -14599027 + AT_rich Low_complexity Low_complexity 1 21 0 2 1978 1309 91 11 0 chr1 182596763 182596939 -14598493 + B2_Mm1t SINE B2 2 179 -14 2 1978 1544 37 27 0 chr1 182597079 182597266 -14598166 + B2_Mm1a SINE B2 2 193 0 2 1978 908 133 0 0 chr1 182598044 182598179 -14597253 - B1_Mus2 SINE Alu -8 139 5 2 1978 195 129 0 0 chr1 182598179 182598210 -14597222 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1978 342 246 87 39 chr1 182598227 182598354 -14597078 - RSINE1 SINE B4 -16 149 17 2 1978 423 0 0 0 chr1 182598672 182598719 -14596713 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 2 1978 213 229 83 0 chr1 182598722 182598770 -14596662 + ID4 SINE ID 4 55 -28 2 1978 719 115 131 0 chr1 182599514 182599644 -14595788 - B1_Mus1 SINE Alu 0 148 2 2 1978 243 0 0 0 chr1 182599849 182599876 -14595556 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1978 795 179 14 7 chr1 182599876 182600017 -14595415 - B1_Mur2 SINE Alu -7 142 1 2 1978 628 145 302 24 chr1 182600166 182600335 -14595097 + B3 SINE B2 1 216 0 2 1978 227 155 17 17 chr1 182600389 182600448 -14594984 + (TATAA)n Simple_repeat Simple_repeat 4 62 0 2 1978 830 169 35 7 chr1 182600471 182600614 -14594818 + B1_Mus1 SINE Alu 1 147 -1 2 1978 2391 203 166 63 chr1 182600639 182601350 -14594082 - Lx9 LINE L1 -6 7638 6855 2 1978 1126 88 0 0 chr1 182601372 182601519 -14593913 - B1_Mus1 SINE Alu 0 148 2 2 1978 198 0 0 0 chr1 182601865 182601887 -14593545 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2 1978 547 270 108 14 chr1 182601891 182602105 -14593327 - L1MC1 LINE L1 -17 6316 6083 2 1978 399 21 0 0 chr1 182602283 182602331 -14593101 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1978 476 268 94 42 chr1 182602658 182602849 -14592583 - L1MC1 LINE L1 -467 5866 5666 2 1978 584 250 98 5 chr1 182602950 182603155 -14592277 - ID_B1 SINE B4 0 224 1 2 1978 644 38 381 0 chr1 182603368 182603473 -14591959 + B1_Mus1 SINE Alu 4 148 0 2 1978 877 130 20 20 chr1 182603569 182603718 -14591714 + B1_Mur4 SINE Alu 2 150 0 2 1978 218 119 24 0 chr1 182603720 182603762 -14591670 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1978 259 289 111 0 chr1 182603766 182603856 -14591576 - RSINE1 SINE B4 -63 102 3 2 1978 415 259 9 0 chr1 182603902 182604010 -14591422 - ID_B1 SINE B4 -8 216 108 2 1978 486 283 20 14 chr1 182604391 182604538 -14590894 - B1F2 SINE Alu -1 148 1 2 1978 250 204 0 0 chr1 182604955 182605004 -14590428 - B2_Mm2 SINE B2 -146 49 1 2 1978 945 81 0 22 chr1 182605031 182605170 -14590262 + B1_Mus1 SINE Alu 13 148 0 2 1978 319 273 55 96 chr1 182605039 182605185 -14590247 + B4A SINE B4 105 244 -48 2 1978 1102 111 33 6 chr1 182605211 182605392 -14590040 + B2_Mm2 SINE B2 6 191 -4 2 1978 469 198 0 0 chr1 182605403 182605489 -14589943 - B1_Mur4 SINE Alu -58 92 7 2 1978 186 43 0 0 chr1 182605612 182605635 -14589797 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 2 1978 591 112 243 0 chr1 182605951 182606058 -14589374 + B1_Mus1 SINE Alu 1 133 -15 2 1978 200 209 23 0 chr1 182606308 182606351 -14589081 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1978 506 248 216 42 chr1 182606369 182606605 -14588827 - B4A SINE B4 -15 277 1 2 1978 1582 57 0 5 chr1 182606638 182606831 -14588601 - B2_Mm2 SINE B2 -3 192 1 2 1978 1374 109 16 0 chr1 182606979 182607171 -14588261 + B2_Mm2 SINE B2 1 195 0 2 1978 364 296 34 0 chr1 182607186 182607274 -14588158 + B1F2 SINE Alu 1 91 -58 2 1978 320 323 89 0 chr1 182607634 182607758 -14587674 + B1F2 SINE Alu 9 143 -6 2 1978 1004 61 46 0 chr1 182607767 182607898 -14587534 + B1_Mus1 SINE Alu 2 138 -10 2 1978 415 286 41 98 chr1 182608089 182608107 -14587325 - B4 SINE B4 -50 242 175 2 1978 870 161 0 0 chr1 182608107 182608256 -14587176 - B1_Mur4 SINE Alu -1 149 1 2 1978 415 286 41 98 chr1 182608256 182608283 -14587149 - B4 SINE B4 -50 174 60 2 1978 292 278 59 73 chr1 182608420 182608556 -14586876 - L1ME2 LINE L1 -179 5985 5852 2 1978 448 257 49 0 chr1 182608653 182608791 -14586641 - L1ME2 LINE L1 -379 5799 5650 2 1978 316 204 30 0 chr1 182608947 182609025 -14586407 + B1_Mur1 SINE Alu 44 123 -26 2 1978 234 227 60 30 chr1 182609025 182609047 -14586385 + MT2B LTR ERVL 201 303 -298 3 1978 224 191 0 0 chr1 182609261 182609303 -14586129 + B1_Mur1 SINE Alu 70 111 -38 3 1978 210 191 0 0 chr1 182609319 182609361 -14586071 + B1_Mur1 SINE Alu 70 111 -38 3 1978 224 191 0 0 chr1 182609406 182609448 -14585984 + B1_Mur1 SINE Alu 70 111 -38 3 1978 361 208 0 38 chr1 182609493 182609573 -14585859 + B1_Mur1 SINE Alu 70 146 -3 3 1978 1037 59 73 0 chr1 182609580 182609716 -14585716 + B1_Mus2 SINE Alu 2 147 0 3 1978 285 261 32 21 chr1 182609973 182610067 -14585365 + B3 SINE B2 119 213 -3 3 1978 452 248 118 9 chr1 182610234 182610506 -14584926 - ORR1D2 LTR MaLR -16 354 2 3 1978 973 174 230 0 chr1 182610513 182610783 -14584649 - ORR1D2-int LTR MaLR -5 1365 1034 3 1978 520 293 73 42 chr1 182610836 182611028 -14584404 + B3A SINE B2 1 198 0 3 1978 216 0 0 0 chr1 182611383 182611407 -14584025 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 3 1978 717 135 111 15 chr1 182611408 182611543 -14583889 - B1_Mur2 SINE Alu 0 149 2 3 1978 503 304 179 13 chr1 182611877 182612106 -14583326 - B4A SINE B4 -25 267 1 3 1978 369 231 98 71 chr1 182612109 182612221 -14583211 - PB1D10 SINE Alu -1 116 2 3 1978 2674 142 132 86 chr1 182612244 182613072 -14582360 + RMER6C LTR ERVK 1 720 0 3 1978 560 269 119 5 chr1 182613123 182613317 -14582115 - B3 SINE B2 0 216 1 3 1978 796 258 50 0 chr1 182613321 182613503 -14581929 - B3 SINE B2 -6 210 20 3 1978 1132 70 21 0 chr1 182613777 182613920 -14581512 - B1_Mus1 SINE Alu 0 148 3 3 1978 247 333 0 24 chr1 182614091 182614174 -14581258 - ID4 SINE ID -2 81 1 3 1978 332 297 36 0 chr1 182614174 182614285 -14581147 - PB1D10 SINE Alu -2 115 1 3 1978 480 218 0 0 chr1 182614668 182614755 -14580677 + B3 SINE B2 1 87 -129 3 1978 1385 85 27 0 chr1 182614862 182615050 -14580382 + B2_Mm2 SINE B2 1 193 -2 3 1978 210 143 0 0 chr1 182615053 182615088 -14580344 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1978 1048 190 66 5 chr1 182615093 182615289 -14580143 + B3 SINE B2 2 209 -7 3 1978 454 257 181 14 chr1 182615393 182615531 -14579901 - RSINE1 SINE B4 -2 163 3 3 1978 257 140 14 174 chr1 182615632 182615701 -14579731 + PB1 SINE Alu 66 123 -4 3 1978 294 214 114 0 chr1 182615922 182615992 -14579440 + ID4 SINE ID 3 80 -3 3 1978 222 231 0 0 chr1 182616285 182616350 -14579082 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1978 379 272 360 7 chr1 182616507 182616796 -14578636 + L1MC4 LINE L1 6416 6806 -1076 3 1978 1044 16 0 38 chr1 182616806 182616939 -14578493 + B1_Mus1 SINE Alu 21 148 0 3 1978 1027 259 19 65 chr1 182617164 182617424 -14578008 + B4A SINE B4 2 249 -43 3 1978 868 198 30 40 chr1 182617426 182617626 -14577806 + B3A SINE B2 1 198 0 3 1978 625 271 90 24 chr1 182617645 182617933 -14577499 + L1MC4 LINE L1 7170 7476 -566 3 1978 775 121 97 0 chr1 182618819 182618943 -14576489 - B1_Mur4 SINE Alu -14 136 1 3 1978 243 0 0 0 chr1 182618999 182619026 -14576406 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1978 360 321 36 27 chr1 182619057 182619169 -14576263 + RSINE1 SINE B4 45 157 -8 3 1978 413 314 15 16 chr1 182619191 182619325 -14576107 + RSINE1 SINE B4 15 148 -17 3 1978 35 24 0 0 chr1 182620074 182620116 -14575316 + AT_rich Low_complexity Low_complexity 1 42 0 3 1978 24 53 0 0 chr1 182620477 182620515 -14574917 + AT_rich Low_complexity Low_complexity 1 38 0 3 1978 389 222 90 27 chr1 182621002 182621113 -14574319 + PB1D9 SINE Alu 3 120 0 3 1978 298 298 83 68 chr1 182621822 182621839 -14573593 + ID_B1 SINE B4 87 220 -3 3 1978 375 289 122 9 chr1 182621839 182621954 -14573478 + B1F SINE Alu 22 149 0 3 1978 735 173 68 0 chr1 182621971 182622104 -14573328 + B1_Mur4 SINE Alu 2 143 -7 3 1978 1111 68 0 51 chr1 182622115 182622271 -14573161 + B1_Mus1 SINE Alu 1 148 0 3 1978 888 218 67 0 chr1 182622357 182622550 -14572882 - B3 SINE B2 -10 206 1 3 1978 1218 201 148 31 chr1 182622830 182623154 -14572278 + ORR1D1 LTR MaLR 5 366 -8 3 1978 688 272 6 12 chr1 182623201 182623365 -14572067 - RSINE1 SINE B4 0 165 3 3 1978 434 239 167 0 chr1 182623943 182624123 -14571309 + L1MA8 LINE L1 5997 6206 -85 3 1978 247 287 52 65 chr1 182625100 182625253 -14570179 + YREP_Mm Unknown Unknown 156 306 -1506 3 1978 918 199 39 34 chr1 182625125 182625333 -14570099 - ID_B1 SINE B4 -5 219 11 3 1978 276 95 0 0 chr1 182625512 182625534 -14569898 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1978 1332 7 0 0 chr1 182625534 182625681 -14569751 + B1_Mm SINE Alu 1 147 0 3 1978 276 95 0 0 chr1 182625681 182625700 -14569732 + (A)n Simple_repeat Simple_repeat 1 19 0 3 1978 213 216 0 0 chr1 182625709 182625746 -14569686 + B1_Mur4 SINE Alu 1 37 -113 3 1978 599 197 87 0 chr1 182625858 182625985 -14569447 + B1_Mus1 SINE Alu 1 138 -10 3 1978 518 245 0 0 chr1 182626073 182626179 -14569253 + PB1D10 SINE Alu 1 106 -11 3 1978 450 0 0 0 chr1 182626181 182626231 -14569201 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1978 522 31 0 0 chr1 182626231 182626294 -14569138 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1978 321 93 0 0 chr1 182626453 182626507 -14568925 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1978 304 258 85 108 chr1 182628325 182628496 -14566936 - B3A SINE B2 -18 198 32 3 1978 414 0 0 0 chr1 182628670 182628716 -14566716 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1978 482 261 143 11 chr1 182628848 182629030 -14566402 - ID_B1 SINE B4 -16 208 3 3 1978 382 206 0 0 chr1 182629047 182629115 -14566317 - PB1D10 SINE Alu -12 105 38 3 1978 330 349 8 16 chr1 182629057 182629185 -14566247 - ID_B1 SINE B4 -48 176 50 3 1978 420 30 30 15 chr1 182629303 182629370 -14566062 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1978 435 38 0 0 chr1 182630056 182630109 -14565323 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1978 502 286 25 0 chr1 182630136 182630255 -14565177 - RSINE1 SINE B4 -43 122 1 3 1978 723 190 13 47 chr1 182630350 182630499 -14564933 + B1_Mur2 SINE Alu 1 144 -5 3 1978 514 279 57 7 chr1 182630583 182630724 -14564708 + B1F1 SINE Alu 1 148 -1 3 1978 1263 41 0 0 chr1 182630725 182630872 -14564560 + B1_Mus1 SINE Alu 1 147 -1 3 1978 384 119 0 0 chr1 182631160 182631219 -14564213 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1978 23 43 0 21 chr1 182631219 182631232 -14564200 + AT_rich Low_complexity Low_complexity 1 13 0 3 1978 780 169 85 0 chr1 182631232 182631362 -14564070 - B1_Mur2 SINE Alu -5 144 4 3 1978 23 43 0 21 chr1 182631362 182631396 -14564036 + AT_rich Low_complexity Low_complexity 1 34 0 3 1978 193 29 0 56 chr1 182631396 182631432 -14564000 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 1978 981 90 90 0 chr1 182631432 182631566 -14563866 - B1_Mm SINE Alu 0 147 2 3 1978 24 0 0 0 chr1 182631588 182631612 -14563820 + AT_rich Low_complexity Low_complexity 1 24 0 3 1978 346 340 56 122 chr1 182631741 182631955 -14563477 + B4A SINE B4 39 238 -54 3 1978 1466 73 10 5 chr1 182631978 182632171 -14563261 - B2_Mm2 SINE B2 0 195 2 3 1978 24 0 0 0 chr1 182632293 182632317 -14563115 + AT_rich Low_complexity Low_complexity 1 24 0 3 1978 765 177 85 0 chr1 182632348 182632478 -14562954 + B1_Mur2 SINE Alu 4 144 -5 3 1978 306 0 0 0 chr1 182632495 182632529 -14562903 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1978 280 282 35 23 chr1 182633859 182633946 -14561486 + L1MC4 LINE L1 6767 6854 -1188 3 1978 269 209 0 0 chr1 182634085 182634128 -14561304 + RSINE1 SINE B4 87 129 -36 3 1978 456 19 0 0 chr1 182634137 182634190 -14561242 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1978 387 0 0 0 chr1 182634190 182634232 -14561200 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1978 290 138 17 0 chr1 182634313 182634371 -14561061 + GA-rich Low_complexity Low_complexity 2 60 0 3 1978 258 239 15 15 chr1 182634372 182634440 -14560992 + ID4 SINE ID 2 69 -14 3 1978 441 0 0 0 chr1 182635062 182635111 -14560321 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1978 261 0 0 0 chr1 182635111 182635139 -14560293 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1978 409 328 0 30 chr1 182635139 182635274 -14560158 - RSINE1 SINE B4 -32 133 3 3 1978 256 312 71 27 chr1 182635276 182635388 -14560044 - PB1D10 SINE Alu 0 117 1 3 1978 478 195 0 0 chr1 182635447 182635529 -14559903 - ID4_ SINE ID -1 82 1 3 1978 715 137 15 68 chr1 182635671 182635804 -14559628 + B1_Mus1 SINE Alu 23 148 0 3 1978 202 311 40 13 chr1 182636624 182636699 -14558733 + L2b LINE L2 3276 3352 -23 3 1978 225 0 0 0 chr1 182637982 182638007 -14557425 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1978 396 104 0 0 chr1 182638008 182638075 -14557357 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 3 1978 297 289 76 98 chr1 182638184 182638368 -14557064 + B4 SINE B4 2 181 -111 3 1978 230 277 0 0 chr1 182638377 182638424 -14557008 + RSINE1 SINE B4 98 144 -21 3 1978 324 330 18 18 chr1 182638413 182638524 -14556908 + PB1 SINE Alu 8 118 -9 3 1978 966 127 56 0 chr1 182638525 182638667 -14556765 + B1_Mur4 SINE Alu 1 150 0 3 1978 201 74 0 0 chr1 182639554 182639581 -14555851 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 3 1978 419 298 32 38 chr1 182639831 182639988 -14555444 - RSINE1 SINE B4 0 165 10 4 1978 410 271 66 90 chr1 182640004 182640215 -14555217 - L1MB5 LINE L1 -40 6134 5928 4 1978 199 348 13 89 chr1 182640228 182640387 -14555045 - MIRb SINE MIR -113 155 2 4 1978 393 22 0 0 chr1 182640401 182640447 -14554985 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1978 482 252 39 8 chr1 182640459 182640587 -14554845 + MER31A LTR ERV1 28 159 -326 4 1978 240 315 66 22 chr1 182640626 182640717 -14554715 + MLT1A1 LTR MaLR 36 130 -278 4 1978 612 103 10 5 chr1 182640865 182640980 -14554452 - L1_Mus1 LINE L1 -1 6581 6465 4 1978 538 289 89 25 chr1 182641142 182641344 -14554088 + MER31A LTR ERV1 161 375 -110 4 1978 607 187 7 113 chr1 182641397 182641548 -14553884 - B1_Mur4 SINE Alu -15 135 1 4 1978 466 258 204 19 chr1 182641868 182642030 -14553402 + B3A SINE B2 1 192 -6 4 1978 434 274 0 33 chr1 182642083 182642204 -14553228 + PB1D10 SINE Alu 1 117 0 4 1978 1124 56 14 0 chr1 182642303 182642446 -14552986 - B1_Mus1 SINE Alu 0 148 4 4 1978 359 284 28 21 chr1 182642465 182642609 -14552823 - B1F SINE Alu 0 149 5 4 1978 270 0 0 0 chr1 182642694 182642724 -14552708 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1978 521 183 87 0 chr1 182642724 182642828 -14552604 - B1_Mur4 SINE Alu -12 138 26 4 1978 280 284 0 74 chr1 182642745 182642840 -14552592 - MT2B LTR ERVL -337 264 177 4 1978 264 233 58 173 chr1 182642942 182643046 -14552386 - B1F2 SINE Alu -56 93 2 4 1978 811 216 96 46 chr1 182643104 182643322 -14552110 - B4A SINE B4 -59 233 5 4 1978 862 122 234 17 chr1 182643406 182643581 -14551851 + B3 SINE B2 2 214 -2 4 1978 28 0 0 0 chr1 182643581 182643609 -14551823 + AT_rich Low_complexity Low_complexity 1 28 0 4 1978 412 254 26 9 chr1 182643690 182643805 -14551627 + PB1 SINE Alu 1 117 -10 4 1978 465 205 0 0 chr1 182643815 182643927 -14551505 + GA-rich Low_complexity Low_complexity 3 114 0 4 1978 475 224 129 36 chr1 182643987 182644126 -14551306 + ID_B1 SINE B4 3 154 -70 4 1978 338 100 17 0 chr1 182644784 182644844 -14550588 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1978 754 167 8 8 chr1 182644844 182644971 -14550461 - B1_Mus1 SINE Alu -21 127 1 4 1978 388 236 76 95 chr1 182644971 182645037 -14550395 - MT2B LTR ERVL -427 157 95 4 1978 230 187 48 96 chr1 182645069 182645152 -14550280 + ID4 SINE ID 2 80 -3 4 1978 472 202 149 0 chr1 182645556 182645670 -14549762 + B1_Mur2 SINE Alu 2 132 -17 4 1978 396 0 0 0 chr1 182645670 182645714 -14549718 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1978 351 0 0 0 chr1 182645714 182645752 -14549680 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1978 1182 106 0 0 chr1 182645887 182646166 -14549266 + (TTTC)n Simple_repeat Simple_repeat 1 279 0 4 1978 343 309 0 0 chr1 182646167 182646248 -14549184 - PB1D7 SINE Alu -14 106 26 4 1978 188 294 39 0 chr1 182646591 182646642 -14548790 - MIRm SINE MIR 0 276 224 4 1978 624 226 30 0 chr1 182646684 182646817 -14548615 + B1F SINE Alu 1 137 -12 4 1978 203 355 0 0 chr1 182646844 182646906 -14548526 + GA-rich Low_complexity Low_complexity 2 63 0 4 1978 302 363 0 11 chr1 182646953 182647045 -14548387 + ID_B1 SINE B4 104 194 -30 4 1978 276 261 0 55 chr1 182647031 182647104 -14548328 + ID4 SINE ID 15 83 0 4 1978 1352 110 5 0 chr1 182647162 182647353 -14548079 + B2_Mm1t SINE B2 1 192 -1 4 1978 23 0 0 0 chr1 182647537 182647560 -14547872 + AT_rich Low_complexity Low_complexity 1 23 0 4 1978 497 335 26 0 chr1 182647560 182647715 -14547717 - RSINE1 SINE B4 -5 160 2 4 1978 26 64 0 0 chr1 182647725 182647772 -14547660 + AT_rich Low_complexity Low_complexity 1 47 0 4 1978 575 180 16 2 chr1 182647777 182647888 -14547544 + B1_Mur4 SINE Alu 1 120 0 4 1978 1417 84 5 16 chr1 182647891 182648085 -14547347 + B2_Mm2 SINE B2 2 193 -2 4 1978 664 235 145 0 chr1 182648247 182648426 -14547006 + B3 SINE B2 7 211 -5 4 1978 575 231 0 123 chr1 182648484 182648647 -14546785 - B1_Mur1 SINE Alu -5 144 2 4 1978 317 275 84 30 chr1 182648830 182649051 -14546381 - MIRb SINE MIR -29 233 17 4 1978 564 216 7 118 chr1 182649128 182649280 -14546152 - ID_B1 SINE B4 -1 223 89 4 1978 218 351 0 0 chr1 182649304 182649361 -14546071 + B4A SINE B4 27 83 -209 4 1978 1393 69 21 21 chr1 182649388 182649580 -14545852 - B2_Mm2 SINE B2 -2 193 2 4 1978 598 163 45 90 chr1 182649977 182650132 -14545300 + B1_Mur1 SINE Alu 2 149 0 4 1978 479 276 79 89 chr1 182650139 182650342 -14545090 + B4A SINE B4 92 292 0 4 1978 444 37 0 0 chr1 182650354 182650408 -14545024 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1978 181 180 20 20 chr1 182650743 182650794 -14544638 + CT-rich Low_complexity Low_complexity 3 53 0 4 1978 806 159 8 0 chr1 182650813 182650945 -14544487 - B1_Mur1 SINE Alu -2 147 15 4 1978 240 266 106 99 chr1 182650993 182651009 -14544423 - ID_B1 SINE B4 -81 143 1 4 1978 983 79 0 0 chr1 182651009 182651135 -14544297 - B3 SINE B2 -90 126 1 4 1978 749 226 36 57 chr1 182651172 182651364 -14544068 + B3A SINE B2 5 192 -6 4 1978 554 278 0 9 chr1 182651389 182651505 -14543927 + PB1 SINE Alu 1 115 -12 4 1978 521 246 84 28 chr1 182651542 182651684 -14543748 + RSINE1 SINE B4 3 152 -13 4 1978 277 243 0 0 chr1 182652227 182652297 -14543135 + A-rich Low_complexity Low_complexity 1 70 0 4 1978 1126 79 0 0 chr1 182652301 182652441 -14542991 + B1_Mus2 SINE Alu 2 141 -6 4 1978 546 143 0 0 chr1 182652441 182652532 -14542900 + (GAAA)n Simple_repeat Simple_repeat 1 91 0 4 1978 615 27 0 0 chr1 182652611 182652684 -14542748 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 4 1978 518 243 51 14 chr1 182652699 182652837 -14542595 + B1F1 SINE Alu 6 148 -1 4 1978 245 122 0 58 chr1 182653073 182653125 -14542307 + GA-rich Low_complexity Low_complexity 1 49 0 4 1978 355 230 58 0 chr1 182653127 182653214 -14542218 - ID_B1 SINE B4 -29 195 104 4 1978 239 333 74 0 chr1 182653214 182653235 -14542197 - B1F SINE Alu -32 117 2 4 1978 699 333 69 33 chr1 182653296 182653469 -14541963 + MLT1A0 LTR MaLR 49 233 -132 4 1978 3071 135 74 15 chr1 182653469 182654012 -14541420 - RMER15 LTR ERVL 0 575 1 4 1978 699 333 69 33 chr1 182654012 182654142 -14541290 + MLT1A0 LTR MaLR 234 363 -2 4 1978 432 0 0 0 chr1 182654553 182654601 -14540831 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 4 1978 774 167 38 0 chr1 182654601 182654733 -14540699 - B1_Mus1 SINE Alu -11 137 1 4 1978 580 159 41 66 chr1 182655297 182655418 -14540014 + B1_Mur2 SINE Alu 32 149 0 4 1978 451 276 95 0 chr1 182655565 182655681 -14539751 + B1F SINE Alu 2 128 -21 4 1978 333 0 0 0 chr1 182657118 182657155 -14538277 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1978 628 228 36 52 chr1 182657841 182658035 -14537397 - B3A SINE B2 -3 195 5 4 1978 357 286 19 75 chr1 182658137 182658296 -14537136 + B4A SINE B4 70 219 -73 4 1978 708 161 53 8 chr1 182658170 182658301 -14537131 + B1_Mur2 SINE Alu 10 146 -3 4 1978 24 53 0 0 chr1 182658482 182658520 -14536912 + AT_rich Low_complexity Low_complexity 1 38 0 4 1978 225 0 0 0 chr1 182659030 182659055 -14536377 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1978 298 164 0 35 chr1 182659079 182659136 -14536296 - B2_Mm2 SINE B2 -94 101 47 4 1978 942 87 193 0 chr1 182659164 182659314 -14536118 - B2_Mm1t SINE B2 -14 179 1 4 1978 554 272 108 27 chr1 182659443 182659628 -14535804 + ID_B1 SINE B4 4 203 -21 4 1978 1102 222 14 0 chr1 182660780 182660987 -14534445 - B3 SINE B2 -5 211 2 4 1978 367 183 63 63 chr1 182661158 182661269 -14534163 - PB1D9 SINE Alu -9 111 1 4 1978 378 187 296 9 chr1 182661359 182661467 -14533965 - RSINE1 SINE B4 -22 143 5 4 1978 544 299 80 0 chr1 182661654 182661791 -14533641 - B1F1 SINE Alu -1 148 1 4 1978 1077 71 7 0 chr1 182661816 182661957 -14533475 - B1_Mus2 SINE Alu 0 147 6 4 1978 1169 44 209 18 chr1 182661962 182662125 -14533307 - B2_Mm2 SINE B2 0 195 2 4 1978 366 231 154 0 chr1 182662501 182662592 -14532840 + B1_Mur1 SINE Alu 44 148 -1 4 1978 23 68 0 0 chr1 182662609 182662653 -14532779 + AT_rich Low_complexity Low_complexity 1 44 0 4 1978 353 262 72 58 chr1 182662765 182662903 -14532529 + B1F SINE Alu 5 144 -5 4 1978 1054 66 7 0 chr1 182663031 182663167 -14532265 - B1_Mus2 SINE Alu -10 137 1 4 1978 24 0 0 0 chr1 182663654 182663678 -14531754 + AT_rich Low_complexity Low_complexity 1 24 0 4 1978 376 142 0 5 chr1 182663699 182663764 -14531668 - B2_Mm2 SINE B2 -107 109 47 4 1978 1319 96 11 0 chr1 182663777 182663954 -14531478 - B2_Mm1t SINE B2 -14 179 1 4 1978 765 192 186 6 chr1 182663983 182664166 -14531266 + B3 SINE B2 1 216 0 4 1978 263 219 289 12 chr1 182664886 182664969 -14530463 - PB1D10 SINE Alu -11 106 1 4 1978 796 204 26 13 chr1 182665127 182665281 -14530151 + B3 SINE B2 58 213 -3 4 1978 513 252 86 8 chr1 182665335 182665463 -14529969 + B1F2 SINE Alu 11 148 -1 4 1978 207 0 0 0 chr1 182665526 182665549 -14529883 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1978 1113 52 15 0 chr1 182665549 182665684 -14529748 - B1_Mur4 SINE Alu -9 141 5 4 1978 881 218 43 5 chr1 182665700 182665907 -14529525 - B3 SINE B2 -1 215 1 4 1978 252 247 70 70 chr1 182665951 182666051 -14529381 - B3 SINE B2 -13 203 104 4 1978 735 152 49 35 chr1 182666252 182666395 -14529037 - B1_Mur3 SINE Alu 0 149 5 5 1978 222 272 58 58 chr1 182666403 182666489 -14528943 + MIRm SINE MIR 172 257 -19 5 1978 240 323 8 30 chr1 182666824 182666958 -14528474 + GA-rich Low_complexity Low_complexity 3 133 0 5 1978 22 0 0 0 chr1 182667819 182667841 -14527591 + AT_rich Low_complexity Low_complexity 1 22 0 5 1978 308 271 198 12 chr1 182667943 182668029 -14527403 + PB1D10 SINE Alu 1 102 -15 5 1978 287 345 325 0 chr1 182668249 182668418 -14527014 + MIR SINE MIR 38 261 -1 5 1978 1188 68 0 0 chr1 182668944 182669090 -14526342 + B1_Mus2 SINE Alu 1 146 -1 5 1978 186 281 94 0 chr1 182669475 182669539 -14525893 + MIR3 SINE MIR 6 75 -133 5 1978 765 46 266 0 chr1 182669695 182669804 -14525628 + B1_Mm SINE Alu 1 138 -9 5 1978 186 200 0 0 chr1 182670685 182670706 -14524726 + T-rich Low_complexity Low_complexity 30 50 0 5 1978 1332 75 36 46 chr1 182670706 182670902 -14524530 - B2_Mm2 SINE B2 0 195 2 5 1978 186 200 0 0 chr1 182670902 182670930 -14524502 + T-rich Low_complexity Low_complexity 2 29 0 5 1978 312 48 0 0 chr1 182670933 182670975 -14524457 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1978 296 193 0 5 chr1 182670983 182671048 -14524384 - B2_Mm2 SINE B2 -107 109 47 5 1978 1313 96 11 0 chr1 182671080 182671257 -14524175 - B2_Mm1t SINE B2 -14 179 1 5 1978 257 292 257 0 chr1 182671285 182671398 -14524034 - B1F SINE Alu -2 147 6 5 1978 225 362 0 0 chr1 182671353 182671411 -14524021 - B4 SINE B4 -157 135 78 5 1978 390 185 58 40 chr1 182671711 182671803 -14523629 + B1_Mur1 SINE Alu 24 136 -13 5 1978 940 241 49 79 chr1 182671807 182672073 -14523359 - MTE2a LTR MaLR -114 265 8 5 1978 1040 231 19 9 chr1 182672132 182672346 -14523086 - B3 SINE B2 0 216 1 5 1978 419 248 0 0 chr1 182672373 182672474 -14522958 - RCHARR1 DNA MER1_type -575 399 299 5 1978 1118 165 11 0 chr1 182672479 182672655 -14522777 + B2_Mm1t SINE B2 2 179 -14 5 1978 297 199 0 5 chr1 182672687 182672752 -14522680 + B2_Mm2 SINE B2 47 109 -107 5 1978 27 0 0 0 chr1 182672764 182672791 -14522641 + AT_rich Low_complexity Low_complexity 1 27 0 5 1978 909 281 46 59 chr1 182672791 182673094 -14522338 - RCHARR1 DNA MER1_type -673 301 3 5 1978 987 24 16 8 chr1 182673104 182673230 -14522202 + B1_Mus2 SINE Alu 21 147 0 5 1978 346 250 129 10 chr1 182673303 182673404 -14522028 - PB1 SINE Alu -2 125 13 5 1978 325 277 43 8 chr1 182673416 182673536 -14521896 - B1F2 SINE Alu -19 128 7 5 1978 781 215 0 20 chr1 182673609 182673761 -14521671 - B1_Mur4 SINE Alu 0 150 2 5 1978 180 111 0 0 chr1 182673861 182673888 -14521544 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 5 1978 185 59 59 0 chr1 182673942 182673976 -14521456 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 5 1978 1226 74 0 0 chr1 182673976 182674124 -14521308 - B1_Mus1 SINE Alu 0 148 1 5 1978 1172 88 59 0 chr1 182674224 182674394 -14521038 - B2_Mm2 SINE B2 -14 181 2 5 1978 26 30 0 0 chr1 182674394 182674427 -14521005 + AT_rich Low_complexity Low_complexity 1 33 0 5 1978 332 279 93 0 chr1 182674722 182674851 -14520581 - B1_Mur4 SINE Alu -9 141 1 5 1978 493 231 65 0 chr1 182675565 182675673 -14519759 + ID_B1 SINE B4 3 117 -107 5 1978 555 277 25 0 chr1 182675964 182676083 -14519349 - RSINE1 SINE B4 -39 126 5 5 1978 197 211 19 0 chr1 182676096 182676148 -14519284 + CT-rich Low_complexity Low_complexity 3 55 0 5 1978 531 161 42 67 chr1 182676160 182676280 -14519152 - PB1D9 SINE Alu 0 120 4 5 1978 229 254 0 48 chr1 182676287 182676300 -14519132 - B1F SINE Alu -20 129 71 5 1978 299 184 0 0 chr1 182676300 182676349 -14519083 - ID_B1 SINE B4 -27 197 149 5 1978 303 276 13 0 chr1 182676363 182676439 -14518993 - ID4_ SINE ID -2 81 5 5 1978 875 83 0 0 chr1 182677383 182677503 -14517929 - B1_Mus2 SINE Alu 0 147 28 5 1978 639 263 29 0 chr1 182677868 182678005 -14517427 + B1F SINE Alu 2 142 -7 5 1978 540 254 117 56 chr1 182678016 182678212 -14517220 + B3 SINE B2 2 209 -7 5 1978 1223 54 0 20 chr1 182678317 182678467 -14516965 - B1_Mus1 SINE Alu 0 148 2 5 1978 1360 81 6 0 chr1 182678468 182678641 -14516791 - B2_Mm1t SINE B2 -18 175 2 5 1978 1302 95 6 11 chr1 182678641 182678659 -14516773 - B2_Mm2 SINE B2 -15 180 163 5 1978 180 0 0 0 chr1 182678659 182678679 -14516753 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1978 1302 95 6 11 chr1 182678679 182678841 -14516591 - B2_Mm2 SINE B2 -33 162 1 5 1978 554 275 99 8 chr1 182678944 182679142 -14516290 + B3A SINE B2 2 214 -2 5 1978 696 143 12 36 chr1 182679258 182679425 -14516007 + CT-rich Low_complexity Low_complexity 2 164 0 5 1978 1256 122 27 0 chr1 182679462 182679650 -14515782 - B2_Mm2 SINE B2 -2 193 1 5 1978 721 252 57 5 chr1 182679658 182679838 -14515594 - B3A SINE B2 -5 190 2 5 1978 231 254 217 50 chr1 182679920 182680040 -14515392 - B1F SINE Alu 0 149 10 5 1978 228 345 8 63 chr1 182680050 182680177 -14515255 - ID_B1 SINE B4 0 224 105 5 1978 392 219 23 8 chr1 182680180 182680309 -14515123 + CT-rich Low_complexity Low_complexity 4 134 0 5 1978 498 427 0 0 chr1 182680355 182680533 -14514899 + polypyrimidine Low_complexity Low_complexity 2 179 0 5 1978 576 0 0 0 chr1 182680533 182680597 -14514835 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 5 1978 930 158 0 0 chr1 182680635 182680768 -14514664 - B1_Mur4 SINE Alu -17 133 1 5 1978 315 113 0 0 chr1 182680779 182680832 -14514600 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1978 1052 45 105 0 chr1 182680832 182680965 -14514467 - B1_Mm SINE Alu 0 147 1 5 1978 451 219 225 22 chr1 182680966 182681148 -14514284 - L1MC3 LINE L1 -98 7687 7469 5 1978 1384 103 11 0 chr1 182681186 182681371 -14514061 + B2_Mm1t SINE B2 1 187 -6 5 1978 21 0 0 0 chr1 182681655 182681676 -14513756 + AT_rich Low_complexity Low_complexity 1 21 0 5 1978 1572 62 0 0 chr1 182681682 182681874 -14513558 + B2_Mm1a SINE B2 2 193 0 5 1978 695 222 14 29 chr1 182684976 182685115 -14510317 - B3 SINE B2 -3 213 77 5 1978 550 291 30 81 chr1 182685230 182685428 -14510004 + B3A SINE B2 1 188 -10 5 1978 1130 57 0 0 chr1 182685474 182685615 -14509817 + B1_Mus1 SINE Alu 8 148 0 5 1978 511 197 25 127 chr1 182685910 182686067 -14509365 + RSINE1 SINE B4 25 165 0 5 1978 588 236 96 19 chr1 182686212 182686377 -14509055 - B3 SINE B2 -7 209 22 5 1978 520 216 104 7 chr1 182686425 182686560 -14508872 + B1_Mur2 SINE Alu 1 148 -1 5 1978 429 282 79 20 chr1 182686593 182686745 -14508687 + RSINE1 SINE B4 3 163 -2 5 1978 329 297 45 3 chr1 182686878 182686984 -14508448 - B3A SINE B2 -11 205 97 5 1978 332 160 74 0 chr1 182686997 182687076 -14508356 - ORR1C2 LTR MaLR -2 382 277 5 1978 1090 116 122 0 chr1 182687137 182687309 -14508123 - URR1A DNA MER1_type 0 226 34 5 1978 207 0 0 0 chr1 182687450 182687473 -14507959 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1978 258 32 0 0 chr1 182687559 182687590 -14507842 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1978 1010 69 0 0 chr1 182688514 182688644 -14506788 - B1_Mus2 SINE Alu 0 147 18 5 1978 387 281 56 3 chr1 182688915 182689036 -14506396 - Lx7 LINE L1 -1888 5756 5632 5 1978 279 260 79 13 chr1 182689047 182689199 -14506233 - L1M2 LINE L1 -863 5434 5273 5 1978 438 175 206 0 chr1 182689199 182689296 -14506136 + B1_Mur1 SINE Alu 2 118 -31 5 1978 3175 32 3 0 chr1 182689388 182689759 -14505673 - L1Md_F3 LINE L1 -14 6570 6199 5 1978 316 303 89 8 chr1 182689774 182689897 -14505535 - L1MD LINE L1 -1913 4233 4101 5 1978 544 211 9 0 chr1 182689900 182690009 -14505423 + B1_Mur2 SINE Alu 39 148 -1 5 1978 735 198 160 27 chr1 182690027 182690214 -14505218 + B3 SINE B2 5 216 0 5 1978 1374 249 62 32 chr1 182690226 182690394 -14505038 - L1_Mur3 LINE L1 -1781 4099 3930 5 1978 762 132 191 19 chr1 182690394 182690523 -14504909 + B2_Mm2 SINE B2 1 149 -46 5 1978 333 0 0 0 chr1 182690523 182690560 -14504872 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1978 487 0 32 0 chr1 182690567 182690630 -14504802 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1978 762 132 191 19 chr1 182690630 182690654 -14504778 + B2_Mm2 SINE B2 168 189 -6 5 1978 1374 249 62 32 chr1 182690654 182690921 -14504511 - L1_Mur3 LINE L1 -1951 3929 3651 5 1978 180 111 0 0 chr1 182690922 182690949 -14504483 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1978 940 95 7 49 chr1 182690949 182691093 -14504339 - B1_Mus1 SINE Alu 0 148 11 5 1978 247 77 89 71 chr1 182691109 182691165 -14504267 - B1_Mur3 SINE Alu 0 149 93 5 1978 1176 65 133 17 chr1 182691232 182691385 -14504047 + B2_Mm2 SINE B2 2 161 -34 5 1978 180 0 0 0 chr1 182691385 182691405 -14504027 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 5 1978 1176 65 133 17 chr1 182691405 182691424 -14504008 + B2_Mm2 SINE B2 162 193 -2 5 1978 213 175 0 0 chr1 182691429 182691469 -14503963 + GA-rich Low_complexity Low_complexity 1 40 0 5 1978 250 275 43 0 chr1 182691498 182691509 -14503923 - tRNA-Ala-GCA tRNA tRNA 0 75 4 5 1978 298 241 17 0 chr1 182691509 182691567 -14503865 - ID4 SINE ID -15 68 10 5 1978 466 213 46 1 chr1 182691650 182691774 -14503658 + PB1D10 SINE Alu 2 131 -18 5 1978 236 282 26 0 chr1 182691777 182691855 -14503577 + ID4 SINE ID 3 82 -1 5 1978 436 207 104 133 chr1 182692221 182692394 -14503038 + MER5A DNA MER1_type 1 168 -21 5 1978 224 233 53 27 chr1 182692487 182692510 -14502922 - ID_B1 SINE B4 -62 162 86 5 1978 228 160 0 39 chr1 182692510 182692562 -14502870 - B1F1 SINE Alu -95 54 5 6 1978 1715 191 100 5 chr1 182692650 182693029 -14502403 - MTD LTR MaLR -4 415 1 6 1978 376 308 69 0 chr1 182693327 182693457 -14501975 - MLT1G1 LTR MaLR -438 141 3 6 1978 464 230 115 0 chr1 182694382 182694495 -14500937 - RSINE1 SINE B4 -37 128 3 6 1978 222 208 0 0 chr1 182694551 182694604 -14500828 + (CCA)n Simple_repeat Simple_repeat 2 54 0 6 1978 333 68 0 0 chr1 182694606 182694650 -14500782 + (TCC)n Simple_repeat Simple_repeat 2 45 0 6 1978 324 250 157 11 chr1 182694661 182694750 -14500682 - PB1D10 SINE Alu -6 114 13 6 1978 423 243 136 0 chr1 182694839 182694942 -14500490 + B1F SINE Alu 1 117 -32 6 1978 216 0 0 0 chr1 182695009 182695033 -14500399 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1978 808 128 7 85 chr1 182695042 182695078 -14500354 - B1_Mur4 SINE Alu -1 149 121 6 1978 3072 76 10 0 chr1 182695078 182695474 -14499958 + MTB LTR MaLR 1 400 0 6 1978 808 128 7 85 chr1 182695474 182695590 -14499842 - B1_Mur4 SINE Alu -30 120 9 6 1978 1230 42 0 0 chr1 182695969 182696111 -14499321 + B1_Mus2 SINE Alu 1 142 -5 6 1978 806 156 13 58 chr1 182696121 182696277 -14499155 + B1_Mur3 SINE Alu 1 149 0 6 1978 450 289 0 3 chr1 182696372 182696686 -14498746 + GA-rich Low_complexity Low_complexity 1 312 0 6 1978 373 274 89 110 chr1 182696686 182696932 -14498500 - ORR1D2 LTR MaLR -108 262 22 6 1978 1144 56 14 0 chr1 182697049 182697193 -14498239 - B1_Mus2 SINE Alu 0 147 2 6 1978 378 57 0 0 chr1 182697542 182697595 -14497837 + (GTTTG)n Simple_repeat Simple_repeat 5 57 0 6 1978 633 261 114 0 chr1 182697595 182697779 -14497653 - ID_B1 SINE B4 -13 211 7 6 1978 222 91 0 0 chr1 182699325 182699358 -14496074 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1978 1191 107 42 21 chr1 182699456 182699647 -14495785 + B2_Mm2 SINE B2 1 195 0 6 1978 228 209 267 0 chr1 182699672 182699758 -14495674 + ORR1E LTR MaLR 1 109 -250 6 1978 398 318 0 9 chr1 182700383 182700491 -14494941 + ID_B1 SINE B4 114 220 -4 6 1978 1242 95 0 0 chr1 182700492 182700671 -14494761 + (GGA)n Simple_repeat Simple_repeat 2 180 0 6 1978 816 40 0 0 chr1 182700671 182700771 -14494661 + (GAA)n Simple_repeat Simple_repeat 1 100 0 6 1978 225 0 0 0 chr1 182700769 182700794 -14494638 + (CAG)n Simple_repeat Simple_repeat 2 26 0 6 1978 1210 43 0 0 chr1 182700926 182701066 -14494366 - B1_Mus1 SINE Alu -7 141 2 6 1978 180 0 0 0 chr1 182701177 182701197 -14494235 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1978 225 94 0 0 chr1 182701856 182701888 -14493544 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1978 2678 152 184 62 chr1 182702420 182703094 -14492338 + RMER6A LTR ERVK 1 756 0 6 1978 1263 35 0 0 chr1 182703167 182703312 -14492120 + B1_Mus2 SINE Alu 2 146 -1 6 1978 324 262 0 34 chr1 182703761 182703862 -14491570 + PB1D7 SINE Alu 34 129 -20 6 1978 1120 90 0 14 chr1 182703862 182704009 -14491423 + B1_Mus2 SINE Alu 1 145 -2 6 1978 220 336 0 41 chr1 182704009 182704028 -14491404 + B1F1 SINE Alu 130 148 -1 6 1978 301 282 197 24 chr1 182704067 182704194 -14491238 + RSINE1 SINE B4 1 149 -16 6 1978 256 204 186 41 chr1 182704248 182704345 -14491087 - PB1 SINE Alu -16 111 1 6 1978 230 239 44 15 chr1 182704379 182704447 -14490985 + ID4_ SINE ID 2 71 -12 6 1978 541 281 64 7 chr1 182704511 182704651 -14490781 + ID_B1 SINE B4 77 224 0 6 1978 1388 50 38 22 chr1 182704655 182704840 -14490592 + B2_Mm2 SINE B2 2 189 -6 6 1978 1053 217 19 0 chr1 182704905 182705112 -14490320 - B3 SINE B2 -5 211 1 6 1978 1159 50 0 7 chr1 182707026 182707168 -14488264 + B1_Mus1 SINE Alu 1 141 -7 6 1978 594 41 0 0 chr1 182707168 182707241 -14488191 + (GGA)n Simple_repeat Simple_repeat 3 75 0 6 1978 260 239 164 0 chr1 182707304 182707371 -14488061 + LTR82B Low_complexity ERVL 71 148 -682 6 1978 364 213 101 9 chr1 182708885 182708994 -14486438 + PB1D9 SINE Alu 1 119 -1 6 1978 192 344 32 0 chr1 182709248 182709341 -14486091 - L2 LINE L2 -944 2475 2380 6 1978 395 214 57 11 chr1 182709426 182709525 -14485907 - B1_Mur4 SINE Alu -27 123 20 6 1978 23 33 0 0 chr1 182709529 182709559 -14485873 + AT_rich Low_complexity Low_complexity 1 30 0 6 1978 287 235 15 0 chr1 182709571 182709639 -14485793 + Charlie5 DNA MER1_type 2240 2308 -316 6 1978 217 327 0 0 chr1 182709646 182709701 -14485731 + B3A SINE B2 76 130 -68 6 1978 369 0 0 0 chr1 182709701 182709742 -14485690 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 6 1978 291 93 0 0 chr1 182709854 182709897 -14485535 + (TCC)n Simple_repeat Simple_repeat 3 45 0 6 1978 706 124 32 40 chr1 182709903 182710029 -14485403 - B1F2 SINE Alu 0 149 25 6 1978 243 0 0 0 chr1 182710154 182710181 -14485251 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1978 230 178 22 0 chr1 182711824 182711869 -14483563 + B1_Mus1 SINE Alu 1 46 -102 6 1978 530 167 0 8 chr1 182711913 182712046 -14483386 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 1978 219 36 0 0 chr1 182712435 182712463 -14482969 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1978 873 184 0 7 chr1 182712496 182712633 -14482799 - B1_Mur1 SINE Alu -13 136 1 6 1978 692 162 64 134 chr1 182712652 182712738 -14482694 - B1_Mus1 SINE Alu 0 148 78 6 1978 1696 31 0 0 chr1 182712738 182712931 -14482501 - B2_Mm1a SINE B2 0 193 1 6 1978 692 162 64 134 chr1 182712931 182713001 -14482431 - B1_Mus1 SINE Alu -71 77 3 6 1978 234 329 12 24 chr1 182713934 182714018 -14481414 - MIRc SINE MIR -170 98 16 6 1978 1256 48 0 0 chr1 182714180 182714326 -14481106 + B1_Mus1 SINE Alu 2 147 -1 6 1979 226 322 83 90 chr1 182714460 182714556 -14480876 + B4A SINE B4 34 129 -163 6 1979 606 51 0 0 chr1 182714556 182714634 -14480798 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1979 226 322 83 90 chr1 182714634 182714670 -14480762 + B4A SINE B4 130 165 -127 6 1979 334 280 5 41 chr1 182714803 182714924 -14480508 + ID4_ SINE ID 2 124 -28 6 1979 362 349 31 8 chr1 182715080 182715207 -14480225 + MTEa LTR MaLR 1 130 -249 6 1979 430 228 42 34 chr1 182715267 182715385 -14480047 - PB1D9 SINE Alu 0 120 2 6 1979 237 299 21 65 chr1 182715398 182715491 -14479941 + MTD LTR MaLR 36 124 -295 6 1979 728 159 55 16 chr1 182715545 182715673 -14479759 - B1_Mur4 SINE Alu -16 134 2 6 1979 283 289 13 26 chr1 182715674 182715752 -14479680 + MTD LTR MaLR 119 195 -224 6 1979 252 86 0 0 chr1 182715761 182715796 -14479636 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 6 1979 466 158 13 245 chr1 182715893 182716044 -14479388 - B1_Mur1 SINE Alu -20 129 14 6 1979 484 288 134 25 chr1 182716070 182716227 -14479205 - B4A SINE B4 -86 206 33 6 1979 190 256 149 11 chr1 182716236 182716323 -14479109 - MIR SINE MIR -59 203 105 6 1979 607 293 62 69 chr1 182716394 182716669 -14478763 + B4 SINE B4 2 274 -18 6 1979 512 89 0 12 chr1 182716697 182716777 -14478655 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1979 216 220 80 0 chr1 182716777 182716827 -14478605 - ID4 SINE ID -27 56 3 6 1979 327 290 35 53 chr1 182716827 182716940 -14478492 - PB1 SINE Alu -4 123 13 6 1979 300 302 153 25 chr1 182716940 182716990 -14478442 - ID_B1 SINE B4 -5 219 36 6 1979 533 226 72 8 chr1 182716957 182717082 -14478350 - B1_Mur1 SINE Alu -8 141 9 6 1979 245 422 21 37 chr1 182717385 182717572 -14477860 - MLT1K LTR MaLR -279 316 133 6 1979 1252 41 0 7 chr1 182717904 182718041 -14477391 + B1_Mus2 SINE Alu 1 137 -10 6 1979 186 43 0 0 chr1 182718041 182718064 -14477368 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1979 1488 231 27 49 chr1 182718168 182718569 -14476863 - MTE2a LTR MaLR -13 406 18 6 1979 201 68 68 0 chr1 182718723 182718767 -14476665 + (TTG)n Simple_repeat Simple_repeat 1 47 0 6 1979 258 280 31 85 chr1 182719110 182719239 -14476193 + ORR1D1 LTR MaLR 17 138 -236 6 1979 230 324 13 13 chr1 182719348 182719423 -14476009 + ORR1D1 LTR MaLR 290 364 -15 6 1979 2447 65 15 12 chr1 182719557 182719884 -14475548 - MTB_Mm LTR MaLR 0 407 80 6 1979 260 350 83 8 chr1 182719851 182719972 -14475460 - B1F1 SINE Alu -10 139 10 6 1979 232 315 72 80 chr1 182719972 182719989 -14475443 - B4A SINE B4 -75 217 81 6 1979 490 207 78 55 chr1 182720237 182720439 -14474993 - B2_Mm2 SINE B2 -7 209 1 6 1979 654 214 23 0 chr1 182720439 182720567 -14474865 - B4A SINE B4 -62 230 100 6 1979 323 239 32 2 chr1 182721609 182721678 -14473754 - B4A SINE B4 -196 96 27 6 1979 313 269 111 0 chr1 182721679 182721766 -14473666 - PB1D10 SINE Alu -39 110 13 6 1979 273 375 71 0 chr1 182721766 182721791 -14473641 - ID_B1 SINE B4 -36 188 69 6 1979 1020 289 60 20 chr1 182721987 182722389 -14473043 + ERVL-E-int LTR ERVL 3368 3785 -1882 6 1979 207 0 0 0 chr1 182722522 182722545 -14472887 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1979 822 200 6 22 chr1 182722583 182722762 -14472670 + B2_Mm2 SINE B2 7 182 -13 6 1979 669 277 92 25 chr1 182723013 182723294 -14472138 + ERVL-E-int LTR ERVL 3986 4285 -1382 6 1979 216 250 0 0 chr1 182724715 182724755 -14470677 + polypyrimidine Low_complexity Low_complexity 3 42 0 6 1979 621 208 253 35 chr1 182724793 182724967 -14470465 - B3 SINE B2 -3 213 2 6 1979 739 154 7 81 chr1 182725013 182725161 -14470271 - B1_Mur4 SINE Alu -6 144 8 6 1979 504 117 0 0 chr1 182725168 182725245 -14470187 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1979 443 149 0 0 chr1 182725248 182725322 -14470110 + B1_Mur3 SINE Alu 74 147 -2 6 1979 278 239 77 0 chr1 182725331 182725461 -14469971 + ORR1B1-int LTR MaLR 615 754 -755 6 1979 980 63 0 0 chr1 182725360 182725486 -14469946 + B1_Mus1 SINE Alu 8 133 -15 6 1979 836 170 14 28 chr1 182725862 182726007 -14469425 - B1_Mur1 SINE Alu -1 148 6 6 1979 396 239 10 83 chr1 182726216 182726312 -14469120 - RSINE1 SINE B4 -74 91 3 7 1979 438 239 18 44 chr1 182726338 182726452 -14468980 - ID_B1 SINE B4 -12 212 102 7 1979 198 0 0 0 chr1 182726514 182726536 -14468896 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1979 319 239 159 0 chr1 182726716 182726804 -14468628 + PB1D10 SINE Alu 14 115 -2 7 1979 202 319 227 35 chr1 182727472 182727732 -14467700 + L2a LINE L2 3097 3406 -20 7 1979 1466 129 61 22 chr1 182727740 182728017 -14467415 + RMER6A LTR ERVK 469 756 0 7 1979 394 292 49 84 chr1 182728033 182728054 -14467378 + B4 SINE B4 43 63 -229 7 1979 248 207 207 0 chr1 182728054 182728112 -14467320 + ID4_ SINE ID 1 70 -13 7 1979 394 292 49 84 chr1 182728112 182728145 -14467287 + B4 SINE B4 64 91 -201 7 1979 635 144 31 0 chr1 182728145 182728242 -14467190 + B1_Mur3 SINE Alu 1 100 -49 7 1979 311 234 324 9 chr1 182728244 182728352 -14467080 + B1_Mur1 SINE Alu 1 142 -7 7 1979 666 302 10 15 chr1 182728367 182728572 -14466860 + B3 SINE B2 1 204 -12 7 1979 694 213 68 42 chr1 182728596 182728787 -14466645 - B3 SINE B2 -12 204 9 7 1979 238 235 20 0 chr1 182728833 182728884 -14466548 - PB1D9 SINE Alu -68 52 1 7 1979 219 157 43 0 chr1 182728989 182729059 -14466373 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1979 290 288 189 62 chr1 182729158 182729417 -14466015 - B4A SINE B4 0 292 1 7 1979 205 245 57 0 chr1 182729560 182729613 -14465819 + MIR SINE MIR 64 119 -89 7 1979 1629 47 0 0 chr1 182729793 182729986 -14465446 - B2_Mm1a SINE B2 0 193 1 7 1979 1023 69 46 0 chr1 182730056 182730187 -14465245 + B1_Mus2 SINE Alu 1 137 -10 7 1979 269 26 26 0 chr1 182730187 182730225 -14465207 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1979 629 232 95 11 chr1 182730234 182730413 -14465019 - B3 SINE B2 -10 206 13 7 1979 532 122 290 0 chr1 182730443 182730550 -14464882 + B1_Mus1 SINE Alu 2 139 -9 7 1979 198 0 0 0 chr1 182730550 182730572 -14464860 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 7 1979 1427 55 11 16 chr1 182730634 182730820 -14464612 - B2_Mm2 SINE B2 -8 187 3 7 1979 665 185 29 22 chr1 182731076 182731214 -14464218 + B1_Mus2 SINE Alu 5 143 -4 7 1979 287 264 153 0 chr1 182731214 182731286 -14464146 - ID_B1 SINE B4 -32 192 110 7 1979 218 227 42 70 chr1 182731701 182731772 -14463660 + PB1D10 SINE Alu 53 141 -8 7 1979 513 256 163 43 chr1 182732018 182732202 -14463230 - ID_B1 SINE B4 -13 211 6 7 1979 1058 65 43 7 chr1 182733972 182734112 -14461320 - B1_Mm SINE Alu -1 146 2 7 1979 913 271 45 18 chr1 182734479 182734701 -14460731 - B4A SINE B4 -64 228 1 7 1979 336 345 8 42 chr1 182734758 182734876 -14460556 - B4A SINE B4 -178 114 1 7 1979 1091 123 17 6 chr1 182734931 182735103 -14460329 + B2_Mm2 SINE B2 1 174 -21 7 1979 252 312 62 0 chr1 182735497 182735577 -14459855 + RSINE1 SINE B4 5 89 -76 7 1979 283 253 25 25 chr1 182735923 182736004 -14459428 + PB1D10 SINE Alu 33 113 -4 7 1979 710 127 18 0 chr1 182736243 182736353 -14459079 - PB1D9 SINE Alu -7 113 2 7 1979 286 244 51 20 chr1 182736436 182736543 -14458889 - PB1D10 SINE Alu 0 120 2 7 1979 220 349 26 94 chr1 182736579 182736696 -14458736 + PB1D10 SINE Alu 2 110 -7 7 1979 314 296 84 46 chr1 182736687 182736704 -14458728 + ID_B1 SINE B4 74 209 -15 7 1979 528 193 123 0 chr1 182736704 182736818 -14458614 + B1_Mur2 SINE Alu 7 134 -15 7 1979 1004 104 14 0 chr1 182736836 182736980 -14458452 + B1_Mus1 SINE Alu 3 148 0 7 1979 600 235 67 94 chr1 182736980 182737234 -14458198 - RLTR15 LTR ERVK -112 247 1 7 1979 243 88 0 0 chr1 182737248 182737282 -14458150 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1979 360 258 214 16 chr1 182737287 182737445 -14457987 - B3A SINE B2 -30 186 2 7 1979 308 336 35 78 chr1 182737610 182737752 -14457680 - B1F SINE Alu -13 136 1 7 1979 420 224 29 67 chr1 182737791 182737896 -14457536 - PB1D10 SINE Alu -7 110 10 7 1979 393 196 37 110 chr1 182738150 182738259 -14457173 - PB1D9 SINE Alu -7 113 13 7 1979 573 174 149 0 chr1 182738316 182738437 -14456995 + B1_Mus1 SINE Alu 1 139 -9 7 1979 382 309 94 17 chr1 182738447 182738628 -14456804 + ID_B1 SINE B4 28 222 -2 7 1979 21 0 0 0 chr1 182738638 182738659 -14456773 + AT_rich Low_complexity Low_complexity 1 21 0 7 1979 281 244 234 4 chr1 182739231 182739354 -14456078 - B3 SINE B2 -20 178 31 7 1979 225 0 0 0 chr1 182739847 182739872 -14455560 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1979 1158 82 0 0 chr1 182739872 182740019 -14455413 - B1_Mus1 SINE Alu 0 148 2 7 1979 267 200 0 0 chr1 182740049 182740094 -14455338 - B1_Mus1 SINE Alu -102 46 2 7 1979 325 254 144 15 chr1 182740678 182740810 -14454622 + B1F SINE Alu 1 149 0 7 1979 292 148 76 42 chr1 182741027 182741111 -14454321 - PB1D9 SINE Alu -13 134 44 7 1979 310 216 232 9 chr1 182741370 182741411 -14454021 + L1MEg LINE L1 1814 1855 -4229 7 1979 1075 43 65 0 chr1 182741411 182741549 -14453883 + B1_Mus2 SINE Alu 1 147 0 7 1979 310 216 232 9 chr1 182741549 182741619 -14453813 + L1MEg LINE L1 1856 1949 -4135 7 1979 280 103 0 0 chr1 182741649 182741688 -14453744 + B3 SINE B2 2 40 -176 7 1979 267 103 0 0 chr1 182742462 182742501 -14452931 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1979 23 0 0 0 chr1 182743727 182743750 -14451682 + GC_rich Low_complexity Low_complexity 1 23 0 7 1979 207 216 21 54 chr1 182743799 182743892 -14451540 + (CCCG)n Simple_repeat Simple_repeat 3 92 0 7 1979 24 100 0 0 chr1 182744048 182744128 -14451304 + GC_rich Low_complexity Low_complexity 1 80 0 7 1979 22 56 0 0 chr1 182744257 182744293 -14451139 + GC_rich Low_complexity Low_complexity 1 36 0 7 1979 206 62 0 30 chr1 182745526 182745559 -14449873 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1979 452 203 83 83 chr1 182745851 182745996 -14449436 - B1_Mur1 SINE Alu 0 149 5 7 1979 410 333 14 0 chr1 182746170 182746317 -14449115 + B1F2 SINE Alu 1 149 0 7 1979 257 277 96 48 chr1 182746378 182746503 -14448929 + L2a LINE L2 3223 3353 -73 7 1979 1118 63 21 0 chr1 182746568 182746710 -14448722 - B1_Mus2 SINE Alu -1 146 2 7 1979 341 225 45 18 chr1 182746847 182746956 -14448476 - PB1D10 SINE Alu -5 144 36 7 1979 212 264 195 0 chr1 182747140 182747227 -14448205 - PB1D7 SINE Alu -14 106 3 7 1979 291 275 62 0 chr1 182747153 182747233 -14448199 - B4 SINE B4 -126 166 82 7 1979 243 154 0 0 chr1 182747235 182747274 -14448158 - B1_Mus2 SINE Alu 0 147 109 7 1979 301 309 53 68 chr1 182747265 182747397 -14448035 - B4 SINE B4 -134 158 29 7 1979 854 223 88 10 chr1 182747509 182747713 -14447719 - ID_B1 SINE B4 -1 223 4 7 1979 698 175 220 0 chr1 182747745 182747922 -14447510 - B3 SINE B2 0 216 1 7 1979 309 216 227 0 chr1 182748879 182748967 -14446465 - PB1D7 SINE Alu -2 118 11 7 1979 255 283 74 166 chr1 182748967 182749108 -14446324 - ID_B1 SINE B4 -2 222 15 7 1979 288 270 69 14 chr1 182749044 182749116 -14446316 - ID4 SINE ID -5 78 3 7 1979 1462 37 25 69 chr1 182749248 182749450 -14445982 + B2_Mm1a SINE B2 1 193 0 7 1979 622 202 48 0 chr1 182749466 182749590 -14445842 + B1_Mur2 SINE Alu 10 139 -10 7 1979 285 204 0 0 chr1 182749599 182749643 -14445789 + ID_B1 SINE B4 81 124 -100 7 1979 280 208 0 20 chr1 182749600 182749649 -14445783 + B1F2 SINE Alu 1 48 -101 7 1979 195 94 0 0 chr1 182749721 182749743 -14445689 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1979 1045 83 14 14 chr1 182749743 182749889 -14445543 + B1_Mus2 SINE Alu 2 147 0 7 1979 195 94 0 0 chr1 182749889 182749898 -14445534 + (A)n Simple_repeat Simple_repeat 1 9 0 7 1979 1083 82 7 27 chr1 182749925 182750075 -14445357 + B1_Mus1 SINE Alu 2 148 0 7 1979 270 283 41 16 chr1 182750099 182750221 -14445211 + BC1_Mm scRNA scRNA 8 132 -20 7 1979 775 195 35 45 chr1 182750414 182750613 -14444819 + B3A SINE B2 1 197 -1 7 1979 1486 43 49 0 chr1 182750661 182750845 -14444587 + B2_Mm1t SINE B2 1 193 0 7 1979 254 276 65 19 chr1 182750868 182750975 -14444457 + B1F SINE Alu 5 116 -33 7 1979 238 219 210 40 chr1 182751052 182751152 -14444280 + PB1D10 SINE Alu 1 117 0 7 1979 448 221 18 55 chr1 182751319 182751429 -14444003 + B4A SINE B4 187 292 0 7 1979 210 71 0 0 chr1 182751494 182751522 -14443910 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 7 1979 518 245 0 0 chr1 182751522 182751624 -14443808 - PB1D10 SINE Alu -5 112 11 7 1979 1020 103 28 0 chr1 182751769 182751914 -14443518 + B1_Mur4 SINE Alu 1 149 -1 7 1979 564 192 141 8 chr1 182751979 182752100 -14443332 + RSINE1 SINE B4 4 140 -25 7 1979 617 191 0 42 chr1 182752327 182752447 -14442985 - B1_Mus1 SINE Alu -32 116 2 7 1979 446 242 12 123 chr1 182752447 182752498 -14442934 - MT2B LTR ERVL -450 151 120 7 1979 397 205 0 152 chr1 182752856 182752871 -14442561 + MT2B LTR ERVL 153 164 -437 7 1979 497 200 84 123 chr1 182752871 182753025 -14442407 + B1F2 SINE Alu 2 149 0 7 1979 397 205 0 152 chr1 182753025 182753141 -14442291 + MT2B LTR ERVL 165 264 -337 7 1979 934 133 0 0 chr1 182753029 182753164 -14442268 + B1_Mur3 SINE Alu 3 137 -12 7 1979 312 83 0 0 chr1 182753207 182753255 -14442177 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1979 558 229 0 0 chr1 182753290 182753469 -14441963 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1979 887 242 156 31 chr1 182753481 182753737 -14441695 - B4A SINE B4 -3 289 2 8 1979 372 252 38 75 chr1 182754196 182754215 -14441217 + ID_B1 SINE B4 69 196 -28 8 1979 466 222 18 53 chr1 182754215 182754329 -14441103 + B1F SINE Alu 9 118 -31 8 1979 370 0 40 0 chr1 182754330 182754380 -14441052 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1979 1229 61 0 0 chr1 182754514 182754662 -14440770 + B1_Mus1 SINE Alu 1 148 0 8 1979 189 0 0 0 chr1 182754666 182754687 -14440745 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 8 1979 377 246 26 26 chr1 182754817 182754934 -14440498 + BC1_Mm scRNA scRNA 6 122 -30 8 1979 385 298 85 19 chr1 182755410 182755516 -14439916 + RSINE1 SINE B4 3 115 -50 8 1979 213 39 0 0 chr1 182755550 182755576 -14439856 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 8 1979 632 239 78 17 chr1 182755671 182755850 -14439582 - MIR SINE MIR -60 202 13 8 1979 1285 55 60 22 chr1 182756164 182756349 -14439083 + B2_Mm2 SINE B2 2 193 -2 8 1979 298 233 12 88 chr1 182756393 182756457 -14438975 - ID4 SINE ID -2 81 24 8 1979 511 242 112 35 chr1 182756457 182756704 -14438728 - MTEa LTR MaLR -1 378 97 8 1979 410 208 36 90 chr1 182757250 182757361 -14438071 - MTEa LTR MaLR -274 105 1 8 1979 262 239 129 89 chr1 182757455 182757579 -14437853 - MLT1E1A LTR MaLR -8 646 518 8 1979 288 343 43 70 chr1 182757562 182757750 -14437682 - MLT1E1A LTR MaLR -236 444 278 8 1979 326 304 0 19 chr1 182757774 182757878 -14437554 + PB1D10 SINE Alu 1 102 -15 8 1979 291 322 118 57 chr1 182758100 182758380 -14437052 + LTR16E1 LTR ERVL 213 509 -29 8 1979 478 195 122 17 chr1 182758363 182758478 -14436954 + B1_Mur1 SINE Alu 23 149 0 8 1979 309 276 76 68 chr1 182758366 182758498 -14436934 + B4 SINE B4 111 243 -49 8 1979 219 267 118 13 chr1 182758643 182758719 -14436713 + ID SINE ID 2 85 -139 8 1979 1128 263 112 68 chr1 182758893 182758937 -14436495 + MTD LTR MaLR 19 50 -369 8 1979 1121 95 0 0 chr1 182758937 182759084 -14436348 + B1_Mus1 SINE Alu 2 148 0 8 1979 1128 263 112 68 chr1 182759084 182759423 -14436009 + MTD LTR MaLR 51 419 0 8 1979 1175 54 0 20 chr1 182759476 182759626 -14435806 - B1_Mm SINE Alu 0 147 1 8 1979 378 0 0 0 chr1 182761097 182761139 -14434293 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1979 207 152 0 0 chr1 182762079 182762125 -14433307 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 8 1979 794 257 64 48 chr1 182762132 182762381 -14433051 - MER2 DNA MER2_type -3 342 90 8 1979 340 317 39 0 chr1 182762370 182762474 -14432958 + PB1D7 SINE Alu 12 119 -1 8 1979 609 182 91 0 chr1 182762574 182762684 -14432748 - PB1D9 SINE Alu 0 120 1 8 1979 664 267 62 34 chr1 182762728 182762899 -14432533 + B3A SINE B2 14 191 -7 8 1979 620 181 0 9 chr1 182762899 182763005 -14432427 + U6 snRNA snRNA 1 105 -2 8 1979 476 298 0 0 chr1 182763167 182763271 -14432161 - RSINE1 SINE B4 -24 141 38 8 1979 249 302 30 50 chr1 182763489 182763539 -14431893 + PB1D10 SINE Alu 1 48 -69 8 1979 400 286 128 5 chr1 182763539 182763715 -14431717 + B3A SINE B2 3 198 0 8 1979 1089 174 30 0 chr1 182763717 182763918 -14431514 + B3 SINE B2 1 207 -9 8 1979 691 289 99 56 chr1 182763939 182764080 -14431352 + ID_B1 SINE B4 1 145 -79 8 1979 928 140 134 0 chr1 182764080 182764237 -14431195 + B2_Mm1t SINE B2 2 179 -14 8 1979 691 289 99 56 chr1 182764237 182764308 -14431124 + ID_B1 SINE B4 146 222 -2 8 1979 400 285 56 24 chr1 182764335 182764348 -14431084 + B4 SINE B4 75 91 -201 8 1979 670 207 0 0 chr1 182764348 182764469 -14430963 + B1_Mus2 SINE Alu 1 121 -26 8 1979 922 132 0 0 chr1 182764632 182764768 -14430664 + B1_Mur4 SINE Alu 2 137 -13 8 1979 402 21 0 0 chr1 182764768 182764815 -14430617 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 8 1979 468 123 0 0 chr1 182765237 182765310 -14430122 + (GGA)n Simple_repeat Simple_repeat 1 73 0 8 1979 3071 122 67 18 chr1 182765728 182766237 -14429195 + RLTR20C LTR ERVK 1 534 0 8 1979 763 245 71 10 chr1 182766293 182766403 -14429029 - B3 SINE B2 -2 214 100 8 1979 203 0 37 0 chr1 182766403 182766430 -14429002 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 8 1979 763 245 71 10 chr1 182766430 182766517 -14428915 - B3 SINE B2 -117 99 5 8 1979 228 194 0 75 chr1 182766524 182766578 -14428854 + T-rich Low_complexity Low_complexity 12 62 0 8 1979 1246 48 0 0 chr1 182766578 182766723 -14428709 - B1_Mm SINE Alu -2 145 1 8 1979 228 194 0 75 chr1 182766723 182766735 -14428697 + T-rich Low_complexity Low_complexity 1 11 0 8 1979 509 307 11 84 chr1 182766735 182766913 -14428519 - ID_B1 SINE B4 0 224 60 8 1979 573 14 0 0 chr1 182767027 182767101 -14428331 + L1Md_F3 LINE L1 6497 6570 -14 8 1979 289 269 0 0 chr1 182767121 182767188 -14428244 + ID4 SINE ID 8 74 -9 8 1979 288 0 0 0 chr1 182767935 182767967 -14427465 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1979 919 144 23 0 chr1 182768458 182768632 -14426800 + GA-rich Low_complexity Low_complexity 1 178 0 8 1979 281 122 59 39 chr1 182768974 182769025 -14426407 - PB1D7 SINE Alu -3 117 66 8 1979 487 216 25 75 chr1 182768982 182769102 -14426330 - ID_B1 SINE B4 -9 215 102 8 1979 198 71 0 0 chr1 182769116 182769144 -14426288 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1979 637 146 131 0 chr1 182769218 182769348 -14426084 - B1_Mus1 SINE Alu 0 148 2 8 1979 702 82 0 0 chr1 182769932 182770030 -14425402 + (TC)n Simple_repeat Simple_repeat 2 99 0 8 1979 393 22 0 0 chr1 182770030 182770075 -14425357 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1979 1140 59 0 0 chr1 182770207 182770343 -14425089 + B1_Mus1 SINE Alu 3 138 -10 8 1979 465 211 1 2 chr1 182770360 182770437 -14424995 - B1_Mus2 SINE Alu -13 136 59 8 1979 1261 113 32 0 chr1 182770437 182770622 -14424810 + B2_Mm2 SINE B2 3 193 -2 8 1979 464 227 39 136 chr1 182770622 182770689 -14424743 - B1_Mur3 SINE Alu -84 66 5 8 1979 699 280 16 0 chr1 182770691 182770877 -14424555 - B4A SINE B4 -63 229 41 8 1979 231 252 261 23 chr1 182771000 182771130 -14424302 + MER5A DNA MER1_type 28 188 -1 8 1979 328 261 10 93 chr1 182771228 182771325 -14424107 + B1F1 SINE Alu 2 90 -59 8 1979 701 23 0 11 chr1 182771339 182771356 -14424076 + (TTC)n Simple_repeat Simple_repeat 1 17 0 8 1979 1284 89 0 0 chr1 182771356 182771536 -14423896 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1979 701 23 0 11 chr1 182771536 182771606 -14423826 + (TTC)n Simple_repeat Simple_repeat 3 72 0 8 1979 295 292 151 66 chr1 182772104 182772471 -14422961 + MLT1A0 LTR MaLR 7 401 -7 8 1979 1001 116 14 7 chr1 182772524 182772672 -14422760 + B1_Mur2 SINE Alu 1 149 0 8 1979 362 70 35 0 chr1 182772674 182772731 -14422701 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 8 1979 368 88 18 0 chr1 182772804 182772861 -14422571 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1979 396 40 0 0 chr1 182772861 182772910 -14422522 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1979 280 265 284 0 chr1 182772913 182773015 -14422417 - RSINE1 SINE B4 -33 132 2 8 1979 1192 69 31 99 chr1 182773509 182773701 -14421731 + B2_Mm2 SINE B2 2 180 -15 8 1979 829 155 13 72 chr1 182773724 182773877 -14421555 + B1_Mur4 SINE Alu 1 144 -6 8 1979 1210 20 7 40 chr1 182773885 182774037 -14421395 + B1_Mm SINE Alu 1 147 0 8 1979 542 140 324 9 chr1 182774193 182774301 -14421131 + B1_Mur1 SINE Alu 2 143 -6 8 1979 1132 65 0 0 chr1 182774312 182774451 -14420981 + B1_Mus1 SINE Alu 5 143 -5 8 1979 2075 169 8 33 chr1 182774948 182775316 -14420116 + ORR1B2 LTR MaLR 1 359 -8 8 1979 744 235 71 5 chr1 182775742 182775939 -14419493 - ID_B1 SINE B4 -10 214 5 8 1979 4410 20 2 0 chr1 182775939 182776488 -14418944 + L1Md_T LINE L1 5386 5935 -647 8 1979 5608 31 0 3 chr1 182776877 182777528 -14417904 + L1Md_T LINE L1 5933 6581 -1 8 1979 831 251 26 78 chr1 182777586 182777893 -14417539 - B4A SINE B4 0 292 2 8 1979 561 215 106 43 chr1 182777932 182778073 -14417359 - RSINE1 SINE B4 0 165 16 8 1979 212 235 250 36 chr1 182782127 182782211 -14413221 - PB1D10 SINE Alu -14 103 2 8 1979 356 225 187 24 chr1 182782427 182782550 -14412882 + B1_Mm SINE Alu 2 144 -3 8 1979 549 274 288 39 chr1 182782837 182783367 -14412065 + LTR65 LTR ERV1 1 663 -6 8 1979 1408 61 44 0 chr1 182783506 182783687 -14411745 - B2_Mm2 SINE B2 -5 190 2 8 1979 474 278 108 24 chr1 182783717 182783883 -14411549 + B3A SINE B2 1 180 -18 8 1979 1264 98 5 16 chr1 182783926 182784112 -14411320 - B2_Mm1a SINE B2 -7 186 3 8 1979 650 145 84 17 chr1 182784743 182784862 -14410570 + B1_Mur3 SINE Alu 23 149 0 8 1979 389 340 0 0 chr1 182785226 182785332 -14410100 + MTD LTR MaLR 53 158 -261 8 1979 471 198 11 0 chr1 182785335 182785426 -14410006 - PB1D9 SINE Alu -27 93 2 8 1979 214 234 14 99 chr1 182785367 182785438 -14409994 - ID_B1 SINE B4 -82 142 78 8 1979 903 165 101 96 chr1 182786450 182786658 -14408774 + B3 SINE B2 2 210 -6 8 1979 887 145 20 33 chr1 182786700 182786850 -14408582 - B1_Mur3 SINE Alu 0 149 2 8 1979 204 267 0 0 chr1 182786859 182786904 -14408528 + GA-rich Low_complexity Low_complexity 3 47 0 8 1979 1242 48 0 0 chr1 182786967 182787114 -14408318 - B1_Mus1 SINE Alu 0 148 2 8 1979 510 274 17 0 chr1 182787240 182787357 -14408075 - PB1D7 SINE Alu -1 119 1 8 1979 216 252 289 10 chr1 182787410 182787514 -14407918 - B1F SINE Alu -10 139 7 8 1979 289 214 27 54 chr1 182787514 182787588 -14407844 - B1F2 SINE Alu -55 94 23 9 1979 695 283 132 24 chr1 182787755 182788005 -14407427 - B4A SINE B4 0 292 16 9 1979 2068 150 47 72 chr1 182788393 182788677 -14406755 - ORR1B1 LTR MaLR 0 394 137 9 1979 3144 49 36 3 chr1 182788677 182789064 -14406368 - MTB LTR MaLR 0 400 1 9 1979 2068 150 47 72 chr1 182789064 182789181 -14406251 - ORR1B1 LTR MaLR -258 136 4 9 1979 743 161 80 0 chr1 182789464 182789601 -14405831 - B1_Mur3 SINE Alu 0 149 2 9 1979 689 184 11 179 chr1 182790702 182790881 -14404551 + B1_Mur3 SINE Alu 1 149 0 9 1979 401 305 46 0 chr1 182790910 182791041 -14404391 + ID_B1 SINE B4 82 218 -6 9 1979 1500 68 16 10 chr1 182791459 182791653 -14403779 - B2_Mm2 SINE B2 0 195 1 9 1979 247 312 26 68 chr1 182791685 182791802 -14403630 - PB1D10 SINE Alu -3 114 3 9 1979 197 119 24 0 chr1 182791919 182791961 -14403471 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1979 1189 99 29 0 chr1 182792078 182792249 -14403183 + B2_Mm2 SINE B2 20 195 0 9 1979 465 171 46 42 chr1 182793011 182793133 -14402299 + B1_Mur3 SINE Alu 5 148 -1 9 1979 1159 100 61 0 chr1 182793148 182793328 -14402104 + B2_Mm2 SINE B2 3 193 -2 9 1979 553 194 39 0 chr1 182793368 182793471 -14401961 - B1F2 SINE Alu -41 108 2 9 1979 414 249 279 0 chr1 182793490 182793655 -14401777 - B3 SINE B2 -3 213 3 9 1979 386 201 136 35 chr1 182793675 182793799 -14401633 - B1F SINE Alu -2 147 9 9 1979 194 158 0 50 chr1 182794048 182794108 -14401324 + T-rich Low_complexity Low_complexity 1 57 0 9 1979 244 221 97 52 chr1 182794108 182794242 -14401190 - RMER10A LTR ERVL -45 397 258 9 1979 691 184 120 0 chr1 182794348 182794473 -14400959 - B1_Mur2 SINE Alu -9 140 1 9 1979 210 91 0 0 chr1 182794485 182794518 -14400914 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 9 1979 498 272 74 17 chr1 182794518 182794685 -14400747 - B3A SINE B2 -20 178 2 9 1979 560 139 185 62 chr1 182794805 182794935 -14400497 - B1_Mur4 SINE Alu 0 150 5 9 1979 896 176 26 95 chr1 182795227 182795459 -14399973 + B3 SINE B2 1 216 0 9 1979 333 219 24 95 chr1 182795780 182795906 -14399526 + PB1D10 SINE Alu 1 117 0 9 1979 562 256 7 74 chr1 182795913 182796048 -14399384 + ID_B1 SINE B4 84 209 -15 9 1979 351 258 112 0 chr1 182796613 182796702 -14398730 - B1F SINE Alu -3 146 48 9 1979 216 0 0 0 chr1 182796905 182796929 -14398503 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1979 472 268 186 5 chr1 182796977 182797176 -14398256 - L1MEc LINE L1 -2896 4110 3876 9 1979 730 73 349 68 chr1 182797553 182797699 -14397733 + B2_Mm2 SINE B2 2 188 -7 9 1979 402 273 89 63 chr1 182798045 182798387 -14397045 - L1MEc LINE L1 -4755 2347 1892 9 1979 1683 159 35 25 chr1 182798656 182798972 -14396460 + MTB_Mm LTR MaLR 1 319 -88 9 1979 1013 53 106 0 chr1 182799052 182799184 -14396248 - B1_Mus1 SINE Alu 0 148 3 9 1979 1342 90 16 21 chr1 182799190 182799382 -14396050 - B2_Mm2 SINE B2 -3 192 2 9 1979 355 276 46 28 chr1 182799382 182799490 -14395942 + PB1 SINE Alu 13 122 -5 9 1979 321 364 27 0 chr1 182800246 182800356 -14395076 + PB1D10 SINE Alu 1 113 -4 9 1979 180 371 55 37 chr1 182800877 182800986 -14394446 + L2 LINE L2 2961 3071 -348 9 1979 351 283 0 78 chr1 182801422 182801537 -14393895 + PB1D10 SINE Alu 3 108 -9 9 1979 410 202 160 0 chr1 182801549 182801643 -14393789 + B1_Mur3 SINE Alu 1 109 -40 9 1979 2364 88 22 0 chr1 182801644 182801964 -14393468 - ORR1A2 LTR MaLR 0 327 1 9 1979 11023 126 57 13 chr1 182801964 182802889 -14392543 - ORR1A2-int LTR MaLR 0 1963 1043 9 1979 729 0 0 0 chr1 182802889 182802970 -14392462 + (TTC)n Simple_repeat Simple_repeat 1 81 0 9 1979 986 67 52 0 chr1 182802972 182803106 -14392326 - B1_Mus2 SINE Alu -6 141 1 9 1979 11023 126 57 13 chr1 182803106 182804051 -14391381 - ORR1A2-int LTR MaLR -921 1042 9 9 1979 1178 113 41 10 chr1 182804029 182804226 -14391206 - ORR1A2 LTR MaLR -124 203 1 9 1979 195 42 0 0 chr1 182804616 182804640 -14390792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1979 1194 82 0 0 chr1 182804715 182804862 -14390570 + B1_Mm SINE Alu 1 147 0 9 1979 269 248 242 73 chr1 182805184 182805349 -14390083 + B3 SINE B2 6 198 -18 9 1979 180 0 0 0 chr1 182806119 182806139 -14389293 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1979 447 183 0 0 chr1 182806195 182806266 -14389166 - RSINE1 SINE B4 -83 82 12 9 1979 1112 82 14 0 chr1 182806295 182806442 -14388990 - B1_Mur4 SINE Alu 0 150 2 9 1979 922 139 22 0 chr1 182806491 182806628 -14388804 + B1_Mus2 SINE Alu 1 140 -7 9 1979 424 333 0 0 chr1 182806655 182806784 -14388648 + B1_Mur1 SINE Alu 1 129 -20 9 1979 1955 165 110 39 chr1 182807043 182807478 -14387954 - RMER4A LTR ERVK 0 466 1 9 1979 1382 78 15 30 chr1 182807497 182807695 -14387737 - B2_Mm2 SINE B2 0 195 1 9 1979 610 223 45 49 chr1 182807695 182807901 -14387531 - B3 SINE B2 0 216 15 9 1979 1137 73 0 0 chr1 182809721 182809858 -14385574 + B1_Mus1 SINE Alu 2 138 -10 9 1979 261 210 27 40 chr1 182810496 182810645 -14384787 + (TGAG)n Simple_repeat Simple_repeat 4 150 0 9 1979 378 0 0 0 chr1 182810675 182810717 -14384715 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1979 247 316 83 26 chr1 182810915 182811071 -14384361 + YREP_Mm Unknown Unknown 170 334 -1478 9 1979 399 338 99 0 chr1 182810935 182811077 -14384355 - ID_B1 SINE B4 -14 210 55 9 1979 254 246 87 0 chr1 182811069 182811138 -14384294 + B1F SINE Alu 73 147 -2 9 1979 251 333 94 26 chr1 182811242 182811359 -14384073 + B3 SINE B2 91 215 -1 9 1979 712 171 63 21 chr1 182811405 182811548 -14383884 + B1_Mur4 SINE Alu 2 150 0 9 1979 400 278 17 34 chr1 182811592 182811711 -14383721 - PB1 SINE Alu 0 127 11 9 1979 1391 61 11 6 chr1 182811840 182812022 -14383410 + B2_Mm2 SINE B2 12 194 -1 9 1979 363 264 95 89 chr1 182812108 182812287 -14383145 + B2_Mm2 SINE B2 2 181 -14 9 1979 385 260 37 82 chr1 182812402 182812460 -14382972 - B1F SINE Alu -9 140 85 9 1979 1158 49 14 7 chr1 182812460 182812605 -14382827 + B1_Mus1 SINE Alu 3 148 0 9 1979 385 260 37 82 chr1 182812605 182812680 -14382752 - B1F SINE Alu -65 84 13 9 1979 270 250 143 71 chr1 182812624 182812736 -14382696 + B1F SINE Alu 16 135 -14 9 1979 682 11 23 0 chr1 182813054 182813141 -14382291 + (TC)n Simple_repeat Simple_repeat 1 89 0 9 1979 421 255 0 78 chr1 182813161 182813283 -14382149 + B1F SINE Alu 15 120 0 9 1979 1218 42 0 0 chr1 182813292 182813435 -14381997 + B1_Mm SINE Alu 5 147 0 9 1979 21 0 0 0 chr1 182813471 182813492 -14381940 + AT_rich Low_complexity Low_complexity 1 21 0 9 1979 293 210 0 61 chr1 182813633 182813699 -14381733 + ID4_ SINE ID 13 74 -9 9 1979 273 268 100 35 chr1 182814578 182814748 -14380684 + L1MA6 LINE L1 5919 6099 -201 9 1979 468 304 0 9 chr1 182814870 182814983 -14380449 - PB1D7 SINE Alu 0 120 9 9 1979 273 278 223 50 chr1 182814875 182814996 -14380436 - ID_B1 SINE B4 -4 220 79 9 1979 368 245 0 138 chr1 182815105 182815228 -14380204 + MT2B LTR ERVL 155 260 -341 9 1979 782 187 0 0 chr1 182815129 182815252 -14380180 + B1_Mur1 SINE Alu 9 131 -18 9 1979 767 172 47 0 chr1 182815329 182815457 -14379975 + B1_Mus1 SINE Alu 2 135 -13 9 1979 270 73 0 0 chr1 182815458 182815499 -14379933 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 9 1979 350 214 71 88 chr1 182815512 182815532 -14379900 + MT2B LTR ERVL 137 154 -447 9 1979 528 191 32 0 chr1 182815532 182815626 -14379806 + B1F2 SINE Alu 1 97 -52 9 1979 747 146 17 23 chr1 182815626 182815801 -14379631 + GA-rich Low_complexity Low_complexity 3 176 0 9 1979 509 144 0 91 chr1 182816561 182816660 -14378772 - B1_Mur2 SINE Alu 0 149 60 9 1979 495 123 54 27 chr1 182816660 182817002 -14378430 + (CA)n Simple_repeat Simple_repeat 1 351 0 9 1979 663 236 6 31 chr1 182817462 182817624 -14377808 - B3A SINE B2 0 198 41 9 1979 189 74 0 0 chr1 182817668 182817695 -14377737 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 9 1979 545 315 67 0 chr1 182817710 182817859 -14377573 - RSINE1 SINE B4 -4 161 3 9 1979 353 257 14 0 chr1 182817901 182817971 -14377461 - ID4_ SINE ID -11 72 2 9 1979 1096 122 0 122 chr1 182819701 182819915 -14375517 + B2_Mm2 SINE B2 3 190 -5 9 1979 372 192 25 13 chr1 182820627 182820706 -14374726 - ID4 SINE ID -3 80 1 9 1979 393 279 43 35 chr1 182820911 182821026 -14374406 + MIRc SINE MIR 61 176 -92 9 1979 676 191 0 17 chr1 182821045 182821162 -14374270 + PB1D10 SINE Alu 2 116 -1 9 1979 360 0 0 0 chr1 182821166 182821206 -14374226 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1979 1137 51 22 0 chr1 182821386 182821524 -14373908 - B1_Mus2 SINE Alu -5 142 2 9 1979 396 0 0 0 chr1 182821635 182821679 -14373753 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1979 317 317 16 70 chr1 182822776 182822905 -14372527 + B1F SINE Alu 2 123 -26 9 1979 738 176 83 15 chr1 182825216 182825349 -14370083 + B1_Mus1 SINE Alu 1 142 -6 9 1979 189 0 0 0 chr1 182825350 182825371 -14370061 + (CAAAC)n Simple_repeat Simple_repeat 5 25 0 9 1979 303 295 0 49 chr1 182825499 182825581 -14369851 - B4A SINE B4 -208 84 7 9 1979 233 279 13 0 chr1 182825615 182825694 -14369738 - Lx8 LINE L1 0 7473 7394 9 1979 296 174 32 11 chr1 182825708 182825801 -14369631 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1979 536 124 64 12 chr1 182825813 182825984 -14369448 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1979 585 139 45 19 chr1 182826003 182826468 -14368964 + (TG)n Simple_repeat Simple_repeat 1 477 0 9 1979 326 292 48 68 chr1 182826472 182826534 -14368898 - B4A SINE B4 0 292 233 9 1979 301 285 171 95 chr1 182826534 182826786 -14368646 - B4A SINE B4 -18 274 4 1 1979 655 250 2 9 chr1 182826786 182826929 -14368503 - ID_B1 SINE B4 -60 232 87 9 1979 460 254 86 26 chr1 182826971 182827088 -14368344 - B1_Mur1 SINE Alu -25 124 1 1 1979 293 294 68 10 chr1 182827090 182827193 -14368239 + MER2 DNA MER2_type 179 287 -58 1 1979 256 308 113 19 chr1 182827235 182827394 -14368038 + MIRb SINE MIR 26 199 -69 1 1979 258 322 68 75 chr1 182829475 182829636 -14365796 + RLTR25A LTR ERVK 944 1103 0 1 1979 456 269 9 9 chr1 182829751 182829867 -14365565 - PB1D10 SINE Alu 0 117 2 1 1979 1215 48 7 0 chr1 182830065 182830210 -14365222 + B1_Mm SINE Alu 2 147 0 1 1979 538 236 92 23 chr1 182830795 182830925 -14364507 + B1_Mm SINE Alu 1 139 -8 1 1979 960 234 65 0 chr1 182831045 182831246 -14364186 + B3 SINE B2 1 214 -2 1 1979 261 0 0 0 chr1 182831361 182831390 -14364042 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1979 207 0 0 0 chr1 182831708 182831731 -14363701 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1979 748 172 7 63 chr1 182831731 182831874 -14363558 - B1_Mm SINE Alu -12 135 1 1 1979 307 283 254 0 chr1 182832029 182832202 -14363230 - ID_B1 SINE B4 -5 219 3 1 1979 328 115 461 0 chr1 182832234 182832336 -14363096 - B2_Mm2 SINE B2 0 195 47 1 1979 1387 63 11 0 chr1 182832423 182832597 -14362835 - B2_Mm1t SINE B2 -16 177 2 1 1979 391 276 0 41 chr1 182832601 182832722 -14362710 - PB1D10 SINE Alu -1 116 1 1 1979 548 142 42 0 chr1 182832903 182833023 -14362409 + GA-rich Low_complexity Low_complexity 2 126 0 1 1979 338 308 18 18 chr1 182833438 182833547 -14361885 + PB1 SINE Alu 17 125 -2 1 1979 455 216 21 0 chr1 182833678 182833775 -14361657 + PB1D10 SINE Alu 18 116 -1 1 1979 1451 145 214 6 chr1 182833818 182834131 -14361301 + RLTR30 LTR ERV1 1 378 -1 1 1979 209 159 23 0 chr1 182834692 182834736 -14360696 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 1 1979 1298 76 16 5 chr1 182835167 182835352 -14360080 + B2_Mm1a SINE B2 2 188 -5 1 1979 313 226 22 22 chr1 182838192 182838283 -14357149 - PB1D7 SINE Alu -9 140 42 1 1979 324 70 0 0 chr1 182838285 182838328 -14357104 + (TTCTCC)n Simple_repeat Simple_repeat 6 48 0 1 1979 193 176 44 0 chr1 182838327 182838395 -14357037 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1979 816 128 0 50 chr1 182838396 182838536 -14356896 - B1_Mur4 SINE Alu -13 137 5 1 1979 629 240 196 9 chr1 182838581 182838854 -14356578 - ORR1E LTR MaLR -7 400 19 1 1979 332 188 14 55 chr1 182839159 182839232 -14356200 + ID4 SINE ID 1 70 -13 1 1979 256 237 26 13 chr1 182839463 182839540 -14355892 + ID4_ SINE ID 1 78 -5 1 1979 361 246 59 7 chr1 182839760 182839862 -14355570 - PB1D7 SINE Alu -23 126 23 1 1979 1108 76 25 6 chr1 182840086 182840244 -14355188 + B2_Mm2 SINE B2 5 165 -30 1 1979 210 71 0 0 chr1 182840246 182840274 -14355158 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 1979 1151 55 7 0 chr1 182840274 182840420 -14355012 - B1_Mus2 SINE Alu 0 147 1 1 1979 1197 28 14 0 chr1 182840457 182840602 -14354830 - B1_Mus2 SINE Alu 0 147 1 1 1979 344 266 48 21 chr1 182840904 182841033 -14354399 - B1F SINE Alu -4 145 20 1 1979 446 304 27 68 chr1 182841955 182841999 -14353433 - B1F SINE Alu -7 142 96 1 1979 1017 157 227 108 chr1 182841999 182842214 -14353218 - ORR1C2 LTR MaLR 0 384 190 1 1979 657 0 0 0 chr1 182842214 182842287 -14353145 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1979 1017 157 227 108 chr1 182842287 182842414 -14353018 - ORR1C2 LTR MaLR -195 189 1 1 1979 446 304 27 68 chr1 182842414 182842517 -14352915 - B1F SINE Alu -54 95 1 1 1979 201 271 200 40 chr1 182842521 182842621 -14352811 - MIRm SINE MIR -123 153 38 1 1979 495 0 0 0 chr1 182843643 182843698 -14351734 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1 1979 261 247 82 41 chr1 182843756 182843853 -14351579 - PB1D10 SINE Alu -7 110 10 1 1979 2217 94 20 40 chr1 182844483 182844778 -14350654 - ORR1A1 LTR MaLR 0 346 58 1 1979 1236 111 0 6 chr1 182844778 182844959 -14350473 - B2_Mm2 SINE B2 -14 181 2 1 1979 2217 94 20 40 chr1 182844959 182845016 -14350416 - ORR1A1 LTR MaLR -289 57 1 1 1979 953 272 32 32 chr1 182845056 182845394 -14350038 - RLTR15 LTR ERVK -16 343 6 1 1980 596 229 22 21 chr1 182845861 182846024 -14349408 + B4A SINE B4 65 233 -59 1 1980 288 280 153 7 chr1 182846024 182846168 -14349264 + B4A SINE B4 3 167 -125 1 1980 2380 179 221 15 chr1 182846311 182846918 -14348514 - RMER19A LTR ERVK -5 732 1 1 1980 415 246 26 26 chr1 182847098 182847215 -14348217 - RLTR23 LTR ERV1 0 430 314 1 1980 1364 63 26 26 chr1 182847565 182847760 -14347672 + B2_Mm2 SINE B2 1 195 0 1 1980 703 198 0 0 chr1 182847829 182847945 -14347487 + PB1D9 SINE Alu 3 118 -2 1 1980 1206 104 0 86 chr1 182848136 182848310 -14347122 + B2_Mm2 SINE B2 2 164 -31 1 1980 1183 48 0 0 chr1 182848310 182848457 -14346975 + B1_Mm SINE Alu 1 147 0 1 1980 1206 104 0 86 chr1 182848457 182848492 -14346940 + B2_Mm2 SINE B2 165 193 -2 1 1980 441 73 15 0 chr1 182848547 182848615 -14346817 + B2_Mm1t SINE B2 111 179 -14 1 1980 294 104 365 18 chr1 182848662 182848769 -14346663 + B2_Mm2 SINE B2 47 190 -5 1 1980 197 269 58 29 chr1 182848804 182848873 -14346559 + L2a LINE L2 3346 3416 -10 1 1980 224 309 0 0 chr1 182848956 182849011 -14346421 + polypyrimidine Low_complexity Low_complexity 4 58 0 1 1980 286 143 56 19 chr1 182850162 182850177 -14345255 + polypyrimidine Low_complexity Low_complexity 100 114 0 1 1980 1002 62 0 0 chr1 182850177 182850307 -14345125 + (TTC)n Simple_repeat Simple_repeat 3 132 0 1 1980 286 143 56 19 chr1 182850307 182850398 -14345034 + CT-rich Low_complexity Low_complexity 4 99 0 1 1980 858 56 159 0 chr1 182850406 182850532 -14344900 - B1_Mus1 SINE Alu 0 148 3 1 1980 650 165 145 47 chr1 182851071 182851243 -14344189 + B3 SINE B2 1 189 -27 1 1980 216 339 8 16 chr1 182851457 182851580 -14343852 + (CA)n Simple_repeat Simple_repeat 1 122 0 1 1980 279 0 0 0 chr1 182852108 182852139 -14343293 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1980 320 246 71 127 chr1 182852161 182852287 -14343145 - RSINE1 SINE B4 -35 130 12 1 1980 294 288 0 0 chr1 182852312 182852378 -14343054 - B4A SINE B4 -146 146 81 1 1980 328 186 14 28 chr1 182853202 182853274 -14342158 - L1MC LINE L1 -1037 5109 5039 1 1980 1061 82 0 7 chr1 182853296 182853444 -14341988 - B1_Mus2 SINE Alu 0 147 1 1 1980 373 272 42 42 chr1 182853450 182853569 -14341863 - PB1D9 SINE Alu -1 119 1 1 1980 613 278 47 0 chr1 182853600 182853769 -14341663 + B3 SINE B2 2 178 -38 1 1980 927 153 88 0 chr1 182853786 182853956 -14341476 - B2_Mm2 SINE B2 -9 186 2 1 1980 850 192 198 0 chr1 182853992 182854169 -14341263 + B3 SINE B2 1 212 -4 1 1980 546 275 8 0 chr1 182854174 182854305 -14341127 - B1_Mur1 SINE Alu -13 136 5 1 1980 612 238 0 58 chr1 182854307 182854463 -14340969 - ID_B1 SINE B4 0 224 78 1 1980 1664 16 0 0 chr1 182855693 182855886 -14339546 - B2_Mm1a SINE B2 0 193 1 1 1980 189 319 0 0 chr1 182855957 182856004 -14339428 - MIR SINE MIR -103 159 113 1 1980 189 0 0 0 chr1 182856311 182856332 -14339100 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 1 1980 455 257 19 0 chr1 182857161 182857266 -14338166 + B1F SINE Alu 2 108 -41 1 1980 297 167 0 0 chr1 182857286 182857340 -14338092 + GA-rich Low_complexity Low_complexity 2 55 0 1 1980 570 271 0 0 chr1 182857373 182857513 -14337919 + B1F SINE Alu 1 140 -9 1 1980 279 0 0 0 chr1 182857550 182857581 -14337851 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1980 638 216 32 7 chr1 182857965 182858119 -14337313 - RCHARR1 DNA MER1_type -1 973 816 1 1980 348 43 0 0 chr1 182858660 182858706 -14336726 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 1 1980 21 0 0 0 chr1 182858982 182859003 -14336429 + AT_rich Low_complexity Low_complexity 1 21 0 1 1980 1148 55 7 0 chr1 182859003 182859149 -14336283 + B1_Mus2 SINE Alu 1 147 0 1 1980 243 0 0 0 chr1 182859155 182859182 -14336250 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 1 1980 243 0 0 0 chr1 182859206 182859237 -14336195 + PB1D9 SINE Alu 1 31 -89 1 1980 499 250 215 0 chr1 182859240 182859384 -14336048 + ID_B1 SINE B4 34 208 -16 1 1980 293 158 12 0 chr1 182859437 182859519 -14335913 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1 1980 21 36 0 0 chr1 182859789 182859817 -14335615 + AT_rich Low_complexity Low_complexity 1 28 0 1 1980 279 218 14 7 chr1 182860342 182860490 -14334942 + (TG)n Simple_repeat Simple_repeat 1 149 0 1 1980 322 213 7 7 chr1 182860535 182860686 -14334746 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 1980 626 177 0 17 chr1 182860742 182860920 -14334512 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1980 192 135 0 0 chr1 182860979 182861016 -14334416 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1980 529 192 6 17 chr1 182861042 182861222 -14334210 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1980 488 305 132 47 chr1 182861324 182861849 -14333583 + Lx8 LINE L1 5428 6021 -279 1 1980 394 314 0 0 chr1 182861914 182862016 -14333416 + RSINE1 SINE B4 3 104 -61 1 1980 971 131 0 7 chr1 182862020 182862166 -14333266 - B1_Mur4 SINE Alu -1 149 5 1 1980 346 235 25 0 chr1 182862427 182862498 -14332934 + ID4_ SINE ID 1 73 -10 1 1980 453 19 0 0 chr1 182862498 182862552 -14332880 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1980 41 31 0 15 chr1 182862670 182862702 -14332730 + AT_rich Low_complexity Low_complexity 1 32 0 1 1980 422 128 0 0 chr1 182862702 182862780 -14332652 + L1_Mus2 LINE L1 6488 6565 -1 1 1980 41 31 0 15 chr1 182862780 182862813 -14332619 + AT_rich Low_complexity Low_complexity 1 33 0 1 1980 401 53 0 18 chr1 182862993 182863050 -14332382 + (GAAAA)n Simple_repeat Simple_repeat 2 57 0 1 1980 190 200 0 0 chr1 182863107 182863142 -14332290 - MIRb SINE MIR -8 260 226 1 1980 211 295 0 32 chr1 182863114 182863177 -14332255 - L2b LINE L2 -19 3356 3296 1 1980 238 250 28 42 chr1 182864838 182864909 -14330523 - ID SINE ID -141 83 14 1 1980 255 200 0 104 chr1 182864852 182864919 -14330513 - tRNA-Ala-GCA tRNA tRNA -14 61 2 1 1980 348 43 0 0 chr1 182865895 182865941 -14329491 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1980 558 0 0 0 chr1 182866930 182866992 -14328440 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1980 405 0 0 0 chr1 182868580 182868625 -14326807 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1980 603 209 97 0 chr1 182868899 182869033 -14326399 + B1_Mur1 SINE Alu 2 148 -1 1 1980 1413 28 67 0 chr1 182869171 182869349 -14326083 - B2_Mm1a SINE B2 -3 190 1 1 1980 1255 70 0 6 chr1 182869644 182869817 -14325615 - B2_Mm2 SINE B2 -22 173 2 1 1980 189 0 0 0 chr1 182869968 182869989 -14325443 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 1980 885 144 7 7 chr1 182870052 182870199 -14325233 - B1_Mus1 SINE Alu -1 147 1 1 1980 878 145 7 14 chr1 182870227 182870374 -14325058 - B1_Mus1 SINE Alu -2 146 1 1 1980 831 155 0 0 chr1 182870401 182870810 -14324622 + (TG)n Simple_repeat Simple_repeat 1 409 0 1 1980 367 264 25 89 chr1 182870846 182870870 -14324562 - RSINE1 SINE B4 -1 164 142 1 1980 291 113 0 0 chr1 182870870 182870923 -14324509 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1980 367 264 25 89 chr1 182870923 182871056 -14324376 - RSINE1 SINE B4 -24 141 17 1 1980 408 252 102 54 chr1 182871060 182871207 -14324225 - ID_B1 SINE B4 -69 155 2 1 1980 31 0 0 0 chr1 182872657 182872688 -14322744 + GC_rich Low_complexity Low_complexity 1 31 0 1 1980 593 190 0 33 chr1 182873940 182874060 -14321372 - PB1D9 SINE Alu 0 120 5 1 1980 254 281 109 33 chr1 182875111 182875124 -14320308 - B1F1 SINE Alu -29 120 22 1 1980 313 279 89 0 chr1 182875124 182875203 -14320229 - ID_B1 SINE B4 -36 188 103 1 1980 315 0 0 0 chr1 182875485 182875520 -14319912 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1980 369 0 0 0 chr1 182877400 182877441 -14317991 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1980 2005 115 7 49 chr1 182877672 182878020 -14317412 - MT2C_Mm LTR ERVL -156 319 1 1 1980 246 280 57 48 chr1 182878540 182878645 -14316787 + B4A SINE B4 82 187 -105 1 1980 469 222 18 18 chr1 182878554 182878664 -14316768 + PB1 SINE Alu 14 123 -4 1 1980 272 104 0 40 chr1 182879119 182879169 -14316263 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1 1980 339 336 62 0 chr1 182880136 182880249 -14315183 + B4A SINE B4 171 290 -2 1 1980 272 48 24 0 chr1 182880265 182880307 -14315125 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1980 450 101 0 0 chr1 182880393 182880462 -14314970 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 1 1980 333 189 9 107 chr1 182880466 182880574 -14314858 - PB1D10 SINE Alu -27 100 7 1 1980 280 249 13 4 chr1 182880584 182880672 -14314760 + Kanga1 DNA Tc2 1641 1727 -18 1 1980 1218 21 0 0 chr1 182880692 182880837 -14314595 - B1_Mus2 SINE Alu 0 147 3 1 1980 1307 89 16 16 chr1 182880977 182881171 -14314261 - B2_Mm2 SINE B2 -1 194 1 1 1980 681 101 0 0 chr1 182881205 182881304 -14314128 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 1 1980 284 228 114 0 chr1 182881321 182881435 -14313997 - Lx5 LINE L1 0 7050 6924 1 1980 1386 120 19 0 chr1 182881445 182881653 -14313779 - B3 SINE B2 -4 212 1 1 1980 307 343 91 0 chr1 182881665 182881840 -14313592 - SSU-rRNA_Hsa rRNA rRNA -1293 576 386 1 1980 327 329 154 16 chr1 182882530 182882761 -14312671 + L2c LINE L2 3123 3385 -2 1 1980 237 233 75 115 chr1 182884685 182884878 -14310554 + MIR SINE MIR 19 212 -56 1 1980 351 240 188 0 chr1 182885330 182885426 -14310006 - PB1D10 SINE Alu -3 114 1 1 1980 810 31 0 0 chr1 182885439 182885536 -14309896 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 1 1980 1046 94 0 0 chr1 182885536 182885674 -14309758 - B1_Mus1 SINE Alu -10 138 1 1 1980 399 89 0 0 chr1 182886817 182886873 -14308559 + (CCA)n Simple_repeat Simple_repeat 1 56 0 1 1980 267 306 51 77 chr1 182886886 182887003 -14308429 - PB1D10 SINE Alu -3 114 1 1 1980 294 312 73 0 chr1 182886909 182887005 -14308427 - ID_B1 SINE B4 -43 181 79 1 1980 1289 234 137 11 chr1 182887228 182887586 -14307846 - MTD LTR MaLR -2 417 15 1 1980 1183 99 10 77 chr1 182887600 182887808 -14307624 + B2_Mm2 SINE B2 2 195 0 1 1980 852 85 0 0 chr1 182888398 182888516 -14306916 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 1980 264 328 69 120 chr1 182888820 182889153 -14306279 + MamRep434 DNA TcMar 52 367 -59 1 1980 328 286 3 11 chr1 182889574 182889667 -14305765 + MIR SINE MIR 29 124 -144 1 1980 477 122 0 0 chr1 182889689 182889763 -14305669 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1980 831 112 0 0 chr1 182889854 182889979 -14305453 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1980 236 239 26 66 chr1 182890323 182890399 -14305033 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 1 1980 495 0 0 0 chr1 182891082 182891137 -14304295 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1980 233 250 125 45 chr1 182892097 182892185 -14303247 + MIRc SINE MIR 105 199 -69 1 1980 541 203 48 16 chr1 182892218 182892343 -14303089 - B1F1 SINE Alu 0 149 21 1 1980 34 42 0 0 chr1 182892703 182892751 -14302681 + AT_rich Low_complexity Low_complexity 1 48 0 1 1980 681 152 78 28 chr1 182892757 182892847 -14302585 - B1_Mur2 SINE Alu 0 149 59 1 1980 198 0 0 0 chr1 182892847 182892869 -14302563 + (CCTG)n Simple_repeat Simple_repeat 2 23 0 1 1980 681 152 78 28 chr1 182892869 182892920 -14302512 - B1_Mur2 SINE Alu -91 58 3 1 1980 187 211 57 19 chr1 182892920 182892966 -14302466 - L2a LINE L2 -8 3418 3370 1 1980 516 218 227 39 chr1 182893366 182893464 -14301968 - B4A SINE B4 -18 274 148 1 1980 180 0 0 0 chr1 182893464 182893484 -14301948 + (CCCCG)n Simple_repeat Simple_repeat 1 20 0 1 1980 516 218 227 39 chr1 182893484 182893614 -14301818 - B4A SINE B4 -145 147 3 1 1980 562 220 0 0 chr1 182893829 182893938 -14301494 + PB1D7 SINE Alu 5 113 -7 1 1980 451 275 80 32 chr1 182893949 182894137 -14301295 + B3A SINE B2 2 198 0 1 1980 515 90 13 0 chr1 182894207 182894285 -14301147 + (CATA)n Simple_repeat Simple_repeat 2 80 0 1 1980 1350 135 9 0 chr1 182894358 182894580 -14300852 + URR1A DNA MER1_type 1 224 -2 1 1980 295 304 73 7 chr1 182894790 182894926 -14300506 - Tigger13a DNA MER2_type -92 679 535 1 1980 1264 88 16 6 chr1 182894930 182895113 -14300319 - B2_Mm2 SINE B2 -10 185 1 1 1980 234 0 0 0 chr1 182896307 182896333 -14299099 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1980 1076 69 7 0 chr1 182896333 182896477 -14298955 + B1_Mus1 SINE Alu 2 146 -2 1 1980 244 180 16 16 chr1 182896478 182896505 -14298927 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1980 210 71 0 0 chr1 182896505 182896533 -14298899 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1980 244 180 16 16 chr1 182896533 182896567 -14298865 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1 1980 251 352 68 0 chr1 182897335 182897423 -14298009 - MIR SINE MIR -93 169 76 1 1980 282 317 14 14 chr1 182898088 182898232 -14297200 + L2 LINE L2 2548 2691 -728 1 1980 406 247 11 0 chr1 182898596 182898689 -14296743 - PB1D10 SINE Alu 0 117 24 1 1980 943 265 50 100 chr1 182899260 182899659 -14295773 - MTEa LTR MaLR 0 379 1 1 1980 743 178 0 37 chr1 182900741 182900928 -14294504 + CT-rich Low_complexity Low_complexity 1 180 0 1 1980 640 179 0 95 chr1 182900943 182901091 -14294341 - B1F2 SINE Alu -1 148 15 1 1980 546 321 64 23 chr1 182901102 182901322 -14294110 - B4A SINE B4 -62 230 2 1 1980 347 202 12 0 chr1 182901324 182901408 -14294024 + (CAT)n Simple_repeat Simple_repeat 2 86 0 1 1980 275 333 34 56 chr1 182901409 182901540 -14293892 - B1F1 SINE Alu -24 125 1 1 1980 583 233 55 28 chr1 182901576 182901757 -14293675 + B3A SINE B2 3 188 -10 1 1980 446 143 122 1 chr1 182901782 182901871 -14293561 - PB1D9 SINE Alu -5 115 17 1 1980 1041 91 106 28 chr1 182901894 182902074 -14293358 - B2_Mm2 SINE B2 0 195 2 1 1980 242 250 0 0 chr1 182903081 182903133 -14292299 + C-rich Low_complexity Low_complexity 1 52 0 1 1980 671 187 11 1 chr1 182903643 182903783 -14291649 + B1_Mus1 SINE Alu 1 149 -1 1 1980 228 179 0 67 chr1 182903945 182904005 -14291427 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 1 1980 196 294 73 114 chr1 182904008 182904131 -14291301 + L4 LINE RTE 1696 1813 -216 1 1980 210 174 0 0 chr1 182908272 182908318 -14287114 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 1980 843 131 20 20 chr1 182909521 182909682 -14285750 - RLTR1B LTR ERV1 0 512 290 1 1980 1392 143 23 82 chr1 182909908 182910250 -14285182 - RLTRETN_Mm LTR ERVK 0 322 1 1 1980 758 341 77 39 chr1 182911855 182912294 -14283138 + MER44B DNA MER2_type 83 538 -12 1 1980 381 192 38 57 chr1 182912655 182912777 -14282655 + L1M2 LINE L1 5515 5646 -654 1 1980 225 103 0 0 chr1 182912815 182912854 -14282578 + B1_Mur4 SINE Alu 106 144 -6 1 1980 317 164 0 29 chr1 182912860 182912929 -14282503 + GA-rich Low_complexity Low_complexity 1 67 0 1 1980 291 200 0 0 chr1 182913329 182913389 -14282043 - RLTR22_Mus LTR ERVK -1015 793 734 1 1980 3387 66 49 4 chr1 182913392 182913783 -14281649 + L1VL4 LINE L1 397 786 -5516 1 1980 216 0 0 0 chr1 182913783 182913807 -14281625 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1980 3387 66 49 4 chr1 182913807 182913903 -14281529 + L1VL4 LINE L1 787 904 -5398 1 1980 1490 283 15 77 chr1 182913903 182914553 -14280879 + MYSERV-int LTR ERVK 4600 5209 -1341 1 1980 284 250 32 111 chr1 182914554 182914680 -14280752 + RMER4B LTR ERVK 442 557 -28 1 1980 4765 212 46 18 chr1 182914680 182915867 -14279565 + MYSERV-int LTR ERVK 5328 6548 -2 1 1980 773 251 95 125 chr1 182915894 182916104 -14279328 + RLTR12B LTR ERVK 47 250 -278 1 1980 279 0 0 0 chr1 182916104 182916135 -14279297 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1980 469 0 16 16 chr1 182916137 182916199 -14279233 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1980 773 251 95 125 chr1 182916199 182916449 -14278983 + RLTR12B LTR ERVK 251 496 -32 1 1980 354 123 0 0 chr1 182916484 182916541 -14278891 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1980 809 214 120 0 chr1 182916612 182916804 -14278628 - B3 SINE B2 0 216 2 1 1980 335 296 125 5 chr1 182916805 182916948 -14278484 - L1M2 LINE L1 -1732 4411 4245 1 1980 938 225 33 9 chr1 182916948 182917159 -14278273 - B3 SINE B2 0 216 1 1 1980 335 296 125 5 chr1 182917159 182917239 -14278193 - L1M2 LINE L1 -1899 4244 4162 1 1980 386 288 127 5 chr1 182917393 182917613 -14277819 + Tigger7 DNA MER2_type 282 528 -1963 1 1980 1105 58 0 0 chr1 182917622 182917759 -14277673 + B1_Mm SINE Alu 1 137 -10 1 1980 180 0 0 0 chr1 182918285 182918305 -14277127 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 1 1980 1284 158 18 0 chr1 182923018 182923240 -14272192 + URR1A DNA MER1_type 1 226 0 1 1980 240 294 88 0 chr1 182923257 182923359 -14272073 + LTR37A LTR ERV1 72 182 -244 1 1980 282 238 80 71 chr1 182923446 182923559 -14271873 - PB1 SINE Alu -3 124 6 1 1980 465 281 9 0 chr1 182923736 182923850 -14271582 - B1F2 SINE Alu -17 132 18 1 1980 770 49 0 10 chr1 182924261 182924365 -14271067 + (GGAGA)n Simple_repeat Simple_repeat 5 107 0 1 1980 1011 124 0 192 chr1 182925205 182925405 -14270027 - B2_Mm2 SINE B2 0 195 41 1 1980 1091 68 0 20 chr1 182925405 182925555 -14269877 - B1_Mus1 SINE Alu 0 148 2 1 1980 1011 124 0 192 chr1 182925555 182925594 -14269838 - B2_Mm2 SINE B2 -155 40 2 1 1980 425 229 54 27 chr1 182925617 182925729 -14269703 - RLTR42-int LTR ERVK -4181 1341 1227 1 1980 204 239 22 43 chr1 182926559 182926651 -14268781 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 1 1980 417 272 184 0 chr1 182926690 182926837 -14268595 - Lx8 LINE L1 -123 7350 7177 1 1980 219 284 0 0 chr1 182926971 182927034 -14268398 + BC1_Mm scRNA scRNA 10 72 -11 1 1980 471 87 0 0 chr1 182927034 182927103 -14268329 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1980 684 250 102 0 chr1 182927547 182927743 -14267689 - B3 SINE B2 0 216 1 1 1980 237 330 8 114 chr1 182928531 182928654 -14266778 - ID_B1 SINE B4 -78 146 37 1 1980 1088 289 50 11 chr1 182932222 182932582 -14262850 + MTEa LTR MaLR 1 374 -5 1 1980 242 311 14 0 chr1 182933233 182933307 -14262125 - PB1D7 SINE Alu -9 111 37 1 1980 446 329 4 11 chr1 182933715 182933940 -14261492 - L1MB8 LINE L1 -1 6177 5957 1 1980 360 118 0 0 chr1 182934908 182934976 -14260456 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1980 207 0 0 0 chr1 182935154 182935177 -14260255 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1980 256 292 79 0 chr1 182935797 182935880 -14259552 + MER44B DNA MER2_type 36 125 -425 1 1980 430 276 9 0 chr1 182935880 182935985 -14259447 + RSINE1 SINE B4 4 109 -56 1 1980 342 388 8 0 chr1 182936067 182936188 -14259244 + MER44B DNA MER2_type 139 260 -290 1 1980 756 147 0 0 chr1 182936652 182936788 -14258644 + (CCAA)n Simple_repeat Simple_repeat 2 137 0 1 1980 204 307 102 0 chr1 182937834 182937922 -14257510 + MIRb SINE MIR 71 167 -101 1 1980 1131 106 53 0 chr1 182938740 182938910 -14256522 + B2_Mm1t SINE B2 1 179 -14 1 1980 296 127 365 22 chr1 182938957 182939061 -14256371 + B2_Mm2 SINE B2 47 184 -11 1 1980 238 155 0 17 chr1 182939096 182939155 -14256277 + B2_Mm2 SINE B2 138 195 0 1 1980 445 42 14 27 chr1 182939201 182939274 -14256158 + (CAAAA)n Simple_repeat Simple_repeat 3 74 0 1 1980 280 200 114 0 chr1 182939309 182939379 -14256053 + B3 SINE B2 3 80 -136 1 1980 216 0 0 0 chr1 182939384 182939408 -14256024 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1980 468 0 0 0 chr1 182939928 182939980 -14255452 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1980 325 172 0 17 chr1 182941930 182941989 -14253443 + tRNA-Ala-GCY_ tRNA tRNA 3 60 -15 1 1980 313 231 63 13 chr1 182941989 182942003 -14253429 + ID4_ SINE ID 21 83 0 1 1980 343 303 107 96 chr1 182942553 182942947 -14252485 - RMER10A LTR ERVL -27 415 18 1 1980 244 264 27 27 chr1 182943230 182943304 -14252128 + RMER10A LTR ERVL 344 417 -25 1 1980 227 358 42 35 chr1 182943396 182943538 -14251894 - MER57C2 LTR ERV1 -1 433 291 1 1980 2172 140 25 6 chr1 182944104 182944464 -14250968 - ORR1B2 LTR MaLR 0 367 1 1 1980 417 275 102 42 chr1 182944594 182944761 -14250671 + RMER15 LTR ERVL 368 544 -31 1 1980 216 143 100 20 chr1 182946340 182946390 -14249042 + L2 LINE L2 3013 3066 -353 1 1980 267 216 67 13 chr1 182947939 182948014 -14247418 + ID4_ SINE ID 5 83 0 1 1980 860 128 7 48 chr1 182948758 182948905 -14246527 + B1_Mus1 SINE Alu 2 142 -6 1 1980 1344 69 11 0 chr1 182948913 182949087 -14246345 + B2_Mm2 SINE B2 1 176 -19 1 1980 314 141 0 27 chr1 182949100 182949173 -14246259 + A-rich Low_complexity Low_complexity 2 72 0 1 1980 1466 204 73 40 chr1 182949235 182949530 -14245902 - MTD LTR MaLR 0 419 112 1 1980 1543 156 75 26 chr1 182949530 182949919 -14245513 + RMER17C LTR ERVK 2 409 -1 1 1980 1466 204 73 40 chr1 182949919 182949950 -14245482 - MTD LTR MaLR -308 111 82 1 1980 1246 68 17 0 chr1 182949952 182950129 -14245303 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1980 353 294 98 88 chr1 182950541 182950940 -14244492 + RMER10A LTR ERVL 12 414 -28 1 1980 240 313 15 15 chr1 182951082 182951150 -14244282 + PB1D10 SINE Alu 12 79 -38 1 1980 259 293 33 41 chr1 182951185 182951306 -14244126 + PB1D7 SINE Alu 1 120 0 1 1980 25 0 0 0 chr1 182951316 182951341 -14244091 + AT_rich Low_complexity Low_complexity 1 25 0 1 1980 784 164 0 8 chr1 182951351 182951480 -14243952 - B3 SINE B2 -83 133 6 1 1980 304 335 108 54 chr1 182951575 182951815 -14243617 + Charlie1a DNA MER1_type 964 1216 -239 1 1980 833 151 0 0 chr1 182951886 182952012 -14243420 + B1_Mur4 SINE Alu 25 150 0 1 1980 1442 78 16 5 chr1 182952016 182952209 -14243223 + B2_Mm2 SINE B2 1 195 0 1 1980 335 91 0 0 chr1 182953167 182953211 -14242221 + HAL1-3A_ME LINE L1 1968 2011 -847 1 1980 353 297 0 0 chr1 182953220 182953338 -14242094 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 1980 245 356 9 28 chr1 182953341 182953448 -14241984 - ID_B1 SINE B4 -117 107 3 1 1980 789 253 76 11 chr1 182953515 182953699 -14241733 + B3 SINE B2 8 203 -13 1 1980 230 320 12 37 chr1 182953833 182953914 -14241518 + ID4 SINE ID 1 79 -4 1 1980 822 139 3 0 chr1 182954243 182954380 -14241052 + B1_Mus1 SINE Alu 10 149 0 1 1980 1171 122 480 4 chr1 182954475 182954754 -14240678 - RLTR25B LTR ERVK -19 1009 598 1 1980 1180 102 12 0 chr1 182954760 182954927 -14240505 + B2_Mm1t SINE B2 17 185 -8 1 1980 340 0 0 0 chr1 182954926 182954964 -14240468 - RLTR25B LTR ERVK -422 681 644 1 1980 1183 106 31 36 chr1 182954958 182955154 -14240278 - B2_Mm2 SINE B2 0 195 1 1 1980 2308 129 3 39 chr1 182955154 182955607 -14239825 - RLTR25B LTR ERVK -570 533 133 1 1980 285 198 0 0 chr1 182955638 182955729 -14239703 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1980 739 199 38 27 chr1 182956044 182956074 -14239358 + ETnERV3-int LTR ERVK 3346 3376 -2432 1 1980 1633 176 30 3 chr1 182956074 182956371 -14239061 - Lx5 LINE L1 -4 7046 6742 1 1980 2856 174 13 20 chr1 182956371 182956910 -14238522 + ETnERV2-int LTR ERVK 2305 2839 -2567 1 1980 10235 92 2 24 chr1 182956933 182957358 -14238074 + L1_Mus1 LINE L1 4469 4863 -1020 1 1980 3583 57 0 16 chr1 182957358 182957806 -14237626 - L1_Mus1 LINE L1 -1 6566 6126 1 1980 10235 64 1 11 chr1 182957806 182959512 -14235920 + L1_Mus1 LINE L1 4864 6567 0 1 1980 2348 246 28 30 chr1 182959541 182960190 -14235242 + ETnERV2-int LTR ERVK 4083 4477 -2929 1 1980 5597 121 19 50 chr1 182960190 182961121 -14234311 + RLTR13D6 LTR ERVK 1 902 0 1 1980 2348 222 18 19 chr1 182961121 182961190 -14234242 + ETnERV2-int LTR ERVK 4478 4534 -2872 1 1980 233 184 0 0 chr1 182961212 182961250 -14234182 - RLTR13D3 LTR ERVK -1076 38 1 1 1980 3509 185 32 5 chr1 182961250 182961901 -14233531 + ETnERV2-int LTR ERVK 5125 5793 -1613 1 1980 921 179 75 6 chr1 182961947 182961965 -14233467 + RMER16-int LTR ERVK 3791 3808 -1598 1 1980 225 0 0 0 chr1 182961965 182961990 -14233442 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1980 921 179 75 6 chr1 182961990 182962145 -14233287 + RMER16-int LTR ERVK 3809 3975 -1431 1 1980 533 275 0 0 chr1 182963038 182963169 -14232263 + ETnERV2-int LTR ERVK 6489 6619 -300 1 1980 458 314 12 12 chr1 182963169 182963189 -14232243 + RodERV21-int LTR ERV1 4450 4563 -428 1 1980 1717 210 3 6 chr1 182963425 182963737 -14231695 + ETnERV2-int LTR ERVK 6646 6956 -450 1 1980 198 268 46 58 chr1 182963737 182963824 -14231608 + L2c LINE L2 3068 3153 -234 1 1980 447 229 31 50 chr1 182964008 182964169 -14231263 + RLTR43A LTR ERVK 206 363 -1 1 1980 936 43 0 0 chr1 182964169 182964286 -14231146 + (TCC)n Simple_repeat Simple_repeat 3 119 0 1 1980 436 255 99 25 chr1 182964317 182964478 -14230954 - L1M1 LINE L1 -616 5687 5515 1 1980 1505 48 0 0 chr1 182964587 182964773 -14230659 - B2_Mm1t SINE B2 0 193 8 1 1980 885 319 74 54 chr1 182965022 182965469 -14229963 - MER44B DNA MER2_type -12 538 83 1 1980 216 135 0 0 chr1 182966713 182966750 -14228682 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 1 1980 1322 57 102 6 chr1 182967097 182967114 -14228318 - B2_Mm2 SINE B2 0 195 179 1 1980 258 32 0 0 chr1 182967114 182967145 -14228287 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1980 1322 57 102 6 chr1 182967145 182967304 -14228128 - B2_Mm2 SINE B2 -17 178 3 1 1980 2135 113 46 26 chr1 182967411 182967757 -14227675 - Lx LINE L1 0 6654 6302 1 1980 252 0 0 0 chr1 182968118 182968146 -14227286 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1980 7927 60 35 2 chr1 182968289 182969279 -14226153 - RLTR13D5 LTR ERVK 0 1023 1 1 1980 340 323 79 58 chr1 182970334 182970574 -14224858 - LTR33A_ LTR ERVL -286 245 1 1 1980 1052 351 61 37 chr1 182970689 182970779 -14224653 + L1M4b LINE L1 34 117 -7217 1 1980 1003 160 129 10 chr1 182970779 182970981 -14224451 - URR1A DNA MER1_type 0 226 1 1 1980 1052 351 61 37 chr1 182970981 182971594 -14223838 + L1M4b LINE L1 118 753 -6581 1 1980 15111 65 32 3 chr1 182971589 182974215 -14221217 + L1VL2 LINE L1 292 2989 -626 1 1980 333 284 108 14 chr1 182974314 182974528 -14220904 + L1M4b LINE L1 738 971 -6363 1 1980 306 0 0 0 chr1 182975580 182975614 -14219818 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1980 3212 120 69 0 chr1 182975621 182976087 -14219345 + RLTR19 LTR ERVK 2 499 0 1 1980 307 309 15 55 chr1 182976115 182976295 -14219137 - MLT1A1 LTR MaLR -53 355 169 1 1980 623 162 126 37 chr1 182976236 182976371 -14219061 - B1_Mus2 SINE Alu 0 147 1 1 1980 604 226 9 0 chr1 182976391 182976506 -14218926 - B1_Mur1 SINE Alu -12 137 22 1 247 228 143 0 87 chr1 182976502 182976548 -14218884 + MT2B LTR ERVL 76 117 -416 1 1981 1024 215 121 25 chr1 182976519 182976859 -14218573 + MT2B LTR ERVL 41 563 -38 1 1981 369 0 0 0 chr1 182976859 182976900 -14218532 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1981 1024 224 92 64 chr1 182976900 182976935 -14218497 + MT2B LTR ERVL 564 598 -3 1 1981 291 28 0 0 chr1 182977326 182977362 -14218070 + (CAAT)n Simple_repeat Simple_repeat 4 39 0 1 1981 494 299 197 26 chr1 182977670 182977903 -14217529 + B4A SINE B4 2 274 -18 1 1981 4373 125 111 21 chr1 182978456 182979185 -14216247 - MYSERV6-int LTR ERVK -1163 7796 7001 1 1981 3157 69 10 2 chr1 182979185 182979591 -14215841 + L1_Mus1 LINE L1 6159 6567 0 1 1981 4373 139 48 46 chr1 182979591 182980179 -14215253 - MYSERV6-int LTR ERVK -1959 7000 6413 1 1981 920 199 67 54 chr1 182980227 182980466 -14214966 - RLTR19-int LTR ERVK -5895 242 1 1 1981 1279 211 2 202 chr1 182980466 182980871 -14214561 - RLTR19A LTR ERVK 0 496 173 1 1981 976 39 100 0 chr1 182980876 182981006 -14214426 + B1_Mus1 SINE Alu 6 148 0 1 1981 491 276 55 7 chr1 182980880 182981026 -14214406 + B4A SINE B4 94 246 -46 1 1981 887 180 54 0 chr1 182981030 182981197 -14214235 - RLTR19A LTR ERVK -318 181 6 1 1981 264 310 85 17 chr1 182981559 182981677 -14213755 + B1_Mur4 SINE Alu 9 134 -16 1 1981 28 29 0 0 chr1 182981759 182981794 -14213638 + AT_rich Low_complexity Low_complexity 1 35 0 1 1981 365 167 13 0 chr1 182982449 182982527 -14212905 + CT-rich Low_complexity Low_complexity 2 80 0 1 1981 395 305 67 27 chr1 182983481 182983698 -14211734 + L1MA4 LINE L1 5596 5828 -472 1 1981 493 312 7 0 chr1 182983703 182983841 -14211591 + B4A SINE B4 6 144 -148 1 1981 2326 188 49 5 chr1 182983843 182984275 -14211157 - MT2A LTR ERVL -75 458 8 1 1981 1188 99 41 0 chr1 182984312 182984483 -14210949 - B2_Mm2 SINE B2 -14 181 4 1 1981 1035 142 265 22 chr1 182985884 182986154 -14209278 - ORR1C2 LTR MaLR 0 384 1 1 1981 225 0 0 0 chr1 182986351 182986376 -14209056 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1981 793 256 33 28 chr1 182986915 182987128 -14208304 - B3 SINE B2 0 216 3 1 1981 23 0 0 0 chr1 182987131 182987154 -14208278 + AT_rich Low_complexity Low_complexity 1 23 0 1 1981 339 262 12 0 chr1 182987562 182987642 -14207790 - ID4_ SINE ID -1 82 2 1 1981 744 220 14 0 chr1 182987689 182987830 -14207602 + B1_Mus2 SINE Alu 5 147 0 1 1981 468 77 0 0 chr1 182987851 182987916 -14207516 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1981 337 241 106 63 chr1 182987916 182988058 -14207374 - RLTR43A LTR ERVK -3 361 214 1 1981 459 0 0 0 chr1 182988352 182988403 -14207029 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1981 22 0 0 0 chr1 182988504 182988526 -14206906 + AT_rich Low_complexity Low_complexity 1 22 0 1 1981 342 0 0 0 chr1 182988576 182988614 -14206818 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1981 554 287 22 14 chr1 182988621 182988759 -14206673 - RSINE1 SINE B4 -25 140 2 1 1981 1399 132 118 12 chr1 182989058 182989312 -14206120 - RMER1B Other Other -2 1064 784 1 1981 883 245 21 11 chr1 182989331 182989521 -14205911 - RMER1A Other Other -622 408 217 1 1981 1708 251 43 148 chr1 182990040 182990914 -14204518 + RMER12 LTR ERVK 1 783 -539 1 1981 945 201 126 54 chr1 182990881 182990920 -14204512 + RMER12 LTR ERVK 958 1006 -316 1 1981 789 41 0 0 chr1 182990920 182991017 -14204415 + (TCCCC)n Simple_repeat Simple_repeat 5 101 0 1 1981 945 201 126 54 chr1 182991017 182991271 -14204161 + RMER12 LTR ERVK 1007 1271 -51 1 1981 1292 91 26 11 chr1 182991655 182991844 -14203588 - B2_Mm1t SINE B2 0 193 2 1 1981 486 0 0 0 chr1 182991869 182991923 -14203509 + (TTG)n Simple_repeat Simple_repeat 1 54 0 1 1981 268 297 54 11 chr1 182992426 182992518 -14202914 + RLTR19-int LTR ERVK 4137 4232 -1905 1 1981 1017 145 41 0 chr1 182992726 182992898 -14202534 + B2_Mm1t SINE B2 1 179 -14 1 1981 202 132 26 0 chr1 182992995 182993033 -14202399 + A-rich Low_complexity Low_complexity 6 44 0 1 1981 240 284 147 0 chr1 182994635 182994737 -14200695 + PB1D7 SINE Alu 2 118 -2 1 1981 231 61 0 0 chr1 182995272 182995305 -14200127 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1981 1269 41 0 0 chr1 182995305 182995452 -14199980 - B1_Mus2 SINE Alu 0 147 1 1 1981 21 57 0 0 chr1 182995452 182995487 -14199945 + AT_rich Low_complexity Low_complexity 1 35 0 1 1981 1562 21 15 55 chr1 182996272 182996471 -14198961 + B2_Mm1a SINE B2 2 192 -1 1 1981 444 324 88 67 chr1 182996537 182997013 -14198419 - L1MC5 LINE L1 -235 7726 7241 1 1981 477 0 0 0 chr1 182997920 182997973 -14197459 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1981 223 218 0 98 chr1 182998766 182998827 -14196605 - ID SINE ID -148 76 22 1 1981 230 198 105 58 chr1 182999021 182999107 -14196325 - Zaphod DNA Tip100 -3383 648 559 1 1981 798 220 109 31 chr1 183000397 183000559 -14194873 + B3 SINE B2 1 180 -36 1 1981 1242 100 0 0 chr1 183000559 183000739 -14194693 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1981 798 220 109 31 chr1 183000739 183000768 -14194664 + B3 SINE B2 181 207 -9 1 1981 894 169 7 33 chr1 183000782 183000935 -14194497 - B1_Mur3 SINE Alu 0 149 1 3 1981 380 220 176 20 chr1 183001222 183001324 -14194108 + PB1D9 SINE Alu 1 118 -2 4 1981 779 289 135 25 chr1 183001325 183001649 -14193783 + L1_Mur3 LINE L1 4975 5358 -939 5 1981 228 100 0 0 chr1 183001649 183001689 -14193743 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 6 1981 779 282 92 70 chr1 183001689 183002081 -14193351 + L1_Mur3 LINE L1 5359 5756 -541 5 1981 915 272 18 13 chr1 183002130 183002357 -14193075 + B4A SINE B4 4 231 -61 7 1981 1036 189 68 5 chr1 183002360 183002552 -14192880 + B3 SINE B2 6 209 -7 8 1981 849 223 46 51 chr1 183002759 183002976 -14192456 + B3 SINE B2 1 216 0 9 1981 579 245 34 20 chr1 183003339 183003485 -14191947 - B1_Mur3 SINE Alu 0 149 2 1 1981 1146 114 86 0 chr1 183003719 183003894 -14191538 + B2_Mm2 SINE B2 1 190 -5 1 1981 562 294 41 0 chr1 183004077 183004223 -14191209 - B4 SINE B4 -139 153 2 1 1981 560 72 19 0 chr1 183005006 183005114 -14190318 - B1_Mus2 SINE Alu -63 86 2 1 1981 693 276 83 5 chr1 183005158 183005376 -14190056 - Lx8 LINE L1 -116 7357 7123 1 1981 633 165 43 9 chr1 183005950 183006066 -14189366 - B1_Mus2 SINE Alu -27 120 1 1 1981 239 338 0 0 chr1 183006851 183006919 -14188513 - ID4_ SINE ID -13 70 3 1 1981 21 0 0 0 chr1 183007166 183007187 -14188245 + AT_rich Low_complexity Low_complexity 1 21 0 1 1981 223 250 125 0 chr1 183007349 183007405 -14188027 + PB1 SINE Alu 5 67 -60 1 1981 759 186 35 7 chr1 183008926 183009067 -14186365 + B1_Mur3 SINE Alu 5 149 0 1 1981 402 211 48 0 chr1 183009086 183009190 -14186242 + B3 SINE B2 1 149 -67 2 1981 232 246 56 153 chr1 183009501 183009645 -14185787 - RMER21B LTR ERV1 -27 815 686 2 1981 264 246 29 0 chr1 183009752 183009821 -14185611 - PB1D10 SINE Alu -5 112 42 2 1981 666 116 0 0 chr1 183010169 183010298 -14185134 + (A)n Simple_repeat Simple_repeat 1 129 0 2 1981 207 69 0 0 chr1 183010299 183010328 -14185104 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2 1981 284 284 25 0 chr1 183010341 183010422 -14185010 + ID4 SINE ID 1 83 0 2 1981 291 143 34 51 chr1 183010428 183010487 -14184945 - Lx4B LINE L1 -1401 5657 5600 2 1981 961 229 0 0 chr1 183010635 183010805 -14184627 - B3A SINE B2 -26 172 3 2 1981 654 293 70 19 chr1 183010855 183011261 -14184171 - L1_Mur3 LINE L1 -457 5423 5029 2 1981 1165 225 84 49 chr1 183011275 183011681 -14183751 - L1_Mur3 LINE L1 -1767 4113 3694 2 1981 598 232 49 0 chr1 183011702 183011844 -14183588 - B1_Mur1 SINE Alu 0 149 1 2 1981 2231 126 64 3 chr1 183011867 183012225 -14183207 + ORR1B1 LTR MaLR 1 380 -14 3 1981 1146 272 76 45 chr1 183012231 183012813 -14182619 - L1M2 LINE L1 -2424 3719 3120 3 1981 2381 162 60 8 chr1 183012996 183013395 -14182037 - MTC LTR MaLR -1 420 1 3 1981 632 260 134 10 chr1 183013415 183013609 -14181823 + ID_B1 SINE B4 2 219 -5 3 1981 258 215 17 86 chr1 183013664 183013702 -14181730 + A-rich Low_complexity Low_complexity 2 36 0 3 1981 721 204 58 0 chr1 183013702 183013839 -14181593 + B1_Mur3 SINE Alu 5 149 0 3 1981 258 215 17 86 chr1 183013839 183013917 -14181515 + A-rich Low_complexity Low_complexity 37 110 0 3 1981 234 257 388 19 chr1 183014553 183014656 -14180776 - B1F SINE Alu -6 143 3 3 1981 1603 208 113 66 chr1 183014767 183014992 -14180440 - RMER19B LTR ERVK 0 902 662 3 1981 1052 119 21 0 chr1 183014992 183015135 -14180297 + B1_Mus1 SINE Alu 3 148 0 3 1981 1603 208 113 66 chr1 183015135 183015440 -14179992 - RMER19B LTR ERVK -241 661 347 3 1981 2214 99 113 24 chr1 183015546 183015923 -14179509 - MTB_Mm LTR MaLR -3 376 1 4 1981 2890 96 321 45 chr1 183016010 183016481 -14178951 + MT2B LTR ERVL 1 601 0 4 1981 502 278 35 0 chr1 183016853 183016997 -14178435 - B1F SINE Alu 0 149 1 4 1981 854 109 65 0 chr1 183017565 183017703 -14177729 - B2_Mm2 SINE B2 -2 193 47 4 1981 570 269 8 8 chr1 183018025 183018145 -14177287 + RSINE1 SINE B4 4 123 -42 4 1981 468 0 0 0 chr1 183018152 183018204 -14177228 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1981 293 0 27 0 chr1 183018204 183018240 -14177192 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1981 25 31 0 0 chr1 183018737 183018769 -14176663 + AT_rich Low_complexity Low_complexity 1 32 0 4 1981 744 252 37 25 chr1 183018795 183018958 -14176474 - B3A SINE B2 -33 165 1 4 1981 315 0 0 0 chr1 183018993 183019028 -14176404 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1981 804 77 0 0 chr1 183019028 183019132 -14176300 - B2_Mm2 SINE B2 -51 144 41 5 1981 380 303 26 60 chr1 183019598 183019617 -14175815 + B4 SINE B4 73 157 -135 5 1981 593 256 0 0 chr1 183019617 183019738 -14175694 + B1_Mur1 SINE Alu 2 122 -27 5 1981 380 303 26 60 chr1 183019738 183019749 -14175683 + B4 SINE B4 158 218 -74 5 1981 22 0 0 0 chr1 183020052 183020074 -14175358 + AT_rich Low_complexity Low_complexity 1 22 0 5 1981 4088 60 21 25 chr1 183020449 183020966 -14174466 + L1Md_F2 LINE L1 6059 6573 -9 5 1981 310 274 39 19 chr1 183024079 183024183 -14171249 + MLT1B LTR MaLR 2 107 -283 5 1981 247 183 31 62 chr1 183024298 183024362 -14171070 + MLT1A LTR MaLR 311 372 -2 5 1981 353 352 0 0 chr1 183024887 183024995 -14170437 + PB1D10 SINE Alu 5 112 -5 5 1981 996 97 0 14 chr1 183026097 183026244 -14169188 - B2_Mm1t SINE B2 0 193 49 5 1981 738 247 36 6 chr1 183026515 183026682 -14168750 + B3A SINE B2 1 172 -26 5 1981 348 235 0 0 chr1 183026987 183027055 -14168377 - ID4 SINE ID -4 79 12 6 1981 1414 80 0 21 chr1 183027630 183027822 -14167610 + L1_Mus1 LINE L1 6380 6567 0 6 1981 204 180 19 39 chr1 183027888 183027940 -14167492 + GA-rich Low_complexity Low_complexity 3 53 0 6 1981 308 274 36 187 chr1 183027964 183028103 -14167329 + B4 SINE B4 137 254 -38 6 1981 504 0 0 0 chr1 183028167 183028223 -14167209 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1981 841 130 46 0 chr1 183028816 183028947 -14166485 + B2_Mm1t SINE B2 5 141 -52 6 1981 632 290 44 19 chr1 183029802 183029960 -14165472 + B3 SINE B2 14 175 -41 6 1981 528 285 43 14 chr1 183030009 183030148 -14165284 - RSINE1 SINE B4 -21 144 2 6 1981 514 240 65 93 chr1 183031387 183031603 -14163829 + B3 SINE B2 2 211 -5 6 1981 949 232 172 0 chr1 183031905 183032138 -14163294 + B4A SINE B4 20 292 0 6 1981 284 281 124 0 chr1 183032781 183032902 -14162530 - L1MDa LINE L1 -4710 1923 1788 7 1981 393 258 0 75 chr1 183032963 183033079 -14162353 + ID4_ SINE ID 4 104 -48 7 1981 310 312 45 9 chr1 183033554 183033664 -14161768 + PB1D7 SINE Alu 1 114 -6 7 1981 429 309 95 0 chr1 183033708 183033834 -14161598 + B3A SINE B2 2 139 -59 7 1981 354 276 61 0 chr1 183034185 183034283 -14161149 + PB1D10 SINE Alu 1 104 -13 7 1981 271 220 20 108 chr1 183034359 183034402 -14161030 - MTC LTR MaLR 0 421 381 7 1981 189 0 0 0 chr1 183034402 183034423 -14161009 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 7 1981 271 220 20 108 chr1 183034423 183034481 -14160951 - MTC LTR MaLR -41 380 329 7 1981 247 333 37 0 chr1 183034509 183034590 -14160842 - MTC LTR MaLR -244 135 52 7 1981 21 36 0 0 chr1 183034724 183034752 -14160680 + AT_rich Low_complexity Low_complexity 1 28 0 7 1981 1389 61 0 0 chr1 183034753 183034913 -14160519 + B2_Mm1a SINE B2 1 160 -33 7 1981 207 0 0 0 chr1 183034913 183034936 -14160496 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1981 1389 61 0 0 chr1 183034936 183034955 -14160477 + B2_Mm1a SINE B2 161 179 -14 7 1981 476 205 296 6 chr1 183034955 183035117 -14160315 - B3 SINE B2 -7 209 1 8 1981 977 168 0 0 chr1 183036218 183036367 -14159065 + B1_Mur4 SINE Alu 1 149 -1 8 1981 379 172 118 59 chr1 183037207 183037343 -14158089 + Lx9 LINE L1 7498 7641 -3 8 1981 272 130 56 0 chr1 183037386 183037440 -14157992 + MADE2 DNA Mariner 6 62 -18 8 1981 428 306 9 0 chr1 183037443 183037554 -14157878 + PB1D10 SINE Alu 3 114 -3 8 1981 418 265 180 45 chr1 183038143 183038388 -14157044 + B4 SINE B4 2 279 -13 8 1981 625 262 148 16 chr1 183038492 183038742 -14156690 + B4 SINE B4 10 292 0 8 1981 324 0 0 0 chr1 183038753 183038789 -14156643 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1981 955 69 131 0 chr1 183038832 183038962 -14156470 + B1_Mus1 SINE Alu 2 148 0 8 1981 197 119 24 0 chr1 183038965 183039007 -14156425 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1981 280 239 28 56 chr1 183039461 183039532 -14155900 + B1_Mus2 SINE Alu 1 69 -78 9 1981 712 201 15 22 chr1 183039776 183039913 -14155519 - ID_B1 SINE B4 -2 222 87 9 1981 362 269 155 7 chr1 183039998 183040140 -14155292 - RSINE1 SINE B4 0 165 3 9 1981 715 211 36 30 chr1 183040164 183040330 -14155102 + B3 SINE B2 2 168 -48 9 1981 228 143 0 0 chr1 183040478 183040520 -14154912 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 9 1981 325 152 12 33 chr1 183040520 183040593 -14154839 - B2_Mm2 SINE B2 -95 121 47 9 1981 1327 97 17 0 chr1 183040606 183040781 -14154651 - B2_Mm1t SINE B2 -14 179 2 9 1981 503 283 41 16 chr1 183040782 183040904 -14154528 + B1F SINE Alu 13 137 -12 9 1981 356 296 30 89 chr1 183040787 183040973 -14154459 + ID_B1 SINE B4 99 288 -4 9 1981 479 261 0 36 chr1 183041098 183041237 -14154195 + Lx5 LINE L1 6917 7050 0 9 1981 598 193 118 0 chr1 183041261 183041380 -14154052 + B1_Mur4 SINE Alu 5 137 -13 1 1981 1361 78 72 0 chr1 183041910 183042090 -14153342 + B2_Mm1t SINE B2 1 193 0 1 1981 579 276 49 7 chr1 183042711 183042853 -14152579 - B1_Mur1 SINE Alu 0 149 2 1 1981 545 338 51 55 chr1 183042977 183043212 -14152220 - B4A SINE B4 -56 236 3 1 1981 22 35 0 0 chr1 183043227 183043256 -14152176 + AT_rich Low_complexity Low_complexity 1 29 0 1 1981 999 103 7 52 chr1 183043458 183043611 -14151821 + B1_Mus2 SINE Alu 2 147 0 1 1981 835 273 34 10 chr1 183043902 183044109 -14151323 + B3 SINE B2 1 212 -4 1 1981 489 17 0 0 chr1 183045073 183045131 -14150301 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1981 847 177 46 0 chr1 183045141 183045271 -14150161 - B1_Mur4 SINE Alu -13 137 2 1 1981 935 241 24 19 chr1 183045284 183045491 -14149941 - B3 SINE B2 -7 209 2 1 1981 1536 54 22 0 chr1 183045661 183045846 -14149586 + B2_Mm2 SINE B2 1 189 -6 1 1981 859 214 107 0 chr1 183045884 183046071 -14149361 + B3 SINE B2 2 208 -8 1 1981 1210 82 7 0 chr1 183046266 183046412 -14149020 + B1_Mus2 SINE Alu 1 147 0 1 1981 237 185 0 0 chr1 183046413 183046478 -14148954 + A-rich Low_complexity Low_complexity 1 65 0 1 1981 802 249 55 25 chr1 183046572 183046742 -14148690 + B3 SINE B2 2 177 -39 1 1981 378 91 0 0 chr1 183046742 183046797 -14148635 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1981 802 249 55 25 chr1 183046797 183046828 -14148604 + B3 SINE B2 178 208 -8 1 1981 464 285 67 30 chr1 183048275 183048409 -14147023 - B1_Mur1 SINE Alu -10 139 1 1 1981 750 259 8 8 chr1 183048478 183048637 -14146795 - ID_B1 SINE B4 -48 244 82 1 1981 213 340 129 60 chr1 183048760 183048876 -14146556 - PB1 SINE Alu -3 124 1 1 1981 1638 53 0 0 chr1 183049120 183049307 -14146125 - B2_Mm1t SINE B2 -6 187 1 1 1981 247 283 0 0 chr1 183049451 183049504 -14145928 - ID_B1 SINE B4 -6 218 166 1 1981 369 0 0 0 chr1 183050352 183050393 -14145039 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1981 822 137 30 0 chr1 183051155 183051286 -14144146 + B2_Mm2 SINE B2 5 139 -56 1 1981 1221 21 43 0 chr1 183051302 183051442 -14143990 + B1_Mus2 SINE Alu 1 146 -1 1 1981 274 0 73 0 chr1 183051446 183051487 -14143945 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1981 1285 54 0 0 chr1 183051531 183051678 -14143754 + B1_Mus1 SINE Alu 1 147 -1 1 1981 1008 163 39 81 chr1 183051917 183052251 -14143181 + RMER17C LTR ERVK 83 402 -8 1 1981 386 43 87 0 chr1 183052258 183052327 -14143105 + B2_Mm2 SINE B2 117 191 -4 1 1981 284 269 0 0 chr1 183052457 183052524 -14142908 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 1 1981 351 0 0 0 chr1 183052587 183052626 -14142806 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1981 478 234 31 43 chr1 183052692 183052839 -14142593 - B1F SINE Alu 0 149 9 1 1981 285 254 54 11 chr1 183052858 183052940 -14142492 - B1F1 SINE Alu 0 150 61 1 1981 275 313 95 73 chr1 183053028 183053207 -14142225 + B3A SINE B2 9 191 -7 1 1981 789 194 22 22 chr1 183053228 183053365 -14142067 - B1_Mur1 SINE Alu -12 137 1 1 1981 960 281 70 37 chr1 183053536 183053806 -14141626 + B4 SINE B4 8 286 -6 1 1981 1341 34 0 0 chr1 183054209 183054355 -14141077 + B1_Mus2 SINE Alu 2 147 0 1 1981 215 31 31 0 chr1 183054355 183054387 -14141045 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1981 432 97 0 0 chr1 183054689 183054751 -14140681 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1981 1128 171 230 3 chr1 183055411 183055698 -14139734 + ORR1D1 LTR MaLR 23 374 0 1 1981 401 219 185 0 chr1 183055829 183055948 -14139484 + B1F2 SINE Alu 2 142 -7 1 1981 355 320 80 0 chr1 183056113 183056238 -14139194 + B1F2 SINE Alu 1 135 -14 1 1981 287 290 10 106 chr1 183056337 183056441 -14138991 + PB1D10 SINE Alu 1 94 -23 1 1981 22 35 0 0 chr1 183057266 183057295 -14138137 + AT_rich Low_complexity Low_complexity 1 29 0 1 1981 454 311 6 18 chr1 183057315 183057479 -14137953 - RSINE1 SINE B4 -2 163 2 1 1981 822 182 1 35 chr1 183057566 183057732 -14137700 + B3 SINE B2 70 215 -1 1 1981 664 194 22 36 chr1 183057739 183057878 -14137554 + B1_Mur4 SINE Alu 1 137 -13 1 1981 185 0 0 39 chr1 183057879 183057905 -14137527 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1981 298 299 102 10 chr1 183057923 183058021 -14137411 + PB1D10 SINE Alu 3 109 -8 1 1981 1170 124 43 0 chr1 183058116 183058301 -14137131 - B2_Mm2 SINE B2 0 195 3 1 1981 1164 62 7 0 chr1 183058320 183058466 -14136966 - B1_Mus1 SINE Alu 0 148 2 1 1981 456 256 78 62 chr1 183059055 183059193 -14136239 + B4A SINE B4 1 139 -153 1 1981 1534 58 16 0 chr1 183059193 183059384 -14136048 + B2_Mm2 SINE B2 1 194 -1 1 1981 456 256 78 62 chr1 183059384 183059487 -14135945 + B4A SINE B4 140 246 -46 1 1981 207 184 0 26 chr1 183059491 183059530 -14135902 + GA-rich Low_complexity Low_complexity 3 40 0 1 1981 940 226 10 25 chr1 183060221 183060425 -14135007 + B3 SINE B2 2 202 -14 1 1981 310 318 45 27 chr1 183061328 183061438 -14133994 + ID_B1 SINE B4 103 214 -10 1 1981 1208 58 0 0 chr1 183061438 183061594 -14133838 + B2_Mm2 SINE B2 2 157 -38 1 1981 405 0 0 0 chr1 183061594 183061639 -14133793 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1 1981 379 306 39 24 chr1 183061675 183061802 -14133630 + B4A SINE B4 17 145 -147 1 1981 433 88 49 24 chr1 183062110 183062192 -14133240 - B1_Mur4 SINE Alu 0 150 67 1 1981 308 277 48 0 chr1 183062650 183062733 -14132699 + B1_Mur3 SINE Alu 27 113 -36 1 1981 224 0 65 0 chr1 183062766 183062797 -14132635 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1981 331 81 48 16 chr1 183062809 183062872 -14132560 + RMER4B LTR ERVK 1 65 -520 1 1981 201 108 0 0 chr1 183062876 183062913 -14132519 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1981 1679 155 100 36 chr1 183062933 183063362 -14132070 + RMER4B LTR ERVK 59 462 -4 1 1981 718 165 39 16 chr1 183063378 183063507 -14131925 - B1_Mus1 SINE Alu -15 133 2 1 1981 418 289 72 6 chr1 183063507 183063688 -14131744 - Charlie5 DNA MER1_type -172 2452 2260 1 1981 532 47 188 0 chr1 183063684 183063769 -14131663 + B1_Mus2 SINE Alu 47 147 0 1 1981 504 54 0 26 chr1 183063921 183063997 -14131435 + B1_Mur4 SINE Alu 77 150 0 1 1981 241 207 69 0 chr1 183064121 183064179 -14131253 + ORR1E LTR MaLR 1 62 -297 1 1981 943 68 121 0 chr1 183064590 183064722 -14130710 - B1_Mus1 SINE Alu 0 148 1 1 1981 618 214 16 0 chr1 183065658 183065784 -14129648 - B1_Mur1 SINE Alu 0 149 22 1 1981 1550 48 27 0 chr1 183066009 183066197 -14129235 - B2_Mm1t SINE B2 0 193 1 1 1981 722 215 86 118 chr1 183066228 183066280 -14129152 + B3 SINE B2 3 40 -176 1 1981 1009 58 73 0 chr1 183066280 183066417 -14129015 - B1_Mus2 SINE Alu 0 147 1 1 1981 722 215 86 118 chr1 183066417 183066585 -14128847 + B3 SINE B2 41 216 0 1 1981 833 158 0 12 chr1 183066594 183066612 -14128820 + polypurine Low_complexity Low_complexity 2 19 0 1 1981 1311 108 43 0 chr1 183066612 183066798 -14128634 + B2_Mm2 SINE B2 2 195 0 1 1981 833 158 0 12 chr1 183066798 183066945 -14128487 + GA-rich Low_complexity Low_complexity 20 164 0 1 1981 279 0 0 0 chr1 183066945 183066976 -14128456 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 1 1981 201 138 0 0 chr1 183067072 183067101 -14128331 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1 1981 382 246 140 39 chr1 183067196 183067374 -14128058 + B3A SINE B2 2 197 -1 1 1981 1471 256 65 22 chr1 183067414 183067906 -14127526 + Lx7 LINE L1 6823 7335 -361 1 1981 22 35 0 0 chr1 183068024 183068053 -14127379 + AT_rich Low_complexity Low_complexity 1 29 0 1 1981 365 267 0 33 chr1 183068135 183068255 -14127177 + PB1D9 SINE Alu 1 116 -4 1 1981 566 242 55 22 chr1 183068359 183068541 -14126891 - B3 SINE B2 0 216 29 1 1981 1190 35 14 0 chr1 183068767 183068909 -14126523 + B1_Mm SINE Alu 4 147 0 1 1981 262 186 194 28 chr1 183069561 183069633 -14125799 - PB1D9 SINE Alu -13 107 24 1 1981 281 243 130 46 chr1 183069666 183069774 -14125658 - PB1D10 SINE Alu 0 117 1 1 1981 255 211 78 13 chr1 183069967 183070044 -14125388 - B1_Mur3 SINE Alu -61 88 7 1 1981 586 260 0 46 chr1 183070073 183070226 -14125206 + B1_Mur1 SINE Alu 3 148 -1 1 1981 296 152 51 0 chr1 183070392 183070451 -14124981 + B4 SINE B4 11 72 -220 1 1981 495 147 88 0 chr1 183070526 183070628 -14124804 + B3 SINE B2 2 112 -104 1 1981 6479 132 6 4 chr1 183070628 183071646 -14123786 - L1_Mm LINE L1 -156 5727 4708 1 1981 334 287 40 60 chr1 183071646 183071757 -14123675 + MER20B DNA MER1_type 181 288 -495 1 1981 1130 158 26 0 chr1 183071757 183071947 -14123485 - B2_Mm2 SINE B2 0 195 1 1 1981 334 287 40 60 chr1 183071947 183072035 -14123397 + MER20B DNA MER1_type 289 376 -407 1 1981 211 276 52 0 chr1 183072040 183072098 -14123334 - B1F SINE Alu -88 61 1 1 1981 605 182 16 8 chr1 183072689 183072811 -14122621 + B1_Mur3 SINE Alu 1 123 -26 1 1981 491 128 51 0 chr1 183072809 183072887 -14122545 + RLTR19 LTR ERVK 418 499 0 1 1981 384 132 29 0 chr1 183072929 183072997 -14122435 + B3 SINE B2 61 130 -86 1 1981 589 135 87 0 chr1 183073226 183073352 -14122080 + B1_Mus2 SINE Alu 11 147 0 1 1981 845 81 276 26 chr1 183073467 183073619 -14121813 + B2_Mm2 SINE B2 1 190 -5 1 1981 470 183 74 8 chr1 183073802 183073923 -14121509 + B1_Mur2 SINE Alu 2 130 -19 1 1981 262 253 83 12 chr1 183074634 183074718 -14120714 + PB1 SINE Alu 36 125 -2 2 1981 210 71 0 0 chr1 183074996 183075024 -14120408 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1981 480 188 41 20 chr1 183075198 183075296 -14120136 + B1_Mus2 SINE Alu 5 104 -43 2 1981 260 290 26 86 chr1 183075311 183075334 -14120098 - ID_B1 SINE B4 -105 119 98 2 1981 1048 212 146 24 chr1 183075334 183075662 -14119770 - ORR1D2 LTR MaLR -2 368 1 2 1981 260 290 26 86 chr1 183075662 183075755 -14119677 - ID_B1 SINE B4 -127 97 10 2 1981 625 256 81 103 chr1 183075789 183076185 -14119247 - L1M2 LINE L1 -496 5804 5418 2 1981 594 240 8 0 chr1 183076250 183076379 -14119053 + B1F SINE Alu 13 142 -7 2 1981 559 236 80 6 chr1 183076426 183076588 -14118844 - L1M3 LINE L1 -681 5490 5317 2 1981 499 83 48 0 chr1 183076588 183076672 -14118760 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 2 1981 246 146 0 24 chr1 183076675 183076717 -14118715 + CT-rich Low_complexity Low_complexity 2 42 0 2 1981 538 172 0 185 chr1 183076718 183076875 -14118557 - B1_Mur3 SINE Alu -21 128 1 2 1981 618 183 34 34 chr1 183077030 183077177 -14118255 - B1_Mur3 SINE Alu 0 149 3 2 1981 209 220 20 0 chr1 183077183 183077233 -14118199 + T-rich Low_complexity Low_complexity 4 54 0 2 1981 21 0 0 0 chr1 183077264 183077285 -14118147 + AT_rich Low_complexity Low_complexity 1 21 0 2 1981 356 104 15 0 chr1 183077294 183077361 -14118071 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1981 450 0 0 0 chr1 183077548 183077598 -14117834 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1981 324 0 0 0 chr1 183077598 183077633 -14117799 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1981 349 188 29 0 chr1 183077641 183077710 -14117722 - PB1D9 SINE Alu -48 72 2 2 1981 616 218 14 57 chr1 183077774 183077915 -14117517 - B1F2 SINE Alu -9 140 6 2 1981 279 203 0 72 chr1 183077936 183078005 -14117427 - RMER6B LTR ERVK -31 430 367 2 1981 1051 179 226 44 chr1 183078418 183078832 -14116600 - RMER6B LTR ERVK -14 447 3 2 1981 749 249 51 24 chr1 183079141 183079396 -14116036 + RLTR15 LTR ERVK 1 262 -97 2 1981 923 131 29 40 chr1 183079594 183079769 -14115663 + B2_Mm2 SINE B2 4 176 -19 2 1981 343 244 13 0 chr1 183079867 183079945 -14115487 - B3 SINE B2 -84 132 54 2 1981 21 57 0 0 chr1 183080263 183080298 -14115134 + AT_rich Low_complexity Low_complexity 1 35 0 2 1981 23 0 0 0 chr1 183081295 183081318 -14114114 + GC_rich Low_complexity Low_complexity 1 23 0 2 1981 22 0 0 0 chr1 183081697 183081719 -14113713 + AT_rich Low_complexity Low_complexity 1 22 0 2 1981 216 0 0 0 chr1 183083134 183083158 -14112274 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1981 451 212 50 50 chr1 183083420 183083539 -14111893 - ID_B1 SINE B4 0 224 106 2 1981 626 278 34 8 chr1 183083575 183083814 -14111618 + B4A SINE B4 1 292 0 2 1981 1057 51 0 0 chr1 183084379 183084517 -14110915 + B2_Mm2 SINE B2 1 138 -57 2 1981 558 191 34 25 chr1 183084877 183084995 -14110437 + PB1D9 SINE Alu 1 119 -1 2 1981 357 253 63 0 chr1 183085137 183085232 -14110200 + PB1D7 SINE Alu 2 102 -18 2 1981 390 171 39 13 chr1 183085307 183085384 -14110048 - B3A SINE B2 -119 79 1 2 1981 441 220 83 0 chr1 183085407 183085516 -14109916 - PB1D9 SINE Alu 0 120 3 2 1981 1241 34 0 14 chr1 183086174 183086322 -14109110 - B1_Mus2 SINE Alu 0 147 2 2 1981 246 259 108 88 chr1 183086331 183086479 -14108953 - YREP_Mm Unknown Unknown -1480 332 182 2 1981 470 316 44 0 chr1 183086352 183086488 -14108944 + ID_B1 SINE B4 82 223 -1 2 1981 352 266 80 73 chr1 183087089 183087371 -14108061 - MTEb LTR MaLR 0 379 77 2 1981 682 201 14 20 chr1 183087530 183087677 -14107755 + B1_Mur3 SINE Alu 4 149 0 2 1981 763 234 14 105 chr1 183087807 183087982 -14107450 - B3A SINE B2 -6 192 32 2 1981 648 133 218 42 chr1 183087982 183088147 -14107285 - B2_Mm2 SINE B2 0 195 2 2 1981 763 234 14 105 chr1 183088147 183088181 -14107251 - B3A SINE B2 -167 31 2 2 1981 408 40 0 0 chr1 183088207 183088257 -14107175 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1981 550 183 37 17 chr1 183088362 183088489 -14106943 + B1_Mur2 SINE Alu 9 148 -1 2 1981 395 269 32 0 chr1 183088530 183088623 -14106809 + RSINE1 SINE B4 30 125 -40 2 1981 252 216 0 0 chr1 183088693 183088744 -14106688 + PB1D7 SINE Alu 69 119 -1 2 1981 485 194 324 28 chr1 183088931 183089108 -14106324 - MTD LTR MaLR -148 259 26 2 1981 1830 162 133 31 chr1 183089108 183089490 -14105942 + MTC LTR MaLR 1 421 0 2 1981 485 230 28 41 chr1 183089490 183089519 -14105913 - MTD LTR MaLR -394 25 1 2 1981 1049 98 7 0 chr1 183089532 183089685 -14105747 + B2_Mm2 SINE B2 1 154 -41 2 1981 342 0 0 0 chr1 183089686 183089724 -14105708 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 2 1981 522 0 0 0 chr1 183089735 183089793 -14105639 + (GAAAA)n Simple_repeat Simple_repeat 3 60 0 2 1981 471 303 90 0 chr1 183089805 183089950 -14105482 - ID_B1 SINE B4 -64 160 3 2 1981 4333 132 57 8 chr1 183090001 183090720 -14104712 - RMER6A LTR ERVK -2 754 1 2 1981 425 270 50 14 chr1 183091446 183091585 -14103847 + B1F1 SINE Alu 1 144 -5 2 1981 524 293 133 27 chr1 183091585 183091848 -14103584 + B4A SINE B4 2 292 0 2 1981 2122 110 55 0 chr1 183092512 183092822 -14102610 - ORR1A2 LTR MaLR 0 327 1 2 1981 1321 22 0 164 chr1 183092823 183092994 -14102438 - L1Md_F3 LINE L1 -651 5933 5797 2 1981 1289 7 7 0 chr1 183092994 183093139 -14102293 - B1_Mm SINE Alu 0 147 2 2 1981 1321 86 40 133 chr1 183093139 183093219 -14102213 - L1Md_F3 LINE L1 -474 5826 5718 2 1981 408 20 0 0 chr1 183093326 183093375 -14102057 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 2 1981 521 224 52 0 chr1 183093378 183093494 -14101938 - B3A SINE B2 -75 123 2 2 1981 363 256 118 22 chr1 183093522 183093658 -14101774 + B1F1 SINE Alu 1 149 0 2 1981 287 312 53 30 chr1 183094095 183094227 -14101205 + MIR SINE MIR 56 190 -72 2 1981 861 161 44 0 chr1 183094479 183094616 -14100816 - B1_Mur3 SINE Alu -6 143 1 2 1981 824 179 105 11 chr1 183094638 183094819 -14100613 - B3A SINE B2 0 198 1 2 1981 259 280 0 48 chr1 183094819 183094838 -14100594 + T-rich Low_complexity Low_complexity 100 118 0 2 1981 1174 62 7 0 chr1 183094838 183094984 -14100448 - B1_Mus2 SINE Alu 0 147 1 2 1981 259 280 0 48 chr1 183094984 183095057 -14100375 + T-rich Low_complexity Low_complexity 29 99 0 2 1981 855 57 161 0 chr1 183095057 183095181 -14100251 - B1_Mus1 SINE Alu 0 148 5 2 1981 259 280 0 48 chr1 183095181 183095195 -14100237 + T-rich Low_complexity Low_complexity 18 28 0 2 1981 1265 107 43 5 chr1 183095195 183095383 -14100049 - B2_Mm2 SINE B2 0 195 1 2 1981 259 280 0 48 chr1 183095383 183095398 -14100034 + T-rich Low_complexity Low_complexity 3 17 0 2 1981 345 277 12 0 chr1 183095696 183095779 -14099653 - B1_Mur2 SINE Alu -52 97 14 2 1981 978 47 0 0 chr1 183095786 183095913 -14099519 - B1_Mus1 SINE Alu 0 148 22 2 1981 454 188 241 0 chr1 183095921 183096054 -14099378 - B3A SINE B2 -33 165 1 2 1981 1436 149 9 0 chr1 183096660 183096881 -14098551 + URR1B DNA MER1_type 1 223 -2 2 1981 1203 73 77 17 chr1 183097688 183097869 -14097563 - B2_Mm2 SINE B2 -1 194 3 2 1981 282 254 41 58 chr1 183098996 183099117 -14096315 + L2a LINE L2 3302 3420 -6 2 1981 805 185 208 0 chr1 183099267 183099445 -14095987 - B3 SINE B2 0 216 2 2 1981 232 258 15 0 chr1 183099646 183099712 -14095720 + ID4 SINE ID 4 70 -13 2 1981 216 0 0 0 chr1 183099788 183099812 -14095620 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1981 460 260 119 7 chr1 183099812 183099963 -14095469 - B3 SINE B2 -28 188 21 2 1981 180 0 0 0 chr1 183100126 183100146 -14095286 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1981 348 234 0 0 chr1 183100702 183100766 -14094666 - ID4_ SINE ID -3 80 17 2 1981 319 274 0 14 chr1 183101471 183101545 -14093887 - ID4 SINE ID -10 73 1 2 1981 292 258 0 0 chr1 183101723 183101785 -14093647 - PB1D10 SINE Alu -20 97 36 2 1981 548 167 129 45 chr1 183101936 183102068 -14093364 - B3 SINE B2 -71 145 3 2 1981 771 150 42 28 chr1 183102097 183102241 -14093191 - B1_Mus1 SINE Alu 0 148 3 2 1981 377 266 53 11 chr1 183103029 183103124 -14092308 - RSINE1 SINE B4 -56 109 11 2 1981 22 0 0 0 chr1 183103445 183103467 -14091965 + AT_rich Low_complexity Low_complexity 1 22 0 2 1981 483 18 0 0 chr1 183103905 183103961 -14091471 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1981 342 0 0 0 chr1 183103961 183103998 -14091434 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1981 500 42 14 0 chr1 183104237 183104308 -14091124 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1981 25 31 0 0 chr1 183104590 183104622 -14090810 + AT_rich Low_complexity Low_complexity 1 32 0 2 1981 21 0 0 0 chr1 183107256 183107277 -14088155 + AT_rich Low_complexity Low_complexity 1 21 0 2 1982 792 191 0 7 chr1 183108229 183108366 -14087066 - B1_Mur3 SINE Alu -10 139 4 2 1982 1216 21 14 0 chr1 183108581 183108725 -14086707 - B1_Mus2 SINE Alu 0 147 2 2 1982 363 211 174 36 chr1 183109177 183109311 -14086121 + B3 SINE B2 12 162 -36 2 1982 390 279 49 0 chr1 183109338 183109460 -14085972 + RSINE1 SINE B4 3 130 -35 2 1982 704 129 79 24 chr1 183109604 183109731 -14085701 - B1_Mur4 SINE Alu -15 135 2 2 1982 308 261 0 64 chr1 183110351 183110445 -14084987 + B3A SINE B2 1 88 -110 2 1982 226 254 125 14 chr1 183111900 183111972 -14083460 + B3A SINE B2 11 90 -108 3 1982 189 0 0 0 chr1 183112744 183112765 -14082667 + (CAA)n Simple_repeat Simple_repeat 3 23 0 3 1982 667 214 21 0 chr1 183113121 183113261 -14082171 - B1_Mur2 SINE Alu -5 144 2 3 1982 264 266 182 16 chr1 183113307 183113334 -14082098 - B1_Mur1 SINE Alu 0 149 122 3 1982 1320 132 32 0 chr1 183113334 183113553 -14081879 - URR1A DNA MER1_type 0 226 1 3 1982 264 266 182 16 chr1 183113553 183113651 -14081781 - B1_Mur1 SINE Alu -28 121 3 3 1982 519 181 19 9 chr1 183114240 183114346 -14081086 - PB1D9 SINE Alu -5 115 9 3 1982 260 283 0 39 chr1 183114259 183114362 -14081070 - ID_B1 SINE B4 -49 175 77 3 1982 489 252 0 0 chr1 183115067 183115178 -14080254 + B1_Mur2 SINE Alu 2 112 -37 3 1982 245 291 73 6 chr1 183115254 183115420 -14080012 - ID_B1 SINE B4 -15 209 1 3 1982 498 245 64 7 chr1 183115430 183115570 -14079862 - B1F SINE Alu -1 148 1 3 1982 354 193 102 0 chr1 183115639 183115727 -14079705 - PB1D9 SINE Alu -1 119 23 3 1982 474 254 8 33 chr1 183115869 183115991 -14079441 - PB1D9 SINE Alu 0 120 2 3 1982 729 78 0 0 chr1 183116401 183116504 -14078928 + B1_Mus2 SINE Alu 45 147 0 3 1982 393 149 0 0 chr1 183116504 183116571 -14078861 + (A)n Simple_repeat Simple_repeat 1 67 0 3 1982 1183 69 0 0 chr1 183116746 183116890 -14078542 + B1_Mm SINE Alu 2 145 -2 3 1982 273 125 0 0 chr1 183116894 183116950 -14078482 + (A)n Simple_repeat Simple_repeat 1 56 0 3 1982 444 151 194 0 chr1 183117567 183117660 -14077772 - B1_Mus2 SINE Alu -28 119 9 3 1982 442 252 274 22 chr1 183118222 183118558 -14076874 - L1MB7 LINE L1 -104 6080 5662 3 1982 504 136 57 0 chr1 183118650 183118738 -14076694 + B2_Mm2 SINE B2 15 107 -88 3 1982 4604 139 107 57 chr1 183118790 183119744 -14075688 + Lx4A LINE L1 6056 7057 -1 3 1982 1588 43 5 0 chr1 183119958 183120146 -14075286 + B2_Mm1t SINE B2 1 189 -4 3 1982 1226 41 0 0 chr1 183120282 183120427 -14075005 - B1_Mus2 SINE Alu 0 147 3 3 1982 224 125 0 59 chr1 183120843 183120860 -14074572 + A-rich Low_complexity Low_complexity 1 15 0 3 1982 1176 41 0 14 chr1 183120860 183121008 -14074424 + B1_Mus1 SINE Alu 3 148 0 3 1982 224 125 0 59 chr1 183121008 183121041 -14074391 + A-rich Low_complexity Low_complexity 16 48 0 3 1982 778 141 15 15 chr1 183121277 183121414 -14074018 + B1_Mus2 SINE Alu 9 145 -2 3 1982 1690 36 0 0 chr1 183121418 183121611 -14073821 + B2_Mm1a SINE B2 1 193 0 3 1982 327 299 152 17 chr1 183121675 183121852 -14073580 + B3 SINE B2 2 202 -14 3 1982 605 243 20 53 chr1 183122596 183122748 -14072684 + RSINE1 SINE B4 2 148 -17 3 1982 753 202 70 43 chr1 183122712 183122898 -14072534 - B3 SINE B2 -24 192 2 3 1982 261 289 12 12 chr1 183122908 183122992 -14072440 - PB1D10 SINE Alu -8 109 26 3 1982 400 231 46 0 chr1 183123111 183123219 -14072213 + PB1 SINE Alu 12 124 -3 3 1982 814 234 28 71 chr1 183123465 183123677 -14071755 - B3 SINE B2 0 216 14 3 1982 1123 75 7 0 chr1 183123727 183123873 -14071559 - B1_Mm SINE Alu 0 147 1 3 1982 923 217 65 5 chr1 183124224 183124423 -14071009 + B3 SINE B2 1 211 -5 3 1982 26 0 0 0 chr1 183124425 183124451 -14070981 + AT_rich Low_complexity Low_complexity 1 26 0 3 1982 901 251 31 25 chr1 183125188 183125474 -14069958 + B4A SINE B4 1 288 -4 3 1982 495 87 0 0 chr1 183125738 183125807 -14069625 + (GGA)n Simple_repeat Simple_repeat 1 69 0 3 1982 288 169 0 84 chr1 183126143 183126214 -14069218 - B3 SINE B2 -2 214 150 3 1982 277 239 14 14 chr1 183126844 183126916 -14068516 + ID4 SINE ID 2 73 -10 3 1982 24 67 0 0 chr1 183127863 183127908 -14067524 + AT_rich Low_complexity Low_complexity 1 45 0 3 1982 855 164 7 0 chr1 183128510 183128656 -14066776 + B1_Mus2 SINE Alu 1 147 0 3 1982 229 310 166 31 chr1 183129360 183129523 -14065909 - MIR SINE MIR -71 191 7 3 1982 279 271 47 0 chr1 183130102 183130187 -14065245 + RSINE1 SINE B4 46 134 -31 3 1982 243 238 30 45 chr1 183130395 183130461 -14064971 + ID2 SINE ID 1 65 -18 3 1982 477 198 0 30 chr1 183130649 183130748 -14064684 + B1_Mur2 SINE Alu 12 107 -42 3 1982 228 263 102 31 chr1 183130665 183130763 -14064669 + B4 SINE B4 111 215 -77 3 1982 1171 85 10 107 chr1 183130989 183131186 -14064246 + B2_Mm1t SINE B2 2 179 -14 3 1982 312 164 0 0 chr1 183131218 183131273 -14064159 + B2_Mm2 SINE B2 47 101 -94 3 1982 353 232 0 10 chr1 183131301 183131397 -14064035 + A-rich Low_complexity Low_complexity 2 96 0 3 1982 258 219 15 15 chr1 183131421 183131486 -14063946 - L2 LINE L2 -966 2453 2389 3 1982 422 113 23 70 chr1 183131501 183131570 -14063862 + B1_Mur2 SINE Alu 68 136 -13 3 1982 219 36 0 0 chr1 183131570 183131598 -14063834 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1982 422 113 23 70 chr1 183131598 183131614 -14063818 + B1_Mur2 SINE Alu 137 149 0 3 1982 510 259 50 14 chr1 183131678 183131819 -14063613 + B1_Mur1 SINE Alu 1 146 -3 3 1982 279 173 0 0 chr1 183131957 183132009 -14063423 + CT-rich Low_complexity Low_complexity 3 54 0 3 1982 5507 24 3 3 chr1 183132166 183132806 -14062626 + L1Md_F2 LINE L1 5943 6582 0 3 1982 1322 73 44 6 chr1 183132845 183133025 -14062407 - B2_Mm2 SINE B2 -8 187 1 3 1982 31 0 0 0 chr1 183133028 183133059 -14062373 + AT_rich Low_complexity Low_complexity 1 31 0 3 1982 225 0 0 0 chr1 183135201 183135226 -14060206 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 1982 469 15 15 30 chr1 183135226 183135293 -14060139 + (TTA)n Simple_repeat Simple_repeat 2 67 0 3 1982 1167 62 0 0 chr1 183135293 183135437 -14059995 - B1_Mus2 SINE Alu -3 144 1 3 1982 1244 110 60 0 chr1 183136134 183136316 -14059116 - B2_Mm2 SINE B2 -1 194 2 3 1982 1085 82 0 39 chr1 183137651 183137804 -14057628 + B1_Mm SINE Alu 1 147 0 3 1982 202 48 70 23 chr1 183138478 183138521 -14056911 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1982 25 0 0 0 chr1 183139020 183139045 -14056387 + AT_rich Low_complexity Low_complexity 1 25 0 3 1982 279 0 0 0 chr1 183140207 183140238 -14055194 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 1982 324 0 0 0 chr1 183140238 183140274 -14055158 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1982 378 0 0 0 chr1 183140616 183140658 -14054774 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1982 210 91 0 0 chr1 183141316 183141349 -14054083 + (CGG)n Simple_repeat Simple_repeat 2 34 0 3 1982 25 0 0 0 chr1 183141519 183141544 -14053888 + GC_rich Low_complexity Low_complexity 1 25 0 3 1982 22 0 0 0 chr1 183141606 183141628 -14053804 + GC_rich Low_complexity Low_complexity 1 22 0 3 1982 180 0 0 0 chr1 183141652 183141672 -14053760 + (GGA)n Simple_repeat Simple_repeat 1 20 0 3 1982 28 29 0 0 chr1 183141860 183141895 -14053537 + GC_rich Low_complexity Low_complexity 1 35 0 3 1982 27 62 0 0 chr1 183141945 183141993 -14053439 + GC_rich Low_complexity Low_complexity 1 48 0 3 1982 219 88 0 0 chr1 183142009 183142043 -14053389 + (CGG)n Simple_repeat Simple_repeat 1 34 0 3 1982 21 57 0 0 chr1 183142253 183142288 -14053144 + GC_rich Low_complexity Low_complexity 1 35 0 3 1982 1209 41 7 0 chr1 183144344 183144489 -14050943 + B1_Mus2 SINE Alu 2 147 0 3 1982 416 188 312 0 chr1 183145326 183145470 -14049962 + B3 SINE B2 27 215 -1 3 1982 675 134 18 18 chr1 183145511 183145625 -14049807 + PB1D9 SINE Alu 1 114 -6 3 1982 508 184 211 0 chr1 183145657 183145766 -14049666 + B1_Mus1 SINE Alu 9 140 -8 3 1982 276 293 37 0 chr1 183146044 183146126 -14049306 - PB1D10 SINE Alu -32 85 1 3 1982 207 69 0 0 chr1 183146570 183146599 -14048833 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 3 1982 1314 73 101 6 chr1 183147310 183147469 -14047963 + B2_Mm2 SINE B2 1 177 -18 3 1982 351 0 0 0 chr1 183147469 183147508 -14047924 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 1982 1314 73 101 6 chr1 183147508 183147526 -14047906 + B2_Mm2 SINE B2 178 195 0 3 1982 330 26 0 0 chr1 183147716 183147755 -14047677 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1982 470 215 148 8 chr1 183148069 183148191 -14047241 + B1_Mur2 SINE Alu 5 143 -6 3 1982 613 202 231 0 chr1 183148246 183148419 -14047013 + B3 SINE B2 1 213 -3 3 1982 210 217 157 14 chr1 183148430 183148500 -14046932 + ID4_ SINE ID 4 83 0 3 1982 423 264 62 23 chr1 183148647 183148775 -14046657 + ID_B1 SINE B4 77 209 -15 3 1982 573 106 197 31 chr1 183149006 183149133 -14046299 - B1_Mur4 SINE Alu -1 149 2 3 1982 545 237 43 0 chr1 183149358 183149497 -14045935 - RSINE1 SINE B4 -19 146 2 3 1982 304 295 176 19 chr1 183149587 183149746 -14045686 - MIRb SINE MIR -29 239 56 3 1982 1340 245 78 20 chr1 183150567 183150728 -14044704 - MTD LTR MaLR 0 419 236 3 1982 1151 42 21 0 chr1 183150728 183150871 -14044561 - B1_Mus2 SINE Alu 0 147 2 3 1982 1340 245 78 20 chr1 183150871 183151105 -14044327 - MTD LTR MaLR -184 235 2 3 1982 1089 233 5 0 chr1 183151255 183151470 -14043962 - B3 SINE B2 0 216 1 3 1982 761 209 0 39 chr1 183151503 183151657 -14043775 - B1_Mus1 SINE Alu 0 148 1 3 1982 549 125 0 0 chr1 183151671 183151759 -14043673 + (TCCC)n Simple_repeat Simple_repeat 2 89 0 3 1982 529 161 21 103 chr1 183151763 183151908 -14043524 - B1_Mur1 SINE Alu -16 133 1 3 1982 213 316 0 71 chr1 183151908 183151993 -14043439 - BC1_Mm scRNA scRNA -56 96 18 3 1982 420 196 65 9 chr1 183152017 183152125 -14043307 - B1F SINE Alu 0 149 36 3 1982 236 231 70 62 chr1 183152217 183152346 -14043086 - L1MC5 LINE L1 -291 7670 7541 4 1982 272 317 32 24 chr1 183152388 183152511 -14042921 - L1ME3A LINE L1 -12 6161 6038 4 1982 753 179 57 7 chr1 183152703 183152844 -14042588 - B1F2 SINE Alu 0 149 2 4 1982 656 258 48 6 chr1 183152914 183153082 -14042350 - B3 SINE B2 -1 215 41 4 1982 746 220 26 62 chr1 183153115 183153309 -14042123 - ID_B1 SINE B4 0 224 38 4 1982 302 304 88 88 chr1 183153319 183153431 -14042001 - L1M5 LINE L1 -860 5286 5175 4 1982 1122 76 7 0 chr1 183153431 183153576 -14041856 - B1_Mus2 SINE Alu 0 147 2 4 1982 302 304 88 88 chr1 183153576 183153712 -14041720 - L1M5 LINE L1 -972 5174 5038 4 1982 1533 48 16 0 chr1 183153860 183154049 -14041383 + B2_Mm1a SINE B2 2 193 0 4 1982 386 246 66 128 chr1 183154164 183154270 -14041162 - L1M5 LINE L1 -1390 4756 4669 4 1982 1223 61 0 0 chr1 183154270 183154418 -14041014 - B1_Mus1 SINE Alu 0 148 1 4 1982 386 246 66 128 chr1 183154418 183154568 -14040864 - L1M5 LINE L1 -1478 4668 4516 4 1982 798 139 7 14 chr1 183154572 183154711 -14040721 + B1_Mur3 SINE Alu 3 140 -9 4 1982 366 143 0 0 chr1 183154713 183154790 -14040642 + (CCA)n Simple_repeat Simple_repeat 2 78 0 4 1982 370 362 64 21 chr1 183155022 183155163 -14040269 - RSINE1 SINE B4 -17 148 2 4 1982 1498 45 39 0 chr1 183155966 183156145 -14039287 - B2_Mm2 SINE B2 -8 187 2 4 1982 753 271 16 11 chr1 183156217 183156400 -14039032 - B3A SINE B2 -14 184 1 4 1982 722 200 0 0 chr1 183156446 183156576 -14038856 - B3 SINE B2 -86 130 1 4 1982 249 271 107 45 chr1 183156589 183156701 -14038731 - MIRb SINE MIR -121 147 29 4 1982 284 298 81 63 chr1 183157849 183157960 -14037472 - L2a LINE L2 -9 3417 3305 4 1982 573 155 0 0 chr1 183159496 183159625 -14035807 + (TG)n Simple_repeat Simple_repeat 1 129 0 4 1982 550 250 7 49 chr1 183159628 183159771 -14035661 + ID_B1 SINE B4 88 224 0 4 1982 637 169 123 0 chr1 183163360 183163490 -14031942 + B1_Mur3 SINE Alu 2 147 -2 4 1982 221 180 20 0 chr1 183163492 183163542 -14031890 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1982 1107 213 5 0 chr1 183163557 183163768 -14031664 - B3 SINE B2 -4 212 1 4 1982 687 213 35 14 chr1 183163780 183163923 -14031509 - B1_Mm SINE Alu -1 146 1 4 1982 289 302 196 26 chr1 183165318 183165512 -14029920 - L1MA10 LINE L1 -4 6330 5950 4 1982 513 122 79 24 chr1 183165532 183165658 -14029774 - Lx9 LINE L1 0 7644 7512 4 1982 235 88 29 0 chr1 183165714 183165748 -14029684 - L1MC1 LINE L1 -269 6064 6030 4 1982 650 210 22 7 chr1 183165988 183166127 -14029305 - B1_Mur1 SINE Alu -7 142 2 4 1982 392 188 41 20 chr1 183166570 183166668 -14028764 - PB1D10 SINE Alu -1 116 17 4 1982 1442 50 39 0 chr1 183166694 183166873 -14028559 + B2_Mm2 SINE B2 1 186 -9 4 1982 24 0 0 0 chr1 183166896 183166920 -14028512 + AT_rich Low_complexity Low_complexity 1 24 0 4 1982 262 317 9 129 chr1 183166933 183167049 -14028383 - RSINE1 SINE B4 -17 148 47 4 1982 256 190 23 81 chr1 183167092 183167178 -14028254 - ID4_ SINE ID -2 81 1 4 1982 312 266 179 23 chr1 183167181 183167354 -14028078 - L1MEc LINE L1 -1327 4992 4793 4 1982 310 297 0 67 chr1 183167354 183167366 -14028066 + ID SINE ID 69 72 -152 4 1982 406 238 0 65 chr1 183167366 183167492 -14027940 + PB1D10 SINE Alu 1 117 0 4 1982 301 321 130 0 chr1 183167847 183167978 -14027454 - L1MEc LINE L1 -4198 2202 2055 4 1982 277 233 190 41 chr1 183168205 183168326 -14027106 - B1F SINE Alu -9 140 1 4 1982 338 0 24 0 chr1 183168888 183168930 -14026502 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 4 1982 225 136 87 0 chr1 183168968 183169071 -14026361 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 4 1982 375 117 84 24 chr1 183169087 183169254 -14026178 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4 1982 229 257 129 26 chr1 183169293 183169409 -14026023 + MIRc SINE MIR 21 148 -120 4 1982 1388 195 78 45 chr1 183170099 183170636 -14024796 + RLTR11A2 LTR ERVK 4 488 -39 4 1982 1143 15 0 0 chr1 183170591 183170723 -14024709 + B1_Mm SINE Alu 11 142 -5 4 1982 215 0 67 0 chr1 183170727 183170757 -14024675 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 1982 565 121 0 42 chr1 183170757 183170846 -14024586 + RLTR11A2 LTR ERVK 442 527 0 4 1982 249 264 21 62 chr1 183170859 183170956 -14024476 + RSINE1 SINE B4 73 165 0 4 1982 641 318 24 45 chr1 183171097 183171344 -14024088 + B4A SINE B4 51 292 0 4 1982 191 239 0 27 chr1 183171389 183171462 -14023970 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 4 1982 507 264 0 0 chr1 183171444 183171622 -14023810 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1982 1155 116 27 11 chr1 183171849 183172032 -14023400 - B2_Mm2 SINE B2 -8 187 2 4 1982 315 0 0 0 chr1 183172040 183172075 -14023357 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1982 324 0 0 0 chr1 183173015 183173051 -14022381 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1982 258 32 0 0 chr1 183173118 183173149 -14022283 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1982 395 237 52 0 chr1 183173149 183173168 -14022264 - PB1D10 SINE Alu -14 103 3 4 1982 416 182 13 0 chr1 183173168 183173245 -14022187 - ID_B1 SINE B4 -63 161 84 4 1982 404 255 39 19 chr1 183173324 183173428 -14022004 + RSINE1 SINE B4 5 110 -55 4 1982 204 67 0 0 chr1 183173508 183173538 -14021894 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1982 1427 68 0 26 chr1 183173965 183174160 -14021272 - B2_Mm2 SINE B2 -5 190 1 4 1982 817 101 7 92 chr1 183174546 183174698 -14020734 - B1_Mur3 SINE Alu -1 148 10 4 1982 1170 68 0 13 chr1 183174796 183174946 -14020486 + B1_Mus1 SINE Alu 1 148 0 4 1982 37 0 0 0 chr1 183174946 183174983 -14020449 + AT_rich Low_complexity Low_complexity 1 37 0 4 1982 369 205 27 0 chr1 183174983 183175095 -14020337 + GA-rich Low_complexity Low_complexity 2 116 0 4 1982 858 189 0 13 chr1 183175989 183176139 -14019293 - B1_Mur1 SINE Alu 0 149 2 4 1982 250 226 0 0 chr1 183178466 183178519 -14016913 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1982 685 312 95 50 chr1 183178630 183178968 -14016464 + ORR1E LTR MaLR 2 354 -5 4 1982 21 36 0 0 chr1 183179167 183179195 -14016237 + AT_rich Low_complexity Low_complexity 1 28 0 4 1982 523 252 8 39 chr1 183179200 183179328 -14016104 + PB1 SINE Alu 1 124 -3 4 1982 817 285 58 15 chr1 183179333 183179607 -14015825 + B4 SINE B4 1 286 -6 4 1982 324 130 0 0 chr1 183179616 183179685 -14015747 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1982 384 59 0 0 chr1 183179684 183179735 -14015697 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1982 870 207 56 10 chr1 183180465 183180660 -14014772 + B3 SINE B2 1 204 -12 4 1982 239 194 0 114 chr1 183180992 183181062 -14014370 + 4.5SRNA scRNA scRNA 25 86 -8 4 1982 430 179 158 0 chr1 183181010 183181105 -14014327 + B1_Mur2 SINE Alu 40 149 0 4 1982 886 205 27 81 chr1 183181114 183181203 -14014229 + B3 SINE B2 3 78 -138 4 1982 4039 151 20 38 chr1 183181203 183181908 -14013524 + RLTR17 LTR ERVK 1 692 0 4 1982 886 206 26 82 chr1 183181908 183182027 -14013405 + B3 SINE B2 79 198 0 4 1982 290 309 12 12 chr1 183182027 183182109 -14013323 + ID4 SINE ID 2 83 0 4 1982 749 94 248 0 chr1 183183041 183183158 -14012274 - B1_Mus1 SINE Alu 0 148 3 4 1982 470 252 63 31 chr1 183183272 183183399 -14012033 - B1F SINE Alu -1 148 18 4 1982 214 311 59 112 chr1 183183274 183183426 -14012006 - B4 SINE B4 -72 220 77 4 1982 1482 49 22 5 chr1 183183470 183183654 -14011778 + B2_Mm2 SINE B2 1 187 -8 4 1982 649 326 116 25 chr1 183183868 183184195 -14011237 - MER63D DNA AcHobo -703 358 2 4 1982 862 182 14 0 chr1 183184774 183184917 -14010515 + B1_Mus2 SINE Alu 2 146 -1 4 1982 194 91 0 29 chr1 183184925 183184959 -14010473 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 4 1982 1172 43 14 0 chr1 183185055 183185196 -14010236 - B1_Mm SINE Alu 0 147 5 4 1982 270 0 0 0 chr1 183185439 183185469 -14009963 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1982 279 300 32 32 chr1 183185916 183186009 -14009423 - MIRc SINE MIR -128 140 48 4 1982 187 231 0 37 chr1 183188005 183188059 -14007373 + MIRc SINE MIR 211 262 -6 4 1982 565 235 22 29 chr1 183188493 183188629 -14006803 + B1F SINE Alu 14 148 -1 4 1982 214 243 95 54 chr1 183188655 183188729 -14006703 + MIRc SINE MIR 74 150 -118 4 1982 334 325 96 15 chr1 183190362 183190564 -14004868 + MIR SINE MIR 44 257 -11 4 1982 195 69 0 0 chr1 183190964 183190993 -14004439 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1982 636 285 18 0 chr1 183191053 183191218 -14004214 - B4A SINE B4 -58 234 67 4 1982 1299 161 22 49 chr1 183191264 183191768 -14003664 - RMER17C LTR ERVK -8 402 1 4 1982 513 237 76 8 chr1 183191926 183192045 -14003387 + B1F SINE Alu 22 148 -1 4 1982 589 263 7 22 chr1 183192671 183192807 -14002625 - B1_Mur1 SINE Alu 0 149 16 4 1982 343 333 6 39 chr1 183192676 183192832 -14002600 - ID_B1 SINE B4 -3 221 71 4 1982 401 176 10 115 chr1 183193222 183193318 -14002114 - B1_Mur1 SINE Alu 0 149 64 4 1982 240 245 133 26 chr1 183193406 183193519 -14001913 + MLT1A1 LTR MaLR 272 396 -12 4 1982 2972 15 0 43 chr1 183193656 183194008 -14001424 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1982 54333 20 16 1 chr1 183194008 183200385 -13995047 - IAPEz-int LTR ERVK 0 6481 8 4 1982 2972 15 0 43 chr1 183200385 183200737 -13994695 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1982 1592 47 16 0 chr1 183200857 183201048 -13994384 + B2_Mm2 SINE B2 1 194 -1 4 1982 387 0 0 0 chr1 183202010 183202053 -13993379 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1982 274 186 16 63 chr1 183202061 183202124 -13993308 - B3 SINE B2 -156 60 1 4 1982 200 125 0 48 chr1 183202492 183202534 -13992898 + C-rich Low_complexity Low_complexity 4 43 0 4 1982 373 319 75 14 chr1 183202534 183202680 -13992752 - HAL1-3A_ME LINE L1 -420 2438 2284 5 1982 185 154 26 0 chr1 183202684 183202723 -13992709 + CT-rich Low_complexity Low_complexity 3 42 0 5 1982 182 105 0 26 chr1 183203333 183203372 -13992060 + (CCCCCG)n Simple_repeat Simple_repeat 5 42 0 5 1982 21 36 0 0 chr1 183203737 183203765 -13991667 + AT_rich Low_complexity Low_complexity 1 28 0 5 1982 220 200 0 20 chr1 183203777 183203828 -13991604 + B3A SINE B2 3 52 -146 5 1982 207 0 0 0 chr1 183203982 183204005 -13991427 + (C)n Simple_repeat Simple_repeat 1 23 0 5 1982 190 291 18 18 chr1 183204066 183204122 -13991310 - MIRb SINE MIR -176 92 37 5 1982 1064 235 70 43 chr1 183204278 183204652 -13990780 - L1MA6 LINE L1 -130 6170 5787 5 1982 447 101 0 0 chr1 183204769 183204848 -13990584 + (TATG)n Simple_repeat Simple_repeat 2 80 0 5 1982 363 188 29 0 chr1 183204851 183204920 -13990512 - ID4_ SINE ID -7 76 6 5 1982 593 253 114 17 chr1 183204937 183205227 -13990205 - L1MA6 LINE L1 -842 5301 4984 5 1982 476 205 13 0 chr1 183205229 183205307 -13990125 - ID4_ SINE ID -2 81 3 5 1982 487 113 50 16 chr1 183205324 183205427 -13990005 + B1_Mur3 SINE Alu 1 147 -2 5 1982 192 125 0 0 chr1 183205427 183205459 -13989973 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 5 1982 252 0 0 0 chr1 183205457 183205485 -13989947 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1982 538 240 25 59 chr1 183205496 183205579 -13989853 - L1MA6 LINE L1 -1263 4880 4804 5 1982 3175 49 34 3 chr1 183205579 183205967 -13989465 + MTB LTR MaLR 1 400 0 5 1982 538 247 31 63 chr1 183205967 183206118 -13989314 - L1MA6 LINE L1 -1340 4803 4654 5 1982 374 278 111 48 chr1 183206372 183206561 -13988871 - Charlie7 DNA MER1_type -1909 703 503 5 1982 1159 117 0 6 chr1 183206895 183207058 -13988374 + B2_Mm2 SINE B2 3 164 -31 5 1982 292 164 0 18 chr1 183207135 183207191 -13988241 + B2_Mm2 SINE B2 47 101 -94 5 1982 34 0 0 0 chr1 183207213 183207247 -13988185 + AT_rich Low_complexity Low_complexity 1 34 0 5 1982 686 172 16 47 chr1 183207258 183207386 -13988046 + B1_Mur1 SINE Alu 2 125 -24 5 1982 446 222 151 0 chr1 183207411 183207537 -13987895 - B3 SINE B2 -71 145 1 5 1982 1816 292 80 30 chr1 183207539 183208512 -13986920 - L1M2 LINE L1 -978 5867 4846 5 1982 889 162 12 0 chr1 183208512 183208685 -13986747 + CT-rich Low_complexity Low_complexity 4 178 0 5 1982 1447 247 25 28 chr1 183208944 183209344 -13986088 - Lx9 LINE L1 -287 7357 6959 5 1982 1144 298 127 32 chr1 183209365 183209444 -13985988 - L1M2 LINE L1 -2081 4764 4684 5 1982 3775 137 19 146 chr1 183209444 183210264 -13985168 - RMER6D LTR ERVK 0 720 5 5 1982 1144 298 127 32 chr1 183210264 183210958 -13984474 - L1M2 LINE L1 -2162 4683 3918 5 1982 891 192 84 6 chr1 183211090 183211268 -13984164 - B3 SINE B2 -13 203 12 5 1982 225 283 66 40 chr1 183211495 183211646 -13983786 - L1M2 LINE L1 -4185 2664 2510 5 1982 300 98 0 0 chr1 183211731 183211772 -13983660 - B3A SINE B2 -156 42 2 5 1982 593 206 0 9 chr1 183214125 183214233 -13981199 + B1F SINE Alu 36 142 -7 5 1982 345 283 0 16 chr1 183214282 183214404 -13981028 + A-rich Low_complexity Low_complexity 3 122 0 5 1982 4674 40 0 2 chr1 183216796 183217372 -13978060 - MT-int LTR MaLR -81 1017 443 5 1982 352 280 157 54 chr1 183217463 183217667 -13977765 + MLT2B3 LTR ERVL 289 513 -41 5 1982 1505 67 0 5 chr1 183218002 183218197 -13977235 - B2_Mm2 SINE B2 0 195 2 5 1982 942 234 33 60 chr1 183218623 183218959 -13976473 - RLTR15 LTR ERVK -32 327 1 5 1982 234 0 0 0 chr1 183219481 183219507 -13975925 + (G)n Simple_repeat Simple_repeat 1 26 0 5 1982 273 324 9 26 chr1 183220205 183220319 -13975113 + MLT1K LTR MaLR 467 578 -17 5 1982 1497 206 102 6 chr1 183220804 183221136 -13974296 - ORR1C2 LTR MaLR 0 384 21 5 1982 338 325 146 71 chr1 183221626 183221934 -13973498 + L1ME4a LINE L1 5793 6123 -1 5 1982 1322 246 82 18 chr1 183222730 183223131 -13972301 + BGLII_B LTR ERVK 5 431 -10 5 1982 678 322 50 26 chr1 183223363 183223666 -13971766 + ORR1E LTR MaLR 1 310 -49 5 1982 692 240 58 17 chr1 183224627 183224802 -13970630 - B3A SINE B2 -8 208 22 5 1982 927 121 0 118 chr1 183224815 183224984 -13970448 + ORR1C2 LTR MaLR 3 151 -223 5 1982 1275 34 0 0 chr1 183224988 183225135 -13970297 + B1_Mm SINE Alu 1 147 0 5 1982 564 95 0 0 chr1 183225135 183225219 -13970213 + (A)n Simple_repeat Simple_repeat 1 84 0 5 1982 762 179 6 12 chr1 183225249 183225419 -13970013 + CT-rich Low_complexity Low_complexity 3 171 0 5 1982 1084 146 23 55 chr1 183225419 183225636 -13969796 + ORR1C2 LTR MaLR 174 383 -1 5 1982 230 357 84 100 chr1 183225888 183226149 -13969283 - L2c LINE L2 -1 3386 3130 5 1982 735 222 39 11 chr1 183226665 183226847 -13968585 - B3A SINE B2 -11 187 1 5 1982 345 288 82 76 chr1 183226856 183227014 -13968418 + MTEa-int LTR MaLR 1419 1577 -3 5 1982 526 250 37 102 chr1 183227017 183227204 -13968228 + MTEa LTR MaLR 1 175 -204 5 1982 213 39 0 0 chr1 183227219 183227245 -13968187 + (GGAGAA)n Simple_repeat Simple_repeat 1 26 0 5 1982 1218 98 40 6 chr1 183227364 183227539 -13967893 + B2_Mm2 SINE B2 1 181 -14 5 1982 444 322 117 90 chr1 183228000 183228376 -13967056 + MLT1B LTR MaLR 2 387 -80 5 1982 246 304 130 22 chr1 183228531 183228669 -13966763 - RMER15 LTR ERVL -1 574 422 5 1982 231 342 56 48 chr1 183229548 183229674 -13965758 + L2b LINE L2 3249 3375 0 5 1982 323 0 48 0 chr1 183230342 183230384 -13965048 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1982 1297 203 236 75 chr1 183230580 183231098 -13964334 - MT2B LTR ERVL 0 601 1 5 1982 395 262 12 0 chr1 183231212 183231296 -13964136 + RSINE1 SINE B4 41 125 -40 5 1982 192 77 0 0 chr1 183231757 183231783 -13963649 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1982 578 289 78 67 chr1 183231794 183231807 -13963625 + MamRep1161 DNA TcMar 72 145 -812 5 1982 585 297 52 45 chr1 183231807 183232096 -13963336 + MamRep1161 DNA Tigger 165 455 -502 5 1982 578 289 78 67 chr1 183232096 183232139 -13963293 + MamRep1161 DNA TcMar 146 420 -537 5 1982 486 285 74 37 chr1 183232160 183232375 -13963057 + MamRep1161 DNA TcMar 406 628 -329 5 1982 206 136 23 0 chr1 183232941 183232985 -13962447 + (CCCCG)n Simple_repeat Simple_repeat 3 47 0 5 1982 228 311 0 0 chr1 183233425 183233486 -13961946 - MLT1N2 LTR MaLR -1 561 501 5 1982 255 290 0 92 chr1 183233754 183233830 -13961602 + MER21B LTR ERV1 16 84 -779 5 1982 7882 83 13 12 chr1 183234393 183236149 -13959283 + L1VL2 LINE L1 282 2040 -1575 5 1982 988 278 36 11 chr1 183237021 183237493 -13957939 - L1M2 LINE L1 -1455 4688 4205 5 1982 180 176 0 0 chr1 183237895 183237929 -13957503 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 5 1982 362 331 14 34 chr1 183238126 183238273 -13957159 + HERV16-int LTR ERVL 410 553 -4443 5 247 301 375 52 13 chr1 183238589 183238821 -13956611 + HERV16-int LTR ERVL 970 1210 -3786 5 1983 1147 220 9 5 chr1 183239770 183239985 -13955447 + B3 SINE B2 1 216 0 5 1983 222 37 0 0 chr1 183240204 183240231 -13955201 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1983 1671 11 21 0 chr1 183240233 183240422 -13955010 - B2_Mm1a SINE B2 0 193 1 5 1983 367 241 27 93 chr1 183240458 183240636 -13954796 + ORR1E LTR MaLR 9 160 -210 5 1983 261 208 164 14 chr1 183240638 183240711 -13954721 + ORR1E LTR MaLR 296 379 0 5 1983 285 305 62 8 chr1 183240918 183241047 -13954385 + ERVL-B4-int LTR ERVL 4111 4246 -1468 5 1983 809 172 160 11 chr1 183241645 183241833 -13953599 - B3 SINE B2 0 216 1 5 1983 1109 132 0 71 chr1 183241913 183242109 -13953323 + B2_Mm2 SINE B2 6 187 -8 5 1983 745 206 174 0 chr1 183242114 183242298 -13953134 + B3 SINE B2 1 216 0 5 1983 234 219 15 59 chr1 183242803 183242871 -13952561 + L2c LINE L2 3254 3318 -69 5 1983 1953 99 14 122 chr1 183242884 183243253 -13952179 + ORR1A4 LTR MaLR 1 329 0 5 1983 1349 145 23 9 chr1 183243750 183243966 -13951466 + URR1B DNA MER1_type 7 225 0 5 1983 293 372 37 11 chr1 183244554 183244744 -13950688 - MIR SINE MIR -3 259 65 5 1983 296 257 14 41 chr1 183244855 183244928 -13950504 - ID SINE ID -150 74 4 5 1983 1272 215 107 30 chr1 183245013 183245378 -13950054 - ORSL-2b DNA Tip100 -16 492 100 5 1983 410 255 104 0 chr1 183245813 183245919 -13949513 - PB1D10 SINE Alu 0 117 1 5 1983 183 80 0 0 chr1 183245972 183245997 -13949435 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1983 226 326 52 21 chr1 183246059 183246156 -13949276 + MIR SINE MIR 82 181 -81 5 1983 247 277 8 16 chr1 183247845 183247966 -13947466 + CT-rich Low_complexity Low_complexity 4 123 0 5 1983 261 283 0 0 chr1 183248066 183248126 -13947306 + ID4_ SINE ID 17 76 -7 5 1983 288 250 0 11 chr1 183248195 183248288 -13947144 - L1ME3B LINE L1 -222 6018 5927 5 1983 226 189 36 36 chr1 183248437 183248492 -13946940 - L1ME3B LINE L1 -517 5723 5669 5 1983 301 279 57 23 chr1 183248667 183248843 -13946589 - L1ME3B LINE L1 -700 5478 5297 5 1983 216 0 0 0 chr1 183248930 183248954 -13946478 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 5 1983 791 32 0 0 chr1 183248954 183249049 -13946383 - B1_Mus2 SINE Alu -2 145 51 5 1983 290 227 62 62 chr1 183248995 183249050 -13946382 - RLTR25B LTR ERVK -519 509 453 5 1983 234 0 0 0 chr1 183249050 183249076 -13946356 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 1983 290 227 62 62 chr1 183249076 183249100 -13946332 - RLTR25B LTR ERVK -576 452 430 5 1983 837 189 70 11 chr1 183249161 183249348 -13946084 - B3A SINE B2 0 198 1 5 1983 302 292 236 5 chr1 183249617 183249837 -13945595 + LTR16B1 LTR ERVL 120 390 -90 5 1983 1986 107 134 143 chr1 183250405 183250830 -13944602 + MTC LTR MaLR 1 421 0 5 1983 480 301 115 86 chr1 183251868 183252217 -13943215 - ORR1E LTR MaLR 0 359 1 5 1983 262 305 142 9 chr1 183252232 183252338 -13943094 - PB1 SINE Alu -1 126 7 5 1983 208 83 0 77 chr1 183252364 183252378 -13943054 + polypyrimidine Low_complexity Low_complexity 35 48 0 5 1983 3354 35 5 2 chr1 183252378 183252773 -13942659 + MTA_Mm LTR MaLR 1 396 0 5 1983 208 83 0 77 chr1 183252773 183252810 -13942622 + polypyrimidine Low_complexity Low_complexity 2 34 0 5 1983 550 316 145 48 chr1 183252885 183253134 -13942298 - B4 SINE B4 -18 274 2 5 1983 228 77 58 0 chr1 183254156 183254208 -13941224 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 5 1983 528 59 0 0 chr1 183254286 183254354 -13941078 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1983 207 309 0 18 chr1 183254511 183254567 -13940865 + MIRm SINE MIR 205 259 -17 5 1983 208 195 24 24 chr1 183254526 183254568 -13940864 + L2c LINE L2 3328 3369 -18 6 1983 198 171 57 0 chr1 183254537 183254572 -13940860 + MIRb SINE MIR 224 260 -8 6 1983 22 0 0 0 chr1 183255403 183255425 -13940007 + AT_rich Low_complexity Low_complexity 1 22 0 6 1983 234 319 25 8 chr1 183255738 183255858 -13939574 - L1ME3B LINE L1 -290 5950 5829 6 1983 1050 197 48 0 chr1 183256469 183256677 -13938755 - ORR1D1 LTR MaLR -3 371 154 6 1983 625 44 44 0 chr1 183256677 183256768 -13938664 + (GGGA)n Simple_repeat Simple_repeat 4 98 0 6 1983 577 241 14 35 chr1 183256908 183257050 -13938382 - B3A SINE B2 -8 190 52 6 1983 1309 74 0 17 chr1 183257135 183257313 -13938119 - B2_Mm2 SINE B2 -20 175 1 6 1983 1805 228 58 15 chr1 183257316 183257713 -13937719 - MTD LTR MaLR -5 414 1 6 1983 324 324 57 40 chr1 183258021 183258186 -13937246 - ORR1D1 LTR MaLR -189 181 18 6 1983 584 243 127 55 chr1 183258231 183258484 -13936948 - HAL1 LINE L1 -733 1774 1504 6 1983 398 176 27 0 chr1 183258494 183258568 -13936864 - PB1 SINE Alu -4 123 48 6 1983 347 299 70 13 chr1 183259211 183259367 -13936065 - HAL1 LINE L1 -1724 783 619 6 1983 371 208 111 30 chr1 183259780 183259879 -13935553 - PB1D10 SINE Alu -1 116 10 6 1983 215 171 0 0 chr1 183260190 183260225 -13935207 + B1_Mur4 SINE Alu 4 38 -112 6 1983 573 15 0 0 chr1 183260240 183260306 -13935126 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1983 339 25 0 0 chr1 183260306 183260345 -13935087 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1983 1098 65 0 0 chr1 183260552 183260690 -13934742 - B1_Mur4 SINE Alu -6 144 7 6 1983 783 206 0 0 chr1 183261505 183261685 -13933747 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1983 1186 228 30 37 chr1 183262045 183262345 -13933087 - ORR1D2 LTR MaLR -18 352 55 6 1983 262 264 36 54 chr1 183262679 183262791 -13932641 - MER5B DNA MER1_type -41 137 28 6 1983 228 152 43 0 chr1 183263389 183263435 -13931997 + Charlie10 DNA MER1_type 2764 2811 -11 6 1983 1904 178 10 46 chr1 183263733 183263930 -13931502 - ORR1D1 LTR MaLR 0 374 185 6 1983 189 74 0 0 chr1 183263930 183263957 -13931475 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1983 1904 178 10 46 chr1 183263957 183264147 -13931285 - ORR1D1 LTR MaLR -190 184 1 6 1983 453 19 0 0 chr1 183264922 183264976 -13930456 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1983 2732 105 99 89 chr1 183266130 183266644 -13928788 + MURVY-LTR LTR ERV1 1 519 0 6 1983 325 261 57 0 chr1 183267417 183267505 -13927927 - B1F1 SINE Alu -51 98 6 6 1983 266 294 0 32 chr1 183267421 183267516 -13927916 - ID_B1 SINE B4 -52 172 81 6 1983 1458 191 78 48 chr1 183267538 183267734 -13927698 - ORR1D1 LTR MaLR -5 369 168 6 1983 573 28 0 0 chr1 183267734 183267805 -13927627 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1983 1458 191 78 48 chr1 183267805 183267966 -13927466 - ORR1D1 LTR MaLR -207 167 1 6 1983 333 312 91 54 chr1 183268657 183268843 -13926589 + MLT1C LTR MaLR 60 252 -215 6 1983 274 308 59 17 chr1 183268861 183268980 -13926452 + MLT1C LTR MaLR 289 412 -55 6 1983 207 0 0 0 chr1 183269487 183269510 -13925922 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1983 743 255 45 54 chr1 183269869 183270205 -13925227 - Lx9 LINE L1 -20 7624 7292 6 1983 2763 77 65 20 chr1 183270288 183270688 -13924744 + Lx2 LINE L1 6574 6991 -6 6 1983 319 260 20 40 chr1 183270698 183270798 -13924634 + Lx9 LINE L1 7228 7325 -319 6 1983 320 296 42 90 chr1 183271620 183271809 -13923623 - ORR1E LTR MaLR -5 354 175 6 1983 464 176 0 42 chr1 183271810 183271905 -13923527 - L1M2 LINE L1 -921 5222 5132 6 1983 834 329 30 3 chr1 183271894 183272232 -13923200 + L1M2 LINE L1 4767 5113 -1030 6 1983 280 293 97 55 chr1 183272253 183272470 -13922962 - MLT1A1 LTR MaLR -151 257 32 6 1983 203 256 98 22 chr1 183273333 183273425 -13922007 + MIRc SINE MIR 60 158 -110 6 1983 859 73 0 0 chr1 183274199 183274309 -13921123 + B1_Mus1 SINE Alu 39 148 0 6 1983 225 0 0 0 chr1 183274309 183274334 -13921098 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1983 1006 253 208 11 chr1 183274486 183274968 -13920464 + Lx8 LINE L1 6026 6601 -872 6 1983 21 82 0 0 chr1 183274968 183275017 -13920415 + AT_rich Low_complexity Low_complexity 1 49 0 6 1983 457 262 39 23 chr1 183275064 183275193 -13920239 - ORR1E LTR MaLR -228 131 1 6 1983 355 294 119 0 chr1 183276166 183276275 -13919157 + RSINE1 SINE B4 4 125 -40 6 1983 383 0 21 0 chr1 183276311 183276358 -13919074 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1983 1068 251 53 19 chr1 183276386 183276650 -13918782 - B4 SINE B4 -19 273 1 6 1983 359 349 62 28 chr1 183276753 183276930 -13918502 - MLT1J LTR MaLR -88 424 242 6 1983 352 209 256 0 chr1 183277374 183277460 -13917972 - PB1D10 SINE Alu -9 108 1 6 1983 266 312 0 52 chr1 183278471 183278586 -13916846 - MamGypLTR1a LTR Gypsy -22 762 654 6 1983 31 26 0 0 chr1 183279122 183279160 -13916272 + AT_rich Low_complexity Low_complexity 1 38 0 6 1983 310 277 143 0 chr1 183279718 183279837 -13915595 + MER34A1 LTR ERV1 5 140 -431 6 1983 689 273 39 30 chr1 183280039 183280306 -13915126 + MER34A1 LTR ERV1 242 516 -71 6 1983 23 0 0 0 chr1 183280393 183280416 -13915016 + AT_rich Low_complexity Low_complexity 1 23 0 6 1983 27 29 0 0 chr1 183280431 183280465 -13914967 + AT_rich Low_complexity Low_complexity 1 34 0 6 1983 335 265 51 0 chr1 183281019 183281117 -13914315 + Lx9 LINE L1 5854 5956 -1688 6 1983 2208 251 70 30 chr1 183281114 183281838 -13913594 + Lx8 LINE L1 6310 7062 -411 6 1983 225 65 0 0 chr1 183282776 183282807 -13912625 + (CAG)n Simple_repeat Simple_repeat 3 33 0 6 1983 1142 70 0 6 chr1 183285078 183285236 -13910196 + (GGAGA)n Simple_repeat Simple_repeat 5 161 0 6 1983 216 0 0 0 chr1 183285520 183285544 -13909888 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1983 441 0 0 0 chr1 183285876 183285925 -13909507 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1983 459 0 0 0 chr1 183286362 183286413 -13909019 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1983 361 317 32 65 chr1 183286597 183286752 -13908680 - MIRb SINE MIR -99 169 20 6 1983 360 0 0 0 chr1 183287126 183287166 -13908266 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1983 306 0 0 0 chr1 183287166 183287199 -13908233 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1983 987 136 0 0 chr1 183287469 183287683 -13907749 + (TCTA)n Simple_repeat Simple_repeat 1 214 0 6 1983 896 169 229 0 chr1 183287702 183287868 -13907564 - B3 SINE B2 -11 205 2 6 1983 459 0 0 0 chr1 183288666 183288717 -13906715 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1983 2355 134 63 5 chr1 183289611 183289994 -13905438 + RMER4B LTR ERVK 3 407 -178 6 1983 387 280 132 78 chr1 183290305 183290653 -13904779 - MLT1A LTR MaLR -2 372 1 6 1983 1565 123 73 22 chr1 183292408 183292683 -13902749 - ORR1C2 LTR MaLR -8 376 88 6 1983 725 296 86 47 chr1 183292678 183292912 -13902520 - B4A SINE B4 -49 243 1 6 1983 689 258 30 42 chr1 183292962 183293128 -13902304 - RSINE1 SINE B4 0 165 2 6 1983 1089 251 26 145 chr1 183293762 183294190 -13901242 + MTE2a LTR MaLR 1 377 -2 6 1983 315 0 0 0 chr1 183294558 183294593 -13900839 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1983 426 39 0 0 chr1 183294593 183294644 -13900788 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1983 268 351 27 0 chr1 183295835 183295909 -13899523 + ID4_ SINE ID 6 81 -2 6 1983 619 245 152 84 chr1 183296259 183296674 -13898758 - L1MB3 LINE L1 0 6183 5741 6 1983 795 315 79 99 chr1 183296677 183297233 -13898199 + MLT2B3 LTR ERVL 4 548 -6 6 1983 407 275 56 0 chr1 183297238 183297380 -13898052 - L1MB3 LINE L1 -430 5750 5601 6 1983 564 305 137 32 chr1 183297480 183297758 -13897674 - ORR1E LTR MaLR -1 358 52 6 1983 1103 200 5 27 chr1 183298379 183298600 -13896832 + B3 SINE B2 1 216 0 6 1983 204 295 10 50 chr1 183299196 183299296 -13896136 + CT-rich Low_complexity Low_complexity 5 100 0 6 1983 315 122 0 0 chr1 183300263 183300312 -13895120 + (CCTG)n Simple_repeat Simple_repeat 3 51 0 6 1983 396 216 58 0 chr1 183300322 183300418 -13895014 - B1_Mur3 SINE Alu -5 144 1 6 1983 329 206 11 0 chr1 183301107 183301199 -13894233 + CT-rich Low_complexity Low_complexity 1 93 0 6 1983 1130 243 29 0 chr1 183301840 183302079 -13893353 + B4 SINE B4 44 289 -3 6 1983 570 146 0 0 chr1 183302314 183302410 -13893022 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 6 1983 1222 62 0 0 chr1 183302410 183302556 -13892876 - B1_Mus1 SINE Alu -1 147 2 6 1983 3301 85 12 26 chr1 183303266 183303774 -13891658 + RLTR19-int LTR ERVK 1512 2012 -4125 6 1983 281 202 158 37 chr1 183303922 183304004 -13891428 + PB1D10 SINE Alu 25 116 -1 6 1983 959 221 90 40 chr1 183304045 183304323 -13891109 + B4A SINE B4 1 292 0 6 1983 334 243 54 7 chr1 183304448 183304472 -13890960 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 6 1983 1263 87 48 16 chr1 183304472 183304659 -13890773 - B2_Mm2 SINE B2 -1 194 2 6 1983 334 243 54 7 chr1 183304659 183304783 -13890649 + (TCTA)n Simple_repeat Simple_repeat 1 130 0 6 1983 331 301 56 38 chr1 183307183 183307388 -13888044 - L1MEe LINE L1 -4033 2133 1990 6 1983 392 120 9 130 chr1 183308170 183308285 -13887147 + Lx LINE L1 6554 6654 0 6 1983 844 162 11 17 chr1 183308350 183308526 -13886906 + GA-rich Low_complexity Low_complexity 3 177 0 6 1983 207 263 53 31 chr1 183308975 183309163 -13886269 - MIR SINE MIR -41 235 42 6 1983 294 50 0 0 chr1 183309269 183309309 -13886123 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1983 241 254 75 0 chr1 183311581 183311648 -13883784 - ORR1E LTR MaLR -256 103 32 6 1983 237 184 0 0 chr1 183312236 183312274 -13883158 - ID4_ SINE ID -45 38 1 6 1983 1382 194 77 67 chr1 183312572 183312958 -13882474 - RLTR41 LTR ERV1 -14 432 1 6 1983 878 306 155 25 chr1 183314005 183314451 -13880981 + MLT1D LTR MaLR 1 504 -1 6 1983 228 250 84 32 chr1 183315088 183315183 -13880249 - LTR50 LTR ERVL -642 153 54 7 1983 518 194 18 35 chr1 183315525 183315696 -13879736 + G-rich Low_complexity Low_complexity 6 173 0 7 1983 816 131 28 6 chr1 183315697 183315873 -13879559 + GA-rich Low_complexity Low_complexity 1 180 0 7 1983 189 135 58 0 chr1 183316690 183316742 -13878690 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1983 186 197 50 25 chr1 183316764 183316925 -13878507 + (CATA)n Simple_repeat Simple_repeat 2 166 0 7 1983 201 221 27 75 chr1 183316947 183317088 -13878344 + (CATA)n Simple_repeat Simple_repeat 4 137 0 7 1983 1146 67 0 0 chr1 183317088 183317223 -13878209 + B1_Mus1 SINE Alu 2 136 -12 7 1983 201 39 0 0 chr1 183317224 183317250 -13878182 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1983 336 176 38 76 chr1 183317250 183317437 -13877995 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 7 1983 312 247 78 6 chr1 183317353 183317520 -13877912 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1983 214 119 15 92 chr1 183317643 183317708 -13877724 + GA-rich Low_complexity Low_complexity 3 62 0 7 1983 247 232 86 34 chr1 183317709 183317976 -13877456 - RMER17D LTR ERVK -416 473 193 7 1983 3081 132 16 0 chr1 183318532 183318971 -13876461 + RLTR41 LTR ERV1 1 446 0 7 1983 980 273 17 17 chr1 183320097 183320384 -13875048 - B4 SINE B4 -4 288 2 7 1983 635 298 116 97 chr1 183320723 183321084 -13874348 + L4 LINE RTE 659 1026 -1003 7 1983 456 235 118 0 chr1 183321397 183321499 -13873933 - MTEa LTR MaLR -219 160 47 7 1983 1070 289 132 0 chr1 183321523 183321658 -13873774 - MTE2b LTR MaLR -11 368 210 7 1983 675 37 0 0 chr1 183321658 183321740 -13873692 + (GA)n Simple_repeat Simple_repeat 2 83 0 7 1983 1070 289 132 0 chr1 183321740 183321929 -13873503 - MTE2b LTR MaLR -170 209 2 7 1983 634 270 56 48 chr1 183322501 183322750 -13872682 + RMER15 LTR ERVL 324 574 -1 7 1983 311 180 82 0 chr1 183324620 183324742 -13870690 + CT-rich Low_complexity Low_complexity 4 135 0 7 1983 372 258 84 72 chr1 183324971 183325138 -13870294 - MIRb SINE MIR -97 171 3 7 1983 228 369 35 18 chr1 183325225 183325338 -13870094 - MIR SINE MIR -81 181 67 7 1983 375 236 53 40 chr1 183325708 183325865 -13869567 - ORR1C2 LTR MaLR -238 146 1 7 1983 583 289 182 58 chr1 183327074 183327470 -13867962 - MLT1C LTR MaLR 0 467 23 7 1983 1523 125 4 26 chr1 183327558 183327788 -13867644 + URR1B DNA MER1_type 1 225 0 7 1983 972 204 21 0 chr1 183328358 183328544 -13866888 - B3 SINE B2 0 216 27 7 1983 1237 41 0 0 chr1 183328571 183328717 -13866715 - B1_Mm SINE Alu 0 147 2 7 1983 893 239 59 115 chr1 183328776 183329097 -13866335 + MTE2a LTR MaLR 39 341 -38 7 1983 372 59 0 0 chr1 183329100 183329151 -13866281 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1983 245 29 0 29 chr1 183330256 183330283 -13865149 + (TTC)n Simple_repeat Simple_repeat 1 27 0 7 1983 1443 45 0 0 chr1 183330283 183330462 -13864970 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 7 1983 245 29 0 29 chr1 183330462 183330469 -13864963 + (TTC)n Simple_repeat Simple_repeat 3 9 0 7 1983 313 12 128 0 chr1 183330466 183330552 -13864880 + (TCCC)n Simple_repeat Simple_repeat 2 98 0 7 1983 344 372 19 6 chr1 183331250 183331407 -13864025 + L1MD LINE L1 3372 3530 -2616 7 1983 282 194 0 0 chr1 183331537 183331587 -13863845 + PB1 SINE Alu 61 118 -9 7 1983 376 259 12 0 chr1 183331615 183331696 -13863736 + ID4_ SINE ID 2 83 0 7 1983 1079 323 82 14 chr1 183331731 183332356 -13863076 + L1ME1 LINE L1 5315 5981 -198 7 1983 198 0 0 0 chr1 183332747 183332769 -13862663 + (CCCCCA)n Simple_repeat Simple_repeat 4 25 0 7 1983 186 403 53 13 chr1 183333334 183333485 -13861947 + L3 LINE CR1 3954 4110 -379 7 1983 670 294 109 15 chr1 183333701 183333967 -13861465 - B4A SINE B4 -1 291 1 7 1983 180 97 0 0 chr1 183334034 183334065 -13861367 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 7 1983 1080 78 0 0 chr1 183334070 183334211 -13861221 - B1_Mus2 SINE Alu -6 141 1 7 1983 1306 111 10 0 chr1 183334220 183334428 -13861004 - Lx2 LINE L1 -14 6983 6774 7 1983 612 324 21 51 chr1 183334603 183334840 -13860592 - MER58B DNA MER1_type -104 237 8 7 1983 281 305 9 21 chr1 183335225 183335330 -13860102 - MTEa LTR MaLR -5 374 275 7 1983 843 200 71 31 chr1 183335538 183335734 -13859698 + ID_B1 SINE B4 21 224 0 7 1983 189 107 0 0 chr1 183336347 183336375 -13859057 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1983 198 0 0 0 chr1 183338100 183338122 -13857310 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1983 227 222 0 0 chr1 183338136 183338181 -13857251 - ID4 SINE ID -28 55 11 7 1983 204 125 0 0 chr1 183339054 183339086 -13856346 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1983 370 328 85 50 chr1 183339232 183339431 -13856001 + B3 SINE B2 6 211 -5 7 1983 562 244 114 13 chr1 183339430 183339588 -13855844 - B4A SINE B4 -78 214 41 7 1983 234 91 0 0 chr1 183341991 183342024 -13853408 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 7 1983 609 268 0 0 chr1 183342031 183342169 -13853263 - ID_B1 SINE B4 -6 218 81 7 1983 1547 192 37 80 chr1 183342362 183342763 -13852669 - ORR1C2 LTR MaLR 0 384 1 7 1983 311 220 0 32 chr1 183342848 183342942 -13852490 - ID4 SINE ID -68 84 1 7 1983 315 296 109 15 chr1 183344457 183344511 -13850921 - MER45A DNA Tip100 0 178 122 7 1983 444 19 0 0 chr1 183344511 183344564 -13850868 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1983 315 296 109 15 chr1 183344564 183344646 -13850786 - MER45A DNA Tip100 -57 121 29 7 1983 297 299 21 124 chr1 183344873 183345018 -13850414 + MLT1G1 LTR MaLR 401 560 -19 7 1983 277 309 107 61 chr1 183345034 183345363 -13850069 - ORR1E LTR MaLR 0 378 24 7 1983 410 229 26 44 chr1 183346033 183346147 -13849285 - RSINE1 SINE B4 -19 146 35 7 1983 285 118 0 0 chr1 183346177 183346228 -13849204 + (T)n Simple_repeat Simple_repeat 1 51 0 7 1983 312 278 11 11 chr1 183346707 183346798 -13848634 - MIR SINE MIR -55 207 117 7 1983 207 0 0 0 chr1 183347665 183347688 -13847744 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1983 425 218 12 20 chr1 183348516 183348649 -13846783 + MLT2C2 LTR ERVL 4 136 -420 7 1983 304 215 0 15 chr1 183348652 183348718 -13846714 - MLT1A1 LTR MaLR 0 408 344 7 1983 594 63 0 0 chr1 183348898 183348977 -13846455 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1983 183 42 0 0 chr1 183349004 183349028 -13846404 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 7 1983 510 259 51 0 chr1 183349418 183349576 -13845856 - MER5B DNA MER1_type -8 170 5 7 1983 194 0 0 37 chr1 183350795 183350822 -13844610 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7 1983 331 326 70 138 chr1 183351012 183351396 -13844036 - MTEa LTR MaLR -21 358 1 7 1983 1111 254 27 68 chr1 183351995 183352362 -13843070 - MLT1B LTR MaLR -37 353 2 7 1983 510 354 72 11 chr1 183353289 183353552 -13841880 - MLT1A0 LTR MaLR 0 365 87 7 1983 251 369 27 9 chr1 183353946 183354058 -13841374 - RMER15 LTR ERVL -43 532 419 7 1983 1849 300 33 21 chr1 183354511 183355093 -13840339 + Tigger7 DNA MER2_type 1 589 -1902 7 1983 913 138 0 14 chr1 183355474 183355614 -13839818 + B1_Mur3 SINE Alu 1 138 -11 7 1983 840 147 0 0 chr1 183355957 183356107 -13839325 + (TC)n Simple_repeat Simple_repeat 2 151 0 7 1983 470 253 58 29 chr1 183356537 183356708 -13838724 + MER5B DNA MER1_type 1 176 -2 7 1983 414 0 0 0 chr1 183357343 183357389 -13838043 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1983 339 327 38 75 chr1 183357396 183357555 -13837877 - MT2A LTR ERVL -76 457 305 7 1983 450 339 23 0 chr1 183357692 183357822 -13837610 - MTEa LTR MaLR -244 135 3 7 1983 321 47 0 0 chr1 183358224 183358267 -13837165 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1983 276 354 31 8 chr1 183358398 183358526 -13836906 - L1MC4 LINE L1 -359 7683 7553 7 1983 474 18 0 0 chr1 183358945 183359000 -13836432 + (CAG)n Simple_repeat Simple_repeat 3 57 0 7 1983 1091 65 0 0 chr1 183360829 183360968 -13834464 - B1_Mus1 SINE Alu -8 140 2 7 1983 248 333 48 0 chr1 183361000 183361084 -13834348 - L2c LINE L2 0 3387 3300 7 1983 200 146 0 47 chr1 183361352 183361395 -13834037 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1983 220 229 0 0 chr1 183361722 183361770 -13833662 + T-rich Low_complexity Low_complexity 1 48 0 7 1983 1503 209 0 64 chr1 183361889 183362232 -13833200 - Lx4B LINE L1 -22 7036 6716 7 1983 327 221 0 0 chr1 183364429 183364497 -13830935 - ID4_ SINE ID -13 70 3 7 1983 276 185 0 0 chr1 183364509 183364569 -13830863 - PB1 SINE Alu -2 147 75 7 1983 239 0 0 31 chr1 183365613 183365645 -13829787 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1983 278 331 50 0 chr1 183367393 183367514 -13827918 - MLT1A1 LTR MaLR -262 146 20 7 1983 197 272 60 36 chr1 183368010 183368094 -13827338 - L2a LINE L2 0 3426 3341 7 1983 1943 194 8 8 chr1 183368458 183368832 -13826600 + ORR1D1 LTR MaLR 1 374 0 7 1983 426 121 0 0 chr1 183369124 183369190 -13826242 + (T)n Simple_repeat Simple_repeat 1 66 0 7 1984 460 265 59 22 chr1 183370168 183370303 -13825129 + RSINE1 SINE B4 2 141 -24 7 1984 238 196 18 0 chr1 183371167 183371223 -13824209 + C-rich Low_complexity Low_complexity 3 59 0 7 1984 219 225 0 0 chr1 183371436 183371476 -13823956 + G-rich Low_complexity Low_complexity 2 41 0 7 1984 198 258 167 73 chr1 183371861 183371957 -13823475 - MER5A DNA MER1_type -84 105 1 7 1984 534 222 34 17 chr1 183371963 183372082 -13823350 - MER5A1 DNA MER1_type -1 165 45 7 1984 186 321 19 0 chr1 183372266 183372319 -13823113 + MER5A DNA MER1_type 136 189 0 8 1984 286 263 29 121 chr1 183373560 183373733 -13821699 - ORR1E LTR MaLR -22 357 163 8 1984 324 0 0 0 chr1 183373733 183373769 -13821663 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1984 489 34 0 0 chr1 183373769 183373827 -13821605 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1984 286 312 169 47 chr1 183373827 183373956 -13821476 - ORR1E LTR MaLR -197 162 2 8 1984 871 253 30 61 chr1 183374758 183375053 -13820379 + B4A SINE B4 3 288 -4 8 1984 552 15 0 0 chr1 183375107 183375172 -13820260 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1984 26 0 0 0 chr1 183375780 183375806 -13819626 + AT_rich Low_complexity Low_complexity 1 26 0 8 1984 296 281 0 30 chr1 183376363 183376462 -13818970 + (TG)n Simple_repeat Simple_repeat 1 96 0 8 1984 458 299 107 40 chr1 183376474 183376706 -13818726 - B4A SINE B4 -2 290 50 8 1984 342 0 0 0 chr1 183376706 183376744 -13818688 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1984 458 299 107 40 chr1 183376744 183376783 -13818649 - B4A SINE B4 -243 49 1 8 1984 212 203 24 108 chr1 183376913 183376996 -13818436 - B1F1 SINE Alu 0 149 74 8 1984 332 336 25 0 chr1 183377509 183377628 -13817804 - MLT1I LTR MaLR 0 411 290 8 1984 528 276 97 0 chr1 183379029 183379174 -13816258 + RSINE1 SINE B4 3 161 -4 8 1984 183 80 0 0 chr1 183379187 183379212 -13816220 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1984 603 0 0 0 chr1 183379422 183379489 -13815943 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 1984 579 266 241 35 chr1 183380340 183380659 -13814773 - MTD LTR MaLR -21 398 14 8 1984 991 274 24 12 chr1 183380760 183381092 -13814340 + L1MB7 LINE L1 5705 6040 -144 8 1984 273 196 0 0 chr1 183381108 183381164 -13814268 + CT-rich Low_complexity Low_complexity 1 56 0 8 1984 440 285 2 33 chr1 183381164 183381308 -13814124 + L1MB7 LINE L1 6033 6174 0 8 1984 189 298 17 34 chr1 183381744 183381803 -13813629 - L2c LINE L2 -331 3056 2999 8 1984 423 0 0 0 chr1 183382534 183382581 -13812851 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1984 620 340 32 32 chr1 183382818 183383037 -13812395 - B4 SINE B4 -7 285 67 8 1984 243 337 129 17 chr1 183383170 183383348 -13812084 - MIRc SINE MIR -38 230 33 8 1984 650 291 111 69 chr1 183384217 183384523 -13810909 - ORR1E LTR MaLR -38 321 3 8 1984 200 307 56 11 chr1 183385722 183385811 -13809621 - MIR SINE MIR -94 168 76 8 1984 233 368 0 10 chr1 183387414 183387510 -13807922 + CT-rich Low_complexity Low_complexity 5 99 0 8 1984 192 77 0 0 chr1 183387511 183387537 -13807895 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 8 1984 281 266 37 25 chr1 183387545 183387626 -13807806 - ID4 SINE ID 0 83 2 8 1984 297 252 122 0 chr1 183387640 183387747 -13807685 - PB1 SINE Alu -7 120 1 8 1984 186 284 123 0 chr1 183387900 183387981 -13807451 + L2a LINE L2 3325 3415 -11 8 1984 197 311 68 0 chr1 183388012 183388086 -13807346 + L2b LINE L2 3297 3375 0 8 1984 1869 118 19 118 chr1 183388109 183388474 -13806958 - ORR1A4 LTR MaLR 0 329 1 8 1984 205 91 114 0 chr1 183390141 183390185 -13805247 + (CAAAC)n Simple_repeat Simple_repeat 3 51 0 8 1984 375 23 0 0 chr1 183390476 183390520 -13804912 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1984 234 265 0 0 chr1 183390724 183390792 -13804640 + A-rich Low_complexity Low_complexity 1 68 0 8 1984 206 128 0 25 chr1 183391021 183391061 -13804371 + A-rich Low_complexity Low_complexity 1 39 0 8 1984 357 62 0 59 chr1 183392811 183392879 -13802553 + (GGGGA)n Simple_repeat Simple_repeat 1 64 0 8 1984 314 316 119 8 chr1 183393803 183393937 -13801495 + MER63B DNA AcHobo 2 150 -286 8 1984 263 257 42 14 chr1 183394060 183394131 -13801301 + MER63B DNA AcHobo 297 369 -67 8 1984 377 240 124 10 chr1 183394584 183394681 -13800751 + PB1D10 SINE Alu 2 109 -8 8 1984 231 261 78 126 chr1 183394743 183394949 -13800483 + ORR1A3 LTR MaLR 33 228 -98 8 1984 329 260 142 76 chr1 183398584 183398809 -13796623 + MIRc SINE MIR 21 260 -8 8 1984 400 188 25 0 chr1 183398863 183398943 -13796489 + ID4 SINE ID 2 83 0 8 1984 285 358 42 52 chr1 183400284 183400496 -13794936 - MIRb SINE MIR -4 264 55 8 1984 243 291 26 26 chr1 183400653 183400766 -13794666 - Lx8 LINE L1 0 7473 7361 8 1984 1792 239 36 5 chr1 183400813 183401200 -13794232 + MTD LTR MaLR 21 419 0 8 1984 316 169 194 30 chr1 183401204 183401271 -13794161 - Lx8 LINE L1 -150 7323 7246 8 1984 1476 127 23 0 chr1 183401310 183401530 -13793902 + URR1B DNA MER1_type 1 225 0 8 1984 384 336 78 54 chr1 183401657 183401915 -13793517 + LTR52 LTR ERVL 117 380 -41 8 1984 247 311 77 45 chr1 183402063 183402218 -13793214 - MLT1J2 LTR MaLR -151 297 138 8 1984 624 221 0 0 chr1 183402218 183402367 -13793065 + CT-rich Low_complexity Low_complexity 2 150 0 8 1984 246 295 0 0 chr1 183402367 183402428 -13793004 - MLT1J2 LTR MaLR -326 118 58 8 1984 596 273 0 0 chr1 183402738 183402877 -13792555 + B1F SINE Alu 1 139 -10 8 1984 270 116 0 0 chr1 183402914 183402957 -13792475 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1984 690 276 75 72 chr1 183402961 183403325 -13792107 + ORR1E LTR MaLR 1 379 0 8 1984 200 266 24 16 chr1 183403377 183403503 -13791929 + (CATATA)n Simple_repeat Simple_repeat 3 129 0 8 1984 185 178 22 0 chr1 183404419 183404464 -13790968 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 8 1984 213 271 17 0 chr1 183404556 183404615 -13790817 + CT-rich Low_complexity Low_complexity 1 60 0 8 1984 262 242 0 0 chr1 183405406 183405472 -13789960 - ID2 SINE ID -16 67 2 8 1984 426 227 17 43 chr1 183405481 183405596 -13789836 - PB1 SINE Alu -2 125 14 8 1984 426 311 93 15 chr1 183405707 183406059 -13789373 - MLT1F LTR MaLR -16 544 184 8 1984 291 54 0 0 chr1 183407089 183407126 -13788306 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 8 1984 228 111 0 0 chr1 183408269 183408305 -13787127 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 8 1984 797 226 159 26 chr1 183408423 183408495 -13786937 + MER2 DNA MER2_type 1 72 -273 8 1984 1368 54 0 16 chr1 183408495 183408683 -13786749 + L1Md_F2 LINE L1 6398 6582 0 8 1984 797 226 159 26 chr1 183408683 183408803 -13786629 + MER2 DNA MER2_type 73 203 -142 8 1984 216 0 0 0 chr1 183408803 183408827 -13786605 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1984 797 226 159 26 chr1 183408827 183408865 -13786567 + MER2 DNA MER2_type 204 263 -82 8 1984 249 269 0 0 chr1 183409364 183409416 -13786016 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1984 475 278 266 9 chr1 183409418 183409647 -13785785 - B4A SINE B4 -2 290 3 8 1984 246 294 65 86 chr1 183409656 183409679 -13785753 + YREP_Mm Unknown Unknown 151 244 -1568 8 1984 566 252 7 35 chr1 183409679 183409823 -13785609 - ID_B1 SINE B4 -4 220 81 8 1984 246 294 65 86 chr1 183409823 183409842 -13785590 + YREP_Mm Unknown Unknown 245 332 -1480 8 1984 27 49 0 0 chr1 183409907 183409948 -13785484 + AT_rich Low_complexity Low_complexity 1 41 0 8 1984 249 353 57 24 chr1 183410561 183410773 -13784659 + LTR16A LTR ERVL 224 442 -9 8 1984 547 279 99 5 chr1 183411193 183411384 -13784048 + MIRb SINE MIR 23 231 -37 8 1984 1250 155 31 14 chr1 183413236 183413458 -13781974 - URR1A DNA MER1_type 0 226 1 8 1984 441 264 26 51 chr1 183414636 183414792 -13780640 - MER5B DNA MER1_type -1 177 26 8 1984 269 315 79 26 chr1 183414850 183414964 -13780468 - MER5A DNA MER1_type -61 128 9 8 1984 2916 64 57 0 chr1 183415388 183415777 -13779655 + RLTR10A LTR ERVK 1 411 0 8 1984 991 137 52 47 chr1 183415981 183416172 -13779260 - B2_Mm2 SINE B2 -3 192 1 8 1984 736 178 31 0 chr1 183416928 183417057 -13778375 + B1_Mus2 SINE Alu 15 147 0 8 1984 738 282 163 57 chr1 183417846 183418264 -13777168 + MLT1D LTR MaLR 3 464 -41 8 1984 195 42 0 0 chr1 183418274 183418298 -13777134 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1984 332 263 0 9 chr1 183420097 183420212 -13775220 + (TA)n Simple_repeat Simple_repeat 2 115 0 8 1984 387 98 207 0 chr1 183420256 183420338 -13775094 - Lx4A LINE L1 -1 7057 6959 8 1984 645 229 10 20 chr1 183420339 183420478 -13774954 - MT2A LTR ERVL -64 537 339 8 1984 1624 25 19 5 chr1 183420478 183420683 -13774749 + L1Md_F3 LINE L1 6377 6584 0 8 1984 426 298 33 147 chr1 183420683 183420822 -13774610 - MT2A LTR ERVL -188 413 297 8 1984 462 96 20 78 chr1 183420884 183420986 -13774446 - Lx2 LINE L1 -2 6995 6900 8 1984 926 318 105 16 chr1 183421087 183421573 -13773859 + MER74A LTR ERVL 2 530 -28 8 1984 584 338 14 31 chr1 183422046 183422339 -13773093 - B4A SINE B4 0 292 5 8 1984 336 174 101 34 chr1 183422543 183422632 -13772800 + L1M5 LINE L1 3910 4004 -2142 8 1984 3018 18 3 0 chr1 183423040 183423376 -13772056 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 1984 22173 36 40 14 chr1 183423376 183426052 -13769380 + IAPEz-int LTR ERVK 8 2751 -3730 8 1984 29608 13 2 0 chr1 183426044 183429276 -13766156 + IAPEz-int LTR ERVK 3244 6481 0 8 1984 3018 18 3 0 chr1 183429276 183429612 -13765820 + IAPLTR1a_Mm LTR ERVK 1 337 0 8 1984 342 0 0 0 chr1 183429694 183429732 -13765700 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1984 735 142 0 0 chr1 183429733 183429895 -13765537 + (GA)n Simple_repeat Simple_repeat 1 162 0 8 1984 369 233 23 11 chr1 183429895 183429982 -13765450 - PB1D10 SINE Alu 0 117 30 8 1984 25 83 0 0 chr1 183430293 183430353 -13765079 + AT_rich Low_complexity Low_complexity 1 60 0 8 1984 286 308 170 15 chr1 183430694 183430829 -13764603 + MIRb SINE MIR 113 268 0 8 1984 803 122 0 8 chr1 183431010 183431142 -13764290 + (GAA)n Simple_repeat Simple_repeat 1 131 0 8 1984 2990 155 16 14 chr1 183431152 183431656 -13763776 + RLTR16 LTR ERVK 1 505 0 8 1984 271 341 90 73 chr1 183432068 183432356 -13763076 - ORR1E LTR MaLR -60 299 7 8 1984 464 320 157 19 chr1 183432579 183432805 -13762627 + L1M5 LINE L1 5525 5781 -343 8 1984 450 0 0 0 chr1 183432805 183432855 -13762577 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1984 464 320 157 19 chr1 183432855 183432889 -13762543 + L1M5 LINE L1 5782 5820 -304 8 1984 990 130 44 25 chr1 183432938 183433096 -13762336 + B2_Mm2 SINE B2 2 162 -33 8 1984 194 0 39 0 chr1 183433096 183433122 -13762310 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1984 4573 165 75 34 chr1 183433360 183434233 -13761199 - RMER13B LTR ERVK 0 908 1 8 1984 1252 221 72 63 chr1 183434457 183434820 -13760612 - ORR1D2 LTR MaLR 0 370 5 8 1984 531 0 0 0 chr1 183434831 183434890 -13760542 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1984 295 232 143 24 chr1 183434903 183434987 -13760445 - PB1D10 SINE Alu -23 94 1 9 1984 230 258 0 46 chr1 183434931 183434996 -13760436 - MT2B2 LTR ERVL -366 218 157 9 1984 248 316 132 28 chr1 183435647 183435859 -13759573 + LTR40a LTR ERVL 231 464 -55 9 1984 21 36 0 0 chr1 183436761 183436789 -13758643 + AT_rich Low_complexity Low_complexity 1 28 0 9 1984 276 243 26 26 chr1 183437734 183437810 -13757622 + MTEb LTR MaLR 289 364 -15 9 1984 420 20 0 0 chr1 183438701 183438750 -13756682 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1984 743 284 71 18 chr1 183439441 183439667 -13755765 + Tigger7 DNA MER2_type 10 247 -2244 9 1984 245 346 13 0 chr1 183439658 183439736 -13755696 + Tigger7 DNA MER2_type 2132 2210 -281 9 1984 898 272 33 70 chr1 183443572 183443872 -13751560 + B4A SINE B4 4 292 0 9 1984 448 234 0 14 chr1 183443872 183444015 -13751417 + (CA)n Simple_repeat Simple_repeat 1 141 0 9 1984 216 0 0 0 chr1 183444086 183444110 -13751322 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 9 1984 585 270 8 16 chr1 183444283 183444411 -13751021 + RSINE1 SINE B4 39 165 0 9 1984 308 315 77 36 chr1 183444996 183445164 -13750268 - MIRb SINE MIR -93 175 1 9 1984 3660 124 74 19 chr1 183445862 183446429 -13749003 - RLTR1D LTR ERV1 -4 601 4 9 1984 393 239 82 34 chr1 183446639 183446786 -13748646 + MER53 DNA hAT 1 154 -39 9 1984 324 0 0 0 chr1 183446857 183446893 -13748539 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1984 432 0 0 0 chr1 183446893 183446940 -13748492 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1984 514 385 90 52 chr1 183447039 183447596 -13747836 - HAL1 LINE L1 -5 2502 1925 9 1984 232 307 0 0 chr1 183447786 183447861 -13747571 + G-rich Low_complexity Low_complexity 1 75 0 9 1984 249 234 0 72 chr1 183448340 183448409 -13747023 - Charlie6 DNA MER1_type -3174 326 263 9 1984 270 0 0 0 chr1 183448981 183449011 -13746421 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 9 1984 214 268 12 12 chr1 183449034 183449117 -13746315 + CT-rich Low_complexity Low_complexity 2 84 0 9 1984 968 210 5 32 chr1 183449408 183449595 -13745837 - B3A SINE B2 -15 183 2 9 1984 180 270 132 73 chr1 183450359 183450495 -13744937 - MIRc SINE MIR -2 266 123 9 1984 194 244 55 102 chr1 183451561 183451689 -13743743 - L2 LINE L2 -1872 1547 1426 9 1984 720 89 203 0 chr1 183453282 183453405 -13742027 - URR1A DNA MER1_type 0 226 79 9 1984 285 98 0 0 chr1 183453609 183453650 -13741782 + (ATG)n Simple_repeat Simple_repeat 2 42 0 9 1984 180 0 0 0 chr1 183453961 183453981 -13741451 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1984 3909 22 2 0 chr1 183454339 183454786 -13740646 + L1Md_F3 LINE L1 6137 6584 0 9 1984 332 162 27 81 chr1 183455185 183455259 -13740173 + ORSL DNA Tip100 36 105 -170 9 1984 219 256 264 11 chr1 183455260 183455347 -13740085 + PB1D10 SINE Alu 2 110 -7 9 1984 642 176 20 0 chr1 183455596 183455744 -13739688 + CT-rich Low_complexity Low_complexity 2 152 0 9 1984 215 268 10 0 chr1 183455757 183455854 -13739578 + CT-rich Low_complexity Low_complexity 2 99 0 9 1984 308 267 0 13 chr1 183455865 183455941 -13739491 + CT-rich Low_complexity Low_complexity 2 76 0 9 1984 1235 269 72 32 chr1 183456564 183457036 -13738396 + RMER5 LTR ERV1 33 523 -11 9 1984 219 186 0 0 chr1 183457606 183457649 -13737783 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1984 210 128 0 0 chr1 183457753 183457792 -13737640 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1984 480 218 0 0 chr1 183457855 183458029 -13737403 + (TG)n Simple_repeat Simple_repeat 2 175 0 9 1984 490 286 78 42 chr1 183458059 183458252 -13737180 - B3 SINE B2 -16 200 1 9 1984 225 325 132 31 chr1 183458433 183458592 -13736840 - B4A SINE B4 -116 176 2 9 1984 560 172 92 19 chr1 183458476 183458610 -13736822 - B3A SINE B2 -70 128 2 9 1984 259 351 45 22 chr1 183459493 183459627 -13735805 - LTR16C LTR ERVL -93 396 260 9 1984 396 0 0 0 chr1 183460347 183460391 -13735041 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 1984 736 196 0 29 chr1 183460700 183460837 -13734595 + B1_Mur2 SINE Alu 1 133 -16 9 1984 207 162 0 0 chr1 183460839 183460876 -13734556 + GA-rich Low_complexity Low_complexity 1 37 0 9 1984 234 274 138 28 chr1 183460977 183461119 -13734313 - L2b LINE L2 -165 3222 3065 9 1984 1226 243 52 102 chr1 183461728 183462227 -13733205 - RLTR12B LTR ERVK -6 522 49 9 1984 1422 40 0 0 chr1 183462710 183462887 -13732545 + (CA)n Simple_repeat Simple_repeat 2 178 0 9 1984 239 346 36 63 chr1 183462946 183463057 -13732375 + MLT1G1 LTR MaLR 89 196 -383 9 1984 681 179 0 0 chr1 183463223 183463385 -13732047 + GA-rich Low_complexity Low_complexity 1 162 0 9 1984 222 232 39 33 chr1 183463781 183463863 -13731569 + MIR SINE MIR 87 178 -90 9 1984 2090 110 53 37 chr1 183465992 183466313 -13729119 - ORR1A3 LTR MaLR 0 326 1 9 1984 922 258 34 57 chr1 183466486 183466782 -13728650 - B4A SINE B4 -1 291 3 9 1984 538 214 19 0 chr1 183466815 183466918 -13728514 - ID_B1 SINE B4 -21 203 99 9 1984 613 194 11 17 chr1 183466981 183467159 -13728273 + (TATG)n Simple_repeat Simple_repeat 4 180 0 9 1984 1832 176 73 18 chr1 183468984 183469366 -13726066 - MTC LTR MaLR -18 403 1 9 1984 225 352 68 43 chr1 183469375 183469538 -13725894 + ORR1E LTR MaLR 89 255 -104 9 1984 490 316 114 3 chr1 183470934 183471223 -13724209 + L1MA8 LINE L1 5602 5922 -369 9 1984 256 327 44 26 chr1 183471298 183471524 -13723908 + L1MA8 LINE L1 6021 6250 -41 9 1984 648 195 0 0 chr1 183471587 183471756 -13723676 + CT-rich Low_complexity Low_complexity 2 170 0 9 1984 238 350 36 64 chr1 183471948 183472058 -13723374 - MLT1G1 LTR MaLR -384 195 89 9 1984 492 175 0 0 chr1 183472095 183472192 -13723240 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1984 189 0 0 0 chr1 183472630 183472651 -13722781 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 9 1984 365 16 65 0 chr1 183473067 183473129 -13722303 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1984 423 318 66 5 chr1 183475218 183475414 -13720018 - L1MA8 LINE L1 -1 6290 6083 9 1984 269 259 124 88 chr1 183476725 183476978 -13718454 - RLTR20B1 LTR ERVK -202 326 60 9 1984 2397 102 6 0 chr1 183477137 183477461 -13717971 + ORR1A2 LTR MaLR 1 326 -1 9 1984 243 238 24 71 chr1 183477605 183477700 -13717732 + MTE2a LTR MaLR 276 365 -14 9 1984 2174 50 74 3 chr1 183478344 183478642 -13716790 - ORR1A2 LTR MaLR -8 319 1 9 1984 369 178 69 118 chr1 183478642 183478743 -13716689 - PB1D9 SINE Alu -14 106 11 9 1984 238 286 49 49 chr1 183478685 183478766 -13716666 - B4A SINE B4 -136 156 76 9 1984 1142 220 32 192 chr1 183478831 183479199 -13716233 + MTE2a LTR MaLR 4 312 -67 9 1984 1356 85 16 5 chr1 183479199 183479389 -13716043 + B2_Mm2 SINE B2 2 193 -2 9 1984 1142 220 32 192 chr1 183479389 183479458 -13715974 + MTE2a LTR MaLR 313 371 -8 9 1984 677 156 16 0 chr1 183480528 183480656 -13714776 + GA-rich Low_complexity Low_complexity 3 132 0 9 1984 404 325 0 24 chr1 183480853 183480976 -13714456 - MLT1A1 LTR MaLR 0 408 289 9 1984 233 225 39 128 chr1 183480945 183481047 -13714385 - LTR16D2 LTR ERVL -417 155 63 9 1984 325 259 117 53 chr1 183481127 183481298 -13714134 + ORR1E LTR MaLR 19 200 -159 9 1984 927 142 0 0 chr1 183481966 183482128 -13713304 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 9 1984 366 261 16 50 chr1 183483681 183483802 -13711630 + PB1D10 SINE Alu 1 117 0 9 1984 220 214 53 18 chr1 183483827 183483884 -13711548 + CT-rich Low_complexity Low_complexity 1 59 0 9 1984 2201 173 92 55 chr1 183484391 183484899 -13710533 - RLTR11A LTR ERVK 0 528 2 9 1984 224 242 46 46 chr1 183485358 183485423 -13710009 - ID2 SINE ID -15 68 4 9 1984 2494 198 121 72 chr1 183485851 183486612 -13708820 - Lx7 LINE L1 0 7696 6899 9 1984 529 213 9 0 chr1 183486605 183486713 -13708719 - Lx7 LINE L1 -1910 5786 5678 9 1984 183 205 0 0 chr1 183486803 183486842 -13708590 + GA-rich Low_complexity Low_complexity 4 42 0 9 1984 478 253 46 40 chr1 183486882 183487055 -13708377 - Lx7 LINE L1 -196 5684 5502 9 1984 404 254 74 33 chr1 183487281 183487403 -13708029 + PB1 SINE Alu 1 127 0 9 1984 5324 55 14 0 chr1 183488047 183488703 -13706729 - L1Md_F3 LINE L1 -15 6569 5905 9 1984 271 217 56 19 chr1 183488973 183489081 -13706351 - MER31-int LTR ERV1 -1143 3793 3682 9 1984 711 0 0 0 chr1 183489405 183489484 -13705948 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1984 903 67 0 8 chr1 183489484 183489595 -13705837 - B1_Mus1 SINE Alu -8 140 30 9 1984 297 162 101 14 chr1 183489534 183489603 -13705829 - 4.5SRNA scRNA scRNA -8 86 12 9 1984 461 121 0 0 chr1 183489852 183489918 -13705514 + MT2A LTR ERVL 1 66 -467 9 1984 845 184 59 6 chr1 183489912 183490082 -13705350 + MT2A LTR ERVL 251 429 -104 9 1984 345 185 161 0 chr1 183490593 183490674 -13704758 - PB1D10 SINE Alu -6 111 18 9 1984 248 247 92 23 chr1 183490597 183490684 -13704748 - MT2B2 LTR ERVL -321 263 171 9 1984 29 0 0 0 chr1 183490929 183490958 -13704474 + AT_rich Low_complexity Low_complexity 1 29 0 9 1984 276 319 14 0 chr1 183491539 183491611 -13703821 + MER5B DNA MER1_type 8 80 -98 9 1984 555 296 0 68 chr1 183491642 183491805 -13703627 - MER31A LTR ERV1 0 485 334 9 1984 486 0 0 0 chr1 183492126 183492180 -13703252 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 1984 205 214 0 23 chr1 183492180 183492218 -13703214 + polypurine Low_complexity Low_complexity 1 38 0 9 1984 372 43 0 0 chr1 183492484 183492530 -13702902 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 9 1984 341 199 45 102 chr1 183492530 183492679 -13702753 - Lx4B LINE L1 -15 7043 6904 9 1984 231 61 0 0 chr1 183492971 183493004 -13702428 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1984 229 191 169 31 chr1 183493081 183493146 -13702286 + MLT1-int LTR MaLR 579 652 -719 9 1984 552 145 23 0 chr1 183493495 183493626 -13701806 + GA-rich Low_complexity Low_complexity 2 135 0 9 1984 310 291 43 32 chr1 183493711 183493899 -13701533 - L1MA4 LINE L1 -289 6011 5822 9 1984 1117 111 0 16 chr1 183493900 183494267 -13701165 + (TC)n Simple_repeat Simple_repeat 1 360 0 1 1984 398 104 15 0 chr1 183494277 183494309 -13701123 + (TCTCCC)n Simple_repeat Simple_repeat 6 37 0 1 1984 1186 90 11 0 chr1 183494309 183494487 -13700945 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1984 398 104 15 0 chr1 183494487 183494521 -13700911 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 1 1984 231 35 0 0 chr1 183494709 183494738 -13700694 - RLTR22_Mur LTR ERVK -1800 48 20 1 1984 225 148 16 47 chr1 183494770 183494834 -13700598 + CT-rich Low_complexity Low_complexity 3 64 0 1 1984 2023 110 93 3 chr1 183494834 183495134 -13700298 + ORR1A2 LTR MaLR 1 327 0 1 1984 1373 184 0 0 chr1 183495239 183495451 -13699981 - B3 SINE B2 -3 213 2 1 1984 333 309 97 8 chr1 183495559 183495683 -13699749 - B1_Mus1 SINE Alu 0 148 14 1 1984 2145 66 10 20 chr1 183496145 183496439 -13698993 - ORR1A2 LTR MaLR 0 327 37 1 1984 472 287 48 65 chr1 183496464 183496632 -13698800 + B4 SINE B4 128 292 0 1 1984 233 329 147 42 chr1 183497026 183497169 -13698263 - MLT1D LTR MaLR -69 436 279 1 1984 448 284 17 17 chr1 183497433 183497551 -13697881 - ID_B1 SINE B4 -41 183 66 1 1984 21 89 0 0 chr1 183497556 183497612 -13697820 + AT_rich Low_complexity Low_complexity 1 56 0 1 1984 737 259 98 0 chr1 183498049 183498304 -13697128 - Lx9 LINE L1 -766 6878 6599 1 1984 1122 235 16 12 chr1 183498602 183498860 -13696572 - Lx9 LINE L1 -1018 6626 6368 1 1984 715 232 69 16 chr1 183498986 183499174 -13696258 - Lx9 LINE L1 -1687 5957 5760 1 1984 2759 25 0 0 chr1 183499280 183499603 -13695829 + IAPEY2_LTR LTR ERVK 32 354 -3 1 1984 35 71 0 0 chr1 183500000 183500070 -13695362 + AT_rich Low_complexity Low_complexity 1 70 0 1 1984 240 284 158 45 chr1 183500440 183500573 -13694859 + MLT1C LTR MaLR 159 306 -161 2 1985 285 98 0 0 chr1 183501520 183501561 -13693871 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 3 1985 324 0 0 0 chr1 183501818 183501854 -13693578 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1985 362 248 136 50 chr1 183501862 183502002 -13693430 + B3A SINE B2 60 211 -5 5 1985 310 298 123 46 chr1 183502008 183502138 -13693294 + PB1D10 SINE Alu 3 142 -7 6 1985 308 258 16 62 chr1 183502575 183502703 -13692729 + MLT1A0 LTR MaLR 30 151 -214 7 1985 339 289 56 15 chr1 183502918 183503102 -13692330 + MLT1A0 LTR MaLR 178 373 -1 7 1985 429 70 0 0 chr1 183503123 183503180 -13692252 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1985 186 133 0 0 chr1 183503495 183503525 -13691907 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 1985 1009 151 0 0 chr1 183503537 183503683 -13691749 - B1_Mur4 SINE Alu -4 146 1 1 1985 742 199 118 5 chr1 183503685 183503872 -13691560 - B3 SINE B2 0 216 9 1 1985 843 296 140 33 chr1 183503950 183504655 -13690777 - Charlie2b DNA MER1_type -184 2598 1818 1 1985 890 309 114 22 chr1 183504722 183505213 -13690219 + MER82 DNA MER2_type 3 538 -115 1 1985 733 163 77 13 chr1 183505234 183505389 -13690043 - MTD LTR MaLR -237 182 18 1 1985 261 231 140 28 chr1 183506353 183506460 -13688972 - PB1D7 SINE Alu 0 120 2 1 1985 510 301 99 42 chr1 183507115 183507469 -13687963 - MTD LTR MaLR 0 419 46 1 1985 288 232 53 94 chr1 183507593 183507764 -13687668 - MER2 DNA MER2_type -100 245 82 1 1985 227 128 64 0 chr1 183508163 183508210 -13687222 + C-rich Low_complexity Low_complexity 3 52 0 1 1985 356 304 0 0 chr1 183508231 183508323 -13687109 - PB1D10 SINE Alu -21 96 5 1 1985 1032 269 14 34 chr1 183508379 183508671 -13686761 - B4 SINE B4 -6 286 1 2 1985 446 212 17 50 chr1 183508847 183508966 -13686466 - PB1 SINE Alu -2 125 11 2 1985 300 254 30 0 chr1 183509161 183509228 -13686204 - ID4_ SINE ID -13 70 2 2 1985 458 109 7 61 chr1 183509249 183509396 -13686036 + T-rich Low_complexity Low_complexity 1 139 0 2 1985 989 99 35 0 chr1 183509396 183509538 -13685894 - B1_Mus1 SINE Alu 0 148 2 2 1985 235 254 0 16 chr1 183509543 183509607 -13685825 - L1M4c LINE L1 -4731 1653 1591 2 1985 274 239 43 43 chr1 183510359 183510429 -13685003 - ID4_ SINE ID -13 70 1 2 1985 333 0 0 0 chr1 183510789 183510826 -13684606 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1985 259 265 154 29 chr1 183510832 183511007 -13684425 - HAL1b LINE L1 -744 1265 1069 2 1985 503 219 8 50 chr1 183511387 183511507 -13683925 + PB1D9 SINE Alu 1 115 -5 2 1985 312 317 70 0 chr1 183511521 183511663 -13683769 + Cheshire DNA MER1_type 2269 2420 0 3 1985 671 299 79 5 chr1 183512239 183512441 -13682991 + ID_B1 SINE B4 6 222 -2 3 1985 395 161 0 0 chr1 183512929 183512991 -13682441 + B1_Mur3 SINE Alu 1 62 -87 3 1985 1724 190 98 57 chr1 183513424 183513894 -13681538 + RLTR20A LTR ERVK 1 489 -52 3 1985 369 0 0 0 chr1 183513899 183513940 -13681492 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1985 771 59 0 0 chr1 183515512 183515613 -13679819 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 1985 405 0 0 0 chr1 183515614 183515659 -13679773 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1985 212 54 54 0 chr1 183516214 183516251 -13679181 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1985 780 279 57 30 chr1 183516341 183516604 -13678828 - B4 SINE B4 -21 271 2 3 1985 592 293 17 6 chr1 183517036 183517211 -13678221 - B3A SINE B2 -17 181 5 3 1985 695 230 7 0 chr1 183517236 183517375 -13678057 - B1_Mur1 SINE Alu -8 141 2 4 1985 197 348 102 35 chr1 183517511 183517824 -13677608 - L2 LINE L2 -806 2613 2280 4 1985 580 295 0 0 chr1 183517962 183518101 -13677331 + B1F2 SINE Alu 1 139 -10 4 1985 405 0 0 0 chr1 183519307 183519352 -13676080 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1985 375 121 0 0 chr1 183521088 183521146 -13674286 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1985 563 220 11 11 chr1 183521198 183521373 -13674059 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1985 293 200 18 0 chr1 183521373 183521428 -13674004 - ID4 SINE ID -27 56 1 4 1985 319 279 102 37 chr1 183521428 183521456 -13673976 - PB1D10 SINE Alu -38 111 3 4 1985 320 216 27 0 chr1 183521456 183521530 -13673902 - MT2B2 LTR ERVL -342 242 167 4 1985 21 36 0 0 chr1 183521616 183521644 -13673788 + AT_rich Low_complexity Low_complexity 1 28 0 4 1985 296 298 102 15 chr1 183522153 183522521 -13672911 + L1M2 LINE L1 5183 5586 -714 4 1985 1014 23 8 0 chr1 183522740 183522870 -13672562 + B1_Mus2 SINE Alu 17 147 0 5 1985 386 20 20 0 chr1 183523272 183523323 -13672109 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1985 601 251 113 25 chr1 183524161 183524365 -13671067 - MER58A DNA MER1_type -2 222 1 5 1985 196 288 78 31 chr1 183524468 183524597 -13670835 + MIRb SINE MIR 73 207 -61 5 1985 25 65 0 0 chr1 183525089 183525135 -13670297 + AT_rich Low_complexity Low_complexity 1 46 0 5 1985 301 211 79 59 chr1 183525843 183525944 -13669488 + PB1D7 SINE Alu 2 104 -16 5 1985 232 188 14 170 chr1 183526008 183526149 -13669283 - Lx9 LINE L1 0 7644 7526 5 1985 3473 237 84 24 chr1 183526160 183527114 -13668318 - Lx9 LINE L1 -290 7354 6344 5 1985 354 23 0 0 chr1 183527117 183527160 -13668272 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1985 243 207 7 123 chr1 183527261 183527399 -13668033 + ORR1B1-int LTR MaLR 632 753 -756 5 1985 954 51 0 29 chr1 183527277 183527432 -13668000 + B1_Mus1 SINE Alu 2 140 -8 5 1985 188 34 0 33 chr1 183527432 183527462 -13667970 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1985 979 205 111 44 chr1 183527712 183527983 -13667449 - B4 SINE B4 -2 290 2 6 1985 219 222 73 9 chr1 183528635 183528744 -13666688 + (TA)n Simple_repeat Simple_repeat 1 116 0 6 1985 315 0 0 0 chr1 183529255 183529290 -13666142 + (TCTCCC)n Simple_repeat Simple_repeat 2 36 0 6 1985 2106 106 41 107 chr1 183529290 183529681 -13665751 + RLTR8 LTR ERVK 1 365 0 6 1985 211 255 0 0 chr1 183529719 183529766 -13665666 - ID4_ SINE ID -29 54 8 6 1985 221 171 0 0 chr1 183529885 183529926 -13665506 + T-rich Low_complexity Low_complexity 1 41 0 6 1985 413 208 0 7 chr1 183529999 183530097 -13665335 - L1MD1 LINE L1 -10 6232 6151 6 1985 652 234 52 85 chr1 183530369 183530617 -13664815 - L1MD1 LINE L1 -670 5572 5333 6 1985 223 236 30 18 chr1 183530940 183530997 -13664435 + B2_Mm1t SINE B2 52 119 -76 6 1985 225 0 0 0 chr1 183531405 183531430 -13664002 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1985 423 0 0 0 chr1 183531430 183531476 -13663956 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1985 209 108 27 0 chr1 183532201 183532238 -13663194 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1985 623 122 19 0 chr1 183532243 183532350 -13663082 - B1_Mur3 SINE Alu 0 149 41 7 1985 341 290 78 28 chr1 183532420 183532562 -13662870 - B1F SINE Alu 0 149 1 7 1985 670 188 8 8 chr1 183532712 183532830 -13662602 + PB1D9 SINE Alu 2 119 -1 7 1985 227 87 43 0 chr1 183532830 183532876 -13662556 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 7 1985 288 270 0 39 chr1 183532879 183532956 -13662476 + polypurine Low_complexity Low_complexity 5 78 0 7 1985 3138 68 2 2 chr1 183533210 183533610 -13661822 - MTB LTR MaLR 0 400 1 7 1985 653 301 58 4 chr1 183533880 183534071 -13661361 - B4A SINE B4 -9 283 82 7 1985 378 0 0 0 chr1 183534071 183534113 -13661319 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1985 653 301 58 4 chr1 183534113 183534161 -13661271 - B4A SINE B4 -211 81 32 7 1985 1161 88 0 0 chr1 183534320 183534479 -13660953 + L1_Mus2 LINE L1 6408 6566 0 8 1985 619 225 0 21 chr1 183534587 183534732 -13660700 + B1_Mur1 SINE Alu 8 149 0 8 1985 342 0 0 0 chr1 183535238 183535276 -13660156 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1985 199 215 165 0 chr1 183535354 183535433 -13659999 - L4 LINE RTE -218 1811 1720 8 1985 377 221 123 0 chr1 183536295 183536417 -13659015 - MER53 DNA hAT -12 181 45 8 1985 216 250 21 0 chr1 183536855 183536903 -13658529 + CT-rich Low_complexity Low_complexity 1 49 0 8 1985 491 272 73 84 chr1 183537387 183537675 -13657757 - L1M4 LINE L1 -758 5425 5152 8 1985 296 250 99 41 chr1 183537675 183537796 -13657636 + B1F1 SINE Alu 5 132 -17 8 1985 788 64 18 0 chr1 183537805 183537915 -13657517 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 8 1985 491 289 119 88 chr1 183537915 183538271 -13657161 - L1M4 LINE L1 -1002 5144 4759 8 1985 298 277 116 0 chr1 183538274 183538386 -13657046 - L1M4 LINE L1 -1347 4793 4669 8 1985 493 269 50 33 chr1 183538397 183538639 -13656793 - RLTR15 LTR ERVK -15 344 99 8 1985 435 165 30 15 chr1 183538639 183538774 -13656658 + CT-rich Low_complexity Low_complexity 2 138 0 9 1985 292 232 19 78 chr1 183538778 183538881 -13656551 - RLTR15 LTR ERVK -248 111 15 8 1985 5162 236 74 36 chr1 183538962 183541190 -13654242 - Lx9 LINE L1 0 7644 5192 9 1985 183 42 0 0 chr1 183541198 183541222 -13654210 + (CAA)n Simple_repeat Simple_repeat 2 25 0 9 1985 1418 238 26 83 chr1 183541784 183541898 -13653534 - Lx9 LINE L1 -2383 3464 3357 9 1985 198 0 0 0 chr1 183541898 183541920 -13653512 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 9 1985 1418 238 26 83 chr1 183541920 183542333 -13653099 - Lx9 LINE L1 -2491 3356 2967 9 1985 304 280 108 17 chr1 183542482 183542602 -13652830 - B1F SINE Alu -9 140 10 9 1985 330 26 0 0 chr1 183542693 183542732 -13652700 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 1985 243 250 24 48 chr1 183542736 183542820 -13652612 - Lx9 LINE L1 -2835 3012 2931 9 1985 433 152 54 19 chr1 183542831 183543251 -13652181 + (TG)n Simple_repeat Simple_repeat 1 434 0 9 1985 890 280 206 27 chr1 183544063 183544240 -13651192 - L1MB3 LINE L1 -65 6118 5893 9 1985 345 24 0 0 chr1 183544240 183544282 -13651150 + (TC)n Simple_repeat Simple_repeat 2 43 0 9 1985 890 280 206 27 chr1 183544282 183544705 -13650727 - L1MB3 LINE L1 -291 5892 5399 9 1985 204 40 0 0 chr1 183544705 183544730 -13650702 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 9 1985 1242 87 41 0 chr1 183544730 183544902 -13650530 - B2_Mm2 SINE B2 -15 180 2 1 1985 890 280 206 27 chr1 183544902 183544970 -13650462 - L1MB3 LINE L1 -785 5398 5329 9 1985 729 270 33 63 chr1 183545006 183545306 -13650126 - B4 SINE B4 0 292 2 1 1985 382 167 0 23 chr1 183545338 183545424 -13650008 + CT-rich Low_complexity Low_complexity 3 86 0 1 1985 24 77 0 0 chr1 183545440 183545492 -13649940 + AT_rich Low_complexity Low_complexity 1 52 0 1 1985 183 250 0 0 chr1 183545718 183545770 -13649662 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1985 405 206 0 0 chr1 183547208 183547300 -13648132 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1985 2113 198 39 49 chr1 183547312 183547806 -13647626 - MT2A LTR ERVL -44 489 1 1 1985 219 139 0 0 chr1 183548259 183548295 -13647137 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1985 12298 51 16 67 chr1 183548680 183550581 -13644851 - RLTR22_Mus LTR ERVK -4 1804 1 1 1985 180 0 0 0 chr1 183550802 183550822 -13644610 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1985 243 257 145 34 chr1 183550833 183550950 -13644482 - L1MC4a LINE L1 -653 7229 7100 1 1985 445 244 55 14 chr1 183553200 183553354 -13642078 - RLTR20B3 LTR ERVK -13 564 378 1 1985 735 262 85 62 chr1 183553756 183554110 -13641322 - RLTR11A LTR ERVK -148 380 19 1 1985 289 323 147 45 chr1 183554325 183554523 -13640909 - B4 SINE B4 -71 221 4 1 1985 261 0 0 0 chr1 183554611 183554640 -13640792 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1985 1000 273 135 36 chr1 183555771 183556348 -13639084 - Lx8 LINE L1 0 7473 6840 1 1985 191 289 48 84 chr1 183556363 183556446 -13638986 + MIRb SINE MIR 86 165 -103 1 1985 202 196 36 0 chr1 183557121 183557177 -13638255 + T-rich Low_complexity Low_complexity 3 60 0 1 1985 1268 240 65 81 chr1 183557260 183557632 -13637800 + ORR1D2 LTR MaLR 1 366 -4 1 1985 297 336 8 17 chr1 183557635 183557753 -13637679 + Charlie4a DNA MER1_type 13 129 -379 1 1985 891 231 85 5 chr1 183559096 183559296 -13636136 + ID_B1 SINE B4 2 217 -7 1 1985 4125 46 2 4 chr1 183561025 183561506 -13633926 - L1Md_F2 LINE L1 -2 6580 6101 1 1985 278 271 80 40 chr1 183563473 183563573 -13631859 + B1_Mur3 SINE Alu 21 124 -25 1 1985 260 273 0 0 chr1 183563638 183563704 -13631728 + B1F1 SINE Alu 77 142 -7 1 1985 918 296 8 8 chr1 183564672 183564907 -13630525 + ORR1E LTR MaLR 2 236 -123 1 1985 231 229 0 0 chr1 183564928 183564989 -13630443 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1985 348 243 0 0 chr1 183564991 183565065 -13630367 + ORR1E LTR MaLR 293 366 -13 1 1985 22 35 0 0 chr1 183565183 183565212 -13630220 + AT_rich Low_complexity Low_complexity 1 29 0 1 1985 216 0 0 0 chr1 183565441 183565465 -13629967 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1985 1294 41 0 13 chr1 183565465 183565614 -13629818 - B1_Mus2 SINE Alu 0 147 1 1 1985 25 31 0 0 chr1 183567636 183567668 -13627764 + AT_rich Low_complexity Low_complexity 1 32 0 1 1985 189 0 0 0 chr1 183568170 183568191 -13627241 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1985 487 340 81 15 chr1 183568464 183568724 -13626708 + MER44B DNA MER2_type 11 287 -263 1 1985 316 212 32 56 chr1 183569453 183569578 -13625854 + (GTGTG)n Simple_repeat Simple_repeat 4 125 0 1 1985 184 200 35 43 chr1 183569646 183569787 -13625645 + (GTGTG)n Simple_repeat Simple_repeat 1 140 0 1 1985 331 249 36 42 chr1 183569787 183569955 -13625477 + (GTATG)n Simple_repeat Simple_repeat 1 167 0 1 1985 390 229 27 69 chr1 183569923 183570055 -13625377 + (GTGTG)n Simple_repeat Simple_repeat 3 130 0 1 1985 5013 55 7 17 chr1 183570055 183570648 -13624784 + LTRIS_Mus LTR ERV1 1 587 0 1 1985 390 229 27 69 chr1 183570648 183570703 -13624729 + (GTGTG)n Simple_repeat Simple_repeat 1 52 0 1 1985 359 250 36 36 chr1 183570751 183570968 -13624464 + (GTGTG)n Simple_repeat Simple_repeat 1 217 0 1 1985 291 295 40 23 chr1 183570863 183571040 -13624392 + (GTATG)n Simple_repeat Simple_repeat 1 180 0 1 1985 230 227 26 39 chr1 183570991 183571069 -13624363 + (GTGTG)n Simple_repeat Simple_repeat 3 79 0 1 1985 210 71 0 0 chr1 183572576 183572604 -13622828 + (CATG)n Simple_repeat Simple_repeat 1 28 0 1 1985 1329 41 0 0 chr1 183574083 183574230 -13621202 - B1_Mus2 SINE Alu 0 147 1 1 1985 213 39 0 0 chr1 183574258 183574284 -13621148 + (TTATA)n Simple_repeat Simple_repeat 1 26 0 1 1985 593 264 231 43 chr1 183574368 183574692 -13620740 - MLT1D LTR MaLR -116 389 5 1 1985 700 253 81 0 chr1 183574741 183574927 -13620505 + B3 SINE B2 5 205 -11 1 1985 432 258 209 93 chr1 183575268 183575589 -13619843 + ORR1E LTR MaLR 1 358 -1 1 1985 1169 127 25 154 chr1 183576675 183576771 -13618661 + Lx9 LINE L1 7362 7462 -182 1 1985 518 0 16 0 chr1 183576771 183576833 -13618599 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1985 1169 127 25 154 chr1 183576833 183577061 -13618371 + Lx9 LINE L1 7463 7644 0 1 1985 940 279 42 50 chr1 183577637 183578015 -13617417 - Lx8 LINE L1 -199 7274 6900 1 1985 242 208 14 27 chr1 183579601 183579675 -13615757 + A-rich Low_complexity Low_complexity 2 74 0 1 1985 2521 114 8 3 chr1 183579771 183580131 -13615301 - L1_Mur2 LINE L1 -1 5876 5515 1 1985 3883 218 29 12 chr1 183580127 183581019 -13614413 - L1_Mur3 LINE L1 -1525 4355 3449 1 1985 231 293 0 0 chr1 183582070 183582128 -13613304 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 1 1985 1266 41 7 0 chr1 183582984 183583130 -13612302 + B1_Mus2 SINE Alu 1 147 0 1 1985 351 0 0 0 chr1 183583980 183584019 -13611413 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1985 8175 81 33 6 chr1 183584430 183586192 -13609240 - L1_Mus3 LINE L1 -9 6629 4800 1 1985 309 211 146 66 chr1 183586539 183586676 -13608756 - B3 SINE B2 -6 210 63 1 1985 402 21 0 0 chr1 183586937 183586984 -13608448 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 1985 21381 106 99 22 chr1 183587411 183588924 -13606508 - Lx4A LINE L1 -905 6153 4635 1 1985 311 0 26 0 chr1 183588924 183588963 -13606469 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1985 21381 98 114 13 chr1 183588963 183590328 -13605104 - Lx4A LINE L1 -1243 4634 2925 1 1985 3055 46 3 0 chr1 183590328 183590673 -13604759 - ORR1A0 LTR MaLR 0 346 1 1 1985 21381 98 114 13 chr1 183590673 183591475 -13603957 - Lx4A LINE L1 -2953 2924 2140 1 1985 7932 79 15 9 chr1 183591468 183592891 -13602541 - L1_Mus3 LINE L1 0 6638 5212 1 1985 4135 134 194 16 chr1 183592890 183594221 -13601211 - Lx4A LINE L1 -3722 2155 526 1 1985 586 315 102 27 chr1 183594218 183594551 -13600881 - Lx7 LINE L1 -692 7004 6647 1 1985 472 231 37 28 chr1 183595665 183595772 -13599660 + PB1 SINE Alu 5 112 -15 1 1985 602 207 215 0 chr1 183595912 183596033 -13599399 + B1_Mur4 SINE Alu 1 147 -3 1 1985 201 39 0 0 chr1 183597209 183597235 -13598197 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1985 271 227 166 45 chr1 183597833 183597990 -13597442 - L1MA6 LINE L1 0 6300 6125 1 1985 22 0 0 0 chr1 183598247 183598269 -13597163 + AT_rich Low_complexity Low_complexity 1 22 0 1 1985 12376 80 3 3 chr1 183598459 183600872 -13594560 - L1_Mus1 LINE L1 0 6567 4152 1 1985 1329 276 181 20 chr1 183600915 183601510 -13593922 - L1M2 LINE L1 -2221 3922 3232 1 1985 545 286 83 36 chr1 183601531 183601723 -13593709 + B4 SINE B4 13 213 -79 1 1985 300 289 52 94 chr1 183601903 183601967 -13593465 - L1M2 LINE L1 -3047 3096 3041 1 1985 1461 164 0 5 chr1 183601967 183602181 -13593251 - B3 SINE B2 -3 213 1 1 1985 300 289 52 94 chr1 183602181 183602307 -13593125 - L1M2 LINE L1 -3103 3040 2914 1 1985 570 301 65 0 chr1 183602308 183602461 -13592971 + RSINE1 SINE B4 3 165 0 1 1985 509 120 11 0 chr1 183602464 183602556 -13592876 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1985 1215 282 66 25 chr1 183602580 183603172 -13592260 - L1M2 LINE L1 -3249 2894 2279 1 1985 223 338 0 0 chr1 183604340 183604417 -13591015 + ID4 SINE ID 2 78 -5 1 1985 24 0 0 0 chr1 183605506 183605530 -13589902 + AT_rich Low_complexity Low_complexity 1 24 0 1 1985 236 254 159 0 chr1 183606058 183606077 -13589355 + tRNA-Ala-GCY_ tRNA tRNA 2 20 -55 1 1985 324 102 0 0 chr1 183606077 183606126 -13589306 + (TGAG)n Simple_repeat Simple_repeat 2 50 0 1 1985 236 254 159 0 chr1 183606126 183606169 -13589263 + tRNA-Ala-GCY_ tRNA tRNA 21 73 -2 1 1985 768 120 0 0 chr1 183606887 183607037 -13588395 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 1985 23 33 0 0 chr1 183607647 183607677 -13587755 + AT_rich Low_complexity Low_complexity 1 30 0 1 1985 933 226 85 0 chr1 183607770 183607969 -13587463 + B3 SINE B2 1 216 0 1 1985 2507 80 114 6 chr1 183608497 183608849 -13586583 + RLTR10 LTR ERVK 1 390 0 1 1985 484 287 46 7 chr1 183609082 183609233 -13586199 + RSINE1 SINE B4 9 165 0 1 1985 318 87 0 0 chr1 183609235 183609281 -13586151 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1985 370 245 57 124 chr1 183609498 183609851 -13585581 - L1M4 LINE L1 -3645 2501 2136 1 1985 402 239 197 0 chr1 183610045 183610162 -13585270 + MLT1B LTR MaLR 21 160 -230 1 1985 294 260 146 0 chr1 183610164 183610260 -13585172 + MLT1B LTR MaLR 281 390 0 1 1985 260 292 28 0 chr1 183611611 183611683 -13583749 + MER2B DNA MER2_type 10 83 -253 1 1985 347 216 133 18 chr1 183611960 183612073 -13583359 - L1M2 LINE L1 -3539 2604 2479 1 1985 21 36 0 0 chr1 183612142 183612170 -13583262 + AT_rich Low_complexity Low_complexity 1 28 0 1 1985 376 82 0 0 chr1 183612200 183612249 -13583183 + L1VL2 LINE L1 178 226 -6109 1 1985 14554 74 44 40 chr1 183612249 183614563 -13580869 + L1VL2 LINE L1 9 2417 -1198 1 1985 594 120 0 0 chr1 183614563 183614655 -13580777 + B1_Mus1 SINE Alu 1 92 -56 1 1985 14554 74 44 40 chr1 183614655 183615226 -13580206 + L1VL2 LINE L1 2418 3013 -602 1 1985 22 56 0 0 chr1 183615522 183615558 -13579874 + AT_rich Low_complexity Low_complexity 1 36 0 1 1985 25 51 0 0 chr1 183615769 183615808 -13579624 + AT_rich Low_complexity Low_complexity 1 39 0 1 1985 550 286 81 70 chr1 183616842 183617223 -13578209 + MLT1A0 LTR MaLR 1 357 -17 1 1985 351 0 0 0 chr1 183617526 183617565 -13577867 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1985 675 283 71 32 chr1 183617685 183617966 -13577466 + B4A SINE B4 1 292 0 1 1985 231 267 0 16 chr1 183617973 183618034 -13577398 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1985 1665 117 48 11 chr1 183618595 183618968 -13576464 - RMER6A LTR ERVK 0 720 414 1 1985 816 225 54 77 chr1 183619069 183619420 -13576012 - RLTR15 LTR ERVK -16 343 1 1 1985 2112 106 3 12 chr1 183619499 183619832 -13575600 - RMER6D LTR ERVK -390 330 1 2 1985 229 281 0 0 chr1 183620781 183620838 -13574594 - L1M3 LINE L1 -513 5658 5602 2 1985 295 99 48 36 chr1 183620964 183621048 -13574384 + (TTATA)n Simple_repeat Simple_repeat 1 85 0 2 1985 217 210 32 0 chr1 183621068 183621130 -13574302 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1985 411 269 70 41 chr1 183621523 183621767 -13573665 + L1M4 LINE L1 5545 5795 -389 2 1985 295 143 58 4 chr1 183621879 183621948 -13573484 + BC1_Mm scRNA scRNA 5 76 -76 2 1985 249 33 0 0 chr1 183622907 183622937 -13572495 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1985 303 235 244 0 chr1 183623165 183623284 -13572148 - ID_B1 SINE B4 0 224 77 2 1985 303 322 0 0 chr1 183623447 183623534 -13571898 - Lx8 LINE L1 -218 7255 7169 2 1985 272 244 146 44 chr1 183623692 183623829 -13571603 + L1M5 LINE L1 5639 5789 -335 2 1985 180 0 0 0 chr1 183624305 183624325 -13571107 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1985 868 244 128 32 chr1 183624904 183625415 -13570017 + RLTR18B LTR ERVK 56 526 -90 2 1985 679 59 20 0 chr1 183625740 183625841 -13569591 + B1_Mus2 SINE Alu 43 145 -2 2 1985 653 298 56 52 chr1 183627200 183627469 -13567963 + B4A SINE B4 2 271 -21 2 1985 619 259 0 19 chr1 183627612 183627766 -13567666 + ID_B1 SINE B4 78 224 0 2 1985 407 137 14 0 chr1 183627776 183627849 -13567583 + GA-rich Low_complexity Low_complexity 2 75 0 2 1985 938 188 94 0 chr1 183628497 183628689 -13566743 + B3 SINE B2 1 210 -6 2 1985 420 214 134 8 chr1 183628892 183629019 -13566413 + B1F SINE Alu 5 147 -2 2 1985 255 133 0 0 chr1 183629022 183629067 -13566365 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 1985 298 270 17 59 chr1 183629416 183629534 -13565898 + Tigger5 DNA MER2_type 2291 2403 -3 2 1985 2926 42 3 6 chr1 183629666 183630023 -13565409 + L1_Mus1 LINE L1 6040 6395 -172 2 1985 444 173 44 15 chr1 183630043 183630178 -13565254 + CT-rich Low_complexity Low_complexity 2 140 0 2 1985 295 129 211 14 chr1 183630178 183630249 -13565183 + B3 SINE B2 130 214 -2 2 1985 270 81 0 0 chr1 183630304 183630341 -13565091 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1985 262 303 83 21 chr1 183630378 183630523 -13564909 - RSINE1 SINE B4 -9 156 3 2 1985 769 285 5 9 chr1 183630576 183630792 -13564640 + B3 SINE B2 2 216 0 2 1986 635 75 11 0 chr1 183631894 183631988 -13563444 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 1986 420 20 0 0 chr1 183631988 183632036 -13563396 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1986 297 0 0 0 chr1 183632826 183632859 -13562573 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2 1986 1419 56 50 0 chr1 183633252 183633432 -13562000 - B2_Mm1t SINE B2 -4 189 1 2 1986 520 232 26 9 chr1 183633723 183633836 -13561596 + PB1D10 SINE Alu 1 115 -2 2 1986 482 222 30 45 chr1 183633846 183633978 -13561454 + B3A SINE B2 3 132 -66 2 1986 674 316 93 14 chr1 183634899 183635255 -13560177 - L1MA7 LINE L1 -1 6290 5907 2 1986 28 48 0 0 chr1 183635326 183635368 -13560064 + AT_rich Low_complexity Low_complexity 1 42 0 2 1986 599 325 6 0 chr1 183635381 183635547 -13559885 - B3A SINE B2 -30 168 2 2 1986 293 240 163 31 chr1 183635582 183635711 -13559721 - L1M2 LINE L1 -1552 4591 4446 2 1986 753 252 14 23 chr1 183635719 183635897 -13559535 - L1M2 LINE L1 -2240 3903 3727 2 1986 330 26 0 0 chr1 183635897 183635936 -13559496 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1986 753 259 19 25 chr1 183635936 183636001 -13559431 - L1M2 LINE L1 -2417 3726 3657 2 1986 431 262 186 29 chr1 183635979 183636013 -13559419 - L1M2 LINE L1 -2382 3761 3728 2 1986 387 0 0 0 chr1 183636013 183636056 -13559376 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1986 431 262 186 29 chr1 183636056 183636296 -13559136 - L1M2 LINE L1 -2416 3727 3445 2 1986 252 285 146 30 chr1 183636422 183636621 -13558811 - Charlie24 DNA MER1_type -52 2398 2177 2 1986 732 281 69 16 chr1 183639999 183640317 -13555115 - L1MA7 LINE L1 0 6300 5966 2 1986 328 230 34 22 chr1 183640425 183640514 -13554918 + CT-rich Low_complexity Low_complexity 1 90 0 2 1986 514 239 48 115 chr1 183640750 183640958 -13554474 - B3A SINE B2 -4 194 1 2 1986 3563 83 23 0 chr1 183640992 183641472 -13553960 - Lx LINE L1 -4 6650 6160 2 1986 233 238 12 59 chr1 183641508 183641593 -13553839 - L1M2 LINE L1 -1184 4959 4879 2 1986 260 256 0 23 chr1 183641594 183641682 -13553750 - L1M2 LINE L1 -3030 3113 3028 2 1986 772 311 131 34 chr1 183641779 183642608 -13552824 - L1M2 LINE L1 -3102 3041 2116 2 1986 1344 249 96 38 chr1 183642609 183643089 -13552343 - L1MA7 LINE L1 -348 5943 5436 2 1986 2945 60 10 18 chr1 183643090 183643481 -13551951 - RLTR10 LTR ERVK -2 388 1 2 1986 12914 40 6 2 chr1 183643481 183645346 -13550086 - RLTR10-int LTR ERVK -1 1986 40 2 1986 2915 52 52 0 chr1 183645357 183645726 -13549706 - RLTR10 LTR ERVK -2 388 1 2 1986 396 243 89 39 chr1 183645726 183645906 -13549526 - L1M2 LINE L1 -858 5442 5254 2 1986 371 184 232 0 chr1 183645943 183646068 -13549364 - L1M2 LINE L1 -968 5175 5022 2 1986 614 205 8 8 chr1 183646614 183646732 -13548700 - B1_Mus1 SINE Alu -10 138 21 2 1986 1222 216 32 8 chr1 183646729 183646981 -13548451 + MTD LTR MaLR 106 363 -56 2 1986 2799 170 137 59 chr1 183646981 183647966 -13547466 + RMER12 LTR ERVK 1 1269 -53 2 1986 243 88 0 0 chr1 183649143 183649177 -13546255 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 2 1986 545 229 17 0 chr1 183649522 183649640 -13545792 + PB1D9 SINE Alu 1 120 0 2 1986 191 242 0 16 chr1 183649640 183649703 -13545729 + GA-rich Low_complexity Low_complexity 3 64 0 2 1986 553 148 159 30 chr1 183649812 183649944 -13545488 + B1F2 SINE Alu 1 149 0 2 1986 279 0 0 0 chr1 183650438 183650469 -13544963 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1986 261 0 0 0 chr1 183650715 183650744 -13544688 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1986 1247 34 0 0 chr1 183650744 183650890 -13544542 - B1_Mus2 SINE Alu -1 146 1 2 1986 27 0 0 0 chr1 183651160 183651187 -13544245 + AT_rich Low_complexity Low_complexity 1 27 0 2 1986 7835 103 97 11 chr1 183651187 183652398 -13543034 - Lx4A LINE L1 -3 7055 5740 2 1986 1935 108 0 0 chr1 183652398 183652675 -13542757 - Lx4A LINE L1 -412 5465 5189 2 1986 480 35 0 0 chr1 183652684 183652742 -13542690 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 2 1986 1189 50 0 0 chr1 183652744 183652885 -13542547 - B1_Mus2 SINE Alu -6 141 1 2 1986 665 240 173 0 chr1 183652962 183653059 -13542373 - B3 SINE B2 -6 210 86 2 1986 198 0 0 0 chr1 183653059 183653081 -13542351 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1986 665 240 173 0 chr1 183653081 183653162 -13542270 - B3 SINE B2 -131 85 2 2 1986 386 254 43 58 chr1 183654031 183654169 -13541263 + RSINE1 SINE B4 2 137 -28 2 1986 183 319 171 14 chr1 183654614 183654760 -13540672 - MIR SINE MIR -82 180 12 2 1986 280 229 24 0 chr1 183655206 183655289 -13540143 + Charlie4a DNA MER1_type 363 447 -61 2 1986 423 38 0 0 chr1 183655314 183655367 -13540065 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1986 875 69 0 0 chr1 183655956 183656072 -13539360 + B1_Mm SINE Alu 29 144 -3 2 1986 210 330 146 9 chr1 183657086 183657196 -13538236 + RSINE1 SINE B4 39 163 -2 2 1986 29 28 0 0 chr1 183657274 183657310 -13538122 + AT_rich Low_complexity Low_complexity 1 36 0 2 1986 363 297 87 0 chr1 183657543 183657681 -13537751 - MTEb LTR MaLR -218 161 12 2 1986 429 256 133 28 chr1 183657682 183657968 -13537464 + L1M4 LINE L1 2912 3227 -2919 2 1986 517 236 135 27 chr1 183658109 183658368 -13537064 - MTE2b LTR MaLR -75 304 18 2 1986 654 261 60 30 chr1 183658391 183658624 -13536808 + L1M4 LINE L1 3439 3678 -2468 2 1986 225 0 0 0 chr1 183658781 183658806 -13536626 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1986 796 256 141 4 chr1 183659036 183659306 -13536126 + L1MC2 LINE L1 5522 5828 -516 2 1986 9038 79 26 19 chr1 183659462 183661490 -13533942 + L1VL4 LINE L1 203 2245 -1314 2 1986 7101 104 143 3 chr1 183661473 183662614 -13532818 + Lx2 LINE L1 5692 6991 -6 2 1986 327 169 31 0 chr1 183664136 183664201 -13531231 + L1MC2 LINE L1 6083 6149 -1636 2 1986 662 262 57 28 chr1 183664203 183664415 -13531017 - ID_B1 SINE B4 -5 219 2 2 1986 27 29 0 0 chr1 183664675 183664709 -13530723 + AT_rich Low_complexity Low_complexity 1 34 0 2 1986 5479 106 19 51 chr1 183666455 183667090 -13528342 - RMER17A2 LTR ERVK -11 895 288 2 1986 4820 56 12 2 chr1 183667090 183667681 -13527751 - L1_Mus1 LINE L1 0 6567 5971 2 1986 5479 106 19 51 chr1 183667681 183667969 -13527463 - RMER17A2 LTR ERVK -619 287 1 2 1986 288 0 0 0 chr1 183668738 183668770 -13526662 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1986 387 0 0 0 chr1 183668770 183668812 -13526620 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1986 1106 192 25 20 chr1 183669561 183669763 -13525669 + B3 SINE B2 4 206 -10 2 1986 1095 89 7 0 chr1 183669771 183669917 -13525515 + B1_Mus1 SINE Alu 2 148 0 2 1986 477 232 21 21 chr1 183670028 183670173 -13525259 - Lx8 LINE L1 -1022 6451 6307 2 1986 227 264 27 27 chr1 183670686 183670760 -13524672 + MTC LTR MaLR 3 76 -345 2 1986 1492 141 53 34 chr1 183670774 183671039 -13524393 + MTC LTR MaLR 149 418 -3 2 1986 250 337 23 23 chr1 183671710 183671798 -13523634 - LTR75 LTR ERVL -85 477 390 2 1986 209 33 33 0 chr1 183671902 183671932 -13523500 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1986 415 275 52 26 chr1 183672188 183672341 -13523091 - Lx8 LINE L1 -326 7147 6991 2 1986 454 282 56 25 chr1 183672411 183672571 -13522861 - LTR75 LTR ERVL -310 252 88 2 1986 561 277 98 37 chr1 183674421 183674665 -13520767 - L1MD LINE L1 -2150 3996 3738 2 1986 220 365 0 37 chr1 183675015 183675123 -13520309 + MIR SINE MIR 5 108 -154 2 1986 1503 220 176 0 chr1 183675149 183675495 -13519937 - MTD LTR MaLR 0 419 13 2 1986 927 169 135 5 chr1 183675626 183675811 -13519621 - B3 SINE B2 -7 209 1 2 1986 258 343 57 0 chr1 183676594 183676699 -13518733 - Charlie7 DNA MER1_type -1928 684 574 2 1986 659 210 0 0 chr1 183676712 183676831 -13518601 - B1_Mur1 SINE Alu -8 141 23 2 1986 653 241 7 14 chr1 183676883 183677030 -13518402 - B1_Mur1 SINE Alu -2 147 2 2 1986 1252 167 5 25 chr1 183678115 183678318 -13517114 + B3 SINE B2 12 210 -6 2 1986 593 282 8 8 chr1 183678387 183678525 -13516907 - B4A SINE B4 -93 131 1 2 1986 190 331 83 19 chr1 183678645 183678802 -13516630 - L2a LINE L2 -341 3085 2919 2 1986 23 0 0 0 chr1 183678921 183678944 -13516488 + AT_rich Low_complexity Low_complexity 1 23 0 3 1986 213 238 141 16 chr1 183678967 183679031 -13516401 - B3 SINE B2 -46 170 99 3 1986 334 300 11 0 chr1 183679003 183679093 -13516339 - B2_Mm2 SINE B2 -104 91 1 3 1986 486 0 0 0 chr1 183679888 183679942 -13515490 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 1986 372 312 18 0 chr1 183680483 183680592 -13514840 + RSINE1 SINE B4 2 112 -53 3 1986 1195 129 12 10 chr1 183680828 183681027 -13514405 + B2_Mm1a SINE B2 5 206 -10 3 1986 206 265 89 89 chr1 183682962 183683074 -13512358 + MIRb SINE MIR 129 240 -28 3 1986 261 0 0 0 chr1 183683367 183683396 -13512036 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1986 381 200 308 0 chr1 183683901 183684021 -13511411 + B3A SINE B2 1 157 -41 3 1986 284 48 24 0 chr1 183684028 183684070 -13511362 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1986 25 0 0 0 chr1 183684114 183684139 -13511293 + AT_rich Low_complexity Low_complexity 1 25 0 3 1986 356 307 71 100 chr1 183684508 183684747 -13510685 - ORR1E LTR MaLR -127 232 1 3 1986 381 287 133 39 chr1 183684883 183685086 -13510346 - ID_B1 SINE B4 -1 223 2 3 1986 557 146 18 80 chr1 183686232 183686344 -13509088 - B1_Mur1 SINE Alu -1 148 44 3 1986 245 191 0 0 chr1 183686779 183686821 -13508611 - B1F2 SINE Alu -104 45 4 3 1986 691 195 145 67 chr1 183686918 183687187 -13508245 + B4A SINE B4 3 292 0 3 1986 261 0 0 0 chr1 183687614 183687643 -13507789 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1986 303 253 13 0 chr1 183688113 183688188 -13507244 + L1M5 LINE L1 2120 2195 -3951 3 1986 761 250 98 9 chr1 183688503 183688717 -13506715 + ORR1D2 LTR MaLR 4 236 -134 3 1986 2112 119 10 0 chr1 183688725 183689037 -13506395 - ORR1A3 LTR MaLR -11 315 1 3 1986 1052 295 15 42 chr1 183689125 183689458 -13505974 + ORR1D2-int LTR MaLR 1 324 -1046 3 1986 829 250 69 109 chr1 183689454 183689831 -13505601 + ORR1D2-int LTR MaLR 459 820 -550 3 1986 1220 42 7 0 chr1 183690075 183690219 -13505213 + B1_Mus2 SINE Alu 3 147 0 3 1986 198 0 0 0 chr1 183690595 183690617 -13504815 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1986 1146 56 0 7 chr1 183690617 183690761 -13504671 - B1_Mus2 SINE Alu 0 147 5 3 1986 708 206 8 7 chr1 183690775 183690911 -13504521 + B3 SINE B2 6 132 -84 3 1986 267 31 0 0 chr1 183690911 183690943 -13504489 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1986 383 302 6 92 chr1 183690943 183690978 -13504454 + B2_Mm1a SINE B2 133 164 -29 3 1986 930 215 39 0 chr1 183691238 183691443 -13503989 + B3 SINE B2 4 216 0 3 1986 746 203 28 7 chr1 183691513 183691657 -13503775 + B1_Mus2 SINE Alu 1 147 0 3 1986 349 281 67 34 chr1 183691691 183691906 -13503526 + L1M5 LINE L1 5225 5447 -733 3 1986 360 111 0 0 chr1 183691996 183692050 -13503382 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1986 635 0 13 0 chr1 183692050 183692125 -13503307 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1986 380 219 138 0 chr1 183692176 183692282 -13503150 + PB1D7 SINE Alu 1 120 0 3 1986 231 366 74 47 chr1 183693708 183693857 -13501575 - RLTR22_Mur LTR ERVK -391 1457 1305 3 1986 279 0 0 0 chr1 183693933 183693964 -13501468 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1986 1224 61 0 0 chr1 183694446 183694594 -13500838 + B1_Mus1 SINE Alu 1 148 0 3 1986 659 265 187 4 chr1 183694631 183694877 -13500555 + B4 SINE B4 2 292 0 3 1986 296 242 68 0 chr1 183697251 183697340 -13498092 - PB1D10 SINE Alu -3 114 16 3 1986 1062 207 24 0 chr1 183697478 183697686 -13497746 + B3 SINE B2 4 216 0 3 1986 1511 175 28 93 chr1 183697746 183698143 -13497289 + Lx7 LINE L1 7326 7696 0 3 1986 319 279 148 23 chr1 183698440 183698616 -13496816 - B3A SINE B2 0 198 1 3 1986 210 279 0 0 chr1 183698672 183698715 -13496717 + B1_Mur2 SINE Alu 55 97 -52 3 1986 215 254 18 0 chr1 183698682 183698737 -13496695 + PB1D10 SINE Alu 62 117 0 3 1986 799 128 0 14 chr1 183698737 183698880 -13496552 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 3 1986 232 155 213 49 chr1 183699073 183699134 -13496298 - ID4_ SINE ID -12 71 1 3 1986 262 246 14 28 chr1 183700396 183700467 -13494965 - PB1D10 SINE Alu -1 116 47 3 1986 1925 173 68 30 chr1 183700664 183701034 -13494398 + ORR1C2 LTR MaLR 1 384 0 3 1986 768 127 70 63 chr1 183701065 183701076 -13494356 - B1_Mus1 SINE Alu 0 148 139 3 1986 207 0 0 0 chr1 183701076 183701099 -13494333 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1986 768 127 70 63 chr1 183701099 183701230 -13494202 - B1_Mus1 SINE Alu -10 138 5 3 1986 587 328 19 66 chr1 183701319 183701531 -13493901 + B3A SINE B2 2 203 -13 3 1986 875 219 10 53 chr1 183701724 183701931 -13493501 + B3A SINE B2 1 198 0 3 1986 33 25 0 0 chr1 183701931 183701971 -13493461 + AT_rich Low_complexity Low_complexity 1 40 0 3 1986 419 292 8 0 chr1 183702030 183702160 -13493272 + L1MB2 LINE L1 4909 5039 -1101 3 1986 239 333 0 11 chr1 183702162 183702250 -13493182 + B4A SINE B4 7 93 -199 3 1986 409 299 35 50 chr1 183702275 183702416 -13493016 + B4A SINE B4 154 292 0 3 1986 703 135 42 12 chr1 183702444 183702689 -13492743 + (CA)n Simple_repeat Simple_repeat 1 252 0 3 1986 237 292 28 0 chr1 183702744 183702816 -13492616 - MTEb LTR MaLR -19 360 287 3 1986 664 322 94 7 chr1 183703077 183703515 -13491917 + L1MB2 LINE L1 5523 5998 -173 3 1986 180 0 0 0 chr1 183703625 183703645 -13491787 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 3 1986 315 308 0 0 chr1 183703646 183703724 -13491708 - ID4_ SINE ID -5 78 1 3 1986 837 193 0 0 chr1 183704181 183704321 -13491111 + B1_Mus2 SINE Alu 7 146 -1 3 1986 287 243 13 41 chr1 183704563 183704662 -13490770 + ID4 SINE ID 15 107 -45 3 1986 187 289 77 26 chr1 183704892 183704970 -13490462 - MIRm SINE MIR -5 271 190 3 1986 508 311 51 76 chr1 183705800 183706037 -13489395 + LTR79 LTR ERVL 176 406 -121 3 1986 302 169 15 0 chr1 183706037 183706102 -13489330 + GA-rich Low_complexity Low_complexity 4 69 0 3 1986 390 210 8 16 chr1 183706141 183706262 -13489170 + GA-rich Low_complexity Low_complexity 1 120 0 3 1986 786 199 29 166 chr1 183706272 183706513 -13488919 - MT2A LTR ERVL -323 210 3 3 1986 1401 184 66 66 chr1 183706826 183707021 -13488411 + ORR1C2 LTR MaLR 2 193 -191 3 1986 363 96 0 0 chr1 183707021 183707073 -13488359 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1986 1401 184 66 66 chr1 183707073 183707256 -13488176 + ORR1C2 LTR MaLR 194 380 -4 3 1986 2173 98 16 3 chr1 183707354 183707670 -13487762 - RLTR46 LTR ERVK 0 320 1 3 1986 22657 113 6 9 chr1 183707670 183711031 -13484401 - MMERVK10C-int LTR ERVK -354 7227 4239 3 1986 9989 70 60 6 chr1 183711021 183712326 -13483106 - MMERVK10C-int LTR ERVK -4074 3507 2132 3 1986 1840 132 17 7 chr1 183712324 183712614 -13482818 - IAPEY3-int LTR ERVK -7385 295 3 3 1986 2155 102 16 3 chr1 183712616 183712932 -13482500 - RLTR46 LTR ERVK 0 320 1 3 1986 375 105 0 0 chr1 183712972 183713029 -13482403 + (TTTTC)n Simple_repeat Simple_repeat 3 59 0 3 1986 405 262 37 9 chr1 183713916 183714024 -13481408 + ID_B1 SINE B4 108 218 -6 3 1986 21 0 0 0 chr1 183714828 183714849 -13480583 + AT_rich Low_complexity Low_complexity 1 21 0 3 1986 227 31 31 0 chr1 183716434 183716466 -13478966 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1986 387 0 0 0 chr1 183716834 183716877 -13478555 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1986 541 241 90 0 chr1 183716882 183717015 -13478417 - RSINE1 SINE B4 -19 146 2 3 1986 299 261 48 48 chr1 183717207 183717332 -13478100 - L1MC4 LINE L1 -341 7701 7577 3 1986 359 269 55 146 chr1 183717371 183717536 -13477896 - RMER30 DNA MER1_type -45 157 8 3 1986 378 277 53 0 chr1 183717562 183717656 -13477776 - RSINE1 SINE B4 -29 136 38 3 1986 251 218 69 0 chr1 183717795 183717882 -13477550 - L1MC4 LINE L1 -793 7249 7157 3 1986 339 257 126 19 chr1 183718115 183718218 -13477214 - ID_B1 SINE B4 -31 193 80 3 1986 26 0 0 0 chr1 183718424 183718450 -13476982 + AT_rich Low_complexity Low_complexity 1 26 0 3 1986 364 195 46 28 chr1 183718772 183718863 -13476569 - PB1 SINE Alu -20 107 6 3 1986 473 186 39 131 chr1 183719430 183719560 -13475872 + B1_Mur1 SINE Alu 1 118 -2 3 1986 540 30 0 0 chr1 183719941 183720007 -13475425 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1986 6436 157 83 33 chr1 183720275 183721534 -13473898 - RMER12 LTR ERVK 0 1322 1 3 1986 550 174 22 0 chr1 183721628 183721720 -13473712 + B1_Mur1 SINE Alu 56 149 0 3 1986 472 170 170 0 chr1 183722750 183722850 -13472582 + B3 SINE B2 12 128 -88 3 1986 908 159 0 7 chr1 183723019 183723165 -13472267 - B1_Mur4 SINE Alu 0 150 6 3 1986 403 181 0 139 chr1 183723064 183723186 -13472246 - MT2B LTR ERVL -344 257 153 3 1986 1254 48 0 0 chr1 183723263 183723410 -13472022 + B1_Mus2 SINE Alu 1 147 0 3 1986 550 243 81 0 chr1 183723455 183723591 -13471841 + B1_Mus1 SINE Alu 2 148 0 3 1986 540 349 143 18 chr1 183723964 183724250 -13471182 - MER2 DNA MER2_type -7 338 17 3 1986 260 53 26 0 chr1 183724700 183724738 -13470694 + (GGTTG)n Simple_repeat Simple_repeat 2 40 0 3 1986 658 46 0 94 chr1 183724739 183724930 -13470502 + (TTGG)n Simple_repeat Simple_repeat 4 176 0 3 1986 281 330 0 54 chr1 183724936 183724964 -13470468 - BC1_Mm scRNA scRNA -41 111 85 3 1986 821 34 0 82 chr1 183724964 183725159 -13470273 + (TTGG)n Simple_repeat Simple_repeat 2 180 0 3 1986 320 261 0 17 chr1 183725159 183725243 -13470189 - ID4_ SINE ID -68 84 5 3 1986 22 0 0 0 chr1 183725247 183725269 -13470163 + AT_rich Low_complexity Low_complexity 1 22 0 3 1986 655 225 25 0 chr1 183725304 183725424 -13470008 - B3 SINE B2 -93 123 1 3 1986 357 287 106 0 chr1 183725432 183725526 -13469906 - PB1 SINE Alu -2 125 22 3 1986 225 0 0 0 chr1 183726857 183726882 -13468550 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1986 736 165 28 28 chr1 183728300 183728443 -13466989 - B1_Mur3 SINE Alu -6 143 1 3 1986 819 228 58 58 chr1 183728874 183729149 -13466283 + B4A SINE B4 2 276 -16 3 1986 300 243 9 43 chr1 183729174 183729290 -13466142 + (CATA)n Simple_repeat Simple_repeat 4 115 0 3 1986 249 198 17 33 chr1 183729301 183729421 -13466011 + (CA)n Simple_repeat Simple_repeat 1 118 0 3 1986 604 276 167 0 chr1 183730065 183730257 -13465175 - RMER15 LTR ERVL -15 560 337 3 1986 257 209 65 65 chr1 183730288 183730380 -13465052 - RMER15 LTR ERVL -416 159 68 3 1986 667 247 29 73 chr1 183731996 183732201 -13463231 - B3A SINE B2 -2 196 1 4 1986 473 192 81 0 chr1 183732442 183732541 -13462891 - PB1D9 SINE Alu -13 107 1 4 1986 414 238 76 47 chr1 183733781 183733953 -13461479 + L1MB8 LINE L1 5988 6164 -14 4 1986 253 348 76 64 chr1 183735618 183735790 -13459642 - MIR SINE MIR -67 195 22 4 1986 197 348 114 18 chr1 183736595 183736709 -13458723 + L2b LINE L2 3248 3372 -3 4 1986 554 259 122 16 chr1 183736986 183737174 -13458258 + B3 SINE B2 5 212 -4 4 1986 744 160 0 44 chr1 183737431 183737614 -13457818 + GA-rich Low_complexity Low_complexity 4 178 0 4 1986 1147 259 154 43 chr1 183738239 183738631 -13456801 - RMER15 LTR ERVL 0 575 125 4 1986 1718 21 0 0 chr1 183738631 183738824 -13456608 - B2_Mm1a SINE B2 0 193 1 4 1986 1147 259 154 43 chr1 183738824 183738943 -13456489 - RMER15 LTR ERVL -451 124 7 4 1986 1200 259 71 27 chr1 183739336 183739812 -13455620 - L1M2 LINE L1 -1334 4809 4313 4 1986 460 244 0 82 chr1 183739858 183739992 -13455440 - B1_Mur2 SINE Alu -22 127 5 4 1986 263 230 138 26 chr1 183740002 183740118 -13455314 - L1M2 LINE L1 -1821 4319 4191 4 1986 1650 186 68 31 chr1 183740137 183740519 -13454913 + MTD LTR MaLR 1 396 -23 4 1986 591 277 214 57 chr1 183740538 183741607 -13453825 - L1M2 LINE L1 -1958 4188 2895 4 1986 584 233 31 0 chr1 183742353 183742482 -13452950 + ID_B1 SINE B4 87 219 -5 4 1986 189 0 0 0 chr1 183742975 183742996 -13452436 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1986 341 55 0 35 chr1 183742996 183743052 -13452380 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 4 1986 913 102 0 8 chr1 183743052 183743180 -13452252 - B1_Mus2 SINE Alu -19 128 2 4 1986 4238 64 2 17 chr1 183743193 183743736 -13451696 - L1_Mus1 LINE L1 -1 6566 6032 4 1986 792 11 138 0 chr1 183743737 183743831 -13451601 - U6 snRNA snRNA 0 107 1 4 1986 490 194 28 9 chr1 183745174 183745283 -13450149 - PB1D7 SINE Alu -1 119 9 4 1986 21 0 0 0 chr1 183746213 183746234 -13449198 + AT_rich Low_complexity Low_complexity 1 21 0 4 1986 237 238 0 0 chr1 183746708 183746771 -13448661 + A-rich Low_complexity Low_complexity 1 63 0 4 1986 901 61 123 51 chr1 183748622 183748760 -13446672 + B1_Mus1 SINE Alu 1 148 0 4 1986 210 37 0 0 chr1 183749944 183749971 -13445461 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1986 23 0 0 0 chr1 183750661 183750684 -13444748 + AT_rich Low_complexity Low_complexity 1 23 0 4 1986 818 172 14 20 chr1 183751083 183751231 -13444201 - B1_Mur1 SINE Alu 0 149 3 4 1986 284 232 18 0 chr1 183751816 183751872 -13443560 - PB1 SINE Alu -6 121 65 4 1986 1334 63 17 0 chr1 183752359 183752534 -13442898 + B2_Mm1t SINE B2 2 179 -14 4 1986 401 289 9 9 chr1 183753693 183753808 -13441624 + Tigger5 DNA MER2_type 2291 2405 -1 4 1986 3365 45 8 0 chr1 183754501 183754898 -13440534 + MTB LTR MaLR 1 400 0 4 1986 699 183 163 17 chr1 183754968 183755146 -13440286 + B3 SINE B2 5 208 -8 4 1986 394 239 0 249 chr1 183755238 183755411 -13440021 + B3 SINE B2 87 216 0 4 1986 517 221 135 15 chr1 183755439 183755572 -13439860 + B1F1 SINE Alu 1 149 0 4 1986 873 148 0 14 chr1 183755863 183756007 -13439425 - B1_Mm SINE Alu -1 146 5 4 1986 363 148 34 0 chr1 183756018 183756106 -13439326 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1986 435 113 0 0 chr1 183756528 183756599 -13438833 + (CAGG)n Simple_repeat Simple_repeat 3 73 0 4 1986 1307 27 0 0 chr1 183756634 183756781 -13438651 + B1_Mus2 SINE Alu 1 147 0 4 1986 663 144 0 0 chr1 183757677 183757788 -13437644 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 4 1986 821 107 164 0 chr1 183757795 183757935 -13437497 + B2_Mm2 SINE B2 1 163 -32 4 1986 1047 258 31 90 chr1 183757952 183758084 -13437348 + MTEa LTR MaLR 39 170 -209 4 1986 439 238 169 28 chr1 183758084 183758261 -13437171 + B3 SINE B2 2 203 -13 4 1986 1047 258 31 90 chr1 183758261 183758482 -13436950 + MTEa LTR MaLR 171 371 -8 4 1986 364 231 17 96 chr1 183758658 183758773 -13436659 + MT2B LTR ERVL 155 260 -341 4 1986 653 173 44 15 chr1 183758676 183758811 -13436621 + B1_Mur4 SINE Alu 12 150 0 4 1986 812 220 72 39 chr1 183759167 183759375 -13436057 + B3 SINE B2 1 215 -1 4 1986 1190 61 0 0 chr1 183759375 183759521 -13435911 + B1_Mus2 SINE Alu 1 147 0 4 1986 718 131 238 88 chr1 183760102 183760224 -13435208 - Lx4B LINE L1 -5 7053 6891 4 1986 2902 60 70 0 chr1 183760224 183760594 -13434838 + MTA_Mm LTR MaLR 1 396 0 4 1986 718 131 238 88 chr1 183760594 183760643 -13434789 - Lx4B LINE L1 -168 6890 6848 4 1986 1230 54 0 0 chr1 183760643 183760791 -13434641 + B1_Mus1 SINE Alu 1 148 0 4 1986 718 131 238 88 chr1 183760791 183760811 -13434621 - Lx4B LINE L1 -211 6847 6832 4 1986 1333 133 14 19 chr1 183760814 183760866 -13434566 + Lx5 LINE L1 6307 6359 -691 4 1986 1571 58 0 0 chr1 183760866 183761054 -13434378 + B2_Mm1t SINE B2 1 188 -5 4 1986 1333 133 14 19 chr1 183761054 183761216 -13434216 + Lx5 LINE L1 6360 6520 -530 4 1986 193 311 43 22 chr1 183761485 183761577 -13433855 + L2b LINE L2 2997 3090 -285 4 1986 1109 88 14 0 chr1 183761984 183762131 -13433301 + B1_Mur4 SINE Alu 2 150 0 4 1986 308 246 0 0 chr1 183762499 183762568 -13432864 - PB1D7 SINE Alu -43 77 9 4 1987 249 33 0 0 chr1 183763585 183763615 -13431817 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 4 1987 207 0 0 0 chr1 183763868 183763891 -13431541 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1987 1111 122 23 0 chr1 183764006 183764178 -13431254 + B2_Mm2 SINE B2 2 177 -18 4 1987 337 160 333 32 chr1 183764262 183764385 -13431047 + B2_Mm2 SINE B2 35 194 -1 4 1987 645 103 25 33 chr1 183764384 183764504 -13430928 + URR1B DNA MER1_type 102 220 -5 4 1987 297 307 109 0 chr1 183764532 183764633 -13430799 + PB1D7 SINE Alu 9 120 0 4 1987 1357 51 67 0 chr1 183764683 183764835 -13430597 + B2_Mm1a SINE B2 2 156 -37 4 1987 246 32 0 0 chr1 183764835 183764866 -13430566 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1987 1357 51 67 0 chr1 183764866 183764891 -13430541 + B2_Mm1a SINE B2 157 190 -3 4 1987 1380 75 16 0 chr1 183764984 183765170 -13430262 - B2_Mm1t SINE B2 -3 190 2 4 1987 219 224 118 0 chr1 183765397 183765482 -13429950 + RSINE1 SINE B4 71 165 0 4 1987 3751 78 47 11 chr1 183765529 183766058 -13429374 + L1_Mus3 LINE L1 6090 6637 -1 4 1987 992 47 86 0 chr1 183766784 183766912 -13428520 - B1_Mus2 SINE Alu -8 139 1 4 1987 274 290 113 46 chr1 183767187 183767382 -13428050 + MER5C DNA MER1_type 11 218 -95 4 1987 468 233 7 95 chr1 183767503 183767650 -13427782 + MT2B LTR ERVL 145 278 -323 4 1987 893 151 0 28 chr1 183767533 183767676 -13427756 + B1_Mus2 SINE Alu 8 146 -1 4 1987 539 177 35 14 chr1 183767705 183767848 -13427584 + G-rich Low_complexity Low_complexity 5 150 0 4 1987 302 294 129 22 chr1 183767872 183768011 -13427421 + HAL1-3A_ME LINE L1 2285 2438 -420 4 1987 329 150 38 45 chr1 183768011 183768144 -13427288 + GA-rich Low_complexity Low_complexity 4 135 0 4 1987 195 304 48 60 chr1 183768817 183768901 -13426531 - MIRm SINE MIR -123 153 71 4 1987 1282 84 39 16 chr1 183769222 183769404 -13426028 + B2_Mm2 SINE B2 2 187 -8 4 1987 457 250 37 9 chr1 183770590 183770699 -13424733 - 5S rRNA rRNA -9 112 1 4 1987 21 57 0 0 chr1 183770772 183770807 -13424625 + AT_rich Low_complexity Low_complexity 1 35 0 4 1987 560 241 80 0 chr1 183770929 183771066 -13424366 + B1_Mur3 SINE Alu 1 148 -1 4 1987 25 51 0 0 chr1 183772336 183772375 -13423057 + GC_rich Low_complexity Low_complexity 1 39 0 4 1987 491 347 57 57 chr1 183773576 183773857 -13421575 + B4A SINE B4 1 281 -11 4 1987 180 0 0 0 chr1 183773860 183773880 -13421552 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1987 26 0 0 0 chr1 183773991 183774017 -13421415 + AT_rich Low_complexity Low_complexity 1 26 0 4 1987 246 250 171 53 chr1 183775122 183775198 -13420234 - B1_Mur2 SINE Alu -51 98 14 4 1987 1227 48 0 0 chr1 183775198 183775345 -13420087 + B1_Mm SINE Alu 1 147 0 4 1987 712 182 36 14 chr1 183776468 183776607 -13418825 + B1_Mus1 SINE Alu 2 143 -5 4 1987 594 118 0 0 chr1 183776607 183776700 -13418732 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 4 1987 1186 54 0 13 chr1 183776755 183776905 -13418527 + B1_Mus1 SINE Alu 1 148 0 4 1987 378 342 0 42 chr1 183776966 183777085 -13418347 - RSINE1 SINE B4 -21 144 31 4 1987 190 145 16 31 chr1 183777232 183777296 -13418136 + T-rich Low_complexity Low_complexity 4 66 0 4 1987 534 158 221 16 chr1 183777297 183777419 -13418013 - B1_Mur3 SINE Alu -1 148 2 4 1987 189 94 0 0 chr1 183777518 183777550 -13417882 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1987 312 27 0 0 chr1 183777551 183777588 -13417844 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1987 263 284 35 167 chr1 183777605 183777833 -13417599 + MTEb LTR MaLR 182 379 0 4 1987 296 279 0 0 chr1 183778036 183778097 -13417335 - ID2 SINE ID -18 65 5 4 1987 286 227 0 96 chr1 183778113 183778186 -13417246 - ID_B1 SINE B4 -31 193 128 4 1987 250 140 0 109 chr1 183778606 183778670 -13416762 + MER67A LTR ERV1 3 59 -484 4 1987 249 301 0 24 chr1 183778675 183778760 -13416672 + T-rich Low_complexity Low_complexity 3 85 0 4 1987 600 314 113 5 chr1 183778782 183778977 -13416455 + MER67A LTR ERV1 44 259 -284 4 1987 357 24 0 0 chr1 183779223 183779265 -13416167 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1987 325 245 109 136 chr1 183779624 183779756 -13415676 - B2_Mm2 SINE B2 -14 181 54 4 1987 183 42 0 0 chr1 183779756 183779780 -13415652 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1987 989 33 99 0 chr1 183779780 183779901 -13415531 - B1_Mus1 SINE Alu -13 135 3 4 1987 325 245 109 136 chr1 183779901 183779951 -13415481 - B2_Mm2 SINE B2 -142 53 4 4 1987 608 200 83 0 chr1 183779981 183780101 -13415331 + B3 SINE B2 1 130 -86 4 1987 670 151 0 19 chr1 183780099 183780207 -13415225 - B1_Mur2 SINE Alu -21 128 23 4 1987 327 93 340 9 chr1 183780220 183780326 -13415106 - B2_Mm2 SINE B2 -8 187 47 5 1987 960 145 66 0 chr1 183780358 183780524 -13414908 - B2_Mm1t SINE B2 -15 178 2 5 1987 233 308 114 13 chr1 183780536 183780615 -13414817 - ORR1E LTR MaLR -177 182 96 5 1987 768 243 82 75 chr1 183781194 183781376 -13414056 - B4A SINE B4 -9 283 98 5 1987 237 33 0 0 chr1 183781376 183781406 -13414026 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1987 1150 49 0 40 chr1 183781406 183781556 -13413876 - B1_Mus2 SINE Alu -2 145 2 5 1987 768 243 82 75 chr1 183781556 183781652 -13413780 - B4A SINE B4 -195 97 3 5 1987 184 293 0 17 chr1 183782939 183782998 -13412434 + MIRm SINE MIR 9 66 -210 5 1987 304 190 12 12 chr1 183783127 183783207 -13412225 + G-rich Low_complexity Low_complexity 3 82 0 5 1987 231 114 0 0 chr1 183783920 183783955 -13411477 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1987 997 141 6 6 chr1 183784059 183784238 -13411194 + CT-rich Low_complexity Low_complexity 2 180 0 5 1987 1380 50 84 0 chr1 183784274 183784453 -13410979 + B2_Mm2 SINE B2 2 195 0 5 1987 216 0 0 0 chr1 183784465 183784489 -13410943 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1987 216 0 0 0 chr1 183784493 183784517 -13410915 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1987 1236 35 7 0 chr1 183784518 183784663 -13410769 + B1_Mm SINE Alu 2 147 0 5 1987 974 150 159 11 chr1 183784999 183785181 -13410251 - B3 SINE B2 -7 209 1 5 1987 210 139 23 0 chr1 183785254 183785267 -13410165 + (CAGA)n Simple_repeat Simple_repeat 2 14 0 5 1987 1585 42 0 16 chr1 183785267 183785461 -13409971 + B2_Mm1a SINE B2 3 193 0 5 1987 210 139 23 0 chr1 183785461 183785490 -13409942 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 1987 596 236 26 77 chr1 183785744 183785900 -13409532 + B1_Mur1 SINE Alu 2 149 0 5 1987 1500 69 21 0 chr1 183786406 183786594 -13408838 - B2_Mm1t SINE B2 0 193 2 5 1987 2616 164 38 6 chr1 183786612 183786696 -13408736 - RLTR16 LTR ERVK -6 499 407 5 1987 333 0 0 0 chr1 183786696 183786733 -13408699 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1987 2616 164 38 6 chr1 183786733 183787121 -13408311 - RLTR16 LTR ERVK -99 406 13 5 1987 3990 149 82 16 chr1 183787121 183787721 -13407711 - MYSERV16_I-int LTR ERVK -21 2305 1686 5 1987 3176 49 201 2 chr1 183787721 183788148 -13407284 - RLTR1B LTR ERV1 0 512 1 5 1987 3990 149 82 16 chr1 183788148 183788412 -13407020 - MYSERV16_I-int LTR ERVK -641 1685 1384 5 1987 333 0 0 0 chr1 183788432 183788469 -13406963 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1987 2780 133 45 13 chr1 183788482 183788965 -13406467 + BGLII_B LTR ERVK 9 441 0 5 1987 239 190 17 0 chr1 183788965 183789023 -13406409 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1987 478 278 9 53 chr1 183789027 183789141 -13406291 - RSINE1 SINE B4 0 165 57 5 1987 195 184 0 0 chr1 183789142 183789180 -13406252 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1987 1145 217 5 0 chr1 183789289 183789496 -13405936 + B3 SINE B2 3 210 -6 5 1987 479 274 87 27 chr1 183789500 183789650 -13405782 - B4A SINE B4 -45 247 89 5 1987 291 51 0 0 chr1 183789690 183789729 -13405703 - RMER19B LTR ERVK -863 39 1 5 1987 501 184 0 0 chr1 183789791 183789905 -13405527 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 1987 489 200 20 50 chr1 183789990 183790090 -13405342 + URR1B DNA MER1_type 1 97 -128 5 1987 402 277 32 48 chr1 183790359 183790484 -13404948 + RMER10B LTR ERVL 269 391 -7 5 1987 443 119 14 11 chr1 183790465 183790553 -13404879 + URR1B DNA MER1_type 71 155 -70 5 1987 906 103 24 0 chr1 183790553 183790679 -13404753 + B2_Mm2 SINE B2 1 129 -66 5 1987 396 0 0 0 chr1 183790682 183790726 -13404706 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1987 460 135 0 0 chr1 183790726 183790800 -13404632 + URR1B DNA MER1_type 150 223 -2 5 1987 245 266 72 18 chr1 183790800 183790837 -13404595 - CYRA11_Mm Unknown Y-chromosome -367 250 134 5 1987 1280 27 0 20 chr1 183791240 183791390 -13404042 + B1_Mus2 SINE Alu 1 147 0 5 1987 464 232 43 26 chr1 183791455 183791595 -13403837 + PB1D7 SINE Alu 19 150 0 5 1987 606 276 118 5 chr1 183791623 183791809 -13403623 - ID_B1 SINE B4 -16 208 2 5 1987 557 124 237 9 chr1 183791851 183791965 -13403467 + B1_Mur3 SINE Alu 5 144 -5 5 1987 579 276 37 0 chr1 183793560 183793694 -13401738 - RSINE1 SINE B4 -23 142 4 5 1987 220 190 35 0 chr1 183794546 183794604 -13400828 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 1987 703 132 9 0 chr1 183794605 183794711 -13400721 - B1_Mus2 SINE Alu -2 145 39 5 1987 284 261 32 64 chr1 183794646 183794740 -13400692 - RLTR25A LTR ERVK -527 576 486 5 1987 238 318 79 20 chr1 183796093 183796223 -13399209 - ORR1B1 LTR MaLR -228 166 10 5 1987 318 228 127 0 chr1 183796261 183796340 -13399092 - MLT2B3 LTR ERVL -465 89 1 5 1987 265 306 78 50 chr1 183796340 183796481 -13398951 + L2 LINE L2 2728 2872 -547 5 1987 252 214 0 0 chr1 183796488 183796544 -13398888 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1987 949 162 5 56 chr1 183796714 183796910 -13398522 + ORR1C2 LTR MaLR 1 186 -198 5 1987 327 184 23 11 chr1 183796910 183796998 -13398434 + C-rich Low_complexity Low_complexity 2 90 0 5 1987 1186 153 45 0 chr1 183796999 183797201 -13398231 + ORR1C2 LTR MaLR 174 384 0 5 1987 428 256 0 117 chr1 183797216 183797353 -13398079 + B3A SINE B2 73 193 -5 5 1987 362 224 66 18 chr1 183797727 183797836 -13397596 - PB1D9 SINE Alu 0 120 10 5 1987 3847 32 5 0 chr1 183798300 183798734 -13396698 - RLTR10C LTR ERVK 0 436 1 5 1987 6994 42 3 47 chr1 183798734 183799677 -13395755 - MMERVK10C-int LTR ERVK 0 7581 6680 5 1987 302 71 0 0 chr1 183799723 183799765 -13395667 - MMERVK10C-int LTR ERVK -889 6692 6651 5 1987 8417 41 0 0 chr1 183799756 183800777 -13394655 - MMERVK10C-int LTR ERVK -1771 5810 4790 5 1987 1939 34 0 2 chr1 183800770 183801205 -13394227 - MMERVK10C-int LTR ERVK -1100 887 652 5 1987 334 89 0 0 chr1 183801208 183801253 -13394179 - MMERVK10C-int LTR ERVK -6405 137 93 5 1987 286 115 54 54 chr1 183801253 183801345 -13394087 + CT-rich Low_complexity Low_complexity 3 94 0 5 1987 380 0 0 0 chr1 183801427 183801470 -13393962 - MMERVK10C-int LTR ERVK -7314 267 225 5 1987 256 222 0 0 chr1 183801470 183801515 -13393917 - RLTR27 LTR ERVK -34 275 231 5 1987 1483 33 0 0 chr1 183801515 183801695 -13393737 - MMERVK10C-int LTR ERVK -7401 180 1 5 1987 3486 25 6 132 chr1 183801695 183802194 -13393238 - RLTR10C LTR ERVK 0 436 1 5 1987 281 267 59 0 chr1 183802428 183802529 -13392903 + L1MB3 LINE L1 5724 5830 -341 5 1987 383 260 56 74 chr1 183802535 183802643 -13392789 + PB1D10 SINE Alu 7 112 -5 5 1987 357 318 55 55 chr1 183802643 183802933 -13392499 + L1MB3 LINE L1 5816 6105 -78 5 1987 388 316 25 17 chr1 183802933 183803052 -13392380 + RSINE1 SINE B4 14 133 -32 5 1987 270 0 0 0 chr1 183803053 183803083 -13392349 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1987 221 309 44 0 chr1 183803087 183803155 -13392277 + ID4_ SINE ID 2 72 -11 5 1987 198 103 0 0 chr1 183803155 183803184 -13392248 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1987 713 159 16 0 chr1 183803274 183803405 -13392027 - B1_Mur3 SINE Alu -5 145 2 5 1987 299 181 0 14 chr1 183803541 183803614 -13391818 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1987 280 317 115 118 chr1 183803957 183804261 -13391171 + ORR1E LTR MaLR 57 359 0 5 1987 222 37 0 0 chr1 183804525 183804552 -13390880 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 5 1987 2071 177 13 3 chr1 183804603 183804983 -13390449 + RLTR28 LTR ERVL 141 524 0 5 1987 378 91 0 0 chr1 183805094 183805149 -13390283 + (TATG)n Simple_repeat Simple_repeat 4 58 0 5 1987 1042 117 0 0 chr1 183805211 183805356 -13390076 - B1_Mur4 SINE Alu 0 150 6 5 1987 979 181 10 31 chr1 183805411 183805605 -13389827 - B2_Mm2 SINE B2 -5 190 1 5 1987 1711 21 0 0 chr1 183805623 183805813 -13389619 - B2_Mm1a SINE B2 -3 190 1 5 1987 501 92 0 0 chr1 183805871 183805947 -13389485 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 1987 1200 113 11 6 chr1 183806090 183806268 -13389164 - B2_Mm1t SINE B2 -14 179 1 5 1987 582 86 0 0 chr1 183806351 183806432 -13389000 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1987 1173 42 20 20 chr1 183806480 183806627 -13388805 + B1_Mus1 SINE Alu 2 148 0 5 1987 1148 252 87 38 chr1 183807120 183807684 -13387748 + RMER1B Other Other 7 566 -500 5 1987 4228 68 50 5 chr1 183807686 183808245 -13387187 + MT2B2 LTR ERVL 1 584 0 5 1987 4257 178 65 61 chr1 183808262 183809273 -13386159 + RMER1A Other Other 1 1015 -15 5 1987 296 285 47 86 chr1 183809277 183809534 -13385898 + RMER10A LTR ERVL 52 298 -144 5 1987 552 68 0 0 chr1 183809876 183809949 -13385483 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1987 357 24 0 0 chr1 183809949 183809990 -13385442 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1987 2050 242 138 20 chr1 183810017 183810808 -13384624 + RCHARR1 DNA MER1_type 91 974 0 5 1987 336 244 0 109 chr1 183812718 183812731 -13382701 + MT2B LTR ERVL 151 152 -449 5 1987 880 120 50 2 chr1 183812731 183812872 -13382560 + B1_Mur2 SINE Alu 1 145 -4 5 1987 185 224 67 56 chr1 183813291 183813381 -13382051 + L2 LINE L2 2980 3070 -349 5 1987 246 275 63 48 chr1 183813416 183813542 -13381890 + MER53 DNA hAT 57 184 -9 5 1987 1428 60 49 0 chr1 183813691 183813876 -13381556 - B2_Mm2 SINE B2 0 195 2 5 1987 768 224 45 77 chr1 183813912 183814134 -13381298 - B3 SINE B2 0 216 2 5 1987 1230 68 0 0 chr1 183814546 183814694 -13380738 + B1_Mus1 SINE Alu 1 148 0 5 1987 312 0 62 0 chr1 183814699 183814747 -13380685 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 5 1987 781 138 33 40 chr1 183814944 183815095 -13380337 - URR1A DNA MER1_type 0 226 77 5 1987 271 109 174 0 chr1 183815211 183815257 -13380175 + B3A SINE B2 1 54 -144 5 1987 596 215 19 0 chr1 183815553 183815660 -13379772 + B3 SINE B2 58 166 -50 5 1987 396 0 0 0 chr1 183815660 183815704 -13379728 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1987 387 238 146 8 chr1 183815831 183815954 -13379478 + ORR1D2 LTR MaLR 231 370 0 5 1987 34 55 0 0 chr1 183815955 183816010 -13379422 + AT_rich Low_complexity Low_complexity 1 55 0 5 1987 428 200 182 15 chr1 183816089 183816221 -13379211 + MLT1B LTR MaLR 163 316 -74 5 1987 578 293 95 28 chr1 183816689 183816868 -13378564 + B3A SINE B2 1 191 -7 5 1987 776 176 27 53 chr1 183816872 183817022 -13378410 + B1_Mur1 SINE Alu 4 149 0 5 1987 189 74 0 0 chr1 183817025 183817052 -13378380 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1987 212 100 25 0 chr1 183817069 183817109 -13378323 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1987 444 266 0 0 chr1 183817336 183817430 -13378002 - PB1D10 SINE Alu -19 98 5 6 1987 770 237 6 13 chr1 183817355 183817513 -13377919 - ID_B1 SINE B4 -64 160 4 6 1987 1385 40 103 0 chr1 183819581 183819756 -13375676 + B2_Mm1t SINE B2 1 193 0 6 1987 377 231 0 11 chr1 183819811 183819903 -13375529 + MLT2B4 LTR ERVL 1 91 -465 6 1987 225 0 0 0 chr1 183820702 183820727 -13374705 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 6 1987 635 237 7 22 chr1 183821304 183821442 -13373990 + ORR1E LTR MaLR 27 162 -197 6 1987 495 184 109 14 chr1 183821465 183821603 -13373829 - MT2A LTR ERVL 0 533 383 6 1987 1251 198 110 4 chr1 183821597 183821851 -13373581 - MT2A LTR ERVL -252 281 1 6 1987 558 188 9 26 chr1 183821896 183822011 -13373421 - B3 SINE B2 -100 116 4 6 1987 198 0 0 0 chr1 183822685 183822707 -13372725 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1987 947 70 0 23 chr1 183822735 183822866 -13372566 + B1_Mus1 SINE Alu 19 146 -2 6 1987 934 132 13 270 chr1 183822972 183823112 -13372320 + URR1B DNA MER1_type 1 143 -82 6 1987 1209 98 40 17 chr1 183823112 183823289 -13372143 + B2_Mm2 SINE B2 1 181 -14 6 1987 934 132 13 270 chr1 183823289 183823336 -13372096 + URR1B DNA MER1_type 144 144 -81 6 1987 661 120 20 0 chr1 183823336 183823436 -13371996 - PB1D9 SINE Alu -18 102 1 6 1987 934 132 13 270 chr1 183823436 183823547 -13371885 + URR1B DNA MER1_type 144 223 -2 6 1987 338 311 42 0 chr1 183823978 183824097 -13371335 + L1ME3A LINE L1 5619 5742 -431 6 1987 243 291 145 47 chr1 183824114 183824348 -13371084 + L1ME3A LINE L1 5832 6088 -85 6 1987 180 0 0 0 chr1 183824571 183824591 -13370841 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1987 1132 118 6 0 chr1 183824736 183824897 -13370535 - B2_Mm1t SINE B2 -30 163 2 6 1987 733 219 122 20 chr1 183824900 183825096 -13370336 - B3 SINE B2 0 216 1 6 1987 300 180 26 223 chr1 183825621 183825776 -13369656 + ORR1E LTR MaLR 216 332 -38 6 1987 1276 82 26 47 chr1 183825776 183825945 -13369487 + B2_Mm2 SINE B2 2 168 -27 6 1987 1186 90 66 0 chr1 183825945 183826112 -13369320 - B2_Mm1t SINE B2 -14 179 2 6 1987 1276 82 26 47 chr1 183826112 183826135 -13369297 + B2_Mm2 SINE B2 169 190 -5 6 1987 300 180 26 223 chr1 183826135 183826172 -13369260 + ORR1E LTR MaLR 324 370 0 6 1987 220 243 9 28 chr1 183827625 183827731 -13367701 + A-rich Low_complexity Low_complexity 2 105 0 6 1987 23 0 0 0 chr1 183828008 183828031 -13367401 + AT_rich Low_complexity Low_complexity 1 23 0 6 1987 717 238 0 7 chr1 183828246 183828381 -13367051 + B1_Mus2 SINE Alu 1 135 -12 6 1987 212 0 0 35 chr1 183828381 183828410 -13367022 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1987 717 238 0 7 chr1 183828410 183828422 -13367010 + B1_Mus2 SINE Alu 136 147 0 6 1987 897 226 67 21 chr1 183828949 183829143 -13366289 + B3 SINE B2 1 203 -13 6 1987 557 264 192 44 chr1 183831057 183831307 -13364125 + B4 SINE B4 2 288 -4 6 1987 376 250 73 0 chr1 183831908 183832004 -13363428 - PB1D10 SINE Alu -1 116 14 6 1987 1056 49 0 0 chr1 183832401 183832544 -13362888 + (CA)n Simple_repeat Simple_repeat 2 144 0 6 1987 220 194 0 0 chr1 183834511 183834547 -13360885 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 6 1987 261 0 0 0 chr1 183834547 183834576 -13360856 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1987 204 40 0 0 chr1 183836435 183836460 -13358972 + (C)n Simple_repeat Simple_repeat 1 25 0 6 1987 354 323 56 56 chr1 183836684 183836881 -13358551 - B4 SINE B4 -10 282 86 6 1987 427 299 17 0 chr1 183837221 183837338 -13358094 + MER33 DNA MER1_type 10 128 -196 6 1987 368 275 111 48 chr1 183837322 183837448 -13357984 + B3 SINE B2 15 148 -68 6 1987 608 252 99 19 chr1 183837507 183837669 -13357763 - B3 SINE B2 -41 175 1 6 1987 261 0 0 0 chr1 183837696 183837725 -13357707 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1987 455 291 29 29 chr1 183840432 183840570 -13354862 - B1F2 SINE Alu -9 140 3 6 1987 301 289 40 30 chr1 183840636 183840736 -13354696 - PB1D10 SINE Alu -12 105 5 6 1987 536 236 56 28 chr1 183840844 183840861 -13354571 - B4 SINE B4 -49 243 96 6 1987 749 136 94 16 chr1 183840861 183840988 -13354444 - B1_Mur4 SINE Alu -2 148 12 6 1987 547 259 30 41 chr1 183842245 183842414 -13353018 - ID_B1 SINE B4 -55 169 3 6 1987 305 273 178 127 chr1 183842432 183842489 -13352943 - B4A SINE B4 -1 291 121 6 1987 396 246 138 32 chr1 183842489 183842619 -13352813 - PB1D9 SINE Alu -3 146 10 6 1987 567 228 190 22 chr1 183842630 183842814 -13352618 - B3 SINE B2 0 216 2 6 1987 544 208 9 45 chr1 183843673 183843784 -13351648 + B1_Mur2 SINE Alu 43 149 0 6 1987 362 248 18 90 chr1 183843778 183843889 -13351543 + MT2B LTR ERVL 155 257 -344 6 1987 753 158 68 0 chr1 183843798 183843931 -13351501 + B1_Mur4 SINE Alu 9 150 0 6 1987 191 174 0 42 chr1 183843931 183843979 -13351453 + G-rich Low_complexity Low_complexity 4 49 0 6 1987 1087 72 7 0 chr1 183844022 183844161 -13351271 + B1_Mus2 SINE Alu 1 140 -7 6 1987 216 0 0 0 chr1 183844913 183844937 -13350495 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1987 864 325 45 31 chr1 183845390 183845683 -13349749 + Lx9 LINE L1 6873 7170 -474 6 1987 2884 131 183 10 chr1 183845683 183846004 -13349428 + RMER6C LTR ERVK 1 370 -320 6 1987 783 73 24 0 chr1 183846004 183846128 -13349304 + (GGAA)n Simple_repeat Simple_repeat 4 130 0 6 1987 2884 131 183 10 chr1 183846128 183846391 -13349041 + RMER6C LTR ERVK 371 685 -5 6 1987 864 325 45 31 chr1 183846391 183846545 -13348887 + Lx9 LINE L1 7171 7326 -318 6 1987 1302 81 48 11 chr1 183846648 183846836 -13348596 + B2_Mm2 SINE B2 1 195 0 6 1987 315 0 0 0 chr1 183846895 183846930 -13348502 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1987 1054 95 0 26 chr1 183847031 183847183 -13348249 + B1_Mus1 SINE Alu 1 148 0 6 1987 1334 52 81 0 chr1 183848017 183848189 -13347243 + B2_Mm1t SINE B2 2 187 -6 6 1987 405 0 0 0 chr1 183848324 183848369 -13347063 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1987 281 298 91 49 chr1 183848882 183849168 -13346264 + L1MC4 LINE L1 7369 7666 -376 6 1987 253 162 12 36 chr1 183849556 183849639 -13345793 + GA-rich Low_complexity Low_complexity 1 81 0 6 1987 224 292 0 59 chr1 183849644 183849746 -13345686 + G-rich Low_complexity Low_complexity 4 99 0 6 1987 1164 48 7 0 chr1 183850333 183850478 -13344954 + B1_Mm SINE Alu 2 147 0 6 1987 186 71 0 0 chr1 183850548 183850576 -13344856 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1987 519 60 0 0 chr1 183851587 183851654 -13343778 + (TAA)n Simple_repeat Simple_repeat 2 68 0 6 1987 414 151 0 0 chr1 183852009 183852082 -13343350 + (CGG)n Simple_repeat Simple_repeat 2 74 0 6 1987 1265 85 26 26 chr1 183854302 183854336 -13341096 - B2_Mm2 SINE B2 0 195 160 6 1987 387 0 0 0 chr1 183854336 183854379 -13341053 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 1987 1265 85 26 26 chr1 183854379 183854538 -13340894 - B2_Mm2 SINE B2 -36 159 2 6 1987 1200 36 0 0 chr1 183854556 183854694 -13340738 - B1_Mus2 SINE Alu -5 142 5 6 1987 386 252 47 16 chr1 183855934 183856063 -13339369 + Lx6 LINE L1 7246 7378 -82 6 1987 357 24 0 0 chr1 183856063 183856105 -13339327 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 6 1987 504 0 0 0 chr1 183856144 183856200 -13339232 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1987 189 0 0 0 chr1 183856322 183856343 -13339089 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 6 1987 21 71 0 0 chr1 183857150 183857192 -13338240 + AT_rich Low_complexity Low_complexity 1 42 0 6 1987 627 223 0 0 chr1 183857569 183857681 -13337751 - PB1D9 SINE Alu -6 114 3 6 1987 198 0 0 0 chr1 183858093 183858115 -13337317 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1987 225 0 0 0 chr1 183859197 183859222 -13336210 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1987 302 273 121 0 chr1 183859277 183859376 -13336056 + MER33 DNA MER1_type 29 139 -185 6 1987 820 199 199 0 chr1 183859407 183859583 -13335849 - B3 SINE B2 -5 211 1 6 1987 756 165 98 0 chr1 183859586 183859719 -13335713 - B1_Mur4 SINE Alu -2 148 3 6 1987 761 222 119 64 chr1 183859747 183859949 -13335483 - B3 SINE B2 0 216 4 6 1987 599 259 172 28 chr1 183860334 183860584 -13334848 + B4A SINE B4 1 286 -6 6 1987 241 131 16 16 chr1 183865107 183865169 -13330263 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1987 24 0 0 0 chr1 183865507 183865531 -13329901 + AT_rich Low_complexity Low_complexity 1 24 0 6 1987 321 26 0 0 chr1 183867984 183868022 -13327410 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1987 717 118 0 0 chr1 183868539 183868641 -13326791 + B1_Mus2 SINE Alu 9 110 -37 6 1987 185 98 0 109 chr1 183869126 183869143 -13326289 + A-rich Low_complexity Low_complexity 1 16 0 6 1987 1524 41 0 10 chr1 183869143 183869366 -13326066 + L1_Mus1 LINE L1 6374 6567 0 6 1987 1669 31 0 0 chr1 183869901 183870094 -13325338 - B2_Mm1a SINE B2 0 193 1 6 1987 1226 113 118 94 chr1 183870782 183870964 -13324468 + ORR1B2 LTR MaLR 116 324 -43 6 1987 1293 100 26 0 chr1 183870964 183871154 -13324278 + B2_Mm2 SINE B2 1 195 0 6 1987 1226 113 118 94 chr1 183871154 183871216 -13324216 + ORR1B2 LTR MaLR 325 366 -1 6 1987 235 184 139 156 chr1 183871246 183871368 -13324064 + RSINE1 SINE B4 46 165 0 6 1987 315 296 88 102 chr1 183871461 183871687 -13323745 + B4A SINE B4 2 224 0 6 1987 1531 38 21 0 chr1 183871822 183872008 -13323424 + B2_Mm2 SINE B2 1 190 -5 6 1987 576 209 35 9 chr1 183872018 183872134 -13323298 + B3 SINE B2 12 130 -86 6 1987 1469 155 174 43 chr1 183872537 183872928 -13322504 - RMER10A LTR ERVL 0 442 1 6 1987 561 239 97 0 chr1 183873229 183873363 -13322069 + B1_Mur1 SINE Alu 3 149 0 6 1987 21 0 0 0 chr1 183873499 183873520 -13321912 + AT_rich Low_complexity Low_complexity 1 21 0 6 1987 766 181 15 0 chr1 183874326 183874459 -13320973 + B1_Mur2 SINE Alu 1 135 -14 6 1987 2065 174 63 10 chr1 183874459 183874854 -13320578 + MTC LTR MaLR 5 420 -1 7 1987 922 46 123 0 chr1 183874879 183875009 -13320423 + B1_Mm SINE Alu 2 147 0 7 1987 182 132 53 0 chr1 183875020 183875058 -13320374 + A-rich Low_complexity Low_complexity 4 43 0 7 1987 2552 46 140 8 chr1 183875598 183875970 -13319462 + BGLII LTR ERVK 1 421 0 7 1987 663 214 10 44 chr1 183876341 183876601 -13318831 + RMER3D-int LTR ERVK 668 853 -1989 7 1987 483 191 38 0 chr1 183876696 183876801 -13318631 + RMER3D-int LTR ERVK 489 597 -2245 7 1987 2444 171 97 56 chr1 183876834 183877442 -13317990 + RMER3D-int LTR ERVK 1014 1646 -1196 7 1987 2794 196 67 51 chr1 183877480 183878378 -13317054 + RMER3D-int LTR ERVK 1926 2837 -5 7 1987 2289 86 163 0 chr1 183878382 183878744 -13316688 + BGLII LTR ERVK 1 421 0 7 1987 934 93 8 0 chr1 183878937 183879066 -13316366 - B1_Mus2 SINE Alu -17 130 1 7 1987 3487 20 2 0 chr1 183879411 183879806 -13315626 + MTA_Mm LTR MaLR 1 396 0 7 1987 496 230 78 6 chr1 183879851 183880017 -13315415 + Lx8 LINE L1 6974 7151 -322 7 1987 201 309 103 52 chr1 183881234 183881350 -13314082 + MIRb SINE MIR 77 198 -70 7 1987 574 235 36 29 chr1 183881593 183881733 -13313699 + B1_Mus2 SINE Alu 6 146 -1 7 1987 191 36 36 0 chr1 183881753 183881781 -13313651 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1987 186 71 0 0 chr1 183882680 183882708 -13312724 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1987 415 141 13 66 chr1 183883069 183883145 -13312287 + ID4_ SINE ID 3 74 -9 7 1987 282 158 49 0 chr1 183883145 183883227 -13312205 + GA-rich Low_complexity Low_complexity 3 88 0 7 1987 1198 77 29 23 chr1 183883265 183883439 -13311993 + B2_Mm2 SINE B2 2 176 -19 7 1987 315 228 202 47 chr1 183883911 183883937 -13311495 - B4A SINE B4 -49 243 95 7 1987 581 165 29 0 chr1 183883937 183884040 -13311392 - PB1D9 SINE Alu -5 115 10 7 1987 531 173 230 13 chr1 183884056 183884208 -13311224 - B2_Mm2 SINE B2 -6 189 5 7 1987 450 0 0 0 chr1 183884881 183884931 -13310501 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1987 595 181 112 0 chr1 183885750 183885866 -13309566 + URR1B DNA MER1_type 7 135 -90 7 1987 370 269 21 21 chr1 183885999 183886094 -13309338 + PB1 SINE Alu 19 113 -14 7 1987 681 156 18 0 chr1 183886244 183886353 -13309079 - PB1D9 SINE Alu -7 113 3 7 1987 1143 68 0 13 chr1 183887235 183887385 -13308047 - B1_Mus1 SINE Alu 0 148 1 7 1987 311 285 101 26 chr1 183887393 183887620 -13307812 - L1M5 LINE L1 -474 5766 5523 7 1987 415 284 106 68 chr1 183887826 183888147 -13307285 - L1M5 LINE L1 -932 5214 4882 7 1987 933 246 279 11 chr1 183888500 183888782 -13306650 + ORR1E LTR MaLR 2 359 0 7 1987 323 123 123 0 chr1 183889085 183889150 -13306282 + Lx3_Mus LINE L1 6929 7001 -8 7 1987 780 173 53 0 chr1 183889574 183889707 -13305725 - B1_Mur2 SINE Alu -9 140 1 7 1987 360 315 80 80 chr1 183889707 183889736 -13305696 - B4 SINE B4 -75 217 56 7 1987 1062 112 0 0 chr1 183889806 183889966 -13305466 + (CA)n Simple_repeat Simple_repeat 1 160 0 7 1987 622 226 150 18 chr1 183890124 183890291 -13305141 + B3 SINE B2 1 189 -27 7 1987 1087 73 0 0 chr1 183891425 183891561 -13303871 + B1_Mus2 SINE Alu 2 137 -10 7 1987 296 0 51 0 chr1 183891561 183891600 -13303832 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 7 1987 270 314 15 76 chr1 183891711 183891842 -13303590 + RSINE1 SINE B4 41 163 -2 7 1987 22 56 0 0 chr1 183892053 183892089 -13303343 + AT_rich Low_complexity Low_complexity 1 36 0 7 1987 714 237 27 33 chr1 183892532 183892715 -13302717 + B3A SINE B2 1 182 -16 7 1987 425 212 250 14 chr1 183893107 183893255 -13302177 + URR1A DNA MER1_type 1 183 -43 7 248 415 226 33 57 chr1 183893982 183894104 -13301328 + PB1D9 SINE Alu 2 120 0 7 1988 23 0 0 0 chr1 183894306 183894329 -13301103 + AT_rich Low_complexity Low_complexity 1 23 0 7 1988 504 232 152 0 chr1 183894478 183894590 -13300842 - B1_Mur3 SINE Alu -20 129 1 7 1988 618 195 302 49 chr1 183894624 183894786 -13300646 + B3 SINE B2 2 204 -12 7 1988 267 356 19 19 chr1 183894898 183895001 -13300431 + PB1D10 SINE Alu 2 104 -13 7 1988 261 0 0 0 chr1 183895334 183895363 -13300069 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1988 261 315 124 16 chr1 183895831 183895960 -13299472 - L2 LINE L2 -549 2870 2728 7 1988 429 147 30 50 chr1 183896046 183896146 -13299286 + MER57A-int LTR ERV1 5824 5921 -266 7 1988 366 80 0 0 chr1 183896709 183896759 -13298673 + (TATG)n Simple_repeat Simple_repeat 4 53 0 7 1988 257 174 53 54 chr1 183896803 183896887 -13298545 - B3 SINE B2 -73 120 1 7 1988 548 208 139 0 chr1 183897186 183897287 -13298145 - B1_Mur2 SINE Alu -34 115 1 7 1988 409 288 80 12 chr1 183897355 183897517 -13297915 + MLT1B LTR MaLR 172 344 -46 7 1988 188 260 64 91 chr1 183898009 183898119 -13297313 - L4 LINE RTE -1025 1004 898 7 1988 453 283 161 0 chr1 183898232 183898392 -13297040 + ID_B1 SINE B4 9 208 -16 7 1988 284 236 187 22 chr1 183898428 183898519 -13296913 - PB1D9 SINE Alu -6 114 9 7 1988 342 293 173 37 chr1 183898920 183899111 -13296321 - MTEb LTR MaLR -11 368 152 7 1988 1185 131 11 0 chr1 183899672 183899848 -13295584 + B2_Mm1t SINE B2 2 179 -14 7 1988 255 184 20 0 chr1 183899895 183899944 -13295488 + B2_Mm2 SINE B2 47 96 -99 7 1988 21 57 0 0 chr1 183899944 183899979 -13295453 + AT_rich Low_complexity Low_complexity 1 35 0 7 1988 912 251 82 6 chr1 183900489 183900806 -13294626 + L1MB3 LINE L1 5662 6002 -181 7 1988 463 238 16 0 chr1 183900977 183901103 -13294329 + L1MB3 LINE L1 6046 6173 -10 7 1988 814 209 6 39 chr1 183901227 183901406 -13294026 + B2_Mm2 SINE B2 2 174 -21 7 1988 198 0 0 0 chr1 183901409 183901431 -13294001 + (TC)n Simple_repeat Simple_repeat 1 22 0 7 1988 223 308 62 0 chr1 183901473 183901538 -13293894 + B3 SINE B2 100 168 -48 7 1988 498 253 191 9 chr1 183901592 183901762 -13293670 - MTD LTR MaLR -36 383 179 7 1988 235 250 0 68 chr1 183901762 183901835 -13293597 + polypyrimidine Low_complexity Low_complexity 2 69 0 7 1988 500 243 126 52 chr1 183901839 183902030 -13293402 - B3 SINE B2 -11 205 1 7 1988 583 291 33 0 chr1 183902032 183902183 -13293249 - MTD LTR MaLR -210 209 54 7 1988 437 295 103 60 chr1 183902188 183902440 -13292992 + MTD LTR MaLR 117 388 -31 7 1988 517 284 45 0 chr1 183903400 183903534 -13291898 + B1F SINE Alu 10 149 0 7 1988 189 171 0 0 chr1 183903600 183903635 -13291797 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 7 1988 192 280 40 0 chr1 183904147 183904197 -13291235 + MIR3 SINE MIR 148 199 -9 7 1988 234 325 36 36 chr1 183904603 183904686 -13290746 + Tigger12A DNA MER2_type 693 775 -16 7 1988 306 261 141 43 chr1 183904776 183904868 -13290564 + PB1D10 SINE Alu 1 101 -16 7 1988 1115 43 14 28 chr1 183906174 183906319 -13289113 - B1_Mus1 SINE Alu -5 143 1 7 1988 387 0 0 0 chr1 183906430 183906473 -13288959 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1988 556 193 0 76 chr1 183906483 183906601 -13288831 - B1F SINE Alu -30 119 11 7 1988 23 0 0 0 chr1 183906686 183906709 -13288723 + AT_rich Low_complexity Low_complexity 1 23 0 7 1988 965 231 14 24 chr1 183906782 183906995 -13288437 + B3 SINE B2 1 211 -5 7 1988 265 205 169 0 chr1 183907488 183907571 -13287861 + MLT1A1 LTR MaLR 48 144 -264 7 1988 585 118 11 21 chr1 183907637 183907732 -13287700 + B1_Mur4 SINE Alu 57 150 0 7 1988 476 256 96 0 chr1 183907781 183907906 -13287526 + MLT1A1 LTR MaLR 260 396 -12 7 1988 6287 143 97 10 chr1 183908037 183910012 -13285420 + Lx2B LINE L1 4847 7000 0 7 1988 625 274 13 52 chr1 183910055 183910209 -13285223 + B3 SINE B2 15 162 -54 7 1988 241 191 0 0 chr1 183910873 183910920 -13284512 - Charlie26a DNA MER1_type -30 295 249 7 1988 192 77 0 0 chr1 183910975 183911001 -13284431 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1988 694 226 104 36 chr1 183911765 183911958 -13283474 + ID_B1 SINE B4 18 223 -1 7 1988 1487 43 5 5 chr1 183911991 183912178 -13283254 + B2_Mm2 SINE B2 4 190 -5 7 1988 198 0 0 0 chr1 183912377 183912399 -13283033 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1988 468 237 52 30 chr1 183912527 183912662 -13282770 + B1F SINE Alu 1 138 -11 7 1988 237 276 0 17 chr1 183912684 183912743 -13282689 + GA-rich Low_complexity Low_complexity 4 61 0 7 1988 525 187 3 41 chr1 183912746 183912864 -13282568 + PB1D9 SINE Alu 5 120 0 7 1988 593 206 28 21 chr1 183912881 183913025 -13282407 + B1_Mur3 SINE Alu 1 145 -4 7 1988 389 258 70 65 chr1 183913056 183913255 -13282177 + L1M5 LINE L1 3071 3270 -2876 7 1988 912 227 14 24 chr1 183913309 183913517 -13281915 - B3 SINE B2 -6 210 5 7 1988 372 233 327 30 chr1 183914201 183914356 -13281076 + B4 SINE B4 1 201 -91 7 1988 778 188 15 0 chr1 183914351 183914484 -13280948 + B1_Mus1 SINE Alu 8 142 -6 7 1988 279 310 64 76 chr1 183914353 183914510 -13280922 + B4A SINE B4 94 248 -44 7 1988 308 102 0 0 chr1 183914566 183914615 -13280817 + B2_Mm1t SINE B2 1 49 -144 7 1988 330 152 0 0 chr1 183914617 183914676 -13280756 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1988 244 154 0 25 chr1 183914704 183914744 -13280688 + B3A SINE B2 1 39 -159 7 1988 1186 62 0 0 chr1 183914745 183914890 -13280542 + B1_Mm SINE Alu 1 145 -2 7 1988 180 0 0 0 chr1 183914890 183914910 -13280522 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1988 406 301 7 71 chr1 183915018 183915172 -13280260 + RSINE1 SINE B4 3 146 -19 7 1988 1164 75 0 0 chr1 183915412 183915559 -13279873 - B1_Mm SINE Alu 0 147 1 7 1988 230 327 123 19 chr1 183915577 183915683 -13279749 + PB1D10 SINE Alu 1 117 0 7 1988 2165 140 55 3 chr1 183915914 183916279 -13279153 - ORR1C2 LTR MaLR 0 384 1 8 1988 429 286 9 9 chr1 183916329 183916442 -13278990 - PB1D7 SINE Alu -1 119 7 8 1988 258 32 0 0 chr1 183916710 183916741 -13278691 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1988 632 266 38 38 chr1 183917265 183917476 -13277956 + Lx8 LINE L1 7067 7277 -196 8 1988 450 326 58 5 chr1 183917888 183918076 -13277356 - MIRb SINE MIR -42 226 25 8 1988 864 73 121 0 chr1 183918080 183918204 -13277228 + B1_Mm SINE Alu 1 139 -8 8 1988 213 65 0 0 chr1 183918204 183918235 -13277197 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1988 328 42 146 0 chr1 183918951 183918999 -13276433 - B2_Mm2 SINE B2 -94 101 47 8 1988 1144 77 65 6 chr1 183919046 183919215 -13276217 - B2_Mm1t SINE B2 -14 179 1 8 1988 252 261 79 11 chr1 183919476 183919565 -13275867 + B1F1 SINE Alu 19 113 -36 8 1988 403 282 54 18 chr1 183919597 183919709 -13275723 + B3A SINE B2 2 117 -81 8 1988 327 315 192 16 chr1 183919720 183919965 -13275467 + L1ME3B LINE L1 5662 5949 -291 8 1988 277 188 0 23 chr1 183920066 183920153 -13275279 + L1M4 LINE L1 5353 5437 -747 8 1988 288 291 0 12 chr1 183920165 183920245 -13275187 + B2_Mm2 SINE B2 1 79 -116 8 1988 251 164 218 0 chr1 183920245 183920300 -13275132 + B3 SINE B2 125 191 -25 8 1988 303 85 0 0 chr1 183920304 183920351 -13275081 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1988 290 298 0 12 chr1 183920417 183920502 -13274930 + GA-rich Low_complexity Low_complexity 5 88 0 8 1988 198 0 0 0 chr1 183920603 183920625 -13274807 + (TCC)n Simple_repeat Simple_repeat 2 23 0 8 1988 1120 82 7 0 chr1 183920658 183920804 -13274628 + B1_Mus2 SINE Alu 1 147 0 8 1988 252 122 0 0 chr1 183920804 183920845 -13274587 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1988 181 242 209 61 chr1 183920882 183921045 -13274387 + L2a LINE L2 3200 3386 -40 8 1988 1197 342 85 58 chr1 183921471 183922057 -13273375 - MER21B LTR ERV1 -261 602 1 8 1988 353 250 12 12 chr1 183922600 183922681 -13272751 + ID2 SINE ID 3 83 0 8 1988 456 91 0 0 chr1 183923239 183923305 -13272127 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1988 23 0 0 0 chr1 183924383 183924406 -13271026 + AT_rich Low_complexity Low_complexity 1 23 0 8 1988 227 237 32 48 chr1 183924756 183924880 -13270552 - RMER10B LTR ERVL -83 315 194 8 1988 360 0 0 0 chr1 183924882 183924922 -13270510 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1988 346 357 79 8 chr1 183925149 183925276 -13270156 + RSINE1 SINE B4 6 141 -24 8 1988 477 0 0 0 chr1 183925281 183925334 -13270098 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1988 505 185 193 0 chr1 183925415 183925534 -13269898 + B1_Mur1 SINE Alu 1 142 -7 8 1988 774 260 47 0 chr1 183925552 183925744 -13269688 + B3 SINE B2 4 204 -12 8 1988 207 0 0 0 chr1 183926194 183926217 -13269215 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1988 584 171 14 0 chr1 183926789 183926912 -13268520 - B3 SINE B2 -65 130 1 8 1988 328 276 50 20 chr1 183927235 183927335 -13268097 + B1F SINE Alu 47 149 0 8 1988 370 296 28 40 chr1 183928102 183928285 -13267147 + L1M5 LINE L1 5485 5667 -457 8 1988 540 128 0 0 chr1 183928515 183928593 -13266839 + B1_Mur3 SINE Alu 57 134 -15 8 1988 612 222 20 2 chr1 183928656 183928793 -13266639 + B1_Mur3 SINE Alu 2 146 -1 8 1988 301 292 9 28 chr1 183928917 183929026 -13266406 + PB1D10 SINE Alu 1 107 -10 8 1988 250 302 134 10 chr1 183929309 183929406 -13266026 + B1F1 SINE Alu 36 144 -5 8 1988 246 244 12 47 chr1 183929422 183929508 -13265924 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 8 1988 244 48 23 23 chr1 183929586 183929629 -13265803 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1988 1437 51 17 0 chr1 183929767 183929944 -13265488 - B2_Mm2 SINE B2 -15 180 1 8 1988 299 179 0 118 chr1 183930128 183930202 -13265230 + L1MB3 LINE L1 6070 6138 -45 8 1988 1569 37 5 0 chr1 183930202 183930389 -13265043 + B2_Mm1a SINE B2 1 188 -5 8 1988 299 179 0 118 chr1 183930389 183930441 -13264991 + L1MB3 LINE L1 6139 6181 -2 8 1988 21 0 0 0 chr1 183931099 183931120 -13264312 + AT_rich Low_complexity Low_complexity 1 21 0 8 1988 194 0 0 37 chr1 183931232 183931259 -13264173 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 8 1988 582 241 127 11 chr1 183931321 183931510 -13263922 - B3 SINE B2 -5 211 1 8 1988 1295 91 43 0 chr1 183931761 183931947 -13263485 + B2_Mm2 SINE B2 1 194 -1 8 1988 183 42 0 0 chr1 183932448 183932472 -13262960 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1988 1188 48 0 0 chr1 183932472 183932610 -13262822 - B1_Mus2 SINE Alu -8 139 2 8 1988 642 165 125 8 chr1 183932759 183932887 -13262545 - B1_Mus2 SINE Alu -3 144 2 8 1988 287 345 23 11 chr1 183932962 183933050 -13262382 + MIRc SINE MIR 43 131 -137 8 1988 416 275 23 8 chr1 183933157 183933289 -13262143 - L1M4 LINE L1 -1727 4419 4286 8 1988 349 258 180 31 chr1 183933461 183933589 -13261843 + MLT1C LTR MaLR 57 203 -264 8 1988 259 258 76 0 chr1 183933884 183933950 -13261482 - ID4_ SINE ID -9 74 4 8 1988 261 226 0 61 chr1 183934198 183934264 -13261168 - RSINE1 SINE B4 0 165 104 8 1988 3526 113 117 31 chr1 183934272 183934940 -13260492 + RMER6A LTR ERVK 1 725 -31 8 1988 680 199 172 6 chr1 183935785 183935942 -13259490 - URR1A DNA MER1_type -43 183 1 8 1988 258 32 0 0 chr1 183936029 183936060 -13259372 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1988 372 228 132 47 chr1 183936203 183936309 -13259123 - B1F1 SINE Alu 0 149 35 8 1988 232 351 32 0 chr1 183936938 183937032 -13258400 + MIRb SINE MIR 69 165 -103 8 1988 42 0 0 0 chr1 183937214 183937256 -13258176 + AT_rich Low_complexity Low_complexity 1 42 0 8 1988 445 248 34 17 chr1 183937409 183937528 -13257904 + B1F SINE Alu 23 143 -6 8 1988 1609 37 0 0 chr1 183937538 183937725 -13257707 + B2_Mm1t SINE B2 2 188 -5 8 1988 1161 68 0 7 chr1 183937768 183937916 -13257516 + B1_Mm SINE Alu 1 147 0 8 1988 366 342 44 0 chr1 183938009 183938123 -13257309 + MLT1H2 LTR MaLR 58 176 -313 8 1988 512 278 148 62 chr1 183938213 183938544 -13256888 + MTE2a LTR MaLR 5 393 -3 8 1988 358 208 113 10 chr1 183939181 183939278 -13256154 + PB1D10 SINE Alu 11 117 0 8 1988 220 269 19 37 chr1 183939436 183939490 -13255942 - PB1D9 SINE Alu -62 58 6 8 1988 343 188 0 158 chr1 183939493 183939575 -13255857 + BC1_Mm scRNA scRNA 2 70 -82 8 1988 253 273 40 129 chr1 183939575 183939594 -13255838 + ID_B1 SINE B4 2 93 -131 8 1988 597 318 6 13 chr1 183939726 183939882 -13255550 - RSINE1 SINE B4 -3 162 8 8 1988 4902 66 32 6 chr1 183939911 183940564 -13254868 + L1_Mus1 LINE L1 5898 6567 0 8 1988 695 339 100 4 chr1 183940697 183940958 -13254474 + B4A SINE B4 5 290 -2 8 1988 1202 27 0 20 chr1 183941040 183941190 -13254242 - B1_Mm SINE Alu 0 147 1 8 1988 662 153 86 58 chr1 183941406 183941545 -13253887 + B1_Mus2 SINE Alu 1 143 -4 8 1988 360 0 0 0 chr1 183941545 183941585 -13253847 + (TAA)n Simple_repeat Simple_repeat 2 41 0 8 1988 219 69 0 0 chr1 183942057 183942086 -13253346 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8 1988 223 246 0 34 chr1 183942109 183942168 -13253264 + G-rich Low_complexity Low_complexity 4 60 0 8 1988 444 288 82 22 chr1 183942308 183942443 -13252989 - RSINE1 SINE B4 -17 148 6 8 1988 823 244 128 3 chr1 183942938 183943267 -13252165 - L1MB7 LINE L1 -263 5921 5552 8 1988 328 348 149 5 chr1 183943339 183943547 -13251885 - MIRb SINE MIR -17 251 14 8 1988 227 167 62 0 chr1 183943874 183943922 -13251510 - L1M4 LINE L1 -581 5597 5547 8 1988 190 51 0 71 chr1 183945300 183945342 -13250090 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1988 935 137 0 27 chr1 183945358 183945508 -13249924 + B1_Mus1 SINE Alu 2 147 -1 8 1988 801 264 51 28 chr1 183946202 183946416 -13249016 + ID_B1 SINE B4 4 222 -2 8 1988 480 175 0 0 chr1 183946437 183946534 -13248898 + (TA)n Simple_repeat Simple_repeat 2 98 0 8 1988 1214 61 0 0 chr1 183946834 183946981 -13248451 + B1_Mm SINE Alu 1 147 0 8 1988 24 0 0 0 chr1 183946981 183947005 -13248427 + AT_rich Low_complexity Low_complexity 1 24 0 8 1988 22 88 0 0 chr1 183949573 183949630 -13245802 + GC_rich Low_complexity Low_complexity 1 57 0 8 1988 274 259 21 7 chr1 183949890 183949976 -13245456 + (CCG)n Simple_repeat Simple_repeat 2 88 0 8 1988 243 88 0 0 chr1 183949976 183950010 -13245422 + (TCCG)n Simple_repeat Simple_repeat 1 34 0 8 1988 274 259 21 7 chr1 183950010 183950063 -13245369 + (CCG)n Simple_repeat Simple_repeat 2 55 0 8 1988 31 26 0 0 chr1 183950099 183950137 -13245295 + GC_rich Low_complexity Low_complexity 1 38 0 8 1988 223 279 0 0 chr1 183950152 183950213 -13245219 + C-rich Low_complexity Low_complexity 102 162 0 8 1988 204 182 0 0 chr1 183950675 183950719 -13244713 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1988 403 313 100 9 chr1 183952448 183952633 -13242799 - MIR3 SINE MIR -5 203 3 8 1988 264 206 56 42 chr1 183952884 183952955 -13242477 - ID4 SINE ID -10 73 2 8 1988 183 42 0 0 chr1 183953445 183953469 -13241963 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1988 277 282 22 66 chr1 183954244 183954335 -13241097 + AmnSINE1 SINE SINE 261 347 -228 8 1988 331 274 9 47 chr1 183954343 183954450 -13240982 + ID_B1 SINE B4 93 195 -29 9 1988 567 107 0 0 chr1 183954579 183954663 -13240769 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 9 1988 1230 54 0 0 chr1 183954927 183955075 -13240357 + B1_Mus1 SINE Alu 1 148 0 9 1988 430 256 33 25 chr1 183955117 183955237 -13240195 + ID_B1 SINE B4 102 222 -2 9 1988 571 348 89 77 chr1 183957613 183958018 -13237414 + MLT1H2 LTR MaLR 10 428 -61 9 1988 297 176 42 56 chr1 183958018 183958090 -13237342 - ID4_ SINE ID -11 72 2 9 1988 571 348 89 77 chr1 183958090 183958154 -13237278 + MLT1H2 LTR MaLR 429 485 -4 9 1988 461 180 220 0 chr1 183959673 183959773 -13235659 + B1_Mur1 SINE Alu 21 142 -7 9 1988 1425 64 21 0 chr1 183959788 183959975 -13235457 + B2_Mm1t SINE B2 2 192 -1 9 1988 721 216 46 56 chr1 183960179 183960395 -13235037 - B3 SINE B2 -1 215 2 9 1988 340 292 32 40 chr1 183960546 183960671 -13234761 + MT2B LTR ERVL 153 276 -325 9 1988 645 139 90 37 chr1 183960563 183960697 -13234735 + B1_Mus2 SINE Alu 6 146 -1 9 1988 358 180 54 12 chr1 183960903 183961011 -13234421 - PB1D10 SINE Alu -21 128 15 9 1988 606 140 0 0 chr1 183961024 183961124 -13234308 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 9 1988 363 232 62 21 chr1 183961146 183961243 -13234189 - MTD LTR MaLR -56 363 263 9 1988 551 35 244 0 chr1 183961327 183961413 -13234019 + B2_Mm2 SINE B2 1 107 -88 9 1988 180 0 0 0 chr1 183961681 183961701 -13233731 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 1988 686 211 49 0 chr1 183961710 183961833 -13233599 - RSINE1 SINE B4 -17 148 20 9 1988 482 291 18 0 chr1 183961830 183961940 -13233492 + RSINE1 SINE B4 6 117 -48 9 1988 219 88 0 0 chr1 183961940 183961974 -13233458 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1988 786 194 7 14 chr1 183962064 183962210 -13233222 - B1_Mur2 SINE Alu 0 149 5 9 1988 324 0 0 0 chr1 183962221 183962257 -13233175 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1988 515 276 186 78 chr1 183962422 183962962 -13232470 + L1MB3 LINE L1 5484 6130 -53 9 1988 565 198 23 92 chr1 183962962 183963135 -13232297 + RSINE1 SINE B4 3 163 -2 9 1988 515 276 178 90 chr1 183963135 183963200 -13232232 + L1MB3 LINE L1 6131 6183 0 9 1988 471 149 20 27 chr1 183963251 183963340 -13232092 + PB1 SINE Alu 26 111 -6 9 1988 280 356 65 59 chr1 183963347 183963517 -13231915 + Tigger15a DNA TcMar 124 294 -421 9 1988 465 19 0 0 chr1 183963796 183963850 -13231582 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 9 1988 752 19 38 0 chr1 183963850 183963956 -13231476 + (GGGAA)n Simple_repeat Simple_repeat 2 111 0 9 1988 221 163 23 0 chr1 183964036 183964079 -13231353 + (CGGGG)n Simple_repeat Simple_repeat 1 44 0 9 1988 603 222 71 0 chr1 183964525 183964651 -13230781 + RSINE1 SINE B4 3 137 -28 9 1988 29 0 0 0 chr1 183964658 183964687 -13230745 + AT_rich Low_complexity Low_complexity 1 29 0 9 1988 252 350 47 11 chr1 183964687 183964854 -13230578 + MIRm SINE MIR 22 195 -73 9 1988 402 21 0 0 chr1 183964981 183965028 -13230404 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 9 1988 1064 16 0 8 chr1 183965028 183965157 -13230275 - B1_Mm SINE Alu -2 145 18 9 1988 30 0 0 0 chr1 183965662 183965692 -13229740 + AT_rich Low_complexity Low_complexity 1 30 0 9 1988 541 263 73 49 chr1 183965702 183965906 -13229526 + B3 SINE B2 1 209 -7 9 1988 693 227 47 124 chr1 183965912 183965981 -13229451 + L1MB2 LINE L1 5769 5828 -361 9 1988 922 198 57 10 chr1 183965981 183966175 -13229257 + ID_B1 SINE B4 4 206 -18 9 1988 778 214 58 38 chr1 183966175 183966430 -13229002 + L1MB2 LINE L1 5815 6068 -115 9 1988 371 200 0 36 chr1 183966515 183966598 -13228834 + L1MB2 LINE L1 6058 6137 -46 9 1988 2353 143 35 52 chr1 183966604 183967031 -13228401 + MTC LTR MaLR 1 420 -1 9 1988 2774 152 2 21 chr1 183967366 183967836 -13227596 + RMER4A LTR ERVK 6 466 0 9 1988 383 128 58 93 chr1 183968167 183968253 -13227179 - B1F SINE Alu -60 89 7 9 1988 751 263 88 16 chr1 183968470 183968663 -13226769 - B3 SINE B2 -5 211 5 9 1988 545 300 126 76 chr1 183969023 183969184 -13226248 + MER110A LTR ERV1 55 253 -215 9 1988 1215 54 14 0 chr1 183969184 183969332 -13226100 + B1_Mur4 SINE Alu 1 150 0 9 1988 545 300 126 76 chr1 183969332 183969552 -13225880 + MER110A LTR ERV1 254 455 -13 9 1988 423 131 9 147 chr1 183969636 183969752 -13225680 - B3A SINE B2 0 198 99 9 1988 298 323 67 41 chr1 183969759 183969953 -13225479 - MIRc SINE MIR -1 267 69 9 1988 344 290 23 31 chr1 183970215 183970343 -13225089 + PB1 SINE Alu 1 127 0 9 1988 666 179 18 0 chr1 183970354 183970466 -13224966 + B1_Mus1 SINE Alu 34 147 -1 9 1988 470 274 0 19 chr1 183970493 183970601 -13224831 + RMER30 DNA MER1_type 97 202 0 9 1988 1005 262 72 82 chr1 183970777 183971180 -13224252 - MLT1C LTR MaLR -68 399 1 9 1988 1536 117 80 90 chr1 183971435 183971626 -13223806 - ORR1A3 LTR MaLR -28 298 88 9 1988 1235 36 0 0 chr1 183971626 183971766 -13223666 + B1_Mus1 SINE Alu 3 142 -6 9 1988 207 0 0 0 chr1 183971768 183971791 -13223641 + (GA)n Simple_repeat Simple_repeat 2 24 0 9 1988 1536 117 80 90 chr1 183971791 183971897 -13223535 - ORR1A3 LTR MaLR -239 87 1 9 1988 762 170 13 54 chr1 183971952 183972101 -13223331 - B1_Mur2 SINE Alu 0 149 7 9 1988 248 287 63 143 chr1 183972077 183972114 -13223318 - MT2B LTR ERVL -314 287 212 9 1988 296 273 131 0 chr1 183972114 183972213 -13223219 - ID_B1 SINE B4 -29 195 84 9 1988 248 287 63 143 chr1 183972213 183972252 -13223180 - MT2B LTR ERVL -314 211 127 9 1988 270 0 0 0 chr1 183972468 183972498 -13222934 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1988 474 224 103 8 chr1 183972695 183972821 -13222611 - B1F1 SINE Alu -1 148 11 9 1988 27 0 0 0 chr1 183972916 183972943 -13222489 + AT_rich Low_complexity Low_complexity 1 27 0 9 1988 277 273 7 147 chr1 183973089 183973239 -13222193 + MT2B LTR ERVL 153 281 -320 9 1988 464 302 8 8 chr1 183973123 183973250 -13222182 + B1F SINE Alu 17 143 -6 9 1988 912 81 105 0 chr1 183973260 183973384 -13222048 + B1_Mus2 SINE Alu 1 137 -10 9 1988 239 0 32 0 chr1 183973384 183973415 -13222017 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 9 1988 279 326 74 0 chr1 183973437 183973532 -13221900 + PB1 SINE Alu 6 107 -20 9 1988 805 59 0 0 chr1 183973637 183973738 -13221694 + B2_Mm2 SINE B2 1 101 -94 9 1988 258 56 0 0 chr1 183973763 183973799 -13221633 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 9 1988 550 243 110 14 chr1 183973824 183973970 -13221462 + RSINE1 SINE B4 6 165 0 9 1988 339 304 34 51 chr1 183974208 183974326 -13221106 - L1MEg LINE L1 -4127 1957 1842 9 1988 477 148 0 0 chr1 183974327 183974408 -13221024 + (TC)n Simple_repeat Simple_repeat 2 82 0 9 1988 602 242 90 18 chr1 183974409 183974565 -13220867 - ID_B1 SINE B4 -46 246 86 9 1988 368 274 64 21 chr1 183975184 183975306 -13220126 - B1F SINE Alu -22 125 1 9 1988 293 345 67 8 chr1 183975565 183975685 -13219747 + Charlie15a DNA MER1_type 66 192 -32 9 1988 243 308 0 42 chr1 183976231 183976326 -13219106 + MLT1J2 LTR MaLR 276 366 -82 9 1988 377 199 349 67 chr1 183976559 183976739 -13218693 - B3 SINE B2 0 216 10 9 1988 2179 116 0 16 chr1 183977454 183977777 -13217655 - MTC LTR MaLR 0 421 104 9 1988 233 131 48 32 chr1 183977781 183977844 -13217588 + T-rich Low_complexity Low_complexity 4 67 0 9 1988 1105 83 14 0 chr1 183977845 183977990 -13217442 - B1_Mus1 SINE Alu -1 147 1 9 1988 446 229 0 0 chr1 183978002 183978085 -13217347 - MTC LTR MaLR -337 84 2 9 1988 834 221 177 10 chr1 183978565 183978757 -13216675 - ID_B1 SINE B4 0 224 1 9 1988 213 146 0 0 chr1 183978783 183978831 -13216601 + (T)n Simple_repeat Simple_repeat 1 48 0 9 1988 1173 47 0 39 chr1 183978831 183978985 -13216447 - B1_Mus1 SINE Alu 0 148 1 9 1988 260 183 16 62 chr1 183978987 183979051 -13216381 - PB1D10 SINE Alu -1 116 56 9 1988 323 316 38 93 chr1 183979225 183979538 -13215894 - MTEa LTR MaLR 0 379 69 9 1988 725 232 105 5 chr1 183979604 183979795 -13215637 - B3 SINE B2 -5 211 2 9 1988 288 0 0 0 chr1 183979885 183979917 -13215515 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1988 326 330 219 24 chr1 183980647 183980939 -13214493 - MLT2E LTR ERVL -118 510 162 9 1988 421 241 94 8 chr1 183980968 183981085 -13214347 + RSINE1 SINE B4 3 129 -36 9 1988 24 0 0 0 chr1 183981107 183981131 -13214301 + AT_rich Low_complexity Low_complexity 1 24 0 9 1988 1025 60 83 0 chr1 183981190 183981323 -13214109 + B1_Mus2 SINE Alu 3 146 -1 9 1988 250 263 13 26 chr1 183981805 183981883 -13213549 + ID4 SINE ID 4 80 -3 9 1988 594 275 43 43 chr1 183981975 183982184 -13213248 + ID_B1 SINE B4 1 209 -15 9 1988 606 140 0 0 chr1 183982186 183982286 -13213146 + (TAA)n Simple_repeat Simple_repeat 1 100 0 9 1988 1120 72 0 0 chr1 183982313 183982451 -13212981 + B1_Mus1 SINE Alu 1 138 -10 9 1988 406 0 0 36 chr1 183982451 183982507 -13212925 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1988 781 160 32 0 chr1 183983914 183984039 -13211393 + B1_Mus1 SINE Alu 2 130 -18 9 1988 659 71 10 0 chr1 183984101 183984199 -13211233 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 9 1988 708 191 58 7 chr1 183984225 183984362 -13211070 - B1_Mur2 SINE Alu -5 144 1 9 1988 740 91 9 0 chr1 183984370 183984480 -13210952 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 9 1988 546 327 66 7 chr1 183984497 183984648 -13210784 - RSINE1 SINE B4 -4 161 2 9 1988 540 244 14 64 chr1 183984652 183984792 -13210640 - ID_B1 SINE B4 0 224 92 9 1988 213 39 0 0 chr1 183984792 183984818 -13210614 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1988 754 97 0 0 chr1 183984819 183984922 -13210510 - B1_Mur3 SINE Alu -13 136 34 9 1988 266 250 37 12 chr1 183986049 183986130 -13209302 + ID4 SINE ID 1 83 0 1 1988 651 74 0 0 chr1 183986138 183986219 -13209213 + tRNA-Ser-AGY tRNA tRNA 1 81 -4 1 1988 1202 48 0 7 chr1 183986231 183986369 -13209063 + B1_Mus2 SINE Alu 2 139 -8 1 1988 316 0 45 0 chr1 183986369 183986413 -13209019 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1988 416 288 70 31 chr1 183986489 183986618 -13208814 - RSINE1 SINE B4 -21 144 11 1 1988 774 189 8 0 chr1 183986644 183986771 -13208661 + B1_Mur2 SINE Alu 2 129 -20 1 1988 400 239 23 0 chr1 183986814 183986902 -13208530 - ORR1D2 LTR MaLR -28 342 253 1 1988 349 206 45 45 chr1 183986898 183987010 -13208422 - ORR1D2 LTR MaLR -232 142 31 1 1988 414 0 0 0 chr1 183988860 183988906 -13206526 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1988 270 234 31 15 chr1 183989230 183989295 -13206137 + ID4_ SINE ID 15 80 -3 1 1988 563 262 50 0 chr1 183990004 183990145 -13205287 - RSINE1 SINE B4 -15 150 3 1 1988 665 264 22 27 chr1 183990194 183990377 -13205055 - B3A SINE B2 -16 182 1 1 1988 282 291 101 0 chr1 183990377 183990456 -13204976 - MLT1A1 LTR MaLR -321 87 1 1 1988 234 91 0 0 chr1 183990537 183990570 -13204862 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1988 254 143 20 0 chr1 183991304 183991353 -13204079 + GA-rich Low_complexity Low_complexity 3 52 0 1 1988 744 208 18 42 chr1 183991371 183991537 -13203895 + RSINE1 SINE B4 4 165 0 1 1988 504 53 40 0 chr1 183991889 183991964 -13203468 - B2_Mm2 SINE B2 -1 194 117 1 1988 1196 209 19 0 chr1 183992556 183992766 -13202666 + B3 SINE B2 2 215 -1 1 1988 252 258 21 43 chr1 183993158 183993251 -13202181 - MLT1A1 LTR MaLR -1 407 317 1 1988 1226 48 0 0 chr1 183993291 183993438 -13201994 + B1_Mus2 SINE Alu 1 147 0 1 1988 1149 69 14 0 chr1 183993462 183993607 -13201825 + B1_Mus1 SINE Alu 2 148 0 1 1988 485 270 18 0 chr1 183994463 183994574 -13200858 + ID_B1 SINE B4 108 220 -4 1 1988 238 227 189 25 chr1 183994577 183994699 -13200733 + B1F1 SINE Alu 1 142 -7 1 1988 243 236 0 18 chr1 183995124 183995180 -13200252 - ID4 SINE ID -15 68 14 1 1988 249 33 0 0 chr1 183995240 183995270 -13200162 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1988 596 261 137 11 chr1 183995342 183995532 -13199900 - B4A SINE B4 -78 214 1 1 1988 213 294 174 0 chr1 183996184 183996276 -13199156 + L2a LINE L2 3298 3405 -21 1 1988 579 324 105 81 chr1 183996322 183996338 -13199094 + Arthur1 DNA Tip100 62 77 -3870 1 1988 279 0 0 0 chr1 183996338 183996369 -13199063 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1988 579 324 105 81 chr1 183996369 183996571 -13198861 + Arthur1 DNA Tip100 78 308 -3639 1 1988 2739 136 34 34 chr1 183996571 183997044 -13198388 + Lx3B LINE L1 6500 6972 -1 1 1988 579 324 105 81 chr1 183997044 183997244 -13198188 + Arthur1 DNA Tip100 309 491 -3456 1 1988 349 222 47 47 chr1 183997560 183997645 -13197787 + AluG_3 SINE Alu 137 221 -90 1 1988 1046 51 21 35 chr1 183997682 183997823 -13197609 + B1_Mus1 SINE Alu 1 139 -9 1 1988 1038 187 32 32 chr1 183997869 183998085 -13197347 + B3 SINE B2 1 216 0 1 1988 543 299 12 19 chr1 183998647 183998807 -13196625 - ID_B1 SINE B4 -4 220 62 1 1988 298 250 160 25 chr1 183998783 183998902 -13196530 - B4A SINE B4 -127 165 31 1 1988 490 196 86 14 chr1 183998915 183999055 -13196377 - L1MB7 LINE L1 -56 6128 5979 1 1988 235 260 102 28 chr1 183999069 183999173 -13196259 - ID4_ SINE ID -48 104 1 1 1988 372 286 57 7 chr1 183999173 183999314 -13196118 - L1MB7 LINE L1 -190 5994 5847 1 1988 299 263 98 87 chr1 183999327 183999388 -13196044 - L1MB7 LINE L1 -562 5616 5538 1 1988 730 195 136 5 chr1 183999388 183999579 -13195853 - B3 SINE B2 0 216 1 1 1988 299 263 98 87 chr1 183999579 183999700 -13195732 - L1MB7 LINE L1 -641 5537 5432 1 1988 268 289 10 72 chr1 183999865 183999962 -13195470 - L2a LINE L2 -31 3395 3305 1 1988 743 292 20 0 chr1 184000003 184000198 -13195234 - B3 SINE B2 -17 199 1 1 1988 847 331 107 37 chr1 184000390 184000472 -13194960 + LTR16A LTR ERVL 33 121 -330 2 1988 1532 136 0 5 chr1 184000472 184000694 -13194738 - URR1B DNA MER1_type 0 225 5 3 1988 847 331 107 37 chr1 184000694 184000994 -13194438 + LTR16A LTR ERVL 122 442 -9 2 1988 712 351 45 14 chr1 184000999 184001441 -13193991 + HERV16-int LTR ERVL 4 459 -4537 2 1988 297 263 137 0 chr1 184002638 184002733 -13192699 + HERV16-int LTR ERVL 573 680 -4316 2 1988 408 266 32 0 chr1 184003032 184003156 -13192276 + HERV16-int LTR ERVL 1052 1179 -3817 2 1988 320 290 62 0 chr1 184003572 184003717 -13191715 + HERV16-int LTR ERVL 1731 1884 -3112 2 1988 303 28 0 0 chr1 184003727 184003763 -13191669 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1988 553 299 20 0 chr1 184003945 184004092 -13191340 + RSINE1 SINE B4 2 151 -14 5 1988 226 277 15 0 chr1 184004109 184004174 -13191258 + (CACG)n Simple_repeat Simple_repeat 4 69 0 6 1988 263 280 98 20 chr1 184004334 184004436 -13190996 + HERV16-int LTR ERVL 2317 2426 -2570 2 1988 316 284 29 29 chr1 184004681 184004786 -13190646 + HERV16-int LTR ERVL 2730 2834 -2162 2 1988 410 253 11 0 chr1 184004808 184004899 -13190533 + B3A SINE B2 7 98 -100 7 1988 920 152 214 0 chr1 184004943 184005121 -13190311 + B3 SINE B2 1 216 0 8 1988 1659 31 0 0 chr1 184005125 184005317 -13190115 + B2_Mm1a SINE B2 1 192 -1 9 1988 461 385 51 22 chr1 184005360 184005870 -13189562 + HERV16-int LTR ERVL 2966 3490 -2271 2 1988 1243 48 0 0 chr1 184006396 184006542 -13188890 + B1_Mus2 SINE Alu 2 147 0 1 1988 207 0 0 0 chr1 184006542 184006565 -13188867 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1988 421 254 127 0 chr1 184006665 184006799 -13188633 + HERV16-int LTR ERVL 4236 4386 -1375 2 1988 273 119 0 0 chr1 184006928 184006970 -13188462 + (TCC)n Simple_repeat Simple_repeat 3 44 0 1 1988 1416 94 5 0 chr1 184006972 184007163 -13188269 - B2_Mm1a SINE B2 -1 192 1 1 1988 620 178 96 7 chr1 184007191 184007327 -13188105 - B1_Mur2 SINE Alu 0 149 2 1 1988 1113 226 143 99 chr1 184007335 184007505 -13187927 - MTD LTR MaLR -39 380 210 1 1988 914 162 0 26 chr1 184007505 184007657 -13187775 - B1_Mur1 SINE Alu 0 149 2 1 1988 1113 226 143 99 chr1 184007657 184007850 -13187582 - MTD LTR MaLR -210 209 1 1 1988 1497 73 16 0 chr1 184008048 184008239 -13187193 + B2_Mm2 SINE B2 2 195 0 1 1988 289 370 24 24 chr1 184008244 184008410 -13187022 + HERV16-int LTR ERVL 4862 5027 -734 2 1988 280 269 86 23 chr1 184008483 184008597 -13186835 - ORR1E LTR MaLR -18 361 256 1 1988 1944 147 107 14 chr1 184008595 184008941 -13186491 - ORR1C2 LTR MaLR -6 378 1 1 1988 321 277 174 41 chr1 184010058 184010254 -13185178 - L2 LINE L2 -340 3079 2858 2 1988 269 271 272 98 chr1 184010282 184010332 -13185100 + B4A SINE B4 3 106 -186 2 1988 293 262 19 28 chr1 184010332 184010443 -13184989 + B1F2 SINE Alu 10 120 0 2 1988 269 271 272 98 chr1 184010443 184010529 -13184903 + B4A SINE B4 107 292 0 2 1988 376 354 21 62 chr1 184010613 184010854 -13184578 - L2 LINE L2 -640 2779 2549 2 1988 248 312 12 0 chr1 184010911 184010991 -13184441 - ID4_ SINE ID -2 81 1 2 1988 682 267 30 35 chr1 184011033 184011231 -13184201 + B3A SINE B2 2 198 0 2 1988 1122 44 0 0 chr1 184011271 184011407 -13184025 - B1_Mm SINE Alu -1 146 11 2 1988 297 225 41 27 chr1 184011380 184011453 -13183979 - B3 SINE B2 -142 74 1 2 1988 263 291 128 98 chr1 184011460 184011787 -13183645 - L2 LINE L2 -993 2426 2090 2 1988 790 177 28 0 chr1 184011798 184011939 -13183493 + B1_Mur4 SINE Alu 6 150 0 2 1988 24 0 0 0 chr1 184012938 184012962 -13182470 + AT_rich Low_complexity Low_complexity 1 24 0 2 1988 1672 26 5 0 chr1 184012992 184013184 -13182248 - B2_Mm1t SINE B2 0 193 1 2 1988 989 70 225 19 chr1 184013256 184013416 -13182016 - B2_Mm2 SINE B2 -1 194 2 3 1988 530 232 38 1 chr1 184013419 184013539 -13181893 - B1F2 SINE Alu -2 147 25 3 1988 1478 37 15 69 chr1 184013926 184014118 -13181314 + B2_Mm1a SINE B2 1 182 -11 3 1988 188 0 74 0 chr1 184014118 184014145 -13181287 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1988 1478 37 15 69 chr1 184014145 184014156 -13181276 + B2_Mm1a SINE B2 183 193 0 3 1988 223 197 61 76 chr1 184014193 184014259 -13181173 + PB1D10 SINE Alu 33 97 -20 3 1988 540 111 0 29 chr1 184014260 184014362 -13181070 + (GGGAGA)n Simple_repeat Simple_repeat 2 100 0 3 1988 295 286 26 0 chr1 184014414 184014491 -13180941 - ID4 SINE ID -2 81 3 3 1988 239 231 23 0 chr1 184015031 184015092 -13180340 + PB1D7 SINE Alu 53 119 -1 3 1988 932 112 0 22 chr1 184015131 184015268 -13180164 + B1_Mus1 SINE Alu 2 135 -13 3 1988 243 0 0 0 chr1 184015269 184015296 -13180136 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1988 350 280 80 53 chr1 184015807 184015920 -13179512 + PB1D10 SINE Alu 1 116 -1 4 1988 294 270 0 0 chr1 184016033 184016096 -13179336 + L2c LINE L2 3305 3367 -20 4 1988 926 73 138 0 chr1 184016163 184016286 -13179146 + B1_Mus1 SINE Alu 3 142 -6 4 1988 396 182 26 13 chr1 184017716 184017794 -13177638 + ID4 SINE ID 4 82 -1 4 1988 548 95 12 0 chr1 184017823 184017907 -13177525 + (TCC)n Simple_repeat Simple_repeat 3 87 0 4 1988 997 80 51 0 chr1 184017908 184018046 -13177386 - B1_Mur4 SINE Alu -5 145 1 4 1988 278 283 53 21 chr1 184018096 184018190 -13177242 - Charlie15a DNA MER1_type -24 200 104 4 1988 246 256 22 104 chr1 184020405 184020540 -13174892 - MIRb SINE MIR -34 234 111 4 1988 308 155 14 0 chr1 184021271 184021342 -13174090 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1988 267 270 14 0 chr1 184021608 184021682 -13173750 + MLT1J LTR MaLR 236 310 -202 4 1988 802 190 42 0 chr1 184021826 184021968 -13173464 - B1_Mur2 SINE Alu 0 149 2 5 1988 1300 96 11 0 chr1 184022895 184023072 -13172360 + B2_Mm1t SINE B2 1 179 -14 5 1988 305 163 0 0 chr1 184023104 184023153 -13172279 + B2_Mm2 SINE B2 47 95 -100 5 1988 366 253 50 50 chr1 184023286 184023386 -13172046 - PB1D10 SINE Alu -17 100 1 5 1988 1084 95 0 13 chr1 184023415 184023564 -13171868 - B1_Mus1 SINE Alu -1 147 1 5 1989 226 163 23 0 chr1 184025571 184025614 -13169818 + CT-rich Low_complexity Low_complexity 1 44 0 5 1989 369 0 0 0 chr1 184025921 184025962 -13169470 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1989 293 253 0 81 chr1 184025975 184026061 -13169371 - B4A SINE B4 0 292 214 5 1989 615 272 81 9 chr1 184026050 184026244 -13169188 - B3A SINE B2 -1 215 15 5 1989 1124 114 6 0 chr1 184026265 184026441 -13168991 + (TCC)n Simple_repeat Simple_repeat 3 179 0 5 1989 640 247 87 31 chr1 184026441 184026637 -13168795 - B4 SINE B4 -79 213 7 5 1989 508 239 74 7 chr1 184027171 184027306 -13168126 + B1_Mur1 SINE Alu 1 144 -5 6 1989 323 118 26 26 chr1 184027307 184027385 -13168047 + GA-rich Low_complexity Low_complexity 2 79 0 6 1989 447 19 0 0 chr1 184027613 184027665 -13167767 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1989 794 254 122 103 chr1 184027683 184027726 -13167706 - B4A SINE B4 -20 272 226 6 1989 417 95 0 0 chr1 184027726 184027789 -13167643 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 6 1989 794 254 122 103 chr1 184027789 184027949 -13167483 - B4A SINE B4 -67 225 57 6 1989 1259 91 28 6 chr1 184027949 184028126 -13167306 - B2_Mm2 SINE B2 -14 181 1 6 1989 794 254 122 103 chr1 184028126 184028184 -13167248 - B4A SINE B4 -236 56 6 6 1989 321 47 0 0 chr1 184028221 184028264 -13167168 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1989 1245 41 0 0 chr1 184028264 184028402 -13167030 - B1_Mus1 SINE Alu -8 140 3 6 1989 261 309 120 40 chr1 184028625 184028800 -13166632 + MIRb SINE MIR 66 254 -14 6 1989 453 36 0 0 chr1 184029901 184029957 -13165475 - ORR1A4 LTR MaLR 0 329 274 6 1989 1034 68 0 0 chr1 184029986 184030118 -13165314 - B1_Mus1 SINE Alu -10 138 7 7 1989 647 141 89 16 chr1 184030083 184030206 -13165226 - RMER17D LTR ERVK -757 132 1 7 1989 1364 148 99 0 chr1 184030206 184030445 -13164987 - ORR1B1 LTR MaLR -131 263 1 7 1989 497 312 55 14 chr1 184031130 184031276 -13164156 + RSINE1 SINE B4 14 165 0 7 1989 474 227 52 0 chr1 184031283 184031380 -13164052 + B3A SINE B2 4 105 -93 7 1989 267 31 0 0 chr1 184031393 184031425 -13164007 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 1989 1404 92 5 0 chr1 184031451 184031635 -13163797 + B2_Mm1a SINE B2 2 186 -7 7 1989 205 323 0 15 chr1 184032344 184032410 -13163022 + L2b LINE L2 3286 3350 -25 7 1989 193 146 48 24 chr1 184032482 184032524 -13162908 + MIR SINE MIR 94 136 -126 7 1989 1395 35 0 6 chr1 184033257 184033271 -13162161 - B2_Mm1a SINE B2 -19 174 161 7 1989 186 43 0 0 chr1 184033271 184033294 -13162138 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1989 1395 35 0 6 chr1 184033294 184033453 -13161979 - B2_Mm1a SINE B2 -33 160 2 7 1989 693 246 126 21 chr1 184034241 184034432 -13161000 - ID_B1 SINE B4 -2 222 12 8 1989 545 169 242 17 chr1 184034552 184034672 -13160760 + B1_Mus1 SINE Alu 1 147 -1 8 1989 520 217 8 42 chr1 184034833 184034953 -13160479 - PB1D10 SINE Alu -1 116 1 8 1989 305 254 198 0 chr1 184035873 184035999 -13159433 - RSINE1 SINE B4 -14 151 1 8 1989 349 232 20 59 chr1 184036005 184036106 -13159326 - B1F2 SINE Alu -7 142 46 8 1989 963 91 201 0 chr1 184036314 184036468 -13158964 + B2_Mm2 SINE B2 1 185 -10 8 1989 353 254 0 0 chr1 184036513 184036580 -13158852 + ID4_ SINE ID 3 69 -14 8 1989 257 297 84 23 chr1 184036591 184036647 -13158785 - ID_B1 SINE B4 -78 146 8 8 1989 322 230 27 13 chr1 184036647 184036722 -13158710 - ID4 SINE ID 0 83 8 8 1989 324 251 58 55 chr1 184036811 184036929 -13158503 + B1F SINE Alu 3 127 0 9 1989 510 170 0 0 chr1 184037052 184037146 -13158286 + T-rich Low_complexity Low_complexity 1 94 0 9 1989 186 128 0 0 chr1 184037264 184037303 -13158129 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1989 242 200 0 0 chr1 184037846 184037896 -13157536 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1989 216 205 0 0 chr1 184038492 184038531 -13156901 + (TTAGGC)n Simple_repeat Simple_repeat 4 42 0 9 1989 340 299 103 73 chr1 184039688 184039922 -13155510 - MIR SINE MIR -27 241 1 9 1989 222 374 75 0 chr1 184039954 184040061 -13155371 + L2b LINE L2 3260 3374 -1 9 1989 273 280 40 0 chr1 184040114 184040189 -13155243 + ID2 SINE ID 2 79 -4 9 1989 463 314 38 25 chr1 184040411 184040568 -13154864 + ID_B1 SINE B4 6 164 -60 9 1989 227 296 41 27 chr1 184040522 184040595 -13154837 + PB1D10 SINE Alu 38 111 -6 9 1989 574 311 6 12 chr1 184041281 184041444 -13153988 + RSINE1 SINE B4 4 165 0 1 1989 1237 48 0 0 chr1 184042851 184042997 -13152435 + B1_Mus2 SINE Alu 2 147 0 1 1989 264 204 0 0 chr1 184045196 184045240 -13150192 + B1F SINE Alu 28 71 -78 1 1989 190 94 62 0 chr1 184046217 184046249 -13149183 + MIRm SINE MIR 233 266 -10 1 1989 1215 221 89 50 chr1 184046607 184046657 -13148775 - MTE2b LTR MaLR -4 375 326 1 1989 549 0 0 0 chr1 184046657 184046718 -13148714 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 1 1989 1215 221 89 50 chr1 184046718 184046858 -13148574 - MTE2b LTR MaLR -54 325 183 1 1989 749 182 0 86 chr1 184046858 184047020 -13148412 - B1_Mur2 SINE Alu -1 148 1 1 1989 1215 221 89 50 chr1 184047020 184047186 -13148246 - MTE2b LTR MaLR -197 182 6 1 1989 1625 37 0 5 chr1 184047227 184047418 -13148014 + B2_Mm2 SINE B2 1 190 -5 1 1989 981 150 87 0 chr1 184047558 184047731 -13147701 - B2_Mm2 SINE B2 -4 191 4 1 1989 2356 170 67 16 chr1 184048152 184048601 -13146831 - RMER16 LTR ERVK 0 533 62 1 1989 1068 71 14 14 chr1 184048860 184049002 -13146430 + B1_Mus2 SINE Alu 4 145 -2 1 1989 1479 226 72 25 chr1 184049159 184049518 -13145914 + MTEb LTR MaLR 1 376 -3 1 1989 1899 204 157 23 chr1 184049707 184049824 -13145608 + RLTR20A LTR ERVK 1 118 -423 1 1989 1165 45 0 0 chr1 184049824 184049958 -13145474 + B1_Mm SINE Alu 5 138 -9 1 1989 189 0 0 0 chr1 184049958 184049979 -13145453 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1989 1899 204 157 23 chr1 184049979 184050295 -13145137 + RLTR20A LTR ERVK 119 473 -68 1 1989 261 0 0 0 chr1 184050295 184050324 -13145108 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1989 1899 204 157 23 chr1 184050324 184050365 -13145067 + RLTR20A LTR ERVK 474 539 -2 1 1989 1070 246 149 0 chr1 184051853 184052154 -13143278 - MTEa LTR MaLR 0 379 34 1 1989 182 128 0 25 chr1 184052847 184052887 -13142545 + CT-rich Low_complexity Low_complexity 2 40 0 1 1989 1308 36 127 0 chr1 184052904 184053070 -13142362 + B2_Mm1a SINE B2 1 187 -6 1 1989 315 0 0 0 chr1 184053118 184053153 -13142279 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1989 1064 118 0 0 chr1 184053154 184053307 -13142125 - B2_Mm2 SINE B2 -41 154 2 1 1989 513 179 30 30 chr1 184053380 184053519 -13141913 + GA-rich Low_complexity Low_complexity 2 142 0 1 1989 1165 50 0 0 chr1 184053519 184053658 -13141774 + B1_Mus1 SINE Alu 1 139 -9 1 1989 243 0 0 0 chr1 184053658 184053685 -13141747 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1989 513 179 30 30 chr1 184053685 184053711 -13141721 + polypurine Low_complexity Low_complexity 143 167 0 1 1989 216 67 0 0 chr1 184053808 184053838 -13141594 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1989 774 47 9 36 chr1 184053870 184053980 -13141452 + B2_Mm2 SINE B2 1 107 -88 1 1989 213 39 0 0 chr1 184053993 184054019 -13141413 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1989 239 302 22 34 chr1 184054127 184054216 -13141216 + L1ME1 LINE L1 5981 6068 -111 1 1989 268 295 10 40 chr1 184055886 184055985 -13139447 + RSINE1 SINE B4 70 165 0 1 1989 526 230 29 14 chr1 184056154 184056314 -13139118 - B3 SINE B2 -12 186 34 1 1989 524 43 0 0 chr1 184056475 184056545 -13138887 - B1_Mus2 SINE Alu -77 70 1 1 1989 775 80 148 23 chr1 184058646 184058774 -13136658 - B1_Mus1 SINE Alu 0 148 5 1 1989 360 174 53 42 chr1 184059164 184059282 -13136150 - B1_Mus2 SINE Alu -1 146 1 1 1989 1565 174 33 57 chr1 184059543 184059963 -13135469 - RMER17C LTR ERVK 0 410 1 1 1989 2020 74 70 0 chr1 184060233 184060531 -13134901 - ORR1A2 LTR MaLR -8 319 1 1 1989 252 0 0 0 chr1 184060623 184060651 -13134781 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1989 324 0 0 0 chr1 184060651 184060686 -13134746 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1989 504 0 0 0 chr1 184060813 184060876 -13134556 + L1Md_A LINE L1 6520 6582 0 1 1989 319 225 37 12 chr1 184060998 184061079 -13134353 - ID_B1 SINE B4 -1 223 141 1 1989 460 209 61 0 chr1 184061085 184061200 -13134232 - B3 SINE B2 -6 210 89 1 1989 21 0 0 0 chr1 184061820 184061841 -13133591 + AT_rich Low_complexity Low_complexity 1 21 0 1 1989 694 172 52 7 chr1 184062570 184062705 -13132727 - B1_Mur2 SINE Alu -6 143 3 1 1989 25 65 0 0 chr1 184063193 184063239 -13132193 + AT_rich Low_complexity Low_complexity 1 46 0 1 1989 291 217 0 0 chr1 184063240 184063300 -13132132 + PB1D10 SINE Alu 33 92 -25 1 1989 3158 42 5 0 chr1 184063335 184063714 -13131718 + L1Md_T LINE L1 6201 6581 -1 1 1989 1150 98 0 0 chr1 184063723 184063887 -13131545 + B2_Mm2 SINE B2 1 164 -31 1 1989 303 28 0 0 chr1 184063887 184063923 -13131509 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1 1989 295 91 349 0 chr1 184063928 184063994 -13131438 + BC1_Mm scRNA scRNA 1 89 -63 1 1989 317 152 304 0 chr1 184064382 184064461 -13130971 + MIR SINE MIR 134 236 -26 1 1989 221 57 0 28 chr1 184064811 184064847 -13130585 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1989 485 280 8 0 chr1 184064868 184064986 -13130446 - RSINE1 SINE B4 -39 126 8 1 1989 243 266 222 39 chr1 184065045 184065225 -13130207 - MLT1D LTR MaLR -292 213 1 1 1989 252 298 149 0 chr1 184065265 184065359 -13130073 - MER2 DNA MER2_type 0 345 238 1 1989 534 289 51 13 chr1 184065737 184065895 -13129537 - RSINE1 SINE B4 0 165 2 1 1989 256 240 125 39 chr1 184066632 184066736 -13128696 + L2c LINE L2 3275 3387 0 1 1989 274 333 91 0 chr1 184066798 184066897 -13128535 + RSINE1 SINE B4 1 108 -57 1 1989 261 180 0 0 chr1 184066986 184067036 -13128396 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1989 240 167 0 0 chr1 184067420 184067468 -13127964 + (CGG)n Simple_repeat Simple_repeat 2 49 0 1 1989 402 242 7 82 chr1 184068452 184068587 -13126845 + B3A SINE B2 73 197 -1 1 1989 1241 27 0 26 chr1 184068606 184068757 -13126675 - B1_Mus2 SINE Alu 0 147 1 1 1989 859 218 30 15 chr1 184068791 184068991 -13126441 + B3 SINE B2 5 207 -9 1 1989 252 0 0 0 chr1 184069124 184069152 -13126280 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1989 284 234 195 18 chr1 184071715 184071828 -13123604 + MLT1G LTR MaLR 205 337 -254 1 1989 267 103 0 0 chr1 184072418 184072457 -13122975 + (TCG)n Simple_repeat Simple_repeat 2 40 0 1 1989 200 188 0 0 chr1 184072463 184072495 -13122937 + (CCA)n Simple_repeat Simple_repeat 1 32 0 1 1989 27 0 0 0 chr1 184072534 184072561 -13122871 + AT_rich Low_complexity Low_complexity 1 27 0 1 1989 254 247 47 12 chr1 184072856 184072942 -13122490 + PB1D7 SINE Alu 32 120 0 1 1989 1186 68 0 0 chr1 184074456 184074604 -13120828 - B1_Mus1 SINE Alu 0 148 1 1 1989 255 213 0 0 chr1 184075463 184075538 -13119894 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1989 789 161 0 0 chr1 184075549 184075717 -13119715 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1989 677 141 61 30 chr1 184075808 184075940 -13119492 - B1_Mur4 SINE Alu -11 139 4 1 1989 4506 70 7 30 chr1 184075973 184076574 -13118858 + LTRIS_Mus LTR ERV1 1 587 0 1 1989 1152 41 0 75 chr1 184076832 184076991 -13118441 + B1_Mm SINE Alu 1 147 0 1 1989 222 37 0 0 chr1 184076991 184077018 -13118414 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1989 291 28 0 0 chr1 184077451 184077487 -13117945 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 1 1989 766 249 91 150 chr1 184077524 184077675 -13117757 + MTD LTR MaLR 7 146 -273 1 1989 4355 34 4 2 chr1 184077675 184078177 -13117255 - RLTR1C LTR ERV1 0 503 1 1 1989 766 249 91 150 chr1 184078177 184078464 -13116968 + MTD LTR MaLR 147 419 0 1 1989 186 50 49 24 chr1 184078691 184078732 -13116700 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1989 753 138 19 65 chr1 184078746 184078901 -13116531 + B1_Mur4 SINE Alu 1 148 -2 1 1989 28 29 0 0 chr1 184078913 184078948 -13116484 + AT_rich Low_complexity Low_complexity 1 35 0 1 1989 234 299 0 0 chr1 184079750 184079817 -13115615 + ID4 SINE ID 14 80 -3 1 1989 1188 48 7 0 chr1 184079987 184080132 -13115300 + B1_Mus2 SINE Alu 1 146 -1 1 1989 1030 212 19 5 chr1 184080205 184080418 -13115014 - B3 SINE B2 0 216 1 1 1989 207 0 0 0 chr1 184080533 184080556 -13114876 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1989 516 305 52 113 chr1 184080560 184080611 -13114821 - B4A SINE B4 -23 269 221 1 1989 1056 108 0 0 chr1 184080611 184080759 -13114673 - B1_Mus1 SINE Alu 0 148 1 1 1989 516 305 52 113 chr1 184080759 184080936 -13114496 - B4A SINE B4 -72 220 55 1 1989 586 264 18 24 chr1 184080908 184081075 -13114357 - B4 SINE B4 -16 276 111 1 1989 197 266 11 0 chr1 184081091 184081185 -13114247 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1989 1044 146 0 0 chr1 184081304 184081482 -13113950 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 1 1989 1488 57 0 0 chr1 184081504 184081697 -13113735 - L1Md_F2 LINE L1 -1 6581 6389 1 1989 3516 149 14 7 chr1 184081699 184082292 -13113140 - Lx LINE L1 -12 6642 6046 1 1989 493 245 0 10 chr1 184082351 184082454 -13112978 - B4A SINE B4 -61 231 130 1 1989 1383 175 174 91 chr1 184082475 184082928 -13112504 + MT2A LTR ERVL 1 491 -42 1 1989 525 237 8 17 chr1 184083012 184083132 -13112300 - B4A SINE B4 -173 119 1 1 1989 242 269 110 15 chr1 184083193 184083329 -13112103 - L1MD3 LINE L1 -896 7099 6951 1 1989 1078 90 7 0 chr1 184083378 184083522 -13111910 - B1_Mus2 SINE Alu -1 146 2 1 1989 1340 67 96 0 chr1 184083545 184083563 -13111869 - B2_Mm2 SINE B2 0 195 178 1 1989 261 0 0 0 chr1 184083563 184083592 -13111840 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1989 1340 67 96 0 chr1 184083592 184083751 -13111681 - B2_Mm2 SINE B2 -18 177 2 1 1989 235 231 114 20 chr1 184083752 184083882 -13111550 - L1MD3 LINE L1 -1068 6927 6760 1 1989 436 300 0 65 chr1 184083946 184084085 -13111347 + RSINE1 SINE B4 29 158 -7 1 1989 345 82 0 0 chr1 184084099 184084148 -13111284 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1989 299 282 58 0 chr1 184084179 184084282 -13111150 - L1MA6 LINE L1 -1 6299 6191 1 1989 2864 221 74 104 chr1 184084310 184084369 -13111063 - RLTR13D2 LTR ERVK 0 1114 1055 2 1989 3597 38 28 5 chr1 184084369 184084795 -13110637 - RLTR10C LTR ERVK 0 436 1 2 1989 2864 221 74 104 chr1 184084795 184085167 -13110265 - RLTR13D2 LTR ERVK -60 1054 680 2 1989 180 0 0 0 chr1 184085167 184085187 -13110245 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1989 3146 112 174 68 chr1 184085187 184085902 -13109530 - RLTR13D2 LTR ERVK -235 788 1 2 1989 759 264 142 14 chr1 184085909 184086262 -13109170 - L1M3 LINE L1 -1093 5047 4650 2 1989 344 255 20 7 chr1 184086432 184086578 -13108854 + CT-rich Low_complexity Low_complexity 1 148 0 2 1989 347 146 159 18 chr1 184086579 184086696 -13108736 - B2_Mm2 SINE B2 -1 194 46 2 1989 698 134 162 0 chr1 184086742 184086884 -13108548 - B2_Mm1t SINE B2 -14 179 15 2 1989 630 147 64 0 chr1 184088392 184088549 -13106883 + CT-rich Low_complexity Low_complexity 4 170 0 2 1989 261 0 0 0 chr1 184088679 184088708 -13106724 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1989 618 256 58 76 chr1 184088756 184088980 -13106452 - ID_B1 SINE B4 -4 220 1 2 1989 2545 88 11 24 chr1 184089807 184090180 -13105252 + RLTR9A LTR ERVK 1 368 0 2 1989 400 286 118 51 chr1 184090227 184090422 -13105010 - B3A SINE B2 -1 215 8 2 1989 1752 212 19 35 chr1 184090703 184091220 -13104212 - Lx7 LINE L1 0 7696 7074 2 1989 1354 57 34 6 chr1 184091308 184091483 -13103949 + B2_Mm2 SINE B2 1 180 -15 2 1989 570 29 0 0 chr1 184091483 184091551 -13103881 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 2 1989 700 214 15 65 chr1 184091973 184092173 -13103259 + B3 SINE B2 2 191 -25 2 1989 24 0 0 0 chr1 184093819 184093843 -13101589 + AT_rich Low_complexity Low_complexity 1 24 0 2 1989 768 185 13 46 chr1 184095678 184095831 -13099601 + B1_Mur1 SINE Alu 1 148 -1 2 1989 959 269 97 24 chr1 184095951 184096290 -13099142 + MTEa LTR MaLR 3 366 -13 2 1989 216 0 0 0 chr1 184096290 184096314 -13099118 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1989 874 42 83 0 chr1 184096314 184096434 -13098998 - B1_Mm SINE Alu -9 138 9 2 1989 1181 287 86 9 chr1 184096582 184096920 -13098512 + MTE2b LTR MaLR 10 373 -6 2 1989 1299 40 17 0 chr1 184097121 184097295 -13098137 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 1989 903 139 17 11 chr1 184097302 184097477 -13097955 + CT-rich Low_complexity Low_complexity 3 178 0 2 1989 480 35 0 0 chr1 184097494 184097552 -13097880 + (TCC)n Simple_repeat Simple_repeat 3 60 0 2 1989 837 211 0 0 chr1 184097562 184097704 -13097728 - B1_Mur3 SINE Alu -7 142 1 2 1989 423 280 60 66 chr1 184097786 184098103 -13097329 - L1MC LINE L1 -2465 3681 3367 2 1989 1026 46 0 0 chr1 184098115 184098246 -13097186 + B1_Mus1 SINE Alu 18 148 0 2 1989 393 171 0 0 chr1 184098246 184098334 -13097098 + A-rich Low_complexity Low_complexity 1 88 0 2 1989 701 261 77 94 chr1 184098378 184098655 -13096777 - L1MC LINE L1 -2932 3214 2913 2 1989 1333 88 5 35 chr1 184098655 184098855 -13096577 - B2_Mm2 SINE B2 0 195 2 2 1989 701 261 77 94 chr1 184098855 184099229 -13096203 - L1MC LINE L1 -3234 2912 2574 2 1989 466 344 111 25 chr1 184099346 184099862 -13095570 + L1MCb LINE L1 399 958 -5087 2 1989 2467 144 46 80 chr1 184100291 184100790 -13094642 - RLTR45 LTR ERVK 0 482 1 2 1989 919 221 29 84 chr1 184101000 184101311 -13094121 + MT2B LTR ERVL 302 595 -6 2 1989 904 321 82 0 chr1 184101351 184101656 -13093776 + RMER15-int LTR ERVL 1214 1543 -3456 2 1989 378 0 0 0 chr1 184101667 184101709 -13093723 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1989 1236 242 85 6 chr1 184101747 184102113 -13093319 + L1_Mur3 LINE L1 543 937 -6791 2 1989 1144 165 195 0 chr1 184102131 184102367 -13093065 + L1_Mur3 LINE L1 2095 2376 -3504 2 1989 12908 59 2 7 chr1 184102371 184103221 -13092211 - L1_Mm LINE L1 -306 5577 4738 2 1989 222 62 0 0 chr1 184103221 184103253 -13092179 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1989 12908 59 2 7 chr1 184103253 184104035 -13091397 - L1_Mm LINE L1 -1146 4737 3953 2 1989 2448 84 8 3 chr1 184104035 184104389 -13091043 + IAPEY2_LTR LTR ERVK 1 434 -2 2 1989 792 145 51 38 chr1 184104390 184104548 -13090884 + IAPLTR4_I LTR ERVK 21 180 -1290 2 1989 9748 121 3 25 chr1 184104548 184106044 -13089388 + IAPEy-int LTR ERVK 550 2012 -5501 2 1989 3599 63 11 0 chr1 184106021 184106468 -13088964 + IAPEy-int LTR ERVK 2238 2689 -4991 2 1989 491 51 0 0 chr1 184106461 184106520 -13088912 + IAPEy-int LTR ERVK 4852 4910 -2770 2 1989 4370 107 5 7 chr1 184106520 184107139 -13088293 + IAPEy-int LTR ERVK 6896 7513 0 2 1989 2839 36 62 0 chr1 184107139 184107475 -13087957 + IAPEY2_LTR LTR ERVK 1 357 0 2 1989 14118 77 0 3 chr1 184107475 184109356 -13086076 - L1_Mm LINE L1 -1926 3957 2083 2 1989 10466 184 58 39 chr1 184109364 184111961 -13083471 + RMER16-int LTR ERVK 1653 4176 -1230 2 1989 971 215 32 20 chr1 184111966 184112340 -13083092 + IAPEy-int LTR ERVK 6096 6422 -984 2 1989 409 72 68 68 chr1 184112555 184112629 -13082803 + IAPEy-int LTR ERVK 7331 7404 -2 2 1989 2443 104 92 15 chr1 184112630 184113020 -13082412 + RLTR9B2 LTR ERVK 1 420 0 2 1989 4169 150 278 12 chr1 184113020 184113744 -13081688 + L1_Mur3 LINE L1 3983 4747 -1133 2 1989 357 43 0 0 chr1 184113744 184113791 -13081641 + (CAG)n Simple_repeat Simple_repeat 1 47 0 2 1989 4169 150 278 12 chr1 184113791 184114104 -13081328 + L1_Mur3 LINE L1 4748 5297 -583 2 1989 759 193 7 0 chr1 184114193 184114333 -13081099 + B1_Mur4 SINE Alu 9 149 -1 2 1989 2355 86 29 0 chr1 184114359 184114674 -13080758 + ORR1A2 LTR MaLR 4 327 0 2 1989 2445 210 102 4 chr1 184114674 184115191 -13080241 + Lx7 LINE L1 6150 6717 -979 2 1989 653 213 52 23 chr1 184115178 184115351 -13080081 + Lx7 LINE L1 7238 7415 -281 2 1989 309 26 0 0 chr1 184115351 184115389 -13080043 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1989 3519 68 32 8 chr1 184115419 184115890 -13079542 - RLTR45 LTR ERVK 0 482 1 2 1989 416 62 0 15 chr1 184115910 184115975 -13079457 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 2 1989 395 112 6 0 chr1 184115990 184116059 -13079373 - B2_Mm2 SINE B2 -82 116 46 2 1989 1293 96 23 0 chr1 184116101 184116278 -13079154 - B2_Mm2 SINE B2 -14 181 1 2 1989 279 261 80 29 chr1 184116296 184116434 -13078998 + Lx7 LINE L1 7535 7679 -17 2 1989 477 0 0 0 chr1 184116437 184116490 -13078942 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 2 1989 948 178 0 0 chr1 184116506 184116686 -13078746 + CT-rich Low_complexity Low_complexity 1 180 0 2 1989 207 304 0 0 chr1 184116676 184116755 -13078677 + C-rich Low_complexity Low_complexity 4 82 0 2 1989 453 36 0 0 chr1 184116752 184116807 -13078625 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 2 1989 207 139 0 0 chr1 184117174 184117210 -13078222 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1989 2273 136 189 0 chr1 184117545 184117920 -13077512 + RLTR41 LTR ERV1 1 446 0 2 1989 260 293 11 58 chr1 184118105 184118192 -13077240 - ID4 SINE ID 0 83 1 2 1989 575 252 0 0 chr1 184118593 184118720 -13076712 + ID_B1 SINE B4 83 209 -15 2 1989 1956 125 9 30 chr1 184118728 184119057 -13076375 - RLTRETN_Mm LTR ERVK 0 322 1 2 1989 410 65 16 0 chr1 184119166 184119228 -13076204 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2 1989 645 196 30 0 chr1 184119262 184119395 -13076037 - B2_Mm2 SINE B2 -55 140 4 2 1989 353 232 110 0 chr1 184119411 184119493 -13075939 - 4.5SRNA scRNA scRNA -3 91 1 2 1989 344 320 85 6 chr1 184120140 184120316 -13075116 - MER90 LTR ERV1 -178 397 208 2 1989 317 300 79 10 chr1 184120305 184120406 -13075026 - RSINE1 SINE B4 -27 138 31 2 1989 410 146 10 0 chr1 184120502 184120598 -13074834 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1989 332 259 61 60 chr1 184120598 184120824 -13074608 + L1M2 LINE L1 4787 5026 -1120 2 1989 1274 129 0 20 chr1 184120828 184121026 -13074406 + B2_Mm2 SINE B2 2 195 0 2 1989 349 177 51 0 chr1 184121102 184121181 -13074251 + B1_Mur2 SINE Alu 34 116 -33 2 1989 601 326 36 10 chr1 184121178 184121370 -13074062 + B3 SINE B2 15 211 -5 2 1989 252 315 75 11 chr1 184121412 184121598 -13073834 + L1M2 LINE L1 5046 5265 -878 2 1989 1712 26 0 0 chr1 184121605 184121797 -13073635 + B2_Mm1a SINE B2 2 193 0 2 1989 749 146 7 0 chr1 184121819 184121960 -13073472 + B1_Mus1 SINE Alu 1 150 0 2 1989 198 0 0 0 chr1 184122813 184122835 -13072597 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2 1989 2002 156 47 29 chr1 184122860 184123059 -13072373 - MTC LTR MaLR -5 416 211 2 1989 1440 40 85 0 chr1 184123059 184123076 -13072356 - B2_Mm1a SINE B2 0 193 177 2 1989 252 0 0 0 chr1 184123076 184123104 -13072328 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2 1989 1440 40 85 0 chr1 184123104 184123263 -13072169 - B2_Mm1a SINE B2 -17 176 3 2 1989 2002 156 47 29 chr1 184123263 184123472 -13071960 - MTC LTR MaLR -211 210 1 2 1989 519 206 96 91 chr1 184123537 184123735 -13071697 - MTD LTR MaLR 0 419 221 2 1989 868 114 7 7 chr1 184123758 184123908 -13071524 + (TTCC)n Simple_repeat Simple_repeat 2 151 0 2 1989 3070 76 29 0 chr1 184123928 184124337 -13071095 + BGLII LTR ERVK 1 421 0 2 1989 1818 17 4 4 chr1 184124502 184124734 -13070698 + IAPEY3_LTR LTR ERVK 101 332 0 2 1989 1284 209 142 171 chr1 184124822 184125746 -13069686 + RMER3D-int LTR ERVK 489 1385 -1457 2 1989 459 0 0 0 chr1 184125749 184125800 -13069632 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1989 809 47 0 0 chr1 184125801 184125908 -13069524 - B1_Mus1 SINE Alu -12 136 30 2 1989 2983 183 51 91 chr1 184125909 184126646 -13068786 + RMER3D-int LTR ERVK 1376 2305 -537 2 1989 3043 32 0 0 chr1 184126646 184126992 -13068440 + ORR1A0 LTR MaLR 1 346 0 2 1989 2983 214 53 57 chr1 184126992 184127524 -13067908 + RMER3D-int LTR ERVK 2306 2842 0 2 1989 3009 71 37 0 chr1 184127524 184127930 -13067502 + BGLII LTR ERVK 1 421 0 2 1989 555 16 0 0 chr1 184127934 184127998 -13067434 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 2 1989 402 21 0 0 chr1 184128292 184128339 -13067093 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 2 1989 922 166 0 0 chr1 184128355 184128500 -13066932 - B1_Mus2 SINE Alu 0 147 3 2 1989 1238 41 0 0 chr1 184128626 184128773 -13066659 - B1_Mm SINE Alu 0 147 1 2 1989 492 237 0 0 chr1 184129451 184129548 -13065884 + B1F SINE Alu 2 98 -51 2 1989 380 244 32 55 chr1 184130483 184130652 -13064780 + RLTR14 LTR ERV1 225 380 -2 2 1989 1108 82 7 0 chr1 184130704 184130851 -13064581 - B1_Mus1 SINE Alu 0 148 1 2 1989 7493 12 4 0 chr1 184131024 184131843 -13063589 + RLTR13B2 LTR ERVK 1 822 0 2 1989 1221 104 5 27 chr1 184131845 184132033 -13063399 + ETnERV3-int LTR ERVK 3 186 -5622 2 1989 25966 126 27 35 chr1 184132445 184136890 -13058542 + ETnERV3-int LTR ERVK 186 3976 -1832 2 1989 240 35 0 0 chr1 184136890 184136919 -13058513 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1989 25966 118 51 24 chr1 184136919 184138513 -13056919 + ETnERV3-int LTR ERVK 3977 6070 -1174 2 1989 7492 11 4 0 chr1 184138523 184139340 -13056092 + RLTR13B2 LTR ERVK 1 820 -2 2 1989 781 19 10 0 chr1 184139340 184139443 -13055989 + RLTR13B2 LTR ERVK 719 822 0 2 1989 2171 110 45 13 chr1 184139671 184139984 -13055448 + ORR1A2 LTR MaLR 5 327 0 2 1989 1381 69 35 0 chr1 184140265 184140439 -13054993 + B2_Mm2 SINE B2 2 181 -14 2 1989 582 236 24 24 chr1 184140498 184140624 -13054808 + B1_Mur2 SINE Alu 3 128 -21 2 1989 373 283 43 34 chr1 184140659 184140776 -13054656 + B4 SINE B4 2 119 -173 2 1989 3070 117 11 27 chr1 184140791 184141265 -13054167 + RMER4A LTR ERVK 1 466 0 3 1989 3020 149 55 60 chr1 184141265 184141864 -13053568 + MurERV4-int LTR ERVK 1 596 -4664 3 1989 3975 153 34 12 chr1 184141904 184142584 -13052848 + MurERV4-int LTR ERVK 759 1453 -3807 3 1989 3374 113 11 0 chr1 184142582 184143051 -13052381 + MurERV4-int LTR ERVK 1859 2332 -2928 3 1989 1174 81 0 0 chr1 184143051 184143199 -13052233 + B1_Mus1 SINE Alu 1 148 0 3 1989 260 27 27 0 chr1 184143199 184143236 -13052196 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1989 186 43 0 0 chr1 184143260 184143283 -13052149 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1989 400 73 18 0 chr1 184143284 184143339 -13052093 + MurERV4-int LTR ERVK 2318 2373 -2887 3 1989 255 236 240 28 chr1 184143424 184143603 -13051829 - RLTR15 LTR ERVK -95 264 48 3 1989 6254 146 24 45 chr1 184143688 184144175 -13051257 + MurERV4-int LTR ERVK 2369 2822 -2438 3 1989 207 0 0 0 chr1 184144175 184144198 -13051234 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1989 6254 149 23 44 chr1 184144198 184144817 -13050615 + MurERV4-int LTR ERVK 2823 3441 -1819 3 1989 264 309 74 44 chr1 184144968 184145171 -13050261 - RLTR12B LTR ERVK -199 329 121 3 1989 7889 133 37 19 chr1 184145255 184146554 -13048878 + MurERV4-int LTR ERVK 3434 4755 -505 3 1989 4091 149 72 68 chr1 184146575 184147455 -13047977 - RMER19B LTR ERVK -17 885 3 3 1989 2979 152 2 62 chr1 184147456 184148002 -13047430 + MurERV4-int LTR ERVK 4748 5260 0 3 1989 2502 161 22 15 chr1 184148004 184148463 -13046969 + RMER4A LTR ERVK 5 466 0 3 1989 354 229 45 128 chr1 184148463 184148654 -13046778 + RSINE1 SINE B4 79 289 -3 3 1989 1352 30 0 6 chr1 184148856 184149026 -13046406 + (TCTCCC)n Simple_repeat Simple_repeat 1 169 0 3 1989 418 253 78 46 chr1 184149246 184149399 -13046033 + RodERV21-int LTR ERV1 50 207 -4784 3 1989 2742 28 28 0 chr1 184149844 184150162 -13045270 + IAPLTR2b LTR ERVK 1 327 0 3 1989 633 263 95 50 chr1 184150320 184150696 -13044736 + RMER20B LTR ERVK 128 578 -49 3 1989 1054 64 43 0 chr1 184151005 184151145 -13044287 - B1_Mus2 SINE Alu 0 147 2 3 1989 982 56 140 0 chr1 184151223 184151366 -13044066 + B2_Mm2 SINE B2 3 165 -30 3 1989 1152 51 0 0 chr1 184151716 184151854 -13043578 + B1_Mus2 SINE Alu 1 138 -9 3 1989 246 32 0 0 chr1 184151854 184151885 -13043547 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1989 198 0 0 0 chr1 184151920 184151942 -13043490 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1989 279 239 14 40 chr1 184151942 184152016 -13043416 + MYSERV-int LTR ERVK 1699 1770 -3752 3 1989 424 226 23 38 chr1 184152092 184152225 -13043207 + MYSERV-int LTR ERVK 5335 5465 -1085 3 1989 1856 228 59 31 chr1 184152226 184152765 -13042667 + RLTR20B3 LTR ERVK 1 554 -23 3 1989 1713 248 99 73 chr1 184153404 184154660 -13040772 + MYSERV-int LTR ERVK 5506 6214 -336 3 1989 1540 47 16 10 chr1 184154660 184154854 -13040578 + B2_Mm2 SINE B2 1 195 0 3 1989 1327 280 97 94 chr1 184154854 184155119 -13040313 + MYSERV-int LTR ERVK 3444 3676 -2461 3 1989 484 242 0 0 chr1 184155191 184155286 -13040146 - LSU-rRNA_Hsa rRNA rRNA -739 4296 4202 3 1989 321 322 11 33 chr1 184155331 184155511 -13039921 + CT-rich Low_complexity Low_complexity 1 176 0 3 1989 850 245 101 87 chr1 184155692 184155933 -13039499 + RMER17C-int LTR ERVK 2607 2850 -388 3 248 2005 110 68 7 chr1 184155933 184156243 -13039189 + ORR1A4 LTR MaLR 1 329 0 3 1990 850 253 78 61 chr1 184156243 184156501 -13038931 + RMER17C-int LTR ERVK 2851 2978 -260 3 1990 2019 154 174 38 chr1 184157824 184158215 -13037217 + RLTR41 LTR ERV1 1 444 -2 3 1990 1569 159 146 52 chr1 184158311 184158675 -13036757 - RMER10B LTR ERVL 0 398 1 3 1990 712 95 0 0 chr1 184159925 184160030 -13035402 - B1_Mus2 SINE Alu 0 147 43 3 1990 894 65 24 0 chr1 184160029 184160153 -13035279 + B1_Mur4 SINE Alu 11 137 -13 3 1990 276 30 0 0 chr1 184160153 184160186 -13035246 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1990 1143 87 6 0 chr1 184160553 184160714 -13034718 + RLTR1B LTR ERV1 351 512 0 3 1990 2036 112 67 19 chr1 184160714 184161209 -13034223 + RLTR1B-int LTR ERV1 1 367 -7189 3 1990 728 160 0 58 chr1 184161206 184161345 -13034087 + RLTR1B-int LTR ERV1 648 778 -2521 3 1990 10302 65 11 22 chr1 184161604 184161983 -13033449 + RLTR1B-int LTR ERV1 783 1163 -2136 3 1990 297 0 0 0 chr1 184161983 184162016 -13033416 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1990 10302 65 11 22 chr1 184162016 184162036 -13033396 + RLTR1B-int LTR ERV1 1164 1184 -2115 3 1990 3491 50 28 5 chr1 184162036 184162462 -13032970 - RLTR10C LTR ERVK 0 436 1 3 1990 10302 65 11 22 chr1 184162462 184163403 -13032029 + RLTR1B-int LTR ERV1 1185 2108 -1191 3 1990 5197 48 18 38 chr1 184163400 184164079 -13031353 + RLTR1B-int LTR ERV1 2635 3299 0 3 1990 3074 41 48 2 chr1 184164079 184164496 -13030936 + RLTR1B LTR ERV1 1 436 -76 3 1990 1280 86 34 6 chr1 184164499 184164674 -13030758 - B2_Mm2 SINE B2 -14 181 2 3 1990 568 277 21 0 chr1 184165074 184165215 -13030217 - B1_Mur1 SINE Alu -5 144 1 3 1990 919 333 3 9 chr1 184166423 184166750 -13028682 + MERVK26-int LTR ERVK 1666 1990 -4929 3 1990 252 196 0 0 chr1 184166766 184166812 -13028620 + MERVK26-int LTR ERVK 2458 2503 -4416 3 1990 2373 322 64 36 chr1 184166837 184167497 -13027935 + MERVK26-int LTR ERVK 2751 3446 -3473 3 1990 318 87 0 0 chr1 184167497 184167543 -13027889 + (CCA)n Simple_repeat Simple_repeat 2 47 0 3 1990 2373 322 64 36 chr1 184167543 184168272 -13027160 + MERVK26-int LTR ERVK 3447 4179 -2740 3 1990 263 128 0 0 chr1 184168276 184168315 -13027117 - ORR1A4 LTR MaLR -1 328 290 3 1990 2691 174 8 30 chr1 184168327 184168818 -13026614 + RLTR19A LTR ERVK 17 496 0 3 1990 5020 125 34 5 chr1 184168818 184169646 -13025786 - ORR1A4-int LTR MaLR -290 1673 184 3 1990 387 0 0 0 chr1 184169646 184169689 -13025743 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 1990 1142 78 7 0 chr1 184169690 184169832 -13025600 - B1_Mus2 SINE Alu -4 143 1 3 1990 1551 330 36 27 chr1 184169834 184170644 -13024788 + MERVK26-int LTR ERVK 4747 5563 -1356 3 1990 829 366 9 9 chr1 184170810 184171240 -13024192 + MERVK26-int LTR ERVK 6488 6917 -2 3 1990 596 248 102 0 chr1 184171540 184171588 -13023844 - RLTR16 LTR ERVK -43 462 415 3 1990 291 28 0 0 chr1 184171588 184171624 -13023808 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1990 596 248 102 0 chr1 184171624 184171732 -13023700 - RLTR16 LTR ERVK -91 414 291 3 1990 2655 47 37 14 chr1 184171730 184172078 -13023354 + MTA_Mm LTR MaLR 41 396 0 3 1990 7820 72 20 72 chr1 184172078 184173237 -13022195 + MTA_Mm-int LTR MaLR 1 1098 0 3 1990 3297 48 0 10 chr1 184173237 184173637 -13021795 + MTA_Mm LTR MaLR 1 396 0 3 1990 411 119 0 0 chr1 184173637 184173704 -13021728 + RMER16-int LTR ERVK 5340 5406 0 3 1990 1136 176 128 42 chr1 184173704 184174006 -13021426 + RMER16 LTR ERVK 1 494 -39 3 1990 2373 191 64 13 chr1 184174006 184174478 -13020954 + RLTR20A2 LTR ERVK 1 496 -82 3 1990 497 330 93 22 chr1 184174514 184174827 -13020605 - L1MC LINE L1 -744 5402 5068 3 1990 24 32 0 0 chr1 184174890 184174921 -13020511 + AT_rich Low_complexity Low_complexity 1 31 0 3 1990 271 297 127 28 chr1 184175048 184175190 -13020242 - MER2B DNA MER2_type -21 315 160 3 1990 261 304 41 52 chr1 184175465 184175562 -13019870 - MLT1A0 LTR MaLR -266 99 4 3 1990 386 239 32 11 chr1 184175851 184175944 -13019488 + MTD LTR MaLR 323 417 -2 3 1990 490 290 0 0 chr1 184176134 184176265 -13019167 + B1_Mur1 SINE Alu 1 131 -18 3 1990 719 125 35 7 chr1 184176883 184177168 -13018264 + (TG)n Simple_repeat Simple_repeat 1 293 0 3 1990 622 288 59 11 chr1 184177204 184177390 -13018042 + MTE-int LTR MaLR 1147 1341 -239 3 1990 466 342 6 65 chr1 184177422 184177591 -13017841 - MTEa LTR MaLR -199 180 22 3 1990 4198 201 126 17 chr1 184177869 184178820 -13016612 - RMER1B Other Other -9 1057 3 3 1990 318 169 0 0 chr1 184179511 184179576 -13015856 + A-rich Low_complexity Low_complexity 1 65 0 3 1990 212 362 58 0 chr1 184180346 184180415 -13015017 + ID2 SINE ID 3 75 -8 3 1990 379 0 39 0 chr1 184180431 184180482 -13014950 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1990 3619 154 14 34 chr1 184181156 184181775 -13013657 + RMER13A LTR ERVK 1 607 -253 3 1990 858 281 46 48 chr1 184182273 184182562 -13012870 - B4A SINE B4 0 292 2 3 1990 293 244 15 129 chr1 184183288 184183420 -13012012 + RLTR25B LTR ERVK 392 508 -520 3 1990 936 98 8 0 chr1 184183323 184183455 -13011977 + B1_Mur3 SINE Alu 17 149 0 3 1990 182 65 65 0 chr1 184183456 184183487 -13011945 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 3 1990 590 130 9 0 chr1 184183491 184183599 -13011833 + (GAAAA)n Simple_repeat Simple_repeat 2 110 0 3 1990 279 0 0 0 chr1 184183848 184183879 -13011553 + (TTA)n Simple_repeat Simple_repeat 2 32 0 3 1990 242 204 0 0 chr1 184183882 184183926 -13011506 - B3 SINE B2 -16 200 157 3 1990 879 255 28 20 chr1 184183926 184184178 -13011254 + Lx7 LINE L1 7118 7371 -325 3 1990 247 308 39 0 chr1 184184164 184184268 -13011164 + Lx7 LINE L1 7565 7672 -24 3 1990 192 77 0 0 chr1 184184278 184184304 -13011128 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 1990 651 275 40 7 chr1 184184540 184184690 -13010742 + RSINE1 SINE B4 2 156 -9 3 1990 322 288 0 0 chr1 184185364 184185444 -13009988 + HAL1 LINE L1 1664 1743 -764 3 1990 684 181 0 75 chr1 184186714 184186875 -13008557 + B1_Mur3 SINE Alu 1 149 0 3 1990 5739 45 65 0 chr1 184187250 184187947 -13007485 + RLTR4_Mm LTR ERV1 1 742 0 3 1990 66037 11 2 0 chr1 184187947 184195534 -12999898 + RLTR4_MM-int LTR ERV1 1 7601 0 3 1990 5739 45 65 0 chr1 184195534 184196231 -12999201 + RLTR4_Mm LTR ERV1 1 742 0 3 1990 213 255 19 19 chr1 184196537 184196589 -12998843 + B1F SINE Alu 98 149 0 3 1990 372 335 182 5 chr1 184196617 184196815 -12998617 - LTR31 LTR ERV1 -243 376 144 3 1990 1409 89 21 0 chr1 184197827 184198017 -12997415 - B2_Mm2 SINE B2 -1 194 1 3 1990 578 299 61 0 chr1 184198175 184198372 -12997060 + ID_B1 SINE B4 3 211 -13 3 1990 225 293 153 10 chr1 184198568 184198767 -12996665 - L2c LINE L2 -228 3159 2918 3 1990 349 214 141 10 chr1 184198902 184199001 -12996431 + PB1D10 SINE Alu 1 112 -5 3 1990 183 162 0 0 chr1 184199215 184199252 -12996180 + G-rich Low_complexity Low_complexity 6 42 0 3 1990 261 0 0 0 chr1 184199356 184199385 -12996047 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1990 441 219 80 48 chr1 184199400 184199525 -12995907 + L1MB2 LINE L1 5949 6077 -94 3 1990 419 48 0 16 chr1 184199525 184199588 -12995844 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1990 715 237 46 7 chr1 184199598 184199751 -12995681 - B3A SINE B2 -38 160 2 3 1990 192 77 0 0 chr1 184200263 184200289 -12995143 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 3 1990 855 155 200 33 chr1 184200315 184200495 -12994937 + B3 SINE B2 2 211 -5 3 1990 809 183 45 65 chr1 184200527 184200726 -12994706 - B2_Mm2 SINE B2 0 195 1 3 1990 27 0 0 0 chr1 184200922 184200949 -12994483 + AT_rich Low_complexity Low_complexity 1 27 0 3 1990 1227 86 23 17 chr1 184202416 184202593 -12992839 - B2_Mm2 SINE B2 -16 179 2 3 1990 294 231 153 57 chr1 184204858 184204982 -12990450 - MTE2a LTR MaLR -2 377 242 3 1990 435 19 0 0 chr1 184205072 184205124 -12990308 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3 1990 254 236 93 40 chr1 184205165 184205240 -12990192 + ID4 SINE ID 1 79 -4 3 1990 457 294 163 16 chr1 184206015 184206205 -12989227 - RMER15 LTR ERVL -18 557 340 3 1990 980 214 35 0 chr1 184207556 184207757 -12987675 + B3 SINE B2 4 211 -5 3 1990 24 32 0 0 chr1 184208593 184208624 -12986808 + AT_rich Low_complexity Low_complexity 1 31 0 3 1990 279 0 0 0 chr1 184209859 184209890 -12985542 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1990 936 197 19 60 chr1 184210182 184210398 -12985034 - B3 SINE B2 -1 215 9 3 1990 502 226 75 0 chr1 184210585 184210691 -12984741 + PB1D10 SINE Alu 3 116 -1 3 1990 363 244 132 4 chr1 184210948 184211196 -12984236 + L1M4 LINE L1 5493 5793 -385 3 1990 23 33 0 0 chr1 184212610 184212640 -12982792 + GC_rich Low_complexity Low_complexity 1 30 0 4 1990 238 272 120 0 chr1 184213370 184213462 -12981970 - PB1D9 SINE Alu 0 120 18 4 1990 425 267 152 13 chr1 184213902 184214126 -12981306 + L1MC5 LINE L1 7312 7566 -395 4 1990 725 210 60 46 chr1 184214146 184214324 -12981108 - B3A SINE B2 -20 175 1 4 1990 275 267 74 53 chr1 184214384 184214479 -12980953 + PB1D7 SINE Alu 2 98 -22 4 1990 27 49 0 0 chr1 184214597 184214638 -12980794 + AT_rich Low_complexity Low_complexity 1 41 0 4 1990 324 249 303 43 chr1 184214874 184214994 -12980438 + RMER15 LTR ERVL 300 467 -108 4 1990 2000 95 73 70 chr1 184214994 184215322 -12980110 + ORR1A4 LTR MaLR 1 329 0 4 1990 324 249 303 43 chr1 184215322 184215386 -12980046 + RMER15 LTR ERVL 468 532 -43 4 1990 1335 98 16 0 chr1 184215448 184215631 -12979801 - B2_Mm2 SINE B2 -8 187 2 4 1990 603 139 202 16 chr1 184215677 184215801 -12979631 - B1_Mur3 SINE Alu -2 147 1 4 1990 1215 0 0 0 chr1 184215803 184215938 -12979494 + (TCTCC)n Simple_repeat Simple_repeat 3 137 0 4 1990 798 41 0 0 chr1 184215938 184216035 -12979397 + (TTTCC)n Simple_repeat Simple_repeat 3 100 0 4 1990 532 226 83 0 chr1 184216046 184216179 -12979253 - B1_Mur1 SINE Alu -5 144 1 4 1990 457 233 141 8 chr1 184216824 184216945 -12978487 + ID_B1 SINE B4 81 217 -7 4 1990 373 188 0 0 chr1 184216978 184217042 -12978390 - ID_B1 SINE B4 -2 222 159 4 1990 311 330 32 0 chr1 184217426 184217520 -12977912 + ID_B1 SINE B4 80 176 -48 4 1990 564 233 0 40 chr1 184217619 184217744 -12977688 + RSINE1 SINE B4 3 122 -43 4 1990 417 20 0 0 chr1 184217749 184217799 -12977633 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1990 246 81 0 0 chr1 184217799 184217835 -12977597 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1990 291 303 39 63 chr1 184217951 184218078 -12977354 - LTR33A_ LTR ERVL -4 527 404 4 1990 373 304 157 18 chr1 184218135 184218362 -12977070 - LTR33A_ LTR ERVL -259 261 10 4 1990 211 131 66 0 chr1 184218573 184218634 -12976798 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 4 1990 298 275 55 9 chr1 184219377 184219487 -12975945 + L1M4b LINE L1 105 219 -7115 4 1990 316 301 52 0 chr1 184219539 184219692 -12975740 - RLTR11A2 LTR ERVK -224 303 143 4 1990 180 0 0 0 chr1 184219692 184219712 -12975720 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1990 1174 61 0 26 chr1 184219712 184219863 -12975569 - B1_Mus1 SINE Alu 0 148 2 4 1990 529 247 17 81 chr1 184219864 184220036 -12975396 - RLTR11A2 LTR ERVK -366 161 1 4 1990 274 309 41 0 chr1 184220087 184220184 -12975248 + L1M4b LINE L1 379 479 -6855 4 1990 207 0 0 0 chr1 184220443 184220466 -12974966 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1990 1196 213 105 44 chr1 184220505 184220820 -12974612 - RLTR42-int LTR ERVK -4041 1481 1148 4 1990 2148 112 6 59 chr1 184220827 184221168 -12974264 - ORR1A2 LTR MaLR -4 323 1 4 1990 6977 138 38 24 chr1 184221169 184222162 -12973270 - ORR1A2-int LTR MaLR 0 1963 946 4 1990 1287 91 68 0 chr1 184222162 184222338 -12973094 + B2_Mm2 SINE B2 4 191 -4 4 1990 5463 143 42 24 chr1 184222338 184222510 -12972922 - ORR1A2-int LTR MaLR -1018 945 782 4 1990 2587 94 6 14 chr1 184222510 184222875 -12972557 + RLTR8 LTR ERVK 4 365 0 4 1990 5463 143 42 24 chr1 184222875 184222937 -12972495 - ORR1A2-int LTR MaLR -1182 781 720 4 1990 1151 176 55 63 chr1 184222897 184223151 -12972281 - MT2B LTR ERVL -315 286 35 4 1990 821 88 0 0 chr1 184223167 184223269 -12972163 + L1VL4 LINE L1 249 350 -5952 4 1990 531 49 0 0 chr1 184223271 184223332 -12972100 - Lx2 LINE L1 -967 5669 5609 4 1990 6435 99 34 1 chr1 184223327 184224230 -12971202 + Lx2 LINE L1 5708 6640 -357 4 1990 1519 102 9 4 chr1 184224230 184224457 -12970975 + Lx2 LINE L1 6770 6997 0 4 1990 3235 139 48 25 chr1 184224457 184225085 -12970347 - ORR1A2-int LTR MaLR -1320 643 2 4 1990 1827 165 38 21 chr1 184225086 184225426 -12970006 - ORR1A2 LTR MaLR 0 346 1 4 1990 1914 237 129 40 chr1 184225430 184226080 -12969352 - RLTR42-int LTR ERVK -4377 1145 438 4 1990 479 206 0 27 chr1 184226167 184226277 -12969155 - RLTR42-int LTR ERVK -5212 310 204 4 1990 286 91 0 0 chr1 184226659 184226703 -12968729 - RLTR42 LTR ERVK -195 44 1 4 1990 958 103 6 31 chr1 184226740 184226900 -12968532 + RLTR9A LTR ERVK 203 358 -10 4 1990 180 0 0 0 chr1 184226900 184226920 -12968512 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1990 315 206 141 20 chr1 184227495 184227594 -12967838 - PB1D10 SINE Alu 0 117 7 4 1990 371 241 79 18 chr1 184227842 184227864 -12967568 + L1MB4 LINE L1 5995 6016 -164 4 1990 195 42 0 0 chr1 184227864 184227888 -12967544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1990 371 241 79 18 chr1 184227888 184227979 -12967453 + L1MB4 LINE L1 6017 6114 -66 4 1990 314 45 23 0 chr1 184227988 184228032 -12967400 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 4 1990 568 254 0 37 chr1 184228032 184228167 -12967265 - B1_Mur2 SINE Alu -12 137 8 4 1990 2432 145 52 7 chr1 184228296 184228699 -12966733 - MTC LTR MaLR 0 421 1 4 1990 323 239 15 100 chr1 184228748 184228764 -12966668 + MT2B LTR ERVL 139 185 -416 4 1990 326 280 92 8 chr1 184228764 184228784 -12966648 + B4 SINE B4 70 100 -192 4 1990 793 110 66 0 chr1 184228784 184228795 -12966637 + B1_Mur4 SINE Alu 6 16 -134 4 1990 387 0 0 0 chr1 184228795 184228838 -12966594 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1990 323 239 15 100 chr1 184228838 184228920 -12966512 + MT2B LTR ERVL 186 256 -345 4 1990 793 110 66 0 chr1 184228925 184228962 -12966470 + B1_Mur4 SINE Alu 17 148 -2 4 1990 3157 52 42 0 chr1 184229286 184229669 -12965763 + MTB LTR MaLR 2 400 0 4 1990 198 0 0 0 chr1 184229698 184229720 -12965712 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1990 1950 175 34 177 chr1 184229763 184230380 -12965052 - RLTR24 LTR ERV1 0 529 1 4 1990 385 167 0 15 chr1 184230380 184230447 -12964985 + MTC LTR MaLR 55 120 -299 4 1990 1449 40 0 54 chr1 184230447 184230633 -12964799 - B2_Mm2 SINE B2 -19 176 1 4 1990 506 209 154 19 chr1 184230657 184230813 -12964619 + MTD LTR MaLR 1 177 -242 4 1990 570 169 153 8 chr1 184230824 184230955 -12964477 + MTD LTR MaLR 262 411 -8 4 1990 745 229 57 44 chr1 184230978 184231206 -12964226 + MTD LTR MaLR 175 405 -14 4 1990 1037 249 32 62 chr1 184231373 184231742 -12963690 - RMER5 LTR ERV1 -144 390 33 4 1990 288 291 0 12 chr1 184231801 184231881 -12963551 - L1MC LINE L1 -2060 5822 5744 4 1990 794 254 74 10 chr1 184231947 184232150 -12963282 - B3 SINE B2 0 216 1 4 1990 1323 161 63 18 chr1 184232305 184232590 -12962842 + MTC LTR MaLR 104 401 -20 4 1990 333 0 0 0 chr1 184233438 184233475 -12961957 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 1990 907 214 56 20 chr1 184233475 184233671 -12961761 - B3 SINE B2 -12 204 2 4 1990 276 30 0 0 chr1 184233896 184233929 -12961503 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1990 477 50 0 0 chr1 184234050 184234110 -12961322 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 4 1990 2866 145 32 32 chr1 184234394 184234894 -12960538 - MT2B LTR ERVL -101 500 1 4 1990 23434 169 29 58 chr1 184234903 184235871 -12959561 + Lx6 LINE L1 978 1910 -3970 4 1990 1185 68 7 0 chr1 184235871 184236017 -12959415 - B1_Mus2 SINE Alu 0 147 1 4 1990 23434 163 37 34 chr1 184236017 184237993 -12957439 + Lx6 LINE L1 1911 3827 -2053 4 1990 1844 117 61 55 chr1 184237993 184238320 -12957112 + ORR1A4 LTR MaLR 1 329 0 4 1990 23434 163 37 34 chr1 184238320 184239098 -12956334 + Lx6 LINE L1 3828 4624 -1256 4 1990 240 35 0 0 chr1 184239098 184239127 -12956305 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1990 23434 186 45 47 chr1 184239127 184241308 -12954124 + Lx6 LINE L1 4625 6831 -629 4 1990 339 250 120 0 chr1 184241308 184241416 -12954016 + B1F SINE Alu 29 149 0 4 1990 812 263 136 36 chr1 184241429 184241592 -12953840 + L1MA4A LINE L1 5417 5584 -719 4 1990 914 220 80 0 chr1 184241592 184241792 -12953640 + B3 SINE B2 1 216 0 4 1990 812 263 136 36 chr1 184241792 184242105 -12953327 + L1MA4A LINE L1 5585 5940 -363 4 1990 1287 73 62 0 chr1 184242412 184242589 -12952843 + B2_Mm1t SINE B2 1 188 -5 4 1990 472 255 20 46 chr1 184247756 184247908 -12947524 + B1F1 SINE Alu 2 149 0 4 1990 371 225 142 0 chr1 184249656 184249776 -12945656 + B1F2 SINE Alu 1 137 -12 4 1990 971 117 26 33 chr1 184250550 184250701 -12944731 - B1_Mur4 SINE Alu 0 150 1 4 1990 449 296 9 0 chr1 184251430 184251538 -12943894 + PB1D10 SINE Alu 2 110 -7 4 1990 186 43 0 0 chr1 184251543 184251566 -12943866 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4 1990 674 152 16 33 chr1 184251706 184251828 -12943604 + PB1D9 SINE Alu 1 120 0 4 1990 716 261 30 5 chr1 184252241 184252441 -12942991 + B3 SINE B2 3 207 -9 4 1990 381 209 223 85 chr1 184252441 184252629 -12942803 - B3 SINE B2 -1 215 2 4 1990 25 31 0 0 chr1 184252632 184252664 -12942768 + AT_rich Low_complexity Low_complexity 1 32 0 4 1990 687 228 7 14 chr1 184252666 184252813 -12942619 - B1_Mur2 SINE Alu -1 148 3 4 1990 223 28 56 0 chr1 184252828 184252864 -12942568 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 4 1990 275 0 0 28 chr1 184253004 184253040 -12942392 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1990 1107 72 0 0 chr1 184253051 184253190 -12942242 + B1_Mus1 SINE Alu 2 140 -8 4 1990 187 87 0 61 chr1 184253219 184253268 -12942164 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 4 1990 368 245 132 0 chr1 184254454 184254560 -12940872 - PB1D9 SINE Alu 0 120 1 4 1990 325 215 0 0 chr1 184256735 184256800 -12938632 + ID4 SINE ID 4 68 -15 4 1990 960 59 0 0 chr1 184256802 184256938 -12938494 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 1990 316 265 24 0 chr1 184257064 184257147 -12938285 - L1MB7 LINE L1 -84 6100 6016 4 1990 233 235 94 0 chr1 184257485 184257570 -12937862 - L1M4 LINE L1 -492 5687 5595 4 1990 925 205 89 0 chr1 184257615 184257805 -12937627 - B3 SINE B2 -5 211 5 4 1990 435 309 48 0 chr1 184257815 184257941 -12937491 - B1F1 SINE Alu -5 144 13 4 1990 21 0 0 0 chr1 184258078 184258099 -12937333 + AT_rich Low_complexity Low_complexity 1 21 0 4 1990 381 292 0 22 chr1 184258109 184258200 -12937232 - RSINE1 SINE B4 -29 136 48 4 1990 207 162 0 0 chr1 184258218 184258255 -12937177 + (TTA)n Simple_repeat Simple_repeat 1 37 0 4 1990 447 261 114 8 chr1 184258256 184258387 -12937045 - B1F2 SINE Alu -3 146 2 4 1990 810 306 57 35 chr1 184258393 184258827 -12936605 - L1M4 LINE L1 -1239 4907 4465 4 1990 738 216 227 0 chr1 184258836 184259012 -12936420 - B3 SINE B2 0 216 1 4 1990 475 270 22 67 chr1 184259031 184259166 -12936266 - ID_B1 SINE B4 -1 223 95 4 1990 777 160 13 40 chr1 184259178 184259328 -12936104 - B1_Mm SINE Alu 0 147 2 4 1990 301 302 50 40 chr1 184259403 184259503 -12935929 - B3 SINE B2 -114 102 2 4 1990 751 114 106 0 chr1 184259517 184259640 -12935792 - B1_Mus1 SINE Alu -10 138 3 4 1990 240 200 36 0 chr1 184259770 184259825 -12935607 - L1M4 LINE L1 -1991 4155 4099 4 1990 224 250 0 0 chr1 184261986 184262038 -12933394 + A-rich Low_complexity Low_complexity 1 52 0 4 1990 463 125 64 23 chr1 184262399 184262571 -12932861 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 5 1990 483 110 97 0 chr1 184262590 184262744 -12932688 + (CACAG)n Simple_repeat Simple_repeat 1 169 0 5 1990 519 244 81 7 chr1 184263220 184263356 -12932076 + B1F SINE Alu 3 148 -1 5 1990 707 242 93 21 chr1 184263563 184263757 -12931675 - B3 SINE B2 -8 208 1 5 1990 1992 52 4 4 chr1 184264454 184264723 -12930709 + MTA_Mm LTR MaLR 128 396 0 5 1990 490 181 0 0 chr1 184264726 184264809 -12930623 - B3 SINE B2 -133 83 1 5 1990 546 282 47 16 chr1 184265138 184265329 -12930103 + B3A SINE B2 2 198 0 5 1990 210 139 0 0 chr1 184265376 184265412 -12930020 + PB1D10 SINE Alu 51 86 -31 5 1990 1686 36 0 0 chr1 184265632 184265825 -12929607 - B2_Mm1a SINE B2 0 193 1 5 1990 263 245 78 39 chr1 184266150 184266252 -12929180 + ORR1E LTR MaLR 44 149 -210 5 1990 417 245 51 0 chr1 184266752 184266850 -12928582 + ID_B1 SINE B4 120 222 -2 5 1990 335 39 59 0 chr1 184266852 184266903 -12928529 + (CAAAA)n Simple_repeat Simple_repeat 5 58 0 5 1990 189 0 0 0 chr1 184267329 184267350 -12928082 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 5 1990 711 141 0 106 chr1 184267357 184267508 -12927924 - B1_Mur4 SINE Alu -2 148 14 5 1990 404 325 34 69 chr1 184267361 184267728 -12927704 - ID_B1 SINE B4 -65 227 1 5 1990 432 230 39 23 chr1 184267983 184268112 -12927320 + Charlie1 DNA MER1_type 115 245 -2536 5 1990 27 81 0 0 chr1 184271563 184271625 -12923807 + GC_rich Low_complexity Low_complexity 1 62 0 5 1990 296 261 75 61 chr1 184272152 184272299 -12923133 + L1MB7 LINE L1 5812 5960 -224 5 1990 225 0 0 0 chr1 184272303 184272328 -12923104 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1990 281 180 0 0 chr1 184272343 184272393 -12923039 + B3A SINE B2 30 79 -119 5 1990 308 143 0 0 chr1 184272558 184272607 -12922825 - B3 SINE B2 -167 49 1 5 1990 180 0 0 0 chr1 184272621 184272641 -12922791 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1990 259 333 72 41 chr1 184272658 184272949 -12922483 + L1MC4 LINE L1 7193 7492 -550 5 1990 1137 229 128 15 chr1 184272974 184273302 -12922130 + ORR1D2 LTR MaLR 2 366 -4 5 1990 273 300 0 0 chr1 184274030 184274100 -12921332 - ID4_ SINE ID -13 70 1 5 1990 213 310 0 0 chr1 184274463 184274521 -12920911 - ID4_ SINE ID -22 61 4 5 1990 3241 29 42 3 chr1 184274521 184274902 -12920530 + MTA_Mm LTR MaLR 1 396 0 5 1990 231 114 0 0 chr1 184274911 184274946 -12920486 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1990 498 200 0 0 chr1 184275458 184275543 -12919889 - B3 SINE B2 -131 85 1 5 1990 485 256 167 56 chr1 184275571 184275823 -12919609 + B4A SINE B4 1 280 -12 5 1990 306 246 0 14 chr1 184276358 184276432 -12919000 - MTEb LTR MaLR -13 366 294 5 1990 218 320 47 28 chr1 184276655 184276761 -12918671 + MER5A DNA MER1_type 2 109 -80 5 1990 180 0 0 0 chr1 184277052 184277072 -12918360 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1990 334 284 16 65 chr1 184277194 184277318 -12918114 + B4 SINE B4 6 123 -169 5 1990 611 207 0 11 chr1 184277449 184277630 -12917802 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1990 892 183 145 0 chr1 184278168 184278354 -12917078 + B3 SINE B2 1 213 -3 5 1990 21 0 0 0 chr1 184278533 184278554 -12916878 + AT_rich Low_complexity Low_complexity 1 21 0 5 1990 637 244 6 73 chr1 184278567 184278744 -12916688 - RSINE1 SINE B4 0 165 1 5 1990 1693 246 93 29 chr1 184279216 184279734 -12915698 + Lx8 LINE L1 6922 7472 -1 5 1990 261 0 0 0 chr1 184279740 184279769 -12915663 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 5 1990 370 269 222 37 chr1 184281064 184281253 -12914179 - ID_B1 SINE B4 0 224 1 5 1990 689 320 38 5 chr1 184281310 184281520 -12913912 - MLT1A0 LTR MaLR -5 360 144 5 1990 575 279 0 79 chr1 184281550 184281702 -12913730 - B1_Mur1 SINE Alu -9 140 1 5 1990 285 224 17 0 chr1 184281702 184281757 -12913675 - MLT1A0 LTR MaLR -206 159 104 5 1990 216 321 0 0 chr1 184281758 184281814 -12913618 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1990 786 206 14 0 chr1 184281901 184282042 -12913390 - B1_Mur2 SINE Alu -1 148 6 5 1990 351 264 23 83 chr1 184281925 184282057 -12913375 - MT2B LTR ERVL -323 278 155 5 1990 903 170 14 0 chr1 184282186 184282333 -12913099 + B1_Mur4 SINE Alu 1 149 -1 5 1990 998 256 56 0 chr1 184282393 184282608 -12912824 - B4A SINE B4 -57 235 9 5 1990 397 256 0 12 chr1 184282616 184282699 -12912733 - MLT1A0 LTR MaLR -283 82 1 5 1990 228 170 151 0 chr1 184283297 184283350 -12912082 - MLT2C1 LTR ERVL -6 557 497 5 1990 180 0 0 0 chr1 184283506 184283526 -12911906 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1990 577 263 23 0 chr1 184283526 184283659 -12911773 - B1F SINE Alu -13 136 1 5 1990 198 0 0 0 chr1 184283733 184283755 -12911677 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1990 352 315 9 0 chr1 184283848 184283959 -12911473 - PB1D10 SINE Alu 0 117 6 5 1990 388 139 25 0 chr1 184284658 184284737 -12910695 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1990 566 231 174 6 chr1 184284849 184285010 -12910422 - B4A SINE B4 0 292 105 5 1990 204 293 115 74 chr1 184285398 184285667 -12909765 + L4 LINE RTE 1656 1935 -94 5 1990 210 175 0 0 chr1 184285920 184285960 -12909472 + PB1D9 SINE Alu 80 119 -1 5 1990 189 265 80 20 chr1 184286016 184286066 -12909366 + MIR SINE MIR 101 153 -109 5 1990 289 57 0 0 chr1 184286089 184286124 -12909308 + U2 snRNA snRNA 1 35 -153 5 1990 951 185 93 26 chr1 184286348 184286542 -12908890 + B3 SINE B2 7 213 -3 5 1990 318 286 203 44 chr1 184286520 184286747 -12908685 - MLT1F LTR MaLR -22 526 264 5 1990 243 332 59 147 chr1 184286815 184287101 -12908331 + MER21B LTR ERV1 8 268 -595 5 248 233 275 0 133 chr1 184287162 184287267 -12908165 + PB1D10 SINE Alu 27 117 0 5 1991 213 159 0 22 chr1 184287273 184287318 -12908114 + A-rich Low_complexity Low_complexity 2 45 0 5 1991 266 295 8 56 chr1 184287535 184287658 -12907774 - MIR SINE MIR -55 153 44 5 1991 261 0 0 0 chr1 184288149 184288178 -12907254 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1991 608 59 12 0 chr1 184288617 184288702 -12906730 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 5 1991 222 220 0 20 chr1 184288708 184288759 -12906673 + CT-rich Low_complexity Low_complexity 3 52 0 5 1991 1324 88 5 37 chr1 184288772 184288960 -12906472 - B2_Mm1a SINE B2 -11 182 1 5 1991 351 0 0 0 chr1 184289051 184289090 -12906342 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1991 197 33 0 32 chr1 184289923 184289954 -12905478 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5 1991 450 228 54 0 chr1 184289972 184290064 -12905368 + ID_B1 SINE B4 87 183 -41 5 1991 354 322 8 34 chr1 184290064 184290086 -12905346 + PB1D10 SINE Alu 6 116 -1 5 1991 605 246 27 54 chr1 184290094 184290278 -12905154 + B4 SINE B4 2 263 -29 5 1991 302 253 28 112 chr1 184290793 184290900 -12904532 - BC1_Mm scRNA scRNA -54 98 1 5 1991 297 0 0 0 chr1 184290939 184290972 -12904460 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1991 228 67 0 0 chr1 184290972 184291001 -12904431 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1991 763 284 24 58 chr1 184291013 184291308 -12904124 - B4A SINE B4 0 292 8 5 1991 278 282 32 24 chr1 184291312 184291431 -12904001 - PB1 SINE Alu 0 117 4 5 1991 698 132 0 9 chr1 184291836 184291943 -12903489 + B2_Mm2 SINE B2 2 107 -88 5 1991 1880 116 45 74 chr1 184292768 184293104 -12902328 - ORR1A2 LTR MaLR 0 327 2 5 1991 387 316 8 0 chr1 184293346 184293463 -12901969 + PB1D7 SINE Alu 2 119 -1 5 1991 425 308 115 98 chr1 184293678 184294421 -12901011 - HAL1 LINE L1 -168 2339 1602 5 1991 618 239 30 111 chr1 184294421 184294575 -12900857 - B3A SINE B2 -16 182 42 5 1991 1172 62 0 0 chr1 184294575 184294721 -12900711 - B1_Mus2 SINE Alu 0 147 2 5 1991 618 239 30 111 chr1 184294721 184294764 -12900668 - B3A SINE B2 -157 41 1 5 1991 425 308 115 98 chr1 184294764 184294975 -12900457 - HAL1 LINE L1 -906 1601 1369 5 1991 705 164 171 37 chr1 184295110 184295274 -12900158 - Lx9 LINE L1 -245 7399 7214 5 1991 644 366 10 42 chr1 184295294 184295602 -12899830 - HAL1 LINE L1 -1126 1381 1084 5 1991 253 44 0 82 chr1 184295685 184295734 -12899698 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 5 1991 619 204 108 97 chr1 184296135 184296330 -12899102 - B3A SINE B2 -1 197 1 5 1991 231 312 124 7 chr1 184296375 184296520 -12898912 - HAL1 LINE L1 -2207 300 139 5 1991 198 103 0 0 chr1 184296577 184296606 -12898826 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 5 1991 574 244 240 27 chr1 184296697 184297031 -12898401 + MTD LTR MaLR 1 405 -14 5 1991 291 337 159 51 chr1 184297130 184297753 -12897679 + L3 LINE CR1 3697 4386 -103 5 1991 225 108 0 0 chr1 184299510 184299547 -12895885 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 1991 297 320 0 0 chr1 184299560 184299635 -12895797 - ID4 SINE ID -8 75 1 5 1991 368 274 104 0 chr1 184299855 184299961 -12895471 - PB1 SINE Alu -5 122 6 5 1991 219 288 238 33 chr1 184299861 184299983 -12895449 - ID_B1 SINE B4 -12 212 66 5 1991 471 130 0 0 chr1 184300506 184300583 -12894849 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 5 1991 350 42 21 0 chr1 184300940 184300988 -12894444 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1991 490 214 192 10 chr1 184301087 184301191 -12894241 - B1F SINE Alu -3 124 2 5 1991 296 200 165 0 chr1 184301191 184301217 -12894215 - B4A SINE B4 -206 86 47 5 1991 377 312 15 23 chr1 184301764 184301895 -12893537 + RSINE1 SINE B4 3 132 -33 5 1991 554 232 39 72 chr1 184301938 184302091 -12893341 + B1F1 SINE Alu 2 149 0 5 1991 485 246 17 9 chr1 184302623 184302738 -12892694 + ID_B1 SINE B4 105 220 -4 6 1991 227 344 31 39 chr1 184302738 184302753 -12892679 - YREP_Mm Unknown Unknown -1519 293 165 6 1991 787 177 229 0 chr1 184302818 184302993 -12892439 + B3 SINE B2 2 216 0 6 1991 634 305 14 81 chr1 184303029 184303250 -12892182 + MTE2a LTR MaLR 9 214 -165 6 1991 3270 43 5 8 chr1 184303260 184303657 -12891775 - MTA_Mm LTR MaLR 0 396 1 6 1991 685 205 0 43 chr1 184304170 184304308 -12891124 + MTE2a LTR MaLR 183 314 -65 6 1991 239 212 174 43 chr1 184304441 184304510 -12890922 + RSINE1 SINE B4 83 160 -5 6 1991 386 218 139 0 chr1 184304639 184304740 -12890692 - PB1D10 SINE Alu 0 117 3 6 1991 798 265 99 29 chr1 184305932 184306204 -12889228 - B4A SINE B4 -1 291 1 6 1991 648 233 27 0 chr1 184307094 184307244 -12888188 + RSINE1 SINE B4 2 155 -10 6 1991 1134 45 0 0 chr1 184307925 184308058 -12887374 - B1_Mus1 SINE Alu -15 133 1 6 1991 23 0 0 0 chr1 184308099 184308122 -12887310 + AT_rich Low_complexity Low_complexity 1 23 0 6 1991 221 0 0 33 chr1 184308200 184308230 -12887202 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1991 745 293 76 28 chr1 184308357 184308648 -12886784 + Lx8 LINE L1 6640 6944 -529 6 1991 327 49 0 0 chr1 184308923 184308964 -12886468 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1991 443 283 69 0 chr1 184309191 184309364 -12886068 - L1M5 LINE L1 -418 5755 5571 6 1991 218 357 48 0 chr1 184309459 184309543 -12885889 + L4 LINE RTE 1005 1092 -937 6 1991 780 294 26 66 chr1 184309655 184309881 -12885551 + B4 SINE B4 3 219 -73 6 1991 338 57 0 19 chr1 184309945 184309999 -12885433 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1991 1545 174 158 22 chr1 184310185 184310508 -12884924 - ORR1B2 LTR MaLR 0 367 1 6 1991 1217 137 38 19 chr1 184311586 184311795 -12883637 - B3 SINE B2 -3 213 1 6 1991 313 296 119 8 chr1 184312476 184312602 -12882830 + RMER15 LTR ERVL 422 561 -14 6 1991 270 227 0 0 chr1 184313087 184313162 -12882270 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1991 279 330 57 68 chr1 184313630 184313822 -12881610 + MIRb SINE MIR 18 207 -61 6 1991 3339 55 2 0 chr1 184314195 184314594 -12880838 - MTB LTR MaLR 0 400 1 6 1991 356 239 14 1 chr1 184314675 184314764 -12880668 + L1MA9 LINE L1 5675 5833 -479 6 1991 189 0 0 0 chr1 184314764 184314785 -12880647 + (TAGG)n Simple_repeat Simple_repeat 2 22 0 6 1991 286 320 50 22 chr1 184314785 184314877 -12880555 + L1MA9 LINE L1 5834 5928 -384 6 1991 3721 261 105 15 chr1 184314894 184316070 -12879362 + Lx8 LINE L1 6189 7469 -4 6 1991 278 239 0 56 chr1 184316254 184316325 -12879107 - MTEb LTR MaLR -30 349 283 6 1991 4464 133 82 78 chr1 184316341 184317202 -12878230 - RMER19B LTR ERVK -12 890 26 6 1991 1011 62 8 0 chr1 184317203 184317333 -12878099 + B1_Mm SINE Alu 17 147 0 6 1991 216 0 0 0 chr1 184317339 184317363 -12878069 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1991 1319 227 33 11 chr1 184317452 184317728 -12877704 - MTEb LTR MaLR -93 286 5 6 1991 307 303 89 35 chr1 184317925 184318127 -12877305 - LTR16E1 LTR ERVL -52 486 274 6 1991 218 344 85 61 chr1 184318290 184318454 -12876978 + L2 LINE L2 2698 2865 -554 6 1991 434 212 6 0 chr1 184318479 184318639 -12876793 + CT-rich Low_complexity Low_complexity 2 162 0 6 1991 728 155 39 8 chr1 184318642 184318772 -12876660 - B1_Mus2 SINE Alu -7 140 7 6 1991 267 370 39 52 chr1 184318952 184319106 -12876326 - MLT1E1A LTR MaLR -143 537 386 6 1991 665 136 0 63 chr1 184319221 184319347 -12876085 - PB1D9 SINE Alu 0 120 3 6 1991 486 299 0 0 chr1 184319864 184319971 -12875461 - PB1 SINE Alu -20 107 1 6 1991 28 0 0 0 chr1 184320032 184320060 -12875372 + AT_rich Low_complexity Low_complexity 1 28 0 6 1991 537 273 38 8 chr1 184320310 184320443 -12874989 - ID_B1 SINE B4 -1 223 87 6 1991 217 163 19 58 chr1 184321114 184321166 -12874266 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1991 351 0 0 0 chr1 184321184 184321223 -12874209 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1991 188 273 50 38 chr1 184321376 184321456 -12873976 - MIRb SINE MIR -1 267 187 6 1991 577 250 0 18 chr1 184321458 184321572 -12873860 - 7SLRNA srpRNA srpRNA -165 149 38 6 1991 260 275 61 24 chr1 184321598 184321680 -12873752 - PB1D10 SINE Alu -32 85 1 6 1991 311 245 40 8 chr1 184321921 184322020 -12873412 + ID2 SINE ID 2 106 -46 6 1991 1814 106 128 10 chr1 184322095 184322391 -12873041 - Lx LINE L1 0 6654 6324 6 1991 288 0 0 0 chr1 184322396 184322428 -12873004 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1991 482 186 99 31 chr1 184323737 184323898 -12871534 - Lx9 LINE L1 -54 7590 7419 6 1991 206 195 24 0 chr1 184323901 184323942 -12871490 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1991 1352 168 57 25 chr1 184323951 184324232 -12871200 - Lx9 LINE L1 -131 7513 7224 6 1991 351 250 123 14 chr1 184325603 184325865 -12869567 + L1M4 LINE L1 4883 5186 -960 6 1991 271 195 0 0 chr1 184325897 184325938 -12869494 - B1F2 SINE Alu -51 98 58 6 1991 346 303 0 0 chr1 184326550 184326626 -12868806 + B1_Mur1 SINE Alu 58 133 -16 6 1991 216 67 0 0 chr1 184326626 184326656 -12868776 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 6 1991 249 203 125 0 chr1 184326656 184326720 -12868712 + L1M4 LINE L1 5482 5553 -627 6 1991 1011 221 29 5 chr1 184326721 184326926 -12868506 + B3 SINE B2 6 215 -1 6 1991 650 333 32 0 chr1 184327050 184327296 -12868136 + L1ME2z LINE L1 5619 5872 -572 6 1991 396 351 38 0 chr1 184327307 184327492 -12867940 + L1ME2z LINE L1 6119 6310 -2 6 1991 287 326 112 11 chr1 184327724 184327991 -12867441 + L1ME2 LINE L1 5870 6163 -1 6 1991 264 339 72 33 chr1 184328484 184328664 -12866768 - ORR1E LTR MaLR -167 192 6 6 1991 339 345 85 80 chr1 184329640 184330040 -12865392 + L2b LINE L2 2970 3371 -4 6 1991 325 306 98 39 chr1 184330042 184330195 -12865237 + MIRb SINE MIR 102 263 -5 6 1991 834 259 0 17 chr1 184330893 184331070 -12864362 + B3A SINE B2 2 175 -23 6 1991 392 92 31 0 chr1 184331078 184331143 -12864289 + (CATA)n Simple_repeat Simple_repeat 4 70 0 6 1991 335 290 216 41 chr1 184332321 184332663 -12862769 - L2 LINE L2 -627 2792 2391 6 1991 273 252 108 108 chr1 184332779 184332899 -12862533 + B3 SINE B2 28 147 -69 6 1991 249 33 0 0 chr1 184332906 184332936 -12862496 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1991 402 39 0 0 chr1 184334022 184334074 -12861358 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1991 540 318 89 0 chr1 184334146 184334360 -12861072 - MER58B DNA MER1_type -29 312 80 6 1991 244 228 196 56 chr1 184334414 184334521 -12860911 + PB1 SINE Alu 4 125 -2 6 1991 868 121 7 0 chr1 184334715 184334856 -12860576 + URR1B DNA MER1_type 83 224 -1 6 1991 482 163 94 18 chr1 184335351 184335505 -12859927 + L1MA5 LINE L1 6095 6264 -36 6 1991 186 303 218 9 chr1 184335833 184335943 -12859489 + L2a LINE L2 3273 3405 -21 6 1991 516 298 77 30 chr1 184335945 184336180 -12859252 + MER2 DNA MER2_type 1 246 -99 6 1991 215 315 44 22 chr1 184336188 184336279 -12859153 - B4A SINE B4 -108 184 92 6 1991 317 266 13 0 chr1 184336202 184336281 -12859151 - PB1D10 SINE Alu -33 84 5 6 1991 246 170 0 0 chr1 184337120 184337173 -12858259 - B3 SINE B2 0 216 164 6 1991 822 181 42 0 chr1 184337356 184337500 -12857932 + B1_Mur4 SINE Alu 1 150 0 6 1991 270 116 0 0 chr1 184337545 184337588 -12857844 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1991 24 32 0 0 chr1 184337851 184337882 -12857550 + AT_rich Low_complexity Low_complexity 1 31 0 6 1991 385 180 77 22 chr1 184337886 184337977 -12857455 - PB1D10 SINE Alu -1 116 21 6 1991 340 315 79 20 chr1 184337908 184338060 -12857372 - ID_B1 SINE B4 -54 170 10 6 1991 304 276 111 10 chr1 184338092 184338191 -12857241 - PB1 SINE Alu -7 120 12 6 1991 24 0 0 0 chr1 184338200 184338224 -12857208 + AT_rich Low_complexity Low_complexity 1 24 0 6 1991 554 234 0 9 chr1 184338230 184338342 -12857090 - PB1D7 SINE Alu -9 111 1 6 1991 25 90 0 0 chr1 184339232 184339299 -12856133 + GC_rich Low_complexity Low_complexity 1 67 0 6 1991 27 0 0 0 chr1 184340284 184340311 -12855121 + AT_rich Low_complexity Low_complexity 1 27 0 6 1991 222 62 0 0 chr1 184340917 184340949 -12854483 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1991 816 288 5 19 chr1 184341393 184341609 -12853823 - B3 SINE B2 -3 213 1 6 1991 303 234 15 30 chr1 184341678 184341744 -12853688 - ID4 SINE ID -6 77 13 6 1991 483 255 0 45 chr1 184341762 184341918 -12853514 - B1F1 SINE Alu 0 149 1 6 1991 303 193 60 12 chr1 184342103 184342187 -12853245 - L1MB3 LINE L1 -1 6182 6095 6 1991 191 36 36 0 chr1 184343735 184343763 -12851669 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1991 821 169 7 45 chr1 184344446 184344601 -12850831 + B1_Mur4 SINE Alu 2 150 0 6 1991 615 227 66 56 chr1 184345465 184345661 -12849771 + B3A SINE B2 1 198 0 6 1991 1020 212 34 5 chr1 184347027 184347231 -12848201 - B3 SINE B2 -6 210 1 6 1991 261 299 50 43 chr1 184347247 184347387 -12848045 - B1F SINE Alu -8 141 1 6 1991 301 308 67 47 chr1 184347750 184347900 -12847532 - RSINE1 SINE B4 -1 164 12 6 1991 908 87 0 35 chr1 184348556 184348699 -12846733 - B1_Mus1 SINE Alu 0 148 11 6 1991 367 300 0 0 chr1 184349194 184349274 -12846158 - PB1D7 SINE Alu -40 80 1 6 1991 1065 184 70 0 chr1 184349667 184349868 -12845564 - B3 SINE B2 0 216 2 6 1991 969 101 58 0 chr1 184350242 184350381 -12845051 + B1_Mus1 SINE Alu 2 148 0 6 1991 22 0 0 0 chr1 184351225 184351247 -12844185 + AT_rich Low_complexity Low_complexity 1 22 0 7 1991 316 283 41 66 chr1 184351321 184351442 -12843990 - RSINE1 SINE B4 -47 118 1 7 1991 806 225 45 104 chr1 184351465 184351773 -12843659 + B4A SINE B4 1 290 -2 7 1991 475 288 41 0 chr1 184352260 184352406 -12843026 + RSINE1 SINE B4 1 152 -13 7 1991 229 209 0 0 chr1 184352418 184352461 -12842971 + (CATA)n Simple_repeat Simple_repeat 2 44 0 7 1991 25 65 0 0 chr1 184352857 184352903 -12842529 + AT_rich Low_complexity Low_complexity 1 46 0 7 1991 368 202 39 63 chr1 184352972 184353099 -12842333 - B1F SINE Alu 0 149 26 7 1991 252 0 0 0 chr1 184353102 184353130 -12842302 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1991 544 128 0 0 chr1 184353366 184353452 -12841980 + B1_Mus1 SINE Alu 1 86 -62 7 1991 205 100 0 39 chr1 184353455 184353507 -12841925 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 7 1991 285 75 0 0 chr1 184353539 184353579 -12841853 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1991 635 159 88 0 chr1 184353579 184353692 -12841740 - B1_Mur3 SINE Alu -10 139 17 7 1991 303 206 110 0 chr1 184353785 184353858 -12841574 + B3 SINE B2 70 150 -66 7 1991 251 188 181 35 chr1 184354007 184354123 -12841309 - L1MB7 LINE L1 -262 5922 5790 7 1991 29 47 0 0 chr1 184354310 184354353 -12841079 + AT_rich Low_complexity Low_complexity 1 43 0 7 1991 217 238 0 0 chr1 184354353 184354395 -12841037 - PB1D10 SINE Alu -41 76 35 7 1991 23 0 0 0 chr1 184354977 184355000 -12840432 + AT_rich Low_complexity Low_complexity 1 23 0 7 1991 215 274 179 0 chr1 184355056 184355162 -12840270 + MER5A DNA MER1_type 19 143 -46 7 1991 420 254 28 42 chr1 184355934 184356078 -12839354 + MIR SINE MIR 1 142 -120 7 1991 247 263 178 0 chr1 184356258 184356410 -12839022 - L2a LINE L2 -235 3191 3013 7 1991 294 50 0 0 chr1 184357848 184357888 -12837544 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1991 749 235 20 0 chr1 184358566 184358715 -12836717 - 7SLRNA srpRNA srpRNA -162 152 1 7 1991 456 171 355 19 chr1 184359468 184359568 -12835864 + B1_Mus1 SINE Alu 3 140 -8 7 1991 183 100 0 0 chr1 184359568 184359598 -12835834 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1991 431 248 200 0 chr1 184359682 184359827 -12835605 - MTE2b LTR MaLR 0 379 206 7 1991 188 271 144 10 chr1 184360014 184360111 -12835321 - L2c LINE L2 -16 3371 3262 7 1991 443 18 0 18 chr1 184360221 184360278 -12835154 + (TCCCC)n Simple_repeat Simple_repeat 2 57 0 7 1991 577 307 28 74 chr1 184360911 184361196 -12834236 + B4A SINE B4 1 272 -20 7 1991 944 277 78 54 chr1 184362461 184362831 -12832601 - MTE2b LTR MaLR 0 379 1 7 1991 282 150 183 21 chr1 184363378 184363500 -12831932 - MIRc SINE MIR -32 176 33 7 1991 28 29 0 0 chr1 184364812 184364847 -12830585 + AT_rich Low_complexity Low_complexity 1 35 0 7 1991 186 71 0 0 chr1 184364852 184364880 -12830552 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1991 409 301 50 22 chr1 184364924 184365063 -12830369 - RSINE1 SINE B4 -21 144 2 7 1991 648 203 57 43 chr1 184365677 184365871 -12829561 - B3A SINE B2 -6 187 1 7 1991 441 254 8 24 chr1 184366428 184366553 -12828879 - B1F2 SINE Alu 0 149 27 7 1991 474 274 0 8 chr1 184367316 184367441 -12827991 - PB1 SINE Alu -2 125 2 7 1991 769 158 19 0 chr1 184367847 184367999 -12827433 - B2_Mm2 SINE B2 -47 169 2 7 1991 331 266 13 0 chr1 184368015 184368094 -12827338 + B4A SINE B4 1 80 -212 7 1991 27 62 0 0 chr1 184368739 184368787 -12826645 + AT_rich Low_complexity Low_complexity 1 48 0 7 1991 245 263 55 88 chr1 184368883 184369031 -12826401 - MIR SINE MIR -75 193 50 7 1991 390 21 0 0 chr1 184369072 184369119 -12826313 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 7 1991 933 136 0 0 chr1 184369119 184369272 -12826160 + (TC)n Simple_repeat Simple_repeat 2 155 0 7 1991 1449 71 5 0 chr1 184369272 184369456 -12825976 - B2_Mm1a SINE B2 -7 186 2 7 1991 461 275 82 30 chr1 184369502 184369637 -12825795 - RSINE1 SINE B4 -2 163 22 7 1991 431 280 80 40 chr1 184369670 184369871 -12825561 + B4A SINE B4 1 209 -83 7 1991 1242 266 56 11 chr1 184369875 184370248 -12825184 + Lx8 LINE L1 6946 7335 -138 7 1991 697 298 27 11 chr1 184370250 184370433 -12824999 + B3A SINE B2 8 193 -5 7 1991 236 316 0 50 chr1 184370553 184370633 -12824799 + B4A SINE B4 217 292 0 7 1991 250 246 14 14 chr1 184373246 184373316 -12822116 + PB1D10 SINE Alu 42 111 -6 7 1991 432 0 0 0 chr1 184373748 184373796 -12821636 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1991 387 237 12 21 chr1 184373925 184374032 -12821400 - PB1D9 SINE Alu -7 113 8 7 1991 248 241 169 0 chr1 184375509 184375592 -12819840 - PB1D10 SINE Alu -3 114 18 7 1991 186 43 0 0 chr1 184375796 184375819 -12819613 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1991 1092 58 50 0 chr1 184375819 184375958 -12819474 - B1_Mus2 SINE Alu 0 147 2 7 1991 280 281 0 53 chr1 184376026 184376120 -12819312 - B4A SINE B4 -1 291 203 7 1991 374 270 35 55 chr1 184376901 184377046 -12818386 - RSINE1 SINE B4 -21 144 3 7 1991 662 218 41 164 chr1 184377324 184377642 -12817790 - MTE2a LTR MaLR -100 279 1 7 1991 26 30 0 0 chr1 184378371 184378404 -12817028 + AT_rich Low_complexity Low_complexity 1 33 0 7 1991 1191 204 0 5 chr1 184379885 184380102 -12815330 - B3 SINE B2 0 216 1 7 1991 249 296 0 14 chr1 184380176 184380248 -12815184 + (CAGGG)n Simple_repeat Simple_repeat 2 72 0 7 1991 8005 33 3 1 chr1 184380563 184381497 -12813935 - L1Md_F2 LINE L1 -2 6580 5645 7 1991 622 266 56 0 chr1 184381845 184381988 -12813444 + RSINE1 SINE B4 8 158 -7 7 1991 246 95 0 0 chr1 184382035 184382077 -12813355 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1991 438 20 0 0 chr1 184382077 184382128 -12813304 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1991 188 259 0 115 chr1 184382292 184382353 -12813079 + MIRb SINE MIR 37 93 -175 7 1991 460 285 32 0 chr1 184382560 184382683 -12812749 + B1F1 SINE Alu 1 127 -22 7 1991 243 315 41 0 chr1 184383202 184383275 -12812157 - B1F SINE Alu -73 76 1 7 1991 288 130 0 0 chr1 184383500 184383546 -12811886 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 7 1991 665 63 14 40 chr1 184383546 184383694 -12811738 - RMER17A2 LTR ERVK -397 509 366 7 1991 344 344 32 7 chr1 184384236 184384391 -12811041 - MER44B DNA MER2_type -296 254 96 7 1991 192 77 0 0 chr1 184385056 184385082 -12810350 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1991 666 225 160 27 chr1 184385305 184385492 -12809940 + B3 SINE B2 2 213 -3 7 1991 212 0 36 0 chr1 184386483 184386511 -12808921 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1991 218 181 133 40 chr1 184386789 184386864 -12808568 - ID4_ SINE ID 0 83 2 7 1991 675 202 57 17 chr1 184387235 184387411 -12808021 - B3 SINE B2 -32 184 2 7 1991 261 75 0 0 chr1 184387649 184387689 -12807743 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1991 1977 63 8 0 chr1 184387695 184387947 -12807485 - L1_Mus1 LINE L1 0 6567 6314 7 1991 495 283 4 13 chr1 184389180 184389304 -12806128 + B3 SINE B2 15 138 -57 7 1991 227 31 0 30 chr1 184389304 184389337 -12806095 + (CATA)n Simple_repeat Simple_repeat 4 35 0 7 1991 311 292 86 93 chr1 184389337 184389363 -12806069 + B2_Mm2 SINE B2 139 163 -32 7 1991 231 265 0 0 chr1 184389531 184389580 -12805852 + B1F SINE Alu 12 60 -89 7 1991 308 212 30 15 chr1 184389537 184389604 -12805828 + ID_B1 SINE B4 99 166 -58 7 1991 215 192 36 71 chr1 184390151 184390207 -12805225 - B3A SINE B2 -144 54 1 7 1991 372 227 91 0 chr1 184390279 184390367 -12805065 - PB1D10 SINE Alu -11 106 11 7 1991 254 241 113 35 chr1 184390623 184390765 -12804667 - L1MA8 LINE L1 -74 6217 6065 7 1991 448 230 60 0 chr1 184391375 184391475 -12803957 + PB1D10 SINE Alu 12 117 0 7 1991 637 250 28 6 chr1 184392796 184392973 -12802459 - B3A SINE B2 -17 181 1 7 1991 216 0 0 0 chr1 184393231 184393255 -12802177 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1991 350 21 0 0 chr1 184393255 184393303 -12802129 - B1_Mm SINE Alu 0 147 100 7 1991 325 261 181 14 chr1 184393492 184393636 -12801796 + MLT1D LTR MaLR 130 297 -208 7 1991 1207 34 0 7 chr1 184393818 184393966 -12801466 - B1_Mus1 SINE Alu 0 148 2 7 1991 1479 199 157 8 chr1 184394331 184394725 -12800707 - RMER5 LTR ERV1 -4 530 78 7 1991 216 97 0 0 chr1 184394756 184394787 -12800645 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1991 873 172 25 0 chr1 184396141 184396304 -12799128 - B3 SINE B2 -1 215 49 7 1991 430 245 39 0 chr1 184396784 184396886 -12798546 + ID_B1 SINE B4 104 209 -15 7 1991 268 177 32 0 chr1 184397748 184397810 -12797622 - PB1D10 SINE Alu -6 111 48 7 1991 759 173 43 0 chr1 184398622 184398761 -12796671 + B1_Mur2 SINE Alu 5 149 0 7 1991 198 0 0 0 chr1 184399100 184399122 -12796310 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 7 1991 283 269 15 0 chr1 184399534 184399601 -12795831 - ID4_ SINE ID -1 82 15 7 1991 1076 204 14 5 chr1 184400576 184400793 -12794639 - URR1B DNA MER1_type 0 225 7 7 1991 254 29 29 0 chr1 184401024 184401059 -12794373 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1991 21 36 0 0 chr1 184401065 184401093 -12794339 + AT_rich Low_complexity Low_complexity 1 28 0 7 1991 431 103 327 27 chr1 184401105 184401215 -12794217 - B2_Mm2 SINE B2 -6 189 47 8 1991 1115 97 24 0 chr1 184401285 184401450 -12793982 - B2_Mm1t SINE B2 -22 171 3 8 1991 279 275 22 11 chr1 184401454 184401546 -12793886 - B2_Mm1t SINE B2 -93 100 8 8 1991 409 232 61 0 chr1 184401555 184401654 -12793778 - B3 SINE B2 -46 170 66 8 1991 297 271 70 40 chr1 184401847 184401947 -12793485 + MLT1J2 LTR MaLR 50 152 -296 8 1991 387 0 0 0 chr1 184402280 184402323 -12793109 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1991 306 0 0 0 chr1 184402323 184402357 -12793075 + (CAG)n Simple_repeat Simple_repeat 3 36 0 8 1991 233 270 0 0 chr1 184402400 184402463 -12792969 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1991 422 136 0 0 chr1 184402503 184402569 -12792863 - ID4 SINE ID -13 70 5 8 1991 407 237 26 17 chr1 184403647 184403763 -12791669 - PB1D10 SINE Alu 0 117 1 8 1991 276 282 0 0 chr1 184404117 184404188 -12791244 + MER3 DNA MER1_type 1 71 -138 8 1991 263 278 83 0 chr1 184404361 184404433 -12790999 - B1_Mus1 SINE Alu -61 87 10 8 1991 305 280 0 27 chr1 184404707 184404817 -12790615 + (TG)n Simple_repeat Simple_repeat 2 108 0 8 1991 577 311 66 51 chr1 184404843 184405100 -12790332 - B4A SINE B4 -30 262 2 8 1991 243 79 0 0 chr1 184405978 184406016 -12789416 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1991 1084 144 27 0 chr1 184406016 184406203 -12789229 - B2_Mm1t SINE B2 0 193 2 8 1991 491 274 0 26 chr1 184406244 184406360 -12789072 + B1F SINE Alu 8 120 -29 8 1991 426 318 50 38 chr1 184406371 184406531 -12788901 + RSINE1 SINE B4 4 165 0 8 1991 198 103 0 0 chr1 184406615 184406644 -12788788 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1991 210 369 44 33 chr1 184407020 184407202 -12788230 - MIRb SINE MIR -58 210 27 8 1991 648 185 63 37 chr1 184407744 184407935 -12787497 + Lx4B LINE L1 6863 7058 0 8 1991 443 191 131 19 chr1 184408911 184409018 -12786414 - ID_B1 SINE B4 0 224 106 8 1991 707 255 6 0 chr1 184409042 184409199 -12786233 - ID_B1 SINE B4 0 224 67 8 1991 243 0 0 0 chr1 184410149 184410176 -12785256 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1991 227 224 20 0 chr1 184410183 184410232 -12785200 - tRNA-Ala-GCY_ tRNA tRNA -24 51 2 8 1991 239 255 20 0 chr1 184410188 184410239 -12785193 - ID4_ SINE ID -31 52 1 8 1991 218 247 50 54 chr1 184413015 184413107 -12782325 + MIRb SINE MIR 98 199 -9 8 1991 603 0 0 0 chr1 184413676 184413743 -12781689 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 1991 186 43 0 0 chr1 184414012 184414035 -12781397 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1991 453 254 25 8 chr1 184414736 184414855 -12780577 - ID_B1 SINE B4 -1 223 103 8 1991 246 286 230 17 chr1 184415655 184415829 -12779603 + MIR SINE MIR 19 229 -33 8 1991 360 0 0 0 chr1 184415995 184416035 -12779397 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 8 1991 800 71 0 9 chr1 184416035 184416148 -12779284 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 8 1991 765 153 14 7 chr1 184416152 184416297 -12779135 - B1_Mur4 SINE Alu -4 146 1 8 1991 222 339 21 71 chr1 184416940 184417080 -12778352 + MIR SINE MIR 26 158 -104 8 1991 470 61 15 0 chr1 184417181 184417247 -12778185 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 8 1991 1089 68 14 0 chr1 184417247 184417393 -12778039 - B1_Mus1 SINE Alu 0 148 1 8 1991 326 308 0 78 chr1 184417603 184417719 -12777713 - PB1D10 SINE Alu 0 117 11 8 1992 469 215 160 8 chr1 184418618 184418749 -12776683 - RSINE1 SINE B4 -11 154 4 8 1992 21 0 0 0 chr1 184419832 184419853 -12775579 + AT_rich Low_complexity Low_complexity 1 21 0 8 1992 230 156 0 0 chr1 184421646 184421691 -12773741 + (CAG)n Simple_repeat Simple_repeat 3 47 0 8 1992 1249 84 22 6 chr1 184423875 184424054 -12771378 + B2_Mm2 SINE B2 1 182 -13 8 1992 329 51 533 30 chr1 184424095 184424185 -12771247 + B2_Mm2 SINE B2 47 181 -14 8 1992 770 208 0 13 chr1 184425404 184425555 -12769877 - B1_Mur1 SINE Alu 0 149 1 8 1992 382 228 44 51 chr1 184425694 184425820 -12769612 - ORR1C2 LTR MaLR -262 122 1 8 1992 321 322 0 9 chr1 184425959 184426075 -12769357 - PB1D10 SINE Alu -2 115 1 8 1992 350 364 32 26 chr1 184427800 184427989 -12767443 + L1MC LINE L1 4509 4698 -1448 8 1992 504 235 61 0 chr1 184428184 184428299 -12767133 + RSINE1 SINE B4 14 135 -30 8 1992 453 66 0 0 chr1 184428815 184428876 -12766556 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1992 262 350 7 14 chr1 184428896 184429041 -12766391 + (TG)n Simple_repeat Simple_repeat 1 144 0 8 1992 375 253 123 53 chr1 184429100 184429271 -12766161 - B4 SINE B4 0 292 110 8 1992 617 230 8 16 chr1 184429395 184429523 -12765909 - B1F SINE Alu 0 149 23 8 1992 785 262 149 68 chr1 184433693 184434090 -12761342 + RLTR28B LTR ERVL 1 429 -52 8 1992 320 343 38 0 chr1 184435988 184436093 -12759339 + PB1D10 SINE Alu 3 111 -6 8 1992 398 262 47 16 chr1 184436102 184436230 -12759202 - MER3 DNA MER1_type -77 132 1 8 1992 205 339 69 52 chr1 184436449 184436623 -12758809 - MIR3 SINE MIR -2 206 30 8 1992 793 54 18 0 chr1 184437105 184437216 -12758216 + (TTTTC)n Simple_repeat Simple_repeat 2 114 0 8 1992 759 138 0 0 chr1 184437246 184437384 -12758048 + (TTC)n Simple_repeat Simple_repeat 1 138 0 8 1992 479 274 26 0 chr1 184437425 184437538 -12757894 - PB1D10 SINE Alu 0 117 2 8 1992 1206 60 0 0 chr1 184437568 184437719 -12757713 + L1Md_F2 LINE L1 5436 5586 -297 8 1992 7891 39 7 4 chr1 184437719 184438700 -12756732 + L1Md_F2 LINE L1 5587 6570 -12 8 1992 917 306 65 8 chr1 184438713 184439117 -12756315 + L1MC3 LINE L1 7392 7785 0 8 1992 339 65 0 0 chr1 184439662 184439708 -12755724 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1992 229 208 0 77 chr1 184440273 184440325 -12755107 - ID4_ SINE ID -16 67 20 8 1992 333 0 0 0 chr1 184440901 184440938 -12754494 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 8 1992 1040 74 0 0 chr1 184440938 184441073 -12754359 - B1_Mus1 SINE Alu -12 136 2 8 1992 195 322 64 43 chr1 184443015 184443109 -12752323 - MIR SINE MIR -63 145 50 8 1992 252 320 26 84 chr1 184443784 184443972 -12751460 + MIR SINE MIR 20 201 -67 8 1992 307 141 31 0 chr1 184444345 184444409 -12751023 + CT-rich Low_complexity Low_complexity 1 66 0 8 1992 359 73 18 0 chr1 184444580 184444635 -12750797 + (TTA)n Simple_repeat Simple_repeat 2 57 0 8 1992 239 269 0 0 chr1 184444904 184444956 -12750476 + L2a LINE L2 3374 3425 -1 8 1992 528 249 11 43 chr1 184444973 184445141 -12750291 + MTD LTR MaLR 220 400 -19 8 1992 258 32 0 0 chr1 184445222 184445253 -12750179 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 8 1992 184 237 0 0 chr1 184445285 184445323 -12750109 + MIR SINE MIR 217 254 -8 8 1992 306 73 0 0 chr1 184445323 184445364 -12750068 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 8 1992 391 284 0 57 chr1 184445704 184445827 -12749605 - PB1D10 SINE Alu -1 116 1 8 1992 337 233 0 52 chr1 184445929 184446006 -12749426 - ID_B1 SINE B4 -9 215 143 8 1992 490 304 27 7 chr1 184446061 184446210 -12749222 - RSINE1 SINE B4 -12 153 2 8 1992 764 243 13 13 chr1 184446211 184446361 -12749071 - ID_B1 SINE B4 -68 156 7 8 1992 24 0 0 0 chr1 184447553 184447577 -12747855 + GC_rich Low_complexity Low_complexity 1 24 0 8 1992 233 289 19 0 chr1 184448032 184448099 -12747333 - MIRb SINE MIR -88 174 106 8 1992 206 75 50 0 chr1 184448201 184448241 -12747191 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1992 427 289 48 113 chr1 184448530 184448760 -12746672 + MER20 DNA MER1_type 5 219 0 8 1992 296 266 139 7 chr1 184448769 184448913 -12746519 + LTR37A LTR ERV1 62 224 -202 8 1992 604 184 9 18 chr1 184449227 184449338 -12746094 + B1F2 SINE Alu 40 149 0 8 1992 268 207 48 12 chr1 184449364 184449447 -12745985 + LTR37A LTR ERV1 320 405 -21 8 1992 457 314 96 104 chr1 184449493 184449898 -12745534 + MER92A LTR ERV1 1 402 -10 8 1992 741 12 0 0 chr1 184450735 184450821 -12744611 + (GA)n Simple_repeat Simple_repeat 1 86 0 8 1992 603 294 30 82 chr1 184451273 184451577 -12743855 + ORR1E LTR MaLR 20 307 -52 8 1992 1293 255 43 35 chr1 184452056 184452377 -12743055 + MTD LTR MaLR 5 321 -98 8 1992 1769 144 181 15 chr1 184452377 184452715 -12742717 + ORR1B1 LTR MaLR 1 394 0 8 1992 1293 255 43 35 chr1 184452715 184452791 -12742641 + MTD LTR MaLR 322 405 -14 8 1992 860 281 27 55 chr1 184453521 184453777 -12741655 - MTEa LTR MaLR -130 249 1 8 1992 241 300 36 36 chr1 184454111 184454194 -12741238 - MTEb LTR MaLR -3 376 294 8 1992 3200 66 2 2 chr1 184454266 184454662 -12740770 + MTA_Mm LTR MaLR 1 396 0 8 1992 1267 259 57 27 chr1 184454781 184455115 -12740317 - ORR1D2 LTR MaLR -2 368 25 8 1992 2039 185 25 6 chr1 184455117 184455482 -12739950 + ORR1C1 LTR MaLR 1 372 -6 8 1992 597 234 206 0 chr1 184455628 184455803 -12739629 + B3 SINE B2 1 211 -5 8 1992 193 400 0 0 chr1 184456133 184456208 -12739224 + MIRb SINE MIR 92 166 -102 8 1992 186 274 19 19 chr1 184456358 184456410 -12739022 - L3 LINE CR1 -6 4483 4432 8 1992 360 0 0 0 chr1 184456589 184456629 -12738803 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1992 1187 232 132 19 chr1 184456660 184456985 -12738447 + MTD LTR MaLR 58 419 0 8 1992 522 216 27 9 chr1 184456997 184457109 -12738323 + PB1D7 SINE Alu 1 114 -6 8 1992 242 270 16 16 chr1 184457914 184457978 -12737454 + CT-rich Low_complexity Low_complexity 4 67 0 8 1992 588 290 55 73 chr1 184458771 184459046 -12736386 - B4A SINE B4 -22 270 1 8 1992 243 289 19 0 chr1 184459366 184459418 -12736014 + B1F2 SINE Alu 2 54 -95 8 1992 234 293 86 0 chr1 184459367 184459425 -12736007 + ID_B1 SINE B4 84 146 -78 9 1992 360 0 0 0 chr1 184459430 184459470 -12735962 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1992 423 0 0 0 chr1 184459470 184459516 -12735916 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 1992 1041 289 117 32 chr1 184459517 184460390 -12735042 - L1M2 LINE L1 -92 5788 4815 9 1992 626 242 168 9 chr1 184460422 184460682 -12734750 + L1_Mur3 LINE L1 3901 4229 -1914 9 1992 1705 221 14 42 chr1 184460683 184461038 -12734394 + MTEb LTR MaLR 35 379 0 9 1992 1888 294 79 85 chr1 184461061 184461725 -12733707 - L1M2 LINE L1 -2227 3916 3269 9 1992 189 0 0 0 chr1 184461725 184461746 -12733686 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 9 1992 1888 294 79 85 chr1 184461746 184462381 -12733051 - L1M2 LINE L1 -2875 3268 2626 9 1992 2077 166 81 41 chr1 184462457 184463249 -12732183 + ORR1D1-int LTR MaLR 880 1764 -28 9 1992 360 0 0 0 chr1 184463268 184463308 -12732124 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1992 4194 225 108 36 chr1 184464377 184465642 -12729790 + RMER12 LTR ERVK 1 1848 0 9 1992 313 273 60 136 chr1 184465852 184466051 -12729381 - L1M2 LINE L1 -3163 2980 2797 9 1992 195 282 0 40 chr1 184466079 184466153 -12729279 + L2c LINE L2 3315 3385 -2 9 1992 2281 99 15 6 chr1 184466278 184466602 -12728830 + ORR1A2 LTR MaLR 1 327 0 9 1992 351 295 117 34 chr1 184466952 184467131 -12728301 - MER31A LTR ERV1 -2 483 290 9 1992 792 296 86 71 chr1 184467204 184467542 -12727890 - MTEa LTR MaLR -36 343 1 9 1992 403 248 68 8 chr1 184467542 184467659 -12727773 - MER31A LTR ERV1 -241 244 121 9 1992 252 59 0 0 chr1 184467665 184467699 -12727733 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 9 1992 218 105 26 0 chr1 184467699 184467737 -12727695 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1992 513 231 51 58 chr1 184467769 184467860 -12727572 - RSINE1 SINE B4 0 165 73 9 1992 982 168 115 29 chr1 184467860 184468068 -12727364 + URR1A DNA MER1_type 1 226 0 9 1992 513 231 51 58 chr1 184468068 184468114 -12727318 - RSINE1 SINE B4 -93 72 29 9 1992 2661 87 5 0 chr1 184468176 184468545 -12726887 - L1_Mm LINE L1 -3463 2420 2050 9 1992 3752 95 2 8 chr1 184468547 184469055 -12726377 + L1_Mus2 LINE L1 6062 6566 0 9 1992 339 197 45 0 chr1 184469055 184469121 -12726311 - MER31A LTR ERV1 -414 71 3 9 1992 375 183 52 25 chr1 184469903 184470195 -12725237 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 9 1992 410 151 57 57 chr1 184470213 184470389 -12725043 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 9 1992 374 299 11 0 chr1 184470470 184470557 -12724875 + MLT1D LTR MaLR 1 88 -417 9 1992 339 329 145 0 chr1 184471248 184471400 -12724032 - Lx8 LINE L1 -179 7294 7121 9 1992 676 328 68 26 chr1 184471456 184471785 -12723647 - Lx7 LINE L1 -41 7432 7074 9 1992 2244 137 49 6 chr1 184471785 184472151 -12723281 - RLTR14 LTR ERV1 0 382 1 9 1992 676 328 68 26 chr1 184472151 184472250 -12723182 - Lx7 LINE L1 -388 7085 6985 9 1992 243 378 50 29 chr1 184472741 184472880 -12722552 + LTR86B2 LTR ERVL 298 439 -48 9 1992 414 100 0 0 chr1 184473696 184473756 -12721676 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1992 228 278 68 14 chr1 184473804 184473877 -12721555 + MTEa LTR MaLR 289 365 -14 9 1992 557 336 68 56 chr1 184474128 184474683 -12720749 - L1MC4 LINE L1 -255 7787 7226 9 1992 1795 152 79 20 chr1 184474683 184475026 -12720406 + RLTR14 LTR ERV1 1 363 -19 9 1992 1974 87 56 86 chr1 184475034 184475373 -12720059 + ORR1A4 LTR MaLR 1 329 0 9 1992 379 309 147 44 chr1 184475382 184475771 -12719661 - L1MC4 LINE L1 -817 7225 6797 9 1992 256 270 50 70 chr1 184477498 184477727 -12717705 + RMER17D LTR ERVK 240 461 -428 9 1992 1184 62 0 0 chr1 184477727 184477872 -12717560 - B1_Mus2 SINE Alu 0 147 3 9 1992 256 270 50 70 chr1 184477872 184477901 -12717531 + RMER17D LTR ERVK 462 493 -396 9 1992 338 320 101 19 chr1 184478127 184478334 -12717098 - L1MC4 LINE L1 -1459 6583 6360 9 1992 452 214 0 11 chr1 184478432 184478522 -12716910 - 5S rRNA rRNA -31 90 2 9 1992 236 250 217 0 chr1 184479442 184479502 -12715930 + PB1D10 SINE Alu 1 73 -44 9 1992 309 286 20 0 chr1 184480022 184480120 -12715312 + L1MEe LINE L1 960 1059 -3795 9 1992 362 217 22 137 chr1 184480291 184480430 -12715002 + URR1B DNA MER1_type 67 189 -36 9 1992 531 306 190 6 chr1 184480509 184480867 -12714565 + L1MC2 LINE L1 5891 6314 -30 9 1992 319 275 6 108 chr1 184481343 184481510 -12713922 + L1MB3 LINE L1 5961 6110 -73 9 1992 724 243 139 128 chr1 184481514 184481882 -12713550 - MTE2a LTR MaLR -1 378 7 9 1992 337 314 90 30 chr1 184482083 184482283 -12713149 - L1M5 LINE L1 -3515 2631 2420 9 1992 1301 254 77 40 chr1 184482497 184482747 -12712685 + MTD LTR MaLR 3 274 -145 9 1992 1257 67 78 0 chr1 184482747 184482927 -12712505 - B2_Mm2 SINE B2 0 195 2 9 1992 1301 254 77 40 chr1 184482927 184483078 -12712354 + MTD LTR MaLR 275 418 -1 9 1992 327 49 0 0 chr1 184483691 184483732 -12711700 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 9 1992 668 206 87 0 chr1 184483733 184483859 -12711573 - B1_Mur2 SINE Alu -9 140 4 9 1992 971 201 69 0 chr1 184483875 184484064 -12711368 - B3 SINE B2 -11 205 4 9 1992 288 278 65 22 chr1 184484064 184484149 -12711283 - L1MC5 LINE L1 -856 7105 7015 9 1992 459 0 0 0 chr1 184484593 184484644 -12710788 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1992 1123 71 226 16 chr1 184484762 184484948 -12710484 + URR1A DNA MER1_type 2 226 0 9 1992 392 241 0 25 chr1 184485140 184485221 -12710211 - B1_Mur1 SINE Alu 0 149 71 9 1992 532 156 9 9 chr1 184485284 184485394 -12710038 + (CAA)n Simple_repeat Simple_repeat 2 111 0 9 1992 1422 50 0 22 chr1 184486039 184486222 -12709210 - B2_Mm2 SINE B2 -15 180 2 9 1992 644 305 160 50 chr1 184486415 184486777 -12708655 + MLT1F LTR MaLR 147 548 0 9 1992 188 347 141 76 chr1 184487133 184487353 -12708079 - L2 LINE L2 -1313 2106 1858 9 1992 316 307 27 74 chr1 184487353 184487501 -12707931 + B1F SINE Alu 2 142 -7 9 1992 188 347 141 76 chr1 184487501 184487513 -12707919 - L2 LINE L2 -1562 1857 1852 9 1992 303 93 0 0 chr1 184487513 184487556 -12707876 + (TGG)n Simple_repeat Simple_repeat 2 44 0 9 1992 188 347 141 76 chr1 184487556 184487584 -12707848 - L2 LINE L2 -1568 1851 1828 9 1992 377 306 45 0 chr1 184487588 184487745 -12707687 - HAL1-2a_MD LINE L1 -517 2507 2344 9 1992 365 235 9 125 chr1 184488302 184488414 -12707018 - PB1D10 SINE Alu -2 115 17 9 1992 360 239 96 17 chr1 184488776 184488891 -12706541 - L1M5 LINE L1 -2950 3196 3073 9 1992 551 85 0 12 chr1 184488895 184488978 -12706454 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 9 1992 345 324 57 0 chr1 184488991 184489096 -12706336 - MER21B LTR ERV1 -727 136 26 9 1992 276 261 13 127 chr1 184489099 184489178 -12706254 - MER21B LTR ERV1 -755 108 39 9 1992 504 42 30 99 chr1 184489213 184489344 -12706088 + (CA)n Simple_repeat Simple_repeat 2 123 0 9 1992 3675 44 5 2 chr1 184489940 184490375 -12705057 - RLTR10C LTR ERVK 0 436 1 9 1992 417 39 0 0 chr1 184490915 184490966 -12704466 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 9 1992 294 307 100 22 chr1 184491007 184491097 -12704335 - B1F SINE Alu -52 97 1 9 1992 480 287 149 27 chr1 184491108 184491330 -12704102 - L1MB7 LINE L1 -15 6169 5921 9 1992 467 252 35 84 chr1 184491341 184491484 -12703948 + MTEa LTR MaLR 3 138 -241 9 1992 352 247 188 12 chr1 184491484 184491501 -12703931 + MLT2B3 LTR ERVL 3 190 -364 9 1992 395 275 0 0 chr1 184491781 184491872 -12703560 - PB1D10 SINE Alu -21 96 6 9 1992 333 292 10 24 chr1 184492038 184492175 -12703257 - L1MB7 LINE L1 -537 5641 5511 9 1992 216 0 0 0 chr1 184492703 184492727 -12702705 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1992 207 0 0 0 chr1 184492953 184492976 -12702456 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1992 216 349 119 45 chr1 184493164 184493560 -12701872 - L2b LINE L2 -1 3374 2950 9 1992 482 250 9 18 chr1 184494263 184494373 -12701059 - ID_B1 SINE B4 0 224 116 9 1992 248 246 0 58 chr1 184494365 184494434 -12700998 - B4A SINE B4 -227 65 1 9 1992 378 254 69 31 chr1 184494373 184494392 -12701040 - B1F1 SINE Alu 0 148 15 9 1992 431 314 49 64 chr1 184494522 184494584 -12700848 - MLT1D LTR MaLR 0 505 440 9 1992 819 246 43 14 chr1 184494584 184494794 -12700638 + B3 SINE B2 1 216 0 9 1992 431 314 49 64 chr1 184494794 184494935 -12700497 - MLT1D LTR MaLR -66 439 305 9 1992 226 284 93 55 chr1 184495600 184495732 -12699700 + MIR3 SINE MIR 31 154 -54 9 1992 358 250 125 25 chr1 184495981 184496141 -12699291 - L1M3 LINE L1 -703 5468 5293 9 1992 300 53 0 0 chr1 184496185 184496223 -12699209 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1992 306 222 0 0 chr1 184496224 184496278 -12699154 - HAL1-3A_ME LINE L1 -846 2012 1959 9 1992 781 284 30 67 chr1 184496331 184496659 -12698773 - L1MA4 LINE L1 -360 5940 5625 9 1992 421 371 24 29 chr1 184497309 184497517 -12697915 + MIRb SINE MIR 3 209 -59 9 1992 29 28 0 0 chr1 184498456 184498492 -12696940 + AT_rich Low_complexity Low_complexity 1 36 0 9 1992 545 286 21 21 chr1 184498582 184498771 -12696661 - Lx8 LINE L1 -390 7083 6895 9 1992 355 164 33 0 chr1 184498795 184498856 -12696576 - Lx8 LINE L1 -662 6811 6749 9 1992 571 102 43 14 chr1 184499120 184499259 -12696173 + (TG)n Simple_repeat Simple_repeat 1 143 0 9 1992 383 148 58 25 chr1 184499334 184499581 -12695851 + (TG)n Simple_repeat Simple_repeat 1 255 0 9 1992 231 147 78 10 chr1 184499599 184499702 -12695730 + (TG)n Simple_repeat Simple_repeat 1 110 0 9 1992 546 230 96 57 chr1 184499702 184499859 -12695573 - RSINE1 SINE B4 0 165 3 9 1992 288 237 0 38 chr1 184500374 184500453 -12694979 + CT-rich Low_complexity Low_complexity 2 77 0 1 1992 514 311 28 42 chr1 184503031 184503246 -12692186 - ID_B1 SINE B4 -4 220 9 2 1992 21 0 0 0 chr1 184503256 184503277 -12692155 + AT_rich Low_complexity Low_complexity 1 21 0 3 1992 401 169 42 0 chr1 184503478 184503549 -12691883 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 4 1992 414 0 0 0 chr1 184503861 184503907 -12691525 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1992 441 0 0 0 chr1 184503907 184503955 -12691477 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1992 281 200 0 28 chr1 184504025 184504097 -12691335 + C-rich Low_complexity Low_complexity 5 74 0 7 1992 22 70 0 0 chr1 184505063 184505106 -12690326 + AT_rich Low_complexity Low_complexity 1 43 0 8 1992 241 329 12 12 chr1 184505128 184505208 -12690224 - ID4_ SINE ID -2 81 2 9 1992 378 297 39 15 chr1 184505241 184505371 -12690061 - ID_B1 SINE B4 -5 219 87 1 1992 308 229 16 91 chr1 184505699 184505886 -12689546 + (CATCC)n Simple_repeat Simple_repeat 5 177 0 1 1992 209 190 0 65 chr1 184509242 184509261 -12686171 + polypyrimidine Low_complexity Low_complexity 42 60 0 1 1992 954 91 0 0 chr1 184509261 184509404 -12686028 + (TCCC)n Simple_repeat Simple_repeat 3 145 0 1 1992 209 190 0 65 chr1 184509404 184509446 -12685986 + polypyrimidine Low_complexity Low_complexity 4 41 0 1 1992 311 260 26 0 chr1 184510605 184510682 -12684750 + Charlie4a DNA MER1_type 422 500 -8 1 1992 223 298 11 56 chr1 184511739 184511828 -12683604 + L2a LINE L2 3182 3266 -160 1 1992 197 322 42 90 chr1 184513713 184513880 -12681552 - L2 LINE L2 -433 2986 2828 1 1992 282 269 151 19 chr1 184514376 184514482 -12680950 - MLT1A LTR MaLR 0 374 255 1 1992 212 312 103 10 chr1 184515249 184515346 -12680086 - MIRb SINE MIR 0 268 163 1 1992 262 256 42 13 chr1 184515621 184515727 -12679705 + MIRc SINE MIR 63 173 -103 2 1992 253 287 104 37 chr1 184516364 184516498 -12678934 - LTR81B LTR ERV1? -68 1325 1183 2 1992 227 309 14 29 chr1 184516873 184516943 -12678489 - LTR81B LTR ERV1? -1044 109 41 2 1992 23 86 0 0 chr1 184517544 184517602 -12677830 + AT_rich Low_complexity Low_complexity 1 58 0 2 1992 200 337 146 0 chr1 184517732 184517821 -12677611 - MIR SINE MIR -63 199 98 2 1992 198 0 0 0 chr1 184518471 184518493 -12676939 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1992 296 242 126 42 chr1 184518529 184518624 -12676808 + MER20 DNA MER1_type 38 140 -79 2 1992 1107 296 69 12 chr1 184519494 184519826 -12675606 + MLT1A0 LTR MaLR 12 362 -3 2 1992 427 215 108 0 chr1 184520503 184520596 -12674836 - PB1 SINE Alu -2 125 23 2 1992 287 349 28 28 chr1 184520631 184520811 -12674621 + L2 LINE L2 2010 2189 -1230 2 1992 307 281 33 11 chr1 184520942 184521032 -12674400 - MIRc SINE MIR -130 138 47 2 1992 875 227 52 0 chr1 184521292 184521486 -12673946 - B3 SINE B2 -10 206 3 3 1992 248 318 35 0 chr1 184521692 184521777 -12673655 - MTD LTR MaLR -314 105 18 3 1992 259 320 117 104 chr1 184522159 184522389 -12673043 - MLT1J LTR MaLR -56 456 224 3 1992 339 44 0 0 chr1 184523762 184523807 -12671625 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 3 1992 654 82 0 0 chr1 184524273 184524371 -12671061 + (GA)n Simple_repeat Simple_repeat 1 98 0 3 1992 229 185 56 0 chr1 184524701 184524755 -12670677 - Lx8 LINE L1 -2 7471 7415 3 1992 996 229 10 10 chr1 184524871 184524931 -12670501 - B3 SINE B2 -6 210 151 3 1992 345 24 0 0 chr1 184524931 184524973 -12670459 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1992 996 229 10 10 chr1 184524973 184525119 -12670313 - B3 SINE B2 -66 150 4 3 1992 256 113 37 19 chr1 184525121 184525156 -12670276 + polypyrimidine Low_complexity Low_complexity 21 57 0 3 1992 1164 89 0 16 chr1 184525156 184525339 -12670093 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1992 256 113 37 19 chr1 184525339 184525357 -12670075 + polypyrimidine Low_complexity Low_complexity 3 20 0 4 1992 841 234 148 11 chr1 184525408 184525685 -12669747 - Lx8 LINE L1 -331 7142 6828 3 1992 663 78 0 0 chr1 184526345 184526435 -12668997 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 4 1992 276 197 91 0 chr1 184526916 184526982 -12668450 + MLT1A1 LTR MaLR 317 388 -20 4 1992 394 301 19 0 chr1 184527247 184527350 -12668082 + MER5A DNA MER1_type 84 188 -1 4 1992 458 179 12 25 chr1 184528011 184528091 -12667341 + ID4_ SINE ID 1 79 -4 4 1992 22 56 0 0 chr1 184528092 184528128 -12667304 + AT_rich Low_complexity Low_complexity 1 36 0 4 1992 270 0 0 0 chr1 184529406 184529436 -12665996 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 4 1992 390 229 0 71 chr1 184530636 184530749 -12664683 - MLT1A1 LTR MaLR 0 408 304 4 1992 348 298 125 50 chr1 184531056 184531432 -12664000 - RMER15 LTR ERVL -15 560 39 4 1992 203 243 54 54 chr1 184531506 184531580 -12663852 + MIRb SINE MIR 180 253 -15 4 1992 970 159 0 20 chr1 184531590 184531738 -12663694 + B1_Mur4 SINE Alu 3 147 -3 5 1992 273 218 0 11 chr1 184531745 184531833 -12663599 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 5 1992 327 308 68 31 chr1 184535718 184535909 -12659523 + MIRc SINE MIR 70 267 -1 5 1992 567 233 133 93 chr1 184536668 184536947 -12658485 - B4A SINE B4 -1 291 2 5 1992 1284 34 0 0 chr1 184537231 184537378 -12658054 - B1_Mus1 SINE Alu 0 148 2 5 1992 324 0 0 0 chr1 184538592 184538628 -12656804 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1992 522 0 0 0 chr1 184538852 184538910 -12656522 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1992 401 315 27 0 chr1 184539113 184539259 -12656173 - L2b LINE L2 -14 3361 3212 5 1992 225 0 0 0 chr1 184540361 184540386 -12655046 + (CAG)n Simple_repeat Simple_repeat 2 26 0 5 1992 575 27 0 14 chr1 184540388 184540462 -12654970 + (GGA)n Simple_repeat Simple_repeat 3 75 0 5 1992 221 0 35 0 chr1 184541173 184541202 -12654230 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1992 181 306 97 0 chr1 184543201 184543263 -12652169 - MIR SINE MIR -62 146 79 6 1992 325 231 27 70 chr1 184544129 184544315 -12651117 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 6 1992 357 43 0 0 chr1 184545122 184545169 -12650263 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1992 311 82 82 0 chr1 184545331 184545380 -12650052 - HAL1-3A_ME LINE L1 -831 2027 1975 6 1992 968 104 26 11 chr1 184545386 184545666 -12649766 + (TG)n Simple_repeat Simple_repeat 1 284 0 6 1992 330 26 0 0 chr1 184546629 184546668 -12648764 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1992 297 289 59 59 chr1 184547118 184547254 -12648178 - MamGypLTR1a LTR Gypsy -588 196 61 6 1992 346 235 17 11 chr1 184547675 184547775 -12647657 - PB1D10 SINE Alu -3 114 14 6 1992 216 0 0 0 chr1 184547920 184547944 -12647488 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 1992 261 254 16 0 chr1 184548217 184548280 -12647152 + MIRb SINE MIR 48 111 -157 7 1992 252 0 0 0 chr1 184548283 184548311 -12647121 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1992 1059 276 34 25 chr1 184548369 184548726 -12646706 - Lx8 LINE L1 -98 7375 7016 7 1992 297 0 0 0 chr1 184548726 184548759 -12646673 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 1992 205 235 138 121 chr1 184548777 184548893 -12646539 + MIRb SINE MIR 106 223 -45 7 1993 637 295 19 68 chr1 184549504 184549711 -12645721 + B3A SINE B2 1 197 -1 7 1993 1736 196 46 17 chr1 184549817 184550164 -12645268 - ORR1D2 LTR MaLR 0 370 14 7 1993 252 0 0 0 chr1 184551026 184551054 -12644378 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1993 303 252 55 64 chr1 184551138 184551248 -12644184 + B1F SINE Alu 1 109 -40 7 1993 468 123 0 0 chr1 184552105 184552178 -12643254 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1993 276 326 28 10 chr1 184553486 184553611 -12641821 + MIR SINE MIR 29 164 -104 7 1993 228 333 0 0 chr1 184554563 184554623 -12640809 - MER117 DNA MER1_type -137 60 1 8 1993 713 303 153 22 chr1 184554667 184554981 -12640451 - MLT1A0 LTR MaLR -6 359 5 8 1993 406 305 63 74 chr1 184555830 184556099 -12639333 - L1MB8 LINE L1 -14 6164 5899 8 1993 319 380 44 0 chr1 184556211 184556369 -12639063 + MIRb SINE MIR 34 198 -70 8 1993 444 126 0 0 chr1 184556746 184556833 -12638599 + (GA)n Simple_repeat Simple_repeat 1 87 0 8 1993 182 37 0 36 chr1 184557263 184557291 -12638141 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 8 1993 870 201 0 0 chr1 184559479 184559839 -12635593 + (TTAGGG)n Simple_repeat Simple_repeat 1 360 0 8 1993 1146 100 0 0 chr1 184559856 184560036 -12635396 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 8 1993 21 36 0 0 chr1 184560467 184560495 -12634937 + AT_rich Low_complexity Low_complexity 1 28 0 8 1993 1059 94 0 7 chr1 184560525 184560665 -12634767 - B1_Mus1 SINE Alu -5 143 5 8 1993 207 240 19 9 chr1 184561515 184561620 -12633812 + (TA)n Simple_repeat Simple_repeat 1 106 0 8 1993 228 67 0 0 chr1 184561691 184561721 -12633711 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 1993 666 285 151 79 chr1 184561741 184562046 -12633386 - MER2 DNA MER2_type -1 344 18 9 1993 495 252 193 9 chr1 184562827 184563095 -12632337 - ORR1D2 LTR MaLR -16 354 1 9 1993 417 331 94 73 chr1 184563309 184563651 -12631781 - ORR1E LTR MaLR -1 358 10 9 1993 3323 298 90 116 chr1 184563636 184565206 -12630226 - ORR1E-int LTR MaLR -29 1551 23 9 1993 486 291 70 85 chr1 184565217 184565476 -12629956 - ORR1E LTR MaLR -39 320 66 9 1993 453 261 44 7 chr1 184565481 184565616 -12629816 + B1F SINE Alu 10 149 0 9 1993 235 226 19 19 chr1 184565636 184565690 -12629742 + ID4_ SINE ID 29 82 -1 9 1993 413 182 37 22 chr1 184565758 184565867 -12629565 - MTD LTR MaLR -16 403 257 9 1993 657 245 222 0 chr1 184565863 184566075 -12629357 + MTD LTR MaLR 161 419 0 9 1993 1347 239 54 31 chr1 184566076 184566468 -12628964 + MTD-int LTR MaLR 2 402 -856 9 1993 838 224 180 14 chr1 184566450 184566744 -12628688 + MTD-int LTR MaLR 916 1258 0 9 1993 1734 220 89 0 chr1 184566744 184567116 -12628316 + MTD LTR MaLR 1 405 -14 9 1993 382 371 0 15 chr1 184567223 184567357 -12628075 - Tigger5 DNA MER2_type -2217 189 58 9 1993 2475 93 190 0 chr1 184567935 184568299 -12627133 + RLTR10C LTR ERVK 1 433 -3 1 1993 259 267 206 10 chr1 184568464 184568566 -12626866 + L2b LINE L2 3233 3354 -21 1 1993 553 306 75 33 chr1 184569994 184570234 -12625198 + MLT1A0 LTR MaLR 69 318 -47 1 1993 351 185 24 36 chr1 184570669 184570753 -12624679 + PB1D10 SINE Alu 2 84 -33 1 1993 261 57 0 0 chr1 184570839 184570874 -12624558 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1993 1213 62 0 0 chr1 184570965 184571109 -12624323 - B1_Mus1 SINE Alu -2 146 3 1 1993 275 261 22 11 chr1 184571166 184571255 -12624177 + CT-rich Low_complexity Low_complexity 3 92 0 1 1993 23 54 0 0 chr1 184571734 184571771 -12623661 + AT_rich Low_complexity Low_complexity 1 37 0 1 1993 453 36 0 0 chr1 184572796 184572851 -12622581 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1993 396 0 0 0 chr1 184573276 184573320 -12622112 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1993 202 312 59 59 chr1 184573732 184573834 -12621598 - MIRm SINE MIR 0 276 175 1 1993 243 256 82 72 chr1 184573931 184574028 -12621404 - RMER20A LTR ERVK -285 231 134 1 1993 2842 125 38 25 chr1 184574348 184574824 -12620608 - RLTR45 LTR ERVK 0 482 1 1 1993 657 119 0 0 chr1 184575804 184575905 -12619527 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1993 576 146 154 1 chr1 184575907 184576027 -12619405 + RMER20A LTR ERVK 130 261 -366 1 1993 211 246 57 14 chr1 184576221 184576291 -12619141 + L2 LINE L2 2509 2581 -838 1 1993 335 230 86 47 chr1 184576791 184576919 -12618513 + MTEb LTR MaLR 245 377 -2 1 1993 292 153 25 9 chr1 184577111 184577172 -12618260 + RLTR9A LTR ERVK 1 61 -348 1 1993 445 160 31 66 chr1 184577172 184577284 -12618148 - RLTR45-int LTR ERVK -4804 2440 2348 1 1993 1262 75 137 25 chr1 184577421 184577625 -12617807 + RLTR9A LTR ERVK 142 368 0 1 1993 224 259 103 0 chr1 184578671 184578729 -12616703 + MIR3 SINE MIR 108 175 -101 1 1993 259 167 111 0 chr1 184579194 184579248 -12616184 - ORR1B2 LTR MaLR -307 60 1 1 1993 7297 168 58 44 chr1 184579248 184579981 -12615451 - ORR1B2-int LTR MaLR 0 1509 797 1 1993 869 118 79 0 chr1 184579981 184580108 -12615324 - B1_Mus1 SINE Alu -10 138 2 1 1993 7297 168 58 44 chr1 184580108 184580862 -12614570 - ORR1B2-int LTR MaLR -713 796 1 1 1993 1651 161 114 12 chr1 184580862 184580918 -12614514 - ORR1B2 LTR MaLR 0 367 303 1 1993 239 0 32 0 chr1 184580918 184580949 -12614483 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1993 1651 161 114 12 chr1 184580949 184581225 -12614207 - ORR1B2 LTR MaLR -65 302 2 1 1993 198 312 60 48 chr1 184582100 184582184 -12613248 - L3b LINE CR1 -13 469 385 1 1993 2167 109 14 64 chr1 184583298 184583642 -12611790 - ORR1A2 LTR MaLR 0 327 1 1 1993 243 0 0 0 chr1 184584532 184584559 -12610873 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1993 333 0 0 0 chr1 184584646 184584683 -12610749 - HAL1-3A_ME LINE L1 -847 2011 1975 1 1993 468 140 0 0 chr1 184584705 184584798 -12610634 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1993 25 0 0 0 chr1 184585302 184585327 -12610105 + AT_rich Low_complexity Low_complexity 1 25 0 1 1993 349 262 156 16 chr1 184585442 184585570 -12609862 - L1M5 LINE L1 -2739 3407 3262 1 1993 195 42 0 0 chr1 184585825 184585849 -12609583 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1993 493 249 23 58 chr1 184585884 184586032 -12609400 - PB1D10 SINE Alu 0 149 3 1 1993 2016 112 38 86 chr1 184586108 184586480 -12608952 + ORR1B1 LTR MaLR 41 394 0 1 1993 321 286 0 0 chr1 184587236 184587306 -12608126 - tRNA-Ala-GCA tRNA tRNA -3 72 3 1 1993 406 336 42 44 chr1 184587827 184588030 -12607402 - MIRc SINE MIR -43 219 17 1 1993 459 0 0 0 chr1 184588946 184588997 -12606435 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1993 244 285 145 55 chr1 184589194 184589339 -12606093 + MLT1L LTR MaLR 413 570 -40 1 1993 1610 43 0 0 chr1 184589768 184589955 -12605477 - B2_Mm1a SINE B2 -5 188 2 1 1993 733 248 271 7 chr1 184590148 184590428 -12605004 - ORR1E LTR MaLR -1 358 5 1 1993 259 284 137 0 chr1 184591125 184591220 -12604212 - MER77 LTR ERVL -26 581 474 1 1993 253 118 31 130 chr1 184591527 184591612 -12603820 - MT2B2 LTR ERVL -3 598 504 1 1993 341 154 11 32 chr1 184591643 184591737 -12603695 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1993 887 206 39 103 chr1 184591737 184592133 -12603299 - MT2B2 LTR ERVL -40 561 1 1 1993 249 333 85 45 chr1 184592509 184592685 -12602747 + LTR78 LTR ERV1 988 1170 -134 1 1993 228 286 16 0 chr1 184593752 184593815 -12601617 - RLTR19C LTR ERVK -409 97 34 1 1993 279 0 0 0 chr1 184594704 184594735 -12600697 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1993 350 304 121 14 chr1 184594767 184594907 -12600525 - MIR SINE MIR -100 162 8 1 1993 998 213 5 11 chr1 184595993 184596183 -12599249 - B3 SINE B2 -1 215 27 1 1993 180 286 103 80 chr1 184597366 184597541 -12597891 - MIR SINE MIR 0 262 84 1 1993 289 282 110 55 chr1 184597714 184597823 -12597609 + RSINE1 SINE B4 37 151 -14 1 1993 378 0 0 0 chr1 184597862 184597904 -12597528 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1993 183 211 33 50 chr1 184597904 184597964 -12597468 - MIRb SINE MIR -121 147 89 1 1993 445 275 55 18 chr1 184598586 184598749 -12596683 + MIRb SINE MIR 78 246 -22 1 1993 972 119 0 0 chr1 184599460 184599637 -12595795 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1993 246 143 0 0 chr1 184599648 184599697 -12595735 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1993 180 293 0 0 chr1 184599721 184599762 -12595670 - L2 LINE L2 -3371 48 8 1 1993 1366 258 60 8 chr1 184601229 184601276 -12594156 + MTD LTR MaLR 3 49 -370 1 1993 216 0 0 0 chr1 184601276 184601300 -12594132 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1993 1366 258 60 8 chr1 184601300 184601604 -12593828 + MTD LTR MaLR 50 371 -48 1 1993 185 303 153 36 chr1 184602763 184602900 -12592532 + MIRc SINE MIR 82 234 -34 1 1993 414 311 139 9 chr1 184604330 184604560 -12590872 - L1MA10 LINE L1 -20 6314 6055 1 1993 1918 133 64 40 chr1 184604560 184604906 -12590526 - ORR1B1 LTR MaLR 0 394 41 1 1993 232 294 138 0 chr1 184605045 184605154 -12590278 + MIRb SINE MIR 71 194 -74 1 1993 1339 254 76 6 chr1 184605237 184605581 -12589851 + MTE2b LTR MaLR 1 368 -11 1 1993 2608 154 9 20 chr1 184606485 184606651 -12588781 + Lx LINE L1 6208 6372 -282 1 1993 3217 56 2 5 chr1 184606651 184607048 -12588384 - MTA_Mm LTR MaLR 0 396 1 1 1993 2608 154 9 20 chr1 184607048 184607332 -12588100 + Lx LINE L1 6373 6653 -1 1 1993 375 60 0 20 chr1 184608251 184608302 -12587130 + PB1D9 SINE Alu 10 59 -61 1 1993 488 202 29 9 chr1 184608377 184608482 -12586950 + B1_Mus2 SINE Alu 41 147 0 1 1993 267 311 0 13 chr1 184608531 184608606 -12586826 - MLT2D LTR ERVL -183 231 158 1 1993 257 258 55 22 chr1 184608624 184608715 -12586717 - MLT1A1 LTR MaLR -4 404 311 1 1993 235 227 0 0 chr1 184608809 184608853 -12586579 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1993 1912 114 138 8 chr1 184609226 184609589 -12585843 + RMER17C LTR ERVK 1 410 0 1 1993 239 352 22 0 chr1 184609688 184609779 -12585653 - MER58C DNA MER1_type 0 215 123 1 1993 318 355 9 0 chr1 184609772 184609879 -12585553 - Cheshire DNA MER1_type -2311 109 2 1 1993 317 299 82 10 chr1 184610586 184610684 -12584748 + RSINE1 SINE B4 45 149 -16 1 1993 180 0 0 0 chr1 184610695 184610715 -12584717 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 1993 750 231 70 28 chr1 184611512 184611726 -12583706 + RMER15 LTR ERVL 352 574 -1 1 1993 483 290 90 0 chr1 184613401 184613546 -12581886 - B4A SINE B4 -2 290 133 1 1993 513 254 133 7 chr1 184613550 184613685 -12581747 - MTE2a LTR MaLR -199 180 29 1 1993 1789 157 11 117 chr1 184613687 184614086 -12581346 - ORR1B1 LTR MaLR -10 384 1 1 1993 236 255 20 0 chr1 184614100 184614151 -12581281 - Charlie12 DNA MER1_type -2820 53 2 1 1993 214 326 58 0 chr1 184614732 184614818 -12580614 + MIRb SINE MIR 118 208 -60 1 1993 411 230 170 0 chr1 184615143 184615274 -12580158 + MLT1B LTR MaLR 1 154 -236 1 1993 244 246 35 0 chr1 184615274 184615331 -12580101 + ORR1E LTR MaLR 1 59 -300 1 1993 378 0 0 0 chr1 184615535 184615577 -12579855 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1 1993 719 203 92 11 chr1 184615880 184616054 -12579378 + MTEa LTR MaLR 3 190 -189 1 1993 396 0 0 0 chr1 184616055 184616099 -12579333 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1993 401 135 53 13 chr1 184616124 184616199 -12579233 + MTEa LTR MaLR 302 379 0 1 1993 472 273 55 41 chr1 184617307 184617452 -12577980 - B1F SINE Alu -1 148 2 1 1993 667 303 66 42 chr1 184617620 184618053 -12577379 + RLTR15 LTR ERVK 20 487 -41 1 1993 2454 159 16 11 chr1 184618360 184618804 -12576628 + RLTR11A2 LTR ERVK 82 527 0 1 1993 673 189 320 0 chr1 184618805 184619067 -12576365 + MTD LTR MaLR 71 416 -3 1 1993 314 304 31 6 chr1 184619229 184619391 -12576041 - MLT1H LTR MaLR -328 161 33 1 1993 2440 187 36 97 chr1 184619548 184620157 -12575275 - RMER15 LTR ERVL -2 573 2 1 1993 297 314 161 0 chr1 184620397 184620534 -12574898 + Tigger16a DNA Tigger 760 918 -15 1 1993 338 339 8 0 chr1 184620825 184620943 -12574489 + (TG)n Simple_repeat Simple_repeat 2 120 0 1 1993 2406 117 202 0 chr1 184621420 184621856 -12573576 - RLTR28 LTR ERVL 0 524 1 1 1993 207 245 20 0 chr1 184623065 184623114 -12572318 + MIR SINE MIR 91 140 -122 1 1993 282 29 0 0 chr1 184623300 184623335 -12572097 + (TATG)n Simple_repeat Simple_repeat 1 35 0 1 1993 480 277 72 144 chr1 184624082 184624276 -12571156 - B3A SINE B2 -17 181 2 1 1993 443 294 59 28 chr1 184624393 184624648 -12570784 + L1MB3 LINE L1 5853 6115 -68 1 1993 192 97 0 0 chr1 184624671 184624702 -12570730 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 1993 268 300 60 35 chr1 184627562 184627764 -12567668 + B3A SINE B2 4 212 -4 1 1993 1274 73 0 11 chr1 184629259 184629439 -12565993 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 1993 444 19 0 0 chr1 184629442 184629495 -12565937 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1993 751 123 0 0 chr1 184630869 184630975 -12564457 - B2_Mm2 SINE B2 -88 107 2 2 1993 425 381 12 0 chr1 184631011 184631171 -12564261 - RSINE1 SINE B4 0 165 4 2 1993 314 286 83 28 chr1 184632486 184632630 -12562802 + L1MEg LINE L1 392 543 -5699 2 1993 360 315 130 39 chr1 184632670 184632878 -12562554 + L1MEg LINE L1 4619 4845 -1301 2 1993 450 275 73 37 chr1 184633008 184633280 -12562152 + L1MEg LINE L1 4879 5160 -986 2 1993 375 255 140 14 chr1 184633343 184633486 -12561946 - RSINE1 SINE B4 0 165 5 2 1993 23 97 0 0 chr1 184633533 184633605 -12561827 + AT_rich Low_complexity Low_complexity 1 72 0 2 1993 710 268 182 4 chr1 184633608 184633790 -12561642 + B4A SINE B4 1 216 -76 2 1993 341 0 45 0 chr1 184633790 184633834 -12561598 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1993 710 268 182 4 chr1 184633834 184633887 -12561545 + B4A SINE B4 217 276 -16 2 1993 225 278 0 0 chr1 184633905 184633959 -12561473 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2 1993 6090 54 0 22 chr1 184634072 184634849 -12560583 + L1Md_F2 LINE L1 5823 6582 0 2 1993 207 0 0 0 chr1 184634862 184634885 -12560547 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1993 958 210 38 128 chr1 184635035 184635324 -12560108 + MTD LTR MaLR 14 276 -143 2 1993 1906 158 88 0 chr1 184635328 184635656 -12559776 + ORR1C2 LTR MaLR 28 384 0 2 1993 5542 224 38 30 chr1 184635656 184637015 -12558417 + ORR1C2-int LTR MaLR 1 1370 0 2 1993 893 167 62 0 chr1 184637017 184637179 -12558253 + ORR1C2 LTR MaLR 3 174 -204 2 1993 1926 173 13 0 chr1 184637174 184637492 -12557940 + RMER15 LTR ERVL 254 575 0 2 1993 555 216 36 0 chr1 184637669 184637780 -12557652 - MTEa LTR MaLR 0 379 265 2 1993 410 257 119 0 chr1 184637772 184637881 -12557551 - RMER15 LTR ERVL -22 553 432 2 1993 366 80 0 0 chr1 184637881 184637931 -12557501 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1993 256 242 45 0 chr1 184637931 184637997 -12557435 - RMER19A LTR ERVK -3 734 666 2 1993 2983 129 17 11 chr1 184637981 184638451 -12556981 - RMER19A LTR ERVK -262 475 3 2 1993 297 0 0 0 chr1 184638451 184638484 -12556948 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1993 561 303 57 69 chr1 184638484 184638764 -12556668 - RMER15 LTR ERVL -158 417 17 2 1993 531 273 111 118 chr1 184638809 184639071 -12556361 - MTEa LTR MaLR -118 261 2 2 1993 1204 68 0 0 chr1 184639213 184639361 -12556071 + B1_Mus1 SINE Alu 1 148 0 2 1993 369 0 0 0 chr1 184641115 184641156 -12554276 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2 1993 953 299 61 0 chr1 184641233 184641544 -12553888 - L1MB2 LINE L1 -15 6156 5827 2 1993 508 339 129 45 chr1 184641644 184641931 -12553501 - MLT1H LTR MaLR -228 321 11 2 1993 259 336 146 0 chr1 184642268 184642405 -12553027 - Zaphod DNA Tip100 -2 4029 3873 2 1993 432 0 0 0 chr1 184642686 184642734 -12552698 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1993 227 293 58 48 chr1 184643101 184643205 -12552227 - MTEb LTR MaLR -6 373 269 2 1993 333 0 0 0 chr1 184643327 184643364 -12552068 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1993 687 295 87 76 chr1 184643518 184643634 -12551798 + L1ME1 LINE L1 5672 5786 -393 2 1993 1096 222 100 33 chr1 184643634 184643965 -12551467 + ORR1E LTR MaLR 5 357 -2 2 1993 687 295 87 76 chr1 184643965 184644322 -12551110 + L1ME1 LINE L1 5787 6150 -29 2 1993 1000 264 54 94 chr1 184645100 184645506 -12549926 + MLT1B LTR MaLR 1 390 0 2 1993 710 261 13 0 chr1 184645775 184645928 -12549504 + RSINE1 SINE B4 11 165 0 2 1993 393 110 0 0 chr1 184646324 184646397 -12549035 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2 1993 810 251 28 6 chr1 184646416 184646596 -12548836 - B4A SINE B4 -107 185 2 2 1993 797 108 503 3 chr1 184646725 184646950 -12548482 - ORR1A2 LTR MaLR 0 327 1 2 1993 358 311 79 49 chr1 184647364 184647567 -12547865 + MLT1B LTR MaLR 387 595 0 2 1993 781 284 14 19 chr1 184647576 184647788 -12547644 - MER46C DNA MER2_type -7 331 121 2 1993 267 314 19 28 chr1 184648122 184648230 -12547202 + ID_B1 SINE B4 118 224 0 2 1993 695 252 47 24 chr1 184648893 184649117 -12546315 - ORR1E LTR MaLR -152 222 3 2 1993 679 276 57 49 chr1 184649120 184649383 -12546049 + MER21B LTR ERV1 475 739 -124 2 1993 387 0 0 0 chr1 184649428 184649471 -12545961 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1993 403 331 133 28 chr1 184649737 184649992 -12545440 + LTR16B2 LTR ERVL 99 380 -82 2 1993 264 277 81 32 chr1 184650597 184650720 -12544712 - B1_Mur4 SINE Alu -11 139 11 2 1993 707 249 56 34 chr1 184650639 184650734 -12544698 - B4 SINE B4 -108 184 83 2 1993 1239 126 0 0 chr1 184650734 184651093 -12544339 + (CA)n Simple_repeat Simple_repeat 1 359 0 2 1993 707 249 56 34 chr1 184651093 184651173 -12544259 - B4 SINE B4 -210 82 3 2 1993 520 305 0 44 chr1 184651642 184651779 -12543653 + MTD LTR MaLR 46 176 -243 2 1993 465 19 0 0 chr1 184652213 184652267 -12543165 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 2 1993 321 277 108 101 chr1 184652693 184653021 -12542411 + ORR1E LTR MaLR 7 355 -4 2 1993 2703 148 12 2 chr1 184653155 184653562 -12541870 + MTC LTR MaLR 3 413 -8 2 1993 391 293 79 0 chr1 184655241 184655381 -12540051 - ORR1E LTR MaLR 0 379 229 2 1993 422 308 20 0 chr1 184655404 184655550 -12539882 - ORR1E LTR MaLR -207 152 4 2 1993 396 0 0 0 chr1 184655666 184655710 -12539722 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1993 397 283 105 69 chr1 184655724 184656142 -12539290 - L1MC4 LINE L1 -541 7501 7069 2 1993 1251 28 0 0 chr1 184656151 184656294 -12539138 - B1_Mm SINE Alu 0 147 5 2 1993 677 242 176 24 chr1 184656373 184656623 -12538809 - B4A SINE B4 0 292 5 2 1993 626 263 131 5 chr1 184657127 184657318 -12538114 + B3 SINE B2 2 216 0 2 1993 264 91 0 0 chr1 184657321 184657365 -12538067 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1993 758 274 0 6 chr1 184659556 184659721 -12535711 - B3A SINE B2 -34 164 1 2 1993 291 342 49 43 chr1 184660050 184660221 -12535211 - MIRb SINE MIR -29 233 63 2 1993 1081 300 42 33 chr1 184661005 184661546 -12533886 - L1MEe LINE L1 -2098 4048 3503 2 1993 556 286 8 0 chr1 184661641 184661774 -12533658 + RSINE1 SINE B4 2 135 -30 2 1993 1675 36 0 0 chr1 184662097 184662290 -12533142 - B2_Mm1a SINE B2 0 193 1 2 1993 250 314 99 29 chr1 184662292 184662535 -12532897 - L1MEe LINE L1 -3053 3093 2834 2 1993 180 0 0 0 chr1 184662691 184662711 -12532721 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1993 383 310 108 32 chr1 184662833 184663297 -12532135 - L1MEe LINE L1 -3705 2461 1963 2 1993 249 323 65 50 chr1 184663559 184663758 -12531674 - L1MEe LINE L1 -4559 1607 1406 2 1993 217 120 60 0 chr1 184663806 184663856 -12531576 + CT-rich Low_complexity Low_complexity 4 56 0 2 1993 203 88 29 0 chr1 184663863 184663897 -12531535 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1993 697 295 42 10 chr1 184663907 184664099 -12531333 - ID_B1 SINE B4 -25 199 2 2 1993 302 291 50 55 chr1 184664191 184664409 -12531023 - L1MEe LINE L1 -4943 1193 977 2 1993 23 33 0 0 chr1 184664441 184664471 -12530961 + AT_rich Low_complexity Low_complexity 1 30 0 2 1993 246 345 70 65 chr1 184666259 184666445 -12528987 + RMER15 LTR ERVL 332 518 -57 2 1993 414 0 0 0 chr1 184666802 184666848 -12528584 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1993 261 224 0 0 chr1 184666888 184666937 -12528495 - ID4 SINE ID -33 50 2 2 1993 620 271 105 59 chr1 184667126 184667365 -12528067 - MTEb LTR MaLR -5 374 125 2 1993 277 267 94 47 chr1 184667579 184667685 -12527747 - MIR SINE MIR -145 117 7 2 1993 199 333 75 70 chr1 184667738 184667951 -12527481 + MIR SINE MIR 47 260 -2 2 1993 443 275 104 16 chr1 184668547 184668739 -12526693 - B3 SINE B2 -3 213 5 2 1993 1183 319 51 39 chr1 184668782 184669530 -12525902 - L1MD1 LINE L1 -75 6558 5802 2 1993 2769 246 105 60 chr1 184669530 184670519 -12524913 - Lx8 LINE L1 -5 7468 6435 2 1993 850 258 68 113 chr1 184670621 184670833 -12524599 + MTE2a LTR MaLR 2 194 -185 2 1993 384 59 0 0 chr1 184670833 184670884 -12524548 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1993 850 258 68 113 chr1 184670884 184670964 -12524468 + MTE2a LTR MaLR 195 281 -98 2 1993 3106 254 96 21 chr1 184670973 184672275 -12523157 - L1MD1 LINE L1 -2312 4225 2827 2 1993 284 258 106 0 chr1 184672505 184672571 -12522861 + Lx8 LINE L1 6229 6301 -1172 2 1993 731 292 92 27 chr1 184672676 184673045 -12522387 - L1M2 LINE L1 -1055 5088 4696 2 1993 1276 288 140 25 chr1 184673040 184674100 -12521332 - L1M2 LINE L1 -2753 3390 2209 2 1993 573 346 19 19 chr1 184674142 184674304 -12521128 - B4A SINE B4 -4 288 127 2 1993 23 0 0 0 chr1 184674356 184674379 -12521053 + AT_rich Low_complexity Low_complexity 1 23 0 2 1993 378 159 0 0 chr1 184674390 184674459 -12520973 + CT-rich Low_complexity Low_complexity 2 70 0 2 1993 370 268 23 11 chr1 184674557 184674644 -12520788 - RSINE1 SINE B4 -61 104 17 2 1993 738 299 145 46 chr1 184674662 184674934 -12520498 - L1MD1 LINE L1 -5294 1339 1034 2 1993 876 156 96 23 chr1 184674934 184675111 -12520321 + B2_Mm2 SINE B2 1 190 -5 2 1993 738 299 145 46 chr1 184675111 184675294 -12520138 - L1MD1 LINE L1 -5600 1033 839 2 1993 224 327 8 93 chr1 184675550 184675668 -12519764 - MIRb SINE MIR -44 224 117 2 1993 272 258 207 52 chr1 184676076 184676211 -12519221 + RSINE1 SINE B4 4 159 -6 2 1993 362 239 22 44 chr1 184676533 184676638 -12518794 - B1F SINE Alu -1 148 13 2 1993 180 122 23 68 chr1 184677682 184677726 -12517706 - MIR3 SINE MIR -166 42 1 2 1993 441 248 68 56 chr1 184679633 184679795 -12515637 - RSINE1 SINE B4 0 165 2 2 1994 353 309 205 6 chr1 184680898 184680984 -12514448 - RMER30 DNA MER1_type -2 200 82 2 1994 249 57 0 0 chr1 184680984 184681019 -12514413 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1994 353 309 205 6 chr1 184681019 184681098 -12514334 - RMER30 DNA MER1_type -121 81 3 2 1994 572 312 0 61 chr1 184681207 184681371 -12514061 + RSINE1 SINE B4 12 165 0 2 1994 234 241 0 69 chr1 184681425 184681483 -12513949 - RSINE1 SINE B4 0 165 112 2 1994 504 178 0 0 chr1 184682085 184682192 -12513240 + CT-rich Low_complexity Low_complexity 2 108 0 2 1994 332 203 54 0 chr1 184682237 184682311 -12513121 + MER33 DNA MER1_type 27 104 -220 2 1994 594 179 201 8 chr1 184682324 184682481 -12512951 + B3A SINE B2 2 188 -28 2 1994 359 282 27 0 chr1 184682601 184682711 -12512721 + MER33 DNA MER1_type 182 294 -30 2 1994 764 266 58 11 chr1 184682764 184683042 -12512390 - L1MA6 LINE L1 -1 6299 6009 2 1994 543 284 195 9 chr1 184683175 184683406 -12512026 - B4 SINE B4 -18 274 1 2 1994 188 34 0 33 chr1 184683703 184683733 -12511699 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1994 189 94 0 0 chr1 184684402 184684434 -12510998 + (G)n Simple_repeat Simple_repeat 1 32 0 2 1994 231 279 106 48 chr1 184685655 184685843 -12509589 - ORR1E LTR MaLR -84 275 77 2 1994 563 301 70 5 chr1 184686107 184686294 -12509138 + MER3 DNA MER1_type 6 204 -5 3 1994 307 339 101 30 chr1 184686616 184686814 -12508618 + MER112 DNA MER1_type 34 245 -16 3 1994 3067 65 36 0 chr1 184686971 184687357 -12508075 + MTB LTR MaLR 1 400 0 3 1994 334 360 24 0 chr1 184687963 184688088 -12507344 + L2a LINE L2 3285 3412 -14 3 1994 180 97 0 0 chr1 184688430 184688461 -12506971 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1994 464 195 58 144 chr1 184689036 184689210 -12506222 + MLT1J1 LTR MaLR 38 196 -248 3 1994 660 59 0 0 chr1 184689341 184689426 -12506006 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 3 1994 1098 110 0 0 chr1 184689446 184689610 -12505822 + (TTC)n Simple_repeat Simple_repeat 1 164 0 3 1994 301 323 185 0 chr1 184689642 184689772 -12505660 + MER74C LTR ERVL 305 458 -2 3 1994 313 273 142 26 chr1 184690731 184690844 -12504588 + MLT1J1 LTR MaLR 211 336 -29 3 1994 479 181 12 0 chr1 184691100 184691183 -12504249 + MLT1B LTR MaLR 54 137 -253 3 1994 989 203 5 34 chr1 184691665 184691874 -12503558 - B3 SINE B2 -11 205 3 3 1994 1076 250 146 29 chr1 184691988 184692123 -12503309 + MTD LTR MaLR 15 162 -257 3 1994 675 117 0 0 chr1 184692123 184692226 -12503206 + (CGTG)n Simple_repeat Simple_repeat 1 103 0 3 1994 1076 241 107 27 chr1 184692226 184692449 -12502983 + MTD LTR MaLR 163 405 -14 3 1994 300 282 0 25 chr1 184692565 184692645 -12502787 - ID4 SINE ID -2 81 4 3 1994 237 260 0 0 chr1 184693945 184694022 -12501410 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1994 22 94 0 0 chr1 184694284 184694348 -12501084 + GC_rich Low_complexity Low_complexity 1 64 0 3 1994 285 58 19 37 chr1 184694377 184694431 -12501001 + (CTCG)n Simple_repeat Simple_repeat 4 56 0 3 1994 348 233 0 0 chr1 184697421 184697494 -12497938 - MER5A1 DNA MER1_type -34 132 60 3 1994 520 301 39 34 chr1 184697508 184697687 -12497745 - B3A SINE B2 -10 188 9 3 1994 297 239 30 0 chr1 184697700 184697767 -12497665 - MER5A1 DNA MER1_type -95 71 3 3 1994 2961 48 16 3 chr1 184699856 184700232 -12495200 + MTA_Mm LTR MaLR 1 381 -15 3 1994 8288 64 19 3 chr1 184700234 184701315 -12494117 + MTA_Mm-int LTR MaLR 1 1098 0 3 1994 3330 31 10 2 chr1 184701315 184701708 -12493724 + MTA_Mm LTR MaLR 1 396 0 3 1994 253 365 0 65 chr1 184701920 184702043 -12493389 + MIR SINE MIR 19 133 -75 3 1994 363 320 76 30 chr1 184702103 184702235 -12493197 + MER44D DNA MER2_type 61 198 -507 3 1994 519 283 62 112 chr1 184702234 184702493 -12492939 + MER44D DNA MER2_type 456 701 -4 3 1994 248 366 9 18 chr1 184703123 184703237 -12492195 - MIR SINE MIR -32 230 118 3 1994 216 0 0 0 chr1 184705025 184705049 -12490383 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1994 476 223 21 0 chr1 184705128 184705222 -12490210 + B4A SINE B4 133 228 -64 3 1994 410 262 313 12 chr1 184705230 184705396 -12490036 + B3 SINE B2 1 216 0 3 1994 297 0 0 0 chr1 184705492 184705525 -12489907 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1994 363 60 0 0 chr1 184706029 184706079 -12489353 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1994 271 60 0 39 chr1 184706486 184706538 -12488894 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 3 1994 200 298 254 0 chr1 184706821 184706935 -12488497 - L2a LINE L2 -5 3421 3279 3 1994 187 333 0 0 chr1 184706915 184706978 -12488454 - L2a LINE L2 -674 2745 2683 3 1994 2174 154 56 15 chr1 184707735 184708130 -12487302 - MTC LTR MaLR -10 411 1 3 1994 658 285 50 106 chr1 184708130 184708452 -12486980 + ORR1E LTR MaLR 37 340 -19 3 1994 483 63 0 0 chr1 184709116 184709179 -12486253 + (CAT)n Simple_repeat Simple_repeat 1 63 0 3 1994 454 301 47 21 chr1 184709618 184709811 -12485621 + RMER30 DNA MER1_type 2 199 -3 3 1994 1622 146 50 11 chr1 184710795 184711073 -12484359 + ORR1D1 LTR MaLR 2 290 -84 3 1994 457 329 99 40 chr1 184711082 184711304 -12484128 + MIR SINE MIR 2 236 -26 3 1994 430 264 93 13 chr1 184711636 184711786 -12483646 - RSINE1 SINE B4 -3 162 1 3 1994 288 342 74 8 chr1 184712036 184712157 -12483275 - L2b LINE L2 -1 3374 3246 3 1994 438 304 132 103 chr1 184712178 184712526 -12482906 - MLT1B LTR MaLR -22 368 11 3 1994 554 140 0 10 chr1 184713189 184713290 -12482142 + (TCC)n Simple_repeat Simple_repeat 1 100 0 3 1994 584 164 152 19 chr1 184713371 184713499 -12481933 + ORR1D1 LTR MaLR 237 368 -6 3 1994 1257 275 27 37 chr1 184716062 184716390 -12479042 + MER2 DNA MER2_type 17 341 -4 3 1994 233 306 14 27 chr1 184717057 184717131 -12478301 + MTEb LTR MaLR 300 372 -7 3 1994 234 294 62 27 chr1 184717226 184717338 -12478094 - MIRb SINE MIR -47 221 106 3 1994 282 56 0 0 chr1 184717613 184717649 -12477783 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 1994 848 226 86 40 chr1 184717654 184717829 -12477603 - B3 SINE B2 -19 197 15 3 1994 1199 55 182 0 chr1 184718329 184718494 -12476938 + B2_Mm2 SINE B2 1 195 0 3 1994 207 216 99 33 chr1 184718678 184718769 -12476663 + MIRb SINE MIR 42 138 -130 3 1994 276 30 0 0 chr1 184719551 184719584 -12475848 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 1994 299 342 0 0 chr1 184720622 184720736 -12474696 - L2b LINE L2 -297 3078 2965 3 1994 393 216 12 18 chr1 184720793 184720958 -12474474 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 1994 443 248 3 0 chr1 184720971 184721328 -12474104 + (TG)n Simple_repeat Simple_repeat 1 358 0 3 1994 505 289 5 97 chr1 184721343 184721560 -12473872 - B3A SINE B2 -10 206 15 3 1994 316 327 176 42 chr1 184721787 184722250 -12473182 - L1M5 LINE L1 -1120 5026 4502 3 1994 220 341 66 18 chr1 184724853 184725020 -12470412 + L2 LINE L2 1834 2008 -1411 3 1994 1593 171 39 60 chr1 184725314 184725650 -12469782 + ORR1A4 LTR MaLR 1 329 0 3 1994 454 302 58 42 chr1 184726035 184726225 -12469207 + MLT1A1 LTR MaLR 1 193 -215 3 1994 216 200 0 0 chr1 184726228 184726273 -12469159 + CT-rich Low_complexity Low_complexity 1 45 0 3 1994 1184 82 0 0 chr1 184726273 184726419 -12469013 - B1_Mm SINE Alu 0 147 2 3 1994 320 94 19 0 chr1 184726524 184726577 -12468855 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1994 412 337 110 42 chr1 184728633 184728943 -12466489 - HAL1 LINE L1 -726 1781 1451 3 1994 276 312 110 14 chr1 184729053 184729271 -12466161 - HAL1 LINE L1 -1162 1345 1107 3 1994 1777 199 44 10 chr1 184729377 184729762 -12465670 - Lx6 LINE L1 0 7460 7063 3 1994 661 280 142 12 chr1 184729852 184730098 -12465334 - B4A SINE B4 -14 278 1 3 1994 1003 135 11 6 chr1 184730305 184730484 -12464948 + CT-rich Low_complexity Low_complexity 1 180 0 3 1994 234 300 74 16 chr1 184730890 184731012 -12464420 - MIRb SINE MIR -35 233 105 3 1994 180 0 0 0 chr1 184731815 184731835 -12463597 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 3 1994 5098 59 47 0 chr1 184733524 184734185 -12461247 - L1_Mus3 LINE L1 0 6638 5947 3 1994 222 37 0 0 chr1 184734458 184734485 -12460947 + (CAGC)n Simple_repeat Simple_repeat 4 30 0 3 1994 517 239 0 0 chr1 184734985 184735073 -12460359 + PB1D10 SINE Alu 1 88 -29 3 1994 290 329 0 0 chr1 184735077 184735159 -12460273 + ID4 SINE ID 2 83 0 3 1994 532 281 21 21 chr1 184735772 184735914 -12459518 + B1F1 SINE Alu 8 149 0 3 1994 316 277 2 32 chr1 184735917 184736019 -12459413 + ID4_ SINE ID 4 101 -51 3 1994 1310 91 16 0 chr1 184736120 184736306 -12459126 + B2_Mm2 SINE B2 1 189 -6 3 1994 365 166 22 54 chr1 184736837 184737022 -12458410 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1994 228 204 0 36 chr1 184737022 184737078 -12458354 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 3 1994 318 235 15 0 chr1 184737087 184737155 -12458277 - ID4_ SINE ID -13 70 2 3 1994 2154 216 57 8 chr1 184737995 184738489 -12456943 - RLTR11A2 LTR ERVK -9 518 1 3 1994 3482 209 70 56 chr1 184738490 184739621 -12455811 - MYSERV6-int LTR ERVK 0 8959 7813 3 1994 351 209 15 3 chr1 184739724 184739803 -12455629 - PB1D10 SINE Alu -54 94 10 3 1994 324 284 23 0 chr1 184739733 184739821 -12455611 - ID_B1 SINE B4 -63 161 72 3 1994 484 107 19 28 chr1 184739821 184739927 -12455505 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 1994 950 257 94 19 chr1 184739952 184740218 -12455214 - B4A SINE B4 -6 286 1 3 1994 241 299 58 87 chr1 184740674 184740846 -12454586 - B4 SINE B4 0 292 126 3 1994 268 260 9 55 chr1 184740961 184741071 -12454361 + CT-rich Low_complexity Low_complexity 5 109 0 3 1994 1300 117 27 0 chr1 184741678 184741866 -12453566 + B2_Mm2 SINE B2 1 193 -2 3 1994 812 94 16 0 chr1 184741945 184742072 -12453360 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 3 1994 972 281 160 7 chr1 184742157 184742569 -12452863 + Charlie4a DNA MER1_type 28 502 -6 3 1994 383 337 55 30 chr1 184742740 184742942 -12452490 - MIRc SINE MIR -1 267 61 3 1994 189 196 0 0 chr1 184743607 184743663 -12451769 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1994 1011 243 35 31 chr1 184743664 184743953 -12451479 - B4 SINE B4 -2 290 1 3 1994 195 254 14 56 chr1 184744462 184744533 -12450899 - MIRc SINE MIR -189 79 12 3 1994 892 269 100 19 chr1 184745586 184745897 -12449535 + MTE2b LTR MaLR 7 342 -37 3 1994 396 266 37 19 chr1 184746161 184746322 -12449110 + C-rich Low_complexity Low_complexity 3 166 0 3 1994 194 278 139 0 chr1 184746794 184746866 -12448566 - L3 LINE CR1 -2292 2197 2116 3 1994 200 279 16 139 chr1 184747078 184747207 -12448225 - MIRb SINE MIR -115 153 41 3 1994 769 219 15 0 chr1 184749716 184749853 -12445579 + RSINE1 SINE B4 4 142 -23 3 1994 405 86 0 0 chr1 184749856 184749914 -12445518 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1994 29 47 0 0 chr1 184749914 184749957 -12445475 + AT_rich Low_complexity Low_complexity 1 43 0 3 1994 198 0 0 0 chr1 184751354 184751376 -12444056 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1994 995 255 0 40 chr1 184752123 184752348 -12443084 + B3 SINE B2 1 216 0 3 1994 242 335 56 50 chr1 184752535 184752714 -12442718 + ORR1E LTR MaLR 1 180 -179 3 1994 229 278 0 0 chr1 184752759 184752813 -12442619 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1994 352 234 0 13 chr1 184752813 184752891 -12442541 + HAL1-3A_ME LINE L1 1976 2052 -806 3 1994 268 269 38 13 chr1 184753048 184753127 -12442305 + MIRc SINE MIR 171 251 -17 4 1994 579 286 116 30 chr1 184753404 184753602 -12441830 + ID_B1 SINE B4 1 215 -9 4 1994 189 0 0 0 chr1 184755071 184755092 -12440340 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1994 280 311 38 19 chr1 184755489 184755655 -12439777 - MIRc SINE MIR -14 194 23 4 1994 462 235 91 0 chr1 184755904 184756036 -12439396 + B1F SINE Alu 1 144 -5 4 1994 441 0 0 0 chr1 184756101 184756150 -12439282 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1994 208 147 0 0 chr1 184756167 184756201 -12439231 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1994 205 298 0 0 chr1 184758980 184759037 -12436395 + (CCCA)n Simple_repeat Simple_repeat 2 58 0 4 1994 355 346 111 17 chr1 184759095 184759330 -12436102 - MLT2B4 LTR ERVL -271 285 29 4 1994 261 0 0 0 chr1 184759372 184759401 -12436031 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1994 892 167 21 7 chr1 184760451 184760596 -12434836 + B1_Mur1 SINE Alu 1 147 -2 4 1994 214 196 22 0 chr1 184760597 184760643 -12434789 + A-rich Low_complexity Low_complexity 1 47 0 4 1994 409 232 14 0 chr1 184760797 184760939 -12434493 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 4 1994 439 275 4 12 chr1 184760961 184761202 -12434230 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 4 1994 459 333 0 109 chr1 184761710 184761875 -12433557 - B1F SINE Alu -2 147 1 4 1994 192 77 0 0 chr1 184763150 184763176 -12432256 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1994 854 195 59 0 chr1 184764159 184764328 -12431104 - B3A SINE B2 -18 180 2 4 1994 387 215 25 0 chr1 184765065 184765144 -12430288 - ID4_ SINE ID -1 82 2 4 1994 486 49 0 0 chr1 184765213 184765274 -12430158 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 4 1994 413 283 20 22 chr1 184765406 184765542 -12429890 - MIRb SINE MIR -73 195 61 4 1994 376 273 152 0 chr1 184765891 184765990 -12429442 + ID_B1 SINE B4 33 146 -78 4 1994 256 246 62 0 chr1 184766051 184766116 -12429316 + B1F SINE Alu 81 149 0 4 1994 609 225 15 8 chr1 184766595 184766725 -12428707 - ID_B1 SINE B4 0 224 94 4 1994 203 133 0 0 chr1 184766942 184766972 -12428460 + (CCA)n Simple_repeat Simple_repeat 2 31 0 4 1994 261 0 0 0 chr1 184767076 184767105 -12428327 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1994 745 261 29 24 chr1 184768589 184768797 -12426635 - B3 SINE B2 -7 209 1 4 1994 26 30 0 0 chr1 184770847 184770880 -12424552 + AT_rich Low_complexity Low_complexity 1 33 0 4 1994 197 260 40 40 chr1 184771664 184771740 -12423692 + L3b LINE CR1 110 185 -297 4 1994 224 230 73 98 chr1 184772447 184772529 -12422903 + ID4 SINE ID 3 82 -1 4 1994 1162 267 44 0 chr1 184772707 184772919 -12422513 + B4A SINE B4 2 218 -74 4 1994 234 128 0 0 chr1 184772919 184772958 -12422474 + (ATG)n Simple_repeat Simple_repeat 1 39 0 4 1994 1162 267 44 0 chr1 184772958 184773018 -12422414 + B4A SINE B4 219 285 -7 4 1994 288 137 0 0 chr1 184773043 184773094 -12422338 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1994 335 312 52 17 chr1 184773813 184773986 -12421446 - L1M5 LINE L1 -454 5719 5541 4 1994 843 242 69 3 chr1 184774164 184774457 -12420975 - L1M5 LINE L1 -743 5430 5120 4 1994 1051 46 0 0 chr1 184774501 184774631 -12420801 + B1_Mm SINE Alu 18 147 0 4 1994 243 0 0 0 chr1 184774631 184774658 -12420774 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1994 609 303 7 13 chr1 184774687 184774821 -12420611 + B3A SINE B2 40 172 -26 4 1994 231 36 0 0 chr1 184774821 184774849 -12420583 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1994 609 303 7 13 chr1 184774849 184774868 -12420564 + B3A SINE B2 173 191 -7 4 1994 360 311 64 68 chr1 184775055 184775290 -12420142 - L1M5 LINE L1 -1328 4818 4585 4 1994 1252 217 50 98 chr1 184775291 184775689 -12419743 + MTE2a LTR MaLR 1 379 0 4 1994 629 110 0 0 chr1 184775787 184775878 -12419554 + BC1_Mm scRNA scRNA 1 91 -61 4 1994 227 312 58 67 chr1 184775878 184775907 -12419525 + RSINE1 SINE B4 2 120 -45 4 1994 1098 228 5 14 chr1 184776054 184776272 -12419160 - B3 SINE B2 0 216 1 4 1994 356 295 53 11 chr1 184776510 184776707 -12418725 - L1M5 LINE L1 -2146 4000 3786 4 1994 229 299 20 10 chr1 184776866 184776964 -12418468 - L1M5 LINE L1 -2551 3595 3497 4 1994 891 112 0 0 chr1 184777643 184777777 -12417655 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 4 1994 381 250 1 46 chr1 184777777 184777895 -12417537 - PB1D9 SINE Alu -10 110 1 4 1994 233 310 8 101 chr1 184777789 184777918 -12417514 - ID_B1 SINE B4 -48 176 60 4 1994 399 307 72 22 chr1 184777932 184778208 -12417224 - L1M5 LINE L1 -3155 2991 2702 4 1994 220 244 0 0 chr1 184778332 184778373 -12417059 + PB1D10 SINE Alu 71 111 -6 4 1994 390 119 45 0 chr1 184778461 184778528 -12416904 - HAL1-3A_ME LINE L1 -813 2045 1976 4 1994 227 274 0 16 chr1 184778528 184778591 -12416841 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1994 1004 317 168 11 chr1 184779050 184779519 -12415913 - MER77 LTR ERVL -11 596 54 4 1994 260 296 158 60 chr1 184779629 184779863 -12415569 + L2a LINE L2 2950 3206 -220 4 1994 263 242 42 42 chr1 184780082 184780177 -12415255 + MER103 DNA DNA 13 107 -59 4 1994 733 333 12 36 chr1 184780677 184780929 -12414503 + MER47B DNA MER2_type 1 246 -172 4 1994 390 42 0 0 chr1 184780941 184780989 -12414443 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1994 1044 221 147 16 chr1 184781009 184781267 -12414165 - B4 SINE B4 0 292 1 4 1994 405 0 0 0 chr1 184781785 184781830 -12413602 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1994 218 378 0 0 chr1 184783203 184783293 -12412139 + BC1_Mm scRNA scRNA 3 92 -60 4 1994 315 0 0 0 chr1 184783336 184783371 -12412061 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1994 271 289 128 90 chr1 184784532 184784688 -12410744 + RSINE1 SINE B4 4 165 0 4 1994 180 122 39 39 chr1 184785707 184785758 -12409674 + T-rich Low_complexity Low_complexity 3 53 0 4 1994 216 277 149 30 chr1 184785758 184785825 -12409607 - ID4_ SINE ID 0 83 9 4 1994 348 351 22 22 chr1 184785849 184785986 -12409446 - B1F SINE Alu -9 140 4 4 1994 551 263 135 45 chr1 184786886 184787153 -12408279 + B4A SINE B4 2 292 0 4 1994 250 270 131 90 chr1 184787878 184788000 -12407432 + MER5A DNA MER1_type 60 186 -3 4 1994 239 284 196 45 chr1 184788162 184788295 -12407137 - MER5B DNA MER1_type 0 178 26 4 1994 378 0 0 0 chr1 184789842 184789884 -12405548 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1994 477 287 152 0 chr1 184791009 184791173 -12404259 + ID_B1 SINE B4 32 220 -4 4 1994 589 282 42 30 chr1 184791180 184791348 -12404084 + B3A SINE B2 2 171 -27 4 1994 576 29 0 0 chr1 184791351 184791421 -12404011 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1994 609 112 52 21 chr1 184791713 184791839 -12403593 + B1_Mus2 SINE Alu 6 149 0 4 1994 180 0 0 0 chr1 184792657 184792677 -12402755 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1994 456 234 82 68 chr1 184793698 184793788 -12401644 - RLTR20C LTR ERVK 0 534 445 4 1994 369 0 0 0 chr1 184793788 184793829 -12401603 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1994 456 234 82 68 chr1 184793829 184793885 -12401547 - RLTR20C LTR ERVK -90 444 386 4 1994 8266 37 2 1 chr1 184793889 184794915 -12400517 - L1Md_F2 LINE L1 0 6582 5586 4 1994 1741 192 56 63 chr1 184794915 184795360 -12400072 - RLTR20A LTR ERVK -99 442 1 4 1994 629 273 65 99 chr1 184795390 184795622 -12399810 - ORR1E LTR MaLR -130 229 6 4 1994 501 243 102 20 chr1 184795661 184795808 -12399624 - MTE-int LTR MaLR -41 1539 1381 4 1994 314 305 0 35 chr1 184795805 184795890 -12399542 - MTEb LTR MaLR -83 296 215 4 1994 944 158 25 6 chr1 184796378 184796537 -12398895 - URR1B DNA MER1_type 0 225 64 4 1994 212 196 0 38 chr1 184797205 184797258 -12398174 + G-rich Low_complexity Low_complexity 2 52 0 4 1994 333 301 0 0 chr1 184797579 184797662 -12397770 - ID4 SINE ID 0 83 1 4 1994 397 276 8 20 chr1 184797662 184797761 -12397671 - PB1D10 SINE Alu -54 95 2 4 1994 590 270 26 2 chr1 184799591 184799724 -12395708 - B1F1 SINE Alu -1 146 2 4 1994 281 209 0 23 chr1 184800443 184800531 -12394901 + CT-rich Low_complexity Low_complexity 3 88 0 4 1994 457 276 134 0 chr1 184800623 184800757 -12394675 + B3 SINE B2 35 186 -30 4 1994 5382 92 21 70 chr1 184801049 184801898 -12393534 + RLTR13C2 LTR ERVK 1 808 0 4 1994 2560 161 80 4 chr1 184802994 184803455 -12391977 - RLTR1 LTR ERV1 0 624 129 4 1994 708 237 8 0 chr1 184804094 184804225 -12391207 + RSINE1 SINE B4 1 132 -33 4 1994 261 57 0 0 chr1 184804995 184805030 -12390402 + (GGAGA)n Simple_repeat Simple_repeat 3 37 0 4 1994 330 318 50 38 chr1 184806371 184806531 -12388901 - MER5A1 DNA MER1_type -4 162 1 4 1994 357 250 313 23 chr1 184806685 184806816 -12388616 + MER5B DNA MER1_type 10 178 0 4 1994 230 281 0 10 chr1 184807546 184807650 -12387782 - Lx9 LINE L1 -84 7560 7458 4 1994 652 205 12 0 chr1 184807650 184807816 -12387616 + (TA)n Simple_repeat Simple_repeat 1 168 0 4 1994 180 0 0 0 chr1 184807831 184807851 -12387581 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1994 333 0 0 0 chr1 184807850 184807887 -12387545 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1994 233 242 118 24 chr1 184808023 184808150 -12387282 + L2 LINE L2 1638 1776 -1643 4 1994 1282 233 120 21 chr1 184808689 184809022 -12386410 + ORR1D2 LTR MaLR 5 370 0 4 1994 2285 163 8 51 chr1 184809840 184810235 -12385197 - ORR1C1 LTR MaLR 0 378 1 4 1994 611 317 52 49 chr1 184811037 184811387 -12384045 - ORR1E LTR MaLR 0 379 4 4 1995 262 310 0 0 chr1 184812037 184812124 -12383308 + L1MC LINE L1 3603 3689 -2457 4 1995 226 308 31 77 chr1 184812430 184812560 -12382872 - LTR85a LTR Gypsy? -415 287 164 4 1995 291 28 0 0 chr1 184812789 184812825 -12382607 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1995 967 262 30 60 chr1 184813210 184813239 -12382193 - B4 SINE B4 0 292 264 4 1995 504 0 0 0 chr1 184813239 184813295 -12382137 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1995 967 262 30 60 chr1 184813295 184813473 -12381959 - B4 SINE B4 -29 263 84 4 1995 279 0 0 0 chr1 184813473 184813504 -12381928 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1995 967 262 30 60 chr1 184813504 184813595 -12381837 - B4 SINE B4 -209 83 4 4 1995 432 55 0 0 chr1 184814933 184814988 -12380444 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1995 506 257 89 6 chr1 184815008 184815188 -12380244 - L1MB1 LINE L1 -273 5916 5722 5 1995 200 263 104 13 chr1 184816189 184816266 -12379166 + MIRb SINE MIR 115 198 -70 5 1995 322 278 93 25 chr1 184816807 184816925 -12378507 - MIR3 SINE MIR -71 137 12 5 1995 415 127 16 0 chr1 184819133 184819196 -12376236 + tRNA-Lys-AAG tRNA tRNA 13 76 0 5 1995 2476 149 45 7 chr1 184819199 184819624 -12375808 - BGLII_B LTR ERVK 0 441 1 5 1995 525 32 0 0 chr1 184820592 184820655 -12374777 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1995 513 47 0 0 chr1 184828886 184828950 -12366482 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1995 4191 82 30 0 chr1 184829093 184829652 -12365780 - MT2B2 LTR ERVL -8 576 1 5 1995 513 0 0 0 chr1 184830744 184830801 -12364631 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1995 360 339 18 18 chr1 184830876 184830990 -12364442 - ID_B1 SINE B4 -31 193 80 5 1995 737 245 151 31 chr1 184831053 184831272 -12364160 - L1MC2 LINE L1 -112 6232 5979 5 1995 609 14 0 0 chr1 184831272 184831342 -12364090 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1995 405 0 0 0 chr1 184831342 184831386 -12364046 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1995 737 245 151 31 chr1 184831386 184831515 -12363917 - L1MC2 LINE L1 -366 5978 5842 5 1995 229 262 145 12 chr1 184832089 184832171 -12363261 - PB1D10 SINE Alu -49 98 1 5 1995 310 354 22 35 chr1 184832209 184832388 -12363044 + MIR SINE MIR 50 233 -35 5 1995 317 316 111 40 chr1 184833087 184833285 -12362147 + MIR SINE MIR 32 243 -19 5 1995 923 248 9 88 chr1 184833461 184833687 -12361745 + ID_B1 SINE B4 12 219 -5 5 1995 700 301 168 39 chr1 184834915 184834935 -12360497 - Charlie4a DNA MER1_type -14 494 475 5 1995 2433 93 12 0 chr1 184834935 184835258 -12360174 - ORR1A2 LTR MaLR 0 327 1 5 1995 700 301 168 39 chr1 184835258 184835649 -12359783 - Charlie4a DNA MER1_type -34 474 30 5 1995 633 128 0 0 chr1 184835717 184835819 -12359613 + (TCCCC)n Simple_repeat Simple_repeat 4 105 0 5 1995 401 36 0 18 chr1 184836552 184836608 -12358824 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1995 279 0 0 0 chr1 184836608 184836639 -12358793 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1995 1014 290 96 12 chr1 184836639 184836984 -12358448 - MTEb LTR MaLR -3 376 3 5 1995 292 350 32 24 chr1 184837063 184837186 -12358246 + MLT1A LTR MaLR 164 287 -87 5 1995 855 282 85 26 chr1 184837757 184838099 -12357333 + Arthur1 DNA Tip100 3503 3864 -83 5 1995 215 265 0 0 chr1 184838422 184838471 -12356961 + G-rich Low_complexity Low_complexity 1 49 0 5 1995 273 293 24 24 chr1 184838980 184839064 -12356368 + MIR3 SINE MIR 110 193 -15 5 1995 872 295 145 39 chr1 184839880 184840451 -12354981 + L1MB3 LINE L1 5550 6181 -2 5 1995 457 321 102 80 chr1 184840562 184840887 -12354545 + ORR1E LTR MaLR 3 334 -25 5 1995 488 342 93 47 chr1 184841784 184842177 -12353255 - LTR16E2 LTR ERVL -6 562 126 5 1995 317 209 186 19 chr1 184842397 184842558 -12352874 + Lx9 LINE L1 7454 7641 -3 5 1995 440 267 32 75 chr1 184842733 184842903 -12352529 + MIRb SINE MIR 3 160 -102 5 1995 1051 314 27 9 chr1 184842975 184843301 -12352131 + MER2 DNA MER2_type 1 332 -13 5 1995 880 295 46 43 chr1 184843301 184843581 -12351851 + MTEb LTR MaLR 1 281 -98 5 1995 333 0 0 0 chr1 184843654 184843691 -12351741 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1995 741 267 58 68 chr1 184843691 184843975 -12351457 - ORR1E LTR MaLR -47 323 3 5 1995 432 0 0 0 chr1 184843982 184844030 -12351402 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1995 265 186 29 0 chr1 184844052 184844122 -12351310 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 5 1995 1184 274 93 35 chr1 184844230 184844349 -12351083 + L1ME2z LINE L1 5843 5967 -211 5 1995 333 0 0 0 chr1 184844349 184844386 -12351046 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1995 1184 265 101 39 chr1 184844386 184844750 -12350682 + L1ME2z LINE L1 5967 6355 -89 5 1995 824 277 59 0 chr1 184845346 184845548 -12349884 + ID_B1 SINE B4 3 216 -8 5 1995 236 351 52 0 chr1 184846075 184846152 -12349280 - ID4_ SINE ID 0 83 3 5 1995 479 216 71 65 chr1 184846506 184846665 -12348767 - ID_B1 SINE B4 -1 223 74 5 1995 1444 55 5 16 chr1 184846943 184847129 -12348303 - B2_Mm1t SINE B2 -7 186 3 5 1995 278 294 144 47 chr1 184847129 184847438 -12347994 - RLTR15 LTR ERVK -20 508 44 5 1995 355 322 47 22 chr1 184847753 184848074 -12347358 - L1M5 LINE L1 -1556 4590 4262 5 1995 332 321 112 51 chr1 184849742 184850018 -12345414 + ORR1E LTR MaLR 1 293 -66 5 1995 198 174 0 0 chr1 184850806 184850852 -12344580 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1995 901 256 71 36 chr1 184850863 184851143 -12344289 - B4 SINE B4 -2 290 1 5 1995 4079 145 44 26 chr1 184851451 184852122 -12343310 + Lx5 LINE L1 6354 7037 -13 5 1995 627 51 0 0 chr1 184852122 184852201 -12343231 + (CATA)n Simple_repeat Simple_repeat 2 80 0 5 1995 4079 145 44 26 chr1 184852201 184852214 -12343218 + Lx5 LINE L1 7038 7050 0 5 1995 705 67 0 0 chr1 184852269 184852373 -12343059 + (CA)n Simple_repeat Simple_repeat 1 104 0 5 1995 450 0 0 0 chr1 184853258 184853308 -12342124 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1995 862 281 47 16 chr1 184853788 184854045 -12341387 - MLT1A0 LTR MaLR -80 285 21 5 1995 1323 169 287 9 chr1 184854397 184854725 -12340707 - MTC LTR MaLR 0 421 3 5 1995 525 219 0 0 chr1 184854954 184855073 -12340359 + CT-rich Low_complexity Low_complexity 2 120 0 5 1995 1246 48 0 0 chr1 184855073 184855220 -12340212 - B1_Mus2 SINE Alu 0 147 1 5 1995 1181 75 0 0 chr1 184856524 184856671 -12338761 + B1_Mus2 SINE Alu 1 147 0 5 1995 207 0 0 0 chr1 184856681 184856704 -12338728 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1995 726 289 35 35 chr1 184856809 184857010 -12338422 + ID_B1 SINE B4 24 224 0 5 1995 348 276 52 76 chr1 184857390 184857604 -12337828 - MIRm SINE MIR -13 255 50 5 1995 254 240 26 13 chr1 184857783 184857859 -12337573 - L1MA5 LINE L1 -3 6297 6221 5 1995 468 220 18 0 chr1 184857984 184858092 -12337340 - B4A SINE B4 -7 285 173 5 1995 622 175 289 13 chr1 184858977 184859133 -12336299 + B3 SINE B2 5 203 -13 5 1995 756 100 0 0 chr1 184859133 184859253 -12336179 + (GA)n Simple_repeat Simple_repeat 2 121 0 5 1995 526 366 122 8 chr1 184859523 184859768 -12335664 + B4A SINE B4 3 275 -17 5 1995 204 258 16 16 chr1 184859817 184859880 -12335552 + GA-rich Low_complexity Low_complexity 2 64 0 5 1995 428 296 17 9 chr1 184860178 184860294 -12335138 + PB1D7 SINE Alu 4 120 0 5 1995 208 53 53 0 chr1 184860327 184860365 -12335067 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1995 639 319 124 8 chr1 184860509 184860759 -12334673 + MTEa LTR MaLR 13 291 -88 5 1995 820 301 4 63 chr1 184860775 184861027 -12334405 - B4A SINE B4 -55 237 1 5 1995 13486 80 14 8 chr1 184861474 184864142 -12331290 + L1VL2 LINE L1 96 2780 -835 5 1995 7167 105 19 7 chr1 184864129 184865155 -12330277 + Lx LINE L1 5615 6653 -1 5 1995 246 354 71 0 chr1 184866158 184866257 -12329175 + MIRc SINE MIR 16 121 -147 5 1995 269 299 50 133 chr1 184866666 184867005 -12328427 + MER46C DNA MER2_type 27 337 -1 5 1995 846 242 19 19 chr1 184867154 184867365 -12328067 - B3 SINE B2 -5 211 1 5 1995 229 279 87 37 chr1 184867402 184867518 -12327914 - Lx3B LINE L1 -1190 5783 5662 5 1995 431 214 34 0 chr1 184868552 184868641 -12326791 - PB1D9 SINE Alu 0 120 29 5 1995 1419 143 13 5 chr1 184869134 184869358 -12326074 + URR1A DNA MER1_type 1 226 0 5 1995 518 256 0 31 chr1 184869399 184869522 -12325910 + RSINE1 SINE B4 6 124 -41 5 1995 378 0 0 0 chr1 184869522 184869564 -12325868 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1995 374 311 39 0 chr1 184869628 184869731 -12325701 - MLT1A0 LTR MaLR -250 115 9 5 1995 2729 198 22 25 chr1 184869728 184870237 -12325195 + RLTR18B LTR ERVK 5 511 -1 5 1995 423 145 0 0 chr1 184871668 184871751 -12323681 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1995 669 292 194 18 chr1 184871896 184872283 -12323149 + Lx7 LINE L1 6646 7100 -596 5 1995 728 278 19 5 chr1 184872827 184873033 -12322399 + B3 SINE B2 3 211 -5 5 1995 236 265 29 29 chr1 184873044 184873114 -12322318 + BC1_Mm scRNA scRNA 2 71 -81 5 1995 694 278 51 11 chr1 184873053 184873231 -12322201 + ID_B1 SINE B4 12 196 -28 5 1995 182 268 159 23 chr1 184873421 184873509 -12321923 + L3 LINE CR1 2538 2637 -1852 5 1995 234 174 0 0 chr1 184873556 184873602 -12321830 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1995 1087 257 150 30 chr1 184873818 184874179 -12321253 - MTD LTR MaLR -14 405 2 5 1995 293 226 35 35 chr1 184874405 184874492 -12320940 - Lx9 LINE L1 -174 7470 7384 5 1995 675 250 0 60 chr1 184875148 184875348 -12320084 + B3A SINE B2 3 190 -8 5 1995 535 335 12 30 chr1 184875388 184875554 -12319878 - RSINE1 SINE B4 0 165 3 5 1995 534 91 0 0 chr1 184875621 184875698 -12319734 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1995 266 337 53 41 chr1 184875964 184876134 -12319298 - MIR SINE MIR -66 196 25 5 1995 778 280 18 46 chr1 184876418 184876635 -12318797 - ID_B1 SINE B4 -2 222 12 5 1995 193 291 216 52 chr1 184876925 184877193 -12318239 - L2 LINE L2 -410 3009 2698 5 1995 1087 225 108 22 chr1 184877289 184877557 -12317875 + B4A SINE B4 2 292 0 6 1995 206 333 0 0 chr1 184877568 184877634 -12317798 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1995 603 225 0 0 chr1 184877894 184878014 -12317418 + MLT2B3 LTR ERVL 1 120 -434 6 1995 521 279 121 97 chr1 184878067 184878397 -12317035 + ORR1E LTR MaLR 1 338 -21 6 1995 738 128 0 0 chr1 184878456 184878573 -12316859 + (TTC)n Simple_repeat Simple_repeat 1 117 0 6 1995 366 143 0 0 chr1 184878565 184878628 -12316804 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1995 818 283 32 69 chr1 184878772 184879049 -12316383 + MLT2B3 LTR ERVL 263 529 -25 6 1995 703 131 56 13 chr1 184879049 184879365 -12316067 + (TCTA)n Simple_repeat Simple_repeat 1 329 0 6 1995 556 269 8 0 chr1 184879376 184879506 -12315926 + MTEa LTR MaLR 1 131 -248 6 1995 445 316 127 54 chr1 184879614 184879835 -12315597 + MT2A LTR ERVL 292 528 -5 6 1995 322 363 48 7 chr1 184879865 184880012 -12315420 - MIRb SINE MIR -66 202 50 6 1995 1326 73 0 0 chr1 184880244 184880449 -12314983 + (TTCTCC)n Simple_repeat Simple_repeat 1 205 0 6 1995 1078 110 0 0 chr1 184880451 184880596 -12314836 - B1_Mus1 SINE Alu -1 147 3 6 1995 315 0 0 0 chr1 184880892 184880927 -12314505 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 6 1995 229 225 107 53 chr1 184880927 184881002 -12314430 - MTB LTR MaLR -173 227 149 6 1995 402 296 0 44 chr1 184882413 184882526 -12312906 - Tigger5 DNA MER2_type -5 2401 2294 6 1995 861 189 0 7 chr1 184882620 184882769 -12312663 + B3A SINE B2 1 148 -50 6 1995 251 54 27 0 chr1 184882769 184882806 -12312626 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1995 350 268 0 0 chr1 184882834 184882905 -12312527 - Tigger5 DNA MER2_type -2284 122 52 6 1995 353 296 0 0 chr1 184882942 184883023 -12312409 - RMER12 LTR ERVK -471 851 771 6 1995 200 167 0 0 chr1 184883023 184883053 -12312379 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1995 985 208 34 50 chr1 184884101 184884339 -12311093 + B4 SINE B4 13 246 -46 6 1995 396 0 0 0 chr1 184884358 184884402 -12311030 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1995 297 0 0 0 chr1 184886977 184887010 -12308422 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1995 329 310 60 0 chr1 184887115 184887132 -12308300 - ID_B1 SINE B4 -4 220 101 6 1995 376 237 83 31 chr1 184887132 184887228 -12308204 - B1F SINE Alu -29 120 20 6 1995 681 284 47 0 chr1 184887218 184887387 -12308045 - B3A SINE B2 -14 184 8 6 1995 205 309 41 31 chr1 184887499 184887596 -12307836 - MIR SINE MIR -159 103 6 6 1995 453 298 109 79 chr1 184888010 184888313 -12307119 - MamGypLTR1c LTR Gypsy -8 795 484 6 1995 191 268 103 11 chr1 184888899 184888986 -12306446 - MIR SINE MIR -131 131 37 6 1995 355 279 27 27 chr1 184890190 184890317 -12305115 - MIRb SINE MIR -99 169 39 6 1995 181 241 111 0 chr1 184890672 184890726 -12304706 + MER5A DNA MER1_type 10 69 -120 6 1995 377 262 165 54 chr1 184890730 184890972 -12304460 + B4A SINE B4 24 292 0 6 1995 194 372 11 0 chr1 184891155 184891249 -12304183 + MIR SINE MIR 50 144 -64 6 1995 391 213 90 98 chr1 184891797 184891909 -12303523 + PB1D10 SINE Alu 5 116 -1 6 1995 621 217 0 16 chr1 184892572 184892755 -12302677 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1995 602 289 21 16 chr1 184894443 184894636 -12300796 - ORR1E LTR MaLR -165 194 1 6 1995 339 85 0 0 chr1 184895545 184895592 -12299840 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 6 1995 670 229 21 0 chr1 184895592 184895732 -12299700 - ID_B1 SINE B4 0 224 82 6 1995 269 262 17 70 chr1 184895629 184895744 -12299688 - MT2B2 LTR ERVL -321 263 155 6 1995 459 308 66 160 chr1 184895750 184896144 -12299288 - L1MB4 LINE L1 -6 6174 5818 6 1995 243 88 0 0 chr1 184896227 184896261 -12299171 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1995 25 51 0 0 chr1 184896272 184896311 -12299121 + AT_rich Low_complexity Low_complexity 1 39 0 6 1995 1103 68 0 39 chr1 184896329 184896483 -12298949 - B1_Mus1 SINE Alu 0 148 1 6 1995 293 260 75 120 chr1 184896491 184896616 -12298816 - L1MB4 LINE L1 -359 5821 5674 6 1995 957 59 88 7 chr1 184896616 184896752 -12298680 + B1_Mm SINE Alu 1 147 0 6 1995 293 255 8 147 chr1 184896752 184896823 -12298609 - L1MB4 LINE L1 -498 5673 5618 6 1995 532 248 7 60 chr1 184896955 184897105 -12298327 + RMER30 DNA MER1_type 60 201 -1 6 1995 185 267 191 34 chr1 184897105 184897194 -12298238 + MER5B DNA MER1_type 76 178 0 6 1995 220 350 67 40 chr1 184897202 184897351 -12298081 - MER5A DNA MER1_type 0 189 37 6 1995 334 224 26 0 chr1 184897664 184897740 -12297692 + ID4 SINE ID 3 80 -3 6 1995 952 316 117 24 chr1 184897765 184898131 -12297301 + Tigger9b DNA MER2_type 83 493 -131 6 1995 375 78 0 0 chr1 184898131 184898182 -12297250 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1995 952 316 117 24 chr1 184898182 184898278 -12297154 + Tigger9b DNA MER2_type 494 588 -36 6 1995 211 306 0 0 chr1 184898420 184898469 -12296963 - ID4 SINE ID -15 68 20 6 1995 1043 87 81 0 chr1 184898832 184899005 -12296427 - B2_Mm1t SINE B2 0 193 7 6 1995 520 363 13 22 chr1 184899956 184900184 -12295248 + B4A SINE B4 67 292 0 6 1995 272 339 40 16 chr1 184900877 184901003 -12294429 - ORR1E LTR MaLR -212 147 19 6 1995 460 124 61 16 chr1 184901095 184901199 -12294233 - ORR1C2 LTR MaLR 0 421 310 6 1995 4120 37 2 0 chr1 184901199 184901710 -12293722 - L1_Mus1 LINE L1 -403 6164 5653 6 1995 2709 51 0 11 chr1 184901710 184902067 -12293365 + L1_Mus1 LINE L1 6215 6567 0 6 1995 345 186 0 0 chr1 184902074 184902144 -12293288 + GA-rich Low_complexity Low_complexity 2 71 0 6 1995 1204 213 82 16 chr1 184902144 184902450 -12292982 - ORR1C2 LTR MaLR -58 326 1 6 1995 367 211 13 0 chr1 184902986 184903062 -12292370 - ID4 SINE ID -3 80 4 6 1995 203 372 71 0 chr1 184906557 184906670 -12288762 + MIRb SINE MIR 63 183 -85 6 1995 708 123 8 8 chr1 184907070 184907193 -12288239 + RMER17C LTR ERVK 4 126 -284 6 1995 189 132 0 0 chr1 184908696 184908734 -12286698 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 6 1995 486 0 0 0 chr1 184908936 184908990 -12286442 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1995 492 339 42 5 chr1 184909037 184909287 -12286145 + L1M5 LINE L1 5350 5611 -551 6 1995 501 62 0 0 chr1 184909964 184910029 -12285403 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1995 644 297 0 0 chr1 184910033 184910171 -12285261 - RSINE1 SINE B4 -17 148 11 6 1995 474 284 26 33 chr1 184910488 184910641 -12284791 + RSINE1 SINE B4 4 155 -10 6 1995 691 231 31 25 chr1 184911737 184911897 -12283535 + RSINE1 SINE B4 5 165 0 6 1995 207 0 0 0 chr1 184911931 184911954 -12283478 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1995 317 316 51 14 chr1 184912311 184912449 -12282983 - MIRb SINE MIR -7 261 119 6 1995 421 265 10 0 chr1 184912966 184913064 -12282368 - ID_B1 SINE B4 -57 167 69 6 1995 242 305 0 24 chr1 184914626 184914710 -12280722 + (TGGG)n Simple_repeat Simple_repeat 3 84 0 6 1995 1025 146 15 6 chr1 184914713 184915053 -12280379 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 6 1995 1181 121 10 2 chr1 184915070 184915467 -12279965 + (TGGA)n Simple_repeat Simple_repeat 1 400 0 6 1995 293 308 13 0 chr1 184916075 184916153 -12279279 - ID4_ SINE ID -4 79 1 6 1995 334 256 0 11 chr1 184916168 184916259 -12279173 - PB1D10 SINE Alu -10 107 18 6 1995 441 0 0 0 chr1 184916298 184916347 -12279085 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1995 196 175 25 0 chr1 184917656 184917696 -12277736 + MIRm SINE MIR 114 154 -122 6 1995 924 218 66 0 chr1 184917698 184917895 -12277537 + ID_B1 SINE B4 2 211 -13 6 1995 183 184 0 0 chr1 184917906 184917944 -12277488 + G-rich Low_complexity Low_complexity 6 43 0 6 1995 288 317 35 47 chr1 184918332 184918501 -12276931 + MER31B LTR ERV1 184 350 -116 6 1995 419 233 146 8 chr1 184919465 184919595 -12275837 + B1_Mur1 SINE Alu 2 149 0 6 1995 938 62 0 0 chr1 184919602 184919730 -12275702 + B1_Mus1 SINE Alu 6 133 -15 6 1995 286 43 42 21 chr1 184919887 184919935 -12275497 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1995 219 88 0 0 chr1 184921741 184921775 -12273657 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1998 756 196 6 95 chr1 185327815 185327984 -11867448 - RSINE1 SINE B4 0 165 12 1 1998 293 197 164 15 chr1 185329703 185329770 -11865662 - ID4_ SINE ID -3 80 4 2 1998 1286 290 76 62 chr1 185329836 185330336 -11865096 - RMER5 LTR ERV1 0 534 28 3 1998 569 329 59 23 chr1 185330847 185331171 -11864261 + MLT1A0 LTR MaLR 11 361 -47 4 1998 292 160 0 20 chr1 185331447 185331498 -11863934 + Lx8 LINE L1 6874 6923 -550 5 1998 503 203 0 17 chr1 185331500 185331620 -11863812 + (TATATG)n Simple_repeat Simple_repeat 6 123 0 6 1998 188 88 59 0 chr1 185331616 185331650 -11863782 + (CATAT)n Simple_repeat Simple_repeat 2 37 0 7 1998 450 289 139 36 chr1 185331650 185331844 -11863588 + Lx8 LINE L1 6927 7140 -333 5 1998 2414 102 6 0 chr1 185331977 185332302 -11863130 + ORR1A2 LTR MaLR 1 327 0 8 1998 4196 101 2 31 chr1 185332397 185333002 -11862430 - LTRIS_Mus LTR ERV1 0 587 1 9 1998 214 273 75 15 chr1 185333479 185333546 -11861886 - PB1D10 SINE Alu -14 103 33 1 1998 576 225 130 0 chr1 185333502 185333640 -11861792 - ID_B1 SINE B4 -67 157 2 1 1998 733 345 10 48 chr1 185333722 185334017 -11861415 - B4A SINE B4 0 292 9 1 1998 288 266 94 5 chr1 185334456 185334577 -11860855 + MIRc SINE MIR 36 163 -45 1 1998 324 132 0 19 chr1 185334664 185334718 -11860714 - B1_Mur1 SINE Alu 0 149 97 1 1998 417 20 0 0 chr1 185335392 185335442 -11859990 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1999 946 244 20 115 chr1 185336286 185336591 -11858841 + MLT1B LTR MaLR 115 390 0 1 1999 1230 35 0 0 chr1 185337633 185337775 -11857657 - B1_Mus1 SINE Alu -6 142 1 1 1999 25 31 0 0 chr1 185337776 185337808 -11857624 + AT_rich Low_complexity Low_complexity 1 32 0 1 1999 293 362 23 75 chr1 185338313 185338486 -11856946 + MIRb SINE MIR 13 176 -100 1 1999 344 248 208 21 chr1 185339299 185339443 -11855989 + ID_B1 SINE B4 1 171 -53 2 1999 375 223 31 21 chr1 185339370 185339466 -11855966 + PB1D10 SINE Alu 20 116 -1 2 1999 787 270 115 29 chr1 185340066 185340379 -11855053 + Lx8 LINE L1 7132 7471 -2 2 1999 23 0 0 0 chr1 185340498 185340521 -11854911 + AT_rich Low_complexity Low_complexity 1 23 0 2 1999 313 253 10 87 chr1 185340552 185340656 -11854776 - PB1D10 SINE Alu -12 105 10 2 1999 576 132 0 23 chr1 185340809 185340941 -11854491 + (TA)n Simple_repeat Simple_repeat 2 130 0 2 1999 496 224 94 29 chr1 185340984 185341122 -11854310 - B1F SINE Alu -2 147 1 2 1999 268 342 47 47 chr1 185341383 185341576 -11853856 - MIRc SINE MIR -24 244 52 2 1999 330 331 75 30 chr1 185343008 185343142 -11852290 + MER21B LTR ERV1 6 145 -718 2 1999 1129 160 113 0 chr1 185343166 185343360 -11852072 - URR1A DNA MER1_type -4 222 7 2 1999 638 140 9 0 chr1 185344730 185344844 -11850588 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 1999 819 296 63 28 chr1 185345023 185345340 -11850092 - MTE2b LTR MaLR 0 379 52 3 1999 540 81 0 0 chr1 185346016 185346090 -11849342 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 3 1999 236 277 60 35 chr1 185346370 185346486 -11848946 - LTR16D LTR ERVL -21 630 512 3 1999 5372 120 27 54 chr1 185346561 185347492 -11847940 - RMER17A2 LTR ERVK 0 906 1 3 1999 2058 205 117 21 chr1 185347828 185348344 -11847088 - RMER19B LTR ERVK 0 902 25 3 1999 564 201 23 60 chr1 185348601 185348752 -11846680 + MT2A LTR ERVL 1 136 -465 3 1999 1179 105 8 8 chr1 185348883 185349239 -11846193 + (CA)n Simple_repeat Simple_repeat 1 355 0 3 1999 301 252 131 0 chr1 185349239 185349338 -11846094 + L1MA9 LINE L1 6152 6263 -49 3 1999 1055 199 51 42 chr1 185350084 185350299 -11845133 + ID_B1 SINE B4 5 221 -3 3 1999 290 282 24 13 chr1 185350960 185351074 -11844358 + Lx5 LINE L1 5800 5913 -1731 4 1999 776 178 0 22 chr1 185351075 185351259 -11844173 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1999 790 104 34 28 chr1 185351224 185351402 -11844030 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 4 1999 692 269 38 14 chr1 185351870 185352081 -11843351 - B3 SINE B2 0 216 1 4 1999 423 0 0 0 chr1 185352083 185352130 -11843302 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 4 1999 1167 106 41 6 chr1 185352158 185352329 -11843103 - B2_Mm2 SINE B2 -18 177 1 4 1999 1215 179 9 5 chr1 185352388 185352601 -11842831 - B3 SINE B2 -2 214 1 4 1999 455 239 52 104 chr1 185352912 185353066 -11842366 + MTE2a LTR MaLR 1 146 -233 4 1999 1164 261 115 28 chr1 185352993 185353406 -11842026 + MT2A LTR ERVL 71 554 0 4 1999 722 183 0 0 chr1 185353586 185353701 -11841731 + B3 SINE B2 1 115 -101 4 1999 204 179 0 0 chr1 185355691 185355730 -11839702 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1999 545 111 0 44 chr1 185355769 185355882 -11839550 + CT-rich Low_complexity Low_complexity 2 109 0 5 1999 1149 66 0 0 chr1 185355882 185356033 -11839399 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 5 1999 354 286 60 0 chr1 185356043 185356127 -11839305 - B1F SINE Alu -58 91 3 5 1999 241 284 48 87 chr1 185356127 185356142 -11839290 - MT2B2 LTR ERVL -335 244 150 5 1999 450 242 287 0 chr1 185356733 185356890 -11838542 - B3 SINE B2 -14 202 1 5 1999 434 217 12 0 chr1 185357099 185357182 -11838250 - MTEa LTR MaLR -19 360 277 5 1999 632 283 6 12 chr1 185357191 185357352 -11838080 - MTEa LTR MaLR -218 161 2 5 1999 425 309 127 15 chr1 185358806 185359003 -11836429 + MIR SINE MIR 26 244 -18 5 1999 414 268 27 21 chr1 185359065 185359183 -11836249 - B1F SINE Alu -7 142 24 5 1999 269 109 22 0 chr1 185359476 185359522 -11835910 + (TCTCC)n Simple_repeat Simple_repeat 1 47 0 5 1999 897 144 11 6 chr1 185359527 185359702 -11835730 + CT-rich Low_complexity Low_complexity 4 179 0 6 1999 967 286 85 115 chr1 185359795 185360396 -11835036 - L1MA5 LINE L1 -283 6017 5435 6 1999 470 253 41 8 chr1 185360460 185360596 -11834836 - B1F2 SINE Alu -7 140 1 6 1999 279 0 0 0 chr1 185360676 185360707 -11834725 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 1999 720 107 27 0 chr1 185360707 185360854 -11834578 - B2_Mm2 SINE B2 -37 179 12 6 1999 553 254 134 5 chr1 185360857 185360998 -11834434 - L1MA5 LINE L1 -895 5248 5086 6 1999 378 0 0 0 chr1 185360998 185361040 -11834392 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1999 553 254 134 5 chr1 185361040 185361100 -11834332 - L1MA5 LINE L1 -1058 5085 5022 6 1999 231 36 0 0 chr1 185361118 185361146 -11834286 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1999 272 206 95 0 chr1 185361146 185361209 -11834223 - ID4_ SINE ID -13 70 2 6 1999 324 0 0 0 chr1 185361695 185361731 -11833701 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 6 1999 828 191 0 0 chr1 185361735 185361913 -11833519 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 6 1999 293 296 131 38 chr1 185362072 185362255 -11833177 + MIRb SINE MIR 8 207 -61 7 1999 3127 198 67 28 chr1 185362281 185362953 -11832479 + RMER1B Other Other 367 1064 -2 7 1999 4494 16 0 0 chr1 185363238 185363731 -11831701 + MT2_Mm LTR ERVL 1 493 0 7 1999 48542 15 6 0 chr1 185363731 185369057 -11826375 + MERVL-int LTR ERVL 1 5360 -125 7 1999 395 167 46 35 chr1 185369057 185369144 -11826288 + ORR1A3-int LTR MaLR 553 640 -1323 7 1999 319 0 0 0 chr1 185369144 185369182 -11826250 + MERVL-int LTR ERVL 5448 5485 0 7 1999 4494 16 0 0 chr1 185369182 185369675 -11825757 + MT2_Mm LTR ERVL 1 493 0 7 1999 725 265 64 123 chr1 185369681 185370055 -11825377 - ORR1E LTR MaLR -3 356 5 7 1999 312 280 56 102 chr1 185370218 185370379 -11825053 - L3 LINE CR1 -415 4074 3922 7 1999 880 206 126 0 chr1 185370379 185370578 -11824854 - URR1B DNA MER1_type -1 224 1 7 1999 312 280 56 102 chr1 185370578 185370631 -11824801 - L3 LINE CR1 -568 3921 3870 7 1999 272 237 143 54 chr1 185372559 185372706 -11822726 + MTE2a LTR MaLR 205 364 -15 7 1999 605 271 95 57 chr1 185373596 185373858 -11821574 - B4 SINE B4 -18 274 3 7 1999 254 9 291 0 chr1 185373888 185373998 -11821434 + (CTAA)n Simple_repeat Simple_repeat 2 143 0 7 1999 626 255 75 57 chr1 185374315 185374527 -11820905 - ID_B1 SINE B4 -2 222 7 8 1999 190 349 69 50 chr1 185374591 185374751 -11820681 + MER5A DNA MER1_type 1 163 -26 8 1999 584 267 112 56 chr1 185375155 185375405 -11820027 + MER74B LTR ERVL 90 353 -269 8 1999 345 339 65 6 chr1 185376934 185377103 -11818329 - ERVL-B4-int LTR ERVL -1324 4390 4212 8 1999 401 121 0 0 chr1 185377501 185377559 -11817873 - URR1B DNA MER1_type 0 225 168 8 1999 772 234 161 95 chr1 185377563 185377993 -11817439 + RMER4A LTR ERVK 1 458 -8 8 1999 929 137 110 7 chr1 185378004 185378158 -11817274 - URR1B DNA MER1_type -56 169 1 8 1999 655 221 86 32 chr1 185379002 185379189 -11816243 - B3A SINE B2 0 198 2 8 1999 3018 43 52 0 chr1 185380636 185381005 -11814427 + RLTR10 LTR ERVK 1 388 -2 8 1999 404 219 121 40 chr1 185381224 185381348 -11814084 + MER20 DNA MER1_type 1 134 -85 8 1999 193 283 116 54 chr1 185381363 185381475 -11813957 - L3 LINE CR1 -193 4296 4178 8 1999 488 311 102 115 chr1 185381568 185381742 -11813690 - ORR1E LTR MaLR 0 359 217 9 1999 962 94 92 25 chr1 185381742 185381905 -11813527 + Lx LINE L1 6479 6652 -2 9 1999 488 311 102 115 chr1 185381905 185382094 -11813338 - ORR1E LTR MaLR -143 216 1 9 1999 536 291 16 69 chr1 185382104 185382292 -11813140 + MLT1C LTR MaLR 290 467 0 9 1999 208 186 34 0 chr1 185383126 185383185 -11812247 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1999 345 150 72 0 chr1 185383309 185383476 -11811956 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 9 1999 565 281 52 7 chr1 185383501 185383655 -11811777 - RSINE1 SINE B4 0 165 5 9 1999 258 136 0 0 chr1 185384122 185384166 -11811266 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 9 1999 975 247 5 20 chr1 185384188 185384386 -11811046 - B3 SINE B2 -21 195 1 9 1999 617 302 66 5 chr1 185384608 185384821 -11810611 + MIRc SINE MIR 38 263 -5 9 1999 700 279 83 6 chr1 185386064 185386244 -11809188 + B4 SINE B4 3 196 -96 9 1999 1069 243 0 0 chr1 185386278 185386492 -11808940 + B3 SINE B2 2 215 -1 1 1999 644 90 0 20 chr1 185386559 185386661 -11808771 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 1 1999 459 135 0 0 chr1 185386698 185386794 -11808638 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1999 1529 188 11 15 chr1 185388048 185388342 -11807090 + RLTR10E LTR ERVK 1 325 -32 1 1999 2573 97 47 42 chr1 185388342 185388751 -11806681 + IAPLTR2a LTR ERVK 1 411 0 1 1999 823 229 85 88 chr1 185388751 185388786 -11806646 + RLTR10E LTR ERVK 326 355 -2 1 1999 3602 46 7 9 chr1 185388801 185389238 -11806194 + IAPEz-int LTR ERVK 70 505 -5976 1 1999 50747 11 1 0 chr1 185389206 185394710 -11800722 + IAPEz-int LTR ERVK 972 6481 0 1 1999 2585 89 49 44 chr1 185394710 185395119 -11800313 + IAPLTR2a LTR ERVK 1 411 0 1 1999 230 118 0 0 chr1 185395119 185395153 -11800279 + RLTR46 LTR ERVK 287 320 0 1 1999 2145 93 17 91 chr1 185395520 185395708 -11799724 - ORR1A2 LTR MaLR 0 327 168 1 1999 1423 69 16 11 chr1 185395708 185395898 -11799534 - B2_Mm2 SINE B2 -3 192 2 1 1999 2145 93 17 91 chr1 185395898 185396062 -11799370 - ORR1A2 LTR MaLR -160 167 1 1 1999 261 57 0 0 chr1 185396163 185396198 -11799234 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1999 670 299 6 12 chr1 185396199 185396365 -11799067 - B3A SINE B2 -33 165 1 1 1999 1363 98 102 5 chr1 185396461 185396667 -11798765 + URR1A DNA MER1_type 1 226 0 1 1999 1407 235 24 24 chr1 185399085 185399427 -11796005 - ORR1D2 LTR MaLR 0 370 29 1 1999 330 26 0 0 chr1 185399427 185399466 -11795966 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 1 1999 1407 235 24 24 chr1 185399466 185399493 -11795939 - ORR1D2 LTR MaLR -342 28 1 1 1999 375 253 158 40 chr1 185399537 185399689 -11795743 + MLT1H1 LTR MaLR 1 170 -385 1 1999 237 179 36 0 chr1 185399691 185399747 -11795685 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1999 239 266 25 25 chr1 185399969 185400050 -11795382 + ID4 SINE ID 2 82 -1 1 1999 540 0 0 0 chr1 185400288 185400348 -11795084 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1999 369 312 21 0 chr1 185400350 185400446 -11794986 - PB1D10 SINE Alu -16 101 4 1 1999 296 317 0 12 chr1 185400613 185400696 -11794736 + B4A SINE B4 41 122 -170 1 1999 789 325 167 18 chr1 185402658 185403172 -11792260 + L2 LINE L2 1209 1799 -1620 1 1999 830 285 99 16 chr1 185403174 185403488 -11791944 + Lx8 LINE L1 6898 7237 -236 1 1999 297 218 29 17 chr1 185403570 185403663 -11791769 + B1F SINE Alu 13 123 -26 1 1999 25 83 0 0 chr1 185404130 185404190 -11791242 + AT_rich Low_complexity Low_complexity 1 60 0 1 1999 333 0 0 0 chr1 185404210 185404247 -11791185 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1999 577 258 7 29 chr1 185404249 185404385 -11791047 - RSINE1 SINE B4 -29 136 4 1 1999 414 322 33 0 chr1 185404775 185404896 -11790536 + ID_B1 SINE B4 86 210 -14 1 1999 753 223 127 12 chr1 185404959 185405204 -11790228 - B4A SINE B4 -16 276 4 1 1999 190 233 23 0 chr1 185406162 185406248 -11789184 + CT-rich Low_complexity Low_complexity 2 89 0 1 1999 235 323 0 0 chr1 185406769 185406834 -11788598 + RMER30 DNA MER1_type 137 201 -1 1 1999 234 0 0 0 chr1 185407984 185408010 -11787422 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1999 332 348 87 122 chr1 185410142 185410235 -11785197 + B4A SINE B4 1 83 -209 1 1999 738 211 7 7 chr1 185410235 185410383 -11785049 + B1_Mur3 SINE Alu 2 149 0 1 1999 332 348 87 122 chr1 185410383 185410577 -11784855 + B4A SINE B4 84 278 -14 1 1999 291 296 12 0 chr1 185410981 185411062 -11784370 + ID4 SINE ID 2 83 0 1 1999 242 354 31 8 chr1 185411227 185411355 -11784077 + L2c LINE L2 3029 3159 -228 1 1999 181 259 105 86 chr1 185411926 185412078 -11783354 - L3 LINE CR1 -835 3654 3500 1 1999 395 230 11 54 chr1 185413123 185413215 -11782217 + RSINE1 SINE B4 23 110 -55 1 1999 2232 97 74 26 chr1 185413350 185413701 -11781731 + RLTR9A LTR ERVK 1 368 0 1 1999 868 251 18 18 chr1 185414372 185414591 -11780841 + ID_B1 SINE B4 1 219 -5 1 1999 257 51 26 0 chr1 185414606 185414645 -11780787 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 1 1999 827 244 198 41 chr1 185415835 185416250 -11779182 + RMER20B LTR ERVK 126 605 -22 1 1999 490 265 27 68 chr1 185416545 185416603 -11778829 - MTC LTR MaLR -257 164 115 1 1999 1157 69 7 0 chr1 185416603 185416748 -11778684 + B1_Mus1 SINE Alu 1 146 -2 1 1999 186 43 0 0 chr1 185416748 185416771 -11778661 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1999 490 265 27 68 chr1 185416771 185416857 -11778575 - MTC LTR MaLR -307 114 26 1 1999 330 234 37 49 chr1 185416900 185416981 -11778451 - B1F SINE Alu -17 132 53 1 1999 424 307 122 25 chr1 185416976 185417173 -11778259 - B4A SINE B4 -72 220 5 1 1999 225 316 0 0 chr1 185417612 185417669 -11777763 - B4 SINE B4 -212 80 24 1 1999 2003 107 90 3 chr1 185418112 185418413 -11777019 - ORR1A2 LTR MaLR 0 327 1 1 1999 259 342 0 0 chr1 185419902 185419978 -11775454 - MER21B LTR ERV1 -771 92 17 1 1999 683 238 27 20 chr1 185419999 185420149 -11775283 + B3A SINE B2 2 152 -46 1 1999 243 0 0 0 chr1 185420150 185420177 -11775255 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1999 612 301 73 6 chr1 185420668 185420704 -11774728 - B3 SINE B2 0 216 180 1 1999 411 21 0 0 chr1 185420704 185420752 -11774680 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1 1999 612 301 73 6 chr1 185420752 185420892 -11774540 - B3 SINE B2 -37 179 28 1 1999 215 156 21 62 chr1 185420892 185420929 -11774503 + polypyrimidine Low_complexity Low_complexity 11 47 0 1 1999 934 129 6 6 chr1 185420929 185421093 -11774339 + (TTCC)n Simple_repeat Simple_repeat 4 167 0 1 1999 711 95 0 0 chr1 185421112 185421217 -11774215 + (TCC)n Simple_repeat Simple_repeat 1 105 0 1 1999 207 360 43 26 chr1 185424790 185424907 -11770525 - L2b LINE L2 -19 3356 3238 1 1999 1099 244 30 44 chr1 185425274 185425570 -11769862 - B4A SINE B4 0 292 1 1 1999 347 296 114 55 chr1 185426228 185426482 -11768950 - L1ME3A LINE L1 -128 6045 5777 1 1999 401 319 72 77 chr1 185426587 185426839 -11768593 - B4A SINE B4 -16 276 1 1 1999 264 171 32 54 chr1 185426987 185427080 -11768352 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 1 1999 372 269 109 40 chr1 185427080 185427254 -11768178 - L1ME3A LINE L1 -730 5443 5258 1 1999 593 27 13 0 chr1 185427427 185427502 -11767930 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 1 1999 561 15 0 0 chr1 185427674 185427740 -11767692 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 1 1999 733 119 0 35 chr1 185427743 185427856 -11767576 - B1_Mur4 SINE Alu -19 131 23 1 1999 622 277 180 8 chr1 185427860 185428260 -11767172 - L1MEg LINE L1 -4508 1576 1108 1 1999 401 328 117 72 chr1 185428377 185429234 -11766198 - L1MEg LINE L1 -5136 948 54 1 1999 828 94 0 0 chr1 185429292 185429420 -11766012 + (TG)n Simple_repeat Simple_repeat 2 129 0 1 1999 301 262 0 15 chr1 185429420 185429486 -11765946 - ID4 SINE ID -14 69 5 1 1999 189 94 0 0 chr1 185430270 185430302 -11765130 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1999 896 316 5 0 chr1 185430718 185430930 -11764502 + ID_B1 SINE B4 7 219 -5 1 1999 183 349 15 0 chr1 185430975 185431041 -11764391 + L2a LINE L2 3352 3418 -8 1 1999 266 291 74 33 chr1 185431053 185431174 -11764258 - MLT1A1 LTR MaLR -10 398 273 1 1999 2992 167 52 4 chr1 185431688 185432205 -11763227 + Lx LINE L1 6110 6651 -3 1 1999 1164 182 231 10 chr1 185432339 185432634 -11762798 - MTD LTR MaLR 0 419 60 1 1999 242 247 158 12 chr1 185433714 185433796 -11761636 - MER20 DNA MER1_type -17 202 109 1 1999 553 243 67 7 chr1 185434692 185434841 -11760591 - MER5A1 DNA MER1_type 0 166 9 1 1999 376 194 9 18 chr1 185435088 185435198 -11760234 + (TATG)n Simple_repeat Simple_repeat 2 110 0 1 1999 1027 258 70 8 chr1 185435228 185435486 -11759946 - B4A SINE B4 -13 279 6 1 1999 266 242 0 15 chr1 185435665 185435732 -11759700 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1999 1108 214 5 9 chr1 185436165 185436382 -11759050 - ID_B1 SINE B4 -7 217 2 1 1999 1193 234 54 30 chr1 185436697 185437067 -11758365 - MTEb LTR MaLR 0 379 1 1 1999 431 244 67 20 chr1 185437114 185437237 -11758195 + B1F1 SINE Alu 1 126 -1 1 1999 433 376 33 16 chr1 185437296 185437480 -11757952 - MER20 DNA MER1_type -31 188 2 1 1999 543 192 10 10 chr1 185437867 185437967 -11757465 + MTC LTR MaLR 1 100 -321 1 1999 791 158 0 7 chr1 185437968 185438115 -11757317 + CT-rich Low_complexity Low_complexity 4 149 0 1 1999 1399 84 21 0 chr1 185438115 185438306 -11757126 - B2_Mm2 SINE B2 0 195 1 1 1999 1942 141 17 3 chr1 185438310 185438610 -11756822 + MTC LTR MaLR 110 413 -8 1 1999 556 286 57 78 chr1 185438719 185439026 -11756406 + B4 SINE B4 2 274 -18 1 1999 431 35 0 17 chr1 185439044 185439102 -11756330 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1999 324 0 0 0 chr1 185439102 185439138 -11756294 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1999 25 0 0 0 chr1 185439200 185439225 -11756207 + AT_rich Low_complexity Low_complexity 1 25 0 1 1999 412 376 0 0 chr1 185439330 185439508 -11755924 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1999 299 219 47 12 chr1 185441129 185441300 -11754132 + GA-rich Low_complexity Low_complexity 2 178 0 1 1999 391 375 0 0 chr1 185441216 185441442 -11753990 + (GGGTG)n Simple_repeat Simple_repeat 1 226 0 1 1999 384 202 61 0 chr1 185441366 185441529 -11753903 + (CAGG)n Simple_repeat Simple_repeat 4 176 0 1 1999 345 203 61 0 chr1 185441546 185441694 -11753738 + (CAGG)n Simple_repeat Simple_repeat 4 160 0 1 1999 390 202 61 0 chr1 185441711 185441874 -11753558 + (CAGG)n Simple_repeat Simple_repeat 4 176 0 1 1999 419 196 61 0 chr1 185441906 185442069 -11753363 + (CAGG)n Simple_repeat Simple_repeat 4 176 0 1 1999 2209 132 33 11 chr1 185442397 185442756 -11752676 + ORR1B2 LTR MaLR 1 367 0 1 1999 1326 262 36 36 chr1 185442843 185443203 -11752229 - MTD LTR MaLR -55 364 5 1 1999 299 268 40 20 chr1 185443818 185443917 -11751515 - L1MB4 LINE L1 -4 6176 6076 1 1999 383 269 28 9 chr1 185443919 185444028 -11751404 - RSINE1 SINE B4 -52 113 3 1 1999 355 191 71 41 chr1 185444030 185444128 -11751304 - L1M4c LINE L1 -4828 1556 1456 1 1999 680 212 5 5 chr1 185444637 185444848 -11750584 + (TG)n Simple_repeat Simple_repeat 1 211 0 1 1999 4422 26 0 0 chr1 185444848 185445341 -11750091 + MT2_Mm LTR ERVL 1 493 0 1 1999 680 201 0 22 chr1 185445341 185445477 -11749955 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 1999 376 260 177 87 chr1 185445496 185445761 -11749671 - B4 SINE B4 0 292 4 2 1999 409 347 11 23 chr1 185446249 185446423 -11749009 + LTR40a LTR ERVL 1 172 -293 2 1999 492 290 43 49 chr1 185446444 185446629 -11748803 + LTR40a LTR ERVL 314 497 -22 2 1999 292 265 125 19 chr1 185447328 185447432 -11748000 - PB1D10 SINE Alu -1 116 2 2 1999 869 275 13 50 chr1 185449026 185449325 -11746107 + B4A SINE B4 1 288 -4 2 1999 180 125 0 0 chr1 185449353 185449385 -11746047 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1999 348 209 0 0 chr1 185449403 185449489 -11745943 + GA-rich Low_complexity Low_complexity 5 90 0 2 1999 315 0 0 0 chr1 185449839 185449874 -11745558 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1999 369 58 0 0 chr1 185450067 185450119 -11745313 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1999 22 0 0 0 chr1 185450343 185450365 -11745067 + AT_rich Low_complexity Low_complexity 1 22 0 2 1999 324 324 46 56 chr1 185450565 185450781 -11744651 - MLT1C LTR MaLR -33 434 221 2 1999 451 232 70 35 chr1 185451069 185451212 -11744220 + B1F SINE Alu 2 149 0 2 1999 450 381 0 0 chr1 185451346 185451502 -11743930 - MLT1H1 LTR MaLR -66 489 334 2 1999 296 218 52 94 chr1 185451502 185451598 -11743834 + MTEa LTR MaLR 1 92 -287 2 1999 235 131 0 0 chr1 185451803 185451851 -11743581 + B1F SINE Alu 68 144 -5 2 1999 300 252 177 25 chr1 185451885 185451925 -11743507 - L1M4 LINE L1 -1118 5028 4983 2 1999 417 20 0 0 chr1 185451925 185451975 -11743457 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1999 300 252 177 25 chr1 185451975 185452137 -11743295 - L1M4 LINE L1 -1164 4982 4796 2 1999 1335 64 0 0 chr1 185452396 185452760 -11742672 + (TCTA)n Simple_repeat Simple_repeat 1 364 0 2 1999 180 0 0 0 chr1 185452760 185452780 -11742652 + (CCTA)n Simple_repeat Simple_repeat 1 20 0 2 1999 721 230 68 5 chr1 185453198 185453390 -11742042 + B3 SINE B2 4 207 -9 2 1999 396 0 0 0 chr1 185453423 185453467 -11741965 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1999 352 312 169 7 chr1 185454312 185454454 -11740978 + B3A SINE B2 1 165 -33 2 1999 279 79 0 0 chr1 185454691 185454729 -11740703 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 1999 216 273 18 0 chr1 185454938 185454993 -11740439 + PB1D7 SINE Alu 1 56 -64 2 1999 324 0 0 0 chr1 185455022 185455058 -11740374 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1999 225 225 83 48 chr1 185455303 185455387 -11740045 - PB1D7 SINE Alu -1 119 33 2 1999 778 309 83 0 chr1 185455491 185455769 -11739663 - MER2 DNA MER2_type -1 344 44 2 1999 527 288 42 30 chr1 185456156 185456324 -11739108 + B4 SINE B4 39 208 -84 2 1999 555 66 0 0 chr1 185456375 185456451 -11738981 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1999 552 279 45 0 chr1 185456457 185456636 -11738796 + Tigger5 DNA MER2_type 2219 2405 -1 2 1999 2968 62 10 3 chr1 185456795 185457185 -11738247 - L1_Mus3 LINE L1 -3 6635 6243 2 1999 644 132 0 30 chr1 185457227 185457360 -11738072 + CT-rich Low_complexity Low_complexity 2 130 0 2 1999 1190 89 90 90 chr1 185458377 185458599 -11736833 + URR1A DNA MER1_type 5 226 0 2 1999 498 86 0 0 chr1 185459265 185459346 -11736086 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 2 1999 731 198 36 0 chr1 185460028 185460195 -11735237 - Lx8 LINE L1 -306 7167 6995 2 1999 225 0 0 0 chr1 185460813 185460838 -11734594 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1999 606 273 45 6 chr1 185461065 185461242 -11734190 - MTE2a LTR MaLR -1 378 195 2 1999 463 285 57 96 chr1 185461318 185461563 -11733869 - MTE2a LTR MaLR -152 267 5 2 1999 210 71 0 0 chr1 185462103 185462131 -11733301 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1999 375 23 0 0 chr1 185462150 185462194 -11733238 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1999 733 221 14 7 chr1 185462194 185462340 -11733092 - B3A SINE B2 -50 148 2 2 1999 1839 214 71 3 chr1 185462361 185462803 -11732629 + Lx4B LINE L1 6586 7003 -55 2 1999 288 284 213 29 chr1 185462877 185463051 -11732381 + ORR1E LTR MaLR 31 236 -123 2 1999 772 227 80 10 chr1 185463690 185463890 -11731542 - B3 SINE B2 0 216 3 2 1999 405 0 0 0 chr1 185464143 185464188 -11731244 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1999 492 119 18 9 chr1 185464853 185464963 -11730469 + (TC)n Simple_repeat Simple_repeat 2 112 0 2 1999 195 42 0 0 chr1 185464976 185465000 -11730432 + (TATG)n Simple_repeat Simple_repeat 3 26 0 2 1999 326 61 20 0 chr1 185465287 185465336 -11730096 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 1999 3093 30 0 64 chr1 185465568 185465958 -11729474 - RLTR10B2 LTR ERVK 0 365 1 2 1999 507 56 0 0 chr1 185466685 185466756 -11728676 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1999 189 0 0 0 chr1 185466756 185466776 -11728656 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 249 401 308 45 0 chr1 185466776 185466909 -11728523 - B3A SINE B2 -57 141 3 2 2000 221 286 0 0 chr1 185467330 185467386 -11728046 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 2000 571 48 12 12 chr1 185467453 185467537 -11727895 - B1_Mus2 SINE Alu -1 146 63 2 2000 309 169 0 0 chr1 185468799 185468858 -11726574 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 2 2000 628 288 74 17 chr1 185468942 185469172 -11726260 - B4A SINE B4 -6 286 44 2 2000 1319 84 10 204 chr1 185469175 185469474 -11725958 - L1_Mus1 LINE L1 0 6567 6327 2 2000 32364 91 34 8 chr1 185469463 185474628 -11720804 - L1Md_A LINE L1 -347 5536 238 2 2000 294 267 39 46 chr1 185475107 185475260 -11720172 - Lx8 LINE L1 -2 7471 7320 2 2000 273 212 0 43 chr1 185475241 185475310 -11720122 - L1MA5 LINE L1 0 6300 6235 2 2000 24 0 0 0 chr1 185475320 185475344 -11720088 + AT_rich Low_complexity Low_complexity 1 24 0 2 2000 663 309 33 46 chr1 185475435 185475480 -11719952 + L1M2 LINE L1 5256 5295 -1002 2 2000 1005 230 33 5 chr1 185475480 185475690 -11719742 + B3 SINE B2 1 216 0 2 2000 663 309 33 46 chr1 185475690 185476011 -11719421 + L1M2 LINE L1 5296 5617 -680 2 2000 488 335 50 0 chr1 185476117 185476296 -11719136 - MLT1B LTR MaLR -161 229 42 2 2000 785 40 10 0 chr1 185476308 185476409 -11719023 + (TCTCC)n Simple_repeat Simple_repeat 4 105 0 2 2000 230 299 60 0 chr1 185476428 185476495 -11718937 - ID4 SINE ID -11 72 2 2 2000 500 259 49 35 chr1 185476505 185476649 -11718783 - B1F SINE Alu -1 148 3 2 2000 232 244 180 42 chr1 185476695 185476934 -11718498 - L1MC LINE L1 -2116 4030 3759 2 2000 316 252 38 30 chr1 185476934 185477065 -11718367 + Charlie10 DNA MER1_type 696 827 -1995 2 2000 513 295 290 39 chr1 185477141 185477580 -11717852 + Charlie10 DNA MER1_type 955 1503 -1319 2 2000 27 0 0 0 chr1 185477615 185477642 -11717790 + AT_rich Low_complexity Low_complexity 1 27 0 2 2000 714 298 54 4 chr1 185477721 185478001 -11717431 + Charlie10 DNA MER1_type 1659 1952 -870 2 2000 7333 72 10 8 chr1 185478367 185479398 -11716034 + L1_Mus1 LINE L1 5393 6425 -142 2 2000 3290 36 5 10 chr1 185479398 185479796 -11715636 - MTA_Mm LTR MaLR 0 396 1 2 2000 7333 77 7 15 chr1 185479796 185479941 -11715491 + L1_Mus1 LINE L1 6426 6567 0 2 2000 468 213 23 54 chr1 185480307 185480436 -11714996 + MTEa LTR MaLR 255 379 0 2 2000 182 118 29 0 chr1 185480571 185480605 -11714827 + (CGGGGG)n Simple_repeat Simple_repeat 3 37 0 2 2000 1034 72 23 0 chr1 185483452 185483718 -11711714 + (TCTA)n Simple_repeat Simple_repeat 1 272 0 2 2000 895 109 31 8 chr1 185483734 185484258 -11711174 + (TCTA)n Simple_repeat Simple_repeat 1 536 0 2 2000 234 0 0 0 chr1 185485534 185485560 -11709872 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 2000 185 111 0 53 chr1 185486999 185487037 -11708395 + T-rich Low_complexity Low_complexity 2 37 0 2 2000 1174 68 7 0 chr1 185487053 185487199 -11708233 - B1_Mm SINE Alu 0 147 1 2 2000 3742 42 0 22 chr1 185487201 185487662 -11707770 - L1_Mus1 LINE L1 0 6567 6117 2 2000 592 222 11 81 chr1 185487892 185488078 -11707354 - L1MA5 LINE L1 -439 5861 5689 2 2000 2018 106 42 71 chr1 185488329 185488665 -11706767 - ORR1A3 LTR MaLR 0 326 1 2 2000 1816 152 109 3 chr1 185488750 185489081 -11706351 - ORR1B2 LTR MaLR 0 367 2 2 2000 23 97 0 0 chr1 185489167 185489239 -11706193 + AT_rich Low_complexity Low_complexity 1 72 0 2 2000 1155 62 0 7 chr1 185489669 185489816 -11705616 - B1_Mus2 SINE Alu -1 146 1 2 2000 378 61 0 0 chr1 185489876 185489925 -11705507 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 2 2000 284 0 28 0 chr1 185489925 185489961 -11705471 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 2000 291 277 136 45 chr1 185489994 185490149 -11705283 - L1M7 LINE L1 -3666 2549 2381 2 2000 785 124 0 8 chr1 185490153 185490283 -11705149 + (TTCC)n Simple_repeat Simple_repeat 3 131 0 2 2000 251 258 76 90 chr1 185490283 185490518 -11704914 - L1M7 LINE L1 -3824 2391 2150 2 2000 348 24 0 0 chr1 185490518 185490559 -11704873 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 2 2000 249 258 76 90 chr1 185490559 185490613 -11704819 - L1M7 LINE L1 -4066 2149 2107 2 2000 895 230 49 0 chr1 185490624 185490679 -11704753 - B3 SINE B2 0 216 153 2 2000 195 42 0 0 chr1 185490679 185490703 -11704729 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 2000 895 230 49 0 chr1 185490703 185490851 -11704581 - B3 SINE B2 -64 152 4 2 2000 1005 213 63 12 chr1 185491149 185491452 -11703980 - L1MA4 LINE L1 -275 6025 5709 2 2000 222 37 0 0 chr1 185491698 185491725 -11703707 + (T)n Simple_repeat Simple_repeat 1 27 0 2 2000 279 271 10 40 chr1 185492015 185492115 -11703317 - MER58A DNA MER1_type -83 141 45 2 2000 504 72 0 0 chr1 185492432 185492501 -11702931 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2 2000 265 233 176 14 chr1 185492521 185492595 -11702837 - PB1D10 SINE Alu -27 90 5 2 2000 923 196 110 75 chr1 185493019 185493300 -11702132 + B4 SINE B4 2 292 0 2 2000 216 0 0 0 chr1 185494108 185494132 -11701300 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 2000 902 134 115 6 chr1 185494349 185494514 -11700918 + URR1A DNA MER1_type 37 219 -7 2 2000 255 233 26 52 chr1 185494533 185494610 -11700822 + ID4 SINE ID 2 76 -7 2 2000 253 259 65 0 chr1 185495129 185495237 -11700195 + MLT1A1 LTR MaLR 20 134 -274 2 2000 226 364 0 17 chr1 185495380 185495500 -11699932 + MLT1A1 LTR MaLR 291 408 0 2 2000 557 136 28 21 chr1 185495783 185495926 -11699506 + CT-rich Low_complexity Low_complexity 1 144 0 3 2000 186 43 0 0 chr1 185497793 185497816 -11697616 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 2000 245 354 167 15 chr1 185499157 185499355 -11696077 - Kanga1a DNA Tc2 -492 262 35 3 2000 798 176 0 0 chr1 185499470 185499623 -11695809 + CT-rich Low_complexity Low_complexity 3 155 0 3 2000 924 111 37 0 chr1 185499642 185499777 -11695655 - B1_Mur3 SINE Alu -9 140 1 3 2000 2471 173 54 10 chr1 185500012 185500102 -11695330 - RLTR16 LTR ERVK 0 505 417 1 2000 330 26 0 0 chr1 185500102 185500141 -11695291 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 2000 2471 173 54 10 chr1 185500141 185500534 -11694898 - RLTR16 LTR ERVK -89 416 2 1 2000 645 185 6 27 chr1 185501856 185502039 -11693393 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2000 583 201 29 0 chr1 185502051 185502225 -11693207 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2000 634 302 91 28 chr1 185502258 185502510 -11692922 - B4A SINE B4 -18 274 7 4 2000 3089 35 0 11 chr1 185502669 185503041 -11692391 + L1Md_F3 LINE L1 6217 6584 0 5 2000 721 278 101 77 chr1 185503061 185503425 -11692007 + MTE2a LTR MaLR 20 402 -17 6 2000 180 0 0 0 chr1 185503493 185503513 -11691919 + (T)n Simple_repeat Simple_repeat 1 20 0 7 2000 41 0 0 0 chr1 185505406 185505447 -11689985 + AT_rich Low_complexity Low_complexity 1 41 0 8 2000 422 85 0 0 chr1 185505496 185505555 -11689877 + ORR1B1 LTR MaLR 1 59 -335 9 2000 1757 145 40 0 chr1 185506106 185506410 -11689022 + ORR1B1 LTR MaLR 79 394 0 9 2000 28 48 0 0 chr1 185506517 185506559 -11688873 + AT_rich Low_complexity Low_complexity 1 42 0 1 2000 1802 103 0 0 chr1 185506828 185507071 -11688361 - Lx2 LINE L1 -427 6570 6328 1 2000 567 181 0 0 chr1 185507081 185507175 -11688257 - B1_Mur3 SINE Alu -46 103 10 1 2000 529 231 39 93 chr1 185507179 185507228 -11688204 - B2_Mm2 SINE B2 -1 194 146 1 2000 234 62 0 0 chr1 185507228 185507260 -11688172 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 2000 695 264 55 0 chr1 185507260 185507415 -11688017 - B3A SINE B2 -35 163 2 1 2000 581 364 13 16 chr1 185507418 185507728 -11687704 + L2 LINE L2 2247 2555 -864 1 2000 221 265 73 0 chr1 185510954 185511022 -11684410 - ID4_ SINE ID -9 74 2 1 2000 234 274 0 16 chr1 185511305 185511368 -11684064 + GA-rich Low_complexity Low_complexity 30 91 0 1 2000 455 301 33 56 chr1 185512385 185512600 -11682832 + B4A SINE B4 2 211 -81 1 2000 3191 22 0 0 chr1 185512631 185512988 -11682444 + IAPEY2_LTR LTR ERVK 1 357 0 1 2000 832 315 91 3 chr1 185513170 185513555 -11681877 - MER68 LTR ERVL -67 496 78 2 2000 360 0 0 0 chr1 185513593 185513633 -11681799 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2 2000 526 301 0 64 chr1 185513636 185513792 -11681640 - B3A SINE B2 -24 174 29 2 2000 1949 131 0 72 chr1 185513791 185514154 -11681278 - MTC LTR MaLR -17 404 68 2 2000 7048 70 40 21 chr1 185514162 185515604 -11679828 - L1_Mus1 LINE L1 -1 6566 5102 2 2000 7253 60 0 2 chr1 185515601 185516512 -11678920 + L1_Mus1 LINE L1 4192 5100 -783 2 2000 517 135 14 61 chr1 185516512 185516639 -11678793 - MTC LTR MaLR -295 124 1 2 2000 261 331 51 51 chr1 185516994 185517150 -11678282 + B4 SINE B4 67 222 -70 2 2000 342 0 0 0 chr1 185517364 185517402 -11678030 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 2000 2041 177 148 48 chr1 185518159 185518640 -11676792 - RLTR24 LTR ERV1 0 529 1 2 2000 433 218 24 41 chr1 185518906 185519039 -11676393 + MLT1A1 LTR MaLR 236 407 -1 2 2000 180 111 0 0 chr1 185519178 185519205 -11676227 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 2000 423 0 0 0 chr1 185519530 185519577 -11675855 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 2000 404 178 0 0 chr1 185520448 185520521 -11674911 - B2_Mm2 SINE B2 -122 73 1 3 2000 448 287 141 33 chr1 185520677 185521066 -11674366 + HAL1 LINE L1 1112 1542 -965 3 2000 444 200 0 0 chr1 185521229 185521394 -11674038 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 2000 491 164 17 17 chr1 185521395 185521630 -11673802 + (CAGAGA)n Simple_repeat Simple_repeat 1 235 0 3 2000 417 180 0 0 chr1 185521642 185521770 -11673662 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 2000 1439 139 0 22 chr1 185522168 185522396 -11673036 - URR1B DNA MER1_type -2 223 1 3 2000 435 370 14 0 chr1 185522673 185522889 -11672543 + MLT1A1 LTR MaLR 182 400 -8 3 2000 399 21 0 0 chr1 185522902 185522950 -11672482 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 2000 504 238 112 45 chr1 185523188 185523373 -11672059 - B3 SINE B2 -6 189 1 4 2000 720 235 57 29 chr1 185523563 185523773 -11671659 + B3 SINE B2 1 216 0 4 2000 324 0 0 0 chr1 185523897 185523933 -11671499 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 2000 456 337 31 0 chr1 185524268 185524461 -11670971 + MTEb LTR MaLR 86 284 -95 4 2000 302 263 113 9 chr1 185525220 185525335 -11670097 - L1MEc LINE L1 -4873 1527 1401 4 2000 721 290 103 72 chr1 185525338 185525854 -11669578 - MT2A LTR ERVL 0 533 2 4 2000 1099 256 176 29 chr1 185525922 185526507 -11668925 + Lx8 LINE L1 6803 7473 0 4 2000 275 289 20 2 chr1 185526535 185526630 -11668802 - PB1D10 SINE Alu -20 100 2 4 2000 414 263 94 51 chr1 185526818 185527053 -11668379 - ORR1E LTR MaLR -101 269 27 4 2000 739 197 80 0 chr1 185527053 185527190 -11668242 + B1_Mur2 SINE Alu 1 148 -1 4 2000 615 127 0 0 chr1 185527226 185527344 -11668088 + (CAAG)n Simple_repeat Simple_repeat 1 118 0 5 2000 468 258 55 0 chr1 185527880 185528008 -11667424 - B1F SINE Alu -11 138 4 5 2000 230 309 12 0 chr1 185528331 185528412 -11667020 - L1MEc LINE L1 -6193 207 126 4 2000 944 254 91 35 chr1 185528576 185528915 -11666517 - Lx8 LINE L1 0 7473 7116 5 2000 211 205 0 0 chr1 185528915 185528954 -11666478 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 2000 279 0 0 0 chr1 185530552 185530583 -11664849 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 2000 225 0 0 0 chr1 185530583 185530607 -11664825 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 2000 2139 169 35 11 chr1 185531797 185532173 -11663259 + Lx4B LINE L1 6436 6820 -238 5 2000 2046 160 8 17 chr1 185532167 185532529 -11662903 - Lx4B LINE L1 -613 6445 6087 5 2000 680 150 0 0 chr1 185532523 185532623 -11662809 + L1_Mur1 LINE L1 5453 5552 -334 5 2000 785 212 14 144 chr1 185532737 185532952 -11662480 - B3 SINE B2 -28 188 2 5 2000 213 313 49 29 chr1 185533319 185533421 -11662011 - MIRb SINE MIR -10 258 155 6 2000 528 283 72 6 chr1 185533500 185533667 -11661765 - B3A SINE B2 -16 182 5 6 2000 271 282 34 60 chr1 185534261 185534378 -11661054 - LTR81A LTR ERV1? -174 1176 1063 6 2000 249 343 49 44 chr1 185534280 185534463 -11660969 - MamGypLTR2 LTR Gypsy -210 979 796 6 2000 642 224 24 0 chr1 185534966 185535091 -11660341 + ID_B1 SINE B4 83 210 -14 6 2000 258 234 141 0 chr1 185536469 185536533 -11658899 - ID4_ SINE ID -10 73 1 6 2000 438 258 47 24 chr1 185536636 185536763 -11658669 - B1F SINE Alu 0 149 20 6 2000 1081 245 35 3 chr1 185536779 185537062 -11658370 + L1M2 LINE L1 3985 4276 -1867 6 2000 935 259 19 5 chr1 185537560 185537773 -11657659 - B3 SINE B2 0 216 1 6 2000 279 290 32 0 chr1 185537774 185537867 -11657565 + L1MA7 LINE L1 6176 6271 -20 6 2000 829 182 36 86 chr1 185538620 185538842 -11656590 + ORR1D1 LTR MaLR 1 211 -163 7 2000 747 292 24 5 chr1 185540275 185540485 -11654947 - ID_B1 SINE B4 -9 215 2 7 2000 368 300 29 20 chr1 185540549 185540651 -11654781 + PB1D10 SINE Alu 12 114 -3 7 2000 241 122 74 37 chr1 185540653 185540815 -11654617 + (TTATA)n Simple_repeat Simple_repeat 2 169 0 7 2000 231 229 53 15 chr1 185540848 185540981 -11654451 + (TA)n Simple_repeat Simple_repeat 2 139 0 7 2000 268 286 215 11 chr1 185541012 185541189 -11654243 - L1MA5 LINE L1 -74 6226 6014 7 2000 379 176 0 21 chr1 185541252 185541345 -11654087 + CT-rich Low_complexity Low_complexity 3 93 0 7 2000 222 172 172 0 chr1 185541359 185541417 -11654015 - ID4_ SINE ID -13 70 3 7 2000 208 147 0 0 chr1 185541801 185541835 -11653597 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 2000 267 288 27 0 chr1 185541936 185542009 -11653423 + ID_B1 SINE B4 96 170 -54 7 2000 462 190 44 0 chr1 185542614 185542751 -11652681 + GA-rich Low_complexity Low_complexity 2 144 0 8 2000 437 0 19 0 chr1 185542816 185542869 -11652563 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 8 2000 441 351 57 78 chr1 185543555 185543836 -11651596 - B4 SINE B4 -13 279 5 8 2000 304 254 192 17 chr1 185543861 185543981 -11651451 - MER5A DNA MER1_type -48 141 1 8 2000 226 322 0 0 chr1 185544221 185544301 -11651131 + MIR SINE MIR 91 177 -91 8 2000 1078 208 68 105 chr1 185544965 185545347 -11650085 + MTE2a LTR MaLR 10 377 -2 8 2000 747 249 136 60 chr1 185545408 185545661 -11649771 + ORR1D2 LTR MaLR 1 287 -83 8 2000 1221 148 14 0 chr1 185545662 185545871 -11649561 + URR1B DNA MER1_type 2 213 -12 8 2000 409 172 33 44 chr1 185545882 185545973 -11649459 + ORR1D2 LTR MaLR 281 370 0 8 2000 974 54 8 0 chr1 185546812 185546941 -11648491 + (TCCC)n Simple_repeat Simple_repeat 2 131 0 8 2000 300 292 0 0 chr1 185546949 185547014 -11648418 - ID4_ SINE ID -18 65 1 8 2000 205 190 0 23 chr1 185547752 185547795 -11647637 + CT-rich Low_complexity Low_complexity 2 43 0 9 2000 512 301 103 5 chr1 185547798 185548002 -11647430 - ID_B1 SINE B4 0 224 1 9 2000 232 236 0 18 chr1 185549072 185549128 -11646304 + CT-rich Low_complexity Low_complexity 1 55 0 9 2000 460 340 60 40 chr1 185549445 185549693 -11645739 - MT2A LTR ERVL 0 533 281 9 2000 887 51 8 0 chr1 185549695 185549812 -11645620 + (GGAGAA)n Simple_repeat Simple_repeat 6 123 0 9 2000 248 402 8 0 chr1 185549923 185550040 -11645392 - MTEa LTR MaLR -259 120 3 9 2000 932 236 232 15 chr1 185550417 185550744 -11644688 + MTD LTR MaLR 1 398 -21 9 2000 723 273 61 128 chr1 185550754 185551286 -11644146 - RLTR18B LTR ERVK -22 490 1 9 2000 208 238 42 86 chr1 185552292 185552395 -11643037 - L2a LINE L2 -3 3423 3265 9 2000 1436 103 99 0 chr1 185553389 185553622 -11641810 - ORR1A2 LTR MaLR -71 256 1 9 2000 34906 74 4 4 chr1 185554777 185560175 -11635257 - L1Md_F2 LINE L1 -12 6570 1168 1 2000 1788 166 75 20 chr1 185560158 185560474 -11634958 - L1Md_F2 LINE L1 -5838 778 443 1 2000 2937 63 29 34 chr1 185560474 185560887 -11634545 + RLTR10A LTR ERVK 1 411 0 1 2000 1788 166 75 20 chr1 185560887 185560915 -11634517 - L1Md_F2 LINE L1 -6174 442 415 1 2000 290 313 0 12 chr1 185562284 185562368 -11633064 - RSINE1 SINE B4 -77 88 6 1 2000 769 251 34 6 chr1 185563741 185563917 -11631515 + B3 SINE B2 29 209 -7 1 2000 662 104 28 0 chr1 185564353 185564459 -11630973 + B2_Mm1t SINE B2 71 179 -14 1 2000 244 109 0 35 chr1 185564535 185564592 -11630840 + B2_Mm2 SINE B2 137 191 -4 1 2000 25 31 0 0 chr1 185564654 185564686 -11630746 + AT_rich Low_complexity Low_complexity 1 32 0 1 2000 230 279 12 30 chr1 185564737 185564903 -11630529 + (TAAA)n Simple_repeat Simple_repeat 4 166 0 1 2000 3403 33 5 0 chr1 185565169 185565563 -11629869 + MTA_Mm LTR MaLR 1 396 0 1 2000 415 335 37 11 chr1 185565664 185565854 -11629578 - L1MA7 LINE L1 -209 6082 5888 1 2000 663 316 96 28 chr1 185565995 185566142 -11629290 + B4 SINE B4 56 209 -83 1 2000 252 86 0 0 chr1 185566142 185566177 -11629255 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 1 2000 663 316 96 28 chr1 185566177 185566247 -11629185 + B4 SINE B4 210 287 -5 1 2000 369 0 0 0 chr1 185566279 185566320 -11629112 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 2000 522 46 0 0 chr1 185567191 185567256 -11628176 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 2000 288 0 0 0 chr1 185567256 185567287 -11628145 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 2000 875 289 6 87 chr1 185567306 185567617 -11627815 - B4 SINE B4 -2 290 5 1 2000 501 230 0 0 chr1 185568631 185568757 -11626675 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 2000 1463 244 93 27 chr1 185569055 185569464 -11625968 + Lx7 LINE L1 6883 7318 -378 1 2000 476 287 43 60 chr1 185569663 185569848 -11625584 + MTEa LTR MaLR 1 182 -197 1 2000 904 155 17 0 chr1 185569875 185570049 -11625383 + CT-rich Low_complexity Low_complexity 2 178 0 1 2000 1158 198 0 5 chr1 185570414 185570617 -11624815 + B3 SINE B2 1 202 -14 1 2000 314 267 92 25 chr1 185571045 185571164 -11624268 - L1M3 LINE L1 -472 5708 5582 1 2000 603 283 82 52 chr1 185571348 185571783 -11623649 + L1MA6 LINE L1 5741 6183 -117 1 2000 188 226 30 75 chr1 185574354 185574421 -11621011 - L2b LINE L2 -3 3372 3309 1 2000 192 77 0 0 chr1 185574487 185574513 -11620919 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 1 2000 733 68 22 29 chr1 185574566 185574702 -11620730 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 1 2000 523 321 19 19 chr1 185575379 185575538 -11619894 - ID_B1 SINE B4 -42 182 24 1 2000 215 298 105 0 chr1 185575959 185576073 -11619359 - L2 LINE L2 -1834 1585 1460 1 2000 184 338 108 36 chr1 185576854 185577020 -11618412 - L2 LINE L2 -2786 633 456 1 2000 991 196 182 36 chr1 185577264 185577544 -11617888 - ORR1E LTR MaLR -6 353 33 1 2000 227 275 43 0 chr1 185578542 185578611 -11616821 + MIRc SINE MIR 195 266 -2 1 2000 198 245 0 0 chr1 185578906 185578955 -11616477 + MIRc SINE MIR 98 146 -122 1 2000 1698 193 56 30 chr1 185581155 185581528 -11613904 + ORR1C2 LTR MaLR 2 384 0 1 2000 376 353 6 6 chr1 185582101 185582275 -11613157 + (CCCTG)n Simple_repeat Simple_repeat 1 174 0 1 2000 1538 235 55 14 chr1 185582747 185583109 -11612323 - MTE2a LTR MaLR 0 379 3 1 2000 430 222 0 37 chr1 185583482 185583669 -11611763 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 2000 410 318 74 22 chr1 185584757 185584892 -11610540 - MER63B DNA AcHobo -4 432 291 1 2000 351 0 0 0 chr1 185585011 185585050 -11610382 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 2000 657 255 169 65 chr1 185585671 185585931 -11609501 + B4A SINE B4 6 292 0 1 2000 255 233 17 0 chr1 185585932 185585992 -11609440 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 2000 1246 41 0 0 chr1 185585998 185586144 -11609288 - B1_Mus1 SINE Alu -1 147 2 1 2000 790 262 22 45 chr1 185586643 185586867 -11608565 + ID_B1 SINE B4 6 224 0 1 2000 557 160 21 7 chr1 185587702 185587847 -11607585 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 1 2000 754 284 14 14 chr1 185589112 185589319 -11606113 - B3 SINE B2 -9 207 1 1 2000 451 286 36 26 chr1 185589693 185589887 -11605545 - Tigger13a DNA MER2_type -140 631 436 1 2000 549 267 95 7 chr1 185589923 185590070 -11605362 + B3A SINE B2 1 160 -38 1 2000 270 0 0 0 chr1 185590073 185590103 -11605329 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 2000 662 135 7 0 chr1 185590103 185590244 -11605188 + (GA)n Simple_repeat Simple_repeat 1 142 0 1 2000 2628 256 35 23 chr1 185590308 185591339 -11604093 - Lx7 LINE L1 -1506 6190 5142 1 2000 286 200 57 0 chr1 185591350 185591420 -11604012 - Lx7 LINE L1 -812 5068 4995 1 2000 211 241 56 0 chr1 185591610 185591664 -11603768 + B1F1 SINE Alu 1 57 -92 1 2000 217 196 19 58 chr1 185591679 185591782 -11603650 + A-rich Low_complexity Low_complexity 2 100 0 1 2000 214 205 0 0 chr1 185591865 185591904 -11603528 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 2000 330 267 9 73 chr1 185591978 185592087 -11603345 - PB1 SINE Alu -3 124 23 1 2000 628 218 28 0 chr1 185592267 185592409 -11603023 - RSINE1 SINE B4 -17 148 3 1 2000 270 0 0 0 chr1 185592509 185592539 -11602893 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 1 2000 460 285 117 66 chr1 185593254 185593528 -11601904 + B4A SINE B4 2 289 -3 1 2000 241 262 79 59 chr1 185593572 185593775 -11601657 - L1MC5 LINE L1 -277 7684 7478 1 2000 536 42 14 0 chr1 185594249 185594320 -11601112 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 2000 806 164 30 55 chr1 185595192 185595392 -11600040 - B3A SINE B2 -2 196 2 1 2000 6349 62 11 2 chr1 185595433 185596255 -11599177 - L1_Mus3 LINE L1 -2 6636 5808 1 2000 246 305 158 58 chr1 185597265 185597665 -11597767 + L1MC5 LINE L1 6933 7372 -589 1 31 436 247 82 67 chr1 185597791 185597986 -11597446 - MER31B LTR ERV1 -123 343 146 1 2001 227 297 0 26 chr1 185597988 185598064 -11597368 - MLT1A1 LTR MaLR -12 396 323 1 2001 459 0 0 0 chr1 185598426 185598477 -11596955 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 2001 336 282 84 39 chr1 185598505 185598660 -11596772 - RSINE1 SINE B4 0 165 4 1 2001 325 264 96 68 chr1 185598846 185599066 -11596366 + MLT1C LTR MaLR 82 307 -160 1 2001 430 71 43 0 chr1 185599832 185599902 -11595530 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 1 2001 1245 217 82 14 chr1 185599950 185600114 -11595318 - Lx6 LINE L1 -12 7448 7280 1 2001 333 0 0 0 chr1 185600114 185600151 -11595281 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 1 2001 1245 217 82 14 chr1 185600151 185600280 -11595152 - Lx6 LINE L1 -181 7279 7135 1 2001 725 176 0 8 chr1 185600281 185600407 -11595025 + B1_Mm SINE Alu 1 125 -22 1 2001 243 0 0 0 chr1 185600407 185600434 -11594998 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 2001 1095 214 87 2 chr1 185600434 185600667 -11594765 - Lx6 LINE L1 -314 7146 6907 1 2001 1140 80 0 0 chr1 185601539 185601753 -11593679 + (CA)n Simple_repeat Simple_repeat 1 214 0 1 2001 435 125 0 0 chr1 185602038 185602110 -11593322 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 2001 333 82 0 0 chr1 185602110 185602158 -11593274 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 2001 1343 294 119 9 chr1 185602963 185603536 -11591896 - MER82 DNA MER2_type 0 653 18 1 2001 316 250 9 71 chr1 185603580 185603692 -11591740 - MIRb SINE MIR -50 218 114 1 2001 469 289 44 7 chr1 185604434 185604570 -11590862 + ID_B1 SINE B4 84 224 0 1 2001 24 85 0 0 chr1 185604575 185604634 -11590798 + AT_rich Low_complexity Low_complexity 1 59 0 1 2001 416 306 75 0 chr1 185605646 185605806 -11589626 + ID_B1 SINE B4 52 223 -1 1 2001 210 250 0 0 chr1 185605850 185605898 -11589534 + (CATG)n Simple_repeat Simple_repeat 3 50 0 1 2001 237 292 0 14 chr1 185606127 185606200 -11589232 + MIRc SINE MIR 161 232 -36 1 2001 390 21 0 0 chr1 185606254 185606301 -11589131 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 2001 360 64 0 0 chr1 185606446 185606493 -11588939 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1 2001 623 307 28 0 chr1 185606819 185606995 -11588437 - ID_B1 SINE B4 -43 181 1 1 2001 729 192 0 0 chr1 185607133 185607258 -11588174 - B3 SINE B2 -86 130 6 1 2001 252 324 0 0 chr1 185610095 185610231 -11585201 + (CATATA)n Simple_repeat Simple_repeat 5 140 0 1 2001 389 326 7 22 chr1 185610393 185610528 -11584904 + ID_B1 SINE B4 83 215 -9 1 2001 275 331 73 34 chr1 185611342 185611520 -11583912 - MARNA DNA Mariner -84 502 318 1 2001 261 0 0 0 chr1 185611895 185611924 -11583508 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 2001 323 340 93 20 chr1 185612738 185612888 -11582544 + MER63A DNA AcHobo 1 161 -49 1 2001 279 0 0 0 chr1 185613161 185613192 -11582240 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 2001 441 0 0 0 chr1 185613193 185613242 -11582190 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 2001 237 277 103 56 chr1 185613365 185613472 -11581960 + MIR SINE MIR 25 136 -126 1 2001 303 140 0 0 chr1 185615038 185615088 -11580344 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 2001 881 272 116 0 chr1 185615239 185615574 -11579858 - RCHARR1 DNA MER1_type -563 411 38 1 2001 1593 266 90 19 chr1 185615605 185616073 -11579359 + Lx8 LINE L1 6920 7420 -53 1 2001 387 292 0 0 chr1 185617045 185617285 -11578147 + (TG)n Simple_repeat Simple_repeat 1 240 0 1 2001 1114 232 50 42 chr1 185617299 185617582 -11577850 - B4 SINE B4 0 292 8 1 2001 339 348 25 6 chr1 185618796 185618958 -11576474 + L1MA6 LINE L1 5740 5904 -396 1 2001 684 245 194 67 chr1 185618992 185619368 -11576064 - RLTR18B LTR ERVK -1 511 88 1 2001 702 276 93 22 chr1 185619408 185619678 -11575754 + L1MA6 LINE L1 5965 6253 -47 1 2001 22 35 0 0 chr1 185619875 185619904 -11575528 + AT_rich Low_complexity Low_complexity 1 29 0 1 2001 229 275 87 0 chr1 185620339 185620408 -11575024 + MTEb LTR MaLR 303 377 -2 2 2001 1531 192 36 77 chr1 185621089 185621479 -11573953 - ORR1D1 LTR MaLR 0 374 1 2 2001 979 304 93 48 chr1 185621656 185622181 -11573251 - Lx8 LINE L1 -8 7465 6917 2 2001 183 42 0 0 chr1 185622205 185622229 -11573203 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 2001 251 255 0 0 chr1 185622244 185622295 -11573137 - RSINE1 SINE B4 -7 158 108 2 2001 340 333 0 0 chr1 185622350 185622452 -11572980 - RSINE1 SINE B4 -61 104 3 2 2001 24 0 0 0 chr1 185622552 185622576 -11572856 + AT_rich Low_complexity Low_complexity 1 24 0 2 2001 431 128 56 14 chr1 185623224 185623367 -11572065 + (TG)n Simple_repeat Simple_repeat 2 150 0 2 2001 313 152 64 14 chr1 185623404 185623544 -11571888 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 2001 2403 99 9 0 chr1 185623564 185623888 -11571544 - ORR1A2 LTR MaLR 0 327 1 2 2001 589 313 31 0 chr1 185624203 185624366 -11571066 + B3A SINE B2 4 171 -27 2 2001 260 211 9 46 chr1 185624385 185624494 -11570938 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 2 2001 387 156 62 12 chr1 185624508 185624670 -11570762 + (TATATG)n Simple_repeat Simple_repeat 2 171 0 2 2001 387 151 40 14 chr1 185624837 185624911 -11570521 + MTC LTR MaLR 335 410 -11 2 2001 535 229 16 0 chr1 185625415 185625537 -11569895 + MTE2b LTR MaLR 86 209 -170 2 2001 1232 234 30 113 chr1 185625905 185626031 -11569401 + MTE2b LTR MaLR 1 95 -284 2 2001 1257 95 15 40 chr1 185626031 185626229 -11569203 - B2_Mm1t SINE B2 0 193 1 2 2001 1232 234 30 113 chr1 185626229 185626501 -11568931 + MTE2b LTR MaLR 96 366 -13 2 2001 1273 134 8 108 chr1 185626552 185626802 -11568630 + URR1B DNA MER1_type 1 225 0 2 2001 744 189 0 0 chr1 185627518 185627661 -11567771 + URR1B DNA MER1_type 83 225 0 2 2001 1653 174 106 3 chr1 185629783 185630094 -11565338 - Lx5 LINE L1 0 7050 6708 2 2001 241 181 40 53 chr1 185633209 185633285 -11562147 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 2 2001 1842 130 111 14 chr1 185633285 185633636 -11561796 + RMER12 LTR ERVK 1 385 -937 2 2001 34222 79 4 33 chr1 185633639 185638849 -11556583 + L1Md_A LINE L1 408 5586 -297 2 2001 8269 42 1 4 chr1 185638849 185639844 -11555588 + L1Md_F2 LINE L1 5587 6578 -4 2 2001 34222 61 1 34 chr1 185639844 185640100 -11555332 + L1Md_A LINE L1 5587 5712 -171 2 2001 1009 50 7 0 chr1 185640100 185640240 -11555192 + L1Md_F2 LINE L1 6442 6582 0 2 2001 1129 88 0 0 chr1 185640244 185640391 -11555041 + B1_Mm SINE Alu 1 147 0 2 2001 207 0 0 0 chr1 185640391 185640414 -11555018 + (A)n Simple_repeat Simple_repeat 1 23 0 2 2001 2408 119 10 0 chr1 185640414 185640810 -11554622 + RMER12 LTR ERVK 372 771 -551 2 2001 357 117 0 0 chr1 185640811 185640871 -11554561 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 2001 519 66 0 0 chr1 185640885 185640961 -11554471 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 2001 2193 251 58 72 chr1 185641080 185642038 -11553394 + RMER17B LTR ERVK 1 914 -44 2 2001 346 208 20 14 chr1 185642134 185642280 -11553152 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 2001 687 124 0 0 chr1 185642660 185642773 -11552659 + (TC)n Simple_repeat Simple_repeat 2 114 0 2 2001 291 330 90 77 chr1 185642869 185643095 -11552337 + L2 LINE L2 2354 2588 -831 2 2001 356 0 0 22 chr1 185643095 185643140 -11552292 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2 2001 1104 66 0 0 chr1 185643140 185643276 -11552156 - B1_Mus1 SINE Alu -12 136 1 2 2001 291 330 90 77 chr1 185643276 185643347 -11552085 + L2 LINE L2 2589 2655 -764 2 2001 382 249 74 69 chr1 185643762 185643965 -11551467 - L1MC LINE L1 -848 5496 5293 2 2001 309 135 0 0 chr1 185643974 185644026 -11551406 + (TATG)n Simple_repeat Simple_repeat 1 52 0 2 2001 675 303 41 4 chr1 185644071 185644313 -11551119 - B4A SINE B4 -41 251 1 2 2001 459 0 0 0 chr1 185644921 185644972 -11550460 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 2001 581 241 42 7 chr1 185646372 185646514 -11548918 + B1_Mur1 SINE Alu 3 149 0 2 2001 459 148 0 0 chr1 185646747 185646835 -11548597 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 2001 547 321 19 6 chr1 185647229 185647386 -11548046 - RSINE1 SINE B4 -2 163 5 2 2001 858 91 0 0 chr1 185647506 185647627 -11547805 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 2 2001 2224 158 63 35 chr1 185647629 185648089 -11547343 - Lx4B LINE L1 -22 7036 6564 2 2001 1176 67 0 0 chr1 185648060 185648225 -11547207 - L1_Mm LINE L1 -4321 1562 1398 2 2001 4337 70 7 3 chr1 185648225 185648794 -11546638 + L1_Mus1 LINE L1 5997 6567 0 2 2001 5997 133 45 8 chr1 185648796 185649744 -11545688 - Lx4B LINE L1 -451 6607 5625 2 2001 1808 140 131 0 chr1 185649744 185649798 -11545634 + L1_Mur2 LINE L1 5183 5236 -641 2 2001 567 0 0 0 chr1 185649798 185649861 -11545571 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 2001 1808 140 131 0 chr1 185649861 185650120 -11545312 + L1_Mur2 LINE L1 5237 5536 -341 2 2001 252 0 0 0 chr1 185650859 185650887 -11544545 + (T)n Simple_repeat Simple_repeat 1 28 0 2 2001 241 216 0 0 chr1 185651373 185651424 -11544008 + L1ME3B LINE L1 5384 5434 -806 2 2001 318 318 163 43 chr1 185651443 185651903 -11543529 + L1ME3B LINE L1 5403 5909 -331 2 2001 369 0 0 0 chr1 185651903 185651944 -11543488 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 2001 318 318 163 43 chr1 185651944 185652090 -11543342 + L1ME3B LINE L1 5910 6081 -159 2 2001 390 42 0 0 chr1 185652128 185652176 -11543256 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 2001 1115 266 21 42 chr1 185652335 185652622 -11542810 + B4 SINE B4 8 288 -4 2 2001 196 28 0 77 chr1 185653029 185653068 -11542364 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2 2001 6107 144 88 3 chr1 185653132 185654184 -11541248 - L1_Mur2 LINE L1 -101 5776 4635 2 2001 2889 15 61 0 chr1 185654184 185654510 -11540922 - ORR1A0 LTR MaLR 0 346 1 2 2001 8464 69 0 2 chr1 185654511 185655718 -11539714 - ORR1A0-int LTR MaLR -1 1791 587 2 2001 308 24 0 0 chr1 185655711 185655753 -11539679 - ORR1A0 LTR MaLR -304 42 1 2 2001 6471 114 89 8 chr1 185655753 185656862 -11538570 - L1_Mur2 LINE L1 -1238 4639 3441 2 2001 6629 142 26 23 chr1 185656871 185658441 -11536991 - L1_Mur2 LINE L1 -3518 2359 784 2 2001 285 29 0 0 chr1 185658589 185658623 -11536809 + (T)n Simple_repeat Simple_repeat 1 34 0 2 2001 28 0 0 0 chr1 185660660 185660688 -11534744 + AT_rich Low_complexity Low_complexity 1 28 0 2 2001 248 294 0 56 chr1 185660786 185660858 -11534574 - ID4_ SINE ID -14 69 2 2 2001 463 331 99 37 chr1 185660940 185661213 -11534219 + B4A SINE B4 1 290 -2 2 2001 1348 295 50 146 chr1 185661965 185662680 -11532752 + Lx8 LINE L1 6481 7127 -346 2 2001 444 51 0 0 chr1 185662801 185662860 -11532572 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 2001 1049 186 10 0 chr1 185662915 185663119 -11532313 - URR1A DNA MER1_type -2 224 19 2 2001 432 0 0 0 chr1 185664107 185664155 -11531277 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 2001 317 292 9 78 chr1 185664452 185664567 -11530865 + MTEa LTR MaLR 1 107 -272 2 2001 1007 257 134 0 chr1 185665999 185666453 -11528979 - MT2A LTR ERVL -18 515 1 2 2001 978 258 77 60 chr1 185666453 185666896 -11528536 - MERVL_2A-int LTR ERVL 0 5761 5213 2 2001 244 224 20 0 chr1 185666896 185666945 -11528487 + CT-rich Low_complexity Low_complexity 2 51 0 2 2001 186 239 0 0 chr1 185666945 185667016 -11528416 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 2001 373 288 60 8 chr1 185667021 185667154 -11528278 - RSINE1 SINE B4 -6 159 20 2 2001 325 309 93 67 chr1 185667956 185668181 -11527251 + MamRep605 Unknown Unknown 582 812 -64 2 2001 357 336 15 22 chr1 185669943 185670080 -11525352 - MLT1H LTR MaLR -370 179 44 2 2001 308 269 171 9 chr1 185670091 185670196 -11525236 - B1F SINE Alu -26 123 2 2 2001 447 68 0 0 chr1 185670243 185670302 -11525130 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 2001 1222 240 36 37 chr1 185670957 185671260 -11524172 + B4 SINE B4 9 288 -4 2 2001 273 387 8 40 chr1 185671460 185671584 -11523848 + MER117 DNA MER1_type 78 197 0 2 2001 327 300 30 10 chr1 185672693 185672794 -11522638 + PB1D10 SINE Alu 7 109 -8 2 2001 859 230 58 45 chr1 185673013 185673350 -11522082 + L1MB1 LINE L1 5226 5584 -584 2 2001 338 324 160 28 chr1 185673351 185673669 -11521763 + L1M2 LINE L1 5411 5770 -521 2 2001 716 259 81 77 chr1 185673738 185673781 -11521651 + B3 SINE B2 1 43 -173 2 2001 3783 33 0 27 chr1 185673781 185674223 -11521209 + L1Md_F2 LINE L1 6152 6581 -1 2 2001 716 259 81 77 chr1 185674223 185674388 -11521044 + B3 SINE B2 44 210 -6 2 2001 356 211 23 39 chr1 185674378 185674420 -11521012 + ORR1B1-int LTR MaLR 608 647 -862 2 2001 736 70 14 1 chr1 185674420 185674529 -11520903 + B1_Mm SINE Alu 1 117 0 2 2001 1579 233 53 13 chr1 185674689 185675063 -11520369 - MT2A LTR ERVL -144 389 1 2 2001 408 189 48 87 chr1 185675170 185675274 -11520158 + MTE2b LTR MaLR 1 100 -279 2 2001 443 294 39 28 chr1 185675274 185675456 -11519976 + L1MB1 LINE L1 5941 6124 -44 2 2001 1251 155 91 10 chr1 185676327 185676535 -11518897 + URR1B DNA MER1_type 1 225 0 2 2001 913 250 0 0 chr1 185678486 185678666 -11516766 - B3A SINE B2 -18 180 1 2 2001 325 253 20 31 chr1 185678980 185679078 -11516354 + Charlie13a DNA Charlie 1258 1354 -160 2 2001 30 27 0 0 chr1 185679672 185679709 -11515723 + AT_rich Low_complexity Low_complexity 1 37 0 2 2001 866 237 114 16 chr1 185679709 185679902 -11515530 - B3 SINE B2 -4 212 1 2 2001 475 149 0 34 chr1 185680218 185680371 -11515061 + CT-rich Low_complexity Low_complexity 1 147 0 2 2001 261 259 35 0 chr1 185680414 185680472 -11514960 - ID4_ SINE ID -21 62 3 2 2001 472 294 76 42 chr1 185680541 185680804 -11514628 + HAL1-2a_MD LINE L1 2197 2468 -556 2 2001 405 244 12 0 chr1 185681460 185681542 -11513890 + B4 SINE B4 2 84 -208 2 2001 228 67 0 0 chr1 185681577 185681607 -11513825 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 2001 320 190 17 0 chr1 185682108 185682166 -11513266 - HAL1-3A_ME LINE L1 -824 2034 1976 2 2001 32 0 0 0 chr1 185682272 185682304 -11513128 + AT_rich Low_complexity Low_complexity 1 32 0 2 2001 474 190 9 138 chr1 185682455 185682571 -11512861 + B3A SINE B2 5 105 -93 2 2001 254 229 0 20 chr1 185682573 185682622 -11512810 - ID SINE ID -176 48 1 2 2001 330 26 0 0 chr1 185682660 185682699 -11512733 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 2001 392 206 216 0 chr1 185682706 185682803 -11512629 - RSINE1 SINE B4 -45 120 3 2 2001 213 0 53 26 chr1 185682911 185682949 -11512483 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 2 2001 2185 29 0 24 chr1 185682969 185683218 -11512214 + L1Md_F2 LINE L1 6321 6563 -19 3 2001 369 0 0 0 chr1 185683220 185683261 -11512171 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 2001 557 69 0 11 chr1 185683626 185683714 -11511718 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 3 2001 387 322 56 50 chr1 185683789 185683949 -11511483 - B4A SINE B4 0 292 132 3 2001 229 155 75 37 chr1 185684133 185684240 -11511192 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 2001 294 322 56 22 chr1 185684541 185684719 -11510713 - L1M5 LINE L1 -585 5539 5356 3 2001 721 321 73 27 chr1 185685029 185685288 -11510144 + B4A SINE B4 20 290 -2 3 2001 351 343 48 53 chr1 185685387 185685803 -11509629 + L1M5 LINE L1 3830 4243 -1903 3 2001 826 258 68 163 chr1 185687382 185687762 -11507670 - MTD LTR MaLR -16 403 60 3 2001 441 0 0 0 chr1 185689912 185689961 -11505471 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 2001 181 213 0 78 chr1 185690065 185690116 -11505316 - L3 LINE CR1 -1924 2565 2519 3 2001 602 253 66 79 chr1 185690965 185691324 -11504108 + MT2A LTR ERVL 2 522 -79 3 2001 346 304 8 59 chr1 185691322 185691441 -11503991 + MER5A DNA MER1_type 18 130 -59 3 2001 295 281 12 0 chr1 185691614 185691785 -11503647 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 2001 783 333 129 46 chr1 185693575 185693835 -11501597 + L2 LINE L2 1934 2217 -1202 3 2001 6531 36 12 3 chr1 185693835 185694585 -11500847 - L1Md_F3 LINE L1 0 6584 5828 3 2001 783 333 129 46 chr1 185694585 185694648 -11500784 + L2 LINE L2 2218 2282 -1137 3 2001 3789 205 89 34 chr1 185694648 185695155 -11500277 - RMER17B LTR ERVK 0 958 417 3 2001 492 18 0 0 chr1 185695155 185695212 -11500220 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 2001 3789 205 89 34 chr1 185695212 185695612 -11499820 - RMER17B LTR ERVK -542 416 2 3 2001 783 333 129 46 chr1 185695612 185696164 -11499268 + L2 LINE L2 2283 2881 -538 3 2001 416 240 18 55 chr1 185697091 185697201 -11498231 + B3A SINE B2 48 153 -45 3 2001 818 305 84 18 chr1 185697401 185697675 -11497757 + B4A SINE B4 1 292 0 3 2001 276 275 128 25 chr1 185697849 185698012 -11497420 + L1MB3 LINE L1 5350 5527 -656 3 2001 189 0 0 0 chr1 185698012 185698033 -11497399 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 2001 249 322 143 17 chr1 185698033 185698107 -11497325 + L1MB3 LINE L1 5528 5615 -568 3 2001 1223 76 0 0 chr1 185698107 185698252 -11497180 + B1_Mus2 SINE Alu 3 147 0 3 2001 426 29 0 42 chr1 185698253 185698324 -11497108 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 3 2001 603 271 57 53 chr1 185698324 185698589 -11496843 + L1MB3 LINE L1 5592 5857 -326 3 2001 678 188 0 8 chr1 185698589 185698718 -11496714 - URR1B DNA MER1_type -6 219 92 3 2001 294 191 29 0 chr1 185698844 185698912 -11496520 - MIRm SINE MIR -140 136 67 3 2001 222 204 0 0 chr1 185699059 185699103 -11496329 + GA-rich Low_complexity Low_complexity 2 45 0 3 2001 447 125 0 0 chr1 185699478 185699550 -11495882 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 2001 273 206 63 0 chr1 185699738 185699801 -11495631 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 3 2001 272 250 51 38 chr1 185699801 185699814 -11495618 + ID4 SINE ID 7 83 0 3 2001 327 78 0 0 chr1 185699882 185699933 -11495499 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 2001 257 326 51 0 chr1 185701554 185701652 -11493780 + B3A SINE B2 82 184 -14 3 2001 222 62 0 0 chr1 185701688 185701720 -11493712 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 2001 514 74 24 47 chr1 185702283 185702368 -11493064 + B1_Mur3 SINE Alu 65 147 -2 3 2001 23 78 0 0 chr1 185703254 185703305 -11492127 + AT_rich Low_complexity Low_complexity 1 51 0 3 2001 896 260 36 79 chr1 185703568 185703873 -11491559 - B4 SINE B4 0 292 1 3 2001 1092 263 10 145 chr1 185704063 185704455 -11490977 - MTEa LTR MaLR -7 372 34 3 2001 207 282 154 0 chr1 185705513 185705591 -11489841 + L2a LINE L2 3301 3390 -36 3 2001 850 233 104 58 chr1 185705731 185706009 -11489423 + MTE2a LTR MaLR 74 364 -15 3 2001 384 328 73 42 chr1 185707298 185707419 -11488013 + RMER30 DNA MER1_type 5 137 -65 3 2001 821 213 40 6 chr1 185707419 185707594 -11487838 + B3A SINE B2 2 182 -16 3 2001 384 328 73 42 chr1 185707594 185707663 -11487769 + RMER30 DNA MER1_type 138 201 -1 3 2001 345 303 71 58 chr1 185707663 185707714 -11487718 + B4 SINE B4 41 187 -105 3 2001 410 266 43 0 chr1 185707714 185707808 -11487624 + B1F1 SINE Alu 1 98 -51 3 2001 370 286 0 0 chr1 185707811 185707888 -11487544 + BC1_Mm scRNA scRNA 2 78 -74 3 2001 1186 255 16 150 chr1 185709492 185709925 -11485507 + MTE2a LTR MaLR 5 379 0 3 2001 267 31 0 0 chr1 185710414 185710446 -11484986 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 2001 267 284 12 24 chr1 185710535 185710618 -11484814 - MTEb LTR MaLR -4 375 294 3 2001 294 95 0 0 chr1 185710715 185710757 -11484675 + (AGGGGG)n Simple_repeat Simple_repeat 3 44 0 3 2001 278 343 43 21 chr1 185711068 185711208 -11484224 - MIRb SINE MIR -32 236 94 3 2001 644 176 8 0 chr1 185712631 185712762 -11482670 + (TCCA)n Simple_repeat Simple_repeat 4 135 0 3 2001 217 356 25 11 chr1 185712795 185712907 -11482525 - L2b LINE L2 -36 3390 3237 3 2001 519 249 275 15 chr1 185713137 185713337 -11482095 + MTEb LTR MaLR 128 379 0 3 2001 300 27 0 0 chr1 185713748 185713785 -11481647 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 2001 193 266 0 21 chr1 185713985 185714081 -11481351 + GA-rich Low_complexity Low_complexity 1 94 0 3 2001 300 138 0 0 chr1 185714070 185714135 -11481297 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 3 2001 815 155 182 32 chr1 185715023 185715210 -11480222 + URR1A DNA MER1_type 11 225 -1 3 2001 296 281 30 38 chr1 185715094 185715227 -11480205 - CYRA11_Mm Unknown Y-chromosome -330 287 156 3 2001 189 121 0 0 chr1 185715393 185715426 -11480006 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 2001 369 175 191 9 chr1 185715427 185715542 -11479890 + RLTR21 LTR ERVK 1171 1306 -266 3 2001 2641 77 3 15 chr1 185716865 185717207 -11478225 - L1_Mus1 LINE L1 0 6567 6230 3 2001 236 253 55 44 chr1 185717695 185717786 -11477646 - L1M5 LINE L1 -507 5617 5526 3 2001 303 307 96 48 chr1 185718105 185718355 -11477077 - L1M5 LINE L1 -1853 4293 4032 3 2001 770 141 53 57 chr1 185720538 185720718 -11474714 + MTD LTR MaLR 238 419 -2 3 2001 285 329 88 14 chr1 185720811 185720959 -11474473 - MLT1A0 LTR MaLR -205 160 2 3 2001 830 250 99 0 chr1 185721286 185721478 -11473954 + B3 SINE B2 1 211 -5 3 2001 485 243 15 4 chr1 185721543 185721648 -11473784 - PB1D10 SINE Alu -11 136 26 3 2001 405 0 0 0 chr1 185723196 185723241 -11472191 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 2001 445 204 43 0 chr1 185723245 185723338 -11472094 - B1F SINE Alu -2 147 51 3 2001 21 0 0 0 chr1 185723585 185723606 -11471826 + AT_rich Low_complexity Low_complexity 1 21 0 3 2001 373 295 29 0 chr1 185723646 185723751 -11471681 + B1F SINE Alu 40 147 -2 3 2001 207 286 0 0 chr1 185723774 185723851 -11471581 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 2001 267 31 0 0 chr1 185723901 185723933 -11471499 + (CCA)n Simple_repeat Simple_repeat 1 32 0 3 2001 272 200 13 0 chr1 185724228 185724303 -11471129 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 2001 597 232 0 0 chr1 185724317 185724485 -11470947 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 2001 459 276 9 0 chr1 185724556 185724672 -11470760 - B4A SINE B4 -5 287 171 3 2001 398 273 164 67 chr1 185724664 185724829 -11470603 + B3A SINE B2 14 194 -4 3 2001 376 252 0 67 chr1 185724895 185725014 -11470418 + Lx7 LINE L1 7558 7668 -28 3 2001 1632 234 45 20 chr1 185725298 185725393 -11470039 - Lx6 LINE L1 -1 7459 7367 3 2001 467 33 16 0 chr1 185725393 185725454 -11469978 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 3 2001 1632 234 45 20 chr1 185725454 185725759 -11469673 - Lx6 LINE L1 -94 7366 7051 3 2001 352 307 26 93 chr1 185725868 185726062 -11469370 - Tigger5 DNA MER2_type -2197 209 29 3 2001 195 222 0 0 chr1 185726160 185726205 -11469227 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 2001 980 261 43 14 chr1 185726208 185726488 -11468944 - B4A SINE B4 -4 288 1 3 2001 289 214 205 0 chr1 185726860 185726972 -11468460 + MER3 DNA MER1_type 75 209 0 3 2001 903 218 22 118 chr1 185727040 185727064 -11468368 - B4 SINE B4 0 292 271 3 2001 240 86 0 0 chr1 185727064 185727099 -11468333 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 2001 903 218 22 118 chr1 185727099 185727396 -11468036 - B4 SINE B4 -22 270 2 3 2001 942 276 91 56 chr1 185727795 185727945 -11467487 + ORR1E LTR MaLR 6 171 -188 3 2001 279 79 0 0 chr1 185727945 185727983 -11467449 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 3 2001 942 276 91 56 chr1 185727983 185728104 -11467328 + ORR1E LTR MaLR 172 301 -58 3 2001 252 59 0 0 chr1 185728104 185728138 -11467294 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 2001 1016 82 0 0 chr1 185728140 185728275 -11467157 - B1_Mus1 SINE Alu -12 136 2 3 2001 942 276 91 56 chr1 185728275 185728341 -11467091 + ORR1E LTR MaLR 302 358 -1 3 2002 1104 75 0 14 chr1 185730607 185730755 -11464677 - B1_Mus2 SINE Alu 0 147 2 3 2002 257 349 0 0 chr1 185732076 185732162 -11463270 + L2b LINE L2 3289 3374 -1 3 2002 201 74 0 0 chr1 185732248 185732275 -11463157 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 2002 1118 57 0 21 chr1 185732861 185732998 -11462434 + B1_Mus2 SINE Alu 2 136 -11 3 2002 271 44 44 0 chr1 185732998 185733043 -11462389 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 2002 639 217 35 14 chr1 185734273 185734418 -11461014 + B3A SINE B2 3 150 -48 3 2002 5386 222 73 35 chr1 185734505 185735491 -11459941 + Lx6 LINE L1 6088 7125 -335 3 2002 576 52 20 20 chr1 185735491 185735589 -11459843 + (TTATA)n Simple_repeat Simple_repeat 1 98 0 3 2002 5386 222 73 35 chr1 185735589 185735818 -11459614 + Lx6 LINE L1 7126 7348 -112 3 2002 189 296 193 0 chr1 185736590 185736678 -11458754 + L2b LINE L2 3294 3406 -20 3 2002 297 353 37 96 chr1 185737163 185737539 -11457893 - ORR1E LTR MaLR 0 359 6 3 2002 420 211 118 9 chr1 185737560 185737670 -11457762 + RSINE1 SINE B4 4 125 -40 3 2002 184 267 12 74 chr1 185738202 185738283 -11457149 - MIRc SINE MIR -178 90 15 3 2002 601 331 101 8 chr1 185738680 185738714 -11456718 + B4 SINE B4 3 36 -256 3 2002 399 21 0 0 chr1 185738714 185738762 -11456670 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 2002 601 331 101 8 chr1 185738762 185738974 -11456458 + B4 SINE B4 37 271 -21 3 2002 342 0 0 0 chr1 185738984 185739022 -11456410 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 2002 447 19 0 0 chr1 185739022 185739073 -11456359 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 2002 216 97 0 0 chr1 185739682 185739713 -11455719 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 4 2002 540 30 0 0 chr1 185739715 185739781 -11455651 + (CCAA)n Simple_repeat Simple_repeat 1 66 0 4 2002 199 330 96 0 chr1 185739918 185740012 -11455420 + L2a LINE L2 3322 3424 -2 4 2002 325 264 45 0 chr1 185740072 185740182 -11455250 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 4 2002 189 197 40 0 chr1 185740196 185740272 -11455160 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 4 2002 345 326 96 15 chr1 185740406 185740605 -11454827 - MIR SINE MIR -30 232 18 4 2002 293 268 98 0 chr1 185742355 185742437 -11452995 - Charlie12 DNA MER1_type -2762 111 22 4 2002 328 257 34 110 chr1 185742806 185742924 -11452508 + MTEb LTR MaLR 3 111 -268 4 2002 1948 144 11 77 chr1 185742933 185743310 -11452122 + ORR1B1 LTR MaLR 41 392 -2 4 2002 515 324 84 11 chr1 185743310 185743555 -11451877 + MTEb LTR MaLR 106 369 -10 4 2002 744 302 76 35 chr1 185743696 185744066 -11451366 - MLT1D LTR MaLR -101 404 20 4 2002 658 167 0 9 chr1 185744879 185744988 -11450444 - B3 SINE B2 -100 116 9 4 2002 423 0 0 0 chr1 185746187 185746234 -11449198 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 2002 345 47 0 0 chr1 185746370 185746413 -11449019 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 2002 391 345 8 0 chr1 185746417 185746536 -11448896 - RSINE1 SINE B4 -43 122 3 4 2002 225 108 0 0 chr1 185746551 185746588 -11448844 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 4 2002 593 96 11 0 chr1 185746660 185746754 -11448678 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 4 2002 190 377 42 66 chr1 185746862 185747075 -11448357 - L3 LINE CR1 -178 4311 4104 4 2002 264 264 0 14 chr1 185747913 185747986 -11447446 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 2002 763 346 51 8 chr1 185748131 185748524 -11446908 + Lx8 LINE L1 7062 7471 -2 4 2002 975 124 11 6 chr1 185748663 185748841 -11446591 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 2002 366 284 26 161 chr1 185749453 185749646 -11445786 + MTE2a LTR MaLR 1 167 -212 4 2002 1161 136 11 0 chr1 185749838 185750014 -11445418 + B2_Mm1t SINE B2 2 179 -14 4 2002 249 115 56 37 chr1 185750061 185750115 -11445317 + B2_Mm2 SINE B2 47 101 -94 4 2002 378 0 0 0 chr1 185750133 185750175 -11445257 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 2002 287 260 26 96 chr1 185750257 185750372 -11445060 - Lx8 LINE L1 -153 7320 7214 4 2002 2997 134 48 0 chr1 185750343 185750898 -11444534 - Lx5 LINE L1 -949 6101 5517 4 2002 4704 188 25 44 chr1 185750914 185751866 -11443566 + Lx5 LINE L1 6117 7050 0 4 2002 277 240 53 0 chr1 185751862 185751937 -11443495 - Lx8 LINE L1 -233 7240 7162 4 2002 581 261 50 63 chr1 185751957 185752178 -11443254 + MTE2a LTR MaLR 160 377 -2 4 2002 26 0 0 0 chr1 185753340 185753366 -11442066 + AT_rich Low_complexity Low_complexity 1 26 0 4 2002 21 0 0 0 chr1 185755960 185755981 -11439451 + AT_rich Low_complexity Low_complexity 1 21 0 4 2002 432 0 0 0 chr1 185756596 185756644 -11438788 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 2002 3064 56 8 18 chr1 185756779 185757179 -11438253 - MTA_Mm LTR MaLR 0 396 1 4 2002 260 188 0 30 chr1 185758868 185758934 -11436498 + A-rich Low_complexity Low_complexity 2 65 0 4 2002 32 26 0 0 chr1 185759186 185759225 -11436207 + AT_rich Low_complexity Low_complexity 1 39 0 4 2002 198 0 0 0 chr1 185759442 185759464 -11435968 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 2002 216 0 0 0 chr1 185759464 185759487 -11435945 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 2002 502 170 36 54 chr1 185760439 185760551 -11434881 - MLT1A1 LTR MaLR 0 408 299 4 2002 218 240 0 26 chr1 185760573 185760650 -11434782 + G-rich Low_complexity Low_complexity 2 76 0 4 2002 613 197 28 7 chr1 185760700 185760843 -11434589 - B1F SINE Alu -1 148 3 4 2002 806 252 77 16 chr1 185761670 185761957 -11433475 + ORR1E LTR MaLR 39 355 -4 4 2002 740 116 16 0 chr1 185763279 185763400 -11432032 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 4 2002 1208 61 0 0 chr1 185763576 185763723 -11431709 + B1_Mus1 SINE Alu 2 148 0 4 2002 198 0 0 0 chr1 185763727 185763749 -11431683 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 2002 23 0 0 0 chr1 185763874 185763897 -11431535 + AT_rich Low_complexity Low_complexity 1 23 0 4 2002 414 0 0 0 chr1 185764251 185764297 -11431135 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 2002 1065 74 0 0 chr1 185764298 185764433 -11430999 - B1_Mus2 SINE Alu -12 135 1 4 2002 1021 197 14 5 chr1 185765670 185765884 -11429548 + URR1B DNA MER1_type 1 216 -9 4 2002 258 32 0 0 chr1 185767966 185767997 -11427435 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 4 2002 604 297 0 0 chr1 185769652 185769790 -11425642 + RSINE1 SINE B4 13 150 -15 4 2002 1270 243 55 19 chr1 185770372 185770737 -11424695 - MTEb LTR MaLR 0 379 2 4 2002 326 230 11 49 chr1 185771397 185771580 -11423852 + GA-rich Low_complexity Low_complexity 3 178 0 4 2002 494 143 11 0 chr1 185772036 185772127 -11423305 + (TATG)n Simple_repeat Simple_repeat 4 95 0 4 2002 405 0 0 0 chr1 185772888 185772933 -11422499 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 2002 579 274 67 18 chr1 185773968 185774191 -11421241 + Lx8 LINE L1 7240 7473 0 4 2002 402 335 5 63 chr1 185774699 185774890 -11420542 + B3A SINE B2 3 182 -16 4 2002 1491 117 31 20 chr1 185775230 185775479 -11419953 + Lx3_Mus LINE L1 6740 6991 -18 4 2002 186 43 0 0 chr1 185775479 185775502 -11419930 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 2002 460 333 66 4 chr1 185775610 185775851 -11419581 + L1ME1 LINE L1 5663 5918 -261 4 2002 539 118 0 0 chr1 185777014 185777090 -11418342 - L1_Mur3 LINE L1 -751 5129 5054 4 2002 415 281 43 12 chr1 185777535 185777697 -11417735 + (TATG)n Simple_repeat Simple_repeat 4 170 0 4 2002 210 37 0 0 chr1 185777705 185777732 -11417700 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 2002 746 265 157 0 chr1 185777751 185778000 -11417432 - B4 SINE B4 -3 289 2 4 2002 471 267 17 0 chr1 185778761 185778881 -11416551 - ID_B1 SINE B4 -102 122 1 4 2002 22 56 0 0 chr1 185778928 185778964 -11416468 + AT_rich Low_complexity Low_complexity 1 36 0 4 2002 1693 271 52 52 chr1 185779178 185779720 -11415712 - Lx7 LINE L1 -395 7301 6760 4 2002 2081 179 73 34 chr1 185779723 185780227 -11415205 - RLTR11A LTR ERVK -4 524 1 4 2002 23 0 0 0 chr1 185780261 185780284 -11415148 + AT_rich Low_complexity Low_complexity 1 23 0 4 2002 255 31 0 0 chr1 185781615 185781647 -11413785 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 2002 785 284 10 57 chr1 185781966 185781994 -11413438 - B4 SINE B4 0 292 272 4 2002 510 46 0 0 chr1 185781994 185782059 -11413373 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 2002 785 284 10 57 chr1 185782059 185782239 -11413193 - B4 SINE B4 -21 271 94 4 2002 210 194 42 0 chr1 185782287 185782359 -11413073 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 4 2002 450 0 0 0 chr1 185784042 185784092 -11411340 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 4 2002 282 262 71 58 chr1 185784706 185784967 -11410465 + L1MA7 LINE L1 5952 6211 -80 4 2002 643 292 6 11 chr1 185785000 185785180 -11410252 - B3A SINE B2 -18 180 2 4 2002 720 181 0 0 chr1 185786218 185786384 -11409048 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 2002 399 21 0 0 chr1 185788411 185788459 -11406973 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 2002 272 217 40 140 chr1 185788539 185788689 -11406743 + MT2B LTR ERVL 105 239 -362 4 2002 280 163 140 60 chr1 185788624 185788729 -11406703 + B1_Mus2 SINE Alu 11 119 -1 4 2002 588 14 0 0 chr1 185788730 185788799 -11406633 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 2002 471 344 114 18 chr1 185789171 185789399 -11406033 - B4 SINE B4 -2 290 41 4 2002 245 331 62 34 chr1 185789523 185789701 -11405731 + MER5A DNA MER1_type 6 188 -1 4 2002 231 36 0 0 chr1 185790006 185790034 -11405398 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 2002 1144 248 102 3 chr1 185790661 185790993 -11404439 - ORR1D2 LTR MaLR -2 368 4 4 2002 288 0 0 0 chr1 185791106 185791138 -11404294 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 2002 320 295 107 7 chr1 185791198 185791338 -11404094 - RSINE1 SINE B4 -9 156 3 4 2002 737 122 8 24 chr1 185791582 185791708 -11403724 + ORR1E LTR MaLR 2 125 -234 4 2002 915 127 0 12 chr1 185791683 185791843 -11403589 - RLTR9B LTR ERVK -279 158 1 4 2002 180 0 0 0 chr1 185791845 185791865 -11403567 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 2002 660 303 0 13 chr1 185791875 185792032 -11403400 - RSINE1 SINE B4 -7 158 4 4 2002 378 289 0 8 chr1 185792047 185792176 -11403256 - L1MA7 LINE L1 -6 6285 6158 4 2002 747 328 34 31 chr1 185792690 185793018 -11402414 - L1MA7 LINE L1 -582 5718 5395 4 2002 537 44 0 0 chr1 185793018 185793086 -11402346 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 2002 747 328 34 31 chr1 185793086 185793172 -11402260 - L1MA7 LINE L1 -906 5394 5303 4 2002 677 311 14 28 chr1 185794220 185794438 -11400994 - ID_B1 SINE B4 -6 218 4 4 2002 391 282 36 78 chr1 185794830 185794942 -11400490 + L1M2 LINE L1 4825 4928 -1215 4 2002 3587 8 5 0 chr1 185794942 185795336 -11400096 - MTA_Mm LTR MaLR 0 396 1 4 2002 391 282 36 78 chr1 185795336 185795415 -11400017 + L1M2 LINE L1 4929 5008 -1135 4 2002 975 331 21 64 chr1 185795465 185795702 -11399730 + MTE-int LTR MaLR 229 470 -1110 4 2002 3080 196 35 13 chr1 185795702 185796301 -11399131 - RLTR18 LTR ERVK -4 612 1 4 2002 975 331 21 64 chr1 185796301 185796407 -11399025 + MTE-int LTR MaLR 471 566 -1014 4 2002 333 0 0 0 chr1 185796407 185796444 -11398988 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 2002 975 331 21 64 chr1 185796444 185796583 -11398849 + MTE-int LTR MaLR 567 691 -889 4 2002 294 301 79 53 chr1 185796602 185796907 -11398525 + ORR1E LTR MaLR 52 379 0 4 2002 624 299 86 0 chr1 185797480 185797667 -11397765 - ID_B1 SINE B4 -21 203 1 4 2002 1108 176 5 10 chr1 185797706 185797912 -11397520 + Lx4B LINE L1 6854 7058 0 4 2002 536 132 0 42 chr1 185797928 185798047 -11397385 + GA-rich Low_complexity Low_complexity 3 116 0 5 2002 1907 32 0 0 chr1 185799460 185799677 -11395755 + L1Md_F2 LINE L1 5370 5586 -297 5 2002 8228 40 5 9 chr1 185799678 185800675 -11394757 + L1Md_F2 LINE L1 5588 6580 -2 5 2002 232 269 84 102 chr1 185800735 185800950 -11394482 - L1M5 LINE L1 -389 5735 5525 5 2002 3357 38 10 5 chr1 185801428 185801826 -11393606 + MTB LTR MaLR 1 400 0 5 2002 1815 180 83 0 chr1 185801861 185802200 -11393232 - ORR1B2 LTR MaLR 0 367 1 5 2002 2114 168 49 8 chr1 185802459 185802850 -11392582 + MTB_Mm LTR MaLR 1 407 0 5 2002 585 40 0 0 chr1 185804947 185805023 -11390409 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 2002 702 268 85 10 chr1 185805062 185805262 -11390170 - B4 SINE B4 -75 217 3 5 2002 414 217 126 29 chr1 185805318 185805480 -11389952 - L1MB3 LINE L1 -115 6068 5892 5 2002 324 270 33 83 chr1 185806763 185806884 -11388548 + B4A SINE B4 178 292 0 5 2002 296 333 0 0 chr1 185806915 185807023 -11388409 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 2002 877 287 31 48 chr1 185808371 185808722 -11386710 + MLT1A0 LTR MaLR 10 354 -11 5 2002 900 310 12 4 chr1 185808830 185809076 -11386356 + B4A SINE B4 1 248 -44 5 2002 714 203 13 6 chr1 185809078 185809237 -11386195 + ORR1C1 LTR MaLR 1 160 -218 5 2002 28 29 0 0 chr1 185812069 185812104 -11383328 + AT_rich Low_complexity Low_complexity 1 35 0 5 2002 190 136 45 0 chr1 185812107 185812151 -11383281 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 5 2002 21 0 0 0 chr1 185812311 185812332 -11383100 + AT_rich Low_complexity Low_complexity 1 21 0 5 2002 586 297 0 7 chr1 185812353 185812492 -11382940 + B1_Mur1 SINE Alu 1 138 -11 5 2002 216 0 0 0 chr1 185812498 185812522 -11382910 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 5 2002 333 0 0 0 chr1 185813206 185813243 -11382189 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 2002 1184 36 0 0 chr1 185813243 185813382 -11382050 - B1_Mus1 SINE Alu -9 139 1 5 2002 31 68 0 0 chr1 185813392 185813451 -11381981 + AT_rich Low_complexity Low_complexity 1 59 0 5 2002 276 30 0 0 chr1 185814233 185814266 -11381166 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 2002 288 0 0 0 chr1 185814266 185814297 -11381135 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 2002 1336 105 0 21 chr1 185814581 185814775 -11380657 - B2_Mm2 SINE B2 -5 190 1 5 2002 196 104 62 0 chr1 185814803 185814851 -11380581 + (CTTTG)n Simple_repeat Simple_repeat 4 54 0 5 2002 565 272 66 97 chr1 185814853 185815081 -11380351 - ID_B1 SINE B4 -3 221 1 5 2002 809 278 24 5 chr1 185815602 185815808 -11379624 + B3 SINE B2 1 210 -6 5 2002 682 290 119 7 chr1 185815862 185816140 -11379292 + Lx8 LINE L1 7119 7427 -46 5 2002 1796 230 30 5 chr1 185816179 185816577 -11378855 + MTD LTR MaLR 12 419 0 5 2002 36 70 0 0 chr1 185816586 185816657 -11378775 + AT_rich Low_complexity Low_complexity 1 71 0 5 2002 318 50 0 0 chr1 185817470 185817510 -11377922 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 2002 251 54 27 0 chr1 185818115 185818152 -11377280 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 2002 186 43 0 0 chr1 185818871 185818894 -11376538 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 2002 1443 168 0 0 chr1 185820582 185820808 -11374624 + URR1A DNA MER1_type 1 226 0 5 2002 396 0 0 0 chr1 185821140 185821184 -11374248 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 2002 234 234 0 0 chr1 185821197 185821244 -11374188 + RSINE1 SINE B4 3 49 -116 5 2002 867 268 54 25 chr1 185821362 185821676 -11373756 + L1MC3 LINE L1 6333 6655 -1130 5 2002 267 222 16 0 chr1 185821678 185821741 -11373691 + L1MC3 LINE L1 6605 6668 -1117 5 2002 200 56 83 0 chr1 185821753 185821789 -11373643 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 5 2002 249 151 0 0 chr1 185821831 185821884 -11373548 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 2002 463 269 7 40 chr1 185822047 185822198 -11373234 + L1MC3 LINE L1 6600 6745 -1040 5 2002 376 321 29 7 chr1 185822199 185822337 -11373095 + B1F SINE Alu 4 144 -5 5 2002 265 232 0 10 chr1 185822361 185822427 -11373005 + ID2 SINE ID 1 63 -20 5 2002 227 333 86 0 chr1 185822436 185822517 -11372915 + L1MC3 LINE L1 6765 6852 -1143 5 2002 627 221 24 0 chr1 185822683 185822810 -11372622 - B1_Mur3 SINE Alu -19 130 1 5 2002 251 273 30 0 chr1 185822868 185822934 -11372498 - MLT1H1 LTR MaLR -429 126 59 5 2002 360 0 0 0 chr1 185823048 185823088 -11372344 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 5 2002 414 121 0 0 chr1 185823144 185823210 -11372222 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 2002 286 217 80 57 chr1 185823213 185823301 -11372131 - RSINE1 SINE B4 -63 102 13 5 2002 2491 176 48 8 chr1 185823574 185824049 -11371383 - Lx9 LINE L1 -638 7006 6513 5 2002 2602 183 135 11 chr1 185824061 185824504 -11370928 + Lx9 LINE L1 7010 7519 -125 5 2002 414 0 0 0 chr1 185824504 185824550 -11370882 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 2002 2602 183 135 11 chr1 185824550 185824670 -11370762 + Lx9 LINE L1 7520 7643 -1 5 2002 1241 171 149 24 chr1 185824707 185825036 -11370396 - ORR1D1 LTR MaLR 0 374 5 5 2002 854 200 88 49 chr1 185825351 185825556 -11369876 + B3 SINE B2 2 214 -2 5 2002 225 0 0 0 chr1 185825708 185825733 -11369699 + (T)n Simple_repeat Simple_repeat 1 25 0 5 2002 1254 48 0 0 chr1 185825733 185825880 -11369552 - B1_Mm SINE Alu 0 147 1 5 2002 552 316 10 49 chr1 185826208 185826411 -11369021 + B4 SINE B4 3 197 -95 5 2002 2789 119 13 9 chr1 185826711 185827161 -11368271 + RLTR11B LTR ERVK 2 453 0 5 2002 247 270 0 43 chr1 185827412 185827505 -11367927 + LTR33A_ LTR ERVL 432 520 -11 5 2002 887 267 65 40 chr1 185831182 185831459 -11363973 - ORR1E LTR MaLR -75 284 1 5 2002 24 0 0 0 chr1 185831787 185831811 -11363621 + AT_rich Low_complexity Low_complexity 1 24 0 5 2002 1233 34 0 7 chr1 185831811 185831959 -11363473 + B1_Mus2 SINE Alu 1 147 0 5 2002 763 265 107 102 chr1 185832385 185832788 -11362644 + MTD LTR MaLR 1 405 -14 5 2002 189 0 0 0 chr1 185833056 185833077 -11362355 + (T)n Simple_repeat Simple_repeat 1 21 0 5 2002 265 250 165 22 chr1 185833332 185833733 -11361699 + L1MEc LINE L1 2144 2586 -3733 5 2002 776 222 82 18 chr1 185833829 185834015 -11361417 + B3 SINE B2 29 207 -9 5 2002 1010 53 8 0 chr1 185834203 185834336 -11361096 + (TAGA)n Simple_repeat Simple_repeat 4 137 0 5 2002 373 208 0 15 chr1 185834344 185834423 -11361009 - MLT2C1 LTR ERVL -60 503 422 5 2002 546 250 56 25 chr1 185834420 185834580 -11360852 - MLT2C1 LTR ERVL -199 198 34 5 2002 473 188 33 61 chr1 185835073 185835190 -11360242 - B1_Mur1 SINE Alu -9 140 5 5 2002 822 225 80 0 chr1 185835248 185835448 -11359984 - B3 SINE B2 0 216 1 5 2002 357 248 269 44 chr1 185835716 185835876 -11359556 - Arthur1 DNA Tip100 -3377 570 375 5 2002 242 280 39 39 chr1 185835951 185836029 -11359403 - Arthur1 DNA Tip100 -3798 149 72 5 2002 537 92 0 0 chr1 185836187 185836263 -11359169 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 5 2002 1215 54 0 0 chr1 185836263 185836410 -11359022 + B1_Mus2 SINE Alu 1 147 0 5 2002 272 150 0 0 chr1 185836412 185836452 -11358980 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 5 2002 213 94 0 0 chr1 185836880 185836912 -11358520 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 5 2002 23 0 0 0 chr1 185837000 185837023 -11358409 + AT_rich Low_complexity Low_complexity 1 23 0 5 2002 363 282 39 0 chr1 185837050 185837153 -11358279 - PB1D10 SINE Alu -9 108 2 5 2002 218 353 0 0 chr1 185837172 185837240 -11358192 + MIRb SINE MIR 164 231 -37 5 2002 1373 235 113 3 chr1 185837469 185837806 -11357626 + MTEa LTR MaLR 3 376 -3 5 2002 1397 89 5 5 chr1 185837825 185838018 -11357414 + B2_Mm1a SINE B2 1 193 0 5 2002 617 25 0 12 chr1 185838316 185838396 -11357036 + (TTTTG)n Simple_repeat Simple_repeat 2 80 0 5 2002 648 233 30 0 chr1 185838396 185838529 -11356903 - B1_Mur1 SINE Alu -11 138 2 5 2002 257 286 32 142 chr1 185838398 185838553 -11356879 - MT2B LTR ERVL -320 281 144 5 2002 782 269 57 27 chr1 185839253 185839586 -11355846 + RLTR15 LTR ERVK 1 343 -16 5 2002 366 23 0 0 chr1 185839714 185839757 -11355675 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 2002 306 0 0 0 chr1 185839986 185840020 -11355412 + (T)n Simple_repeat Simple_repeat 1 34 0 5 2002 180 0 0 0 chr1 185840118 185840138 -11355294 + (T)n Simple_repeat Simple_repeat 1 20 0 5 2002 200 250 88 59 chr1 185840338 185840440 -11354992 + MIRb SINE MIR 88 192 -76 5 2002 246 332 188 67 chr1 185840712 185840951 -11354481 + B4 SINE B4 2 269 -23 5 2002 255 75 0 0 chr1 185840953 185840973 -11354459 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 5 2002 1236 34 0 13 chr1 185840973 185841122 -11354310 - B1_Mus2 SINE Alu 0 147 1 5 2002 255 75 0 0 chr1 185841122 185841141 -11354291 + (TTTTTG)n Simple_repeat Simple_repeat 4 22 0 5 2002 342 0 0 0 chr1 185841147 185841185 -11354247 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 2002 26 0 0 0 chr1 185841400 185841426 -11354006 + AT_rich Low_complexity Low_complexity 1 26 0 5 2002 1911 146 22 19 chr1 185842124 185842446 -11352986 + ORR1A3 LTR MaLR 3 325 -1 5 2002 679 203 121 30 chr1 185842595 185842793 -11352639 - B3 SINE B2 0 216 1 5 2002 1624 174 87 56 chr1 185842962 185843388 -11352044 - RMER10A LTR ERVL 0 442 4 5 2002 21 0 0 0 chr1 185844201 185844222 -11351210 + GC_rich Low_complexity Low_complexity 1 21 0 5 2002 1187 54 0 0 chr1 185844254 185844401 -11351031 - B1_Mm SINE Alu 0 147 1 5 2002 1952 147 44 55 chr1 185844963 185845330 -11350102 + RLTR28B LTR ERVL 103 465 -16 5 2002 287 194 32 0 chr1 185845334 185845396 -11350036 - B4A SINE B4 -71 221 158 5 2002 507 33 0 0 chr1 185845605 185845666 -11349766 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 2002 851 85 17 8 chr1 185845669 185845787 -11349645 - PB1D9 SINE Alu 0 120 2 5 2002 4389 79 23 0 chr1 185845952 185846523 -11348909 + MT2B2 LTR ERVL 1 584 0 6 2002 316 221 77 20 chr1 185846579 185846677 -11348755 - MER33 DNA MER1_type -81 128 5 6 2002 239 349 0 0 chr1 185846725 185846808 -11348624 + ID4 SINE ID 1 83 0 6 2002 282 160 0 0 chr1 185847693 185847743 -11347689 + CT-rich Low_complexity Low_complexity 1 50 0 6 2002 600 309 64 41 chr1 185847751 185848065 -11347367 - MLT2D LTR ERVL -48 366 46 6 2002 231 284 76 95 chr1 185848231 185848336 -11347096 - LTR81A LTR ERV1? -814 536 434 6 2002 240 294 23 23 chr1 185848585 185848672 -11346760 - MTEb LTR MaLR -1 378 292 6 2002 3582 18 2 0 chr1 185849322 185849717 -11345715 - MTA_Mm LTR MaLR 0 396 1 6 2002 621 226 37 15 chr1 185849950 185850085 -11345347 + ORR1D2 LTR MaLR 1 138 -232 6 2002 4234 194 31 69 chr1 185850110 185851070 -11344362 - Lx5 LINE L1 -1 7049 6126 6 2002 797 216 46 31 chr1 185851073 185851269 -11344163 + ORR1D2 LTR MaLR 152 350 -20 6 2002 21 0 0 0 chr1 185851375 185851396 -11344036 + AT_rich Low_complexity Low_complexity 1 21 0 6 2002 757 231 23 6 chr1 185851414 185851588 -11343844 - B3 SINE B2 -13 203 27 6 2002 370 269 21 62 chr1 185851603 185851777 -11343655 - B4A SINE B4 -41 251 2 6 2002 630 316 11 39 chr1 185851790 185851920 -11343512 - B3A SINE B2 0 216 86 6 2002 2833 59 143 139 chr1 185851920 185852430 -11343002 + RLTR1B LTR ERV1 1 512 0 6 2002 630 315 0 33 chr1 185852430 185852518 -11342914 - B3A SINE B2 -111 87 1 6 2002 1176 73 59 24 chr1 185852555 185852724 -11342708 - B2_Mm2 SINE B2 -12 183 9 6 2002 8202 40 12 0 chr1 185852725 185853689 -11341743 - L1Md_F2 LINE L1 -1 6581 5606 6 2002 226 322 142 17 chr1 185854636 185854756 -11340676 - MER33 DNA MER1_type -2 322 188 6 2002 378 274 86 18 chr1 185854776 185854909 -11340523 - MER33 DNA MER1_type -188 136 1 6 2002 453 301 117 64 chr1 185855015 185855281 -11340151 - MLT1A0 LTR MaLR -53 312 33 6 2002 513 32 0 0 chr1 185858498 185858561 -11336871 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 2002 324 130 0 0 chr1 185858561 185858630 -11336802 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 2002 281 118 20 0 chr1 185859210 185859261 -11336171 + (GGGA)n Simple_repeat Simple_repeat 3 54 0 6 2002 333 0 0 0 chr1 185859932 185859969 -11335463 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 2003 396 40 0 0 chr1 185862467 185862517 -11332915 + (GGGTG)n Simple_repeat Simple_repeat 1 50 0 6 2003 211 211 19 19 chr1 185867049 185867102 -11328330 - B1F SINE Alu 0 149 97 6 2003 464 257 0 84 chr1 185867289 185867408 -11328024 - MER5B DNA MER1_type -69 109 1 6 2003 292 275 55 0 chr1 185867408 185867499 -11327933 - MIR3 SINE MIR -48 160 65 6 2003 274 244 34 68 chr1 185867845 185867933 -11327499 + B4 SINE B4 2 86 -206 6 2003 270 0 0 0 chr1 185868127 185868157 -11327275 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 6 2003 32 0 0 0 chr1 185868577 185868609 -11326823 + AT_rich Low_complexity Low_complexity 1 32 0 6 2003 212 259 37 0 chr1 185868629 185868683 -11326749 - MIRb SINE MIR -196 72 17 6 2003 749 260 201 20 chr1 185868697 185868995 -11326437 - MTE2b LTR MaLR 0 379 28 6 2003 452 293 0 8 chr1 185869474 185869591 -11325841 - MTEa LTR MaLR -1 378 263 6 2003 297 263 40 0 chr1 185869677 185869753 -11325679 - MTEa LTR MaLR -280 99 21 6 2003 180 0 0 0 chr1 185870661 185870681 -11324751 + (A)n Simple_repeat Simple_repeat 1 20 0 6 2003 235 222 0 0 chr1 185871787 185871832 -11323600 + CT-rich Low_complexity Low_complexity 2 46 0 6 2003 373 252 157 0 chr1 185871856 185871971 -11323461 - ID_B1 SINE B4 -5 219 87 6 2003 271 240 81 47 chr1 185872100 185872240 -11323192 + MIR SINE MIR 48 193 -83 6 2003 447 280 29 92 chr1 185873371 185873544 -11321888 - RSINE1 SINE B4 0 165 4 6 2003 414 0 0 0 chr1 185874051 185874097 -11321335 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 2003 239 304 162 62 chr1 185874145 185874324 -11321108 - B3 SINE B2 -10 206 10 6 2003 376 243 96 103 chr1 185874170 185874326 -11321106 - RSINE1 SINE B4 -2 163 9 6 2003 412 308 81 56 chr1 185874321 185874555 -11320877 - B4A SINE B4 -51 241 2 6 2003 259 252 173 31 chr1 185875367 185875494 -11319938 + MER33 DNA MER1_type 168 312 -12 6 2003 232 327 68 19 chr1 185875525 185875628 -11319804 - MIRc SINE MIR -112 156 49 6 2003 376 331 64 125 chr1 185875670 185876236 -11319196 + MER77 LTR ERVL 66 596 -11 6 2003 301 320 93 145 chr1 185875707 185876426 -11319006 + MER21B LTR ERV1 62 743 -120 6 2003 195 42 0 0 chr1 185876983 185877007 -11318425 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 6 2003 333 0 0 0 chr1 185877703 185877740 -11317692 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 2003 435 233 203 30 chr1 185877763 185877896 -11317536 - B4A SINE B4 -131 161 6 6 2003 8259 27 28 0 chr1 185878991 185880069 -11315363 - L1Md_F2 LINE L1 0 6582 5475 6 2003 1998 301 58 10 chr1 185880733 185881348 -11314084 - MER21B LTR ERV1 -157 706 62 6 2003 239 71 24 0 chr1 185882512 185882554 -11312878 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 2003 1061 68 30 0 chr1 185882554 185882687 -11312745 - B1_Mus1 SINE Alu -10 138 2 6 2003 279 311 36 29 chr1 185883610 185883749 -11311683 - MLT1A1 LTR MaLR -1 407 268 6 2003 310 221 29 14 chr1 185884041 185884110 -11311322 - MLT1A LTR MaLR -17 357 288 6 2003 768 42 0 0 chr1 185884613 185884709 -11310723 + (CA)n Simple_repeat Simple_repeat 2 97 0 6 2003 1114 240 45 52 chr1 185885146 185885436 -11309996 - B4A SINE B4 -4 288 1 6 2003 545 248 0 9 chr1 185886014 185886128 -11309304 - ID_B1 SINE B4 -1 223 111 6 2003 479 266 62 41 chr1 185886128 185886154 -11309278 - B1F SINE Alu 0 144 2 6 2003 960 272 5 0 chr1 185886714 185886931 -11308501 - ID_B1 SINE B4 -5 219 2 6 2003 716 122 35 12 chr1 185887132 185887389 -11308043 + GA-rich Low_complexity Low_complexity 1 262 0 6 2003 22 0 0 0 chr1 185887990 185888012 -11307420 + AT_rich Low_complexity Low_complexity 1 22 0 6 2003 209 350 46 59 chr1 185888080 185888232 -11307200 - MIRc SINE MIR -116 152 3 6 2003 288 0 0 0 chr1 185889225 185889257 -11306175 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 2003 671 307 6 6 chr1 185889264 185889444 -11305988 - B4A SINE B4 -112 180 1 6 2003 219 292 56 0 chr1 185891566 185891638 -11303794 - RSINE1 SINE B4 -10 155 80 6 2003 267 31 0 0 chr1 185893209 185893241 -11302191 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 2003 487 289 16 0 chr1 185894104 185894232 -11301200 - ORR1E LTR MaLR -229 130 1 6 2003 423 319 66 38 chr1 185895336 185895548 -11299884 + B4A SINE B4 1 218 -74 6 2003 197 244 52 72 chr1 185896256 185896353 -11299079 - MIRb SINE MIR -132 136 42 6 2003 324 0 0 0 chr1 185896978 185897014 -11298418 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 2003 556 303 51 29 chr1 185897376 185897651 -11297781 + B4A SINE B4 1 281 -11 6 2003 239 262 0 16 chr1 185897671 185897733 -11297699 + (CATA)n Simple_repeat Simple_repeat 2 62 0 6 2003 538 310 0 33 chr1 185897757 185897907 -11297525 + RSINE1 SINE B4 3 147 -18 6 2003 490 124 11 11 chr1 185898474 185898564 -11296868 + (TTTTC)n Simple_repeat Simple_repeat 2 91 0 6 2003 252 0 0 0 chr1 185899082 185899110 -11296322 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 2003 221 313 15 0 chr1 185899251 185899318 -11296114 + CT-rich Low_complexity Low_complexity 3 70 0 6 2003 30 27 0 0 chr1 185899389 185899426 -11296006 + AT_rich Low_complexity Low_complexity 1 37 0 6 2003 207 184 26 0 chr1 185900533 185900571 -11294861 + CT-rich Low_complexity Low_complexity 4 42 0 6 2003 359 308 175 21 chr1 185902290 185902575 -11292857 - ERVL-E-int LTR ERVL -423 5291 4963 6 2003 350 42 0 20 chr1 185902601 185902650 -11292782 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 2003 515 257 76 0 chr1 185902651 185902795 -11292637 - B3A SINE B2 -41 157 3 6 2003 664 282 16 82 chr1 185903025 185903330 -11292102 + RLTR11B LTR ERVK 1 285 -168 6 2003 424 246 22 72 chr1 185903360 185903539 -11291893 + RLTR11B LTR ERVK 278 494 -34 6 2003 425 316 112 16 chr1 185903578 185903950 -11291482 - ERVL-E-int LTR ERVL -1010 4657 4313 6 2003 646 336 136 26 chr1 185904098 185904633 -11290799 - ERVL-E-int LTR ERVL -1584 4083 3490 6 2003 1098 89 0 72 chr1 185905210 185905243 -11290189 - B2_Mm2 SINE B2 -15 180 159 6 2003 217 25 0 91 chr1 185905243 185905287 -11290145 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 2003 1300 19 0 0 chr1 185905287 185905447 -11289985 - B2_Mm1a SINE B2 -33 160 1 6 2003 1090 78 52 0 chr1 185905453 185905607 -11289825 - B2_Mm2 SINE B2 -33 162 1 6 2003 450 310 97 18 chr1 185905790 185906007 -11289425 - ERVL-E-int LTR ERVL -2923 2791 2558 6 2003 254 315 68 15 chr1 185906020 185906152 -11289280 - MER58A DNA MER1_type -11 213 75 6 2003 515 327 45 39 chr1 185906226 185906538 -11288894 - ERVL-E-int LTR ERVL -3171 2496 2183 6 2003 568 332 159 32 chr1 185906545 185906980 -11288452 - MLT1G1 LTR MaLR -17 562 73 6 2003 204 40 0 0 chr1 185907444 185907469 -11287963 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 2003 200 132 26 0 chr1 185907678 185907716 -11287716 + T-rich Low_complexity Low_complexity 2 40 0 6 2003 494 57 0 14 chr1 185909196 185909267 -11286165 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 2003 2174 93 186 14 chr1 185910511 185910871 -11284561 + BGLII_Mus LTR ERVK 1 422 0 6 2003 194 296 32 87 chr1 185911090 185911216 -11284216 + MIRm SINE MIR 48 166 -110 6 2003 4454 139 31 14 chr1 185911319 185912062 -11283370 - RMER6A LTR ERVK 0 756 1 6 2003 345 333 70 13 chr1 185912202 185912360 -11283072 + MER63A DNA AcHobo 1 167 -43 6 2003 1519 63 5 0 chr1 185912393 185912584 -11282848 + B2_Mm1a SINE B2 2 193 0 6 2003 228 346 153 7 chr1 185913648 185913785 -11281647 - MER5A1 DNA MER1_type -9 157 1 6 2003 219 146 0 0 chr1 185915491 185915532 -11279900 + (TCC)n Simple_repeat Simple_repeat 2 42 0 6 2003 2968 43 67 11 chr1 185916353 185916728 -11278704 - MTA_Mm LTR MaLR 0 396 1 6 2003 895 273 52 0 chr1 185917534 185917801 -11277631 + Lx8 LINE L1 7072 7352 -121 6 2003 293 269 11 11 chr1 185918078 185918172 -11277260 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 2003 245 159 30 45 chr1 185918187 185918253 -11277179 - B4A SINE B4 -56 236 172 7 2003 385 338 0 0 chr1 185918330 185918478 -11276954 + (CA)n Simple_repeat Simple_repeat 1 148 0 7 2003 948 48 8 0 chr1 185918496 185918620 -11276812 - B1_Mm SINE Alu -1 146 22 7 2003 468 0 0 0 chr1 185918809 185918861 -11276571 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 2003 648 282 101 18 chr1 185918899 185919126 -11276306 - B4A SINE B4 -44 248 3 7 2003 782 328 84 96 chr1 185919299 185920066 -11275366 - Charlie1a DNA MER1_type -660 795 38 7 2003 253 330 20 10 chr1 185920136 185920237 -11275195 + B3A SINE B2 67 168 -30 7 2003 393 86 0 0 chr1 185920243 185920301 -11275131 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 2003 351 98 0 0 chr1 185921415 185921476 -11273956 + (A)n Simple_repeat Simple_repeat 1 61 0 7 2003 1107 163 114 0 chr1 185922111 185922313 -11273119 - URR1A DNA MER1_type 0 226 2 7 2003 631 256 30 40 chr1 185922598 185922797 -11272635 - B3A SINE B2 -1 197 1 7 2003 396 0 0 0 chr1 185923189 185923233 -11272199 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 2003 377 236 11 33 chr1 185923308 185923400 -11272032 - B3 SINE B2 -126 90 1 7 2003 432 295 15 8 chr1 185925708 185925838 -11269594 + ORR1E LTR MaLR 5 135 -224 7 2003 402 261 50 96 chr1 185927015 185927047 -11268385 - B2_Mm2 SINE B2 -5 190 158 7 2003 450 0 0 0 chr1 185927047 185927097 -11268335 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 2003 354 80 0 0 chr1 185927097 185927146 -11268286 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 2003 653 261 50 96 chr1 185927146 185927311 -11268121 - B3A SINE B2 -38 160 1 7 2003 256 286 108 26 chr1 185927321 185927432 -11268000 - PB1D7 SINE Alu -1 119 1 7 2003 226 238 95 0 chr1 185927433 185927464 -11267968 - BC1_Mm scRNA scRNA -42 110 78 7 2003 405 0 0 0 chr1 185927464 185927509 -11267923 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 7 2003 226 238 95 0 chr1 185927509 185927561 -11267871 - BC1_Mm scRNA scRNA -75 77 20 7 2003 4872 69 17 2 chr1 185927581 185928221 -11267211 - L1_Mus1 LINE L1 -1 6566 5917 7 2003 5958 81 39 31 chr1 185928223 185929668 -11265764 - L1Md_F2 LINE L1 0 6582 5113 7 2003 291 54 0 0 chr1 185929668 185929705 -11265727 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 7 2003 1936 160 147 34 chr1 185929753 185930167 -11265265 - RMER6B LTR ERVK 0 461 1 7 2003 558 170 56 9 chr1 185930167 185930274 -11265158 - RMER6B LTR ERVK -349 112 1 7 2003 286 206 45 41 chr1 185931216 185931333 -11264099 + L1MB5 LINE L1 5911 6014 -170 7 2003 517 267 14 22 chr1 185931424 185931562 -11263870 - RSINE1 SINE B4 -26 139 3 7 2003 466 339 62 46 chr1 185931704 185931899 -11263533 - ID_B1 SINE B4 0 224 27 7 2003 1531 320 45 25 chr1 185932268 185932864 -11262568 - Lx8 LINE L1 -528 6945 6338 7 2003 424 275 52 26 chr1 185932882 185933035 -11262397 + Lx8 LINE L1 6179 6335 -1138 7 2003 1269 244 155 22 chr1 185934612 185935076 -11260356 - MT2A LTR ERVL -7 526 1 7 2003 360 333 39 17 chr1 185935077 185935257 -11260175 - L1M5 LINE L1 -574 5588 5405 7 2003 369 198 0 0 chr1 185935634 185935720 -11259712 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 2003 258 243 0 0 chr1 185936067 185936129 -11259303 + MIRc SINE MIR 35 100 -168 7 2003 520 243 37 0 chr1 185936856 185936963 -11258469 + B1_Mur1 SINE Alu 7 117 -32 7 2003 2043 147 28 36 chr1 185936990 185937379 -11258053 + ORR1B1 LTR MaLR 1 386 -8 7 2003 223 49 24 24 chr1 185937596 185937638 -11257794 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 7 2003 1834 281 81 30 chr1 185937669 185938260 -11257172 - Lx8 LINE L1 -160 7313 6693 7 2003 1008 328 29 22 chr1 185938764 185939173 -11256259 + Lx8 LINE L1 6905 7316 -157 7 2003 360 92 327 18 chr1 185939428 185939538 -11255894 - B2_Mm2 SINE B2 -5 190 47 7 2003 1236 82 35 0 chr1 185939564 185939734 -11255698 - B2_Mm1t SINE B2 -16 177 2 7 2003 273 350 0 0 chr1 185940154 185940257 -11255175 - MIRb SINE MIR -132 136 34 7 2003 414 57 0 0 chr1 185941066 185941119 -11254313 + (CAG)n Simple_repeat Simple_repeat 1 53 0 7 2003 548 366 36 0 chr1 185942130 185942324 -11253108 + B4A SINE B4 1 201 -91 7 2003 1925 150 85 16 chr1 185942326 185942713 -11252719 + MTC LTR MaLR 1 414 -7 7 2003 247 291 33 55 chr1 185942715 185942806 -11252626 + B4A SINE B4 198 286 -6 7 2003 396 0 0 0 chr1 185942839 185942883 -11252549 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 2003 378 0 0 0 chr1 185942883 185942924 -11252508 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 2003 4501 32 19 0 chr1 185944437 185944969 -11250463 - L1Md_F3 LINE L1 -13 6571 6030 7 2003 590 261 64 43 chr1 185944985 185944997 -11250435 - B3A SINE B2 -6 192 184 7 2003 252 111 0 0 chr1 185944997 185945042 -11250390 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 7 2003 590 261 64 43 chr1 185945042 185945217 -11250215 - B3A SINE B2 -15 183 1 7 2003 294 29 0 0 chr1 185945579 185945614 -11249818 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 2003 1869 312 75 22 chr1 185946114 185947005 -11248427 - Kanga1 DNA Tc2 -784 961 24 7 2003 313 391 44 25 chr1 185947258 185947418 -11248014 - RSINE1 SINE B4 0 165 3 7 2003 225 299 20 49 chr1 185948218 185948320 -11247112 + MTE2b LTR MaLR 13 111 -308 7 2003 684 223 79 55 chr1 185948475 185948748 -11246684 + MTE2b LTR MaLR 125 379 0 7 2003 719 214 0 8 chr1 185948792 185948924 -11246508 + B1_Mur1 SINE Alu 2 132 -17 7 2003 323 383 65 14 chr1 185949566 185949783 -11245649 + LTR84b LTR ERVL 419 646 -115 7 2003 760 253 139 12 chr1 185951534 185951786 -11243646 + B4A SINE B4 7 290 -2 7 2003 821 233 117 16 chr1 185953656 185953905 -11241527 + MTEa LTR MaLR 33 306 -73 7 2003 452 162 74 29 chr1 185953972 185954088 -11241344 + MTEa LTR MaLR 234 379 0 7 2003 215 276 52 0 chr1 185954494 185954552 -11240880 + L2a LINE L2 3357 3417 -9 7 2003 180 111 0 0 chr1 185956123 185956150 -11239282 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 7 2003 351 194 14 50 chr1 185956557 185956611 -11238821 + polypyrimidine Low_complexity Low_complexity 83 136 0 7 2003 2570 164 49 25 chr1 185956611 185957125 -11238307 - RLTR11A2 LTR ERVK 0 527 2 7 2003 351 194 14 50 chr1 185957125 185957211 -11238221 + CT-rich Low_complexity Low_complexity 1 82 0 7 2003 447 168 30 96 chr1 185957992 185958190 -11237242 - RMER17C LTR ERVK -137 273 89 7 2003 4353 50 0 0 chr1 185958280 185958804 -11236628 - L1Md_F2 LINE L1 -6 6576 6053 7 2003 480 51 0 0 chr1 185958804 185958863 -11236569 + L1Md_F2 LINE L1 5998 6056 -526 7 2003 1225 41 7 0 chr1 185958923 185959069 -11236363 + B1_Mus2 SINE Alu 1 147 0 7 2003 7590 98 66 10 chr1 185959114 185960400 -11235032 + Lx4A LINE L1 4592 5987 -1071 7 2003 256 261 41 17 chr1 185960771 185960882 -11234550 + Lx8 LINE L1 5821 5930 -1714 7 2003 706 216 38 18 chr1 185961984 185962169 -11233263 + B3A SINE B2 1 216 0 7 2003 213 309 122 81 chr1 185962192 185962414 -11233018 + B4 SINE B4 2 232 -60 7 2003 331 322 18 49 chr1 185963182 185963345 -11232087 - RSINE1 SINE B4 0 165 8 7 2003 639 257 44 28 chr1 185963476 185963728 -11231704 - L1_Rod LINE L1 -352 5495 5240 7 2003 612 278 92 0 chr1 185963753 185963926 -11231506 + ORR1E LTR MaLR 1 189 -170 7 2003 596 269 21 21 chr1 185963969 185964159 -11231273 + ORR1E LTR MaLR 164 353 -6 7 2003 1059 260 44 61 chr1 185964928 185965288 -11230144 + ORR1E LTR MaLR 6 359 0 7 2003 763 277 0 11 chr1 185965992 185966171 -11229261 - B3A SINE B2 -21 177 1 7 2003 333 276 67 33 chr1 185966384 185966534 -11228898 - L1ME4a LINE L1 -4 6120 5966 7 2003 302 82 0 39 chr1 185967146 185967197 -11228235 + (TTCA)n Simple_repeat Simple_repeat 2 50 0 7 2003 372 231 36 29 chr1 185967222 185967360 -11228072 + CT-rich Low_complexity Low_complexity 1 139 0 7 2003 609 285 7 7 chr1 185967409 185967554 -11227878 + B4 SINE B4 67 211 -81 7 2003 808 89 56 9 chr1 185967561 185967902 -11227530 + (TAGA)n Simple_repeat Simple_repeat 1 357 0 7 2003 237 59 0 0 chr1 185968473 185968507 -11226925 - tRNA-Ser-AGY tRNA tRNA -47 38 5 7 2003 1679 196 82 0 chr1 185969784 185970126 -11225306 - ORR1D1 LTR MaLR 0 374 5 7 2003 1043 270 49 72 chr1 185970461 185970504 -11224928 - MTEb LTR MaLR -1 378 337 7 2003 597 177 152 15 chr1 185970504 185970636 -11224796 + B1_Mur4 SINE Alu 1 150 0 7 2003 1108 267 45 7 chr1 185970636 185970979 -11224453 - MTEb LTR MaLR -30 349 1 7 2003 255 103 0 0 chr1 185971429 185971468 -11223964 + (CATA)n Simple_repeat Simple_repeat 2 40 0 7 2003 571 293 11 107 chr1 185971529 185971800 -11223632 + MTE2a LTR MaLR 1 245 -134 7 2003 715 117 31 0 chr1 185971846 185971974 -11223458 + (TCTCCC)n Simple_repeat Simple_repeat 3 134 0 7 2003 277 161 36 0 chr1 185972073 185972129 -11223303 - ID4 SINE ID 0 83 26 7 2003 328 232 130 1 chr1 185972158 185972248 -11223184 - PB1D10 SINE Alu -7 113 11 7 2003 40393 34 5 6 chr1 185972378 185979155 -11216277 - L1Md_T LINE L1 0 6582 1 7 2003 271 294 78 0 chr1 185979395 185979497 -11215935 - L1M4 LINE L1 -2011 4135 4026 7 2003 448 137 0 31 chr1 185979898 185979996 -11215436 + L1_Mus3 LINE L1 6544 6638 0 7 2003 255 61 0 0 chr1 185980068 185980101 -11215331 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 7 2003 966 140 16 4 chr1 185980101 185980345 -11215087 + GA-rich Low_complexity Low_complexity 1 247 0 7 2003 432 0 0 0 chr1 185980551 185980599 -11214833 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 7 2003 656 260 6 23 chr1 185980822 185980995 -11214437 - MTD LTR MaLR -158 261 92 7 2003 297 323 66 29 chr1 185980986 185981123 -11214309 - Tigger5 DNA MER2_type -2245 161 20 7 2003 320 296 0 0 chr1 185981210 185981291 -11214141 + MER57C2 LTR ERV1 243 323 -111 7 2003 6020 43 0 0 chr1 185981521 185982234 -11213198 + L1Md_F2 LINE L1 5868 6580 -2 7 2003 25 31 0 0 chr1 185982272 185982304 -11213128 + AT_rich Low_complexity Low_complexity 1 32 0 7 2003 5486 120 68 9 chr1 185982475 185983376 -11212056 - RMER17B LTR ERVK -4 954 1 8 2003 2657 39 0 0 chr1 185983510 185983822 -11211610 - L1_Mus1 LINE L1 0 6567 6256 8 2003 441 262 92 58 chr1 185983853 185984027 -11211405 - B3A SINE B2 -18 180 1 8 2003 493 238 33 0 chr1 185984107 185984229 -11211203 - MTD LTR MaLR -6 413 288 8 2003 392 266 7 114 chr1 185984223 185984363 -11211069 - MTD LTR MaLR -294 127 3 8 2003 890 80 68 68 chr1 185985718 185985865 -11209567 + B1_Mus1 SINE Alu 1 147 -1 8 2003 329 109 18 0 chr1 185986345 185986400 -11209032 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 8 2003 560 172 116 26 chr1 185986400 185986555 -11208877 - Lx5 LINE L1 -16 7034 6866 8 2003 3267 55 2 2 chr1 185986640 185987040 -11208392 - MTB LTR MaLR 0 400 1 8 2003 320 296 116 30 chr1 185987042 185987206 -11208226 - Lx8 LINE L1 -371 7102 6925 8 2003 315 234 16 8 chr1 185987870 185987995 -11207437 + CT-rich Low_complexity Low_complexity 3 128 0 8 2003 189 107 0 0 chr1 185988591 185988619 -11206813 + (TATG)n Simple_repeat Simple_repeat 3 30 0 8 2003 201 121 0 0 chr1 185988665 185988698 -11206734 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 8 2003 5678 142 6 2 chr1 185988702 185989565 -11205867 - Lx4A LINE L1 -1 7057 6192 8 2003 2053 118 6 0 chr1 185989632 185989947 -11205485 + ORR1A4 LTR MaLR 13 329 0 8 2003 2284 148 59 28 chr1 185989947 185990406 -11205026 + ORR1A4-int LTR MaLR 1 473 -1490 8 2003 636 176 10 114 chr1 185990399 185990577 -11204855 - ORR1A4 LTR MaLR -190 204 2 8 2003 330 226 0 2 chr1 185990668 185990747 -11204685 - B4A SINE B4 -214 78 1 8 2003 200 321 55 88 chr1 185990783 185990964 -11204468 - MIR3 SINE MIR -21 187 13 8 2004 434 346 4 43 chr1 185991648 185991672 -11203760 - ID_B1 SINE B4 -46 246 142 8 2004 566 308 0 0 chr1 185991672 185991805 -11203627 - B1F SINE Alu -7 142 10 8 2004 434 346 4 43 chr1 185991805 185991817 -11203615 - ID_B1 SINE B4 -46 141 79 8 2004 417 138 0 0 chr1 185993744 185993824 -11201608 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 2004 215 151 0 54 chr1 185994148 185994204 -11201228 + CT-rich Low_complexity Low_complexity 4 56 0 8 2004 1165 75 0 0 chr1 185994377 185994523 -11200909 + B1_Mus2 SINE Alu 1 146 -1 8 2004 210 160 0 0 chr1 185994524 185994574 -11200858 + A-rich Low_complexity Low_complexity 1 50 0 8 2004 234 0 0 0 chr1 185995784 185995810 -11199622 + (T)n Simple_repeat Simple_repeat 1 26 0 8 2004 180 135 0 0 chr1 185996134 185996171 -11199261 + (T)n Simple_repeat Simple_repeat 1 37 0 8 2004 475 261 8 30 chr1 185996182 185996316 -11199116 - B4 SINE B4 -105 187 57 8 2004 272 266 52 31 chr1 185996360 185996457 -11198975 - PB1 SINE Alu 0 127 29 8 2004 554 272 87 75 chr1 185997949 185998203 -11197229 + B4 SINE B4 21 277 -15 8 2004 1029 106 0 0 chr1 185998228 185998408 -11197024 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 2004 450 0 0 0 chr1 185998556 185998606 -11196826 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 2004 186 316 143 22 chr1 185999136 185999359 -11196073 - L3 LINE CR1 -257 4232 3983 8 2004 671 257 21 53 chr1 186001382 186001571 -11193861 + B4A SINE B4 97 279 -13 1 2004 417 20 0 0 chr1 186001605 186001655 -11193777 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 2004 462 316 0 0 chr1 186001798 186001915 -11193517 - B3A SINE B2 -81 117 1 3 2004 324 0 0 0 chr1 186002522 186002558 -11192874 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 2004 281 26 26 0 chr1 186003424 186003462 -11191970 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 5 2004 296 265 29 0 chr1 186003465 186003533 -11191899 - B3A SINE B2 -15 183 114 6 2004 445 261 124 80 chr1 186004027 186004389 -11191043 + RMER10A LTR ERVL 65 442 0 7 2004 206 289 0 0 chr1 186004606 186004658 -11190774 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 2004 643 286 6 6 chr1 186004720 186004889 -11190543 - B4 SINE B4 -116 176 8 9 2004 351 244 0 12 chr1 186006166 186006249 -11189183 + RSINE1 SINE B4 82 163 -2 1 2004 568 311 76 8 chr1 186007641 186007878 -11187554 - MER2 DNA MER2_type -4 341 89 1 2004 291 54 0 0 chr1 186007974 186008011 -11187421 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 2004 351 0 0 0 chr1 186008011 186008049 -11187383 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 2004 294 29 0 0 chr1 186008536 186008571 -11186861 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 2004 257 356 0 0 chr1 186008594 186008698 -11186734 - L1MC4a LINE L1 -1306 6576 6473 1 2004 623 200 0 31 chr1 186009552 186009681 -11185751 + B1_Mur4 SINE Alu 18 142 -8 1 2004 291 85 0 0 chr1 186009681 186009728 -11185704 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 2004 229 312 43 0 chr1 186009851 186009944 -11185488 - L1MB2 LINE L1 -118 6053 5957 1 2004 372 284 192 40 chr1 186010132 186010356 -11185076 - B4 SINE B4 0 292 35 1 2004 744 33 0 0 chr1 186010821 186010912 -11184520 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 2004 576 243 90 0 chr1 186010952 186011096 -11184336 - B3A SINE B2 -41 157 1 2 2004 244 229 32 16 chr1 186011148 186011210 -11184222 + CT-rich Low_complexity Low_complexity 1 63 0 2 2004 343 193 132 0 chr1 186011825 186011908 -11183524 - PB1D10 SINE Alu 0 117 24 2 2004 766 83 15 0 chr1 186013378 186013511 -11181921 + (GA)n Simple_repeat Simple_repeat 1 135 0 2 2004 518 203 8 0 chr1 186014364 186014487 -11180945 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 2004 381 58 0 0 chr1 186014896 186014948 -11180484 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 2 2004 444 325 142 51 chr1 186014968 186015055 -11180377 + MER21B LTR ERV1 501 606 -257 2 2004 243 0 0 0 chr1 186015055 186015082 -11180350 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 2004 450 0 0 0 chr1 186015082 186015131 -11180301 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 2004 444 325 142 51 chr1 186015131 186015337 -11180095 + MER21B LTR ERV1 607 821 -42 2 2004 290 332 146 19 chr1 186015540 186015752 -11179680 + MIRb SINE MIR 4 242 -26 3 2004 442 257 8 34 chr1 186015759 186015876 -11179556 - PB1D10 SINE Alu -1 116 3 3 2004 1133 268 53 8 chr1 186016077 186016438 -11178994 + MTEa LTR MaLR 1 377 -2 3 2004 242 266 112 41 chr1 186016659 186016757 -11178675 - MLT1A1 LTR MaLR 0 408 304 3 2004 236 226 181 9 chr1 186016765 186016881 -11178551 - L1MD3 LINE L1 -951 7044 6909 3 2004 857 202 102 10 chr1 186017583 186017788 -11177644 + B4 SINE B4 1 224 -68 3 2004 444 167 0 0 chr1 186017908 186018004 -11177428 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 2004 372 294 112 45 chr1 186018897 186019075 -11176357 + B4A SINE B4 3 192 -100 3 2004 198 224 0 0 chr1 186019155 186019204 -11176228 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 2004 1075 278 149 24 chr1 186020643 186021052 -11174380 + MER21B LTR ERV1 1 460 -403 3 2004 254 360 71 27 chr1 186021139 186021322 -11174110 + MER21B LTR ERV1 583 773 -90 3 2004 771 230 30 6 chr1 186022537 186022703 -11172729 - B4A SINE B4 -14 278 109 4 2004 264 226 16 0 chr1 186023369 186023431 -11172001 - B4A SINE B4 -228 64 2 4 2004 410 292 0 8 chr1 186024465 186024586 -11170846 - MER3 DNA MER1_type -85 124 5 4 2004 611 107 62 6 chr1 186024824 186024984 -11170448 + (TAGA)n Simple_repeat Simple_repeat 3 171 0 4 2004 264 138 46 0 chr1 186025000 186025065 -11170367 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 2004 202 138 35 0 chr1 186025092 186025150 -11170282 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 4 2004 475 147 58 17 chr1 186025177 186025350 -11170082 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 2004 3358 38 5 2 chr1 186025894 186026289 -11169143 - MTA_Mm LTR MaLR 0 396 1 4 2004 234 0 0 0 chr1 186026578 186026604 -11168828 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 2004 9750 54 13 1 chr1 186026886 186028122 -11167310 - L1Md_F2 LINE L1 -765 5118 3868 4 2004 3790 55 4 0 chr1 186028109 186028579 -11166853 + L1Md_F2 LINE L1 5115 5586 -297 4 2004 8578 34 0 3 chr1 186028580 186029578 -11165854 + L1Md_F2 LINE L1 5588 6582 0 4 2004 269 251 16 22 chr1 186029723 186029823 -11165609 + MTEa LTR MaLR 278 379 0 4 2004 393 22 0 0 chr1 186029859 186029905 -11165527 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 4 2004 347 189 57 7 chr1 186029910 186030208 -11165224 + (TA)n Simple_repeat Simple_repeat 1 313 0 4 2004 8256 62 0 0 chr1 186030492 186031924 -11163508 - L1_Mus1 LINE L1 -4 6563 5133 4 2004 6065 113 25 38 chr1 186031924 186033614 -11161818 - L1_Mus1 LINE L1 -3774 2109 443 4 2004 482 157 0 11 chr1 186034031 186034121 -11161311 - RLTR15 LTR ERVK 0 359 271 5 2004 351 188 29 86 chr1 186034238 186034343 -11161089 + LTR40b LTR ERVL 345 443 -19 5 2004 264 320 143 17 chr1 186034465 186034640 -11160792 + MER58C DNA MER1_type 2 198 -17 5 2004 1266 118 16 0 chr1 186035506 186035692 -11159740 - B2_Mm2 SINE B2 -5 190 2 5 2004 447 257 70 21 chr1 186036157 186036300 -11159132 + B3A SINE B2 1 150 -48 5 2004 440 18 18 0 chr1 186036322 186036379 -11159053 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 2004 1261 301 209 16 chr1 186036391 186036999 -11158433 + Lx8 LINE L1 6559 7278 -195 5 2004 1816 197 7 93 chr1 186036999 186037408 -11158024 + ORR1D1 LTR MaLR 1 374 0 5 2004 1261 301 209 16 chr1 186037408 186037534 -11157898 + Lx8 LINE L1 7279 7435 -38 5 2004 438 94 0 0 chr1 186037599 186037663 -11157769 + (GGGA)n Simple_repeat Simple_repeat 3 66 0 5 2004 1786 110 51 114 chr1 186038799 186039149 -11156283 + ORR1A4 LTR MaLR 1 328 -1 5 2004 561 289 52 135 chr1 186039453 186039645 -11155787 - B3A SINE B2 -16 179 4 6 2004 457 317 92 65 chr1 186039956 186040402 -11155030 - MLT1C LTR MaLR -8 459 2 6 2004 336 267 18 62 chr1 186040494 186040606 -11154826 + PB1D10 SINE Alu 5 111 -6 6 2004 597 320 29 10 chr1 186040735 186040943 -11154489 + B4A SINE B4 8 219 -73 6 2004 517 262 50 63 chr1 186040957 186041116 -11154316 + RSINE1 SINE B4 5 161 -4 6 2004 192 293 53 0 chr1 186041334 186041409 -11154023 + L2a LINE L2 3279 3357 -69 6 2004 2113 127 15 20 chr1 186041690 186042214 -11153218 - RMER2 LTR ERV1 0 567 7 6 2004 230 196 71 0 chr1 186042229 186042285 -11153147 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 6 2004 22 70 0 0 chr1 186042500 186042543 -11152889 + AT_rich Low_complexity Low_complexity 1 43 0 6 2004 435 307 16 0 chr1 186042985 186043112 -11152320 + B1F SINE Alu 1 129 -20 6 2004 408 20 0 0 chr1 186043479 186043528 -11151904 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 2004 285 237 0 0 chr1 186043778 186043837 -11151595 - B4A SINE B4 -233 59 1 7 2004 1497 208 108 0 chr1 186044593 186044947 -11150485 - MTD LTR MaLR -20 399 27 7 2004 376 301 46 69 chr1 186045841 186046016 -11149416 + Tigger10 DNA Tigger 1247 1417 -426 7 2004 452 308 75 0 chr1 186047279 186047438 -11147994 + B4A SINE B4 28 198 -94 7 2004 225 226 0 0 chr1 186047590 186047643 -11147789 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 7 2004 408 304 36 0 chr1 186047677 186047815 -11147617 - MTE2b LTR MaLR -236 143 1 7 2004 282 269 93 58 chr1 186047976 186048166 -11147266 + MLT2B2 LTR ERVL 264 461 -140 7 2004 188 287 0 10 chr1 186048317 186048419 -11147013 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 2004 206 294 0 14 chr1 186048699 186048768 -11146664 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 2004 738 133 15 7 chr1 186050610 186050746 -11144686 - Lx9 LINE L1 -1 7643 7507 8 2004 222 37 0 0 chr1 186050749 186050776 -11144656 + (TATG)n Simple_repeat Simple_repeat 2 28 0 8 2004 462 49 0 0 chr1 186050782 186050843 -11144589 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 2004 695 220 34 155 chr1 186050946 186051262 -11144170 - Lx5 LINE L1 -46 7414 6796 8 2004 277 254 14 0 chr1 186051676 186051747 -11143685 + B4 SINE B4 12 83 -209 8 2004 388 265 128 8 chr1 186051912 186052045 -11143387 + MTEa LTR MaLR 174 322 -57 8 2004 250 281 74 52 chr1 186052382 186052517 -11142915 - MIRb SINE MIR -105 163 26 8 2004 245 261 0 0 chr1 186052846 186052911 -11142521 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 8 2004 2580 135 23 0 chr1 186052949 186053334 -11142098 + ORR1B1 LTR MaLR 1 394 0 8 2004 1254 95 0 0 chr1 186053756 186053935 -11141497 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 8 2004 1105 83 0 0 chr1 186053947 186054091 -11141341 - B1_Mus1 SINE Alu 0 148 5 9 2004 313 284 81 54 chr1 186054353 186054502 -11140930 + MER74C LTR ERVL 57 209 -251 9 2004 3685 200 92 32 chr1 186055549 186055835 -11139597 + Lx9 LINE L1 6704 6996 -648 9 2004 1213 42 0 0 chr1 186055835 186055977 -11139455 + B1_Mus2 SINE Alu 2 143 -4 9 2004 207 0 0 0 chr1 186055978 186056001 -11139431 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 9 2004 3685 200 92 32 chr1 186056001 186056594 -11138838 + Lx9 LINE L1 6997 7638 -6 9 2004 379 197 14 0 chr1 186058043 186058114 -11137318 + ID2 SINE ID 2 73 -10 9 2004 198 0 0 0 chr1 186058138 186058160 -11137272 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 9 2004 352 259 128 9 chr1 186058280 186058389 -11137043 - RSINE1 SINE B4 -28 137 16 9 2004 289 284 64 0 chr1 186058389 186058498 -11136934 + MLT2B1 LTR ERVL 114 229 -291 9 2004 376 123 27 0 chr1 186058544 186058617 -11136815 + CT-rich Low_complexity Low_complexity 5 79 0 9 2004 245 276 118 0 chr1 186058680 186058756 -11136676 + MLT2B1 LTR ERVL 382 466 -90 9 2004 405 0 0 0 chr1 186058761 186058806 -11136626 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 2004 188 353 52 0 chr1 186060308 186060424 -11135008 - MIRc SINE MIR -68 200 79 1 2004 672 207 50 211 chr1 186060622 186060940 -11134492 - B4 SINE B4 -5 287 21 1 2004 200 220 0 20 chr1 186061574 186061625 -11133807 + CT-rich Low_complexity Low_complexity 1 50 0 1 2004 378 0 0 0 chr1 186061739 186061781 -11133651 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 2004 402 287 91 11 chr1 186062562 186062738 -11132694 - ORR1E LTR MaLR -169 190 1 1 2004 240 326 82 48 chr1 186063189 186063395 -11132037 + B4 SINE B4 3 215 -77 1 2004 567 259 12 58 chr1 186063395 186063567 -11131865 + RSINE1 SINE B4 2 165 0 1 2004 285 29 0 0 chr1 186064332 186064366 -11131066 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 2004 24 32 0 0 chr1 186064661 186064692 -11130740 + AT_rich Low_complexity Low_complexity 1 31 0 1 2004 180 176 0 0 chr1 186064878 186064912 -11130520 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 2004 186 43 0 0 chr1 186065062 186065085 -11130347 + (T)n Simple_repeat Simple_repeat 1 23 0 1 2004 635 208 5 82 chr1 186065184 186065378 -11130054 + RLTR20B3 LTR ERVK 183 361 -216 1 2004 697 209 117 0 chr1 186067019 186067182 -11128250 - B3 SINE B2 0 216 35 1 2004 267 79 0 0 chr1 186067195 186067233 -11128199 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 2004 534 154 38 54 chr1 186067534 186067719 -11127713 + RMER17C LTR ERVK 91 272 -138 1 2004 975 88 35 0 chr1 186067724 186067894 -11127538 + (GA)n Simple_repeat Simple_repeat 2 177 0 1 2004 321 26 0 0 chr1 186067894 186067931 -11127501 + (GGAGA)n Simple_repeat Simple_repeat 1 38 0 1 2004 478 269 149 6 chr1 186069152 186069313 -11126119 + B3A SINE B2 4 187 -11 1 2004 23 33 0 0 chr1 186069475 186069505 -11125927 + AT_rich Low_complexity Low_complexity 1 30 0 1 2004 766 182 69 6 chr1 186070790 186070950 -11124482 + B3 SINE B2 47 216 0 1 2004 1015 274 70 43 chr1 186071215 186071790 -11123642 + L1MB2 LINE L1 4353 4942 -1198 1 2004 537 294 84 24 chr1 186071943 186072194 -11123238 + L1MB2 LINE L1 5731 5996 -175 1 2004 517 217 17 11 chr1 186072324 186072501 -11122931 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 2004 265 275 6 22 chr1 186072471 186072653 -11122779 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 2004 513 236 11 11 chr1 186072658 186072838 -11122594 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 2004 7123 82 31 14 chr1 186074177 186075195 -11120237 - Lx3_Mus LINE L1 0 7009 5974 1 2004 951 319 84 29 chr1 186075592 186076291 -11119141 + Charlie1a DNA MER1_type 511 1248 -207 1 2004 717 247 162 42 chr1 186076709 186076950 -11118482 - B4A SINE B4 -20 272 3 1 2004 293 182 90 11 chr1 186076969 186077058 -11118374 + Charlie1a DNA MER1_type 1304 1399 -56 1 2004 227 352 28 0 chr1 186077205 186077276 -11118156 + LTR16E2 LTR ERVL 485 557 -11 1 2004 2709 191 38 59 chr1 186077462 186078090 -11117342 + RLTR18 LTR ERVK 1 615 -1 1 2004 213 121 0 0 chr1 186078327 186078360 -11117072 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 1 2004 23 0 0 0 chr1 186080015 186080038 -11115394 + AT_rich Low_complexity Low_complexity 1 23 0 1 2004 277 273 39 48 chr1 186080116 186080220 -11115212 - B4 SINE B4 -86 206 104 1 2004 1219 41 7 0 chr1 186080758 186080904 -11114528 + B1_Mus1 SINE Alu 2 148 0 1 2004 515 275 8 28 chr1 186081335 186081536 -11113896 + B3A SINE B2 26 213 -3 1 2004 436 281 107 0 chr1 186081908 186082086 -11113346 - L1ME4a LINE L1 -187 5937 5741 1 2004 257 284 0 13 chr1 186082391 186082466 -11112966 + RSINE1 SINE B4 3 76 -89 1 2004 369 0 0 0 chr1 186082669 186082710 -11112722 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 2004 512 341 16 16 chr1 186083275 186083457 -11111975 - MTD LTR MaLR -235 184 3 1 2004 227 240 0 0 chr1 186084201 186084251 -11111181 + MIRb SINE MIR 211 260 -8 1 2004 2060 243 69 16 chr1 186086441 186087006 -11108426 - Lx2B LINE L1 -3 6997 6403 1 2004 823 202 43 16 chr1 186087006 186087192 -11108240 - B3A SINE B2 -7 191 1 1 2004 334 237 93 61 chr1 186087196 186087460 -11107972 - L1M4 LINE L1 -707 5472 5198 1 2004 630 270 78 67 chr1 186087466 186087757 -11107675 - MTE2b LTR MaLR -14 407 137 1 2004 370 188 97 19 chr1 186087754 186087857 -11107575 + RMER19B LTR ERVK 12 122 -780 1 2004 3094 145 84 50 chr1 186087826 186088479 -11106953 + RMER19B LTR ERVK 228 902 0 1 2004 295 291 8 60 chr1 186088479 186088596 -11106836 - MTE2b LTR MaLR -263 116 6 1 2004 255 331 52 23 chr1 186088601 186088774 -11106658 - L1MD LINE L1 -951 5195 5018 1 2004 475 234 72 30 chr1 186088834 186089001 -11106431 + MTEb LTR MaLR 198 371 -8 1 2004 423 0 0 0 chr1 186089144 186089191 -11106241 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 2004 504 244 49 82 chr1 186091425 186091608 -11103824 - B3A SINE B2 -21 177 1 1 2004 234 250 0 0 chr1 186092734 186092786 -11102646 - RSINE1 SINE B4 -17 148 97 1 2004 378 0 0 0 chr1 186092807 186092849 -11102583 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 2004 747 214 81 63 chr1 186093035 186093369 -11102063 - Lx9 LINE L1 -2 7642 7303 1 2004 579 296 101 50 chr1 186093560 186093838 -11101594 - Lx9 LINE L1 -405 7239 6948 1 2004 416 180 22 33 chr1 186093923 186094015 -11101417 + RMER5 LTR ERV1 399 489 -45 1 2004 738 176 0 0 chr1 186094322 186094458 -11100974 + URR1B DNA MER1_type 90 225 0 1 2004 732 281 78 4 chr1 186094674 186094942 -11100490 - B4A SINE B4 -3 289 2 1 2004 1106 108 0 5 chr1 186095698 186095903 -11099529 + (TTCC)n Simple_repeat Simple_repeat 1 203 0 1 2004 369 0 0 0 chr1 186095909 186095950 -11099482 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 2004 574 294 62 126 chr1 186096492 186096881 -11098551 + MTE2a LTR MaLR 1 364 -15 1 2004 227 312 99 59 chr1 186097057 186097278 -11098154 + ORR1E LTR MaLR 19 248 -111 1 2004 254 235 0 0 chr1 186097362 186097413 -11098019 + PB1D7 SINE Alu 66 116 -4 1 2004 263 28 28 0 chr1 186097413 186097449 -11097983 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1 2004 25 65 0 0 chr1 186097660 186097706 -11097726 + AT_rich Low_complexity Low_complexity 1 46 0 1 2004 425 280 80 7 chr1 186097752 186097903 -11097529 - B3A SINE B2 -35 163 2 1 2004 676 102 0 0 chr1 186098086 186098184 -11097248 + MTC LTR MaLR 1 98 -323 1 2004 951 56 0 0 chr1 186098193 186098319 -11097113 - B1_Mus1 SINE Alu -21 127 2 1 2004 1325 90 15 31 chr1 186098319 186098514 -11096918 - B2_Mm2 SINE B2 -3 192 1 1 2004 1310 149 106 11 chr1 186098572 186098836 -11096596 + MTC LTR MaLR 132 420 -1 1 2004 353 179 0 12 chr1 186099235 186099320 -11096112 + GA-rich Low_complexity Low_complexity 1 84 0 1 2004 192 77 0 0 chr1 186100759 186100785 -11094647 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 2004 497 274 166 50 chr1 186101024 186101343 -11094089 + ORR1E LTR MaLR 1 356 -3 1 2004 350 253 0 11 chr1 186101817 186101905 -11093527 - PB1D7 SINE Alu 0 120 34 1 2004 762 226 87 14 chr1 186101951 186102158 -11093274 - ID_B1 SINE B4 0 224 3 1 2004 192 135 0 0 chr1 186102688 186102725 -11092707 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 2004 522 0 0 0 chr1 186102729 186102787 -11092645 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 2004 306 314 25 8 chr1 186104461 186104580 -11090852 + CT-rich Low_complexity Low_complexity 4 124 0 1 2004 314 0 0 96 chr1 186104612 186104685 -11090747 + (TGGGGG)n Simple_repeat Simple_repeat 1 66 0 1 2004 303 243 102 48 chr1 186104931 186105078 -11090354 + MER46C DNA MER2_type 84 238 -100 1 2004 843 190 79 0 chr1 186106220 186106436 -11088996 + Lx9 LINE L1 7411 7643 -1 1 2004 266 240 25 8 chr1 186107283 186107292 -11088140 + (TG)n Simple_repeat Simple_repeat 2 10 0 1 2004 195 129 0 0 chr1 186107292 186107323 -11088109 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 2004 682 195 24 21 chr1 186107323 186107699 -11087733 + (TG)n Simple_repeat Simple_repeat 1 376 0 1 2004 589 259 103 106 chr1 186108349 186108794 -11086638 + L1MEc LINE L1 36 479 -5921 1 2004 298 277 23 105 chr1 186108817 186108832 -11086600 + MT2B LTR ERVL 155 158 -443 1 2004 643 269 7 0 chr1 186108832 186108977 -11086455 + B1_Mur1 SINE Alu 4 149 0 1 2004 402 276 66 15 chr1 186109039 186109175 -11086257 + B3A SINE B2 1 143 -55 1 2004 393 136 0 0 chr1 186109175 186109241 -11086191 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1 2004 236 276 45 22 chr1 186109241 186109330 -11086102 + B3 SINE B2 126 216 0 1 2004 359 275 128 60 chr1 186109894 186110192 -11085240 + L1MEc LINE L1 3012 3329 -2990 1 2004 395 271 78 37 chr1 186110630 186110892 -11084540 + L1_Rod LINE L1 5062 5400 -480 1 2004 244 329 68 0 chr1 186110914 186110987 -11084445 + RSINE1 SINE B4 47 124 -41 1 2004 263 308 21 21 chr1 186111012 186111023 -11084409 + B4 SINE B4 77 87 -205 1 2004 509 209 48 0 chr1 186111023 186111128 -11084304 + PB1D9 SINE Alu 2 111 -9 1 2004 256 206 14 87 chr1 186111161 186111230 -11084202 + L1M2 LINE L1 5510 5573 -727 1 2004 1192 309 66 47 chr1 186112016 186112593 -11082839 + L1MA4A LINE L1 5429 6016 -284 1 2004 230 174 0 42 chr1 186113030 186113078 -11082354 - MLT1G3 LTR MaLR -288 307 262 1 2004 323 276 105 0 chr1 186113492 186113597 -11081835 - PB1D10 SINE Alu -1 116 1 1 2004 320 202 369 0 chr1 186115497 186115581 -11079851 - PB1D7 SINE Alu -5 115 1 1 2004 998 270 18 110 chr1 186116012 186116412 -11079020 - MTE2a LTR MaLR 0 379 17 1 2004 1458 100 4 9 chr1 186116420 186116652 -11078780 + RMER16 LTR ERVK 303 533 0 1 2004 1166 69 0 0 chr1 186116754 186116899 -11078533 + B1_Mm SINE Alu 1 145 -2 1 2004 268 24 0 47 chr1 186116901 186116944 -11078488 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 2004 251 309 34 77 chr1 186117744 186117951 -11077481 - MIR SINE MIR -56 212 15 1 2004 423 257 9 9 chr1 186118233 186118343 -11077089 + PB1D10 SINE Alu 1 110 -7 1 2004 311 203 0 13 chr1 186118345 186118420 -11077012 + GA-rich Low_complexity Low_complexity 3 76 0 2 2004 353 0 0 66 chr1 186119157 186119218 -11076214 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 2 2004 1064 65 0 7 chr1 186119219 186119358 -11076074 - B1_Mus2 SINE Alu -9 138 1 2 2004 2772 71 18 2 chr1 186119358 186119754 -11075678 - MTB_Mm LTR MaLR -5 402 1 2 2004 2300 267 107 12 chr1 186119787 186120672 -11074760 + RCHARR1 DNA MER1_type 1 969 -5 2 2005 471 162 43 18 chr1 186122561 186122724 -11072708 + CT-rich Low_complexity Low_complexity 4 170 0 2 2005 435 270 203 17 chr1 186122735 186122912 -11072520 - ID_B1 SINE B4 -13 211 2 2 2005 293 272 73 42 chr1 186122984 186123080 -11072352 + BC1_Mm scRNA scRNA 1 99 -53 2 2005 358 335 72 30 chr1 186126817 186127082 -11068350 + B4 SINE B4 3 278 -14 2 2005 245 213 16 32 chr1 186127105 186127168 -11068264 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 2005 3002 157 36 20 chr1 186130056 186130608 -11064824 + RLTR31_Mm LTR ERVK 1 561 0 2 2005 988 261 24 4 chr1 186130636 186130890 -11064542 - B4A SINE B4 -28 264 6 2 2005 377 220 0 35 chr1 186131259 186131344 -11064088 + B4A SINE B4 203 284 -8 2 2005 204 256 0 0 chr1 186131386 186131472 -11063960 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 2005 582 279 78 59 chr1 186132341 186132714 -11062718 + RMER13A LTR ERVK 1 380 -480 2 2005 309 329 116 22 chr1 186133442 186133666 -11061766 - MTEa LTR MaLR -129 250 6 2 2005 427 334 98 62 chr1 186134003 186134084 -11061348 + L1MDb LINE L1 5 87 -6322 2 2005 3092 66 143 5 chr1 186134084 186134525 -11060907 - RLTR44C LTR ERVK 0 502 1 2 2005 427 334 98 62 chr1 186134525 186134963 -11060469 + L1MDb LINE L1 88 543 -5866 2 2005 246 298 89 42 chr1 186135272 186135440 -11059992 + L1MDb LINE L1 840 1015 -5394 2 2005 1001 275 52 97 chr1 186135447 186135870 -11059562 + MTD LTR MaLR 1 404 -15 2 2005 226 276 86 8 chr1 186135891 186136008 -11059424 + L1MDb LINE L1 1036 1161 -5248 2 2005 693 149 0 0 chr1 186136013 186136120 -11059312 + B1_Mur1 SINE Alu 5 111 -38 2 2005 231 250 96 40 chr1 186136305 186136430 -11059002 + L1MDb LINE L1 4173 4304 -2102 2 2005 950 246 72 62 chr1 186136529 186136833 -11058599 + ORR1E LTR MaLR 53 359 0 2 2005 461 259 6 80 chr1 186136958 186137134 -11058298 + RSINE1 SINE B4 2 164 -1 2 2005 34 42 0 0 chr1 186137139 186137187 -11058245 + AT_rich Low_complexity Low_complexity 1 48 0 2 2005 1320 74 0 0 chr1 186137245 186137421 -11058011 + L1_Mus1 LINE L1 6392 6567 0 2 2005 348 269 81 29 chr1 186137728 186137900 -11057532 + L1MD LINE L1 4549 4729 -1417 2 2005 253 296 80 0 chr1 186137956 186138044 -11057388 + RSINE1 SINE B4 2 96 -69 2 2005 317 162 0 14 chr1 186139232 186139301 -11056131 + GA-rich Low_complexity Low_complexity 2 69 0 2 2005 278 262 151 0 chr1 186140489 186140615 -11054817 + L1M3 LINE L1 5320 5464 -716 2 2005 358 277 98 24 chr1 186140653 186140921 -11054511 + L1ME1 LINE L1 5712 6006 -173 2 2005 495 343 29 25 chr1 186141033 186141275 -11054157 + B4A SINE B4 50 292 0 2 2005 600 268 40 35 chr1 186141535 186141736 -11053696 + MLT1A0 LTR MaLR 19 220 -145 2 2005 354 244 22 37 chr1 186142596 186142732 -11052700 + MER121 Unknown Unknown 107 240 -172 2 2005 1553 210 26 20 chr1 186143034 186143399 -11052033 + ORR1D1 LTR MaLR 2 410 -9 2 2005 366 359 48 5 chr1 186144019 186144226 -11051206 - MIRc SINE MIR -37 231 16 2 2005 566 277 18 49 chr1 186146664 186146827 -11048605 - RSINE1 SINE B4 -1 164 7 2 2005 544 344 46 18 chr1 186147763 186148047 -11047385 + B4 SINE B4 1 292 0 2 2005 2139 282 91 23 chr1 186148169 186149349 -11046083 + Lx8 LINE L1 5394 6684 -789 2 2005 627 254 193 0 chr1 186149348 186149576 -11045856 + Lx8 LINE L1 7172 7443 -30 2 2005 483 250 37 29 chr1 186149638 186149774 -11045658 + B1_Mur2 SINE Alu 6 142 -7 2 2005 531 45 0 0 chr1 186150607 186150673 -11044759 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 2005 297 0 0 0 chr1 186150705 186150738 -11044694 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 2005 269 361 57 38 chr1 186151145 186151355 -11044077 - MIRb SINE MIR -38 230 17 2 2005 229 293 0 26 chr1 186153851 186153928 -11041504 + B3 SINE B2 7 81 -135 2 2005 348 202 0 62 chr1 186153928 186154189 -11041243 + (CA)n Simple_repeat Simple_repeat 1 244 0 2 2005 256 177 0 0 chr1 186154194 186154256 -11041176 + B3 SINE B2 154 215 -1 2 2005 1271 97 0 56 chr1 186156067 186156264 -11039168 - B2_Mm2 SINE B2 -9 186 1 2 2005 566 319 61 10 chr1 186156275 186156570 -11038862 - L1MB2 LINE L1 -3 6168 5859 2 2005 755 304 116 34 chr1 186156850 186157647 -11037785 - L1M4c LINE L1 -4543 2110 1251 2 2005 479 60 0 15 chr1 186159690 186159758 -11035674 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 2005 638 333 38 23 chr1 186159760 186160024 -11035408 - B4 SINE B4 -23 269 2 2 2005 629 185 5 0 chr1 186160950 186161170 -11034262 + (TG)n Simple_repeat Simple_repeat 1 221 0 2 2005 323 268 0 18 chr1 186161277 186161391 -11034041 + GA-rich Low_complexity Low_complexity 1 112 0 2 2005 1000 136 0 11 chr1 186161413 186161591 -11033841 + (GAA)n Simple_repeat Simple_repeat 1 176 0 2 2005 1085 80 0 0 chr1 186161750 186161887 -11033545 + B1_Mus2 SINE Alu 5 141 -6 2 2005 627 22 11 22 chr1 186161889 186161980 -11033452 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 2005 1328 52 6 0 chr1 186163291 186163464 -11031968 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 2 2005 315 0 0 0 chr1 186164132 186164167 -11031265 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 2005 573 105 0 0 chr1 186165418 186165504 -11029928 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 2005 396 0 0 0 chr1 186166152 186166196 -11029236 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 2005 628 219 87 53 chr1 186166250 186166457 -11028975 - B3 SINE B2 -2 214 1 2 2005 283 325 87 7 chr1 186166974 186167207 -11028225 + B4A SINE B4 3 287 -5 2 2005 367 352 125 47 chr1 186167573 186167957 -11027475 - LTR16A LTR ERVL -4 447 34 2 2005 722 246 16 22 chr1 186168171 186168354 -11027078 + B3A SINE B2 1 182 -16 2 2005 1284 56 0 0 chr1 186169031 186169209 -11026223 + (TC)n Simple_repeat Simple_repeat 2 179 0 2 2005 752 256 70 40 chr1 186169923 186170151 -11025281 - ORR1D2 LTR MaLR 0 370 136 2 2005 7977 84 18 2 chr1 186170169 186171555 -11023877 - L1_Mus3 LINE L1 -1 6637 5237 2 2005 718 252 0 0 chr1 186171560 186171707 -11023725 - ORR1D2 LTR MaLR -221 149 3 2 2005 468 0 0 0 chr1 186171872 186171924 -11023508 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 2005 244 336 59 16 chr1 186172279 186172507 -11022925 + L1M4 LINE L1 4976 5221 -925 2 2005 751 187 6 6 chr1 186173255 186173432 -11022000 + (CATA)n Simple_repeat Simple_repeat 3 179 0 2 2005 286 227 9 18 chr1 186173463 186173575 -11021857 + (CATA)n Simple_repeat Simple_repeat 4 114 0 2 2005 342 322 68 86 chr1 186173598 186173819 -11021613 - Charlie1b DNA MER1_type -277 246 30 2 2005 390 327 26 0 chr1 186173908 186174021 -11021411 - PB1D10 SINE Alu -1 116 1 2 2005 237 65 0 0 chr1 186174058 186174089 -11021343 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2 2005 258 32 0 0 chr1 186174912 186174943 -11020489 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2 2005 262 100 33 0 chr1 186175564 186175624 -11019808 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 2 2005 292 250 0 35 chr1 186178797 186178884 -11016548 + CT-rich Low_complexity Low_complexity 4 87 0 2 2005 213 211 0 0 chr1 186179890 186179942 -11015490 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 2005 704 278 61 9 chr1 186179995 186180224 -11015208 - B4A SINE B4 -48 244 4 2 2005 468 0 0 0 chr1 186181465 186181517 -11013915 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 2005 321 304 159 45 chr1 186182991 186183167 -11012265 - B3A SINE B2 -1 197 2 2 2005 725 320 32 11 chr1 186183426 186183707 -11011725 + B4A SINE B4 5 291 -1 2 2005 357 176 0 0 chr1 186183708 186183782 -11011650 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 2005 388 233 10 10 chr1 186184094 186184198 -11011234 + L1MB4 LINE L1 6076 6179 -1 2 2005 271 257 119 0 chr1 186185186 186185295 -11010137 + L1MA4 LINE L1 5783 5904 -396 2 2005 259 200 0 0 chr1 186185624 186185674 -11009758 + ID4 SINE ID 1 50 -33 2 2005 189 0 0 0 chr1 186185681 186185702 -11009730 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 2 2005 231 279 0 16 chr1 186186096 186186158 -11009274 + CT-rich Low_complexity Low_complexity 3 63 0 2 2005 279 0 0 0 chr1 186186779 186186810 -11008622 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 2005 351 0 0 0 chr1 186186850 186186889 -11008543 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 2005 279 299 27 20 chr1 186186904 186187051 -11008381 - L1_Mur3 LINE L1 -1912 3968 3821 2 2005 593 327 131 39 chr1 186187369 186187836 -11007596 + MER45B DNA Tip100 2 511 -529 2 2005 617 158 100 17 chr1 186188026 186188158 -11007274 + B3A SINE B2 3 143 -55 2 2005 387 0 0 0 chr1 186188158 186188201 -11007231 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 2005 285 264 85 130 chr1 186188201 186188268 -11007164 + B2_Mm1t SINE B2 130 193 0 2 2005 197 222 0 16 chr1 186188707 186188771 -11006661 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 2005 225 242 176 0 chr1 186189003 186189094 -11006338 + MER45R DNA Tip100 1 107 -1474 2 2005 334 181 41 14 chr1 186189142 186189215 -11006217 + ORR1D2 LTR MaLR 1 75 -295 2 2005 2477 64 3 63 chr1 186189243 186189591 -11005841 - ORR1A2 LTR MaLR 0 327 1 2 2005 554 299 104 5 chr1 186189733 186189925 -11005507 - ID_B1 SINE B4 -9 215 5 2 2005 668 292 71 57 chr1 186190663 186190946 -11004486 + B4 SINE B4 6 292 0 2 2005 637 178 7 65 chr1 186190958 186191096 -11004336 - ORR1D2 LTR MaLR -3 367 238 2 2005 2671 132 9 16 chr1 186191103 186191526 -11003906 - L1_Mm LINE L1 -163 5720 5301 2 2005 2241 161 0 0 chr1 186191525 186191891 -11003541 + L1_Mur2 LINE L1 4879 5244 -633 2 2005 1583 151 66 3 chr1 186191891 186192177 -11003255 - RLTR25A LTR ERVK -401 702 399 3 2005 1090 71 43 0 chr1 186192210 186192351 -11003081 - B1_Mus2 SINE Alu 0 147 1 3 2005 377 208 14 0 chr1 186192357 186192429 -11003003 - RLTR25A LTR ERVK -953 75 3 3 2005 3224 29 3 3 chr1 186193086 186193466 -11001966 - L1Md_F2 LINE L1 0 6582 6203 3 2005 248 321 64 7 chr1 186193533 186193674 -11001758 - L1M5 LINE L1 -2352 3794 3646 3 2005 7435 44 1 1 chr1 186193685 186194570 -11000862 - L1Md_F2 LINE L1 -12 6570 5686 3 2005 332 291 100 23 chr1 186194591 186194721 -11000711 + B4A SINE B4 1 140 -152 3 2005 350 271 109 29 chr1 186194989 186195126 -11000306 + B1F SINE Alu 1 148 -1 3 2005 200 111 22 0 chr1 186195188 186195233 -11000199 + (CTA)n Simple_repeat Simple_repeat 1 46 0 3 2005 378 248 35 45 chr1 186195998 186196110 -10999322 - B3A SINE B2 -2 196 98 3 2005 3811 108 45 0 chr1 186196154 186196728 -10998704 - L1_Mus3 LINE L1 -7 6631 6032 3 2005 407 321 0 0 chr1 186196728 186196834 -10998598 - B3A SINE B2 -92 106 1 3 2005 233 262 54 14 chr1 186197369 186197480 -10997952 + L2c LINE L2 3269 3408 -18 3 2005 37 33 0 16 chr1 186197825 186197840 -10997592 + AT_rich Low_complexity Low_complexity 1 15 0 3 2005 704 286 39 39 chr1 186197840 186198047 -10997385 + B3 SINE B2 1 207 -9 3 2005 37 33 0 16 chr1 186198047 186198093 -10997339 + AT_rich Low_complexity Low_complexity 1 46 0 3 2005 981 175 84 37 chr1 186198386 186198600 -10996832 + URR1B DNA MER1_type 1 224 -1 3 2005 275 71 24 0 chr1 186198618 186198660 -10996772 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 2005 1166 29 7 0 chr1 186198660 186198797 -10996635 - B1_Mus2 SINE Alu -9 138 1 3 2005 853 299 122 19 chr1 186199423 186199785 -10995647 + MTD LTR MaLR 21 419 0 3 2005 2371 108 9 0 chr1 186199787 186200111 -10995321 - ORR1A2 LTR MaLR 0 327 1 3 2005 277 225 42 48 chr1 186202947 186202980 -10992452 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 3 2005 434 0 54 0 chr1 186202980 186203036 -10992396 + (ATTAG)n Simple_repeat Simple_repeat 4 62 0 3 2005 277 225 42 48 chr1 186203036 186203137 -10992295 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 3 2005 180 0 0 0 chr1 186203137 186203157 -10992275 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 3 2005 277 225 42 48 chr1 186203157 186203189 -10992243 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 3 2005 798 80 27 49 chr1 186203244 186203428 -10992004 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 2005 277 347 41 23 chr1 186203528 186203699 -10991733 - L2c LINE L2 -235 3152 2979 3 2005 450 0 0 0 chr1 186204838 186204888 -10990544 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 2005 211 114 45 0 chr1 186204934 186204978 -10990454 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 2005 623 126 8 0 chr1 186205012 186205139 -10990293 + (CATA)n Simple_repeat Simple_repeat 2 129 0 3 2005 213 154 0 0 chr1 186205177 186205216 -10990216 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 2005 272 297 14 28 chr1 186205252 186205351 -10990081 + (CATA)n Simple_repeat Simple_repeat 4 100 0 3 2005 243 0 0 0 chr1 186205351 186205378 -10990054 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 2005 272 297 14 28 chr1 186205378 186205420 -10990012 + (CATA)n Simple_repeat Simple_repeat 1 42 0 3 2005 1601 209 85 22 chr1 186205817 186206227 -10989205 + Lx8 LINE L1 7036 7471 -2 3 2005 447 277 7 28 chr1 186206284 186206429 -10989003 + Lx8 LINE L1 6879 7020 -453 3 2005 1579 155 8 115 chr1 186207082 186207439 -10987993 + ORR1A4 LTR MaLR 1 319 -10 3 2005 1032 237 180 10 chr1 186207698 186208009 -10987423 - MTD LTR MaLR -55 364 1 3 2005 565 283 102 29 chr1 186210251 186210495 -10984937 + B4A SINE B4 3 264 -28 3 2005 1088 117 27 37 chr1 186210955 186211142 -10984290 + B2_Mm2 SINE B2 2 186 -9 3 2005 384 103 0 0 chr1 186211771 186211829 -10983603 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 3 2005 656 269 36 0 chr1 186212831 186212998 -10982434 + B3A SINE B2 1 173 -25 3 2005 189 0 0 0 chr1 186213000 186213021 -10982411 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 2005 872 64 23 39 chr1 186213723 186213982 -10981450 + (TCTA)n Simple_repeat Simple_repeat 1 254 0 3 2005 922 292 33 60 chr1 186214116 186214481 -10980951 + ORR1E LTR MaLR 5 359 0 3 2005 584 176 92 71 chr1 186214531 186214672 -10980760 + B1_Mus2 SINE Alu 3 146 -1 3 2005 680 287 87 72 chr1 186214922 186215380 -10980052 + RLTR11A2 LTR ERVK 1 465 -62 3 2005 227 319 32 11 chr1 186215533 186215628 -10979804 - MIRm SINE MIR -121 155 59 3 2005 243 133 0 0 chr1 186216279 186216324 -10979108 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 2005 210 219 0 0 chr1 186216324 186216388 -10979044 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 2005 844 257 119 15 chr1 186216414 186216675 -10978757 - B4 SINE B4 -3 289 2 3 2005 246 32 0 0 chr1 186216933 186216964 -10978468 + (A)n Simple_repeat Simple_repeat 1 31 0 3 2005 209 0 97 0 chr1 186217005 186217036 -10978396 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 2005 288 0 0 0 chr1 186217411 186217443 -10977989 + (A)n Simple_repeat Simple_repeat 1 32 0 3 2005 295 341 79 0 chr1 186217481 186217607 -10977825 + MTE2a LTR MaLR 2 137 -242 3 2005 807 312 61 15 chr1 186217544 186217873 -10977559 + MT2A LTR ERVL 75 418 -115 3 2005 462 302 57 89 chr1 186219502 186219873 -10975559 - ORR1E LTR MaLR 0 359 1 3 2005 202 328 120 26 chr1 186220039 186220230 -10975202 + L2 LINE L2 2551 2759 -660 3 2005 608 291 25 22 chr1 186220406 186220657 -10974775 - MTEa LTR MaLR -15 364 99 3 2005 189 107 0 0 chr1 186220693 186220721 -10974711 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 3 2005 220 299 63 63 chr1 186220732 186220907 -10974525 - B2_Mm2 SINE B2 -9 186 12 3 2005 471 261 20 60 chr1 186220776 186220927 -10974505 - RSINE1 SINE B4 -19 146 2 3 2005 400 276 19 0 chr1 186220945 186221050 -10974382 - Lx8 LINE L1 -138 7335 7229 3 2005 1047 38 0 0 chr1 186221555 186221687 -10973745 + (TG)n Simple_repeat Simple_repeat 2 133 0 3 2005 315 191 0 0 chr1 186221693 186221756 -10973676 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 2005 360 0 0 0 chr1 186222037 186222077 -10973355 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 2005 424 312 18 18 chr1 186223031 186223194 -10972238 + MER121 Unknown Unknown 85 247 -165 3 2005 360 271 24 0 chr1 186223506 186223591 -10971841 + B1F2 SINE Alu 19 105 -44 3 2005 219 351 89 9 chr1 186223591 186223618 -10971814 + ID_B1 SINE B4 100 220 -4 3 2005 672 231 41 20 chr1 186223629 186223775 -10971657 - B1_Mur1 SINE Alu 0 149 1 3 2005 282 185 37 0 chr1 186223812 186223893 -10971539 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 2005 1156 124 38 0 chr1 186224395 186224550 -10970882 + B2_Mm2 SINE B2 1 155 -40 3 2005 509 0 0 16 chr1 186224550 186224612 -10970820 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 3 2005 1156 124 38 0 chr1 186224612 186224642 -10970790 + B2_Mm2 SINE B2 156 192 -3 3 2005 412 282 45 78 chr1 186225125 186225279 -10970153 + B4A SINE B4 3 151 -141 3 2005 297 75 0 0 chr1 186225393 186225433 -10969999 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 2005 24 0 0 0 chr1 186225584 186225608 -10969824 + AT_rich Low_complexity Low_complexity 1 24 0 3 2005 438 20 0 0 chr1 186227593 186227644 -10967788 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 2005 441 145 0 0 chr1 186227870 186227946 -10967486 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 2005 1411 218 44 33 chr1 186228000 186228366 -10967066 + ORR1D2 LTR MaLR 1 370 0 3 2005 252 269 0 15 chr1 186229015 186229083 -10966349 + Charlie2b DNA MER1_type 502 568 -2214 3 2005 373 247 30 20 chr1 186229094 186229193 -10966239 + PB1D10 SINE Alu 16 115 -2 3 2005 1148 267 31 133 chr1 186229405 186230045 -10965387 - Lx8 LINE L1 -29 7444 6870 3 2005 227 186 68 0 chr1 186230645 186230704 -10964728 + Charlie2b DNA MER1_type 2410 2472 -310 3 2005 783 129 0 165 chr1 186230704 186230880 -10964552 + B1_Mus2 SINE Alu 1 147 0 3 2005 23 0 0 0 chr1 186231552 186231575 -10963857 + AT_rich Low_complexity Low_complexity 1 23 0 3 2005 561 183 139 0 chr1 186231577 186231692 -10963740 + B3 SINE B2 1 131 -85 3 2005 396 0 0 0 chr1 186231725 186231769 -10963663 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 2005 1775 201 6 6 chr1 186231811 186232152 -10963280 + MTC LTR MaLR 1 341 -80 3 2005 420 247 0 43 chr1 186232191 186232377 -10963055 + (ATGTG)n Simple_repeat Simple_repeat 1 178 0 3 2005 532 186 20 0 chr1 186232380 186232482 -10962950 + MTC LTR MaLR 318 421 0 3 2005 1674 186 8 41 chr1 186232561 186232925 -10962507 - ORR1B1 LTR MaLR 0 394 43 3 2005 274 240 82 20 chr1 186232932 186233030 -10962402 + L1MB3 LINE L1 6018 6121 -62 3 2005 377 258 48 0 chr1 186233052 186233219 -10962213 + (ATATG)n Simple_repeat Simple_repeat 5 179 0 3 2005 312 236 55 0 chr1 186233306 186233433 -10961999 + (ATATG)n Simple_repeat Simple_repeat 5 138 0 3 2005 471 218 28 28 chr1 186234732 186234953 -10960479 + (CAGA)n Simple_repeat Simple_repeat 1 221 0 3 2005 315 0 0 0 chr1 186234974 186235009 -10960423 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2005 301 98 0 62 chr1 186235011 186235076 -10960356 + GA-rich Low_complexity Low_complexity 2 62 0 3 2005 316 367 0 6 chr1 186235637 186235818 -10959614 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 2005 445 320 0 0 chr1 186235845 186236097 -10959335 + (TG)n Simple_repeat Simple_repeat 1 252 0 3 2005 219 69 0 0 chr1 186236097 186236126 -10959306 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 2005 277 280 29 20 chr1 186236351 186236453 -10958979 + GA-rich Low_complexity Low_complexity 5 107 0 3 2005 22 0 0 0 chr1 186237724 186237746 -10957686 + AT_rich Low_complexity Low_complexity 1 22 0 3 2005 247 299 0 65 chr1 186237884 186237977 -10957455 - MLT1A1 LTR MaLR -12 396 310 3 2005 360 287 91 70 chr1 186238951 186239138 -10956294 + B3A SINE B2 1 191 -7 3 2005 259 307 0 79 chr1 186239492 186239644 -10955788 + B1F SINE Alu 2 141 -8 3 2005 497 304 0 20 chr1 186239649 186239783 -10955649 + B3A SINE B2 15 148 -50 3 2005 1047 112 0 0 chr1 186239783 186239999 -10955433 + (CA)n Simple_repeat Simple_repeat 1 216 0 4 2005 497 304 0 20 chr1 186239999 186240010 -10955422 + B3A SINE B2 149 159 -39 3 2005 414 241 116 0 chr1 186240023 186240135 -10955297 + Lx9 LINE L1 6599 6723 -921 4 2005 554 260 0 38 chr1 186240164 186240296 -10955136 + B1_Mur2 SINE Alu 10 136 -13 4 2005 594 0 0 0 chr1 186240296 186240362 -10955070 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 2005 645 297 59 17 chr1 186240365 186240601 -10954831 + Lx9 LINE L1 6729 6974 -670 4 2005 4862 143 139 7 chr1 186240595 186241475 -10953957 - L1_Mur2 LINE L1 -313 5564 4569 4 2005 770 237 55 72 chr1 186241495 186241731 -10953701 + Lx2B LINE L1 6756 6987 -13 4 2005 323 44 22 0 chr1 186241739 186241784 -10953648 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 2005 187 173 0 37 chr1 186242192 186242246 -10953186 + CT-rich Low_complexity Low_complexity 4 55 0 4 2005 396 179 0 0 chr1 186243215 186243327 -10952105 + CT-rich Low_complexity Low_complexity 1 112 0 4 2005 567 0 0 0 chr1 186243360 186243423 -10952009 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 2005 1089 73 18 0 chr1 186243919 186244084 -10951348 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 4 2005 198 103 0 0 chr1 186244654 186244683 -10950749 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 4 2005 218 265 24 12 chr1 186245006 186245090 -10950342 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 2005 3452 312 52 14 chr1 186245104 186246351 -10949081 + Lx8 LINE L1 6168 7462 -11 4 2005 2566 189 30 121 chr1 186246374 186247046 -10948386 + RMER19C LTR ERVK 1 611 0 4 2005 641 347 23 27 chr1 186247648 186247906 -10947526 - B4A SINE B4 0 292 36 4 2005 478 252 19 0 chr1 186250007 186250114 -10945318 + PB1D10 SINE Alu 1 109 -8 4 2005 239 215 15 0 chr1 186250127 186250192 -10945240 + GA-rich Low_complexity Low_complexity 1 66 0 4 2005 274 299 12 100 chr1 186250496 186250656 -10944776 + B1F1 SINE Alu 3 148 -1 4 2005 293 310 37 0 chr1 186250660 186250783 -10944649 + BC1_Mm scRNA scRNA 1 127 -25 4 2005 348 281 138 22 chr1 186251140 186251278 -10944154 + ID_B1 SINE B4 4 157 -67 4 2005 600 184 0 19 chr1 186252205 186252360 -10943072 + (CA)n Simple_repeat Simple_repeat 2 153 0 4 2005 599 121 10 0 chr1 186252399 186252498 -10942934 + (TC)n Simple_repeat Simple_repeat 1 100 0 4 250 528 81 0 0 chr1 186253270 186253344 -10942088 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 4 2006 2279 121 16 78 chr1 186253344 186253767 -10941665 - RMER10B LTR ERVL -1 397 1 4 2006 647 105 40 28 chr1 186253806 186253982 -10941450 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 4 2006 468 0 0 0 chr1 186254079 186254131 -10941301 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 2006 450 53 0 0 chr1 186254836 186254893 -10940539 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 2006 799 234 77 20 chr1 186255683 186255931 -10939501 + L1MA9 LINE L1 5560 5821 -479 4 2006 1271 28 0 0 chr1 186255978 186256123 -10939309 + B1_Mm SINE Alu 1 145 -2 4 2006 717 45 0 0 chr1 186256123 186256212 -10939220 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 4 2006 8167 56 2 0 chr1 186256216 186257214 -10938218 + L1_Mm LINE L1 4587 5586 -297 4 2006 7995 47 14 9 chr1 186257214 186258205 -10937227 + L1Md_F2 LINE L1 5587 6582 0 4 2006 490 291 86 37 chr1 186258229 186258554 -10936878 + L1MA9 LINE L1 5844 6184 -128 4 2006 582 298 112 45 chr1 186258680 186259098 -10936334 + Lx9 LINE L1 7196 7641 -3 4 2006 249 326 119 15 chr1 186260196 186260330 -10935102 - ORR1E LTR MaLR -210 149 2 4 2006 200 111 22 0 chr1 186262165 186262210 -10933222 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 2006 1149 88 0 0 chr1 186262210 186262357 -10933075 - B1_Mus2 SINE Alu 0 147 1 4 2006 391 269 55 33 chr1 186262601 186262809 -10932623 - ERVL-B4-int LTR ERVL -1462 4023 3769 4 2006 712 190 0 27 chr1 186263852 186264036 -10931396 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 2006 853 209 244 4 chr1 186264068 186264318 -10931114 + MTD LTR MaLR 110 419 0 4 2006 649 271 26 63 chr1 186265967 186266156 -10929276 - B3A SINE B2 -16 182 1 4 2006 242 348 26 9 chr1 186267978 186268091 -10927341 - MLT1F2 LTR MaLR -146 414 300 4 2006 313 341 72 7 chr1 186268256 186268395 -10927037 + MER2 DNA MER2_type 24 171 -174 4 2006 565 277 113 0 chr1 186268499 186268658 -10926774 + B3A SINE B2 6 182 -16 4 2006 318 229 44 103 chr1 186268654 186268790 -10926642 + MER2 DNA MER2_type 160 287 -58 4 2006 357 93 0 0 chr1 186269289 186269343 -10926089 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 2006 375 245 0 41 chr1 186269551 186269649 -10925783 - ID_B1 SINE B4 -13 211 118 4 2006 213 258 45 61 chr1 186269709 186269775 -10925657 - B1F SINE Alu -7 142 78 4 2006 1902 246 99 6 chr1 186269911 186270414 -10925018 + Lx7 LINE L1 6757 7306 -390 4 2006 402 21 0 0 chr1 186270420 186270467 -10924965 + (TGG)n Simple_repeat Simple_repeat 1 47 0 4 2006 351 0 0 0 chr1 186270467 186270506 -10924926 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 2006 450 0 0 0 chr1 186270585 186270635 -10924797 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 2006 603 104 28 0 chr1 186271585 186271691 -10923741 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 2006 186 222 54 36 chr1 186272286 186272342 -10923090 - MIRc SINE MIR -130 138 82 4 2006 393 212 12 0 chr1 186272454 186272534 -10922898 - PB1D10 SINE Alu -28 89 9 4 2006 180 0 0 0 chr1 186273374 186273394 -10922038 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 4 2006 772 121 8 8 chr1 186273773 186273906 -10921526 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 4 2006 216 0 0 0 chr1 186273922 186273946 -10921486 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 2006 479 222 118 41 chr1 186273957 186274126 -10921306 - B3 SINE B2 -32 184 3 4 2006 576 306 33 19 chr1 186274155 186274368 -10921064 - ID_B1 SINE B4 -1 223 8 4 2006 382 284 9 18 chr1 186275370 186275491 -10919941 - B1F SINE Alu 0 120 10 4 2006 217 358 45 9 chr1 186275395 186275505 -10919927 - B4A SINE B4 -98 194 81 4 2006 492 318 6 34 chr1 186275848 186276024 -10919408 + B3A SINE B2 2 172 -26 4 2006 231 204 0 0 chr1 186276030 186276079 -10919353 + (CACG)n Simple_repeat Simple_repeat 3 51 0 4 2006 626 286 31 5 chr1 186276853 186277046 -10918386 - B3A SINE B2 0 198 1 4 2006 596 281 94 17 chr1 186277097 186277278 -10918154 - ID_B1 SINE B4 -29 195 1 4 2006 428 300 65 0 chr1 186277451 186277621 -10917811 - MER63D DNA AcHobo -853 208 28 4 2006 249 33 0 0 chr1 186278247 186278277 -10917155 + (A)n Simple_repeat Simple_repeat 1 30 0 4 2006 395 315 0 23 chr1 186278470 186278603 -10916829 + MER5B DNA MER1_type 49 178 0 4 2006 276 146 18 18 chr1 186278713 186278769 -10916663 + MER5A1 DNA MER1_type 46 101 -65 4 2006 414 0 0 0 chr1 186278773 186278819 -10916613 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 2006 815 223 124 28 chr1 186278832 186279081 -10916351 - B4 SINE B4 -4 288 16 4 2006 612 314 27 31 chr1 186279455 186279711 -10915721 + B4A SINE B4 2 256 -36 4 2006 1514 253 30 56 chr1 186280568 186281032 -10914400 + Lx7 LINE L1 6141 6592 -1104 4 2006 334 196 65 7 chr1 186281137 186281276 -10914156 + (TA)n Simple_repeat Simple_repeat 2 148 0 4 2006 378 218 115 0 chr1 186281279 186281366 -10914066 - L1MA5 LINE L1 -27 6273 6177 4 2006 257 279 60 87 chr1 186281574 186281723 -10913709 - LTR16A LTR ERVL -15 436 292 4 2006 632 107 0 10 chr1 186281791 186281895 -10913537 + (TCCC)n Simple_repeat Simple_repeat 4 106 0 4 2006 494 210 84 0 chr1 186281904 186282047 -10913385 - Lx9 LINE L1 -9 7635 7481 4 2006 211 301 21 0 chr1 186282574 186282667 -10912765 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 2006 225 154 0 0 chr1 186283161 186283200 -10912232 + CT-rich Low_complexity Low_complexity 2 40 0 4 2006 243 0 0 0 chr1 186283497 186283524 -10911908 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 2006 1164 62 0 0 chr1 186283524 186283669 -10911763 - B1_Mus2 SINE Alu -2 145 1 4 2006 229 367 35 0 chr1 186283682 186283851 -10911581 + L1MD LINE L1 3922 4096 -2050 4 2006 378 0 0 0 chr1 186284402 186284444 -10910988 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 2006 963 219 71 0 chr1 186284727 186284937 -10910495 - URR1B DNA MER1_type 0 225 1 4 2006 412 296 58 53 chr1 186285258 186285447 -10909985 + ORR1E LTR MaLR 1 190 -169 4 2006 300 257 0 14 chr1 186285465 186285536 -10909896 + ORR1E LTR MaLR 246 315 -64 4 2006 217 156 89 0 chr1 186285540 186285585 -10909847 + PB1D10 SINE Alu 62 110 -7 4 2006 204 40 0 0 chr1 186285613 186285638 -10909794 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 4 2006 579 29 0 0 chr1 186285638 186285706 -10909726 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 2006 225 0 0 0 chr1 186285706 186285730 -10909702 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 2006 297 0 0 0 chr1 186285730 186285762 -10909670 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 2006 212 158 26 0 chr1 186287394 186287432 -10908000 + C-rich Low_complexity Low_complexity 5 43 0 4 2006 1443 293 131 41 chr1 186287528 186288260 -10907172 + L1MA6 LINE L1 5123 5946 -354 4 2006 2321 75 119 11 chr1 186288260 186288612 -10906820 - RLTR10 LTR ERVK 0 390 1 4 2006 1443 285 140 43 chr1 186288612 186288857 -10906575 + L1MA6 LINE L1 5947 6228 -72 4 2006 264 30 0 0 chr1 186288966 186288999 -10906433 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 4 2006 186 43 0 0 chr1 186289228 186289251 -10906181 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 2006 1143 68 7 0 chr1 186289563 186289710 -10905722 - B1_Mus1 SINE Alu 0 148 1 4 2006 671 109 0 0 chr1 186289713 186289805 -10905627 - 4.5SRNA scRNA scRNA -2 92 1 4 2006 998 320 48 29 chr1 186290483 186290898 -10904534 + MLT1C LTR MaLR 35 457 -10 4 2006 265 267 27 0 chr1 186291105 186291191 -10904241 + CT-rich Low_complexity Low_complexity 1 88 0 4 2006 423 0 0 0 chr1 186291191 186291238 -10904194 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 2006 257 295 18 37 chr1 186291238 186291261 -10904171 + C-rich Low_complexity Low_complexity 5 26 0 5 2006 958 193 11 0 chr1 186291937 186292118 -10903314 + URR1A DNA MER1_type 1 183 -43 5 2006 797 291 76 48 chr1 186292303 186292697 -10902735 - L1_Rod LINE L1 0 5847 5443 5 2006 704 283 0 0 chr1 186293025 186293191 -10902241 + B3A SINE B2 2 167 -31 5 2006 283 356 40 13 chr1 186293940 186294091 -10901341 - MER5A DNA MER1_type -34 155 1 5 2006 450 0 0 0 chr1 186294320 186294370 -10901062 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 2006 210 91 0 0 chr1 186294717 186294750 -10900682 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 2006 250 283 16 65 chr1 186295993 186296178 -10899254 + (CATA)n Simple_repeat Simple_repeat 2 177 0 5 2006 282 132 0 38 chr1 186296654 186296733 -10898699 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 2006 32 0 0 0 chr1 186298777 186298809 -10896623 + AT_rich Low_complexity Low_complexity 1 32 0 5 2006 7324 77 22 1 chr1 186299390 186300454 -10894978 + Lx4A LINE L1 5523 6618 -440 5 2006 510 149 45 83 chr1 186300444 186300576 -10894856 + Lx4A LINE L1 6932 7058 0 5 2006 564 56 0 0 chr1 186301401 186301473 -10893959 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 2006 187 376 0 10 chr1 186301628 186301730 -10893702 - MIR SINE MIR -74 134 34 5 2006 1056 121 11 0 chr1 186303588 186303762 -10891670 + URR1B DNA MER1_type 49 224 -1 5 2006 704 225 65 38 chr1 186303762 186303947 -10891485 + B3A SINE B2 2 191 -7 5 2006 387 0 0 0 chr1 186304265 186304308 -10891124 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 2006 787 245 0 58 chr1 186305551 186305759 -10889673 + B3A SINE B2 2 197 -1 5 2006 705 212 57 6 chr1 186306882 186307039 -10888393 + RSINE1 SINE B4 1 165 0 5 2006 259 250 0 16 chr1 186307039 186307100 -10888332 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 2006 565 223 17 34 chr1 186307720 186308012 -10887420 + CT-rich Low_complexity Low_complexity 1 287 0 5 2006 261 0 0 0 chr1 186308714 186308743 -10886689 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 2006 783 182 3 17 chr1 186309293 186309646 -10885786 + CT-rich Low_complexity Low_complexity 1 347 0 5 2006 198 103 0 0 chr1 186309954 186309983 -10885449 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 5 2006 399 286 53 21 chr1 186310735 186310924 -10884508 - MIR SINE MIR -67 195 1 5 2006 297 258 10 58 chr1 186311011 186311114 -10884318 - MIRb SINE MIR -93 175 78 5 2006 857 149 23 0 chr1 186311860 186312035 -10883397 + CT-rich Low_complexity Low_complexity 2 180 0 5 2006 397 255 54 14 chr1 186312169 186312316 -10883116 - MER53 DNA hAT 0 193 41 5 2006 252 86 0 0 chr1 186313059 186313094 -10882338 + (CTG)n Simple_repeat Simple_repeat 1 35 0 5 2006 324 0 0 0 chr1 186313092 186313128 -10882304 + (TGG)n Simple_repeat Simple_repeat 1 36 0 5 2006 589 203 60 8 chr1 186313160 186313294 -10882138 + B1F1 SINE Alu 8 148 -1 5 2006 1150 246 20 74 chr1 186314126 186314517 -10880915 - MTE2a LTR MaLR 0 379 10 5 2006 545 269 19 25 chr1 186314529 186314689 -10880743 + B3A SINE B2 24 182 -16 5 2006 274 188 19 29 chr1 186314764 186314868 -10880564 + (CATA)n Simple_repeat Simple_repeat 2 104 0 5 2006 1481 93 119 0 chr1 186314915 186315151 -10880281 - Lx3A LINE L1 -2 6979 6716 5 2006 476 220 124 78 chr1 186316126 186316279 -10879153 - B3A SINE B2 -38 160 1 5 2006 465 66 0 0 chr1 186316696 186316757 -10878675 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 2006 450 0 0 0 chr1 186316757 186316806 -10878626 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 2006 219 69 0 0 chr1 186316809 186316838 -10878594 + (CGATG)n Simple_repeat Simple_repeat 1 29 0 5 2006 464 290 45 8 chr1 186316847 186316979 -10878453 - RSINE1 SINE B4 -26 139 3 5 2006 1152 40 0 0 chr1 186317144 186317294 -10878138 + (TG)n Simple_repeat Simple_repeat 2 151 0 5 2006 375 234 30 69 chr1 186317298 186317399 -10878033 - PB1D10 SINE Alu -15 102 6 5 2006 246 105 0 0 chr1 186318303 186318341 -10877091 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 2006 454 270 104 30 chr1 186318348 186318415 -10877017 + Lx9 LINE L1 6329 6401 -1243 5 2006 249 108 0 0 chr1 186318415 186318452 -10876980 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 2006 454 269 473 19 chr1 186318452 186318604 -10876828 + Lx9 LINE L1 6402 6622 -1022 5 2006 1024 261 77 72 chr1 186318646 186319051 -10876381 + Lx9 LINE L1 6785 7191 -453 5 2006 586 280 31 26 chr1 186319489 186319680 -10875752 - B3A SINE B2 -2 196 5 5 2006 510 17 0 0 chr1 186319708 186319767 -10875665 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 2006 269 247 11 21 chr1 186320508 186320603 -10874829 - B1F SINE Alu -1 148 55 5 2006 502 316 156 18 chr1 186320724 186321050 -10874382 + MLT1B LTR MaLR 14 384 -6 5 2006 738 191 120 14 chr1 186321077 186321226 -10874206 + ORR1D1 LTR MaLR 9 180 -194 5 2006 955 77 7 7 chr1 186321226 186321369 -10874063 + (TCTCCC)n Simple_repeat Simple_repeat 3 145 0 5 2006 738 191 120 14 chr1 186321369 186321436 -10873996 + ORR1D1 LTR MaLR 181 247 -127 5 2006 1201 175 14 0 chr1 186321895 186322106 -10873326 + B3 SINE B2 3 216 0 5 2006 997 72 18 29 chr1 186322379 186322550 -10872882 + (GGGAGA)n Simple_repeat Simple_repeat 1 169 0 5 2006 938 188 118 5 chr1 186322641 186322844 -10872588 - URR1A DNA MER1_type 0 226 1 5 2006 418 297 76 0 chr1 186323425 186323570 -10871862 + RSINE1 SINE B4 2 157 -8 5 2006 1731 103 59 31 chr1 186323803 186324093 -10871339 - Lx LINE L1 0 6654 6357 5 2006 677 188 25 50 chr1 186324447 186324634 -10870798 + B3 SINE B2 1 192 -3 5 2006 396 279 84 21 chr1 186324856 186324999 -10870433 - RSINE1 SINE B4 -10 155 4 5 2006 2229 141 58 33 chr1 186325122 186325519 -10869913 - MTB_Mm LTR MaLR 0 407 1 5 2006 300 91 0 0 chr1 186325654 186325698 -10869734 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 2006 676 239 6 43 chr1 186326682 186326844 -10868588 + B3A SINE B2 2 157 -41 5 2006 414 0 0 0 chr1 186326852 186326898 -10868534 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 2006 626 256 35 40 chr1 186327426 186327625 -10867807 - B3A SINE B2 0 198 1 5 2006 26 0 0 0 chr1 186327767 186327793 -10867639 + AT_rich Low_complexity Low_complexity 1 26 0 5 2006 265 318 149 64 chr1 186327927 186328162 -10867270 - LTR16C LTR ERVL 0 489 235 5 2006 190 290 21 31 chr1 186329215 186329311 -10866121 - MIRb SINE MIR -150 118 24 5 2006 769 170 20 33 chr1 186329405 186329557 -10865875 + B1_Mur4 SINE Alu 1 150 0 5 2006 1010 113 0 12 chr1 186329557 186329669 -10865763 + (GAA)n Simple_repeat Simple_repeat 3 114 0 5 2006 1281 56 0 0 chr1 186329669 186329848 -10865584 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 2006 1010 113 0 12 chr1 186329848 186329905 -10865527 + (GAA)n Simple_repeat Simple_repeat 1 56 0 5 2006 27 29 0 0 chr1 186330300 186330334 -10865098 + AT_rich Low_complexity Low_complexity 1 34 0 5 2006 529 168 149 16 chr1 186330451 186330572 -10864860 + RMER19B LTR ERVK 1 137 -765 5 2006 2774 197 84 81 chr1 186330549 186331394 -10864038 + RMER19B LTR ERVK 55 902 0 5 2006 540 275 70 27 chr1 186331853 186332111 -10863321 + L1MC3 LINE L1 5013 5281 -865 5 2006 180 0 0 0 chr1 186332139 186332159 -10863273 + (TGG)n Simple_repeat Simple_repeat 1 20 0 5 2006 339 329 88 38 chr1 186332196 186332458 -10862974 + L1MCb LINE L1 273 547 -5498 5 2006 450 279 80 93 chr1 186332510 186332735 -10862697 - B4 SINE B4 -64 228 7 5 2006 522 247 150 6 chr1 186332734 186332901 -10862531 - B4A SINE B4 -59 233 43 5 2006 496 340 0 26 chr1 186332952 186333103 -10862329 + RSINE1 SINE B4 2 148 -17 5 2006 408 281 201 20 chr1 186333134 186333189 -10862243 + L1MC3 LINE L1 5313 5372 -2413 5 2006 909 93 0 0 chr1 186333189 186333318 -10862114 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 5 2006 408 281 201 20 chr1 186333318 186333516 -10861916 + L1MC3 LINE L1 5373 5611 -2174 5 2006 898 321 145 65 chr1 186333705 186335239 -10860193 + L1MC3 LINE L1 6107 7763 -22 5 2006 302 317 44 87 chr1 186335669 186336032 -10859400 + ORR1E LTR MaLR 6 370 -9 5 2006 269 234 41 80 chr1 186337461 186337561 -10857871 + MLT1H LTR MaLR 394 532 -17 5 2006 2348 301 80 14 chr1 186337616 186338528 -10856904 + Lx8 LINE L1 6502 7473 0 5 2006 584 266 75 16 chr1 186339340 186339527 -10855905 + MTD LTR MaLR 1 198 -221 5 2006 324 222 226 8 chr1 186339548 186339669 -10855763 + MTD LTR MaLR 241 404 -15 5 2006 282 186 204 23 chr1 186340053 186340141 -10855291 + MLT1A1 LTR MaLR 300 403 -5 5 2006 444 306 104 63 chr1 186340336 186340671 -10854761 + MLT1A0 LTR MaLR 6 354 -11 5 2006 634 274 72 25 chr1 186340696 186340932 -10854500 - MLT1B LTR MaLR -108 282 36 5 2006 1246 120 17 0 chr1 186341169 186341344 -10854088 + B2_Mm2 SINE B2 2 179 -16 5 2006 432 0 0 0 chr1 186341349 186341397 -10854035 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 5 2006 424 296 0 86 chr1 186341545 186341719 -10853713 + RSINE1 SINE B4 5 163 -2 5 2006 441 0 0 0 chr1 186342093 186342142 -10853290 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 5 2006 324 310 147 0 chr1 186342701 186342817 -10852615 + B1F1 SINE Alu 15 147 -2 5 2006 592 276 204 22 chr1 186344165 186344518 -10850914 + MTD LTR MaLR 5 405 -14 5 2006 226 239 0 0 chr1 186346027 186346073 -10849359 + RSINE1 SINE B4 108 153 -12 5 2006 240 35 0 0 chr1 186346115 186346144 -10849288 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 2006 361 364 76 42 chr1 186347325 186347801 -10847631 + L1MEc LINE L1 349 840 -5560 5 2006 7034 55 2 0 chr1 186348096 186348949 -10846483 - L1_Mus2 LINE L1 -1 6565 5711 5 2006 312 91 0 0 chr1 186349263 186349307 -10846125 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 2006 1102 276 46 88 chr1 186349341 186349526 -10845906 - L1MA5 LINE L1 -412 5888 5684 5 2006 1267 237 31 57 chr1 186349526 186349911 -10845521 - MTEa LTR MaLR -4 375 1 5 2006 1102 283 56 82 chr1 186349911 186350459 -10844973 - L1MA5 LINE L1 -577 5723 5161 5 2006 291 222 0 0 chr1 186350468 186350531 -10844901 + ORR1C2 LTR MaLR 159 221 -149 5 2006 291 222 0 0 chr1 186350579 186350642 -10844790 + ORR1D2 LTR MaLR 159 221 -149 6 2006 830 200 58 24 chr1 186350690 186350895 -10844537 + ORR1D2 LTR MaLR 159 370 0 6 2006 282 56 0 0 chr1 186350910 186350946 -10844486 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 2006 327 49 0 0 chr1 186350963 186351004 -10844428 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 2006 260 289 171 24 chr1 186351056 186351226 -10844206 + L1ME1 LINE L1 5486 5680 -499 6 2006 474 304 70 23 chr1 186351379 186351638 -10843794 + L1ME1 LINE L1 5674 5944 -235 6 2006 902 263 105 38 chr1 186351669 186352013 -10843419 - MTEa LTR MaLR 0 379 13 6 2006 2190 275 71 39 chr1 186352049 186352795 -10842637 - MTEa-int LTR MaLR -26 1554 785 6 2006 498 303 105 27 chr1 186353109 186353174 -10842258 - L1M2 LINE L1 -629 5668 5591 6 2006 396 0 0 0 chr1 186353174 186353218 -10842214 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 2006 498 303 105 27 chr1 186353218 186353336 -10842096 - L1M2 LINE L1 -707 5590 5477 6 2006 412 105 0 26 chr1 186353336 186353414 -10842018 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 2006 498 303 105 27 chr1 186353414 186353487 -10841945 - L1M2 LINE L1 -821 5476 5393 6 2006 411 21 0 0 chr1 186353499 186353547 -10841885 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 2006 239 225 48 48 chr1 186353911 186353995 -10841437 - MTEb LTR MaLR 0 379 296 6 2006 189 19 71 54 chr1 186354056 186354112 -10841320 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 6 2006 24 0 0 0 chr1 186354112 186354136 -10841296 + AT_rich Low_complexity Low_complexity 1 24 0 6 2006 596 110 38 0 chr1 186354144 186354261 -10841171 + ORR1C2 LTR MaLR 208 384 0 5 2006 271 325 0 0 chr1 186354704 186354787 -10840645 + G-rich Low_complexity Low_complexity 5 87 0 6 2006 450 0 0 0 chr1 186355210 186355260 -10840172 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 2006 414 0 0 0 chr1 186355260 186355305 -10840127 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 2006 532 285 51 78 chr1 186355306 186355599 -10839833 - B4A SINE B4 -4 288 4 6 2006 751 158 7 7 chr1 186355951 186356098 -10839334 + GA-rich Low_complexity Low_complexity 3 149 0 6 2006 675 140 13 6 chr1 186357218 186357376 -10838056 + (TG)n Simple_repeat Simple_repeat 1 159 0 6 2006 189 154 0 0 chr1 186358199 186358238 -10837194 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 2006 230 247 59 47 chr1 186360858 186360943 -10834489 + PB1D9 SINE Alu 23 108 -12 6 2006 549 299 147 80 chr1 186360985 186361434 -10833998 + Lx7 LINE L1 6980 7471 -2 6 2006 235 261 0 42 chr1 186361465 186361537 -10833895 + B4A SINE B4 223 291 -1 6 2006 537 183 0 0 chr1 186361567 186361671 -10833761 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 2006 237 119 0 0 chr1 186362304 186362346 -10833086 + (T)n Simple_repeat Simple_repeat 1 42 0 6 2006 350 42 0 20 chr1 186363198 186363247 -10832185 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 6 2006 257 239 52 21 chr1 186363255 186363354 -10832078 - B1F SINE Alu -9 111 13 6 2006 283 45 0 43 chr1 186364354 186364401 -10831031 + (AGGGGG)n Simple_repeat Simple_repeat 4 48 0 6 2006 8625 29 0 2 chr1 186364457 186365519 -10829913 - L1Md_T LINE L1 0 6582 5522 6 2006 808 37 0 18 chr1 186365519 186365629 -10829803 + (AGGGGG)n Simple_repeat Simple_repeat 6 113 0 6 2006 302 0 0 26 chr1 186367836 186367875 -10827557 + (TAA)n Simple_repeat Simple_repeat 2 39 0 6 2006 977 205 74 35 chr1 186368282 186368565 -10826867 + MTEb LTR MaLR 86 379 0 6 2006 457 271 25 0 chr1 186368564 186368686 -10826746 + PB1 SINE Alu 1 125 -2 6 2006 189 107 0 0 chr1 186368686 186368714 -10826718 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 6 2006 254 231 0 0 chr1 186369647 186369699 -10825733 - tRNA-Ala-GCA tRNA tRNA -13 62 11 6 2006 229 175 0 0 chr1 186369880 186369920 -10825512 + (CGTG)n Simple_repeat Simple_repeat 1 40 0 6 2006 500 236 104 104 chr1 186369921 186370190 -10825242 - B4 SINE B4 0 292 24 6 2006 575 313 9 14 chr1 186370879 186371096 -10824336 - B3 SINE B2 0 216 1 6 2006 198 0 51 51 chr1 186371130 186371169 -10824263 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 6 2006 745 172 0 15 chr1 186371169 186371305 -10824127 - B1_Mm SINE Alu 0 147 14 6 2006 334 183 51 119 chr1 186371206 186371324 -10824108 - MT2B LTR ERVL -337 264 155 6 2006 396 0 0 0 chr1 186372375 186372419 -10823013 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 2006 424 326 81 67 chr1 186372423 186372706 -10822726 - B4A SINE B4 -2 290 4 6 2006 583 222 134 0 chr1 186373205 186373331 -10822101 + B3A SINE B2 5 148 -50 6 2006 252 77 0 0 chr1 186373331 186373370 -10822062 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 2006 583 222 134 0 chr1 186373370 186373414 -10822018 + B3A SINE B2 149 197 -1 6 2006 390 159 0 0 chr1 186375105 186375174 -10820258 + GA-rich Low_complexity Low_complexity 3 71 0 6 2006 272 171 0 26 chr1 186375856 186375934 -10819498 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 6 2006 234 91 0 0 chr1 186375968 186376001 -10819431 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 2006 724 249 5 56 chr1 186376841 186377037 -10818395 + B3A SINE B2 2 187 -11 6 2006 632 115 9 0 chr1 186377148 186377261 -10818171 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 6 2006 695 267 49 24 chr1 186377724 186377970 -10817462 + MTD LTR MaLR 18 269 -150 6 2006 360 0 0 0 chr1 186377970 186378010 -10817422 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 2006 21 0 0 0 chr1 186378022 186378043 -10817389 + AT_rich Low_complexity Low_complexity 1 21 0 6 2006 531 149 29 129 chr1 186378065 186378235 -10817197 + Lx4B LINE L1 6905 7057 -1 6 2006 504 239 30 7 chr1 186378246 186378381 -10817051 + MTD LTR MaLR 282 419 0 6 2006 1011 146 356 18 chr1 186379848 186380135 -10815297 - RMER4A LTR ERVK -82 384 1 6 2006 315 0 0 0 chr1 186380252 186380287 -10815145 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 2006 323 269 0 0 chr1 186380595 186380662 -10814770 + B4A SINE B4 112 178 -114 6 2006 259 261 137 17 chr1 186381697 186381814 -10813618 - MIR SINE MIR -112 150 20 6 2006 694 219 80 0 chr1 186382575 186382726 -10812706 + RSINE1 SINE B4 2 164 -1 6 2006 494 129 54 5 chr1 186382727 186382938 -10812494 + (CA)n Simple_repeat Simple_repeat 1 221 0 6 2006 226 248 71 47 chr1 186383305 186383432 -10812000 + L1ME4a LINE L1 5987 6116 -8 6 2006 27 29 0 0 chr1 186383432 186383466 -10811966 + AT_rich Low_complexity Low_complexity 1 34 0 6 2006 408 286 88 77 chr1 186383578 186383839 -10811593 + B4A SINE B4 2 265 -27 6 2006 605 119 10 0 chr1 186383881 186383982 -10811450 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 2007 369 0 0 0 chr1 186385507 186385548 -10809884 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 2007 200 31 0 59 chr1 186387419 186387453 -10807979 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 6 2007 1151 88 0 0 chr1 186387458 186387605 -10807827 + B1_Mus2 SINE Alu 1 147 0 6 2007 198 26 50 25 chr1 186387610 186387650 -10807782 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 2007 258 32 0 0 chr1 186388291 186388322 -10807110 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 2007 23 0 0 0 chr1 186388424 186388447 -10806985 + AT_rich Low_complexity Low_complexity 1 23 0 6 2007 235 184 18 55 chr1 186390157 186390266 -10805166 + GA-rich Low_complexity Low_complexity 2 106 0 6 2007 382 296 72 0 chr1 186390336 186390461 -10804971 - B3 SINE B2 -81 135 2 6 2007 200 242 0 40 chr1 186390567 186390666 -10804766 + CT-rich Low_complexity Low_complexity 2 96 0 6 2007 1033 188 0 54 chr1 186390838 186391041 -10804391 + B3A SINE B2 3 194 -4 6 2007 22 0 0 0 chr1 186391146 186391168 -10804264 + AT_rich Low_complexity Low_complexity 1 22 0 6 2007 4257 39 2 28 chr1 186391554 186392087 -10803345 - L1Md_F2 LINE L1 -4 6578 6060 6 2007 4294 33 0 0 chr1 186392087 186392783 -10802649 + L1Md_F2 LINE L1 5385 6080 -502 6 2007 671 263 40 12 chr1 186392880 186393053 -10802379 + Lx8 LINE L1 7152 7329 -144 6 2007 219 36 0 0 chr1 186393053 186393081 -10802351 + (TAA)n Simple_repeat Simple_repeat 1 28 0 6 2007 603 277 98 38 chr1 186393216 186393482 -10801950 - B4 SINE B4 -6 286 5 6 2007 325 311 120 19 chr1 186393494 186393753 -10801679 - L1MDa LINE L1 -4798 1835 1551 6 2007 496 256 87 31 chr1 186394042 186394296 -10801136 - L1MDa LINE L1 -5197 1436 1169 6 2007 836 312 107 58 chr1 186394416 186394919 -10800513 - L1MDa LINE L1 -5502 1131 604 6 2007 628 250 1 42 chr1 186394935 186395118 -10800314 - MTD LTR MaLR -233 167 13 6 2007 182 91 0 29 chr1 186395120 186395154 -10800278 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 2007 239 295 0 0 chr1 186395164 186395225 -10800207 - L1MDa LINE L1 -6542 91 31 6 2007 2676 129 42 2 chr1 186395347 186395752 -10799680 - MTC LTR MaLR 0 421 1 6 2007 673 346 56 0 chr1 186396177 186396443 -10798989 + B4A SINE B4 4 284 -8 6 2007 350 91 18 0 chr1 186396478 186396533 -10798899 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 2007 228 325 0 49 chr1 186397162 186397243 -10798189 - ID2 SINE ID -5 78 2 6 2007 2470 216 87 58 chr1 186397798 186398543 -10796889 + RMER13A LTR ERVK 1 767 -93 6 2007 306 0 0 0 chr1 186399010 186399044 -10796388 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 6 2007 753 189 234 0 chr1 186399048 186399223 -10796209 - B3 SINE B2 0 216 1 6 2007 709 214 0 135 chr1 186399670 186399848 -10795584 + B3A SINE B2 1 154 -44 6 2007 288 0 0 0 chr1 186399859 186399891 -10795541 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 2007 2300 263 73 46 chr1 186400973 186401687 -10793745 - Lx8 LINE L1 0 7473 6741 6 2007 957 126 101 12 chr1 186401698 186401867 -10793565 - RMER19B LTR ERVK -12 890 707 6 2007 2668 152 61 100 chr1 186401863 186402454 -10792978 - RMER19B LTR ERVK -334 568 1 6 2007 1208 240 20 4 chr1 186402458 186402713 -10792719 - Lx8 LINE L1 -731 6742 6484 6 2007 439 68 0 0 chr1 186404021 186404080 -10791352 - U6 snRNA snRNA -38 69 11 6 2007 530 231 38 19 chr1 186404910 186405069 -10790363 - MamRep1161 DNA TcMar -794 163 2 6 2007 388 213 123 14 chr1 186409107 186409245 -10786187 + B4A SINE B4 1 153 -139 6 2007 531 194 83 23 chr1 186409249 186409381 -10786051 + MTD LTR MaLR 272 411 -8 6 2007 29 0 0 0 chr1 186409437 186409466 -10785966 + AT_rich Low_complexity Low_complexity 1 29 0 6 2007 252 0 0 0 chr1 186409992 186410020 -10785412 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 2007 2331 215 16 57 chr1 186410424 186410995 -10784437 + Lx5 LINE L1 6178 7050 0 6 2007 3865 253 66 11 chr1 186411480 186412456 -10782976 + Lx8 LINE L1 6385 7413 -60 7 2007 245 307 29 10 chr1 186412533 186412635 -10782797 - RMER15 LTR ERVL -65 510 407 7 2007 216 67 0 0 chr1 186413996 186414026 -10781406 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 7 2007 560 195 58 32 chr1 186414075 186414229 -10781203 - Lx4B LINE L1 -6 7052 6895 7 2007 274 196 4 0 chr1 186415127 186415195 -10780237 - PB1D9 SINE Alu -9 111 40 7 2007 414 0 0 0 chr1 186415309 186415355 -10780077 + (TAA)n Simple_repeat Simple_repeat 2 47 0 7 2007 220 341 36 14 chr1 186415703 186415843 -10779589 - L2a LINE L2 -187 3239 3097 7 2007 278 356 0 55 chr1 186415993 186416028 -10779404 - L2a LINE L2 -525 2894 2865 7 2007 485 324 93 32 chr1 186416028 186416372 -10779060 + MLT1A0 LTR MaLR 1 365 0 7 2007 278 356 0 55 chr1 186416372 186416538 -10778894 - L2a LINE L2 -555 2864 2704 7 2007 561 254 94 29 chr1 186416871 186417145 -10778287 + RMER20B LTR ERVK 136 426 -90 7 2007 192 309 51 77 chr1 186417257 186417453 -10777979 - L2a LINE L2 -869 2550 2360 7 2007 607 301 47 103 chr1 186420050 186420097 -10775335 - ORR1E LTR MaLR -20 339 307 7 2007 4335 48 2 2 chr1 186420097 186420623 -10774809 + L1_Mus1 LINE L1 6041 6566 -1 7 2007 607 301 47 103 chr1 186420623 186420934 -10774498 - ORR1E LTR MaLR -53 306 1 7 2007 374 302 54 72 chr1 186421028 186421249 -10774183 + ID_B1 SINE B4 3 219 -5 7 2007 2258 30 11 0 chr1 186421267 186421537 -10773895 - L1Md_F2 LINE L1 -1434 4449 4177 7 2007 7197 62 3 4 chr1 186421533 186422444 -10772988 + L1Md_F2 LINE L1 4459 5368 -515 7 2007 7854 48 6 13 chr1 186422445 186423265 -10772167 + L1Md_F2 LINE L1 5608 6431 -151 7 2007 2098 125 38 145 chr1 186423265 186423797 -10771635 + IAPLTR2_Mm LTR ERVK 1 475 0 7 2007 7854 48 6 13 chr1 186423797 186423958 -10771474 + L1Md_F2 LINE L1 6432 6582 0 7 2007 558 240 16 8 chr1 186424163 186424289 -10771143 + B3A SINE B2 3 129 -69 7 2007 486 265 117 45 chr1 186425141 186425295 -10770137 - RSINE1 SINE B4 0 165 1 7 2007 829 169 126 11 chr1 186425296 186425487 -10769945 + URR1A DNA MER1_type 5 217 -9 7 2007 210 191 0 0 chr1 186426935 186426977 -10768455 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 2007 936 269 18 15 chr1 186427042 186427314 -10768118 - B4A SINE B4 -18 274 2 7 2007 21 0 0 0 chr1 186427409 186427430 -10768002 + AT_rich Low_complexity Low_complexity 1 21 0 7 2007 1237 101 15 45 chr1 186427653 186427851 -10767581 - B2_Mm1t SINE B2 0 193 2 7 2007 564 284 112 52 chr1 186428379 186428647 -10766785 + B4A SINE B4 3 286 -6 7 2007 493 278 0 0 chr1 186428951 186429059 -10766373 + RSINE1 SINE B4 4 111 -54 7 2007 886 288 44 59 chr1 186431564 186431904 -10763528 - MER102b DNA MER1_type -6 335 1 7 2007 369 0 0 0 chr1 186432391 186432432 -10763000 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 2007 187 29 27 54 chr1 186434104 186434141 -10761291 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 7 2007 4607 67 2 7 chr1 186434802 186435385 -10760047 + MT2B2 LTR ERVL 1 580 -4 7 2007 359 284 0 0 chr1 186435522 186435603 -10759829 + B4 SINE B4 5 85 -207 7 2007 761 289 22 61 chr1 186435638 186435915 -10759517 + B4A SINE B4 27 292 0 7 2007 337 315 23 46 chr1 186435978 186436161 -10759271 + B4 SINE B4 82 279 -13 7 2007 432 0 0 0 chr1 186436195 186436243 -10759189 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 2007 341 265 176 48 chr1 186436389 186436592 -10758840 + L1MD LINE L1 5406 5645 -2350 7 2007 1859 114 96 10 chr1 186436592 186436894 -10758538 - ORR1A4 LTR MaLR 0 329 2 7 2007 341 265 176 48 chr1 186436894 186436940 -10758492 + L1MD LINE L1 5646 5687 -2308 7 2007 548 244 32 59 chr1 186436946 186437133 -10758299 + B4 SINE B4 1 182 -110 7 2007 305 293 134 38 chr1 186437133 186437371 -10758061 + L1MD3 LINE L1 6395 6655 -1227 7 2007 342 0 0 0 chr1 186437387 186437425 -10758007 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 2007 866 248 19 232 chr1 186437437 186437899 -10757533 + MTE2b LTR MaLR 9 372 -7 7 2007 683 299 37 142 chr1 186437900 186438442 -10756990 + L1MD3 LINE L1 6659 7143 -852 7 2007 287 297 99 0 chr1 186438451 186438552 -10756880 + PB1 SINE Alu 10 120 -7 7 2007 315 0 0 0 chr1 186438656 186438691 -10756741 + (A)n Simple_repeat Simple_repeat 1 35 0 7 2007 373 291 92 72 chr1 186438881 186439173 -10756259 + MLT1H LTR MaLR 91 388 -161 7 2007 796 177 76 22 chr1 186439409 186439594 -10755838 + B3A SINE B2 1 195 -3 7 2007 22 35 0 0 chr1 186439678 186439707 -10755725 + AT_rich Low_complexity Low_complexity 1 29 0 7 2007 216 0 0 0 chr1 186440078 186440102 -10755330 + (T)n Simple_repeat Simple_repeat 1 24 0 7 2007 750 253 20 15 chr1 186440627 186440828 -10754604 - B3 SINE B2 0 216 15 7 2007 1584 179 23 10 chr1 186442657 186442957 -10752475 - RMER15 LTR ERVL 0 575 272 7 2007 943 251 67 104 chr1 186443179 186443565 -10751867 - MTE2a LTR MaLR 0 379 8 7 2007 582 303 119 18 chr1 186443572 186443752 -10751680 - MLT1B LTR MaLR -20 370 185 7 2007 192 125 0 0 chr1 186443752 186443784 -10751648 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 7 2007 582 303 119 18 chr1 186443784 186443939 -10751493 - MLT1B LTR MaLR -206 184 1 7 2007 686 319 59 45 chr1 186445179 186445465 -10749967 + B4A SINE B4 3 292 0 7 2007 241 290 16 0 chr1 186445606 186445668 -10749764 + GA-rich Low_complexity Low_complexity 4 66 0 7 2007 446 49 16 0 chr1 186446997 186447058 -10748374 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 2007 350 286 44 27 chr1 186447605 186447749 -10747683 + MIRb SINE MIR 15 161 -101 7 2007 269 324 0 0 chr1 186448018 186448092 -10747340 + ID4 SINE ID 1 74 -9 7 2007 603 0 0 0 chr1 186448583 186448650 -10746782 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 2007 792 175 0 0 chr1 186448653 186448779 -10746653 + B1_Mur2 SINE Alu 24 149 0 7 2007 24 32 0 0 chr1 186449147 186449178 -10746254 + AT_rich Low_complexity Low_complexity 1 31 0 7 2007 521 252 129 68 chr1 186449567 186449831 -10745601 + L1MB3 LINE L1 5486 5765 -406 7 2007 677 253 29 0 chr1 186449873 186450047 -10745385 - MTEb LTR MaLR -14 365 187 7 2007 186 43 0 0 chr1 186450047 186450070 -10745362 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 2007 708 166 7 26 chr1 186450105 186450260 -10745172 - Lx5 LINE L1 0 7050 6899 7 2007 533 262 20 26 chr1 186450279 186450432 -10745000 - MTEb LTR MaLR -208 171 20 7 2007 364 305 65 28 chr1 186450437 186450653 -10744779 + L1MB3 LINE L1 5787 6010 -173 7 2007 339 299 0 10 chr1 186450673 186450771 -10744661 - PB1D10 SINE Alu -16 101 5 7 2007 233 230 0 13 chr1 186450821 186450896 -10744536 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 2007 406 214 14 0 chr1 186450955 186451095 -10744337 + (TG)n Simple_repeat Simple_repeat 2 143 0 7 2007 400 283 0 111 chr1 186451179 186451314 -10744118 - PB1 SINE Alu -2 125 6 7 2007 254 241 111 15 chr1 186451325 186451460 -10743972 + L1MB3 LINE L1 6023 6170 -1 7 2007 238 268 92 10 chr1 186451530 186451628 -10743804 - L1M5 LINE L1 -230 5894 5789 7 2007 897 207 86 35 chr1 186451798 186451988 -10743444 - MTD LTR MaLR -151 268 64 7 2007 1148 162 174 44 chr1 186451988 186452350 -10743082 - RLTR9E LTR ERVK 0 409 1 7 2007 897 207 86 35 chr1 186452350 186452414 -10743018 - MTD LTR MaLR -356 63 1 7 2007 192 222 89 36 chr1 186452647 186452759 -10742673 - MIRc SINE MIR -135 133 16 7 2007 442 215 476 0 chr1 186452762 186452995 -10742437 + MTEa LTR MaLR 10 370 -9 7 2007 369 43 0 0 chr1 186453029 186453076 -10742356 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 2007 506 215 161 0 chr1 186453087 186453217 -10742215 - B3A SINE B2 -46 152 2 7 2007 684 74 0 0 chr1 186454765 186454860 -10740572 + (TG)n Simple_repeat Simple_repeat 1 95 0 7 2007 575 203 34 0 chr1 186454893 186455011 -10740421 - RSINE1 SINE B4 -40 125 4 7 2007 217 0 61 0 chr1 186455577 186455610 -10739822 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 2007 195 129 0 0 chr1 186456191 186456222 -10739210 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 2007 793 269 10 5 chr1 186456513 186456711 -10738721 - B3 SINE B2 -17 199 1 7 2007 3581 133 12 5 chr1 186456778 186457343 -10738089 - L1_Mur2 LINE L1 -1036 4841 4273 7 2007 3901 139 20 0 chr1 186457345 186457955 -10737477 + L1_Mur2 LINE L1 4836 5457 -420 7 2007 36522 50 1 29 chr1 186457949 186463231 -10732201 + Lx5 LINE L1 238 5589 -297 7 2007 8723 28 0 0 chr1 186463231 186464226 -10731206 + L1Md_T LINE L1 5587 6581 -1 7 2007 36522 82 6 24 chr1 186464226 186464862 -10730570 + Lx5 LINE L1 5590 6091 -962 7 2007 307 324 69 0 chr1 186465137 186465282 -10730150 + MTE-int LTR MaLR 1158 1312 -268 7 2007 823 260 93 20 chr1 186465495 186465742 -10729690 - Lx8 LINE L1 -824 6649 6385 7 2007 695 262 19 0 chr1 186465791 186465951 -10729481 - B3A SINE B2 -34 164 2 7 2007 857 275 60 18 chr1 186465957 186466242 -10729190 - Lx8 LINE L1 -1080 6393 6097 7 2007 492 310 70 37 chr1 186466383 186466624 -10728808 - MTE-int LTR MaLR -595 985 737 7 2007 291 303 0 0 chr1 186466763 186466862 -10728570 - HAL1 LINE L1 -346 2161 2063 7 2007 339 227 171 0 chr1 186467321 186467409 -10728023 - PB1D10 SINE Alu -10 107 5 7 2007 505 315 8 58 chr1 186467709 186467930 -10727502 + B3A SINE B2 3 212 -4 7 2007 720 52 0 0 chr1 186468084 186468181 -10727251 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 2007 315 0 0 0 chr1 186468181 186468215 -10727217 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 2007 340 143 24 0 chr1 186468220 186468304 -10727128 + CT-rich Low_complexity Low_complexity 1 86 0 7 2007 745 227 6 11 chr1 186468304 186468482 -10726950 + MTEb LTR MaLR 201 377 -2 7 2007 300 53 0 0 chr1 186470502 186470540 -10724892 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 2007 876 270 42 25 chr1 186470540 186470817 -10724615 - B4A SINE B4 -8 284 2 7 2007 547 230 110 12 chr1 186471139 186471302 -10724130 + Lx8 LINE L1 6969 7147 -326 7 2007 272 269 158 20 chr1 186471299 186471451 -10723981 + Lx8 LINE L1 7300 7472 -1 7 2007 204 40 0 0 chr1 186472567 186472592 -10722840 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 7 2007 2292 245 64 58 chr1 186472760 186473415 -10722017 - Lx7 LINE L1 -530 7166 6508 7 2007 202 246 46 41 chr1 186473496 186473589 -10721843 + MIRm SINE MIR 103 198 -64 7 2007 326 222 44 11 chr1 186473632 186473723 -10721709 + PB1D10 SINE Alu 24 117 0 7 2007 1210 56 0 0 chr1 186475272 186475415 -10720017 + B1_Mm SINE Alu 1 143 -4 7 2007 1161 112 0 0 chr1 186475416 186475659 -10719773 + (GAA)n Simple_repeat Simple_repeat 1 243 0 7 2007 417 256 11 0 chr1 186475862 186475952 -10719480 - PB1D10 SINE Alu -26 91 1 7 2007 210 71 0 0 chr1 186476265 186476293 -10719139 + (TAGG)n Simple_repeat Simple_repeat 1 28 0 7 2007 554 138 35 0 chr1 186476293 186476438 -10718994 + (CATA)n Simple_repeat Simple_repeat 3 152 0 7 2007 1009 106 6 11 chr1 186476455 186476636 -10718796 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 8 2007 192 125 0 0 chr1 186476684 186476716 -10718716 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 8 2007 462 114 0 0 chr1 186477652 186477722 -10717710 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 2007 222 118 0 0 chr1 186477961 186477995 -10717437 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 2007 247 123 15 0 chr1 186478003 186478068 -10717364 + MT2A LTR ERVL 466 531 -2 8 2007 1926 194 26 10 chr1 186478650 186479036 -10716396 - Lx5 LINE L1 -3 7047 6656 8 2007 1357 302 95 8 chr1 186479539 186480147 -10715285 - ERVL-E-int LTR ERVL -1152 4515 3855 8 2007 2564 54 131 3 chr1 186480321 186480672 -10714760 + MTA_Mm LTR MaLR 1 396 0 8 2007 627 222 44 7 chr1 186480919 186481055 -10714377 + B1_Mur1 SINE Alu 1 141 -8 8 2007 412 307 32 13 chr1 186481101 186481256 -10714176 - ERVL-E-int LTR ERVL -2278 3479 3322 8 2007 735 108 0 0 chr1 186481557 186481668 -10713764 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 8 2007 254 245 88 39 chr1 186482112 186482214 -10713218 - ERVL-E-int LTR ERVL -3490 2224 2118 8 2007 270 256 24 0 chr1 186482217 186482299 -10713133 + L1MA5A LINE L1 5855 5938 -359 8 2007 468 0 0 0 chr1 186482318 186482370 -10713062 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 2007 271 233 67 33 chr1 186482873 186482993 -10712439 - ERVL-E-int LTR ERVL -4037 1630 1507 8 2007 684 107 0 0 chr1 186483189 186483292 -10712140 + (GAA)n Simple_repeat Simple_repeat 2 104 0 8 2007 408 291 62 33 chr1 186483559 186483818 -10711614 - MLT1H2 LTR MaLR -230 319 57 8 2007 423 0 0 0 chr1 186483845 186483892 -10711540 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 2007 498 294 159 40 chr1 186483896 186484172 -10711260 + ORR1E LTR MaLR 43 351 -8 8 2007 1511 258 78 7 chr1 186484271 186484709 -10710723 + Lx8 LINE L1 6528 6996 -477 8 2007 519 17 0 0 chr1 186485141 186485201 -10710231 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 2007 462 36 0 0 chr1 186485210 186485266 -10710166 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 2007 880 243 32 16 chr1 186485278 186485525 -10709907 - Lx9 LINE L1 -171 7473 7223 8 2007 450 0 0 0 chr1 186485995 186486045 -10709387 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 8 2007 189 0 0 0 chr1 186486367 186486388 -10709044 + (T)n Simple_repeat Simple_repeat 1 21 0 8 2007 383 326 28 14 chr1 186487034 186487177 -10708255 + MIR SINE MIR 74 218 -44 8 2007 681 206 92 0 chr1 186488545 186488676 -10706756 + B1F SINE Alu 2 144 -5 8 2007 239 235 35 0 chr1 186488682 186488767 -10706665 + (TAAA)n Simple_repeat Simple_repeat 2 89 0 8 2007 443 254 51 22 chr1 186488789 186488926 -10706506 + ID_B1 SINE B4 78 218 -6 8 2007 754 142 79 0 chr1 186488803 186488930 -10706502 + B1_Mus2 SINE Alu 9 145 -2 8 2007 860 155 148 42 chr1 186489035 186489271 -10706161 - Lx4B LINE L1 -4 7054 6794 8 2007 500 244 311 0 chr1 186489819 186490028 -10705404 - B4A SINE B4 -18 274 1 8 2007 23 0 0 0 chr1 186492332 186492355 -10703077 + AT_rich Low_complexity Low_complexity 1 23 0 8 2007 186 43 0 0 chr1 186492880 186492903 -10702529 + (T)n Simple_repeat Simple_repeat 1 23 0 8 2007 782 57 0 0 chr1 186492903 186493009 -10702423 - B1_Mus2 SINE Alu 0 147 42 8 2007 979 162 0 12 chr1 186493009 186493171 -10702261 + (TCTCTG)n Simple_repeat Simple_repeat 5 164 0 8 2007 370 52 0 33 chr1 186493171 186493231 -10702201 - B1_Mus2 SINE Alu -88 59 2 8 2007 1058 228 5 18 chr1 186493322 186493541 -10701891 - B3 SINE B2 0 216 1 8 2007 242 226 129 0 chr1 186494803 186494865 -10700567 - MER105 DNA DNA -18 186 117 8 2007 197 330 52 26 chr1 186494990 186495105 -10700327 - L3 LINE CR1 -11 4478 4361 8 2007 944 82 47 13 chr1 186495309 186495458 -10699974 + B2_Mm2 SINE B2 42 195 0 8 2007 528 108 0 0 chr1 186495458 186495474 -10699958 + (A)n Simple_repeat Simple_repeat 1 16 0 8 2007 1133 83 0 0 chr1 186495474 186495619 -10699813 + B1_Mus2 SINE Alu 3 147 0 8 2007 528 108 0 0 chr1 186495619 186495685 -10699747 + (A)n Simple_repeat Simple_repeat 1 66 0 8 2007 340 161 85 11 chr1 186495869 186495963 -10699469 - Lx5 LINE L1 -1 7049 6949 8 2007 258 32 0 0 chr1 186496289 186496320 -10699112 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 8 2007 602 240 8 0 chr1 186497355 186497476 -10697956 + RSINE1 SINE B4 3 124 -41 8 2007 1155 80 0 0 chr1 186497477 186497714 -10697718 + (CA)n Simple_repeat Simple_repeat 1 237 0 8 2007 1333 103 16 0 chr1 186497777 186497961 -10697471 - B2_Mm2 SINE B2 -7 188 2 8 2007 519 219 17 17 chr1 186498011 186498127 -10697305 + ID_B1 SINE B4 108 223 -1 8 2007 1534 33 27 5 chr1 186498131 186498315 -10697117 + B2_Mm2 SINE B2 2 189 -6 8 2007 233 289 130 9 chr1 186498513 186498628 -10696804 - MLT1A1 LTR MaLR -279 129 1 8 2007 583 294 49 22 chr1 186498762 186498946 -10696486 + Lx8 LINE L1 7156 7344 -129 8 2007 364 319 7 40 chr1 186498946 186498958 -10696474 + ID_B1 SINE B4 78 217 -2 8 2007 625 227 15 8 chr1 186498958 186499091 -10696341 + B1_Mur1 SINE Alu 9 142 -7 8 2007 279 250 145 8 chr1 186499103 186499220 -10696212 + Lx8 LINE L1 7337 7469 -4 8 2007 277 275 0 12 chr1 186500018 186500099 -10695333 + Lx8 LINE L1 7197 7276 -197 1 2007 1154 210 37 75 chr1 186501541 186501835 -10693597 - B4 SINE B4 -7 285 3 2 2007 355 322 33 17 chr1 186502160 186502280 -10693152 + B4A SINE B4 1 122 -170 3 2007 231 248 51 68 chr1 186502315 186502432 -10693000 + MER101B LTR ERV1 253 367 -203 4 2007 1791 151 124 23 chr1 186502558 186502904 -10692528 - Lx5 LINE L1 0 7050 6670 5 2007 1228 187 10 0 chr1 186502912 186503121 -10692311 + Lx5 LINE L1 6148 6358 -692 6 2007 198 194 42 0 chr1 186503210 186503282 -10692150 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 2007 190 303 109 60 chr1 186503341 186503456 -10691976 + MIRc SINE MIR 65 182 -86 8 2007 29 60 0 0 chr1 186503905 186503955 -10691477 + AT_rich Low_complexity Low_complexity 1 50 0 9 2007 14904 67 14 14 chr1 186504062 186506812 -10688620 + L1VL2 LINE L1 246 2988 -627 1 2007 243 0 0 0 chr1 186506881 186506908 -10688524 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 2007 220 333 26 65 chr1 186507050 186507073 -10688359 + B4A SINE B4 66 85 -207 1 2007 250 381 21 0 chr1 186507073 186507170 -10688262 + B1F1 SINE Alu 3 101 -48 1 2007 249 33 0 0 chr1 186507170 186507200 -10688232 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 1 2007 704 204 74 42 chr1 186507274 186507463 -10687969 + B3A SINE B2 4 198 0 1 2007 638 309 85 30 chr1 186507971 186508241 -10687191 - B4A SINE B4 -6 286 2 1 2007 248 303 15 0 chr1 186508251 186508317 -10687115 + RMER30 DNA MER1_type 10 76 -126 1 2007 790 239 19 0 chr1 186508324 186508483 -10686949 + B3A SINE B2 11 172 -26 1 2007 222 128 0 0 chr1 186508508 186508547 -10686885 + (TGAG)n Simple_repeat Simple_repeat 1 39 0 1 2007 551 263 0 8 chr1 186508566 186508700 -10686732 + RMER30 DNA MER1_type 63 195 -7 1 2007 203 56 56 0 chr1 186508772 186508808 -10686624 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 2007 546 244 182 35 chr1 186508944 186509114 -10686318 + MTEb LTR MaLR 131 325 -54 2 2007 240 35 0 0 chr1 186509115 186509144 -10686288 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 2 2007 207 0 0 0 chr1 186509253 186509276 -10686156 + (G)n Simple_repeat Simple_repeat 1 23 0 2 2007 354 23 0 0 chr1 186509919 186509962 -10685470 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 2007 222 194 0 0 chr1 186509965 186510001 -10685431 - PB1D10 SINE Alu -36 81 46 2 2007 390 320 0 0 chr1 186510871 186510968 -10684464 + RMER12 LTR ERVK 760 856 -466 2 2007 287 300 61 91 chr1 186510921 186511083 -10684349 - RMER12 LTR ERVK -471 851 702 2 2007 1201 68 0 0 chr1 186511083 186511230 -10684202 - B1_Mus2 SINE Alu 0 147 1 2 2007 287 300 61 91 chr1 186511230 186511265 -10684167 - RMER12 LTR ERVK -621 701 661 2 2007 363 356 67 9 chr1 186513267 186513477 -10681955 + MIR SINE MIR 15 236 -26 2 2007 235 305 42 0 chr1 186513705 186513823 -10681609 - Lx7 LINE L1 -9 7687 7565 3 2007 312 120 0 0 chr1 186513875 186513925 -10681507 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 2007 285 214 167 11 chr1 186513932 186514022 -10681410 - Lx7 LINE L1 -272 7424 7321 3 2007 646 80 0 11 chr1 186514029 186514118 -10681314 - Lx5 LINE L1 -488 6562 6475 3 2007 820 129 0 0 chr1 186514112 186514228 -10681204 - Lx2B LINE L1 -1124 5876 5761 3 2007 1080 189 40 123 chr1 186514226 186514527 -10680905 + Lx5 LINE L1 6763 7038 -12 3 2007 294 29 0 0 chr1 186514527 186514562 -10680870 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 3 2007 1049 197 83 145 chr1 186514562 186514913 -10680519 - Lx7 LINE L1 -358 7338 7010 3 2007 510 0 43 0 chr1 186514914 186514984 -10680448 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 2008 621 252 75 0 chr1 186515692 186515839 -10679593 - RSINE1 SINE B4 -6 159 2 3 2008 500 311 45 47 chr1 186517201 186517481 -10677951 + B4 SINE B4 10 274 -18 3 2008 183 42 0 0 chr1 186517494 186517518 -10677914 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 2008 627 236 105 126 chr1 186517898 186517986 -10677446 + B4 SINE B4 9 95 -197 4 2008 1236 55 0 0 chr1 186517986 186518132 -10677300 + B1_Mm SINE Alu 2 147 0 4 2008 627 236 105 126 chr1 186518132 186518281 -10677151 + B4 SINE B4 96 241 -51 4 2008 222 160 0 0 chr1 186518295 186518345 -10677087 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 4 2008 515 231 0 8 chr1 186518352 186518593 -10676839 + (CA)n Simple_repeat Simple_repeat 1 238 0 4 2008 390 244 0 0 chr1 186518633 186518805 -10676627 + (CA)n Simple_repeat Simple_repeat 1 172 0 4 2008 216 0 0 0 chr1 186519392 186519416 -10676016 + (A)n Simple_repeat Simple_repeat 1 24 0 4 2008 227 371 33 22 chr1 186519505 186519596 -10675836 + MLT1L LTR MaLR 191 282 -328 4 2008 408 227 0 0 chr1 186519621 186519740 -10675692 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 2008 546 16 0 0 chr1 186520076 186520139 -10675293 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 2008 947 194 13 80 chr1 186520617 186520841 -10674591 + B3 SINE B2 2 210 -6 4 2008 1377 74 16 16 chr1 186520846 186521039 -10674393 + B2_Mm2 SINE B2 1 193 -2 4 2008 195 42 0 0 chr1 186521039 186521063 -10674369 + (GGGGA)n Simple_repeat Simple_repeat 5 28 0 5 2008 1338 73 0 0 chr1 186521065 186521244 -10674188 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 5 2008 509 294 62 28 chr1 186521320 186521665 -10673767 + L1M3 LINE L1 4478 4834 -1306 5 2008 338 167 91 0 chr1 186522186 186522252 -10673180 - ID4 SINE ID -9 74 3 5 2008 573 282 92 0 chr1 186522472 186522614 -10672818 + B3 SINE B2 2 156 -60 5 2008 326 333 20 0 chr1 186522867 186522966 -10672466 - MLT2B2 LTR ERVL -408 107 7 5 2008 231 288 91 55 chr1 186523121 186523231 -10672201 + PB1D7 SINE Alu 1 114 -6 5 2008 317 325 0 0 chr1 186523235 186523312 -10672120 + ID4 SINE ID 2 78 -5 5 2008 491 237 140 7 chr1 186523756 186523892 -10671540 + RSINE1 SINE B4 4 157 -8 5 2008 221 256 0 0 chr1 186523924 186523967 -10671465 + ID_B1 SINE B4 77 119 -105 5 2008 268 267 53 0 chr1 186524077 186524152 -10671280 + RSINE1 SINE B4 87 165 0 6 2008 525 217 9 28 chr1 186524327 186524436 -10670996 + PB1D10 SINE Alu 6 112 -5 6 2008 948 119 18 0 chr1 186524449 186524617 -10670815 + (GGAA)n Simple_repeat Simple_repeat 1 171 0 6 2008 354 23 0 0 chr1 186525771 186525814 -10669618 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 6 2008 542 224 161 5 chr1 186526344 186526520 -10668912 - MTD LTR MaLR -14 405 217 6 2008 1352 53 0 8 chr1 186526530 186526892 -10668540 + (TTC)n Simple_repeat Simple_repeat 1 358 0 6 2008 1313 78 0 6 chr1 186526905 186527241 -10668191 + (TTC)n Simple_repeat Simple_repeat 1 334 0 6 2008 1287 84 0 0 chr1 186527241 186527419 -10668013 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 6 2008 7519 69 11 1 chr1 186527430 186528389 -10667043 - L1_Mus3 LINE L1 -6 6632 5664 6 2008 3544 121 11 9 chr1 186528376 186528917 -10666515 + L1_Mus3 LINE L1 5087 5628 -255 6 2008 512 261 58 7 chr1 186528917 186529056 -10666376 - MTD LTR MaLR -192 227 82 6 2008 898 202 37 21 chr1 186529560 186529586 -10665846 - B2_Mm2 SINE B2 -1 194 169 6 2008 231 36 0 0 chr1 186529586 186529614 -10665818 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 2008 898 202 37 21 chr1 186529614 186529774 -10665658 - B2_Mm2 SINE B2 -27 168 5 6 2008 234 275 47 59 chr1 186529922 186530007 -10665425 + L2c LINE L2 2992 3075 -312 7 2008 441 54 0 0 chr1 186530653 186530709 -10664723 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 2008 186 43 0 0 chr1 186532259 186532282 -10663150 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 2008 1764 215 77 8 chr1 186533836 186534215 -10661217 - MTD LTR MaLR -14 405 1 7 2008 316 287 45 71 chr1 186534215 186534365 -10661067 + MLT1D LTR MaLR 40 185 -320 7 2008 819 271 47 33 chr1 186534369 186534583 -10660849 + B4A SINE B4 2 218 -74 7 2008 579 307 84 63 chr1 186534590 186534875 -10660557 + B4A SINE B4 2 292 0 7 2008 371 171 0 13 chr1 186534959 186535036 -10660396 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 2008 623 306 123 87 chr1 186535047 186535323 -10660109 + MLT1D LTR MaLR 175 498 -7 7 2008 446 306 0 7 chr1 186535566 186535701 -10659731 + ID_B1 SINE B4 86 219 -5 7 2008 470 229 49 8 chr1 186535582 186535705 -10659727 + B1F SINE Alu 21 148 -1 7 2008 259 324 0 38 chr1 186535707 186535758 -10659674 + polypurine Low_complexity Low_complexity 2 51 0 8 2008 700 231 37 16 chr1 186535758 186535947 -10659485 + B3A SINE B2 1 193 -5 8 2008 259 324 0 38 chr1 186535947 186536001 -10659431 + polypurine Low_complexity Low_complexity 52 103 0 8 2008 2194 159 131 33 chr1 186536065 186536546 -10658886 - RLTR11A LTR ERVK 0 528 1 8 2008 643 236 104 63 chr1 186536651 186536873 -10658559 - ORR1D2 LTR MaLR -138 232 2 8 2008 316 280 42 101 chr1 186537656 186537775 -10657657 - B3A SINE B2 -3 195 84 8 2008 231 277 36 12 chr1 186538111 186538195 -10657237 + CT-rich Low_complexity Low_complexity 2 87 0 8 2008 399 308 9 0 chr1 186538274 186538381 -10657051 - Lx8 LINE L1 -208 7265 7158 8 2008 644 225 100 11 chr1 186538673 186538853 -10656579 - B3A SINE B2 -2 196 1 8 2008 1107 201 123 103 chr1 186538887 186539090 -10656342 + Lx7 LINE L1 7178 7380 -316 8 2008 207 0 0 0 chr1 186539090 186539113 -10656319 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 2008 1107 201 123 103 chr1 186539113 186539414 -10656018 + Lx7 LINE L1 7381 7692 -4 8 2008 403 317 83 73 chr1 186539594 186539798 -10655634 - ID_B1 SINE B4 -1 223 18 9 2008 396 197 157 33 chr1 186540007 186540128 -10655304 - Charlie1 DNA MER1_type -2637 144 9 9 2008 483 202 134 0 chr1 186540911 186541030 -10654402 + ID_B1 SINE B4 67 201 -23 9 2008 279 0 0 0 chr1 186541449 186541480 -10653952 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 2008 459 52 0 0 chr1 186541488 186541546 -10653886 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 2008 184 262 111 12 chr1 186541551 186541632 -10653800 + MIRc SINE MIR 63 151 -117 9 2008 603 0 0 0 chr1 186543140 186543207 -10652225 + (GA)n Simple_repeat Simple_repeat 2 68 0 9 2008 398 228 0 56 chr1 186543332 186543439 -10651993 - PB1D10 SINE Alu 0 117 17 9 2008 252 0 0 0 chr1 186543654 186543682 -10651750 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 2008 289 298 0 0 chr1 186545725 186545782 -10649650 + ID2 SINE ID 23 79 -4 1 2008 378 61 0 0 chr1 186545787 186545836 -10649596 + (CCA)n Simple_repeat Simple_repeat 1 49 0 1 2008 372 119 0 0 chr1 186546555 186546614 -10648818 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 1 2008 188 357 43 43 chr1 186547248 186547365 -10648067 + MIR3 SINE MIR 38 154 -54 1 2008 378 0 0 0 chr1 186548396 186548438 -10646994 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 2008 456 135 0 0 chr1 186549997 186550071 -10645361 + (CTG)n Simple_repeat Simple_repeat 1 74 0 1 2008 442 76 0 60 chr1 186550089 186550173 -10645259 + L1Md_F2 LINE L1 6492 6570 -12 1 2008 217 277 0 0 chr1 186551512 186551577 -10643855 + (CTG)n Simple_repeat Simple_repeat 1 65 0 1 2008 401 280 20 0 chr1 186552331 186552431 -10643001 - PB1D10 SINE Alu -7 110 9 1 2008 966 69 0 0 chr1 186552955 186553099 -10642333 + (GA)n Simple_repeat Simple_repeat 1 144 0 1 2008 477 0 0 0 chr1 186554264 186554317 -10641115 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 2008 23 33 0 0 chr1 186556228 186556258 -10639174 + GC_rich Low_complexity Low_complexity 1 30 0 1 2008 351 78 0 0 chr1 186556420 186556471 -10638961 + (A)n Simple_repeat Simple_repeat 1 51 0 1 2008 1044 139 0 0 chr1 186558655 186558827 -10636605 + (GGAGA)n Simple_repeat Simple_repeat 2 173 0 1 2008 279 0 0 0 chr1 186559993 186560024 -10635408 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 2008 528 30 0 0 chr1 186560609 186560675 -10634757 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 2008 632 232 8 16 chr1 186561224 186561351 -10634081 + ORR1E LTR MaLR 7 132 -227 1 2008 978 121 35 0 chr1 186561351 186561492 -10633940 + B1_Mus1 SINE Alu 2 147 -1 1 2008 667 131 16 8 chr1 186561493 186561616 -10633816 + GA-rich Low_complexity Low_complexity 3 126 0 1 2008 21 0 0 0 chr1 186561658 186561679 -10633753 + AT_rich Low_complexity Low_complexity 1 21 0 1 2008 22 0 0 0 chr1 186561769 186561791 -10633641 + GC_rich Low_complexity Low_complexity 1 22 0 1 2008 335 183 0 16 chr1 186562245 186562306 -10633126 - MIRc SINE MIR -135 133 74 1 2008 275 0 29 0 chr1 186562446 186562481 -10632951 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 2008 725 353 93 21 chr1 186562774 186563186 -10632246 + Tigger7 DNA MER2_type 7 484 -221 1 2008 636 87 0 0 chr1 186563919 186564011 -10631421 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 2008 724 276 123 52 chr1 186564030 186564298 -10631134 - B4A SINE B4 0 292 6 1 2008 486 281 56 66 chr1 186564539 186564752 -10630680 + ID_B1 SINE B4 2 212 -12 1 2008 1187 49 7 0 chr1 186564808 186564952 -10630480 - B1_Mm SINE Alu -1 146 2 1 2008 807 108 0 0 chr1 186565040 186565160 -10630272 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 2008 544 274 0 46 chr1 186565160 186565290 -10630142 - RSINE1 SINE B4 -41 124 1 1 2008 530 253 126 45 chr1 186565376 186565568 -10629864 + B3 SINE B2 2 210 -6 1 2008 294 29 0 0 chr1 186565568 186565603 -10629829 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 2008 21 36 0 0 chr1 186565647 186565675 -10629757 + AT_rich Low_complexity Low_complexity 1 28 0 1 2008 3091 196 81 42 chr1 186565739 186566505 -10628927 + Lx7 LINE L1 6901 7696 0 1 2008 1327 88 5 32 chr1 186566683 186566872 -10628560 - B2_Mm1t SINE B2 -8 185 2 1 2008 267 319 115 31 chr1 186567325 186567353 -10628079 - L2a LINE L2 -5 3421 3398 1 2008 353 75 0 19 chr1 186567353 186567407 -10628025 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1 2008 267 319 115 31 chr1 186567407 186567569 -10627863 - L2a LINE L2 -29 3397 3216 1 2008 853 288 26 18 chr1 186567919 186568145 -10627287 + B4A SINE B4 2 229 -63 1 2008 588 234 7 42 chr1 186568140 186568283 -10627149 + B1_Mur1 SINE Alu 11 148 -1 1 2008 448 276 18 127 chr1 186568283 186568360 -10627072 + B4A SINE B4 96 291 -1 1 2008 252 86 0 0 chr1 186568371 186568406 -10627026 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 2008 203 147 0 0 chr1 186568410 186568444 -10626988 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1 2008 440 232 50 0 chr1 186569077 186569176 -10626256 + B1_Mur2 SINE Alu 2 105 -44 1 2008 612 284 118 24 chr1 186569176 186569527 -10625905 + L1M4 LINE L1 4769 5170 -976 1 2008 557 134 205 25 chr1 186569527 186569649 -10625783 + B1_Mus1 SINE Alu 1 144 -4 1 2008 612 284 118 24 chr1 186569649 186569758 -10625674 + L1M4 LINE L1 5171 5275 -871 1 2008 431 308 24 36 chr1 186569758 186569923 -10625509 + RSINE1 SINE B4 3 165 0 1 2008 612 284 118 24 chr1 186569923 186569969 -10625463 + L1M4 LINE L1 5276 5322 -824 1 2008 260 262 116 33 chr1 186569968 186570128 -10625304 + L1M3 LINE L1 5264 5439 -732 1 2008 378 0 0 0 chr1 186570990 186571032 -10624400 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1 2008 27 0 0 0 chr1 186571415 186571442 -10623990 + AT_rich Low_complexity Low_complexity 1 27 0 1 2008 499 108 21 0 chr1 186571501 186571594 -10623838 + (TG)n Simple_repeat Simple_repeat 1 95 0 1 2008 701 302 99 26 chr1 186571636 186571908 -10623524 - B4A SINE B4 0 292 1 1 2008 578 286 21 0 chr1 186571920 186572060 -10623372 - B1F SINE Alu -3 146 4 1 2008 1151 93 0 6 chr1 186572230 186572402 -10623030 + (TCCCC)n Simple_repeat Simple_repeat 4 174 0 1 2008 580 254 8 0 chr1 186573365 186573495 -10621937 + ID_B1 SINE B4 3 133 -91 1 2008 312 27 0 0 chr1 186573523 186573560 -10621872 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 2008 234 0 0 0 chr1 186573560 186573585 -10621847 + (TTAAA)n Simple_repeat Simple_repeat 1 26 0 1 2008 526 322 35 57 chr1 186574602 186574829 -10620603 + MLT1E1A LTR MaLR 63 284 -396 1 2008 606 304 0 0 chr1 186574829 186574987 -10620445 + MTEa LTR MaLR 1 158 -221 1 2008 298 251 7 18 chr1 186574996 186575069 -10620363 + RSINE1 SINE B4 1 74 -218 1 2008 432 0 0 0 chr1 186575120 186575168 -10620264 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 2008 776 230 64 20 chr1 186575187 186575391 -10620041 + MTEa LTR MaLR 166 378 -1 1 2008 246 367 41 8 chr1 186575403 186575524 -10619908 - MLT1C LTR MaLR -6 461 337 1 2008 1887 143 71 3 chr1 186575503 186575811 -10619621 + RMER19B LTR ERVK 574 902 0 1 2008 449 226 158 0 chr1 186575848 186575981 -10619451 - Lx8 LINE L1 -358 7115 6962 1 2008 665 302 29 19 chr1 186575985 186576184 -10619248 - Lx8 LINE L1 -756 6717 6516 1 2008 279 0 0 0 chr1 186576191 186576222 -10619210 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 2008 914 155 0 21 chr1 186576222 186576359 -10619073 - B1_Mur3 SINE Alu -11 138 2 1 2008 184 300 100 0 chr1 186576410 186576490 -10618942 + MIRc SINE MIR 63 150 -118 1 2008 316 309 50 20 chr1 186576492 186576591 -10618841 + ID_B1 SINE B4 78 179 -45 1 2008 470 230 48 39 chr1 186576509 186576613 -10618819 + PB1D10 SINE Alu 13 117 0 1 2008 22 0 0 0 chr1 186576617 186576639 -10618793 + AT_rich Low_complexity Low_complexity 1 22 0 1 2008 1335 256 111 16 chr1 186576835 186577212 -10618220 - Lx8 LINE L1 0 7473 7061 1 2008 544 16 0 0 chr1 186577212 186577274 -10618158 + (TTC)n Simple_repeat Simple_repeat 1 62 0 1 2008 1536 22 0 0 chr1 186577274 186577454 -10617978 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 2008 1277 88 9 0 chr1 186577457 186577684 -10617748 + (TCC)n Simple_repeat Simple_repeat 1 228 0 1 2008 787 273 144 25 chr1 186577687 186577876 -10617556 - Lx8 LINE L1 -441 7032 6811 1 2008 1682 176 95 17 chr1 186577876 186578093 -10617339 + ORR1D1 LTR MaLR 1 228 -146 1 2008 249 57 0 0 chr1 186578093 186578128 -10617304 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 1 2008 1682 176 95 17 chr1 186578128 186578256 -10617176 + ORR1D1 LTR MaLR 229 373 -1 1 2008 787 273 144 25 chr1 186578256 186578344 -10617088 - Lx8 LINE L1 -663 6810 6722 1 2008 3390 45 5 0 chr1 186578935 186579333 -10616099 - MTB LTR MaLR 0 400 1 1 2008 2857 3 0 0 chr1 186581608 186581920 -10613512 - L1Md_T LINE L1 0 6582 6271 1 2008 322 348 50 37 chr1 186581925 186582143 -10613289 - L1MC4 LINE L1 -6 8036 7816 1 2008 1025 173 73 48 chr1 186582154 186582186 -10613246 + B3 SINE B2 6 40 -176 1 2008 1445 73 16 0 chr1 186582186 186582377 -10613055 - B2_Mm2 SINE B2 -1 194 1 1 2008 928 94 129 25 chr1 186582382 186582545 -10612887 - B2_Mm2 SINE B2 -11 184 5 1 2008 1025 180 65 71 chr1 186582545 186582738 -10612694 + B3 SINE B2 46 215 -1 1 2008 807 208 0 39 chr1 186582737 186582892 -10612540 + B1_Mur1 SINE Alu 1 149 0 1 2008 306 282 97 0 chr1 186583193 186583317 -10612115 - L1MC4 LINE L1 -406 7636 7501 1 2008 881 223 67 34 chr1 186583324 186583533 -10611899 - B3 SINE B2 0 216 1 1 2008 290 286 159 13 chr1 186583689 186583912 -10611520 - L1MC4 LINE L1 -1146 6849 6597 1 2008 251 336 109 0 chr1 186583995 186584114 -10611318 - L1MC4 LINE L1 -1292 6590 6459 1 2008 230 315 36 24 chr1 186584153 186584319 -10611113 - L1ME1 LINE L1 -266 6178 6011 1 2008 343 296 119 6 chr1 186584404 186584621 -10610811 - L1ME1 LINE L1 -262 5900 5661 1 2008 432 243 192 42 chr1 186584621 186584814 -10610618 - L1ME1 LINE L1 -2922 3224 3003 1 2008 367 227 34 11 chr1 186585057 186585126 -10610306 - ID_B1 SINE B4 -2 222 153 1 2008 216 0 0 0 chr1 186585126 186585150 -10610282 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1 2008 367 227 34 11 chr1 186585150 186585169 -10610263 - ID_B1 SINE B4 -72 152 132 1 2008 1119 98 0 0 chr1 186585173 186585336 -10610096 + (TTC)n Simple_repeat Simple_repeat 2 164 0 1 2008 324 0 0 0 chr1 186585336 186585372 -10610060 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 2008 246 324 77 77 chr1 186585853 186586047 -10609385 - MT2B2 LTR ERVL -216 368 175 1 2008 602 291 65 16 chr1 186585950 186586135 -10609297 - ID_B1 SINE B4 -29 195 2 1 2008 572 267 54 80 chr1 186586137 186586343 -10609089 - L1ME1 LINE L1 -3442 2704 2512 1 2008 357 24 0 0 chr1 186586343 186586385 -10609047 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1 2008 572 267 54 80 chr1 186586385 186586565 -10608867 - L1ME1 LINE L1 -3635 2511 2328 1 2008 189 0 0 0 chr1 186587777 186587798 -10607634 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 2008 251 292 129 15 chr1 186588276 186588408 -10607024 - MIR3 SINE MIR -25 183 37 1 2008 225 0 0 0 chr1 186588412 186588437 -10606995 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1 2008 2174 109 42 20 chr1 186588445 186588801 -10606631 - Lx LINE L1 -28 6626 6263 1 2008 4283 74 30 19 chr1 186588942 186589534 -10605898 - L1_Mus3 LINE L1 -2 6636 6038 1 2008 321 26 0 0 chr1 186589542 186589580 -10605852 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1 2008 676 282 90 24 chr1 186589621 186589832 -10605600 - B4A SINE B4 -22 270 46 1 2008 288 176 0 0 chr1 186590162 186590213 -10605219 + PB1D9 SINE Alu 17 67 -53 1 2008 2497 60 6 0 chr1 186590205 186590520 -10604912 + ORR1A2 LTR MaLR 11 327 0 1 2008 416 250 11 22 chr1 186590520 186590605 -10604827 + B1_Mur1 SINE Alu 54 137 -12 2 2008 207 125 0 0 chr1 186590606 186590646 -10604786 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 2008 306 73 0 0 chr1 186590646 186590687 -10604745 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 2 2008 342 0 0 0 chr1 186591022 186591060 -10604372 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2008 665 230 0 28 chr1 186591063 186591206 -10604226 - RSINE1 SINE B4 -24 141 3 2 2008 970 324 170 9 chr1 186591342 186591778 -10603654 + MLT2B2 LTR ERVL 9 514 -1 2 2008 195 125 0 0 chr1 186592520 186592560 -10602872 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 2008 1053 126 38 21 chr1 186593467 186593653 -10601779 - B2_Mm2 SINE B2 -6 189 1 2 2008 180 346 68 19 chr1 186594250 186594353 -10601079 - MIRb SINE MIR -52 216 109 2 2008 234 284 81 0 chr1 186594638 186594712 -10600720 - ID4_ SINE ID -3 80 1 2 2008 244 304 0 0 chr1 186596495 186596551 -10598881 + RSINE1 SINE B4 2 57 -108 2 2008 366 307 74 69 chr1 186596858 186597089 -10598343 - MER33 DNA MER1_type -55 269 38 2 2008 474 326 15 8 chr1 186597157 186597290 -10598142 + RSINE1 SINE B4 3 136 -29 2 2008 1749 199 52 23 chr1 186597459 186597845 -10597587 - MTD LTR MaLR -1 418 22 2 2008 417 39 0 0 chr1 186597848 186597899 -10597533 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 2008 849 277 19 12 chr1 186597922 186598134 -10597298 + ID_B1 SINE B4 30 237 -55 2 2008 297 0 0 0 chr1 186598218 186598251 -10597181 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 2008 383 320 90 77 chr1 186598734 186599099 -10596333 - ORR1D2 LTR MaLR 0 370 1 2 2008 607 257 13 34 chr1 186599261 186599410 -10596022 + B4 SINE B4 66 211 -81 2 2008 447 327 0 75 chr1 186599397 186599594 -10595838 + B3A SINE B2 7 180 -36 2 2008 213 39 0 0 chr1 186599693 186599719 -10595713 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 2008 232 289 91 13 chr1 186601407 186601484 -10593948 + MIRc SINE MIR 41 123 -145 2 2008 22 56 0 0 chr1 186601772 186601808 -10593624 + AT_rich Low_complexity Low_complexity 1 36 0 2 2008 1622 114 133 0 chr1 186601809 186602080 -10593352 - Lx4A LINE L1 -2 7056 6750 2 2008 1035 270 6 120 chr1 186602097 186602264 -10593168 - ORR1D2 LTR MaLR -6 364 197 2 2008 408 20 0 0 chr1 186602264 186602313 -10593119 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 2008 1035 270 6 120 chr1 186602313 186602330 -10593102 - ORR1D2 LTR MaLR -174 196 196 2 2008 765 130 106 0 chr1 186602330 186602453 -10592979 - B1_Mur3 SINE Alu -13 136 1 2 2008 1035 275 23 114 chr1 186602453 186602628 -10592804 - ORR1D2 LTR MaLR -174 196 1 2 2008 247 299 0 15 chr1 186602791 186602859 -10592573 + GA-rich Low_complexity Low_complexity 4 70 0 2 2008 254 150 0 0 chr1 186603219 186603259 -10592173 + RSINE1 SINE B4 2 41 -124 2 2008 226 0 59 0 chr1 186603293 186603327 -10592105 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 2 2008 1466 247 78 16 chr1 186603338 186603724 -10591708 + MTD LTR MaLR 3 412 -7 2 2008 245 369 8 47 chr1 186603737 186603865 -10591567 + RSINE1 SINE B4 43 165 0 2 2008 342 156 0 0 chr1 186604439 186604503 -10590929 + CT-rich Low_complexity Low_complexity 2 65 0 2 2008 633 273 84 49 chr1 186604605 186604952 -10590480 - L1MB2 LINE L1 -118 6053 5695 2 2008 905 191 157 16 chr1 186607077 186607268 -10588164 + ID_B1 SINE B4 1 218 -6 2 2008 730 21 21 0 chr1 186607268 186607364 -10588068 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 2 2008 339 284 18 9 chr1 186607451 186607561 -10587871 + PB1D10 SINE Alu 1 111 -6 2 2008 493 134 10 20 chr1 186607576 186607675 -10587757 + GA-rich Low_complexity Low_complexity 6 103 0 2 2008 203 0 37 0 chr1 186608057 186608084 -10587348 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 2 2008 287 298 11 45 chr1 186608195 186608283 -10587149 + Tigger5 DNA MER2_type 1 85 -2321 2 2008 429 258 99 192 chr1 186608292 186608614 -10586818 + B4A SINE B4 1 292 0 2 2008 412 306 7 50 chr1 186608620 186608653 -10586779 - B1F1 SINE Alu -14 135 105 2 2008 844 233 66 135 chr1 186608653 186609060 -10586372 + MTE2a LTR MaLR 1 379 0 2 2008 412 306 7 50 chr1 186609060 186609167 -10586265 - B1F1 SINE Alu -45 104 1 2 2008 432 253 33 0 chr1 186609862 186609953 -10585479 + RSINE1 SINE B4 48 141 -24 2 2008 223 148 0 69 chr1 186610046 186610083 -10585349 + A-rich Low_complexity Low_complexity 3 36 0 2 2008 1092 54 0 120 chr1 186610083 186610250 -10585182 + B1_Mus2 SINE Alu 1 147 0 2 2008 223 148 0 69 chr1 186610250 186610270 -10585162 + A-rich Low_complexity Low_complexity 37 56 0 2 2008 1009 84 0 40 chr1 186610281 186610430 -10585002 - B1_Mus1 SINE Alu 0 148 6 2 2008 183 42 0 0 chr1 186610698 186610722 -10584710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 2008 248 279 55 46 chr1 186611461 186611570 -10583862 + LTR82A LTR ERVL 593 702 -170 2 2008 766 261 14 28 chr1 186611994 186612207 -10583225 + B3 SINE B2 1 210 -6 2 2008 201 242 0 0 chr1 186612212 186612274 -10583158 + A-rich Low_complexity Low_complexity 1 62 0 2 2008 702 244 90 15 chr1 186612656 186612856 -10582576 - B3 SINE B2 -1 215 1 2 2008 1265 83 5 32 chr1 186612942 186613128 -10582304 + B2_Mm2 SINE B2 1 181 -14 2 2008 456 19 0 0 chr1 186613128 186613181 -10582251 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 2 2008 224 346 76 66 chr1 186613380 186613683 -10581749 + L2b LINE L2 3070 3375 0 2 2008 426 200 13 0 chr1 186613721 186613796 -10581636 + PB1D10 SINE Alu 25 100 -17 2 2008 281 300 22 0 chr1 186614110 186614200 -10581232 - 4.5SRNA scRNA scRNA -2 92 1 2 2008 376 278 156 31 chr1 186614231 186614391 -10581041 - ID_B1 SINE B4 -9 215 36 2 2008 669 155 0 0 chr1 186614442 186614571 -10580861 + (TGGA)n Simple_repeat Simple_repeat 1 129 0 2 2008 672 107 0 0 chr1 186615253 186615374 -10580058 + (TC)n Simple_repeat Simple_repeat 2 122 0 2 2008 255 238 0 12 chr1 186615375 186615456 -10579976 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 2008 225 340 29 20 chr1 186615482 186615584 -10579848 - ID_B1 SINE B4 -116 108 6 2 2008 504 216 26 17 chr1 186615631 186615748 -10579684 - B1F SINE Alu -9 140 24 2 2008 225 246 108 14 chr1 186615885 186615959 -10579473 + ID4 SINE ID 2 82 -1 2 2008 687 97 39 10 chr1 186616339 186616443 -10578989 + B2_Mm2 SINE B2 1 107 -88 2 2008 198 0 0 0 chr1 186616444 186616466 -10578966 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 2 2008 235 222 0 0 chr1 186616674 186616737 -10578695 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 2 2008 777 217 17 94 chr1 186616737 186616971 -10578461 + B3 SINE B2 1 216 0 2 2008 180 0 0 0 chr1 186616984 186617004 -10578428 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 2008 425 249 20 83 chr1 186617792 186617920 -10577512 + PB1 SINE Alu 1 125 -2 2 2008 439 216 57 29 chr1 186617919 186618024 -10577408 + B3A SINE B2 9 116 -82 2 2008 292 173 55 110 chr1 186618023 186618114 -10577318 + 4.5SRNA scRNA scRNA 1 86 -8 2 2008 1054 79 0 0 chr1 186618033 186618172 -10577260 + B1_Mm SINE Alu 9 147 0 2 2008 180 0 0 0 chr1 186618172 186618192 -10577240 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 2 2008 350 227 0 15 chr1 186618192 186618259 -10577173 + B3A SINE B2 100 165 -33 2 2008 279 0 0 0 chr1 186618260 186618291 -10577141 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 2008 1158 122 0 0 chr1 186618308 186618488 -10576944 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 2008 348 203 54 0 chr1 186618515 186618589 -10576843 + ID4_ SINE ID 3 80 -3 2 2008 207 288 17 17 chr1 186618693 186618753 -10576679 + L4 LINE RTE 628 687 -1342 2 2008 295 300 19 57 chr1 186618864 186618970 -10576462 - Tigger7 DNA MER2_type -7 2484 2383 2 2008 185 163 20 0 chr1 186619242 186619291 -10576141 + C-rich Low_complexity Low_complexity 1 50 0 2 2008 545 211 26 60 chr1 186619607 186619758 -10575674 + B1_Mur3 SINE Alu 3 148 -1 2 2008 696 237 6 37 chr1 186619771 186619933 -10575499 + B3A SINE B2 36 192 -6 2 2008 484 186 167 9 chr1 186619957 186620071 -10575361 + B1_Mur1 SINE Alu 4 135 -14 2 2008 288 77 0 0 chr1 186620109 186620148 -10575284 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 2008 610 47 23 0 chr1 186620734 186620820 -10574612 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 2008 237 185 25 188 chr1 186620838 186620918 -10574514 + B1_Mur3 SINE Alu 70 136 -13 2 2008 198 0 0 0 chr1 186620919 186620941 -10574491 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 2008 3703 144 62 85 chr1 186621106 186621880 -10573552 + RMER6A LTR ERVK 1 756 0 2 2008 621 303 26 7 chr1 186621940 186622093 -10573339 + RSINE1 SINE B4 3 158 -7 2 2008 414 0 0 0 chr1 186622093 186622139 -10573293 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 2008 7481 55 6 5 chr1 186622460 186623867 -10571565 - L1Md_F2 LINE L1 0 6582 5174 2 2008 711 268 15 20 chr1 186623868 186624070 -10571362 - RCHARR1 DNA MER1_type -22 952 752 2 2008 1131 254 135 6 chr1 186624067 186624391 -10571041 - RCHARR1 DNA MER1_type -505 469 101 2 2008 826 217 290 0 chr1 186624391 186624586 -10570846 - ORR1D2 LTR MaLR 0 370 103 2 2008 2228 76 74 16 chr1 186624586 186624895 -10570537 + ORR1A2 LTR MaLR 1 327 0 2 2008 826 217 290 0 chr1 186624895 186624985 -10570447 - ORR1D2 LTR MaLR -268 102 3 2 2008 623 221 16 0 chr1 186625588 186625710 -10569722 - ID_B1 SINE B4 -2 222 99 2 2008 324 296 56 51 chr1 186625591 186625769 -10569663 + YREP_Mm Unknown Unknown 183 361 -1451 2 2008 423 0 0 0 chr1 186626072 186626119 -10569313 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 2008 207 0 0 0 chr1 186626177 186626200 -10569232 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 2008 1093 88 0 0 chr1 186626200 186626337 -10569095 - B1_Mus2 SINE Alu -9 138 2 3 2008 1009 221 30 0 chr1 186626382 186626581 -10568851 + B3 SINE B2 1 205 -11 3 2008 207 69 0 0 chr1 186626581 186626610 -10568822 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 2008 1051 92 169 7 chr1 186626666 186626820 -10568612 + B2_Mm2 SINE B2 3 181 -14 3 2008 1005 173 11 11 chr1 186626847 186627034 -10568398 + B2_Mm2 SINE B2 1 187 -8 3 2008 195 69 0 0 chr1 186627187 186627216 -10568216 + (T)n Simple_repeat Simple_repeat 1 29 0 3 2008 858 163 0 7 chr1 186628201 186628343 -10567089 - B1_Mus2 SINE Alu -1 146 6 3 2008 2248 207 19 95 chr1 186628520 186628994 -10566438 + RLTR20C LTR ERVK 1 432 -102 3 2008 372 22 0 0 chr1 186628994 186629039 -10566393 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 2008 2248 207 19 95 chr1 186629039 186629051 -10566381 + RLTR20C LTR ERVK 433 444 -90 3 2008 210 71 0 0 chr1 186629051 186629079 -10566353 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 3 2008 2248 207 19 95 chr1 186629079 186629169 -10566263 + RLTR20C LTR ERVK 445 533 -1 3 2008 188 61 0 57 chr1 186629246 186629281 -10566151 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 3 2008 450 222 0 0 chr1 186629282 186629363 -10566069 - ID4_ SINE ID -1 82 2 3 2008 439 209 11 0 chr1 186629381 186629472 -10565960 - PB1D10 SINE Alu -5 112 21 3 2008 210 71 0 0 chr1 186629496 186629524 -10565908 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 2008 921 154 0 0 chr1 186629526 186629662 -10565770 - B1_Mur3 SINE Alu -13 136 1 3 2008 22 70 0 0 chr1 186629670 186629713 -10565719 + AT_rich Low_complexity Low_complexity 1 43 0 3 2008 409 212 0 24 chr1 186630136 186630218 -10565214 - ID4 SINE ID 0 83 4 3 2008 946 274 9 24 chr1 186630404 186630617 -10564815 - ID_B1 SINE B4 -13 211 2 3 2008 279 54 0 0 chr1 186630738 186630775 -10564657 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 2008 180 77 0 0 chr1 186631141 186631167 -10564265 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 2008 323 274 327 0 chr1 186631595 186631757 -10563675 - B3A SINE B2 -1 215 1 3 2008 966 246 92 30 chr1 186631920 186632014 -10563418 - MTD LTR MaLR -100 307 219 3 2008 222 37 0 0 chr1 186632014 186632041 -10563391 + (CCCTG)n Simple_repeat Simple_repeat 2 28 0 3 2008 966 204 125 6 chr1 186632041 186632236 -10563196 - MTD LTR MaLR -186 233 14 3 2008 734 286 90 21 chr1 186632702 186633124 -10562308 - L1MB4 LINE L1 -88 6092 5642 3 2008 215 0 0 62 chr1 186635229 186635261 -10560171 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 3 2008 269 300 53 79 chr1 186635709 186635861 -10559571 - MER31B LTR ERV1 -48 418 271 3 2008 311 179 210 59 chr1 186636164 186636283 -10559149 + MTE-int LTR MaLR 880 1016 -564 3 2008 332 262 110 39 chr1 186636337 186636464 -10558968 + ORR1E LTR MaLR 7 142 -217 3 2008 1059 128 191 0 chr1 186636661 186636849 -10558583 - URR1A DNA MER1_type 0 226 3 3 2008 647 253 20 0 chr1 186640115 186640261 -10555171 - B1_Mur2 SINE Alu 0 149 1 3 2008 396 0 0 0 chr1 186640291 186640335 -10555097 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 2008 387 0 0 0 chr1 186640335 186640377 -10555055 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 2008 673 228 6 90 chr1 186640384 186640445 -10554987 - RSINE1 SINE B4 0 165 114 3 2008 1427 84 10 16 chr1 186640445 186640639 -10554793 + B2_Mm2 SINE B2 1 193 -2 3 2008 673 228 6 90 chr1 186640639 186640755 -10554677 - RSINE1 SINE B4 -52 113 3 3 2008 964 138 7 14 chr1 186640858 186641005 -10554427 + B1_Mus2 SINE Alu 2 147 0 3 2008 994 191 143 0 chr1 186641740 186641929 -10553503 + B3 SINE B2 1 216 0 3 2008 336 77 0 0 chr1 186642213 186642265 -10553167 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 2008 948 144 20 0 chr1 186642323 186642469 -10552963 - B1_Mur3 SINE Alu 0 149 1 3 2008 699 156 18 9 chr1 186642645 186642755 -10552677 + PB1D9 SINE Alu 1 111 -9 3 2008 198 0 0 0 chr1 186642755 186642777 -10552655 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 2008 1042 185 29 29 chr1 186642788 186642994 -10552438 + B3 SINE B2 10 215 -1 3 2008 1031 121 0 14 chr1 186643379 186643522 -10551910 + B1_Mus2 SINE Alu 1 141 -6 3 2008 979 276 50 111 chr1 186643645 186643972 -10551460 + MTE2a LTR MaLR 1 314 -65 3 2008 216 0 0 0 chr1 186643979 186644003 -10551429 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 2008 1266 27 0 7 chr1 186644003 186644142 -10551290 - B1_Mus1 SINE Alu -9 139 1 3 2008 979 276 50 111 chr1 186644142 186644218 -10551214 + MTE2a LTR MaLR 315 379 0 3 2008 627 255 146 5 chr1 186644575 186644780 -10550652 + B4A SINE B4 1 234 -58 3 2008 910 136 204 28 chr1 186645326 186645507 -10549925 + B3 SINE B2 4 216 0 3 2008 271 288 0 12 chr1 186645546 186645627 -10549805 + B4A SINE B4 213 292 0 3 2008 759 204 3 0 chr1 186645639 186645982 -10549450 + (CA)n Simple_repeat Simple_repeat 1 344 0 3 31 543 31 0 0 chr1 186646518 186646583 -10548849 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 2009 511 177 194 109 chr1 186646941 186647106 -10548326 + URR1B DNA MER1_type 9 187 -38 3 2009 224 313 57 57 chr1 186647094 186647216 -10548216 - B4A SINE B4 -166 126 5 3 2009 264 292 0 14 chr1 186647326 186647399 -10548033 - MER34 LTR ERV1 -165 377 306 3 2009 636 106 0 0 chr1 186647415 186647509 -10547923 + (GGGA)n Simple_repeat Simple_repeat 3 96 0 3 2009 215 300 10 118 chr1 186647770 186647872 -10547560 + B1F2 SINE Alu 1 91 -58 3 2009 659 228 83 39 chr1 186649364 186649569 -10545863 - B3 SINE B2 0 216 3 3 2009 871 286 93 36 chr1 186649836 186650279 -10545153 + RLTR12B LTR ERVK 47 514 -14 3 2009 21 0 0 0 chr1 186652089 186652110 -10543322 + AT_rich Low_complexity Low_complexity 1 21 0 3 2009 21 0 0 0 chr1 186652188 186652209 -10543223 + AT_rich Low_complexity Low_complexity 1 21 0 3 2009 1300 241 131 21 chr1 186652215 186652588 -10542844 + MTD LTR MaLR 6 419 0 3 2009 235 338 0 24 chr1 186652715 186652797 -10542635 - ID4_ SINE ID -2 81 2 3 2009 533 280 119 0 chr1 186652844 186653037 -10542395 - B3 SINE B2 0 216 1 3 2009 557 173 110 0 chr1 186653047 186653174 -10542258 - B1F2 SINE Alu -8 141 1 3 2009 256 306 113 94 chr1 186653304 186653463 -10541969 + Arthur1A DNA Tip100 15 176 -1 3 2009 585 255 18 137 chr1 186654147 186654374 -10541058 + MTE2a LTR MaLR 31 230 -149 3 2009 234 280 69 88 chr1 186654443 186654545 -10540887 + MTE2a LTR MaLR 227 326 -53 3 2009 1298 54 60 6 chr1 186654717 186654884 -10540548 - B2_Mm2 SINE B2 -19 176 1 3 2009 216 0 0 0 chr1 186654894 186654918 -10540514 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 2009 985 266 99 39 chr1 186654980 186655312 -10540120 + ORR1E LTR MaLR 1 352 -7 3 2009 1050 130 171 5 chr1 186655440 186655633 -10539799 - URR1B DNA MER1_type 0 225 1 3 2009 624 236 21 28 chr1 186656797 186656941 -10538491 - B1_Mur2 SINE Alu -3 146 4 3 2009 195 268 43 85 chr1 186657028 186657122 -10538310 - L2a LINE L2 -3 3423 3334 3 2009 501 273 7 70 chr1 186657324 186657466 -10537966 - B1F SINE Alu -16 133 1 3 2009 219 204 20 39 chr1 186658017 186658068 -10537364 - ID_B1 SINE B4 -92 132 83 3 2009 435 312 34 14 chr1 186658413 186658559 -10536873 - B1F SINE Alu 0 149 1 3 2009 1275 65 0 0 chr1 186658569 186658769 -10536663 + (TTCC)n Simple_repeat Simple_repeat 1 200 0 3 2009 396 298 16 8 chr1 186659193 186659318 -10536114 + B1_Mus1 SINE Alu 21 146 -2 3 2009 543 256 32 8 chr1 186659380 186659506 -10535926 + RSINE1 SINE B4 2 130 -35 3 2009 586 282 36 24 chr1 186659551 186659718 -10535714 + B3A SINE B2 1 169 -29 3 2009 243 0 0 0 chr1 186659781 186659808 -10535624 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 2009 1008 24 32 0 chr1 186659814 186659938 -10535494 - B1_Mus1 SINE Alu -20 128 1 3 2009 499 195 0 99 chr1 186659829 186659960 -10535472 - MT2B LTR ERVL -337 264 147 3 2009 1127 280 40 39 chr1 186660063 186660495 -10534937 + MER21B LTR ERV1 96 567 -296 3 2009 820 224 98 17 chr1 186660657 186660894 -10534538 + ORR1D1 LTR MaLR 1 260 -110 3 2009 260 91 23 0 chr1 186660908 186660952 -10534480 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 2009 1014 205 50 0 chr1 186660977 186661177 -10534255 + ORR1D1 LTR MaLR 164 373 -1 3 2009 234 333 34 145 chr1 186661473 186661652 -10533780 + RSINE1 SINE B4 2 160 -5 3 2009 508 260 84 104 chr1 186661576 186661778 -10533654 + MER21B LTR ERV1 153 350 -513 3 2009 494 276 78 18 chr1 186661884 186662050 -10533382 + MER21B LTR ERV1 630 805 -58 3 2009 238 320 58 39 chr1 186662356 186662460 -10532972 - ID_B1 SINE B4 -33 191 86 3 2009 299 271 85 0 chr1 186662373 186662464 -10532968 - B1_Mur4 SINE Alu -51 99 1 3 2009 713 153 15 53 chr1 186662556 186662687 -10532745 + RSINE1 SINE B4 4 129 -36 3 2009 448 136 11 11 chr1 186662965 186663054 -10532378 + CT-rich Low_complexity Low_complexity 1 89 0 3 2009 269 257 8 125 chr1 186663306 186663426 -10532006 + MT2B LTR ERVL 153 258 -343 3 2009 458 184 246 0 chr1 186663325 186663439 -10531993 + B1_Mur1 SINE Alu 7 148 -1 3 2009 230 125 21 0 chr1 186663439 186663487 -10531945 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 3 2009 252 214 0 0 chr1 186663619 186663675 -10531757 + GA-rich Low_complexity Low_complexity 2 57 0 3 2009 423 0 0 0 chr1 186663762 186663809 -10531623 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 2009 549 327 0 32 chr1 186663954 186664112 -10531320 + RSINE1 SINE B4 10 162 -3 3 2009 680 221 30 61 chr1 186664577 186664741 -10530691 + ID_B1 SINE B4 12 170 -54 3 2009 1231 29 0 0 chr1 186664744 186664881 -10530551 + B1_Mm SINE Alu 2 138 -9 3 2009 838 229 326 7 chr1 186665981 186666268 -10529164 + MTEa LTR MaLR 1 379 0 3 2009 1200 36 0 0 chr1 186666610 186666747 -10528685 + B1_Mm SINE Alu 2 138 -9 3 2009 247 0 25 50 chr1 186666747 186666787 -10528645 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 2009 615 270 0 39 chr1 186667588 186667742 -10527690 + B1_Mur2 SINE Alu 2 149 0 4 2009 192 77 0 0 chr1 186668253 186668279 -10527153 + (CATTT)n Simple_repeat Simple_repeat 2 27 0 4 2009 647 228 99 64 chr1 186668287 186668489 -10526943 - ID_B1 SINE B4 -15 209 1 4 2009 204 200 0 0 chr1 186670495 186670545 -10524887 + G-rich Low_complexity Low_complexity 1 50 0 4 2009 216 129 0 0 chr1 186670640 186670671 -10524761 + B2_Mm1t SINE B2 6 36 -157 4 2009 411 228 11 11 chr1 186670788 186670881 -10524551 + B3 SINE B2 124 216 0 4 2009 255 259 124 118 chr1 186671065 186671218 -10524214 + MER67B LTR ERV1 498 651 -10 4 2009 210 191 0 0 chr1 186671433 186671475 -10523957 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 2009 1165 163 35 0 chr1 186671598 186671801 -10523631 - URR1A DNA MER1_type 0 226 17 4 2009 3131 75 22 0 chr1 186671985 186672397 -10523035 + BGLII LTR ERVK 1 421 0 4 2009 544 202 0 21 chr1 186672474 186672570 -10522862 - B1_Mur4 SINE Alu -28 122 29 4 2009 833 215 33 28 chr1 186672538 186672720 -10522712 - B3 SINE B2 -32 184 2 4 2009 585 214 0 0 chr1 186672917 186673193 -10522239 + (TG)n Simple_repeat Simple_repeat 1 276 0 4 2009 269 300 86 62 chr1 186673198 186673326 -10522106 - RSINE1 SINE B4 -2 290 79 4 2009 195 338 104 0 chr1 186673457 186673534 -10521898 - L2 LINE L2 -926 2493 2409 4 2009 885 149 256 0 chr1 186674084 186674252 -10521180 - B3 SINE B2 -1 215 5 4 2009 441 55 0 0 chr1 186674312 186674367 -10521065 - B2_Mm2 SINE B2 -94 101 47 4 2009 1329 75 11 0 chr1 186674410 186674584 -10520848 - B2_Mm1t SINE B2 -16 177 2 4 2009 1264 27 0 7 chr1 186674720 186674867 -10520565 + B1_Mm SINE Alu 2 147 0 4 2009 264 40 60 0 chr1 186674880 186674930 -10520502 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 4 2009 254 180 0 57 chr1 186675361 186675414 -10520018 - MTD LTR MaLR -358 61 12 4 2009 315 0 0 0 chr1 186675780 186675815 -10519617 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 2009 403 261 0 11 chr1 186676803 186676896 -10518536 - PB1D10 SINE Alu -5 112 21 4 2009 642 288 63 29 chr1 186676929 186677104 -10518328 - B3A SINE B2 -16 182 2 4 2009 333 0 0 0 chr1 186678381 186678418 -10517014 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 4 2009 232 89 15 138 chr1 186678563 186678599 -10516833 - B3 SINE B2 -1 215 188 4 2009 917 122 0 0 chr1 186678599 186678730 -10516702 + RLTR12B LTR ERVK 1 131 -397 4 2009 939 95 122 0 chr1 186678732 186678879 -10516553 + B2_Mm1t SINE B2 15 179 -14 4 2009 1993 155 40 3 chr1 186678961 186679310 -10516122 + RLTR12B LTR ERVK 167 528 0 4 2009 506 235 112 9 chr1 186679310 186679426 -10516006 - B3 SINE B2 -32 184 57 4 2009 5324 179 61 12 chr1 186679426 186680161 -10515271 + RMER12 LTR ERVK 1 758 -564 4 2009 330 26 0 0 chr1 186680161 186680200 -10515232 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 4 2009 5324 228 79 39 chr1 186680200 186680749 -10514683 + RMER12 LTR ERVK 759 1848 0 4 2009 476 262 67 85 chr1 186680749 186680913 -10514519 + ORR1D2 LTR MaLR 181 370 0 4 2009 288 330 28 0 chr1 186680914 186681020 -10514412 + MLT1D LTR MaLR 38 146 -359 4 2009 230 106 21 0 chr1 186681075 186681122 -10514310 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 2009 248 316 73 13 chr1 186681124 186681275 -10514157 + MLT1D LTR MaLR 157 316 -189 4 2009 240 328 29 6 chr1 186681286 186681458 -10513974 + L1M4 LINE L1 2826 3001 -3145 4 2009 479 286 102 0 chr1 186681490 186681637 -10513795 + RSINE1 SINE B4 3 164 -1 4 2009 581 172 11 0 chr1 186681646 186681820 -10513612 + (CAGA)n Simple_repeat Simple_repeat 3 178 0 4 2009 573 231 9 0 chr1 186681869 186681977 -10513455 + PB1D9 SINE Alu 1 109 -11 4 2009 623 92 0 0 chr1 186681996 186682083 -10513349 - MTC LTR MaLR -139 282 196 4 2009 858 182 119 102 chr1 186682082 186682308 -10513124 - 7SK RNA RNA -101 230 1 4 2009 709 167 0 0 chr1 186682307 186682415 -10513017 - MTC LTR MaLR -210 211 104 4 2009 738 93 9 36 chr1 186682427 186682538 -10512894 - B1_Mur4 SINE Alu 0 150 43 4 2009 234 0 0 158 chr1 186682541 186682655 -10512777 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 4 2009 269 203 16 33 chr1 186682656 186682717 -10512715 - B1_Mur4 SINE Alu -90 60 1 4 2009 298 241 145 0 chr1 186682717 186682800 -10512632 - MTC LTR MaLR -323 98 4 4 2009 432 0 0 0 chr1 186682837 186682885 -10512547 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 2009 339 302 0 179 chr1 186683228 186683373 -10512059 + MTE2a LTR MaLR 1 119 -260 4 2009 668 242 15 23 chr1 186683523 186683684 -10511748 - ID_B1 SINE B4 -44 248 86 4 2009 291 342 59 47 chr1 186685283 186685452 -10509980 - MER21B LTR ERV1 -114 749 579 4 2009 216 0 0 0 chr1 186685454 186685478 -10509954 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 2009 1104 106 0 0 chr1 186686458 186686637 -10508795 + (CTG)n Simple_repeat Simple_repeat 1 179 0 4 2009 818 281 44 24 chr1 186686744 186686996 -10508436 - RMER5 LTR ERV1 -208 326 70 4 2009 184 238 119 0 chr1 186687232 186687274 -10508158 - L4 LINE RTE -1736 293 247 4 2009 257 100 0 79 chr1 186687441 186687517 -10507915 + GA-rich Low_complexity Low_complexity 6 75 0 4 2009 263 280 34 97 chr1 186687518 186687755 -10507677 - RMER10B LTR ERVL -133 265 44 4 2009 533 200 173 9 chr1 186687885 186688013 -10507419 + ID_B1 SINE B4 81 224 0 4 2009 204 258 160 30 chr1 186688610 186688710 -10506722 - MIR3 SINE MIR -19 189 77 4 2009 254 294 98 0 chr1 186688959 186689061 -10506371 + LTR16A LTR ERVL 240 351 -100 4 2009 421 200 0 0 chr1 186689088 186689163 -10506269 + MTC LTR MaLR 8 82 -339 4 2009 838 194 0 0 chr1 186689167 186689301 -10506131 + B1_Mus1 SINE Alu 5 138 -10 4 2009 928 149 0 0 chr1 186689315 186689456 -10505976 + MTC LTR MaLR 70 210 -211 4 2009 1198 72 76 23 chr1 186689456 186689628 -10505804 + B2_Mm2 SINE B2 1 181 -14 4 2009 462 45 0 0 chr1 186689679 186689746 -10505686 + B2_Mm1a SINE B2 127 193 0 4 2009 809 170 178 99 chr1 186689754 186689956 -10505476 + MTC LTR MaLR 196 413 -6 4 2009 722 290 0 18 chr1 186690087 186690252 -10505180 + RSINE1 SINE B4 4 165 0 4 2009 227 181 274 14 chr1 186690193 186690266 -10505166 + B3 SINE B2 125 216 0 4 2009 204 214 0 0 chr1 186690943 186690999 -10504433 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 2009 3267 48 5 43 chr1 186691025 186691441 -10503991 - MTB LTR MaLR 0 400 1 4 2009 483 262 31 16 chr1 186691474 186691602 -10503830 - B4A SINE B4 -162 130 1 4 2009 222 319 0 14 chr1 186691620 186691690 -10503742 - ID4_ SINE ID 0 83 15 4 2009 207 331 54 70 chr1 186691700 186691885 -10503547 - MIRb SINE MIR -41 227 46 4 2009 557 252 7 33 chr1 186692226 186692378 -10503054 + B1F SINE Alu 1 148 -1 4 2009 228 241 0 69 chr1 186693073 186693131 -10502301 + PB1D7 SINE Alu 66 119 -1 4 2009 668 145 16 39 chr1 186693523 186693652 -10501780 - B1_Mur3 SINE Alu -1 148 23 4 2009 234 230 8 167 chr1 186693561 186693681 -10501751 - MT2B LTR ERVL -337 264 164 4 2009 1318 128 17 60 chr1 186694722 186694955 -10500477 + URR1B DNA MER1_type 3 225 0 4 2009 231 290 0 31 chr1 186695131 186695195 -10500237 - B4A SINE B4 -145 147 86 4 2009 266 47 47 0 chr1 186697232 186697275 -10498157 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 2009 636 14 0 0 chr1 186697443 186697516 -10497916 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 4 2009 990 44 2 1 chr1 186699986 186700115 -10495317 + B1_Mus1 SINE Alu 20 148 0 4 2009 360 59 0 0 chr1 186700122 186700173 -10495259 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 4 2009 275 188 56 28 chr1 186700365 186700436 -10494996 + MIR SINE MIR 100 172 -90 4 2009 669 58 0 0 chr1 186700452 186700538 -10494894 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 4 2009 201 74 0 0 chr1 186700725 186700752 -10494680 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 2009 551 250 14 35 chr1 186700753 186700898 -10494534 - B1F1 SINE Alu -7 142 1 4 2009 458 297 34 124 chr1 186701404 186701758 -10493674 + MLT1D LTR MaLR 18 339 -166 4 2009 391 234 26 43 chr1 186702016 186702132 -10493300 - B4A SINE B4 -7 285 172 4 2009 282 316 147 0 chr1 186702146 186702241 -10493191 - B4A SINE B4 -156 136 28 4 2009 562 135 93 10 chr1 186702316 186702413 -10493019 - PB1D9 SINE Alu -13 107 3 4 2009 307 222 99 0 chr1 186702554 186702635 -10492797 - ID_B1 SINE B4 -131 93 5 4 2009 348 88 0 0 chr1 186702642 186702699 -10492733 + (GGTTG)n Simple_repeat Simple_repeat 5 61 0 4 2009 248 155 76 121 chr1 186702699 186702765 -10492667 - PB1D10 SINE Alu -4 113 51 4 2009 231 61 0 0 chr1 186703819 186703852 -10491580 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 2009 189 74 0 0 chr1 186703853 186703880 -10491552 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 2009 320 254 158 83 chr1 186703880 186703907 -10491525 - L1MB5 LINE L1 -20 6154 6129 4 2009 991 187 44 25 chr1 186703907 186704110 -10491322 + B3 SINE B2 4 210 -6 4 2009 320 281 149 61 chr1 186704110 186704514 -10490918 - L1MB5 LINE L1 -46 6128 5679 4 2009 1041 97 35 0 chr1 186704696 186704841 -10490591 - B1_Mur4 SINE Alu 0 150 1 4 2009 453 276 134 27 chr1 186704886 186705035 -10490397 - RSINE1 SINE B4 0 165 1 4 2009 522 247 54 20 chr1 186705035 186705170 -10490262 - ID_B1 SINE B4 -82 142 3 4 2009 604 135 180 16 chr1 186705184 186705312 -10490120 - B1_Mur4 SINE Alu -1 149 1 4 2009 391 247 0 12 chr1 186705386 186705472 -10489960 - PB1D10 SINE Alu -15 102 18 4 2009 201 372 29 10 chr1 186705638 186705741 -10489691 + L2a LINE L2 3315 3419 -7 4 2009 624 191 86 29 chr1 186707148 186707288 -10488144 + B1_Mur3 SINE Alu 1 148 -1 4 2009 739 233 92 10 chr1 186707368 186707563 -10487869 + ID_B1 SINE B4 5 215 -9 4 2009 536 222 104 5 chr1 186707927 186708095 -10487337 - B3A SINE B2 -8 185 3 4 2009 261 98 0 0 chr1 186708441 186708482 -10486950 + (CAT)n Simple_repeat Simple_repeat 3 43 0 5 2009 987 93 0 0 chr1 186708655 186708795 -10486637 + (GGAGA)n Simple_repeat Simple_repeat 3 142 0 5 2009 613 199 14 115 chr1 186708819 186708967 -10486465 - B1_Mur2 SINE Alu 0 149 17 5 2009 457 184 90 18 chr1 186709024 186709038 -10486394 + B1_Mur2 SINE Alu 3 16 -133 5 2009 342 0 0 0 chr1 186709038 186709076 -10486356 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 2009 457 184 90 18 chr1 186709076 186709172 -10486260 + B1_Mur2 SINE Alu 17 121 -28 5 2009 671 224 6 0 chr1 186709481 186709655 -10485777 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 2009 495 219 0 20 chr1 186709717 186709815 -10485617 + B3 SINE B2 1 96 -120 5 2009 1387 59 0 51 chr1 186710373 186710569 -10484863 + B2_Mm2 SINE B2 2 187 -8 5 2009 951 95 0 81 chr1 186710579 186710700 -10484732 + B1_Mm SINE Alu 1 121 -26 5 2009 362 39 0 38 chr1 186710700 186710753 -10484679 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 2009 951 95 0 81 chr1 186710753 186710791 -10484641 + B1_Mm SINE Alu 122 147 0 5 2009 563 342 63 15 chr1 186711131 186711401 -10484031 - MLT1B LTR MaLR -107 283 1 5 2009 393 22 0 0 chr1 186712084 186712130 -10483302 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 2009 216 0 0 0 chr1 186712188 186712212 -10483220 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 2009 586 234 89 0 chr1 186712215 186712339 -10483093 - RSINE1 SINE B4 -29 136 2 5 2009 691 191 0 135 chr1 186712358 186712528 -10482904 - B1_Mur1 SINE Alu 0 149 3 5 2009 780 146 0 0 chr1 186712584 186712748 -10482684 + (TG)n Simple_repeat Simple_repeat 1 164 0 5 2009 383 202 8 0 chr1 186712759 186712878 -10482554 + (TG)n Simple_repeat Simple_repeat 2 121 0 5 2009 3891 184 20 16 chr1 186713205 186713855 -10481577 + RMER1A Other Other 271 867 -163 5 2009 2507 98 3 0 chr1 186713855 186714181 -10481251 + ORR1A2 LTR MaLR 1 327 0 5 2009 3891 172 20 9 chr1 186714181 186714299 -10481133 + RMER1A Other Other 868 990 -40 5 2009 2623 99 116 36 chr1 186714299 186714739 -10480693 + IAPLTR2_Mm LTR ERVK 1 475 0 5 2009 3891 172 20 9 chr1 186714739 186714775 -10480657 + RMER1A Other Other 991 1024 -6 5 2009 25 0 0 0 chr1 186714780 186714805 -10480627 + AT_rich Low_complexity Low_complexity 1 25 0 5 2009 922 224 62 15 chr1 186714807 186715002 -10480430 - B3 SINE B2 -12 204 1 5 2009 564 216 10 0 chr1 186715069 186715171 -10480261 - PB1D9 SINE Alu -16 104 2 5 2009 329 185 104 30 chr1 186715445 186715512 -10479920 - RSINE1 SINE B4 -85 80 9 5 2009 489 251 2 7 chr1 186715566 186715685 -10479747 + B3 SINE B2 90 203 -13 5 2009 409 341 124 76 chr1 186715707 186716126 -10479306 + LTR55 LTR ERV 102 540 -8 5 2009 396 0 0 0 chr1 186716215 186716259 -10479173 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 2009 490 245 135 14 chr1 186716264 186716405 -10479027 - RSINE1 SINE B4 -7 158 1 5 2009 456 276 43 32 chr1 186716570 186716757 -10478675 - L1M2 LINE L1 -634 5666 5478 5 2009 272 302 33 44 chr1 186716757 186716847 -10478585 - B4A SINE B4 -128 164 76 5 2009 514 244 168 5 chr1 186716869 186717054 -10478378 - L1M2 LINE L1 -743 5400 5186 5 2009 227 304 112 9 chr1 186717125 186717241 -10478191 - L1MEc LINE L1 -4206 2194 2067 5 2009 891 276 166 17 chr1 186717325 186717686 -10477746 + MTD LTR MaLR 1 415 -4 5 2009 390 317 90 63 chr1 186717716 186717815 -10477617 - L1MEc LINE L1 -4524 1876 1774 5 2009 1117 62 181 0 chr1 186717815 186717975 -10477457 - B2_Mm2 SINE B2 -6 189 1 5 2009 390 317 90 63 chr1 186717975 186718242 -10477190 - L1MEc LINE L1 -4627 1773 1501 5 2009 520 208 143 8 chr1 186718578 186718704 -10476728 - B1_Mur4 SINE Alu 0 150 8 5 2009 897 253 99 70 chr1 186718934 186719206 -10476226 - B4 SINE B4 -2 290 11 5 2009 829 244 47 28 chr1 186719231 186719442 -10475990 - B3 SINE B2 -1 215 1 5 2009 543 167 0 0 chr1 186723091 186723205 -10472227 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 2009 298 290 99 21 chr1 186725243 186725384 -10470048 + B4A SINE B4 139 290 -2 5 2009 682 202 213 6 chr1 186725440 186725609 -10469823 + B3 SINE B2 2 205 -11 5 2009 1526 33 28 0 chr1 186725847 186726029 -10469403 + B2_Mm2 SINE B2 1 187 -8 5 2009 267 93 0 0 chr1 186726394 186726437 -10468995 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 2009 261 0 0 0 chr1 186726461 186726490 -10468942 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 5 2009 21 36 0 0 chr1 186726547 186726575 -10468857 + AT_rich Low_complexity Low_complexity 1 28 0 5 2009 253 192 39 0 chr1 186727407 186727459 -10467973 - PB1D9 SINE Alu -66 54 1 5 2009 743 215 197 6 chr1 186727997 186728175 -10467257 - B3 SINE B2 -4 212 1 5 2009 241 186 42 28 chr1 186728303 186728375 -10467057 + (CATA)n Simple_repeat Simple_repeat 4 76 0 5 2009 315 0 0 0 chr1 186728375 186728410 -10467022 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 2009 380 272 47 23 chr1 186728411 186728539 -10466893 + RSINE1 SINE B4 17 147 -18 5 2009 455 245 64 7 chr1 186728733 186728873 -10466559 - B1_Mur2 SINE Alu 0 149 2 5 2009 256 240 146 0 chr1 186728922 186729018 -10466414 - ID_B1 SINE B4 -3 221 112 5 2009 666 197 51 36 chr1 186730466 186730603 -10464829 - B1_Mm SINE Alu -8 139 1 5 2009 472 304 0 20 chr1 186730654 186730802 -10464630 - RSINE1 SINE B4 -17 148 4 5 2009 393 247 0 0 chr1 186732995 186733076 -10462356 - ID4_ SINE ID -1 82 2 5 2009 430 277 27 0 chr1 186733322 186733434 -10461998 + B3A SINE B2 46 160 -38 5 2009 180 77 0 0 chr1 186733443 186733469 -10461963 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 2009 597 219 191 0 chr1 186734355 186734533 -10460899 - B3 SINE B2 0 216 5 5 2009 511 197 226 8 chr1 186734698 186734831 -10460601 - RSINE1 SINE B4 -1 164 3 5 2009 282 254 30 33 chr1 186735566 186735686 -10459746 + B1F SINE Alu 1 118 -2 5 2009 396 0 0 0 chr1 186736737 186736781 -10458651 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 2009 214 244 0 0 chr1 186736781 186736822 -10458610 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 2009 319 243 21 11 chr1 186737118 186737214 -10458218 - MIRb SINE MIR -66 196 102 5 2009 873 228 40 0 chr1 186738687 186738889 -10456543 - B3 SINE B2 -6 210 1 5 2009 24 0 0 0 chr1 186739442 186739466 -10455966 + AT_rich Low_complexity Low_complexity 1 24 0 5 2009 2755 72 47 20 chr1 186739470 186739878 -10455554 + BGLII_Mus LTR ERVK 4 422 0 5 2009 321 89 0 0 chr1 186740362 186740407 -10455025 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 2009 270 136 0 0 chr1 186740407 186740451 -10454981 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 2009 21 0 0 0 chr1 186740454 186740475 -10454957 + AT_rich Low_complexity Low_complexity 1 21 0 5 2009 423 38 0 0 chr1 186740904 186740957 -10454475 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 2009 802 198 90 11 chr1 186740987 186741176 -10454256 + B3 SINE B2 8 211 -5 5 2009 721 133 282 4 chr1 186741332 186741600 -10453832 + ORR1B2 LTR MaLR 1 343 -24 5 2009 705 208 168 0 chr1 186742453 186742626 -10452806 + B3 SINE B2 1 202 -14 5 2009 242 257 26 9 chr1 186744752 186744866 -10450566 + A-rich Low_complexity Low_complexity 3 118 0 5 2009 1103 128 77 0 chr1 186744928 186745124 -10450308 - URR1A DNA MER1_type -15 211 1 5 2009 28 48 0 0 chr1 186745376 186745418 -10450014 + AT_rich Low_complexity Low_complexity 1 42 0 5 2009 22 56 0 0 chr1 186745514 186745550 -10449882 + AT_rich Low_complexity Low_complexity 1 36 0 5 2009 1339 61 44 11 chr1 186745780 186745962 -10449470 - B2_Mm2 SINE B2 -7 188 1 5 2009 771 239 23 54 chr1 186747868 186748089 -10447343 - B3 SINE B2 0 216 3 5 2009 540 0 0 0 chr1 186748101 186748161 -10447271 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 2009 263 221 129 0 chr1 186748557 186748694 -10446738 + Lx7 LINE L1 5703 5866 -1830 5 2009 378 0 0 0 chr1 186749210 186749252 -10446180 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 2009 272 250 112 0 chr1 186751388 186751468 -10443964 + MIRb SINE MIR 177 265 -3 5 2009 367 219 215 16 chr1 186752214 186752335 -10443097 + B4 SINE B4 79 223 -69 5 2009 625 117 48 0 chr1 186752234 186752337 -10443095 + PB1D9 SINE Alu 13 120 0 5 2009 277 277 76 38 chr1 186753720 186753825 -10441607 + PB1D10 SINE Alu 1 109 -8 5 2009 258 192 0 0 chr1 186753834 186753886 -10441546 + GA-rich Low_complexity Low_complexity 2 53 0 5 2009 357 98 0 0 chr1 186753909 186753960 -10441472 + B1_Mus2 SINE Alu 61 111 -36 5 2009 942 184 43 24 chr1 186754006 186754217 -10441215 - B3 SINE B2 0 216 2 5 2009 1174 68 0 0 chr1 186754373 186754519 -10440913 + B1_Mus2 SINE Alu 2 147 0 5 2009 341 331 99 0 chr1 186754535 186754656 -10440776 + RSINE1 SINE B4 28 160 -5 5 2009 439 282 64 40 chr1 186754872 186755190 -10440242 + L1M3 LINE L1 5359 5682 -501 5 2009 315 0 0 0 chr1 186755459 186755494 -10439938 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 2009 202 61 61 0 chr1 186755494 186755527 -10439905 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 2009 1100 153 119 0 chr1 186756292 186756494 -10438938 + URR1A DNA MER1_type 1 226 0 5 2009 339 300 144 28 chr1 186756737 186757097 -10438335 + Tigger13a DNA MER2_type 325 726 -45 5 2009 360 0 0 0 chr1 186757408 186757448 -10437984 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 5 2009 393 280 36 42 chr1 186757469 186757637 -10437795 - B3A SINE B2 -30 168 2 5 2009 24 32 0 0 chr1 186757972 186758003 -10437429 + AT_rich Low_complexity Low_complexity 1 31 0 5 2009 1961 140 47 8 chr1 186758134 186758495 -10436937 - ORR1C2 LTR MaLR -7 377 3 5 2009 1100 247 48 13 chr1 186758671 186758983 -10436449 + MLT1B LTR MaLR 66 388 -2 5 2009 289 325 61 0 chr1 186759587 186759701 -10435731 - Tigger15a DNA TcMar -574 141 21 5 2009 355 192 51 0 chr1 186760541 186760619 -10434813 - B1F SINE Alu 0 149 68 5 2009 289 317 87 62 chr1 186761989 186762184 -10433248 - Charlie25 DNA MER1_type -224 2300 2101 6 2009 610 190 0 16 chr1 186762284 186762407 -10433025 - B1_Mur2 SINE Alu -7 142 22 6 2009 360 0 0 0 chr1 186762937 186762977 -10432455 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 2009 1105 116 0 0 chr1 186763048 186763212 -10432220 + B2_Mm2 SINE B2 1 164 -31 6 2009 189 0 0 0 chr1 186763870 186763891 -10431541 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 6 2009 210 307 111 22 chr1 186763910 186764000 -10431432 - PB1D10 SINE Alu -19 98 1 6 2009 1021 209 30 5 chr1 186764100 186764302 -10431130 + B3 SINE B2 1 207 -9 6 2009 1153 64 6 39 chr1 186766104 186766283 -10429149 - B2_Mm2 SINE B2 -8 187 15 6 2009 220 316 65 71 chr1 186766572 186766756 -10428676 + B3A SINE B2 1 183 -15 6 2009 888 103 7 7 chr1 186767480 186767617 -10427815 - B1_Mus2 SINE Alu -6 141 5 6 2009 425 293 45 0 chr1 186768027 186768041 -10427391 + B1F2 SINE Alu 1 139 -10 6 2009 542 261 0 0 chr1 186768041 186768160 -10427272 + ID_B1 SINE B4 96 214 -10 6 2009 357 75 0 0 chr1 186768168 186768221 -10427211 + (CCAA)n Simple_repeat Simple_repeat 3 55 0 6 2009 943 121 0 41 chr1 186768947 186769093 -10426339 + B1_Mur4 SINE Alu 1 140 -10 6 2009 303 28 0 0 chr1 186769093 186769129 -10426303 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 2009 180 0 0 0 chr1 186769465 186769485 -10425947 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 2009 306 0 0 0 chr1 186769505 186769539 -10425893 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6 2009 226 376 80 0 chr1 186769539 186769664 -10425768 - B1F SINE Alu -14 135 1 6 2009 1069 250 106 59 chr1 186769680 186770020 -10425412 + MTEa LTR MaLR 22 377 -2 6 2009 180 0 0 0 chr1 186770075 186770095 -10425337 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 2009 244 299 38 38 chr1 186771376 186771456 -10423976 - ID4 SINE ID -2 81 2 6 2009 4774 186 92 3 chr1 186771835 186772738 -10422694 + RMER1A Other Other 43 1025 -5 6 2009 269 299 0 0 chr1 186772945 186773012 -10422420 - ERVL-E-int LTR ERVL -5118 549 483 6 2009 254 264 46 0 chr1 186773631 186773718 -10421714 - MLT1N2 LTR MaLR -14 548 458 6 2009 818 196 148 22 chr1 186774446 186774629 -10420803 + B3 SINE B2 5 210 -6 6 2009 378 0 0 0 chr1 186776384 186776426 -10419006 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 2009 619 215 20 53 chr1 186776452 186776604 -10418828 + B1_Mur2 SINE Alu 3 149 0 6 2009 342 276 19 9 chr1 186776622 186776642 -10418790 - ID_B1 SINE B4 -34 190 84 6 2009 406 221 23 0 chr1 186776642 186776728 -10418704 - PB1D10 SINE Alu -27 90 3 6 2009 201 139 0 65 chr1 186776741 186776787 -10418645 + C-rich Low_complexity Low_complexity 2 44 0 6 2010 5343 28 0 0 chr1 186777741 186778347 -10417085 - L1Md_T LINE L1 0 6582 5977 6 2010 332 276 120 10 chr1 186778379 186778600 -10416832 + L1M4 LINE L1 2210 2465 -3681 6 2010 189 0 0 0 chr1 186779712 186779733 -10415699 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 6 2010 24 0 0 0 chr1 186781184 186781208 -10414224 + AT_rich Low_complexity Low_complexity 1 24 0 6 2010 591 223 0 0 chr1 186781812 186781915 -10413517 + RSINE1 SINE B4 37 139 -26 6 2010 315 0 0 0 chr1 186781922 186781957 -10413475 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 2010 223 246 0 17 chr1 186782063 186782121 -10413311 - B2_Mm2 SINE B2 -138 57 1 6 2010 204 200 0 0 chr1 186782394 186782439 -10412993 + G-rich Low_complexity Low_complexity 6 50 0 6 2010 4733 215 41 8 chr1 186783431 186784389 -10411043 + Lx5 LINE L1 6057 7045 -5 6 2010 250 247 47 0 chr1 186784556 186784641 -10410791 + RMER1B Other Other 72 160 -906 6 2010 3122 144 151 78 chr1 186784659 186785372 -10410060 + RMER1B Other Other 1 1063 -3 6 2010 332 325 329 33 chr1 186786949 186787461 -10407971 + L2 LINE L2 2152 2814 -605 6 2010 278 259 97 9 chr1 186787503 186787616 -10407816 + Lx8 LINE L1 6812 6934 -539 6 2010 933 201 168 4 chr1 186787629 186787879 -10407553 + Lx8 LINE L1 7047 7337 -136 6 2010 887 158 176 21 chr1 186788017 186788204 -10407228 + B3 SINE B2 1 216 0 6 2010 519 168 7 11 chr1 186788211 186788301 -10407131 + B1_Mur3 SINE Alu 57 148 -1 6 2010 198 0 0 0 chr1 186788323 186788345 -10407087 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 2010 806 318 47 50 chr1 186788579 186788917 -10406515 - MER2 DNA MER2_type -8 337 1 6 2010 238 348 80 38 chr1 186789549 186789761 -10405671 - MIRb SINE MIR -45 223 3 6 2010 889 128 0 0 chr1 186790132 186790265 -10405167 + B1_Mus2 SINE Alu 15 147 0 6 2010 548 84 0 12 chr1 186790367 186790451 -10404981 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 6 2010 737 207 7 0 chr1 186790854 186790989 -10404443 + RSINE1 SINE B4 1 136 -29 6 2010 232 200 0 22 chr1 186791892 186791938 -10403494 + CT-rich Low_complexity Low_complexity 1 45 0 6 2010 361 211 263 0 chr1 186791939 186792034 -10403398 - B1_Mur2 SINE Alu -21 128 9 6 2010 2268 101 6 0 chr1 186792109 186792426 -10403006 - ORR1A2 LTR MaLR -8 319 1 6 2010 25 0 0 0 chr1 186792819 186792844 -10402588 + AT_rich Low_complexity Low_complexity 1 25 0 6 2010 781 194 43 15 chr1 186792892 186793073 -10402359 + B3 SINE B2 1 192 -1 6 2010 257 308 10 71 chr1 186793185 186793283 -10402149 + B1F1 SINE Alu 27 118 -31 6 2010 315 0 0 0 chr1 186793304 186793339 -10402093 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 2010 2848 46 3 14 chr1 186793861 186794211 -10401221 - ORR1A1 LTR MaLR 0 346 1 6 2010 534 231 69 8 chr1 186794236 186794367 -10401065 - B1F2 SINE Alu 0 149 11 6 2010 205 351 0 0 chr1 186794771 186794848 -10400584 + (CATA)n Simple_repeat Simple_repeat 4 80 0 6 2010 1993 134 13 100 chr1 186795089 186795478 -10399954 - ORR1B1 LTR MaLR 0 394 40 6 2010 270 355 51 40 chr1 186796448 186796624 -10398808 - L2 LINE L2 -1409 2010 1833 6 2010 779 245 132 72 chr1 186796683 186796934 -10398498 + ORR1E LTR MaLR 24 289 -70 6 2010 1111 200 0 19 chr1 186797076 186797285 -10398147 - B3 SINE B2 -11 205 1 6 2010 228 35 0 0 chr1 186797382 186797411 -10398021 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 6 2010 915 156 7 33 chr1 186797446 186797598 -10397834 - B1_Mur3 SINE Alu 0 149 2 6 2010 395 260 29 20 chr1 186797705 186797807 -10397625 + ERVL-E-int LTR ERVL 1746 1848 -3819 6 2010 579 330 75 9 chr1 186797830 186798148 -10397284 + ERVL-E-int LTR ERVL 1952 2290 -3424 6 2010 259 332 0 0 chr1 186798173 186798245 -10397187 + ID2 SINE ID 1 72 -11 6 2010 212 277 83 12 chr1 186798181 186798265 -10397167 + ID_B1 SINE B4 9 98 -126 6 2010 447 326 72 0 chr1 186798268 186798504 -10396928 + ERVL-E-int LTR ERVL 2328 2580 -2905 6 2010 448 268 161 35 chr1 186798623 186798766 -10396666 - MER20 DNA MER1_type -58 161 1 6 2010 402 222 14 162 chr1 186799219 186799429 -10396003 - Ricksha DNA MuDR -1 3245 3067 6 2010 714 291 70 4 chr1 186799431 186799704 -10395728 + B4A SINE B4 2 292 0 6 2010 534 225 0 0 chr1 186799706 186799884 -10395548 + (CACG)n Simple_repeat Simple_repeat 1 178 0 6 2010 389 298 24 0 chr1 186799922 186800046 -10395386 - Ricksha DNA MuDR -184 3062 2936 6 2010 965 213 55 8 chr1 186800165 186800321 -10395111 - Ricksha DNA MuDR -480 2766 2603 6 2010 1126 120 26 37 chr1 186800321 186800512 -10394920 + B2_Mm2 SINE B2 2 190 -5 6 2010 965 213 55 8 chr1 186800512 186800611 -10394821 - Ricksha DNA MuDR -644 2602 2499 6 2010 529 233 104 30 chr1 186800854 186801018 -10394414 - Ricksha DNA MuDR -1147 2099 1924 6 2010 263 293 0 13 chr1 186801194 186801270 -10394162 + Ricksha DNA MuDR 3164 3238 -8 6 2010 610 318 110 87 chr1 186801274 186801881 -10393551 + ERVL-E-int LTR ERVL 3293 3913 -1801 6 2010 260 289 40 0 chr1 186801992 186802068 -10393364 + ERVL-E-int LTR ERVL 4217 4295 -1466 6 2010 899 342 18 29 chr1 186802319 186802662 -10392770 + ERVL-E-int LTR ERVL 4401 4739 -928 6 2010 255 253 93 62 chr1 186802749 186802846 -10392586 - MLT1G3 LTR MaLR -198 397 298 6 2010 629 323 69 0 chr1 186802846 186803149 -10392283 + ERVL-E-int LTR ERVL 5059 5382 -332 6 2010 390 287 27 27 chr1 186803207 186803354 -10392078 + ERVL-E-int LTR ERVL 5491 5637 -30 6 2010 525 311 81 66 chr1 186803403 186803675 -10391757 + LTR33C LTR ERVL 1 276 -387 6 2010 2504 80 9 0 chr1 186804365 186804689 -10390743 - ORR1A2 LTR MaLR 0 327 1 6 2010 11295 123 60 21 chr1 186804689 186806578 -10388854 - ORR1A2-int LTR MaLR 0 1963 1 6 2010 2504 81 12 0 chr1 186806578 186806901 -10388531 - ORR1A2 LTR MaLR 0 327 1 6 2010 283 344 31 41 chr1 186808308 186808405 -10387027 + RSINE1 SINE B4 55 150 -15 6 2010 1016 161 82 68 chr1 186809471 186809691 -10385741 + URR1B DNA MER1_type 1 223 -2 6 2010 917 186 138 60 chr1 186809896 186810165 -10385267 + Lx9 LINE L1 7354 7643 -1 6 2010 337 325 178 36 chr1 186812023 186812304 -10383128 - Charlie7 DNA MER1_type -310 2302 1982 6 2010 470 333 105 16 chr1 186812424 186812738 -10382694 + Lx8 LINE L1 7130 7471 -2 6 2010 188 86 29 0 chr1 186813258 186813293 -10382139 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 6 2010 428 276 132 57 chr1 186813295 186813575 -10381857 + L1MEd LINE L1 693 993 -5126 6 2010 1384 256 78 7 chr1 186813781 186814214 -10381218 + L1MB1 LINE L1 2203 2666 -3474 6 2010 289 239 59 75 chr1 186814229 186814290 -10381142 + PB1D7 SINE Alu 5 111 -9 6 2010 239 160 0 123 chr1 186814290 186814338 -10381094 + ID_B1 SINE B4 172 215 -9 6 2010 1014 121 0 0 chr1 186814338 186814495 -10380937 + (GGAAA)n Simple_repeat Simple_repeat 3 159 0 6 2010 1328 79 10 26 chr1 186814646 186814840 -10380592 + B2_Mm2 SINE B2 2 192 -3 6 2010 361 235 43 5 chr1 186814864 186814998 -10380434 + L1MB1 LINE L1 2761 2895 -3251 6 2010 1957 259 121 66 chr1 186814994 186816625 -10378807 + L1MB1 LINE L1 3412 5382 -786 6 2010 525 71 0 0 chr1 186816625 186816695 -10378737 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 2010 1631 262 50 116 chr1 186816695 186816815 -10378617 + L1MB1 LINE L1 5383 5429 -739 6 2010 288 77 0 0 chr1 186816815 186816854 -10378578 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 6 2010 1631 262 50 116 chr1 186816854 186817574 -10377858 + L1MB1 LINE L1 5430 6163 -5 6 2010 390 328 71 54 chr1 186817581 186817861 -10377571 + L1MEd LINE L1 975 1259 -4966 6 2010 316 206 53 40 chr1 186818067 186818143 -10377289 + L1MEd LINE L1 1290 1366 -4859 6 2010 784 162 161 5 chr1 186818145 186818219 -10377213 + Lx9 LINE L1 7253 7342 -302 6 2010 396 0 0 0 chr1 186818219 186818263 -10377169 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 2010 784 162 161 5 chr1 186818263 186818380 -10377052 + Lx9 LINE L1 7343 7473 -171 6 2010 255 140 0 0 chr1 186818392 186818442 -10376990 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 2010 201 74 0 0 chr1 186818443 186818470 -10376962 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 6 2010 212 69 49 49 chr1 186818601 186818662 -10376770 + (TTATA)n Simple_repeat Simple_repeat 3 63 0 6 2010 24 53 0 0 chr1 186818662 186818700 -10376732 + AT_rich Low_complexity Low_complexity 1 38 0 6 2010 466 214 0 43 chr1 186818700 186818793 -10376639 + B1_Mus2 SINE Alu 59 147 0 6 2010 326 281 40 30 chr1 186818811 186818825 -10376607 + L1MEd LINE L1 1604 1615 -4534 6 2010 545 259 0 0 chr1 186818825 186818941 -10376491 - PB1D10 SINE Alu 0 117 2 6 2010 326 281 40 30 chr1 186818941 186819025 -10376407 + L1MEd LINE L1 1616 1703 -4446 6 2010 521 252 45 26 chr1 186819102 186819257 -10376175 + RSINE1 SINE B4 4 161 -4 6 2010 180 152 0 0 chr1 186820217 186820250 -10375182 + A-rich Low_complexity Low_complexity 1 33 0 6 2010 579 188 0 0 chr1 186820580 186820697 -10374735 + (TA)n Simple_repeat Simple_repeat 1 117 0 7 2010 210 37 0 0 chr1 186822533 186822560 -10372872 + (A)n Simple_repeat Simple_repeat 1 27 0 7 2010 33 116 0 0 chr1 186823373 186823546 -10371886 + GC_rich Low_complexity Low_complexity 1 173 0 7 2010 309 51 0 0 chr1 186823637 186823676 -10371756 + (CCG)n Simple_repeat Simple_repeat 3 41 0 7 2010 219 140 53 0 chr1 186823678 186823735 -10371697 + (CCGCG)n Simple_repeat Simple_repeat 1 60 0 7 2010 21 36 0 0 chr1 186823816 186823844 -10371588 + GC_rich Low_complexity Low_complexity 1 28 0 7 2010 21 36 0 0 chr1 186823882 186823910 -10371522 + GC_rich Low_complexity Low_complexity 1 28 0 7 2010 396 0 0 0 chr1 186824785 186824829 -10370603 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 2010 1034 51 72 7 chr1 186825673 186825812 -10369620 - B1_Mus1 SINE Alu 0 148 1 7 2010 198 0 0 0 chr1 186825961 186825983 -10369449 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 2010 332 284 22 52 chr1 186826474 186826608 -10368824 + Charlie5 DNA MER1_type 2240 2369 -255 7 2010 546 230 57 24 chr1 186826608 186826804 -10368628 + B4A SINE B4 2 228 -64 7 2010 279 0 0 0 chr1 186826843 186826874 -10368558 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 2010 596 312 68 4 chr1 186826898 186827146 -10368286 + Charlie5 DNA MER1_type 2360 2623 -1 7 2010 412 315 37 30 chr1 186827510 186827644 -10367788 + RSINE1 SINE B4 1 135 -30 7 2010 25 31 0 0 chr1 186827674 186827706 -10367726 + AT_rich Low_complexity Low_complexity 1 32 0 7 2010 852 251 100 61 chr1 186828046 186828326 -10367106 + B4 SINE B4 2 292 0 7 2010 658 271 95 26 chr1 186828352 186828625 -10366807 + B4A SINE B4 1 292 0 7 2010 27 0 0 0 chr1 186828641 186828668 -10366764 + AT_rich Low_complexity Low_complexity 1 27 0 7 2010 813 210 105 0 chr1 186828668 186828849 -10366583 + B3 SINE B2 17 216 0 7 2010 216 315 69 8 chr1 186829054 186829185 -10366247 + L2c LINE L2 2980 3118 -269 7 2010 236 265 29 0 chr1 186829920 186829988 -10365444 + BC1_Mm scRNA scRNA 14 83 -69 7 2010 280 274 0 14 chr1 186830498 186830572 -10364860 + B3A SINE B2 1 73 -125 7 2010 528 56 0 0 chr1 186830575 186830647 -10364785 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 2010 193 318 89 18 chr1 186830780 186830892 -10364540 - L2a LINE L2 0 3426 3307 7 2010 459 0 0 0 chr1 186831773 186831824 -10363608 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 2010 357 243 0 0 chr1 186832421 186832495 -10362937 + PB1D7 SINE Alu 47 120 0 7 2010 183 42 0 0 chr1 186832598 186832622 -10362810 + (CACTA)n Simple_repeat Simple_repeat 5 28 0 7 2010 225 283 38 0 chr1 186833350 186833403 -10362029 + MER45R DNA Tip100 3 57 -1524 7 2010 534 193 168 0 chr1 186833538 186833657 -10361775 + RSINE1 SINE B4 1 139 -26 7 2010 614 183 125 0 chr1 186833735 186833855 -10361577 + B1_Mur1 SINE Alu 10 144 -5 7 2010 950 256 5 0 chr1 186834225 186834440 -10360992 + B3 SINE B2 1 216 0 7 2010 378 147 0 0 chr1 186834664 186834732 -10360700 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 2010 378 279 22 39 chr1 186834757 186834936 -10360496 + (CATA)n Simple_repeat Simple_repeat 2 177 0 7 2010 244 281 120 71 chr1 186835979 186836163 -10359269 - MER5C DNA MER1_type 0 313 121 7 2010 2910 163 22 18 chr1 186836303 186836375 -10359057 - RLTR18B LTR ERVK -18 494 430 7 2010 1688 182 115 227 chr1 186836375 186837063 -10358369 - RMER19C LTR ERVK 0 611 1 7 2010 2910 163 22 18 chr1 186837063 186837478 -10357954 - RLTR18B LTR ERVK -83 429 5 7 2010 298 270 21 100 chr1 186837816 186837895 -10357537 + Tigger5 DNA MER2_type 2122 2188 -218 7 2010 1573 224 54 8 chr1 186837895 186838246 -10357186 - ORR1D2 LTR MaLR -3 367 1 7 2010 298 270 21 100 chr1 186838246 186838306 -10357126 + Tigger5 DNA MER2_type 2189 2250 -156 7 2010 907 292 61 36 chr1 186838301 186838631 -10356801 - ORR1E LTR MaLR -20 339 2 7 2010 290 171 132 0 chr1 186839321 186839397 -10356035 + Charlie9 DNA MER1_type 2655 2740 -17 7 2010 204 321 54 0 chr1 186839433 186839489 -10355943 - MER5A DNA MER1_type -11 178 120 7 2010 333 248 12 30 chr1 186839727 186839840 -10355592 + ID4_ SINE ID 5 113 -39 7 2010 1849 111 10 171 chr1 186839840 186839950 -10355482 - ORR1A4 LTR MaLR 0 329 222 7 2010 1188 64 0 0 chr1 186839950 186840091 -10355341 - B1_Mus1 SINE Alu -5 143 3 7 2010 1849 111 10 171 chr1 186840091 186840372 -10355060 - ORR1A4 LTR MaLR -108 221 1 7 2010 228 306 8 53 chr1 186840372 186840390 -10355042 + BC1_Mm scRNA scRNA 114 130 -22 7 2010 22 0 0 0 chr1 186840450 186840472 -10354960 + AT_rich Low_complexity Low_complexity 1 22 0 7 2010 225 333 0 0 chr1 186840475 186840550 -10354882 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 2010 327 49 0 0 chr1 186841108 186841149 -10354283 + (A)n Simple_repeat Simple_repeat 1 41 0 7 2010 967 122 39 26 chr1 186841301 186841606 -10353826 + (TAGA)n Simple_repeat Simple_repeat 1 309 0 7 2010 200 243 25 20 chr1 186841608 186841673 -10353759 - MIRb SINE MIR -13 263 193 7 2010 390 262 0 0 chr1 186841722 186841806 -10353626 - B1F1 SINE Alu -1 148 65 7 2010 518 325 25 35 chr1 186841778 186841976 -10353456 - ID_B1 SINE B4 -25 199 4 7 2010 255 342 66 8 chr1 186841983 186842104 -10353328 - MIR SINE MIR -116 146 19 7 2010 712 122 138 0 chr1 186842173 186842296 -10353136 - URR1B DNA MER1_type 0 225 86 7 2010 257 339 71 0 chr1 186842688 186842800 -10352632 - PB1D7 SINE Alu 0 120 1 7 2010 403 311 0 141 chr1 186843186 186843328 -10352104 + PB1 SINE Alu 4 125 -2 7 2010 237 312 0 15 chr1 186843338 186843403 -10352029 + ID4_ SINE ID 2 65 -18 7 2010 798 67 0 0 chr1 186843429 186843534 -10351898 + (GGGAA)n Simple_repeat Simple_repeat 2 106 0 7 2010 26 0 0 0 chr1 186844695 186844721 -10350711 + AT_rich Low_complexity Low_complexity 1 26 0 7 2010 1814 234 60 0 chr1 186845822 186846203 -10349229 - MTD LTR MaLR -15 404 1 7 2010 407 262 380 14 chr1 186846576 186846789 -10348643 - B4A SINE B4 -1 291 1 7 2010 755 281 6 6 chr1 186847443 186847615 -10347817 - MTEb LTR MaLR -207 172 1 7 2010 1204 240 112 18 chr1 186848587 186848926 -10346506 + MTE2b LTR MaLR 9 379 0 7 2010 660 226 17 134 chr1 186849268 186849447 -10345985 + MTEb LTR MaLR 207 364 -15 7 2010 225 0 0 0 chr1 186849448 186849473 -10345959 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 7 2010 918 318 65 79 chr1 186849584 186849839 -10345593 + Charlie14a DNA MER1_type 228 468 -696 7 2010 186 43 0 0 chr1 186849839 186849862 -10345570 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 2010 918 318 65 79 chr1 186849862 186850114 -10345318 + Charlie14a DNA MER1_type 469 728 -436 7 2010 532 231 29 0 chr1 186850136 186850240 -10345192 + B3A SINE B2 1 107 -91 7 2010 219 323 153 29 chr1 186850240 186850273 -10345159 + RSINE1 SINE B4 2 155 -10 7 2010 365 325 4 34 chr1 186851259 186851393 -10344039 - MTE2a LTR MaLR -14 405 273 7 2010 306 321 63 13 chr1 186851517 186851675 -10343757 + Charlie14a DNA MER1_type 994 1159 -5 7 2010 203 348 66 7 chr1 186851801 186851937 -10343495 - L2a LINE L2 -4 3422 3279 7 2010 309 299 124 0 chr1 186852114 186852211 -10343221 + PB1D10 SINE Alu 2 110 -7 7 2010 784 158 0 103 chr1 186852362 186852517 -10342915 - B1_Mur2 SINE Alu 0 149 11 7 2010 928 233 10 10 chr1 186853179 186853387 -10342045 + B3 SINE B2 3 210 -6 7 2010 380 297 18 162 chr1 186854590 186854717 -10340715 - LTR16E2 LTR ERVL -1 567 460 7 2010 1161 84 0 0 chr1 186854717 186855192 -10340240 + (GA)n Simple_repeat Simple_repeat 1 475 0 7 2010 380 297 18 162 chr1 186855192 186855215 -10340217 - LTR16E2 LTR ERVL -109 459 448 7 2010 1059 94 0 0 chr1 186855215 186855395 -10340037 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 2010 380 297 18 162 chr1 186855395 186855517 -10339915 - LTR16E2 LTR ERVL -121 447 332 7 2010 1047 188 109 0 chr1 186856134 186856336 -10339096 + URR1A DNA MER1_type 1 224 -2 7 2010 342 329 62 34 chr1 186856373 186856549 -10338883 + MamRep605 Unknown Unknown 567 747 -129 7 2010 283 277 31 14 chr1 186856751 186856865 -10338567 - MLT1J LTR MaLR -118 442 329 7 2010 337 314 172 0 chr1 186856891 186857060 -10338372 - RMER15 LTR ERVL -2 573 376 7 2010 326 213 0 32 chr1 186857147 186857210 -10338222 + B1F2 SINE Alu 60 120 -29 7 2010 375 336 28 78 chr1 186857186 186857441 -10337991 - MLT1J LTR MaLR -249 263 22 7 2010 590 297 48 48 chr1 186857510 186857740 -10337692 + Lx8 LINE L1 6541 6770 -703 7 2010 559 287 8 37 chr1 186857878 186858012 -10337420 + ID_B1 SINE B4 85 214 -10 7 2010 189 0 0 0 chr1 186858013 186858034 -10337398 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 2010 825 142 0 0 chr1 186858168 186858288 -10337144 - B1_Mus1 SINE Alu -5 143 24 7 2010 1219 171 9 26 chr1 186858749 186858977 -10336455 + URR1A DNA MER1_type 1 224 -2 7 2010 306 331 35 70 chr1 186859491 186859634 -10335798 - MIRb SINE MIR 0 268 131 7 2010 635 180 56 35 chr1 186861085 186861229 -10334203 - B1F2 SINE Alu -1 148 2 7 2010 821 269 38 14 chr1 186861233 186861444 -10333988 - B3 SINE B2 0 216 1 7 2010 486 125 0 0 chr1 186861515 186861595 -10333837 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 2010 781 252 114 63 chr1 186861596 186861850 -10333582 - B4 SINE B4 -23 269 3 7 2010 8240 43 3 11 chr1 186862481 186863142 -10332290 - L1Md_F2 LINE L1 0 6582 5929 7 2010 3143 14 0 6 chr1 186863142 186863490 -10331942 + ORR1A0 LTR MaLR 1 346 0 7 2010 33796 66 11 71 chr1 186863490 186869193 -10326239 - L1Md_F2 LINE L1 -654 5928 591 7 2010 197 305 162 0 chr1 186870754 186870859 -10324573 - L2a LINE L2 -1 3425 3304 7 2010 419 271 19 37 chr1 186870982 186871143 -10324289 + CT-rich Low_complexity Low_complexity 1 158 0 7 2010 265 281 60 38 chr1 186872454 186872587 -10322845 - MIRb SINE MIR -96 172 37 7 2010 809 141 82 0 chr1 186872709 186872844 -10322588 - B1_Mus2 SINE Alu 0 147 2 7 2010 696 268 5 10 chr1 186872988 186873195 -10322237 - L1MA4 LINE L1 -371 5929 5724 7 2010 254 326 35 35 chr1 186873197 186873340 -10322092 - L1MA4 LINE L1 -974 5169 5027 7 2010 291 243 53 26 chr1 186873536 186873612 -10321820 - RMER15 LTR ERVL 0 575 498 7 2010 395 302 71 0 chr1 186873687 186873813 -10321619 + MIR SINE MIR 51 185 -77 7 2010 308 270 70 35 chr1 186874208 186874350 -10321082 + B1F1 SINE Alu 3 149 0 7 2010 252 0 0 0 chr1 186874350 186874378 -10321054 + (A)n Simple_repeat Simple_repeat 1 28 0 8 2010 608 254 212 33 chr1 186875157 186875397 -10320035 + B4A SINE B4 9 291 -1 8 2010 24 0 0 0 chr1 186875428 186875452 -10319980 + AT_rich Low_complexity Low_complexity 1 24 0 8 2010 262 265 59 0 chr1 186876245 186876313 -10319119 - ORR1E LTR MaLR -241 118 47 8 2010 905 144 249 40 chr1 186876642 186876917 -10318515 + ORR1B1 LTR MaLR 1 287 -39 8 2010 1012 48 0 0 chr1 186876935 186877059 -10318373 + B1_Mm SINE Alu 11 134 -13 8 2010 288 0 0 0 chr1 186877059 186877091 -10318341 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 2010 374 94 0 0 chr1 186877091 186877144 -10318288 + ORR1B1 LTR MaLR 342 394 0 8 2010 180 152 0 0 chr1 186877935 186877968 -10317464 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 2010 24 0 0 0 chr1 186879055 186879079 -10316353 + AT_rich Low_complexity Low_complexity 1 24 0 8 2010 482 342 113 0 chr1 186879089 186879355 -10316077 + Lx8 LINE L1 6657 6952 -521 8 2010 471 35 0 0 chr1 186879381 186879438 -10315994 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 2010 670 254 165 36 chr1 186879465 186879714 -10315718 - B4A SINE B4 -7 285 5 8 2010 230 236 24 0 chr1 186880046 186880211 -10315221 + GA-rich Low_complexity Low_complexity 5 173 0 8 2010 495 236 26 15 chr1 186880216 186880688 -10314744 + GA-rich Low_complexity Low_complexity 1 477 0 8 2010 216 0 0 0 chr1 186880900 186880924 -10314508 + (A)n Simple_repeat Simple_repeat 1 24 0 8 2010 659 87 0 9 chr1 186881752 186881857 -10313575 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 8 2010 461 307 103 78 chr1 186882080 186882349 -10313083 + MTEb LTR MaLR 6 329 -50 8 2010 225 0 0 0 chr1 186882349 186882374 -10313058 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 8 2010 461 307 87 80 chr1 186882374 186882423 -10313009 + MTEb LTR MaLR 318 369 -10 8 2010 353 342 25 31 chr1 186882942 186883105 -10312327 + LTR16A LTR ERVL 111 272 -179 8 2010 315 0 0 0 chr1 186883130 186883165 -10312267 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 2010 410 261 0 0 chr1 186883170 186883262 -10312170 - PB1D10 SINE Alu -20 97 6 8 2010 233 75 0 24 chr1 186883360 186883401 -10312031 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 8 2010 328 300 148 85 chr1 186884814 186885226 -10310206 - RMER20A LTR ERVK 0 516 79 8 2010 3161 80 32 7 chr1 186885765 186886230 -10309202 - RLTR44C LTR ERVK -25 477 1 8 2010 693 274 131 8 chr1 186886474 186886546 -10308886 - B4A SINE B4 0 292 161 8 2010 311 262 87 0 chr1 186886546 186886649 -10308783 - PB1D9 SINE Alu -6 114 3 8 2010 693 274 131 8 chr1 186886649 186886733 -10308699 - B4A SINE B4 0 160 2 8 2010 205 29 59 0 chr1 186886926 186886960 -10308472 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 8 2010 718 275 87 8 chr1 186887144 186887408 -10308024 + B4 SINE B4 2 286 -6 8 2010 995 244 34 0 chr1 186887455 186887664 -10307768 + B3 SINE B2 1 216 0 8 2010 669 244 60 58 chr1 186888218 186888430 -10307002 - B3A SINE B2 0 198 1 8 2010 664 126 17 0 chr1 186888456 186888575 -10306857 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 8 2010 183 325 16 58 chr1 186888786 186888907 -10306525 - L2b LINE L2 -203 3172 3057 8 2010 362 192 26 0 chr1 186889229 186889307 -10306125 + ID2 SINE ID 2 81 -2 8 2010 213 39 0 0 chr1 186889815 186889841 -10305591 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 2010 1187 171 46 23 chr1 186890040 186890256 -10305176 - URR1B DNA MER1_type -3 222 2 8 2010 481 205 32 32 chr1 186891659 186891785 -10303647 - RLTR42-int LTR ERVK -4141 1381 1256 8 2010 46 19 0 0 chr1 186892908 186892961 -10302471 + AT_rich Low_complexity Low_complexity 1 53 0 8 2010 313 286 22 0 chr1 186893187 186893278 -10302154 + ORR1D1 LTR MaLR 277 369 -5 8 2010 1248 81 48 5 chr1 186893410 186893596 -10301836 + B2_Mm2 SINE B2 1 194 -1 8 2010 383 262 113 2 chr1 186893716 186893881 -10301551 + L1MB4 LINE L1 5146 5327 -819 8 2010 2385 147 46 7 chr1 186893881 186894313 -10301119 - RMER4A LTR ERVK 0 466 18 8 2010 1052 292 52 59 chr1 186894327 186894437 -10300995 + L1MB4 LINE L1 5327 5440 -728 8 2010 320 252 235 0 chr1 186894437 186894556 -10300876 + B1F2 SINE Alu 3 149 0 8 2010 1052 292 52 59 chr1 186894556 186894940 -10300492 + L1MB4 LINE L1 5441 5818 -350 8 2010 557 325 122 7 chr1 186895110 186895404 -10300028 + L1MB4 LINE L1 5847 6174 -6 8 2010 2341 153 185 37 chr1 186896153 186896662 -10298770 + RMER4B LTR ERVK 1 584 -1 8 2010 330 205 0 0 chr1 186896938 186897021 -10298411 + T-rich Low_complexity Low_complexity 1 83 0 8 2010 339 302 33 136 chr1 186899264 186899536 -10295896 - B4A SINE B4 0 292 49 8 2010 220 273 0 0 chr1 186899679 186899734 -10295698 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 2010 1135 206 5 5 chr1 186899809 186900028 -10295404 - MTEb LTR MaLR -140 239 21 8 2010 1807 51 77 19 chr1 186900355 186900383 -10295049 - ORR1A1 LTR MaLR -70 276 253 8 2010 2739 73 143 139 chr1 186900383 186900893 -10294539 - RLTR1B LTR ERV1 0 512 1 8 2010 1807 51 77 19 chr1 186900893 186901125 -10294307 - ORR1A1 LTR MaLR -94 252 1 8 2010 343 269 67 42 chr1 186901274 186901392 -10294040 - RSINE1 SINE B4 -23 142 22 8 2010 1693 182 27 12 chr1 186901392 186901726 -10293706 + ORR1C2 LTR MaLR 1 339 -45 8 2010 516 232 0 0 chr1 186902336 186902513 -10292919 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 2010 600 194 11 22 chr1 186902536 186902715 -10292717 + (CATA)n Simple_repeat Simple_repeat 4 180 0 8 2010 269 240 20 20 chr1 186902734 186902883 -10292549 + (CATA)n Simple_repeat Simple_repeat 4 152 0 8 2010 399 314 5 0 chr1 186902884 186903092 -10292340 + (CA)n Simple_repeat Simple_repeat 1 208 0 8 2010 185 257 103 51 chr1 186903632 186903710 -10291722 + MER5A DNA MER1_type 1 82 -107 8 2010 3731 172 45 39 chr1 186903871 186904630 -10290802 - RLTR25A LTR ERVK 0 1028 215 8 2010 360 0 0 0 chr1 186904630 186904670 -10290762 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 2010 3731 181 50 27 chr1 186904670 186904873 -10290559 - RLTR25A LTR ERVK -889 214 2 8 2010 261 83 0 0 chr1 186905246 186905282 -10290150 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 2010 180 111 0 0 chr1 186905285 186905312 -10290120 + (GGGAGA)n Simple_repeat Simple_repeat 4 30 0 8 2010 415 268 9 9 chr1 186905419 186905532 -10289900 + MER94 DNA AcHobo 22 134 0 8 2010 195 264 0 19 chr1 186905592 186905646 -10289786 + MER5B DNA MER1_type 3 55 -123 8 2010 258 370 0 0 chr1 186905873 186905965 -10289467 - MLT1F1-int LTR MaLR -1246 141 50 8 2010 1541 189 168 12 chr1 186906267 186906594 -10288838 + ORR1C1 LTR MaLR 1 378 0 8 2010 471 313 193 6 chr1 186907048 186907379 -10288053 - MLT1F1 LTR MaLR 0 569 177 8 2010 650 24 0 24 chr1 186907570 186907655 -10287777 + (TCTCCC)n Simple_repeat Simple_repeat 1 83 0 8 2010 248 260 0 0 chr1 186907855 186907905 -10287527 - B1F2 SINE Alu -99 50 1 8 2010 1535 221 49 3 chr1 186908153 186908497 -10286935 + MTE2b LTR MaLR 20 379 0 8 2011 4755 178 44 19 chr1 186908733 186909670 -10285762 + Lx5 LINE L1 6091 7050 0 8 2011 1813 168 43 35 chr1 186909792 186910168 -10285264 + ORR1C2 LTR MaLR 1 379 -5 8 2011 185 304 49 37 chr1 186911370 186911452 -10283980 + MIRb SINE MIR 37 119 -149 8 2011 1319 254 34 14 chr1 186911498 186911853 -10283579 + ORR1D2 LTR MaLR 3 364 -6 8 2011 261 0 0 0 chr1 186912090 186912119 -10283313 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 8 2011 488 154 131 98 chr1 186912760 186912882 -10282550 + B1_Mur1 SINE Alu 13 138 -11 8 2011 825 87 0 0 chr1 186912882 186912997 -10282435 + (CAAAA)n Simple_repeat Simple_repeat 2 116 0 8 2011 850 233 54 5 chr1 186913011 186913214 -10282218 + ID_B1 SINE B4 5 217 -7 8 2011 425 333 0 0 chr1 186914067 186914178 -10281254 - PB1D10 SINE Alu -1 116 6 8 2011 628 250 221 0 chr1 186914223 186914395 -10281037 + B3 SINE B2 1 210 -6 8 2011 210 37 0 0 chr1 186917003 186917030 -10278402 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 2011 1273 91 29 0 chr1 186917053 186917228 -10278204 + B2_Mm2 SINE B2 1 180 -15 8 2011 410 72 0 5 chr1 186917258 186917322 -10278110 + B2_Mm2 SINE B2 48 109 -107 8 2011 180 0 0 0 chr1 186918465 186918485 -10276947 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 8 2011 319 109 0 35 chr1 186918511 186918568 -10276864 - B2_Mm2 SINE B2 -94 101 47 8 2011 1119 73 36 0 chr1 186918604 186918769 -10276663 - B2_Mm1t SINE B2 -22 171 1 8 2011 363 284 31 47 chr1 186918994 186919123 -10276309 + B4 SINE B4 73 199 -93 8 2011 555 16 0 0 chr1 186919204 186919268 -10276164 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 2011 259 323 37 37 chr1 186919544 186919679 -10275753 - MIRb SINE MIR -9 259 125 8 2011 223 217 22 0 chr1 186920959 186921005 -10274427 - PB1D10 SINE Alu -12 105 59 8 2011 250 315 92 30 chr1 186921031 186921162 -10274270 + MTE2a LTR MaLR 8 146 -213 8 2011 360 125 0 0 chr1 186921326 186921390 -10274042 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 2011 253 311 21 32 chr1 186921621 186921714 -10273718 + MTE2a LTR MaLR 264 355 -24 8 2011 294 158 53 0 chr1 186921726 186921783 -10273649 + MurSatRep1 Unknown Unknown 223 282 -1855 8 2011 183 354 37 0 chr1 186921783 186921865 -10273567 + L2c LINE L2 3280 3364 -23 8 2011 207 286 16 0 chr1 186924140 186924203 -10271229 + GA-rich Low_complexity Low_complexity 1 64 0 8 2011 497 294 64 5 chr1 186925235 186925423 -10270009 - L1MDa LINE L1 -5384 1249 1051 8 2011 489 243 197 37 chr1 186925835 186926134 -10269298 - L1MDa LINE L1 -6202 431 85 8 2011 37 39 0 0 chr1 186926262 186926313 -10269119 + AT_rich Low_complexity Low_complexity 1 51 0 8 2011 543 280 138 43 chr1 186926673 186926927 -10268505 + RMER15 LTR ERVL 279 556 -19 8 2011 270 0 0 0 chr1 186927164 186927194 -10268238 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 2011 477 235 80 7 chr1 186927321 186927458 -10267974 - MTD LTR MaLR 0 419 273 8 2011 441 0 0 0 chr1 186927494 186927543 -10267889 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 2011 279 79 0 0 chr1 186927543 186927581 -10267851 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 2011 611 188 159 0 chr1 186927599 186927737 -10267695 - B3A SINE B2 -38 160 1 8 2011 427 303 63 26 chr1 186927755 186927945 -10267487 - MTD LTR MaLR -218 201 5 8 2011 3739 127 84 49 chr1 186928408 186929077 -10266355 - RLTR17 LTR ERVK 0 692 1 8 2011 319 127 0 0 chr1 186929661 186929716 -10265716 - HAL1-3A_ME LINE L1 -830 2028 1974 8 2011 182 204 20 20 chr1 186929716 186929816 -10265616 + (TG)n Simple_repeat Simple_repeat 2 101 0 9 2011 390 21 0 0 chr1 186929998 186930045 -10265387 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 2011 496 150 0 27 chr1 186930414 186930524 -10264908 - B1_Mus2 SINE Alu -1 146 40 9 2011 500 81 0 13 chr1 186930524 186930599 -10264833 + (TCTCCC)n Simple_repeat Simple_repeat 1 74 0 9 2011 752 197 87 1 chr1 186931264 186931476 -10263956 - L1_Mur3 LINE L1 -1897 4246 3992 9 2011 316 218 114 35 chr1 186931746 186931860 -10263572 + Lx8 LINE L1 6138 6260 -1213 9 2011 329 379 0 0 chr1 186932538 186932707 -10262725 + (CAT)n Simple_repeat Simple_repeat 2 170 0 9 2011 414 367 0 0 chr1 186932726 186932903 -10262529 + (CAT)n Simple_repeat Simple_repeat 1 177 0 9 2011 226 240 76 51 chr1 186932972 186933051 -10262381 - L1MC3 LINE L1 -547 7238 7158 9 2011 389 221 14 54 chr1 186933256 186933388 -10262044 + L1MB8 LINE L1 5664 5793 -385 9 2011 441 322 82 87 chr1 186933423 186933475 -10261957 + L1MB8 LINE L1 5771 5828 -350 9 2011 252 77 0 0 chr1 186933475 186933514 -10261918 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 9 2011 441 322 82 87 chr1 186933514 186933862 -10261570 + L1MB8 LINE L1 5829 6168 -10 9 2011 1304 153 13 59 chr1 186933871 186934107 -10261325 + URR1B DNA MER1_type 1 225 0 9 2011 914 178 31 3 chr1 186934396 186934676 -10260756 + RMER19B LTR ERVK 1 229 -673 9 2011 2664 139 65 29 chr1 186934689 186935215 -10260217 + RMER19B LTR ERVK 349 893 -9 9 2011 190 266 123 15 chr1 186935375 186935440 -10259992 + L2c LINE L2 3108 3179 -208 9 2011 225 94 0 0 chr1 186936344 186936376 -10259056 + (TGG)n Simple_repeat Simple_repeat 1 32 0 9 2011 771 123 57 0 chr1 186936378 186936500 -10258932 + B1_Mus2 SINE Alu 14 142 -5 9 2011 287 331 57 7 chr1 186936560 186936700 -10258732 - MLT1A LTR MaLR 0 374 228 9 2011 261 276 0 39 chr1 186936726 186936828 -10258604 + GA-rich Low_complexity Low_complexity 2 99 0 9 2011 440 298 52 26 chr1 186936841 186936996 -10258436 - MLT1A LTR MaLR -213 161 3 9 2011 433 277 87 43 chr1 186937206 186937391 -10258041 + MLT1A0 LTR MaLR 172 364 -1 9 2011 554 240 13 0 chr1 186938207 186938361 -10257071 + (TATATG)n Simple_repeat Simple_repeat 1 156 0 9 2011 2650 151 11 60 chr1 186938670 186939206 -10256226 - RLTR28 LTR ERVL -14 510 1 9 2011 338 282 3 101 chr1 186939381 186939500 -10255932 + PB1D10 SINE Alu 8 114 -3 9 2011 243 238 131 124 chr1 186939524 186939798 -10255634 + L1M4 LINE L1 777 1052 -5490 9 2011 21 0 0 0 chr1 186940040 186940061 -10255371 + AT_rich Low_complexity Low_complexity 1 21 0 9 2011 731 265 122 0 chr1 186940063 186940252 -10255180 + ID_B1 SINE B4 1 212 -12 9 2011 1268 229 37 97 chr1 186940291 186940692 -10254740 + MTE2a LTR MaLR 1 377 -2 9 2011 180 0 0 0 chr1 186942448 186942468 -10252964 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 2011 181 211 75 19 chr1 186942704 186942757 -10252675 + MIRc SINE MIR 87 142 -126 9 2011 256 307 39 10 chr1 186943026 186943128 -10252304 + RMER15 LTR ERVL 435 539 -36 9 2011 468 0 0 0 chr1 186943237 186943289 -10252143 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 2011 527 266 0 9 chr1 186943629 186943743 -10251689 + PB1D9 SINE Alu 2 114 -6 9 2011 948 169 5 0 chr1 186943743 186943963 -10251469 + GA-rich Low_complexity Low_complexity 1 221 0 9 2011 739 229 169 0 chr1 186944107 186944290 -10251142 + ID_B1 SINE B4 1 214 -10 9 2011 264 59 0 0 chr1 186944290 186944324 -10251108 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 2011 270 56 0 0 chr1 186944593 186944629 -10250803 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 9 2011 2651 160 38 81 chr1 186944842 186945373 -10250059 + RLTR18B LTR ERVK 1 508 -4 9 2011 1131 274 27 75 chr1 186945979 186946417 -10249015 + MTD LTR MaLR 1 417 -2 9 2011 378 0 0 0 chr1 186946645 186946687 -10248745 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 2011 270 193 83 50 chr1 186947928 186947988 -10247444 + B4 SINE B4 209 270 -22 9 2011 576 42 0 0 chr1 186948003 186948074 -10247358 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 2011 507 234 0 0 chr1 186948552 186948697 -10246735 + (CA)n Simple_repeat Simple_repeat 1 145 0 9 2011 1002 208 62 5 chr1 186948828 186949036 -10246396 - ID_B1 SINE B4 -2 222 3 9 2011 211 250 58 0 chr1 186949308 186949360 -10246072 + ID4 SINE ID 4 58 -25 9 2011 279 293 67 25 chr1 186949405 186949524 -10245908 + MTEb LTR MaLR 256 379 0 9 2011 378 139 0 0 chr1 186950244 186950316 -10245116 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 2011 616 320 31 28 chr1 186950417 186950706 -10244726 + Lx9 LINE L1 7228 7517 -127 9 2011 360 178 0 0 chr1 186950708 186950781 -10244651 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 2011 368 227 18 123 chr1 186950804 186950975 -10244457 + Lx9 LINE L1 7477 7629 -15 9 2011 388 277 126 67 chr1 186951222 186951477 -10243955 - B4 SINE B4 -18 274 5 9 2011 691 244 69 85 chr1 186951741 186951906 -10243526 + B3A SINE B2 1 166 -32 9 2011 252 0 0 0 chr1 186951906 186951934 -10243498 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 2011 428 244 69 85 chr1 186951934 186951956 -10243476 + B2_Mm2 SINE B2 164 185 -10 9 2011 540 30 0 0 chr1 186952013 186952079 -10243353 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 2011 234 0 0 0 chr1 186952356 186952382 -10243050 + (A)n Simple_repeat Simple_repeat 1 26 0 9 2011 692 136 0 8 chr1 186952822 186952941 -10242491 - URR1B DNA MER1_type -2 223 106 9 2011 333 173 53 0 chr1 186953121 186953196 -10242236 + B4A SINE B4 3 81 -211 9 2011 558 93 0 0 chr1 186953312 186953398 -10242034 + (TCC)n Simple_repeat Simple_repeat 1 86 0 9 2011 254 287 16 19 chr1 186954660 186954925 -10240507 + (CATATA)n Simple_repeat Simple_repeat 1 263 0 9 2011 426 79 0 0 chr1 186954926 186954989 -10240443 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 2011 351 0 0 0 chr1 186955326 186955365 -10240067 + (TAA)n Simple_repeat Simple_repeat 2 40 0 9 2011 25 0 0 0 chr1 186955808 186955833 -10239599 + AT_rich Low_complexity Low_complexity 1 25 0 9 2011 329 268 158 0 chr1 186956077 186956204 -10239228 + MER5B DNA MER1_type 27 173 -5 9 2011 186 329 50 12 chr1 186956255 186956335 -10239097 - L2b LINE L2 -2 3424 3342 9 2011 225 338 37 61 chr1 186956466 186956507 -10238925 - L2b LINE L2 -215 3160 3121 9 2011 4890 87 46 19 chr1 186956507 186957243 -10238189 + RMER6A LTR ERVK 1 756 0 9 2011 225 338 37 61 chr1 186957243 186957365 -10238067 - L2b LINE L2 -255 3120 3002 9 2011 1332 229 27 3 chr1 186957537 186957831 -10237601 + RLTR14 LTR ERV1 1 301 -81 9 2011 314 243 83 62 chr1 186957878 186958023 -10237409 - MLT1B LTR MaLR -227 163 16 9 2011 685 228 70 16 chr1 186958497 186958684 -10236748 - Lx2B LINE L1 -6 6994 6798 9 2011 510 17 0 0 chr1 186958694 186958753 -10236679 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 2011 2581 122 54 17 chr1 186958767 186959177 -10236255 - RMER1A Other Other -142 888 464 9 2011 294 253 62 0 chr1 186959177 186959259 -10236173 - ERVL-B4-int LTR ERVL -2317 3397 3254 9 2011 372 302 20 86 chr1 186959485 186959637 -10235795 - B4A SINE B4 -106 186 45 9 2011 385 284 50 0 chr1 186959699 186959840 -10235592 + B1F SINE Alu 1 148 -1 9 2011 21 36 0 0 chr1 186960041 186960069 -10235363 + AT_rich Low_complexity Low_complexity 1 28 0 9 2011 371 179 7 50 chr1 186960621 186960762 -10234670 + CT-rich Low_complexity Low_complexity 1 135 0 9 2011 287 330 11 0 chr1 186961327 186961421 -10234011 - ID_B1 SINE B4 -48 176 82 9 2011 21 36 0 0 chr1 186961682 186961710 -10233722 + AT_rich Low_complexity Low_complexity 1 28 0 9 2011 21 0 0 0 chr1 186961785 186961806 -10233626 + AT_rich Low_complexity Low_complexity 1 21 0 9 2011 235 277 59 0 chr1 186962051 186962152 -10233280 - Charlie2a DNA MER1_type -2179 682 576 9 2011 378 231 71 126 chr1 186962650 186962711 -10232721 - Tigger5 DNA MER2_type -19 2387 2341 9 2011 724 139 122 41 chr1 186962711 186962883 -10232549 + B3A SINE B2 3 188 -10 9 2011 378 231 71 126 chr1 186962883 186963004 -10232428 - Tigger5 DNA MER2_type -66 2340 2215 9 2011 923 280 40 10 chr1 186963035 186963334 -10232098 - Tigger5 DNA MER2_type -2098 308 1 9 2011 692 279 11 90 chr1 186963372 186963651 -10231781 + Lx8 LINE L1 7214 7470 -3 9 2011 315 154 0 0 chr1 186964892 186964957 -10230475 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 2011 302 209 53 6 chr1 186964984 186965089 -10230343 + B1F SINE Alu 13 149 0 9 2011 257 321 75 115 chr1 186965188 186965519 -10229913 - ORR1E LTR MaLR 0 359 42 9 2011 1199 79 6 0 chr1 186965635 186965812 -10229620 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 9 2011 367 237 244 30 chr1 186965826 186965961 -10229471 - RSINE1 SINE B4 0 165 2 9 2011 456 224 74 49 chr1 186968686 186968808 -10226624 + B3 SINE B2 47 171 -45 9 2011 1602 153 20 54 chr1 186968808 186969105 -10226327 + RMER1B Other Other 495 781 -285 9 2011 213 39 0 0 chr1 186969108 186969134 -10226298 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 2011 1211 82 0 6 chr1 186969137 186969309 -10226123 - B2_Mm2 SINE B2 -22 173 3 9 2011 1204 165 144 8 chr1 186969309 186969545 -10225887 + RMER1B Other Other 770 1032 -34 9 2011 204 40 0 0 chr1 186969545 186969570 -10225862 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 2011 1204 165 144 8 chr1 186969570 186969590 -10225842 + RMER1B Other Other 1033 1059 -7 9 2011 466 345 42 50 chr1 186970589 186970848 -10224584 - MLT1H1 LTR MaLR -286 269 13 9 2011 369 0 0 0 chr1 186971364 186971405 -10224027 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 2011 2258 165 110 38 chr1 186971415 186971887 -10223545 - RLTR18B LTR ERVK -4 508 3 9 2011 3239 43 33 2 chr1 186971937 186972332 -10223100 - MTB_Mm LTR MaLR 0 407 1 9 2011 421 72 0 42 chr1 186973483 186973555 -10221877 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 9 2011 416 263 32 140 chr1 186974458 186974679 -10220753 + MER34A LTR ERV1 5 201 -370 9 2011 323 291 52 104 chr1 186977128 186977339 -10218093 + MamRep4096 DNA hAT? 3 202 -224 9 2011 647 294 22 6 chr1 186978024 186978202 -10217230 + B3A SINE B2 2 182 -16 9 2011 323 107 0 35 chr1 186978205 186978263 -10217169 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 9 2011 1141 156 155 33 chr1 186978413 186978530 -10216902 - RMER1C Other Other 0 1342 1223 9 2011 270 81 0 0 chr1 186978530 186978567 -10216865 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 9 2011 1141 156 155 33 chr1 186978567 186978694 -10216738 - RMER1C Other Other -120 1222 1068 9 2011 1350 163 60 74 chr1 186978808 186979106 -10216326 - RMER1C Other Other -277 1065 772 9 2011 1652 123 50 37 chr1 186979106 186979427 -10216005 + RMER4A LTR ERVK 1 325 -141 1 2011 36149 34 0 0 chr1 186979427 186984896 -10210536 + L1Md_T LINE L1 25 5589 -297 1 2011 9171 5 0 0 chr1 186984896 186985892 -10209540 + L1Md_T LINE L1 5590 6585 0 1 2011 822 122 75 0 chr1 186985895 186986042 -10209390 + RMER4A LTR ERVK 309 466 0 1 2011 589 271 35 126 chr1 186986047 186986469 -10208963 - RMER1C Other Other -547 795 412 1 2011 505 228 24 31 chr1 186986800 186986927 -10208505 - MTE2b LTR MaLR -197 182 57 1 2011 282 67 0 74 chr1 186987355 186987436 -10207996 + (CCCCCA)n Simple_repeat Simple_repeat 1 75 0 1 2011 567 239 108 199 chr1 186987612 186987679 -10207753 - MTEb LTR MaLR 0 379 313 1 2011 1103 45 0 0 chr1 186987679 186987812 -10207620 + B1_Mm SINE Alu 1 133 -14 1 2011 213 65 0 0 chr1 186987814 186987845 -10207587 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 2011 567 239 108 199 chr1 186987845 186988191 -10207241 - MTEb LTR MaLR -67 312 4 1 2011 423 311 69 30 chr1 186989408 186989610 -10205822 + L1MB5 LINE L1 5965 6174 0 1 2011 736 293 55 22 chr1 186989634 186989906 -10205526 + B4A SINE B4 1 281 -11 1 2011 344 68 34 0 chr1 186989980 186990039 -10205393 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 1 2011 305 231 77 0 chr1 186990221 186990299 -10205133 + MTEa LTR MaLR 293 376 -3 1 2011 1005 55 0 0 chr1 186990612 186990740 -10204692 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 1 2011 297 344 12 43 chr1 186991512 186991676 -10203756 + MER63D DNA AcHobo 816 974 -87 1 2011 241 352 37 0 chr1 186992411 186992573 -10202859 + L1MC1 LINE L1 6154 6321 -12 1 2011 4825 93 14 1 chr1 186992564 186993271 -10202161 + MusHAL1 LINE L1 1669 2384 -328 1 2011 236 298 11 87 chr1 186993480 186993528 -10201904 + B4 SINE B4 2 46 -246 1 2011 4278 61 54 0 chr1 186993528 186994082 -10201350 - MT2B2 LTR ERVL 0 584 1 1 2011 236 298 11 87 chr1 186994082 186994125 -10201307 + B4 SINE B4 47 86 -206 1 2011 315 0 0 0 chr1 186994191 186994226 -10201206 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 2011 622 252 15 0 chr1 186994777 186994912 -10200520 + B1F SINE Alu 4 140 -9 1 2011 432 0 0 0 chr1 186995289 186995337 -10200095 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 2011 651 136 0 0 chr1 186995527 186995637 -10199795 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 1 2011 2758 73 143 139 chr1 186995811 186996321 -10199111 - RLTR1B LTR ERV1 0 512 1 1 2011 195 286 0 0 chr1 186996552 186996629 -10198803 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 2011 332 295 13 114 chr1 186996679 186996828 -10198604 + RSINE1 SINE B4 7 140 -25 1 2011 279 0 0 0 chr1 186996830 186996861 -10198571 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 2011 235 184 40 20 chr1 186996985 186997035 -10198397 - PB1 SINE Alu -7 120 70 1 2011 3189 64 0 37 chr1 186998498 186998935 -10196497 + BGLII LTR ERVK 1 421 0 1 2011 835 254 48 5 chr1 186999039 186999245 -10196187 - B4 SINE B4 -77 215 1 1 2011 982 302 73 26 chr1 186999292 186999673 -10195759 - MER88 LTR ERVL 0 464 66 1 2011 1191 184 7 106 chr1 186999673 186999997 -10195435 + RMER19C LTR ERVK 1 494 -408 1 2011 1345 253 7 93 chr1 187000000 187000428 -10195004 + RMER19C LTR ERVK 221 611 0 1 2011 508 295 62 14 chr1 187000556 187000766 -10194666 - L1_Rod LINE L1 -6869 303 84 2 2011 418 156 11 22 chr1 187000769 187000861 -10194571 + MTD LTR MaLR 329 419 0 3 2011 591 245 35 63 chr1 187000883 187001155 -10194277 + L1MEf LINE L1 2060 2323 -3823 4 2011 218 196 19 56 chr1 187001175 187001229 -10194203 + BC1_Mm scRNA scRNA 1 52 -100 5 2011 1418 52 47 0 chr1 187001297 187001469 -10193963 + B2_Mm2 SINE B2 2 181 -14 6 2011 256 295 0 0 chr1 187002019 187002101 -10193331 + MLT1J1 LTR MaLR 70 190 -322 7 2011 2210 207 105 14 chr1 187002286 187002626 -10192806 + L1_Rod LINE L1 746 1123 -6485 8 2011 749 84 8 0 chr1 187002626 187002745 -10192687 + (CA)n Simple_repeat Simple_repeat 2 121 0 9 2011 2210 211 91 10 chr1 187002745 187003276 -10192156 + L1_Rod LINE L1 1124 1700 -4147 8 2011 230 229 33 0 chr1 187003276 187003337 -10192095 - MTEa LTR MaLR -316 63 1 1 2011 833 235 172 72 chr1 187003917 187004103 -10191329 + B4A SINE B4 1 229 -63 1 2011 1118 99 0 0 chr1 187004103 187004244 -10191188 + B1_Mus1 SINE Alu 1 141 -7 1 2011 186 43 0 0 chr1 187004247 187004270 -10191162 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 2011 3018 48 48 0 chr1 187004280 187004652 -10190780 + RLTR10 LTR ERVK 1 390 0 1 2011 833 235 172 72 chr1 187004652 187004712 -10190720 + B4A SINE B4 230 288 -4 1 2011 333 100 0 0 chr1 187004816 187004866 -10190566 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 2011 306 402 0 0 chr1 187004880 187005054 -10190378 + (CA)n Simple_repeat Simple_repeat 2 175 0 1 2011 183 80 0 0 chr1 187005172 187005197 -10190235 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 2011 210 260 0 0 chr1 187005648 187005721 -10189711 + CT-rich Low_complexity Low_complexity 2 74 0 1 2011 618 220 133 36 chr1 187006169 187006334 -10189098 + B3 SINE B2 12 192 -24 1 2011 1002 52 0 0 chr1 187007129 187007265 -10188167 + B1_Mus2 SINE Alu 12 147 0 1 2011 371 240 125 0 chr1 187008517 187008613 -10186819 + PB1D10 SINE Alu 10 117 0 2 2011 1123 245 24 0 chr1 187008821 187009070 -10186362 + MTE2b LTR MaLR 123 377 -2 2 2011 715 211 76 22 chr1 187009108 187009292 -10186140 - ID_B1 SINE B4 -19 205 12 2 2011 186 355 18 9 chr1 187010019 187010130 -10185302 - MIR3 SINE MIR -10 198 87 2 2011 238 319 120 8 chr1 187010235 187010352 -10185080 - MamSINE1 SINE tRNA -148 142 13 2 2011 311 246 0 0 chr1 187010750 187010815 -10184617 + ID_B1 SINE B4 86 150 -74 2 2011 248 196 53 18 chr1 187010764 187010821 -10184611 + PB1D7 SINE Alu 19 77 -43 2 2011 408 240 222 48 chr1 187011984 187012295 -10183137 - RMER15 LTR ERVL 0 575 211 2 2011 22 0 0 0 chr1 187012487 187012509 -10182923 + AT_rich Low_complexity Low_complexity 1 22 0 2 2011 380 290 14 58 chr1 187012810 187012949 -10182483 - RCHARR1 DNA MER1_type -2 972 840 2 2011 580 343 43 24 chr1 187012957 187013386 -10182046 + Lx9 LINE L1 6876 7441 -203 3 2011 306 73 0 0 chr1 187013386 187013427 -10182005 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 2011 601 213 73 0 chr1 187013553 187013717 -10181715 - RCHARR1 DNA MER1_type -111 863 688 2 2011 463 253 145 6 chr1 187013830 187014009 -10181423 - ORR1D2 LTR MaLR 0 370 167 3 2011 444 192 24 0 chr1 187014091 187014216 -10181216 - RCHARR1 DNA MER1_type -101 873 746 3 2011 883 69 0 0 chr1 187014222 187014352 -10181080 - B1_Mus1 SINE Alu 0 148 19 3 2011 731 189 35 0 chr1 187014417 187014560 -10180872 - B1_Mur2 SINE Alu 0 149 2 3 2011 206 238 0 24 chr1 187014584 187014666 -10180766 + (TGAA)n Simple_repeat Simple_repeat 1 80 0 3 2011 494 205 3 23 chr1 187015046 187015161 -10180271 + PB1D10 SINE Alu 10 117 0 3 2011 242 282 193 30 chr1 187015161 187015296 -10180136 + RSINE1 SINE B4 5 161 -4 3 2011 409 260 21 97 chr1 187015296 187015325 -10180107 + B1F1 SINE Alu 115 143 -6 3 2011 319 184 53 0 chr1 187016547 187016623 -10178809 + PB1D9 SINE Alu 34 113 -7 3 2011 236 275 12 48 chr1 187016772 187016856 -10178576 - MLT1A1 LTR MaLR -279 129 49 4 2011 343 255 10 41 chr1 187017132 187017230 -10178202 - RSINE1 SINE B4 -69 96 2 4 2011 493 231 33 33 chr1 187017313 187017434 -10177998 - ID_B1 SINE B4 -38 186 66 4 2011 211 309 0 0 chr1 187017671 187017726 -10177706 - L2c LINE L2 -78 3309 3255 4 2011 648 248 0 26 chr1 187018742 187018757 -10176675 - B1_Mur1 SINE Alu 0 149 135 4 2011 180 0 0 0 chr1 187018757 187018777 -10176655 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 2011 648 248 0 26 chr1 187018777 187018914 -10176518 - B1_Mur1 SINE Alu -15 134 1 4 2011 2179 221 54 175 chr1 187019008 187020157 -10175275 + L1_Rod LINE L1 4602 5611 -236 4 2011 618 250 7 7 chr1 187020187 187020340 -10175092 + L1_Rod LINE L1 5563 5715 -132 4 2011 713 170 0 12 chr1 187021047 187021377 -10174055 + (CA)n Simple_repeat Simple_repeat 1 325 0 4 2011 759 157 0 0 chr1 187021393 187021621 -10173811 + (CA)n Simple_repeat Simple_repeat 1 228 0 4 2011 253 242 30 0 chr1 187021908 187021974 -10173458 - MLT1J1 LTR MaLR -308 136 69 4 2011 1031 184 19 10 chr1 187022226 187022435 -10172997 - B3 SINE B2 0 216 6 5 2011 348 232 0 111 chr1 187022465 187022621 -10172811 - B3A SINE B2 0 216 84 5 2011 202 189 0 0 chr1 187022696 187022733 -10172699 + C-rich Low_complexity Low_complexity 1 37 0 5 2011 1245 247 84 26 chr1 187022820 187023202 -10172230 - MTD LTR MaLR -14 405 2 5 2011 794 251 14 50 chr1 187023459 187023677 -10171755 + ORR1D2 LTR MaLR 3 212 -158 5 2011 263 160 0 20 chr1 187023689 187023740 -10171692 + ORR1D2 LTR MaLR 321 370 0 5 2011 203 237 65 13 chr1 187023828 187023982 -10171450 + CT-rich Low_complexity Low_complexity 3 164 0 5 2011 389 289 14 35 chr1 187024005 187024235 -10171197 + CT-rich Low_complexity Low_complexity 1 225 0 5 2011 694 258 39 6 chr1 187024352 187024531 -10170901 + B3A SINE B2 4 188 -10 5 2011 304 258 50 25 chr1 187024536 187024666 -10170766 - MIR SINE MIR -128 140 2 5 2011 682 269 91 0 chr1 187025414 187025611 -10169821 - B3 SINE B2 0 216 2 5 2011 1048 92 183 0 chr1 187026038 187026202 -10169230 - B2_Mm2 SINE B2 0 195 2 5 2011 2906 68 0 10 chr1 187026240 187026624 -10168808 + L1Md_F2 LINE L1 6202 6581 -1 6 2011 371 279 44 18 chr1 187026714 187026827 -10168605 + PB1D10 SINE Alu 1 116 -1 6 2011 188 350 79 10 chr1 187026940 187027041 -10168391 - MIRm SINE MIR -8 268 161 6 2011 24 0 0 0 chr1 187029792 187029816 -10165616 + AT_rich Low_complexity Low_complexity 1 24 0 6 2011 543 294 28 0 chr1 187029841 187029984 -10165448 + RSINE1 SINE B4 3 149 -16 6 2011 252 0 0 0 chr1 187029995 187030023 -10165409 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 2011 247 136 152 111 chr1 187030097 187030196 -10165236 - B1F SINE Alu -8 109 7 6 2011 320 256 76 2 chr1 187030196 187030331 -10165101 + L2a LINE L2 3024 3166 -221 6 2011 264 255 32 11 chr1 187030384 187030479 -10164953 + MER3 DNA MER1_type 42 138 -71 6 2011 957 184 35 5 chr1 187031478 187031680 -10163752 + B3 SINE B2 7 214 -2 6 2011 2305 158 68 2 chr1 187031724 187032118 -10163314 + MTC LTR MaLR 1 420 -1 7 2011 377 207 97 24 chr1 187033058 187033182 -10162250 + L1M4 LINE L1 4666 4798 -1348 7 2011 1313 169 87 12 chr1 187033347 187033761 -10161671 - RMER17C LTR ERVK -517 441 16 7 2011 292 316 137 7 chr1 187033841 187033994 -10161438 - MER3 DNA MER1_type -16 193 21 7 2011 219 246 42 42 chr1 187034467 187034539 -10160893 - RSINE1 SINE B4 -33 132 61 7 2011 345 240 10 20 chr1 187034561 187034659 -10160773 - BC1_Mm scRNA scRNA -53 99 3 7 2011 21 0 0 0 chr1 187034659 187034680 -10160752 + AT_rich Low_complexity Low_complexity 1 21 0 7 2011 694 289 50 13 chr1 187034686 187034989 -10160443 - L1MA5 LINE L1 -3 6297 5980 7 2011 602 255 29 7 chr1 187035074 187035212 -10160220 - B1F SINE Alu -1 148 8 7 2011 244 306 26 61 chr1 187035114 187035229 -10160203 - MT2B LTR ERVL -338 263 153 7 2011 1091 279 66 11 chr1 187035230 187035593 -10159839 - L1MA5 LINE L1 -367 5933 5551 7 2011 281 149 39 39 chr1 187035699 187035776 -10159656 - L1MA5 LINE L1 -968 5335 5259 7 2011 288 218 42 100 chr1 187035951 187036191 -10159241 - RMER17C LTR ERVK -144 266 41 8 2011 1166 233 82 0 chr1 187036384 187036663 -10158769 - Lx8 LINE L1 -84 7389 7088 8 2011 1114 49 42 0 chr1 187036842 187036984 -10158448 + B1_Mus1 SINE Alu 1 148 0 8 2011 316 278 88 31 chr1 187037122 187037315 -10158117 - L1MA9 LINE L1 -11 6301 6098 8 2011 1678 36 0 0 chr1 187037541 187037734 -10157698 + B2_Mm1t SINE B2 1 193 0 8 2011 208 233 0 0 chr1 187037734 187037777 -10157655 + GA-rich Low_complexity Low_complexity 4 46 0 8 2011 21 0 0 0 chr1 187037779 187037800 -10157632 + AT_rich Low_complexity Low_complexity 1 21 0 8 2011 687 285 118 39 chr1 187037987 187038429 -10157003 + L1_Mur3 LINE L1 4195 4671 -1209 8 251 2025 290 103 28 chr1 187038840 187039996 -10155436 + Lx9 LINE L1 4690 5958 -1686 8 2012 218 299 23 11 chr1 187040308 187040396 -10155036 - MIR SINE MIR -95 167 79 8 2012 283 250 100 0 chr1 187040478 187040578 -10154854 + MER33 DNA MER1_type 18 127 -197 9 2012 32 0 0 0 chr1 187040619 187040651 -10154781 + AT_rich Low_complexity Low_complexity 1 32 0 9 2012 189 147 0 0 chr1 187042202 187042236 -10153196 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 9 2012 963 136 7 0 chr1 187042393 187042540 -10152892 - B1_Mus1 SINE Alu 0 148 1 9 2012 344 214 228 18 chr1 187042678 187042792 -10152640 - B1_Mur1 SINE Alu -9 140 3 9 2012 213 114 22 43 chr1 187042867 187042913 -10152519 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 9 2012 880 248 10 14 chr1 187042928 187043137 -10152295 + ID_B1 SINE B4 16 223 -1 9 2012 363 153 94 0 chr1 187043198 187043283 -10152149 + B3A SINE B2 106 198 0 9 2012 989 105 35 7 chr1 187044461 187044605 -10150827 + B1_Mus1 SINE Alu 1 148 0 9 2012 1963 98 3 69 chr1 187044737 187045086 -10150346 + IAPLTR1a_Mm LTR ERVK 1 326 -11 9 2012 621 233 0 58 chr1 187045111 187045266 -10150166 - ID_B1 SINE B4 -1 223 78 1 2012 557 227 49 21 chr1 187045475 187045619 -10149813 + B1F2 SINE Alu 2 149 0 1 2012 569 200 119 40 chr1 187045812 187045963 -10149469 - RSINE1 SINE B4 0 165 3 1 2012 252 0 0 0 chr1 187046309 187046337 -10149095 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 2012 279 267 54 32 chr1 187046576 187046669 -10148763 - L2a LINE L2 -6 3420 3326 1 2012 189 147 0 0 chr1 187046824 187046858 -10148574 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 1 2012 329 220 184 8 chr1 187047204 187047438 -10147994 - L1MC LINE L1 -3012 3134 2860 1 2012 982 289 63 72 chr1 187047445 187047919 -10147513 - MER44B DNA MER2_type 0 550 81 1 2012 367 309 130 0 chr1 187047980 187048290 -10147142 - L1M4 LINE L1 -3299 2847 2490 1 2012 834 251 185 28 chr1 187048656 187049115 -10146317 - MT2A LTR ERVL 0 533 3 1 2012 562 251 80 10 chr1 187049234 187049435 -10145997 - L1MB7 LINE L1 -35 6149 5935 1 2012 306 0 0 0 chr1 187051088 187051122 -10144310 + (T)n Simple_repeat Simple_repeat 1 34 0 1 2012 1084 61 0 0 chr1 187051122 187051269 -10144163 - B1_Mus1 SINE Alu 0 148 2 1 2012 25 0 0 0 chr1 187052545 187052570 -10142862 + AT_rich Low_complexity Low_complexity 1 25 0 1 2012 285 258 0 0 chr1 187053170 187053232 -10142200 + BC1_Mm scRNA scRNA 29 90 -62 1 2012 1810 156 29 9 chr1 187054883 187055233 -10140199 - ORR1B2 LTR MaLR -10 357 1 1 2012 342 0 0 0 chr1 187056038 187056076 -10139356 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 2012 378 0 0 0 chr1 187056076 187056118 -10139314 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 2012 459 233 0 46 chr1 187056123 187056231 -10139201 - RSINE1 SINE B4 -42 123 21 1 2012 195 129 0 0 chr1 187056243 187056274 -10139158 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 2012 465 66 0 0 chr1 187056300 187056361 -10139071 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 1 2012 1278 70 16 5 chr1 187056361 187056547 -10138885 - L1_Mus3 LINE L1 -2 6636 6449 1 2012 500 258 99 70 chr1 187057130 187057301 -10138131 - B4A SINE B4 0 292 117 1 2012 213 196 0 0 chr1 187058172 187058223 -10137209 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 2012 255 317 9 47 chr1 187058329 187058435 -10136997 - B3 SINE B2 -6 210 109 1 2012 3311 62 0 5 chr1 187058470 187058877 -10136555 - MTB_Mm LTR MaLR -2 405 1 1 2012 239 318 91 91 chr1 187058905 187059026 -10136406 + MT2B LTR ERVL 120 240 -361 1 2012 335 339 0 41 chr1 187058935 187059058 -10136374 + ID_B1 SINE B4 78 195 -29 1 2012 632 230 16 16 chr1 187058948 187059076 -10136356 + B1_Mur1 SINE Alu 10 137 -12 1 2012 182 163 41 0 chr1 187059076 187059125 -10136307 + C-rich Low_complexity Low_complexity 5 55 0 1 2012 586 220 60 8 chr1 187059549 187059682 -10135750 - URR1B DNA MER1_type -84 141 2 1 2012 849 191 95 5 chr1 187059986 187060175 -10135257 + B3 SINE B2 2 207 -9 1 2012 1742 177 38 23 chr1 187060360 187060702 -10134730 - ORR1C1 LTR MaLR -2 376 30 1 2012 3611 22 0 0 chr1 187060724 187061125 -10134307 + MERVL-int LTR ERVL 4764 5164 -321 1 2012 234 246 61 15 chr1 187061675 187061741 -10133691 + ID4_ SINE ID 2 70 -13 1 2012 420 37 0 0 chr1 187061840 187061894 -10133538 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 2012 234 0 0 0 chr1 187061925 187061951 -10133481 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 2012 765 157 0 0 chr1 187061951 187062085 -10133347 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 2012 405 176 169 31 chr1 187062210 187062327 -10133105 - B1_Mur2 SINE Alu 0 149 3 1 2012 331 289 176 60 chr1 187063246 187063307 -10132125 - B4A SINE B4 -13 279 220 1 2012 213 39 0 0 chr1 187063307 187063333 -10132099 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 1 2012 331 289 176 60 chr1 187063333 187063521 -10131911 - B4A SINE B4 -73 219 1 1 2012 301 323 10 0 chr1 187064978 187065077 -10130355 + PB1D7 SINE Alu 3 102 -18 1 2012 201 94 0 0 chr1 187065105 187065137 -10130295 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 2012 38 0 0 0 chr1 187065149 187065187 -10130245 + AT_rich Low_complexity Low_complexity 1 38 0 1 2012 837 116 12 125 chr1 187065865 187066033 -10129399 + B1_Mur4 SINE Alu 2 150 0 1 2012 984 199 55 0 chr1 187067175 187067356 -10128076 + URR1A DNA MER1_type 36 226 0 1 2012 250 240 0 0 chr1 187067624 187067674 -10127758 + B1_Mur2 SINE Alu 99 148 -1 1 2012 230 299 23 11 chr1 187068103 187068191 -10127241 - L2 LINE L2 -1391 2028 1940 1 2012 6205 67 104 13 chr1 187068313 187069208 -10126224 - Lx3_Mus LINE L1 0 7009 6034 1 2012 351 0 0 0 chr1 187069208 187069247 -10126185 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1 2012 763 203 27 7 chr1 187070833 187070982 -10124450 + ID_B1 SINE B4 55 206 -18 1 2012 387 0 0 0 chr1 187070996 187071039 -10124393 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 2012 210 256 32 118 chr1 187071182 187071275 -10124157 - L2 LINE L2 -2877 542 458 1 2012 180 111 0 0 chr1 187072346 187072373 -10123059 + (T)n Simple_repeat Simple_repeat 1 27 0 1 2012 766 114 88 44 chr1 187072373 187072510 -10122922 - B1_Mus1 SINE Alu 0 148 6 1 2012 406 283 91 111 chr1 187072957 187073255 -10122177 - ORR1E LTR MaLR -4 355 64 1 2012 297 0 0 0 chr1 187074167 187074200 -10121232 + (TCC)n Simple_repeat Simple_repeat 3 35 0 1 2012 181 327 37 37 chr1 187074418 187074526 -10120906 - L3 LINE CR1 -3423 1066 959 1 2012 380 288 214 57 chr1 187077048 187077328 -10118104 - MER21B LTR ERV1 -398 465 142 1 2012 275 257 98 111 chr1 187077488 187077641 -10117791 - MER21B LTR ERV1 -708 155 5 1 2012 1053 141 0 0 chr1 187077702 187077851 -10117581 + B1_Mur4 SINE Alu 1 149 -1 1 2012 557 172 0 15 chr1 187078464 187078544 -10116888 + polypyrimidine Low_complexity Low_complexity 49 128 0 1 2012 1111 74 23 6 chr1 187078544 187078721 -10116711 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 2012 557 172 0 15 chr1 187078721 187078754 -10116678 + polypyrimidine Low_complexity Low_complexity 17 48 0 1 2012 1211 62 11 11 chr1 187078754 187078934 -10116498 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 2012 557 172 0 15 chr1 187078934 187078949 -10116483 + polypyrimidine Low_complexity Low_complexity 2 16 0 1 2012 302 305 4 4 chr1 187078949 187079058 -10116374 - PB1D9 SINE Alu 0 120 9 1 2012 216 312 88 0 chr1 187079010 187079090 -10116342 - B4A SINE B4 -148 144 58 1 2012 1011 301 26 16 chr1 187080012 187080397 -10115035 + Lx8 LINE L1 6941 7329 -144 1 2012 516 199 72 14 chr1 187080803 187080941 -10114491 + B1_Mur1 SINE Alu 2 147 -2 1 2012 225 83 0 0 chr1 187081667 187081703 -10113729 + (A)n Simple_repeat Simple_repeat 1 36 0 1 2012 497 176 25 19 chr1 187082785 187082903 -10112529 - ORR1C2 LTR MaLR -8 376 248 1 2012 1290 247 11 11 chr1 187083613 187083883 -10111549 + B4A SINE B4 1 270 -22 1 2012 363 60 0 0 chr1 187083883 187083933 -10111499 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 2012 737 159 54 61 chr1 187084024 187084171 -10111261 + B1_Mur2 SINE Alu 4 149 0 1 2012 968 68 67 15 chr1 187084791 187084926 -10110506 + B1_Mus1 SINE Alu 6 147 -1 1 2012 357 24 0 0 chr1 187085016 187085058 -10110374 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2012 994 176 72 5 chr1 187085713 187085907 -10109525 + B3 SINE B2 3 209 -7 1 2012 652 229 261 42 chr1 187086075 187086412 -10109020 - MTD LTR MaLR -8 411 1 1 2012 225 266 125 0 chr1 187087966 187088030 -10107402 - PB1D10 SINE Alu -28 89 18 1 2012 195 129 0 0 chr1 187088711 187088742 -10106690 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 2012 446 326 43 29 chr1 187088770 187089048 -10106384 - B4A SINE B4 -9 283 2 1 2012 965 89 221 31 chr1 187089076 187089239 -10106193 - B2_Mm2 SINE B2 0 195 2 1 2012 343 290 47 57 chr1 187089518 187089624 -10105808 + PB1 SINE Alu 1 105 -22 1 2012 430 272 158 31 chr1 187089884 187090138 -10105294 + B4A SINE B4 5 290 -2 1 2012 300 216 61 113 chr1 187090287 187090402 -10105030 + ID_B1 SINE B4 111 219 -5 1 2012 630 0 0 0 chr1 187091195 187091265 -10104167 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 2012 263 221 14 81 chr1 187091295 187091369 -10104063 - ID2 SINE ID -13 70 2 1 2012 188 0 74 0 chr1 187091481 187091508 -10103924 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 2012 1151 43 0 35 chr1 187091508 187091651 -10103781 - B1_Mm SINE Alu -9 138 1 1 2012 432 0 0 0 chr1 187092858 187092906 -10102526 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 2012 207 0 0 0 chr1 187092921 187092944 -10102488 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1 2012 1201 74 0 0 chr1 187092959 187093107 -10102325 - B1_Mus1 SINE Alu 0 148 1 1 2012 1010 116 122 0 chr1 187093109 187093281 -10102151 - B2_Mm2 SINE B2 -1 194 2 1 2012 359 345 51 47 chr1 187093461 187093507 -10101925 + L2a LINE L2 3185 3228 -198 1 2012 5208 61 0 0 chr1 187093507 187094149 -10101283 - L1Md_F2 LINE L1 0 6582 5941 1 2012 359 345 51 47 chr1 187094149 187094336 -10101096 + L2a LINE L2 3229 3419 -7 1 2012 303 278 93 0 chr1 187094561 187094658 -10100774 - B1F2 SINE Alu 0 149 44 1 2012 574 155 207 0 chr1 187094679 187094795 -10100637 - B1_Mur4 SINE Alu -9 141 2 1 2012 209 119 24 0 chr1 187094806 187094848 -10100584 + (TCC)n Simple_repeat Simple_repeat 1 43 0 1 2012 672 250 122 0 chr1 187094848 187095028 -10100404 - B3 SINE B2 -14 202 1 1 2012 540 236 104 25 chr1 187095082 187095278 -10100154 + B3A SINE B2 1 209 -7 1 2012 375 266 73 0 chr1 187095666 187095775 -10099657 - PB1D10 SINE Alu 0 117 1 1 2012 1412 45 40 0 chr1 187095788 187095964 -10099468 - B2_Mm2 SINE B2 -7 188 6 2 2012 238 254 56 14 chr1 187096104 187096176 -10099256 + ID4 SINE ID 4 78 -5 2 2012 426 190 17 8 chr1 187096697 187096814 -10098618 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 2012 4624 184 123 9 chr1 187096814 187097823 -10097609 - Lx9 LINE L1 -11 7633 6510 2 2012 1230 61 0 0 chr1 187098115 187098262 -10097170 + B1_Mus1 SINE Alu 2 148 0 2 2012 1459 67 0 6 chr1 187098342 187098523 -10096909 + B2_Mm2 SINE B2 2 181 -14 2 2012 518 207 272 0 chr1 187099393 187099562 -10095870 - B3 SINE B2 0 216 2 2 2012 351 0 0 0 chr1 187100320 187100359 -10095073 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 2012 2919 135 83 4 chr1 187101361 187101881 -10093551 - RLTR31_Mm LTR ERVK 0 561 1 2 2012 321 172 101 61 chr1 187102749 187102848 -10092584 + B1F SINE Alu 45 147 -2 2 2012 518 129 267 33 chr1 187104157 187104277 -10091155 - B1_Mus1 SINE Alu 0 148 1 2 2012 237 169 79 63 chr1 187104584 187104647 -10090785 - B4A SINE B4 -17 275 212 2 2012 273 324 29 0 chr1 187104639 187104741 -10090691 - B4A SINE B4 -185 107 3 2 2012 244 209 209 88 chr1 187104903 187105005 -10090427 - PB1D10 SINE Alu -41 76 1 2 2012 241 396 78 12 chr1 187105005 187105169 -10090263 - MLT1F2 LTR MaLR -67 493 319 2 2012 227 330 116 54 chr1 187105799 187105911 -10089521 + RSINE1 SINE B4 47 165 0 2 2012 26 0 0 0 chr1 187105911 187105937 -10089495 + AT_rich Low_complexity Low_complexity 1 26 0 2 2012 328 221 131 40 chr1 187106505 187106604 -10088828 + ID_B1 SINE B4 115 222 -2 2 2012 196 232 67 53 chr1 187106818 187106974 -10088458 - L2a LINE L2 -349 3070 2915 2 2012 1233 55 0 0 chr1 187107478 187107624 -10087808 - B1_Mus2 SINE Alu 0 147 2 2 2012 27 49 0 0 chr1 187107950 187107991 -10087441 + AT_rich Low_complexity Low_complexity 1 41 0 2 2012 234 176 0 0 chr1 187110691 187110742 -10084690 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 2012 489 152 170 10 chr1 187111357 187111457 -10083975 - PB1D9 SINE Alu -4 116 1 2 2012 1363 95 0 0 chr1 187112337 187112516 -10082916 + B2_Mm2 SINE B2 3 181 -14 2 2012 294 143 0 0 chr1 187112826 187112875 -10082557 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 2012 1207 86 52 0 chr1 187113804 187113978 -10081454 - B2_Mm2 SINE B2 -11 184 2 2 2012 737 165 274 0 chr1 187113998 187114162 -10081270 - B3 SINE B2 -3 213 5 2 2012 644 192 32 40 chr1 187114873 187114998 -10080434 - B1_Mur1 SINE Alu -8 141 18 2 2012 290 206 0 131 chr1 187114923 187115007 -10080425 - MT2B2 LTR ERVL -337 247 175 2 2012 237 219 206 24 chr1 187115007 187115133 -10080299 - MIRc SINE MIR -114 154 6 2 2012 244 278 69 0 chr1 187115397 187115469 -10079963 + B4A SINE B4 7 83 -209 2 2012 252 274 237 8 chr1 187115665 187115783 -10079649 - RSINE1 SINE B4 -17 148 4 2 2012 188 200 18 0 chr1 187115864 187115919 -10079513 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 2012 377 300 145 50 chr1 187116103 187116323 -10079109 - B4 SINE B4 0 292 49 2 2012 269 178 53 27 chr1 187116366 187116441 -10078991 - ID4 SINE ID -4 79 3 2 2012 912 231 95 20 chr1 187116520 187116772 -10078660 + MTEb LTR MaLR 4 274 -105 2 2012 276 325 0 12 chr1 187116769 187116850 -10078582 + RSINE1 SINE B4 5 84 -81 2 2012 1960 277 182 43 chr1 187116991 187117253 -10078179 + MTE-int LTR MaLR 22 313 -1267 2 2012 1296 146 19 0 chr1 187117253 187117459 -10077973 - B3 SINE B2 -5 211 2 2 2012 1960 277 182 43 chr1 187117459 187118055 -10077377 + MTE-int LTR MaLR 314 999 -581 2 2012 271 159 46 31 chr1 187118078 187118143 -10077289 + MTE-int LTR MaLR 935 1000 -580 2 2012 479 326 16 0 chr1 187118242 187118371 -10077061 + RSINE1 SINE B4 3 133 -32 2 2012 300 27 0 0 chr1 187118385 187118422 -10077010 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 2012 911 131 35 0 chr1 187119174 187119319 -10076113 - B1_Mur4 SINE Alu 0 150 1 2 2012 317 274 29 10 chr1 187121023 187121126 -10074306 - PB1D10 SINE Alu -4 113 9 2 2012 469 243 9 18 chr1 187122690 187122799 -10072633 - PB1D10 SINE Alu -9 108 1 2 2012 28 0 0 0 chr1 187122848 187122876 -10072556 + AT_rich Low_complexity Low_complexity 1 28 0 2 2012 180 200 29 0 chr1 187122910 187122945 -10072487 + MIR3 SINE MIR 152 187 -21 2 2012 1013 167 234 19 chr1 187122957 187123226 -10072206 + ORR1C2 LTR MaLR 1 327 -57 2 2012 1605 52 0 0 chr1 187123234 187123427 -10072005 - B2_Mm1a SINE B2 0 193 1 2 2012 8104 72 11 3 chr1 187123467 187124560 -10070872 - L1_Mus4 LINE L1 -4 6632 5529 2 2012 4607 137 25 8 chr1 187124547 187125311 -10070121 + L1_Mus4 LINE L1 4717 5493 -390 2 2012 366 190 89 0 chr1 187125311 187125390 -10070042 + ORR1C2 LTR MaLR 282 367 0 2 2012 275 254 28 0 chr1 187125454 187125525 -10069907 + RLTR19C LTR ERVK 25 97 -409 2 2012 491 320 31 74 chr1 187125650 187125812 -10069620 + RLTR33 LTR ERVK 444 598 -80 2 2012 395 292 15 15 chr1 187125965 187126097 -10069335 - RSINE1 SINE B4 -31 134 3 2 2012 592 309 26 21 chr1 187126148 187126340 -10069092 + B3A SINE B2 4 196 -2 2 2012 23 0 0 0 chr1 187126365 187126388 -10069044 + AT_rich Low_complexity Low_complexity 1 23 0 2 2012 786 163 0 75 chr1 187126396 187126555 -10068877 + B1_Mm SINE Alu 1 147 0 2 2012 2266 109 92 104 chr1 187127377 187127858 -10067574 + IAPLTR2_Mm LTR ERVK 1 475 0 2 2012 1071 107 31 89 chr1 187127860 187128075 -10067357 + IAPEz-int LTR ERVK 3 250 -7331 2 2012 230 327 0 0 chr1 187128075 187128130 -10067302 + RLTR27 LTR ERVK 221 275 -34 2 2012 285 83 0 0 chr1 187128130 187128166 -10067266 + IAPEz-int LTR ERVK 145 180 -7401 2 2012 234 267 0 0 chr1 187128166 187128211 -10067221 + RLTR27 LTR ERVK 231 275 -34 2 2012 244 327 0 0 chr1 187128237 187128292 -10067140 + RLTR27 LTR ERVK 221 275 -34 2 2012 3596 67 1 16 chr1 187128292 187128870 -10066562 + IAPEz-int LTR ERVK 168 662 -5819 2 2012 2260 72 0 0 chr1 187128870 187129148 -10066284 + IAPEz-int LTR ERVK 1359 1636 -4845 2 2012 5926 58 4 22 chr1 187129147 187129907 -10065525 + IAPEz-int LTR ERVK 5736 6481 0 2 2012 2288 104 92 104 chr1 187129907 187130388 -10065044 + IAPLTR2_Mm LTR ERVK 1 475 0 2 2012 250 350 8 98 chr1 187131127 187131167 -10064265 + MT2B LTR ERVL 130 157 -444 2 2012 534 204 53 9 chr1 187131167 187131281 -10064151 + PB1D9 SINE Alu 2 120 0 2 2012 568 281 99 25 chr1 187131366 187131567 -10063865 - B3 SINE B2 0 216 1 2 2012 547 226 244 23 chr1 187131896 187132068 -10063364 + B3 SINE B2 1 210 -6 2 2012 507 209 13 0 chr1 187132098 187132204 -10063228 + B1_Mur2 SINE Alu 6 114 -6 2 2012 447 184 58 0 chr1 187133876 187133979 -10061453 + B1_Mus1 SINE Alu 40 148 0 2 2012 3583 18 2 0 chr1 187134019 187134414 -10061018 - MTA_Mm LTR MaLR 0 396 1 2 2012 210 170 64 0 chr1 187134562 187134609 -10060823 + (CATA)n Simple_repeat Simple_repeat 4 53 0 2 2012 210 173 0 133 chr1 187134687 187134747 -10060685 + A-rich Low_complexity Low_complexity 1 52 0 2 2012 233 328 16 0 chr1 187135483 187135544 -10059888 - ID4_ SINE ID -20 63 2 2 2012 1126 82 0 7 chr1 187136503 187136650 -10058782 + B1_Mus1 SINE Alu 2 147 -1 2 2012 278 182 28 70 chr1 187137060 187137131 -10058301 + ID4_ SINE ID 2 69 -14 2 2012 252 284 26 51 chr1 187137904 187137982 -10057450 + ID4_ SINE ID 8 83 0 2 2012 1317 97 21 5 chr1 187138369 187138555 -10056877 - B2_Mm2 SINE B2 -6 189 1 2 2012 243 146 0 0 chr1 187139221 187139262 -10056170 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 2012 312 192 194 15 chr1 187139442 187139550 -10055882 + B1F1 SINE Alu 1 129 -20 2 2012 364 253 42 0 chr1 187140174 187140269 -10055163 + B1F SINE Alu 39 137 -12 2 2012 1446 79 11 0 chr1 187140530 187140720 -10054712 - B2_Mm1t SINE B2 0 193 2 2 2012 27 29 0 0 chr1 187140849 187140883 -10054549 + AT_rich Low_complexity Low_complexity 1 34 0 2 2012 198 0 0 0 chr1 187140885 187140907 -10054525 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 2012 270 179 0 0 chr1 187141007 187141063 -10054369 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 2012 424 186 81 0 chr1 187141063 187141149 -10054283 - B3A SINE B2 -105 93 1 2 2012 22 35 0 0 chr1 187141521 187141550 -10053882 + AT_rich Low_complexity Low_complexity 1 29 0 2 2012 228 86 0 0 chr1 187141597 187141632 -10053800 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 2012 420 310 22 74 chr1 187143837 187144067 -10051365 - Tigger1 DNA MER2_type -20 2398 2181 2 2012 510 208 67 37 chr1 187144079 187144214 -10051218 + B3 SINE B2 77 215 -1 2 2012 341 315 45 0 chr1 187144215 187144326 -10051106 - Tigger1 DNA MER2_type -2298 120 5 2 2012 1224 41 7 0 chr1 187144344 187144490 -10050942 + B1_Mus1 SINE Alu 2 148 0 2 2012 609 293 31 89 chr1 187145053 187145278 -10050154 - ID_B1 SINE B4 0 224 13 2 2012 900 171 0 27 chr1 187145983 187146133 -10049299 + B1_Mur1 SINE Alu 3 148 -1 2 2012 954 242 245 18 chr1 187147138 187147472 -10047960 + MTC LTR MaLR 1 410 -11 2 2012 642 245 29 0 chr1 187147757 187147896 -10047536 - B1F SINE Alu 0 149 7 2 2012 288 312 73 86 chr1 187147763 187147914 -10047518 - B4 SINE B4 -72 220 72 2 2012 253 188 43 14 chr1 187148076 187148146 -10047286 - ID4 SINE ID -10 73 2 2 2012 207 0 0 0 chr1 187148220 187148243 -10047189 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 2012 739 154 57 29 chr1 187148264 187148404 -10047028 + B1_Mus1 SINE Alu 5 148 0 2 2012 24 0 0 0 chr1 187148476 187148500 -10046932 + AT_rich Low_complexity Low_complexity 1 24 0 2 2012 278 247 78 102 chr1 187148572 187148739 -10046693 - RSINE1 SINE B4 0 165 3 2 2012 200 174 43 0 chr1 187148934 187148980 -10046452 - MIR SINE MIR -131 77 30 2 2012 253 178 92 40 chr1 187149206 187149282 -10046150 + B1F SINE Alu 10 89 -60 2 2012 718 138 8 68 chr1 187149843 187149975 -10045457 - B1_Mus2 SINE Alu -18 129 6 2 2012 366 245 92 0 chr1 187150344 187150442 -10044990 + B1F SINE Alu 43 149 0 2 2012 236 288 0 15 chr1 187150471 187150538 -10044894 + ID4 SINE ID 2 67 -16 2 2012 898 185 74 39 chr1 187150630 187150833 -10044599 + B3 SINE B2 1 210 -6 3 2012 326 280 0 13 chr1 187151293 187151369 -10044063 + ID4 SINE ID 8 82 -1 3 2012 1461 74 16 0 chr1 187151791 187151981 -10043451 - B2_Mm2 SINE B2 -1 194 2 3 2012 854 219 32 5 chr1 187152479 187152667 -10042765 - B3A SINE B2 -4 194 2 3 2012 25 31 0 0 chr1 187153113 187153145 -10042287 + GC_rich Low_complexity Low_complexity 1 32 0 3 2012 631 157 8 16 chr1 187153456 187153579 -10041853 + B1_Mus1 SINE Alu 1 122 -26 3 2012 241 275 18 165 chr1 187153579 187153618 -10041814 + MT2B LTR ERVL 178 300 -301 3 2012 374 348 44 11 chr1 187153893 187154073 -10041359 - B4A SINE B4 -2 290 105 3 2012 1598 172 182 65 chr1 187154304 187154721 -10040711 - RMER4A LTR ERVK 0 466 1 3 2012 306 0 0 0 chr1 187154888 187154922 -10040510 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 2012 795 186 71 25 chr1 187154926 187155124 -10040308 - B3 SINE B2 -6 210 4 3 2012 1429 65 32 0 chr1 187155230 187155415 -10040017 + B2_Mm2 SINE B2 2 192 -3 3 2012 213 312 47 0 chr1 187155491 187155555 -10039877 + B1F SINE Alu 33 99 -50 3 2012 230 262 0 0 chr1 187155560 187155621 -10039811 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 2012 333 0 0 0 chr1 187157021 187157058 -10038374 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 2012 565 240 95 8 chr1 187157062 187157188 -10038244 - RSINE1 SINE B4 -21 144 8 3 2012 333 225 88 0 chr1 187157305 187157385 -10038047 - PB1D10 SINE Alu -1 116 30 3 2012 258 219 29 59 chr1 187157468 187157536 -10037896 + ID SINE ID 5 70 -154 3 2012 201 195 0 0 chr1 187157536 187157577 -10037855 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 2012 337 304 44 0 chr1 187157633 187157768 -10037664 - B1F SINE Alu -8 141 1 3 2012 208 139 0 0 chr1 187158004 187158040 -10037392 + (TGG)n Simple_repeat Simple_repeat 2 37 0 3 2012 203 146 0 24 chr1 187158040 187158082 -10037350 + CT-rich Low_complexity Low_complexity 3 43 0 3 2012 389 284 43 29 chr1 187158145 187158283 -10037149 - B1F1 SINE Alu 0 149 10 3 2012 688 258 63 152 chr1 187158484 187158878 -10036554 - ORR1E LTR MaLR 0 359 1 3 2012 1121 75 0 7 chr1 187158910 187159057 -10036375 - B1_Mus1 SINE Alu -1 147 2 3 2012 439 162 0 0 chr1 187159244 187159312 -10036120 + B1_Mur4 SINE Alu 1 68 -82 3 2012 722 259 45 22 chr1 187159308 187159486 -10035946 - B3A SINE B2 -16 182 1 3 2012 225 363 119 12 chr1 187159584 187159777 -10035655 - MIR SINE MIR -45 223 8 3 2012 1011 85 43 0 chr1 187159912 187160053 -10035379 - B1_Mus2 SINE Alu 0 147 1 3 2012 930 135 14 0 chr1 187161011 187161152 -10034280 + B1_Mur4 SINE Alu 1 143 -7 3 2012 527 74 21 21 chr1 187161155 187161251 -10034181 + (GGAGA)n Simple_repeat Simple_repeat 1 96 0 3 2012 227 277 0 0 chr1 187161315 187161362 -10034070 + B4A SINE B4 85 131 -161 3 2012 506 183 32 0 chr1 187161411 187161504 -10033928 + B1_Mur1 SINE Alu 30 125 -24 3 2012 290 292 38 98 chr1 187162349 187162482 -10032950 + MT2B LTR ERVL 133 257 -344 3 2012 669 189 0 0 chr1 187162408 187162514 -10032918 + ID_B1 SINE B4 109 214 -10 3 2012 5786 193 72 22 chr1 187162555 187162748 -10032684 - RLTR21 LTR ERVK -117 1455 1290 3 2012 249 33 0 0 chr1 187162748 187162778 -10032654 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 2012 5786 193 95 50 chr1 187162778 187163519 -10031913 - RLTR21 LTR ERVK -283 1289 502 3 2012 183 42 0 0 chr1 187163519 187163543 -10031889 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 2012 5786 193 95 50 chr1 187163543 187164049 -10031383 - RLTR21 LTR ERVK -1071 501 2 3 2012 537 280 20 20 chr1 187164177 187164323 -10031109 - B1F2 SINE Alu -1 148 3 3 2012 819 101 0 0 chr1 187164516 187164635 -10030797 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 2012 285 29 0 0 chr1 187164776 187164810 -10030622 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 2012 1219 21 7 0 chr1 187164810 187164947 -10030485 - B1_Mus2 SINE Alu -7 140 3 3 2012 220 313 0 15 chr1 187165462 187165530 -10029902 + ID4 SINE ID 8 74 -9 3 2012 1882 281 127 50 chr1 187165819 187166773 -10028659 - Lx8 LINE L1 -187 7286 6260 3 2012 856 216 97 38 chr1 187166935 187167254 -10028178 - L1_Mur3 LINE L1 -705 5654 5260 3 2012 476 196 130 26 chr1 187167261 187167376 -10028056 - B1_Mur4 SINE Alu -6 144 18 3 2012 881 183 30 5 chr1 187167426 187167624 -10027808 - B3 SINE B2 -13 203 1 3 2012 959 287 97 18 chr1 187167625 187167993 -10027439 - L1_Mur3 LINE L1 -1155 4988 4435 3 2012 861 164 7 0 chr1 187167993 187168133 -10027299 - B1_Mur1 SINE Alu -6 143 3 3 2012 959 276 97 38 chr1 187168133 187168503 -10026929 - L1_Mur3 LINE L1 -1391 4456 4033 3 2012 366 158 98 0 chr1 187168507 187168589 -10026843 - PB1D10 SINE Alu -3 114 25 3 2012 198 71 0 0 chr1 187168613 187168641 -10026791 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 3 2012 262 250 28 0 chr1 187168671 187168743 -10026689 - ID4 SINE ID -9 74 1 3 2012 411 207 99 0 chr1 187169630 187169741 -10025691 + B3A SINE B2 2 123 -75 3 2012 789 199 13 20 chr1 187169991 187170140 -10025292 + B1_Mur2 SINE Alu 2 149 0 3 2012 192 152 0 0 chr1 187170140 187170173 -10025259 + GA-rich Low_complexity Low_complexity 3 35 0 3 2013 444 291 65 29 chr1 187170948 187171086 -10024346 + B1F SINE Alu 7 149 0 3 2013 186 43 0 0 chr1 187171127 187171150 -10024282 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 2013 1170 70 0 0 chr1 187171153 187171295 -10024137 - B1_Mus1 SINE Alu -6 142 1 3 2013 358 182 117 0 chr1 187171351 187171428 -10024004 + B1F SINE Alu 33 118 -31 3 2013 207 0 0 0 chr1 187171571 187171594 -10023838 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 2013 261 0 0 0 chr1 187171752 187171781 -10023651 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 2013 741 173 22 0 chr1 187172356 187172495 -10022937 + B1_Mus2 SINE Alu 6 147 0 3 2013 233 193 70 0 chr1 187174229 187174286 -10021146 - B1_Mus1 SINE Alu -64 84 24 3 2013 405 221 123 19 chr1 187174801 187174907 -10020525 + PB1 SINE Alu 7 123 -4 3 2013 782 185 237 0 chr1 187174935 187175108 -10020324 + B3 SINE B2 2 215 -1 3 2013 260 157 20 0 chr1 187175142 187175193 -10020239 + B1_Mur1 SINE Alu 98 149 0 3 2013 308 206 80 46 chr1 187175252 187175367 -10020065 + MIR SINE MIR 120 231 -31 3 2013 361 226 128 0 chr1 187176336 187176438 -10018994 + PB1 SINE Alu 5 119 -8 3 2013 526 272 15 7 chr1 187177236 187177373 -10018059 + ID_B1 SINE B4 82 219 -5 3 2013 224 146 61 20 chr1 187177329 187177378 -10018054 + PB1D7 SINE Alu 70 120 0 3 2013 757 234 51 0 chr1 187178005 187178180 -10017252 - B3 SINE B2 -1 215 32 3 2013 688 83 218 0 chr1 187178263 187178396 -10017036 - B2_Mm1t SINE B2 -5 188 27 3 2013 198 91 0 0 chr1 187178396 187178429 -10017003 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 2013 1294 14 0 0 chr1 187178430 187178576 -10016856 - B1_Mm SINE Alu -1 146 1 3 2013 293 49 0 0 chr1 187178576 187178617 -10016815 - B2_Mm2 SINE B2 -153 42 2 3 2013 293 235 29 0 chr1 187178651 187178719 -10016713 - B1F1 SINE Alu -1 148 79 3 2013 373 295 121 16 chr1 187178715 187178839 -10016593 + B3A SINE B2 15 151 -47 3 2013 214 184 0 0 chr1 187178865 187178903 -10016529 + GA-rich Low_complexity Low_complexity 1 38 0 3 2013 1776 183 72 13 chr1 187178999 187179387 -10016045 + MTC LTR MaLR 11 421 0 3 2013 981 228 10 5 chr1 187179461 187179668 -10015764 + B3 SINE B2 3 210 -6 3 2013 896 116 0 0 chr1 187179756 187179894 -10015538 - B1_Mus1 SINE Alu 0 148 11 3 2013 26 0 0 0 chr1 187179901 187179927 -10015505 + AT_rich Low_complexity Low_complexity 1 26 0 3 2013 276 355 38 70 chr1 187179955 187180140 -10015292 + ID_B1 SINE B4 16 194 -30 3 2013 282 315 83 0 chr1 187180043 187180151 -10015281 + B1F2 SINE Alu 11 127 -22 3 2013 279 275 36 2 chr1 187180724 187180815 -10014617 + AluF_3 SINE Alu 137 209 -102 3 2013 182 172 0 0 chr1 187180862 187180891 -10014541 - L4 LINE RTE -1282 747 719 3 2013 214 191 0 0 chr1 187180891 187180933 -10014499 + T-rich Low_complexity Low_complexity 1 42 0 3 2013 229 100 0 39 chr1 187180939 187180991 -10014441 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 3 2013 1182 48 0 26 chr1 187180991 187181142 -10014290 - B1_Mus1 SINE Alu 0 148 2 3 2013 974 136 0 0 chr1 187181147 187181294 -10014138 - B1_Mus2 SINE Alu 0 147 1 3 2013 231 307 86 17 chr1 187181778 187181894 -10013538 + MTE2a LTR MaLR 122 245 -134 3 2013 893 255 77 61 chr1 187182036 187182399 -10013033 - Lx8 LINE L1 -43 7430 7062 3 2013 295 273 20 20 chr1 187182472 187182492 -10012940 - BC1_Mm scRNA scRNA -51 101 1 3 2013 313 284 25 0 chr1 187182492 187182573 -10012859 - ID SINE ID -141 83 1 3 2013 327 49 0 0 chr1 187182746 187182787 -10012645 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 3 2013 1369 94 16 5 chr1 187182809 187183002 -10012430 + B2_Mm2 SINE B2 1 195 0 3 2013 722 203 48 105 chr1 187183119 187183328 -10012104 + B3A SINE B2 1 197 -1 3 2013 363 325 0 25 chr1 187183800 187183920 -10011512 + PB1D10 SINE Alu 1 117 0 3 2013 596 239 39 20 chr1 187184163 187184338 -10011094 + B3A SINE B2 1 185 -10 3 2013 300 235 29 29 chr1 187184526 187184596 -10010836 - B3 SINE B2 -34 182 113 3 2013 1800 192 81 8 chr1 187184597 187184980 -10010452 + MTD LTR MaLR 9 419 0 3 2013 536 235 9 0 chr1 187184980 187185095 -10010337 - B3 SINE B2 -100 116 1 3 2013 396 0 0 0 chr1 187185243 187185287 -10010145 + (T)n Simple_repeat Simple_repeat 1 44 0 4 2013 230 59 0 0 chr1 187186226 187186260 -10009172 - B1_Mur4 SINE Alu -2 148 115 4 2013 301 302 134 34 chr1 187188954 187189252 -10006180 - L1MC4 LINE L1 -370 7672 7345 4 2013 698 178 248 4 chr1 187189338 187189599 -10005833 - Lx5 LINE L1 0 7050 6726 4 2013 357 273 132 14 chr1 187189961 187190180 -10005252 - L1ME1 LINE L1 -179 6000 5756 4 2013 484 191 8 34 chr1 187190252 187190371 -10005061 - MLT1A1 LTR MaLR 0 408 293 4 2013 322 240 99 10 chr1 187190489 187190590 -10004842 - PB1D10 SINE Alu -7 110 1 4 2013 339 96 0 0 chr1 187191619 187191671 -10003761 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 2013 326 248 5 0 chr1 187191674 187191742 -10003690 - PB1D10 SINE Alu -56 61 1 4 2013 225 0 0 0 chr1 187191849 187191874 -10003558 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 4 2013 292 286 31 0 chr1 187192099 187192197 -10003235 - PB1D7 SINE Alu -11 109 9 4 2013 561 68 0 0 chr1 187192534 187192608 -10002824 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 4 2013 417 214 0 12 chr1 187192615 187192700 -10002732 - PB1 SINE Alu -17 110 27 4 2013 35 41 0 0 chr1 187192759 187192808 -10002624 + AT_rich Low_complexity Low_complexity 1 49 0 4 2013 480 229 38 0 chr1 187192870 187192975 -10002457 + PB1D10 SINE Alu 9 117 0 4 2013 402 286 26 45 chr1 187192977 187193131 -10002301 + RSINE1 SINE B4 5 155 -10 4 2013 23 0 0 0 chr1 187193138 187193161 -10002271 + AT_rich Low_complexity Low_complexity 1 23 0 4 2013 213 267 139 65 chr1 187194255 187194363 -10001069 - PB1D10 SINE Alu 0 117 2 4 2013 292 261 0 0 chr1 187195008 187195073 -10000359 - PB1 SINE Alu -37 90 26 4 2013 222 37 0 0 chr1 187195095 187195122 -10000310 + (T)n Simple_repeat Simple_repeat 1 27 0 4 2013 1603 37 0 16 chr1 187195128 187195319 -10000113 - B2_Mm1a SINE B2 -4 189 2 4 2013 393 253 86 13 chr1 187196976 187197128 -9998304 - RSINE1 SINE B4 -2 163 1 4 2013 221 236 0 0 chr1 187197136 187197191 -9998241 + (TTG)n Simple_repeat Simple_repeat 1 55 0 4 2013 401 232 111 0 chr1 187198900 187198999 -9996433 - ID_B1 SINE B4 -11 213 104 4 2013 714 207 93 0 chr1 187199106 187199256 -9996176 + B3 SINE B2 40 203 -13 4 2013 459 141 0 0 chr1 187199349 187199420 -9996012 - B3A SINE B2 -119 79 9 4 2013 29 47 0 0 chr1 187199653 187199696 -9995736 + AT_rich Low_complexity Low_complexity 1 43 0 4 2013 477 298 30 65 chr1 187200007 187200237 -9995195 - ID_B1 SINE B4 -2 222 1 4 2013 418 282 18 0 chr1 187200240 187200350 -9995082 - B1F1 SINE Alu -26 123 12 4 2013 404 245 59 0 chr1 187200948 187201050 -9994382 - RSINE1 SINE B4 -57 108 1 4 2013 1130 200 5 9 chr1 187201164 187201376 -9994056 - B3 SINE B2 0 216 6 4 2013 208 320 13 13 chr1 187202099 187202175 -9993257 - MIR3 SINE MIR -26 182 107 4 2013 189 0 0 0 chr1 187202286 187202307 -9993125 + (CAG)n Simple_repeat Simple_repeat 1 21 0 4 2013 386 241 44 18 chr1 187203727 187203841 -9991591 - PB1D10 SINE Alu 0 117 1 4 2013 310 311 25 62 chr1 187203841 187203908 -9991524 - ID SINE ID -142 82 22 4 2013 234 284 215 21 chr1 187204344 187204488 -9990944 - ORR1D2 LTR MaLR -189 181 10 4 2013 663 168 14 51 chr1 187204673 187204811 -9990621 - B1_Mur4 SINE Alu -7 143 11 4 2013 1265 112 16 0 chr1 187206078 187206265 -9989167 + B2_Mm2 SINE B2 1 190 -5 4 2013 1621 32 0 0 chr1 187207063 187207249 -9988183 - B2_Mm1a SINE B2 -6 187 2 4 2013 306 162 54 0 chr1 187207323 187207397 -9988035 - B2_Mm2 SINE B2 0 195 118 4 2013 231 36 0 0 chr1 187207668 187207696 -9987736 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 4 2013 519 285 65 7 chr1 187207775 187207913 -9987519 - RSINE1 SINE B4 -18 147 2 4 2013 617 219 56 35 chr1 187208104 187208246 -9987186 + B1F1 SINE Alu 5 149 0 4 2013 436 228 190 22 chr1 187208251 187208435 -9986997 + B3 SINE B2 1 215 -1 4 2013 182 65 65 0 chr1 187208648 187208679 -9986753 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 2013 509 203 104 8 chr1 187209744 187209878 -9985554 - B1_Mur1 SINE Alu -1 148 2 4 2013 574 271 7 7 chr1 187209891 187210036 -9985396 - ID_B1 SINE B4 0 224 80 4 2013 388 270 0 12 chr1 187210334 187210449 -9984983 - PB1D7 SINE Alu -1 119 6 4 2013 5411 181 60 41 chr1 187211948 187212343 -9983089 - Lx5 LINE L1 0 7050 6641 4 2013 387 0 0 0 chr1 187212343 187212386 -9983046 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 4 2013 5411 181 60 41 chr1 187212386 187213093 -9982339 - Lx5 LINE L1 -410 6640 5920 4 2013 3160 56 13 3 chr1 187213093 187213485 -9981947 - MTA_Mm LTR MaLR 0 396 1 4 2013 5411 181 60 41 chr1 187213485 187213515 -9981917 - Lx5 LINE L1 -1131 5919 5895 4 2013 1424 48 0 5 chr1 187213515 187213704 -9981728 - B2_Mm2 SINE B2 -1 194 7 4 2013 789 104 61 8 chr1 187213704 187213842 -9981590 - Lx4B LINE L1 -1153 5905 5754 4 2013 257 0 0 197 chr1 187214600 187214666 -9980766 + T-rich Low_complexity Low_complexity 1 53 0 4 2013 1628 32 16 0 chr1 187214674 187214863 -9980569 - B2_Mm1t SINE B2 0 193 2 4 2013 271 322 44 11 chr1 187214919 187215010 -9980422 - PB1 SINE Alu 0 127 34 4 2013 309 257 19 65 chr1 187215267 187215375 -9980057 - PB1D9 SINE Alu 0 120 18 4 2013 682 303 82 0 chr1 187215830 187216025 -9979407 - B3 SINE B2 -5 211 1 4 2013 440 167 0 22 chr1 187216471 187216563 -9978869 + CT-rich Low_complexity Low_complexity 1 90 0 4 2013 196 258 32 21 chr1 187216563 187216658 -9978774 + C-rich Low_complexity Low_complexity 1 96 0 4 2013 335 315 9 18 chr1 187216667 187216777 -9978655 - PB1 SINE Alu -18 109 1 4 2013 577 255 28 0 chr1 187216969 187217114 -9978318 - B1_Mur2 SINE Alu 0 149 1 4 2013 248 246 16 0 chr1 187217234 187217295 -9978137 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 2013 220 260 54 14 chr1 187217518 187217592 -9977840 - L2b LINE L2 0 3375 3299 4 2013 2150 210 103 17 chr1 187218414 187218937 -9976495 - Lx9 LINE L1 -682 6962 6395 4 2013 1152 58 0 0 chr1 187219055 187219192 -9976240 - B1_Mus1 SINE Alu -9 139 3 4 2013 398 227 16 70 chr1 187219195 187219323 -9976109 - Lx9 LINE L1 -1638 6006 5886 4 2013 554 280 0 15 chr1 187220211 187220345 -9975087 - B3 SINE B2 -3 213 82 4 2013 615 170 19 0 chr1 187221274 187221380 -9974052 + PB1D10 SINE Alu 3 110 -7 4 2013 1170 75 0 0 chr1 187221467 187221614 -9973818 + B1_Mus1 SINE Alu 1 147 -1 4 2013 189 0 0 0 chr1 187221617 187221638 -9973794 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 4 2013 217 328 130 32 chr1 187221639 187221762 -9973670 - MIRm SINE MIR -99 169 34 4 2013 279 295 32 0 chr1 187221863 187221958 -9973474 + ID_B1 SINE B4 79 176 -48 4 2013 367 196 53 21 chr1 187221885 187221979 -9973453 + PB1D10 SINE Alu 21 117 0 4 2013 481 289 13 0 chr1 187222005 187222154 -9973278 - B4 SINE B4 -140 152 2 4 2013 255 179 0 0 chr1 187223329 187223396 -9972036 + T-rich Low_complexity Low_complexity 1 67 0 4 2013 1405 39 56 11 chr1 187223447 187223627 -9971805 - B2_Mm2 SINE B2 -6 189 2 4 2013 192 40 0 0 chr1 187223633 187223658 -9971774 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4 2013 1578 28 0 0 chr1 187223658 187223836 -9971596 - B2_Mm1a SINE B2 -15 178 1 4 2013 212 171 24 0 chr1 187223946 187223987 -9971445 + CT-rich Low_complexity Low_complexity 2 43 0 4 2013 270 317 37 0 chr1 187224594 187224676 -9970756 - Tigger9a DNA Tigger -260 472 388 4 2013 180 0 0 0 chr1 187224696 187224716 -9970716 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 2013 419 317 73 18 chr1 187225662 187225826 -9969606 + B3A SINE B2 1 173 -25 4 2013 536 108 0 19 chr1 187225831 187225935 -9969497 + (CATA)n Simple_repeat Simple_repeat 1 102 0 4 2013 662 255 14 0 chr1 187226160 187226305 -9969127 - B1_Mur2 SINE Alu 0 149 3 4 2013 330 26 0 0 chr1 187226366 187226405 -9969027 + (TCTCCC)n Simple_repeat Simple_repeat 4 42 0 4 2013 800 292 54 30 chr1 187226576 187226946 -9968486 - MTEa LTR MaLR 0 379 1 4 2013 25 0 0 0 chr1 187227406 187227431 -9968001 + AT_rich Low_complexity Low_complexity 1 25 0 4 2013 235 276 161 17 chr1 187228548 187228666 -9966766 - B4A SINE B4 -7 285 151 4 2013 1204 55 0 0 chr1 187229301 187229447 -9965985 - B1_Mus2 SINE Alu 0 147 2 4 2013 215 287 23 11 chr1 187229479 187229567 -9965865 + CT-rich Low_complexity Low_complexity 4 92 0 4 2013 332 279 20 12 chr1 187229703 187229818 -9965614 - PB1D10 SINE Alu -5 112 1 4 2013 386 262 175 43 chr1 187230333 187230544 -9964888 - MER2 DNA MER2_type -16 329 91 4 2013 1415 214 32 23 chr1 187231879 187232224 -9963208 - ORR1D1 LTR MaLR 0 374 27 4 2013 266 276 71 10 chr1 187232767 187232866 -9962566 - PB1D10 SINE Alu -12 105 1 4 2013 180 0 0 0 chr1 187233016 187233036 -9962396 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 2013 279 338 23 23 chr1 187233427 187233560 -9961872 + B1_Mur3 SINE Alu 16 148 -1 4 2013 232 289 68 26 chr1 187233686 187233803 -9961629 + MLT1B LTR MaLR 1 122 -268 4 2013 648 260 97 75 chr1 187234266 187234545 -9960887 - B4 SINE B4 0 292 8 4 2013 381 248 45 9 chr1 187234575 187234685 -9960747 + PB1D10 SINE Alu 4 117 0 4 2013 362 145 16 0 chr1 187234841 187234903 -9960529 + B1_Mus2 SINE Alu 79 141 -6 4 2013 243 61 0 0 chr1 187234904 187234937 -9960495 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 2013 279 133 0 0 chr1 187235331 187235376 -9960056 + (T)n Simple_repeat Simple_repeat 1 45 0 5 2013 458 235 109 0 chr1 187236228 187236347 -9959085 - B1_Mur1 SINE Alu -8 141 10 5 2013 555 140 152 34 chr1 187237559 187237677 -9957755 + B1_Mur3 SINE Alu 2 133 -16 5 2013 1219 41 0 13 chr1 187237757 187237906 -9957526 + B1_Mus2 SINE Alu 1 147 0 5 2013 482 256 79 32 chr1 187238567 187238757 -9956675 + L1MA6 LINE L1 5803 6001 -299 5 2013 252 0 0 0 chr1 187239003 187239031 -9956401 + (T)n Simple_repeat Simple_repeat 1 28 0 5 2013 526 294 86 15 chr1 187239143 187239340 -9956092 + ID_B1 SINE B4 5 215 -9 5 2013 828 173 240 11 chr1 187240042 187240217 -9955215 - B3 SINE B2 0 216 2 5 2013 438 274 23 30 chr1 187240491 187240623 -9954809 + B3A SINE B2 1 131 -67 5 2013 523 189 110 39 chr1 187240631 187240758 -9954674 + B1F2 SINE Alu 3 138 -11 5 2013 1103 28 0 0 chr1 187240859 187241001 -9954431 - B1_Mus2 SINE Alu 0 147 6 5 2013 391 193 8 99 chr1 187240894 187241015 -9954417 - MT2B LTR ERVL -337 264 155 5 2013 686 261 50 5 chr1 187241744 187241944 -9953488 - B3 SINE B2 -7 209 1 5 2013 201 94 0 0 chr1 187243352 187243384 -9952048 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 2013 474 33 0 0 chr1 187243384 187243443 -9951989 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 5 2013 530 203 0 48 chr1 187244554 187244678 -9950754 + B3A SINE B2 3 120 -78 5 2013 198 0 0 0 chr1 187244715 187244737 -9950695 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 2013 458 246 79 0 chr1 187244758 187244872 -9950560 + B3A SINE B2 12 134 -64 5 2013 655 186 0 26 chr1 187245192 187245308 -9950124 - PB1D9 SINE Alu -6 114 2 5 2013 1262 41 0 0 chr1 187245452 187245598 -9949834 - B1_Mus2 SINE Alu 0 147 2 5 2013 202 214 0 0 chr1 187245909 187245951 -9949481 + T-rich Low_complexity Low_complexity 4 45 0 5 2013 303 319 35 28 chr1 187246071 187246216 -9949216 - B4 SINE B4 -3 289 144 5 2013 234 211 206 21 chr1 187246352 187246363 -9949069 - B1F1 SINE Alu -2 147 139 5 2013 189 0 0 0 chr1 187246363 187246384 -9949048 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 2013 257 186 90 9 chr1 187246384 187246469 -9948963 - PB1D10 SINE Alu -11 138 33 5 2013 322 224 151 12 chr1 187247669 187247755 -9947677 + PB1D10 SINE Alu 1 98 -19 5 2013 289 265 0 68 chr1 187248990 187249063 -9946369 - ID4_ SINE ID -14 69 2 5 2013 436 280 42 7 chr1 187249068 187249212 -9946220 - B1F SINE Alu 0 149 1 5 2013 565 65 0 0 chr1 187250067 187250144 -9945288 - B1_Mus2 SINE Alu -70 77 1 5 2013 1499 47 15 25 chr1 187250209 187250405 -9945027 + B2_Mm2 SINE B2 2 195 0 5 2013 383 309 46 7 chr1 187250623 187250776 -9944656 - RSINE1 SINE B4 -4 161 3 5 2013 227 217 55 55 chr1 187250965 187251038 -9944394 - ID4_ SINE ID -4 79 7 5 2013 276 226 30 61 chr1 187251054 187251153 -9944279 - PB1D10 SINE Alu 0 117 22 5 2013 344 258 65 0 chr1 187253620 187253713 -9941719 + B1F1 SINE Alu 2 100 -49 5 2013 189 0 0 0 chr1 187254006 187254027 -9941405 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 2013 1064 74 0 0 chr1 187254027 187254162 -9941270 - B1_Mus1 SINE Alu -13 135 1 5 2013 289 292 85 0 chr1 187254638 187254744 -9940688 + RSINE1 SINE B4 34 148 -17 5 2013 1773 136 112 39 chr1 187255031 187255415 -9940017 - RMER10A LTR ERVL -21 421 10 5 2013 405 0 0 0 chr1 187256930 187256975 -9938457 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 2013 32 0 0 0 chr1 187258159 187258191 -9937241 + AT_rich Low_complexity Low_complexity 1 32 0 5 2013 241 262 33 0 chr1 187258300 187258361 -9937071 - PB1D10 SINE Alu -1 116 54 5 2013 370 262 65 9 chr1 187258753 187258861 -9936571 + B1F SINE Alu 10 123 -26 5 2013 756 107 0 0 chr1 187259224 187259336 -9936096 + (GAAA)n Simple_repeat Simple_repeat 1 112 0 5 2013 576 191 13 13 chr1 187259344 187259498 -9935934 + GA-rich Low_complexity Low_complexity 1 154 0 5 2013 239 200 40 0 chr1 187259756 187259806 -9935626 + CT-rich Low_complexity Low_complexity 2 53 0 5 2013 229 250 91 30 chr1 187259808 187259907 -9935525 - PB1D7 SINE Alu -9 111 7 5 2013 451 217 22 0 chr1 187260195 187260287 -9935145 + PB1D10 SINE Alu 1 94 -23 5 2013 198 150 0 0 chr1 187261214 187261254 -9934178 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 2013 431 82 0 14 chr1 187261544 187261618 -9933814 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 2013 240 206 378 30 chr1 187261674 187261809 -9933623 + Lx8 LINE L1 7290 7471 -2 5 2013 420 20 0 0 chr1 187262010 187262059 -9933373 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 2013 341 327 101 19 chr1 187262216 187262425 -9933007 - L1MDa LINE L1 -4070 2563 2338 5 2013 661 283 58 69 chr1 187262573 187262721 -9932711 - L1MDa LINE L1 -5204 1429 1297 5 2013 872 217 88 25 chr1 187262721 187262995 -9932437 - B4 SINE B4 0 292 2 5 2013 661 283 58 69 chr1 187262995 187263225 -9932207 - L1MDa LINE L1 -5337 1296 1055 5 2013 237 174 0 0 chr1 187263422 187263468 -9931964 - Lx4B LINE L1 -3 7055 7010 5 2013 387 272 39 0 chr1 187263676 187263779 -9931653 - PB1D10 SINE Alu -1 116 10 5 2013 291 312 43 11 chr1 187263701 187263795 -9931637 - ID_B1 SINE B4 -52 172 76 5 2013 826 244 28 37 chr1 187263935 187264152 -9931280 - B3 SINE B2 0 216 2 5 2013 183 80 0 0 chr1 187264196 187264221 -9931211 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 5 2013 280 132 189 0 chr1 187264221 187264274 -9931158 + B1_Mur2 SINE Alu 81 143 -6 5 2013 1008 203 55 0 chr1 187264718 187264920 -9930512 - B3 SINE B2 -3 213 1 5 2013 180 0 0 0 chr1 187264951 187264971 -9930461 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 2013 372 213 164 73 chr1 187265187 187265364 -9930068 + B4A SINE B4 35 227 -65 5 2013 228 67 0 0 chr1 187265403 187265433 -9929999 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 5 2013 456 19 0 0 chr1 187265435 187265488 -9929944 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 2013 404 346 103 50 chr1 187266179 187266520 -9928912 - MLT1G LTR MaLR -70 521 163 5 2013 1643 146 38 7 chr1 187266966 187267256 -9928176 - ORR1B1 LTR MaLR 0 394 96 5 2013 2535 70 3 44 chr1 187267257 187267618 -9927814 - L1Md_F2 LINE L1 0 6582 6237 5 2013 1202 72 0 0 chr1 187267618 187267770 -9927662 + L1Md_F2 LINE L1 6012 6163 -419 5 2013 301 140 0 34 chr1 187267770 187267829 -9927603 - ORR1B1 LTR MaLR -272 57 1 5 2013 216 0 0 0 chr1 187268135 187268159 -9927273 + (ATGGTG)n Simple_repeat Simple_repeat 3 26 0 5 2013 421 363 28 5 chr1 187268776 187268992 -9926440 - MLT1J LTR MaLR -197 315 95 5 2013 282 279 0 29 chr1 187269182 187269252 -9926180 - ID4 SINE ID -11 72 5 5 2013 1661 42 0 0 chr1 187269273 187269466 -9925966 - B2_Mm1a SINE B2 0 193 1 5 2013 315 325 86 69 chr1 187271057 187271232 -9924200 - B3A SINE B2 -17 181 4 5 2013 180 152 0 0 chr1 187271252 187271285 -9924147 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 2013 311 216 0 51 chr1 187271298 187271376 -9924056 - ID4_ SINE ID -8 75 2 5 2013 357 333 22 7 chr1 187271828 187271967 -9923465 - B1F2 SINE Alu -7 142 2 5 2013 385 314 29 0 chr1 187272454 187272594 -9922838 - MTEb LTR MaLR -2 377 234 5 2013 314 216 273 28 chr1 187272750 187272893 -9922539 - MTEb LTR MaLR -189 190 13 5 2013 396 0 0 0 chr1 187273273 187273317 -9922115 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 2013 278 287 0 164 chr1 187273320 187273466 -9921966 - RSINE1 SINE B4 -43 122 1 5 2013 270 366 79 18 chr1 187273742 187273906 -9921526 - MIRb SINE MIR -64 204 31 5 2013 189 0 0 0 chr1 187273939 187273960 -9921472 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 2013 500 164 11 33 chr1 187274003 187274186 -9921246 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 2013 737 186 30 49 chr1 187274192 187274356 -9921076 - RSINE1 SINE B4 0 165 5 5 2013 383 180 43 33 chr1 187274496 187274588 -9920844 + PB1D10 SINE Alu 24 116 -1 5 2013 477 290 92 10 chr1 187275016 187275211 -9920221 + B4A SINE B4 1 211 -81 5 2013 398 20 20 0 chr1 187275321 187275372 -9920060 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 2013 249 264 153 0 chr1 187275698 187275770 -9919662 - ID4_ SINE ID 0 83 1 5 2013 327 228 25 25 chr1 187275935 187276016 -9919416 - MIR SINE MIR -4 258 178 5 2013 33 0 0 0 chr1 187276118 187276151 -9919281 + AT_rich Low_complexity Low_complexity 1 33 0 5 2013 291 54 0 0 chr1 187276194 187276231 -9919201 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 2013 483 320 32 0 chr1 187276530 187276686 -9918746 + RSINE1 SINE B4 3 163 -2 5 2013 345 24 0 0 chr1 187276703 187276745 -9918687 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 2013 416 77 62 0 chr1 187277228 187277293 -9918139 - ORR1A3 LTR MaLR 0 326 258 5 2013 2101 143 59 21 chr1 187277285 187277544 -9917888 - ORR1A3-int LTR MaLR -844 1119 683 5 2013 596 204 37 62 chr1 187277544 187277706 -9917726 - MT2B LTR ERVL -327 274 117 5 2013 1356 112 46 5 chr1 187277690 187277906 -9917526 - ORR1A3-int LTR MaLR -1738 225 1 5 2013 229 371 7 35 chr1 187279697 187279842 -9915590 + CT-rich Low_complexity Low_complexity 4 144 0 5 2013 243 316 68 48 chr1 187281414 187281449 -9913983 - ID_B1 SINE B4 -114 110 73 5 2013 279 0 0 0 chr1 187281449 187281480 -9913952 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 2013 271 254 32 0 chr1 187281483 187281546 -9913886 - tRNA-Ala-GCY_ tRNA tRNA -10 65 1 5 2013 561 277 0 0 chr1 187281581 187281711 -9913721 - B1F1 SINE Alu -5 144 15 5 2013 306 301 0 19 chr1 187282021 187282126 -9913306 - HAL1-3A_ME LINE L1 -778 2080 1978 5 2013 1074 165 0 2 chr1 187282129 187282601 -9912831 + (TG)n Simple_repeat Simple_repeat 1 470 0 5 2013 307 303 40 0 chr1 187282628 187282727 -9912705 - PB1D7 SINE Alu -15 105 3 6 2013 233 151 0 19 chr1 187282867 187282921 -9912511 + CT-rich Low_complexity Low_complexity 3 55 0 6 2013 324 175 0 0 chr1 187283161 187283224 -9912208 + CT-rich Low_complexity Low_complexity 2 64 0 6 2013 218 265 100 20 chr1 187283444 187283544 -9911888 - MIR3 SINE MIR -15 193 86 6 2013 719 96 125 23 chr1 187283699 187283827 -9911605 + MTD LTR MaLR 1 141 -278 6 2013 251 256 194 0 chr1 187283977 187284067 -9911365 - B1F SINE Alu -14 103 1 6 2013 473 228 10 0 chr1 187284421 187284437 -9910995 - B1_Mur3 SINE Alu -41 108 92 6 2013 225 65 0 0 chr1 187284437 187284468 -9910964 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6 2013 531 167 0 0 chr1 187284468 187284552 -9910880 - PB1D9 SINE Alu -30 90 7 6 2013 445 274 40 0 chr1 187284794 187284918 -9910514 - B1F1 SINE Alu -18 131 3 6 2013 423 281 7 104 chr1 187284959 187285094 -9910338 - RSINE1 SINE B4 -33 132 11 6 2013 487 297 17 5 chr1 187285191 187285369 -9910063 - HAL1-2a_MD LINE L1 -516 2508 2344 6 2013 28 71 0 0 chr1 187286008 187286064 -9909368 + AT_rich Low_complexity Low_complexity 1 56 0 6 2013 471 35 0 0 chr1 187286081 187286138 -9909294 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 2013 335 271 87 70 chr1 187286146 187286261 -9909171 - RSINE1 SINE B4 -28 137 21 6 2013 393 249 183 16 chr1 187286293 187286422 -9909010 - PB1D10 SINE Alu 0 149 1 6 2013 237 257 29 0 chr1 187287441 187287511 -9907921 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 6 2013 558 41 0 0 chr1 187287512 187287585 -9907847 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 2013 296 236 14 0 chr1 187287585 187287657 -9907775 - B1F1 SINE Alu -12 137 65 6 2013 270 286 13 25 chr1 187288738 187288817 -9906615 - ID4 SINE ID -3 80 3 6 2013 556 245 0 0 chr1 187289917 187290023 -9905409 + PB1 SINE Alu 5 110 -17 6 2013 213 215 48 34 chr1 187290959 187291029 -9904403 - BC1_Mm scRNA scRNA -7 76 1 6 2013 378 0 0 0 chr1 187291295 187291337 -9904095 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 2013 414 331 145 0 chr1 187291376 187291542 -9903890 - MER20 DNA MER1_type -1 218 29 6 2013 256 282 0 0 chr1 187291678 187291749 -9903683 - PB1D10 SINE Alu -40 77 7 6 2013 324 0 0 0 chr1 187292899 187292935 -9902497 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 2013 336 24 0 0 chr1 187292935 187292975 -9902457 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 2013 704 261 54 5 chr1 187293168 187293372 -9902060 + B3 SINE B2 2 215 -1 6 2013 377 267 66 16 chr1 187294457 187294579 -9900853 - B1_Mur4 SINE Alu -1 149 22 6 2013 514 270 23 38 chr1 187294470 187294601 -9900831 - ID_B1 SINE B4 -12 212 84 6 2013 476 308 25 12 chr1 187294877 187295038 -9900394 - MER90a LTR ERV1 -100 514 352 6 2013 474 259 8 49 chr1 187295827 187295949 -9899483 + PB1D10 SINE Alu 1 117 0 6 2013 312 48 0 0 chr1 187297128 187297170 -9898262 + (TAAAAA)n Simple_repeat Simple_repeat 5 46 0 6 2013 295 276 0 8 chr1 187297270 187297356 -9898076 - MLT1B LTR MaLR 0 467 324 6 2013 260 120 20 0 chr1 187297392 187297442 -9897990 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 2013 363 194 150 20 chr1 187297504 187297604 -9897828 - B4A SINE B4 -46 246 134 6 2013 773 230 115 83 chr1 187297622 187298012 -9897420 - RLTR28B LTR ERVL -39 442 1 6 2013 386 240 67 39 chr1 187298030 187298134 -9897298 - B4A SINE B4 -182 110 4 6 2013 336 83 0 0 chr1 187298437 187298485 -9896947 + (CTAA)n Simple_repeat Simple_repeat 3 50 0 6 2013 1781 264 23 40 chr1 187298534 187299056 -9896376 - Lx8 LINE L1 -2 7471 6959 6 2013 430 294 99 129 chr1 187299092 187299424 -9896008 + RMER5 LTR ERV1 116 437 -97 6 2013 1320 208 195 22 chr1 187299427 187299786 -9895646 - MTC LTR MaLR 0 421 1 6 2013 370 233 0 22 chr1 187299786 187299877 -9895555 + RMER5 LTR ERV1 436 524 -10 6 2013 518 236 45 0 chr1 187300674 187300784 -9894648 - PB1D10 SINE Alu -1 116 2 6 2013 236 313 0 0 chr1 187300725 187300792 -9894640 - B4 SINE B4 -147 145 79 6 2013 232 289 33 78 chr1 187300914 187301004 -9894428 + Charlie8 DNA MER1_type 202 287 -2141 6 2013 32 26 0 0 chr1 187301064 187301103 -9894329 + AT_rich Low_complexity Low_complexity 1 39 0 6 2013 221 190 0 23 chr1 187301103 187301146 -9894286 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 2013 441 314 50 14 chr1 187301148 187301287 -9894145 - RSINE1 SINE B4 0 165 22 6 2013 3050 151 2 6 chr1 187301380 187301888 -9893544 - L1_Mm LINE L1 -795 5088 4583 6 2014 1691 158 82 3 chr1 187301888 187302218 -9893214 + Lx LINE L1 6299 6654 0 6 2014 233 196 36 0 chr1 187302574 187302630 -9892802 + (CAGA)n Simple_repeat Simple_repeat 4 61 0 6 2014 2578 60 61 26 chr1 187302640 187302984 -9892448 + RLTR10D LTR ERVK 1 356 -3 6 2014 258 32 0 0 chr1 187302984 187303015 -9892417 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 2014 1599 235 59 30 chr1 187303033 187303541 -9891891 - RLTR11A2 LTR ERVK 0 527 5 6 2014 228 287 127 95 chr1 187303822 187304011 -9891421 + ORR1D2 LTR MaLR 169 363 -7 6 2014 272 293 0 17 chr1 187304670 187304729 -9890703 - PB1D10 SINE Alu -18 99 42 6 2014 333 313 0 0 chr1 187304725 187304808 -9890624 - BC1_Mm scRNA scRNA -69 83 1 6 2014 362 147 15 0 chr1 187304812 187304880 -9890552 + CT-rich Low_complexity Low_complexity 2 70 0 6 2014 389 236 27 53 chr1 187305097 187305211 -9890221 - PB1D10 SINE Alu 0 117 3 6 2014 1689 36 0 0 chr1 187305226 187305419 -9890013 - B2_Mm1a SINE B2 0 193 1 6 2014 359 89 0 18 chr1 187305545 187305602 -9889830 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 2014 394 270 121 21 chr1 187305609 187305749 -9889683 - RSINE1 SINE B4 -9 156 3 6 2014 830 215 102 10 chr1 187306423 187306620 -9888812 + B3 SINE B2 2 216 0 6 2014 835 234 85 0 chr1 187306662 187306850 -9888582 + B3 SINE B2 5 208 -8 6 2014 686 211 8 0 chr1 187306926 187307049 -9888383 + B4A SINE B4 106 229 -63 6 2014 655 211 49 0 chr1 187307051 187307174 -9888258 + B1_Mur1 SINE Alu 3 131 -18 6 2014 263 286 70 14 chr1 187307204 187307275 -9888157 + RSINE1 SINE B4 89 163 -2 6 2014 954 26 0 0 chr1 187308580 187308693 -9886739 + (TCTCCC)n Simple_repeat Simple_repeat 6 118 0 6 2014 227 258 97 43 chr1 187308693 187308786 -9886646 + Charlie24 DNA MER1_type 2350 2447 -3 6 2014 270 0 0 0 chr1 187308893 187308923 -9886509 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 2014 321 26 0 0 chr1 187309055 187309093 -9886339 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 2014 1084 234 141 36 chr1 187309405 187309768 -9885664 - MTD LTR MaLR -14 405 5 6 2014 180 321 11 69 chr1 187309981 187310068 -9885364 + MIR SINE MIR 31 112 -96 6 2014 508 282 0 41 chr1 187310651 187310773 -9884659 + RSINE1 SINE B4 38 154 -11 6 2014 918 244 14 14 chr1 187311485 187311513 -9883919 - B3 SINE B2 0 216 188 6 2014 369 0 0 0 chr1 187311513 187311554 -9883878 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 2014 918 244 14 14 chr1 187311554 187311741 -9883691 - B3 SINE B2 -29 187 1 6 2014 189 0 53 53 chr1 187312474 187312512 -9882920 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 2014 223 203 31 78 chr1 187312919 187312983 -9882449 + B3A SINE B2 2 62 -136 6 2014 618 254 197 33 chr1 187313057 187313772 -9881660 - L1M3 LINE L1 -2883 3263 2407 6 2014 1121 138 151 28 chr1 187315295 187315586 -9879846 - RMER17C LTR ERVK 0 410 84 6 2014 889 187 20 57 chr1 187315575 187315853 -9879579 - RMER17C LTR ERVK -163 247 1 6 2014 459 0 0 0 chr1 187316372 187316423 -9879009 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 2014 273 298 23 76 chr1 187317317 187317448 -9877984 - MIR SINE MIR -122 140 17 6 2014 3884 309 89 45 chr1 187318265 187319288 -9876144 - L1M2 LINE L1 -280 5600 4610 6 2014 315 0 0 0 chr1 187319288 187319323 -9876109 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 2014 3884 301 89 23 chr1 187319323 187321043 -9874389 - L1M2 LINE L1 -1502 4641 2798 6 2014 1127 131 132 25 chr1 187324764 187324968 -9870464 + URR1A DNA MER1_type 1 226 0 6 2014 509 253 30 42 chr1 187326313 187326478 -9868954 - MER96B DNA hAT -249 168 6 6 2014 357 102 0 0 chr1 187326840 187326899 -9868533 + (T)n Simple_repeat Simple_repeat 1 59 0 6 2014 1210 61 0 7 chr1 187326902 187327050 -9868382 - B1_Mus1 SINE Alu 0 148 2 6 2014 1107 23 0 0 chr1 187327050 187327180 -9868252 + (TTC)n Simple_repeat Simple_repeat 2 131 0 6 2014 553 270 136 89 chr1 187327254 187327726 -9867706 - Lx8 LINE L1 -59 7414 6921 6 2014 725 235 82 58 chr1 187328133 187328341 -9867091 - B3 SINE B2 0 216 4 6 2014 640 269 18 67 chr1 187328824 187329047 -9866385 + B3 SINE B2 1 212 -4 6 2014 186 43 0 0 chr1 187329142 187329165 -9866267 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 2014 1059 66 0 0 chr1 187329179 187329315 -9866117 - B1_Mus1 SINE Alu 0 148 13 6 2014 613 194 13 53 chr1 187329315 187329328 -9866104 - ID_B1 SINE B4 0 221 79 6 2014 444 118 0 0 chr1 187329399 187329467 -9865965 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 2014 520 266 178 33 chr1 187329472 187329713 -9865719 - B4A SINE B4 -15 277 2 6 2014 356 196 48 124 chr1 187329988 187330055 -9865377 - MTEa LTR MaLR 0 379 320 6 2014 1140 44 0 7 chr1 187330055 187330192 -9865240 + B1_Mm SINE Alu 1 136 -11 6 2014 477 0 0 0 chr1 187330192 187330245 -9865187 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 6 2014 356 202 51 123 chr1 187330245 187330294 -9865138 - MTEa LTR MaLR -60 319 252 6 2014 383 303 61 0 chr1 187330623 187330722 -9864710 + PB1D10 SINE Alu 13 117 0 7 2014 300 264 30 37 chr1 187331168 187331302 -9864130 + L1MD LINE L1 2542 2674 -3472 7 2014 441 264 18 0 chr1 187331318 187331428 -9864004 + PB1D10 SINE Alu 6 117 0 7 2014 388 328 118 39 chr1 187331463 187331717 -9863715 + L1M4 LINE L1 2671 2944 -3202 7 2014 306 0 0 0 chr1 187331765 187331799 -9863633 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 2014 274 260 12 72 chr1 187331972 187332055 -9863377 - B4A SINE B4 -29 263 186 7 2014 380 255 47 38 chr1 187332071 187332177 -9863255 - RSINE1 SINE B4 -34 131 25 7 2014 300 27 0 0 chr1 187332213 187332250 -9863182 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 2014 904 251 19 110 chr1 187332259 187332523 -9862909 - B4A SINE B4 -8 284 45 7 2014 787 166 27 33 chr1 187332758 187332908 -9862524 - B1_Mur4 SINE Alu 0 150 2 7 2014 198 268 24 0 chr1 187333813 187333936 -9861496 + GA-rich Low_complexity Low_complexity 1 126 0 7 2014 367 287 221 13 chr1 187333979 187334205 -9861227 - B4A SINE B4 -18 274 2 7 2014 434 299 37 0 chr1 187334336 187334470 -9860962 - MTEb LTR MaLR -3 376 238 7 2014 236 184 78 7 chr1 187334922 187335075 -9860357 + (TG)n Simple_repeat Simple_repeat 2 165 0 7 2014 451 238 49 27 chr1 187335085 187335496 -9859936 + (TG)n Simple_repeat Simple_repeat 1 420 0 7 2014 444 342 12 47 chr1 187335501 187335670 -9859762 - RSINE1 SINE B4 -1 164 2 7 2014 869 253 66 8 chr1 187336089 187336348 -9859084 - B4A SINE B4 -18 274 1 7 2014 838 247 80 57 chr1 187336351 187336738 -9858694 - L1MA6 LINE L1 -50 6250 5855 7 2014 245 146 60 30 chr1 187336829 187336963 -9858469 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 7 2014 1449 242 136 36 chr1 187336964 187337470 -9857962 - RLTR31B_Mm LTR ERVK 0 557 1 7 2014 423 128 42 17 chr1 187337470 187337589 -9857843 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 7 2014 797 96 11 68 chr1 187337619 187337810 -9857622 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 2014 235 70 116 0 chr1 187337842 187337885 -9857547 - L1MA6 LINE L1 -523 5777 5730 7 2014 296 279 85 29 chr1 187337866 187338143 -9857289 - L1M2 LINE L1 -453 5703 5387 7 2014 548 324 83 44 chr1 187338156 187338356 -9857076 + B4A SINE B4 6 220 -72 7 2014 980 221 34 5 chr1 187338356 187338565 -9856867 + B3 SINE B2 1 215 -1 7 2014 548 324 83 44 chr1 187338565 187338616 -9856816 + B4A SINE B4 221 267 -25 7 2014 186 43 0 0 chr1 187338626 187338649 -9856783 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 2014 243 0 0 0 chr1 187338702 187338729 -9856703 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 7 2014 689 239 314 45 chr1 187338790 187339077 -9856355 + ORR1E LTR MaLR 1 365 -14 7 2014 344 71 18 0 chr1 187339190 187339246 -9856186 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 7 2014 308 355 81 16 chr1 187340084 187340207 -9855225 + MIR SINE MIR 21 151 -111 7 2014 259 253 70 35 chr1 187340443 187340529 -9854903 + MLT1A1 LTR MaLR 308 396 -12 7 2014 594 303 32 50 chr1 187340861 187341080 -9854352 - ID_B1 SINE B4 -4 220 6 7 2014 2336 172 43 23 chr1 187341083 187341523 -9853909 - Lx5 LINE L1 -3 7047 6599 7 2014 232 85 42 21 chr1 187341554 187341602 -9853830 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 2014 348 83 0 0 chr1 187341747 187341795 -9853637 + (TCCCC)n Simple_repeat Simple_repeat 5 52 0 7 2014 1153 82 0 0 chr1 187341810 187341957 -9853475 - B1_Mus2 SINE Alu 0 147 1 7 2014 1528 28 0 0 chr1 187342021 187342201 -9853231 + MTA_Mm LTR MaLR 217 396 0 7 2014 8629 26 0 0 chr1 187342201 187343229 -9852203 + MTA_Mm-int LTR MaLR 1 1028 -70 7 2014 489 147 13 0 chr1 187343220 187343295 -9852137 - B1_Mus2 SINE Alu -71 76 1 7 2014 279 266 35 81 chr1 187343295 187343306 -9852126 - MT2B LTR ERVL -368 233 152 7 2014 244 214 71 0 chr1 187343532 187343602 -9851830 - L1MA7 LINE L1 -77 6214 6140 7 2014 345 192 24 131 chr1 187343679 187343763 -9851669 - ORR1E LTR MaLR -284 75 1 7 2014 587 220 2 13 chr1 187344384 187345012 -9850420 + (TG)n Simple_repeat Simple_repeat 1 620 0 7 2014 471 294 162 9 chr1 187345013 187345270 -9850162 - B4A SINE B4 -2 290 1 7 2014 1284 116 0 0 chr1 187345621 187345916 -9849516 + (TCCA)n Simple_repeat Simple_repeat 1 295 0 7 2014 444 191 0 0 chr1 187345923 187346017 -9849415 + (CCAA)n Simple_repeat Simple_repeat 2 95 0 7 2014 417 292 38 28 chr1 187346026 187346156 -9849276 - ORR1E LTR MaLR -245 125 1 7 2014 334 311 75 49 chr1 187346211 187346457 -9848975 + L1MC4 LINE L1 6935 7180 -702 7 2014 954 187 114 5 chr1 187346530 187346740 -9848692 + MTD LTR MaLR 183 415 -4 7 2014 429 188 160 27 chr1 187346744 187346894 -9848538 + MTD-int LTR MaLR 1 177 -1193 7 2014 306 0 0 0 chr1 187347002 187347036 -9848396 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 2014 1075 262 227 53 chr1 187347194 187347625 -9847807 + MTD-int LTR MaLR 184 689 -569 7 2014 219 114 0 0 chr1 187348543 187348578 -9846854 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 2014 276 290 0 0 chr1 187348738 187348807 -9846625 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 2014 243 0 0 0 chr1 187349166 187349193 -9846239 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 2014 425 280 14 61 chr1 187349230 187349467 -9845965 - L1PB4 LINE L1 -408 5892 5611 7 2014 785 195 19 47 chr1 187349590 187349803 -9845629 + B3 SINE B2 2 195 0 7 2014 30 0 0 0 chr1 187349931 187349961 -9845471 + AT_rich Low_complexity Low_complexity 1 30 0 7 2014 339 299 42 49 chr1 187349984 187350128 -9845304 - RSINE1 SINE B4 -21 144 2 7 2014 1728 186 110 16 chr1 187350502 187350885 -9844547 + MTD LTR MaLR 1 419 0 7 2014 1853 170 65 60 chr1 187350890 187351059 -9844373 + ORR1C2 LTR MaLR 1 169 -215 7 2014 183 80 0 0 chr1 187351059 187351084 -9844348 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 7 2014 1853 170 65 60 chr1 187351084 187351124 -9844308 + ORR1C2 LTR MaLR 170 190 -194 7 2014 198 0 0 0 chr1 187351124 187351146 -9844286 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 7 2014 1853 170 65 60 chr1 187351146 187351317 -9844115 + ORR1C2 LTR MaLR 191 384 0 7 2014 488 295 183 35 chr1 187351581 187351778 -9843654 - RMER15 LTR ERVL -14 561 336 7 2014 206 205 26 0 chr1 187352004 187352043 -9843389 + L2c LINE L2 3291 3330 -57 7 2014 221 240 0 20 chr1 187352296 187352347 -9843085 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 2014 687 275 63 0 chr1 187352401 187352590 -9842842 - MTEa LTR MaLR -10 369 169 7 2014 750 289 28 23 chr1 187352659 187352875 -9842557 - MTEa LTR MaLR -162 217 1 7 2014 308 240 234 23 chr1 187353075 187353266 -9842166 - MER74A LTR ERVL -258 300 1 7 2014 290 152 0 0 chr1 187353377 187353423 -9842009 - RMER15 LTR ERVL -104 471 426 7 2014 626 223 244 0 chr1 187353505 187353702 -9841730 - Lx8 LINE L1 -249 7224 6980 7 2014 1976 170 6 16 chr1 187353757 187354121 -9841311 + Lx LINE L1 6289 6648 -6 7 2014 948 204 31 0 chr1 187354176 187354367 -9841065 + B3 SINE B2 20 216 0 7 2014 613 267 10 65 chr1 187354415 187354615 -9840817 - B3A SINE B2 -6 192 4 7 2014 1373 70 42 16 chr1 187354890 187355080 -9840352 + B2_Mm2 SINE B2 1 195 0 7 2014 423 56 0 0 chr1 187355196 187355250 -9840182 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 2014 652 277 34 14 chr1 187356139 187356348 -9839084 - ID_B1 SINE B4 -9 215 3 7 2014 216 163 0 0 chr1 187356377 187356420 -9839012 + CT-rich Low_complexity Low_complexity 2 44 0 7 2014 288 0 0 0 chr1 187356420 187356452 -9838980 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 2014 180 0 0 0 chr1 187356512 187356532 -9838900 + (T)n Simple_repeat Simple_repeat 1 20 0 7 2014 463 317 35 14 chr1 187356596 187356737 -9838695 - LTR75 LTR ERVL 0 562 419 7 2014 554 254 34 27 chr1 187356780 187356926 -9838506 - LTR75 LTR ERVL -219 343 197 7 2014 621 0 0 0 chr1 187356928 187356997 -9838435 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 7 2014 463 43 14 28 chr1 187356997 187357068 -9838364 + (TCCC)n Simple_repeat Simple_repeat 2 71 0 7 2014 224 264 203 29 chr1 187357210 187357343 -9838089 + MIR SINE MIR 7 168 -108 7 2014 207 0 0 0 chr1 187357343 187357366 -9838066 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 2014 997 72 0 42 chr1 187357368 187357512 -9837920 - B1_Mus1 SINE Alu 0 148 11 7 2014 1011 259 83 7 chr1 187357519 187357795 -9837637 + ORR1E LTR MaLR 3 299 -60 7 2014 21 36 0 0 chr1 187358525 187358553 -9836879 + AT_rich Low_complexity Low_complexity 1 28 0 7 2014 207 0 0 0 chr1 187358597 187358620 -9836812 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 7 2014 976 277 37 15 chr1 187359568 187359839 -9835593 - B4A SINE B4 -14 278 2 7 2014 2056 82 89 0 chr1 187360884 187361177 -9834255 - ORR1A2 LTR MaLR -8 319 1 7 2014 511 306 41 118 chr1 187361252 187361567 -9833865 - B4 SINE B4 0 292 2 7 2014 195 42 0 0 chr1 187361947 187361971 -9833461 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 7 2014 900 222 76 0 chr1 187362142 187362327 -9833105 - ID_B1 SINE B4 -15 209 11 7 2014 265 376 34 0 chr1 187362790 187362907 -9832525 - Charlie9 DNA MER1_type -2630 127 7 7 2014 3882 115 22 25 chr1 187363365 187363955 -9831477 - Lx3C LINE L1 -2 6974 6387 7 2014 397 292 156 46 chr1 187363959 187364196 -9831236 - B4 SINE B4 -29 263 1 7 2014 942 65 7 14 chr1 187364313 187364454 -9830978 + (TTCCC)n Simple_repeat Simple_repeat 3 142 0 7 2014 667 207 6 11 chr1 187364492 187364668 -9830764 + CT-rich Low_complexity Low_complexity 2 176 0 7 2014 313 326 81 34 chr1 187364669 187364818 -9830614 - HAL1 LINE L1 -419 2439 2284 7 2014 477 127 0 0 chr1 187364819 187364898 -9830534 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 7 2014 458 319 79 38 chr1 187364943 187365210 -9830222 - MLT1E2 LTR MaLR -75 552 275 7 2014 508 191 0 0 chr1 187365293 187365377 -9830055 - MTD LTR MaLR -172 247 164 7 2014 336 24 0 0 chr1 187366392 187366433 -9828999 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 2014 313 326 99 34 chr1 187366434 187366786 -9828646 - HAL1 LINE L1 -423 2084 1710 7 2014 31 58 0 0 chr1 187366948 187367000 -9828432 + AT_rich Low_complexity Low_complexity 1 52 0 7 2014 334 295 118 75 chr1 187367376 187367827 -9827605 - HAL1 LINE L1 -897 1610 1141 7 2014 768 226 155 0 chr1 187367870 187368051 -9827381 - B3 SINE B2 0 216 8 7 2014 214 310 0 17 chr1 187368556 187368615 -9826817 + L3 LINE CR1 3904 3961 -528 8 2014 228 370 32 32 chr1 187368761 187368856 -9826576 - MIR SINE MIR -152 110 16 8 2014 311 381 84 45 chr1 187368872 187369207 -9826225 + L3 LINE CR1 4031 4378 -111 8 2014 275 307 34 1 chr1 187369413 187369517 -9825915 - MIRc SINE MIR -160 108 2 8 2014 252 184 0 0 chr1 187370229 187370278 -9825154 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 2014 288 267 26 71 chr1 187370520 187370633 -9824799 + MIRb SINE MIR 37 151 -117 8 2014 2536 125 138 5 chr1 187370970 187371397 -9824035 - Lx4A LINE L1 0 7058 6575 8 2014 920 211 6 24 chr1 187371712 187371882 -9823550 + B3 SINE B2 1 167 -49 8 2014 333 0 0 0 chr1 187371882 187371919 -9823513 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 8 2014 192 200 0 0 chr1 187372000 187372050 -9823382 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 2014 478 216 8 41 chr1 187372314 187372435 -9822997 + PB1D10 SINE Alu 1 117 0 8 2014 746 271 109 41 chr1 187373747 187374013 -9821419 + B4 SINE B4 4 287 -5 8 2014 215 262 0 12 chr1 187374024 187374105 -9821327 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 2014 836 226 0 13 chr1 187374122 187374424 -9821008 + (CA)n Simple_repeat Simple_repeat 1 297 0 8 2014 351 0 0 0 chr1 187375120 187375159 -9820273 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 2014 964 301 11 28 chr1 187375164 187375451 -9819981 - B4 SINE B4 0 292 11 8 2014 989 108 6 22 chr1 187375474 187375653 -9819779 + (TCTCC)n Simple_repeat Simple_repeat 2 177 0 8 2014 226 175 15 45 chr1 187375672 187375738 -9819694 + CT-rich Low_complexity Low_complexity 4 67 0 8 2014 470 114 0 12 chr1 187375744 187375824 -9819608 + (TCCC)n Simple_repeat Simple_repeat 1 79 0 8 2014 367 296 10 10 chr1 187375849 187375948 -9819484 - PB1D10 SINE Alu -18 99 1 8 2014 345 174 10 20 chr1 187376082 187376182 -9819250 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 8 2014 1411 236 92 24 chr1 187376964 187377299 -9818133 + ORR1D2 LTR MaLR 1 358 -12 8 2014 615 27 0 0 chr1 187377485 187377558 -9817874 + (GA)n Simple_repeat Simple_repeat 2 74 0 8 2014 1240 232 93 55 chr1 187377878 187378243 -9817189 + MTE2a LTR MaLR 1 379 0 8 2014 316 188 153 0 chr1 187378376 187378461 -9816971 - PB1 SINE Alu -18 109 12 8 2014 287 359 13 0 chr1 187378648 187378726 -9816706 - ID2 SINE ID -4 79 1 8 2014 473 252 10 0 chr1 187379648 187379747 -9815685 + Lx7 LINE L1 5610 5709 -1987 8 2014 647 252 0 13 chr1 187379897 187380046 -9815386 + B1F SINE Alu 3 149 0 8 2014 211 324 0 75 chr1 187380201 187380281 -9815151 + L2a LINE L2 3343 3416 -10 8 2014 794 274 95 40 chr1 187380911 187381118 -9814314 + B4A SINE B4 2 233 -59 8 2014 1169 256 87 17 chr1 187381118 187381464 -9813968 + ORR1D2 LTR MaLR 1 370 0 8 2014 794 274 95 40 chr1 187381464 187381530 -9813902 + B4A SINE B4 234 290 -2 8 2014 217 250 14 14 chr1 187381534 187381603 -9813829 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 2014 231 245 0 0 chr1 187382524 187382618 -9812814 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 2014 231 36 0 0 chr1 187382629 187382657 -9812775 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 8 2014 1126 86 0 0 chr1 187382659 187382799 -9812633 - B1_Mm SINE Alu -7 140 1 8 2014 459 240 7 10 chr1 187382804 187383096 -9812336 + (TG)n Simple_repeat Simple_repeat 1 290 0 8 2014 978 249 53 29 chr1 187383120 187383401 -9812031 - B4A SINE B4 0 292 5 8 2014 430 255 60 75 chr1 187384545 187384953 -9810479 - RLTR12B LTR ERVK -14 514 1 8 2014 721 256 37 63 chr1 187385754 187386054 -9809378 - B4A SINE B4 0 292 1 8 2014 363 310 27 33 chr1 187386119 187386269 -9809163 + B1F SINE Alu 1 149 0 8 2014 1035 273 186 63 chr1 187386668 187387496 -9807936 - Lx7 LINE L1 -17 7679 6750 8 2014 4567 8 0 0 chr1 187387511 187388004 -9807428 - MT2_Mm LTR ERVL 0 493 1 8 2014 319 0 0 0 chr1 187388004 187388042 -9807390 - MERVL-int LTR ERVL 0 5485 5448 8 2014 412 123 13 40 chr1 187388042 187388118 -9807314 - ORR1A3-int LTR MaLR -1323 640 567 8 2014 48521 16 6 0 chr1 187388118 187393456 -9801976 - MERVL-int LTR ERVL -114 5371 1 8 2014 4541 10 0 0 chr1 187393456 187393949 -9801483 - MT2_Mm LTR ERVL 0 493 1 8 2014 822 294 16 16 chr1 187394393 187394635 -9800797 + B4A SINE B4 27 268 -24 8 2014 295 276 0 0 chr1 187395082 187395158 -9800274 + ID4 SINE ID 6 81 -2 8 2014 227 316 26 0 chr1 187395207 187395283 -9800149 + L1MC1 LINE L1 6095 6172 -161 8 2014 227 233 40 14 chr1 187395314 187395388 -9800044 + L1MC1 LINE L1 6248 6323 -10 8 2014 444 156 18 9 chr1 187396445 187396555 -9798877 + GA-rich Low_complexity Low_complexity 1 111 0 8 2014 180 77 0 0 chr1 187397055 187397081 -9798351 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 8 2014 309 26 0 0 chr1 187397386 187397424 -9798008 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 2014 594 333 78 0 chr1 187397915 187398119 -9797313 + B4 SINE B4 48 267 -25 8 2014 297 0 0 0 chr1 187398164 187398197 -9797235 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 2014 369 0 0 0 chr1 187399257 187399298 -9796134 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 2014 376 254 50 50 chr1 187399299 187399440 -9795992 - B1F1 SINE Alu -8 141 1 8 2014 435 254 98 0 chr1 187399493 187399595 -9795837 - ID_B1 SINE B4 -32 192 85 8 2014 309 51 0 0 chr1 187399601 187399640 -9795792 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 8 2014 746 207 172 0 chr1 187399641 187399810 -9795622 - B3 SINE B2 -14 202 5 8 2014 577 311 66 9 chr1 187401051 187401262 -9794170 - ORR1E LTR MaLR -134 225 3 8 2014 376 302 100 19 chr1 187401413 187401683 -9793749 - B4A SINE B4 0 292 1 8 2014 225 0 0 0 chr1 187401985 187402010 -9793422 + (T)n Simple_repeat Simple_repeat 1 25 0 8 2014 26 0 0 0 chr1 187402769 187402795 -9792637 + AT_rich Low_complexity Low_complexity 1 26 0 8 2014 402 21 0 0 chr1 187402795 187402842 -9792590 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 2014 423 0 0 0 chr1 187402842 187402888 -9792544 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 2014 3124 291 68 33 chr1 187403118 187404610 -9790822 - L1M2 LINE L1 -1375 5470 3920 8 2014 673 248 21 0 chr1 187404610 187404755 -9790677 - B1_Mur1 SINE Alu 0 149 2 8 2014 3124 291 68 33 chr1 187404755 187404803 -9790629 - L1M2 LINE L1 -2926 3919 3876 8 2014 286 264 28 9 chr1 187404994 187405101 -9790331 + L1MC LINE L1 2932 3040 -3106 8 2014 242 148 19 0 chr1 187405240 187405294 -9790138 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 2014 533 176 0 0 chr1 187405295 187405386 -9790046 + B1_Mur1 SINE Alu 59 149 0 8 2014 495 195 249 52 chr1 187405392 187405565 -9789867 - B3 SINE B2 -6 210 4 8 2014 503 309 68 31 chr1 187405587 187405881 -9789551 - L1M2 LINE L1 -3391 3454 3150 8 2014 2763 286 128 36 chr1 187406424 187407787 -9787645 - Lx9 LINE L1 -1 7643 6156 8 2014 387 252 67 25 chr1 187407989 187408219 -9787213 - L1M2 LINE L1 -3809 3036 2793 8 2014 2269 164 29 17 chr1 187408298 187408714 -9786718 + MTC LTR MaLR 1 421 0 8 2014 527 86 0 24 chr1 187409100 187409183 -9786249 + (AGGGGG)n Simple_repeat Simple_repeat 4 84 0 8 2014 314 183 206 38 chr1 187409183 187409290 -9786142 + B3A SINE B2 28 162 -36 8 2014 459 0 0 0 chr1 187409290 187409341 -9786091 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 2014 298 183 206 38 chr1 187409341 187409364 -9786068 + B2_Mm2 SINE B2 159 180 -15 8 2014 241 347 96 33 chr1 187410420 187410754 -9784678 - L1M5 LINE L1 -1276 4870 4516 8 2014 259 359 6 70 chr1 187411779 187411935 -9783497 + MamSINE1 SINE tRNA 6 151 -139 8 2014 3626 197 210 0 chr1 187413061 187413173 -9782259 - RMER1A Other Other -1 1029 912 8 2014 432 0 0 0 chr1 187413173 187413221 -9782211 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 2014 3626 197 210 0 chr1 187413221 187413922 -9781510 - RMER1A Other Other -119 911 46 8 2014 240 363 33 0 chr1 187414066 187414157 -9781275 - L2a LINE L2 -22 3404 3311 8 2014 498 196 0 0 chr1 187414487 187414594 -9780838 + (TG)n Simple_repeat Simple_repeat 1 107 0 8 2014 202 216 27 0 chr1 187415028 187415102 -9780330 + (CACAA)n Simple_repeat Simple_repeat 2 77 0 8 2014 2329 104 6 9 chr1 187415234 187415564 -9779868 - ORR1A4 LTR MaLR 0 329 1 8 2014 646 281 25 0 chr1 187415639 187415799 -9779633 + RSINE1 SINE B4 1 164 -1 8 2014 1014 239 151 23 chr1 187415806 187416157 -9779275 - Lx9 LINE L1 -171 7473 7078 8 2014 655 252 24 24 chr1 187416185 187416392 -9779040 + MTEa LTR MaLR 11 217 -162 8 2014 440 35 17 0 chr1 187416576 187416634 -9778798 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 8 2014 213 39 0 0 chr1 187417195 187417221 -9778211 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 2014 180 0 0 0 chr1 187417264 187417284 -9778148 + (T)n Simple_repeat Simple_repeat 1 20 0 8 2014 913 214 28 14 chr1 187417738 187417951 -9777481 - B3 SINE B2 0 216 1 8 2014 360 289 67 4 chr1 187417956 187418129 -9777303 - ID_B1 SINE B4 -2 222 13 8 2014 354 157 38 15 chr1 187418174 187418254 -9777178 + RMER1A Other Other 307 432 -634 8 2014 493 288 57 47 chr1 187418655 187418848 -9776584 - Lx8 LINE L1 -2 7471 7277 8 2014 277 282 24 0 chr1 187418857 187418942 -9776490 - MER58B DNA MER1_type -128 213 127 8 2014 288 254 0 0 chr1 187419373 187419436 -9775996 + (CCCA)n Simple_repeat Simple_repeat 2 64 0 8 2014 504 48 0 0 chr1 187419439 187419502 -9775930 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 8 2014 456 231 48 103 chr1 187419502 187419647 -9775785 - RSINE1 SINE B4 -28 137 1 8 2014 235 348 90 36 chr1 187419652 187419819 -9775613 - LTR53 LTR ERVL 0 519 344 8 2014 1123 119 112 56 chr1 187420370 187420584 -9774848 - URR1A DNA MER1_type 0 226 1 8 2014 261 0 0 0 chr1 187421089 187421118 -9774314 + (CAT)n Simple_repeat Simple_repeat 3 31 0 8 2014 1084 208 9 9 chr1 187421229 187421443 -9773989 + B3 SINE B2 1 214 -2 8 2014 1529 266 62 19 chr1 187421464 187421896 -9773536 - Lx6 LINE L1 -63 7397 6947 8 2014 204 302 73 58 chr1 187422023 187422160 -9773272 + MIRb SINE MIR 55 193 -75 8 2014 279 308 14 27 chr1 187422348 187422495 -9772937 - MIR SINE MIR -1 261 117 8 2014 876 243 22 22 chr1 187423882 187424109 -9771323 + MTD LTR MaLR 1 227 -192 9 2014 1578 96 29 0 chr1 187424109 187424349 -9771083 - ORR1A2 LTR MaLR -2 325 79 9 2014 194 184 0 0 chr1 187424653 187424691 -9770741 + L2c LINE L2 3346 3383 -4 9 2014 813 206 174 0 chr1 187425668 187425852 -9769580 - B3 SINE B2 0 216 1 9 2014 388 253 11 0 chr1 187426306 187426393 -9769039 - ID_B1 SINE B4 -33 191 104 9 2014 516 200 58 22 chr1 187428103 187428241 -9767191 - B1F SINE Alu -2 147 5 9 2014 2427 4 0 0 chr1 187428974 187429240 -9766192 - L1Md_A LINE L1 0 6582 6317 9 2014 400 280 44 36 chr1 187429249 187429386 -9766046 - RSINE1 SINE B4 -26 139 2 9 2014 838 219 117 72 chr1 187429918 187430183 -9765249 - B4A SINE B4 -13 279 3 9 2014 838 260 5 48 chr1 187430198 187430408 -9765024 - B4 SINE B4 -84 208 8 9 2014 354 227 28 0 chr1 187430620 187430725 -9764707 - B1F2 SINE Alu -18 131 23 9 2014 375 242 57 48 chr1 187430730 187430871 -9764561 + L1MA4 LINE L1 5759 5918 -382 9 2014 2886 49 0 3 chr1 187431231 187431578 -9763854 - ORR1A1 LTR MaLR 0 346 1 9 2014 532 297 145 13 chr1 187431895 187432130 -9763302 - MER2 DNA MER2_type 0 345 80 9 2014 388 287 51 0 chr1 187432745 187432902 -9762530 - MER5A1 DNA MER1_type -1 165 1 9 2015 603 247 18 16 chr1 187433132 187433286 -9762146 + ORR1D2 LTR MaLR 2 167 -192 9 2015 4373 148 67 31 chr1 187433286 187434104 -9761328 - RMER13A LTR ERVK -11 849 2 9 2015 963 186 127 5 chr1 187434104 187434309 -9761123 + ORR1D2 LTR MaLR 138 367 -3 9 2015 207 0 0 0 chr1 187435815 187435838 -9759594 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 9 2015 849 135 24 55 chr1 187435840 187436004 -9759428 - B2_Mm2 SINE B2 -34 161 3 9 2015 444 82 0 0 chr1 187436123 187436184 -9759248 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 2015 548 290 119 71 chr1 187436339 187437189 -9758243 - L1ME1 LINE L1 -282 5897 4992 9 2015 686 97 41 7 chr1 187437258 187437403 -9758029 + (CA)n Simple_repeat Simple_repeat 2 151 0 9 2015 235 163 65 18 chr1 187437436 187437605 -9757827 + (CA)n Simple_repeat Simple_repeat 1 177 0 9 2015 313 300 132 21 chr1 187437620 187437862 -9757570 - L1ME1 LINE L1 -1445 4701 4433 9 2015 249 55 0 85 chr1 187438829 187438888 -9756544 + (TCTCTG)n Simple_repeat Simple_repeat 1 54 0 9 2015 408 40 0 0 chr1 187438916 187438966 -9756466 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 9 2015 206 62 31 0 chr1 187439310 187439342 -9756090 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 9 2015 287 49 24 0 chr1 187440730 187440771 -9754661 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 2015 294 270 67 11 chr1 187440822 187440912 -9754520 + LTR79 LTR ERVL 221 315 -212 9 2015 396 0 0 0 chr1 187441405 187441449 -9753983 + (TTA)n Simple_repeat Simple_repeat 3 46 0 9 2015 357 262 131 34 chr1 187443582 187443883 -9751549 + MTE2a LTR MaLR 51 378 -1 9 2015 4536 12 0 0 chr1 187445087 187445580 -9749852 - MT2_Mm LTR ERVL 0 493 1 9 2015 321 0 0 0 chr1 187445580 187445618 -9749814 - MERVL-int LTR ERVL 0 5485 5448 9 2015 331 191 46 35 chr1 187445618 187445705 -9749727 - ORR1A3-int LTR MaLR -1323 640 553 9 2015 48455 15 6 0 chr1 187445705 187451031 -9744401 - MERVL-int LTR ERVL -125 5360 1 9 2015 4536 12 0 0 chr1 187451031 187451524 -9743908 - MT2_Mm LTR ERVL 0 493 1 9 2015 255 109 0 0 chr1 187451529 187451569 -9743863 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 9 2015 207 0 0 0 chr1 187451569 187451592 -9743840 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 9 2015 659 247 35 49 chr1 187451678 187451888 -9743544 - B3A SINE B2 -4 212 8 9 2015 1849 145 157 3 chr1 187451924 187452242 -9743190 - ORR1B2 LTR MaLR 0 367 1 9 2015 581 72 0 12 chr1 187453333 187453417 -9742015 + (TA)n Simple_repeat Simple_repeat 2 84 0 9 2015 380 20 20 0 chr1 187453481 187453530 -9741902 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 2015 303 261 0 0 chr1 187453540 187453609 -9741823 - RSINE1 SINE B4 -36 129 61 9 2015 332 238 0 24 chr1 187453690 187453772 -9741660 + MER67C LTR ERV1 1 80 -631 9 2015 244 319 139 0 chr1 187453793 187453937 -9741495 - L2 LINE L2 -1011 2408 2245 9 2015 201 244 0 0 chr1 187454191 187454232 -9741200 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 9 2015 533 313 85 120 chr1 187454788 187455354 -9740078 - MER63C DNA AcHobo -331 599 54 9 2015 653 292 75 56 chr1 187455687 187455862 -9739570 + L1MA4A LINE L1 5518 5691 -612 9 2015 3874 94 59 15 chr1 187455862 187456404 -9739028 - RMER2 LTR ERV1 -1 566 1 9 2015 653 292 75 56 chr1 187456404 187456641 -9738791 + L1MA4A LINE L1 5692 5938 -365 9 2015 335 247 0 0 chr1 187458500 187458577 -9736855 + ID2 SINE ID 2 78 -5 9 2015 225 0 0 0 chr1 187459311 187459336 -9736096 + (T)n Simple_repeat Simple_repeat 1 25 0 9 2015 320 275 0 0 chr1 187460577 187460657 -9734775 - ID4_ SINE ID -2 81 2 9 2015 869 277 61 31 chr1 187460751 187461012 -9734420 + B4 SINE B4 24 292 0 9 2015 928 243 207 17 chr1 187461545 187461893 -9733539 - MTD LTR MaLR 0 419 6 9 2015 3130 247 46 43 chr1 187461898 187461952 -9733480 + RCHARR1 DNA MER1_type 26 78 -896 9 2015 2268 172 12 7 chr1 187461952 187462368 -9733064 + Lx LINE L1 6237 6654 0 9 2015 3130 247 46 43 chr1 187462368 187462424 -9733008 + RCHARR1 DNA MER1_type 79 123 -851 9 2015 662 164 109 0 chr1 187462424 187462552 -9732880 + B1_Mus1 SINE Alu 5 146 -2 9 2015 3130 247 46 43 chr1 187462552 187463380 -9732052 + RCHARR1 DNA MER1_type 124 968 -6 9 2015 375 315 89 57 chr1 187463730 187463976 -9731456 - MLT2F LTR ERVL -3 660 407 9 2015 180 0 0 0 chr1 187464790 187464810 -9730622 + (T)n Simple_repeat Simple_repeat 1 20 0 9 2015 441 0 0 0 chr1 187466008 187466057 -9729375 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 9 2015 317 82 0 39 chr1 187466544 187466595 -9728837 + RMER2 LTR ERV1 1 49 -518 9 2015 564 246 16 0 chr1 187467154 187467280 -9728152 + ID_B1 SINE B4 2 129 -95 9 2015 444 37 0 0 chr1 187467461 187467515 -9727917 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 2015 191 62 62 0 chr1 187468803 187468835 -9726597 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 9 2015 689 335 68 28 chr1 187468948 187469301 -9726131 - Lx8 LINE L1 -127 7346 6980 9 2015 798 308 89 4 chr1 187471429 187471677 -9723755 + B4A SINE B4 10 278 -14 9 2015 213 121 0 0 chr1 187471692 187471725 -9723707 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 2015 639 226 0 16 chr1 187471755 187471881 -9723551 + B1_Mur2 SINE Alu 1 124 -25 9 2015 522 0 0 0 chr1 187471882 187471940 -9723492 + (GA)n Simple_repeat Simple_repeat 2 59 0 9 2015 189 132 0 0 chr1 187471964 187472002 -9723430 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 9 2015 613 106 19 0 chr1 187472354 187472458 -9722974 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 9 2015 441 54 0 0 chr1 187472458 187472514 -9722918 + (TCTG)n Simple_repeat Simple_repeat 1 56 0 9 2015 1247 79 6 0 chr1 187472515 187472692 -9722740 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 9 2015 834 271 68 64 chr1 187473127 187473342 -9722090 - MTD LTR MaLR -14 405 193 9 2015 533 42 14 0 chr1 187473342 187473414 -9722018 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 2015 834 271 68 64 chr1 187473414 187473509 -9721923 - MTD LTR MaLR -227 192 95 9 2015 1019 268 48 71 chr1 187474374 187474728 -9720704 + MTEa LTR MaLR 27 372 -7 9 2015 641 345 37 16 chr1 187474807 187475049 -9720383 + MLT1H LTR MaLR 37 283 -266 9 2015 215 400 50 0 chr1 187475437 187475537 -9719895 + MER5A DNA MER1_type 64 168 -21 9 2015 728 212 129 64 chr1 187475779 187475981 -9719451 - B3 SINE B2 0 216 2 9 2015 425 306 69 43 chr1 187476271 187476459 -9718973 - MER63A DNA AcHobo -10 200 8 9 2015 577 257 7 0 chr1 187477191 187477327 -9718105 - L1MB1 LINE L1 -5 6163 6027 9 2015 1356 88 5 40 chr1 187478241 187478442 -9716990 - B2_Mm2 SINE B2 -1 194 1 9 2015 22 35 0 0 chr1 187478529 187478558 -9716874 + AT_rich Low_complexity Low_complexity 1 29 0 9 2015 267 330 11 0 chr1 187478590 187478681 -9716751 - RSINE1 SINE B4 -72 93 2 9 2015 552 30 0 0 chr1 187479204 187479270 -9716162 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 9 2015 238 279 181 9 chr1 187479427 187479532 -9715900 + MLT1J1 LTR MaLR 37 159 -285 9 2015 26 30 0 0 chr1 187479745 187479778 -9715654 + AT_rich Low_complexity Low_complexity 1 33 0 9 2015 378 124 34 0 chr1 187480240 187480329 -9715103 + (TG)n Simple_repeat Simple_repeat 1 92 0 9 2015 333 0 0 0 chr1 187480331 187480368 -9715064 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 2015 342 0 0 0 chr1 187480368 187480405 -9715027 + (GA)n Simple_repeat Simple_repeat 2 39 0 9 2015 2454 62 59 0 chr1 187480475 187480782 -9714650 + ORR1A2 LTR MaLR 3 327 0 9 2015 753 273 51 25 chr1 187481166 187481440 -9713992 + B4 SINE B4 5 285 -7 9 2015 25 31 0 0 chr1 187482400 187482432 -9713000 + AT_rich Low_complexity Low_complexity 1 32 0 9 2015 222 265 0 0 chr1 187482432 187482500 -9712932 + (TCCG)n Simple_repeat Simple_repeat 2 69 0 9 2015 236 231 143 36 chr1 187483135 187483247 -9712185 + L1M5 LINE L1 5536 5659 -785 9 2015 276 248 107 19 chr1 187483318 187483421 -9712011 - Lx9 LINE L1 -1000 6644 6533 9 2015 989 312 73 36 chr1 187483420 187483886 -9711546 + Lx9 LINE L1 6966 7448 -196 9 2015 315 167 0 0 chr1 187484062 187484128 -9711304 + CT-rich Low_complexity Low_complexity 2 67 0 9 2015 349 299 148 64 chr1 187484866 187485223 -9710209 - MLT1C LTR MaLR -15 452 66 9 2015 399 41 0 0 chr1 187485359 187485408 -9710024 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 2015 635 278 133 43 chr1 187485410 187485801 -9709631 - L1MC1 LINE L1 -105 6228 5803 9 2015 1149 79 0 0 chr1 187485945 187486085 -9709347 + B1_Mus2 SINE Alu 2 141 -6 9 2015 891 299 18 18 chr1 187486314 187486587 -9708845 + MTE2b LTR MaLR 1 273 -106 9 2015 1032 268 111 12 chr1 187486660 187487003 -9708429 + MTE-int LTR MaLR 43 419 -1161 9 2015 2766 299 65 20 chr1 187487089 187488030 -9707402 + MTE-int LTR MaLR 595 1577 -3 9 2015 963 171 23 0 chr1 187488100 187488276 -9707156 - URR1A DNA MER1_type 0 226 47 9 2015 821 284 21 41 chr1 187488318 187488560 -9706872 + MTEa LTR MaLR 139 375 -4 1 2015 813 258 55 97 chr1 187488902 187489232 -9706200 + MTEa LTR MaLR 60 375 -4 1 2015 438 330 81 49 chr1 187489248 187489618 -9705814 - L1MB4 LINE L1 -146 6034 5653 1 2015 186 216 78 0 chr1 187489719 187489770 -9705662 - MIR SINE MIR -67 141 87 1 2015 781 268 51 43 chr1 187491416 187491673 -9703759 - ORR1D2 LTR MaLR -8 362 104 1 2015 629 227 72 24 chr1 187491684 187491851 -9703581 + B3 SINE B2 41 215 -1 1 2015 394 272 19 0 chr1 187492285 187492388 -9703044 + ORR1D2 LTR MaLR 3 107 -263 1 2015 593 237 111 0 chr1 187492385 187492520 -9702912 - B3 SINE B2 -65 151 2 1 2015 595 303 32 5 chr1 187492534 187492723 -9702709 - B4A SINE B4 -98 194 1 1 2015 257 217 33 0 chr1 187493342 187493402 -9702030 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1 2015 519 202 0 0 chr1 187493404 187493523 -9701909 + (TG)n Simple_repeat Simple_repeat 2 120 0 1 2015 823 254 55 48 chr1 187494616 187494906 -9700526 + B4A SINE B4 1 292 0 1 2015 383 96 0 27 chr1 187495558 187495633 -9699799 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 1 2015 532 310 26 66 chr1 187495646 187495950 -9699482 - B4A SINE B4 0 292 1 1 2015 210 150 0 0 chr1 187497471 187497511 -9697921 + (TTTTTA)n Simple_repeat Simple_repeat 4 43 0 1 2015 870 179 0 0 chr1 187497550 187497911 -9697521 + (TG)n Simple_repeat Simple_repeat 1 361 0 1 2015 308 148 0 18 chr1 187497933 187497988 -9697444 - HAL1-3A_ME LINE L1 -830 2028 1975 1 2015 471 202 0 0 chr1 187497988 187498107 -9697325 + (TG)n Simple_repeat Simple_repeat 2 120 0 1 2015 608 253 96 0 chr1 187498110 187498276 -9697156 - B3A SINE B2 -16 182 1 1 2015 261 232 0 0 chr1 187498906 187498975 -9696457 + CT-rich Low_complexity Low_complexity 3 71 0 1 2015 331 213 126 11 chr1 187499062 187499157 -9696275 - B1_Mur1 SINE Alu -9 140 35 1 2015 1018 130 216 0 chr1 187499389 187499574 -9695858 - URR1A DNA MER1_type -1 225 1 1 2015 769 262 24 14 chr1 187500848 187501061 -9694371 - B3 SINE B2 0 216 2 1 2015 396 0 0 0 chr1 187501090 187501134 -9694298 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 2015 611 260 38 27 chr1 187501634 187501820 -9693612 + B3A SINE B2 7 194 -4 3 2015 349 188 0 0 chr1 187501894 187501958 -9693474 - ID4 SINE ID -4 79 16 4 2015 549 212 0 0 chr1 187502036 187502275 -9693157 + (TG)n Simple_repeat Simple_repeat 1 239 0 5 2015 330 286 22 11 chr1 187502324 187502416 -9693016 - B4A SINE B4 -198 94 2 6 2015 260 267 0 35 chr1 187502630 187502729 -9692703 + MIR SINE MIR 171 268 0 7 2015 224 292 27 14 chr1 187502756 187502829 -9692603 - MER5A DNA MER1_type -35 154 81 8 2015 1005 272 63 46 chr1 187503203 187503569 -9691863 + MTE2a LTR MaLR 7 378 -1 9 2015 551 287 7 0 chr1 187504248 187504384 -9691048 + ID_B1 SINE B4 80 216 -8 1 2015 534 259 23 23 chr1 187504986 187505160 -9690272 + B3A SINE B2 10 183 -15 1 2015 309 89 0 0 chr1 187505232 187505277 -9690155 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 2015 383 264 92 67 chr1 187506042 187506237 -9689195 - Lx8 LINE L1 -2 7471 7272 1 2015 232 256 0 124 chr1 187506689 187506778 -9688654 + B4 SINE B4 97 174 -118 1 2015 746 123 0 8 chr1 187506905 187507036 -9688396 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 2015 730 215 0 0 chr1 187507434 187507564 -9687868 + B1F SINE Alu 3 132 -17 1 2015 325 0 44 0 chr1 187507597 187507642 -9687790 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 2015 300 53 0 0 chr1 187508049 187508087 -9687345 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 2015 181 128 21 21 chr1 187508102 187508150 -9687282 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 2015 1113 259 7 37 chr1 187508188 187508488 -9686944 - B4A SINE B4 0 292 2 2 2015 426 269 17 16 chr1 187509590 187509895 -9685537 + CT-rich Low_complexity Low_complexity 1 305 0 2 2015 430 276 79 40 chr1 187510577 187510754 -9684678 - B4A SINE B4 -19 273 90 2 2015 311 304 105 35 chr1 187510755 187510898 -9684534 - B4A SINE B4 -138 154 2 2 2015 778 229 49 15 chr1 187511100 187511304 -9684128 + B3 SINE B2 6 216 0 2 2015 319 213 90 27 chr1 187511796 187511907 -9683525 - LTR87 LTR ERVL? -93 531 414 2 2015 485 287 8 37 chr1 187513774 187513908 -9681524 + RSINE1 SINE B4 2 131 -34 2 2015 492 18 0 0 chr1 187513933 187513990 -9681442 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 2015 186 43 0 0 chr1 187514955 187514978 -9680454 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 2015 201 224 0 56 chr1 187516334 187516405 -9679027 + T-rich Low_complexity Low_complexity 4 70 0 2 2015 228 185 0 0 chr1 187517023 187517077 -9678355 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 2015 1393 166 105 14 chr1 187517701 187517995 -9677437 + MTC LTR MaLR 101 421 0 3 2015 234 91 0 0 chr1 187521071 187521104 -9674328 + (CAT)n Simple_repeat Simple_repeat 2 34 0 3 2015 1014 177 24 29 chr1 187522377 187522586 -9672846 + URR1B DNA MER1_type 5 212 -13 3 2015 342 0 0 0 chr1 187523909 187523947 -9671485 + (T)n Simple_repeat Simple_repeat 1 38 0 3 2015 3327 46 5 5 chr1 187524310 187524706 -9670726 - MTA_Mm LTR MaLR 0 396 1 3 2015 378 262 124 88 chr1 187526658 187526988 -9668444 - Tigger13a DNA MER2_type 0 771 430 3 2015 36282 89 12 7 chr1 187528319 187534773 -9660659 - L1Md_F2 LINE L1 0 6582 175 3 2015 225 0 0 0 chr1 187536453 187536478 -9658954 + (TCTCTG)n Simple_repeat Simple_repeat 1 25 0 3 2015 755 162 0 7 chr1 187536478 187536621 -9658811 + CT-rich Low_complexity Low_complexity 3 144 0 3 2015 252 321 104 4 chr1 187537432 187537538 -9657894 + PB1D10 SINE Alu 7 111 -16 4 2015 1069 79 43 0 chr1 187537753 187537893 -9657539 - B1_Mus2 SINE Alu 0 147 2 4 2015 642 283 106 4 chr1 187538006 187538251 -9657181 - B4A SINE B4 -22 270 1 4 2015 29 28 0 0 chr1 187539837 187539873 -9655559 + AT_rich Low_complexity Low_complexity 1 36 0 4 2015 793 230 153 43 chr1 187540009 187540116 -9655316 + Lx7 LINE L1 7313 7420 -276 4 2015 501 17 0 0 chr1 187540116 187540174 -9655258 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 2015 793 230 153 43 chr1 187540174 187540412 -9655020 + Lx7 LINE L1 7421 7695 -1 4 2015 733 246 35 85 chr1 187541098 187541265 -9654167 + B3A SINE B2 2 167 -31 4 2015 411 21 0 0 chr1 187541265 187541313 -9654119 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 2015 510 246 35 85 chr1 187541313 187541345 -9654087 + B2_Mm2 SINE B2 160 191 -4 4 2015 198 91 0 0 chr1 187541789 187541822 -9653610 + (A)n Simple_repeat Simple_repeat 1 33 0 4 2015 1953 113 137 58 chr1 187542326 187542691 -9652741 - ORR1B1 LTR MaLR 0 394 1 4 2015 301 214 55 22 chr1 187542731 187542822 -9652610 - L1ME3B LINE L1 -94 6146 6053 5 2015 263 222 0 0 chr1 187542922 187542976 -9652456 + C-rich Low_complexity Low_complexity 1 54 0 5 2015 430 294 9 0 chr1 187543544 187543653 -9651779 + PB1D10 SINE Alu 3 112 -5 5 2015 220 198 289 24 chr1 187544017 187544100 -9651332 - PB1D7 SINE Alu 0 120 16 5 2015 905 272 182 14 chr1 187544237 187544580 -9650852 - Lx8 LINE L1 -2 7471 7085 5 2015 1338 47 0 0 chr1 187544580 187544795 -9650637 + (ATGGTG)n Simple_repeat Simple_repeat 1 215 0 5 2015 905 272 182 14 chr1 187544795 187544882 -9650550 - Lx8 LINE L1 -389 7084 6970 5 2015 321 336 35 14 chr1 187545278 187545420 -9650012 - MLT1F LTR MaLR -11 537 393 5 2015 273 343 72 17 chr1 187545868 187546049 -9649383 + LTR16A LTR ERVL 13 203 -248 5 2015 3463 220 106 9 chr1 187546428 187546556 -9648876 - Lx9 LINE L1 -5 7639 7477 5 2015 279 0 0 0 chr1 187546556 187546587 -9648845 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 2015 3463 220 106 9 chr1 187546587 187547308 -9648124 - Lx9 LINE L1 -168 7476 6708 5 2015 843 303 60 41 chr1 187547990 187548380 -9647052 - MTE2a LTR MaLR -14 405 18 6 2015 2627 159 35 0 chr1 187548380 187548808 -9646624 - Lx6 LINE L1 -583 6877 6435 6 2015 2133 225 19 2 chr1 187548792 187549202 -9646230 + Lx6 LINE L1 6872 7288 -172 6 2015 310 287 39 19 chr1 187549262 187549365 -9646067 + PB1D7 SINE Alu 13 117 -3 6 2015 498 298 63 41 chr1 187549386 187549678 -9645754 + L1ME1 LINE L1 5536 5829 -515 6 2015 456 324 34 71 chr1 187550357 187550476 -9644956 + B4A SINE B4 5 120 -172 6 2015 2607 146 13 18 chr1 187550476 187550931 -9644501 - RLTR11B LTR ERVK 0 453 1 6 2015 456 324 34 71 chr1 187550931 187551050 -9644382 + B4A SINE B4 121 234 -58 6 2015 396 40 0 0 chr1 187551071 187551121 -9644311 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 2015 307 296 68 82 chr1 187551965 187552171 -9643261 + L2 LINE L2 2868 3070 -349 6 2015 251 226 38 0 chr1 187552842 187552895 -9642537 + RLTR14-int LTR ERV1 752 806 -4511 6 2015 449 310 67 33 chr1 187553812 187553992 -9641440 + B4 SINE B4 104 289 -3 6 2015 270 311 30 33 chr1 187554027 187554147 -9641285 - MIRc SINE MIR -59 149 33 7 2015 1011 161 0 0 chr1 187554387 187554567 -9640865 + CT-rich Low_complexity Low_complexity 1 180 0 7 2015 354 107 0 0 chr1 187554568 187554624 -9640808 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 7 2015 882 76 0 0 chr1 187554624 187554743 -9640689 + (TTTC)n Simple_repeat Simple_repeat 4 122 0 7 2015 195 42 0 0 chr1 187556025 187556049 -9639383 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 7 2015 4795 195 107 6 chr1 187556049 187557055 -9638377 - Lx5 LINE L1 -16 7034 5927 7 2015 262 265 12 0 chr1 187557661 187557744 -9637688 - MTEa LTR MaLR -2 377 294 7 2015 624 277 21 0 chr1 187557749 187557890 -9637542 + RSINE1 SINE B4 3 146 -19 7 2015 456 117 0 0 chr1 187557905 187557982 -9637450 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 2015 22 35 0 0 chr1 187557983 187558012 -9637420 + AT_rich Low_complexity Low_complexity 1 29 0 7 2015 812 172 155 49 chr1 187558811 187559037 -9636395 - Lx7 LINE L1 0 7696 7447 8 2015 279 0 0 0 chr1 187559086 187559117 -9636315 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 2015 660 189 0 0 chr1 187559117 187559283 -9636149 + GA-rich Low_complexity Low_complexity 10 175 0 8 2015 456 191 19 31 chr1 187559293 187559552 -9635880 + (CAGAGA)n Simple_repeat Simple_repeat 1 255 0 8 2015 207 0 0 0 chr1 187559553 187559576 -9635856 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 2015 352 0 20 20 chr1 187559704 187559753 -9635679 + (CAAAAA)n Simple_repeat Simple_repeat 3 51 0 8 2015 236 152 0 0 chr1 187559851 187559884 -9635548 - Lx7 LINE L1 -421 7275 7243 8 2015 649 273 19 107 chr1 187559898 187560103 -9635329 - B3A SINE B2 -6 189 3 8 2015 789 133 30 0 chr1 187560246 187560381 -9635051 - B1_Mur4 SINE Alu -2 148 10 8 2015 459 232 7 66 chr1 187560381 187560398 -9635034 - ID_B1 SINE B4 -2 222 80 8 2015 267 290 0 28 chr1 187561267 187561338 -9634094 + MER81 DNA AcHobo 46 114 0 8 2015 795 238 54 5 chr1 187562022 187562042 -9633390 - B3 SINE B2 -19 197 178 9 2015 342 0 0 0 chr1 187562042 187562080 -9633352 + (TATG)n Simple_repeat Simple_repeat 4 41 0 9 2015 795 238 54 5 chr1 187562080 187562245 -9633187 - B3 SINE B2 -39 177 3 9 2015 394 336 95 35 chr1 187563052 187563588 -9631844 - L1MEf LINE L1 -4870 1330 763 9 2015 365 290 9 9 chr1 187563874 187563982 -9631450 + PB1D10 SINE Alu 2 109 -8 9 2016 1278 61 5 16 chr1 187564120 187564304 -9631128 + B2_Mm2 SINE B2 6 187 -8 9 2016 383 276 22 7 chr1 187564425 187564560 -9630872 + B4A SINE B4 115 251 -41 9 2016 474 101 0 0 chr1 187564624 187564693 -9630739 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 2016 198 336 87 32 chr1 187565838 187565964 -9629468 - MER5B DNA MER1_type -3 175 43 9 2016 391 257 99 68 chr1 187566059 187566251 -9629181 - B3A SINE B2 0 198 1 9 2016 1179 269 69 45 chr1 187566572 187566993 -9628439 - BGLII_B LTR ERVK -10 431 1 9 2016 5108 160 142 17 chr1 187566991 187567783 -9627649 + RMER12 LTR ERVK 4 846 -476 1 2016 324 48 0 0 chr1 187567783 187567825 -9627607 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 2016 5108 160 142 17 chr1 187567825 187568204 -9627228 + RMER12 LTR ERVK 847 1322 0 1 2016 213 319 83 48 chr1 187569430 187569575 -9625857 - MIR SINE MIR -34 228 79 1 2016 432 295 112 21 chr1 187570475 187570662 -9624770 - MLT-int LTR MaLR -137 1598 1395 1 2016 990 264 40 106 chr1 187571398 187571775 -9623657 - ORR1E LTR MaLR 0 359 8 1 2016 233 274 30 131 chr1 187571839 187572007 -9623425 - MLT1A0 LTR MaLR -188 177 27 1 2016 263 228 0 0 chr1 187572035 187572090 -9623342 + L1MC3 LINE L1 6806 6854 -931 1 2016 321 231 0 0 chr1 187572115 187572236 -9623196 + (CCAA)n Simple_repeat Simple_repeat 4 124 0 1 2016 398 53 18 0 chr1 187572257 187572314 -9623118 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 1 2016 447 92 0 0 chr1 187572431 187572496 -9622936 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 2016 1545 302 22 25 chr1 187572514 187573064 -9622368 + L1MC3 LINE L1 6984 7531 -254 1 2016 251 161 71 0 chr1 187573384 187573440 -9621992 - B3 SINE B2 -156 60 1 1 2016 1517 101 13 13 chr1 187573604 187573835 -9621597 - Lx3C LINE L1 -963 6013 5783 1 2016 22 35 0 0 chr1 187573835 187573864 -9621568 + AT_rich Low_complexity Low_complexity 1 29 0 1 2016 1206 88 0 23 chr1 187574169 187574470 -9620962 + (TCCCC)n Simple_repeat Simple_repeat 1 294 0 1 2016 6773 81 13 2 chr1 187574601 187575629 -9619803 - L1VL2 LINE L1 -2459 1156 116 1 2016 351 54 6 2 chr1 187575650 187575699 -9619733 - Lx3C LINE L1 -346 5833 5753 1 2016 235 125 29 86 chr1 187575944 187576014 -9619418 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 1 2016 297 68 0 0 chr1 187576666 187576710 -9618722 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 2016 641 274 8 1 chr1 187576710 187576874 -9618558 - B3A SINE B2 -52 164 1 1 2016 537 215 28 43 chr1 187576973 187577114 -9618318 - B4A SINE B4 -19 273 135 1 2016 288 0 0 0 chr1 187577256 187577288 -9618144 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 2016 665 206 28 35 chr1 187577310 187577451 -9617981 - B1_Mur2 SINE Alu -1 148 9 1 2016 509 234 97 42 chr1 187579266 187579431 -9616001 - B3A SINE B2 -16 182 9 1 2016 677 316 23 83 chr1 187580609 187580995 -9614437 + MT2A LTR ERVL 1 363 -170 1 2016 231 191 191 0 chr1 187580984 187581047 -9614385 + MLT2B3 LTR ERVL 480 554 0 1 2016 1344 131 13 51 chr1 187582506 187582740 -9612692 - URR1A DNA MER1_type 0 226 2 1 2016 228 35 0 0 chr1 187583586 187583615 -9611817 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1 2016 1798 100 15 0 chr1 187583615 187583886 -9611546 - ORR1A2 LTR MaLR -52 275 1 1 2016 4438 130 32 3 chr1 187583886 187584315 -9611117 - ORR1A2-int LTR MaLR 0 1963 1528 1 2016 297 0 0 0 chr1 187584315 187584348 -9611084 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 2016 4438 130 32 3 chr1 187584348 187584675 -9610757 - ORR1A2-int LTR MaLR -436 1527 1186 1 2016 707 325 37 60 chr1 187585174 187585472 -9609960 + B4A SINE B4 2 292 0 1 2016 811 219 5 0 chr1 187585472 187585887 -9609545 + (CA)n Simple_repeat Simple_repeat 1 417 0 1 2016 342 161 44 9 chr1 187586922 187587035 -9608397 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 1 2016 422 233 12 5 chr1 187587100 187587197 -9608235 - ORR1E LTR MaLR -298 96 2 1 2016 303 326 55 55 chr1 187587306 187587488 -9607944 + RMER30 DNA MER1_type 2 183 -19 1 2016 471 244 0 0 chr1 187587772 187587861 -9607571 + T-rich Low_complexity Low_complexity 88 176 0 1 2016 1208 47 0 0 chr1 187587861 187588009 -9607423 - B1_Mus1 SINE Alu 0 148 1 1 2016 471 244 0 0 chr1 187588009 187588095 -9607337 + T-rich Low_complexity Low_complexity 2 87 0 1 2016 242 325 12 24 chr1 187588985 187589067 -9606365 + Zaphod2 DNA Tip100 2 82 -3442 1 2016 227 341 78 21 chr1 187589571 187589712 -9605720 - MIRc SINE MIR -20 248 100 1 2016 1169 205 108 30 chr1 187589892 187590224 -9605208 - ORR1E LTR MaLR 0 359 2 1 2016 1977 117 52 3 chr1 187593307 187593633 -9601799 + Lx2 LINE L1 6656 6997 0 1 2016 281 231 48 136 chr1 187593763 187593776 -9601656 + MT2B LTR ERVL 145 146 -455 1 2016 719 214 0 40 chr1 187593776 187593927 -9601505 + B1_Mur4 SINE Alu 1 145 -5 1 2016 351 0 0 0 chr1 187593985 187594024 -9601408 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 2016 197 352 37 28 chr1 187595106 187595214 -9600218 - MIRb SINE MIR -118 150 42 1 2016 426 39 0 0 chr1 187595381 187595433 -9599999 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 2016 419 289 108 54 chr1 187595967 187596222 -9599210 + B4A SINE B4 1 269 -23 1 2016 465 19 0 0 chr1 187596222 187596276 -9599156 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 2016 283 214 11 11 chr1 187596293 187596383 -9599049 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 1 2016 646 246 114 36 chr1 187598399 187598618 -9596814 + B4A SINE B4 1 236 -56 1 2016 315 0 0 0 chr1 187599254 187599289 -9596143 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 2016 651 81 0 0 chr1 187599289 187599387 -9596045 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 2016 570 255 100 29 chr1 187599703 187599873 -9595559 - B3A SINE B2 -16 182 1 1 2016 403 283 27 68 chr1 187600291 187600419 -9595013 + ID_B1 SINE B4 83 209 -15 1 2016 6158 114 39 5 chr1 187600419 187601342 -9594090 - RMER17B LTR ERVK -4 954 1 1 2016 403 283 27 68 chr1 187601342 187601361 -9594071 + ID_B1 SINE B4 210 224 0 1 2016 326 340 61 12 chr1 187601693 187601857 -9593575 + B4A SINE B4 1 172 -120 1 2016 452 48 0 16 chr1 187601948 187602012 -9593420 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 2016 490 290 22 33 chr1 187602232 187602414 -9593018 - B4 SINE B4 -57 235 56 1 2016 931 258 30 4 chr1 187603276 187603510 -9591922 + Lx7 LINE L1 5589 5828 -1868 1 2016 990 118 0 0 chr1 187604484 187604636 -9590796 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 1 2016 1161 49 21 0 chr1 187604752 187604896 -9590536 - B1_Mus1 SINE Alu 0 148 2 1 2016 433 258 134 108 chr1 187604983 187605261 -9590171 + ORR1E LTR MaLR 89 370 0 1 2016 245 309 43 0 chr1 187605821 187605915 -9589517 - PB1 SINE Alu -7 120 23 1 2016 902 151 167 0 chr1 187606215 187606407 -9589025 - URR1A DNA MER1_type -2 224 1 1 2016 3244 39 39 0 chr1 187606507 187606888 -9588544 + MTA_Mm LTR MaLR 1 396 0 1 2016 21 0 0 0 chr1 187607205 187607226 -9588206 + AT_rich Low_complexity Low_complexity 1 21 0 1 2016 430 278 7 93 chr1 187608255 187608394 -9587038 - B4 SINE B4 -165 127 1 1 2016 241 82 0 39 chr1 187609655 187609706 -9585726 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 1 2016 519 168 144 0 chr1 187609823 187609948 -9585484 + B1_Mur2 SINE Alu 5 147 -2 1 2016 293 298 79 37 chr1 187610081 187610245 -9585187 + B4A SINE B4 6 176 -116 1 2016 1011 104 0 0 chr1 187612311 187612475 -9582957 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 2016 771 292 49 11 chr1 187612478 187612741 -9582691 - B4 SINE B4 -19 273 1 1 2016 491 339 49 51 chr1 187613818 187614247 -9581185 + MT2A LTR ERVL 3 430 -103 1 2016 1910 271 58 21 chr1 187614343 187614999 -9580433 + L1MA6 LINE L1 5582 6261 -39 1 2016 522 130 0 0 chr1 187615412 187615520 -9579912 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 2016 315 0 0 0 chr1 187615520 187615555 -9579877 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 2016 515 202 40 0 chr1 187616007 187616152 -9579280 - MTE2a LTR MaLR 0 379 227 1 2016 1860 156 21 6 chr1 187616167 187616503 -9578929 + ORR1A1 LTR MaLR 6 346 0 1 2016 484 315 68 53 chr1 187616503 187616780 -9578652 - MTE2a LTR MaLR -129 250 1 1 2016 226 276 121 0 chr1 187617572 187617688 -9577744 - RMER15 LTR ERVL -14 561 432 1 2016 417 208 0 17 chr1 187618759 187618940 -9576492 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 2016 225 0 0 0 chr1 187618951 187618976 -9576456 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 2016 534 290 47 52 chr1 187619717 187619910 -9575522 - B3A SINE B2 -6 192 1 1 2016 21 0 0 0 chr1 187619923 187619944 -9575488 + AT_rich Low_complexity Low_complexity 1 21 0 1 2016 198 0 0 0 chr1 187620293 187620315 -9575117 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1 2016 247 120 59 24 chr1 187621358 187621443 -9573989 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 1 2016 339 218 148 82 chr1 187622510 187622645 -9572787 + LTR48 LTR ERV1 1 144 -643 1 2016 407 262 96 46 chr1 187623240 187623442 -9571990 + MTD LTR MaLR 4 180 -199 1 2016 295 206 68 14 chr1 187623453 187623527 -9571905 + MTD LTR MaLR 282 359 -11 1 2016 400 227 33 8 chr1 187623870 187623990 -9571442 + LTR37A LTR ERV1 276 398 -28 1 2016 399 132 0 0 chr1 187624339 187624407 -9571025 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 2016 285 326 55 93 chr1 187624407 187624664 -9570768 + B4 SINE B4 28 274 -18 1 2016 447 209 0 0 chr1 187624693 187624798 -9570634 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 2016 296 266 79 79 chr1 187625770 187626079 -9569353 + MLT1A0 LTR MaLR 46 408 0 1 2016 630 223 29 7 chr1 187626129 187626269 -9569163 - B1_Mur1 SINE Alu -2 147 5 1 2016 195 113 18 36 chr1 187626575 187626630 -9568802 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 2016 969 141 44 176 chr1 187627852 187628102 -9567330 + Lx3C LINE L1 6758 6974 -2 1 2016 24 77 0 0 chr1 187628103 187628155 -9567277 + AT_rich Low_complexity Low_complexity 1 52 0 1 2016 878 246 46 129 chr1 187628688 187629099 -9566333 + MTE2a LTR MaLR 1 377 -2 1 2016 282 339 66 84 chr1 187630194 187630526 -9564906 - Tigger7 DNA MER2_type -3 2488 2163 1 2016 306 328 133 0 chr1 187630545 187630673 -9564759 - Tigger7 DNA MER2_type -2186 305 161 1 2016 315 0 0 0 chr1 187630844 187630879 -9564553 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 2016 499 319 137 3 chr1 187632243 187632580 -9562852 - L1MC4a LINE L1 -1064 6818 6437 1 2016 477 0 0 0 chr1 187632976 187633029 -9562403 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 2016 305 312 156 31 chr1 187633189 187633477 -9561955 - L1MC4a LINE L1 -455 5724 5401 1 2016 354 300 90 15 chr1 187633520 187633787 -9561645 - L1MC4a LINE L1 -827 5319 5033 1 2016 22 35 0 0 chr1 187633896 187633925 -9561507 + AT_rich Low_complexity Low_complexity 1 29 0 2 2016 277 333 67 15 chr1 187634330 187634464 -9560968 + MLT1E2 LTR MaLR 350 490 -137 2 2016 326 259 51 8 chr1 187634740 187634857 -9560575 - L1MC LINE L1 -2323 3823 3702 2 2016 428 292 153 19 chr1 187634916 187635373 -9560059 - L1MC4a LINE L1 -1468 4678 4143 1 2016 202 250 13 38 chr1 187635409 187635488 -9559944 + CT-rich Low_complexity Low_complexity 1 77 0 2 2016 450 211 0 0 chr1 187635516 187635625 -9559807 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 2016 2860 174 56 17 chr1 187635650 187636240 -9559192 + RMER13A LTR ERVK 1 613 -247 2 2016 641 337 14 4 chr1 187636240 187636520 -9558912 - L1MA5A LINE L1 -422 5875 5593 2 2016 181 170 37 19 chr1 187636626 187636680 -9558752 + T-rich Low_complexity Low_complexity 1 55 0 2 2016 1289 251 98 42 chr1 187636843 187637342 -9558090 - Tigger1 DNA MER2_type 0 2418 1892 2 2016 229 218 273 0 chr1 187637366 187637476 -9557956 - B1F SINE Alu -8 141 2 2 2016 236 296 100 18 chr1 187637491 187637601 -9557831 - Tigger1 DNA MER2_type -528 1890 1772 2 2016 950 291 36 13 chr1 187637864 187638167 -9557265 - Lx8 LINE L1 -10 7463 7154 2 2016 22 0 0 0 chr1 187638191 187638213 -9557219 + AT_rich Low_complexity Low_complexity 1 22 0 2 2016 499 304 54 8 chr1 187638241 187638432 -9557000 - B3A SINE B2 -13 203 10 2 2016 362 277 49 25 chr1 187638440 187638562 -9556870 - Tigger1 DNA MER2_type -822 1596 1472 2 2016 181 210 32 0 chr1 187638564 187638626 -9556806 + CT-rich Low_complexity Low_complexity 3 66 0 2 2016 414 0 0 0 chr1 187638634 187638680 -9556752 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 2016 220 266 62 0 chr1 187638686 187638750 -9556682 - PB1D9 SINE Alu -9 111 44 2 2016 566 255 32 19 chr1 187638886 187639042 -9556390 - B3 SINE B2 -13 203 46 2 2016 405 293 109 36 chr1 187639098 187639346 -9556086 - Tigger1 DNA MER2_type -996 1422 1157 2 2016 966 283 184 39 chr1 187639372 187640305 -9555127 - Tigger1 DNA MER2_type -1349 1069 1 2 2016 363 297 44 31 chr1 187640395 187640555 -9554877 - RSINE1 SINE B4 0 165 4 2 2016 304 333 94 52 chr1 187640559 187640683 -9554749 - L1MC LINE L1 -2332 3814 3692 2 2016 623 266 25 50 chr1 187640683 187640885 -9554547 - B3A SINE B2 -1 197 1 2 2016 437 310 115 26 chr1 187640885 187641280 -9554152 - L1MC LINE L1 -2455 3691 3273 2 2016 414 114 0 0 chr1 187644004 187644074 -9551358 + (T)n Simple_repeat Simple_repeat 1 70 0 2 2016 201 162 0 0 chr1 187644281 187644318 -9551114 + A-rich Low_complexity Low_complexity 1 37 0 2 2016 359 196 20 0 chr1 187644411 187644513 -9550919 + (CATG)n Simple_repeat Simple_repeat 4 107 0 2 2016 502 232 0 9 chr1 187644542 187644655 -9550777 - PB1D10 SINE Alu -1 116 5 2 2016 755 282 66 74 chr1 187647646 187648121 -9547311 + MLT1H2 LTR MaLR 86 544 -5 2 2016 470 332 57 39 chr1 187648585 187648920 -9546512 - L1ME1 LINE L1 -6 6173 5833 2 2016 345 317 35 21 chr1 187649019 187649164 -9546268 - B1F SINE Alu -1 148 2 2 2016 1471 275 36 11 chr1 187650284 187650754 -9544678 - Lx8 LINE L1 -6 7467 6986 2 2016 2632 77 34 23 chr1 187650837 187651221 -9544211 + MTB_Mm LTR MaLR 1 388 -19 2 2016 1424 332 72 80 chr1 187651357 187653546 -9541886 - MMERGLN-int LTR ERV1 -2397 5159 2987 2 2016 297 321 0 0 chr1 187653829 187653935 -9541497 - RLTR6-int LTR ERV1 -6312 1466 1361 2 2016 260 288 12 12 chr1 187654218 187654299 -9541133 - RLTR6-int LTR ERV1 -6823 778 698 2 2016 206 0 69 0 chr1 187654556 187654585 -9540847 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 2 2016 1170 128 0 6 chr1 187654937 187655118 -9540314 - RLTR23 LTR ERV1 0 430 251 2 2016 2955 40 3 3 chr1 187655119 187655499 -9539933 + MTA_Mm LTR MaLR 17 396 0 2 2016 254 219 25 76 chr1 187655499 187655578 -9539854 - RLTR23 LTR ERV1 -177 253 179 2 2016 512 105 163 0 chr1 187655606 187655692 -9539740 - RLTR23 LTR ERV1 -330 100 1 2 2016 225 117 16 32 chr1 187656414 187656476 -9538956 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 2016 255 305 0 50 chr1 187656566 187656666 -9538766 - B4 SINE B4 -195 97 3 2 2016 612 292 0 29 chr1 187656672 187656845 -9538587 + B4 SINE B4 98 265 -27 2 2016 1097 112 0 4 chr1 187658758 187659018 -9536414 + (TG)n Simple_repeat Simple_repeat 1 258 0 2 2016 326 312 56 71 chr1 187659053 187659305 -9536127 - B4A SINE B4 -31 261 14 2 2016 252 0 0 0 chr1 187659427 187659455 -9535977 + (T)n Simple_repeat Simple_repeat 1 28 0 2 2016 652 312 80 36 chr1 187660075 187660351 -9535081 + B4 SINE B4 3 290 -2 2 2016 380 262 36 36 chr1 187661615 187661726 -9533706 + PB1D10 SINE Alu 5 115 -2 2 2016 1409 275 119 31 chr1 187664108 187664622 -9530810 + Lx8 LINE L1 6915 7473 0 2 2016 411 275 49 76 chr1 187664647 187664832 -9530600 + Tigger7 DNA MER2_type 428 607 -1884 2 2016 277 262 128 70 chr1 187666145 187666317 -9529115 + B3A SINE B2 1 182 -16 2 2016 225 283 52 17 chr1 187666503 187666618 -9528814 + L1M4b LINE L1 1614 1732 -5602 2 2016 442 180 0 43 chr1 187666930 187667023 -9528409 + 5S rRNA rRNA 2 90 -31 2 2016 939 163 78 16 chr1 187667201 187667394 -9528038 + B3 SINE B2 1 205 -11 2 2016 3561 20 2 0 chr1 187667520 187667915 -9527517 + MTA_Mm LTR MaLR 1 396 0 2 2016 372 359 14 32 chr1 187668107 187668326 -9527106 - B4A SINE B4 -61 231 17 2 2016 296 230 23 0 chr1 187668939 187669026 -9526406 + (CATA)n Simple_repeat Simple_repeat 2 90 0 2 2016 360 148 0 0 chr1 187669869 187669930 -9525502 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 2 2016 27 0 0 0 chr1 187669948 187669975 -9525457 + AT_rich Low_complexity Low_complexity 1 27 0 2 2016 459 245 0 78 chr1 187669980 187670095 -9525337 - RSINE1 SINE B4 -3 162 57 2 2016 677 234 12 37 chr1 187670492 187670656 -9524776 + RSINE1 SINE B4 6 165 0 2 2016 206 128 0 25 chr1 187671378 187671418 -9524014 + CT-rich Low_complexity Low_complexity 1 39 0 2 2016 213 39 0 0 chr1 187676064 187676090 -9519342 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 2016 784 202 109 26 chr1 187676091 187676284 -9519148 - Lx5 LINE L1 -20 7030 6822 2 2016 235 97 0 0 chr1 187676542 187676573 -9518859 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 2 2016 924 128 6 22 chr1 187676573 187676719 -9518713 + polypyrimidine Low_complexity Low_complexity 38 180 0 2 2016 1005 101 30 0 chr1 187676719 187676887 -9518545 + (TTTCC)n Simple_repeat Simple_repeat 2 174 0 2 2016 924 128 6 22 chr1 187676887 187676923 -9518509 + polypyrimidine Low_complexity Low_complexity 2 37 0 2 2016 910 228 51 8 chr1 187677586 187677820 -9517612 - RMER19A LTR ERVK -2 735 492 2 2016 602 168 13 38 chr1 187678469 187678705 -9516727 + CT-rich Low_complexity Low_complexity 1 229 0 2 2016 376 365 84 16 chr1 187678722 187679047 -9516385 - L1MB5 LINE L1 -33 6141 5794 2 2016 627 26 0 0 chr1 187679438 187679515 -9515917 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 2016 648 140 0 0 chr1 187679527 187679634 -9515798 + (TA)n Simple_repeat Simple_repeat 2 108 0 2 2016 351 299 0 0 chr1 187679637 187679744 -9515688 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 2016 809 250 6 0 chr1 187679886 187680054 -9515378 + B3A SINE B2 1 169 -29 2 2016 1022 245 31 99 chr1 187680834 187681219 -9514213 + ORR1E LTR MaLR 1 359 0 2 2016 710 83 0 8 chr1 187681848 187681969 -9513463 + (CTTTG)n Simple_repeat Simple_repeat 2 121 0 2 2016 525 306 71 5 chr1 187682000 187682197 -9513235 - MER20 DNA MER1_type -9 210 1 2 2016 263 375 51 14 chr1 187682268 187682406 -9513026 - MER63D DNA AcHobo -648 413 271 2 2016 886 239 20 10 chr1 187682619 187682818 -9512614 + B3 SINE B2 9 209 -7 2 2016 661 251 54 45 chr1 187683571 187683792 -9511640 + ID_B1 SINE B4 2 224 0 2 2016 832 184 7 7 chr1 187684359 187684512 -9510920 + URR1B DNA MER1_type 1 153 -72 2 2016 1335 48 0 0 chr1 187684536 187684703 -9510729 + (TC)n Simple_repeat Simple_repeat 1 167 0 2 2016 216 0 0 0 chr1 187684703 187684726 -9510706 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 2016 27 0 0 0 chr1 187686254 187686281 -9509151 + AT_rich Low_complexity Low_complexity 1 27 0 2 2016 225 0 0 0 chr1 187686387 187686412 -9509020 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 2016 450 127 0 0 chr1 187686413 187686484 -9508948 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 2016 360 0 0 0 chr1 187687423 187687463 -9507969 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 2016 1468 234 77 22 chr1 187689316 187689679 -9505753 + Lx9 LINE L1 7091 7473 -171 2 2016 204 135 0 0 chr1 187689743 187689780 -9505652 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 2016 378 290 0 36 chr1 187689982 187690093 -9505339 + LFSINE_Vert SINE SINE 139 245 -214 2 2016 254 302 36 58 chr1 187690142 187690279 -9505153 - Tigger16b DNA Tigger -1 336 203 2 2016 579 211 18 0 chr1 187691307 187691416 -9504016 + B3A SINE B2 5 115 -83 2 2016 342 0 0 0 chr1 187691437 187691475 -9503957 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 2016 27 0 0 0 chr1 187691503 187691530 -9503902 + AT_rich Low_complexity Low_complexity 1 27 0 2 2016 318 269 0 37 chr1 187691962 187692043 -9503389 + ID4 SINE ID 4 81 -2 2 2016 531 294 58 62 chr1 187692056 187692299 -9503133 + B4 SINE B4 7 248 -44 2 2016 342 0 0 0 chr1 187693176 187693214 -9502218 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 2016 400 299 54 12 chr1 187693317 187693483 -9501949 - B4A SINE B4 -117 175 3 2 2016 485 324 34 14 chr1 187694096 187694303 -9501129 - LTR88b LTR Gypsy? -617 220 10 2 2017 490 267 67 94 chr1 187695757 187695906 -9499526 - ID_B1 SINE B4 -48 244 96 2 2017 465 66 0 0 chr1 187695910 187695971 -9499461 + (CAA)n Simple_repeat Simple_repeat 1 61 0 2 2017 527 309 100 95 chr1 187696034 187696485 -9498947 - LTR40a LTR ERVL -9 510 1 2 2017 291 28 0 0 chr1 187696529 187696565 -9498867 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 2017 429 289 154 20 chr1 187696622 187696869 -9498563 - B4A SINE B4 -12 280 1 2 2017 4088 31 48 0 chr1 187697222 187697702 -9497730 - L1Md_T LINE L1 -1 6581 6079 2 2017 5369 19 0 0 chr1 187697702 187698512 -9496920 + L1Md_T LINE L1 5280 6089 -493 2 2017 280 111 69 0 chr1 187698958 187699030 -9496402 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 2017 658 313 27 37 chr1 187699032 187699242 -9496190 - B4A SINE B4 0 292 91 3 2017 297 0 0 0 chr1 187699242 187699275 -9496157 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 2017 658 313 27 37 chr1 187699275 187699359 -9496073 - B4A SINE B4 -202 90 3 3 2017 200 139 0 27 chr1 187700086 187700123 -9495309 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 2017 406 172 23 11 chr1 187700141 187700229 -9495203 - B4A SINE B4 -203 89 1 3 2017 370 262 46 9 chr1 187700246 187700354 -9495078 - B1F SINE Alu -9 140 29 3 2017 363 369 43 23 chr1 187700372 187700672 -9494760 + L1M5 LINE L1 4721 5026 -1120 3 2017 281 286 0 0 chr1 187700771 187700841 -9494591 - ID4_ SINE ID -3 80 11 3 2017 666 255 142 12 chr1 187701041 187701391 -9494041 + L1M5 LINE L1 5321 5709 -465 3 2017 29 70 0 0 chr1 187701623 187701680 -9493752 + AT_rich Low_complexity Low_complexity 1 57 0 3 2017 207 0 0 0 chr1 187702625 187702648 -9492784 + (T)n Simple_repeat Simple_repeat 1 23 0 3 2017 296 270 0 22 chr1 187703326 187703417 -9492015 + A-rich Low_complexity Low_complexity 5 93 0 3 2017 585 0 0 0 chr1 187704659 187704724 -9490708 + (CATCT)n Simple_repeat Simple_repeat 4 68 0 3 2017 1093 264 91 22 chr1 187705381 187705841 -9489591 + L1M5 LINE L1 4788 5279 -867 3 2017 201 39 0 0 chr1 187705954 187705980 -9489452 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 3 2017 273 251 205 0 chr1 187706110 187706231 -9489201 + L1M5 LINE L1 5518 5659 -514 3 2017 1130 240 40 7 chr1 187706279 187706556 -9488876 + B4 SINE B4 1 286 -6 3 2017 309 298 158 33 chr1 187706566 187706750 -9488682 + L1M5 LINE L1 5643 5849 -391 3 2017 214 50 50 0 chr1 187708245 187708285 -9487147 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 3 2017 441 0 0 0 chr1 187709571 187709620 -9485812 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 2017 929 286 43 7 chr1 187709648 187709930 -9485502 - B4A SINE B4 0 292 1 3 2017 233 195 70 47 chr1 187710263 187710349 -9485083 + ID_B1 SINE B4 121 208 -16 3 2017 230 235 77 19 chr1 187710349 187710367 -9485065 + B1F1 SINE Alu 40 149 0 3 2017 417 103 0 0 chr1 187710431 187710499 -9484933 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 2017 1154 240 32 32 chr1 187711580 187711920 -9483512 + L1_Rod LINE L1 16 355 -6817 3 2017 8534 45 0 2 chr1 187712193 187713942 -9481490 - L1Md_F3 LINE L1 -13 6571 4826 3 2017 207 0 0 0 chr1 187715102 187715125 -9480307 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 2017 845 342 48 30 chr1 187716690 187717063 -9478369 + MER70B LTR ERVL 7 386 -192 3 2017 235 355 53 77 chr1 187718415 187718662 -9476770 - L3 LINE CR1 -94 4395 4155 3 2017 3693 204 79 6 chr1 187718753 187719672 -9475760 + Lx9 LINE L1 6628 7644 0 3 2017 279 79 0 0 chr1 187719678 187719716 -9475716 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 3 2017 949 119 12 0 chr1 187719745 187719905 -9475527 + (GAA)n Simple_repeat Simple_repeat 2 163 0 3 2017 423 102 0 0 chr1 187720752 187720811 -9474621 + PB1D10 SINE Alu 45 103 -14 3 2017 517 213 198 14 chr1 187721936 187722089 -9473343 + B3 SINE B2 50 216 0 3 2017 190 206 0 0 chr1 187722121 187722155 -9473277 + L2c LINE L2 3282 3315 -72 3 2017 276 292 11 0 chr1 187722464 187722553 -9472879 - MER121 Unknown Unknown -203 209 120 3 2017 1201 111 16 27 chr1 187723142 187723327 -9472105 - B2_Mm2 SINE B2 -10 185 3 3 2017 785 212 35 55 chr1 187724256 187724456 -9470976 - Lx8 LINE L1 -132 7341 7146 3 2017 4284 88 8 5 chr1 187724507 187725098 -9470334 + L1_Mus3 LINE L1 6046 6638 0 3 2017 3851 152 135 9 chr1 187725575 187726365 -9469067 - RMER19B LTR ERVK -12 890 1 3 2017 561 30 0 0 chr1 187726698 187726765 -9468667 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 2017 222 37 0 0 chr1 187727289 187727316 -9468116 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 2017 949 182 5 16 chr1 187728592 187728776 -9466656 + MTC LTR MaLR 240 421 0 3 2017 597 301 94 55 chr1 187728983 187729292 -9466140 + MT2A LTR ERVL 127 447 -86 3 2017 336 111 0 0 chr1 187729315 187729378 -9466054 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 3 2017 204 67 0 0 chr1 187729378 187729408 -9466024 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 2017 1787 263 87 56 chr1 187729814 187730548 -9464884 + L1MC1 LINE L1 5568 6324 -9 3 2017 21 0 0 0 chr1 187730553 187730574 -9464858 + AT_rich Low_complexity Low_complexity 1 21 0 3 2017 689 294 169 7 chr1 187731723 187732024 -9463408 + RMER15 LTR ERVL 223 572 -3 3 2017 234 0 0 0 chr1 187732947 187732973 -9462459 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 2017 205 53 79 0 chr1 187733921 187733959 -9461473 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 3 2017 450 318 7 7 chr1 187734112 187734264 -9461168 - RMER30 DNA MER1_type -29 173 22 3 2017 4562 38 0 13 chr1 187734838 187735378 -9460054 + L1_Mus1 LINE L1 6033 6565 -2 3 2017 268 104 0 0 chr1 187735407 187735474 -9459958 - MT2A LTR ERVL 0 533 467 3 2017 1102 218 98 28 chr1 187735543 187735934 -9459498 - MT2A LTR ERVL -55 546 3 3 2017 1423 170 69 21 chr1 187736777 187737381 -9458051 + RMER12B LTR ERVK 676 1286 -286 3 2017 315 0 0 0 chr1 187737387 187737422 -9458010 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 2017 282 125 0 0 chr1 187737461 187737509 -9457923 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 2017 216 97 0 0 chr1 187737547 187737578 -9457854 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 2017 686 284 0 28 chr1 187737652 187737833 -9457599 + B3A SINE B2 2 177 -21 3 2017 22 0 0 0 chr1 187738179 187738201 -9457231 + AT_rich Low_complexity Low_complexity 1 22 0 3 2017 270 0 0 0 chr1 187739840 187739870 -9455562 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 2017 235 132 38 38 chr1 187740671 187740750 -9454682 + CT-rich Low_complexity Low_complexity 5 83 0 3 2017 335 274 37 9 chr1 187740832 187740939 -9454493 + MLT1B LTR MaLR 265 374 -16 3 2017 959 236 186 6 chr1 187741137 187741448 -9453984 - Lx3C LINE L1 -99 6877 6511 3 2017 213 39 0 0 chr1 187741718 187741744 -9453688 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 2017 423 0 0 0 chr1 187742888 187742935 -9452497 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 2017 416 51 17 0 chr1 187742935 187742993 -9452439 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 2017 23 0 0 0 chr1 187743282 187743305 -9452127 + AT_rich Low_complexity Low_complexity 1 23 0 3 2017 348 322 222 23 chr1 187743428 187743901 -9451531 - Charlie2b DNA MER1_type -1520 1262 696 3 2017 333 216 0 0 chr1 187744000 187744088 -9451344 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 3 2017 886 163 195 33 chr1 187744265 187744480 -9450952 + MTC LTR MaLR 172 421 0 3 2017 513 226 40 8 chr1 187745068 187745193 -9450239 + MTC LTR MaLR 27 155 -266 3 2017 468 276 40 40 chr1 187745649 187745849 -9449583 + B4A SINE B4 85 284 -8 3 2017 527 308 96 36 chr1 187745962 187746118 -9449314 + MT2A LTR ERVL 84 250 -283 3 2017 210 128 0 0 chr1 187746118 187746157 -9449275 + (CTG)n Simple_repeat Simple_repeat 1 39 0 3 2017 527 308 96 36 chr1 187746157 187746333 -9449099 + MT2A LTR ERVL 251 436 -97 3 2017 586 232 0 0 chr1 187748143 187748255 -9447177 + B1_Mur1 SINE Alu 3 114 -35 3 2017 330 266 62 35 chr1 187748268 187748412 -9447020 + L1MB7 LINE L1 5945 6092 -92 3 2017 705 56 0 0 chr1 187748427 187748517 -9446915 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 3 2017 369 235 0 0 chr1 187748541 187748622 -9446810 - ID4 SINE ID 0 83 3 3 2017 292 330 39 10 chr1 187748629 187748733 -9446699 - PB1D10 SINE Alu -10 107 1 3 2017 850 234 32 55 chr1 187748803 187749020 -9446412 - B3 SINE B2 0 216 5 3 2017 840 259 135 11 chr1 187749475 187749756 -9445676 - MTEa LTR MaLR 0 379 64 3 2017 30 27 0 0 chr1 187749813 187749850 -9445582 + AT_rich Low_complexity Low_complexity 1 37 0 3 2017 340 297 31 8 chr1 187749921 187750050 -9445382 + Lx7 LINE L1 7188 7319 -377 3 2017 967 165 42 42 chr1 187750123 187750313 -9445119 + B2_Mm2 SINE B2 2 191 -4 3 2017 1232 48 0 0 chr1 187750368 187750514 -9444918 - B1_Mus2 SINE Alu 0 147 2 3 2017 22 0 0 0 chr1 187750656 187750678 -9444754 + AT_rich Low_complexity Low_complexity 1 22 0 3 2017 220 269 59 15 chr1 187752369 187752437 -9442995 + ID4_ SINE ID 2 72 -11 3 2017 190 307 159 41 chr1 187752935 187753105 -9442327 - L2c LINE L2 -288 3099 2910 3 2017 193 269 59 15 chr1 187753555 187753623 -9441809 - MIR SINE MIR -119 89 19 3 2017 297 75 0 0 chr1 187754181 187754221 -9441211 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 2017 285 98 0 0 chr1 187754485 187754526 -9440906 + (T)n Simple_repeat Simple_repeat 1 41 0 3 2017 242 159 0 80 chr1 187754680 187754755 -9440677 + T-rich Low_complexity Low_complexity 3 71 0 3 2017 226 146 0 24 chr1 187754725 187754767 -9440665 + (TTCTG)n Simple_repeat Simple_repeat 2 42 0 3 2017 735 281 31 0 chr1 187755942 187756138 -9439294 + B3 SINE B2 15 216 0 3 2017 771 234 17 11 chr1 187758178 187758536 -9436896 + (TA)n Simple_repeat Simple_repeat 1 360 0 3 2017 328 245 74 11 chr1 187758861 187758956 -9436476 - B3 SINE B2 -7 209 109 3 2017 297 0 0 0 chr1 187759542 187759575 -9435857 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 2017 411 193 0 0 chr1 187759646 187759734 -9435698 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 2017 263 261 0 0 chr1 187759734 187759799 -9435633 - B4 SINE B4 0 292 228 3 2017 474 18 0 0 chr1 187759801 187759856 -9435576 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 2017 1342 99 21 0 chr1 187759857 187760048 -9435384 - B2_Mm2 SINE B2 0 195 1 3 2017 500 233 78 0 chr1 187760103 187760219 -9435213 - B4 SINE B4 -166 126 2 3 2017 2420 84 3 6 chr1 187760378 187760702 -9434730 + ORR1A2 LTR MaLR 5 327 0 3 2017 223 277 11 46 chr1 187760847 187760934 -9434498 + MIRb SINE MIR 121 204 -64 4 2017 821 302 5 0 chr1 187762302 187762524 -9432908 + ID_B1 SINE B4 2 224 0 4 2017 275 155 56 14 chr1 187762598 187762670 -9432762 + Tigger7 DNA MER2_type 2331 2405 -86 4 2017 1536 192 77 31 chr1 187762790 187762945 -9432487 + ORR1C1 LTR MaLR 1 163 -215 4 2017 432 0 0 0 chr1 187762945 187762993 -9432439 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 2017 1536 192 77 31 chr1 187762993 187763186 -9432246 + ORR1C1 LTR MaLR 164 364 -14 4 2017 379 326 11 28 chr1 187763196 187763376 -9432056 + CT-rich Low_complexity Low_complexity 1 177 0 4 2017 225 318 15 0 chr1 187763385 187763494 -9431938 - B1F SINE Alu 0 120 9 4 2017 247 313 92 6 chr1 187763503 187763667 -9431765 - L1M3 LINE L1 -353 5830 5653 4 2017 351 0 0 0 chr1 187765020 187765059 -9430373 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 2017 198 0 0 0 chr1 187765059 187765080 -9430352 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 2017 486 0 0 0 chr1 187765080 187765133 -9430299 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 2017 875 292 40 7 chr1 187765937 187766260 -9429172 - MTE2b LTR MaLR -2 377 39 4 2017 261 315 0 0 chr1 187766263 187766336 -9429096 - MTE2b LTR MaLR -306 73 1 4 2017 216 86 0 0 chr1 187767447 187767482 -9427950 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 2017 843 241 78 46 chr1 187768921 187769269 -9426163 + ORR1E LTR MaLR 1 359 0 4 2017 297 0 0 0 chr1 187769441 187769474 -9425958 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 2017 216 0 0 0 chr1 187769474 187769497 -9425935 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 2017 342 0 0 0 chr1 187769497 187769534 -9425898 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 2017 3953 103 168 91 chr1 187769534 187770376 -9425056 - RMER17A2 LTR ERVK 0 906 1 4 2017 637 305 83 20 chr1 187770418 187770672 -9424760 - B4A SINE B4 -22 270 1 4 2017 3419 117 28 0 chr1 187772679 187773184 -9422248 + Lx3B LINE L1 6454 6972 -1 4 2017 231 36 0 0 chr1 187773187 187773215 -9422217 + (TAA)n Simple_repeat Simple_repeat 2 29 0 4 2017 908 225 52 0 chr1 187773380 187773571 -9421861 + B3 SINE B2 1 201 -15 4 2017 21 36 0 0 chr1 187773577 187773605 -9421827 + AT_rich Low_complexity Low_complexity 1 28 0 4 2017 722 292 19 0 chr1 187774072 187774281 -9421151 - ID_B1 SINE B4 -1 223 11 4 2017 283 366 42 42 chr1 187775747 187775915 -9419517 + B4A SINE B4 8 175 -117 4 2017 632 268 46 42 chr1 187775980 187776231 -9419201 - MTEa LTR MaLR -128 251 20 4 2017 246 32 0 0 chr1 187776362 187776393 -9419039 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 2017 464 271 25 0 chr1 187776558 187776680 -9418752 + L1MA7 LINE L1 5900 6024 -267 4 2017 357 240 170 7 chr1 187776692 187776839 -9418593 + L1MA7 LINE L1 6079 6249 -42 4 2017 361 227 114 98 chr1 187776883 187776942 -9418490 + ID_B1 SINE B4 91 160 -64 4 2017 1826 177 62 28 chr1 187776942 187777297 -9418135 + ORR1B2 LTR MaLR 1 367 0 4 2017 361 227 114 98 chr1 187777297 187777369 -9418063 + ID_B1 SINE B4 161 224 0 4 2017 252 370 39 23 chr1 187777449 187777579 -9417853 + B1F SINE Alu 18 149 0 4 2017 10619 116 53 5 chr1 187777801 187778782 -9416650 + Lx4A LINE L1 3584 4624 -1253 4 2017 480 35 0 0 chr1 187778782 187778840 -9416592 + (CAA)n Simple_repeat Simple_repeat 3 60 0 4 2017 10619 116 53 5 chr1 187778840 187779491 -9415941 + Lx4A LINE L1 4625 5295 -582 4 2017 4681 153 55 27 chr1 187779491 187780369 -9415063 - RLTR13D6 LTR ERVK 0 902 1 4 2017 10619 116 53 5 chr1 187780369 187780405 -9415027 + Lx4A LINE L1 5296 5333 -544 4 2017 5600 136 20 8 chr1 187780404 187781291 -9414141 + Lx4A LINE L1 5693 6590 -468 4 2017 225 0 0 0 chr1 187781315 187781340 -9414092 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 2017 1485 57 0 17 chr1 187783223 187783401 -9412031 - B2_Mm2 SINE B2 -19 176 2 4 2017 414 0 0 0 chr1 187783773 187783819 -9411613 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 2017 261 219 0 0 chr1 187783851 187783924 -9411508 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 2017 213 274 21 43 chr1 187783937 187784078 -9411354 + (CCCA)n Simple_repeat Simple_repeat 2 139 0 4 2017 318 360 9 9 chr1 187784120 187784232 -9411200 - Tigger5 DNA MER2_type -7 2399 2288 4 2017 254 363 85 45 chr1 187784223 187784399 -9411033 - Tigger5 DNA MER2_type -2163 243 62 4 2017 342 210 17 38 chr1 187784374 187784478 -9410954 + PB1D10 SINE Alu 14 109 -40 4 2017 522 314 149 15 chr1 187784834 187785231 -9410201 - L1MC3 LINE L1 -1829 5956 5507 4 2017 270 214 33 87 chr1 187785549 187785641 -9409791 + Charlie1a DNA MER1_type 566 652 -803 4 2017 367 269 0 25 chr1 187785637 187785717 -9409715 - ID4 SINE ID 0 83 6 4 2017 508 318 125 23 chr1 187785929 187786408 -9409024 + Charlie1a DNA MER1_type 901 1428 -27 4 2017 915 259 49 10 chr1 187786438 187786746 -9408686 - L1MC3 LINE L1 -3149 2997 2678 4 2017 23 54 0 0 chr1 187786788 187786825 -9408607 + AT_rich Low_complexity Low_complexity 1 37 0 4 2017 557 286 26 79 chr1 187786829 187787019 -9408413 - B3 SINE B2 0 216 37 4 2017 495 33 0 0 chr1 187787168 187787229 -9408203 + (TATG)n Simple_repeat Simple_repeat 2 62 0 4 2017 410 310 20 40 chr1 187787280 187787428 -9408004 - B4A SINE B4 -144 148 4 4 2017 316 255 63 11 chr1 187787824 187787919 -9407513 - MER3 DNA MER1_type -93 116 17 4 2017 337 247 14 0 chr1 187789390 187789463 -9405969 + ID4 SINE ID 7 80 -3 4 2017 735 299 52 29 chr1 187789626 187789836 -9405596 + B4A SINE B4 55 269 -23 4 2017 523 0 30 0 chr1 187789839 187789906 -9405526 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 2017 234 244 0 0 chr1 187791125 187791170 -9404262 + polypyrimidine Low_complexity Low_complexity 4 48 0 4 2017 208 316 0 50 chr1 187792540 187792640 -9402792 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 4 2017 182 273 58 43 chr1 187792640 187792709 -9402723 + L2b LINE L2 3301 3370 -5 4 2017 239 333 0 10 chr1 187792923 187793023 -9402409 + GA-rich Low_complexity Low_complexity 2 100 0 4 2017 191 36 0 35 chr1 187793268 187793297 -9402135 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 4 2017 212 196 0 21 chr1 187793741 187793788 -9401644 + A-rich Low_complexity Low_complexity 4 49 0 4 2017 7703 43 5 1 chr1 187795407 187796327 -9399105 - L1Md_F3 LINE L1 -1 6583 5660 4 2017 269 324 36 27 chr1 187796841 187796952 -9398480 - LTR40a LTR ERVL -37 425 314 4 2017 955 303 36 24 chr1 187797151 187797401 -9398031 + B4A SINE B4 26 278 -14 4 2017 429 236 0 20 chr1 187797451 187797801 -9397631 + GA-rich Low_complexity Low_complexity 1 342 0 4 2017 325 256 182 0 chr1 187797805 187797926 -9397506 - LTR40a LTR ERVL -375 144 2 4 2017 560 233 176 38 chr1 187799090 187799290 -9396142 + B4A SINE B4 3 229 -63 4 2017 288 200 34 68 chr1 187799290 187799349 -9396083 + PB1D9 SINE Alu 3 59 -61 4 2017 315 254 0 0 chr1 187799352 187799490 -9395942 + GA-rich Low_complexity Low_complexity 2 139 0 4 2017 517 124 20 22 chr1 187799493 187799590 -9395842 + PB1D9 SINE Alu 40 147 -2 4 2017 251 276 73 45 chr1 187800690 187800800 -9394632 + MER121 Unknown Unknown 105 217 -195 4 2017 1013 221 9 67 chr1 187801067 187801290 -9394142 - B3 SINE B2 -6 210 1 4 2017 182 370 75 7 chr1 187801353 187801500 -9393932 - MIRc SINE MIR -65 203 47 4 2017 551 284 0 36 chr1 187801836 187801975 -9393457 + B1F SINE Alu 16 149 0 4 2017 331 93 0 0 chr1 187802767 187802810 -9392622 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 2017 669 189 11 22 chr1 187802810 187802989 -9392443 + (TATG)n Simple_repeat Simple_repeat 2 178 0 4 2017 385 214 50 10 chr1 187803003 187803102 -9392330 - L1MA4 LINE L1 -388 5912 5810 4 2017 203 261 0 0 chr1 187804785 187804831 -9390601 + CT-rich Low_complexity Low_complexity 2 47 0 4 2017 4867 70 12 50 chr1 187804988 187805633 -9389799 - L1_Mus2 LINE L1 -1 6565 5945 4 2017 8294 90 3 2 chr1 187805633 187806866 -9388566 + L1_Mus2 LINE L1 4716 5947 -619 4 2017 6678 104 46 0 chr1 187807430 187808408 -9387024 + Lx LINE L1 5550 6572 -82 4 2017 963 63 0 0 chr1 187809143 187809270 -9386162 + (TCC)n Simple_repeat Simple_repeat 3 129 0 4 2017 1021 151 7 0 chr1 187809278 187809424 -9386008 - B1_Mus1 SINE Alu 0 148 2 4 2017 791 265 43 5 chr1 187810481 187810667 -9384765 - B3 SINE B2 -10 206 14 4 2017 740 329 31 9 chr1 187812058 187812282 -9383150 + B4 SINE B4 59 287 -5 4 2017 748 226 9 0 chr1 187812295 187812763 -9382669 + (CA)n Simple_repeat Simple_repeat 1 472 0 4 2017 422 151 19 19 chr1 187813951 187814059 -9381373 + (CA)n Simple_repeat Simple_repeat 2 109 0 4 2017 266 235 29 14 chr1 187814045 187814183 -9381249 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 4 2017 528 254 0 0 chr1 187814197 187814374 -9381058 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 2017 288 0 0 0 chr1 187814468 187814500 -9380932 + (T)n Simple_repeat Simple_repeat 1 32 0 4 2017 314 254 117 61 chr1 187815113 187815293 -9380139 - HAL1-3A_ME LINE L1 -831 2027 1838 4 2017 277 284 0 22 chr1 187815305 187815395 -9380037 + CT-rich Low_complexity Low_complexity 2 89 0 4 2017 791 21 0 10 chr1 187815399 187815497 -9379935 + (TTCTC)n Simple_repeat Simple_repeat 3 99 0 4 2017 278 145 0 31 chr1 187815502 187815566 -9379866 + C-rich Low_complexity Low_complexity 1 62 0 4 2017 361 302 47 9 chr1 187815683 187815790 -9379642 - PB1D7 SINE Alu -5 115 5 4 2017 6714 54 4 9 chr1 187817088 187817892 -9377540 - L1Md_F2 LINE L1 -2 6580 5781 4 2017 437 240 37 44 chr1 187818317 187818452 -9376980 + MTEa LTR MaLR 210 343 -36 4 2017 517 304 107 53 chr1 187819323 187819686 -9375746 + L1M3 LINE L1 3529 3950 -2190 4 2017 974 232 9 111 chr1 187820098 187820423 -9375009 + MER121 Unknown Unknown 8 299 -113 4 2017 637 276 168 0 chr1 187820497 187820682 -9374750 + ID_B1 SINE B4 1 216 -8 4 2017 21 36 0 0 chr1 187821188 187821216 -9374216 + AT_rich Low_complexity Low_complexity 1 28 0 4 2017 282 275 66 16 chr1 187821217 187821339 -9374093 - L1MA9 LINE L1 0 6312 6185 4 2017 31 44 0 0 chr1 187822300 187822345 -9373087 + AT_rich Low_complexity Low_complexity 1 45 0 4 2017 232 259 96 24 chr1 187822953 187823036 -9372396 - MLT1J2 LTR MaLR -206 242 154 4 2017 323 364 55 20 chr1 187823388 187823587 -9371845 - MLT2B4 LTR ERVL -137 419 214 4 2017 32106 150 20 90 chr1 187823629 187825169 -9370263 + L1_Mus1 LINE L1 261 1742 -4141 4 2017 3235 26 0 0 chr1 187825169 187825515 -9369917 + ORR1A0 LTR MaLR 1 346 0 5 252 32106 94 6 14 chr1 187825515 187830391 -9365041 + L1_Mus1 LINE L1 1743 6567 0 4 2018 373 260 137 52 chr1 187830503 187830776 -9364656 + MTEb LTR MaLR 75 379 0 5 2018 506 272 27 0 chr1 187830797 187830944 -9364488 - MLT2B4 LTR ERVL -405 151 1 4 2018 813 146 0 0 chr1 187831087 187831224 -9364208 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 2018 827 266 60 5 chr1 187831604 187831804 -9363628 + B3 SINE B2 1 211 -5 5 2018 249 346 22 37 chr1 187831815 187831950 -9363482 + MARNA DNA Mariner 403 535 -51 5 2018 8125 202 44 44 chr1 187832331 187834900 -9360532 + Lx7 LINE L1 4970 7543 -153 5 2018 204 40 0 0 chr1 187834900 187834925 -9360507 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 5 2018 8125 223 57 47 chr1 187834925 187835073 -9360359 + Lx7 LINE L1 7544 7695 -1 5 2018 3211 88 2 5 chr1 187835865 187836308 -9359124 + L1_Mus4 LINE L1 6185 6626 -10 5 2018 1118 274 64 0 chr1 187836504 187836845 -9358587 + MTE2b LTR MaLR 5 347 -12 5 2018 267 356 7 15 chr1 187837092 187837229 -9358203 + MIRb SINE MIR 17 152 -116 5 2018 733 230 80 5 chr1 187837410 187837611 -9357821 - B3 SINE B2 0 216 1 5 2018 790 225 22 0 chr1 187837620 187837802 -9357630 - L1MA5 LINE L1 -3 6297 6112 5 2018 450 0 0 0 chr1 187838034 187838084 -9357348 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 2018 191 175 0 0 chr1 187838854 187838894 -9356538 + MIRc SINE MIR 108 147 -121 5 2018 895 148 152 5 chr1 187842176 187842373 -9353059 - URR1A DNA MER1_type 0 226 1 5 2018 367 286 291 14 chr1 187844473 187844696 -9350736 + B4A SINE B4 4 288 -4 5 2018 538 274 39 7 chr1 187846114 187846268 -9349164 + B4 SINE B4 63 221 -71 5 2018 182 171 24 0 chr1 187846446 187846487 -9348945 + CT-rich Low_complexity Low_complexity 3 44 0 5 2018 549 252 24 55 chr1 187846493 187846657 -9348775 + RMER10B LTR ERVL 194 352 -46 5 2018 631 104 0 19 chr1 187846662 187846770 -9348662 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 5 2018 774 0 0 0 chr1 187846776 187846862 -9348570 + (GAA)n Simple_repeat Simple_repeat 1 86 0 5 2018 180 0 0 0 chr1 187846862 187846882 -9348550 + (CAGAGA)n Simple_repeat Simple_repeat 5 24 0 5 2018 3141 74 2 14 chr1 187847676 187848101 -9347331 - L1Md_F2 LINE L1 0 6582 6163 5 2018 3259 90 42 68 chr1 187848137 187848663 -9346769 - RLTR1B LTR ERV1 0 512 1 5 2018 268 327 52 7 chr1 187849246 187849400 -9346032 - L1MC1 LINE L1 -31 6302 6142 5 2018 450 0 0 0 chr1 187849494 187849544 -9345888 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 2018 228 288 87 35 chr1 187850451 187850566 -9344866 - L1MC1 LINE L1 -494 5839 5719 5 2018 1002 265 43 91 chr1 187851276 187851671 -9343761 + MTE2a LTR MaLR 4 379 0 5 2018 223 204 0 20 chr1 187852199 187852249 -9343183 + ID4_ SINE ID 2 50 -33 5 2018 1064 268 65 23 chr1 187852428 187852859 -9342573 - L1MB5 LINE L1 -10 6164 5716 5 2018 366 247 28 122 chr1 187853118 187853298 -9342134 + RSINE1 SINE B4 3 165 0 5 2018 28 0 0 0 chr1 187854159 187854187 -9341245 + AT_rich Low_complexity Low_complexity 1 28 0 5 2018 409 291 36 81 chr1 187854275 187854496 -9340936 + B4A SINE B4 82 292 0 5 2018 348 182 0 0 chr1 187854496 187854584 -9340848 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 2018 633 171 0 0 chr1 187854603 187854749 -9340683 + (CA)n Simple_repeat Simple_repeat 2 147 0 5 2018 307 179 29 15 chr1 187854760 187854828 -9340604 + HAL1-3A_ME LINE L1 1977 2045 -813 5 2018 189 340 45 27 chr1 187856879 187856991 -9338441 + MIRc SINE MIR 20 133 -135 5 2018 680 32 115 13 chr1 187857078 187857235 -9338197 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 5 2018 198 0 0 0 chr1 187857235 187857257 -9338175 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 2018 1081 186 29 0 chr1 187858100 187858310 -9337122 + URR1A DNA MER1_type 8 223 -3 5 2018 1352 74 79 0 chr1 187858747 187858949 -9336483 + Lx3_Mus LINE L1 6792 7009 0 5 2018 352 265 9 29 chr1 187859138 187859243 -9336189 - PB1D10 SINE Alu -7 110 8 5 2018 213 39 0 0 chr1 187860361 187860387 -9335045 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 2018 474 277 88 25 chr1 187860405 187860564 -9334868 - B3A SINE B2 -22 176 8 5 2018 253 307 0 0 chr1 187862117 187862218 -9333214 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 2018 573 136 0 0 chr1 187862218 187862321 -9333111 + (GA)n Simple_repeat Simple_repeat 1 103 0 5 2018 542 247 0 112 chr1 187862329 187862507 -9332925 - RSINE1 SINE B4 0 165 8 5 2018 23 68 0 0 chr1 187862707 187862751 -9332681 + AT_rich Low_complexity Low_complexity 1 44 0 5 2018 4903 186 18 9 chr1 187863263 187864151 -9331281 - Lx5 LINE L1 -3 7047 6152 5 2018 398 340 35 25 chr1 187865184 187865386 -9330046 - RMER15 LTR ERVL -1 574 371 5 2018 564 232 271 0 chr1 187865428 187865605 -9329827 - URR1B DNA MER1_type 0 225 1 5 2018 395 305 115 92 chr1 187868845 187869105 -9326327 + B4A SINE B4 27 292 0 5 2018 514 278 94 7 chr1 187869829 187870027 -9325405 - B3A SINE B2 -3 213 1 5 2018 428 264 143 68 chr1 187870374 187870714 -9324718 - L1M4 LINE L1 -418 5760 5398 5 2018 563 294 25 0 chr1 187870819 187870982 -9324450 + B3 SINE B2 10 176 -40 5 2018 303 316 0 0 chr1 187871076 187871152 -9324280 - B1F SINE Alu -33 116 41 5 2018 545 262 74 32 chr1 187871247 187871436 -9323996 - B3A SINE B2 0 198 2 5 2018 383 239 141 7 chr1 187871642 187871817 -9323615 + L1M5 LINE L1 2756 2952 -3194 5 2018 189 107 0 0 chr1 187871951 187871979 -9323453 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 2018 205 225 25 12 chr1 187871982 187872063 -9323369 + A-rich Low_complexity Low_complexity 3 84 0 5 2018 291 114 0 0 chr1 187872066 187872110 -9323322 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 2018 254 294 102 15 chr1 187872180 187872377 -9323055 + L1M5 LINE L1 3350 3563 -2583 5 2018 314 302 0 17 chr1 187872819 187872937 -9322495 + L1_Mur1 LINE L1 4055 4170 -1716 5 2018 21 36 0 0 chr1 187873532 187873560 -9321872 + AT_rich Low_complexity Low_complexity 1 28 0 5 2018 264 214 0 0 chr1 187873622 187873678 -9321754 - B3A SINE B2 -140 58 3 5 2018 8824 71 12 18 chr1 187873724 187874936 -9320496 - Lx3_Mus LINE L1 0 7009 5805 5 2018 3998 79 0 0 chr1 187874936 187875445 -9319987 + Lx3_Mus LINE L1 5276 5784 -102 5 2018 254 147 18 73 chr1 187875763 187875873 -9319559 + (TATG)n Simple_repeat Simple_repeat 2 105 0 5 2018 365 327 80 0 chr1 187875920 187876082 -9319350 - B3A SINE B2 -16 182 8 5 2018 333 0 0 0 chr1 187876104 187876141 -9319291 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 2018 3506 55 2 0 chr1 187876572 187877009 -9318423 - L1Md_F2 LINE L1 0 6582 6145 5 2018 474 18 0 0 chr1 187878809 187878864 -9316568 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 2018 273 197 0 0 chr1 187879465 187879531 -9315901 + (CACAA)n Simple_repeat Simple_repeat 2 67 0 5 2018 306 267 13 0 chr1 187879957 187880032 -9315400 + GA-rich Low_complexity Low_complexity 1 76 0 5 2018 2085 131 119 0 chr1 187880668 187881012 -9314420 - Lx3B LINE L1 -280 6693 6309 5 2018 972 165 15 15 chr1 187881012 187881209 -9314223 + Lx3A LINE L1 6778 6974 -7 5 2018 680 210 0 7 chr1 187882646 187882923 -9312509 + (CA)n Simple_repeat Simple_repeat 1 274 0 5 2018 969 190 19 10 chr1 187883337 187883544 -9311888 - ORR1D1 LTR MaLR 0 374 166 5 2018 247 62 0 77 chr1 187883547 187883599 -9311833 + (GGGAGA)n Simple_repeat Simple_repeat 1 48 0 5 2018 919 118 21 0 chr1 187883599 187883743 -9311689 - B2_Mm2 SINE B2 -40 155 9 5 2018 332 176 0 51 chr1 187884287 187884365 -9311067 + HAL1-3A_ME LINE L1 1976 2049 -809 5 2018 300 175 16 16 chr1 187884563 187884627 -9310805 + ID4 SINE ID 4 67 -16 5 2018 183 231 26 0 chr1 187884758 187884797 -9310635 + MIR SINE MIR 40 79 -129 5 2018 685 297 14 23 chr1 187884819 187885033 -9310399 - MTD LTR MaLR -190 229 18 5 2018 340 273 54 18 chr1 187885115 187885227 -9310205 - PB1D10 SINE Alu 0 117 2 5 2018 189 107 0 0 chr1 187885945 187885973 -9309459 + (CCCTAA)n Simple_repeat Simple_repeat 1 28 0 5 2018 1048 260 7 61 chr1 187888502 187888797 -9306635 - B4 SINE B4 -12 280 2 5 2018 237 238 75 0 chr1 187889057 187889137 -9306295 - L1MB3 LINE L1 -1 6170 6085 5 2018 1158 272 49 28 chr1 187889351 187889676 -9305756 + MTEa LTR MaLR 5 336 -43 5 2018 735 304 122 14 chr1 187889912 187890349 -9305083 - L1MB3 LINE L1 -167 6011 5517 5 2018 1285 294 26 6 chr1 187892236 187892585 -9302847 + ORR1D2 LTR MaLR 1 356 -14 5 2018 2384 160 15 49 chr1 187892716 187893124 -9302308 + ORR1B1 LTR MaLR 1 394 0 5 2018 293 292 62 10 chr1 187893394 187893491 -9301941 + PB1D7 SINE Alu 3 104 -16 5 2018 199 273 205 13 chr1 187895748 187895826 -9299606 + MIRm SINE MIR 88 180 -28 5 2018 856 302 109 3 chr1 187896471 187896783 -9298649 - Lx8 LINE L1 -170 7303 6959 5 2018 5905 151 80 32 chr1 187896787 187897935 -9297497 + RMER12 LTR ERVK 1 1203 -119 5 2018 434 239 0 11 chr1 187898059 187898152 -9297280 - Lx8 LINE L1 -515 6958 6867 5 2018 523 204 28 9 chr1 187898152 187898261 -9297171 - ORR1D2 LTR MaLR -3 367 257 5 2018 689 252 15 0 chr1 187898262 187898393 -9297039 + ETnERV2-int LTR ERVK 7070 7202 -204 5 2018 752 292 98 0 chr1 187898782 187899018 -9296414 - ORR1D2 LTR MaLR -111 259 1 5 2018 1268 302 121 38 chr1 187899021 187900025 -9295407 - Lx8 LINE L1 -609 6864 5763 5 2018 1387 191 7 37 chr1 187900035 187900247 -9295185 - ORR1D1 LTR MaLR 0 374 167 5 2018 738 53 0 0 chr1 187900247 187900342 -9295090 + (GA)n Simple_repeat Simple_repeat 1 95 0 5 2018 1387 191 7 37 chr1 187900342 187900401 -9295031 - ORR1D1 LTR MaLR -208 166 111 5 2018 330 26 0 0 chr1 187900430 187900469 -9294963 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5 2018 183 42 0 0 chr1 187901066 187901090 -9294342 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 2018 36599 79 10 4 chr1 187901244 187907580 -9287852 - L1Md_F2 LINE L1 0 6582 212 5 2018 540 267 17 0 chr1 187907658 187907774 -9287658 + ORR1E LTR MaLR 1 118 -241 5 2018 316 244 150 52 chr1 187907774 187907947 -9287485 - RLTR21 LTR ERVK 0 1572 1383 5 2018 4700 155 26 21 chr1 187907916 187908789 -9286643 - RMER12 LTR ERVK -89 1315 1 6 2018 332 324 96 62 chr1 187908789 187908834 -9286598 + ORR1E LTR MaLR 116 158 -201 5 2018 843 10 0 0 chr1 187908834 187908930 -9286502 + (CAGCC)n Simple_repeat Simple_repeat 3 98 0 6 2018 408 221 161 15 chr1 187908930 187909121 -9286311 + ORR1E LTR MaLR 159 379 0 5 2018 708 273 53 0 chr1 187909131 187909318 -9286114 + MLT1A0 LTR MaLR 165 361 -4 6 2018 776 167 363 19 chr1 187909533 187909834 -9285598 - ORR1C1 LTR MaLR 0 384 1 6 2018 314 286 100 8 chr1 187910392 187910512 -9284920 + HERVL40-int LTR ERVL 2523 2653 -2877 6 2018 420 130 0 0 chr1 187910552 187910621 -9284811 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 6 2018 679 249 93 87 chr1 187910825 187911191 -9284241 + L1M2 LINE L1 5424 5791 -506 6 2018 318 50 0 0 chr1 187911445 187911485 -9283947 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 2018 260 296 67 22 chr1 187912112 187912247 -9283185 + L1M5 LINE L1 5699 5839 -334 6 2018 1446 191 30 70 chr1 187913608 187913939 -9281493 - ORR1C2 LTR MaLR -25 359 42 6 2018 3636 140 150 15 chr1 187914169 187914834 -9280598 - RMER6A LTR ERVK -1 755 1 6 2018 195 277 108 0 chr1 187915685 187915750 -9279682 + MIRm SINE MIR 192 263 -13 6 2018 342 279 0 0 chr1 187915776 187915855 -9279577 + ID_B1 SINE B4 92 170 -54 6 2018 309 315 43 0 chr1 187915855 187915868 -9279564 + PB1D10 SINE Alu 11 106 -11 6 2018 234 0 0 0 chr1 187915869 187915895 -9279537 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 2018 5585 58 8 0 chr1 187915972 187916624 -9278808 + L1_Mus1 LINE L1 5911 6567 0 6 2018 345 24 0 0 chr1 187917057 187917099 -9278333 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 2018 209 114 0 28 chr1 187917134 187917155 -9278277 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 2018 249 33 0 0 chr1 187917155 187917185 -9278247 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 2018 209 114 0 28 chr1 187917185 187917199 -9278233 + (GA)n Simple_repeat Simple_repeat 1 14 0 6 2018 230 281 47 0 chr1 187917568 187917632 -9277800 + L2a LINE L2 3359 3425 -1 6 2018 211 383 25 0 chr1 187917656 187917737 -9277695 - L4 LINE RTE -502 1527 1445 6 2018 22 56 0 0 chr1 187917897 187917933 -9277499 + AT_rich Low_complexity Low_complexity 1 36 0 6 2018 720 52 0 0 chr1 187917933 187918030 -9277402 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 2018 246 245 59 78 chr1 187918278 187918380 -9277052 + MER3 DNA MER1_type 90 189 -20 6 2018 892 51 0 17 chr1 187920272 187920392 -9275040 + B1_Mm SINE Alu 29 146 -1 6 2018 239 176 20 0 chr1 187920700 187920751 -9274681 - L1M5 LINE L1 -304 5820 5769 6 2018 347 333 18 9 chr1 187923742 187923851 -9271581 + PB1D10 SINE Alu 7 116 -1 6 2018 357 24 0 0 chr1 187924315 187924357 -9271075 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 2018 476 268 0 38 chr1 187924511 187924643 -9270789 - RSINE1 SINE B4 -28 137 11 6 2018 270 0 0 0 chr1 187924831 187924861 -9270571 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 2018 1191 137 50 10 chr1 187924881 187925080 -9270352 - RMER20A LTR ERVK 0 516 310 6 2018 38928 29 0 0 chr1 187928050 187934444 -9260988 - L1Md_T LINE L1 0 6585 95 6 2018 450 248 56 92 chr1 187934629 187935009 -9260423 + L1MEf LINE L1 2449 2804 -3733 6 2018 280 289 0 0 chr1 187935190 187935266 -9260166 + L1MEf LINE L1 3155 3230 -3301 6 2018 472 230 139 83 chr1 187935603 187935783 -9259649 + B4A SINE B4 101 290 -2 6 2018 588 297 78 49 chr1 187935878 187936083 -9259349 + MLT1G3 LTR MaLR 371 581 -14 6 2018 269 252 79 20 chr1 187936259 187936360 -9259072 + PB1D10 SINE Alu 2 108 -9 6 2018 876 110 0 16 chr1 187936557 187936686 -9258746 + B1_Mus1 SINE Alu 22 148 0 6 2018 367 318 95 37 chr1 187936738 187936980 -9258452 + L1M5 LINE L1 3397 3652 -2494 6 2018 614 161 49 35 chr1 187937285 187937427 -9258005 + Lx4B LINE L1 6913 7056 -2 6 2018 530 146 0 10 chr1 187937427 187937524 -9257908 + GA-rich Low_complexity Low_complexity 1 96 0 6 2018 767 286 34 31 chr1 187939202 187939494 -9255938 - MTD LTR MaLR -126 293 1 6 2018 220 240 20 0 chr1 187939616 187939666 -9255766 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 2018 189 94 0 0 chr1 187940102 187940134 -9255298 + (T)n Simple_repeat Simple_repeat 1 32 0 6 2018 35 0 0 0 chr1 187940402 187940437 -9254995 + AT_rich Low_complexity Low_complexity 1 35 0 6 2018 230 320 71 60 chr1 187941723 187941956 -9253476 + L1M3 LINE L1 5618 5855 -325 6 2018 1555 162 116 45 chr1 187941956 187942337 -9253095 - RMER17C LTR ERVK -2 408 1 6 2018 230 320 71 60 chr1 187942337 187942386 -9253046 + L1M3 LINE L1 5856 5903 -277 6 2018 421 201 15 9 chr1 187943048 187943158 -9252274 + PB1D9 SINE Alu 1 109 -40 6 2018 25 0 0 0 chr1 187943338 187943363 -9252069 + AT_rich Low_complexity Low_complexity 1 25 0 6 2018 468 292 35 89 chr1 187943380 187943549 -9251883 - RSINE1 SINE B4 -1 164 5 6 2018 1011 169 11 5 chr1 187944044 187944234 -9251198 - RMER6A LTR ERVK 0 756 566 6 2018 2114 108 36 3 chr1 187944246 187944526 -9250906 - RMER6A LTR ERVK -412 344 61 6 2018 180 0 0 0 chr1 187944526 187944546 -9250886 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 2018 2114 108 36 3 chr1 187944546 187944598 -9250834 - RMER6A LTR ERVK -696 60 2 6 2018 345 24 0 0 chr1 187945385 187945427 -9250005 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 2018 454 331 19 12 chr1 187945660 187945822 -9249610 + RSINE1 SINE B4 3 165 0 6 2018 583 252 202 25 chr1 187945914 187946191 -9249241 + L1MB2 LINE L1 5640 5965 -206 6 2018 315 0 0 0 chr1 187946351 187946386 -9249046 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 2018 3199 62 7 2 chr1 187946677 187947082 -9248350 - L1_Mus2 LINE L1 0 6566 6160 6 2018 389 155 59 12 chr1 187947082 187947167 -9248265 + 5S rRNA rRNA 4 92 -29 6 2018 457 264 0 18 chr1 187947174 187947286 -9248146 - B1_Mur1 SINE Alu -7 142 33 6 2018 459 0 0 0 chr1 187947332 187947383 -9248049 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 2018 191 229 16 0 chr1 187947544 187947605 -9247827 + C-rich Low_complexity Low_complexity 5 66 0 6 2018 217 324 14 0 chr1 187947616 187947687 -9247745 + CT-rich Low_complexity Low_complexity 1 72 0 6 2018 382 258 207 16 chr1 187947688 187947881 -9247551 - HAL1-3A_ME LINE L1 -654 2204 1975 6 2018 438 220 0 0 chr1 187947931 187948108 -9247324 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 2018 391 117 0 0 chr1 187948570 187948638 -9246794 - B1_Mur2 SINE Alu -11 109 42 6 2018 1204 174 27 22 chr1 187948647 187948870 -9246562 - URR1B DNA MER1_type 0 225 2 6 2018 255 176 20 0 chr1 187949869 187949920 -9245512 + L1M3 LINE L1 5565 5616 -555 6 2018 592 283 19 26 chr1 187949920 187950065 -9245367 + RSINE1 SINE B4 3 148 -17 6 2018 513 92 0 0 chr1 187950065 187950141 -9245291 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 2018 467 323 60 53 chr1 187950155 187950590 -9244842 + L1MA4 LINE L1 5595 6032 -268 6 2018 195 42 0 0 chr1 187950847 187950871 -9244561 + (TTTAG)n Simple_repeat Simple_repeat 3 26 0 6 2018 375 242 193 43 chr1 187951551 187951758 -9243674 + Lx8 LINE L1 7219 7456 -17 6 2018 1061 122 196 5 chr1 187954416 187954605 -9240827 - URR1A DNA MER1_type 0 226 2 6 2018 240 163 0 0 chr1 187955303 187955346 -9240086 + G-rich Low_complexity Low_complexity 5 47 0 6 2018 885 271 31 89 chr1 187955804 187956185 -9239247 - MTEa LTR MaLR -2 377 19 6 2018 351 284 19 29 chr1 187956327 187956432 -9239000 + B1F SINE Alu 31 134 -15 6 2018 977 116 26 23 chr1 187956453 187956810 -9238622 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 6 2018 393 22 0 0 chr1 187956820 187956866 -9238566 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 2018 333 0 0 0 chr1 187956887 187956924 -9238508 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 6 252 4411 109 6 8 chr1 187957060 187957705 -9237727 + Lx3A LINE L1 6324 6967 -14 6 2019 258 32 0 0 chr1 187957705 187957736 -9237696 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 2019 603 269 171 10 chr1 187958378 187958577 -9236855 + B4A SINE B4 2 232 -60 6 2019 3037 45 0 0 chr1 187958582 187958934 -9236498 - L1_Mus1 LINE L1 -101 6466 6115 6 2019 423 165 40 30 chr1 187958934 187959034 -9236398 + L1Md_F2 LINE L1 6482 6582 0 6 2019 258 32 0 0 chr1 187959090 187959121 -9236311 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 2019 209 259 11 34 chr1 187959137 187959178 -9236254 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 2019 486 88 0 0 chr1 187959178 187959246 -9236186 + (CATA)n Simple_repeat Simple_repeat 1 68 0 6 2019 209 259 11 34 chr1 187959246 187959292 -9236140 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 2019 339 65 0 0 chr1 187959294 187959340 -9236092 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 2019 360 43 0 0 chr1 187961262 187961308 -9234124 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 2019 233 284 221 0 chr1 187961329 187961424 -9234008 - RSINE1 SINE B4 -31 134 19 6 2019 378 186 34 7 chr1 187963774 187963920 -9231512 + (TG)n Simple_repeat Simple_repeat 2 151 0 6 2019 521 278 83 72 chr1 187963942 187964206 -9231226 - B4A SINE B4 0 292 26 6 2019 317 320 64 34 chr1 187964284 187964517 -9230915 + MIR SINE MIR 23 262 0 6 2019 521 253 107 0 chr1 187965149 187965299 -9230133 + B4 SINE B4 42 207 -85 6 2019 1059 112 0 0 chr1 187965301 187965471 -9229961 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 2019 417 308 57 23 chr1 187965820 187965996 -9229436 + B3A SINE B2 17 198 0 6 2019 983 90 0 7 chr1 187966006 187966151 -9229281 + (GAAAA)n Simple_repeat Simple_repeat 2 145 0 6 2019 239 200 57 0 chr1 187966240 187966310 -9229122 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 6 2019 318 132 0 0 chr1 187966325 187966378 -9229054 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 2019 279 164 0 0 chr1 187966377 187966438 -9228994 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 2019 233 352 9 27 chr1 187966451 187966562 -9228870 + (TG)n Simple_repeat Simple_repeat 2 110 0 7 2019 265 267 23 0 chr1 187966581 187966712 -9228720 + (TATATG)n Simple_repeat Simple_repeat 2 135 0 7 2019 912 289 8 20 chr1 187966775 187967019 -9228413 - B4 SINE B4 -12 280 40 7 2019 1039 167 10 171 chr1 187967023 187967327 -9228105 + MT2B LTR ERVL 2 256 -345 7 2019 2430 198 92 2 chr1 187967203 187967820 -9227612 + ORR1B1-int LTR MaLR 624 1296 -213 7 2019 23 68 0 0 chr1 187968217 187968261 -9227171 + AT_rich Low_complexity Low_complexity 1 44 0 7 2019 372 133 0 0 chr1 187968774 187968834 -9226598 + (T)n Simple_repeat Simple_repeat 1 60 0 7 2019 535 264 34 34 chr1 187969795 187970003 -9225429 - MER121 Unknown Unknown -166 246 39 7 2019 212 31 62 0 chr1 187970467 187970499 -9224933 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 2019 568 312 19 14 chr1 187970901 187971109 -9224323 + B4A SINE B4 25 233 -59 7 2019 893 264 81 19 chr1 187971126 187971558 -9223874 + L1M2 LINE L1 4292 4750 -1393 7 2019 437 217 29 5 chr1 187971550 187971676 -9223756 - L1M2 LINE L1 -921 4959 4831 7 2019 711 190 0 0 chr1 187971683 187971825 -9223607 + GA-rich Low_complexity Low_complexity 4 145 0 7 2019 291 288 41 29 chr1 187971902 187972074 -9223358 - L1M2 LINE L1 -1344 4799 4626 7 2019 584 322 53 38 chr1 187972674 187972999 -9222433 + MLT-int LTR MaLR 956 1592 -143 7 2019 539 274 43 29 chr1 187974339 187974546 -9220886 + ID_B1 SINE B4 2 211 -13 7 2019 460 223 23 144 chr1 187974571 187974744 -9220688 - Lx7 LINE L1 -1 7695 7544 7 2019 540 309 143 8 chr1 187975145 187975383 -9220049 + B4A SINE B4 8 277 -15 7 2019 886 207 85 39 chr1 187975410 187975509 -9219923 + RLTR15 LTR ERVK 3 101 -258 7 2019 639 0 0 0 chr1 187975509 187975580 -9219852 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 2019 886 207 85 39 chr1 187975580 187975786 -9219646 + RLTR15 LTR ERVK 102 322 -37 7 2019 605 80 11 0 chr1 187975838 187975926 -9219506 + (TC)n Simple_repeat Simple_repeat 2 90 0 7 2019 477 0 0 0 chr1 187976582 187976635 -9218797 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 2019 3510 106 16 23 chr1 187977504 187978063 -9217369 - Lx3A LINE L1 -519 6462 5908 7 2019 249 95 0 0 chr1 187978085 187978127 -9217305 + Lx3A LINE L1 6940 6981 0 7 2019 3069 9 0 0 chr1 187978492 187978829 -9216603 + L1Md_A LINE L1 5250 5586 -297 7 2019 9008 13 0 0 chr1 187978829 187979824 -9215608 + L1Md_A LINE L1 5587 6581 -1 7 2019 252 0 0 0 chr1 187979829 187979857 -9215575 + (A)n Simple_repeat Simple_repeat 1 28 0 7 2019 2576 259 87 35 chr1 187979857 187980706 -9214726 - Lx8 LINE L1 -419 7054 6162 7 2019 587 295 95 17 chr1 187981041 187981282 -9214150 + ORR1D2 LTR MaLR 74 333 -37 7 2019 583 295 14 28 chr1 187983249 187983462 -9211970 + ID_B1 SINE B4 4 213 -11 7 2019 863 271 90 34 chr1 187984611 187984932 -9210500 - ORR1D2 LTR MaLR -29 341 3 7 2019 27 0 0 0 chr1 187985457 187985484 -9209948 + AT_rich Low_complexity Low_complexity 1 27 0 7 2019 631 286 62 71 chr1 187986036 187986345 -9209087 + ORR1E LTR MaLR 1 306 -53 7 2019 218 282 43 43 chr1 187986436 187986551 -9208881 - MER5B DNA MER1_type -51 127 13 7 2019 453 144 0 0 chr1 187986633 187986723 -9208709 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 7 2019 603 40 0 0 chr1 187987052 187987126 -9208306 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 2019 22 0 0 0 chr1 187988045 187988067 -9207365 + AT_rich Low_complexity Low_complexity 1 22 0 7 2019 186 43 0 0 chr1 187988073 187988096 -9207336 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 7 2019 517 247 130 26 chr1 187988113 187988267 -9207165 - B3 SINE B2 -46 170 1 7 2019 611 35 24 0 chr1 187989627 187989712 -9205720 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 7 2019 399 307 52 134 chr1 187989770 187990075 -9205357 - B4A SINE B4 -12 280 1 7 2019 325 336 82 20 chr1 187990264 187990556 -9204876 - L1M5 LINE L1 -1809 4337 4028 7 2019 336 24 0 0 chr1 187991164 187991205 -9204227 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 2019 261 274 81 0 chr1 187991454 187991516 -9203916 - B3 SINE B2 -43 173 107 7 2019 353 322 67 78 chr1 187991829 187992112 -9203320 + B4 SINE B4 13 292 0 7 2019 284 324 6 88 chr1 187992402 187992561 -9202871 - MIRb SINE MIR -102 166 21 7 2019 3341 144 31 5 chr1 187992607 187993187 -9202245 + RLTR17 LTR ERVK 98 692 0 7 2019 672 250 0 0 chr1 187993188 187993328 -9202104 - B1_Mur1 SINE Alu -8 141 2 7 2019 185 86 0 54 chr1 187994889 187994926 -9200506 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 7 2019 825 288 122 11 chr1 187994947 187995309 -9200123 + L1MA4 LINE L1 5428 5829 -471 7 2019 758 280 0 11 chr1 187995355 187995539 -9199893 - B3 SINE B2 -34 182 1 7 2019 382 300 76 15 chr1 187995819 187995951 -9199481 + B3 SINE B2 66 205 -11 7 2019 240 263 0 0 chr1 187997220 187997277 -9198155 + MIRc SINE MIR 170 226 -42 7 2019 393 95 0 0 chr1 187998071 187998134 -9197298 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 2019 270 95 0 0 chr1 187998134 187998176 -9197256 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 2019 265 343 29 0 chr1 187999023 187999163 -9196269 - MER115 DNA Tip100 -27 666 523 7 2019 1526 148 89 11 chr1 187999664 187999968 -9195464 - ORR1B2 LTR MaLR -8 321 1 7 2019 190 29 57 29 chr1 188000050 188000085 -9195347 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 2019 261 0 0 0 chr1 188001492 188001521 -9193911 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 2019 203 88 29 0 chr1 188002865 188002899 -9192533 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 3 2019 288 322 43 32 chr1 188003285 188003378 -9192054 - B1_Mur2 SINE Alu -54 95 2 4 2019 231 281 34 79 chr1 188003298 188003387 -9192045 - MT2B LTR ERVL -361 240 156 5 2019 349 243 48 19 chr1 188003586 188003691 -9191741 - ID_B1 SINE B4 0 224 117 6 2019 518 259 32 25 chr1 188003703 188003903 -9191529 - L1M4 LINE L1 -748 5430 5230 7 2019 432 298 17 9 chr1 188004040 188004155 -9191277 - PB1D10 SINE Alu 0 117 2 8 2019 258 105 0 0 chr1 188006095 188006133 -9189299 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 9 2019 702 286 71 26 chr1 188007375 188007601 -9187831 - B4 SINE B4 -55 237 2 1 2019 495 0 0 0 chr1 188007802 188007857 -9187575 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 2019 483 48 0 0 chr1 188008716 188008778 -9186654 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 2019 630 168 0 0 chr1 188008780 188008941 -9186491 + (CA)n Simple_repeat Simple_repeat 2 162 0 1 2019 473 276 159 0 chr1 188010203 188010373 -9185059 - B3A SINE B2 0 198 2 1 2019 468 0 0 0 chr1 188010574 188010626 -9184806 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 2019 2069 183 58 15 chr1 188010709 188011109 -9184323 - MTC LTR MaLR -3 418 2 1 2019 380 289 187 12 chr1 188011897 188012152 -9183280 - MTD LTR MaLR 0 419 84 1 2019 23 0 0 0 chr1 188012622 188012645 -9182787 + AT_rich Low_complexity Low_complexity 1 23 0 1 2019 551 191 0 16 chr1 188012692 188012820 -9182612 + CT-rich Low_complexity Low_complexity 6 131 0 1 2019 194 192 0 19 chr1 188012970 188013023 -9182409 + GA-rich Low_complexity Low_complexity 2 53 0 2 2019 313 308 163 60 chr1 188015442 188015791 -9179641 + L2a LINE L2 3038 3422 -4 2 2019 471 290 75 31 chr1 188015825 188015985 -9179447 + ORR1E LTR MaLR 1 167 -192 2 2019 185 0 40 0 chr1 188016078 188016103 -9179329 + (CACCC)n Simple_repeat Simple_repeat 4 29 0 2 2019 817 290 58 44 chr1 188017011 188017040 -9178392 - B4A SINE B4 0 292 271 2 2019 342 0 0 0 chr1 188017040 188017078 -9178354 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2019 817 290 58 44 chr1 188017078 188017322 -9178110 - B4A SINE B4 -22 270 15 2 2019 580 258 59 77 chr1 188018541 188018814 -9176618 - L1MA6 LINE L1 -23 6277 6010 2 2019 289 235 36 36 chr1 188019844 188019981 -9175451 + (TTATA)n Simple_repeat Simple_repeat 4 140 0 2 2019 2094 294 125 36 chr1 188020382 188021531 -9173901 - Lx9 LINE L1 -15 7629 6379 2 2019 238 337 19 29 chr1 188022090 188022194 -9173238 - BC1_Mm scRNA scRNA -47 105 3 2 2019 346 380 59 24 chr1 188022431 188022684 -9172748 - HAL1 LINE L1 -615 1892 1631 3 2019 262 243 9 43 chr1 188022689 188022805 -9172627 - Lx9 LINE L1 0 7644 7533 3 2019 40 21 0 0 chr1 188022816 188022863 -9172569 + AT_rich Low_complexity Low_complexity 1 47 0 3 2019 555 16 0 0 chr1 188022890 188022954 -9172478 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 2019 1130 239 0 0 chr1 188022971 188023201 -9172231 - Lx9 LINE L1 -174 7470 7241 3 2019 514 316 88 4 chr1 188023899 188024150 -9171282 - L1MB7 LINE L1 -144 6040 5769 3 2019 855 267 84 21 chr1 188024253 188024792 -9170640 - L1MB7 LINE L1 -752 5428 4855 3 2019 879 292 52 63 chr1 188024802 188025185 -9170247 + MTEa LTR MaLR 1 379 0 3 2019 391 294 35 60 chr1 188025186 188025302 -9170130 + MTEa-int LTR MaLR 2 114 -1466 3 2019 1008 278 100 23 chr1 188025501 188025851 -9169581 + MTD LTR MaLR 43 419 0 3 2019 272 234 16 0 chr1 188026823 188026887 -9168545 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 2019 466 378 48 85 chr1 188026919 188027191 -9168241 - B4 SINE B4 -3 289 28 3 2019 315 211 81 136 chr1 188027357 188027555 -9167877 - HAL1-2a_MD LINE L1 -524 2500 2314 3 2019 464 162 6 18 chr1 188027759 188027870 -9167562 - MTE2a LTR MaLR 0 379 261 4 2019 720 0 0 0 chr1 188028716 188028796 -9166636 + (GGAAA)n Simple_repeat Simple_repeat 5 84 0 4 2019 289 303 53 118 chr1 188029462 188029649 -9165783 - B4A SINE B4 -6 286 112 4 2019 309 224 192 56 chr1 188029692 188029994 -9165438 + L1MCa LINE L1 1118 1460 -5048 4 2019 352 276 88 66 chr1 188030238 188030374 -9165058 + RSINE1 SINE B4 2 140 -25 4 2019 183 80 0 0 chr1 188030375 188030400 -9165032 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 2019 570 98 0 0 chr1 188030405 188030487 -9164945 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 2019 241 248 57 107 chr1 188030599 188030678 -9164754 + L1MCa LINE L1 1730 1806 -4702 4 2019 1283 116 0 45 chr1 188030678 188030876 -9164556 - B2_Mm2 SINE B2 -6 189 1 4 2019 241 248 57 107 chr1 188030876 188030936 -9164496 + L1MCa LINE L1 1807 1862 -4646 4 2019 473 375 38 58 chr1 188031098 188031543 -9163889 - MLT2B3 LTR ERVL -107 447 12 4 2019 1427 293 46 46 chr1 188031595 188032268 -9163164 - L1MC LINE L1 -2931 3215 2543 4 2019 926 27 0 0 chr1 188032665 188032776 -9162656 + B1_Mus1 SINE Alu 26 136 -12 5 2019 405 0 0 0 chr1 188032776 188032821 -9162611 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 5 2019 21 36 0 0 chr1 188032841 188032869 -9162563 + AT_rich Low_complexity Low_complexity 1 28 0 5 2019 3537 88 0 34 chr1 188033143 188033653 -9161779 - L1_Mus2 LINE L1 -923 5643 5153 5 2019 7495 51 4 3 chr1 188033651 188034575 -9160857 + L1_Mus2 LINE L1 5640 6564 -2 5 2019 252 0 0 0 chr1 188034882 188034910 -9160522 + (CTAA)n Simple_repeat Simple_repeat 4 31 0 5 2019 670 153 9 18 chr1 188035249 188035362 -9160070 + PB1D10 SINE Alu 5 116 -1 5 2019 22 35 0 0 chr1 188035958 188035987 -9159445 + AT_rich Low_complexity Low_complexity 1 29 0 5 2019 627 274 128 59 chr1 188036011 188036348 -9159084 + MER121 Unknown Unknown 14 373 -39 5 2019 1921 209 13 13 chr1 188036534 188036908 -9158524 + ORR1D1 LTR MaLR 1 374 0 5 2019 279 400 55 11 chr1 188036917 188037099 -9158333 + B4A SINE B4 9 198 -94 5 2019 6871 140 7 9 chr1 188037623 188037637 -9157795 - Lx LINE L1 0 6654 6641 6 2019 2764 22 40 34 chr1 188037637 188037962 -9157470 - IAPLTR2b LTR ERVK 0 327 1 6 2019 9909 146 12 7 chr1 188037962 188040344 -9155088 - Lx LINE L1 -14 6640 4241 6 2019 211 298 0 0 chr1 188040394 188040451 -9154981 + GA-rich Low_complexity Low_complexity 1 57 0 6 2019 597 285 7 0 chr1 188040528 188040672 -9154760 - ID_B1 SINE B4 -9 215 71 6 2019 188 254 49 33 chr1 188040679 188040740 -9154692 - MIRc SINE MIR -114 154 93 6 2019 332 330 35 26 chr1 188042705 188042862 -9152570 + MLT1J2 LTR MaLR 39 186 -258 6 2019 188 250 105 23 chr1 188043195 188043281 -9152151 + L2a LINE L2 3314 3406 -20 6 2019 396 0 0 0 chr1 188043901 188043945 -9151487 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 2019 660 247 29 40 chr1 188044354 188044527 -9150905 - B3A SINE B2 -27 171 1 6 2019 672 316 56 0 chr1 188045336 188045570 -9149862 + MTE2b LTR MaLR 1 247 -132 6 2019 401 316 89 32 chr1 188045791 188045948 -9149484 + MTE2b LTR MaLR 214 379 0 6 2019 1093 59 7 13 chr1 188046959 188047114 -9148318 + (TCTCCC)n Simple_repeat Simple_repeat 3 156 0 7 2019 229 260 0 0 chr1 188048806 188048856 -9146576 + CT-rich Low_complexity Low_complexity 4 53 0 7 2019 767 259 113 10 chr1 188048860 188049055 -9146377 - ID_B1 SINE B4 -8 216 2 7 2019 686 280 77 39 chr1 188049688 188050026 -9145406 - ORR1E LTR MaLR -8 351 1 7 2019 430 230 0 53 chr1 188051222 188051410 -9144022 + (TATG)n Simple_repeat Simple_repeat 2 179 0 7 2019 249 33 0 0 chr1 188051805 188051835 -9143597 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 2019 687 247 12 43 chr1 188051835 188051996 -9143436 - RSINE1 SINE B4 -7 158 3 7 2019 200 346 30 37 chr1 188052054 188052189 -9143243 + MIRc SINE MIR 62 195 -73 7 2019 323 328 115 0 chr1 188053753 188053875 -9141557 + ORR1D1 LTR MaLR 6 141 -218 7 2019 560 304 25 45 chr1 188054251 188054451 -9140981 - MER58A DNA MER1_type -19 205 10 7 2019 180 0 0 0 chr1 188055188 188055208 -9140224 + (T)n Simple_repeat Simple_repeat 1 20 0 8 2019 550 238 136 123 chr1 188055748 188056064 -9139368 + RLTR11B LTR ERVK 7 326 -127 8 2019 270 212 88 99 chr1 188056056 188056234 -9139198 + RLTR12B LTR ERVK 367 559 -9 8 2019 1392 89 0 32 chr1 188056565 188056785 -9138647 - MTB LTR MaLR 0 400 188 8 2019 357 201 35 163 chr1 188056755 188056927 -9138505 + ORR1D1 LTR MaLR 216 365 -9 7 2019 3711 112 122 3 chr1 188056980 188057594 -9137838 - Lx4A LINE L1 -737 6321 5637 8 2019 4821 110 42 3 chr1 188057594 188058304 -9137128 + Lx4A LINE L1 6321 7058 0 8 2019 683 237 91 30 chr1 188058304 188058328 -9137104 - Lx4A LINE L1 -502 5666 5645 8 2019 291 308 91 20 chr1 188059483 188059668 -9135764 - MIRb SINE MIR -79 197 1 8 2019 203 216 19 38 chr1 188060401 188060454 -9134978 + G-rich Low_complexity Low_complexity 6 57 0 8 2019 384 264 11 6 chr1 188062682 188062857 -9132575 + CT-rich Low_complexity Low_complexity 2 177 0 8 2019 418 122 28 18 chr1 188063275 188063384 -9132048 + GA-rich Low_complexity Low_complexity 1 110 0 8 2019 728 294 42 79 chr1 188063785 188064213 -9131219 - Lx9 LINE L1 -20 7624 7213 8 2019 310 253 45 11 chr1 188065128 188065216 -9130216 - ORR1E LTR MaLR -268 91 1 9 2019 224 272 3 25 chr1 188065609 188065688 -9129744 - L2c LINE L2 0 3387 3296 9 2019 225 0 0 0 chr1 188066298 188066323 -9129109 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 2019 837 244 123 11 chr1 188066506 188066767 -9128665 - RMER15 LTR ERVL 0 575 286 9 2019 388 289 182 0 chr1 188066943 188067102 -9128330 + MTEa LTR MaLR 148 335 -44 9 2019 492 116 116 0 chr1 188067108 188067194 -9128238 + RLTR28 LTR ERVL 1 96 -428 9 2019 1163 62 7 0 chr1 188067195 188067340 -9128092 + B1_Mus1 SINE Alu 2 147 -1 9 2019 194 0 39 0 chr1 188067340 188067366 -9128066 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 2019 32 57 0 0 chr1 188067385 188067438 -9127994 + AT_rich Low_complexity Low_complexity 1 53 0 9 2019 198 0 0 0 chr1 188067439 188067461 -9127971 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 2019 1498 155 115 33 chr1 188067674 188068040 -9127392 + RLTR28 LTR ERVL 99 494 -30 9 2019 185 35 0 65 chr1 188068043 188068074 -9127358 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 2019 299 229 14 14 chr1 188068714 188068785 -9126647 + ID4 SINE ID 5 75 -8 1 2019 670 137 20 14 chr1 188068787 188068935 -9126497 + (TA)n Simple_repeat Simple_repeat 2 150 0 1 2019 25 0 0 0 chr1 188069317 188069342 -9126090 + AT_rich Low_complexity Low_complexity 1 25 0 1 2019 459 0 0 0 chr1 188069937 188069988 -9125444 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 2019 274 304 51 21 chr1 188070437 188070717 -9124715 + L1MEf LINE L1 772 1060 -5182 1 2019 297 341 134 31 chr1 188070810 188071905 -9123527 + L1MEf LINE L1 1052 2259 -3983 1 2019 247 374 80 26 chr1 188072001 188072265 -9123167 + L1MEf LINE L1 2416 2693 -3453 1 2019 252 318 63 63 chr1 188072710 188072901 -9122531 - MLT1J2 LTR MaLR -233 211 21 1 2019 21 36 0 0 chr1 188073992 188074020 -9121412 + AT_rich Low_complexity Low_complexity 1 28 0 1 2019 249 315 64 9 chr1 188075752 188075861 -9119571 - MLT1C LTR MaLR -350 117 3 1 2019 806 274 72 17 chr1 188076573 188076863 -9118569 + MTE2b LTR MaLR 69 374 -5 1 2019 230 366 11 0 chr1 188077001 188077094 -9118338 + MER5B DNA MER1_type 85 178 0 1 2019 330 324 98 39 chr1 188077180 188077485 -9117947 - MER46C DNA MER2_type -15 323 1 1 2019 253 211 25 133 chr1 188077839 188077959 -9117473 + MLT1C LTR MaLR 159 265 -202 1 2019 279 0 0 0 chr1 188078864 188078895 -9116537 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 2019 212 302 0 0 chr1 188078952 188079005 -9116427 + GA-rich Low_complexity Low_complexity 3 55 0 1 2019 368 229 18 24 chr1 188079017 188079187 -9116245 + GA-rich Low_complexity Low_complexity 1 169 0 1 2019 345 47 0 0 chr1 188079610 188079653 -9115779 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 2019 611 87 10 0 chr1 188079984 188080088 -9115344 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 2019 874 288 48 12 chr1 188080088 188080425 -9115007 + MLT2C1 LTR ERVL 5 353 -44 1 2019 434 109 32 11 chr1 188080738 188080831 -9114601 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 2019 255 234 16 0 chr1 188081283 188081347 -9114085 + MLT2B5 LTR ERVL 1 65 -652 1 2019 188 368 64 23 chr1 188083848 188084112 -9111320 - L2 LINE L2 -356 3063 2789 1 2019 339 332 86 22 chr1 188084177 188084491 -9110941 - L2 LINE L2 -729 2690 2357 1 2019 195 42 0 0 chr1 188085337 188085361 -9110071 + (A)n Simple_repeat Simple_repeat 1 24 0 1 2019 303 28 0 0 chr1 188085776 188085812 -9109620 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 2019 390 74 0 0 chr1 188085812 188085865 -9109567 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 2019 781 279 92 8 chr1 188085889 188086138 -9109294 - B4A SINE B4 -12 280 11 1 2019 381 224 63 8 chr1 188086132 188086258 -9109174 + ORR1D2 LTR MaLR 238 370 0 1 2019 330 132 0 0 chr1 188086474 188086527 -9108905 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 2019 387 0 0 0 chr1 188086709 188086752 -9108680 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 2019 311 345 9 0 chr1 188087055 188087165 -9108267 + PB1D10 SINE Alu 1 111 -6 1 2019 655 300 70 26 chr1 188087315 188087585 -9107847 + B4A SINE B4 3 284 -8 1 2019 246 222 16 16 chr1 188088178 188088218 -9107214 + polypyrimidine Low_complexity Low_complexity 24 64 0 1 2019 792 32 0 0 chr1 188088218 188088313 -9107119 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 1 252 246 222 16 16 chr1 188088313 188088336 -9107096 + polypyrimidine Low_complexity Low_complexity 1 23 0 1 2020 187 253 83 64 chr1 188089309 188089465 -9105967 - L3 LINE CR1 -1606 2883 2725 1 2020 521 262 60 91 chr1 188089697 188089949 -9105483 - ORR1E LTR MaLR -40 319 76 1 2020 460 294 36 53 chr1 188090201 188090503 -9104929 - MTE2a LTR MaLR -59 360 80 1 2020 27 29 0 0 chr1 188090759 188090793 -9104639 + AT_rich Low_complexity Low_complexity 1 34 0 1 2020 24 77 0 0 chr1 188090947 188090999 -9104433 + AT_rich Low_complexity Low_complexity 1 52 0 1 2020 340 208 14 0 chr1 188091122 188091194 -9104238 + B3 SINE B2 1 73 -143 1 2020 591 69 48 42 chr1 188091704 188091870 -9103562 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 1 2020 945 107 0 0 chr1 188092097 188092237 -9103195 + (GGGGA)n Simple_repeat Simple_repeat 2 141 0 1 2020 785 83 76 0 chr1 188092280 188092437 -9102995 + GA-rich Low_complexity Low_complexity 3 171 0 1 2020 207 220 0 0 chr1 188093503 188093553 -9101879 + GA-rich Low_complexity Low_complexity 3 52 0 1 2020 918 257 0 54 chr1 188093821 188093849 -9101583 + B3 SINE B2 2 29 -187 1 2020 1895 42 13 0 chr1 188093849 188094088 -9101344 + L1Md_F2 LINE L1 6341 6582 0 1 2020 918 257 0 54 chr1 188094088 188094281 -9101151 + B3 SINE B2 30 211 -5 1 2020 870 134 0 0 chr1 188094472 188094636 -9100796 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 2020 257 220 9 0 chr1 188094699 188094808 -9100624 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 2020 617 243 114 78 chr1 188094882 188095163 -9100269 - B4 SINE B4 0 292 2 1 2020 1332 267 43 36 chr1 188096303 188096719 -9098713 - MTD LTR MaLR 0 419 1 1 2020 1214 106 5 5 chr1 188096896 188097085 -9098347 + BGLII LTR ERVK 233 421 0 1 2020 381 255 70 20 chr1 188097616 188097716 -9097716 - MTE2a LTR MaLR -28 351 247 1 2020 212 286 0 0 chr1 188099037 188099093 -9096339 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 2020 281 271 25 23 chr1 188099235 188099342 -9096090 + L1MA4 LINE L1 5822 5932 -380 1 2020 482 272 24 54 chr1 188099603 188099770 -9095662 + RSINE1 SINE B4 2 163 -2 1 2020 32 26 0 0 chr1 188099770 188099809 -9095623 + AT_rich Low_complexity Low_complexity 1 39 0 1 2020 24 32 0 0 chr1 188099951 188099982 -9095450 + AT_rich Low_complexity Low_complexity 1 31 0 1 2020 279 0 0 0 chr1 188100408 188100439 -9094993 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 2020 2866 34 34 0 chr1 188101222 188101575 -9093857 + L1Md_F2 LINE L1 6218 6582 0 1 2020 339 257 0 0 chr1 188101652 188101726 -9093706 + ID4_ SINE ID 6 79 -4 1 2020 278 80 0 20 chr1 188101773 188101824 -9093608 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 1 2020 189 0 0 0 chr1 188102176 188102197 -9093235 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 2020 2956 270 64 19 chr1 188103532 188104454 -9090978 - RCHARR1 DNA MER1_type -11 963 1 1 2020 183 322 17 0 chr1 188105110 188105169 -9090263 - L2c LINE L2 -310 3077 3018 1 2020 374 308 188 54 chr1 188105299 188105539 -9089893 + B4 SINE B4 1 272 -20 1 2020 201 39 0 0 chr1 188105565 188105591 -9089841 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 2020 534 16 0 0 chr1 188105591 188105653 -9089779 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 2020 243 0 0 0 chr1 188105672 188105699 -9089733 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 2020 523 284 0 7 chr1 188105781 188105916 -9089516 - B4 SINE B4 -157 135 2 1 2020 225 65 0 0 chr1 188106115 188106146 -9089286 + (CAT)n Simple_repeat Simple_repeat 2 32 0 1 2020 242 355 122 16 chr1 188106465 188106654 -9088778 + MamGypLTR2 LTR Gypsy 509 717 -472 1 2020 308 24 24 0 chr1 188107355 188107396 -9088036 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 2020 223 320 67 10 chr1 188107615 188107719 -9087713 + L2b LINE L2 3265 3374 -1 1 2020 299 196 0 0 chr1 188107742 188107793 -9087639 - ID4 SINE ID -5 78 28 1 2020 1169 79 48 48 chr1 188108115 188108302 -9087130 + B2_Mm2 SINE B2 1 187 -8 1 2020 195 222 74 0 chr1 188108345 188108399 -9087033 - L2a LINE L2 -4 3422 3365 1 2020 5341 47 26 49 chr1 188108630 188109350 -9086082 - L1Md_F2 LINE L1 -2 6580 5877 1 2020 1438 19 0 0 chr1 188109350 188109511 -9085921 + L1Md_F2 LINE L1 5708 5868 -714 1 2020 788 229 24 29 chr1 188109549 188109756 -9085676 + B3 SINE B2 1 206 -10 1 2020 496 310 39 0 chr1 188109954 188110083 -9085349 + ID_B1 SINE B4 82 215 -9 1 2020 740 11 11 0 chr1 188110609 188110698 -9084734 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 2020 224 256 141 0 chr1 188110760 188110838 -9084594 + MIRc SINE MIR 85 176 -100 1 2020 772 302 0 86 chr1 188111525 188111836 -9083596 - ORR1E LTR MaLR -2 377 79 1 2020 265 322 22 44 chr1 188111855 188111946 -9083486 + ORR1E LTR MaLR 5 93 -266 1 2020 328 344 10 0 chr1 188112252 188112348 -9083084 - MamSINE1 SINE tRNA -167 123 27 1 2020 491 289 25 32 chr1 188112710 188112867 -9082565 + RSINE1 SINE B4 5 160 -5 1 2020 608 232 175 33 chr1 188113066 188113249 -9082183 - B3 SINE B2 -6 210 2 1 2020 561 128 17 8 chr1 188113771 188113889 -9081543 - Lx2B LINE L1 -855 6145 6027 1 2020 4292 170 45 36 chr1 188113887 188114746 -9080686 + Lx2B LINE L1 6134 7000 0 1 2020 561 257 72 90 chr1 188115439 188115585 -9079847 - Lx6 LINE L1 -93 7367 7208 1 2020 1123 102 0 11 chr1 188115585 188115764 -9079668 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 1 2020 561 257 72 90 chr1 188115764 188115839 -9079593 - Lx6 LINE L1 -253 7207 7150 1 2020 309 324 9 56 chr1 188117298 188117406 -9078026 - B3A SINE B2 0 198 96 1 2020 1037 248 9 14 chr1 188117597 188117810 -9077622 + B3 SINE B2 5 216 0 1 2020 289 288 0 186 chr1 188118578 188118723 -9076709 + RSINE1 SINE B4 7 124 -41 1 2020 801 185 93 97 chr1 188118755 188118971 -9076461 + B3 SINE B2 2 216 0 1 2020 288 344 71 8 chr1 188119967 188120093 -9075339 + Lx8 LINE L1 7151 7284 -189 1 2020 21 0 0 0 chr1 188122020 188122041 -9073391 + AT_rich Low_complexity Low_complexity 1 21 0 1 2020 336 311 0 19 chr1 188122612 188122717 -9072715 + MER20 DNA MER1_type 93 195 -24 1 2020 441 281 104 29 chr1 188122845 188123103 -9072329 + L1MA8 LINE L1 5722 5993 -310 1 2020 272 237 11 0 chr1 188123546 188123653 -9071779 - L1M3 LINE L1 -425 5875 5766 1 2020 355 113 0 0 chr1 188123665 188123718 -9071714 - Lx3A LINE L1 -7 6974 6922 1 2020 479 225 60 60 chr1 188123754 188123905 -9071527 - B3A SINE B2 0 198 48 1 2020 13721 89 11 3 chr1 188123905 188126513 -9068919 - L1_Mus1 LINE L1 0 6567 3936 1 2020 463 291 36 81 chr1 188126505 188126989 -9068443 - L1VL1 LINE L1 -5927 491 61 1 2020 501 234 37 37 chr1 188127009 188127200 -9068232 + L1MA8 LINE L1 6101 6291 0 1 2020 5453 117 38 4 chr1 188127211 188127981 -9067451 + Lx3B LINE L1 6177 6972 -1 2 2020 27 29 0 0 chr1 188129533 188129567 -9065865 + AT_rich Low_complexity Low_complexity 1 34 0 2 2020 807 11 0 0 chr1 188131347 188131439 -9063993 + (GAA)n Simple_repeat Simple_repeat 2 93 0 2 2020 180 0 0 0 chr1 188131873 188131893 -9063539 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 2020 189 0 0 0 chr1 188131896 188131917 -9063515 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2 2020 268 109 14 0 chr1 188131927 188131977 -9063455 - B2_Mm2 SINE B2 -102 114 61 2 2020 207 0 0 0 chr1 188131978 188132001 -9063431 + (T)n Simple_repeat Simple_repeat 1 23 0 2 2020 1373 96 0 17 chr1 188132074 188132255 -9063177 - B2_Mm1t SINE B2 -14 179 2 2 2020 265 318 39 19 chr1 188132570 188132724 -9062708 - L1M5 LINE L1 -382 5791 5635 2 2020 770 228 77 5 chr1 188134787 188134981 -9060451 - MER3 DNA MER1_type 0 209 2 2 2020 239 345 56 56 chr1 188136143 188136269 -9059163 + MIR SINE MIR 23 148 -60 2 2020 355 300 18 0 chr1 188136370 188136480 -9058952 + MER103 DNA DNA 52 163 -3 2 2020 3320 79 2 2 chr1 188137139 188137546 -9057886 + MTB_Mm LTR MaLR 1 407 0 2 2020 683 223 43 14 chr1 188137580 188137721 -9057711 + RSINE1 SINE B4 1 145 -20 2 2020 348 292 80 0 chr1 188137748 188137861 -9057571 - L3 LINE CR1 -192 4297 4176 2 2020 194 191 21 0 chr1 188139233 188139280 -9056152 + CT-rich Low_complexity Low_complexity 3 50 0 2 2020 466 232 0 0 chr1 188140707 188140789 -9054643 - ID4 SINE ID 0 83 2 2 2020 459 0 0 0 chr1 188140793 188140844 -9054588 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2 2020 319 169 76 61 chr1 188140935 188141047 -9054385 - Lx9 LINE L1 -7 7637 7522 2 2020 360 0 0 0 chr1 188141047 188141087 -9054345 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 2020 319 169 76 61 chr1 188141087 188141106 -9054326 - Lx9 LINE L1 -123 7521 7504 2 2020 944 238 54 25 chr1 188141110 188141390 -9054042 - Lx9 LINE L1 -270 7374 7087 2 2020 197 213 128 0 chr1 188142069 188142116 -9053316 - MIRm SINE MIR -44 232 180 2 2020 240 35 0 0 chr1 188142479 188142508 -9052924 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 2020 1133 116 0 0 chr1 188142509 188142656 -9052776 - B1_Mus1 SINE Alu 0 148 2 2 2020 21 0 0 0 chr1 188143278 188143299 -9052133 + AT_rich Low_complexity Low_complexity 1 21 0 2 2020 297 0 0 0 chr1 188143305 188143338 -9052094 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 2020 719 290 6 0 chr1 188143372 188143534 -9051898 - B3A SINE B2 -34 164 2 2 2020 307 286 55 16 chr1 188144050 188144178 -9051254 - L1M5 LINE L1 -531 5709 5577 2 2020 3083 306 90 43 chr1 188144519 188146122 -9049310 - Tigger5 DNA MER2_type -1 2405 728 2 2020 916 334 132 24 chr1 188146131 188146200 -9049232 - Tigger5 DNA MER2_type -1798 608 538 2 2020 2121 141 31 48 chr1 188146200 188146617 -9048815 - RMER17C LTR ERVK 0 410 1 2 2020 916 334 132 24 chr1 188146617 188147087 -9048345 - Tigger5 DNA MER2_type -1869 537 11 2 2020 1251 216 84 54 chr1 188147089 188147465 -9047967 + MTE2a LTR MaLR 24 419 0 2 2020 1116 298 123 12 chr1 188147848 188148282 -9047150 + MLT2B3 LTR ERVL 183 662 -54 2 2020 198 0 0 0 chr1 188148282 188148304 -9047128 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 2020 229 284 10 31 chr1 188148304 188148348 -9047084 + MLT2B3 LTR ERVL 640 682 -35 2 2020 277 140 17 50 chr1 188148475 188148535 -9046897 + Ricksha_c DNA MuDR 846 903 -1145 2 2020 212 233 0 14 chr1 188148571 188148645 -9046787 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 2020 650 261 5 100 chr1 188148645 188148845 -9046587 - B3A SINE B2 -16 182 2 2 2020 250 204 41 0 chr1 188148931 188148980 -9046452 + B4A SINE B4 1 51 -241 2 2020 220 246 49 33 chr1 188148984 188149106 -9046326 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 2 2020 506 326 14 7 chr1 188149142 188149287 -9046145 + B4 SINE B4 71 216 -76 2 2020 309 51 0 0 chr1 188149287 188149326 -9046106 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2 2020 329 203 18 16 chr1 188149587 188149677 -9045755 - B3A SINE B2 -104 91 1 2 2020 296 133 0 0 chr1 188150212 188150257 -9045175 - Lx5 LINE L1 -230 6820 6776 2 2020 235 327 146 34 chr1 188151011 188151394 -9044038 - L1M5 LINE L1 -1313 4833 4408 2 2020 223 217 33 0 chr1 188151841 188151901 -9043531 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2 2020 278 261 197 78 chr1 188151976 188152173 -9043259 - B4A SINE B4 -70 222 1 2 2020 505 262 82 14 chr1 188152182 188152329 -9043103 - ID_B1 SINE B4 -2 222 66 2 2020 630 251 162 42 chr1 188152823 188153014 -9042418 - B3 SINE B2 -2 214 1 2 2020 243 345 24 0 chr1 188153599 188153683 -9041749 - ORR1E LTR MaLR -249 110 25 2 2020 326 314 20 0 chr1 188153907 188154009 -9041423 + PB1D7 SINE Alu 1 104 -16 2 2020 2786 67 10 28 chr1 188154011 188154409 -9041023 + MTB LTR MaLR 10 400 0 2 2020 874 152 0 6 chr1 188154409 188154574 -9040858 + MTB-int LTR MaLR 1 164 -934 2 2020 4059 131 92 15 chr1 188154565 188155318 -9040114 + MTB-int LTR MaLR 313 1123 -135 2 2020 4425 97 38 6 chr1 188155318 188155981 -9039451 - L1_Mur1 LINE L1 -1587 4299 3616 2 2020 3773 110 40 17 chr1 188155980 188156561 -9038871 + Lx3B LINE L1 5601 6194 -779 2 2020 26 64 0 0 chr1 188156956 188157003 -9038429 + AT_rich Low_complexity Low_complexity 1 47 0 2 2020 198 0 0 0 chr1 188157089 188157111 -9038321 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 2020 261 75 0 0 chr1 188157111 188157151 -9038281 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 2020 216 0 0 0 chr1 188157151 188157175 -9038257 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 2020 222 301 0 41 chr1 188157621 188157718 -9037714 + CT-rich Low_complexity Low_complexity 1 93 0 2 2020 583 345 136 13 chr1 188158238 188158555 -9036877 + MLT1B LTR MaLR 10 365 -25 2 2020 25 0 0 0 chr1 188159322 188159347 -9036085 + AT_rich Low_complexity Low_complexity 1 25 0 2 2020 411 113 0 0 chr1 188159560 188159622 -9035810 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 2020 237 390 40 0 chr1 188159825 188159925 -9035507 + ID_B1 SINE B4 73 176 -48 2 2020 305 358 37 10 chr1 188159837 188159950 -9035482 + B1F1 SINE Alu 7 115 -2 2 2020 195 109 17 68 chr1 188160418 188160477 -9034955 + A-rich Low_complexity Low_complexity 1 56 0 2 2020 214 204 56 0 chr1 188160614 188160668 -9034764 + T-rich Low_complexity Low_complexity 3 59 0 2 2020 240 286 20 0 chr1 188161223 188161272 -9034160 - B1F1 SINE Alu -93 56 7 2 2020 216 311 66 0 chr1 188161272 188161284 -9034148 - ID_B1 SINE B4 -87 137 73 2 2020 22 0 0 0 chr1 188161890 188161912 -9033520 + AT_rich Low_complexity Low_complexity 1 22 0 2 2020 567 0 0 0 chr1 188161947 188162010 -9033422 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 2020 357 82 0 0 chr1 188162010 188162058 -9033374 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 2020 434 278 55 16 chr1 188162135 188162263 -9033169 + ORR1E LTR MaLR 9 141 -218 2 2020 747 183 15 4 chr1 188163421 188163698 -9031734 + GA-rich Low_complexity Low_complexity 1 280 0 2 2020 24 0 0 0 chr1 188163864 188163888 -9031544 + AT_rich Low_complexity Low_complexity 1 24 0 2 2020 531 31 0 0 chr1 188163940 188164005 -9031427 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 2020 453 308 75 24 chr1 188164021 188164234 -9031198 - B4A SINE B4 -22 270 47 2 2020 900 175 29 6 chr1 188164245 188164417 -9031015 - B3 SINE B2 -5 211 36 2 2020 2512 88 22 0 chr1 188165475 188165795 -9029637 + ORR1A2 LTR MaLR 1 327 0 2 2020 2678 111 3 3 chr1 188166128 188166506 -9028926 - L1_Mus4 LINE L1 -179 6457 6080 2 2020 1153 115 0 0 chr1 188166496 188166652 -9028780 - Lx LINE L1 -425 6229 6074 2 2020 635 68 0 0 chr1 188166652 188166740 -9028692 + L1_Mus4 LINE L1 6547 6634 -2 2 2020 391 261 52 35 chr1 188167717 188167832 -9027600 - Lx8 LINE L1 -254 7219 7103 2 2020 483 281 24 35 chr1 188168136 188168306 -9027126 - L1MA5 LINE L1 -7 6293 6126 2 2020 231 317 50 14 chr1 188169456 188169613 -9025819 + L2b LINE L2 2949 3107 -268 2 2020 280 417 0 22 chr1 188169924 188170103 -9025329 + G-rich Low_complexity Low_complexity 5 179 0 2 2020 221 384 27 0 chr1 188170026 188170172 -9025260 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 2 2020 202 61 61 0 chr1 188170591 188170624 -9024808 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 2020 843 105 0 0 chr1 188170844 188170977 -9024455 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 2 2020 22 0 0 0 chr1 188172753 188172775 -9022657 + AT_rich Low_complexity Low_complexity 1 22 0 2 2020 330 343 90 33 chr1 188175615 188175947 -9019485 + HAL1 LINE L1 1283 1633 -874 2 2020 467 273 34 140 chr1 188176106 188176354 -9019078 + MTEb LTR MaLR 121 377 -2 2 2020 1608 142 271 0 chr1 188177234 188177544 -9017888 - ORR1B1 LTR MaLR 0 394 1 2 2020 364 163 40 23 chr1 188177981 188178157 -9017275 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 2020 367 173 40 23 chr1 188178193 188178370 -9017062 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 2020 187 328 47 73 chr1 188178740 188178931 -9016501 - L2c LINE L2 -16 3371 3186 2 2020 184 349 105 8 chr1 188179043 188179176 -9016256 + MIRc SINE MIR 49 194 -74 2 2020 296 277 75 0 chr1 188180043 188180137 -9015295 - PB1D10 SINE Alu -8 109 9 2 2020 470 168 66 5 chr1 188180301 188180713 -9014719 + (TCTA)n Simple_repeat Simple_repeat 1 437 0 2 2020 539 302 6 12 chr1 188181309 188181457 -9013975 + RSINE1 SINE B4 2 149 -16 2 2020 222 118 0 0 chr1 188181457 188181491 -9013941 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 2020 539 302 6 12 chr1 188181491 188181503 -9013929 + RSINE1 SINE B4 150 161 -4 2 2020 541 329 36 24 chr1 188182787 188183039 -9012393 + B4A SINE B4 1 255 -37 2 2020 309 51 0 0 chr1 188183047 188183086 -9012346 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 2020 340 284 0 11 chr1 188183111 188183200 -9012232 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 2020 242 209 103 15 chr1 188183352 188183420 -9012012 + L1MC LINE L1 5377 5450 -894 2 2020 229 224 26 26 chr1 188183439 188183517 -9011915 + BC1_Mm scRNA scRNA 22 99 -53 2 2020 406 329 69 29 chr1 188183521 188183696 -9011736 + B3A SINE B2 2 183 -15 3 2020 417 284 203 36 chr1 188184309 188184590 -9010842 + L1ME2z LINE L1 5696 6023 -421 3 2020 1218 261 71 45 chr1 188185289 188185382 -9010050 - Lx8 LINE L1 -10 7463 7378 3 2020 1634 240 34 10 chr1 188185382 188185790 -9009642 - MTD LTR MaLR 0 419 2 3 2020 1218 261 71 45 chr1 188185790 188186162 -9009270 - Lx8 LINE L1 -96 7377 6987 3 2020 545 138 21 0 chr1 188187271 188187365 -9008067 + ORR1C2 LTR MaLR 289 384 0 3 2020 317 239 34 11 chr1 188187440 188187529 -9007903 - MTE2a LTR MaLR -270 109 19 3 2020 19475 109 54 4 chr1 188188008 188192789 -9002643 + L1Md_F LINE L1 299 5589 -297 3 2020 7284 88 4 14 chr1 188192790 188193787 -9001645 + L1Md_F2 LINE L1 5588 6574 -8 3 2020 456 327 88 22 chr1 188193807 188194035 -9001397 + B4A SINE B4 44 286 -6 3 2020 534 151 0 0 chr1 188194044 188194150 -9001282 + (CA)n Simple_repeat Simple_repeat 2 107 0 3 2020 456 19 0 0 chr1 188194150 188194203 -9001229 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 2020 307 271 3 12 chr1 188194922 188195016 -9000416 + MTEb LTR MaLR 276 361 -18 3 2020 305 253 31 173 chr1 188195366 188195557 -8999875 - RSINE1 SINE B4 0 165 2 3 2020 468 208 0 0 chr1 188195672 188195768 -8999664 - B4A SINE B4 -195 97 2 3 2020 274 227 11 33 chr1 188195913 188196004 -8999428 - MTE2b LTR MaLR -13 366 278 3 2020 253 224 26 89 chr1 188196807 188196998 -8998434 + (CACAC)n Simple_repeat Simple_repeat 1 179 0 3 2020 203 167 0 0 chr1 188197675 188197711 -8997721 + G-rich Low_complexity Low_complexity 5 40 0 3 2020 415 276 88 55 chr1 188198287 188198617 -8996815 - RLTR15 LTR ERVK -18 341 1 3 2020 279 405 23 0 chr1 188199637 188199768 -8995664 - MIRb SINE MIR -115 153 20 3 2020 537 121 0 0 chr1 188200767 188200850 -8994582 + (TCC)n Simple_repeat Simple_repeat 1 83 0 3 2020 477 304 58 18 chr1 188201835 188202006 -8993426 - MTD LTR MaLR -223 196 19 3 2020 1173 223 33 14 chr1 188202207 188202480 -8992952 - MTD LTR MaLR -14 405 112 3 2020 447 206 103 0 chr1 188202729 188202826 -8992606 - MTD LTR MaLR -272 147 41 3 2020 194 0 0 37 chr1 188203444 188203471 -8991961 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 2020 883 242 24 5 chr1 188203567 188203775 -8991657 + B3 SINE B2 1 212 -4 3 2020 234 274 204 19 chr1 188205024 188205132 -8990300 + B1F SINE Alu 20 147 -2 3 2020 226 213 0 0 chr1 188207390 188207437 -8987995 + T-rich Low_complexity Low_complexity 4 50 0 3 2020 399 262 113 75 chr1 188207458 188207644 -8987788 - B3A SINE B2 -4 194 2 3 2020 557 324 16 28 chr1 188208893 188209141 -8986291 + B4A SINE B4 34 290 -2 3 2020 228 67 0 0 chr1 188209156 188209186 -8986246 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 2020 387 0 0 0 chr1 188209186 188209228 -8986204 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 2020 712 251 80 34 chr1 188211184 188211423 -8984009 - B4 SINE B4 -1 291 42 3 2020 321 240 139 31 chr1 188211485 188211614 -8983818 + B1F SINE Alu 6 148 -1 3 2020 560 307 86 34 chr1 188211825 188212058 -8983374 + B4A SINE B4 6 250 -42 3 2020 297 0 0 0 chr1 188212058 188212091 -8983341 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 2020 1072 93 0 0 chr1 188212091 188212231 -8983201 - B1_Mus1 SINE Alu -7 141 2 3 2020 372 22 0 0 chr1 188212256 188212301 -8983131 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 2020 782 322 82 30 chr1 188213081 188213223 -8982209 - Lx8 LINE L1 0 7473 7332 3 2020 351 0 0 0 chr1 188213223 188213262 -8982170 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 2020 782 322 82 30 chr1 188213262 188213580 -8981852 - Lx8 LINE L1 -142 7331 6989 3 2020 585 168 0 0 chr1 188215351 188215458 -8979974 + CT-rich Low_complexity Low_complexity 4 110 0 3 2020 1205 112 96 5 chr1 188215484 188215682 -8979750 - Lx3B LINE L1 -4 6969 6754 3 2020 2464 71 19 54 chr1 188215682 188216055 -8979377 + L1_Mur1 LINE L1 4789 5148 -738 3 2020 183 218 0 0 chr1 188216522 188216577 -8978855 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 2020 408 130 0 0 chr1 188217460 188217529 -8977903 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 3 2020 7916 74 3 6 chr1 188217748 188219079 -8976353 + L1_Mus2 LINE L1 5243 6565 -1 3 2021 201 167 0 0 chr1 188219542 188219578 -8975854 + (ATG)n Simple_repeat Simple_repeat 3 38 0 3 2021 421 216 23 0 chr1 188219978 188220066 -8975366 - MTE2a LTR MaLR -37 342 253 3 2021 1152 109 0 0 chr1 188220081 188220302 -8975130 + (TTC)n Simple_repeat Simple_repeat 1 221 0 3 2021 1022 60 98 0 chr1 188220302 188220435 -8974997 - B1_Mm SINE Alu 0 147 2 3 2021 391 245 102 32 chr1 188221746 188221945 -8973487 + MTEa LTR MaLR 163 379 0 3 2021 390 21 0 0 chr1 188222681 188222728 -8972704 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 2021 657 306 59 7 chr1 188222770 188223043 -8972389 - B4A SINE B4 -5 287 1 3 2021 210 150 0 0 chr1 188223333 188223373 -8972059 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 2021 236 271 14 14 chr1 188223374 188223445 -8971987 + (TATG)n Simple_repeat Simple_repeat 1 71 0 3 2021 341 254 42 34 chr1 188224678 188224796 -8970636 - PB1D7 SINE Alu -1 119 1 3 2021 423 0 0 0 chr1 188225834 188225881 -8969551 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 2021 847 234 43 58 chr1 188225967 188226244 -8969188 - B4A SINE B4 -19 273 1 3 2021 2079 273 79 26 chr1 188226742 188227385 -8968047 + Lx8 LINE L1 6661 7337 -136 3 2021 24 32 0 0 chr1 188227541 188227572 -8967860 + AT_rich Low_complexity Low_complexity 1 31 0 3 2021 339 340 0 9 chr1 188228548 188228655 -8966777 + B4 SINE B4 1 106 -186 3 2021 198 0 0 0 chr1 188230372 188230394 -8965038 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 3 2021 362 284 0 10 chr1 188230571 188230674 -8964758 + ID_B1 SINE B4 82 183 -41 3 2021 360 283 0 29 chr1 188232086 188232188 -8963244 - B3 SINE B2 -6 210 112 3 2021 545 276 72 6 chr1 188232195 188232383 -8963049 - B4A SINE B4 -15 277 81 3 2021 22 0 0 0 chr1 188234621 188234643 -8960789 + AT_rich Low_complexity Low_complexity 1 22 0 3 2021 364 320 253 0 chr1 188234942 188235120 -8960312 + ID_B1 SINE B4 2 224 0 3 2021 4404 80 12 13 chr1 188235303 188235901 -8959531 + L1_Mus3 LINE L1 6042 6638 0 3 2021 357 332 73 73 chr1 188236470 188236675 -8958757 - B4A SINE B4 -6 286 82 3 2021 558 79 0 0 chr1 188236821 188236897 -8958535 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 2021 269 235 245 0 chr1 188238136 188238234 -8957198 - Lx8 LINE L1 -252 7221 7100 3 2021 1920 146 14 38 chr1 188239679 188239694 -8955738 - RMER17C LTR ERVK 0 410 396 3 2021 1104 8 0 0 chr1 188239694 188239819 -8955613 + (GAA)n Simple_repeat Simple_repeat 2 126 0 3 2021 1920 146 14 38 chr1 188239819 188240223 -8955209 - RMER17C LTR ERVK -15 395 2 3 2021 326 361 16 37 chr1 188241036 188241223 -8954209 - LTR78 LTR ERV1 -677 627 445 3 2021 228 86 0 0 chr1 188241998 188242033 -8953399 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 3 2021 321 313 126 76 chr1 188242897 188243239 -8952193 + ORR1E LTR MaLR 1 359 0 3 2021 717 88 0 0 chr1 188244734 188244836 -8950596 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 3 2021 423 0 0 0 chr1 188245459 188245506 -8949926 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 2021 227 288 12 12 chr1 188245507 188245567 -8949865 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 3 2021 414 57 0 0 chr1 188245567 188245620 -8949812 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 3 2021 227 288 12 12 chr1 188245620 188245640 -8949792 + (TATATG)n Simple_repeat Simple_repeat 3 22 0 3 2021 292 350 61 0 chr1 188245853 188246016 -8949416 + L2 LINE L2 2765 2937 -482 3 2021 310 206 27 27 chr1 188246351 188246426 -8949006 - ID4 SINE ID -4 79 5 3 2021 26 30 0 0 chr1 188246922 188246955 -8948477 + AT_rich Low_complexity Low_complexity 1 33 0 3 2021 411 78 0 0 chr1 188247639 188247703 -8947729 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 2021 686 261 18 0 chr1 188248920 188249085 -8946347 + ID_B1 SINE B4 10 177 -47 3 2021 778 164 0 19 chr1 188249896 188250058 -8945374 + CT-rich Low_complexity Low_complexity 3 161 0 3 2021 310 119 0 56 chr1 188250579 188250668 -8944764 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 3 2021 1801 167 11 71 chr1 188250992 188251360 -8944072 + Lx2A1 LINE L1 6662 7007 -1 3 2021 2952 229 78 8 chr1 188251372 188252059 -8943373 + RMER1B Other Other 15 1062 -4 3 2021 285 209 0 0 chr1 188252856 188252923 -8942509 + GA-rich Low_complexity Low_complexity 4 70 0 3 2021 226 349 26 44 chr1 188253749 188253863 -8941569 + L2c LINE L2 3257 3368 -19 3 2021 273 222 0 27 chr1 188255717 188255791 -8939641 - MTEb LTR MaLR -22 357 286 3 2021 245 205 91 57 chr1 188255989 188256077 -8939355 - MTEb LTR MaLR -268 91 1 3 2021 21 0 0 0 chr1 188256171 188256192 -8939240 + AT_rich Low_complexity Low_complexity 1 21 0 3 2021 488 319 41 32 chr1 188256208 188256454 -8938978 + MER121 Unknown Unknown 13 260 -152 3 2021 183 42 0 0 chr1 188256455 188256479 -8938953 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 2021 1019 137 0 4 chr1 188256482 188256750 -8938682 + (TTC)n Simple_repeat Simple_repeat 1 266 0 3 2021 246 348 35 21 chr1 188256751 188256892 -8938540 + MER121 Unknown Unknown 270 412 0 3 2021 503 128 0 11 chr1 188258391 188258478 -8936954 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 3 2021 308 205 8 49 chr1 188258498 188258621 -8936811 + GA-rich Low_complexity Low_complexity 4 121 0 3 2021 471 246 3 7 chr1 188259970 188260279 -8935153 + (TG)n Simple_repeat Simple_repeat 1 307 0 3 2021 697 190 0 11 chr1 188260292 188260473 -8934959 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2021 581 313 36 132 chr1 188261805 188262298 -8933134 + MT2A LTR ERVL 3 448 -85 3 2021 259 137 411 0 chr1 188262312 188262385 -8933047 - URR1A DNA MER1_type -123 103 1 3 2021 263 370 42 88 chr1 188262470 188262823 -8932609 + LTR16E2 LTR ERVL 232 568 0 4 2021 343 351 66 74 chr1 188262921 188263192 -8932240 - MLT1J-int LTR MaLR -449 938 670 4 2021 618 304 117 15 chr1 188263813 188264077 -8931355 + B4A SINE B4 2 292 0 4 2021 429 20 0 0 chr1 188264128 188264178 -8931254 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 2021 234 300 120 22 chr1 188265019 188265111 -8930321 + B3 SINE B2 2 102 -114 4 2021 1123 264 131 82 chr1 188265175 188265702 -8929730 + Lx8 LINE L1 6921 7473 0 4 2021 29 0 0 0 chr1 188266133 188266162 -8929270 + AT_rich Low_complexity Low_complexity 1 29 0 4 2021 716 258 40 20 chr1 188267232 188267434 -8927998 - B4 SINE B4 -78 214 9 4 2021 504 274 74 0 chr1 188267530 188267665 -8927767 + RSINE1 SINE B4 3 147 -18 4 2021 441 0 0 0 chr1 188268827 188268876 -8926556 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 2021 760 229 11 37 chr1 188269503 188269574 -8925858 - B4 SINE B4 0 292 224 4 2021 432 55 0 0 chr1 188269574 188269629 -8925803 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 4 2021 760 229 11 37 chr1 188269629 188269747 -8925685 - B4 SINE B4 -69 223 108 4 2021 293 194 16 0 chr1 188269781 188269843 -8925589 - ORR1D2 LTR MaLR -307 63 1 4 2021 1320 261 42 21 chr1 188269846 188270230 -8925202 + Lx8 LINE L1 6312 6703 -770 4 2021 1462 281 112 36 chr1 188270229 188270520 -8924912 + Lx8 LINE L1 6811 7123 -350 4 2021 2247 90 60 17 chr1 188270520 188270872 -8924560 + L1_Mus4 LINE L1 6270 6636 0 4 2021 1462 281 112 36 chr1 188270872 188271196 -8924236 + Lx8 LINE L1 7124 7472 -1 4 2021 530 298 87 50 chr1 188271374 188271674 -8923758 - MLT1A0 LTR MaLR -6 359 49 4 2021 648 194 5 27 chr1 188272015 188272210 -8923222 + G-rich Low_complexity Low_complexity 1 190 0 4 2021 1232 84 0 11 chr1 188272210 188272390 -8923042 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 4 2021 202 158 0 66 chr1 188272390 188272432 -8923000 + G-rich Low_complexity Low_complexity 22 61 0 4 2021 867 156 16 20 chr1 188272424 188272679 -8922753 + GA-rich Low_complexity Low_complexity 1 253 0 4 2021 422 249 200 6 chr1 188273860 188274030 -8921402 - B3 SINE B2 -12 204 2 4 2021 204 40 0 0 chr1 188275663 188275688 -8919744 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 2021 323 333 9 28 chr1 188276646 188276754 -8918678 - MER20 DNA MER1_type -4 215 110 4 2021 365 140 0 21 chr1 188276922 188277017 -8918415 + (TCTG)n Simple_repeat Simple_repeat 2 94 0 4 2021 207 0 0 0 chr1 188277018 188277041 -8918391 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 2021 315 0 0 0 chr1 188277041 188277075 -8918357 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 2021 276 311 237 0 chr1 188277112 188277289 -8918143 - Lx8 LINE L1 -18 7455 7237 4 2021 572 296 64 45 chr1 188277873 188278138 -8917294 + MTD LTR MaLR 6 275 -144 4 2021 326 61 20 0 chr1 188278138 188278187 -8917245 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 2021 650 226 48 18 chr1 188278196 188278311 -8917121 + MTE2a LTR MaLR 202 319 -60 4 2021 405 0 0 0 chr1 188278311 188278356 -8917076 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 2021 650 226 48 18 chr1 188278356 188278407 -8917025 + MTE2a LTR MaLR 320 372 -7 4 2021 216 0 0 0 chr1 188278862 188278886 -8916546 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 2021 757 244 62 38 chr1 188280130 188280339 -8915093 - B3A SINE B2 0 216 3 4 2021 528 272 106 21 chr1 188280370 188280558 -8914874 - B3 SINE B2 -10 206 3 4 2021 437 50 17 0 chr1 188281353 188281413 -8914019 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 2021 495 232 20 55 chr1 188281507 188281653 -8913779 + B1F1 SINE Alu 1 141 -8 4 2021 533 171 0 18 chr1 188281654 188281767 -8913665 + A-rich Low_complexity Low_complexity 5 115 0 4 2021 473 244 15 15 chr1 188282713 188282850 -8912582 + HAL1-2a_MD LINE L1 2332 2468 -556 4 2021 558 0 0 0 chr1 188283286 188283348 -8912084 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 4 2021 749 99 41 8 chr1 188283348 188283470 -8911962 - B1_Mus1 SINE Alu -11 137 12 4 2021 383 229 36 51 chr1 188283350 188283488 -8911944 - ID_B1 SINE B4 -13 211 76 4 2021 237 132 0 0 chr1 188283488 188283526 -8911906 + (T)n Simple_repeat Simple_repeat 1 38 0 4 2021 1291 113 82 0 chr1 188284021 188284215 -8911217 - L1_Mus4 LINE L1 -275 6361 6152 4 2021 1935 75 4 18 chr1 188284215 188284487 -8910945 + L1_Mus4 LINE L1 6363 6630 -6 4 2021 671 193 0 13 chr1 188285093 188285402 -8910030 + CT-rich Low_complexity Low_complexity 1 304 0 4 2021 795 297 66 15 chr1 188285463 188285736 -8909696 - B4 SINE B4 -4 288 2 4 2021 6777 127 40 3 chr1 188286001 188287445 -8907987 - Lx LINE L1 0 6654 5159 4 2021 1927 98 0 4 chr1 188287445 188287712 -8907720 + Lx3_Mus LINE L1 6744 7009 0 4 2021 231 278 48 87 chr1 188288879 188289005 -8906427 + ORR1D2 LTR MaLR 6 126 -244 4 2021 303 292 121 19 chr1 188289563 188289720 -8905712 + LTR40a LTR ERVL 339 511 -8 4 2021 546 321 61 5 chr1 188290388 188290585 -8904847 + B3 SINE B2 8 215 -1 4 2021 600 262 47 55 chr1 188290640 188290894 -8904538 - Zaphod DNA Tip100 -165 3866 3615 4 2021 252 268 106 46 chr1 188290912 188291260 -8904172 - Zaphod DNA Tip100 -3076 955 587 4 2021 506 286 46 60 chr1 188291398 188291614 -8903818 + B3 SINE B2 1 213 -3 4 2021 447 204 9 46 chr1 188291890 188291998 -8903434 + PB1D10 SINE Alu 14 117 0 4 2021 659 281 10 24 chr1 188292212 188292420 -8903012 - B3 SINE B2 -2 214 10 4 2021 204 125 0 0 chr1 188292752 188292784 -8902648 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 2021 408 253 11 0 chr1 188294033 188294120 -8901312 - B3 SINE B2 -12 204 117 4 2021 2133 94 13 0 chr1 188294121 188294439 -8900993 - ORR1A2 LTR MaLR 0 327 6 4 2021 529 212 71 0 chr1 188294439 188294552 -8900880 - B3 SINE B2 -94 122 2 4 2021 510 17 0 0 chr1 188294760 188294819 -8900613 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 4 2021 210 183 56 0 chr1 188294820 188294891 -8900541 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 4 2021 237 318 63 0 chr1 188294908 188294971 -8900461 - ID4_ SINE ID -11 72 6 4 2021 656 271 0 0 chr1 188295025 188295176 -8900256 + ID_B1 SINE B4 21 171 -53 4 2021 225 132 0 0 chr1 188295221 188295259 -8900173 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 4 2021 225 233 0 0 chr1 188295524 188295567 -8899865 + C-rich Low_complexity Low_complexity 1 43 0 4 2021 22 56 0 0 chr1 188295841 188295877 -8899555 + AT_rich Low_complexity Low_complexity 1 36 0 4 2021 1005 217 8 82 chr1 188295983 188296239 -8899193 - B4 SINE B4 -2 290 54 4 2021 1864 273 71 18 chr1 188296489 188297233 -8898199 - L1MD2 LINE L1 -196 6163 5373 4 2021 393 260 186 24 chr1 188297526 188297778 -8897654 - L1MA6 LINE L1 -460 5840 5548 4 2021 418 310 62 16 chr1 188297785 188298028 -8897404 + L1MA6 LINE L1 5954 6207 -93 4 2021 255 284 11 16 chr1 188298159 188298343 -8897089 + GA-rich Low_complexity Low_complexity 1 182 0 4 2021 339 113 0 0 chr1 188298628 188298681 -8896751 + (TTCTG)n Simple_repeat Simple_repeat 5 57 0 4 2021 22 70 0 0 chr1 188299117 188299160 -8896272 + AT_rich Low_complexity Low_complexity 1 43 0 4 2021 3420 190 85 56 chr1 188299306 188300086 -8895346 - RMER1B Other Other -2 1064 263 4 2021 3326 125 133 25 chr1 188300086 188300762 -8894670 + RMER6A LTR ERVK 1 749 -7 4 2021 1271 226 27 0 chr1 188300762 188301019 -8894413 - RMER1B Other Other -801 265 2 4 2021 657 192 52 109 chr1 188301117 188301327 -8894105 - RLTR42 LTR ERVK -41 198 1 4 2021 532 280 159 0 chr1 188301407 188301596 -8893836 - ID_B1 SINE B4 -3 221 3 4 2021 1957 171 7 54 chr1 188301999 188302407 -8893025 - ORR1B1 LTR MaLR 0 394 6 4 2021 1410 77 16 0 chr1 188303321 188303504 -8891928 - B2_Mm2 SINE B2 -8 187 2 4 2021 23 0 0 0 chr1 188303507 188303530 -8891902 + AT_rich Low_complexity Low_complexity 1 23 0 4 2021 624 48 0 0 chr1 188303827 188303911 -8891521 + (GA)n Simple_repeat Simple_repeat 2 85 0 4 2021 220 196 0 0 chr1 188303924 188303970 -8891462 + GA-rich Low_complexity Low_complexity 2 47 0 4 2021 288 0 0 0 chr1 188304221 188304253 -8891179 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 2021 183 100 0 0 chr1 188304773 188304803 -8890629 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 4 2021 233 342 0 13 chr1 188304803 188304880 -8890552 - ID_B1 SINE B4 -11 213 138 4 2021 212 216 0 0 chr1 188305304 188305341 -8890091 - ID4 SINE ID -13 70 34 4 2021 567 96 0 0 chr1 188305347 188305430 -8890002 + (CCTG)n Simple_repeat Simple_repeat 4 86 0 4 2021 549 280 111 61 chr1 188307199 188307576 -8887856 - MER34A LTR ERV1 -8 563 168 4 2021 957 108 0 0 chr1 188308100 188308276 -8887156 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 4 2021 1286 249 83 13 chr1 188308290 188308665 -8886767 + MTD LTR MaLR 5 405 -14 4 2021 387 0 0 0 chr1 188309273 188309316 -8886116 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 2021 344 259 49 0 chr1 188309447 188309528 -8885904 + B1F SINE Alu 14 98 -51 4 2021 249 216 0 0 chr1 188310575 188310663 -8884769 + CT-rich Low_complexity Low_complexity 1 88 0 4 2021 450 0 0 0 chr1 188310675 188310725 -8884707 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 2021 855 42 0 24 chr1 188310847 188310970 -8884462 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 2021 285 329 6 110 chr1 188311079 188311243 -8884189 + B4A SINE B4 1 147 -145 4 2021 343 347 39 21 chr1 188311349 188311582 -8883850 - L1M2 LINE L1 -991 5152 4916 4 2021 261 315 0 83 chr1 188312134 188312255 -8883177 + ID_B1 SINE B4 94 204 -20 4 2021 512 232 59 30 chr1 188313338 188313507 -8881925 - MLT1D LTR MaLR 0 505 332 4 2021 859 282 32 43 chr1 188313542 188313820 -8881612 + Lx8 LINE L1 6101 6375 -1098 4 2021 409 231 90 63 chr1 188313893 188314004 -8881428 - PB1D9 SINE Alu -6 114 1 4 2021 1180 240 117 2 chr1 188314086 188314479 -8880953 - L1M2 LINE L1 -1137 5006 4569 4 2021 474 18 0 0 chr1 188315129 188315184 -8880248 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 2021 425 185 34 0 chr1 188316011 188316130 -8879302 + CT-rich Low_complexity Low_complexity 2 124 0 5 2021 854 60 0 8 chr1 188316214 188316332 -8879100 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 5 2021 183 129 0 0 chr1 188316718 188316749 -8878683 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 2021 751 322 18 18 chr1 188316786 188317064 -8878368 - B4A SINE B4 -13 279 2 5 2021 309 348 0 0 chr1 188318919 188319031 -8876401 + MTEb LTR MaLR 157 268 -111 5 2021 344 261 42 42 chr1 188319382 188319502 -8875930 + MTEb LTR MaLR 260 379 0 5 2021 507 297 131 43 chr1 188319929 188320348 -8875084 + L1M4 LINE L1 4675 5130 -1016 5 2021 248 0 31 0 chr1 188320410 188320442 -8874990 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 5 2021 594 272 78 70 chr1 188320462 188320719 -8874713 + B4 SINE B4 16 274 -18 5 2021 269 200 0 0 chr1 188320697 188320742 -8874690 + RSINE1 SINE B4 108 152 -13 5 2021 1160 125 0 11 chr1 188320872 188321050 -8874382 + B2_Mm2 SINE B2 2 177 -18 5 2021 408 95 12 23 chr1 188321172 188321258 -8874174 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 2021 193 146 42 0 chr1 188321258 188321306 -8874126 + GA-rich Low_complexity Low_complexity 5 54 0 5 2021 233 313 93 26 chr1 188321432 188321583 -8873849 - MIRb SINE MIR -38 230 70 5 2021 455 123 0 12 chr1 188322193 188322275 -8873157 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 2021 348 266 63 11 chr1 188322368 188322463 -8872969 + PB1D10 SINE Alu 10 109 -8 5 2021 976 260 163 17 chr1 188322682 188323190 -8872242 - MTD-int LTR MaLR -652 928 27 5 2021 1000 266 65 25 chr1 188323215 188323374 -8872058 - MTD LTR MaLR 0 419 256 5 2021 2114 99 44 9 chr1 188323374 188323690 -8871742 - ORR1A2 LTR MaLR 0 327 1 5 2021 1000 266 65 25 chr1 188323690 188323885 -8871547 - MTD LTR MaLR -164 255 51 5 2021 388 144 151 19 chr1 188324023 188324129 -8871303 - Lx9 LINE L1 -7 7637 7518 5 2021 603 88 0 0 chr1 188324197 188324288 -8871144 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 2021 180 0 0 0 chr1 188325029 188325049 -8870383 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 2021 259 238 12 24 chr1 188326729 188326811 -8868621 + GA-rich Low_complexity Low_complexity 2 82 0 5 2021 467 0 35 0 chr1 188327071 188327129 -8868303 + (CATAA)n Simple_repeat Simple_repeat 3 62 0 5 2021 1086 135 0 0 chr1 188327224 188327402 -8868030 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 5 2021 829 120 58 7 chr1 188327441 188327717 -8867715 + (TAGA)n Simple_repeat Simple_repeat 1 289 0 5 2021 22 35 0 0 chr1 188327959 188327988 -8867444 + AT_rich Low_complexity Low_complexity 1 29 0 5 2021 468 0 0 0 chr1 188328044 188328096 -8867336 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 2021 414 246 25 76 chr1 188328221 188328379 -8867053 - MLT2C2 LTR ERVL -244 220 71 5 2021 450 159 0 0 chr1 188329695 188329783 -8865649 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 2021 216 356 0 8 chr1 188329787 188329906 -8865526 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 5 2021 450 286 112 6 chr1 188331045 188331214 -8864218 + B4A SINE B4 106 292 0 5 2021 223 196 18 0 chr1 188331361 188331417 -8864015 + A-rich Low_complexity Low_complexity 3 59 0 5 2021 181 336 210 14 chr1 188331614 188331828 -8863604 - L2 LINE L2 -583 2836 2581 5 2021 883 204 98 39 chr1 188332744 188332948 -8862484 + B3 SINE B2 1 216 0 5 2021 22 0 0 0 chr1 188332948 188332970 -8862462 + AT_rich Low_complexity Low_complexity 1 22 0 5 2021 573 272 25 25 chr1 188332978 188333140 -8862292 + RSINE1 SINE B4 4 165 0 5 2021 1201 173 0 65 chr1 188333254 188333483 -8861949 + B3 SINE B2 2 215 -1 5 2021 723 54 0 0 chr1 188333977 188334069 -8861363 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 2021 346 349 24 23 chr1 188335327 188335499 -8859933 + ORR1E LTR MaLR 1 162 -208 5 2021 289 247 70 30 chr1 188335523 188335623 -8859809 + ORR1E LTR MaLR 253 356 -23 5 2021 520 272 27 7 chr1 188335818 188335966 -8859466 - MTE2a LTR MaLR 0 379 229 5 2021 264 280 70 23 chr1 188336213 188336341 -8859091 - MTE2a LTR MaLR -260 159 26 5 2021 22 0 0 0 chr1 188337074 188337096 -8858336 + AT_rich Low_complexity Low_complexity 1 22 0 5 2021 217 155 0 33 chr1 188337524 188337584 -8857848 + GA-rich Low_complexity Low_complexity 3 60 0 5 2021 640 229 61 134 chr1 188337836 188338179 -8857253 - MTE2a LTR MaLR -5 374 57 5 2021 525 282 0 0 chr1 188340541 188340715 -8854717 + (TA)n Simple_repeat Simple_repeat 1 174 0 5 2021 993 299 111 25 chr1 188341643 188341734 -8853698 - MTD LTR MaLR -14 405 316 5 2021 498 61 0 0 chr1 188341734 188341800 -8853632 + (CATA)n Simple_repeat Simple_repeat 4 69 0 5 2021 993 299 111 25 chr1 188341800 188342061 -8853371 - MTD LTR MaLR -104 315 24 5 2021 456 67 0 0 chr1 188342072 188342132 -8853300 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 5 2021 522 0 0 0 chr1 188342141 188342199 -8853233 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 2021 903 203 86 0 chr1 188343672 188343859 -8851573 + B3 SINE B2 1 203 -13 5 2021 585 0 0 0 chr1 188344269 188344334 -8851098 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 2021 699 104 9 0 chr1 188344409 188344515 -8850917 - B2_Mm1t SINE B2 -85 108 2 5 2021 1361 80 6 0 chr1 188344516 188344692 -8850740 - B2_Mm1a SINE B2 -15 178 2 5 2021 222 238 59 12 chr1 188344796 188344881 -8850551 + L3b LINE CR1 94 182 -300 5 2021 2028 298 68 109 chr1 188344950 188345276 -8850156 + Lx5 LINE L1 6174 6452 -598 5 2021 711 35 0 0 chr1 188345276 188345362 -8850070 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 5 2021 2028 298 68 109 chr1 188345362 188345931 -8849501 + Lx5 LINE L1 6453 7032 -18 5 2021 449 311 143 4 chr1 188345955 188346213 -8849219 + MER34A1 LTR ERV1 80 373 -214 5 2021 275 250 0 74 chr1 188346308 188346403 -8849029 + MER34A1 LTR ERV1 477 564 -7 5 2021 288 0 0 0 chr1 188346562 188346594 -8848838 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 2021 351 0 0 0 chr1 188347223 188347262 -8848170 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 2021 241 243 0 39 chr1 188347424 188347501 -8847931 + (TTTG)n Simple_repeat Simple_repeat 3 76 0 5 2021 2237 91 3 0 chr1 188347704 188348023 -8847409 + ORR1A2 LTR MaLR 1 320 -7 5 2021 291 234 0 0 chr1 188349495 188349572 -8845860 + GA-rich Low_complexity Low_complexity 4 80 0 5 2021 415 316 76 50 chr1 188349727 188350004 -8845428 + B4A SINE B4 1 284 -8 5 2022 238 253 0 81 chr1 188350598 188350684 -8844748 - ID4 SINE ID -4 79 1 5 2022 208 100 50 0 chr1 188350861 188350901 -8844531 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 5 2022 348 161 0 0 chr1 188352268 188352330 -8843102 + A-rich Low_complexity Low_complexity 1 62 0 5 2022 730 314 22 14 chr1 188353550 188353828 -8841604 + B4 SINE B4 1 280 -12 5 2022 387 60 0 0 chr1 188353840 188353890 -8841542 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 2022 4328 201 69 6 chr1 188353932 188354919 -8840513 - Lx9 LINE L1 0 7644 6581 5 2022 751 231 123 26 chr1 188354952 188355147 -8840285 + B3 SINE B2 2 215 -1 5 2022 392 261 59 15 chr1 188355791 188355927 -8839505 - MLT1A0 LTR MaLR 0 365 224 5 2022 228 315 27 108 chr1 188355940 188356125 -8839307 - MLT1A0 LTR MaLR -196 178 9 5 2022 237 298 76 8 chr1 188356146 188356278 -8839154 - MLT1A0-int LTR MaLR -14 1721 1581 5 2022 2013 286 80 27 chr1 188357237 188357949 -8837483 - Lx8 LINE L1 -244 7229 6480 5 2022 365 292 19 0 chr1 188358844 188358950 -8836482 + B4A SINE B4 164 271 -21 5 2022 301 311 7 69 chr1 188359874 188360019 -8835413 + B3 SINE B2 2 137 -79 5 2022 901 283 47 60 chr1 188360676 188361041 -8834391 - MLT1A0 LTR MaLR -5 360 1 5 2022 354 298 16 24 chr1 188362350 188362522 -8832910 - MTEa LTR MaLR -8 371 206 5 2022 335 265 24 64 chr1 188362547 188362672 -8832760 - MTEa LTR MaLR -239 120 1 5 2022 401 305 216 5 chr1 188362860 188363272 -8832160 - L1ME4a LINE L1 -271 5853 5355 5 2022 202 317 78 19 chr1 188363276 188363379 -8832053 + L3 LINE CR1 3707 3815 -674 5 2022 442 255 0 10 chr1 188363612 188363711 -8831721 - B4A SINE B4 -2 290 193 5 2022 367 308 52 22 chr1 188363970 188364106 -8831326 - Tigger5 DNA MER2_type -2266 140 1 5 2022 3759 47 0 2 chr1 188365613 188366063 -8829369 - L1Md_F2 LINE L1 -3 6579 6131 5 2022 215 380 18 9 chr1 188367064 188367173 -8828259 - PB1D10 SINE Alu -7 110 1 5 2022 666 331 30 19 chr1 188367494 188367762 -8827670 + B4A SINE B4 9 279 -13 5 2022 253 281 46 46 chr1 188367754 188367862 -8827570 - RMER12 LTR ERVK -489 833 726 5 2022 450 230 92 21 chr1 188368620 188368804 -8826628 + B3A SINE B2 3 203 -13 5 2022 1117 177 19 28 chr1 188369024 188369239 -8826193 - B3 SINE B2 -3 213 1 5 2022 426 108 0 0 chr1 188369347 188369412 -8826020 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 2022 634 161 0 27 chr1 188370230 188370377 -8825055 + CT-rich Low_complexity Low_complexity 3 145 0 5 2022 243 0 0 0 chr1 188371873 188371900 -8823532 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 2022 726 281 58 90 chr1 188373152 188373576 -8821856 - L1MB3 LINE L1 -188 5980 5570 5 2022 280 326 28 33 chr1 188374077 188374258 -8821174 - MER53 DNA hAT -1 192 13 5 2022 201 152 0 0 chr1 188375791 188375824 -8819608 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 2022 717 12 0 0 chr1 188377033 188377115 -8818317 + (GAA)n Simple_repeat Simple_repeat 2 83 0 5 2022 977 239 29 143 chr1 188377741 188378161 -8817271 - MTE2a LTR MaLR -2 377 6 5 2022 1040 228 0 18 chr1 188380040 188380259 -8815173 + B3 SINE B2 2 216 0 5 2022 254 210 63 16 chr1 188380650 188380713 -8814719 - ID4_ SINE ID -16 67 2 5 2022 1428 264 44 27 chr1 188381262 188381584 -8813848 - MTE2b LTR MaLR 0 379 47 5 2022 884 278 85 45 chr1 188381584 188381938 -8813494 - ORR1D2 LTR MaLR -2 368 1 5 2022 1428 264 44 27 chr1 188381938 188381981 -8813451 - MTE2b LTR MaLR -333 46 8 5 2022 195 283 115 16 chr1 188382111 188382172 -8813260 + MER5A DNA MER1_type 1 67 -122 5 2022 874 241 87 16 chr1 188384383 188384636 -8810796 + ORR1D2 LTR MaLR 1 271 -99 5 2022 702 212 53 24 chr1 188385371 188385540 -8809892 + B3A SINE B2 9 182 -16 5 2022 468 0 0 0 chr1 188385565 188385617 -8809815 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 2022 360 0 0 0 chr1 188385617 188385656 -8809776 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 2022 916 290 63 3 chr1 188385921 188386239 -8809193 - MLT1A0 LTR MaLR -1 364 28 6 2022 336 241 7 21 chr1 188386516 188386660 -8808772 + (ATG)n Simple_repeat Simple_repeat 1 142 0 6 2022 21 57 0 0 chr1 188386904 188386939 -8808493 + AT_rich Low_complexity Low_complexity 1 35 0 6 2022 2531 39 24 0 chr1 188387146 188387476 -8807956 + ORR1A1 LTR MaLR 1 338 -8 6 2022 228 316 34 42 chr1 188389276 188389395 -8806037 - MTD LTR MaLR -284 135 18 6 2022 210 387 0 0 chr1 188389424 188389530 -8805902 + (CA)n Simple_repeat Simple_repeat 2 107 0 6 2022 3967 51 0 2 chr1 188389907 188390395 -8805037 - L1Md_F2 LINE L1 0 6582 6096 6 2022 647 244 69 101 chr1 188390498 188390907 -8804525 + Lx7 LINE L1 7295 7692 -4 6 2022 1092 91 0 0 chr1 188391635 188391789 -8803643 + (TTCCC)n Simple_repeat Simple_repeat 3 156 0 6 2022 348 255 9 28 chr1 188394696 188394805 -8800627 - PB1D10 SINE Alu -10 107 1 6 2022 401 293 54 77 chr1 188394927 188395149 -8800283 - B4A SINE B4 -74 218 2 6 2022 265 279 43 103 chr1 188395424 188395540 -8799892 + B1F2 SINE Alu 7 117 -32 6 2022 300 200 0 0 chr1 188395573 188395643 -8799789 + G-rich Low_complexity Low_complexity 4 73 0 6 2022 298 214 14 14 chr1 188397222 188397293 -8798139 - ORR1E LTR MaLR 0 370 300 6 2022 656 223 126 59 chr1 188397644 188397882 -8797550 - ORR1E LTR MaLR -105 254 1 6 2022 201 39 0 0 chr1 188399955 188399981 -8795451 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 6 2022 283 272 103 40 chr1 188400221 188400453 -8794979 - RLTR42-int LTR ERVK -3729 1793 1541 6 2022 753 166 66 0 chr1 188400573 188400724 -8794708 - URR1B DNA MER1_type 0 225 65 6 2022 442 332 77 15 chr1 188400806 188401078 -8794354 + B4A SINE B4 2 290 -2 6 2022 383 289 0 0 chr1 188402553 188402657 -8792775 + PB1D10 SINE Alu 8 111 -6 6 2022 233 29 0 29 chr1 188403713 188403748 -8791684 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 6 2022 287 270 22 11 chr1 188403815 188403905 -8791527 + GA-rich Low_complexity Low_complexity 2 92 0 6 2022 390 257 0 35 chr1 188403986 188404099 -8791333 - PB1D10 SINE Alu -8 109 1 6 2022 192 77 0 0 chr1 188406038 188406064 -8789368 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 2022 187 364 11 11 chr1 188406961 188407050 -8788382 - L2c LINE L2 -26 3361 3273 6 2022 204 97 0 0 chr1 188407494 188407525 -8787907 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 2022 609 40 0 0 chr1 188407534 188407610 -8787822 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 2022 279 0 0 0 chr1 188408813 188408844 -8786588 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 2022 327 235 0 0 chr1 188408870 188408938 -8786494 - MTE2b LTR MaLR -311 68 1 6 2022 255 253 12 35 chr1 188409209 188409295 -8786137 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 6 2022 313 351 151 4 chr1 188409300 188409552 -8785880 - B4A SINE B4 -2 290 2 6 2022 464 17 0 32 chr1 188409949 188410011 -8785421 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 6 2022 501 268 32 16 chr1 188410020 188410145 -8785287 - ID_B1 SINE B4 -24 200 74 6 2022 194 315 112 35 chr1 188411162 188411371 -8784061 - MIR SINE MIR -29 239 10 6 2022 402 21 0 0 chr1 188411877 188411924 -8783508 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 2022 396 177 0 25 chr1 188412293 188412374 -8783058 - RLTR9B LTR ERVK -358 79 1 6 2022 275 255 28 7 chr1 188412457 188412599 -8782833 + (TA)n Simple_repeat Simple_repeat 1 145 0 6 2022 266 258 40 108 chr1 188412901 188413049 -8782383 + MTEa LTR MaLR 47 184 -195 6 2022 414 0 0 0 chr1 188414179 188414225 -8781207 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 2022 31 58 0 0 chr1 188414620 188414672 -8780760 + AT_rich Low_complexity Low_complexity 1 52 0 6 2022 186 227 0 0 chr1 188415038 188415082 -8780350 + GA-rich Low_complexity Low_complexity 1 44 0 6 2022 834 45 0 0 chr1 188415469 188415580 -8779852 + (TC)n Simple_repeat Simple_repeat 2 112 0 6 2022 723 235 74 35 chr1 188415607 188415810 -8779622 - B4A SINE B4 0 292 82 6 2022 38740 31 0 0 chr1 188415813 188422021 -8773411 - L1Md_T LINE L1 0 6585 281 6 2022 213 352 11 0 chr1 188422022 188422113 -8773319 - B4A SINE B4 -195 97 6 6 2022 763 319 122 47 chr1 188422201 188422817 -8772615 - ERVL-E-int LTR ERVL -1069 4598 3937 6 2022 281 47 23 0 chr1 188423741 188423784 -8771648 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 2022 405 0 0 0 chr1 188424181 188424226 -8771206 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 2022 243 0 0 0 chr1 188424226 188424252 -8771180 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 2022 575 288 101 23 chr1 188424271 188424470 -8770962 - B4A SINE B4 -37 255 42 6 2022 2113 333 46 28 chr1 188426234 188427012 -8768420 - RMER15-int LTR ERVL -3577 1422 643 6 2022 396 0 0 0 chr1 188427012 188427056 -8768376 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 2022 2113 333 46 28 chr1 188427056 188427273 -8768159 - RMER15-int LTR ERVL -4357 642 409 6 2022 270 0 0 0 chr1 188427827 188427857 -8767575 + (CCA)n Simple_repeat Simple_repeat 2 31 0 6 2022 321 26 0 0 chr1 188430033 188430071 -8765361 + (TCC)n Simple_repeat Simple_repeat 2 39 0 6 2022 561 125 0 0 chr1 188430062 188430150 -8765282 + (TC)n Simple_repeat Simple_repeat 2 89 0 6 2022 22 35 0 0 chr1 188430364 188430393 -8765039 + AT_rich Low_complexity Low_complexity 1 29 0 6 2022 294 50 0 0 chr1 188431002 188431042 -8764390 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 2022 338 0 24 0 chr1 188431114 188431156 -8764276 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 2022 369 0 0 0 chr1 188431397 188431438 -8763994 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 2022 582 15 0 0 chr1 188431438 188431504 -8763928 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 2022 239 306 42 0 chr1 188431581 188431653 -8763779 - B4A SINE B4 -216 76 2 6 2022 290 254 15 0 chr1 188431653 188431715 -8763717 - PB1D10 SINE Alu -54 63 1 6 2022 216 281 104 0 chr1 188431715 188431746 -8763686 - B4 SINE B4 -205 87 47 6 2022 232 323 20 50 chr1 188432816 188432917 -8762515 + PB1D10 SINE Alu 1 98 -19 6 2022 225 94 0 0 chr1 188432924 188432956 -8762476 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 2022 212 355 22 51 chr1 188433044 188433222 -8762210 + MIRc SINE MIR 43 215 -53 6 2022 225 0 0 0 chr1 188433772 188433797 -8761635 + (C)n Simple_repeat Simple_repeat 1 25 0 6 2022 272 289 54 22 chr1 188434985 188435077 -8760355 - B1F1 SINE Alu -1 148 54 6 2022 1787 193 65 25 chr1 188435081 188435484 -8759948 - MTD LTR MaLR 0 419 1 6 2022 306 73 0 0 chr1 188435707 188435748 -8759684 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 2022 183 80 0 0 chr1 188435749 188435774 -8759658 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 2022 255 125 0 0 chr1 188435774 188435814 -8759618 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 2022 326 260 0 0 chr1 188436328 188436401 -8759031 - B4A SINE B4 -2 290 218 6 2022 363 298 118 72 chr1 188436462 188436595 -8758837 - B4A SINE B4 -60 232 89 6 2022 225 0 0 0 chr1 188436595 188436620 -8758812 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 2022 363 298 118 72 chr1 188436620 188436681 -8758751 - B4A SINE B4 -204 88 29 6 2022 267 79 0 0 chr1 188438425 188438463 -8756969 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 6 2022 255 61 0 0 chr1 188438611 188438644 -8756788 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 2022 414 100 0 0 chr1 188439352 188439412 -8756020 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 2022 398 206 215 0 chr1 188439883 188439990 -8755442 + RSINE1 SINE B4 3 132 -33 6 2022 532 348 14 14 chr1 188440145 188440352 -8755080 - MLT1G3 LTR MaLR -197 398 192 6 2022 924 228 23 14 chr1 188441053 188441267 -8754165 - B3 SINE B2 0 216 1 6 2022 442 308 22 8 chr1 188441571 188441705 -8753727 - B1F SINE Alu -9 140 5 6 2022 211 254 17 0 chr1 188441927 188441986 -8753446 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 2022 1337 107 32 12 chr1 188442930 188443334 -8752098 + (TAGA)n Simple_repeat Simple_repeat 1 411 0 6 2022 247 192 39 0 chr1 188444217 188444269 -8751163 + B1F1 SINE Alu 1 54 -95 6 2022 491 248 50 101 chr1 188444387 188444625 -8750807 - Charlie5 DNA MER1_type -49 2575 2350 6 2022 319 266 65 47 chr1 188444761 188444948 -8750484 + B3A SINE B2 2 198 0 6 2022 869 165 15 25 chr1 188445395 188445694 -8749738 + GA-rich Low_complexity Low_complexity 1 296 0 6 2022 324 0 0 0 chr1 188447441 188447477 -8747955 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 2022 629 290 25 104 chr1 188449553 188449869 -8745563 - B4A SINE B4 0 292 2 6 2022 2920 44 19 8 chr1 188449921 188450291 -8745141 - L1Md_F2 LINE L1 0 6582 6209 6 2022 553 228 33 72 chr1 188450907 188451061 -8744371 - B1F SINE Alu -20 129 8 6 2022 305 271 66 96 chr1 188452436 188452466 -8742966 + MT2B LTR ERVL 133 157 -444 6 2022 680 277 7 0 chr1 188452466 188452614 -8742818 + B1F2 SINE Alu 1 149 0 6 2022 195 42 0 0 chr1 188453854 188453878 -8741554 + (A)n Simple_repeat Simple_repeat 1 24 0 6 2022 1137 254 55 26 chr1 188453890 188454270 -8741162 + Lx9 LINE L1 7206 7596 -48 6 2022 36 23 0 0 chr1 188454278 188454321 -8741111 + AT_rich Low_complexity Low_complexity 1 43 0 6 2022 464 258 149 46 chr1 188455999 188456174 -8739258 - B3A SINE B2 -5 193 1 6 2022 320 256 0 0 chr1 188457485 188457567 -8737865 + ID4 SINE ID 2 83 0 6 2022 846 153 17 6 chr1 188457598 188457775 -8737657 + GA-rich Low_complexity Low_complexity 1 179 0 6 2022 251 118 59 0 chr1 188457853 188457904 -8737528 + GA-rich Low_complexity Low_complexity 3 56 0 7 2022 413 320 14 75 chr1 188459145 188459358 -8736074 + Tigger13a DNA MER2_type 119 318 -453 7 2022 670 292 89 42 chr1 188459418 188459531 -8735901 + L1MB3 LINE L1 5572 5691 -492 7 2022 1723 160 115 9 chr1 188459531 188459878 -8735554 - ORR1C2 LTR MaLR 0 384 1 7 2022 670 292 89 42 chr1 188459878 188460222 -8735210 + L1MB3 LINE L1 5692 6051 -132 7 2022 425 312 38 13 chr1 188460241 188460400 -8735032 + RSINE1 SINE B4 3 165 0 7 2022 393 75 0 0 chr1 188460745 188460798 -8734634 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 2022 521 55 14 0 chr1 188460947 188461020 -8734412 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 2022 600 309 0 14 chr1 188461028 188461169 -8734263 - RSINE1 SINE B4 -16 149 11 7 2022 257 260 101 46 chr1 188462454 188462563 -8732869 - ZP3AR Satellite Satellite -91 121 7 7 2022 232 288 53 132 chr1 188462529 188462681 -8732751 - B1F2 SINE Alu 0 149 10 7 2022 999 68 0 0 chr1 188462949 188463081 -8732351 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 7 2022 251 28 0 27 chr1 188463409 188463446 -8731986 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 7 2022 516 297 84 35 chr1 188463877 188464079 -8731353 - MLT1C LTR MaLR -250 217 6 7 2022 872 105 0 7 chr1 188464900 188465053 -8730379 + (CA)n Simple_repeat Simple_repeat 2 153 0 7 2022 267 284 30 50 chr1 188465769 188465869 -8729563 - MLT1A1 LTR MaLR 0 408 311 7 2022 450 0 0 0 chr1 188466143 188466193 -8729239 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 2022 1855 182 7 143 chr1 188467562 188467933 -8727499 + ORR1B1 LTR MaLR 1 336 -58 7 2022 1211 54 0 7 chr1 188467933 188468082 -8727350 + B1_Mus1 SINE Alu 1 148 0 7 2022 1855 182 7 143 chr1 188468082 188468164 -8727268 + ORR1B1 LTR MaLR 337 391 -3 7 2022 599 224 140 18 chr1 188468408 188468572 -8726860 + B3 SINE B2 1 184 -32 7 2022 446 393 16 5 chr1 188469519 188469703 -8725729 + MIR SINE MIR 5 190 -72 7 2022 252 0 0 0 chr1 188469711 188469739 -8725693 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 2022 396 0 0 0 chr1 188469740 188469784 -8725648 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 2022 537 58 0 0 chr1 188470402 188470471 -8724961 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 2022 1129 93 0 0 chr1 188471005 188471155 -8724277 - B2_Mm2 SINE B2 -45 150 1 7 2022 354 45 0 0 chr1 188471218 188471262 -8724170 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 2022 311 303 0 0 chr1 188472012 188472088 -8723344 + ID4 SINE ID 1 76 -7 7 2022 330 26 0 0 chr1 188472088 188472127 -8723305 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 7 2022 725 207 162 20 chr1 188472399 188472596 -8722836 + RMER4B LTR ERVK 28 252 -333 7 2022 307 169 0 27 chr1 188472626 188472699 -8722733 + C-rich Low_complexity Low_complexity 2 72 0 7 2022 440 235 17 125 chr1 188472705 188472953 -8722479 + RMER4B LTR ERVK 342 569 -16 7 2022 225 315 28 9 chr1 188473244 188473353 -8722079 + GA-rich Low_complexity Low_complexity 1 111 0 7 2022 915 98 0 0 chr1 188474265 188474397 -8721035 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 7 2022 198 0 0 0 chr1 188474966 188474988 -8720444 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 2022 4015 64 6 4 chr1 188475336 188475839 -8719593 - L1_Mus1 LINE L1 0 6567 6064 7 2022 189 0 0 0 chr1 188475960 188475981 -8719451 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 2022 466 305 101 43 chr1 188477927 188478136 -8717296 + MER45C DNA Tip100 1 221 -732 7 2022 210 150 0 0 chr1 188478603 188478643 -8716789 + (CAGAGA)n Simple_repeat Simple_repeat 4 43 0 7 2022 325 164 0 27 chr1 188478681 188478756 -8716676 + CT-rich Low_complexity Low_complexity 2 74 0 7 2022 375 214 14 0 chr1 188478779 188478849 -8716583 - ID4 SINE ID -9 74 4 7 2022 382 316 86 22 chr1 188479522 188479661 -8715771 + B1F1 SINE Alu 2 149 0 7 2022 203 97 31 46 chr1 188479661 188479692 -8715740 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 2022 804 165 75 0 chr1 188479692 188479825 -8715607 + B1_Mus1 SINE Alu 1 143 -5 7 2022 203 97 31 46 chr1 188479825 188479858 -8715574 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 7 2023 195 42 0 0 chr1 188483409 188483433 -8711999 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 2023 2905 142 23 2 chr1 188483438 188483924 -8711508 - Lx LINE L1 -4 6650 6155 7 2023 446 257 9 9 chr1 188483939 188484049 -8711383 - PB1D10 SINE Alu -7 110 1 7 2023 303 307 124 35 chr1 188484134 188484279 -8711153 - HAL1-3A_ME LINE L1 -652 2206 2049 7 2023 551 271 0 0 chr1 188484289 188484418 -8711014 + B3 SINE B2 17 145 -71 7 2023 638 117 9 0 chr1 188484435 188484546 -8710886 + (CATA)n Simple_repeat Simple_repeat 2 113 0 7 2023 1474 199 121 16 chr1 188485093 188485456 -8709976 - MTD LTR MaLR -1 418 18 7 2023 1068 69 0 0 chr1 188485757 188485888 -8709544 + B1_Mus2 SINE Alu 2 132 -15 7 2023 563 219 44 0 chr1 188486550 188486687 -8708745 - B1_Mur1 SINE Alu -5 144 2 7 2023 1876 194 58 11 chr1 188488173 188488554 -8706878 - MTB_Mm LTR MaLR -2 405 7 7 2023 1988 145 30 70 chr1 188488896 188489071 -8706361 + ORR1C2 LTR MaLR 1 171 -213 7 2023 270 0 0 0 chr1 188489071 188489101 -8706331 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 7 2023 1988 145 30 70 chr1 188489101 188489325 -8706107 + ORR1C2 LTR MaLR 172 384 0 7 2023 258 287 34 11 chr1 188489703 188489791 -8705641 + GA-rich Low_complexity Low_complexity 2 91 0 7 2023 291 192 83 46 chr1 188489853 188489962 -8705470 - Lx4B LINE L1 0 7058 6946 7 2023 590 291 143 0 chr1 188490241 188490485 -8704947 + B4A SINE B4 1 279 -13 7 2023 243 261 14 14 chr1 188490498 188490568 -8704864 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 2023 292 309 197 8 chr1 188492884 188493011 -8702421 + RSINE1 SINE B4 8 158 -7 7 2023 495 0 0 0 chr1 188493011 188493066 -8702366 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 2023 223 264 155 27 chr1 188494137 188494286 -8701146 - MIRm SINE MIR -59 209 30 7 2023 251 195 0 0 chr1 188494674 188494715 -8700717 - MIRm SINE MIR -117 159 119 7 2023 205 176 0 0 chr1 188494966 188495009 -8700423 - MIRc SINE MIR -161 101 59 7 2023 422 250 83 0 chr1 188495081 188495189 -8700243 + B3A SINE B2 31 147 -51 7 2023 378 42 0 0 chr1 188495203 188495251 -8700181 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 2023 311 274 0 0 chr1 188495549 188495622 -8699810 - ID4 SINE ID -9 74 2 7 2023 459 0 0 0 chr1 188496205 188496256 -8699176 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 2023 309 116 0 0 chr1 188497583 188497626 -8697806 + HAL1-3A_ME LINE L1 1976 2018 -840 7 2023 512 258 52 26 chr1 188497743 188497898 -8697534 - RSINE1 SINE B4 -4 161 3 7 2023 296 256 54 22 chr1 188497993 188498085 -8697347 + MIRc SINE MIR 19 113 -155 7 2023 435 19 0 0 chr1 188498858 188498910 -8696522 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 2023 228 301 108 0 chr1 188499169 188499262 -8696170 + MIRc SINE MIR 53 155 -113 7 2023 414 0 0 0 chr1 188499568 188499614 -8695818 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 2023 324 0 0 0 chr1 188500094 188500130 -8695302 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1 2023 207 0 0 0 chr1 188500485 188500508 -8694924 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 2023 433 265 134 87 chr1 188501528 188501805 -8693627 + B4A SINE B4 1 290 -2 3 2023 225 211 0 0 chr1 188501816 188501873 -8693559 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 2023 227 266 118 70 chr1 188502054 188502240 -8693192 - L1MB1 LINE L1 -51 6117 5923 5 2023 24 0 0 0 chr1 188502943 188502967 -8692465 + AT_rich Low_complexity Low_complexity 1 24 0 6 2023 927 301 63 15 chr1 188503378 188503712 -8691720 - L1_Mur3 LINE L1 -1289 4591 4242 7 2023 968 299 87 22 chr1 188503725 188504176 -8691256 + Lx8 LINE L1 6777 7256 -217 8 2023 25 0 0 0 chr1 188504404 188504429 -8691003 + AT_rich Low_complexity Low_complexity 1 25 0 9 2023 180 111 0 0 chr1 188504638 188504665 -8690767 - L2a LINE L2 -6 3420 3394 1 2023 191 78 58 19 chr1 188504849 188504901 -8690531 + A-rich Low_complexity Low_complexity 2 55 0 1 2023 262 333 45 45 chr1 188505287 188505441 -8689991 + MIRb SINE MIR 18 171 -91 1 2023 402 296 91 6 chr1 188505757 188505884 -8689548 - B4 SINE B4 -151 141 9 1 2023 193 292 127 42 chr1 188507874 188507992 -8687440 - L3 LINE CR1 -1385 3104 2977 1 2023 1344 247 137 3 chr1 188508316 188508673 -8686759 + MTD LTR MaLR 1 405 -14 1 2023 364 268 194 16 chr1 188509235 188509364 -8686068 + RSINE1 SINE B4 1 152 -13 1 2023 196 307 197 69 chr1 188509521 188509825 -8685607 + L2 LINE L2 2737 3079 -340 1 2023 715 237 87 67 chr1 188510671 188510879 -8684553 + B3 SINE B2 1 212 -4 1 2023 804 239 128 111 chr1 188511464 188511654 -8683778 - B3 SINE B2 0 216 2 1 2023 558 218 176 7 chr1 188511736 188511884 -8683548 + RMER30 DNA MER1_type 5 177 -25 2 2023 377 252 274 0 chr1 188511770 188511905 -8683527 - Charlie12 DNA MER1_type -2700 173 2 2 2023 582 15 0 0 chr1 188511959 188512026 -8683406 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 2023 666 258 46 0 chr1 188512270 188512421 -8683011 - B4 SINE B4 -126 166 9 2 2023 354 110 27 27 chr1 188512968 188513043 -8682389 + GA-rich Low_complexity Low_complexity 2 76 0 2 2023 1067 134 6 0 chr1 188513043 188513222 -8682210 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 2023 194 81 27 0 chr1 188513586 188513623 -8681809 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2 2023 459 0 0 0 chr1 188515477 188515528 -8679904 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 2023 182 338 14 29 chr1 188517243 188517313 -8678119 - MER5A DNA MER1_type -1 188 120 2 2023 668 284 53 6 chr1 188517474 188517620 -8677812 + B3 SINE B2 20 167 -49 2 2023 272 113 0 36 chr1 188517620 188517675 -8677757 + (CATG)n Simple_repeat Simple_repeat 4 56 0 3 2023 668 284 53 6 chr1 188517675 188517698 -8677734 + B3 SINE B2 168 197 -19 2 2023 603 0 0 0 chr1 188518704 188518771 -8676661 + (GAA)n Simple_repeat Simple_repeat 1 67 0 3 2023 314 340 75 6 chr1 188519494 188519654 -8675778 + MER121 Unknown Unknown 39 209 -203 3 2023 493 248 88 0 chr1 188520854 188520979 -8674453 + B1F2 SINE Alu 12 147 -2 3 2023 238 266 0 0 chr1 188521056 188521117 -8674315 - L2b LINE L2 -3 3384 3323 3 2023 197 37 0 155 chr1 188522225 188522354 -8673078 + (ACCTG)n Simple_repeat Simple_repeat 2 110 0 3 2023 1358 87 11 0 chr1 188523459 188523642 -8671790 + B2_Mm1t SINE B2 1 185 -8 3 2023 25 0 0 0 chr1 188523659 188523684 -8671748 + AT_rich Low_complexity Low_complexity 1 25 0 3 2023 480 306 44 61 chr1 188524373 188524554 -8670878 - MER20 DNA MER1_type -3 216 39 3 2023 1299 13 0 0 chr1 188525712 188525861 -8669571 + (TCTCCC)n Simple_repeat Simple_repeat 6 154 0 3 2023 508 65 0 25 chr1 188526047 188526126 -8669306 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 2023 504 86 0 0 chr1 188527141 188527211 -8668221 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 2023 33 0 0 0 chr1 188527346 188527379 -8668053 + AT_rich Low_complexity Low_complexity 1 33 0 4 2023 198 246 0 0 chr1 188529194 188529255 -8666177 + (CGTG)n Simple_repeat Simple_repeat 4 64 0 4 2023 540 0 0 0 chr1 188530204 188530264 -8665168 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 2023 197 255 19 19 chr1 188530950 188531002 -8664430 - MIR SINE MIR -109 153 102 4 2023 24 0 0 0 chr1 188532933 188532957 -8662475 + GC_rich Low_complexity Low_complexity 1 24 0 4 2023 300 266 242 0 chr1 188533057 188533181 -8662251 - RSINE1 SINE B4 -8 157 4 4 2023 1027 233 80 23 chr1 188533334 188533598 -8661834 + B4A SINE B4 10 288 -4 4 2023 208 346 0 19 chr1 188533627 188533733 -8661699 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 2023 298 349 0 20 chr1 188533759 188533908 -8661524 + (CA)n Simple_repeat Simple_repeat 1 146 0 4 2023 280 354 0 20 chr1 188533934 188534081 -8661351 + (CA)n Simple_repeat Simple_repeat 1 144 0 4 2023 207 333 9 19 chr1 188534107 188534214 -8661218 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 2023 307 329 13 19 chr1 188534237 188534392 -8661040 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 2023 210 71 0 0 chr1 188534419 188534447 -8660985 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 2023 416 200 12 0 chr1 188535037 188535122 -8660310 - B4 SINE B4 -206 86 1 5 2023 354 268 109 59 chr1 188535942 188536061 -8659371 + RSINE1 SINE B4 2 126 -39 5 2023 372 22 0 0 chr1 188536062 188536107 -8659325 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 2023 345 292 80 40 chr1 188536246 188536371 -8659061 + RSINE1 SINE B4 3 132 -33 5 2023 322 284 199 16 chr1 188537077 188537200 -8658232 + ID_B1 SINE B4 1 131 -93 5 2023 504 0 0 0 chr1 188537200 188537256 -8658176 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 2023 322 284 199 16 chr1 188537256 188537318 -8658114 + ID_B1 SINE B4 132 219 -5 5 2023 578 293 145 82 chr1 188537847 188538431 -8657001 - Tigger7 DNA MER2_type -2 548 3 5 2023 605 205 234 100 chr1 188540035 188540355 -8655077 - ORR1D2 LTR MaLR -6 364 2 5 2023 181 279 48 32 chr1 188540810 188540873 -8654559 + L4 LINE RTE 1022 1085 -944 5 2023 520 285 111 25 chr1 188541417 188541615 -8653817 - B4 SINE B4 -32 260 46 5 2023 639 242 161 0 chr1 188541851 188542037 -8653395 + B3 SINE B2 1 216 0 6 2023 457 246 54 18 chr1 188542121 188542233 -8653199 + PB1 SINE Alu 6 121 -6 6 2023 218 347 85 39 chr1 188542233 188542250 -8653182 + B4A SINE B4 91 225 -67 6 2023 23 0 0 0 chr1 188542745 188542768 -8652664 + AT_rich Low_complexity Low_complexity 1 23 0 6 2023 581 181 298 12 chr1 188542804 188542972 -8652460 - B3 SINE B2 0 216 1 6 2023 366 283 53 30 chr1 188543313 188543444 -8651988 + B4 SINE B4 11 144 -148 6 2023 414 0 0 0 chr1 188543467 188543513 -8651919 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 2023 813 201 85 21 chr1 188543651 188543839 -8651593 + B3 SINE B2 1 200 -16 6 2023 544 248 21 42 chr1 188546618 188546761 -8648671 - B1F SINE Alu -9 140 1 6 2023 539 289 35 59 chr1 188548129 188548331 -8647101 - ID_B1 SINE B4 -20 204 8 6 2023 361 294 27 18 chr1 188549594 188549705 -8645727 + PB1D10 SINE Alu 5 116 -1 7 2023 690 122 0 0 chr1 188549824 188549931 -8645501 + (GA)n Simple_repeat Simple_repeat 2 108 0 7 2023 266 298 105 13 chr1 188550618 188550771 -8644661 + L1MC4 LINE L1 6812 6978 -1064 7 2023 29 70 0 0 chr1 188552359 188552416 -8643016 + AT_rich Low_complexity Low_complexity 1 57 0 7 2023 2364 123 35 5 chr1 188552762 188553129 -8642303 + ORR1B1 LTR MaLR 8 385 -9 7 2023 186 103 0 0 chr1 188553135 188553164 -8642268 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 2023 272 335 77 24 chr1 188553456 188553624 -8641808 + B4A SINE B4 105 281 -11 7 2023 307 233 132 41 chr1 188557216 188557337 -8638095 + L1MA6 LINE L1 4551 4682 -1461 7 2023 895 241 189 58 chr1 188558251 188558784 -8636648 + L1MA6 LINE L1 5654 6256 -44 7 2023 234 0 0 0 chr1 188559092 188559118 -8636314 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 2023 404 259 19 0 chr1 188559251 188559359 -8636073 - PB1D9 SINE Alu -5 115 6 7 2023 726 168 0 34 chr1 188560773 188560921 -8634511 - B1_Mus1 SINE Alu 0 148 6 8 2023 1270 68 39 39 chr1 188562059 188562241 -8633191 + B2_Mm2 SINE B2 2 183 -12 8 2023 223 288 0 0 chr1 188563482 188563548 -8631884 + CT-rich Low_complexity Low_complexity 5 70 0 8 2023 721 11 21 11 chr1 188564190 188564284 -8631148 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 8 2023 837 110 0 0 chr1 188564762 188564889 -8630543 + (GGA)n Simple_repeat Simple_repeat 1 127 0 8 2023 387 0 0 0 chr1 188565518 188565561 -8629871 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 2023 395 232 30 10 chr1 188567436 188567536 -8627896 + B1F SINE Alu 43 144 -5 8 2023 626 200 55 109 chr1 188567541 188567743 -8627689 + B3A SINE B2 2 192 -6 8 2023 248 280 40 0 chr1 188567758 188567833 -8627599 + B4A SINE B4 6 83 -209 8 2023 420 20 0 0 chr1 188567997 188568046 -8627386 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 2023 276 324 32 44 chr1 188568469 188568718 -8626714 + L1_Mur1 LINE L1 5050 5295 -591 9 2023 305 237 87 52 chr1 188568716 188568731 -8626701 + L1M2 LINE L1 5265 5279 -1021 9 2023 1158 62 0 14 chr1 188568731 188568879 -8626553 + B1_Mus2 SINE Alu 1 146 -1 9 2023 350 222 64 58 chr1 188568879 188569094 -8626338 + L1M2 LINE L1 5280 5503 -797 9 2023 282 267 58 0 chr1 188569453 188569539 -8625893 + L1M2 LINE L1 5677 5767 -524 9 2023 411 286 84 12 chr1 188570258 188570424 -8625008 + B3A SINE B2 21 198 0 9 2023 346 276 70 47 chr1 188570422 188570551 -8624881 + RSINE1 SINE B4 3 134 -31 9 2023 26 30 0 0 chr1 188571826 188571859 -8623573 + AT_rich Low_complexity Low_complexity 1 33 0 9 2023 478 43 14 14 chr1 188573559 188573629 -8621803 + (TTG)n Simple_repeat Simple_repeat 2 71 0 9 2023 1177 61 0 7 chr1 188574108 188574256 -8621176 + B1_Mus2 SINE Alu 1 147 0 9 2023 375 78 0 0 chr1 188574323 188574374 -8621058 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 2023 1803 153 27 12 chr1 188574615 188574945 -8620487 + RLTR14 LTR ERV1 1 335 -47 9 2023 1086 86 0 0 chr1 188574965 188575104 -8620328 - B1_Mus1 SINE Alu -9 139 1 1 2023 299 161 65 0 chr1 188575104 188575166 -8620266 + RLTR14 LTR ERV1 317 382 0 9 2023 518 240 87 29 chr1 188575388 188575560 -8619872 - B3A SINE B2 -16 182 1 1 2023 490 293 139 17 chr1 188575586 188575874 -8619558 - Lx8 LINE L1 -3 7470 7148 1 2023 271 310 26 40 chr1 188575887 188576038 -8619394 - B1F1 SINE Alu 0 149 1 1 2023 312 285 127 40 chr1 188576240 188576390 -8619042 - MIRb SINE MIR -64 204 42 1 2023 243 275 75 0 chr1 188576557 188576637 -8618795 + Lx7 LINE L1 7253 7338 -358 1 2023 580 178 195 60 chr1 188576622 188576807 -8618625 + Lx7 LINE L1 7487 7696 0 1 2023 331 154 154 0 chr1 188576937 188577015 -8618417 + ORR1D2 LTR MaLR 277 366 -4 1 2023 538 303 10 93 chr1 188577171 188577375 -8618057 - ID_B1 SINE B4 -34 190 4 1 2023 555 313 33 0 chr1 188577473 188577655 -8617777 - B3A SINE B2 -10 188 1 1 2023 181 254 31 16 chr1 188578356 188578420 -8617012 - L2a LINE L2 -3 3423 3359 1 2023 252 301 93 5 chr1 188580514 188580742 -8614690 - L1M3e LINE L1 -4831 2206 1951 1 2023 3237 151 16 10 chr1 188580806 188581381 -8614051 + RLTR20A2 LTR ERVK 1 578 0 1 2023 1289 261 56 39 chr1 188581381 188581486 -8613946 + MTD LTR MaLR 2 115 -304 1 2023 279 0 0 0 chr1 188581486 188581517 -8613915 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 2023 1289 261 56 39 chr1 188581517 188581822 -8613610 + MTD LTR MaLR 116 418 -1 1 2023 340 253 78 108 chr1 188581822 188582009 -8613423 + MTD-int LTR MaLR 1 183 -1397 1 2023 284 331 89 0 chr1 188582009 188582133 -8613299 + MTE2a LTR MaLR 2 136 -243 1 2023 306 298 15 22 chr1 188582253 188582387 -8613045 - HAL1-2a_MD LINE L1 -537 2487 2355 1 2023 271 335 5 24 chr1 188582393 188582559 -8612873 + MT2A LTR ERVL 226 436 -97 1 2023 1389 159 18 0 chr1 188582706 188582926 -8612506 - URR1A DNA MER1_type -2 224 1 1 2023 388 309 33 7 chr1 188583739 188583889 -8611543 - MLT1C LTR MaLR -313 154 1 1 2023 1072 115 0 0 chr1 188584493 188584641 -8610791 + B1_Mus1 SINE Alu 1 148 0 1 2023 1619 245 89 28 chr1 188584827 188585178 -8610254 - RMER5 LTR ERV1 0 534 156 1 2023 876 274 145 6 chr1 188585178 188585509 -8609923 + MTE2a LTR MaLR 3 379 0 1 2023 1619 245 89 28 chr1 188585509 188585660 -8609772 - RMER5 LTR ERV1 -379 155 1 1 2023 241 309 25 0 chr1 188585945 188586026 -8609406 - B4A SINE B4 -125 167 85 1 2023 654 226 0 0 chr1 188586068 188586192 -8609240 - B1_Mur1 SINE Alu -13 136 13 1 2023 1238 48 0 0 chr1 188587662 188587808 -8607624 - B1_Mm SINE Alu 0 147 2 1 2023 3591 105 14 4 chr1 188587865 188588419 -8607013 - MT2B2 LTR ERVL 0 584 25 1 2023 199 165 31 52 chr1 188588440 188588536 -8606896 + (TTTA)n Simple_repeat Simple_repeat 2 95 0 1 2023 689 281 71 36 chr1 188588579 188588859 -8606573 - B4A SINE B4 -2 290 1 1 2023 23 0 0 0 chr1 188590604 188590627 -8604805 + AT_rich Low_complexity Low_complexity 1 23 0 1 2023 1817 45 0 0 chr1 188590865 188591088 -8604344 + L1Md_A LINE L1 6360 6582 0 1 2023 34 0 0 0 chr1 188591088 188591122 -8604310 + AT_rich Low_complexity Low_complexity 1 34 0 1 2023 307 278 47 105 chr1 188591648 188591905 -8603527 + RMER5 LTR ERV1 1 242 -292 1 2023 489 222 37 0 chr1 188591960 188592068 -8603364 - ID_B1 SINE B4 0 224 113 1 2023 22 0 0 0 chr1 188592209 188592231 -8603201 + AT_rich Low_complexity Low_complexity 1 22 0 1 2023 912 221 20 0 chr1 188592406 188592605 -8602827 - B3 SINE B2 -6 210 8 1 2023 1464 75 16 0 chr1 188593103 188593289 -8602143 - B2_Mm2 SINE B2 -6 189 1 1 2023 288 262 57 19 chr1 188594053 188594158 -8601274 + PB1D10 SINE Alu 9 117 0 1 2023 277 380 0 0 chr1 188594305 188594413 -8601019 + PB1D10 SINE Alu 1 108 -9 1 2023 904 230 25 0 chr1 188594657 188594857 -8600575 - B3 SINE B2 -6 210 6 1 2023 236 262 221 8 chr1 188594982 188595109 -8600323 - L1M2 LINE L1 -464 5836 5683 1 2023 1190 43 0 0 chr1 188595131 188595270 -8600162 + B1_Mus1 SINE Alu 2 140 -8 1 2023 306 0 0 0 chr1 188595270 188595304 -8600128 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 2023 414 292 18 0 chr1 188595438 188595551 -8599881 - PB1D10 SINE Alu -2 115 1 1 2023 1375 75 37 11 chr1 188595634 188595822 -8599610 + B2_Mm2 SINE B2 2 194 -1 1 2023 8657 85 7 18 chr1 188597324 188597912 -8597520 - L1_Mur1 LINE L1 -196 5690 5116 1 2023 1478 59 5 16 chr1 188597912 188598101 -8597331 - B2_Mm1t SINE B2 -6 187 1 1 2023 8657 85 7 18 chr1 188598101 188598731 -8596701 - L1_Mur1 LINE L1 -771 5115 4485 1 2023 9076 80 48 10 chr1 188598730 188600011 -8595421 + Lx3_Mus LINE L1 5679 7008 -1 1 2023 592 274 45 11 chr1 188600115 188600292 -8595140 + B3A SINE B2 16 198 0 1 2023 270 258 0 0 chr1 188600312 188600374 -8595058 + B3A SINE B2 1 62 -136 1 2023 769 264 6 0 chr1 188600672 188600854 -8594578 - B3A SINE B2 -11 187 5 1 2023 439 277 50 14 chr1 188603060 188603199 -8592233 - B1F1 SINE Alu -1 148 5 1 2023 36 62 0 0 chr1 188603293 188603357 -8592075 + AT_rich Low_complexity Low_complexity 1 64 0 1 2023 200 362 0 0 chr1 188603594 188603663 -8591769 + CT-rich Low_complexity Low_complexity 4 72 0 1 2023 396 276 161 63 chr1 188605049 188605304 -8590128 + B4A SINE B4 2 281 -11 1 2023 255 61 0 0 chr1 188605342 188605375 -8590057 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 2023 24 32 0 0 chr1 188606836 188606867 -8588565 + AT_rich Low_complexity Low_complexity 1 31 0 1 2023 1354 116 365 27 chr1 188607740 188608033 -8587399 + ORR1B1 LTR MaLR 1 392 -2 1 2023 288 319 67 16 chr1 188608440 188608634 -8586798 - L1M5 LINE L1 -618 5826 5623 1 2023 545 296 0 7 chr1 188609186 188609329 -8586103 - RSINE1 SINE B4 -17 148 7 1 2023 218 352 49 21 chr1 188609985 188610127 -8585305 - MIRc SINE MIR -104 164 19 1 2023 323 264 85 31 chr1 188610251 188610380 -8585052 - MLT1H2 LTR MaLR -339 150 15 1 2023 660 59 0 0 chr1 188610441 188610526 -8584906 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 1 2023 5914 225 78 70 chr1 188610559 188610889 -8584543 - Lx7 LINE L1 -40 7656 7353 1 2023 1096 71 0 0 chr1 188610889 188611029 -8584403 + B1_Mus1 SINE Alu 1 140 -8 1 2023 5914 225 78 70 chr1 188611029 188612322 -8583110 - Lx7 LINE L1 -344 7352 6019 1 2023 328 291 91 42 chr1 188612501 188612513 -8582919 - MLT1A0 LTR MaLR -192 173 162 1 2023 640 64 21 0 chr1 188612513 188612607 -8582825 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 252 328 291 91 42 chr1 188612607 188612759 -8582673 - MLT1A0 LTR MaLR -204 161 1 1 2024 408 20 0 0 chr1 188613274 188613323 -8582109 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 2024 1088 185 47 8 chr1 188613414 188613649 -8581783 - RLTR20D LTR ERVK -2 566 323 1 2024 519 282 6 35 chr1 188613727 188613896 -8581536 - RSINE1 SINE B4 0 165 2 1 2024 983 273 33 7 chr1 188613917 188614190 -8581242 - MTEa LTR MaLR 0 379 100 1 2024 375 241 129 21 chr1 188614182 188614322 -8581110 - MTEb LTR MaLR -224 155 1 1 2024 22 0 0 0 chr1 188614743 188614765 -8580667 + AT_rich Low_complexity Low_complexity 1 22 0 1 2024 836 244 33 33 chr1 188614772 188614954 -8580478 + B3A SINE B2 1 182 -16 1 2024 564 252 0 0 chr1 188615721 188616041 -8579391 + (TG)n Simple_repeat Simple_repeat 1 320 0 1 2024 951 275 16 89 chr1 188616043 188616358 -8579074 - B4A SINE B4 0 292 1 1 2024 256 270 168 34 chr1 188616561 188616680 -8578752 - RSINE1 SINE B4 -29 136 2 1 2024 264 162 28 42 chr1 188617045 188617116 -8578316 + (GGGTG)n Simple_repeat Simple_repeat 2 71 0 1 2024 198 0 0 0 chr1 188617409 188617431 -8578001 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 1 2024 1567 279 41 65 chr1 188617852 188618352 -8577080 - Lx8 LINE L1 -5 7468 6981 1 2024 2471 89 0 0 chr1 188618352 188618678 -8576754 + ORR1A3 LTR MaLR 1 326 0 1 2024 1567 279 41 65 chr1 188618678 188618764 -8576668 - Lx8 LINE L1 -493 6980 6896 1 2024 868 240 85 74 chr1 188618983 188619348 -8576084 - MTEb LTR MaLR -10 369 1 1 2024 228 67 0 0 chr1 188619470 188619500 -8575932 + (CAT)n Simple_repeat Simple_repeat 2 31 0 1 2024 189 0 0 0 chr1 188620102 188620123 -8575309 + (T)n Simple_repeat Simple_repeat 1 21 0 1 2024 1152 229 100 0 chr1 188620362 188620672 -8574760 - ORR1D1 LTR MaLR -4 370 30 1 2024 244 294 23 23 chr1 188620841 188620928 -8574504 + GA-rich Low_complexity Low_complexity 1 87 0 1 2024 186 128 0 0 chr1 188621383 188621422 -8574010 + (C)n Simple_repeat Simple_repeat 1 39 0 1 2024 313 331 60 23 chr1 188622474 188622607 -8572825 - RSINE1 SINE B4 -22 143 6 1 2024 418 292 22 14 chr1 188622633 188622772 -8572660 - B1F SINE Alu 0 149 10 1 2024 300 248 0 0 chr1 188622962 188623063 -8572369 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 2024 216 200 0 0 chr1 188623276 188623326 -8572106 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 2024 302 250 0 22 chr1 188623677 188623767 -8571665 - PB1D10 SINE Alu -2 115 28 1 2024 23 0 0 0 chr1 188623804 188623827 -8571605 + AT_rich Low_complexity Low_complexity 1 23 0 1 2024 462 125 0 0 chr1 188625414 188625494 -8569938 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 2024 189 74 0 0 chr1 188625494 188625521 -8569911 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 2024 615 281 136 36 chr1 188625534 188625785 -8569647 - B4A SINE B4 -16 276 1 1 2024 198 0 0 0 chr1 188626301 188626323 -8569109 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 2024 651 261 12 33 chr1 188626332 188626539 -8568893 - B4 SINE B4 -6 286 83 1 2024 201 147 0 0 chr1 188626548 188626582 -8568850 + (T)n Simple_repeat Simple_repeat 1 34 0 1 2024 1396 34 79 0 chr1 188626583 188626761 -8568671 - B2_Mm1t SINE B2 0 193 2 1 2024 443 234 9 9 chr1 188626895 188627003 -8568429 + B3 SINE B2 103 210 -6 1 2024 326 204 9 0 chr1 188627200 188627308 -8568124 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 2 2024 29 0 0 0 chr1 188627891 188627920 -8567512 + AT_rich Low_complexity Low_complexity 1 29 0 2 2024 1297 102 16 0 chr1 188627961 188628147 -8567285 - B2_Mm2 SINE B2 -4 191 3 2 2024 519 257 26 19 chr1 188628276 188628431 -8567001 - RMER30 DNA MER1_type -42 160 5 2 2024 280 379 0 21 chr1 188628674 188628817 -8566615 - ID_B1 SINE B4 0 224 85 2 2024 540 254 60 0 chr1 188631942 188632076 -8563356 + RSINE1 SINE B4 3 144 -21 2 2024 228 35 0 0 chr1 188632927 188632956 -8562476 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 2 2024 291 28 0 0 chr1 188634790 188634826 -8560606 + U2 snRNA snRNA 1 36 -152 2 2024 447 125 0 0 chr1 188635047 188635119 -8560313 + (TCC)n Simple_repeat Simple_repeat 2 73 0 2 2024 933 129 0 0 chr1 188635138 188635270 -8560162 - B1_Mus1 SINE Alu -16 132 1 2 2024 488 268 43 0 chr1 188635356 188635494 -8559938 - RSINE1 SINE B4 0 165 22 2 2024 5458 76 67 3 chr1 188635537 188636287 -8559145 - Lx3_Mus LINE L1 0 7009 6212 2 2024 870 175 0 7 chr1 188636606 188636750 -8558682 + B1_Mur2 SINE Alu 4 146 -3 2 2024 303 356 0 70 chr1 188637243 188637385 -8558047 - ID_B1 SINE B4 -4 220 89 2 2024 542 279 5 84 chr1 188637527 188637748 -8557684 - B3A SINE B2 0 198 9 2 2024 280 316 30 10 chr1 188638346 188638445 -8556987 + Charlie25 DNA MER1_type 928 1028 -1496 2 2024 238 237 17 0 chr1 188638553 188638612 -8556820 - MTEb LTR MaLR -1 378 319 2 2024 3328 55 5 5 chr1 188639171 188639592 -8555840 - BGLII LTR ERVK 0 421 1 2 2024 322 370 26 0 chr1 188640472 188640661 -8554771 + Charlie25 DNA MER1_type 1933 2126 -398 2 2024 304 257 14 0 chr1 188641917 188641987 -8553445 + ID4_ SINE ID 5 75 -8 2 2024 842 262 59 48 chr1 188642015 188642287 -8553145 + B4 SINE B4 4 278 -14 2 2024 820 229 120 50 chr1 188643845 188644103 -8551329 + B4 SINE B4 3 278 -14 2 2024 360 352 97 16 chr1 188644146 188644394 -8551038 + B4 SINE B4 4 271 -21 2 2024 234 174 0 0 chr1 188644425 188644471 -8550961 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 2024 23 54 0 0 chr1 188644628 188644665 -8550767 + AT_rich Low_complexity Low_complexity 1 37 0 2 2024 635 203 42 7 chr1 188644924 188645068 -8550364 + B3A SINE B2 2 150 -48 2 2024 1256 44 23 0 chr1 188645068 188645416 -8550016 + (CA)n Simple_repeat Simple_repeat 1 356 0 2 2024 4120 114 53 8 chr1 188645488 188646107 -8549325 - Lx LINE L1 -5 6649 6003 2 2024 932 228 33 0 chr1 188646305 188646489 -8548943 - B3A SINE B2 -8 190 1 2 2024 228 317 36 12 chr1 188646635 188646718 -8548714 + MLT1L LTR MaLR 157 241 -369 2 2024 769 225 58 21 chr1 188647294 188647485 -8547947 - B3A SINE B2 0 198 1 2 2024 509 274 8 0 chr1 188647522 188647639 -8547793 - ID_B1 SINE B4 -48 176 59 2 2024 190 354 84 8 chr1 188648355 188648486 -8546946 - L2a LINE L2 -59 3367 3227 2 2024 357 141 0 0 chr1 188649149 188649220 -8546212 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 2024 993 158 0 0 chr1 188649315 188649492 -8545940 + CT-rich Low_complexity Low_complexity 2 178 0 2 2024 886 113 13 7 chr1 188649492 188649643 -8545789 + (TTCC)n Simple_repeat Simple_repeat 4 155 0 2 2024 215 231 173 0 chr1 188649684 188649736 -8545696 - ID4_ SINE ID -12 71 11 2 2024 326 23 0 23 chr1 188650244 188650288 -8545144 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2 2024 279 0 0 0 chr1 188651338 188651369 -8544063 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2 2024 310 37 74 0 chr1 188651685 188651739 -8543693 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 2 2024 21 0 0 0 chr1 188651771 188651792 -8543640 + AT_rich Low_complexity Low_complexity 1 21 0 2 2024 23 54 0 0 chr1 188655552 188655589 -8539843 + AT_rich Low_complexity Low_complexity 1 37 0 2 2024 279 130 0 0 chr1 188656499 188656553 -8538879 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 2024 252 0 0 0 chr1 188656553 188656581 -8538851 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 2024 198 0 0 0 chr1 188656581 188656602 -8538830 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 2024 329 0 24 0 chr1 188658818 188658859 -8536573 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2 2024 23 0 0 0 chr1 188659016 188659039 -8536393 + AT_rich Low_complexity Low_complexity 1 23 0 2 2024 21 0 0 0 chr1 188661120 188661141 -8534291 + AT_rich Low_complexity Low_complexity 1 21 0 2 2024 775 291 153 9 chr1 188662790 188663137 -8532295 - Lx8 LINE L1 -141 7332 6936 2 2024 1371 280 64 45 chr1 188663188 188663674 -8531758 - Lx8 LINE L1 -6 7467 6973 2 2024 501 84 0 0 chr1 188663777 188663848 -8531584 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 2024 536 253 12 76 chr1 188664736 188664907 -8530525 - RSINE1 SINE B4 -4 161 2 2 2024 276 30 0 0 chr1 188664917 188664950 -8530482 + (TCCC)n Simple_repeat Simple_repeat 1 33 0 2 2024 1139 75 6 0 chr1 188664950 188665109 -8530323 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 2 2024 198 71 0 0 chr1 188665349 188665377 -8530055 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 2024 200 253 52 26 chr1 188667957 188668034 -8527398 - L3b LINE CR1 -83 399 321 2 2024 670 289 38 45 chr1 188668148 188668438 -8526994 - B4A SINE B4 -4 288 1 2 2024 517 252 24 0 chr1 188668731 188668854 -8526578 + B1F1 SINE Alu 3 128 -21 2 2024 4070 54 2 2 chr1 188669738 188670235 -8525197 + L1Md_F2 LINE L1 6084 6580 -2 2 2024 456 335 113 12 chr1 188670702 188670950 -8524482 - B4A SINE B4 -1 291 19 2 2024 254 283 52 151 chr1 188671823 188672114 -8523318 - ORR1E LTR MaLR -2 357 96 2 2024 225 0 0 0 chr1 188672363 188672388 -8523044 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 2024 378 0 0 0 chr1 188672388 188672429 -8523003 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 2024 464 333 95 14 chr1 188672429 188672712 -8522720 + RLTR19-int LTR ERVK 1701 2006 -4131 2 2024 342 0 0 0 chr1 188672726 188672764 -8522668 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 2024 808 268 5 5 chr1 188672764 188672948 -8522484 - B3 SINE B2 -32 184 1 2 2024 414 0 0 0 chr1 188673102 188673148 -8522284 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 2024 362 250 9 91 chr1 188673256 188673366 -8522066 - B1F SINE Alu -31 118 15 2 2024 288 0 0 0 chr1 188675050 188675082 -8520350 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 2024 649 301 6 0 chr1 188675195 188675358 -8520074 + RSINE1 SINE B4 2 165 0 2 2024 308 83 0 0 chr1 188675539 188675587 -8519845 + RMER4B LTR ERVK 1 48 -537 2 2024 1255 80 0 6 chr1 188675587 188675763 -8519669 + B2_Mm2 SINE B2 1 175 -20 2 2024 2464 142 83 76 chr1 188675756 188676296 -8519136 + RMER4B LTR ERVK 32 575 -10 2 2024 25 0 0 0 chr1 188677164 188677189 -8518243 + AT_rich Low_complexity Low_complexity 1 25 0 2 2024 2949 164 38 41 chr1 188677213 188677798 -8517634 - Lx LINE L1 -5 6649 6067 2 2024 3821 199 35 11 chr1 188678194 188679013 -8516419 + Lx9 LINE L1 6806 7644 0 2 2024 1609 37 11 0 chr1 188679140 188679330 -8516102 - B2_Mm2 SINE B2 -3 192 1 2 2024 246 228 66 47 chr1 188679476 188679582 -8515850 - RLTR8 LTR ERVK 0 365 258 2 2024 1565 53 11 0 chr1 188679934 188680124 -8515308 + B2_Mm2 SINE B2 1 192 -3 2 2024 199 87 65 0 chr1 188680514 188680560 -8514872 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 2024 438 304 32 23 chr1 188680984 188681203 -8514229 - Charlie7 DNA MER1_type -297 2315 2095 2 2024 366 329 30 53 chr1 188681208 188681471 -8513961 + L1MC LINE L1 5507 5763 -2119 2 2024 36 0 0 0 chr1 188681555 188681591 -8513841 + AT_rich Low_complexity Low_complexity 1 36 0 2 2024 531 270 105 0 chr1 188682731 188682883 -8512549 - B4 SINE B4 -4 288 121 2 2024 2237 243 81 36 chr1 188682953 188683667 -8511765 - Lx9 LINE L1 -1 7643 6898 2 2024 532 228 8 21 chr1 188684126 188684365 -8511067 + (TATATG)n Simple_repeat Simple_repeat 1 235 0 2 2024 347 240 0 13 chr1 188684366 188684442 -8510990 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 2024 376 188 87 139 chr1 188684445 188684618 -8510814 - RSINE1 SINE B4 0 165 2 2 2024 392 278 35 9 chr1 188685498 188685614 -8509818 - PB1D7 SINE Alu 0 120 2 2 2024 724 297 69 24 chr1 188685663 188685998 -8509434 + MLT1A0 LTR MaLR 16 365 0 2 2024 553 246 7 65 chr1 188686816 188686960 -8508472 + RSINE1 SINE B4 2 140 -25 2 2024 306 0 0 0 chr1 188686971 188687005 -8508427 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 2024 496 209 9 0 chr1 188687016 188687121 -8508311 + Lx9 LINE L1 7356 7461 -183 2 2024 801 56 0 0 chr1 188687121 188687228 -8508204 + MTB LTR MaLR 294 400 0 2 2024 605 180 5 33 chr1 188687272 188687456 -8507976 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 2024 482 220 14 5 chr1 188687476 188687701 -8507731 + (TG)n Simple_repeat Simple_repeat 1 227 0 2 2024 291 257 0 13 chr1 188687715 188687790 -8507642 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 2024 3953 273 53 35 chr1 188687870 188688144 -8507288 + Lx7 LINE L1 5885 6187 -1509 2 2024 396 40 0 0 chr1 188688144 188688194 -8507238 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 2024 3953 273 53 35 chr1 188688194 188689197 -8506235 + Lx7 LINE L1 6188 7184 -512 2 2024 285 68 0 0 chr1 188689197 188689241 -8506191 + B1_Mus2 SINE Alu 103 146 -1 2 2024 387 306 16 0 chr1 188689266 188689390 -8506042 + Lx7 LINE L1 7187 7312 -384 2 2024 479 45 15 0 chr1 188689482 188689548 -8505884 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 2024 262 292 183 41 chr1 188689650 188690043 -8505389 + L1MEf LINE L1 1522 1970 -4272 2 2024 287 306 166 19 chr1 188690459 188691042 -8504390 + L1MEf LINE L1 2510 3178 -2968 2 2024 502 275 207 50 chr1 188691135 188692204 -8503228 - L1M4b LINE L1 -4201 3133 1595 2 2024 378 231 88 7 chr1 188692183 188692331 -8503101 - L1MC3 LINE L1 -2 7783 7624 2 2024 314 338 129 22 chr1 188693109 188693381 -8502051 - L1M4b LINE L1 -6474 860 560 2 2024 4474 12 0 12 chr1 188693390 188693889 -8501543 - MT2_Mm LTR ERVL 0 493 1 3 2024 321 0 0 0 chr1 188693889 188693927 -8501505 - MERVL-int LTR ERVL 0 5485 5448 3 2024 354 167 46 35 chr1 188693927 188694014 -8501418 - ORR1A3-int LTR MaLR -1323 640 553 3 2024 48535 14 6 0 chr1 188694014 188699340 -8496092 - MERVL-int LTR ERVL -125 5360 1 3 2024 4474 12 0 12 chr1 188699340 188699839 -8495593 - MT2_Mm LTR ERVL 0 493 1 3 2024 863 258 25 0 chr1 188700375 188700573 -8494859 + B3 SINE B2 1 203 -13 3 2024 3661 26 28 9 chr1 188700909 188701337 -8494095 - RLTR10C LTR ERVK 0 436 1 3 2024 183 382 45 0 chr1 188701828 188701938 -8493494 - L3 LINE CR1 -788 3701 3587 3 2024 269 296 0 12 chr1 188701949 188702031 -8493401 + MIR SINE MIR 117 197 -65 3 2024 414 0 0 0 chr1 188702729 188702775 -8492657 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 2024 255 61 0 0 chr1 188702776 188702809 -8492623 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 2024 189 74 0 0 chr1 188702849 188702876 -8492556 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 2024 243 0 0 0 chr1 188702917 188702944 -8492488 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 2024 252 0 0 0 chr1 188702944 188702971 -8492461 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 2024 459 0 0 0 chr1 188703013 188703064 -8492368 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 2024 713 283 72 23 chr1 188703215 188703522 -8491910 + RMER5 LTR ERV1 40 361 -173 3 2024 386 284 99 7 chr1 188703546 188703688 -8491744 + RSINE1 SINE B4 3 157 -8 3 2024 192 97 0 0 chr1 188703749 188703780 -8491652 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 3 2024 263 353 99 16 chr1 188703780 188703901 -8491531 + RMER5 LTR ERV1 393 523 -11 3 2024 450 238 109 85 chr1 188703939 188704150 -8491282 + RLTR11B LTR ERVK 16 231 -222 3 2024 1563 203 62 34 chr1 188706937 188707294 -8488138 - Lx9 LINE L1 -63 7581 7215 3 2024 443 272 6 0 chr1 188708067 188708236 -8487196 + (CA)n Simple_repeat Simple_repeat 1 170 0 3 2024 317 360 65 9 chr1 188708856 188709072 -8486360 + MLT1C LTR MaLR 199 426 -41 3 2024 728 290 42 57 chr1 188709110 188709464 -8485968 + ORR1E LTR MaLR 6 354 -5 3 2024 232 264 69 0 chr1 188709842 188709914 -8485518 + MTE2b LTR MaLR 265 341 -38 3 2024 464 240 31 0 chr1 188709912 188710041 -8485391 + MTE-int LTR MaLR 18 150 -1430 3 2024 556 178 30 106 chr1 188710043 188710175 -8485257 + Lx8 LINE L1 7019 7140 -333 3 2024 2723 76 60 55 chr1 188710215 188710633 -8484799 + BGLII_Mus LTR ERVK 1 420 -2 3 2024 324 0 0 0 chr1 188710645 188710681 -8484751 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 2024 265 306 9 9 chr1 188710683 188710792 -8484640 + Lx8 LINE L1 7363 7471 -2 3 2024 248 70 23 0 chr1 188711750 188711793 -8483639 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 2024 462 79 0 0 chr1 188711878 188711941 -8483491 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 2024 339 25 0 0 chr1 188712047 188712087 -8483345 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 2024 408 82 0 0 chr1 188712087 188712147 -8483285 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 2024 356 169 104 0 chr1 188712157 188712234 -8483198 - RSINE1 SINE B4 -75 90 6 3 2024 389 260 8 8 chr1 188714623 188714747 -8480685 + GA-rich Low_complexity Low_complexity 3 126 0 3 2024 406 271 31 39 chr1 188716511 188716638 -8478794 + B4 SINE B4 167 292 0 3 2024 571 265 70 33 chr1 188716833 188717075 -8478357 - MER5C DNA MER1_type 0 313 63 3 2024 297 264 179 0 chr1 188717260 188717366 -8478066 + B3A SINE B2 39 163 -35 3 2024 1178 305 147 22 chr1 188717465 188718245 -8477187 - MER45B DNA Tip100 -34 1006 129 3 2024 285 315 47 52 chr1 188718409 188718600 -8476832 - Tigger7 DNA MER2_type -178 2313 2124 3 2024 22 0 0 0 chr1 188719021 188719043 -8476389 + AT_rich Low_complexity Low_complexity 1 22 0 3 2024 392 257 0 28 chr1 188719199 188719307 -8476125 + B1F1 SINE Alu 45 149 0 3 2024 528 260 28 61 chr1 188719882 188720062 -8475370 - MTEa LTR MaLR -3 376 203 3 2024 262 306 139 0 chr1 188720357 188720465 -8474967 - MTEa LTR MaLR -236 123 1 3 2024 553 284 180 4 chr1 188720596 188720840 -8474592 + Lx8 LINE L1 7182 7468 -5 3 2024 309 241 25 0 chr1 188720769 188720848 -8474584 + RMER1C Other Other 1243 1323 -19 3 2024 333 223 0 0 chr1 188722717 188722847 -8472585 + GA-rich Low_complexity Low_complexity 1 130 0 3 2024 273 333 142 48 chr1 188724088 188724564 -8470868 - Kanga2_a DNA Tc2 -199 689 166 3 2024 1070 130 6 0 chr1 188724564 188724741 -8470691 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 2024 273 333 142 48 chr1 188724741 188724800 -8470632 - Kanga2_a DNA Tc2 -723 165 104 3 2024 273 57 0 0 chr1 188725285 188725320 -8470112 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2024 234 252 65 101 chr1 188726093 188726169 -8469263 + ORR1A3-int LTR MaLR 544 613 -1350 3 2024 2450 79 28 27 chr1 188726169 188726561 -8468871 + MT2_Mm LTR ERVL 1 439 -162 3 2024 369 0 0 0 chr1 188726663 188726704 -8468728 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 3 2024 201 213 0 0 chr1 188727044 188727091 -8468341 + (CATA)n Simple_repeat Simple_repeat 4 50 0 3 2024 298 359 74 20 chr1 188727096 188727244 -8468188 + L2b LINE L2 3258 3426 0 3 2024 1208 126 6 17 chr1 188727882 188728060 -8467372 + B2_Mm2 SINE B2 2 177 -18 3 2024 357 50 0 48 chr1 188728105 188728168 -8467264 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 2024 568 314 125 71 chr1 188728168 188728785 -8466647 + L1MB5 LINE L1 4465 5114 -1032 3 2024 215 182 0 52 chr1 188728785 188728843 -8466589 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 3 2024 398 292 0 15 chr1 188728900 188729032 -8466400 + (CA)n Simple_repeat Simple_repeat 1 130 0 3 2024 804 251 35 19 chr1 188729090 188729377 -8466055 + L1MB5 LINE L1 5181 5475 -705 3 2024 375 265 105 8 chr1 188729396 188729507 -8465925 + B1F SINE Alu 4 117 -32 3 2024 549 0 0 0 chr1 188729507 188729568 -8465864 + (TATAG)n Simple_repeat Simple_repeat 1 61 0 3 2024 375 265 105 8 chr1 188729568 188729589 -8465843 + B1F SINE Alu 118 147 -2 3 2024 570 117 0 0 chr1 188729631 188729742 -8465690 + (TC)n Simple_repeat Simple_repeat 2 112 0 3 2024 396 0 0 0 chr1 188729742 188729786 -8465646 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 2024 525 283 74 77 chr1 188729861 188730358 -8465074 + L1MB5 LINE L1 5678 6173 -1 3 2024 617 211 41 0 chr1 188730676 188730799 -8464633 + RSINE1 SINE B4 4 131 -34 3 2024 275 278 23 23 chr1 188731384 188731513 -8463919 + GA-rich Low_complexity Low_complexity 5 133 0 3 2024 250 179 45 19 chr1 188734257 188734317 -8461115 - ID4_ SINE ID -5 78 14 3 2024 848 71 53 6 chr1 188734860 188735029 -8460403 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 3 2024 666 253 116 0 chr1 188735129 188735275 -8460157 - RSINE1 SINE B4 0 165 3 3 2024 694 253 41 26 chr1 188735622 188735817 -8459615 + B3A SINE B2 1 198 0 3 2024 330 269 144 27 chr1 188736249 188736360 -8459072 - RSINE1 SINE B4 -39 126 3 3 2024 797 279 146 25 chr1 188736553 188736917 -8458515 + MTD LTR MaLR 1 408 -11 3 2024 253 316 25 41 chr1 188738880 188739002 -8456430 - MLT1A0 LTR MaLR -10 355 236 3 2024 321 208 39 13 chr1 188739032 188739110 -8456322 - MLT1A0 LTR MaLR -195 170 91 3 2024 232 354 10 20 chr1 188739588 188739686 -8455746 - ORR1E LTR MaLR -230 129 33 3 2024 461 298 95 0 chr1 188740129 188740297 -8455135 - B4 SINE B4 -64 228 45 3 2024 441 0 0 0 chr1 188740317 188740366 -8455066 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 2024 324 269 59 25 chr1 188741846 188741964 -8453468 - L1MB8 LINE L1 -20 6158 6037 3 2024 390 21 0 0 chr1 188742082 188742129 -8453303 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 2024 547 284 93 30 chr1 188742129 188742365 -8453067 - L1MB8 LINE L1 -375 5803 5553 3 2024 409 235 112 48 chr1 188742498 188742623 -8452809 + B1F1 SINE Alu 1 133 -16 3 2024 765 216 87 8 chr1 188742658 188742869 -8452563 + MTD LTR MaLR 169 405 -14 3 2024 1588 279 62 67 chr1 188743086 188743192 -8452240 - L1MB8 LINE L1 -1421 4725 4619 3 2024 258 32 0 0 chr1 188743192 188743223 -8452209 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 31 1588 279 62 67 chr1 188743223 188743991 -8451441 - L1MB8 LINE L1 -1528 4618 3863 3 2025 204 97 0 0 chr1 188743991 188744022 -8451410 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 2025 468 0 0 0 chr1 188744031 188744083 -8451349 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 3 2025 1588 279 62 67 chr1 188744083 188744159 -8451273 - L1MB8 LINE L1 -2294 3852 3769 3 2025 243 0 0 0 chr1 188744450 188744477 -8450955 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 2025 729 262 28 28 chr1 188744927 188745143 -8450289 - ID_B1 SINE B4 -7 217 2 3 2025 252 0 0 0 chr1 188746097 188746125 -8449307 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 2025 258 32 0 0 chr1 188746338 188746369 -8449063 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 2025 1203 107 0 0 chr1 188747637 188747815 -8447617 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 2025 312 137 0 0 chr1 188748645 188748696 -8446736 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 3 2025 324 0 0 0 chr1 188749607 188749643 -8445789 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 2025 189 0 0 0 chr1 188749894 188749915 -8445517 + (A)n Simple_repeat Simple_repeat 1 21 0 3 2025 333 0 0 0 chr1 188750358 188750395 -8445037 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 2025 513 298 20 41 chr1 188751563 188751710 -8443722 + ID_B1 SINE B4 81 224 0 3 2025 410 284 49 0 chr1 188751927 188752029 -8443403 - B1F SINE Alu 0 149 43 3 2025 21 0 0 0 chr1 188752032 188752053 -8443379 + AT_rich Low_complexity Low_complexity 1 21 0 3 2025 33 66 0 0 chr1 188752088 188752149 -8443283 + AT_rich Low_complexity Low_complexity 1 61 0 3 2025 315 214 0 0 chr1 188752195 188752265 -8443167 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 2025 802 278 68 21 chr1 188752630 188752909 -8442523 - Lx8 LINE L1 -5 7468 7177 3 2025 656 295 26 26 chr1 188753761 188753956 -8441476 + B3A SINE B2 2 196 -2 3 2025 25 0 0 0 chr1 188753958 188753983 -8441449 + AT_rich Low_complexity Low_complexity 1 25 0 3 2025 352 316 51 14 chr1 188754149 188754287 -8441145 - ID_B1 SINE B4 0 224 82 3 2025 23 0 0 0 chr1 188756169 188756192 -8439240 + AT_rich Low_complexity Low_complexity 1 23 0 3 2025 525 264 24 16 chr1 188756230 188756357 -8439075 - B3 SINE B2 -88 128 1 3 2025 1112 235 92 103 chr1 188756805 188757047 -8438385 - RMER4A LTR ERVK 0 466 253 3 2025 219 139 0 0 chr1 188757047 188757083 -8438349 + (CAG)n Simple_repeat Simple_repeat 2 37 0 3 2025 1112 235 92 103 chr1 188757083 188757198 -8438234 - RMER4A LTR ERVK -214 252 108 3 2025 2640 203 23 94 chr1 188757198 188757856 -8437576 + RMER19C LTR ERVK 1 611 0 4 2025 1112 235 92 103 chr1 188757856 188757952 -8437480 - RMER4A LTR ERVK -359 107 17 3 2025 854 298 16 10 chr1 188758089 188758282 -8437150 - ID_B1 SINE B4 -28 196 3 4 2025 907 233 45 0 chr1 188759921 188760123 -8435309 - B3 SINE B2 0 216 6 4 2025 2922 179 54 15 chr1 188760154 188760692 -8434740 - Lx2B LINE L1 -4 6996 6438 4 2025 452 324 137 57 chr1 188761131 188761609 -8433823 + L2a LINE L2 2913 3426 0 4 2025 1263 265 91 11 chr1 188762451 188762802 -8432630 - MTE2a LTR MaLR 0 379 1 4 2025 240 35 0 0 chr1 188763988 188764017 -8431415 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 4 2025 836 283 63 16 chr1 188764699 188764954 -8430478 + B4 SINE B4 5 271 -21 4 2025 220 188 15 15 chr1 188764956 188765021 -8430411 + CT-rich Low_complexity Low_complexity 4 68 0 4 2025 243 0 0 0 chr1 188765024 188765051 -8430381 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 2025 253 337 12 0 chr1 188766130 188766216 -8429216 - L2c LINE L2 -38 3349 3263 4 2025 407 361 13 0 chr1 188766486 188766641 -8428791 - ID_B1 SINE B4 -67 157 1 4 2025 2378 209 95 21 chr1 188767101 188767618 -8427814 - Lx6 LINE L1 -1 7459 6905 4 2025 273 245 73 21 chr1 188768446 188768542 -8426890 - MLT1A1 LTR MaLR -17 391 291 4 2025 180 0 0 0 chr1 188768676 188768696 -8426736 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 2025 197 208 41 20 chr1 188768762 188768811 -8426621 - L2 LINE L2 -3152 267 218 4 2025 2093 121 38 63 chr1 188769941 188770337 -8425095 + ORR1B1 LTR MaLR 1 386 -8 4 2025 820 232 75 10 chr1 188770415 188770615 -8424817 + B3 SINE B2 1 213 -3 4 2025 6680 106 52 12 chr1 188770783 188771728 -8423704 + RLTR13C1 LTR ERVK 1 983 0 4 2025 1139 227 115 26 chr1 188772013 188772352 -8423080 + ORR1D2 LTR MaLR 1 369 -1 4 2025 383 241 17 25 chr1 188772527 188772646 -8422786 + ORR1E LTR MaLR 4 121 -238 4 2025 232 289 0 0 chr1 188772988 188773040 -8422392 + polypyrimidine Low_complexity Low_complexity 1 52 0 4 2025 198 260 0 0 chr1 188774030 188774103 -8421329 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 2025 591 250 201 73 chr1 188774109 188774368 -8421064 - B4 SINE B4 0 292 1 4 2025 213 254 51 0 chr1 188774567 188774626 -8420806 + MIRc SINE MIR 81 142 -126 4 2025 272 254 82 27 chr1 188775369 188775442 -8419990 + ID4 SINE ID 4 80 -3 4 2025 458 46 0 15 chr1 188777424 188777490 -8417942 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 2025 360 0 0 0 chr1 188778422 188778462 -8416970 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 2025 546 300 22 56 chr1 188778565 188778745 -8416687 - B4A SINE B4 -118 174 1 4 2025 974 122 0 33 chr1 188779068 188779220 -8416212 + B1_Mus2 SINE Alu 1 147 0 4 2025 24 0 0 0 chr1 188781402 188781426 -8414006 + AT_rich Low_complexity Low_complexity 1 24 0 4 2025 519 60 0 0 chr1 188781981 188782048 -8413384 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 4 2025 326 206 68 0 chr1 188782464 188782537 -8412895 + RSINE1 SINE B4 27 104 -61 4 2025 360 0 0 0 chr1 188782568 188782608 -8412824 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 2025 269 310 162 31 chr1 188782628 188782788 -8412644 - Tigger1 DNA MER2_type -162 2256 2076 4 2025 1618 227 86 142 chr1 188783710 188784316 -8411116 - RMER19C LTR ERVK 0 611 40 4 2025 385 86 0 17 chr1 188785599 188785658 -8409774 - RMER19C LTR ERVK -552 59 2 4 2025 192 262 33 87 chr1 188785766 188785858 -8409574 + L2a LINE L2 3322 3408 -18 4 2025 222 174 0 0 chr1 188786063 188786109 -8409323 + (CAA)n Simple_repeat Simple_repeat 1 46 0 4 2025 211 227 46 23 chr1 188786304 188786435 -8408997 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 4 2025 312 200 0 0 chr1 188786437 188786502 -8408930 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 4 2025 315 0 0 0 chr1 188786536 188786571 -8408861 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 2025 378 0 0 0 chr1 188786571 188786612 -8408820 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 2025 599 236 101 35 chr1 188786855 188787053 -8408379 - B3 SINE B2 -4 212 2 4 2025 307 109 77 15 chr1 188787101 188787166 -8408266 - L1MCa LINE L1 -4821 1687 1619 4 2025 238 317 0 25 chr1 188787199 188787287 -8408145 + ID4_ SINE ID 4 85 -67 4 2025 329 276 104 115 chr1 188787296 188787488 -8407944 - L1MCa LINE L1 -4938 1570 1381 4 2025 315 0 0 0 chr1 188787877 188787912 -8407520 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 2025 771 186 141 74 chr1 188789129 188789358 -8406074 - RMER21B LTR ERV1 -277 565 314 4 2025 458 61 0 15 chr1 188789358 188789425 -8406007 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 2025 771 245 151 55 chr1 188789425 188789504 -8405928 - RMER21B LTR ERV1 -517 430 293 4 2025 1031 59 89 0 chr1 188789623 188789758 -8405674 + B1_Mm SINE Alu 1 147 0 4 2025 743 221 21 32 chr1 188790188 188790375 -8405057 - B3A SINE B2 -9 189 5 4 2025 204 40 0 0 chr1 188791646 188791671 -8403761 + (CGGA)n Simple_repeat Simple_repeat 2 26 0 4 2025 215 349 0 0 chr1 188793560 188793643 -8401789 + (CAG)n Simple_repeat Simple_repeat 2 84 0 4 2025 1310 297 89 14 chr1 188794203 188794792 -8400640 + FordPrefect DNA Tip100 939 1593 -90 4 2025 288 263 0 38 chr1 188794794 188794873 -8400559 - ID_B1 SINE B4 -1 223 148 4 2025 229 247 165 41 chr1 188794876 188794973 -8400459 + FordPrefect DNA Tip100 1564 1672 -11 4 2025 409 317 0 72 chr1 188796177 188796357 -8399075 + FordPrefect DNA Tip100 1424 1590 -93 4 2025 966 248 105 77 chr1 188796375 188796842 -8398590 - L1MC3 LINE L1 -94 7691 7212 4 2025 243 0 0 0 chr1 188796852 188796879 -8398553 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 2025 212 293 244 0 chr1 188796879 188796961 -8398471 - PB1D10 SINE Alu -12 105 4 4 2025 337 236 14 14 chr1 188796965 188797038 -8398394 - L1MC3 LINE L1 -593 7192 7120 4 2025 256 220 17 17 chr1 188797474 188797534 -8397898 - L1MC3 LINE L1 -855 6930 6871 4 2025 260 287 23 11 chr1 188797600 188797688 -8397744 - MTEa LTR MaLR 0 379 291 4 2025 559 268 66 178 chr1 188797837 188798264 -8397168 - MTE2a LTR MaLR 0 379 1 4 2025 189 94 0 0 chr1 188798495 188798527 -8396905 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 2025 447 19 0 0 chr1 188798631 188798683 -8396749 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 2025 619 176 68 103 chr1 188800155 188800301 -8395131 + B1_Mur4 SINE Alu 10 150 0 4 2025 24 0 0 0 chr1 188800426 188800450 -8394982 + AT_rich Low_complexity Low_complexity 1 24 0 4 2025 403 243 217 21 chr1 188800646 188800789 -8394643 + LFSINE_Vert SINE SINE 151 321 -138 4 2025 465 19 0 0 chr1 188801603 188801657 -8393775 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 2025 186 286 61 45 chr1 188801913 188801979 -8393453 + L3 LINE CR1 3501 3567 -922 4 2025 258 323 133 41 chr1 188802276 188802547 -8392885 - L1ME1 LINE L1 -54 6125 5830 4 2025 237 159 0 0 chr1 188802687 188802731 -8392701 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 2025 584 324 34 0 chr1 188802760 188802936 -8392496 - B3A SINE B2 -15 183 2 4 2025 725 156 0 32 chr1 188803810 188803996 -8391436 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 2025 213 121 0 0 chr1 188804866 188804899 -8390533 + (TATG)n Simple_repeat Simple_repeat 4 36 0 4 2025 568 296 128 16 chr1 188804903 188805154 -8390278 - B4A SINE B4 -11 281 3 4 2025 699 99 0 0 chr1 188806075 188806176 -8389256 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 4 2025 448 294 16 8 chr1 188806177 188806304 -8389128 - B3 SINE B2 -7 209 82 4 2025 277 352 106 40 chr1 188806459 188806610 -8388822 - RSINE1 SINE B4 0 165 5 4 2025 465 94 11 23 chr1 188806786 188806873 -8388559 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 4 2025 881 138 35 0 chr1 188806873 188807018 -8388414 - B1_Mur4 SINE Alu 0 150 1 4 2025 390 219 85 9 chr1 188807372 188807478 -8387954 - L1MA8 LINE L1 -134 6157 6044 4 2025 809 133 23 8 chr1 188807491 188807620 -8387812 - B1_Mur4 SINE Alu -2 148 18 4 2025 405 277 43 92 chr1 188807620 188807654 -8387778 - B4 SINE B4 -69 223 69 4 2025 291 283 67 0 chr1 188808182 188808302 -8387130 - MLT1C LTR MaLR -52 415 288 4 2025 308 191 97 43 chr1 188808306 188808399 -8387033 - B4A SINE B4 -41 251 154 4 2025 448 304 53 32 chr1 188809038 188809225 -8386207 + B3 SINE B2 26 216 0 4 2025 453 265 32 57 chr1 188809241 188809365 -8386067 + RSINE1 SINE B4 3 123 -42 4 2025 342 67 0 0 chr1 188809365 188809410 -8386022 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 2025 195 69 0 0 chr1 188809446 188809475 -8385957 + (A)n Simple_repeat Simple_repeat 1 29 0 4 2025 29 0 0 0 chr1 188811190 188811219 -8384213 + AT_rich Low_complexity Low_complexity 1 29 0 4 2025 181 216 0 73 chr1 188811988 188812043 -8383389 + L3 LINE CR1 924 974 -3515 4 2025 234 91 0 0 chr1 188812725 188812758 -8382674 + (T)n Simple_repeat Simple_repeat 1 33 0 4 2025 325 259 138 58 chr1 188813232 188813389 -8382043 + MIRb SINE MIR 15 183 -93 4 2025 706 275 16 11 chr1 188814165 188814356 -8381076 - B3A SINE B2 -6 192 1 4 2025 275 293 39 39 chr1 188814918 188815021 -8380411 - ID_B1 SINE B4 -1 223 121 4 2025 416 78 31 0 chr1 188815063 188815127 -8380305 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 4 2025 1223 61 0 0 chr1 188815127 188815275 -8380157 - B1_Mus1 SINE Alu 0 148 1 4 2025 254 255 0 0 chr1 188815428 188815479 -8379953 + LFSINE_Vert SINE SINE 85 135 -324 4 2025 189 254 28 56 chr1 188815757 188815828 -8379604 + L3 LINE CR1 2481 2549 -1940 4 2025 276 260 63 84 chr1 188816697 188816840 -8378592 - RMER12 LTR ERVK 0 1322 1183 4 2025 6267 66 9 1 chr1 188817119 188817936 -8377496 - RLTR22_Mus LTR ERVK -985 823 1 4 2025 207 0 0 0 chr1 188818150 188818173 -8377259 + (A)n Simple_repeat Simple_repeat 1 23 0 5 2025 199 277 242 11 chr1 188818351 188818446 -8376986 - MIRb SINE MIR -6 262 146 5 2025 1125 101 0 0 chr1 188818525 188818704 -8376728 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 2025 311 85 60 24 chr1 188818952 188819036 -8376396 + CT-rich Low_complexity Low_complexity 3 89 0 5 2025 300 70 0 0 chr1 188819036 188819079 -8376353 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 2025 890 242 30 47 chr1 188819330 188819597 -8375835 - ORR1E LTR MaLR -125 242 1 5 2025 543 281 62 89 chr1 188820296 188820658 -8374774 + MTE2a LTR MaLR 88 419 0 5 2025 953 159 143 5 chr1 188821006 188821195 -8374237 - URR1A DNA MER1_type -11 215 1 5 2025 319 286 110 91 chr1 188821224 188821443 -8373989 - MLT1B LTR MaLR -127 263 41 5 2025 198 0 0 0 chr1 188822190 188822212 -8373220 + (T)n Simple_repeat Simple_repeat 1 22 0 5 2025 1103 254 20 44 chr1 188822364 188822661 -8372771 + B4 SINE B4 1 290 -2 5 2025 225 333 0 0 chr1 188822664 188822745 -8372687 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 2025 417 39 0 0 chr1 188822901 188822952 -8372480 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 5 2025 1196 68 0 0 chr1 188822952 188823100 -8372332 - B1_Mus1 SINE Alu 0 148 1 5 2025 1235 260 109 14 chr1 188823109 188823475 -8371957 - MTD LTR MaLR -14 405 5 5 2025 1215 131 16 5 chr1 188824739 188824931 -8370501 - MTC LTR MaLR 0 421 228 5 2025 1186 171 136 81 chr1 188824920 188825252 -8370180 - MTD-int LTR MaLR -904 354 5 5 2025 300 216 13 3 chr1 188825255 188825336 -8370096 - MTD LTR MaLR 0 421 338 5 2025 595 201 56 28 chr1 188825601 188825744 -8369688 + B1_Mur1 SINE Alu 1 147 -2 5 2025 474 169 0 0 chr1 188825981 188826070 -8369362 + CT-rich Low_complexity Low_complexity 4 92 0 5 2025 667 152 63 35 chr1 188826075 188826218 -8369214 - B1_Mus2 SINE Alu 0 147 1 5 2025 2423 151 52 8 chr1 188826218 188826618 -8368814 - MTC LTR MaLR -3 418 1 5 2025 660 182 0 0 chr1 188826763 188826895 -8368537 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 2025 869 283 102 8 chr1 188826915 188827161 -8368271 - B4 SINE B4 -17 275 7 5 2025 1042 261 79 4 chr1 188828512 188828777 -8366655 + B4A SINE B4 1 285 -7 5 2025 253 388 57 20 chr1 188828824 188828979 -8366453 - L2a LINE L2 -169 3257 3100 5 2025 3185 56 2 10 chr1 188828979 188829378 -8366054 - MTA_Mm LTR MaLR 0 396 1 5 2025 485 332 76 23 chr1 188829378 188829740 -8365692 - L2a LINE L2 -327 3099 2719 5 2025 194 108 0 51 chr1 188829744 188829783 -8365649 + C-rich Low_complexity Low_complexity 6 42 0 5 2025 368 281 35 21 chr1 188830611 188830753 -8364679 - B1F SINE Alu -1 148 5 5 2025 419 359 119 19 chr1 188830782 188831151 -8364281 - MLT1C LTR MaLR -1 466 61 5 2025 321 68 0 0 chr1 188831215 188831259 -8364173 + (TCCA)n Simple_repeat Simple_repeat 4 47 0 5 2025 229 260 82 20 chr1 188831808 188831906 -8363526 + MIRb SINE MIR 125 228 -40 5 2025 217 242 45 15 chr1 188832313 188832380 -8363052 + ID4_ SINE ID 15 83 0 5 2025 322 307 57 94 chr1 188832479 188832777 -8362655 + B4A SINE B4 3 289 -3 5 2025 570 262 7 46 chr1 188832843 188832995 -8362437 + B1_Mur1 SINE Alu 2 147 -2 5 2025 240 100 0 0 chr1 188836863 188836903 -8358529 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 2025 574 242 60 8 chr1 188836923 188837056 -8358376 - RSINE1 SINE B4 -14 151 12 5 2025 291 326 62 0 chr1 188837628 188837757 -8357675 + MER82 DNA MER2_type 206 342 -311 5 2025 398 290 83 13 chr1 188837867 188838024 -8357408 + MER82 DNA MER2_type 485 652 -1 5 2025 428 261 18 0 chr1 188838102 188838213 -8357219 + PB1D7 SINE Alu 2 114 -6 5 2025 297 0 0 0 chr1 188839095 188839128 -8356304 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 2025 960 169 24 121 chr1 188839290 188839539 -8355893 - RMER1C Other Other -11 1331 1107 5 2025 1157 249 87 14 chr1 188839550 188839916 -8355516 + MTD LTR MaLR 6 398 -21 5 2025 1085 270 96 3 chr1 188839988 188840333 -8355099 - MTEb LTR MaLR 0 379 3 5 2025 363 157 195 16 chr1 188841230 188841244 -8354188 + B1F SINE Alu 4 148 -1 5 2025 455 167 128 9 chr1 188841244 188841353 -8354079 + ID_B1 SINE B4 103 224 0 5 2025 351 0 0 0 chr1 188841439 188841478 -8353954 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 2025 328 248 197 47 chr1 188841502 188841735 -8353697 - B4A SINE B4 -20 272 5 5 2025 230 309 52 89 chr1 188842350 188842485 -8352947 + RMER15 LTR ERVL 432 561 -14 5 2025 247 265 29 0 chr1 188842529 188842597 -8352835 + ID4_ SINE ID 14 83 0 5 2025 279 71 0 0 chr1 188842662 188842704 -8352728 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 2025 487 308 84 42 chr1 188845598 188845957 -8349475 - L1M5 LINE L1 -516 5663 5290 5 2025 5169 122 60 6 chr1 188846366 188847210 -8348222 + L1_Mur2 LINE L1 4086 4975 -902 5 2025 325 0 22 22 chr1 188847242 188847288 -8348144 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 2025 315 0 0 0 chr1 188848629 188848664 -8346768 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 2025 270 0 0 0 chr1 188848664 188848694 -8346738 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 2025 1293 170 9 0 chr1 188850522 188850746 -8344686 - URR1A DNA MER1_type 0 226 1 5 2025 331 254 11 21 chr1 188851718 188851806 -8343626 - ID_B1 SINE B4 -127 165 81 5 2025 247 315 11 63 chr1 188852116 188852211 -8343221 + LTR48B LTR ERV1 4 93 -551 5 2025 240 240 0 0 chr1 188852335 188852385 -8343047 + ID4_ SINE ID 8 57 -26 5 2025 205 118 39 0 chr1 188852437 188852488 -8342944 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 2025 200 345 69 0 chr1 188853181 188853297 -8342135 - L3b LINE CR1 -136 346 223 5 2025 1538 222 27 109 chr1 188853870 188854405 -8341027 + Lx9 LINE L1 6695 7154 -490 5 2025 344 283 53 9 chr1 188854457 188854571 -8340861 + MER77 LTR ERVL 481 599 -8 5 2025 1009 270 100 26 chr1 188855268 188855618 -8339814 - MTEa LTR MaLR -3 376 1 5 2025 270 338 60 64 chr1 188855778 188856012 -8339420 + LTR41 LTR ERVL 83 315 -453 5 2025 697 255 153 46 chr1 188856365 188856824 -8338608 - LTR48B LTR ERV1 -12 775 82 5 2025 219 319 52 52 chr1 188857333 188857350 -8338082 - B4 SINE B4 -103 189 94 5 2025 341 316 0 0 chr1 188857350 188857429 -8338003 - PB1D10 SINE Alu -30 87 9 5 2025 320 268 173 0 chr1 188857746 188857873 -8337559 - B3 SINE B2 -67 149 1 5 2025 270 125 0 0 chr1 188858836 188858884 -8336548 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 2025 256 186 68 0 chr1 188861103 188861162 -8334270 - MTE2b LTR MaLR -3 376 314 5 2025 219 200 44 0 chr1 188861162 188861207 -8334225 + GA-rich Low_complexity Low_complexity 4 50 0 5 2025 606 330 98 11 chr1 188861207 188861492 -8333940 - MTE2b LTR MaLR -54 325 16 5 2025 935 157 208 0 chr1 188861517 188861695 -8333737 + B3 SINE B2 1 215 -1 5 2025 324 0 0 0 chr1 188862256 188862292 -8333140 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 2025 473 0 18 0 chr1 188862403 188862460 -8332972 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 2025 21 0 0 0 chr1 188862919 188862940 -8332492 + AT_rich Low_complexity Low_complexity 1 21 0 5 2025 390 263 92 83 chr1 188863055 188863308 -8332124 - B4 SINE B4 -7 285 54 5 2025 325 303 30 8 chr1 188863352 188863485 -8331947 - B1F1 SINE Alu -11 138 3 5 2025 428 291 63 41 chr1 188864008 188864308 -8331124 + ORR1E LTR MaLR 1 301 -83 5 2025 1871 192 82 18 chr1 188864935 188865521 -8329911 + BGLII_B LTR ERVK 18 553 0 5 2025 198 0 0 0 chr1 188866565 188866587 -8328845 + (T)n Simple_repeat Simple_repeat 1 22 0 5 2025 280 154 258 21 chr1 188866779 188866872 -8328560 + Lx2B LINE L1 6880 6994 -6 5 2025 359 350 144 5 chr1 188866958 188867145 -8328287 - B4A SINE B4 -8 284 72 5 2025 1598 217 190 40 chr1 188867466 188867966 -8327466 + RMER15 LTR ERVL 1 575 0 5 2025 243 245 0 0 chr1 188868554 188868607 -8326825 + GA-rich Low_complexity Low_complexity 1 53 0 5 2025 283 280 20 0 chr1 188870222 188870322 -8325110 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 2025 551 252 276 121 chr1 188870470 188870966 -8324466 + RMER15 LTR ERVL 1 573 -2 5 2025 207 100 0 0 chr1 188871027 188871057 -8324375 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 2025 225 0 0 0 chr1 188871465 188871490 -8323942 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 2025 348 24 0 0 chr1 188871493 188871534 -8323898 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 2025 240 149 0 0 chr1 188871644 188871691 -8323741 + (T)n Simple_repeat Simple_repeat 1 47 0 5 2025 1095 82 0 14 chr1 188871692 188871840 -8323592 - B1_Mus1 SINE Alu -1 147 2 5 2025 180 0 0 0 chr1 188872500 188872520 -8322912 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 2025 209 163 20 20 chr1 188872569 188872619 -8322813 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 5 2025 427 264 36 0 chr1 188872620 188872730 -8322702 - B1F2 SINE Alu -2 147 34 5 2025 320 280 101 8 chr1 188873264 188873383 -8322049 + Zaphod DNA Tip100 108 237 -3794 5 253 2144 273 108 21 chr1 188874016 188874953 -8320479 + L1MCa LINE L1 2074 3091 -3230 5 2026 225 216 40 13 chr1 188875161 188875236 -8320196 + B4A SINE B4 3 79 -213 5 2026 238 344 22 0 chr1 188875491 188875581 -8319851 + (CATA)n Simple_repeat Simple_repeat 4 95 0 5 2026 396 111 0 0 chr1 188876986 188877058 -8318374 + (A)n Simple_repeat Simple_repeat 1 72 0 5 2026 235 324 0 29 chr1 188878239 188878309 -8317123 + PB1D10 SINE Alu 18 85 -32 5 2026 243 340 0 11 chr1 188881167 188881262 -8314170 - L2a LINE L2 -54 3372 3279 6 2026 287 182 13 0 chr1 188881933 188882010 -8313422 + (TATG)n Simple_repeat Simple_repeat 1 78 0 6 2026 462 270 23 97 chr1 188882039 188882215 -8313217 - B4A SINE B4 -23 269 107 6 2026 414 204 0 0 chr1 188882243 188882346 -8313086 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 6 2026 277 309 133 11 chr1 188884330 188884510 -8310922 + MER44A DNA MER2_type 4 205 -134 6 2026 522 207 116 0 chr1 188884509 188884682 -8310750 - B3A SINE B2 -10 206 14 6 2026 406 273 114 21 chr1 188884838 188885144 -8310288 + LTR48 LTR ERV1 214 740 -47 6 2026 36311 35 0 0 chr1 188886530 188892192 -8303240 + L1Md_T LINE L1 1 5589 -297 6 2026 9577 6 0 0 chr1 188892192 188893188 -8302244 + L1Md_T LINE L1 5590 6585 0 6 2026 1117 279 83 49 chr1 188894078 188894549 -8300883 + RLTR12B LTR ERVK 11 497 -31 6 2026 276 186 0 0 chr1 188894840 188894899 -8300533 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 2026 450 270 36 0 chr1 188895655 188895766 -8299666 + PB1D10 SINE Alu 3 117 0 6 2026 334 306 40 46 chr1 188896372 188896523 -8298909 + RSINE1 SINE B4 2 151 -14 6 2026 21 0 0 0 chr1 188896558 188896579 -8298853 + AT_rich Low_complexity Low_complexity 1 21 0 6 2026 29 28 0 0 chr1 188899483 188899519 -8295913 + AT_rich Low_complexity Low_complexity 1 36 0 6 2026 318 295 48 26 chr1 188899532 188899749 -8295683 + L1M5 LINE L1 2595 2818 -3328 6 2026 354 303 178 16 chr1 188899806 188900064 -8295368 + L1M5 LINE L1 2960 3259 -2887 6 2026 226 235 14 42 chr1 188900162 188900233 -8295199 + RLTR13B2 LTR ERVK 241 309 -513 6 2026 374 329 71 33 chr1 188900237 188900573 -8294859 + L1M5 LINE L1 3411 3759 -2387 6 2026 271 281 62 0 chr1 188902449 188902545 -8292887 - MER33 DNA MER1_type -1 323 222 6 2026 2927 18 0 0 chr1 188902685 188903023 -8292409 - ORR1A0 LTR MaLR -8 338 1 6 2026 15600 41 2 1 chr1 188903023 188904811 -8290621 - ORR1A0-int LTR MaLR 0 1792 2 6 2026 1289 124 43 5 chr1 188905433 188905619 -8289813 - B2_Mm2 SINE B2 -1 194 2 6 2026 323 138 0 44 chr1 188905665 188905756 -8289676 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 2026 228 407 73 10 chr1 188906120 188906326 -8289106 + Charlie24 DNA MER1_type 971 1189 -1261 6 2026 349 261 3 15 chr1 188906512 188906616 -8288816 + PB1D10 SINE Alu 10 111 -9 6 2026 598 270 88 21 chr1 188907642 188907679 -8287753 - MT2A LTR ERVL -10 523 488 6 2026 420 20 0 0 chr1 188907679 188907728 -8287704 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 2026 598 270 88 21 chr1 188907728 188907883 -8287549 - MT2A LTR ERVL -46 487 318 6 2026 690 227 39 108 chr1 188907893 188908125 -8287307 - MT2A LTR ERVL -317 216 1 6 2026 821 250 17 98 chr1 188909361 188909596 -8285836 + B3 SINE B2 1 216 0 6 2026 214 244 44 99 chr1 188909895 188909986 -8285446 - PB1D9 SINE Alu -8 112 27 6 2026 29 60 0 0 chr1 188910413 188910463 -8284969 + AT_rich Low_complexity Low_complexity 1 50 0 6 2026 310 349 121 34 chr1 188910588 188911151 -8284281 + L2b LINE L2 1897 2508 -911 6 2026 751 103 27 54 chr1 188911273 188911421 -8284011 + CT-rich Low_complexity Low_complexity 33 180 0 6 2026 3600 30 5 0 chr1 188911421 188911814 -8283618 + MTA_Mm LTR MaLR 1 395 -1 6 2026 966 57 22 33 chr1 188911816 188911997 -8283435 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 2026 751 103 27 54 chr1 188911997 188912029 -8283403 + polypyrimidine Low_complexity Low_complexity 2 32 0 6 2026 914 111 84 49 chr1 188912034 188912176 -8283256 - B1_Mur3 SINE Alu 0 149 3 6 2026 441 0 0 0 chr1 188912371 188912420 -8283012 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 2026 806 303 51 0 chr1 188912428 188912662 -8282770 - B4A SINE B4 -46 246 1 6 2026 201 145 16 31 chr1 188912823 188912887 -8282545 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 2026 355 346 30 8 chr1 188913073 188913204 -8282228 + L2b LINE L2 3230 3363 -12 6 2026 279 288 42 110 chr1 188913831 188914177 -8281255 + L1MC4 LINE L1 871 1216 -4999 6 2026 666 284 0 80 chr1 188914177 188914376 -8281056 + B3A SINE B2 1 183 -15 6 2026 279 288 42 110 chr1 188914376 188914402 -8281030 + L1MC4 LINE L1 1217 1237 -4978 6 2026 228 35 0 0 chr1 188914402 188914431 -8281001 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 2026 279 288 42 110 chr1 188914431 188914647 -8280785 + L1MC4 LINE L1 1238 1420 -4795 6 2026 506 79 13 0 chr1 188914808 188914884 -8280548 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 2026 241 314 104 9 chr1 188914945 188915051 -8280381 - L1M2 LINE L1 -517 5780 5665 6 2026 242 256 37 0 chr1 188916230 188916312 -8279120 + GA-rich Low_complexity Low_complexity 1 85 0 6 2026 349 352 215 4 chr1 188917385 188917613 -8277819 + B4A SINE B4 3 278 -14 6 2026 497 292 0 0 chr1 188918281 188918387 -8277045 + B1F1 SINE Alu 7 112 -37 6 2026 297 287 131 0 chr1 188919318 188919440 -8275992 + RSINE1 SINE B4 14 151 -14 6 2026 285 278 0 14 chr1 188919795 188919868 -8275564 + MLT-int LTR MaLR 683 754 -981 6 2026 636 261 223 36 chr1 188919984 188920414 -8275018 - L1MA7 LINE L1 -163 6005 5482 6 2026 207 0 0 0 chr1 188920414 188920437 -8274995 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 2026 636 287 144 49 chr1 188920437 188920550 -8274882 - L1MA7 LINE L1 -831 5481 5374 6 2026 807 324 75 50 chr1 188920548 188921107 -8274325 - L1MA7 LINE L1 -872 5268 4696 6 2026 208 237 0 63 chr1 188922214 188922277 -8273155 + C-rich Low_complexity Low_complexity 4 62 0 6 2026 263 374 0 0 chr1 188922963 188923094 -8272338 + (GGATG)n Simple_repeat Simple_repeat 5 135 0 6 2026 25 51 0 0 chr1 188924202 188924241 -8271191 + AT_rich Low_complexity Low_complexity 1 39 0 6 2026 466 287 72 13 chr1 188924522 188924674 -8270758 - RSINE1 SINE B4 -2 163 3 6 2026 206 118 0 0 chr1 188927008 188927042 -8268390 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 2026 337 264 35 0 chr1 188927926 188928013 -8267419 - MLT1D LTR MaLR -83 422 333 6 2026 1590 201 68 98 chr1 188928064 188928748 -8266684 + Lx8 LINE L1 5276 5761 -119 6 2026 1465 97 63 0 chr1 188928748 188928955 -8266477 + L1_Mus1 LINE L1 6348 6567 0 6 2026 496 241 191 17 chr1 188928955 188928979 -8266453 + Lx8 LINE L1 5765 5792 -1681 6 2026 186 43 0 0 chr1 188928993 188929016 -8266416 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 2026 5200 260 73 22 chr1 188929186 188930744 -8264688 + Lx7 LINE L1 5781 7418 -278 6 2026 21 36 0 0 chr1 188930791 188930819 -8264613 + AT_rich Low_complexity Low_complexity 1 28 0 6 2026 829 294 15 46 chr1 188931410 188931670 -8263762 - MTE2b LTR MaLR -11 368 117 6 2026 364 279 35 43 chr1 188931669 188931785 -8263647 - MTEa LTR MaLR -203 176 62 6 2026 494 267 46 13 chr1 188931756 188931908 -8263524 + RCHARR1 DNA MER1_type 256 412 -562 6 2026 440 201 56 51 chr1 188932101 188932279 -8263153 + RMER17C LTR ERVK 91 269 -141 6 2026 1340 221 148 54 chr1 188932304 188932805 -8262627 + RCHARR1 DNA MER1_type 425 972 -2 6 2026 243 0 0 0 chr1 188932910 188932937 -8262495 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 2026 430 245 239 41 chr1 188932960 188933203 -8262229 - B4A SINE B4 0 292 2 6 2026 201 287 103 69 chr1 188933245 188933361 -8262071 - MIR SINE MIR -76 186 67 6 2026 4184 32 4 2 chr1 188933639 188934104 -8261328 - L1Md_T LINE L1 0 6582 6117 6 2026 257 270 68 51 chr1 188934761 188934878 -8260554 + PB1D7 SINE Alu 1 119 -1 6 2026 1223 34 0 0 chr1 188936045 188936192 -8259240 - L1Md_T LINE L1 0 6582 6436 6 2026 201 114 0 0 chr1 188936635 188936653 -8258779 + (CAAA)n Simple_repeat Simple_repeat 2 19 0 6 2026 647 171 169 8 chr1 188936653 188936777 -8258655 + B1_Mus1 SINE Alu 5 148 0 6 2026 201 114 0 0 chr1 188936777 188936793 -8258639 + (CAAA)n Simple_repeat Simple_repeat 4 19 0 6 2026 2206 138 34 14 chr1 188937066 188937418 -8258014 + RLTR15 LTR ERVK 1 359 0 6 2026 279 0 0 0 chr1 188938464 188938495 -8256937 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 2026 241 307 19 19 chr1 188939202 188939305 -8256127 + GA-rich Low_complexity Low_complexity 4 106 0 6 2026 331 361 101 37 chr1 188939606 188939954 -8255478 + MLT1F LTR MaLR 7 376 -172 6 2026 228 266 31 0 chr1 188940608 188940672 -8254760 + L1M5 LINE L1 5167 5232 -914 6 2026 201 121 0 0 chr1 188940792 188940825 -8254607 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 2026 242 203 116 0 chr1 188940831 188940900 -8254532 + L1M3 LINE L1 5812 5888 -295 6 2026 1272 48 0 7 chr1 188941549 188941697 -8253735 - B1_Mus2 SINE Alu 0 147 1 6 2026 3302 235 60 33 chr1 188941932 188942833 -8252599 - RMER1C Other Other 0 1342 418 6 2026 586 201 299 30 chr1 188943867 188944031 -8251401 + B3 SINE B2 3 210 -6 6 2026 26 0 0 0 chr1 188944549 188944575 -8250857 + AT_rich Low_complexity Low_complexity 1 26 0 6 2026 264 158 0 0 chr1 188947385 188947442 -8247990 + A-rich Low_complexity Low_complexity 5 61 0 6 2026 312 70 0 0 chr1 188947439 188947482 -8247950 + (GGGGA)n Simple_repeat Simple_repeat 4 46 0 6 2026 239 267 90 25 chr1 188948714 188948817 -8246615 + B4A SINE B4 83 288 -4 6 2026 249 174 0 0 chr1 188948822 188948891 -8246541 + GA-rich Low_complexity Low_complexity 2 70 0 6 2026 632 245 197 0 chr1 188949009 188949303 -8246129 + L1MCa LINE L1 963 1314 -5194 6 2026 498 288 129 0 chr1 188949370 188949540 -8245892 - RCHARR1 DNA MER1_type -782 192 1 6 2026 313 274 9 19 chr1 188949576 188949684 -8245748 + GA-rich Low_complexity Low_complexity 2 108 0 6 2026 2823 133 2 17 chr1 188950967 188951434 -8243998 + L1_Mur2 LINE L1 3366 3825 -2052 6 2026 2746 81 8 10 chr1 188951435 188951823 -8243609 + RLTR9D LTR ERVK 1 387 -16 6 2026 11980 104 87 49 chr1 188951828 188952846 -8242586 + L1_Mus3 LINE L1 3826 4967 -916 6 2026 243 198 74 95 chr1 188952846 188952941 -8242491 - RMER20A LTR ERVK -261 255 163 6 2026 11980 104 87 49 chr1 188952941 188953175 -8242257 + L1_Mus3 LINE L1 4968 5231 -652 6 2026 351 0 0 0 chr1 188953175 188953214 -8242218 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 2026 243 0 0 0 chr1 188953214 188953240 -8242192 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 2026 11980 78 35 15 chr1 188953240 188954616 -8240816 + L1_Mus3 LINE L1 5232 6638 0 6 2026 997 247 22 9 chr1 188955007 188955236 -8240196 + Lx5 LINE L1 6633 6864 -186 6 2026 308 261 11 22 chr1 188955550 188955640 -8239792 + PB1D9 SINE Alu 32 120 0 6 2026 252 217 17 0 chr1 188955958 188956018 -8239414 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 2026 396 354 162 24 chr1 188956197 188956573 -8238859 + Arthur1 DNA Tip100 214 641 -3306 6 2026 401 265 46 133 chr1 188956568 188956603 -8238829 + B4A SINE B4 66 172 -120 7 2026 718 174 29 57 chr1 188956603 188956743 -8238689 + B1_Mur1 SINE Alu 9 144 -5 7 2026 401 265 46 133 chr1 188956743 188956764 -8238668 + B4A SINE B4 173 244 -48 7 2026 286 320 0 0 chr1 188957082 188957160 -8238272 + CT-rich Low_complexity Low_complexity 46 123 0 7 2026 243 333 13 0 chr1 188957160 188957238 -8238194 - ID4_ SINE ID -1 82 4 7 2026 23 54 0 0 chr1 188957368 188957405 -8238027 + AT_rich Low_complexity Low_complexity 1 37 0 7 2026 605 267 0 36 chr1 188958553 188958693 -8236739 + B1F SINE Alu 3 137 -12 7 2026 1886 254 98 29 chr1 188959552 188960172 -8235260 - Lx8 LINE L1 -7 7466 6804 7 2026 492 257 0 0 chr1 188963577 188963678 -8231754 - RSINE1 SINE B4 -61 104 4 7 2026 301 338 46 40 chr1 188966494 188966645 -8228787 + MIR SINE MIR 58 209 -53 7 2026 262 354 81 13 chr1 188967163 188967312 -8228120 + LTR16A LTR ERVL 170 328 -123 7 2026 238 283 51 61 chr1 188967374 188967472 -8227960 + LTR16A LTR ERVL 541 637 -14 7 2026 983 119 88 6 chr1 188968308 188968468 -8226964 + B2_Mm2 SINE B2 13 185 -10 7 2026 225 302 46 11 chr1 188968478 188968565 -8226867 + L2a LINE L2 3260 3349 -77 7 2026 335 241 37 37 chr1 188968942 188969024 -8226408 - RSINE1 SINE B4 -81 84 3 7 2026 304 269 113 19 chr1 188969409 188969515 -8225917 + MLT1A0 LTR MaLR 180 295 -70 7 2026 282 116 0 0 chr1 188970421 188970464 -8224968 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 2026 815 211 105 50 chr1 188970543 188970754 -8224678 + Lx7 LINE L1 7369 7511 -185 7 2026 1475 86 16 0 chr1 188970754 188970941 -8224491 - B2_Mm2 SINE B2 -5 190 1 7 2026 815 187 142 84 chr1 188970941 188971132 -8224300 + Lx7 LINE L1 7512 7696 0 7 2026 3542 159 40 7 chr1 188971498 188972093 -8223339 - RLTR17 LTR ERVK 0 692 78 7 2026 495 0 0 0 chr1 188972093 188972148 -8223284 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 2026 3340 193 43 23 chr1 188972421 188973122 -8222310 + Lx4B LINE L1 6344 7058 0 7 2026 387 0 0 0 chr1 188973184 188973227 -8222205 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 2026 500 158 11 0 chr1 188973277 188973372 -8222060 + (TA)n Simple_repeat Simple_repeat 2 97 0 7 2026 508 199 84 49 chr1 188973996 188974139 -8221293 + B1_Mur1 SINE Alu 1 148 -1 7 2026 280 213 107 0 chr1 188975835 188975910 -8219522 - B1F2 SINE Alu -66 83 1 7 2026 192 40 0 0 chr1 188978180 188978205 -8217227 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 2026 277 292 28 0 chr1 188978446 188978518 -8216914 - MTD LTR MaLR -78 341 268 7 2026 727 270 96 46 chr1 188978556 188978836 -8216596 - MTD LTR MaLR -124 295 2 7 2026 441 0 0 0 chr1 188979415 188979464 -8215968 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 2026 276 30 0 0 chr1 188979540 188979573 -8215859 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 2026 1143 72 0 21 chr1 188981471 188981613 -8213819 + B1_Mus1 SINE Alu 2 140 -8 7 2026 529 321 17 67 chr1 188981813 188981993 -8213439 - B4 SINE B4 0 292 122 7 2026 1429 213 134 145 chr1 188982032 188982571 -8212861 - MT2A LTR ERVL 0 533 1 7 2026 3156 135 71 130 chr1 188983256 188983989 -8211443 + RMER6C LTR ERVK 1 690 0 7 2026 777 308 65 29 chr1 188985121 188985539 -8209893 + L1MB8 LINE L1 5644 6076 -102 7 2026 25 31 0 0 chr1 188985916 188985948 -8209484 + AT_rich Low_complexity Low_complexity 1 32 0 7 2026 621 316 123 41 chr1 188986539 188986885 -8208547 + MLT1F2 LTR MaLR 43 414 -155 7 2026 824 290 57 61 chr1 188987598 188987618 -8207814 + Lx9 LINE L1 902 919 -6689 7 2026 564 254 169 77 chr1 188987618 188987955 -8207477 + RLTR9A LTR ERVK 1 368 0 7 2026 3073 261 31 63 chr1 188987955 188989313 -8206119 + Lx9 LINE L1 920 2235 -3612 7 2026 4687 243 107 88 chr1 188989324 188990720 -8204712 + Lx9 LINE L1 3676 5075 -772 7 2026 225 94 0 0 chr1 188990720 188990752 -8204680 + (CAAAT)n Simple_repeat Simple_repeat 3 34 0 7 2026 4687 277 94 50 chr1 188990752 188992449 -8202983 + Lx9 LINE L1 5076 7138 -506 7 2026 464 305 65 9 chr1 188992456 188992621 -8202811 + Lx9 LINE L1 7259 7428 -216 7 2026 210 71 0 0 chr1 188992621 188992649 -8202783 + (CCA)n Simple_repeat Simple_repeat 1 28 0 7 2026 464 305 65 9 chr1 188992649 188992698 -8202734 + Lx9 LINE L1 7429 7485 -159 7 2026 30 0 0 0 chr1 188993125 188993155 -8202277 + AT_rich Low_complexity Low_complexity 1 30 0 7 2026 416 279 152 70 chr1 188993286 188993602 -8201830 + L1MEe LINE L1 470 811 -4043 7 2026 326 256 0 0 chr1 188993857 188993935 -8201497 + B1_Mur3 SINE Alu 7 84 -65 7 2026 1440 159 185 0 chr1 188994810 188995112 -8200320 + ORR1B1 LTR MaLR 35 392 -2 7 2026 303 267 13 26 chr1 188996759 188996836 -8198596 - B4A SINE B4 -215 77 2 7 2026 259 301 40 8 chr1 188997072 188997196 -8198236 - Lx5 LINE L1 -1142 5908 5781 7 2026 21 0 0 0 chr1 188997901 188997922 -8197510 + AT_rich Low_complexity Low_complexity 1 21 0 7 2026 22 35 0 0 chr1 188998374 188998403 -8197029 + AT_rich Low_complexity Low_complexity 1 29 0 7 2026 3110 284 74 28 chr1 188998484 188999569 -8195863 + Lx7 LINE L1 6225 7359 -337 7 2026 243 0 0 0 chr1 188999622 188999649 -8195783 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 2026 228 266 0 30 chr1 188999661 188999727 -8195705 + Lx7 LINE L1 7613 7676 -20 7 2026 225 0 0 0 chr1 188999901 188999926 -8195506 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 2026 587 367 32 8 chr1 189000002 189000249 -8195183 - B4A SINE B4 -35 257 5 1 2026 24 32 0 0 chr1 189000370 189000401 -8195031 + AT_rich Low_complexity Low_complexity 1 31 0 2 2026 387 278 66 29 chr1 189000543 189000680 -8194752 - B1F SINE Alu -2 147 6 3 2026 322 295 91 45 chr1 189000680 189000742 -8194690 - ID_B1 SINE B4 -2 222 15 4 2026 2147 93 24 21 chr1 189001575 189001903 -8193529 - ORR1A4 LTR MaLR 0 329 1 5 2026 262 270 64 57 chr1 189002191 189002348 -8193084 - B3A SINE B2 -12 186 29 6 2026 282 281 51 34 chr1 189002529 189002647 -8192785 - MIRb SINE MIR -58 210 91 7 2026 2092 175 86 0 chr1 189003209 189003591 -8191841 - MTC LTR MaLR -6 415 1 8 2026 24 0 0 0 chr1 189004110 189004134 -8191298 + AT_rich Low_complexity Low_complexity 1 24 0 9 2026 27 0 0 0 chr1 189004172 189004199 -8191233 + AT_rich Low_complexity Low_complexity 1 27 0 1 2027 860 294 50 39 chr1 189006329 189006612 -8188820 - B4A SINE B4 -1 291 6 1 2027 1418 265 80 21 chr1 189008043 189008521 -8186911 - RMER5 LTR ERV1 -2 532 27 1 2027 223 264 180 38 chr1 189008963 189009125 -8186307 + B3 SINE B2 4 188 -28 1 2027 216 297 0 0 chr1 189010403 189010467 -8184965 + CT-rich Low_complexity Low_complexity 2 65 0 1 2027 243 0 0 0 chr1 189011053 189011080 -8184352 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 1 2027 1158 46 0 0 chr1 189011101 189011254 -8184178 + (CACAG)n Simple_repeat Simple_repeat 4 156 0 1 2027 1194 100 0 0 chr1 189011258 189011438 -8183994 + (CAAAG)n Simple_repeat Simple_repeat 1 180 0 1 2027 286 264 56 0 chr1 189013425 189013497 -8181935 + B4 SINE B4 208 283 -9 1 2027 944 164 0 6 chr1 189014063 189014241 -8181191 + GA-rich Low_complexity Low_complexity 4 180 0 1 2027 204 40 0 0 chr1 189014242 189014267 -8181165 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 2 2027 21 57 0 0 chr1 189014976 189015011 -8180421 + AT_rich Low_complexity Low_complexity 1 35 0 2 2027 1061 92 4 11 chr1 189015040 189015309 -8180123 + (TTTC)n Simple_repeat Simple_repeat 1 266 0 2 2027 243 0 0 0 chr1 189015310 189015337 -8180095 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 2027 1009 98 6 22 chr1 189015346 189015524 -8179908 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 2027 599 275 7 21 chr1 189015524 189015665 -8179767 - RSINE1 SINE B4 -21 144 6 2 2027 600 178 10 0 chr1 189015992 189016093 -8179339 - B3 SINE B2 -86 130 29 2 2027 447 66 0 78 chr1 189016432 189016547 -8178885 + (AGGGGG)n Simple_repeat Simple_repeat 6 111 0 2 2027 271 335 92 31 chr1 189016547 189016710 -8178722 - ORR1E LTR MaLR -168 191 19 2 2027 445 307 84 42 chr1 189017043 189017186 -8178246 - B1F2 SINE Alu 0 149 1 2 2027 186 133 0 0 chr1 189017289 189017319 -8178113 - MIRc SINE MIR -123 145 116 3 2027 353 84 28 14 chr1 189017349 189017421 -8178011 - L1Md_F3 LINE L1 -1 6583 6511 3 2027 15739 46 4 1 chr1 189018492 189021228 -8174204 - L1Md_F3 LINE L1 -14 6570 3829 3 2027 4873 51 6 0 chr1 189021224 189021874 -8173558 + L1Md_F3 LINE L1 3172 3825 -2058 3 2027 642 300 103 64 chr1 189022107 189022388 -8173044 - B4A SINE B4 0 292 1 3 2027 574 253 137 0 chr1 189022821 189023011 -8172421 + Lx9 LINE L1 6638 6853 -791 3 2027 234 153 56 60 chr1 189023116 189023373 -8172059 + (GTGTG)n Simple_repeat Simple_repeat 1 255 0 3 2027 329 161 43 87 chr1 189023423 189023607 -8171825 + (GTGTG)n Simple_repeat Simple_repeat 2 177 0 3 2027 330 222 44 73 chr1 189023615 189023751 -8171681 + Lx9 LINE L1 6857 6988 -656 3 2027 453 335 61 11 chr1 189023751 189024014 -8171418 + Lx9 LINE L1 7143 7418 -226 3 2027 437 256 180 23 chr1 189024353 189024525 -8170907 - B4 SINE B4 -2 290 92 3 2027 276 293 13 13 chr1 189024636 189024712 -8170720 + PB1D10 SINE Alu 36 111 -6 3 2027 302 271 11 23 chr1 189024952 189025039 -8170393 + GA-rich Low_complexity Low_complexity 6 91 0 3 2027 330 205 39 0 chr1 189025083 189025161 -8170271 + ID_B1 SINE B4 137 217 -7 3 2027 332 296 10 20 chr1 189026272 189026372 -8169060 + PB1 SINE Alu 22 120 -7 4 2027 477 248 25 6 chr1 189026424 189026565 -8168867 - B3A SINE B2 -36 180 33 4 2027 249 349 55 0 chr1 189027080 189027189 -8168243 - PB1D10 SINE Alu 0 117 3 4 2027 21 57 0 0 chr1 189027200 189027235 -8168197 + AT_rich Low_complexity Low_complexity 1 35 0 4 2027 521 279 23 0 chr1 189027248 189027377 -8168055 - RSINE1 SINE B4 -33 132 1 4 2027 488 178 0 9 chr1 189027809 189027917 -8167515 + GA-rich Low_complexity Low_complexity 2 108 0 4 2027 1298 73 6 0 chr1 189027917 189028096 -8167336 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 2027 289 340 100 19 chr1 189031023 189031383 -8164049 + L1MC4 LINE L1 7249 7637 -405 4 2027 362 322 27 0 chr1 189031568 189031717 -8163715 - Lx8 LINE L1 -148 7325 7173 4 2027 284 284 14 0 chr1 189031977 189032051 -8163381 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 2027 366 312 6 106 chr1 189032892 189033071 -8162361 - RSINE1 SINE B4 -2 163 3 5 2027 316 215 10 45 chr1 189033604 189033726 -8161706 - B1_Mus1 SINE Alu -2 115 1 5 2027 1236 113 17 0 chr1 189034141 189034318 -8161114 + B2_Mm2 SINE B2 2 181 -14 5 2027 343 193 17 36 chr1 189034376 189034480 -8160952 + B2_Mm2 SINE B2 22 124 -92 5 2027 421 145 34 57 chr1 189034477 189034565 -8160867 + ORR1A4-int LTR MaLR 138 223 -1147 5 2027 7212 162 37 59 chr1 189034561 189036164 -8159268 + ORR1A4-int LTR MaLR 394 1961 -2 5 2027 2080 139 19 3 chr1 189036159 189036483 -8158949 + ORR1A4 LTR MaLR 1 329 0 5 2027 21 36 0 0 chr1 189036878 189036906 -8158526 + AT_rich Low_complexity Low_complexity 1 28 0 5 2027 322 374 0 6 chr1 189037600 189037775 -8157657 - Lx8 LINE L1 -861 6612 6439 5 2027 403 232 45 0 chr1 189038696 189038808 -8156624 - B1F SINE Alu -8 141 25 5 2027 180 0 0 0 chr1 189038913 189038933 -8156499 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 2027 198 71 0 0 chr1 189040070 189040098 -8155334 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 5 2027 25 0 0 0 chr1 189040391 189040416 -8155016 + AT_rich Low_complexity Low_complexity 1 25 0 6 2027 1579 47 0 0 chr1 189040416 189040607 -8154825 - B2_Mm1t SINE B2 -1 192 2 6 2027 261 0 0 0 chr1 189041118 189041147 -8154285 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 2027 1057 93 0 0 chr1 189041152 189041291 -8154141 - B1_Mus1 SINE Alu -5 143 5 6 2027 354 239 100 9 chr1 189041446 189041556 -8153876 - PB1 SINE Alu -7 120 1 6 2027 788 100 0 8 chr1 189042742 189042863 -8152569 + (TTC)n Simple_repeat Simple_repeat 2 121 0 6 2027 263 262 28 37 chr1 189043134 189043241 -8152191 - PB1D9 SINE Alu -13 107 2 6 2027 377 281 51 120 chr1 189043288 189043446 -8151986 - B3A SINE B2 -35 163 17 6 2027 207 0 0 0 chr1 189043446 189043469 -8151963 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 6 2027 269 162 100 29 chr1 189043515 189043585 -8151847 - ID4_ SINE ID -5 78 4 6 2027 25 0 0 0 chr1 189043696 189043721 -8151711 + AT_rich Low_complexity Low_complexity 1 25 0 7 2027 1205 186 27 9 chr1 189044049 189044271 -8151161 + URR1A DNA MER1_type 1 226 0 7 2027 22 0 0 0 chr1 189045830 189045852 -8149580 + AT_rich Low_complexity Low_complexity 1 22 0 7 2027 830 232 38 19 chr1 189046075 189046286 -8149146 + B3 SINE B2 2 216 0 7 2027 188 0 74 0 chr1 189046991 189047018 -8148414 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7 2027 256 173 58 0 chr1 189047024 189047076 -8148356 - B1_Mus2 SINE Alu -19 128 74 7 2027 507 151 33 20 chr1 189047777 189047887 -8147545 + B1_Mm SINE Alu 45 149 0 7 2027 195 42 0 0 chr1 189047910 189047934 -8147498 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7 2027 354 250 0 0 chr1 189048035 189048107 -8147325 + MER58B DNA MER1_type 269 340 -1 7 2027 646 296 134 14 chr1 189048752 189048975 -8146457 - B4A SINE B4 -14 278 29 7 2027 479 277 8 43 chr1 189049043 189049160 -8146272 - PB1D7 SINE Alu -6 114 2 8 2027 210 37 0 0 chr1 189049336 189049363 -8146069 + (T)n Simple_repeat Simple_repeat 1 27 0 8 2027 288 77 0 0 chr1 189050106 189050145 -8145287 + (TCC)n Simple_repeat Simple_repeat 1 39 0 8 2027 30 0 0 0 chr1 189050835 189050865 -8144567 + AT_rich Low_complexity Low_complexity 1 30 0 8 2027 228 163 0 0 chr1 189051581 189051624 -8143808 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 2027 375 313 80 51 chr1 189053431 189053569 -8141863 + RSINE1 SINE B4 24 165 0 8 2027 778 204 191 11 chr1 189053585 189053768 -8141664 - B3 SINE B2 0 216 1 8 2027 199 95 0 67 chr1 189054491 189054536 -8140896 + A-rich Low_complexity Low_complexity 4 45 0 8 2027 516 202 8 68 chr1 189055376 189055493 -8139939 + PB1D9 SINE Alu 4 113 -7 8 2027 190 261 145 0 chr1 189055974 189056043 -8139389 - MIRm SINE MIR -107 169 91 8 2027 253 221 103 28 chr1 189056181 189056288 -8139144 - PB1D10 SINE Alu -1 116 2 9 2027 1128 309 71 30 chr1 189060050 189060584 -8134848 + MER82 DNA MER2_type 95 650 -3 9 2027 807 163 265 17 chr1 189060621 189060802 -8134630 + URR1A DNA MER1_type 1 226 0 9 2027 194 324 70 0 chr1 189060879 189060950 -8134482 + MIRb SINE MIR 121 196 -72 9 2027 516 312 47 0 chr1 189061412 189061540 -8133892 + ID_B1 SINE B4 84 217 -7 9 2027 1592 151 133 3 chr1 189061664 189061950 -8133482 - ORR1A3 LTR MaLR -3 323 1 9 2027 535 156 99 49 chr1 189062145 189062287 -8133145 - B1_Mur2 SINE Alu 0 149 1 9 2027 1288 41 0 0 chr1 189063025 189063171 -8132261 + B1_Mus2 SINE Alu 2 147 0 9 2027 237 98 0 0 chr1 189063171 189063212 -8132220 + (A)n Simple_repeat Simple_repeat 1 41 0 9 2027 211 302 45 23 chr1 189064605 189064693 -8130739 - L2b LINE L2 -244 3131 3042 9 2027 404 262 0 0 chr1 189065706 189065786 -8129646 - ID_B1 SINE B4 -4 220 141 1 2027 222 377 35 62 chr1 189065709 189065822 -8129610 - PB1D10 SINE Alu -7 110 1 1 2027 221 362 50 14 chr1 189065886 189066026 -8129406 - B1F SINE Alu -3 146 2 1 2027 544 243 28 62 chr1 189066146 189066291 -8129141 + B1F2 SINE Alu 1 140 -9 1 2027 287 282 39 0 chr1 189067248 189067326 -8128106 - ID4_ SINE ID -2 81 1 1 2027 229 238 23 81 chr1 189067340 189067427 -8128005 - PB1D7 SINE Alu -1 119 38 1 2027 252 0 0 0 chr1 189068132 189068160 -8127272 + (GCCTG)n Simple_repeat Simple_repeat 2 29 0 1 2027 795 234 65 5 chr1 189068964 189069149 -8126283 + B3 SINE B2 4 199 -17 1 2027 246 303 128 96 chr1 189069834 189070053 -8125379 + B4A SINE B4 1 226 -66 1 2027 198 103 0 0 chr1 189074048 189074077 -8121355 + (TTTCC)n Simple_repeat Simple_repeat 3 31 0 1 2027 24 67 0 0 chr1 189074198 189074243 -8121189 + AT_rich Low_complexity Low_complexity 1 45 0 1 2027 342 0 0 0 chr1 189074498 189074536 -8120896 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 2027 292 267 122 19 chr1 189074652 189074759 -8120673 - Lx8 LINE L1 -203 7270 7153 1 2027 333 284 400 15 chr1 189074770 189075041 -8120391 - Lx8 LINE L1 -286 7187 6812 1 2027 1556 119 141 17 chr1 189076129 189076420 -8119012 - IAPEY3_LTR LTR ERVK -5 327 1 1 2027 450 79 0 0 chr1 189076648 189076711 -8118721 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1 2027 211 268 0 0 chr1 189077148 189077189 -8118243 - ID_B1 SINE B4 -99 125 85 1 2027 405 0 0 0 chr1 189077548 189077593 -8117839 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 2027 271 294 23 34 chr1 189077700 189077788 -8117644 + L2a LINE L2 3303 3389 -37 1 2027 881 284 49 82 chr1 189077797 189078185 -8117247 - MTE2a LTR MaLR 0 379 5 1 2027 652 248 23 0 chr1 189078766 189078899 -8116533 + B1_Mur2 SINE Alu 6 141 -8 1 2027 382 319 41 41 chr1 189079185 189079332 -8116100 - RSINE1 SINE B4 -8 157 11 1 2027 517 253 70 6 chr1 189079403 189079574 -8115858 - B3A SINE B2 -2 196 15 1 2027 706 228 15 58 chr1 189079968 189080173 -8115259 - B3A SINE B2 -1 197 2 1 2027 373 122 37 0 chr1 189080265 189080347 -8115085 + CT-rich Low_complexity Low_complexity 4 88 0 1 2027 425 278 38 82 chr1 189081354 189081538 -8113894 - ID_B1 SINE B4 -46 178 3 1 2027 448 310 75 12 chr1 189089275 189089448 -8105984 + B3A SINE B2 1 184 -14 1 2027 759 22 0 0 chr1 189091386 189091475 -8103957 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 2027 306 50 0 0 chr1 189091887 189091927 -8103505 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 2027 248 407 20 40 chr1 189092276 189092427 -8103005 + L2a LINE L2 3276 3423 -3 1 2027 562 224 26 0 chr1 189097201 189097317 -8098115 + B1_Mur1 SINE Alu 31 149 0 1 2027 508 241 9 35 chr1 189097707 189097823 -8097609 + PB1D10 SINE Alu 5 117 0 1 2027 308 324 96 5 chr1 189098792 189099012 -8096420 + L1M5 LINE L1 4729 4968 -1178 1 2027 234 316 13 0 chr1 189099091 189099167 -8096265 + L1M5 LINE L1 5089 5165 -981 1 2027 252 314 95 54 chr1 189099831 189099981 -8095451 + MIRc SINE MIR 24 177 -91 1 2027 525 105 0 0 chr1 189103952 189104047 -8091385 + (TCTG)n Simple_repeat Simple_repeat 4 98 0 1 2027 207 239 65 0 chr1 189104202 189104248 -8091184 - MER5A DNA MER1_type -102 87 39 1 2027 255 138 15 108 chr1 189105453 189105518 -8089914 - ID4_ SINE ID -3 80 22 1 2027 193 278 0 36 chr1 189105890 189105946 -8089486 + MIRm SINE MIR 220 273 -3 1 2027 833 134 7 0 chr1 189108728 189108877 -8086555 + (TTTC)n Simple_repeat Simple_repeat 1 150 0 1 2027 489 232 28 93 chr1 189108880 189109039 -8086393 - Lx9 LINE L1 -22 7622 7473 1 2027 189 0 0 0 chr1 189109039 189109060 -8086372 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 2027 489 232 28 93 chr1 189109060 189109147 -8086285 - Lx9 LINE L1 -172 7472 7392 1 2027 252 0 0 0 chr1 189109379 189109407 -8086025 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 2027 327 136 0 0 chr1 189109503 189109562 -8085870 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 2027 543 262 18 18 chr1 189109563 189109730 -8085702 + Charlie13a DNA Charlie 507 673 -841 1 2027 285 29 0 0 chr1 189110317 189110351 -8085081 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 2027 453 251 38 106 chr1 189112289 189112365 -8083067 - B4A SINE B4 -1 291 218 1 2027 216 0 0 0 chr1 189112365 189112389 -8083043 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 2027 453 251 38 106 chr1 189112389 189112405 -8083027 - B4A SINE B4 -75 217 207 1 2027 243 0 0 0 chr1 189112405 189112432 -8083000 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 2027 453 251 38 106 chr1 189112432 189112574 -8082858 - B4A SINE B4 -86 206 73 1 2027 186 133 0 0 chr1 189113311 189113341 -8082091 + (CTAA)n Simple_repeat Simple_repeat 2 31 0 1 2027 270 0 0 0 chr1 189113414 189113444 -8081988 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 2027 26 30 0 0 chr1 189113849 189113882 -8081550 + AT_rich Low_complexity Low_complexity 1 33 0 1 2027 291 256 24 0 chr1 189114422 189114504 -8080928 + PB1 SINE Alu 27 110 -17 1 2027 180 77 0 0 chr1 189114538 189114564 -8080868 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 2027 463 231 158 30 chr1 189115112 189115277 -8080155 + B4 SINE B4 107 292 0 1 2027 204 289 0 0 chr1 189115281 189115333 -8080099 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 2027 524 224 302 4 chr1 189116011 189116289 -8079143 + ORR1D2 LTR MaLR 2 362 -12 1 2027 305 242 21 52 chr1 189116564 189116660 -8078772 + PB1D10 SINE Alu 25 117 0 1 2027 300 327 8 58 chr1 189116679 189116799 -8078633 + PB1D10 SINE Alu 4 117 0 1 2027 352 299 46 46 chr1 189117020 189117171 -8078261 - B4A SINE B4 -136 156 6 1 2027 321 269 67 0 chr1 189117280 189117384 -8078048 - MLT2B3 LTR ERVL -443 111 1 1 2027 185 288 0 29 chr1 189117413 189117481 -8077951 + MIR SINE MIR 57 122 -140 1 2027 4873 146 115 20 chr1 189119518 189120484 -8074948 - Lx4B LINE L1 -5 7053 5996 1 2027 216 135 0 0 chr1 189121306 189121343 -8074089 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 2027 23 0 0 0 chr1 189121374 189121397 -8074035 + AT_rich Low_complexity Low_complexity 1 23 0 1 2027 1021 117 0 0 chr1 189121776 189121921 -8073511 + B1_Mus2 SINE Alu 3 147 0 1 2027 318 154 0 0 chr1 189122055 189122133 -8073299 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 2027 236 262 0 0 chr1 189122236 189122297 -8073135 + (TAG)n Simple_repeat Simple_repeat 1 61 0 1 2027 1216 176 10 5 chr1 189122316 189122522 -8072910 + B3 SINE B2 4 210 -6 1 2027 759 243 36 26 chr1 189122664 189122858 -8072574 - B3A SINE B2 -1 197 2 1 2027 333 189 11 22 chr1 189123762 189123854 -8071578 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 2027 429 70 0 0 chr1 189123854 189123911 -8071521 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 2027 315 0 0 0 chr1 189123912 189123947 -8071485 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 2027 552 210 72 7 chr1 189125544 189125683 -8069749 + B1_Mur1 SINE Alu 2 149 0 1 2027 459 0 0 0 chr1 189125898 189125949 -8069483 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 2027 473 250 122 22 chr1 189125950 189126089 -8069343 - B3A SINE B2 -43 155 3 1 2027 23 0 0 0 chr1 189126096 189126119 -8069313 + AT_rich Low_complexity Low_complexity 1 23 0 1 2027 3818 23 0 0 chr1 189129325 189129800 -8065632 - LTRIS_Mm LTR ERV1 -7 475 1 1 2027 285 195 256 0 chr1 189129803 189129885 -8065547 + ID_B1 SINE B4 115 217 -7 1 2027 237 286 117 109 chr1 189130690 189130973 -8064459 - MLT1C LTR MaLR -111 356 72 1 2027 336 48 0 0 chr1 189131113 189131155 -8064277 + (CTCTG)n Simple_repeat Simple_repeat 1 42 0 1 2027 249 304 108 11 chr1 189132384 189132477 -8062955 + PB1D9 SINE Alu 6 107 -13 1 2027 263 272 131 40 chr1 189133637 189133813 -8061619 + B3A SINE B2 5 196 -2 1 2027 429 268 47 40 chr1 189133979 189134127 -8061305 + B1F1 SINE Alu 1 149 0 1 2027 21 36 0 0 chr1 189135029 189135057 -8060375 + AT_rich Low_complexity Low_complexity 1 28 0 1 2027 365 344 39 13 chr1 189135071 189135227 -8060205 - RSINE1 SINE B4 -4 161 2 1 2027 1951 57 4 0 chr1 189136292 189136555 -8058877 - ORR1A2 LTR MaLR -8 319 56 1 253 612 0 0 0 chr1 189136878 189136946 -8058486 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 2028 483 18 0 0 chr1 189136946 189137001 -8058431 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 2028 249 316 13 0 chr1 189137014 189137093 -8058339 - B4A SINE B4 -92 200 121 1 2028 201 270 238 20 chr1 189137861 189138012 -8057420 + MIRb SINE MIR 11 194 -74 1 2028 567 153 0 0 chr1 189138395 189138493 -8056939 + CT-rich Low_complexity Low_complexity 2 99 0 1 2028 359 308 29 58 chr1 189140648 189140786 -8054646 + ID_B1 SINE B4 84 217 -7 1 2028 519 309 131 29 chr1 189141413 189141558 -8053874 + MER82 DNA MER2_type 14 160 -493 1 2028 387 0 0 0 chr1 189141558 189141601 -8053831 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 2028 270 0 0 0 chr1 189141601 189141630 -8053802 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 2028 519 309 131 29 chr1 189141630 189141796 -8053636 + MER82 DNA MER2_type 161 357 -296 1 2028 4013 75 71 13 chr1 189142330 189142882 -8052550 - MT2B2 LTR ERVL 0 584 1 1 2028 207 0 0 0 chr1 189143092 189143115 -8052317 + (CGTG)n Simple_repeat Simple_repeat 4 26 0 1 2028 345 47 0 0 chr1 189144604 189144647 -8050785 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 1 2028 216 224 35 0 chr1 189144647 189144705 -8050727 - L2a LINE L2 -13 3413 3354 1 2028 201 255 21 0 chr1 189145694 189145741 -8049691 + (CATG)n Simple_repeat Simple_repeat 4 51 0 1 2028 342 67 0 0 chr1 189146425 189146470 -8048962 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 2028 655 308 66 31 chr1 189146702 189146990 -8048442 + MTE2a LTR MaLR 77 374 -5 2 2028 289 271 37 9 chr1 189148667 189148775 -8046657 - PB1D9 SINE Alu -9 111 1 2 2028 683 292 180 25 chr1 189149850 189150244 -8045188 - MER70A LTR ERVL -14 458 4 2 2028 344 339 146 27 chr1 189152409 189152670 -8042762 + LFSINE_Vert SINE SINE 83 374 -85 2 2028 24 53 0 0 chr1 189153063 189153101 -8042331 + AT_rich Low_complexity Low_complexity 1 38 0 2 2028 378 284 47 48 chr1 189153902 189154093 -8041339 + L1_Mm LINE L1 5322 5508 -936 2 2028 1107 129 0 0 chr1 189154546 189154981 -8040451 + (TG)n Simple_repeat Simple_repeat 1 435 0 2 2028 198 0 0 0 chr1 189155803 189155825 -8039607 + (GTTTG)n Simple_repeat Simple_repeat 1 22 0 2 2028 188 330 33 11 chr1 189156323 189156415 -8039017 - MIR SINE MIR -88 174 81 2 2028 258 254 0 27 chr1 189156849 189156922 -8038510 + ID4_ SINE ID 2 72 -11 2 2028 180 0 0 0 chr1 189157142 189157162 -8038270 + (A)n Simple_repeat Simple_repeat 1 20 0 2 2028 1739 68 0 21 chr1 189157293 189157532 -8037900 + L1Md_F2 LINE L1 6348 6581 -1 2 2028 455 233 146 6 chr1 189159800 189159964 -8035468 + B4A SINE B4 9 195 -97 2 2028 237 33 0 0 chr1 189162043 189162073 -8033359 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 2028 320 315 0 44 chr1 189162385 189162498 -8032934 + B4 SINE B4 180 287 -5 2 2028 21 36 0 0 chr1 189162544 189162572 -8032860 + AT_rich Low_complexity Low_complexity 1 28 0 2 2028 1320 71 0 0 chr1 189162928 189163690 -8031742 + (TG)n Simple_repeat Simple_repeat 1 762 0 2 2028 331 338 73 22 chr1 189167234 189167509 -8027923 + B4A SINE B4 1 289 -3 2 2028 300 111 0 0 chr1 189167641 189167686 -8027746 + (A)n Simple_repeat Simple_repeat 1 45 0 2 2028 227 263 26 13 chr1 189168736 189168813 -8026619 + ID4_ SINE ID 2 79 -4 2 2028 315 0 0 0 chr1 189169513 189169548 -8025884 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 2028 2810 69 79 3 chr1 189169607 189169985 -8025447 - MTB_Mm LTR MaLR 0 407 1 2 2028 238 269 15 0 chr1 189170625 189170692 -8024740 - ID4 SINE ID -14 69 2 2 2028 532 311 90 0 chr1 189171657 189171879 -8023553 + B4A SINE B4 43 284 -8 2 2028 449 266 35 17 chr1 189174971 189175086 -8020346 + B1F SINE Alu 30 146 -3 2 2028 216 0 0 0 chr1 189175306 189175330 -8020102 + (A)n Simple_repeat Simple_repeat 1 24 0 2 2028 230 284 103 15 chr1 189175642 189175710 -8019722 - ID4_ SINE ID -4 79 6 2 2028 214 238 0 0 chr1 189175781 189175823 -8019609 + ID4_ SINE ID 18 59 -24 2 2028 222 311 87 10 chr1 189176632 189176736 -8018696 + PB1D10 SINE Alu 2 113 -4 2 2028 242 173 38 19 chr1 189181459 189181512 -8013920 - Kanga1a DNA Tc2 0 754 701 2 2028 188 289 145 0 chr1 189181847 189181923 -8013509 + MIR SINE MIR 149 235 -27 2 2028 710 236 0 94 chr1 189182145 189182337 -8013095 + B3A SINE B2 25 198 0 2 2028 23 0 0 0 chr1 189183850 189183873 -8011559 + AT_rich Low_complexity Low_complexity 1 23 0 2 2028 373 178 52 70 chr1 189185616 189185731 -8009701 - PB1D7 SINE Alu -7 113 1 2 2028 216 0 0 0 chr1 189186066 189186090 -8009342 + (A)n Simple_repeat Simple_repeat 1 24 0 2 2028 616 300 32 39 chr1 189186480 189186761 -8008671 - B4A SINE B4 -12 280 2 2 2028 21 0 0 0 chr1 189186782 189186803 -8008629 + AT_rich Low_complexity Low_complexity 1 21 0 2 2028 571 67 22 0 chr1 189186890 189186979 -8008453 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2 2028 694 257 67 88 chr1 189188912 189189241 -8006191 - MTE2a LTR MaLR -57 322 1 2 2028 441 303 41 0 chr1 189189320 189189442 -8005990 + MLT1A1 LTR MaLR 6 132 -276 2 2028 245 232 71 0 chr1 189189592 189189648 -8005784 + MLT1A1 LTR MaLR 265 324 -41 2 2028 360 0 0 0 chr1 189189648 189189688 -8005744 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 2028 360 0 0 0 chr1 189189688 189189727 -8005705 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 2028 277 289 61 10 chr1 189189866 189189964 -8005468 + PB1D10 SINE Alu 1 103 -14 2 2028 2073 158 58 71 chr1 189190258 189190652 -8004780 - ORR1B1 LTR MaLR 0 394 6 2 2028 1175 228 136 33 chr1 189190657 189191025 -8004407 + MTD LTR MaLR 1 406 -13 2 2028 456 99 0 0 chr1 189191179 189191250 -8004182 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 2028 582 54 0 0 chr1 189191313 189191387 -8004045 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 2028 670 294 6 42 chr1 189191389 189191556 -8003876 - RSINE1 SINE B4 -3 162 2 2 2028 287 363 74 50 chr1 189192169 189192427 -8003005 + ORR1D2 LTR MaLR 6 269 -101 2 2028 411 346 66 0 chr1 189192447 189192583 -8002849 - RSINE1 SINE B4 -18 147 3 2 2028 595 248 24 169 chr1 189192995 189193243 -8002189 + MTE2b LTR MaLR 19 230 -149 2 2028 350 250 87 29 chr1 189193244 189193450 -8001982 - RMER17D LTR ERVK -341 548 331 2 2028 6481 118 14 10 chr1 189193596 189194566 -8000866 + Lx2B LINE L1 5643 6616 -384 2 2028 417 131 0 0 chr1 189194696 189194780 -8000652 + (TCTG)n Simple_repeat Simple_repeat 2 85 0 2 2028 217 333 0 27 chr1 189194814 189194888 -8000544 - B4 SINE B4 -220 72 1 2 2028 210 209 92 15 chr1 189195285 189195416 -8000016 + (TCTA)n Simple_repeat Simple_repeat 3 143 0 2 2028 276 30 0 0 chr1 189195789 189195822 -7999610 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2 2028 845 256 5 14 chr1 189196419 189196633 -7998799 + B3 SINE B2 4 215 -1 2 2028 324 83 0 0 chr1 189197198 189197246 -7998186 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2 2028 754 176 6 11 chr1 189197247 189197425 -7998007 + CT-rich Low_complexity Low_complexity 2 178 0 2 2028 198 0 0 0 chr1 189197997 189198019 -7997413 + (T)n Simple_repeat Simple_repeat 1 22 0 2 2028 309 109 0 0 chr1 189199298 189199353 -7996079 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2 2028 408 239 113 17 chr1 189199353 189199468 -7995964 - B1F SINE Alu 0 149 24 2 2028 512 282 0 64 chr1 189200661 189200801 -7994631 + RSINE1 SINE B4 2 132 -33 2 2028 1161 280 51 8 chr1 189200858 189201211 -7994221 - MTEb LTR MaLR -6 373 6 2 2028 654 250 50 41 chr1 189203326 189203547 -7991885 - ID_B1 SINE B4 -1 223 1 2 2028 184 215 9 117 chr1 189203553 189203639 -7991793 + L2b LINE L2 3310 3387 0 2 2028 913 309 16 108 chr1 189203869 189204062 -7991370 + ORR1E LTR MaLR 10 191 -168 2 2028 1058 43 56 21 chr1 189204062 189204205 -7991227 + B1_Mus1 SINE Alu 1 148 0 2 2028 913 309 16 108 chr1 189204205 189204392 -7991040 + ORR1E LTR MaLR 192 355 -4 2 2028 610 333 84 64 chr1 189204408 189204520 -7990912 - ORR1E LTR MaLR -9 350 241 2 2028 1124 208 205 124 chr1 189204520 189204973 -7990459 + MT2A LTR ERVL 1 489 -44 2 2028 495 128 0 0 chr1 189204973 189205059 -7990373 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 2 2028 1124 208 205 124 chr1 189205059 189205098 -7990334 + MT2A LTR ERVL 490 533 0 2 2028 610 333 84 64 chr1 189205098 189205328 -7990104 - ORR1E LTR MaLR -119 240 1 2 2028 233 299 11 44 chr1 189205765 189205856 -7989576 - MTEb LTR MaLR -14 365 278 2 2028 730 158 9 37 chr1 189206557 189206891 -7988541 + G-rich Low_complexity Low_complexity 1 324 0 2 2028 630 39 0 0 chr1 189207343 189207420 -7988012 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 2028 299 221 15 0 chr1 189207523 189207591 -7987841 - L1MB8 LINE L1 -123 6055 5987 2 2028 208 330 9 55 chr1 189207620 189207729 -7987703 - L2 LINE L2 -985 2434 2331 2 2028 180 77 0 0 chr1 189208038 189208064 -7987368 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 2028 216 200 0 0 chr1 189208065 189208110 -7987322 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 2028 706 324 73 26 chr1 189208177 189208561 -7986871 - MT2A LTR ERVL -119 414 13 2 2028 1003 262 34 37 chr1 189208782 189209079 -7986353 - RMER15 LTR ERVL -3 572 277 2 2028 375 157 253 45 chr1 189209420 189209574 -7985858 + B2_Mm2 SINE B2 2 187 -8 2 2028 269 242 0 0 chr1 189209838 189209900 -7985532 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 2028 865 189 58 29 chr1 189209900 189210074 -7985358 - B3A SINE B2 -16 182 4 2 2028 499 130 0 0 chr1 189210809 189210886 -7984546 + B1_Mus2 SINE Alu 70 146 -1 2 2028 359 41 20 0 chr1 189210886 189210935 -7984497 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 2028 550 62 71 0 chr1 189211094 189211207 -7984225 + (TC)n Simple_repeat Simple_repeat 2 122 0 2 2028 479 250 58 8 chr1 189211433 189211554 -7983878 + RSINE1 SINE B4 5 131 -34 2 2028 281 26 0 26 chr1 189211581 189211620 -7983812 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 2028 1588 220 108 55 chr1 189212367 189212804 -7982628 + RMER2 LTR ERV1 100 559 -8 2 2028 884 69 44 0 chr1 189212840 189212999 -7982433 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 2 2028 405 246 102 8 chr1 189213402 189213529 -7981903 - B1F1 SINE Alu -8 141 3 2 2028 624 320 58 6 chr1 189215462 189215635 -7979797 + B3A SINE B2 1 182 -16 2 2028 195 42 0 0 chr1 189216168 189216192 -7979240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 2028 511 26 79 0 chr1 189216206 189216282 -7979150 - L1Md_F2 LINE L1 -1 6581 6500 2 2028 292 225 15 44 chr1 189216355 189216490 -7978942 + (TTTAA)n Simple_repeat Simple_repeat 1 131 0 2 2028 10444 16 4 0 chr1 189216615 189218497 -7976935 + L1Md_Gf LINE L1 1 1142 -5380 2 2028 13272 22 0 0 chr1 189221332 189222847 -7972585 + L1Md_T LINE L1 4072 5586 -297 2 2028 9166 5 0 0 chr1 189222847 189223843 -7971589 + L1Md_T LINE L1 5587 6582 0 2 2028 543 246 53 48 chr1 189224207 189224395 -7971037 + B3A SINE B2 3 191 -7 2 2028 1137 64 35 0 chr1 189224501 189224674 -7970758 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 2028 311 44 22 0 chr1 189224674 189224719 -7970713 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 3 2028 396 262 69 106 chr1 189225710 189225898 -7969534 + B3A SINE B2 2 182 -34 3 2028 1423 56 62 0 chr1 189226356 189226535 -7968897 - B2_Mm2 SINE B2 -4 191 2 3 2028 375 245 32 11 chr1 189226641 189226736 -7968696 - B4A SINE B4 -150 142 46 3 2028 862 108 11 11 chr1 189227572 189227749 -7967683 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 3 2028 258 250 10 137 chr1 189227766 189227868 -7967564 - RSINE1 SINE B4 0 165 77 3 2028 328 329 63 48 chr1 189229189 189229441 -7965991 - MARNA DNA Mariner -282 304 49 3 2028 276 270 0 110 chr1 189229582 189229682 -7965750 + PB1D10 SINE Alu 9 97 -20 3 2028 261 98 0 0 chr1 189229683 189229724 -7965708 + (CAAT)n Simple_repeat Simple_repeat 3 43 0 3 2028 444 265 57 67 chr1 189229930 189230124 -7965308 - MER115 DNA Tip100 -17 676 485 3 2028 1032 233 22 155 chr1 189230221 189230633 -7964799 - ORR1E LTR MaLR 0 359 3 3 2028 855 205 77 14 chr1 189231003 189231211 -7964221 + ID_B1 SINE B4 2 222 -2 3 2028 1413 142 0 34 chr1 189231686 189231920 -7963512 - URR1A DNA MER1_type 0 226 1 3 2028 201 272 36 24 chr1 189232226 189232309 -7963123 + L2a LINE L2 3322 3405 -21 3 2028 419 273 113 49 chr1 189232333 189232518 -7962914 + B3A SINE B2 2 198 0 3 2028 1189 36 0 0 chr1 189233538 189233677 -7961755 + B1_Mm SINE Alu 1 139 -8 3 2028 984 251 27 27 chr1 189234018 189234354 -7961078 - Lx7 LINE L1 -1778 5918 5592 3 2028 411 376 68 0 chr1 189234354 189234748 -7960684 + L1M2 LINE L1 2174 2594 -4255 3 2028 2024 114 3 34 chr1 189234765 189235093 -7960339 - ORR1A3 LTR MaLR -8 318 1 3 2028 1025 314 104 27 chr1 189235304 189236071 -7959361 + L1M2 LINE L1 2851 3676 -3169 3 2028 1467 289 120 68 chr1 189236090 189237414 -7958018 + L1M2 LINE L1 3930 5341 -1504 3 2028 603 233 96 57 chr1 189237444 189237726 -7957706 + L1M2 LINE L1 5690 5982 -863 3 2028 735 236 19 52 chr1 189239090 189239300 -7956132 + B3 SINE B2 1 203 -13 3 2028 330 167 0 0 chr1 189239302 189239362 -7956070 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 2028 2049 125 21 18 chr1 189239545 189239871 -7955561 - ORR1A4 LTR MaLR 0 329 3 3 2028 686 276 56 3 chr1 189239937 189240137 -7955295 - B3 SINE B2 -8 208 1 3 2028 629 259 114 0 chr1 189240192 189240385 -7955047 - B3 SINE B2 0 216 2 3 2028 362 302 6 30 chr1 189240675 189240842 -7954590 + CT-rich Low_complexity Low_complexity 2 164 0 3 2028 269 301 14 0 chr1 189240845 189240918 -7954514 - ID4 SINE ID -9 74 1 3 2028 225 308 99 33 chr1 189241026 189241147 -7954285 - Tigger13a DNA MER2_type -206 565 437 3 2028 314 267 110 32 chr1 189241307 189241462 -7953970 - Tigger13a DNA MER2_type -559 212 46 3 2028 313 228 11 55 chr1 189241670 189241783 -7953649 + L1M5 LINE L1 5377 5484 -696 3 2028 899 270 108 20 chr1 189241981 189242333 -7953099 + MTD LTR MaLR 18 400 -19 3 2028 22 0 0 0 chr1 189243202 189243224 -7952208 + AT_rich Low_complexity Low_complexity 1 22 0 3 2028 263 160 266 0 chr1 189243302 189243396 -7952036 - Lx9 LINE L1 0 7644 7526 3 2028 766 20 39 0 chr1 189243397 189243499 -7951933 + (TTCTC)n Simple_repeat Simple_repeat 5 110 0 3 2028 365 204 301 7 chr1 189243501 189243654 -7951778 - Lx9 LINE L1 -185 7459 7262 3 2028 741 286 71 11 chr1 189243731 189244000 -7951432 + B4A SINE B4 8 292 0 3 2028 279 0 0 0 chr1 189244046 189244077 -7951355 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 2028 270 0 0 0 chr1 189244077 189244106 -7951326 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 2028 692 287 101 21 chr1 189244249 189244626 -7950806 + MamRep434 DNA TcMar 2 408 -18 3 2028 497 307 7 0 chr1 189245527 189245667 -7949765 - ID_B1 SINE B4 -80 144 4 3 2028 476 318 153 20 chr1 189245721 189246125 -7949307 - MLT1F2 LTR MaLR -98 462 5 3 2028 1219 134 118 5 chr1 189246334 189246537 -7948895 - URR1A DNA MER1_type 0 226 1 3 2028 25 0 0 0 chr1 189246834 189246859 -7948573 + AT_rich Low_complexity Low_complexity 1 25 0 3 2028 240 35 0 0 chr1 189247478 189247507 -7947925 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 3 2028 1254 48 0 0 chr1 189247551 189247698 -7947734 + B1_Mm SINE Alu 1 147 0 3 2028 303 96 27 27 chr1 189247702 189247777 -7947655 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 3 2028 1779 71 0 34 chr1 189247795 189248058 -7947374 - L1Md_F2 LINE L1 0 6582 6329 3 2028 2398 47 0 2 chr1 189248058 189248376 -7947056 + L1Md_F2 LINE L1 5733 6045 -539 3 2028 978 210 182 18 chr1 189249632 189249918 -7945514 - MTD LTR MaLR -86 333 1 3 2028 229 0 54 27 chr1 189249934 189249971 -7945461 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 2028 3397 45 2 0 chr1 189250070 189250469 -7944963 - MTB LTR MaLR 0 400 1 3 2028 324 252 40 16 chr1 189250797 189250922 -7944510 + MER95 LTR ERV 304 431 0 3 2028 398 216 0 30 chr1 189251404 189251504 -7943928 + MIR3 SINE MIR 105 201 -7 3 2028 1088 128 34 28 chr1 189251692 189251869 -7943563 + B2_Mm2 SINE B2 3 180 -15 3 2028 219 125 0 0 chr1 189253521 189253561 -7941871 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 2028 513 141 0 0 chr1 189253708 189253793 -7941639 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 2028 362 317 53 60 chr1 189253873 189254024 -7941408 - B4A SINE B4 -141 151 2 3 2028 1363 100 10 10 chr1 189254418 189254610 -7940822 + B2_Mm2 SINE B2 2 193 -2 3 2028 446 246 26 9 chr1 189255476 189255591 -7939841 + RSINE1 SINE B4 2 118 -47 3 2028 308 43 0 21 chr1 189255594 189255641 -7939791 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 3 2028 277 333 75 8 chr1 189256464 189256597 -7938835 - ORR1E LTR MaLR -217 142 1 3 2028 378 0 0 0 chr1 189256761 189256803 -7938629 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 2028 277 214 0 0 chr1 189256822 189256878 -7938554 - RSINE1 SINE B4 -23 142 87 3 2028 256 233 185 22 chr1 189257123 189257134 -7938298 + MT2B2 LTR ERVL 152 177 -407 3 2028 379 193 273 0 chr1 189257134 189257222 -7938210 + B1_Mur2 SINE Alu 1 112 -37 3 2028 245 29 0 29 chr1 189259552 189259587 -7935845 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 2028 713 118 12 100 chr1 189259996 189260156 -7935276 - URR1B DNA MER1_type -1 224 79 3 2028 221 159 0 0 chr1 189260156 189260200 -7935232 + T-rich Low_complexity Low_complexity 1 44 0 3 2028 306 279 0 0 chr1 189260200 189260261 -7935171 - URR1B DNA MER1_type -143 82 22 3 2028 223 319 14 0 chr1 189260709 189260778 -7934654 - MIRb SINE MIR -168 100 31 3 2028 265 267 107 47 chr1 189260879 189261048 -7934384 - MIRb SINE MIR -66 202 24 3 2028 383 270 0 50 chr1 189261125 189261246 -7934186 + PB1D10 SINE Alu 1 115 -2 3 2028 5686 168 20 42 chr1 189261603 189262684 -7932748 + Lx5 LINE L1 5982 7039 -11 3 2028 28 0 0 0 chr1 189262946 189262974 -7932458 + AT_rich Low_complexity Low_complexity 1 28 0 3 2028 414 0 0 0 chr1 189263030 189263076 -7932356 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 2028 282 221 15 0 chr1 189264148 189264216 -7931216 - PB1D10 SINE Alu 0 117 49 3 2028 1060 293 37 54 chr1 189264789 189265218 -7930214 + Lx8 LINE L1 6375 6796 -677 3 2028 783 281 26 23 chr1 189265347 189265613 -7929819 + Lx8 LINE L1 6756 7022 -451 3 2028 203 290 0 10 chr1 189266416 189266517 -7928915 + (TATATG)n Simple_repeat Simple_repeat 4 103 0 3 2028 567 192 36 51 chr1 189267246 189267383 -7928049 + B4 SINE B4 2 136 -156 3 2028 304 235 12 12 chr1 189267691 189267777 -7927655 + (ATG)n Simple_repeat Simple_repeat 3 88 0 3 2029 678 307 50 64 chr1 189268169 189268451 -7926981 - B4 SINE B4 -12 280 3 3 2029 423 56 0 0 chr1 189269705 189269759 -7925673 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 3 2029 508 263 48 48 chr1 189272434 189272642 -7922790 + L1MB3 LINE L1 5974 6181 -2 3 2029 552 338 28 18 chr1 189272945 189273228 -7922204 - B4A SINE B4 -5 287 2 3 2029 438 216 29 10 chr1 189274183 189274286 -7921146 - PB1D10 SINE Alu -1 116 12 3 2029 297 254 0 27 chr1 189275166 189275239 -7920193 + RSINE1 SINE B4 48 118 -47 3 2029 717 190 7 7 chr1 189275331 189275469 -7919963 + B1F SINE Alu 2 139 -10 3 2029 1203 250 39 18 chr1 189276044 189276382 -7919050 - MTEa LTR MaLR -34 345 1 3 2029 230 329 0 14 chr1 189277202 189277276 -7918156 + MTEb LTR MaLR 283 355 -24 3 2029 535 306 81 27 chr1 189277467 189277726 -7917706 - B4A SINE B4 -17 275 3 3 2029 639 239 99 134 chr1 189277891 189277953 -7917479 + ID SINE ID 1 61 -163 3 2029 1076 102 0 7 chr1 189277953 189278101 -7917331 + B1_Mus2 SINE Alu 1 147 0 3 2029 639 239 99 134 chr1 189278101 189278270 -7917162 + ID_B1 SINE B4 62 224 0 3 2029 640 256 51 30 chr1 189278420 189278617 -7916815 - B3 SINE B2 -13 203 3 3 2029 578 287 48 37 chr1 189279828 189280099 -7915333 + B4A SINE B4 1 274 -18 3 2029 324 0 0 0 chr1 189280161 189280197 -7915235 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 2029 303 71 0 0 chr1 189280197 189280239 -7915193 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 2029 644 223 73 151 chr1 189281517 189281749 -7913683 + B3 SINE B2 3 216 0 3 2029 687 285 32 14 chr1 189281850 189282067 -7913365 + ID_B1 SINE B4 1 221 -3 3 2029 399 89 0 0 chr1 189282635 189282691 -7912741 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 2029 180 152 0 0 chr1 189282807 189282840 -7912592 + T-rich Low_complexity Low_complexity 1 33 0 3 2029 899 251 72 0 chr1 189283139 189283390 -7912042 + MTE2b LTR MaLR 74 342 -37 3 2029 184 309 43 14 chr1 189284429 189284498 -7910934 - MIR3 SINE MIR -3 205 135 3 2029 26 0 0 0 chr1 189285665 189285691 -7909741 + AT_rich Low_complexity Low_complexity 1 26 0 3 2029 23 0 0 0 chr1 189286289 189286312 -7909120 + AT_rich Low_complexity Low_complexity 1 23 0 3 2029 423 98 0 0 chr1 189286482 189286543 -7908889 + (GGAGAA)n Simple_repeat Simple_repeat 3 63 0 4 2029 180 176 0 0 chr1 189286964 189286998 -7908434 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 2029 967 101 0 35 chr1 189287332 189287476 -7907956 - B1_Mus1 SINE Alu -5 143 5 4 2029 279 306 62 39 chr1 189287656 189287785 -7907647 + RSINE1 SINE B4 1 132 -33 4 2029 444 37 0 0 chr1 189287803 189287857 -7907575 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 4 2029 567 263 54 104 chr1 189287891 189288150 -7907282 + ORR1E LTR MaLR 50 295 -64 4 2029 727 207 158 0 chr1 189288796 189288960 -7906472 + ID_B1 SINE B4 35 224 0 4 2029 2225 213 77 39 chr1 189289132 189289709 -7905723 - RMER1C Other Other -1 1341 228 4 2029 924 295 114 67 chr1 189289997 189290731 -7904701 - L1MC LINE L1 -880 5266 4505 4 2029 399 41 0 0 chr1 189290731 189290780 -7904652 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 2029 924 295 114 67 chr1 189290780 189290849 -7904583 - L1MC LINE L1 -1642 4504 4426 4 2029 850 185 60 55 chr1 189291361 189291561 -7903871 + B3 SINE B2 2 202 -14 4 2029 198 0 0 0 chr1 189291563 189291585 -7903847 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 2029 652 280 25 35 chr1 189291683 189291864 -7903568 + B3A SINE B2 1 183 -15 4 2029 297 0 0 0 chr1 189291864 189291897 -7903535 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 2029 315 0 0 0 chr1 189291897 189291931 -7903501 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 2029 652 280 25 35 chr1 189291931 189291948 -7903484 + B3A SINE B2 184 197 -1 4 2029 265 296 87 16 chr1 189292187 189292314 -7903118 - L1M5 LINE L1 -330 5794 5659 4 2029 279 0 0 0 chr1 189293094 189293125 -7902307 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 2029 1175 48 0 27 chr1 189293125 189293267 -7902165 - B1_Mm SINE Alu -7 140 3 4 2029 975 270 63 34 chr1 189293679 189293798 -7901634 + L1MB7 LINE L1 5434 5561 -623 4 2029 1189 277 10 51 chr1 189293798 189294193 -7901239 + MTE2a LTR MaLR 1 379 0 4 2029 975 270 63 34 chr1 189294193 189294456 -7900976 + L1MB7 LINE L1 5562 5827 -357 4 2029 355 281 11 0 chr1 189294465 189294554 -7900878 + RSINE1 SINE B4 3 92 -73 4 2029 1435 190 129 52 chr1 189294565 189295052 -7900380 + RMER4B LTR ERVK 17 466 0 4 2029 378 0 0 0 chr1 189295110 189295152 -7900280 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 2029 345 174 0 0 chr1 189295519 189295588 -7899844 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 2029 21 36 0 0 chr1 189295991 189296019 -7899413 + AT_rich Low_complexity Low_complexity 1 28 0 4 2029 405 299 0 25 chr1 189296061 189296181 -7899251 + ID_B1 SINE B4 82 198 -26 4 2029 597 211 0 0 chr1 189296079 189296188 -7899244 + B1_Mur1 SINE Alu 19 127 -22 4 2029 1200 54 0 0 chr1 189296236 189296383 -7899049 + B1_Mus2 SINE Alu 1 147 0 4 2029 659 181 7 0 chr1 189296710 189296865 -7898567 + GA-rich Low_complexity Low_complexity 4 159 0 4 2029 2955 190 56 8 chr1 189296870 189297458 -7897974 - RLTR18 LTR ERVK 0 616 1 4 2029 227 244 0 0 chr1 189297479 189297524 -7897908 + GA-rich Low_complexity Low_complexity 1 45 0 4 2029 3118 228 36 61 chr1 189297558 189298409 -7897023 + RMER1C Other Other 511 1340 -2 4 2029 206 291 23 11 chr1 189298684 189298771 -7896661 + CT-rich Low_complexity Low_complexity 1 88 0 4 2029 369 0 0 0 chr1 189298792 189298833 -7896599 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 2029 379 335 72 8 chr1 189299747 189299982 -7895450 - MLT1C LTR MaLR -1 466 217 4 2029 330 26 0 0 chr1 189300103 189300142 -7895290 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 2029 280 246 15 0 chr1 189301291 189301356 -7894076 - L2c LINE L2 -80 3307 3242 4 2029 1140 74 0 26 chr1 189302772 189302924 -7892508 - B1_Mus1 SINE Alu 0 148 1 4 2029 247 322 11 0 chr1 189303318 189303405 -7892027 + L1MB7 LINE L1 6087 6174 -10 4 2029 274 279 0 0 chr1 189303703 189303771 -7891661 - ID4_ SINE ID -14 69 2 4 2029 2191 219 36 40 chr1 189303841 189304320 -7891112 + RLTR20B3 LTR ERVK 4 483 -94 4 2029 198 0 0 0 chr1 189304320 189304342 -7891090 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 2029 2191 219 36 40 chr1 189304342 189304438 -7890994 + RLTR20B3 LTR ERVK 484 576 -1 4 2029 272 289 105 41 chr1 189304439 189304696 -7890736 - B4A SINE B4 -19 273 2 4 2029 272 316 117 51 chr1 189304870 189305067 -7890365 + MER58C DNA MER1_type 2 211 -4 4 2029 34 42 0 0 chr1 189305805 189305853 -7889579 + AT_rich Low_complexity Low_complexity 1 48 0 4 2029 384 22 0 0 chr1 189306213 189306258 -7889174 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 2029 493 259 91 72 chr1 189307442 189307705 -7887727 - Lx8 LINE L1 -363 7097 6846 4 2029 277 145 156 13 chr1 189307705 189307782 -7887650 - B1_Mur3 SINE Alu -16 133 46 4 2029 404 38 0 0 chr1 189307774 189307827 -7887605 - B2_Mm2 SINE B2 -141 54 2 4 2029 430 301 13 6 chr1 189307829 189307986 -7887446 - Lx7 LINE L1 -855 6841 6684 4 2029 3194 63 2 2 chr1 189308185 189308581 -7886851 - MTA_Mm LTR MaLR 0 396 1 4 2029 428 263 75 44 chr1 189309600 189309759 -7885673 + RSINE1 SINE B4 2 165 0 4 2029 202 139 70 0 chr1 189309764 189309807 -7885625 + (CATA)n Simple_repeat Simple_repeat 2 47 0 4 2029 474 257 0 0 chr1 189309811 189309986 -7885446 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 2029 231 353 59 0 chr1 189310356 189310458 -7884974 + PB1D10 SINE Alu 1 108 -9 4 2029 335 247 47 0 chr1 189311168 189311253 -7884179 - B3A SINE B2 -109 89 1 4 2029 372 223 116 0 chr1 189312573 189312685 -7882747 + PB1 SINE Alu 3 127 0 4 2029 423 0 0 0 chr1 189312750 189312797 -7882635 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 2029 265 298 69 17 chr1 189313002 189313118 -7882314 + MIR3 SINE MIR 67 188 -20 4 2029 716 295 65 17 chr1 189314263 189314494 -7880938 + B4A SINE B4 1 242 -50 4 2029 897 251 134 35 chr1 189314601 189314943 -7880489 - MTD LTR MaLR -14 405 30 4 2029 1047 214 157 12 chr1 189315680 189315935 -7879497 + B4 SINE B4 1 292 0 4 2029 295 327 58 0 chr1 189316057 189316161 -7879271 - PB1D10 SINE Alu -1 116 7 4 2029 417 198 103 10 chr1 189316945 189317042 -7878390 + PB1D9 SINE Alu 9 114 -6 4 2029 355 244 0 13 chr1 189317176 189317294 -7878138 + L1VL2 LINE L1 179 276 -6142 4 2029 322 249 214 42 chr1 189317286 189317454 -7877978 + L1_Mus2 LINE L1 129 264 -6352 4 2029 974 130 8 11 chr1 189317456 189317693 -7877739 + L1Md_F LINE L1 952 1121 -5439 4 2029 31693 114 16 20 chr1 189317700 189321833 -7873599 + L1_Mus2 LINE L1 510 4646 -1237 4 2029 6398 38 0 0 chr1 189321833 189322576 -7872856 + L1Md_T LINE L1 5839 6581 -1 4 2029 31693 107 9 6 chr1 189322576 189323210 -7872222 + L1_Mus2 LINE L1 4647 5293 -590 4 2029 1187 56 0 0 chr1 189323210 189323353 -7872079 + B1_Mus1 SINE Alu 1 143 -5 4 2029 31693 70 17 4 chr1 189323353 189324610 -7870822 + L1_Mus2 LINE L1 5294 6566 0 4 2029 1112 39 0 0 chr1 189326480 189326607 -7868825 - L1Md_F2 LINE L1 -194 6388 6262 4 2029 1649 35 0 0 chr1 189326607 189326806 -7868626 + L1Md_A LINE L1 6384 6582 0 4 2029 520 205 35 18 chr1 189328102 189328216 -7867216 + MTE2b LTR MaLR 7 122 -237 4 2029 403 221 115 54 chr1 189328222 189328308 -7867124 - RLTR20D LTR ERVK -6 572 492 4 2029 480 35 0 0 chr1 189328308 189328366 -7867066 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 2029 403 221 115 54 chr1 189328366 189328427 -7867005 - RLTR20D LTR ERVK -87 491 416 4 2029 897 224 65 85 chr1 189328407 189328700 -7866732 - RLTR20D LTR ERVK -281 287 1 4 2029 799 206 63 15 chr1 189328700 189328918 -7866514 + MTE2b LTR MaLR 120 375 -4 4 2029 221 288 0 27 chr1 189329095 189329170 -7866262 + (CATA)n Simple_repeat Simple_repeat 2 74 0 4 2029 249 57 0 0 chr1 189330664 189330699 -7864733 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 2029 225 286 142 112 chr1 189331252 189331457 -7863975 - B4A SINE B4 -77 215 5 4 2029 342 0 0 0 chr1 189331687 189331725 -7863707 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 2029 23 54 0 0 chr1 189331735 189331772 -7863660 + AT_rich Low_complexity Low_complexity 1 37 0 4 2029 657 38 0 0 chr1 189332203 189332283 -7863149 + (TCCC)n Simple_repeat Simple_repeat 4 83 0 4 2029 284 164 33 0 chr1 189332312 189332373 -7863059 + CT-rich Low_complexity Low_complexity 2 64 0 4 2029 487 319 25 25 chr1 189332515 189332676 -7862756 - B4A SINE B4 -123 169 9 4 2029 3984 108 5 9 chr1 189333242 189333811 -7861621 + RMER2 LTR ERV1 1 567 0 4 2029 695 316 79 34 chr1 189333985 189334250 -7861182 + B4 SINE B4 12 288 -4 4 2029 1156 241 89 20 chr1 189335321 189335668 -7859764 - MTD LTR MaLR 0 419 49 4 2029 254 346 56 0 chr1 189335785 189335892 -7859540 + PB1D10 SINE Alu 1 113 -4 4 2029 288 0 0 0 chr1 189336313 189336345 -7859087 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 2029 261 244 0 58 chr1 189336526 189336613 -7858819 + GA-rich Low_complexity Low_complexity 5 86 0 4 2029 225 197 0 129 chr1 189336767 189336837 -7858595 - MTEa LTR MaLR -5 374 314 4 2029 864 191 13 3 chr1 189336839 189337155 -7858277 + GA-rich Low_complexity Low_complexity 1 319 0 4 2029 1162 238 48 13 chr1 189337161 189337472 -7857960 - MTEa LTR MaLR -54 325 4 4 2029 378 233 0 43 chr1 189338683 189338777 -7856655 - ID_B1 SINE B4 0 224 135 4 2029 1094 269 70 44 chr1 189339758 189340144 -7855288 + MTD LTR MaLR 21 401 -18 4 2029 423 0 0 0 chr1 189340381 189340428 -7855004 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 2029 7954 89 10 1 chr1 189342345 189343702 -7851730 - L1_Mus3 LINE L1 -6 6632 5262 4 2029 606 257 7 0 chr1 189343766 189344209 -7851223 + (TG)n Simple_repeat Simple_repeat 1 446 0 4 2029 575 284 198 9 chr1 189344211 189344438 -7850994 - B4A SINE B4 -2 290 21 4 2029 392 295 23 8 chr1 189345563 189345696 -7849736 - MLT1B LTR MaLR -15 375 241 4 2029 244 295 88 58 chr1 189345859 189345996 -7849436 - MLT1B LTR MaLR -249 141 1 4 2029 25647 156 46 16 chr1 189346799 189347937 -7847495 + Lx5 LINE L1 889 2051 -3826 4 2029 200 86 29 0 chr1 189347937 189347972 -7847460 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 2029 25647 148 39 16 chr1 189347972 189349004 -7846428 + Lx5 LINE L1 2052 3151 -2726 4 2029 423 0 0 0 chr1 189349004 189349051 -7846381 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 2029 25647 154 40 19 chr1 189349051 189352892 -7842540 + Lx5 LINE L1 3152 7048 -2 4 2029 550 278 69 51 chr1 189353013 189353442 -7841990 - RLTR11B LTR ERVK -24 504 3 5 2029 941 103 20 40 chr1 189353518 189353669 -7841763 + B1_Mur4 SINE Alu 1 148 -2 5 2029 558 176 11 11 chr1 189354227 189354405 -7841027 + CT-rich Low_complexity Low_complexity 2 179 0 5 2029 195 42 0 0 chr1 189355298 189355322 -7840110 + (CCCCCA)n Simple_repeat Simple_repeat 5 28 0 5 2029 355 278 44 0 chr1 189356126 189356216 -7839216 - RSINE1 SINE B4 -69 96 3 5 2029 462 114 0 0 chr1 189356281 189356351 -7839081 + (CAGA)n Simple_repeat Simple_repeat 3 72 0 5 2029 692 299 141 24 chr1 189356361 189356773 -7838659 - MT2A LTR ERVL -71 462 3 5 2029 905 305 124 28 chr1 189357013 189357586 -7837846 - LTR89 LTR ERVL? -1 878 251 5 2029 231 36 0 0 chr1 189358193 189358221 -7837211 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 2029 565 308 111 129 chr1 189358230 189358625 -7836807 + L1MA5 LINE L1 3727 4143 -2000 5 2029 1461 39 0 0 chr1 189358625 189358805 -7836627 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 2029 565 308 111 129 chr1 189358805 189359358 -7836074 + L1MA5 LINE L1 4144 4658 -1485 5 2029 298 311 66 30 chr1 189359350 189359516 -7835916 + L1MA5 LINE L1 5606 5777 -523 5 2029 319 303 128 29 chr1 189359528 189359870 -7835562 + L1MA5 LINE L1 5858 6232 -68 5 2029 405 0 0 0 chr1 189359870 189359915 -7835517 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 2029 264 122 0 0 chr1 189359915 189359955 -7835477 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 2029 319 303 128 29 chr1 189359955 189359995 -7835437 + L1MA5 LINE L1 6233 6278 -22 5 2029 5642 92 46 7 chr1 189361257 189362083 -7833349 - L1_Mus3 LINE L1 -2 6636 5779 5 2029 2308 29 14 4 chr1 189362119 189362397 -7833035 - L1Md_F3 LINE L1 -1 6583 6303 5 2029 528 287 55 6 chr1 189362397 189362599 -7832833 - B3A SINE B2 -8 208 1 5 2029 585 120 0 0 chr1 189363151 189363243 -7832189 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 2029 3881 59 0 6 chr1 189363976 189364468 -7830964 + L1Md_F2 LINE L1 6092 6580 -2 5 2029 529 345 130 20 chr1 189364600 189364991 -7830441 - MLT1F LTR MaLR -15 533 100 5 2029 735 217 10 122 chr1 189365009 189365214 -7830218 + B3A SINE B2 1 182 -16 5 2029 198 0 0 0 chr1 189365214 189365236 -7830196 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 2029 342 0 0 0 chr1 189365235 189365273 -7830159 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 2029 378 0 0 0 chr1 189365275 189365317 -7830115 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 2029 441 170 0 0 chr1 189365316 189365428 -7830004 + GA-rich Low_complexity Low_complexity 2 113 0 5 2029 276 30 0 0 chr1 189365428 189365461 -7829971 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 5 2029 446 320 26 0 chr1 189365486 189365639 -7829793 + ID_B1 SINE B4 1 157 -67 5 2029 355 316 119 49 chr1 189365754 189365997 -7829435 + B4A SINE B4 33 292 0 5 2029 203 0 37 0 chr1 189366221 189366248 -7829184 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 2029 771 244 53 10 chr1 189367926 189368133 -7827299 + B3 SINE B2 1 216 0 5 2029 375 232 25 59 chr1 189368313 189368432 -7827000 + RSINE1 SINE B4 17 131 -34 5 2029 2170 38 0 0 chr1 189368571 189368833 -7826599 - L1_Mm LINE L1 -1662 4221 3960 5 2029 7815 26 15 0 chr1 189368834 189369746 -7825686 + L1Md_F3 LINE L1 5659 6584 0 5 2029 690 139 0 0 chr1 189370895 189371046 -7824386 + (TC)n Simple_repeat Simple_repeat 2 152 0 5 2029 813 21 0 0 chr1 189371047 189371142 -7824290 + (CA)n Simple_repeat Simple_repeat 2 96 0 5 2029 709 308 74 19 chr1 189373147 189373418 -7822014 + B4A SINE B4 5 290 -2 5 2029 22 0 0 0 chr1 189373764 189373786 -7821646 + AT_rich Low_complexity Low_complexity 1 22 0 5 2029 231 36 0 0 chr1 189373935 189373963 -7821469 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 2029 744 214 17 93 chr1 189374493 189374623 -7820809 - Lx9 LINE L1 -1 7643 7511 5 2029 1461 197 56 114 chr1 189374623 189375018 -7820414 + ORR1D1 LTR MaLR 1 372 -2 5 2029 744 214 17 93 chr1 189375018 189375176 -7820256 - Lx9 LINE L1 -134 7510 7377 5 2029 240 86 0 0 chr1 189375189 189375224 -7820208 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 2029 493 228 48 8 chr1 189376728 189376852 -7818580 + RSINE1 SINE B4 3 131 -34 5 2029 931 213 58 0 chr1 189376888 189377076 -7818356 + B3 SINE B2 5 203 -13 5 2029 457 192 15 0 chr1 189377088 189377218 -7818214 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 2029 213 121 0 0 chr1 189377255 189377288 -7818144 + (A)n Simple_repeat Simple_repeat 1 33 0 5 2029 48 67 0 0 chr1 189377660 189377750 -7817682 + AT_rich Low_complexity Low_complexity 1 90 0 5 2029 487 211 195 0 chr1 189377823 189377946 -7817486 + B1_Mus2 SINE Alu 1 147 0 5 2029 1071 92 0 0 chr1 189377954 189378107 -7817325 + (GGA)n Simple_repeat Simple_repeat 1 153 0 5 2029 1027 100 130 6 chr1 189378260 189378421 -7817011 + B2_Mm2 SINE B2 1 181 -14 5 2029 465 19 0 0 chr1 189380016 189380070 -7815362 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 2029 698 62 10 0 chr1 189380091 189380187 -7815245 + (TCTCC)n Simple_repeat Simple_repeat 4 100 0 5 2029 599 254 48 90 chr1 189382003 189382285 -7813147 - ORR1E LTR MaLR 0 370 58 5 2029 408 71 0 0 chr1 189382415 189382471 -7812961 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 2029 322 180 32 16 chr1 189382532 189382594 -7812838 + Lx7 LINE L1 6626 6688 -1008 5 2029 1873 244 56 7 chr1 189383074 189383524 -7811908 + Lx7 LINE L1 6600 7071 -625 5 2029 294 342 20 20 chr1 189383549 189383698 -7811734 + MLT1E1A LTR MaLR 1 149 -531 5 2029 455 220 141 7 chr1 189383809 189383928 -7811504 - MTE2b LTR MaLR -55 324 186 5 2029 429 20 0 0 chr1 189383928 189383978 -7811454 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 2029 443 229 138 7 chr1 189383978 189384016 -7811416 - MTE2b LTR MaLR -194 185 148 5 2029 385 303 63 76 chr1 189384399 189384526 -7810906 + L1ME1 LINE L1 5328 5434 -730 5 2029 1470 241 83 0 chr1 189384526 189384874 -7810558 - MTE2b LTR MaLR -2 377 1 5 2029 385 298 72 18 chr1 189384874 189385071 -7810361 + L1ME1 LINE L1 5435 5643 -536 5 2029 180 111 0 0 chr1 189385071 189385098 -7810334 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 5 2029 526 298 78 50 chr1 189385107 189385464 -7809968 + L1ME1 LINE L1 5611 5977 -202 5 2029 312 269 80 44 chr1 189385536 189385649 -7809783 - PB1D10 SINE Alu 0 117 1 5 2029 699 263 57 99 chr1 189386026 189386380 -7809052 + ORR1E LTR MaLR 19 357 -2 5 2029 24 0 0 0 chr1 189386505 189386529 -7808903 + AT_rich Low_complexity Low_complexity 1 24 0 5 2029 729 294 84 15 chr1 189386763 189387036 -7808396 + B4A SINE B4 1 292 0 5 2029 211 226 16 16 chr1 189387037 189387100 -7808332 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 2029 666 242 39 0 chr1 189387413 189387566 -7807866 - RSINE1 SINE B4 -6 159 1 5 2029 786 119 16 33 chr1 189388276 189388458 -7806974 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 2029 354 98 0 0 chr1 189388461 189388512 -7806920 + (TAGG)n Simple_repeat Simple_repeat 1 51 0 5 2029 964 48 34 0 chr1 189388541 189388688 -7806744 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 5 2029 1105 304 123 17 chr1 189388719 189389184 -7806248 - MLT2B1 LTR ERVL -4 516 3 5 2029 759 213 14 0 chr1 189389347 189389488 -7805944 - RSINE1 SINE B4 -21 144 2 5 2029 202 211 0 0 chr1 189390490 189390528 -7804904 + L2a LINE L2 3376 3413 -13 5 2029 580 331 6 24 chr1 189391371 189391535 -7803897 + RSINE1 SINE B4 3 163 -2 5 2029 190 255 71 18 chr1 189392771 189392827 -7802605 - MIRc SINE MIR -195 73 15 5 2029 5270 107 17 1 chr1 189392949 189393699 -7801733 + Lx2 LINE L1 5884 6645 -352 5 2029 1582 95 9 0 chr1 189393693 189393914 -7801518 + Lx2 LINE L1 6769 6991 -6 5 2029 229 340 78 0 chr1 189394424 189394527 -7800905 + ORR1E LTR MaLR 1 111 -248 5 2029 264 294 16 16 chr1 189395803 189395924 -7799508 - Lx9 LINE L1 -8 7636 7516 5 2029 806 234 15 65 chr1 189395919 189396179 -7799253 + Lx9 LINE L1 7270 7516 -128 5 2029 683 163 35 43 chr1 189396401 189396542 -7798890 - B2_Mm2 SINE B2 -55 140 1 5 2029 674 298 147 77 chr1 189396708 189396750 -7798682 - MT2A LTR ERVL 0 533 489 5 2029 270 0 0 0 chr1 189396750 189396780 -7798652 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 2029 674 298 147 77 chr1 189396780 189396999 -7798433 - MT2A LTR ERVL -45 488 244 5 2029 198 103 0 0 chr1 189396999 189397028 -7798404 + (CCA)n Simple_repeat Simple_repeat 1 29 0 5 2029 674 298 147 77 chr1 189397028 189397078 -7798354 - MT2A LTR ERVL -290 243 200 5 2029 262 276 39 13 chr1 189397122 189397199 -7798233 - MTC LTR MaLR -342 79 1 5 2029 233 218 55 0 chr1 189397199 189397245 -7798187 - MLT1A LTR MaLR -314 60 12 5 2029 233 259 77 8 chr1 189397688 189397766 -7797666 - L2a LINE L2 -75 3351 3247 5 2029 415 215 0 0 chr1 189397937 189398030 -7797402 + L1MA9 LINE L1 6049 6141 -171 5 2029 407 311 0 0 chr1 189398030 189398120 -7797312 + 5S rRNA rRNA 1 90 -31 5 2029 270 0 0 0 chr1 189398141 189398171 -7797261 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 2029 257 190 17 17 chr1 189398179 189398238 -7797194 + L1MA9 LINE L1 6248 6306 -6 5 2029 652 308 40 51 chr1 189398278 189398531 -7796901 + B4A SINE B4 31 280 -12 5 2029 189 0 0 0 chr1 189398575 189398596 -7796836 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 2029 270 260 36 63 chr1 189398676 189398787 -7796645 + L1MC1 LINE L1 6208 6315 -18 5 2029 257 104 0 59 chr1 189398808 189398859 -7796573 + GA-rich Low_complexity Low_complexity 1 48 0 5 2030 612 238 40 0 chr1 189399475 189399601 -7795831 + RSINE1 SINE B4 10 140 -25 5 2030 360 323 181 27 chr1 189399836 189400250 -7795182 + L2a LINE L2 2285 2762 -657 5 2030 578 365 68 34 chr1 189400330 189400710 -7794722 - MLT1E1A LTR MaLR -49 631 239 5 2030 317 259 12 12 chr1 189400712 189400794 -7794638 - MLT1E1A LTR MaLR -551 129 48 5 2030 255 292 15 0 chr1 189400959 189401024 -7794408 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 2030 208 348 99 0 chr1 189401398 189401539 -7793893 + L2a LINE L2 2807 2961 -458 5 2030 185 284 71 43 chr1 189401572 189401642 -7793790 + L2a LINE L2 3038 3109 -317 5 2030 27 0 0 0 chr1 189401649 189401676 -7793756 + AT_rich Low_complexity Low_complexity 1 27 0 5 2030 390 230 33 74 chr1 189401676 189401798 -7793634 - MTEa LTR MaLR -51 328 212 5 2030 842 273 148 13 chr1 189401819 189402212 -7793220 + L1MA9 LINE L1 5828 6273 -39 5 2030 245 290 10 29 chr1 189402235 189402338 -7793094 + GA-rich Low_complexity Low_complexity 3 103 0 5 2030 210 191 0 0 chr1 189402338 189402380 -7793052 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 5 2030 522 46 0 0 chr1 189402400 189402465 -7792967 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 6 2030 387 223 9 153 chr1 189402548 189402659 -7792773 - B3 SINE B2 -120 96 2 6 2030 1563 208 24 70 chr1 189402735 189403118 -7792314 + MTD LTR MaLR 53 417 -2 6 2030 212 77 26 0 chr1 189403140 189403179 -7792253 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 2030 219 284 209 76 chr1 189403812 189404022 -7791410 + B4A SINE B4 43 280 -12 6 2030 334 93 18 36 chr1 189404077 189404133 -7791299 + HAL1-3A_ME LINE L1 1974 2028 -830 6 2030 378 85 0 0 chr1 189404133 189404192 -7791240 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 6 2030 512 285 101 0 chr1 189404305 189404512 -7790920 + L1MC4 LINE L1 7244 7471 -571 6 2030 401 54 18 0 chr1 189404913 189404969 -7790463 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 2030 510 61 0 0 chr1 189404992 189405058 -7790374 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 6 2030 612 216 157 1 chr1 189405059 189405257 -7790175 + MTD LTR MaLR 181 419 0 6 2030 936 150 0 0 chr1 189405280 189405440 -7789992 + (TCC)n Simple_repeat Simple_repeat 3 162 0 6 2030 765 244 5 99 chr1 189405444 189405667 -7789765 - ID_B1 SINE B4 -22 202 1 6 2030 271 312 30 45 chr1 189406044 189406178 -7789254 + LTR33 LTR ERVL 47 178 -337 6 2030 322 182 148 0 chr1 189406602 189406690 -7788742 + MIRb SINE MIR 86 186 -82 6 2030 419 291 62 55 chr1 189407482 189407920 -7787512 + RLTR12B LTR ERVK 14 333 -26 6 2030 462 79 0 0 chr1 189408041 189408104 -7787328 + (TCCTG)n Simple_repeat Simple_repeat 5 67 0 6 2030 3694 146 48 89 chr1 189408879 189408932 -7786500 + RMER6A LTR ERVK 1 54 -702 6 2030 252 0 0 0 chr1 189408932 189408960 -7786472 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 2030 3694 146 48 89 chr1 189408960 189409694 -7785738 + RMER6A LTR ERVK 55 755 -1 6 2030 290 220 102 74 chr1 189410885 189410993 -7784439 + RSINE1 SINE B4 34 144 -21 6 2030 306 0 0 0 chr1 189411003 189411037 -7784395 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 2030 288 0 0 0 chr1 189411560 189411592 -7783840 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 2030 742 274 40 81 chr1 189411666 189411987 -7783445 - MLT1B LTR MaLR -12 378 71 6 2030 23 33 0 0 chr1 189412039 189412069 -7783363 + AT_rich Low_complexity Low_complexity 1 30 0 6 2030 262 294 31 6 chr1 189412219 189412380 -7783052 + (TA)n Simple_repeat Simple_repeat 1 165 0 6 2030 535 196 47 6 chr1 189412560 189412729 -7782703 + C-rich Low_complexity Low_complexity 1 176 0 6 2030 326 156 0 15 chr1 189413163 189413228 -7782204 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 2030 291 340 21 0 chr1 189414058 189414152 -7781280 - PB1D10 SINE Alu 0 117 22 6 2030 606 298 40 44 chr1 189414244 189414518 -7780914 + B4A SINE B4 4 276 -16 6 2030 1314 57 3 0 chr1 189414914 189415300 -7780132 + (TCC)n Simple_repeat Simple_repeat 1 387 0 6 2030 279 275 29 14 chr1 189415304 189415374 -7780058 - ID4 SINE ID -11 72 2 6 2030 401 319 94 71 chr1 189415769 189416499 -7778933 + L1MD LINE L1 4341 5087 -1059 6 2030 282 29 0 0 chr1 189416563 189416598 -7778834 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 2030 279 0 0 0 chr1 189416598 189416628 -7778804 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 2030 584 192 8 0 chr1 189416644 189416900 -7778532 + (TG)n Simple_repeat Simple_repeat 1 258 0 6 2030 539 235 66 29 chr1 189417121 189417257 -7778175 + B1_Mur1 SINE Alu 1 141 -8 6 2030 286 304 44 18 chr1 189417617 189417731 -7777701 + PB1D10 SINE Alu 1 117 0 6 2030 478 241 54 27 chr1 189418101 189418250 -7777182 + MIRc SINE MIR 111 263 -5 6 2030 426 309 139 8 chr1 189418805 189419063 -7776369 - B4 SINE B4 0 292 1 6 2030 512 77 0 13 chr1 189419620 189419699 -7775733 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 2030 454 128 31 26 chr1 189419998 189420192 -7775240 + (TG)n Simple_repeat Simple_repeat 1 195 0 6 2030 520 294 25 56 chr1 189420204 189420236 -7775196 - RSINE1 SINE B4 -1 164 129 6 2030 491 0 17 0 chr1 189420236 189420295 -7775137 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 2030 520 294 25 56 chr1 189420295 189420424 -7775008 - RSINE1 SINE B4 -37 128 8 6 2030 321 324 0 9 chr1 189420543 189420655 -7774777 - PB1D10 SINE Alu -6 111 1 6 2030 1207 107 62 36 chr1 189420810 189421004 -7774428 - ORR1C1 LTR MaLR 0 378 180 6 2030 278 312 26 13 chr1 189421040 189421118 -7774314 - ID4 SINE ID -1 82 4 6 2030 216 0 0 0 chr1 189421389 189421413 -7774019 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 2030 942 285 119 17 chr1 189421421 189421960 -7773472 - L1MCa LINE L1 -4995 1513 920 6 2030 221 342 39 13 chr1 189421995 189422072 -7773360 + ID4 SINE ID 1 79 -4 6 2030 293 300 205 72 chr1 189422099 189422684 -7772748 - L1MCa LINE L1 -5604 904 242 6 2030 366 300 86 79 chr1 189422720 189422999 -7772433 + B4 SINE B4 1 281 -11 6 2030 396 0 0 0 chr1 189423020 189423064 -7772368 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 2030 386 38 0 19 chr1 189423072 189423125 -7772307 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 2030 595 67 22 0 chr1 189423129 189423218 -7772214 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 2030 25 0 0 0 chr1 189423981 189424006 -7771426 + AT_rich Low_complexity Low_complexity 1 25 0 6 2030 402 284 117 28 chr1 189424106 189424251 -7771181 - B4A SINE B4 0 292 135 6 2030 301 198 27 27 chr1 189424327 189424548 -7770884 + (TA)n Simple_repeat Simple_repeat 1 221 0 6 2030 1184 225 19 95 chr1 189424550 189424637 -7770795 - ORR1E LTR MaLR -67 292 217 6 2030 240 59 0 0 chr1 189424637 189424671 -7770761 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 2030 1148 51 7 0 chr1 189424675 189424813 -7770619 - B1_Mus2 SINE Alu -5 142 4 6 2030 1184 225 19 95 chr1 189424813 189425035 -7770397 - ORR1E LTR MaLR -143 216 2 6 2030 1752 170 12 74 chr1 189425480 189425817 -7769615 + ORR1A4 LTR MaLR 1 316 -13 6 2030 366 42 0 0 chr1 189425950 189425998 -7769434 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 2030 543 303 15 0 chr1 189426001 189426133 -7769299 + ID_B1 SINE B4 78 211 -13 6 2030 435 193 0 0 chr1 189426142 189426230 -7769202 + GA-rich Low_complexity Low_complexity 3 90 0 6 2030 227 236 0 14 chr1 189426226 189426299 -7769133 + A-rich Low_complexity Low_complexity 4 75 0 6 2030 21 0 0 0 chr1 189426647 189426668 -7768764 + AT_rich Low_complexity Low_complexity 1 21 0 6 2030 225 200 0 0 chr1 189426668 189426708 -7768724 - ID_B1 SINE B4 -7 217 178 6 2030 180 0 0 0 chr1 189427115 189427135 -7768297 + (A)n Simple_repeat Simple_repeat 1 20 0 6 2030 37 0 0 0 chr1 189427545 189427582 -7767850 + AT_rich Low_complexity Low_complexity 1 37 0 6 2030 600 62 0 0 chr1 189427648 189427729 -7767703 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 2030 207 0 0 0 chr1 189428333 189428356 -7767076 + (T)n Simple_repeat Simple_repeat 1 23 0 6 2030 324 0 0 0 chr1 189429032 189429068 -7766364 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 2030 214 241 0 17 chr1 189431078 189431137 -7764295 + G-rich Low_complexity Low_complexity 1 58 0 6 2030 189 0 0 0 chr1 189434200 189434221 -7761211 + (C)n Simple_repeat Simple_repeat 1 21 0 6 2030 411 73 0 0 chr1 189434788 189434843 -7760589 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 6 2030 215 217 65 0 chr1 189436713 189436759 -7758673 + polypyrimidine Low_complexity Low_complexity 6 54 0 6 2030 312 289 0 0 chr1 189437151 189437227 -7758205 - ID4_ SINE ID -3 80 5 6 2030 267 195 54 109 chr1 189438388 189438480 -7756952 + MT2B2 LTR ERVL 155 241 -343 6 2030 394 317 9 9 chr1 189438399 189438504 -7756928 + PB1D7 SINE Alu 6 110 -10 6 2030 382 256 12 0 chr1 189438997 189439083 -7756349 + PB1D10 SINE Alu 11 97 -20 6 2030 251 283 17 0 chr1 189439158 189439218 -7756214 + ID4_ SINE ID 12 72 -11 6 2030 558 86 0 0 chr1 189439220 189439301 -7756131 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 2030 506 296 0 0 chr1 189439428 189439543 -7755889 - ID_B1 SINE B4 -6 218 104 6 2030 205 268 26 66 chr1 189439549 189439625 -7755807 - MIR SINE MIR -185 77 5 6 2030 802 184 6 17 chr1 189440358 189440720 -7754712 + CT-rich Low_complexity Low_complexity 1 357 0 6 2030 889 167 7 0 chr1 189440726 189440870 -7754562 - B1_Mus2 SINE Alu 0 147 3 6 2030 442 318 103 7 chr1 189441099 189441254 -7754178 + ID_B1 SINE B4 48 217 -7 6 2030 220 72 47 23 chr1 189441983 189442026 -7753406 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 6 2030 289 340 19 0 chr1 189442513 189442619 -7752813 + C-rich Low_complexity Low_complexity 2 109 0 6 2030 276 130 0 0 chr1 189442641 189442687 -7752745 + (TCC)n Simple_repeat Simple_repeat 2 47 0 6 2030 202 348 0 0 chr1 189443390 189443551 -7751881 + (CTCTG)n Simple_repeat Simple_repeat 3 163 0 6 2030 280 307 43 17 chr1 189445031 189445147 -7750285 + B4 SINE B4 2 120 -172 6 2030 308 293 37 0 chr1 189446058 189446140 -7749292 + PB1D10 SINE Alu 1 85 -32 6 2030 364 267 0 22 chr1 189446173 189446307 -7749125 + (TG)n Simple_repeat Simple_repeat 1 131 0 6 2030 330 26 0 0 chr1 189446310 189446349 -7749083 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 2030 487 286 88 18 chr1 189446394 189446565 -7748867 - B3A SINE B2 -15 183 1 6 2030 293 293 7 113 chr1 189446955 189447023 -7748409 + B3A SINE B2 65 131 -67 6 2030 513 0 0 0 chr1 189447023 189447080 -7748352 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 2030 293 293 7 113 chr1 189447080 189447161 -7748271 + B3A SINE B2 132 198 0 6 2030 416 333 19 44 chr1 189449106 189449266 -7746166 - RSINE1 SINE B4 -4 161 6 6 2030 1415 62 15 5 chr1 189449487 189449683 -7745749 + L1Md_F2 LINE L1 6384 6581 -1 6 2030 269 378 32 24 chr1 189449687 189449939 -7745493 + MIR SINE MIR 8 261 -1 6 2030 547 278 124 45 chr1 189450673 189450940 -7744492 - B4 SINE B4 -2 290 3 7 2030 207 100 0 0 chr1 189451884 189451914 -7743518 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 2030 411 265 85 42 chr1 189452541 189452730 -7742702 - RMER30 DNA MER1_type -1 201 5 7 2030 405 0 0 0 chr1 189453341 189453386 -7742046 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 2030 216 0 0 0 chr1 189453386 189453409 -7742023 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 2030 491 66 0 13 chr1 189453409 189453485 -7741947 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 7 2030 731 224 12 0 chr1 189453508 189453669 -7741763 - B3A SINE B2 -35 163 1 7 2030 338 250 18 27 chr1 189454080 189454191 -7741241 + PB1D7 SINE Alu 5 114 -6 7 2030 313 299 198 26 chr1 189455502 189455694 -7739738 - MLT1G1 LTR MaLR -182 397 173 7 2030 310 302 37 28 chr1 189456175 189456284 -7739148 - PB1D10 SINE Alu -6 111 2 7 2030 279 337 54 38 chr1 189456440 189456625 -7738807 - RMER30 DNA MER1_type -1 201 14 7 2030 887 278 15 23 chr1 189456788 189457053 -7738379 + B4A SINE B4 1 263 -29 7 2030 1732 157 102 18 chr1 189457055 189457398 -7738034 - ORR1D1 LTR MaLR -2 372 1 7 2030 408 40 0 0 chr1 189457409 189457459 -7737973 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 2030 314 325 27 95 chr1 189457917 189458136 -7737296 - L1M2 LINE L1 -1621 4522 4322 7 2030 428 262 97 0 chr1 189458136 189458239 -7737193 - PB1D7 SINE Alu -7 113 1 7 2030 314 325 27 95 chr1 189458239 189458315 -7737117 - L1M2 LINE L1 -1822 4321 4247 7 2030 278 330 8 68 chr1 189458581 189458627 -7736805 + MER117 DNA MER1_type 35 80 -117 7 2030 2703 111 44 21 chr1 189458627 189459058 -7736374 + BGLII_B LTR ERVK 1 441 0 7 2030 278 330 8 68 chr1 189459058 189459128 -7736304 + MER117 DNA MER1_type 81 144 -53 7 2030 443 281 136 30 chr1 189459356 189459620 -7735812 + B4 SINE B4 1 292 0 7 2030 644 155 0 19 chr1 189460982 189461087 -7734345 + B1_Mur1 SINE Alu 47 149 0 7 2030 219 69 0 0 chr1 189461325 189461354 -7734078 + (A)n Simple_repeat Simple_repeat 1 29 0 7 2030 208 91 22 22 chr1 189461374 189461419 -7734013 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 2030 216 122 0 0 chr1 189461575 189461616 -7733816 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 2030 308 94 19 0 chr1 189461625 189461678 -7733754 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 2030 301 256 0 44 chr1 189462651 189462741 -7732691 - PB1D10 SINE Alu -2 115 30 7 2030 288 270 0 0 chr1 189463304 189463378 -7732054 + PB1D10 SINE Alu 1 74 -43 7 2030 537 355 10 0 chr1 189463977 189464177 -7731255 - MARNA DNA Mariner -355 231 30 7 2030 252 0 0 0 chr1 189464539 189464567 -7730865 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 2030 266 267 0 0 chr1 189464936 189464996 -7730436 - RSINE1 SINE B4 0 165 106 7 2030 375 23 0 0 chr1 189465227 189465271 -7730161 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 2030 257 206 0 45 chr1 189465611 189465677 -7729755 + CT-rich Low_complexity Low_complexity 3 65 0 7 2030 528 267 38 43 chr1 189465697 189465881 -7729551 + RMER30 DNA MER1_type 13 195 -7 7 2030 208 245 35 44 chr1 189466061 189466155 -7729277 + MIRb SINE MIR 136 237 -31 7 2030 504 0 0 0 chr1 189466455 189466511 -7728921 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 2030 290 316 30 92 chr1 189466588 189466752 -7728680 - B4A SINE B4 -130 162 9 7 2030 939 308 43 11 chr1 189467073 189467421 -7728011 - Lx8 LINE L1 -274 7199 6841 7 2030 306 50 0 0 chr1 189468849 189468889 -7726543 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 7 2030 202 239 0 0 chr1 189470010 189470056 -7725376 + A-rich Low_complexity Low_complexity 1 46 0 7 2030 498 17 0 0 chr1 189471214 189471273 -7724159 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 2030 609 14 0 0 chr1 189471642 189471712 -7723720 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 2030 495 212 17 34 chr1 189473317 189473434 -7721998 + PB1D10 SINE Alu 2 116 -1 7 2030 198 0 0 0 chr1 189473662 189473684 -7721748 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 7 2030 288 0 0 0 chr1 189474695 189474727 -7720705 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 2030 225 0 0 0 chr1 189474728 189474753 -7720679 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 2030 28 71 0 0 chr1 189475550 189475606 -7719826 + AT_rich Low_complexity Low_complexity 1 56 0 7 2030 31 58 0 0 chr1 189475905 189475957 -7719475 + GC_rich Low_complexity Low_complexity 1 52 0 7 2030 222 62 0 0 chr1 189476069 189476101 -7719331 + (A)n Simple_repeat Simple_repeat 1 32 0 7 2030 265 47 23 23 chr1 189476278 189476322 -7719110 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 7 2030 192 97 0 0 chr1 189476836 189476867 -7718565 + (C)n Simple_repeat Simple_repeat 1 31 0 7 2030 279 0 0 0 chr1 189477877 189477908 -7717524 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 2030 665 174 0 8 chr1 189478433 189478566 -7716866 + (TCTA)n Simple_repeat Simple_repeat 1 132 0 7 2030 21 0 0 0 chr1 189480797 189480818 -7714614 + AT_rich Low_complexity Low_complexity 1 21 0 7 2030 864 170 0 0 chr1 189482521 189482734 -7712698 + (TG)n Simple_repeat Simple_repeat 1 213 0 7 2030 380 229 57 9 chr1 189482792 189482898 -7712534 + PB1D10 SINE Alu 7 117 0 7 2030 215 148 18 36 chr1 189482898 189482954 -7712478 + A-rich Low_complexity Low_complexity 1 55 0 7 2030 246 302 108 42 chr1 189483022 189483188 -7712244 + MIRb SINE MIR 21 197 -71 7 2030 201 39 0 0 chr1 189483513 189483539 -7711893 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 2030 203 284 40 40 chr1 189484945 189485044 -7710388 + L2b LINE L2 3277 3375 0 7 2030 976 274 17 14 chr1 189485535 189485824 -7709608 + B4A SINE B4 1 290 -2 7 2030 216 0 0 0 chr1 189488033 189488057 -7707375 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 2030 192 264 38 0 chr1 189489305 189489358 -7706074 + MIRb SINE MIR 198 252 -16 7 2030 200 214 0 23 chr1 189490032 189490075 -7705357 + CT-rich Low_complexity Low_complexity 2 43 0 7 2030 222 370 10 48 chr1 189491072 189491243 -7704189 + MIRb SINE MIR 45 224 -44 7 2030 300 322 77 0 chr1 189491864 189492007 -7703425 + MIR SINE MIR 102 255 -7 7 2030 369 319 26 14 chr1 189492161 189492361 -7703071 - MIRb SINE MIR -14 248 45 7 2030 237 180 0 0 chr1 189492498 189492548 -7702884 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 7 2030 225 0 0 0 chr1 189494072 189494097 -7701335 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 2030 609 255 54 0 chr1 189494346 189494495 -7700937 + B3A SINE B2 1 157 -41 7 2030 375 89 0 0 chr1 189494496 189494552 -7700880 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 2030 202 352 0 32 chr1 189496420 189496514 -7698918 - MIR SINE MIR -20 242 152 7 2030 22 0 0 0 chr1 189497038 189497060 -7698372 + AT_rich Low_complexity Low_complexity 1 22 0 7 2030 859 288 87 0 chr1 189497533 189497797 -7697635 + B4 SINE B4 2 288 -4 7 2030 619 293 108 20 chr1 189498164 189498390 -7697042 + B4A SINE B4 31 278 -14 7 2030 343 359 7 0 chr1 189499743 189499885 -7695547 + (TATG)n Simple_repeat Simple_repeat 4 146 0 7 2030 351 0 0 0 chr1 189499890 189499929 -7695503 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 2030 299 197 33 0 chr1 189499939 189500000 -7695432 - B4 SINE B4 -34 258 196 7 2030 614 266 31 26 chr1 189500000 189500193 -7695239 - B4 SINE B4 -97 195 2 1 2030 333 264 18 54 chr1 189502217 189502385 -7693047 - L1MA9 LINE L1 -374 5938 5777 2 2030 648 238 0 0 chr1 189502389 189502557 -7692875 + (TA)n Simple_repeat Simple_repeat 2 169 0 3 2030 219 36 0 0 chr1 189502557 189502585 -7692847 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 2030 311 250 0 33 chr1 189502593 189502684 -7692748 - L1MA9 LINE L1 -509 5788 5701 2 2030 2404 90 12 3 chr1 189502691 189503015 -7692417 - ORR1A2 LTR MaLR 0 327 1 5 2030 219 305 0 0 chr1 189503120 189503179 -7692253 + BC1_Mm scRNA scRNA 9 67 -85 6 2030 259 322 0 11 chr1 189503529 189503623 -7691809 - L1MC3 LINE L1 -942 6843 6751 7 2030 364 301 59 18 chr1 189506163 189506332 -7689100 - MLT1J1 LTR MaLR -247 197 22 8 2030 240 297 0 0 chr1 189506431 189506495 -7688937 + LSU-rRNA_Hsa rRNA rRNA 4971 5034 -1 9 2030 23 0 0 0 chr1 189506495 189506518 -7688914 + AT_rich Low_complexity Low_complexity 1 23 0 1 2030 787 241 0 91 chr1 189506539 189506749 -7688683 + ID_B1 SINE B4 22 212 -12 1 2030 369 43 0 0 chr1 189507679 189507726 -7687706 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 2030 839 262 68 34 chr1 189507729 189507994 -7687438 - B4A SINE B4 -18 274 1 1 2030 1278 0 0 0 chr1 189509321 189509463 -7685969 + (TCTCCC)n Simple_repeat Simple_repeat 3 144 0 1 2030 1185 74 0 0 chr1 189509713 189509861 -7685571 + B1_Mus1 SINE Alu 1 148 0 1 2030 225 0 0 0 chr1 189510125 189510150 -7685282 + (A)n Simple_repeat Simple_repeat 1 25 0 1 2030 1294 143 14 9 chr1 189513083 189513301 -7682131 - URR1B DNA MER1_type 0 225 7 1 2030 1177 126 21 5 chr1 189515336 189515527 -7679905 + B2_Mm2 SINE B2 1 194 -1 1 2030 237 65 0 0 chr1 189516061 189516092 -7679340 + (T)n Simple_repeat Simple_repeat 1 31 0 1 2030 311 60 0 20 chr1 189517227 189517278 -7678154 + (GGGTG)n Simple_repeat Simple_repeat 5 54 0 2 2030 383 184 26 0 chr1 189517834 189517910 -7677522 - ID_B1 SINE B4 -34 190 113 2 2030 402 115 0 0 chr1 189518600 189518661 -7676771 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 2030 267 79 0 0 chr1 189519128 189519166 -7676266 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2030 255 89 17 35 chr1 189520547 189520605 -7674827 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 2030 1084 112 70 38 chr1 189521155 189521340 -7674092 - B2_Mm2 SINE B2 -3 192 2 2 2030 210 71 0 0 chr1 189521791 189521819 -7673613 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 2 2030 213 47 0 65 chr1 189521943 189521989 -7673443 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 2030 415 298 113 0 chr1 189522904 189523028 -7672404 - RSINE1 SINE B4 -25 140 3 2 2030 250 362 32 12 chr1 189523031 189523214 -7672218 - MIRb SINE MIR -37 231 36 2 2030 990 247 34 53 chr1 189523930 189524195 -7671237 + B4 SINE B4 11 270 -22 3 2030 387 0 0 0 chr1 189524203 189524246 -7671186 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 2030 222 300 17 0 chr1 189524930 189524990 -7670442 + ID SINE ID 6 66 -158 3 2030 211 306 16 0 chr1 189524996 189525058 -7670374 + G-rich Low_complexity Low_complexity 1 63 0 3 2030 346 267 26 79 chr1 189525465 189525579 -7669853 + PB1D10 SINE Alu 1 108 -9 3 2030 252 0 0 0 chr1 189525587 189525615 -7669817 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 2030 411 21 0 0 chr1 189525615 189525662 -7669770 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 2030 237 319 181 0 chr1 189526133 189526249 -7669183 - B1F1 SINE Alu -12 137 1 3 2030 1335 126 13 13 chr1 189527475 189527700 -7667732 - URR1A DNA MER1_type -1 225 1 3 2031 432 0 0 0 chr1 189530821 189530869 -7664563 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 2031 22 35 0 0 chr1 189530922 189530951 -7664481 + AT_rich Low_complexity Low_complexity 1 29 0 4 2031 186 214 0 82 chr1 189531441 189531502 -7663930 + MIR SINE MIR 118 173 -89 4 2031 805 312 15 39 chr1 189531945 189532205 -7663227 + MTEa LTR MaLR 1 254 -125 4 2031 180 97 0 0 chr1 189533251 189533282 -7662150 + (T)n Simple_repeat Simple_repeat 1 31 0 4 2031 549 300 20 112 chr1 189533897 189534193 -7661239 - B4 SINE B4 -21 271 3 4 2031 393 284 201 0 chr1 189534512 189534681 -7660751 + MamSINE1 SINE tRNA 15 217 -73 4 2031 281 89 0 22 chr1 189534916 189534962 -7660470 + (TATG)n Simple_repeat Simple_repeat 2 46 0 4 2031 375 335 42 24 chr1 189535045 189535210 -7660222 - B4A SINE B4 -52 240 73 4 2031 449 17 17 0 chr1 189535237 189535295 -7660137 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 2031 261 0 0 0 chr1 189535295 189535323 -7660109 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 2031 206 105 0 26 chr1 189536319 189536358 -7659074 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 5 2031 240 268 14 0 chr1 189536529 189536600 -7658832 - tRNA-Gln-CAA_ tRNA tRNA -3 72 1 5 2031 679 256 43 10 chr1 189536966 189537175 -7658257 + B3 SINE B2 1 216 0 5 2031 420 20 0 0 chr1 189537349 189537398 -7658034 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 2031 399 68 0 0 chr1 189537398 189537457 -7657975 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 2031 227 333 52 9 chr1 189537904 189538019 -7657413 - ORR1E LTR MaLR -221 138 19 5 2031 400 290 0 0 chr1 189538074 189538181 -7657251 + ID_B1 SINE B4 109 215 -9 5 2031 245 29 0 29 chr1 189538182 189538217 -7657215 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 5 2031 265 346 72 32 chr1 189538939 189539190 -7656242 - L2 LINE L2 -437 2982 2722 5 2031 506 235 138 116 chr1 189539268 189539639 -7655793 + MTE2a LTR MaLR 1 379 0 5 2031 198 0 0 0 chr1 189539937 189539959 -7655473 + (TTA)n Simple_repeat Simple_repeat 2 23 0 6 2031 287 270 24 20 chr1 189540045 189540157 -7655275 - B1_Mus1 SINE Alu -3 114 5 6 2031 650 316 33 5 chr1 189540729 189540939 -7654493 + B4A SINE B4 56 271 -21 6 2031 399 21 0 0 chr1 189540970 189541018 -7654414 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 2031 387 0 0 0 chr1 189541018 189541060 -7654372 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 2031 247 253 0 32 chr1 189541228 189541322 -7654110 + (ATGTG)n Simple_repeat Simple_repeat 4 94 0 6 2031 432 0 0 0 chr1 189541782 189541830 -7653602 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 2031 461 188 0 25 chr1 189542152 189542272 -7653160 + (ATGGTG)n Simple_repeat Simple_repeat 4 120 0 6 2031 266 214 84 14 chr1 189542563 189542634 -7652798 + Tigger5 DNA MER2_type 2189 2264 -142 6 2031 1045 286 75 29 chr1 189542797 189543276 -7652156 - RMER5 LTR ERV1 0 534 34 6 2031 234 0 0 0 chr1 189543276 189543302 -7652130 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 2031 414 0 0 0 chr1 189543305 189543351 -7652081 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 2031 393 300 66 8 chr1 189544555 189544676 -7650756 + RSINE1 SINE B4 23 150 -15 7 2031 21 57 0 0 chr1 189545212 189545247 -7650185 + AT_rich Low_complexity Low_complexity 1 35 0 7 2031 576 309 57 63 chr1 189546264 189546596 -7648836 - ORR1E LTR MaLR -15 344 15 7 2031 1845 160 71 6 chr1 189546642 189546993 -7648439 - MTC LTR MaLR -9 412 39 7 2031 1719 74 66 4 chr1 189546996 189547253 -7648179 - ORR1A2 LTR MaLR -8 319 47 7 2031 284 54 0 0 chr1 189547273 189547310 -7648122 - ORR1A2 LTR MaLR -377 44 8 7 2031 619 300 26 74 chr1 189547323 189547633 -7647799 + MLT1B LTR MaLR 55 349 -41 7 2031 494 238 51 79 chr1 189547991 189548169 -7647263 - RMER20B LTR ERVK -448 179 7 7 2031 294 317 40 53 chr1 189548673 189548823 -7646609 + Arthur1A DNA Tip100 1 148 -29 7 2031 1232 237 40 4 chr1 189549158 189549433 -7645999 + MTEb LTR MaLR 2 286 -93 8 2031 317 320 16 8 chr1 189551181 189551304 -7644128 + (TG)n Simple_repeat Simple_repeat 2 125 0 8 2031 757 253 186 0 chr1 189551307 189551544 -7643888 - B4A SINE B4 -2 290 10 8 2031 3242 63 2 0 chr1 189552440 189552839 -7642593 - MTB LTR MaLR 0 400 1 8 2031 236 341 5 119 chr1 189554125 189554318 -7641114 + B4A SINE B4 4 174 -118 8 2031 213 189 0 0 chr1 189554454 189554491 -7640941 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 2031 944 154 34 17 chr1 189554702 189554721 -7640711 - B2_Mm1t SINE B2 0 193 175 8 2031 186 43 0 0 chr1 189554721 189554744 -7640688 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 2031 1091 63 1 26 chr1 189554744 189554902 -7640530 - B2_Mm2 SINE B2 -19 174 13 8 2031 226 282 0 93 chr1 189554825 189554911 -7640521 - RSINE1 SINE B4 -79 86 9 8 2031 4203 49 0 4 chr1 189555340 189555852 -7639580 - L1Md_F2 LINE L1 -12 6570 6061 8 2031 461 71 0 14 chr1 189556186 189556257 -7639175 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 9 2031 493 263 59 0 chr1 189556632 189556783 -7638649 + MLT1C LTR MaLR 3 162 -228 9 2031 1055 242 59 37 chr1 189556783 189557128 -7638304 + ORR1E LTR MaLR 1 378 -1 9 2031 503 345 13 31 chr1 189557144 189557371 -7638061 + MLT1C LTR MaLR 227 449 -18 9 2031 359 211 0 0 chr1 189557791 189557862 -7637570 - ID4 SINE ID -11 72 2 9 2031 1141 243 32 102 chr1 189558627 189559030 -7636402 - MTE2a LTR MaLR 0 379 5 9 2031 180 219 0 0 chr1 189561228 189561269 -7634163 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 2031 613 286 51 0 chr1 189561307 189561485 -7633947 - B4 SINE B4 -12 280 94 9 2031 342 0 0 0 chr1 189561991 189562029 -7633403 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 2031 257 281 190 15 chr1 189563169 189563306 -7632126 + B4 SINE B4 130 290 -2 9 2031 1034 153 20 35 chr1 189563353 189563386 -7632046 - B2_Mm2 SINE B2 -1 194 162 9 2031 189 0 0 0 chr1 189563386 189563407 -7632025 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 2031 1034 153 20 35 chr1 189563407 189563570 -7631862 - B2_Mm2 SINE B2 -34 161 1 9 2031 420 20 0 0 chr1 189563645 189563694 -7631738 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 2031 296 304 125 30 chr1 189563751 189563951 -7631481 - LFSINE_Vert SINE SINE -233 226 8 1 2031 451 301 35 0 chr1 189563980 189564093 -7631339 + ID_B1 SINE B4 91 207 -17 1 2031 292 323 48 83 chr1 189564093 189564125 -7631307 + B1_Mur4 SINE Alu 11 150 0 1 2031 241 284 98 2 chr1 189565677 189565782 -7629650 - L2a LINE L2 -34 3392 3263 1 2031 395 219 6 0 chr1 189566528 189566706 -7628726 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 2031 295 175 49 24 chr1 189566706 189566788 -7628644 + (CAGA)n Simple_repeat Simple_repeat 3 86 0 1 2031 471 216 0 0 chr1 189566797 189566964 -7628468 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 2031 756 153 0 0 chr1 189566979 189567149 -7628283 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 2031 806 265 80 5 chr1 189567834 189568035 -7627397 - ID_B1 SINE B4 -7 217 2 1 2031 459 0 0 0 chr1 189568298 189568349 -7627083 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 2031 216 0 0 0 chr1 189568708 189568732 -7626700 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 2031 383 98 16 0 chr1 189568732 189568792 -7626640 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 2031 195 129 0 0 chr1 189568828 189568859 -7626573 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 2031 948 249 47 52 chr1 189568866 189569225 -7626207 - ORR1E LTR MaLR 0 379 3 1 2031 714 220 9 124 chr1 189569635 189569853 -7625579 + B3A SINE B2 6 198 0 1 2031 249 135 0 0 chr1 189570093 189570145 -7625287 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 2031 213 108 0 0 chr1 189570222 189570259 -7625173 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 2031 294 50 0 0 chr1 189570259 189570299 -7625133 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 2031 252 0 0 0 chr1 189570306 189570334 -7625098 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 2031 234 227 0 0 chr1 189570343 189570387 -7625045 - LTR16C LTR ERVL -3 486 443 1 2031 674 12 12 0 chr1 189571014 189571097 -7624335 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 2031 1076 237 70 49 chr1 189571102 189571533 -7623899 - Arthur1 DNA Tip100 -75 3872 3433 1 2031 259 406 6 18 chr1 189571669 189571837 -7623595 - Arthur1 DNA Tip100 -3549 398 233 1 2031 345 151 0 0 chr1 189573544 189573630 -7621802 + (TGGG)n Simple_repeat Simple_repeat 3 88 0 1 2031 211 256 0 0 chr1 189573759 189573802 -7621630 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 2031 1038 149 0 2 chr1 189575769 189576309 -7619123 + (TG)n Simple_repeat Simple_repeat 1 538 0 1 2031 883 227 39 5 chr1 189578539 189578747 -7616685 + B3 SINE B2 2 216 0 1 2031 563 316 6 12 chr1 189578827 189579000 -7616432 - MER58A DNA MER1_type -11 213 42 1 2031 543 190 35 21 chr1 189579000 189579145 -7616287 + Lx9 LINE L1 7490 7636 -8 1 2031 600 264 58 49 chr1 189579165 189579408 -7616024 + B4 SINE B4 2 246 -46 1 2031 269 219 55 0 chr1 189579424 189579497 -7615935 - MER89-int LTR ERV1 -6463 338 262 1 2031 360 0 0 0 chr1 189579750 189579790 -7615642 + (CACG)n Simple_repeat Simple_repeat 4 43 0 1 2031 547 226 32 16 chr1 189580966 189581092 -7614340 + RSINE1 SINE B4 2 129 -36 1 2031 254 29 29 0 chr1 189581950 189581985 -7613447 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 2031 333 0 0 0 chr1 189582171 189582208 -7613224 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 2031 573 55 0 0 chr1 189582875 189582948 -7612484 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 2031 210 118 0 0 chr1 189582950 189582984 -7612448 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 1 2031 834 300 27 83 chr1 189583204 189583615 -7611817 - Lx8 LINE L1 -1 7472 7085 1 2031 488 264 57 0 chr1 189583615 189583755 -7611677 - B4A SINE B4 -58 234 87 1 2031 207 0 0 0 chr1 189584081 189584104 -7611328 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 2031 186 133 0 0 chr1 189584279 189584309 -7611123 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1 2031 484 308 130 3 chr1 189584312 189584696 -7610736 - L2 LINE L2 -410 3009 2577 1 2031 514 285 8 0 chr1 189584912 189585035 -7610397 + B4A SINE B4 169 292 0 1 2031 225 0 0 0 chr1 189585825 189585850 -7609582 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 2031 558 43 0 0 chr1 189585850 189585918 -7609514 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 2031 369 0 0 0 chr1 189586627 189586668 -7608764 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 2031 1570 305 86 16 chr1 189588655 189589643 -7605789 + L1MC LINE L1 4382 5439 -905 1 2031 525 104 0 0 chr1 189589805 189589882 -7605550 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1 2031 1070 89 7 0 chr1 189589882 189590028 -7605404 - B1_Mus2 SINE Alu 0 147 1 1 2031 242 273 109 27 chr1 189590544 189590691 -7604741 + MER5A1 DNA MER1_type 3 161 -5 1 2031 332 361 139 0 chr1 189590898 189591092 -7604340 - MER115 DNA Tip100 -461 232 12 1 2031 549 0 0 0 chr1 189594084 189594145 -7601287 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 2031 797 278 18 9 chr1 189594146 189594364 -7601068 - ID_B1 SINE B4 -2 222 3 1 2031 452 377 48 42 chr1 189594399 189594709 -7600723 - ORR1E LTR MaLR -40 319 8 1 2031 186 43 0 0 chr1 189594964 189594987 -7600445 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 2031 292 29 0 0 chr1 189596095 189596129 -7599303 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 2031 835 156 6 30 chr1 189596129 189596493 -7598939 + (TATG)n Simple_repeat Simple_repeat 1 355 0 1 2031 1922 183 61 11 chr1 189596493 189596935 -7598497 - MT2A LTR ERVL -40 493 30 1 2031 331 259 50 25 chr1 189597657 189597776 -7597656 - MTEa LTR MaLR -1 378 257 1 2031 791 231 60 25 chr1 189597797 189598070 -7597362 - ORR1E LTR MaLR -63 316 6 1 2031 265 225 87 76 chr1 189598193 189598352 -7597080 + MTD LTR MaLR 128 281 -126 1 2031 253 279 0 38 chr1 189599018 189599251 -7596181 + (ATGTG)n Simple_repeat Simple_repeat 1 224 0 1 2031 259 253 72 21 chr1 189599365 189599462 -7595970 - L2 LINE L2 -525 2894 2793 1 2031 349 257 90 5 chr1 189599463 189599629 -7595803 + L1ME2 LINE L1 5318 5497 -667 1 2031 351 0 0 0 chr1 189599684 189599723 -7595709 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 2031 333 0 0 0 chr1 189599723 189599759 -7595673 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 2031 276 290 62 39 chr1 189599963 189600092 -7595340 + L1ME2 LINE L1 6020 6151 -13 1 2031 764 300 74 12 chr1 189600117 189600373 -7595059 - B4A SINE B4 -19 273 2 1 2031 189 0 0 0 chr1 189600644 189600665 -7594767 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 2031 212 0 36 0 chr1 189601114 189601142 -7594290 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 2031 564 323 47 17 chr1 189601445 189601678 -7593754 - ORR1E LTR MaLR -119 240 1 1 2031 293 188 32 32 chr1 189602204 189602358 -7593074 + CT-rich Low_complexity Low_complexity 4 157 0 1 2031 571 212 19 26 chr1 189602358 189602513 -7592919 + RMER10B LTR ERVL 195 348 -50 1 2031 213 39 0 0 chr1 189602514 189602540 -7592892 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 2031 1014 197 25 0 chr1 189602558 189602761 -7592671 + B3 SINE B2 8 215 -1 1 2031 21 36 0 0 chr1 189603055 189603083 -7592349 + AT_rich Low_complexity Low_complexity 1 28 0 1 2031 415 368 0 18 chr1 189603083 189603249 -7592183 - RSINE1 SINE B4 0 165 3 1 2031 189 0 0 0 chr1 189603555 189603576 -7591856 + (A)n Simple_repeat Simple_repeat 1 21 0 1 2031 710 290 5 32 chr1 189604321 189604542 -7590890 + B3 SINE B2 1 215 -1 1 2031 531 0 0 0 chr1 189604941 189605000 -7590432 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 2031 318 260 50 93 chr1 189605025 189605165 -7590267 + RSINE1 SINE B4 2 135 -30 1 2031 26 30 0 0 chr1 189605184 189605217 -7590215 + AT_rich Low_complexity Low_complexity 1 33 0 1 2031 305 309 10 10 chr1 189605287 189605385 -7590047 + (TATG)n Simple_repeat Simple_repeat 4 101 0 1 2031 347 291 0 6 chr1 189605391 189605571 -7589861 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 2031 182 174 42 28 chr1 189605588 189605659 -7589773 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 1 2031 1156 216 9 5 chr1 189606543 189606757 -7588675 + B3 SINE B2 2 216 0 1 2031 269 273 102 0 chr1 189607543 189607631 -7587801 - MER2B DNA MER2_type -3 333 237 1 2031 910 248 133 24 chr1 189608168 189608544 -7586888 + MTD LTR MaLR 3 419 0 1 2031 638 193 18 14 chr1 189609498 189609723 -7585709 + CT-rich Low_complexity Low_complexity 1 226 0 1 2031 184 59 59 0 chr1 189611265 189611299 -7584133 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1 2031 261 0 0 0 chr1 189612078 189612107 -7583325 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 2031 220 191 0 0 chr1 189612390 189612437 -7582995 + CT-rich Low_complexity Low_complexity 2 48 0 1 2031 477 0 0 0 chr1 189612438 189612491 -7582941 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 2031 189 0 0 0 chr1 189612647 189612668 -7582764 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1 2031 893 264 5 5 chr1 189614632 189614849 -7580583 - ID_B1 SINE B4 -7 217 1 1 2031 31 58 0 0 chr1 189615316 189615368 -7580064 + AT_rich Low_complexity Low_complexity 1 52 0 1 2031 457 44 29 0 chr1 189615378 189615446 -7579986 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 2031 214 224 17 17 chr1 189615538 189615597 -7579835 - RSINE1 SINE B4 -104 61 3 1 2031 360 0 0 0 chr1 189617401 189617441 -7577991 + (TTGTG)n Simple_repeat Simple_repeat 3 42 0 1 2031 557 219 25 8 chr1 189617570 189617690 -7577742 - B1_Mur1 SINE Alu -20 129 8 1 2031 516 225 0 0 chr1 189618969 189619098 -7576334 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 2031 254 297 14 0 chr1 189619126 189619200 -7576232 - B4A SINE B4 -11 281 207 2 2031 237 132 0 0 chr1 189619416 189619454 -7575978 + (A)n Simple_repeat Simple_repeat 1 38 0 2 2031 189 107 0 0 chr1 189619717 189619745 -7575687 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 2 2031 189 0 0 0 chr1 189620122 189620143 -7575289 + (T)n Simple_repeat Simple_repeat 1 21 0 2 2031 378 0 0 0 chr1 189620779 189620821 -7574611 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 2031 487 320 239 19 chr1 189621144 189621609 -7573823 + MER21B LTR ERV1 121 690 -173 2 2031 627 51 0 0 chr1 189621609 189621688 -7573744 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 2031 487 320 239 19 chr1 189621688 189621700 -7573732 + MER21B LTR ERV1 691 703 -160 2 2031 494 248 0 0 chr1 189622735 189622840 -7572592 + B3 SINE B2 44 148 -68 2 2031 1034 242 151 12 chr1 189623255 189623586 -7571846 + MTE2b LTR MaLR 2 378 -1 2 2031 266 20 58 19 chr1 189623850 189623902 -7571530 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 2031 708 321 30 19 chr1 189625505 189625772 -7569660 - B4 SINE B4 -21 271 2 2 2031 524 289 100 4 chr1 189625898 189626138 -7569294 - L1MB3 LINE L1 -189 5994 5732 2 2031 485 292 89 42 chr1 189626815 189626828 -7568604 - B3A SINE B2 -22 176 166 2 2031 348 119 0 0 chr1 189626828 189626887 -7568545 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 2031 485 292 89 42 chr1 189626887 189627041 -7568391 - B3A SINE B2 -33 165 1 2 2031 297 128 0 0 chr1 189627358 189627405 -7568027 + (T)n Simple_repeat Simple_repeat 1 47 0 2 2031 555 201 110 0 chr1 189628478 189628632 -7566800 - URR1A DNA MER1_type 0 226 56 2 2031 300 102 0 0 chr1 189628815 189628864 -7566568 + (T)n Simple_repeat Simple_repeat 1 49 0 2 2031 609 154 0 0 chr1 189629320 189629430 -7566002 + CT-rich Low_complexity Low_complexity 1 110 0 2 2031 249 33 0 0 chr1 189629433 189629463 -7565969 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 2031 549 55 0 0 chr1 189629463 189629536 -7565896 + (GGGGA)n Simple_repeat Simple_repeat 4 76 0 2 2031 535 304 97 0 chr1 189629998 189630081 -7565351 + B4 SINE B4 35 132 -160 2 2031 435 19 0 0 chr1 189630081 189630133 -7565299 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2 2031 535 304 97 0 chr1 189630133 189630266 -7565166 + B4 SINE B4 133 271 -21 2 2031 204 216 0 0 chr1 189630285 189630322 -7565110 + (CATG)n Simple_repeat Simple_repeat 3 39 0 2 2031 363 23 0 0 chr1 189631434 189631478 -7563954 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 2 2031 228 67 0 0 chr1 189635095 189635125 -7560307 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 2031 387 283 56 48 chr1 189636016 189636265 -7559167 - MER121 Unknown Unknown -111 301 51 2 2031 431 296 30 0 chr1 189636605 189636737 -7558695 + ID_B1 SINE B4 10 145 -79 2 2031 353 233 6 31 chr1 189637054 189637201 -7558231 - B4 SINE B4 -149 143 1 2 2031 288 0 0 0 chr1 189637904 189637936 -7557496 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 2031 376 222 111 0 chr1 189637942 189638014 -7557418 + ORR1C1 LTR MaLR 72 151 -227 2 2031 621 27 0 0 chr1 189638014 189638089 -7557343 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 2031 376 222 111 0 chr1 189638089 189638115 -7557317 + ORR1C1 LTR MaLR 152 180 -198 2 2031 1040 51 14 0 chr1 189638824 189638962 -7556470 + (GGGAGA)n Simple_repeat Simple_repeat 6 145 0 2 2031 680 235 0 7 chr1 189638974 189639124 -7556308 - ORR1D2 LTR MaLR -221 149 1 2 2031 963 182 0 0 chr1 189639313 189639855 -7555577 + (TG)n Simple_repeat Simple_repeat 1 542 0 2 2031 360 0 0 0 chr1 189639856 189639896 -7555536 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 2031 500 310 28 0 chr1 189641016 189641161 -7554271 - RSINE1 SINE B4 -15 150 2 2 2031 962 118 0 7 chr1 189641315 189641452 -7553980 - B1_Mus1 SINE Alu -12 136 1 2 2031 958 284 78 63 chr1 189641709 189642247 -7553185 - L1MC1 LINE L1 -19 6314 5769 2 2031 443 259 0 12 chr1 189642782 189642954 -7552478 + (TATG)n Simple_repeat Simple_repeat 4 173 0 2 2031 222 211 0 0 chr1 189642957 189642995 -7552437 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 2031 277 272 0 26 chr1 189643006 189643157 -7552275 + (TATG)n Simple_repeat Simple_repeat 1 147 0 2 2031 225 139 23 0 chr1 189643607 189643650 -7551782 - MT2A LTR ERVL 0 533 490 2 2031 1469 77 0 20 chr1 189643999 189644197 -7551235 - B2_Mm2 SINE B2 0 195 2 2 2031 930 169 0 0 chr1 189644560 189644796 -7550636 + (CA)n Simple_repeat Simple_repeat 1 236 0 2 2031 309 104 0 0 chr1 189644797 189644845 -7550587 + HAL1-3A_ME LINE L1 1976 2023 -835 2 2031 1233 290 158 10 chr1 189645881 189646459 -7548973 + Lx8 LINE L1 6810 7473 0 2 2031 271 344 61 12 chr1 189647412 189647577 -7547855 - L2b LINE L2 -219 3156 2984 2 2031 510 17 0 0 chr1 189649231 189649290 -7546142 + (CAAAC)n Simple_repeat Simple_repeat 5 63 0 2 2031 642 229 132 0 chr1 189650401 189650545 -7544887 - RSINE1 SINE B4 0 165 3 2 2031 764 279 71 13 chr1 189651251 189651476 -7543956 + B4 SINE B4 52 289 -3 2 2031 29 0 0 0 chr1 189652346 189652375 -7543057 + AT_rich Low_complexity Low_complexity 1 29 0 2 2031 381 170 104 21 chr1 189652387 189652483 -7542949 - RSINE1 SINE B4 -33 132 29 2 2031 450 0 0 0 chr1 189654786 189654836 -7540596 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 2031 25 0 0 0 chr1 189655815 189655840 -7539592 + AT_rich Low_complexity Low_complexity 1 25 0 2 2031 453 344 24 24 chr1 189656307 189656471 -7538961 - RSINE1 SINE B4 0 165 2 2 2031 1035 97 0 0 chr1 189657777 189657921 -7537511 + B2_Mm2 SINE B2 1 144 -51 2 2031 465 19 0 0 chr1 189657925 189657979 -7537453 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 2031 1054 222 60 197 chr1 189658907 189659344 -7536088 + MTE2a LTR MaLR 3 379 0 2 2032 626 282 102 0 chr1 189663720 189663897 -7531535 - B4A SINE B4 -95 197 3 2 2032 23 33 0 0 chr1 189664819 189664849 -7530583 + AT_rich Low_complexity Low_complexity 1 30 0 2 2032 534 282 64 32 chr1 189665962 189666103 -7529329 + B3A SINE B2 5 147 -51 2 2032 501 17 0 0 chr1 189666103 189666161 -7529271 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 2032 450 0 0 0 chr1 189666161 189666210 -7529222 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 2032 534 282 64 32 chr1 189666210 189666254 -7529178 + B3A SINE B2 148 196 -2 2 2032 688 259 52 43 chr1 189666264 189666474 -7528958 + B3 SINE B2 5 216 0 2 2032 474 272 139 46 chr1 189666546 189666870 -7528562 + MTEa LTR MaLR 8 361 -18 2 2032 441 294 97 60 chr1 189666961 189667229 -7528203 + B4A SINE B4 1 278 -14 2 2032 523 206 6 6 chr1 189667299 189667460 -7527972 + (CA)n Simple_repeat Simple_repeat 1 161 0 2 2032 781 87 16 8 chr1 189668303 189668431 -7527001 + (TTTC)n Simple_repeat Simple_repeat 1 129 0 2 2032 429 247 47 160 chr1 189668431 189668643 -7526789 - B3A SINE B2 -1 197 7 2 2032 610 267 7 7 chr1 189669415 189669562 -7525870 + B3A SINE B2 2 148 -50 2 2032 351 0 0 0 chr1 189669562 189669601 -7525831 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 2032 437 208 78 31 chr1 189670096 189670225 -7525207 + MTEb LTR MaLR 238 372 -7 2 2032 649 308 14 14 chr1 189671526 189671737 -7523695 - ID_B1 SINE B4 -3 221 11 2 2032 586 307 103 29 chr1 189671998 189672512 -7522920 + L1MD1 LINE L1 3090 3641 -2505 2 2032 588 274 19 6 chr1 189672920 189673078 -7522354 + B3A SINE B2 1 160 -38 2 2032 453 36 0 0 chr1 189673082 189673137 -7522295 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 2032 772 148 28 14 chr1 189673371 189673515 -7521917 - B1_Mus2 SINE Alu 0 147 2 2 2032 457 192 7 116 chr1 189673515 189673553 -7521879 - MT2B LTR ERVL -446 155 134 2 2032 396 322 25 32 chr1 189673578 189673857 -7521575 + L1MD1 LINE L1 4431 4707 -1439 2 2032 282 299 118 61 chr1 189674076 189674304 -7521128 + L1MD1 LINE L1 4962 5202 -944 2 2032 405 324 50 36 chr1 189674477 189674698 -7520734 + L1MD1 LINE L1 5681 5904 -338 2 2032 241 224 65 84 chr1 189676426 189676533 -7518899 + MT2B LTR ERVL 156 260 -341 2 2032 746 197 23 0 chr1 189676438 189676570 -7518862 + ID_B1 SINE B4 88 222 -2 2 2032 609 105 0 0 chr1 189676584 189676679 -7518753 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 2 2032 872 282 84 40 chr1 189677697 189678044 -7517388 + MTE2a LTR MaLR 5 366 -13 2 2032 729 284 47 70 chr1 189678674 189678973 -7516459 + B4A SINE B4 1 292 0 2 2032 396 288 72 70 chr1 189679124 189679612 -7515820 - L1ME2 LINE L1 -46 6291 5795 2 2032 302 310 119 25 chr1 189679656 189679891 -7515541 + MTE-int LTR MaLR 1 257 -1323 2 2032 563 297 122 76 chr1 189680339 189680506 -7514926 - L1ME2 LINE L1 -3982 2418 2234 2 2032 571 48 24 0 chr1 189680506 189680589 -7514843 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 2032 563 297 122 76 chr1 189680589 189681043 -7514389 - L1ME2 LINE L1 -4167 2233 1744 2 2032 746 283 53 32 chr1 189681043 189681324 -7514108 - B4A SINE B4 -5 287 1 2 2032 616 284 111 38 chr1 189681324 189681724 -7513708 - L1ME2 LINE L1 -4587 1828 1349 2 2032 24 0 0 0 chr1 189682110 189682134 -7513298 + AT_rich Low_complexity Low_complexity 1 24 0 2 2032 505 243 87 13 chr1 189682154 189682304 -7513128 - B3A SINE B2 -36 162 2 2 2032 1724 202 151 8 chr1 189682340 189682818 -7512614 - RMER15 LTR ERVL -2 573 28 2 2032 1194 68 0 0 chr1 189682889 189683035 -7512397 - B1_Mus1 SINE Alu 0 148 3 2 2032 335 212 0 70 chr1 189683035 189683121 -7512311 - RMER15 LTR ERVL -494 81 2 2 2032 1231 300 140 17 chr1 189683170 189683892 -7511540 - L1ME2 LINE L1 -5422 978 168 2 2032 321 26 0 0 chr1 189684038 189684076 -7511356 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2032 1151 148 67 11 chr1 189684124 189684400 -7511032 - ORR1B2 LTR MaLR -8 359 1 2 2032 394 309 29 14 chr1 189684400 189684533 -7510899 - B4 SINE B4 -42 250 116 2 2032 285 297 51 112 chr1 189684528 189684706 -7510726 - B4 SINE B4 -122 170 4 2 2032 277 343 94 11 chr1 189684761 189684941 -7510491 - MIRb SINE MIR -16 252 58 2 2032 468 206 45 36 chr1 189685556 189685667 -7509765 + PB1D10 SINE Alu 3 114 -3 2 2032 4464 55 30 11 chr1 189687711 189688284 -7507148 + MT2B2 LTR ERVL 1 584 0 2 2032 182 323 61 0 chr1 189688398 189688497 -7506935 + MIR SINE MIR 91 195 -67 2 2032 781 286 38 24 chr1 189689244 189689531 -7505901 + B4A SINE B4 2 292 0 3 2032 495 78 0 0 chr1 189689606 189689683 -7505749 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 3 2032 475 282 12 31 chr1 189691336 189691497 -7503935 - B3A SINE B2 0 198 41 3 2032 3152 82 28 2 chr1 189691504 189691931 -7503501 - Lx3_Mus LINE L1 -148 6861 6424 3 2032 451 180 108 0 chr1 189691928 189692039 -7503393 + Lx3_Mus LINE L1 6866 6988 -21 3 2032 261 0 0 0 chr1 189692040 189692069 -7503363 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 2032 275 160 133 0 chr1 189692701 189692776 -7502656 - MLT1B LTR MaLR -52 338 254 3 2032 694 0 23 0 chr1 189693144 189693230 -7502202 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 2032 362 121 13 7 chr1 189693230 189693325 -7502107 - B2_Mm2 SINE B2 -15 180 47 3 2032 1344 73 23 0 chr1 189693337 189693514 -7501918 - B2_Mm2 SINE B2 -13 182 2 3 2032 389 207 34 34 chr1 189693746 189693921 -7501511 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 3 2032 276 241 63 7 chr1 189693870 189694012 -7501420 + (TA)n Simple_repeat Simple_repeat 2 151 0 3 2032 487 264 180 12 chr1 189694029 189694274 -7501158 - B4 SINE B4 0 292 7 3 2032 351 176 0 0 chr1 189694404 189694495 -7500937 + CT-rich Low_complexity Low_complexity 1 91 0 3 2032 472 158 22 39 chr1 189695294 189695472 -7499960 + GA-rich Low_complexity Low_complexity 1 175 0 3 2032 498 273 66 10 chr1 189695476 189695672 -7499760 + B4A SINE B4 15 221 -71 3 2032 270 0 0 0 chr1 189695696 189695726 -7499706 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 2032 396 0 0 0 chr1 189697178 189697222 -7498210 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 2032 219 114 0 0 chr1 189697680 189697715 -7497717 + (A)n Simple_repeat Simple_repeat 1 35 0 3 2032 336 83 0 0 chr1 189697898 189697946 -7497486 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 2032 812 277 95 8 chr1 189697987 189698249 -7497183 - B4 SINE B4 -2 290 6 3 2032 290 311 66 7 chr1 189698259 189698395 -7497037 + MER20 DNA MER1_type 61 204 -15 3 2032 402 94 0 0 chr1 189699677 189699741 -7495691 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 2032 286 316 0 30 chr1 189699814 189699915 -7495517 - B4A SINE B4 -2 290 193 3 2032 251 241 0 0 chr1 189700157 189700211 -7495221 + MER58B DNA MER1_type 247 300 -41 3 2032 212 312 31 0 chr1 189700404 189700468 -7494964 - ID4_ SINE ID -11 72 7 3 2032 300 200 0 0 chr1 189700630 189700695 -7494737 + (CACG)n Simple_repeat Simple_repeat 3 67 0 3 2032 201 356 25 33 chr1 189702322 189702444 -7492988 - L2 LINE L2 -474 2945 2825 3 2032 249 108 0 0 chr1 189703667 189703704 -7491728 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 2032 958 217 26 0 chr1 189703721 189703910 -7491522 - B3 SINE B2 -21 195 2 3 2032 368 300 0 26 chr1 189703969 189704082 -7491350 - RSINE1 SINE B4 -54 111 2 3 2032 737 252 94 105 chr1 189704579 189704654 -7490778 - ORR1E LTR MaLR 0 359 282 3 2032 207 0 0 0 chr1 189704654 189704677 -7490755 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 2032 737 252 94 105 chr1 189704677 189704964 -7490468 - ORR1E LTR MaLR -78 281 1 3 2032 363 183 0 14 chr1 189706021 189706093 -7489339 + ID4_ SINE ID 4 74 -9 3 2032 425 262 19 0 chr1 189706103 189706210 -7489222 + ID_B1 SINE B4 85 193 -31 3 2032 342 0 0 0 chr1 189706411 189706449 -7488983 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 2032 239 0 32 0 chr1 189708181 189708212 -7487220 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 2032 251 319 11 21 chr1 189708602 189708695 -7486737 + B1F1 SINE Alu 17 108 -41 3 2032 236 172 0 17 chr1 189708959 189709018 -7486414 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 3 2032 462 266 183 0 chr1 189709143 189709312 -7486120 + B3 SINE B2 1 200 -16 3 2032 3510 28 2 0 chr1 189709422 189709817 -7485615 - MTA_Mm LTR MaLR 0 396 1 3 2032 8338 64 8 3 chr1 189709817 189711006 -7484426 + L1_Mus4 LINE L1 5435 6629 -7 3 2032 359 296 0 20 chr1 189711134 189711234 -7484198 - ID_B1 SINE B4 -5 219 122 3 2032 283 333 36 36 chr1 189711234 189711266 -7484166 - B1F SINE Alu 0 144 13 3 2032 453 238 250 0 chr1 189711729 189711897 -7483535 - ID_B1 SINE B4 -6 218 9 3 2032 455 229 67 0 chr1 189711954 189712059 -7483373 - B1_Mur1 SINE Alu -36 113 2 3 2032 293 261 205 0 chr1 189712997 189713158 -7482274 - RMER15 LTR ERVL -19 556 363 3 2032 247 342 143 0 chr1 189713173 189713334 -7482098 - RMER15 LTR ERVL -3 572 389 3 2032 285 214 27 41 chr1 189713385 189713458 -7481974 - RMER15 LTR ERVL -497 78 7 3 2032 369 0 0 0 chr1 189713696 189713737 -7481695 + (TAG)n Simple_repeat Simple_repeat 2 42 0 3 2032 708 12 0 0 chr1 189714590 189714671 -7480761 + (CAAAG)n Simple_repeat Simple_repeat 2 82 0 3 2032 216 314 0 0 chr1 189714747 189714798 -7480634 + ID4_ SINE ID 22 72 -11 3 2032 248 127 18 0 chr1 189714958 189715013 -7480419 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 3 2032 198 143 0 0 chr1 189715012 189715047 -7480385 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 3 2032 197 33 33 0 chr1 189716408 189716438 -7478994 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 2032 303 127 0 0 chr1 189716456 189716519 -7478913 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 2032 1146 80 8 8 chr1 189717294 189717537 -7477895 + (TG)n Simple_repeat Simple_repeat 1 243 0 3 2032 1258 73 0 11 chr1 189717551 189717732 -7477700 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2032 23 0 0 0 chr1 189718194 189718217 -7477215 + AT_rich Low_complexity Low_complexity 1 23 0 3 2032 329 258 160 6 chr1 189718409 189718582 -7476850 + B3 SINE B2 14 213 -3 3 2032 282 56 0 0 chr1 189718663 189718699 -7476733 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 2032 978 265 42 35 chr1 189719316 189719605 -7475827 + B4A SINE B4 2 292 0 3 2032 793 215 153 8 chr1 189720363 189720635 -7474797 - MTD LTR MaLR -20 399 91 3 2032 536 0 0 15 chr1 189721243 189721308 -7474124 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 2032 599 283 89 89 chr1 189722098 189722389 -7473043 + B4 SINE B4 2 292 0 3 2032 276 315 11 0 chr1 189722390 189722482 -7472950 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 2032 207 0 0 0 chr1 189722504 189722527 -7472905 + (T)n Simple_repeat Simple_repeat 1 23 0 3 2032 315 0 0 0 chr1 189725903 189725938 -7469494 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2032 542 28 28 0 chr1 189726698 189726769 -7468663 + (TATG)n Simple_repeat Simple_repeat 4 76 0 3 2032 212 0 0 35 chr1 189726792 189726821 -7468611 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 2032 912 293 122 2 chr1 189726891 189727285 -7468147 - Lx8 LINE L1 -115 7358 6918 3 2032 464 291 72 128 chr1 189728149 189728453 -7466979 + B4A SINE B4 6 292 0 3 2032 405 211 0 0 chr1 189728453 189728576 -7466856 + (CA)n Simple_repeat Simple_repeat 1 123 0 3 2032 423 0 0 0 chr1 189730731 189730778 -7464654 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 2032 700 169 20 0 chr1 189730779 189730927 -7464505 + CT-rich Low_complexity Low_complexity 4 154 0 3 2032 355 288 8 8 chr1 189730931 189731050 -7464382 - L1MA8 LINE L1 -15 6276 6158 3 2032 324 0 0 0 chr1 189731234 189731270 -7464162 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 2032 333 0 0 0 chr1 189731270 189731306 -7464126 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 2032 234 0 0 0 chr1 189731676 189731702 -7463730 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 2032 216 286 26 13 chr1 189732215 189732293 -7463139 + MIR SINE MIR 76 154 -108 3 2032 582 12 0 89 chr1 189732719 189732809 -7462623 + L1_Mus1 LINE L1 6486 6567 0 3 2032 255 31 0 0 chr1 189732873 189732905 -7462527 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 2032 192 40 0 0 chr1 189733504 189733529 -7461903 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 2032 240 331 186 43 chr1 189733824 189734077 -7461355 + B4A SINE B4 4 292 0 3 2032 342 0 0 0 chr1 189734111 189734149 -7461283 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 2032 2854 162 51 4 chr1 189735264 189735754 -7459678 + Lx2 LINE L1 6485 6997 0 3 2032 273 300 0 0 chr1 189735763 189735833 -7459599 + ID4_ SINE ID 2 71 -12 3 2032 2860 102 86 2 chr1 189735917 189736022 -7459410 - Lx2 LINE L1 -6 6991 6886 3 2032 246 32 0 0 chr1 189736022 189736053 -7459379 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 2032 2860 102 86 2 chr1 189736053 189736387 -7459045 - Lx2 LINE L1 -112 6885 6517 3 2032 22 0 0 0 chr1 189737557 189737579 -7457853 + AT_rich Low_complexity Low_complexity 1 22 0 3 2032 367 202 9 9 chr1 189738214 189738324 -7457108 + (TA)n Simple_repeat Simple_repeat 2 111 0 3 2032 907 191 96 0 chr1 189738547 189738746 -7456686 + URR1A DNA MER1_type 9 226 0 3 2032 232 137 19 19 chr1 189739061 189739113 -7456319 + GA-rich Low_complexity Low_complexity 2 53 0 3 2032 385 233 78 0 chr1 189739256 189739372 -7456060 + B4 SINE B4 93 217 -75 3 2032 987 53 113 8 chr1 189739608 189739741 -7455691 + B1_Mm SINE Alu 1 147 0 3 2032 267 104 0 0 chr1 189739741 189739789 -7455643 + (A)n Simple_repeat Simple_repeat 1 48 0 3 2032 243 0 0 0 chr1 189740378 189740405 -7455027 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 2032 408 316 29 29 chr1 189740434 189740574 -7454858 - RSINE1 SINE B4 -23 142 3 3 2032 186 43 0 0 chr1 189740804 189740827 -7454605 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 2032 465 246 23 38 chr1 189741058 189741189 -7454243 - RSINE1 SINE B4 -35 130 2 3 2032 21 0 0 0 chr1 189742062 189742083 -7453349 + AT_rich Low_complexity Low_complexity 1 21 0 3 2032 273 196 0 0 chr1 189743850 189743906 -7451526 + (CGTG)n Simple_repeat Simple_repeat 4 59 0 3 2032 432 0 0 0 chr1 189744489 189744537 -7450895 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 2032 343 281 104 9 chr1 189745508 189745623 -7449809 - B1F SINE Alu -23 126 1 4 2032 342 0 0 0 chr1 189746172 189746210 -7449222 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 2032 3239 55 8 2 chr1 189746234 189746631 -7448801 - MTB LTR MaLR 0 400 2 4 2032 2768 193 104 27 chr1 189746666 189747744 -7447688 - Lx7 LINE L1 0 7696 6498 4 2032 729 0 0 0 chr1 189748252 189748333 -7447099 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 2032 224 330 22 0 chr1 189748556 189748647 -7446785 + B2_Mm2 SINE B2 2 94 -101 4 2032 330 300 175 64 chr1 189748731 189748902 -7446530 + B4A SINE B4 101 290 -2 4 2032 330 123 0 0 chr1 189748915 189748972 -7446460 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 2032 1327 239 82 6 chr1 189749002 189749343 -7446089 - MTE2b LTR MaLR 0 379 13 4 2032 424 242 174 154 chr1 189749351 189749529 -7445903 + L1MB1 LINE L1 5393 5605 -692 4 2032 1035 186 49 25 chr1 189749529 189749733 -7445699 + B3 SINE B2 1 209 -7 4 2032 676 307 77 46 chr1 189749733 189750186 -7445246 + L1MB1 LINE L1 5599 6043 -125 4 2032 252 223 16 18 chr1 189750218 189750289 -7445143 + ID4 SINE ID 3 72 -11 4 2032 235 353 0 0 chr1 189750603 189750688 -7444744 + Charlie24 DNA MER1_type 2366 2450 0 4 2032 630 343 71 31 chr1 189751361 189751683 -7443749 + MER2 DNA MER2_type 6 340 -5 4 2032 305 178 34 0 chr1 189752097 189752215 -7443217 + CT-rich Low_complexity Low_complexity 2 123 0 4 2032 473 231 32 16 chr1 189752252 189752375 -7443057 - B4 SINE B4 -2 290 166 4 2032 370 312 43 14 chr1 189752536 189752676 -7442756 - B4 SINE B4 -79 213 70 4 2032 270 0 0 0 chr1 189752736 189752766 -7442666 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 2032 241 290 77 47 chr1 189753094 189753264 -7442168 - L1MC3 LINE L1 -409 7376 7202 4 2032 1284 249 96 8 chr1 189753341 189753726 -7441706 - MTD LTR MaLR 0 419 1 4 2032 316 290 65 0 chr1 189754370 189754477 -7440955 + L1MA5 LINE L1 5852 5965 -335 4 2032 356 228 121 12 chr1 189754533 189754706 -7440726 + L1MA6 LINE L1 5908 6099 -201 4 2032 805 206 25 66 chr1 189754756 189754953 -7440479 + B3A SINE B2 4 192 -6 4 2032 600 337 152 66 chr1 189755674 189756160 -7439272 - MLT1F LTR MaLR -18 530 3 4 2032 1243 55 0 0 chr1 189756361 189756507 -7438925 + B1_Mus2 SINE Alu 2 147 0 4 2032 364 261 263 21 chr1 189756603 189756755 -7438677 + Lx8 LINE L1 7167 7335 -138 4 2032 267 0 70 0 chr1 189756755 189756798 -7438634 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 2032 364 261 263 21 chr1 189756798 189756888 -7438544 + Lx8 LINE L1 7336 7467 -6 4 2032 407 287 72 33 chr1 189757509 189757689 -7437743 + B3A SINE B2 3 189 -9 4 2032 22 70 0 0 chr1 189757924 189757967 -7437465 + AT_rich Low_complexity Low_complexity 1 43 0 4 2032 249 207 16 40 chr1 189758112 189758238 -7437194 + GA-rich Low_complexity Low_complexity 5 127 0 4 2032 391 60 35 23 chr1 189758393 189758479 -7436953 + (TTTTG)n Simple_repeat Simple_repeat 2 88 0 4 2032 2846 122 118 25 chr1 189758517 189759044 -7436388 - RMER4B LTR ERVK -9 576 1 4 2032 757 230 33 33 chr1 189759461 189759624 -7435808 + B3 SINE B2 3 168 -48 4 2032 432 0 0 0 chr1 189759624 189759672 -7435760 + (CATA)n Simple_repeat Simple_repeat 2 49 0 4 2032 757 230 33 33 chr1 189759672 189759719 -7435713 + B3 SINE B2 169 213 -3 4 2032 635 222 20 20 chr1 189760423 189760570 -7434862 + B1F SINE Alu 1 147 -2 4 2032 225 296 0 0 chr1 189760998 189761052 -7434380 + CT-rich Low_complexity Low_complexity 3 56 0 4 2032 724 243 7 7 chr1 189762034 189762187 -7433245 - RSINE1 SINE B4 -10 155 3 4 2032 360 0 0 0 chr1 189762797 189762837 -7432595 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 2032 29 28 0 0 chr1 189762968 189763004 -7432428 + AT_rich Low_complexity Low_complexity 1 36 0 4 2032 25 65 0 0 chr1 189763477 189763523 -7431909 + AT_rich Low_complexity Low_complexity 1 46 0 4 2032 341 254 253 6 chr1 189764209 189764375 -7431057 - ID_B1 SINE B4 -16 208 2 4 2032 495 0 0 0 chr1 189764381 189764436 -7430996 + (TTCTC)n Simple_repeat Simple_repeat 1 55 0 4 2032 666 202 12 6 chr1 189764439 189764608 -7430824 + CT-rich Low_complexity Low_complexity 1 170 0 4 2032 417 122 211 0 chr1 189764608 189764698 -7430734 - B1_Mus1 SINE Alu -6 142 34 4 2032 654 229 21 59 chr1 189765767 189765953 -7429479 - B3A SINE B2 -10 188 10 4 2032 277 103 21 65 chr1 189766968 189767061 -7428371 + A-rich Low_complexity Low_complexity 2 90 0 4 2032 264 77 0 0 chr1 189768828 189768867 -7426565 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 2032 37 23 0 0 chr1 189769317 189769361 -7426071 + AT_rich Low_complexity Low_complexity 1 44 0 4 2032 411 21 0 0 chr1 189769547 189769595 -7425837 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 2032 903 280 30 62 chr1 189769595 189769965 -7425467 - Lx9 LINE L1 -227 7417 7060 4 2032 333 0 0 0 chr1 189770816 189770853 -7424579 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 2032 719 300 18 25 chr1 189772436 189772713 -7422719 + B4A SINE B4 4 278 -14 4 2032 695 189 69 40 chr1 189773584 189774115 -7421317 - RMER17C LTR ERVK 0 410 1 4 2032 742 219 14 7 chr1 189774922 189775069 -7420363 - B1_Mur1 SINE Alu 0 149 2 4 2032 624 120 0 0 chr1 189775217 189775317 -7420115 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 2032 210 222 44 0 chr1 189775443 189775488 -7419944 + polypurine Low_complexity Low_complexity 3 49 0 4 2032 522 225 25 0 chr1 189776559 189776679 -7418753 - ID_B1 SINE B4 -21 203 81 4 2032 378 241 0 0 chr1 189777423 189777568 -7417864 + (TGGA)n Simple_repeat Simple_repeat 3 147 0 4 2032 583 309 69 88 chr1 189778834 189779196 -7416236 - ORR1E LTR MaLR -4 355 1 4 2032 304 200 88 0 chr1 189779385 189779464 -7415968 - PB1D7 SINE Alu -20 100 16 4 2032 241 297 98 10 chr1 189779725 189779827 -7415605 - B1F SINE Alu -21 128 18 4 2032 1010 214 0 10 chr1 189779840 189780034 -7415398 - B3 SINE B2 -24 192 1 4 2032 279 133 0 0 chr1 189780652 189780697 -7414735 + (T)n Simple_repeat Simple_repeat 1 45 0 4 2032 1896 132 37 28 chr1 189781470 189781796 -7413636 + ORR1A4 LTR MaLR 1 329 0 4 2032 769 209 73 26 chr1 189781797 189781936 -7413496 + B3 SINE B2 16 164 -52 4 2032 342 0 0 0 chr1 189781936 189781974 -7413458 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 2032 769 209 73 26 chr1 189781974 189782026 -7413406 + B3 SINE B2 165 216 0 4 2032 363 312 39 44 chr1 189783025 189783206 -7412226 - ID_B1 SINE B4 -8 216 37 4 2032 210 240 0 0 chr1 189783766 189783816 -7411616 + CT-rich Low_complexity Low_complexity 3 52 0 4 2032 255 282 0 14 chr1 189783934 189783945 -7411487 + (TG)n Simple_repeat Simple_repeat 2 12 0 4 2032 336 48 0 0 chr1 189783945 189783987 -7411445 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 2032 255 282 0 14 chr1 189783987 189784047 -7411385 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 2032 301 242 89 52 chr1 189784048 189784183 -7411249 - B1F SINE Alu -9 140 1 4 2032 413 254 25 5 chr1 189784675 189784878 -7410554 + CT-rich Low_complexity Low_complexity 1 207 0 4 2032 276 298 0 63 chr1 189784894 189785005 -7410427 + CT-rich Low_complexity Low_complexity 1 104 0 4 2032 284 263 12 48 chr1 189785008 189785105 -7410327 - ID4 SINE ID -53 99 6 4 2032 1580 62 0 0 chr1 189785121 189785313 -7410119 - B2_Mm1t SINE B2 -1 192 1 4 2032 183 42 0 0 chr1 189787673 189787697 -7407735 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 4 2032 1387 71 16 11 chr1 189788018 189788203 -7407229 - B2_Mm2 SINE B2 -9 186 1 4 2032 232 325 32 40 chr1 189788213 189788414 -7407018 + MIRb SINE MIR 37 228 -34 4 2032 25 0 0 0 chr1 189789797 189789822 -7405610 + AT_rich Low_complexity Low_complexity 1 25 0 4 2032 243 322 163 22 chr1 189791221 189791313 -7404119 + PB1 SINE Alu 20 124 -3 4 2032 185 140 0 57 chr1 189791404 189791457 -7403975 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 4 2032 1017 97 21 0 chr1 189791460 189791604 -7403828 - B1_Mus1 SINE Alu 0 148 2 4 31 1093 286 25 68 chr1 189791909 189792348 -7403084 + Lx8 LINE L1 7053 7472 -1 4 2033 762 11 0 0 chr1 189792803 189792890 -7402542 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 2033 534 246 42 0 chr1 189793987 189794129 -7401303 + B1F SINE Alu 1 148 -1 4 2033 891 293 99 26 chr1 189794293 189794748 -7400684 + Lx8 LINE L1 6982 7469 -4 4 2033 288 256 26 13 chr1 189794993 189795147 -7400285 + (TATG)n Simple_repeat Simple_repeat 3 158 0 4 2033 271 250 29 0 chr1 189795535 189795603 -7399829 + ID4 SINE ID 2 71 -12 4 2033 495 316 7 7 chr1 189795744 189795897 -7399535 + RSINE1 SINE B4 13 165 0 4 2033 290 260 14 0 chr1 189796354 189796427 -7399005 + B4A SINE B4 12 85 -207 4 2033 257 309 0 50 chr1 189796356 189796455 -7398977 + BC1_Mm scRNA scRNA 14 107 -45 4 2033 243 0 0 0 chr1 189796951 189796978 -7398454 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 4 2033 792 268 73 4 chr1 189797121 189797353 -7398079 - B4A SINE B4 -44 248 1 4 2033 411 21 0 0 chr1 189797545 189797593 -7397839 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 2033 591 53 0 0 chr1 189798622 189798697 -7396735 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 4 2033 261 308 25 25 chr1 189798701 189798821 -7396611 + GA-rich Low_complexity Low_complexity 3 122 0 4 2033 257 327 9 52 chr1 189798961 189799077 -7396355 - PB1D7 SINE Alu -1 119 9 4 2033 24 0 0 0 chr1 189800584 189800608 -7394824 + AT_rich Low_complexity Low_complexity 1 24 0 4 2033 534 103 0 0 chr1 189800700 189800778 -7394654 + (TCCC)n Simple_repeat Simple_repeat 1 78 0 4 2033 909 119 89 6 chr1 189801292 189801461 -7393971 - Lx LINE L1 0 6654 6472 4 2033 535 216 41 41 chr1 189801641 189801786 -7393646 - B4A SINE B4 -146 146 2 5 2033 384 156 35 53 chr1 189801988 189802275 -7393157 + (TG)n Simple_repeat Simple_repeat 1 281 0 5 2033 364 119 35 35 chr1 189802286 189802399 -7393033 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 2033 1429 62 17 0 chr1 189803878 189804055 -7391377 + B2_Mm2 SINE B2 2 181 -14 5 2033 276 30 0 0 chr1 189805612 189805645 -7389787 + (T)n Simple_repeat Simple_repeat 1 33 0 5 2033 214 211 0 0 chr1 189807058 189807096 -7388336 + T-rich Low_complexity Low_complexity 1 38 0 5 2033 230 206 0 14 chr1 189808660 189808729 -7386703 + GA-rich Low_complexity Low_complexity 4 71 0 5 2033 236 227 0 0 chr1 189808735 189808779 -7386653 - tRNA-Ala-GCY_ tRNA tRNA -26 49 6 5 2033 251 287 24 87 chr1 189808840 189808966 -7386466 - B1F SINE Alu -31 118 1 5 2033 180 0 0 0 chr1 189809598 189809618 -7385814 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 2033 378 0 0 0 chr1 189809618 189809659 -7385773 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 2033 276 175 83 48 chr1 189809698 189809782 -7385650 - B3A SINE B2 -111 87 1 5 2033 303 245 160 0 chr1 189810134 189810228 -7385204 - MER5B DNA MER1_type -7 171 63 5 2033 182 290 0 42 chr1 189810288 189810360 -7385072 - MIR SINE MIR -115 147 79 5 2033 194 0 0 37 chr1 189810421 189810448 -7384984 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 2033 231 36 0 0 chr1 189810598 189810626 -7384806 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 2033 261 269 0 15 chr1 189810787 189810855 -7384577 - ID4_ SINE ID -15 68 2 5 2033 319 274 0 0 chr1 189811511 189811584 -7383848 - RSINE1 SINE B4 -91 74 2 5 2033 483 299 0 34 chr1 189812014 189812163 -7383269 - RSINE1 SINE B4 -4 161 18 5 2033 353 281 35 111 chr1 189812293 189812331 -7383101 + B4 SINE B4 40 77 -215 5 2033 3197 69 0 0 chr1 189812331 189812738 -7382694 + L1Md_T LINE L1 6176 6582 0 5 2033 353 281 35 111 chr1 189812738 189812843 -7382589 + B4 SINE B4 78 172 -120 5 2033 1152 22 0 0 chr1 189813689 189813828 -7381604 + (TCCA)n Simple_repeat Simple_repeat 1 139 0 5 2033 21 0 0 0 chr1 189814101 189814122 -7381310 + AT_rich Low_complexity Low_complexity 1 21 0 5 2033 374 251 59 103 chr1 189814122 189814288 -7381144 + B3A SINE B2 1 174 -24 5 2033 477 0 0 0 chr1 189814288 189814341 -7381091 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 2033 335 251 59 103 chr1 189814341 189814378 -7381054 + B2_Mm2 SINE B2 166 195 0 5 2033 489 110 0 0 chr1 189815069 189815142 -7380290 + (TCC)n Simple_repeat Simple_repeat 2 74 0 5 2033 910 244 40 125 chr1 189815147 189815498 -7379934 - MTE2a LTR MaLR -39 340 20 5 2033 198 0 0 0 chr1 189816154 189816176 -7379256 + (A)n Simple_repeat Simple_repeat 1 22 0 5 2033 330 26 0 0 chr1 189817120 189817159 -7378273 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 2033 284 0 28 0 chr1 189817159 189817194 -7378238 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 2033 201 74 0 0 chr1 189819503 189819530 -7375902 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 2033 600 14 0 0 chr1 189820167 189820236 -7375196 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 2033 225 83 0 0 chr1 189820667 189820703 -7374729 + (A)n Simple_repeat Simple_repeat 1 36 0 5 2033 554 0 15 0 chr1 189820865 189820931 -7374501 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 2033 482 0 17 0 chr1 189821150 189821208 -7374224 + (TAA)n Simple_repeat Simple_repeat 2 60 0 5 2033 777 107 0 0 chr1 189822659 189822781 -7372651 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 2033 477 47 0 0 chr1 189823212 189823276 -7372156 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 2033 297 0 0 0 chr1 189823276 189823308 -7372124 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 2033 717 73 0 0 chr1 189823731 189823827 -7371605 + (TTTC)n Simple_repeat Simple_repeat 4 99 0 5 2033 30 0 0 0 chr1 189824802 189824832 -7370600 + AT_rich Low_complexity Low_complexity 1 30 0 5 2033 420 71 0 0 chr1 189825633 189825689 -7369743 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 2033 22 35 0 0 chr1 189827272 189827301 -7368131 + AT_rich Low_complexity Low_complexity 1 29 0 5 2033 293 171 12 136 chr1 189833288 189833369 -7362063 - MADE2 DNA Mariner 0 80 10 5 2033 345 34 33 17 chr1 189834183 189834243 -7361189 + (TTG)n Simple_repeat Simple_repeat 3 63 0 5 2033 396 0 0 0 chr1 189834243 189834287 -7361145 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 2033 516 264 7 35 chr1 189836108 189836253 -7359179 - B1_Mur4 SINE Alu -1 149 9 5 2033 4458 67 0 7 chr1 189836573 189837146 -7358286 - L1Md_F2 LINE L1 0 6582 6014 5 2033 191 36 36 0 chr1 189838353 189838381 -7357051 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 5 2033 22 56 0 0 chr1 189838943 189838979 -7356453 + AT_rich Low_complexity Low_complexity 1 36 0 5 2033 21 0 0 0 chr1 189839500 189839521 -7355911 + AT_rich Low_complexity Low_complexity 1 21 0 5 2033 455 216 138 26 chr1 189842346 189842498 -7352934 - B3 SINE B2 -15 201 33 5 2033 339 269 0 0 chr1 189842750 189843000 -7352432 + (TG)n Simple_repeat Simple_repeat 1 250 0 5 2033 532 254 87 16 chr1 189843366 189843550 -7351882 + ID_B1 SINE B4 2 198 -26 5 2033 587 215 88 15 chr1 189845903 189846040 -7349392 + B1_Mur2 SINE Alu 1 147 -2 5 2033 23 0 0 0 chr1 189846085 189846108 -7349324 + AT_rich Low_complexity Low_complexity 1 23 0 5 2033 241 258 136 0 chr1 189846454 189846520 -7348912 - RSINE1 SINE B4 -74 91 17 5 2033 463 290 7 40 chr1 189847174 189847325 -7348107 - B1F SINE Alu -2 147 2 5 2033 265 234 0 94 chr1 189847751 189847836 -7347596 - L1MD2 LINE L1 -65 6294 6218 5 2033 246 235 75 75 chr1 189847837 189847943 -7347489 + B1F1 SINE Alu 42 147 -2 5 2033 477 192 33 43 chr1 189847952 189848079 -7347353 + B1_Mur1 SINE Alu 13 136 -12 5 2033 243 61 0 0 chr1 189848079 189848112 -7347320 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 5 2033 366 237 28 84 chr1 189848112 189848127 -7347305 + B1_Mus1 SINE Alu 137 148 0 5 2033 719 161 7 0 chr1 189848127 189848264 -7347168 + GA-rich Low_complexity Low_complexity 4 141 0 5 2033 933 91 13 13 chr1 189848331 189848487 -7346945 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 5 2033 453 82 0 0 chr1 189848652 189848725 -7346707 - L1Md_F3 LINE L1 -12 6572 6500 5 2033 320 244 508 6 chr1 189849861 189850033 -7345399 - B4A SINE B4 -10 282 24 5 2033 641 129 0 8 chr1 189850125 189850242 -7345190 + (GGGA)n Simple_repeat Simple_repeat 1 116 0 5 2033 593 163 15 15 chr1 189850481 189850618 -7344814 + CT-rich Low_complexity Low_complexity 3 139 0 5 2033 371 242 30 38 chr1 189850713 189850846 -7344586 - ID_B1 SINE B4 -1 223 92 5 2033 376 285 0 16 chr1 189850731 189850856 -7344576 - B1F1 SINE Alu -26 123 1 5 2033 511 282 7 21 chr1 189850976 189851121 -7344311 - ID_B1 SINE B4 -2 222 80 5 2033 612 176 60 60 chr1 189851138 189851271 -7344161 - B1_Mur2 SINE Alu -16 133 1 5 2033 547 207 26 18 chr1 189851660 189851773 -7343659 + PB1D7 SINE Alu 5 118 -2 5 2033 413 355 0 6 chr1 189852168 189852338 -7343094 + (TG)n Simple_repeat Simple_repeat 1 169 0 5 2033 192 241 0 0 chr1 189852348 189852406 -7343026 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 2033 279 246 14 0 chr1 189852805 189852874 -7342558 + (TATG)n Simple_repeat Simple_repeat 2 71 0 5 2033 570 212 23 0 chr1 189853417 189853549 -7341883 - Tigger14a DNA MER2_type -97 227 93 5 2033 22 56 0 0 chr1 189854652 189854688 -7340744 + AT_rich Low_complexity Low_complexity 1 36 0 5 2033 21 0 0 0 chr1 189854888 189854909 -7340523 + AT_rich Low_complexity Low_complexity 1 21 0 5 2033 1307 135 4 22 chr1 189855585 189855812 -7339620 + URR1A DNA MER1_type 1 223 -3 5 2033 315 0 0 0 chr1 189855876 189855911 -7339521 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 2033 416 19 0 19 chr1 189856035 189856089 -7339343 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 5 2033 1059 95 19 0 chr1 189856089 189856247 -7339185 - B2_Mm2 SINE B2 -34 161 1 5 2033 293 0 27 0 chr1 189856833 189856870 -7338562 + (CCCCCA)n Simple_repeat Simple_repeat 3 40 0 5 2033 548 271 7 15 chr1 189858746 189858881 -7336551 + ID_B1 SINE B4 90 223 -1 5 2033 358 214 71 0 chr1 189858940 189859024 -7336408 + B3 SINE B2 127 216 0 5 2033 297 211 74 53 chr1 189861081 189861176 -7334256 + PB1D7 SINE Alu 23 119 -1 5 2033 238 354 132 0 chr1 189861245 189861373 -7334059 + RSINE1 SINE B4 2 148 -17 5 2033 369 95 0 0 chr1 189861373 189861436 -7333996 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 5 2033 238 354 132 0 chr1 189861436 189861451 -7333981 + RSINE1 SINE B4 149 163 -2 5 2033 914 227 40 0 chr1 189861507 189861705 -7333727 + B3 SINE B2 2 207 -9 5 2033 287 287 20 0 chr1 189863337 189863438 -7331994 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 2033 811 120 24 6 chr1 189863534 189863683 -7331749 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 5 2033 252 59 0 0 chr1 189863683 189863717 -7331715 + (CAAT)n Simple_repeat Simple_repeat 4 37 0 5 2033 811 120 24 6 chr1 189863717 189863735 -7331697 + (TCTA)n Simple_repeat Simple_repeat 4 21 0 5 2033 208 98 19 56 chr1 189863734 189863788 -7331644 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 2033 382 113 60 9 chr1 189863793 189863909 -7331523 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 5 2033 523 294 16 35 chr1 189863922 189864148 -7331284 - B4 SINE B4 0 292 74 5 2033 370 268 156 60 chr1 189864393 189864560 -7330872 - B3A SINE B2 -14 184 2 5 2033 390 74 48 24 chr1 189866513 189866596 -7328836 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 5 2033 204 182 0 0 chr1 189867166 189867210 -7328222 + CT-rich Low_complexity Low_complexity 3 46 0 5 2033 349 320 23 31 chr1 189867967 189868096 -7327336 - MER5A DNA MER1_type -60 129 2 5 2033 486 0 0 0 chr1 189868486 189868540 -7326892 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 2033 192 125 0 0 chr1 189868559 189868591 -7326841 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 6 2033 242 210 161 0 chr1 189868630 189868692 -7326740 - ID4_ SINE ID -11 72 1 6 2033 328 252 64 27 chr1 189868814 189868924 -7326508 - MER5B DNA MER1_type -56 122 9 6 2033 353 335 26 7 chr1 189868951 189869104 -7326328 + MER5A DNA MER1_type 1 156 -33 6 2033 241 278 0 40 chr1 189869927 189870002 -7325430 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 6 2033 393 287 10 10 chr1 189871750 189871852 -7323580 + PB1D10 SINE Alu 3 104 -13 6 2033 324 0 0 0 chr1 189871979 189872015 -7323417 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 2033 645 56 0 0 chr1 189872015 189872104 -7323328 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 2033 1595 130 118 67 chr1 189872581 189872894 -7322538 - ORR1A4 LTR MaLR 0 329 1 6 2033 459 0 0 0 chr1 189874072 189874123 -7321309 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 2033 397 253 12 12 chr1 189874531 189874703 -7320729 + (TATATG)n Simple_repeat Simple_repeat 6 177 0 6 2033 330 217 42 32 chr1 189874910 189875005 -7320427 - B1F1 SINE Alu -51 98 3 6 2033 561 213 65 32 chr1 189875914 189876069 -7319363 + ID_B1 SINE B4 63 222 -2 6 2033 22 0 0 0 chr1 189876113 189876135 -7319297 + AT_rich Low_complexity Low_complexity 1 22 0 6 2033 353 179 12 60 chr1 189876304 189876387 -7319045 - B3 SINE B2 -135 81 3 6 2033 225 278 62 97 chr1 189876982 189877074 -7318358 - PB1D7 SINE Alu -6 114 20 6 2033 259 319 0 0 chr1 189877514 189877586 -7317846 + ID2 SINE ID 2 73 -10 6 2033 380 131 0 14 chr1 189877588 189877658 -7317774 + (CAAT)n Simple_repeat Simple_repeat 4 72 0 6 2033 266 254 14 0 chr1 189878284 189878355 -7317077 - ID4 SINE ID -9 74 3 6 2033 596 237 98 37 chr1 189878355 189878487 -7316945 - L1MB2 LINE L1 -261 5910 5768 6 2033 180 0 0 0 chr1 189878487 189878507 -7316925 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 2033 596 237 98 37 chr1 189878507 189878589 -7316843 - L1MB2 LINE L1 -404 5767 5683 6 2033 282 270 49 20 chr1 189878601 189878703 -7316729 + B1F SINE Alu 38 142 -7 6 2033 240 59 0 0 chr1 189878852 189878886 -7316546 + (T)n Simple_repeat Simple_repeat 1 34 0 6 2033 23 0 0 0 chr1 189878964 189878987 -7316445 + AT_rich Low_complexity Low_complexity 1 23 0 6 2033 399 242 20 29 chr1 189879228 189879330 -7316102 - B3A SINE B2 -92 106 6 6 2033 255 191 0 0 chr1 189879883 189879951 -7315481 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 2033 335 196 30 71 chr1 189880016 189880115 -7315317 - PB1D10 SINE Alu -1 116 22 6 2033 204 281 0 0 chr1 189880183 189880311 -7315121 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 2033 254 222 11 0 chr1 189880340 189880430 -7315002 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 2033 446 288 52 7 chr1 189880433 189880587 -7314845 - RSINE1 SINE B4 -2 163 3 6 2033 539 287 84 11 chr1 189880782 189880972 -7314460 - ID_B1 SINE B4 -18 206 3 6 2033 275 341 108 0 chr1 189881178 189881307 -7314125 - B4A SINE B4 -148 144 2 6 2033 222 263 35 0 chr1 189881482 189881539 -7313893 + ID4_ SINE ID 2 60 -23 6 2033 273 98 0 0 chr1 189881539 189881580 -7313852 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 2033 426 171 0 0 chr1 189881599 189881675 -7313757 - PB1D10 SINE Alu -1 116 41 6 2033 354 318 23 0 chr1 189882201 189882333 -7313099 + MIR SINE MIR 2 136 -126 6 2033 186 43 0 0 chr1 189882648 189882671 -7312761 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 2033 381 43 0 0 chr1 189882673 189882720 -7312712 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 2033 216 305 98 0 chr1 189882927 189883009 -7312423 + PB1 SINE Alu 31 120 -7 6 2033 252 271 20 20 chr1 189883556 189883654 -7311778 - ID_B1 SINE B4 -125 99 2 6 2033 458 264 48 54 chr1 189883919 189884087 -7311345 + B4A SINE B4 124 290 -2 6 2033 477 254 11 63 chr1 189885445 189885708 -7309724 + (TATATG)n Simple_repeat Simple_repeat 1 249 0 6 2033 287 245 39 19 chr1 189885643 189885747 -7309685 + (TATG)n Simple_repeat Simple_repeat 1 106 0 6 2033 235 263 120 10 chr1 189885785 189885885 -7309547 - PB1D7 SINE Alu -5 115 5 6 2033 525 247 18 55 chr1 189885814 189885977 -7309455 - ID_B1 SINE B4 -67 157 1 6 2033 238 342 0 0 chr1 189886124 189886203 -7309229 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 2033 747 246 4 104 chr1 189886226 189886457 -7308975 - B4 SINE B4 0 292 85 6 2033 247 289 23 11 chr1 189887033 189887131 -7308301 - PB1D7 SINE Alu -50 99 1 6 2033 306 50 0 0 chr1 189887964 189888004 -7307428 + (CTA)n Simple_repeat Simple_repeat 3 42 0 6 2033 216 234 53 138 chr1 189888208 189888302 -7307130 - B4A SINE B4 -206 86 1 6 2033 207 0 0 0 chr1 189889482 189889505 -7305927 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 2033 720 246 31 0 chr1 189889514 189889705 -7305727 - B3A SINE B2 -1 197 1 6 2033 481 205 57 41 chr1 189889880 189889891 -7305541 - B1F1 SINE Alu 0 149 140 6 2033 213 121 0 0 chr1 189889891 189889924 -7305508 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 6 2033 481 205 57 41 chr1 189889924 189890034 -7305398 - B1F1 SINE Alu -10 139 26 6 2033 975 176 111 0 chr1 189892005 189892204 -7303228 - URR1B DNA MER1_type 0 225 5 6 2033 405 272 251 20 chr1 189893937 189894132 -7301300 + B4A SINE B4 51 290 -2 6 2033 270 0 0 0 chr1 189894225 189894255 -7301177 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 2033 735 12 0 0 chr1 189894568 189894652 -7300780 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 6 2033 274 123 55 0 chr1 189894652 189894725 -7300707 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 6 2033 540 0 0 0 chr1 189894776 189894836 -7300596 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 2033 491 229 40 16 chr1 189894996 189895120 -7300312 - B1F2 SINE Alu 0 149 23 6 2033 250 214 86 0 chr1 189895239 189895309 -7300123 + PB1D10 SINE Alu 42 117 0 6 2033 225 196 0 0 chr1 189895746 189895792 -7299640 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 2033 203 171 0 0 chr1 189896718 189896753 -7298679 + (ATG)n Simple_repeat Simple_repeat 3 37 0 6 2033 748 216 224 21 chr1 189896880 189897121 -7298311 + B4 SINE B4 3 292 0 6 2033 764 235 3 15 chr1 189897286 189897632 -7297800 + CT-rich Low_complexity Low_complexity 1 341 0 6 2033 29 0 0 0 chr1 189898527 189898556 -7296876 + AT_rich Low_complexity Low_complexity 1 29 0 6 2033 194 139 0 44 chr1 189898983 189899028 -7296404 + CT-rich Low_complexity Low_complexity 2 44 0 6 2033 310 333 6 81 chr1 189899410 189899570 -7295862 - B1F SINE Alu 0 149 2 6 2033 674 219 19 76 chr1 189899737 189899895 -7295537 - B1_Mur1 SINE Alu 0 149 1 6 2033 228 163 0 0 chr1 189901064 189901107 -7294325 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 2033 329 209 13 13 chr1 189901321 189901476 -7293956 + CT-rich Low_complexity Low_complexity 2 156 0 6 2033 363 312 36 0 chr1 189902740 189902852 -7292580 + PB1 SINE Alu 5 120 -7 6 2033 286 336 87 16 chr1 189903808 189903935 -7291497 - ID_B1 SINE B4 -80 144 9 6 2033 208 204 0 39 chr1 189905223 189905274 -7290158 + A-rich Low_complexity Low_complexity 4 52 0 6 2033 23 0 0 0 chr1 189905757 189905780 -7289652 + AT_rich Low_complexity Low_complexity 1 23 0 6 2033 402 100 0 0 chr1 189906671 189906731 -7288701 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 2033 200 258 16 16 chr1 189908361 189908424 -7287008 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 6 2033 324 167 14 70 chr1 189908641 189908712 -7286720 - HAL1-3A_ME LINE L1 -817 2041 1975 6 2033 714 197 0 0 chr1 189908712 189908859 -7286573 + (TA)n Simple_repeat Simple_repeat 2 148 0 6 2033 215 337 65 0 chr1 189910344 189910436 -7284996 + RSINE1 SINE B4 3 100 -65 6 2033 279 0 0 0 chr1 189910466 189910497 -7284935 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 2033 22 0 0 0 chr1 189910539 189910561 -7284871 + AT_rich Low_complexity Low_complexity 1 22 0 6 2033 246 156 0 0 chr1 189910639 189910684 -7284748 + T-rich Low_complexity Low_complexity 1 45 0 6 2033 1038 123 0 0 chr1 189912253 189912415 -7283017 + (TG)n Simple_repeat Simple_repeat 1 162 0 6 2033 526 288 93 0 chr1 189912415 189912554 -7282878 - B3A SINE B2 -44 154 3 6 2033 517 285 117 81 chr1 189913460 189913708 -7281724 - B4 SINE B4 0 292 36 6 2033 415 283 12 162 chr1 189913847 189914020 -7281412 + RSINE1 SINE B4 4 150 -15 6 2033 259 353 31 55 chr1 189916305 189916468 -7278964 + MIRb SINE MIR 34 191 -77 6 2033 693 250 0 0 chr1 189916607 189916751 -7278681 - ID_B1 SINE B4 0 224 81 6 2033 207 279 59 0 chr1 189917729 189917797 -7277635 - L2c LINE L2 -190 3197 3126 6 2033 301 333 0 7 chr1 189918176 189918278 -7277154 + ID4_ SINE ID 16 115 -37 6 2033 785 115 34 7 chr1 189918280 189918429 -7277003 + GA-rich Low_complexity Low_complexity 1 153 0 6 2033 347 127 16 0 chr1 189918436 189918499 -7276933 + (GGA)n Simple_repeat Simple_repeat 3 66 0 6 2033 253 308 84 28 chr1 189919335 189919442 -7275990 - MIR SINE MIR -119 143 31 6 2033 568 290 7 33 chr1 189919753 189919903 -7275529 + B1F SINE Alu 4 149 0 6 2033 180 0 0 0 chr1 189920279 189920299 -7275133 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 2033 436 318 31 77 chr1 189920725 189921011 -7274421 + B4 SINE B4 2 274 -18 6 2033 360 148 0 0 chr1 189921937 189921998 -7273434 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 2033 351 0 0 0 chr1 189921998 189922037 -7273395 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 2034 314 326 43 0 chr1 189924449 189924541 -7270891 - MIR SINE MIR -148 114 19 6 2034 402 252 31 8 chr1 189925233 189925361 -7270071 - B1F1 SINE Alu -18 131 1 6 2034 26 0 0 0 chr1 189925472 189925498 -7269934 + AT_rich Low_complexity Low_complexity 1 26 0 7 2034 564 296 7 0 chr1 189926183 189926325 -7269107 + B3A SINE B2 15 157 -41 7 2034 486 61 0 0 chr1 189926340 189926406 -7269026 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 2034 185 0 40 0 chr1 189926411 189926436 -7268996 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 2034 354 23 0 0 chr1 189926436 189926479 -7268953 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 7 2034 305 314 96 82 chr1 189928414 189928684 -7266748 + B4 SINE B4 1 274 -18 7 2034 432 0 0 0 chr1 189928706 189928754 -7266678 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 2034 213 39 0 0 chr1 189929427 189929453 -7265979 + (T)n Simple_repeat Simple_repeat 1 26 0 7 2034 320 327 0 0 chr1 189930974 189931078 -7264354 + PB1D10 SINE Alu 13 116 -1 7 2034 909 310 10 14 chr1 189931081 189931369 -7264063 + B4 SINE B4 1 287 -5 7 2034 300 120 0 0 chr1 189931389 189931439 -7263993 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 2034 290 186 29 0 chr1 189932515 189932585 -7262847 + CT-rich Low_complexity Low_complexity 4 75 0 7 2034 669 25 0 0 chr1 189932677 189932756 -7262676 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 2034 442 280 23 8 chr1 189932792 189932925 -7262507 - RSINE1 SINE B4 -28 137 3 7 2034 327 65 0 0 chr1 189933814 189933860 -7261572 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 7 2034 207 167 0 0 chr1 189936349 189936391 -7259041 + T-rich Low_complexity Low_complexity 1 42 0 7 2034 462 187 0 42 chr1 189936492 189936587 -7258845 + Lx7 LINE L1 7534 7624 -72 7 2034 180 77 0 0 chr1 189936745 189936771 -7258661 + (T)n Simple_repeat Simple_repeat 1 26 0 7 2034 203 138 0 0 chr1 189937392 189937421 -7258011 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 7 2034 1014 157 0 0 chr1 189938588 189938766 -7256666 + T-rich Low_complexity Low_complexity 3 180 0 7 2034 445 304 57 65 chr1 189938814 189939043 -7256389 - B4 SINE B4 0 292 66 7 2034 192 143 0 0 chr1 189939686 189939728 -7255704 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 7 2034 618 303 60 0 chr1 189939779 189939964 -7255468 - ID_B1 SINE B4 -27 197 2 7 2034 416 182 28 34 chr1 189941492 189941668 -7253764 + CT-rich Low_complexity Low_complexity 4 178 0 7 2034 185 111 56 0 chr1 189942520 189942556 -7252876 + CT-rich Low_complexity Low_complexity 2 39 0 7 2034 474 180 179 9 chr1 189942579 189942691 -7252741 - B1_Mur2 SINE Alu -18 131 1 7 2034 423 0 0 0 chr1 189942772 189942819 -7252613 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 2034 331 253 23 6 chr1 189943442 189943613 -7251819 + (TA)n Simple_repeat Simple_repeat 1 174 0 7 2034 207 69 0 0 chr1 189944356 189944385 -7251047 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 7 2034 786 190 169 0 chr1 189944584 189944768 -7250664 - B3 SINE B2 0 216 2 7 2034 384 125 0 0 chr1 189944768 189944832 -7250600 + (TATG)n Simple_repeat Simple_repeat 4 67 0 7 2034 459 0 0 0 chr1 189945319 189945370 -7250062 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 2034 353 208 16 55 chr1 189947682 189947904 -7247528 + (TTATA)n Simple_repeat Simple_repeat 1 213 0 7 2034 287 206 49 43 chr1 189947820 189947982 -7247450 + (TATAA)n Simple_repeat Simple_repeat 3 165 0 7 2034 199 73 35 52 chr1 189947986 189948044 -7247388 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 2034 283 228 29 10 chr1 189948061 189948129 -7247303 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 7 2034 348 24 0 0 chr1 189948129 189948170 -7247262 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 7 2034 283 228 29 10 chr1 189948170 189948203 -7247229 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 7 2034 310 336 22 29 chr1 189949829 189949967 -7245465 - L1MC4 LINE L1 -958 7084 6948 7 2034 291 54 0 0 chr1 189949976 189950013 -7245419 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 7 2034 440 364 51 27 chr1 189950310 189950567 -7244865 - MER21B LTR ERV1 -462 401 139 7 2034 396 285 66 57 chr1 189950818 189951030 -7244402 - B4A SINE B4 -72 220 7 7 2034 243 88 0 0 chr1 189951715 189951749 -7243683 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 2034 305 125 60 45 chr1 189951977 189952044 -7243388 - HAL1-3A_ME LINE L1 -816 2042 1975 7 2034 448 254 11 0 chr1 189952058 189952235 -7243197 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 2034 372 217 0 0 chr1 189952704 189952787 -7242645 + Lx9 LINE L1 7554 7636 -8 7 2034 453 243 56 102 chr1 189952878 189953075 -7242357 - B3A SINE B2 -6 192 5 7 2034 1445 56 2 2 chr1 189954483 189954880 -7240552 + (TAGA)n Simple_repeat Simple_repeat 1 397 0 7 2034 845 276 78 11 chr1 189955264 189955535 -7239897 - MTD LTR MaLR -14 405 117 7 2034 226 314 177 36 chr1 189955563 189955689 -7239743 + B4A SINE B4 4 145 -147 7 2034 474 0 15 29 chr1 189955689 189955757 -7239675 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 7 2034 226 314 177 36 chr1 189955757 189955878 -7239554 + B4A SINE B4 146 286 -6 7 2034 23 0 0 0 chr1 189955958 189955981 -7239451 + AT_rich Low_complexity Low_complexity 1 23 0 7 2034 450 148 0 0 chr1 189956696 189956797 -7238635 + (CA)n Simple_repeat Simple_repeat 2 102 0 7 2034 24 67 0 0 chr1 189957166 189957211 -7238221 + AT_rich Low_complexity Low_complexity 1 45 0 7 2034 674 249 84 5 chr1 189957213 189957403 -7238029 - B3 SINE B2 -9 207 3 7 2034 490 347 83 24 chr1 189958814 189959307 -7236125 + Tigger7 DNA MER2_type 76 597 -1894 7 2034 722 207 0 6 chr1 189959344 189959514 -7235918 + (TG)n Simple_repeat Simple_repeat 1 169 0 7 2034 222 182 45 0 chr1 189959519 189959563 -7235869 + (CGTG)n Simple_repeat Simple_repeat 2 47 0 7 2034 232 388 10 0 chr1 189959563 189959666 -7235766 + Tigger7 DNA MER2_type 2379 2482 -9 7 2034 306 0 0 0 chr1 189960577 189960611 -7234821 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 2034 198 224 0 0 chr1 189961501 189961550 -7233882 + C-rich Low_complexity Low_complexity 3 51 0 7 2034 237 108 0 0 chr1 189962210 189962247 -7233185 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 7 2034 500 329 66 0 chr1 189962248 189962415 -7233017 - ID_B1 SINE B4 -15 209 32 7 2034 494 325 0 57 chr1 189962515 189962724 -7232708 + ID_B1 SINE B4 7 203 -21 7 2034 462 18 0 0 chr1 189962959 189963014 -7232418 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 2034 492 219 0 0 chr1 189963866 189964118 -7231314 + CT-rich Low_complexity Low_complexity 1 252 0 7 2034 28 29 0 0 chr1 189964440 189964475 -7230957 + AT_rich Low_complexity Low_complexity 1 35 0 7 2034 3150 48 2 20 chr1 189964608 189965011 -7230421 - L1Md_F2 LINE L1 0 6582 6187 7 2034 266 0 0 0 chr1 189965011 189965040 -7230392 + Lx2 LINE L1 5878 5906 -1091 7 2034 274 260 22 8 chr1 189965151 189965249 -7230183 + MIR SINE MIR 117 210 -58 7 2034 288 0 0 0 chr1 189966536 189966568 -7228864 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 7 2034 528 16 0 0 chr1 189966935 189966996 -7228436 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 7 2034 261 254 0 14 chr1 189967785 189967857 -7227575 + (TGGA)n Simple_repeat Simple_repeat 2 72 0 7 2034 387 0 0 0 chr1 189967989 189968032 -7227400 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 2034 1040 256 40 4 chr1 189968263 189968541 -7226891 - B4A SINE B4 -4 288 1 7 2034 471 290 8 0 chr1 189968594 189968725 -7226707 + RSINE1 SINE B4 5 136 -29 7 2034 214 372 0 0 chr1 189968935 189969021 -7226411 + CT-rich Low_complexity Low_complexity 2 87 0 7 2034 1261 34 0 0 chr1 189969318 189969465 -7225967 + B1_Mm SINE Alu 1 147 0 7 2034 21 0 0 0 chr1 189972594 189972615 -7222817 + AT_rich Low_complexity Low_complexity 1 21 0 7 2034 459 263 0 89 chr1 189972616 189972762 -7222670 + Lx8 LINE L1 7098 7230 -243 7 2034 279 0 0 0 chr1 189972836 189972867 -7222565 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 2034 488 310 101 0 chr1 189976012 189976170 -7219262 - MER20 DNA MER1_type 0 219 46 7 2034 308 276 94 39 chr1 189976348 189976476 -7218956 + B1F SINE Alu 12 146 -3 7 2034 869 257 53 0 chr1 189976486 189976692 -7218740 + B4A SINE B4 59 275 -17 7 2034 312 91 0 0 chr1 189976866 189976910 -7218522 + (GGA)n Simple_repeat Simple_repeat 3 46 0 7 2034 1220 48 7 0 chr1 189976910 189977055 -7218377 + B1_Mm SINE Alu 2 147 0 7 2034 246 32 0 0 chr1 189977055 189977086 -7218346 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 7 2034 635 170 17 11 chr1 189977884 189978062 -7217370 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 2034 1047 94 0 0 chr1 189978310 189978459 -7216973 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 7 2034 210 254 218 16 chr1 189979363 189979487 -7215945 - B3 SINE B2 0 216 68 7 2034 1411 75 21 5 chr1 189979696 189979885 -7215547 - B2_Mm2 SINE B2 -3 192 1 7 2034 253 197 14 14 chr1 189980049 189980121 -7215311 + (TA)n Simple_repeat Simple_repeat 1 72 0 7 2034 24 32 0 0 chr1 189980128 189980159 -7215273 + AT_rich Low_complexity Low_complexity 1 31 0 7 2034 382 255 31 0 chr1 189980335 189980433 -7214999 - B1F SINE Alu -8 141 41 7 2034 262 367 21 14 chr1 189982070 189982211 -7213221 + RMER15-int LTR ERVL 194 335 -4664 7 2034 1203 297 102 36 chr1 189982367 189983006 -7212426 + RMER15-int LTR ERVL 365 1045 -3954 7 2034 501 290 8 15 chr1 189983154 189983287 -7212145 + RSINE1 SINE B4 3 134 -31 7 2034 531 296 72 50 chr1 189983448 189983627 -7211805 + RMER15 LTR ERVL 277 467 -108 7 2034 1331 253 27 19 chr1 189983627 189984001 -7211431 - MTEa LTR MaLR 0 379 3 7 2034 531 296 72 50 chr1 189984001 189984099 -7211333 + RMER15 LTR ERVL 468 560 -15 7 2034 258 273 0 0 chr1 189985279 189985345 -7210087 + PB1D7 SINE Alu 42 107 -13 7 2034 357 92 84 0 chr1 189986921 189987040 -7208392 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 7 2034 378 0 0 0 chr1 189987265 189987307 -7208125 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 2034 437 304 26 121 chr1 189987538 189987770 -7207662 + B4 SINE B4 83 292 0 7 2034 448 121 22 0 chr1 189987803 189987894 -7207538 + (GA)n Simple_repeat Simple_repeat 2 94 0 8 2034 520 282 40 48 chr1 189989301 189989528 -7205904 - B4 SINE B4 0 292 68 8 2034 279 230 13 13 chr1 189991983 189992058 -7203374 - B4A SINE B4 -1 291 217 8 2034 448 292 144 13 chr1 189992192 189992428 -7203004 - B4A SINE B4 -23 269 3 8 2034 450 264 147 13 chr1 189992462 189992619 -7202813 - B4A SINE B4 -113 179 2 8 2034 506 198 41 0 chr1 189992828 189993000 -7202432 + CT-rich Low_complexity Low_complexity 1 179 0 8 2034 2237 182 74 70 chr1 189993389 189993915 -7201517 - RLTR11A LTR ERVK 0 528 1 8 2034 454 283 16 8 chr1 189994024 189994152 -7201280 + ID_B1 SINE B4 90 218 -6 8 2034 543 322 108 21 chr1 189997225 189997686 -7197746 - RMER5 LTR ERV1 0 534 34 8 2034 24 0 0 0 chr1 189997852 189997876 -7197556 + AT_rich Low_complexity Low_complexity 1 24 0 8 2034 329 324 0 18 chr1 189997987 189998097 -7197335 + B1F SINE Alu 41 148 -1 8 2034 253 171 69 58 chr1 189999032 189999119 -7196313 - MIRb SINE MIR -83 185 98 8 2034 1763 31 4 39 chr1 189999768 190000000 -7195432 - L1Md_F3 LINE L1 -2 6582 6359 8 2034 1536 33 0 16 chr1 190000000 190000184 -7195248 - L1Md_F2 LINE L1 -223 6359 6179 1 2034 1114 83 0 0 chr1 190000184 190000340 -7195092 - B2_Mm2 SINE B2 -37 158 3 2 2034 372 216 23 0 chr1 190003957 190004045 -7191387 - B3 SINE B2 -118 98 9 3 2034 640 218 30 0 chr1 190004678 190004811 -7190621 + B1_Mur1 SINE Alu 13 149 0 4 2034 567 262 52 57 chr1 190004818 190005012 -7190420 - B3A SINE B2 0 198 6 5 2034 321 255 214 18 chr1 190005757 190005925 -7189507 - MLT1A0 LTR MaLR -95 270 70 6 2034 199 261 0 0 chr1 190006255 190006301 -7189131 + MIRb SINE MIR 208 253 -15 7 2034 644 242 32 42 chr1 190007509 190007725 -7187707 - ID_B1 SINE B4 -9 215 2 8 2034 208 322 94 17 chr1 190007780 190007897 -7187535 - MIR3 SINE MIR -73 135 10 9 2034 414 276 35 12 chr1 190012207 190012379 -7183053 + GA-rich Low_complexity Low_complexity 5 180 0 1 2034 331 184 0 22 chr1 190013153 190013242 -7182190 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 2034 363 231 12 24 chr1 190013292 190013456 -7181976 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 2034 470 240 95 138 chr1 190013456 190013761 -7181671 - B4A SINE B4 0 292 1 1 2034 254 260 10 0 chr1 190014108 190014208 -7181224 + CT-rich Low_complexity Low_complexity 3 103 0 1 2034 525 154 0 0 chr1 190014432 190014523 -7180909 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 1 2034 21 0 0 0 chr1 190015299 190015320 -7180112 + AT_rich Low_complexity Low_complexity 1 21 0 1 2034 963 283 47 25 chr1 190017142 190017421 -7178011 + B4A SINE B4 8 292 0 1 2034 261 228 0 0 chr1 190017440 190017519 -7177913 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 2034 495 0 0 0 chr1 190017852 190017907 -7177525 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 2034 357 82 0 0 chr1 190019071 190019120 -7176312 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 2034 941 108 14 0 chr1 190019495 190019643 -7175789 + (TTCC)n Simple_repeat Simple_repeat 4 153 0 2 2034 396 97 0 0 chr1 190024072 190024134 -7171298 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 2034 228 258 96 22 chr1 190026808 190026911 -7168521 - MER106B DNA MER1_type -1 1058 950 2 2034 225 0 0 0 chr1 190026911 190026936 -7168496 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 2034 228 258 96 22 chr1 190026936 190026967 -7168465 - MER106B DNA MER1_type -110 949 915 2 2034 395 296 84 84 chr1 190027691 190027964 -7167468 - MER2 DNA MER2_type -1 344 72 2 2034 294 288 103 29 chr1 190027963 190028099 -7167333 - MLT1D LTR MaLR -50 455 310 2 2034 670 182 6 6 chr1 190028126 190028286 -7167146 + (TCCA)n Simple_repeat Simple_repeat 3 162 0 2 2034 259 258 30 0 chr1 190028299 190028365 -7167067 - PB1D10 SINE Alu -2 115 48 2 2034 409 271 57 0 chr1 190028478 190028618 -7166814 - MLT1D LTR MaLR -357 148 1 2 2034 230 299 0 13 chr1 190029966 190030044 -7165388 - ID4 SINE ID -5 78 2 2 2034 890 209 74 10 chr1 190030435 190030638 -7164794 + B3 SINE B2 1 216 0 2 2034 409 17 17 17 chr1 190030712 190030771 -7164661 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 2034 351 0 0 0 chr1 190031893 190031932 -7163500 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 3 2034 837 308 8 8 chr1 190031955 190032197 -7163235 + B4 SINE B4 2 243 -49 3 2034 183 42 0 0 chr1 190032791 190032815 -7162617 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 2034 270 0 0 0 chr1 190032828 190032858 -7162574 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3 2034 2623 147 0 42 chr1 190032872 190033328 -7162104 - Lx3C LINE L1 -225 6751 6315 3 2034 26 0 0 0 chr1 190034016 190034042 -7161390 + AT_rich Low_complexity Low_complexity 1 26 0 3 2034 702 179 0 0 chr1 190034481 190034654 -7160778 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 2034 198 270 0 0 chr1 190035305 190035368 -7160064 + CT-rich Low_complexity Low_complexity 2 64 0 3 2034 300 27 0 0 chr1 190038018 190038055 -7157377 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 2034 232 70 0 44 chr1 190038467 190038512 -7156920 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 2034 643 284 34 0 chr1 190040823 190040999 -7154433 - B3A SINE B2 -16 182 1 4 2034 180 0 0 0 chr1 190041227 190041247 -7154185 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 2034 5240 120 85 23 chr1 190042257 190043159 -7152273 + RMER17B LTR ERVK 1 958 0 4 2034 674 140 4 44 chr1 190043652 190043882 -7151550 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 2034 21 57 0 0 chr1 190044129 190044164 -7151268 + AT_rich Low_complexity Low_complexity 1 35 0 4 2034 1030 110 0 0 chr1 190044167 190044313 -7151119 + B1_Mus1 SINE Alu 1 146 -2 4 2034 186 206 0 0 chr1 190044555 190044589 -7150843 + MIR SINE MIR 50 83 -125 4 2034 396 0 0 0 chr1 190045019 190045063 -7150369 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 2034 288 0 0 0 chr1 190045063 190045094 -7150338 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 2034 243 0 0 0 chr1 190045094 190045120 -7150312 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 2034 283 314 48 41 chr1 190045124 190045270 -7150162 - ORR1E LTR MaLR -207 152 6 5 2034 260 367 59 50 chr1 190045991 190046332 -7149100 - MLT1J-int LTR MaLR -1034 353 10 5 2034 238 177 31 46 chr1 190047789 190047854 -7147578 - L1M5 LINE L1 -561 5612 5549 5 2034 310 298 71 0 chr1 190047937 190048157 -7147275 + (CTATG)n Simple_repeat Simple_repeat 1 235 0 5 2034 380 216 20 10 chr1 190049256 190049354 -7146078 - MTD LTR MaLR -24 395 297 5 2034 348 45 0 93 chr1 190050292 190050389 -7145043 + (AGGGGG)n Simple_repeat Simple_repeat 5 92 0 5 2034 225 0 0 0 chr1 190050713 190050738 -7144694 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 5 2034 790 227 7 10 chr1 190050889 190051177 -7144255 + CT-rich Low_complexity Low_complexity 1 287 0 5 2034 253 62 0 0 chr1 190051222 190051276 -7144156 - Lx2 LINE L1 0 6997 6956 5 2034 2845 52 8 3 chr1 190051289 190051653 -7143779 - L1_Mus2 LINE L1 0 6566 6201 6 2034 24 0 0 0 chr1 190052716 190052740 -7142692 + AT_rich Low_complexity Low_complexity 1 24 0 6 2034 1235 116 17 0 chr1 190052749 190052922 -7142510 + B2_Mm2 SINE B2 1 176 -19 6 2034 727 151 6 6 chr1 190052988 190053148 -7142284 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 2034 345 318 171 16 chr1 190054144 190054390 -7141042 - B4A SINE B4 -6 286 3 6 2035 1927 177 38 38 chr1 190054429 190054695 -7140737 - BGLII_B LTR ERVK -10 431 159 6 2035 2776 61 81 0 chr1 190054695 190055054 -7140378 + RLTR10 LTR ERVK 1 388 -2 6 2035 1927 177 38 38 chr1 190055054 190055209 -7140223 - BGLII_B LTR ERVK -283 158 10 6 2035 504 306 0 0 chr1 190055565 190055699 -7139733 + B3 SINE B2 77 210 -6 6 2035 242 263 0 0 chr1 190059768 190059824 -7135608 - PB1D7 SINE Alu -2 147 69 6 2035 270 320 128 48 chr1 190059946 190060133 -7135299 - MIR SINE MIR -21 241 40 6 2035 816 157 0 0 chr1 190061407 190061554 -7133878 + (TG)n Simple_repeat Simple_repeat 1 147 0 7 2035 1030 184 21 21 chr1 190063812 190064006 -7131426 - B3 SINE B2 -9 207 14 7 2035 825 185 8 22 chr1 190063997 190064212 -7131220 + MTC LTR MaLR 211 399 -22 7 2035 429 70 0 0 chr1 190065022 190065079 -7130353 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 7 2035 343 284 29 0 chr1 190065104 190065206 -7130226 - ID_B1 SINE B4 -4 220 116 7 2035 849 330 18 18 chr1 190067085 190067357 -7128075 + B4A SINE B4 9 280 -12 7 2035 288 0 0 0 chr1 190068512 190068544 -7126888 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 2035 442 347 46 31 chr1 190068652 190068911 -7126521 - Lx8 LINE L1 -303 7170 6908 7 2035 265 302 143 49 chr1 190069222 190069445 -7125987 - L1ME1 LINE L1 -29 6150 5907 7 2035 507 282 35 12 chr1 190069456 190069628 -7125804 - L1ME1 LINE L1 -345 5834 5659 7 2035 566 205 33 134 chr1 190069670 190069828 -7125604 - B3 SINE B2 -27 189 37 7 2035 638 74 32 0 chr1 190070214 190070309 -7125123 + (CCCTAA)n Simple_repeat Simple_repeat 2 99 0 8 2035 2431 134 59 0 chr1 190070898 190071270 -7124162 + ORR1B1 LTR MaLR 1 394 0 8 2035 207 0 0 0 chr1 190071777 190071800 -7123632 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 2035 670 209 79 6 chr1 190072876 190073040 -7122392 - B3A SINE B2 -18 180 5 8 2035 6044 147 56 3 chr1 190073219 190074860 -7120572 + Lx5 LINE L1 4844 6571 -479 8 2035 839 274 0 10 chr1 190074909 190075101 -7120331 + B3 SINE B2 20 209 -7 8 2035 319 208 511 7 chr1 190075131 190075270 -7120162 + B3 SINE B2 1 209 -7 8 2035 729 332 77 31 chr1 190075444 190075774 -7119658 + L1MB3 LINE L1 5636 5969 -214 8 2035 563 291 84 65 chr1 190075774 190076145 -7119287 + MTEa LTR MaLR 2 379 0 8 2035 729 332 77 31 chr1 190076145 190076333 -7119099 + L1MB3 LINE L1 5970 6178 -5 8 2035 805 253 30 0 chr1 190077296 190077462 -7117970 + B3A SINE B2 1 171 -27 8 2035 600 14 0 0 chr1 190077971 190078040 -7117392 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 9 2035 1487 117 0 0 chr1 190078058 190078263 -7117169 - L1_Mus3 LINE L1 -208 6430 6226 9 2035 1387 83 10 14 chr1 190078263 190078470 -7116962 + L1_Mus3 LINE L1 6414 6619 -19 9 2035 369 0 0 0 chr1 190078470 190078511 -7116921 + (TAA)n Simple_repeat Simple_repeat 3 43 0 9 2035 2200 205 36 17 chr1 190079056 190079468 -7115964 + MTC LTR MaLR 1 420 -1 9 2035 181 337 26 93 chr1 190079609 190079741 -7115691 + MIRb SINE MIR 45 174 -94 9 2035 759 213 35 14 chr1 190079741 190079884 -7115548 - B1_Mur1 SINE Alu -2 147 2 9 2035 181 337 26 93 chr1 190079884 190079944 -7115488 + MIRb SINE MIR 175 224 -44 9 2035 534 129 0 0 chr1 190080979 190081064 -7114368 + (TTCC)n Simple_repeat Simple_repeat 3 87 0 9 2035 432 0 0 0 chr1 190082207 190082255 -7113177 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 2035 380 255 116 41 chr1 190082306 190082478 -7112954 - MIRc SINE MIR -38 230 43 9 2035 1449 236 91 13 chr1 190082579 190082715 -7112717 - Lx2B LINE L1 -1 6999 6832 9 2035 4958 92 56 15 chr1 190082715 190083434 -7111998 - RMER17A LTR ERVK -3 748 1 1 2035 1449 236 91 13 chr1 190083434 190083692 -7111740 - Lx2B LINE L1 -169 6831 6574 9 2035 481 250 80 43 chr1 190084721 190084747 -7110685 - RSINE1 SINE B4 -5 160 125 1 2035 363 96 0 0 chr1 190084747 190084799 -7110633 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 2035 481 250 80 43 chr1 190084799 190084910 -7110522 - RSINE1 SINE B4 -41 124 18 1 2035 483 302 97 23 chr1 190088225 190088401 -7107031 - B3A SINE B2 -9 189 1 1 2035 281 48 0 45 chr1 190089420 190089464 -7105968 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1 2035 291 346 10 0 chr1 190090026 190090130 -7105302 + PB1D10 SINE Alu 1 105 -12 1 2035 210 231 0 0 chr1 190091816 190091881 -7103551 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 2035 393 22 0 0 chr1 190091910 190091956 -7103476 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 2035 387 0 0 0 chr1 190092031 190092074 -7103358 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 2035 650 291 60 0 chr1 190092734 190092933 -7102499 - B3 SINE B2 0 216 6 1 2035 434 270 105 26 chr1 190093052 190093204 -7102228 - B4 SINE B4 -73 219 56 1 2035 575 311 66 113 chr1 190093587 190093888 -7101544 - B4A SINE B4 0 292 6 1 2035 355 333 6 140 chr1 190095179 190095343 -7100089 + RSINE1 SINE B4 20 161 -4 1 2035 22 70 0 0 chr1 190095684 190095727 -7099705 + AT_rich Low_complexity Low_complexity 1 43 0 1 2035 634 265 37 31 chr1 190097030 190097221 -7098211 + B3A SINE B2 2 193 -5 1 2035 285 51 0 0 chr1 190097392 190097431 -7098001 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 2035 467 340 90 0 chr1 190097566 190097710 -7097722 + RSINE1 SINE B4 1 157 -8 1 2035 357 24 0 0 chr1 190097722 190097764 -7097668 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2035 497 341 43 11 chr1 190097858 190098042 -7097390 + Tigger5 DNA MER2_type 40 229 -2177 1 2035 215 370 73 33 chr1 190098178 190098329 -7097103 - L2a LINE L2 -328 3098 2942 1 2035 318 300 8 16 chr1 190100851 190100973 -7094459 - L1MA5 LINE L1 -6 6294 6174 1 2035 567 297 281 6 chr1 190100969 190101506 -7093926 - L1MA5 LINE L1 -7 6293 5589 1 2035 315 0 0 0 chr1 190101506 190101541 -7093891 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 2035 317 241 151 24 chr1 190101541 190101649 -7093783 - L1MA5 LINE L1 -715 5588 5469 1 2035 274 266 87 72 chr1 190101628 190101766 -7093666 - L1MA5 LINE L1 -161 6139 6000 1 2035 288 302 11 55 chr1 190101768 190101859 -7093573 - 5S rRNA rRNA -34 87 1 1 2035 301 264 64 32 chr1 190101862 190101987 -7093445 - L1MA5 LINE L1 -337 5963 5835 1 2035 247 295 39 45 chr1 190102205 190102361 -7093071 - L1MDa LINE L1 -1984 4553 4399 1 2035 439 300 40 50 chr1 190102661 190102861 -7092571 - L1MC LINE L1 -2196 3950 3753 1 2035 212 184 0 20 chr1 190103004 190103054 -7092378 + C-rich Low_complexity Low_complexity 2 50 0 1 2035 333 347 119 10 chr1 190103099 190103300 -7092132 - L1MDa LINE L1 -3268 3269 3047 1 2035 244 309 67 35 chr1 190103501 190103730 -7091702 - L1MDa LINE L1 -3623 2914 2676 1 2035 7907 67 12 17 chr1 190104102 190105563 -7089869 - L1_Mus1 LINE L1 0 6567 5119 1 2035 5155 68 3 12 chr1 190105563 190106205 -7089227 - L1Md_F2 LINE L1 -12 6570 5935 1 2035 5767 97 5 48 chr1 190106205 190106274 -7089158 - L1_Mus1 LINE L1 -765 5118 5059 1 2035 1935 132 56 0 chr1 190106274 190106578 -7088854 + L1_Mus1 LINE L1 4733 5053 -830 1 2035 385 302 94 62 chr1 190106579 190106854 -7088578 - L1MDa LINE L1 -4149 2484 2201 1 2035 334 278 59 29 chr1 190107036 190107243 -7088189 - L1MDa LINE L1 -4680 1953 1722 1 2035 232 174 0 0 chr1 190107367 190107413 -7088019 + A-rich Low_complexity Low_complexity 2 47 0 1 2035 236 307 59 24 chr1 190107482 190107652 -7087780 + L1MC LINE L1 2991 3166 -2980 1 2035 837 291 111 49 chr1 190108581 190108842 -7086590 - ORR1D2 LTR MaLR -1 369 84 1 2035 2072 159 35 103 chr1 190108842 190109248 -7086184 + ORR1C1 LTR MaLR 1 378 0 1 2035 4819 231 108 34 chr1 190109249 190110524 -7084908 + ORR1C1-int LTR MaLR 2 1370 0 1 2035 1999 177 25 61 chr1 190110524 190110916 -7084516 + ORR1C1 LTR MaLR 1 378 0 1 2035 837 291 111 49 chr1 190110916 190110995 -7084437 - ORR1D2 LTR MaLR -287 83 6 1 2035 24 53 0 0 chr1 190111644 190111682 -7083750 + AT_rich Low_complexity Low_complexity 1 38 0 1 2035 1282 309 41 42 chr1 190111729 190112365 -7083067 - Lx9 LINE L1 -17 7627 6993 1 2035 821 279 19 65 chr1 190112523 190112849 -7082583 - Lx9 LINE L1 -665 6979 6529 1 2035 894 349 42 69 chr1 190113270 190113818 -7081614 - MER44B DNA MER2_type -8 542 10 1 2035 757 334 113 36 chr1 190114839 190115905 -7079527 + L1_Rod LINE L1 1617 2766 -3377 1 2035 21 36 0 0 chr1 190116292 190116320 -7079112 + AT_rich Low_complexity Low_complexity 1 28 0 1 2035 212 222 22 0 chr1 190116612 190116657 -7078775 - B4 SINE B4 -245 47 2 1 2035 844 26 106 0 chr1 190116657 190116770 -7078662 - B2_Mm2 SINE B2 -15 180 56 1 2035 3884 142 13 13 chr1 190116770 190117377 -7078055 + Lx LINE L1 6033 6639 -15 1 2035 383 52 0 17 chr1 190117377 190117436 -7077996 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 2035 800 247 58 0 chr1 190117551 190117741 -7077691 - MTC LTR MaLR -203 218 18 1 2035 24 53 0 0 chr1 190118006 190118044 -7077388 + AT_rich Low_complexity Low_complexity 1 38 0 1 2035 1023 309 35 14 chr1 190121305 190121587 -7073845 + B4A SINE B4 1 288 -4 1 2035 207 100 0 0 chr1 190121655 190121685 -7073747 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 2035 415 167 11 11 chr1 190121903 190121994 -7073438 + (CATA)n Simple_repeat Simple_repeat 4 94 0 1 2035 345 356 66 47 chr1 190122392 190122666 -7072766 - B4A SINE B4 0 292 14 1 2035 935 201 94 10 chr1 190122828 190123029 -7072403 - URR1A DNA MER1_type 0 226 9 1 2035 297 0 0 0 chr1 190123268 190123301 -7072131 + (CCTG)n Simple_repeat Simple_repeat 1 33 0 1 2035 944 159 0 6 chr1 190123301 190123478 -7071954 + CT-rich Low_complexity Low_complexity 3 178 0 1 2035 506 78 0 0 chr1 190123478 190123542 -7071890 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 2035 210 37 0 0 chr1 190123909 190123936 -7071496 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 2035 488 228 207 45 chr1 190124177 190124356 -7071076 + B4 SINE B4 2 209 -83 1 2035 334 321 165 13 chr1 190124737 190124895 -7070537 + MTE-int LTR MaLR 1 182 -1398 1 2035 542 294 75 20 chr1 190124925 190125126 -7070306 + MTE-int LTR MaLR 254 465 -1115 1 2035 1440 302 29 12 chr1 190125126 190125618 -7069814 + Lx8 LINE L1 6617 7116 -357 1 2035 242 288 0 36 chr1 190125608 190125691 -7069741 + Lx8 LINE L1 7037 7116 -357 1 2035 23 33 0 0 chr1 190125816 190125846 -7069586 + AT_rich Low_complexity Low_complexity 1 30 0 1 2035 522 83 0 0 chr1 190126339 190126411 -7069021 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1 2035 1205 114 6 0 chr1 190126444 190126619 -7068813 - B2_Mm2 SINE B2 -18 177 2 1 2035 189 0 0 0 chr1 190127021 190127042 -7068390 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 2035 225 288 37 24 chr1 190127195 190127277 -7068155 - L1MC LINE L1 -2232 5650 5568 1 2035 219 405 44 32 chr1 190127616 190127774 -7067658 - RSINE1 SINE B4 -4 161 2 1 2035 234 0 0 0 chr1 190127877 190127903 -7067529 + (T)n Simple_repeat Simple_repeat 1 26 0 1 2035 396 219 0 0 chr1 190128127 190128250 -7067182 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 2035 591 305 58 13 chr1 190128251 190128407 -7067025 - RSINE1 SINE B4 0 165 3 1 2035 565 291 59 73 chr1 190128408 190128473 -7066959 - ID_B1 SINE B4 -5 219 155 1 2035 743 281 49 20 chr1 190128473 190128676 -7066756 - B3 SINE B2 -7 209 1 1 2035 565 291 59 73 chr1 190128676 190128829 -7066603 - ID_B1 SINE B4 -70 154 4 1 2035 258 236 127 0 chr1 190128890 190128945 -7066487 - ORR1E LTR MaLR -275 84 23 1 2035 450 0 0 0 chr1 190128945 190128995 -7066437 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 2035 297 0 0 0 chr1 190128995 190129027 -7066405 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 2035 333 0 0 0 chr1 190129886 190129923 -7065509 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 2035 216 0 0 0 chr1 190129923 190129946 -7065486 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 2035 277 224 46 23 chr1 190129980 190130154 -7065278 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 2035 384 22 0 0 chr1 190130154 190130199 -7065233 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 2035 671 280 40 11 chr1 190130397 190130574 -7064858 + B3A SINE B2 1 182 -16 1 2035 750 138 7 41 chr1 190130574 190130991 -7064441 + (CA)n Simple_repeat Simple_repeat 1 402 0 1 2035 1327 14 7 0 chr1 190131037 190131182 -7064250 + B1_Mm SINE Alu 2 147 0 1 2035 713 299 95 4 chr1 190131559 190131811 -7063621 + B4A SINE B4 2 276 -16 1 2035 342 0 0 0 chr1 190131827 190131865 -7063567 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 2035 7921 59 6 6 chr1 190132212 190133318 -7062114 + L1Md_F2 LINE L1 5441 6549 -33 1 2035 2502 0 0 0 chr1 190133318 190133579 -7061853 + L1Md_T LINE L1 6322 6582 0 1 2035 7921 59 6 6 chr1 190133579 190133614 -7061818 + L1Md_F2 LINE L1 6550 6581 -1 1 2035 38 22 0 0 chr1 190133638 190133683 -7061749 + AT_rich Low_complexity Low_complexity 1 45 0 1 2035 585 262 27 14 chr1 190133749 190133896 -7061536 + B1F SINE Alu 1 149 0 1 2035 921 131 11 11 chr1 190134691 190134868 -7060564 + GA-rich Low_complexity Low_complexity 4 180 0 1 2035 760 209 6 26 chr1 190134892 190135239 -7060193 + GA-rich Low_complexity Low_complexity 1 339 0 1 2035 1514 229 61 11 chr1 190135357 190135744 -7059688 + MTD LTR MaLR 9 405 -14 1 2035 624 137 0 0 chr1 190136050 190136152 -7059280 + (GGGAGA)n Simple_repeat Simple_repeat 6 107 0 1 2035 341 317 12 0 chr1 190136272 190136354 -7059078 + PB1D10 SINE Alu 34 116 -1 1 2035 564 125 62 0 chr1 190136491 190136587 -7058845 + ORR1C1 LTR MaLR 6 107 -271 1 2035 920 163 0 6 chr1 190136593 190136766 -7058666 + CT-rich Low_complexity Low_complexity 1 172 0 1 2035 216 158 0 0 chr1 190136785 190136823 -7058609 + CT-rich Low_complexity Low_complexity 4 41 0 1 2035 286 257 67 38 chr1 190136829 190136934 -7058498 + ORR1C1 LTR MaLR 166 273 -101 1 2035 1116 176 74 15 chr1 190137697 190137899 -7057533 + B3 SINE B2 3 216 0 1 2035 3700 23 2 0 chr1 190137915 190138310 -7057122 - MTA_Mm LTR MaLR 0 396 1 1 2035 1088 206 67 5 chr1 190138717 190138941 -7056491 - Lx9 LINE L1 -361 7283 7046 1 2035 1795 231 71 12 chr1 190138946 190139366 -7056066 - Lx9 LINE L1 -899 6745 6301 1 2035 347 232 92 92 chr1 190139408 190139517 -7055915 - PB1D10 SINE Alu -4 113 5 1 2035 266 247 0 27 chr1 190141351 190141426 -7054006 + Lx8 LINE L1 7392 7464 -9 1 2035 229 362 11 11 chr1 190141519 190141614 -7053818 - L1MC1 LINE L1 -71 6262 6168 1 2035 441 0 0 0 chr1 190142536 190142585 -7052847 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 2035 247 257 76 108 chr1 190143238 190143395 -7052037 - MLT1D LTR MaLR -246 259 108 1 2035 183 325 47 35 chr1 190144573 190144659 -7050773 + MIR SINE MIR 30 116 -146 1 2035 430 178 16 0 chr1 190145017 190145146 -7050286 + (TG)n Simple_repeat Simple_repeat 1 131 0 1 2035 722 226 65 27 chr1 190145524 190145713 -7049719 - B3A SINE B2 -31 185 1 1 2035 249 265 71 29 chr1 190145663 190145733 -7049699 - ZP3AR Satellite Satellite -118 94 22 2 2035 2025 42 0 0 chr1 190146176 190146413 -7049019 + L1Md_F2 LINE L1 5350 5586 -297 2 2035 8437 50 7 2 chr1 190146414 190147392 -7048040 + L1Md_F2 LINE L1 5588 6570 -12 2 2035 249 172 52 0 chr1 190147423 190147481 -7047951 - L1M LINE L1 -842 5331 5271 2 2035 777 219 22 38 chr1 190147900 190148085 -7047347 + B3A SINE B2 1 182 -16 2 2035 188 156 22 0 chr1 190148090 190148106 -7047326 + (CA)n Simple_repeat Simple_repeat 1 16 0 2 2035 261 0 0 0 chr1 190148106 190148135 -7047297 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 2035 188 156 22 0 chr1 190148135 190148163 -7047269 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 2035 459 0 0 0 chr1 190148169 190148220 -7047212 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 2035 329 43 21 0 chr1 190148219 190148266 -7047166 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 2035 930 78 0 32 chr1 190148273 190148322 -7047110 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 2035 293 47 23 0 chr1 190148322 190148365 -7047067 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 2035 930 78 0 32 chr1 190148365 190148501 -7046931 + (TC)n Simple_repeat Simple_repeat 1 131 0 2 2035 564 150 0 0 chr1 190148547 190148674 -7046758 + (TC)n Simple_repeat Simple_repeat 1 127 0 2 2035 261 0 0 0 chr1 190148706 190148735 -7046697 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 2035 233 98 24 0 chr1 190148735 190148775 -7046657 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 2035 476 178 0 18 chr1 190148781 190148947 -7046485 + CT-rich Low_complexity Low_complexity 1 163 0 2 2035 272 70 23 0 chr1 190148984 190149027 -7046405 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 2035 561 52 0 0 chr1 190149033 190149110 -7046322 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 2035 744 121 0 0 chr1 190149142 190149283 -7046149 + (TC)n Simple_repeat Simple_repeat 1 141 0 2 2035 760 133 0 23 chr1 190149315 190149432 -7046000 + polypyrimidine Low_complexity Low_complexity 60 173 0 2 2035 401 36 18 0 chr1 190149432 190149487 -7045945 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 2035 760 133 0 23 chr1 190149487 190149546 -7045886 + polypyrimidine Low_complexity Low_complexity 1 59 0 2 2035 501 120 0 0 chr1 190149576 190149668 -7045764 + (TC)n Simple_repeat Simple_repeat 2 93 0 2 2035 185 65 32 0 chr1 190149668 190149699 -7045733 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 2035 312 27 0 0 chr1 190149705 190149742 -7045690 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 2035 257 51 26 0 chr1 190149742 190149780 -7045652 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 2035 315 0 0 0 chr1 190149786 190149821 -7045611 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 2035 182 91 30 0 chr1 190149821 190149853 -7045579 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 2035 703 117 0 48 chr1 190149860 190149999 -7045433 + CT-rich Low_complexity Low_complexity 48 180 0 2 2035 329 43 21 0 chr1 190149999 190150046 -7045386 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 2035 703 117 0 48 chr1 190150046 190150095 -7045337 + polypyrimidine Low_complexity Low_complexity 1 47 0 2 2035 429 36 0 0 chr1 190150123 190150178 -7045254 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 2035 228 330 99 10 chr1 190150779 190150880 -7044552 + ID_B1 SINE B4 87 196 -28 2 2035 1674 291 58 25 chr1 190151076 190151678 -7043754 - Lx8 LINE L1 -228 7245 6624 2 2035 522 211 0 0 chr1 190151790 190151904 -7043528 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 2035 22 0 0 0 chr1 190152620 190152642 -7042790 + AT_rich Low_complexity Low_complexity 1 22 0 2 2035 1513 251 61 0 chr1 190153070 190153412 -7042020 - ORR1D2 LTR MaLR -7 363 1 2 2035 341 357 154 10 chr1 190154028 190154229 -7041203 + B4A SINE B4 7 236 -56 2 2035 207 0 0 0 chr1 190155645 190155668 -7039764 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 2035 791 129 7 0 chr1 190155669 190155824 -7039608 + (GA)n Simple_repeat Simple_repeat 2 157 0 2 2035 200 260 26 13 chr1 190155961 190156039 -7039393 + A-rich Low_complexity Low_complexity 3 81 0 2 2035 1069 218 117 0 chr1 190156431 190156729 -7038703 - Lx9 LINE L1 -8 7636 7304 2 2035 551 281 115 22 chr1 190156846 190157028 -7038404 - ORR1E LTR MaLR -9 350 152 2 2035 201 39 0 0 chr1 190157406 190157432 -7038000 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 2035 513 236 214 38 chr1 190157772 190158010 -7037422 - B4 SINE B4 -12 280 1 2 2035 26 30 0 0 chr1 190158999 190159032 -7036400 + AT_rich Low_complexity Low_complexity 1 33 0 2 2035 468 0 0 0 chr1 190159134 190159186 -7036246 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 2035 341 318 147 0 chr1 190159190 190159319 -7036113 - B3A SINE B2 -50 148 1 2 2035 476 297 109 40 chr1 190159319 190159648 -7035784 - L1M4 LINE L1 -1644 5000 4649 2 2035 21 0 0 0 chr1 190159648 190159669 -7035763 + AT_rich Low_complexity Low_complexity 1 21 0 2 2035 39974 60 1 23 chr1 190159669 190166580 -7028852 - L1Md_T LINE L1 0 6582 99 2 2035 326 346 84 8 chr1 190166612 190166743 -7028689 - B1F SINE Alu -7 142 2 2 2035 197 108 0 26 chr1 190167119 190167157 -7028275 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2 2035 252 0 0 0 chr1 190167863 190167891 -7027541 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 2035 352 292 122 38 chr1 190168252 190168644 -7026788 - L1M4 LINE L1 -2464 4180 3756 2 2035 424 364 93 48 chr1 190168743 190169184 -7026248 - L1M4 LINE L1 -6012 530 70 2 2035 1162 207 258 7 chr1 190169236 190169538 -7025894 - ORR1C1 LTR MaLR 0 378 1 2 2035 192 349 36 0 chr1 190170623 190170706 -7024726 - MIR3 SINE MIR -2 206 121 2 2035 338 324 122 65 chr1 190170794 190171507 -7023925 + L2a LINE L2 2668 3425 -1 2 2035 1248 274 24 38 chr1 190171621 190171962 -7023470 - ORR1E LTR MaLR 0 359 24 2 2035 966 119 0 28 chr1 190173723 190173905 -7021527 + (TCCCC)n Simple_repeat Simple_repeat 1 177 0 2 2035 219 225 0 0 chr1 190173905 190173945 -7021487 + C-rich Low_complexity Low_complexity 1 40 0 2 2035 635 255 193 82 chr1 190175623 190175714 -7019718 + MT2B LTR ERVL 4 93 -440 2 2035 245 29 29 0 chr1 190175714 190175748 -7019684 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 2035 693 259 138 74 chr1 190175748 190176009 -7019423 + MT2B LTR ERVL 94 513 -88 2 2035 386 43 58 0 chr1 190176017 190176086 -7019346 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 2035 283 170 39 39 chr1 190176090 190176194 -7019238 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 2 2035 489 34 0 0 chr1 190176220 190176279 -7019153 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 2035 238 196 0 0 chr1 190176303 190176359 -7019073 + MT2B LTR ERVL 546 601 0 2 2035 2255 230 36 88 chr1 190176377 190176963 -7018469 + MTC-int LTR MaLR 639 1567 -396 2 2035 369 0 0 0 chr1 190176963 190177004 -7018428 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 2035 2255 227 19 89 chr1 190177004 190177027 -7018405 + MTC-int LTR MaLR 1138 1148 -110 2 2035 1226 104 27 0 chr1 190177027 190177210 -7018222 - B2_Mm2 SINE B2 -4 191 4 2 2035 2255 227 19 89 chr1 190177210 190177313 -7018119 + MTC-int LTR MaLR 1149 1258 0 2 2035 2042 200 9 37 chr1 190177313 190177744 -7017688 + MTC LTR MaLR 1 419 -2 2 2035 375 353 52 109 chr1 190177815 190178082 -7017350 - B4A SINE B4 0 292 41 2 2035 324 322 40 34 chr1 190179240 190179388 -7016044 - B1F SINE Alu 0 149 1 2 2035 558 229 65 7 chr1 190179420 190179574 -7015858 + RSINE1 SINE B4 3 165 0 2 2035 613 189 12 0 chr1 190179574 190179738 -7015694 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 2035 567 211 0 0 chr1 190179753 190179919 -7015513 + (CA)n Simple_repeat Simple_repeat 2 167 0 2 2035 948 251 40 140 chr1 190179968 190180389 -7015043 - MTE2b LTR MaLR 0 379 1 2 2035 395 279 88 40 chr1 190180898 190181100 -7014332 - MLT1C LTR MaLR -17 450 262 2 2035 274 283 49 74 chr1 190181179 190181301 -7014131 - MLT1C LTR MaLR -344 123 5 2 2035 21 0 0 0 chr1 190182337 190182358 -7013074 + AT_rich Low_complexity Low_complexity 1 21 0 2 2035 26 30 0 0 chr1 190182969 190183002 -7012430 + AT_rich Low_complexity Low_complexity 1 33 0 2 2035 21 89 0 0 chr1 190183321 190183377 -7012055 + AT_rich Low_complexity Low_complexity 1 56 0 2 2035 213 108 0 0 chr1 190183911 190183948 -7011484 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 2035 981 303 33 0 chr1 190184196 190184437 -7010995 + B4 SINE B4 32 280 -12 2 2035 441 312 35 21 chr1 190185154 190185295 -7010137 - B1F1 SINE Alu -3 146 4 2 254 1593 120 11 11 chr1 190185312 190185573 -7009859 - Lx LINE L1 -6 6648 6388 2 2036 1941 86 102 0 chr1 190185581 190185894 -7009538 + L1_Mus4 LINE L1 5730 6074 -562 2 2036 222 138 34 17 chr1 190186078 190186137 -7009295 + GA-rich Low_complexity Low_complexity 2 61 0 2 2036 180 111 0 0 chr1 190186149 190186176 -7009256 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 2036 334 305 111 30 chr1 190187353 190187488 -7007944 - ID_B1 SINE B4 -9 215 70 2 2036 1666 213 42 24 chr1 190188907 190189287 -7006145 - MTD LTR MaLR -21 398 12 2 2036 252 0 0 0 chr1 190189364 190189392 -7006040 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2 2036 393 342 14 24 chr1 190189475 190189770 -7005662 - L1MA5A LINE L1 -380 5917 5592 2 2036 273 255 0 50 chr1 190189926 190190025 -7005407 + L1MC LINE L1 3787 3880 -2266 2 2036 803 257 18 83 chr1 190190660 190190889 -7004543 + B3 SINE B2 2 215 -1 2 2036 1065 289 108 31 chr1 190190901 190191901 -7003531 + L1MC LINE L1 4161 5237 -909 2 2036 362 312 92 31 chr1 190192711 190192906 -7002526 - Lx8 LINE L1 -238 7235 7029 2 2036 1360 95 11 0 chr1 190193084 190193273 -7002159 + B2_Mm2 SINE B2 1 191 -4 2 2036 216 97 0 0 chr1 190193476 190193507 -7001925 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 2036 687 116 0 0 chr1 190193661 190193782 -7001650 + (TC)n Simple_repeat Simple_repeat 1 121 0 2 2036 2235 210 39 90 chr1 190195650 190196294 -6999138 - RMER19C LTR ERVK 0 611 1 2 2036 280 231 173 0 chr1 190196903 190197007 -6998425 - L1MA4 LINE L1 -364 5936 5815 2 2036 490 125 42 0 chr1 190197221 190197317 -6998115 + CT-rich Low_complexity Low_complexity 2 101 0 2 2036 375 23 0 0 chr1 190197319 190197363 -6998069 + (TTCTC)n Simple_repeat Simple_repeat 2 45 0 2 2036 378 305 130 4 chr1 190197369 190197494 -6997938 + B1F SINE Alu 8 143 -6 2 2036 7007 4 0 0 chr1 190198029 190198846 -6996586 - L1Md_A LINE L1 -12 5871 5055 2 2036 6125 4 0 0 chr1 190198846 190199523 -6995909 + L1Md_A LINE L1 5906 6582 0 2 2036 398 155 20 20 chr1 190199694 190199793 -6995639 + Lx2B LINE L1 6823 6921 -79 2 2036 4855 84 6 3 chr1 190199793 190200458 -6994974 + L1_Mus3 LINE L1 5972 6638 0 2 2036 1054 246 81 49 chr1 190200474 190200766 -6994666 + RLTR40 LTR ERVK 351 646 -171 2 2036 287 49 24 0 chr1 190200766 190200807 -6994625 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 3 2036 1054 246 81 49 chr1 190200807 190200860 -6994572 + RLTR40 LTR ERVK 647 706 -111 2 2036 212 218 44 33 chr1 190200901 190200991 -6994441 + A-rich Low_complexity Low_complexity 1 91 0 3 2036 676 0 24 0 chr1 190201293 190201377 -6994055 + (CCCCAG)n Simple_repeat Simple_repeat 2 87 0 3 2036 1298 234 15 2 chr1 190201448 190202031 -6993401 - L1_Mur3 LINE L1 -4357 1520 929 3 2036 284 275 19 80 chr1 190202521 190202683 -6992749 + Tigger6b DNA MER2_type 1383 1534 -63 3 2036 564 309 14 0 chr1 190203381 190203520 -6991912 + RSINE1 SINE B4 4 144 -21 3 2036 465 34 0 0 chr1 190203531 190203590 -6991842 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 2036 256 192 36 51 chr1 190204181 190204318 -6991114 + (TTTA)n Simple_repeat Simple_repeat 4 138 0 3 2036 655 310 124 8 chr1 190204626 190204867 -6990565 - B4A SINE B4 -8 284 16 3 2036 239 297 40 13 chr1 190204802 190204877 -6990555 - B3A SINE B2 -120 78 2 3 2036 25 0 0 0 chr1 190205722 190205747 -6989685 + AT_rich Low_complexity Low_complexity 1 25 0 3 2036 1139 241 132 24 chr1 190206681 190207059 -6988373 + MTD LTR MaLR 1 419 0 3 2036 331 216 19 13 chr1 190207090 190207249 -6988183 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 2036 344 219 18 6 chr1 190207278 190207443 -6987989 + (CA)n Simple_repeat Simple_repeat 1 167 0 3 2036 306 228 32 11 chr1 190207451 190207544 -6987888 + (CATA)n Simple_repeat Simple_repeat 4 98 0 3 2036 261 163 0 0 chr1 190207545 190207594 -6987838 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3 2036 405 245 6 19 chr1 190207584 190207746 -6987686 + (CATA)n Simple_repeat Simple_repeat 3 162 0 3 2036 290 231 18 6 chr1 190207758 190207928 -6987504 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 2036 25 0 0 0 chr1 190208315 190208340 -6987092 + AT_rich Low_complexity Low_complexity 1 25 0 3 2036 506 176 45 18 chr1 190208554 190208664 -6986768 + RMER4B LTR ERVK 150 262 -323 3 2036 738 175 0 0 chr1 190208670 190209012 -6986420 + (CTG)n Simple_repeat Simple_repeat 1 342 0 3 2036 645 185 0 0 chr1 190209027 190209200 -6986232 + (CTG)n Simple_repeat Simple_repeat 2 174 0 3 2036 314 216 0 15 chr1 190209183 190209319 -6986113 + CT-rich Low_complexity Low_complexity 3 136 0 3 2036 390 273 0 0 chr1 190209351 190209439 -6985993 + RMER4B LTR ERVK 343 430 -155 3 2036 351 0 0 0 chr1 190210405 190210444 -6984988 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 2036 297 0 0 0 chr1 190210444 190210476 -6984956 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 2036 672 333 55 52 chr1 190210513 190210804 -6984628 - B4 SINE B4 0 292 1 3 2036 224 273 0 18 chr1 190211336 190211392 -6984040 + ID_B1 SINE B4 81 135 -89 3 2036 207 186 0 0 chr1 190211424 190211467 -6983965 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 2036 335 314 74 48 chr1 190212596 190212827 -6982605 + L1M4 LINE L1 3610 3846 -2300 3 2036 834 144 27 7 chr1 190212830 190212977 -6982455 - ORR1D1 LTR MaLR -219 155 6 3 2036 663 57 0 0 chr1 190213067 190213155 -6982277 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 2036 294 29 0 0 chr1 190213155 190213189 -6982243 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 2036 394 262 206 27 chr1 190214374 190214481 -6980951 + B4A SINE B4 1 121 -171 3 2036 437 50 0 16 chr1 190214481 190214542 -6980890 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 2036 394 262 206 27 chr1 190214542 190214618 -6980814 + B4A SINE B4 122 217 -75 3 2036 471 18 0 0 chr1 190215452 190215508 -6979924 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 2036 226 309 87 16 chr1 190216200 190216384 -6979048 + L1M4b LINE L1 1627 1823 -5264 3 2036 345 307 45 26 chr1 190216570 190216724 -6978708 + L1M4b LINE L1 1906 2062 -5272 3 2036 588 307 62 28 chr1 190217752 190218188 -6977244 + L1M4b LINE L1 3299 3749 -3257 3 2036 356 208 170 0 chr1 190218361 190218467 -6976965 + Lx5 LINE L1 6924 7047 -3 3 2036 491 340 43 39 chr1 190218499 190218707 -6976725 + B3 SINE B2 8 216 0 3 2036 180 0 0 0 chr1 190220783 190220803 -6974629 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 2036 324 175 0 0 chr1 190220905 190220968 -6974464 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 2036 289 317 67 35 chr1 190222950 190223222 -6972210 - L1MA8 LINE L1 -4 6308 6021 3 2036 484 316 21 10 chr1 190224873 190225065 -6970367 - Lx8 LINE L1 -705 6768 6575 3 2036 270 354 43 17 chr1 190225162 190225236 -6970196 + L1ME1 LINE L1 5872 5945 -234 3 2036 474 18 0 0 chr1 190225236 190225291 -6970141 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 2036 270 354 43 17 chr1 190225291 190225449 -6969983 + L1ME1 LINE L1 5946 6109 -70 3 2036 568 256 30 30 chr1 190226663 190226796 -6968636 - B4A SINE B4 -125 167 35 3 2036 390 293 63 27 chr1 190227333 190227554 -6967878 + L1MA6 LINE L1 5806 6034 -266 3 2036 2191 68 0 0 chr1 190227554 190227833 -6967599 + L1_Mus1 LINE L1 6232 6510 -57 3 2036 344 189 0 0 chr1 190227830 190227883 -6967549 - Lx8 LINE L1 -370 7103 7051 3 2036 648 306 46 0 chr1 190228038 190228234 -6967198 + B3 SINE B2 3 207 -9 3 2036 31 26 0 0 chr1 190230067 190230105 -6965327 + AT_rich Low_complexity Low_complexity 1 38 0 3 2036 594 266 39 7 chr1 190230148 190230303 -6965129 - RSINE1 SINE B4 -2 163 4 3 2036 225 263 107 33 chr1 190230349 190230471 -6964961 - RLTR13C1 LTR ERVK -478 505 375 3 2036 294 224 69 39 chr1 190231147 190231249 -6964183 - MLT2D LTR ERVL -309 105 1 3 2036 184 329 41 0 chr1 190232086 190232159 -6963273 + L2a LINE L2 3349 3424 -2 3 2036 790 214 0 0 chr1 190234442 190234582 -6960850 + B1_Mur1 SINE Alu 5 144 -5 3 2036 354 226 0 0 chr1 190234996 190235102 -6960330 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 3 2036 468 0 0 0 chr1 190237466 190237518 -6957914 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 2036 29 28 0 0 chr1 190238952 190238988 -6956444 + AT_rich Low_complexity Low_complexity 1 36 0 3 2036 935 240 29 19 chr1 190239148 190239356 -6956076 - B3 SINE B2 -6 210 1 3 2036 207 88 0 0 chr1 190240010 190240044 -6955388 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 2036 297 0 0 0 chr1 190240044 190240076 -6955356 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 2036 284 336 106 0 chr1 190240076 190240180 -6955252 - B4 SINE B4 -23 269 155 3 2036 315 330 19 28 chr1 190240198 190240304 -6955128 - B4A SINE B4 -187 105 1 3 2036 236 338 14 0 chr1 190242267 190242338 -6953094 - tRNA-Ala-GCG tRNA tRNA 0 75 4 3 2036 279 262 0 62 chr1 190242286 190242351 -6953081 - ID4 SINE ID -22 61 1 3 2036 265 341 128 67 chr1 190242486 190242681 -6952751 + LTR78 LTR ERV1 285 491 -813 3 2036 450 0 0 0 chr1 190243232 190243282 -6952150 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 2036 475 289 0 88 chr1 190244663 190244811 -6950621 + ID_B1 SINE B4 85 219 -5 3 2036 368 297 130 19 chr1 190246212 190246428 -6949004 - MLT1H LTR MaLR -293 256 17 3 2036 838 249 11 21 chr1 190246605 190246794 -6948638 - MLT1D LTR MaLR 0 505 319 3 2036 781 326 42 28 chr1 190246899 190247183 -6948249 - B4A SINE B4 -2 290 3 3 2036 411 134 0 0 chr1 190247197 190247279 -6948153 + (ATG)n Simple_repeat Simple_repeat 2 83 0 3 2036 287 310 70 60 chr1 190247288 190247473 -6947959 - B4 SINE B4 -87 205 19 3 2036 435 370 36 0 chr1 190247644 190247836 -6947596 - MLT1D LTR MaLR -302 203 5 3 2036 226 274 56 56 chr1 190248282 190248371 -6947061 - L3 LINE CR1 -218 4271 4183 3 2036 1209 231 76 128 chr1 190249861 190250283 -6945149 - MTD LTR MaLR -14 405 6 3 2036 704 360 25 12 chr1 190250288 190250533 -6944899 + B4A SINE B4 37 284 -8 3 2036 444 19 0 0 chr1 190250835 190250888 -6944544 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 2036 920 295 87 0 chr1 190253165 190253477 -6941955 + MTE2b LTR MaLR 3 341 -38 3 2036 201 250 0 0 chr1 190254023 190254063 -6941369 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 2036 699 310 50 25 chr1 190254065 190254343 -6941089 - B4A SINE B4 -6 286 2 3 2036 28 29 0 0 chr1 190255218 190255253 -6940179 + AT_rich Low_complexity Low_complexity 1 35 0 3 2036 21 0 0 0 chr1 190255332 190255353 -6940079 + AT_rich Low_complexity Low_complexity 1 21 0 3 2036 222 193 35 0 chr1 190256838 190256895 -6938537 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 2036 251 65 0 0 chr1 190257029 190257060 -6938372 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 2036 443 100 0 14 chr1 190257060 190257131 -6938301 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 3 2036 21 0 0 0 chr1 190257530 190257551 -6937881 + AT_rich Low_complexity Low_complexity 1 21 0 3 2036 3866 67 22 0 chr1 190257556 190258017 -6937415 - L1_Mus1 LINE L1 -2 6565 6095 3 2036 402 21 0 0 chr1 190258473 190258520 -6936912 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 2036 558 221 26 72 chr1 190258704 190258894 -6936538 - Lx9 LINE L1 -638 7006 6719 3 2036 599 337 41 134 chr1 190258948 190259507 -6935925 + MER68 LTR ERVL 33 539 -24 3 2036 29 28 0 0 chr1 190260256 190260292 -6935140 + AT_rich Low_complexity Low_complexity 1 36 0 3 2036 23 68 0 0 chr1 190260625 190260669 -6934763 + AT_rich Low_complexity Low_complexity 1 44 0 3 2036 181 286 71 0 chr1 190261102 190261158 -6934274 + MIRm SINE MIR 202 261 -15 3 2036 1107 138 0 27 chr1 190261470 190261656 -6933776 - Lx3_Mus LINE L1 -29 6980 6800 3 2036 604 102 57 0 chr1 190261665 190261753 -6933679 + Lx3_Mus LINE L1 6528 6620 -389 3 2036 220 200 0 24 chr1 190261753 190261794 -6933638 - RSINE1 SINE B4 -124 41 2 3 2036 422 335 50 5 chr1 190263375 190263573 -6931859 - B4A SINE B4 -84 208 2 3 2036 247 104 42 0 chr1 190263781 190263829 -6931603 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 2036 492 309 33 49 chr1 190264035 190264219 -6931213 + B3A SINE B2 2 182 -16 3 2036 234 229 98 27 chr1 190264399 190264511 -6930921 - RLTR15 LTR ERVK -169 190 71 3 2036 435 303 29 53 chr1 190264621 190264827 -6930605 + L1MA4 LINE L1 5732 5932 -368 3 2036 306 115 0 0 chr1 190265705 190265757 -6929675 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 3 2036 203 122 20 0 chr1 190269120 190269169 -6926263 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 2036 315 0 0 0 chr1 190269826 190269861 -6925571 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 2036 369 0 0 0 chr1 190269861 190269901 -6925531 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 2036 259 244 22 34 chr1 190269902 190270020 -6925412 + (CAGA)n Simple_repeat Simple_repeat 1 116 0 4 2036 180 0 0 0 chr1 190270020 190270040 -6925392 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 2036 324 0 0 0 chr1 190270040 190270075 -6925357 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 2036 285 356 131 28 chr1 190270110 190270324 -6925108 - B4A SINE B4 -46 246 11 4 2036 222 37 0 0 chr1 190270348 190270375 -6925057 + (A)n Simple_repeat Simple_repeat 1 27 0 4 2036 833 284 59 5 chr1 190271240 190271442 -6923990 + ID_B1 SINE B4 2 214 -10 4 2036 416 346 50 23 chr1 190272690 190272909 -6922523 - HERV16-int LTR ERVL -2057 2939 2715 4 2036 216 0 0 0 chr1 190273927 190273951 -6921481 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 2036 186 43 0 0 chr1 190275462 190275485 -6919947 + (T)n Simple_repeat Simple_repeat 1 23 0 4 2036 872 217 0 24 chr1 190277557 190277722 -6917710 + B3 SINE B2 56 216 0 4 2036 243 0 0 0 chr1 190280538 190280565 -6914867 + (A)n Simple_repeat Simple_repeat 1 27 0 4 2036 22 0 0 0 chr1 190281878 190281900 -6913532 + AT_rich Low_complexity Low_complexity 1 22 0 4 2036 4604 155 61 69 chr1 190284044 190284060 -6911372 - RMER19B LTR ERVK 0 902 886 4 2036 2739 33 0 0 chr1 190284060 190284365 -6911067 - L1Md_A LINE L1 -2 6580 6276 4 2036 4604 155 61 69 chr1 190284365 190285256 -6910176 - RMER19B LTR ERVK -17 885 3 4 2036 395 289 136 56 chr1 190285629 190285797 -6909635 + B4A SINE B4 1 175 -117 4 2036 405 0 0 0 chr1 190285797 190285842 -6909590 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 2036 395 289 136 56 chr1 190285842 190285886 -6909546 + B4A SINE B4 176 229 -63 4 2036 678 78 0 0 chr1 190286170 190286272 -6909160 + (TC)n Simple_repeat Simple_repeat 2 103 0 4 2036 225 0 0 0 chr1 190286272 190286296 -6909136 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 2036 630 321 84 53 chr1 190287188 190287290 -6908142 + B4 SINE B4 22 116 -176 4 2036 189 0 0 0 chr1 190287290 190287311 -6908121 + (CAG)n Simple_repeat Simple_repeat 1 21 0 4 2036 630 321 84 53 chr1 190287311 190287471 -6907961 + B4 SINE B4 117 291 -1 4 2036 280 134 29 29 chr1 190287474 190287543 -6907889 + (CATA)n Simple_repeat Simple_repeat 2 70 0 4 2036 494 254 111 0 chr1 190288338 190288464 -6906968 + B1_Mur3 SINE Alu 8 147 -2 4 2036 579 159 29 14 chr1 190288917 190289057 -6906375 + GA-rich Low_complexity Low_complexity 3 144 0 4 2036 297 0 0 0 chr1 190289633 190289666 -6905766 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 2036 963 70 0 0 chr1 190289666 190289793 -6905639 + (TA)n Simple_repeat Simple_repeat 1 128 0 4 2036 1056 236 60 174 chr1 190290881 190291312 -6904120 - ORR1C2 LTR MaLR -2 382 1 4 2036 484 264 159 58 chr1 190291533 190291790 -6903642 + B4A SINE B4 3 285 -7 4 2036 315 210 0 0 chr1 190292744 190292844 -6902588 + GA-rich Low_complexity Low_complexity 1 100 0 4 2036 677 271 22 38 chr1 190292883 190293067 -6902365 - B3A SINE B2 -16 182 2 4 2036 288 219 0 0 chr1 190293269 190293351 -6902081 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 2036 868 304 6 97 chr1 190293351 190293671 -6901761 - B4 SINE B4 0 292 2 4 2036 180 0 0 0 chr1 190295187 190295207 -6900225 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 4 2036 25 31 0 0 chr1 190295579 190295611 -6899821 + AT_rich Low_complexity Low_complexity 1 32 0 4 2036 558 317 49 29 chr1 190295611 190295816 -6899616 - B3 SINE B2 -6 210 2 4 2036 383 154 64 12 chr1 190297668 190297839 -6897593 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 2036 501 17 0 0 chr1 190297852 190297910 -6897522 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 2036 1002 211 18 98 chr1 190298256 190298592 -6896840 - RMER17C LTR ERVK -101 309 1 4 2036 258 307 106 41 chr1 190299092 190299262 -6896170 - 7SK RNA RNA -80 251 71 4 2036 2435 189 48 23 chr1 190299441 190299956 -6895476 - RLTR16 LTR ERVK -12 493 1 4 2036 877 187 26 199 chr1 190300404 190300671 -6894761 + RMER19B LTR ERVK 1 221 -681 4 2036 2621 185 69 26 chr1 190300698 190301235 -6894197 + RMER19B LTR ERVK 339 898 -4 4 2036 196 176 0 29 chr1 190302880 190302950 -6892482 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 2036 342 98 0 0 chr1 190303459 190303510 -6891922 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 2036 204 97 0 0 chr1 190303530 190303561 -6891871 + (GGA)n Simple_repeat Simple_repeat 3 33 0 4 2036 236 340 0 11 chr1 190303659 190303754 -6891678 + L1M5 LINE L1 5601 5694 -485 4 2036 288 0 0 0 chr1 190304251 190304283 -6891149 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 2036 260 340 42 94 chr1 190304294 190304602 -6890830 - B4A SINE B4 0 292 1 4 2036 21 0 0 0 chr1 190304683 190304704 -6890728 + AT_rich Low_complexity Low_complexity 1 21 0 4 2036 557 310 42 31 chr1 190305470 190305663 -6889769 - B3A SINE B2 -1 197 3 4 2036 257 286 35 59 chr1 190305801 190305937 -6889495 + B4 SINE B4 1 141 -151 4 2036 21 0 0 0 chr1 190306276 190306297 -6889135 + AT_rich Low_complexity Low_complexity 1 21 0 4 2036 23 86 0 0 chr1 190306493 190306551 -6888881 + AT_rich Low_complexity Low_complexity 1 58 0 4 2036 816 273 28 14 chr1 190306643 190306855 -6888577 - B3 SINE B2 -1 215 1 4 2036 224 247 12 61 chr1 190307634 190307716 -6887716 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 4 2036 262 296 0 11 chr1 190307725 190307906 -6887526 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 2036 290 352 0 0 chr1 190307921 190308012 -6887420 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 2036 363 171 0 0 chr1 190308023 190308099 -6887333 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 2036 342 283 141 58 chr1 190308192 190308376 -6887056 - B4 SINE B4 -9 215 2 4 2036 257 0 0 29 chr1 190308438 190308472 -6886960 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 4 2036 266 398 13 18 chr1 190308784 190309009 -6886423 + L3b LINE CR1 22 245 -237 4 2036 1169 195 127 46 chr1 190309960 190310267 -6885165 - IAPEY3_LTR LTR ERVK 0 332 1 4 2036 234 344 16 31 chr1 190312010 190312139 -6883293 + ORR1E LTR MaLR 11 137 -222 4 2036 268 212 29 17 chr1 190314014 190314197 -6881235 + (CATA)n Simple_repeat Simple_repeat 1 185 0 4 2036 224 230 22 22 chr1 190314208 190314297 -6881135 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 2036 201 74 0 0 chr1 190314298 190314325 -6881107 + (CATA)n Simple_repeat Simple_repeat 2 28 0 4 2036 269 275 0 0 chr1 190314391 190314471 -6880961 + A-rich Low_complexity Low_complexity 1 80 0 4 2036 462 18 0 0 chr1 190314598 190314653 -6880779 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 2036 315 71 0 0 chr1 190314653 190314695 -6880737 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 2036 672 294 121 4 chr1 190315739 190316012 -6879420 - MLT1C LTR MaLR -162 305 1 4 2037 228 141 13 66 chr1 190317229 190317290 -6878142 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 4 2037 560 248 78 0 chr1 190317290 190317419 -6878013 - B1F1 SINE Alu -9 140 2 4 2037 228 141 13 66 chr1 190317419 190317433 -6877999 + (TTTA)n Simple_repeat Simple_repeat 4 15 0 4 2037 369 0 0 0 chr1 190317473 190317514 -6877918 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 2037 455 308 55 14 chr1 190317518 190317663 -6877769 - B3A SINE B2 -44 154 4 4 2037 442 333 24 0 chr1 190317675 190317801 -6877631 - ID_B1 SINE B4 -9 215 87 4 2037 252 0 0 0 chr1 190320376 190320404 -6875028 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 2037 262 281 150 78 chr1 190320816 190321009 -6874423 + MIR SINE MIR 30 236 -26 4 2037 598 325 63 19 chr1 190321378 190321585 -6873847 + B4 SINE B4 3 218 -74 4 2037 210 71 0 0 chr1 190323058 190323086 -6872346 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 2037 447 284 131 93 chr1 190323098 190323366 -6872066 - B4A SINE B4 0 292 15 4 2037 800 269 117 26 chr1 190324055 190324319 -6871113 - B4 SINE B4 -1 291 4 4 2037 530 194 10 1 chr1 190324546 190324653 -6870779 - Lx4B LINE L1 -699 6277 6171 4 2037 309 221 64 23 chr1 190324651 190324793 -6870639 + Lx2B LINE L1 6881 7040 -18 4 2037 234 0 0 0 chr1 190325717 190325743 -6869689 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 2037 279 122 0 0 chr1 190326151 190326200 -6869232 + (GTTTG)n Simple_repeat Simple_repeat 1 49 0 4 2037 292 134 255 49 chr1 190327130 190327232 -6868200 - ORR1D2 LTR MaLR -29 341 219 4 2037 645 330 28 38 chr1 190327777 190327988 -6867444 + ORR1D2 LTR MaLR 1 209 -161 4 2037 466 283 0 74 chr1 190327963 190328069 -6867363 - B3A SINE B2 -60 138 41 4 2037 936 242 292 21 chr1 190328069 190328487 -6866945 - MT2A LTR ERVL -2 531 1 4 2037 466 283 0 74 chr1 190328487 190328529 -6866903 - B3A SINE B2 -158 40 1 4 2037 5232 75 21 34 chr1 190330074 190330834 -6864598 - Lx3A LINE L1 -634 5252 4503 4 2037 8680 97 37 27 chr1 190330830 190332593 -6862839 + Lx3A LINE L1 5205 6979 -2 4 2037 28 29 0 0 chr1 190332596 190332631 -6862801 + AT_rich Low_complexity Low_complexity 1 35 0 4 2037 336 170 19 9 chr1 190334017 190334124 -6861308 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 2037 306 189 0 0 chr1 190334124 190334177 -6861255 + HAL1-3A_ME LINE L1 1975 2027 -831 4 2037 386 209 8 0 chr1 190334207 190334336 -6861096 + (CA)n Simple_repeat Simple_repeat 2 131 0 4 2037 542 146 29 12 chr1 190334357 190334530 -6860902 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 2037 186 191 0 0 chr1 190334541 190334583 -6860849 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 2037 669 73 0 0 chr1 190334735 190334831 -6860601 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 2037 459 335 120 39 chr1 190335599 190335857 -6859575 - B4A SINE B4 -2 290 12 4 2037 2741 218 108 42 chr1 190336880 190337715 -6857717 - RMER19B LTR ERVK -12 890 1 4 2037 2025 200 120 144 chr1 190338464 190339090 -6856342 + RMER19C LTR ERVK 1 611 0 4 2037 23 0 0 0 chr1 190339232 190339255 -6856177 + AT_rich Low_complexity Low_complexity 1 23 0 4 2037 758 289 64 24 chr1 190339626 190339956 -6855476 + ORR1E LTR MaLR 10 375 -4 4 2037 2543 77 3 6 chr1 190340985 190341313 -6854119 - ORR1A2 LTR MaLR 0 327 1 4 2037 360 0 0 0 chr1 190341377 190341417 -6854015 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 2037 364 220 65 11 chr1 190341775 190341867 -6853565 - L2a LINE L2 -3 3423 3327 5 2037 924 101 0 0 chr1 190341947 190342085 -6853347 + (TAGA)n Simple_repeat Simple_repeat 1 138 0 5 2037 1785 156 44 15 chr1 190342190 190342529 -6852903 + ORR1C1 LTR MaLR 26 374 -4 5 2037 435 19 0 0 chr1 190343221 190343273 -6852159 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 2037 303 175 0 0 chr1 190343273 190343330 -6852102 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 5 2037 344 282 0 26 chr1 190343338 190343451 -6851981 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 2037 370 308 17 0 chr1 190344097 190344217 -6851215 + Lx9 LINE L1 6860 6981 -663 5 2037 21 36 0 0 chr1 190344334 190344362 -6851070 + AT_rich Low_complexity Low_complexity 1 28 0 5 2037 1116 236 58 83 chr1 190345903 190346300 -6849132 + MTD LTR MaLR 18 404 -15 5 2037 731 154 21 0 chr1 190347479 190347622 -6847810 - URR1A DNA MER1_type 0 226 81 5 2037 504 244 16 16 chr1 190347820 190347949 -6847483 + B1F SINE Alu 20 148 -1 5 2037 185 304 128 0 chr1 190349483 190349585 -6845847 - MIR SINE MIR -117 145 31 5 2037 227 214 0 0 chr1 190349611 190349653 -6845779 + B1F SINE Alu 40 81 -68 5 2037 601 236 25 19 chr1 190350694 190350854 -6844578 + B4A SINE B4 132 292 0 5 2037 250 247 11 11 chr1 190350884 190350978 -6844454 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 2037 188 263 13 0 chr1 190351035 190351111 -6844321 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 2037 702 205 48 48 chr1 190352920 190353130 -6842302 + B3 SINE B2 7 216 0 5 2037 773 234 64 15 chr1 190354438 190354642 -6840790 - B3 SINE B2 -1 215 2 5 2037 270 73 0 0 chr1 190355489 190355530 -6839902 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 5 2037 348 286 0 0 chr1 190355672 190355812 -6839620 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 2037 180 0 0 0 chr1 190356083 190356103 -6839329 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 2037 187 266 30 30 chr1 190356270 190356336 -6839096 - L2a LINE L2 -20 3406 3341 5 2037 180 0 0 0 chr1 190356727 190356747 -6838685 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 2037 866 274 55 110 chr1 190357162 190357543 -6837889 - MTE2a LTR MaLR -17 362 3 5 2037 238 152 34 0 chr1 190357619 190357678 -6837754 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 2037 480 244 88 19 chr1 190357979 190358138 -6837294 + B2_Mm2 SINE B2 1 170 -25 5 2037 554 98 44 22 chr1 190358141 190358277 -6837155 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 5 2037 1652 233 68 3 chr1 190358355 190358725 -6836707 - MTD LTR MaLR -10 409 16 5 2037 526 302 100 7 chr1 190358846 190358996 -6836436 + RSINE1 SINE B4 2 165 0 5 2037 21 0 0 0 chr1 190358996 190359017 -6836415 + AT_rich Low_complexity Low_complexity 1 21 0 5 2037 264 100 0 0 chr1 190359225 190359265 -6836167 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 2037 207 316 44 0 chr1 190359290 190359426 -6836006 + (TG)n Simple_repeat Simple_repeat 1 142 0 5 2037 279 0 0 0 chr1 190359450 190359481 -6835951 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 2037 668 282 27 74 chr1 190359539 190359838 -6835594 - B4A SINE B4 -6 286 2 5 2037 249 57 0 0 chr1 190361340 190361375 -6834057 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 2037 1101 207 14 0 chr1 190362992 190363205 -6832227 - B3 SINE B2 0 216 1 5 2037 432 0 0 0 chr1 190363873 190363921 -6831511 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 2037 201 234 0 0 chr1 190364521 190364585 -6830847 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 2037 2631 212 60 22 chr1 190364588 190365176 -6830256 - RMER19C LTR ERVK -1 610 1 5 2037 324 288 182 7 chr1 190365245 190365399 -6830033 - B4A SINE B4 -4 288 108 5 2037 192 40 0 0 chr1 190366897 190366922 -6828510 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 5 2037 425 166 40 177 chr1 190366965 190366989 -6828443 - B2_Mm2 SINE B2 -2 193 173 5 2037 3242 19 8 0 chr1 190366989 190367359 -6828073 - L1Md_F3 LINE L1 -1 6583 6211 5 2037 603 216 92 12 chr1 190367359 190367532 -6827900 - B3 SINE B2 -7 209 23 5 2037 22 0 0 0 chr1 190367779 190367801 -6827631 + AT_rich Low_complexity Low_complexity 1 22 0 5 2037 287 210 24 24 chr1 190368128 190368211 -6827221 + PB1D10 SINE Alu 35 117 0 5 2037 1234 28 7 0 chr1 190368305 190368449 -6826983 - B1_Mm SINE Alu 0 147 3 5 2037 363 105 0 0 chr1 190369407 190369464 -6825968 + (CCA)n Simple_repeat Simple_repeat 1 57 0 5 2037 365 297 18 9 chr1 190370745 190370857 -6824575 - B4 SINE B4 -74 218 106 5 2037 342 0 0 0 chr1 190371018 190371056 -6824376 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 2037 423 0 0 0 chr1 190371056 190371102 -6824330 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 2037 385 337 24 24 chr1 190371102 190371272 -6824160 - Lx8 LINE L1 -148 7325 7156 5 2037 2017 291 90 51 chr1 190371281 190372091 -6823341 - Lx8 LINE L1 -264 7209 6368 5 2037 231 337 11 11 chr1 190372093 190372183 -6823249 - B4 SINE B4 -198 94 5 5 2037 2958 102 2 10 chr1 190374939 190375347 -6820085 - MTB_Mm LTR MaLR -2 405 1 5 2037 399 329 29 7 chr1 190377308 190377446 -6817986 + B1F1 SINE Alu 8 148 -1 5 2037 396 0 0 0 chr1 190377460 190377504 -6817928 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 2037 210 250 0 0 chr1 190377702 190377774 -6817658 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 2037 689 41 21 0 chr1 190378356 190378453 -6816979 + B1_Mm SINE Alu 47 145 -2 5 2037 207 0 0 0 chr1 190378453 190378476 -6816956 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 2037 399 239 23 0 chr1 190378493 190378581 -6816851 - RSINE1 SINE B4 -73 92 3 5 2037 960 289 37 13 chr1 190379155 190379453 -6815979 + MTEb LTR MaLR 69 373 -6 5 2037 1218 134 113 5 chr1 190380331 190380534 -6814898 + URR1A DNA MER1_type 2 226 0 5 2037 339 25 0 0 chr1 190380978 190381018 -6814414 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 2037 707 205 11 128 chr1 190381122 190381473 -6813959 + ORR1D1 LTR MaLR 1 290 -84 5 2037 366 233 27 0 chr1 190381475 190381548 -6813884 - B4A SINE B4 -216 76 2 5 2037 210 37 0 0 chr1 190381847 190381874 -6813558 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 5 2037 183 42 0 0 chr1 190382136 190382160 -6813272 + (T)n Simple_repeat Simple_repeat 1 24 0 5 2037 356 291 63 36 chr1 190382929 190383158 -6812274 + ORR1E LTR MaLR 25 258 -112 5 2037 28 0 0 0 chr1 190385242 190385270 -6810162 + AT_rich Low_complexity Low_complexity 1 28 0 5 2037 982 289 82 32 chr1 190385323 190385859 -6809573 - Lx9 LINE L1 -19 7625 7063 5 2037 1736 211 38 11 chr1 190386442 190386810 -6808622 - ORR1C1 LTR MaLR 0 378 1 5 2037 3081 140 53 57 chr1 190386996 190387615 -6807817 + RLTR26 LTR ERVK 26 642 0 5 2037 593 274 122 44 chr1 190388099 190388335 -6807097 + L1_Mur3 LINE L1 5194 5442 -438 5 2037 519 60 0 0 chr1 190388335 190388402 -6807030 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 2037 593 274 122 44 chr1 190388402 190388508 -6806924 + L1_Mur3 LINE L1 5443 5562 -318 5 2037 339 65 0 0 chr1 190389986 190390032 -6805400 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 2037 350 266 64 0 chr1 190390987 190391081 -6804351 - Lx8 LINE L1 -478 6995 6896 5 2037 725 177 3 11 chr1 190391690 190392059 -6803373 + GA-rich Low_complexity Low_complexity 1 365 0 5 2037 459 35 0 0 chr1 190392891 190392948 -6802484 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 2037 665 246 34 119 chr1 190392955 190393223 -6802209 - B4 SINE B4 -12 280 36 5 2037 488 364 21 25 chr1 190394114 190394356 -6801076 + MTD LTR MaLR 30 270 -149 5 2037 485 279 7 7 chr1 190394423 190394560 -6800872 + MTD LTR MaLR 269 405 -14 5 2037 780 261 119 55 chr1 190395757 190396101 -6799331 + MTD LTR MaLR 18 383 -36 5 2037 723 292 50 39 chr1 190396779 190397060 -6798372 + B4A SINE B4 1 284 -8 5 2037 415 261 223 0 chr1 190397102 190397232 -6798200 + B3A SINE B2 2 160 -38 5 2037 387 0 0 0 chr1 190398325 190398368 -6797064 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 2037 218 267 17 0 chr1 190398676 190398736 -6796696 + B1_Mus1 SINE Alu 8 68 -80 5 2037 646 305 16 16 chr1 190398684 190398877 -6796555 + B4 SINE B4 100 292 0 5 2037 414 246 0 0 chr1 190398918 190399085 -6796347 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 2037 779 144 6 34 chr1 190400967 190401146 -6794286 + CT-rich Low_complexity Low_complexity 5 178 0 5 2037 207 149 43 0 chr1 190401693 190401740 -6793692 + T-rich Low_complexity Low_complexity 3 51 0 5 2037 198 0 0 0 chr1 190403171 190403193 -6792239 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 5 2037 381 187 0 0 chr1 190403190 190403265 -6792167 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 5 2037 272 330 174 0 chr1 190403355 190403470 -6791962 - MIR SINE MIR -89 173 39 5 2037 648 281 89 92 chr1 190403528 190403853 -6791579 + MTEb LTR MaLR 3 326 -53 5 2037 989 138 6 6 chr1 190403856 190404024 -6791408 - ORR1B1 LTR MaLR -5 389 222 5 2037 5427 35 23 0 chr1 190404346 190404998 -6790434 - L1Md_F3 LINE L1 -3 6581 5915 5 2037 450 302 68 19 chr1 190405169 190405331 -6790101 + ID_B1 SINE B4 52 221 -3 5 2037 958 329 119 19 chr1 190406071 190406694 -6788738 - Lx8 LINE L1 -130 7343 6659 5 2037 392 274 40 109 chr1 190406704 190406905 -6788527 + L1_Rod LINE L1 2220 2406 -3441 5 2037 381 303 162 7 chr1 190407081 190407383 -6788049 - MLT1B LTR MaLR 0 390 42 5 2037 1044 242 0 0 chr1 190407485 190407696 -6787736 - B3 SINE B2 -5 211 1 5 2037 298 22 21 42 chr1 190408111 190408159 -6787273 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 2037 703 222 11 14 chr1 190409667 190409840 -6785592 - ORR1D2 LTR MaLR 0 421 195 5 2037 2090 138 74 6 chr1 190409866 190409984 -6785448 - Lx4A LINE L1 0 7058 6918 6 2037 441 0 0 0 chr1 190409984 190410033 -6785399 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 2037 2090 138 74 6 chr1 190410033 190410265 -6785167 - Lx4A LINE L1 -141 6917 6684 6 2037 251 320 111 33 chr1 190410737 190410918 -6784514 - B4 SINE B4 -96 196 2 6 2037 553 141 19 5 chr1 190412352 190412550 -6782882 + CT-rich Low_complexity Low_complexity 1 200 0 6 2037 598 308 47 20 chr1 190412585 190412641 -6782791 - B4A SINE B4 -28 264 207 6 2037 729 62 47 0 chr1 190412641 190412770 -6782662 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 6 2037 598 308 47 20 chr1 190412770 190412968 -6782464 - B4A SINE B4 -86 206 4 6 2037 503 314 128 27 chr1 190413701 190414107 -6781325 - MLT1C LTR MaLR 0 467 21 6 2037 623 331 85 32 chr1 190414922 190415431 -6780001 - Lx9 LINE L1 0 7473 6953 6 2037 326 373 61 26 chr1 190416668 190416899 -6778533 - MLT1J1 LTR MaLR -129 315 77 6 2037 264 276 181 60 chr1 190417286 190417364 -6778068 + Tigger7 DNA MER2_type 2283 2390 -101 6 2037 324 0 0 0 chr1 190417364 190417400 -6778032 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 2037 471 35 0 0 chr1 190417400 190417456 -6777976 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 2037 264 276 181 60 chr1 190417456 190417542 -6777890 + Tigger7 DNA MER2_type 2391 2467 -24 6 2037 22 56 0 0 chr1 190417923 190417959 -6777473 + AT_rich Low_complexity Low_complexity 1 36 0 6 2037 1107 72 0 7 chr1 190418190 190418330 -6777102 + B1_Mus2 SINE Alu 1 139 -8 6 2037 633 27 0 0 chr1 190418341 190418416 -6777016 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 6 2037 782 250 5 58 chr1 190418645 190418853 -6776579 + B3A SINE B2 2 198 0 6 2037 348 297 192 23 chr1 190420928 190421193 -6774239 - MER44A DNA MER2_type -23 316 7 6 2037 23 33 0 0 chr1 190421210 190421240 -6774192 + AT_rich Low_complexity Low_complexity 1 30 0 6 2037 656 224 6 0 chr1 190421780 190421950 -6773482 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 2037 221 171 0 0 chr1 190421953 190421988 -6773444 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 6 2037 856 202 21 6 chr1 190421995 190422180 -6773252 + B3 SINE B2 2 198 0 6 2037 21 57 0 0 chr1 190422347 190422382 -6773050 + AT_rich Low_complexity Low_complexity 1 35 0 6 2037 293 344 59 7 chr1 190422564 190422716 -6772716 + B4A SINE B4 2 161 -131 6 2037 310 222 150 44 chr1 190422879 190422992 -6772440 + B4A SINE B4 145 269 -23 6 2037 423 56 0 0 chr1 190423416 190423470 -6771962 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 2037 339 25 0 0 chr1 190423470 190423510 -6771922 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 2037 544 155 41 18 chr1 190424922 190425093 -6770339 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 6 2037 812 133 41 12 chr1 190425112 190425441 -6769991 + (TAGA)n Simple_repeat Simple_repeat 1 338 0 6 2037 667 150 29 0 chr1 190425454 190425627 -6769805 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 6 2037 697 251 11 55 chr1 190426408 190426589 -6768843 + B3 SINE B2 21 193 -23 6 2037 181 197 30 0 chr1 190426697 190426763 -6768669 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 2037 398 281 38 32 chr1 190427527 190427685 -6767747 - LTR88b LTR Gypsy? -11 826 668 6 2037 1597 242 83 56 chr1 190428641 190429180 -6766252 - RMER15 LTR ERVL 0 575 22 6 2037 1049 244 86 16 chr1 190429532 190429836 -6765596 + MTEa LTR MaLR 1 325 -54 6 2037 252 236 0 0 chr1 190429836 190429925 -6765507 + CT-rich Low_complexity Low_complexity 2 90 0 6 2037 815 128 0 53 chr1 190429946 190430136 -6765296 + CT-rich Low_complexity Low_complexity 1 180 0 6 2037 213 180 0 0 chr1 190430149 190430199 -6765233 + CT-rich Low_complexity Low_complexity 4 53 0 6 2037 281 109 0 0 chr1 190430215 190430261 -6765171 + MTEa LTR MaLR 314 359 -20 6 2037 366 244 20 7 chr1 190430334 190430434 -6764998 - PB1D7 SINE Alu -6 111 6 6 2037 273 222 0 0 chr1 190430529 190430592 -6764840 + (CCCTG)n Simple_repeat Simple_repeat 2 64 0 6 2037 315 0 0 0 chr1 190430687 190430722 -6764710 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 2037 1026 84 0 0 chr1 190430722 190430864 -6764568 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 6 2037 22 35 0 0 chr1 190431139 190431168 -6764264 + AT_rich Low_complexity Low_complexity 1 29 0 6 2037 889 308 14 3 chr1 190431579 190431866 -6763566 - B4A SINE B4 0 292 3 6 2037 4540 10 0 0 chr1 190432215 190432708 -6762724 - MT2_Mm LTR ERVL 0 493 1 6 2037 321 0 0 0 chr1 190432708 190432746 -6762686 - MERVL-int LTR ERVL 0 5485 5448 6 2037 331 191 46 35 chr1 190432746 190432833 -6762599 - ORR1A3-int LTR MaLR -1323 640 553 6 2037 48963 15 0 0 chr1 190432833 190438192 -6757240 - MERVL-int LTR ERVL -125 5360 1 6 2037 4531 10 0 0 chr1 190438192 190438684 -6756748 - MT2_Mm LTR ERVL 0 493 2 6 2037 197 361 18 27 chr1 190439166 190439277 -6756155 - L2b LINE L2 -188 3187 3078 6 2037 388 239 37 126 chr1 190439540 190439866 -6755566 + RLTR15 LTR ERVK 27 323 -36 6 2037 354 308 226 0 chr1 190440042 190440188 -6755244 + B3A SINE B2 2 180 -18 6 2037 243 0 0 0 chr1 190440197 190440224 -6755208 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 2037 30 0 0 0 chr1 190440300 190440330 -6755102 + AT_rich Low_complexity Low_complexity 1 30 0 6 2037 395 170 0 10 chr1 190441376 190441477 -6753955 + GA-rich Low_complexity Low_complexity 2 101 0 6 2037 404 233 0 8 chr1 190442681 190442802 -6752630 + CT-rich Low_complexity Low_complexity 1 120 0 6 2037 839 273 127 9 chr1 190444330 190444746 -6750686 - MTE-int LTR MaLR -1115 465 1 6 2037 509 344 61 0 chr1 190444843 190445055 -6750377 - ORR1E LTR MaLR -134 225 1 6 2037 930 256 181 49 chr1 190445888 190446352 -6749080 - RMER1B Other Other -500 566 77 6 2037 264 59 0 0 chr1 190446943 190446977 -6748455 + (TTC)n Simple_repeat Simple_repeat 1 34 0 6 2037 1065 51 73 0 chr1 190446978 190447115 -6748317 - B1_Mus1 SINE Alu 0 148 2 6 254 2108 169 13 5 chr1 190447302 190447677 -6747755 + ORR1C1 LTR MaLR 1 378 0 6 2038 232 274 0 0 chr1 190448498 190448560 -6746872 - MTEb LTR MaLR 0 379 318 6 2038 252 100 0 0 chr1 190448599 190448639 -6746793 + (TAAAA)n Simple_repeat Simple_repeat 4 43 0 6 2038 405 0 0 0 chr1 190448696 190448741 -6746691 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 2038 557 225 11 9 chr1 190448835 190448972 -6746460 + MTC LTR MaLR 280 421 0 6 2038 234 0 0 0 chr1 190450945 190450971 -6744461 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 2038 511 246 23 0 chr1 190450971 190451101 -6744331 - B3 SINE B2 -50 166 34 6 2038 513 283 114 28 chr1 190451821 190452075 -6743357 + B4 SINE B4 2 277 -15 6 2038 486 108 0 0 chr1 190452232 190452306 -6743126 + (CATA)n Simple_repeat Simple_repeat 2 75 0 6 2038 579 301 93 37 chr1 190455058 190455327 -6740105 - B4A SINE B4 -3 289 6 6 2038 267 382 0 0 chr1 190456778 190456854 -6738578 - B4 SINE B4 -2 290 215 6 2038 283 121 35 0 chr1 190456889 190456947 -6738485 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 2038 257 185 19 0 chr1 190459078 190459132 -6736300 + B3 SINE B2 1 55 -161 6 2038 490 289 24 14 chr1 190459586 190459873 -6735559 - MTE2b LTR MaLR 0 379 58 6 2038 466 276 162 25 chr1 190460154 190460402 -6735030 - MTE2b LTR MaLR -104 275 10 6 2038 680 282 51 21 chr1 190460487 190460750 -6734682 - MTD LTR MaLR -146 273 1 6 2038 2787 48 0 11 chr1 190461018 190461373 -6734059 - L1Md_F2 LINE L1 0 6582 6232 6 2038 210 37 0 0 chr1 190461878 190461905 -6733527 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 2038 317 162 0 14 chr1 190462324 190462393 -6733039 + CT-rich Low_complexity Low_complexity 2 69 0 6 2038 441 0 0 0 chr1 190462421 190462470 -6732962 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 2038 234 0 0 0 chr1 190465255 190465281 -6730151 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 2038 393 22 0 0 chr1 190466553 190466599 -6728833 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 2038 7079 36 2 0 chr1 190468272 190469100 -6726332 + L1Md_F2 LINE L1 5660 6489 -93 6 2038 3509 25 2 0 chr1 190469100 190469495 -6725937 - MTA_Mm LTR MaLR 0 396 1 6 2038 3497 29 0 0 chr1 190469495 190469943 -6725489 - MTA_Mm-int LTR MaLR 0 1098 651 6 2038 1262 126 16 0 chr1 190470517 190470700 -6724732 - B2_Mm2 SINE B2 -9 186 1 6 2038 392 279 47 7 chr1 190470927 190471075 -6724357 + MIR SINE MIR 49 202 -60 6 2038 2784 60 10 0 chr1 190471091 190471475 -6723957 + RLTR10 LTR ERVK 1 388 -2 6 2038 1897 66 4 0 chr1 190471516 190471774 -6723658 - RLTR10 LTR ERVK -131 259 1 6 2038 263 167 0 32 chr1 190473339 190473401 -6722031 + GA-rich Low_complexity Low_complexity 2 61 0 6 2038 1241 160 61 5 chr1 190474294 190474507 -6720925 + URR1B DNA MER1_type 1 225 0 6 2038 676 259 0 11 chr1 190474509 190474685 -6720747 + B3A SINE B2 25 198 0 6 2038 207 214 0 0 chr1 190475050 190475092 -6720340 + A-rich Low_complexity Low_complexity 1 42 0 6 2038 4501 64 19 8 chr1 190475533 190476119 -6719313 - L1Md_F2 LINE L1 0 6582 5991 6 2038 563 305 120 30 chr1 190476281 190476548 -6718884 + B4 SINE B4 2 292 0 6 2038 809 325 39 88 chr1 190476967 190477513 -6717919 - RMER5 LTR ERV1 0 534 16 6 2038 188 203 12 48 chr1 190477578 190477639 -6717793 + GA-rich Low_complexity Low_complexity 2 61 0 6 2038 885 15 16 82 chr1 190477639 190477821 -6717611 + (GGGAGA)n Simple_repeat Simple_repeat 1 179 -171 6 2038 188 203 12 48 chr1 190477821 190477842 -6717590 + polypurine Low_complexity Low_complexity 62 81 0 6 2038 885 15 16 82 chr1 190477842 190478014 -6717418 + (GGGAGA)n Simple_repeat Simple_repeat 180 350 0 6 2038 292 296 153 33 chr1 190478891 190479132 -6716300 + MER44A DNA MER2_type 30 299 -40 6 2038 1396 57 0 0 chr1 190479314 190479489 -6715943 + L1_Mm LINE L1 4025 4199 -1684 6 2038 194 91 30 0 chr1 190481530 190481563 -6713869 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 6 2038 402 173 0 0 chr1 190487446 190487550 -6707882 + (CATA)n Simple_repeat Simple_repeat 2 105 0 6 2038 761 141 11 11 chr1 190487566 190487746 -6707686 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 2038 294 195 0 0 chr1 190487753 190487840 -6707592 + (CATA)n Simple_repeat Simple_repeat 2 88 0 6 2038 312 308 57 19 chr1 190490195 190490301 -6705131 - B4 SINE B4 -5 287 178 6 2038 353 268 67 26 chr1 190490383 190490538 -6704894 - B4 SINE B4 -7 158 2 6 2038 1473 58 5 10 chr1 190492048 190492240 -6703192 - B2_Mm2 SINE B2 -4 191 1 6 2038 304 284 19 10 chr1 190493663 190493743 -6701689 + C-rich Low_complexity Low_complexity 24 104 0 6 2038 348 326 35 0 chr1 190493743 190493887 -6701545 - B1F1 SINE Alu 0 149 1 7 2038 304 284 19 10 chr1 190493887 190493909 -6701523 + C-rich Low_complexity Low_complexity 2 23 0 7 2038 226 322 69 14 chr1 190494145 190494290 -6701142 + MLT1F2 LTR MaLR 36 188 -372 7 2038 327 49 0 0 chr1 190495436 190495477 -6699955 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 2038 192 77 0 0 chr1 190495710 190495736 -6699696 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 7 2038 422 366 41 0 chr1 190496096 190496290 -6699142 + ID_B1 SINE B4 21 222 -2 7 2038 186 193 0 0 chr1 190497597 190497654 -6697778 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 7 2038 354 223 10 69 chr1 190497767 190497868 -6697564 - B3 SINE B2 0 216 122 7 2038 3028 44 0 0 chr1 190497870 190498237 -6697195 + L1Md_A LINE L1 6216 6582 0 7 2038 454 321 5 30 chr1 190498312 190498514 -6696918 + B3A SINE B2 1 197 -1 7 2038 859 198 122 5 chr1 190498974 190499162 -6696270 + B3 SINE B2 1 210 -6 7 2038 32 43 0 0 chr1 190501128 190501174 -6694258 + AT_rich Low_complexity Low_complexity 1 46 0 1 2038 180 0 0 0 chr1 190502468 190502488 -6692944 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 2038 455 291 45 52 chr1 190504236 190504526 -6690906 + B4A SINE B4 2 289 -3 3 2038 690 130 46 12 chr1 190504551 190504791 -6690641 + (CA)n Simple_repeat Simple_repeat 1 247 0 4 2038 463 137 62 6 chr1 190504807 190504969 -6690463 + (CA)n Simple_repeat Simple_repeat 1 171 0 4 2038 228 345 19 76 chr1 190505063 190505220 -6690212 + L2c LINE L2 3240 3387 0 5 2038 407 323 34 34 chr1 190505244 190505452 -6689980 + B4A SINE B4 1 208 -84 6 2038 210 316 37 84 chr1 190505404 190505511 -6689921 + B3A SINE B2 78 179 -19 7 2038 505 291 58 32 chr1 190506597 190506753 -6688679 + B3A SINE B2 3 162 -36 8 2038 616 287 136 0 chr1 190506855 190507106 -6688326 + B4A SINE B4 5 289 -3 9 2038 195 310 40 72 chr1 190508509 190508634 -6686798 + MIRb SINE MIR 31 151 -117 1 2038 843 269 14 5 chr1 190508825 190509038 -6686394 - B3 SINE B2 0 216 2 1 2038 254 321 35 121 chr1 190509225 190509540 -6685892 + B4 SINE B4 1 288 -4 1 2038 207 0 0 0 chr1 190510082 190510105 -6685327 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 2038 556 312 17 0 chr1 190510352 190510525 -6684907 + B3A SINE B2 7 182 -16 1 2038 261 0 0 0 chr1 190510551 190510580 -6684852 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 2038 195 42 0 0 chr1 190512135 190512159 -6683273 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 2038 967 308 132 15 chr1 190513713 190514191 -6681241 + Tigger7 DNA MER2_type 8 541 -1950 1 2038 347 249 139 39 chr1 190514619 190514873 -6680559 - RMER20B LTR ERVK -216 411 133 1 2038 1895 177 21 21 chr1 190516064 190516450 -6678982 - ORR1B1 LTR MaLR -8 386 1 1 2038 344 363 23 6 chr1 190516612 190516888 -6678544 + (TG)n Simple_repeat Simple_repeat 1 280 0 2 2038 305 266 34 45 chr1 190516841 190517018 -6678414 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 2 2038 327 318 28 17 chr1 190517053 190517229 -6678203 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2 2038 302 357 23 6 chr1 190517263 190517435 -6677997 + (TG)n Simple_repeat Simple_repeat 1 175 0 2 2038 345 341 30 8 chr1 190517475 190517608 -6677824 - B4A SINE B4 -4 288 153 2 2038 463 300 30 24 chr1 190519151 190519315 -6676117 + RSINE1 SINE B4 1 165 0 2 2038 24 53 0 0 chr1 190519351 190519389 -6676043 + AT_rich Low_complexity Low_complexity 1 38 0 2 2038 459 344 69 0 chr1 190520125 190520343 -6675089 + B4A SINE B4 1 233 -59 2 2038 7775 73 41 7 chr1 190520343 190521988 -6673444 + L1VL2 LINE L1 321 2029 -1586 2 2038 1739 275 23 90 chr1 190522106 190522938 -6672494 - L1_Rod LINE L1 -1270 4577 3802 2 2038 261 181 13 53 chr1 190523084 190523160 -6672272 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 3 2038 27 29 0 0 chr1 190523167 190523201 -6672231 + AT_rich Low_complexity Low_complexity 1 34 0 3 2038 213 135 26 26 chr1 190523891 190523967 -6671465 + (TTTG)n Simple_repeat Simple_repeat 2 77 0 3 2038 1214 144 21 0 chr1 190524665 190524852 -6670580 - B2_Mm2 SINE B2 -2 193 3 3 2038 215 191 24 0 chr1 190524975 190525017 -6670415 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 3 2038 3556 223 52 72 chr1 190525020 190525974 -6669458 - Lx6 LINE L1 -5 7455 6521 3 2038 433 307 78 18 chr1 190526440 190526606 -6668826 - MLT1A0 LTR MaLR -18 347 172 3 2038 29 78 0 0 chr1 190527074 190527138 -6668294 + AT_rich Low_complexity Low_complexity 1 64 0 3 2038 21 0 0 0 chr1 190528304 190528325 -6667107 + AT_rich Low_complexity Low_complexity 1 21 0 3 2038 430 104 0 38 chr1 190528365 190528445 -6666987 + (TATG)n Simple_repeat Simple_repeat 1 77 0 3 2038 232 294 17 60 chr1 190528520 190528636 -6666796 - PB1D7 SINE Alu -3 117 7 4 2038 485 308 17 17 chr1 190528551 190528726 -6666706 - B4A SINE B4 -117 175 1 4 2038 501 272 8 0 chr1 190529383 190529508 -6665924 - RSINE1 SINE B4 -38 127 2 4 2038 663 286 22 6 chr1 190530696 190530875 -6664557 + B3A SINE B2 1 182 -16 4 2038 22 70 0 0 chr1 190530932 190530975 -6664457 + AT_rich Low_complexity Low_complexity 1 43 0 4 2038 25 90 0 0 chr1 190531342 190531409 -6664023 + AT_rich Low_complexity Low_complexity 1 67 0 4 2038 202 85 49 33 chr1 190531465 190531526 -6663906 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 2038 732 209 108 21 chr1 190532145 190532331 -6663101 + B3 SINE B2 5 206 -10 4 2038 196 339 46 30 chr1 190532486 190532617 -6662815 + MIRb SINE MIR 11 143 -125 4 2038 754 269 11 11 chr1 190533626 190533810 -6661622 - Lx8 LINE L1 -180 7293 7110 4 2038 547 280 91 51 chr1 190533814 190534089 -6661343 - Lx8 LINE L1 -626 6847 6562 4 2038 207 0 0 0 chr1 190534239 190534262 -6661170 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 2038 354 156 0 0 chr1 190534262 190534326 -6661106 + GA-rich Low_complexity Low_complexity 3 66 0 5 2038 423 0 0 0 chr1 190534529 190534576 -6660856 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 2038 387 0 0 0 chr1 190534684 190534727 -6660705 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 2038 265 319 62 21 chr1 190536704 190536848 -6658584 + L2a LINE L2 3277 3426 0 5 2038 492 128 0 0 chr1 190536999 190537077 -6658355 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 2038 234 81 0 0 chr1 190540204 190540241 -6655191 + (T)n Simple_repeat Simple_repeat 1 37 0 5 2038 198 245 0 0 chr1 190542236 190542334 -6653098 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 2038 309 282 0 0 chr1 190542397 190542571 -6652861 + (TG)n Simple_repeat Simple_repeat 2 175 0 5 2038 594 202 0 0 chr1 190542602 190542765 -6652667 + (TG)n Simple_repeat Simple_repeat 1 163 0 5 2038 681 262 92 38 chr1 190542767 190543005 -6652427 - B4 SINE B4 0 292 42 5 2038 272 290 110 97 chr1 190543542 190543687 -6651745 - B3A SINE B2 0 198 52 5 2038 3647 195 165 35 chr1 190543684 190544727 -6650705 - ORR1C2-int LTR MaLR -331 1178 1 6 2038 816 183 307 65 chr1 190544727 190544880 -6650552 - ORR1C2 LTR MaLR 0 384 189 6 2038 468 0 0 0 chr1 190544880 190544932 -6650500 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 2038 816 183 307 65 chr1 190544932 190545087 -6650345 - ORR1C2 LTR MaLR -196 188 3 6 2038 441 84 0 0 chr1 190545234 190545305 -6650127 + (CAGAGA)n Simple_repeat Simple_repeat 6 76 0 6 2038 805 191 32 60 chr1 190546772 190546989 -6648443 - B3 SINE B2 -3 213 3 6 2038 423 0 0 0 chr1 190550842 190550889 -6644543 + (T)n Simple_repeat Simple_repeat 1 47 0 6 2038 198 0 0 0 chr1 190554959 190554981 -6640451 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 2038 276 356 32 0 chr1 190556049 190556237 -6639195 + L1M5 LINE L1 3692 3885 -2261 6 2038 525 289 14 76 chr1 190556274 190556484 -6638948 + B3A SINE B2 1 197 -1 6 2038 3782 151 30 24 chr1 190559207 190559952 -6635480 - RMER6A LTR ERVK -7 749 1 6 2038 360 287 179 7 chr1 190560474 190560625 -6634807 + ID_B1 SINE B4 1 177 -47 6 2038 667 313 62 62 chr1 190561029 190561366 -6634066 - MER2 DNA MER2_type -7 338 2 7 2038 1061 217 24 0 chr1 190561549 190561756 -6633676 - B3 SINE B2 0 216 5 7 2038 749 278 69 31 chr1 190562641 190562901 -6632531 + B4A SINE B4 2 271 -21 7 2038 639 265 0 19 chr1 190564147 190564301 -6631131 + B3A SINE B2 1 151 -47 7 2038 369 43 0 0 chr1 190564678 190564725 -6630707 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 2038 341 309 49 28 chr1 190565027 190565170 -6630262 + MamSINE1 SINE tRNA 33 178 -112 7 2038 247 301 12 24 chr1 190566018 190566103 -6629329 + GA-rich Low_complexity Low_complexity 3 86 0 7 2038 284 0 28 0 chr1 190567349 190567385 -6628047 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 2038 522 242 8 15 chr1 190567608 190567742 -6627690 - ORR1D2 LTR MaLR 0 370 238 7 2038 664 156 8 0 chr1 190567747 190567869 -6627563 - ORR1D2 LTR MaLR -247 123 1 7 2038 374 301 11 22 chr1 190569342 190569522 -6625910 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 2038 195 211 11 22 chr1 190569559 190569651 -6625781 + (TG)n Simple_repeat Simple_repeat 1 91 0 7 2038 431 294 0 20 chr1 190569664 190569813 -6625619 + (TG)n Simple_repeat Simple_repeat 2 147 0 7 2038 410 202 29 12 chr1 190569827 190569997 -6625435 + (TG)n Simple_repeat Simple_repeat 1 173 0 7 2038 255 189 0 0 chr1 190570095 190570148 -6625284 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 2038 26 30 0 0 chr1 190571479 190571512 -6623920 + AT_rich Low_complexity Low_complexity 1 33 0 8 2038 24 53 0 0 chr1 190571607 190571645 -6623787 + AT_rich Low_complexity Low_complexity 1 38 0 8 2038 210 71 0 0 chr1 190571782 190571810 -6623622 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 2038 348 144 146 55 chr1 190571829 190571939 -6623493 - RSINE1 SINE B4 -40 125 6 8 2038 463 217 11 0 chr1 190572206 190572298 -6623134 + ORR1E LTR MaLR 9 101 -258 8 2038 278 300 49 20 chr1 190572396 190572498 -6622934 + ORR1E LTR MaLR 262 366 -13 8 2038 1542 201 98 6 chr1 190572612 190572947 -6622485 + ORR1D1 LTR MaLR 1 366 -8 8 2038 26 50 0 0 chr1 190573205 190573245 -6622187 + AT_rich Low_complexity Low_complexity 1 40 0 8 2038 243 0 0 0 chr1 190573366 190573393 -6622039 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 2038 2508 260 78 22 chr1 190573397 190573424 -6622008 - Lx7 LINE L1 -348 7348 7317 8 2038 237 83 0 0 chr1 190573424 190573460 -6621972 + (CAA)n Simple_repeat Simple_repeat 2 37 0 9 2038 2508 260 78 22 chr1 190573460 190574171 -6621261 - Lx7 LINE L1 -380 7316 6569 8 2038 619 284 27 42 chr1 190575460 190575474 -6619958 + RMER15 LTR ERVL 301 314 -261 9 2038 3388 60 0 9 chr1 190575474 190575909 -6619523 + L1Md_F2 LINE L1 6149 6579 -3 9 2038 619 284 27 42 chr1 190575909 190576155 -6619277 + RMER15 LTR ERVL 315 556 -19 9 2038 2871 53 0 6 chr1 190576521 190576920 -6618512 + L1Md_F2 LINE L1 6207 6582 0 9 2038 258 32 0 0 chr1 190578533 190578564 -6616868 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 9 2039 407 111 0 0 chr1 190579792 190579864 -6615568 + L1_Mus2 LINE L1 6494 6565 -1 9 2039 263 71 24 0 chr1 190580377 190580419 -6615013 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 9 2039 437 174 10 0 chr1 190580425 190580523 -6614909 + (TG)n Simple_repeat Simple_repeat 1 99 0 9 2039 363 290 98 64 chr1 190580959 190581132 -6614300 + B3A SINE B2 2 180 -18 9 2039 273 57 0 0 chr1 190581159 190581194 -6614238 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 9 2039 571 235 103 18 chr1 190582667 190582832 -6612600 + B3A SINE B2 5 183 -15 1 2039 492 198 53 26 chr1 190584216 190584330 -6611102 + B1_Mur2 SINE Alu 22 138 -11 1 2039 337 275 0 0 chr1 190584351 190584431 -6611001 + U6 snRNA snRNA 1 80 -27 1 2039 185 65 0 31 chr1 190584431 190584463 -6610969 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1 2039 4120 44 0 0 chr1 190586687 190587162 -6608270 - MT2C_Mm LTR ERVL 0 475 1 1 2039 293 281 58 4 chr1 190587177 190587367 -6608065 - L1MD LINE L1 -705 5473 5269 1 2039 1798 163 37 33 chr1 190587556 190587937 -6607495 - ORR1C1 LTR MaLR 0 421 1 1 2039 458 171 0 0 chr1 190587937 190588019 -6607413 - PB1D10 SINE Alu -34 83 2 1 2039 390 315 63 29 chr1 190588624 190589039 -6606393 - L1MD LINE L1 -1450 4696 4270 1 2039 306 320 45 14 chr1 190589405 190589624 -6605808 - L1MD LINE L1 -2451 3695 3472 1 2039 1125 296 138 25 chr1 190589848 190590377 -6605055 - Lx8 LINE L1 -6 7467 6879 1 2039 2125 256 10 70 chr1 190590427 190591142 -6604290 + L1_Mur3 LINE L1 4525 5196 -684 1 2039 19274 58 22 12 chr1 190591155 190592201 -6603231 - MusHAL1 LINE L1 -56 3297 2229 1 2039 267 79 0 0 chr1 190592201 190592239 -6603193 + (TGG)n Simple_repeat Simple_repeat 1 38 0 1 2039 19274 84 19 14 chr1 190592239 190594389 -6601043 - MusHAL1 LINE L1 -1125 2228 17 1 2039 243 0 0 0 chr1 190594397 190594424 -6601008 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 2039 314 314 85 54 chr1 190594579 190594672 -6600760 - L1MD LINE L1 -3204 2942 2844 1 2039 210 37 0 0 chr1 190594672 190594699 -6600733 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 2039 538 283 50 42 chr1 190594699 190595029 -6600403 - L1MD LINE L1 -3303 2843 2506 1 2039 356 277 68 15 chr1 190595089 190595221 -6600211 + RMER5 LTR ERV1 380 518 -16 1 2039 287 96 494 0 chr1 190598202 190598285 -6597147 - URR1B DNA MER1_type -4 221 98 1 2039 195 42 0 0 chr1 190599016 190599040 -6596392 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1 2039 1093 82 7 0 chr1 190599055 190599201 -6596231 - B1_Mus1 SINE Alu 0 148 2 1 2039 2459 306 74 44 chr1 190599205 190600325 -6595107 - Lx8 LINE L1 -129 7344 6191 1 2039 417 121 0 0 chr1 190600343 190600426 -6595006 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 1 2039 420 287 30 65 chr1 190600427 190600595 -6594837 - RSINE1 SINE B4 0 165 4 1 2039 241 361 5 99 chr1 190601702 190601914 -6593518 + L2a LINE L2 2833 3024 -395 1 2039 256 352 78 0 chr1 190602042 190602170 -6593262 + L2a LINE L2 3280 3417 -9 1 2039 538 276 19 13 chr1 190603572 190603730 -6591702 + B4 SINE B4 132 290 -2 1 2039 551 230 99 26 chr1 190604182 190604334 -6591098 + RSINE1 SINE B4 3 165 0 1 2039 377 211 13 0 chr1 190604743 190604819 -6590613 - B1F SINE Alu -61 88 12 1 2039 184 77 0 49 chr1 190605728 190605769 -6589663 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 2039 1156 68 0 7 chr1 190605925 190606073 -6589359 - B1_Mus2 SINE Alu 0 147 1 1 2039 213 39 0 0 chr1 190607940 190607966 -6587466 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 2039 402 39 0 0 chr1 190608129 190608181 -6587251 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 2039 813 285 85 18 chr1 190609000 190609329 -6586103 + MTEa LTR MaLR 13 363 -16 1 2039 203 256 0 0 chr1 190610001 190610044 -6585388 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 2039 249 300 14 0 chr1 190610063 190610133 -6585299 - B3A SINE B2 -15 183 113 1 2039 312 70 0 0 chr1 190610660 190610703 -6584729 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 2039 492 292 0 0 chr1 190610728 190610841 -6584591 - B3A SINE B2 -85 113 1 1 2039 2850 30 42 0 chr1 190612065 190612397 -6583035 - ORR1A0 LTR MaLR 0 346 1 1 2039 455 248 41 0 chr1 190612513 190612634 -6582798 - B4A SINE B4 -61 231 106 1 2039 243 0 0 0 chr1 190612665 190612692 -6582740 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 2039 222 37 0 0 chr1 190613528 190613555 -6581877 + (T)n Simple_repeat Simple_repeat 1 27 0 1 2039 1287 85 38 21 chr1 190613850 190614216 -6581216 + (TAGA)n Simple_repeat Simple_repeat 1 372 0 1 2039 444 292 107 0 chr1 190614345 190614523 -6580909 - L1MB2 LINE L1 -247 5924 5728 1 2039 432 0 0 0 chr1 190614562 190614610 -6580822 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 2039 396 234 17 15 chr1 190614612 190614751 -6580681 - L1M3 LINE L1 -690 5488 5344 1 2039 285 244 128 45 chr1 190615030 190615163 -6580269 + MLT1A1 LTR MaLR 265 408 0 1 2039 1371 314 85 34 chr1 190615292 190616372 -6579060 - L1M3 LINE L1 -1054 5086 3952 1 2039 491 107 76 19 chr1 190616539 190616712 -6578720 - L1_Mus3 LINE L1 0 6638 6528 1 2039 810 70 0 0 chr1 190616716 190616816 -6578616 + L1_Mus3 LINE L1 6381 6480 -158 1 2039 512 15 15 0 chr1 190616818 190616883 -6578549 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 1 2039 1134 78 0 0 chr1 190616886 190617028 -6578404 - B1_Mus1 SINE Alu -6 142 1 1 2039 493 189 28 19 chr1 190617057 190617165 -6578267 + B3A SINE B2 1 109 -89 1 2039 975 135 0 5 chr1 190617223 190618122 -6577310 + (TG)n Simple_repeat Simple_repeat 1 894 0 1 2039 424 288 30 67 chr1 190618130 190618156 -6577276 - RSINE1 SINE B4 0 165 142 1 2039 963 118 0 0 chr1 190618156 190618387 -6577045 + (TG)n Simple_repeat Simple_repeat 1 231 0 1 2039 424 288 30 67 chr1 190618387 190618521 -6576911 - RSINE1 SINE B4 -24 141 8 1 2039 582 281 68 63 chr1 190618539 190618934 -6576498 - L1M3 LINE L1 -2335 3805 3409 1 2039 500 111 12 0 chr1 190619430 190619511 -6575921 + (GGA)n Simple_repeat Simple_repeat 1 82 0 1 2039 2024 176 21 16 chr1 190619720 190620106 -6575326 + ORR1B1 LTR MaLR 5 392 -2 1 2039 945 280 117 53 chr1 190620394 190621218 -6574214 + L1MA4 LINE L1 5048 5930 -370 1 2039 537 270 56 24 chr1 190622027 190622219 -6573213 + B3A SINE B2 1 189 -6 1 2039 295 273 15 0 chr1 190622599 190622665 -6572767 + ID4 SINE ID 17 83 0 1 2039 26 50 0 0 chr1 190622807 190622847 -6572585 + AT_rich Low_complexity Low_complexity 1 40 0 1 2039 275 296 7 0 chr1 190622882 190623034 -6572398 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 2039 644 214 6 0 chr1 190623060 190623238 -6572194 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 2039 715 273 76 15 chr1 190623251 190623515 -6571917 - B4A SINE B4 -8 284 5 1 2039 1463 155 0 4 chr1 190623913 190624140 -6571292 + URR1A DNA MER1_type 1 226 0 1 2039 396 306 9 36 chr1 190624419 190624531 -6570901 - B4 SINE B4 -14 278 170 1 2039 5233 65 6 25 chr1 190624832 190625527 -6569905 + L1Md_F2 LINE L1 5901 6582 0 1 2039 348 258 140 0 chr1 190625711 190625804 -6569628 - B4 SINE B4 -180 112 7 1 2039 488 315 12 24 chr1 190626071 190626237 -6569195 - RSINE1 SINE B4 0 165 2 1 2039 458 297 102 33 chr1 190626237 190626480 -6568952 + Charlie1b DNA MER1_type 116 375 -148 1 2039 523 243 0 9 chr1 190626548 190626656 -6568776 - PB1D10 SINE Alu -1 116 10 1 2039 496 300 76 12 chr1 190627655 190627827 -6567605 - B3A SINE B2 -7 191 9 1 2039 279 0 0 0 chr1 190629050 190629081 -6566351 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 2039 30 27 0 0 chr1 190629185 190629222 -6566210 + AT_rich Low_complexity Low_complexity 1 37 0 1 2039 21 0 0 0 chr1 190631389 190631410 -6564022 + AT_rich Low_complexity Low_complexity 1 21 0 1 2039 503 131 16 69 chr1 190632115 190632304 -6563128 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 2039 378 210 60 20 chr1 190632309 190632563 -6562869 + (GTGTG)n Simple_repeat Simple_repeat 1 264 0 1 2039 462 49 0 0 chr1 190632603 190632664 -6562768 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 2039 612 291 174 35 chr1 190632689 190633177 -6562255 - Lx8 LINE L1 -28 7445 6890 1 2039 572 290 77 39 chr1 190633259 190633467 -6561965 - ID_B1 SINE B4 0 224 9 1 2039 261 0 0 0 chr1 190633755 190633784 -6561648 + (T)n Simple_repeat Simple_repeat 1 29 0 1 2039 414 264 132 73 chr1 190634609 190634813 -6560619 + MTEa LTR MaLR 1 216 -163 1 2039 211 234 29 86 chr1 190634908 190634978 -6560454 - ID4_ SINE ID -14 69 4 1 2039 432 0 0 0 chr1 190635825 190635873 -6559559 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 2039 853 36 82 0 chr1 190636334 190636617 -6558815 + (GTTTG)n Simple_repeat Simple_repeat 1 306 0 1 2039 315 0 0 0 chr1 190636782 190636817 -6558615 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 2039 481 287 8 0 chr1 190637492 190637621 -6557811 - RSINE1 SINE B4 -34 131 2 1 2039 341 291 35 0 chr1 190640072 190640158 -6555274 - B1F SINE Alu -8 141 53 1 2039 11258 220 68 41 chr1 190640254 190642600 -6552832 - L1_Mur3 LINE L1 -617 5266 2642 1 2039 447 35 0 0 chr1 190642600 190642657 -6552775 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 2039 11258 185 33 61 chr1 190642657 190644510 -6550922 - L1_Mur3 LINE L1 -3237 2643 892 1 2039 22 35 0 0 chr1 190645127 190645156 -6550276 + AT_rich Low_complexity Low_complexity 1 29 0 1 2039 471 299 0 45 chr1 190645226 190645359 -6550073 + B3A SINE B2 26 152 -46 1 2039 225 108 0 0 chr1 190645362 190645399 -6550033 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 2039 390 91 0 0 chr1 190645470 190645525 -6549907 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 2039 22 56 0 0 chr1 190646124 190646160 -6549272 + AT_rich Low_complexity Low_complexity 1 36 0 1 2039 569 272 18 30 chr1 190646194 190646361 -6549071 + RSINE1 SINE B4 1 165 0 1 2039 794 151 0 64 chr1 190646720 190646876 -6548556 - RMER2 LTR ERV1 -368 199 54 1 2039 303 286 26 43 chr1 190647418 190647535 -6547897 + MLT1A1 LTR MaLR 294 408 0 1 2039 3650 119 22 42 chr1 190647590 190648168 -6547264 - RMER2 LTR ERV1 0 567 1 1 2039 646 203 141 30 chr1 190648319 190648517 -6546915 + ID_B1 SINE B4 1 220 -4 1 2039 418 309 80 0 chr1 190648592 190648767 -6546665 - RMER30 DNA MER1_type -7 195 7 1 2039 206 259 0 36 chr1 190651064 190651120 -6544312 + L2b LINE L2 3240 3293 -82 1 2039 501 17 0 0 chr1 190652047 190652105 -6543327 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 2039 222 304 0 0 chr1 190652110 190652166 -6543266 + (CATA)n Simple_repeat Simple_repeat 2 57 0 1 2039 942 207 104 52 chr1 190652223 190652493 -6542939 + B4A SINE B4 2 285 -7 1 2039 917 329 41 62 chr1 190653274 190653786 -6541646 - Lx9 LINE L1 -135 7509 7009 1 2039 225 0 0 0 chr1 190654390 190654415 -6541017 + (A)n Simple_repeat Simple_repeat 1 25 0 1 2039 657 288 63 60 chr1 190655174 190655458 -6539974 + B4 SINE B4 8 292 0 1 2039 425 274 0 22 chr1 190655473 190655656 -6539776 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 2039 464 286 15 29 chr1 190655846 190655983 -6539449 - ID_B1 SINE B4 -3 221 87 2 2039 386 300 0 0 chr1 190656127 190656227 -6539205 - MER45A DNA Tip100 0 178 79 2 2039 190 73 24 24 chr1 190656979 190657021 -6538411 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 2039 1169 49 0 14 chr1 190657022 190657168 -6538264 - B1_Mus2 SINE Alu -2 145 2 2 2039 837 192 0 7 chr1 190657282 190657429 -6538003 - B1_Mur1 SINE Alu -2 147 2 2 2039 270 0 0 0 chr1 190658368 190658398 -6537034 + (A)n Simple_repeat Simple_repeat 1 30 0 2 2039 338 234 26 0 chr1 190659074 190659151 -6536281 - RSINE1 SINE B4 -61 104 26 2 2039 294 125 0 0 chr1 190660642 190660690 -6534742 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 2039 2228 86 6 0 chr1 190660735 190661050 -6534382 - ORR1A2 LTR MaLR -10 317 1 2 2039 860 286 137 37 chr1 190661059 190661305 -6534127 - L1MA4 LINE L1 -415 5885 5648 2 2039 348 24 0 0 chr1 190661305 190661346 -6534086 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 2039 860 289 111 35 chr1 190661346 190661936 -6533496 - L1MA4 LINE L1 -653 5647 4993 2 2039 941 229 164 46 chr1 190661944 190662311 -6533121 + MTD LTR MaLR 10 419 0 2 2039 336 24 0 0 chr1 190662525 190662566 -6532866 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 2039 464 284 94 22 chr1 190662762 190662942 -6532490 - B3A SINE B2 0 198 6 2 2039 341 269 69 9 chr1 190664316 190664432 -6531000 - MIR SINE MIR -70 192 70 2 2039 516 262 135 5 chr1 190664775 190664967 -6530465 + L3 LINE CR1 4085 4301 -188 2 2039 633 284 34 0 chr1 190667314 190667490 -6527942 + B3A SINE B2 1 182 -16 2 2039 28 29 0 0 chr1 190667505 190667540 -6527892 + AT_rich Low_complexity Low_complexity 1 35 0 2 2039 315 311 84 51 chr1 190670203 190670477 -6524955 - B4A SINE B4 -8 284 2 2 2039 962 232 24 10 chr1 190671020 190671229 -6524203 + B3 SINE B2 1 212 -4 2 2039 291 264 41 7 chr1 190674008 190674153 -6521279 + CT-rich Low_complexity Low_complexity 2 151 0 2 2039 488 161 0 17 chr1 190674170 190674290 -6521142 + (TCTCTG)n Simple_repeat Simple_repeat 5 122 0 2 2039 1364 311 69 33 chr1 190674686 190674892 -6520540 - L1_Mur3 LINE L1 -3087 2793 2567 2 2039 414 0 0 0 chr1 190674892 190674938 -6520494 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 2 2039 1364 311 69 33 chr1 190674938 190675457 -6519975 - L1_Mur3 LINE L1 -3314 2566 2042 2 2039 299 300 62 87 chr1 190675638 190675951 -6519481 + RSINE1 SINE B4 2 290 -2 2 2039 602 294 45 6 chr1 190676754 190676932 -6518500 + ID_B1 SINE B4 39 223 -1 2 2039 252 0 0 0 chr1 190677009 190677037 -6518395 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 2039 3918 71 2 14 chr1 190677470 190677984 -6517448 - L1_Mus1 LINE L1 0 6567 6060 2 2039 1703 86 13 0 chr1 190677985 190678219 -6517213 + L1_Mus1 LINE L1 5843 6079 -488 2 2039 312 70 0 0 chr1 190678955 190678998 -6516434 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 2039 628 247 124 0 chr1 190679015 190679201 -6516231 + B3 SINE B2 4 212 -4 2 2039 225 0 0 0 chr1 190681774 190681799 -6513633 + (CATTT)n Simple_repeat Simple_repeat 1 25 0 2 2039 549 267 104 30 chr1 190684345 190684546 -6510886 + B3 SINE B2 1 216 0 2 2039 183 156 0 0 chr1 190684546 190684578 -6510854 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 2039 857 252 30 98 chr1 190685139 190685434 -6509998 + B4 SINE B4 8 282 -10 2 2039 297 0 0 0 chr1 190685441 190685474 -6509958 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 2039 297 0 0 0 chr1 190686248 190686281 -6509151 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 2039 659 155 131 8 chr1 190687189 190687319 -6508113 + B1_Mus2 SINE Alu 1 146 -1 2 2039 735 204 35 0 chr1 190687564 190687706 -6507726 + B1_Mur2 SINE Alu 2 148 -1 2 2039 275 240 67 0 chr1 190688955 190689030 -6506402 - ID4 SINE ID -2 81 2 2 2039 257 340 0 9 chr1 190689122 190689229 -6506203 + GA-rich Low_complexity Low_complexity 3 108 0 2 2039 264 59 0 0 chr1 190689229 190689263 -6506169 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 2 2039 462 220 0 39 chr1 190691097 190691201 -6504231 - ORR1E LTR MaLR -258 101 2 2 2039 180 111 0 0 chr1 190691691 190691718 -6503714 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2 2039 903 252 89 87 chr1 190692085 190692454 -6502978 - ORR1D2 LTR MaLR 0 370 1 2 2039 187 202 41 25 chr1 190693012 190693134 -6502298 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 2 2039 574 223 13 0 chr1 190693107 190693264 -6502168 + (CATA)n Simple_repeat Simple_repeat 2 160 0 2 2039 189 74 0 0 chr1 190693472 190693499 -6501933 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 2039 1257 41 0 0 chr1 190693519 190693666 -6501766 - B1_Mm SINE Alu 0 147 1 2 2039 190 274 167 69 chr1 190693704 190693806 -6501626 + MIRb SINE MIR 2 113 -155 2 2039 387 0 0 0 chr1 190694323 190694366 -6501066 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 2039 351 306 53 32 chr1 190694406 190694595 -6500837 - LTR50 LTR ERVL -100 695 503 2 2039 297 287 10 50 chr1 190694739 190694838 -6500594 - LTR41B LTR ERVL -579 179 85 2 2039 341 205 132 0 chr1 190697331 190697414 -6498018 - MTE2b LTR MaLR -268 111 18 2 2039 1009 229 57 1 chr1 190697794 190698062 -6497370 - MTE2b LTR MaLR -85 294 1 2 2039 669 131 0 0 chr1 190698130 190698237 -6497195 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 2039 216 0 0 0 chr1 190698364 190698388 -6497044 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 2039 369 0 0 0 chr1 190698388 190698429 -6497003 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 2039 357 24 0 0 chr1 190700905 190700947 -6494485 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 2039 1134 240 78 54 chr1 190700982 190701352 -6494080 - MTD LTR MaLR -40 379 1 2 2039 335 258 0 22 chr1 190703535 190703626 -6491806 + GA-rich Low_complexity Low_complexity 1 89 0 2 2039 219 139 0 0 chr1 190703791 190703827 -6491605 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 2039 635 298 12 12 chr1 190704459 190704622 -6490810 - RSINE1 SINE B4 0 165 3 2 2039 383 221 52 10 chr1 190704735 190704831 -6490601 - B1F SINE Alu -49 100 1 2 2039 315 0 0 0 chr1 190705430 190705465 -6489967 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 2039 444 37 0 0 chr1 190705470 190705524 -6489908 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 2039 252 0 0 0 chr1 190705593 190705621 -6489811 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 2039 25 31 0 0 chr1 190707517 190707549 -6487883 + AT_rich Low_complexity Low_complexity 1 32 0 2 2039 423 0 0 0 chr1 190709252 190709299 -6486133 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 2039 216 0 0 0 chr1 190709620 190709644 -6485788 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 2040 275 0 0 28 chr1 190709764 190709800 -6485632 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 2040 207 100 0 0 chr1 190709857 190709887 -6485545 + (A)n Simple_repeat Simple_repeat 1 30 0 2 2040 675 94 0 0 chr1 190710084 190710180 -6485252 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 2040 240 304 130 26 chr1 190710180 190710295 -6485137 - RSINE1 SINE B4 -32 133 7 2 2040 324 230 0 94 chr1 190710448 190710544 -6484888 - B4A SINE B4 -1 291 205 2 2040 241 359 60 0 chr1 190711102 190711219 -6484213 - MIRc SINE MIR -143 125 2 2 2040 423 0 0 0 chr1 190711425 190711472 -6483960 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 2040 1013 150 0 6 chr1 190711472 190711653 -6483779 + GA-rich Low_complexity Low_complexity 1 180 0 2 2040 186 43 0 0 chr1 190711653 190711676 -6483756 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 2 2040 315 317 106 0 chr1 190712097 190712220 -6483212 + B1F1 SINE Alu 6 141 -8 2 2040 628 287 112 26 chr1 190712799 190713067 -6482365 + B4 SINE B4 2 292 0 2 2040 223 182 23 0 chr1 190713073 190713117 -6482315 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 2040 239 170 19 0 chr1 190713698 190713751 -6481681 + A-rich Low_complexity Low_complexity 2 55 0 2 2040 681 199 11 6 chr1 190713762 190713939 -6481493 + GA-rich Low_complexity Low_complexity 3 180 0 2 2040 201 233 23 0 chr1 190714400 190714443 -6480989 + CT-rich Low_complexity Low_complexity 1 44 0 2 2040 207 69 0 0 chr1 190716318 190716347 -6479085 + (G)n Simple_repeat Simple_repeat 1 29 0 2 2040 676 300 73 15 chr1 190717725 190717999 -6477433 - B4 SINE B4 0 292 3 2 2040 603 51 0 0 chr1 190718299 190718378 -6477054 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 2040 191 80 58 39 chr1 190718690 190718742 -6476690 + (GGGTG)n Simple_repeat Simple_repeat 2 54 0 2 2040 821 209 194 21 chr1 190719031 190719222 -6476210 - URR1B DNA MER1_type -1 224 1 2 2040 193 316 120 26 chr1 190719579 190719696 -6475736 - L2c LINE L2 0 3387 3260 2 2040 763 131 0 14 chr1 190721217 190721356 -6474076 + (TCC)n Simple_repeat Simple_repeat 1 137 0 2 2040 405 231 0 0 chr1 190722475 190722622 -6472810 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 2040 289 262 107 63 chr1 190722625 190722784 -6472648 + RMER12 LTR ERVK 737 902 -420 2 2040 440 206 30 20 chr1 190722757 190722856 -6472576 - B4A SINE B4 -18 274 175 2 2040 211 276 204 0 chr1 190722805 190722903 -6472529 - PB1D7 SINE Alu -2 118 1 2 2040 376 229 60 60 chr1 190722903 190722984 -6472448 - B4A SINE B4 -207 85 5 2 2040 1149 312 139 17 chr1 190723047 190723815 -6471617 - Lx8 LINE L1 -1 7472 6586 2 2040 293 203 262 24 chr1 190724106 190724232 -6471200 + Lx8 LINE L1 6317 6472 -1001 2 2040 495 252 6 104 chr1 190724871 190725053 -6470379 + RSINE1 SINE B4 2 165 0 2 2040 646 292 86 15 chr1 190725976 190726244 -6469188 - B4A SINE B4 -4 288 2 2 2040 430 333 37 9 chr1 190727292 190727510 -6467922 + ID_B1 SINE B4 1 224 0 3 2040 393 22 0 0 chr1 190727785 190727831 -6467601 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 2040 468 0 0 0 chr1 190729201 190729253 -6466179 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 2040 895 230 20 25 chr1 190729925 190730126 -6465306 - URR1A DNA MER1_type -3 223 24 3 2040 770 309 127 69 chr1 190731725 190732613 -6462819 - L2a LINE L2 -9 3417 2462 3 2040 722 285 60 39 chr1 190733298 190733583 -6461849 - Tigger5 DNA MER2_type 0 2406 2116 3 2040 288 0 0 0 chr1 190734100 190734132 -6461300 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 2040 187 279 57 29 chr1 190735510 190735580 -6459852 + L2 LINE L2 446 517 -2902 3 2040 784 255 75 46 chr1 190736400 190736680 -6458752 + B4A SINE B4 2 289 -3 3 2040 525 249 0 0 chr1 190736685 190736862 -6458570 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 2040 21 0 0 0 chr1 190737838 190737859 -6457573 + AT_rich Low_complexity Low_complexity 1 21 0 3 2040 530 256 77 8 chr1 190738021 190738151 -6457281 - ID_B1 SINE B4 -8 216 78 3 2040 389 256 281 0 chr1 190738150 190738314 -6457118 - ID_B1 SINE B4 -1 223 14 3 2040 1584 222 13 82 chr1 190738564 190738956 -6456476 - MTE2b LTR MaLR -14 365 1 3 2040 21 71 0 0 chr1 190741158 190741200 -6454232 + AT_rich Low_complexity Low_complexity 1 42 0 3 2040 524 254 29 15 chr1 190741226 190741362 -6454070 + ID_B1 SINE B4 8 145 -79 3 2040 514 316 88 28 chr1 190741546 190741797 -6453635 + MER46C DNA MER2_type 2 267 -71 3 2040 264 77 0 0 chr1 190741814 190741853 -6453579 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 2040 353 246 96 126 chr1 190742616 190742751 -6452681 - B1_Mur1 SINE Alu -7 142 12 3 2040 396 0 0 0 chr1 190742859 190742903 -6452529 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 2040 1352 68 0 6 chr1 190742904 190743081 -6452351 - B2_Mm2 SINE B2 -19 176 1 3 2040 243 0 0 0 chr1 190743278 190743305 -6452127 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 2040 332 231 25 37 chr1 190743781 190743862 -6451570 - ID SINE ID -143 81 2 3 2040 501 325 142 48 chr1 190744412 190744454 -6450978 - MLT1A1 LTR MaLR 0 408 366 3 2040 2253 138 17 72 chr1 190744454 190744868 -6450564 - ORR1B1 LTR MaLR -3 391 1 3 2040 501 325 142 48 chr1 190744868 190745093 -6450339 - MLT1A1 LTR MaLR -43 365 116 3 2040 703 125 2 2 chr1 190745123 190745240 -6450192 + ORR1B1 LTR MaLR 191 307 -67 3 2040 472 221 0 17 chr1 190745370 190745485 -6449947 - PB1D9 SINE Alu -3 117 5 3 2040 23 33 0 0 chr1 190746039 190746069 -6449363 + AT_rich Low_complexity Low_complexity 1 30 0 3 2040 294 318 0 9 chr1 190746338 190746446 -6448986 + CT-rich Low_complexity Low_complexity 3 109 0 3 2040 575 129 12 0 chr1 190746909 190746994 -6448438 - ORR1B1 LTR MaLR -126 268 183 3 2040 483 227 46 69 chr1 190746997 190747172 -6448260 + B4 SINE B4 122 292 0 3 2040 227 347 0 0 chr1 190747174 190747249 -6448183 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 2040 4481 16 2 0 chr1 190747288 190747780 -6447652 - MT2_Mm LTR ERVL 0 493 1 3 2040 319 0 0 0 chr1 190747780 190747818 -6447614 - MERVL-int LTR ERVL 0 5485 5448 3 2040 403 167 46 35 chr1 190747818 190747905 -6447527 - ORR1B1-int LTR MaLR -1323 640 553 3 2040 48986 15 0 0 chr1 190747905 190753264 -6442168 - MERVL-int LTR ERVL -125 5360 1 3 2040 4481 16 2 0 chr1 190753264 190753756 -6441676 - MT2_Mm LTR ERVL 0 493 1 3 2040 252 0 0 0 chr1 190754386 190754414 -6441018 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 2040 1151 287 38 30 chr1 190754816 190755182 -6440250 - MTEb LTR MaLR 0 379 11 3 2040 1286 102 11 0 chr1 190755332 190755508 -6439924 + B2_Mm1t SINE B2 2 179 -14 3 2040 384 116 356 59 chr1 190755540 190755641 -6439791 + B2_Mm2 SINE B2 47 177 -18 3 2040 200 224 0 20 chr1 190756641 190756691 -6438741 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 2040 712 261 102 42 chr1 190756789 190757025 -6438407 - B4A SINE B4 -41 251 2 3 2040 719 210 79 10 chr1 190757326 190757602 -6437830 - ORR1D1 LTR MaLR 0 421 1 3 2040 286 226 16 16 chr1 190757602 190757662 -6437770 + ORR1E LTR MaLR 293 352 -7 3 2040 794 250 54 15 chr1 190757669 190757872 -6437560 - MTD LTR MaLR -207 212 2 3 2040 243 61 0 0 chr1 190758120 190758153 -6437279 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 2040 1777 220 84 18 chr1 190758157 190758481 -6436951 + MTD LTR MaLR 1 355 -64 3 2040 2006 169 27 16 chr1 190758481 190758849 -6436583 - ORR1D1 LTR MaLR -2 372 1 3 2040 1777 220 84 18 chr1 190758849 190758917 -6436515 + MTD LTR MaLR 356 419 0 3 2040 213 278 40 27 chr1 190759535 190759609 -6435823 + L2a LINE L2 3344 3418 -8 3 2040 1028 248 118 73 chr1 190759636 190760019 -6435413 + MTD LTR MaLR 1 400 -19 3 2040 532 241 102 150 chr1 190760153 190760407 -6435025 - MTE2b LTR MaLR -137 242 1 3 2040 237 346 81 22 chr1 190760431 190760567 -6434865 + MIR SINE MIR 46 189 -73 3 2040 520 306 60 27 chr1 190760601 190760786 -6434646 + RMER30 DNA MER1_type 11 201 -1 3 2040 660 272 111 84 chr1 190762035 190762296 -6433136 + B4 SINE B4 21 288 -4 3 2040 232 333 25 13 chr1 190763274 190763353 -6432079 + ID4_ SINE ID 1 80 -3 3 2040 259 349 59 24 chr1 190763841 190764011 -6431421 - ORR1E LTR MaLR -105 254 79 3 2040 507 264 48 42 chr1 190764791 190764957 -6430475 + B3A SINE B2 48 214 -2 3 2040 191 23 67 44 chr1 190765110 190765155 -6430277 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3 2040 1096 30 0 0 chr1 190765155 190765286 -6430146 - B1_Mm SINE Alu 0 147 17 3 2040 558 117 0 0 chr1 190765284 190765361 -6430071 + tRNA-Asn-AAC tRNA tRNA 1 77 0 3 2040 22 0 0 0 chr1 190765590 190765612 -6429820 + AT_rich Low_complexity Low_complexity 1 22 0 3 2040 198 0 0 0 chr1 190767131 190767153 -6428279 + (A)n Simple_repeat Simple_repeat 1 22 0 3 2040 757 227 51 64 chr1 190767296 190767604 -6427828 - RMER17C LTR ERVK 0 410 100 3 2040 2557 71 144 0 chr1 190767604 190767783 -6427649 + BGLII LTR ERVK 1 217 -204 3 2040 816 40 0 0 chr1 190767783 190767883 -6427549 + (GA)n Simple_repeat Simple_repeat 2 101 0 3 2040 2557 71 144 0 chr1 190767883 190768071 -6427361 + BGLII LTR ERVK 218 420 -1 3 2040 757 223 8 58 chr1 190768071 190768224 -6427208 - RMER17C LTR ERVK -259 151 1 3 2040 632 232 20 27 chr1 190768267 190768413 -6427019 - B1_Mur1 SINE Alu 0 149 5 3 2040 863 238 118 70 chr1 190771510 190771727 -6423705 + B4 SINE B4 1 230 -62 3 2040 910 192 91 0 chr1 190771727 190771925 -6423507 + B3 SINE B2 1 216 0 3 2040 863 268 86 55 chr1 190771925 190772006 -6423426 + B4 SINE B4 231 284 -8 3 2040 513 306 121 14 chr1 190772670 190772952 -6422480 - MER63D DNA AcHobo -703 358 47 3 2040 751 120 30 0 chr1 190773143 190773310 -6422122 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 2040 678 116 37 20 chr1 190773325 190773624 -6421808 + (TG)n Simple_repeat Simple_repeat 1 303 0 3 2040 522 194 247 14 chr1 190773635 190773781 -6421651 - B3A SINE B2 -18 180 1 3 2040 390 42 0 0 chr1 190774162 190774210 -6421222 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 2040 1113 224 174 30 chr1 190775786 190776149 -6419283 + MTD LTR MaLR 5 419 0 3 2040 432 0 0 0 chr1 190776506 190776554 -6418878 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 2040 212 283 98 0 chr1 190776575 190776667 -6418765 + MIR SINE MIR 6 106 -162 3 2040 240 266 37 37 chr1 190776972 190777054 -6418378 - MTEb LTR MaLR -2 377 296 3 2040 1214 249 54 62 chr1 190777189 190777597 -6417835 - MTE2a LTR MaLR 0 419 18 3 2040 681 76 0 0 chr1 190777832 190777924 -6417508 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 3 2040 605 265 87 72 chr1 190778275 190778539 -6416893 + B4 SINE B4 3 270 -22 3 2040 295 256 93 21 chr1 190780172 190780403 -6415029 - MTE2a LTR MaLR 0 379 110 3 2040 797 201 92 42 chr1 190781441 190781797 -6413635 - L1M2c LINE L1 -1861 4987 4516 3 2040 339 242 104 44 chr1 190781803 190781987 -6413445 - L1M2c LINE L1 -2468 4377 4191 3 2040 727 266 15 40 chr1 190781987 190782187 -6413245 - B3A SINE B2 -2 196 2 3 2040 329 244 78 128 chr1 190782187 190782284 -6413148 - L1M2c LINE L1 -2655 4190 4110 3 2040 338 319 7 84 chr1 190782328 190782482 -6412950 - L1M2c LINE L1 -3821 3024 2883 3 2040 298 283 269 9 chr1 190782710 190783056 -6412376 - L1M2c LINE L1 -4169 2680 2245 3 2040 1119 248 183 21 chr1 190783105 190783488 -6411944 - Lx8 LINE L1 -18 7455 7011 3 2040 320 278 186 34 chr1 190783485 190783932 -6411500 - L1M2c LINE L1 -4640 2209 1695 3 2040 276 261 14 0 chr1 190785340 190785409 -6410023 - ID4 SINE ID -10 73 4 3 2040 428 298 29 85 chr1 190787075 190787237 -6408195 - ID_B1 SINE B4 -134 158 6 3 2040 872 263 24 5 chr1 190787693 190787899 -6407533 + ID_B1 SINE B4 1 210 -14 3 2040 441 0 0 0 chr1 190787903 190787952 -6407480 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 2040 3384 13 39 0 chr1 190789657 190790038 -6405394 + MTA_Mm LTR MaLR 1 396 0 3 2040 232 214 0 0 chr1 190794752 190794807 -6400625 - B1F SINE Alu -3 146 63 3 2040 820 244 88 17 chr1 190796995 190797233 -6398199 + ORR1D2 LTR MaLR 1 255 -115 3 2040 449 194 83 68 chr1 190797294 190797427 -6398005 + ORR1D2 LTR MaLR 211 345 -25 3 2040 235 261 31 0 chr1 190797452 190797517 -6397915 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 3 2040 22 0 0 0 chr1 190797691 190797713 -6397719 + AT_rich Low_complexity Low_complexity 1 22 0 3 2040 1263 20 0 13 chr1 190797713 190797862 -6397570 - B1_Mus2 SINE Alu 0 147 1 3 2040 194 156 0 22 chr1 190798749 190798795 -6396637 + G-rich Low_complexity Low_complexity 4 48 0 3 2040 587 257 106 7 chr1 190798940 190799081 -6396351 - B3A SINE B2 -8 190 36 3 2040 180 0 0 0 chr1 190799725 190799745 -6395687 + (CAA)n Simple_repeat Simple_repeat 1 20 0 3 2040 220 191 0 0 chr1 190800790 190800837 -6394595 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 2040 1638 209 76 63 chr1 190800853 190801312 -6394120 + MYSERV16_I-int LTR ERVK 457 921 -1405 3 2040 367 271 73 18 chr1 190801319 190801428 -6394004 + RMER4A LTR ERVK 315 429 -37 3 2040 362 158 28 65 chr1 190801428 190801452 -6393980 + MYSERV16_I-int LTR ERVK 1037 1055 -1271 3 2040 1465 60 16 5 chr1 190801452 190801637 -6393795 + B2_Mm2 SINE B2 2 188 -7 3 2040 362 158 28 65 chr1 190801637 190801720 -6393712 + MYSERV16_I-int LTR ERVK 1056 1140 -1186 3 2040 565 248 96 7 chr1 190802024 190802170 -6393262 + RSINE1 SINE B4 3 161 -4 3 2040 1234 21 14 0 chr1 190802648 190802793 -6392639 - B1_Mus1 SINE Alu -1 147 1 3 2040 420 262 46 9 chr1 190802851 190802959 -6392473 + RSINE1 SINE B4 2 113 -52 4 2040 564 282 51 8 chr1 190802957 190803138 -6392294 + B3A SINE B2 6 194 -22 4 2040 811 184 0 14 chr1 190803138 190803276 -6392156 + B1_Mur2 SINE Alu 1 136 -13 4 2040 484 296 52 66 chr1 190803276 190803307 -6392125 + B3 SINE B2 195 215 -1 4 2040 800 27 243 0 chr1 190804484 190804595 -6390837 + B1_Mus1 SINE Alu 2 139 -9 4 2040 812 210 68 29 chr1 190805885 190806091 -6389341 - B3 SINE B2 -1 215 2 4 2040 319 318 102 8 chr1 190806402 190806529 -6388903 - MER58B DNA MER1_type 0 341 203 4 2040 847 155 11 0 chr1 190806529 190806703 -6388729 + GA-rich Low_complexity Low_complexity 2 177 0 4 2040 282 267 193 17 chr1 190810141 190810335 -6385097 - MER2 DNA MER2_type -4 341 118 4 2040 274 315 7 7 chr1 190812546 190812690 -6382742 + (CA)n Simple_repeat Simple_repeat 1 144 0 4 2040 227 326 7 7 chr1 190812708 190812844 -6382588 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 2040 252 341 17 0 chr1 190812861 190813034 -6382398 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 2040 1573 207 106 5 chr1 190813842 190814221 -6381211 - MTD LTR MaLR -2 417 1 4 2040 1681 16 5 5 chr1 190814258 190814451 -6380981 + B2_Mm1a SINE B2 1 193 0 4 2040 457 317 124 34 chr1 190814851 190815142 -6380290 + Charlie1a DNA MER1_type 525 841 -614 4 2040 245 222 89 122 chr1 190815384 190815507 -6379925 + B4A SINE B4 2 120 -172 4 2040 341 299 66 77 chr1 190815647 190815828 -6379604 + B4A SINE B4 100 278 -14 4 2040 562 225 123 46 chr1 190815910 190816171 -6379261 + Charlie1a DNA MER1_type 1169 1449 -6 4 2040 1589 146 17 51 chr1 190816861 190816944 -6378488 + RLTR11B LTR ERVK 137 215 -238 4 2040 213 65 0 0 chr1 190816944 190816975 -6378457 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 4 2040 1589 146 17 51 chr1 190816975 190817187 -6378245 + RLTR11B LTR ERVK 216 422 -31 4 2040 24 32 0 0 chr1 190819564 190819595 -6375837 + AT_rich Low_complexity Low_complexity 1 31 0 4 2040 337 308 24 57 chr1 190819835 190819959 -6375473 + MER58B DNA MER1_type 217 336 -5 4 2040 185 280 0 20 chr1 190821209 190821260 -6374172 + MIRm SINE MIR 135 184 -92 4 2040 1629 26 21 0 chr1 190821402 190821591 -6373841 + B2_Mm1a SINE B2 1 193 0 4 2040 700 232 26 51 chr1 190821597 190821792 -6373640 + B3 SINE B2 27 216 0 4 2040 214 318 131 37 chr1 190822328 190822573 -6372859 + B4A SINE B4 25 292 0 4 2040 21 36 0 0 chr1 190823189 190823217 -6372215 + AT_rich Low_complexity Low_complexity 1 28 0 4 2040 384 22 0 0 chr1 190823756 190823801 -6371631 + (GAAAA)n Simple_repeat Simple_repeat 4 48 0 4 2040 248 227 136 0 chr1 190825387 190825453 -6369979 + PB1D10 SINE Alu 1 75 -42 4 2040 236 244 125 25 chr1 190825453 190825467 -6369965 + ID_B1 SINE B4 82 169 -55 4 2040 216 0 0 0 chr1 190825502 190825526 -6369906 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 2040 1187 36 0 0 chr1 190825526 190825664 -6369768 - B1_Mus2 SINE Alu -9 138 1 4 2040 22 35 0 0 chr1 190825674 190825703 -6369729 + AT_rich Low_complexity Low_complexity 1 29 0 4 2040 1021 215 30 5 chr1 190827490 190827691 -6367741 - B3 SINE B2 -10 206 1 4 2040 277 269 50 92 chr1 190827842 190827961 -6367471 + MT2B2 LTR ERVL 150 263 -321 4 2040 408 311 115 0 chr1 190827855 190827868 -6367564 + ID_B1 SINE B4 79 214 -10 4 2040 449 239 184 0 chr1 190827868 190827977 -6367455 + B1F1 SINE Alu 11 139 -10 4 2040 288 316 74 0 chr1 190828201 190828296 -6367136 + MTEb LTR MaLR 22 123 -256 4 2040 801 257 170 0 chr1 190828301 190828577 -6366855 - MTD LTR MaLR -2 417 95 4 2040 395 235 25 0 chr1 190828561 190828642 -6366790 - MTD LTR MaLR -196 223 141 4 2040 259 194 15 46 chr1 190828635 190828700 -6366732 + MTEb LTR MaLR 300 362 -17 4 2040 274 317 0 47 chr1 190829741 190829847 -6365585 - RSINE1 SINE B4 -61 104 4 4 2040 746 218 39 70 chr1 190829883 190830069 -6365363 + B3A SINE B2 2 181 -14 4 2040 435 19 0 0 chr1 190832177 190832229 -6363203 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 2040 231 136 204 0 chr1 190832253 190832297 -6363135 - BC1_Mm scRNA scRNA -99 53 1 4 2040 873 37 0 0 chr1 190832556 190832663 -6362769 - B1_Mm SINE Alu 0 147 41 4 2040 373 226 50 117 chr1 190832559 190832679 -6362753 - B4 SINE B4 -69 223 112 4 2040 444 205 31 100 chr1 190832715 190832845 -6362587 + ID_B1 SINE B4 103 223 -1 4 2040 317 155 0 27 chr1 190832846 190832919 -6362513 + GA-rich Low_complexity Low_complexity 1 71 0 4 2040 1282 101 11 0 chr1 190832955 190833133 -6362299 + B2_Mm1t SINE B2 1 180 -13 4 2040 363 157 321 36 chr1 190833149 190833261 -6362171 + B2_Mm2 SINE B2 47 190 -5 4 2040 250 196 78 0 chr1 190833357 190833408 -6362024 - ID4_ SINE ID -9 74 20 4 2040 1215 96 0 0 chr1 190833621 190833936 -6361496 + (TG)n Simple_repeat Simple_repeat 1 315 0 4 2040 2037 139 91 5 chr1 190833991 190834304 -6361128 - MTC LTR MaLR -5 416 74 4 2040 201 39 0 0 chr1 190834304 190834330 -6361102 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 2040 2037 139 91 5 chr1 190834330 190834399 -6361033 - MTC LTR MaLR -348 73 2 4 2040 2024 134 51 12 chr1 190834547 190834880 -6360552 - RMER19B LTR ERVK 0 902 557 4 2040 672 259 111 21 chr1 190834974 190835163 -6360269 - B3 SINE B2 -8 208 3 4 2040 470 323 105 63 chr1 190835567 190835901 -6359531 + ORR1E LTR MaLR 12 359 0 4 2040 285 225 24 24 chr1 190837006 190837088 -6358344 - MTD LTR MaLR -14 405 297 4 2040 872 301 95 24 chr1 190837079 190837457 -6357975 - MT2A LTR ERVL -85 448 44 4 2040 585 279 44 64 chr1 190837446 190837865 -6357567 + RLTR11B LTR ERVK 88 518 -10 4 2040 297 214 0 0 chr1 190837878 190837934 -6357498 - MT2A LTR ERVL -475 58 3 4 2040 347 278 22 22 chr1 190838226 190838318 -6357114 + B3A SINE B2 98 189 -9 4 2040 330 264 121 63 chr1 190839602 190839808 -6355624 - LTR83 LTR ERVL -418 362 145 4 2040 923 82 8 0 chr1 190839967 190840101 -6355331 - RLTR27 LTR ERVK 0 309 175 4 2040 1945 61 0 0 chr1 190840085 190840346 -6355086 - RLTR10A LTR ERVK -150 261 1 4 2040 327 254 31 62 chr1 190840626 190840756 -6354676 - RCHARR1 DNA MER1_type 0 974 849 4 31 387 276 25 33 chr1 190840764 190840884 -6354548 + RSINE1 SINE B4 11 129 -36 4 2041 207 69 0 0 chr1 190840900 190840929 -6354503 + (TAA)n Simple_repeat Simple_repeat 3 31 0 4 2041 1961 298 93 9 chr1 190840954 190841737 -6353695 - RCHARR1 DNA MER1_type -123 851 3 4 2041 222 339 0 0 chr1 190842388 190842450 -6352982 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 2041 2589 198 0 20 chr1 190842645 190843155 -6352277 - RLTR18B LTR ERVK -9 503 4 4 2041 577 280 29 18 chr1 190843706 190843877 -6351555 - Lx8 LINE L1 -716 6757 6585 4 2041 901 326 92 21 chr1 190843882 190844534 -6350898 + Lx7 LINE L1 6770 7471 -2 4 2041 3779 29 43 15 chr1 190845870 190846332 -6349100 - IAPLTR2_Mm LTR ERVK 0 475 1 4 2041 607 191 63 58 chr1 190846333 190846522 -6348910 + RMER15 LTR ERVL 343 532 -43 4 2041 267 274 0 0 chr1 190847543 190847605 -6347827 - Lx8 LINE L1 -1570 5903 5842 4 2041 438 298 57 70 chr1 190847675 190848061 -6347371 + L1M3 LINE L1 2833 3228 -2915 4 2041 405 39 0 0 chr1 190848097 190848148 -6347284 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 2041 750 155 12 6 chr1 190848148 190848317 -6347115 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 4 2041 1291 219 124 15 chr1 190848319 190848658 -6346774 + ORR1C2 LTR MaLR 1 376 -8 4 2041 1475 282 91 42 chr1 190848660 190849086 -6346346 + L1M3 LINE L1 3244 3685 -2458 4 2041 387 41 0 0 chr1 190849086 190849135 -6346297 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 2041 1475 281 89 41 chr1 190849135 190849262 -6346170 + L1M3 LINE L1 3680 3804 -2336 4 2041 2305 84 69 14 chr1 190849262 190849611 -6345821 - RLTR9A LTR ERVK 0 368 1 4 2041 1475 281 89 41 chr1 190849611 190850098 -6345334 + L1M3 LINE L1 3805 4334 -1806 4 2041 329 122 0 0 chr1 190851648 190851697 -6343735 + B3A SINE B2 3 51 -147 4 2041 180 0 0 0 chr1 190851746 190851766 -6343666 + (A)n Simple_repeat Simple_repeat 1 20 0 4 2041 266 184 20 0 chr1 190851766 190851815 -6343617 + B3A SINE B2 58 107 -91 4 2041 244 269 103 0 chr1 190852196 190852274 -6343158 - MER20 DNA MER1_type 0 219 134 4 2041 342 311 33 0 chr1 190854112 190854234 -6341198 - ID_B1 SINE B4 -1 223 98 4 2041 897 189 0 3 chr1 190854427 190854735 -6340697 + (CA)n Simple_repeat Simple_repeat 1 306 0 4 2041 828 197 0 0 chr1 190855187 190855520 -6339912 + (CA)n Simple_repeat Simple_repeat 1 333 0 4 2041 442 278 130 53 chr1 190855842 190856180 -6339252 + L1MA5 LINE L1 2258 2621 -3522 4 2041 248 208 38 25 chr1 190856539 190856618 -6338814 + L1MA5 LINE L1 5303 5382 -786 4 2041 304 340 25 5 chr1 190857039 190857240 -6338192 + L1MA6 LINE L1 6079 6283 -17 4 2041 1019 288 150 8 chr1 190857296 190857782 -6337650 + L1MA5 LINE L1 5386 5940 -360 4 2041 198 0 0 0 chr1 190859328 190859350 -6336082 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 2041 201 39 0 0 chr1 190859448 190859474 -6335958 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 4 2041 440 156 11 0 chr1 190859745 190859835 -6335597 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 4 2041 640 263 39 17 chr1 190860016 190860081 -6335351 - B3A SINE B2 -16 182 114 4 2041 180 0 0 0 chr1 190860081 190860101 -6335331 + (C)n Simple_repeat Simple_repeat 1 20 0 4 2041 640 263 39 17 chr1 190860101 190860213 -6335219 - B3A SINE B2 -85 113 1 4 2041 328 237 19 171 chr1 190860856 190861014 -6334418 + ID_B1 SINE B4 13 146 -78 4 2041 251 229 100 40 chr1 190860952 190861052 -6334380 + PB1D10 SINE Alu 10 115 -2 4 2041 2558 57 22 12 chr1 190862452 190862774 -6332658 + ORR1A2 LTR MaLR 1 325 -2 4 2041 1581 197 65 8 chr1 190863091 190863460 -6331972 - MTD LTR MaLR -14 405 16 4 2041 814 198 38 0 chr1 190863760 190863917 -6331515 - B3 SINE B2 -51 165 3 4 2041 455 304 51 0 chr1 190864263 190864401 -6331031 + ID_B1 SINE B4 79 223 -1 4 2041 361 311 19 0 chr1 190864550 190864653 -6330779 - PB1D10 SINE Alu -6 111 7 4 2041 228 372 11 15 chr1 190865747 190865913 -6329519 - MIRb SINE MIR -67 201 29 4 2041 289 265 40 87 chr1 190865982 190866131 -6329301 - MLT1K LTR MaLR -5 590 449 4 2041 2234 163 34 15 chr1 190866583 190866993 -6328439 + MTC LTR MaLR 4 421 0 4 2041 257 312 62 27 chr1 190870036 190870148 -6325284 + MLT1G3 LTR MaLR 12 127 -468 4 2041 354 333 110 50 chr1 190870201 190870520 -6324912 + MLT1G3 LTR MaLR 217 554 -25 4 2041 445 248 133 14 chr1 190870697 190870880 -6324552 - B3 SINE B2 -7 188 1 4 2041 939 260 104 29 chr1 190871282 190871571 -6323861 + MTEa LTR MaLR 1 306 -73 4 2041 1883 159 6 55 chr1 190871571 190871917 -6323515 - ORR1A4 LTR MaLR 0 329 1 5 2041 939 260 104 29 chr1 190871917 190871972 -6323460 + MTEa LTR MaLR 307 371 -8 4 2041 1070 208 14 14 chr1 190872838 190873048 -6322384 - B3 SINE B2 -6 210 1 5 2041 459 239 49 42 chr1 190873684 190873828 -6321604 + B3A SINE B2 2 146 -52 5 2041 228 180 20 20 chr1 190874598 190874649 -6320783 + GA-rich Low_complexity Low_complexity 3 53 0 5 2041 867 260 29 9 chr1 190875078 190875288 -6320144 - B3 SINE B2 -1 215 2 5 2041 633 281 145 25 chr1 190876354 190876595 -6318837 + B4 SINE B4 1 270 -22 5 2041 636 111 0 0 chr1 190876595 190876694 -6318738 + (CA)n Simple_repeat Simple_repeat 1 99 0 5 2041 263 244 164 41 chr1 190877305 190877476 -6317956 - ORR1D2 LTR MaLR -29 330 139 5 2041 265 222 12 36 chr1 190877493 190877577 -6317855 - ORR1D2 LTR MaLR -288 82 1 5 2041 953 264 90 33 chr1 190878096 190878429 -6317003 + MTE2b LTR MaLR 28 379 0 5 2041 276 329 0 12 chr1 190879453 190879527 -6315905 + polypyrimidine Low_complexity Low_complexity 15 88 0 5 2041 741 291 10 14 chr1 190879527 190879736 -6315696 - ID_B1 SINE B4 -16 208 1 5 2041 276 329 0 12 chr1 190879736 190879747 -6315685 + polypyrimidine Low_complexity Low_complexity 4 14 0 5 2041 583 255 6 63 chr1 190880655 190880814 -6314618 - RSINE1 SINE B4 0 165 16 5 2041 886 219 10 30 chr1 190881376 190881578 -6313854 + B3A SINE B2 1 198 0 5 2041 508 29 0 28 chr1 190881742 190881814 -6313618 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 5 2041 502 243 9 0 chr1 190881825 190881936 -6313496 - PB1D9 SINE Alu 0 120 9 5 2041 18471 63 26 8 chr1 190882089 190884619 -6310813 - MusHAL1 LINE L1 -4 2708 132 5 2041 3455 18 10 0 chr1 190884874 190885266 -6310166 + MTA_Mm LTR MaLR 1 396 0 5 2041 5407 86 17 4 chr1 190885436 190886182 -6309250 - L1VL4 LINE L1 -5313 989 234 5 2041 201 147 0 0 chr1 190886340 190886374 -6309058 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 2041 228 229 21 0 chr1 190886409 190886457 -6308975 - RSINE1 SINE B4 -29 136 88 5 2041 240 226 32 0 chr1 190886814 190886876 -6308556 - B3 SINE B2 -6 210 147 5 2041 333 323 17 62 chr1 190887141 190887382 -6308050 + RMER2 LTR ERV1 334 563 -4 5 2041 591 208 48 7 chr1 190887387 190887532 -6307900 - B3 SINE B2 -65 151 1 5 2041 567 286 57 44 chr1 190887839 190888066 -6307366 + B4A SINE B4 57 286 -6 5 2041 215 78 78 0 chr1 190888921 190888972 -6306460 + (CCTG)n Simple_repeat Simple_repeat 1 55 0 5 2041 450 269 27 7 chr1 190888978 190889124 -6306308 + CT-rich Low_complexity Low_complexity 1 149 0 5 2041 597 178 86 21 chr1 190889128 190889321 -6306111 - Lx7 LINE L1 -1239 5819 5628 5 2041 449 192 30 20 chr1 190890172 190890273 -6305159 + B1F2 SINE Alu 46 147 -2 5 2041 197 132 0 26 chr1 190890275 190890314 -6305118 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 2041 220 133 0 32 chr1 190890696 190890758 -6304674 + C-rich Low_complexity Low_complexity 2 61 0 5 2041 259 364 42 21 chr1 190892576 190892719 -6302713 - LTR40b LTR ERVL -316 146 1 5 2041 770 59 0 8 chr1 190893644 190893764 -6301668 + L1_Mus4 LINE L1 6518 6636 0 5 2041 360 159 0 0 chr1 190893803 190893866 -6301566 + URR1B DNA MER1_type 110 172 -53 5 2041 1259 34 0 0 chr1 190893937 190894084 -6301348 + B1_Mus2 SINE Alu 1 147 0 5 2041 286 246 0 0 chr1 190894188 190894257 -6301175 - BC1_Mm scRNA scRNA -63 89 21 5 2041 348 207 21 148 chr1 190894857 190894999 -6300433 + MT2B LTR ERVL 141 264 -337 5 2041 963 48 0 0 chr1 190894909 190895034 -6300398 + B1_Mm SINE Alu 23 147 0 5 2041 822 113 0 0 chr1 190896102 190896235 -6299197 + (TTGG)n Simple_repeat Simple_repeat 2 134 0 5 2041 203 179 0 0 chr1 190896241 190896280 -6299152 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 2041 225 311 36 36 chr1 190896974 190897084 -6298348 + ORR1E LTR MaLR 1 110 -249 5 2041 769 140 0 75 chr1 190897187 190897334 -6298098 - RLTR20B3 LTR ERVK 0 577 442 5 2041 936 174 22 18 chr1 190897362 190897584 -6297848 - RLTR20B3 LTR ERVK -257 320 98 5 2041 450 0 0 0 chr1 190897599 190897649 -6297783 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 2041 403 216 20 10 chr1 190897763 190897861 -6297571 - MTEa LTR MaLR -3 376 278 5 2041 1203 255 19 13 chr1 190897875 190898193 -6297239 - MTEa LTR MaLR -58 321 2 5 2041 764 254 28 66 chr1 190899053 190899264 -6296168 - B3A SINE B2 -13 203 1 5 2041 244 320 61 51 chr1 190899306 190899520 -6295912 + L1MEg LINE L1 1130 1345 -4897 5 2041 1830 199 45 16 chr1 190900260 190900685 -6294747 - RMER10A LTR ERVL -5 437 1 5 2041 22 0 0 0 chr1 190900745 190900767 -6294665 + AT_rich Low_complexity Low_complexity 1 22 0 5 2041 666 221 43 43 chr1 190900941 190901102 -6294330 + B3A SINE B2 2 162 -36 5 2041 708 77 0 0 chr1 190901110 190901214 -6294218 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 2041 243 248 87 17 chr1 190901240 190901355 -6294077 + L1MEg LINE L1 2317 2439 -3707 5 2041 4976 45 2 3 chr1 190902695 190903295 -6292137 - L1Md_F2 LINE L1 -12 6570 5972 5 2041 291 54 0 0 chr1 190904585 190904622 -6290810 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 5 2041 249 274 18 36 chr1 190904786 190904896 -6290536 + ORR1E LTR MaLR 2 109 -250 5 2041 225 308 21 52 chr1 190905051 190905147 -6290285 + ORR1E LTR MaLR 287 379 0 5 2041 225 0 0 0 chr1 190905419 190905444 -6289988 + (A)n Simple_repeat Simple_repeat 1 25 0 5 2041 525 200 7 20 chr1 190905670 190905818 -6289614 + GA-rich Low_complexity Low_complexity 4 149 0 5 2041 244 226 0 0 chr1 190906169 190906222 -6289210 + (CATA)n Simple_repeat Simple_repeat 2 54 0 5 2041 325 23 0 22 chr1 190906223 190906268 -6289164 + HAL1-3A_ME LINE L1 1976 2019 -839 5 2041 616 297 0 0 chr1 190906268 190906416 -6289016 + B3A SINE B2 10 157 -41 5 2041 25 0 0 0 chr1 190906448 190906473 -6288959 + AT_rich Low_complexity Low_complexity 1 25 0 5 2041 882 187 0 0 chr1 190906478 190906617 -6288815 - B1_Mur2 SINE Alu -10 139 1 5 2041 375 23 0 0 chr1 190907189 190907233 -6288199 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 2041 360 0 0 0 chr1 190907233 190907272 -6288160 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 2041 654 252 6 36 chr1 190907626 190907791 -6287641 + B3A SINE B2 25 184 -14 5 2041 23 0 0 0 chr1 190907805 190907828 -6287604 + AT_rich Low_complexity Low_complexity 1 23 0 5 2041 4376 193 41 33 chr1 190908002 190909021 -6286411 - RLTR25B LTR ERVK -1 1027 1 5 2041 28 48 0 0 chr1 190909483 190909525 -6285907 + AT_rich Low_complexity Low_complexity 1 42 0 5 2041 353 281 34 7 chr1 190912041 190912188 -6283244 - L1MC LINE L1 -2521 3625 3475 5 2041 603 169 42 8 chr1 190912207 190912326 -6283106 - B1_Mur3 SINE Alu -21 128 6 5 2041 21 36 0 0 chr1 190912383 190912411 -6283021 + AT_rich Low_complexity Low_complexity 1 28 0 5 2041 826 294 14 114 chr1 190912543 190912911 -6282521 - MTEa LTR MaLR -48 331 1 5 2041 364 328 129 15 chr1 190912918 190913258 -6282174 - L1MC LINE L1 -2878 3268 2890 5 2041 198 0 0 0 chr1 190913346 190913368 -6282064 + (TAGTG)n Simple_repeat Simple_repeat 3 24 0 5 2041 523 246 166 11 chr1 190914179 190914360 -6281072 + B3 SINE B2 8 216 0 5 2041 929 273 88 4 chr1 190914987 190915308 -6280124 + ORR1E LTR MaLR 8 374 -5 5 2041 5031 71 35 28 chr1 190916130 190916927 -6278505 - RLTR22_Mus LTR ERVK -1005 803 1 5 2041 754 312 57 39 chr1 190917526 190917913 -6277519 + Lx8 LINE L1 6855 7248 -225 5 2041 2087 168 39 13 chr1 190918470 190918968 -6276464 + RLTR31A_Mm LTR ERVK 2 561 0 5 2041 256 231 143 9 chr1 190920095 190920200 -6275232 - MIRc SINE MIR -110 158 40 5 2041 282 56 0 0 chr1 190920600 190920636 -6274796 + (TTC)n Simple_repeat Simple_repeat 1 36 0 5 2041 498 295 29 0 chr1 190921300 190921439 -6273993 + ID_B1 SINE B4 82 224 0 5 2041 846 66 0 0 chr1 190922097 190922219 -6273213 + (GA)n Simple_repeat Simple_repeat 2 123 0 5 2041 549 293 93 76 chr1 190922988 190923013 -6272419 + ORR1E LTR MaLR 9 46 -313 5 2041 270 0 0 0 chr1 190923013 190923043 -6272389 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 2041 549 293 93 76 chr1 190923043 190923360 -6272072 + ORR1E LTR MaLR 47 357 -2 5 2041 321 228 0 0 chr1 190924550 190924629 -6270803 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 2041 523 268 197 31 chr1 190924685 190925005 -6270427 + Lx9 LINE L1 7241 7613 -31 5 2041 6120 210 39 26 chr1 190925034 190926514 -6268918 + L1_Rod LINE L1 1871 3369 -2478 5 2041 245 242 0 0 chr1 190926533 190926595 -6268837 + L1_Rod LINE L1 5356 5417 -430 5 2041 243 0 0 0 chr1 190926595 190926622 -6268810 + (A)n Simple_repeat Simple_repeat 1 27 0 5 2041 5622 232 97 21 chr1 190926648 190928550 -6266882 + Lx9 LINE L1 5372 7642 -2 5 2041 2025 212 81 127 chr1 190928944 190929793 -6265639 - RLTR22_Mur LTR ERVK -1038 810 1 5 2041 564 263 110 5 chr1 190930885 190931076 -6264356 + B4A SINE B4 9 219 -73 5 2041 533 289 82 21 chr1 190931157 190931351 -6264081 + B3 SINE B2 8 213 -3 5 2041 301 328 161 0 chr1 190931353 190931539 -6263893 - L1MD LINE L1 -1754 4392 4177 5 2041 355 292 60 74 chr1 190931555 190931906 -6263526 - RMER17C LTR ERVK -50 360 15 5 2041 619 307 74 8 chr1 190931949 190932128 -6263304 + MTEa LTR MaLR 18 198 -181 5 2041 699 12 0 0 chr1 190932128 190932208 -6263224 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 2041 619 307 74 8 chr1 190932208 190932271 -6263161 + MTEa LTR MaLR 199 275 -104 5 2041 488 239 95 35 chr1 190933734 190933903 -6261529 - B3A SINE B2 -16 182 4 5 2041 509 297 35 0 chr1 190933927 190934072 -6261360 - ID_B1 SINE B4 -74 150 1 5 2041 859 215 0 60 chr1 190934531 190934749 -6260683 - RMER10B LTR ERVL 0 398 194 5 2041 216 231 0 0 chr1 190934755 190934807 -6260625 + GA-rich Low_complexity Low_complexity 3 54 0 5 2041 469 252 28 14 chr1 190934807 190934948 -6260484 - RMER10B LTR ERVL -133 265 123 5 2041 468 0 0 0 chr1 190935474 190935526 -6259906 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 2041 918 130 223 0 chr1 190935751 190935935 -6259497 - URR1B DNA MER1_type 0 225 1 5 2041 444 242 0 10 chr1 190936078 190936174 -6259258 - B3A SINE B2 -102 96 2 6 2041 202 143 20 20 chr1 190936283 190936333 -6259099 + T-rich Low_complexity Low_complexity 3 52 0 6 2041 511 287 8 0 chr1 190937019 190937148 -6258284 - B1F1 SINE Alu -10 139 10 6 2041 876 254 29 0 chr1 190939282 190939491 -6255941 - B3 SINE B2 0 216 2 6 2041 414 0 0 0 chr1 190939504 190939550 -6255882 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 2041 231 88 0 0 chr1 190939550 190939583 -6255849 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 2041 1741 265 13 0 chr1 190939583 190939956 -6255476 - Lx6 LINE L1 -47 7413 7036 6 2041 506 272 0 9 chr1 190940293 190940408 -6255024 + PB1D10 SINE Alu 3 116 -1 6 2041 476 240 116 29 chr1 190940678 190940850 -6254582 - B3 SINE B2 -27 189 3 6 2041 1390 81 38 0 chr1 190941565 190941751 -6253681 + B2_Mm2 SINE B2 3 195 0 6 2041 542 138 0 128 chr1 190942631 190942772 -6252660 + Lx5 LINE L1 6843 6965 -85 6 2041 22 35 0 0 chr1 190942865 190942894 -6252538 + AT_rich Low_complexity Low_complexity 1 29 0 6 2041 568 245 90 5 chr1 190942894 190943090 -6252342 + Lx9 LINE L1 6891 7234 -410 6 2041 1011 256 98 23 chr1 190943191 190943630 -6251802 + Lx9 LINE L1 7154 7625 -19 6 2041 28 0 0 0 chr1 190943646 190943674 -6251758 + AT_rich Low_complexity Low_complexity 1 28 0 6 2041 635 332 100 31 chr1 190944192 190944652 -6250780 - ERVL-E-int LTR ERVL -1745 3969 3402 6 2041 2360 156 3 3 chr1 190944832 190945224 -6250208 - Lx LINE L1 -10 6644 6253 6 2041 311 275 63 42 chr1 190945427 190945522 -6249910 - ERVL-E-int LTR ERVL -2775 2939 2843 6 2041 271 279 0 0 chr1 190945573 190945634 -6249798 - ERVL-E-int LTR ERVL -2977 2690 2630 6 2041 423 327 74 70 chr1 190946141 190946371 -6249061 + B4 SINE B4 44 274 -18 6 2041 919 299 62 25 chr1 190946538 190946974 -6248458 - L1_Mur3 LINE L1 -745 5135 4684 6 2041 551 213 0 7 chr1 190947666 190947803 -6247629 + GA-rich Low_complexity Low_complexity 3 138 0 6 2041 412 293 31 25 chr1 190947966 190948127 -6247305 - RSINE1 SINE B4 -1 164 3 6 2041 339 262 30 68 chr1 190948965 190949202 -6246230 - L1PB4 LINE L1 -411 5831 5586 6 2041 292 289 48 0 chr1 190949680 190949784 -6245648 - L1M4b LINE L1 -5751 1583 1475 6 2041 456 279 144 25 chr1 190951052 190951295 -6244137 - MLT2C2 LTR ERVL -187 277 6 6 2041 3946 131 22 52 chr1 190951511 190952283 -6243149 - RMER17A LTR ERVK -2 749 1 6 2041 245 224 0 0 chr1 190952600 190952649 -6242783 + PB1 SINE Alu 73 121 -6 6 2041 551 351 58 19 chr1 190952833 190953094 -6242338 - B4A SINE B4 0 292 22 6 2041 211 339 0 0 chr1 190953124 190953180 -6242252 - ID_B1 SINE B4 -106 118 63 6 2041 393 261 16 70 chr1 190953441 190953569 -6241863 - B4A SINE B4 -170 122 2 6 2041 1083 93 12 6 chr1 190954581 190954753 -6240679 + (GGAGA)n Simple_repeat Simple_repeat 1 173 0 6 2041 404 265 164 15 chr1 190954763 190954897 -6240535 - B3 SINE B2 -61 155 2 6 2041 252 339 129 0 chr1 190955239 190955410 -6240022 - RLTR25A LTR ERVK 0 1103 911 6 2041 739 316 22 15 chr1 190956528 190956801 -6238631 + B4A SINE B4 5 279 -13 6 2041 429 20 0 0 chr1 190957121 190957171 -6238261 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 6 2041 309 242 71 0 chr1 190957681 190957780 -6237652 + MTEa LTR MaLR 21 126 -253 6 2041 693 259 92 28 chr1 190957829 190958079 -6237353 + RLTR16 LTR ERVK 33 298 -207 6 2041 511 231 201 24 chr1 190958319 190958483 -6236949 + MTEa LTR MaLR 187 379 0 6 2041 211 266 202 0 chr1 190960003 190960097 -6235335 - L2 LINE L2 -817 2602 2490 6 2041 183 42 0 0 chr1 190962637 190962661 -6232771 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 2041 1027 42 0 0 chr1 190963377 190963497 -6231935 - L1_Mus1 LINE L1 -343 6224 6105 6 2041 2743 54 11 0 chr1 190963497 190963847 -6231585 + L1_Mus1 LINE L1 6214 6567 0 6 2041 1238 62 56 17 chr1 190964563 190964743 -6230689 + L1_Mus3 LINE L1 6452 6638 0 6 2041 275 351 20 7 chr1 190965699 190965848 -6229584 - Lx8 LINE L1 -292 7181 7031 6 2041 588 119 25 0 chr1 190967620 190967738 -6227694 + (TTCC)n Simple_repeat Simple_repeat 4 124 0 6 2041 247 228 52 17 chr1 190968319 190968377 -6227055 - PB1D7 SINE Alu 0 120 61 6 2041 485 218 0 19 chr1 190968325 190968428 -6227004 - ID_B1 SINE B4 -6 218 118 6 2041 2898 159 15 26 chr1 190968561 190969090 -6226342 + RLTR11A2 LTR ERVK 3 525 -2 6 2041 273 250 0 0 chr1 190970914 190971006 -6224426 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 2041 251 254 43 29 chr1 190971091 190971160 -6224272 - L1M4 LINE L1 -5801 741 672 6 2041 189 74 0 0 chr1 190971846 190971873 -6223559 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 2042 444 37 0 0 chr1 190972125 190972179 -6223253 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 2042 1263 92 3 12 chr1 190972537 190972887 -6222545 + (TTCC)n Simple_repeat Simple_repeat 1 346 0 6 2042 24 0 0 0 chr1 190973243 190973267 -6222165 + AT_rich Low_complexity Low_complexity 1 24 0 6 2042 393 305 24 30 chr1 190973716 190973885 -6221547 + MER5B DNA MER1_type 8 175 -3 6 2042 282 211 0 27 chr1 190973954 190974027 -6221405 + G-rich Low_complexity Low_complexity 2 72 0 6 2042 235 208 21 0 chr1 190974077 190974125 -6221307 + G-rich Low_complexity Low_complexity 2 50 0 6 2042 602 269 14 14 chr1 190974254 190974397 -6221035 + ID_B1 SINE B4 82 224 0 6 2042 224 147 0 0 chr1 190974655 190974689 -6220743 + B3A SINE B2 3 36 -162 6 2042 245 315 0 0 chr1 190974681 190974754 -6220678 + B3 SINE B2 144 216 0 6 2042 266 0 29 0 chr1 190976647 190976681 -6218751 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 2042 2140 169 26 24 chr1 190977477 190977896 -6217536 - RMER19B LTR ERVK -428 474 55 6 2042 684 165 30 0 chr1 190977873 190978006 -6217426 - RMER19B LTR ERVK -765 137 1 6 2042 526 242 108 25 chr1 190978049 190978206 -6217226 + B3 SINE B2 43 212 -4 6 2042 428 276 24 0 chr1 190978814 190978937 -6216495 + B3A SINE B2 2 127 -71 6 2042 334 293 0 10 chr1 190979490 190979590 -6215842 - ID_B1 SINE B4 -6 218 120 6 2042 353 260 31 10 chr1 190979906 190980003 -6215429 - B1F2 SINE Alu -8 141 43 6 2042 741 253 127 40 chr1 190980176 190980510 -6214922 - MTD LTR MaLR -22 397 51 6 2042 3021 113 13 17 chr1 190980510 190980971 -6214461 - RMER6B LTR ERVK -2 459 1 6 2042 631 263 30 127 chr1 190980971 190981013 -6214419 - MTD LTR MaLR -369 52 18 6 2042 935 143 191 0 chr1 190982286 190982475 -6212957 - URR1B DNA MER1_type 0 225 1 6 2042 3632 28 28 12 chr1 190983324 190983753 -6211679 + RLTR10C LTR ERVK 1 436 0 6 2042 567 253 4 8 chr1 190984251 190984503 -6210929 + CT-rich Low_complexity Low_complexity 1 250 0 6 2042 323 306 25 2 chr1 190984620 190984727 -6210705 + PB1D7 SINE Alu 1 109 -11 6 2042 422 261 164 48 chr1 190985126 190985280 -6210152 + B3 SINE B2 4 179 -37 6 2042 1302 96 0 0 chr1 190985280 190985582 -6209850 + (CA)n Simple_repeat Simple_repeat 1 302 0 6 2042 422 261 164 48 chr1 190985582 190985615 -6209817 + B3 SINE B2 180 213 -3 6 2042 523 321 113 34 chr1 190986950 190987880 -6207552 - L1MCa LINE L1 -5343 1408 322 6 2042 240 301 60 0 chr1 190987988 190988071 -6207361 - L1MCa LINE L1 -5882 163 76 6 2042 202 284 45 0 chr1 190988267 190988334 -6207098 - L2a LINE L2 -19 3407 3338 6 2042 655 285 11 6 chr1 190988340 190988520 -6206912 + B3A SINE B2 1 181 -17 6 2042 375 183 0 0 chr1 190988525 190988607 -6206825 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 2042 374 313 200 0 chr1 190988998 190989193 -6206239 - MTE2a LTR MaLR -46 333 100 6 2042 3181 70 2 0 chr1 190990191 190990588 -6204844 + MTB LTR MaLR 1 398 -2 6 2042 2091 131 173 0 chr1 190990635 190990994 -6204438 + MTC LTR MaLR 1 421 0 6 2042 289 256 39 0 chr1 190991837 190991915 -6203517 + PB1D10 SINE Alu 36 116 -1 6 2042 1233 101 0 0 chr1 190993043 190993222 -6202210 + (TTC)n Simple_repeat Simple_repeat 2 180 0 6 2042 1201 43 0 0 chr1 190993222 190993363 -6202069 - B1_Mm SINE Alu -6 141 1 6 2042 2048 104 12 54 chr1 190995402 190995738 -6199694 - RLTRETN_Mm LTR ERVK 0 322 1 6 2042 798 207 19 77 chr1 190999367 190999576 -6195856 - B3A SINE B2 0 198 2 6 2042 237 132 0 0 chr1 191000047 191000085 -6195347 + (CACCAT)n Simple_repeat Simple_repeat 5 42 0 1 2042 477 255 9 9 chr1 191000141 191000252 -6195180 - RSINE1 SINE B4 -42 123 13 2 2042 351 331 24 46 chr1 191001004 191001256 -6194176 + MLT1B LTR MaLR 118 370 -20 3 2042 611 336 27 41 chr1 191002336 191002628 -6192804 + B4A SINE B4 1 288 -4 4 2042 433 296 6 34 chr1 191002665 191002912 -6192520 + (CATA)n Simple_repeat Simple_repeat 1 240 0 5 2042 192 111 0 0 chr1 191003211 191003247 -6192185 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6 2042 408 88 0 0 chr1 191003534 191003591 -6191841 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 2042 559 315 39 5 chr1 191003648 191003852 -6191580 - ID_B1 SINE B4 -12 212 2 8 2042 701 302 48 40 chr1 191004275 191004548 -6190884 + B4A SINE B4 14 288 -4 9 2042 267 31 0 0 chr1 191004587 191004619 -6190813 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 2042 186 71 0 0 chr1 191004822 191004850 -6190582 + (CTATA)n Simple_repeat Simple_repeat 5 32 0 1 2042 618 171 8 8 chr1 191004990 191005120 -6190312 - ORR1C2 LTR MaLR -254 130 1 1 2042 330 282 81 51 chr1 191005540 191005775 -6189657 - L1MA8 LINE L1 -1 6311 6070 1 2042 287 278 39 59 chr1 191005776 191005972 -6189460 - MTEb LTR MaLR -5 374 164 1 2042 311 113 19 0 chr1 191005973 191006026 -6189406 + (CAAG)n Simple_repeat Simple_repeat 2 55 0 1 2042 255 61 0 0 chr1 191006228 191006261 -6189171 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 2042 440 216 31 10 chr1 191006262 191006360 -6189072 - RSINE1 SINE B4 -63 102 3 1 2042 435 266 77 50 chr1 191006407 191006654 -6188778 - L1MA8 LINE L1 -250 6062 5804 1 2042 363 267 43 30 chr1 191007387 191007519 -6187913 - B1F1 SINE Alu -3 146 15 1 2042 1024 261 63 37 chr1 191007932 191008282 -6187150 - MTEa LTR MaLR -20 359 1 1 2042 213 39 0 0 chr1 191008352 191008378 -6187054 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 2042 355 345 82 11 chr1 191008609 191008876 -6186556 + RMER15 LTR ERVL 276 561 -14 2 2042 830 250 32 0 chr1 191010108 191010296 -6185136 + B3 SINE B2 18 211 -5 2 2042 216 0 0 0 chr1 191010844 191010868 -6184564 + (G)n Simple_repeat Simple_repeat 1 24 0 2 2042 238 327 40 0 chr1 191010998 191011099 -6184333 + MIRb SINE MIR 128 232 -36 2 2042 272 143 53 9 chr1 191012571 191012684 -6182748 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 2042 403 160 0 54 chr1 191013158 191013244 -6182188 + MTD LTR MaLR 300 419 0 2 2042 322 271 62 10 chr1 191013311 191013408 -6182024 + RSINE1 SINE B4 62 163 -2 2 2042 492 253 65 18 chr1 191014412 191014581 -6180851 - MTE2b LTR MaLR -8 371 195 2 2042 539 219 26 0 chr1 191015413 191015527 -6179905 + RSINE1 SINE B4 8 124 -41 2 2042 408 55 0 0 chr1 191015527 191015582 -6179850 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 2042 510 209 99 50 chr1 191016158 191016359 -6179073 - B3 SINE B2 -5 211 1 3 2042 496 349 108 19 chr1 191016737 191017093 -6178339 + LTR16B1 LTR ERVL 18 405 -75 3 2042 410 302 101 32 chr1 191017093 191017312 -6178120 + MLT1C LTR MaLR 1 234 -233 3 2042 555 287 152 0 chr1 191017398 191017621 -6177811 - MTE2b LTR MaLR 0 379 123 3 2042 215 368 66 0 chr1 191017849 191017925 -6177507 + ID4_ SINE ID 1 81 -2 3 2042 22 80 0 0 chr1 191017927 191017977 -6177455 + AT_rich Low_complexity Low_complexity 1 50 0 3 2042 253 304 298 13 chr1 191019520 191019836 -6175596 + MLT1F1 LTR MaLR 64 469 -100 3 2042 234 0 0 0 chr1 191019939 191019965 -6175467 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 3 2042 1011 212 120 61 chr1 191019971 191020313 -6175119 + ORR1D2 LTR MaLR 9 370 0 3 2042 2230 167 12 98 chr1 191021367 191021877 -6173555 + RMER4A LTR ERVK 1 466 0 4 2042 337 323 52 30 chr1 191021955 191022089 -6173343 + MER20 DNA MER1_type 22 158 -61 4 2042 1898 137 96 59 chr1 191022185 191022643 -6172789 - IAPLTR2_Mm LTR ERVK 0 475 1 4 2042 537 16 16 0 chr1 191022643 191022706 -6172726 - IAPEz-int LTR ERVK 0 6481 6418 4 2042 431 272 111 62 chr1 191022783 191022991 -6172441 + Lx8 LINE L1 7172 7389 -84 4 2042 25 0 0 0 chr1 191023035 191023060 -6172372 + AT_rich Low_complexity Low_complexity 1 25 0 4 2042 2314 71 5 100 chr1 191023436 191023826 -6171606 - L1_Mus3 LINE L1 -3 6635 6283 4 2042 420 37 0 0 chr1 191024279 191024333 -6171099 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 2042 1096 108 6 28 chr1 191024345 191024526 -6170906 + B2_Mm2 SINE B2 11 187 -8 4 2042 519 96 0 0 chr1 191024566 191024649 -6170783 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 2042 243 88 0 0 chr1 191024904 191024938 -6170494 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 4 2042 992 139 6 0 chr1 191024938 191025109 -6170323 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 5 2042 218 239 27 53 chr1 191025193 191025268 -6170164 - B4 SINE B4 -218 74 2 5 2042 501 231 195 16 chr1 191025533 191025718 -6169714 + ORR1E LTR MaLR 21 238 -121 5 2042 495 0 0 0 chr1 191025957 191026012 -6169420 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 5 2042 396 215 25 12 chr1 191026069 191026229 -6169203 + (TG)n Simple_repeat Simple_repeat 1 162 0 5 2042 594 223 72 0 chr1 191026243 191026382 -6169050 - RSINE1 SINE B4 -13 152 4 5 2042 246 62 0 0 chr1 191027349 191027381 -6168051 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 2042 396 241 12 0 chr1 191027501 191027584 -6167848 - BC1_Mm scRNA scRNA -68 84 1 5 2042 435 149 0 0 chr1 191027628 191027702 -6167730 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 2042 225 0 0 0 chr1 191028772 191028797 -6166635 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 5 2042 3161 16 0 54 chr1 191029630 191030016 -6165416 + RLTR10B2 LTR ERVK 1 365 0 6 2042 869 288 72 54 chr1 191030616 191030965 -6164467 - ORR1E LTR MaLR 0 359 5 6 2042 289 301 27 0 chr1 191031082 191031155 -6164277 + ID4 SINE ID 2 76 -7 6 2042 288 0 0 0 chr1 191034205 191034237 -6161195 + (T)n Simple_repeat Simple_repeat 1 32 0 6 2042 727 224 57 67 chr1 191034272 191034406 -6161026 + B4 SINE B4 85 214 -78 6 2042 234 91 0 0 chr1 191034406 191034439 -6160993 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 6 2042 727 224 57 67 chr1 191034439 191034514 -6160918 + B4 SINE B4 215 291 -1 6 2042 475 100 44 0 chr1 191034514 191034604 -6160828 + (CACG)n Simple_repeat Simple_repeat 1 94 0 6 2042 764 274 123 45 chr1 191035241 191035574 -6159858 + Lx8 LINE L1 6943 7301 -172 6 2042 1695 194 75 3 chr1 191035961 191036322 -6159110 + MTD LTR MaLR 20 406 -13 6 2042 459 125 0 0 chr1 191037210 191037282 -6158150 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 2042 737 277 130 16 chr1 191037696 191037949 -6157483 + ORR1E LTR MaLR 26 307 -52 7 2042 281 264 11 42 chr1 191037966 191038061 -6157371 + CT-rich Low_complexity Low_complexity 3 94 0 7 2042 927 224 24 10 chr1 191039934 191040141 -6155291 + B3 SINE B2 1 210 -6 7 2042 1123 148 81 5 chr1 191040314 191040524 -6154908 - URR1A DNA MER1_type 0 226 1 7 2042 411 21 0 0 chr1 191040972 191041020 -6154412 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 2042 212 260 92 46 chr1 191041097 191041206 -6154226 + L2 LINE L2 2329 2442 -977 7 2042 414 269 90 94 chr1 191042282 191042483 -6152949 + MTE2a LTR MaLR 72 271 -108 7 2042 29 28 0 0 chr1 191043904 191043940 -6151492 + AT_rich Low_complexity Low_complexity 1 36 0 7 2042 1521 34 6 0 chr1 191046602 191046780 -6148652 + B2_Mm1a SINE B2 1 179 -14 7 2042 1712 146 88 12 chr1 191047216 191047555 -6147877 + MTC LTR MaLR 1 365 -56 7 2042 400 335 19 25 chr1 191047529 191047688 -6147744 - B4A SINE B4 -134 158 1 8 2042 207 259 0 0 chr1 191047910 191047964 -6147468 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 2042 310 250 0 53 chr1 191048375 191048451 -6146981 + B1F2 SINE Alu 1 72 -77 8 2042 308 289 48 34 chr1 191049520 191049667 -6145765 + Charlie7 DNA MER1_type 2101 2249 -363 8 2042 383 204 0 18 chr1 191049670 191049780 -6145652 + (CATATA)n Simple_repeat Simple_repeat 1 108 0 8 2042 203 182 36 18 chr1 191051007 191051063 -6144369 + T-rich Low_complexity Low_complexity 3 59 0 8 2042 639 263 67 12 chr1 191051467 191051673 -6143759 + B3 SINE B2 1 195 0 8 2042 24 0 0 0 chr1 191052003 191052027 -6143405 + AT_rich Low_complexity Low_complexity 1 24 0 8 2042 996 259 61 69 chr1 191053688 191054292 -6141140 + Lx9 LINE L1 5380 6014 -1459 8 2042 732 335 69 18 chr1 191054271 191054663 -6140769 + Lx9 LINE L1 7025 7436 -37 8 2042 419 211 8 84 chr1 191055249 191055368 -6140064 - B1F SINE Alu 0 149 40 8 2042 723 303 32 16 chr1 191056198 191056446 -6138986 + B4A SINE B4 6 257 -35 9 2042 384 22 0 0 chr1 191056448 191056493 -6138939 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 2042 192 125 0 0 chr1 191056522 191056554 -6138878 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 2042 477 0 0 0 chr1 191056559 191056612 -6138820 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 2042 244 266 0 15 chr1 191057499 191057564 -6137868 + (TATG)n Simple_repeat Simple_repeat 2 65 0 9 2042 689 238 40 35 chr1 191057569 191057743 -6137689 - B3A SINE B2 -16 182 8 9 2042 657 227 142 36 chr1 191058219 191058466 -6136966 - B4A SINE B4 -4 288 16 9 2042 408 125 0 0 chr1 191058851 191058915 -6136517 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 2042 230 250 0 19 chr1 191059124 191059177 -6136255 + GA-rich Low_complexity Low_complexity 1 52 0 9 2042 2076 121 46 119 chr1 191059246 191059640 -6135792 + ORR1B2 LTR MaLR 1 365 -2 9 2042 1038 106 0 47 chr1 191063514 191063623 -6131809 + B2_Mm2 SINE B2 1 109 -86 9 2042 3490 28 2 0 chr1 191063623 191064018 -6131414 + MTA_Mm LTR MaLR 1 396 0 1 2042 9083 43 5 1 chr1 191064018 191065112 -6130320 + MTA_Mm-int LTR MaLR 1 1098 0 1 2042 3477 30 2 0 chr1 191065112 191065507 -6129925 + MTA_Mm LTR MaLR 1 396 0 1 2042 1038 106 0 47 chr1 191065507 191065564 -6129868 + B2_Mm2 SINE B2 110 159 -36 9 2042 225 0 0 0 chr1 191065564 191065589 -6129843 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 2042 360 0 0 0 chr1 191065873 191065913 -6129519 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 2042 441 0 0 0 chr1 191065913 191065961 -6129471 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 2042 224 344 0 0 chr1 191066493 191066557 -6128875 - ID4_ SINE ID -11 72 9 1 2042 230 280 134 85 chr1 191067954 191068118 -6127314 + B4A SINE B4 3 174 -118 1 2042 213 235 0 0 chr1 191069189 191069240 -6126192 + A-rich Low_complexity Low_complexity 1 51 0 1 2042 538 295 25 40 chr1 191069720 191069751 -6125681 - B3 SINE B2 -1 215 188 1 2042 225 0 0 0 chr1 191069751 191069776 -6125656 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 2042 638 250 31 25 chr1 191069776 191069942 -6125490 - B3A SINE B2 -29 187 21 1 2042 212 200 0 18 chr1 191070493 191070549 -6124883 + CT-rich Low_complexity Low_complexity 3 57 0 1 2042 330 281 57 46 chr1 191071400 191071575 -6123857 - RMER15 LTR ERVL -92 483 307 1 2042 232 300 14 0 chr1 191071864 191071934 -6123498 - MLT1A1 LTR MaLR -270 138 68 1 2042 705 53 0 0 chr1 191072216 191072310 -6123122 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 2042 318 176 21 105 chr1 191073109 191073300 -6122132 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 1 2042 354 146 55 0 chr1 191073309 191073419 -6122013 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 2042 1070 162 65 20 chr1 191073465 191073666 -6121766 + B3 SINE B2 2 211 -5 1 2042 204 214 32 114 chr1 191073900 191074058 -6121374 + (GTGTG)n Simple_repeat Simple_repeat 1 145 0 1 2042 336 314 38 32 chr1 191074560 191074796 -6120636 + RSINE1 SINE B4 2 241 -51 1 2042 224 186 0 0 chr1 191074769 191074812 -6120620 + RSINE1 SINE B4 75 117 -48 1 2042 468 0 0 0 chr1 191074821 191074873 -6120559 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 2042 285 146 0 0 chr1 191075626 191075674 -6119758 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 2042 221 265 172 74 chr1 191075686 191075729 -6119703 - B3 SINE B2 0 216 180 1 2042 294 87 0 0 chr1 191075729 191075775 -6119657 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 1 2042 221 265 172 74 chr1 191075775 191075894 -6119538 - B3 SINE B2 -37 179 38 1 2042 629 181 91 27 chr1 191077190 191077370 -6118062 - B3 SINE B2 0 216 1 1 2042 531 253 49 49 chr1 191077584 191077767 -6117665 - B3A SINE B2 -15 183 1 1 2042 22 0 0 0 chr1 191078287 191078309 -6117123 + AT_rich Low_complexity Low_complexity 1 22 0 1 2042 370 272 113 9 chr1 191078748 191078863 -6116569 + RSINE1 SINE B4 4 130 -35 1 2042 294 95 0 0 chr1 191078876 191078918 -6116514 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2042 531 232 199 6 chr1 191079228 191079384 -6116048 + B4A SINE B4 107 292 0 1 2042 364 281 33 71 chr1 191079907 191080091 -6115341 + MLT1B LTR MaLR 2 178 -212 1 2042 260 315 76 85 chr1 191081291 191081409 -6114023 - PB1D10 SINE Alu 0 117 1 1 2042 821 198 107 0 chr1 191081749 191081926 -6113506 + B3 SINE B2 15 210 -6 1 2042 554 284 54 22 chr1 191081996 191082246 -6113186 + B4 SINE B4 2 270 -22 1 2042 459 130 0 0 chr1 191082247 191082324 -6113108 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 2042 238 279 16 16 chr1 191084545 191084607 -6110825 - L2b LINE L2 -26 3349 3288 1 2042 949 247 137 15 chr1 191085305 191085642 -6109790 - MTE2a LTR MaLR -1 378 1 1 2042 207 0 0 0 chr1 191085916 191085939 -6109493 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 2042 312 82 32 16 chr1 191086133 191086195 -6109237 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1 2042 305 222 0 31 chr1 191086481 191086574 -6108858 + polypyrimidine Low_complexity Low_complexity 1 90 0 1 2042 441 0 0 0 chr1 191086700 191086749 -6108683 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 2042 1663 57 0 21 chr1 191087355 191087588 -6107844 + MTB LTR MaLR 1 228 -172 1 2042 249 328 0 0 chr1 191087606 191087673 -6107759 + MER63B DNA AcHobo 334 400 -36 1 2042 924 256 73 55 chr1 191087690 191088060 -6107372 + MTE2a LTR MaLR 18 364 -15 1 2042 222 170 21 21 chr1 191088429 191088477 -6106955 + GA-rich Low_complexity Low_complexity 2 49 0 1 2042 552 248 8 8 chr1 191088569 191088703 -6106729 + MTE2a LTR MaLR 57 190 -189 1 2042 1239 267 35 29 chr1 191088764 191089138 -6106294 + MTE2a LTR MaLR 4 379 0 1 2042 1904 297 68 50 chr1 191089241 191090081 -6105351 + Lx8 LINE L1 6021 6875 -598 1 2042 535 306 75 53 chr1 191090088 191090543 -6104889 + Lx8 LINE L1 7008 7472 -1 1 2042 28 0 0 0 chr1 191090543 191090571 -6104861 + AT_rich Low_complexity Low_complexity 1 28 0 1 2042 296 278 118 8 chr1 191091054 191091181 -6104251 + B4A SINE B4 130 270 -22 1 2042 324 0 0 0 chr1 191091198 191091234 -6104198 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 2042 308 24 0 24 chr1 191091249 191091291 -6104141 + (GGGGA)n Simple_repeat Simple_repeat 1 41 0 1 2042 2587 20 0 0 chr1 191091291 191091586 -6103846 + RLTR10-int LTR ERVK 1307 1601 -386 1 2042 1106 299 74 34 chr1 191091729 191092377 -6103055 + Lx9 LINE L1 6953 7626 -18 1 2042 295 288 32 105 chr1 191093519 191093643 -6101789 + PB1D10 SINE Alu 3 117 0 1 2042 493 262 24 30 chr1 191094539 191094704 -6100728 - ORR1E LTR MaLR -166 193 30 1 2042 381 22 0 0 chr1 191095241 191095287 -6100145 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 2042 4431 176 42 14 chr1 191095579 191096468 -6098964 + RMER12B LTR ERVK 1 914 -490 1 2042 240 35 0 0 chr1 191096468 191096497 -6098935 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 2042 834 210 49 40 chr1 191096516 191096739 -6098693 + RLTR21 LTR ERVK 1306 1530 -42 1 2042 286 89 0 0 chr1 191096902 191096947 -6098485 - B1_Mus2 SINE Alu 0 147 103 1 2042 210 179 0 0 chr1 191098100 191098156 -6097276 + (ATG)n Simple_repeat Simple_repeat 1 56 0 1 2042 256 308 49 16 chr1 191098989 191099111 -6096321 + MTD LTR MaLR 6 131 -288 1 2042 375 292 105 77 chr1 191099984 191100326 -6095106 + ORR1E LTR MaLR 18 374 -5 1 2042 2073 197 20 76 chr1 191100496 191101090 -6094342 + RLTR31_Mm LTR ERVK 1 561 0 1 2042 238 188 47 0 chr1 191101124 191101188 -6094244 - Tigger7 DNA MER2_type -122 2369 2303 1 2042 239 250 69 50 chr1 191102398 191102499 -6092933 - RMER12 LTR ERVK -470 852 750 1 2043 293 242 30 0 chr1 191103095 191103161 -6092271 + PB1D10 SINE Alu 42 109 -8 1 2043 26 101 0 0 chr1 191103182 191103271 -6092161 + AT_rich Low_complexity Low_complexity 1 89 0 1 2043 447 306 70 0 chr1 191104083 191104240 -6091192 + B4 SINE B4 2 169 -123 1 2043 855 151 4 9 chr1 191104272 191104739 -6090693 + (CA)n Simple_repeat Simple_repeat 1 464 0 1 2043 1385 223 36 90 chr1 191104939 191105407 -6090025 + Lx9 LINE L1 7159 7601 -43 1 2043 1053 63 0 0 chr1 191105407 191105549 -6089883 + B1_Mm SINE Alu 6 147 0 1 2043 1044 243 88 35 chr1 191105923 191106254 -6089178 - ORR1E LTR MaLR 0 379 3 1 2043 192 231 0 0 chr1 191107001 191107053 -6088379 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1 2043 252 250 0 0 chr1 191107106 191107154 -6088278 + MurSatRep1 Unknown Unknown 231 278 -1859 1 2043 452 263 25 32 chr1 191107178 191107335 -6088097 + RLTR11A2 LTR ERVK 11 166 -361 1 2043 410 288 49 70 chr1 191107969 191108111 -6087321 + B1_Mur3 SINE Alu 1 139 -10 1 2043 23 0 0 0 chr1 191108113 191108136 -6087296 + AT_rich Low_complexity Low_complexity 1 23 0 1 2043 2113 286 72 45 chr1 191108273 191109154 -6086278 + MYSERV6-int LTR ERVK 4270 5123 -1427 1 2043 260 306 78 42 chr1 191109158 191109325 -6086107 + RMER4A LTR ERVK 251 423 -43 1 2043 3499 211 68 27 chr1 191109327 191110344 -6085088 + MYSERV6-int LTR ERVK 7813 8782 -177 1 2043 875 203 15 30 chr1 191110518 191110716 -6084716 + MYSERV-int LTR ERVK 6354 6548 -2 1 2043 1260 255 22 79 chr1 191110717 191111211 -6084221 + RLTR11A2 LTR ERVK 1 466 -61 1 2043 185 166 47 20 chr1 191111309 191111457 -6083975 + (TA)n Simple_repeat Simple_repeat 1 152 0 1 2043 262 378 26 83 chr1 191111673 191111829 -6083603 - B4A SINE B4 -144 148 2 1 2043 999 225 34 0 chr1 191112542 191112751 -6082681 - B3 SINE B2 0 216 1 1 2043 393 175 29 0 chr1 191113175 191113278 -6082154 + CT-rich Low_complexity Low_complexity 1 106 0 1 2043 620 167 8 0 chr1 191113918 191114038 -6081394 + CT-rich Low_complexity Low_complexity 2 122 0 1 2043 488 210 11 33 chr1 191114069 191114251 -6081181 + CT-rich Low_complexity Low_complexity 1 178 0 1 2043 620 213 77 49 chr1 191116713 191116896 -6078536 - B3A SINE B2 -7 191 4 1 2043 196 306 99 27 chr1 191116896 191117007 -6078425 - L2a LINE L2 -8 3418 3300 1 2043 3222 81 7 2 chr1 191120307 191120738 -6074694 + Lx LINE L1 6207 6639 -15 1 2043 527 190 0 62 chr1 191121292 191121424 -6074008 - PB1D10 SINE Alu 0 117 1 1 2043 367 308 13 27 chr1 191122095 191122245 -6073187 + B1F SINE Alu 2 149 0 1 2043 477 76 0 0 chr1 191122265 191122331 -6073101 + (GGA)n Simple_repeat Simple_repeat 3 68 0 1 2043 210 118 0 0 chr1 191122623 191122657 -6072775 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 1 2043 399 68 0 0 chr1 191122659 191122718 -6072714 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 2043 523 210 11 0 chr1 191122747 191122923 -6072509 + CT-rich Low_complexity Low_complexity 1 178 0 1 2043 374 267 167 33 chr1 191123250 191123636 -6071796 - Charlie1b DNA MER1_type -3 520 78 1 2043 572 209 45 0 chr1 191123645 191123779 -6071653 + B3A SINE B2 15 154 -44 1 2043 501 47 0 0 chr1 191123779 191123843 -6071589 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 2043 45 69 0 0 chr1 191124221 191124308 -6071124 + AT_rich Low_complexity Low_complexity 1 87 0 1 2043 206 93 22 65 chr1 191124308 191124354 -6071078 + A-rich Low_complexity Low_complexity 4 47 0 1 2043 539 286 45 0 chr1 191124380 191124534 -6070898 + B3A SINE B2 2 162 -36 1 2043 510 125 0 0 chr1 191124535 191124615 -6070817 + (GGA)n Simple_repeat Simple_repeat 2 81 0 2 2043 693 182 18 12 chr1 191124608 191124775 -6070657 + GA-rich Low_complexity Low_complexity 4 171 0 2 2043 612 193 11 22 chr1 191124789 191124827 -6070605 + polypurine Low_complexity Low_complexity 1 37 0 2 2043 975 151 11 22 chr1 191124827 191125149 -6070283 + GA-rich Low_complexity Low_complexity 1 318 0 2 2043 610 272 0 0 chr1 191125612 191125737 -6069695 + B4A SINE B4 164 288 -4 2 2043 384 119 0 0 chr1 191125742 191125801 -6069631 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 2043 498 269 0 92 chr1 191126062 191126246 -6069186 + ID_B1 SINE B4 1 167 -57 2 2043 670 313 40 12 chr1 191126798 191127049 -6068383 - B4A SINE B4 -6 286 29 2 2043 1324 231 91 10 chr1 191127049 191127514 -6067918 - RMER20B LTR ERVK 0 516 1 2 2043 786 192 27 85 chr1 191127734 191127922 -6067510 - B3A SINE B2 -16 182 6 2 2043 400 279 75 26 chr1 191128557 191128785 -6066647 - Lx7 LINE L1 0 7696 7458 2 2043 572 173 0 35 chr1 191128788 191128932 -6066500 + G-rich Low_complexity Low_complexity 4 142 0 2 2043 1133 285 100 26 chr1 191128998 191129427 -6066005 - Lx7 LINE L1 -398 7298 6838 2 2043 198 0 0 0 chr1 191129960 191129982 -6065450 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 2 2043 801 259 19 14 chr1 191130264 191130472 -6064960 - B3 SINE B2 -6 210 2 2 2043 6140 31 48 1 chr1 191130594 191131344 -6064088 + L1Md_F3 LINE L1 5800 6584 0 2 2043 293 314 90 78 chr1 191131663 191131829 -6063603 + RMER5 LTR ERV1 1 168 -366 2 2043 310 237 146 73 chr1 191131956 191132120 -6063312 + RMER5 LTR ERV1 341 516 -18 2 2043 21 0 0 0 chr1 191132943 191132964 -6062468 + AT_rich Low_complexity Low_complexity 1 21 0 2 2043 886 240 34 10 chr1 191133583 191133789 -6061643 - B3 SINE B2 -5 211 1 2 2043 501 248 7 29 chr1 191133795 191133932 -6061500 - B1_Mur2 SINE Alu -5 144 11 2 2043 563 239 22 7 chr1 191134627 191134762 -6060670 + ID_B1 SINE B4 86 222 -2 2 2043 9434 116 14 4 chr1 191134969 191136425 -6059007 + L1_Mm LINE L1 2416 3886 -1997 2 2043 7722 66 31 2 chr1 191136426 191137426 -6058006 + L1_Mus3 LINE L1 5598 6626 -12 2 2043 363 228 0 0 chr1 191138104 191138196 -6057236 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 2043 477 0 0 0 chr1 191139359 191139412 -6056020 + (TAA)n Simple_repeat Simple_repeat 3 55 0 2 2043 226 284 15 0 chr1 191139557 191139624 -6055808 + L1MB1 LINE L1 264 331 -5736 2 2043 351 0 0 0 chr1 191139764 191139803 -6055629 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 2043 250 293 111 20 chr1 191140378 191140531 -6054901 + L1MB1 LINE L1 1247 1413 -4654 2 2043 789 236 67 0 chr1 191140588 191140796 -6054636 + L1MB1 LINE L1 4019 4240 -1900 2 2043 399 281 172 4 chr1 191140798 191141048 -6054384 + B4A SINE B4 1 292 0 2 2043 566 155 17 23 chr1 191141061 191141233 -6054199 + (CA)n Simple_repeat Simple_repeat 2 172 0 2 2043 423 191 31 6 chr1 191141254 191141417 -6054015 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 2043 357 342 71 11 chr1 191141504 191141770 -6053662 + L1MC1 LINE L1 6033 6314 -19 2 2043 568 267 87 37 chr1 191141837 191142078 -6053354 + L1MB1 LINE L1 4752 5004 -1136 2 2043 576 309 62 36 chr1 191142194 191142469 -6052963 + B4A SINE B4 1 282 -10 2 2043 388 258 0 22 chr1 191142474 191142565 -6052867 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 2 2043 428 263 143 0 chr1 191142586 191142761 -6052671 + L1MB1 LINE L1 5170 5369 -771 2 2043 269 200 43 76 chr1 191142804 191142896 -6052536 - ID_B1 SINE B4 -121 103 15 2 2043 397 323 114 52 chr1 191143084 191143485 -6051947 + L1MB1 LINE L1 5629 6056 -112 2 2043 1092 144 36 21 chr1 191143485 191143677 -6051755 + B2_Mm2 SINE B2 1 195 0 2 2043 397 323 114 52 chr1 191143677 191143722 -6051710 + L1MB1 LINE L1 6057 6103 -65 2 2043 308 187 54 11 chr1 191143817 191143909 -6051523 + L1MB2 LINE L1 6074 6169 -2 2 2043 249 159 0 0 chr1 191144028 191144072 -6051360 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 2 2043 513 0 0 0 chr1 191144072 191144129 -6051303 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 2043 249 266 16 0 chr1 191144271 191144335 -6051097 - L1M3d LINE L1 -5739 152 88 2 2043 25 0 0 0 chr1 191144882 191144907 -6050525 + AT_rich Low_complexity Low_complexity 1 25 0 2 2043 280 236 12 134 chr1 191145058 191145179 -6050253 - B1F SINE Alu 0 120 12 2 2043 22 0 0 0 chr1 191146449 191146471 -6048961 + AT_rich Low_complexity Low_complexity 1 22 0 2 2043 453 36 0 0 chr1 191147453 191147508 -6047924 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 2 2043 2330 168 148 10 chr1 191149592 191150085 -6045347 + RLTR31_Mm LTR ERVK 1 561 0 2 2043 452 259 24 37 chr1 191150447 191150611 -6044821 + RSINE1 SINE B4 4 165 0 2 2043 840 45 0 143 chr1 191150627 191150837 -6044595 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 2043 220 271 0 0 chr1 191151550 191151609 -6043823 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 2043 556 228 25 4 chr1 191151627 191151758 -6043674 + RLTR16 LTR ERVK 6 162 -406 2 2043 432 91 0 0 chr1 191151758 191151824 -6043608 + (CAGAGA)n Simple_repeat Simple_repeat 3 68 0 2 2043 471 190 0 0 chr1 191151829 191151966 -6043466 + GA-rich Low_complexity Low_complexity 2 138 0 2 2043 1026 287 40 26 chr1 191151966 191152345 -6043087 + RLTR16 LTR ERVK 119 502 -3 2 2043 405 0 0 0 chr1 191152345 191152390 -6043042 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 2043 292 73 16 127 chr1 191153012 191153075 -6042357 - B1_Mm SINE Alu -1 146 91 2 2043 483 232 35 28 chr1 191153103 191153245 -6042187 + B4 SINE B4 2 144 -148 2 2043 395 0 0 163 chr1 191153247 191153462 -6041970 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 2 2043 545 263 31 19 chr1 191153489 191153648 -6041784 + B4 SINE B4 127 287 -5 2 2043 266 197 16 32 chr1 191154997 191155060 -6040372 + CT-rich Low_complexity Low_complexity 4 65 0 2 2043 1787 216 35 3 chr1 191155419 191155791 -6039641 - MTD LTR MaLR -31 388 5 2 2043 362 329 44 24 chr1 191157109 191157358 -6038074 + L2 LINE L2 2211 2464 -955 2 2043 963 188 39 34 chr1 191157513 191157717 -6037715 + B3 SINE B2 11 215 -1 2 2043 924 296 20 80 chr1 191157726 191158078 -6037354 - MTE2a LTR MaLR -43 336 6 2 2043 861 274 63 104 chr1 191158812 191159207 -6036225 + MTE2a LTR MaLR 1 379 0 2 2043 333 0 0 0 chr1 191164152 191164189 -6031243 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 2043 488 59 15 0 chr1 191166036 191166104 -6029328 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 2 2043 189 0 0 0 chr1 191166987 191167008 -6028424 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 2043 618 142 31 0 chr1 191167024 191167151 -6028281 + CT-rich Low_complexity Low_complexity 3 133 0 2 2043 273 119 0 0 chr1 191168957 191168999 -6026433 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 2043 696 262 19 5 chr1 191170079 191170290 -6025142 + B3 SINE B2 1 214 -2 2 2043 336 122 6 99 chr1 191171127 191171309 -6024123 + (TATG)n Simple_repeat Simple_repeat 1 165 0 2 2043 1255 107 6 6 chr1 191172211 191172390 -6023042 + B2_Mm2 SINE B2 1 179 -16 2 2043 513 0 0 0 chr1 191172394 191172451 -6022981 + (GAAAA)n Simple_repeat Simple_repeat 2 58 0 2 2043 234 0 0 0 chr1 191172472 191172498 -6022934 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 2043 256 363 59 12 chr1 191172606 191172776 -6022656 - MER5A DNA MER1_type -10 179 2 2 2043 1506 229 26 9 chr1 191172982 191173330 -6022102 - ORR1D2 LTR MaLR -2 368 15 2 2043 277 315 0 53 chr1 191174054 191174168 -6021264 + GA-rich Low_complexity Low_complexity 3 110 0 2 2043 207 0 0 0 chr1 191174657 191174680 -6020752 + (A)n Simple_repeat Simple_repeat 1 23 0 2 2043 369 279 103 106 chr1 191174706 191175094 -6020338 - MLT1C LTR MaLR -80 387 1 2 2043 250 349 39 23 chr1 191175309 191175438 -6019994 - MER102a DNA MER1_type -109 221 91 2 2043 2002 181 36 0 chr1 191178547 191178912 -6016520 - ORR1C1 LTR MaLR 0 378 1 2 2043 405 0 0 0 chr1 191179269 191179314 -6016118 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 2043 538 239 26 0 chr1 191179314 191179431 -6016001 - RSINE1 SINE B4 -41 124 5 2 2043 299 302 34 0 chr1 191179733 191179852 -6015580 + L1M1 LINE L1 5739 5861 -439 2 2043 507 138 0 0 chr1 191179980 191180067 -6015365 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 2 2043 688 276 58 138 chr1 191180411 191180789 -6014643 - ORR1E LTR MaLR -8 351 4 2 2043 391 285 53 102 chr1 191181236 191181482 -6013950 - RMER2 LTR ERV1 0 567 334 2 2043 1491 215 76 13 chr1 191181964 191182345 -6013087 - MTD LTR MaLR 0 419 15 2 2043 209 191 0 0 chr1 191184416 191184458 -6010974 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 2043 524 305 232 5 chr1 191184472 191184696 -6010736 - B4A SINE B4 -14 278 4 2 2043 629 266 28 7 chr1 191185362 191185506 -6009926 + RSINE1 SINE B4 2 148 -17 2 2043 229 299 0 0 chr1 191185848 191185915 -6009517 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 2043 360 0 0 0 chr1 191187487 191187527 -6007905 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 2043 903 205 87 5 chr1 191188431 191188627 -6006805 - B3 SINE B2 -3 213 2 2 2043 3444 152 175 5 chr1 191188710 191189226 -6006206 + RMER13B LTR ERVK 1 588 -320 2 2043 222 37 0 0 chr1 191189226 191189253 -6006179 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 2043 3444 152 175 5 chr1 191189253 191189484 -6005948 + RMER13B LTR ERVK 589 874 -34 2 2043 1425 226 67 10 chr1 191189509 191189898 -6005534 - MTD LTR MaLR -3 416 6 2 2043 213 319 67 25 chr1 191190737 191190856 -6004576 - MIRb SINE MIR -132 136 13 2 2043 337 320 57 17 chr1 191191558 191191733 -6003699 - MTEb LTR MaLR -197 182 1 2 2043 865 245 88 8 chr1 191192225 191192464 -6002968 - B4 SINE B4 -10 282 25 2 2043 459 317 41 128 chr1 191192684 191193003 -6002429 - B4A SINE B4 0 292 2 2 2043 838 217 19 48 chr1 191193258 191193466 -6001966 + B3 SINE B2 1 202 -14 2 2043 214 132 53 0 chr1 191193467 191193505 -6001927 + (TATG)n Simple_repeat Simple_repeat 3 42 0 2 2043 250 247 3 65 chr1 191194375 191194718 -6000714 + G-rich Low_complexity Low_complexity 1 321 0 2 2043 976 211 29 0 chr1 191195264 191195468 -5999964 - B3 SINE B2 -1 215 6 2 2043 354 45 0 0 chr1 191196758 191196802 -5998630 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 2043 402 254 71 8 chr1 191196996 191197123 -5998309 + MTE2a LTR MaLR 3 137 -242 3 2043 385 314 57 31 chr1 191197123 191197190 -5998242 + MT2A LTR ERVL 3 201 -332 3 2043 231 172 43 11 chr1 191197192 191197286 -5998146 + (TCTG)n Simple_repeat Simple_repeat 2 98 0 3 2043 236 246 45 15 chr1 191197409 191197475 -5997957 + MTE2a LTR MaLR 271 338 -21 3 2043 318 322 118 21 chr1 191198860 191199047 -5996385 + L1MD3 LINE L1 3244 3448 -2698 3 2043 928 251 63 22 chr1 191199276 191199545 -5995887 + B4A SINE B4 13 292 0 3 2043 530 203 4 0 chr1 191199583 191199836 -5995596 + (CA)n Simple_repeat Simple_repeat 1 254 0 3 2043 221 239 18 35 chr1 191199941 191200054 -5995378 + GA-rich Low_complexity Low_complexity 2 112 0 3 2043 287 244 58 50 chr1 191200136 191200283 -5995149 + L1MD3 LINE L1 3808 3955 -2191 3 2043 213 275 24 36 chr1 191200402 191200485 -5994947 - B4 SINE B4 -209 83 2 3 2043 390 313 309 30 chr1 191200642 191201097 -5994335 + L1MD3 LINE L1 4249 4829 -1317 3 2043 500 0 17 0 chr1 191201097 191201157 -5994275 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 2043 390 368 142 15 chr1 191201157 191201565 -5993867 + L1MD3 LINE L1 4830 5290 -856 3 2043 232 282 0 14 chr1 191201657 191201729 -5993703 + L1MD3 LINE L1 5595 5665 -514 3 2043 300 265 179 0 chr1 191201742 191201859 -5993573 + B4 SINE B4 2 139 -153 3 2043 2240 307 95 20 chr1 191202017 191202997 -5992435 + Lx8 LINE L1 6419 7471 -2 3 2043 400 347 81 12 chr1 191202995 191203316 -5992116 + L1MD3 LINE L1 5652 5994 -2001 3 2043 465 180 0 0 chr1 191204073 191204162 -5991270 + GA-rich Low_complexity Low_complexity 2 90 0 3 2043 337 345 39 28 chr1 191204422 191204671 -5990761 + L1M5 LINE L1 5218 5467 -657 3 2043 199 0 65 0 chr1 191204683 191204714 -5990718 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 2043 2657 206 120 19 chr1 191204969 191205369 -5990063 + RMER17B LTR ERVK 5 416 -542 3 2043 1364 51 6 0 chr1 191205369 191205546 -5989886 + (TCTCCC)n Simple_repeat Simple_repeat 1 178 0 3 2043 2657 206 120 19 chr1 191205546 191205951 -5989481 + RMER17B LTR ERVK 417 891 -67 3 2043 320 321 115 37 chr1 191206108 191206299 -5989133 + Lx8 LINE L1 7079 7284 -189 3 2043 909 150 98 54 chr1 191206470 191206674 -5988758 - MTC LTR MaLR -1 420 208 3 2043 466 303 22 29 chr1 191206675 191206811 -5988621 + B3 SINE B2 82 216 0 3 2043 224 347 20 0 chr1 191206992 191207090 -5988342 - MIR SINE MIR -44 218 119 3 2043 232 200 20 0 chr1 191207281 191207331 -5988101 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 3 2043 578 299 58 5 chr1 191207450 191207655 -5987777 - ID_B1 SINE B4 -8 216 1 3 2043 26 64 0 0 chr1 191209958 191210005 -5985427 + AT_rich Low_complexity Low_complexity 1 47 0 3 2043 2531 293 46 24 chr1 191210298 191211131 -5984301 + Lx8 LINE L1 6171 7021 -452 3 2043 405 339 129 43 chr1 191211644 191212342 -5983090 + L1MD LINE L1 3640 4376 -1770 3 2043 3927 98 69 7 chr1 191212342 191212907 -5982525 - MT2B LTR ERVL 0 601 2 3 2043 405 339 129 43 chr1 191212907 191213071 -5982361 + L1MD LINE L1 4377 4576 -1570 3 2043 323 328 48 52 chr1 191213152 191213403 -5982029 + B4A SINE B4 3 252 -40 3 2043 378 0 0 0 chr1 191213418 191213460 -5981972 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 2043 256 284 20 82 chr1 191213463 191213609 -5981823 + L1M4 LINE L1 4641 4777 -1369 3 2043 530 235 0 6 chr1 191213695 191213866 -5981566 + (TG)n Simple_repeat Simple_repeat 2 171 0 3 2043 325 289 40 106 chr1 191213877 191214152 -5981280 + L1M4 LINE L1 4958 5214 -932 3 2043 366 105 0 50 chr1 191214365 191214425 -5981007 + L1Md_F LINE L1 172 228 -6291 3 2043 36960 62 54 9 chr1 191214426 191216975 -5978457 + L1Md_A LINE L1 263 2933 -2950 3 2043 4424 14 12 0 chr1 191216975 191217462 -5977970 + MT2_Mm LTR ERVL 1 493 0 3 2043 36960 31 1 1 chr1 191217462 191220120 -5975312 + L1Md_A LINE L1 2934 5586 -297 3 2043 8693 24 3 0 chr1 191220120 191221113 -5974319 + L1Md_A LINE L1 5587 6582 0 3 2043 317 145 16 0 chr1 191221174 191221236 -5974196 + CT-rich Low_complexity Low_complexity 1 63 0 3 2043 525 16 0 0 chr1 191221250 191221312 -5974120 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 2043 651 241 67 82 chr1 191221340 191221548 -5973884 + B4 SINE B4 88 292 0 3 2043 411 312 21 0 chr1 191221944 191222085 -5973347 - RMER15 LTR ERVL -40 535 392 3 2043 310 366 0 0 chr1 191223262 191223374 -5972058 - PB1D7 SINE Alu -7 113 2 3 2043 182 341 67 72 chr1 191223622 191223802 -5971630 - MIRb SINE MIR -85 183 5 3 2043 206 375 65 37 chr1 191224272 191224380 -5971052 - L4 LINE RTE -905 1124 1014 3 2043 1724 165 165 130 chr1 191228011 191228056 -5967376 - MT2A LTR ERVL 0 533 490 3 2043 366 91 0 0 chr1 191228056 191228111 -5967321 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 3 2043 1724 165 165 130 chr1 191228111 191228580 -5966852 - MT2A LTR ERVL -44 489 1 3 2043 25 0 0 0 chr1 191229835 191229860 -5965572 + AT_rich Low_complexity Low_complexity 1 25 0 3 2043 650 284 43 50 chr1 191229870 191230152 -5965280 + B4A SINE B4 5 284 -8 3 2043 338 192 249 6 chr1 191230312 191230441 -5964991 - B3 SINE B2 -29 166 8 3 2043 749 337 58 30 chr1 191230578 191230710 -5964722 - Lx9 LINE L1 0 7473 7333 3 2043 432 0 0 0 chr1 191230710 191230758 -5964674 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 2043 786 337 58 30 chr1 191230758 191231126 -5964306 - Lx9 LINE L1 -188 7456 6960 3 2043 634 265 54 92 chr1 191231521 191231816 -5963616 + B4A SINE B4 9 292 0 3 2043 640 294 80 69 chr1 191232464 191232753 -5962679 + B4 SINE B4 1 292 0 3 2043 225 0 0 0 chr1 191232783 191232808 -5962624 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 2043 333 0 0 0 chr1 191232808 191232844 -5962588 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 2043 210 143 0 0 chr1 191233370 191233405 -5962027 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 3 2043 294 236 261 9 chr1 191233405 191233516 -5961916 - B1F SINE Alu -10 139 1 3 2043 360 0 0 0 chr1 191233642 191233682 -5961750 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 2044 1646 150 0 34 chr1 191234431 191234700 -5960732 - RLTR14 LTR ERV1 -38 344 85 3 2044 2884 154 87 9 chr1 191235215 191235758 -5959674 + RMER4B LTR ERVK 1 585 0 3 2044 21 36 0 0 chr1 191236124 191236152 -5959280 + AT_rich Low_complexity Low_complexity 1 28 0 3 2044 433 288 25 8 chr1 191236908 191237027 -5958405 + ORR1E LTR MaLR 11 131 -228 3 2044 297 320 116 0 chr1 191237815 191237962 -5957470 - RMER15 LTR ERVL -65 510 347 3 2044 362 291 47 13 chr1 191239193 191239343 -5956089 - MER96B DNA hAT -209 208 54 3 2044 2291 76 3 54 chr1 191239810 191240145 -5955287 + ORR1A2 LTR MaLR 1 318 -9 3 2044 236 320 32 70 chr1 191240504 191240662 -5954770 - L2 LINE L2 -791 2628 2477 3 2044 289 294 104 104 chr1 191240958 191241178 -5954254 - L2 LINE L2 -1407 2012 1793 3 2044 459 125 0 0 chr1 191241255 191241327 -5954105 + (ATGGTG)n Simple_repeat Simple_repeat 3 74 0 3 2044 199 363 22 0 chr1 191241424 191241515 -5953917 - MER5A DNA MER1_type -75 114 22 3 2044 540 287 114 24 chr1 191241790 191241986 -5953446 + B3 SINE B2 11 216 0 3 2044 508 248 72 92 chr1 191242302 191242595 -5952837 - B4A SINE B4 -4 288 2 3 2044 235 349 139 27 chr1 191242597 191242856 -5952576 - L2a LINE L2 0 3426 3139 3 2044 240 324 127 50 chr1 191242977 191243237 -5952195 - L2a LINE L2 -448 2971 2692 3 2044 334 292 44 75 chr1 191243569 191243728 -5951704 + B4A SINE B4 2 155 -137 3 2044 872 243 11 5 chr1 191244039 191244229 -5951203 + ID_B1 SINE B4 4 194 -30 3 2044 246 355 8 16 chr1 191244124 191244247 -5951185 - YREP_Mm Unknown Unknown -1504 308 187 3 2044 684 61 0 0 chr1 191244247 191244345 -5951087 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 2044 351 0 0 0 chr1 191244345 191244384 -5951048 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 2044 339 44 0 0 chr1 191244407 191244452 -5950980 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 2044 459 0 0 0 chr1 191244452 191244503 -5950929 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 2044 198 0 0 0 chr1 191244528 191244550 -5950882 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 2044 243 0 0 0 chr1 191244550 191244576 -5950856 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 2044 459 0 0 0 chr1 191246207 191246258 -5949174 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 2044 506 326 53 29 chr1 191246286 191246532 -5948900 - B4A SINE B4 -39 253 2 3 2044 646 269 112 96 chr1 191247471 191247794 -5947638 + Lx7 LINE L1 6975 7332 -364 3 2044 216 0 0 0 chr1 191247794 191247818 -5947614 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 2044 567 263 110 110 chr1 191247818 191247958 -5947474 + Lx7 LINE L1 7329 7468 -5 3 2044 26 0 0 0 chr1 191247958 191247984 -5947448 + AT_rich Low_complexity Low_complexity 1 26 0 3 2044 214 283 57 41 chr1 191248249 191248359 -5947073 + MIRb SINE MIR 28 146 -122 3 2044 750 268 60 22 chr1 191249695 191249962 -5945470 + B4A SINE B4 3 279 -13 3 2044 364 275 186 6 chr1 191250658 191250763 -5944669 + MER20 DNA MER1_type 30 160 -59 3 2044 1165 251 106 3 chr1 191250763 191251103 -5944329 + MTE2b LTR MaLR 1 375 -4 3 2044 364 275 186 6 chr1 191251103 191251158 -5944274 + MER20 DNA MER1_type 161 219 0 3 2044 1162 220 243 0 chr1 191251662 191251999 -5943433 + MTD LTR MaLR 1 419 0 3 2044 496 120 27 0 chr1 191251999 191252074 -5943358 - PB1D10 SINE Alu -34 83 7 3 2044 557 325 73 0 chr1 191252084 191252275 -5943157 + MLT1B LTR MaLR 83 287 -103 3 2044 282 228 152 0 chr1 191252586 191252665 -5942767 + MER5A DNA MER1_type 22 112 -77 3 2044 603 137 143 16 chr1 191252722 191252848 -5942584 - B1_Mur2 SINE Alu -1 148 7 3 2044 213 344 10 50 chr1 191253026 191253127 -5942305 + L2c LINE L2 3291 3387 0 3 2044 662 284 56 9 chr1 191253197 191253410 -5942022 + ID_B1 SINE B4 2 224 0 3 2044 467 299 24 88 chr1 191254886 191255180 -5940252 + L1M2 LINE L1 5502 5776 -515 3 2044 686 276 48 25 chr1 191255187 191255387 -5940045 - MTE2b LTR MaLR -2 377 158 3 2044 236 185 19 0 chr1 191255387 191255441 -5939991 + CT-rich Low_complexity Low_complexity 3 57 0 3 2044 659 270 33 33 chr1 191255446 191255626 -5939806 - MTE2b LTR MaLR -197 182 3 3 2044 1537 247 143 19 chr1 191255628 191256111 -5939321 - MTE2b-int LTR MaLR 0 1580 1038 3 2044 1562 304 10 35 chr1 191256108 191256598 -5938834 - MTE2b-int LTR MaLR -1049 531 54 3 2044 367 274 105 40 chr1 191256617 191256706 -5938726 - MTEa LTR MaLR 0 379 281 3 2044 1203 278 49 41 chr1 191256706 191256788 -5938644 + ORR1D2 LTR MaLR 1 83 -287 3 2044 2328 93 12 0 chr1 191256788 191257111 -5938321 + ORR1A2 LTR MaLR 1 327 0 3 2044 1203 278 49 41 chr1 191257111 191257395 -5938037 + ORR1D2 LTR MaLR 84 370 0 3 2044 1007 320 25 3 chr1 191257395 191257677 -5937755 - MTE2b LTR MaLR -87 292 5 3 2044 425 271 137 89 chr1 191258846 191259117 -5936315 + Lx8 LINE L1 7152 7435 -38 3 2044 465 257 8 34 chr1 191259123 191259240 -5936192 - PB1D10 SINE Alu -3 114 1 4 2044 30 0 0 0 chr1 191260814 191260844 -5934588 + AT_rich Low_complexity Low_complexity 1 30 0 4 2044 287 227 0 49 chr1 191262220 191262322 -5933110 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 2044 338 220 24 35 chr1 191262921 191263006 -5932426 - HAL1-3A_ME LINE L1 -800 2058 1975 4 2044 344 240 0 19 chr1 191263059 191263165 -5932267 + (TATATG)n Simple_repeat Simple_repeat 6 109 0 4 2044 696 200 0 0 chr1 191263150 191263330 -5932102 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 2044 582 236 8 8 chr1 191263809 191263937 -5931495 + ID_B1 SINE B4 89 216 -8 4 2044 989 245 60 4 chr1 191264698 191264964 -5930468 + B4A SINE B4 2 282 -10 4 2044 662 179 0 7 chr1 191265152 191265287 -5930145 + CT-rich Low_complexity Low_complexity 1 134 0 4 2044 239 299 15 0 chr1 191266391 191266458 -5928974 - MIRb SINE MIR -168 100 33 4 2044 698 269 104 76 chr1 191266479 191266795 -5928637 + ORR1E LTR MaLR 24 374 -5 4 2044 21 0 0 0 chr1 191268313 191268334 -5927098 + AT_rich Low_complexity Low_complexity 1 21 0 4 2044 227 265 37 93 chr1 191268580 191268688 -5926744 - MTEb LTR MaLR -149 230 129 4 2044 1106 266 110 40 chr1 191268839 191269618 -5925814 + L1MC3 LINE L1 5447 6328 -5 4 2044 189 0 0 0 chr1 191269619 191269640 -5925792 + (T)n Simple_repeat Simple_repeat 1 21 0 4 2044 40849 18 0 6 chr1 191269662 191275668 -5919764 - L1Md_A LINE L1 0 6582 618 4 2044 2832 18 2 213 chr1 191275670 191276162 -5919270 - RLTR10 LTR ERVK -2 388 1 4 2044 13473 27 2 51 chr1 191276164 191278285 -5917147 - RLTR10-int LTR ERVK -3 1984 41 4 2044 2812 18 2 213 chr1 191278297 191278789 -5916643 - RLTR10 LTR ERVK -2 388 1 4 2044 1525 47 0 0 chr1 191278789 191278979 -5916453 - L1Md_A LINE L1 -6310 414 225 4 2044 199 106 106 0 chr1 191279966 191280288 -5915144 + (CTATT)n Simple_repeat Simple_repeat 1 356 0 4 2044 237 200 28 28 chr1 191280693 191280765 -5914667 - RMER19B LTR ERVK 0 902 831 4 2044 889 208 74 0 chr1 191280765 191280967 -5914465 + MTEb LTR MaLR 125 341 -38 4 2044 3062 35 2 15 chr1 191281044 191281451 -5913981 - MTB_Mm LTR MaLR -5 402 1 4 2044 22 0 0 0 chr1 191281676 191281698 -5913734 + AT_rich Low_complexity Low_complexity 1 22 0 4 2044 443 310 36 56 chr1 191281870 191282062 -5913370 + LTR40a LTR ERVL 65 252 -267 4 2044 645 290 80 38 chr1 191282062 191282346 -5913086 + B4 SINE B4 2 292 0 4 2044 259 328 31 15 chr1 191282494 191282624 -5912808 + LTR40a LTR ERVL 313 444 -18 4 2044 217 250 18 0 chr1 191282643 191282699 -5912733 - B4 SINE B4 -219 73 17 4 2044 195 42 0 0 chr1 191282699 191282723 -5912709 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 2044 289 215 46 0 chr1 191283593 191283658 -5911774 + ID4_ SINE ID 16 83 0 4 2044 204 122 0 0 chr1 191284080 191284121 -5911311 + (CGGGGG)n Simple_repeat Simple_repeat 2 42 0 4 2044 332 323 8 24 chr1 191284480 191284607 -5910825 + MLT1A0 LTR MaLR 7 131 -234 4 2044 985 188 88 35 chr1 191284618 191284844 -5910588 - MTD LTR MaLR -7 412 175 4 2044 460 328 39 11 chr1 191284858 191285037 -5910395 + MLT1A0 LTR MaLR 179 362 -3 4 2044 491 229 32 24 chr1 191285092 191285217 -5910215 + B1F1 SINE Alu 14 139 -10 4 2044 461 181 0 0 chr1 191286014 191286097 -5909335 - MTE2b LTR MaLR -239 140 58 4 2044 32301 91 27 6 chr1 191286988 191293041 -5902391 + L1_Mus1 LINE L1 380 6653 -1 4 2044 279 274 27 0 chr1 191293748 191293821 -5901611 - ID4_ SINE ID -2 81 7 4 2044 2942 235 79 1 chr1 191293833 191294578 -5900854 + L1_Mur3 LINE L1 4108 4910 -970 4 2044 315 140 0 0 chr1 191294639 191294696 -5900736 - URR1B DNA MER1_type -59 166 110 4 2044 925 273 64 4 chr1 191294765 191295030 -5900402 + L1_Mur3 LINE L1 4905 5185 -695 4 2044 3893 109 99 2 chr1 191295172 191295816 -5899616 - RMER19A LTR ERVK -30 707 1 4 2044 1091 251 48 13 chr1 191295816 191296127 -5899305 + ORR1D1 LTR MaLR 53 374 0 4 2044 343 183 14 0 chr1 191296127 191296198 -5899234 + L1_Rod LINE L1 5164 5235 -612 4 2044 295 342 65 19 chr1 191296428 191296583 -5898849 + MLT1A LTR MaLR 1 162 -212 4 2044 244 383 33 8 chr1 191298506 191298627 -5896805 + ORR1E LTR MaLR 26 149 -210 4 2044 2369 139 78 20 chr1 191298796 191299192 -5896240 - MTC LTR MaLR 0 421 3 4 2044 1693 156 11 61 chr1 191299221 191299583 -5895849 + RLTR31A_Mm LTR ERVK 1 344 -240 4 2044 270 271 109 58 chr1 191300848 191300985 -5894447 - RSINE1 SINE B4 -19 146 3 4 2044 30 0 0 0 chr1 191302662 191302692 -5892740 + AT_rich Low_complexity Low_complexity 1 30 0 4 2044 348 244 33 42 chr1 191303143 191303263 -5892169 + Lx8 LINE L1 7353 7471 -2 4 2044 444 207 0 0 chr1 191303336 191303423 -5892009 + ID_B1 SINE B4 130 216 -8 4 2044 252 86 0 0 chr1 191303423 191303458 -5891974 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 2044 587 201 0 7 chr1 191303459 191303599 -5891833 + GA-rich Low_complexity Low_complexity 3 141 0 4 2044 4186 170 55 62 chr1 191303978 191304893 -5890539 + RMER13B LTR ERVK 1 908 0 4 2044 21 0 0 0 chr1 191305088 191305109 -5890323 + AT_rich Low_complexity Low_complexity 1 21 0 4 2044 567 263 84 25 chr1 191305173 191305376 -5890056 - B4A SINE B4 -67 225 11 4 2044 1067 94 12 32 chr1 191306212 191306714 -5888718 + (TAGA)n Simple_repeat Simple_repeat 1 492 0 4 2044 225 0 0 0 chr1 191307271 191307296 -5888136 + (T)n Simple_repeat Simple_repeat 1 25 0 4 2044 756 278 155 22 chr1 191307303 191307635 -5887797 - MTE2b LTR MaLR -3 376 7 4 2044 912 222 26 0 chr1 191307645 191307839 -5887593 + B3 SINE B2 8 206 -10 4 2044 2273 110 3 58 chr1 191308547 191308893 -5886539 - ORR1A2 LTR MaLR 0 327 1 4 2044 21 0 0 0 chr1 191309257 191309278 -5886154 + AT_rich Low_complexity Low_complexity 1 21 0 4 2044 3853 148 91 24 chr1 191309949 191310782 -5884650 - RMER17D LTR ERVK 0 889 1 4 2044 291 301 0 14 chr1 191311602 191311676 -5883756 + PB1D10 SINE Alu 30 102 -15 4 2044 811 261 33 146 chr1 191312367 191312793 -5882639 - MTE2b LTR MaLR -1 378 1 4 2044 219 69 0 0 chr1 191313111 191313140 -5882292 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4 2044 208 176 20 0 chr1 191313631 191313682 -5881750 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 4 2044 256 60 0 57 chr1 191313690 191313743 -5881689 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 4 2044 4661 154 39 38 chr1 191313773 191314722 -5880710 + RMER17B LTR ERVK 5 954 -4 4 2044 2282 104 3 12 chr1 191315179 191315509 -5879923 + ORR1A2 LTR MaLR 1 327 0 4 2044 909 242 23 19 chr1 191315975 191316190 -5879242 - B3 SINE B2 0 216 1 4 2044 327 296 75 113 chr1 191316603 191316938 -5878494 + ORR1E LTR MaLR 36 357 -2 4 2044 242 235 37 64 chr1 191316999 191317108 -5878324 - LTR48 LTR ERV1 -5 782 677 4 2044 535 285 165 23 chr1 191320430 191320696 -5874736 - MLT1K LTR MaLR -186 409 106 4 2044 754 194 39 6 chr1 191320755 191320911 -5874521 + B3A SINE B2 1 161 -37 4 2044 589 251 168 35 chr1 191321665 191321921 -5873511 - B4A SINE B4 -2 290 1 4 2044 768 22 0 0 chr1 191322595 191322685 -5872747 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 4 2044 585 0 0 0 chr1 191322686 191322751 -5872681 + (GGGA)n Simple_repeat Simple_repeat 3 67 0 4 2044 3447 137 40 54 chr1 191322788 191323438 -5871994 + RLTR26 LTR ERVK 2 642 0 4 2044 876 179 42 10 chr1 191323664 191323856 -5871576 - RMER15 LTR ERVL 0 575 378 4 2044 235 93 93 0 chr1 191323856 191323899 -5871533 - RLTR15 LTR ERVK 0 359 313 4 2044 764 124 0 0 chr1 191323891 191324012 -5871420 - RLTR15 LTR ERVK -238 121 1 4 2044 1530 177 112 3 chr1 191324022 191324362 -5871070 - RMER15 LTR ERVL -197 378 2 4 2044 401 198 0 10 chr1 191324513 191324610 -5870822 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 2044 288 244 13 21 chr1 191324644 191324725 -5870707 - B3A SINE B2 -36 180 102 4 2044 1384 39 6 6 chr1 191324789 191324969 -5870463 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 2044 918 150 0 22 chr1 191324969 191325153 -5870279 + GA-rich Low_complexity Low_complexity 1 180 0 4 2044 1239 54 0 0 chr1 191325443 191325591 -5869841 + B1_Mus1 SINE Alu 1 148 0 4 2044 1266 90 0 0 chr1 191325610 191325788 -5869644 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 4 2044 974 159 175 0 chr1 191326072 191326261 -5869171 + URR1B DNA MER1_type 1 222 -3 4 2044 587 279 18 12 chr1 191326279 191326442 -5868990 + RSINE1 SINE B4 2 165 0 4 2044 790 45 9 18 chr1 191326481 191326593 -5868839 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 4 2044 494 272 59 11 chr1 191326631 191326817 -5868615 - L1M2 LINE L1 -1392 4751 4557 4 2044 1019 148 84 0 chr1 191327065 191327267 -5868165 - URR1B DNA MER1_type 0 225 7 4 2044 1052 303 126 14 chr1 191327329 191327885 -5867547 + L1MA7 LINE L1 5674 6291 0 4 2044 1503 69 0 5 chr1 191327891 191328081 -5867351 + B2_Mm2 SINE B2 2 190 -5 4 2044 247 287 109 39 chr1 191328178 191328334 -5867098 - MIRb SINE MIR -67 201 35 4 2044 943 88 20 0 chr1 191328875 191329022 -5866410 + (GGAA)n Simple_repeat Simple_repeat 2 151 0 4 2044 444 163 0 0 chr1 191329275 191329361 -5866071 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 2044 225 267 64 39 chr1 191329611 191329689 -5865743 - ORR1E LTR MaLR 0 379 300 4 2044 282 266 28 130 chr1 191330071 191330179 -5865253 - MTEa LTR MaLR -282 97 1 4 2044 270 326 60 8 chr1 191330342 191330475 -5864957 - MIR SINE MIR -104 158 19 4 2044 283 279 62 28 chr1 191331471 191331615 -5863817 - ORR1E LTR MaLR -210 149 1 4 2044 272 137 20 0 chr1 191331965 191332016 -5863416 + GA-rich Low_complexity Low_complexity 2 53 0 4 2044 957 129 12 6 chr1 191332028 191332200 -5863232 + (GAA)n Simple_repeat Simple_repeat 2 174 0 4 2044 711 0 0 0 chr1 191332201 191332280 -5863152 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 4 2044 363 224 35 82 chr1 191332605 191332775 -5862657 + RNLTR23 LTR ERVK 481 642 0 4 2044 397 285 113 149 chr1 191332865 191333166 -5862266 + B4 SINE B4 3 292 0 5 2044 228 143 0 0 chr1 191333928 191333970 -5861462 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 2044 720 284 142 4 chr1 191334003 191334243 -5861189 - B4 SINE B4 -14 278 6 5 2044 564 272 91 30 chr1 191334815 191335111 -5860321 - Charlie19a DNA Charlie -15 371 58 5 2044 800 176 6 0 chr1 191335734 191335899 -5859533 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 2044 507 151 0 0 chr1 191336304 191336430 -5859002 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 5 2044 313 298 112 8 chr1 191336519 191336644 -5858788 + MER34A1 LTR ERV1 223 360 -227 5 2044 418 279 202 0 chr1 191337883 191338012 -5857420 + B3 SINE B2 1 155 -61 5 2044 691 11 23 0 chr1 191338039 191338127 -5857305 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 5 2044 180 217 0 0 chr1 191339268 191339314 -5856118 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 5 2044 245 330 108 64 chr1 191340047 191340251 -5855181 - MamRep38 DNA hAT -76 219 7 5 2044 373 211 26 13 chr1 191340674 191340751 -5854681 - MTE2a LTR MaLR -235 144 67 5 2044 522 0 0 0 chr1 191341023 191341081 -5854351 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 2044 1022 240 16 8 chr1 191341144 191341388 -5854044 - B4 SINE B4 -23 269 24 5 2044 196 351 56 67 chr1 191341614 191341794 -5853638 - L2a LINE L2 0 3426 3249 5 2044 510 197 8 8 chr1 191341804 191341922 -5853510 + Lx7 LINE L1 7579 7696 0 5 2044 232 343 57 0 chr1 191342079 191342159 -5853273 - RMER12 LTR ERVK -471 851 770 5 2044 513 0 0 0 chr1 191342159 191342216 -5853216 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 2044 232 343 57 0 chr1 191342216 191342240 -5853192 - RMER12 LTR ERVK -553 769 742 5 2044 830 330 6 11 chr1 191342301 191342665 -5852767 + L1M2 LINE L1 4486 4847 -1296 5 2044 1731 101 65 4 chr1 191343096 191343374 -5852058 - RMER19B LTR ERVK 0 902 608 5 2044 2261 141 66 10 chr1 191343387 191343781 -5851651 - RMER19B LTR ERVK -484 418 3 5 2044 300 53 0 0 chr1 191344076 191344114 -5851318 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 2044 1439 73 16 5 chr1 191344201 191344393 -5851039 + B2_Mm2 SINE B2 1 194 -1 5 2044 3424 132 24 15 chr1 191345100 191345633 -5849799 + Lx4A LINE L1 6518 7055 -3 5 2044 210 150 0 0 chr1 191345636 191345676 -5849756 + (CAGAGA)n Simple_repeat Simple_repeat 4 43 0 5 2044 437 258 172 18 chr1 191346500 191346721 -5848711 + Lx6 LINE L1 5642 5896 -1564 5 2044 201 235 11 23 chr1 191346811 191346898 -5848534 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 5 2044 371 125 0 14 chr1 191346940 191347013 -5848419 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 2044 585 0 0 0 chr1 191347407 191347472 -5847960 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 2044 210 174 0 0 chr1 191347849 191347895 -5847537 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 5 2044 548 73 12 0 chr1 191347977 191348059 -5847373 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 2044 829 247 115 104 chr1 191349583 191349958 -5845474 + MTEa LTR MaLR 1 379 0 5 2044 1197 281 50 11 chr1 191350015 191350379 -5845053 - Lx6 LINE L1 -2 7458 7081 5 2044 229 304 0 0 chr1 191351077 191351146 -5844286 - MTEb LTR MaLR -287 92 24 5 2044 5158 86 7 1 chr1 191351647 191352356 -5843076 + L1_Mm LINE L1 3965 4677 -1206 5 2044 448 282 65 28 chr1 191352969 191353312 -5842120 - MLT1A1 LTR MaLR 0 408 5 5 2044 3048 37 52 13 chr1 191354980 191355364 -5840068 + MTB LTR MaLR 2 400 0 5 2044 587 308 188 11 chr1 191355611 191355833 -5839599 + ORR1E LTR MaLR 26 276 -83 5 2044 394 303 0 16 chr1 191355989 191356113 -5839319 + RMER15 LTR ERVL 300 421 -154 5 2044 254 29 29 0 chr1 191356195 191356230 -5839202 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 5 2044 314 252 22 17 chr1 191356273 191356372 -5839060 + ORR1E LTR MaLR 262 376 -3 5 2044 1524 18 0 0 chr1 191357683 191357852 -5837580 + L1Md_T LINE L1 5418 5586 -297 5 2044 8523 30 4 0 chr1 191357852 191358844 -5836588 + L1Md_T LINE L1 5587 6582 0 5 2044 4959 53 5 3 chr1 191358840 191359459 -5835973 + L1Md_F2 LINE L1 5963 6582 0 5 2044 5147 42 3 3 chr1 191359454 191360072 -5835360 + L1Md_F2 LINE L1 5963 6580 -2 5 2044 950 63 0 0 chr1 191361384 191361511 -5833921 + B1_Mus1 SINE Alu 1 127 -21 5 2044 1183 85 0 14 chr1 191361511 191361754 -5833678 + (GAA)n Simple_repeat Simple_repeat 1 239 0 5 2044 1189 85 0 11 chr1 191361754 191361932 -5833500 + (GGA)n Simple_repeat Simple_repeat 3 178 0 5 2044 596 58 0 23 chr1 191361932 191361957 -5833475 + (GAA)n Simple_repeat Simple_repeat 1 25 0 5 2044 208 188 0 59 chr1 191362133 191362201 -5833231 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 2044 1084 208 14 14 chr1 191362252 191362467 -5832965 + B3 SINE B2 2 216 0 5 2044 23 54 0 0 chr1 191362468 191362505 -5832927 + AT_rich Low_complexity Low_complexity 1 37 0 5 2044 186 143 0 0 chr1 191363269 191363300 -5832132 + (A)n Simple_repeat Simple_repeat 1 31 0 5 2044 1157 75 0 7 chr1 191363300 191363448 -5831984 + B1_Mm SINE Alu 1 147 0 5 2044 186 143 0 0 chr1 191363448 191363458 -5831974 + (A)n Simple_repeat Simple_repeat 1 10 0 5 2044 299 278 87 20 chr1 191364223 191364253 -5831179 + Arthur1 DNA Tip100 3668 3699 -248 5 2044 1002 103 20 7 chr1 191364253 191364399 -5831033 + B1_Mus1 SINE Alu 1 148 0 5 2044 299 278 87 20 chr1 191364399 191364563 -5830869 + Arthur1 DNA Tip100 3700 3875 -72 5 2045 511 187 56 0 chr1 191365192 191365299 -5830133 + B3 SINE B2 104 216 0 5 2045 3971 153 18 8 chr1 191366848 191367182 -5828250 + RMER6D LTR ERVK 1 340 -380 5 2045 465 19 0 0 chr1 191367182 191367236 -5828196 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 2045 3971 153 18 8 chr1 191367236 191367606 -5827826 + RMER6D LTR ERVK 341 711 -9 5 2045 269 310 80 72 chr1 191367647 191367911 -5827521 + ORR1E LTR MaLR 94 359 0 5 2045 736 257 29 10 chr1 191368270 191368478 -5826954 - B3 SINE B2 0 216 5 5 2045 1880 194 47 0 chr1 191368507 191368872 -5826560 + ORR1C2 LTR MaLR 1 382 -2 5 2045 360 0 0 0 chr1 191370136 191370176 -5825256 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 5 2045 3040 144 84 9 chr1 191370176 191370749 -5824683 + ORR1C2-int LTR MaLR 894 1509 0 5 2045 611 143 58 29 chr1 191370749 191370873 -5824559 + ORR1C2 LTR MaLR 1 130 -264 5 2045 243 0 0 0 chr1 191370873 191370900 -5824532 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 2045 611 143 58 29 chr1 191370900 191370912 -5824520 + ORR1C2 LTR MaLR 131 141 -253 5 2045 378 0 0 0 chr1 191370914 191370956 -5824476 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 2045 309 199 55 68 chr1 191370956 191371102 -5824330 - HAL1-2a_MD LINE L1 -498 2526 2383 5 2045 1137 140 43 5 chr1 191371106 191371293 -5824139 + ORR1C2 LTR MaLR 166 359 -8 5 2045 537 259 73 12 chr1 191371999 191372163 -5823269 + B4 SINE B4 1 174 -118 5 2045 271 279 8 119 chr1 191372586 191372712 -5822720 + B4 SINE B4 181 292 0 5 2045 464 283 48 79 chr1 191372755 191372920 -5822512 + RSINE1 SINE B4 2 161 -4 5 2045 1762 123 177 0 chr1 191372945 191373222 -5822210 - ORR1A3 LTR MaLR 0 326 1 5 2045 1213 129 0 6 chr1 191373234 191373249 -5822183 - B2_Mm2 SINE B2 -17 178 164 5 2045 288 0 0 0 chr1 191373249 191373281 -5822151 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 5 2045 1213 129 0 6 chr1 191373281 191373444 -5821988 - B2_Mm2 SINE B2 -32 163 1 5 2045 243 0 0 0 chr1 191374083 191374110 -5821322 + (A)n Simple_repeat Simple_repeat 1 27 0 5 2045 213 159 0 0 chr1 191374400 191374444 -5820988 + CT-rich Low_complexity Low_complexity 2 45 0 5 2045 244 337 69 10 chr1 191374568 191374670 -5820762 + PB1D10 SINE Alu 2 109 -8 5 2045 817 198 12 12 chr1 191374777 191374941 -5820491 + B3 SINE B2 4 167 -49 5 2045 312 164 152 9 chr1 191375900 191376005 -5819427 + PB1D7 SINE Alu 1 120 0 5 2045 817 266 30 47 chr1 191376028 191376324 -5819108 + B4A SINE B4 2 292 0 5 2045 674 175 55 14 chr1 191379335 191379480 -5815952 - ORR1C2 LTR MaLR 0 379 229 5 2045 986 120 79 11 chr1 191379481 191379658 -5815774 + RMER6B LTR ERVK 2 190 -271 5 2045 1083 120 0 37 chr1 191379647 191379838 -5815594 - ORR1C2 LTR MaLR -200 184 1 5 2045 676 291 24 12 chr1 191379937 191380183 -5815249 + B4 SINE B4 3 262 -30 5 2045 290 366 0 0 chr1 191380250 191380373 -5815059 + (CA)n Simple_repeat Simple_repeat 2 124 0 5 2045 222 156 0 0 chr1 191380390 191380435 -5814997 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 2045 411 322 62 49 chr1 191380584 191380809 -5814623 - MLT1D LTR MaLR -256 249 22 5 2045 348 161 0 0 chr1 191381529 191381591 -5813841 + (CTG)n Simple_repeat Simple_repeat 1 62 0 5 2045 499 267 42 51 chr1 191381591 191381808 -5813624 - ID_B1 SINE B4 -9 215 1 5 2045 22 35 0 0 chr1 191381883 191381912 -5813520 + AT_rich Low_complexity Low_complexity 1 29 0 5 2045 300 218 58 0 chr1 191382222 191382309 -5813123 + Lx9 LINE L1 7553 7644 0 5 2045 1300 81 17 0 chr1 191382752 191382926 -5812506 - L1Md_F2 LINE L1 -584 5998 5822 5 2045 4346 68 2 7 chr1 191382926 191383485 -5811947 + L1Md_F2 LINE L1 6015 6570 -12 5 2045 434 280 183 57 chr1 191383504 191383750 -5811682 + B4A SINE B4 1 277 -15 5 2045 1005 137 0 0 chr1 191383780 191384010 -5811422 + (CA)n Simple_repeat Simple_repeat 1 230 0 5 2045 343 224 15 0 chr1 191384257 191384324 -5811108 + ID4 SINE ID 14 81 -2 5 2045 888 225 77 89 chr1 191384334 191384661 -5810771 - ORR1D2 LTR MaLR 0 370 48 5 2045 201 39 0 0 chr1 191384941 191384967 -5810465 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 5 2045 3203 159 9 40 chr1 191386502 191387149 -5808283 - RMER20B LTR ERVK 0 627 1 5 2045 937 262 78 32 chr1 191387621 191387905 -5807527 - MTEa LTR MaLR 0 379 83 5 2045 276 77 0 0 chr1 191387905 191387944 -5807488 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 5 2045 378 0 0 0 chr1 191387944 191387986 -5807446 + (GGGGA)n Simple_repeat Simple_repeat 5 46 0 5 2045 441 0 0 0 chr1 191388651 191388700 -5806732 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 2045 339 295 51 6 chr1 191389172 191389329 -5806103 - L1M3 LINE L1 -449 5740 5577 5 2045 384 213 0 0 chr1 191389436 191389511 -5805921 + B3A SINE B2 1 75 -123 5 2045 2733 78 76 0 chr1 191389529 191389911 -5805521 + RLTR10A LTR ERVK 1 411 0 5 2045 317 250 8 104 chr1 191389938 191390063 -5805369 + B3 SINE B2 84 214 -2 5 2045 291 246 20 118 chr1 191390111 191390263 -5805169 + L1MA9 LINE L1 6170 6306 -6 5 2045 204 303 150 10 chr1 191390589 191390689 -5804743 - L2b LINE L2 -72 3303 3190 5 2045 455 164 6 65 chr1 191390694 191390864 -5804568 + GA-rich Low_complexity Low_complexity 1 160 0 5 2045 363 265 114 39 chr1 191390866 191391108 -5804324 + HAL1-3A_ME LINE L1 2284 2439 -419 6 2045 296 303 11 11 chr1 191391115 191391205 -5804227 + G-rich Low_complexity Low_complexity 2 91 0 6 2045 216 0 0 0 chr1 191391729 191391753 -5803679 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 2045 287 304 164 50 chr1 191392603 191392804 -5802628 + B4 SINE B4 69 292 0 6 2045 339 294 92 86 chr1 191392980 191393222 -5802210 - L1ME1 LINE L1 -65 6114 5859 6 2045 1359 74 0 6 chr1 191393222 191393398 -5802034 + B2_Mm2 SINE B2 2 176 -19 6 2045 339 294 92 86 chr1 191393398 191393482 -5801950 - L1ME1 LINE L1 -321 5858 5786 6 2045 321 276 392 25 chr1 191393576 191393734 -5801698 - ID_B1 SINE B4 -4 220 5 6 2045 306 312 71 19 chr1 191393751 191393963 -5801469 - L1ME1 LINE L1 -495 5684 5462 6 2045 926 130 6 0 chr1 191394405 191394582 -5800850 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 2045 222 91 0 0 chr1 191394582 191394615 -5800817 + (TATG)n Simple_repeat Simple_repeat 3 35 0 6 2045 996 128 0 0 chr1 191394615 191394794 -5800638 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 2045 261 0 0 0 chr1 191395216 191395245 -5800187 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 2045 216 0 0 0 chr1 191395248 191395272 -5800160 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 6 2045 562 321 30 0 chr1 191395273 191395438 -5799994 - B3A SINE B2 -25 173 4 6 2045 378 0 0 0 chr1 191395540 191395582 -5799850 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 2045 204 67 0 0 chr1 191395692 191395722 -5799710 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 2045 203 253 40 0 chr1 191395912 191395987 -5799445 + (TATAA)n Simple_repeat Simple_repeat 5 82 0 6 2045 674 250 23 65 chr1 191396128 191396316 -5799116 - B3A SINE B2 -5 211 38 6 2045 814 338 50 37 chr1 191396509 191396890 -5798542 + MLT1C LTR MaLR 78 463 -4 6 2045 419 311 40 59 chr1 191397020 191397302 -5798130 + B4A SINE B4 3 281 -11 6 2045 646 364 94 31 chr1 191397366 191397944 -5797488 - L2a LINE L2 -305 3121 2504 6 2045 1024 314 25 19 chr1 191397980 191398304 -5797128 + MTEb LTR MaLR 1 326 -53 6 2045 581 146 15 30 chr1 191398304 191398438 -5796994 + CT-rich Low_complexity Low_complexity 4 135 0 6 2045 245 175 61 45 chr1 191398438 191398504 -5796928 + MTEb LTR MaLR 313 379 0 6 2045 914 94 286 0 chr1 191398880 191399051 -5796381 - Lx LINE L1 -8 6646 6427 6 2045 242 278 88 66 chr1 191399172 191399353 -5796079 - B2_Mm1a SINE B2 -7 186 2 6 2045 578 289 33 0 chr1 191399203 191399355 -5796077 - RSINE1 SINE B4 -8 157 1 6 2045 457 318 78 53 chr1 191400010 191400292 -5795140 - RMER15 LTR ERVL -8 567 279 6 2045 938 302 144 42 chr1 191400746 191400867 -5794565 + MLT1E2 LTR MaLR 26 171 -456 6 2045 828 224 25 20 chr1 191400867 191401063 -5794369 + B3A SINE B2 2 198 0 6 2045 938 302 144 42 chr1 191401063 191401483 -5793949 + MLT1E2 LTR MaLR 172 622 -5 6 2045 872 208 51 0 chr1 191402600 191402778 -5792654 + B3 SINE B2 15 201 -15 6 2045 25 31 0 0 chr1 191402818 191402850 -5792582 + AT_rich Low_complexity Low_complexity 1 32 0 6 2045 1054 210 214 10 chr1 191404946 191405249 -5790183 + MTD LTR MaLR 18 382 -37 6 2045 2371 223 30 89 chr1 191405261 191406073 -5789359 + RMER17B LTR ERVK 37 772 -186 6 2045 341 249 225 40 chr1 191406044 191406320 -5789112 + RMER13B LTR ERVK 582 908 0 6 2045 370 250 59 17 chr1 191406706 191406824 -5788608 - MLT1B LTR MaLR -12 455 333 6 2045 421 326 138 0 chr1 191406918 191407114 -5788318 - MLT1B LTR MaLR -167 223 1 6 2045 270 0 0 0 chr1 191407200 191407230 -5788202 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 2045 184 190 34 17 chr1 191407288 191407347 -5788085 + GA-rich Low_complexity Low_complexity 2 61 0 6 2045 914 170 0 21 chr1 191407401 191407545 -5787887 + B1_Mm SINE Alu 1 141 -6 6 2045 306 184 0 0 chr1 191407904 191407953 -5787479 - ID_B1 SINE B4 -2 222 174 6 2045 301 186 96 41 chr1 191407953 191407972 -5787460 - PB1D10 SINE Alu 0 112 41 6 2045 193 176 53 13 chr1 191408449 191408524 -5786908 + GA-rich Low_complexity Low_complexity 2 79 0 6 2045 261 286 140 20 chr1 191408674 191408774 -5786658 + PB1D7 SINE Alu 7 118 -2 6 2045 387 228 267 6 chr1 191408822 191408994 -5786438 + ID_B1 SINE B4 8 224 0 6 2045 225 0 0 0 chr1 191409412 191409437 -5785995 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 2045 1056 108 0 0 chr1 191409501 191409658 -5785774 + (GAAA)n Simple_repeat Simple_repeat 3 159 0 6 2045 252 342 26 13 chr1 191409721 191409875 -5785557 + ERVL-E-int LTR ERVL 1032 1187 -4480 6 2045 678 323 46 43 chr1 191410102 191410448 -5784984 - MT2A LTR ERVL -183 350 4 6 2045 648 250 78 29 chr1 191410448 191410608 -5784824 + B3 SINE B2 1 163 -53 6 2045 324 64 0 0 chr1 191410608 191410655 -5784777 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 2045 648 250 78 29 chr1 191410655 191410700 -5784732 + B3 SINE B2 164 216 0 6 2045 240 273 78 2 chr1 191412714 191412814 -5782618 + B1F SINE Alu 1 109 -8 6 2045 462 220 22 0 chr1 191412824 191412915 -5782517 + B3A SINE B2 1 93 -105 6 2045 324 218 63 84 chr1 191412932 191412998 -5782434 + Lx8 LINE L1 7200 7270 -203 6 2045 4240 159 9 29 chr1 191412998 191413769 -5781663 + RMER6A LTR ERVK 1 756 0 6 2045 324 218 63 84 chr1 191413769 191413797 -5781635 + Lx8 LINE L1 7271 7292 -181 6 2045 448 315 113 62 chr1 191415601 191415776 -5779656 + Lx8 LINE L1 7160 7358 -115 6 2045 4518 51 2 0 chr1 191415776 191416321 -5779111 + L1_Mus2 LINE L1 6021 6566 0 6 2045 448 315 113 62 chr1 191416321 191416436 -5778996 + Lx8 LINE L1 7359 7465 -8 6 2045 396 0 0 0 chr1 191416662 191416706 -5778726 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 6 2045 1367 100 0 6 chr1 191416854 191417035 -5778397 + B2_Mm2 SINE B2 2 181 -14 6 2045 692 258 10 112 chr1 191418385 191418424 -5777008 - B3A SINE B2 -14 184 156 6 2045 387 0 0 0 chr1 191418424 191418467 -5776965 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 2045 692 258 10 112 chr1 191418467 191418632 -5776800 - B3A SINE B2 -43 155 1 6 2045 230 290 76 48 chr1 191418854 191418959 -5776473 + ORR1E LTR MaLR 87 194 -165 6 2045 295 333 66 0 chr1 191419062 191419245 -5776187 + L1MB5 LINE L1 5715 5909 -265 6 2045 965 234 70 106 chr1 191419303 191419775 -5775657 - MT2B LTR ERVL -3 598 6 6 2045 327 213 40 0 chr1 191419877 191419952 -5775480 + L1MB5 LINE L1 6085 6162 -12 6 2045 288 0 0 0 chr1 191420035 191420067 -5775365 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 2045 1382 252 25 16 chr1 191420727 191421042 -5774390 + MTE2b LTR MaLR 21 338 -41 6 2045 271 333 75 52 chr1 191421344 191421556 -5773876 + RMER15 LTR ERVL 356 572 -3 6 2045 867 167 0 0 chr1 191421906 191422068 -5773364 + CT-rich Low_complexity Low_complexity 2 163 0 6 2045 450 278 70 0 chr1 191422464 191422579 -5772853 + B4A SINE B4 2 124 -168 6 2045 396 255 153 100 chr1 191422846 191423016 -5772416 + B4A SINE B4 96 274 -18 6 2045 577 268 106 32 chr1 191423254 191423443 -5771989 + B4A SINE B4 4 206 -86 6 2045 259 340 105 75 chr1 191424793 191424993 -5770439 + B4 SINE B4 20 225 -67 6 2045 753 12 0 0 chr1 191424998 191425084 -5770348 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 2045 976 179 67 21 chr1 191425644 191425838 -5769594 + B3 SINE B2 2 204 -12 6 2045 976 234 114 22 chr1 191428619 191428890 -5766542 + MTE2b LTR MaLR 82 377 -2 6 2045 1110 232 19 92 chr1 191429840 191430014 -5765418 - B4A SINE B4 0 292 143 6 2045 2195 129 71 81 chr1 191430014 191430435 -5764997 - MTC LTR MaLR -4 417 1 6 2045 1110 232 19 92 chr1 191430435 191430574 -5764858 - B4A SINE B4 -150 142 2 6 2045 475 168 168 0 chr1 191430578 191430679 -5764753 - PB1D7 SINE Alu 0 120 3 6 2045 198 0 0 0 chr1 191430683 191430705 -5764727 + (T)n Simple_repeat Simple_repeat 1 22 0 6 2045 202 158 26 0 chr1 191430755 191430793 -5764639 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 2045 373 308 20 5 chr1 191432990 191433192 -5762240 + L1M2 LINE L1 5156 5360 -783 6 2045 363 294 48 62 chr1 191433437 191433582 -5761850 + L1MD1 LINE L1 5164 5306 -840 6 2045 583 237 76 0 chr1 191433631 191433762 -5761670 + B1_Mur2 SINE Alu 1 141 -8 6 2045 821 62 9 0 chr1 191433796 191433908 -5761524 + (TAGA)n Simple_repeat Simple_repeat 3 115 0 6 2045 1338 53 0 0 chr1 191433924 191434095 -5761337 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 6 2045 365 286 92 17 chr1 191434103 191434277 -5761155 + L1MD1 LINE L1 5386 5572 -670 6 2045 347 321 89 22 chr1 191434298 191434569 -5760863 + L1MD1 LINE L1 5631 5919 -323 6 2045 972 265 9 0 chr1 191435196 191435415 -5760017 - ID_B1 SINE B4 -3 221 1 6 2045 417 184 506 0 chr1 191435444 191435531 -5759901 + PB1D9 SINE Alu 2 132 -16 6 2045 270 194 0 0 chr1 191435567 191435629 -5759803 + A-rich Low_complexity Low_complexity 1 62 0 6 2045 22 0 0 0 chr1 191435658 191435680 -5759752 + AT_rich Low_complexity Low_complexity 1 22 0 6 2045 408 250 27 18 chr1 191436019 191436129 -5759303 + PB1D10 SINE Alu 6 116 -1 6 2045 717 250 56 21 chr1 191436225 191436467 -5758965 + Lx7 LINE L1 6857 7117 -356 6 2045 2432 155 104 48 chr1 191437405 191437941 -5757491 + RMER2 LTR ERV1 2 567 0 6 2045 352 368 19 23 chr1 191438005 191438190 -5757242 - MIRb SINE MIR -84 184 1 6 2045 810 272 22 0 chr1 191438313 191438497 -5756935 - B3 SINE B2 -28 188 1 6 2045 876 89 0 0 chr1 191439779 191439902 -5755530 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 6 2045 913 239 75 18 chr1 191440556 191440782 -5754650 + MLT2B2 LTR ERVL 17 255 -260 6 2045 1292 252 67 44 chr1 191440961 191441322 -5754110 + MTEb LTR MaLR 3 371 -8 6 2045 379 242 89 52 chr1 191441389 191441524 -5753908 + B1_Mur3 SINE Alu 10 149 0 6 2045 394 167 58 36 chr1 191441620 191441711 -5753721 + B3 SINE B2 1 99 -94 6 2045 320 216 346 31 chr1 191441855 191441985 -5753447 + B3 SINE B2 9 179 -37 6 2045 237 65 0 0 chr1 191443622 191443653 -5751779 + (G)n Simple_repeat Simple_repeat 1 31 0 6 2045 210 136 0 0 chr1 191443678 191443722 -5751710 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 2045 1001 134 122 0 chr1 191443782 191443946 -5751486 + B2_Mm2 SINE B2 2 185 -10 6 2045 719 181 0 9 chr1 191444157 191444381 -5751051 + (CA)n Simple_repeat Simple_repeat 1 221 0 6 2045 259 243 221 10 chr1 191444595 191444699 -5750733 + L1MC3 LINE L1 5923 6048 -1737 7 2045 676 199 43 120 chr1 191444722 191444956 -5750476 + B3 SINE B2 1 216 0 7 2045 802 221 15 20 chr1 191444974 191445173 -5750259 - B3A SINE B2 0 198 1 7 2045 277 227 15 29 chr1 191445175 191445243 -5750189 + L1MC3 LINE L1 6060 6126 -1869 7 2045 300 330 138 40 chr1 191445334 191445631 -5749801 + L1MC3 LINE L1 6182 6507 -1278 7 2045 471 277 34 51 chr1 191445653 191445828 -5749604 - Lx8 LINE L1 -1112 6361 6190 7 2045 24 0 0 0 chr1 191446546 191446570 -5748862 + AT_rich Low_complexity Low_complexity 1 24 0 7 2045 27 0 0 0 chr1 191446613 191446640 -5748792 + AT_rich Low_complexity Low_complexity 1 27 0 7 2045 293 324 28 9 chr1 191446669 191446778 -5748654 - PB1D10 SINE Alu -1 116 6 7 2045 409 164 0 40 chr1 191447818 191447894 -5747538 + PB1D10 SINE Alu 9 81 -36 7 2045 1348 285 83 10 chr1 191449755 191450143 -5745289 + Lx8 LINE L1 6937 7336 -137 7 2045 288 0 0 0 chr1 191450143 191450175 -5745257 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 7 2045 1348 285 83 10 chr1 191450175 191450279 -5745153 + Lx8 LINE L1 7337 7464 -9 7 2045 1342 78 10 20 chr1 191450338 191450533 -5744899 + B2_Mm1t SINE B2 1 193 0 7 2045 365 303 68 8 chr1 191451169 191451302 -5744130 + B1F1 SINE Alu 1 141 -8 7 2045 627 154 84 8 chr1 191452440 191452571 -5742861 + B3 SINE B2 76 216 0 7 2045 328 281 38 83 chr1 191452720 191452852 -5742580 - B1F2 SINE Alu -5 144 19 7 2045 1429 95 16 0 chr1 191453120 191453310 -5742122 - B2_Mm2 SINE B2 -2 193 1 7 2045 259 279 23 23 chr1 191454243 191454331 -5741101 + MTE2a LTR MaLR 278 365 -14 7 2045 1388 75 37 0 chr1 191454349 191454537 -5740895 + B2_Mm2 SINE B2 1 195 0 7 2045 387 257 88 0 chr1 191455159 191455272 -5740160 - RSINE1 SINE B4 -38 127 5 7 2045 274 304 21 42 chr1 191455617 191455713 -5739719 + B3A SINE B2 89 182 -16 7 2045 309 26 0 0 chr1 191455716 191455754 -5739678 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 2045 425 338 21 0 chr1 191457045 191457190 -5738242 + B1F SINE Alu 2 149 0 7 2045 210 258 149 15 chr1 191457209 191457276 -5738156 + ID4_ SINE ID 3 78 -5 7 2045 453 19 0 0 chr1 191457650 191457704 -5737728 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 2045 240 321 0 0 chr1 191458128 191458209 -5737223 - MamRep1161 DNA TcMar -863 94 14 7 2045 630 279 79 17 chr1 191458479 191458720 -5736712 + B4A SINE B4 2 257 -35 7 2045 264 226 56 47 chr1 191458769 191458876 -5736556 + MTE2b LTR MaLR 244 351 -28 7 2045 7180 42 0 0 chr1 191458876 191459719 -5735713 - L1Md_F3 LINE L1 -86 5797 4955 7 2045 6427 47 7 1 chr1 191459719 191460494 -5734938 + L1Md_F3 LINE L1 5806 6584 0 7 2045 950 105 26 0 chr1 191461775 191461927 -5733505 + RMER19B LTR ERVK 1 156 -581 7 2045 912 56 8 0 chr1 191461954 191462079 -5733353 - B1_Mm SINE Alu -5 142 17 7 2045 1819 191 96 79 chr1 191462077 191462661 -5732771 + RMER19B LTR ERVK 121 664 -238 7 2045 2915 135 81 10 chr1 191462714 191463292 -5732140 + RMER6A LTR ERVK 72 690 -66 7 2045 368 164 60 0 chr1 191463776 191463843 -5731589 + RMER6A LTR ERVK 685 755 -1 7 2045 208 159 0 22 chr1 191464107 191464152 -5731280 + C-rich Low_complexity Low_complexity 3 46 0 7 2045 881 206 88 41 chr1 191464152 191464446 -5730986 + RCHARR1 DNA MER1_type 531 838 -136 7 2045 1643 47 0 0 chr1 191464480 191464673 -5730759 - B2_Mm1a SINE B2 0 193 1 7 2045 323 245 96 0 chr1 191464840 191464934 -5730498 + PB1D9 SINE Alu 4 106 -14 7 2045 268 246 15 0 chr1 191466758 191466823 -5728609 - ID4 SINE ID -16 67 2 7 2045 261 294 26 60 chr1 191466825 191466941 -5728491 - ID_B1 SINE B4 -1 223 112 7 2045 244 328 43 8 chr1 191466841 191466958 -5728474 - B1F1 SINE Alu -14 135 15 7 2045 272 256 126 11 chr1 191467663 191467750 -5727682 + B4 SINE B4 133 229 -63 7 2045 286 286 35 57 chr1 191467912 191468053 -5727379 + B1F SINE Alu 5 142 -7 7 2045 211 274 25 76 chr1 191468064 191468143 -5727289 + ID4_ SINE ID 3 77 -6 7 2045 574 222 8 0 chr1 191470129 191470246 -5725186 + ID_B1 SINE B4 76 193 -31 7 2045 528 157 97 24 chr1 191471469 191471593 -5723839 + B1_Mus2 SINE Alu 15 147 0 7 2045 186 43 0 0 chr1 191471810 191471833 -5723599 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 2045 403 283 35 0 chr1 191471846 191471959 -5723473 + PB1D10 SINE Alu 1 117 0 7 2045 1330 107 11 5 chr1 191473039 191473227 -5722205 - B2_Mm2 SINE B2 -6 189 1 7 2045 234 0 0 0 chr1 191473696 191473722 -5721710 + (CACTG)n Simple_repeat Simple_repeat 1 26 0 7 2045 458 124 0 28 chr1 191473836 191473944 -5721488 + G-rich Low_complexity Low_complexity 3 107 0 7 2045 696 12 0 0 chr1 191473945 191474026 -5721406 + (GAGAA)n Simple_repeat Simple_repeat 5 85 0 7 2045 899 92 43 0 chr1 191474028 191474169 -5721263 + B1_Mus1 SINE Alu 2 148 0 7 2045 21 57 0 0 chr1 191474640 191474675 -5720757 + AT_rich Low_complexity Low_complexity 1 35 0 7 2045 237 65 0 0 chr1 191475261 191475292 -5720140 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 2045 212 97 0 0 chr1 191475300 191475331 -5720101 - B1_Mus1 SINE Alu -116 32 2 7 2045 2045 164 18 39 chr1 191479856 191480242 -5715190 + ORR1C1 LTR MaLR 1 378 0 7 2045 28 71 0 0 chr1 191484085 191484141 -5711291 + AT_rich Low_complexity Low_complexity 1 56 0 7 2045 238 263 0 0 chr1 191484295 191484371 -5711061 + T-rich Low_complexity Low_complexity 1 76 0 7 2045 1276 27 0 0 chr1 191484404 191484550 -5710882 + B1_Mus2 SINE Alu 2 147 0 7 2045 232 217 74 7 chr1 191485049 191485129 -5710303 + PB1 SINE Alu 27 116 -1 7 2045 342 286 60 0 chr1 191485689 191485773 -5709659 + RSINE1 SINE B4 3 91 -74 7 2045 255 31 0 0 chr1 191485798 191485830 -5709602 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 2045 310 304 0 107 chr1 191486970 191487110 -5708322 - RSINE1 SINE B4 0 165 41 7 2045 343 200 42 14 chr1 191487119 191487190 -5708242 - B1_Mur2 SINE Alu -56 93 21 7 2045 26 30 0 0 chr1 191490725 191490758 -5704674 + AT_rich Low_complexity Low_complexity 1 33 0 7 2045 249 33 0 0 chr1 191491054 191491084 -5704348 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 7 2045 180 0 0 0 chr1 191491084 191491104 -5704328 + (GA)n Simple_repeat Simple_repeat 1 20 0 7 2045 1359 161 4 9 chr1 191491229 191491455 -5703977 - URR1A DNA MER1_type 0 226 2 7 2045 265 286 0 49 chr1 191491533 191491614 -5703818 + B3 SINE B2 112 188 -28 7 2045 2043 115 41 25 chr1 191491653 191491973 -5703459 - Lx2 LINE L1 -1 6996 6672 7 2045 370 173 60 111 chr1 191492168 191492285 -5703147 + RSINE1 SINE B4 55 165 0 7 2045 230 0 33 0 chr1 191492293 191492323 -5703109 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 2045 256 246 0 14 chr1 191492589 191492659 -5702773 + GA-rich Low_complexity Low_complexity 2 70 0 7 2045 1382 255 113 2 chr1 191493499 191493896 -5701536 + Lx8 LINE L1 7008 7448 -25 7 2045 28 29 0 0 chr1 191493900 191493935 -5701497 + AT_rich Low_complexity Low_complexity 1 35 0 7 2045 397 267 126 21 chr1 191494543 191494826 -5700606 + L1MA6 LINE L1 5937 6253 -47 7 2045 730 265 105 26 chr1 191495422 191495689 -5699743 + B4A SINE B4 1 288 -4 7 2045 275 71 24 0 chr1 191495824 191495866 -5699566 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 2046 689 169 15 30 chr1 191496602 191496736 -5698696 + B1_Mur1 SINE Alu 7 138 -11 7 2046 216 0 0 0 chr1 191496736 191496760 -5698672 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 2046 213 383 38 30 chr1 191497035 191497167 -5698265 + B4 SINE B4 40 172 -120 7 2046 238 86 0 0 chr1 191497167 191497202 -5698230 + RSINE1 SINE B4 92 126 -39 7 2046 533 195 73 0 chr1 191497355 191497478 -5697954 - B1_Mur1 SINE Alu -13 136 5 7 2046 652 159 250 6 chr1 191497837 191498001 -5697431 + B3 SINE B2 2 205 -11 7 2046 406 282 27 54 chr1 191498180 191498384 -5697048 - B4A SINE B4 -20 272 86 7 2046 451 316 56 31 chr1 191498398 191498558 -5696874 - RSINE1 SINE B4 0 165 2 7 2046 303 286 0 38 chr1 191498582 191498662 -5696770 - B4A SINE B4 -212 80 4 7 2046 248 249 165 4 chr1 191498861 191498958 -5696474 + PB1D10 SINE Alu 8 115 -2 7 2046 373 175 150 0 chr1 191499008 191499088 -5696344 - B4A SINE B4 -200 92 1 7 2046 261 0 0 0 chr1 191499338 191499367 -5696065 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 7 2046 948 150 32 32 chr1 191499612 191499798 -5695634 - URR1A DNA MER1_type 0 226 41 7 2046 311 267 58 100 chr1 191499798 191499850 -5695582 + CYRA11_Mm Unknown Y-chromosome 171 398 -219 7 2046 622 252 142 28 chr1 191500610 191501155 -5694277 + L1MDa LINE L1 1909 2617 -4016 1 2046 1170 108 57 0 chr1 191501277 191501453 -5693979 + B2_Mm2 SINE B2 2 187 -8 2 2046 782 283 54 34 chr1 191501454 191501842 -5693590 + L1MDa LINE L1 3874 4269 -2268 1 2046 27 0 0 0 chr1 191502273 191502300 -5693132 + AT_rich Low_complexity Low_complexity 1 27 0 3 2046 268 234 38 25 chr1 191502351 191502430 -5693002 + L2a LINE L2 3342 3421 -5 4 2046 181 191 96 96 chr1 191503794 191503846 -5691586 + L3 LINE CR1 3 54 -4435 5 2046 250 331 0 11 chr1 191504427 191504503 -5690929 - ID4 SINE ID -51 101 29 6 2046 667 276 81 29 chr1 191505333 191505542 -5689890 + ID_B1 SINE B4 5 224 0 7 2046 467 252 0 34 chr1 191505793 191505912 -5689520 - PB1D10 SINE Alu 0 117 3 8 2046 226 263 17 34 chr1 191506025 191506084 -5689348 - RSINE1 SINE B4 -107 58 1 9 2046 318 298 103 40 chr1 191507167 191507293 -5688139 + RSINE1 SINE B4 3 136 -29 1 2046 647 240 22 32 chr1 191508083 191508268 -5687164 + B3A SINE B2 5 187 -11 1 2046 26 30 0 0 chr1 191508268 191508301 -5687131 + AT_rich Low_complexity Low_complexity 1 33 0 1 2046 1171 69 0 0 chr1 191509342 191509487 -5685945 + B1_Mus2 SINE Alu 3 147 0 1 2046 793 185 196 0 chr1 191509541 191509730 -5685702 - URR1A DNA MER1_type 0 226 1 1 2046 731 130 41 0 chr1 191510510 191510633 -5684799 + B1_Mus1 SINE Alu 21 148 0 1 2046 771 235 103 5 chr1 191510942 191511126 -5684306 - Lx5 LINE L1 -5 7045 6844 1 2046 245 114 0 0 chr1 191512627 191512662 -5682770 + 4.5SRNA scRNA scRNA 4 38 -56 1 2046 409 106 47 12 chr1 191512792 191512878 -5682554 + Lx3_Mus LINE L1 6921 7009 0 1 2046 845 210 107 10 chr1 191512907 191513104 -5682328 + B3 SINE B2 1 216 0 1 2046 265 318 100 27 chr1 191513218 191513328 -5682104 - RMER12 LTR ERVK -18 1304 1187 2 2046 4032 202 181 27 chr1 191513328 191514409 -5681023 - RMER12 LTR ERVK -74 1248 1 2 2046 363 336 66 78 chr1 191514823 191515081 -5680351 - L1ME2 LINE L1 -2 6162 5908 2 2046 1309 226 161 100 chr1 191515084 191515635 -5679797 - RMER4B LTR ERVK 0 585 1 2 2046 252 211 110 50 chr1 191515849 191515949 -5679483 - L1M5 LINE L1 -2508 3638 3533 2 2046 477 170 120 0 chr1 191516231 191516331 -5679101 + B1F SINE Alu 12 123 -26 2 2046 412 244 75 42 chr1 191516331 191516351 -5679081 + ID_B1 SINE B4 93 216 -8 2 2046 436 253 11 2 chr1 191516362 191516462 -5678970 + B4 SINE B4 2 106 -59 2 2046 651 156 14 15 chr1 191516473 191516598 -5678834 + ORR1C1 LTR MaLR 18 152 -215 2 2046 1476 34 0 0 chr1 191516598 191516776 -5678656 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 2046 651 149 9 0 chr1 191516776 191516792 -5678640 + ORR1C1 LTR MaLR 153 168 -199 2 2046 546 125 46 40 chr1 191516794 191516969 -5678463 + CT-rich Low_complexity Low_complexity 2 177 0 3 2046 1022 178 81 5 chr1 191516986 191517184 -5678248 + ORR1C1 LTR MaLR 166 378 0 2 2046 1540 189 137 19 chr1 191517681 191518054 -5677378 + MTD LTR MaLR 3 419 0 3 2046 351 58 57 14 chr1 191518090 191518160 -5677272 + (TTTTG)n Simple_repeat Simple_repeat 1 73 0 3 2046 786 126 17 0 chr1 191518160 191518279 -5677153 - B1_Mur4 SINE Alu -1 149 29 3 2046 435 221 51 42 chr1 191518279 191518397 -5677035 - PB1D9 SINE Alu 0 120 2 3 2046 250 253 13 13 chr1 191518579 191518655 -5676777 - ID4 SINE ID -4 79 4 3 2046 188 333 215 19 chr1 191518793 191518998 -5676434 + L2 LINE L2 2333 2577 -842 3 2046 751 171 39 0 chr1 191519538 191519667 -5675765 + B1_Mur4 SINE Alu 7 140 -10 3 2046 984 146 0 0 chr1 191520097 191520241 -5675191 + B1_Mur4 SINE Alu 1 144 -6 3 2046 288 250 152 14 chr1 191520617 191520755 -5674677 + ERVL-E-int LTR ERVL 3183 3339 -2328 3 2046 1901 181 49 18 chr1 191520977 191521366 -5674066 - MTD LTR MaLR -14 405 5 4 2046 572 218 36 133 chr1 191521414 191521610 -5673822 + MLT1B LTR MaLR 1 177 -213 4 2046 718 315 46 46 chr1 191521612 191521892 -5673540 + B4A SINE B4 5 284 -8 4 2046 519 356 35 4 chr1 191522093 191522324 -5673108 + MLT1B LTR MaLR 230 467 0 4 2046 197 172 118 59 chr1 191522614 191522682 -5672750 + L3b LINE CR1 187 258 -224 4 2046 743 83 0 9 chr1 191522825 191522934 -5672498 + (TCTCCC)n Simple_repeat Simple_repeat 6 113 0 4 2046 633 171 281 18 chr1 191522967 191523134 -5672298 + B3 SINE B2 3 213 -3 4 2046 243 270 80 13 chr1 191523365 191523440 -5671992 - RSINE1 SINE B4 -84 81 2 4 2046 1212 121 16 0 chr1 191523520 191523702 -5671730 + B2_Mm1a SINE B2 2 186 -7 4 2046 1299 42 0 0 chr1 191524643 191524809 -5670623 + (TA)n Simple_repeat Simple_repeat 2 167 0 4 2046 425 101 56 0 chr1 191525118 191525207 -5670225 + CT-rich Low_complexity Low_complexity 4 97 0 4 2046 216 0 0 0 chr1 191525735 191525759 -5669673 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 5 2046 1988 157 34 36 chr1 191526137 191526493 -5668939 - RLTR24 LTR ERV1 -174 355 1 5 2046 389 340 108 24 chr1 191526515 191526765 -5668667 + BLACKJACK DNA AcHobo 68 338 -2606 5 2046 715 309 56 28 chr1 191526788 191526812 -5668620 - B4A SINE B4 -1 291 268 5 2046 207 0 0 0 chr1 191526812 191526835 -5668597 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 5 2046 715 309 56 28 chr1 191526835 191527060 -5668372 - B4A SINE B4 -25 267 35 5 2046 367 350 119 58 chr1 191527088 191527498 -5667934 + BLACKJACK DNA AcHobo 420 854 -2090 5 2046 718 269 36 31 chr1 191527617 191527809 -5667623 - MTEb LTR MaLR -160 219 27 5 2046 647 180 193 50 chr1 191527813 191527951 -5667481 + B3 SINE B2 4 153 -63 5 2046 297 0 0 0 chr1 191527951 191527984 -5667448 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 2046 647 180 193 50 chr1 191527984 191528026 -5667406 + B3 SINE B2 154 210 -6 5 2046 1137 88 0 0 chr1 191528058 191528205 -5667227 + B1_Mus2 SINE Alu 1 147 0 5 2046 257 274 28 27 chr1 191528880 191528973 -5666459 + PB1D10 SINE Alu 5 91 -58 5 2046 183 295 50 59 chr1 191529135 191529236 -5666196 + MIRb SINE MIR 163 262 -6 6 2046 195 191 0 42 chr1 191531005 191531076 -5664356 + G-rich Low_complexity Low_complexity 1 68 0 6 2046 360 0 0 0 chr1 191531172 191531212 -5664220 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 2046 414 0 0 0 chr1 191531212 191531257 -5664175 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 2046 198 0 0 0 chr1 191532130 191532152 -5663280 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6 2046 487 248 131 8 chr1 191533806 191533928 -5661504 + ID_B1 SINE B4 88 224 0 6 2046 270 0 0 0 chr1 191533989 191534019 -5661413 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6 2046 970 281 78 11 chr1 191534064 191534348 -5661084 + MLT2C1 LTR ERVL 6 308 -89 6 2046 284 231 60 30 chr1 191534675 191534742 -5660690 + ID4_ SINE ID 1 69 -14 6 2046 336 296 9 0 chr1 191535258 191535373 -5660059 - L1_Mur3 LINE L1 -2131 3749 3634 6 2046 477 0 0 0 chr1 191535825 191535878 -5659554 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 2046 297 299 156 18 chr1 191535884 191535993 -5659439 - RSINE1 SINE B4 -40 125 2 7 2046 304 166 104 58 chr1 191536183 191536284 -5659148 + PB1 SINE Alu 26 127 0 7 2046 301 22 21 21 chr1 191536860 191536907 -5658525 + (TTG)n Simple_repeat Simple_repeat 2 48 0 7 2046 232 262 16 0 chr1 191537192 191537253 -5658179 + L1M3 LINE L1 3767 3828 -2312 7 2046 380 202 122 28 chr1 191537318 191537425 -5658007 - PB1D7 SINE Alu -3 117 1 7 2046 261 0 0 0 chr1 191537426 191537455 -5657977 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 2046 275 254 0 17 chr1 191537646 191537706 -5657726 - ID4 SINE ID -22 61 3 7 2046 812 196 14 0 chr1 191537755 191537898 -5657534 - B1_Mur4 SINE Alu -1 149 5 7 2046 183 74 0 0 chr1 191537937 191537957 -5657475 + (A)n Simple_repeat Simple_repeat 1 20 0 7 2046 1158 61 0 7 chr1 191537957 191538105 -5657327 + B1_Mus2 SINE Alu 1 147 0 8 2046 183 74 0 0 chr1 191538105 191538111 -5657321 + (A)n Simple_repeat Simple_repeat 1 6 0 8 2046 213 139 0 0 chr1 191538365 191538401 -5657031 - MIR SINE MIR -168 94 59 8 2046 1011 198 61 0 chr1 191538687 191538884 -5656548 - B3 SINE B2 -6 210 2 8 2046 1449 44 44 6 chr1 191539100 191539283 -5656149 + B2_Mm2 SINE B2 2 191 -4 8 2046 278 271 0 0 chr1 191539295 191539354 -5656078 - B4 SINE B4 -49 243 185 8 2046 230 173 250 0 chr1 191539406 191539458 -5655974 - B4 SINE B4 -227 65 1 8 2046 263 312 102 50 chr1 191539589 191539892 -5655540 - L2a LINE L2 -192 3234 2916 8 2046 610 339 28 0 chr1 191539949 191540167 -5655265 + ID_B1 SINE B4 1 224 0 8 2046 262 402 0 0 chr1 191540971 191541083 -5654349 + PB1D10 SINE Alu 1 112 -5 8 2046 820 195 0 26 chr1 191541090 191541243 -5654189 + B1_Mur2 SINE Alu 1 149 0 9 2046 210 37 0 0 chr1 191541292 191541319 -5654113 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 2046 183 80 0 0 chr1 191541444 191541469 -5653963 + (T)n Simple_repeat Simple_repeat 1 25 0 9 2046 399 292 17 64 chr1 191541477 191541649 -5653783 - RSINE1 SINE B4 0 165 2 9 2046 208 281 34 45 chr1 191541854 191542033 -5653399 + (CTCGG)n Simple_repeat Simple_repeat 4 180 0 9 2046 609 242 58 37 chr1 191542055 191542244 -5653188 - B4 SINE B4 -98 194 2 8 2046 758 49 20 0 chr1 191542469 191542571 -5652861 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 9 2046 201 204 88 53 chr1 191542760 191542817 -5652615 - L4 LINE RTE -640 1389 1331 9 2046 715 309 58 26 chr1 191542875 191543101 -5652331 + B4A SINE B4 58 290 -2 9 2046 383 68 17 0 chr1 191543117 191543176 -5652256 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 2046 560 296 89 24 chr1 191543179 191543425 -5652007 - MLT1B LTR MaLR -128 262 1 9 2046 588 95 0 0 chr1 191544056 191544140 -5651292 + (TCCC)n Simple_repeat Simple_repeat 3 86 0 1 2046 214 140 21 85 chr1 191544163 191544210 -5651222 - ID4_ SINE ID -38 45 2 1 2046 300 308 99 88 chr1 191544272 191544303 -5651129 + B4 SINE B4 56 93 -199 1 2046 1249 109 16 37 chr1 191544303 191544493 -5650939 - B2_Mm2 SINE B2 -8 187 2 1 2046 662 207 37 7 chr1 191544493 191544629 -5650803 + B1_Mur3 SINE Alu 10 149 0 1 2046 1161 65 0 0 chr1 191545121 191545260 -5650172 + B1_Mus1 SINE Alu 1 139 -9 1 2046 1636 31 0 20 chr1 191545919 191546115 -5649317 - B2_Mm1a SINE B2 0 193 2 1 2046 393 275 113 47 chr1 191546156 191546427 -5649005 - ORR1E LTR MaLR -30 329 10 1 2046 199 0 0 61 chr1 191546780 191546813 -5648619 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 2046 663 215 21 7 chr1 191546884 191547029 -5648403 + MTE2b LTR MaLR 20 166 -213 1 2046 290 200 32 206 chr1 191547032 191547158 -5648274 + MTE2b LTR MaLR 273 376 -3 1 2046 1032 241 14 43 chr1 191547223 191547505 -5647927 - B4 SINE B4 -18 274 1 1 2046 1146 75 0 0 chr1 191547534 191547680 -5647752 - B1_Mus1 SINE Alu 0 148 3 1 2046 232 262 0 16 chr1 191547877 191547939 -5647493 + L1MD LINE L1 5779 5839 -520 1 2046 778 250 112 26 chr1 191548175 191548442 -5646990 - B4A SINE B4 0 292 3 1 2046 597 172 0 0 chr1 191548771 191548951 -5646481 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 2046 761 64 39 34 chr1 191549004 191549182 -5646250 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 1 2046 681 238 105 98 chr1 191549259 191549525 -5645907 - B4A SINE B4 0 292 25 1 2046 561 221 137 0 chr1 191549534 191549665 -5645767 - B1F SINE Alu 0 149 1 1 2046 297 0 0 0 chr1 191549865 191549898 -5645534 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 2046 256 286 84 19 chr1 191550258 191550365 -5645067 - MIRb SINE MIR -154 114 1 1 2046 409 213 23 11 chr1 191550886 191550980 -5644452 - PB1D10 SINE Alu -1 116 13 1 2046 1050 64 42 28 chr1 191554051 191554195 -5641237 + B1_Mus1 SINE Alu 3 148 0 1 2046 232 174 22 0 chr1 191555291 191555337 -5640095 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 2046 303 28 0 0 chr1 191555399 191555435 -5639997 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 2046 340 218 128 0 chr1 191555449 191555527 -5639905 - RSINE1 SINE B4 -70 95 8 1 2046 193 298 35 35 chr1 191555528 191555615 -5639817 + MIRm SINE MIR 66 152 -124 1 2046 286 179 231 0 chr1 191556648 191556726 -5638706 - PB1D9 SINE Alu -15 105 10 1 2046 832 246 0 71 chr1 191557073 191557283 -5638149 + B3A SINE B2 2 196 -2 1 2046 1363 149 0 27 chr1 191557389 191557610 -5637822 + URR1B DNA MER1_type 11 225 0 1 2046 210 91 0 0 chr1 191559106 191559139 -5636293 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 2046 1135 55 7 0 chr1 191559139 191559285 -5636147 - B1_Mus1 SINE Alu 0 148 2 1 2046 307 221 0 16 chr1 191559178 191559302 -5636130 - ORR1B1-int LTR MaLR -755 754 633 1 2046 231 88 0 0 chr1 191559431 191559465 -5635967 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 2046 449 330 0 23 chr1 191559801 191560157 -5635275 + C-rich Low_complexity Low_complexity 1 347 0 1 2046 1006 138 22 22 chr1 191560327 191560505 -5634927 + B2_Mm2 SINE B2 10 187 -8 1 2046 315 0 0 0 chr1 191560680 191560715 -5634717 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 1 2046 928 229 55 0 chr1 191560722 191560905 -5634527 - B3 SINE B2 -23 193 1 1 2046 578 292 68 38 chr1 191561056 191561319 -5634113 - B4A SINE B4 0 292 22 1 2046 285 238 47 16 chr1 191561268 191561332 -5634100 - ID2 SINE ID -13 70 5 1 2046 684 308 23 49 chr1 191561598 191561834 -5633598 - B4 SINE B4 -2 290 83 1 2046 810 290 173 12 chr1 191562759 191563007 -5632425 + B4A SINE B4 1 288 -4 1 2046 414 0 0 0 chr1 191563105 191563151 -5632281 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 2046 222 37 0 0 chr1 191563368 191563395 -5632037 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 2046 623 232 49 7 chr1 191563404 191563547 -5631885 - MT2B LTR ERVL -88 513 365 1 2046 247 305 126 14 chr1 191564047 191564190 -5631242 - MIRb SINE MIR -6 262 104 1 2046 252 317 40 32 chr1 191565020 191565101 -5630331 + RMER15 LTR ERVL 434 513 -62 1 2046 207 0 0 0 chr1 191565101 191565124 -5630308 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 2046 252 317 40 32 chr1 191565124 191565166 -5630266 + RMER15 LTR ERVL 514 558 -17 1 2046 1029 289 122 35 chr1 191565273 191565815 -5629617 + RMER15-int LTR ERVL 171 759 -4240 1 2046 786 123 192 0 chr1 191566522 191566668 -5628764 + B2_Mm2 SINE B2 19 192 -3 1 2046 525 309 92 46 chr1 191566746 191567028 -5628404 + RMER15-int LTR ERVL 2128 2422 -2577 1 2046 378 241 83 9 chr1 191567165 191567274 -5628158 + RMER15-int LTR ERVL 4216 4332 -667 1 2046 442 84 0 46 chr1 191567653 191567740 -5627692 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1 2046 276 30 0 0 chr1 191567873 191567906 -5627526 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 2046 276 365 17 0 chr1 191568148 191568263 -5627169 - PB1 SINE Alu -8 119 3 1 2046 21 0 0 0 chr1 191568284 191568305 -5627127 + AT_rich Low_complexity Low_complexity 1 21 0 1 2046 315 157 0 0 chr1 191568557 191568627 -5626805 + T-rich Low_complexity Low_complexity 1 70 0 1 2046 799 214 90 52 chr1 191568818 191569030 -5626402 - ID_B1 SINE B4 -2 222 3 1 2046 246 32 0 0 chr1 191569661 191569692 -5625740 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 2046 883 49 8 0 chr1 191569692 191569814 -5625618 - L1_Mus1 LINE L1 -6 6561 6439 1 2046 635 250 55 2 chr1 191569938 191570101 -5625331 - ID_B1 SINE B4 -74 218 48 1 2046 814 181 14 0 chr1 191571935 191572079 -5623353 + B1_Mus2 SINE Alu 2 147 0 1 2046 342 286 0 0 chr1 191572223 191572293 -5623139 + ID_B1 SINE B4 93 162 -62 1 2046 450 36 0 0 chr1 191572654 191572710 -5622722 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 2046 1260 41 0 0 chr1 191573037 191573184 -5622248 - B1_Mus2 SINE Alu 0 147 1 1 2046 592 179 0 0 chr1 191573186 191573281 -5622151 + PB1D9 SINE Alu 15 109 -11 1 2046 417 290 192 107 chr1 191573606 191573934 -5621498 + MTE2a LTR MaLR 1 356 -23 1 2046 771 92 0 0 chr1 191574394 191574503 -5620929 + (TCC)n Simple_repeat Simple_repeat 2 110 0 1 2046 1080 130 0 0 chr1 191575042 191575387 -5620045 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 2046 580 269 23 8 chr1 191575393 191575524 -5619908 - RSINE1 SINE B4 -31 134 2 1 2046 567 78 0 0 chr1 191575731 191575808 -5619624 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1 2046 1352 105 21 0 chr1 191575827 191576018 -5619414 - B2_Mm2 SINE B2 0 195 1 1 2046 633 235 38 8 chr1 191576525 191576658 -5618774 + ID_B1 SINE B4 87 223 -1 1 2046 348 77 0 0 chr1 191576658 191576710 -5618722 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 2046 952 178 117 19 chr1 191577065 191577271 -5618161 - URR1A DNA MER1_type 0 226 1 1 2046 377 215 38 0 chr1 191577405 191577484 -5617948 + HAL1-3A_ME LINE L1 1937 2018 -840 1 2046 330 284 0 0 chr1 191577486 191577634 -5617798 + (CA)n Simple_repeat Simple_repeat 1 148 0 1 2046 438 237 0 0 chr1 191577676 191577794 -5617638 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 2046 522 225 0 0 chr1 191578374 191578552 -5616880 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 2046 768 243 141 30 chr1 191578573 191578620 -5616812 - B4A SINE B4 0 292 216 1 2046 371 0 68 0 chr1 191578620 191578679 -5616753 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 2046 768 243 141 30 chr1 191578679 191578894 -5616538 - B4A SINE B4 -77 215 2 1 2046 482 229 37 0 chr1 191579580 191579689 -5615743 + B1F SINE Alu 5 117 -32 1 2046 263 274 14 0 chr1 191579857 191579930 -5615502 - ID4_ SINE ID -9 74 1 1 2046 538 280 68 79 chr1 191580057 191580247 -5615185 - B4A SINE B4 -58 234 47 1 2046 198 0 0 0 chr1 191580957 191580979 -5614453 + (A)n Simple_repeat Simple_repeat 1 22 0 1 2046 498 285 94 12 chr1 191581909 191582069 -5613363 + ID_B1 SINE B4 2 174 -50 1 2046 367 212 138 0 chr1 191582007 191582087 -5613345 + PB1D10 SINE Alu 23 113 -4 1 2046 318 314 133 30 chr1 191582268 191582405 -5613027 + MIR SINE MIR 103 239 -29 1 2046 219 303 45 0 chr1 191583071 191583137 -5612295 - MIRc SINE MIR -78 190 122 1 2046 300 384 64 6 chr1 191583248 191583421 -5612011 - MER102b DNA MER1_type -86 255 73 1 2046 872 217 27 5 chr1 191583423 191583608 -5611824 - B3 SINE B2 0 216 28 1 2046 208 259 0 0 chr1 191583924 191583978 -5611454 + T-rich Low_complexity Low_complexity 1 54 0 1 2046 351 0 0 0 chr1 191583985 191584024 -5611408 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 2046 1156 37 15 0 chr1 191584027 191584161 -5611271 - B1_Mus1 SINE Alu -12 136 1 1 2046 467 278 121 18 chr1 191584231 191584396 -5611036 + B3 SINE B2 1 182 -34 1 2046 472 234 116 65 chr1 191584446 191584504 -5610928 - B4 SINE B4 0 292 228 1 2046 195 42 0 0 chr1 191584504 191584528 -5610904 + (TCCG)n Simple_repeat Simple_repeat 2 25 0 1 2046 472 234 116 65 chr1 191584528 191584624 -5610808 - B4 SINE B4 -65 227 131 1 2046 324 0 0 0 chr1 191585286 191585322 -5610110 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 2046 261 0 0 0 chr1 191585588 191585617 -5609815 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 2046 581 276 37 7 chr1 191585997 191586132 -5609300 + B3 SINE B2 2 140 -76 1 2046 288 0 0 0 chr1 191586150 191586182 -5609250 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 2046 840 281 69 15 chr1 191586374 191586648 -5608784 - B4 SINE B4 -3 289 1 1 2046 585 232 48 21 chr1 191586653 191586798 -5608634 - B1F SINE Alu 0 149 1 1 2046 748 305 52 34 chr1 191587128 191587396 -5608036 - B4A SINE B4 0 292 20 1 2046 210 37 0 0 chr1 191587453 191587480 -5607952 + (C)n Simple_repeat Simple_repeat 1 27 0 1 2046 225 0 0 0 chr1 191588112 191588137 -5607295 + (GGGAGA)n Simple_repeat Simple_repeat 2 26 0 1 2046 414 57 0 0 chr1 191588714 191588767 -5606665 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 2046 2079 97 92 27 chr1 191588792 191588909 -5606523 - Lx LINE L1 -8 6646 6535 2 2046 180 0 0 0 chr1 191588909 191588929 -5606503 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 2 2046 2079 97 92 27 chr1 191588929 191589149 -5606283 - Lx LINE L1 -120 6534 6289 2 2046 342 250 324 0 chr1 191589624 191589772 -5605660 - ID_B1 SINE B4 -28 196 1 2 2046 22 56 0 0 chr1 191590280 191590316 -5605116 + AT_rich Low_complexity Low_complexity 1 36 0 2 2046 787 188 25 20 chr1 191590316 191590477 -5604955 + B1_Mur3 SINE Alu 17 311 0 2 2046 778 258 22 40 chr1 191590896 191591118 -5604314 + ID_B1 SINE B4 5 222 -2 2 2046 252 233 0 0 chr1 191592140 191592213 -5603219 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 2046 189 0 0 0 chr1 191594375 191594396 -5601036 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2 2046 601 255 50 19 chr1 191594642 191594802 -5600630 - B4 SINE B4 -1 291 127 2 2046 453 252 60 15 chr1 191596133 191596266 -5599166 - B1F1 SINE Alu -6 143 5 2 2046 343 221 44 55 chr1 191596810 191596901 -5598531 - B4A SINE B4 -201 91 2 2 2046 1196 43 0 0 chr1 191596997 191597135 -5598297 - B1_Mus2 SINE Alu -9 138 1 2 2046 828 232 180 35 chr1 191598071 191598326 -5597106 - B4 SINE B4 0 292 1 2 2046 501 94 0 0 chr1 191598651 191598736 -5596696 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 2046 210 37 0 0 chr1 191599710 191599737 -5595695 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 2046 353 261 77 63 chr1 191599905 191600048 -5595384 - RSINE1 SINE B4 -19 146 2 2 2046 431 313 9 0 chr1 191600126 191600241 -5595191 - PB1D10 SINE Alu -1 116 1 2 2046 506 220 36 18 chr1 191600525 191600636 -5594796 - PB1D7 SINE Alu -7 113 1 2 2046 232 216 0 89 chr1 191601075 191601131 -5594301 - PB1D7 SINE Alu -9 111 61 2 2046 252 0 0 0 chr1 191602724 191602752 -5592680 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 2046 207 88 0 0 chr1 191603534 191603568 -5591864 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 2 2046 267 173 0 0 chr1 191603790 191603842 -5591590 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 2046 225 302 0 0 chr1 191604041 191604094 -5591338 + polypyrimidine Low_complexity Low_complexity 3 55 0 2 2046 325 252 9 132 chr1 191604104 191604218 -5591214 - PB1D10 SINE Alu -7 110 11 2 2046 304 232 156 74 chr1 191604218 191604239 -5591193 - ID_B1 SINE B4 -7 217 72 2 2046 207 0 0 0 chr1 191604419 191604442 -5590990 + (A)n Simple_repeat Simple_repeat 1 23 0 2 2046 330 229 77 54 chr1 191604520 191604659 -5590773 - B1F2 SINE Alu -3 146 1 2 2046 772 249 38 22 chr1 191604664 191604849 -5590583 - B3A SINE B2 -1 197 10 2 2046 416 283 29 53 chr1 191604872 191605081 -5590351 - L1MC1 LINE L1 0 6333 6130 2 2046 320 280 7 0 chr1 191605105 191605255 -5590177 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 2046 576 281 32 55 chr1 191605301 191605569 -5589863 - B4A SINE B4 -30 262 1 2 2046 284 282 7 149 chr1 191605935 191606211 -5589221 - L1_Rod LINE L1 -537 5760 5455 2 2046 878 173 178 0 chr1 191606312 191606503 -5588929 - URR1B DNA MER1_type 0 225 1 2 2046 216 204 0 0 chr1 191606572 191606616 -5588816 + T-rich Low_complexity Low_complexity 1 44 0 2 2046 202 254 0 56 chr1 191607325 191607396 -5588036 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 2 2046 276 272 25 0 chr1 191607415 191607496 -5587936 + B2_Mm2 SINE B2 2 84 -111 2 2046 533 189 109 47 chr1 191607593 191607721 -5587711 + B4A SINE B4 137 272 -20 2 2046 917 133 50 22 chr1 191607914 191608100 -5587332 - B3 SINE B2 0 193 1 2 2046 364 244 0 0 chr1 191609656 191609738 -5585694 + ID2 SINE ID 1 82 -1 2 2046 591 181 144 55 chr1 191609988 191610134 -5585298 - RSINE1 SINE B4 -4 161 3 2 2046 275 0 29 0 chr1 191610416 191610451 -5584981 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 2046 415 264 226 17 chr1 191611340 191611579 -5583853 - B4 SINE B4 -3 289 1 2 2046 198 319 33 59 chr1 191612458 191612611 -5582821 + MIR3 SINE MIR 47 195 -13 2 2046 504 266 179 29 chr1 191612871 191613111 -5582321 + B4A SINE B4 4 279 -13 2 2046 958 79 0 78 chr1 191613146 191613339 -5582093 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 2046 475 135 21 0 chr1 191613351 191613447 -5581985 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 2046 204 111 0 0 chr1 191613482 191613518 -5581914 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 2046 1381 191 154 17 chr1 191614421 191614778 -5580654 - MTD LTR MaLR -1 418 13 2 2046 598 264 7 28 chr1 191614790 191614934 -5580498 + RSINE1 SINE B4 11 151 -14 2 2046 411 21 0 0 chr1 191614970 191615018 -5580414 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 2046 213 39 0 0 chr1 191615018 191615043 -5580389 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 2 2046 231 308 0 0 chr1 191615963 191616041 -5579391 + ID4 SINE ID 1 78 -5 2 2046 823 246 108 11 chr1 191616069 191616356 -5579076 - ORR1E LTR MaLR -41 318 4 2 2046 353 286 48 0 chr1 191617416 191617542 -5577890 - ID_B1 SINE B4 -92 132 1 2 2046 269 306 0 0 chr1 191617552 191617624 -5577808 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 2046 1086 128 0 0 chr1 191617732 191617904 -5577528 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 2 2046 240 272 98 0 chr1 191617904 191617996 -5577436 - L1M2 LINE L1 -483 5814 5714 2 2046 258 261 147 0 chr1 191618062 191618190 -5577242 - L1M2 LINE L1 -686 5626 5481 2 2046 277 289 57 16 chr1 191618207 191618330 -5577102 - L1M2 LINE L1 -854 5443 5316 2 2046 195 100 0 0 chr1 191618548 191618578 -5576854 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 2046 963 198 47 0 chr1 191618726 191618918 -5576514 + B3 SINE B2 2 202 -14 2 2046 387 0 0 0 chr1 191619265 191619308 -5576124 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 2046 527 226 35 0 chr1 191619774 191619889 -5575543 - PB1D7 SINE Alu -1 119 1 2 2046 358 287 130 0 chr1 191620038 191620153 -5575279 - B4A SINE B4 -161 131 2 2 2046 258 152 0 0 chr1 191620697 191620756 -5574676 + GA-rich Low_complexity Low_complexity 1 59 0 2 2046 306 0 0 0 chr1 191621287 191621321 -5574111 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 2046 717 231 84 12 chr1 191621823 191622073 -5573359 + B4 SINE B4 3 270 -22 2 2046 207 0 0 0 chr1 191623228 191623251 -5572181 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 2046 201 213 0 0 chr1 191623404 191623451 -5571981 + CT-rich Low_complexity Low_complexity 3 49 0 2 2046 321 296 52 52 chr1 191623498 191623651 -5571781 + B4 SINE B4 4 156 -136 2 2046 640 254 12 6 chr1 191623908 191624074 -5571358 + B4A SINE B4 112 278 -14 2 2046 396 0 0 0 chr1 191624080 191624124 -5571308 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 2046 444 37 0 0 chr1 191624668 191624722 -5570710 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 2046 747 261 46 28 chr1 191624845 191625062 -5570370 + B4A SINE B4 1 221 -71 2 2046 222 315 14 0 chr1 191625812 191625885 -5569547 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 2046 517 321 66 22 chr1 191625887 191626158 -5569274 - B4A SINE B4 -2 290 8 2 2046 190 0 32 32 chr1 191626161 191626192 -5569240 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 2046 263 316 26 0 chr1 191626194 191626270 -5569162 - B4 SINE B4 -74 218 141 2 2046 363 277 54 8 chr1 191626574 191626741 -5568691 - B3A SINE B2 -8 187 8 2 2047 332 338 79 29 chr1 191627381 191627521 -5567911 + MER45A DNA Tip100 1 147 -31 2 2047 413 244 48 82 chr1 191629591 191629738 -5565694 - RSINE1 SINE B4 -21 144 3 2 2047 261 0 0 0 chr1 191630055 191630084 -5565348 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 2047 627 262 88 140 chr1 191630323 191630687 -5564745 - ORR1E LTR MaLR -5 354 10 2 2047 411 240 34 131 chr1 191632037 191632243 -5563189 + B4A SINE B4 107 292 0 2 2047 804 152 0 0 chr1 191632996 191633147 -5562285 + (TCTG)n Simple_repeat Simple_repeat 3 153 0 2 2047 370 293 147 35 chr1 191633147 191633317 -5562115 - B4 SINE B4 0 292 104 2 2047 495 319 111 27 chr1 191633903 191634164 -5561268 + B4A SINE B4 9 291 -1 2 2047 1135 98 21 32 chr1 191634719 191634908 -5560524 - B2_Mm2 SINE B2 -7 188 2 2 2047 459 0 0 0 chr1 191636093 191636144 -5559288 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 2047 237 304 14 0 chr1 191636155 191636224 -5559208 - B4 SINE B4 -222 70 1 2 2047 205 224 0 49 chr1 191636229 191636290 -5559142 + C-rich Low_complexity Low_complexity 4 61 0 2 2047 230 273 0 0 chr1 191636320 191636375 -5559057 - RSINE1 SINE B4 -28 137 83 2 2047 2263 79 3 0 chr1 191636437 191636755 -5558677 - ORR1A2 LTR MaLR -8 319 1 2 2047 189 0 0 0 chr1 191637160 191637181 -5558251 + (GGGA)n Simple_repeat Simple_repeat 2 22 0 2 2047 363 151 27 14 chr1 191637569 191637643 -5557789 - L1MB7 LINE L1 -56 6128 6054 2 2047 639 138 42 12 chr1 191637667 191637835 -5557597 + CT-rich Low_complexity Low_complexity 3 175 0 2 2047 180 77 0 0 chr1 191638178 191638204 -5557228 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 2 2047 577 162 162 0 chr1 191638211 191638322 -5557110 - B1_Mur1 SINE Alu -11 138 10 2 2047 276 217 14 14 chr1 191638496 191638566 -5556866 - Lx5 LINE L1 -458 6592 6523 2 2047 639 121 0 0 chr1 191639158 191639257 -5556175 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 2047 218 231 108 7 chr1 191640489 191640582 -5554850 + MIRc SINE MIR 62 161 -47 2 2047 652 234 96 5 chr1 191642417 191642615 -5552817 + ID_B1 SINE B4 2 217 -7 2 2047 544 252 24 16 chr1 191643795 191643920 -5551512 - B1F SINE Alu -1 148 23 2 2047 249 139 0 0 chr1 191644439 191644482 -5550950 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 2 2047 388 246 123 29 chr1 191644484 191644622 -5550810 + B4A SINE B4 134 284 -8 3 2047 397 180 23 15 chr1 191644657 191644787 -5550645 + CT-rich Low_complexity Low_complexity 1 131 0 3 2047 232 236 0 90 chr1 191645073 191645250 -5550182 + (TTCA)n Simple_repeat Simple_repeat 3 163 0 3 2047 369 258 0 40 chr1 191646109 191646210 -5549222 - MTE2a LTR MaLR -268 111 15 3 2047 495 285 70 0 chr1 191647061 191647233 -5548199 - B3A SINE B2 -10 188 5 3 2047 237 108 0 0 chr1 191647253 191647290 -5548142 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 2047 290 194 16 0 chr1 191647293 191647355 -5548077 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 2047 852 199 42 16 chr1 191647396 191647585 -5547847 - B3 SINE B2 -22 194 1 3 2047 513 200 320 14 chr1 191647836 191648051 -5547381 + B4A SINE B4 2 282 -10 3 2047 234 296 149 58 chr1 191649179 191649333 -5546099 - L1M3 LINE L1 -1799 4341 4174 3 2047 685 109 47 19 chr1 191649341 191649556 -5545876 + (TCTA)n Simple_repeat Simple_repeat 1 221 0 3 2047 237 260 26 13 chr1 191649558 191649636 -5545796 - L1M3 LINE L1 -1977 4163 4085 3 2047 977 283 67 22 chr1 191649743 191650104 -5545328 + L1M3 LINE L1 4364 4740 -1400 3 2047 2288 142 36 3 chr1 191650118 191650505 -5544927 + MTC LTR MaLR 21 420 -1 3 2047 674 307 165 28 chr1 191650526 191651065 -5544367 + L1M3 LINE L1 4760 5372 -768 3 2047 201 159 18 61 chr1 191652201 191652315 -5543117 + (TATAA)n Simple_repeat Simple_repeat 3 111 0 3 2047 881 275 23 41 chr1 191652595 191652861 -5542571 + B4 SINE B4 32 292 0 3 2047 415 261 23 78 chr1 191653363 191653492 -5541940 - B1F SINE Alu -2 147 26 3 2047 431 326 40 23 chr1 191653533 191653709 -5541723 - MER3 DNA MER1_type -22 187 9 3 2047 291 114 0 0 chr1 191655551 191655595 -5539837 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 2047 369 338 0 46 chr1 191655595 191655747 -5539685 - B4 SINE B4 -27 265 121 3 2047 267 218 133 33 chr1 191656327 191656417 -5539015 + B4 SINE B4 3 101 -191 3 2047 259 280 13 13 chr1 191656752 191656828 -5538604 + CT-rich Low_complexity Low_complexity 4 79 0 3 2047 333 0 0 0 chr1 191656982 191657019 -5538413 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 2047 685 266 141 66 chr1 191657379 191657689 -5537743 - ORR1E LTR MaLR -3 376 1 3 2047 672 265 70 5 chr1 191658868 191659069 -5536363 + B3 SINE B2 3 216 0 3 2047 569 110 11 0 chr1 191659405 191659496 -5535936 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 2047 390 91 0 0 chr1 191659841 191659896 -5535536 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 3 2047 986 234 59 49 chr1 191661238 191661496 -5533936 + B4 SINE B4 2 266 -26 3 2047 504 0 0 0 chr1 191661496 191661552 -5533880 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 2047 986 234 59 49 chr1 191661552 191661581 -5533851 + B4 SINE B4 267 292 0 3 2047 244 261 0 115 chr1 191661841 191661971 -5533461 + G-rich Low_complexity Low_complexity 1 115 0 3 2047 243 0 0 0 chr1 191662480 191662507 -5532925 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 2047 427 255 66 0 chr1 191662507 191662603 -5532829 + ID_B1 SINE B4 121 223 -1 3 2047 329 316 0 0 chr1 191663524 191663600 -5531832 + RMER30 DNA MER1_type 5 80 -122 3 2047 237 33 0 0 chr1 191663600 191663630 -5531802 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 2047 214 239 0 136 chr1 191666716 191666900 -5528532 + (TG)n Simple_repeat Simple_repeat 1 159 0 3 2047 1510 215 89 8 chr1 191668343 191668714 -5526718 + MTD LTR MaLR 19 419 0 3 2047 231 36 0 0 chr1 191668763 191668791 -5526641 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 2047 495 234 32 8 chr1 191669310 191669435 -5525997 - B1_Mur4 SINE Alu -22 128 1 3 2047 220 216 0 0 chr1 191669877 191669928 -5525504 + T-rich Low_complexity Low_complexity 1 51 0 3 2047 222 116 0 0 chr1 191670958 191671001 -5524431 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 2047 312 83 0 0 chr1 191671046 191671094 -5524338 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 2047 255 93 0 0 chr1 191671199 191671242 -5524190 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 2047 223 268 0 0 chr1 191671278 191671334 -5524098 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 2047 718 224 176 53 chr1 191671359 191671604 -5523828 - B4A SINE B4 -14 278 4 3 2047 598 304 62 16 chr1 191672010 191672204 -5523228 - B3 SINE B2 -13 203 1 3 2047 1335 209 219 6 chr1 191672393 191672735 -5522697 - MTD LTR MaLR 0 419 5 3 2047 388 301 12 35 chr1 191673045 191673272 -5522160 + (CATA)n Simple_repeat Simple_repeat 1 221 0 3 2047 21 0 0 0 chr1 191676339 191676360 -5519072 + AT_rich Low_complexity Low_complexity 1 21 0 3 2047 265 325 0 11 chr1 191677397 191677484 -5517948 + PB1D9 SINE Alu 27 112 -8 3 2047 541 292 0 0 chr1 191679183 191679313 -5516119 + RSINE1 SINE B4 1 130 -35 3 2047 364 222 45 53 chr1 191679549 191679682 -5515750 - RCHARR1 DNA MER1_type -518 456 325 3 2047 377 172 72 18 chr1 191680186 191680352 -5515080 + (TATG)n Simple_repeat Simple_repeat 3 177 0 3 2047 464 248 91 72 chr1 191681096 191681305 -5514127 - B3 SINE B2 0 216 4 3 2047 940 128 0 0 chr1 191681563 191681704 -5513728 - B1_Mus1 SINE Alu -2 146 6 3 2047 444 195 0 145 chr1 191681596 191681734 -5513698 - MT2B LTR ERVL -337 264 147 3 2047 237 211 0 0 chr1 191681942 191681994 -5513438 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 2047 1601 52 0 0 chr1 191683282 191683473 -5511959 - B2_Mm1a SINE B2 -1 192 2 3 2047 232 288 12 12 chr1 191683505 191683586 -5511846 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 2047 225 0 0 0 chr1 191683711 191683736 -5511696 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 2047 360 0 0 0 chr1 191683736 191683775 -5511657 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 2047 726 244 43 39 chr1 191683866 191684096 -5511336 - B4A SINE B4 -59 233 3 3 2047 675 108 23 0 chr1 191684603 191684732 -5510700 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 2047 333 0 0 0 chr1 191685511 191685548 -5509884 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 2047 351 0 0 0 chr1 191685548 191685586 -5509846 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 2047 195 42 0 0 chr1 191685752 191685776 -5509656 + (TATG)n Simple_repeat Simple_repeat 4 27 0 3 2047 798 101 0 16 chr1 191685785 191685906 -5509526 - B2_Mm2 SINE B2 -76 119 1 3 2047 842 238 19 19 chr1 191686081 191686287 -5509145 - ID_B1 SINE B4 -10 214 9 3 2047 371 322 0 0 chr1 191687565 191687683 -5507749 + L1MB4 LINE L1 5834 5951 -229 3 2047 681 283 131 35 chr1 191689487 191689747 -5505685 - B4 SINE B4 -6 286 2 3 2047 2047 129 36 62 chr1 191690116 191690537 -5504895 + RMER17C LTR ERVK 1 410 0 3 2047 252 281 0 109 chr1 191690793 191690885 -5504547 - ID4 SINE ID 0 83 2 3 2047 314 297 30 0 chr1 191691971 191692072 -5503360 - B3A SINE B2 -33 165 62 3 2047 218 122 24 24 chr1 191692319 191692361 -5503071 + G-rich Low_complexity Low_complexity 6 47 0 3 2047 307 182 36 18 chr1 191692377 191692489 -5502943 + G-rich Low_complexity Low_complexity 6 119 0 3 2047 256 217 14 68 chr1 191692807 191692881 -5502551 + B4A SINE B4 148 217 -75 3 2047 383 231 0 0 chr1 191692995 191693073 -5502359 + RSINE1 SINE B4 3 80 -85 3 2047 704 210 6 0 chr1 191693095 191693257 -5502175 + GA-rich Low_complexity Low_complexity 2 164 0 3 2047 303 194 66 17 chr1 191693263 191693339 -5502093 + B1F1 SINE Alu 33 120 -7 3 2047 23 33 0 0 chr1 191694073 191694103 -5501329 + AT_rich Low_complexity Low_complexity 1 30 0 3 2047 213 253 152 0 chr1 191695058 191695137 -5500295 - PB1D7 SINE Alu -23 97 7 3 2047 727 247 191 29 chr1 191700664 191700910 -5494522 - B4 SINE B4 -4 288 3 3 2047 288 264 14 0 chr1 191701209 191701281 -5494151 - B3 SINE B2 -140 76 4 3 2047 530 197 99 28 chr1 191701635 191701776 -5493656 + B3A SINE B2 1 151 -47 3 2047 504 250 142 26 chr1 191701766 191701992 -5493440 + ORR1E LTR MaLR 63 314 -45 3 2047 1409 82 27 0 chr1 191701992 191702176 -5493256 - B2_Mm2 SINE B2 -5 190 2 3 2047 348 246 112 119 chr1 191702176 191702227 -5493205 + ORR1E LTR MaLR 297 338 -32 3 2047 347 129 16 16 chr1 191702296 191702359 -5493073 + ORR1E LTR MaLR 313 375 -4 3 2047 678 85 0 0 chr1 191702589 191702683 -5492749 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 3 2047 434 282 73 13 chr1 191705260 191705411 -5490021 + B4 SINE B4 128 287 -5 3 2047 301 310 14 0 chr1 191708563 191708634 -5486798 + ID4_ SINE ID 1 72 -11 3 2047 375 211 13 0 chr1 191709649 191709740 -5485692 - B4 SINE B4 -2 290 216 3 2047 458 269 176 0 chr1 191710005 191710198 -5485234 - B4 SINE B4 -64 228 2 3 2047 551 286 11 35 chr1 191711034 191711208 -5484224 + RMER30 DNA MER1_type 5 174 -28 3 2047 402 198 53 0 chr1 191712399 191712492 -5482940 + B2_Mm2 SINE B2 1 108 -108 3 2047 530 247 196 41 chr1 191712993 191713187 -5482245 - ID_B1 SINE B4 0 224 1 3 2047 206 118 0 0 chr1 191713814 191713848 -5481584 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 2047 237 211 133 92 chr1 191715574 191715694 -5479738 - L1VL2 LINE L1 -5791 544 420 3 2047 402 21 0 0 chr1 191715698 191715745 -5479687 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 2047 546 54 0 0 chr1 191715745 191715818 -5479614 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 2047 951 248 125 8 chr1 191716065 191716313 -5479119 + B4 SINE B4 2 278 -14 3 2047 432 0 0 0 chr1 191716327 191716375 -5479057 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 2047 611 224 6 0 chr1 191717002 191717181 -5478251 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 2047 392 283 143 32 chr1 191717203 191717455 -5477977 - B4 SINE B4 -12 280 1 3 2047 209 108 0 26 chr1 191717587 191717625 -5477807 + (GAA)n Simple_repeat Simple_repeat 2 38 0 3 2047 387 56 0 0 chr1 191718517 191718571 -5476861 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 2047 490 269 59 20 chr1 191718735 191718887 -5476545 + ID_B1 SINE B4 67 224 0 3 2047 243 207 0 67 chr1 191719010 191719160 -5476272 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 3 2047 443 331 43 6 chr1 191719441 191719602 -5475830 + MTE2b LTR MaLR 6 172 -207 4 2047 320 209 111 19 chr1 191719626 191719738 -5475694 + MTE2b LTR MaLR 258 372 -7 4 2047 303 238 0 140 chr1 191720057 191720106 -5475326 - B4 SINE B4 -23 269 231 4 2047 759 189 194 0 chr1 191720106 191720286 -5475146 - B3 SINE B2 0 216 2 4 2047 303 238 0 140 chr1 191720286 191720329 -5475103 - B4 SINE B4 -62 230 190 4 2047 351 0 0 0 chr1 191720628 191720667 -5474765 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 2047 294 36 73 0 chr1 191722557 191722612 -5472820 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 2047 483 220 0 0 chr1 191723883 191724056 -5471376 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 2047 945 255 9 132 chr1 191724758 191725092 -5470340 + MTD LTR MaLR 5 297 -122 4 2047 246 296 12 0 chr1 191725230 191725311 -5470121 + L2 LINE L2 2484 2565 -854 4 2047 889 213 13 58 chr1 191725372 191725596 -5469836 + B4 SINE B4 10 223 -69 4 2047 336 102 0 0 chr1 191725699 191725748 -5469684 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 2047 659 176 80 0 chr1 191726778 191726903 -5468529 + B1_Mus2 SINE Alu 8 142 -5 4 2047 635 252 31 26 chr1 191727760 191727940 -5467492 + B3 SINE B2 1 192 -1 4 2047 604 273 128 10 chr1 191727996 191728192 -5467240 - ID_B1 SINE B4 0 224 6 4 2047 755 148 25 17 chr1 191728502 191728887 -5466545 + (TCTA)n Simple_repeat Simple_repeat 1 388 0 4 2047 3330 36 8 5 chr1 191728887 191729282 -5466150 - MTA_Mm LTR MaLR 0 396 1 4 2047 417 168 38 25 chr1 191729282 191729353 -5466079 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 4 2047 432 0 0 0 chr1 191729581 191729629 -5465803 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 2047 321 26 0 0 chr1 191729705 191729743 -5465689 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 2047 288 0 0 0 chr1 191729767 191729799 -5465633 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 2047 270 0 0 0 chr1 191729867 191729897 -5465535 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 2047 234 0 0 0 chr1 191729921 191729947 -5465485 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 2047 514 150 0 16 chr1 191729971 191730093 -5465339 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 2047 180 0 0 0 chr1 191730121 191730141 -5465291 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 2047 190 203 121 108 chr1 191730186 191730269 -5465163 - L2c LINE L2 -189 3198 3115 4 2047 782 48 10 0 chr1 191730835 191730938 -5464494 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 4 2047 570 226 235 17 chr1 191732508 191732742 -5462690 + B4A SINE B4 2 286 -6 4 2047 378 0 0 0 chr1 191734436 191734478 -5460954 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 2047 616 257 109 60 chr1 191735625 191735890 -5459542 + B4A SINE B4 9 286 -6 4 2047 419 63 16 0 chr1 191735899 191735962 -5459470 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 2047 550 202 170 50 chr1 191735982 191736293 -5459139 - MTD LTR MaLR -14 405 8 4 2047 2086 144 32 38 chr1 191736522 191736891 -5458541 + ORR1B2 LTR MaLR 1 367 0 4 2047 667 244 73 0 chr1 191737092 191737256 -5458176 - ID_B1 SINE B4 -41 183 8 4 2047 243 326 100 36 chr1 191737531 191737671 -5457761 + MIRb SINE MIR 116 264 -4 4 2047 317 24 24 0 chr1 191739673 191739715 -5455717 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 2047 578 221 0 9 chr1 191739717 191739822 -5455610 - B3A SINE B2 -48 150 47 4 2047 225 235 0 0 chr1 191739835 191739886 -5455546 + C-rich Low_complexity Low_complexity 1 51 0 4 2047 268 293 37 0 chr1 191740539 191740621 -5454811 + MamSINE1 SINE tRNA 38 122 -168 4 2047 318 233 46 11 chr1 191741767 191741854 -5453578 + PB1D9 SINE Alu 31 120 0 4 2047 723 178 0 32 chr1 191742028 191742214 -5453218 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 2047 192 291 55 86 chr1 191745382 191745510 -5449922 + MIR SINE MIR 21 144 -64 4 2047 21 82 0 0 chr1 191746290 191746339 -5449093 + GC_rich Low_complexity Low_complexity 1 49 0 4 2047 1288 264 113 26 chr1 191746507 191746965 -5448467 - RMER5 LTR ERV1 -9 525 28 4 2047 483 258 23 81 chr1 191747167 191747340 -5448092 - RSINE1 SINE B4 0 165 3 4 2047 396 0 0 0 chr1 191747825 191747869 -5447563 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 2047 391 268 0 89 chr1 191747884 191748007 -5447425 - PB1D10 SINE Alu -3 114 3 4 2047 611 280 0 0 chr1 191748007 191748042 -5447390 - ID SINE ID -141 83 49 4 2047 197 250 0 0 chr1 191749175 191749215 -5446217 - L2b LINE L2 -6 3369 3330 4 2047 493 243 102 40 chr1 191749256 191749432 -5446000 + B3 SINE B2 27 213 -3 4 2047 848 255 16 16 chr1 191749768 191749939 -5445493 + B3A SINE B2 5 176 -22 4 2047 318 26 0 0 chr1 191749939 191749978 -5445454 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 2047 848 242 43 129 chr1 191749978 191750015 -5445417 + B3A SINE B2 167 195 0 4 2047 550 165 8 16 chr1 191750588 191750693 -5444739 + CT-rich Low_complexity Low_complexity 18 123 0 4 2047 1137 62 14 0 chr1 191750693 191750838 -5444594 - B1_Mus1 SINE Alu 0 148 2 4 2047 550 165 8 16 chr1 191750838 191750855 -5444577 + polypyrimidine Low_complexity Low_complexity 2 17 0 4 2047 480 193 0 0 chr1 191750859 191750978 -5444454 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 2047 679 214 18 59 chr1 191750979 191751148 -5444284 - RSINE1 SINE B4 -2 163 2 4 2047 559 181 0 12 chr1 191751385 191751633 -5443799 + GA-rich Low_complexity Low_complexity 1 245 0 4 2047 247 288 15 0 chr1 191752375 191752441 -5442991 + RSINE1 SINE B4 8 74 -91 4 2047 641 155 20 7 chr1 191752451 191752600 -5442832 + (CA)n Simple_repeat Simple_repeat 2 152 0 4 2047 204 158 0 0 chr1 191752634 191752672 -5442760 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 2047 388 190 36 23 chr1 191752675 191752992 -5442440 + (CA)n Simple_repeat Simple_repeat 1 321 0 4 2047 337 232 98 0 chr1 191753478 191753560 -5441872 + L2a LINE L2 3337 3426 0 4 2047 233 309 0 0 chr1 191754000 191754055 -5441377 - B3A SINE B2 -143 55 1 4 2047 1268 102 32 5 chr1 191754171 191754359 -5441073 - B2_Mm2 SINE B2 -1 194 2 4 2047 378 0 0 0 chr1 191754660 191754702 -5440730 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 4 2047 390 352 0 0 chr1 191754702 191754800 -5440632 - PB1D10 SINE Alu -15 102 5 4 2047 512 250 0 6 chr1 191754827 191755004 -5440428 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 2047 202 233 0 0 chr1 191755005 191755048 -5440384 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 4 2047 795 250 7 3 chr1 191755048 191755233 -5440199 - B3A SINE B2 -13 203 21 4 2047 241 342 12 101 chr1 191755082 191755251 -5440181 - RSINE1 SINE B4 0 165 12 4 2047 368 230 14 0 chr1 191755378 191755452 -5439980 - B1_Mur1 SINE Alu -8 141 67 4 2047 256 239 204 51 chr1 191755535 191755672 -5439760 + RSINE1 SINE B4 4 161 -4 4 2047 270 0 0 0 chr1 191756020 191756050 -5439382 + (T)n Simple_repeat Simple_repeat 1 30 0 4 2047 22 0 0 0 chr1 191756887 191756909 -5438523 + AT_rich Low_complexity Low_complexity 1 22 0 4 2048 227 274 0 0 chr1 191758397 191758448 -5436984 + B2_Mm2 SINE B2 4 54 -141 4 2048 454 261 47 64 chr1 191758848 191758943 -5436489 + B3 SINE B2 38 136 -80 4 2048 1097 147 147 0 chr1 191758943 191759140 -5436292 - URR1A DNA MER1_type 0 226 1 4 2048 454 261 47 64 chr1 191759140 191759216 -5436216 + B3 SINE B2 137 205 -11 4 2048 586 174 0 12 chr1 191759233 191759402 -5436030 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 2048 261 0 0 0 chr1 191759404 191759433 -5435999 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 2048 252 0 0 0 chr1 191759433 191759460 -5435972 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 2048 397 344 110 16 chr1 191759686 191759940 -5435492 - L2 LINE L2 -761 2658 2381 4 2048 248 323 62 0 chr1 191760496 191760592 -5434840 + B3A SINE B2 67 168 -30 4 2048 474 75 0 0 chr1 191760592 191760659 -5434773 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 2048 785 104 80 0 chr1 191761338 191761463 -5433969 + B2_Mm2 SINE B2 1 135 -60 4 2048 342 0 0 0 chr1 191761470 191761508 -5433924 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 2048 440 299 116 51 chr1 191761511 191761726 -5433706 + HAL1 LINE L1 856 1084 -1423 4 2048 476 281 122 68 chr1 191761729 191762011 -5433421 + B4 SINE B4 1 276 -16 4 2048 483 133 5 0 chr1 191762195 191762277 -5433155 + B3A SINE B2 14 97 -119 4 2048 594 41 0 0 chr1 191762314 191762387 -5433045 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 2048 340 292 111 6 chr1 191762688 191762850 -5432582 + HAL1 LINE L1 1509 1687 -820 4 2048 244 300 0 0 chr1 191763193 191763253 -5432179 - Kanga1 DNA Tc2 -14 1731 1672 4 2048 343 298 87 16 chr1 191763274 191763400 -5432032 - Kanga1 DNA Tc2 -1165 580 446 4 2048 258 217 224 9 chr1 191763432 191763548 -5431884 - Kanga1 DNA Tc2 -1374 371 231 4 2048 521 55 14 0 chr1 191763610 191763683 -5431749 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 2048 720 304 6 0 chr1 191763713 191763871 -5431561 - RSINE1 SINE B4 -4 161 3 4 2048 370 309 93 42 chr1 191763925 191764141 -5431291 - Kanga1 DNA Tc2 -1514 231 4 4 2048 1264 41 0 0 chr1 191764218 191764365 -5431067 + B1_Mm SINE Alu 1 147 0 4 2048 1716 26 0 0 chr1 191764371 191764562 -5430870 + B2_Mm1t SINE B2 2 192 -1 4 2048 270 0 0 0 chr1 191764579 191764609 -5430823 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 2048 1548 193 217 25 chr1 191764609 191765056 -5430376 + MT2A LTR ERVL 1 533 0 4 2048 234 174 43 0 chr1 191765056 191765102 -5430330 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 4 2048 225 237 0 0 chr1 191765129 191765188 -5430244 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 2048 325 77 31 0 chr1 191765192 191765257 -5430175 + MT2A LTR ERVL 467 533 0 4 2048 291 178 39 29 chr1 191765280 191765384 -5430048 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 4 2048 681 283 14 0 chr1 191767340 191767485 -5427947 + RSINE1 SINE B4 5 151 -14 4 2048 1410 50 0 0 chr1 191767485 191767708 -5427724 + (CA)n Simple_repeat Simple_repeat 1 223 0 4 2048 420 20 0 0 chr1 191771616 191771665 -5423767 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 2048 631 239 166 16 chr1 191771889 191772076 -5423356 + B3 SINE B2 2 216 0 4 2048 1131 68 7 0 chr1 191772139 191772285 -5423147 + B1_Mus2 SINE Alu 1 147 0 4 2048 740 40 20 0 chr1 191772318 191772417 -5423015 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 5 2048 207 0 0 0 chr1 191773361 191773384 -5422048 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 2048 1216 22 0 0 chr1 191773384 191773521 -5421911 - B1_Mm SINE Alu -9 138 2 5 2048 194 0 39 0 chr1 191773762 191773788 -5421644 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 2048 204 200 0 0 chr1 191773862 191773907 -5421525 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 2048 2328 94 0 52 chr1 191773986 191774333 -5421099 + ORR1A4 LTR MaLR 1 329 0 5 2048 280 218 35 133 chr1 191774742 191774885 -5420547 + Lx9 LINE L1 6973 7101 -543 5 2048 246 0 0 161 chr1 191774885 191775015 -5420417 + (CACCT)n Simple_repeat Simple_repeat 1 109 0 5 2048 1008 275 134 25 chr1 191775015 191775373 -5420059 + Lx9 LINE L1 7074 7470 -174 5 2048 396 0 0 0 chr1 191775373 191775417 -5420015 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 2048 300 121 66 0 chr1 191775417 191775508 -5419924 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 2048 23 33 0 0 chr1 191776145 191776175 -5419257 + AT_rich Low_complexity Low_complexity 1 30 0 5 2048 736 84 20 27 chr1 191776251 191776397 -5419035 + (TCTA)n Simple_repeat Simple_repeat 1 145 0 5 2048 239 147 88 0 chr1 191776413 191776481 -5418951 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 5 2048 212 327 0 0 chr1 191776602 191776654 -5418778 + B1F1 SINE Alu 1 52 -97 5 2048 489 174 0 0 chr1 191777193 191777291 -5418141 + GA-rich Low_complexity Low_complexity 1 98 0 5 2048 188 268 0 111 chr1 191777370 191777433 -5417999 - L3 LINE CR1 -1106 3383 3328 5 2048 216 0 0 0 chr1 191777446 191777470 -5417962 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 2048 756 228 14 56 chr1 191777756 191777970 -5417462 + B3 SINE B2 1 205 -11 5 2048 3747 74 6 0 chr1 191778021 191778510 -5416922 - L1_Mus3 LINE L1 -3 6635 6144 5 2048 1230 251 81 35 chr1 191778512 191778859 -5416573 + MTD LTR MaLR 56 418 -1 5 2048 200 122 24 0 chr1 191779381 191779422 -5416010 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 2048 712 203 7 4 chr1 191779435 191779708 -5415724 + (CA)n Simple_repeat Simple_repeat 1 273 0 5 2048 454 314 105 12 chr1 191779986 191780244 -5415188 + B4 SINE B4 2 283 -9 5 2048 263 363 34 7 chr1 191780455 191780602 -5414830 + L1MB1 LINE L1 5963 6113 -55 5 2048 528 277 28 67 chr1 191781855 191782033 -5413399 - B4A SINE B4 -117 175 5 5 2048 515 320 7 0 chr1 191782178 191782328 -5413104 - MLT1B LTR MaLR 0 390 240 5 2048 192 340 56 44 chr1 191782936 191783096 -5412336 - MIR SINE MIR -29 233 72 5 2048 327 130 0 53 chr1 191783958 191784015 -5411417 - B3A SINE B2 -144 54 1 5 2048 470 271 56 0 chr1 191784079 191784197 -5411235 - B1F SINE Alu -25 124 1 5 2048 225 322 96 34 chr1 191784197 191784310 -5411122 - RLTR25B LTR ERVK -624 404 279 5 2048 258 200 45 15 chr1 191784970 191785036 -5410396 - MIR SINE MIR -108 154 87 5 2048 998 148 6 0 chr1 191785128 191785304 -5410128 + GA-rich Low_complexity Low_complexity 3 179 0 5 2048 201 39 0 0 chr1 191785687 191785713 -5409719 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 2048 456 217 0 0 chr1 191785728 191785866 -5409566 + CT-rich Low_complexity Low_complexity 1 138 0 5 2048 470 293 23 40 chr1 191785866 191786040 -5409392 - B3A SINE B2 -22 176 6 5 2048 213 0 0 75 chr1 191786173 191786213 -5409219 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 2048 2030 204 38 0 chr1 191786213 191786580 -5408852 + MTD LTR MaLR 18 398 -21 5 2048 310 240 13 58 chr1 191788197 191788352 -5407080 + GA-rich Low_complexity Low_complexity 1 148 0 5 2048 302 294 78 0 chr1 191788355 191788457 -5406975 + RMER15 LTR ERVL 463 572 -3 5 2048 545 284 108 41 chr1 191788735 191789003 -5406429 + MLT1B LTR MaLR 5 290 -100 5 2048 385 338 120 54 chr1 191789700 191789941 -5405491 - MIR SINE MIR -1 261 5 5 2048 970 234 88 112 chr1 191790125 191790510 -5404922 + MTE2a LTR MaLR 4 379 0 5 2048 365 299 125 51 chr1 191790574 191790909 -5404523 - HAL1 LINE L1 -203 2304 1945 5 2048 251 246 70 56 chr1 191790987 191791129 -5404303 - HAL1 LINE L1 -813 1694 1551 5 2048 701 281 57 72 chr1 191791445 191791695 -5403737 + B4A SINE B4 2 253 -39 5 2048 226 296 0 18 chr1 191791685 191791720 -5403712 + RSINE1 SINE B4 112 146 -19 5 2048 225 108 0 0 chr1 191791720 191791757 -5403675 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 2048 226 296 0 18 chr1 191791757 191791776 -5403656 + RSINE1 SINE B4 147 164 -1 5 2048 296 295 126 0 chr1 191793175 191793270 -5402162 + PB1D10 SINE Alu 1 107 -10 5 2048 744 12 0 0 chr1 191793270 191793355 -5402077 + (CCAA)n Simple_repeat Simple_repeat 2 86 0 5 2048 686 270 92 57 chr1 191793364 191793592 -5401840 - B4A SINE B4 -43 249 14 5 2048 290 268 42 0 chr1 191794118 191794189 -5401243 + L2a LINE L2 3352 3425 -1 5 2048 320 292 34 148 chr1 191794842 191794895 -5400537 + B4A SINE B4 41 224 -67 5 2048 552 285 13 71 chr1 191794895 191795050 -5400382 + B1F1 SINE Alu 2 147 -2 5 2048 414 0 0 0 chr1 191795081 191795127 -5400305 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 5 2048 1607 185 122 8 chr1 191795171 191795547 -5399885 + MTD LTR MaLR 1 419 0 5 2048 1133 191 21 70 chr1 191795547 191795834 -5399598 + MTD-int LTR MaLR 1 273 -985 5 2048 686 233 73 2 chr1 191795834 191796017 -5399415 + MTD LTR MaLR 21 201 -218 5 2048 326 286 66 25 chr1 191796377 191796499 -5398933 + RLTR23 LTR ERV1 304 430 0 5 2048 620 269 126 0 chr1 191796501 191796668 -5398764 + MTD LTR MaLR 232 419 0 5 2048 421 318 80 0 chr1 191797481 191797632 -5397800 - RSINE1 SINE B4 0 165 3 5 2048 197 272 102 80 chr1 191798091 191798179 -5397253 + L2c LINE L2 3294 3383 -4 5 2048 807 184 2 11 chr1 191798391 191798541 -5396891 - B3 SINE B2 -63 153 14 5 2048 322 279 131 20 chr1 191798992 191799169 -5396263 - MIRb SINE MIR -56 212 13 5 2048 189 269 0 19 chr1 191799167 191799220 -5396212 - MER5A DNA MER1_type -40 149 98 5 2048 240 184 0 0 chr1 191800069 191800118 -5395314 + (CATG)n Simple_repeat Simple_repeat 2 50 0 5 2048 847 191 88 163 chr1 191800126 191800433 -5394999 - B4A SINE B4 0 292 9 5 2048 378 0 0 0 chr1 191801603 191801645 -5393787 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 2048 21 36 0 0 chr1 191802750 191802778 -5392654 + AT_rich Low_complexity Low_complexity 1 28 0 5 2048 390 352 14 21 chr1 191803710 191803852 -5391580 + B4A SINE B4 1 141 -151 5 2048 184 275 14 55 chr1 191803875 191803948 -5391484 - L3 LINE CR1 -2460 2029 1960 5 2048 736 235 137 89 chr1 191804805 191805141 -5390291 - ORR1E LTR MaLR 0 359 8 5 2048 185 0 0 39 chr1 191805543 191805569 -5389863 + (CACAC)n Simple_repeat Simple_repeat 1 25 0 5 2048 438 365 144 12 chr1 191805767 191806086 -5389346 + MER121 Unknown Unknown 12 372 -40 5 2048 1131 276 7 29 chr1 191806185 191806457 -5388975 + B4 SINE B4 25 290 -2 5 2048 204 121 0 29 chr1 191806529 191806563 -5388869 + GA-rich Low_complexity Low_complexity 1 33 0 5 2048 692 292 94 61 chr1 191806731 191807059 -5388373 + ORR1E LTR MaLR 1 339 -20 5 2048 390 21 0 0 chr1 191807059 191807106 -5388326 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 2048 1393 161 0 18 chr1 191807457 191807685 -5387747 - URR1B DNA MER1_type -1 224 1 5 2048 869 143 21 14 chr1 191807807 191808098 -5387334 + (TCTA)n Simple_repeat Simple_repeat 1 293 0 5 2048 312 171 0 0 chr1 191808075 191808128 -5387304 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 2048 387 0 0 0 chr1 191808128 191808171 -5387261 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 2048 312 171 0 0 chr1 191808171 191808187 -5387245 + (TA)n Simple_repeat Simple_repeat 2 17 0 5 2048 568 248 0 141 chr1 191808187 191808379 -5387053 + MTEb LTR MaLR 162 326 -53 5 2048 450 53 0 0 chr1 191808379 191808436 -5386996 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 2048 315 0 0 0 chr1 191808438 191808473 -5386959 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 5 2048 851 128 7 0 chr1 191808475 191808616 -5386816 + (TTC)n Simple_repeat Simple_repeat 3 144 0 5 2048 534 70 0 0 chr1 191808605 191808676 -5386756 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 2048 601 300 23 23 chr1 191809326 191809338 -5386094 - B3 SINE B2 -42 174 163 5 2048 372 77 0 0 chr1 191809338 191809390 -5386042 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 2048 692 264 25 1 chr1 191809390 191809551 -5385881 - B3A SINE B2 -54 162 1 5 2048 647 285 73 51 chr1 191809989 191810263 -5385169 + B4A SINE B4 3 282 -10 5 2048 815 241 104 79 chr1 191810808 191811087 -5384345 + B4 SINE B4 3 288 -4 5 2048 240 86 0 0 chr1 191811442 191811477 -5383955 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 5 2048 435 19 0 0 chr1 191811835 191811887 -5383545 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 2048 281 277 125 34 chr1 191812228 191812465 -5382967 + LTR16A LTR ERVL 131 391 -65 5 2048 420 258 78 8 chr1 191812941 191813070 -5382362 + B1F1 SINE Alu 11 148 -1 5 2048 1207 224 85 23 chr1 191815359 191815460 -5379972 - MTE2a LTR MaLR -44 335 235 5 2048 447 19 0 0 chr1 191815460 191815512 -5379920 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 2048 1207 224 85 23 chr1 191815512 191815716 -5379716 - MTE2a LTR MaLR -145 234 12 5 2048 404 314 37 12 chr1 191816048 191816209 -5379223 + RSINE1 SINE B4 1 165 0 5 2048 350 167 0 77 chr1 191816240 191816305 -5379127 + HAL1-3A_ME LINE L1 1976 2035 -823 5 2048 547 208 147 31 chr1 191816774 191816903 -5378529 - B1_Mur2 SINE Alu -2 147 4 5 2048 263 93 23 0 chr1 191817081 191817124 -5378308 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 5 2048 375 301 73 92 chr1 191818489 191818691 -5376741 - MLT2B3 LTR ERVL 0 670 431 5 2048 319 256 25 37 chr1 191818691 191818772 -5376660 + B1_Mur3 SINE Alu 1 80 -69 5 2048 375 301 73 92 chr1 191818772 191818805 -5376627 - MLT2B3 LTR ERVL 0 430 390 5 2048 827 285 80 29 chr1 191818878 191818924 -5376508 - B4A SINE B4 -1 291 250 5 2048 432 97 0 0 chr1 191818924 191818986 -5376446 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 2048 919 253 84 9 chr1 191818986 191819214 -5376218 - B4 SINE B4 -43 249 3 5 2048 225 0 0 0 chr1 191820276 191820301 -5375131 + (TGG)n Simple_repeat Simple_repeat 3 27 0 6 2048 424 270 40 0 chr1 191820302 191820402 -5375030 - B3A SINE B2 -39 159 56 6 2048 1752 135 50 66 chr1 191820926 191821243 -5374189 - ORR1A4 LTR MaLR 0 329 18 6 2048 456 227 147 39 chr1 191821281 191821371 -5374061 - B3 SINE B2 0 216 130 6 2048 549 0 0 0 chr1 191821371 191821432 -5374000 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 2048 456 227 147 39 chr1 191821432 191821497 -5373935 - B3 SINE B2 -87 129 44 6 2048 287 315 187 50 chr1 191821514 191821835 -5373597 + MLT1J2-int LTR MaLR 931 1295 -92 6 2048 894 257 133 43 chr1 191821835 191821890 -5373542 + MTE2a LTR MaLR 1 60 -319 6 2048 867 201 248 39 chr1 191821890 191822196 -5373236 + ORR1D2 LTR MaLR 1 370 0 6 2048 894 257 133 43 chr1 191822196 191822486 -5372946 + MTE2a LTR MaLR 61 377 -2 6 2048 587 60 12 0 chr1 191822550 191822634 -5372798 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 2048 230 192 99 37 chr1 191822917 191822998 -5372434 + MLT1J2 LTR MaLR 363 448 0 6 2048 1705 318 80 31 chr1 191822998 191823861 -5371571 + Zaphod DNA Tip100 2154 3062 -969 6 2048 1070 99 7 0 chr1 191823861 191824003 -5371429 + B1_Mus2 SINE Alu 5 147 0 6 2048 1705 318 80 31 chr1 191824003 191824021 -5371411 + Zaphod DNA Tip100 3063 3080 -951 6 2048 595 279 71 0 chr1 191824048 191824202 -5371230 + B3 SINE B2 1 165 -51 6 2048 180 0 0 0 chr1 191824202 191824222 -5371210 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 2048 627 57 0 0 chr1 191824222 191824310 -5371122 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 2048 385 267 78 71 chr1 191824831 191824971 -5370461 + Zaphod DNA Tip100 3433 3573 -458 6 2048 511 292 20 20 chr1 191824971 191825118 -5370314 + B1F1 SINE Alu 1 147 -2 6 2048 300 262 0 0 chr1 191825122 191825183 -5370249 + ID4_ SINE ID 2 62 -21 6 2048 553 292 122 91 chr1 191825549 191825835 -5369597 - MTEa LTR MaLR -2 377 83 6 2048 1333 202 165 31 chr1 191825836 191825900 -5369532 - RLTR20C LTR ERVK 0 541 441 6 2048 504 0 0 0 chr1 191825900 191825956 -5369476 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 2048 1466 178 37 26 chr1 191825956 191826279 -5369153 - RLTR20C LTR ERVK -101 440 103 6 2048 225 348 11 22 chr1 191826274 191826365 -5369067 - MLT2B3 LTR ERVL -463 91 2 6 2048 232 256 132 12 chr1 191826429 191826512 -5368920 - Tigger12A DNA MER2_type -95 696 604 6 2048 7010 42 8 9 chr1 191826521 191827378 -5368054 - L1Md_F2 LINE L1 0 6582 5727 6 2048 4191 42 0 23 chr1 191827382 191827897 -5367535 + L1Md_F2 LINE L1 5225 5727 -156 6 2048 875 237 23 32 chr1 191827897 191828115 -5367317 - B3 SINE B2 0 216 1 6 2048 905 143 27 7 chr1 191828136 191828284 -5367148 - B3 SINE B2 -63 153 3 6 2048 230 348 85 58 chr1 191828852 191829041 -5366391 - ORR1E LTR MaLR -129 230 37 6 2048 254 222 19 0 chr1 191829074 191829128 -5366304 + B3A SINE B2 1 55 -143 6 2048 413 272 114 0 chr1 191829419 191829533 -5365899 + B3 SINE B2 35 161 -55 6 2048 207 100 0 0 chr1 191829537 191829567 -5365865 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 2048 1027 276 109 55 chr1 191829616 191830103 -5365329 + MT2A LTR ERVL 2 514 -19 6 2048 215 135 73 0 chr1 191830103 191830199 -5365233 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 2048 214 182 23 0 chr1 191832875 191832919 -5362513 - MIR3 SINE MIR -26 182 138 6 2048 770 271 69 145 chr1 191833363 191833798 -5361634 + MTD LTR MaLR 18 419 0 6 2048 947 215 69 91 chr1 191836223 191836518 -5358914 - MTE2b LTR MaLR -88 291 7 6 2048 6158 72 5 6 chr1 191837399 191838208 -5357224 - RLTR13C2 LTR ERVK 0 808 1 6 2048 227 264 0 0 chr1 191838805 191838877 -5356555 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 6 2048 274 269 99 23 chr1 191839009 191839110 -5356322 + MTD LTR MaLR 9 117 -302 6 2048 714 264 78 86 chr1 191839140 191839409 -5356023 - B4A SINE B4 -20 272 6 6 2048 722 233 318 44 chr1 191839844 191840140 -5355292 - MTEb LTR MaLR -2 377 1 6 2048 439 151 0 148 chr1 191840178 191840195 -5355237 + MT2B LTR ERVL 172 183 -418 6 2048 258 32 0 0 chr1 191840195 191840226 -5355206 + (GAA)n Simple_repeat Simple_repeat 1 31 0 6 2048 439 151 0 148 chr1 191840226 191840309 -5355123 + MT2B LTR ERVL 184 257 -344 6 2048 1039 31 0 0 chr1 191840227 191840354 -5355078 + B1_Mm SINE Alu 21 147 0 6 2048 1362 62 0 0 chr1 191840354 191840531 -5354901 + (GAA)n Simple_repeat Simple_repeat 2 178 0 6 2048 680 64 11 0 chr1 191841258 191841352 -5354080 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 6 2048 223 293 0 0 chr1 191843963 191844021 -5351411 + CT-rich Low_complexity Low_complexity 1 58 0 6 2048 242 250 224 26 chr1 191844508 191844664 -5350768 - MIRb SINE MIR -8 260 74 6 2048 21 0 0 0 chr1 191844837 191844858 -5350574 + AT_rich Low_complexity Low_complexity 1 21 0 6 2048 462 18 0 0 chr1 191845032 191845087 -5350345 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 2048 775 261 20 0 chr1 191845096 191845249 -5350183 - B3A SINE B2 -42 156 1 6 2048 1327 88 22 0 chr1 191845483 191845664 -5349768 - B2_Mm2 SINE B2 -10 185 1 6 2048 289 241 108 0 chr1 191846411 191846494 -5348938 - B3 SINE B2 -3 213 122 6 2048 8028 63 11 5 chr1 191846496 191847622 -5347810 + L1_Mus3 LINE L1 5469 6602 -36 6 2048 740 232 14 12 chr1 191847622 191847784 -5347648 - B3 SINE B2 -35 158 1 6 2048 513 0 0 0 chr1 191848467 191848524 -5346908 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 2048 990 269 28 52 chr1 191849170 191849460 -5345972 - B4A SINE B4 0 292 10 6 2048 494 248 116 14 chr1 191849909 191850056 -5345376 - U1 snRNA snRNA -1 164 3 6 2048 225 0 0 0 chr1 191850056 191850081 -5345351 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 2048 540 291 38 32 chr1 191850278 191850463 -5344969 + B4A SINE B4 106 291 -1 6 2048 190 81 26 26 chr1 191850467 191850505 -5344927 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 2048 262 208 19 32 chr1 191850594 191850748 -5344684 + (CATA)n Simple_repeat Simple_repeat 1 152 0 6 2048 375 82 0 0 chr1 191850771 191850820 -5344612 + HAL1-3A_ME LINE L1 1975 2023 -835 6 2048 213 121 16 65 chr1 191850886 191850948 -5344484 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 6 2048 555 179 0 0 chr1 191853342 191853448 -5341984 + CT-rich Low_complexity Low_complexity 1 106 0 6 2048 310 0 0 0 chr1 191853677 191853712 -5341720 - U2 snRNA snRNA -153 35 1 6 2048 1375 88 22 5 chr1 191853722 191853906 -5341526 - B2_Mm2 SINE B2 -8 187 1 6 2048 199 302 157 32 chr1 191854326 191854511 -5340921 - L2c LINE L2 -261 3126 2919 6 2048 586 262 50 86 chr1 191854697 191854998 -5340434 + B4A SINE B4 3 292 0 6 2048 483 18 0 0 chr1 191855675 191855731 -5339701 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 2048 324 209 151 0 chr1 191856090 191856176 -5339256 - Tigger7 DNA MER2_type -90 2401 2303 6 2048 516 319 60 97 chr1 191856339 191856552 -5338880 - Tigger7 DNA MER2_type -2228 263 55 6 2048 437 272 207 118 chr1 191856552 191856881 -5338551 - ORR1E LTR MaLR -1 358 1 6 2048 516 319 60 97 chr1 191856881 191856934 -5338498 - Tigger7 DNA MER2_type -2437 54 7 6 2048 233 279 45 23 chr1 191857284 191857372 -5338060 - MTD LTR MaLR -322 97 8 6 2048 369 75 0 0 chr1 191857570 191857623 -5337809 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 6 2048 234 264 0 52 chr1 191858829 191858925 -5336507 + C-rich Low_complexity Low_complexity 3 93 0 6 2048 486 269 0 0 chr1 191858988 191859092 -5336340 - PB1D7 SINE Alu -16 104 1 6 2048 968 268 82 17 chr1 191859657 191859949 -5335483 - MTEa LTR MaLR -60 319 9 6 2048 369 319 12 63 chr1 191860341 191860590 -5334842 + LTR85a LTR Gypsy? 545 781 -3 6 2048 881 136 0 66 chr1 191862286 191862382 -5333050 + URR1A DNA MER1_type 72 157 -69 6 2048 189 74 0 0 chr1 191862382 191862409 -5333023 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 2048 881 136 0 66 chr1 191862409 191862478 -5332954 + URR1A DNA MER1_type 158 226 0 6 2048 885 175 0 0 chr1 191863014 191863180 -5332252 + CT-rich Low_complexity Low_complexity 3 168 0 6 2048 458 331 114 37 chr1 191863332 191863708 -5331724 - MLT1G3 LTR MaLR -28 567 163 6 2048 393 198 0 0 chr1 191863996 191864087 -5331345 + (CACCAT)n Simple_repeat Simple_repeat 3 93 0 6 2048 578 309 67 0 chr1 191864485 191864679 -5330753 - ID_B1 SINE B4 -13 211 5 6 2048 333 0 0 0 chr1 191864811 191864848 -5330584 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 2048 459 0 0 0 chr1 191864849 191864900 -5330532 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 2048 845 326 57 7 chr1 191865115 191865396 -5330036 + Tigger7 DNA MER2_type 9 303 -2188 6 2048 906 36 0 0 chr1 191865475 191865585 -5329847 + (GGA)n Simple_repeat Simple_repeat 3 112 0 6 2048 1625 37 5 0 chr1 191865659 191865850 -5329582 + B2_Mm1a SINE B2 2 193 0 6 2048 645 231 128 23 chr1 191866687 191866944 -5328488 - B4A SINE B4 -6 286 3 6 2048 330 359 35 17 chr1 191867104 191867277 -5328155 - MIR SINE MIR -73 189 14 6 2048 189 195 0 0 chr1 191868275 191868316 -5327116 + T-rich Low_complexity Low_complexity 1 41 0 6 2048 1191 59 6 12 chr1 191868403 191868574 -5326858 + (TCTCC)n Simple_repeat Simple_repeat 2 171 0 6 2048 207 146 0 0 chr1 191870099 191870140 -5325292 + (T)n Simple_repeat Simple_repeat 1 41 0 6 2048 203 342 0 0 chr1 191870712 191870791 -5324641 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 2048 956 264 96 22 chr1 191870794 191871065 -5324367 - B4A SINE B4 0 292 2 6 2048 655 243 44 71 chr1 191871987 191872213 -5323219 + B4 SINE B4 1 220 -72 6 2048 233 29 0 29 chr1 191872228 191872263 -5323169 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 2048 252 333 19 10 chr1 191873042 191873145 -5322287 - MIR SINE MIR -114 148 45 6 2048 767 222 62 11 chr1 191873189 191873367 -5322065 + ORR1E LTR MaLR 1 187 -172 6 2048 713 314 97 0 chr1 191873594 191873801 -5321631 + B4A SINE B4 4 230 -62 6 2048 372 280 14 82 chr1 191874126 191874341 -5321091 + RMER15 LTR ERVL 66 385 -190 6 2048 270 294 28 64 chr1 191874452 191874561 -5320871 - MLT1A1 LTR MaLR -4 404 300 6 2048 671 333 69 39 chr1 191874854 191875452 -5319980 + L2a LINE L2 2778 3421 -5 6 2048 243 0 0 0 chr1 191875772 191875799 -5319633 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 7 2048 492 18 0 0 chr1 191876411 191876468 -5318964 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 2048 299 356 173 34 chr1 191877185 191877440 -5317992 + L2 LINE L2 2400 2674 -745 7 2048 1847 155 71 6 chr1 191877440 191877777 -5317655 + RLTR15 LTR ERVK 1 359 0 7 2048 299 356 173 34 chr1 191877777 191878117 -5317315 + L2 LINE L2 2675 3078 -341 7 2048 378 188 12 24 chr1 191878135 191878217 -5317215 + ID4_ SINE ID 1 81 -2 7 2048 558 301 12 56 chr1 191878670 191878832 -5316600 + B4A SINE B4 2 156 -136 7 2048 644 99 9 0 chr1 191878905 191879016 -5316416 + (TC)n Simple_repeat Simple_repeat 2 113 0 7 2048 333 0 0 0 chr1 191879016 191879053 -5316379 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 2048 410 222 274 0 chr1 191879094 191879211 -5316221 - B1_Mur2 SINE Alu 0 149 1 7 2048 674 235 141 10 chr1 191880159 191880357 -5315075 + ID_B1 SINE B4 1 224 0 7 2048 259 203 28 42 chr1 191880390 191880462 -5314970 - MER33 DNA MER1_type -57 267 197 7 2048 488 218 6 17 chr1 191882015 191882192 -5313240 + (TG)n Simple_repeat Simple_repeat 1 175 0 7 2048 304 26 0 26 chr1 191882206 191882245 -5313187 - HAL1-3A_ME LINE L1 -846 2012 1975 7 2048 443 206 0 25 chr1 191882252 191882411 -5313021 + (TG)n Simple_repeat Simple_repeat 1 155 0 7 2048 675 141 0 63 chr1 191882430 191882620 -5312812 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 2048 533 184 0 24 chr1 191882631 191882798 -5312634 + (TG)n Simple_repeat Simple_repeat 1 163 0 7 2048 796 235 14 101 chr1 191882812 191883030 -5312402 - B4 SINE B4 0 292 94 7 2048 243 337 121 23 chr1 191883353 191883526 -5311906 + MER63A DNA AcHobo 14 203 -7 7 2048 198 136 0 0 chr1 191883611 191883655 -5311777 + (A)n Simple_repeat Simple_repeat 1 44 0 7 2048 806 321 5 40 chr1 191883748 191883972 -5311460 + B4A SINE B4 71 286 -6 7 2048 707 180 7 0 chr1 191883978 191884128 -5311304 + (CA)n Simple_repeat Simple_repeat 1 151 0 7 2048 411 304 188 27 chr1 191884236 191884459 -5310973 - RMER15 LTR ERVL -5 570 312 7 2048 412 275 106 21 chr1 191884874 191885015 -5310417 + MLT1A1 LTR MaLR 256 408 0 7 2048 341 331 12 23 chr1 191886589 191886762 -5308670 + (TATG)n Simple_repeat Simple_repeat 1 171 0 7 2048 396 192 0 0 chr1 191887409 191887513 -5307919 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 2048 630 225 0 0 chr1 191887534 191887712 -5307720 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 2048 236 270 95 0 chr1 191888207 191888270 -5307162 - RMER30 DNA MER1_type -132 70 2 7 2048 271 236 27 14 chr1 191888487 191888560 -5306872 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 2048 437 283 213 8 chr1 191888576 191888815 -5306617 - B4A SINE B4 -4 288 1 7 2049 236 209 28 69 chr1 191889549 191889621 -5305811 + MLT1G3 LTR MaLR 224 292 -303 7 2049 387 295 118 24 chr1 191890589 191890759 -5304673 - MIRc SINE MIR -31 237 52 7 2049 271 332 223 38 chr1 191891076 191892036 -5303396 + L2 LINE L2 1098 2235 -1184 7 2049 385 258 57 16 chr1 191892191 191892313 -5303119 + RMER15 LTR ERVL 324 450 -125 7 2049 439 269 0 15 chr1 191893932 191894209 -5301223 + (TG)n Simple_repeat Simple_repeat 1 272 0 7 2049 225 301 114 29 chr1 191894216 191894356 -5301076 + RLTR22_Mur LTR ERVK 1314 1465 -383 7 2049 197 197 0 14 chr1 191894416 191894488 -5300944 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 2049 738 279 80 13 chr1 191894748 191894973 -5300459 - MLT1A1 LTR MaLR -1 407 168 7 2049 183 259 18 36 chr1 191895189 191895245 -5300187 - L2c LINE L2 -17 3370 3316 7 2049 297 0 0 0 chr1 191895462 191895495 -5299937 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 2049 340 309 10 41 chr1 191895516 191895614 -5299818 - RSINE1 SINE B4 -25 140 46 7 2049 256 345 70 35 chr1 191895620 191895791 -5299641 + L3 LINE CR1 3994 4170 -319 7 2049 774 281 91 38 chr1 191895828 191896146 -5299286 + ORR1E LTR MaLR 25 359 0 7 2049 393 188 0 0 chr1 191896513 191896593 -5298839 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 2049 237 293 43 57 chr1 191896809 191896950 -5298482 + RLTR22_Mur LTR ERVK 1225 1363 -485 7 2049 821 246 50 70 chr1 191896982 191897240 -5298192 - B4A SINE B4 -12 280 28 7 2049 732 238 24 63 chr1 191897680 191897886 -5297546 - B3A SINE B2 0 198 1 7 2049 970 152 206 0 chr1 191898267 191898451 -5296981 + URR1A DNA MER1_type 2 223 -3 7 2049 598 315 34 19 chr1 191898826 191899033 -5296399 - B4A SINE B4 -82 210 1 7 2049 625 358 143 3 chr1 191899313 191899669 -5295763 + LTR16B LTR ERVL 58 463 0 7 2049 1261 34 0 7 chr1 191899695 191899842 -5295590 + B1_Mus1 SINE Alu 3 148 0 7 2049 597 28 0 0 chr1 191899849 191899920 -5295512 + (GA)n Simple_repeat Simple_repeat 1 71 0 7 2049 422 252 40 33 chr1 191900362 191900514 -5294918 + L1M5 LINE L1 5433 5585 -539 7 2049 180 0 0 0 chr1 191901023 191901043 -5294389 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 2049 323 244 40 45 chr1 191901137 191901239 -5294193 + (TATG)n Simple_repeat Simple_repeat 1 102 0 7 2049 3167 62 71 7 chr1 191901239 191901661 -5293771 + RLTR44B LTR ERVK 1 449 0 7 2049 323 244 40 45 chr1 191901661 191901734 -5293698 + (TATG)n Simple_repeat Simple_repeat 4 76 0 7 2049 268 315 0 42 chr1 191901736 191901832 -5293600 - B3 SINE B2 -13 203 112 7 2049 779 292 120 23 chr1 191901777 191902043 -5293389 - B4A SINE B4 0 292 1 7 2049 326 323 88 34 chr1 191902124 191902387 -5293045 - L1MC4 LINE L1 -208 7834 7558 7 2049 450 269 87 0 chr1 191902397 191902546 -5292886 - RSINE1 SINE B4 -2 163 2 7 2049 195 42 0 0 chr1 191903795 191903819 -5291613 + (C)n Simple_repeat Simple_repeat 1 24 0 7 2049 205 205 0 0 chr1 191904069 191904108 -5291324 + T-rich Low_complexity Low_complexity 1 39 0 7 2049 1037 264 55 7 chr1 191905533 191905808 -5289624 + B4 SINE B4 5 292 0 7 2049 417 20 0 0 chr1 191906532 191906582 -5288850 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 2049 863 161 0 6 chr1 191906617 191906798 -5288634 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 2049 1080 214 211 13 chr1 191906900 191907213 -5288219 + MTEb LTR MaLR 3 377 -2 7 2049 313 100 28 28 chr1 191907728 191907800 -5287632 + (CAGAGA)n Simple_repeat Simple_repeat 1 72 0 7 2049 575 206 0 6 chr1 191907808 191907989 -5287443 + GA-rich Low_complexity Low_complexity 1 180 0 7 2049 211 279 33 65 chr1 191909787 191909879 -5285553 + AmnSINE1 SINE SINE 25 113 -462 7 2049 181 274 59 0 chr1 191909915 191909966 -5285466 - L2 LINE L2 -1884 1535 1482 7 2049 618 306 55 61 chr1 191910255 191910406 -5285026 + B4 SINE B4 1 186 -106 7 2049 776 189 0 0 chr1 191910406 191910528 -5284904 + B1_Mur1 SINE Alu 1 122 -27 7 2049 618 306 55 61 chr1 191910528 191910612 -5284820 + B4 SINE B4 187 292 0 7 2049 707 153 8 0 chr1 191912739 191912870 -5282562 + CT-rich Low_complexity Low_complexity 2 133 0 7 2049 321 333 31 23 chr1 191913546 191913675 -5281757 + B4 SINE B4 33 162 -130 7 2049 1782 213 61 32 chr1 191913675 191914082 -5281350 + MTD LTR MaLR 1 419 0 7 2049 408 254 88 35 chr1 191914082 191914194 -5281238 + B4 SINE B4 158 275 -17 7 2049 750 130 0 0 chr1 191914199 191914330 -5281102 + (CA)n Simple_repeat Simple_repeat 1 131 0 7 2049 225 0 0 0 chr1 191915205 191915230 -5280202 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 2049 230 279 103 0 chr1 191916548 191916616 -5278816 - ID4 SINE ID 0 83 9 7 2049 350 243 0 0 chr1 191917103 191917177 -5278255 - B3 SINE B2 -141 75 2 7 2049 296 135 0 13 chr1 191917716 191917791 -5277641 + (CAAAA)n Simple_repeat Simple_repeat 5 78 0 7 2049 968 245 15 0 chr1 191917987 191918187 -5277245 - ID_B1 SINE B4 -14 210 8 7 2049 234 0 0 0 chr1 191918722 191918748 -5276684 + (T)n Simple_repeat Simple_repeat 1 26 0 7 2049 1230 61 0 0 chr1 191918748 191918895 -5276537 - B1_Mus1 SINE Alu 0 148 2 7 2049 865 232 24 19 chr1 191918937 191919144 -5276288 - B3 SINE B2 -6 210 3 7 2049 25 0 0 0 chr1 191919333 191919358 -5276074 + AT_rich Low_complexity Low_complexity 1 25 0 7 2049 300 211 79 0 chr1 191919589 191919665 -5275767 + RSINE1 SINE B4 18 99 -66 7 2049 23 0 0 0 chr1 191919688 191919711 -5275721 + AT_rich Low_complexity Low_complexity 1 23 0 7 2049 543 274 22 0 chr1 191919732 191919867 -5275565 - RSINE1 SINE B4 -3 162 25 7 2049 254 271 111 30 chr1 191919902 191920001 -5275431 - MTE2b LTR MaLR 0 379 273 7 2049 250 346 86 38 chr1 191920042 191920228 -5275204 - MTE2b LTR MaLR -163 196 2 7 2049 520 338 111 47 chr1 191920229 191920723 -5274709 - L2 LINE L2 -617 2802 2277 7 2049 507 235 59 0 chr1 191921240 191921359 -5274073 - B1F SINE Alu 0 149 24 7 2049 1293 153 18 5 chr1 191921390 191921613 -5273819 - URR1A DNA MER1_type 0 226 1 7 2049 225 217 48 48 chr1 191921644 191921707 -5273725 - L1_Mur2 LINE L1 -3566 2311 2249 7 2049 225 0 0 0 chr1 191922089 191922114 -5273318 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 2049 234 0 0 0 chr1 191923472 191923498 -5271934 + (CAT)n Simple_repeat Simple_repeat 1 26 0 7 2049 245 311 22 13 chr1 191924719 191924829 -5270603 - Kanga1c DNA Tc2 -3 726 616 7 2049 1065 67 30 0 chr1 191925174 191925309 -5270123 + B1_Mm SINE Alu 1 139 -8 7 2049 279 71 0 0 chr1 191925309 191925351 -5270081 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 7 2049 1149 84 0 0 chr1 191925351 191925517 -5269915 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 7 2049 1151 95 0 0 chr1 191925541 191925689 -5269743 + B1_Mus1 SINE Alu 1 148 0 7 2049 356 0 23 0 chr1 191925692 191925736 -5269696 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 2049 270 321 69 11 chr1 191925756 191925945 -5269487 - L1M5 LINE L1 -598 5526 5327 7 2049 2213 125 92 24 chr1 191926080 191926399 -5269033 + ORR1B1 LTR MaLR 1 351 -43 7 2049 1344 78 33 0 chr1 191926399 191926579 -5268853 + B2_Mm1a SINE B2 1 186 -7 8 2049 2213 125 92 24 chr1 191926579 191926628 -5268804 + ORR1B1 LTR MaLR 352 394 0 7 2049 315 0 0 0 chr1 191926643 191926678 -5268754 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 2049 943 250 87 141 chr1 191926683 191927074 -5268358 + MTEa LTR MaLR 3 372 -7 8 2049 303 28 0 0 chr1 191927175 191927211 -5268221 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 2049 261 262 46 38 chr1 191927823 191927954 -5267478 - L1MC LINE L1 -1448 4698 4567 8 2049 208 323 48 48 chr1 191928036 191928202 -5267230 + MIR SINE MIR 97 262 0 8 2049 1461 227 74 25 chr1 191928644 191928997 -5266435 + ORR1D2 LTR MaLR 1 370 0 8 2049 468 0 0 0 chr1 191929246 191929298 -5266134 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 8 2049 1021 72 0 42 chr1 191929298 191929432 -5266000 - B2_Mm2 SINE B2 -62 133 2 8 2049 804 146 18 0 chr1 191929619 191929783 -5265649 + CT-rich Low_complexity Low_complexity 1 167 0 8 2049 304 354 26 26 chr1 191930040 191930191 -5265241 - MIRb SINE MIR -39 229 79 8 2049 683 177 0 6 chr1 191931398 191931563 -5263869 + (TA)n Simple_repeat Simple_repeat 2 165 0 8 2049 281 289 26 0 chr1 191931564 191931640 -5263792 - ID4 SINE ID 0 83 6 8 2049 496 239 0 22 chr1 191931820 191932000 -5263432 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 8 2049 253 332 79 35 chr1 191932048 191932276 -5263156 + RMER12 LTR ERVK 734 971 -351 8 2049 507 326 93 11 chr1 191933125 191933308 -5262124 + B4 SINE B4 81 278 -14 8 2049 261 0 0 0 chr1 191933336 191933365 -5262067 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 2049 396 0 0 0 chr1 191933365 191933408 -5262024 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 2049 3799 125 147 21 chr1 191933824 191934479 -5260953 + RMER19A LTR ERVK 1 737 0 8 2049 384 297 0 10 chr1 191934541 191934643 -5260789 + PB1D10 SINE Alu 6 106 -11 8 2049 363 314 0 46 chr1 191934684 191934814 -5260618 + RSINE1 SINE B4 6 129 -36 8 2049 506 114 11 0 chr1 191934818 191934906 -5260526 + (CA)n Simple_repeat Simple_repeat 1 89 0 8 2049 547 290 14 48 chr1 191934934 191935079 -5260353 + ID_B1 SINE B4 82 221 -3 8 2049 378 333 27 0 chr1 191935338 191935449 -5259983 - PB1D10 SINE Alu 0 117 4 8 2049 351 0 0 0 chr1 191936212 191936251 -5259181 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 2049 804 143 13 7 chr1 191936431 191936586 -5258846 + CT-rich Low_complexity Low_complexity 2 157 0 8 2049 428 0 19 0 chr1 191936588 191936640 -5258792 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 2049 510 346 0 0 chr1 191937611 191937767 -5257665 - RSINE1 SINE B4 -4 161 6 8 2049 374 229 25 32 chr1 191938018 191938126 -5257306 + B4 SINE B4 1 103 -62 8 2049 404 225 24 112 chr1 191939087 191939212 -5256220 + PB1D7 SINE Alu 7 120 0 8 2049 231 148 238 32 chr1 191939614 191939677 -5255755 - Charlie12 DNA MER1_type -2714 159 84 8 2049 828 197 71 50 chr1 191939982 191940180 -5255252 - B3 SINE B2 0 216 15 8 2049 180 0 0 0 chr1 191941419 191941439 -5253993 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 2049 21 0 0 0 chr1 191943626 191943647 -5251785 + AT_rich Low_complexity Low_complexity 1 21 0 8 2049 350 331 59 53 chr1 191947946 191948115 -5247317 - MIRb SINE MIR -6 262 93 8 2049 201 39 0 0 chr1 191948204 191948230 -5247202 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 8 2049 278 164 45 76 chr1 191948848 191948914 -5246518 + B1F1 SINE Alu 78 141 -8 8 2049 227 200 0 57 chr1 191948868 191948921 -5246511 + ID_B1 SINE B4 174 223 -1 8 2049 246 258 136 0 chr1 191949967 191950033 -5245399 + ID4_ SINE ID 2 76 -7 8 2049 1086 140 0 0 chr1 191950248 191950427 -5245005 + (TC)n Simple_repeat Simple_repeat 2 180 0 8 2049 475 204 0 37 chr1 191950442 191950549 -5244883 - ID_B1 SINE B4 -7 217 115 8 2049 423 0 0 0 chr1 191951695 191951742 -5243690 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 2049 253 247 14 0 chr1 191953169 191953242 -5242190 + (TA)n Simple_repeat Simple_repeat 1 74 0 8 2049 410 167 9 0 chr1 191954265 191954373 -5241059 + (TG)n Simple_repeat Simple_repeat 2 110 0 8 2049 288 0 0 0 chr1 191955171 191955203 -5240229 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 2049 378 317 10 0 chr1 191956778 191956882 -5238550 - MER58B DNA MER1_type -236 105 1 8 2049 315 19 38 19 chr1 191957611 191957664 -5237768 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 8 2049 582 328 39 51 chr1 191957753 191958010 -5237422 + MER2 DNA MER2_type 32 285 -60 8 2049 348 88 0 0 chr1 191959073 191959130 -5236302 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 8 2049 267 54 0 0 chr1 191959131 191959168 -5236264 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 2049 21 36 0 0 chr1 191959321 191959349 -5236083 + GC_rich Low_complexity Low_complexity 1 28 0 8 2049 223 294 38 20 chr1 191959544 191959672 -5235760 - MIR SINE MIR -82 186 61 8 2049 254 234 64 13 chr1 191960069 191960147 -5235285 + ID2 SINE ID 1 82 -1 8 2049 264 327 20 10 chr1 191960407 191960509 -5234923 + CR1_Mam LINE CR1 2016 2118 -86 8 2049 478 289 10 0 chr1 191967102 191967206 -5228226 - B4A SINE B4 -5 287 183 8 2049 421 244 1 3 chr1 191967240 191967328 -5228104 - B4A SINE B4 -69 96 9 8 2049 549 234 0 6 chr1 191967846 191968209 -5227223 + (TG)n Simple_repeat Simple_repeat 1 360 0 8 2049 215 294 112 60 chr1 191968355 191968471 -5226961 - MIRb SINE MIR -122 146 18 8 2049 602 204 37 0 chr1 191969009 191969117 -5226315 + RSINE1 SINE B4 2 113 -52 8 2049 759 22 0 0 chr1 191969117 191969206 -5226226 + (TC)n Simple_repeat Simple_repeat 1 89 0 8 2049 509 281 0 9 chr1 191970075 191970190 -5225242 + RSINE1 SINE B4 11 124 -41 8 2049 786 149 0 0 chr1 191970653 191970787 -5224645 + (GA)n Simple_repeat Simple_repeat 2 135 0 8 2049 334 104 0 15 chr1 191971122 191971190 -5224242 - L1Md_F3 LINE L1 -2 6582 6516 8 2049 318 235 91 10 chr1 191974694 191974793 -5220639 + AmnSINE1 SINE SINE 453 559 -16 8 2049 348 24 0 0 chr1 191975092 191975133 -5220299 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 2049 273 89 0 0 chr1 191975133 191975177 -5220255 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 2049 274 282 0 0 chr1 191975178 191975249 -5220183 - RMER30 DNA MER1_type -120 82 12 8 2049 203 79 26 0 chr1 191975880 191975918 -5219514 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 2049 328 85 0 21 chr1 191975921 191975969 -5219463 + HAL1-3A_ME LINE L1 1981 2027 -831 8 2049 224 213 0 0 chr1 191975969 191976016 -5219416 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 2049 327 118 20 0 chr1 191976020 191976071 -5219361 + HAL1-3A_ME LINE L1 1976 2027 -831 8 2049 416 171 9 0 chr1 191976072 191976183 -5219249 + (CA)n Simple_repeat Simple_repeat 2 113 0 8 2049 327 118 20 0 chr1 191976183 191976234 -5219198 + HAL1-3A_ME LINE L1 1976 2027 -831 8 2049 976 104 6 9 chr1 191976268 191976621 -5218811 + (CA)n Simple_repeat Simple_repeat 1 351 0 8 2049 414 0 0 0 chr1 191978558 191978604 -5216828 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 2049 246 81 0 0 chr1 191978888 191978925 -5216507 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 2049 188 67 33 0 chr1 191980072 191980102 -5215330 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 2049 270 295 218 8 chr1 191980652 191980785 -5214647 + B4A SINE B4 61 221 -71 8 2049 523 192 20 0 chr1 191980692 191980791 -5214641 + PB1D10 SINE Alu 17 117 0 8 2049 245 267 7 60 chr1 191981426 191981517 -5213915 + ID4_ SINE ID 5 85 -67 8 2049 180 0 0 0 chr1 191982445 191982465 -5212967 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 2049 604 145 19 12 chr1 191982465 191982626 -5212806 + GA-rich Low_complexity Low_complexity 2 163 0 8 2049 396 0 0 0 chr1 191983582 191983626 -5211806 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 2049 249 194 13 107 chr1 191984193 191984268 -5211164 + B1F SINE Alu 82 149 0 8 2049 181 75 0 48 chr1 191987735 191987777 -5207655 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 8 2049 23 68 0 0 chr1 191988712 191988756 -5206676 + AT_rich Low_complexity Low_complexity 1 44 0 8 2049 411 137 0 0 chr1 191990207 191990280 -5205152 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 2049 351 104 0 0 chr1 191990284 191990332 -5205100 + HAL1-3A_ME LINE L1 1976 2023 -835 8 2049 576 0 0 0 chr1 191991909 191991973 -5203459 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 2049 21 0 0 0 chr1 191992451 191992472 -5202960 + AT_rich Low_complexity Low_complexity 1 21 0 8 2049 326 143 16 0 chr1 191994175 191994238 -5201194 + CT-rich Low_complexity Low_complexity 2 65 0 8 2049 270 267 0 49 chr1 191994345 191994467 -5200965 + G-rich Low_complexity Low_complexity 2 117 0 8 2049 21 0 0 0 chr1 191994855 191994876 -5200556 + GC_rich Low_complexity Low_complexity 1 21 0 8 2049 216 0 0 0 chr1 191994940 191994964 -5200468 + (T)n Simple_repeat Simple_repeat 1 24 0 8 2049 510 17 0 0 chr1 191996103 191996162 -5199270 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 2049 402 21 0 0 chr1 191997917 191997964 -5197468 + (TAA)n Simple_repeat Simple_repeat 2 48 0 8 2049 513 0 0 0 chr1 191998509 191998566 -5196866 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 2049 237 203 108 15 chr1 192000169 192000234 -5195198 + MIR SINE MIR 81 151 -111 1 2049 246 95 0 0 chr1 192000718 192000760 -5194672 + (A)n Simple_repeat Simple_repeat 1 42 0 2 2049 378 0 0 0 chr1 192001541 192001583 -5193849 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 2049 549 0 0 0 chr1 192001583 192001643 -5193789 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 2049 396 0 0 0 chr1 192001725 192001769 -5193663 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 2049 576 42 0 0 chr1 192002155 192002226 -5193206 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 2049 747 269 0 30 chr1 192002911 192003114 -5192318 + B3A SINE B2 2 198 0 7 2049 226 316 20 10 chr1 192003336 192003435 -5191997 - MIRm SINE MIR -122 154 55 8 2049 2344 167 53 128 chr1 192003435 192004054 -5191378 - RMER15 LTR ERVL 0 575 3 9 2049 838 238 62 0 chr1 192004123 192004316 -5191116 - B3 SINE B2 -11 205 1 1 2049 235 304 11 21 chr1 192005187 192005281 -5190151 + CT-rich Low_complexity Low_complexity 3 95 0 1 2049 232 282 28 14 chr1 192005302 192005374 -5190058 - ID4_ SINE ID -8 75 3 1 2049 306 51 0 0 chr1 192006590 192006629 -5188803 - HAL1-3A_ME LINE L1 -845 2013 1975 1 2049 876 183 3 0 chr1 192006643 192007002 -5188430 + (TG)n Simple_repeat Simple_repeat 1 360 0 1 2049 206 220 0 0 chr1 192007077 192007136 -5188296 + T-rich Low_complexity Low_complexity 2 60 0 1 2049 953 113 7 0 chr1 192007137 192007287 -5188145 + (TCCC)n Simple_repeat Simple_repeat 4 154 0 1 2049 594 272 52 86 chr1 192007293 192007431 -5188001 - B4 SINE B4 -67 225 87 1 2049 255 79 0 0 chr1 192007431 192007469 -5187963 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 2049 594 272 52 86 chr1 192007469 192007563 -5187869 - B4 SINE B4 -206 86 1 1 2049 933 213 29 19 chr1 192007746 192007952 -5187480 - B3 SINE B2 -8 208 1 1 2049 984 62 0 0 chr1 192007967 192008095 -5187337 + (TTTCC)n Simple_repeat Simple_repeat 5 132 0 2 2049 686 158 11 33 chr1 192008097 192008280 -5187152 + C-rich Low_complexity Low_complexity 2 180 0 2 2049 345 288 113 8 chr1 192010022 192010155 -5185277 - B1F SINE Alu -2 147 1 2 2049 1154 258 77 19 chr1 192010252 192010631 -5184801 + MTD LTR MaLR 4 404 -15 2 2049 519 311 36 31 chr1 192010720 192010916 -5184516 - B4 SINE B4 -14 278 82 2 2049 216 260 21 112 chr1 192010905 192010965 -5184467 - BC1_Mm scRNA scRNA -21 131 2 2 2049 333 265 24 0 chr1 192010965 192011048 -5184384 - B4A SINE B4 -206 86 2 2 2049 824 148 13 0 chr1 192011809 192011958 -5183474 + CT-rich Low_complexity Low_complexity 3 153 0 2 2049 324 0 0 0 chr1 192011973 192012009 -5183423 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2 2049 4401 80 7 3 chr1 192012021 192012663 -5182769 - L1_Mus4 LINE L1 0 6636 6055 2 2049 198 171 0 0 chr1 192012795 192012836 -5182596 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 2049 312 70 0 0 chr1 192013408 192013451 -5181981 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 2049 635 291 139 0 chr1 192013465 192013702 -5181730 - B4 SINE B4 -22 270 1 3 2049 846 30 0 0 chr1 192013925 192014026 -5181406 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 2049 192 77 0 0 chr1 192014151 192014177 -5181255 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3 2049 188 135 0 26 chr1 192014432 192014470 -5180962 + T-rich Low_complexity Low_complexity 2 38 0 3 2049 393 22 0 0 chr1 192017706 192017752 -5177680 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 2049 1131 139 112 24 chr1 192017774 192017980 -5177452 + URR1A DNA MER1_type 3 226 0 3 2049 216 86 0 0 chr1 192018009 192018044 -5177388 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 3 2049 243 309 95 7 chr1 192018067 192018204 -5177228 - B1F2 SINE Alu 0 149 1 3 2049 208 277 43 0 chr1 192018298 192018392 -5177040 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 3 2049 647 284 91 0 chr1 192019274 192019471 -5175961 - B3 SINE B2 -1 215 1 4 2049 295 314 35 12 chr1 192019474 192019620 -5175812 - L1M3 LINE L1 -538 5774 5623 4 2049 787 177 147 16 chr1 192019833 192020017 -5175415 + B3 SINE B2 1 208 -8 4 256 273 152 34 0 chr1 192020450 192020509 -5174923 - ORR1D1 LTR MaLR -131 243 183 4 2050 708 12 0 0 chr1 192020515 192020596 -5174836 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 2050 679 212 7 0 chr1 192020596 192020733 -5174699 - ORR1D1 LTR MaLR -235 139 2 4 2050 585 185 0 0 chr1 192020764 192020883 -5174549 + GA-rich Low_complexity Low_complexity 3 121 0 4 2050 288 238 12 59 chr1 192021156 192021241 -5174191 + MLT1J2 LTR MaLR 368 448 0 4 2050 899 250 60 68 chr1 192021887 192022250 -5173182 - MTE2a LTR MaLR -14 405 40 4 2050 874 179 104 35 chr1 192022250 192022452 -5172980 + B3 SINE B2 1 216 0 4 2050 859 287 43 79 chr1 192022452 192022521 -5172911 - MTE2a LTR MaLR -366 53 1 4 2050 343 311 139 40 chr1 192022712 192022913 -5172519 - LTR33B LTR ERVL -227 276 56 4 2050 27 29 0 0 chr1 192022936 192022970 -5172462 + AT_rich Low_complexity Low_complexity 1 34 0 5 2050 642 222 160 11 chr1 192022978 192023165 -5172267 - B3 SINE B2 0 216 2 5 2050 24 53 0 0 chr1 192026296 192026334 -5169098 + AT_rich Low_complexity Low_complexity 1 38 0 5 2050 939 244 5 23 chr1 192026334 192026552 -5168880 - B3 SINE B2 -2 214 1 5 2050 460 237 130 45 chr1 192026558 192026735 -5168697 - B3A SINE B2 -5 193 2 5 2050 403 285 0 21 chr1 192026842 192027174 -5168258 + (CATATA)n Simple_repeat Simple_repeat 1 324 0 5 2050 198 103 0 0 chr1 192028664 192028693 -5166739 + (T)n Simple_repeat Simple_repeat 1 29 0 5 2050 306 261 69 43 chr1 192029234 192029350 -5166082 - PB1D7 SINE Alu -1 119 1 5 2050 843 101 8 40 chr1 192029390 192029638 -5165794 + (TG)n Simple_repeat Simple_repeat 1 239 0 5 2050 366 276 20 10 chr1 192030474 192030573 -5164859 - B1F SINE Alu -13 136 37 5 2050 198 328 15 0 chr1 192031716 192031783 -5163649 - MIR SINE MIR -122 86 19 6 2050 198 71 0 0 chr1 192033031 192033059 -5162373 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 6 2050 268 299 0 13 chr1 192033059 192033137 -5162295 - ID4 SINE ID -5 78 2 6 2050 281 248 119 40 chr1 192033156 192033282 -5162150 - B1F1 SINE Alu -9 140 5 6 2050 217 272 33 2 chr1 192035069 192035139 -5160293 + L2b LINE L2 3230 3328 -59 6 2050 534 112 79 0 chr1 192035298 192035387 -5160045 - PB1D9 SINE Alu -8 112 17 6 2050 210 316 21 0 chr1 192035527 192035622 -5159810 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 2050 23 0 0 0 chr1 192035647 192035670 -5159762 + AT_rich Low_complexity Low_complexity 1 23 0 6 2050 491 0 129 7 chr1 192035678 192035818 -5159614 + (TA)n Simple_repeat Simple_repeat 1 157 0 6 2050 49 101 0 0 chr1 192035818 192035986 -5159446 + AT_rich Low_complexity Low_complexity 1 168 0 6 2050 438 3 13 125 chr1 192035986 192036320 -5159112 + (TA)n Simple_repeat Simple_repeat 1 296 0 7 2050 754 330 70 26 chr1 192036331 192036673 -5158759 - Lx8 LINE L1 -207 7266 6910 7 2050 988 61 0 8 chr1 192036703 192036836 -5158596 - B1_Mm SINE Alu -1 146 15 7 2050 260 278 177 53 chr1 192037114 192037323 -5158109 + L1M5 LINE L1 4785 5019 -1127 7 2050 353 223 57 89 chr1 192037831 192037954 -5157478 - Lx8 LINE L1 -2 7471 7353 7 2050 875 183 42 16 chr1 192039277 192039466 -5155966 + B3 SINE B2 23 216 0 7 2050 237 240 206 10 chr1 192039964 192040061 -5155371 - MTEb LTR MaLR -157 222 107 7 2050 197 232 14 0 chr1 192041179 192041248 -5154184 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 2050 570 29 0 0 chr1 192041254 192041322 -5154110 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 2050 341 271 64 24 chr1 192041332 192041457 -5153975 - MER2 DNA MER2_type -25 320 191 7 2050 405 258 0 20 chr1 192041500 192041599 -5153833 - B1F1 SINE Alu -24 125 29 8 2050 303 223 53 11 chr1 192041597 192041692 -5153740 - MER2 DNA MER2_type -146 199 101 7 2050 470 96 14 0 chr1 192041833 192041906 -5153526 + (TA)n Simple_repeat Simple_repeat 2 75 0 8 2050 312 27 0 0 chr1 192041906 192041942 -5153490 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 2050 382 295 49 49 chr1 192042277 192042441 -5152991 - RSINE1 SINE B4 0 165 2 8 2050 413 325 72 43 chr1 192042988 192043197 -5152235 - B4A SINE B4 -77 215 1 8 2050 962 277 76 66 chr1 192043594 192044096 -5151336 - Lx8 LINE L1 0 7473 6967 8 2050 21 0 0 0 chr1 192044315 192044336 -5151096 + AT_rich Low_complexity Low_complexity 1 21 0 8 2050 1424 202 85 44 chr1 192045584 192045973 -5149459 - MTD LTR MaLR -14 405 1 8 2050 2767 269 50 45 chr1 192046622 192047502 -5147930 - Lx8 LINE L1 -2 7471 6588 8 2050 506 276 49 0 chr1 192048097 192048220 -5147212 + RSINE1 SINE B4 4 132 -33 8 2050 21 0 0 0 chr1 192048245 192048266 -5147166 + AT_rich Low_complexity Low_complexity 1 21 0 9 2050 743 262 10 45 chr1 192048280 192048463 -5146969 + B3A SINE B2 2 181 -17 9 2050 405 0 0 0 chr1 192048463 192048508 -5146924 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 2050 743 262 10 45 chr1 192048508 192048524 -5146908 + B3A SINE B2 182 194 -4 9 2050 616 154 208 7 chr1 192048718 192048862 -5146570 - MTD LTR MaLR 0 419 247 9 2050 425 292 31 43 chr1 192049045 192049206 -5146226 - RLTR14 LTR ERV1 0 382 224 9 2050 275 218 18 0 chr1 192049926 192049981 -5145451 - RLTR14-int LTR ERV1 -497 4820 4765 9 2050 2534 79 0 6 chr1 192050540 192050882 -5144550 + L1_Mus4 LINE L1 6295 6634 -2 9 2050 567 316 135 24 chr1 192050925 192051304 -5144128 - RLTR6-int LTR ERV1 -2434 5344 4924 9 2050 547 332 77 62 chr1 192051682 192052187 -5143245 - MURVY-int LTR ERV1 -3157 4449 4029 9 2050 309 339 0 0 chr1 192052328 192052437 -5142995 - MURVY-int LTR ERV1 -1138 3552 3444 9 2050 441 252 225 18 chr1 192054119 192054341 -5141091 - RMER15 LTR ERVL -14 561 294 9 2050 829 276 62 36 chr1 192056738 192057013 -5138419 - B4A SINE B4 -8 284 3 9 2050 222 269 0 0 chr1 192057095 192057147 -5138285 + CT-rich Low_complexity Low_complexity 1 52 0 1 2050 430 315 68 34 chr1 192057454 192057661 -5137771 - MER20 DNA MER1_type -2 217 4 1 2050 213 39 0 0 chr1 192058058 192058084 -5137348 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 2050 441 339 31 31 chr1 192058213 192058408 -5137024 - B4A SINE B4 -93 199 5 1 2050 372 94 0 0 chr1 192059338 192059391 -5136041 + (CACCAT)n Simple_repeat Simple_repeat 4 56 0 1 2050 317 215 48 18 chr1 192059660 192059888 -5135544 + (TCTA)n Simple_repeat Simple_repeat 1 234 0 1 2050 285 75 0 0 chr1 192059910 192059950 -5135482 + (TATG)n Simple_repeat Simple_repeat 3 42 0 1 2050 792 109 29 0 chr1 192059950 192060088 -5135344 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 1 2050 288 0 0 0 chr1 192060292 192060324 -5135108 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 2050 307 333 81 29 chr1 192060336 192060472 -5134960 + MER45A DNA Tip100 35 177 -1 1 2050 185 0 40 0 chr1 192061678 192061703 -5133729 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 2050 341 226 3 16 chr1 192061709 192061800 -5133632 - L1MA8 LINE L1 -42 6270 6184 1 2050 183 376 73 0 chr1 192062493 192062602 -5132830 - MIRm SINE MIR -114 162 46 1 2050 509 266 74 98 chr1 192062728 192063024 -5132408 - Lx9 LINE L1 -7 7637 7349 1 2050 345 159 0 0 chr1 192063125 192063188 -5132244 + CT-rich Low_complexity Low_complexity 2 64 0 1 2050 325 302 98 37 chr1 192063835 192063998 -5131434 - MIR3 SINE MIR -83 185 12 1 2050 23 0 0 0 chr1 192064158 192064181 -5131251 + AT_rich Low_complexity Low_complexity 1 23 0 1 2050 658 279 88 0 chr1 192064528 192064732 -5130700 + ID_B1 SINE B4 1 222 -2 1 2050 470 338 43 0 chr1 192065128 192065338 -5130094 + L1ME2z LINE L1 5608 5826 -618 1 2050 280 319 35 35 chr1 192065431 192065574 -5129858 + L1ME2z LINE L1 6006 6148 -16 1 2050 422 275 71 79 chr1 192066086 192066321 -5129111 + B4 SINE B4 65 274 -18 1 2050 228 35 0 0 chr1 192066329 192066358 -5129074 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 2050 504 0 0 0 chr1 192066892 192066948 -5128484 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 2050 71 74 0 0 chr1 192066961 192067109 -5128323 + AT_rich Low_complexity Low_complexity 1 148 0 1 2050 22 0 0 0 chr1 192067371 192067393 -5128039 + AT_rich Low_complexity Low_complexity 1 22 0 1 2050 396 0 0 0 chr1 192067520 192067564 -5127868 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 2050 437 299 75 0 chr1 192067879 192068013 -5127419 + B3A SINE B2 3 146 -52 1 2050 297 0 0 0 chr1 192068018 192068051 -5127381 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 2050 339 302 52 69 chr1 192069406 192069713 -5125719 - Lx8 LINE L1 -529 7167 6867 1 2050 648 220 139 16 chr1 192069716 192069961 -5125471 + Lx8 LINE L1 7198 7472 -1 1 2050 745 255 0 13 chr1 192070237 192070388 -5125044 - B1_Mur2 SINE Alu 0 149 1 1 2050 206 205 0 0 chr1 192070419 192070458 -5124974 + GA-rich Low_complexity Low_complexity 4 42 0 1 2050 275 281 54 82 chr1 192070508 192070655 -5124777 + RMER15 LTR ERVL 8 150 -425 1 2050 499 298 52 60 chr1 192070756 192070988 -5124444 + RMER15 LTR ERVL 344 573 -2 1 2050 401 271 32 24 chr1 192071799 192071924 -5123508 - LTR75_1 LTR ERV1 -224 322 197 1 2050 1943 165 31 63 chr1 192072471 192072853 -5122579 + ORR1D2 LTR MaLR 1 370 0 1 2050 279 0 0 0 chr1 192072944 192072975 -5122457 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 2050 752 249 85 15 chr1 192073457 192073657 -5121775 + B3 SINE B2 2 215 -1 1 2050 292 333 18 0 chr1 192073885 192073996 -5121436 - PB1D10 SINE Alu -1 116 4 1 2050 295 177 4 34 chr1 192075082 192075141 -5120291 - B4A SINE B4 -16 276 216 1 2050 207 190 0 0 chr1 192075142 192075200 -5120232 + CT-rich Low_complexity Low_complexity 1 58 0 1 2050 351 0 0 0 chr1 192075200 192075239 -5120193 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 2050 414 358 53 24 chr1 192075239 192075448 -5119984 - B4A SINE B4 -76 216 2 1 2050 218 359 13 0 chr1 192076719 192076797 -5118635 + PB1D10 SINE Alu 22 100 -17 1 2050 351 324 29 17 chr1 192077139 192077312 -5118120 + (TCTCTG)n Simple_repeat Simple_repeat 3 177 0 1 2050 296 296 71 10 chr1 192079191 192079290 -5116142 + MTEa LTR MaLR 264 368 -11 1 2050 34 42 0 0 chr1 192079443 192079491 -5115941 + AT_rich Low_complexity Low_complexity 1 48 0 1 2050 901 208 27 20 chr1 192079748 192080006 -5115426 - Lx7 LINE L1 -13 5867 5616 1 2050 2444 156 19 57 chr1 192081534 192082011 -5113421 - RMER6B LTR ERVK -2 459 1 1 2050 891 313 35 7 chr1 192082716 192082999 -5112433 + B4A SINE B4 2 292 0 1 2050 435 119 0 0 chr1 192083048 192083115 -5112317 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 2050 426 281 25 44 chr1 192084041 192084270 -5111162 + CT-rich Low_complexity Low_complexity 1 224 0 1 2050 349 95 16 16 chr1 192084395 192084459 -5110973 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 2050 470 289 104 16 chr1 192085756 192086303 -5109129 - L1ME1 LINE L1 -1644 6141 5504 1 2050 210 152 43 21 chr1 192086673 192086720 -5108712 + CT-rich Low_complexity Low_complexity 1 48 0 1 2050 227 233 0 0 chr1 192086720 192086763 -5108669 - L1ME1 LINE L1 -1204 4942 4900 1 2050 289 136 63 74 chr1 192086814 192086909 -5108523 - Lx3A LINE L1 -1 6980 6887 1 2050 295 288 0 15 chr1 192087382 192087449 -5107983 - B4 SINE B4 -2 290 225 1 2050 181 304 49 57 chr1 192088315 192088437 -5106995 - L3 LINE CR1 -1108 3381 3261 1 2050 182 312 62 0 chr1 192089013 192089077 -5106355 - MIRb SINE MIR -70 198 131 1 2050 282 198 37 28 chr1 192089699 192089808 -5105624 - L1MA5 LINE L1 0 6300 6191 1 2050 26 0 0 0 chr1 192090403 192090429 -5105003 + AT_rich Low_complexity Low_complexity 1 26 0 1 2050 384 349 118 56 chr1 192091072 192091625 -5103807 + MLT1J-int LTR MaLR 323 909 -478 1 2050 402 74 0 0 chr1 192092485 192092539 -5102893 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 2050 180 0 0 0 chr1 192092629 192092649 -5102783 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 2050 203 256 0 0 chr1 192092651 192092694 -5102738 + (CATG)n Simple_repeat Simple_repeat 2 44 0 1 2050 373 370 6 0 chr1 192095938 192096103 -5099329 + (TG)n Simple_repeat Simple_repeat 2 167 0 1 2050 374 164 15 0 chr1 192096133 192096200 -5099232 - HAL1-3A_ME LINE L1 -822 2036 1969 1 2050 500 30 15 0 chr1 192096799 192096865 -5098567 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 1 2050 251 266 15 15 chr1 192096950 192097015 -5098417 + MIRm SINE MIR 201 265 -11 1 2050 374 250 0 0 chr1 192097420 192097491 -5097941 + MER5A DNA MER1_type 6 76 -113 1 2050 529 264 23 31 chr1 192097491 192097620 -5097812 + RSINE1 SINE B4 3 130 -35 1 2050 485 104 0 13 chr1 192097623 192097701 -5097731 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 2050 340 280 21 0 chr1 192097719 192097812 -5097620 + MER5A DNA MER1_type 63 157 -32 1 2050 203 189 0 19 chr1 192098086 192098140 -5097292 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 2050 401 215 27 0 chr1 192098179 192098328 -5097104 + (TG)n Simple_repeat Simple_repeat 1 153 0 1 2050 446 207 6 17 chr1 192098344 192098521 -5096911 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 2050 208 221 13 13 chr1 192099515 192099593 -5095839 + GA-rich Low_complexity Low_complexity 3 80 0 1 2050 570 54 0 0 chr1 192099629 192099703 -5095729 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 2050 576 321 45 56 chr1 192101061 192101328 -5094104 + B4A SINE B4 1 264 -28 1 2050 324 120 0 0 chr1 192101369 192101419 -5094013 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 2050 590 320 109 24 chr1 192102387 192102726 -5092706 + MLT1D LTR MaLR 7 374 -131 1 2050 1917 161 29 0 chr1 192102823 192103133 -5092299 + ORR1A2 LTR MaLR 1 319 -8 1 2050 314 328 39 16 chr1 192103136 192103263 -5092169 - MER44B DNA MER2_type -38 512 383 1 2050 632 299 124 28 chr1 192103321 192103538 -5091894 - MER44B DNA MER2_type -304 246 9 1 2050 189 0 0 0 chr1 192105465 192105486 -5089946 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 2050 633 27 0 0 chr1 192105486 192105560 -5089872 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 2050 764 298 79 54 chr1 192105597 192105877 -5089555 - B4A SINE B4 0 292 6 1 2050 205 258 14 83 chr1 192105908 192105980 -5089452 - MIRb SINE MIR -71 197 131 1 2050 225 0 0 0 chr1 192106445 192106470 -5088962 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 2050 433 305 101 84 chr1 192106477 192106763 -5088669 - B4A SINE B4 0 292 2 1 2050 326 247 0 58 chr1 192106763 192106849 -5088583 - PB1D10 SINE Alu -2 115 35 1 2050 242 158 32 95 chr1 192108442 192108505 -5086927 - L3 LINE CR1 -3 4486 4428 1 2050 351 0 0 0 chr1 192109302 192109341 -5086091 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 2050 782 271 59 130 chr1 192111113 192111436 -5083996 + MTE2a LTR MaLR 1 300 -79 1 2050 540 0 0 0 chr1 192111599 192111659 -5083773 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 2050 243 0 0 0 chr1 192112208 192112235 -5083197 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 2050 423 0 0 0 chr1 192112235 192112281 -5083151 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 2050 442 380 80 0 chr1 192112281 192112431 -5083001 - B3A SINE B2 -31 167 6 1 2050 459 0 0 0 chr1 192112661 192112712 -5082720 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 2050 363 358 102 5 chr1 192113559 192113775 -5081657 - LTR16A LTR ERVL -58 393 157 1 2050 285 128 0 0 chr1 192115384 192115431 -5080001 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 1 2050 979 246 113 35 chr1 192115501 192115758 -5079674 - B4 SINE B4 -6 286 10 1 2050 362 328 115 14 chr1 192116264 192116403 -5079029 - Tigger7 DNA MER2_type -11 2480 2379 1 2050 1046 285 125 54 chr1 192116401 192116589 -5078843 - MER44C DNA MER2_type -238 495 275 1 2050 438 20 0 0 chr1 192116589 192116640 -5078792 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 2050 333 123 0 0 chr1 192116643 192116708 -5078724 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 1 2050 1046 285 125 54 chr1 192116708 192116956 -5078476 - MER44C DNA MER2_type -459 274 28 1 2050 381 160 26 26 chr1 192117169 192117246 -5078186 + MTE2b LTR MaLR 289 365 -14 1 2050 225 392 72 46 chr1 192117978 192118173 -5077259 - MamSINE1 SINE tRNA -70 220 21 1 2050 1180 254 65 43 chr1 192118279 192118650 -5076782 + MTE2b LTR MaLR 1 379 0 2 2050 216 0 0 0 chr1 192118772 192118796 -5076636 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 2050 424 222 48 71 chr1 192119204 192119330 -5076102 + MamSINE1 SINE tRNA 7 129 -161 2 2050 366 285 61 34 chr1 192119879 192120105 -5075327 + MIRb SINE MIR 20 238 -24 2 2050 855 150 60 0 chr1 192120759 192120892 -5074540 - B1_Mur1 SINE Alu -6 143 3 2 2050 354 210 0 2 chr1 192121131 192121210 -5074222 - L1ME1 LINE L1 -459 5900 5823 2 2050 306 0 0 0 chr1 192121594 192121628 -5073804 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2 2050 303 141 0 0 chr1 192123448 192123512 -5071920 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 2050 569 320 56 38 chr1 192128339 192128605 -5066827 + B4A SINE B4 17 287 -5 2 2050 230 268 14 14 chr1 192131259 192131331 -5064101 + MLT1A1 LTR MaLR 337 408 0 2 2050 374 313 17 74 chr1 192132376 192132552 -5062880 - MIRb SINE MIR -37 231 66 2 2050 195 69 0 0 chr1 192132591 192132620 -5062812 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 2050 933 90 0 0 chr1 192132627 192132782 -5062650 + (TC)n Simple_repeat Simple_repeat 2 156 0 2 2050 337 242 125 10 chr1 192132784 192132880 -5062552 - ID_B1 SINE B4 -27 197 91 2 2050 202 276 17 0 chr1 192132975 192133033 -5062399 + GA-rich Low_complexity Low_complexity 2 60 0 2 2050 321 140 0 0 chr1 192133071 192133128 -5062304 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 2050 255 79 0 0 chr1 192133136 192133174 -5062258 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 2050 579 263 241 9 chr1 192133356 192133573 -5061859 + B4A SINE B4 21 288 -4 2 2050 258 323 104 87 chr1 192133894 192134077 -5061355 + MLT1A LTR MaLR 172 357 -17 2 2050 475 268 23 87 chr1 192134313 192134485 -5060947 - RSINE1 SINE B4 0 165 5 2 2050 252 0 0 0 chr1 192134552 192134580 -5060852 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 2050 477 0 0 0 chr1 192134653 192134706 -5060726 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 2050 270 0 0 0 chr1 192134706 192134735 -5060697 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 2050 270 0 0 0 chr1 192135682 192135712 -5059720 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 2050 943 291 47 16 chr1 192135770 192136028 -5059404 - B4 SINE B4 -18 274 9 2 2050 260 287 39 77 chr1 192136586 192136767 -5058665 - RLTR40 LTR ERVK -146 671 498 2 2050 196 307 85 78 chr1 192136959 192137266 -5058166 - L2 LINE L2 -2789 630 322 2 2050 704 221 73 13 chr1 192137590 192137741 -5057691 + ID_B1 SINE B4 2 161 -63 2 2050 448 294 28 0 chr1 192137746 192137855 -5057577 + RSINE1 SINE B4 13 124 -41 2 2050 513 71 0 0 chr1 192137877 192137947 -5057485 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2 2050 352 247 33 33 chr1 192138488 192138580 -5056852 + B4 SINE B4 2 93 -199 2 2050 778 237 83 29 chr1 192138584 192138788 -5056644 + B3 SINE B2 2 216 0 2 2050 207 333 0 0 chr1 192138895 192138949 -5056483 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 2050 493 356 108 52 chr1 192139065 192139716 -5055716 + L1MC LINE L1 3937 4623 -1523 2 2050 1478 221 24 72 chr1 192140050 192140382 -5055050 - MTE2b LTR MaLR -61 318 3 2 2050 720 245 103 20 chr1 192141122 192141326 -5054106 + ID_B1 SINE B4 2 222 -2 2 2050 540 308 99 56 chr1 192141944 192142835 -5052597 + L1ME2 LINE L1 4996 5925 -239 2 2050 779 242 139 5 chr1 192142938 192142962 -5052470 - MTD LTR MaLR -63 356 333 2 2050 705 24 0 0 chr1 192142962 192143045 -5052387 + (TAGA)n Simple_repeat Simple_repeat 1 83 0 2 2050 779 250 139 8 chr1 192143045 192143280 -5052152 - MTD LTR MaLR -87 332 55 2 2050 459 0 0 0 chr1 192143573 192143624 -5051808 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 2050 291 213 234 0 chr1 192144501 192144575 -5050857 + RSINE1 SINE B4 44 139 -26 2 2050 486 0 0 0 chr1 192144575 192144629 -5050803 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 2050 291 213 234 0 chr1 192144629 192144648 -5050784 + RSINE1 SINE B4 140 158 -7 2 2050 399 157 0 0 chr1 192144651 192144721 -5050711 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 2050 248 338 58 0 chr1 192145419 192145558 -5049874 - MIR SINE MIR -77 185 39 2 2050 1022 143 0 4 chr1 192146074 192146343 -5049089 + (TCC)n Simple_repeat Simple_repeat 1 267 0 2 2050 201 211 0 0 chr1 192146360 192146412 -5049020 + CT-rich Low_complexity Low_complexity 1 52 0 2 2050 1047 137 0 0 chr1 192146617 192146792 -5048640 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2 2050 697 201 29 15 chr1 192146849 192146985 -5048447 - ID_B1 SINE B4 0 224 87 2 2050 228 43 21 42 chr1 192147173 192147221 -5048211 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 2050 872 180 120 47 chr1 192148104 192148296 -5047136 + B3 SINE B2 1 206 -10 2 2050 486 262 205 45 chr1 192148644 192148868 -5046564 + MLT2C2 LTR ERVL 99 358 -106 2 2050 4460 20 0 0 chr1 192148985 192149478 -5045954 + MT2_Mm LTR ERVL 1 493 0 2 2050 390 246 75 60 chr1 192149480 192149614 -5045818 - RMER30 DNA MER1_type -60 142 7 2 2050 399 106 0 0 chr1 192150000 192150066 -5045366 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 2051 415 289 11 203 chr1 192152240 192152340 -5043092 + B4 SINE B4 1 78 -214 2 2051 1167 190 19 0 chr1 192152340 192152545 -5042887 + B3 SINE B2 1 209 -7 2 2051 415 303 19 196 chr1 192152545 192152686 -5042746 + B4 SINE B4 79 205 -87 2 2051 216 179 0 49 chr1 192153268 192153309 -5042123 + ID2 SINE ID 44 82 -1 2 2051 252 294 0 0 chr1 192153660 192153779 -5041653 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 2051 605 169 5 43 chr1 192154579 192154764 -5040668 + GA-rich Low_complexity Low_complexity 3 180 0 2 2051 246 220 0 0 chr1 192154803 192154862 -5040570 + GA-rich Low_complexity Low_complexity 2 60 0 2 2051 302 314 102 48 chr1 192154885 192155032 -5040400 + HAL1-3A_ME LINE L1 2284 2438 -420 2 2051 329 206 27 59 chr1 192155496 192155522 -5039910 - RMER17D LTR ERVK -390 499 474 2 2051 393 70 0 0 chr1 192155522 192155579 -5039853 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 2051 329 206 27 59 chr1 192155579 192155774 -5039658 - RMER17D LTR ERVK -416 473 285 2 2051 331 256 78 0 chr1 192156213 192156303 -5039129 + MTEa LTR MaLR 82 178 -201 2 2051 699 279 202 19 chr1 192156566 192156942 -5038490 - MLT1D LTR MaLR -3 502 58 2 2051 1757 208 49 59 chr1 192159582 192159991 -5035441 + MTD LTR MaLR 1 405 -14 2 2051 322 90 14 29 chr1 192160211 192160280 -5035152 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 2 2051 191 378 61 0 chr1 192160742 192160824 -5034608 + MIR3 SINE MIR 112 198 -10 2 2051 251 335 161 52 chr1 192161896 192162107 -5033325 + MIR SINE MIR 22 255 -7 2 2051 491 307 14 7 chr1 192162131 192162272 -5033160 + MER45A DNA Tip100 3 144 -34 2 2051 182 314 98 33 chr1 192163013 192163135 -5032297 - MIR3 SINE MIR -6 202 73 2 2051 223 333 24 55 chr1 192163848 192163975 -5031457 - L2 LINE L2 -887 2532 2410 2 2051 191 331 126 0 chr1 192164156 192164283 -5031149 - L2 LINE L2 -1158 2261 2119 2 2051 299 195 97 65 chr1 192166064 192166157 -5029275 + L1MA4 LINE L1 5844 5939 -361 2 2051 994 244 25 53 chr1 192167382 192167625 -5027807 + ORR1D2 LTR MaLR 1 236 -134 2 2051 378 0 0 0 chr1 192169261 192169303 -5026129 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 2051 672 267 28 32 chr1 192170173 192170390 -5025042 - B3 SINE B2 0 216 1 2 2051 581 314 79 9 chr1 192172964 192173070 -5022362 + B4A SINE B4 3 116 -176 2 2051 201 39 0 0 chr1 192173070 192173096 -5022336 + (G)n Simple_repeat Simple_repeat 1 26 0 2 2051 581 314 79 9 chr1 192173096 192173217 -5022215 + B4A SINE B4 117 245 -47 2 2051 514 136 25 17 chr1 192173224 192173344 -5022088 + GA-rich Low_complexity Low_complexity 4 124 0 2 2051 936 191 105 16 chr1 192173670 192173861 -5021571 - B3 SINE B2 -7 209 2 2 2051 204 387 77 28 chr1 192173978 192174121 -5021311 + MIRc SINE MIR 48 195 -67 2 2051 245 278 14 0 chr1 192174434 192174506 -5020926 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 2051 788 261 111 8 chr1 192174511 192174674 -5020758 - B4 SINE B4 0 292 106 2 2051 531 0 0 0 chr1 192174674 192174733 -5020699 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 2051 788 261 111 8 chr1 192174733 192174831 -5020601 - B4 SINE B4 -187 105 5 2 2051 8730 4 0 0 chr1 192174842 192175895 -5019537 - L1Md_A LINE L1 0 6582 5530 2 2051 368 169 13 0 chr1 192176746 192176823 -5018609 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 2051 500 304 119 34 chr1 192176845 192177114 -5018318 - B4 SINE B4 0 292 1 2 2051 642 285 33 77 chr1 192179008 192179282 -5016150 + B4A SINE B4 29 290 -2 2 2051 649 167 8 34 chr1 192179451 192179569 -5015863 + PB1D9 SINE Alu 4 118 -2 2 2051 653 266 125 30 chr1 192179604 192180036 -5015396 - L1MA4 LINE L1 -328 5969 5429 2 2051 629 231 37 0 chr1 192180299 192180433 -5014999 + RSINE1 SINE B4 2 140 -25 2 2051 396 40 0 0 chr1 192180433 192180483 -5014949 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 2051 1495 228 39 34 chr1 192181405 192181763 -5013669 - MTD LTR MaLR -46 373 14 2 2051 574 304 75 0 chr1 192183469 192183696 -5011736 + L1MA5A LINE L1 5646 5889 -408 2 2051 445 328 68 24 chr1 192184131 192184337 -5011095 - MLT1A LTR MaLR -129 245 31 2 2051 576 162 0 0 chr1 192185298 192185403 -5010029 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 2051 329 336 51 103 chr1 192186112 192186268 -5009164 + ID_B1 SINE B4 12 159 -65 2 2051 243 0 0 0 chr1 192186296 192186323 -5009109 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 2051 315 247 54 0 chr1 192186896 192186989 -5008443 + L3 LINE CR1 4100 4197 -292 2 2051 1013 281 58 56 chr1 192187017 192187394 -5008038 - MTE2b LTR MaLR -1 378 1 2 2051 189 241 0 0 chr1 192187699 192187753 -5007679 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 2 2051 446 263 26 114 chr1 192188493 192188686 -5006746 - MTEa LTR MaLR 0 379 204 3 2051 638 175 0 22 chr1 192189642 192189823 -5005609 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 2051 506 188 5 49 chr1 192189818 192190003 -5005429 + (TATG)n Simple_repeat Simple_repeat 2 178 0 3 2051 227 224 13 0 chr1 192190014 192190090 -5005342 + (TATG)n Simple_repeat Simple_repeat 4 80 0 3 2051 207 219 0 0 chr1 192191563 192191604 -5003828 + T-rich Low_complexity Low_complexity 1 41 0 3 2051 1236 80 154 0 chr1 192192522 192192710 -5002722 + URR1A DNA MER1_type 3 219 -7 3 2051 449 265 10 10 chr1 192196486 192196585 -4998847 - RSINE1 SINE B4 -38 127 29 3 2051 216 0 0 0 chr1 192198682 192198706 -4996726 + (T)n Simple_repeat Simple_repeat 1 24 0 3 2051 426 65 0 0 chr1 192199793 192199855 -4995577 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 2051 627 316 81 43 chr1 192199900 192200158 -4995274 - B4 SINE B4 -24 268 1 3 2051 504 0 0 0 chr1 192200461 192200517 -4994915 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 2051 851 259 62 0 chr1 192200522 192200715 -4994717 - B4 SINE B4 -4 288 84 3 2051 241 309 52 70 chr1 192201014 192201129 -4994303 + MLT1J2 LTR MaLR 287 399 -49 3 2051 200 270 206 33 chr1 192201907 192202087 -4993345 + L2 LINE L2 1974 2184 -1235 3 2051 542 224 61 34 chr1 192202883 192203031 -4992401 + MLT2C1 LTR ERVL 70 221 -176 3 2051 1092 126 0 0 chr1 192203085 192203259 -4992173 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 3 2051 337 314 73 0 chr1 192203284 192203408 -4992024 + MLT2C1 LTR ERVL 208 340 -57 3 2051 270 0 0 0 chr1 192205437 192205467 -4989965 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 2051 218 278 14 0 chr1 192205972 192206044 -4989388 + GA-rich Low_complexity Low_complexity 2 74 0 3 2051 354 45 0 0 chr1 192206532 192206576 -4988856 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 2051 523 265 184 10 chr1 192206598 192206862 -4988570 + MTE2b LTR MaLR 9 343 -36 3 2051 307 274 86 86 chr1 192206869 192206985 -4988447 + ID_B1 SINE B4 83 198 -26 3 2051 287 277 117 51 chr1 192206870 192207007 -4988425 + B1F SINE Alu 3 148 -1 3 2051 320 291 70 8 chr1 192209917 192210045 -4985387 + L2a LINE L2 3270 3405 -21 3 2051 21 0 0 0 chr1 192210345 192210366 -4985066 + AT_rich Low_complexity Low_complexity 1 21 0 3 2051 30 27 0 0 chr1 192211512 192211549 -4983883 + AT_rich Low_complexity Low_complexity 1 37 0 3 2051 534 54 0 0 chr1 192211851 192211925 -4983507 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 2051 444 184 0 0 chr1 192212591 192212694 -4982738 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 2051 300 137 20 0 chr1 192212695 192212746 -4982686 - HAL1-3A_ME LINE L1 -831 2027 1976 3 2051 457 276 238 6 chr1 192212754 192212918 -4982514 - B4 SINE B4 -86 206 5 3 2051 769 283 61 38 chr1 192213941 192214205 -4981227 - B4A SINE B4 0 292 23 3 2051 252 324 9 27 chr1 192215175 192215286 -4980146 + CT-rich Low_complexity Low_complexity 3 111 0 3 2051 190 302 33 65 chr1 192217573 192217665 -4977767 + MIRc SINE MIR 74 162 -106 3 2051 625 337 91 29 chr1 192218153 192218428 -4977004 + MLT1A LTR MaLR 4 295 -79 3 2051 1414 68 15 35 chr1 192218464 192218662 -4976770 + B2_Mm2 SINE B2 2 195 0 3 2051 607 342 20 10 chr1 192219959 192220160 -4975272 + MER58A DNA MER1_type 22 224 0 3 2051 240 370 58 15 chr1 192221544 192221681 -4973751 + L2c LINE L2 2343 2485 -934 3 2051 441 0 0 0 chr1 192222559 192222608 -4972824 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 2051 987 296 75 28 chr1 192223157 192223519 -4971913 + MTEa LTR MaLR 1 379 0 3 2051 199 333 92 37 chr1 192224423 192224532 -4970900 + L2c LINE L2 3258 3372 -15 3 2051 507 376 9 5 chr1 192224777 192224988 -4970444 + L2b LINE L2 1817 2028 -1391 3 2051 243 328 73 37 chr1 192225136 192225272 -4970160 + L2b LINE L2 2281 2421 -998 3 2051 321 293 48 157 chr1 192225272 192225360 -4970072 + B1F1 SINE Alu 1 83 -66 3 2051 183 80 0 0 chr1 192225360 192225385 -4970047 + (TGGG)n Simple_repeat Simple_repeat 2 26 0 3 2051 321 293 48 157 chr1 192225385 192225462 -4969970 + B1F1 SINE Alu 84 148 -1 3 2051 216 200 40 0 chr1 192225767 192225817 -4969615 + CT-rich Low_complexity Low_complexity 2 53 0 3 2051 267 346 48 36 chr1 192225848 192226133 -4969299 + L2b LINE L2 2840 3148 -278 3 2051 190 277 0 0 chr1 192226294 192226341 -4969091 + L2b LINE L2 3380 3426 0 3 2051 222 171 0 0 chr1 192226909 192226950 -4968482 + T-rich Low_complexity Low_complexity 1 41 0 3 2051 347 265 24 0 chr1 192227810 192227893 -4967539 - MLT1A1 LTR MaLR -32 376 292 3 2051 1690 190 59 39 chr1 192227987 192228343 -4967089 + ORR1D2 LTR MaLR 1 363 -7 3 2051 312 231 16 79 chr1 192228342 192228469 -4966963 - MLT1A1 LTR MaLR -252 122 4 3 2051 569 261 15 0 chr1 192228900 192229030 -4966402 - B4 SINE B4 -4 288 157 3 2051 488 246 103 11 chr1 192229162 192229347 -4966085 + L1MA7 LINE L1 6085 6286 -5 3 2051 967 282 90 76 chr1 192229413 192229599 -4965833 - MTEa LTR MaLR 0 379 197 3 2051 348 24 0 0 chr1 192229599 192229640 -4965792 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 2051 967 282 90 76 chr1 192229640 192229810 -4965622 - MTEa LTR MaLR -183 196 18 3 2051 184 298 45 56 chr1 192230019 192230108 -4965324 + L4 LINE RTE 1388 1475 -554 3 2051 482 325 211 42 chr1 192230231 192230566 -4964866 - HAL1 LINE L1 -609 1898 1538 3 2051 198 0 0 0 chr1 192230566 192230588 -4964844 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 3 2051 482 325 211 42 chr1 192230588 192231072 -4964360 - HAL1 LINE L1 -970 1537 942 3 2051 266 281 131 69 chr1 192231371 192231516 -4963916 - RMER15 LTR ERVL -1 574 421 3 2051 1598 160 68 71 chr1 192232998 192233409 -4962023 - RMER17C LTR ERVK 0 410 1 3 2051 210 67 43 22 chr1 192233860 192233906 -4961526 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 2051 813 253 41 10 chr1 192233913 192234109 -4961323 + B3 SINE B2 8 209 -7 3 2051 998 271 9 14 chr1 192234124 192234334 -4961098 + B4 SINE B4 82 290 -2 3 2051 362 254 15 0 chr1 192234385 192234515 -4960917 + (CATA)n Simple_repeat Simple_repeat 4 135 0 3 2051 253 304 130 46 chr1 192234765 192234896 -4960536 + MLT1E1A LTR MaLR 538 679 -1 3 2051 357 316 12 25 chr1 192236112 192236274 -4959158 + (CATA)n Simple_repeat Simple_repeat 4 163 0 3 2051 181 170 0 54 chr1 192236275 192236331 -4959101 + (CATG)n Simple_repeat Simple_repeat 2 54 0 3 2051 274 246 15 0 chr1 192236477 192236542 -4958890 + ID4 SINE ID 2 67 -16 3 2051 528 303 207 25 chr1 192237252 192237489 -4957943 + B4 SINE B4 2 281 -11 3 2051 1542 149 0 18 chr1 192237597 192237870 -4957562 - Lx LINE L1 -2 6652 6385 3 2051 283 230 9 9 chr1 192237991 192238105 -4957327 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 2051 815 278 29 5 chr1 192238847 192239053 -4956379 + B4 SINE B4 4 214 -78 3 2051 252 0 0 0 chr1 192239053 192239081 -4956351 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 3 2051 677 316 34 8 chr1 192239081 192239110 -4956322 + B4A SINE B4 216 244 -48 3 2051 240 143 0 0 chr1 192239110 192239152 -4956280 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 3 2051 407 224 18 18 chr1 192239233 192239397 -4956035 + (TATG)n Simple_repeat Simple_repeat 3 166 0 3 2051 537 231 0 0 chr1 192239368 192239541 -4955891 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 2051 360 0 0 0 chr1 192239542 192239582 -4955850 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 2051 935 261 97 7 chr1 192240338 192240616 -4954816 - RMER5 LTR ERV1 -30 504 202 3 2051 233 356 110 40 chr1 192240875 192241103 -4954329 - MER2 DNA MER2_type -100 245 2 3 2051 288 321 28 6 chr1 192241277 192241413 -4954019 + MLT1J2 LTR MaLR 76 211 -200 3 2051 202 254 29 15 chr1 192241702 192241770 -4953662 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 3 2051 211 111 0 62 chr1 192241720 192241768 -4953664 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 3 2051 251 327 23 97 chr1 192242056 192242232 -4953200 + RSINE1 SINE B4 2 164 -1 3 2051 189 107 0 0 chr1 192242277 192242305 -4953127 + (TCG)n Simple_repeat Simple_repeat 1 28 0 3 2051 222 37 0 0 chr1 192242674 192242701 -4952731 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 2051 495 0 0 0 chr1 192242701 192242755 -4952677 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 2051 408 245 9 26 chr1 192242846 192242959 -4952473 - MLT1A1 LTR MaLR -4 404 294 3 2051 449 318 147 60 chr1 192243189 192243658 -4951774 - MT2A LTR ERVL -23 510 1 3 2051 1057 271 79 3 chr1 192244687 192245002 -4950430 + MLT1B LTR MaLR 29 367 -23 3 2051 2036 208 10 24 chr1 192245170 192245580 -4949852 + MTB_Mm LTR MaLR 1 404 -3 3 2051 249 176 0 0 chr1 192246057 192246131 -4949301 + CT-rich Low_complexity Low_complexity 1 74 0 3 2051 425 72 0 28 chr1 192246156 192246227 -4949205 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 3 2051 22 0 0 0 chr1 192246742 192246764 -4948668 + AT_rich Low_complexity Low_complexity 1 22 0 3 2051 189 0 0 0 chr1 192247256 192247277 -4948155 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 3 2051 544 314 57 60 chr1 192247320 192247660 -4947772 - ORR1E LTR MaLR -12 367 3 3 2051 2159 158 47 6 chr1 192247768 192248131 -4947301 + ORR1C1 LTR MaLR 1 378 0 3 2051 937 240 71 74 chr1 192248381 192248759 -4946673 + MTE2a LTR MaLR 3 379 0 3 2051 432 346 64 59 chr1 192250058 192250358 -4945074 + B4 SINE B4 3 292 0 3 2051 182 363 21 32 chr1 192250373 192250467 -4944965 + L2c LINE L2 3029 3121 -266 3 2051 414 217 0 0 chr1 192250519 192250634 -4944798 + CT-rich Low_complexity Low_complexity 2 116 0 3 2051 213 289 0 19 chr1 192251464 192251517 -4943915 + ID4 SINE ID 2 53 -30 3 2051 725 181 6 0 chr1 192251805 192251982 -4943450 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 2051 297 217 0 0 chr1 192252001 192252084 -4943348 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 2051 252 328 89 7 chr1 192252101 192252236 -4943196 + MER103 DNA DNA 20 165 -1 3 2051 1102 74 0 63 chr1 192252710 192252868 -4942564 - B1_Mus1 SINE Alu 0 148 1 3 2051 930 247 0 6 chr1 192253872 192254051 -4941381 - B3 SINE B2 -38 178 1 3 2051 852 159 0 0 chr1 192254067 192254243 -4941189 + CT-rich Low_complexity Low_complexity 3 178 0 3 2051 249 179 0 0 chr1 192254243 192254282 -4941150 + polypyrimidine Low_complexity Low_complexity 3 41 0 3 2051 403 275 0 0 chr1 192254419 192254510 -4940922 + RSINE1 SINE B4 3 93 -72 4 2051 214 338 14 0 chr1 192254694 192254765 -4940667 - MIR SINE MIR -151 111 40 4 2051 452 18 18 0 chr1 192255094 192255151 -4940281 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 4 2051 203 161 0 0 chr1 192255176 192255207 -4940225 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 2051 198 0 0 0 chr1 192255608 192255630 -4939802 + (GGGTG)n Simple_repeat Simple_repeat 4 25 0 4 2051 763 289 59 22 chr1 192255695 192255967 -4939465 + B4A SINE B4 9 290 -2 4 2051 207 0 0 0 chr1 192256050 192256073 -4939359 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 2051 567 328 139 8 chr1 192256199 192256457 -4938975 + B4 SINE B4 1 292 0 4 2051 673 175 17 9 chr1 192256593 192256708 -4938724 + B3 SINE B2 1 116 -100 4 2051 282 258 16 0 chr1 192257965 192258027 -4937405 - B4 SINE B4 -196 96 34 4 2051 257 292 122 98 chr1 192258318 192258523 -4936909 - ORR1D1 LTR MaLR -103 271 62 4 2051 871 254 30 66 chr1 192258537 192258840 -4936592 + B4A SINE B4 1 292 0 4 2051 343 189 7 97 chr1 192258843 192259156 -4936276 + (CA)n Simple_repeat Simple_repeat 1 284 0 4 2051 271 0 51 0 chr1 192259369 192259408 -4936024 + (GTTTG)n Simple_repeat Simple_repeat 1 41 0 4 2051 371 283 3 30 chr1 192260074 192260208 -4935224 - MLT1A0 LTR MaLR 0 505 265 4 2051 326 292 57 24 chr1 192260329 192260452 -4934980 - L2a LINE L2 -4 3422 3296 4 2051 250 326 80 15 chr1 192261326 192261463 -4933969 + MLT1J-int LTR MaLR 480 625 -762 4 2051 245 336 179 14 chr1 192261533 192261678 -4933754 + MLT1J-int LTR MaLR 769 937 -450 4 2051 1600 266 50 15 chr1 192263931 192264328 -4931104 + MTD LTR MaLR 9 419 0 4 2051 449 256 104 0 chr1 192264426 192264551 -4930881 + B1_Mur1 SINE Alu 2 139 -10 4 2051 360 0 0 0 chr1 192264551 192264591 -4930841 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 2051 207 0 0 0 chr1 192264591 192264614 -4930818 + (T)n Simple_repeat Simple_repeat 1 23 0 4 2051 220 191 21 21 chr1 192266154 192266202 -4929230 - ID4_ SINE ID -33 50 3 4 2051 240 86 0 0 chr1 192267697 192267732 -4927700 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 4 2051 200 143 0 23 chr1 192268158 192268201 -4927231 + GA-rich Low_complexity Low_complexity 3 44 0 4 2051 995 270 57 21 chr1 192268961 192269241 -4926191 + B4 SINE B4 1 290 -2 4 2051 746 47 0 52 chr1 192269420 192269555 -4925877 + (GAGAA)n Simple_repeat Simple_repeat 2 129 0 4 2051 564 296 100 6 chr1 192269868 192270048 -4925384 - MLT1K LTR MaLR -382 213 17 4 2051 440 301 10 62 chr1 192270119 192270314 -4925118 + MIRc SINE MIR 11 195 -73 4 2051 201 287 62 31 chr1 192270391 192270488 -4924944 - L2 LINE L2 -343 3076 2977 4 2051 891 67 0 0 chr1 192270817 192270936 -4924496 + (GGA)n Simple_repeat Simple_repeat 3 121 0 4 2051 192 77 0 0 chr1 192271142 192271168 -4924264 + (CTG)n Simple_repeat Simple_repeat 1 26 0 4 2051 187 56 0 77 chr1 192272166 192272205 -4923227 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 4 2051 194 23 93 0 chr1 192272704 192272747 -4922685 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 4 2051 261 0 0 0 chr1 192272823 192272852 -4922580 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 2051 360 0 0 0 chr1 192272852 192272891 -4922541 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 2051 212 319 0 0 chr1 192273161 192273233 -4922199 + C-rich Low_complexity Low_complexity 6 77 0 4 2051 422 296 82 74 chr1 192274146 192274228 -4921204 - MTD LTR MaLR -136 283 204 4 2051 1417 196 187 39 chr1 192274228 192274672 -4920760 - RLTR31A_Mm LTR ERVK 0 584 90 4 2051 330 26 0 0 chr1 192274672 192274711 -4920721 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 2051 1417 196 187 39 chr1 192274711 192274775 -4920657 - RLTR31A_Mm LTR ERVK -495 89 2 4 2051 422 296 82 74 chr1 192274775 192274962 -4920470 - MTD LTR MaLR -216 203 12 4 2051 652 197 60 27 chr1 192274933 192275121 -4920311 - MTD-int LTR MaLR -4 1254 1085 4 2051 531 0 0 0 chr1 192276910 192276969 -4918463 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 2051 261 0 0 0 chr1 192277152 192277181 -4918251 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 2051 890 266 96 30 chr1 192277199 192277470 -4917962 - B4A SINE B4 -2 290 2 4 2051 8296 28 0 0 chr1 192279078 192280123 -4915309 - L1Md_T LINE L1 0 6582 5538 4 2051 235 348 14 0 chr1 192280424 192280493 -4914939 - RMER30 DNA MER1_type 0 202 133 4 2051 248 330 10 30 chr1 192280546 192280646 -4914786 + ID4 SINE ID 2 101 -51 4 2051 305 337 51 41 chr1 192281851 192282046 -4913386 + MamSINE1 SINE tRNA 30 226 -64 4 256 1506 246 18 18 chr1 192282291 192282627 -4912805 - ORR1D2 LTR MaLR 0 370 35 4 2052 387 0 0 0 chr1 192282654 192282697 -4912735 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 2052 261 0 0 0 chr1 192283479 192283508 -4911924 + (TAA)n Simple_repeat Simple_repeat 1 29 0 4 2052 405 0 0 0 chr1 192283628 192283673 -4911759 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 2052 635 237 43 7 chr1 192283680 192283820 -4911612 - RSINE1 SINE B4 -18 147 3 4 2052 309 371 58 15 chr1 192283936 192284141 -4911291 - L1M5 LINE L1 -323 5801 5588 4 2052 230 238 21 97 chr1 192284417 192284510 -4910922 + MLT1E1 LTR MaLR 285 370 -284 4 2052 344 237 12 57 chr1 192285255 192285304 -4910128 + B4A SINE B4 1 78 -214 4 2052 231 278 16 107 chr1 192285304 192285425 -4910007 + PB1 SINE Alu 1 110 -17 4 2052 507 296 94 25 chr1 192285476 192285677 -4909755 - B3 SINE B2 0 216 2 4 2052 1148 243 26 63 chr1 192286589 192286892 -4908540 + B4A SINE B4 1 292 0 4 2052 646 112 47 24 chr1 192286892 192287234 -4908198 + (CA)n Simple_repeat Simple_repeat 1 350 0 4 2052 195 280 86 86 chr1 192289121 192289238 -4906194 + MIRb SINE MIR 44 160 -108 4 2052 708 286 47 0 chr1 192289726 192289897 -4905535 - B3A SINE B2 -15 183 5 4 2052 1356 124 36 14 chr1 192289979 192290200 -4905232 + URR1A DNA MER1_type 1 226 0 4 2052 261 0 0 0 chr1 192291820 192291849 -4903583 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 2052 202 0 91 0 chr1 192291970 192292003 -4903429 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 2052 385 276 15 59 chr1 192292196 192292331 -4903101 - RSINE1 SINE B4 -33 132 4 4 2052 293 290 43 11 chr1 192292559 192292653 -4902779 + MIRb SINE MIR 119 215 -47 4 2052 548 235 72 14 chr1 192292882 192293020 -4902412 + B1F SINE Alu 1 146 -3 4 2052 291 289 11 11 chr1 192293025 192293116 -4902316 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 4 2052 186 330 9 86 chr1 192293231 192293347 -4902085 - L2 LINE L2 -824 2595 2489 4 2052 259 275 23 70 chr1 192295978 192296064 -4899368 - RSINE1 SINE B4 -6 159 78 4 2052 318 262 7 129 chr1 192296135 192296278 -4899154 - B4 SINE B4 -86 138 4 4 2052 723 253 37 0 chr1 192296436 192296598 -4898834 + B3A SINE B2 1 168 -30 4 2052 432 55 0 0 chr1 192296600 192296655 -4898777 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 2052 252 0 0 0 chr1 192297791 192297819 -4897613 + (A)n Simple_repeat Simple_repeat 1 28 0 4 2052 270 352 102 20 chr1 192298271 192298306 -4897126 + B4A SINE B4 50 136 -156 4 2052 396 301 39 0 chr1 192298306 192298409 -4897023 + PB1D10 SINE Alu 1 107 -10 4 2052 270 352 102 20 chr1 192298409 192298448 -4896984 + B4A SINE B4 137 239 -53 4 2052 1571 197 95 6 chr1 192298447 192298784 -4896648 + ORR1D1 LTR MaLR 8 374 0 4 2052 803 220 86 11 chr1 192299015 192299263 -4896169 + L1MC1 LINE L1 6026 6294 -39 4 2052 243 0 0 0 chr1 192299263 192299290 -4896142 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 2052 803 220 86 11 chr1 192299290 192299321 -4896111 + L1MC1 LINE L1 6295 6325 -8 4 2052 544 340 74 40 chr1 192299447 192299994 -4895438 + L1MC LINE L1 3678 4362 -1784 4 2052 1010 273 106 60 chr1 192300022 192300366 -4895066 + Lx8 LINE L1 4678 5072 -808 4 2052 543 254 43 91 chr1 192300366 192300518 -4894914 + B3A SINE B2 1 153 -45 4 2052 387 0 0 0 chr1 192300518 192300561 -4894871 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 2052 543 254 43 91 chr1 192300561 192300616 -4894816 + B3A SINE B2 154 198 0 4 2052 1010 273 106 60 chr1 192300616 192300906 -4894526 + Lx8 LINE L1 5073 5341 -539 4 2052 1654 36 0 10 chr1 192300909 192301103 -4894329 + B2_Mm1t SINE B2 2 193 0 4 2052 1094 132 6 6 chr1 192301131 192301299 -4894133 - URR1A DNA MER1_type 0 226 59 4 2052 1076 257 118 26 chr1 192301327 192301863 -4893569 + Lx8 LINE L1 5332 5955 -1689 4 2052 378 42 0 0 chr1 192302125 192302173 -4893259 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 2052 351 0 0 0 chr1 192302173 192302211 -4893221 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 2052 365 70 0 17 chr1 192302243 192302301 -4893131 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 2052 614 150 8 0 chr1 192302301 192302421 -4893011 + GA-rich Low_complexity Low_complexity 3 123 0 4 2052 316 277 0 67 chr1 192302427 192302516 -4892916 - B3 SINE B2 -69 147 65 4 2052 2396 287 112 7 chr1 192302525 192303403 -4892029 + Lx8 LINE L1 6125 7094 -379 4 2052 257 346 9 0 chr1 192303847 192303954 -4891478 + L1MDa LINE L1 1012 1119 -5514 4 2052 542 375 83 59 chr1 192303967 192304710 -4890722 + L1MDa LINE L1 1163 1927 -4706 4 2052 1815 124 21 62 chr1 192305068 192305404 -4890028 + RLTRETN_Mm LTR ERVK 1 322 0 4 2052 954 122 29 0 chr1 192305596 192305735 -4889697 - B1_Mus1 SINE Alu -1 147 5 4 2052 232 180 20 0 chr1 192305998 192306048 -4889384 + L1M5 LINE L1 5712 5762 -362 4 2052 303 276 0 44 chr1 192306193 192306284 -4889148 - MLT1A1 LTR MaLR -7 401 315 4 2052 1580 71 0 0 chr1 192306821 192307031 -4888401 - 7SLRNA srpRNA srpRNA -98 216 7 4 2052 309 319 116 42 chr1 192307123 192307313 -4888119 + MLT1A LTR MaLR 171 374 0 4 2052 387 270 257 0 chr1 192307453 192307601 -4887831 - ORR1E LTR MaLR -169 190 5 4 2052 509 200 0 11 chr1 192307850 192308032 -4887400 + GA-rich Low_complexity Low_complexity 1 180 0 4 2052 251 68 0 119 chr1 192308036 192308103 -4887329 + (CAGAGA)n Simple_repeat Simple_repeat 3 61 0 4 2052 660 169 0 0 chr1 192308103 192308281 -4887151 + GA-rich Low_complexity Low_complexity 2 179 0 4 2052 423 193 6 18 chr1 192308307 192308476 -4886956 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 5 2052 667 244 152 9 chr1 192308553 192308776 -4886656 - B4A SINE B4 -35 257 3 5 2052 188 175 125 0 chr1 192308795 192308835 -4886597 - L4 LINE RTE -1469 560 516 5 2052 181 316 0 0 chr1 192308802 192308840 -4886592 + L2b LINE L2 3243 3280 -95 5 2052 513 32 0 0 chr1 192309255 192309318 -4886114 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 5 2052 770 255 30 50 chr1 192309370 192309568 -4885864 - B3 SINE B2 -22 194 1 5 2052 582 302 107 66 chr1 192309569 192309916 -4885516 + MTEa LTR MaLR 2 362 -17 5 2052 499 254 40 86 chr1 192311524 192311722 -4883710 + Lx8 LINE L1 7024 7212 -261 5 2052 2617 148 5 0 chr1 192311722 192312126 -4883306 + MTC LTR MaLR 16 421 0 5 2052 395 303 23 8 chr1 192312142 192312275 -4883157 + Lx8 LINE L1 7224 7358 -115 5 2052 420 55 0 0 chr1 192313312 192313367 -4882065 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 2052 501 283 0 0 chr1 192313494 192313674 -4881758 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 2052 635 300 39 52 chr1 192313674 192313906 -4881526 - B4A SINE B4 0 292 64 5 2052 845 263 19 9 chr1 192313971 192314182 -4881250 - B4 SINE B4 -78 214 2 5 2052 481 317 27 21 chr1 192314623 192314810 -4880622 + MLT1H1 LTR MaLR 294 481 -74 5 2052 1136 123 103 94 chr1 192315747 192315971 -4879461 - URR1A DNA MER1_type 0 226 1 5 2052 332 275 110 0 chr1 192315992 192316083 -4879349 + MLT1L LTR MaLR 419 519 -91 5 2052 921 285 73 80 chr1 192316093 192316539 -4878893 - MTD LTR MaLR -31 388 1 5 2052 699 288 107 13 chr1 192316990 192317215 -4878217 - MTD LTR MaLR -141 278 33 5 2052 201 343 29 0 chr1 192317249 192317319 -4878113 - MIRc SINE MIR -158 110 39 5 2052 358 262 103 0 chr1 192320073 192320180 -4875252 - LFSINE_Vert SINE SINE -19 440 323 5 2052 234 310 59 10 chr1 192320330 192320416 -4875016 + Charlie9 DNA MER1_type 17 106 -2651 5 2052 380 71 18 0 chr1 192320416 192320472 -4874960 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 2052 234 310 59 10 chr1 192320472 192320486 -4874946 + Charlie9 DNA MER1_type 107 121 -2636 5 2052 852 270 17 30 chr1 192321131 192321364 -4874068 - ORR1D2 LTR MaLR 0 370 141 5 2052 233 194 15 88 chr1 192321378 192321446 -4873986 - RLTR28B LTR ERVL -52 429 367 5 2052 596 232 126 17 chr1 192321555 192321785 -4873647 - ORR1D2 LTR MaLR -124 250 1 5 2052 828 305 56 66 chr1 192322502 192322790 -4872642 + B4 SINE B4 6 290 -2 5 2052 752 172 0 22 chr1 192322820 192323004 -4872428 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 2052 476 245 10 10 chr1 192323620 192323719 -4871713 - PB1D10 SINE Alu -11 106 8 5 2052 315 361 18 24 chr1 192324007 192324177 -4871255 - MER5A DNA MER1_type -8 181 13 5 2052 391 223 229 8 chr1 192325587 192325709 -4869723 + RSINE1 SINE B4 2 150 -15 5 2052 333 0 0 0 chr1 192325937 192325974 -4869458 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 2052 715 335 230 48 chr1 192326048 192326595 -4868837 + MER115 DNA Tip100 45 691 -2 5 2052 605 312 78 120 chr1 192326722 192327079 -4868353 + ORR1E LTR MaLR 12 353 -6 5 2052 203 152 0 0 chr1 192327137 192327170 -4868262 + A-rich Low_complexity Low_complexity 4 36 0 5 2052 396 40 0 0 chr1 192327397 192327447 -4867985 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 2052 724 273 37 21 chr1 192327730 192327917 -4867515 - RMER30 DNA MER1_type -8 194 5 5 2052 5413 130 93 7 chr1 192327974 192328856 -4866576 + RMER17B LTR ERVK 1 958 0 5 2052 438 337 33 61 chr1 192329666 192329878 -4865554 + ID_B1 SINE B4 7 212 -12 5 2052 671 350 151 4 chr1 192331165 192331656 -4863776 + MER119 DNA MER1_type 21 583 0 5 2052 2442 70 3 87 chr1 192332417 192332774 -4862658 - ORR1A2 LTR MaLR 0 327 1 5 2052 21 0 0 0 chr1 192333245 192333266 -4862166 + GC_rich Low_complexity Low_complexity 1 21 0 5 2052 725 228 20 7 chr1 192333566 192333696 -4861736 + B1_Mur1 SINE Alu 2 134 -15 5 2052 194 0 39 0 chr1 192333696 192333722 -4861710 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 5 2052 725 228 20 7 chr1 192333722 192333737 -4861695 + B1_Mur1 SINE Alu 135 149 0 5 2052 1058 117 6 0 chr1 192334185 192334364 -4861068 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 2052 183 80 0 0 chr1 192334364 192334389 -4861043 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 2052 1314 87 44 0 chr1 192334392 192334575 -4860857 - B2_Mm2 SINE B2 -3 192 2 5 2052 499 100 44 0 chr1 192334740 192334830 -4860602 + (GGGA)n Simple_repeat Simple_repeat 2 95 0 5 2052 739 225 0 7 chr1 192335556 192335699 -4859733 + ID_B1 SINE B4 81 222 -2 5 2052 650 260 21 86 chr1 192335734 192335942 -4859490 + B4 SINE B4 2 201 -23 5 2052 476 0 0 33 chr1 192335942 192336003 -4859429 + (TAA)n Simple_repeat Simple_repeat 2 60 0 5 2052 347 308 50 108 chr1 192336003 192336016 -4859416 + ID_B1 SINE B4 202 210 -14 5 2052 327 319 44 15 chr1 192336256 192336392 -4859040 - ORR1E LTR MaLR -214 145 6 5 2052 261 265 143 73 chr1 192336392 192336546 -4858886 + PB1D7 SINE Alu 3 148 -1 5 2052 735 239 84 0 chr1 192336561 192336716 -4858716 + B3 SINE B2 28 195 -21 5 2052 626 147 17 12 chr1 192337587 192337759 -4857673 + (TCTG)n Simple_repeat Simple_repeat 2 174 0 5 2052 245 350 70 35 chr1 192338310 192338452 -4856980 - MIR3 SINE MIR -16 192 46 5 2052 226 121 0 0 chr1 192338554 192338587 -4856845 + MLT2B3 LTR ERVL 11 43 -511 5 2052 839 192 98 15 chr1 192338587 192338795 -4856637 + B3A SINE B2 2 210 -6 5 2052 772 277 91 65 chr1 192338810 192339169 -4856263 + MTEa LTR MaLR 10 379 0 5 2052 539 310 84 90 chr1 192339220 192339516 -4855916 + ORR1E LTR MaLR 18 314 -45 5 2052 558 0 0 0 chr1 192339516 192339578 -4855854 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 2052 539 310 84 90 chr1 192339578 192339625 -4855807 + ORR1E LTR MaLR 315 359 0 5 2052 405 295 189 20 chr1 192340034 192340283 -4855149 - MT2A LTR ERVL -12 521 231 5 2052 1273 230 62 31 chr1 192340339 192340694 -4854738 - ORR1D2 LTR MaLR -3 367 2 5 2052 249 315 27 0 chr1 192341679 192341752 -4853680 - ID4 SINE ID -8 75 1 5 2052 897 10 0 0 chr1 192342631 192342733 -4852699 + (TTC)n Simple_repeat Simple_repeat 1 102 0 5 2052 183 42 0 0 chr1 192342733 192342756 -4852676 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 2052 468 271 51 29 chr1 192342777 192342914 -4852518 + B1F SINE Alu 2 141 -8 5 2052 268 320 229 11 chr1 192343448 192343631 -4851801 - Charlie5 DNA MER1_type -50 2574 2352 5 2052 569 308 29 34 chr1 192344609 192344814 -4850618 - B4A SINE B4 -4 288 85 5 2052 2445 112 14 3 chr1 192344875 192345241 -4850191 - ORR1C1 LTR MaLR -8 370 1 5 2052 687 280 27 76 chr1 192345764 192345988 -4849444 + ID_B1 SINE B4 1 213 -11 5 2052 1210 50 0 27 chr1 192345988 192346172 -4849260 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 5 2052 366 23 0 0 chr1 192346172 192346215 -4849217 + (GGGA)n Simple_repeat Simple_repeat 1 43 0 5 2052 296 331 101 22 chr1 192346780 192347094 -4848338 + LTR16A LTR ERVL 1 402 -49 5 2052 217 222 0 22 chr1 192347836 192347882 -4847550 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 2052 562 177 17 22 chr1 192347884 192348063 -4847369 + (CATA)n Simple_repeat Simple_repeat 1 178 0 5 2052 399 204 100 22 chr1 192348089 192348179 -4847253 - URR1B DNA MER1_type -128 97 1 5 2052 342 0 0 0 chr1 192348423 192348461 -4846971 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 2052 628 262 10 28 chr1 192348649 192348850 -4846582 - B3 SINE B2 -1 197 1 5 2052 671 284 83 42 chr1 192348852 192349069 -4846363 - B4 SINE B4 -66 226 1 5 2052 713 204 0 9 chr1 192350940 192351173 -4844259 + GA-rich Low_complexity Low_complexity 1 230 0 5 2052 233 322 67 0 chr1 192352009 192352099 -4843333 + MER5A DNA MER1_type 66 161 -28 5 2052 242 321 28 93 chr1 192352189 192352405 -4843027 + L1M5 LINE L1 5536 5737 -442 5 2052 219 308 18 149 chr1 192353258 192353426 -4842006 - L2c LINE L2 -1 3386 3241 5 2052 586 170 45 36 chr1 192353445 192353555 -4841877 - PB1D7 SINE Alu -9 111 1 5 2052 1134 120 0 0 chr1 192353673 192353848 -4841584 + (GGA)n Simple_repeat Simple_repeat 3 177 0 5 2052 233 320 53 0 chr1 192354118 192354193 -4841239 + LTR16A1 LTR ERVL 218 296 -160 5 2052 291 321 0 0 chr1 192354239 192354320 -4841112 + LTR16A1 LTR ERVL 375 455 -1 5 2052 219 139 0 0 chr1 192355113 192355149 -4840283 + (T)n Simple_repeat Simple_repeat 1 36 0 5 2052 1301 68 0 6 chr1 192355386 192355564 -4839868 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 5 2052 680 310 14 0 chr1 192355667 192355880 -4839552 - ID_B1 SINE B4 -6 218 3 5 2052 200 167 40 40 chr1 192357319 192357369 -4838063 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 5 2052 611 254 27 159 chr1 192358895 192359153 -4836279 + ID_B1 SINE B4 1 224 0 5 2052 255 304 46 35 chr1 192360020 192360194 -4835238 + (CCCA)n Simple_repeat Simple_repeat 4 179 0 5 2052 253 270 32 0 chr1 192360497 192360560 -4834872 - MIRb SINE MIR -46 222 158 5 2052 1096 296 75 22 chr1 192360564 192360924 -4834508 - MTEa LTR MaLR 0 379 1 5 2052 273 256 128 0 chr1 192362690 192362776 -4832656 + MER81 DNA AcHobo 2 98 -16 5 2052 452 318 0 13 chr1 192363401 192363554 -4831878 + L1MEd LINE L1 5 155 -5964 5 2052 332 349 135 15 chr1 192363864 192364123 -4831309 + L1MEd LINE L1 552 841 -5278 5 2052 248 273 252 0 chr1 192364146 192364245 -4831187 + L1MEd LINE L1 897 1020 -5099 5 2052 361 365 79 0 chr1 192364313 192364491 -4830941 + L1MEd LINE L1 1023 1214 -4905 5 2052 408 201 11 49 chr1 192364567 192364750 -4830682 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 5 2052 279 279 13 0 chr1 192364750 192364829 -4830603 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 2052 307 306 95 20 chr1 192364983 192365130 -4830302 - HAL1-3A_ME LINE L1 -726 2132 1975 5 2052 267 238 12 30 chr1 192365144 192365309 -4830123 + (TATG)n Simple_repeat Simple_repeat 1 162 0 5 2052 413 278 105 0 chr1 192365361 192365494 -4829938 - L1M5 LINE L1 -972 5472 5326 6 2052 230 277 41 41 chr1 192365923 192366021 -4829411 + IAPLTR1_Mm LTR ERVK 185 282 -85 6 2052 298 318 158 25 chr1 192366001 192366159 -4829273 - LTR50 LTR ERVL -605 190 12 6 2052 5860 117 3 26 chr1 192366544 192367649 -4827783 - L1_Mm LINE L1 0 5883 4885 6 2052 1485 140 32 12 chr1 192367668 192367914 -4827518 + RMER6A LTR ERVK 506 756 0 6 2052 262 154 62 25 chr1 192367914 192367994 -4827438 + L1MEc LINE L1 2300 2382 -4018 6 2052 306 283 58 8 chr1 192368056 192368177 -4827255 + B3 SINE B2 85 211 -5 6 2052 24 53 0 0 chr1 192368376 192368414 -4827018 + AT_rich Low_complexity Low_complexity 1 38 0 6 2052 239 289 26 13 chr1 192368918 192368995 -4826437 - ID SINE ID -143 81 4 6 2052 2716 162 229 16 chr1 192369525 192370133 -4825299 + RMER19A LTR ERVK 1 737 0 6 2052 431 305 34 0 chr1 192370359 192370536 -4824896 - L1MA4 LINE L1 -369 5931 5749 6 2052 328 365 70 24 chr1 192370543 192370756 -4824676 + LTR40a LTR ERVL 74 296 -169 6 2052 416 334 116 16 chr1 192370757 192371053 -4824379 - MLT1E3 LTR MaLR 0 654 298 6 2052 549 253 85 75 chr1 192371130 192371283 -4824149 - B4 SINE B4 0 292 136 6 2052 243 0 0 0 chr1 192371283 192371310 -4824122 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 2052 549 253 85 75 chr1 192371310 192371357 -4824075 - B4 SINE B4 -157 135 90 6 2052 447 265 90 32 chr1 192371570 192371726 -4823706 + LTR40a LTR ERVL 339 503 -16 6 2052 364 228 81 120 chr1 192371732 192371941 -4823491 + MER33 DNA MER1_type 87 287 -37 6 2052 342 0 0 0 chr1 192372634 192372672 -4822760 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 2052 198 0 0 0 chr1 192372672 192372693 -4822739 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 2052 287 340 7 20 chr1 192372713 192372863 -4822569 + (TATG)n Simple_repeat Simple_repeat 1 148 0 6 2052 244 196 51 25 chr1 192372961 192373118 -4822314 + (TATG)n Simple_repeat Simple_repeat 3 163 0 6 2052 239 270 59 67 chr1 192373558 192373677 -4821755 - MER115 DNA Tip100 -172 521 404 6 2052 233 200 22 0 chr1 192373677 192373722 -4821710 + C-rich Low_complexity Low_complexity 4 49 0 6 2052 431 373 111 34 chr1 192373723 192374101 -4821331 - MER115 DNA Tip100 -257 436 30 6 2052 887 205 12 25 chr1 192374739 192374899 -4820533 - RSINE1 SINE B4 -6 159 2 6 2052 1231 68 0 0 chr1 192375267 192375414 -4820018 - B1_Mus1 SINE Alu 0 148 2 6 2052 303 337 65 33 chr1 192376354 192376569 -4818863 + RMER15 LTR ERVL 343 564 -11 6 2052 231 114 0 0 chr1 192376648 192376683 -4818749 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 2052 1100 101 6 0 chr1 192378207 192378385 -4817047 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 2052 2331 50 53 10 chr1 192378469 192378770 -4816662 - L1Md_F2 LINE L1 -2 6580 6267 6 2052 1019 266 64 62 chr1 192378894 192379251 -4816181 - ORR1E LTR MaLR -1 358 1 6 2052 283 261 64 84 chr1 192380023 192380208 -4815224 + ORR1E LTR MaLR 201 376 -3 6 2052 447 306 28 70 chr1 192380368 192380577 -4814855 + B4A SINE B4 90 292 0 6 2052 3240 58 0 12 chr1 192380716 192381117 -4814315 - MTA_Mm LTR MaLR 0 396 1 6 2052 237 328 49 8 chr1 192381122 192381245 -4814187 + L1MC3 LINE L1 7258 7385 -400 6 2052 1022 251 209 3 chr1 192381822 192381922 -4813510 - Lx8 LINE L1 -56 7417 7287 6 2052 456 19 0 0 chr1 192381922 192381975 -4813457 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 2052 1022 251 209 3 chr1 192381975 192382262 -4813170 - Lx8 LINE L1 -187 7286 6951 6 2052 1755 209 100 5 chr1 192382264 192382635 -4812797 - MTD LTR MaLR -11 408 3 6 2052 1413 271 5 35 chr1 192382635 192383040 -4812392 - Lx8 LINE L1 -510 6963 6571 6 2052 283 273 0 15 chr1 192383672 192383739 -4811693 - RSINE1 SINE B4 -99 66 1 6 2052 429 278 52 0 chr1 192384569 192384666 -4810766 + B4A SINE B4 2 103 -189 6 2052 585 258 147 0 chr1 192384723 192384886 -4810546 + B4A SINE B4 86 272 -20 6 2052 282 246 0 0 chr1 192385134 192385199 -4810233 + ID2 SINE ID 15 79 -4 6 2052 288 0 0 0 chr1 192385489 192385521 -4809911 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 2052 181 243 0 0 chr1 192386843 192386880 -4808552 + L4 LINE RTE 1783 1819 -210 6 2052 484 210 0 12 chr1 192387557 192387726 -4807706 + (TG)n Simple_repeat Simple_repeat 1 167 0 6 2052 334 269 300 48 chr1 192387726 192387956 -4807476 - B4A SINE B4 0 292 5 6 2052 210 178 22 22 chr1 192387998 192388044 -4807388 + GA-rich Low_complexity Low_complexity 4 49 0 6 2052 484 342 26 16 chr1 192388328 192388521 -4806911 - MER117 DNA MER1_type -1 196 2 6 2052 336 24 0 0 chr1 192389470 192389511 -4805921 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 2052 198 209 0 0 chr1 192389519 192389562 -4805870 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 2052 486 75 0 0 chr1 192389562 192389629 -4805803 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 2052 440 331 65 57 chr1 192389642 192389921 -4805511 - B4 SINE B4 -11 281 1 6 2052 405 0 0 0 chr1 192390015 192390060 -4805372 + (CCCCAG)n Simple_repeat Simple_repeat 5 49 0 6 2052 921 286 89 34 chr1 192392015 192392341 -4803091 - ORR1E LTR MaLR -15 344 1 6 2052 679 93 4 61 chr1 192392480 192392741 -4802691 + (TTGG)n Simple_repeat Simple_repeat 1 245 0 6 2052 231 23 68 23 chr1 192392947 192392991 -4802441 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 6 2052 207 0 0 0 chr1 192392998 192393021 -4802411 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 6 2052 22 0 0 0 chr1 192393418 192393440 -4801992 + GC_rich Low_complexity Low_complexity 1 22 0 6 2052 1275 246 63 18 chr1 192393688 192394019 -4801413 + ORR1E LTR MaLR 9 354 -5 6 2052 243 231 47 82 chr1 192395187 192395272 -4800160 - ID4_ SINE ID -1 82 1 6 2052 270 0 0 0 chr1 192395300 192395330 -4800102 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 2052 1067 260 54 11 chr1 192395339 192395619 -4799813 - B4 SINE B4 0 292 1 6 2052 418 327 42 0 chr1 192395892 192396057 -4799375 - Tigger1 DNA MER2_type -1739 679 508 6 2052 382 225 22 23 chr1 192396069 192396176 -4799256 - PB1D7 SINE Alu -21 128 26 6 2052 180 0 0 0 chr1 192396281 192396301 -4799131 + (C)n Simple_repeat Simple_repeat 1 20 0 6 2052 345 286 214 16 chr1 192398173 192398566 -4796866 - L2a LINE L2 -107 3319 2831 6 2052 549 288 14 7 chr1 192398858 192398998 -4796434 - B1F SINE Alu -8 141 1 6 2052 373 276 19 9 chr1 192399161 192399267 -4796165 + Lx8 LINE L1 6841 6947 -526 6 2052 660 248 3 0 chr1 192399267 192399558 -4795874 + (CA)n Simple_repeat Simple_repeat 1 291 0 6 2052 501 199 11 6 chr1 192399573 192399750 -4795682 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 2052 1074 271 99 48 chr1 192399750 192400226 -4795206 + Lx8 LINE L1 6967 7466 -7 6 2052 365 278 97 62 chr1 192400561 192400787 -4794645 - RMER12 LTR ERVK -319 1003 770 6 2052 2986 32 6 0 chr1 192401135 192401479 -4793953 + ORR1A1 LTR MaLR 1 346 0 6 2052 2184 196 33 0 chr1 192401752 192402150 -4793282 - MTD LTR MaLR -8 411 1 6 2052 250 182 75 15 chr1 192402175 192402242 -4793190 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 6 2052 206 135 27 0 chr1 192402914 192402951 -4792481 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 2052 770 244 137 30 chr1 192402957 192403219 -4792213 - B4A SINE B4 -2 290 1 6 2052 416 282 96 82 chr1 192403818 192403953 -4791479 - RSINE1 SINE B4 -25 140 4 6 2052 227 328 111 69 chr1 192404218 192404362 -4791070 - MER2 DNA MER2_type -12 333 184 6 2052 236 253 21 0 chr1 192404861 192404956 -4790476 + (CATA)n Simple_repeat Simple_repeat 4 100 0 6 2052 289 259 14 0 chr1 192406797 192406944 -4788488 + CT-rich Low_complexity Low_complexity 2 150 0 6 2052 396 0 0 0 chr1 192407041 192407085 -4788347 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 2052 5026 85 4 12 chr1 192408065 192408743 -4786689 - L1_Mus4 LINE L1 -5 6631 5959 6 2052 408 40 0 0 chr1 192410087 192410137 -4785295 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 2052 391 336 158 40 chr1 192410390 192410718 -4784714 + HAL1 LINE L1 1397 1763 -744 6 2052 22 87 0 12 chr1 192411032 192411078 -4784354 + AT_rich Low_complexity Low_complexity 1 46 0 6 2052 875 234 29 19 chr1 192411078 192411287 -4784145 - B3 SINE B2 -5 211 1 6 2052 22 87 0 12 chr1 192411287 192411322 -4784110 + AT_rich Low_complexity Low_complexity 1 35 0 6 2052 1039 228 21 46 chr1 192411535 192411774 -4783658 - Lx8 LINE L1 -509 6964 6732 6 2052 363 315 221 32 chr1 192411767 192412016 -4783416 + Lx8 LINE L1 6973 7268 -205 6 2052 460 284 40 50 chr1 192412221 192412421 -4783011 + B3A SINE B2 1 198 0 6 2052 799 298 78 41 chr1 192412930 192413444 -4781988 - MT2A LTR ERVL 0 533 1 6 2053 361 257 169 27 chr1 192413791 192413939 -4781493 + B3A SINE B2 30 198 0 6 2053 343 219 92 37 chr1 192417003 192417112 -4778320 - PB1D10 SINE Alu -1 116 2 6 2053 387 349 57 17 chr1 192418871 192419046 -4776386 + LTR16C LTR ERVL 194 375 -114 6 2053 1865 132 32 159 chr1 192419084 192419517 -4775915 + ORR1C1 LTR MaLR 1 378 0 6 2053 766 281 84 64 chr1 192419555 192419901 -4775531 - MTE2a LTR MaLR -26 353 1 6 2053 288 318 95 91 chr1 192420151 192420393 -4775039 + MLT1F2 LTR MaLR 316 558 -2 6 2053 350 322 143 48 chr1 192421294 192421545 -4773887 + B4A SINE B4 2 276 -16 6 2053 344 325 122 31 chr1 192421747 192422001 -4773431 + L1M5 LINE L1 5547 5823 -417 6 2053 259 282 53 53 chr1 192422035 192422110 -4773322 + B3A SINE B2 5 79 -119 6 2053 807 236 0 7 chr1 192422043 192422184 -4773248 + RSINE1 SINE B4 14 153 -12 6 2053 24 0 0 0 chr1 192422311 192422335 -4773097 + AT_rich Low_complexity Low_complexity 1 24 0 6 2053 436 314 128 39 chr1 192422377 192422739 -4772693 + L1M4 LINE L1 2382 2774 -3372 6 2053 1765 200 24 47 chr1 192422817 192423200 -4772232 - ORR1D1 LTR MaLR 0 374 1 6 2053 1029 249 157 0 chr1 192424755 192425036 -4770396 + MTE2b LTR MaLR 1 325 -54 6 2053 260 279 15 0 chr1 192425035 192425103 -4770329 + B4 SINE B4 114 182 -110 7 2053 290 254 9 0 chr1 192425108 192425218 -4770214 + (TG)n Simple_repeat Simple_repeat 1 111 0 7 2053 563 224 6 0 chr1 192425229 192425408 -4770024 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 2053 262 154 60 30 chr1 192427560 192427627 -4767805 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 7 2053 23 0 0 0 chr1 192427628 192427651 -4767781 + AT_rich Low_complexity Low_complexity 1 23 0 7 2053 1159 236 88 23 chr1 192428367 192428675 -4766757 - MTEa LTR MaLR -14 365 38 7 2053 240 261 43 0 chr1 192429258 192429327 -4766105 + L1MC5 LINE L1 6699 6770 -1191 7 2053 1438 59 0 5 chr1 192429327 192429514 -4765918 + L1_Mus1 LINE L1 6382 6567 0 7 2053 1737 269 74 36 chr1 192429689 192430348 -4765084 + Lx9 LINE L1 6933 7616 -28 7 2053 386 307 106 42 chr1 192430558 192431031 -4764401 + L1MC5 LINE L1 6955 7457 -504 7 2053 480 154 30 30 chr1 192431065 192431199 -4764233 + G-rich Low_complexity Low_complexity 1 134 0 7 2053 1230 92 0 0 chr1 192431199 192431373 -4764059 + (GAGAA)n Simple_repeat Simple_repeat 3 176 0 7 2053 1112 101 6 0 chr1 192431379 192431548 -4763884 + (GAA)n Simple_repeat Simple_repeat 1 170 0 7 2053 239 252 83 46 chr1 192431644 192431752 -4763680 + L1MC5 LINE L1 7600 7711 -250 7 2053 793 236 0 7 chr1 192431753 192431902 -4763530 - B1_Mur1 SINE Alu -1 148 1 7 2053 772 221 21 176 chr1 192433917 192434140 -4761292 - B3 SINE B2 -15 201 1 7 2053 261 270 0 16 chr1 192434140 192434170 -4761262 - PB1D10 SINE Alu -76 41 13 7 2053 1086 55 30 0 chr1 192434233 192434439 -4760993 + (TC)n Simple_repeat Simple_repeat 1 212 0 7 2053 316 321 85 54 chr1 192435248 192435472 -4759960 + L1M4c LINE L1 1072 1302 -5237 7 2053 1229 54 0 0 chr1 192435504 192435652 -4759780 + B1_Mus1 SINE Alu 1 148 0 7 2053 642 300 79 32 chr1 192435730 192436073 -4759359 - ORR1E LTR MaLR -5 374 2 7 2053 261 347 52 0 chr1 192436119 192436292 -4759140 + L1_Mur3 LINE L1 1517 1698 -4182 7 2053 238 273 77 83 chr1 192436381 192436537 -4758895 + L1M4c LINE L1 1798 1952 -4681 7 2053 252 59 0 0 chr1 192436596 192436630 -4758802 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 2053 981 293 77 76 chr1 192436690 192436996 -4758436 + L1M2 LINE L1 2070 2395 -3748 7 2053 3081 68 2 10 chr1 192436996 192437398 -4758034 - L1Md_F2 LINE L1 0 6582 6184 7 2053 981 287 75 80 chr1 192437398 192437879 -4757553 + L1M2 LINE L1 2396 2879 -3264 7 2053 449 139 333 87 chr1 192437879 192438029 -4757403 - B2_Mm2 SINE B2 -8 187 1 7 2053 981 287 75 80 chr1 192438029 192438111 -4757321 + L1M2 LINE L1 2880 2946 -3197 7 2053 9152 10 0 0 chr1 192438141 192439561 -4755871 - L1Md_T LINE L1 0 6582 5163 7 2053 13336 20 0 0 chr1 192439561 192441090 -4754342 + L1Md_T LINE L1 3637 5165 -718 7 2053 5359 148 27 22 chr1 192441090 192441970 -4753462 - RMER19B LTR ERVK -17 885 1 7 2053 674 216 53 26 chr1 192441970 192442198 -4753234 + L1M2 LINE L1 2941 3174 -2969 7 2053 564 340 0 13 chr1 192442201 192442359 -4753073 + RSINE1 SINE B4 1 156 -9 7 2053 183 42 0 0 chr1 192442360 192442384 -4753048 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 7 2053 267 163 31 20 chr1 192442387 192442486 -4752946 + L1M4c LINE L1 3518 3651 -2886 7 2053 360 64 0 0 chr1 192442487 192442534 -4752898 + (TATG)n Simple_repeat Simple_repeat 2 48 0 7 2053 1563 219 64 12 chr1 192442576 192442918 -4752514 + ORR1D2 LTR MaLR 1 360 -10 7 2053 260 327 23 91 chr1 192442768 192442943 -4752489 + MER74A LTR ERVL 394 556 -2 7 2053 1426 258 70 12 chr1 192442953 192443470 -4751962 + L1M2 LINE L1 3366 3912 -2231 7 2053 5223 124 3 5 chr1 192443501 192444239 -4751193 - RMER19A LTR ERVK 0 737 2 7 2053 794 282 149 33 chr1 192444240 192444849 -4750583 + L1M2 LINE L1 4586 5265 -878 7 2053 470 335 73 43 chr1 192444998 192445435 -4749997 + L1M2 LINE L1 5336 5785 -515 7 2053 394 273 0 0 chr1 192446426 192446510 -4748922 - B4A SINE B4 -4 288 205 7 2053 1547 196 13 32 chr1 192446510 192446821 -4748611 - MTC LTR MaLR 0 421 117 7 2053 873 59 3 26 chr1 192446834 192446975 -4748457 + B1_Mm SINE Alu 1 139 -10 7 2053 402 128 169 60 chr1 192446944 192446981 -4748451 - MTC LTR MaLR -324 95 62 7 2053 982 24 16 0 chr1 192446981 192447106 -4748326 + (TTC)n Simple_repeat Simple_repeat 3 129 0 7 2053 1297 103 17 0 chr1 192447106 192447280 -4748152 - B2_Mm2 SINE B2 -16 179 3 7 2053 402 128 169 60 chr1 192447280 192447324 -4748108 - MTC LTR MaLR -358 61 5 7 2053 558 333 52 41 chr1 192447327 192447521 -4747911 - B4A SINE B4 -83 209 14 7 2053 312 70 0 0 chr1 192447587 192447630 -4747802 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 2053 180 0 0 0 chr1 192447632 192447652 -4747780 + (CATG)n Simple_repeat Simple_repeat 1 20 0 7 2053 1049 164 44 25 chr1 192448656 192448960 -4746472 + RMER17C LTR ERVK 1 410 0 7 2053 585 340 109 34 chr1 192449107 192449372 -4746060 - RCHARR1 DNA MER1_type -682 292 8 7 2053 246 270 89 9 chr1 192449553 192449665 -4745767 + LTR16A LTR ERVL 331 451 0 7 2053 304 273 0 0 chr1 192449731 192449797 -4745635 - ID_B1 SINE B4 -70 154 89 7 2053 323 266 0 0 chr1 192449943 192450007 -4745425 - ID4_ SINE ID 0 83 20 7 2053 376 309 123 14 chr1 192450274 192450599 -4744833 + L1MD LINE L1 3545 3910 -2236 7 2053 612 325 32 32 chr1 192450698 192450914 -4744518 - MIR SINE MIR -11 251 36 7 2053 1285 194 0 9 chr1 192451003 192451221 -4744211 - B3 SINE B2 0 216 1 7 2053 2055 183 30 0 chr1 192451302 192451669 -4743763 + ORR1C1 LTR MaLR 1 378 0 7 2053 295 318 45 9 chr1 192451941 192452052 -4743380 + MTEb LTR MaLR 264 378 -1 7 2053 526 268 12 52 chr1 192452510 192452683 -4742749 + B3 SINE B2 38 203 -13 7 2053 410 294 0 7 chr1 192452683 192452827 -4742605 + (CA)n Simple_repeat Simple_repeat 1 143 0 7 2053 3646 13 0 0 chr1 192453273 192453669 -4741763 - MTA_Mm LTR MaLR 0 396 1 7 2053 807 96 36 0 chr1 192454079 192454246 -4741186 + (CA)n Simple_repeat Simple_repeat 1 173 0 7 2053 1358 81 32 0 chr1 192454472 192454658 -4740774 - B2_Mm2 SINE B2 -2 193 2 7 2053 1296 248 40 50 chr1 192454660 192455038 -4740394 + MTEb LTR MaLR 6 379 0 7 2053 195 250 0 0 chr1 192455319 192455363 -4740069 - L3 LINE CR1 -2327 2162 2119 7 2053 443 216 0 9 chr1 192456783 192456834 -4738598 + polypurine Low_complexity Low_complexity 5 55 0 7 2053 954 136 0 0 chr1 192456834 192456989 -4738443 + (GAA)n Simple_repeat Simple_repeat 3 157 0 7 2053 443 216 0 9 chr1 192456989 192457049 -4738383 + polypurine Low_complexity Low_complexity 56 115 0 7 2053 364 330 10 0 chr1 192457096 192457199 -4738233 - MT2A LTR ERVL -162 371 268 7 2053 509 305 63 16 chr1 192457223 192457245 -4738187 - MT2A LTR ERVL -334 199 1 7 2053 573 242 119 18 chr1 192457245 192457413 -4738019 - MTEa LTR MaLR -194 185 1 7 2053 511 336 142 0 chr1 192458767 192459035 -4736397 + MLT1B LTR MaLR 75 380 -10 7 2053 401 335 89 42 chr1 192459943 192460202 -4735230 - MER5C DNA MER1_type -7 306 36 7 2053 358 250 53 0 chr1 192460308 192460384 -4735048 + RSINE1 SINE B4 81 160 -5 7 2053 248 152 0 0 chr1 192460414 192460460 -4734972 + MER33 DNA MER1_type 120 165 -159 7 2053 513 264 47 70 chr1 192460465 192460636 -4734796 + MTE2a LTR MaLR 1 167 -212 7 2053 703 269 0 0 chr1 192460683 192460824 -4734608 - B1F SINE Alu 0 149 9 7 2053 554 281 0 70 chr1 192460824 192460840 -4734592 - ID_B1 SINE B4 0 224 79 7 2053 371 269 0 53 chr1 192460863 192460977 -4734455 + PB1D10 SINE Alu 10 117 0 7 2053 356 256 13 13 chr1 192460988 192461067 -4734365 + ID4 SINE ID 5 83 0 7 2053 537 192 22 9 chr1 192461294 192461520 -4733912 + (CA)n Simple_repeat Simple_repeat 1 228 0 7 2053 667 164 29 0 chr1 192461545 192461716 -4733716 + (CA)n Simple_repeat Simple_repeat 2 177 0 7 2053 403 201 28 17 chr1 192461752 192461929 -4733503 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 2053 378 0 0 0 chr1 192461939 192461981 -4733451 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 2053 2624 271 100 27 chr1 192462324 192463085 -4732347 + RCHARR1 DNA MER1_type 3 823 -151 7 2053 315 0 0 0 chr1 192463085 192463120 -4732312 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 2053 2624 271 100 27 chr1 192463120 192463258 -4732174 + RCHARR1 DNA MER1_type 824 968 -6 7 2053 189 0 0 0 chr1 192463475 192463496 -4731936 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 7 2053 225 218 200 0 chr1 192464783 192464838 -4730594 - ID4_ SINE ID -4 79 14 7 2053 336 240 52 37 chr1 192465041 192465175 -4730257 + L1MEc LINE L1 162 297 -6103 7 2053 230 171 12 157 chr1 192465182 192465265 -4730167 + RLTR25B LTR ERVK 426 496 -532 7 2053 398 173 74 0 chr1 192465207 192465288 -4730144 + B1F2 SINE Alu 39 125 -24 7 2053 378 0 0 0 chr1 192465288 192465330 -4730102 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 2053 298 273 168 18 chr1 192465393 192465497 -4729935 + L1MEc LINE L1 734 837 -5563 7 2053 490 241 8 33 chr1 192465497 192465617 -4729815 + PB1D10 SINE Alu 1 117 0 7 2053 298 273 168 18 chr1 192465617 192465892 -4729540 + L1MEc LINE L1 838 1169 -5231 7 2053 854 271 163 32 chr1 192465906 192466249 -4729183 - MTD LTR MaLR -14 405 18 7 2053 716 212 7 33 chr1 192467081 192467232 -4728200 - B1_Mur2 SINE Alu -1 148 2 7 2053 676 224 5 109 chr1 192467280 192467481 -4727951 - B3A SINE B2 -16 182 3 7 2053 423 0 0 0 chr1 192467700 192467747 -4727685 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 2053 449 180 8 0 chr1 192467747 192467875 -4727557 + (TG)n Simple_repeat Simple_repeat 1 129 0 7 2053 630 261 174 24 chr1 192467984 192468196 -4727236 - B4 SINE B4 0 292 49 7 2053 182 293 48 12 chr1 192468208 192468291 -4727141 + MIR3 SINE MIR 89 174 -34 7 2053 690 142 0 9 chr1 192469385 192469499 -4725933 + L1VL1 LINE L1 50 162 -6260 7 2053 32288 142 50 37 chr1 192469499 192470516 -4724916 + L1Md_F2 LINE L1 244 1269 -5369 7 2053 275 65 22 0 chr1 192470516 192470562 -4724870 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 2053 32288 62 2 3 chr1 192470562 192474887 -4720545 + L1Md_F2 LINE L1 1270 5585 -298 7 2053 7885 56 15 2 chr1 192474887 192475869 -4719563 + L1Md_F2 LINE L1 5587 6581 -1 7 2053 406 275 34 55 chr1 192475892 192476038 -4719394 + B4A SINE B4 1 143 -149 7 2053 844 277 51 5 chr1 192477372 192477605 -4717827 + ID_B1 SINE B4 11 249 -43 7 2053 230 103 86 171 chr1 192479652 192479722 -4715710 - Tigger1 DNA MER2_type -1010 1408 1345 7 2053 426 354 85 16 chr1 192480550 192480797 -4714635 - RMER15 LTR ERVL -13 562 299 7 2053 2659 105 18 2 chr1 192480830 192481223 -4714209 - MTC LTR MaLR -22 399 1 7 2053 393 127 48 10 chr1 192481338 192481441 -4713991 + CT-rich Low_complexity Low_complexity 1 107 0 7 2053 660 262 18 36 chr1 192482023 192482189 -4713243 + RSINE1 SINE B4 3 165 0 7 2053 196 266 241 26 chr1 192483189 192483305 -4712127 + MIRb SINE MIR 115 255 -13 7 2053 213 39 0 0 chr1 192487918 192487944 -4707488 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 2053 233 333 34 51 chr1 192490666 192490783 -4704649 + LTR16E1 LTR ERVL 424 538 0 8 2053 477 0 0 0 chr1 192490892 192490945 -4704487 + (TAA)n Simple_repeat Simple_repeat 3 55 0 8 2053 258 254 48 0 chr1 192490980 192491043 -4704389 - ID4_ SINE ID -15 68 3 8 2053 538 257 0 0 chr1 192491050 192491155 -4704277 - PB1D10 SINE Alu -10 107 3 8 2053 296 228 0 0 chr1 192492520 192492577 -4702855 + MIRc SINE MIR 106 162 -106 8 2053 534 269 0 0 chr1 192493740 192493907 -4701525 + (CA)n Simple_repeat Simple_repeat 2 168 0 8 2053 397 319 62 74 chr1 192494693 192494869 -4700563 + B4A SINE B4 43 216 -76 8 2053 219 242 0 0 chr1 192494869 192494931 -4700501 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 2053 389 286 0 6 chr1 192494942 192495118 -4700314 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 2053 470 209 7 0 chr1 192495578 192495717 -4699715 + (TG)n Simple_repeat Simple_repeat 1 140 0 8 2053 276 309 43 60 chr1 192496826 192496943 -4698489 - MIRb SINE MIR -38 230 116 8 2053 883 274 43 97 chr1 192497259 192497688 -4697744 + MTEb LTR MaLR 3 400 -19 8 2053 405 0 0 0 chr1 192497688 192497733 -4697699 + (TAA)n Simple_repeat Simple_repeat 3 47 0 8 2053 275 330 32 56 chr1 192497804 192497929 -4697503 + MER63A DNA AcHobo 25 146 -64 8 2053 182 297 102 65 chr1 192498211 192498319 -4697113 - MIRb SINE MIR -144 124 13 8 2053 295 320 82 0 chr1 192500037 192500134 -4695298 - MER63B DNA AcHobo -20 416 312 1 2053 859 291 80 55 chr1 192500484 192500811 -4694621 + MTE2b LTR MaLR 6 340 -39 2 2053 540 224 0 7 chr1 192501018 192501328 -4694104 + (CA)n Simple_repeat Simple_repeat 1 307 0 3 2053 530 190 8 0 chr1 192501361 192501482 -4693950 + (CA)n Simple_repeat Simple_repeat 2 123 0 3 2053 293 364 42 11 chr1 192502660 192502849 -4692583 + MER2 DNA MER2_type 66 260 -85 4 2053 367 282 87 24 chr1 192502810 192502937 -4692495 + ID_B1 SINE B4 82 216 -8 5 2053 241 250 0 0 chr1 192503638 192503686 -4691746 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 2053 272 296 158 11 chr1 192503940 192504140 -4691292 - MIR SINE MIR -25 243 30 7 2053 206 260 0 0 chr1 192504594 192504644 -4690788 + A-rich Low_complexity Low_complexity 1 50 0 8 2053 194 33 67 0 chr1 192508490 192508520 -4686912 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 9 2053 1293 79 39 0 chr1 192508547 192508725 -4686707 - B2_Mm1a SINE B2 -8 185 1 1 2053 277 293 130 73 chr1 192509381 192509418 -4686014 - MT2B2 LTR ERVL -260 324 228 1 2053 525 219 3 4 chr1 192509418 192509526 -4685906 - PB1D10 SINE Alu -41 108 2 1 2053 277 293 130 73 chr1 192509526 192509558 -4685874 - MT2B2 LTR ERVL -260 227 138 1 2053 2251 130 88 6 chr1 192509714 192510078 -4685354 + ORR1B1 LTR MaLR 1 394 0 1 2053 625 285 29 41 chr1 192510079 192510251 -4685181 + MIR SINE MIR 15 184 -78 1 2053 657 275 72 21 chr1 192510396 192510589 -4684843 + ID_B1 SINE B4 1 203 -21 1 2053 328 266 202 44 chr1 192511169 192511283 -4684149 - MTEb LTR MaLR -227 152 21 1 2053 351 0 0 0 chr1 192511592 192511631 -4683801 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 2053 6391 122 3 27 chr1 192511801 192512836 -4682596 - Lx LINE L1 -2 6652 5643 1 2053 1025 166 11 6 chr1 192513047 192513223 -4682209 + URR1B DNA MER1_type 49 225 0 1 2053 213 39 0 0 chr1 192513692 192513718 -4681714 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2 2053 333 0 0 0 chr1 192516012 192516049 -4679383 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 2053 595 312 95 0 chr1 192516149 192516370 -4679062 - MLT1C LTR MaLR -16 451 210 2 2053 308 333 0 16 chr1 192516376 192516501 -4678931 + (TATATG)n Simple_repeat Simple_repeat 3 125 0 2 2053 215 266 21 14 chr1 192516503 192516644 -4678788 + (TATG)n Simple_repeat Simple_repeat 3 144 0 2 2053 401 225 116 123 chr1 192516678 192516909 -4678523 - ORR1E LTR MaLR -68 302 52 2 2053 210 303 143 22 chr1 192517017 192517108 -4678324 - MIRb SINE MIR -70 198 97 2 2053 213 289 71 12 chr1 192517670 192517754 -4677678 - MIR SINE MIR -77 185 97 2 2053 834 274 123 7 chr1 192517970 192518241 -4677191 + B4 SINE B4 1 291 -1 2 2053 368 242 108 127 chr1 192519194 192519444 -4675988 + L1MEc LINE L1 3257 3475 -2841 2 2053 414 0 0 0 chr1 192519969 192520015 -4675417 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 2053 423 273 57 64 chr1 192520022 192520144 -4675288 - B3A SINE B2 -38 160 40 3 2053 1699 180 81 36 chr1 192520144 192520502 -4674930 + ORR1D1 LTR MaLR 1 374 0 3 2053 247 94 0 0 chr1 192520503 192520535 -4674897 - B3A SINE B2 -157 41 10 3 2053 444 86 0 0 chr1 192520819 192520889 -4674543 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 2053 356 198 259 9 chr1 192521126 192521238 -4674194 - RSINE1 SINE B4 -23 142 3 3 2053 3215 61 2 2 chr1 192521640 192522036 -4673396 + MTA_Mm LTR MaLR 1 396 0 3 2053 396 260 83 0 chr1 192523223 192523319 -4672113 + PB1D9 SINE Alu 8 111 -9 3 2053 303 250 28 0 chr1 192523319 192523391 -4672041 + ID4_ SINE ID 1 74 -9 3 2053 449 255 13 36 chr1 192523670 192523793 -4671639 + ID_B1 SINE B4 5 124 -168 3 2053 281 281 106 30 chr1 192523861 192524059 -4671373 + L1MA4 LINE L1 5834 6046 -254 4 2053 1410 274 30 32 chr1 192524269 192524671 -4670761 - MTE2a LTR MaLR -13 406 3 4 2053 438 282 122 17 chr1 192524732 192524912 -4670520 + MER58A DNA MER1_type 26 224 0 4 2053 325 281 37 104 chr1 192525814 192525826 -4669606 - MTEb LTR MaLR 0 379 368 4 2053 2653 87 93 0 chr1 192525826 192526192 -4669240 + MTB LTR MaLR 1 400 0 4 2053 325 281 37 104 chr1 192526192 192526314 -4669118 - MTEb LTR MaLR -12 367 254 4 2053 2025 184 11 108 chr1 192526384 192526848 -4668584 + MTD LTR MaLR 1 419 0 4 2053 369 0 0 0 chr1 192526868 192526909 -4668523 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 2053 22 35 0 0 chr1 192527098 192527127 -4668305 + AT_rich Low_complexity Low_complexity 1 29 0 4 2053 345 62 0 0 chr1 192527170 192527218 -4668214 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 2053 497 160 0 9 chr1 192527393 192527500 -4667932 + GA-rich Low_complexity Low_complexity 1 106 0 4 2053 265 259 89 89 chr1 192527532 192527543 -4667889 + YREP_Mm Unknown Unknown 174 184 -1628 5 2053 397 50 16 16 chr1 192527543 192527604 -4667828 + (TGG)n Simple_repeat Simple_repeat 1 61 0 5 2053 265 259 89 89 chr1 192527604 192527715 -4667717 + YREP_Mm Unknown Unknown 185 295 -1517 5 2053 456 306 9 0 chr1 192527606 192527717 -4667715 - ID_B1 SINE B4 -13 211 100 5 2053 207 0 0 0 chr1 192527728 192527751 -4667681 + (T)n Simple_repeat Simple_repeat 1 23 0 5 2053 331 254 16 8 chr1 192528245 192528372 -4667060 + (CATATA)n Simple_repeat Simple_repeat 3 130 0 5 2053 606 199 4 28 chr1 192528349 192528604 -4666828 + (CATA)n Simple_repeat Simple_repeat 1 248 0 5 2053 23 33 0 0 chr1 192528959 192528989 -4666443 + AT_rich Low_complexity Low_complexity 1 30 0 5 2053 247 242 0 16 chr1 192529053 192529116 -4666316 + B4A SINE B4 82 143 -149 5 2053 386 238 66 9 chr1 192529063 192529169 -4666263 + PB1D10 SINE Alu 6 117 0 5 2053 245 111 0 43 chr1 192529628 192529675 -4665757 + C-rich Low_complexity Low_complexity 3 47 0 5 2053 1225 131 97 5 chr1 192530245 192530452 -4664980 + URR1A DNA MER1_type 1 226 0 6 2053 731 158 18 6 chr1 192531078 192531244 -4664188 + (TA)n Simple_repeat Simple_repeat 2 169 0 6 2053 191 146 0 24 chr1 192531259 192531301 -4664131 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 2053 354 359 0 30 chr1 192531306 192531441 -4663991 - B1F1 SINE Alu -18 131 1 6 2053 611 241 91 104 chr1 192531584 192531968 -4663464 - MTE2a LTR MaLR 0 379 1 6 2053 277 334 59 4 chr1 192532096 192532252 -4663180 - MIRb SINE MIR -4 272 99 6 2053 434 336 29 0 chr1 192532773 192532910 -4662522 + RSINE1 SINE B4 4 144 -21 6 2053 405 279 68 105 chr1 192533197 192533462 -4661970 + MTEb LTR MaLR 85 377 -2 6 2053 3017 72 31 0 chr1 192533681 192534069 -4661363 - MTB LTR MaLR 0 400 1 6 2053 288 301 23 35 chr1 192534160 192534246 -4661186 - RSINE1 SINE B4 -21 144 60 6 2053 198 0 0 0 chr1 192534533 192534555 -4660877 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 2053 572 272 7 14 chr1 192534556 192534694 -4660738 - ID_B1 SINE B4 -1 223 87 7 2053 262 323 162 0 chr1 192534857 192534956 -4660476 + PB1D10 SINE Alu 2 116 -1 7 2053 205 329 114 34 chr1 192535010 192535098 -4660334 + MIRb SINE MIR 92 186 -82 7 2053 1664 274 60 73 chr1 192535113 192535829 -4659603 + L1_Mur3 LINE L1 4959 5665 -215 7 2053 2241 299 8 35 chr1 192535832 192536581 -4658851 + Lx7 LINE L1 6584 7312 -384 7 2053 208 233 0 0 chr1 192536706 192536749 -4658683 + MIR SINE MIR 210 252 -10 7 2053 958 263 66 19 chr1 192538335 192538606 -4656826 + B4 SINE B4 9 292 0 7 2053 342 331 0 0 chr1 192538614 192538786 -4656646 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 2053 748 265 117 16 chr1 192539557 192539573 -4655859 - B4 SINE B4 -5 287 272 7 2053 369 0 0 0 chr1 192539573 192539614 -4655818 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 2053 748 265 117 16 chr1 192539614 192539854 -4655578 - B4 SINE B4 -21 271 7 7 2053 321 268 45 68 chr1 192540578 192540710 -4654722 + L2b LINE L2 3239 3367 -8 7 2053 214 366 34 43 chr1 192540988 192541105 -4654327 - MIR3 SINE MIR -91 117 2 8 2053 257 352 53 53 chr1 192541495 192541666 -4653766 + MIRc SINE MIR 3 173 -95 8 2053 655 276 40 51 chr1 192541771 192541799 -4653633 - B3 SINE B2 -42 174 155 8 2053 437 34 17 0 chr1 192541799 192541858 -4653574 + (TATG)n Simple_repeat Simple_repeat 4 63 0 8 2053 655 276 40 51 chr1 192541858 192542005 -4653427 - B3 SINE B2 -62 154 1 8 2053 719 269 0 0 chr1 192542422 192542567 -4652865 + RSINE1 SINE B4 3 147 -18 8 2053 315 0 0 0 chr1 192542574 192542609 -4652823 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 2053 378 0 0 0 chr1 192542609 192542650 -4652782 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 8 2053 21 36 0 0 chr1 192542654 192542682 -4652750 + AT_rich Low_complexity Low_complexity 1 28 0 8 2053 789 252 0 33 chr1 192542782 192542995 -4652437 + B3 SINE B2 2 207 -9 8 2053 409 257 28 68 chr1 192543166 192543318 -4652114 + MLT1J LTR MaLR 12 180 -332 8 2053 270 0 0 0 chr1 192543318 192543348 -4652084 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 2053 630 109 0 0 chr1 192543348 192543458 -4651974 + (GA)n Simple_repeat Simple_repeat 2 111 0 9 2053 241 270 111 0 chr1 192543512 192543575 -4651857 + MLT1J LTR MaLR 268 337 -175 8 2053 1064 260 100 62 chr1 192544030 192544061 -4651371 - MTD LTR MaLR -14 405 376 9 2053 2611 71 3 3 chr1 192544061 192544386 -4651046 - ORR1A2 LTR MaLR -2 325 1 9 2053 1064 260 100 62 chr1 192544386 192544744 -4650688 - MTD LTR MaLR -44 375 1 9 2054 452 57 0 41 chr1 192544805 192544878 -4650554 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 2054 228 302 30 30 chr1 192545090 192545189 -4650243 + Arthur1B DNA Tip100 249 347 -878 9 2054 680 224 121 15 chr1 192545265 192545464 -4649968 + ID_B1 SINE B4 3 222 -2 9 2054 305 242 185 11 chr1 192545515 192545607 -4649825 + PB1D10 SINE Alu 5 112 -5 9 2054 647 233 182 28 chr1 192546499 192546751 -4648681 - B4 SINE B4 0 292 2 9 2054 213 65 0 0 chr1 192547063 192547094 -4648338 + (A)n Simple_repeat Simple_repeat 1 31 0 9 2054 621 267 30 0 chr1 192547465 192547600 -4647832 + RSINE1 SINE B4 3 141 -24 1 2054 456 19 0 0 chr1 192547607 192547660 -4647772 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 2054 468 0 0 0 chr1 192547661 192547713 -4647719 + (AATAG)n Simple_repeat Simple_repeat 4 55 0 1 2054 261 0 0 0 chr1 192549536 192549565 -4645867 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 2054 378 0 0 0 chr1 192549671 192549713 -4645719 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2054 273 284 0 33 chr1 192550005 192550187 -4645245 + (CATA)n Simple_repeat Simple_repeat 4 179 0 1 2054 335 363 0 0 chr1 192550188 192550301 -4645131 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 2054 927 241 57 10 chr1 192550584 192550793 -4644639 + ID_B1 SINE B4 6 224 0 1 2054 188 367 19 0 chr1 192550805 192550895 -4644537 - L2a LINE L2 -9 3417 3272 1 2054 231 231 0 0 chr1 192552658 192552710 -4642722 + T-rich Low_complexity Low_complexity 1 52 0 1 2054 243 0 0 0 chr1 192554589 192554616 -4640816 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 2054 380 300 118 26 chr1 192554792 192555062 -4640370 + L1MC1 LINE L1 6016 6310 -23 1 2054 207 100 0 0 chr1 192555064 192555094 -4640338 + (CAAGA)n Simple_repeat Simple_repeat 3 32 0 1 2054 531 230 179 33 chr1 192555313 192555497 -4639935 + MLT1D LTR MaLR 284 494 -11 1 2054 905 229 183 21 chr1 192555569 192555877 -4639555 - MTD LTR MaLR -11 368 18 1 2054 850 180 35 98 chr1 192555965 192556005 -4639427 + B3A SINE B2 2 36 -162 1 2054 2497 117 43 0 chr1 192556005 192556380 -4639052 + ORR1B1 LTR MaLR 1 391 -3 1 2054 850 180 35 98 chr1 192556380 192556542 -4638890 + B3A SINE B2 37 191 -7 1 2054 737 84 8 0 chr1 192557085 192557204 -4638228 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 2054 846 249 134 26 chr1 192557222 192557453 -4637979 - B4 SINE B4 -32 260 5 1 2054 2095 142 114 5 chr1 192559046 192559413 -4636019 - MTC LTR MaLR -12 409 3 1 2054 747 289 95 18 chr1 192560144 192560479 -4634953 + MLT1A LTR MaLR 5 466 -1 1 2054 410 325 41 35 chr1 192560702 192560874 -4634558 - MIRb SINE MIR -76 192 20 1 2054 845 283 31 5 chr1 192560948 192561140 -4634292 + ID_B1 SINE B4 15 211 -13 1 2054 448 306 108 68 chr1 192561344 192561695 -4633737 - ORR1D2 LTR MaLR 0 370 6 1 2054 1272 275 124 82 chr1 192562413 192563035 -4632397 + Lx8 LINE L1 6376 7023 -450 1 2054 346 331 101 17 chr1 192563092 192563270 -4632162 + Lx8 LINE L1 7134 7326 -147 1 2054 386 260 60 38 chr1 192563285 192563469 -4631963 - RMER12 LTR ERVK -364 958 771 1 2054 479 291 49 7 chr1 192563548 192563690 -4631742 - B1_Mur1 SINE Alu 0 149 2 1 2054 236 299 17 86 chr1 192563960 192564077 -4631355 - RMER12 LTR ERVK -466 856 748 1 2054 1492 167 121 36 chr1 192564333 192564663 -4630769 - ORR1D2 LTR MaLR -10 360 3 1 2054 303 93 0 0 chr1 192565832 192565875 -4629557 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1 2054 1131 103 0 0 chr1 192565875 192566021 -4629411 - B1_Mus1 SINE Alu 0 148 3 1 2054 318 238 5 65 chr1 192566132 192566316 -4629116 + (CACAA)n Simple_repeat Simple_repeat 2 174 0 1 2054 327 198 10 83 chr1 192566234 192566427 -4629005 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 2054 210 268 44 44 chr1 192566399 192566559 -4628873 + (CATATA)n Simple_repeat Simple_repeat 1 160 0 1 2054 307 174 0 87 chr1 192566481 192566607 -4628825 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 2054 288 111 0 0 chr1 192566733 192566778 -4628654 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1 2054 224 253 90 39 chr1 192566882 192566960 -4628472 + PB1D10 SINE Alu 31 112 -5 1 2054 273 143 41 0 chr1 192566913 192566962 -4628470 + ID_B1 SINE B4 171 221 -3 1 2054 350 298 39 39 chr1 192567102 192567231 -4628201 - B1F SINE Alu -1 148 20 1 2054 313 234 43 108 chr1 192567114 192567253 -4628179 - ID_B1 SINE B4 -13 211 82 1 2054 335 303 64 0 chr1 192568031 192568140 -4627292 - L1MA4A LINE L1 -371 5932 5817 1 2054 760 255 88 143 chr1 192569197 192569595 -4625837 + MTE2b LTR MaLR 4 379 0 1 2054 427 271 0 0 chr1 192569624 192569720 -4625712 - RSINE1 SINE B4 -68 97 2 1 2054 763 180 228 5 chr1 192570435 192570619 -4624813 + URR1B DNA MER1_type 1 225 0 1 2054 207 88 0 0 chr1 192570893 192570927 -4624505 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 2054 352 242 33 11 chr1 192570993 192571085 -4624347 + B3A SINE B2 104 197 -1 1 2054 274 333 23 0 chr1 192572408 192572495 -4622937 + MLT1I LTR MaLR 323 411 0 1 2054 1123 234 147 22 chr1 192572762 192573081 -4622351 - ORR1E LTR MaLR 0 359 1 1 2054 280 206 243 47 chr1 192574079 192574186 -4621246 - RMER15 LTR ERVL -14 561 434 1 2054 206 329 0 27 chr1 192574517 192574667 -4620765 + (CCA)n Simple_repeat Simple_repeat 3 148 0 1 2054 261 0 0 0 chr1 192576105 192576134 -4619298 + (T)n Simple_repeat Simple_repeat 1 29 0 1 2054 1442 258 32 16 chr1 192576317 192576688 -4618744 - MTEa LTR MaLR 0 379 3 1 2054 409 282 75 35 chr1 192576984 192577238 -4618194 + L1MA8 LINE L1 6022 6285 -6 1 2054 524 206 55 18 chr1 192577927 192578036 -4617396 + PB1D10 SINE Alu 3 115 -2 1 2054 468 288 62 0 chr1 192578173 192578319 -4617113 + RSINE1 SINE B4 3 157 -8 1 2054 198 91 0 0 chr1 192578332 192578365 -4617067 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 1 2054 464 72 14 0 chr1 192579041 192579110 -4616322 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 2054 1536 42 0 3 chr1 192579905 192580653 -4614779 + (CAGG)n Simple_repeat Simple_repeat 1 745 0 1 2054 1359 181 185 0 chr1 192580894 192581197 -4614235 + ORR1D2 LTR MaLR 1 359 -11 1 2054 417 261 113 0 chr1 192581195 192581310 -4614122 - ID_B1 SINE B4 -13 211 84 1 2054 248 314 0 0 chr1 192581504 192581574 -4613858 - ID4_ SINE ID -10 73 4 1 2054 319 283 126 55 chr1 192582592 192582719 -4612713 + MER91B DNA Tip100 23 158 -32 1 2054 239 278 24 6 chr1 192582783 192582953 -4612479 + (CATA)n Simple_repeat Simple_repeat 3 175 0 1 2054 251 290 0 6 chr1 192582922 192583085 -4612347 + (CA)n Simple_repeat Simple_repeat 1 162 0 1 2054 301 301 212 16 chr1 192583603 192583792 -4611640 - L1MC5 LINE L1 -902 7059 6834 1 2054 807 116 0 0 chr1 192583917 192584029 -4611403 + B1_Mus1 SINE Alu 37 148 0 1 2054 406 247 25 0 chr1 192584083 192584164 -4611268 + RSINE1 SINE B4 2 84 -81 1 2054 212 343 68 10 chr1 192584164 192584186 -4611246 + B2_Mm1t SINE B2 1 109 -84 1 2054 198 0 0 0 chr1 192584219 192584241 -4611191 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 2054 517 252 0 27 chr1 192584270 192584380 -4611052 + ID_B1 SINE B4 114 220 -4 1 2054 706 259 98 29 chr1 192584701 192584975 -4610457 + MLT1A LTR MaLR 12 304 -70 1 2054 189 147 0 0 chr1 192585441 192585475 -4609957 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1 2054 492 18 0 0 chr1 192585680 192585737 -4609695 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 2054 333 0 0 0 chr1 192585737 192585773 -4609659 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 2054 235 347 52 52 chr1 192586452 192586607 -4608825 - ORR1D1 LTR MaLR -23 356 202 1 2054 253 178 25 99 chr1 192586730 192586811 -4608621 - ORR1D1 LTR MaLR -282 92 18 1 2054 210 254 82 66 chr1 192588196 192588318 -4607114 + B1F2 SINE Alu 2 125 -24 1 2054 250 235 74 0 chr1 192588879 192588960 -4606472 - PB1D7 SINE Alu 0 120 34 1 2054 919 226 99 5 chr1 192589132 192589345 -4606087 + B4A SINE B4 1 233 -59 1 2054 404 291 15 30 chr1 192589346 192589477 -4605955 + RSINE1 SINE B4 6 134 -31 1 2054 252 309 0 0 chr1 192589576 192589644 -4605788 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 2054 2615 115 6 0 chr1 192589785 192590150 -4605282 + ORR1B2 LTR MaLR 1 367 0 1 2054 218 277 0 30 chr1 192591308 192591375 -4604057 + C-rich Low_complexity Low_complexity 2 66 0 1 2054 902 187 105 0 chr1 192591459 192591630 -4603802 + B3 SINE B2 1 189 -27 1 2054 189 0 0 0 chr1 192591716 192591737 -4603695 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 2054 239 322 122 50 chr1 192592487 192592526 -4602906 - B3A SINE B2 -5 193 159 1 2054 530 88 0 42 chr1 192592526 192592621 -4602811 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 2054 239 322 122 50 chr1 192592621 192592761 -4602671 - B3A SINE B2 -40 158 1 1 2054 228 35 0 0 chr1 192593184 192593213 -4602219 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 2054 396 278 154 46 chr1 192593489 192593749 -4601683 + B4 SINE B4 4 291 -1 1 2054 235 250 66 0 chr1 192593954 192594030 -4601402 + L1MA7 LINE L1 6210 6290 -1 1 2054 273 302 182 21 chr1 192594547 192594838 -4600594 + L1MB4 LINE L1 5805 6142 -38 1 2054 566 239 114 66 chr1 192594872 192595027 -4600405 + B4A SINE B4 72 249 -43 1 2054 2675 104 66 2 chr1 192595027 192595421 -4600011 + MTC LTR MaLR 1 419 -2 1 2054 566 239 114 66 chr1 192595421 192595476 -4599956 + B4A SINE B4 250 292 0 1 2054 180 0 0 0 chr1 192595519 192595539 -4599893 + (A)n Simple_repeat Simple_repeat 1 20 0 1 2054 210 269 0 71 chr1 192596254 192596310 -4599122 + ID4 SINE ID 28 79 -4 1 2054 644 284 95 33 chr1 192598394 192598792 -4596640 - L1MEf LINE L1 -362 5816 5393 1 2054 858 260 40 4 chr1 192598917 192599195 -4596237 - L1MEf LINE L1 -902 5244 4957 1 2054 440 254 27 0 chr1 192599461 192599571 -4595861 - PB1D7 SINE Alu -7 113 1 1 2054 340 211 0 14 chr1 192599796 192599868 -4595564 - ID_B1 SINE B4 -3 221 151 1 2054 506 296 108 33 chr1 192600497 192600710 -4594722 - MER2 DNA MER2_type -1 344 116 1 2054 551 310 7 27 chr1 192600723 192600872 -4594560 - B1F SINE Alu -1 148 3 1 2054 549 355 110 57 chr1 192600969 192601668 -4593764 - L1MEf LINE L1 -4434 1808 1073 1 2054 352 37 37 0 chr1 192602075 192602129 -4593303 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 2054 291 375 31 8 chr1 192602299 192602428 -4593004 - MIR SINE MIR -107 155 24 2 2054 511 248 68 8 chr1 192602535 192602653 -4592779 + B1F2 SINE Alu 17 141 -8 2 2054 243 0 0 0 chr1 192602655 192602682 -4592750 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 2054 1091 202 9 28 chr1 192602810 192603024 -4592408 - B3 SINE B2 -5 211 2 2 2054 333 0 0 0 chr1 192606090 192606127 -4589305 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 2054 21 57 0 0 chr1 192611547 192611582 -4583850 + AT_rich Low_complexity Low_complexity 1 35 0 2 2054 215 209 229 98 chr1 192611754 192611876 -4583556 + B4A SINE B4 3 140 -152 2 2054 362 214 67 0 chr1 192612864 192612953 -4582479 + PB1D10 SINE Alu 9 103 -14 2 2054 318 282 147 113 chr1 192613510 192613543 -4581889 + B4 SINE B4 44 154 -138 2 2054 622 169 49 56 chr1 192613543 192613687 -4581745 + B1F SINE Alu 6 148 -1 2 2054 318 282 147 113 chr1 192613687 192613714 -4581718 + B4 SINE B4 155 254 -38 2 2054 342 186 0 0 chr1 192614245 192614304 -4581128 - HAL1-3A_ME LINE L1 -824 2034 1976 2 2054 609 52 0 0 chr1 192614352 192614429 -4581003 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 2054 302 133 0 91 chr1 192614451 192614517 -4580915 - HAL1-3A_ME LINE L1 -824 2034 1975 2 2054 23 68 0 0 chr1 192614543 192614587 -4580845 + AT_rich Low_complexity Low_complexity 1 44 0 2 2054 256 284 38 63 chr1 192615159 192615238 -4580194 + L2c LINE L2 3309 3385 -2 2 2054 257 356 11 11 chr1 192616557 192616645 -4578787 + ID_B1 SINE B4 13 100 -124 2 2054 418 252 88 7 chr1 192616641 192616789 -4578643 + B4A SINE B4 118 277 -15 2 2054 381 102 0 0 chr1 192616809 192616868 -4578564 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 2054 1453 55 66 0 chr1 192617203 192617385 -4578047 + B2_Mm2 SINE B2 1 194 -1 2 2054 233 268 88 9 chr1 192619611 192619724 -4575708 - Zaphod DNA Tip100 -99 3932 3811 2 2054 3167 39 8 0 chr1 192625233 192625614 -4569818 + L1Md_F2 LINE L1 6197 6580 -2 2 2054 25 0 0 0 chr1 192625624 192625649 -4569783 + AT_rich Low_complexity Low_complexity 1 25 0 2 2054 676 310 14 0 chr1 192625711 192625856 -4569576 + RSINE1 SINE B4 3 149 -16 2 2054 441 0 0 0 chr1 192625858 192625907 -4569525 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 2054 2708 135 34 108 chr1 192626301 192626673 -4568759 + ORR1C1-int LTR MaLR 992 1326 -183 2 2054 288 0 0 0 chr1 192626673 192626705 -4568727 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 2054 2708 135 34 108 chr1 192626705 192626889 -4568543 + ORR1C1-int LTR MaLR 1327 1507 -2 2 2054 701 175 0 16 chr1 192626891 192627019 -4568413 + ORR1C1 LTR MaLR 1 126 -252 2 2054 324 64 0 0 chr1 192627019 192627066 -4568366 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 2054 295 264 43 41 chr1 192627117 192627262 -4568170 + ORR1C1 LTR MaLR 160 302 -65 2 2054 299 277 15 13 chr1 192628539 192628649 -4566783 - MIR SINE MIR -88 188 74 2 2054 272 333 12 0 chr1 192628658 192628742 -4566690 - B1F SINE Alu -32 117 33 2 2054 1065 51 0 64 chr1 192628784 192628972 -4566460 + (GGGGA)n Simple_repeat Simple_repeat 3 178 0 2 2054 563 211 0 0 chr1 192628986 192629090 -4566342 - B1_Mur1 SINE Alu -26 123 20 2 2054 223 316 70 20 chr1 192629186 192629286 -4566146 + B4 SINE B4 70 174 -118 2 2054 411 284 28 0 chr1 192629209 192629318 -4566114 + PB1D10 SINE Alu 6 117 0 2 2054 210 222 37 0 chr1 192629453 192629507 -4565925 + (CTCTG)n Simple_repeat Simple_repeat 2 57 0 2 2054 223 301 111 80 chr1 192629826 192629838 -4565594 + L2 LINE L2 2359 2370 -1049 2 2054 670 273 148 12 chr1 192629838 192630094 -4565338 + B4 SINE B4 2 292 0 2 2054 223 301 111 80 chr1 192630094 192630280 -4565152 + L2 LINE L2 2371 2562 -857 2 2054 369 304 97 42 chr1 192631578 192631722 -4563710 + AmnSINE1 SINE SINE 400 551 -24 2 2054 271 343 73 47 chr1 192635835 192635985 -4559447 + MLT1E2 LTR MaLR 285 438 -189 2 2054 619 263 137 8 chr1 192638529 192638778 -4556654 - RMER1C Other Other -10 1332 1052 2 2054 300 228 0 0 chr1 192638800 192638857 -4556575 - RMER1C Other Other -465 877 821 2 2054 268 302 0 0 chr1 192640867 192640920 -4554512 + PB1D10 SINE Alu 33 85 -32 2 2054 660 64 0 0 chr1 192640939 192641033 -4554399 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 2054 21 0 0 0 chr1 192641174 192641195 -4554237 + AT_rich Low_complexity Low_complexity 1 21 0 2 2054 237 159 0 0 chr1 192641222 192641266 -4554166 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2 2054 247 271 157 0 chr1 192641360 192641430 -4554002 - B3 SINE B2 -7 209 129 2 2054 493 189 70 26 chr1 192641426 192641540 -4553892 - MTC LTR MaLR -302 119 1 2 2054 337 194 362 13 chr1 192641546 192641703 -4553729 + L1MC1 LINE L1 5118 5329 -1004 2 2054 493 256 92 23 chr1 192641828 192642025 -4553407 + L1MA6 LINE L1 6088 6296 -4 2 2054 653 297 166 35 chr1 192642062 192642636 -4552796 + L1MC1 LINE L1 5488 6136 -197 2 2054 467 259 147 31 chr1 192642664 192642827 -4552605 + B3A SINE B2 1 182 -16 2 2054 324 300 42 17 chr1 192642965 192643149 -4552283 - MER57D LTR ERV1 -124 310 102 2 2054 209 283 0 0 chr1 192643499 192643545 -4551887 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 2054 285 196 0 0 chr1 192644011 192644067 -4551365 + L1MC1 LINE L1 6259 6314 -19 2 2054 261 318 89 22 chr1 192645509 192645526 -4549906 + B4 SINE B4 69 151 -141 2 2054 513 198 37 19 chr1 192645526 192645634 -4549798 + B1F SINE Alu 1 110 -39 2 2054 556 226 92 57 chr1 192645641 192645782 -4549650 + B1_Mus2 SINE Alu 2 147 0 2 2054 1212 61 0 0 chr1 192647305 192647452 -4547980 + B1_Mus2 SINE Alu 1 147 0 2 2054 210 167 0 0 chr1 192647452 192647488 -4547944 + A-rich Low_complexity Low_complexity 1 36 0 2 2054 402 115 0 0 chr1 192647859 192647920 -4547512 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 2054 994 198 5 103 chr1 192648228 192648442 -4546990 + B3 SINE B2 24 216 0 2 2054 386 214 111 28 chr1 192649763 192649907 -4545525 - L1MDa LINE L1 -856 5681 5526 2 2054 770 296 81 9 chr1 192649931 192650278 -4545154 - L1MDa LINE L1 -1404 5133 4762 2 2054 284 313 9 57 chr1 192650306 192650411 -4545021 - PB1D10 SINE Alu -17 100 1 2 2054 442 309 128 0 chr1 192650474 192650678 -4544754 - L1MDa LINE L1 -1771 4766 4537 2 2054 231 322 65 16 chr1 192650677 192650863 -4544569 - L1MDa LINE L1 -2547 3990 3796 2 2054 363 283 28 0 chr1 192650958 192651103 -4544329 - L1MDa LINE L1 -2882 3655 3507 2 2054 404 253 0 0 chr1 192651745 192651824 -4543608 - RSINE1 SINE B4 -4 161 83 2 2054 564 289 60 71 chr1 192651953 192652297 -4543135 - L1MDa LINE L1 -3776 2761 2402 2 2054 393 283 20 0 chr1 192652297 192652396 -4543036 + PB1D10 SINE Alu 2 102 -15 2 2054 394 281 65 100 chr1 192652396 192652633 -4542799 - L1MDa LINE L1 -4232 2401 2189 2 2054 361 264 133 21 chr1 192652876 192652896 -4542536 - B4 SINE B4 -51 241 86 2 2054 446 203 34 39 chr1 192652896 192653016 -4542416 - B1_Mus2 SINE Alu -3 117 1 2 2054 295 266 154 59 chr1 192653016 192653072 -4542360 - MT2B LTR ERVL -441 160 92 2 2054 293 310 80 45 chr1 192654956 192655132 -4540300 - L3 LINE CR1 -14 4475 4294 2 2054 915 118 14 29 chr1 192655140 192655280 -4540152 + B1_Mur4 SINE Alu 1 138 -12 2 2054 213 211 0 0 chr1 192655281 192655333 -4540099 + GA-rich Low_complexity Low_complexity 3 54 0 2 2054 252 0 0 0 chr1 192655365 192655393 -4540039 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 2054 213 325 56 71 chr1 192655906 192656032 -4539400 - L2a LINE L2 0 3426 3303 2 2054 255 322 140 42 chr1 192657299 192657513 -4537919 + MIRb SINE MIR 26 260 -8 2 2054 201 313 139 40 chr1 192658433 192658606 -4536826 + L3 LINE CR1 4003 4192 -297 2 2054 428 214 176 38 chr1 192659132 192659263 -4536169 - B1F2 SINE Alu 0 149 1 2 2054 498 238 116 11 chr1 192659143 192659267 -4536165 - ID_B1 SINE B4 -6 218 86 2 2054 330 87 0 0 chr1 192659267 192659313 -4536119 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 2054 213 297 36 108 chr1 192659313 192659324 -4536108 - B4 SINE B4 -207 85 76 2 2054 808 278 74 0 chr1 192659329 192659559 -4535873 - B4A SINE B4 -3 289 43 2 2054 22 35 0 0 chr1 192659642 192659671 -4535761 + AT_rich Low_complexity Low_complexity 1 29 0 2 2054 1108 68 0 26 chr1 192659781 192659932 -4535500 + B1_Mus1 SINE Alu 2 148 0 2 2054 210 191 0 0 chr1 192660237 192660279 -4535153 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 2054 319 288 0 0 chr1 192660576 192660649 -4534783 + MLT1A1 LTR MaLR 56 128 -280 2 2054 373 252 284 5 chr1 192661216 192661427 -4534005 + Lx8 LINE L1 7203 7472 -1 2 2054 395 271 18 18 chr1 192661686 192661827 -4533605 + PB1D7 SINE Alu 4 144 -5 2 2054 413 346 7 0 chr1 192662263 192662399 -4533033 - MER5A1 DNA MER1_type 0 166 30 2 2054 798 143 0 0 chr1 192662604 192662737 -4532695 + (GGA)n Simple_repeat Simple_repeat 3 135 0 2 2054 372 43 0 0 chr1 192662757 192662803 -4532629 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 2 2054 32 43 0 0 chr1 192663188 192663234 -4532198 + AT_rich Low_complexity Low_complexity 1 46 0 2 2054 1153 81 0 0 chr1 192663238 192663386 -4532046 + B1_Mus1 SINE Alu 1 148 0 2 2054 405 0 0 0 chr1 192664990 192665035 -4530397 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 2054 2070 107 24 61 chr1 192665098 192665428 -4530004 + ORR1A3 LTR MaLR 1 318 -8 2 2054 8952 124 170 58 chr1 192665432 192666614 -4528818 + ORR1A3-int LTR MaLR 1 1414 -549 2 2054 192 40 0 0 chr1 192666614 192666639 -4528793 + (CAG)n Simple_repeat Simple_repeat 1 25 0 2 2054 8952 124 170 58 chr1 192666639 192667221 -4528211 + ORR1A3-int LTR MaLR 1415 1963 0 2 2054 2462 105 0 0 chr1 192667222 192667547 -4527885 + ORR1A3 LTR MaLR 2 326 0 2 2054 1037 205 67 30 chr1 192667886 192668153 -4527279 + MTEa LTR MaLR 2 278 -101 2 2054 417 90 0 0 chr1 192669152 192669219 -4526213 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 2054 405 0 0 0 chr1 192669219 192669264 -4526168 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 2054 568 260 153 33 chr1 192669264 192669538 -4525894 - Lx9 LINE L1 -228 7416 7110 2 2054 378 0 0 0 chr1 192669539 192669581 -4525851 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 2054 405 250 42 34 chr1 192669586 192669721 -4525711 + RMER20B LTR ERVK 1 126 -390 2 2054 266 318 69 64 chr1 192669806 192669994 -4525438 + RMER20B LTR ERVK 319 507 -9 2 2054 366 74 0 0 chr1 192669994 192670048 -4525384 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 2054 249 309 0 24 chr1 192670837 192670920 -4524512 + MLT2B5 LTR ERVL 175 255 -462 2 2054 399 127 0 0 chr1 192672636 192672699 -4522733 + (TCTCCC)n Simple_repeat Simple_repeat 4 66 0 2 2054 398 217 0 0 chr1 192673433 192673502 -4521930 + B1_Mur4 SINE Alu 19 87 -63 2 2054 216 239 25 123 chr1 192673776 192673857 -4521575 - BC1_Mm scRNA scRNA -74 78 6 3 2054 254 215 91 15 chr1 192674048 192674114 -4521318 + RSINE1 SINE B4 11 81 -84 3 2054 1100 224 9 0 chr1 192674359 192674573 -4520859 - B3 SINE B2 0 216 1 3 2054 285 290 63 35 chr1 192674738 192674881 -4520551 - RSINE1 SINE B4 -17 148 2 3 2055 351 0 0 0 chr1 192676017 192676056 -4519376 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 2055 1206 48 0 0 chr1 192677108 192677253 -4518179 + B1_Mus1 SINE Alu 2 146 -2 3 2055 309 226 77 94 chr1 192678409 192678526 -4516906 + PB1D10 SINE Alu 1 115 -2 3 2055 397 233 192 40 chr1 192678531 192678656 -4516776 + RSINE1 SINE B4 3 146 -19 3 2055 429 66 0 0 chr1 192678666 192678727 -4516705 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 2055 692 290 93 27 chr1 192679853 192680112 -4515320 + B4A SINE B4 3 278 -14 3 2055 291 191 0 0 chr1 192680134 192680202 -4515230 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 2055 465 34 0 0 chr1 192680397 192680456 -4514976 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 2055 644 195 7 0 chr1 192680927 192681081 -4514351 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 2055 400 303 57 104 chr1 192681354 192681671 -4513761 + L1M4c LINE L1 1117 1418 -4966 3 2055 387 240 83 13 chr1 192681746 192681863 -4513569 - PB1D10 SINE Alu 0 149 20 3 2055 868 274 67 55 chr1 192682130 192682523 -4512909 - RLTR26 LTR ERVK -201 441 24 3 2055 280 284 190 0 chr1 192682809 192683077 -4512355 + L1M4c LINE L1 2441 2759 -3623 3 2055 214 280 26 26 chr1 192683923 192684000 -4511432 - RSINE1 SINE B4 -88 77 1 3 2055 1008 39 139 0 chr1 192684981 192685110 -4510322 + B1_Mus1 SINE Alu 2 148 0 3 2055 668 238 97 0 chr1 192685994 192686179 -4509253 - MTD LTR MaLR -8 411 209 3 2055 457 307 72 0 chr1 192686297 192686450 -4508982 + RSINE1 SINE B4 1 164 -1 3 2055 1118 83 107 6 chr1 192686664 192686833 -4508599 + B2_Mm2 SINE B2 3 188 -7 3 2055 890 169 143 0 chr1 192686852 192687041 -4508391 - B3 SINE B2 0 216 1 3 2055 225 280 131 65 chr1 192687043 192687318 -4508114 - L1MEg LINE L1 -5010 1074 782 3 2055 195 42 0 0 chr1 192687550 192687574 -4507858 + (CAGTG)n Simple_repeat Simple_repeat 3 26 0 3 2055 195 42 0 0 chr1 192687607 192687631 -4507801 + (CAGTG)n Simple_repeat Simple_repeat 3 26 0 3 2055 195 42 0 0 chr1 192687664 192687688 -4507744 + (CAGTG)n Simple_repeat Simple_repeat 3 26 0 3 2055 235 244 72 60 chr1 192687821 192687904 -4507528 + MLT1K LTR MaLR 512 595 0 3 2055 324 239 99 33 chr1 192688606 192688727 -4506705 + L1M4 LINE L1 4063 4191 -1955 3 2055 568 216 14 0 chr1 192688823 192688971 -4506461 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 2055 429 260 50 0 chr1 192689482 192689609 -4505823 + B1F2 SINE Alu 6 146 -1 3 2055 626 257 45 96 chr1 192689613 192689811 -4505621 + B4A SINE B4 1 188 -104 3 2055 283 303 0 20 chr1 192690555 192690656 -4504776 + GA-rich Low_complexity Low_complexity 4 102 0 3 2055 1394 90 16 0 chr1 192691406 192691594 -4503838 + B2_Mm2 SINE B2 1 191 -4 3 2055 267 79 0 0 chr1 192691641 192691679 -4503753 + (CTG)n Simple_repeat Simple_repeat 2 39 0 3 2055 230 268 75 93 chr1 192692078 192692185 -4503247 + MLT-int LTR MaLR 1173 1277 -458 3 2055 410 304 79 51 chr1 192693470 192693570 -4501862 + HAL1 LINE L1 2 115 -2392 3 2055 1168 61 0 13 chr1 192693570 192693719 -4501713 + B1_Mus1 SINE Alu 2 148 0 3 2055 410 304 79 51 chr1 192693719 192693795 -4501637 + HAL1 LINE L1 116 183 -2324 3 2055 399 224 186 68 chr1 192693881 192694058 -4501374 + B3 SINE B2 6 203 -13 3 2055 891 232 9 46 chr1 192694226 192694443 -4500989 + B3 SINE B2 2 210 -6 3 2055 1150 106 3 3 chr1 192694731 192695018 -4500414 + (CA)n Simple_repeat Simple_repeat 1 287 0 3 2055 233 258 12 52 chr1 192696040 192696212 -4499220 + (TCTG)n Simple_repeat Simple_repeat 4 168 0 3 2055 420 233 5 43 chr1 192696287 192696471 -4498961 + (TCTG)n Simple_repeat Simple_repeat 4 180 0 3 2055 256 264 0 39 chr1 192696483 192696613 -4498819 + (TCTG)n Simple_repeat Simple_repeat 4 128 0 3 2055 457 240 116 0 chr1 192696653 192696774 -4498658 + B3 SINE B2 82 216 0 3 2055 596 200 8 8 chr1 192697121 192697247 -4498185 + RMER1B Other Other 45 170 -896 3 2055 658 154 89 0 chr1 192697247 192697370 -4498062 - RLTR22_Mur LTR ERVK -565 1283 1150 3 2055 249 259 188 40 chr1 192697384 192697533 -4497899 - RLTR22_Mur LTR ERVK -629 1219 1049 3 2055 1893 247 88 130 chr1 192697502 192698339 -4497093 - RLTR22_Mur LTR ERVK -1046 802 1 3 2055 2828 171 79 12 chr1 192698339 192698912 -4496520 + RMER1B Other Other 124 1052 -14 3 2055 820 290 128 138 chr1 192698915 192699795 -4495637 - Charlie1a DNA MER1_type -135 1320 449 3 2055 231 292 116 71 chr1 192699982 192700137 -4495295 - Charlie1a DNA MER1_type -1285 170 9 3 2055 632 279 204 7 chr1 192700436 192700721 -4494711 - MER58B DNA MER1_type 0 341 1 3 2055 210 240 0 0 chr1 192701044 192701094 -4494338 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 2055 305 194 45 75 chr1 192701946 192702013 -4493419 - ID4 SINE ID -3 80 16 3 2055 267 291 73 66 chr1 192702013 192702164 -4493268 + MTEb LTR MaLR 219 379 0 3 2055 339 151 0 121 chr1 192702214 192702229 -4493203 - HAL1-3A_ME LINE L1 -810 2048 2036 3 2055 296 258 0 0 chr1 192702229 192702295 -4493137 - ID4 SINE ID -15 68 3 3 2055 339 151 0 121 chr1 192702295 192702362 -4493070 - HAL1-3A_ME LINE L1 -823 2035 1977 3 2055 975 134 0 0 chr1 192702363 192702542 -4492890 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2055 183 222 0 0 chr1 192702543 192702588 -4492844 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 2055 214 343 20 20 chr1 192702590 192702736 -4492696 + (CATATA)n Simple_repeat Simple_repeat 4 149 0 3 2055 275 326 109 38 chr1 192703712 192704005 -4491427 + Lx8 LINE L1 7151 7464 -9 3 2055 798 185 7 0 chr1 192704012 192704147 -4491285 - B1_Mur4 SINE Alu -5 145 10 3 2055 404 236 214 63 chr1 192704564 192704709 -4490723 - B3A SINE B2 -30 168 1 3 2055 281 264 0 36 chr1 192705009 192705119 -4490313 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 2055 351 313 97 0 chr1 192705160 192705288 -4490144 - B1F SINE Alu 0 147 1 3 2055 21 36 0 0 chr1 192705297 192705325 -4490107 + AT_rich Low_complexity Low_complexity 1 28 0 3 2055 315 0 0 0 chr1 192705780 192705815 -4489617 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 2055 368 323 88 31 chr1 192705898 192706058 -4489374 - B4A SINE B4 -121 171 3 3 2055 767 188 155 5 chr1 192706371 192706558 -4488874 + B3 SINE B2 2 216 0 3 2055 310 319 31 106 chr1 192706974 192707052 -4488380 + ORR1E LTR MaLR 1 67 -292 3 2055 1194 112 33 11 chr1 192707052 192707232 -4488200 - B2_Mm2 SINE B2 -10 185 2 3 2055 310 319 31 106 chr1 192707232 192707314 -4488118 + ORR1E LTR MaLR 68 149 -210 3 2055 1131 94 0 0 chr1 192708145 192708325 -4487107 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 2055 481 198 61 9 chr1 192709525 192709649 -4485783 - B1_Mur1 SINE Alu -16 132 7 3 2055 409 297 149 0 chr1 192709891 192710039 -4485393 - B3 SINE B2 -30 186 17 3 2055 222 363 33 11 chr1 192710051 192710143 -4485289 + PB1D7 SINE Alu 18 111 -9 3 2055 255 260 144 0 chr1 192710522 192710626 -4484806 + L1M4 LINE L1 2683 2801 -3345 3 2055 248 291 79 70 chr1 192710837 192711066 -4484366 + L1M4 LINE L1 2806 3036 -3110 3 2055 220 204 55 18 chr1 192711980 192712035 -4483397 + ID_B1 SINE B4 91 147 -77 3 2055 180 194 0 0 chr1 192713492 192713523 -4481909 + MIRb SINE MIR 47 77 -191 3 2055 526 194 64 9 chr1 192713925 192714034 -4481398 - B1_Mur1 SINE Alu -33 116 2 3 2055 743 255 45 23 chr1 192714494 192714687 -4480745 + B4A SINE B4 67 265 -27 3 2055 297 0 0 0 chr1 192714687 192714720 -4480712 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 2055 743 255 45 23 chr1 192714720 192714747 -4480685 + B4A SINE B4 266 292 0 3 2055 703 252 43 43 chr1 192714963 192715170 -4480262 + B3 SINE B2 2 208 -8 3 2055 359 211 267 0 chr1 192715363 192715453 -4479979 - PB1D7 SINE Alu -6 114 1 3 2055 314 222 103 77 chr1 192715500 192715617 -4479815 - B2_Mm2 SINE B2 -10 185 66 3 2055 468 228 9 29 chr1 192715615 192715736 -4479696 - B2_Mm2 SINE B2 -96 120 2 3 2055 298 247 60 24 chr1 192715795 192715878 -4479554 + B1F SINE Alu 33 118 -31 3 2055 261 197 0 0 chr1 192715899 192715965 -4479467 + GA-rich Low_complexity Low_complexity 1 66 0 3 2055 248 340 10 31 chr1 192716955 192717052 -4478380 + ID_B1 SINE B4 79 173 -51 3 2055 442 228 0 11 chr1 192716973 192717073 -4478359 + B1_Mur2 SINE Alu 17 111 -6 3 2055 510 278 8 1 chr1 192717240 192717373 -4478059 + ID_B1 SINE B4 75 203 -21 3 2055 488 189 116 0 chr1 192717852 192717947 -4477485 + B3A SINE B2 3 108 -90 3 2055 210 330 96 56 chr1 192717947 192717974 -4477458 + RSINE1 SINE B4 4 130 -35 3 2055 226 256 21 75 chr1 192718059 192718152 -4477280 + MT2C_Mm LTR ERVL 201 288 -187 3 2055 670 222 7 7 chr1 192718093 192718229 -4477203 + B1_Mur1 SINE Alu 13 148 -1 3 2055 215 250 0 0 chr1 192718247 192718291 -4477141 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 3 2055 1640 162 109 20 chr1 192718356 192718703 -4476729 + ORR1C1 LTR MaLR 1 378 0 3 2055 764 295 7 54 chr1 192718768 192719044 -4476388 + Charlie1a DNA MER1_type 98 360 -1095 3 2055 844 300 150 69 chr1 192719039 192719319 -4476113 + Charlie1a DNA MER1_type 505 814 -641 3 2055 901 218 63 15 chr1 192719319 192719524 -4475908 - B3 SINE B2 0 216 2 3 2055 844 300 150 69 chr1 192719524 192719848 -4475584 + Charlie1a DNA MER1_type 815 1158 -297 3 2055 259 295 31 31 chr1 192719870 192719968 -4475464 + Charlie1a DNA MER1_type 1325 1422 -33 3 2055 366 268 88 18 chr1 192720787 192720901 -4474531 - MTEa LTR MaLR -8 371 250 3 2055 336 228 164 8 chr1 192720922 192720977 -4474455 - MTEa LTR MaLR -169 190 127 3 2055 507 56 0 0 chr1 192720977 192721048 -4474384 + (CCA)n Simple_repeat Simple_repeat 2 72 0 3 2055 336 228 164 8 chr1 192721048 192721120 -4474312 - MTEa LTR MaLR -233 126 44 3 2055 204 372 10 0 chr1 192721659 192721761 -4473671 + G-rich Low_complexity Low_complexity 5 107 0 3 2055 553 149 33 0 chr1 192721768 192721889 -4473543 + GA-rich Low_complexity Low_complexity 3 127 0 3 2055 607 303 67 46 chr1 192722008 192722354 -4473078 + ORR1E LTR MaLR 3 355 -4 3 2055 988 300 118 89 chr1 192722356 192723008 -4472424 + ORR1E-int LTR MaLR 1 671 -909 3 2055 218 271 0 0 chr1 192723216 192723264 -4472168 + ID2 SINE ID 8 55 -28 3 2055 572 222 63 7 chr1 192723903 192724076 -4471356 - B3A SINE B2 -31 185 1 3 2055 693 214 27 14 chr1 192725319 192725466 -4469966 + B1F SINE Alu 1 149 0 4 2055 260 290 34 72 chr1 192726439 192726609 -4468823 - B4 SINE B4 -103 189 29 4 2055 222 259 17 0 chr1 192727138 192727196 -4468236 - B4A SINE B4 -232 60 2 4 2055 275 220 40 0 chr1 192729290 192729340 -4466092 - ID4_ SINE ID -4 79 28 4 2055 545 331 144 32 chr1 192730024 192730336 -4465096 + MLT1A0 LTR MaLR 5 351 -14 4 2055 1380 75 32 0 chr1 192730345 192730533 -4464899 + B2_Mm2 SINE B2 1 194 -1 4 2055 478 266 109 27 chr1 192730578 192730725 -4464707 + RSINE1 SINE B4 7 165 0 4 2055 441 214 0 0 chr1 192731139 192731237 -4464195 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 2055 255 378 51 15 chr1 192731374 192731511 -4463921 + MIR SINE MIR 70 211 -51 4 2055 353 259 67 20 chr1 192731632 192731782 -4463650 + L1M4 LINE L1 4464 4620 -1526 4 2055 233 257 119 0 chr1 192731910 192732011 -4463421 + L1M4 LINE L1 5651 5763 -401 4 2055 238 204 20 0 chr1 192732724 192732773 -4462659 + RSINE1 SINE B4 114 163 -2 4 2055 180 0 0 0 chr1 192732894 192732914 -4462518 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 2055 1195 193 0 0 chr1 192733478 192733690 -4461742 + B3 SINE B2 5 216 0 4 2055 202 348 72 52 chr1 192734306 192734403 -4461029 + MIRb SINE MIR 42 140 -128 4 2055 740 172 0 0 chr1 192734609 192734725 -4460707 - RSINE1 SINE B4 -42 123 8 4 2055 377 240 82 6 chr1 192736096 192736197 -4459235 + B1F SINE Alu 29 149 0 4 2055 813 246 42 47 chr1 192736577 192736790 -4458642 + B3 SINE B2 2 213 -3 4 2055 598 231 145 36 chr1 192737002 192737195 -4458237 - B3 SINE B2 -1 215 2 4 2055 237 178 0 0 chr1 192737655 192737700 -4457732 + T-rich Low_complexity Low_complexity 1 45 0 4 2055 868 182 108 27 chr1 192738066 192738252 -4457180 + B3 SINE B2 3 203 -13 4 2055 212 308 15 30 chr1 192738356 192738423 -4457009 - ID2 SINE ID 0 83 18 4 2055 328 278 83 26 chr1 192738428 192738620 -4456812 + L1M5 LINE L1 2366 2568 -3578 4 2055 261 0 0 0 chr1 192738621 192738650 -4456782 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 2055 493 244 0 0 chr1 192738652 192738742 -4456690 - RSINE1 SINE B4 -68 97 8 4 2055 362 238 25 118 chr1 192738802 192738921 -4456511 + MT2B LTR ERVL 157 264 -337 4 2055 910 168 0 0 chr1 192738818 192738955 -4456477 + B1_Mur3 SINE Alu 12 148 -1 4 2055 422 214 153 0 chr1 192738955 192739053 -4456379 + B1_Mur1 SINE Alu 10 122 -27 4 2055 270 158 211 0 chr1 192739178 192739235 -4456197 - PB1D9 SINE Alu -51 69 1 4 2055 486 0 0 0 chr1 192739477 192739531 -4455901 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 2055 258 255 87 116 chr1 192739603 192739776 -4455656 + MT2B LTR ERVL 97 264 -320 4 2055 820 95 9 0 chr1 192739693 192739809 -4455623 + B1_Mur4 SINE Alu 32 148 -2 4 2055 1565 162 132 15 chr1 192739865 192740198 -4455234 - ORR1D1 LTR MaLR -1 373 2 4 2055 361 206 162 29 chr1 192740198 192740303 -4455129 + PB1D9 SINE Alu 1 119 -1 4 2055 694 12 0 0 chr1 192740404 192740490 -4454942 - L1Md_T LINE L1 -1 6581 6496 4 2055 513 236 16 139 chr1 192740563 192740750 -4454682 + RSINE1 SINE B4 2 165 0 4 2055 24 0 0 0 chr1 192740754 192740778 -4454654 + AT_rich Low_complexity Low_complexity 1 24 0 4 2055 271 252 236 0 chr1 192740778 192740901 -4454531 + RSINE1 SINE B4 2 153 -12 4 2055 1309 11 29 0 chr1 192740905 192741080 -4454352 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 2055 1246 34 34 0 chr1 192741091 192741503 -4453929 + (TAGA)n Simple_repeat Simple_repeat 1 426 0 4 2055 327 104 0 0 chr1 192741508 192741556 -4453876 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 4 2055 922 265 22 0 chr1 192741559 192741744 -4453688 + B3 SINE B2 7 195 -21 4 2055 579 183 6 184 chr1 192741921 192742005 -4453427 + B1_Mur4 SINE Alu 2 82 -68 4 2055 2407 83 6 58 chr1 192742005 192742352 -4453080 + ORR1A4 LTR MaLR 1 329 0 4 2055 1270 42 77 12 chr1 192742360 192742529 -4452903 + B2_Mm2 SINE B2 2 181 -14 4 2055 579 183 6 184 chr1 192742529 192742609 -4452823 + B1_Mur4 SINE Alu 83 144 -6 4 2055 291 271 81 12 chr1 192743145 192743231 -4452201 - B1F SINE Alu -12 137 46 4 2055 306 261 29 0 chr1 192743241 192743310 -4452122 - ID_B1 SINE B4 -38 186 116 4 2055 254 326 49 142 chr1 192743376 192743580 -4451852 + MER21B LTR ERV1 16 200 -663 4 2055 240 344 45 15 chr1 192743641 192743774 -4451658 - RMER15 LTR ERVL -6 569 433 4 2055 607 246 0 25 chr1 192744271 192744392 -4451040 - PB1D9 SINE Alu 0 120 3 4 2055 291 54 0 0 chr1 192744404 192744441 -4450991 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 2055 297 277 0 0 chr1 192744442 192744554 -4450878 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 2055 401 270 123 31 chr1 192744575 192744705 -4450727 + B1F1 SINE Alu 1 142 -7 4 2055 240 205 0 0 chr1 192745029 192745068 -4450364 - B1_Mus1 SINE Alu -109 39 1 4 2055 2843 193 58 24 chr1 192745136 192745757 -4449675 - Lx5 LINE L1 -755 6295 5654 4 2055 945 125 284 20 chr1 192745770 192745974 -4449458 + Lx4A LINE L1 6799 7056 -2 4 2055 21 0 0 0 chr1 192748029 192748050 -4447382 + AT_rich Low_complexity Low_complexity 1 21 0 4 2055 3988 147 91 14 chr1 192748058 192748817 -4446615 + MTC-int LTR MaLR 356 1396 -567 4 2055 365 80 0 0 chr1 192748798 192748848 -4446584 - MT-int LTR MaLR -66 1032 983 4 2055 2580 73 55 0 chr1 192748846 192749189 -4446243 + MTB_Mm LTR MaLR 46 407 0 4 2055 505 222 0 0 chr1 192749189 192749287 -4446145 - B1_Mus1 SINE Alu -50 98 1 4 2055 334 344 31 31 chr1 192749383 192749512 -4445920 - B1F2 SINE Alu -16 133 5 4 2055 827 183 72 6 chr1 192749595 192749776 -4445656 - B2_Mm2 SINE B2 -2 193 1 4 2055 429 226 117 31 chr1 192749819 192749947 -4445485 + B1_Mur1 SINE Alu 3 141 -8 4 2055 436 257 37 0 chr1 192749970 192750079 -4445353 - B3 SINE B2 0 216 104 4 2055 458 304 9 0 chr1 192750193 192750305 -4445127 + ID_B1 SINE B4 89 201 -23 4 2055 383 223 61 41 chr1 192750350 192750448 -4444984 - PB1D7 SINE Alu -6 114 15 4 2055 1036 87 0 0 chr1 192750711 192750849 -4444583 + B1_Mus2 SINE Alu 10 147 0 4 2055 492 99 0 0 chr1 192750849 192750920 -4444512 + (GGAA)n Simple_repeat Simple_repeat 1 71 0 4 2055 1315 288 147 4 chr1 192751252 192751716 -4443716 - MER82 DNA MER2_type 0 653 124 4 2055 256 292 0 0 chr1 192751861 192751926 -4443506 - MER82 DNA MER2_type -581 72 8 4 2055 181 53 79 0 chr1 192752683 192752721 -4442711 + (CGGGG)n Simple_repeat Simple_repeat 4 44 0 4 2055 28 71 0 0 chr1 192752855 192752911 -4442521 + GC_rich Low_complexity Low_complexity 1 56 0 4 2055 441 256 0 86 chr1 192753006 192753134 -4442298 + B1F SINE Alu 1 117 0 4 2055 248 338 132 26 chr1 192753180 192753332 -4442100 - MER113A DNA MER1_type -133 181 14 4 2055 234 333 104 15 chr1 192753388 192753522 -4441910 - L2b LINE L2 -18 3357 3212 4 2055 780 149 15 15 chr1 192753675 192753811 -4441621 - B1_Mus2 SINE Alu -1 146 11 4 2055 340 263 0 50 chr1 192754195 192754295 -4441137 + B4A SINE B4 1 95 -197 4 2055 9342 101 138 41 chr1 192754356 192756004 -4439428 - RLTR22_Mus LTR ERVK 0 1808 1 4 2055 248 256 91 23 chr1 192756017 192756105 -4439327 + B4A SINE B4 185 278 -14 4 2055 538 205 54 0 chr1 192759854 192759966 -4435466 - PB1D7 SINE Alu 0 120 3 4 2055 271 240 214 20 chr1 192760294 192760392 -4435040 - PB1D10 SINE Alu 0 117 1 4 2055 360 64 0 0 chr1 192760409 192760456 -4434976 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 2055 411 132 0 0 chr1 192760456 192760524 -4434908 + (CATA)n Simple_repeat Simple_repeat 3 70 0 4 2055 342 0 0 0 chr1 192760974 192761012 -4434420 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 2055 573 261 67 0 chr1 192761890 192762024 -4433408 - ID_B1 SINE B4 0 224 82 4 2055 1004 206 77 0 chr1 192762115 192762309 -4433123 + B3 SINE B2 2 210 -6 4 2055 296 319 89 0 chr1 192762345 192762444 -4432988 + B1F SINE Alu 1 107 -13 4 2055 609 183 145 0 chr1 192762705 192762836 -4432596 + B1_Mur4 SINE Alu 1 150 0 4 2055 736 195 25 31 chr1 192763200 192763359 -4432073 - B3 SINE B2 -57 159 2 4 2055 768 244 39 10 chr1 192763377 192763584 -4431848 - B3 SINE B2 0 216 4 4 2055 297 313 111 0 chr1 192764250 192764349 -4431083 - PB1D10 SINE Alu -7 110 1 4 2055 459 267 52 22 chr1 192764366 192764382 -4431050 + B1F SINE Alu 6 143 -6 4 2055 474 239 17 42 chr1 192764382 192764500 -4430932 + ID_B1 SINE B4 104 218 -6 4 2055 216 0 0 0 chr1 192766266 192766290 -4429142 + (T)n Simple_repeat Simple_repeat 1 24 0 4 2055 728 85 133 37 chr1 192766346 192766481 -4428951 + B2_Mm2 SINE B2 47 194 -1 4 2055 25 0 0 0 chr1 192766902 192766927 -4428505 + AT_rich Low_complexity Low_complexity 1 25 0 4 2055 886 144 14 7 chr1 192766999 192767146 -4428286 + B1_Mur4 SINE Alu 1 148 -2 4 2055 283 323 31 0 chr1 192767334 192767430 -4428002 + B1F SINE Alu 24 122 -27 4 2055 259 286 83 37 chr1 192767430 192767443 -4427989 + ID_B1 SINE B4 105 218 -6 4 2055 575 234 41 28 chr1 192767444 192767589 -4427843 + B1F SINE Alu 3 149 0 4 2055 530 274 38 23 chr1 192769523 192769654 -4425778 + ID_B1 SINE B4 92 224 0 4 2055 189 0 0 0 chr1 192769654 192769675 -4425757 + (A)n Simple_repeat Simple_repeat 1 21 0 4 2055 401 282 25 33 chr1 192769737 192769858 -4425574 + PB1D9 SINE Alu 1 120 0 4 2055 1019 117 0 11 chr1 192770962 192771143 -4424289 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 2055 569 234 93 14 chr1 192771145 192771284 -4424148 - B4 SINE B4 -6 286 137 5 2055 436 292 18 0 chr1 192774515 192774628 -4420804 - PB1D10 SINE Alu 0 117 3 5 2055 829 175 7 14 chr1 192774818 192774957 -4420475 + B1_Mus2 SINE Alu 9 146 -1 5 2055 210 238 104 60 chr1 192775529 192775596 -4419836 - PB1D10 SINE Alu 0 117 48 5 2055 757 260 69 62 chr1 192776106 192776381 -4419051 - B4A SINE B4 -1 291 15 5 2055 247 228 79 27 chr1 192776396 192776476 -4418956 - PB1 SINE Alu -30 97 12 5 2055 261 245 340 0 chr1 192776739 192776833 -4418599 + RSINE1 SINE B4 14 139 -26 5 2055 599 53 0 0 chr1 192778350 192778426 -4417006 - B2_Mm2 SINE B2 -118 77 2 5 2055 338 265 72 50 chr1 192778533 192778672 -4416760 + MER5A DNA MER1_type 9 150 -39 5 2055 215 300 70 14 chr1 192779059 192779130 -4416302 - MIR3 SINE MIR -48 160 86 5 2055 1741 162 107 14 chr1 192779581 192779926 -4415506 + RLTR11A2 LTR ERVK 1 377 -150 5 2055 182 388 45 32 chr1 192781620 192781777 -4413655 + MIRc SINE MIR 62 220 -48 5 2055 217 297 70 26 chr1 192782284 192782398 -4413034 - MIRc SINE MIR -133 135 17 5 2055 616 293 141 20 chr1 192783254 192783560 -4411872 - MER2 DNA MER2_type 0 345 3 5 2055 788 255 45 22 chr1 192783607 192783840 -4411592 + MTEa LTR MaLR 1 273 -148 5 2055 983 124 0 14 chr1 192784411 192784558 -4410874 + B1_Mur3 SINE Alu 5 149 0 5 2055 449 192 32 0 chr1 192784884 192785009 -4410423 + (TG)n Simple_repeat Simple_repeat 2 130 0 5 2055 513 235 188 61 chr1 192785010 192785031 -4410401 - B4 SINE B4 0 292 279 5 2055 180 0 0 0 chr1 192785031 192785051 -4410381 + (GTGTG)n Simple_repeat Simple_repeat 2 21 0 5 2055 513 235 188 61 chr1 192785051 192785210 -4410222 - B4 SINE B4 -14 278 89 5 2055 423 0 0 0 chr1 192785212 192785259 -4410173 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 2055 979 193 48 14 chr1 192785260 192785470 -4409962 + ORR1D1 LTR MaLR 156 372 -2 5 2055 478 242 70 82 chr1 192785526 192785616 -4409816 + ID_B1 SINE B4 7 94 -130 5 2055 359 230 115 27 chr1 192785616 192785739 -4409693 + PB1D10 SINE Alu 3 145 -3 5 2055 675 116 0 0 chr1 192786130 192786242 -4409190 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 5 2055 604 276 68 92 chr1 192787497 192787539 -4407893 + B4A SINE B4 1 42 -250 5 2055 1139 65 7 0 chr1 192787539 192787677 -4407755 + B1_Mus1 SINE Alu 1 139 -9 5 2055 604 276 68 92 chr1 192787677 192787874 -4407558 + B4A SINE B4 43 233 -59 5 2055 387 308 24 59 chr1 192787874 192787954 -4407478 + B4A SINE B4 3 76 -216 5 2055 215 320 0 118 chr1 192787954 192788064 -4407368 + B1F2 SINE Alu 1 97 -52 5 2055 941 292 50 34 chr1 192788188 192788547 -4406885 + MTD LTR MaLR 1 386 -14 5 2055 767 158 60 8 chr1 192790470 192790604 -4404828 - B1_Mur2 SINE Alu -7 142 2 5 2055 211 267 52 95 chr1 192791069 192791185 -4404247 + L2c LINE L2 3225 3335 -52 5 2055 222 118 0 0 chr1 192791372 192791406 -4404026 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 5 2055 749 162 0 6 chr1 192791454 192791628 -4403804 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 2055 925 69 8 8 chr1 192794893 192795024 -4400408 - B2_Mm2 SINE B2 -63 132 2 5 2055 333 0 0 0 chr1 192796106 192796143 -4399289 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 2055 252 0 0 0 chr1 192796143 192796170 -4399262 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 2055 459 214 154 0 chr1 192797494 192797611 -4397821 + RSINE1 SINE B4 3 137 -28 5 2055 232 299 13 101 chr1 192797789 192797938 -4397494 - MLT1A0 LTR MaLR -226 139 4 5 2055 185 275 67 29 chr1 192798919 192799024 -4396408 + L2 LINE L2 736 844 -2575 5 2055 228 247 211 11 chr1 192799498 192799588 -4395844 + ID_B1 SINE B4 116 223 -1 5 2055 344 273 113 8 chr1 192799663 192799796 -4395636 + B1F SINE Alu 3 149 0 5 2055 903 197 88 0 chr1 192799798 192799991 -4395441 + B3 SINE B2 1 210 -6 5 2055 21 0 0 0 chr1 192799996 192800017 -4395415 + AT_rich Low_complexity Low_complexity 1 21 0 5 2055 580 191 0 26 chr1 192800030 192800143 -4395289 + B1_Mur2 SINE Alu 39 148 -1 5 2055 477 291 35 0 chr1 192800280 192800421 -4395011 - B1F SINE Alu 0 149 4 5 2055 180 291 0 0 chr1 192800586 192800665 -4394767 + GA-rich Low_complexity Low_complexity 1 79 0 5 2055 718 198 11 0 chr1 192803691 192803868 -4391564 + CT-rich Low_complexity Low_complexity 1 179 0 5 2055 258 136 0 0 chr1 192803870 192803914 -4391518 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 2055 632 0 45 0 chr1 192803925 192804013 -4391419 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 2055 27 29 0 0 chr1 192804187 192804221 -4391211 + AT_rich Low_complexity Low_complexity 1 34 0 5 2055 560 271 32 19 chr1 192804243 192804278 -4391154 - RSINE1 SINE B4 -3 162 126 5 2055 359 119 15 0 chr1 192804278 192804345 -4391087 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 2055 560 271 32 19 chr1 192804345 192804467 -4390965 - RSINE1 SINE B4 -40 125 3 5 2055 233 191 0 0 chr1 192804505 192804547 -4390885 + CT-rich Low_complexity Low_complexity 4 45 0 5 2055 242 356 11 0 chr1 192805569 192805659 -4389773 - MIR SINE MIR -9 253 163 5 2055 733 219 20 46 chr1 192806152 192806305 -4389127 - B1_Mur3 SINE Alu 0 149 1 5 256 2773 49 6 177 chr1 192806630 192807100 -4388332 - RLTR10 LTR ERVK 0 390 1 5 2056 12670 33 0 1 chr1 192807102 192808974 -4386458 - RLTR10-int LTR ERVK -3 1984 41 5 2056 2688 49 6 205 chr1 192808984 192809471 -4385961 - RLTR10 LTR ERVK 0 390 1 5 2056 4581 213 69 73 chr1 192809653 192810880 -4384552 - RMER12 LTR ERVK -100 1222 1 5 2056 234 0 0 0 chr1 192811157 192811183 -4384249 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 2056 271 319 88 0 chr1 192811192 192811305 -4384127 - MT2A LTR ERVL -77 456 334 5 2056 320 257 67 29 chr1 192811367 192811471 -4383961 - MT2A LTR ERVL -297 236 129 5 2056 267 154 0 0 chr1 192811472 192811537 -4383895 + (CCCCAG)n Simple_repeat Simple_repeat 4 68 0 5 2056 230 196 135 19 chr1 192811834 192811886 -4383546 - B4A SINE B4 -18 274 217 5 2056 409 308 18 110 chr1 192811911 192812075 -4383357 - RSINE1 SINE B4 -15 150 2 5 2056 353 276 84 89 chr1 192812158 192812361 -4383071 - B4 SINE B4 -90 202 1 5 2056 414 0 0 0 chr1 192812385 192812431 -4383001 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 2056 698 192 24 0 chr1 192812984 192813109 -4382323 + RSINE1 SINE B4 3 130 -35 5 2056 309 26 0 0 chr1 192813110 192813148 -4382284 + (CATA)n Simple_repeat Simple_repeat 2 39 0 5 2056 265 281 0 50 chr1 192813174 192813234 -4382198 + PB1D7 SINE Alu 4 60 -60 5 2056 471 221 71 0 chr1 192813267 192813380 -4382052 - Tigger5 DNA MER2_type -72 2334 2214 5 2056 1032 237 0 5 chr1 192813630 192813842 -4381590 + B3 SINE B2 2 212 -4 5 2056 189 0 0 0 chr1 192814199 192814220 -4381212 + (TTG)n Simple_repeat Simple_repeat 3 23 0 5 2056 5006 90 19 38 chr1 192814254 192815024 -4380408 + RMER6A LTR ERVK 1 756 0 5 2056 192 301 168 21 chr1 192815621 192815716 -4379716 + MIR3 SINE MIR 61 169 -39 5 2056 272 336 17 43 chr1 192815723 192815838 -4379594 + MER5B DNA MER1_type 15 126 -52 5 2056 343 304 50 0 chr1 192816062 192816161 -4379271 - L2a LINE L2 -1 3425 3271 5 2056 203 325 47 24 chr1 192817138 192817223 -4378209 + MER5A DNA MER1_type 24 110 -79 5 2056 260 138 50 33 chr1 192818767 192818827 -4376605 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 5 2056 962 203 70 15 chr1 192819934 192820134 -4375298 - ID_B1 SINE B4 -11 213 3 5 2056 678 122 178 47 chr1 192820751 192820880 -4374552 - B1_Mm SINE Alu 0 147 2 5 2056 812 234 78 0 chr1 192820880 192821045 -4374387 - B3 SINE B2 -37 179 2 5 2056 579 153 0 0 chr1 192821343 192821474 -4373958 + CT-rich Low_complexity Low_complexity 2 132 0 5 2056 917 196 7 0 chr1 192821475 192821623 -4373809 - B1_Mur3 SINE Alu 0 149 1 5 2056 2201 288 70 52 chr1 192822213 192822956 -4372476 - MTE-int LTR MaLR -353 1227 467 5 2056 270 0 0 0 chr1 192822956 192822986 -4372446 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5 2056 2201 299 109 124 chr1 192822986 192823357 -4372075 - MTE-int LTR MaLR -1114 466 3 5 2056 1635 236 26 55 chr1 192823362 192823532 -4371900 - MTE2b LTR MaLR -2 377 208 5 2056 1101 114 22 28 chr1 192823532 192823713 -4371719 + B2_Mm2 SINE B2 1 180 -15 5 2056 1635 236 26 55 chr1 192823713 192823923 -4371509 - MTE2b LTR MaLR -172 207 8 5 2056 1127 239 34 11 chr1 192823930 192824197 -4371235 - MTEb LTR MaLR -106 273 1 5 2056 339 179 0 0 chr1 192824259 192824326 -4371106 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 2056 378 267 54 189 chr1 192824884 192825037 -4370395 - MTE-int LTR MaLR -7 1573 1444 5 2056 1220 68 0 0 chr1 192825037 192825185 -4370247 - B1_Mus1 SINE Alu 0 148 1 5 2056 378 267 54 189 chr1 192825185 192825253 -4370179 - MTE-int LTR MaLR -137 1443 1382 5 2056 2505 284 58 165 chr1 192825779 192826869 -4368563 - MTE-int LTR MaLR -194 1386 357 5 2056 609 194 287 12 chr1 192826869 192827036 -4368396 - B3 SINE B2 -3 213 1 5 2056 2505 284 58 165 chr1 192827036 192827367 -4368065 - MTE-int LTR MaLR -1224 356 118 5 2056 537 266 266 0 chr1 192827362 192827588 -4367844 - ORR1E LTR MaLR -73 286 1 5 2056 23 0 0 0 chr1 192827755 192827778 -4367654 + AT_rich Low_complexity Low_complexity 1 23 0 5 2056 655 227 61 0 chr1 192827785 192827917 -4367515 - ID_B1 SINE B4 -7 217 78 5 2056 504 182 71 52 chr1 192828015 192828138 -4367294 - B1_Mus2 SINE Alu 0 147 1 5 2056 555 215 32 155 chr1 192828160 192828321 -4367111 - RSINE1 SINE B4 0 165 25 5 2056 2332 114 6 9 chr1 192828321 192828649 -4366783 + ORR1A2 LTR MaLR 1 327 0 5 2056 555 215 32 155 chr1 192828649 192828674 -4366758 - RSINE1 SINE B4 -141 24 2 5 2056 326 248 39 62 chr1 192828674 192828803 -4366629 - L1M3c LINE L1 -5138 1003 878 5 2056 332 336 171 9 chr1 192829003 192829219 -4366213 - L1M3c LINE L1 -5701 440 190 5 2056 659 276 74 47 chr1 192829385 192829575 -4365857 - B3A SINE B2 0 198 4 5 2056 22 0 0 0 chr1 192829732 192829754 -4365678 + AT_rich Low_complexity Low_complexity 1 22 0 5 2056 285 312 62 34 chr1 192830561 192830712 -4364720 - MIRc SINE MIR -41 167 21 5 2056 246 32 0 0 chr1 192831509 192831540 -4363892 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 2056 726 144 169 14 chr1 192832724 192832880 -4362552 - B3 SINE B2 0 216 51 6 2056 734 140 31 101 chr1 192833003 192833162 -4362270 - B1_Mur3 SINE Alu 0 149 2 6 2056 1196 61 0 0 chr1 192833173 192833320 -4362112 - B1_Mus2 SINE Alu 0 147 1 6 2056 4773 129 29 77 chr1 192833615 192834563 -4360869 + RLTR13D6 LTR ERVK 1 902 0 6 2056 1632 26 11 0 chr1 192834721 192834910 -4360522 - B2_Mm1a SINE B2 -1 192 2 6 2056 597 179 17 8 chr1 192834912 192835030 -4360402 - ID_B1 SINE B4 0 224 106 6 2056 260 308 19 28 chr1 192835862 192835969 -4359463 + PB1D10 SINE Alu 4 109 -8 6 2056 1193 56 130 6 chr1 192836344 192836505 -4358927 + B2_Mm2 SINE B2 1 181 -14 6 2056 584 231 21 14 chr1 192837073 192837218 -4358214 + B1F2 SINE Alu 2 147 -2 6 2056 368 276 15 38 chr1 192837988 192838120 -4357312 + MLT1A1 LTR MaLR 272 400 -8 6 2056 201 39 0 0 chr1 192839468 192839494 -4355938 + (TCCCC)n Simple_repeat Simple_repeat 1 26 0 6 2056 737 156 8 0 chr1 192840918 192841040 -4354392 + B1_Mur3 SINE Alu 5 127 -22 6 2056 413 225 178 28 chr1 192841415 192841662 -4353770 + RLTR15 LTR ERVK 1 284 -75 6 2056 840 161 14 0 chr1 192842354 192842497 -4352935 - ID_B1 SINE B4 0 224 80 6 2056 21 0 0 0 chr1 192842816 192842837 -4352595 + AT_rich Low_complexity Low_complexity 1 21 0 6 2056 764 230 53 39 chr1 192842837 192843045 -4352387 - B3 SINE B2 0 216 6 6 2056 1495 58 15 26 chr1 192843069 192843264 -4352168 - B2_Mm2 SINE B2 0 195 3 6 2056 690 204 98 88 chr1 192843267 192843460 -4351972 - B3A SINE B2 -2 196 2 6 2056 234 0 0 0 chr1 192844282 192844308 -4351124 + (A)n Simple_repeat Simple_repeat 1 26 0 6 2056 347 240 128 13 chr1 192845310 192845466 -4349966 + L1MB5 LINE L1 5183 5356 -790 6 2056 405 0 0 0 chr1 192845466 192845511 -4349921 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 2056 339 226 313 8 chr1 192845511 192845607 -4349825 + L1MB5 LINE L1 5357 5485 -693 6 2056 1125 78 156 0 chr1 192845607 192845774 -4349658 + B2_Mm1t SINE B2 1 193 0 6 2056 348 294 76 23 chr1 192845774 192846095 -4349337 + L1MB5 LINE L1 5486 5966 -208 6 2056 875 276 32 18 chr1 192846099 192846383 -4349049 + B4A SINE B4 1 288 -4 6 2056 1044 89 49 32 chr1 192846616 192846783 -4348649 + B2_Mm2 SINE B2 8 180 -15 6 2056 1077 86 0 0 chr1 192846783 192846923 -4348509 + B1_Mm SINE Alu 2 141 -6 6 2056 402 74 0 0 chr1 192846924 192846978 -4348454 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 6 2056 1044 89 49 32 chr1 192846978 192846993 -4348439 + B2_Mm2 SINE B2 181 195 0 6 2056 602 113 10 0 chr1 192846993 192847090 -4348342 + (GAAA)n Simple_repeat Simple_repeat 1 98 0 6 2056 216 322 33 54 chr1 192847190 192847282 -4348150 - L2b LINE L2 -299 3076 2987 6 2056 198 346 0 0 chr1 192847443 192847521 -4347911 + MIR SINE MIR 84 161 -101 6 2056 1655 31 5 0 chr1 192847907 192848099 -4347333 + B2_Mm1t SINE B2 1 193 0 6 2056 415 230 109 16 chr1 192848477 192848605 -4346827 + B1F SINE Alu 9 148 -1 6 2056 304 156 16 0 chr1 192849007 192849071 -4346361 - B4 SINE B4 -5 287 223 6 2056 280 257 92 0 chr1 192849086 192849195 -4346237 - B4A SINE B4 -172 120 2 6 2056 351 213 28 21 chr1 192850684 192850774 -4344658 - B1_Mur4 SINE Alu -8 112 28 6 2056 237 312 75 0 chr1 192850859 192850952 -4344480 + Lx8 LINE L1 7189 7288 -185 6 2056 204 40 0 0 chr1 192851409 192851434 -4343998 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 2056 313 239 10 80 chr1 192851446 192851546 -4343886 + PB1 SINE Alu 15 107 -20 6 2056 935 264 4 35 chr1 192851593 192851821 -4343611 - ID_B1 SINE B4 -2 222 2 6 2056 258 139 62 25 chr1 192852330 192852399 -4343033 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 2056 1362 67 45 0 chr1 192852399 192852578 -4342854 - B2_Mm2 SINE B2 -8 187 1 6 2056 258 139 62 25 chr1 192852578 192852589 -4342843 + (TA)n Simple_repeat Simple_repeat 1 12 0 6 2056 736 197 0 40 chr1 192852594 192852742 -4342690 - B1_Mur2 SINE Alu 0 149 8 6 2056 261 215 0 177 chr1 192852665 192852761 -4342671 - MT2B LTR ERVL -362 239 161 6 2056 205 103 128 0 chr1 192852777 192852816 -4342616 + MIR SINE MIR 74 117 -145 6 2056 405 86 0 0 chr1 192852989 192853047 -4342385 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 2056 1360 68 0 28 chr1 192854386 192854567 -4340865 + B2_Mm2 SINE B2 2 177 -18 6 2056 715 247 75 21 chr1 192855074 192855260 -4340172 + B3 SINE B2 2 197 -19 6 2056 396 306 100 42 chr1 192855347 192855586 -4339846 + ORR1E LTR MaLR 1 253 -106 6 2056 1607 131 46 112 chr1 192855593 192856032 -4339400 - RMER17C LTR ERVK 0 410 1 6 2056 305 240 13 0 chr1 192856070 192856145 -4339287 + ORR1E LTR MaLR 278 353 -26 6 2056 704 176 271 0 chr1 192856242 192856412 -4339020 + B3 SINE B2 1 216 0 6 2056 1343 101 16 11 chr1 192856439 192856630 -4338802 + B2_Mm2 SINE B2 1 192 -3 6 2056 882 161 41 51 chr1 192857082 192857279 -4338153 - B2_Mm2 SINE B2 0 195 1 6 2056 441 304 17 0 chr1 192857294 192857409 -4338023 - PB1D10 SINE Alu 0 117 1 6 2056 1064 167 31 5 chr1 192857525 192857748 -4337684 + MTC LTR MaLR 5 233 -188 6 2056 6930 63 18 22 chr1 192857748 192858676 -4336756 + L1_Mus3 LINE L1 5713 6637 -1 6 2056 1307 104 39 0 chr1 192858676 192858858 -4336574 + B2_Mm2 SINE B2 2 190 -5 6 2056 1081 129 62 79 chr1 192858859 192859086 -4336346 + MTC LTR MaLR 199 421 0 6 2056 264 190 17 33 chr1 192859955 192860015 -4335417 + B1_Mus2 SINE Alu 1 59 -88 6 2056 554 165 0 0 chr1 192860048 192860139 -4335293 + B1_Mur2 SINE Alu 41 131 -18 6 2056 423 0 0 0 chr1 192860139 192860186 -4335246 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 6 2056 352 235 20 30 chr1 192860934 192861035 -4334397 - PB1 SINE Alu 0 127 28 6 2056 457 70 0 0 chr1 192861524 192861581 -4333851 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 6 2056 393 22 0 0 chr1 192861581 192861627 -4333805 + (TCTCCC)n Simple_repeat Simple_repeat 2 47 0 6 2056 664 50 40 0 chr1 192861620 192861719 -4333713 + (TTTCC)n Simple_repeat Simple_repeat 5 107 0 6 2056 1005 101 0 29 chr1 192861719 192861892 -4333540 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 6 2056 196 340 112 46 chr1 192861938 192862135 -4333297 - MIR SINE MIR -49 213 4 6 2056 646 197 61 0 chr1 192862469 192862601 -4332831 - B1_Mur2 SINE Alu -7 142 3 6 2056 235 314 30 82 chr1 192862601 192862632 -4332800 - MT2B LTR ERVL -441 160 137 6 2056 523 220 67 22 chr1 192862865 192863000 -4332432 - B1F SINE Alu -2 147 7 6 2056 403 250 40 73 chr1 192863000 192863013 -4332419 - ID_B1 SINE B4 0 221 79 6 2056 1660 26 0 20 chr1 192864939 192865135 -4330297 + B2_Mm1a SINE B2 2 193 0 6 2056 1296 201 91 3 chr1 192865528 192865858 -4329574 - ORR1D2 LTR MaLR -4 366 8 6 2056 281 99 0 90 chr1 192866457 192866546 -4328886 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 6 2056 326 245 160 0 chr1 192866868 192866962 -4328470 + PB1D10 SINE Alu 2 110 -7 6 2056 398 208 101 2 chr1 192868317 192868423 -4327009 + B1_Mur1 SINE Alu 2 119 -30 6 2056 22 0 0 0 chr1 192868445 192868467 -4326965 + AT_rich Low_complexity Low_complexity 1 22 0 6 2056 557 170 35 35 chr1 192869793 192869909 -4325523 - B3A SINE B2 -82 116 1 6 2056 285 29 0 0 chr1 192870258 192870292 -4325140 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 2056 941 127 267 0 chr1 192870733 192870898 -4324534 - B3 SINE B2 -7 209 1 6 2056 1302 95 26 11 chr1 192870911 192871102 -4324330 - B2_Mm2 SINE B2 -1 194 1 6 2056 1258 41 0 0 chr1 192871289 192871436 -4323996 + B1_Mus2 SINE Alu 1 147 0 6 2056 216 0 0 0 chr1 192871436 192871460 -4323972 + (A)n Simple_repeat Simple_repeat 1 24 0 6 2056 561 265 15 0 chr1 192871516 192871648 -4323784 + ID_B1 SINE B4 84 217 -7 6 2056 259 136 17 17 chr1 192871657 192871717 -4323715 + (CATA)n Simple_repeat Simple_repeat 4 63 0 6 2056 1147 146 73 0 chr1 192871737 192871929 -4323503 - B3 SINE B2 -9 207 2 6 2056 820 155 0 0 chr1 192871979 192872108 -4323324 + B3 SINE B2 2 130 -86 6 2056 879 128 8 8 chr1 192872457 192872591 -4322841 + B1_Mur2 SINE Alu 1 134 -15 6 2056 539 268 8 0 chr1 192872696 192872823 -4322609 + ID_B1 SINE B4 86 213 -11 6 2056 212 256 0 0 chr1 192872825 192872868 -4322564 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 6 2056 995 286 43 19 chr1 192873921 192874295 -4321137 - L1MB7 LINE L1 -180 6004 5622 6 2056 1140 38 0 0 chr1 192877061 192877194 -4318238 + B1_Mus2 SINE Alu 2 134 -13 6 2056 207 0 0 0 chr1 192877194 192877217 -4318215 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 6 2056 267 31 0 0 chr1 192877453 192877485 -4317947 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 2056 1022 229 9 0 chr1 192878283 192878497 -4316935 + B3 SINE B2 1 216 0 6 2056 550 230 23 41 chr1 192878856 192879028 -4316404 + B3 SINE B2 37 205 -11 6 2056 338 274 239 0 chr1 192879807 192879920 -4315512 - RSINE1 SINE B4 -23 142 3 6 2056 772 96 52 0 chr1 192880905 192881020 -4314412 + B1_Mur4 SINE Alu 1 121 -29 6 2056 304 289 121 15 chr1 192881023 192881218 -4314214 - B3A SINE B2 -6 210 1 6 2056 570 233 138 4 chr1 192881779 192881952 -4313480 - B3A SINE B2 -10 185 1 6 2056 231 182 146 0 chr1 192881971 192882026 -4313406 - ID4_ SINE ID -13 70 8 6 2056 749 222 68 15 chr1 192882059 192882265 -4313167 - B4A SINE B4 -74 218 2 6 2056 282 291 84 17 chr1 192882435 192882554 -4312878 + B1F1 SINE Alu 1 127 -22 7 2056 649 221 7 35 chr1 192882921 192883066 -4312366 - B1_Mur1 SINE Alu -5 144 4 7 2056 211 281 31 0 chr1 192883174 192883238 -4312194 + AluG_3 SINE Alu 155 220 -91 7 2056 1025 39 63 0 chr1 192883276 192883403 -4312029 + B1_Mus2 SINE Alu 1 135 -12 7 2056 207 0 0 0 chr1 192883410 192883433 -4311999 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 2056 493 255 122 83 chr1 192883444 192883722 -4311710 + B4A SINE B4 4 292 0 7 2056 360 0 0 0 chr1 192883754 192883794 -4311638 + (CACAC)n Simple_repeat Simple_repeat 1 40 0 7 2056 727 101 8 8 chr1 192883812 192883932 -4311500 + (GAA)n Simple_repeat Simple_repeat 3 122 0 7 2056 486 33 0 0 chr1 192883932 192883992 -4311440 + (CCA)n Simple_repeat Simple_repeat 2 61 0 7 2056 228 67 0 0 chr1 192884067 192884097 -4311335 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 7 2056 31 26 0 0 chr1 192884144 192884182 -4311250 + AT_rich Low_complexity Low_complexity 1 38 0 7 2056 524 231 42 66 chr1 192884480 192884647 -4310785 - RSINE1 SINE B4 0 165 3 7 2056 236 247 77 83 chr1 192884810 192884991 -4310441 + MIR SINE MIR 65 244 -18 7 2056 535 235 70 0 chr1 192887717 192887832 -4307600 + B1_Mur1 SINE Alu 1 123 -26 7 2056 274 212 23 91 chr1 192888523 192888611 -4306821 - ID2 SINE ID 0 83 2 7 2056 1437 127 100 130 chr1 192889217 192889578 -4305854 + ORR1C2 LTR MaLR 1 350 -34 7 2056 480 284 119 54 chr1 192889604 192889803 -4305629 + RMER21B LTR ERV1 291 509 -333 7 2056 1071 109 0 7 chr1 192889803 192889950 -4305482 - B1_Mus1 SINE Alu -1 147 2 7 2056 480 284 119 54 chr1 192889950 192890010 -4305422 + RMER21B LTR ERV1 510 566 -276 7 2056 308 133 100 0 chr1 192890032 192890092 -4305340 + ORR1C2 LTR MaLR 319 384 0 7 2056 394 307 142 7 chr1 192890117 192890258 -4305174 - RSINE1 SINE B4 -4 161 2 7 2056 897 62 0 0 chr1 192890630 192890742 -4304690 - ORR1A3 LTR MaLR -8 318 207 7 2056 3347 75 16 81 chr1 192890898 192891287 -4304145 - MT2C_Mm LTR ERVL 0 475 103 7 2056 1154 42 28 0 chr1 192891287 192891429 -4304003 + B1_Mm SINE Alu 2 147 0 7 2056 3347 75 16 81 chr1 192891429 192891547 -4303885 - MT2C_Mm LTR ERVL -373 102 1 7 2056 193 151 0 36 chr1 192892017 192892072 -4303360 + CT-rich Low_complexity Low_complexity 2 54 0 7 2056 586 201 58 22 chr1 192892075 192892212 -4303220 - B1_Mur4 SINE Alu -1 149 8 7 2056 296 252 8 86 chr1 192892114 192892231 -4303201 - MT2B LTR ERVL -339 262 155 7 2056 228 226 45 61 chr1 192892483 192892549 -4302883 + RSINE1 SINE B4 85 149 -16 7 2056 244 276 13 13 chr1 192892951 192893028 -4302404 - ID4_ SINE ID -5 78 2 7 2056 201 39 0 0 chr1 192893048 192893074 -4302358 + (T)n Simple_repeat Simple_repeat 1 26 0 7 2056 210 209 0 23 chr1 192894068 192894112 -4301320 - PB1D10 SINE Alu -28 89 47 7 2056 288 215 31 0 chr1 192895866 192895931 -4299501 - ID2 SINE ID 0 83 17 7 2056 590 235 17 0 chr1 192895947 192896062 -4299370 - PB1D10 SINE Alu 0 117 1 7 2056 183 42 0 0 chr1 192896169 192896193 -4299239 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 2056 1038 53 23 0 chr1 192896193 192896324 -4299108 - B1_Mus1 SINE Alu -9 139 6 7 2056 207 0 0 0 chr1 192896325 192896348 -4299084 + (CCA)n Simple_repeat Simple_repeat 2 24 0 7 2056 830 269 142 28 chr1 192897472 192897797 -4297635 - RMER5 LTR ERV1 -20 514 153 7 2056 661 259 20 7 chr1 192898253 192898401 -4297031 - RSINE1 SINE B4 -12 153 4 7 2056 287 348 17 0 chr1 192898468 192898583 -4296849 - PB1D10 SINE Alu 0 117 1 7 2056 666 163 101 0 chr1 192898693 192898822 -4296610 - B1_Mur1 SINE Alu 0 149 8 7 2056 280 265 94 6 chr1 192899200 192899371 -4296061 - HAL1 LINE L1 -621 1886 1701 7 2056 252 320 41 0 chr1 192899731 192899828 -4295604 + MER20B DNA MER1_type 193 293 -490 7 2056 1103 38 46 0 chr1 192900183 192900314 -4295118 + B1_Mus2 SINE Alu 1 137 -10 7 2056 198 0 0 0 chr1 192900314 192900336 -4295096 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 7 2056 231 182 23 0 chr1 192900614 192900658 -4294774 - ORR1D1 LTR MaLR -313 61 17 7 2056 360 269 140 15 chr1 192900744 192900880 -4294552 - MLT1F1 LTR MaLR 0 569 417 7 2056 1990 184 101 16 chr1 192901122 192901542 -4293890 - MT2A LTR ERVL 0 515 72 7 2056 829 237 26 26 chr1 192901610 192901805 -4293627 + B3A SINE B2 2 196 -2 7 2056 1238 201 97 65 chr1 192902103 192902412 -4293020 + MTD LTR MaLR 58 381 -38 7 2056 1848 160 63 23 chr1 192902412 192902763 -4292669 - ORR1B2 LTR MaLR -2 365 1 7 2056 1238 201 97 65 chr1 192902763 192902804 -4292628 + MTD LTR MaLR 382 419 0 7 2056 355 303 98 41 chr1 192903174 192903441 -4291991 - L1M4c LINE L1 -3813 2566 2273 7 2056 432 0 0 0 chr1 192903652 192903700 -4291732 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 2056 307 373 62 27 chr1 192903702 192903848 -4291584 - RSINE1 SINE B4 -11 154 4 7 2056 748 182 8 8 chr1 192904109 192904242 -4291190 + B1_Mus1 SINE Alu 2 134 -14 7 2056 470 245 119 0 chr1 192904708 192904851 -4290581 - MIRb SINE MIR -11 257 98 7 2056 223 182 0 0 chr1 192905138 192905182 -4290250 + T-rich Low_complexity Low_complexity 1 44 0 7 2056 1477 58 16 10 chr1 192905182 192905374 -4290058 - B2_Mm2 SINE B2 0 195 3 7 2056 1281 34 0 7 chr1 192906934 192907082 -4288350 - B1_Mm SINE Alu 0 147 1 7 2056 351 44 0 0 chr1 192908598 192908643 -4286789 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 2056 873 191 86 45 chr1 192908911 192909109 -4286323 + B3 SINE B2 8 213 -3 7 2056 476 254 123 0 chr1 192909186 192909308 -4286124 + RSINE1 SINE B4 14 150 -15 7 2056 307 217 216 52 chr1 192909344 192909441 -4285991 - B1_Mus1 SINE Alu 0 120 8 7 2056 392 284 81 31 chr1 192910036 192910196 -4285236 - RMER5 LTR ERV1 -1 533 366 7 2056 531 241 9 0 chr1 192910249 192910365 -4285067 + PB1D10 SINE Alu 1 117 0 7 2056 232 234 0 0 chr1 192911144 192911191 -4284241 + ID4 SINE ID 15 61 -22 7 2056 373 215 0 0 chr1 192911298 192911363 -4284069 + PB1D10 SINE Alu 41 105 -12 7 2056 227 250 0 163 chr1 192911448 192911534 -4283898 - ID4 SINE ID -3 80 9 7 2056 1336 52 87 0 chr1 192912139 192912311 -4283121 - B2_Mm2 SINE B2 -7 188 2 7 2056 783 241 53 34 chr1 192912557 192912763 -4282669 - B3 SINE B2 -6 210 1 7 2056 1012 176 79 45 chr1 192912919 192913121 -4282311 + B3 SINE B2 3 211 -5 7 2056 291 270 54 43 chr1 192913144 192913237 -4282195 + PB1D10 SINE Alu 23 116 -1 7 2056 774 251 107 4 chr1 192913807 192914079 -4281353 - RMER1C Other Other 0 1342 1043 7 2056 794 244 94 81 chr1 192914082 192914305 -4281127 - RMER20B LTR ERVK -25 602 377 7 2056 1311 93 0 0 chr1 192914308 192914480 -4280952 + B2_Mm2 SINE B2 2 173 -22 7 2056 287 164 164 0 chr1 192914511 192914572 -4280860 + B3A SINE B2 46 116 -82 7 2056 232 122 0 20 chr1 192914562 192914612 -4280820 + B2_Mm2 SINE B2 137 185 -10 7 2056 335 97 233 14 chr1 192914598 192914671 -4280761 - RMER20B LTR ERVK -205 422 334 7 2056 725 215 29 44 chr1 192915013 192915217 -4280215 - RMER1C Other Other -358 984 784 7 2056 333 205 13 13 chr1 192915582 192915661 -4279771 - ID_B1 SINE B4 -108 116 38 7 2056 1135 231 32 4 chr1 192915662 192915910 -4279522 + MTD LTR MaLR 1 255 -164 7 2056 192 339 42 51 chr1 192916465 192916583 -4278849 + L3b LINE CR1 158 274 -208 7 2056 252 0 0 0 chr1 192916705 192916733 -4278699 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 2056 220 167 23 23 chr1 192916921 192916964 -4278468 + B4 SINE B4 23 65 -227 7 2056 291 267 173 49 chr1 192917022 192917207 -4278225 - Arthur1 DNA Tip100 -871 3076 2869 7 2056 538 236 224 0 chr1 192917208 192917382 -4278050 + B3 SINE B2 3 215 -1 7 2056 972 327 180 9 chr1 192917456 192917984 -4277448 - Arthur1 DNA Tip100 -3260 687 70 7 2056 310 306 40 10 chr1 192917961 192918060 -4277372 + ORR1E LTR MaLR 19 120 -239 7 2056 404 237 69 35 chr1 192918313 192918457 -4276975 - B4 SINE B4 -139 153 5 7 2056 220 206 77 31 chr1 192918847 192918912 -4276520 + L2 LINE L2 2813 2880 -539 7 2056 547 165 72 0 chr1 192919695 192919792 -4275640 - PB1D9 SINE Alu -1 119 16 7 2056 203 0 37 0 chr1 192919792 192919819 -4275613 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 2056 525 32 0 0 chr1 192919819 192919882 -4275550 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 7 2056 335 214 0 0 chr1 192919882 192919938 -4275494 - B1_Mur1 SINE Alu -18 131 76 7 2056 630 194 134 35 chr1 192920111 192920282 -4275150 + B3 SINE B2 1 188 -28 7 2056 737 168 83 15 chr1 192920295 192920428 -4275004 + B1_Mur3 SINE Alu 2 143 -6 7 2056 418 324 21 14 chr1 192920719 192920863 -4274569 - B1F1 SINE Alu 0 149 5 7 2056 21 0 0 0 chr1 192921662 192921683 -4273749 + GC_rich Low_complexity Low_complexity 1 21 0 7 2056 326 295 11 28 chr1 192922112 192922290 -4273142 + (CGGGG)n Simple_repeat Simple_repeat 1 175 0 7 2056 236 280 116 11 chr1 192922955 192923050 -4272382 + MIR SINE MIR 43 146 -122 7 2056 220 330 52 0 chr1 192924238 192924335 -4271097 + MIRb SINE MIR 38 139 -129 7 2056 272 269 39 0 chr1 192924353 192924431 -4271001 - ID4_ SINE ID -1 82 2 7 2056 264 250 132 19 chr1 192924944 192925050 -4270382 + PB1D7 SINE Alu 1 118 -2 7 2056 228 280 47 34 chr1 192925063 192925079 -4270353 + ORR1D1-int LTR MaLR 605 618 -891 7 2056 781 245 36 32 chr1 192925079 192925298 -4270134 + ID_B1 SINE B4 5 224 0 7 2056 228 280 47 34 chr1 192925298 192925318 -4270114 + ORR1D1-int LTR MaLR 619 638 -871 7 2056 279 0 0 0 chr1 192925318 192925349 -4270083 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 2056 885 159 14 20 chr1 192925354 192925502 -4269930 + B1_Mur2 SINE Alu 3 149 0 8 2056 472 195 11 44 chr1 192925537 192925628 -4269804 + ID_B1 SINE B4 136 223 -1 8 2056 966 208 52 26 chr1 192925699 192925931 -4269501 + ORR1D1 LTR MaLR 4 241 -133 7 2056 410 161 102 12 chr1 192925961 192926070 -4269362 - PB1D10 SINE Alu -1 116 1 8 2056 520 203 28 16 chr1 192926072 192926324 -4269108 + CT-rich Low_complexity Low_complexity 1 255 0 8 2056 1060 47 0 0 chr1 192926352 192926481 -4268951 + B1_Mus2 SINE Alu 9 137 -10 8 2056 1424 84 16 16 chr1 192927385 192927579 -4267853 - B2_Mm2 SINE B2 0 195 2 8 2056 254 242 15 29 chr1 192929291 192929359 -4266073 - RSINE1 SINE B4 -4 161 95 8 2056 871 204 141 0 chr1 192929377 192929568 -4265864 - ID_B1 SINE B4 -5 219 2 8 2056 351 202 0 0 chr1 192929603 192929682 -4265750 + (TATG)n Simple_repeat Simple_repeat 2 80 0 8 2056 366 23 0 0 chr1 192929768 192929811 -4265621 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 2056 280 311 74 0 chr1 192931083 192931205 -4264227 + L3 LINE CR1 3491 3621 -868 8 2056 354 358 116 28 chr1 192931358 192931746 -4263686 + L3 LINE CR1 3922 4343 -146 8 2056 393 191 62 31 chr1 192932210 192932307 -4263125 - PB1D10 SINE Alu -17 100 1 8 2056 24 32 0 0 chr1 192933061 192933092 -4262340 + AT_rich Low_complexity Low_complexity 1 31 0 8 2056 480 209 0 11 chr1 192933097 192933184 -4262248 - PB1D9 SINE Alu -9 111 26 8 2056 722 240 84 99 chr1 192933228 192933441 -4261991 - B3 SINE B2 -5 211 2 8 2056 1084 107 7 7 chr1 192933694 192933844 -4261588 - B1_Mur4 SINE Alu 0 150 1 8 2056 449 287 31 146 chr1 192933964 192934286 -4261146 + B4A SINE B4 4 288 -4 8 2056 1010 251 58 8 chr1 192935922 192936183 -4259249 + MTEa LTR MaLR 21 294 -85 8 2056 898 129 127 12 chr1 192936200 192936365 -4259067 - B2_Mm2 SINE B2 -10 185 2 8 2056 315 0 0 0 chr1 192936388 192936423 -4259009 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 8 2056 761 262 0 26 chr1 192936429 192936582 -4258850 - RSINE1 SINE B4 -13 152 4 8 2056 419 161 36 24 chr1 192936585 192936668 -4258764 + MTEa LTR MaLR 284 367 -12 8 2056 385 247 75 0 chr1 192937353 192937446 -4257986 + PB1D7 SINE Alu 6 106 -43 8 2056 633 148 99 0 chr1 192937447 192937548 -4257884 + PB1D9 SINE Alu 1 111 -9 8 2056 568 287 53 0 chr1 192937555 192937705 -4257727 + ID_B1 SINE B4 2 159 -65 8 2057 407 206 0 0 chr1 192938159 192938227 -4257205 - ID_B1 SINE B4 -8 216 149 8 2057 772 218 43 10 chr1 192938227 192938435 -4256997 + B3 SINE B2 2 216 0 8 2057 244 285 145 122 chr1 192939474 192939830 -4255602 + LTR33 LTR ERVL 91 450 -70 8 2057 749 207 0 14 chr1 192940105 192940247 -4255185 + B1_Mur2 SINE Alu 4 143 -6 8 2057 938 216 21 16 chr1 192940273 192940461 -4254971 - B3 SINE B2 -27 189 1 8 2057 1975 14 0 0 chr1 192940477 192940700 -4254732 - L1Md_A LINE L1 0 6582 6360 8 2057 430 104 0 0 chr1 192940702 192940769 -4254663 - B2_Mm1t SINE B2 -2 191 125 8 2057 1391 84 17 0 chr1 192940802 192940980 -4254452 - B2_Mm2 SINE B2 -14 181 1 8 2057 514 103 23 0 chr1 192940980 192941067 -4254365 + (TCC)n Simple_repeat Simple_repeat 3 91 0 8 2057 217 48 47 23 chr1 192941464 192941507 -4253925 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 8 2057 1186 68 0 20 chr1 192941507 192941656 -4253776 - B1_Mus1 SINE Alu 0 148 3 8 2057 296 221 0 31 chr1 192941720 192941818 -4253614 + (TG)n Simple_repeat Simple_repeat 2 96 0 8 2057 352 277 29 38 chr1 192941912 192942017 -4253415 - B4A SINE B4 -106 186 83 8 2057 889 244 5 20 chr1 192942021 192942222 -4253210 - B3 SINE B2 -16 200 3 8 2057 228 24 73 0 chr1 192942247 192942288 -4253144 + (ATTG)n Simple_repeat Simple_repeat 1 44 0 8 2057 379 303 20 29 chr1 192942294 192942396 -4253036 - RSINE1 SINE B4 -11 154 54 8 2057 318 267 13 0 chr1 192942405 192942480 -4252952 - B4A SINE B4 -215 77 2 8 2057 772 214 135 31 chr1 192943190 192943412 -4252020 - MTD LTR MaLR -4 415 171 8 2057 1749 172 112 14 chr1 192943428 192943777 -4251655 - ORR1C2 LTR MaLR 0 384 2 8 2057 875 238 32 0 chr1 192943820 192944005 -4251427 + ID_B1 SINE B4 24 214 -10 8 2057 310 309 0 0 chr1 192944006 192944090 -4251342 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 8 2057 420 237 6 28 chr1 192944101 192944279 -4251153 + (CATA)n Simple_repeat Simple_repeat 2 175 0 8 2057 408 157 14 0 chr1 192944284 192944354 -4251078 + HAL1-3A_ME LINE L1 1976 2046 -812 8 2057 2144 24 0 0 chr1 192944803 192945053 -4250379 + LSU-rRNA_Hsa rRNA rRNA 3670 3919 -1116 8 2057 792 147 0 0 chr1 192945142 192945278 -4250154 + (TA)n Simple_repeat Simple_repeat 2 137 0 8 2057 600 212 265 0 chr1 192945334 192945504 -4249928 - B3 SINE B2 -1 215 1 8 2057 368 268 54 78 chr1 192945530 192945696 -4249736 - MTEb LTR MaLR 0 379 218 8 2057 413 285 156 24 chr1 192945695 192945907 -4249525 + ORR1D2 LTR MaLR 43 282 -88 8 2057 255 206 95 0 chr1 192946257 192946320 -4249112 - MTEa LTR MaLR 0 379 311 8 2057 558 248 34 0 chr1 192946309 192946426 -4249006 - MTEa LTR MaLR -258 121 1 8 2057 402 21 0 0 chr1 192946449 192946496 -4248936 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 2057 185 333 85 23 chr1 192946532 192946661 -4248771 + L4 LINE RTE 1893 2029 0 8 2057 659 172 103 15 chr1 192947116 192947252 -4248180 - B1_Mur1 SINE Alu 0 149 2 8 2057 362 304 25 76 chr1 192947401 192947558 -4247874 + B4A SINE B4 2 150 -142 8 2057 516 81 0 0 chr1 192947558 192947632 -4247800 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 2057 545 257 65 71 chr1 192948618 192948802 -4246630 + B4 SINE B4 106 288 -4 8 2057 402 310 11 11 chr1 192948816 192948992 -4246440 + (CA)n Simple_repeat Simple_repeat 1 176 0 8 2057 236 264 0 8 chr1 192949013 192949139 -4246293 + (CA)n Simple_repeat Simple_repeat 1 125 0 8 2057 248 244 94 62 chr1 192950463 192950559 -4244873 - YREP_Mm Unknown Unknown -1491 321 223 8 2057 388 187 10 117 chr1 192950485 192950588 -4244844 + PB1D10 SINE Alu 24 115 -2 8 2057 183 80 0 0 chr1 192950591 192950616 -4244816 + (CCA)n Simple_repeat Simple_repeat 1 25 0 8 2057 1057 156 124 5 chr1 192950639 192950832 -4244600 + B3 SINE B2 1 216 0 8 2057 484 184 23 11 chr1 192950905 192950993 -4244439 + B1_Mus2 SINE Alu 13 101 -46 8 2057 1042 242 4 57 chr1 192951028 192951226 -4244206 - B3 SINE B2 0 216 30 8 2057 5704 101 14 11 chr1 192951226 192952030 -4243402 - RLTR13D1 LTR ERVK 0 806 1 8 2057 1042 242 4 57 chr1 192952030 192952059 -4243373 - B3 SINE B2 -187 29 1 8 2057 799 85 0 0 chr1 192952087 192952193 -4243239 + B2_Mm2 SINE B2 2 107 -88 8 2057 263 72 0 23 chr1 192952257 192952300 -4243132 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 8 2057 408 40 0 0 chr1 192952512 192952562 -4242870 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 2057 596 261 69 38 chr1 192952610 192952769 -4242663 - RSINE1 SINE B4 0 165 2 8 2057 5178 141 103 0 chr1 192953030 192953846 -4241586 - RMER19B LTR ERVK 0 902 3 8 2057 1089 165 90 0 chr1 192953848 192954048 -4241384 - URR1A DNA MER1_type -8 218 1 8 2057 235 196 0 21 chr1 192954858 192954905 -4240527 + MER66C LTR ERV1 454 499 -56 8 2057 246 188 21 0 chr1 192955305 192955353 -4240079 - RSINE1 SINE B4 -2 163 115 8 2057 251 123 0 34 chr1 192955858 192955917 -4239515 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 8 2057 374 0 22 0 chr1 192955927 192955973 -4239459 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 2057 375 244 37 0 chr1 192956132 192956214 -4239218 + B1_Mur2 SINE Alu 64 148 -1 8 2057 565 252 101 13 chr1 192956241 192956311 -4239121 + ID SINE ID 1 83 -141 8 2057 293 239 9 150 chr1 192956311 192956424 -4239008 + PB1D7 SINE Alu 2 98 -22 8 2057 225 0 0 0 chr1 192956665 192956690 -4238742 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 2057 292 272 48 81 chr1 192957149 192957273 -4238159 + PB1 SINE Alu 1 120 -7 8 2057 505 292 37 30 chr1 192957366 192957500 -4237932 + RSINE1 SINE B4 3 137 -28 8 2057 420 350 72 69 chr1 192958211 192958586 -4236846 + MTEa LTR MaLR 1 376 -3 8 2057 923 217 0 6 chr1 192958650 192958817 -4236615 - MTE2b LTR MaLR 0 379 214 8 2057 2017 255 65 37 chr1 192958842 192958978 -4236454 + Lx8 LINE L1 6496 6627 -846 8 2057 995 270 92 92 chr1 192958978 192959590 -4235842 + RLTR18 LTR ERVK 1 612 -4 8 2057 2017 255 65 37 chr1 192959590 192960048 -4235384 + Lx8 LINE L1 6628 7107 -366 8 2057 465 244 68 25 chr1 192960254 192960372 -4235060 + B3A SINE B2 2 124 -74 8 2057 1762 194 6 28 chr1 192960434 192960757 -4234675 + MTC LTR MaLR 1 316 -105 8 2057 300 140 60 0 chr1 192960768 192960818 -4234614 - MTE2b LTR MaLR -325 54 2 8 2057 617 244 20 22 chr1 192961042 192961185 -4234247 + MTD LTR MaLR 21 171 -248 8 2057 510 271 19 83 chr1 192961300 192961457 -4233975 + RSINE1 SINE B4 9 155 -10 8 2057 264 318 22 11 chr1 192961565 192961654 -4233778 + B4A SINE B4 125 214 -78 8 2057 1262 197 25 29 chr1 192961661 192961938 -4233494 + RLTR46 LTR ERVK 40 315 -5 8 2057 228 35 0 0 chr1 192962014 192962043 -4233389 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 2057 248 171 37 146 chr1 192962050 192962132 -4233300 - PB1D10 SINE Alu -61 88 16 8 2057 386 179 374 36 chr1 192963533 192963592 -4231840 + ID SINE ID 1 60 -164 8 2057 3162 17 0 0 chr1 192963592 192963938 -4231494 - ORR1A0 LTR MaLR 0 346 1 8 2057 386 179 374 36 chr1 192963938 192964017 -4231415 + ID_B1 SINE B4 61 186 -38 8 2057 1438 62 56 0 chr1 192964060 192964239 -4231193 - B2_Mm2 SINE B2 -5 190 2 8 2057 580 173 10 0 chr1 192964364 192964468 -4230964 - ORR1D2 LTR MaLR -261 109 5 8 2057 3915 255 68 91 chr1 192964477 192965869 -4229563 - ORR1D2-int LTR MaLR -4 1366 7 8 2057 1794 116 10 61 chr1 192966139 192966450 -4228982 - RLTRETN_Mm LTR ERVK 0 322 28 8 2057 32577 79 9 35 chr1 192966501 192970599 -4224833 - MMETn-int LTR ERVK -26 4818 796 8 2057 3652 18 0 0 chr1 192970599 192970995 -4224437 + MTA_Mm LTR MaLR 1 396 0 9 2057 9146 41 4 1 chr1 192970995 192972090 -4223342 + MTA_Mm-int LTR MaLR 1 1098 0 9 2057 3652 18 0 0 chr1 192972090 192972486 -4222946 + MTA_Mm LTR MaLR 1 396 0 9 2057 32577 79 9 35 chr1 192972486 192973331 -4222101 - MMETn-int LTR ERVK -4049 795 4 8 2057 1941 119 9 56 chr1 192973332 192973670 -4221762 - RLTRETN_Mm LTR ERVK 0 322 1 8 2057 812 191 15 0 chr1 192973786 192973922 -4221510 + B1_Mus2 SINE Alu 1 138 -9 9 2057 213 193 98 66 chr1 192974388 192974449 -4220983 + MIRc SINE MIR 81 143 -125 9 2057 361 202 344 79 chr1 192974919 192975137 -4220295 - RMER15 LTR ERVL 0 575 300 9 2057 201 74 0 0 chr1 192975276 192975303 -4220129 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 9 2057 297 318 157 9 chr1 192975580 192975688 -4219744 + MLT1H1 LTR MaLR 244 367 -188 9 2057 337 213 0 0 chr1 192975741 192975802 -4219630 - B3 SINE B2 -149 67 7 9 2057 319 252 145 19 chr1 192975911 192976011 -4219421 + B3A SINE B2 53 157 -59 9 2057 241 186 96 41 chr1 192975971 192976044 -4219388 + ID_B1 SINE B4 49 125 -99 9 2057 198 0 0 0 chr1 192978611 192978633 -4216799 + (T)n Simple_repeat Simple_repeat 1 22 0 9 2057 207 0 0 0 chr1 192979226 192979249 -4216183 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 2057 577 247 1 17 chr1 192979296 192979420 -4216012 + RSINE1 SINE B4 19 141 -24 9 2057 342 0 0 0 chr1 192979428 192979466 -4215966 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 2057 351 145 0 0 chr1 192979513 192979596 -4215836 + (TC)n Simple_repeat Simple_repeat 2 84 0 9 2057 246 32 0 0 chr1 192979596 192979627 -4215805 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 2057 512 253 51 46 chr1 192979743 192980027 -4215405 + LTRIS_Mm LTR ERV1 235 513 -6 9 2057 7247 270 36 31 chr1 192980027 192982588 -4212844 + MURVY-int LTR ERV1 1 2574 -4878 9 2057 6941 279 41 41 chr1 192982587 192985260 -4210172 + RLTR6-int LTR ERV1 4356 7029 -749 9 2057 531 258 75 101 chr1 192985260 192985566 -4209866 + LTRIS5 LTR ERV1 210 507 0 9 2057 395 49 33 0 chr1 192985623 192985684 -4209748 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 9 2057 186 43 0 0 chr1 192985684 192985707 -4209725 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 2057 404 107 0 23 chr1 192985753 192985839 -4209593 + (TCTCTG)n Simple_repeat Simple_repeat 2 85 0 9 2057 237 33 0 0 chr1 192985902 192985932 -4209500 + (TCTCTG)n Simple_repeat Simple_repeat 2 31 0 9 2057 302 139 0 0 chr1 192989349 192989392 -4206040 - HAL1-3A_ME LINE L1 -841 2017 1975 9 2057 653 199 0 6 chr1 192989394 192989556 -4205876 + (TG)n Simple_repeat Simple_repeat 2 162 0 9 2057 239 302 112 71 chr1 192990250 192990446 -4204986 + ORR1E LTR MaLR 3 206 -153 9 2057 3233 46 10 0 chr1 192990545 192990936 -4204496 + MTB LTR MaLR 2 396 -4 9 2057 235 250 279 27 chr1 192991080 192991191 -4204241 - B4A SINE B4 -152 140 2 9 2057 344 89 36 0 chr1 192991208 192991264 -4204168 + (CGTG)n Simple_repeat Simple_repeat 1 58 0 9 2057 545 234 105 38 chr1 192991266 192991399 -4204033 - RSINE1 SINE B4 0 165 24 9 2057 504 143 53 42 chr1 192991584 192991679 -4203753 - B1_Mur1 SINE Alu 0 149 54 9 2057 252 238 10 152 chr1 192991591 192991690 -4203742 - B4 SINE B4 -69 223 139 9 2057 485 128 10 0 chr1 192991894 192991996 -4203436 + (TGG)n Simple_repeat Simple_repeat 2 104 0 9 2057 180 77 0 0 chr1 192992480 192992506 -4202926 + (TTG)n Simple_repeat Simple_repeat 3 28 0 9 2057 572 283 0 28 chr1 192992654 192992796 -4202636 + RSINE1 SINE B4 4 141 -24 9 2057 481 240 60 0 chr1 192993140 192993240 -4202192 + RSINE1 SINE B4 14 119 -46 9 2057 606 207 63 21 chr1 192993398 192993541 -4201891 + B1_Mur1 SINE Alu 1 149 0 9 2057 227 128 21 21 chr1 192993663 192993711 -4201721 + B3A SINE B2 2 49 -149 9 2057 423 0 0 0 chr1 192993729 192993776 -4201656 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 2057 1062 185 9 42 chr1 192993804 192994018 -4201414 + B3 SINE B2 2 208 -8 9 2057 513 234 37 0 chr1 192995899 192996006 -4199426 - RSINE1 SINE B4 -21 144 34 9 2057 486 188 0 0 chr1 192996021 192996122 -4199310 + (TATG)n Simple_repeat Simple_repeat 3 103 0 9 2057 757 221 50 81 chr1 192996428 192996650 -4198782 - B3 SINE B2 -1 215 1 9 2057 1235 109 5 21 chr1 192996796 192996983 -4198449 + B2_Mm2 SINE B2 1 184 -11 9 2057 291 54 0 0 chr1 192997065 192997102 -4198330 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 2057 256 395 8 0 chr1 192997177 192997301 -4198131 + MTEa LTR MaLR 69 193 -166 9 2057 298 241 83 33 chr1 192997486 192997606 -4197826 + MTEa LTR MaLR 252 377 -2 9 2057 369 206 0 0 chr1 192998164 192998266 -4197166 + (CA)n Simple_repeat Simple_repeat 1 102 0 9 2057 1160 210 19 0 chr1 192998266 192998471 -4196961 + B3 SINE B2 8 216 0 9 2057 1017 143 7 0 chr1 192998614 192998761 -4196671 + B1_Mus1 SINE Alu 1 148 0 9 2057 253 312 128 47 chr1 192999629 192999777 -4195655 + L2 LINE L2 2255 2414 -1005 9 2057 206 186 31 78 chr1 193000050 193000114 -4195318 + L2 LINE L2 2810 2870 -549 1 2057 920 211 65 0 chr1 193000480 193000665 -4194767 - B3 SINE B2 -3 213 17 2 2057 360 0 0 0 chr1 193000667 193000707 -4194725 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 2057 387 256 0 0 chr1 193000787 193000904 -4194528 + (CA)n Simple_repeat Simple_repeat 1 117 0 4 2057 1537 278 176 6 chr1 193001488 193002028 -4193404 + Lx8 LINE L1 6708 7339 -134 5 2057 198 0 0 0 chr1 193003159 193003181 -4192251 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 2057 265 239 41 114 chr1 193004996 193005119 -4190313 - MIR3 SINE MIR -3 205 92 7 2057 497 248 10 29 chr1 193005544 193005648 -4189784 + PB1D10 SINE Alu 10 111 -6 8 2057 511 171 61 26 chr1 193006014 193006128 -4189304 + PB1D7 SINE Alu 2 119 -1 9 2057 192 377 62 57 chr1 193011291 193011485 -4183947 + MIRc SINE MIR 35 229 -39 1 2057 308 277 48 48 chr1 193011514 193011639 -4183793 + PB1 SINE Alu 1 125 -2 1 2057 405 0 0 0 chr1 193011746 193011791 -4183641 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 2057 408 233 116 70 chr1 193012962 193013091 -4182341 + B1F SINE Alu 10 144 -5 1 2057 460 202 0 0 chr1 193013092 193013171 -4182261 - PB1D9 SINE Alu -35 85 7 1 2057 309 318 11 0 chr1 193013093 193013181 -4182251 - B4 SINE B4 -123 169 81 1 2057 418 281 135 56 chr1 193013324 193013539 -4181893 - MIRb SINE MIR -8 260 29 1 2057 198 0 0 0 chr1 193014150 193014172 -4181260 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 2057 292 210 138 83 chr1 193015259 193015368 -4180064 + PB1D7 SINE Alu 2 116 -4 1 2057 289 289 0 110 chr1 193015424 193015441 -4179991 + MT2B2 LTR ERVL 153 157 -427 1 2057 462 229 83 0 chr1 193015441 193015550 -4179882 + B1F1 SINE Alu 3 120 0 2 2057 253 128 0 0 chr1 193016838 193016877 -4178555 + B1_Mur1 SINE Alu 92 130 -19 2 2057 583 252 103 7 chr1 193016887 193017023 -4178409 + B1F SINE Alu 1 149 0 2 2057 227 157 20 0 chr1 193017501 193017552 -4177880 + CT-rich Low_complexity Low_complexity 4 55 0 2 2057 335 265 122 41 chr1 193018241 193018357 -4177075 + ID_B1 SINE B4 70 191 -33 2 2057 388 315 28 67 chr1 193019148 193019328 -4176104 + B4 SINE B4 76 248 -44 2 2057 360 0 0 0 chr1 193019345 193019385 -4176047 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 2057 232 356 137 10 chr1 193019420 193019522 -4175910 - ID_B1 SINE B4 -8 216 102 2 2057 361 95 16 16 chr1 193019550 193019614 -4175818 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 2 2057 423 89 0 57 chr1 193019617 193019692 -4175740 - B1_Mus2 SINE Alu -6 143 76 2 2057 405 253 95 105 chr1 193019697 193019887 -4175545 - B3A SINE B2 -7 188 1 3 2057 729 275 40 76 chr1 193020297 193020521 -4174911 + ID_B1 SINE B4 7 222 -2 3 2057 503 234 0 9 chr1 193020784 193020892 -4174540 + 7SK RNA RNA 1 107 -224 3 2057 1419 65 21 5 chr1 193021233 193021420 -4174012 - B2_Mm2 SINE B2 -4 191 2 3 2057 570 186 29 0 chr1 193021665 193021767 -4173665 + PB1D10 SINE Alu 1 105 -12 3 2057 251 246 89 41 chr1 193021780 193021903 -4173529 + Lx8 LINE L1 5767 5895 -1578 3 2057 474 18 0 0 chr1 193022557 193022612 -4172820 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 2057 537 275 0 0 chr1 193022612 193022790 -4172642 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 2057 522 276 50 25 chr1 193022811 193022971 -4172461 - RSINE1 SINE B4 0 165 2 3 2057 225 154 0 0 chr1 193023234 193023273 -4172159 + CT-rich Low_complexity Low_complexity 2 40 0 3 2057 384 286 253 17 chr1 193023281 193023459 -4171973 - ID_B1 SINE B4 -3 221 2 4 2057 562 295 32 21 chr1 193023740 193023927 -4171505 - B3A SINE B2 -27 189 1 4 2057 580 272 7 13 chr1 193024070 193024219 -4171213 - B1F1 SINE Alu -1 148 1 4 2057 570 200 114 8 chr1 193024272 193024403 -4171029 - B1F2 SINE Alu -2 147 3 4 2057 1076 266 42 86 chr1 193024403 193024774 -4170658 + MTEb LTR MaLR 17 372 -7 4 2057 2122 101 18 62 chr1 193024784 193025121 -4170311 + ORR1A2 LTR MaLR 1 322 -5 4 2057 412 256 87 36 chr1 193025584 193025722 -4169710 - ID_B1 SINE B4 0 224 80 4 2057 548 257 0 35 chr1 193026261 193026402 -4169030 - B4A SINE B4 -149 143 8 4 2057 390 42 0 0 chr1 193026404 193026452 -4168980 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 4 2057 183 222 0 0 chr1 193026812 193026857 -4168575 + CT-rich Low_complexity Low_complexity 1 45 0 4 2057 286 228 18 0 chr1 193026860 193026917 -4168515 - ID4 SINE ID -11 72 15 5 2057 468 247 111 0 chr1 193026935 193027097 -4168335 + B3A SINE B2 2 181 -17 5 2057 25 0 0 0 chr1 193027106 193027131 -4168301 + AT_rich Low_complexity Low_complexity 1 25 0 5 2057 294 253 38 51 chr1 193027233 193027312 -4168120 + PB1D7 SINE Alu 35 112 -8 5 2057 308 312 10 0 chr1 193027348 193027444 -4167988 - MER53 DNA hAT -1 192 96 5 2057 255 300 108 39 chr1 193027534 193027611 -4167821 + B4A SINE B4 1 91 -201 5 2057 186 43 0 0 chr1 193027611 193027634 -4167798 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 2057 255 300 108 39 chr1 193027634 193027816 -4167616 + B4A SINE B4 92 278 -14 5 2057 336 94 0 0 chr1 193027820 193027873 -4167559 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 2057 731 182 36 0 chr1 193027960 193028097 -4167335 + B1F SINE Alu 6 147 -2 5 2057 437 266 62 31 chr1 193028285 193028413 -4167019 + B1F SINE Alu 17 148 -1 5 2057 270 241 0 0 chr1 193028535 193028589 -4166843 + MTEb LTR MaLR 322 375 -4 6 2057 390 241 140 18 chr1 193029836 193029950 -4165482 + ID_B1 SINE B4 81 208 -16 6 2057 321 114 49 25 chr1 193030377 193030458 -4164974 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 6 2057 460 323 95 123 chr1 193030458 193030931 -4164501 + L1MEg LINE L1 1055 1514 -4728 6 2057 336 320 137 32 chr1 193031273 193031586 -4163846 + L1MEg LINE L1 3105 3450 -2696 6 2057 272 286 158 11 chr1 193032696 193032880 -4162552 + L1MEg LINE L1 4628 4838 -1308 6 2057 463 323 128 59 chr1 193033474 193033984 -4161448 + L1M2 LINE L1 3081 3625 -2518 6 2057 215 234 0 0 chr1 193034210 193034257 -4161175 + ID4_ SINE ID 35 81 -2 6 2057 279 0 0 0 chr1 193034449 193034480 -4160952 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 6 2057 586 25 12 12 chr1 193034677 193034758 -4160674 + (TTC)n Simple_repeat Simple_repeat 3 83 0 6 2057 414 0 0 0 chr1 193034758 193034804 -4160628 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 2057 756 196 14 14 chr1 193034805 193034950 -4160482 - B1_Mur2 SINE Alu 0 149 5 6 2057 570 215 89 0 chr1 193035130 193035265 -4160167 + B1_Mus2 SINE Alu 1 147 0 7 2057 216 209 0 0 chr1 193035267 193035310 -4160122 + A-rich Low_complexity Low_complexity 1 43 0 7 2057 547 273 127 5 chr1 193035709 193035930 -4159502 + L1M5 LINE L1 5377 5624 -820 7 2057 238 267 0 16 chr1 193036221 193036282 -4159150 + ID_B1 SINE B4 82 141 -83 7 2057 337 258 64 11 chr1 193036243 193036337 -4159095 + PB1D7 SINE Alu 22 120 0 7 2057 595 149 68 0 chr1 193036339 193036487 -4158945 + GA-rich Low_complexity Low_complexity 3 160 0 7 2057 331 191 136 45 chr1 193036734 193036822 -4158610 + PB1D10 SINE Alu 22 117 0 7 2057 430 257 119 0 chr1 193036832 193036941 -4158491 + ID_B1 SINE B4 102 223 -1 7 2057 40 21 0 0 chr1 193037000 193037047 -4158385 + AT_rich Low_complexity Low_complexity 1 47 0 7 2057 195 139 0 0 chr1 193037169 193037205 -4158227 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 2057 26 0 0 0 chr1 193037742 193037768 -4157664 + AT_rich Low_complexity Low_complexity 1 26 0 8 2057 342 276 9 71 chr1 193037987 193038100 -4157332 - PB1D9 SINE Alu 0 120 15 8 2057 905 113 0 0 chr1 193038251 193038375 -4157057 - B1_Mus1 SINE Alu -1 147 24 8 2057 518 314 31 0 chr1 193038434 193038593 -4156839 + B3A SINE B2 20 183 -15 8 2057 225 0 0 0 chr1 193038607 193038632 -4156800 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 8 2057 559 168 0 16 chr1 193038634 193038714 -4156718 + polypurine Low_complexity Low_complexity 3 82 0 8 2057 1245 96 0 0 chr1 193038714 193038892 -4156540 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 8 2057 559 168 0 16 chr1 193038892 193038932 -4156500 + polypurine Low_complexity Low_complexity 83 121 0 8 2057 299 232 0 0 chr1 193038934 193039003 -4156429 + GA-rich Low_complexity Low_complexity 4 72 0 8 2057 527 278 113 0 chr1 193039172 193039366 -4156066 + ID_B1 SINE B4 1 216 -8 8 2057 870 178 167 5 chr1 193039464 193039650 -4155782 + B3 SINE B2 1 216 0 9 2057 532 283 0 0 chr1 193039745 193039865 -4155567 - PB1D7 SINE Alu 0 120 1 9 2057 303 28 0 0 chr1 193039929 193039965 -4155467 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 2057 241 224 104 16 chr1 193040961 193041066 -4154366 - MIRm SINE MIR -118 158 39 9 2057 225 291 53 35 chr1 193041099 193041251 -4154181 - MIRb SINE MIR -23 185 48 9 2057 339 355 65 0 chr1 193042259 193042445 -4152987 - MIRb SINE MIR -34 234 37 9 2057 206 156 0 22 chr1 193042476 193042522 -4152910 + (TTGG)n Simple_repeat Simple_repeat 4 48 0 9 2057 719 253 54 50 chr1 193042522 193042763 -4152669 - L1MC1 LINE L1 -1 6332 6091 9 2057 630 211 20 40 chr1 193042791 193042939 -4152493 - B1F SINE Alu -4 145 1 9 2057 272 250 88 0 chr1 193042990 193043058 -4152374 + PB1D7 SINE Alu 18 91 -29 9 2057 608 216 0 25 chr1 193042997 193043116 -4152316 + ID_B1 SINE B4 109 224 0 1 2057 699 240 119 39 chr1 193043134 193043405 -4152027 - L1MC1 LINE L1 -305 6028 5742 9 2057 430 267 130 0 chr1 193043405 193043536 -4151896 + B1F SINE Alu 1 148 -1 1 2057 557 162 17 6 chr1 193043779 193043953 -4151479 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 2057 188 175 16 0 chr1 193043967 193044030 -4151402 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 2057 405 298 19 9 chr1 193044213 193044318 -4151114 + PB1D10 SINE Alu 3 108 -9 1 2057 306 357 93 0 chr1 193044318 193044341 -4151091 + ID_B1 SINE B4 84 223 -1 1 2057 462 331 7 29 chr1 193044403 193044540 -4150892 - B1F1 SINE Alu -15 134 1 1 2057 594 321 28 60 chr1 193044554 193044839 -4150593 + MLT1A LTR MaLR 85 360 -14 1 2057 1237 251 100 28 chr1 193044845 193045205 -4150227 - MTD LTR MaLR -33 386 1 1 2057 570 299 0 0 chr1 193045394 193045521 -4149911 + RSINE1 SINE B4 3 129 -36 1 2057 327 241 175 17 chr1 193046775 193046952 -4148480 - B3 SINE B2 -11 205 1 1 2057 691 229 36 125 chr1 193047007 193047142 -4148290 - L1MA4 LINE L1 -362 5938 5809 1 2057 393 275 100 7 chr1 193047142 193047292 -4148140 + RSINE1 SINE B4 2 165 0 1 2057 691 237 33 116 chr1 193047292 193047479 -4147953 - L1MA4 LINE L1 -492 5808 5644 1 2057 713 109 449 0 chr1 193049793 193049940 -4145492 + B3 SINE B2 2 214 -2 1 2057 1170 162 46 0 chr1 193050005 193050221 -4145211 - URR1A DNA MER1_type 0 226 1 1 2057 584 82 9 35 chr1 193050233 193050347 -4145085 - L1Md_F2 LINE L1 -1 6581 6471 1 2057 22 0 0 0 chr1 193050415 193050437 -4144995 + AT_rich Low_complexity Low_complexity 1 22 0 1 2057 181 344 119 8 chr1 193050543 193050669 -4144763 - MIR SINE MIR -120 142 3 1 2057 483 191 11 11 chr1 193051065 193051160 -4144272 - PB1D10 SINE Alu -8 109 15 1 2057 313 315 120 0 chr1 193051274 193051382 -4144050 + B1F SINE Alu 1 121 -28 1 2057 474 150 12 0 chr1 193051305 193051385 -4144047 + ID_B1 SINE B4 122 202 -22 1 2057 627 88 0 0 chr1 193051390 193051481 -4143951 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 2057 452 308 22 30 chr1 193051498 193051632 -4143800 + RSINE1 SINE B4 2 134 -31 1 2057 503 268 99 13 chr1 193052063 193052214 -4143218 + B4 SINE B4 1 164 -128 1 2057 633 252 23 0 chr1 193052270 193052401 -4143031 + ID_B1 SINE B4 70 203 -21 1 2057 614 269 152 25 chr1 193052586 193052784 -4142648 + ID_B1 SINE B4 2 224 0 1 2057 670 179 20 33 chr1 193052794 193052944 -4142488 + B1_Mus1 SINE Alu 1 148 0 1 2057 439 224 46 9 chr1 193053158 193053266 -4142166 - PB1D7 SINE Alu -8 112 1 1 2057 642 206 184 69 chr1 193053592 193053853 -4141579 + B4A SINE B4 2 292 0 1 2057 231 36 0 0 chr1 193053864 193053892 -4141540 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 2057 2690 264 125 63 chr1 193055159 193056285 -4139147 - Lx8 LINE L1 -183 7290 6095 1 2057 2874 132 172 14 chr1 193056303 193056796 -4138636 - RMER15 LTR ERVL 0 575 5 1 2057 260 156 0 43 chr1 193057709 193057756 -4137676 + B1F1 SINE Alu 78 122 -27 1 2057 651 221 9 0 chr1 193057845 193057958 -4137474 - B1_Mur1 SINE Alu -34 115 2 1 2057 2760 143 72 6 chr1 193058056 193058542 -4136890 - RLTR28 LTR ERVL -6 518 1 1 2057 649 254 16 62 chr1 193059001 193059194 -4136238 + MTEb-int LTR MaLR 328 511 -1069 1 2057 1016 220 84 56 chr1 193059194 193059478 -4135954 + B4A SINE B4 1 292 0 1 2057 357 291 0 0 chr1 193059489 193059599 -4135833 + (CA)n Simple_repeat Simple_repeat 2 111 0 1 2057 3495 255 125 17 chr1 193059599 193060593 -4134839 + MTEb-int LTR MaLR 478 1578 -2 1 2057 876 265 128 60 chr1 193060597 193060860 -4134572 + MTEb LTR MaLR 3 292 -87 1 2057 1794 186 45 17 chr1 193060860 193061216 -4134216 - ORR1D2 LTR MaLR -4 366 1 1 2057 876 265 128 60 chr1 193061216 193061305 -4134127 + MTEb LTR MaLR 293 379 0 1 2057 232 172 17 17 chr1 193061314 193061373 -4134059 + CT-rich Low_complexity Low_complexity 4 62 0 1 2057 752 217 123 41 chr1 193061568 193061837 -4133595 + B4A SINE B4 2 292 0 1 2057 218 173 67 0 chr1 193061905 193062009 -4133423 + (CATA)n Simple_repeat Simple_repeat 1 111 0 1 2057 632 211 135 0 chr1 193062108 193062241 -4133191 - RSINE1 SINE B4 -12 153 3 1 2057 317 200 153 82 chr1 193062294 193062392 -4133040 - PB1D10 SINE Alu -1 116 12 1 2057 280 306 118 0 chr1 193062318 193062403 -4133029 - ID_B1 SINE B4 -49 175 81 1 2057 227 250 13 40 chr1 193062346 193062421 -4133011 + YREP_Mm Unknown Unknown 260 332 -1480 1 2057 677 245 18 30 chr1 193062927 193063091 -4132341 + RSINE1 SINE B4 2 163 -2 1 2057 619 235 34 83 chr1 193063829 193064033 -4131399 - B3A SINE B2 -4 194 1 1 2057 597 143 32 0 chr1 193064038 193064164 -4131268 + CT-rich Low_complexity Low_complexity 1 130 0 1 2057 858 155 7 40 chr1 193064164 193064312 -4131120 - B1_Mur3 SINE Alu -5 144 2 1 2057 1194 138 21 11 chr1 193064375 193064566 -4130866 - ORR1D1 LTR MaLR 0 374 182 1 2057 240 100 0 0 chr1 193064566 193064606 -4130826 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 1 2057 1219 134 11 0 chr1 193064827 193065014 -4130418 + B2_Mm1a SINE B2 2 190 -3 1 2057 371 252 39 29 chr1 193065843 193065945 -4129487 + RSINE1 SINE B4 3 105 -60 1 2057 189 107 0 0 chr1 193066305 193066333 -4129099 + (GGA)n Simple_repeat Simple_repeat 1 28 0 1 2057 306 0 0 0 chr1 193066737 193066771 -4128661 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 2057 22 0 0 0 chr1 193066871 193066893 -4128539 + AT_rich Low_complexity Low_complexity 1 22 0 1 2057 289 298 13 71 chr1 193068049 193068240 -4127192 + MIR SINE MIR 74 254 -14 1 2057 984 149 7 0 chr1 193068908 193069049 -4126383 - B1_Mus2 SINE Alu -5 142 1 1 2058 464 271 9 9 chr1 193069146 193069254 -4126178 - PB1D7 SINE Alu -1 119 12 1 2058 747 240 75 47 chr1 193069590 193069804 -4125628 + MTEb LTR MaLR 158 377 -2 1 2058 3789 138 62 43 chr1 193070435 193071249 -4124183 - RLTR13D2 LTR ERVK 0 1023 1 1 2058 781 179 20 52 chr1 193071267 193071420 -4124012 - B1_Mur1 SINE Alu -1 148 1 1 2058 257 260 0 9 chr1 193071826 193071931 -4123501 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 2058 296 264 17 6 chr1 193071992 193072167 -4123265 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 2058 534 274 13 58 chr1 193072591 193072746 -4122686 - B1F1 SINE Alu -1 148 1 1 2058 181 171 0 28 chr1 193073060 193073096 -4122336 + L2b LINE L2 3088 3122 -253 1 2058 1325 284 76 55 chr1 193073380 193073559 -4121873 + MT2A LTR ERVL 3 180 -353 1 2058 180 0 0 0 chr1 193073559 193073579 -4121853 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 2058 1325 284 76 55 chr1 193073579 193073910 -4121522 + MT2A LTR ERVL 181 524 -9 1 2058 742 284 72 0 chr1 193074393 193074601 -4120831 - ID_B1 SINE B4 0 224 2 1 2058 204 121 0 29 chr1 193075171 193075205 -4120227 + GA-rich Low_complexity Low_complexity 3 35 0 1 2058 213 216 0 0 chr1 193075246 193075283 -4120149 + B3A SINE B2 7 43 -155 1 2058 490 274 71 104 chr1 193075624 193075836 -4119596 + B4A SINE B4 82 286 -6 1 2058 288 53 0 0 chr1 193075840 193075878 -4119554 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 2058 441 0 0 0 chr1 193076178 193076227 -4119205 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 2058 315 0 0 0 chr1 193076227 193076261 -4119171 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 2058 180 300 154 11 chr1 193076623 193076714 -4118718 + MIRb SINE MIR 90 193 -75 1 2058 1139 48 0 58 chr1 193076853 193077009 -4118423 - B1_Mus2 SINE Alu 0 147 1 1 2058 307 41 0 39 chr1 193077197 193077248 -4118184 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 1 2058 467 254 100 0 chr1 193077258 193077368 -4118064 - RSINE1 SINE B4 -29 136 16 1 2058 320 293 30 20 chr1 193077362 193077463 -4117969 - B4A SINE B4 -188 104 3 1 2058 680 219 0 0 chr1 193077508 193077627 -4117805 - B1_Mur1 SINE Alu -18 131 13 1 2058 272 276 29 102 chr1 193077517 193077654 -4117778 - MT2B LTR ERVL -323 278 152 1 2058 3416 40 5 0 chr1 193077809 193078207 -4117225 + MTB LTR MaLR 1 400 0 1 2058 331 289 130 37 chr1 193078959 193079067 -4116365 - RSINE1 SINE B4 -46 119 2 1 2058 519 215 22 49 chr1 193079083 193079223 -4116209 - B3 SINE B2 -27 189 50 1 2058 236 289 119 56 chr1 193079253 193079396 -4116036 - L2a LINE L2 -20 3406 3255 1 2058 616 152 45 0 chr1 193079775 193079887 -4115545 - PB1D10 SINE Alu 0 117 1 1 2058 190 340 130 34 chr1 193081364 193081510 -4113922 + MIRc SINE MIR 29 188 -80 1 2058 301 321 152 0 chr1 193081681 193081822 -4113610 - MIRc SINE MIR -106 162 3 1 2058 1227 208 95 75 chr1 193083071 193083419 -4112013 - ORR1E LTR MaLR 0 359 5 1 2058 562 219 86 33 chr1 193083423 193083574 -4111858 + B3A SINE B2 38 196 -2 1 2058 180 160 157 20 chr1 193083963 193084014 -4111418 - MIRb SINE MIR -3 265 208 1 2058 856 257 69 0 chr1 193084223 193084425 -4111007 - B3 SINE B2 0 216 1 1 2058 752 251 16 22 chr1 193085110 193085293 -4110139 + ID_B1 SINE B4 43 224 0 1 2058 324 70 0 0 chr1 193085293 193085336 -4110096 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 2058 232 313 77 63 chr1 193085342 193085485 -4109947 + MIR SINE MIR 16 160 -102 1 2058 748 212 0 0 chr1 193086232 193086369 -4109063 + B1_Mur3 SINE Alu 1 137 -12 1 2058 306 125 0 0 chr1 193086369 193086417 -4109015 + (TCC)n Simple_repeat Simple_repeat 2 49 0 1 2058 339 104 60 17 chr1 193086597 193086714 -4108718 + (TA)n Simple_repeat Simple_repeat 1 122 0 1 2058 27 49 0 0 chr1 193086735 193086776 -4108656 + AT_rich Low_complexity Low_complexity 1 41 0 1 2058 1275 109 5 5 chr1 193086785 193086978 -4108454 - B2_Mm2 SINE B2 -1 194 2 1 2058 270 333 35 44 chr1 193087617 193087730 -4107702 - MIRm SINE MIR -117 151 40 2 2058 298 221 29 0 chr1 193087860 193087964 -4107468 + (TATG)n Simple_repeat Simple_repeat 3 109 0 2 2058 280 330 76 8 chr1 193088246 193088365 -4107067 - MER20 DNA MER1_type 0 219 93 2 2058 735 278 172 31 chr1 193088689 193089102 -4106330 - RLTR12B LTR ERVK -11 517 47 2 2058 958 256 70 147 chr1 193089757 193090167 -4105265 + RMER5 LTR ERV1 1 389 -145 2 2058 888 225 104 10 chr1 193090167 193090360 -4105072 + ID_B1 SINE B4 2 212 -12 2 2058 958 256 70 147 chr1 193090360 193090466 -4104966 + RMER5 LTR ERV1 390 477 -57 2 2058 3345 162 39 4 chr1 193091157 193091715 -4103717 - RLTR20A2 LTR ERVK 0 578 1 2 2058 210 345 58 0 chr1 193092740 193092827 -4102605 + L2a LINE L2 3006 3097 -329 2 2058 202 290 176 8 chr1 193092970 193093095 -4102337 + L2a LINE L2 3196 3341 -85 2 2058 2969 57 52 3 chr1 193094200 193094584 -4100848 - MTB_Mm LTR MaLR -4 403 1 2 2058 442 273 104 68 chr1 193094636 193094856 -4100576 - ORR1E LTR MaLR -131 228 1 2 2058 1078 158 184 0 chr1 193094960 193095150 -4100282 + URR1B DNA MER1_type 1 225 0 2 2058 397 241 27 81 chr1 193095158 193095307 -4100125 + MLT1A1 LTR MaLR 268 408 0 2 2058 2780 128 27 5 chr1 193095569 193095977 -4099455 + MTC LTR MaLR 5 421 0 2 2058 834 185 0 20 chr1 193096323 193096472 -4098960 - B1_Mus1 SINE Alu 0 148 3 2 2058 537 284 127 12 chr1 193096484 193096822 -4098610 - L1MC4 LINE L1 -499 7543 7167 2 2058 198 171 0 0 chr1 193096869 193096910 -4098522 + (CTCA)n Simple_repeat Simple_repeat 4 44 0 2 2058 730 232 42 73 chr1 193097060 193097320 -4098112 + RLTR15 LTR ERVK 1 252 -107 2 2058 263 233 17 0 chr1 193097393 193097453 -4097979 - MER2 DNA MER2_type -158 187 127 2 2058 299 256 89 89 chr1 193097737 193097883 -4097549 - ORR1E LTR MaLR -175 184 39 2 2058 352 333 86 39 chr1 193097891 193098147 -4097285 - MLT1L LTR MaLR -37 573 306 2 2058 305 277 45 30 chr1 193098572 193098706 -4096726 - MLT1L LTR MaLR -335 177 42 2 2058 227 184 0 0 chr1 193098726 193098764 -4096668 - 5S rRNA rRNA -83 38 1 2 2058 745 243 21 42 chr1 193099592 193099781 -4095651 - RMER30 DNA MER1_type -17 185 1 2 2058 525 322 5 76 chr1 193099800 193099848 -4095584 + ID_B1 SINE B4 40 223 -1 2 2058 636 232 13 53 chr1 193099848 193099998 -4095434 + B1F SINE Alu 6 149 0 2 2058 602 307 0 0 chr1 193100270 193100397 -4095035 + RSINE1 SINE B4 3 129 -36 2 2058 605 80 0 11 chr1 193100399 193100488 -4094944 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 2058 21 36 0 0 chr1 193100570 193100598 -4094834 + AT_rich Low_complexity Low_complexity 1 28 0 2 2058 505 211 17 10 chr1 193100619 193100749 -4094683 + B1_Mur3 SINE Alu 1 107 -13 2 2058 897 146 14 0 chr1 193100966 193101110 -4094322 - B1_Mur3 SINE Alu 0 149 4 2 2058 319 348 68 37 chr1 193101233 193101394 -4094038 - MIRb SINE MIR -77 191 26 2 2058 559 271 20 14 chr1 193102069 193102215 -4093217 - MER5A DNA MER1_type -1 188 42 2 2058 580 253 62 57 chr1 193102745 193102921 -4092511 + B4A SINE B4 116 292 0 2 2058 230 229 0 14 chr1 193102921 193102992 -4092440 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 2058 1359 40 62 0 chr1 193103689 193103866 -4091566 - MTA_Mm LTR MaLR 0 396 209 2 2058 773 266 32 0 chr1 193103873 193104061 -4091371 - B3 SINE B2 -21 195 2 2 2058 584 242 28 140 chr1 193104064 193104273 -4091159 + MTE2a LTR MaLR 4 210 -209 2 2058 309 172 0 0 chr1 193104273 193104331 -4091101 + B3 SINE B2 2 59 -157 2 2058 387 206 66 19 chr1 193104422 193104537 -4090895 + MTE2a LTR MaLR 258 385 -34 2 2058 247 193 38 170 chr1 193105626 193105732 -4089700 - MLT1A0 LTR MaLR -272 93 2 2 2058 230 245 20 0 chr1 193106402 193106451 -4088981 - B3 SINE B2 -119 97 48 2 2058 625 191 0 0 chr1 193106824 193106929 -4088503 + B1_Mur2 SINE Alu 41 145 -4 2 2058 197 33 33 0 chr1 193107960 193107990 -4087442 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 2058 356 242 0 0 chr1 193108103 193108169 -4087263 + RSINE1 SINE B4 88 153 -12 2 2058 288 0 0 0 chr1 193108208 193108240 -4087192 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 2058 214 149 21 21 chr1 193108244 193108292 -4087140 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 2058 834 237 30 20 chr1 193108729 193108931 -4086501 - B3 SINE B2 -12 204 1 2 2058 4432 149 47 22 chr1 193109167 193109385 -4086047 + RLTR25A LTR ERVK 109 326 -777 2 2058 351 0 0 0 chr1 193109385 193109424 -4086008 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2 2058 4432 161 46 24 chr1 193109424 193110094 -4085338 + RLTR25A LTR ERVK 327 1064 -39 2 2058 321 218 128 0 chr1 193110107 193110185 -4085247 - PB1 SINE Alu -29 98 11 2 2058 1839 154 34 28 chr1 193111143 193111470 -4083962 + ORR1A4 LTR MaLR 1 329 0 2 2058 1368 175 14 0 chr1 193111660 193111883 -4083549 - URR1A DNA MER1_type 0 226 1 2 2058 330 291 208 34 chr1 193111995 193112173 -4083259 + MLT1I LTR MaLR 201 409 -2 2 2058 710 250 42 0 chr1 193113818 193113986 -4081446 - MTEa LTR MaLR -198 181 7 2 2058 929 178 7 0 chr1 193114085 193114231 -4081201 + B1_Mus2 SINE Alu 1 147 0 2 2058 1278 256 44 22 chr1 193114290 193114650 -4080782 - ORR1D2 LTR MaLR -2 368 1 2 2058 214 225 25 0 chr1 193114653 193114733 -4080699 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 2058 1647 47 0 0 chr1 193114958 193115150 -4080282 + B2_Mm1t SINE B2 2 193 0 2 2058 342 252 19 37 chr1 193115357 193115464 -4079968 + B1_Mur4 SINE Alu 10 114 -36 2 2058 615 269 56 46 chr1 193115471 193115666 -4079766 + B3A SINE B2 1 197 -1 2 2058 721 130 9 0 chr1 193115669 193115777 -4079655 + B1_Mur2 SINE Alu 1 109 -40 2 2058 203 197 0 16 chr1 193115790 193115829 -4079603 + CT-rich Low_complexity Low_complexity 25 62 0 2 2058 966 83 36 0 chr1 193115829 193115997 -4079435 + (TCC)n Simple_repeat Simple_repeat 3 176 0 2 2058 203 197 0 16 chr1 193115997 193116019 -4079413 + polypyrimidine Low_complexity Low_complexity 3 24 0 2 2058 180 342 13 13 chr1 193116930 193117007 -4078425 - MIR SINE MIR -101 161 85 2 2058 192 359 0 0 chr1 193117099 193117163 -4078269 - MIRb SINE MIR -57 211 148 2 2058 2935 49 6 0 chr1 193117277 193117621 -4077811 + ORR1A1 LTR MaLR 1 346 0 2 2058 830 289 88 21 chr1 193117754 193118112 -4077320 + MTE2a LTR MaLR 13 405 -14 2 2058 301 248 194 37 chr1 193118449 193118583 -4076849 - HAL1-3A_ME LINE L1 -420 2438 2284 2 2058 343 184 43 14 chr1 193118589 193118727 -4076705 + CT-rich Low_complexity Low_complexity 4 145 0 2 2058 468 311 47 30 chr1 193118743 193118912 -4076520 - ID_B1 SINE B4 -8 216 45 2 2058 1144 220 5 0 chr1 193118970 193119179 -4076253 - B3 SINE B2 -5 211 2 2 2058 925 153 11 0 chr1 193119415 193119591 -4075841 + CT-rich Low_complexity Low_complexity 2 179 0 2 2058 200 188 0 0 chr1 193119594 193119626 -4075806 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 2058 180 216 0 0 chr1 193121069 193121106 -4074326 + L2 LINE L2 2541 2577 -842 2 2058 375 224 0 0 chr1 193121126 193121269 -4074163 + (CA)n Simple_repeat Simple_repeat 2 144 0 2 2058 345 328 53 87 chr1 193121541 193121748 -4073684 - B4A SINE B4 -92 200 1 2 2058 299 266 116 8 chr1 193122617 193122746 -4072686 + L1MB1 LINE L1 5944 6086 -103 2 2058 450 184 92 0 chr1 193122767 193122854 -4072578 + ID_B1 SINE B4 121 215 -9 2 2058 417 228 197 0 chr1 193122969 193123096 -4072336 + MTEa LTR MaLR 1 152 -227 2 2058 348 276 28 28 chr1 193124403 193124582 -4070850 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 2058 325 285 144 85 chr1 193124662 193124850 -4070582 - B4 SINE B4 0 292 94 2 2058 251 218 128 0 chr1 193124843 193124921 -4070511 + RMER20B LTR ERVK 312 399 -228 2 2058 294 78 21 72 chr1 193125044 193125141 -4070291 + T-rich Low_complexity Low_complexity 4 95 0 2 2058 1137 50 36 0 chr1 193125149 193125289 -4070143 - B1_Mus2 SINE Alu -2 145 1 2 2058 1486 63 0 35 chr1 193125289 193125486 -4069946 - B2_Mm2 SINE B2 -3 192 2 2 2058 809 168 0 6 chr1 193126981 193127161 -4068271 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 2058 657 218 3 0 chr1 193127193 193127501 -4067931 + (CA)n Simple_repeat Simple_repeat 1 309 0 2 2058 940 166 7 0 chr1 193127540 193127685 -4067747 - B1_Mus2 SINE Alu -1 146 1 2 2058 329 219 418 13 chr1 193127709 193127862 -4067570 - B3 SINE B2 0 216 2 2 2058 333 0 0 0 chr1 193128357 193128394 -4067038 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 2058 503 210 52 82 chr1 193128519 193128654 -4066778 + ID_B1 SINE B4 94 224 0 2 2058 351 0 0 0 chr1 193129797 193129836 -4065596 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 2058 827 236 56 5 chr1 193129836 193130021 -4065411 - ID_B1 SINE B4 -12 212 17 2 2058 378 0 0 0 chr1 193130021 193130063 -4065369 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 2058 285 100 0 0 chr1 193130076 193130126 -4065306 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 2058 616 240 45 52 chr1 193130126 193130280 -4065152 - B3 SINE B2 -17 199 47 2 2058 493 274 116 7 chr1 193131131 193131278 -4064154 - U1 snRNA snRNA -2 163 1 2 2058 951 216 5 40 chr1 193132006 193132204 -4063228 + B3A SINE B2 5 195 -3 2 2058 1042 150 26 11 chr1 193132317 193132506 -4062926 + B2_Mm2 SINE B2 2 193 -2 2 2058 3522 18 5 2 chr1 193132651 193133045 -4062387 - MTA_Mm LTR MaLR 0 396 2 2 2058 958 62 0 15 chr1 193133045 193133175 -4062257 - B1_Mus2 SINE Alu -15 132 5 2 2058 306 0 0 0 chr1 193133486 193133520 -4061912 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 2058 593 206 127 0 chr1 193133611 193133737 -4061695 + B1_Mur1 SINE Alu 1 142 -7 3 2058 1475 72 0 44 chr1 193134130 193134333 -4061099 + B2_Mm2 SINE B2 1 194 -1 3 2058 336 151 0 19 chr1 193134500 193134600 -4060832 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 2058 479 95 14 0 chr1 193134600 193134674 -4060758 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 2058 236 254 0 34 chr1 193134674 193134741 -4060691 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 2058 506 173 18 6 chr1 193134754 193134917 -4060515 + (TG)n Simple_repeat Simple_repeat 2 166 0 3 2058 973 56 80 0 chr1 193135794 193135919 -4059513 + B1_Mus1 SINE Alu 3 137 -11 3 2058 438 171 0 64 chr1 193135966 193136060 -4059372 + MTD LTR MaLR 323 410 -9 3 2058 443 226 39 0 chr1 193136259 193136361 -4059071 - PB1D10 SINE Alu -10 107 2 3 2058 438 153 37 34 chr1 193137370 193137479 -4057953 + B1_Mur2 SINE Alu 1 139 -10 3 2058 390 42 0 0 chr1 193137499 193137547 -4057885 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 2058 513 0 0 0 chr1 193137547 193137604 -4057828 + (GAA)n Simple_repeat Simple_repeat 3 59 0 3 2058 1044 114 11 6 chr1 193137604 193137781 -4057651 + (GGA)n Simple_repeat Simple_repeat 3 180 0 3 2058 912 201 214 48 chr1 193138551 193138963 -4056469 + RMER17C-int LTR ERVK 1508 1988 -1250 3 2058 668 136 61 0 chr1 193138971 193139103 -4056329 + RMER17C-int LTR ERVK 2204 2343 -895 3 2058 828 132 115 26 chr1 193139100 193139256 -4056176 + RMER17C-int LTR ERVK 2533 2702 -536 3 2058 2029 161 64 8 chr1 193139280 193139669 -4055763 + RMER17C-int LTR ERVK 2806 3216 -22 3 2058 1069 50 0 0 chr1 193139708 193139849 -4055583 - B1_Mm SINE Alu 0 147 7 3 2058 982 198 41 37 chr1 193139872 193140419 -4055013 + RMER17C LTR ERVK 80 439 -519 3 2058 1264 124 0 44 chr1 193140756 193140959 -4054473 + B2_Mm2 SINE B2 2 195 0 3 2058 924 142 30 12 chr1 193140961 193141125 -4054307 - URR1B DNA MER1_type 0 225 59 3 2058 204 126 45 48 chr1 193141292 193141336 -4054096 + MIRm SINE MIR 121 162 -106 3 2058 360 309 0 4 chr1 193142083 193142195 -4053237 - B1F1 SINE Alu -5 112 4 3 2058 959 107 6 22 chr1 193142209 193142390 -4053042 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 3 2058 265 291 11 23 chr1 193142395 193142447 -4052985 + polypyrimidine Low_complexity Low_complexity 39 89 0 3 2058 1053 106 0 22 chr1 193142447 193142630 -4052802 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 3 2058 265 291 11 23 chr1 193142630 193142665 -4052767 + polypyrimidine Low_complexity Low_complexity 4 38 0 3 2058 726 213 124 0 chr1 193143012 193143181 -4052251 + B3 SINE B2 27 216 0 3 2058 830 283 96 73 chr1 193143663 193144006 -4051426 - MTEa LTR MaLR -28 351 1 3 2058 219 301 69 0 chr1 193144008 193144112 -4051320 - MIRm SINE MIR -106 162 58 3 2058 674 200 57 0 chr1 193144216 193144356 -4051076 + ORR1B2 LTR MaLR 5 152 -215 3 2058 3900 148 96 71 chr1 193144356 193145197 -4050235 + RMER19B LTR ERVK 1 862 -40 3 2058 1410 174 4 4 chr1 193145209 193145446 -4049986 + ORR1B2 LTR MaLR 131 367 0 3 2058 545 260 130 0 chr1 193145557 193145711 -4049721 + RMER30 DNA MER1_type 7 180 -22 3 2058 861 247 63 3 chr1 193145850 193146160 -4049272 + ORR1D1 LTR MaLR 1 368 -6 3 2058 305 233 274 0 chr1 193146155 193146301 -4049131 - MLT1C LTR MaLR -281 186 1 3 2058 1248 54 0 0 chr1 193146421 193146568 -4048864 + B1_Mus1 SINE Alu 2 148 0 3 2058 255 218 133 0 chr1 193146734 193146816 -4048616 + B4 SINE B4 1 90 -202 3 2058 1633 215 24 102 chr1 193146816 193147324 -4048108 + Lx5 LINE L1 6580 7047 -3 3 2058 243 45 43 22 chr1 193147352 193147398 -4048034 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 2058 1084 58 65 0 chr1 193147763 193147902 -4047530 - B1_Mus1 SINE Alu 0 148 1 3 2058 1802 171 116 11 chr1 193147932 193148304 -4047128 - MTD LTR MaLR -8 411 1 3 2058 324 325 40 24 chr1 193148974 193149100 -4046332 + RMER10B LTR ERVL 271 398 0 3 2058 213 326 30 50 chr1 193149427 193149527 -4045905 + MIRb SINE MIR 125 222 -46 3 2058 186 47 44 44 chr1 193150963 193151008 -4044424 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 2058 389 248 110 8 chr1 193151065 193151084 -4044348 + B1F SINE Alu 8 137 -12 3 2058 542 192 30 0 chr1 193151084 193151183 -4044249 + ID_B1 SINE B4 111 212 -12 3 2058 331 246 158 93 chr1 193151670 193151917 -4043515 + MLT1C LTR MaLR 137 399 -68 3 2058 591 228 41 0 chr1 193152836 193152959 -4042473 - RSINE1 SINE B4 -36 129 2 3 2058 1701 36 0 0 chr1 193153259 193153452 -4041980 - B2_Mm1t SINE B2 0 193 1 3 2058 1276 111 26 16 chr1 193153521 193153713 -4041719 - B2_Mm2 SINE B2 0 195 2 3 2058 218 297 147 88 chr1 193153821 193153870 -4041562 - B2_Mm1a SINE B2 -11 182 3 3 2058 582 231 41 0 chr1 193153870 193153991 -4041441 - RSINE1 SINE B4 -36 129 4 3 2058 1003 123 43 12 chr1 193153994 193154158 -4041274 - B2_Mm1t SINE B2 -23 170 2 3 2058 716 274 100 13 chr1 193154166 193154571 -4040861 - L1MA6 LINE L1 -2 6298 5826 3 2058 358 217 132 0 chr1 193154576 193154659 -4040773 - ID_B1 SINE B4 -5 219 126 3 2058 615 228 6 64 chr1 193154996 193155169 -4040263 - B4 SINE B4 -87 205 43 3 2058 285 301 69 14 chr1 193155177 193155322 -4040110 - L1MA6 LINE L1 -545 5746 5594 3 2058 315 0 0 0 chr1 193155329 193155364 -4040068 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 2058 242 320 67 19 chr1 193155501 193155606 -4039826 - PB1D10 SINE Alu -7 110 1 3 2058 532 269 27 14 chr1 193155636 193155783 -4039649 + B3A SINE B2 43 191 -7 3 2058 298 324 58 64 chr1 193155907 193156095 -4039337 - L1M2 LINE L1 -4257 2592 2406 3 2058 223 255 0 0 chr1 193156095 193156142 -4039290 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 3 2058 202 250 33 0 chr1 193156154 193156214 -4039218 + CT-rich Low_complexity Low_complexity 1 62 0 3 2058 394 206 54 9 chr1 193156220 193156346 -4039086 - PB1D10 SINE Alu -21 127 1 3 2058 349 311 16 63 chr1 193156725 193156761 -4038671 - B4 SINE B4 -36 256 122 3 2058 718 80 0 126 chr1 193156761 193156904 -4038528 - B1_Mur4 SINE Alu -24 126 2 3 2058 263 277 183 17 chr1 193156947 193157127 -4038305 - L1M2 LINE L1 -4978 1871 1662 3 2058 483 244 110 0 chr1 193157236 193157363 -4038069 - MTEa LTR MaLR -228 151 11 3 2058 445 299 61 42 chr1 193157614 193157827 -4037605 - L1M2 LINE L1 -3707 3138 2922 3 2058 1464 72 0 6 chr1 193157847 193158029 -4037403 - B2_Mm2 SINE B2 -14 181 1 3 2058 440 216 199 19 chr1 193158032 193158188 -4037244 - B2_Mm2 SINE B2 -11 184 1 3 2058 339 283 177 61 chr1 193158443 193158770 -4036662 + MTEa LTR MaLR 1 365 -14 3 2058 361 287 75 13 chr1 193158890 193159049 -4036383 - L1M2 LINE L1 -4422 2427 2259 3 2058 674 197 7 0 chr1 193159194 193159346 -4036086 + CT-rich Low_complexity Low_complexity 4 156 0 3 2058 785 83 0 0 chr1 193159346 193159455 -4035977 - B1_Mus1 SINE Alu 0 148 40 3 2058 396 103 0 0 chr1 193160467 193160525 -4034907 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 2058 891 172 6 0 chr1 193160526 193160683 -4034749 - B3 SINE B2 -58 158 1 3 2058 1168 123 0 27 chr1 193160694 193160878 -4034554 - B2_Mm2 SINE B2 -16 179 1 3 2058 264 283 58 70 chr1 193160908 193161064 -4034368 - MT2A LTR ERVL 0 533 380 3 2058 534 282 43 37 chr1 193162140 193162328 -4033104 - MTEa LTR MaLR -8 371 183 3 2058 744 93 113 50 chr1 193163310 193163469 -4031963 - B2_Mm1t SINE B2 0 193 25 3 2058 844 230 141 24 chr1 193163471 193163761 -4031671 - ORR1D1 LTR MaLR -50 324 1 3 2058 1498 160 110 51 chr1 193165208 193165563 -4029869 + ORR1C1 LTR MaLR 1 376 -2 3 2058 225 254 80 53 chr1 193166750 193166825 -4028607 + PB1 SINE Alu 51 127 0 3 2058 1360 106 21 0 chr1 193166838 193167027 -4028405 + B2_Mm2 SINE B2 1 193 -2 3 2058 240 218 44 33 chr1 193167226 193167316 -4028116 - MLT1J-int LTR MaLR -500 887 797 3 2058 1308 44 38 6 chr1 193168251 193168434 -4026998 + B2_Mm2 SINE B2 7 195 0 3 2058 287 286 64 50 chr1 193169898 193170038 -4025394 - Lx8 LINE L1 -400 7073 6932 3 2058 534 218 0 0 chr1 193170052 193170162 -4025270 - PB1D10 SINE Alu -7 110 1 3 2058 1401 73 10 5 chr1 193171152 193171344 -4024088 - B2_Mm1t SINE B2 0 193 1 3 2058 288 0 0 0 chr1 193172188 193172220 -4023212 + (A)n Simple_repeat Simple_repeat 1 32 0 3 2058 626 192 6 18 chr1 193172762 193172926 -4022506 + CT-rich Low_complexity Low_complexity 4 165 0 3 2058 223 289 13 26 chr1 193172972 193173050 -4022382 + ID4 SINE ID 7 83 0 3 2058 1627 42 0 0 chr1 193175175 193175366 -4020066 - B2_Mm1a SINE B2 -1 192 2 3 2058 281 174 203 0 chr1 193178298 193178382 -4017050 + PB1D10 SINE Alu 8 111 -9 3 2058 21 57 0 0 chr1 193178745 193178780 -4016652 + AT_rich Low_complexity Low_complexity 1 35 0 3 2058 23 0 0 0 chr1 193178873 193178896 -4016536 + AT_rich Low_complexity Low_complexity 1 23 0 3 2058 387 229 41 20 chr1 193178987 193179085 -4016347 + PB1D10 SINE Alu 1 100 -17 3 2058 275 244 0 131 chr1 193179328 193179357 -4016075 - BC1_Mm scRNA scRNA -65 87 2 3 2058 299 229 0 0 chr1 193179357 193179427 -4016005 - ID SINE ID -153 71 2 3 2058 468 161 59 9 chr1 193179707 193179805 -4015627 + B1F1 SINE Alu 27 123 -24 3 2058 393 83 0 0 chr1 193181295 193181355 -4014077 - B1_Mus1 SINE Alu -88 60 1 3 2058 365 0 22 0 chr1 193181481 193181526 -4013906 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 2058 412 211 0 32 chr1 193183244 193183337 -4012095 - PB1D10 SINE Alu -1 116 27 3 2058 493 149 170 0 chr1 193183940 193184085 -4011347 + URR1B DNA MER1_type 5 225 0 3 2058 215 209 0 0 chr1 193184090 193184133 -4011299 + MIR SINE MIR 52 94 -168 3 2058 1291 73 44 11 chr1 193184882 193185062 -4010370 - B2_Mm2 SINE B2 -9 186 1 3 2058 474 254 17 8 chr1 193185668 193185787 -4009645 - B3A SINE B2 -43 155 36 3 2058 617 248 0 0 chr1 193185917 193186046 -4009386 - B3 SINE B2 -86 130 2 4 2058 826 230 177 15 chr1 193186391 193186656 -4008776 + MTD LTR MaLR 5 312 -107 4 2058 325 303 32 191 chr1 193186910 193187098 -4008334 + RSINE1 SINE B4 2 159 -6 4 2058 644 187 69 35 chr1 193187332 193187476 -4007956 + B1_Mur4 SINE Alu 1 149 -1 4 2058 400 301 12 10 chr1 193187608 193187741 -4007691 + B4A SINE B4 1 134 -90 4 2058 650 157 52 0 chr1 193187886 193188001 -4007431 + B1_Mur1 SINE Alu 4 124 -25 4 2058 303 28 0 0 chr1 193188315 193188351 -4007081 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 2058 955 75 45 0 chr1 193188351 193188484 -4006948 - B1_Mus1 SINE Alu -8 140 2 4 2058 820 168 103 46 chr1 193188505 193188699 -4006733 - B3 SINE B2 -7 209 5 4 2058 1102 49 28 0 chr1 193189147 193189290 -4006142 + B1_Mus1 SINE Alu 2 148 0 4 2058 370 259 18 53 chr1 193189551 193189665 -4005767 - ID_B1 SINE B4 -6 218 109 4 2058 211 366 62 14 chr1 193189839 193189983 -4005449 + L3b LINE CR1 51 201 -281 4 2058 603 220 109 19 chr1 193190250 193190546 -4004886 + Lx9 LINE L1 7244 7635 -9 4 2058 408 296 9 0 chr1 193190565 193190673 -4004759 + PB1 SINE Alu 2 110 -17 4 2058 400 307 39 16 chr1 193191061 193191190 -4004242 - RSINE1 SINE B4 -31 134 3 4 2058 21 0 0 0 chr1 193191427 193191448 -4003984 + AT_rich Low_complexity Low_complexity 1 21 0 4 2058 613 185 94 22 chr1 193191559 193191697 -4003735 + B1_Mur2 SINE Alu 2 149 0 4 2058 559 201 48 7 chr1 193191716 193191861 -4003571 + L1M4b LINE L1 3500 3650 -3684 4 2058 699 212 20 0 chr1 193191881 193192027 -4003405 + B1F2 SINE Alu 1 149 0 4 2058 37 39 0 0 chr1 193192070 193192121 -4003311 + AT_rich Low_complexity Low_complexity 1 51 0 4 2058 442 278 83 0 chr1 193192172 193192316 -4003116 - RSINE1 SINE B4 -7 158 3 4 2058 432 284 10 0 chr1 193192335 193192437 -4002995 - PB1D10 SINE Alu -14 103 1 4 2058 507 235 20 0 chr1 193193281 193193383 -4002049 - B1_Mur2 SINE Alu -43 106 3 4 2058 824 151 65 0 chr1 193194683 193194822 -4000610 - B1_Mur3 SINE Alu -1 148 1 4 2058 25 0 0 0 chr1 193195216 193195241 -4000191 + AT_rich Low_complexity Low_complexity 1 25 0 4 2058 613 243 29 0 chr1 193196099 193196239 -3999193 - B1_Mur1 SINE Alu -4 145 2 4 2058 825 50 8 16 chr1 193197415 193197536 -3997896 - B1_Mus2 SINE Alu 0 147 28 4 2058 425 229 258 13 chr1 193197996 193198155 -3997277 - B4A SINE B4 -94 198 1 4 2058 22 35 0 0 chr1 193198390 193198419 -3997013 + AT_rich Low_complexity Low_complexity 1 29 0 4 2058 249 161 94 31 chr1 193199439 193199503 -3995929 + MTEa LTR MaLR 305 372 -7 4 2058 535 305 125 40 chr1 193199584 193199905 -3995527 + ORR1E LTR MaLR 4 351 -8 4 2059 1373 127 61 0 chr1 193201001 193201213 -3994219 + URR1B DNA MER1_type 1 225 0 4 2059 1183 173 94 23 chr1 193201490 193201727 -3993705 + MT2A LTR ERVL 1 245 -288 4 2059 387 0 0 0 chr1 193201727 193201770 -3993662 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 2059 356 0 23 0 chr1 193201770 193201814 -3993618 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 2059 1183 220 50 96 chr1 193201814 193201997 -3993435 + MT2A LTR ERVL 246 569 -15 4 2059 216 0 0 0 chr1 193201997 193202021 -3993411 + (A)n Simple_repeat Simple_repeat 1 24 0 4 2059 1485 247 58 30 chr1 193202029 193202562 -3992870 - L1_Mur3 LINE L1 -498 5814 5261 4 2059 471 309 81 22 chr1 193202664 193202886 -3992546 - L1_Mur3 LINE L1 -1059 5084 4850 4 2059 448 235 32 39 chr1 193202976 193203131 -3992301 - L1MC LINE L1 -2320 3826 3673 4 2059 360 268 43 0 chr1 193203129 193203267 -3992165 - L1M5 LINE L1 -2646 3500 3357 4 2059 1581 63 0 0 chr1 193203363 193203554 -3991878 + B2_Mm1a SINE B2 2 192 -1 4 2059 533 252 6 64 chr1 193203603 193203760 -3991672 + B1F2 SINE Alu 1 148 -1 4 2059 327 214 34 0 chr1 193203777 193203866 -3991566 + L1M4b LINE L1 88 179 -7155 4 2059 327 222 248 45 chr1 193204527 193204749 -3990683 + L1M4b LINE L1 1426 1692 -5642 4 2059 489 15 0 29 chr1 193204797 193204867 -3990565 + B1_Mm SINE Alu 80 147 0 4 2059 225 0 0 0 chr1 193204867 193204892 -3990540 + (A)n Simple_repeat Simple_repeat 1 25 0 4 2059 574 247 92 23 chr1 193204910 193205084 -3990348 + B3 SINE B2 31 216 0 4 2059 384 237 205 14 chr1 193205097 193205307 -3990125 + L1M4b LINE L1 1780 2029 -5305 4 2059 421 244 199 0 chr1 193205307 193205438 -3989994 + RSINE1 SINE B4 4 160 -5 4 2059 332 292 96 44 chr1 193205438 193205478 -3989954 + L1M4b LINE L1 2142 2190 -4912 4 2059 1482 65 38 0 chr1 193205597 193205782 -3989650 + B2_Mm2 SINE B2 4 195 0 4 2059 243 387 32 11 chr1 193206814 193206828 -3988604 + ID_B1 SINE B4 78 173 -51 4 2059 309 338 0 0 chr1 193206828 193206908 -3988524 + PB1D10 SINE Alu 13 92 -25 4 2059 181 215 0 58 chr1 193206914 193206983 -3988449 + GA-rich Low_complexity Low_complexity 3 67 0 4 2059 309 338 0 0 chr1 193207108 193207188 -3988244 - PB1D10 SINE Alu -25 92 13 4 2059 1527 27 32 5 chr1 193207383 193207569 -3987863 - B2_Mm2 SINE B2 -3 192 2 4 2059 267 31 0 0 chr1 193208016 193208048 -3987384 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 4 2059 228 67 0 0 chr1 193208119 193208149 -3987283 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 2059 533 252 76 64 chr1 193208163 193208320 -3987112 + RSINE1 SINE B4 3 161 -4 4 2059 2681 21 2 262 chr1 193209237 193209764 -3985668 + RLTR10 LTR ERVK 1 390 0 4 2059 17411 23 1 0 chr1 193209805 193211748 -3983684 + RLTR10-int LTR ERVK 41 1984 -3 4 2059 2756 20 2 240 chr1 193211750 193212262 -3983170 + RLTR10 LTR ERVK 1 390 0 4 2059 1187 42 0 0 chr1 193212496 193212638 -3982794 - B1_Mus1 SINE Alu -6 142 1 4 2059 1295 78 78 0 chr1 193213366 193213525 -3981907 + B2_Mm1a SINE B2 1 160 -33 4 2059 279 0 0 0 chr1 193213525 193213556 -3981876 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 2059 1295 78 78 0 chr1 193213556 193213575 -3981857 + B2_Mm1a SINE B2 161 192 -1 4 2059 475 259 63 21 chr1 193214003 193214145 -3981287 + B1F SINE Alu 1 148 -1 4 2059 529 219 94 0 chr1 193214931 193215059 -3980373 - B1_Mur1 SINE Alu 0 149 10 4 2059 359 263 65 36 chr1 193215550 193215688 -3979744 + MER5B DNA MER1_type 4 145 -33 4 2059 516 208 137 40 chr1 193216691 193216703 -3978729 - B3A SINE B2 -4 194 183 4 2059 189 0 0 0 chr1 193216703 193216724 -3978708 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 2059 714 169 136 2 chr1 193216724 193216886 -3978546 - B3 SINE B2 -16 182 3 4 2059 526 273 54 12 chr1 193217017 193217184 -3978248 + B3A SINE B2 3 176 -22 4 2059 313 191 122 11 chr1 193217315 193217405 -3978027 - MIRb SINE MIR -67 201 102 4 2059 234 0 0 0 chr1 193217569 193217595 -3977837 + (A)n Simple_repeat Simple_repeat 1 26 0 4 2059 33 66 0 0 chr1 193220345 193220406 -3975026 + GC_rich Low_complexity Low_complexity 1 61 0 4 2059 34 65 0 0 chr1 193220454 193220516 -3974916 + GC_rich Low_complexity Low_complexity 1 62 0 4 2059 408 272 89 1 chr1 193222099 193222289 -3973143 + L1MA4 LINE L1 5719 5908 -392 4 2059 30 0 0 0 chr1 193222416 193222446 -3972986 + AT_rich Low_complexity Low_complexity 1 30 0 4 2059 1090 148 184 4 chr1 193222643 193222743 -3972689 - Lx9 LINE L1 -4 7640 7520 4 2059 258 32 0 0 chr1 193222743 193222774 -3972658 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4 2059 1090 148 184 4 chr1 193222774 193222951 -3972481 - Lx9 LINE L1 -125 7519 7315 4 2059 378 188 43 0 chr1 193223634 193223703 -3971729 + ID4 SINE ID 5 76 -7 4 2059 507 273 42 7 chr1 193224312 193224456 -3970976 + B1F2 SINE Alu 1 149 0 4 2059 215 241 17 17 chr1 193225125 193225184 -3970248 + CT-rich Low_complexity Low_complexity 3 61 0 4 2059 1653 36 0 0 chr1 193225653 193225845 -3969587 + B2_Mm1a SINE B2 2 193 0 4 2059 498 279 28 14 chr1 193225845 193225987 -3969445 + ID_B1 SINE B4 81 224 0 4 2059 21 0 0 0 chr1 193226001 193226022 -3969410 + AT_rich Low_complexity Low_complexity 1 21 0 4 2059 192 77 0 0 chr1 193226244 193226270 -3969162 + (A)n Simple_repeat Simple_repeat 1 26 0 4 2059 495 209 51 17 chr1 193226817 193226934 -3968498 + B1F2 SINE Alu 29 149 0 4 2059 227 296 0 0 chr1 193226981 193227035 -3968397 + PB1D10 SINE Alu 39 92 -25 4 2059 548 123 0 9 chr1 193227390 193227505 -3967927 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 2059 303 300 68 23 chr1 193227978 193228111 -3967321 + RMER15 LTR ERVL 424 562 -13 4 2059 185 305 27 123 chr1 193228457 193228603 -3966829 - L2 LINE L2 -559 2860 2729 4 2059 360 0 0 0 chr1 193228653 193228693 -3966739 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 2059 313 213 16 0 chr1 193229532 193229593 -3965839 + ID4 SINE ID 2 63 -20 4 2059 212 306 0 61 chr1 193229665 193229731 -3965701 + ID4_ SINE ID 3 64 -19 4 2059 1694 21 0 0 chr1 193230017 193230207 -3965225 - B2_Mm1a SINE B2 -2 191 2 4 2059 329 333 20 54 chr1 193232157 193232306 -3963126 + L1MEg LINE L1 1816 1959 -4125 4 2059 206 116 23 0 chr1 193232901 193232944 -3962488 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 4 2059 1819 196 69 0 chr1 193233081 193233459 -3961973 + MTD LTR MaLR 13 416 -3 4 2059 307 328 47 39 chr1 193233601 193233728 -3961704 + MIRb SINE MIR 117 244 -24 4 2059 512 30 15 0 chr1 193234093 193234159 -3961273 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 2059 249 33 0 0 chr1 193234215 193234245 -3961187 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 2059 1623 32 5 0 chr1 193235993 193236181 -3959251 + B2_Mm1t SINE B2 2 190 -3 4 2059 238 275 165 0 chr1 193236324 193236415 -3959017 + Charlie5 DNA MER1_type 1 106 -2518 4 2059 226 276 79 22 chr1 193236495 193236545 -3958887 + PB1D10 SINE Alu 15 108 -9 4 2059 231 103 77 0 chr1 193236545 193236584 -3958848 + ID_B1 SINE B4 174 215 -9 4 2059 994 260 65 20 chr1 193236581 193236875 -3958557 + Charlie5 DNA MER1_type 727 1033 -1591 4 2059 1157 241 127 32 chr1 193236878 193237289 -3958143 + L1MA9 LINE L1 5559 6008 -304 4 2059 647 323 85 33 chr1 193237666 193237996 -3957436 + Charlie5 DNA MER1_type 1025 1371 -1253 4 2059 487 264 127 68 chr1 193238206 193238259 -3957173 + Charlie5 DNA MER1_type 1383 1425 -1199 4 2059 537 190 33 49 chr1 193238259 193238381 -3957051 - PB1D9 SINE Alu 0 120 1 5 2059 487 264 127 68 chr1 193238381 193238556 -3956876 + Charlie5 DNA MER1_type 1426 1625 -999 4 2059 270 0 0 0 chr1 193238556 193238586 -3956846 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 2059 926 257 120 28 chr1 193238871 193239295 -3956137 + Charlie5 DNA MER1_type 2076 2538 -86 4 2059 252 0 0 0 chr1 193239502 193239530 -3955902 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 2059 580 292 32 97 chr1 193241255 193241471 -3953961 + RMER15 LTR ERVL 360 561 -14 5 2059 271 271 13 67 chr1 193242153 193242228 -3953204 + ID4 SINE ID 13 83 0 5 2059 469 236 19 9 chr1 193242565 193242672 -3952760 + PB1D7 SINE Alu 1 108 -12 5 2059 187 104 42 0 chr1 193242674 193242722 -3952710 + (CCCCCA)n Simple_repeat Simple_repeat 5 54 0 5 2059 1020 148 42 17 chr1 193243549 193243789 -3951643 + RMER17C LTR ERVK 1 246 -164 5 2059 945 189 7 47 chr1 193243796 193244095 -3951337 + RMER17C LTR ERVK 84 370 -40 5 2059 185 253 120 0 chr1 193244757 193244832 -3950600 + MIRb SINE MIR 179 262 -6 5 2059 477 0 0 0 chr1 193245528 193245581 -3949851 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 2059 669 200 15 16 chr1 193245972 193246118 -3949314 - B1F SINE Alu 0 149 5 5 2059 733 179 6 6 chr1 193246497 193246660 -3948772 + GA-rich Low_complexity Low_complexity 4 166 0 5 2059 943 106 7 7 chr1 193246869 193247021 -3948411 + (TTC)n Simple_repeat Simple_repeat 3 154 0 5 2059 333 0 0 0 chr1 193247021 193247058 -3948374 + (CTG)n Simple_repeat Simple_repeat 1 37 0 5 2059 482 339 15 35 chr1 193247078 193247277 -3948155 - ID_B1 SINE B4 -1 223 29 5 2059 335 164 34 102 chr1 193247255 193247343 -3948089 - PB1D9 SINE Alu -19 101 20 5 2059 250 273 105 86 chr1 193247286 193247378 -3948054 - ID_B1 SINE B4 -67 157 68 5 2059 471 35 0 0 chr1 193247378 193247435 -3947997 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 5 2059 271 173 39 0 chr1 193247442 193247494 -3947938 - ID2 SINE ID -27 56 3 5 2059 233 175 15 136 chr1 193247977 193248043 -3947389 - MER5A DNA MER1_type 0 189 132 5 2059 953 210 5 42 chr1 193248052 193248241 -3947191 + B3 SINE B2 3 184 -32 5 2059 238 224 0 20 chr1 193248241 193248291 -3947141 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 2059 656 262 6 45 chr1 193248315 193248471 -3946961 + RSINE1 SINE B4 3 152 -13 5 2059 414 248 114 15 chr1 193248547 193248678 -3946754 + B1F SINE Alu 6 149 0 5 2059 229 254 179 0 chr1 193248688 193248755 -3946677 + ID2 SINE ID 1 79 -4 5 2059 321 261 155 68 chr1 193248742 193248890 -3946542 - MER5A DNA MER1_type -26 163 3 5 2059 502 244 31 47 chr1 193249394 193249523 -3945909 - B1_Mur1 SINE Alu -20 129 3 5 2059 243 0 0 0 chr1 193249590 193249617 -3945815 + (T)n Simple_repeat Simple_repeat 1 27 0 5 2059 250 247 191 67 chr1 193250157 193250335 -3945097 - MIRb SINE MIR -6 262 63 5 2059 564 244 121 55 chr1 193250346 193250528 -3944904 - B3 SINE B2 0 216 23 5 2059 437 252 107 4 chr1 193250779 193250898 -3944534 + ID_B1 SINE B4 82 206 -86 5 2059 239 380 98 51 chr1 193251019 193251354 -3944078 + L2c LINE L2 3036 3386 -1 5 2059 185 133 33 0 chr1 193251514 193251544 -3943888 + MIRb SINE MIR 217 247 -21 5 2059 318 259 193 18 chr1 193252975 193253089 -3942343 - B1F2 SINE Alu -3 146 13 5 2059 1381 86 0 0 chr1 193253158 193253333 -3942099 + B2_Mm2 SINE B2 2 176 -19 5 2059 342 0 0 0 chr1 193253880 193253918 -3941514 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 2059 470 267 30 30 chr1 193254941 193254959 -3940473 - RSINE1 SINE B4 -28 137 122 5 2059 342 0 0 0 chr1 193254959 193254997 -3940435 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 2059 470 267 30 30 chr1 193254997 193255113 -3940319 - RSINE1 SINE B4 -44 121 4 5 2059 1657 31 0 0 chr1 193255159 193255351 -3940081 - B2_Mm1a SINE B2 0 193 2 5 2059 1479 78 16 0 chr1 193255352 193255544 -3939888 - B2_Mm2 SINE B2 0 195 1 5 2059 246 238 31 31 chr1 193255646 193255711 -3939721 - ID4_ SINE ID -17 66 2 5 2059 421 200 136 15 chr1 193255720 193255852 -3939580 - B1F SINE Alu -1 148 1 5 2059 1102 129 165 0 chr1 193256717 193256911 -3938521 + URR1A DNA MER1_type 1 226 0 5 2059 548 231 30 66 chr1 193257073 193257240 -3938192 + B3A SINE B2 36 196 -2 5 2059 452 287 175 95 chr1 193257395 193257421 -3938011 + MLT1A0 LTR MaLR 1 20 -388 5 2059 1409 91 5 0 chr1 193257421 193257607 -3937825 + B2_Mm1a SINE B2 1 187 -6 5 2059 452 287 175 95 chr1 193257607 193257619 -3937813 + MLT1A0 LTR MaLR 21 29 -379 5 2059 977 153 7 0 chr1 193257619 193257763 -3937669 + B1_Mur3 SINE Alu 5 149 0 5 2059 482 287 175 95 chr1 193257763 193258101 -3937331 + MLT1A0 LTR MaLR 26 408 0 5 2059 364 271 196 0 chr1 193258114 193258247 -3937185 - RSINE1 SINE B4 -6 159 1 5 2059 279 319 82 47 chr1 193258854 193259032 -3936400 + MIRb SINE MIR 32 221 -41 5 2059 509 246 97 0 chr1 193259033 193259167 -3936265 - RMER30 DNA MER1_type -17 185 39 5 2059 186 133 0 0 chr1 193259244 193259274 -3936158 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 5 2059 366 202 128 30 chr1 193260043 193260176 -3935256 - MIR SINE MIR -50 212 67 5 2059 798 197 14 0 chr1 193260252 193260399 -3935033 - B1_Mur2 SINE Alu 0 149 1 5 2059 421 186 40 0 chr1 193260977 193261101 -3934331 + CT-rich Low_complexity Low_complexity 1 129 0 5 2059 304 295 12 37 chr1 193261155 193261236 -3934196 + ID4_ SINE ID 2 80 -3 5 2059 213 159 0 22 chr1 193261238 193261283 -3934149 + A-rich Low_complexity Low_complexity 5 48 0 5 2059 219 250 0 48 chr1 193261296 193261359 -3934073 - MIR3 SINE MIR -6 202 143 5 2059 181 351 52 21 chr1 193262182 193262278 -3933154 - MIR SINE MIR -90 172 74 5 2059 219 226 38 0 chr1 193262347 193262400 -3933032 + ID4 SINE ID 10 64 -19 5 2059 259 355 89 0 chr1 193263624 193263673 -3931759 - MLT1B LTR MaLR -45 345 287 5 2059 1308 194 256 6 chr1 193263673 193264005 -3931427 + MTD LTR MaLR 5 419 0 5 2059 259 355 89 0 chr1 193264005 193264079 -3931353 - MLT1B LTR MaLR -104 286 212 5 2059 514 279 65 6 chr1 193264261 193264415 -3931017 - ID_B1 SINE B4 -9 215 59 5 2059 318 282 99 78 chr1 193264542 193264684 -3930748 - RMER15 LTR ERVL -14 561 417 5 2059 227 328 31 16 chr1 193264732 193264859 -3930573 - Lx8 LINE L1 -311 7162 7034 5 2059 298 310 14 0 chr1 193265135 193265206 -3930226 + B4A SINE B4 1 72 -220 5 2059 1996 141 51 3 chr1 193265191 193265504 -3929928 - MTC LTR MaLR -93 328 1 5 2059 722 248 0 7 chr1 193265556 193265706 -3929726 + B1_Mur1 SINE Alu 1 149 0 5 2059 585 275 60 0 chr1 193266036 193266185 -3929247 - ID_B1 SINE B4 -65 159 2 5 2059 606 131 0 0 chr1 193266191 193266313 -3929119 + (CCCCAG)n Simple_repeat Simple_repeat 1 122 0 5 2059 225 316 162 89 chr1 193266434 193266705 -3928727 - ORR1D2 LTR MaLR -74 296 6 5 2059 455 133 58 35 chr1 193266765 193266851 -3928581 + MT2B LTR ERVL 1 87 -446 5 2059 782 167 4 60 chr1 193266864 193267013 -3928419 - B1_Mus1 SINE Alu 0 148 11 5 2059 1279 219 61 69 chr1 193267040 193267411 -3928021 + MT2B LTR ERVL 159 542 -59 5 2059 261 0 0 0 chr1 193267411 193267440 -3927992 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 2059 1279 206 69 51 chr1 193267440 193267482 -3927950 + MT2B LTR ERVL 543 598 -3 5 2059 204 40 0 0 chr1 193267683 193267708 -3927724 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 2059 206 122 0 68 chr1 193267816 193267860 -3927572 + GA-rich Low_complexity Low_complexity 4 44 0 5 2059 423 263 0 0 chr1 193267865 193267941 -3927491 + PB1D10 SINE Alu 4 79 -38 5 2059 324 216 10 129 chr1 193268696 193268797 -3926635 - PB1D10 SINE Alu -1 116 28 5 2059 387 60 0 0 chr1 193269204 193269254 -3926178 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 5 2059 712 203 23 0 chr1 193269254 193269387 -3926045 - B1_Mur3 SINE Alu -12 137 2 5 2059 1559 213 33 24 chr1 193269391 193269727 -3925705 - ORR1D2 LTR MaLR -4 366 28 5 2059 270 0 0 0 chr1 193269728 193269758 -3925674 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 2059 254 250 14 27 chr1 193269811 193269885 -3925547 + MTEb LTR MaLR 37 109 -270 5 2059 600 240 153 0 chr1 193269919 193270069 -3925363 + MTEb LTR MaLR 207 379 0 5 2059 21 0 0 0 chr1 193270178 193270199 -3925233 + AT_rich Low_complexity Low_complexity 1 21 0 5 2059 602 265 0 29 chr1 193270199 193270339 -3925093 - ID_B1 SINE B4 -4 220 85 5 2059 324 48 0 0 chr1 193270662 193270704 -3924728 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 2059 297 0 0 0 chr1 193270704 193270736 -3924696 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 2059 334 264 126 0 chr1 193270752 193270839 -3924593 - PB1D7 SINE Alu -22 98 1 5 2059 350 235 174 0 chr1 193271181 193271279 -3924153 + PB1D10 SINE Alu 3 117 0 5 2059 360 0 0 0 chr1 193271468 193271508 -3923924 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 2059 277 350 42 25 chr1 193271518 193271655 -3923777 - MIR SINE MIR -125 143 3 5 2059 473 262 56 9 chr1 193272731 193272839 -3922593 - B1F2 SINE Alu -5 144 32 5 2059 288 0 0 0 chr1 193272839 193272871 -3922561 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 2059 972 204 94 25 chr1 193272896 193273097 -3922335 - B3 SINE B2 0 216 2 5 2059 445 204 33 30 chr1 193273921 193274033 -3921399 + PB1D10 SINE Alu 9 127 0 5 2059 848 185 6 37 chr1 193274724 193274887 -3920545 + MTEb LTR MaLR 1 158 -221 5 2059 1078 228 98 44 chr1 193276348 193276480 -3918952 + MTE2b LTR MaLR 46 198 -181 5 2059 904 232 35 91 chr1 193276480 193276821 -3918611 + RLTRETN_Mm LTR ERVK 1 322 0 5 2059 1078 228 98 44 chr1 193276821 193277005 -3918427 + MTE2b LTR MaLR 199 379 0 5 2059 1255 41 0 0 chr1 193277035 193277181 -3918251 + B1_Mus2 SINE Alu 2 147 0 5 2059 396 0 0 0 chr1 193278424 193278468 -3916964 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 2059 316 298 165 0 chr1 193278469 193278590 -3916842 + MER45A DNA Tip100 37 177 -1 5 2059 1036 204 19 19 chr1 193278945 193279160 -3916272 + B3 SINE B2 1 215 -1 5 2059 219 36 0 0 chr1 193279160 193279188 -3916244 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 2059 411 164 15 0 chr1 193279242 193279309 -3916123 + B1F SINE Alu 9 76 -73 6 2059 745 291 84 52 chr1 193279524 193279811 -3915621 + MLT1A LTR MaLR 1 296 -78 6 2059 415 270 114 21 chr1 193279875 193280068 -3915364 - B3 SINE B2 -3 213 3 6 2059 1019 209 0 77 chr1 193280256 193280489 -3914943 + B3 SINE B2 2 216 0 6 2059 870 278 5 0 chr1 193281308 193281513 -3913919 + B3 SINE B2 5 210 -6 6 2059 827 280 26 61 chr1 193281720 193282032 -3913400 + ORR1E LTR MaLR 7 307 -52 6 2059 597 271 38 0 chr1 193282044 193282177 -3913255 - ID_B1 SINE B4 -1 223 86 6 2059 381 138 0 0 chr1 193282178 193282236 -3913196 + ORR1E LTR MaLR 320 377 -2 6 2059 1128 175 57 0 chr1 193282291 193282485 -3912947 + B3 SINE B2 1 205 -11 6 2059 405 373 89 5 chr1 193282522 193282724 -3912708 - MER102b DNA MER1_type -122 219 1 6 2059 244 281 71 133 chr1 193283037 193283276 -3912156 + ORR1D2 LTR MaLR 38 270 -104 6 2059 246 356 10 19 chr1 193283444 193283547 -3911885 + MT2B LTR ERVL 162 263 -338 6 2059 495 258 40 8 chr1 193283463 193283588 -3911844 + B1F2 SINE Alu 21 149 0 6 2059 340 258 9 47 chr1 193283639 193283745 -3911687 + PB1D10 SINE Alu 16 117 0 6 2059 264 290 80 45 chr1 193283884 193283996 -3911436 - MLT1D LTR MaLR -113 392 277 6 2059 512 289 139 68 chr1 193283999 193284348 -3911084 + MLT1A0 LTR MaLR 2 408 0 6 2059 181 386 10 29 chr1 193285002 193285106 -3910326 + L4 LINE RTE 688 789 -1240 6 2059 364 197 0 27 chr1 193285205 193285278 -3910154 - MLT1A0 LTR MaLR -34 331 261 6 2059 239 130 19 0 chr1 193285609 193285663 -3909769 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 2059 252 0 0 0 chr1 193286584 193286612 -3908820 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 2059 5781 190 73 31 chr1 193286613 193287758 -3907674 + Lx9 LINE L1 6316 7505 -139 6 2059 1402 71 11 0 chr1 193287758 193287942 -3907490 + B2_Mm1t SINE B2 1 186 -7 6 2059 5781 190 73 31 chr1 193287942 193288071 -3907361 + Lx9 LINE L1 7506 7643 -1 6 2059 480 174 0 11 chr1 193288140 193288227 -3907205 + ORR1D1 LTR MaLR 289 374 0 6 2059 386 278 31 56 chr1 193288605 193288765 -3906667 - MER65D LTR ERV1 -114 359 204 6 2059 556 242 229 86 chr1 193289776 193289936 -3905496 + B4 SINE B4 14 223 -69 6 2059 1456 63 0 26 chr1 193289936 193290131 -3905301 - B2_Mm2 SINE B2 -4 191 2 6 2059 556 242 229 86 chr1 193290131 193290214 -3905218 + B4 SINE B4 224 292 0 6 2059 364 342 75 40 chr1 193290257 193290560 -3904872 + MER57D LTR ERV1 86 406 -5 6 2059 272 174 42 42 chr1 193290565 193290661 -3904771 + CT-rich Low_complexity Low_complexity 5 100 0 6 2059 256 267 8 165 chr1 193291107 193291228 -3904204 + MIR SINE MIR 38 139 -123 6 2059 649 248 84 1 chr1 193291234 193291422 -3904010 + ID_B1 SINE B4 1 207 -17 6 2059 333 0 0 0 chr1 193291423 193291460 -3903972 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 2059 375 23 0 0 chr1 193291462 193291506 -3903926 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 2059 563 217 45 91 chr1 193291929 193292061 -3903371 - RSINE1 SINE B4 -36 129 4 6 2059 254 311 0 13 chr1 193292116 193292191 -3903241 + PB1D10 SINE Alu 18 91 -26 6 2059 983 95 0 69 chr1 193292221 193292366 -3903066 + B1_Mus1 SINE Alu 1 136 -12 6 2059 207 0 0 0 chr1 193292366 193292389 -3903043 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 2059 983 95 0 69 chr1 193292389 193292402 -3903030 + B1_Mus1 SINE Alu 137 148 0 6 2059 316 323 91 25 chr1 193292463 193292710 -3902722 + HAL1-3A_ME LINE L1 2285 2444 -414 6 2059 267 123 14 58 chr1 193292712 193292781 -3902651 + GA-rich Low_complexity Low_complexity 5 70 0 6 2059 768 223 32 53 chr1 193293514 193293703 -3901729 + B3 SINE B2 28 212 -4 6 2059 188 317 78 10 chr1 193293733 193293835 -3901597 - MIR SINE MIR -118 144 36 6 2059 491 272 88 10 chr1 193294845 193295038 -3900394 + MER33 DNA MER1_type 1 208 -116 6 2059 212 189 19 0 chr1 193295185 193295238 -3900194 + T-rich Low_complexity Low_complexity 2 55 0 6 2059 531 252 42 7 chr1 193295269 193295413 -3900019 - RSINE1 SINE B4 -14 151 3 6 2059 21 57 0 0 chr1 193295413 193295448 -3899984 + AT_rich Low_complexity Low_complexity 1 35 0 6 2059 354 252 51 86 chr1 193295531 193295648 -3899784 + PB1D10 SINE Alu 5 117 0 6 2059 885 176 7 7 chr1 193296171 193296314 -3899118 - B1_Mur2 SINE Alu -5 144 2 6 2059 983 204 0 17 chr1 193296331 193296510 -3898922 - B3A SINE B2 -22 176 1 6 2059 417 152 0 152 chr1 193296909 193297119 -3898313 + (AGGTG)n Simple_repeat Simple_repeat 1 178 0 6 2059 251 234 16 0 chr1 193297174 193297302 -3898130 + (CAGG)n Simple_repeat Simple_repeat 2 131 0 6 2059 459 333 0 0 chr1 193297323 193297598 -3897834 + (CGGG)n Simple_repeat Simple_repeat 1 275 0 6 2059 531 295 6 0 chr1 193297564 193297908 -3897524 + (CAGG)n Simple_repeat Simple_repeat 1 346 0 6 2059 433 174 0 144 chr1 193297789 193297997 -3897435 + (GGGTG)n Simple_repeat Simple_repeat 1 178 0 6 2059 687 167 121 121 chr1 193298250 193298448 -3896984 - B3A SINE B2 0 198 1 6 2059 1117 331 80 4 chr1 193298458 193298958 -3896474 + Lx8 LINE L1 6804 7341 -132 6 2059 3521 20 5 0 chr1 193298974 193299368 -3896064 - MTA_Mm LTR MaLR 0 396 1 6 2059 355 38 0 36 chr1 193299461 193299516 -3895916 + (TAA)n Simple_repeat Simple_repeat 1 53 0 6 2059 509 252 0 0 chr1 193299539 193299638 -3895794 + PB1D9 SINE Alu 18 116 -4 6 2059 542 285 45 57 chr1 193299766 193300010 -3895422 - B4A SINE B4 0 292 69 6 2059 240 35 0 0 chr1 193300473 193300502 -3894930 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 2059 22 0 0 0 chr1 193300567 193300589 -3894843 + AT_rich Low_complexity Low_complexity 1 22 0 6 2059 1621 171 50 61 chr1 193300651 193300993 -3894439 + ORR1C1 LTR MaLR 1 338 -40 6 2059 1177 49 14 0 chr1 193300995 193301138 -3894294 + B1_Mm SINE Alu 3 147 0 6 2059 21 0 0 0 chr1 193301793 193301814 -3893618 + AT_rich Low_complexity Low_complexity 1 21 0 6 2059 566 179 43 35 chr1 193301895 193302011 -3893421 - B1_Mur2 SINE Alu -15 134 18 6 2059 260 222 0 172 chr1 193301943 193302030 -3893402 - MT2B LTR ERVL -361 240 169 6 2059 198 0 0 0 chr1 193302036 193302058 -3893374 + (A)n Simple_repeat Simple_repeat 1 22 0 6 2059 560 274 15 23 chr1 193302058 193302189 -3893243 - B1F SINE Alu -13 136 7 6 2059 657 183 239 28 chr1 193302526 193302706 -3892726 - ID_B1 SINE B4 -4 220 3 6 2059 234 274 14 0 chr1 193302747 193302820 -3892612 - L1MC3 LINE L1 -1 7784 7711 6 2059 492 282 117 4 chr1 193302944 193303193 -3892239 - L1MC3 LINE L1 -269 7516 7240 6 2059 1026 244 5 5 chr1 193303299 193303513 -3891919 - B3 SINE B2 -1 215 2 6 2059 237 210 81 0 chr1 193303615 193303677 -3891755 - L1MC2 LINE L1 -11 6333 6267 6 2059 399 307 50 12 chr1 193303846 193304087 -3891345 + L1M2 LINE L1 5505 5754 -537 6 2059 342 225 147 0 chr1 193304631 193304760 -3890672 - L1MEc LINE L1 -4522 2096 1949 6 2059 332 340 47 20 chr1 193304808 193304958 -3890474 - L1MEc LINE L1 -4683 1950 1797 6 2059 522 281 47 146 chr1 193304980 193305213 -3890219 - B4 SINE B4 -67 225 16 6 2059 416 294 135 19 chr1 193305454 193305669 -3889763 + LTR16A1 LTR ERVL 216 455 -1 6 2059 476 299 21 28 chr1 193305755 193305896 -3889536 - RSINE1 SINE B4 -23 142 3 6 2059 487 199 37 26 chr1 193305925 193306041 -3889391 + PB1D9 SINE Alu 1 149 0 6 2059 703 264 149 45 chr1 193306233 193306558 -3888874 + MLT1A0 LTR MaLR 1 359 -6 6 2059 416 51 17 0 chr1 193307086 193307145 -3888287 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 2059 1363 235 130 36 chr1 193307436 193307948 -3887484 + RLTR26 LTR ERVK 3 615 -27 6 2059 437 293 137 46 chr1 193308170 193308367 -3887065 - MLT1A0 LTR MaLR -35 330 116 6 2059 369 200 126 0 chr1 193309268 193309363 -3886069 - PB1D10 SINE Alu -1 116 10 6 2059 736 180 6 8 chr1 193309520 193309890 -3885542 + (TG)n Simple_repeat Simple_repeat 1 369 0 6 2059 245 206 0 16 chr1 193310249 193310313 -3885119 + T-rich Low_complexity Low_complexity 2 64 0 6 2059 334 287 23 0 chr1 193310534 193310650 -3884782 + MIRb SINE MIR 108 232 -36 6 2059 472 139 162 38 chr1 193311640 193311745 -3883687 - B1_Mus2 SINE Alu -29 118 1 6 2059 489 17 0 0 chr1 193312256 193312314 -3883118 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 2059 649 270 154 81 chr1 193312344 193312590 -3882842 - B4 SINE B4 -27 265 2 6 2059 420 108 49 97 chr1 193312617 193312802 -3882630 + CT-rich Low_complexity Low_complexity 5 180 0 6 2059 352 262 161 16 chr1 193312810 193312934 -3882498 - B1_Mus2 SINE Alu 0 147 6 6 2059 871 210 81 67 chr1 193313340 193313484 -3881948 - B3 SINE B2 -4 212 56 6 2059 1212 68 75 0 chr1 193313484 193313645 -3881787 - B2_Mm2 SINE B2 -19 176 4 6 2059 871 210 81 67 chr1 193313645 193313709 -3881723 - B3 SINE B2 -161 55 1 6 2059 663 99 0 0 chr1 193313799 193313900 -3881532 + (TATG)n Simple_repeat Simple_repeat 4 104 0 6 2059 473 338 38 50 chr1 193315191 193315590 -3879842 + L1MEc LINE L1 1936 2329 -4071 6 2059 658 253 60 0 chr1 193315670 193315820 -3879612 + RSINE1 SINE B4 2 160 -5 6 2059 212 328 7 74 chr1 193316278 193316413 -3879019 - L2b LINE L2 -318 3057 2932 6 2059 426 230 0 0 chr1 193316453 193316601 -3878831 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 2059 321 73 0 0 chr1 193316602 193316643 -3878789 - HAL1-3A_ME LINE L1 -847 2011 1971 6 2059 347 250 0 0 chr1 193316643 193316711 -3878721 - L2b LINE L2 -501 2918 2851 6 2059 499 330 90 59 chr1 193316872 193317097 -3878335 - L2b LINE L2 -661 2758 2504 6 2059 396 0 0 0 chr1 193317097 193317141 -3878291 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 2059 499 330 90 59 chr1 193317141 193317269 -3878163 - L2b LINE L2 -916 2503 2394 6 2059 21 36 0 0 chr1 193318691 193318719 -3876713 + AT_rich Low_complexity Low_complexity 1 28 0 6 2059 577 256 58 13 chr1 193319494 193319648 -3875784 + RSINE1 SINE B4 3 163 -2 7 2059 620 231 198 27 chr1 193319694 193319881 -3875551 - ID_B1 SINE B4 -5 219 1 7 2059 248 221 20 4 chr1 193320027 193320089 -3875343 + B3A SINE B2 69 132 -66 7 2059 1145 263 75 25 chr1 193320144 193320464 -3874968 + MTEb LTR MaLR 41 376 -3 7 2059 279 0 0 0 chr1 193320828 193320859 -3874573 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 2059 774 116 0 0 chr1 193320861 193320973 -3874459 - B1_Mus2 SINE Alu -12 135 24 7 2059 203 333 121 0 chr1 193320989 193321121 -3874311 + MIRb SINE MIR 5 152 -116 7 2059 1346 111 0 0 chr1 193321241 193321421 -3874011 + B2_Mm2 SINE B2 2 181 -14 7 2059 441 105 333 28 chr1 193321453 193321561 -3873871 + B2_Mm2 SINE B2 47 187 -8 7 2059 207 0 0 0 chr1 193321620 193321643 -3873789 + (T)n Simple_repeat Simple_repeat 1 23 0 7 2059 675 176 0 0 chr1 193321662 193321770 -3873662 - B1_Mur4 SINE Alu -1 149 42 7 2059 314 152 16 33 chr1 193321815 193321876 -3873556 - B1_Mur4 SINE Alu -90 60 1 7 2059 23 33 0 0 chr1 193321884 193321914 -3873518 + AT_rich Low_complexity Low_complexity 1 30 0 7 2059 403 256 31 79 chr1 193321931 193322058 -3873374 - RSINE1 SINE B4 -41 124 4 7 2059 213 108 27 0 chr1 193322636 193322673 -3872759 - B3 SINE B2 -177 39 2 7 2059 254 236 181 0 chr1 193322795 193322867 -3872565 + B1_Mur3 SINE Alu 2 86 -63 7 2059 227 312 40 79 chr1 193322796 193322897 -3872535 + MT2B LTR ERVL 167 263 -338 7 2059 420 273 10 10 chr1 193323239 193323339 -3872093 + RSINE1 SINE B4 35 134 -31 7 2059 378 0 0 0 chr1 193323345 193323387 -3872045 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 2059 1685 31 0 0 chr1 193323412 193323603 -3871829 + B2_Mm1a SINE B2 3 193 0 7 2059 443 225 8 40 chr1 193323659 193323782 -3871650 - RSINE1 SINE B4 -25 140 22 7 2059 610 106 14 8 chr1 193323782 193323878 -3871554 - ORR1C2 LTR MaLR 0 421 298 7 2059 277 356 95 57 chr1 193323955 193324271 -3871161 - MLT2B1 LTR ERVL -190 330 3 7 2059 1163 62 0 0 chr1 193324326 193324471 -3870961 + B1_Mm SINE Alu 2 146 -1 7 2059 297 75 0 0 chr1 193324471 193324511 -3870921 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 2059 402 74 0 0 chr1 193324736 193324790 -3870642 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 2059 457 321 31 0 chr1 193324791 193324953 -3870479 - B3A SINE B2 -31 167 1 7 2059 3364 99 57 12 chr1 193324971 193325463 -3869969 - L1_Mus3 LINE L1 -9 6629 6116 7 2059 2458 107 44 39 chr1 193325463 193325872 -3869560 + IAPLTR2a LTR ERVK 1 411 0 7 2059 295 91 0 83 chr1 193325874 193325934 -3869498 + IAPEz-int LTR ERVK 3 57 -1930 7 2059 389 102 19 154 chr1 193325942 193326046 -3869386 + IAPEz-int LTR ERVK 23 112 -6369 7 2059 225 339 0 0 chr1 193326046 193326102 -3869330 + RLTR27 LTR ERVK 220 275 -34 7 2059 659 117 29 10 chr1 193326102 193326206 -3869226 + IAPEz-int LTR ERVK 145 250 -7331 7 2059 243 327 0 0 chr1 193326206 193326261 -3869171 + RLTR27 LTR ERVK 221 275 -34 7 2059 1109 172 45 64 chr1 193326261 193326528 -3868904 + IAPEz-int LTR ERVK 168 429 -6052 7 2059 3448 55 0 19 chr1 193326528 193326989 -3868443 + IAPEz-int LTR ERVK 211 662 -5819 7 2059 2146 72 0 0 chr1 193326989 193327267 -3868165 + IAPEz-int LTR ERVK 1359 1636 -4845 7 2059 5714 54 4 21 chr1 193327266 193328025 -3867407 + IAPEz-int LTR ERVK 5736 6481 0 7 2059 2480 105 136 2 chr1 193328025 193328444 -3866988 + IAPLTR2_Mm LTR ERVK 1 475 0 7 2059 4446 67 5 2 chr1 193328445 193329346 -3866086 - L1_Mus3 LINE L1 -518 6120 5218 7 2059 267 146 76 14 chr1 193329367 193329431 -3866001 + B3A SINE B2 1 64 -152 7 2059 1287 89 0 22 chr1 193329449 193329633 -3865799 + B2_Mm2 SINE B2 2 181 -14 7 2059 729 226 20 46 chr1 193329685 193329880 -3865552 + B2_Mm2 SINE B2 4 193 -2 7 2059 1075 76 89 44 chr1 193329881 193330061 -3865371 + B2_Mm2 SINE B2 7 194 -1 7 2059 921 179 99 25 chr1 193330056 193330324 -3865108 + ORR1D1 LTR MaLR 13 342 -42 7 2059 511 286 64 13 chr1 193330343 193330499 -3864933 + B3 SINE B2 50 213 -3 7 2059 181 344 23 54 chr1 193330848 193330977 -3864455 - MIR SINE MIR -67 141 17 7 2059 665 210 71 21 chr1 193331025 193331166 -3864266 - B1F2 SINE Alu -1 148 1 7 2060 303 93 0 0 chr1 193331250 193331293 -3864139 + (GGAGAA)n Simple_repeat Simple_repeat 5 47 0 7 2060 232 286 29 87 chr1 193331522 193331593 -3863839 - RMER17C LTR ERVK -106 304 242 7 2060 561 30 0 0 chr1 193331593 193331660 -3863772 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 2060 232 286 29 87 chr1 193331660 193331726 -3863706 - RMER17C LTR ERVK -169 241 175 7 2060 581 246 22 29 chr1 193331717 193331855 -3863577 - B1_Mur1 SINE Alu -12 137 1 7 2060 4388 158 67 65 chr1 193332424 193332831 -3862601 + RMER19B LTR ERVK 1 415 -487 7 2060 1330 89 16 16 chr1 193332831 193333024 -3862408 + B2_Mm1a SINE B2 1 193 0 7 2060 3990 158 67 65 chr1 193333024 193333500 -3861932 + RMER19B LTR ERVK 416 886 -16 7 2060 1454 61 0 16 chr1 193333500 193333684 -3861748 + B2_Mm2 SINE B2 1 181 -14 7 2060 1828 97 19 0 chr1 193334544 193334811 -3860621 - ORR1A2 LTR MaLR -13 314 43 7 2060 1456 141 442 7 chr1 193334812 193335133 -3860299 + RLTR20B1 LTR ERVK 1 459 -104 7 2060 261 0 0 0 chr1 193335133 193335162 -3860270 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 2060 509 221 72 22 chr1 193335162 193335243 -3860189 + RLTR20B1 LTR ERVK 460 546 -17 7 2060 402 137 3 50 chr1 193335211 193335329 -3860103 - ORR1A2 LTR MaLR -217 112 1 7 2060 215 194 0 0 chr1 193335493 193335529 -3859903 + polypurine Low_complexity Low_complexity 3 38 0 7 2060 291 186 0 33 chr1 193336925 193336986 -3858446 + PB1D9 SINE Alu 1 59 -61 7 2060 593 120 60 0 chr1 193337062 193337162 -3858270 + B1_Mur4 SINE Alu 43 148 -2 7 2060 384 22 0 0 chr1 193337167 193337212 -3858220 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 2060 258 128 0 0 chr1 193337212 193337251 -3858181 + B3A SINE B2 3 41 -157 7 2060 353 348 47 42 chr1 193337254 193337467 -3857965 + B4A SINE B4 75 288 -4 7 2060 426 108 0 0 chr1 193338465 193338530 -3856902 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 2060 583 288 44 0 chr1 193338533 193338693 -3856739 - B3A SINE B2 -30 168 2 7 2060 254 302 142 0 chr1 193338779 193338885 -3856547 + MER2 DNA MER2_type 14 134 -211 7 2060 280 302 12 0 chr1 193339528 193339614 -3855818 - MER58A DNA MER1_type -91 133 47 7 2060 411 297 10 0 chr1 193339616 193339717 -3855715 + PB1D10 SINE Alu 14 115 -2 7 2060 2444 79 31 0 chr1 193340192 193340509 -3854923 - ORR1A2 LTR MaLR 0 327 1 7 2060 627 98 62 9 chr1 193340539 193340652 -3854780 + B2_Mm1t SINE B2 3 121 -72 7 2060 1161 62 14 0 chr1 193340652 193340797 -3854635 + B1_Mm SINE Alu 1 147 0 7 2060 469 294 6 89 chr1 193341079 193341258 -3854174 - RSINE1 SINE B4 0 165 2 7 2060 241 45 0 22 chr1 193342396 193342442 -3852990 + L1_Mus4 LINE L1 6592 6636 0 7 2060 444 37 0 0 chr1 193342846 193342900 -3852532 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 2060 423 0 0 0 chr1 193342900 193342946 -3852486 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 2060 1007 281 51 12 chr1 193343476 193343811 -3851621 - MTE2b LTR MaLR -31 348 1 7 2060 1169 62 14 0 chr1 193343917 193344061 -3851371 - B1_Mm SINE Alu -1 146 1 7 2060 297 306 18 26 chr1 193344081 193344195 -3851237 - L2a LINE L2 -27 3399 3287 7 2060 495 248 16 0 chr1 193344683 193344804 -3850628 - ORR1E LTR MaLR -236 123 1 7 2060 912 130 27 7 chr1 193346028 193346175 -3849257 - B1_Mur4 SINE Alu 0 150 1 7 2060 2035 139 150 67 chr1 193346779 193346868 -3848564 + RLTR31A_Mm LTR ERVK 1 88 -496 7 2060 450 0 0 0 chr1 193346868 193346918 -3848514 + (GA)n Simple_repeat Simple_repeat 2 51 0 7 2060 2035 139 150 67 chr1 193346918 193347336 -3848096 + RLTR31A_Mm LTR ERVK 89 554 -30 7 2060 1541 48 5 0 chr1 193347336 193347523 -3847909 - B2_Mm1t SINE B2 -5 188 1 7 2060 2035 139 150 67 chr1 193347523 193347553 -3847879 + RLTR31A_Mm LTR ERVK 555 582 -2 7 2060 266 220 63 42 chr1 193347828 193347923 -3847509 - L1MD1 LINE L1 -67 6175 6079 7 2060 180 0 0 0 chr1 193347959 193347979 -3847453 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 2060 1194 130 5 50 chr1 193348074 193348276 -3847156 - B2_Mm2 SINE B2 -2 193 1 7 2060 195 42 0 0 chr1 193348415 193348439 -3846993 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 2060 571 268 239 59 chr1 193348451 193348747 -3846685 - L1MD1 LINE L1 -327 5915 5590 7 2060 3061 119 78 20 chr1 193348747 193349246 -3846186 + RLTR12B LTR ERVK 1 528 0 7 2060 571 268 239 59 chr1 193349246 193349261 -3846171 - L1MD1 LINE L1 -653 5589 5586 7 2060 1498 75 16 0 chr1 193349261 193349449 -3845983 + B2_Mm2 SINE B2 2 192 -3 7 2060 571 259 176 40 chr1 193349449 193349715 -3845717 - L1MD1 LINE L1 -657 5585 5236 7 2060 450 185 0 0 chr1 193349727 193349857 -3845575 + CT-rich Low_complexity Low_complexity 2 131 0 7 2060 1201 189 57 11 chr1 193349882 193350144 -3845288 - B4A SINE B4 -18 274 1 7 2060 325 213 113 16 chr1 193350209 193350333 -3845099 - L1MD1 LINE L1 -1016 5130 4995 7 2060 1220 48 7 0 chr1 193350410 193350556 -3844876 + B1_Mm SINE Alu 1 147 0 7 2060 282 39 58 0 chr1 193350556 193350608 -3844824 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 7 2060 640 179 28 50 chr1 193350617 193350758 -3844674 + B1_Mur3 SINE Alu 1 138 -11 7 2060 949 131 7 27 chr1 193350855 193351004 -3844428 + B1_Mus1 SINE Alu 2 147 -1 7 2060 387 41 0 0 chr1 193351034 193351083 -3844349 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 2060 816 281 10 29 chr1 193351354 193351563 -3843869 - B3 SINE B2 -11 205 1 7 2060 379 370 91 13 chr1 193352199 193352506 -3842926 - L1MEc LINE L1 -6030 370 40 7 2060 222 292 56 11 chr1 193352555 193352645 -3842787 - L2 LINE L2 -817 2602 2509 7 2060 27 0 0 0 chr1 193352655 193352682 -3842750 + AT_rich Low_complexity Low_complexity 1 27 0 7 2060 218 29 59 0 chr1 193352683 193352717 -3842715 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 2060 379 92 586 0 chr1 193352717 193352804 -3842628 - B1_Mm SINE Alu -9 138 1 7 2060 836 131 64 28 chr1 193352811 193352829 -3842603 - B1_Mur4 SINE Alu -4 146 121 7 2060 426 20 0 0 chr1 193352829 193352880 -3842552 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 2060 836 131 64 28 chr1 193352880 193353002 -3842430 - B1_Mur4 SINE Alu -30 120 1 7 2060 21 0 0 0 chr1 193353002 193353023 -3842409 + AT_rich Low_complexity Low_complexity 1 21 0 7 2060 479 368 10 5 chr1 193353053 193353258 -3842174 - L2 LINE L2 -956 2463 2258 7 2060 921 139 21 7 chr1 193353780 193353925 -3841507 + B1_Mm SINE Alu 1 147 0 7 2060 314 23 23 0 chr1 193353947 193353990 -3841442 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 2060 266 364 36 31 chr1 193357273 193357466 -3837966 - ORR1E LTR MaLR -162 197 4 8 2060 334 232 276 44 chr1 193357990 193358211 -3837221 - B4A SINE B4 0 292 3 8 2060 22 35 0 0 chr1 193358214 193358243 -3837189 + AT_rich Low_complexity Low_complexity 1 29 0 8 2060 1021 99 14 0 chr1 193358243 193358384 -3837048 - B1_Mus2 SINE Alu -3 144 2 8 2060 1200 68 0 0 chr1 193358421 193358568 -3836864 - B1_Mus2 SINE Alu 0 147 1 8 2060 1198 48 7 0 chr1 193359333 193359479 -3835953 - B1_Mus2 SINE Alu 0 147 1 8 2060 805 177 35 0 chr1 193359484 193359625 -3835807 - B1_Mur4 SINE Alu 0 150 5 8 2060 508 221 30 118 chr1 193359862 193360013 -3835419 - ORR1C2 LTR MaLR -5 379 244 8 2060 2214 184 131 102 chr1 193360013 193360791 -3834641 + RMER12 LTR ERVK 1 1224 -180 8 2060 198 0 0 0 chr1 193360791 193360813 -3834619 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 2060 445 199 49 163 chr1 193360813 193360921 -3834511 + RMER12 LTR ERVK 1225 1305 -99 8 2060 379 248 70 17 chr1 193360931 193361046 -3834386 + RMER12 LTR ERVK 1096 1216 -106 8 2060 990 182 38 47 chr1 193361106 193361342 -3834090 - ORR1C2 LTR MaLR -150 234 1 8 2060 23 0 0 0 chr1 193361994 193362017 -3833415 + AT_rich Low_complexity Low_complexity 1 23 0 8 2060 333 0 0 0 chr1 193362687 193362724 -3832708 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 2060 463 250 0 19 chr1 193363410 193363516 -3831916 + PB1D10 SINE Alu 10 113 -4 8 2060 26 0 0 0 chr1 193364193 193364219 -3831213 + AT_rich Low_complexity Low_complexity 1 26 0 8 2060 216 0 0 0 chr1 193364342 193364366 -3831066 + (A)n Simple_repeat Simple_repeat 1 24 0 8 2060 258 256 38 13 chr1 193365792 193365871 -3829561 - L1MA7 LINE L1 -40 6251 6171 8 2060 1226 42 0 0 chr1 193365969 193366112 -3829320 - B1_Mus1 SINE Alu -5 143 1 8 2060 394 243 19 46 chr1 193366167 193366275 -3829157 - PB1D9 SINE Alu -9 111 7 8 2060 247 242 0 46 chr1 193366222 193366287 -3829145 - B4 SINE B4 -149 143 82 8 2060 222 37 0 0 chr1 193366287 193366314 -3829118 + (A)n Simple_repeat Simple_repeat 1 27 0 8 2060 367 303 35 10 chr1 193366314 193366451 -3828981 + B3A SINE B2 70 209 -7 8 2060 1177 68 74 0 chr1 193366452 193366614 -3828818 + B2_Mm1a SINE B2 1 174 -19 8 2060 674 59 284 0 chr1 193366622 193366724 -3828708 + B1_Mus1 SINE Alu 2 132 -16 8 2060 227 31 31 0 chr1 193366727 193366759 -3828673 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 8 2060 483 266 9 0 chr1 193366916 193367025 -3828407 + PB1D10 SINE Alu 3 112 -5 8 2060 680 231 131 50 chr1 193367066 193367348 -3828084 - L1M2 LINE L1 -504 5787 5481 8 2060 265 221 79 5 chr1 193367350 193367446 -3827986 - PB1 SINE Alu -3 124 6 8 2060 441 229 262 44 chr1 193368241 193368401 -3827031 + B3 SINE B2 2 196 -20 8 2060 1174 68 0 0 chr1 193369264 193369412 -3826020 + B1_Mus1 SINE Alu 1 148 0 8 2060 220 179 0 25 chr1 193369523 193369563 -3825869 - PB1D9 SINE Alu -75 45 7 8 2060 193 270 94 57 chr1 193369665 193369771 -3825661 + L2a LINE L2 3012 3121 -305 8 2060 1149 112 90 0 chr1 193370023 193370201 -3825231 + B2_Mm2 SINE B2 2 195 0 8 2060 387 0 0 0 chr1 193370295 193370338 -3825094 + (CCA)n Simple_repeat Simple_repeat 1 43 0 8 2060 383 258 94 21 chr1 193370725 193370859 -3824573 - B3 SINE B2 -74 142 3 8 2060 309 268 46 11 chr1 193371558 193371645 -3823787 - B4A SINE B4 -200 92 3 8 2060 28 29 0 0 chr1 193371673 193371708 -3823724 + AT_rich Low_complexity Low_complexity 1 35 0 8 2060 558 206 26 90 chr1 193371744 193371899 -3823533 - B3A SINE B2 -52 146 2 8 2060 556 89 33 2 chr1 193373695 193373802 -3821630 - B1_Mus1 SINE Alu 0 120 2 8 2060 371 259 106 25 chr1 193373900 193374098 -3821334 + L1MB5 LINE L1 5753 5966 -208 8 2060 279 216 0 19 chr1 193374144 193374196 -3821236 - ID SINE ID -147 77 27 8 2060 201 74 0 0 chr1 193374510 193374537 -3820895 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 8 2060 22 0 0 0 chr1 193375245 193375267 -3820165 + AT_rich Low_complexity Low_complexity 1 22 0 8 2060 1354 198 77 72 chr1 193375848 193376251 -3819181 + RLTR17 LTR ERVK 105 509 -183 8 2060 184 173 0 55 chr1 193377091 193377146 -3818286 + A-rich Low_complexity Low_complexity 1 52 0 8 2060 1458 59 27 0 chr1 193377167 193377353 -3818079 + B2_Mm1a SINE B2 2 192 -1 8 2060 248 59 0 0 chr1 193377668 193377702 -3817730 - B1_Mus2 SINE Alu -21 126 93 8 2060 379 224 35 12 chr1 193377923 193378009 -3817423 + B3 SINE B2 17 104 -112 8 2060 1594 43 0 0 chr1 193378161 193378346 -3817086 - B2_Mm1a SINE B2 -7 186 2 8 2060 824 158 43 0 chr1 193378389 193378528 -3816904 - B1_Mus1 SINE Alu 0 148 4 8 2060 382 295 0 11 chr1 193378677 193378766 -3816666 - B1F1 SINE Alu -61 88 1 8 2060 491 226 33 42 chr1 193378937 193379057 -3816375 - PB1D9 SINE Alu -1 119 1 8 2060 736 208 198 46 chr1 193379921 193380158 -3815274 - B4A SINE B4 -18 274 2 8 2060 1013 205 5 0 chr1 193380804 193380994 -3814438 - URR1A DNA MER1_type 0 226 36 8 2060 898 225 194 23 chr1 193382109 193382500 -3812932 + Lx9 LINE L1 7166 7623 -21 8 2060 694 196 27 20 chr1 193382525 193382671 -3812761 + B1_Mur1 SINE Alu 2 148 -1 8 2060 499 287 34 34 chr1 193382705 193382853 -3812579 + RSINE1 SINE B4 8 155 -10 8 2060 694 238 0 20 chr1 193382833 193382983 -3812449 - RSINE1 SINE B4 -17 148 2 8 2060 436 278 60 34 chr1 193383066 193383215 -3812217 + RSINE1 SINE B4 9 161 -4 8 2060 948 151 175 10 chr1 193384280 193384474 -3810958 - URR1A DNA MER1_type 0 226 1 8 2060 328 238 47 59 chr1 193385143 193385228 -3810204 + B1F SINE Alu 10 93 -56 8 2060 391 291 19 19 chr1 193385541 193385646 -3809786 + RSINE1 SINE B4 10 114 -51 8 2060 320 254 100 20 chr1 193385748 193385909 -3809523 + L1MC1 LINE L1 5689 5857 -455 8 2060 610 239 152 26 chr1 193385921 193386218 -3809214 + L1MC1 LINE L1 5992 6311 -22 8 2060 1207 48 7 0 chr1 193386220 193386365 -3809067 + B1_Mus1 SINE Alu 2 147 -1 8 2060 252 158 0 34 chr1 193386365 193386424 -3809008 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 8 2060 382 224 148 9 chr1 193386591 193386699 -3808733 - RSINE1 SINE B4 -37 128 6 8 2060 286 208 0 19 chr1 193387435 193387489 -3807943 + ID4 SINE ID 1 53 -30 8 2060 1318 308 59 40 chr1 193388007 193388531 -3806901 + Lx9 LINE L1 6928 7461 -183 8 2060 261 0 0 0 chr1 193389791 193389820 -3805612 + (A)n Simple_repeat Simple_repeat 1 29 0 8 2060 1592 53 0 0 chr1 193389878 193390066 -3805366 + B2_Mm1a SINE B2 1 188 -5 8 2060 762 88 128 0 chr1 193390102 193390227 -3805205 - B2_Mm2 SINE B2 -54 141 1 8 2060 326 273 141 0 chr1 193390785 193390884 -3804548 + PB1D10 SINE Alu 3 115 -2 8 2060 338 261 49 0 chr1 193390971 193391078 -3804354 + PB1D9 SINE Alu 2 113 -7 8 2060 299 258 8 77 chr1 193391122 193391252 -3804180 + RLTR11B LTR ERVK 5 125 -402 8 2060 585 237 0 40 chr1 193391266 193391442 -3803990 + RLTR11B LTR ERVK 94 262 -191 8 2060 304 285 92 52 chr1 193391529 193391703 -3803729 + RLTR11B LTR ERVK 273 453 0 8 2060 682 212 141 16 chr1 193391820 193392012 -3803420 + B3 SINE B2 1 216 0 8 2060 1850 141 51 17 chr1 193392527 193392881 -3802551 + ORR1B1 LTR MaLR 29 394 0 8 2060 297 261 11 11 chr1 193393012 193393101 -3802331 + B4A SINE B4 7 95 -197 8 2060 476 274 0 0 chr1 193393118 193393224 -3802208 + B4A SINE B4 184 289 -3 8 2060 831 182 99 131 chr1 193393712 193393770 -3801662 + B3 SINE B2 2 52 -164 8 2060 1140 56 14 7 chr1 193393770 193393915 -3801517 + B1_Mm SINE Alu 2 147 0 8 2060 831 182 99 131 chr1 193393915 193394077 -3801355 + B3 SINE B2 53 215 -1 8 2060 432 133 43 32 chr1 193394687 193394780 -3800652 - B1_Mus2 SINE Alu 0 147 54 8 2060 216 0 0 0 chr1 193394861 193394885 -3800547 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 2060 624 208 44 37 chr1 193394889 193395024 -3800408 - B1_Mur1 SINE Alu -13 136 1 8 2060 952 63 0 0 chr1 193396153 193396280 -3799152 + B1_Mm SINE Alu 1 127 -20 8 2060 1050 104 24 12 chr1 193396800 193396965 -3798467 + B2_Mm2 SINE B2 15 181 -14 8 2060 693 104 19 0 chr1 193396974 193397080 -3798352 - PB1D9 SINE Alu 0 120 13 8 2060 189 0 0 0 chr1 193397089 193397110 -3798322 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 2060 584 282 163 16 chr1 193397182 193397668 -3797764 + Charlie2b DNA MER1_type 2154 2710 -72 8 2060 688 163 8 8 chr1 193400641 193400765 -3794667 - RMER10B LTR ERVL -270 128 5 8 2060 285 262 140 0 chr1 193400809 193400916 -3794516 - ID_B1 SINE B4 -32 192 71 8 2060 415 194 46 46 chr1 193401182 193401290 -3794142 + B3A SINE B2 3 110 -88 8 2060 3446 20 13 0 chr1 193402587 193402978 -3792454 - MTA_Mm LTR MaLR 0 396 1 8 2060 371 263 105 0 chr1 193403624 193403738 -3791694 + B1_Mur2 SINE Alu 2 127 -22 8 2060 797 225 62 0 chr1 193403919 193404097 -3791335 + B3 SINE B2 1 189 -27 8 2060 1249 34 0 0 chr1 193404212 193404359 -3791073 - B1_Mm SINE Alu 0 147 1 8 2060 1368 145 280 10 chr1 193404431 193404731 -3790701 - ORR1C2 LTR MaLR -3 381 1 8 2060 485 257 111 31 chr1 193404757 193404982 -3790450 - L1M5 LINE L1 -3086 3060 2818 8 2060 356 353 29 0 chr1 193405121 193405257 -3790175 - B1F1 SINE Alu -9 140 1 8 2060 544 224 184 13 chr1 193405373 193405531 -3789901 + B3A SINE B2 1 185 -10 8 2060 435 224 75 0 chr1 193405638 193405745 -3789687 - ID_B1 SINE B4 -19 205 91 8 2060 231 278 81 27 chr1 193405646 193405757 -3789675 - B1_Mus1 SINE Alu -30 118 2 9 2060 202 95 23 45 chr1 193405788 193405832 -3789600 + T-rich Low_complexity Low_complexity 4 46 0 9 2060 1391 79 32 5 chr1 193405953 193406143 -3789289 - B2_Mm2 SINE B2 0 195 1 9 2060 247 341 12 12 chr1 193407439 193407525 -3787907 - B1F1 SINE Alu -63 86 1 9 2060 701 254 79 5 chr1 193407784 193407974 -3787458 + ID_B1 SINE B4 1 204 -20 9 2060 723 104 181 16 chr1 193408007 193408134 -3787298 + B1_Mus1 SINE Alu 1 148 0 9 2060 407 183 18 88 chr1 193408243 193408357 -3787075 + PB1D7 SINE Alu 15 120 0 9 2060 288 236 177 26 chr1 193408257 193408370 -3787062 + B4A SINE B4 114 243 -49 9 2060 584 245 97 0 chr1 193408464 193408619 -3786813 - B3 SINE B2 -10 206 37 9 2060 22 35 0 0 chr1 193408787 193408816 -3786616 + AT_rich Low_complexity Low_complexity 1 29 0 9 2060 359 215 110 18 chr1 193409228 193409337 -3786095 - PB1D9 SINE Alu -1 119 1 9 2060 270 0 0 0 chr1 193409556 193409586 -3785846 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 2060 192 125 0 0 chr1 193409586 193409618 -3785814 + (CATG)n Simple_repeat Simple_repeat 1 32 0 9 2060 372 293 34 8 chr1 193409628 193409745 -3785687 - RSINE1 SINE B4 -45 120 1 9 2060 364 227 133 26 chr1 193410936 193411049 -3784383 - B4 SINE B4 -166 126 2 9 2060 818 256 10 10 chr1 193411056 193411253 -3784179 - B3A SINE B2 0 198 2 9 2060 713 153 105 15 chr1 193411263 193411396 -3784036 - B1_Mur2 SINE Alu -3 146 2 9 2060 229 242 53 42 chr1 193411518 193411613 -3783819 + L1M5 LINE L1 5565 5660 -464 9 2060 583 251 185 4 chr1 193411910 193412142 -3783290 - Lx8 LINE L1 -275 7198 6925 9 2060 204 158 26 0 chr1 193412355 193412393 -3783039 + (TTG)n Simple_repeat Simple_repeat 1 39 0 9 2060 354 267 0 0 chr1 193412708 193412783 -3782649 + ID4 SINE ID 5 79 -4 9 2060 768 261 123 31 chr1 193412820 193413081 -3782351 - RMER15 LTR ERVL 0 575 291 9 2060 1476 55 16 11 chr1 193413190 193413375 -3782057 - B2_Mm2 SINE B2 -5 190 5 9 2060 644 183 0 40 chr1 193413663 193413788 -3781644 + PB1D9 SINE Alu 1 120 0 9 2060 22 56 0 0 chr1 193414131 193414167 -3781265 + AT_rich Low_complexity Low_complexity 1 36 0 9 2060 341 290 43 0 chr1 193414881 193414974 -3780458 - B1F1 SINE Alu -51 98 2 9 2060 251 330 9 48 chr1 193414974 193414986 -3780446 - ID_B1 SINE B4 -48 176 76 9 2060 324 246 199 21 chr1 193415026 193415217 -3780215 - Charlie1 DNA MER1_type -193 2588 2364 9 2060 244 371 35 15 chr1 193415339 193415539 -3779893 - Charlie1 DNA MER1_type -731 2050 1847 9 2060 331 327 84 75 chr1 193415609 193415930 -3779502 - Charlie1 DNA MER1_type -1137 1644 1321 9 2060 709 267 6 0 chr1 193416076 193416237 -3779195 - B3 SINE B2 -44 172 11 9 2060 256 316 44 22 chr1 193416233 193416369 -3779063 - Charlie1 DNA MER1_type -1809 972 834 9 2060 227 184 159 11 chr1 193417431 193417519 -3777913 - Charlie1 DNA MER1_type -2542 239 139 9 2060 964 167 0 0 chr1 193418035 193418185 -3777247 + B1_Mur4 SINE Alu 1 150 0 9 2060 205 205 0 0 chr1 193419121 193419160 -3776272 + T-rich Low_complexity Low_complexity 1 39 0 9 2060 1031 224 9 0 chr1 193419275 193419489 -3775943 - B3 SINE B2 0 216 1 9 2060 679 203 16 0 chr1 193419705 193419833 -3775599 + B1_Mur1 SINE Alu 2 131 -18 9 2060 399 92 0 0 chr1 193420392 193420457 -3774975 + (TC)n Simple_repeat Simple_repeat 1 65 0 9 2060 450 268 109 17 chr1 193421087 193421262 -3774170 - B3A SINE B2 -7 191 1 9 2060 1034 187 50 27 chr1 193421326 193421546 -3773886 + URR1B DNA MER1_type 1 225 0 9 2060 1112 45 0 0 chr1 193421608 193421740 -3773692 + B1_Mus2 SINE Alu 3 134 -13 9 2060 275 0 29 0 chr1 193421740 193421775 -3773657 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 9 2060 325 203 43 0 chr1 193421827 193421896 -3773536 + Lx8 LINE L1 7051 7122 -351 9 2060 388 296 24 48 chr1 193422755 193422922 -3772510 - RSINE1 SINE B4 -2 163 1 9 2060 822 93 20 41 chr1 193424012 193424158 -3771274 + RMER6A LTR ERVK 4 146 -610 9 2060 733 231 0 0 chr1 193425084 193425227 -3770205 + B1_Mur3 SINE Alu 5 147 -2 9 2060 25 31 0 0 chr1 193425318 193425350 -3770082 + AT_rich Low_complexity Low_complexity 1 32 0 9 2060 1187 69 93 44 chr1 193425647 193425830 -3769602 + B2_Mm2 SINE B2 2 193 -2 9 2060 230 252 169 25 chr1 193425882 193426000 -3769432 - L1MC3 LINE L1 -195 7590 7456 9 2060 480 213 147 73 chr1 193427029 193427164 -3768268 + URR1A DNA MER1_type 16 170 -56 9 2060 381 43 0 0 chr1 193427164 193427211 -3768221 + (CATA)n Simple_repeat Simple_repeat 2 48 0 9 2060 480 213 147 73 chr1 193427211 193427252 -3768180 + URR1A DNA MER1_type 171 205 -21 9 2060 1481 69 5 0 chr1 193428037 193428226 -3767206 - B2_Mm1a SINE B2 -1 192 3 9 2060 237 279 33 0 chr1 193430163 193430224 -3765208 - MER58B DNA MER1_type -54 287 225 9 2060 1549 189 70 7 chr1 193430253 193430552 -3764880 - Lx9 LINE L1 -772 6872 6555 9 2060 262 304 25 0 chr1 193432059 193432138 -3763294 + ID4_ SINE ID 2 82 -1 9 2060 365 297 0 48 chr1 193432171 193432295 -3763137 - PB1D7 SINE Alu -2 118 1 9 2060 1062 284 18 29 chr1 193432322 193432601 -3762831 - Lx6 LINE L1 -295 7165 6890 9 2060 342 171 343 0 chr1 193432795 193432900 -3762532 + B1_Mur1 SINE Alu 3 143 -6 9 2060 460 291 89 8 chr1 193432958 193433194 -3762238 - MTEb LTR MaLR -46 333 79 9 2060 2122 156 48 16 chr1 193433212 193433590 -3761842 - MTC LTR MaLR 0 421 32 9 2060 298 160 0 0 chr1 193433609 193433659 -3761773 - MTC LTR MaLR -329 50 1 9 2060 356 284 138 0 chr1 193434040 193434156 -3761276 - RSINE1 SINE B4 -31 134 3 9 2060 1330 221 63 3 chr1 193434485 193434834 -3760598 - ORR1C2 LTR MaLR 0 384 15 9 2060 1517 57 5 10 chr1 193435096 193435290 -3760142 + B2_Mm1a SINE B2 1 193 0 9 2060 274 333 18 65 chr1 193436577 193436747 -3758685 - MER2B DNA MER2_type 0 336 175 9 2060 859 153 0 8 chr1 193437826 193437958 -3757474 - B1_Mus1 SINE Alu -17 131 1 9 2060 360 0 0 0 chr1 193438342 193438382 -3757050 + (ATTG)n Simple_repeat Simple_repeat 1 40 0 9 2060 261 301 106 19 chr1 193439349 193439478 -3755954 + MIRc SINE MIR 13 153 -115 9 2060 1208 42 0 0 chr1 193439798 193439940 -3755492 + B1_Mus2 SINE Alu 1 142 -5 9 2060 254 320 41 52 chr1 193440124 193440394 -3755038 - RLTR12B LTR ERVK -231 297 31 9 2060 222 281 0 0 chr1 193440676 193440733 -3754699 + MER5B DNA MER1_type 1 57 -121 9 2060 225 298 192 32 chr1 193440896 193441021 -3754411 + Tigger5 DNA MER2_type 2261 2405 -1 9 2060 191 234 21 0 chr1 193441021 193441068 -3754364 - MER5B DNA MER1_type -125 53 6 9 2060 259 138 56 84 chr1 193441120 193441191 -3754241 + RLTR25B LTR ERVK 428 496 -532 9 2060 696 48 0 54 chr1 193441133 193441244 -3754188 + B1_Mus2 SINE Alu 43 147 0 9 2060 616 189 74 0 chr1 193441290 193441412 -3754020 - B1_Mur3 SINE Alu -9 140 10 9 2060 637 174 19 39 chr1 193441423 193441578 -3753854 - B2_Mm2 SINE B2 -8 187 36 9 2060 367 153 63 126 chr1 193441865 193441992 -3753440 + RSINE1 SINE B4 47 165 0 9 2060 261 0 0 0 chr1 193441992 193442021 -3753411 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 2060 680 87 0 19 chr1 193442676 193442781 -3752651 + B1_Mus1 SINE Alu 7 109 -39 9 2060 1126 74 0 13 chr1 193443000 193443150 -3752282 + B1_Mus1 SINE Alu 1 148 0 9 2060 707 233 127 67 chr1 193444335 193444588 -3750844 + B4A SINE B4 24 291 -1 9 2060 210 37 0 0 chr1 193445480 193445507 -3749925 + (TTG)n Simple_repeat Simple_repeat 2 28 0 9 2060 1093 45 0 0 chr1 193445570 193445704 -3749728 - B1_Mus1 SINE Alu 0 148 15 9 2060 195 42 0 0 chr1 193447158 193447182 -3748250 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 9 2060 775 130 55 55 chr1 193447182 193447328 -3748104 - B1_Mus2 SINE Alu 0 147 2 9 2060 199 277 193 0 chr1 193447855 193447938 -3747494 + MIR SINE MIR 21 119 -143 9 2060 2161 126 104 3 chr1 193447939 193448313 -3747119 - MTC LTR MaLR -9 412 1 9 2060 192 229 62 0 chr1 193449989 193450037 -3745395 - L3 LINE CR1 -584 3905 3855 9 2060 678 13 0 0 chr1 193450588 193450667 -3744765 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 9 2060 465 198 0 11 chr1 193450685 193450772 -3744660 + B4A SINE B4 1 86 -206 9 2060 506 261 18 1 chr1 193450811 193450939 -3744493 + B4A SINE B4 82 212 -80 9 2060 488 138 69 0 chr1 193450945 193451032 -3744400 - B2_Mm2 SINE B2 0 195 103 9 2060 606 118 0 0 chr1 193451245 193451338 -3744094 + (TAAA)n Simple_repeat Simple_repeat 1 93 0 9 2060 851 134 6 0 chr1 193451391 193451570 -3743862 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 2060 485 291 26 0 chr1 193453806 193453923 -3741509 + ID_B1 SINE B4 74 193 -31 9 2060 219 218 0 0 chr1 193453923 193453978 -3741454 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 2060 22 35 0 0 chr1 193454253 193454282 -3741150 + AT_rich Low_complexity Low_complexity 1 29 0 9 2060 775 171 47 0 chr1 193455288 193455417 -3740015 + B3A SINE B2 4 138 -60 9 2060 339 65 0 0 chr1 193455417 193455463 -3739969 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 2060 542 241 28 76 chr1 193455463 193455477 -3739955 + B2_Mm2 SINE B2 126 139 -56 9 2060 446 253 192 7 chr1 193455478 193455629 -3739803 + ID_B1 SINE B4 36 214 -10 9 2060 243 175 0 0 chr1 193455643 193455700 -3739732 + (CTAA)n Simple_repeat Simple_repeat 1 57 0 9 2060 781 124 60 81 chr1 193456156 193456171 -3739261 - B1_Mus1 SINE Alu 0 148 139 9 2060 281 47 23 0 chr1 193456171 193456214 -3739218 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 9 2060 781 124 60 81 chr1 193456214 193456347 -3739085 - B1_Mus1 SINE Alu -10 138 3 9 2060 406 259 18 44 chr1 193457383 193457496 -3737936 - PB1D7 SINE Alu -10 110 1 1 2060 210 118 0 0 chr1 193458854 193458888 -3736544 + (CAATT)n Simple_repeat Simple_repeat 5 38 0 1 2060 230 347 55 31 chr1 193459426 193459554 -3735878 - MER5A DNA MER1_type -4 185 55 1 2060 316 253 47 24 chr1 193459662 193459747 -3735685 + PB1D7 SINE Alu 4 90 -30 1 2060 45 19 0 0 chr1 193459800 193459852 -3735580 + AT_rich Low_complexity Low_complexity 1 52 0 1 2060 343 304 38 0 chr1 193459908 193460042 -3735390 - PB1D10 SINE Alu -3 146 1 1 2060 1026 202 19 15 chr1 193460101 193460307 -3735125 - B3 SINE B2 -7 209 3 1 2060 456 324 84 23 chr1 193460361 193460576 -3734856 + MIR SINE MIR 14 241 -21 1 2060 355 299 157 65 chr1 193460661 193460995 -3734437 - MLT1G1 LTR MaLR -172 407 1 1 2060 509 243 9 18 chr1 193461146 193461259 -3734173 - B1_Mur4 SINE Alu -1 149 38 1 2060 582 15 0 0 chr1 193461359 193461426 -3734006 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 1 2060 772 241 90 5 chr1 193461465 193461653 -3733779 + B3 SINE B2 1 204 -12 1 2061 1000 266 129 72 chr1 193462484 193462860 -3732572 + MTD LTR MaLR 1 419 0 1 2061 853 280 66 15 chr1 193464524 193464796 -3730636 - B4A SINE B4 -6 286 1 1 2061 283 299 83 64 chr1 193464848 193465005 -3730427 - RSINE1 SINE B4 -2 163 4 1 2061 405 0 0 0 chr1 193465108 193465153 -3730279 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 2061 245 188 12 0 chr1 193465155 193465240 -3730192 + GA-rich Low_complexity Low_complexity 1 86 0 1 2061 1455 80 16 0 chr1 193466155 193466343 -3729089 - B2_Mm2 SINE B2 -4 191 1 1 2061 903 156 0 39 chr1 193466436 193466590 -3728842 + B1_Mur2 SINE Alu 2 149 0 1 2061 27 0 0 0 chr1 193466590 193466617 -3728815 + AT_rich Low_complexity Low_complexity 1 27 0 1 2061 839 141 211 17 chr1 193466617 193466797 -3728635 + B3 SINE B2 2 216 0 1 2061 409 199 181 60 chr1 193466825 193466991 -3728441 + L1MA8 LINE L1 5815 6000 -291 1 2061 428 277 25 108 chr1 193467436 193467594 -3727838 + ID_B1 SINE B4 80 224 0 1 2061 459 308 195 34 chr1 193468227 193468519 -3726913 + MLT1J-int LTR MaLR 618 956 -431 1 2061 799 258 57 0 chr1 193469311 193469555 -3725877 + L1MA7 LINE L1 5764 6021 -270 1 2061 257 148 34 34 chr1 193470586 193470733 -3724699 + (CCTA)n Simple_repeat Simple_repeat 4 150 0 1 2061 276 317 0 0 chr1 193470736 193470840 -3724592 + (CCCA)n Simple_repeat Simple_repeat 1 104 0 1 2061 310 96 0 160 chr1 193470840 193471052 -3724380 + (CCTAT)n Simple_repeat Simple_repeat 2 179 0 1 2061 358 165 115 115 chr1 193471064 193471160 -3724272 + PB1D10 SINE Alu 22 117 0 1 2061 447 235 10 19 chr1 193471162 193471266 -3724166 + B4A SINE B4 1 103 -189 1 2061 947 153 0 0 chr1 193471346 193471490 -3723942 - B1_Mus2 SINE Alu -1 146 3 1 2061 427 297 0 0 chr1 193471843 193471944 -3723488 - ID_B1 SINE B4 -38 186 86 1 2061 342 0 0 0 chr1 193472024 193472062 -3723370 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 2061 4164 335 31 47 chr1 193472577 193474648 -3720784 - RodERV21-int LTR ERV1 -198 4793 2756 1 2061 363 320 20 17 chr1 193474753 193475150 -3720282 - RodERV21-int LTR ERV1 -2684 4872 4760 1 2061 376 276 55 70 chr1 193475593 193475850 -3719582 - RodERV21-int LTR ERV1 -1987 5104 4852 1 2061 621 325 45 55 chr1 193476625 193477119 -3718313 - RodERV21-int LTR ERV1 -3017 4074 3586 1 2061 6257 246 18 29 chr1 193477241 193477508 -3717924 - RodERV21-int LTR ERV1 -2273 2718 2455 1 2061 3547 28 0 0 chr1 193477508 193477904 -3717528 + MTA_Mm LTR MaLR 1 396 0 1 2061 8419 59 20 7 chr1 193477904 193478987 -3716445 + MTA_Mm-int LTR MaLR 1 1098 0 1 2061 3340 30 2 57 chr1 193478987 193479406 -3716026 + MTA_Mm LTR MaLR 1 396 0 1 2061 6257 246 18 29 chr1 193479406 193480619 -3714813 - RodERV21-int LTR ERV1 -2537 2454 1255 1 2061 273 320 0 37 chr1 193481164 193481271 -3714161 - Tigger6a DNA MER2_type -131 952 850 1 2061 834 316 221 52 chr1 193481313 193481910 -3713522 - Tigger6a DNA MER2_type -385 698 1 1 2061 227 290 0 28 chr1 193481938 193482009 -3713423 - MIR SINE MIR -123 139 71 1 2061 2312 101 3 16 chr1 193482485 193482808 -3712624 - ORR1A2 LTR MaLR -8 319 1 1 2061 1052 268 101 108 chr1 193482808 193483325 -3712107 - RLTR18 LTR ERVK -32 584 72 1 2061 346 138 0 71 chr1 193483393 193483463 -3711969 - RLTR18 LTR ERVK -551 65 1 1 2061 245 321 68 82 chr1 193484152 193484298 -3711134 + MLT1K LTR MaLR 55 198 -397 1 2061 252 86 0 0 chr1 193484402 193484437 -3710995 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 1 2061 2639 131 63 26 chr1 193485050 193485513 -3709919 - RLTR28B LTR ERVL 0 481 2 1 2061 343 336 74 74 chr1 193485815 193485994 -3709438 - Charlie20a DNA Charlie -63 744 566 1 2061 691 131 146 0 chr1 193485994 193486124 -3709308 + B1_Mur3 SINE Alu 1 149 0 1 2061 343 336 74 74 chr1 193486124 193486294 -3709138 - Charlie20a DNA Charlie -242 565 395 1 2061 393 232 0 34 chr1 193486695 193486784 -3708648 + MTE2a LTR MaLR 271 356 -23 1 2061 564 265 146 143 chr1 193487805 193487877 -3707555 + MLT1B LTR MaLR 4 72 -395 1 2061 1331 77 27 11 chr1 193487877 193488061 -3707371 + B2_Mm1t SINE B2 2 188 -5 1 2061 665 265 146 143 chr1 193488061 193488321 -3707111 + MLT1B LTR MaLR 73 347 -120 1 2061 2338 72 3 0 chr1 193488321 193488625 -3706807 - L1_Mus1 LINE L1 -4 6563 6259 1 2061 665 273 10 176 chr1 193488625 193488723 -3706709 + MLT1B LTR MaLR 271 359 -31 1 2061 234 0 0 0 chr1 193488779 193488805 -3706627 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 2061 1232 41 0 0 chr1 193488872 193489018 -3706414 + B1_Mus2 SINE Alu 2 147 0 1 2061 270 0 0 0 chr1 193489018 193489048 -3706384 + (A)n Simple_repeat Simple_repeat 1 30 0 1 2061 905 303 59 55 chr1 193489477 193489600 -3705832 - BGLII_B LTR ERVK -17 424 301 1 2061 1230 105 71 6 chr1 193489600 193489782 -3705650 - B2_Mm2 SINE B2 0 195 2 1 2061 905 303 59 55 chr1 193489782 193490080 -3705352 - BGLII_B LTR ERVK -141 300 2 1 2061 246 282 155 0 chr1 193490717 193490788 -3704644 - ID4_ SINE ID 0 83 2 1 2061 311 193 104 68 chr1 193490801 193490908 -3704524 - MLT1A1 LTR MaLR -21 387 239 1 2061 280 140 20 20 chr1 193490917 193490968 -3704464 + RLTR25B LTR ERVK 435 485 -543 1 2061 599 57 159 0 chr1 193490930 193491018 -3704414 + B1_Mus2 SINE Alu 46 147 0 1 2061 273 57 0 0 chr1 193491020 193491055 -3704377 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 2061 265 278 99 40 chr1 193491191 193491292 -3704140 - ORR1E LTR MaLR -215 144 38 1 2061 319 233 7 7 chr1 193493183 193493334 -3702098 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 2061 585 119 0 0 chr1 193493351 193493452 -3701980 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 2061 918 158 0 0 chr1 193494105 193494244 -3701188 - B1_Mur3 SINE Alu 0 149 11 1 2061 964 109 65 0 chr1 193494270 193494408 -3701024 - B1_Mus1 SINE Alu 0 148 2 1 2061 780 164 24 0 chr1 193494454 193494595 -3700837 + B1_Mur2 SINE Alu 5 149 0 1 2061 1025 155 6 23 chr1 193494599 193494775 -3700657 - ORR1B1 LTR MaLR -12 407 210 1 2061 679 115 48 0 chr1 193494773 193494877 -3700555 + ORR1B1 LTR MaLR 102 210 -184 1 2061 527 262 24 51 chr1 193494941 193495159 -3700273 - L1M2 LINE L1 -831 5055 4864 1 2061 291 295 0 62 chr1 193495187 193495204 -3700228 - CYRA11_Mm Unknown Y-chromosome -328 289 172 1 2061 554 183 0 46 chr1 193495204 193495313 -3700119 + URR1B DNA MER1_type 121 224 -1 1 2061 459 0 0 0 chr1 193495336 193495387 -3700045 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 2061 2727 261 97 15 chr1 193495392 193495595 -3699837 - L1_Mur3 LINE L1 -1289 4591 4375 1 2061 438 53 0 0 chr1 193495595 193495652 -3699780 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 2061 2727 261 97 15 chr1 193495652 193496557 -3698875 - L1_Mur3 LINE L1 -1506 4374 3394 1 2061 407 239 0 0 chr1 193496912 193496983 -3698449 + ID4_ SINE ID 2 72 -11 1 2061 213 318 60 60 chr1 193496983 193497029 -3698403 + B3A SINE B2 2 118 -80 1 2061 197 293 52 0 chr1 193497517 193497575 -3697857 + MIRc SINE MIR 155 215 -53 1 2061 218 291 64 55 chr1 193497664 193497773 -3697659 + MIRb SINE MIR 125 234 -34 1 2061 1213 61 0 0 chr1 193498704 193498851 -3696581 - B1_Mus1 SINE Alu 0 148 2 1 2061 1208 48 0 7 chr1 193498879 193499025 -3696407 + B1_Mm SINE Alu 1 145 -2 1 2061 484 288 71 1 chr1 193499199 193499391 -3696041 + L1MC LINE L1 5026 5230 -916 1 2061 353 270 55 130 chr1 193499391 193499468 -3695964 + MT2B LTR ERVL 94 155 -446 1 2061 696 179 32 23 chr1 193499468 193499608 -3695824 + B1_Mur4 SINE Alu 1 140 -10 1 2061 306 148 0 0 chr1 193499652 193499706 -3695726 + (A)n Simple_repeat Simple_repeat 1 54 0 1 2061 24 67 0 0 chr1 193500116 193500161 -3695271 + AT_rich Low_complexity Low_complexity 1 45 0 1 2061 372 275 132 41 chr1 193500161 193500404 -3695028 + L1MC LINE L1 5319 5583 -761 2 2061 714 45 2 1 chr1 193500405 193500505 -3694927 + B2_Mm2 SINE B2 1 101 -97 3 2061 1109 68 12 18 chr1 193500612 193500778 -3694654 - B2_Mm2 SINE B2 -6 189 25 4 2061 1890 166 96 3 chr1 193500779 193501154 -3694278 + MYSERV6-int LTR ERVK 8386 8795 -164 5 2061 9250 192 43 69 chr1 193501147 193501947 -3693485 - MYSERV6-int LTR ERVK -749 5031 3854 6 2061 1213 103 0 11 chr1 193501947 193502105 -3693327 + B2_Mm2 SINE B2 2 159 -36 7 2061 342 0 0 0 chr1 193502105 193502143 -3693289 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 8 2061 1213 103 0 11 chr1 193502143 193502161 -3693271 + B2_Mm2 SINE B2 160 176 -19 7 2061 9250 135 47 58 chr1 193502161 193502534 -3692898 - MYSERV6-int LTR ERVK -5106 3853 3473 6 2061 279 0 0 0 chr1 193502534 193502565 -3692867 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 2061 9250 135 47 58 chr1 193502565 193502712 -3692720 - MYSERV6-int LTR ERVK -5487 3472 3333 6 2061 1155 68 7 0 chr1 193502712 193502858 -3692574 - B1_Mus1 SINE Alu 0 148 2 1 2061 9250 135 47 58 chr1 193502858 193503131 -3692301 - MYSERV6-int LTR ERVK -5627 3332 3077 6 2061 1123 84 0 0 chr1 193503131 193503273 -3692159 + B1_Mus1 SINE Alu 1 142 -6 1 2061 222 37 0 0 chr1 193503275 193503302 -3692130 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 2061 9250 135 47 58 chr1 193503302 193503851 -3691581 - MYSERV6-int LTR ERVK -5883 3076 2511 6 2061 306 0 0 0 chr1 193503851 193503885 -3691547 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 2061 1164 64 0 0 chr1 193503889 193504030 -3691402 - B1_Mus2 SINE Alu -6 141 1 1 2061 9250 135 47 58 chr1 193504030 193504085 -3691347 - MYSERV6-int LTR ERVK -6449 2510 2459 6 2061 1672 119 150 12 chr1 193504312 193504367 -3691065 + RLTR11B LTR ERVK 67 135 -318 1 2061 2732 46 0 0 chr1 193504367 193504695 -3690737 + L1Md_A LINE L1 6255 6582 0 1 2061 1672 119 150 12 chr1 193504695 193504979 -3690453 + RLTR11B LTR ERVK 136 453 0 1 2061 415 252 23 52 chr1 193505164 193505336 -3690096 - RMER17C LTR ERVK -243 167 1 1 2061 2951 271 85 59 chr1 193506356 193507847 -3687585 + MYSERV16_I-int LTR ERVK 1 1047 -1279 1 2061 3192 25 0 0 chr1 193507847 193508215 -3687217 + L1Md_F2 LINE L1 6203 6570 -12 1 2061 2951 230 100 44 chr1 193508215 193508471 -3686961 + MYSERV16_I-int LTR ERVK 1048 1266 -1060 1 2061 625 24 12 0 chr1 193509437 193509519 -3685913 + B1_Mm SINE Alu 65 147 0 2 2061 240 111 0 0 chr1 193509521 193509566 -3685866 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2 2061 267 284 59 25 chr1 193511224 193511343 -3684089 - MERVK26-int LTR ERVK -2074 4845 4723 2 2061 1177 82 6 12 chr1 193512107 193512280 -3683152 + B2_Mm2 SINE B2 2 173 -22 2 2061 1188 49 0 0 chr1 193512302 193512446 -3682986 + B1_Mus1 SINE Alu 1 144 -4 2 2061 4439 185 52 33 chr1 193513249 193514143 -3681289 + MYSERV-int LTR ERVK 5541 6468 -82 2 2061 1987 125 9 51 chr1 193514143 193514479 -3680953 + RLTRETN_Mm LTR ERVK 1 322 0 2 2061 4439 185 52 33 chr1 193514479 193514573 -3680859 + MYSERV-int LTR ERVK 6469 6547 -3 2 2061 881 59 8 0 chr1 193514574 193514693 -3680739 - B1_Mus1 SINE Alu -8 140 21 2 2061 2362 130 86 5 chr1 193514727 193515144 -3680288 + RLTR11B LTR ERVK 1 451 -2 2 2061 447 246 237 59 chr1 193515318 193515613 -3679819 + RLTR41 LTR ERV1 170 499 -33 2 2061 244 349 0 19 chr1 193515792 193515900 -3679532 - RLTR15 LTR ERVK -68 291 186 2 2061 468 259 92 28 chr1 193516020 193516238 -3679194 - RLTR12B LTR ERVK -296 232 1 3 2061 387 229 2 2 chr1 193516310 193516406 -3679026 + L1M4 LINE L1 5520 5615 -2170 3 2061 1763 209 48 40 chr1 193516718 193517217 -3678215 + RLTR20B3 LTR ERVK 21 523 -54 3 2061 882 282 93 34 chr1 193518131 193518626 -3676806 + L1MC4 LINE L1 7411 7934 -108 3 2061 376 227 25 98 chr1 193518670 193518792 -3676640 + MT2B LTR ERVL 152 264 -337 3 2061 961 67 0 0 chr1 193518692 193518827 -3676605 + B1_Mus2 SINE Alu 13 147 0 3 2061 320 259 0 24 chr1 193518963 193519046 -3676386 + ID4_ SINE ID 1 81 -2 3 2061 316 294 121 12 chr1 193519230 193519395 -3676037 - MIR SINE MIR -64 198 16 3 2061 2094 161 50 24 chr1 193519517 193519900 -3675532 + ORR1B1 LTR MaLR 2 394 0 3 2061 790 263 33 5 chr1 193520045 193520255 -3675177 - B3 SINE B2 0 216 1 3 2061 238 259 0 17 chr1 193520561 193520620 -3674812 - MIRc SINE MIR -66 202 145 4 2061 183 186 0 0 chr1 193520636 193520679 -3674753 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 2061 560 198 0 9 chr1 193520711 193520818 -3674614 - B3 SINE B2 -25 191 86 4 2061 281 241 198 26 chr1 193521327 193521519 -3673913 + L1MB8 LINE L1 4255 4479 -1667 4 2061 467 269 37 6 chr1 193521557 193521718 -3673714 + L1MB8 LINE L1 4615 4780 -1366 4 2061 610 175 0 17 chr1 193521851 193521967 -3673465 + B1_Mur2 SINE Alu 35 148 -1 4 2061 777 239 136 3 chr1 193522659 193523014 -3672418 + L1MB8 LINE L1 5057 5464 -720 4 2061 479 266 169 35 chr1 193523022 193523283 -3672149 - ORR1E LTR MaLR 0 359 64 4 2061 1727 257 103 29 chr1 193523437 193524095 -3671337 + L1MB8 LINE L1 5463 6169 -9 4 2061 567 227 8 30 chr1 193524323 193524455 -3670977 - B1F1 SINE Alu -10 139 11 4 2061 413 286 7 60 chr1 193524455 193524472 -3670960 - ID_B1 SINE B4 -10 214 74 4 2061 237 262 131 37 chr1 193524662 193524769 -3670663 - Tigger5 DNA MER2_type -2179 227 111 4 2061 532 191 42 34 chr1 193525095 193525214 -3670218 + PB1D9 SINE Alu 1 120 0 4 2061 237 276 171 43 chr1 193525214 193525235 -3670197 + B4A SINE B4 86 243 -49 5 2061 227 217 0 21 chr1 193525236 193525283 -3670149 + GA-rich Low_complexity Low_complexity 2 47 0 5 2061 233 298 53 11 chr1 193526244 193526339 -3669093 + PB1D10 SINE Alu 5 103 -14 5 2061 444 37 0 0 chr1 193526385 193526439 -3668993 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 5 2061 189 0 0 0 chr1 193526610 193526631 -3668801 + (TTA)n Simple_repeat Simple_repeat 3 23 0 5 2061 773 173 29 7 chr1 193526632 193526772 -3668660 - B1_Mur3 SINE Alu -6 143 1 5 2061 469 162 0 0 chr1 193527064 193527144 -3668288 - B1_Mus2 SINE Alu -65 82 3 5 2061 328 209 21 75 chr1 193527144 193527157 -3668275 - MT2B LTR ERVL -362 239 152 5 2061 1316 193 188 9 chr1 193528384 193528709 -3666723 - MTD LTR MaLR -36 383 1 5 2061 195 266 117 0 chr1 193528768 193528862 -3666570 + L2a LINE L2 3309 3413 -13 5 2061 363 378 38 0 chr1 193529750 193529935 -3665497 - MLT1J LTR MaLR -243 269 78 6 2061 45 90 0 0 chr1 193529991 193530113 -3665319 + AT_rich Low_complexity Low_complexity 1 122 0 6 2061 289 248 35 14 chr1 193530124 193530267 -3665165 + (TATAA)n Simple_repeat Simple_repeat 1 146 0 6 2061 186 167 67 100 chr1 193530973 193531033 -3664399 + MER5B DNA MER1_type 11 68 -110 6 2061 543 183 199 0 chr1 193531439 193531570 -3663862 + B3A SINE B2 1 157 -41 6 2061 189 74 0 0 chr1 193531677 193531704 -3663728 + (TAAG)n Simple_repeat Simple_repeat 1 27 0 6 2061 788 161 41 27 chr1 193531912 193532059 -3663373 - B1_Mur4 SINE Alu -1 149 1 6 2061 1232 34 0 13 chr1 193532110 193532259 -3663173 + B1_Mus1 SINE Alu 2 148 0 6 2061 996 166 5 11 chr1 193532312 193532501 -3662931 + MTC LTR MaLR 196 383 -38 6 2061 245 295 16 0 chr1 193532521 193532582 -3662850 - MER81 DNA AcHobo -22 92 31 6 2061 3426 92 163 0 chr1 193532611 193533113 -3662319 + MT2B2 LTR ERVL 1 584 0 7 2061 290 331 47 16 chr1 193533219 193533289 -3662143 + B1F1 SINE Alu 6 78 -71 7 2061 612 211 0 9 chr1 193533289 193533399 -3662033 + PB1D9 SINE Alu 1 109 -11 7 2061 519 17 0 0 chr1 193533402 193533462 -3661970 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 7 2061 290 331 47 16 chr1 193533462 193533516 -3661916 + B1F1 SINE Alu 79 135 -14 7 2061 204 67 0 0 chr1 193533634 193533664 -3661768 + (T)n Simple_repeat Simple_repeat 1 30 0 7 2061 21 36 0 0 chr1 193534252 193534280 -3661152 + AT_rich Low_complexity Low_complexity 1 28 0 7 2061 351 44 0 0 chr1 193534368 193534413 -3661019 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 2061 912 78 70 0 chr1 193534459 193534588 -3660844 - B1_Mus1 SINE Alu -9 139 2 7 2061 458 283 21 14 chr1 193534633 193534773 -3660659 + B1F1 SINE Alu 4 144 -5 7 2061 686 90 449 0 chr1 193534928 193535084 -3660348 - URR1A DNA MER1_type 0 226 1 7 2061 1107 88 0 7 chr1 193535135 193535283 -3660149 + B1_Mus1 SINE Alu 1 147 -1 8 2061 1420 94 16 0 chr1 193535302 193535494 -3659938 + B2_Mm2 SINE B2 1 195 0 8 2061 849 237 158 16 chr1 193535792 193536045 -3659387 + B4A SINE B4 3 291 -1 8 2061 677 241 45 51 chr1 193536083 193536394 -3659038 - RLTR15 LTR ERVK -18 341 33 8 2061 261 303 100 9 chr1 193536406 193536516 -3658916 + B4 SINE B4 98 217 -75 8 2061 251 203 135 34 chr1 193536466 193536614 -3658818 - RMER17D LTR ERVK -344 545 383 8 2061 293 273 222 20 chr1 193536634 193536798 -3658634 + MIR SINE MIR 1 192 -76 8 2061 215 362 11 11 chr1 193536807 193536902 -3658530 + PB1D10 SINE Alu 2 96 -21 8 2061 366 287 131 7 chr1 193536957 193537094 -3658338 + RSINE1 SINE B4 3 156 -9 8 2061 228 263 0 0 chr1 193538589 193538646 -3656786 + A-rich Low_complexity Low_complexity 1 57 0 8 2061 405 314 63 0 chr1 193539067 193539226 -3656206 + MLT1B LTR MaLR 1 169 -221 9 2061 301 281 114 16 chr1 193539231 193539354 -3656078 + B1F SINE Alu 3 137 -12 9 2061 379 191 189 8 chr1 193539382 193539509 -3655923 + MLT1B LTR MaLR 173 322 -68 9 2061 603 257 7 14 chr1 193539679 193539821 -3655611 - B1_Mur2 SINE Alu -7 142 2 9 2061 467 214 71 0 chr1 193540659 193540771 -3654661 - PB1D7 SINE Alu 0 120 1 9 2061 538 292 0 27 chr1 193540844 193540992 -3654440 + B1F SINE Alu 1 144 -5 9 2061 475 246 0 6 chr1 193541038 193541150 -3654282 - B1F SINE Alu -13 107 2 9 2061 432 0 0 0 chr1 193541400 193541448 -3653984 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 2061 22 0 0 0 chr1 193541794 193541816 -3653616 + GC_rich Low_complexity Low_complexity 1 22 0 9 2061 22 0 0 0 chr1 193541904 193541926 -3653506 + GC_rich Low_complexity Low_complexity 1 22 0 9 2061 204 40 0 0 chr1 193541995 193542020 -3653412 + (CCG)n Simple_repeat Simple_repeat 2 26 0 9 2061 225 269 22 36 chr1 193542093 193542232 -3653200 + G-rich Low_complexity Low_complexity 2 138 0 1 2061 30 59 0 0 chr1 193542325 193542376 -3653056 + GC_rich Low_complexity Low_complexity 1 51 0 1 2061 189 0 0 0 chr1 193542414 193542435 -3652997 + (CCG)n Simple_repeat Simple_repeat 1 21 0 1 2061 186 103 0 0 chr1 193542712 193542741 -3652691 + (TCC)n Simple_repeat Simple_repeat 3 31 0 1 2061 222 37 0 0 chr1 193543084 193543111 -3652321 + (CGAG)n Simple_repeat Simple_repeat 4 30 0 1 2061 26 64 0 0 chr1 193543995 193544042 -3651390 + AT_rich Low_complexity Low_complexity 1 47 0 1 2061 243 0 0 0 chr1 193546425 193546452 -3648980 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1 2061 349 286 11 0 chr1 193546739 193546830 -3648602 - B1F SINE Alu -57 92 1 1 2061 316 262 52 75 chr1 193547369 193547542 -3647890 + MamRep1879 DNA hAT? 2 170 -46 1 2061 192 40 0 0 chr1 193547600 193547625 -3647807 + (CAGAG)n Simple_repeat Simple_repeat 2 26 0 1 2061 214 253 310 0 chr1 193547854 193547941 -3647491 - ID_B1 SINE B4 -18 206 93 1 2061 386 224 24 65 chr1 193548207 193548331 -3647101 - PB1D9 SINE Alu -1 119 1 1 2061 788 185 20 0 chr1 193549298 193549354 -3646078 - B1_Mur2 SINE Alu 0 149 92 1 2061 281 89 22 0 chr1 193549354 193549399 -3646033 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 2061 788 185 20 0 chr1 193549399 193549488 -3645944 - B1_Mur2 SINE Alu -58 91 2 1 2061 314 275 110 60 chr1 193549664 193549994 -3645438 - L1M7 LINE L1 -809 1200 925 1 2061 2921 133 76 22 chr1 193549994 193550495 -3644937 + RLTR12B LTR ERVK 1 528 0 1 2061 511 185 98 0 chr1 193550500 193550592 -3644840 - PB1D9 SINE Alu -19 101 1 1 2061 240 285 89 94 chr1 193550592 193550661 -3644771 - L1M7 LINE L1 -4978 1265 1205 1 2061 618 277 7 7 chr1 193550678 193550816 -3644616 - RSINE1 SINE B4 -25 140 3 1 2061 408 250 138 15 chr1 193550835 193550965 -3644467 - ID_B1 SINE B4 0 224 79 1 2061 260 271 64 90 chr1 193550983 193551373 -3644059 - L1M7 LINE L1 -5123 1120 741 1 2061 180 0 0 0 chr1 193551645 193551665 -3643767 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 2061 831 192 181 0 chr1 193551691 193551873 -3643559 - B3 SINE B2 0 216 2 1 2061 192 152 0 0 chr1 193552260 193552293 -3643139 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 2061 302 45 23 0 chr1 193552548 193552592 -3642840 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 2061 577 171 88 52 chr1 193552594 193552730 -3642702 - B1_Mur4 SINE Alu -9 141 1 1 2061 35 19 0 19 chr1 193552837 193552852 -3642580 + AT_rich Low_complexity Low_complexity 1 15 0 1 2061 1225 35 14 0 chr1 193552852 193552997 -3642435 + B1_Mm SINE Alu 1 147 0 1 2061 35 19 0 19 chr1 193552997 193553034 -3642398 + AT_rich Low_complexity Low_complexity 1 37 0 1 2061 635 37 12 0 chr1 193553052 193553134 -3642298 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 2061 718 32 0 0 chr1 193553134 193553228 -3642204 - B1_Mus2 SINE Alu -8 139 46 1 2061 311 238 0 35 chr1 193553160 193553247 -3642185 - RLTR25A LTR ERVK -516 587 504 1 2061 777 206 35 41 chr1 193553434 193553606 -3641826 - B3 SINE B2 -44 172 2 1 2061 3351 256 179 15 chr1 193553700 193553731 -3641701 - Lx8 LINE L1 -3 7470 7442 1 2061 204 40 0 0 chr1 193553731 193553756 -3641676 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 2061 3351 256 179 15 chr1 193553756 193554874 -3640558 - Lx8 LINE L1 -32 7441 6132 1 2061 181 140 23 23 chr1 193554887 193554931 -3640501 + CT-rich Low_complexity Low_complexity 3 46 0 1 2061 325 191 190 60 chr1 193554951 193555051 -3640381 - PB1D9 SINE Alu -6 114 2 1 2061 385 290 79 14 chr1 193555077 193555217 -3640215 - B1F SINE Alu 0 149 1 1 2061 891 234 48 5 chr1 193555317 193555523 -3639909 + B3 SINE B2 1 215 -1 1 2061 373 274 165 38 chr1 193555546 193555679 -3639753 + RSINE1 SINE B4 3 152 -13 1 2061 288 300 17 106 chr1 193555871 193556050 -3639382 + B4A SINE B4 128 290 -2 1 2061 318 284 0 0 chr1 193556238 193556312 -3639120 + PB1D10 SINE Alu 36 109 -8 1 2061 2614 261 59 18 chr1 193556346 193556394 -3639038 - L1MB7 LINE L1 -19 6165 6113 1 2061 1378 145 216 10 chr1 193556394 193556700 -3638732 + ORR1D1 LTR MaLR 3 371 -3 1 2061 2614 261 59 18 chr1 193556700 193557197 -3638235 - L1MB7 LINE L1 -72 6112 5607 1 2061 195 42 0 0 chr1 193557197 193557221 -3638211 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 2061 1153 58 0 0 chr1 193557221 193557360 -3638072 - B1_Mus1 SINE Alu -9 139 1 1 2061 2614 261 59 18 chr1 193557360 193557647 -3637785 - L1MB7 LINE L1 -578 5606 5298 1 2061 877 66 231 50 chr1 193558093 193558253 -3637179 + B2_Mm1t SINE B2 1 189 -4 1 2061 661 174 99 0 chr1 193558277 193558398 -3637034 + B1_Mur2 SINE Alu 4 136 -13 1 2061 225 0 0 0 chr1 193558399 193558424 -3637008 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 2061 428 223 98 0 chr1 193558483 193558595 -3636837 - L1MB7 LINE L1 -1065 5081 4959 1 2061 261 0 0 0 chr1 193558628 193558657 -3636775 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 2061 601 329 51 26 chr1 193558663 193558897 -3636535 - B4A SINE B4 -18 274 35 1 2061 426 267 115 16 chr1 193558917 193559100 -3636332 - L1MB7 LINE L1 -1214 4932 4732 1 2061 362 290 43 116 chr1 193559140 193559159 -3636273 - B4 SINE B4 -74 218 203 1 2061 1403 144 281 3 chr1 193559159 193559458 -3635974 - RLTR14 LTR ERV1 0 382 1 1 2061 721 183 15 44 chr1 193559458 193559575 -3635857 - B1_Mur2 SINE Alu -23 126 9 1 2061 362 290 43 116 chr1 193559575 193559602 -3635830 - B4 SINE B4 -90 202 67 1 2061 309 150 0 18 chr1 193559602 193559668 -3635764 - B1_Mur2 SINE Alu -1 149 89 1 2061 228 262 0 0 chr1 193559682 193559724 -3635708 + B1F1 SINE Alu 11 52 -97 1 2061 884 140 14 14 chr1 193559838 193559976 -3635456 + B1_Mus1 SINE Alu 2 139 -9 1 2061 441 0 0 0 chr1 193559984 193560033 -3635399 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 2061 252 0 0 0 chr1 193560312 193560340 -3635092 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 2061 366 277 51 43 chr1 193560475 193560592 -3634840 - RSINE1 SINE B4 -44 121 4 1 2061 1927 149 75 24 chr1 193560630 193561002 -3634430 + ORR1B1 LTR MaLR 1 391 -3 1 2061 543 101 0 0 chr1 193561049 193561128 -3634304 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 1 2061 305 24 24 0 chr1 193561179 193561221 -3634211 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 2061 21 0 0 0 chr1 193561311 193561332 -3634100 + AT_rich Low_complexity Low_complexity 1 21 0 1 2061 739 55 266 0 chr1 193561455 193561564 -3633868 + B1_Mus2 SINE Alu 1 138 -9 1 2061 188 0 74 0 chr1 193561564 193561591 -3633841 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 2061 948 212 31 48 chr1 193562393 193562621 -3632811 - URR1B DNA MER1_type 0 225 2 1 2061 279 133 0 0 chr1 193563007 193563052 -3632380 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1 2061 769 214 90 25 chr1 193563594 193563795 -3631637 + B3 SINE B2 2 215 -1 1 2061 25 0 0 0 chr1 193563828 193563853 -3631579 + GC_rich Low_complexity Low_complexity 1 25 0 1 2061 699 12 0 0 chr1 193563858 193563938 -3631494 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 2061 189 0 0 0 chr1 193563938 193563958 -3631474 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 2061 213 39 0 0 chr1 193564133 193564159 -3631273 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 2061 291 157 0 0 chr1 193564175 193564226 -3631206 + A-rich Low_complexity Low_complexity 1 51 0 1 2061 302 257 85 42 chr1 193564895 193565013 -3630419 - ID_B1 SINE B4 -16 208 86 1 2061 268 230 0 13 chr1 193565345 193565420 -3630012 - PB1D10 SINE Alu 0 117 44 1 2061 743 214 77 44 chr1 193565527 193565708 -3629724 - B3 SINE B2 -27 189 3 1 2061 2006 168 99 5 chr1 193565866 193566238 -3629194 - MTB_Mm LTR MaLR 0 407 1 1 2061 633 225 81 6 chr1 193566364 193566525 -3628907 + MTC LTR MaLR 1 173 -248 1 2061 504 248 0 9 chr1 193566533 193566643 -3628789 + B3 SINE B2 1 109 -107 1 2061 414 103 25 13 chr1 193566659 193566738 -3628694 + (GAA)n Simple_repeat Simple_repeat 3 82 0 1 2061 484 229 194 0 chr1 193566738 193566908 -3628524 + MTC LTR MaLR 196 398 -21 1 2061 1839 113 27 14 chr1 193567091 193567387 -3628045 - Lx2 LINE L1 0 6997 6698 1 2061 1020 179 122 4 chr1 193567466 193567713 -3627719 - ORR1C1 LTR MaLR 0 378 103 1 2061 588 200 26 9 chr1 193567739 193567855 -3627577 + PB1D9 SINE Alu 3 120 0 1 2061 329 221 191 62 chr1 193567861 193568008 -3627424 - MLT1B LTR MaLR -62 443 252 1 2061 536 53 13 0 chr1 193568018 193568094 -3627338 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 2061 723 256 66 30 chr1 193568129 193568326 -3627106 + B3 SINE B2 2 205 -11 1 2061 238 219 0 99 chr1 193568339 193568410 -3627022 - MLT1B LTR MaLR -299 168 105 1 2061 481 266 60 190 chr1 193568478 193568594 -3626838 + B4A SINE B4 1 84 -208 1 2061 859 93 17 0 chr1 193568594 193568712 -3626720 + PB1D9 SINE Alu 1 120 0 1 2061 481 266 60 190 chr1 193568712 193568911 -3626521 + B4A SINE B4 85 275 -17 1 2061 712 269 5 70 chr1 193569587 193569787 -3625645 - B3 SINE B2 -15 201 15 1 2061 350 208 83 0 chr1 193569851 193569923 -3625509 + RSINE1 SINE B4 76 153 -12 1 2061 364 193 22 11 chr1 193569967 193570056 -3625376 - L1MB2 LINE L1 -57 6114 6025 1 2061 667 291 54 5 chr1 193570101 193570325 -3625107 + MER2 DNA MER2_type 111 345 0 1 2061 310 149 0 0 chr1 193570352 193570399 -3625033 - L1MB2 LINE L1 -184 5990 5944 1 2061 330 271 74 9 chr1 193570432 193570540 -3624892 - L1MC LINE L1 -2172 5710 5596 1 2061 869 174 65 12 chr1 193570567 193570754 -3624678 - ORR1C2 LTR MaLR -2 382 140 1 2061 282 239 11 32 chr1 193570758 193570853 -3624579 + GA-rich Low_complexity Low_complexity 2 94 0 1 2061 314 123 17 17 chr1 193570857 193570915 -3624517 - ORR1C2 LTR MaLR -324 60 3 1 2061 689 303 42 42 chr1 193570973 193571217 -3624215 + B4A SINE B4 9 257 -35 1 2061 210 37 0 0 chr1 193571217 193571244 -3624188 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 2061 689 303 42 42 chr1 193571244 193571282 -3624150 + B4A SINE B4 258 291 -1 1 2061 459 0 0 0 chr1 193571282 193571333 -3624099 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 2061 1069 265 142 29 chr1 193572398 193572744 -3622688 - MER21B LTR ERV1 -85 778 394 1 2061 33 73 0 0 chr1 193573167 193573235 -3622197 + AT_rich Low_complexity Low_complexity 1 68 0 1 2061 21 82 0 0 chr1 193573743 193573792 -3621640 + AT_rich Low_complexity Low_complexity 1 49 0 1 2061 967 122 134 0 chr1 193573802 193573966 -3621466 + B2_Mm1t SINE B2 2 187 -6 2 2061 881 167 7 0 chr1 193574144 193574288 -3621144 + B1_Mur2 SINE Alu 5 149 0 2 2061 396 0 0 0 chr1 193574316 193574360 -3621072 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 2061 924 199 5 62 chr1 193575163 193575372 -3620060 - B3A SINE B2 0 198 2 2 2061 440 270 16 50 chr1 193575627 193575748 -3619684 + RSINE1 SINE B4 3 119 -46 2 2061 432 0 0 0 chr1 193575750 193575798 -3619634 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 2061 499 246 49 0 chr1 193575846 193575968 -3619464 - B4A SINE B4 -128 164 37 2 2061 2138 143 37 26 chr1 193575968 193576348 -3619084 - ORR1C2 LTR MaLR 0 384 1 2 2061 2429 134 51 15 chr1 193576353 193576746 -3618686 + MTB_Mm LTR MaLR 1 407 0 2 2061 282 56 0 0 chr1 193576780 193576816 -3618616 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 2061 28 0 0 0 chr1 193577147 193577175 -3618257 + AT_rich Low_complexity Low_complexity 1 28 0 2 2061 24 53 0 0 chr1 193577325 193577363 -3618069 + AT_rich Low_complexity Low_complexity 1 38 0 2 2061 411 98 0 0 chr1 193577903 193577964 -3617468 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 2061 468 123 0 0 chr1 193578063 193578136 -3617296 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 2061 660 188 7 36 chr1 193578163 193578301 -3617131 + B1_Mus1 SINE Alu 1 134 -14 2 2061 2332 128 88 15 chr1 193578377 193578840 -3616592 - RMER6A LTR ERVK 0 756 260 2 2061 1320 122 132 16 chr1 193578840 193579097 -3616335 + ORR1A4 LTR MaLR 1 287 -42 2 2061 1258 41 0 0 chr1 193579099 193579246 -3616186 + B1_Mus2 SINE Alu 1 147 0 2 2061 1186 61 0 0 chr1 193579273 193579420 -3616012 + B1_Mm SINE Alu 1 147 0 2 2061 400 55 0 0 chr1 193579437 193579492 -3615940 + ORR1A4 LTR MaLR 340 394 0 2 2061 1691 111 4 0 chr1 193579493 193579755 -3615677 - RMER6A LTR ERVK -493 263 1 2 2061 183 291 62 25 chr1 193580161 193580242 -3615190 + MIR SINE MIR 142 225 -37 2 2061 477 300 62 0 chr1 193581163 193581293 -3614139 + ID_B1 SINE B4 85 222 -2 2 2061 875 146 13 40 chr1 193581324 193581474 -3613958 - B1_Mm SINE Alu -1 146 1 2 2061 493 309 56 1 chr1 193581967 193582127 -3613305 + B3A SINE B2 4 170 -46 2 2061 472 236 45 18 chr1 193583212 193583324 -3612108 - B1_Mur2 SINE Alu 0 149 35 2 2061 186 71 0 0 chr1 193584188 193584216 -3611216 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 2061 556 224 44 22 chr1 193584241 193584378 -3611054 - B1_Mur2 SINE Alu -9 140 1 2 2061 412 254 7 91 chr1 193584740 193584798 -3610634 + B1F SINE Alu 4 58 -91 2 2061 246 32 0 0 chr1 193584798 193584829 -3610603 + (GGGTG)n Simple_repeat Simple_repeat 3 33 0 2 2061 412 254 7 91 chr1 193584829 193584913 -3610519 + B1F SINE Alu 59 134 -15 2 2061 709 109 30 0 chr1 193586081 193586182 -3609250 - U6 snRNA snRNA -3 104 1 2 2061 839 18 9 9 chr1 193587886 193587998 -3607434 - B1_Mus1 SINE Alu -1 147 36 2 2061 636 119 0 0 chr1 193588096 193588205 -3607227 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 2061 539 188 21 0 chr1 193588247 193588343 -3607089 - B3A SINE B2 -100 98 1 2 2061 680 171 26 73 chr1 193588923 193588940 -3606492 - B1_Mm SINE Alu -2 145 135 2 2061 189 0 0 0 chr1 193588940 193588961 -3606471 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2 2061 680 171 26 73 chr1 193588961 193589094 -3606338 - B1_Mm SINE Alu -13 134 2 2 2061 216 0 0 0 chr1 193589323 193589347 -3606085 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 2061 267 216 0 0 chr1 193589456 193589507 -3605925 - PB1D9 SINE Alu -68 52 2 2 2061 524 208 86 23 chr1 193589989 193590117 -3605315 + B1_Mur2 SINE Alu 2 137 -12 2 2061 180 0 0 0 chr1 193590119 193590139 -3605293 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2 2061 737 195 16 0 chr1 193590268 193590396 -3605036 + B3 SINE B2 1 130 -86 2 2061 23 33 0 0 chr1 193590418 193590448 -3604984 + AT_rich Low_complexity Low_complexity 1 30 0 2 2061 31 26 0 0 chr1 193590686 193590724 -3604708 + AT_rich Low_complexity Low_complexity 1 38 0 2 2061 222 37 0 0 chr1 193590736 193590763 -3604669 + (T)n Simple_repeat Simple_repeat 1 27 0 2 2061 1213 54 0 0 chr1 193590763 193590910 -3604522 - B1_Mm SINE Alu 0 147 1 2 2061 207 0 0 0 chr1 193590933 193590956 -3604476 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 2061 221 170 0 36 chr1 193591166 193591221 -3604211 + G-rich Low_complexity Low_complexity 2 54 0 2 2061 247 225 24 59 chr1 193591443 193591528 -3603904 + B3 SINE B2 135 216 0 2 2061 372 338 41 33 chr1 193591862 193592104 -3603328 + B4A SINE B4 4 247 -45 2 2061 340 246 180 39 chr1 193592129 193592307 -3603125 + L2a LINE L2 2549 2751 -668 2 2061 887 183 179 42 chr1 193592312 193592636 -3602796 + ORR1C2 LTR MaLR 1 393 -1 2 2061 194 148 91 18 chr1 193592844 193592899 -3602533 + L2a LINE L2 3073 3131 -295 2 2061 233 194 65 0 chr1 193593037 193593099 -3602333 + Kanga1c DNA Tc2 1 66 -663 2 2062 246 123 17 34 chr1 193593595 193593654 -3601778 + GA-rich Low_complexity Low_complexity 3 60 0 2 2062 293 386 35 17 chr1 193593748 193593864 -3601568 + RSINE1 SINE B4 48 165 0 2 2062 634 167 37 0 chr1 193594073 193594181 -3601251 + B1_Mur4 SINE Alu 1 112 -38 2 2062 193 0 94 0 chr1 193594195 193594227 -3601205 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 2062 539 269 71 27 chr1 193594230 193594491 -3600941 - MLT2B1 LTR ERVL -10 544 261 2 2062 476 193 95 17 chr1 193594687 193594803 -3600629 - B1_Mur1 SINE Alu -17 132 8 2 2062 718 214 0 0 chr1 193594874 193595014 -3600418 - B1_Mur1 SINE Alu -8 141 2 2 2062 235 327 99 76 chr1 193595051 193595355 -3600077 - Lx8 LINE L1 -1 7472 7162 2 2062 234 280 53 0 chr1 193595468 193595543 -3599889 + B4A SINE B4 89 167 -125 2 2062 515 214 6 40 chr1 193595484 193595617 -3599815 + PB1D10 SINE Alu 21 140 -9 2 2062 349 244 58 80 chr1 193595630 193595768 -3599664 - B3 SINE B2 -6 210 76 2 2062 408 125 0 0 chr1 193596540 193596604 -3598828 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 2062 643 81 9 66 chr1 193596606 193596712 -3598720 - U6 snRNA snRNA -7 100 1 2 2062 1118 268 11 115 chr1 193597614 193598066 -3597366 - MTD LTR MaLR -14 405 1 2 2062 278 235 15 0 chr1 193599071 193599139 -3596293 - L1MEb LINE L1 -5939 131 63 2 2062 554 279 0 20 chr1 193599500 193599650 -3595782 - B1F SINE Alu -2 147 1 2 2062 258 295 25 13 chr1 193599696 193599775 -3595657 + ID4 SINE ID 2 81 -2 2 2062 565 240 98 54 chr1 193599786 193599989 -3595443 + B3 SINE B2 5 216 0 2 2062 538 223 36 107 chr1 193600425 193600621 -3594811 - B3A SINE B2 -16 182 1 2 2062 333 240 40 0 chr1 193601213 193601288 -3594144 + ID4 SINE ID 3 80 -3 2 2062 22 35 0 0 chr1 193606249 193606278 -3589154 + AT_rich Low_complexity Low_complexity 1 29 0 2 2062 640 218 8 0 chr1 193608331 193608455 -3586977 - B3 SINE B2 -64 152 28 2 2062 529 205 131 0 chr1 193608489 193608611 -3586821 - B1_Mus2 SINE Alu -9 138 1 2 2062 21 0 0 0 chr1 193609327 193609348 -3586084 + GC_rich Low_complexity Low_complexity 1 21 0 2 2062 201 74 0 0 chr1 193611393 193611420 -3584012 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 2 2062 692 224 38 56 chr1 193611683 193611888 -3583544 + Lx7 LINE L1 7130 7331 -365 2 2062 204 40 0 0 chr1 193611888 193611913 -3583519 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 2062 346 211 78 17 chr1 193611934 193612050 -3583382 + Lx7 LINE L1 7559 7681 -15 2 2062 387 41 0 0 chr1 193612061 193612110 -3583322 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2 2062 321 247 26 13 chr1 193612682 193612760 -3582672 - B1F SINE Alu -3 146 68 2 2062 6445 69 38 87 chr1 193613288 193614322 -3581110 - RLTR13C1 LTR ERVK 0 983 1 2 2062 905 241 10 25 chr1 193615830 193616034 -3579398 + ID_B1 SINE B4 3 203 -21 2 2062 411 56 0 0 chr1 193616038 193616092 -3579340 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 2062 667 290 49 18 chr1 193616108 193616333 -3579099 + MTD LTR MaLR 4 235 -184 2 2062 468 204 48 10 chr1 193616421 193616525 -3578907 + MTD LTR MaLR 269 376 -45 2 2062 414 0 0 0 chr1 193617959 193618005 -3577427 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 2062 198 395 27 18 chr1 193618356 193618467 -3576965 - L2c LINE L2 -2 3385 3274 2 2062 226 236 0 35 chr1 193618707 193618764 -3576668 + MLT1D LTR MaLR 448 502 -3 2 2062 409 275 13 0 chr1 193618916 193619021 -3576411 + ID_B1 SINE B4 70 173 -51 2 2062 529 248 18 5 chr1 193618938 193619066 -3576366 + PB1D10 SINE Alu 10 147 -2 2 2062 421 270 9 0 chr1 193619091 193619206 -3576226 + B1F1 SINE Alu 2 117 -32 2 2062 343 303 62 26 chr1 193619206 193619392 -3576040 + L1MD1 LINE L1 4979 5170 -976 2 2062 2108 205 74 24 chr1 193619397 193619857 -3575575 - RMER19B LTR ERVK -7 895 413 2 2062 1296 222 68 30 chr1 193619980 193620392 -3575040 + MT2A LTR ERVL 6 558 -43 2 2062 381 321 158 8 chr1 193620519 193620760 -3574672 + L1MD1 LINE L1 5609 5885 -357 2 2062 234 333 0 0 chr1 193620934 193621015 -3574417 + L1MA10 LINE L1 6233 6313 -21 2 2062 193 29 59 0 chr1 193621015 193621049 -3574383 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 2062 1777 171 62 77 chr1 193621436 193621853 -3573579 - MTD LTR MaLR -8 411 1 2 2062 590 161 20 59 chr1 193621853 193621905 -3573527 - MTD-int LTR MaLR 0 1258 1208 2 2062 4586 136 111 15 chr1 193621905 193622726 -3572706 - RMER19B LTR ERVK 0 902 3 2 2062 590 161 20 59 chr1 193622726 193622825 -3572607 - MTD-int LTR MaLR -51 1207 1113 2 2062 631 214 37 30 chr1 193622829 193622964 -3572468 + RMER1B Other Other 256 391 -675 2 2062 803 262 65 33 chr1 193622951 193623073 -3572359 + RMER1C Other Other 1070 1188 -154 2 2062 2278 77 111 3 chr1 193623073 193623425 -3572007 - RLTR10 LTR ERVK 0 390 1 2 2062 803 262 65 33 chr1 193623425 193623547 -3571885 + RMER1C Other Other 1189 1322 -20 2 2062 1938 213 126 45 chr1 193623554 193624187 -3571245 - MTD-int LTR MaLR -428 1535 492 2 2062 269 222 15 45 chr1 193624593 193624659 -3570773 - ID_B1 SINE B4 -3 221 158 2 2062 265 289 112 10 chr1 193624595 193624693 -3570739 - B1F2 SINE Alu -5 144 37 2 2062 444 301 79 4 chr1 193624689 193624873 -3570559 - ID_B1 SINE B4 -81 211 8 2 2062 393 168 92 2 chr1 193625039 193625120 -3570312 + PB1D10 SINE Alu 18 106 -14 3 2062 326 22 43 0 chr1 193625121 193625167 -3570265 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 3 2062 261 0 0 0 chr1 193625218 193625247 -3570185 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 2062 4349 47 29 14 chr1 193625390 193625968 -3569464 - LTRIS_Mus LTR ERV1 0 587 1 3 2062 397 276 96 6 chr1 193626030 193626187 -3569245 + MER2 DNA MER2_type 170 340 -5 3 2062 189 0 0 0 chr1 193626619 193626640 -3568792 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 3 2062 2939 47 47 3 chr1 193628164 193628547 -3566885 - MTB LTR MaLR 0 400 1 3 2062 266 352 12 19 chr1 193629031 193629089 -3566343 + polypurine Low_complexity Low_complexity 1 58 0 3 2062 752 224 0 0 chr1 193629089 193629236 -3566196 + B1_Mus2 SINE Alu 1 147 0 3 2062 266 352 12 19 chr1 193629236 193629339 -3566093 + GA-rich Low_complexity Low_complexity 59 161 0 3 2062 376 288 189 27 chr1 193629526 193629625 -3565807 - MLT1C LTR MaLR -90 377 266 3 2062 1341 240 43 19 chr1 193629625 193629994 -3565438 + MTEa LTR MaLR 2 379 0 3 2062 376 288 189 27 chr1 193629994 193630190 -3565242 - MLT1C LTR MaLR -202 265 36 3 2062 207 98 96 19 chr1 193630669 193630721 -3564711 + (CATTT)n Simple_repeat Simple_repeat 5 60 0 3 2062 620 202 122 27 chr1 193630731 193630919 -3564513 - B3 SINE B2 -6 210 5 3 2062 535 232 150 38 chr1 193630947 193631172 -3564260 - ID_B1 SINE B4 -41 251 14 3 2062 291 54 0 0 chr1 193631916 193631953 -3563479 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 2062 279 173 0 0 chr1 193632187 193632239 -3563193 + CT-rich Low_complexity Low_complexity 3 54 0 3 2062 864 135 13 13 chr1 193632335 193632485 -3562947 - B1_Mur4 SINE Alu 0 150 1 3 2062 590 247 103 33 chr1 193633296 193633480 -3561952 - B3A SINE B2 0 198 2 3 2062 21 36 0 0 chr1 193633582 193633610 -3561822 + AT_rich Low_complexity Low_complexity 1 28 0 3 2062 547 196 28 0 chr1 193633626 193633733 -3561699 - B3 SINE B2 -106 110 1 3 2062 389 200 35 0 chr1 193633828 193633913 -3561519 + PB1D10 SINE Alu 30 117 0 3 2062 4193 158 78 67 chr1 193633955 193634832 -3560600 + RMER19B LTR ERVK 1 887 -15 3 2062 1247 91 11 16 chr1 193634832 193635021 -3560411 + B2_Mm1a SINE B2 1 188 -5 3 2062 1186 48 0 0 chr1 193635029 193635175 -3560257 + B1_Mus1 SINE Alu 1 146 -2 3 2062 305 256 13 0 chr1 193636220 193636298 -3559134 - ID4 SINE ID 0 83 5 3 2062 219 272 181 17 chr1 193637113 193637229 -3558203 - RSINE1 SINE B4 -16 149 15 3 2062 325 245 17 109 chr1 193637555 193637674 -3557758 + PB1D10 SINE Alu 1 108 -9 3 2062 1005 9 0 0 chr1 193637840 193637954 -3557478 + (TTC)n Simple_repeat Simple_repeat 2 115 0 3 2062 1128 62 0 7 chr1 193637970 193638117 -3557315 - B1_Mus2 SINE Alu -1 146 1 3 2062 343 190 0 0 chr1 193638434 193638492 -3556940 + B3 SINE B2 36 93 -123 3 2062 350 85 17 0 chr1 193638511 193638570 -3556862 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 2062 781 122 99 0 chr1 193638586 193638717 -3556715 - B1_Mur2 SINE Alu 0 149 6 3 2062 192 281 15 15 chr1 193638807 193638872 -3556560 - MIR3 SINE MIR -11 197 133 3 2062 238 300 125 0 chr1 193638999 193639079 -3556353 - MLT1A1 LTR MaLR -12 396 307 3 2062 185 77 18 71 chr1 193639242 193639298 -3556134 + G-rich Low_complexity Low_complexity 1 53 0 3 2062 800 222 7 1 chr1 193639426 193639589 -3555843 + B3A SINE B2 1 163 -53 3 2062 324 0 0 0 chr1 193639589 193639625 -3555807 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 2062 688 282 23 28 chr1 193639625 193639676 -3555756 + B3 SINE B2 164 214 -2 3 2062 1183 48 0 0 chr1 193639810 193639957 -3555475 + B1_Mus2 SINE Alu 1 147 0 3 2062 180 0 0 0 chr1 193640811 193640831 -3554601 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 3 2062 487 102 204 0 chr1 193640894 193640982 -3554450 - B2_Mm2 SINE B2 -88 107 2 3 2062 261 0 0 0 chr1 193640991 193641020 -3554412 + (T)n Simple_repeat Simple_repeat 1 29 0 3 2062 959 293 158 25 chr1 193641020 193641622 -3553810 - Lx9 LINE L1 0 7644 6963 3 2062 323 258 0 0 chr1 193642265 193642331 -3553101 - BC1_Mm scRNA scRNA -82 70 5 3 2062 632 112 0 10 chr1 193642895 193642986 -3552446 + B1_Mus2 SINE Alu 46 136 -11 3 2062 183 42 0 0 chr1 193642986 193643010 -3552422 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 2062 739 280 20 25 chr1 193643011 193643117 -3552315 - MTE2b LTR MaLR -125 254 153 3 2062 1722 171 16 52 chr1 193643117 193643500 -3551932 + ORR1D1 LTR MaLR 3 371 -3 3 2062 739 280 20 25 chr1 193643500 193643591 -3551841 - MTE2b LTR MaLR -227 152 58 3 2062 291 238 106 12 chr1 193643591 193643676 -3551756 - MTE2b LTR MaLR -281 98 6 3 2062 412 112 35 57 chr1 193643868 193644105 -3551327 + (CA)n Simple_repeat Simple_repeat 1 231 0 3 2062 210 37 0 0 chr1 193644806 193644833 -3550599 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 2062 272 241 0 0 chr1 193644864 193644922 -3550510 - PB1D9 SINE Alu -11 109 52 3 2062 406 198 31 0 chr1 193645852 193645948 -3549484 - MTEa LTR MaLR -218 161 63 3 2062 235 253 91 11 chr1 193645873 193645961 -3549471 - MT2A LTR ERVL -393 140 46 3 2062 912 142 0 20 chr1 193646632 193646783 -3548649 - B1_Mur3 SINE Alu 0 149 2 3 2062 444 270 28 101 chr1 193646966 193647194 -3548238 - B3A SINE B2 0 216 12 3 2062 793 247 71 6 chr1 193647281 193647464 -3547968 - B3 SINE B2 -11 205 11 3 2062 361 231 143 0 chr1 193647482 193647573 -3547859 - PB1D9 SINE Alu -16 104 1 3 2062 1168 61 0 0 chr1 193647679 193647827 -3547605 - B1_Mus1 SINE Alu 0 148 1 3 2062 682 266 97 9 chr1 193647944 193648172 -3547260 - MTE2b LTR MaLR -131 248 1 3 2062 244 163 23 0 chr1 193648437 193648480 -3546952 + B1F SINE Alu 106 149 0 3 2062 234 0 0 0 chr1 193648527 193648553 -3546879 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 2062 481 256 81 140 chr1 193648883 193648957 -3546475 - ID_B1 SINE B4 -14 210 148 3 2062 679 231 80 0 chr1 193648957 193649156 -3546276 - B3 SINE B2 0 216 2 3 2062 481 256 81 140 chr1 193649156 193649303 -3546129 - ID_B1 SINE B4 -77 147 2 3 2062 184 59 59 0 chr1 193650058 193650092 -3545340 + (TTTTC)n Simple_repeat Simple_repeat 5 40 0 3 2062 219 150 254 48 chr1 193651357 193651420 -3544012 - ID4_ SINE ID 0 83 8 3 2062 323 206 147 27 chr1 193651523 193651598 -3543834 + URR1B DNA MER1_type 1 84 -141 3 2062 313 304 89 59 chr1 193651868 193652172 -3543260 + Charlie6 DNA MER1_type 1749 2061 -1439 3 2062 1302 161 113 14 chr1 193652477 193652761 -3542671 - RMER19B LTR ERVK 0 902 591 3 2062 790 152 48 0 chr1 193652997 193653142 -3542290 + URR1B DNA MER1_type 74 225 0 3 2062 1834 172 97 18 chr1 193653630 193654056 -3541376 + ORR1B1 LTR MaLR 1 386 -8 3 2062 281 267 198 0 chr1 193654157 193654243 -3541189 + B1F1 SINE Alu 4 106 -43 3 2062 221 192 0 119 chr1 193654269 193654309 -3541123 + B3 SINE B2 3 42 -174 3 2062 1265 154 287 0 chr1 193654309 193654602 -3540830 - ORR1C1 LTR MaLR 0 378 2 3 2062 221 192 0 119 chr1 193654602 193654620 -3540812 + B3 SINE B2 43 54 -162 3 2062 288 0 0 0 chr1 193654833 193654865 -3540567 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 2062 686 298 13 96 chr1 193656981 193657194 -3538238 - B4 SINE B4 -5 287 96 3 2062 1343 44 44 0 chr1 193657194 193657376 -3538056 - B2_Mm1t SINE B2 -3 190 1 3 2062 686 298 13 96 chr1 193657376 193657474 -3537958 - B4 SINE B4 -197 95 2 3 2062 668 142 16 16 chr1 193657641 193657763 -3537669 - B1_Mus2 SINE Alu -1 146 25 3 2062 355 227 134 0 chr1 193657832 193657929 -3537503 - MER45B DNA Tip100 -155 885 776 3 2062 288 130 0 0 chr1 193658037 193658083 -3537349 + (CGTG)n Simple_repeat Simple_repeat 1 46 0 3 2062 187 219 0 47 chr1 193658400 193658443 -3536989 - L2c LINE L2 0 3387 3347 3 2062 714 176 56 19 chr1 193659145 193659307 -3536125 - RMER5 LTR ERV1 -18 516 349 3 2062 403 195 84 8 chr1 193659400 193659519 -3535913 - RMER5 LTR ERV1 -367 167 40 3 2062 446 195 47 169 chr1 193659602 193659750 -3535682 + B1F SINE Alu 20 149 0 3 2062 1218 20 0 0 chr1 193659795 193659941 -3535491 + B1_Mus2 SINE Alu 2 147 0 3 2062 180 0 0 0 chr1 193659972 193659992 -3535440 + (A)n Simple_repeat Simple_repeat 1 20 0 3 2062 278 265 71 10 chr1 193661095 193661194 -3534238 - MER5A1 DNA MER1_type -31 135 31 3 2062 285 271 0 0 chr1 193662165 193662235 -3533197 + ID4 SINE ID 8 77 -6 3 2062 850 99 0 60 chr1 193662290 193662440 -3532992 - B1_Mur3 SINE Alu 0 149 9 3 2062 1319 18 23 6 chr1 193662462 193662634 -3532798 + B2_Mm2 SINE B2 1 175 -20 3 2062 203 194 0 0 chr1 193662636 193662672 -3532760 + (TAA)n Simple_repeat Simple_repeat 3 38 0 3 2062 251 256 36 88 chr1 193662709 193662846 -3532586 - LTR59 LTR ERV1 -270 327 198 3 2062 648 218 0 0 chr1 193664348 193664527 -3530905 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 2062 468 244 88 37 chr1 193665773 193665909 -3529523 + ID_B1 SINE B4 6 148 -76 3 2062 248 191 39 59 chr1 193665851 193665933 -3529499 + FLAM_A SINE Alu 9 86 -34 3 2062 1483 193 115 14 chr1 193666486 193666851 -3528581 - MTD LTR MaLR -14 405 13 3 2062 264 59 0 0 chr1 193666851 193666885 -3528547 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 3 2062 748 225 29 68 chr1 193667030 193667235 -3528197 + B3A SINE B2 1 197 -1 3 2062 227 202 13 0 chr1 193667744 193667823 -3527609 + (TATG)n Simple_repeat Simple_repeat 2 81 0 3 2062 288 0 0 0 chr1 193667873 193667905 -3527527 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 2062 670 140 65 0 chr1 193668329 193668436 -3526996 - B1_Mur2 SINE Alu -8 141 28 3 2062 289 241 11 75 chr1 193668356 193668450 -3526982 - MT2B LTR ERVL -337 264 177 3 2062 583 232 32 0 chr1 193668511 193668636 -3526796 - RSINE1 SINE B4 -35 130 2 3 2062 957 101 14 7 chr1 193668932 193669072 -3526360 - B1_Mur4 SINE Alu 0 150 10 4 2062 217 118 39 0 chr1 193669288 193669339 -3526093 + T-rich Low_complexity Low_complexity 2 54 0 4 2062 2830 71 128 2 chr1 193669365 193669763 -3525669 - L1_Mus3 LINE L1 0 6638 6191 4 2062 405 0 0 0 chr1 193669766 193669811 -3525621 + (CATAT)n Simple_repeat Simple_repeat 2 46 0 4 2062 776 102 51 0 chr1 193670059 193670177 -3525255 + B1_Mur2 SINE Alu 24 147 -2 4 2062 526 273 12 12 chr1 193670298 193670461 -3524971 - L1MA4 LINE L1 -412 5888 5726 4 2062 306 266 0 0 chr1 193670554 193670618 -3524814 - ID_B1 SINE B4 -54 170 107 4 2062 586 295 27 27 chr1 193670881 193671031 -3524401 + RSINE1 SINE B4 10 159 -6 4 2062 227 246 29 15 chr1 193671053 193671189 -3524243 + (CATA)n Simple_repeat Simple_repeat 4 141 0 4 2062 465 229 5 27 chr1 193671215 193671399 -3524033 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 2062 341 207 71 24 chr1 193671908 193671992 -3523440 + PB1D9 SINE Alu 25 112 -8 4 2062 279 0 0 0 chr1 193671998 193672029 -3523403 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 2062 4372 155 88 62 chr1 193672097 193672965 -3522467 + RMER19B LTR ERVK 1 890 -12 4 2062 335 259 47 0 chr1 193672960 193673045 -3522387 + ID_B1 SINE B4 134 222 -2 4 2062 511 111 0 0 chr1 193673754 193673826 -3521606 + B2_Mm2 SINE B2 6 77 -118 4 2062 437 243 418 102 chr1 193673826 193673969 -3521463 + B4 SINE B4 6 288 -4 4 2062 233 284 12 24 chr1 193673969 193674052 -3521380 + GA-rich Low_complexity Low_complexity 3 84 0 4 2062 285 265 111 10 chr1 193674054 193674153 -3521279 + MIRc SINE MIR 40 148 -120 4 2062 1214 68 0 0 chr1 193674401 193674548 -3520884 + B1_Mus2 SINE Alu 1 147 0 4 2062 258 247 44 56 chr1 193674603 193674693 -3520739 + RSINE1 SINE B4 12 100 -65 4 2062 209 262 48 32 chr1 193674839 193674902 -3520530 - MIR SINE MIR -171 91 28 4 2062 452 330 71 64 chr1 193676249 193676531 -3518901 - RMER13A LTR ERVK 0 860 577 4 2062 207 0 0 0 chr1 193677043 193677066 -3518366 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 2062 4647 163 37 38 chr1 193677207 193678075 -3517357 - RMER19B LTR ERVK -14 888 48 4 2062 838 194 19 59 chr1 193678091 193678316 -3517116 - RMER19B LTR ERVK -740 162 1 4 2062 273 57 0 0 chr1 193678881 193678916 -3516516 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 2062 917 180 235 0 chr1 193679804 193680021 -3515411 + MTD LTR MaLR 1 268 -151 4 2062 676 299 35 10 chr1 193680154 193680353 -3515079 + ID_B1 SINE B4 1 204 -20 4 2062 203 339 0 0 chr1 193680372 193680431 -3515001 + GA-rich Low_complexity Low_complexity 3 61 0 4 2062 750 153 0 0 chr1 193680434 193680545 -3514887 + B1_Mur4 SINE Alu 3 113 -37 4 2062 373 252 40 112 chr1 193680545 193680586 -3514846 + MT2B LTR ERVL 167 307 -294 4 2062 247 237 0 51 chr1 193680605 193680761 -3514671 + (CCCTAA)n Simple_repeat Simple_repeat 1 148 0 4 2062 251 288 64 55 chr1 193680866 193680976 -3514456 - MLT1A1 LTR MaLR -297 111 1 4 2062 184 407 55 9 chr1 193681511 193681620 -3513812 - L2b LINE L2 -8 3367 3254 4 2062 871 244 30 15 chr1 193681634 193681834 -3513598 + B3 SINE B2 1 203 -13 4 2062 300 241 0 0 chr1 193681839 193681918 -3513514 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 2062 3626 136 112 21 chr1 193682138 193682797 -3512635 + RMER6D LTR ERVK 1 719 -1 4 2062 238 338 46 81 chr1 193682802 193682976 -3512456 - MIRb SINE MIR -35 233 66 4 2062 376 298 24 0 chr1 193683167 193683251 -3512181 - B1_Mur3 SINE Alu -63 86 1 4 2062 305 274 159 87 chr1 193683252 193683360 -3512072 - B4 SINE B4 -67 225 96 4 2062 1801 140 143 21 chr1 193683360 193683695 -3511737 + ORR1C2 LTR MaLR 5 380 -4 4 2062 305 274 159 87 chr1 193683695 193683715 -3511717 - B4 SINE B4 -197 95 85 4 2062 441 0 0 0 chr1 193683715 193683764 -3511668 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 2062 305 274 159 87 chr1 193683764 193683842 -3511590 - B4 SINE B4 -208 84 4 4 2062 321 338 43 57 chr1 193683971 193684112 -3511320 + MER5A DNA MER1_type 16 154 -35 4 2062 655 314 63 0 chr1 193684910 193685101 -3510331 - MIR SINE MIR -40 222 20 4 2062 263 113 19 0 chr1 193685514 193685567 -3509865 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 2062 642 204 80 7 chr1 193685595 193685733 -3509699 - B1_Mur1 SINE Alu 0 149 2 4 2062 752 249 38 138 chr1 193686112 193686373 -3509059 - MTE2a LTR MaLR -135 244 10 4 2062 180 0 0 0 chr1 193686414 193686434 -3508998 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 4 2062 438 262 85 31 chr1 193686434 193686564 -3508868 - RSINE1 SINE B4 -4 161 25 4 2062 255 79 0 0 chr1 193686669 193686707 -3508725 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 4 2062 465 234 18 9 chr1 193687148 193687260 -3508172 + Tigger7 DNA MER2_type 1 113 -2378 4 2062 464 298 96 0 chr1 193687278 193687456 -3507976 + Tigger7 DNA MER2_type 2297 2491 0 4 2062 184 298 0 50 chr1 193688711 193688771 -3506661 + MIR SINE MIR 44 100 -162 4 2062 402 115 0 0 chr1 193689285 193689346 -3506086 + (CAA)n Simple_repeat Simple_repeat 2 62 0 4 2062 1438 194 150 6 chr1 193689834 193690160 -3505272 - ORR1D1 LTR MaLR -1 373 1 4 2062 241 238 48 29 chr1 193690362 193690466 -3504966 - L1MA7 LINE L1 -51 6240 6135 4 2062 714 167 55 55 chr1 193690677 193690823 -3504609 - B1_Mm SINE Alu -1 146 1 4 2062 1047 284 48 11 chr1 193691366 193691719 -3503713 - Lx7 LINE L1 -513 7183 6818 4 2062 412 360 7 7 chr1 193691917 193692068 -3503364 + MIRb SINE MIR 24 174 -94 4 2062 276 316 53 0 chr1 193692660 193692736 -3502696 - MER3 DNA MER1_type -127 82 3 4 2062 260 286 98 10 chr1 193692954 193693076 -3502356 - MIRm SINE MIR -53 155 19 4 2062 375 217 0 38 chr1 193693196 193693354 -3502078 + (CA)n Simple_repeat Simple_repeat 1 152 0 4 2062 1124 189 19 52 chr1 193693385 193693464 -3501968 + B3 SINE B2 1 79 -137 4 2062 2696 151 86 6 chr1 193693464 193693952 -3501480 - RLTR11A2 LTR ERVK 0 527 1 4 2062 1124 189 19 52 chr1 193693952 193694045 -3501387 + B3 SINE B2 80 175 -41 4 2062 3553 18 5 0 chr1 193694045 193694439 -3500993 - MTA_Mm LTR MaLR 0 396 1 4 2062 9812 16 0 0 chr1 193694439 193695537 -3499895 - MTA_Mm-int LTR MaLR 0 1098 1 4 2062 3553 18 5 0 chr1 193695537 193695931 -3499501 - MTA_Mm LTR MaLR 0 396 1 4 2062 1124 189 19 52 chr1 193695931 193695967 -3499465 + B3 SINE B2 176 200 -16 4 2062 582 54 0 0 chr1 193697144 193697218 -3498214 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 2062 2587 104 3 27 chr1 193697227 193697601 -3497831 - RLTR8 LTR ERVK 0 365 1 4 2062 984 122 7 26 chr1 193697677 193697828 -3497604 - B1_Mur4 SINE Alu -1 149 2 4 2062 660 240 64 13 chr1 193697873 193698029 -3497403 - RSINE1 SINE B4 0 165 2 4 2062 599 191 43 9 chr1 193698029 193698145 -3497287 - B4 SINE B4 -66 226 107 4 2062 192 244 0 0 chr1 193698859 193698900 -3496532 + MIRc SINE MIR 107 147 -121 4 2062 382 274 74 63 chr1 193698969 193699144 -3496288 + MIRb SINE MIR 78 254 -8 4 2062 1470 204 136 12 chr1 193699170 193699502 -3495930 + MTD LTR MaLR 29 401 -18 4 2062 634 217 9 0 chr1 193699984 193700090 -3495342 - URR1A DNA MER1_type -119 107 1 4 2062 573 190 0 0 chr1 193700585 193700764 -3494668 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 2062 683 167 0 11 chr1 193700813 193700995 -3494437 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 2062 636 150 0 32 chr1 193701015 193701201 -3494231 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 2062 595 305 50 59 chr1 193701203 193701405 -3494027 - B4 SINE B4 0 292 93 4 2062 229 387 9 9 chr1 193701439 193701551 -3493881 - B4 SINE B4 -179 113 2 4 2062 212 280 0 0 chr1 193702810 193702860 -3492572 + MIR SINE MIR 20 69 -193 4 2062 301 250 95 0 chr1 193703488 193703572 -3491860 - MTEa LTR MaLR 0 379 288 4 2062 1199 61 0 0 chr1 193703667 193703814 -3491618 - B1_Mm SINE Alu 0 147 1 4 2062 281 294 77 53 chr1 193704365 193704534 -3490898 - MLT1L LTR MaLR -6 604 432 4 2062 884 147 14 7 chr1 193704727 193704871 -3490561 - B1_Mur3 SINE Alu 0 149 5 4 2062 180 256 0 0 chr1 193705515 193705554 -3489878 - L2 LINE L2 -839 2580 2542 4 2062 402 170 11 45 chr1 193705787 193705966 -3489466 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 4 2062 291 318 57 0 chr1 193706853 193706941 -3488491 + MamRep1879 DNA hAT? 78 170 -46 4 2062 289 317 0 0 chr1 193707275 193707335 -3488097 + RSINE1 SINE B4 6 65 -100 4 2062 204 337 0 11 chr1 193707358 193707451 -3487981 + A-rich Low_complexity Low_complexity 4 95 0 4 2062 236 231 0 37 chr1 193707396 193707450 -3487982 + polypurine Low_complexity Low_complexity 4 55 0 4 2062 681 302 34 15 chr1 193707488 193707693 -3487739 + ID_B1 SINE B4 1 209 -15 4 2062 338 261 132 16 chr1 193708028 193708149 -3487283 + RCHARR1 DNA MER1_type 803 937 -37 4 2062 261 230 12 29 chr1 193708468 193708638 -3486794 + (TG)n Simple_repeat Simple_repeat 1 167 0 4 2062 279 285 325 0 chr1 193708644 193708761 -3486671 - RSINE1 SINE B4 -5 160 6 4 2062 487 234 9 0 chr1 193708775 193708886 -3486546 - B1_Mur3 SINE Alu -7 142 31 4 2062 573 222 118 0 chr1 193710126 193710261 -3485171 - B3 SINE B2 -4 212 62 4 2062 859 159 11 0 chr1 193710303 193710577 -3484855 + (CA)n Simple_repeat Simple_repeat 1 277 0 4 2062 1266 145 159 12 chr1 193710598 193710849 -3484583 + MTC LTR MaLR 120 407 -14 4 2062 280 279 81 0 chr1 193710863 193710949 -3484483 + LTR16A LTR ERVL 351 443 -8 4 2062 296 254 0 53 chr1 193711127 193711202 -3484230 + B1_Mur1 SINE Alu 70 140 -9 4 2062 405 0 0 0 chr1 193711202 193711247 -3484185 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 2062 1048 213 23 14 chr1 193711260 193711474 -3483958 + B3 SINE B2 1 216 0 4 2062 217 174 21 21 chr1 193711646 193711693 -3483739 + C-rich Low_complexity Low_complexity 2 48 0 4 2062 324 263 101 40 chr1 193712380 193712479 -3482953 + B3A SINE B2 80 184 -32 4 2062 912 124 0 0 chr1 193712486 193712753 -3482679 + (CA)n Simple_repeat Simple_repeat 1 267 0 5 2062 432 161 0 0 chr1 193712757 193712838 -3482594 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 5 2062 1018 126 17 0 chr1 193712842 193713017 -3482415 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 2062 204 40 0 0 chr1 193713017 193713042 -3482390 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 5 2062 493 284 24 0 chr1 193713052 193713170 -3482262 + B1F SINE Alu 20 140 -9 5 2062 306 0 0 0 chr1 193713170 193713204 -3482228 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 2062 1078 274 98 0 chr1 193714775 193715041 -3480391 + B4A SINE B4 1 292 0 5 2062 189 107 0 0 chr1 193715053 193715081 -3480351 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 2062 437 151 163 0 chr1 193715463 193715549 -3479883 + PB1D9 SINE Alu 5 104 -16 5 2062 446 233 37 37 chr1 193717250 193717357 -3478075 + PB1D10 SINE Alu 11 117 0 5 2062 290 286 43 11 chr1 193717369 193717459 -3477973 + ID4_ SINE ID 8 102 -50 5 2062 301 409 25 37 chr1 193719366 193719610 -3475822 + L1MC4 LINE L1 7233 7473 -569 5 2062 238 307 40 0 chr1 193719649 193719724 -3475708 - ID4 SINE ID -3 80 3 5 2062 289 262 43 104 chr1 193719724 193719839 -3475593 - B1F SINE Alu -2 147 40 5 2062 939 97 0 0 chr1 193720109 193720254 -3475178 + (TG)n Simple_repeat Simple_repeat 2 146 0 5 2062 528 291 14 28 chr1 193720324 193720469 -3474963 + B1F2 SINE Alu 6 148 -1 5 2062 682 283 189 41 chr1 193720624 193720941 -3474491 + MTEb LTR MaLR 1 364 -15 5 2062 413 290 107 0 chr1 193720996 193721127 -3474305 - Tigger5 DNA MER2_type -2261 145 1 5 2062 459 139 116 0 chr1 193721385 193721471 -3473961 - B1_Mus1 SINE Alu -17 131 36 5 2062 255 224 29 15 chr1 193721904 193721962 -3473470 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 5 2062 645 164 17 25 chr1 193721962 193722081 -3473351 - PB1D9 SINE Alu -2 118 1 5 2062 255 224 29 15 chr1 193722081 193722090 -3473342 + (TTCA)n Simple_repeat Simple_repeat 3 11 0 5 2062 957 136 57 47 chr1 193722153 193722346 -3473086 + B2_Mm2 SINE B2 1 195 0 5 2062 1623 141 81 55 chr1 193723156 193723501 -3471931 + ORR1B1 LTR MaLR 41 394 0 5 2062 305 255 10 48 chr1 193723657 193723680 -3471752 - B3A SINE B2 -99 99 1 5 2062 403 215 0 12 chr1 193723680 193723760 -3471672 - RSINE1 SINE B4 -85 80 2 5 2062 288 243 164 27 chr1 193724032 193724142 -3471290 + PB1 SINE Alu 1 125 -2 5 2062 344 317 10 0 chr1 193724200 193724301 -3471131 + MER5A1 DNA MER1_type 58 159 -7 5 2063 180 77 0 0 chr1 193724904 193724930 -3470502 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 2063 547 241 41 28 chr1 193724930 193725075 -3470357 - ID_B1 SINE B4 -11 213 67 5 2063 193 267 65 22 chr1 193725231 193725323 -3470109 - L2b LINE L2 -244 3131 3036 5 2063 632 215 14 20 chr1 193725446 193725593 -3469839 - B1_Mur3 SINE Alu -1 148 3 5 2063 278 254 0 0 chr1 193726140 193726203 -3469229 + ID4 SINE ID 12 74 -9 5 2063 463 264 253 0 chr1 193726304 193726478 -3468954 - ID_B1 SINE B4 0 224 7 5 2063 378 230 0 0 chr1 193726636 193726710 -3468722 + PB1D10 SINE Alu 1 74 -43 5 2063 1059 75 7 7 chr1 193726711 193726858 -3468574 + B1_Mm SINE Alu 1 147 0 5 2063 212 125 0 40 chr1 193726860 193726910 -3468522 + A-rich Low_complexity Low_complexity 2 49 0 5 2063 496 282 8 0 chr1 193727014 193727131 -3468301 + RSINE1 SINE B4 12 129 -36 5 2063 266 256 61 0 chr1 193727268 193727350 -3468082 - ID_B1 SINE B4 -21 203 117 5 2063 292 271 82 10 chr1 193727280 193727377 -3468055 - B1F SINE Alu -36 113 10 5 2063 368 224 176 9 chr1 193728007 193728115 -3467317 - RSINE1 SINE B4 -36 129 4 5 2063 527 175 181 8 chr1 193728127 193728254 -3467178 - B1_Mur2 SINE Alu 0 149 1 5 2063 824 106 309 45 chr1 193728686 193728864 -3466568 + URR1B DNA MER1_type 1 225 0 5 2063 712 147 42 7 chr1 193729323 193729467 -3465965 + B1_Mur4 SINE Alu 2 150 0 5 2063 362 264 49 8 chr1 193729806 193729928 -3465504 - MIR3 SINE MIR -1 207 81 5 2063 26 0 0 0 chr1 193730103 193730129 -3465303 + GC_rich Low_complexity Low_complexity 1 26 0 5 2063 321 214 6 65 chr1 193730304 193730474 -3464958 + C-rich Low_complexity Low_complexity 5 164 0 5 2063 36 40 0 0 chr1 193731373 193731423 -3464009 + GC_rich Low_complexity Low_complexity 1 50 0 5 2063 536 185 77 0 chr1 193732114 193732244 -3463188 - B1_Mur4 SINE Alu 0 150 11 5 2063 186 71 0 0 chr1 193735844 193735872 -3459560 + (TTGGGG)n Simple_repeat Simple_repeat 1 28 0 5 2063 271 262 30 40 chr1 193737285 193737414 -3458018 - B1_Mus2 SINE Alu 0 127 1 5 2063 257 261 0 0 chr1 193737363 193737428 -3458004 - B4 SINE B4 -156 136 72 5 2063 546 208 164 14 chr1 193737769 193737915 -3457517 - B3 SINE B2 -22 194 27 5 2063 672 110 4 21 chr1 193737935 193738063 -3457369 - B1_Mus1 SINE Alu 0 120 1 5 2063 432 263 134 6 chr1 193738070 193738242 -3457190 - B3A SINE B2 -4 194 1 5 2063 1097 68 7 0 chr1 193739359 193739506 -3455926 - B1_Mus1 SINE Alu 0 148 1 5 2063 302 256 35 0 chr1 193740224 193740310 -3455122 - ID_B1 SINE B4 -134 90 2 5 2063 775 70 0 17 chr1 193740437 193740553 -3454879 + B1_Mm SINE Alu 34 147 0 5 2063 895 215 111 83 chr1 193741225 193741621 -3453811 + RMER17C LTR ERVK 2 408 -2 5 2063 279 79 0 0 chr1 193741875 193741913 -3453519 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 2063 361 238 0 16 chr1 193743106 193743230 -3452202 + C-rich Low_complexity Low_complexity 2 123 0 5 2063 216 0 0 0 chr1 193744030 193744054 -3451378 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 2063 230 116 23 0 chr1 193744385 193744428 -3451004 + (GGA)n Simple_repeat Simple_repeat 2 45 0 5 2063 1001 96 0 0 chr1 193744560 193744695 -3450737 + B1_Mus1 SINE Alu 3 137 -11 5 2063 198 0 0 0 chr1 193744695 193744717 -3450715 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 2063 438 253 23 99 chr1 193745373 193745451 -3449981 - RLTR20A1 LTR ERVK 0 578 500 5 2063 1139 75 0 0 chr1 193745451 193745598 -3449834 - B1_Mus1 SINE Alu 0 148 2 5 2063 438 253 23 99 chr1 193745598 193745628 -3449804 - RLTR20A1 LTR ERVK -79 499 479 5 2063 321 26 0 0 chr1 193745628 193745666 -3449766 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 2063 438 253 23 99 chr1 193745666 193745727 -3449705 - RLTR20A1 LTR ERVK -100 478 421 5 2063 260 163 0 0 chr1 193745722 193745765 -3449667 - RLTR20A1 LTR ERVK -294 274 232 5 2063 459 151 170 11 chr1 193745762 193745856 -3449576 - RLTR20A1 LTR ERVK -442 109 1 5 2063 3675 21 0 14 chr1 193746320 193746761 -3448671 + MERVL-int LTR ERVL 1764 2198 -3287 5 2063 2093 170 56 88 chr1 193747751 193747913 -3447519 + RLTR11A LTR ERVK 11 159 -369 5 2063 1235 110 16 0 chr1 193747913 193748104 -3447328 + B2_Mm2 SINE B2 1 194 -1 5 2063 2093 170 56 88 chr1 193748104 193748476 -3446956 + RLTR11A LTR ERVK 160 528 0 5 2063 495 289 72 0 chr1 193748673 193748825 -3446607 + RSINE1 SINE B4 3 165 0 5 2063 944 134 0 32 chr1 193748835 193748989 -3446443 - B1_Mur4 SINE Alu -1 149 1 5 2063 203 49 45 68 chr1 193749000 193749044 -3446388 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 2063 333 0 0 0 chr1 193749779 193749816 -3445616 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 2063 294 260 0 0 chr1 193750002 193750102 -3445330 + (TATG)n Simple_repeat Simple_repeat 3 102 0 5 2063 372 268 7 70 chr1 193750110 193750235 -3445197 - B3A SINE B2 -11 205 81 5 2063 224 284 12 0 chr1 193752702 193752783 -3442649 - L2 LINE L2 -2361 1058 977 5 2063 828 247 77 57 chr1 193752822 193753158 -3442274 + MTE2a LTR MaLR 30 421 0 5 2063 519 366 80 19 chr1 193753783 193754045 -3441387 - MLT1G LTR MaLR -85 506 229 5 2063 216 0 0 0 chr1 193754398 193754422 -3441010 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 5 2063 288 0 0 0 chr1 193754434 193754466 -3440966 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 2063 534 31 0 0 chr1 193755198 193755262 -3440170 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 5 2063 288 0 0 0 chr1 193755262 193755294 -3440138 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 2063 219 114 0 0 chr1 193756151 193756186 -3439246 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 5 2063 276 303 143 52 chr1 193756644 193756895 -3438537 - L2c LINE L2 -2 3385 3112 5 2063 5412 46 65 0 chr1 193757491 193758188 -3437244 + RLTR4_Mm LTR ERV1 1 742 0 5 2063 66171 12 2 0 chr1 193758188 193765775 -3429657 + RLTR4_MM-int LTR ERV1 1 7601 0 5 2063 5412 46 65 0 chr1 193765775 193766472 -3428960 + RLTR4_Mm LTR ERV1 1 742 0 5 2063 1089 68 0 7 chr1 193766802 193766950 -3428482 + B1_Mm SINE Alu 1 147 0 5 2063 685 120 25 25 chr1 193767529 193767649 -3427783 + PB1D9 SINE Alu 1 120 0 5 2063 28 0 0 0 chr1 193768450 193768478 -3426954 + AT_rich Low_complexity Low_complexity 1 28 0 5 2063 1076 68 0 20 chr1 193768478 193768628 -3426804 - B1_Mus1 SINE Alu 0 148 2 5 2063 248 290 47 24 chr1 193770610 193770737 -3424695 - MER53 DNA hAT -15 178 49 5 2063 251 140 20 0 chr1 193771168 193771218 -3424214 + CT-rich Low_complexity Low_complexity 1 51 0 5 2063 991 100 0 0 chr1 193771218 193771358 -3424074 - B1_Mus1 SINE Alu -8 140 1 5 2063 1409 57 0 40 chr1 193772118 193772319 -3423113 + B2_Mm2 SINE B2 1 193 -2 5 2063 534 276 65 10 chr1 193772627 193772828 -3422604 + B4A SINE B4 1 212 -80 5 2063 1813 138 88 21 chr1 193772828 193773146 -3422286 - RMER17C LTR ERVK 0 410 66 5 2063 3974 38 0 0 chr1 193773146 193773621 -3421811 - MT2C_Mm LTR ERVL 0 475 1 5 2063 1813 138 88 21 chr1 193773621 193773686 -3421746 - RMER17C LTR ERVK -345 65 1 5 2063 360 192 151 0 chr1 193773687 193773760 -3421672 + B4A SINE B4 209 292 0 5 2063 1158 117 0 0 chr1 193773841 193774020 -3421412 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 2063 180 301 22 67 chr1 193774869 193774958 -3420474 - MIRb SINE MIR -69 199 115 5 2063 519 17 0 0 chr1 193775018 193775078 -3420354 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 2063 252 0 0 0 chr1 193775078 193775105 -3420327 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 2063 458 47 31 0 chr1 193775175 193775239 -3420193 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 6 2063 1361 56 0 6 chr1 193775239 193775419 -3420013 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 2063 1043 66 7 0 chr1 193775419 193775555 -3419877 - B1_Mus1 SINE Alu -10 138 2 6 2063 991 118 66 22 chr1 193775556 193775738 -3419694 - B2_Mm2 SINE B2 -3 192 3 6 2063 1190 224 169 3 chr1 193775750 193776063 -3419369 - MTD LTR MaLR -14 405 41 6 2063 264 244 50 128 chr1 193775943 193776084 -3419348 - MT2A LTR ERVL -403 130 1 6 2063 582 104 104 0 chr1 193776389 193776485 -3418947 - B1_Mus2 SINE Alu -40 107 2 6 2063 911 136 14 0 chr1 193776493 193776640 -3418792 - B1_Mur3 SINE Alu 0 149 1 6 2063 2304 80 35 0 chr1 193777816 193778127 -3417305 + ORR1A2 LTR MaLR 1 322 -5 6 2063 290 236 172 6 chr1 193778470 193778604 -3416828 + MIRb SINE MIR 35 184 -84 6 2063 330 242 58 39 chr1 193781432 193781535 -3413897 + B1F1 SINE Alu 1 105 -44 6 2063 1258 34 0 26 chr1 193781598 193781749 -3413683 + B1_Mus1 SINE Alu 2 148 0 6 2063 687 62 73 0 chr1 193781788 193781884 -3413548 + BC1_Mm scRNA scRNA 4 106 -46 6 2063 237 319 35 21 chr1 193782179 193782319 -3413113 - MIR3 SINE MIR -46 230 83 6 2063 372 43 0 0 chr1 193782626 193782672 -3412760 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 2063 682 228 47 0 chr1 193782682 193782831 -3412601 - RSINE1 SINE B4 -8 157 2 6 2063 468 0 0 0 chr1 193782957 193783009 -3412423 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 2063 393 246 0 0 chr1 193783066 193783184 -3412248 + (TG)n Simple_repeat Simple_repeat 1 118 0 6 2063 461 210 141 16 chr1 193784403 193784524 -3410908 - B1_Mur1 SINE Alu -5 144 9 6 2063 353 248 101 47 chr1 193784524 193784545 -3410887 - B4A SINE B4 -63 201 74 6 2063 270 0 0 0 chr1 193784641 193784671 -3410761 + (T)n Simple_repeat Simple_repeat 1 30 0 6 2063 245 235 0 0 chr1 193785327 193785378 -3410054 + CT-rich Low_complexity Low_complexity 3 53 0 6 2063 514 166 33 0 chr1 193785821 193785972 -3409460 + (CA)n Simple_repeat Simple_repeat 2 157 0 6 2063 449 142 35 0 chr1 193786081 193786194 -3409238 + (CA)n Simple_repeat Simple_repeat 1 117 0 6 2063 317 242 24 0 chr1 193786258 193786423 -3409009 + (CA)n Simple_repeat Simple_repeat 2 170 0 6 2063 463 229 104 137 chr1 193786427 193786581 -3408851 + ORR1E LTR MaLR 49 196 -188 6 2063 184 240 20 20 chr1 193786792 193786843 -3408589 + L3 LINE CR1 2639 2689 -1800 6 2063 206 205 0 0 chr1 193787927 193787966 -3407466 + C-rich Low_complexity Low_complexity 1 39 0 6 2063 214 200 35 52 chr1 193788160 193788218 -3407214 + CT-rich Low_complexity Low_complexity 4 60 0 6 2063 2423 31 0 3 chr1 193789439 193789734 -3405698 - L1Md_F2 LINE L1 -335 6249 5956 6 2063 2892 58 0 11 chr1 193789734 193790101 -3405331 + L1Md_F2 LINE L1 6220 6582 0 6 2063 438 20 0 0 chr1 193790891 193790942 -3404490 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 2063 462 316 108 67 chr1 193791056 193791315 -3404117 + L1MCa LINE L1 1421 1693 -4815 6 2063 1136 49 14 40 chr1 193791315 193791463 -3403969 + B1_Mus1 SINE Alu 5 148 0 6 2063 462 316 108 67 chr1 193791463 193791518 -3403914 + L1MCa LINE L1 1694 1748 -4760 6 2063 841 153 12 48 chr1 193791887 193792054 -3403378 + B2_Mm2 SINE B2 1 184 -9 6 2063 1240 48 0 7 chr1 193792201 193792349 -3403083 - B1_Mus2 SINE Alu 0 147 1 6 2063 349 278 99 7 chr1 193792407 193792559 -3402873 + L1MCa LINE L1 1958 2123 -4385 6 2063 413 291 9 26 chr1 193792623 193792736 -3402696 + B3A SINE B2 1 111 -87 6 2063 338 247 85 11 chr1 193792738 193792832 -3402600 + RSINE1 SINE B4 44 144 -21 6 2063 3010 43 69 5 chr1 193792846 193793222 -3402210 - MTB LTR MaLR 0 400 1 6 2063 354 311 94 41 chr1 193793225 193793270 -3402162 + L1MCa LINE L1 3830 3876 -2445 6 2063 1368 99 21 0 chr1 193793270 193793461 -3401971 + B2_Mm2 SINE B2 1 195 0 6 2063 354 315 92 39 chr1 193793461 193793778 -3401654 + L1MCa LINE L1 3873 4209 -2112 6 2063 878 233 24 29 chr1 193794040 193794248 -3401184 - B3 SINE B2 -1 215 9 6 2063 22 0 0 0 chr1 193794282 193794304 -3401128 + AT_rich Low_complexity Low_complexity 1 22 0 6 2063 222 333 54 84 chr1 193795138 193795188 -3400244 + MIR SINE MIR 30 75 -187 6 2063 2828 149 34 32 chr1 193795188 193795714 -3399718 - RLTR11A2 LTR ERVK 0 527 1 6 2063 222 333 54 84 chr1 193795714 193795830 -3399602 + MIR SINE MIR 76 191 -71 6 2063 1679 16 0 16 chr1 193795855 193796047 -3399385 - B2_Mm1t SINE B2 -4 189 1 6 2063 1058 137 152 5 chr1 193796233 193796424 -3399008 + URR1A DNA MER1_type 8 226 0 6 2063 873 118 37 0 chr1 193798066 193798201 -3397231 - URR1B DNA MER1_type 0 225 86 6 2063 365 234 67 54 chr1 193798067 193798216 -3397216 + CYRA11_Mm Unknown Y-chromosome 172 322 -295 6 2063 2520 77 9 0 chr1 193799949 193800273 -3395159 + ORR1A2 LTR MaLR 1 327 0 6 2063 343 341 23 0 chr1 193802210 193802339 -3393093 + (TCCA)n Simple_repeat Simple_repeat 2 133 0 6 2063 272 277 6 0 chr1 193802345 193802511 -3392921 + (CCCA)n Simple_repeat Simple_repeat 2 168 0 6 2063 507 330 137 14 chr1 193803436 193803795 -3391637 - Charlie4a DNA MER1_type -1 507 105 6 2063 955 160 188 0 chr1 193803806 193803987 -3391445 - B3 SINE B2 0 216 2 6 2063 555 56 0 0 chr1 193805189 193805260 -3390172 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 2063 523 309 75 30 chr1 193805913 193806247 -3389185 - L1M2 LINE L1 -819 5324 4976 6 2063 290 157 55 22 chr1 193806655 193806746 -3388686 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 2063 212 167 0 0 chr1 193807765 193807801 -3387631 + CT-rich Low_complexity Low_complexity 2 37 0 6 2063 558 128 0 0 chr1 193807802 193807880 -3387552 - B1F SINE Alu -31 118 41 6 2063 252 148 118 35 chr1 193808933 193809044 -3386388 - MIRc SINE MIR -86 182 66 6 2063 330 276 143 55 chr1 193810613 193810867 -3384565 - RLTR9E LTR ERVK 0 437 140 6 2063 209 139 28 0 chr1 193811709 193811745 -3383687 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 6 2063 808 187 0 22 chr1 193811747 193811884 -3383548 + B1_Mus1 SINE Alu 12 145 -3 6 2063 331 286 0 140 chr1 193811884 193811916 -3383516 + MT2B2 LTR ERVL 175 319 -265 6 2063 183 129 0 0 chr1 193813289 193813320 -3382112 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 2063 1144 22 0 7 chr1 193813322 193813462 -3381970 - B1_Mus1 SINE Alu 0 148 10 6 2063 2682 112 48 5 chr1 193815323 193815719 -3379713 - MTC LTR MaLR -8 413 1 6 2063 210 301 67 50 chr1 193815727 193815846 -3379586 - L2c LINE L2 -12 3375 3255 6 2063 288 0 0 0 chr1 193817807 193817839 -3377593 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 6 2063 1559 151 193 30 chr1 193817970 193818072 -3377360 - RMER1A Other Other -10 1020 874 6 2063 351 0 0 0 chr1 193818072 193818111 -3377321 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 2063 462 26 78 0 chr1 193818112 193818189 -3377243 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 6 2063 1559 158 196 25 chr1 193818189 193818662 -3376770 - RMER1A Other Other -157 873 345 6 2063 437 64 12 37 chr1 193819078 193819159 -3376273 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 2063 270 239 98 43 chr1 193819162 193819254 -3376178 - RMER12 LTR ERVK -486 836 740 6 2063 1068 209 24 5 chr1 193819485 193819692 -3375740 - B3 SINE B2 -5 211 1 6 2063 761 236 106 6 chr1 193819713 193819892 -3375540 - B3A SINE B2 0 198 2 6 2063 1573 142 0 0 chr1 193820110 193820335 -3375097 - URR1B DNA MER1_type 0 225 1 6 2063 258 302 0 11 chr1 193822109 193822196 -3373236 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 2063 568 290 124 15 chr1 193822198 193822457 -3372975 - B4A SINE B4 -5 287 1 6 2063 1426 65 0 16 chr1 193822491 193822680 -3372752 + B2_Mm2 SINE B2 1 186 -9 6 2063 405 102 0 0 chr1 193822716 193822775 -3372657 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 6 2063 760 267 16 154 chr1 193822881 193823310 -3372122 + ORR1D2 LTR MaLR 1 370 0 6 2063 366 23 0 0 chr1 193823631 193823674 -3371758 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 2063 218 287 45 22 chr1 193824342 193824431 -3371001 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 6 2063 1178 188 5 24 chr1 193825040 193825253 -3370179 - B3 SINE B2 -6 210 2 6 2063 1404 84 16 16 chr1 193825267 193825461 -3369971 - B2_Mm2 SINE B2 -1 194 1 6 2063 421 228 14 186 chr1 193825461 193825601 -3369831 - B3 SINE B2 -11 205 80 6 2064 231 297 182 25 chr1 193876205 193876326 -3319106 + L2a LINE L2 3284 3423 -3 6 2064 571 261 73 11 chr1 193877053 193877231 -3318201 + B3A SINE B2 4 192 -6 6 2064 265 207 39 104 chr1 193878647 193878807 -3316625 - B3 SINE B2 0 216 49 6 2064 256 243 33 116 chr1 193879037 193879158 -3316274 - Lx8 LINE L1 -363 7110 7000 6 2064 10854 72 16 6 chr1 193879227 193880742 -3314690 - MusHAL1 LINE L1 -626 2086 557 6 2064 565 258 79 30 chr1 193882400 193882564 -3312868 - ID_B1 SINE B4 -52 172 1 6 2064 703 269 90 15 chr1 193882581 193882781 -3312651 - ID_B1 SINE B4 -3 221 7 6 2064 384 619 0 12 chr1 193883447 193883609 -3311823 + polypurine Low_complexity Low_complexity 2 161 0 6 2064 627 213 63 49 chr1 193884068 193884211 -3311221 + B1_Mur1 SINE Alu 4 148 -1 6 2064 616 273 30 0 chr1 193884262 193884394 -3311038 - RSINE1 SINE B4 -27 138 3 6 2064 354 45 0 0 chr1 193884486 193884530 -3310902 + (TTAA)n Simple_repeat Simple_repeat 1 44 0 6 2064 730 255 42 12 chr1 193884546 193884713 -3310719 - B3 SINE B2 -42 174 3 6 2064 398 189 38 9 chr1 193885188 193885405 -3310027 + (TG)n Simple_repeat Simple_repeat 1 223 0 6 2064 567 173 23 11 chr1 193885432 193885607 -3309825 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 2064 214 273 42 83 chr1 193885856 193885952 -3309480 - B1F2 SINE Alu -5 144 53 6 2064 867 137 21 7 chr1 193886116 193886256 -3309176 - B1_Mur4 SINE Alu -8 142 1 7 2064 370 274 32 57 chr1 193887087 193887211 -3308221 - Cheshire DNA MER1_type -2198 222 102 7 2064 824 233 93 0 chr1 193887194 193887387 -3308045 - B3 SINE B2 -5 211 1 7 2064 580 260 167 0 chr1 193887496 193887646 -3307786 + MTD LTR MaLR 82 256 -163 7 2064 1415 262 116 54 chr1 193887720 193888083 -3307349 + MTD-int LTR MaLR 673 1053 -205 7 2064 991 115 7 26 chr1 193888083 193888235 -3307197 - B1_Mur4 SINE Alu -1 149 1 7 2064 1415 262 116 54 chr1 193888235 193888423 -3307009 + MTD-int LTR MaLR 1054 1257 -1 7 2064 1531 217 87 11 chr1 193888463 193888841 -3306591 + MTD LTR MaLR 12 418 -1 7 2064 421 285 36 109 chr1 193888841 193889034 -3306398 + L1MD LINE L1 5117 5295 -851 7 2064 1049 182 6 0 chr1 193889072 193889237 -3306195 + B3A SINE B2 1 166 -32 7 2064 243 0 0 0 chr1 193889243 193889270 -3306162 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 2064 282 29 0 0 chr1 193889287 193889322 -3306110 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 2064 290 328 114 5 chr1 193889423 193889616 -3305816 + L1M3 LINE L1 5448 5661 -519 7 2064 821 261 35 39 chr1 193889825 193890028 -3305404 - B3 SINE B2 -14 202 1 7 2064 1130 259 83 18 chr1 193890043 193890483 -3304949 + L1MB7 LINE L1 5680 6156 -23 7 2064 2519 103 42 5 chr1 193890952 193891331 -3304101 + ORR1B1 LTR MaLR 1 393 -1 7 2064 726 328 147 16 chr1 193891762 193892205 -3303227 + MT2A LTR ERVL 21 521 -12 7 2064 5708 170 101 35 chr1 193892562 193893520 -3301912 + RMER12 LTR ERVK 1 981 -341 7 2064 1051 44 81 0 chr1 193893520 193893656 -3301776 - B1_Mus1 SINE Alu 0 148 2 7 2064 5708 170 101 35 chr1 193893656 193893937 -3301495 + RMER12 LTR ERVK 982 1321 -1 7 2064 772 269 47 88 chr1 193894717 193895035 -3300397 + MTEa LTR MaLR 75 379 0 7 2064 346 324 111 12 chr1 193895238 193895410 -3300022 + MLT1A0 LTR MaLR 11 199 -166 7 2064 204 336 28 28 chr1 193895745 193895852 -3299580 + L2b LINE L2 2959 3065 -310 7 2064 254 346 107 38 chr1 193896053 193896212 -3299220 + RMER15 LTR ERVL 359 528 -47 7 2064 203 317 136 16 chr1 193896494 193896619 -3298813 + L2b LINE L2 3226 3365 -10 7 2064 342 0 0 0 chr1 193897155 193897193 -3298239 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 2064 470 231 179 11 chr1 193897198 193897382 -3298050 - Charlie1 DNA MER1_type -105 2676 2462 7 2064 277 364 99 7 chr1 193897386 193897538 -3297894 - Charlie1 DNA MER1_type -2602 179 14 7 2064 186 43 0 0 chr1 193897613 193897636 -3297796 + (T)n Simple_repeat Simple_repeat 1 23 0 7 2064 297 228 0 0 chr1 193899141 193899220 -3296212 + A-rich Low_complexity Low_complexity 1 79 0 7 2064 364 245 68 10 chr1 193899380 193899483 -3295949 - B3A SINE B2 -89 109 1 7 2064 331 156 140 20 chr1 193899619 193899746 -3295686 + (CAAAG)n Simple_repeat Simple_repeat 2 144 0 7 2064 5519 91 18 7 chr1 193899746 193900475 -3294957 + RMER19A LTR ERVK 1 737 0 7 2064 331 156 140 20 chr1 193900475 193900497 -3294935 + (CAAAG)n Simple_repeat Simple_repeat 5 29 0 7 2064 1545 207 0 35 chr1 193901413 193901703 -3293729 + B4 SINE B4 13 292 0 7 2064 737 184 13 1 chr1 193902128 193902262 -3293170 - MTD LTR MaLR 0 419 242 7 2064 327 245 50 33 chr1 193903073 193903169 -3292263 - MIRb SINE MIR -53 215 111 7 2064 382 337 59 20 chr1 193903250 193903453 -3291979 + MIRb SINE MIR 1 211 -57 7 2064 267 312 13 25 chr1 193903459 193903538 -3291894 + MER58A DNA MER1_type 35 112 -112 7 2064 1057 239 0 0 chr1 193903807 193904004 -3291428 + B3 SINE B2 1 197 -19 7 2064 261 83 0 0 chr1 193904004 193904040 -3291392 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 7 2064 454 91 26 0 chr1 193904196 193904273 -3291159 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 2064 345 162 20 10 chr1 193904391 193904469 -3290963 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 2064 420 71 0 0 chr1 193904469 193904525 -3290907 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 2064 345 162 20 10 chr1 193904525 193904546 -3290886 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 2064 243 296 12 8 chr1 193904557 193904813 -3290619 + (TG)n Simple_repeat Simple_repeat 1 257 0 7 2064 460 312 28 6 chr1 193904901 193905054 -3290378 - B4 SINE B4 -4 288 134 7 2064 1659 255 85 57 chr1 193906059 193906566 -3288866 + MER44B DNA MER2_type 9 529 -21 7 2064 774 244 50 0 chr1 193907207 193907387 -3288045 - B3 SINE B2 0 216 28 7 2064 812 99 7 51 chr1 193907393 193907531 -3287901 - URR1B DNA MER1_type -35 190 59 7 2064 392 67 0 16 chr1 193908086 193908147 -3287285 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 2064 732 221 14 0 chr1 193908159 193908299 -3287133 - B3A SINE B2 -56 142 1 7 2064 342 0 0 0 chr1 193908410 193908448 -3286984 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 2064 540 193 0 0 chr1 193908514 193908623 -3286809 + (TA)n Simple_repeat Simple_repeat 1 109 0 7 2064 268 254 31 16 chr1 193908665 193908729 -3286703 - ID4_ SINE ID -18 65 1 7 2064 359 211 39 52 chr1 193908737 193908839 -3286593 - B1F SINE Alu -8 141 48 7 2064 325 271 246 32 chr1 193908862 193909232 -3286200 + L2 LINE L2 2370 2818 -601 7 2064 2087 160 155 34 chr1 193909232 193909755 -3285677 + Lx9 LINE L1 7052 7637 -7 7 2064 236 313 88 57 chr1 193910633 193910860 -3284572 + L2 LINE L2 1391 1624 -1795 7 2064 238 245 137 11 chr1 193911117 193911212 -3284220 + L2 LINE L2 1982 2088 -1331 7 2064 351 0 0 0 chr1 193911385 193911424 -3284008 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 2064 636 272 136 0 chr1 193911620 193911804 -3283628 - B3 SINE B2 -6 210 2 7 2064 263 236 114 108 chr1 193912559 193912735 -3282697 - YREP_Mm Unknown Unknown -1454 358 182 7 2064 622 227 15 15 chr1 193912606 193912736 -3282696 + B1F SINE Alu 20 149 0 7 2064 767 240 93 7 chr1 193917802 193917970 -3277462 - B3 SINE B2 -25 191 26 7 2064 527 276 24 0 chr1 193918037 193918164 -3277268 - ID_B1 SINE B4 -20 204 75 7 2064 296 265 110 8 chr1 193918651 193918769 -3276663 + RMER1B Other Other 36 165 -901 7 2064 2896 229 84 29 chr1 193918956 193919441 -3275991 + RMER1C Other Other 528 1026 -316 7 2064 1300 102 16 21 chr1 193919441 193919631 -3275801 - B2_Mm2 SINE B2 -4 191 3 7 2064 2896 229 84 29 chr1 193919631 193919917 -3275515 + RMER1C Other Other 1027 1342 0 7 2064 256 266 26 0 chr1 193920310 193920325 -3275107 + ORR1B1-int LTR MaLR 632 649 -860 7 2064 943 61 92 0 chr1 193920325 193920456 -3274976 + B1_Mus1 SINE Alu 1 143 -5 7 2064 1290 103 0 54 chr1 193920516 193920721 -3274711 - B2_Mm2 SINE B2 0 195 2 7 2064 1256 41 0 0 chr1 193920742 193920889 -3274543 - B1_Mus2 SINE Alu 0 147 1 7 2064 560 258 47 35 chr1 193920889 193921058 -3274374 + B3 SINE B2 35 205 -11 7 2064 225 0 0 0 chr1 193921648 193921673 -3273759 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 2064 198 0 0 0 chr1 193921673 193921694 -3273738 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 2064 749 182 119 0 chr1 193922158 193922301 -3273131 + MT2A LTR ERVL 1 160 -373 7 2064 21 0 0 0 chr1 193924249 193924270 -3271162 + AT_rich Low_complexity Low_complexity 1 21 0 7 2064 241 47 0 44 chr1 193924313 193924358 -3271074 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7 2064 220 122 0 24 chr1 193925124 193925166 -3270266 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 2064 204 216 0 0 chr1 193927890 193927941 -3267491 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 2064 664 265 34 128 chr1 193927961 193928281 -3267151 - B4 SINE B4 0 292 3 7 2064 1244 48 0 0 chr1 193930900 193931047 -3264385 + B1_Mus1 SINE Alu 2 148 0 7 2064 243 0 0 0 chr1 193932014 193932041 -3263391 + (CAGAG)n Simple_repeat Simple_repeat 3 29 0 7 2064 438 225 56 40 chr1 193933600 193933725 -3261707 + PB1 SINE Alu 1 127 0 7 2064 462 298 6 76 chr1 193934059 193934230 -3261202 - RSINE1 SINE B4 -3 162 4 7 2064 180 125 0 0 chr1 193935000 193935032 -3260400 + (G)n Simple_repeat Simple_repeat 1 32 0 7 2064 879 19 0 0 chr1 193935631 193935736 -3259696 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 2064 211 290 29 0 chr1 193937946 193938015 -3257417 + MIRc SINE MIR 71 141 -127 7 2064 313 295 199 31 chr1 193938133 193938329 -3257103 - L1M4 LINE L1 -2549 3597 3369 7 2064 1194 170 35 10 chr1 193938333 193938535 -3256897 - B3 SINE B2 -9 207 1 7 2064 393 291 97 69 chr1 193938623 193938767 -3256665 - RSINE1 SINE B4 -7 158 11 7 2064 304 171 232 0 chr1 193938802 193938884 -3256548 - PB1D9 SINE Alu -6 114 14 7 2064 220 253 12 81 chr1 193940432 193940518 -3254914 - ID2 SINE ID -1 82 3 7 2064 1216 275 75 15 chr1 193940755 193941157 -3254275 - Tigger9b DNA MER2_type -5 619 194 7 2064 322 312 23 46 chr1 193941175 193941306 -3254126 - Tigger9b DNA MER2_type -495 129 2 7 2064 198 312 31 0 chr1 193941333 193941397 -3254035 - MIRc SINE MIR -128 140 75 7 2064 1265 27 0 20 chr1 193941527 193941677 -3253755 - B1_Mus2 SINE Alu 0 147 1 7 2064 829 160 14 14 chr1 193942217 193942363 -3253069 + B1_Mur4 SINE Alu 5 150 0 7 2064 195 69 0 0 chr1 193942363 193942392 -3253040 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 7 2064 765 250 92 0 chr1 193942408 193942592 -3252840 + B3 SINE B2 11 211 -5 7 2064 783 134 26 16 chr1 193942617 193942927 -3252505 + GA-rich Low_complexity Low_complexity 1 312 0 7 2064 912 173 0 20 chr1 193942927 193943080 -3252352 + B1_Mur4 SINE Alu 1 150 0 7 2064 231 348 44 22 chr1 193945180 193945271 -3250161 + L1MEd LINE L1 564 656 -5463 7 2064 623 271 74 52 chr1 193945670 193945867 -3249565 + B4A SINE B4 2 215 -77 7 2064 258 105 0 0 chr1 193945867 193945905 -3249527 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7 2064 623 271 74 52 chr1 193945905 193945976 -3249456 + B4A SINE B4 216 276 -16 7 2064 453 258 124 8 chr1 193946057 193946186 -3249246 + B3A SINE B2 39 182 -16 7 2064 324 0 0 0 chr1 193946664 193946700 -3248732 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 2064 279 0 0 0 chr1 193946998 193947029 -3248403 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 2064 464 272 52 13 chr1 193947035 193947188 -3248244 - B3A SINE B2 -38 160 2 8 2064 790 190 7 0 chr1 193947192 193947329 -3248103 - B1_Mur1 SINE Alu -11 138 1 8 2064 525 260 45 20 chr1 193949156 193949356 -3246076 + Lx9 LINE L1 7390 7594 -50 8 2064 687 237 0 7 chr1 193950719 193950859 -3244573 + B1_Mur2 SINE Alu 2 140 -9 8 2064 388 229 0 0 chr1 193950905 193950988 -3244444 + PB1D7 SINE Alu 18 100 -20 8 2064 2688 59 0 0 chr1 193951235 193951575 -3243857 + L1Md_F2 LINE L1 6243 6582 0 8 2064 243 88 0 0 chr1 193951692 193951726 -3243706 + (T)n Simple_repeat Simple_repeat 1 34 0 8 2064 242 309 137 7 chr1 193952651 193952804 -3242628 + MIR SINE MIR 44 216 -46 8 2064 23 0 0 0 chr1 193953272 193953295 -3242137 + AT_rich Low_complexity Low_complexity 1 23 0 8 2064 202 100 23 78 chr1 193956304 193956358 -3239074 + MIR SINE MIR 108 168 -100 8 2064 499 205 168 24 chr1 193956791 193956916 -3238516 - B1_Mur2 SINE Alu -6 143 1 8 2064 211 224 0 0 chr1 193956919 193956968 -3238464 + A-rich Low_complexity Low_complexity 1 49 0 8 2064 405 283 168 0 chr1 193956968 193957081 -3238351 - B4A SINE B4 -78 214 83 8 2064 248 183 141 0 chr1 193957124 193957195 -3238237 + Charlie2b DNA MER1_type 76 156 -2626 8 2064 298 331 75 0 chr1 193957231 193957364 -3238068 + Tigger7 DNA MER2_type 37 179 -2312 8 2064 557 259 101 98 chr1 193957656 193957943 -3237489 - B4A SINE B4 0 292 5 8 2064 36 23 0 0 chr1 193958065 193958108 -3237324 + AT_rich Low_complexity Low_complexity 1 43 0 8 2064 563 237 29 15 chr1 193958898 193959035 -3236397 + B1_Mm SINE Alu 9 147 0 8 2064 277 271 117 27 chr1 193959817 193959967 -3235465 - MIRm SINE MIR -73 195 23 8 2064 246 32 0 0 chr1 193961154 193961185 -3234247 + (CCCTG)n Simple_repeat Simple_repeat 2 32 0 8 2064 325 252 6 43 chr1 193961455 193961617 -3233815 + G-rich Low_complexity Low_complexity 6 161 0 8 2064 202 269 13 13 chr1 193961784 193961863 -3233569 + G-rich Low_complexity Low_complexity 3 81 0 8 2064 277 189 0 39 chr1 193961911 193961988 -3233444 + (CCCCG)n Simple_repeat Simple_repeat 4 77 0 8 2064 653 195 8 0 chr1 193963161 193963279 -3232153 - PB1D9 SINE Alu 0 120 2 8 2064 245 244 156 0 chr1 193964349 193964439 -3230993 + L1M5 LINE L1 4590 4693 -1453 8 2064 1001 150 29 112 chr1 193964440 193964582 -3230850 + URR1B DNA MER1_type 1 139 -86 8 2064 1057 45 15 22 chr1 193964582 193964718 -3230714 + B1_Mm SINE Alu 1 135 -12 8 2064 261 0 0 0 chr1 193964719 193964748 -3230684 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 2064 1001 150 29 112 chr1 193964748 193964843 -3230589 + URR1B DNA MER1_type 140 220 -5 8 2064 1023 217 10 19 chr1 193965616 193965823 -3229609 + B3 SINE B2 2 206 -10 8 2064 3511 25 2 0 chr1 193966078 193966473 -3228959 - MTA_Mm LTR MaLR 0 396 1 8 2064 2002 140 58 17 chr1 193966575 193966937 -3228495 + MTB_Mm LTR MaLR 1 377 -30 8 2064 641 280 91 0 chr1 193967337 193967512 -3227920 - MTEa-int LTR MaLR -1387 193 3 8 2064 468 248 18 0 chr1 193967514 193967623 -3227809 - MTEa LTR MaLR 0 379 269 8 2064 1154 161 24 0 chr1 193967711 193967916 -3227516 + ORR1B2 LTR MaLR 158 367 0 8 2064 24 32 0 0 chr1 193967947 193967978 -3227454 + AT_rich Low_complexity Low_complexity 1 31 0 8 2064 916 167 142 21 chr1 193967978 193968168 -3227264 - B3 SINE B2 -1 215 3 8 2064 254 232 35 58 chr1 193968194 193968281 -3227151 - MTEa LTR MaLR -15 364 280 8 2064 3201 177 78 24 chr1 193968547 193968937 -3226495 - Lx5 LINE L1 -125 6925 6499 8 2064 4993 126 12 11 chr1 193968937 193969673 -3225759 - RMER19A LTR ERVK 0 737 1 8 2064 3201 177 78 24 chr1 193969673 193969914 -3225518 - Lx5 LINE L1 -552 6498 6260 8 2064 268 282 82 0 chr1 193969916 193970001 -3225431 - MTEa LTR MaLR -248 111 20 8 2064 320 267 57 9 chr1 193970126 193970232 -3225200 - L1ME2z LINE L1 0 6444 6334 8 2064 694 305 223 7 chr1 193970372 193970821 -3224611 - MLT2B4 LTR ERVL -10 546 1 8 2064 1243 68 85 0 chr1 193970821 193970997 -3224435 + B2_Mm1t SINE B2 2 192 -1 8 2064 1429 74 10 10 chr1 193971654 193971846 -3223586 - B2_Mm2 SINE B2 -3 192 1 8 2064 2088 156 14 25 chr1 193971852 193972254 -3223178 + ORR1B1 LTR MaLR 3 394 0 8 2064 775 191 27 0 chr1 193972332 193972479 -3222953 - B3A SINE B2 -47 151 1 8 2064 369 0 0 0 chr1 193972977 193973018 -3222414 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 2064 390 21 0 0 chr1 193973018 193973064 -3222368 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 2064 478 327 0 56 chr1 193973064 193973226 -3222206 - B3A SINE B2 -36 162 10 8 2064 744 231 26 26 chr1 193974481 193974676 -3220756 + Lx7 LINE L1 7220 7414 -282 8 2064 225 250 82 12 chr1 193974702 193974787 -3220645 + Lx7 LINE L1 7587 7677 -19 8 2064 217 234 0 0 chr1 193974973 193975020 -3220412 + B1F1 SINE Alu 95 141 -8 8 2064 250 324 95 61 chr1 193975067 193975363 -3220069 + ORR1E LTR MaLR 54 359 0 8 2064 416 306 87 27 chr1 193975439 193975624 -3219808 + ID_B1 SINE B4 1 196 -28 8 2064 2276 24 0 151 chr1 193975916 193976260 -3219172 + RLTR10B LTR ERVK 1 292 0 8 2064 275 132 38 0 chr1 193976338 193976391 -3219041 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 8 2064 310 261 76 0 chr1 193976393 193976485 -3218947 - RSINE1 SINE B4 0 165 67 8 2064 767 213 45 22 chr1 193976838 193977016 -3218416 - MTD LTR MaLR -225 194 13 8 2064 228 146 62 0 chr1 193977123 193977171 -3218261 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 8 2064 237 33 0 0 chr1 193977178 193977208 -3218224 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 2064 2375 142 35 40 chr1 193977917 193978242 -3217190 + RMER4A LTR ERVK 6 319 -147 8 2064 2723 145 14 5 chr1 193978242 193978671 -3216761 + RLTR10C LTR ERVK 1 433 -3 8 2064 2375 142 35 40 chr1 193978671 193978800 -3216632 + RMER4A LTR ERVK 320 458 -8 8 2064 2903 23 48 8 chr1 193979362 193979715 -3215717 + IAPLTR1_Mm LTR ERVK 1 367 0 8 2064 4669 104 84 41 chr1 193979715 193980537 -3214895 + IAPEz-int LTR ERVK 8 864 -5617 8 2065 1437 291 51 43 chr1 193987695 193987870 -3207562 - Lx8 LINE L1 -214 7259 7088 8 2065 3325 30 25 0 chr1 193987870 193988271 -3207161 - RLTR10A LTR ERVK 0 411 1 8 2065 1437 291 51 43 chr1 193988271 193988605 -3206827 - Lx8 LINE L1 -386 7087 6746 8 2065 418 151 0 27 chr1 193988622 193988697 -3206735 + B1F SINE Alu 76 148 -1 8 2065 665 168 16 23 chr1 193988746 193988874 -3206558 - Lx8 LINE L1 -751 6722 6596 8 2065 887 65 0 8 chr1 193989310 193989434 -3205998 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 8 2065 332 240 156 52 chr1 193991270 193991392 -3204040 - Lx8 LINE L1 -2 7471 7348 8 2065 192 40 0 0 chr1 193991392 193991417 -3204015 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 8 2065 332 240 156 52 chr1 193991417 193991448 -3203984 - Lx8 LINE L1 -126 7347 7304 8 2065 453 19 0 0 chr1 193992271 193992325 -3203107 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 2065 672 231 89 0 chr1 193992879 193993104 -3202328 - MTD LTR MaLR -14 405 120 8 2065 271 279 35 104 chr1 193993486 193993630 -3201802 + RLTR24 LTR ERV1 321 454 -75 8 2065 909 135 61 0 chr1 193993681 193993844 -3201588 + ORR1C1 LTR MaLR 196 368 -10 8 2065 282 256 25 13 chr1 193993890 193993969 -3201463 + B4 SINE B4 205 284 -8 8 2065 254 284 17 56 chr1 193994747 193994985 -3200447 + (TATATG)n Simple_repeat Simple_repeat 1 228 0 8 2065 308 317 12 12 chr1 193994985 193995068 -3200364 - RSINE1 SINE B4 -1 164 82 8 2065 326 270 13 99 chr1 193995854 193996006 -3199426 - MER110 LTR ERV1 0 491 353 8 2065 672 180 57 171 chr1 193996019 193996300 -3199132 + MTE2a LTR MaLR 1 249 -130 8 2065 494 204 37 0 chr1 193996321 193996429 -3199003 - B3 SINE B2 -8 208 97 8 2065 425 285 22 37 chr1 193996448 193996583 -3198849 + MTE2a LTR MaLR 240 405 -14 8 2065 791 152 0 0 chr1 193996829 193996954 -3198478 - B3 SINE B2 -86 130 6 8 2065 495 0 0 0 chr1 193996957 193997012 -3198420 + (TTC)n Simple_repeat Simple_repeat 3 57 0 8 2065 866 136 7 0 chr1 193997058 193997198 -3198234 - B1_Mus1 SINE Alu -2 146 6 8 2065 1775 152 32 29 chr1 193997198 193997543 -3197889 - ORR1B1 LTR MaLR -8 386 41 8 2065 4337 141 69 76 chr1 193997556 193998452 -3196980 + RMER19B LTR ERVK 1 890 -12 8 2065 992 269 55 53 chr1 193998492 193998872 -3196560 + RLTR14 LTR ERV1 2 382 0 8 2065 5231 119 30 80 chr1 193999003 193999953 -3195479 - RLTR13D6 LTR ERVK 0 902 1 8 2065 1735 271 98 23 chr1 194000000 194000646 -3194786 - Lx8 LINE L1 -16 7457 6764 1 2065 955 170 171 54 chr1 194000740 194001020 -3194412 + RLTR20C LTR ERVK 1 313 -221 2 2065 808 201 12 38 chr1 194001017 194001177 -3194255 + RLTR20C LTR ERVK 423 578 0 2 2065 3135 45 47 5 chr1 194001862 194002246 -3193186 - MTB LTR MaLR 0 400 1 3 2065 332 242 180 16 chr1 194002311 194002433 -3192999 + MIR SINE MIR 3 144 -118 4 2065 1293 279 83 56 chr1 194002458 194003025 -3192407 + L1MC2 LINE L1 5355 5936 -408 5 2065 2513 147 46 0 chr1 194003064 194003459 -3191973 - MTC LTR MaLR -8 413 1 6 2065 427 221 0 23 chr1 194003483 194003571 -3191861 - MTC LTR MaLR 0 421 336 7 2065 4086 159 103 73 chr1 194003571 194004447 -3190985 + RMER19B LTR ERVK 1 902 0 8 2065 2163 145 6 3 chr1 194004447 194004773 -3190659 - MTC LTR MaLR -82 339 13 7 2065 22 0 0 0 chr1 194004773 194004795 -3190637 + AT_rich Low_complexity Low_complexity 1 22 0 9 2065 267 31 0 0 chr1 194006005 194006037 -3189395 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 2065 735 223 0 88 chr1 194006250 194006264 -3189168 - ORR1C2 LTR MaLR -207 177 168 1 2065 270 0 0 0 chr1 194006264 194006294 -3189138 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 2065 735 223 0 88 chr1 194006294 194006471 -3188961 - ORR1C2 LTR MaLR -217 167 3 1 2065 659 222 84 0 chr1 194006473 194006640 -3188792 - Lx9 LINE L1 -148 7496 7316 1 2065 1286 209 20 0 chr1 194006639 194006888 -3188544 + Lx9 LINE L1 7054 7307 -337 1 2065 494 187 140 0 chr1 194007379 194007486 -3187946 - B1F1 SINE Alu -9 140 19 1 2065 1008 229 9 5 chr1 194007536 194007751 -3187681 - B3 SINE B2 0 216 1 1 2065 202 264 0 0 chr1 194007918 194007971 -3187461 + GA-rich Low_complexity Low_complexity 3 55 0 1 2065 607 182 20 0 chr1 194008893 194008992 -3186440 - B1_Mur2 SINE Alu -48 101 1 1 2065 1107 67 60 0 chr1 194009019 194009169 -3186263 - L1_Mus1 LINE L1 -1 6566 6408 1 2065 2395 36 0 0 chr1 194009169 194009448 -3185984 + L1_Mus2 LINE L1 5827 6105 -461 1 2065 213 65 0 0 chr1 194009611 194009642 -3185790 + (T)n Simple_repeat Simple_repeat 1 31 0 2 2065 255 334 77 29 chr1 194010047 194010552 -3184880 + L1_Rod LINE L1 1330 1885 -3962 2 2065 446 340 12 30 chr1 194010571 194010735 -3184697 + RSINE1 SINE B4 4 164 -1 2 2065 577 291 36 12 chr1 194011528 194011695 -3183737 - B4 SINE B4 -8 284 114 2 2065 342 0 0 0 chr1 194011697 194011735 -3183697 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2065 516 323 31 31 chr1 194011738 194011898 -3183534 - B3A SINE B2 -38 160 1 2 2065 376 250 54 11 chr1 194011898 194011989 -3183443 - B4 SINE B4 -197 95 1 2 2065 266 215 0 0 chr1 194012277 194012342 -3183090 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 2065 486 0 0 0 chr1 194012853 194012907 -3182525 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 2065 306 0 0 0 chr1 194012907 194012940 -3182492 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 2065 693 255 96 0 chr1 194013347 194013535 -3181897 - B3 SINE B2 -9 207 2 2 2065 216 0 0 0 chr1 194015011 194015035 -3180397 + (T)n Simple_repeat Simple_repeat 1 24 0 3 2065 360 0 0 0 chr1 194016359 194016399 -3179033 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 2065 348 24 0 0 chr1 194016460 194016501 -3178931 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 2065 235 295 39 0 chr1 194017374 194017452 -3177980 - ID4 SINE ID -1 82 2 3 2065 180 0 0 0 chr1 194017839 194017859 -3177573 + (CGAG)n Simple_repeat Simple_repeat 1 20 0 3 2065 407 227 0 11 chr1 194018255 194018344 -3177088 - RMER15 LTR ERVL -136 439 352 3 2065 469 270 68 56 chr1 194018782 194018943 -3176489 + RSINE1 SINE B4 3 165 0 3 2065 338 256 0 6 chr1 194018949 194019130 -3176302 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 2065 231 262 50 0 chr1 194019130 194019210 -3176222 + (CAGA)n Simple_repeat Simple_repeat 1 84 0 3 2065 368 249 0 3 chr1 194019211 194019509 -3175923 + (CA)n Simple_repeat Simple_repeat 1 296 0 3 2065 444 240 0 0 chr1 194019550 194019729 -3175703 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 2065 273 29 0 0 chr1 194019765 194019799 -3175633 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 2065 36 23 0 0 chr1 194020588 194020631 -3174801 + AT_rich Low_complexity Low_complexity 1 43 0 3 2065 284 179 13 0 chr1 194020723 194020801 -3174631 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 2065 233 274 208 13 chr1 194021124 194021283 -3174149 - L1M5 LINE L1 -413 5827 5638 4 2065 369 0 0 0 chr1 194021629 194021670 -3173762 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 2065 219 69 0 0 chr1 194021835 194021864 -3173568 + (A)n Simple_repeat Simple_repeat 1 29 0 4 2065 467 284 82 7 chr1 194021887 194022022 -3173410 + B4A SINE B4 25 169 -123 4 2065 266 324 25 107 chr1 194021907 194022066 -3173366 + B3A SINE B2 46 191 -7 4 2065 2009 13 0 0 chr1 194023033 194023258 -3172174 - L1Md_A LINE L1 -502 6080 5856 4 2065 5172 14 0 0 chr1 194023258 194023830 -3171602 + L1Md_A LINE L1 6011 6582 0 4 2065 1469 70 16 0 chr1 194023846 194024032 -3171400 + B2_Mm2 SINE B2 1 189 -6 4 2065 755 201 12 36 chr1 194024133 194024298 -3171134 - RSINE1 SINE B4 0 165 5 4 2065 719 179 7 0 chr1 194025088 194025233 -3170199 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 2065 317 269 46 37 chr1 194025377 194025485 -3169947 - MIRb SINE MIR -46 222 114 5 2065 965 214 60 71 chr1 194025485 194025837 -3169595 - RLTR15 LTR ERVK -11 348 1 5 2065 391 170 110 4 chr1 194025927 194026034 -3169398 + MTE2a LTR MaLR 1 109 -310 5 2065 619 282 91 34 chr1 194026771 194026980 -3168452 + MTE2a LTR MaLR 70 290 -89 5 2065 256 352 0 0 chr1 194027025 194027113 -3168319 + MER5A DNA MER1_type 98 185 -4 5 2065 342 291 102 28 chr1 194027805 194027982 -3167450 - LTR48B LTR ERV1 -58 729 540 5 2065 735 262 19 0 chr1 194027994 194028154 -3167278 - RSINE1 SINE B4 -2 163 1 5 2065 813 288 43 61 chr1 194028170 194028454 -3166978 - LTR48B LTR ERV1 -277 367 86 5 2065 492 18 0 0 chr1 194028454 194028511 -3166921 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 2065 813 288 43 61 chr1 194028511 194028555 -3166877 - LTR48B LTR ERV1 -559 85 45 5 2065 251 235 50 29 chr1 194028777 194028917 -3166515 + (TCTG)n Simple_repeat Simple_repeat 1 143 0 5 2065 835 58 331 7 chr1 194029007 194029146 -3166286 + B2_Mm2 SINE B2 1 184 -11 5 2065 1889 138 18 21 chr1 194029408 194029734 -3165698 - ORR1A4 LTR MaLR 0 329 5 5 2065 618 62 31 0 chr1 194029734 194029830 -3165602 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 2065 227 244 13 0 chr1 194029979 194030057 -3165375 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 2065 501 181 32 0 chr1 194030149 194030243 -3165189 - MTD LTR MaLR -322 97 1 6 2065 592 310 53 0 chr1 194030332 194030503 -3164929 - B3A SINE B2 -16 182 3 6 2065 867 70 0 0 chr1 194031073 194031188 -3164244 + (TCCCC)n Simple_repeat Simple_repeat 2 116 0 6 2065 1028 239 9 0 chr1 194031192 194031405 -3164027 + B3 SINE B2 1 215 -1 6 2065 522 173 0 0 chr1 194031461 194031565 -3163867 + CT-rich Low_complexity Low_complexity 1 104 0 6 2065 288 0 0 0 chr1 194031565 194031597 -3163835 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 2065 325 295 13 0 chr1 194031597 194031675 -3163757 + B1F SINE Alu 46 124 -25 6 2065 238 154 36 55 chr1 194031681 194031736 -3163696 + PB1D7 SINE Alu 67 120 0 6 2065 203 56 56 0 chr1 194031737 194031773 -3163659 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 2065 354 309 83 32 chr1 194032724 194032744 -3162688 + MER2 DNA MER2_type 141 160 -185 7 2065 315 0 0 0 chr1 194032744 194032779 -3162653 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 2065 354 309 83 32 chr1 194032779 194032915 -3162517 + MER2 DNA MER2_type 161 303 -42 7 2065 270 116 0 0 chr1 194032939 194032982 -3162450 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 2065 1855 264 127 30 chr1 194032995 194033663 -3161769 - Lx9 LINE L1 -174 7470 6738 7 2065 317 273 39 39 chr1 194033849 194033952 -3161480 - L1MCa LINE L1 -4505 2003 1901 7 2065 696 218 0 0 chr1 194033953 194034132 -3161300 + (CATA)n Simple_repeat Simple_repeat 2 180 0 7 2065 663 226 0 0 chr1 194034134 194034493 -3160939 + (CA)n Simple_repeat Simple_repeat 1 359 0 7 2065 623 232 75 37 chr1 194034525 194034713 -3160719 - L1MA4 LINE L1 -382 5918 5724 7 2065 696 256 0 0 chr1 194034713 194034846 -3160586 - RSINE1 SINE B4 -23 142 10 7 2065 207 0 0 0 chr1 194035853 194035876 -3159556 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 2065 225 0 0 0 chr1 194035876 194035900 -3159532 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 2065 401 283 8 0 chr1 194035900 194036020 -3159412 + (CA)n Simple_repeat Simple_repeat 2 122 0 8 2065 305 208 0 13 chr1 194036086 194036164 -3159268 + MLT2B4 LTR ERVL 1 77 -479 8 2065 544 186 193 0 chr1 194036173 194036313 -3159119 - L1M3 LINE L1 -1487 4653 4487 8 2065 3093 67 2 36 chr1 194036726 194036939 -3158493 + MTB_Mm LTR MaLR 1 205 -202 8 2065 3549 30 0 0 chr1 194036939 194037335 -3158097 - MTA_Mm LTR MaLR 0 396 1 8 2065 3093 67 2 36 chr1 194037335 194037542 -3157890 + MTB_Mm LTR MaLR 206 407 0 8 2065 1736 195 47 80 chr1 194037542 194037942 -3157490 - MTD LTR MaLR -32 387 1 8 2065 338 278 59 59 chr1 194038225 194038378 -3157054 - HAL1-3A_ME LINE L1 -413 2445 2293 8 2065 205 373 40 0 chr1 194039007 194039082 -3156350 + MIRc SINE MIR 2 79 -189 8 2065 372 22 0 0 chr1 194039777 194039822 -3155610 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 2065 1102 182 209 22 chr1 194039866 194040181 -3155251 - ORR1D1 LTR MaLR 0 374 1 9 2065 434 283 88 70 chr1 194040273 194040444 -3154988 - B4A SINE B4 -117 175 2 9 2065 432 310 78 0 chr1 194040447 194040576 -3154856 - ID_B1 SINE B4 -1 223 85 9 2065 1413 65 40 5 chr1 194040765 194040967 -3154465 + L1_Mus3 LINE L1 6430 6638 0 9 2065 6268 55 0 10 chr1 194040987 194041816 -3153616 - L1Md_F2 LINE L1 0 6582 5807 9 2065 577 218 26 84 chr1 194042003 194042158 -3153274 + RSINE1 SINE B4 14 159 -6 9 2065 465 175 42 12 chr1 194042374 194042542 -3152890 + (CA)n Simple_repeat Simple_repeat 1 173 0 9 2065 880 306 28 11 chr1 194042897 194043184 -3152248 + B4A SINE B4 1 292 0 9 2065 328 228 42 155 chr1 194043190 194043403 -3152029 - RLTR21 LTR ERVK -318 1254 1066 9 2065 1679 31 0 0 chr1 194043403 194043594 -3151838 + B2_Mm1a SINE B2 2 192 -1 1 2065 351 0 0 0 chr1 194043681 194043720 -3151712 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 2065 1121 57 0 41 chr1 194043892 194044039 -3151393 + B1_Mus1 SINE Alu 2 142 -6 1 2065 216 0 0 0 chr1 194044042 194044066 -3151366 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 2065 3532 33 0 0 chr1 194044607 194045003 -3150429 - MTA_Mm LTR MaLR 0 396 1 1 2065 907 262 25 0 chr1 194045612 194045814 -3149618 - ID_B1 SINE B4 -10 214 8 1 2065 432 0 0 0 chr1 194046078 194046126 -3149306 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 2065 453 90 0 0 chr1 194047930 194047997 -3147435 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 2065 264 341 0 0 chr1 194048556 194048641 -3146791 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 2065 257 327 45 18 chr1 194050150 194050262 -3145170 - MamRep137 DNA TcMar? -2 442 328 1 2065 195 333 37 0 chr1 194051600 194051654 -3143778 + L2b LINE L2 3284 3339 -36 1 2065 228 331 93 39 chr1 194051660 194051677 -3143755 + B4 SINE B4 69 92 -200 1 2065 419 289 49 16 chr1 194051677 194051800 -3143632 + B1F2 SINE Alu 3 129 -20 1 2065 534 317 6 24 chr1 194051787 194051955 -3143477 - MTE-int LTR MaLR -1357 223 59 1 2065 464 303 20 129 chr1 194051978 194052179 -3143253 - MTEa LTR MaLR 0 379 201 1 2065 1465 206 87 9 chr1 194052206 194052539 -3142893 + ORR1E LTR MaLR 1 359 0 1 2065 355 271 31 0 chr1 194052588 194052684 -3142748 + PB1D10 SINE Alu 1 99 -18 1 2065 504 0 0 0 chr1 194052686 194052742 -3142690 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 1 2065 1176 68 7 0 chr1 194052743 194052890 -3142542 - B1_Mus1 SINE Alu 0 148 1 1 2065 346 332 90 87 chr1 194053367 194053644 -3141788 - B4A SINE B4 0 292 15 1 2065 213 39 0 0 chr1 194056071 194056097 -3139335 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1 2065 645 237 44 0 chr1 194056672 194056807 -3138625 - B1_Mur4 SINE Alu -8 142 2 1 2065 374 338 52 48 chr1 194056824 194057073 -3138359 - L1M5 LINE L1 -1009 5137 4888 1 2065 321 47 0 0 chr1 194057113 194057156 -3138276 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 2065 554 228 200 5 chr1 194057205 194057392 -3138040 - B4 SINE B4 -3 289 66 1 2065 268 212 0 36 chr1 194057593 194057676 -3137756 + CT-rich Low_complexity Low_complexity 2 81 0 1 2065 987 136 14 0 chr1 194057703 194057850 -3137582 - B1_Mur4 SINE Alu 0 150 2 1 2065 323 365 80 10 chr1 194057940 194058139 -3137293 - L1M5 LINE L1 -1466 4680 4468 1 2065 184 297 102 71 chr1 194058381 194058508 -3136924 - MIRb SINE MIR -114 154 24 1 2065 222 37 0 0 chr1 194058910 194058937 -3136495 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1 2065 450 301 126 26 chr1 194059706 194059897 -3135535 - LTR79 LTR ERVL -38 489 280 1 2065 252 0 0 0 chr1 194060745 194060773 -3134659 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 2065 740 276 105 75 chr1 194061215 194061592 -3133840 - MTE2a LTR MaLR 0 419 23 1 2065 345 47 0 0 chr1 194062081 194062124 -3133308 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1 2065 400 322 17 22 chr1 194064266 194064444 -3130988 + (CATA)n Simple_repeat Simple_repeat 3 179 0 1 2065 182 328 0 43 chr1 194064860 194064930 -3130502 + L3 LINE CR1 2505 2571 -1918 1 2065 387 265 116 65 chr1 194066703 194066978 -3128454 - B4A SINE B4 -3 289 1 1 2065 420 225 33 48 chr1 194067198 194067408 -3128024 - L1MCa LINE L1 -2912 3409 3203 1 2065 1370 80 0 0 chr1 194067423 194067610 -3127822 - L1Md_F2 LINE L1 0 6582 6396 1 2065 23 33 0 0 chr1 194067611 194067641 -3127791 + AT_rich Low_complexity Low_complexity 1 30 0 1 2065 1026 234 57 32 chr1 194067722 194068005 -3127427 - B4A SINE B4 -2 290 1 1 2065 346 209 366 0 chr1 194068014 194068167 -3127265 - L1MCa LINE L1 -3656 2665 2457 1 2065 374 281 91 0 chr1 194068303 194068424 -3127008 - L1MCa LINE L1 -4235 2273 2142 1 2065 1047 267 59 0 chr1 194068490 194068763 -3126669 - B4A SINE B4 0 292 4 1 2065 252 51 0 49 chr1 194068775 194068816 -3126616 - L1MCa LINE L1 -4371 2137 2099 1 2065 227 274 172 25 chr1 194068865 194069022 -3126410 + RLTR21 LTR ERVK 1067 1246 -326 1 2065 651 306 19 0 chr1 194069031 194069191 -3126241 - RSINE1 SINE B4 0 165 3 1 2065 1456 284 144 40 chr1 194069191 194069545 -3125887 - L1MCa LINE L1 -4618 1890 1488 1 2065 1440 230 43 37 chr1 194069545 194069920 -3125512 + MTE2b LTR MaLR 3 379 0 1 2065 1456 284 144 40 chr1 194069920 194070840 -3124592 - L1MCa LINE L1 -5021 1487 483 1 2065 489 244 16 47 chr1 194070840 194070969 -3124463 + RMER20B LTR ERVK 1 125 -502 1 2065 510 215 90 23 chr1 194072123 194072256 -3123176 + B4 SINE B4 83 224 -68 1 2065 591 258 47 59 chr1 194072258 194072427 -3123005 + B3A SINE B2 26 192 -6 1 2065 1003 237 43 83 chr1 194072516 194072889 -3122543 - ORR1E LTR MaLR 0 359 2 1 2065 886 162 13 31 chr1 194073679 194073838 -3121594 - B3A SINE B2 -42 156 1 1 2065 362 281 92 42 chr1 194073987 194074106 -3121326 - RMER15 LTR ERVL -2 573 449 1 2065 404 181 59 69 chr1 194074087 194074188 -3121244 - RMER15 LTR ERVL -449 126 27 1 2065 335 267 102 84 chr1 194074257 194074413 -3121019 - L1M2 LINE L1 -849 5294 5123 1 2065 317 321 87 53 chr1 194074489 194074696 -3120736 - L1MC4a LINE L1 -1995 5887 5674 1 2065 187 51 49 49 chr1 194074967 194075008 -3120424 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 1 2065 488 296 51 77 chr1 194075022 194075453 -3119979 - L1MD LINE L1 -674 5685 5266 1 2065 368 309 55 16 chr1 194075895 194076023 -3119409 - B4A SINE B4 -159 133 1 1 2065 4756 188 61 10 chr1 194076327 194077079 -3118353 - Lx9 LINE L1 0 7644 6841 1 2065 2249 127 3 0 chr1 194077079 194077403 -3118029 + ORR1A2 LTR MaLR 1 325 -2 1 2065 4756 188 61 10 chr1 194077403 194077613 -3117819 - Lx9 LINE L1 -804 6840 6633 1 2065 220 216 265 0 chr1 194077877 194077979 -3117453 - MIR SINE MIR -77 185 57 1 2065 26 0 0 0 chr1 194078190 194078216 -3117216 + AT_rich Low_complexity Low_complexity 1 26 0 1 2065 508 269 39 58 chr1 194078256 194078410 -3117022 + RSINE1 SINE B4 9 159 -6 1 2065 420 20 0 0 chr1 194078411 194078460 -3116972 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 2065 241 287 56 22 chr1 194078468 194078557 -3116875 - L1MEe LINE L1 -4220 634 543 1 2065 227 269 138 9 chr1 194079634 194079743 -3115689 - YREP_Mm Unknown Unknown -1458 354 232 1 2065 457 237 20 40 chr1 194079673 194079774 -3115658 + PB1D9 SINE Alu 9 107 -13 1 2065 8010 32 0 0 chr1 194080481 194081407 -3114025 + L1Md_T LINE L1 5657 6582 0 1 2065 2735 156 105 4 chr1 194081660 194082182 -3113250 + RMER15 LTR ERVL 1 575 0 1 2065 448 228 0 53 chr1 194082609 194082799 -3112633 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 2065 434 272 383 0 chr1 194082813 194083022 -3112410 - B4A SINE B4 -2 290 2 1 2065 236 278 40 53 chr1 194083577 194083653 -3111779 + MIRb SINE MIR 5 79 -189 1 2065 401 294 104 58 chr1 194084181 194084270 -3111162 + B4 SINE B4 111 212 -80 1 2065 225 94 0 0 chr1 194084270 194084302 -3111130 + (CAAG)n Simple_repeat Simple_repeat 4 35 0 1 2065 401 294 104 58 chr1 194084302 194084385 -3111047 + B4 SINE B4 213 291 -1 1 2065 423 0 0 0 chr1 194085185 194085232 -3110200 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 2065 186 316 123 0 chr1 194085961 194086018 -3109414 + L2c LINE L2 3242 3305 -82 1 2065 181 333 77 39 chr1 194086385 194086463 -3108969 - MIRb SINE MIR -71 197 117 1 2065 431 276 151 32 chr1 194086783 194087034 -3108398 + MER33 DNA MER1_type 1 281 -43 1 2065 1242 189 4 109 chr1 194087527 194087794 -3107638 + ORR1B1 LTR MaLR 1 239 -155 1 2065 1652 153 160 44 chr1 194087900 194088263 -3107169 - RMER20B LTR ERVK -222 405 1 1 2065 1058 115 12 24 chr1 194088263 194088432 -3107000 + ORR1A4 LTR MaLR 163 329 0 1 2065 180 276 121 0 chr1 194088464 194088522 -3106910 + L3 LINE CR1 2103 2167 -2322 1 2065 859 278 140 27 chr1 194088646 194089060 -3106372 + L1MB1 LINE L1 5657 6117 -72 1 2065 835 204 151 24 chr1 194089272 194089523 -3105909 + B4A SINE B4 2 284 -8 1 2065 312 27 0 0 chr1 194089550 194089587 -3105845 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 2065 360 43 0 0 chr1 194089587 194089632 -3105800 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 2065 243 0 0 0 chr1 194089783 194089810 -3105622 + (A)n Simple_repeat Simple_repeat 1 27 0 1 2065 500 311 118 51 chr1 194090258 194090648 -3104784 + MTD LTR MaLR 3 418 -1 1 2065 2488 137 48 10 chr1 194091427 194091825 -3103607 + MTC LTR MaLR 1 413 -8 1 2065 339 85 0 0 chr1 194092110 194092157 -3103275 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 2065 914 275 56 32 chr1 194092185 194092470 -3102962 - B4 SINE B4 0 292 1 1 2065 311 324 54 43 chr1 194092963 194093147 -3102285 + B4A SINE B4 106 291 -1 1 2065 370 228 70 0 chr1 194093888 194094002 -3101430 - L1MD1 LINE L1 -220 6022 5901 1 2065 627 240 98 10 chr1 194094011 194094205 -3101227 + B4 SINE B4 8 218 -74 1 2065 192 77 0 0 chr1 194094212 194094238 -3101194 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 2065 210 128 0 0 chr1 194094261 194094300 -3101132 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 2065 457 308 0 7 chr1 194094299 194094596 -3100836 + (CA)n Simple_repeat Simple_repeat 1 294 0 1 2065 273 265 273 0 chr1 194094971 194095103 -3100329 - L1MD1 LINE L1 -888 5471 5304 1 2065 356 264 87 13 chr1 194095413 194095563 -3099869 - L1MD1 LINE L1 -1287 4859 4699 1 2065 1814 290 125 59 chr1 194095679 194097117 -3098315 - L1MD1 LINE L1 -1435 4711 3210 1 2065 249 70 365 95 chr1 194097117 194097180 -3098252 - ID4_ SINE ID -3 80 1 1 2065 1814 290 125 59 chr1 194097180 194097737 -3097695 - L1MD1 LINE L1 -2937 3209 2586 1 2065 300 347 151 30 chr1 194097815 194098014 -3097418 - L1MDa LINE L1 -3536 3001 2779 1 2065 648 0 0 0 chr1 194098139 194098211 -3097221 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 1 2065 1782 153 42 47 chr1 194098218 194098667 -3096765 + RMER17C LTR ERVK 16 441 -517 1 2065 265 307 106 7 chr1 194098797 194098938 -3096494 - L1MDa LINE L1 -5471 1162 1008 1 2065 247 309 79 24 chr1 194099015 194099141 -3096291 - B1F1 SINE Alu -15 134 2 1 2065 310 365 52 26 chr1 194099257 194099600 -3095832 - L1MDa LINE L1 -6069 564 213 1 2065 684 259 68 28 chr1 194099719 194099939 -3095493 - ID_B1 SINE B4 -79 213 1 1 2065 206 299 38 79 chr1 194100122 194100234 -3095198 + L2a LINE L2 3261 3421 -5 2 2065 462 281 94 0 chr1 194102179 194102307 -3093125 - ID_B1 SINE B4 -3 221 82 2 2065 685 275 103 4 chr1 194102595 194102847 -3092585 + B4A SINE B4 1 277 -15 2 2065 253 258 30 0 chr1 194102857 194102923 -3092509 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2 2065 3409 143 18 149 chr1 194102923 194103703 -3091729 - RLTR33 LTR ERVK 0 678 1 2 2065 234 248 24 71 chr1 194103910 194104036 -3091396 - RMER12 LTR ERVK -466 856 737 2 2065 1916 119 42 63 chr1 194105170 194105503 -3089929 - ORR1A3 LTR MaLR 0 326 1 2 2065 380 172 71 22 chr1 194106692 194106794 -3088638 + PB1D10 SINE Alu 19 126 -1 2 2065 328 98 43 21 chr1 194106801 194106895 -3088537 + (CAAA)n Simple_repeat Simple_repeat 1 96 0 2 2065 361 241 124 22 chr1 194106919 194107008 -3088424 + PB1 SINE Alu 21 118 -9 2 2065 576 29 0 0 chr1 194107600 194107670 -3087762 + (GGA)n Simple_repeat Simple_repeat 1 70 0 2 2065 607 296 122 14 chr1 194107768 194108138 -3087294 + L1MC1 LINE L1 5797 6206 -127 2 2065 430 148 36 22 chr1 194109100 194109238 -3086194 + (TCTG)n Simple_repeat Simple_repeat 1 140 0 2 2065 922 237 32 42 chr1 194109913 194110129 -3085303 - B3 SINE B2 0 216 3 2 2065 391 242 155 6 chr1 194110529 194110759 -3084673 - L1MEg LINE L1 -4590 2043 1800 2 2065 296 276 58 0 chr1 194111281 194111368 -3084064 - MER58C DNA MER1_type -91 124 33 2 2065 399 352 121 30 chr1 194111390 194111654 -3083778 - L1MEg LINE L1 -4980 1653 1366 2 2065 488 355 112 28 chr1 194111977 194112728 -3082704 - L1MEg LINE L1 -5265 1368 555 2 2065 1125 184 37 41 chr1 194113221 194113454 -3081978 + RLTR20B3 LTR ERVK 1 231 -346 2 2065 495 0 0 0 chr1 194113454 194113509 -3081923 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 2065 1125 263 52 105 chr1 194113509 194113553 -3081879 + RLTR20B3 LTR ERVK 215 260 -162 2 2065 931 203 129 8 chr1 194113549 194113797 -3081635 + RLTR20B3 LTR ERVK 195 472 -105 2 2065 1076 90 21 0 chr1 194113797 194113941 -3081491 + B1_Mus1 SINE Alu 2 148 0 2 2065 407 224 71 10 chr1 194114002 194114101 -3081331 + RLTR20B3 LTR ERVK 458 562 -15 2 2065 23 0 0 0 chr1 194114620 194114643 -3080789 + AT_rich Low_complexity Low_complexity 1 23 0 2 2065 367 246 96 56 chr1 194114831 194114956 -3080476 + B1_Mur3 SINE Alu 18 147 -2 2 2065 21 36 0 0 chr1 194114956 194114984 -3080448 + AT_rich Low_complexity Low_complexity 1 28 0 2 2065 335 289 0 53 chr1 194115624 194115719 -3079713 - B4A SINE B4 0 292 203 2 2065 214 294 194 40 chr1 194116078 194116202 -3079230 - MIRc SINE MIR -118 150 8 2 2065 189 0 0 0 chr1 194117115 194117136 -3078296 + (A)n Simple_repeat Simple_repeat 1 21 0 2 2066 766 261 98 20 chr1 194117633 194117887 -3077545 - B4 SINE B4 -18 274 1 2 2066 21 0 0 0 chr1 194118226 194118247 -3077185 + AT_rich Low_complexity Low_complexity 1 21 0 2 2066 206 234 21 0 chr1 194118362 194118409 -3077023 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 2066 514 261 193 31 chr1 194118679 194119098 -3076334 - L1MA7 LINE L1 -130 6161 5675 2 2066 2288 98 3 16 chr1 194119718 194120038 -3075394 - ORR1A3 LTR MaLR -8 318 3 2 2066 806 294 117 12 chr1 194121929 194122270 -3073162 + Lx8 LINE L1 7095 7471 -2 2 2066 1281 236 70 17 chr1 194122458 194122815 -3072617 - MTEa LTR MaLR 0 379 4 2 2066 387 0 0 0 chr1 194123050 194123093 -3072339 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 2066 306 0 0 0 chr1 194123093 194123126 -3072306 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 2066 291 271 100 40 chr1 194123129 194123229 -3072203 - RSINE1 SINE B4 -13 152 47 2 2066 420 279 81 76 chr1 194124698 194124971 -3070461 - RLTR12B LTR ERVK -31 497 241 2 2066 663 161 0 0 chr1 194124973 194125091 -3070341 + CT-rich Low_complexity Low_complexity 2 119 0 2 2066 608 250 94 62 chr1 194125091 194125355 -3070077 - RLTR12B LTR ERVK -254 314 43 2 2066 335 259 50 107 chr1 194125459 194125580 -3069852 - PB1D7 SINE Alu -2 118 5 2 2066 524 312 50 0 chr1 194126157 194126298 -3069134 + MTE2a LTR MaLR 21 168 -211 2 2066 349 256 25 41 chr1 194126436 194126558 -3068874 - PB1D7 SINE Alu 0 120 1 2 2066 221 318 47 0 chr1 194127286 194127371 -3068061 + B4 SINE B4 65 153 -139 2 2066 562 244 25 0 chr1 194127313 194127432 -3068000 + B1_Mur1 SINE Alu 10 131 -18 2 2066 378 0 0 0 chr1 194127433 194127475 -3067957 + (CAAG)n Simple_repeat Simple_repeat 3 44 0 2 2066 482 119 0 12 chr1 194127477 194127562 -3067870 + (CAG)n Simple_repeat Simple_repeat 2 85 0 2 2066 621 304 18 24 chr1 194128671 194128836 -3066596 + B3A SINE B2 1 164 -34 2 2066 471 78 0 0 chr1 194128841 194128905 -3066527 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 2066 22 0 0 0 chr1 194129390 194129412 -3066020 + AT_rich Low_complexity Low_complexity 1 22 0 2 2066 244 323 62 111 chr1 194129790 194130114 -3065318 + RMER10A LTR ERVL 18 325 -117 2 2066 342 193 75 54 chr1 194130140 194130233 -3065199 + RMER10A LTR ERVL 321 415 -27 2 2066 268 24 24 24 chr1 194130418 194130460 -3064972 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 2066 777 273 76 37 chr1 194130758 194131138 -3064294 + L1M4 LINE L1 3680 4074 -2072 2 2066 590 309 109 18 chr1 194131822 194132105 -3063327 - Lx8 LINE L1 -2 7471 7163 2 2066 369 256 189 0 chr1 194132269 194132433 -3062999 - Lx9 LINE L1 -157 7487 7293 2 2066 830 307 28 14 chr1 194132431 194132718 -3062714 - Lx8 LINE L1 -488 6985 6695 2 2066 372 97 0 0 chr1 194132742 194132804 -3062628 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 2066 311 293 0 0 chr1 194132819 194132901 -3062531 - ID2 SINE ID 0 83 2 2 2066 334 235 66 75 chr1 194132935 194133041 -3062391 - PB1D10 SINE Alu -12 105 1 2 2066 21 0 0 0 chr1 194133255 194133276 -3062156 + AT_rich Low_complexity Low_complexity 1 21 0 2 2066 2313 106 22 3 chr1 194133276 194133597 -3061835 + ORR1A2 LTR MaLR 1 327 0 2 2066 10823 130 68 19 chr1 194133597 194135468 -3059964 + ORR1A2-int LTR MaLR 1 1963 0 2 2066 247 162 0 0 chr1 194135468 194135505 -3059927 + ORR1A2 LTR MaLR 1 37 -292 2 2066 378 61 0 0 chr1 194135511 194135560 -3059872 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 2066 618 279 0 24 chr1 194135578 194135747 -3059685 - RSINE1 SINE B4 0 165 1 2 2066 213 221 158 61 chr1 194136602 194136684 -3058748 + MIRc SINE MIR 179 268 0 2 2066 658 320 105 17 chr1 194136977 194137339 -3058093 - MER63B DNA AcHobo -37 399 6 2 2066 422 309 85 47 chr1 194137344 194137602 -3057830 + L1M5 LINE L1 2908 3175 -2971 2 2066 396 0 0 0 chr1 194137747 194137791 -3057641 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 2066 1181 171 169 87 chr1 194137926 194138073 -3057359 - RMER17C LTR ERVK 0 410 227 2 2066 186 43 0 0 chr1 194138073 194138096 -3057336 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 2066 1181 171 169 87 chr1 194138096 194138327 -3057105 - RMER17C LTR ERVK -184 226 1 2 2066 582 264 54 6 chr1 194138490 194138658 -3056774 - Lx8 LINE L1 -326 7147 6972 2 2066 359 250 20 7 chr1 194138665 194138814 -3056618 + CT-rich Low_complexity Low_complexity 1 151 0 2 2066 1368 224 111 41 chr1 194138814 194139197 -3056235 - Lx8 LINE L1 -674 7022 6614 2 2066 285 315 87 0 chr1 194139712 194139839 -3055593 - Lx8 LINE L1 -840 6633 6496 2 2066 227 54 27 0 chr1 194139918 194139955 -3055477 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 2 2066 399 327 36 31 chr1 194140061 194140418 -3055014 + L1M5 LINE L1 3803 4161 -1985 2 2066 186 43 0 0 chr1 194140570 194140593 -3054839 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 2066 423 0 0 0 chr1 194140593 194140639 -3054793 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 2066 508 237 114 0 chr1 194140709 194140823 -3054609 + ID_B1 SINE B4 66 192 -32 2 2066 313 118 0 50 chr1 194141501 194141581 -3053851 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 2 2066 577 144 34 23 chr1 194141648 194141825 -3053607 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 2066 288 307 48 29 chr1 194142142 194142246 -3053186 + PB1D10 SINE Alu 11 116 -1 2 2066 295 261 182 42 chr1 194143053 194143289 -3052143 + L1MD LINE L1 5560 5828 -414 2 2066 1713 47 54 1 chr1 194146000 194146247 -3049185 - MTA_Mm LTR MaLR 0 400 137 2 2066 328 26 0 0 chr1 194146220 194146259 -3049173 - MTA_Mm-int LTR MaLR -1059 39 1 2 2066 3296 24 34 0 chr1 194146259 194146642 -3048790 - MTA_Mm LTR MaLR 0 396 1 2 2066 366 108 0 0 chr1 194147361 194147426 -3048006 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 2066 192 356 129 0 chr1 194147432 194147533 -3047899 + L2b LINE L2 3227 3340 -35 2 2066 408 40 0 0 chr1 194148504 194148554 -3046878 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 2066 846 338 36 15 chr1 194148712 194149045 -3046387 + MER58B DNA MER1_type 2 341 0 2 2066 225 290 239 20 chr1 194149205 194149402 -3046030 - MIRc SINE MIR -14 254 15 2 2066 253 220 17 0 chr1 194149465 194149524 -3045908 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 2066 594 348 20 47 chr1 194149527 194149730 -3045702 - B4A SINE B4 -1 291 94 2 2066 1840 193 52 54 chr1 194149730 194150173 -3045259 - RMER10A LTR ERVL 0 442 1 2 2066 594 348 20 47 chr1 194150173 194150265 -3045167 - B4A SINE B4 -199 93 4 2 2066 198 103 0 0 chr1 194151511 194151540 -3043892 + (CCCCCT)n Simple_repeat Simple_repeat 3 31 0 2 2066 574 261 61 8 chr1 194151597 194151728 -3043704 - ID_B1 SINE B4 0 224 87 2 2066 327 266 25 0 chr1 194151812 194151891 -3043541 - MIR SINE MIR -81 181 101 2 2066 348 228 32 21 chr1 194152126 194152220 -3043212 + PB1D10 SINE Alu 1 95 -22 2 2066 2496 117 93 8 chr1 194152743 194153131 -3042301 - MTC LTR MaLR 0 421 1 2 2066 225 321 144 25 chr1 194153314 194153557 -3041875 + L1MC1 LINE L1 5719 5990 -343 2 2066 1017 130 0 0 chr1 194154295 194154457 -3040975 + (TC)n Simple_repeat Simple_repeat 1 162 0 2 2066 180 0 0 0 chr1 194155204 194155224 -3040208 + (T)n Simple_repeat Simple_repeat 1 20 0 2 2066 565 249 74 69 chr1 194155984 194156187 -3039245 + ID_B1 SINE B4 1 204 -20 2 2066 933 315 58 84 chr1 194156239 194156264 -3039168 - MLT2B5 LTR ERVL -53 664 640 2 2066 369 0 0 0 chr1 194156264 194156305 -3039127 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 2066 933 315 58 84 chr1 194156305 194156826 -3038606 - MLT2B5 LTR ERVL -78 639 132 2 2066 290 329 199 33 chr1 194157064 194157400 -3038032 + L2a LINE L2 3020 3411 -15 2 2066 464 308 20 20 chr1 194157400 194157546 -3037886 + B1F SINE Alu 2 147 -2 2 2066 802 214 117 49 chr1 194158171 194158436 -3036996 + B4A SINE B4 1 283 -9 3 2066 459 186 0 0 chr1 194158469 194158571 -3036861 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 2066 270 262 48 36 chr1 194158603 194158686 -3036746 + B4A SINE B4 1 84 -208 3 2066 498 70 0 0 chr1 194158688 194158759 -3036673 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 2066 735 244 91 0 chr1 194160926 194161123 -3034309 + B3 SINE B2 2 216 0 3 2066 756 244 78 0 chr1 194161962 194162155 -3033277 + ID_B1 SINE B4 2 209 -15 3 2066 225 263 18 0 chr1 194162160 194162217 -3033215 + GA-rich Low_complexity Low_complexity 1 58 0 3 2066 552 265 7 26 chr1 194162727 194162878 -3032554 - B1F SINE Alu -1 148 1 3 2066 558 187 0 0 chr1 194162978 194163133 -3032299 + GA-rich Low_complexity Low_complexity 2 156 0 3 2066 202 345 114 9 chr1 194164478 194164592 -3030840 - MIRm SINE MIR -38 238 113 3 2066 1228 61 0 0 chr1 194166038 194166185 -3029247 - B1_Mus2 SINE Alu 0 147 1 3 2066 533 366 57 25 chr1 194166503 194166759 -3028673 - MLT1J LTR MaLR -180 332 36 3 2066 1555 153 94 48 chr1 194168483 194168706 -3026726 - RMER17C LTR ERVK 0 410 193 3 2066 1114 89 6 6 chr1 194168706 194168876 -3026556 + (GAGAA)n Simple_repeat Simple_repeat 5 174 0 3 2066 1555 153 94 48 chr1 194168876 194169044 -3026388 - RMER17C LTR ERVK -218 192 1 3 2066 208 289 116 116 chr1 194169129 194169301 -3026131 - MIRc SINE MIR -37 231 60 3 2066 245 354 10 0 chr1 194171946 194172042 -3023390 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 2066 326 290 0 11 chr1 194172042 194172220 -3023212 + (TATG)n Simple_repeat Simple_repeat 3 178 0 3 2066 474 120 0 0 chr1 194172310 194172385 -3023047 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 2066 297 250 68 14 chr1 194172396 194172469 -3022963 - ID4 SINE ID -3 80 4 3 2066 842 220 6 23 chr1 194172615 194172632 -3022800 - L1MA4 LINE L1 -299 6001 5988 3 2066 261 0 0 0 chr1 194172632 194172661 -3022771 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 2066 842 220 6 23 chr1 194172661 194172820 -3022612 - L1MA4 LINE L1 -313 5987 5828 3 2066 775 238 109 64 chr1 194172910 194172975 -3022457 - B4A SINE B4 -13 279 222 3 2066 254 106 21 0 chr1 194172975 194173022 -3022410 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 2066 775 238 109 64 chr1 194173022 194173221 -3022211 - B4A SINE B4 -71 221 3 3 2066 2185 189 63 22 chr1 194174191 194174650 -3020782 + L1_Mus4 LINE L1 6159 6636 0 3 2066 222 150 0 0 chr1 194174965 194175005 -3020427 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 3 2066 2295 95 28 0 chr1 194175997 194176314 -3019118 + ORR1A3 LTR MaLR 1 326 0 3 2066 243 353 79 29 chr1 194176334 194176474 -3018958 - MIR SINE MIR -65 197 51 3 2066 276 133 0 0 chr1 194177349 194177409 -3018023 + (T)n Simple_repeat Simple_repeat 1 60 0 3 2066 1161 206 64 63 chr1 194177409 194177778 -3017654 - RLTR20C LTR ERVK -212 366 1 3 2066 389 325 124 60 chr1 194179841 194180106 -3015326 + ORR1E LTR MaLR 75 356 -3 3 2066 1192 164 102 0 chr1 194180969 194181195 -3014237 - MTC LTR MaLR -73 348 100 3 2066 2034 118 0 78 chr1 194181195 194181543 -3013889 + ORR1A4 LTR MaLR 1 321 -8 3 2066 464 84 0 90 chr1 194181528 194181606 -3013826 - MTC LTR MaLR -305 116 46 3 2066 284 214 100 0 chr1 194181654 194181724 -3013708 - ID4_ SINE ID -5 78 2 3 2066 215 155 17 0 chr1 194181999 194182023 -3013409 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 2066 1227 34 0 26 chr1 194182023 194182174 -3013258 + B1_Mm SINE Alu 1 147 0 3 2066 215 155 17 0 chr1 194182174 194182207 -3013225 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 2066 554 195 30 6 chr1 194182691 194182856 -3012576 + (TATG)n Simple_repeat Simple_repeat 4 172 0 3 2066 474 328 0 56 chr1 194184105 194184152 -3011280 - RSINE1 SINE B4 -24 141 102 3 2066 3204 46 7 34 chr1 194184152 194184561 -3010871 - MTB LTR MaLR -2 398 1 3 2066 474 328 0 56 chr1 194184561 194184655 -3010777 - RSINE1 SINE B4 -64 101 8 3 2066 289 216 183 75 chr1 194184761 194184778 -3010654 - B4A SINE B4 0 292 281 3 2066 324 70 0 0 chr1 194184778 194184821 -3010611 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 2066 289 216 183 75 chr1 194184821 194184923 -3010509 - B4A SINE B4 -12 280 160 3 2066 240 270 88 73 chr1 194185480 194185616 -3009816 + RMER15 LTR ERVL 418 555 -20 3 2066 606 109 0 0 chr1 194186197 194186289 -3009143 + (TCCC)n Simple_repeat Simple_repeat 3 94 0 3 2066 344 113 0 31 chr1 194186837 194186901 -3008531 + (GGA)n Simple_repeat Simple_repeat 3 64 0 3 2066 303 171 0 0 chr1 194187121 194187197 -3008235 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 2066 319 325 125 5 chr1 194187305 194187497 -3007935 + L1MEc LINE L1 504 718 -5682 3 2066 1327 268 26 40 chr1 194187860 194188237 -3007195 + RLTR18B LTR ERVK 141 512 0 3 2066 330 210 134 2 chr1 194188250 194188337 -3007095 - MTE2a LTR MaLR -323 96 8 3 2066 258 32 0 0 chr1 194188536 194188567 -3006865 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 2066 244 346 0 46 chr1 194188671 194188720 -3006712 - YREP_Mm Unknown Unknown -1454 358 315 3 2066 404 227 37 0 chr1 194188720 194188809 -3006623 + B1F2 SINE Alu 3 94 -55 3 2066 296 324 6 22 chr1 194190100 194190280 -3005152 + (GGATG)n Simple_repeat Simple_repeat 3 179 0 3 2066 281 269 60 0 chr1 194190225 194190392 -3005040 + (CAGG)n Simple_repeat Simple_repeat 1 177 0 3 2066 211 343 0 0 chr1 194190404 194190509 -3004923 + (GGATG)n Simple_repeat Simple_repeat 5 109 0 3 2066 5517 94 29 39 chr1 194190951 194191828 -3003604 - RLTR13A3 LTR ERVK 0 978 111 3 2066 180 97 0 0 chr1 194192843 194192874 -3002558 + (C)n Simple_repeat Simple_repeat 1 31 0 3 2066 265 246 333 14 chr1 194192903 194193125 -3002307 - L1MC1 LINE L1 -104 6229 5937 3 2066 180 97 0 0 chr1 194193128 194193159 -3002273 + (T)n Simple_repeat Simple_repeat 1 31 0 3 2066 493 200 19 19 chr1 194193162 194193269 -3002163 + PB1D9 SINE Alu 1 107 -13 3 2066 263 0 81 0 chr1 194193269 194193306 -3002126 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 2066 1276 278 116 16 chr1 194193320 194193828 -3001604 - L1MC1 LINE L1 -392 5941 5383 3 2066 522 273 52 19 chr1 194193824 194194037 -3001395 - L1MC1 LINE L1 -1059 5087 4868 3 2066 246 112 191 48 chr1 194194133 194194217 -3001215 - L1MC LINE L1 -2925 3221 3126 3 2066 360 317 54 30 chr1 194194206 194194490 -3000942 - L1MA5A LINE L1 0 6300 6008 3 2066 1538 207 74 36 chr1 194194490 194194855 -3000577 - MTE2b LTR MaLR 0 379 1 3 2066 285 335 66 38 chr1 194194855 194194917 -3000515 - L1MA5A LINE L1 -293 6007 5944 3 2066 1216 284 103 25 chr1 194195036 194195607 -2999825 - L1MC LINE L1 -3140 3006 2391 3 2066 201 48 22 67 chr1 194196321 194196366 -2999066 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 3 2066 249 235 72 24 chr1 194197329 194197412 -2998020 + MTEa LTR MaLR 272 358 -21 3 2066 258 302 65 65 chr1 194198072 194198196 -2997236 - RMER1C Other Other -3 1339 1216 3 2066 520 237 43 0 chr1 194198623 194198762 -2996670 - L1M2 LINE L1 -642 5658 5514 3 2066 410 304 10 0 chr1 194198799 194198901 -2996531 - B1F1 SINE Alu -45 104 2 3 2066 404 223 11 11 chr1 194198902 194198997 -2996435 - L1M2 LINE L1 -814 5486 5392 3 2066 614 49 0 0 chr1 194199096 194199178 -2996254 - L1Md_A LINE L1 0 6582 6501 3 2066 501 17 0 0 chr1 194199723 194199781 -2995651 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 2066 971 198 88 0 chr1 194199814 194200006 -2995426 - B3 SINE B2 -7 209 1 3 2066 334 247 0 92 chr1 194200012 194200110 -2995322 + L1MD2 LINE L1 5928 6016 -343 3 2066 306 312 175 55 chr1 194200182 194200399 -2995033 + L1M5 LINE L1 4885 5127 -1019 3 2066 269 257 263 22 chr1 194200466 194200645 -2994787 + L1M5 LINE L1 5259 5480 -964 3 2066 217 186 8 42 chr1 194201609 194201727 -2993705 + (CAGA)n Simple_repeat Simple_repeat 3 116 0 3 2066 825 236 75 10 chr1 194202085 194202286 -2993146 - B3 SINE B2 -2 214 1 3 2066 180 0 0 0 chr1 194202553 194202573 -2992859 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 2066 591 173 102 0 chr1 194202871 194202998 -2992434 + RCHARR1 DNA MER1_type 832 971 -3 3 2066 547 129 8 25 chr1 194203114 194203233 -2992199 + (CA)n Simple_repeat Simple_repeat 1 117 0 3 2066 217 322 51 0 chr1 194203330 194203389 -2992043 + PB1D10 SINE Alu 42 103 -14 3 2066 450 182 0 25 chr1 194203403 194203482 -2991950 + ID4_ SINE ID 2 78 -5 3 2066 377 332 160 36 chr1 194203977 194204202 -2991230 + MLT1G3 LTR MaLR 329 581 -14 3 2066 278 250 75 0 chr1 194205530 194205610 -2989822 - MIRb SINE MIR -65 203 118 3 2066 1681 184 164 6 chr1 194206226 194206586 -2988846 - MTC LTR MaLR 0 421 5 3 2066 183 361 43 27 chr1 194206686 194206871 -2988561 + L2b LINE L2 2918 3105 -270 3 2066 184 102 71 71 chr1 194207220 194207262 -2988170 - MIRc SINE MIR -202 66 25 3 2066 221 57 29 0 chr1 194207994 194208029 -2987403 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 2066 467 254 0 119 chr1 194208043 194208186 -2987246 - RSINE1 SINE B4 -38 127 2 3 2066 627 216 56 21 chr1 194208685 194208827 -2986605 - B1F SINE Alu -2 147 1 3 2066 2303 156 26 34 chr1 194210554 194210972 -2984460 - MTC LTR MaLR 0 421 7 3 2066 246 251 113 97 chr1 194211569 194211613 -2983819 - B2_Mm2 SINE B2 -7 188 1 3 2066 680 250 14 7 chr1 194211613 194211754 -2983678 - RSINE1 SINE B4 -21 144 3 3 2066 233 230 0 10 chr1 194212327 194212428 -2983004 + CT-rich Low_complexity Low_complexity 1 100 0 3 2066 333 0 0 0 chr1 194212441 194212478 -2982954 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 2066 253 316 0 0 chr1 194212522 194212579 -2982853 - B4 SINE B4 0 292 236 3 2066 183 42 0 0 chr1 194215608 194215632 -2979800 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 2066 21 0 0 0 chr1 194215884 194215905 -2979527 + AT_rich Low_complexity Low_complexity 1 21 0 3 2066 274 290 0 0 chr1 194217132 194217194 -2978238 + B4A SINE B4 1 62 -230 3 2066 628 260 70 22 chr1 194217745 194217930 -2977502 - MLT1A0 LTR MaLR -28 337 144 3 2066 306 259 0 0 chr1 194217945 194218003 -2977429 - ORR1E LTR MaLR -297 62 5 3 2066 473 211 8 0 chr1 194218900 194219023 -2976409 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 2066 301 259 3 38 chr1 194219027 194219316 -2976116 + (CATATA)n Simple_repeat Simple_repeat 1 278 0 4 2066 204 268 0 0 chr1 194219615 194219697 -2975735 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 2066 250 295 87 32 chr1 194219887 194220013 -2975419 + L3 LINE CR1 4017 4149 -340 4 2066 306 97 16 31 chr1 194220531 194220587 -2974845 + B2_Mm1t SINE B2 131 186 -7 4 2066 1099 95 0 0 chr1 194220587 194220735 -2974697 + B1_Mus1 SINE Alu 1 148 0 4 2066 306 0 0 0 chr1 194221125 194221159 -2974273 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 2066 342 190 0 0 chr1 194221384 194221442 -2973990 - ID_B1 SINE B4 -55 169 112 4 2066 287 61 0 39 chr1 194221908 194221959 -2973473 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 4 2066 223 167 48 0 chr1 194221960 194222002 -2973430 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 4 2066 649 285 62 44 chr1 194222015 194222287 -2973145 - B4 SINE B4 -14 278 2 4 2066 1023 229 5 19 chr1 194222298 194222507 -2972925 - B3 SINE B2 0 216 11 4 2066 185 329 71 0 chr1 194222510 194222580 -2972852 - L2a LINE L2 -16 3410 3336 4 2066 188 294 90 56 chr1 194222984 194223128 -2972304 - L2a LINE L2 -563 2856 2708 4 2066 660 312 26 52 chr1 194223716 194223946 -2971486 - MLT1A0 LTR MaLR -141 224 1 4 2066 280 318 37 86 chr1 194224392 194224554 -2970878 - MIRb SINE MIR -99 169 16 4 2066 273 325 72 13 chr1 194226035 194226188 -2969244 - MLT1G1 LTR MaLR -203 376 215 4 2066 382 294 72 29 chr1 194226866 194227072 -2968360 + MLT1A LTR MaLR 98 361 -13 4 2066 2237 141 33 14 chr1 194227364 194227724 -2967708 + ORR1B2 LTR MaLR 1 367 0 4 2066 220 347 95 0 chr1 194228431 194228526 -2966906 + MIRc SINE MIR 49 152 -116 4 2066 452 282 73 12 chr1 194230011 194230176 -2965256 - MER5A DNA MER1_type 0 189 15 4 2066 1151 214 108 54 chr1 194230497 194230813 -2964619 - ORR1E LTR MaLR -23 336 4 4 2066 426 286 47 9 chr1 194231073 194231209 -2964223 + B1F SINE Alu 1 141 -8 4 2066 1960 158 22 59 chr1 194231495 194231851 -2963581 + ORR1A1 LTR MaLR 4 346 0 4 2066 1540 192 92 26 chr1 194231888 194232235 -2963197 + ORR1D2 LTR MaLR 1 370 0 4 2066 378 129 0 0 chr1 194232532 194232594 -2962838 + (GGA)n Simple_repeat Simple_repeat 2 63 0 4 2066 293 306 91 7 chr1 194233541 194233791 -2961641 + L1MD1 LINE L1 5816 6088 -91 4 2066 303 257 65 19 chr1 194234028 194234135 -2961297 + L1M3 LINE L1 5089 5200 -946 4 2066 688 299 73 0 chr1 194234143 194234320 -2961112 + B4A SINE B4 25 214 -78 4 2066 411 21 0 0 chr1 194234320 194234368 -2961064 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 4 2066 252 270 48 0 chr1 194234370 194234433 -2960999 + B4A SINE B4 149 214 -78 4 2066 258 32 0 0 chr1 194234436 194234467 -2960965 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 4 2066 643 274 33 0 chr1 194234468 194234621 -2960811 + RSINE1 SINE B4 6 163 -2 4 2066 583 293 14 21 chr1 194234710 194234960 -2960472 + L1M3 LINE L1 5214 5467 -713 4 2066 1161 271 59 70 chr1 194234966 194235215 -2960217 - MTE2a LTR MaLR -10 369 139 4 2066 2357 160 59 11 chr1 194235215 194235658 -2959774 - RMER4A LTR ERVK -2 464 1 4 2066 1161 271 59 70 chr1 194235658 194235781 -2959651 - MTE2a LTR MaLR -241 138 1 4 2066 739 188 30 0 chr1 194235911 194236044 -2959388 - B1_Mur1 SINE Alu -2 147 11 4 2066 1147 89 0 0 chr1 194236052 194236198 -2959234 - B1_Mus2 SINE Alu 0 147 2 4 2066 345 206 12 1 chr1 194236278 194236349 -2959083 - MTD LTR MaLR -23 396 308 4 2066 236 292 168 50 chr1 194236406 194236507 -2958925 + L2b LINE L2 3244 3356 -19 4 2066 320 204 68 154 chr1 194237359 194237521 -2957911 + MER96B DNA hAT 194 341 -76 4 2066 277 235 86 29 chr1 194237951 194238021 -2957411 - B1_Mur1 SINE Alu -9 140 67 4 2066 458 212 127 0 chr1 194237994 194238112 -2957320 - ID_B1 SINE B4 -24 200 68 4 2066 238 312 167 0 chr1 194238395 194238491 -2956941 + PB1D10 SINE Alu 3 114 -3 4 2066 467 278 3 3 chr1 194238718 194239060 -2956372 + (TG)n Simple_repeat Simple_repeat 1 342 0 4 2066 234 250 0 0 chr1 194239111 194239183 -2956249 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 2066 1560 27 5 16 chr1 194239186 194239371 -2956061 - B2_Mm1a SINE B2 -9 184 2 4 2066 364 330 0 8 chr1 194239409 194239528 -2955904 + (TG)n Simple_repeat Simple_repeat 1 118 0 4 2066 183 205 0 0 chr1 194239529 194239568 -2955864 + (CATG)n Simple_repeat Simple_repeat 1 39 0 4 2066 482 234 136 14 chr1 194239568 194239715 -2955717 - RSINE1 SINE B4 0 165 1 4 2066 235 327 58 69 chr1 194240143 194240317 -2955115 + MIR3 SINE MIR 2 173 -35 4 2066 399 339 107 0 chr1 194240640 194240808 -2954624 + MIR SINE MIR 27 212 -50 4 2066 208 395 0 34 chr1 194240935 194241053 -2954379 + MIRm SINE MIR 162 275 -1 4 2066 190 263 35 0 chr1 194241053 194241110 -2954322 + MIRb SINE MIR 206 264 -4 4 2066 672 312 26 11 chr1 194241223 194241495 -2953937 - Lx8 LINE L1 -93 7380 7105 4 2066 326 257 60 49 chr1 194241639 194241823 -2953609 + L1MA4 LINE L1 6100 6285 -15 4 2066 525 243 0 0 chr1 194241825 194241969 -2953463 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 2066 306 274 140 17 chr1 194242203 194242351 -2953081 + L2c LINE L2 2992 3157 -269 4 2066 228 315 43 33 chr1 194243861 194243953 -2951479 - MIRb SINE MIR -80 188 96 4 2066 195 42 0 0 chr1 194246580 194246604 -2948828 + (T)n Simple_repeat Simple_repeat 1 24 0 4 2066 307 331 42 30 chr1 194247786 194247951 -2947481 + MER53 DNA hAT 26 192 -1 4 2066 1780 200 87 15 chr1 194248000 194248391 -2947041 + MTD LTR MaLR 1 419 0 4 2067 643 269 20 51 chr1 194249053 194249067 -2946365 + B4A SINE B4 102 113 -179 4 2067 615 48 0 0 chr1 194249067 194249150 -2946282 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 2067 643 269 20 51 chr1 194249150 194249331 -2946101 + B4A SINE B4 114 291 -1 4 2067 264 30 0 0 chr1 194249358 194249391 -2946041 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 2067 270 81 0 0 chr1 194249467 194249504 -2945928 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 2067 224 340 91 50 chr1 194251323 194251543 -2943889 - L2c LINE L2 -39 3348 3120 4 2067 297 125 0 0 chr1 194252485 194252541 -2942891 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 2067 896 154 28 0 chr1 194252557 194252700 -2942732 + B1_Mur1 SINE Alu 1 147 -2 4 2067 1076 272 126 29 chr1 194253013 194253354 -2942078 - MTE2b LTR MaLR -4 375 2 4 2067 189 0 0 0 chr1 194254427 194254448 -2940984 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 2067 386 330 131 47 chr1 194255858 194256198 -2939234 - MLT1H1 LTR MaLR -175 373 28 4 2067 443 298 108 54 chr1 194257101 194257421 -2938011 - MLT1A0 LTR MaLR -14 376 11 4 2067 744 329 72 4 chr1 194257837 194258115 -2937317 - RMER15 LTR ERVL 0 575 279 4 2067 583 220 11 91 chr1 194258116 194258291 -2937141 - RMER15 LTR ERVL -414 161 1 4 2067 737 238 0 27 chr1 194262604 194262751 -2932681 + B1F SINE Alu 6 148 -1 4 2067 500 254 52 0 chr1 194262836 194262970 -2932462 + B1F SINE Alu 1 141 -8 4 2067 297 0 0 0 chr1 194264971 194265004 -2930428 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 2067 1397 52 30 35 chr1 194265992 194266161 -2929271 + L1Md_F3 LINE L1 6386 6559 -25 4 2067 1625 41 0 15 chr1 194266161 194266357 -2929075 + B2_Mm1a SINE B2 1 193 0 4 2067 1397 52 30 35 chr1 194266357 194266386 -2929046 + L1Md_F3 LINE L1 6560 6583 -1 4 2067 294 73 0 0 chr1 194269009 194269050 -2926382 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 2067 297 220 0 0 chr1 194269291 194269400 -2926032 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 2067 349 211 19 19 chr1 194269404 194269510 -2925922 + (TCTG)n Simple_repeat Simple_repeat 3 108 0 4 2067 323 239 6 0 chr1 194269510 194269677 -2925755 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 2067 696 295 130 47 chr1 194270468 194270891 -2924541 - MLT1C LTR MaLR -4 463 6 4 2067 2055 91 28 3 chr1 194271205 194271493 -2923939 - L1_Mus3 LINE L1 -1 6637 6343 4 2067 912 60 0 0 chr1 194271493 194271610 -2923822 + L1_Mus3 LINE L1 6213 6329 -309 4 2067 477 254 15 30 chr1 194273175 194273309 -2922123 + MER5A1 DNA MER1_type 32 163 -3 4 2067 195 100 0 0 chr1 194274333 194274363 -2921069 + (T)n Simple_repeat Simple_repeat 1 30 0 4 2067 274 374 16 31 chr1 194276528 194276655 -2918777 + MER5A DNA MER1_type 63 187 -2 4 2067 230 286 24 97 chr1 194277284 194277408 -2918024 - ORR1D1 LTR MaLR -13 361 247 4 2067 819 0 0 0 chr1 194277919 194278010 -2917422 + (CCCTAA)n Simple_repeat Simple_repeat 4 94 0 4 2067 660 273 167 72 chr1 194280153 194280488 -2914944 + MTE2a LTR MaLR 8 374 -5 4 2067 23 68 0 0 chr1 194280727 194280771 -2914661 + AT_rich Low_complexity Low_complexity 1 44 0 4 2067 378 0 0 0 chr1 194281405 194281447 -2913985 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 2067 498 103 0 0 chr1 194282193 194282280 -2913152 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 2067 180 224 20 0 chr1 194282457 194282506 -2912926 - L2 LINE L2 -1076 2343 2294 4 2067 871 264 72 4 chr1 194284000 194284236 -2911196 + MLT1A0 LTR MaLR 38 289 -76 4 2067 207 0 0 0 chr1 194284237 194284260 -2911172 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 4 2067 318 307 104 28 chr1 194284270 194284414 -2911018 + HAL1-3A_ME LINE L1 2284 2438 -420 4 2067 379 99 42 0 chr1 194284435 194284506 -2910926 + MLT1A1 LTR MaLR 334 407 -1 4 2067 883 301 25 22 chr1 194285950 194286228 -2909204 - B4 SINE B4 -13 279 1 4 2067 1172 252 82 20 chr1 194288003 194288352 -2907080 + MTD LTR MaLR 1 354 -65 4 2067 229 296 67 90 chr1 194288192 194288370 -2907062 + RMER17D LTR ERVK 60 233 -656 4 2067 349 206 10 10 chr1 194288745 194288848 -2906584 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 2067 7820 1 0 0 chr1 194289194 194290039 -2905393 - L1Md_A LINE L1 0 6582 5738 5 2067 36770 5 4 1 chr1 194290039 194295780 -2899652 - L1Md_A LINE L1 -324 5559 1 5 2067 953 202 33 17 chr1 194296060 194296308 -2899124 + MTC LTR MaLR 2 421 0 5 2067 1587 124 60 8 chr1 194296529 194296780 -2898652 - MTC LTR MaLR -156 265 2 5 2067 278 309 164 76 chr1 194298540 194298778 -2896654 - MT2A LTR ERVL -179 354 96 5 2067 297 0 0 0 chr1 194298840 194298873 -2896559 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 2067 181 307 36 96 chr1 194299125 194299208 -2896224 - MER5B DNA MER1_type -79 99 22 5 2067 230 330 87 29 chr1 194299689 194299792 -2895640 - MTB LTR MaLR -125 275 167 5 2067 269 175 17 17 chr1 194300060 194300118 -2895314 - MTE2b LTR MaLR -8 371 314 5 2067 510 61 0 0 chr1 194300119 194300185 -2895247 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 5 2067 1094 264 125 0 chr1 194300193 194300481 -2894951 - MTE2b LTR MaLR -55 324 1 5 2067 1354 181 148 41 chr1 194303118 194303457 -2891975 - MTE2b LTR MaLR 0 379 5 5 2067 1587 129 138 10 chr1 194303698 194304010 -2891422 - Lx5 LINE L1 0 7050 6699 5 2067 566 285 53 109 chr1 194305134 194305418 -2890014 - ORR1E LTR MaLR -49 310 43 5 2067 203 374 182 0 chr1 194307089 194307188 -2888244 + MIRb SINE MIR 74 190 -78 5 2067 279 0 0 0 chr1 194307442 194307473 -2887959 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 2067 360 0 0 0 chr1 194307473 194307512 -2887920 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 2067 607 347 155 8 chr1 194307564 194307965 -2887467 - MLT1C LTR MaLR 0 467 8 5 2067 1088 270 50 67 chr1 194308055 194308656 -2886776 + MTE2a LTR MaLR 3 369 -50 5 2067 309 109 0 0 chr1 194309377 194309432 -2886000 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 2067 484 311 0 16 chr1 194310463 194310736 -2884696 + (CATA)n Simple_repeat Simple_repeat 1 268 0 5 2067 225 376 0 22 chr1 194310656 194310838 -2884594 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 5 2067 220 355 13 26 chr1 194310759 194310915 -2884517 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 2067 191 219 31 0 chr1 194310942 194311006 -2884426 + (CATA)n Simple_repeat Simple_repeat 4 69 0 5 2067 266 252 43 17 chr1 194311029 194311146 -2884286 + (CATA)n Simple_repeat Simple_repeat 4 123 0 5 2067 396 138 0 0 chr1 194311149 194311214 -2884218 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 2067 420 282 0 43 chr1 194311262 194311447 -2883985 + (CATA)n Simple_repeat Simple_repeat 4 180 0 5 2067 207 0 0 0 chr1 194311447 194311470 -2883962 + (CG)n Simple_repeat Simple_repeat 2 24 0 5 2067 197 236 208 0 chr1 194311625 194311697 -2883735 + MIRm SINE MIR 120 206 -70 5 2067 186 122 0 7 chr1 194311803 194311841 -2883591 + MIR SINE MIR 112 151 -125 5 2067 212 370 8 40 chr1 194312272 194312396 -2883036 + MIRc SINE MIR 107 226 -42 5 2067 193 224 81 65 chr1 194313401 194313463 -2881969 + L3b LINE CR1 176 238 -244 5 2067 232 261 116 0 chr1 194314582 194314651 -2880781 - L1MC LINE L1 -2440 5442 5366 5 2067 1110 37 0 0 chr1 194315109 194315244 -2880188 + (TG)n Simple_repeat Simple_repeat 2 136 0 5 2067 545 215 95 70 chr1 194315373 194315573 -2879859 + B3 SINE B2 3 207 -9 5 2067 554 349 82 62 chr1 194315761 194316324 -2879108 + HAL1 LINE L1 1002 1575 -932 5 2067 498 246 99 22 chr1 194316328 194316536 -2878896 - MTEa LTR MaLR 0 379 171 5 2067 229 154 0 0 chr1 194316540 194316579 -2878853 - MLT2B4 LTR ERVL 0 556 518 5 2067 193 89 44 0 chr1 194316580 194316625 -2878807 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 2067 258 105 0 0 chr1 194316625 194316663 -2878769 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 2067 327 352 0 0 chr1 194316665 194316827 -2878605 + (TG)n Simple_repeat Simple_repeat 1 162 0 5 2067 627 39 0 0 chr1 194316840 194316918 -2878514 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 2067 448 268 22 56 chr1 194317022 194317172 -2878260 - MTEa LTR MaLR -228 142 11 5 2067 186 427 22 0 chr1 194318870 194318959 -2876473 - MIRc SINE MIR -122 146 56 5 2067 290 311 92 79 chr1 194319120 194319398 -2876034 - MLT1B LTR MaLR -30 360 79 5 2067 207 0 0 0 chr1 194319398 194319421 -2876011 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 2067 290 311 92 79 chr1 194319421 194319446 -2875986 - MLT1B LTR MaLR -312 78 54 5 2067 260 284 125 19 chr1 194319912 194319929 -2875503 - MLT2B3 LTR ERVL -349 205 147 5 2067 509 226 10 10 chr1 194319929 194320032 -2875400 - MTEa LTR MaLR -228 151 49 5 2067 260 284 125 19 chr1 194320032 194320064 -2875368 - MLT2B3 LTR ERVL -349 146 23 5 2067 2280 96 19 3 chr1 194320549 194320863 -2874569 - ORR1A2 LTR MaLR -8 319 1 5 2067 324 0 0 0 chr1 194321780 194321816 -2873616 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 2067 2004 196 15 28 chr1 194322271 194322669 -2872763 - MTD LTR MaLR -14 405 13 5 2067 267 306 10 20 chr1 194322946 194323046 -2872386 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 5 2067 512 299 168 25 chr1 194323052 194323254 -2872178 - B4A SINE B4 -60 232 2 5 2067 410 242 279 53 chr1 194323920 194324221 -2871211 - ORR1D1 LTR MaLR -4 370 2 5 2067 197 275 85 32 chr1 194324946 194325040 -2870392 - L2c LINE L2 -5 3382 3284 5 2067 786 249 53 10 chr1 194325509 194325716 -2869716 + B3 SINE B2 1 216 0 5 2067 271 281 56 0 chr1 194325718 194325807 -2869625 - MER103 DNA DNA -15 151 58 5 2067 183 365 116 7 chr1 194328501 194328639 -2866793 + MIRc SINE MIR 115 267 -1 5 2067 210 37 0 0 chr1 194330016 194330043 -2865389 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 2067 277 325 0 0 chr1 194332520 194332603 -2862829 - ID4 SINE ID 0 83 1 5 2067 183 42 0 0 chr1 194333776 194333800 -2861632 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 2067 25 31 0 0 chr1 194333985 194334017 -2861415 + AT_rich Low_complexity Low_complexity 1 32 0 5 2067 493 224 85 124 chr1 194334097 194334250 -2861182 + B3A SINE B2 43 189 -6 5 2067 371 276 51 0 chr1 194334281 194334379 -2861053 - MTEa LTR MaLR 0 379 277 5 2067 303 281 25 66 chr1 194334364 194334486 -2860946 - MTEa LTR MaLR -258 121 5 5 2067 22 0 0 0 chr1 194336716 194336738 -2858694 + AT_rich Low_complexity Low_complexity 1 22 0 5 2067 731 238 70 27 chr1 194338252 194338438 -2856994 + B3 SINE B2 2 195 -21 5 2067 413 309 22 0 chr1 194338440 194338576 -2856856 + (CATA)n Simple_repeat Simple_repeat 1 139 0 5 2067 432 281 0 0 chr1 194338578 194338756 -2856676 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 2067 389 258 11 53 chr1 194338803 194338897 -2856535 + B3A SINE B2 1 90 -108 5 2067 518 296 148 14 chr1 194339613 194339822 -2855610 - MLT1D LTR MaLR -6 499 263 5 2067 383 247 71 20 chr1 194340565 194340664 -2854768 + PB1 SINE Alu 18 121 -6 5 2067 216 135 0 0 chr1 194340817 194340854 -2854578 + (TCC)n Simple_repeat Simple_repeat 2 38 0 5 2067 371 235 0 12 chr1 194341494 194341580 -2853852 + B4 SINE B4 1 85 -207 5 2067 1118 191 15 0 chr1 194341666 194341870 -2853562 + B3 SINE B2 3 209 -7 5 2067 1824 149 104 32 chr1 194342532 194342879 -2852553 - Lx5 LINE L1 -171 6879 6508 5 2067 645 220 73 86 chr1 194342843 194343077 -2852355 + Lx5 LINE L1 6820 7050 0 5 2067 306 73 0 0 chr1 194343083 194343124 -2852308 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 5 2067 228 297 200 17 chr1 194343195 194343208 -2852224 - B4 SINE B4 -60 232 91 5 2067 544 245 0 9 chr1 194343208 194343315 -2852117 - PB1D10 SINE Alu -6 111 6 5 2067 459 0 0 0 chr1 194345394 194345445 -2849987 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 2067 303 340 56 7 chr1 194345468 194345610 -2849822 - MER5A DNA MER1_type -22 167 19 5 2067 700 306 157 10 chr1 194346896 194347208 -2848224 - Tigger7 DNA MER2_type -95 2396 2127 5 2067 441 263 171 46 chr1 194347484 194347659 -2847773 + B4A SINE B4 2 198 -94 5 2067 315 0 0 0 chr1 194347689 194347724 -2847708 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 2067 207 182 0 0 chr1 194348281 194348325 -2847107 + (CAG)n Simple_repeat Simple_repeat 3 46 0 5 2067 354 222 0 47 chr1 194349367 194349452 -2845980 + L3 LINE CR1 4182 4262 -227 5 2067 1272 253 31 20 chr1 194350451 194350802 -2844630 + ORR1E LTR MaLR 5 359 0 5 2067 189 0 0 0 chr1 194350884 194350905 -2844527 + (CAGT)n Simple_repeat Simple_repeat 1 21 0 5 2067 283 323 0 21 chr1 194351718 194351813 -2843619 + C-rich Low_complexity Low_complexity 4 96 0 5 2067 665 216 104 6 chr1 194352560 194352723 -2842709 + MTE2b LTR MaLR 1 179 -200 5 2067 483 18 0 0 chr1 194352917 194352973 -2842459 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 2067 1431 200 75 21 chr1 194353030 194353182 -2842250 + ORR1D1 LTR MaLR 1 167 -207 5 2067 187 31 0 59 chr1 194353182 194353216 -2842216 + (CCCTAA)n Simple_repeat Simple_repeat 6 37 0 5 2067 1431 200 75 21 chr1 194353216 194353395 -2842037 + ORR1D1 LTR MaLR 168 350 -24 5 2067 330 269 105 151 chr1 194353367 194353453 -2841979 - B4A SINE B4 -82 210 144 5 2067 210 37 0 0 chr1 194353453 194353480 -2841952 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 2067 330 269 105 151 chr1 194353480 194353612 -2841820 - B4A SINE B4 -149 143 2 5 2067 1131 133 154 0 chr1 194353759 194353954 -2841478 - URR1B DNA MER1_type 0 225 1 5 2067 272 246 14 58 chr1 194354292 194354361 -2841071 - ID4_ SINE ID -9 74 9 5 2067 265 378 22 0 chr1 194354375 194354465 -2840967 - PB1D10 SINE Alu -9 108 17 5 2067 1128 63 28 0 chr1 194354654 194354797 -2840635 + B1_Mm SINE Alu 1 147 0 5 2067 241 233 108 14 chr1 194355960 194356034 -2839398 - LTR52 LTR ERVL -315 106 26 5 2067 985 67 79 36 chr1 194356575 194356715 -2838717 - B1_Mus1 SINE Alu -1 147 2 5 2067 2344 142 45 5 chr1 194357500 194357881 -2837551 + MTC LTR MaLR 26 421 0 5 2067 957 290 53 0 chr1 194357887 194358132 -2837300 + B4 SINE B4 33 290 -2 5 2067 293 187 13 0 chr1 194358136 194358211 -2837221 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 2067 225 0 0 0 chr1 194359390 194359415 -2836017 + (A)n Simple_repeat Simple_repeat 1 25 0 6 2067 1775 164 54 15 chr1 194359415 194359758 -2835674 - ORR1D1 LTR MaLR -29 345 1 6 2067 1799 196 43 34 chr1 194359823 194360274 -2835158 + RMER12 LTR ERVK 1 616 -788 6 2067 393 326 62 26 chr1 194360890 194361199 -2834233 + L1M5 LINE L1 4869 5188 -958 6 2067 1187 225 84 90 chr1 194361224 194361591 -2833841 + ORR1D2 LTR MaLR 1 365 -5 6 2067 307 208 0 0 chr1 194361673 194361726 -2833706 + B4A SINE B4 1 53 -239 6 2067 204 305 0 0 chr1 194363001 194363060 -2832372 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 6 2067 252 266 241 25 chr1 194363210 194363368 -2832064 + RMER15 LTR ERVL 294 485 -90 6 2067 476 219 8 0 chr1 194363379 194363502 -2831930 + (TG)n Simple_repeat Simple_repeat 2 125 0 6 2067 241 342 25 0 chr1 194363503 194363582 -2831850 + RMER15 LTR ERVL 492 572 -3 6 2067 263 350 43 7 chr1 194363694 194363832 -2831600 - L1M4 LINE L1 -467 5711 5569 6 2067 324 48 0 0 chr1 194363898 194363940 -2831492 + (T)n Simple_repeat Simple_repeat 1 42 0 6 2067 258 267 97 19 chr1 194364069 194364172 -2831260 - L1M4 LINE L1 -880 5266 5156 6 2067 353 208 28 0 chr1 194364180 194364252 -2831180 - PB1D7 SINE Alu -2 118 45 6 2067 582 245 129 5 chr1 194364260 194364469 -2830963 - L1M4 LINE L1 -983 5163 4929 6 2067 241 297 240 8 chr1 194364537 194364666 -2830766 - MTEa LTR MaLR -8 371 213 6 2067 404 242 63 0 chr1 194364727 194364822 -2830610 - MTEa LTR MaLR -278 101 1 6 2067 228 167 32 32 chr1 194367150 194367212 -2828220 + GA-rich Low_complexity Low_complexity 3 64 0 6 2067 408 40 0 0 chr1 194367217 194367267 -2828165 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 2067 26 0 0 0 chr1 194367995 194368021 -2827411 + AT_rich Low_complexity Low_complexity 1 26 0 6 2067 374 276 34 8 chr1 194368571 194368688 -2826744 - PB1D9 SINE Alu 0 120 1 6 2067 247 333 30 0 chr1 194368702 194368801 -2826631 - BC1_Mm scRNA scRNA -45 107 6 6 2067 204 216 0 0 chr1 194369279 194369330 -2826102 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 2067 829 284 118 31 chr1 194369880 194370229 -2825203 + MTE2a LTR MaLR 1 379 0 6 2067 1326 143 13 67 chr1 194370334 194370573 -2824859 - URR1A DNA MER1_type 0 226 1 6 2067 210 37 0 0 chr1 194371120 194371147 -2824285 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 2067 521 206 60 22 chr1 194371313 194371447 -2823985 + RMER15 LTR ERVL 422 560 -15 6 2067 186 43 0 0 chr1 194371944 194371967 -2823465 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 2067 652 291 88 78 chr1 194372680 194372974 -2822458 + RMER15 LTR ERVL 279 575 0 6 2067 934 232 125 115 chr1 194372975 194373350 -2822082 + MTE2b LTR MaLR 1 379 0 6 2067 281 211 222 52 chr1 194373712 194373847 -2821585 - MER46C DNA MER2_type -30 308 151 6 2067 242 313 51 101 chr1 194374563 194374780 -2820652 + MLT1J LTR MaLR 69 274 -238 6 2067 591 301 43 136 chr1 194374891 194375149 -2820283 - B4A SINE B4 0 292 59 6 2067 392 283 0 11 chr1 194375442 194375535 -2819897 - PB1D9 SINE Alu -9 111 20 6 2067 636 219 24 53 chr1 194376171 194376340 -2819092 + RSINE1 SINE B4 2 165 0 6 2067 2359 95 35 0 chr1 194377026 194377342 -2818090 + ORR1A2 LTR MaLR 1 327 0 6 2067 1673 216 93 8 chr1 194377344 194377722 -2817710 - MTD LTR MaLR -2 417 8 6 2067 1094 112 11 4 chr1 194378036 194378269 -2817163 + ORR1A4 LTR MaLR 1 321 -8 6 2067 1200 242 108 6 chr1 194378369 194378685 -2816747 + MTEb LTR MaLR 18 365 -14 6 2068 858 317 72 10 chr1 194380249 194380539 -2814893 - Tigger7 DNA MER2_type -2183 308 1 6 2068 1365 91 16 0 chr1 194380583 194380769 -2814663 - B2_Mm2 SINE B2 -6 189 1 6 2068 1073 229 24 0 chr1 194383575 194383785 -2811647 - B3 SINE B2 -1 215 1 6 2068 290 326 69 6 chr1 194383792 194383965 -2811467 + L1MA8 LINE L1 6106 6289 -2 6 2068 385 297 86 25 chr1 194383984 194384146 -2811286 + L1MB4 LINE L1 4170 4341 -1805 6 2068 661 274 83 49 chr1 194384172 194384437 -2810995 + B4 SINE B4 1 274 -18 6 2068 275 262 135 18 chr1 194384466 194384629 -2810803 + L1MB4 LINE L1 4340 4521 -1619 6 2068 266 246 0 0 chr1 194384632 194384689 -2810743 + L1MA8 LINE L1 6027 6083 -208 6 2068 617 279 78 68 chr1 194384808 194385300 -2810132 + L1MB4 LINE L1 4570 5056 -1084 6 2068 514 241 76 12 chr1 194385474 194385730 -2809702 + L1MB4 LINE L1 5103 5374 -772 6 2068 437 115 13 0 chr1 194385812 194385890 -2809542 + (GGA)n Simple_repeat Simple_repeat 3 81 0 6 2068 367 321 53 97 chr1 194385898 194386188 -2809244 + B4A SINE B4 2 280 -12 6 2068 270 0 0 0 chr1 194386218 194386248 -2809184 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 2068 312 225 75 0 chr1 194386401 194386481 -2808951 + L1MB4 LINE L1 5661 5746 -437 6 2068 272 341 133 43 chr1 194386524 194386758 -2808674 + B4 SINE B4 57 281 -11 6 2068 984 279 128 13 chr1 194386903 194387295 -2808137 + L1MB4 LINE L1 5743 6179 -1 6 2068 698 196 96 101 chr1 194387943 194388142 -2807290 + B3A SINE B2 1 198 0 6 2068 2350 158 54 10 chr1 194388236 194388626 -2806806 + MTC LTR MaLR 1 407 -14 6 2068 3202 184 19 10 chr1 194388629 194389215 -2806217 + MTC-int LTR MaLR 2 592 -666 6 2068 302 133 131 16 chr1 194389198 194389259 -2806173 + MTC-int LTR MaLR 1191 1258 0 6 2068 1672 161 203 14 chr1 194389259 194389613 -2805819 + MTC LTR MaLR 1 421 0 6 2068 371 357 42 39 chr1 194389627 194389887 -2805545 + L1M5 LINE L1 3804 4063 -2083 6 2068 3272 146 11 31 chr1 194390065 194390342 -2805090 + Lx3_Mus LINE L1 742 1002 -5632 6 2068 180 77 0 0 chr1 194390342 194390368 -2805064 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 2068 16728 157 14 74 chr1 194390368 194393448 -2801984 + Lx3_Mus LINE L1 1003 4089 -1788 6 2068 3579 23 0 0 chr1 194393448 194393844 -2801588 + MTA_Mm LTR MaLR 1 396 0 6 2068 16728 159 14 79 chr1 194393844 194394138 -2801294 + Lx3_Mus LINE L1 4090 4137 -1740 6 2068 7516 49 2 0 chr1 194394138 194395043 -2800389 + L1Md_F2 LINE L1 5664 6570 -12 6 2068 16728 159 14 79 chr1 194395043 194395481 -2799951 + Lx3_Mus LINE L1 4138 4585 -1292 6 2068 201 39 0 0 chr1 194395481 194395507 -2799925 + (T)n Simple_repeat Simple_repeat 1 26 0 6 2068 39724 51 12 4 chr1 194395529 194402000 -2793432 - L1Md_T LINE L1 0 6582 101 6 2068 3924 165 15 21 chr1 194401999 194402748 -2792684 + Lx3_Mus LINE L1 4568 5311 -566 6 2068 10331 74 10 3 chr1 194402752 194403015 -2792417 + Lx3_Mus LINE L1 5654 5919 -1090 6 2068 429 20 0 0 chr1 194403015 194403065 -2792367 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 6 2068 10331 74 10 3 chr1 194403065 194404148 -2791284 + Lx3_Mus LINE L1 5920 7008 -1 6 2068 9564 99 22 52 chr1 194404157 194405906 -2789526 + Lx2 LINE L1 5309 6997 0 6 2068 332 276 49 106 chr1 194405969 194406111 -2789321 - B4 SINE B4 -145 147 14 6 2068 259 228 0 0 chr1 194406122 194406179 -2789253 + MLT1A1 LTR MaLR 340 396 -12 6 2068 342 316 104 55 chr1 194406312 194406513 -2788919 + B4A SINE B4 7 217 -75 6 2068 219 69 0 0 chr1 194406585 194406614 -2788818 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 2068 360 0 0 0 chr1 194406614 194406653 -2788779 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 2068 201 74 0 0 chr1 194407045 194407072 -2788360 + (A)n Simple_repeat Simple_repeat 1 27 0 6 2068 2529 164 5 17 chr1 194408531 194408947 -2786485 - MTC LTR MaLR -8 413 3 6 2068 380 264 146 18 chr1 194409019 194409300 -2786132 + HAL1 LINE L1 1402 1718 -789 6 2068 759 264 109 34 chr1 194410107 194410373 -2785059 + B4A SINE B4 5 290 -2 6 2068 423 0 0 0 chr1 194410404 194410451 -2784981 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 2068 231 36 0 0 chr1 194410451 194410478 -2784954 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 2068 279 0 0 0 chr1 194410478 194410508 -2784924 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 2068 233 92 12 73 chr1 194410511 194410593 -2784839 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 2068 199 269 162 92 chr1 194412795 194412931 -2782501 + L2 LINE L2 2038 2208 -1211 6 2068 3131 73 25 0 chr1 194412931 194413327 -2782105 + MTB_Mm LTR MaLR 2 407 0 6 2068 199 269 162 92 chr1 194413327 194413505 -2781927 + L2 LINE L2 2209 2374 -1045 6 2068 1485 71 38 5 chr1 194413858 194414134 -2781298 + L1_Mus3 LINE L1 6408 6638 0 6 2068 734 278 9 28 chr1 194415853 194416068 -2779364 - B3 SINE B2 -4 212 2 6 2068 188 295 87 65 chr1 194416076 194416261 -2779171 - L2 LINE L2 -572 2847 2659 6 2068 626 204 226 6 chr1 194416499 194416676 -2778756 + B3 SINE B2 1 216 0 6 2068 1011 185 79 15 chr1 194417274 194417477 -2777955 - B3 SINE B2 0 216 1 6 2068 21 36 0 0 chr1 194419868 194419896 -2775536 + AT_rich Low_complexity Low_complexity 1 28 0 6 2068 211 306 0 0 chr1 194420089 194420138 -2775294 - ID4 SINE ID -13 70 22 6 2068 297 280 140 46 chr1 194420244 194420573 -2774859 + RMER10A LTR ERVL 65 424 -18 6 2068 724 298 82 19 chr1 194420878 194421145 -2774287 + B4 SINE B4 1 284 -8 6 2068 316 307 52 72 chr1 194421159 194421336 -2774096 + MER31A LTR ERV1 224 395 -71 6 2068 222 246 106 12 chr1 194421424 194421562 -2773870 - MIRb SINE MIR -45 163 15 6 2068 357 329 61 61 chr1 194421858 194422023 -2773409 + B4 SINE B4 128 292 0 6 2068 219 36 0 0 chr1 194422081 194422109 -2773323 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 2068 349 265 53 120 chr1 194423465 194423615 -2771817 - B1F SINE Alu -2 147 8 6 2068 242 316 23 92 chr1 194423540 194423627 -2771805 - B4A SINE B4 -131 161 81 6 2068 2797 219 70 30 chr1 194423701 194424464 -2770968 - RLTR40 LTR ERVK -24 793 1 6 2068 372 22 0 0 chr1 194424985 194425030 -2770402 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 2068 233 312 0 38 chr1 194425475 194425555 -2769877 + B4A SINE B4 81 157 -135 6 2068 351 198 2 28 chr1 194425488 194425576 -2769856 + PB1D7 SINE Alu 9 95 -54 6 2068 293 273 85 24 chr1 194426088 194426253 -2769179 - L1MB1 LINE L1 -146 6022 5848 6 2068 294 306 0 20 chr1 194426724 194426824 -2768608 + L1MA10 LINE L1 6171 6268 -66 6 2068 213 246 29 0 chr1 194427273 194427342 -2768090 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 6 2068 351 0 0 0 chr1 194427342 194427381 -2768051 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 2068 484 266 0 27 chr1 194427394 194427506 -2767926 - B1F SINE Alu -40 109 1 6 2068 256 309 0 125 chr1 194427424 194427520 -2767912 - MT2B2 LTR ERVL -350 234 151 6 2068 994 243 18 9 chr1 194428970 194429194 -2766238 - B4 SINE B4 -65 227 2 6 2068 538 193 100 8 chr1 194429716 194429775 -2765657 + B1_Mur2 SINE Alu 17 75 -74 6 2068 432 37 0 0 chr1 194429775 194429829 -2765603 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 2068 538 193 100 8 chr1 194429829 194429889 -2765543 + B1_Mur2 SINE Alu 76 146 -3 6 2068 756 247 169 28 chr1 194430197 194430451 -2764981 + B4 SINE B4 3 292 0 7 2068 229 217 17 0 chr1 194432850 194432910 -2762522 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 7 2068 242 322 0 53 chr1 194432942 194433037 -2762395 + B4 SINE B4 6 95 -197 7 2068 391 267 0 47 chr1 194433079 194433185 -2762247 - L1M3 LINE L1 -522 5646 5546 7 2068 266 335 11 72 chr1 194433748 194433928 -2761504 + YREP_Mm Unknown Unknown 125 293 -1519 7 2068 679 244 7 7 chr1 194433813 194433949 -2761483 - ID_B1 SINE B4 -5 219 84 7 2068 289 330 62 0 chr1 194434557 194434669 -2760763 - L2a LINE L2 0 3426 3308 7 2068 576 206 0 0 chr1 194434817 194434943 -2760489 + (CCCA)n Simple_repeat Simple_repeat 3 128 0 7 2068 269 309 66 7 chr1 194435169 194435306 -2760126 + L2 LINE L2 1919 2063 -1356 7 2068 1030 259 22 19 chr1 194436602 194436882 -2758550 + B4A SINE B4 7 286 -6 7 2068 248 307 53 0 chr1 194436922 194436997 -2758435 + MIRb SINE MIR 182 260 -8 7 2068 267 286 67 0 chr1 194437666 194437771 -2757661 + L1MA7 LINE L1 6136 6247 -44 7 2068 259 186 17 17 chr1 194437969 194438029 -2757403 + (CATGT)n Simple_repeat Simple_repeat 3 62 0 7 2068 459 0 0 0 chr1 194440129 194440180 -2755252 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 7 2068 1062 281 25 50 chr1 194440423 194440704 -2754728 + B4 SINE B4 19 292 0 7 2068 252 77 0 0 chr1 194441304 194441343 -2754089 + (A)n Simple_repeat Simple_repeat 1 39 0 7 2068 422 234 79 21 chr1 194441350 194441467 -2753965 + B4A SINE B4 139 263 -29 7 2068 336 24 0 0 chr1 194441467 194441508 -2753924 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 2068 422 234 79 21 chr1 194441508 194441530 -2753902 + B4A SINE B4 264 285 -7 7 2068 284 170 18 36 chr1 194442710 194442765 -2752667 - B4A SINE B4 -75 217 164 7 2068 955 283 16 65 chr1 194442920 194443226 -2752206 + B4 SINE B4 2 292 0 7 2068 183 80 0 0 chr1 194443270 194443295 -2752137 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 2068 294 73 0 0 chr1 194443297 194443338 -2752094 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 2068 216 0 0 0 chr1 194443882 194443906 -2751526 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 2068 430 256 8 107 chr1 194444061 194444099 -2751333 - MTEa LTR MaLR -4 375 345 7 2068 702 223 167 74 chr1 194444099 194444423 -2751009 + ORR1E LTR MaLR 4 357 -2 7 2068 471 220 0 25 chr1 194444423 194444515 -2750917 - MTEa LTR MaLR -35 344 258 7 2068 288 278 224 17 chr1 194445139 194445318 -2750114 + ORR1E LTR MaLR 39 254 -105 7 2068 1551 57 0 5 chr1 194446283 194446476 -2748956 - B2_Mm2 SINE B2 -2 193 2 7 2068 303 203 0 0 chr1 194446575 194446644 -2748788 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 2068 312 27 0 0 chr1 194448056 194448093 -2747339 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 2068 656 295 42 59 chr1 194448135 194448201 -2747231 - B4A SINE B4 -9 283 218 7 2068 270 0 0 0 chr1 194448201 194448231 -2747201 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 2068 656 295 42 59 chr1 194448231 194448452 -2746980 - B4A SINE B4 -75 217 1 7 2068 1752 101 0 19 chr1 194449117 194449379 -2746053 - L1Md_F2 LINE L1 -2 6580 6324 7 2068 813 259 6 12 chr1 194449410 194449574 -2745858 + RSINE1 SINE B4 3 165 0 7 2068 24 32 0 0 chr1 194449593 194449624 -2745808 + AT_rich Low_complexity Low_complexity 1 31 0 7 2068 460 169 0 0 chr1 194450089 194450160 -2745272 + B3 SINE B2 1 71 -145 7 2068 7278 41 2 2 chr1 194450185 194451059 -2744373 - L1Md_F2 LINE L1 0 6582 5709 7 2068 1870 45 5 0 chr1 194451057 194451277 -2744155 + L1Md_F2 LINE L1 5492 5712 -171 7 2068 310 127 11 0 chr1 194451788 194451843 -2743589 - ORR1D1 LTR MaLR 0 374 313 7 2068 2205 127 70 0 chr1 194451929 194452282 -2743150 + ORR1B1 LTR MaLR 1 378 -16 7 2068 5848 175 50 5 chr1 194452282 194453390 -2742042 + ORR1B1-int LTR MaLR 2 1159 -350 7 2068 2474 93 7 96 chr1 194453404 194453832 -2741600 + RLTR10 LTR ERVK 1 390 0 7 2068 874 116 117 30 chr1 194453860 194454082 -2741350 + IAPLTR2a LTR ERVK 212 475 0 7 2068 7878 45 24 16 chr1 194454084 194455066 -2740366 + RLTR10-int LTR ERVK 3 992 -995 7 2068 372 258 39 15 chr1 194455138 194455268 -2740164 + RLTR10-int LTR ERVK 1462 1594 -5987 7 2068 9020 20 0 1 chr1 194455350 194456346 -2739086 + RLTR10-int LTR ERVK 990 1984 -3 7 2068 2448 91 7 97 chr1 194456348 194456772 -2738660 + RLTR10 LTR ERVK 1 386 -4 7 2068 805 182 8 0 chr1 194456778 194456910 -2738522 + B1_Mm SINE Alu 15 147 0 7 2068 2256 191 28 7 chr1 194456879 194457306 -2738126 + ORR1B1-int LTR MaLR 1074 1509 0 7 2068 2415 122 91 0 chr1 194457306 194457667 -2737765 + ORR1B1 LTR MaLR 1 394 0 7 2068 1511 219 40 6 chr1 194457667 194457989 -2737443 - ORR1D1 LTR MaLR -41 333 1 7 2068 670 271 117 58 chr1 194458023 194458297 -2737135 - B4 SINE B4 0 292 3 7 2068 277 320 40 9 chr1 194458378 194458492 -2736940 - MIRb SINE MIR -100 168 45 7 2068 46 45 0 0 chr1 194458865 194458932 -2736500 + AT_rich Low_complexity Low_complexity 1 67 0 7 2068 1507 184 71 30 chr1 194459190 194459479 -2735953 + ORR1E LTR MaLR 10 315 -44 7 2068 3186 66 10 0 chr1 194459479 194459875 -2735557 - MTB LTR MaLR 0 400 1 7 2068 1507 184 71 30 chr1 194459875 194459921 -2735511 + ORR1E LTR MaLR 316 359 0 7 2068 288 300 149 26 chr1 194460076 194460230 -2735202 - MIR SINE MIR -54 208 36 7 2068 228 67 0 0 chr1 194460263 194460293 -2735139 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 7 2068 354 98 0 0 chr1 194460638 194460689 -2734743 + (CTCA)n Simple_repeat Simple_repeat 1 51 0 7 2068 355 288 43 57 chr1 194461233 194461373 -2734059 + MTEb LTR MaLR 204 341 -38 7 2068 237 330 34 43 chr1 194463048 194463165 -2732267 - MIRc SINE MIR -102 166 51 7 2068 22 35 0 0 chr1 194463690 194463719 -2731713 + AT_rich Low_complexity Low_complexity 1 29 0 7 2068 311 295 79 11 chr1 194464815 194464904 -2730528 + Lx8 LINE L1 6588 6682 -791 7 2068 600 266 73 18 chr1 194464917 194465135 -2730297 + Lx8 LINE L1 6861 7090 -383 7 2068 242 312 12 36 chr1 194465211 194465294 -2730138 - MTE2a LTR MaLR -340 81 1 7 2068 254 277 126 46 chr1 194465294 194465358 -2730074 + MER20 DNA MER1_type 147 217 -2 7 2068 205 167 0 36 chr1 194465615 194465671 -2729761 + GA-rich Low_complexity Low_complexity 2 55 0 7 2068 252 0 0 0 chr1 194466375 194466403 -2729029 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 2068 199 174 34 23 chr1 194466455 194466543 -2728889 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 2068 183 139 0 0 chr1 194466628 194466664 -2728768 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 7 2068 9043 67 15 5 chr1 194467850 194469687 -2725745 + L1VL4 LINE L1 228 2084 -1475 7 2068 369 0 0 0 chr1 194469802 194469843 -2725589 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 2068 635 278 67 17 chr1 194470216 194470454 -2724978 - Lx7 LINE L1 -318 7378 7129 7 2068 214 310 130 7 chr1 194470910 194471056 -2724376 - MIR3 SINE MIR 0 208 45 7 2068 233 268 26 90 chr1 194471831 194471909 -2723523 + PB1D10 SINE Alu 7 79 -38 7 2068 476 160 20 0 chr1 194471988 194472070 -2723362 + Lx7 LINE L1 6494 6581 -879 7 2068 337 299 111 29 chr1 194472955 194473127 -2722305 + Tigger9a DNA Tigger 542 727 -5 7 2068 259 250 15 15 chr1 194473205 194473270 -2722162 - MLT1N2 LTR MaLR -1 561 497 7 2068 1413 233 48 46 chr1 194474073 194474446 -2720986 + MTE2b LTR MaLR 1 374 -5 7 2068 326 258 45 0 chr1 194474689 194474778 -2720654 + MER3 DNA MER1_type 40 132 -77 7 2068 460 344 128 60 chr1 194474800 194475497 -2719935 - MER21B LTR ERV1 -49 814 44 7 2068 296 307 0 0 chr1 194475678 194475753 -2719679 + MER3 DNA MER1_type 135 209 0 7 2068 365 266 49 28 chr1 194475795 194475938 -2719494 - MIR3 SINE MIR -22 186 41 7 2068 247 343 52 40 chr1 194476129 194476302 -2719130 - MLT1N2 LTR MaLR -14 548 374 7 2068 225 0 0 0 chr1 194476998 194477023 -2718409 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 2068 5700 214 86 17 chr1 194477072 194478385 -2717047 + RMER12B LTR ERVK 1 1404 0 7 2068 189 350 38 0 chr1 194478600 194478680 -2716752 - MIRb SINE MIR -4 264 182 7 2068 271 209 29 29 chr1 194478720 194478789 -2716643 - MER2B DNA MER2_type -35 301 233 7 2068 579 232 27 16 chr1 194479535 194479659 -2715773 + PB1 SINE Alu 6 132 -15 7 2068 1090 273 103 31 chr1 194480086 194480475 -2714957 - MTD LTR MaLR -2 417 1 7 2068 1156 64 0 0 chr1 194480745 194480886 -2714546 + B1_Mus1 SINE Alu 1 141 -7 7 2068 22 35 0 0 chr1 194480905 194480934 -2714498 + AT_rich Low_complexity Low_complexity 1 29 0 7 2068 707 159 8 0 chr1 194481720 194481852 -2713580 + CT-rich Low_complexity Low_complexity 2 134 0 7 2068 1186 62 7 0 chr1 194482087 194482232 -2713200 + B1_Mus2 SINE Alu 2 147 0 7 2068 29 0 0 0 chr1 194484153 194484182 -2711250 + AT_rich Low_complexity Low_complexity 1 29 0 7 2068 975 205 59 20 chr1 194484225 194484356 -2711076 - B3 SINE B2 -4 212 81 7 2068 330 26 0 0 chr1 194484356 194484395 -2711037 + (G)n Simple_repeat Simple_repeat 1 39 0 7 2068 975 205 59 20 chr1 194484395 194484467 -2710965 - B3 SINE B2 -136 80 1 7 2068 1150 202 204 17 chr1 194484818 194485141 -2710291 + MTD LTR MaLR 1 419 0 7 2068 189 333 119 0 chr1 194485516 194485600 -2709832 + MER5A DNA MER1_type 74 167 -22 7 2068 232 287 198 27 chr1 194486476 194486587 -2708845 - RMER30 DNA MER1_type -23 179 50 7 2068 1087 218 0 14 chr1 194486735 194486944 -2708488 + B3 SINE B2 2 207 -9 7 2068 481 220 16 41 chr1 194487064 194487187 -2708245 - ORR1E LTR MaLR -239 120 1 7 2068 243 271 45 135 chr1 194487227 194487338 -2708094 - MIRc SINE MIR -122 146 46 7 2068 308 167 0 18 chr1 194488919 194488974 -2706458 - HAL1-3A_ME LINE L1 -830 2028 1975 7 2068 250 150 0 0 chr1 194488978 194489018 -2706414 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 2068 866 109 47 14 chr1 194489018 194489361 -2706071 + (TCTG)n Simple_repeat Simple_repeat 1 353 0 7 2068 571 185 11 11 chr1 194489404 194489584 -2705848 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 7 2068 604 182 8 16 chr1 194489586 194489839 -2705593 + (TCTCTG)n Simple_repeat Simple_repeat 1 250 0 7 2068 547 167 0 53 chr1 194489832 194490022 -2705410 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 7 2068 353 79 132 0 chr1 194490025 194490101 -2705331 + (CCTG)n Simple_repeat Simple_repeat 2 87 0 7 2068 562 200 0 22 chr1 194490106 194490290 -2705142 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 7 2068 615 197 0 0 chr1 194490271 194490449 -2704983 + CT-rich Low_complexity Low_complexity 2 179 0 7 2068 680 194 0 48 chr1 194490460 194490649 -2704783 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 7 2068 673 146 20 58 chr1 194490650 194490919 -2704513 + (TCTCTG)n Simple_repeat Simple_repeat 1 258 0 8 2068 829 27 99 27 chr1 194490919 194491076 -2704356 + (TCTG)n Simple_repeat Simple_repeat 1 170 -555 8 2068 191 196 17 43 chr1 194491076 194491085 -2704347 + (TCTCTG)n Simple_repeat Simple_repeat 2 10 0 8 2068 829 27 99 27 chr1 194491085 194491595 -2703837 + (TCTG)n Simple_repeat Simple_repeat 171 725 0 8 2068 191 196 17 43 chr1 194491595 194491626 -2703806 + (TCTCTG)n Simple_repeat Simple_repeat 3 31 0 8 2068 503 167 0 39 chr1 194491668 194491751 -2703681 + polypyrimidine Low_complexity Low_complexity 93 175 0 8 2068 1230 80 0 0 chr1 194491751 194492290 -2703142 + (TC)n Simple_repeat Simple_repeat 1 539 0 8 2068 503 167 0 39 chr1 194492290 194492382 -2703050 + polypyrimidine Low_complexity Low_complexity 2 92 0 8 2068 851 209 0 0 chr1 194492422 194492570 -2702862 - RSINE1 SINE B4 -15 150 3 8 2068 356 327 114 24 chr1 194494134 194494388 -2701044 + L2 LINE L2 2399 2675 -744 8 2068 450 0 0 0 chr1 194494418 194494468 -2700964 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 8 2068 1249 34 7 0 chr1 194494469 194494615 -2700817 - B1_Mm SINE Alu 0 147 1 8 2068 273 320 138 8 chr1 194494618 194494741 -2700691 + L2 LINE L2 2770 2908 -511 8 2068 775 322 71 17 chr1 194495178 194495472 -2699960 + MLT2D LTR ERVL 12 321 -93 8 2068 945 132 0 4 chr1 194495651 194496191 -2699241 + (TG)n Simple_repeat Simple_repeat 1 538 0 8 2068 891 134 0 0 chr1 194496212 194496391 -2699041 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 2068 929 127 0 11 chr1 194496413 194497563 -2697869 + (TG)n Simple_repeat Simple_repeat 1 1137 0 8 2068 1044 133 153 0 chr1 194498352 194498548 -2696884 + URR1A DNA MER1_type 1 226 0 8 2068 891 202 59 55 chr1 194499735 194499955 -2695477 + RMER5 LTR ERV1 1 221 -313 8 2068 1850 146 41 0 chr1 194500000 194500295 -2695137 + RMER5 LTR ERV1 215 521 -13 1 2068 292 317 134 18 chr1 194500793 194500957 -2694475 - L2a LINE L2 -2 3424 3191 2 2068 1407 231 149 46 chr1 194500970 194501254 -2694178 + RMER5 LTR ERV1 10 329 -205 3 2068 4316 42 77 0 chr1 194501254 194501774 -2693658 + LTRIS2 LTR ERV1 5 564 0 4 2068 1407 231 149 46 chr1 194501774 194501965 -2693467 + RMER5 LTR ERV1 330 534 0 3 2068 303 365 97 48 chr1 194502169 194502684 -2692748 - MER34 LTR ERV1 -1 541 2 5 2068 591 85 0 0 chr1 194503735 194503817 -2691615 + (TC)n Simple_repeat Simple_repeat 2 83 0 6 2068 402 69 0 0 chr1 194503817 194503875 -2691557 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 2068 1371 240 52 33 chr1 194504358 194504720 -2690712 - MTE2b LTR MaLR -9 370 2 8 2068 3007 89 14 0 chr1 194504955 194505370 -2690062 + BGLII LTR ERVK 1 421 0 9 2068 318 309 109 53 chr1 194505967 194506480 -2688952 + L1MC4 LINE L1 6903 7444 -598 1 2068 466 255 51 51 chr1 194506489 194506646 -2688786 + RMER15 LTR ERVL 4 160 -415 1 2068 559 337 21 16 chr1 194506647 194506840 -2688592 + RMER15 LTR ERVL 276 469 -106 1 2068 465 320 15 22 chr1 194506830 194506983 -2688449 - B3A SINE B2 -45 150 2 1 2068 351 246 129 48 chr1 194507260 194507469 -2687963 + RLTR21 LTR ERVK 1080 1305 -267 1 2068 279 0 0 0 chr1 194507473 194507504 -2687928 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 2068 1146 250 182 22 chr1 194508079 194508480 -2686952 + RMER5 LTR ERV1 59 523 -11 1 2068 350 280 103 0 chr1 194509497 194509604 -2685828 - RSINE1 SINE B4 -33 132 15 1 2068 351 305 36 83 chr1 194509872 194510040 -2685392 + RMER15 LTR ERVL 405 564 -11 1 2068 221 171 0 0 chr1 194510055 194510090 -2685342 - RSINE1 SINE B4 -129 36 2 1 2068 261 256 123 8 chr1 194510433 194510555 -2684877 + L2a LINE L2 3019 3154 -272 1 2068 344 312 141 0 chr1 194510558 194510686 -2684746 - MER82 DNA MER2_type -1 652 507 2 258 621 264 76 92 chr1 194510719 194510969 -2684463 - MER82 DNA MER2_type -255 398 153 2 2069 610 231 60 75 chr1 194511329 194511530 -2683902 + B3A SINE B2 1 198 0 2 2069 626 293 128 21 chr1 194513220 194513553 -2681879 - ORR1E LTR MaLR -8 362 11 2 2069 3376 52 2 12 chr1 194513699 194514109 -2681323 - MTB_Mm LTR MaLR 0 407 2 2 2069 493 281 191 70 chr1 194516730 194516986 -2678446 + B4A SINE B4 5 291 -1 2 2069 211 191 0 31 chr1 194516989 194517054 -2678378 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 2069 236 200 0 98 chr1 194517309 194517370 -2678062 + PB1D10 SINE Alu 63 117 0 2 2069 473 259 66 108 chr1 194517379 194517591 -2677841 + B3 SINE B2 2 204 -12 2 2069 527 264 18 59 chr1 194517884 194518105 -2677327 + B3 SINE B2 5 216 0 2 2069 21 36 0 0 chr1 194518105 194518133 -2677299 + AT_rich Low_complexity Low_complexity 1 28 0 2 2069 1580 245 42 6 chr1 194519385 194519742 -2675690 + MTE2b LTR MaLR 10 379 0 3 2069 362 179 64 0 chr1 194520233 194520311 -2675121 + ORR1D2 LTR MaLR 32 114 -256 3 2069 537 254 45 40 chr1 194520543 194520719 -2674713 + RMER5 LTR ERV1 214 390 -144 3 2069 180 182 0 0 chr1 194521206 194521250 -2674182 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 2069 353 211 8 0 chr1 194521285 194521413 -2674019 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 2069 354 23 0 0 chr1 194521440 194521483 -2673949 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 2069 494 210 151 15 chr1 194521569 194521701 -2673731 - RSINE1 SINE B4 0 165 1 3 2069 932 78 0 86 chr1 194521721 194521861 -2673571 - B1_Mus2 SINE Alu -19 128 1 3 2069 4216 174 114 50 chr1 194521897 194522001 -2673431 - RMER1B Other Other -1 1065 962 3 2069 3100 82 10 2 chr1 194522001 194522419 -2673013 - BGLII LTR ERVK 0 421 1 3 2069 4216 174 114 50 chr1 194522419 194523312 -2672120 - RMER1B Other Other -105 961 4 3 2069 245 314 55 143 chr1 194523707 194523728 -2671704 + B4 SINE B4 75 178 -114 3 2069 656 250 0 46 chr1 194523728 194523879 -2671553 + B1_Mur1 SINE Alu 5 148 -1 4 2069 509 274 123 86 chr1 194523886 194524106 -2671326 + B4A SINE B4 1 228 -64 4 2069 200 265 96 0 chr1 194524779 194524862 -2670570 + L2b LINE L2 3049 3139 -236 4 2069 200 255 59 0 chr1 194525042 194525093 -2670339 - MIR SINE MIR -16 246 193 4 2069 302 258 108 0 chr1 194525182 194525275 -2670157 + MLT1G3 LTR MaLR 1 103 -492 4 2069 314 279 113 16 chr1 194525299 194525423 -2670009 + ORR1E LTR MaLR 1 136 -223 4 2069 428 328 126 81 chr1 194526124 194526433 -2668999 + MLT1G3 LTR MaLR 227 549 -30 4 2069 207 182 0 0 chr1 194527346 194527379 -2668053 + polypyrimidine Low_complexity Low_complexity 4 36 0 4 2069 316 250 230 31 chr1 194527379 194527540 -2667892 - HAL1-3A_ME LINE L1 -658 2200 2008 4 2069 522 271 22 71 chr1 194527702 194527885 -2667547 - B4A SINE B4 -117 175 2 4 2069 1160 211 208 14 chr1 194528015 194528366 -2667066 + MTD LTR MaLR 1 419 0 4 2069 874 273 87 87 chr1 194528586 194528943 -2666489 + ORR1E LTR MaLR 1 357 -2 5 2069 28 0 0 0 chr1 194529327 194529355 -2666077 + AT_rich Low_complexity Low_complexity 1 28 0 5 2069 382 267 50 106 chr1 194529849 194530029 -2665403 + L1MA5A LINE L1 4144 4313 -1830 5 2069 1832 285 102 50 chr1 194530135 194531647 -2663785 + L1MA5A LINE L1 4349 5942 -355 5 2069 524 336 76 0 chr1 194532040 194532251 -2663181 + Tigger7 DNA MER2_type 75 301 -2190 5 2069 525 224 88 216 chr1 194532256 194532458 -2662974 + Tigger7 DNA MER2_type 2131 2323 -168 5 2069 694 314 74 46 chr1 194532458 194532742 -2662690 - B4A SINE B4 0 292 1 5 2069 525 224 88 216 chr1 194532742 194532937 -2662495 + Tigger7 DNA MER2_type 2324 2477 -14 5 2069 215 309 0 0 chr1 194533479 194533534 -2661898 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 2069 541 276 86 6 chr1 194533603 194533778 -2661654 + B3A SINE B2 4 192 -6 5 2069 842 179 7 0 chr1 194534958 194535098 -2660334 + B1_Mur3 SINE Alu 2 142 -7 5 2069 549 180 0 0 chr1 194535138 194535227 -2660205 + B3A SINE B2 2 90 -108 5 2069 417 39 0 0 chr1 194535289 194535340 -2660092 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 2069 1368 251 123 10 chr1 194535407 194535797 -2659635 + Lx8 LINE L1 6829 7262 -211 6 2069 254 267 0 0 chr1 194535798 194535858 -2659574 + RMER15 LTR ERVL 403 462 -113 6 2069 3322 48 5 12 chr1 194535973 194536376 -2659056 - MTB LTR MaLR 0 400 1 6 2069 22 0 0 0 chr1 194536382 194536404 -2659028 + AT_rich Low_complexity Low_complexity 1 22 0 6 2069 416 135 0 13 chr1 194537970 194538045 -2657387 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 2069 361 280 6 6 chr1 194538047 194538216 -2657216 + (CA)n Simple_repeat Simple_repeat 1 169 0 6 2069 326 222 11 0 chr1 194538419 194538509 -2656923 + CT-rich Low_complexity Low_complexity 2 92 0 6 2069 857 204 25 0 chr1 194538741 194538903 -2656529 - B3 SINE B2 -1 215 50 6 2069 546 16 0 0 chr1 194539032 194539095 -2656337 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 2069 668 267 61 52 chr1 194539176 194539389 -2656043 - B4A SINE B4 -76 216 2 6 2069 233 315 136 81 chr1 194539442 194539825 -2655607 - L2b LINE L2 -17 3358 2955 7 2069 360 0 0 0 chr1 194540452 194540492 -2654940 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 2069 456 59 115 23 chr1 194540533 194540620 -2654812 + L1Md_F3 LINE L1 6490 6584 0 7 2069 1126 226 27 11 chr1 194540662 194540922 -2654510 + L1_Rod LINE L1 5501 5764 -83 7 2069 494 175 169 31 chr1 194541323 194541453 -2653979 + B1_Mur1 SINE Alu 2 149 0 7 2069 1092 89 0 0 chr1 194542095 194542275 -2653157 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 2069 246 339 173 11 chr1 194542698 194542889 -2652543 - MIRb SINE MIR -13 255 34 7 2069 1364 51 0 6 chr1 194543826 194544004 -2651428 + (GGGAGA)n Simple_repeat Simple_repeat 4 180 0 7 2069 692 166 0 7 chr1 194544004 194544133 -2651299 + GA-rich Low_complexity Low_complexity 12 140 0 7 2069 240 313 81 46 chr1 194544168 194544255 -2651177 + MIR SINE MIR 57 146 -62 7 2069 1508 212 121 28 chr1 194544524 194544888 -2650544 - MTD LTR MaLR 0 419 22 8 2069 180 0 0 0 chr1 194544888 194544908 -2650524 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 2069 2439 71 6 61 chr1 194545092 194545438 -2649994 + ORR1A2 LTR MaLR 1 327 0 8 2069 714 302 97 8 chr1 194546031 194546298 -2649134 + B4 SINE B4 2 292 0 8 2069 1130 159 99 5 chr1 194546991 194547193 -2648239 - URR1A DNA MER1_type -1 225 5 8 2069 549 0 0 0 chr1 194547367 194547428 -2648004 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 2069 821 270 90 28 chr1 194547443 194547490 -2647942 - B4A SINE B4 -20 272 226 8 2069 225 94 0 0 chr1 194547490 194547522 -2647910 + (ACTG)n Simple_repeat Simple_repeat 4 35 0 8 2069 821 270 90 28 chr1 194547522 194547729 -2647703 - B4A SINE B4 -67 225 3 8 2069 310 206 14 14 chr1 194547827 194547896 -2647536 - ID4_ SINE ID -14 69 1 8 2069 1614 48 0 10 chr1 194548203 194548412 -2647020 - L1Md_F2 LINE L1 -2 6580 6374 8 2069 335 73 0 0 chr1 194548412 194548453 -2646979 + L1Md_F2 LINE L1 6341 6381 -201 8 2069 268 301 11 98 chr1 194548908 194549000 -2646432 - RSINE1 SINE B4 0 165 82 9 2069 1132 68 0 27 chr1 194549018 194549168 -2646264 - B1_Mus1 SINE Alu 0 148 3 9 2069 261 239 197 0 chr1 194549693 194549764 -2645668 - MER5A DNA MER1_type -96 93 9 9 2069 350 301 32 19 chr1 194550134 194550290 -2645142 + (TG)n Simple_repeat Simple_repeat 1 158 0 9 2069 343 284 11 49 chr1 194550308 194550493 -2644939 + (TATG)n Simple_repeat Simple_repeat 2 179 0 9 2069 1264 232 55 7 chr1 194551140 194551448 -2643984 + RCHARR1 DNA MER1_type 625 947 -27 9 2069 627 180 47 0 chr1 194551450 194551578 -2643854 - RCHARR1 DNA MER1_type -373 601 468 9 2069 366 323 12 48 chr1 194551580 194551746 -2643686 + RSINE1 SINE B4 5 164 -1 9 2069 447 167 0 0 chr1 194551757 194551847 -2643585 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 2069 1211 236 178 12 chr1 194551864 194552275 -2643157 - RCHARR1 DNA MER1_type -490 484 6 9 2069 230 270 16 0 chr1 194552731 194552794 -2642638 + tRNA-Ala-GCA tRNA tRNA 5 68 -7 9 2069 225 0 0 0 chr1 194552978 194553003 -2642429 + (A)n Simple_repeat Simple_repeat 1 25 0 1 2069 522 253 19 39 chr1 194554080 194554236 -2641196 - RMER30 DNA MER1_type -43 159 7 1 2069 607 253 115 61 chr1 194554469 194554730 -2640702 + B4 SINE B4 2 276 -16 1 2069 900 9 0 80 chr1 194554784 194555008 -2640424 + (CA)n Simple_repeat Simple_repeat 1 206 0 1 2069 1281 155 56 137 chr1 194555057 194555379 -2640053 + RMER17A2 LTR ERVK 1 296 -610 1 2069 324 186 71 142 chr1 194555376 194555489 -2639943 + RSINE1 SINE B4 18 122 -43 1 2069 533 42 0 14 chr1 194555489 194555562 -2639870 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 2069 726 140 299 0 chr1 194555683 194555847 -2639585 - B3 SINE B2 0 216 4 1 2069 296 350 42 14 chr1 194555911 194556053 -2639379 + MIRb SINE MIR 77 222 -46 1 2069 635 294 65 0 chr1 194556087 194556271 -2639161 + ID_B1 SINE B4 27 222 -2 1 2069 391 266 55 0 chr1 194556389 194556498 -2638934 + PB1D10 SINE Alu 1 115 -2 1 2069 231 200 0 0 chr1 194556576 194556626 -2638806 + (CAGA)n Simple_repeat Simple_repeat 4 53 0 1 2069 822 220 81 0 chr1 194557933 194558106 -2637326 - B3 SINE B2 0 216 30 1 2069 252 0 0 0 chr1 194558120 194558148 -2637284 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 2069 237 57 0 0 chr1 194558148 194558174 -2637258 - B1_Mm SINE Alu -9 138 113 1 2069 322 143 0 97 chr1 194558157 194558219 -2637213 - B3A SINE B2 -142 56 1 1 2069 1505 158 79 8 chr1 194558246 194558513 -2636919 - MTC LTR MaLR 0 421 136 1 2069 507 118 0 0 chr1 194558521 194558606 -2636826 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 2069 279 0 0 0 chr1 194558874 194558905 -2636527 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 2069 644 242 12 100 chr1 194558923 194559093 -2636339 - RSINE1 SINE B4 -8 157 3 1 2069 775 224 137 59 chr1 194559094 194559216 -2636216 - B4 SINE B4 -65 227 85 1 2069 216 0 0 0 chr1 194559216 194559240 -2636192 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 2069 775 224 137 59 chr1 194559240 194559321 -2636111 - B4 SINE B4 -208 84 8 1 2069 409 320 65 137 chr1 194559336 194559810 -2635622 - L1MD2 LINE L1 0 6359 5920 1 2069 590 320 65 19 chr1 194559849 194560221 -2635211 - L1MD2 LINE L1 -554 5805 5417 1 2069 783 169 0 0 chr1 194560701 194560849 -2634583 + (TGGA)n Simple_repeat Simple_repeat 4 151 0 1 2069 225 256 54 22 chr1 194560865 194560957 -2634475 + (TGGA)n Simple_repeat Simple_repeat 3 97 0 1 2069 256 288 15 0 chr1 194562398 194562464 -2632968 + G-rich Low_complexity Low_complexity 3 69 0 1 2069 212 344 62 49 chr1 194562736 194562962 -2632470 + MamSINE1 SINE tRNA 13 241 -49 1 2069 229 211 26 78 chr1 194563371 194563448 -2631984 - ID4_ SINE ID -8 75 3 1 2069 416 248 195 0 chr1 194563682 194563829 -2631603 + MER2 DNA MER2_type 100 275 -70 1 2069 370 301 130 14 chr1 194563829 194563967 -2631465 + RSINE1 SINE B4 2 155 -10 1 2069 204 208 0 0 chr1 194563990 194564038 -2631394 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 1 2069 249 169 0 0 chr1 194564041 194564100 -2631332 + GA-rich Low_complexity Low_complexity 2 60 0 1 2069 240 292 10 10 chr1 194564687 194564784 -2630648 - L1M5 LINE L1 -759 5481 5385 1 2069 873 204 78 5 chr1 194564863 194565055 -2630377 + B3 SINE B2 1 206 -10 1 2069 932 192 117 5 chr1 194565098 194565286 -2630146 - B3 SINE B2 -6 210 2 1 2069 942 205 75 19 chr1 194565623 194565837 -2629595 - URR1A DNA MER1_type 0 226 1 1 2069 834 248 55 37 chr1 194566419 194566691 -2628741 - B4 SINE B4 -14 278 2 1 2069 2077 122 136 0 chr1 194566823 194566869 -2628563 - MTC LTR MaLR -8 413 368 1 2069 533 15 15 0 chr1 194566869 194566935 -2628497 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 2069 2077 122 136 0 chr1 194566935 194567241 -2628191 - MTC LTR MaLR -54 367 14 1 2069 564 197 8 4 chr1 194567241 194567361 -2628071 - B3 SINE B2 -72 123 2 1 2069 229 309 60 52 chr1 194568029 194568145 -2627287 - MIRm SINE MIR -84 192 76 1 2069 260 194 59 15 chr1 194568760 194568771 -2626661 + MTEb LTR MaLR 306 316 -63 1 2069 1988 143 129 0 chr1 194568771 194569120 -2626312 + ORR1B1 LTR MaLR 1 394 0 1 2069 338 146 1 0 chr1 194569120 194569176 -2626256 + MTEb LTR MaLR 317 376 -3 1 2069 505 320 68 0 chr1 194569215 194569434 -2625998 + Lx9 LINE L1 7232 7465 -179 1 2069 252 189 0 0 chr1 194569437 194569511 -2625921 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 2069 421 189 0 67 chr1 194569532 194569725 -2625707 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 2069 255 217 14 0 chr1 194569742 194569811 -2625621 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 2069 268 184 9 35 chr1 194569822 194569935 -2625497 + (CA)n Simple_repeat Simple_repeat 2 111 0 1 2069 549 273 14 14 chr1 194570295 194570436 -2624996 + ID_B1 SINE B4 82 222 -2 1 2069 546 156 0 40 chr1 194570685 194570785 -2624647 + ID_B1 SINE B4 129 224 0 1 2069 247 157 59 0 chr1 194570741 194570792 -2624640 + FAM SINE Alu 262 315 0 1 2069 199 50 49 24 chr1 194570794 194570835 -2624597 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 1 2069 485 277 6 57 chr1 194571025 194571182 -2624250 + B1F SINE Alu 1 149 0 1 2069 769 61 17 26 chr1 194571764 194571881 -2623551 + U5 snRNA snRNA 1 116 0 1 2069 363 75 57 0 chr1 194573030 194573083 -2622349 - HAL1-3A_ME LINE L1 -827 2031 1976 1 2069 654 194 0 0 chr1 194573084 194573365 -2622067 + (TG)n Simple_repeat Simple_repeat 1 281 0 1 2069 252 232 0 0 chr1 194573378 194573477 -2621955 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 2069 477 219 0 0 chr1 194573496 194573656 -2621776 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 2069 772 256 31 0 chr1 194573656 194573816 -2621616 - RSINE1 SINE B4 0 165 1 1 2069 420 256 11 0 chr1 194573818 194573908 -2621524 - B4 SINE B4 -200 92 2 1 2069 1811 154 117 12 chr1 194574430 194574572 -2620860 + ORR1C1 LTR MaLR 1 162 -216 1 2069 363 23 0 0 chr1 194574572 194574616 -2620816 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 1 2069 1811 154 117 12 chr1 194574616 194574815 -2620617 + ORR1C1 LTR MaLR 163 377 -1 1 2069 362 224 73 11 chr1 194575911 194576035 -2619397 - B1F SINE Alu -4 145 10 1 2069 879 150 0 27 chr1 194576724 194576909 -2618523 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 2069 1653 31 0 5 chr1 194577073 194577267 -2618165 + L1Md_F2 LINE L1 5394 5586 -297 1 2069 8097 56 3 14 chr1 194577267 194578274 -2617158 + L1Md_F2 LINE L1 5587 6582 0 1 2069 35 0 0 0 chr1 194578303 194578338 -2617094 + AT_rich Low_complexity Low_complexity 1 35 0 1 2069 826 255 70 70 chr1 194578603 194578860 -2616572 + B4A SINE B4 1 257 -35 1 2069 381 43 0 0 chr1 194580461 194580508 -2614924 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 2069 864 256 0 12 chr1 194580516 194580682 -2614750 - B4 SINE B4 -3 289 126 1 2069 180 77 0 0 chr1 194580784 194580810 -2614622 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 2069 348 167 0 43 chr1 194580822 194580891 -2614541 + PB1D10 SINE Alu 52 117 0 1 2069 543 295 53 18 chr1 194580976 194581145 -2614287 + ID_B1 SINE B4 50 224 0 1 2069 198 0 0 0 chr1 194581166 194581188 -2614244 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 2069 656 273 11 0 chr1 194581195 194581371 -2614061 - B3A SINE B2 -18 180 3 1 2069 315 337 149 29 chr1 194581480 194581688 -2613744 + L1M5 LINE L1 3042 3274 -2872 1 2069 259 315 0 14 chr1 194582182 194582256 -2613176 + PB1D9 SINE Alu 48 120 0 1 2069 545 286 74 18 chr1 194582346 194582563 -2612869 + L1MC1 LINE L1 5575 5803 -530 1 2069 711 267 22 6 chr1 194582584 194582765 -2612667 + ID_B1 SINE B4 37 220 -4 1 2069 747 289 65 24 chr1 194582781 194583121 -2612311 + L1MC1 LINE L1 5814 6167 -166 1 2069 1294 133 92 0 chr1 194584179 194584374 -2611058 + B3 SINE B2 1 213 -3 1 2069 402 21 0 0 chr1 194584640 194584687 -2610745 + (TTA)n Simple_repeat Simple_repeat 3 49 0 1 2069 438 264 107 40 chr1 194584688 194584838 -2610594 - RSINE1 SINE B4 -3 162 3 1 2069 641 232 7 53 chr1 194584879 194585029 -2610403 + B1F SINE Alu 7 149 0 1 2069 297 241 24 37 chr1 194585034 194585116 -2610316 + ID4_ SINE ID 1 81 -2 1 2069 331 238 133 1 chr1 194585137 194585244 -2610188 + PB1 SINE Alu 1 116 -1 1 2069 299 91 0 0 chr1 194585488 194585532 -2609900 + B2_Mm2 SINE B2 2 45 -150 1 2069 222 37 0 0 chr1 194585589 194585616 -2609816 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1 2069 405 0 0 0 chr1 194585616 194585661 -2609771 + (CAG)n Simple_repeat Simple_repeat 2 46 0 1 2069 231 195 0 0 chr1 194586141 194586182 -2609250 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 2069 624 165 0 0 chr1 194586408 194586523 -2608909 + CT-rich Low_complexity Low_complexity 3 117 0 1 2069 7007 161 37 7 chr1 194586813 194588284 -2607148 + Lx5 LINE L1 5337 6854 -196 1 2069 526 250 42 0 chr1 194589201 194589321 -2606111 + MTE2b LTR MaLR 251 375 -4 1 2069 1020 279 98 85 chr1 194589651 194590179 -2605253 - Tigger7 DNA MER2_type -1912 579 45 1 2069 360 0 0 0 chr1 194590521 194590561 -2604871 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 2069 863 239 181 4 chr1 194590595 194590822 -2604610 - B4A SINE B4 -18 274 8 1 2069 350 292 31 60 chr1 194590917 194591096 -2604336 - MIR3 SINE MIR -86 190 14 1 2069 490 263 15 0 chr1 194591964 194592097 -2603335 - B3A SINE B2 -63 135 1 1 2069 550 292 38 46 chr1 194593910 194594147 -2601285 + RMER13A LTR ERVK 2 236 -624 1 2069 540 189 17 43 chr1 194594184 194594300 -2601132 - B1_Mur1 SINE Alu -28 121 9 1 2069 522 260 159 15 chr1 194594426 194594621 -2600811 - ID_B1 SINE B4 -1 223 1 1 2069 1233 41 7 0 chr1 194594639 194594786 -2600646 + B1_Mus1 SINE Alu 1 148 0 1 2069 312 158 202 33 chr1 194595058 194595220 -2600212 - L1M3 LINE L1 -2572 3574 3375 1 2069 1193 206 136 19 chr1 194595310 194595627 -2599805 + ORR1E LTR MaLR 2 355 -4 1 2069 235 161 18 18 chr1 194595637 194595694 -2599738 + CT-rich Low_complexity Low_complexity 3 59 0 1 2069 241 163 20 0 chr1 194595842 194595891 -2599541 - ID_B1 SINE B4 -1 223 174 1 2069 213 177 69 92 chr1 194595891 194595929 -2599503 - PB1D10 SINE Alu 0 117 33 1 2069 216 0 0 0 chr1 194596720 194596744 -2598688 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 2069 23 33 0 0 chr1 194597042 194597072 -2598360 + GC_rich Low_complexity Low_complexity 1 30 0 1 2069 717 269 58 61 chr1 194597701 194597994 -2597438 + B4A SINE B4 1 292 0 2 2069 183 139 130 65 chr1 194598182 194598228 -2597204 - L3 LINE CR1 -282 4207 4159 2 2069 226 165 103 87 chr1 194598288 194598378 -2597054 + PB1D7 SINE Alu 18 112 -8 2 2069 3171 200 123 9 chr1 194598595 194599328 -2596104 + RLTR40 LTR ERVK 1 816 -1 2 2069 251 50 50 0 chr1 194599369 194599409 -2596023 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2 2069 304 265 128 0 chr1 194599470 194599587 -2595845 + B1F SINE Alu 10 141 -8 2 2069 1025 117 21 0 chr1 194599829 194599974 -2595458 + B1_Mus1 SINE Alu 1 148 0 2 2069 672 165 287 0 chr1 194599982 194600146 -2595286 + B3 SINE B2 2 212 -4 2 2069 510 200 81 7 chr1 194600871 194601007 -2594425 - L1MA9 LINE L1 -2 6310 6165 2 2069 371 83 17 0 chr1 194601007 194601067 -2594365 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 2069 1382 88 10 10 chr1 194601083 194601277 -2594155 + B2_Mm2 SINE B2 1 194 -1 2 2069 466 217 0 9 chr1 194601285 194601526 -2593906 + (TG)n Simple_repeat Simple_repeat 1 238 0 2 2069 378 57 0 36 chr1 194601535 194601590 -2593842 - HAL1-3A_ME LINE L1 -835 2023 1971 2 2069 287 330 0 33 chr1 194601700 194601791 -2593641 - PB1D7 SINE Alu -20 100 13 2 2069 405 0 0 0 chr1 194602893 194602938 -2592494 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 2069 333 0 0 0 chr1 194602938 194602974 -2592458 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 2069 1135 186 28 5 chr1 194603040 194603251 -2592181 - B3 SINE B2 0 216 1 2 2069 342 311 76 76 chr1 194603341 194603616 -2591816 - B4 SINE B4 -17 275 1 2 2069 2650 146 2 24 chr1 194603745 194604165 -2591267 - MTC LTR MaLR -8 413 3 2 2069 849 168 249 0 chr1 194605801 194605974 -2589458 + B3 SINE B2 1 216 0 2 2069 21 36 0 0 chr1 194605974 194606002 -2589430 + AT_rich Low_complexity Low_complexity 1 28 0 2 2069 629 186 35 0 chr1 194606806 194606919 -2588513 + PB1D9 SINE Alu 4 120 0 2 2069 471 297 52 0 chr1 194606935 194607090 -2588342 + RSINE1 SINE B4 2 164 -1 2 2069 316 257 54 0 chr1 194607119 194607193 -2588239 + HAL1-3A_ME LINE L1 1975 2052 -806 2 2069 223 195 0 38 chr1 194608319 194608399 -2587033 + G-rich Low_complexity Low_complexity 2 78 0 2 2069 1301 80 0 6 chr1 194608659 194608835 -2586597 + B2_Mm2 SINE B2 1 175 -20 2 2069 615 92 0 0 chr1 194608845 194608932 -2586500 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 2069 551 280 15 22 chr1 194608967 194609102 -2586330 + RSINE1 SINE B4 30 163 -2 2 2069 1095 63 28 0 chr1 194609345 194609488 -2585944 + B1_Mus1 SINE Alu 1 147 -1 2 2069 325 71 0 51 chr1 194609488 194609547 -2585885 + (GAAAA)n Simple_repeat Simple_repeat 1 56 0 2 2069 298 345 0 0 chr1 194610298 194610417 -2585015 + CT-rich Low_complexity Low_complexity 4 122 0 2 2069 666 164 0 0 chr1 194610829 194610975 -2584457 + (TG)n Simple_repeat Simple_repeat 2 147 0 2 2069 228 293 58 41 chr1 194611404 194611525 -2583907 - L2a LINE L2 -1 3425 3303 2 2069 282 336 109 0 chr1 194612564 194612701 -2582731 + MLT1B LTR MaLR 233 384 -6 2 2069 342 0 0 0 chr1 194613414 194613452 -2581980 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2069 1069 233 63 12 chr1 194613639 194613891 -2581541 + B4A SINE B4 2 266 -26 2 2069 474 274 10 19 chr1 194613973 194614077 -2581355 + RSINE1 SINE B4 61 163 -2 2 2069 21 36 0 0 chr1 194614368 194614396 -2581036 + AT_rich Low_complexity Low_complexity 1 28 0 2 2069 552 216 34 61 chr1 194615826 194615974 -2579458 + B1F SINE Alu 1 144 -5 2 2069 347 235 224 0 chr1 194616608 194616693 -2578739 + PB1D10 SINE Alu 4 107 -10 2 2069 869 244 48 5 chr1 194616712 194616918 -2578514 + B3 SINE B2 2 216 0 2 2069 301 252 30 18 chr1 194617081 194617247 -2578185 + (TATATG)n Simple_repeat Simple_repeat 3 170 0 2 2069 1218 15 15 0 chr1 194617302 194617439 -2577993 - B1_Mm SINE Alu -8 139 1 2 2069 791 263 28 22 chr1 194618987 194619166 -2576266 + ID_B1 SINE B4 29 208 -16 2 2069 405 189 232 0 chr1 194620286 194620381 -2575051 + B1_Mur1 SINE Alu 25 141 -8 2 2069 726 230 22 40 chr1 194620395 194620617 -2574815 + HAL1-2a_MD LINE L1 2326 2543 -481 2 2069 195 42 0 0 chr1 194621632 194621656 -2573776 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 2069 1099 156 151 0 chr1 194621674 194621853 -2573579 - B3 SINE B2 -10 206 1 2 2069 420 316 0 0 chr1 194621859 194621972 -2573460 - B1F SINE Alu -32 117 5 2 2069 189 0 0 0 chr1 194622698 194622719 -2572713 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 2 2069 207 189 0 0 chr1 194623016 194623069 -2572363 + C-rich Low_complexity Low_complexity 1 53 0 2 2069 216 0 0 0 chr1 194623523 194623547 -2571885 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 2 2069 1349 46 63 0 chr1 194623551 194623725 -2571707 - B2_Mm2 SINE B2 -9 186 2 2 2069 692 276 29 44 chr1 194623929 194624134 -2571298 - ID_B1 SINE B4 -22 202 1 2 2069 581 303 7 0 chr1 194624136 194624281 -2571151 - B1F SINE Alu -3 146 1 2 2069 21 0 0 0 chr1 194625922 194625943 -2569489 + AT_rich Low_complexity Low_complexity 1 21 0 2 2069 252 0 0 0 chr1 194626039 194626067 -2569365 + (T)n Simple_repeat Simple_repeat 1 28 0 2 2069 23 54 0 0 chr1 194626526 194626563 -2568869 + AT_rich Low_complexity Low_complexity 1 37 0 2 2069 834 236 60 16 chr1 194627148 194627281 -2568151 + B3 SINE B2 17 149 -67 2 2069 560 14 14 0 chr1 194627281 194627350 -2568082 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 2069 834 236 60 16 chr1 194627350 194627401 -2568031 + B3 SINE B2 150 209 -7 2 2069 321 319 142 0 chr1 194627483 194627596 -2567836 - MIRc SINE MIR -117 151 23 2 2069 629 283 36 6 chr1 194627801 194627952 -2567480 + B4 SINE B4 55 211 -81 2 2069 906 56 0 0 chr1 194627952 194628077 -2567355 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 2069 629 283 36 6 chr1 194628077 194628092 -2567340 + B4 SINE B4 212 225 -67 2 2069 220 355 65 0 chr1 194628098 194628205 -2567227 + MIRc SINE MIR 57 170 -98 2 2069 1203 245 83 43 chr1 194628830 194629180 -2566252 + MTEa LTR MaLR 1 364 -15 2 2069 998 277 110 4 chr1 194629205 194629471 -2565961 + MTEa-int LTR MaLR 5 299 -1281 2 2069 1977 159 127 21 chr1 194629471 194629770 -2565662 - MTC LTR MaLR 0 421 81 2 2069 5342 40 8 8 chr1 194629770 194630419 -2565013 - L1Md_F2 LINE L1 -3 6579 5931 2 2069 1977 159 127 21 chr1 194630419 194630498 -2564934 - MTC LTR MaLR -341 80 3 2 2069 3504 298 55 41 chr1 194630500 194631686 -2563746 + MTEa-int LTR MaLR 295 1496 -84 2 2069 945 323 25 99 chr1 194631714 194632116 -2563316 + MTEa LTR MaLR 8 379 0 2 2069 457 250 29 57 chr1 194632165 194632305 -2563127 + B1F SINE Alu 1 136 -13 2 2069 182 255 19 19 chr1 194632899 194632951 -2562481 + L2 LINE L2 2755 2806 -613 2 2069 194 255 0 89 chr1 194633169 194633225 -2562207 + L2 LINE L2 2567 2617 -802 2 2069 334 266 89 27 chr1 194633372 194633484 -2561948 + PB1D9 SINE Alu 2 120 0 2 2069 357 246 0 0 chr1 194633485 194633550 -2561882 + RSINE1 SINE B4 3 67 -98 2 2069 2181 133 10 50 chr1 194633550 194633745 -2561687 + RMER17C LTR ERVK 1 184 -226 2 2069 1012 114 0 12 chr1 194633745 194633914 -2561518 + (TTCTC)n Simple_repeat Simple_repeat 5 171 0 2 2069 2181 133 10 50 chr1 194633914 194634136 -2561296 + RMER17C LTR ERVK 185 401 -9 2 2069 276 159 255 64 chr1 194634144 194634238 -2561194 + RMER17C-int LTR ERVK 1 112 -3126 2 2069 485 272 0 37 chr1 194634255 194634362 -2561070 + RSINE1 SINE B4 63 165 0 2 2069 342 317 0 0 chr1 194634452 194634534 -2560898 + ID4 SINE ID 2 83 0 2 2069 336 238 78 10 chr1 194634773 194634875 -2560557 + PB1D10 SINE Alu 1 109 -8 2 2069 383 244 35 11 chr1 194634889 194634974 -2560458 + PB1D10 SINE Alu 13 99 -18 2 2069 1325 271 25 14 chr1 194634974 194635329 -2560103 + ORR1E LTR MaLR 1 359 0 2 2069 363 298 0 0 chr1 194635984 194636068 -2559364 + RSINE1 SINE B4 15 98 -67 2 2069 369 0 0 0 chr1 194636148 194636189 -2559243 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 2069 563 220 190 67 chr1 194636415 194636610 -2558822 + ID_B1 SINE B4 1 219 -5 2 2069 867 20 0 0 chr1 194636610 194636711 -2558721 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 2069 240 35 0 0 chr1 194636711 194636739 -2558693 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 2069 1149 97 102 11 chr1 194636745 194636922 -2558510 + B2_Mm2 SINE B2 2 194 -1 2 2069 1074 222 9 19 chr1 194636927 194637143 -2558289 + B3 SINE B2 3 216 0 2 2069 234 310 23 35 chr1 194637538 194637625 -2557807 + MIRb SINE MIR 114 199 -69 2 2069 191 279 77 130 chr1 194637978 194638147 -2557285 - L3 LINE CR1 -3323 1166 1007 2 2069 287 104 0 20 chr1 194639970 194640019 -2555413 + (TCG)n Simple_repeat Simple_repeat 1 48 0 2 2069 425 235 17 128 chr1 194640020 194640137 -2555295 - PB1D7 SINE Alu -2 118 15 2 2069 324 241 101 0 chr1 194640181 194640260 -2555172 + ID_B1 SINE B4 81 167 -57 2 2069 315 294 94 38 chr1 194640186 194640292 -2555140 + PB1D10 SINE Alu 5 116 -1 2 2069 253 357 76 19 chr1 194640866 194641023 -2554409 - RMER15 LTR ERVL -64 511 346 2 2070 652 318 99 32 chr1 194642483 194642724 -2552708 + MER82 DNA MER2_type 287 553 -100 2 2070 252 0 0 0 chr1 194642724 194642752 -2552680 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 2070 198 0 0 0 chr1 194642752 194642773 -2552659 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 2070 652 318 99 32 chr1 194642773 194642874 -2552558 + MER82 DNA MER2_type 554 652 -1 2 2070 1116 67 0 0 chr1 194642889 194643039 -2552393 + (TTC)n Simple_repeat Simple_repeat 3 152 0 2 2070 285 309 0 0 chr1 194643075 194643159 -2552273 - MIRc SINE MIR -113 155 72 2 2070 198 0 0 0 chr1 194643557 194643579 -2551853 + (A)n Simple_repeat Simple_repeat 1 22 0 2 2070 558 249 34 45 chr1 194644079 194644256 -2551176 + RMER15 LTR ERVL 383 557 -18 2 2070 1322 315 128 22 chr1 194644364 194644897 -2550535 + MLT1G3 LTR MaLR 2 590 -5 3 2070 464 288 81 35 chr1 194644907 194645166 -2550266 + L2 LINE L2 2318 2588 -831 3 2070 357 290 136 14 chr1 194646164 194646311 -2549121 - MER20 DNA MER1_type 0 219 55 3 2070 558 302 42 28 chr1 194647328 194647584 -2547848 + B4A SINE B4 38 292 0 3 2070 464 60 30 0 chr1 194647651 194647718 -2547714 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 3 2070 844 147 18 0 chr1 194648035 194648198 -2547234 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 3 2070 460 216 52 35 chr1 194648402 194648517 -2546915 + PB1D10 SINE Alu 1 117 0 3 2070 313 333 136 33 chr1 194648531 194648773 -2546659 + MamRep434 DNA TcMar 160 426 0 3 2070 203 146 24 0 chr1 194650265 194650306 -2545126 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 2070 360 293 81 0 chr1 194650424 194650547 -2544885 - MER94 DNA AcHobo 0 134 2 3 2070 1991 155 105 6 chr1 194650685 194651029 -2544403 + ORR1C1 LTR MaLR 1 378 0 3 2070 324 102 0 0 chr1 194651066 194651115 -2544317 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 2070 296 48 24 0 chr1 194651159 194651201 -2544231 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 2070 769 165 206 29 chr1 194651244 194651419 -2544013 + B3 SINE B2 1 206 -10 3 2070 325 245 213 0 chr1 194651423 194651517 -2543915 + RSINE1 SINE B4 23 136 -29 3 2070 1004 68 91 0 chr1 194651578 194651710 -2543722 + B1_Mm SINE Alu 1 144 -3 3 2070 936 150 0 0 chr1 194651725 194651885 -2543547 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 3 2070 685 172 35 0 chr1 194652795 194652911 -2542521 - B1_Mus2 SINE Alu -5 142 23 3 2070 277 188 108 15 chr1 194652923 194652988 -2542444 - ID2 SINE ID -9 74 4 3 2070 282 160 0 0 chr1 194653054 194653104 -2542328 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 2070 494 263 124 0 chr1 194653104 194653241 -2542191 - B4A SINE B4 0 292 139 3 2070 258 216 0 19 chr1 194653255 194653307 -2542125 + RLTR18 LTR ERVK 130 180 -436 3 2070 2571 167 34 18 chr1 194653314 194653760 -2541672 + RLTR18 LTR ERVK 159 611 -5 3 2070 428 254 93 23 chr1 194653768 194653897 -2541535 - B4A SINE B4 -150 142 5 3 2070 1138 69 14 0 chr1 194654003 194654148 -2541284 + B1_Mus2 SINE Alu 1 147 0 3 2070 215 322 46 53 chr1 194654279 194654410 -2541022 + MIRc SINE MIR 112 241 -27 3 2070 438 227 72 0 chr1 194654477 194654574 -2540858 - PB1D9 SINE Alu -7 113 10 3 2070 402 299 120 40 chr1 194654601 194654751 -2540681 - B3A SINE B2 0 198 37 3 2070 1001 251 14 0 chr1 194655772 194655979 -2539453 + B3 SINE B2 4 213 -3 3 2070 1082 83 35 0 chr1 194656049 194656193 -2539239 + B1_Mur3 SINE Alu 1 149 0 3 2070 688 246 10 29 chr1 194656206 194656411 -2539021 + MER33 DNA MER1_type 124 324 0 3 2070 459 0 0 0 chr1 194656547 194656598 -2538834 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 2070 630 237 49 43 chr1 194657616 194657779 -2537653 + B3A SINE B2 31 194 -4 3 2070 191 331 172 0 chr1 194658115 194658239 -2537193 - MIRb SINE MIR -97 179 36 3 2070 607 80 35 9 chr1 194658365 194658376 -2537056 + (GA)n Simple_repeat Simple_repeat 1 11 0 3 2070 279 0 0 0 chr1 194658376 194658407 -2537025 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 2070 607 80 35 9 chr1 194658407 194658508 -2536924 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 2070 270 0 0 0 chr1 194658543 194658573 -2536859 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 3 2070 200 241 51 0 chr1 194658974 194659053 -2536379 + GA-rich Low_complexity Low_complexity 1 83 0 3 2070 23 0 0 0 chr1 194660974 194660997 -2534435 + GC_rich Low_complexity Low_complexity 1 23 0 3 2070 1244 47 0 13 chr1 194661934 194662084 -2533348 + B1_Mus1 SINE Alu 1 148 0 3 2070 216 158 0 0 chr1 194662085 194662123 -2533309 + (TAA)n Simple_repeat Simple_repeat 2 39 0 3 2070 259 265 11 67 chr1 194662617 194662706 -2532726 + RMER15 LTR ERVL 423 506 -69 3 2070 949 213 75 28 chr1 194663201 194663414 -2532018 + ID_B1 SINE B4 1 223 -1 3 2070 182 232 67 80 chr1 194663498 194663573 -2531859 + L3b LINE CR1 191 264 -218 3 2070 307 310 69 39 chr1 194663703 194664017 -2531415 - Charlie19a DNA Charlie -12 374 15 3 2070 2224 128 75 3 chr1 194664319 194664678 -2530754 - ORR1B1 LTR MaLR -8 386 2 3 2070 6279 168 62 77 chr1 194664679 194666211 -2529221 - ORR1B1-int LTR MaLR 0 1509 1 3 2070 1992 148 72 11 chr1 194666211 194666559 -2528873 - ORR1B1 LTR MaLR 0 394 26 3 2070 183 80 0 0 chr1 194667361 194667386 -2528046 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 2070 635 237 108 29 chr1 194667851 194668055 -2527377 + B4A SINE B4 1 220 -72 3 2070 1006 235 38 4 chr1 194668064 194668303 -2527129 + B4A SINE B4 5 251 -41 3 2070 504 0 0 0 chr1 194668343 194668399 -2527033 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 2070 562 146 73 0 chr1 194669045 194669141 -2526291 + PB1D9 SINE Alu 1 103 -17 3 2070 440 279 102 43 chr1 194669285 194669472 -2525960 - ID_B1 SINE B4 0 224 27 3 2070 222 62 0 0 chr1 194669586 194669618 -2525814 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 2070 417 351 18 55 chr1 194669630 194669793 -2525639 - B4 SINE B4 -12 280 124 3 2070 231 256 141 0 chr1 194670178 194670256 -2525176 + PB1 SINE Alu 33 121 -6 3 2070 237 132 0 0 chr1 194672304 194672342 -2523090 + (A)n Simple_repeat Simple_repeat 1 38 0 3 2070 477 183 0 0 chr1 194672932 194673036 -2522396 + GA-rich Low_complexity Low_complexity 1 104 0 3 2070 675 194 29 22 chr1 194673887 194674024 -2521408 - B1_Mur1 SINE Alu -1 148 11 3 2070 1100 181 5 28 chr1 194674043 194674254 -2521178 - B3 SINE B2 -10 206 1 3 2070 420 252 70 8 chr1 194674580 194674708 -2520724 - B1F SINE Alu -12 137 2 3 2070 2796 138 0 7 chr1 194675362 194675786 -2519646 - MTC LTR MaLR 0 421 1 3 2070 695 78 20 0 chr1 194676663 194676765 -2518667 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 3 2070 501 174 0 22 chr1 194678855 194678990 -2516442 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 2070 24 0 0 0 chr1 194681540 194681564 -2513868 + GC_rich Low_complexity Low_complexity 1 24 0 3 2070 206 288 18 0 chr1 194681654 194681765 -2513667 + (CCG)n Simple_repeat Simple_repeat 3 115 0 3 2070 271 206 42 32 chr1 194681904 194682034 -2513398 + C-rich Low_complexity Low_complexity 1 131 0 3 2070 186 43 0 0 chr1 194682375 194682398 -2513034 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 2070 428 176 24 0 chr1 194682534 194682619 -2512813 - PB1D9 SINE Alu 0 120 34 3 2070 388 239 43 0 chr1 194686068 194686160 -2509272 - ID_B1 SINE B4 -42 182 87 3 2070 477 115 0 0 chr1 194686409 194686496 -2508936 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 2070 299 198 183 21 chr1 194686647 194686740 -2508692 + PB1D9 SINE Alu 13 120 0 3 2070 236 300 12 0 chr1 194686844 194686924 -2508508 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 2070 25 0 0 0 chr1 194687163 194687188 -2508244 + AT_rich Low_complexity Low_complexity 1 25 0 3 2070 835 280 6 0 chr1 194689176 194689358 -2506074 - ID_B1 SINE B4 -8 216 34 3 2070 247 270 0 16 chr1 194689413 194689477 -2505955 - MIRb SINE MIR -103 165 103 3 2070 658 243 166 11 chr1 194689900 194690206 -2505226 + L1MC3 LINE L1 7194 7663 -219 3 2070 294 73 0 0 chr1 194690310 194690351 -2505081 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 2070 1179 223 165 3 chr1 194690951 194691154 -2504278 - MTD LTR MaLR -53 366 115 3 2070 378 0 0 0 chr1 194691154 194691196 -2504236 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 2070 1179 223 165 3 chr1 194691196 194691307 -2504125 - MTD LTR MaLR -305 114 2 3 2070 696 293 43 9 chr1 194691321 194691531 -2503901 - ID_B1 SINE B4 0 224 8 3 2070 245 268 55 21 chr1 194691623 194691736 -2503696 + LTR41 LTR ERVL 83 201 -594 3 2070 1087 223 148 8 chr1 194691844 194692158 -2503274 - MTE2a LTR MaLR -17 402 57 3 2070 405 0 0 0 chr1 194692161 194692206 -2503226 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 2070 441 0 0 0 chr1 194692206 194692255 -2503177 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 2070 315 303 75 50 chr1 194692266 194692426 -2503006 + MTEa LTR MaLR 69 232 -147 3 2070 229 285 56 117 chr1 194692472 194692651 -2502781 + LTR41 LTR ERVL 503 670 -88 3 2070 443 239 39 0 chr1 194692709 194692839 -2502593 - HAL1 LINE L1 -856 1651 1517 3 2070 823 252 91 0 chr1 194693062 194693260 -2502172 + B3 SINE B2 1 216 0 3 2070 21 0 0 0 chr1 194693969 194693990 -2501442 + AT_rich Low_complexity Low_complexity 1 21 0 3 2070 229 226 149 70 chr1 194694226 194694340 -2501092 + MTEa LTR MaLR 249 371 -8 3 2070 246 344 21 21 chr1 194695496 194695591 -2499841 - B4A SINE B4 -8 284 190 3 2070 238 250 137 32 chr1 194695611 194695735 -2499697 - B4A SINE B4 -154 138 2 3 2070 1273 225 92 3 chr1 194695985 194696311 -2499121 + ORR1D2 LTR MaLR 1 355 -15 3 2070 324 221 0 0 chr1 194697041 194697118 -2498314 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 2070 306 98 0 0 chr1 194697117 194697168 -2498264 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 2070 21 36 0 0 chr1 194697399 194697427 -2498005 + AT_rich Low_complexity Low_complexity 1 28 0 3 2070 4097 106 78 3 chr1 194697443 194698075 -2497357 - Lx3B LINE L1 -34 6939 6261 3 2070 378 0 0 0 chr1 194698673 194698715 -2496717 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 2070 1106 260 89 33 chr1 194699561 194699906 -2495526 + L1ME1 LINE L1 5183 5564 -615 3 2070 1153 231 121 3 chr1 194699906 194700245 -2495187 + MTEb LTR MaLR 1 379 0 3 2070 1106 282 131 37 chr1 194700245 194700623 -2494809 + L1ME1 LINE L1 5565 5973 -206 3 2070 421 226 38 70 chr1 194700623 194700697 -2494735 + B4 SINE B4 1 87 -205 3 2070 236 258 48 76 chr1 194700697 194700802 -2494630 + B1_Mur3 SINE Alu 1 102 -47 3 2070 1504 179 60 52 chr1 194700850 194701252 -2494180 - RMER10A LTR ERVL -10 432 28 3 2070 668 229 36 0 chr1 194701282 194701422 -2494010 + B4 SINE B4 146 290 -2 3 2070 578 270 0 123 chr1 194702591 194702657 -2492775 - B4A SINE B4 -4 288 225 4 2070 201 74 0 0 chr1 194702657 194702684 -2492748 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 2070 578 270 0 123 chr1 194702684 194702828 -2492604 - B4A SINE B4 -68 224 104 4 2070 259 301 139 33 chr1 194704091 194704242 -2491190 - B4A SINE B4 -3 289 123 4 2070 3138 68 2 20 chr1 194704473 194704876 -2490556 + MTA_Mm LTR MaLR 1 396 0 4 2070 286 227 157 11 chr1 194704887 194704976 -2490456 - B1_Mus1 SINE Alu -21 127 26 4 2070 535 180 40 10 chr1 194704976 194705077 -2490355 - PB1D10 SINE Alu -13 104 1 4 2070 982 247 28 20 chr1 194705176 194705428 -2490004 - B4A SINE B4 -29 263 10 4 2070 1413 81 16 0 chr1 194706188 194706374 -2489058 - B2_Mm2 SINE B2 -5 190 2 4 2070 360 234 160 0 chr1 194706738 194706832 -2488600 - ID_B1 SINE B4 -35 189 81 4 2070 469 277 0 0 chr1 194708134 194708235 -2487197 + PB1D10 SINE Alu 1 101 -16 4 2070 644 241 0 7 chr1 194708232 194708374 -2487058 + B3A SINE B2 38 178 -20 4 2070 361 273 191 42 chr1 194708893 194709061 -2486371 + B3A SINE B2 3 195 -21 4 2070 1227 166 5 9 chr1 194709135 194709354 -2486078 - URR1B DNA MER1_type -1 224 7 4 2070 786 170 51 22 chr1 194709432 194709570 -2485862 + B1_Mur3 SINE Alu 1 142 -7 4 2070 423 0 0 0 chr1 194709576 194709623 -2485809 + (CCAA)n Simple_repeat Simple_repeat 4 50 0 4 2070 235 280 91 53 chr1 194710365 194710601 -2484831 + MLT1F-int LTR MaLR 366 607 -802 4 2070 383 234 45 0 chr1 194712039 194712150 -2483282 + ID4 SINE ID 7 129 -23 4 2070 424 296 50 36 chr1 194712701 194712841 -2482591 + B4 SINE B4 128 269 -23 4 2070 636 38 0 0 chr1 194712841 194712920 -2482512 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 2070 1323 273 182 29 chr1 194713014 194713982 -2481450 + L1MC LINE L1 2856 3971 -2175 4 2070 345 323 114 13 chr1 194714224 194714541 -2480891 + L1MC LINE L1 4493 4841 -1305 4 2070 183 42 0 0 chr1 194714589 194714613 -2480819 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 2070 397 277 107 25 chr1 194715299 194715543 -2479889 + L1MC LINE L1 5016 5279 -867 4 2070 615 187 0 0 chr1 194715555 194715726 -2479706 + (CA)n Simple_repeat Simple_repeat 1 171 0 4 2070 325 255 157 14 chr1 194715735 194715882 -2479550 + L1MC LINE L1 5399 5566 -613 4 2070 324 0 0 0 chr1 194716632 194716668 -2478764 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 2070 21 0 0 0 chr1 194718389 194718410 -2477022 + AT_rich Low_complexity Low_complexity 1 21 0 4 2070 201 361 20 10 chr1 194718860 194718958 -2476474 + MER5B DNA MER1_type 20 118 -60 4 2070 217 331 51 70 chr1 194719835 194719991 -2475441 + MIRb SINE MIR 49 205 -63 4 2070 714 152 32 1 chr1 194721755 194721894 -2473538 - B1F SINE Alu -7 142 1 4 2070 29 47 0 0 chr1 194724531 194724574 -2470858 + AT_rich Low_complexity Low_complexity 1 43 0 4 2070 24 0 0 0 chr1 194724817 194724841 -2470591 + AT_rich Low_complexity Low_complexity 1 24 0 4 2070 626 225 40 81 chr1 194726567 194726591 -2468841 - B2_Mm2 SINE B2 -3 192 166 4 2070 387 0 0 0 chr1 194726591 194726634 -2468798 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 2070 915 202 122 2 chr1 194726634 194726807 -2468625 - B3 SINE B2 -24 192 3 4 2070 336 272 12 0 chr1 194727409 194727490 -2467942 - ID4 SINE ID -1 82 1 4 2070 508 162 185 17 chr1 194728199 194728318 -2467114 + B1_Mur1 SINE Alu 2 140 -9 4 2070 615 62 0 0 chr1 194728544 194728624 -2466808 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 4 2070 658 304 12 42 chr1 194728627 194728795 -2466637 - RSINE1 SINE B4 0 165 3 4 2070 474 303 139 22 chr1 194728892 194729209 -2466223 + L1M5 LINE L1 2138 2491 -3655 4 2070 337 331 98 44 chr1 194729610 194730040 -2465392 + L1M5 LINE L1 3317 3769 -2377 4 2070 845 245 63 10 chr1 194730101 194730307 -2465125 + ID_B1 SINE B4 1 217 -7 4 2070 1839 159 211 47 chr1 194730444 194730827 -2464605 + RLTR41 LTR ERV1 1 446 0 4 2070 545 241 28 28 chr1 194730998 194731143 -2464289 + B1F SINE Alu 5 149 0 4 2070 211 368 9 9 chr1 194732084 194732133 -2463299 + polypurine Low_complexity Low_complexity 4 52 0 4 2070 1463 65 16 0 chr1 194732133 194732319 -2463113 + B2_Mm2 SINE B2 1 189 -6 4 2070 211 368 9 9 chr1 194732319 194732376 -2463056 + polypurine Low_complexity Low_complexity 53 110 0 4 2070 309 305 176 0 chr1 194732417 194732548 -2462884 + RSINE1 SINE B4 11 164 -1 4 2070 387 171 0 0 chr1 194732554 194732630 -2462802 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 2070 306 0 0 0 chr1 194734134 194734168 -2461264 + (TGG)n Simple_repeat Simple_repeat 2 35 0 4 2070 256 235 126 63 chr1 194734670 194734797 -2460635 + B1F SINE Alu 5 139 -10 4 2070 317 366 32 0 chr1 194735469 194735685 -2459747 - L1M5 LINE L1 -3328 2818 2596 4 2070 1634 302 41 13 chr1 194736112 194736646 -2458786 + Lx5 LINE L1 6480 7028 -22 4 2070 848 107 48 41 chr1 194736683 194736829 -2458603 + B1_Mus1 SINE Alu 2 148 0 4 2070 360 133 0 0 chr1 194736841 194736901 -2458531 + (GGA)n Simple_repeat Simple_repeat 3 62 0 4 2070 364 228 20 29 chr1 194736942 194737038 -2458394 - B4A SINE B4 -70 95 6 4 2070 189 0 0 0 chr1 194737349 194737370 -2458062 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 2070 558 282 0 0 chr1 194737385 194737502 -2457930 - B3A SINE B2 -81 117 1 4 2070 710 165 29 29 chr1 194738996 194739133 -2456299 + B1_Mur4 SINE Alu 3 139 -11 4 2070 474 18 0 0 chr1 194739133 194739188 -2456244 + (GAAAA)n Simple_repeat Simple_repeat 2 56 0 4 2070 286 23 47 0 chr1 194739188 194739231 -2456201 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 4 2070 379 208 42 0 chr1 194739635 194739707 -2455725 + B1F2 SINE Alu 4 78 -71 4 2070 229 317 49 0 chr1 194740247 194740389 -2455043 + L1M4 LINE L1 438 586 -6318 4 2070 576 256 193 33 chr1 194740735 194741199 -2454233 + L1M4 LINE L1 1000 1537 -5367 4 2070 603 320 40 28 chr1 194741244 194741421 -2454011 - B3A SINE B2 -14 184 6 4 2070 438 269 160 45 chr1 194741427 194741808 -2453624 + L1M4 LINE L1 1550 1974 -4930 4 2070 1806 178 70 3 chr1 194741815 194742158 -2453274 + ORR1D1 LTR MaLR 1 366 -8 4 2070 3585 209 77 47 chr1 194742174 194742998 -2452434 + ORR1D1-int LTR MaLR 1 848 -522 4 2070 1412 56 0 0 chr1 194742980 194743159 -2452273 + MTB LTR MaLR 222 400 0 4 2070 304 339 202 4 chr1 194743398 194743626 -2451806 + MLT1D LTR MaLR 233 505 0 4 2070 295 275 81 27 chr1 194743707 194743965 -2451467 + L1M4 LINE L1 2957 3228 -4106 4 2070 206 62 0 30 chr1 194743973 194744006 -2451426 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 2070 637 258 128 32 chr1 194744024 194744432 -2451000 + L1M4 LINE L1 2132 2578 -3568 4 2070 769 263 149 61 chr1 194745606 194746411 -2449021 + L1M4 LINE L1 2674 3549 -2597 4 2070 421 311 47 76 chr1 194746475 194746796 -2448636 + MLT1C LTR MaLR 80 390 0 4 2070 304 324 90 0 chr1 194746821 194746966 -2448466 + L1M4 LINE L1 3601 3758 -2388 4 2070 579 289 87 62 chr1 194747025 194747301 -2448131 + B4 SINE B4 3 285 -7 4 2070 349 270 145 0 chr1 194747336 194747495 -2447937 + L1M4 LINE L1 3845 4026 -2120 4 2070 340 273 72 48 chr1 194747533 194747741 -2447691 + L1M4 LINE L1 3984 4196 -1950 4 2070 1099 197 25 0 chr1 194747897 194748100 -2447332 + MTD LTR MaLR 212 419 0 4 2070 4285 72 2 5 chr1 194749227 194749786 -2445646 + L1_Mus1 LINE L1 6010 6566 -1 4 2070 23 68 0 0 chr1 194751263 194751307 -2444125 + AT_rich Low_complexity Low_complexity 1 44 0 4 2070 500 265 7 102 chr1 194751683 194751830 -2443602 + RSINE1 SINE B4 33 165 0 4 2070 182 266 121 48 chr1 194751894 194751977 -2443455 - MIR3 SINE MIR -5 203 115 4 2070 1292 131 37 5 chr1 194752912 194753126 -2442306 - URR1A DNA MER1_type -5 221 1 4 2070 347 278 50 44 chr1 194753412 194753633 -2441799 + Lx8 LINE L1 5716 5972 -1672 4 2070 321 26 0 0 chr1 194753818 194753856 -2441576 + (TAA)n Simple_repeat Simple_repeat 3 40 0 4 2070 474 188 0 0 chr1 194753927 194754023 -2441409 + GA-rich Low_complexity Low_complexity 3 98 0 4 2070 433 226 0 0 chr1 194754038 194754122 -2441310 + Lx8 LINE L1 6529 6612 -861 4 2070 1874 162 48 55 chr1 194754122 194754501 -2440931 + ORR1C1 LTR MaLR 3 378 0 4 2070 384 217 0 115 chr1 194754501 194754536 -2440896 + Lx8 LINE L1 6624 6658 -815 4 2070 3427 33 2 0 chr1 194754536 194754931 -2440501 + MTA_Mm LTR MaLR 1 396 0 4 2070 1846 236 220 42 chr1 194754931 194755625 -2439807 + Lx8 LINE L1 6659 7473 0 4 2070 265 304 21 42 chr1 194758609 194758705 -2436727 - B4A SINE B4 -16 276 183 4 2070 306 0 0 0 chr1 194761064 194761098 -2434334 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 2070 491 315 113 4 chr1 194761397 194761636 -2433796 + L1M5 LINE L1 3068 3332 -2814 4 2070 1783 218 63 12 chr1 194761999 194762398 -2433034 + MTD LTR MaLR 1 419 0 4 2070 392 344 54 19 chr1 194762503 194762817 -2432615 + L1MC4 LINE L1 6744 7068 -974 4 2070 242 206 0 40 chr1 194763015 194763091 -2432341 + A-rich Low_complexity Low_complexity 5 77 0 4 2070 867 302 75 43 chr1 194763094 194763996 -2431436 + L1M5 LINE L1 3494 4424 -1722 4 2070 544 288 45 14 chr1 194764262 194764484 -2430948 + ERVL-B4-int LTR ERVL 2400 2628 -3086 4 2070 751 216 7 0 chr1 194765192 194765331 -2430101 + B1_Mur1 SINE Alu 4 143 -6 4 2070 279 183 24 12 chr1 194765336 194765419 -2430013 + GA-rich Low_complexity Low_complexity 2 85 0 4 2070 236 262 16 0 chr1 194767469 194767530 -2427902 + ID4 SINE ID 2 63 -20 4 2070 709 300 162 46 chr1 194767950 194768209 -2427223 + B4 SINE B4 4 292 0 4 2070 3808 131 44 24 chr1 194768471 194769134 -2426298 + RMER6A LTR ERVK 81 756 0 4 2070 971 237 31 10 chr1 194769134 194769330 -2426102 + B3 SINE B2 17 216 0 4 2070 1881 214 42 12 chr1 194769695 194770102 -2425330 + MTD LTR MaLR 1 419 0 4 2070 216 0 0 0 chr1 194770196 194770220 -2425212 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 2070 271 267 81 45 chr1 194770227 194770474 -2424958 - L1ME1 LINE L1 -151 6028 5773 4 2070 374 312 58 14 chr1 194770480 194770772 -2424660 - L1ME1 LINE L1 -606 5573 5269 4 2070 321 296 195 30 chr1 194771138 194771473 -2423959 + L1M4 LINE L1 5440 5829 -355 4 2070 235 320 197 39 chr1 194771917 194772226 -2423206 + Tigger10 DNA Tigger 1117 1474 -369 4 2070 549 276 35 7 chr1 194772234 194772376 -2423056 - RSINE1 SINE B4 -17 148 3 4 2070 200 217 0 0 chr1 194772470 194772516 -2422916 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 2070 23 33 0 0 chr1 194772594 194772624 -2422808 + AT_rich Low_complexity Low_complexity 1 30 0 4 2071 26 30 0 0 chr1 194774391 194774424 -2421008 + AT_rich Low_complexity Low_complexity 1 33 0 4 2071 23 0 0 0 chr1 194774453 194774476 -2420956 + AT_rich Low_complexity Low_complexity 1 23 0 4 2071 25 31 0 0 chr1 194774534 194774566 -2420866 + AT_rich Low_complexity Low_complexity 1 32 0 5 2071 2521 90 22 0 chr1 194774873 194775228 -2420204 + L1_Mus3 LINE L1 6276 6638 0 5 2071 1062 220 107 8 chr1 194775528 194775789 -2419643 + B4A SINE B4 6 292 0 5 2071 291 265 121 0 chr1 194776591 194776674 -2418758 - ORR1E LTR MaLR -264 95 3 5 2071 253 250 0 0 chr1 194776905 194776961 -2418471 - Tigger1 DNA MER2_type -1 2417 2362 5 2071 301 222 0 16 chr1 194776967 194777031 -2418401 + L1M4b LINE L1 3590 3652 -3682 5 2071 349 273 0 0 chr1 194777083 194777149 -2418283 + B3A SINE B2 82 147 -51 5 2071 378 0 0 0 chr1 194777150 194777192 -2418240 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 2071 273 260 31 0 chr1 194777242 194777338 -2418094 + L1M4 LINE L1 2410 2508 -3638 5 2071 250 266 147 0 chr1 194777345 194777488 -2417944 + L1M4b LINE L1 6495 6658 -376 5 2071 440 191 56 49 chr1 194777569 194777712 -2417720 + Lx5 LINE L1 6907 7050 0 5 2071 222 62 0 0 chr1 194777712 194777744 -2417688 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 2071 423 305 36 36 chr1 194777779 194778031 -2417401 + L1MB4 LINE L1 4479 4730 -1416 5 2071 387 0 0 0 chr1 194778289 194778332 -2417100 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 2071 1126 266 96 48 chr1 194778345 194779012 -2416420 + L1MB4 LINE L1 5301 5999 -181 5 2071 257 109 22 0 chr1 194779027 194779073 -2416359 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 2071 21 36 0 0 chr1 194779143 194779171 -2416261 + AT_rich Low_complexity Low_complexity 1 28 0 5 2071 20449 78 164 1 chr1 194779321 194783422 -2412010 + L1Md_F LINE L1 371 5144 -739 5 2071 484 102 0 0 chr1 194783422 194783510 -2411922 + IAPEY3-int LTR ERVK 491 578 -5903 5 2071 2959 90 5 0 chr1 194783507 194783918 -2411514 + IAPEY3-int LTR ERVK 1570 1982 -5698 5 2071 1876 74 12 0 chr1 194783895 194784152 -2411280 + IAPEY3-int LTR ERVK 2238 2497 -5183 5 2071 7300 224 36 33 chr1 194784149 194786039 -2409393 + IAPLTR3-int LTR ERVK 4906 6801 -20 5 2071 2179 86 31 16 chr1 194786039 194786359 -2409073 + IAPLTR2b LTR ERVK 1 325 -2 5 2071 210 37 0 0 chr1 194786511 194786538 -2408894 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 2071 3790 158 92 71 chr1 194786966 194787788 -2407644 - RMER19B LTR ERVK -62 840 1 5 2071 217 219 0 27 chr1 194790161 194790236 -2405196 + CT-rich Low_complexity Low_complexity 3 75 0 5 2071 917 131 14 7 chr1 194790241 194790379 -2405053 - B1_Mus1 SINE Alu 0 148 10 5 2071 404 216 38 85 chr1 194790287 194790393 -2405039 - MT2B LTR ERVL -344 257 157 5 2071 235 293 47 20 chr1 194790393 194790432 -2405000 - ORR1D2-int LTR MaLR -755 749 601 5 2071 240 246 0 0 chr1 194790434 194790491 -2404941 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 2071 228 300 128 43 chr1 194790680 194790774 -2404658 - PB1D10 SINE Alu -13 104 3 5 2071 1334 234 105 3 chr1 194792247 194792581 -2402851 - ORR1D2 LTR MaLR -2 368 1 5 2071 244 223 62 0 chr1 194792634 194792746 -2402686 + (TTAA)n Simple_repeat Simple_repeat 2 120 0 5 2071 1274 173 23 0 chr1 194792844 194793064 -2402368 - URR1B DNA MER1_type 0 225 1 5 2071 634 209 181 5 chr1 194793589 194793776 -2401656 + RMER4B LTR ERVK 6 225 -360 5 2071 1445 260 120 56 chr1 194793776 194794367 -2401065 + RMER13A LTR ERVK 1 629 -231 5 2071 384 292 0 10 chr1 194794505 194794602 -2400830 + RMER4B LTR ERVK 340 435 -150 5 2071 341 75 19 0 chr1 194794768 194794821 -2400611 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 2071 965 153 11 42 chr1 194794882 194795073 -2400359 - B2_Mm2 SINE B2 -9 186 2 5 2071 2188 109 15 12 chr1 194795454 194795780 -2399652 + ORR1A2 LTR MaLR 1 327 0 5 2071 21 36 0 0 chr1 194796285 194796313 -2399119 + AT_rich Low_complexity Low_complexity 1 28 0 5 2071 264 282 106 0 chr1 194796463 194796548 -2398884 + RSINE1 SINE B4 72 165 0 5 2071 216 0 0 0 chr1 194796970 194796994 -2398438 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 2071 645 56 0 0 chr1 194797018 194797108 -2398324 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 2071 825 40 0 0 chr1 194797111 194797212 -2398220 + (GAGAA)n Simple_repeat Simple_repeat 5 105 0 5 2071 194 231 0 15 chr1 194797226 194797292 -2398140 + GA-rich Low_complexity Low_complexity 3 67 0 5 2071 347 364 64 19 chr1 194797331 194797488 -2397944 + B4A SINE B4 1 164 -128 5 2071 324 271 204 5 chr1 194797599 194797822 -2397610 + L1MB3 LINE L1 3617 3881 -2262 5 2071 302 241 43 154 chr1 194798038 194798200 -2397232 + ORR1E LTR MaLR 227 379 0 5 2071 1585 295 113 28 chr1 194798334 194798952 -2396480 + L1MB3 LINE L1 3952 4617 -1529 5 2071 202 75 75 0 chr1 194798952 194798992 -2396440 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 2071 1779 263 82 28 chr1 194798992 194800105 -2395327 + L1MB3 LINE L1 4618 5832 -351 5 2071 249 193 70 35 chr1 194800253 194800339 -2395093 + L1MB2 LINE L1 6075 6163 -8 5 2071 450 278 177 19 chr1 194800357 194800628 -2394804 + L1MB3 LINE L1 5818 6131 -52 5 2071 680 244 62 34 chr1 194800634 194800842 -2394590 + B3 SINE B2 3 216 0 5 2071 1414 78 16 0 chr1 194800927 194801118 -2394314 - B2_Mm2 SINE B2 0 195 2 5 2071 765 187 52 0 chr1 194801124 194801258 -2394174 - B1_Mus2 SINE Alu -6 141 1 5 2071 5208 32 0 13 chr1 194801437 194802069 -2393363 - L1Md_F3 LINE L1 -13 6571 5948 5 2071 1110 80 0 0 chr1 194802178 194802316 -2393116 + B1_Mus2 SINE Alu 1 138 -9 5 2071 24 32 0 0 chr1 194802470 194802501 -2392931 + AT_rich Low_complexity Low_complexity 1 31 0 5 2071 375 283 128 20 chr1 194802501 194802649 -2392783 - RSINE1 SINE B4 0 165 2 5 2071 3647 56 22 4 chr1 194802909 194803373 -2392059 + L1Md_F2 LINE L1 6099 6570 -12 5 2071 22 0 0 0 chr1 194803420 194803442 -2391990 + AT_rich Low_complexity Low_complexity 1 22 0 5 2071 257 197 0 16 chr1 194807712 194807774 -2387658 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 2071 222 118 0 0 chr1 194807775 194807809 -2387623 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 2071 404 271 0 29 chr1 194809333 194809443 -2385989 + B1F1 SINE Alu 49 149 0 5 2071 253 254 56 63 chr1 194811497 194811623 -2383809 + Charlie1a DNA MER1_type 1112 1236 -219 5 2071 33 100 0 0 chr1 194811677 194811787 -2383645 + AT_rich Low_complexity Low_complexity 1 110 0 5 2071 566 119 0 19 chr1 194811893 194811996 -2383436 + (GGGA)n Simple_repeat Simple_repeat 3 103 0 5 2071 188 67 0 32 chr1 194812005 194812036 -2383396 + (CAGAGA)n Simple_repeat Simple_repeat 2 31 0 5 2071 1203 62 0 0 chr1 194815882 194816027 -2379405 + B1_Mus2 SINE Alu 3 147 0 5 2071 987 217 43 5 chr1 194816470 194816678 -2378754 + B3 SINE B2 1 216 0 5 2071 863 333 19 22 chr1 194816708 194816975 -2378457 + B4 SINE B4 2 267 -25 5 2071 242 56 0 27 chr1 194816975 194817012 -2378420 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 2071 182 279 23 146 chr1 194817029 194817159 -2378273 - MIRb SINE MIR -40 228 115 5 2071 1403 135 9 0 chr1 194817203 194817418 -2378014 + URR1B DNA MER1_type 9 225 0 5 2071 1813 214 69 10 chr1 194817457 194817952 -2377480 + RLTR11A2 LTR ERVK 4 527 0 5 2071 1958 129 9 70 chr1 194819789 194820131 -2375301 + ORR1A4 LTR MaLR 1 321 -8 5 2071 1019 195 59 135 chr1 194820411 194820714 -2374718 - ORR1D1 LTR MaLR 0 374 95 5 2071 2135 97 54 10 chr1 194820769 194821082 -2374350 + ORR1A2 LTR MaLR 1 327 0 5 2071 189 0 0 0 chr1 194821659 194821680 -2373752 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 5 2071 871 258 39 0 chr1 194821699 194821877 -2373555 + B3 SINE B2 5 189 -27 5 2071 334 286 0 0 chr1 194823746 194823823 -2371609 + ID_B1 SINE B4 148 224 0 5 2071 339 295 92 8 chr1 194823850 194823980 -2371452 + ID_B1 SINE B4 84 224 0 5 2071 989 279 9 5 chr1 194824521 194824744 -2370688 - 7SK RNA RNA -92 239 16 5 2071 384 71 0 0 chr1 194824827 194824883 -2370549 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 2071 687 261 97 5 chr1 194824912 194825097 -2370335 - B4A SINE B4 -45 247 46 5 2071 242 350 66 33 chr1 194825140 194825261 -2370171 + L2c LINE L2 3107 3231 -156 5 2071 317 348 90 25 chr1 194825448 194825663 -2369769 + B4 SINE B4 2 234 -58 5 2071 2236 46 0 0 chr1 194825663 194825943 -2369489 + L1Md_F2 LINE L1 5307 5586 -297 5 2071 8571 27 0 1 chr1 194825944 194826938 -2368494 + L1Md_F2 LINE L1 5588 6580 -2 5 2071 395 342 89 36 chr1 194827743 194828046 -2367386 + L1MEc LINE L1 59 377 -6023 5 2071 240 274 26 52 chr1 194828058 194828135 -2367297 + B1F1 SINE Alu 21 95 -54 5 2071 732 190 178 5 chr1 194828145 194828330 -2367102 + ID_B1 SINE B4 3 219 -5 5 2071 496 292 102 48 chr1 194828375 194828562 -2366870 + B3A SINE B2 1 197 -1 5 2071 344 347 40 80 chr1 194828818 194829185 -2366247 - MTEb LTR MaLR -15 364 1 5 2071 325 386 110 0 chr1 194829190 194829353 -2366079 + Tigger7 DNA MER2_type 15 195 -2296 5 2071 298 312 21 0 chr1 194830011 194830107 -2365325 + PB1D10 SINE Alu 1 98 -19 5 2071 659 204 91 0 chr1 194830925 194831057 -2364375 + B1_Mur1 SINE Alu 1 144 -5 5 2071 3316 138 62 4 chr1 194831704 194831942 -2363490 - RMER4B LTR ERVK -8 577 339 5 2071 462 36 0 0 chr1 194831942 194831998 -2363434 + (TCC)n Simple_repeat Simple_repeat 2 57 0 5 2071 3316 138 62 4 chr1 194831998 194832304 -2363128 - RMER4B LTR ERVK -247 338 2 5 2071 317 283 243 47 chr1 194832353 194832621 -2362811 - MER44B DNA MER2_type -24 526 205 5 2071 1221 238 176 48 chr1 194832621 194833081 -2362351 + MT2B LTR ERVL 1 519 -82 5 2071 279 79 0 0 chr1 194833081 194833119 -2362313 + (GGA)n Simple_repeat Simple_repeat 3 40 0 5 2071 3286 146 30 78 chr1 194833168 194833845 -2361587 + MERVL_2A-int LTR ERVL 4 647 -5114 5 2071 364 311 51 109 chr1 194833845 194834167 -2361265 + RLTR26 LTR ERVK 198 572 -55 5 2071 2051 121 93 0 chr1 194834302 194834633 -2360799 + MERVL_2A-int LTR ERVL 818 1176 -4585 5 2071 225 0 0 0 chr1 194834633 194834658 -2360774 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 2071 2051 121 93 0 chr1 194834658 194834690 -2360742 + MERVL_2A-int LTR ERVL 1177 1213 -4548 5 2071 257 290 168 74 chr1 194834715 194834864 -2360568 - MER44B DNA MER2_type -386 164 2 5 2071 283 342 107 60 chr1 194835259 194835558 -2359874 + ORR1E LTR MaLR 8 320 -39 5 2071 4260 279 58 52 chr1 194835636 194836004 -2359428 + MTE-int LTR MaLR 1 374 -1206 5 2071 632 42 0 50 chr1 194836004 194836104 -2359328 - L1_Mus2 LINE L1 -1 6565 6471 5 2071 4260 279 58 52 chr1 194836104 194837113 -2358319 + MTE-int LTR MaLR 375 1386 -194 5 2071 552 291 18 54 chr1 194837737 194837904 -2357528 + RSINE1 SINE B4 1 161 -4 6 2071 1201 55 0 7 chr1 194838079 194838227 -2357205 + B1_Mus2 SINE Alu 1 147 0 6 2071 672 124 0 0 chr1 194838241 194838346 -2357086 + (GGA)n Simple_repeat Simple_repeat 2 106 0 6 2071 551 261 21 14 chr1 194838869 194839003 -2356429 + B1F SINE Alu 1 137 -12 6 2071 249 33 0 0 chr1 194839003 194839033 -2356399 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 2071 1487 205 35 57 chr1 194839352 194839719 -2355713 + ORR1D2 LTR MaLR 2 360 -10 6 2071 459 253 11 0 chr1 194839747 194839842 -2355590 - B1F SINE Alu -41 108 13 6 2071 423 0 0 0 chr1 194839911 194839958 -2355474 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 2071 226 324 39 39 chr1 194839959 194840036 -2355396 - ID SINE ID -146 78 2 6 2071 843 141 37 0 chr1 194840060 194840195 -2355237 - B1_Mur3 SINE Alu -9 140 1 6 2071 1813 161 116 3 chr1 194840254 194840590 -2354842 - ORR1C2 LTR MaLR 0 384 11 6 2071 1321 35 57 23 chr1 194840594 194840769 -2354663 - B2_Mm2 SINE B2 -13 182 2 6 2071 261 0 0 0 chr1 194840938 194840967 -2354465 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 2071 236 338 30 0 chr1 194841384 194841517 -2353915 + MMSAT4 Satellite Satellite 32 168 0 6 2071 255 217 197 17 chr1 194841658 194841775 -2353657 + L1MC4 LINE L1 224 361 -5854 6 2071 937 159 169 0 chr1 194841898 194842087 -2353345 + URR1B DNA MER1_type 5 225 0 6 2071 790 199 20 14 chr1 194842181 194842329 -2353103 - B1_Mur1 SINE Alu 0 149 1 6 2071 307 339 86 45 chr1 194842737 194843006 -2352426 + MLT1J2 LTR MaLR 46 325 -123 6 2071 914 204 27 29 chr1 194843132 194843456 -2351976 + ORR1E LTR MaLR 1 370 0 6 2071 12037 81 24 8 chr1 194843622 194845508 -2349924 + MusHAL1 LINE L1 168 2084 -628 6 2071 1075 224 23 9 chr1 194846115 194846336 -2349096 + ORR1B1 LTR MaLR 158 381 -13 6 2071 21 0 0 0 chr1 194846461 194846482 -2348950 + AT_rich Low_complexity Low_complexity 1 21 0 6 2071 738 170 136 11 chr1 194846549 194846733 -2348699 + Lx4A LINE L1 6848 7054 -4 6 2071 343 303 29 34 chr1 194847168 194847331 -2348101 - MIR SINE MIR -39 229 66 6 2071 266 342 93 0 chr1 194847846 194848039 -2347393 + L2 LINE L2 2247 2457 -962 6 2071 243 217 113 73 chr1 194848105 194848229 -2347203 + L2a LINE L2 3268 3396 -30 6 2071 230 279 0 76 chr1 194848388 194848454 -2346978 - MLT1N2 LTR MaLR -265 297 237 6 2071 891 330 7 7 chr1 194848520 194848810 -2346622 + B4A SINE B4 1 290 -2 6 2071 242 234 125 21 chr1 194849637 194849733 -2345699 + MT2A LTR ERVL 1 106 -427 6 2071 1588 224 26 0 chr1 194849847 194850160 -2345272 + MTE2a LTR MaLR 58 378 -1 6 2071 216 0 0 0 chr1 194850458 194850482 -2344950 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 2071 210 349 69 8 chr1 194850569 194850699 -2344733 - L2 LINE L2 -815 2604 2467 6 2071 391 329 15 0 chr1 194850990 194851127 -2344305 + ID_B1 SINE B4 86 224 0 6 2071 24 85 0 0 chr1 194851329 194851388 -2344044 + AT_rich Low_complexity Low_complexity 1 59 0 6 2071 800 295 41 15 chr1 194851453 194851649 -2343783 + ID_B1 SINE B4 9 209 -15 6 2071 265 288 82 108 chr1 194853994 194854309 -2341123 - L1ME3B LINE L1 -313 5927 5621 6 2071 704 309 0 0 chr1 194854731 194854912 -2340520 + B3A SINE B2 2 182 -16 6 2071 372 22 0 0 chr1 194855100 194855145 -2340287 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 2071 739 247 6 58 chr1 194855170 194855342 -2340090 - RSINE1 SINE B4 0 165 3 6 2071 858 181 0 0 chr1 194855649 194855787 -2339645 + B1_Mur4 SINE Alu 1 138 -12 6 2071 239 0 32 0 chr1 194855788 194855819 -2339613 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 2071 367 296 60 17 chr1 194857428 194857545 -2337887 + RSINE1 SINE B4 4 125 -40 6 2071 27 29 0 0 chr1 194857677 194857711 -2337721 + AT_rich Low_complexity Low_complexity 1 34 0 6 2071 24 32 0 0 chr1 194857962 194857993 -2337439 + AT_rich Low_complexity Low_complexity 1 31 0 6 2071 627 234 43 21 chr1 194858596 194858736 -2336696 + B1_Mur4 SINE Alu 2 144 -6 6 2071 1028 124 6 0 chr1 194858737 194858906 -2336526 + (GA)n Simple_repeat Simple_repeat 2 171 0 6 2071 1022 107 0 6 chr1 194858948 194859108 -2336324 + (GGAA)n Simple_repeat Simple_repeat 4 162 0 6 2071 209 289 60 17 chr1 194859251 194859367 -2336065 + L3 LINE CR1 3797 3917 -572 6 2071 189 0 0 0 chr1 194859479 194859500 -2335932 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 2071 266 327 47 0 chr1 194859883 194859990 -2335442 - Charlie19a DNA Charlie -125 261 150 6 2071 197 33 0 32 chr1 194860215 194860246 -2335186 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6 2071 579 276 30 30 chr1 194863095 194863226 -2332206 - RSINE1 SINE B4 -34 131 1 6 2071 772 311 57 0 chr1 194863294 194863506 -2331926 + B4A SINE B4 1 224 -68 6 2071 863 245 9 8 chr1 194863528 194863708 -2331724 + B3 SINE B2 1 174 -19 6 2071 1189 69 0 0 chr1 194863718 194863862 -2331570 + B1_Mus1 SINE Alu 1 144 -4 6 2071 414 0 0 0 chr1 194863863 194863909 -2331523 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 2071 205 299 11 22 chr1 194863939 194864028 -2331404 + (CATA)n Simple_repeat Simple_repeat 3 90 0 6 2071 564 84 0 0 chr1 194864096 194864179 -2331253 + (TC)n Simple_repeat Simple_repeat 1 83 0 6 2071 203 176 0 0 chr1 194864428 194864462 -2330970 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 2071 341 289 49 49 chr1 194864653 194864795 -2330637 + MLT1A0 LTR MaLR 1 142 -223 6 2071 795 197 25 92 chr1 194865893 194866087 -2329345 - B3A SINE B2 -2 196 16 6 2071 826 184 183 5 chr1 194866087 194866278 -2329154 - URR1B DNA MER1_type 0 225 1 6 2071 25 31 0 0 chr1 194866532 194866564 -2328868 + AT_rich Low_complexity Low_complexity 1 32 0 6 2071 462 303 39 59 chr1 194867267 194867474 -2327958 - ORR1E LTR MaLR -165 209 11 6 2071 292 296 63 38 chr1 194867666 194867824 -2327608 + MER3 DNA MER1_type 10 171 -38 6 2071 775 318 64 25 chr1 194867824 194867880 -2327552 - MT2A LTR ERVL 0 533 466 6 2071 686 106 28 0 chr1 194867880 194868021 -2327411 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 6 2071 775 318 64 25 chr1 194868021 194868477 -2326955 - MT2A LTR ERVL -68 465 2 6 2071 481 282 40 47 chr1 194868841 194868852 -2326580 - B1F1 SINE Alu -1 148 138 6 2071 204 40 0 0 chr1 194868852 194868877 -2326555 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 2071 481 282 40 47 chr1 194868877 194869014 -2326418 - B1F1 SINE Alu -12 137 2 6 2071 624 269 0 121 chr1 194869998 194870205 -2325227 + B3A SINE B2 1 182 -16 6 2071 365 271 487 0 chr1 194870273 194870460 -2324972 - B4A SINE B4 -14 278 2 6 2071 2390 107 48 33 chr1 194870655 194871050 -2324382 - Lx LINE L1 -7 6647 6247 6 2071 4187 155 120 9 chr1 194871056 194871848 -2323584 - RMER19B LTR ERVK -22 880 1 6 2071 23 68 0 0 chr1 194871974 194872018 -2323414 + AT_rich Low_complexity Low_complexity 1 44 0 6 2071 895 74 0 29 chr1 194872102 194872241 -2323191 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 6 2071 771 11 0 0 chr1 194872251 194872339 -2323093 + (GAA)n Simple_repeat Simple_repeat 2 89 0 6 2071 290 212 0 36 chr1 194872367 194872450 -2322982 - Lx7 LINE L1 -375 7321 7242 6 2071 190 160 40 0 chr1 194872750 194872800 -2322632 + CT-rich Low_complexity Low_complexity 5 56 0 6 2071 263 232 95 24 chr1 194872880 194872964 -2322468 + MTEb LTR MaLR 278 367 -12 6 2071 406 338 121 23 chr1 194873158 194873373 -2322059 + B4 SINE B4 44 279 -13 6 2071 285 209 0 0 chr1 194873414 194873481 -2321951 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 2071 780 74 0 24 chr1 194873675 194873799 -2321633 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 2071 543 301 67 7 chr1 194873920 194874270 -2321162 + L1MB4 LINE L1 5552 5931 -249 6 2071 1250 219 63 48 chr1 194874398 194874592 -2320840 + MTC LTR MaLR 1 181 -203 6 2071 339 25 0 0 chr1 194874592 194874632 -2320800 + (TCTCCC)n Simple_repeat Simple_repeat 6 45 0 6 2071 1250 219 63 48 chr1 194874632 194874815 -2320617 + MTC LTR MaLR 182 384 0 6 2071 5395 166 117 11 chr1 194874815 194875951 -2319481 + MTC-int LTR MaLR 1 1257 -1 6 2071 2193 175 36 56 chr1 194875954 194876366 -2319066 + MTC LTR MaLR 10 413 -8 6 2071 1123 293 134 54 chr1 194876474 194877012 -2318420 + RLTR18 LTR ERVK 33 613 -3 6 2071 405 252 40 8 chr1 194877028 194877147 -2318285 - B1F SINE Alu -28 121 5 6 2071 236 200 18 0 chr1 194877159 194877214 -2318218 + L1MA10 LINE L1 6206 6261 -73 6 2071 886 126 22 0 chr1 194877222 194877357 -2318075 + B1_Mur2 SINE Alu 12 149 0 6 2071 361 350 87 50 chr1 194877369 194877646 -2317786 + HAL1 LINE L1 1178 1464 -1043 6 2071 443 110 0 0 chr1 194879114 194879187 -2316245 + L1Md_F2 LINE L1 6504 6576 -6 6 2071 626 225 72 0 chr1 194879821 194879959 -2315473 + B1_Mur3 SINE Alu 2 149 0 6 2071 603 134 17 8 chr1 194879959 194880079 -2315353 + GA-rich Low_complexity Low_complexity 1 121 0 6 2071 334 341 71 6 chr1 194880677 194880860 -2314572 + L3 LINE CR1 4090 4284 -205 6 2071 1337 51 0 6 chr1 194881782 194881961 -2313471 - L1Md_F2 LINE L1 0 6582 6405 6 2071 354 288 12 0 chr1 194882471 194882566 -2312866 + B4A SINE B4 111 206 -86 6 2071 322 304 143 93 chr1 194882681 194883024 -2312408 + HAL1 LINE L1 1658 1999 -508 6 2071 567 176 247 6 chr1 194883024 194883190 -2312242 - B3 SINE B2 -10 206 1 6 2071 322 304 143 93 chr1 194883190 194883386 -2312046 + HAL1 LINE L1 2000 2223 -284 6 2071 335 192 13 0 chr1 194883398 194883476 -2311956 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 2071 419 300 156 12 chr1 194883476 194883488 -2311944 + HAL1 LINE L1 2212 2223 -284 6 2071 351 0 0 0 chr1 194883488 194883527 -2311905 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 2071 419 300 156 12 chr1 194883527 194883764 -2311668 + HAL1 LINE L1 2224 2497 -10 6 2071 518 239 28 0 chr1 194884924 194885033 -2310399 - PB1D7 SINE Alu -6 114 3 7 2071 3284 41 5 2 chr1 194885081 194885476 -2309956 - MTA_Mm LTR MaLR 0 396 1 7 2071 1179 196 43 4 chr1 194886313 194886543 -2308889 - MTD LTR MaLR -128 291 53 7 2071 587 231 22 29 chr1 194886541 194886679 -2308753 - MTD LTR MaLR -281 138 2 7 2071 1011 134 0 0 chr1 194886728 194886870 -2308562 + B1_Mus1 SINE Alu 1 142 -6 7 2071 422 225 124 21 chr1 194886941 194887086 -2308346 + L1MB8 LINE L1 3568 3727 -2419 7 2071 261 209 146 59 chr1 194887171 194887390 -2308042 + L1MB8 LINE L1 4149 4386 -1760 7 2071 372 235 86 29 chr1 194887472 194887577 -2307855 + B4A SINE B4 122 232 -60 7 2071 258 219 145 12 chr1 194887574 194887657 -2307775 + B4A SINE B4 164 257 -35 7 2071 268 219 209 14 chr1 194887657 194887805 -2307627 + L1MB8 LINE L1 4642 4818 -1328 7 2071 650 244 93 30 chr1 194888026 194888055 -2307377 + L1MB8 LINE L1 4977 5004 -1142 7 2071 1271 42 112 12 chr1 194888055 194888224 -2307208 + B2_Mm2 SINE B2 2 187 -8 7 2071 685 251 128 76 chr1 194888224 194888579 -2306853 + L1MB8 LINE L1 5005 5358 -788 7 2071 467 226 21 21 chr1 194888590 194888685 -2306747 + B1_Mur1 SINE Alu 54 148 -1 7 2071 2025 151 54 15 chr1 194888797 194889133 -2306299 + ORR1B2 LTR MaLR 1 349 -18 7 2071 601 167 28 0 chr1 194889117 194889225 -2306207 - ORR1C1 LTR MaLR -267 111 1 7 2071 266 308 106 33 chr1 194889226 194889377 -2306055 + L1MB8 LINE L1 5949 6110 -68 7 2071 331 238 120 53 chr1 194889595 194889728 -2305704 + MLT1A1 LTR MaLR 261 402 -6 7 2071 180 0 0 0 chr1 194889800 194889820 -2305612 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 2071 546 290 63 113 chr1 194890046 194890259 -2305173 - ORR1E LTR MaLR -8 362 149 7 2071 1887 138 42 60 chr1 194890259 194890591 -2304841 + ORR1A3 LTR MaLR 1 326 0 7 2071 546 247 67 100 chr1 194890591 194890662 -2304770 - ORR1E LTR MaLR -196 163 102 7 2071 970 133 244 0 chr1 194890662 194890842 -2304590 - URR1A DNA MER1_type -2 224 1 7 2071 546 247 67 100 chr1 194890842 194890933 -2304499 - ORR1E LTR MaLR -258 101 9 7 2071 379 356 105 48 chr1 194891320 194891748 -2303684 - MLT2B3 LTR ERVL -56 498 46 7 2071 4691 156 52 66 chr1 194891748 194892662 -2302770 - RMER19B LTR ERVK 0 902 1 7 2071 385 241 241 0 chr1 194892942 194893104 -2302328 - LTR50 LTR ERVL -587 208 8 7 2071 345 313 83 35 chr1 194893144 194893313 -2302119 + MIRb SINE MIR 15 191 -77 7 2071 330 234 192 34 chr1 194893728 194893874 -2301558 - B4 SINE B4 -92 200 32 7 2071 1669 141 107 10 chr1 194894521 194894829 -2300603 - RMER19B LTR ERVK -414 488 151 7 2071 427 220 94 43 chr1 194895125 194895263 -2300169 - B1F SINE Alu -4 145 1 7 2071 279 375 28 19 chr1 194896127 194896233 -2299199 - PB1D10 SINE Alu -10 107 1 7 2071 482 272 5 25 chr1 194896258 194896387 -2299045 - PB1 SINE Alu -11 116 1 7 2071 292 263 4 4 chr1 194896408 194896424 -2299008 + ID_B1 SINE B4 69 138 -154 7 2071 274 264 0 19 chr1 194896424 194896478 -2298954 + B1F2 SINE Alu 1 53 -96 7 2071 1474 141 73 116 chr1 194896488 194896817 -2298615 + ORR1B1 LTR MaLR 41 355 -39 7 2071 36026 35 0 0 chr1 194896817 194902127 -2293305 + L1Md_T LINE L1 183 5589 -297 7 2071 9137 7 0 0 chr1 194902127 194903123 -2292309 + L1Md_T LINE L1 5590 6585 0 7 2071 214 246 99 28 chr1 194903637 194903708 -2291724 + PB1D7 SINE Alu 45 120 0 7 2071 393 109 0 0 chr1 194903889 194903944 -2291488 + ORR1A3 LTR MaLR 272 326 0 7 2072 615 310 133 48 chr1 194904236 194904612 -2290820 - MLT2D LTR ERVL -2 412 5 7 2072 339 269 105 9 chr1 194904687 194904792 -2290640 + PB1D10 SINE Alu 1 115 -2 7 2072 208 200 73 0 chr1 194904861 194904916 -2290516 - L2a LINE L2 -25 3401 3343 7 2072 388 262 0 37 chr1 194905142 194905249 -2290183 + MLT1E3 LTR MaLR 60 162 -462 7 2072 307 293 13 0 chr1 194905339 194905414 -2290018 + B1_Mur1 SINE Alu 67 142 -7 7 2072 1045 171 14 51 chr1 194905547 194905763 -2289669 + B3 SINE B2 2 209 -7 7 2072 272 333 20 20 chr1 194905779 194905877 -2289555 + MLT1E3 LTR MaLR 284 381 -243 7 2072 1066 192 20 16 chr1 194906929 194907138 -2288294 - ID_B1 SINE B4 -13 211 1 7 2072 436 274 234 11 chr1 194907340 194907534 -2287898 + MTB_Mm LTR MaLR 9 262 -157 7 2072 210 246 180 0 chr1 194907568 194907629 -2287803 + MIR SINE MIR 189 260 -2 7 2072 835 239 25 119 chr1 194909766 194909823 -2285609 - B4A SINE B4 -2 290 236 7 2072 1124 54 141 24 chr1 194909823 194909993 -2285439 - B2_Mm2 SINE B2 -4 191 2 7 2072 835 239 25 119 chr1 194909993 194910253 -2285179 - B4A SINE B4 -57 235 3 7 2072 941 252 0 25 chr1 194910289 194910492 -2284940 + B3A SINE B2 1 198 0 7 2072 905 254 0 19 chr1 194910505 194910710 -2284722 + B3 SINE B2 1 201 -15 7 2072 230 211 17 17 chr1 194911215 194911273 -2284159 - MLT1A1 LTR MaLR -10 398 341 7 2072 834 301 82 41 chr1 194911275 194911545 -2283887 + B4A SINE B4 3 283 -9 7 2072 228 211 40 100 chr1 194911759 194911859 -2283573 - ORR1E LTR MaLR -169 190 97 7 2072 242 316 85 21 chr1 194912166 194912261 -2283171 - B1F SINE Alu -1 119 17 7 2072 250 229 127 14 chr1 194912490 194912561 -2282871 + ID4_ SINE ID 3 81 -2 7 2072 610 243 29 0 chr1 194913894 194914030 -2281402 - B1_Mur1 SINE Alu -9 140 1 7 2072 1350 256 86 14 chr1 194914030 194914379 -2281053 - MTE2b LTR MaLR -1 378 5 7 2072 752 186 0 185 chr1 194914429 194914514 -2280918 - RLTR20C LTR ERVK -68 466 403 7 2072 1265 34 43 58 chr1 194914514 194914702 -2280730 - L1Md_F3 LINE L1 -1 6583 6399 7 2072 752 186 0 185 chr1 194914702 194914827 -2280605 - RLTR20C LTR ERVK -132 402 295 7 2072 591 250 172 6 chr1 194914942 194915111 -2280321 - B3A SINE B2 -1 197 1 7 2072 267 208 21 0 chr1 194917622 194917670 -2277762 - B4 SINE B4 -142 150 102 7 2072 556 112 0 27 chr1 194917692 194917802 -2277630 + (CCA)n Simple_repeat Simple_repeat 1 107 0 7 2072 323 226 7 52 chr1 194917818 194917921 -2277511 - B4A SINE B4 -190 102 2 7 2072 26 0 0 0 chr1 194918052 194918078 -2277354 + AT_rich Low_complexity Low_complexity 1 26 0 7 2072 261 279 12 0 chr1 194918637 194918723 -2276709 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 2072 442 263 79 74 chr1 194919373 194919488 -2275944 - B3A SINE B2 -7 191 67 7 2072 283 0 23 45 chr1 194919488 194919532 -2275900 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 2072 442 263 79 74 chr1 194919532 194919605 -2275827 - B3A SINE B2 -132 66 2 7 2072 267 254 14 29 chr1 194919728 194919797 -2275635 + L2a LINE L2 3359 3426 0 7 2072 747 284 79 38 chr1 194920088 194920429 -2275003 + ORR1E LTR MaLR 1 355 -4 7 2072 1324 169 5 0 chr1 194921185 194921398 -2274034 + RMER19B LTR ERVK 1 214 -688 7 2072 3486 129 45 38 chr1 194921396 194921969 -2273463 + RMER19B LTR ERVK 326 902 0 7 2072 638 234 51 13 chr1 194922305 194922461 -2272971 + RSINE1 SINE B4 2 163 -2 7 2072 285 266 51 0 chr1 194923025 194923104 -2272328 - PB1D10 SINE Alu -32 85 3 7 2072 340 309 29 0 chr1 194923369 194923503 -2271929 + B1F1 SINE Alu 1 141 -8 7 2072 721 179 138 67 chr1 194923585 194923795 -2271637 - ORR1E LTR MaLR -5 354 130 7 2072 186 43 0 0 chr1 194924011 194924034 -2271398 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 7 2072 761 158 39 0 chr1 194924035 194924162 -2271270 - B1_Mur4 SINE Alu -13 137 6 7 2072 735 153 0 43 chr1 194924299 194924440 -2270992 + GA-rich Low_complexity Low_complexity 5 143 0 7 2072 1039 129 0 11 chr1 194924440 194924620 -2270812 + (GAA)n Simple_repeat Simple_repeat 3 180 0 7 2072 735 153 0 43 chr1 194924620 194924662 -2270770 + polypurine Low_complexity Low_complexity 144 180 0 7 2072 769 191 29 0 chr1 194924684 194924820 -2270612 + B1_Mm SINE Alu 1 140 -7 7 2072 341 232 274 0 chr1 194924845 194924940 -2270492 + RSINE1 SINE B4 11 131 -34 7 2072 378 0 0 0 chr1 194924953 194924995 -2270437 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 2072 471 316 81 30 chr1 194925834 194926206 -2269226 + L1MB8 LINE L1 5561 5951 -227 7 2072 31 44 0 0 chr1 194926267 194926312 -2269120 + AT_rich Low_complexity Low_complexity 1 45 0 7 2072 332 304 69 0 chr1 194926332 194926434 -2268998 - RSINE1 SINE B4 0 165 57 7 2072 639 267 15 15 chr1 194926600 194926737 -2268695 - B1F1 SINE Alu -1 148 12 7 2072 1007 101 11 112 chr1 194926737 194926915 -2268517 + ORR1A3 LTR MaLR 1 160 -166 7 2072 1115 73 46 0 chr1 194926916 194927067 -2268365 + B2_Mm2 SINE B2 1 158 -37 7 2072 192 77 0 0 chr1 194927068 194927094 -2268338 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 2072 1297 106 0 0 chr1 194927119 194927289 -2268143 + ORR1A3 LTR MaLR 149 318 -8 7 2072 408 233 0 0 chr1 194927323 194927396 -2268036 - ID4_ SINE ID -8 75 3 7 2072 405 264 71 7 chr1 194927520 194927661 -2267771 - LTR33 LTR ERVL -8 507 358 7 2072 640 217 41 0 chr1 194927935 194928065 -2267367 + PB1D7 SINE Alu 1 142 -7 7 2072 516 261 212 25 chr1 194928414 194928740 -2266692 + MLT1B LTR MaLR 1 387 -3 7 2072 342 161 0 0 chr1 194930150 194930206 -2265226 - B1_Mur1 SINE Alu -5 144 89 7 2072 225 182 257 26 chr1 194930216 194930329 -2265103 - B2_Mm2 SINE B2 -10 185 47 7 2072 289 232 143 24 chr1 194930435 194930519 -2264913 + ID_B1 SINE B4 121 214 -10 7 2072 264 122 0 0 chr1 194930543 194930584 -2264848 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 2072 264 235 29 14 chr1 194930633 194930702 -2264730 - PB1D10 SINE Alu 0 117 48 7 2072 263 280 37 0 chr1 194932208 194932315 -2263117 + L1MC4 LINE L1 6947 7057 -985 7 2072 353 236 120 19 chr1 194932336 194932444 -2262988 + PB1D7 SINE Alu 2 120 0 7 2072 593 216 239 28 chr1 194933305 194933481 -2261951 + B3 SINE B2 1 213 -3 7 2072 491 248 18 35 chr1 194934201 194934341 -2261091 - B1_Mur1 SINE Alu 0 149 8 7 2072 363 241 0 92 chr1 194934388 194934475 -2260957 - B1_Mur1 SINE Alu 0 149 71 7 2072 246 32 0 0 chr1 194934516 194934547 -2260885 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 2072 366 23 0 0 chr1 194934585 194934628 -2260804 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 2072 240 35 0 0 chr1 194934628 194934656 -2260776 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 2072 370 258 96 22 chr1 194934754 194934889 -2260543 - B1F1 SINE Alu -3 146 2 8 2072 222 347 51 95 chr1 194934954 194935091 -2260341 + RSINE1 SINE B4 13 143 -22 8 2072 616 250 124 27 chr1 194935606 194935791 -2259641 - B3 SINE B2 -13 203 1 8 2072 577 236 55 0 chr1 194935861 194935988 -2259444 + ID_B1 SINE B4 82 215 -9 8 2072 226 324 42 56 chr1 194935868 194936012 -2259420 - YREP_Mm Unknown Unknown -1504 308 167 8 2072 630 270 60 24 chr1 194936737 194936904 -2258528 + B3A SINE B2 22 194 -4 8 2072 341 186 160 35 chr1 194936877 194937021 -2258411 - MER2 DNA MER2_type -176 169 8 8 2072 273 214 36 0 chr1 194937832 194937888 -2257544 + ID4_ SINE ID 15 72 -11 8 2072 830 125 0 23 chr1 194937990 194938121 -2257311 - B1_Mus2 SINE Alu 0 147 20 8 2072 608 149 0 0 chr1 194938181 194938275 -2257157 - B2_Mm2 SINE B2 -101 94 1 8 2072 566 300 21 0 chr1 194939055 194939195 -2256237 + ID_B1 SINE B4 82 224 0 8 2072 374 175 63 0 chr1 194939358 194939421 -2256011 - RSINE1 SINE B4 -49 116 50 8 2072 268 222 147 71 chr1 194941284 194941447 -2253985 - MIRb SINE MIR -41 227 42 8 2072 304 259 224 0 chr1 194941488 194941604 -2253828 + B1F SINE Alu 1 142 -7 8 2072 254 292 42 0 chr1 194941905 194941977 -2253455 + ID4_ SINE ID 8 82 -1 8 2072 435 281 96 0 chr1 194942056 194942191 -2253241 - B1F SINE Alu -1 148 1 8 2072 1190 91 97 0 chr1 194942638 194942803 -2252629 + B2_Mm2 SINE B2 1 181 -14 8 2072 342 97 345 26 chr1 194942888 194943001 -2252431 + B2_Mm2 SINE B2 47 195 0 8 2072 1130 70 7 7 chr1 194943012 194943157 -2252275 + B1_Mus1 SINE Alu 3 147 -1 8 2072 324 271 60 86 chr1 194943203 194943320 -2252112 + PB1D10 SINE Alu 1 114 -3 8 2072 1041 246 151 7 chr1 194944840 194945164 -2250268 + ORR1D2 LTR MaLR 1 377 -2 8 2072 243 0 0 0 chr1 194945188 194945215 -2250217 + (TTA)n Simple_repeat Simple_repeat 2 28 0 8 2072 641 247 151 6 chr1 194945326 194945505 -2249927 + B3 SINE B2 9 213 -3 8 2072 398 350 88 18 chr1 194947380 194947562 -2247870 + L1MD1 LINE L1 5841 6039 -203 8 2072 551 186 19 10 chr1 194947562 194947665 -2247767 + PB1D9 SINE Alu 1 104 -16 8 2072 398 377 82 21 chr1 194947665 194947909 -2247523 + L1MD1 LINE L1 6040 6292 -67 8 2072 540 44 0 0 chr1 194947909 194947977 -2247455 - B2_Mm1t SINE B2 -125 68 1 8 2072 321 226 48 0 chr1 194950048 194950139 -2245293 + B1_Mur2 SINE Alu 45 142 -7 8 2072 342 0 0 0 chr1 194950196 194950234 -2245198 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 8 2072 810 167 16 0 chr1 194950234 194950360 -2245072 - B1_Mur4 SINE Alu -12 138 11 8 2072 452 286 49 28 chr1 194950360 194950378 -2245054 - ID_B1 SINE B4 -12 212 66 8 2072 814 51 246 0 chr1 194950518 194950636 -2244796 + B1_Mm SINE Alu 1 147 0 8 2072 419 212 271 22 chr1 194950697 194950869 -2244563 - ID_B1 SINE B4 -1 223 9 8 2072 392 315 128 44 chr1 194950872 194951121 -2244311 + MLT2D LTR ERVL 144 413 -1 8 2072 576 293 7 15 chr1 194951381 194951516 -2243916 - ID_B1 SINE B4 -82 142 9 8 2072 826 207 21 0 chr1 194951681 194951826 -2243606 - B1_Mur2 SINE Alu 0 149 2 8 2072 1180 68 0 0 chr1 194951919 194952065 -2243367 - B1_Mm SINE Alu -1 146 1 8 2072 223 114 22 22 chr1 194952075 194952120 -2243312 + G-rich Low_complexity Low_complexity 2 46 0 8 2072 939 78 221 0 chr1 194952165 194952319 -2243113 + B2_Mm2 SINE B2 2 189 -6 8 2072 844 103 11 39 chr1 194952357 194952514 -2242918 + GA-rich Low_complexity Low_complexity 3 155 0 8 2072 1086 102 7 0 chr1 194952514 194952661 -2242771 + B1_Mus1 SINE Alu 1 148 0 8 2072 844 103 11 39 chr1 194952661 194952685 -2242747 + polypurine Low_complexity Low_complexity 156 178 0 8 2072 371 313 99 104 chr1 194952701 194952803 -2242629 + ID_B1 SINE B4 3 218 -2 8 2072 506 170 226 26 chr1 194952803 194952918 -2242514 + B1_Mur1 SINE Alu 6 143 -6 8 2072 372 244 105 112 chr1 194953034 194953177 -2242255 + B1F1 SINE Alu 1 142 -7 8 2072 377 284 0 31 chr1 194953370 194953468 -2241964 - RSINE1 SINE B4 -68 97 3 8 2072 22 0 0 0 chr1 194953511 194953533 -2241899 + AT_rich Low_complexity Low_complexity 1 22 0 8 2072 615 249 148 36 chr1 194953549 194953853 -2241579 + RLTR15 LTR ERVK 1 338 -21 8 2072 308 235 153 0 chr1 194953867 194953952 -2241480 + PB1D10 SINE Alu 14 111 -6 8 2072 262 250 64 26 chr1 194954309 194954387 -2241045 + Charlie4z DNA MER1_type 87 167 0 8 2072 480 77 0 0 chr1 194954573 194954638 -2240794 + (TCC)n Simple_repeat Simple_repeat 2 66 0 8 2072 21 0 0 0 chr1 194954755 194954776 -2240656 + AT_rich Low_complexity Low_complexity 1 21 0 8 2072 180 0 0 0 chr1 194956648 194956668 -2238764 + (T)n Simple_repeat Simple_repeat 1 20 0 8 2072 287 247 115 13 chr1 194956701 194956779 -2238653 - BC1_Mm scRNA scRNA -64 88 3 8 2072 316 192 0 0 chr1 194957243 194957295 -2238137 + PB1D7 SINE Alu 9 60 -60 8 2072 550 210 0 32 chr1 194957331 194957454 -2237978 + PB1D9 SINE Alu 1 119 -1 8 2072 350 233 182 23 chr1 194958823 194958955 -2236477 - L1MC5 LINE L1 -100 7861 7709 8 2072 404 105 18 0 chr1 194958960 194958999 -2236433 + B1_Mus2 SINE Alu 81 138 -9 8 2072 350 208 13 77 chr1 194958999 194959017 -2236415 + B4A SINE B4 201 214 -78 8 2072 216 0 0 0 chr1 194959017 194959041 -2236391 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 8 2072 350 208 13 77 chr1 194959041 194959100 -2236332 + B4A SINE B4 215 273 -19 8 2072 204 40 0 0 chr1 194959104 194959129 -2236303 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 2072 369 0 0 0 chr1 194959243 194959284 -2236148 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 2072 413 245 36 31 chr1 194959850 194959948 -2235484 - PB1D10 SINE Alu -6 111 14 8 2072 455 301 130 75 chr1 194960800 194961184 -2234248 + MLT1A1 LTR MaLR 1 405 -3 8 2072 1007 221 14 14 chr1 194961563 194961779 -2233653 - B3 SINE B2 0 216 1 8 2072 187 255 0 19 chr1 194961837 194961889 -2233543 - L2c LINE L2 -63 3324 3274 8 2072 383 331 172 56 chr1 194961890 194962134 -2233298 + B4A SINE B4 19 292 0 8 2072 180 0 0 0 chr1 194962163 194962183 -2233249 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 2072 1121 237 25 47 chr1 194962220 194962499 -2232933 + MTEb LTR MaLR 101 373 -6 8 2072 378 0 0 0 chr1 194962819 194962861 -2232571 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 2072 925 271 202 22 chr1 194962861 194963276 -2232156 - Lx8 LINE L1 -2 7471 6982 8 2072 1383 171 236 0 chr1 194963281 194963586 -2231846 + MTC LTR MaLR 1 377 -44 8 2072 546 118 0 0 chr1 194963590 194963692 -2231740 + (TC)n Simple_repeat Simple_repeat 2 103 0 8 2072 237 33 0 0 chr1 194963692 194963722 -2231710 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 2072 404 230 35 0 chr1 194963995 194964082 -2231350 - MTD LTR MaLR -312 107 18 8 2072 289 174 0 0 chr1 194964079 194964125 -2231307 + ID_B1 SINE B4 167 212 -12 8 2072 564 204 0 18 chr1 194964441 194964551 -2230881 + PB1D10 SINE Alu 9 116 -1 8 2072 351 0 0 0 chr1 194965125 194965164 -2230268 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 2072 441 0 0 0 chr1 194965427 194965476 -2229956 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 2072 311 96 0 19 chr1 194965476 194965528 -2229904 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 2072 693 213 49 7 chr1 194965528 194965670 -2229762 - B3A SINE B2 -50 148 1 8 2072 234 62 0 0 chr1 194965845 194965877 -2229555 + (GA)n Simple_repeat Simple_repeat 2 33 0 8 2072 229 258 59 79 chr1 194966882 194966983 -2228449 - MER53 DNA hAT -91 102 4 8 2072 302 253 0 0 chr1 194967010 194967085 -2228347 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 2072 22 0 0 0 chr1 194967903 194967925 -2227507 + AT_rich Low_complexity Low_complexity 1 22 0 8 2072 195 218 0 0 chr1 194968049 194968104 -2227328 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 2072 389 316 80 14 chr1 194968222 194968360 -2227072 + B1F1 SINE Alu 1 147 -2 8 2072 258 324 0 0 chr1 194968364 194968432 -2227000 + ID4_ SINE ID 1 68 -15 8 2072 290 262 18 61 chr1 194968507 194968621 -2226811 + ID_B1 SINE B4 98 206 -18 8 2072 201 94 0 0 chr1 194968685 194968717 -2226715 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 8 2072 396 224 100 27 chr1 194970442 194970552 -2224880 + ID_B1 SINE B4 102 219 -5 8 2072 365 299 97 88 chr1 194970744 194971310 -2224122 + L2b LINE L2 2821 3386 -40 8 2072 1151 36 0 0 chr1 194972018 194972157 -2223275 - B1_Mus1 SINE Alu 0 148 10 8 2072 717 237 6 40 chr1 194972157 194972192 -2223240 - ID_B1 SINE B4 0 222 55 8 2072 2158 122 33 42 chr1 194972746 194973106 -2222326 + ORR1B1 LTR MaLR 1 357 -37 8 2072 1060 211 33 42 chr1 194973115 194973328 -2222104 + B3 SINE B2 6 216 0 8 2072 286 56 0 0 chr1 194973354 194973390 -2222042 + B3A SINE B2 1 36 -162 8 2072 309 51 0 0 chr1 194973429 194973468 -2221964 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 2072 582 120 27 36 chr1 194973484 194973596 -2221836 - Lx3B LINE L1 -1 6972 6862 8 2072 768 216 44 12 chr1 194973596 194973776 -2221656 + B3A SINE B2 22 191 -4 8 2072 264 372 23 0 chr1 194973957 194974043 -2221389 - RSINE1 SINE B4 0 165 78 8 2072 213 342 25 25 chr1 194974146 194974227 -2221205 - RSINE1 SINE B4 -83 82 2 8 2072 790 250 55 42 chr1 194974236 194974453 -2220979 - ID_B1 SINE B4 -2 222 3 9 2072 341 298 0 20 chr1 194976216 194976326 -2219106 + MIR SINE MIR 28 132 -144 9 2072 992 172 141 5 chr1 194976401 194976600 -2218832 + URR1A DNA MER1_type 1 226 0 9 2072 490 249 47 73 chr1 194976600 194976643 -2218789 - CYRA11_Mm Unknown Y-chromosome -445 172 135 9 2072 374 279 0 12 chr1 194976796 194976876 -2218556 - ID4 SINE ID -2 81 3 9 2072 521 223 0 72 chr1 194976929 194977040 -2218392 - B1F1 SINE Alu -3 114 12 9 2072 717 231 69 15 chr1 194977579 194977781 -2217651 - MLT1B LTR MaLR -127 263 51 9 2072 386 167 27 8 chr1 194977836 194977892 -2217540 - B1F SINE Alu 0 149 60 9 2072 527 265 90 92 chr1 194977892 194978271 -2217161 - MTE2a LTR MaLR 0 379 2 9 2072 249 242 14 43 chr1 194978361 194978430 -2217002 - ID4 SINE ID -14 69 3 9 2072 297 339 54 59 chr1 194978655 194978859 -2216573 - MIR SINE MIR -45 217 15 9 2072 253 160 0 57 chr1 194980831 194980884 -2214548 + MIR SINE MIR 102 151 -111 9 2072 195 42 0 0 chr1 194981065 194981089 -2214343 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 2072 486 0 0 0 chr1 194981089 194981143 -2214289 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 2072 283 183 67 0 chr1 194981812 194981872 -2213560 - PB1D10 SINE Alu -5 112 49 9 2072 195 150 150 0 chr1 194982336 194982376 -2213056 + MIRb SINE MIR 192 237 -31 9 2072 242 255 0 0 chr1 194982354 194982405 -2213027 + MIRm SINE MIR 222 272 -4 9 2072 342 61 0 0 chr1 194983806 194983855 -2211577 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 2072 616 252 32 71 chr1 194983855 194984009 -2211423 - B3A SINE B2 -44 154 7 9 2072 336 242 0 0 chr1 194984126 194984188 -2211244 - ID4_ SINE ID -19 64 3 9 2072 231 365 97 39 chr1 194985255 194985409 -2210023 + MIR SINE MIR 90 256 -12 9 2072 540 254 0 25 chr1 194986123 194986244 -2209188 + PB1D7 SINE Alu 3 120 0 9 2072 260 248 42 151 chr1 194986319 194986438 -2208994 + RSINE1 SINE B4 2 107 -58 9 2072 430 260 168 30 chr1 194986921 194987052 -2208380 - B1F SINE Alu 0 149 1 9 2072 247 302 51 20 chr1 194987127 194987225 -2208207 + PB1D9 SINE Alu 1 101 -19 9 2072 583 285 19 0 chr1 194987225 194987383 -2208049 + B3A SINE B2 1 161 -37 9 2072 218 270 0 45 chr1 194987454 194987520 -2207912 + GA-rich Low_complexity Low_complexity 1 63 0 9 2072 196 344 20 20 chr1 194988212 194988310 -2207122 + MIRb SINE MIR 56 153 -115 9 2072 557 207 57 16 chr1 194990066 194990189 -2205243 - B1_Mur1 SINE Alu -1 148 21 9 2072 214 255 71 54 chr1 194990277 194990389 -2205043 + B2_Mm2 SINE B2 82 195 0 9 2072 252 200 0 0 chr1 194990513 194990553 -2204879 - B1F2 SINE Alu -106 43 4 9 2072 1059 206 33 19 chr1 194990750 194990963 -2204469 - B3 SINE B2 0 216 1 9 2072 645 254 31 0 chr1 194991021 194991151 -2204281 - RSINE1 SINE B4 -30 135 2 9 2072 1427 87 0 10 chr1 194991484 194991681 -2203751 - B2_Mm2 SINE B2 0 195 1 9 2072 268 212 91 0 chr1 194992213 194992279 -2203153 - ID2 SINE ID -10 73 2 9 2072 1087 265 0 0 chr1 194992851 194993074 -2202358 + ID_B1 SINE B4 2 224 0 9 2072 441 248 151 8 chr1 194993159 194993285 -2202147 - MER3 DNA MER1_type -10 199 56 9 2072 294 180 0 0 chr1 194994084 194994145 -2201287 + CT-rich Low_complexity Low_complexity 1 61 0 9 2072 357 238 123 3 chr1 194994504 194994645 -2200787 + MER3 DNA MER1_type 49 205 -4 9 2072 216 385 102 6 chr1 194995932 194996089 -2199343 + MIR3 SINE MIR 36 207 -1 9 2072 332 327 18 0 chr1 194998566 194998679 -2196753 - RMER15 LTR ERVL -58 517 403 9 2072 352 190 118 12 chr1 194998811 194998896 -2196536 + PB1D10 SINE Alu 23 116 -1 9 2072 486 293 106 40 chr1 194998913 194999097 -2196335 + B3A SINE B2 14 211 -5 9 2072 216 257 127 14 chr1 194999181 194999252 -2196180 + ID4_ SINE ID 3 81 -2 9 2072 295 224 22 56 chr1 194999310 194999400 -2196032 + RSINE1 SINE B4 15 101 -64 9 2072 1176 81 0 0 chr1 195002775 195002923 -2192509 + B1_Mus1 SINE Alu 1 148 0 1 2072 189 0 0 0 chr1 195002940 195002961 -2192471 + (CCA)n Simple_repeat Simple_repeat 1 21 0 2 2072 393 75 0 0 chr1 195003162 195003215 -2192217 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 2072 1169 81 134 0 chr1 195003215 195003387 -2192045 - B2_Mm2 SINE B2 0 195 1 4 2072 711 236 12 36 chr1 195003624 195003791 -2191641 - RSINE1 SINE B4 -1 164 2 5 2072 201 167 0 0 chr1 195003843 195003879 -2191553 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 2072 480 234 0 36 chr1 195004661 195004772 -2190660 + PB1D9 SINE Alu 6 112 -8 7 2072 180 0 0 0 chr1 195004772 195004792 -2190640 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 2072 845 244 123 47 chr1 195005846 195006186 -2189246 + MLT1B LTR MaLR 1 366 -24 9 2072 455 108 281 26 chr1 195006383 195006497 -2188935 - B2_Mm2 SINE B2 -6 189 47 1 2072 1269 91 23 0 chr1 195006563 195006738 -2188694 - B2_Mm1t SINE B2 -14 179 1 1 2072 661 307 76 42 chr1 195006935 195007197 -2188235 + B4A SINE B4 1 271 -21 1 2072 315 0 0 0 chr1 195007224 195007259 -2188173 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 2072 302 282 118 114 chr1 195008441 195008661 -2186771 - Tigger12c DNA MER2_type -372 362 142 1 2072 1987 174 243 4 chr1 195008868 195009404 -2186028 + Lx9 LINE L1 6981 7644 0 1 2072 303 49 0 0 chr1 195009457 195009498 -2185934 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 2072 200 328 45 0 chr1 195010045 195010112 -2185320 - MIRb SINE MIR -23 245 176 1 2072 181 58 18 71 chr1 195010121 195010177 -2185255 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 1 2072 339 294 87 19 chr1 195011994 195012098 -2183334 + PB1D10 SINE Alu 6 116 -1 1 2072 870 147 177 10 chr1 195012230 195012422 -2183010 - URR1B DNA MER1_type -1 224 1 2 2072 342 0 0 0 chr1 195012543 195012581 -2182851 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 2072 691 211 44 29 chr1 195012593 195012730 -2182702 - RSINE1 SINE B4 -25 140 2 2 2072 2271 104 6 0 chr1 195013866 195014183 -2181249 + ORR1A2 LTR MaLR 1 319 -8 2 2072 265 330 180 15 chr1 195014201 195014401 -2181031 + MLT1B LTR MaLR 104 336 -54 2 2072 279 323 64 45 chr1 195014457 195014720 -2180712 - MER2 DNA MER2_type -63 282 2 2 2072 324 0 0 0 chr1 195016334 195016370 -2179062 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 2072 239 0 0 31 chr1 195016995 195017027 -2178405 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 2072 314 269 0 0 chr1 195017141 195017208 -2178224 - PB1D10 SINE Alu -13 104 38 2 2072 229 353 67 43 chr1 195017726 195017984 -2177448 + L2b LINE L2 3089 3384 -3 2 2072 508 264 153 47 chr1 195018364 195018704 -2176728 + Charlie1a DNA MER1_type 1038 1422 -33 3 2072 1371 95 26 0 chr1 195018710 195018899 -2176533 + B2_Mm2 SINE B2 2 195 0 3 2072 1336 68 22 22 chr1 195018913 195019094 -2176338 + B2_Mm2 SINE B2 1 181 -14 3 2072 692 231 0 26 chr1 195019365 195019516 -2175916 + B1_Mur1 SINE Alu 1 147 -2 3 2072 270 0 0 0 chr1 195019538 195019568 -2175864 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 2072 1058 268 31 57 chr1 195019809 195020196 -2175236 + MTEa LTR MaLR 1 377 -2 3 2072 420 20 0 0 chr1 195020633 195020682 -2174750 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 2072 441 0 0 0 chr1 195021332 195021381 -2174051 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 2072 280 194 29 29 chr1 195021694 195021763 -2173669 + ID2 SINE ID 4 72 -11 3 2072 766 315 123 10 chr1 195021812 195022120 -2173312 + MLT1A0 LTR MaLR 10 352 -13 3 2072 910 261 110 71 chr1 195022689 195022970 -2172462 + B4 SINE B4 1 292 0 4 2072 204 158 0 0 chr1 195022979 195023017 -2172415 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 2072 282 169 0 0 chr1 195023319 195023384 -2172048 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 2072 251 273 202 95 chr1 195023406 195023564 -2171868 + ID_B1 SINE B4 2 176 -48 4 2072 377 247 135 0 chr1 195023497 195023586 -2171846 + PB1D10 SINE Alu 17 117 0 4 2072 238 226 57 0 chr1 195026023 195026076 -2169356 + MIRb SINE MIR 120 175 -93 4 2072 21 36 0 0 chr1 195026149 195026177 -2169255 + AT_rich Low_complexity Low_complexity 1 28 0 4 2072 877 186 127 20 chr1 195027847 195028044 -2167388 + ID_B1 SINE B4 3 220 -4 4 2072 233 279 0 0 chr1 195028950 195029018 -2166414 + (CATG)n Simple_repeat Simple_repeat 2 69 0 4 2072 387 0 0 0 chr1 195029080 195029123 -2166309 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4 2072 704 273 64 0 chr1 195029873 195030045 -2165387 + ID_B1 SINE B4 38 220 -4 5 2072 234 0 0 0 chr1 195030167 195030193 -2165239 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 2072 599 261 45 41 chr1 195032312 195032526 -2162906 + ID_B1 SINE B4 1 216 -8 5 2072 459 52 0 0 chr1 195032526 195032584 -2162848 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 5 2072 1506 54 0 21 chr1 195032750 195032940 -2162492 - B2_Mm2 SINE B2 -9 186 1 5 2072 240 35 0 0 chr1 195033024 195033053 -2162379 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 2072 414 0 0 0 chr1 195033217 195033263 -2162169 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 2072 609 226 166 0 chr1 195033264 195033445 -2161987 - ID_B1 SINE B4 -13 211 1 5 2072 1166 50 0 0 chr1 195033471 195033610 -2161822 - B1_Mus1 SINE Alu -9 139 1 5 2072 1770 123 146 22 chr1 195033818 195034133 -2161299 + ORR1B1 LTR MaLR 41 394 0 5 32 2283 75 3 19 chr1 195034826 195035138 -2160294 + L1_Mus2 LINE L1 6260 6566 0 6 2073 1613 47 0 0 chr1 195036273 195036463 -2158969 - B2_Mm1t SINE B2 -3 190 1 6 2073 498 33 0 0 chr1 195036683 195036743 -2158689 + (CAAAT)n Simple_repeat Simple_repeat 2 61 0 6 2073 3930 185 35 93 chr1 195037027 195038120 -2157312 + RMER1A Other Other 2 931 -135 6 2073 414 108 0 0 chr1 195038120 195038185 -2157247 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 2073 3930 151 56 44 chr1 195038185 195038324 -2157108 + RMER1A Other Other 869 1019 -11 6 2073 841 94 104 32 chr1 195038619 195038766 -2156666 - B2_Mm2 SINE B2 -7 188 31 6 2073 2001 127 19 90 chr1 195038766 195039199 -2156233 + RMER17C LTR ERVK 1 402 -8 6 2073 274 146 0 0 chr1 195039202 195039243 -2156189 - B2_Mm2 SINE B2 -153 42 2 6 2073 352 306 69 15 chr1 195039634 195039829 -2155603 + L1MC2 LINE L1 5958 6167 -166 6 2073 326 286 28 111 chr1 195039947 195040128 -2155304 - ID_B1 SINE B4 -22 202 37 6 2073 504 213 62 16 chr1 195040451 195040580 -2154852 + ORR1E LTR MaLR 1 135 -224 6 2073 459 235 71 0 chr1 195040584 195040682 -2154750 - ID_B1 SINE B4 -11 213 109 7 2073 399 160 0 0 chr1 195040883 195040958 -2154474 + CT-rich Low_complexity Low_complexity 1 75 0 7 2073 636 223 53 16 chr1 195040958 195041112 -2154320 - ID_B1 SINE B4 -46 246 83 7 2073 315 237 13 26 chr1 195041923 195042001 -2153431 + ID2 SINE ID 1 77 -6 7 2073 3966 238 76 41 chr1 195042047 195042063 -2153369 - Lx8 LINE L1 -21 7452 7439 7 2073 324 0 0 0 chr1 195042063 195042099 -2153333 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 2073 3966 238 76 41 chr1 195042099 195043210 -2152222 - Lx8 LINE L1 -35 7438 6285 7 2073 466 209 50 81 chr1 195043267 195043428 -2152004 - MER110A LTR ERV1 -312 156 1 7 2073 310 287 53 44 chr1 195043495 195043608 -2151824 + PB1D10 SINE Alu 2 115 -2 7 2073 557 28 14 0 chr1 195043689 195043760 -2151672 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 7 2073 1108 88 0 0 chr1 195043760 195043908 -2151524 - B2_Mm2 SINE B2 -46 149 2 7 2073 872 205 13 7 chr1 195043908 195044055 -2151377 + B3 SINE B2 35 182 -34 8 2073 1522 180 124 100 chr1 195044057 195044477 -2150955 + RLTR11A LTR ERVK 1 430 -98 8 2073 2270 87 29 0 chr1 195044468 195044778 -2150654 - ORR1A2 LTR MaLR -8 319 1 8 2073 477 189 0 83 chr1 195044779 195044900 -2150532 + RLTR11A LTR ERVK 418 528 0 8 2073 931 216 70 0 chr1 195044964 195045135 -2150297 + B3 SINE B2 27 209 -7 8 2073 194 83 0 53 chr1 195045156 195045169 -2150263 + (GAAAA)n Simple_repeat Simple_repeat 2 14 0 8 2073 1185 61 0 20 chr1 195045169 195045306 -2150126 + B1_Mus1 SINE Alu 1 136 -12 8 2073 485 71 0 14 chr1 195045306 195045377 -2150055 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 8 2073 1185 61 0 20 chr1 195045377 195045390 -2150042 + B1_Mus1 SINE Alu 137 148 0 8 2073 194 83 0 53 chr1 195045390 195045414 -2150018 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 8 2073 1603 274 167 16 chr1 195045553 195046110 -2149322 + Lx8 LINE L1 6598 7238 -235 8 2073 251 323 0 0 chr1 195046155 195046217 -2149215 + RMER15 LTR ERVL 405 466 -109 8 2073 486 0 0 0 chr1 195046218 195046272 -2149160 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 2073 250 236 0 18 chr1 195046547 195046603 -2148829 + CT-rich Low_complexity Low_complexity 3 57 0 9 2073 253 287 35 0 chr1 195046829 195046916 -2148516 + LTR33 LTR ERVL 23 112 -403 9 2073 219 36 0 0 chr1 195047082 195047110 -2148322 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 2073 461 238 0 0 chr1 195047117 195047201 -2148231 - B1_Mus1 SINE Alu -34 114 31 9 2073 259 296 59 85 chr1 195047205 195047323 -2148109 - RSINE1 SINE B4 -48 117 3 9 2073 263 234 138 74 chr1 195047434 195047637 -2147795 + Tigger10 DNA Tigger 570 785 -1058 9 2073 941 273 14 0 chr1 195048864 195049080 -2146352 - ID_B1 SINE B4 -1 223 5 9 2073 186 43 0 0 chr1 195049292 195049315 -2146117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 2073 243 196 150 0 chr1 195049336 195049434 -2145998 - L1MD3 LINE L1 -293 7702 7531 9 2073 1366 194 73 81 chr1 195050146 195050527 -2144905 + ORR1C2 LTR MaLR 1 378 -6 1 2073 1163 61 0 7 chr1 195051174 195051322 -2144110 + B1_Mus2 SINE Alu 1 147 0 1 2073 207 0 0 0 chr1 195051322 195051345 -2144087 + (A)n Simple_repeat Simple_repeat 1 23 0 1 2073 756 107 33 0 chr1 195052353 195052474 -2142958 - URR1A DNA MER1_type -42 184 60 1 2073 408 209 55 45 chr1 195052495 195052605 -2142827 - MTE2b LTR MaLR -268 111 1 1 2073 22 0 0 0 chr1 195052621 195052643 -2142789 + AT_rich Low_complexity Low_complexity 1 22 0 1 2073 438 305 57 0 chr1 195053068 195053209 -2142223 + ID_B1 SINE B4 73 221 -3 1 2073 1008 0 0 0 chr1 195054005 195054117 -2141315 + (TTAGGG)n Simple_repeat Simple_repeat 1 112 0 1 2073 240 206 79 40 chr1 195054489 195054565 -2140867 - L1MC4 LINE L1 0 8042 7964 1 2073 522 218 40 53 chr1 195054570 195054744 -2140688 - ID_B1 SINE B4 -9 215 52 1 2073 315 283 48 48 chr1 195054858 195055003 -2140429 - MLT1C LTR MaLR -10 457 313 1 2073 231 336 197 8 chr1 195055128 195055245 -2140187 - MLT1C LTR MaLR -362 143 5 1 2073 283 349 58 39 chr1 195055661 195055920 -2139512 - L1MC4a LINE L1 -379 7503 7240 1 2073 547 233 42 18 chr1 195055906 195056072 -2139360 - L1MB3 LINE L1 -42 6141 5972 1 2073 1223 83 21 37 chr1 195056156 195056343 -2139089 - B2_Mm1t SINE B2 -9 184 1 1 2073 306 318 15 29 chr1 195056368 195056504 -2138928 - L1MB3 LINE L1 -536 5647 5514 1 2073 196 176 0 50 chr1 195056511 195056571 -2138861 + CT-rich Low_complexity Low_complexity 4 60 0 1 2073 568 234 39 16 chr1 195056571 195056748 -2138684 - L1MB3 LINE L1 -802 5489 5313 1 2073 297 0 0 0 chr1 195056751 195056784 -2138648 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1 2073 999 291 73 10 chr1 195056811 195057196 -2138236 - L1MC4 LINE L1 -762 7280 6872 1 2073 378 0 0 0 chr1 195057203 195057245 -2138187 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1 2073 381 75 0 0 chr1 195057438 195057491 -2137941 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 2073 272 239 59 15 chr1 195058114 195058182 -2137250 - Kanga1 DNA Tc2 0 1745 1675 1 2073 246 156 0 0 chr1 195058387 195058432 -2137000 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 2073 450 261 35 28 chr1 195058467 195058609 -2136823 - RSINE1 SINE B4 0 165 23 1 2073 435 317 174 19 chr1 195058751 195059114 -2136318 - Kanga1 DNA Tc2 -1201 544 126 1 2073 838 214 64 34 chr1 195059104 195059370 -2136062 - MTD-int LTR MaLR -902 356 1 1 2073 1840 143 201 0 chr1 195059370 195059719 -2135713 - MTD LTR MaLR 0 419 1 1 2073 908 173 6 0 chr1 195059785 195059964 -2135468 + CT-rich Low_complexity Low_complexity 1 180 0 1 2073 233 268 126 11 chr1 195060585 195060672 -2134760 - ID_B1 SINE B4 -41 183 87 1 2073 267 31 0 0 chr1 195061604 195061636 -2133796 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1 2073 189 0 0 0 chr1 195061888 195061909 -2133523 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 2073 203 244 0 0 chr1 195062018 195062063 -2133369 + GA-rich Low_complexity Low_complexity 3 47 0 1 2073 2370 56 20 75 chr1 195062226 195062501 -2132931 + ORR1A2 LTR MaLR 1 269 -58 1 2073 1477 74 0 5 chr1 195062501 195062704 -2132728 + L1_Mus2 LINE L1 6364 6565 -1 1 2073 2370 56 20 75 chr1 195062704 195062718 -2132714 + ORR1A2 LTR MaLR 270 272 -55 1 2073 207 0 0 0 chr1 195062718 195062741 -2132691 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 2073 2370 56 20 75 chr1 195062741 195062796 -2132636 + ORR1A2 LTR MaLR 273 327 0 1 2073 695 202 0 12 chr1 195062940 195063100 -2132332 + CT-rich Low_complexity Low_complexity 3 160 0 1 2073 449 272 0 10 chr1 195063100 195063204 -2132228 - PB1D7 SINE Alu 0 120 18 1 2073 983 172 124 58 chr1 195063947 195064206 -2131226 + B4A SINE B4 3 278 -14 1 2073 695 233 14 14 chr1 195065280 195065428 -2130004 - B1_Mur1 SINE Alu 0 149 2 1 2073 1432 136 5 0 chr1 195065595 195065816 -2129616 + URR1A DNA MER1_type 1 222 -4 1 2073 483 233 11 0 chr1 195066974 195067064 -2128368 + B1_Mur4 SINE Alu 2 92 -58 1 2073 324 0 0 0 chr1 195067423 195067459 -2127973 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 2073 346 156 0 38 chr1 195068821 195068901 -2126531 + GA-rich Low_complexity Low_complexity 4 80 0 1 2073 424 191 110 25 chr1 195069478 195069596 -2125836 - B1F1 SINE Alu -9 140 13 1 2073 21 36 0 0 chr1 195070380 195070408 -2125024 + AT_rich Low_complexity Low_complexity 1 28 0 1 2073 227 250 0 38 chr1 195070471 195070550 -2124882 + GA-rich Low_complexity Low_complexity 2 77 0 1 2073 369 62 0 0 chr1 195070684 195070732 -2124700 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 2073 423 268 10 49 chr1 195071014 195071116 -2124316 - PB1D10 SINE Alu -8 109 12 1 2073 349 247 13 0 chr1 195071136 195071286 -2124146 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 2073 891 274 51 61 chr1 195071318 195071613 -2123819 - B4A SINE B4 0 292 1 1 2073 6917 33 0 0 chr1 195071701 195072496 -2122936 - L1Md_T LINE L1 0 6582 5788 1 2073 2266 132 70 0 chr1 195072650 195073007 -2122425 + RLTR14 LTR ERV1 1 382 0 1 2073 1415 246 56 39 chr1 195073007 195073375 -2122057 + RLTR14-int LTR ERV1 1 376 -4941 1 2073 873 64 0 0 chr1 195073375 195073500 -2121932 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 2073 1415 203 299 45 chr1 195073500 195073639 -2121793 + RLTR14-int LTR ERV1 377 577 -4740 1 2073 189 0 0 0 chr1 195073639 195073660 -2121772 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 2073 7123 181 118 49 chr1 195073660 195074884 -2120548 + RLTR14-int LTR ERV1 2518 3506 -1811 1 2073 180 0 0 0 chr1 195074884 195074904 -2120528 + (CTTTG)n Simple_repeat Simple_repeat 1 20 0 1 2073 7123 177 78 50 chr1 195074904 195075468 -2119964 + RLTR14-int LTR ERV1 3507 4129 -1188 1 2073 1200 196 16 36 chr1 195075474 195075723 -2119709 - ORR1D-int LTR MaLR -27 1343 1100 1 2073 282 72 0 23 chr1 195075721 195075764 -2119668 + ORR1B2-int LTR MaLR 1467 1508 -1 1 2073 2372 120 48 8 chr1 195075764 195076117 -2119315 + ORR1B2 LTR MaLR 1 367 0 1 2073 790 228 47 0 chr1 195077254 195077403 -2118029 - RSINE1 SINE B4 -7 158 3 1 2073 294 370 53 23 chr1 195077456 195077719 -2117713 - L1MB8 LINE L1 -47 6131 5861 1 2073 893 174 6 18 chr1 195077846 195078010 -2117422 + RLTR13C1 LTR ERVK 1 162 -821 1 2073 401 292 20 0 chr1 195078021 195078168 -2117264 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 2073 310 229 33 0 chr1 195078184 195078337 -2117095 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 2073 203 191 16 0 chr1 195078392 195078455 -2116977 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 2073 329 198 25 8 chr1 195078514 195078636 -2116796 + (TG)n Simple_repeat Simple_repeat 1 124 0 1 2073 480 234 0 18 chr1 195079516 195079686 -2115746 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 2073 199 276 0 20 chr1 195079697 195079797 -2115635 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 2073 475 210 223 29 chr1 195079813 195079908 -2115524 - L1MA4 LINE L1 -328 5963 5860 1 2073 2485 158 8 72 chr1 195079908 195080313 -2115119 - RMER4A LTR ERVK 0 466 77 1 2073 1430 48 26 16 chr1 195080313 195080502 -2114930 + B2_Mm1t SINE B2 2 192 -1 1 2073 2485 158 8 72 chr1 195080502 195080594 -2114838 - RMER4A LTR ERVK -390 76 1 1 2073 475 205 224 30 chr1 195080594 195080725 -2114707 - L1MA4 LINE L1 -441 5859 5693 1 2073 271 226 128 57 chr1 195080766 195080907 -2114525 - L1MD LINE L1 -831 5528 5378 1 2073 1432 276 123 39 chr1 195080919 195081850 -2113582 - L1MA4 LINE L1 -840 5303 4294 1 2073 643 133 14 41 chr1 195082098 195082390 -2113042 + (CA)n Simple_repeat Simple_repeat 1 283 0 1 2073 592 154 11 33 chr1 195082411 195082592 -2112840 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 2073 229 89 0 43 chr1 195082616 195082663 -2112769 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 2073 1247 262 35 64 chr1 195082816 195083244 -2112188 + MER31A LTR ERV1 1 422 -44 1 2073 945 282 44 7 chr1 195083433 195083708 -2111724 + B4 SINE B4 4 288 -4 1 2073 7988 65 10 2 chr1 195084044 195085384 -2110048 - L1_Mus1 LINE L1 0 6567 5221 1 2073 401 319 88 57 chr1 195085932 195086228 -2109204 - HAL1 LINE L1 -904 1603 1299 1 2073 314 385 0 16 chr1 195086398 195086580 -2108852 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 2073 753 299 38 31 chr1 195086589 195086879 -2108553 - B4A SINE B4 0 292 1 1 2073 818 223 25 0 chr1 195087729 195087886 -2107546 - ID_B1 SINE B4 -28 196 36 1 2073 272 309 87 8 chr1 195088090 195088217 -2107215 - L2c LINE L2 -225 3162 3026 1 2073 345 333 29 14 chr1 195088686 195088826 -2106606 + MIR3 SINE MIR 38 179 -29 1 2073 524 56 45 0 chr1 195089160 195089249 -2106183 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 2073 181 167 18 18 chr1 195090195 195090250 -2105182 + CT-rich Low_complexity Low_complexity 2 56 0 1 2073 756 242 4 2 chr1 195090907 195091413 -2104019 + (CA)n Simple_repeat Simple_repeat 1 507 0 1 2073 183 156 0 0 chr1 195091430 195091462 -2103970 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 2073 2349 117 146 0 chr1 195092102 195092486 -2102946 + BGLII_B LTR ERVK 2 441 0 1 2073 487 265 0 0 chr1 195092738 195092840 -2102592 - ID_B1 SINE B4 -1 223 122 1 2073 1036 136 217 0 chr1 195092912 195093096 -2102336 - URR1A DNA MER1_type 0 226 3 1 2073 1022 122 76 5 chr1 195093509 195093707 -2101725 + BGLII_B LTR ERVK 153 364 -77 1 2073 1455 228 82 3 chr1 195093932 195094262 -2101170 - ORR1D2 LTR MaLR -14 356 1 1 2073 2626 168 99 21 chr1 195094668 195095191 -2100241 - RMER19B LTR ERVK 0 902 339 1 2073 637 296 38 0 chr1 195095404 195095563 -2099869 - MTEb LTR MaLR -1 378 214 1 2073 284 380 0 40 chr1 195095671 195095797 -2099635 - L3 LINE CR1 -838 3651 3531 1 2073 213 250 54 0 chr1 195096022 195096078 -2099354 - L2c LINE L2 -59 3328 3270 1 2073 5266 55 12 0 chr1 195096450 195097101 -2098331 + L1_Mus2 LINE L1 5908 6566 0 1 2073 226 67 44 0 chr1 195097491 195097536 -2097896 + (TGGG)n Simple_repeat Simple_repeat 1 47 0 1 2073 333 318 31 8 chr1 195097915 195098042 -2097390 + CT-rich Low_complexity Low_complexity 4 133 0 1 2073 219 36 0 0 chr1 195098139 195098167 -2097265 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 2073 180 77 0 0 chr1 195098401 195098427 -2097005 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 2073 215 60 39 39 chr1 195099412 195099464 -2095968 + (GGGTG)n Simple_repeat Simple_repeat 5 56 0 1 2073 333 0 0 0 chr1 195100003 195100040 -2095392 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 2073 401 105 47 0 chr1 195100040 195100126 -2095306 + GA-rich Low_complexity Low_complexity 6 95 0 1 2073 264 233 198 0 chr1 195100202 195100288 -2095144 + PB1D7 SINE Alu 18 120 0 1 2073 1094 124 47 26 chr1 195101991 195102182 -2093250 + B2_Mm2 SINE B2 1 195 0 1 2073 883 144 17 46 chr1 195102295 195102470 -2092962 - Lx2A1 LINE L1 -4 7004 6835 1 2073 462 101 0 0 chr1 195102910 195102979 -2092453 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 2073 468 231 177 24 chr1 195102995 195103119 -2092313 - B4 SINE B4 -14 278 136 1 2073 702 150 0 0 chr1 195103161 195103281 -2092151 + (TCC)n Simple_repeat Simple_repeat 3 122 0 1 2073 268 299 0 0 chr1 195103287 195103354 -2092078 - B4 SINE B4 -225 67 1 1 2073 243 372 13 0 chr1 195103435 195103513 -2091919 - ID4_ SINE ID 0 83 5 1 2073 253 283 246 16 chr1 195103791 195103913 -2091519 + L2b LINE L2 3204 3353 -22 1 2073 310 295 108 24 chr1 195105108 195105285 -2090147 + MIRb SINE MIR 9 198 -70 2 2073 214 333 111 83 chr1 195105428 195105824 -2089608 - L2c LINE L2 -9 3378 2972 2 2073 640 259 62 12 chr1 195106093 195106253 -2089179 - B3 SINE B2 -1 215 48 2 2073 332 257 0 0 chr1 195106327 195106397 -2089035 - B3A SINE B2 -120 78 9 2 2073 372 345 134 0 chr1 195106626 195106797 -2088635 + MLT1E3 LTR MaLR 420 613 -11 2 2073 619 231 10 10 chr1 195107032 195107167 -2088265 - ID_B1 SINE B4 -47 245 107 2 2073 264 268 34 68 chr1 195107097 195107185 -2088247 - PB1D7 SINE Alu -22 98 14 2 2073 520 194 11 21 chr1 195107246 195107341 -2088091 - RLTR20B2 LTR ERVK 0 563 470 2 2073 378 0 0 0 chr1 195107341 195107383 -2088049 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 2073 368 158 0 13 chr1 195107383 195107460 -2087972 + G-rich Low_complexity Low_complexity 2 77 0 2 2073 2283 172 68 9 chr1 195107466 195107895 -2087537 - RLTR20B2 LTR ERVK -106 454 1 2 2073 253 269 24 49 chr1 195108632 195108714 -2086718 + ID4 SINE ID 4 83 0 2 2073 781 254 16 52 chr1 195109047 195109238 -2086194 - B3A SINE B2 -14 184 1 2 2073 2307 89 0 87 chr1 195109413 195109716 -2085716 + ORR1A3 LTR MaLR 1 283 -43 2 2073 2151 135 0 3 chr1 195109716 195110051 -2085381 + Lx LINE L1 6320 6653 -1 2 2073 2307 89 0 87 chr1 195110051 195110104 -2085328 + ORR1A3 LTR MaLR 284 326 0 2 2073 446 299 36 21 chr1 195110252 195110392 -2085040 + MER5B DNA MER1_type 37 178 0 2 2073 432 307 99 16 chr1 195110604 195110786 -2084646 + MER3 DNA MER1_type 4 200 -9 2 2073 242 253 87 87 chr1 195110952 195111023 -2084409 + MTE2b LTR MaLR 269 346 -33 2 2073 276 30 0 0 chr1 195111023 195111056 -2084376 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 2073 242 253 87 87 chr1 195111056 195111088 -2084344 + MTE2b LTR MaLR 347 372 -7 2 2073 919 225 67 14 chr1 195111138 195111296 -2084136 - Lx9 LINE L1 -1 7643 7475 2 2073 920 140 0 74 chr1 195111296 195111445 -2083987 + B1_Mur4 SINE Alu 1 139 -11 2 2073 258 56 0 0 chr1 195111445 195111481 -2083951 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 2073 920 140 0 74 chr1 195111481 195111493 -2083939 + B1_Mur4 SINE Alu 140 150 0 2 2073 919 225 67 14 chr1 195111493 195111618 -2083814 - Lx9 LINE L1 -170 7474 7345 2 2073 2635 83 0 0 chr1 195111618 195111945 -2083487 - ORR1A2 LTR MaLR 0 327 1 2 2073 5289 92 3 4 chr1 195111945 195112665 -2082767 - ORR1A2-int LTR MaLR 0 1963 1245 2 2073 1010 132 205 5 chr1 195112816 195113006 -2082426 + RMER4B LTR ERVK 358 585 0 2 2073 956 257 15 0 chr1 195113177 195113379 -2082053 + MTEa LTR MaLR 5 209 -170 2 2073 248 173 38 19 chr1 195113391 195113444 -2081988 + MTEa LTR MaLR 310 363 -16 2 2073 195 42 0 0 chr1 195113617 195113641 -2081791 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 2073 292 222 0 11 chr1 195113932 195114003 -2081429 + L2a LINE L2 3308 3426 0 2 2073 1411 176 97 37 chr1 195114998 195115381 -2080051 - Lx9 LINE L1 0 7644 7239 2 2073 808 135 23 0 chr1 195115564 195115697 -2079735 - Lx9 LINE L1 -411 7233 7098 2 2073 306 0 0 0 chr1 195116729 195116763 -2078669 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 2073 617 230 36 0 chr1 195116769 195116908 -2078524 - B1F SINE Alu 0 149 6 2 2073 441 309 19 32 chr1 195116908 195116926 -2078506 - ID_B1 SINE B4 0 224 70 2 2073 1186 183 15 73 chr1 195117303 195117540 -2077892 + MTD LTR MaLR 176 403 -16 2 2073 2938 160 23 14 chr1 195117540 195118060 -2077372 - RLTR11A LTR ERVK -3 525 1 2 2073 1186 183 15 73 chr1 195118060 195118081 -2077351 + MTD LTR MaLR 404 419 0 2 2073 1219 62 0 0 chr1 195118312 195118458 -2076974 + B1_Mus2 SINE Alu 2 147 0 2 2073 252 0 0 0 chr1 195118458 195118486 -2076946 + (A)n Simple_repeat Simple_repeat 1 28 0 2 2073 377 341 49 27 chr1 195118929 195119113 -2076319 + MER53 DNA hAT 1 188 -5 2 2073 242 0 0 57 chr1 195119838 195119873 -2075559 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 2073 1614 129 78 0 chr1 195120718 195120989 -2074443 - Lx2 LINE L1 0 6997 6706 2 2073 2798 102 9 16 chr1 195120989 195121427 -2074005 + Lx2 LINE L1 5771 6205 -792 2 2073 216 0 0 0 chr1 195121512 195121536 -2073896 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 2073 888 228 15 15 chr1 195121828 195122024 -2073408 + B3A SINE B2 1 196 -2 2 2073 272 302 0 0 chr1 195122222 195122285 -2073147 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 2 2073 456 19 0 0 chr1 195123039 195123092 -2072340 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 2073 390 125 0 0 chr1 195123092 195123172 -2072260 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 2073 194 247 0 13 chr1 195123545 195123623 -2071809 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 2073 932 289 27 34 chr1 195123623 195123917 -2071515 - B4 SINE B4 0 292 1 2 2073 199 196 0 56 chr1 195124152 195124206 -2071226 + MIRb SINE MIR 177 227 -41 2 2073 827 227 71 20 chr1 195125201 195125399 -2070033 + ID_B1 SINE B4 1 208 -16 2 2073 269 356 70 36 chr1 195125465 195125895 -2069537 - L2a LINE L2 -139 3287 2835 2 2073 343 252 115 34 chr1 195125945 195126093 -2069339 - L2a LINE L2 -721 2698 2539 2 2073 819 275 14 9 chr1 195127042 195127262 -2068170 + ID_B1 SINE B4 3 223 -1 2 2073 396 221 0 0 chr1 195128961 195129115 -2066317 + (CACCC)n Simple_repeat Simple_repeat 5 158 0 2 2073 348 24 0 0 chr1 195130155 195130196 -2065236 + (T)n Simple_repeat Simple_repeat 1 41 0 2 2073 712 245 81 46 chr1 195130233 195130430 -2065002 - ID_B1 SINE B4 -19 205 2 2 2073 777 264 54 138 chr1 195131499 195131904 -2063528 + MTE2a LTR MaLR 1 371 -8 2 2073 781 270 118 39 chr1 195132156 195132361 -2063071 - L1MA5A LINE L1 -408 5889 5650 2 2073 2301 106 19 0 chr1 195132361 195132682 -2062750 - ORR1A2 LTR MaLR 0 327 1 2 2073 781 266 115 37 chr1 195132682 195132889 -2062543 - L1MA5A LINE L1 -608 5689 5478 2 2073 2974 281 52 56 chr1 195132975 195134110 -2061322 - Lx7 LINE L1 -328 7368 6239 2 2073 2053 239 45 21 chr1 195134107 195134711 -2060721 + Lx7 LINE L1 5629 6246 -1450 2 2073 1247 282 177 19 chr1 195134776 195135561 -2059871 - L1_Mur3 LINE L1 -484 5396 4488 2 2073 211 271 171 0 chr1 195135807 195135877 -2059555 - ID4_ SINE ID 0 83 2 2 2073 810 225 7 0 chr1 195135897 195136039 -2059393 - B1_Mur1 SINE Alu -6 143 1 2 2073 262 271 116 12 chr1 195136051 195136137 -2059295 - PB1 SINE Alu -3 124 30 2 2073 558 71 0 0 chr1 195137234 195137318 -2058114 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 2073 265 326 21 11 chr1 195138382 195138475 -2056957 + CT-rich Low_complexity Low_complexity 2 95 0 2 2073 342 0 0 0 chr1 195138634 195138672 -2056760 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 2073 474 18 0 0 chr1 195138672 195138726 -2056706 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 2073 189 107 0 0 chr1 195139362 195139390 -2056042 + (TATG)n Simple_repeat Simple_repeat 3 30 0 2 2073 1021 276 108 12 chr1 195139397 195139731 -2055701 - ORR1D2 LTR MaLR 0 370 5 2 2073 351 0 0 0 chr1 195139738 195139777 -2055655 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 2073 1386 255 13 75 chr1 195139794 195140180 -2055252 - MTEb LTR MaLR -15 364 3 2 2073 392 320 16 8 chr1 195140693 195140819 -2054613 - RMER5 LTR ERV1 -15 519 393 2 2073 397 246 223 35 chr1 195140819 195141003 -2054429 - RMER5 LTR ERV1 -264 270 52 2 2073 370 340 51 116 chr1 195142928 195143264 -2052168 - L1ME4a LINE L1 -6 6118 5805 2 2073 190 358 25 0 chr1 195143790 195143871 -2051561 + MIR SINE MIR 112 194 -68 2 2073 287 113 0 16 chr1 195143872 195143935 -2051497 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 2073 1061 230 5 27 chr1 195143935 195144154 -2051278 - ID_B1 SINE B4 0 224 11 2 2073 377 319 123 6 chr1 195144467 195144637 -2050795 - L2a LINE L2 0 3426 3237 2 2073 489 274 115 83 chr1 195145461 195145739 -2049693 + MTE2b LTR MaLR 6 292 -87 2 2073 319 195 69 8 chr1 195145922 195146013 -2049419 + MTE2b LTR MaLR 307 421 0 2 2073 195 232 17 35 chr1 195146089 195146147 -2049285 + L2a LINE L2 3355 3411 -15 2 2073 283 286 17 67 chr1 195147636 195147756 -2047676 + ORR1D1 LTR MaLR 6 119 -255 2 2073 291 313 93 25 chr1 195147771 195147889 -2047543 + ORR1E LTR MaLR 66 191 -168 2 2073 707 224 77 39 chr1 195147952 195148133 -2047299 + B4A SINE B4 99 286 -6 2 2073 297 254 48 20 chr1 195148179 195148281 -2047151 - MTEa LTR MaLR -17 362 271 2 2073 241 246 131 0 chr1 195148395 195148456 -2046976 - B4A SINE B4 -219 73 5 2 2073 403 318 121 76 chr1 195148648 195148937 -2046495 - MARNA DNA Mariner -215 371 70 2 2073 423 331 63 11 chr1 195149108 195149282 -2046150 + MER20 DNA MER1_type 37 219 0 2 2073 238 284 55 33 chr1 195149624 195149715 -2045717 - ORR1E LTR MaLR -12 347 255 2 2073 183 284 43 121 chr1 195150161 195150277 -2045155 - L3 LINE CR1 -1075 3414 3308 2 2073 1051 189 34 24 chr1 195150660 195150866 -2044566 - URR1B DNA MER1_type -17 208 1 2 2073 610 255 11 90 chr1 195151154 195151331 -2044101 + RSINE1 SINE B4 3 165 0 2 2073 285 29 0 0 chr1 195151338 195151372 -2044060 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2 2073 581 124 10 0 chr1 195151474 195151571 -2043861 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 2073 391 310 21 86 chr1 195152361 195152548 -2042884 + ID_B1 SINE B4 4 178 -46 2 2073 1397 166 14 0 chr1 195155484 195155707 -2039725 - URR1A DNA MER1_type 0 226 1 2 2073 192 77 0 0 chr1 195159264 195159290 -2036142 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2 2073 234 0 0 0 chr1 195159295 195159321 -2036111 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 2073 526 287 16 26 chr1 195159340 195159544 -2035888 - B4A SINE B4 -14 278 2 2 2073 225 217 22 0 chr1 195159584 195159630 -2035802 - L2c LINE L2 -38 3349 3303 2 2073 281 284 12 12 chr1 195161312 195161394 -2034038 - MIR SINE MIR -67 141 60 2 2073 294 29 0 0 chr1 195162183 195162218 -2033214 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 2073 351 0 0 0 chr1 195162218 195162256 -2033176 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 2073 307 278 144 31 chr1 195163127 195163287 -2032145 - MIR SINE MIR -15 247 70 2 2073 241 309 77 56 chr1 195163355 195163588 -2031844 + L2b LINE L2 3070 3307 -68 2 2073 273 279 56 28 chr1 195164283 195164390 -2031042 - L2b LINE L2 -39 3336 3227 2 2074 662 266 6 55 chr1 195167183 195167346 -2028086 - RSINE1 SINE B4 0 165 11 3 2074 209 228 39 115 chr1 195167426 195167530 -2027902 - L2c LINE L2 -16 3371 3276 3 2074 413 223 10 21 chr1 195170632 195170728 -2024704 - ORR1C2 LTR MaLR 0 378 284 3 2074 754 105 15 82 chr1 195170705 195170840 -2024592 + B1_Mur4 SINE Alu 6 131 -19 3 2074 375 78 0 0 chr1 195170852 195170903 -2024529 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 2074 1010 152 60 51 chr1 195170942 195171157 -2024275 - ORR1C2 LTR MaLR -167 217 1 3 2074 423 0 0 0 chr1 195171780 195171827 -2023605 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 2074 904 67 5 58 chr1 195171861 195172051 -2023381 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 2074 486 281 0 37 chr1 195172067 195172174 -2023258 - PB1D10 SINE Alu -9 108 6 3 2074 225 355 10 70 chr1 195172099 195172199 -2023233 - MT2B2 LTR ERVL -346 238 145 3 2074 504 0 0 0 chr1 195173702 195173758 -2021674 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 2074 286 357 89 26 chr1 195175199 195175389 -2020043 + MER58A DNA MER1_type 4 205 -19 3 2074 387 0 0 0 chr1 195176105 195176148 -2019284 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 2074 432 287 164 0 chr1 195177573 195177695 -2017737 - ID_B1 SINE B4 -2 222 81 3 2074 361 179 0 0 chr1 195177791 195177847 -2017585 - B3 SINE B2 -160 56 1 3 2074 441 226 32 0 chr1 195177851 195177944 -2017488 - ID_B1 SINE B4 -128 96 1 3 2074 196 191 15 31 chr1 195178403 195178468 -2016964 + CT-rich Low_complexity Low_complexity 2 65 0 3 2074 438 20 0 0 chr1 195178472 195178523 -2016909 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 2074 1640 198 64 15 chr1 195179758 195180137 -2015295 + MTD LTR MaLR 19 414 -5 3 2074 285 146 0 0 chr1 195180690 195180738 -2014694 + Lx2 LINE L1 6593 6640 -360 3 2074 1447 116 37 0 chr1 195180740 195180955 -2014477 + Lx2 LINE L1 6775 6997 0 3 2074 1174 246 48 17 chr1 195182699 195183005 -2012427 + MTEb LTR MaLR 67 377 -2 3 2074 366 99 24 24 chr1 195183101 195183184 -2012248 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3 2074 586 243 48 41 chr1 195183295 195183441 -2011991 - B1F2 SINE Alu -1 148 2 3 2074 651 284 24 48 chr1 195183504 195183519 -2011913 - B3 SINE B2 -13 203 189 3 2074 315 0 0 0 chr1 195183519 195183554 -2011878 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2074 682 284 24 48 chr1 195183554 195183745 -2011687 - B3A SINE B2 -28 188 2 3 2074 413 310 38 15 chr1 195183745 195183876 -2011556 + MER20 DNA MER1_type 53 186 -33 3 2074 24 53 0 0 chr1 195184291 195184329 -2011103 + AT_rich Low_complexity Low_complexity 1 38 0 3 2074 274 336 28 9 chr1 195186439 195186547 -2008885 - PB1 SINE Alu -17 110 1 3 2074 805 296 94 15 chr1 195189397 195189664 -2005768 + B4 SINE B4 5 292 0 3 2074 373 303 53 143 chr1 195190944 195191210 -2004222 - L2c LINE L2 0 3387 3146 3 2074 331 347 73 25 chr1 195193815 195194019 -2001413 - MamRep137 DNA TcMar? -90 354 141 3 2074 315 0 0 0 chr1 195195151 195195186 -2000246 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2074 180 0 0 0 chr1 195197005 195197025 -1998407 + (TCTCC)n Simple_repeat Simple_repeat 3 22 0 3 2074 1731 215 59 27 chr1 195197648 195198054 -1997378 - MTD LTR MaLR 0 419 1 3 2074 203 261 151 54 chr1 195198145 195198238 -1997194 + MIR SINE MIR 36 137 -71 3 2074 1053 240 139 34 chr1 195198356 195198680 -1996752 + MLT1A0 LTR MaLR 8 365 0 3 2074 1080 229 215 7 chr1 195198984 195199291 -1996141 - MTE2b LTR MaLR -8 371 1 3 2074 328 225 0 40 chr1 195199558 195199632 -1995800 - ORR1A3 LTR MaLR -8 362 292 3 2074 1667 157 66 20 chr1 195199619 195200028 -1995404 - ORR1A3 LTR MaLR -8 386 1 3 2074 1097 239 130 14 chr1 195200028 195200303 -1995129 - ORR1D2 LTR MaLR -63 307 1 3 2074 647 140 6 19 chr1 195202195 195202355 -1993077 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 2074 941 235 0 0 chr1 195203744 195203923 -1991509 - B3A SINE B2 -18 180 2 3 2074 2901 59 5 13 chr1 195203955 195204335 -1991097 - MTB_Mm LTR MaLR 0 407 31 3 2074 306 0 0 0 chr1 195204335 195204369 -1991063 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 2074 2136 149 55 11 chr1 195204633 195204998 -1990434 + ORR1C2 LTR MaLR 1 381 -3 3 2074 225 0 0 0 chr1 195205594 195205619 -1989813 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 3 2074 273 128 0 0 chr1 195206770 195206809 -1988623 - ID_B1 SINE B4 -56 168 130 3 2074 451 258 224 7 chr1 195206811 195206963 -1988469 + MTE2b LTR MaLR 3 187 -192 3 2074 860 256 0 0 chr1 195207103 195207263 -1988169 + MTE2b LTR MaLR 209 368 -11 3 2074 308 236 0 0 chr1 195207268 195207323 -1988109 - ID_B1 SINE B4 -90 134 80 3 2074 563 290 33 37 chr1 195207772 195207987 -1987445 + MLT1C LTR MaLR 171 384 -83 3 2074 1347 186 197 11 chr1 195208642 195208961 -1986471 - MTD LTR MaLR -51 368 1 3 2074 405 116 0 0 chr1 195209576 195209645 -1985787 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 2074 406 271 48 32 chr1 195210132 195210258 -1985174 + MIR SINE MIR 13 140 -122 3 2074 434 248 116 33 chr1 195210258 195210379 -1985053 + RSINE1 SINE B4 3 133 -32 3 2074 196 302 0 0 chr1 195210416 195210469 -1984963 + MIR SINE MIR 136 188 -74 3 2074 566 277 11 17 chr1 195210520 195210700 -1984732 + HAL1-2a_MD LINE L1 2344 2522 -502 3 2074 553 296 17 56 chr1 195211277 195211456 -1983976 + B4A SINE B4 7 178 -114 3 2074 225 265 0 0 chr1 195211541 195211624 -1983808 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 2074 226 256 144 0 chr1 195211631 195211756 -1983676 - RLTR22_Mus LTR ERVK -396 1412 1270 3 2074 408 289 0 0 chr1 195211801 195211981 -1983451 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 2074 201 294 0 0 chr1 195211997 195212089 -1983343 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 2074 342 252 46 55 chr1 195212816 195212925 -1982507 - PB1D10 SINE Alu -8 109 2 3 2074 237 225 79 66 chr1 195213908 195213984 -1981448 - MER5A1 DNA MER1_type -89 77 1 3 2074 185 211 19 0 chr1 195213992 195214044 -1981388 + GA-rich Low_complexity Low_complexity 2 54 0 3 2074 534 208 0 0 chr1 195214085 195214229 -1981203 + (TG)n Simple_repeat Simple_repeat 1 144 0 3 2074 324 0 0 0 chr1 195214316 195214352 -1981080 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 2074 223 244 38 25 chr1 195215135 195215215 -1980217 + C-rich Low_complexity Low_complexity 3 83 0 3 2074 228 319 117 70 chr1 195216866 195216994 -1978438 + ORR1D2 LTR MaLR 42 175 -195 3 2074 212 309 103 0 chr1 195217647 195217715 -1977717 + MIRc SINE MIR 116 190 -78 3 2074 658 280 0 0 chr1 195218282 195218425 -1977007 + B1F SINE Alu 1 143 -6 3 2074 26 0 0 0 chr1 195218425 195218451 -1976981 + AT_rich Low_complexity Low_complexity 1 26 0 3 2074 657 215 150 17 chr1 195218572 195218752 -1976680 - B3 SINE B2 -3 213 10 3 2074 21 0 0 0 chr1 195218772 195218793 -1976639 + AT_rich Low_complexity Low_complexity 1 21 0 3 2074 1473 63 21 5 chr1 195219010 195219200 -1976232 - B2_Mm2 SINE B2 -1 194 2 3 2074 978 277 67 52 chr1 195219223 195219566 -1975866 - ORR1E LTR MaLR -10 349 2 3 2074 2453 282 90 33 chr1 195219578 195220888 -1974544 - Charlie2a DNA MER1_type -645 2216 833 3 2074 200 220 32 48 chr1 195220981 195221043 -1974389 + CT-rich Low_complexity Low_complexity 4 64 0 3 2074 257 203 59 30 chr1 195221088 195221168 -1974264 + MIR SINE MIR 80 164 -112 3 2074 328 198 10 131 chr1 195221734 195221759 -1973673 - ORR1E LTR MaLR -3 356 340 3 2074 219 36 0 0 chr1 195221759 195221787 -1973645 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 2074 2572 143 8 8 chr1 195221787 195222188 -1973244 - MTC LTR MaLR -20 401 1 3 2074 27 0 0 0 chr1 195222578 195222605 -1972827 + AT_rich Low_complexity Low_complexity 1 27 0 3 2074 218 327 127 33 chr1 195222764 195223039 -1972393 - L2 LINE L2 -454 2965 2665 3 2074 2176 145 80 0 chr1 195224370 195224735 -1970697 + ORR1B1 LTR MaLR 1 394 0 3 2074 1063 282 120 9 chr1 195225706 195226258 -1969174 + L1MCa LINE L1 1244 1856 -4652 3 2074 827 203 117 5 chr1 195226329 195226517 -1968915 + ID_B1 SINE B4 7 215 -9 3 2074 240 324 138 9 chr1 195226739 195226848 -1968584 + RMER15 LTR ERVL 300 422 -153 3 2074 180 0 0 0 chr1 195226884 195226904 -1968528 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 2074 270 0 0 0 chr1 195227831 195227861 -1967571 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 2074 561 30 0 0 chr1 195227861 195227927 -1967505 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 2074 492 286 16 0 chr1 195228487 195228613 -1966819 + RMER15 LTR ERVL 434 561 -14 3 2074 942 213 210 11 chr1 195229553 195229905 -1965527 - Lx9 LINE L1 -6 7638 7217 3 2074 1583 143 62 85 chr1 195229914 195230303 -1965129 + RMER17C LTR ERVK 1 380 -30 3 2074 444 262 146 13 chr1 195230308 195230459 -1964973 - Lx9 LINE L1 -499 7145 6975 3 2074 430 274 117 31 chr1 195230530 195230658 -1964774 + MER58B DNA MER1_type 1 139 -202 3 2074 436 163 16 70 chr1 195231360 195231545 -1963887 + G-rich Low_complexity Low_complexity 3 177 0 3 2074 250 324 213 23 chr1 195231594 195231768 -1963664 - L2 LINE L2 -405 3014 2808 3 2074 306 284 56 47 chr1 195231805 195231912 -1963520 + B4A SINE B4 74 181 -111 3 2074 375 304 20 0 chr1 195231822 195231924 -1963508 + PB1D10 SINE Alu 7 110 -7 3 2074 412 253 151 16 chr1 195231933 195232118 -1963314 + ID_B1 SINE B4 2 211 -13 3 2074 370 201 12 0 chr1 195233573 195233644 -1961788 - PB1D10 SINE Alu -49 68 10 3 2074 512 294 138 25 chr1 195233657 195233939 -1961493 + MLT1G3 LTR MaLR 110 423 -172 3 2074 246 62 0 0 chr1 195234272 195234304 -1961128 + (CG)n Simple_repeat Simple_repeat 2 33 0 3 2074 189 0 0 0 chr1 195234304 195234324 -1961108 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 2074 1489 256 31 0 chr1 195234398 195234749 -1960683 - MTE2b LTR MaLR 0 379 18 3 2074 438 335 46 66 chr1 195234819 195235123 -1960309 + ORR1E LTR MaLR 56 353 -6 3 2074 279 298 284 24 chr1 195236252 195236632 -1958800 - L1M5 LINE L1 -297 5827 5349 3 2074 532 306 39 56 chr1 195236678 195236934 -1958498 - MLT1C LTR MaLR -2 465 155 4 2074 300 311 14 0 chr1 195237394 195237468 -1957964 + ID4 SINE ID 6 80 -3 4 2074 588 109 27 18 chr1 195237562 195237674 -1957758 + CT-rich Low_complexity Low_complexity 3 115 0 4 2074 787 239 130 5 chr1 195237686 195237871 -1957561 - ID_B1 SINE B4 -1 223 16 4 2074 201 360 87 16 chr1 195238524 195238651 -1956781 + MIRb SINE MIR 23 158 -110 4 2074 414 0 0 0 chr1 195239170 195239216 -1956216 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 2074 342 0 0 0 chr1 195239216 195239253 -1956179 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 2074 245 320 110 85 chr1 195243076 195243240 -1952192 + MLT1N2 LTR MaLR 355 522 -40 4 2074 303 292 49 24 chr1 195243246 195243369 -1952063 - LTR33A LTR ERVL -14 506 381 4 2074 308 286 49 25 chr1 195243444 195243566 -1951866 - LTR33A LTR ERVL -14 506 382 4 2074 414 0 0 0 chr1 195245176 195245222 -1950210 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 2074 320 273 33 20 chr1 195245928 195246081 -1949351 + CT-rich Low_complexity Low_complexity 5 159 0 4 2074 231 261 135 87 chr1 195246144 195246270 -1949162 + MLT1C LTR MaLR 6 137 -330 4 2074 303 28 0 0 chr1 195246680 195246716 -1948716 + (CAA)n Simple_repeat Simple_repeat 1 36 0 4 2074 1057 258 50 112 chr1 195248605 195248892 -1946540 + MTE2b LTR MaLR 3 265 -114 4 2074 372 97 0 0 chr1 195248892 195248954 -1946478 + (CTG)n Simple_repeat Simple_repeat 2 63 0 4 2074 1057 258 50 112 chr1 195248954 195249068 -1946364 + MTE2b LTR MaLR 266 378 -1 4 2074 310 144 91 20 chr1 195249113 195249313 -1946119 + (GGCTG)n Simple_repeat Simple_repeat 1 214 0 4 2074 993 244 9 14 chr1 195250662 195250878 -1944554 + B3 SINE B2 2 216 0 4 2074 1174 203 206 16 chr1 195250932 195251056 -1944376 - ORR1D2 LTR MaLR -1 369 246 4 2074 420 20 0 0 chr1 195251056 195251105 -1944327 + (CAGG)n Simple_repeat Simple_repeat 4 52 0 4 2074 1174 203 206 16 chr1 195251105 195251290 -1944142 - ORR1D2 LTR MaLR -125 245 1 4 2074 4555 148 60 22 chr1 195251449 195252179 -1943253 + MTC-int LTR MaLR 257 1021 -237 4 2074 224 30 0 29 chr1 195252179 195252213 -1943219 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 2074 4555 148 60 22 chr1 195252213 195252305 -1943127 + MTC-int LTR MaLR 1022 1110 -148 4 2074 797 292 54 0 chr1 195252418 195252603 -1942829 + ID_B1 SINE B4 30 224 0 4 2074 291 225 288 0 chr1 195254194 195254305 -1941127 - RCHARR1 DNA MER1_type 0 974 832 4 2074 2925 219 108 25 chr1 195254360 195255184 -1940248 - RCHARR1 DNA MER1_type -80 894 3 4 2074 248 320 0 0 chr1 195255688 195255766 -1939666 + GA-rich Low_complexity Low_complexity 3 80 0 4 2074 333 0 0 0 chr1 195255769 195255806 -1939626 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 2074 504 291 109 84 chr1 195255841 195256126 -1939306 + B4A SINE B4 1 292 0 4 2074 1079 223 178 6 chr1 195257447 195257767 -1937665 + MTE2a LTR MaLR 1 375 -4 4 2074 190 281 152 19 chr1 195258089 195258194 -1937238 + MIRb SINE MIR 29 147 -121 4 2074 258 354 74 46 chr1 195259116 195259332 -1936100 - MIR SINE MIR -40 222 1 4 2074 317 370 58 0 chr1 195260668 195260806 -1934626 + MER117 DNA MER1_type 52 197 0 4 2074 464 196 0 89 chr1 195262136 195262248 -1933184 - B3A SINE B2 -96 102 1 4 2074 297 304 9 45 chr1 195262537 195262657 -1932775 - MIRb SINE MIR -99 163 53 4 2074 587 316 66 22 chr1 195262961 195263281 -1932151 + MER63D DNA AcHobo 58 391 -670 4 2074 818 287 118 36 chr1 195263542 195263846 -1931586 + MER2 DNA MER2_type 17 345 0 4 2074 245 312 52 67 chr1 195265365 195265499 -1929933 + MIRb SINE MIR 121 252 -16 4 2074 213 257 26 26 chr1 195265652 195265728 -1929704 + B4A SINE B4 1 76 -216 4 2074 369 275 105 77 chr1 195265769 195266029 -1929403 + MTE2a LTR MaLR 3 261 -118 4 2074 643 289 68 24 chr1 195265996 195266248 -1929184 + MT2A LTR ERVL 185 447 -86 4 2074 243 0 0 0 chr1 195268068 195268095 -1927337 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 2074 268 323 124 75 chr1 195268567 195268768 -1926664 + Charlie1a DNA MER1_type 25 235 -1220 4 2074 666 256 18 24 chr1 195268806 195268970 -1926462 + ID_B1 SINE B4 14 176 -48 4 2074 344 231 34 119 chr1 195268885 195269003 -1926429 + PB1D10 SINE Alu 9 116 -1 4 2074 268 354 107 114 chr1 195269054 195269379 -1926053 + Charlie1a DNA MER1_type 322 644 -811 4 2074 909 216 54 5 chr1 195269379 195269584 -1925848 - B3 SINE B2 -1 215 1 4 2074 268 354 107 114 chr1 195269584 195269679 -1925753 + Charlie1a DNA MER1_type 645 739 -716 4 2074 305 261 110 25 chr1 195269665 195269783 -1925649 + Charlie1a DNA MER1_type 915 1042 -413 4 2074 422 291 0 0 chr1 195269783 195269900 -1925532 - PB1D10 SINE Alu 0 117 1 4 2074 509 246 148 11 chr1 195269937 195270126 -1925306 - B3 SINE B2 0 216 2 4 2074 21 0 0 0 chr1 195270128 195270149 -1925283 + AT_rich Low_complexity Low_complexity 1 21 0 4 2074 1578 162 5 128 chr1 195270153 195270528 -1924904 + ORR1A4 LTR MaLR 1 329 0 4 2074 753 253 26 10 chr1 195270549 195270741 -1924691 - ORR1E LTR MaLR -160 199 5 4 2074 657 242 34 0 chr1 195271026 195271173 -1924259 + MLT1A0 LTR MaLR 4 155 -210 4 2074 585 337 60 70 chr1 195271173 195271457 -1923975 + B4 SINE B4 1 281 -11 4 2074 342 134 0 0 chr1 195271515 195271582 -1923850 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 4 2074 200 219 0 0 chr1 195271763 195271804 -1923628 + CT-rich Low_complexity Low_complexity 1 41 0 4 2074 410 312 208 35 chr1 195271806 195271832 -1923600 - HAL1 LINE L1 -1362 1145 1122 4 2074 797 239 61 19 chr1 195271832 195272045 -1923387 - ID_B1 SINE B4 -1 223 2 4 2074 410 312 208 35 chr1 195272045 195272648 -1922784 - HAL1 LINE L1 -1386 1121 407 4 2074 1373 219 173 6 chr1 195272957 195273315 -1922117 + MTD LTR MaLR 2 419 0 4 2074 384 306 51 77 chr1 195273355 195273550 -1921882 + ORR1E LTR MaLR 45 234 -125 4 2074 559 304 83 30 chr1 195273630 195273932 -1921500 - HAL1 LINE L1 -2169 338 21 4 2074 216 304 0 0 chr1 195274410 195274466 -1920966 + MIR3 SINE MIR 101 156 -52 4 2074 569 306 61 0 chr1 195274530 195274677 -1920755 + B3A SINE B2 9 164 -34 4 2074 821 251 37 14 chr1 195274665 195274678 -1920754 - B4A SINE B4 -2 290 278 4 2074 315 0 0 0 chr1 195274678 195274713 -1920719 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 2074 821 251 37 14 chr1 195274713 195274917 -1920515 - B4A SINE B4 -15 277 69 4 2074 1766 213 73 15 chr1 195274980 195275376 -1920056 + MTD LTR MaLR 1 419 0 4 2074 238 211 158 0 chr1 195275385 195275442 -1919990 - B4A SINE B4 -207 85 20 4 2074 195 167 0 0 chr1 195276439 195276481 -1918951 + T-rich Low_complexity Low_complexity 1 42 0 4 2074 378 0 0 0 chr1 195277222 195277264 -1918168 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 2074 220 261 0 0 chr1 195277866 195277912 -1917520 + C-rich Low_complexity Low_complexity 4 49 0 4 2074 379 283 164 52 chr1 195277954 195278241 -1917191 - MLT1C LTR MaLR -14 376 58 4 2074 228 309 99 50 chr1 195279008 195279129 -1916303 - LTR48B LTR ERV1 -48 739 615 4 2074 292 317 93 28 chr1 195279129 195279236 -1916196 - PB1D10 SINE Alu -3 114 1 4 2074 228 309 99 50 chr1 195279236 195279335 -1916097 - LTR48B LTR ERV1 -173 614 508 4 2074 613 233 192 6 chr1 195279383 195279560 -1915872 - ID_B1 SINE B4 -7 217 8 4 2074 289 304 65 16 chr1 195279568 195279750 -1915682 - LTR48B LTR ERV1 -493 294 23 4 2074 256 260 68 29 chr1 195280486 195280589 -1914843 - MER5A1 DNA MER1_type -14 152 46 4 2074 258 336 86 90 chr1 195281405 195281706 -1913726 + ORR1D2 LTR MaLR 71 370 0 4 2074 410 307 9 119 chr1 195281811 195282029 -1913403 - MIR SINE MIR 0 262 69 4 2074 1248 290 3 24 chr1 195283707 195283997 -1911435 - B4 SINE B4 -1 291 8 4 2074 351 0 0 0 chr1 195284679 195284718 -1910714 + (TTG)n Simple_repeat Simple_repeat 1 39 0 4 2074 1104 8 0 0 chr1 195285128 195285253 -1910179 + (TCC)n Simple_repeat Simple_repeat 1 125 0 4 2074 354 208 13 25 chr1 195285507 195285586 -1909846 - PB1D7 SINE Alu 0 120 43 4 2074 803 332 63 8 chr1 195285615 195285867 -1909565 + B4 SINE B4 7 272 -20 4 2074 430 285 152 25 chr1 195286896 195287094 -1908338 + ID_B1 SINE B4 1 223 -1 4 2074 236 392 0 8 chr1 195288015 195288141 -1907291 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 2074 238 315 203 8 chr1 195288262 195288390 -1907042 - RSINE1 SINE B4 0 165 13 4 2074 206 325 63 25 chr1 195288400 195288479 -1906953 - L4 LINE RTE -919 1110 1029 4 2074 309 312 0 0 chr1 195288850 195288914 -1906518 + tRNA-Ala-GCA tRNA tRNA 3 66 -9 4 2074 282 116 0 0 chr1 195288930 195288973 -1906459 + (CAGC)n Simple_repeat Simple_repeat 4 46 0 4 2074 462 219 0 0 chr1 195289288 195289439 -1905993 + (TG)n Simple_repeat Simple_repeat 1 151 0 4 2074 639 286 105 76 chr1 195289439 195289531 -1905901 - B4 SINE B4 0 292 213 4 2074 387 0 0 0 chr1 195289531 195289574 -1905858 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 2074 639 286 105 76 chr1 195289574 195289757 -1905675 - B4 SINE B4 -80 212 9 4 2074 368 324 86 67 chr1 195289972 195290240 -1905192 - RMER5 LTR ERV1 -92 442 170 4 2074 234 0 0 0 chr1 195290502 195290528 -1904904 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 2074 3641 110 30 23 chr1 195291222 195291782 -1903650 + LTRIS2 LTR ERV1 1 564 0 4 2074 215 279 102 0 chr1 195291809 195291896 -1903536 + MIR SINE MIR 110 200 -62 4 2074 216 0 0 0 chr1 195291989 195292013 -1903419 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 4 2074 532 211 113 44 chr1 195292064 195292223 -1903209 + MIRc SINE MIR 72 241 -27 4 2074 228 35 0 0 chr1 195292889 195292918 -1902514 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 2074 1091 31 0 0 chr1 195292925 195293055 -1902377 - B1_Mm SINE Alu -1 146 17 4 2074 324 0 0 0 chr1 195293473 195293509 -1901923 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 2074 5430 29 0 0 chr1 195293539 195294157 -1901275 - L1Md_F2 LINE L1 -12 6570 5953 4 2074 420 20 0 0 chr1 195294187 195294236 -1901196 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 4 2074 311 311 112 53 chr1 195295827 195296014 -1899418 + MLT1A0 LTR MaLR 13 210 -155 4 2074 355 253 76 11 chr1 195296000 195296092 -1899340 - RSINE1 SINE B4 -60 105 8 4 2074 5173 11 0 0 chr1 195296120 195296685 -1898747 - L1Md_T LINE L1 0 6582 6018 4 259 11127 19 0 0 chr1 195296685 195298018 -1897414 + L1Md_T LINE L1 4610 5942 -640 4 2075 2666 35 0 6 chr1 195298194 195298511 -1896921 + L1Md_T LINE L1 6256 6570 -14 4 2075 25 65 0 0 chr1 195298578 195298624 -1896808 + AT_rich Low_complexity Low_complexity 1 46 0 5 2075 185 0 40 0 chr1 195298660 195298685 -1896747 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 2075 2371 133 93 5 chr1 195298758 195299144 -1896288 - MTC LTR MaLR -1 420 1 5 2075 5589 154 96 69 chr1 195299144 195299318 -1896114 - MTC-int LTR MaLR 0 1258 1080 5 2075 203 0 0 36 chr1 195299318 195299346 -1896086 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 5 2075 5589 154 96 69 chr1 195299346 195299378 -1896054 - MTC-int LTR MaLR -179 1079 1053 5 2075 1165 75 7 0 chr1 195299378 195299524 -1895908 + B1_Mm SINE Alu 1 147 0 5 2075 5589 154 96 69 chr1 195299524 195300540 -1894892 - MTC-int LTR MaLR -206 1052 2 5 2075 1027 111 7 0 chr1 195300599 195300743 -1894689 + B1_Mus1 SINE Alu 2 146 -2 5 2075 1062 165 58 16 chr1 195300755 195301010 -1894422 - MTC LTR MaLR -43 378 1 5 2075 25 31 0 0 chr1 195301897 195301929 -1893503 + AT_rich Low_complexity Low_complexity 1 32 0 5 2075 899 210 181 20 chr1 195302211 195302459 -1892973 - MTEa LTR MaLR -86 293 6 5 2075 495 319 112 5 chr1 195303407 195303612 -1891820 - MLT1G3 LTR MaLR 0 595 369 5 2075 276 324 29 10 chr1 195303755 195303858 -1891574 - MLT1G3 LTR MaLR -219 376 272 5 2075 1064 230 12 12 chr1 195304463 195304705 -1890727 + Tigger5 DNA MER2_type 2150 2391 -15 5 2075 1011 241 172 28 chr1 195304914 195305234 -1890198 - MTEb LTR MaLR -12 367 2 5 2075 321 135 0 0 chr1 195306529 195306581 -1888851 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 5 2075 647 213 16 54 chr1 195306598 195306727 -1888705 - B1F2 SINE Alu -25 124 1 5 2075 184 378 62 14 chr1 195307461 195307606 -1887826 - MIRb SINE MIR -28 240 89 5 2075 261 0 0 0 chr1 195307957 195307986 -1887446 + (T)n Simple_repeat Simple_repeat 1 29 0 5 2075 318 353 51 62 chr1 195308338 195308516 -1886916 - Charlie17a DNA MER1_type -37 182 7 5 2075 353 316 26 0 chr1 195308709 195308826 -1886606 - MLT1A0 LTR MaLR -41 324 205 5 2075 240 292 15 0 chr1 195309107 195309172 -1886260 + CT-rich Low_complexity Low_complexity 3 68 0 5 2075 359 229 52 11 chr1 195309172 195309270 -1886162 - B1F SINE Alu -22 98 1 5 2075 249 286 93 51 chr1 195309270 195309290 -1886142 - B4A SINE B4 -105 187 65 5 2075 343 270 36 0 chr1 195310346 195310457 -1884975 + (CATA)n Simple_repeat Simple_repeat 2 116 0 5 2075 997 106 0 41 chr1 195312466 195312613 -1882819 + B1_Mus1 SINE Alu 2 142 -6 5 2075 198 0 0 0 chr1 195312614 195312636 -1882796 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 2075 222 128 0 0 chr1 195312638 195312677 -1882755 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 2075 470 196 90 92 chr1 195312678 195312840 -1882592 - B4A SINE B4 0 292 139 5 2075 389 259 232 41 chr1 195313589 195313835 -1881597 + RMER10A LTR ERVL 122 414 -28 5 2075 372 263 59 5 chr1 195313851 195313978 -1881454 - B4A SINE B4 -83 141 1 5 2075 405 0 0 0 chr1 195314684 195314729 -1880703 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 2075 386 169 23 46 chr1 195315215 195315301 -1880131 + ORR1D2 LTR MaLR 217 300 -70 5 2075 865 168 13 0 chr1 195315301 195315450 -1879982 + MTC LTR MaLR 1 151 -270 5 2075 2832 138 27 12 chr1 195315428 195315911 -1879521 + RLTR28 LTR ERVL 35 524 0 5 2075 1160 68 0 0 chr1 195315937 195316085 -1879347 + B1_Mus1 SINE Alu 1 148 0 5 2075 1529 129 4 22 chr1 195316115 195316345 -1879087 + MTC LTR MaLR 196 421 0 5 2075 372 167 42 0 chr1 195316345 195316417 -1879015 + ORR1D2 LTR MaLR 296 370 0 5 2075 195 204 0 0 chr1 195316447 195316491 -1878941 + T-rich Low_complexity Low_complexity 1 44 0 5 2075 295 305 0 0 chr1 195317018 195317100 -1878332 + ERVL-B4-int LTR ERVL 4282 4363 -1304 5 2075 364 377 49 0 chr1 195317450 195317633 -1877799 + ERVL-B4-int LTR ERVL 4810 5001 -713 5 2075 430 377 164 31 chr1 195318019 195318337 -1877095 + LTR16A LTR ERVL 6 365 -86 5 2075 686 254 96 53 chr1 195318420 195318648 -1876784 - RLTR15 LTR ERVK -9 350 113 5 2075 486 0 0 0 chr1 195318648 195318702 -1876730 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 2075 686 254 96 53 chr1 195318702 195318776 -1876656 - RLTR15 LTR ERVK -247 112 36 5 2075 805 135 30 0 chr1 195318775 195318908 -1876524 - RMER15 LTR ERVL -438 137 1 5 2075 5400 41 0 0 chr1 195319266 195319898 -1875534 + L1Md_T LINE L1 5951 6582 0 5 2075 1400 186 140 44 chr1 195319974 195320317 -1875115 + RMER15 LTR ERVL 165 540 -35 5 2075 873 279 17 14 chr1 195320537 195320918 -1874514 - L1MA4 LINE L1 -290 6007 5634 5 2075 2956 207 14 35 chr1 195321089 195321664 -1873768 - Lx5 LINE L1 -3 7047 6485 5 2075 624 275 55 0 chr1 195322228 195322410 -1873022 - MLT1B LTR MaLR -57 333 142 5 2075 687 74 21 59 chr1 195322452 195322639 -1872793 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 2075 296 134 50 20 chr1 195322665 195322764 -1872668 + (TG)n Simple_repeat Simple_repeat 1 102 0 5 2075 538 263 137 27 chr1 195322769 195323031 -1872401 - B4A SINE B4 0 292 2 5 2075 415 200 61 43 chr1 195323031 195323146 -1872286 - MLT1B LTR MaLR -266 124 8 5 2075 240 270 65 33 chr1 195323363 195323455 -1871977 - RLTR24 LTR ERV1 -434 95 1 5 2075 333 277 94 54 chr1 195323892 195324041 -1871391 - HAL1-3A_ME LINE L1 -419 2439 2285 5 2075 761 30 87 52 chr1 195324056 195324184 -1871248 + polypyrimidine Low_complexity Low_complexity 46 180 0 5 2075 1620 0 0 0 chr1 195324184 195324364 -1871068 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 5 2075 761 30 87 52 chr1 195324364 195324408 -1871024 + polypyrimidine Low_complexity Low_complexity 2 45 0 5 2075 423 183 0 0 chr1 195324400 195324482 -1870950 + CT-rich Low_complexity Low_complexity 1 82 0 5 2075 309 282 99 119 chr1 195325677 195325878 -1869554 - MER34A1 LTR ERV1 -386 201 5 5 2075 576 207 105 24 chr1 195325954 195326078 -1869354 - RSINE1 SINE B4 -29 136 3 5 2075 260 70 0 23 chr1 195326101 195326145 -1869287 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 2075 315 261 34 0 chr1 195326159 195326247 -1869185 + MER5A1 DNA MER1_type 41 131 -35 5 2075 442 223 34 113 chr1 195327156 195327333 -1868099 + HAL1-2a_MD LINE L1 2346 2508 -516 5 2075 448 239 37 103 chr1 195327301 195327708 -1867724 + HAL1-2a_MD LINE L1 2327 2507 -517 5 2075 350 266 52 59 chr1 195327694 195327830 -1867602 + HAL1-2a_MD LINE L1 2358 2492 -532 5 2075 437 213 73 85 chr1 195327833 195327997 -1867435 + HAL1-2a_MD LINE L1 2346 2507 -517 5 2075 31 58 0 0 chr1 195328120 195328172 -1867260 + AT_rich Low_complexity Low_complexity 1 52 0 5 2075 740 288 12 18 chr1 195328244 195328410 -1867022 - B3 SINE B2 -50 166 2 5 2075 246 217 49 16 chr1 195328765 195328826 -1866606 - RMER15 LTR ERVL -91 484 422 5 2075 283 306 74 7 chr1 195329422 195329557 -1865875 - ORR1E LTR MaLR -213 146 3 5 2075 383 261 8 0 chr1 195329785 195329879 -1865553 - MIRc SINE MIR -33 175 81 5 2075 225 0 0 0 chr1 195330688 195330713 -1864719 + (A)n Simple_repeat Simple_repeat 1 25 0 5 2075 264 91 0 0 chr1 195332640 195332684 -1862748 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 2075 24 67 0 0 chr1 195333140 195333185 -1862247 + AT_rich Low_complexity Low_complexity 1 45 0 5 2075 227 31 0 30 chr1 195336081 195336114 -1859318 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 2075 202 182 0 0 chr1 195337033 195337066 -1858366 + C-rich Low_complexity Low_complexity 4 36 0 5 2075 260 279 25 0 chr1 195339116 195339195 -1856237 + ID4_ SINE ID 1 81 -2 5 2075 228 306 0 0 chr1 195339196 195339258 -1856174 + GA-rich Low_complexity Low_complexity 2 63 0 5 2075 233 213 170 0 chr1 195339258 195339305 -1856127 + ID SINE ID 2 56 -168 5 2075 426 221 0 0 chr1 195339356 195339581 -1855851 + (CA)n Simple_repeat Simple_repeat 1 225 0 5 2075 338 227 47 93 chr1 195339584 195339691 -1855741 + HAL1-3A_ME LINE L1 1976 2077 -781 5 2075 224 302 88 63 chr1 195339730 195339889 -1855543 + L3 LINE CR1 3983 4145 -344 5 2075 248 248 60 11 chr1 195340894 195340989 -1854443 - ID2 SINE ID -49 103 2 5 2075 388 257 0 106 chr1 195341005 195341118 -1854314 - PB1D10 SINE Alu -8 109 9 5 2075 271 279 26 80 chr1 195341431 195341544 -1853888 - L2c LINE L2 -10 3377 3271 5 2075 1130 214 183 15 chr1 195341616 195341910 -1853522 + MTD LTR MaLR 81 405 -14 5 2075 381 278 36 18 chr1 195343271 195343381 -1852051 - PB1D10 SINE Alu 0 117 6 5 2075 216 282 25 37 chr1 195346494 195346575 -1848857 + MIRc SINE MIR 45 124 -144 5 2075 305 306 101 10 chr1 195346636 195346735 -1848697 - PB1D7 SINE Alu 0 120 13 5 2075 920 293 17 38 chr1 195347785 195348076 -1847356 - B4A SINE B4 -6 286 2 5 2075 437 203 96 22 chr1 195349047 195349183 -1846249 + MER5A1 DNA MER1_type 2 147 -19 5 2075 1251 93 0 5 chr1 195350119 195350334 -1845098 + (GGAGA)n Simple_repeat Simple_repeat 1 213 0 5 2075 267 364 0 0 chr1 195351031 195351108 -1844324 + polypyrimidine Low_complexity Low_complexity 2 78 0 5 2075 243 254 0 35 chr1 195351111 195351168 -1844264 - PB1D10 SINE Alu -45 72 18 5 2075 829 279 62 65 chr1 195351443 195351674 -1843758 + B4 SINE B4 48 278 -14 5 2075 207 401 66 0 chr1 195351909 195352076 -1843356 + L2 LINE L2 2321 2498 -921 5 2075 284 149 27 0 chr1 195352630 195352704 -1842728 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 5 2075 360 0 0 0 chr1 195354081 195354121 -1841311 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 2075 990 267 70 27 chr1 195354344 195354602 -1840830 + B4A SINE B4 1 269 -23 5 2075 190 320 154 50 chr1 195354913 195355133 -1840299 + L3 LINE CR1 4041 4283 -206 5 2075 392 316 67 0 chr1 195355422 195355615 -1839817 + L1MB3 LINE L1 5977 6182 -1 5 2075 470 17 17 0 chr1 195355730 195355789 -1839643 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 2075 5088 151 48 8 chr1 195356071 195356927 -1838505 - RMER19B LTR ERVK -12 890 1 5 2075 609 330 48 44 chr1 195356954 195357411 -1838021 - L1ME3B LINE L1 -187 6053 5595 5 2075 226 172 35 0 chr1 195357656 195357714 -1837718 + L1MB3 LINE L1 6017 6076 -107 5 2075 459 0 0 0 chr1 195358477 195358528 -1836904 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 5 2075 642 296 84 15 chr1 195359122 195359324 -1836108 + ID_B1 SINE B4 8 223 -1 5 2075 1529 39 0 0 chr1 195359326 195359504 -1835928 + B2_Mm1a SINE B2 1 178 -15 5 2075 333 0 0 0 chr1 195359505 195359542 -1835890 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 2075 450 0 0 0 chr1 195360096 195360146 -1835286 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 2075 659 277 211 19 chr1 195362501 195362762 -1832670 + MER2 DNA MER2_type 25 335 -10 6 2075 484 322 93 45 chr1 195362869 195363181 -1832251 + MER21B LTR ERV1 211 537 -326 6 2075 408 316 37 15 chr1 195363060 195363195 -1832237 + MER77 LTR ERVL 447 584 -23 6 2075 259 308 81 24 chr1 195363197 195363320 -1832112 + MER21B LTR ERV1 596 725 -138 6 2075 258 32 0 0 chr1 195365928 195365959 -1829473 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 2075 395 275 50 146 chr1 195365992 195366294 -1829138 - B4 SINE B4 -18 274 2 6 2075 411 272 15 60 chr1 195366953 195367086 -1828346 + MIRb SINE MIR 87 213 -55 6 2075 227 256 10 131 chr1 195367416 195367515 -1827917 - B4A SINE B4 -122 170 84 6 2075 261 173 148 0 chr1 195368226 195368307 -1827125 - Lx5 LINE L1 0 7050 6958 6 2075 22 0 0 0 chr1 195369378 195369400 -1826032 + AT_rich Low_complexity Low_complexity 1 22 0 6 2075 304 273 32 16 chr1 195369408 195369531 -1825901 - L1MB8 LINE L1 -6 6172 6048 6 2075 510 336 67 24 chr1 195369603 195369856 -1825576 + MLT1H LTR MaLR 78 341 -208 6 2075 291 300 70 62 chr1 195370838 195370851 -1824581 - B4A SINE B4 -86 206 136 6 2075 501 252 37 0 chr1 195370851 195370958 -1824474 - B1F2 SINE Alu -38 111 1 6 2075 409 240 72 0 chr1 195373190 195373315 -1822117 + HAL1-2a_MD LINE L1 2417 2550 -474 6 2075 223 278 0 0 chr1 195373604 195373658 -1821774 - B1F SINE Alu -29 120 67 6 2075 747 62 0 0 chr1 195374140 195374237 -1821195 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 6 2075 990 156 0 0 chr1 195374239 195374412 -1821020 + CT-rich Low_complexity Low_complexity 3 175 0 6 2075 825 250 92 0 chr1 195374541 195374725 -1820707 - ID_B1 SINE B4 -23 201 1 6 2075 189 295 116 54 chr1 195374969 195375098 -1820334 - MIR SINE MIR -129 139 3 6 2075 483 18 0 0 chr1 195375909 195375965 -1819467 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 2075 369 0 0 0 chr1 195375965 195376005 -1819427 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 2075 200 35 35 0 chr1 195377027 195377056 -1818376 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 2075 391 222 12 0 chr1 195377287 195377368 -1818064 - ID4 SINE ID 0 83 2 6 2075 189 103 77 0 chr1 195377459 195377498 -1817934 + MIRc SINE MIR 80 121 -147 6 2075 1103 68 0 30 chr1 195378946 195379113 -1816319 + (TG)n Simple_repeat Simple_repeat 2 163 0 6 2075 2820 78 37 49 chr1 195379220 195379651 -1815781 - Lx LINE L1 0 6654 6229 6 2075 286 80 40 0 chr1 195379835 195379885 -1815547 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 6 2075 193 89 22 22 chr1 195380034 195380080 -1815352 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 6 2075 273 135 0 0 chr1 195381263 195381315 -1814117 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 2075 180 111 0 0 chr1 195381334 195381361 -1814071 + (TCC)n Simple_repeat Simple_repeat 1 27 0 6 2075 595 285 14 7 chr1 195381821 195381959 -1813473 - B4 SINE B4 -152 140 2 6 2075 235 236 85 53 chr1 195383348 195383442 -1811990 - ORR1A3-int LTR MaLR -422 1541 1445 6 2075 237 338 65 0 chr1 195383495 195383572 -1811860 + LTR81C LTR ERV1? 837 918 -235 6 2075 408 198 25 0 chr1 195383572 195383653 -1811779 + G-rich Low_complexity Low_complexity 2 84 0 6 2075 870 149 0 0 chr1 195383653 195383801 -1811631 + (GAA)n Simple_repeat Simple_repeat 3 150 0 6 2075 313 325 9 17 chr1 195385340 195385456 -1809976 + GA-rich Low_complexity Low_complexity 3 117 0 6 2075 1163 244 99 31 chr1 195386742 195387064 -1808368 - MTE2b LTR MaLR 0 379 36 6 2075 522 287 166 54 chr1 195387067 195387435 -1807997 + MLT2D LTR ERVL 3 411 -3 6 2075 381 43 0 0 chr1 195387638 195387685 -1807747 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 6 2075 213 227 0 0 chr1 195388133 195388177 -1807255 + (CAAT)n Simple_repeat Simple_repeat 3 46 0 6 2075 201 147 0 0 chr1 195389128 195389162 -1806270 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 6 2075 340 242 71 18 chr1 195389171 195389339 -1806093 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 6 2075 893 120 29 13 chr1 195389339 195389655 -1805777 + (TCTA)n Simple_repeat Simple_repeat 1 321 0 6 2075 303 250 42 0 chr1 195389656 195389752 -1805680 + (TCCA)n Simple_repeat Simple_repeat 2 101 0 6 2075 201 250 29 0 chr1 195389752 195389820 -1805612 - L2c LINE L2 -5 3382 3313 6 2075 1015 90 6 11 chr1 195392734 195392914 -1802518 + (GA)n Simple_repeat Simple_repeat 1 179 0 6 2075 674 317 58 0 chr1 195392968 195393176 -1802256 - B4 SINE B4 -71 221 2 6 2075 332 268 147 35 chr1 195393610 195393752 -1801680 + MER63B DNA AcHobo 272 429 -7 6 2075 259 355 0 53 chr1 195393752 195393865 -1801567 + PB1D10 SINE Alu 1 107 -10 6 2075 309 151 0 0 chr1 195393888 195393941 -1801491 + GA-rich Low_complexity Low_complexity 2 54 0 6 2075 232 338 14 0 chr1 195396315 195396389 -1799043 + GA-rich Low_complexity Low_complexity 2 76 0 6 2075 301 231 43 21 chr1 195396389 195396482 -1798950 + RMER15 LTR ERVL 45 139 -436 6 2075 749 269 93 8 chr1 195396486 195396745 -1798687 + RMER15 LTR ERVL 277 557 -18 6 2075 468 51 0 0 chr1 195397307 195397366 -1798066 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 6 2075 194 277 94 43 chr1 195397887 195398004 -1797428 - MIRm SINE MIR -107 169 47 6 2075 321 279 23 0 chr1 195398950 195398972 -1796460 + B4A SINE B4 63 86 -206 6 2075 392 268 12 0 chr1 195398972 195399054 -1796378 + B1F SINE Alu 1 83 -66 6 2075 268 325 26 0 chr1 195399397 195399511 -1795921 + MLT1D LTR MaLR 23 139 -366 6 2075 231 248 159 56 chr1 195399764 195399871 -1795561 + PB1D9 SINE Alu 1 118 -2 6 2075 260 258 21 41 chr1 195400693 195400790 -1794642 - ORR1E LTR MaLR -8 371 277 6 2075 553 299 124 9 chr1 195400836 195401062 -1794370 - ORR1E LTR MaLR -105 254 3 6 2075 243 0 0 0 chr1 195402679 195402706 -1792726 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 2075 301 306 8 59 chr1 195402895 195402925 -1792507 + MER45A DNA Tip100 27 56 -122 6 2075 332 43 22 0 chr1 195402925 195402971 -1792461 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 2075 301 306 8 59 chr1 195402971 195403058 -1792374 + MER45A DNA Tip100 57 138 -40 6 2075 421 234 256 16 chr1 195403213 195403404 -1792028 + RMER15 LTR ERVL 339 575 0 6 2075 536 197 74 0 chr1 195403832 195403954 -1791478 - B1F SINE Alu -1 148 18 6 2075 552 153 16 33 chr1 195405260 195405442 -1789990 + CT-rich Low_complexity Low_complexity 2 180 0 6 2075 351 0 0 0 chr1 195405744 195405783 -1789649 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 2075 282 95 0 0 chr1 195405783 195405824 -1789608 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 2075 195 42 0 0 chr1 195407058 195407082 -1788350 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 2075 224 256 92 11 chr1 195407789 195407876 -1787556 + MIRb SINE MIR 31 124 -144 6 2075 218 116 23 0 chr1 195407876 195407919 -1787513 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 2075 696 177 17 0 chr1 195407930 195408105 -1787327 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 2075 248 297 0 0 chr1 195408115 195408179 -1787253 - ID4_ SINE ID -19 64 1 6 2075 889 201 115 42 chr1 195408566 195408854 -1786578 - MTD LTR MaLR -16 403 118 6 2075 225 0 0 0 chr1 195409151 195409176 -1786256 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 6 2075 375 319 55 55 chr1 195409185 195409387 -1786045 + MIRb SINE MIR 42 243 -25 6 2075 1170 140 129 5 chr1 195409474 195409675 -1785757 + URR1A DNA MER1_type 1 226 0 6 2075 268 360 64 5 chr1 195410719 195410906 -1784526 - MIR SINE MIR -34 228 31 6 2075 187 409 9 0 chr1 195418502 195418612 -1776820 + MIRc SINE MIR 48 158 -110 6 2075 338 239 42 0 chr1 195419355 195419426 -1776006 - PB1D10 SINE Alu -8 109 36 6 2075 3119 181 128 78 chr1 195419581 195420440 -1774992 + RMER19B LTR ERVK 1 902 0 6 2075 938 228 68 34 chr1 195420971 195421234 -1774198 + MTE2b LTR MaLR 108 379 0 6 2075 683 301 62 0 chr1 195421504 195421763 -1773669 - BLACKJACK DNA AcHobo -850 2094 1820 6 2075 393 316 176 19 chr1 195421844 195422167 -1773265 - MLT1A LTR MaLR 0 374 1 6 2075 2732 164 112 43 chr1 195422367 195422474 -1772958 - Lx9 LINE L1 0 7644 7548 6 2075 2733 140 87 18 chr1 195422474 195422968 -1772464 + RLTR12B LTR ERVK 1 528 0 6 2075 2732 164 112 43 chr1 195422968 195423504 -1771928 - Lx9 LINE L1 -97 7547 6957 6 2075 807 135 35 14 chr1 195423527 195423670 -1771762 - B1_Mur4 SINE Alu -2 148 3 6 2075 596 231 173 26 chr1 195423710 195423901 -1771531 - ID_B1 SINE B4 -4 220 2 6 2075 305 321 81 60 chr1 195423903 195423942 -1771490 - BLACKJACK DNA AcHobo -1453 1491 1456 6 2075 1140 246 91 17 chr1 195423942 195424293 -1771139 - MTEa LTR MaLR 0 379 3 6 2075 305 321 81 60 chr1 195424293 195424551 -1770881 - BLACKJACK DNA AcHobo -1489 1455 1188 6 2075 1565 202 45 3 chr1 195424592 195424924 -1770508 + ORR1D2 LTR MaLR 25 370 0 6 2075 318 278 132 29 chr1 195424924 195425118 -1770314 - BLACKJACK DNA AcHobo -1782 1162 948 6 2075 396 0 0 0 chr1 195425148 195425192 -1770240 + (A)n Simple_repeat Simple_repeat 1 44 0 6 2075 549 286 176 68 chr1 195425531 195425659 -1769773 - BLACKJACK DNA AcHobo -2451 493 368 6 2075 3356 64 12 0 chr1 195425659 195426082 -1769350 - L1_Mus1 LINE L1 -1 6566 6139 6 2075 549 286 176 68 chr1 195426082 195426395 -1769037 - BLACKJACK DNA AcHobo -2577 367 4 6 2075 405 0 0 0 chr1 195426563 195426608 -1768824 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 2075 927 209 39 10 chr1 195426937 195427140 -1768292 - B3 SINE B2 -6 210 2 6 2075 311 208 145 53 chr1 195427142 195427294 -1768138 - Lx9 LINE L1 -2 7642 7477 6 2075 1634 182 92 3 chr1 195427697 195428077 -1767355 + MTD LTR MaLR 1 405 -14 6 2076 284 340 47 65 chr1 195428849 195429063 -1766369 + L2c LINE L2 3178 3387 0 6 2076 2503 154 31 12 chr1 195429747 195430160 -1765272 + MTC LTR MaLR 1 421 0 6 2076 894 213 111 149 chr1 195430715 195431084 -1764348 + ORR1E LTR MaLR 3 357 -2 6 2076 328 315 63 72 chr1 195431351 195431765 -1763667 + HAL1 LINE L1 1167 1576 -931 6 2076 304 282 15 46 chr1 195431869 195431999 -1763433 - MER57C2 LTR ERV1 -1 433 308 6 2076 189 0 0 0 chr1 195432315 195432336 -1763096 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 2076 253 283 42 121 chr1 195433754 195433919 -1761513 + MIRb SINE MIR 41 192 -76 7 2076 405 0 0 0 chr1 195435154 195435199 -1760233 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 2076 223 214 0 18 chr1 195435199 195435256 -1760176 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 2076 275 259 22 11 chr1 195438263 195438353 -1757079 + (TATG)n Simple_repeat Simple_repeat 3 93 0 7 2076 234 0 0 0 chr1 195438355 195438381 -1757051 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 2076 821 249 44 0 chr1 195438727 195438932 -1756500 + ID_B1 SINE B4 3 216 -8 7 2076 467 358 50 21 chr1 195438945 195439225 -1756207 + B4A SINE B4 5 292 0 7 2076 6389 80 6 8 chr1 195439427 195440275 -1755157 - Lx3_Mus LINE L1 0 7009 6164 7 2076 10514 59 9 4 chr1 195440275 195441641 -1753791 + L1_Mur1 LINE L1 3506 4877 -1009 7 2076 212 274 211 9 chr1 195441694 195441808 -1753624 + MIRb SINE MIR 115 251 -17 7 2076 495 225 446 0 chr1 195442367 195442508 -1752924 + B3 SINE B2 1 204 -12 7 2076 875 280 49 11 chr1 195442726 195442990 -1752442 + B4A SINE B4 5 278 -14 7 2076 258 164 0 0 chr1 195443086 195443141 -1752291 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 2076 427 371 0 0 chr1 195443158 195443325 -1752107 + (CA)n Simple_repeat Simple_repeat 1 167 0 7 2076 297 263 0 0 chr1 195443545 195443644 -1751788 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 2076 1421 278 145 8 chr1 195446376 195447033 -1748399 + Kanga1a DNA Tc2 1 747 -7 7 2076 241 350 0 0 chr1 195447995 195448055 -1747377 + ID4 SINE ID 3 62 -21 7 2076 615 237 4 0 chr1 195448069 195448603 -1746829 + (CA)n Simple_repeat Simple_repeat 1 536 0 7 2076 310 114 0 0 chr1 195448603 195448647 -1746785 + HAL1-3A_ME LINE L1 1976 2019 -839 7 2076 534 16 0 0 chr1 195449286 195449349 -1746083 + (TCTCTG)n Simple_repeat Simple_repeat 3 65 0 7 2076 459 210 6 11 chr1 195449349 195449527 -1745905 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 2076 25 31 0 0 chr1 195449694 195449726 -1745706 + AT_rich Low_complexity Low_complexity 1 32 0 7 2076 583 65 92 0 chr1 195451040 195451193 -1744239 + GA-rich Low_complexity Low_complexity 1 167 0 7 2076 827 42 78 0 chr1 195451193 195451359 -1744073 + (GA)n Simple_repeat Simple_repeat 1 179 0 7 2076 720 189 0 0 chr1 195452916 195453064 -1742368 + GA-rich Low_complexity Low_complexity 4 151 0 7 2076 277 299 77 54 chr1 195455469 195455726 -1739706 + LTR16B LTR ERVL 206 463 0 7 2076 258 277 60 0 chr1 195456312 195456395 -1739037 - BC1_Mm scRNA scRNA -64 88 1 7 2076 207 333 37 60 chr1 195457276 195457410 -1738022 - L2c LINE L2 -9 3378 3248 7 2076 206 317 86 40 chr1 195457537 195457688 -1737744 - L2c LINE L2 -925 2494 2337 7 2076 2178 33 18 14 chr1 195457782 195458057 -1737375 + L1Md_F3 LINE L1 6295 6570 -14 7 2076 1484 98 4 26 chr1 195458898 195459129 -1736303 + LSU-rRNA_Hsa rRNA rRNA 4805 5030 -5 7 2076 240 35 0 0 chr1 195459130 195459159 -1736273 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 7 2076 365 77 31 0 chr1 195459554 195459619 -1735813 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 7 2076 570 110 47 14 chr1 195459636 195459784 -1735648 + (TG)n Simple_repeat Simple_repeat 1 153 0 7 2076 317 90 29 29 chr1 195459818 195459887 -1735545 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 2076 382 215 37 0 chr1 195459942 195460077 -1735355 + (TG)n Simple_repeat Simple_repeat 2 141 0 7 2076 283 306 0 0 chr1 195460078 195460150 -1735282 - ID4_ SINE ID -11 72 1 7 2076 29 70 0 0 chr1 195460758 195460815 -1734617 + AT_rich Low_complexity Low_complexity 1 57 0 7 2076 648 0 0 0 chr1 195461766 195461838 -1733594 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 7 2076 255 341 65 11 chr1 195462195 195462287 -1733145 + L3b LINE CR1 375 471 -11 7 2076 196 330 0 78 chr1 195462637 195462739 -1732693 + MIRc SINE MIR 74 167 -101 7 2076 216 0 0 0 chr1 195463912 195463936 -1731496 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 2076 283 171 48 64 chr1 195463961 195464086 -1731346 + (CATAC)n Simple_repeat Simple_repeat 2 124 0 7 2076 248 130 14 42 chr1 195464096 195464168 -1731264 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 2076 451 120 27 18 chr1 195464264 195464374 -1731058 + (CA)n Simple_repeat Simple_repeat 2 112 0 7 2076 201 211 39 0 chr1 195464739 195464791 -1730641 + CT-rich Low_complexity Low_complexity 1 54 0 7 2076 196 170 38 0 chr1 195464818 195464871 -1730561 + CT-rich Low_complexity Low_complexity 3 57 0 7 2076 308 250 104 65 chr1 195465250 195465404 -1730028 - Arthur1A DNA Tip100 -8 169 10 7 2076 310 339 139 0 chr1 195466199 195466314 -1729118 + RSINE1 SINE B4 3 133 -32 7 2076 306 0 0 0 chr1 195466322 195466356 -1729076 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 2076 1393 167 19 46 chr1 195467790 195468097 -1727335 - RLTR11A LTR ERVK -2 526 228 7 2076 471 183 114 24 chr1 195468294 195468417 -1727015 + RCHARR1 DNA MER1_type 490 623 -351 7 2076 408 40 0 0 chr1 195468785 195468835 -1726597 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 2076 195 129 0 0 chr1 195468976 195469007 -1726425 + (T)n Simple_repeat Simple_repeat 1 31 0 7 2076 270 81 0 0 chr1 195469581 195469618 -1725814 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 2076 1080 96 250 0 chr1 195469905 195470093 -1725339 - Lx3_Mus LINE L1 0 7009 6775 7 2076 2105 303 107 38 chr1 195470111 195470386 -1725046 - Lx9 LINE L1 -149 7495 7173 7 2076 1847 187 30 14 chr1 195470386 195470754 -1724678 - ORR1D1 LTR MaLR 0 374 1 7 2076 2105 286 104 27 chr1 195470754 195471460 -1723972 - Lx9 LINE L1 -339 7305 6429 7 2076 377 295 10 10 chr1 195471457 195471553 -1723879 - Lx9 LINE L1 -1140 6504 6409 7 2076 1263 209 16 9 chr1 195471553 195471871 -1723561 + RCHARR1 DNA MER1_type 595 914 -60 7 2076 360 311 38 0 chr1 195472345 195472451 -1722981 + HERV16-int LTR ERVL 2136 2245 -2751 7 2076 1341 227 126 0 chr1 195472639 195472996 -1722436 - MTD LTR MaLR -8 411 10 7 2076 642 204 92 7 chr1 195473115 195473268 -1722164 + MTD LTR MaLR 194 359 -60 7 2076 718 269 163 13 chr1 195474276 195474577 -1720855 - MLT1H-int LTR MaLR -5 1404 1059 7 2076 438 20 0 0 chr1 195474736 195474787 -1720645 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 7 2076 378 225 115 77 chr1 195474787 195474858 -1720574 + B1_Mm SINE Alu 1 81 -66 7 2076 2008 116 56 3 chr1 195474858 195475162 -1720270 + ORR1A3 LTR MaLR 5 324 -2 7 2076 378 225 115 77 chr1 195475162 195475220 -1720212 + B1_Mm SINE Alu 82 135 -12 7 2076 405 0 0 0 chr1 195475221 195475266 -1720166 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 7 2076 397 301 135 62 chr1 195475711 195476083 -1719349 - MLT1H-int LTR MaLR -970 439 1 7 2076 987 122 14 0 chr1 195476802 195476950 -1718482 - B1_Mur4 SINE Alu 0 150 1 7 2076 496 248 9 0 chr1 195477021 195477134 -1718298 - RSINE1 SINE B4 -38 127 14 7 2076 1333 174 233 40 chr1 195477396 195477744 -1717688 + MTD LTR MaLR 5 419 0 7 2076 232 307 155 25 chr1 195478204 195478571 -1716861 + L1MEf LINE L1 723 1137 -5063 7 2076 258 216 27 13 chr1 195478998 195479073 -1716359 + L1MA6 LINE L1 5925 6000 -300 7 2076 747 246 63 0 chr1 195479788 195479979 -1715453 + B3 SINE B2 2 204 -12 7 2076 210 333 0 0 chr1 195480873 195480939 -1714493 + CT-rich Low_complexity Low_complexity 2 67 0 7 2076 459 313 84 39 chr1 195481415 195481701 -1713731 + L3 LINE CR1 3989 4287 -202 7 2076 1065 44 81 0 chr1 195481989 195482125 -1713307 + B1_Mm SINE Alu 1 147 0 7 2076 380 202 0 19 chr1 195482507 195482607 -1712825 + ID4_ SINE ID 9 105 -47 7 2076 273 246 137 16 chr1 195483089 195483213 -1712219 + B1F SINE Alu 5 143 -6 7 2076 236 259 19 0 chr1 195483222 195483276 -1712156 + ID4_ SINE ID 2 56 -27 7 2076 615 201 22 22 chr1 195483318 195483455 -1711977 - ORR1E LTR MaLR -222 137 1 7 2076 188 135 0 26 chr1 195483756 195483794 -1711638 + (TAA)n Simple_repeat Simple_repeat 1 37 0 7 2076 239 336 35 35 chr1 195484003 195484117 -1711315 - PB1D10 SINE Alu -1 116 3 7 2076 232 231 132 0 chr1 195484129 195484220 -1711212 + L1M4 LINE L1 4369 4471 -1675 7 2076 352 306 111 7 chr1 195485143 195485278 -1710154 - ORR1E LTR MaLR -210 149 1 7 2076 1841 123 90 140 chr1 195485345 195485442 -1709990 + RLTR23 LTR ERV1 9 105 -325 7 2076 474 18 0 0 chr1 195485442 195485497 -1709935 + (GAAAA)n Simple_repeat Simple_repeat 4 58 0 7 2076 1841 123 90 140 chr1 195485497 195485843 -1709589 + RLTR23 LTR ERV1 106 430 0 7 2076 792 240 108 8 chr1 195485990 195486250 -1709182 - B4 SINE B4 -6 286 1 7 2076 380 302 179 37 chr1 195489302 195489711 -1705721 + L1MB3 LINE L1 5552 6018 -165 7 2076 228 202 267 11 chr1 195489728 195489818 -1705614 + L1MB3 LINE L1 6067 6179 -4 7 2076 287 270 43 33 chr1 195490763 195490855 -1704577 + RMER30 DNA MER1_type 10 102 -100 7 2076 596 241 123 92 chr1 195492547 195492863 -1702569 + ORR1E LTR MaLR 25 350 -9 7 2076 1338 84 15 40 chr1 195492953 195493151 -1702281 - B2_Mm2 SINE B2 0 195 3 7 2076 268 243 27 0 chr1 195493704 195493778 -1701654 - MTEa LTR MaLR -15 364 289 7 2076 233 57 0 0 chr1 195494097 195494132 -1701300 + SYNREP_MM Satellite Satellite 80 114 -152 7 2076 381 252 122 34 chr1 195494633 195494781 -1700651 - MTEa LTR MaLR -156 223 63 7 2076 1582 312 103 14 chr1 195494811 195495532 -1699900 - MTE-int LTR MaLR 0 1580 796 7 2076 803 319 112 5 chr1 195495778 195496163 -1699269 - MTE-int LTR MaLR -1114 466 41 7 2076 216 0 0 0 chr1 195496385 195496409 -1699023 + (T)n Simple_repeat Simple_repeat 1 24 0 7 2076 545 295 22 55 chr1 195496890 195497073 -1698359 - MTEa LTR MaLR -202 177 1 7 2076 455 317 66 0 chr1 195497271 195497438 -1697994 - MLT1K LTR MaLR -413 182 5 7 2076 263 256 37 37 chr1 195500180 195500261 -1695171 + ID2 SINE ID 3 83 0 1 2076 327 257 208 24 chr1 195500356 195500563 -1694869 + MLT2B4 LTR ERVL 25 269 -287 2 2076 793 19 0 37 chr1 195500806 195500915 -1694517 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 3 2076 605 14 14 0 chr1 195501281 195501355 -1694077 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 2076 490 98 24 0 chr1 195502148 195502230 -1693202 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 2076 345 125 0 0 chr1 195502352 195502408 -1693024 + (CCTG)n Simple_repeat Simple_repeat 1 56 0 6 2076 1003 237 17 30 chr1 195502536 195502771 -1692661 - ORR1D2 LTR MaLR -138 232 1 7 2076 3233 229 33 12 chr1 195502859 195503710 -1691722 - RCHARR1 DNA MER1_type -14 960 92 8 2076 368 217 0 0 chr1 195504121 195504190 -1691242 - ID4 SINE ID -13 70 2 9 2076 329 240 37 52 chr1 195504959 195505095 -1690337 - MamGypLTR2b LTR Gypsy -7 915 782 1 2076 23 0 0 0 chr1 195506192 195506215 -1689217 + AT_rich Low_complexity Low_complexity 1 23 0 1 2076 306 0 0 0 chr1 195510962 195510996 -1684436 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 2076 183 204 0 0 chr1 195511904 195511948 -1683484 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 2076 222 62 0 0 chr1 195512086 195512118 -1683314 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 2076 285 29 0 0 chr1 195512118 195512151 -1683281 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 2076 863 285 21 0 chr1 195512152 195512345 -1683087 - B4A SINE B4 -94 198 2 1 2076 1114 279 153 29 chr1 195512416 195513009 -1682423 + MER45B DNA Tip100 366 1032 -8 1 2076 600 206 0 0 chr1 195513260 195513494 -1681938 + (TG)n Simple_repeat Simple_repeat 1 234 0 1 2076 1198 232 38 8 chr1 195513501 195513766 -1681666 - B4 SINE B4 -6 286 14 1 2076 289 323 10 0 chr1 195514699 195514798 -1680634 + Cheshire DNA MER1_type 172 271 -2149 2 2076 544 205 12 0 chr1 195516287 195516448 -1678984 + (TG)n Simple_repeat Simple_repeat 1 163 0 2 2076 2385 222 180 20 chr1 195517138 195517944 -1677488 - RMER1B Other Other -2 1064 120 2 2076 371 132 0 14 chr1 195519131 195519200 -1676232 + (GGA)n Simple_repeat Simple_repeat 3 70 0 2 2076 369 302 34 32 chr1 195520106 195520299 -1675133 + MIRb SINE MIR 29 217 -45 2 2076 990 180 48 48 chr1 195520509 195520719 -1674713 + B3 SINE B2 2 211 -5 2 2076 886 64 176 0 chr1 195522196 195522321 -1673111 - B1_Mm SINE Alu 0 147 1 2 2076 622 313 45 112 chr1 195522425 195522738 -1672694 + B4 SINE B4 1 292 0 2 2076 213 119 0 0 chr1 195522753 195522795 -1672637 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 2076 273 306 129 20 chr1 195524638 195524785 -1670647 - MER5A DNA MER1_type -23 166 4 2 2076 219 197 0 0 chr1 195525375 195525430 -1670002 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 2076 432 0 0 0 chr1 195525430 195525478 -1669954 + (TGG)n Simple_repeat Simple_repeat 3 50 0 3 2076 197 159 0 22 chr1 195526925 195526970 -1668462 + GA-rich Low_complexity Low_complexity 6 49 0 3 2076 5307 116 21 19 chr1 195530137 195530510 -1664922 + RMER12 LTR ERVK 1 362 -960 3 2076 1151 75 0 7 chr1 195530510 195530658 -1664774 + B1_Mm SINE Alu 1 147 0 3 2076 5307 116 21 19 chr1 195530658 195531169 -1664263 + RMER12 LTR ERVK 363 887 -435 3 2076 366 61 0 0 chr1 195531170 195531219 -1664213 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 2076 1251 165 75 59 chr1 195531232 195531554 -1663878 + RMER12 LTR ERVK 994 1320 -2 3 2076 297 0 0 0 chr1 195532002 195532035 -1663397 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 3 2076 526 309 111 29 chr1 195532160 195532537 -1662895 - RMER5 LTR ERV1 -11 523 116 3 2076 257 362 0 39 chr1 195532817 195533224 -1662208 + C-rich Low_complexity Low_complexity 1 391 0 3 2076 328 285 23 35 chr1 195532979 195533150 -1662282 + CT-rich Low_complexity Low_complexity 1 169 0 3 2076 480 48 0 0 chr1 195533469 195533532 -1661900 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 2076 291 274 27 0 chr1 195535478 195535551 -1659881 - Lx9 LINE L1 -1010 6634 6560 4 2076 1020 265 128 23 chr1 195537409 195537845 -1657587 + RMER5 LTR ERV1 33 514 -20 4 2076 1386 90 27 0 chr1 195537950 195538138 -1657294 + B2_Mm2 SINE B2 3 195 0 4 2076 1420 239 87 16 chr1 195539086 195539537 -1655895 + RMER5 LTR ERV1 33 515 -19 4 2076 861 277 71 62 chr1 195539813 195540167 -1655265 - ORR1E LTR MaLR -2 357 1 4 2076 808 254 19 14 chr1 195541923 195542131 -1653301 + ID_B1 SINE B4 2 210 -14 4 2076 768 270 46 63 chr1 195542220 195542505 -1652927 - MTE2a LTR MaLR -31 348 69 4 2076 24 77 0 0 chr1 195543518 195543570 -1651862 + AT_rich Low_complexity Low_complexity 1 52 0 4 2076 378 304 9 0 chr1 195543798 195543910 -1651522 + B1F SINE Alu 1 113 -36 4 2076 930 266 36 24 chr1 195544256 195544503 -1650929 - ORR1E LTR MaLR -109 250 1 5 2076 386 240 183 61 chr1 195544850 195545112 -1650320 + MTEa LTR MaLR 80 373 -6 5 2076 506 16 16 0 chr1 195546145 195546208 -1649224 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 2076 414 69 0 0 chr1 195546287 195546345 -1649087 + (GGA)n Simple_repeat Simple_repeat 1 58 0 5 2076 1563 242 98 74 chr1 195548294 195548864 -1646568 + RMER13A LTR ERVK 163 746 -114 5 2076 327 367 31 19 chr1 195548862 195549023 -1646409 + RMER13A LTR ERVK 667 829 -31 5 2076 761 201 0 5 chr1 195549327 195549749 -1645683 + (TG)n Simple_repeat Simple_repeat 1 420 0 5 2076 1658 159 56 97 chr1 195550248 195550714 -1644718 + LTRIS5 LTR ERV1 1 447 0 5 2076 346 296 164 0 chr1 195550714 195550872 -1644560 - MER2 DNA MER2_type -73 272 89 5 2076 281 245 58 10 chr1 195550996 195551099 -1644333 - MER2B DNA MER2_type -191 145 38 5 2076 1956 288 77 29 chr1 195551270 195552379 -1643053 - L1M4 LINE L1 -682 5492 4332 6 2076 1002 298 50 11 chr1 195552712 195553147 -1642285 - L1M4 LINE L1 -1941 4205 3780 6 2076 186 43 0 0 chr1 195553196 195553219 -1642213 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 2076 650 276 94 19 chr1 195553288 195553554 -1641878 - B4A SINE B4 -6 286 1 6 2076 590 271 29 0 chr1 195554159 195554299 -1641133 - B1F SINE Alu -5 144 1 6 2076 840 219 324 0 chr1 195554522 195554741 -1640691 + B4A SINE B4 1 290 -2 6 2076 255 284 24 24 chr1 195555831 195555914 -1639518 + MLT1A1 LTR MaLR 314 396 -12 6 2076 704 269 236 35 chr1 195556084 195556423 -1639009 - MLT2B3 LTR ERVL -147 407 1 6 2076 513 0 0 0 chr1 195557580 195557637 -1637795 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 2076 251 335 238 18 chr1 195557643 195557807 -1637625 - MLT1A LTR MaLR -174 200 1 6 2076 454 320 100 50 chr1 195559043 195559303 -1636129 + B4A SINE B4 2 274 -18 6 2077 542 15 15 0 chr1 195563435 195563502 -1631930 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 7 2077 259 303 59 15 chr1 195563519 195563644 -1631788 + MIR SINE MIR 43 168 -94 7 2077 581 139 33 6 chr1 195564947 195565136 -1630296 + GA-rich Low_complexity Low_complexity 1 194 0 7 2077 339 25 0 0 chr1 195565149 195565189 -1630243 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 2077 25 0 0 0 chr1 195565500 195565525 -1629907 + AT_rich Low_complexity Low_complexity 1 25 0 7 2077 944 200 77 6 chr1 195566745 195566926 -1628506 + B3 SINE B2 2 195 -21 7 2077 889 184 7 0 chr1 195566978 195567125 -1628307 - B1_Mus1 SINE Alu 0 148 1 7 2077 699 257 65 65 chr1 195567153 195567415 -1628017 - Lx8 LINE L1 -4 7469 7208 7 2077 1670 209 96 18 chr1 195567729 195568113 -1627319 + MTD LTR MaLR 6 419 0 7 2077 519 208 0 0 chr1 195568438 195568558 -1626874 + GA-rich Low_complexity Low_complexity 1 120 0 7 2077 963 203 31 20 chr1 195569021 195569217 -1626215 - B3A SINE B2 0 198 1 8 2077 504 0 0 0 chr1 195570026 195570082 -1625350 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 2077 230 125 0 226 chr1 195570411 195570473 -1624959 - ORR1E LTR MaLR -7 372 325 8 2077 625 256 147 15 chr1 195570479 195570677 -1624755 - MTD LTR MaLR 0 419 196 8 2077 708 261 147 11 chr1 195570688 195570878 -1624554 - B3 SINE B2 0 216 1 8 2077 269 293 0 51 chr1 195570900 195570979 -1624453 - MTD LTR MaLR -243 176 102 8 2077 1966 159 3 88 chr1 195570994 195571381 -1624051 + ORR1B1 LTR MaLR 41 394 0 8 2077 381 216 10 58 chr1 195571383 195571486 -1623946 - MTD LTR MaLR -319 100 3 8 2077 1387 220 46 29 chr1 195571486 195571776 -1623656 - ORR1E LTR MaLR -60 319 4 8 2077 369 0 0 0 chr1 195572082 195572123 -1623309 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 2077 328 231 89 13 chr1 195572137 195572216 -1623216 - B4 SINE B4 0 292 208 8 2077 183 80 0 0 chr1 195572216 195572241 -1623191 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 8 2077 1112 130 0 18 chr1 195572241 195572405 -1623027 - B2_Mm2 SINE B2 -34 161 1 8 2077 506 279 44 0 chr1 195572430 195572566 -1622866 - B4 SINE B4 -148 144 3 8 2077 240 386 20 10 chr1 195574014 195574033 -1621399 - ID_B1 SINE B4 -121 103 1 9 2077 301 337 0 0 chr1 195574033 195574116 -1621316 - ID4 SINE ID 0 83 1 9 2077 365 281 69 23 chr1 195574116 195574244 -1621188 - B1F SINE Alu -8 141 8 9 2077 419 314 22 178 chr1 195574606 195574927 -1620505 - L2b LINE L2 0 3387 3117 9 2077 1138 210 264 21 chr1 195577174 195577511 -1617921 + MTD LTR MaLR 1 419 0 9 2077 576 29 0 0 chr1 195577734 195577804 -1617628 + (TA)n Simple_repeat Simple_repeat 2 71 0 9 2077 1105 242 324 25 chr1 195578084 195578690 -1616742 + ORR1E-int LTR MaLR 736 1527 -53 9 2077 739 267 77 101 chr1 195578690 195578962 -1616470 + ORR1E LTR MaLR 1 259 -100 9 2077 2076 154 23 73 chr1 195578962 195579360 -1616072 + ORR1C1 LTR MaLR 1 378 0 9 2077 739 267 77 101 chr1 195579360 195579453 -1615979 + ORR1E LTR MaLR 260 357 -2 9 2077 305 227 16 48 chr1 195579480 195579605 -1615827 + (TA)n Simple_repeat Simple_repeat 2 122 0 9 2077 465 294 75 25 chr1 195579646 195579887 -1615545 + L1MB1 LINE L1 5889 6141 -27 9 2077 1320 132 16 0 chr1 195579908 195580097 -1615335 + B2_Mm2 SINE B2 1 192 -3 1 2077 478 281 10 64 chr1 195580344 195580525 -1614907 + HAL1-2a_MD LINE L1 2341 2514 -510 1 2077 417 39 0 0 chr1 195580525 195580576 -1614856 + (CAA)n Simple_repeat Simple_repeat 2 52 0 1 2077 478 281 10 64 chr1 195580576 195580596 -1614836 + HAL1-2a_MD LINE L1 2515 2531 -493 1 2077 324 236 0 0 chr1 195580964 195581053 -1614379 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 2077 459 282 77 0 chr1 195581073 195581307 -1614125 - L1M5 LINE L1 -3173 2973 2722 1 2077 273 260 57 51 chr1 195581712 195581870 -1613562 - Lx9 LINE L1 -28 7616 7458 1 2077 1259 207 31 65 chr1 195581879 195582204 -1613228 - Lx9 LINE L1 -128 7516 7203 1 2077 291 54 0 0 chr1 195582208 195582245 -1613187 - Lx9 LINE L1 -405 7239 7203 1 2077 564 239 31 31 chr1 195582249 195582409 -1613023 - Lx9 LINE L1 -405 7239 7080 1 2077 21724 156 40 12 chr1 195582419 195583677 -1611755 - L1_Mur1 LINE L1 -918 5379 4086 1 2077 468 0 0 0 chr1 195583677 195583729 -1611703 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1 2077 21724 155 40 12 chr1 195583729 195586502 -1608930 - L1_Mur1 LINE L1 -1801 4085 1210 1 2077 1492 115 0 0 chr1 195586504 195586713 -1608719 - L1VL4 LINE L1 -5914 388 180 1 2077 29 0 0 0 chr1 195586961 195586990 -1608442 + AT_rich Low_complexity Low_complexity 1 29 0 1 2077 811 274 29 0 chr1 195587006 195587181 -1608251 - B3A SINE B2 -17 181 2 1 2077 214 248 74 132 chr1 195587188 195587309 -1608123 - PB1D7 SINE Alu -6 114 1 1 2077 256 343 0 10 chr1 195587868 195587971 -1607461 + CT-rich Low_complexity Low_complexity 2 103 0 1 2077 245 323 83 21 chr1 195587980 195588102 -1607330 - B1F SINE Alu -7 142 13 1 2077 1119 286 39 0 chr1 195588134 195588389 -1607043 + B4A SINE B4 7 271 -21 1 2077 293 172 0 15 chr1 195588463 195588528 -1606904 + GA-rich Low_complexity Low_complexity 4 67 0 1 2077 258 105 0 0 chr1 195589230 195589268 -1606164 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1 2077 480 229 73 0 chr1 195589268 195589377 -1606055 - B1F SINE Alu -1 148 32 1 2077 719 234 147 11 chr1 195589507 195589697 -1605735 - B3 SINE B2 0 216 1 1 2077 252 258 56 89 chr1 195589707 195589886 -1605546 - L1MCb LINE L1 -4934 1817 1645 1 2077 741 246 112 33 chr1 195590081 195590447 -1604985 - L1MCb LINE L1 -4852 1193 799 1 2077 403 243 0 0 chr1 195590456 195590530 -1604902 + MTE2b LTR MaLR 11 84 -295 1 2077 231 286 0 72 chr1 195590506 195590589 -1604843 + MTE2b LTR MaLR 36 112 -267 1 2077 1035 241 15 0 chr1 195590631 195590834 -1604598 + B3 SINE B2 1 206 -10 1 2077 701 311 96 27 chr1 195590839 195591279 -1604153 - L1MCb LINE L1 -6031 720 251 1 2077 221 206 9 61 chr1 195591766 195591880 -1603552 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 1 2077 477 258 113 50 chr1 195592581 195592887 -1602545 - L1MC4a LINE L1 -67 7928 7540 1 2077 281 382 27 9 chr1 195592888 195592999 -1602433 + PB1D10 SINE Alu 5 117 0 1 2077 447 285 102 22 chr1 195593008 195593234 -1602198 - L1MC4a LINE L1 -368 7514 7271 1 2077 877 296 70 55 chr1 195595312 195595709 -1599723 - MLT1E2 LTR MaLR -189 438 36 1 2077 550 128 35 0 chr1 195596041 195596127 -1599305 + RLTR25B LTR ERVK 940 1028 0 1 2077 1022 149 133 0 chr1 195596251 195596446 -1598986 - URR1A DNA MER1_type 0 226 6 1 2077 456 352 36 15 chr1 195598687 195598883 -1596549 + LTR78 LTR ERV1 742 941 -363 1 2077 297 327 102 0 chr1 195600113 195600339 -1595093 + L1MEf LINE L1 1221 1469 -4954 1 2077 332 225 38 30 chr1 195600309 195600442 -1594990 + L1MEf LINE L1 1652 1785 -5252 1 2077 316 330 18 18 chr1 195600453 195600564 -1594868 + L1MEf LINE L1 2002 2112 -4925 1 2077 481 274 45 64 chr1 195600589 195600745 -1594687 + RSINE1 SINE B4 3 155 -10 1 2077 3186 149 38 2 chr1 195600872 195601377 -1594055 - RLTR28 LTR ERVL 0 524 2 1 2077 261 0 0 0 chr1 195601434 195601463 -1593969 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1 2077 797 336 121 40 chr1 195601958 195602851 -1592581 + L1MC4 LINE L1 6493 7488 -554 1 2077 1085 264 29 109 chr1 195603268 195603481 -1591951 + MTE2a LTR MaLR 1 184 -195 1 2077 1697 206 141 8 chr1 195603481 195603770 -1591662 + MTD LTR MaLR 3 324 -95 1 2077 558 0 0 0 chr1 195603770 195603832 -1591600 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 2077 1697 206 141 8 chr1 195603832 195603910 -1591522 + MTD LTR MaLR 325 418 -1 1 2077 1085 264 29 109 chr1 195603910 195604108 -1591324 + MTE2a LTR MaLR 185 379 0 1 2077 379 284 108 0 chr1 195605038 195605140 -1590292 + MER81 DNA AcHobo 1 113 -1 1 2077 209 367 71 7 chr1 195605297 195605437 -1589995 + MIR3 SINE MIR 46 194 -14 1 2077 966 265 81 24 chr1 195607166 195607498 -1587934 - ORR1E LTR MaLR -6 353 3 1 2077 509 284 74 37 chr1 195608310 195608500 -1586932 - MER21B LTR ERV1 -9 854 658 1 2077 324 328 80 0 chr1 195608976 195609101 -1586331 - MER21B LTR ERV1 -264 599 465 1 2077 734 289 91 10 chr1 195609115 195609314 -1586118 + ID_B1 SINE B4 9 223 -1 1 2077 866 285 122 42 chr1 195609328 195609756 -1585676 - MER21B LTR ERV1 -401 462 1 1 2077 617 199 0 7 chr1 195610183 195610325 -1585107 + GA-rich Low_complexity Low_complexity 2 142 0 1 2077 450 0 0 0 chr1 195610557 195610607 -1584825 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 2077 198 103 0 0 chr1 195610672 195610701 -1584731 + (T)n Simple_repeat Simple_repeat 1 29 0 1 2077 239 288 24 35 chr1 195611776 195611945 -1583487 + GA-rich Low_complexity Low_complexity 5 171 0 1 2077 183 156 0 0 chr1 195612079 195612111 -1583321 + G-rich Low_complexity Low_complexity 3 34 0 1 2077 359 310 8 49 chr1 195613868 195613990 -1581442 + MTEa LTR MaLR 1 117 -262 1 2077 469 300 116 77 chr1 195614968 195615127 -1580305 + ORR1E LTR MaLR 4 163 -196 1 2077 192 40 0 0 chr1 195615127 195615152 -1580280 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 1 2077 469 300 116 77 chr1 195615152 195615328 -1580104 + ORR1E LTR MaLR 164 351 -8 1 2077 2258 8 145 0 chr1 195617610 195617865 -1577567 + RLTR10B LTR ERVK 1 292 0 1 2077 2435 89 9 16 chr1 195618271 195618591 -1576841 + Lx3B LINE L1 6656 6973 0 1 2077 2137 131 3 0 chr1 195619965 195620285 -1575147 + ORR1A2 LTR MaLR 7 327 0 1 2077 558 291 20 33 chr1 195622124 195622277 -1573155 - RSINE1 SINE B4 0 165 15 1 2077 2949 205 128 39 chr1 195622434 195623236 -1572196 + RMER13B LTR ERVK 1 860 0 1 2077 357 342 92 52 chr1 195624827 195625098 -1570334 - MER115 DNA Tip100 -11 682 401 1 2077 246 368 58 58 chr1 195625292 195625413 -1570019 - MER115 DNA Tip100 -546 147 27 1 2077 183 80 0 0 chr1 195626275 195626300 -1569132 + (T)n Simple_repeat Simple_repeat 1 25 0 1 2077 264 252 66 66 chr1 195626376 195626482 -1568950 + MER90a LTR ERV1 65 170 -444 1 2077 423 312 63 30 chr1 195626730 195627064 -1568368 - L1MEc LINE L1 -572 5775 5431 1 2077 977 276 137 9 chr1 195627184 195627506 -1567926 + MTD LTR MaLR 1 363 -56 1 2077 725 254 63 0 chr1 195627528 195627717 -1567715 + MTC-int LTR MaLR 3 203 -1055 1 2077 382 296 204 28 chr1 195627899 195628399 -1567033 - L1MC LINE L1 -2908 3238 2651 1 2077 228 35 0 0 chr1 195628447 195628476 -1566956 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 2077 261 0 0 0 chr1 195628476 195628504 -1566928 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 2077 661 152 12 0 chr1 195628504 195628675 -1566757 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 2077 309 351 80 22 chr1 195628683 195628957 -1566475 - L1MEc LINE L1 -3571 2748 2459 1 2077 389 308 43 0 chr1 195629064 195629272 -1566160 - L1MEc LINE L1 -3978 2422 2206 1 2077 191 36 0 35 chr1 195629739 195629768 -1565664 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1 2077 904 316 82 4 chr1 195629802 195630072 -1565360 - B4A SINE B4 0 292 2 1 2077 243 122 0 0 chr1 195630085 195630134 -1565298 + (T)n Simple_repeat Simple_repeat 1 49 0 1 2077 42181 5 0 0 chr1 195630159 195636324 -1559108 - L1Md_A LINE L1 0 6582 416 1 2077 23 68 0 0 chr1 195636332 195636376 -1559056 + AT_rich Low_complexity Low_complexity 1 44 0 1 2077 35202 71 2 3 chr1 195636390 195642612 -1552820 - L1Md_F2 LINE L1 0 6582 383 1 2077 3966 115 39 33 chr1 195642614 195643465 -1551967 - L1Md_F LINE L1 -4426 1457 596 1 2077 229 312 10 10 chr1 195643472 195643569 -1551863 - L1MEc LINE L1 -4704 1711 1615 1 2077 1717 201 59 42 chr1 195644008 195644413 -1551019 + MTD LTR MaLR 8 419 0 1 2077 258 262 142 63 chr1 195644514 195644798 -1550634 + L1ME1 LINE L1 5791 6110 -54 1 2077 241 267 0 48 chr1 195644933 195644996 -1550436 + PB1D7 SINE Alu 61 120 0 1 2077 320 119 0 17 chr1 195645263 195645305 -1550127 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2077 387 0 0 0 chr1 195645305 195645348 -1550084 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 2077 320 119 0 17 chr1 195645348 195645365 -1550067 + (CA)n Simple_repeat Simple_repeat 1 17 0 1 2077 279 186 0 0 chr1 195645369 195645393 -1550039 + polypyrimidine Low_complexity Low_complexity 47 70 0 1 2077 342 67 0 0 chr1 195645393 195645438 -1549994 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1 2077 279 186 0 0 chr1 195645438 195645483 -1549949 + polypyrimidine Low_complexity Low_complexity 2 46 0 1 2077 378 0 0 0 chr1 195645568 195645610 -1549822 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 2077 305 293 153 31 chr1 195645732 195645986 -1549446 - L1MEc LINE L1 -5488 912 628 1 2077 242 246 104 67 chr1 195646191 195646326 -1549106 - L1MEc LINE L1 -6039 361 222 1 2077 2348 246 92 10 chr1 195648207 195648878 -1546554 - RCHARR1 DNA MER1_type -248 726 1 1 2077 1431 265 50 16 chr1 195649512 195649876 -1545556 - MTE2b LTR MaLR -4 370 1 1 2077 1495 257 50 0 chr1 195649968 195650311 -1545121 - MTEa LTR MaLR -2 377 18 1 2077 185 178 0 22 chr1 195650943 195650989 -1544443 + CT-rich Low_complexity Low_complexity 2 46 0 1 2077 1036 64 17 12 chr1 195651021 195651194 -1544238 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1 2077 474 219 99 23 chr1 195651240 195651371 -1544061 - B1F SINE Alu -4 145 5 1 2077 268 294 130 17 chr1 195651600 195651730 -1543702 - MIRm SINE MIR -105 163 20 1 2077 698 231 30 7 chr1 195653035 195653170 -1542262 + B1F SINE Alu 1 138 -11 1 2077 542 282 7 4 chr1 195653197 195653379 -1542053 - Lx7 LINE L1 -1972 5724 5511 1 2077 378 42 0 0 chr1 195653421 195653469 -1541963 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 2077 3253 254 99 31 chr1 195653471 195654587 -1540845 + Lx8 LINE L1 5761 6952 -521 1 2077 352 312 0 0 chr1 195654769 195654878 -1540554 + MLT1A1 LTR MaLR 298 406 -2 1 2077 252 375 92 5 chr1 195654949 195655134 -1540298 - L2 LINE L2 -495 2924 2724 1 2077 3278 113 29 36 chr1 195655714 195656192 -1539240 - MT2C_Mm LTR ERVL 0 475 1 1 2077 2600 99 33 30 chr1 195658919 195659283 -1536149 - RLTR8 LTR ERVK 0 365 1 1 2077 180 0 0 0 chr1 195662001 195662021 -1533411 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 2077 565 307 77 65 chr1 195662176 195662656 -1532776 - RLTR12B LTR ERVK -38 490 5 2 2077 337 247 27 27 chr1 195664391 195664466 -1530966 + ID4 SINE ID 1 75 -8 2 2077 261 250 138 24 chr1 195664602 195664725 -1530707 + RMER2 LTR ERV1 405 541 -26 2 2077 246 289 0 146 chr1 195664755 195664844 -1530588 - RSINE1 SINE B4 -85 80 5 2 2077 944 136 6 0 chr1 195664856 195665018 -1530414 + (TC)n Simple_repeat Simple_repeat 1 163 0 2 2077 278 167 17 0 chr1 195665020 195665080 -1530352 + CT-rich Low_complexity Low_complexity 4 64 0 2 2077 417 343 57 10 chr1 195665777 195665986 -1529446 + MIR SINE MIR 32 250 -12 2 2077 266 331 135 5 chr1 195667638 195667823 -1527609 - MLT1C LTR MaLR 0 467 259 2 2077 373 333 66 7 chr1 195668770 195668921 -1526511 + MER58B DNA MER1_type 181 340 -1 2 2077 21 0 0 0 chr1 195669106 195669127 -1526305 + AT_rich Low_complexity Low_complexity 1 21 0 2 2077 603 294 220 4 chr1 195669158 195669431 -1526001 + MER2 DNA MER2_type 1 332 -13 2 2077 190 115 0 0 chr1 195670404 195670430 -1525002 - L2c LINE L2 -24 3363 3338 2 2077 229 216 19 56 chr1 195671820 195671874 -1523558 - LTR68 LTR ERV1 -442 298 247 2 2077 596 263 22 17 chr1 195673577 195673755 -1521677 + MLT1A LTR MaLR 194 372 -2 2 2077 349 265 226 15 chr1 195673824 195674023 -1521409 + MIR SINE MIR 20 260 -2 2 2077 260 236 18 0 chr1 195674191 195674246 -1521186 + LTR88b LTR Gypsy? 762 817 -20 2 2077 603 301 143 39 chr1 195674768 195675027 -1520405 - B4A SINE B4 -2 290 5 2 2077 312 363 84 54 chr1 195675622 195675788 -1519644 - LTR78 LTR ERV1 -807 497 327 2 2077 8233 32 3 41 chr1 195676374 195677409 -1518023 - L1Md_F2 LINE L1 0 6582 5587 2 2077 267 54 0 0 chr1 195678099 195678136 -1517296 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2 2077 310 246 0 44 chr1 195678382 195678450 -1516982 - MTE2a LTR MaLR 0 379 315 2 2077 33257 78 15 2 chr1 195678452 195683430 -1512002 + L1Md_F2 LINE L1 540 5586 -297 2 2077 7781 71 10 27 chr1 195683431 195684440 -1510992 + L1Md_F2 LINE L1 5588 6579 -3 2 2077 975 259 38 103 chr1 195684445 195684764 -1510668 - MTE2a LTR MaLR -75 304 7 2 2077 217 297 143 28 chr1 195685426 195685605 -1509827 - MIRc SINE MIR -7 201 2 2 2077 246 372 32 40 chr1 195686516 195686642 -1508790 + LTR85c LTR Gypsy? 59 183 -640 2 2077 1161 42 13 40 chr1 195688494 195688644 -1506788 + B1_Mus2 SINE Alu 2 147 0 2 2077 377 70 18 0 chr1 195688657 195688714 -1506718 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 2 2078 635 120 8 79 chr1 195690820 195690849 -1504583 - MMSAT4 Satellite Satellite -27 141 122 2 2078 1521 69 16 0 chr1 195690849 195691037 -1504395 - B2_Mm1t SINE B2 -2 191 1 2 2078 635 120 8 79 chr1 195691037 195691134 -1504298 - MMSAT4 Satellite Satellite -47 121 24 2 2078 261 312 44 9 chr1 195691223 195691336 -1504096 - PB1D10 SINE Alu 0 117 1 2 2078 274 250 0 56 chr1 195691255 195691344 -1504088 - ID_B1 SINE B4 -63 161 78 2 2078 472 306 0 50 chr1 195691438 195691579 -1503853 - B1F SINE Alu -9 140 7 2 2078 247 290 14 0 chr1 195692620 195692689 -1502743 + CT-rich Low_complexity Low_complexity 3 72 0 2 2078 1609 28 50 0 chr1 195696732 195696913 -1498519 - B2_Mm1a SINE B2 -3 190 1 2 2078 270 21 64 0 chr1 195697383 195697430 -1498002 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 2078 180 0 0 0 chr1 195697525 195697545 -1497887 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 2078 1193 58 0 7 chr1 195698546 195698684 -1496748 - B1_Mm SINE Alu -10 137 1 2 2078 194 333 75 38 chr1 195698884 195698990 -1496442 + L2c LINE L2 3054 3163 -224 2 2078 3594 140 30 17 chr1 195699507 195700083 -1495349 - RMER4B LTR ERVK -2 583 1 2 2078 253 366 23 0 chr1 195700311 195700483 -1494949 - CR1_Mam LINE CR1 -676 1528 1353 2 2078 828 140 5 43 chr1 195700829 195701016 -1494416 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 2078 609 214 0 22 chr1 195701056 195701238 -1494194 + (TATG)n Simple_repeat Simple_repeat 1 178 0 2 2078 249 33 0 0 chr1 195703053 195703083 -1492349 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 2078 510 17 0 0 chr1 195703093 195703152 -1492280 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 2078 196 296 0 36 chr1 195703291 195703347 -1492085 - MIRm SINE MIR -116 160 107 2 2078 333 47 0 0 chr1 195703807 195703850 -1491582 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 2078 477 0 0 0 chr1 195703850 195703902 -1491530 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 2078 217 371 0 0 chr1 195703906 195703968 -1491464 - ID4_ SINE ID -18 65 4 2 2078 419 293 107 13 chr1 195703996 195704155 -1491277 + MER74A LTR ERVL 323 496 -62 2 2078 1011 155 6 0 chr1 195704437 195704605 -1490827 + URR1A DNA MER1_type 58 226 0 2 2078 4386 151 24 49 chr1 195705352 195705678 -1489754 + RLTR25B LTR ERVK 5 319 -709 2 2078 378 0 0 0 chr1 195705678 195705720 -1489712 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 2078 4386 156 24 45 chr1 195705720 195706325 -1489107 + RLTR25B LTR ERVK 320 1028 0 2 2078 266 302 3 43 chr1 195707636 195707725 -1487707 + MIRb SINE MIR 31 117 -145 2 2078 270 0 0 0 chr1 195707749 195707779 -1487653 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 2078 572 314 13 13 chr1 195707801 195707956 -1487476 - RMER15 LTR ERVL -163 412 258 2 2078 254 272 60 67 chr1 195707980 195708114 -1487318 - RMER15 LTR ERVL -436 139 7 2 2078 201 330 78 20 chr1 195709610 195709712 -1485720 - MIR SINE MIR -23 239 132 2 2078 1357 91 17 0 chr1 195709885 195710061 -1485371 + B2_Mm1t SINE B2 1 179 -14 2 2078 257 175 360 72 chr1 195710127 195710238 -1485194 + B2_Mm2 SINE B2 47 189 -6 2 2078 326 342 0 26 chr1 195710835 195710952 -1484480 + L2b LINE L2 3262 3375 0 2 2078 467 294 154 87 chr1 195713214 195713546 -1481886 + MLT1A0 LTR MaLR 11 364 -1 2 2078 2237 185 8 5 chr1 195714263 195714644 -1480788 + RLTR14 LTR ERV1 1 382 0 2 2078 230 147 333 29 chr1 195714763 195714868 -1480564 - Lx9 LINE L1 -10 7634 7498 2 2078 435 38 0 0 chr1 195714877 195714930 -1480502 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 2078 624 243 118 10 chr1 195714956 195715160 -1480272 - Lx9 LINE L1 -212 7432 7207 2 2078 2348 235 9 38 chr1 195715384 195715933 -1479499 - Lx9 LINE L1 -433 7211 6679 2 2078 26 30 0 0 chr1 195716797 195716830 -1478602 + AT_rich Low_complexity Low_complexity 1 33 0 2 2078 758 234 275 80 chr1 195718078 195718380 -1477052 + MTE2a LTR MaLR 5 365 -14 2 2078 822 101 34 0 chr1 195718493 195718705 -1476727 + (TCTA)n Simple_repeat Simple_repeat 1 219 0 2 2078 21 0 0 0 chr1 195718712 195718733 -1476699 + AT_rich Low_complexity Low_complexity 1 21 0 2 2078 416 218 20 10 chr1 195718765 195718867 -1476565 - L1MA4A LINE L1 -378 5925 5823 2 2078 185 35 0 65 chr1 195720001 195720032 -1475400 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 2078 1248 282 44 12 chr1 195720193 195720534 -1474898 + MTD LTR MaLR 66 417 -2 2 2078 250 289 72 29 chr1 195720795 195720934 -1474498 - L1ME4a LINE L1 -188 5936 5792 2 2078 421 277 49 49 chr1 195721923 195722086 -1473346 + RSINE1 SINE B4 3 165 0 2 2078 257 263 0 0 chr1 195722087 195722163 -1473269 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 2078 231 88 0 0 chr1 195722807 195722841 -1472591 + (A)n Simple_repeat Simple_repeat 1 34 0 2 2078 336 48 0 0 chr1 195725494 195725536 -1469896 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2 2078 1073 99 0 0 chr1 195725537 195725678 -1469754 - B1_Mus1 SINE Alu -6 142 2 2 2078 240 307 121 24 chr1 195725872 195726162 -1469270 - L1MC4a LINE L1 -196 7686 7369 2 2078 305 326 19 53 chr1 195726170 195726377 -1469055 - L1MC4 LINE L1 -573 7469 7270 2 2078 361 271 138 65 chr1 195726506 195726858 -1468574 - L1ME3 LINE L1 -132 6047 5684 2 2078 189 0 0 0 chr1 195726858 195726879 -1468553 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 2078 361 249 142 74 chr1 195726879 195727034 -1468398 - L1ME3 LINE L1 -477 5685 5510 2 2078 440 238 129 113 chr1 195727067 195727261 -1468171 + B3A SINE B2 2 198 0 2 2078 352 248 29 0 chr1 195727301 195727428 -1468004 - L1ME3 LINE L1 -901 5443 5312 2 2078 314 278 94 34 chr1 195727567 195727716 -1467716 - L1ME3 LINE L1 -1109 5037 4880 2 2078 239 281 40 14 chr1 195727780 195727928 -1467504 - L1ME3 LINE L1 -1340 4806 4655 2 2078 405 102 0 0 chr1 195728113 195728172 -1467260 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 2078 340 289 30 77 chr1 195728212 195728381 -1467051 - L1MD LINE L1 -1828 4318 4158 2 2078 739 0 0 0 chr1 195728447 195728534 -1466898 + L1_Mm LINE L1 5732 5818 -65 2 2078 25 31 0 0 chr1 195728582 195728614 -1466818 + AT_rich Low_complexity Low_complexity 1 32 0 2 2078 370 279 76 67 chr1 195728615 195728734 -1466698 - RSINE1 SINE B4 0 165 46 2 2078 393 300 99 67 chr1 195728770 195729084 -1466348 - L1ME3 LINE L1 -1958 4188 3865 2 2078 257 307 133 8 chr1 195729271 195729399 -1466033 - RSINE1 SINE B4 -19 146 3 2 2078 308 266 37 59 chr1 195729472 195729608 -1465824 - L1MEg LINE L1 -3171 3148 3016 2 2078 308 258 16 8 chr1 195729664 195729785 -1465647 - L1MEg LINE L1 -3324 2995 2874 2 2078 289 250 28 73 chr1 195730120 195730297 -1465135 - L1MEg LINE L1 -3931 2469 2301 2 2078 729 204 43 21 chr1 195730304 195730444 -1464988 - B1_Mur2 SINE Alu -5 144 2 2 2078 332 234 97 45 chr1 195731028 195731162 -1464270 - L1MEg LINE L1 -4170 2245 2105 2 2078 440 204 45 27 chr1 195731219 195731330 -1464102 - MIR SINE MIR -34 228 116 2 2078 337 236 146 35 chr1 195732801 195732972 -1462460 - Lx7 LINE L1 -25 7448 7259 2 2078 1036 261 95 38 chr1 195732982 195733389 -1462043 - Lx7 LINE L1 -517 6956 6517 2 2078 531 0 0 0 chr1 195733675 195733734 -1461698 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 2078 401 0 20 0 chr1 195733802 195733851 -1461581 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2 2078 22 0 0 0 chr1 195733992 195734014 -1461418 + AT_rich Low_complexity Low_complexity 1 22 0 2 2078 323 281 29 10 chr1 195735076 195735180 -1460252 + MIRb SINE MIR 132 237 -31 2 2078 1865 164 62 20 chr1 195736876 195737230 -1458202 - MTC LTR MaLR -27 394 43 2 2078 4194 190 105 23 chr1 195737238 195738189 -1457243 - MTC-int LTR MaLR -32 1338 380 2 2078 915 100 40 0 chr1 195738189 195738339 -1457093 - L1_Mus3 LINE L1 -7 6631 6476 2 2078 1454 141 52 19 chr1 195738339 195738609 -1456823 - MTC-int LTR MaLR -928 442 120 2 2078 485 350 34 48 chr1 195739237 195739275 -1456157 + HERV16-int LTR ERVL 2468 2503 -2493 2 2078 1249 279 31 14 chr1 195739275 195739628 -1455804 - ORR1E LTR MaLR 0 359 1 2 2078 485 350 34 48 chr1 195739628 195739943 -1455489 + HERV16-int LTR ERVL 2504 2816 -2180 2 2078 294 200 14 0 chr1 195739955 195740025 -1455407 + L1M5 LINE L1 4524 4594 -1552 2 2078 369 345 53 61 chr1 195740599 195740861 -1454571 + LTR16A LTR ERVL 1 260 -191 2 2078 532 324 47 19 chr1 195740887 195741101 -1454331 - RMER15 LTR ERVL -15 560 341 3 2078 264 252 202 18 chr1 195741172 195741281 -1454151 - RMER15 LTR ERVL -446 129 1 3 2078 250 180 0 0 chr1 195742174 195742235 -1453197 + Lx6 LINE L1 7400 7460 0 3 2078 342 265 133 0 chr1 195742254 195742352 -1453080 + PB1D7 SINE Alu 10 120 0 3 2078 1101 181 25 0 chr1 195742784 195742988 -1452444 + B3 SINE B2 1 209 -7 3 2078 542 350 127 40 chr1 195743143 195743735 -1451697 + L1M5 LINE L1 4521 5163 -983 3 2078 186 371 29 65 chr1 195743839 195744009 -1451423 - MIRb SINE MIR -16 252 89 3 2078 484 314 29 23 chr1 195744557 195744730 -1450702 - RMER30 DNA MER1_type -6 196 23 3 2078 236 322 124 34 chr1 195745561 195745770 -1449662 - L3 LINE CR1 -23 4466 4239 3 2078 1359 67 0 0 chr1 195746420 195746599 -1448833 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 3 2078 409 17 67 0 chr1 195746599 195746659 -1448773 + (TCTCC)n Simple_repeat Simple_repeat 5 68 0 3 2078 399 21 0 0 chr1 195747718 195747766 -1447666 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 2078 21 0 0 0 chr1 195747784 195747805 -1447627 + AT_rich Low_complexity Low_complexity 1 21 0 3 2078 252 318 112 37 chr1 195748403 195748537 -1446895 - MLT1G3 LTR MaLR -451 144 1 3 2078 251 211 6 54 chr1 195748649 195748731 -1446701 - ID4 SINE ID -6 77 4 3 2078 229 292 0 0 chr1 195748691 195748739 -1446693 - ZP3AR Satellite Satellite -127 85 38 3 2078 217 290 176 9 chr1 195748758 195748866 -1446566 - PB1 SINE Alu 0 127 2 3 2078 948 233 128 52 chr1 195748894 195749238 -1446194 + ORR1D2 LTR MaLR 1 370 0 3 2078 39 60 0 0 chr1 195749398 195749465 -1445967 + AT_rich Low_complexity Low_complexity 1 67 0 3 2078 423 335 6 96 chr1 195750722 195750900 -1444532 - RSINE1 SINE B4 0 165 4 3 2078 25 51 0 0 chr1 195751271 195751310 -1444122 + AT_rich Low_complexity Low_complexity 1 39 0 3 2078 842 318 73 30 chr1 195751325 195751653 -1443779 + ORR1E LTR MaLR 1 342 -17 3 2078 531 0 0 0 chr1 195751657 195751716 -1443716 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 2078 539 328 94 69 chr1 195751720 195752080 -1443352 - MLT1A LTR MaLR 0 374 6 3 2078 339 291 90 30 chr1 195752206 195752440 -1442992 + L1ME4a LINE L1 5629 5876 -248 3 2078 181 274 69 35 chr1 195753345 195753432 -1442000 + MIRm SINE MIR 39 128 -148 3 2078 243 191 0 0 chr1 195753986 195754049 -1441383 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 2078 330 45 0 0 chr1 195754051 195754095 -1441337 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 2078 288 0 0 0 chr1 195754545 195754577 -1440855 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 2078 201 337 174 80 chr1 195754741 195755344 -1440088 + L2 LINE L2 2423 3082 -337 3 2078 1952 289 9 19 chr1 195755718 195756255 -1439177 - Lx5 LINE L1 -3 7047 6516 3 2078 3762 184 12 6 chr1 195756243 195756965 -1438467 - L1_Mur3 LINE L1 -16 5864 5138 3 2078 337 383 81 18 chr1 195757640 195758033 -1437399 - L2a LINE L2 -1 3425 3008 3 2078 289 294 75 116 chr1 195758216 195758389 -1437043 - L2a LINE L2 -630 2789 2624 3 2078 311 353 203 45 chr1 195758498 195759157 -1436275 - L2a LINE L2 -1731 1688 926 3 2078 185 200 44 0 chr1 195759222 195759267 -1436165 - L2a LINE L2 -2617 802 756 3 2078 836 293 11 0 chr1 195759279 195759460 -1435972 + B4A SINE B4 2 184 -108 3 2078 261 0 0 0 chr1 195759835 195759864 -1435568 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 2078 284 25 0 48 chr1 195761749 195761791 -1433641 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 3 2078 1192 234 75 81 chr1 195762996 195763344 -1432088 - MTE2a LTR MaLR -14 365 20 3 2078 911 287 19 42 chr1 195763346 195763608 -1431824 + B4A SINE B4 37 292 0 3 2078 264 214 0 18 chr1 195763612 195763669 -1431763 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 2078 27 29 0 0 chr1 195764616 195764650 -1430782 + AT_rich Low_complexity Low_complexity 1 34 0 3 2078 21 0 0 0 chr1 195764842 195764863 -1430569 + AT_rich Low_complexity Low_complexity 1 21 0 3 2078 786 301 31 41 chr1 195765257 195765548 -1429884 + B4A SINE B4 1 288 -4 3 2078 828 284 15 20 chr1 195765659 195765860 -1429572 + ID_B1 SINE B4 6 205 -19 3 2078 438 20 0 0 chr1 195767199 195767250 -1428182 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 2078 254 287 31 31 chr1 195767456 195767553 -1427879 + MTEb LTR MaLR 272 368 -11 3 2078 491 231 128 9 chr1 195767815 195767924 -1427508 - B1_Mur1 SINE Alu -27 122 1 3 2078 461 306 220 8 chr1 195767934 195768184 -1427248 - HAL1 LINE L1 -1465 1042 740 3 2078 267 384 31 93 chr1 195768675 195769028 -1426404 + L2c LINE L2 3057 3387 0 3 2078 22 0 0 0 chr1 195769213 195769235 -1426197 + GC_rich Low_complexity Low_complexity 1 22 0 3 2078 2576 88 78 18 chr1 195769825 195770017 -1425415 - BGLII LTR ERVK -2 419 208 3 2078 404 37 19 0 chr1 195770017 195770071 -1425361 + (TATG)n Simple_repeat Simple_repeat 2 56 0 3 2078 2576 88 78 18 chr1 195770071 195770273 -1425159 - BGLII LTR ERVK -214 207 2 3 2078 542 324 38 5 chr1 195770351 195770537 -1424895 + ORR1E LTR MaLR 1 192 -167 3 2078 1880 84 96 10 chr1 195770688 195770989 -1424443 - L1_Mus3 LINE L1 0 6638 6312 3 2078 24 32 0 0 chr1 195770989 195771020 -1424412 + AT_rich Low_complexity Low_complexity 1 31 0 3 2078 5666 97 40 10 chr1 195771020 195771855 -1423577 - Lx3C LINE L1 0 6976 6117 3 2078 733 243 44 50 chr1 195772563 195772745 -1422687 + MTEa LTR MaLR 3 183 -196 3 2078 272 324 0 14 chr1 195772744 195772813 -1422619 + RSINE1 SINE B4 11 78 -87 3 2078 675 259 24 77 chr1 195775612 195775821 -1419611 - B3A SINE B2 0 198 1 3 2078 1931 197 39 36 chr1 195776951 195777367 -1418065 - MTD LTR MaLR -2 417 1 3 2078 377 299 27 20 chr1 195778020 195778170 -1417262 + MIR3 SINE MIR 23 173 -35 3 2078 216 182 0 0 chr1 195779065 195779109 -1416323 + T-rich Low_complexity Low_complexity 2 45 0 3 2078 1830 179 112 26 chr1 195779224 195779609 -1415823 + MTC LTR MaLR 1 418 -3 3 2078 294 297 10 19 chr1 195780103 195780206 -1415226 + CT-rich Low_complexity Low_complexity 5 106 0 3 2078 6326 115 45 10 chr1 195780230 195781333 -1414099 - Lx LINE L1 -25 6629 5492 3 2078 6277 153 11 3 chr1 195781333 195782466 -1412966 + L1_Mur2 LINE L1 4352 5494 -383 3 2078 851 143 25 49 chr1 195782687 195782849 -1412583 + B2_Mm2 SINE B2 4 161 -34 3 2078 261 0 0 0 chr1 195782849 195782878 -1412554 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 2078 5228 104 34 11 chr1 195784192 195784309 -1411123 - Lx LINE L1 -5 6649 6519 3 2078 189 0 0 0 chr1 195784309 195784330 -1411102 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 3 2078 5228 104 34 11 chr1 195784330 195785003 -1410429 - Lx LINE L1 -136 6518 5841 3 2078 308 298 50 58 chr1 195785109 195785230 -1410202 + MER5A1 DNA MER1_type 13 132 -34 3 2078 180 0 0 0 chr1 195785536 195785556 -1409876 + (TGG)n Simple_repeat Simple_repeat 1 20 0 3 2078 333 0 0 0 chr1 195785557 195785594 -1409838 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 2078 207 0 0 0 chr1 195786572 195786595 -1408837 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 2078 201 261 0 71 chr1 195787186 195787285 -1408147 + CT-rich Low_complexity Low_complexity 1 92 0 3 2078 315 0 0 0 chr1 195787369 195787404 -1408028 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 2078 185 94 31 0 chr1 195787433 195787465 -1407967 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 2078 480 285 90 46 chr1 195787674 195788244 -1407188 - L1_Mur3 LINE L1 -776 5367 4788 3 2078 251 243 23 0 chr1 195790492 195790665 -1404767 + GA-rich Low_complexity Low_complexity 2 178 0 3 2078 376 165 11 23 chr1 195792128 195792215 -1403217 + (TATG)n Simple_repeat Simple_repeat 4 89 0 3 2078 1329 215 130 52 chr1 195792248 195792718 -1402714 + RMER4B LTR ERVK 17 598 -13 3 2078 223 237 20 10 chr1 195792726 195792824 -1402608 + (TATATG)n Simple_repeat Simple_repeat 1 99 0 3 2078 230 0 33 0 chr1 195792894 195792924 -1402508 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 3 2078 481 350 100 56 chr1 195795020 195795649 -1399783 - MLT2F LTR ERVL -1 662 6 3 2078 399 289 0 24 chr1 195796100 195796224 -1399208 + L2a LINE L2 1675 1795 -1624 3 2078 332 103 17 0 chr1 195796768 195796826 -1398606 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 2078 572 342 168 29 chr1 195796859 195797651 -1397781 + L2a LINE L2 1927 2828 -591 3 2078 273 338 97 50 chr1 195797695 195798097 -1397335 + L2a LINE L2 2947 3367 -59 3 2078 186 43 0 0 chr1 195798196 195798219 -1397213 + (A)n Simple_repeat Simple_repeat 1 23 0 3 2078 403 198 208 32 chr1 195798511 195798636 -1396796 - B1F1 SINE Alu -2 147 1 3 2078 249 33 0 0 chr1 195799204 195799234 -1396198 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 2078 1070 94 0 0 chr1 195799234 195799372 -1396060 - B1_Mus1 SINE Alu -10 138 1 3 2078 270 0 0 0 chr1 195799841 195799871 -1395561 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 2078 432 0 0 0 chr1 195800227 195800275 -1395157 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 2078 387 0 0 0 chr1 195800904 195800947 -1394485 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 2078 496 303 108 13 chr1 195800962 195801119 -1394313 - B4A SINE B4 -6 286 115 3 2078 200 255 20 12 chr1 195801175 195801245 -1394187 + MIR SINE MIR 53 121 -147 3 2078 200 355 43 0 chr1 195801491 195801584 -1393848 - MIR SINE MIR -158 104 8 3 2078 298 239 0 21 chr1 195801750 195801844 -1393588 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 2078 238 87 43 0 chr1 195802196 195802242 -1393190 + (CAA)n Simple_repeat Simple_repeat 1 48 0 3 2078 227 333 141 25 chr1 195802463 195802626 -1392806 + MER34 LTR ERV1 87 268 -274 3 2078 2026 127 110 3 chr1 195802799 195803155 -1392277 - ORR1B1 LTR MaLR 0 394 1 3 2078 342 216 127 15 chr1 195803371 195803506 -1391926 + MER34 LTR ERV1 376 567 -20 3 2078 750 224 122 66 chr1 195803515 195803835 -1391597 - L1MB7 LINE L1 -108 6076 5739 3 2078 287 250 35 12 chr1 195803833 195803918 -1391514 - L1MB7 LINE L1 -2524 3622 3536 3 2078 202 356 90 8 chr1 195803978 195804111 -1391321 + MER5A DNA MER1_type 44 187 -2 3 2078 367 293 20 0 chr1 195804301 195804400 -1391032 + L2a LINE L2 3326 3426 0 4 2078 344 193 0 24 chr1 195804683 195804768 -1390664 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 4 2078 21 0 0 0 chr1 195805047 195805068 -1390364 + AT_rich Low_complexity Low_complexity 1 21 0 4 2078 398 312 34 14 chr1 195805869 195806015 -1389417 + MamSINE1 SINE tRNA 2 150 -140 4 2078 237 257 68 0 chr1 195807412 195807486 -1387946 + MTEa LTR MaLR 299 377 -2 4 2078 1116 215 198 6 chr1 195808929 195809243 -1386189 + ORR1D1 LTR MaLR 1 374 0 4 2078 1895 124 44 93 chr1 195809677 195810041 -1385391 - ORR1B1 LTR MaLR -8 386 41 4 2078 248 269 63 13 chr1 195810415 195810494 -1384938 - MIR SINE MIR -109 153 71 4 2078 483 335 60 23 chr1 195810600 195810866 -1384566 + B4A SINE B4 1 276 -16 4 2078 498 114 0 0 chr1 195810869 195810948 -1384484 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 2078 721 264 67 28 chr1 195811079 195811332 -1384100 - MER2 DNA MER2_type -77 268 6 4 2078 250 276 34 17 chr1 195811344 195811462 -1383970 + L1M5 LINE L1 2372 2491 -3655 4 2078 198 123 53 0 chr1 195811812 195811869 -1383563 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 2078 365 262 131 24 chr1 195811890 195812058 -1383374 + L1M5 LINE L1 3499 3684 -2462 4 2078 265 303 104 13 chr1 195812127 195812204 -1383228 - PB1D10 SINE Alu -31 86 3 4 2078 259 310 0 14 chr1 195812140 195812212 -1383220 - ID_B1 SINE B4 -78 146 76 4 2078 390 230 8 42 chr1 195812694 195812812 -1382620 - Lx9 LINE L1 -519 7125 7012 4 2078 287 146 0 18 chr1 195813654 195813710 -1381722 + GA-rich Low_complexity Low_complexity 3 57 0 4 2078 216 0 0 0 chr1 195813708 195813732 -1381700 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 2078 354 301 134 42 chr1 195814049 195814288 -1381144 + L1M5 LINE L1 5564 5824 -416 4 2078 378 57 0 0 chr1 195814504 195814557 -1380875 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 2078 365 317 90 30 chr1 195815012 195815178 -1380254 + MIRb SINE MIR 45 220 -48 4 2078 387 157 0 0 chr1 195817093 195817163 -1378269 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 2078 207 0 0 0 chr1 195817865 195817888 -1377544 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 2078 385 274 0 9 chr1 195818996 195819103 -1376329 - MER34 LTR ERV1 -75 467 362 4 2078 372 43 0 0 chr1 195821315 195821361 -1374071 + (CACAG)n Simple_repeat Simple_repeat 3 48 0 4 259 895 287 14 23 chr1 195821557 195821778 -1373654 - ID_B1 SINE B4 0 224 6 4 2079 234 278 14 27 chr1 195823036 195823110 -1372322 + MLT1J LTR MaLR 102 174 -338 4 2079 707 324 42 0 chr1 195823389 195823627 -1371805 + MER2 DNA MER2_type 1 248 -97 4 2079 747 337 12 16 chr1 195823717 195823967 -1371465 - B4A SINE B4 -36 256 8 4 2079 277 224 17 0 chr1 195823984 195824042 -1371390 - RMER15 LTR ERVL -515 60 2 4 2079 1147 62 0 14 chr1 195824119 195824267 -1371165 + B1_Mm SINE Alu 1 146 -1 4 2079 198 236 0 0 chr1 195826757 195826812 -1368620 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 2079 1654 208 75 3 chr1 195827502 195827888 -1367544 - Charlie22a DNA MER1_type -9 482 69 4 2079 441 0 0 0 chr1 195830408 195830457 -1364975 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 2079 329 290 215 34 chr1 195831307 195831689 -1363743 + L1MEc LINE L1 1058 1508 -4907 4 2079 360 0 0 0 chr1 195831702 195831742 -1363690 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 2079 345 24 0 0 chr1 195831742 195831784 -1363648 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 2079 286 293 108 47 chr1 195832223 195832352 -1363080 - MLT1A1 LTR MaLR 0 408 272 4 2079 8113 21 1 5 chr1 195832453 195833386 -1362046 - L1Md_F3 LINE L1 -15 6569 5641 4 2079 1720 286 94 48 chr1 195833366 195834109 -1361323 + Lx9 LINE L1 6790 7566 -78 4 2079 28 29 0 0 chr1 195834208 195834243 -1361189 + AT_rich Low_complexity Low_complexity 1 35 0 4 2079 318 254 188 14 chr1 195834365 195834509 -1360923 - L1MA6 LINE L1 -30 6273 6092 4 2079 429 288 78 35 chr1 195834555 195834882 -1360550 + L1MEc LINE L1 1902 2247 -4168 4 2079 216 0 0 0 chr1 195835134 195835158 -1360274 + (T)n Simple_repeat Simple_repeat 1 24 0 4 2079 268 276 0 0 chr1 195835201 195835288 -1360144 + L1MEc LINE L1 2519 2605 -3714 4 2079 587 14 14 0 chr1 195835386 195835458 -1359974 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 2079 340 294 9 15 chr1 195835734 195835847 -1359585 - B3A SINE B2 -8 208 95 4 2079 843 269 189 7 chr1 195835848 195836249 -1359183 - L1_Mur3 LINE L1 -6667 1045 570 4 2079 414 0 0 0 chr1 195836249 195836295 -1359137 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 2079 843 269 189 7 chr1 195836295 195836328 -1359104 - L1_Mur3 LINE L1 -7143 569 533 4 2079 405 214 20 20 chr1 195836474 195836574 -1358858 + Lx5 LINE L1 6892 6991 -59 4 2079 404 341 140 16 chr1 195836605 195837481 -1357951 + L1MEc LINE L1 4223 5207 -1112 4 2079 608 119 40 0 chr1 195837952 195838053 -1357379 + B1_Mur4 SINE Alu 46 150 0 4 2079 202 277 0 0 chr1 195838105 195838152 -1357280 + CT-rich Low_complexity Low_complexity 6 52 0 4 2079 283 316 144 50 chr1 195838169 195838349 -1357083 - B3A SINE B2 0 198 2 4 2079 207 0 0 0 chr1 195839844 195839867 -1355565 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 2079 228 35 0 0 chr1 195841001 195841030 -1354402 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 4 2079 3162 253 100 41 chr1 195841081 195842034 -1353398 - Lx8 LINE L1 -265 7208 6200 4 2079 205 367 77 36 chr1 195842321 195842595 -1352837 + L2 LINE L2 1849 2133 -1286 4 2079 256 347 82 33 chr1 195842787 195842969 -1352463 + L2 LINE L2 2350 2540 -879 4 2079 715 196 25 14 chr1 195843223 195843379 -1352053 + MTB_Mm LTR MaLR 230 407 0 4 2079 663 188 0 0 chr1 195843387 195843499 -1351933 - Lx7 LINE L1 -1783 5913 5802 4 2079 516 32 0 0 chr1 195843501 195843563 -1351869 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 2079 3573 94 23 8 chr1 195843563 195844075 -1351357 - Lx LINE L1 -97 6557 6038 4 2079 21 0 0 0 chr1 195844481 195844502 -1350930 + AT_rich Low_complexity Low_complexity 1 21 0 4 2079 562 176 27 7 chr1 195844719 195844868 -1350564 + CT-rich Low_complexity Low_complexity 2 153 0 4 2079 508 204 148 35 chr1 195844922 195845064 -1350368 + RSINE1 SINE B4 2 159 -6 4 2079 637 291 58 0 chr1 195846011 195846183 -1349249 - B3 SINE B2 -10 206 25 4 2079 212 350 85 7 chr1 195846319 195846460 -1348972 - L2a LINE L2 -9 3417 3266 4 2079 1308 73 0 0 chr1 195847281 195847458 -1347974 + (GAA)n Simple_repeat Simple_repeat 3 179 0 4 2079 764 198 6 0 chr1 195847470 195847531 -1347901 + polypurine Low_complexity Low_complexity 2 63 0 4 2079 216 0 0 0 chr1 195847531 195847555 -1347877 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 4 2079 764 198 6 0 chr1 195847555 195847665 -1347767 + polypurine Low_complexity Low_complexity 64 173 0 4 2079 262 346 109 5 chr1 195848070 195848284 -1347148 - MIRb SINE MIR -14 254 8 4 2079 189 327 58 29 chr1 195848264 195848368 -1347064 - MIRb SINE MIR -38 230 124 4 2079 788 312 31 55 chr1 195848391 195848683 -1346749 + B4A SINE B4 6 290 -2 4 2079 2742 86 23 0 chr1 195850163 195850548 -1344884 + MTB LTR MaLR 1 394 -6 4 2079 291 313 104 116 chr1 195850995 195851400 -1344032 - RMER10A LTR ERVL -25 417 18 4 2079 283 227 0 20 chr1 195852867 195852966 -1342466 + GA-rich Low_complexity Low_complexity 4 100 0 4 2079 3740 110 123 0 chr1 195854160 195854695 -1340737 + MT2B LTR ERVL 1 601 0 4 2079 215 378 41 25 chr1 195857279 195857401 -1338031 + MER5A DNA MER1_type 18 141 -48 4 2079 1467 261 42 6 chr1 195858214 195858573 -1336859 + MTE2b LTR MaLR 4 375 -4 4 2079 405 0 0 0 chr1 195859402 195859447 -1335985 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 4 2079 1059 88 0 0 chr1 195859449 195859676 -1335756 + (CCTG)n Simple_repeat Simple_repeat 1 227 0 4 2079 208 372 37 70 chr1 195861938 195862181 -1333251 - MIR SINE MIR -20 242 8 4 2079 221 270 16 0 chr1 195862381 195862444 -1332988 + MIR3 SINE MIR 132 195 -13 4 2079 1373 272 19 19 chr1 195863023 195863401 -1332031 - MTEa LTR MaLR 0 379 2 4 2079 863 283 58 51 chr1 195863482 195863739 -1331693 + B4 SINE B4 34 292 0 4 2079 303 28 0 0 chr1 195863777 195863813 -1331619 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 2079 233 231 192 48 chr1 195863885 195864086 -1331346 - MER33 DNA MER1_type -32 292 51 4 2079 244 285 112 19 chr1 195864129 195864290 -1331142 - MER5A DNA MER1_type 0 189 14 4 2079 2097 168 34 26 chr1 195864458 195864861 -1330571 + ORR1B1 LTR MaLR 1 386 -8 4 2079 421 100 44 11 chr1 195866111 195866202 -1329230 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 2079 265 376 20 7 chr1 195866730 195866880 -1328552 + L2b LINE L2 2738 2889 -530 4 2079 194 346 81 86 chr1 195866916 195867299 -1328133 + L2b LINE L2 2960 3340 -35 4 2079 3284 242 79 8 chr1 195869073 195869935 -1325497 - RCHARR1 DNA MER1_type -5 969 47 4 2079 325 242 143 25 chr1 195870168 195870329 -1325103 - MER96B DNA hAT -204 213 34 4 2079 443 298 75 6 chr1 195870456 195870615 -1324817 - B3A SINE B2 0 198 29 4 2079 5844 76 28 1 chr1 195870847 195871586 -1323846 + L1_Mus3 LINE L1 5880 6638 0 4 2079 206 300 33 0 chr1 195872459 195872519 -1322913 - MER5A DNA MER1_type -83 106 45 4 2079 902 343 78 70 chr1 195872623 195873461 -1321971 + MTE-int LTR MaLR 59 956 -624 4 2079 234 182 23 0 chr1 195873472 195873516 -1321916 - ORR1E LTR MaLR -2 357 313 4 2079 270 0 0 0 chr1 195873520 195873550 -1321882 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 2079 4205 66 40 4 chr1 195873559 195874079 -1321353 + L1Md_F2 LINE L1 6030 6568 -14 4 2079 366 23 0 0 chr1 195874080 195874123 -1321309 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 2079 1069 331 115 19 chr1 195874156 195874685 -1320747 + MTE-int LTR MaLR 953 1532 -48 4 2079 237 239 66 33 chr1 195875031 195875122 -1320310 + ORR1D2 LTR MaLR 263 356 -14 4 2079 700 165 128 0 chr1 195875750 195875883 -1319549 + Lx9 LINE L1 7212 7361 -283 4 2079 450 0 0 0 chr1 195876866 195876916 -1318516 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 2079 348 24 0 0 chr1 195876959 195877000 -1318432 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 2079 297 0 0 0 chr1 195877680 195877713 -1317719 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 2079 181 364 0 0 chr1 195878451 195878528 -1316904 + L2a LINE L2 3346 3422 -4 5 2079 213 189 19 19 chr1 195879262 195879316 -1316116 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 5 2079 716 227 79 13 chr1 195879414 195879566 -1315866 - RSINE1 SINE B4 0 165 4 5 2079 416 291 34 8 chr1 195880099 195880217 -1315215 + B1F1 SINE Alu 19 139 -10 5 2079 269 333 59 20 chr1 195880585 195880686 -1314746 + ORR1E LTR MaLR 4 108 -251 5 2079 2409 123 42 0 chr1 195880689 195881021 -1314411 - ORR1A1 LTR MaLR 0 346 1 5 2079 249 83 0 0 chr1 195881259 195881295 -1314137 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 2079 5348 126 110 35 chr1 195881544 195882435 -1312997 + RMER17B LTR ERVK 1 958 0 5 2079 1124 253 43 11 chr1 195883691 195883967 -1311465 + B4 SINE B4 2 286 -6 5 2079 5856 32 17 0 chr1 195885799 195886455 -1308977 - L1Md_T LINE L1 0 6582 5916 5 2079 239 334 97 20 chr1 195887289 195887460 -1307972 + MIRb SINE MIR 6 182 -80 5 2079 315 344 57 31 chr1 195887762 195887941 -1307491 + MLT1C LTR MaLR 4 187 -280 5 2079 1300 250 17 21 chr1 195887941 195888231 -1307201 + B4A SINE B4 4 292 0 5 2079 315 362 82 48 chr1 195888231 195888305 -1307127 + MLT1C LTR MaLR 187 265 -125 5 2079 775 244 74 42 chr1 195888364 195888647 -1306785 - RMER15 LTR ERVL 0 575 284 5 2079 236 304 28 132 chr1 195888786 195888930 -1306502 + MLT1C LTR MaLR 287 415 -52 5 2079 339 317 28 35 chr1 195888959 195889103 -1306329 - L1MA5A LINE L1 -7 6290 6148 5 2079 334 251 177 39 chr1 195889179 195889382 -1306050 - L2 LINE L2 -355 3064 2834 5 2079 254 271 23 12 chr1 195890256 195890342 -1305090 + MTEb LTR MaLR 293 379 0 5 2079 647 219 6 0 chr1 195891289 195891467 -1303965 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 2079 359 261 12 0 chr1 195891474 195891639 -1303793 + (CATA)n Simple_repeat Simple_repeat 4 170 0 5 2079 632 228 0 11 chr1 195891659 195891810 -1303622 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 2079 3413 29 39 0 chr1 195891810 195892191 -1303241 - MTA_Mm LTR MaLR 0 396 1 5 2079 632 228 0 11 chr1 195892191 195892221 -1303211 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 2079 297 346 124 6 chr1 195892576 195892753 -1302679 + MIR SINE MIR 32 229 -33 5 2079 2082 88 22 36 chr1 195893727 195894106 -1301326 - RLTR10A LTR ERVK 0 359 1 5 2079 802 290 147 11 chr1 195894210 195894482 -1300950 - MTE2b LTR MaLR -70 309 1 5 2079 238 275 102 60 chr1 195894793 195895107 -1300325 - L1MEg LINE L1 -2845 3301 2975 5 2079 419 73 15 0 chr1 195895182 195895250 -1300182 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 2079 2340 90 54 0 chr1 195895708 195896041 -1299391 - L1_Mm LINE L1 -2818 3065 2715 5 2079 7815 68 3 14 chr1 195896041 195896458 -1298974 + L1Md_A LINE L1 4876 5283 -600 5 2079 3507 42 5 0 chr1 195896458 195896861 -1298571 + L1Md_F2 LINE L1 6164 6568 -14 5 2079 7815 55 10 12 chr1 195896861 195897622 -1297810 + L1Md_A LINE L1 5284 6044 -540 5 2079 29390 23 0 0 chr1 195897593 195900971 -1294461 + L1Md_A LINE L1 2208 5586 -297 5 2079 8910 37 0 0 chr1 195900971 195901967 -1293465 + L1Md_A LINE L1 5587 6582 0 5 2079 216 0 0 0 chr1 195902005 195902029 -1293403 + (A)n Simple_repeat Simple_repeat 1 24 0 5 2079 4349 80 25 7 chr1 195902029 195902586 -1292846 + L1Md_F2 LINE L1 6005 6571 -11 5 2079 461 303 68 25 chr1 195902943 195903268 -1292164 - L1MEg LINE L1 -4252 1990 1652 5 2079 675 0 0 0 chr1 195903270 195903345 -1292087 + (TTCTC)n Simple_repeat Simple_repeat 5 79 0 5 2079 199 309 206 0 chr1 195903695 195903792 -1291640 - MIRb SINE MIR -61 207 91 5 2079 478 318 130 35 chr1 195904791 195905075 -1290357 - MLT1C LTR MaLR -25 442 132 5 2079 300 241 0 0 chr1 195905230 195905288 -1290144 + MER5B DNA MER1_type 2 59 -119 5 2079 501 284 0 8 chr1 195905576 195905693 -1289739 - PB1D10 SINE Alu -1 116 1 5 2079 38985 12 0 7 chr1 195906576 195911792 -1283640 + L1Md_A LINE L1 413 5586 -297 5 2079 9424 13 0 0 chr1 195911792 195912788 -1282644 + L1Md_A LINE L1 5587 6582 0 5 2079 215 236 0 0 chr1 195912798 195912853 -1282579 + A-rich Low_complexity Low_complexity 1 55 0 5 2079 32 26 0 0 chr1 195912868 195912907 -1282525 + AT_rich Low_complexity Low_complexity 1 39 0 5 2079 499 228 193 0 chr1 195912911 195913025 -1282407 - ID_B1 SINE B4 -3 221 86 5 2079 297 0 0 0 chr1 195913084 195913117 -1282315 + (A)n Simple_repeat Simple_repeat 1 33 0 5 2079 1419 201 151 34 chr1 195913117 195913534 -1281898 + RMER6C LTR ERVK 4 469 -221 5 2079 288 162 10 208 chr1 195913575 195913676 -1281756 - MLT1C LTR MaLR -235 130 50 5 2079 4844 38 5 5 chr1 195913679 195914234 -1281198 - L1Md_F2 LINE L1 -12 6570 6016 5 2079 1780 181 23 84 chr1 195914424 195914453 -1280979 + ORR1C1 LTR MaLR 1 29 -349 5 2079 8938 35 2 1 chr1 195914453 195915446 -1279986 + L1Md_F3 LINE L1 5591 6584 0 5 2079 1780 181 23 84 chr1 195915446 195915809 -1279623 + ORR1C1 LTR MaLR 30 369 -9 5 2079 219 355 70 37 chr1 195915924 195916111 -1279321 + L4 LINE RTE 1612 1804 -225 5 2079 2630 144 14 9 chr1 195917711 195918131 -1277301 - BGLII_Mus LTR ERVK 0 422 1 5 2079 1713 192 95 0 chr1 195918132 195918544 -1276888 - MYSERV16_I-int LTR ERVK 0 2326 1876 5 2079 198 0 0 0 chr1 195919035 195919057 -1276375 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 2079 665 292 17 6 chr1 195919099 195919278 -1276154 - B3A SINE B2 -15 183 3 5 2079 514 303 7 47 chr1 195919283 195919432 -1276000 - B1F SINE Alu -6 143 1 5 2079 963 188 0 0 chr1 195919621 195919862 -1275570 + GA-rich Low_complexity Low_complexity 1 241 0 5 2079 180 0 0 0 chr1 195920248 195920268 -1275164 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 2079 282 53 53 18 chr1 195920275 195920332 -1275100 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 2079 297 367 71 32 chr1 195920433 195920588 -1274844 - MLT1J1 LTR MaLR -50 394 234 5 2079 360 0 0 0 chr1 195921265 195921305 -1274127 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 2079 252 265 102 0 chr1 195921305 195921403 -1274029 - L1MA9 LINE L1 -2 6310 6203 5 2079 309 264 128 27 chr1 195921480 195921628 -1273804 - MLT1J1-int LTR MaLR -618 769 607 5 2079 360 341 116 39 chr1 195921686 195922101 -1273331 - MLT1J1-int LTR MaLR -866 521 75 5 2079 547 318 5 74 chr1 195923818 195923840 -1271592 - B3 SINE B2 -38 178 161 5 2079 378 57 0 0 chr1 195923840 195923893 -1271539 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 5 2079 721 305 6 0 chr1 195923893 195924060 -1271372 - B3A SINE B2 -29 169 2 5 2079 288 257 0 0 chr1 195924113 195924226 -1271206 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 2079 342 248 119 42 chr1 195925574 195925692 -1269740 - MIRb SINE MIR -87 181 55 5 2079 209 277 0 0 chr1 195925973 195926020 -1269412 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 2079 256 280 49 77 chr1 195926415 195926558 -1268874 + LTR79 LTR ERVL 389 527 0 5 2079 244 324 69 0 chr1 195926665 195926767 -1268665 + MER103 DNA DNA 3 111 -55 5 2079 606 276 71 0 chr1 195927003 195927173 -1268259 + B3A SINE B2 1 182 -16 5 2079 1039 283 121 27 chr1 195927616 195928143 -1267289 + L1ME4a LINE L1 5520 6096 -28 5 2079 1841 217 80 57 chr1 195929672 195930199 -1265233 + RLTR31_Mur LTR ERVK 4 542 -11 5 2079 861 210 198 44 chr1 195930579 195930800 -1264632 + ORR1D2 LTR MaLR 1 262 -108 5 2079 501 97 0 0 chr1 195930800 195930872 -1264560 + (CTA)n Simple_repeat Simple_repeat 1 72 0 5 2079 861 210 198 44 chr1 195930872 195930969 -1264463 + ORR1D2 LTR MaLR 263 368 -2 5 2079 2252 141 112 8 chr1 195931107 195931464 -1263968 - ORR1B1 LTR MaLR 0 394 1 5 2079 981 0 0 0 chr1 195933182 195933291 -1262141 + (CTCTG)n Simple_repeat Simple_repeat 1 109 0 5 2079 186 342 97 18 chr1 195933563 195933676 -1261756 - L2a LINE L2 -15 3411 3290 5 2079 195 42 0 0 chr1 195934212 195934236 -1261196 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 2079 342 0 0 0 chr1 195934238 195934276 -1261156 + (GGA)n Simple_repeat Simple_repeat 3 40 0 5 2079 231 36 0 0 chr1 195934295 195934323 -1261109 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 5 2079 705 139 0 0 chr1 195936320 195936442 -1258990 + (GA)n Simple_repeat Simple_repeat 1 122 0 5 2079 252 271 142 71 chr1 195936442 195936724 -1258708 + Lx9 LINE L1 7343 7644 0 5 2079 230 342 66 48 chr1 195937207 195937373 -1258059 + MER34A1 LTR ERV1 315 483 -104 5 2079 448 286 151 5 chr1 195937531 195937717 -1257715 + ORR1E LTR MaLR 1 213 -146 5 2079 2088 276 128 33 chr1 195938008 195938713 -1256719 + MTE-int LTR MaLR 770 1541 -39 5 2079 441 319 43 111 chr1 195938734 195939086 -1256346 + ORR1D2 LTR MaLR 43 370 0 5 2079 24 32 0 0 chr1 195940335 195940366 -1255066 + AT_rich Low_complexity Low_complexity 1 31 0 5 2079 281 26 26 0 chr1 195941083 195941121 -1254311 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 2079 207 298 43 74 chr1 195941206 195941369 -1254063 + MIRc SINE MIR 111 268 0 5 2079 204 40 0 0 chr1 195942372 195942397 -1253035 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 2079 395 342 5 26 chr1 195943122 195943286 -1252146 - MIRb SINE MIR -67 201 37 5 2079 322 248 30 90 chr1 195943466 195943512 -1251920 - B4A SINE B4 -24 268 228 5 2079 342 0 0 0 chr1 195943512 195943550 -1251882 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 2079 518 265 82 93 chr1 195943550 195943671 -1251761 - B4A SINE B4 -65 227 98 5 2079 547 174 228 16 chr1 195943671 195943794 -1251638 - B1_Mur2 SINE Alu 0 149 1 5 2079 518 265 82 93 chr1 195943794 195943895 -1251537 - B4A SINE B4 -195 97 3 5 2079 1233 292 33 3 chr1 195945324 195945692 -1249740 + MTE2b LTR MaLR 1 379 0 5 2079 424 248 62 23 chr1 195945767 195945895 -1249537 + B1F SINE Alu 17 149 0 5 2079 981 293 28 64 chr1 195946619 195946976 -1248456 + MTE-int LTR MaLR 1233 1576 -4 5 2079 281 319 0 21 chr1 195947119 195947212 -1248220 + MTEb LTR MaLR 278 368 -11 5 2079 649 271 207 20 chr1 195947414 195947660 -1247772 - B4A SINE B4 0 292 1 5 2079 311 386 30 0 chr1 195947695 195947796 -1247636 + RSINE1 SINE B4 62 165 0 5 2079 755 251 74 20 chr1 195948605 195948808 -1246624 - B3 SINE B2 -2 214 1 5 2079 660 13 0 0 chr1 195949618 195949695 -1245737 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 2079 29 60 0 0 chr1 195949917 195949967 -1245465 + AT_rich Low_complexity Low_complexity 1 50 0 6 2079 546 290 126 37 chr1 195950029 195950355 -1245077 + ORR1E LTR MaLR 1 355 -4 6 2079 190 219 0 0 chr1 195950499 195950531 -1244901 + L3 LINE CR1 4432 4463 -26 6 259 238 259 0 0 chr1 195952611 195952669 -1242763 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 2080 468 35 0 0 chr1 195952669 195952727 -1242705 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 2080 245 340 0 13 chr1 195952957 195953106 -1242326 + (CATA)n Simple_repeat Simple_repeat 4 150 0 6 2080 21 0 0 0 chr1 195953885 195953906 -1241526 + AT_rich Low_complexity Low_complexity 1 21 0 6 2080 762 11 0 0 chr1 195954048 195954135 -1241297 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 2080 188 304 58 0 chr1 195955785 195955854 -1239578 - MIRc SINE MIR -130 138 66 6 2080 22 0 0 0 chr1 195955961 195955983 -1239449 + AT_rich Low_complexity Low_complexity 1 22 0 6 2080 835 283 0 5 chr1 195955990 195956196 -1239236 - B3 SINE B2 -11 205 1 6 2080 194 342 76 32 chr1 195957091 195957248 -1238184 + L2c LINE L2 3174 3337 -50 6 2080 382 348 42 3 chr1 195957368 195957536 -1237896 - MIRc SINE MIR -68 200 27 6 2080 424 312 42 28 chr1 195957815 195957957 -1237475 + B1F SINE Alu 1 144 -5 6 2080 279 271 0 41 chr1 195957966 195958039 -1237393 + ID4_ SINE ID 1 70 -13 6 2080 518 0 16 0 chr1 195958737 195958799 -1236633 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 2080 214 29 28 28 chr1 195958955 195958991 -1236441 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 2080 450 0 0 0 chr1 195959048 195959098 -1236334 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 2080 209 218 96 75 chr1 195959532 195959626 -1235806 - MIRb SINE MIR -92 176 81 6 2080 7358 64 0 0 chr1 195959920 195960902 -1234530 + L1Md_F2 LINE L1 4605 5586 -297 6 2080 8012 51 2 0 chr1 195960902 195961884 -1233548 + L1Md_F2 LINE L1 5587 6570 -12 6 2080 5101 184 231 30 chr1 195962236 195962536 -1232896 + Lx5 LINE L1 889 1253 -4624 6 2080 180 0 0 0 chr1 195962536 195962556 -1232876 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 2080 5101 176 25 121 chr1 195962556 195962583 -1232849 + Lx5 LINE L1 1254 1272 -4605 6 2080 1017 110 0 14 chr1 195962583 195962731 -1232701 + B1_Mus1 SINE Alu 2 147 -1 6 2080 5101 176 25 121 chr1 195962731 195963524 -1231908 + Lx5 LINE L1 1273 2051 -3826 6 2080 351 0 0 0 chr1 195963524 195963563 -1231869 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 2080 5101 176 25 121 chr1 195963563 195964237 -1231195 + Lx5 LINE L1 2052 2600 -3277 6 2080 7087 177 20 16 chr1 195964232 195966404 -1229028 + Lx5 LINE L1 4809 6998 -52 6 2080 228 67 0 0 chr1 195966428 195966458 -1228974 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 2080 252 0 0 0 chr1 195968674 195968702 -1226730 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 2080 191 325 169 45 chr1 195969868 195970045 -1225387 - MIRb SINE MIR -16 252 54 6 2080 540 0 0 0 chr1 195970046 195970106 -1225326 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 2080 357 43 0 0 chr1 195970106 195970152 -1225280 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 2080 660 298 7 22 chr1 195970165 195970339 -1225093 - B4 SINE B4 -58 166 5 6 2080 197 384 83 21 chr1 195970392 195970634 -1224798 + L2 LINE L2 2094 2350 -1069 6 2080 1180 233 77 122 chr1 195970888 195971280 -1224152 - MTE2a LTR MaLR -5 374 1 6 2080 4236 25 0 4 chr1 195971618 195972102 -1223330 - LTRIS_Mm LTR ERV1 0 482 1 6 2080 703 272 159 4 chr1 195973221 195973472 -1221960 - B4 SINE B4 0 292 3 6 2080 224 281 0 30 chr1 195975753 195975819 -1219613 + GA-rich Low_complexity Low_complexity 1 64 0 6 2080 479 179 0 9 chr1 195975821 195975928 -1219504 + G-rich Low_complexity Low_complexity 2 107 0 6 2080 1167 117 0 0 chr1 195975936 195976116 -1219316 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 6 2080 2316 279 75 38 chr1 195977149 195978438 -1216994 + L1MA8 LINE L1 3897 5232 -911 6 2080 858 167 79 56 chr1 195978829 195979045 -1216387 + URR1B DNA MER1_type 5 225 0 6 2080 673 258 125 12 chr1 195979518 195979849 -1215583 + L1MA8 LINE L1 5692 6061 -230 6 2080 7285 115 8 15 chr1 195979847 195981030 -1214402 - L1_Mus3 LINE L1 -273 5610 4437 6 2080 7498 72 7 14 chr1 195981034 195981087 -1214345 + L1_Mus3 LINE L1 5588 5633 -1005 6 2080 3136 50 0 0 chr1 195981087 195981469 -1213963 - L1Md_T LINE L1 0 6582 6201 6 2080 7498 72 7 14 chr1 195981469 195982467 -1212965 + L1_Mus3 LINE L1 5634 6631 -7 6 2080 23 0 0 0 chr1 195982471 195982494 -1212938 + AT_rich Low_complexity Low_complexity 1 23 0 6 2080 406 289 194 25 chr1 195982579 195983138 -1212294 - L1MC LINE L1 -757 5576 4930 6 2080 22 56 0 0 chr1 195983445 195983481 -1211951 + AT_rich Low_complexity Low_complexity 1 36 0 6 2080 501 32 0 0 chr1 195985252 195985315 -1210117 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 2080 222 208 0 0 chr1 195986385 195986433 -1208999 + (TTAG)n Simple_repeat Simple_repeat 1 48 0 6 2080 202 261 22 11 chr1 195986512 195986601 -1208831 + T-rich Low_complexity Low_complexity 3 92 0 6 2080 254 210 130 27 chr1 195986765 195986838 -1208594 + MIRc SINE MIR 83 158 -110 6 2080 397 351 53 18 chr1 195988249 195988602 -1206830 - L1M5 LINE L1 -605 5635 5269 6 2080 21 36 0 0 chr1 195988852 195988880 -1206552 + AT_rich Low_complexity Low_complexity 1 28 0 6 2080 663 211 200 0 chr1 195989107 195989287 -1206145 - B3 SINE B2 0 216 1 6 2080 314 337 0 0 chr1 195989313 195989399 -1206033 + PB1D10 SINE Alu 10 95 -22 6 2080 311 371 0 0 chr1 195989399 195989410 -1206022 + ID_B1 SINE B4 91 187 -37 6 2080 316 276 11 11 chr1 195989416 195989504 -1205928 + GA-rich Low_complexity Low_complexity 2 89 0 6 2080 261 0 0 0 chr1 195989693 195989722 -1205710 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 6 2080 267 292 108 43 chr1 195990116 195990209 -1205223 - LTR16B2 LTR ERVL -2 460 362 6 2080 384 400 65 55 chr1 195990568 195990935 -1204497 + LTR78 LTR ERV1 571 941 -363 6 2080 1891 194 29 27 chr1 195991281 195991298 -1204134 - ORR1C1 LTR MaLR 0 378 362 6 2080 210 71 0 0 chr1 195991298 195991326 -1204106 + (TTA)n Simple_repeat Simple_repeat 2 29 0 6 2080 1891 194 29 27 chr1 195991326 195991684 -1203748 - ORR1C1 LTR MaLR -17 361 4 6 2080 548 295 103 11 chr1 195991684 195991852 -1203580 - MTD LTR MaLR -234 185 1 6 2080 939 269 37 30 chr1 195991852 195992142 -1203290 - ORR1C1-int LTR MaLR -1256 324 2 6 2080 1020 310 36 56 chr1 195992155 195992568 -1202864 - ORR1C1 LTR MaLR -14 405 1 6 2080 209 158 34 34 chr1 195993440 195993499 -1201933 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 6 2080 429 264 18 9 chr1 195994252 195994363 -1201069 - ORR1D2 LTR MaLR 0 370 259 6 2080 1043 131 6 12 chr1 195994372 195994542 -1200890 + URR1A DNA MER1_type 57 225 -1 6 2080 572 317 62 34 chr1 195994550 195994759 -1200673 - ORR1D2 LTR MaLR -91 279 65 6 2080 2289 242 27 62 chr1 195994780 195995413 -1200019 - ORR1D2-int LTR MaLR -758 612 2 6 2080 1235 278 64 42 chr1 195995415 195995617 -1199815 - ORR1D2 LTR MaLR -1 369 152 6 2080 2054 164 207 70 chr1 195995617 195996221 -1199211 + RMER6C LTR ERVK 4 690 0 6 2080 1235 278 64 42 chr1 195996221 195996375 -1199057 - ORR1D2 LTR MaLR -219 151 5 6 2080 259 306 48 36 chr1 195996807 195996935 -1198497 - MIRc SINE MIR -98 170 38 6 2080 323 323 142 0 chr1 195997980 195998135 -1197297 + L1MC4 LINE L1 6774 6950 -1092 6 2080 1093 248 32 8 chr1 195998136 195998384 -1197048 + MTE2b LTR MaLR 123 376 -3 6 2080 443 375 69 7 chr1 195998469 195998759 -1196673 - MLT1B LTR MaLR -1 389 82 6 2080 185 59 0 56 chr1 195998936 195998972 -1196460 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6 2080 253 293 53 13 chr1 195998991 195999067 -1196365 - MLT1B LTR MaLR -292 98 20 6 2080 303 282 84 22 chr1 195999217 195999395 -1196037 - L1MEc LINE L1 -4553 1847 1659 6 2080 33 25 0 0 chr1 195999455 195999495 -1195937 + AT_rich Low_complexity Low_complexity 1 40 0 6 2080 374 186 27 65 chr1 195999781 195999965 -1195467 + CT-rich Low_complexity Low_complexity 3 179 0 6 2080 419 350 61 68 chr1 196000395 196000542 -1194890 + RSINE1 SINE B4 4 149 -16 1 2080 366 80 0 0 chr1 196000561 196000611 -1194821 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 2 2080 23 0 0 0 chr1 196000612 196000635 -1194797 + AT_rich Low_complexity Low_complexity 1 23 0 3 2080 279 307 46 7 chr1 196000929 196001080 -1194352 - L1MCc LINE L1 -6243 180 24 4 2080 745 308 149 48 chr1 196003327 196003723 -1191709 + MLT2B1 LTR ERVL 72 507 -13 5 2080 964 24 16 0 chr1 196003753 196003876 -1191556 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 6 2080 330 233 111 120 chr1 196004529 196004646 -1190786 + ORR1E LTR MaLR 6 121 -249 7 2080 1221 130 16 0 chr1 196004670 196004855 -1190577 - B2_Mm2 SINE B2 -4 191 4 8 2080 352 297 102 56 chr1 196005268 196005610 -1189822 + ORR1E LTR MaLR 1 358 -1 9 2080 507 354 55 41 chr1 196006106 196006398 -1189034 + MLT1G3 LTR MaLR 109 404 -191 1 2080 300 370 17 8 chr1 196006426 196006546 -1188886 + MLT1G3 LTR MaLR 457 577 -2 1 2080 396 312 44 78 chr1 196006661 196006958 -1188474 + MLT1G3-int LTR MaLR 145 541 -830 1 2080 440 275 275 0 chr1 196006963 196007181 -1188251 + B4A SINE B4 2 279 -13 1 2080 809 288 0 21 chr1 196007222 196007410 -1188022 + ORR1E LTR MaLR 6 189 -170 1 2080 718 89 22 15 chr1 196007416 196007552 -1187880 + (TC)n Simple_repeat Simple_repeat 1 137 0 1 2080 495 0 0 0 chr1 196007552 196007607 -1187825 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 2080 531 240 56 8 chr1 196007642 196007768 -1187664 + ORR1E LTR MaLR 239 370 0 1 2080 312 301 16 0 chr1 196007775 196007898 -1187534 + L1MB8 LINE L1 5658 5782 -402 1 2080 408 291 78 68 chr1 196007924 196008285 -1187147 - ORR1E LTR MaLR -14 365 1 1 2080 493 324 56 56 chr1 196008293 196008649 -1186783 + L1MB8 LINE L1 5797 6152 -26 1 2080 313 326 0 11 chr1 196009250 196009343 -1186089 - PB1D7 SINE Alu 0 120 29 1 2080 270 299 91 33 chr1 196009306 196009427 -1186005 - MTE-int LTR MaLR -628 952 825 1 2080 364 309 87 34 chr1 196009895 196010273 -1185159 - L1M5 LINE L1 -489 5675 5278 1 2080 6039 162 43 13 chr1 196010298 196011413 -1184019 - Lx4B LINE L1 0 7058 5910 2 2080 8893 81 57 5 chr1 196011434 196012200 -1183232 - Lx3_Mus LINE L1 -1 7008 6201 2 2080 180 0 0 0 chr1 196012200 196012220 -1183212 + (G)n Simple_repeat Simple_repeat 1 20 0 2 2080 8893 81 57 5 chr1 196012220 196012777 -1182655 - Lx3_Mus LINE L1 -809 6200 5618 2 2080 241 83 0 0 chr1 196012770 196012806 -1182626 - Lx4B LINE L1 -1132 5926 5891 2 2080 735 102 38 13 chr1 196012886 196013045 -1182387 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 2 2080 252 167 0 0 chr1 196013079 196013127 -1182305 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 2 2080 396 338 53 88 chr1 196013131 196013358 -1182074 - LTR68 LTR ERV1 -443 297 79 2 2080 457 272 82 9 chr1 196013561 196013824 -1181608 - L1M5 LINE L1 -1412 4731 4449 1 2080 381 312 89 37 chr1 196013924 196014307 -1181125 - L1M5 LINE L1 -2081 4065 3663 1 2080 23 68 0 0 chr1 196015052 196015096 -1180336 + AT_rich Low_complexity Low_complexity 1 44 0 2 2080 262 250 83 0 chr1 196015324 196015408 -1180024 - L1M3 LINE L1 -1230 4910 4820 2 2080 6307 92 15 0 chr1 196015868 196016736 -1178696 - L1_Mus4 LINE L1 -2 6634 5754 2 2080 4881 144 9 1 chr1 196016737 196017597 -1177835 + L1_Mur2 LINE L1 4357 5223 -654 2 2080 885 96 44 7 chr1 196017599 196017735 -1177697 + B1_Mus1 SINE Alu 8 148 0 3 2080 337 295 82 76 chr1 196017602 196017760 -1177672 + B4A SINE B4 95 253 -39 3 2080 252 0 0 0 chr1 196017821 196017849 -1177583 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 3 2080 712 24 0 0 chr1 196017852 196017937 -1177495 - BC1_Mm scRNA scRNA -66 86 2 3 2080 2401 70 35 0 chr1 196017944 196018260 -1177172 - L1_Mus1 LINE L1 0 6567 6241 3 2080 243 0 0 0 chr1 196018367 196018394 -1177038 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 3 2080 489 84 0 0 chr1 196018501 196018572 -1176860 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 2080 632 269 83 33 chr1 196018629 196018810 -1176622 + B3A SINE B2 1 190 -8 3 2080 321 329 119 11 chr1 196018818 196019224 -1176208 + L1MA4 LINE L1 5630 6083 -217 3 2080 551 260 0 16 chr1 196019434 196019559 -1175873 + RSINE1 SINE B4 22 144 -21 3 2080 7752 57 2 0 chr1 196021128 196022713 -1172719 - L1Md_F2 LINE L1 -2 6580 4993 4 2080 311 203 109 0 chr1 196023690 196023754 -1171678 - ID4 SINE ID -11 72 2 4 2080 249 312 162 38 chr1 196024634 196024844 -1170588 - L2c LINE L2 -1 3386 3151 4 2080 1236 193 0 5 chr1 196025281 196025494 -1169938 - B3 SINE B2 -1 215 4 4 2080 2503 131 17 57 chr1 196025550 196025970 -1169462 - RLTR9D LTR ERVK 0 403 1 4 2080 215 270 67 13 chr1 196026253 196026328 -1169104 - MIR SINE MIR -70 192 114 4 2080 369 315 146 21 chr1 196027059 196027299 -1168133 - ORR1E LTR MaLR 0 359 90 4 2080 24 53 0 0 chr1 196028919 196028957 -1166475 + AT_rich Low_complexity Low_complexity 1 38 0 4 2080 2881 77 4 73 chr1 196029175 196029351 -1166081 - BGLII LTR ERVK 0 421 248 4 2080 1540 0 0 16 chr1 196029351 196029606 -1165826 + (TTC)n Simple_repeat Simple_repeat 1 250 0 4 2080 2881 77 4 73 chr1 196029606 196029879 -1165553 - BGLII LTR ERVK -174 247 3 4 2080 292 236 120 40 chr1 196031102 196031177 -1164255 + ID4_ SINE ID 2 82 -1 5 2080 213 222 0 0 chr1 196031311 196031374 -1164058 + A-rich Low_complexity Low_complexity 1 63 0 5 2080 323 346 8 0 chr1 196031451 196031581 -1163851 + B1_Mur1 SINE Alu 1 131 -18 5 2080 261 388 10 0 chr1 196031922 196032020 -1163412 + (CGTG)n Simple_repeat Simple_repeat 1 99 0 5 2080 571 338 91 27 chr1 196032136 196032577 -1162855 + L1M5 LINE L1 4588 5056 -1090 5 2080 336 355 87 16 chr1 196033066 196033249 -1162183 + L1MC LINE L1 5630 5825 -2057 5 2080 28 86 0 0 chr1 196033626 196033696 -1161736 + AT_rich Low_complexity Low_complexity 1 70 0 5 2080 317 311 59 47 chr1 196035750 196035919 -1159513 + L2a LINE L2 3256 3426 0 5 2080 325 316 68 34 chr1 196036015 196036133 -1159299 + LTR81A LTR ERV1? 69 190 -1160 5 2080 268 352 67 92 chr1 196037505 196037821 -1157611 - MLT1I LTR MaLR -15 396 89 5 2080 459 0 0 0 chr1 196039552 196039603 -1155829 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 2080 730 31 21 0 chr1 196039675 196039772 -1155660 + (TCCA)n Simple_repeat Simple_repeat 4 102 0 6 2080 449 294 51 55 chr1 196039980 196040688 -1154744 - L1M4 LINE L1 -755 5536 4839 6 2080 686 293 83 58 chr1 196040713 196040820 -1154612 + L1MA7 LINE L1 5564 5674 -617 6 2080 279 54 0 0 chr1 196040820 196040857 -1154575 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 2080 686 293 83 58 chr1 196040857 196041184 -1154248 + L1MA7 LINE L1 5675 6009 -282 6 2080 21 36 0 0 chr1 196041331 196041359 -1154073 + AT_rich Low_complexity Low_complexity 1 28 0 6 2080 25 0 0 0 chr1 196043993 196044018 -1151414 + AT_rich Low_complexity Low_complexity 1 25 0 6 2080 195 220 48 63 chr1 196044018 196044081 -1151351 + MIRm SINE MIR 207 268 -8 6 2080 523 189 11 0 chr1 196044109 196044199 -1151233 + B2_Mm2 SINE B2 1 91 -104 6 2080 1516 178 61 72 chr1 196045251 196045627 -1149805 - ORR1D1 LTR MaLR 0 374 3 6 2080 295 170 0 0 chr1 196045772 196045825 -1149607 - MLT1I LTR MaLR -14 397 345 7 2080 246 253 238 3 chr1 196045894 196045974 -1149458 - B1F1 SINE Alu -10 107 15 7 2080 534 324 104 1 chr1 196047990 196048175 -1147257 + B3A SINE B2 2 203 -13 7 2080 737 88 88 6 chr1 196048175 196048335 -1147097 + (CATATA)n Simple_repeat Simple_repeat 5 177 0 7 2080 804 269 5 25 chr1 196050344 196050542 -1144890 - B4A SINE B4 -4 288 95 7 2080 202 341 142 15 chr1 196051986 196052120 -1143312 + MIRb SINE MIR 9 159 -109 7 2080 213 338 0 13 chr1 196052286 196052364 -1143068 + GA-rich Low_complexity Low_complexity 5 81 0 7 2080 25 0 0 0 chr1 196052379 196052404 -1143028 + AT_rich Low_complexity Low_complexity 1 25 0 7 2080 186 71 0 0 chr1 196052514 196052542 -1142890 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 2080 414 328 16 30 chr1 196053787 196054030 -1141402 + GA-rich Low_complexity Low_complexity 1 239 0 7 2080 530 342 72 7 chr1 196054579 196054885 -1140547 + Lx8 LINE L1 6832 7157 -316 8 2080 243 0 0 0 chr1 196055022 196055049 -1140383 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 2080 180 125 0 0 chr1 196055049 196055080 -1140352 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 2080 216 245 75 0 chr1 196055536 196055589 -1139843 - ID SINE ID -166 58 2 8 2080 24 32 0 0 chr1 196056873 196056904 -1138528 + AT_rich Low_complexity Low_complexity 1 31 0 8 2080 293 305 161 15 chr1 196057013 196057143 -1138289 + B1F1 SINE Alu 1 149 0 8 2080 285 29 0 0 chr1 196058484 196058518 -1136914 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 2080 195 69 0 0 chr1 196058794 196058823 -1136609 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 8 2080 4292 193 115 24 chr1 196059595 196060528 -1134904 + RMER1B Other Other 49 1066 0 8 2080 389 271 35 13 chr1 196060646 196060765 -1134667 - MTE2b LTR MaLR -5 414 256 8 2080 908 264 77 76 chr1 196060856 196061264 -1134168 + MTE2a LTR MaLR 1 405 -14 9 2080 669 13 0 0 chr1 196061405 196061483 -1133949 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 2080 1026 87 8 0 chr1 196061707 196061834 -1133598 + B1_Mus1 SINE Alu 2 129 -19 9 2080 443 130 13 0 chr1 196061836 196061913 -1133519 + (GAA)n Simple_repeat Simple_repeat 2 79 0 9 2080 263 342 0 14 chr1 196062020 196062094 -1133338 - MLT1B LTR MaLR -88 302 230 9 2080 184 353 130 12 chr1 196062831 196063000 -1132432 - L2 LINE L2 -551 2868 2680 9 2080 332 265 118 17 chr1 196064301 196064420 -1131012 - MER5A1 DNA MER1_type -35 131 1 9 2080 284 333 56 68 chr1 196064826 196064987 -1130445 - LTR16C LTR ERVL -16 473 298 9 2080 204 276 0 39 chr1 196065711 196065875 -1129557 + CT-rich Low_complexity Low_complexity 1 157 0 9 2080 266 125 0 35 chr1 196065880 196065938 -1129494 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 9 2080 207 0 0 0 chr1 196066367 196066390 -1129042 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 2080 204 125 0 0 chr1 196066612 196066644 -1128788 + (GGAGAA)n Simple_repeat Simple_repeat 6 37 0 1 2080 699 132 0 0 chr1 196067106 196067220 -1128212 + (TA)n Simple_repeat Simple_repeat 1 114 0 1 2080 227 265 20 0 chr1 196067259 196067361 -1128071 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 2080 297 275 173 15 chr1 196067496 196067629 -1127803 - MLT2B4 LTR ERVL -271 285 132 1 2080 290 360 187 4 chr1 196067768 196068019 -1127413 - MLT2B1 LTR ERVL -194 326 30 1 2080 495 123 0 0 chr1 196068021 196068102 -1127330 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 2080 2905 82 27 0 chr1 196068189 196068557 -1126875 - Lx3_Mus LINE L1 0 7009 6632 1 2080 6276 75 45 6 chr1 196068557 196069416 -1126016 + Lx3_Mus LINE L1 5763 6655 -354 1 2080 1365 40 0 0 chr1 196070059 196070235 -1125197 + (GGA)n Simple_repeat Simple_repeat 3 178 0 1 2080 346 308 75 0 chr1 196073557 196073664 -1121768 - PB1D10 SINE Alu -1 116 2 1 2080 480 48 0 0 chr1 196073672 196073735 -1121697 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 2080 25 31 0 0 chr1 196074781 196074813 -1120619 + AT_rich Low_complexity Low_complexity 1 32 0 1 2080 695 337 35 75 chr1 196075501 196075873 -1119559 + ORR1E LTR MaLR 1 357 -2 1 2080 223 322 31 71 chr1 196076538 196076665 -1118767 + L3 LINE CR1 4241 4362 -127 1 2080 1032 132 179 0 chr1 196077089 196077279 -1118153 - URR1B DNA MER1_type 0 225 2 1 2080 556 270 16 0 chr1 196077353 196077479 -1117953 - ID_B1 SINE B4 -7 217 90 1 2080 624 251 5 54 chr1 196077517 196077702 -1117730 + MLT1C LTR MaLR 1 176 -291 1 2080 742 295 123 0 chr1 196077825 196078093 -1117339 + Lx8 LINE L1 6788 7088 -385 1 2080 1553 215 15 124 chr1 196078241 196078708 -1116724 + MTD LTR MaLR 4 419 0 1 2080 1595 214 97 125 chr1 196078722 196079225 -1116207 + RMER19B LTR ERVK 1 489 -413 1 2080 282 56 0 0 chr1 196079277 196079313 -1116119 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 2080 194 331 53 64 chr1 196080796 196080967 -1114465 - MIRb SINE MIR -36 232 64 1 2080 1323 256 71 54 chr1 196081155 196081563 -1113869 + MTD LTR MaLR 5 419 0 1 2080 513 244 11 2 chr1 196083000 196083117 -1112315 + PB1D10 SINE Alu 4 124 -25 1 32 446 244 28 0 chr1 196083656 196083767 -1111665 + MLT1A0 LTR MaLR 269 365 0 1 2081 221 298 0 9 chr1 196084161 196084266 -1111166 + (TCCA)n Simple_repeat Simple_repeat 3 106 0 1 2081 360 224 54 31 chr1 196084367 196084496 -1110936 + L1M5 LINE L1 5373 5504 -675 1 2081 556 286 132 64 chr1 196084705 196084970 -1110462 + MLT1A1 LTR MaLR 98 380 -28 1 2081 269 289 35 24 chr1 196085138 196085223 -1110209 + L1MA10 LINE L1 6159 6244 -90 1 2081 27 81 0 0 chr1 196085304 196085366 -1110066 + AT_rich Low_complexity Low_complexity 1 62 0 1 2081 702 167 114 0 chr1 196085537 196085669 -1109763 - B1_Mm SINE Alu 0 147 1 1 2081 2255 118 9 0 chr1 196085724 196086039 -1109393 + ORR1A3 LTR MaLR 1 318 -8 1 2081 912 288 109 33 chr1 196086617 196086947 -1108485 + MLT1A1 LTR MaLR 46 400 -8 1 2081 726 308 110 55 chr1 196087280 196087589 -1107843 + ORR1E LTR MaLR 29 354 -5 1 2081 3732 52 2 4 chr1 196089283 196089745 -1105687 - L1_Mm LINE L1 -303 5580 5120 1 2081 7344 39 17 1 chr1 196089745 196090587 -1104845 + L1Md_F2 LINE L1 5726 6580 -2 1 2081 1126 41 7 7 chr1 196091488 196091637 -1103795 + (GGGAGA)n Simple_repeat Simple_repeat 3 151 0 1 2081 7607 32 12 1 chr1 196091750 196092643 -1102789 - L1Md_F2 LINE L1 -2 6580 5678 1 2081 1367 86 0 0 chr1 196092628 196092803 -1102629 + L1Md_F2 LINE L1 5523 5697 -186 1 2081 607 271 96 110 chr1 196092854 196093136 -1102296 + B4 SINE B4 13 290 -2 1 2081 288 0 0 0 chr1 196093179 196093211 -1102221 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 2081 204 302 0 0 chr1 196094090 196094143 -1101289 + GA-rich Low_complexity Low_complexity 2 54 0 1 2081 431 335 35 55 chr1 196096867 196097123 -1098309 + MIR SINE MIR 12 262 0 1 2081 1041 31 47 0 chr1 196097921 196098049 -1097383 + L1_Mus2 LINE L1 6433 6566 0 1 2081 196 276 52 0 chr1 196098154 196098212 -1097220 + L2a LINE L2 3344 3404 -22 1 2081 490 67 27 0 chr1 196098259 196098334 -1097098 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 2081 734 180 6 0 chr1 196098775 196098953 -1096479 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 2081 345 198 0 0 chr1 196098964 196099045 -1096387 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 2081 334 236 492 0 chr1 196099242 196099415 -1096017 - MER58B DNA MER1_type -2 339 82 1 2081 833 287 76 23 chr1 196099627 196099891 -1095541 + B4 SINE B4 1 278 -14 1 2081 221 343 0 0 chr1 196099938 196100005 -1095427 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 2081 2263 101 3 0 chr1 196100590 196100897 -1094535 - ORR1A2 LTR MaLR -19 308 1 1 2081 1044 225 34 0 chr1 196103074 196103283 -1092149 - B3 SINE B2 0 216 1 1 2081 248 381 55 33 chr1 196103476 196103658 -1091774 - MIRb SINE MIR -68 200 15 1 2081 260 385 17 28 chr1 196104174 196104353 -1091079 - 7SK RNA RNA -153 178 2 1 2081 283 275 132 37 chr1 196104363 196104499 -1090933 + B1_Mur1 SINE Alu 1 149 0 1 2081 917 199 76 10 chr1 196104725 196104923 -1090509 + B3 SINE B2 1 211 -5 1 2081 183 177 56 25 chr1 196105925 196106087 -1089345 + (TCTA)n Simple_repeat Simple_repeat 2 168 0 1 2081 262 294 0 14 chr1 196106179 196106248 -1089184 + ID4_ SINE ID 12 79 -4 1 2081 492 226 18 28 chr1 196106239 196106348 -1089084 + ID_B1 SINE B4 99 206 -18 1 2081 1772 290 90 18 chr1 196106468 196107013 -1088419 - MER82 DNA MER2_type 0 653 70 1 2081 21 0 0 0 chr1 196108931 196108952 -1086480 + AT_rich Low_complexity Low_complexity 1 21 0 1 2081 183 167 0 27 chr1 196108990 196109027 -1086405 + MIRc SINE MIR 201 236 -32 1 2081 181 295 190 35 chr1 196109220 196109420 -1086012 - L2b LINE L2 0 3426 3196 1 2081 22 0 0 0 chr1 196109478 196109500 -1085932 + AT_rich Low_complexity Low_complexity 1 22 0 1 2081 191 176 0 0 chr1 196109515 196109549 -1085883 - L2b LINE L2 -242 3133 3100 1 2081 228 318 148 55 chr1 196109579 196109762 -1085670 - L2b LINE L2 -433 2986 2787 1 2081 21 36 0 0 chr1 196110007 196110035 -1085397 + AT_rich Low_complexity Low_complexity 1 28 0 1 2081 456 206 122 10 chr1 196110038 196110136 -1085296 + B1_Mur4 SINE Alu 7 115 -35 1 2081 891 141 6 22 chr1 196110177 196110359 -1085073 + GA-rich Low_complexity Low_complexity 2 180 0 1 2081 1035 67 11 48 chr1 196110359 196110546 -1084886 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 2081 760 166 0 19 chr1 196110554 196110714 -1084718 + GA-rich Low_complexity Low_complexity 2 158 0 1 2081 339 315 77 73 chr1 196111305 196111538 -1083894 - L1MB5 LINE L1 -18 6156 5923 1 2081 812 301 70 19 chr1 196112589 196112860 -1082572 + B4 SINE B4 5 289 -3 1 2081 384 22 0 0 chr1 196113345 196113390 -1082042 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 2081 320 319 53 62 chr1 196116603 196116830 -1078602 - MIR SINE MIR -7 255 31 1 2081 810 257 14 63 chr1 196116948 196117206 -1078226 - B4A SINE B4 -1 291 57 1 2081 5579 144 54 10 chr1 196117323 196118237 -1077195 + Lx4A LINE L1 6102 7055 -3 1 2081 272 303 91 50 chr1 196118506 196118704 -1076728 + MTEb LTR MaLR 20 225 -134 1 2081 282 179 66 104 chr1 196118922 196119028 -1076404 + MTEb LTR MaLR 278 379 0 1 2081 410 312 56 73 chr1 196119282 196119569 -1075863 - MLT1B LTR MaLR -3 387 106 1 2081 1466 184 132 54 chr1 196119585 196120011 -1075421 + Lx9 LINE L1 7183 7641 -3 1 2081 626 90 0 0 chr1 196120100 196120200 -1075232 + L1Md_F2 LINE L1 6471 6570 -12 1 2081 33 0 0 0 chr1 196120317 196120350 -1075082 + AT_rich Low_complexity Low_complexity 1 33 0 1 2081 1472 194 73 20 chr1 196120533 196120615 -1074817 + ORR1B2 LTR MaLR 8 82 -285 1 2081 306 0 0 0 chr1 196120615 196120649 -1074783 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 2081 1472 194 73 20 chr1 196120649 196120908 -1074524 + ORR1B2 LTR MaLR 83 366 -1 1 2081 837 29 0 0 chr1 196120971 196121075 -1074357 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 2081 3049 152 86 16 chr1 196121522 196122069 -1073363 - RMER4B LTR ERVK 0 585 1 1 2081 335 236 102 19 chr1 196122384 196122492 -1072940 + PB1D9 SINE Alu 3 119 -1 1 2081 312 284 14 0 chr1 196122523 196122597 -1072835 + MER20 DNA MER1_type 145 219 0 1 2081 180 277 0 0 chr1 196125358 196125405 -1070027 + L4 LINE RTE 1793 1839 -190 1 2081 759 22 0 0 chr1 196128086 196128175 -1067257 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 2081 297 0 0 0 chr1 196128175 196128207 -1067225 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 2081 231 240 50 55 chr1 196129559 196129740 -1065692 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 1 2081 400 196 80 0 chr1 196129742 196129962 -1065470 + (CACAG)n Simple_repeat Simple_repeat 1 237 0 1 2081 363 176 16 78 chr1 196129980 196130171 -1065261 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 2081 286 290 18 45 chr1 196130226 196130338 -1065094 - ORR1E LTR MaLR -1 358 250 1 2081 511 309 21 27 chr1 196130356 196130542 -1064890 - ORR1E LTR MaLR -169 190 6 1 2081 1238 211 127 39 chr1 196131162 196131547 -1063885 - MTD LTR MaLR 0 419 1 1 2081 285 29 0 0 chr1 196131784 196131818 -1063614 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 2081 432 0 0 0 chr1 196133105 196133153 -1062279 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 2081 185 291 0 0 chr1 196135405 196135460 -1059972 + MIRc SINE MIR 98 152 -116 1 2081 580 297 89 76 chr1 196135695 196135932 -1059500 + B4A SINE B4 53 292 0 1 2081 218 200 0 22 chr1 196135933 196135979 -1059453 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 2081 434 289 16 50 chr1 196136837 196137019 -1058413 + CT-rich Low_complexity Low_complexity 3 178 0 1 2081 1198 62 0 0 chr1 196139675 196139821 -1055611 - B1_Mus1 SINE Alu -2 146 1 1 2081 612 269 0 0 chr1 196142705 196142839 -1052593 + MTE2a LTR MaLR 25 158 -221 1 2081 248 265 99 18 chr1 196142829 196142942 -1052490 + MTE2a LTR MaLR 289 401 -18 1 2081 608 315 7 79 chr1 196143377 196143667 -1051765 + RMER15 LTR ERVL 291 559 -16 1 2081 248 314 91 11 chr1 196143883 196144169 -1051263 - L1M5 LINE L1 -282 5842 5534 2 2081 21 0 0 0 chr1 196144294 196144315 -1051117 + AT_rich Low_complexity Low_complexity 1 21 0 2 2081 675 213 51 7 chr1 196145022 196145159 -1050273 - B1_Mus2 SINE Alu 0 147 5 2 2081 533 298 77 94 chr1 196145564 196146098 -1049334 + Charlie2b DNA MER1_type 1776 2300 -482 2 2081 343 268 106 47 chr1 196146162 196146397 -1049035 + Charlie2b DNA MER1_type 2274 2522 -260 2 2081 580 221 27 14 chr1 196146674 196146821 -1048611 - L1M5 LINE L1 -718 5522 5374 2 2081 353 278 151 5 chr1 196146827 196147026 -1048406 - L1M5 LINE L1 -623 5501 5274 2 2081 26 30 0 0 chr1 196147651 196147684 -1047748 + AT_rich Low_complexity Low_complexity 1 33 0 2 2081 182 62 0 30 chr1 196147754 196147787 -1047645 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 2081 375 186 17 64 chr1 196147801 196147973 -1047459 - RMER17C LTR ERVK -137 273 110 2 2081 1085 311 38 24 chr1 196148163 196148360 -1047072 - MTE2b LTR MaLR -10 349 180 2 2081 429 20 0 0 chr1 196148360 196148410 -1047022 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 2081 1085 311 30 12 chr1 196148410 196148570 -1046862 - MTE2b LTR MaLR -200 179 13 2 2081 445 310 97 66 chr1 196148740 196148999 -1046433 - LTR89 LTR ERVL? -62 817 551 2 2081 223 240 0 0 chr1 196149962 196150012 -1045420 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 2081 228 238 0 0 chr1 196151251 196151314 -1044118 + GA-rich Low_complexity Low_complexity 3 65 0 2 2081 1152 77 0 0 chr1 196151335 196151491 -1043941 + (GGGAA)n Simple_repeat Simple_repeat 2 157 0 2 2081 754 320 56 30 chr1 196151686 196151953 -1043479 + B4A SINE B4 11 284 -8 2 2081 717 298 51 74 chr1 196152348 196152784 -1042648 - MTD LTR MaLR -14 405 1 2 2081 1259 99 0 0 chr1 196152897 196153079 -1042353 + URR1B DNA MER1_type 44 225 0 2 2081 194 363 76 41 chr1 196153891 196154259 -1041173 - L2a LINE L2 -4 3422 3042 2 2081 271 138 215 0 chr1 196156594 196156659 -1038773 + Lx9 LINE L1 7562 7640 -4 2 2081 222 204 0 22 chr1 196156659 196156704 -1038728 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 2081 274 263 118 103 chr1 196158040 196158235 -1037197 + ORSL DNA Tip100 1 198 -77 2 2081 201 114 57 0 chr1 196158236 196158271 -1037161 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 2081 357 24 0 0 chr1 196160600 196160642 -1034790 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 2081 311 208 156 23 chr1 196163128 196163256 -1032176 + MER5A1 DNA MER1_type 13 157 -9 2 2081 293 273 29 57 chr1 196163567 196163672 -1031760 + MIRb SINE MIR 46 147 -121 2 2081 755 299 74 8 chr1 196164939 196165182 -1030250 + B4 SINE B4 4 262 -30 2 2081 301 270 209 0 chr1 196165179 196165294 -1030138 - ID_B1 SINE B4 -47 177 39 2 2081 27 0 0 0 chr1 196165294 196165321 -1030111 + AT_rich Low_complexity Low_complexity 1 27 0 2 2081 901 284 51 21 chr1 196165727 196166061 -1029371 - MER2 DNA MER2_type 0 345 2 2 2081 249 341 15 22 chr1 196166271 196166406 -1029026 + (TG)n Simple_repeat Simple_repeat 1 134 0 2 2081 512 330 68 96 chr1 196166437 196166513 -1028919 - B4 SINE B4 0 292 217 2 2081 329 0 24 0 chr1 196166513 196166554 -1028878 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 2081 512 330 68 96 chr1 196166554 196166769 -1028663 - B4 SINE B4 -76 216 10 2 2081 288 0 0 0 chr1 196167044 196167076 -1028356 + (CACAA)n Simple_repeat Simple_repeat 4 35 0 2 2081 195 276 50 33 chr1 196168607 196168667 -1026765 - MIRc SINE MIR -185 83 23 2 2081 180 220 0 138 chr1 196168723 196168751 -1026681 + MIRm SINE MIR 210 259 -17 2 2081 197 167 0 0 chr1 196168751 196168781 -1026651 + L2a LINE L2 3378 3407 -19 2 2081 306 140 16 66 chr1 196169388 196169449 -1025983 - HAL1-3A_ME LINE L1 -825 2033 1976 2 2081 490 204 18 0 chr1 196169497 196169664 -1025768 + (TATG)n Simple_repeat Simple_repeat 2 171 0 2 2081 658 78 20 0 chr1 196169714 196169816 -1025616 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 2 2081 354 225 0 0 chr1 196169819 196169930 -1025502 + (TG)n Simple_repeat Simple_repeat 2 112 0 2 2081 472 108 11 21 chr1 196169944 196170039 -1025393 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 2 2081 350 192 0 71 chr1 196170287 196170371 -1025061 - B4 SINE B4 0 292 215 2 2081 217 241 52 135 chr1 196170456 196170552 -1024880 - PB1D9 SINE Alu 0 120 33 2 2081 236 324 92 9 chr1 196170482 196170591 -1024841 - B4A SINE B4 -105 187 70 2 2081 311 315 66 33 chr1 196172047 196172198 -1023234 + MIRb SINE MIR 24 179 -89 2 2081 2703 29 71 31 chr1 196173199 196173550 -1021882 + RLTR10B2 LTR ERVK 1 365 0 2 2081 280 325 103 17 chr1 196174114 196174230 -1021202 + RMER15 LTR ERVL 296 421 -154 2 2081 530 344 86 67 chr1 196174533 196175010 -1020422 + L1MEc LINE L1 19 504 -5919 2 2081 755 288 131 70 chr1 196175126 196175715 -1019717 + MLT2B4 LTR ERVL 1 533 0 2 2081 613 310 125 29 chr1 196175722 196176097 -1019335 + L1MEc LINE L1 2709 3119 -3903 2 2081 307 252 103 66 chr1 196176469 196176605 -1018827 + MIR SINE MIR 57 197 -65 2 2081 1140 67 61 0 chr1 196176897 196177061 -1018371 - L1_Mus4 LINE L1 -218 6418 6245 2 2081 487 347 55 5 chr1 196178139 196178339 -1017093 - MER63A DNA AcHobo 0 210 1 2 2081 513 272 65 27 chr1 196178444 196178629 -1016803 - RMER15 LTR ERVL -4 571 380 2 2081 285 391 131 21 chr1 196179362 196179652 -1015780 - L2b LINE L2 -1 3374 3053 2 2081 225 286 0 0 chr1 196180321 196180377 -1015055 + MER5A DNA MER1_type 54 109 -80 2 2081 376 243 28 28 chr1 196180503 196180609 -1014823 + MIR SINE MIR 145 250 -12 2 2081 375 298 53 0 chr1 196180656 196180787 -1014645 - MIRc SINE MIR -129 139 2 2 2081 751 266 161 17 chr1 196181798 196182089 -1013343 - MER119 DNA MER1_type 0 583 251 2 2081 196 338 14 27 chr1 196182473 196182546 -1012886 - MIRc SINE MIR -162 106 35 2 2081 288 228 0 75 chr1 196183271 196183404 -1012028 + (CAAA)n Simple_repeat Simple_repeat 2 124 0 2 2081 241 231 0 0 chr1 196183426 196183478 -1011954 + CT-rich Low_complexity Low_complexity 1 52 0 2 2081 348 325 70 51 chr1 196184295 196184509 -1010923 - L1ME2 LINE L1 -104 6075 5858 2 2081 436 329 67 49 chr1 196184705 196185153 -1010279 - L1ME2 LINE L1 -616 5828 5373 2 2081 791 237 94 19 chr1 196185135 196185453 -1009979 - L1MD LINE L1 -816 5330 4989 2 2081 335 221 63 25 chr1 196187878 196187957 -1007475 - PB1D10 SINE Alu 0 117 36 2 2081 180 0 0 0 chr1 196189939 196189959 -1005473 + (T)n Simple_repeat Simple_repeat 1 20 0 2 2081 395 232 0 0 chr1 196190099 196190168 -1005264 + ID4_ SINE ID 13 81 -2 2 2081 1629 266 37 2 chr1 196190184 196190617 -1004815 + MER97c DNA MER1_type? 297 744 -346 2 2081 186 227 0 0 chr1 196190622 196190666 -1004766 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 2 2081 801 293 33 70 chr1 196190671 196190972 -1004460 - B4 SINE B4 0 292 3 2 2081 21 57 0 0 chr1 196191807 196191842 -1003590 + AT_rich Low_complexity Low_complexity 1 35 0 2 2081 772 208 78 10 chr1 196191843 196192047 -1003385 + Lx9 LINE L1 7248 7465 -179 2 2081 414 0 0 0 chr1 196192050 196192096 -1003336 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 2081 497 299 94 60 chr1 196192156 196192742 -1002690 - L1MEc LINE L1 -2003 4316 3711 2 2081 1636 53 0 0 chr1 196192742 196192950 -1002482 - MTB LTR MaLR 0 400 193 2 2081 877 93 29 0 chr1 196192950 196193090 -1002342 + (TTTC)n Simple_repeat Simple_repeat 2 145 0 2 2081 7464 48 1 8 chr1 196193100 196194516 -1000916 - L1Md_F2 LINE L1 -12 6570 5167 2 2081 9503 63 6 20 chr1 196194518 196195854 -999578 + L1Md_F2 LINE L1 3840 5156 -727 2 2081 1527 47 21 0 chr1 196195854 196196046 -999386 - MTB LTR MaLR -204 196 1 2 2081 1787 75 63 27 chr1 196196046 196196347 -999085 - MTB-int LTR MaLR 0 1098 787 2 2081 408 306 159 39 chr1 196196506 196196764 -998668 - L1MEc LINE L1 -6073 327 39 2 2081 669 141 5 61 chr1 196196794 196196991 -998441 - Lx9 LINE L1 -1 7643 7458 2 2081 245 256 23 11 chr1 196196997 196197084 -998348 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 2081 384 319 147 55 chr1 196197787 196198188 -997244 - HAL1 LINE L1 -945 1562 1125 2 2081 287 25 0 24 chr1 196198583 196198624 -996808 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 2081 2057 107 185 3 chr1 196198842 196199198 -996234 + BGLII LTR ERVK 1 421 0 2 2081 3479 77 85 2 chr1 196199590 196200061 -995371 - RLTR1B LTR ERV1 -2 510 1 2 2081 270 305 90 54 chr1 196200433 196200544 -994888 + L2c LINE L2 3271 3385 -2 2 2081 759 10 30 0 chr1 196200625 196200725 -994707 + (GA)n Simple_repeat Simple_repeat 2 104 0 2 2081 221 139 23 0 chr1 196201558 196201601 -993831 + GA-rich Low_complexity Low_complexity 2 45 0 2 2081 432 0 0 0 chr1 196201784 196201832 -993600 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 2081 282 231 60 42 chr1 196201858 196202025 -993407 + (CATATA)n Simple_repeat Simple_repeat 6 175 0 2 2081 376 245 36 24 chr1 196201943 196202110 -993322 + (CATA)n Simple_repeat Simple_repeat 4 172 0 2 2081 335 240 28 55 chr1 196202061 196202332 -993100 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 2081 270 176 43 32 chr1 196202268 196202362 -993070 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 2 2081 582 170 28 0 chr1 196202387 196202528 -992904 + (CATA)n Simple_repeat Simple_repeat 4 148 0 2 2081 1412 152 5 0 chr1 196202973 196203197 -992235 + URR1B DNA MER1_type 1 225 0 2 2081 365 219 40 6 chr1 196205210 196205306 -990126 + PB1D10 SINE Alu 2 113 -14 2 2081 306 0 0 0 chr1 196205306 196205340 -990092 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 2 2081 314 220 129 21 chr1 196205340 196205353 -990079 + PB1 SINE Alu 114 126 -1 2 2081 44 0 0 0 chr1 196205369 196205413 -990019 + AT_rich Low_complexity Low_complexity 1 44 0 2 2081 1960 177 10 38 chr1 196206717 196207117 -988315 + Lx4B LINE L1 6666 7054 -4 2 2081 275 305 12 12 chr1 196207324 196207407 -988025 - BC1_Mm scRNA scRNA -56 96 14 2 2081 339 216 15 22 chr1 196207823 196207960 -987472 + (CATA)n Simple_repeat Simple_repeat 1 136 0 2 2081 873 79 257 7 chr1 196209648 196209788 -985644 - B2_Mm2 SINE B2 -19 176 2 2 2081 262 288 37 65 chr1 196210886 196211016 -984416 + MIRb SINE MIR 53 177 -91 2 2081 1911 194 68 23 chr1 196211348 196211743 -983689 - MTC LTR MaLR -8 413 1 3 2081 987 257 136 51 chr1 196212272 196212634 -982798 + MTE2a LTR MaLR 8 362 -17 3 2081 374 276 0 10 chr1 196213398 196213497 -981935 - BC1_Mm scRNA scRNA -53 99 2 3 2081 611 308 46 4 chr1 196213594 196213835 -981597 + Lx9 LINE L1 7142 7392 -252 3 2081 297 0 0 0 chr1 196213849 196213882 -981550 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 2081 25 51 0 0 chr1 196213981 196214020 -981412 + AT_rich Low_complexity Low_complexity 1 39 0 3 260 332 321 101 0 chr1 196214714 196214873 -980559 - L1M5 LINE L1 -350 5774 5600 3 2082 423 0 0 0 chr1 196215742 196215789 -979643 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 2082 220 328 65 57 chr1 196216982 196217105 -978327 - MER5B DNA MER1_type -54 124 1 3 2082 195 327 103 0 chr1 196217235 196217342 -978090 + MIRb SINE MIR 83 200 -68 3 2082 2349 154 44 22 chr1 196217362 196217774 -977658 + MTC LTR MaLR 1 421 0 3 2082 2634 178 49 31 chr1 196218232 196218782 -976650 + RLTR20B2 LTR ERVK 1 560 0 3 2082 2142 127 15 0 chr1 196218891 196219215 -976217 - ORR1A4 LTR MaLR 0 329 1 3 2082 303 28 0 0 chr1 196221298 196221334 -974098 + (TAG)n Simple_repeat Simple_repeat 1 36 0 3 2082 2188 136 9 0 chr1 196221676 196222000 -973432 + ORR1A2 LTR MaLR 1 327 0 3 2082 1226 246 69 21 chr1 196222274 196222606 -972826 - ORR1E LTR MaLR -4 355 8 3 2082 305 313 0 0 chr1 196225899 196225966 -969466 - BC1_Mm scRNA scRNA -71 81 15 3 2082 246 368 19 0 chr1 196226264 196226370 -969062 - MER5A1 DNA MER1_type -41 125 18 3 2082 353 259 116 36 chr1 196226392 196226504 -968928 + MER5B DNA MER1_type 7 127 -51 3 2082 238 174 0 42 chr1 196226842 196226914 -968518 + C-rich Low_complexity Low_complexity 6 74 0 3 2082 295 287 72 105 chr1 196229635 196229787 -965645 + B4 SINE B4 77 223 -69 3 2082 757 188 42 35 chr1 196229652 196229795 -965637 + B1_Mur1 SINE Alu 6 149 0 3 2082 237 119 0 0 chr1 196229889 196229931 -965501 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 3 2082 1022 232 14 54 chr1 196229944 196230167 -965265 + B3 SINE B2 3 216 0 3 2082 333 62 0 0 chr1 196230186 196230234 -965198 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 2082 3683 155 7 15 chr1 196230614 196231263 -964169 + Lx6 LINE L1 5278 5923 -1537 3 2082 1901 199 69 16 chr1 196231267 196231644 -963788 - MTB_Mm LTR MaLR -10 397 1 3 2082 1581 214 77 26 chr1 196231644 196232061 -963371 + Lx6 LINE L1 5917 6354 -1342 3 2082 268 146 17 68 chr1 196232309 196232368 -963064 + Lx6 LINE L1 6356 6411 -1285 3 2082 1172 88 0 26 chr1 196232368 196232520 -962912 + B1_Mus1 SINE Alu 1 148 0 3 2082 208 139 0 0 chr1 196232522 196232558 -962874 + (A)n Simple_repeat Simple_repeat 1 36 0 3 2082 869 251 21 16 chr1 196232575 196232769 -962663 + Lx6 LINE L1 6990 7184 -276 3 2082 204 67 0 0 chr1 196233586 196233616 -961816 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 3 2082 183 156 0 0 chr1 196233618 196233650 -961782 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 2082 675 292 268 24 chr1 196233678 196234178 -961254 + L1MB4 LINE L1 5558 6179 -1 3 2082 244 269 15 0 chr1 196234366 196234433 -960999 - MTEb LTR MaLR 0 379 312 3 2082 254 231 45 15 chr1 196234667 196234733 -960699 - ORR1D2 LTR MaLR -296 74 7 3 2082 493 254 41 8 chr1 196234836 196234959 -960473 + B1F SINE Alu 15 141 -8 3 2082 304 22 0 43 chr1 196235837 196235884 -959548 + (CCA)n Simple_repeat Simple_repeat 3 47 0 3 2082 3664 54 44 11 chr1 196236672 196237123 -958309 + L1_Mus2 LINE L1 6101 6566 0 3 2082 189 343 138 7 chr1 196237128 196237266 -958166 + L3 LINE CR1 4154 4309 -180 3 2082 307 332 63 34 chr1 196237783 196237989 -957443 - MIRb SINE MIR -23 245 34 3 2082 186 294 119 60 chr1 196239410 196239544 -955888 - MIRb SINE MIR -52 216 75 3 2082 1528 256 39 11 chr1 196240412 196240775 -954657 + MTEa LTR MaLR 3 375 -4 3 2082 745 339 24 45 chr1 196241266 196241556 -953876 + B4A SINE B4 1 284 -8 3 2082 234 218 18 35 chr1 196242844 196242901 -952531 + GA-rich Low_complexity Low_complexity 1 56 0 3 2082 211 179 0 67 chr1 196243406 196243466 -951966 + A-rich Low_complexity Low_complexity 4 59 0 3 2082 190 349 124 42 chr1 196243693 196243785 -951647 + L2 LINE L2 2245 2350 -1069 3 2082 336 24 0 0 chr1 196243785 196243826 -951606 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 2082 738 0 0 0 chr1 196243826 196243907 -951525 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 2082 190 349 124 42 chr1 196243907 196244336 -951096 + L2 LINE L2 2351 2809 -610 3 2082 231 278 18 18 chr1 196244544 196244599 -950833 + B4A SINE B4 48 102 -190 3 2082 594 247 111 78 chr1 196245148 196245328 -950104 + B4A SINE B4 107 292 0 3 2082 201 244 0 0 chr1 196245789 196245834 -949598 - MIRb SINE MIR -103 165 121 3 2082 193 318 15 0 chr1 196246714 196246780 -948652 + MIRc SINE MIR 94 160 -108 3 2082 459 347 14 7 chr1 196246978 196247123 -948309 - RSINE1 SINE B4 -16 149 4 3 2082 322 212 23 46 chr1 196247906 196248079 -947353 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 3 2082 378 0 0 0 chr1 196248082 196248124 -947308 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 2082 23 33 0 0 chr1 196249349 196249379 -946053 + AT_rich Low_complexity Low_complexity 1 30 0 3 2082 192 152 0 0 chr1 196249651 196249684 -945748 + A-rich Low_complexity Low_complexity 1 33 0 3 2082 189 163 0 0 chr1 196251946 196251995 -943437 + A-rich Low_complexity Low_complexity 2 50 0 3 2082 187 395 12 0 chr1 196252716 196252802 -942630 + MIR SINE MIR 4 90 -172 3 2082 217 233 17 0 chr1 196252815 196252875 -942557 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 3 2082 319 298 58 24 chr1 196252992 196253161 -942271 + MIR SINE MIR 78 260 -8 3 2082 3591 50 35 9 chr1 196253441 196253866 -941566 + RLTR10C LTR ERVK 1 436 0 3 2082 231 269 0 56 chr1 196254001 196254072 -941360 + MIR3 SINE MIR 126 192 -16 3 2082 507 73 0 0 chr1 196255173 196255241 -940191 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 2082 246 32 0 0 chr1 196256192 196256223 -939209 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 3 2082 229 304 69 35 chr1 196256326 196256442 -938990 - ORR1E LTR MaLR -239 120 1 3 2082 687 309 87 29 chr1 196256696 196257006 -938426 - MLT1C LTR MaLR -7 460 133 3 2082 1276 48 0 0 chr1 196257257 196257404 -938028 + B1_Mm SINE Alu 1 147 0 3 2082 383 298 25 34 chr1 196257460 196257578 -937854 - ORR1E LTR MaLR -241 118 2 3 2082 224 200 13 51 chr1 196257613 196257692 -937740 + (TAA)n Simple_repeat Simple_repeat 3 78 0 3 2082 737 311 66 36 chr1 196257834 196258108 -937324 + B4A SINE B4 1 282 -10 3 2082 834 297 55 104 chr1 196258188 196258571 -936861 + MLT1A0 LTR MaLR 1 364 -1 3 2082 282 358 67 13 chr1 196258595 196258819 -936613 - L1M5 LINE L1 -498 5626 5391 3 2082 371 306 78 63 chr1 196258951 196259157 -936275 - MLT1A1 LTR MaLR 0 408 200 3 2082 746 304 37 28 chr1 196259131 196259437 -935995 - MTD LTR MaLR -54 365 18 3 2082 422 390 93 22 chr1 196259934 196260204 -935228 - LTR16E2 LTR ERVL -78 490 202 3 2082 23 0 0 0 chr1 196261430 196261453 -933979 + AT_rich Low_complexity Low_complexity 1 23 0 3 2082 278 247 0 11 chr1 196261827 196261921 -933511 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 2082 219 290 165 18 chr1 196262067 196262176 -933256 - MIR3 SINE MIR -54 154 30 3 2082 183 349 34 23 chr1 196262923 196263011 -932421 + MIR SINE MIR 76 164 -98 3 2082 510 326 50 25 chr1 196264102 196264341 -931091 + LTR79 LTR ERVL 283 527 0 3 2082 189 0 0 0 chr1 196264424 196264445 -930987 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 2082 383 292 75 0 chr1 196265192 196265298 -930134 - MER20 DNA MER1_type -2 217 104 3 2082 274 326 51 7 chr1 196265670 196265773 -929659 + MIRm SINE MIR 13 116 -146 3 2082 190 286 0 20 chr1 196267489 196267539 -927893 - MIRb SINE MIR -62 206 158 3 2082 3159 132 62 4 chr1 196267539 196268041 -927391 - Lx4A LINE L1 -28 7030 6500 3 2082 259 308 0 0 chr1 196269086 196269151 -926281 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 3 2082 206 196 0 38 chr1 196269156 196269209 -926223 + A-rich Low_complexity Low_complexity 2 52 0 3 2082 661 253 284 18 chr1 196269445 196269921 -925511 - L1MA10 LINE L1 0 6334 5585 3 2082 422 157 78 0 chr1 196270412 196270514 -924918 - L1MA10 LINE L1 -750 5396 5287 3 2082 248 259 9 0 chr1 196270673 196270781 -924651 + (TG)n Simple_repeat Simple_repeat 1 109 0 3 2082 1026 298 49 53 chr1 196270796 196271276 -924156 - L1MB7 LINE L1 -7 6177 5689 3 2082 2251 79 10 3 chr1 196271276 196271567 -923865 + L1_Mus3 LINE L1 6346 6638 0 3 2082 1026 298 49 53 chr1 196271567 196271635 -923797 - L1MB7 LINE L1 -496 5688 5631 3 2082 252 254 144 22 chr1 196271895 196272086 -923346 - L1MB7 LINE L1 -781 5459 5254 3 2082 469 303 49 78 chr1 196272117 196272321 -923111 - B3A SINE B2 0 198 1 3 2082 303 319 152 6 chr1 196272515 196272856 -922576 - L1MB7 LINE L1 -1407 4739 4349 3 2082 25 51 0 0 chr1 196272898 196272937 -922495 + AT_rich Low_complexity Low_complexity 1 39 0 3 2082 398 250 43 8 chr1 196272976 196273093 -922339 + MER20 DNA MER1_type 56 176 -43 3 2082 237 65 0 0 chr1 196273216 196273247 -922185 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 2082 555 325 124 46 chr1 196273269 196273461 -921971 - L1MB7 LINE L1 -2029 4117 3921 3 2082 1213 74 0 0 chr1 196273461 196273609 -921823 - B1_Mus1 SINE Alu 0 148 1 3 2082 555 325 124 46 chr1 196273609 196273964 -921468 - L1MB7 LINE L1 -2226 3920 3527 3 2082 320 273 51 68 chr1 196274455 196274573 -920859 - PB1D10 SINE Alu -1 116 1 3 2082 1981 254 32 23 chr1 196274607 196275079 -920353 + Lx6 LINE L1 6977 7452 -8 3 2082 478 129 32 21 chr1 196275252 196275347 -920085 - ORR1B1 LTR MaLR -258 136 41 3 2082 251 172 69 0 chr1 196275588 196275646 -919786 + L2a LINE L2 3103 3164 -262 3 2082 811 294 25 116 chr1 196276582 196276867 -918565 + B4 SINE B4 18 276 -16 3 2082 335 60 20 0 chr1 196276875 196276925 -918507 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 2082 544 221 18 0 chr1 196278603 196278716 -916716 + MER94 DNA AcHobo 18 132 -2 4 2082 195 42 0 0 chr1 196280461 196280485 -914947 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 2082 321 350 13 101 chr1 196282546 196282705 -912727 + MIRb SINE MIR 101 245 -23 4 2082 1576 171 242 3 chr1 196283058 196283368 -912064 + ORR1C2 LTR MaLR 1 384 0 4 2082 243 0 0 0 chr1 196284364 196284391 -911041 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 2082 4218 177 59 33 chr1 196284652 196284879 -910553 - RMER19B LTR ERVK -34 868 609 4 2082 225 0 0 0 chr1 196284879 196284904 -910528 + (TTG)n Simple_repeat Simple_repeat 1 25 0 4 2082 4218 190 60 40 chr1 196284904 196285577 -909855 - RMER19B LTR ERVK -294 608 3 4 2082 1558 171 60 11 chr1 196285579 196285862 -909570 - ORR1C1 LTR MaLR -81 297 1 4 2082 227 339 114 40 chr1 196286001 196286176 -909256 + MLT1E1 LTR MaLR 464 651 -3 4 2082 432 37 0 0 chr1 196286176 196286230 -909202 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 2082 291 28 0 0 chr1 196286908 196286944 -908488 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 2082 2045 220 12 21 chr1 196287533 196287951 -907481 + MTD LTR MaLR 1 414 -5 4 2082 5993 89 5 1 chr1 196288290 196289052 -906380 - L1_Mus3 LINE L1 -3 6635 5871 4 2082 218 32 0 31 chr1 196289630 196289662 -905770 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 4 2082 805 311 125 17 chr1 196289841 196290201 -905231 - MLT2B4 LTR ERVL -4 552 154 4 2082 658 295 103 105 chr1 196290416 196290825 -904607 + MTD LTR MaLR 5 412 -7 4 2082 449 363 31 15 chr1 196292863 196293059 -902373 - MER58A DNA MER1_type -23 201 3 4 2082 287 314 48 0 chr1 196293591 196293696 -901736 + L2a LINE L2 3273 3382 -44 4 2082 2607 72 84 3 chr1 196293710 196294042 -901390 + RLTR10D LTR ERVK 1 359 0 4 2082 37139 167 13 14 chr1 196294042 196300230 -895202 + IAP-d-int LTR ERVK 1 6184 -358 4 2082 2561 188 34 22 chr1 196300261 196300900 -894532 + IAP-d-int LTR ERVK 5632 6542 0 4 2082 2779 71 56 0 chr1 196300900 196301238 -894194 + RLTR10D LTR ERVK 1 357 -2 4 2082 202 162 28 66 chr1 196301488 196301594 -893838 + (TTATA)n Simple_repeat Simple_repeat 1 102 0 4 2082 220 143 63 0 chr1 196301528 196301591 -893841 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 2082 1688 237 32 34 chr1 196302358 196302765 -892667 - MTD LTR MaLR -8 411 6 4 2082 315 274 94 75 chr1 196303213 196303426 -892006 + LTR81B LTR ERV1? 1167 1383 -10 4 2082 634 305 68 55 chr1 196303760 196304200 -891232 + Lx9 LINE L1 7003 7448 -196 4 2082 288 239 139 17 chr1 196304835 196304950 -890482 - Charlie23a DNA MER1_type -32 307 179 4 2082 385 292 28 0 chr1 196304964 196305108 -890324 + (TATG)n Simple_repeat Simple_repeat 3 150 0 4 2082 627 39 0 0 chr1 196305348 196305426 -890006 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 4 2082 243 239 0 0 chr1 196305862 196305908 -889524 + MIR SINE MIR 10 55 -207 4 2082 198 222 0 0 chr1 196306034 196306088 -889344 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 4 2082 5317 142 76 23 chr1 196306786 196307696 -887736 + RMER17B LTR ERVK 1 958 0 4 2082 537 309 25 134 chr1 196308014 196308373 -887059 - MLT1B LTR MaLR -4 386 67 4 2082 604 267 33 0 chr1 196309074 196309224 -886208 - RMER15 LTR ERVL -14 561 407 4 2082 2238 152 24 8 chr1 196309432 196309810 -885622 - ORR1B1 LTR MaLR -8 386 3 4 2082 303 268 34 43 chr1 196310001 196310118 -885314 - MTEa LTR MaLR 0 379 264 4 2082 1839 180 90 28 chr1 196310637 196311025 -884407 - MTC LTR MaLR -8 413 2 4 2082 875 289 63 15 chr1 196311443 196311713 -883719 + B4A SINE B4 2 284 -8 4 2082 192 274 44 67 chr1 196311740 196311830 -883602 + MIRb SINE MIR 178 265 -3 4 2082 234 268 193 18 chr1 196312447 196312561 -882871 + MIRb SINE MIR 124 257 -11 4 2082 441 0 0 0 chr1 196312722 196312771 -882661 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 2082 442 301 51 7 chr1 196313251 196313388 -882044 + MIRb SINE MIR 66 208 -60 4 2082 251 242 61 71 chr1 196314733 196314831 -880601 + ORR1D1 LTR MaLR 278 374 0 4 2082 606 272 73 0 chr1 196315133 196315269 -880163 + B1_Mur1 SINE Alu 3 148 -1 4 2082 277 262 18 2 chr1 196315683 196315744 -879688 + tRNA-Ala-GCY_ tRNA tRNA 7 67 -8 4 2082 273 323 129 18 chr1 196315801 196315971 -879461 - MIR SINE MIR -51 211 23 4 2082 259 332 37 78 chr1 196316125 196316396 -879036 - L1ME1 LINE L1 -7 6172 5913 4 2082 1294 268 55 46 chr1 196316396 196316811 -878621 + MTD LTR MaLR 1 419 0 4 2082 1298 159 4 23 chr1 196316761 196317019 -878413 - ORR1A4 LTR MaLR 0 367 1 4 2082 1475 202 77 82 chr1 196317226 196317642 -877790 - RMER4B LTR ERVK -153 432 19 4 2082 514 345 76 18 chr1 196317826 196318151 -877281 - ORR1E LTR MaLR -4 366 6 4 2082 25 51 0 0 chr1 196318869 196318908 -876524 + AT_rich Low_complexity Low_complexity 1 39 0 4 2082 298 331 0 81 chr1 196319001 196319149 -876283 - Charlie15a DNA MER1_type -1 223 88 4 2082 328 296 0 12 chr1 196319203 196319285 -876147 + ID4 SINE ID 3 83 0 4 2082 310 314 41 25 chr1 196319371 196319492 -875940 + L2a LINE L2 3304 3426 0 4 2082 237 354 60 30 chr1 196320118 196320252 -875180 - MLT1H LTR MaLR 0 549 412 4 2082 237 279 0 16 chr1 196320392 196320454 -874978 - MLT1H LTR MaLR -113 277 217 4 2082 581 301 35 65 chr1 196320545 196320776 -874656 - MLT1H LTR MaLR -219 330 107 4 2082 480 312 35 69 chr1 196321323 196321526 -873906 + MIR3 SINE MIR 7 202 -6 4 2082 203 353 10 0 chr1 196322056 196322158 -873274 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 2082 555 16 0 0 chr1 196322375 196322439 -872993 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 2082 191 219 0 30 chr1 196323717 196323783 -871649 + GA-rich Low_complexity Low_complexity 3 66 0 4 2082 231 203 246 0 chr1 196323978 196324047 -871385 + MLT1E1 LTR MaLR 10 95 -559 4 2082 625 351 59 45 chr1 196324036 196324457 -870975 + MLT1E1 LTR MaLR 221 647 -7 4 2082 1027 302 53 32 chr1 196325206 196325585 -869847 + Lx7 LINE L1 6809 7195 -501 4 2082 228 328 16 74 chr1 196325725 196325847 -869585 + RMER1C Other Other 1225 1339 -3 4 2082 23 0 0 0 chr1 196325856 196325879 -869553 + AT_rich Low_complexity Low_complexity 1 23 0 4 2082 225 0 0 0 chr1 196326858 196326883 -868549 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 2082 261 0 0 0 chr1 196327147 196327176 -868256 + (T)n Simple_repeat Simple_repeat 1 29 0 4 2082 374 241 25 0 chr1 196327413 196327492 -867940 + ID4_ SINE ID 3 83 0 4 2082 287 292 52 10 chr1 196328062 196328159 -867273 + PB1D9 SINE Alu 19 119 -1 4 2082 1189 266 87 12 chr1 196328368 196328703 -866729 + MLT1A0 LTR MaLR 6 365 0 4 2082 213 314 54 5 chr1 196329202 196329288 -866144 + MIRc SINE MIR 90 179 -97 4 2082 772 294 44 47 chr1 196330916 196331191 -864241 - Lx9 LINE L1 -526 7118 6845 4 2082 523 340 22 83 chr1 196331190 196331466 -863966 + Lx9 LINE L1 7120 7378 -266 4 2082 362 224 13 0 chr1 196331949 196332025 -863407 + L3b LINE CR1 157 233 -249 4 2082 294 238 58 80 chr1 196333097 196333283 -862149 + MTE2b LTR MaLR 197 373 -6 4 2082 1318 269 79 0 chr1 196335691 196336007 -859425 - ORR1D2 LTR MaLR -9 361 21 4 2082 327 49 0 0 chr1 196336511 196336552 -858880 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 2082 698 260 49 20 chr1 196337352 196337556 -857876 - MTE2a LTR MaLR 0 379 170 4 2082 2535 177 14 5 chr1 196337569 196337994 -857438 - RMER19C LTR ERVK 0 611 183 4 2082 317 167 0 18 chr1 196337984 196338039 -857393 + RMER19C LTR ERVK 147 200 -411 4 2082 616 220 38 8 chr1 196338046 196338179 -857253 + MTE2a LTR MaLR 243 379 0 4 2082 384 173 27 0 chr1 196338194 196338269 -857163 - RMER19C LTR ERVK -534 77 1 4 2082 614 312 10 31 chr1 196338286 196338478 -856954 - MTE2a LTR MaLR -222 197 10 4 2082 5115 118 21 8 chr1 196338670 196339416 -856016 + RMER6A LTR ERVK 1 756 0 4 2082 408 20 0 0 chr1 196339729 196339778 -855654 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 2082 2078 60 7 11 chr1 196340346 196340617 -854815 - MTA_Mm LTR MaLR 0 396 127 4 2082 414 297 55 0 chr1 196341062 196341207 -854225 + L1MA7 LINE L1 6139 6291 0 4 2082 764 318 55 26 chr1 196341332 196341809 -853623 - MT2A LTR ERVL -8 525 73 4 2082 343 228 6 223 chr1 196341745 196341920 -853512 - MTE2b LTR MaLR -242 137 1 4 2082 330 26 0 0 chr1 196342097 196342136 -853296 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 2082 225 0 0 0 chr1 196342136 196342160 -853272 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 2082 1296 139 17 61 chr1 196344053 196344120 -851312 - URR1B DNA MER1_type -1 224 163 4 2082 2001 154 138 16 chr1 196344120 196344483 -850949 - MTB_Mm LTR MaLR 0 407 1 4 2082 1296 139 17 61 chr1 196344483 196344645 -850787 - URR1B DNA MER1_type -63 162 5 4 2083 180 271 100 0 chr1 196346001 196346071 -849361 - MIR3 SINE MIR -7 201 125 4 2083 335 309 113 65 chr1 196346301 196346529 -848903 + MIRb SINE MIR 19 260 -8 4 2083 245 328 27 81 chr1 196346890 196347039 -848393 - MIRb SINE MIR -65 203 63 4 2083 389 176 9 133 chr1 196348918 196349001 -846431 - RMER17B LTR ERVK -708 250 175 4 2083 315 0 0 0 chr1 196349001 196349036 -846396 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 2083 389 176 9 133 chr1 196349036 196349057 -846375 - RMER17B LTR ERVK -784 174 159 4 2083 185 300 146 62 chr1 196349102 196349198 -846234 + MER5A DNA MER1_type 51 154 -35 4 2083 236 217 0 0 chr1 196352845 196352891 -842541 + T-rich Low_complexity Low_complexity 40 85 0 4 2083 22 56 0 0 chr1 196353455 196353491 -841941 + AT_rich Low_complexity Low_complexity 1 36 0 4 2083 2708 95 23 131 chr1 196355492 196355965 -839467 + BGLII_Mus LTR ERVK 1 422 0 4 2083 181 226 95 16 chr1 196356046 196356109 -839323 - L2a LINE L2 -1 3425 3358 4 2083 531 341 69 51 chr1 196356133 196356408 -839024 + MLT1J2 LTR MaLR 21 300 -148 5 2083 4066 41 15 0 chr1 196356513 196356977 -838455 + L1Md_F3 LINE L1 6114 6584 0 5 2083 470 301 45 9 chr1 196357184 196357336 -838096 - MLT1C LTR MaLR -2 465 253 5 2083 36541 72 8 4 chr1 196357541 196363658 -831774 - L1Md_F2 LINE L1 -12 6570 446 5 2083 1041 109 0 0 chr1 196364741 196364888 -830544 - B1_Mus1 SINE Alu 0 148 2 5 2083 755 324 10 5 chr1 196365436 196365644 -829788 + ID_B1 SINE B4 9 217 -7 5 2083 626 289 25 12 chr1 196365718 196365879 -829553 + RSINE1 SINE B4 3 165 0 5 2083 414 175 0 0 chr1 196365879 196365959 -829473 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 2083 450 288 38 8 chr1 196366292 196366425 -829007 - MER5A1 DNA MER1_type -28 138 2 5 2083 592 229 16 25 chr1 196366748 196366869 -828563 + PB1D7 SINE Alu 1 120 0 5 2083 1817 21 0 0 chr1 196368961 196369154 -826278 + B2_Mm1t SINE B2 1 193 0 5 2083 348 24 0 0 chr1 196369154 196369195 -826237 + (A)n Simple_repeat Simple_repeat 1 41 0 5 2083 1300 80 11 6 chr1 196369707 196369884 -825548 - L1_Mus3 LINE L1 -2 6636 6459 5 2083 403 78 0 0 chr1 196369884 196369935 -825497 + L1_Mus3 LINE L1 6375 6425 -141 5 2083 361 204 80 6 chr1 196370059 196370222 -825210 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 5 2083 597 80 0 0 chr1 196370667 196370755 -824677 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 2083 195 100 0 0 chr1 196370819 196370849 -824583 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 5 2083 343 212 58 35 chr1 196370917 196371171 -824261 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 5 2083 324 48 0 0 chr1 196371258 196371300 -824132 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 2083 270 0 0 0 chr1 196371300 196371330 -824102 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 2083 791 314 5 50 chr1 196373295 196373513 -821919 - B3A SINE B2 -3 213 6 5 2083 189 0 0 0 chr1 196374943 196374964 -820468 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 2083 645 14 0 0 chr1 196375189 196375263 -820169 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 2083 225 224 70 12 chr1 196376171 196376257 -819175 + MER33 DNA MER1_type 127 217 -107 5 2083 586 337 0 47 chr1 196376263 196376434 -818998 + RSINE1 SINE B4 3 165 0 5 2083 221 371 9 19 chr1 196376647 196376754 -818678 + MIRb SINE MIR 102 207 -61 5 2083 244 342 68 59 chr1 196377107 196377343 -818089 + L2 LINE L2 2845 3082 -337 5 2083 193 217 0 21 chr1 196377605 196377652 -817780 - MIRc SINE MIR -107 161 116 5 2083 794 212 11 14 chr1 196377983 196378272 -817160 + CT-rich Low_complexity Low_complexity 1 288 0 5 2083 229 172 15 59 chr1 196378024 196378092 -817340 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 2083 180 0 0 0 chr1 196378272 196378292 -817140 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 2083 241 263 0 112 chr1 196378863 196378970 -816462 - ORR1A4 LTR MaLR -39 290 196 5 2083 363 315 98 90 chr1 196380045 196380300 -815132 + LTR16A1 LTR ERVL 198 454 -2 5 2083 207 0 0 0 chr1 196380460 196380483 -814949 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 2083 1154 81 0 0 chr1 196380484 196380620 -814812 - B1_Mus1 SINE Alu -12 136 1 5 2083 3766 166 65 64 chr1 196381078 196381969 -813463 - RMER17A2 LTR ERVK -14 892 1 5 2083 38 0 0 0 chr1 196383607 196383645 -811787 + AT_rich Low_complexity Low_complexity 1 38 0 5 2083 227 333 24 47 chr1 196384042 196384127 -811305 - ID4 SINE ID 0 83 1 5 2083 293 286 57 40 chr1 196384341 196384465 -810967 - MIRc SINE MIR -140 128 3 5 2083 189 74 0 0 chr1 196385153 196385180 -810252 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 5 2083 237 302 18 36 chr1 196385445 196385529 -809903 + MIRc SINE MIR 86 173 -89 5 2083 521 308 54 0 chr1 196386026 196386156 -809276 + ID_B1 SINE B4 85 221 -3 5 2083 210 264 0 36 chr1 196386157 196386212 -809220 + polypurine Low_complexity Low_complexity 1 53 0 5 2083 1855 174 41 32 chr1 196386333 196386678 -808754 + ORR1C1 LTR MaLR 1 348 -30 5 2083 1319 217 16 44 chr1 196388157 196388523 -806909 - RLTR15 LTR ERVK -3 356 1 5 2083 378 0 0 0 chr1 196388827 196388869 -806563 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 2083 1162 127 147 0 chr1 196389496 196389693 -805739 + URR1A DNA MER1_type 1 226 0 5 2083 2685 153 62 14 chr1 196390818 196391321 -804111 - RLTR11A2 LTR ERVK 0 527 1 5 2083 252 229 0 0 chr1 196391407 196391468 -803964 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 2083 2385 91 18 0 chr1 196391559 196391898 -803534 - Lx LINE L1 -2 6652 6308 5 2083 449 319 68 62 chr1 196392389 196392574 -802858 - MLT1E1 LTR MaLR -1 653 459 5 2083 1830 178 33 14 chr1 196392574 196392938 -802494 - ORR1D1 LTR MaLR -1 373 3 5 2083 449 332 94 64 chr1 196392938 196393252 -802180 - MLT1E1 LTR MaLR -196 458 34 5 2083 1101 100 0 0 chr1 196393416 196393576 -801856 - B2_Mm2 SINE B2 -33 162 3 5 2083 315 71 0 0 chr1 196394909 196394951 -800481 + (GGA)n Simple_repeat Simple_repeat 3 44 0 5 2083 786 288 15 25 chr1 196395099 196395295 -800137 - ID_B1 SINE B4 -24 200 7 5 2083 1157 71 0 0 chr1 196395377 196395518 -799914 + B1_Mus1 SINE Alu 2 142 -6 5 2083 203 302 176 15 chr1 196395629 196395760 -799672 - MIR SINE MIR -79 183 32 5 2083 244 339 108 51 chr1 196396477 196396866 -798566 - L2a LINE L2 0 3426 3016 5 2083 223 340 32 13 chr1 196397675 196397830 -797602 + (TATG)n Simple_repeat Simple_repeat 4 161 0 5 2083 293 363 6 6 chr1 196397858 196398076 -797356 + (TATG)n Simple_repeat Simple_repeat 1 218 0 5 2083 912 287 124 14 chr1 196398096 196398541 -796891 - RMER5 LTR ERV1 -2 532 39 5 2083 1062 108 0 0 chr1 196398725 196398864 -796568 + B1_Mus1 SINE Alu 1 139 -9 5 2083 307 321 122 20 chr1 196400635 196400832 -794600 + L2c LINE L2 2734 2950 -469 5 2083 189 329 49 25 chr1 196400986 196401067 -794365 + L2c LINE L2 3126 3208 -179 5 2083 1431 232 128 3 chr1 196401114 196401482 -793950 + MTD LTR MaLR 6 419 0 5 2083 333 68 0 0 chr1 196401646 196401690 -793742 + (CATA)n Simple_repeat Simple_repeat 3 46 0 5 2083 221 326 35 48 chr1 196402105 196402250 -793182 - MIRc SINE MIR -112 156 14 5 2083 221 163 0 0 chr1 196402530 196402573 -792859 + A-rich Low_complexity Low_complexity 1 43 0 5 2083 1169 112 26 21 chr1 196402660 196402852 -792580 - B2_Mm1a SINE B2 0 193 1 5 2083 4079 151 41 6 chr1 196403045 196403662 -791770 + Lx LINE L1 5928 6554 -100 5 2083 216 0 0 0 chr1 196403662 196403686 -791746 + (AGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 2083 4079 151 41 6 chr1 196403686 196403770 -791662 + Lx LINE L1 6555 6653 -1 5 2083 244 297 0 15 chr1 196405233 196405298 -790134 - MIRc SINE MIR -170 98 35 5 2083 479 272 0 8 chr1 196405693 196405959 -789473 + (CA)n Simple_repeat Simple_repeat 1 263 0 5 2083 238 299 34 11 chr1 196407120 196407208 -788224 + L2 LINE L2 2864 2953 -466 5 2083 273 318 86 20 chr1 196407321 196407472 -787960 + RSINE1 SINE B4 2 162 -3 5 2083 26 0 0 0 chr1 196407494 196407520 -787912 + AT_rich Low_complexity Low_complexity 1 26 0 5 2083 333 0 0 0 chr1 196409873 196409910 -785522 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 2083 1758 197 10 51 chr1 196410162 196410552 -784880 - ORR1D1 LTR MaLR 0 374 1 5 2083 297 292 0 43 chr1 196412745 196412931 -782501 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 5 2083 227 133 0 22 chr1 196414243 196414289 -781143 + CT-rich Low_complexity Low_complexity 3 47 0 5 2083 345 47 0 0 chr1 196415855 196415898 -779534 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 2083 333 354 8 0 chr1 196415925 196416055 -779377 + (CA)n Simple_repeat Simple_repeat 1 131 0 5 2083 240 214 86 0 chr1 196416709 196416779 -778653 + MIRm SINE MIR 82 157 -119 5 2083 191 128 51 0 chr1 196418811 196418850 -776582 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 5 2083 261 0 0 0 chr1 196418890 196418919 -776513 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 2083 294 304 98 0 chr1 196419031 196419133 -776299 - PB1D7 SINE Alu -5 115 4 5 2083 784 244 73 0 chr1 196419133 196419208 -776224 - B4 SINE B4 -204 88 2 5 2083 1521 164 24 80 chr1 196419752 196420089 -775343 + ORR1C1 LTR MaLR 1 318 -60 5 2083 281 351 22 50 chr1 196420921 196421101 -774331 + MIR SINE MIR 24 198 -64 5 2083 280 282 0 40 chr1 196421322 196421396 -774036 - PB1D7 SINE Alu -2 118 48 5 2083 22 0 0 0 chr1 196421468 196421490 -773942 + AT_rich Low_complexity Low_complexity 1 22 0 5 2083 993 120 0 3 chr1 196421511 196421877 -773555 + (GA)n Simple_repeat Simple_repeat 1 364 0 5 2083 558 223 27 0 chr1 196421901 196422013 -773419 - B3A SINE B2 -61 137 23 5 2083 454 250 31 67 chr1 196422510 196422703 -772729 - MER53 DNA hAT -2 191 6 5 2083 212 77 26 0 chr1 196423113 196423152 -772280 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 2083 932 95 0 20 chr1 196424592 196424743 -770689 + URR1A DNA MER1_type 79 226 0 5 2083 5990 53 48 4 chr1 196425325 196426077 -769355 - L1_Mus1 LINE L1 0 6567 5783 5 2083 10069 70 3 5 chr1 196426077 196428136 -767296 - L1Md_F2 LINE L1 -5 6577 4521 5 2083 317 267 47 19 chr1 196428466 196428573 -766859 + MLT1C LTR MaLR 68 177 -290 5 2083 742 231 50 15 chr1 196429056 196429237 -766195 - ORR1C2 LTR MaLR -2 382 194 5 2083 1452 44 0 0 chr1 196429237 196429417 -766015 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 2083 742 231 50 15 chr1 196429417 196429437 -765995 - ORR1C2 LTR MaLR -191 193 174 5 2083 971 158 17 101 chr1 196429470 196429729 -765703 - ORR1B1 LTR MaLR -113 261 1 5 2083 2431 222 111 5 chr1 196429757 196430389 -765043 - ORR1B1-int LTR MaLR 0 1509 811 5 2083 281 293 55 8 chr1 196430785 196430913 -764519 + MIR SINE MIR 23 162 -106 5 2083 2196 164 85 13 chr1 196431431 196431821 -763611 + MTC LTR MaLR 1 418 -3 5 2083 2001 169 64 10 chr1 196432681 196433074 -762358 - ORR1B1 LTR MaLR -8 386 1 5 2083 539 301 0 20 chr1 196433138 196433284 -762148 - B1F2 SINE Alu -2 147 5 6 2083 183 156 0 0 chr1 196433622 196433654 -761778 + A-rich Low_complexity Low_complexity 1 32 0 6 2083 4925 180 78 13 chr1 196434300 196434439 -760993 + Lx4B LINE L1 5708 5848 -1152 6 2083 3562 18 2 0 chr1 196434439 196434834 -760598 - MTA_Mm LTR MaLR 0 396 1 6 2083 4925 184 80 13 chr1 196434834 196435840 -759592 + Lx4B LINE L1 5849 6947 -53 6 2083 208 314 70 0 chr1 196436179 196436259 -759173 - MIRc SINE MIR -96 112 30 6 2083 243 0 0 0 chr1 196436272 196436299 -759133 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 2083 1134 55 0 0 chr1 196437781 196437927 -757505 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 6 2083 586 320 9 126 chr1 196437927 196438149 -757283 - ID_B1 SINE B4 -14 210 15 6 2083 1415 77 16 0 chr1 196438151 196438333 -757099 + B2_Mm2 SINE B2 4 188 -7 6 2083 1025 215 295 12 chr1 196440962 196441362 -754070 + L1MA6 LINE L1 5782 6294 -6 6 2083 429 239 54 49 chr1 196441562 196441747 -753685 - Lx7 LINE L1 0 7696 7511 6 2083 839 179 21 0 chr1 196441845 196441990 -753442 - Lx7 LINE L1 -346 7350 7203 6 2083 1134 211 147 15 chr1 196441991 196442275 -753157 - RLTR20B3 LTR ERVK -4 523 215 6 2083 474 18 0 0 chr1 196442275 196442330 -753102 + (TCC)n Simple_repeat Simple_repeat 2 56 0 6 2083 902 201 168 28 chr1 196442330 196442499 -752933 - RLTR20B3 LTR ERVK -309 251 20 6 2083 719 214 14 7 chr1 196442504 196442650 -752782 - Lx7 LINE L1 -489 7207 7061 6 2083 835 171 0 21 chr1 196442653 196442796 -752636 - Lx7 LINE L1 -896 6800 6661 6 2083 1364 91 38 0 chr1 196442809 196442995 -752437 - B2_Mm2 SINE B2 -1 194 2 6 2083 2723 148 115 15 chr1 196443038 196443561 -751871 + RMER15 LTR ERVL 1 575 0 6 2083 285 256 39 0 chr1 196444490 196444568 -750864 + L3 LINE CR1 4207 4287 -202 6 2083 579 258 0 8 chr1 196444643 196444764 -750668 + B1_Mur2 SINE Alu 7 126 -23 6 2083 733 54 13 57 chr1 196444846 196445004 -750428 + (TTCTC)n Simple_repeat Simple_repeat 2 152 0 6 2083 198 0 0 0 chr1 196449640 196449662 -745770 + (T)n Simple_repeat Simple_repeat 1 22 0 6 2083 196 222 18 53 chr1 196450582 196450639 -744793 + L3 LINE CR1 1659 1713 -2776 6 2083 339 85 0 0 chr1 196451119 196451166 -744266 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 2083 268 24 49 0 chr1 196452031 196452072 -743360 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 2083 272 61 0 58 chr1 196453050 196453102 -742330 + (T)n Simple_repeat Simple_repeat 1 49 0 6 2083 234 0 0 0 chr1 196454265 196454291 -741141 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 6 2083 22 35 0 0 chr1 196456389 196456418 -739014 + AT_rich Low_complexity Low_complexity 1 29 0 6 2083 234 219 47 0 chr1 196458997 196459061 -736371 - MIRc SINE MIR -31 237 171 6 2083 244 281 37 0 chr1 196460644 196460726 -734706 - L1M5 LINE L1 -273 5851 5767 6 2083 438 36 0 0 chr1 196462570 196462626 -732806 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 2083 368 355 35 73 chr1 196462870 196462968 -732464 - MLT1B LTR MaLR -108 282 180 6 2083 929 133 231 0 chr1 196462968 196463141 -732291 - B3 SINE B2 -3 213 1 6 2083 368 355 35 73 chr1 196463141 196463328 -732104 - MLT1B LTR MaLR -211 179 9 6 2083 572 218 118 22 chr1 196464645 196464781 -730651 + B1_Mur2 SINE Alu 1 149 0 6 2083 242 38 57 19 chr1 196464831 196464884 -730548 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 6 2083 227 217 130 0 chr1 196469547 196469616 -725816 + MIRc SINE MIR 44 121 -147 6 2083 503 224 58 88 chr1 196471429 196471444 -723988 + ID SINE ID 75 85 -139 6 2083 357 271 117 29 chr1 196471444 196471581 -723851 + B1F1 SINE Alu 1 149 0 6 2083 244 290 102 31 chr1 196471670 196471798 -723634 - L2a LINE L2 -327 3099 2963 6 2083 243 377 73 18 chr1 196471812 196472031 -723401 + MIRb SINE MIR 22 252 -16 6 2083 1133 144 124 0 chr1 196472422 196472623 -722809 - URR1A DNA MER1_type 0 226 1 6 2083 185 339 33 25 chr1 196472931 196473052 -722380 - MIR SINE MIR -62 200 79 6 2083 250 352 47 9 chr1 196473229 196473335 -722097 - MIR SINE MIR -61 147 38 6 2083 275 283 0 0 chr1 196473449 196473509 -721923 - MER63B DNA AcHobo -40 396 337 6 2083 804 220 21 73 chr1 196474183 196474374 -721058 - ORR1D1 LTR MaLR -193 181 1 6 2083 489 223 10 10 chr1 196474736 196474840 -720592 + PB1D10 SINE Alu 7 110 -7 6 2083 290 325 0 0 chr1 196474851 196474931 -720501 + ID4_ SINE ID 2 81 -2 6 2083 600 53 0 0 chr1 196474932 196475008 -720424 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 6 2083 186 234 21 21 chr1 196475325 196475373 -720059 - L4 LINE RTE -203 1826 1779 6 2084 198 155 44 147 chr1 196477569 196477637 -717795 - MIR3 SINE MIR -27 181 121 6 2084 360 0 0 0 chr1 196477936 196477976 -717456 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 2084 499 264 8 8 chr1 196479155 196479281 -716151 - MIR SINE MIR -13 249 124 6 2084 229 348 194 24 chr1 196479330 196479495 -715937 + L3 LINE CR1 4186 4378 -111 6 2084 1972 183 21 16 chr1 196479611 196479983 -715449 + ORR1D1 LTR MaLR 1 374 0 6 2084 3031 49 0 0 chr1 196480017 196480384 -715048 + IAPLTR1_Mm LTR ERVK 1 367 0 6 2084 3356 26 5 0 chr1 196480401 196480787 -714645 - RLTR10 LTR ERVK -2 388 1 6 2084 16862 24 20 0 chr1 196480789 196482705 -712727 - RLTR10-int LTR ERVK -3 1984 1 6 2084 3362 28 5 0 chr1 196482705 196483093 -712339 - RLTR10 LTR ERVK 0 390 1 6 2084 1617 199 29 92 chr1 196485849 196486231 -709201 + ORR1D1 LTR MaLR 1 358 -16 6 2084 366 266 62 14 chr1 196486232 196486377 -709055 - L2a LINE L2 -50 3376 3225 6 2084 191 103 26 0 chr1 196487433 196487472 -707960 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 2084 441 81 0 0 chr1 196487983 196488045 -707387 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 2084 290 309 63 72 chr1 196488509 196488732 -706700 - MIRb SINE MIR -29 239 19 6 2084 1044 175 58 6 chr1 196488785 196489083 -706349 - RMER15 LTR ERVL 0 575 230 6 2084 637 108 11 0 chr1 196489079 196489172 -706260 - RMER15 LTR ERVL -455 120 27 6 2084 180 0 0 0 chr1 196490309 196490329 -705103 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 6 2084 22 0 0 0 chr1 196490391 196490413 -705019 + AT_rich Low_complexity Low_complexity 1 22 0 6 2084 180 311 13 63 chr1 196490773 196490852 -704580 + MIRb SINE MIR 45 119 -149 6 2084 21 0 0 0 chr1 196493659 196493680 -701752 + AT_rich Low_complexity Low_complexity 1 21 0 6 2084 1978 218 36 3 chr1 196494387 196494778 -700654 + MTD LTR MaLR 2 405 -14 6 2084 251 256 0 82 chr1 196494867 196494952 -700480 - RMER1C Other Other -13 1329 1252 6 2084 545 311 177 34 chr1 196494878 196494980 -700452 - Lx8 LINE L1 -2 7471 7344 6 2084 414 0 0 0 chr1 196494980 196495026 -700406 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 2084 545 311 177 34 chr1 196495026 196495330 -700102 - Lx8 LINE L1 -130 7343 7008 6 2084 1300 296 13 19 chr1 196495304 196495676 -699756 - Lx7 LINE L1 -781 6915 6546 6 2084 206 208 0 27 chr1 196495888 196495962 -699470 + (CATA)n Simple_repeat Simple_repeat 2 73 0 6 2084 416 259 51 17 chr1 196496521 196496639 -698793 + MER20 DNA MER1_type 98 219 0 6 2084 432 0 0 0 chr1 196496988 196497036 -698396 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 2084 704 328 30 22 chr1 196497488 196497753 -697679 + B4 SINE B4 3 270 -22 6 2084 408 118 0 0 chr1 196497753 196497821 -697611 + (CATA)n Simple_repeat Simple_repeat 3 70 0 6 2084 261 0 0 0 chr1 196497888 196497917 -697515 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 2084 354 23 0 0 chr1 196497934 196497977 -697455 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 2084 254 344 119 34 chr1 196498778 196499013 -696419 + MIRc SINE MIR 6 260 -8 6 2084 191 295 20 59 chr1 196499307 196499408 -696024 + L3 LINE CR1 1948 2044 -2445 6 2084 22 35 0 0 chr1 196499952 196499981 -695451 + AT_rich Low_complexity Low_complexity 1 29 0 6 2084 656 145 0 8 chr1 196500288 196500406 -695026 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 2084 189 0 0 0 chr1 196501022 196501043 -694389 + (T)n Simple_repeat Simple_repeat 1 21 0 2 2084 489 17 0 0 chr1 196501206 196501264 -694168 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 2084 1417 269 98 38 chr1 196502723 196503420 -692012 - L1MA4A LINE L1 -368 5935 5186 4 2084 287 285 160 5 chr1 196504922 196505043 -690389 - Lx8 LINE L1 0 7473 7336 5 2084 291 54 0 0 chr1 196505043 196505080 -690352 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 2084 287 285 160 5 chr1 196505080 196505152 -690280 - Lx8 LINE L1 -138 7335 7251 5 2084 182 345 36 17 chr1 196506249 196506369 -689063 + MIRc SINE MIR 43 160 -102 7 2084 245 316 55 92 chr1 196507890 196508054 -687378 - MER5A DNA MER1_type -1 188 31 8 2084 397 276 121 40 chr1 196508860 196509034 -686398 - MER5A DNA MER1_type 0 189 2 9 2084 351 265 194 11 chr1 196509222 196509413 -686019 - MIR SINE MIR -10 252 27 1 2084 480 35 0 0 chr1 196509735 196509793 -685639 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 2084 182 119 48 0 chr1 196510605 196510647 -684785 + T-rich Low_complexity Low_complexity 2 45 0 1 2084 1731 21 0 0 chr1 196510655 196510848 -684584 - B2_Mm1t SINE B2 0 193 1 1 2084 508 277 64 35 chr1 196511801 196511973 -683459 + B4 SINE B4 2 178 -114 1 2084 518 132 12 0 chr1 196513918 196514001 -681431 + ORR1B2 LTR MaLR 1 84 -283 1 2084 211 277 70 35 chr1 196515324 196515410 -680022 + L2c LINE L2 3230 3318 -69 1 2084 186 43 0 0 chr1 196516382 196516405 -679027 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 2084 594 0 0 0 chr1 196517458 196517524 -677908 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 2084 1563 226 100 3 chr1 196517573 196517942 -677490 + MTD LTR MaLR 1 405 -14 1 2084 228 312 12 12 chr1 196518072 196518153 -677279 - L2a LINE L2 -16 3410 3330 2 2084 1247 205 158 19 chr1 196518398 196518418 -677014 + ORR1D1 LTR MaLR 5 24 -350 2 2084 528 59 0 0 chr1 196518418 196518486 -676946 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 2084 1247 205 158 19 chr1 196518486 196518788 -676644 + ORR1D1 LTR MaLR 25 371 -3 2 2084 495 118 0 0 chr1 196521769 196521845 -673587 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 2084 297 297 67 13 chr1 196523130 196523280 -672152 + MIR SINE MIR 65 222 -40 2 2084 188 247 84 63 chr1 196523426 196523521 -671911 - MIRm SINE MIR -100 176 80 2 2084 180 176 0 0 chr1 196524417 196524451 -670981 + GA-rich Low_complexity Low_complexity 2 35 0 2 2084 189 0 0 0 chr1 196527154 196527175 -668257 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 2084 186 143 0 0 chr1 196527640 196527675 -667757 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 2 2084 246 242 16 0 chr1 196528453 196528515 -666917 - L4 LINE RTE -520 1509 1447 2 2084 238 314 0 14 chr1 196531561 196531646 -663786 + MIR SINE MIR 80 164 -44 3 2084 279 0 0 0 chr1 196532154 196532185 -663247 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 2084 220 182 52 17 chr1 196532202 196532380 -663052 + (TG)n Simple_repeat Simple_repeat 1 184 0 3 2084 190 204 44 0 chr1 196532445 196532558 -662874 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 2084 213 254 44 15 chr1 196532590 196532726 -662706 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 2084 218 314 58 17 chr1 196532837 196532957 -662475 - L2 LINE L2 -575 2844 2720 3 2084 432 0 0 0 chr1 196533730 196533778 -661654 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 2084 546 16 0 0 chr1 196535226 196535289 -660143 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 2084 292 241 33 54 chr1 196535502 196535686 -659746 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 2084 197 169 12 35 chr1 196535705 196535791 -659641 + (CATA)n Simple_repeat Simple_repeat 4 87 0 3 2084 221 318 57 34 chr1 196537422 196537510 -657922 - MER5B DNA MER1_type -3 175 86 3 2084 294 289 9 71 chr1 196538006 196538118 -657314 + PB1D10 SINE Alu 13 117 0 3 2084 219 308 0 15 chr1 196538119 196538185 -657247 + GA-rich Low_complexity Low_complexity 2 66 0 3 2084 912 271 72 0 chr1 196540073 196540309 -655123 - B4 SINE B4 0 292 40 4 2084 219 250 54 0 chr1 196540389 196540445 -654987 - B4A SINE B4 -233 59 1 4 2084 317 229 14 0 chr1 196540547 196540617 -654815 + ID4 SINE ID 7 77 -6 4 2084 1235 207 5 0 chr1 196542057 196542279 -653153 + URR1B DNA MER1_type 2 224 -1 4 2084 468 0 0 0 chr1 196543254 196543306 -652126 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 2084 384 22 0 0 chr1 196543307 196543352 -652080 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 2084 234 116 0 0 chr1 196543360 196543403 -652029 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 2084 316 272 138 33 chr1 196544150 196544302 -651130 + MIRb SINE MIR 89 256 -12 4 2084 626 234 65 75 chr1 196544928 196545127 -650305 + B3A SINE B2 2 198 0 4 2084 417 167 0 0 chr1 196545983 196546085 -649347 + CT-rich Low_complexity Low_complexity 2 103 0 4 2084 315 0 0 0 chr1 196546085 196546120 -649312 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 2084 22 0 0 0 chr1 196547508 196547530 -647902 + AT_rich Low_complexity Low_complexity 1 22 0 5 2084 365 281 45 39 chr1 196548194 196548372 -647060 + MIR SINE MIR 76 254 -8 5 2084 242 362 8 30 chr1 196548580 196548711 -646721 - MIRc SINE MIR -109 159 32 5 2084 1196 62 0 6 chr1 196548882 196549045 -646387 + (GAAA)n Simple_repeat Simple_repeat 1 162 0 5 2084 182 341 37 0 chr1 196551551 196551633 -643799 + MIRm SINE MIR 180 264 -12 5 2084 246 308 61 20 chr1 196551704 196551893 -643539 + MIRb SINE MIR 34 219 -43 5 2084 284 236 0 40 chr1 196552796 196552871 -642561 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 2084 409 298 107 61 chr1 196555911 196556256 -639176 + L1MB8 LINE L1 5818 6168 -16 5 2084 282 119 0 0 chr1 196559765 196559807 -635625 + 5S rRNA rRNA 1 42 -79 5 2084 275 228 60 60 chr1 196561157 196561241 -634191 - MIRc SINE MIR -125 143 60 5 2084 354 250 96 39 chr1 196561583 196561687 -633745 + PB1D7 SINE Alu 6 115 -5 6 2084 1083 129 0 0 chr1 196561701 196561879 -633553 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 6 2084 416 216 10 10 chr1 196561935 196562033 -633399 - Tigger5 DNA MER2_type -121 2285 2188 6 2084 647 208 16 8 chr1 196562088 196562214 -633218 - B1_Mur3 SINE Alu -9 140 14 6 2084 335 333 86 23 chr1 196562217 196562231 -633201 - MER47B DNA MER2_type -141 277 265 6 2084 207 0 0 0 chr1 196562231 196562254 -633178 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 2084 368 332 93 16 chr1 196562254 196562460 -632972 - Tigger5 DNA MER2_type -154 264 43 6 2084 274 345 89 18 chr1 196564898 196565066 -630366 + MIRb SINE MIR 41 220 -48 6 2084 219 193 88 0 chr1 196567744 196567801 -627631 + PB1D10 SINE Alu 49 110 -7 6 2084 557 294 52 0 chr1 196568504 196568715 -626717 - MER33 DNA MER1_type -102 222 1 6 2084 321 26 0 0 chr1 196568839 196568877 -626555 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 2084 240 258 63 16 chr1 196569711 196569774 -625658 + B4 SINE B4 58 123 -169 6 2084 246 32 0 0 chr1 196569961 196569992 -625440 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 2084 605 217 6 17 chr1 196569994 196570172 -625260 + (TA)n Simple_repeat Simple_repeat 1 176 0 7 2084 199 376 28 37 chr1 196570403 196570621 -624811 - L3 LINE CR1 -552 3937 3722 7 2084 182 191 0 21 chr1 196570839 196570887 -624545 + CT-rich Low_complexity Low_complexity 3 49 0 7 2084 546 257 19 71 chr1 196570894 196571049 -624383 - B1F SINE Alu -2 147 1 7 2084 272 295 253 7 chr1 196572778 196572928 -622504 + MIRc SINE MIR 77 263 -5 7 2084 448 332 70 10 chr1 196575052 196575253 -620179 - MIR SINE MIR -28 234 22 7 2084 1368 49 0 0 chr1 196575703 196576335 -619097 + (CA)n Simple_repeat Simple_repeat 1 632 0 7 2084 202 273 94 47 chr1 196580021 196580148 -615284 - MIR3 SINE MIR -71 137 5 7 2084 274 241 0 0 chr1 196580204 196580262 -615170 - MER63D DNA AcHobo -682 379 322 7 2084 184 327 18 0 chr1 196581521 196581576 -613856 + L2c LINE L2 3266 3321 -66 8 2084 355 274 8 42 chr1 196583285 196583403 -612029 + MER5A DNA MER1_type 6 119 -70 8 2084 260 254 16 0 chr1 196584762 196584825 -610607 + CT-rich Low_complexity Low_complexity 1 64 0 8 2084 312 27 0 0 chr1 196584842 196584879 -610553 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 2084 336 344 108 27 chr1 196585421 196585717 -609715 - MER2 DNA MER2_type 0 345 26 8 2084 1236 71 0 6 chr1 196585830 196586001 -609431 + B2_Mm2 SINE B2 2 171 -24 8 2084 405 206 0 0 chr1 196586142 196586234 -609198 + (CA)n Simple_repeat Simple_repeat 2 93 0 8 2084 336 102 0 0 chr1 196587212 196587261 -608171 + (TCTCCC)n Simple_repeat Simple_repeat 5 53 0 8 2084 252 86 0 0 chr1 196587381 196587416 -608016 + (A)n Simple_repeat Simple_repeat 1 35 0 8 2084 616 34 57 0 chr1 196587714 196587802 -607630 + B2_Mm1a SINE B2 97 189 -4 8 2084 212 0 36 0 chr1 196588052 196588080 -607352 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 2084 752 312 73 11 chr1 196589716 196589988 -605444 + B4A SINE B4 1 289 -3 9 2084 198 0 0 0 chr1 196590261 196590283 -605149 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 2084 313 307 114 0 chr1 196592451 196592617 -602815 - MER2 DNA MER2_type -58 287 103 9 2084 226 345 71 0 chr1 196593247 196593360 -602072 - MIRb SINE MIR -108 160 40 9 2084 389 312 77 84 chr1 196596059 196596486 -598946 - L1MC4a LINE L1 -15 7867 7444 9 2084 636 302 113 32 chr1 196596527 196596961 -598471 + L1MC4 LINE L1 7034 7502 -540 9 2084 235 369 12 0 chr1 196597151 196597235 -598197 - MIR SINE MIR -82 126 42 9 2084 279 0 0 0 chr1 196598556 196598587 -596845 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 2084 1765 100 53 68 chr1 196600897 196601220 -594212 - ORR1A3 LTR MaLR -8 318 1 9 2084 237 250 14 14 chr1 196601267 196601336 -594096 + PB1D7 SINE Alu 46 114 -6 1 2084 370 0 40 0 chr1 196601336 196601386 -594046 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 2084 542 291 7 28 chr1 196602800 196602945 -592487 - B3A SINE B2 -54 144 3 1 2084 473 286 25 55 chr1 196603369 196603569 -591863 - L2 LINE L2 -941 2478 2285 1 2084 1882 200 0 30 chr1 196604998 196605369 -590063 + MTC LTR MaLR 1 360 -61 1 2084 254 340 11 0 chr1 196606296 196606390 -589042 - MIRc SINE MIR -104 164 70 1 2084 348 164 0 0 chr1 196606456 196606523 -588909 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 1 2085 314 331 35 18 chr1 196609258 196609428 -586004 + MIRc SINE MIR 2 177 -31 1 2085 231 36 0 0 chr1 196609476 196609504 -585928 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 2085 404 324 9 0 chr1 196609913 196610018 -585414 + PB1 SINE Alu 14 119 -8 1 2085 764 168 5 32 chr1 196610024 196610209 -585223 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 2085 189 0 0 0 chr1 196611622 196611643 -583789 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 2085 324 0 0 0 chr1 196611643 196611678 -583754 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 2085 285 300 83 28 chr1 196613870 196614014 -581418 - MIR3 SINE MIR -7 201 50 1 2085 347 296 42 25 chr1 196614039 196614157 -581275 + PB1D9 SINE Alu 1 120 0 1 2085 180 143 0 0 chr1 196614159 196614166 -581266 + (CAAAAA)n Simple_repeat Simple_repeat 2 8 0 1 2085 1144 68 7 20 chr1 196614166 196614316 -581116 + B1_Mus1 SINE Alu 1 148 0 1 2085 180 143 0 0 chr1 196614316 196614343 -581089 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 1 2085 214 292 27 14 chr1 196616745 196616818 -578614 + MIRc SINE MIR 70 143 -125 1 2085 216 269 38 13 chr1 196617338 196617417 -578015 - MIR3 SINE MIR -39 169 89 1 2085 445 309 149 27 chr1 196617810 196618106 -577326 - MER74A LTR ERVL -204 354 23 1 2085 306 0 0 0 chr1 196618829 196618863 -576569 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 2085 180 321 25 13 chr1 196619698 196619777 -575655 + L2b LINE L2 3296 3375 0 1 2085 672 269 109 88 chr1 196622381 196622666 -572766 + B4 SINE B4 1 291 -1 1 2085 232 281 61 9 chr1 196624314 196624429 -571003 - MER3 DNA MER1_type -62 147 27 1 2085 226 289 0 0 chr1 196625246 196625298 -570134 - MIRb SINE MIR -158 110 59 1 2085 198 0 0 0 chr1 196628671 196628693 -566739 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 2085 239 180 20 0 chr1 196628947 196628997 -566435 - L2a LINE L2 0 3426 3376 1 2085 404 292 41 7 chr1 196629095 196629240 -566192 - MIR SINE MIR -7 255 106 1 2085 465 76 0 0 chr1 196629351 196629417 -566015 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 2085 228 411 24 6 chr1 196630468 196630632 -564800 + MIRb SINE MIR 20 186 -82 1 2085 476 227 111 20 chr1 196630647 196630845 -564587 - MER33 DNA MER1_type -5 319 104 1 2085 315 0 0 0 chr1 196630845 196630880 -564552 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 2085 401 0 20 0 chr1 196630881 196630930 -564502 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 2085 2765 15 0 0 chr1 196631616 196631954 -563478 + ORR1A0 LTR MaLR 1 338 -8 1 2085 760 189 7 27 chr1 196632092 196632239 -563193 - B1_Mur4 SINE Alu -5 145 2 1 2085 223 72 0 45 chr1 196633986 196634030 -561402 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 2085 258 33 0 0 chr1 196634224 196634254 -561178 - L1_Mus2 LINE L1 -324 6242 6213 1 2085 584 287 63 30 chr1 196636586 196636823 -558609 - MIR SINE MIR -5 257 13 1 2085 765 171 0 0 chr1 196643998 196644144 -551288 + (TA)n Simple_repeat Simple_repeat 1 146 0 1 2085 230 140 0 39 chr1 196645463 196645515 -549917 + A-rich Low_complexity Low_complexity 2 51 0 1 2085 26 0 0 0 chr1 196645611 196645637 -549795 + AT_rich Low_complexity Low_complexity 1 26 0 1 2085 378 0 0 0 chr1 196646328 196646370 -549062 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 2085 1983 114 6 66 chr1 196646920 196647258 -548174 + ORR1A3 LTR MaLR 1 319 -7 1 2085 3914 147 58 5 chr1 196647258 196647915 -547517 - RLTR17 LTR ERVK 0 692 1 1 2085 181 330 108 30 chr1 196648174 196648377 -547055 + MIRb SINE MIR 34 252 -16 1 2085 257 320 0 0 chr1 196648599 196648677 -546755 + ID_B1 SINE B4 94 171 -53 1 2085 278 282 8 0 chr1 196648680 196648811 -546621 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 2085 295 244 138 32 chr1 196648838 196649089 -546343 + L1PB4 LINE L1 5672 5924 -376 1 2085 360 0 0 0 chr1 196649143 196649183 -546249 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 2085 315 252 168 0 chr1 196649525 196649632 -545800 - L1M3 LINE L1 -1263 4877 4753 1 2085 22 0 0 0 chr1 196650615 196650637 -544795 + AT_rich Low_complexity Low_complexity 1 22 0 1 2085 4666 152 33 63 chr1 196651074 196651852 -543580 + RMER19B LTR ERVK 1 762 -140 1 2085 1796 74 58 4 chr1 196651852 196652109 -543323 + L1_Mus2 LINE L1 6294 6564 -2 1 2085 4666 152 33 63 chr1 196652109 196652260 -543172 + RMER19B LTR ERVK 763 902 0 1 2085 187 348 115 6 chr1 196653969 196654125 -541307 - MIRb SINE MIR -43 225 53 1 2085 827 191 7 0 chr1 196656579 196656720 -538712 + B1_Mm SINE Alu 1 142 -5 1 2085 24 0 0 0 chr1 196656772 196656796 -538636 + AT_rich Low_complexity Low_complexity 1 24 0 1 2085 583 261 95 11 chr1 196656805 196656995 -538437 + B3 SINE B2 1 206 -10 1 2085 439 271 0 27 chr1 196657031 196657141 -538291 + RSINE1 SINE B4 21 127 -38 1 2085 1230 201 167 108 chr1 196657202 196657638 -537794 + MT2A LTR ERVL 1 462 -71 1 2085 585 101 0 0 chr1 196657808 196657907 -537525 + (TG)n Simple_repeat Simple_repeat 1 99 0 1 2085 850 186 0 0 chr1 196658061 196658201 -537231 + B1_Mus1 SINE Alu 1 140 -8 1 2085 261 151 0 0 chr1 196658219 196658272 -537160 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 2085 4505 132 9 13 chr1 196658375 196659056 -536376 - RLTR33 LTR ERVK 0 678 1 1 2085 1927 136 13 0 chr1 196659180 196659496 -535936 + ORR1A2 LTR MaLR 1 320 -7 1 2085 652 257 128 73 chr1 196660475 196660748 -534684 + ORR1D1 LTR MaLR 85 372 -2 1 2085 306 0 0 0 chr1 196662399 196662433 -532999 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 2085 295 289 107 23 chr1 196662876 196663007 -532425 + MER5A DNA MER1_type 17 158 -31 1 2085 285 364 65 7 chr1 196663083 196663238 -532194 - MER5A DNA MER1_type -19 170 7 1 2085 383 257 18 18 chr1 196663414 196663525 -531907 - MLT1B LTR MaLR -36 354 244 1 2085 306 307 16 16 chr1 196663784 196663913 -531519 + B1F SINE Alu 21 149 0 1 2085 393 256 0 0 chr1 196663916 196663998 -531434 + ID4_ SINE ID 2 83 0 1 2085 359 295 109 11 chr1 196664896 196665071 -530361 - L2a LINE L2 -7 3419 3228 1 2085 26 0 0 0 chr1 196665200 196665226 -530206 + AT_rich Low_complexity Low_complexity 1 26 0 1 2085 483 231 58 38 chr1 196665244 196665387 -530045 + MT2A LTR ERVL 1 133 -451 1 2085 276 191 0 0 chr1 196665407 196665454 -529978 + MT2A LTR ERVL 99 145 -388 1 2085 6173 139 64 38 chr1 196667236 196668383 -527049 - RMER12 LTR ERVK -107 1215 29 1 2085 1957 155 6 33 chr1 196668383 196668717 -526715 + ORR1A2 LTR MaLR 1 325 -2 1 2085 6173 139 64 38 chr1 196668717 196668753 -526679 - RMER12 LTR ERVK -1294 28 1 1 2085 243 0 0 0 chr1 196669248 196669275 -526157 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 2085 283 311 49 12 chr1 196669557 196669720 -525712 + L1MD3 LINE L1 7239 7407 -588 1 2085 4393 202 47 52 chr1 196669706 196671623 -523809 + Lx5 LINE L1 5114 7029 -21 1 2085 243 0 0 0 chr1 196671623 196671650 -523782 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1 2085 618 314 200 0 chr1 196671834 196672054 -523378 + B4A SINE B4 2 265 -27 1 2085 1070 286 85 8 chr1 196673137 196673514 -521918 - MamRep1161 DNA TcMar -551 406 1 1 2085 327 253 22 22 chr1 196674751 196674840 -520592 + PB1D10 SINE Alu 27 115 -2 1 2085 6301 94 16 3 chr1 196674983 196676663 -518769 - L1VL2 LINE L1 -1789 1826 126 1 2085 1190 279 53 46 chr1 196676739 196677133 -518299 - MLT2C1 LTR ERVL 0 397 1 1 2085 444 99 0 0 chr1 196678442 196678513 -516919 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 2085 929 219 85 19 chr1 196678669 196678976 -516456 + L1MA5 LINE L1 5971 6297 -3 1 2085 327 177 0 0 chr1 196680520 196680582 -514850 + CT-rich Low_complexity Low_complexity 2 63 0 1 2085 1207 306 76 52 chr1 196680632 196681142 -514290 + Charlie1a DNA MER1_type 224 746 -709 1 2085 195 69 0 0 chr1 196681142 196681171 -514261 + (TTGG)n Simple_repeat Simple_repeat 4 32 0 1 2085 1207 306 76 52 chr1 196681171 196681315 -514117 + Charlie1a DNA MER1_type 747 894 -561 1 2085 234 203 194 45 chr1 196681405 196681472 -513960 + B1F SINE Alu 17 93 -56 1 2085 2980 66 5 10 chr1 196681695 196682091 -513341 - MTA_Mm LTR MaLR 0 396 3 1 2085 736 269 64 11 chr1 196682122 196682310 -513122 - B3 SINE B2 -5 211 14 1 2085 516 130 0 0 chr1 196682322 196682414 -513018 + (CCA)n Simple_repeat Simple_repeat 1 92 0 1 2085 333 118 0 0 chr1 196682412 196682463 -512969 + (CAA)n Simple_repeat Simple_repeat 1 51 0 1 2085 893 237 55 27 chr1 196682537 196682890 -512542 + RMER13A LTR ERVK 341 860 0 1 2085 182 414 34 7 chr1 196682923 196683069 -512363 - L2c LINE L2 -41 3346 3197 1 2085 617 296 35 0 chr1 196683128 196683270 -512162 + RSINE1 SINE B4 2 148 -17 1 2085 349 269 108 59 chr1 196683634 196683820 -511612 + LTR81C LTR ERV1? 767 961 -192 1 2085 319 319 123 12 chr1 196684209 196684371 -511061 + HAL1 LINE L1 1426 1605 -902 2 2085 1168 227 29 4 chr1 196684850 196685093 -510339 + 7SK RNA RNA 1 249 -82 2 2085 476 31 31 0 chr1 196685634 196685699 -509733 + (CAGAGA)n Simple_repeat Simple_repeat 4 70 0 2 2085 738 182 46 18 chr1 196686066 196686237 -509195 - B3 SINE B2 -23 172 3 2 2085 438 36 0 0 chr1 196686269 196686325 -509107 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 2 2085 522 185 0 11 chr1 196686325 196686418 -509014 - B1_Mur2 SINE Alu -11 138 47 2 2085 1001 288 129 21 chr1 196686533 196686906 -508526 - MTD LTR MaLR -2 417 5 2 2085 307 310 20 10 chr1 196686990 196687091 -508341 - L1MC4a LINE L1 -1815 6067 5966 2 2085 1088 258 5 9 chr1 196687110 196687325 -508107 - B4 SINE B4 -63 229 16 2 2085 247 275 0 28 chr1 196687264 196687335 -508097 - ID4_ SINE ID -9 74 6 2 2085 577 239 52 0 chr1 196687415 196687628 -507804 - L1MEf LINE L1 -4111 2089 1866 2 2085 238 296 0 0 chr1 196687759 196687813 -507619 - ORR1E LTR MaLR -305 54 1 2 2085 7797 159 30 25 chr1 196687955 196689404 -506028 - Lx5 LINE L1 -3 7047 5592 2 2085 4914 167 55 6 chr1 196689419 196690279 -505153 + RMER19B LTR ERVK 1 902 0 2 2085 809 111 16 0 chr1 196690281 196690407 -505025 - Lx5 LINE L1 -305 5572 5445 2 2085 2150 100 481 5 chr1 196690401 196690966 -504466 - Lx5 LINE L1 -1326 4551 3718 2 2085 3342 188 72 45 chr1 196691095 196692297 -503135 - Lx5 LINE L1 -4015 1862 583 2 2085 1196 57 0 0 chr1 196692320 196692461 -502971 + B1_Mm SINE Alu 2 142 -5 2 2085 21 36 0 0 chr1 196693094 196693122 -502310 + AT_rich Low_complexity Low_complexity 1 28 0 2 2085 276 231 51 0 chr1 196695680 196695769 -499663 + MIR SINE MIR 184 242 -20 2 2085 1410 24 0 0 chr1 196696089 196696256 -499176 + MURVY-LTR LTR ERV1 1 167 -352 2 2085 4282 37 18 0 chr1 196696290 196696799 -498633 - MURVY-LTR LTR ERV1 -1 518 1 2 2085 1039 104 12 0 chr1 196696824 196696997 -498435 + (GA)n Simple_repeat Simple_repeat 1 175 0 2 2085 300 269 115 0 chr1 196696998 196697076 -498356 - PB1D7 SINE Alu -31 89 3 2 2085 632 268 4 0 chr1 196697076 196697149 -498283 - ID SINE ID -141 83 10 2 2085 239 382 38 57 chr1 196697697 196697908 -497524 + MLT1K LTR MaLR 144 350 -245 2 2085 311 307 59 0 chr1 196697926 196698027 -497405 + MLT1K LTR MaLR 425 531 -64 2 2085 657 166 152 5 chr1 196698410 196698602 -496830 - MTC LTR MaLR -267 154 1 2 2085 297 254 70 85 chr1 196698646 196698775 -496657 - MLT1A1 LTR MaLR -281 127 1 2 2085 800 231 106 51 chr1 196699409 196699646 -495786 - ORR1D1 LTR MaLR 0 374 125 2 2085 328 237 70 85 chr1 196699817 196699946 -495486 + MLT1A1 LTR MaLR 1 127 -281 2 2085 752 187 3 13 chr1 196699932 196700081 -495351 - ORR1D1 LTR MaLR -254 140 3 2 2085 321 279 0 0 chr1 196700224 196700292 -495140 - ID4_ SINE ID 0 83 16 2 2085 287 250 12 0 chr1 196700315 196700395 -495037 + L1MD LINE L1 4111 4191 -1955 2 2085 21 36 0 0 chr1 196700408 196700436 -494996 + AT_rich Low_complexity Low_complexity 1 28 0 2 2085 3368 41 0 0 chr1 196700473 196700887 -494545 - L1Md_F2 LINE L1 -200 6382 5969 2 2085 1500 47 0 0 chr1 196700887 196701078 -494354 + L1Md_F2 LINE L1 6392 6582 0 2 2085 426 303 76 9 chr1 196701602 196701825 -493607 + L1M4 LINE L1 4477 4714 -1432 2 2085 23 101 0 0 chr1 196701852 196701931 -493501 + AT_rich Low_complexity Low_complexity 1 79 0 2 2085 27 0 0 0 chr1 196702056 196702083 -493349 + AT_rich Low_complexity Low_complexity 1 27 0 2 2085 669 221 79 22 chr1 196702083 196702222 -493210 - B1_Mur1 SINE Alu -1 148 2 2 2085 300 290 68 61 chr1 196702286 196702550 -492882 + L1M4 LINE L1 4935 5200 -946 2 2085 541 236 0 0 chr1 196702561 196702671 -492761 + B1_Mur1 SINE Alu 18 127 -22 2 2085 205 105 0 73 chr1 196702676 196702717 -492715 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 2085 319 277 94 16 chr1 196702724 196702915 -492517 + L1M4 LINE L1 5196 5401 -745 2 2085 549 257 12 3 chr1 196702931 196703054 -492378 - B3 SINE B2 -70 125 1 2 2085 250 286 36 0 chr1 196703365 196703445 -491987 - MIR SINE MIR -99 169 85 2 2085 332 344 55 16 chr1 196704656 196704783 -490649 + MIR SINE MIR 16 147 -61 2 2085 192 85 0 78 chr1 196706559 196706610 -488822 + C-rich Low_complexity Low_complexity 2 48 0 2 2085 369 109 0 0 chr1 196707309 196707364 -488068 + (TCC)n Simple_repeat Simple_repeat 3 57 0 2 2085 431 192 0 57 chr1 196708243 196708348 -487084 + L1MC2 LINE L1 6240 6338 -6 2 2085 235 320 107 0 chr1 196708717 196708792 -486640 - B1F2 SINE Alu -64 85 3 2 2085 23 0 0 0 chr1 196708793 196708816 -486616 + AT_rich Low_complexity Low_complexity 1 23 0 2 2085 287 366 0 0 chr1 196708879 196708980 -486452 + MLT1D LTR MaLR 24 124 -381 2 2085 561 312 116 22 chr1 196708985 196709260 -486172 + Lx8 LINE L1 7169 7469 -4 2 2085 611 262 98 30 chr1 196709272 196709609 -485823 + MLT1D LTR MaLR 110 505 0 2 2085 254 250 20 173 chr1 196709952 196710102 -485330 + YREP_Mm Unknown Unknown 169 295 -1517 2 2085 478 269 6 127 chr1 196709969 196710135 -485297 - ID_B1 SINE B4 -9 215 70 2 2085 989 294 49 7 chr1 196710249 196710391 -485041 - L1MA6 LINE L1 -346 5954 5807 2 2085 189 0 0 0 chr1 196710391 196710412 -485020 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 2085 989 294 49 7 chr1 196710412 196710694 -484738 - L1MA6 LINE L1 -494 5806 5514 2 2085 183 330 34 43 chr1 196710783 196710900 -484532 - MIRc SINE MIR -2 266 151 2 2085 398 316 128 31 chr1 196711395 196711612 -483820 + MIRb SINE MIR 22 263 -5 2 2085 1017 140 4 179 chr1 196713244 196713458 -481974 + ORR1B1 LTR MaLR 1 174 -210 2 2085 1104 51 22 17 chr1 196713458 196713637 -481795 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 2085 1017 140 4 179 chr1 196713637 196713657 -481775 + ORR1B1 LTR MaLR 175 194 -190 2 2085 579 103 39 8 chr1 196713658 196713699 -481733 + polypyrimidine Low_complexity Low_complexity 89 131 0 2 2085 1033 61 40 9 chr1 196713699 196713870 -481562 + (TC)n Simple_repeat Simple_repeat 1 180 -190 2 2085 1033 61 40 9 chr1 196713880 196714058 -481374 + (TC)n Simple_repeat Simple_repeat 181 370 0 2 2085 579 103 39 8 chr1 196714058 196714132 -481300 + polypyrimidine Low_complexity Low_complexity 2 78 0 2 2085 1020 168 89 0 chr1 196714137 196714327 -481105 + ORR1B1 LTR MaLR 175 381 -3 2 2085 1487 140 173 69 chr1 196714566 196714716 -480716 - ORR1C2 LTR MaLR -2 382 202 2 2085 558 0 0 0 chr1 196714716 196714778 -480654 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 2085 1487 140 173 69 chr1 196714778 196714973 -480459 - ORR1C2 LTR MaLR -183 201 3 2 2085 526 318 122 43 chr1 196715100 196715495 -479937 + MLT1L LTR MaLR 185 610 0 2 2085 597 349 82 68 chr1 196715670 196716024 -479408 - ORR1E LTR MaLR 0 359 1 2 2085 2840 161 93 67 chr1 196716069 196717176 -478256 + ORR1B1-int LTR MaLR 1 1961 -2 2 2085 215 250 133 0 chr1 196718809 196718869 -476563 + B1F SINE Alu 3 70 -79 2 2085 811 243 183 16 chr1 196719211 196719457 -475975 + B4 SINE B4 1 287 -5 2 2085 369 0 0 0 chr1 196719462 196719503 -475929 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 2085 872 330 54 73 chr1 196719512 196719576 -475856 + MLT1E3 LTR MaLR 150 211 -413 2 2085 1523 97 9 4 chr1 196719576 196719803 -475629 + L1_Mus3 LINE L1 6411 6638 0 2 2085 872 330 54 73 chr1 196719803 196720219 -475213 + MLT1E3 LTR MaLR 212 621 -3 2 2085 376 273 36 18 chr1 196720405 196720517 -474915 + PB1D10 SINE Alu 2 115 -2 2 2085 27 49 0 0 chr1 196720599 196720640 -474792 + AT_rich Low_complexity Low_complexity 1 41 0 2 2085 760 281 25 0 chr1 196720717 196720916 -474516 + Lx5 LINE L1 6754 6957 -93 2 2085 186 43 0 0 chr1 196721065 196721088 -474344 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 2085 279 0 0 0 chr1 196721414 196721445 -473987 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2 2085 182 188 281 0 chr1 196722041 196722105 -473327 + MIRm SINE MIR 73 154 -122 2 2085 350 261 132 16 chr1 196722076 196722197 -473235 + MIRb SINE MIR 126 260 -8 2 2085 347 0 0 23 chr1 196722422 196722466 -472966 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 2085 939 248 112 35 chr1 196722466 196722619 -472813 + L1MB4 LINE L1 5621 5794 -386 2 2085 252 86 0 0 chr1 196722619 196722654 -472778 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 2085 939 248 112 35 chr1 196722654 196722955 -472477 + L1MB4 LINE L1 5795 6109 -71 2 2085 246 317 115 0 chr1 196723051 196723162 -472270 + MIRb SINE MIR 29 157 -111 2 2085 198 91 0 0 chr1 196724068 196724101 -471331 + (TGG)n Simple_repeat Simple_repeat 1 33 0 2 2085 342 0 0 0 chr1 196724102 196724140 -471292 + (TTG)n Simple_repeat Simple_repeat 1 38 0 2 2085 1206 89 0 0 chr1 196724140 196724309 -471123 + (TTCTCC)n Simple_repeat Simple_repeat 6 174 0 2 2085 200 86 29 0 chr1 196724311 196724346 -471086 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2 2085 815 193 35 0 chr1 196724361 196724506 -470926 - B1_Mur4 SINE Alu 0 150 1 2 2085 793 299 82 7 chr1 196724665 196724935 -470497 + B4 SINE B4 2 291 -1 2 2085 276 258 96 29 chr1 196725073 196725209 -470223 + L1M3 LINE L1 5414 5558 -733 2 2085 249 256 193 15 chr1 196725208 196725262 -470170 + L1P5 LINE L1 5714 5780 -376 2 2085 501 47 0 0 chr1 196725262 196725326 -470106 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 2085 249 256 193 15 chr1 196725326 196725406 -470026 + L1P5 LINE L1 5781 5871 -285 2 2085 793 196 65 0 chr1 196725743 196725881 -469551 + B1_Mur4 SINE Alu 1 147 -3 2 2085 29 28 0 0 chr1 196725894 196725930 -469502 + AT_rich Low_complexity Low_complexity 1 36 0 2 2085 396 0 0 0 chr1 196725968 196726012 -469420 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 2085 454 264 0 0 chr1 196726258 196726368 -469064 - PB1D10 SINE Alu -7 110 1 2 2085 291 304 0 0 chr1 196726642 196726711 -468721 + MIR SINE MIR 105 173 -89 2 2085 230 296 70 0 chr1 196728143 196728214 -467218 - PB1D9 SINE Alu -8 112 37 2 2085 784 189 24 0 chr1 196729022 196729186 -466246 + Lx9 LINE L1 7298 7465 -179 2 2085 252 0 0 0 chr1 196729189 196729217 -466215 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 2085 232 235 20 0 chr1 196729426 196729477 -465955 + Charlie5 DNA MER1_type 13 64 -2560 2 2085 271 371 8 17 chr1 196729524 196729642 -465790 + PB1D10 SINE Alu 1 117 0 2 2085 527 269 146 43 chr1 196729769 196729866 -465566 + Charlie5 DNA MER1_type 248 354 -2270 2 2085 5212 84 26 1 chr1 196729866 196730582 -464850 - L1Md_F2 LINE L1 -7 6575 5842 2 2085 527 269 146 43 chr1 196730582 196730764 -464668 + Charlie5 DNA MER1_type 355 556 -2068 2 2085 587 341 32 80 chr1 196730808 196731057 -464375 + B4 SINE B4 38 274 -18 2 2085 496 285 72 60 chr1 196731075 196731340 -464092 + Charlie5 DNA MER1_type 571 838 -1786 2 2085 585 253 118 0 chr1 196731361 196731547 -463885 - B3 SINE B2 -8 208 1 2 2085 14043 105 12 6 chr1 196731581 196734641 -460791 + L1_Mus3 LINE L1 3536 6615 -23 3 2085 2147 273 104 80 chr1 196734641 196735847 -459585 + Charlie5 DNA MER1_type 822 2039 -585 2 2085 333 0 0 0 chr1 196735847 196735884 -459548 + (CAAT)n Simple_repeat Simple_repeat 1 37 0 3 2085 2147 273 104 80 chr1 196735884 196735984 -459448 + Charlie5 DNA MER1_type 2040 2159 -465 2 2085 623 266 24 21 chr1 196736000 196736163 -459269 + ID_B1 SINE B4 78 248 -44 3 2085 306 106 0 0 chr1 196736234 196736281 -459151 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 2085 354 194 136 48 chr1 196736353 196736456 -458976 + B3A SINE B2 4 115 -83 3 2085 428 216 61 6 chr1 196736537 196736700 -458732 + Charlie5 DNA MER1_type 2414 2585 -39 2 2085 288 306 66 66 chr1 196736721 196736934 -458498 + Lx8 LINE L1 7243 7455 -18 3 260 18634 55 1 3 chr1 196738176 196741371 -454061 - L1Md_F2 LINE L1 -16 6566 3378 3 2086 14560 58 0 1 chr1 196741370 196743298 -452134 + L1Md_F2 LINE L1 3659 5585 -298 3 2086 7959 55 2 0 chr1 196743299 196744291 -451141 + L1Md_F2 LINE L1 5587 6580 -2 3 2086 2198 81 52 61 chr1 196744330 196744660 -450772 - ORR1A2 LTR MaLR 0 327 1 3 2086 244 219 0 15 chr1 196744945 196745010 -450422 + L1MEg LINE L1 1039 1102 -4982 3 2086 694 277 41 18 chr1 196745207 196745376 -450056 + B4A SINE B4 112 284 -8 3 2086 219 69 0 0 chr1 196745462 196745491 -449941 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 2086 21 0 0 0 chr1 196745648 196745669 -449763 + AT_rich Low_complexity Low_complexity 1 21 0 3 2086 292 191 123 9 chr1 196745670 196745776 -449656 - Lx2B LINE L1 -1 7643 7526 3 2086 8533 159 19 4 chr1 196745761 196748304 -447128 - Lx2B LINE L1 -130 6870 4398 3 2086 3385 208 46 93 chr1 196748359 196748872 -446560 - RMER17B LTR ERVK -88 820 372 3 2086 405 0 0 0 chr1 196748872 196748917 -446515 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 2086 3385 187 45 68 chr1 196748917 196749348 -446084 - RMER17B LTR ERVK -529 429 2 3 2086 36 0 0 0 chr1 196749351 196749387 -446045 + AT_rich Low_complexity Low_complexity 1 36 0 3 2086 209 180 0 20 chr1 196749497 196749548 -445884 + GA-rich Low_complexity Low_complexity 4 53 0 3 2086 1138 262 70 42 chr1 196750605 196750799 -444633 + MTEa LTR MaLR 1 194 -185 3 2086 540 0 0 0 chr1 196750799 196750859 -444573 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 2086 1138 262 70 42 chr1 196750859 196751019 -444413 + MTEa LTR MaLR 195 364 -15 3 2086 262 359 88 32 chr1 196751279 196751495 -443937 - MLT1G1 LTR MaLR 0 579 352 3 2086 473 252 26 18 chr1 196751586 196751699 -443733 + MER5A1 DNA MER1_type 1 114 -52 3 2086 219 350 115 34 chr1 196751724 196751872 -443560 - MIR SINE MIR -60 202 43 3 2086 198 0 0 0 chr1 196752747 196752769 -442663 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 2086 4534 162 81 22 chr1 196752772 196753691 -441741 + Lx5 LINE L1 6078 7050 0 3 2086 311 366 24 35 chr1 196755182 196755352 -440080 - L2 LINE L2 -480 2939 2772 3 2086 7237 91 8 11 chr1 196757668 196758986 -436446 - L1_Mus4 LINE L1 -9 6627 5309 3 2086 3208 124 0 0 chr1 196758989 196759503 -435929 + L1_Mur2 LINE L1 3573 4086 -1791 3 2086 1414 168 184 0 chr1 196760032 196760348 -435084 + ORR1D1 LTR MaLR 1 374 0 3 2086 254 156 65 0 chr1 196760766 196760843 -434589 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 2086 367 318 9 18 chr1 196761234 196761343 -434089 + PB1D10 SINE Alu 9 116 -1 3 2086 345 310 0 11 chr1 196762554 196762642 -432790 - ID_B1 SINE B4 -9 215 129 3 2086 234 211 158 0 chr1 196762648 196762705 -432727 + MLT1A1 LTR MaLR 343 408 0 3 2086 430 309 6 17 chr1 196763552 196763668 -431764 + PB1D7 SINE Alu 1 122 -5 3 2086 304 392 74 15 chr1 196769112 196769314 -426118 - MER58C DNA MER1_type -1 214 1 3 2086 633 241 60 8 chr1 196769417 196769551 -425881 + RSINE1 SINE B4 3 143 -22 3 2086 25 31 0 0 chr1 196769622 196769654 -425778 + AT_rich Low_complexity Low_complexity 1 32 0 3 2086 397 273 4 41 chr1 196770264 196770420 -425012 + ID_B1 SINE B4 81 224 0 3 2086 22 56 0 0 chr1 196770569 196770605 -424827 + AT_rich Low_complexity Low_complexity 1 36 0 3 2086 267 370 80 38 chr1 196772568 196772807 -422625 - MER115 DNA Tip100 -40 653 405 3 2086 558 414 85 14 chr1 196772844 196773126 -422306 - MER115 DNA Tip100 -242 451 150 3 2086 4809 58 0 33 chr1 196774289 196774925 -420507 - L1_Mus2 LINE L1 0 6566 5952 3 2086 234 221 53 105 chr1 196776880 196776956 -418476 + B1F SINE Alu 49 120 -29 3 2086 331 263 53 0 chr1 196777836 196777912 -417520 - ID4 SINE ID 0 83 4 3 2086 312 327 59 45 chr1 196777978 196778199 -417233 - L1MD LINE L1 -1808 4338 4115 3 2086 726 34 0 0 chr1 196778716 196778805 -416627 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 2086 1459 148 5 0 chr1 196779386 196779609 -415823 + URR1B DNA MER1_type 1 224 -1 3 2086 311 211 78 0 chr1 196780269 196780349 -415083 - L1MB3 LINE L1 -181 5999 5909 3 2086 900 270 26 167 chr1 196780367 196780936 -414496 - L1MB3 LINE L1 -368 5815 5327 3 2086 1427 199 201 31 chr1 196781417 196781775 -413657 - MTD LTR MaLR 0 419 1 3 2086 218 249 5 62 chr1 196782942 196783084 -412348 + MIR SINE MIR 110 236 -26 3 2086 225 65 65 0 chr1 196784066 196784112 -411320 - L1Md_F2 LINE L1 -2 6580 6532 3 2086 224 59 29 0 chr1 196784566 196784600 -410832 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 3 2086 190 261 101 0 chr1 196789254 196789323 -406109 - L2a LINE L2 0 3426 3351 3 2086 249 297 0 0 chr1 196789479 196789543 -405889 - Tigger7 DNA MER2_type -2193 298 235 3 2086 619 258 147 23 chr1 196789622 196789840 -405592 + MTD LTR MaLR 175 419 0 3 2086 254 252 149 52 chr1 196790297 196790431 -405001 + MIRb SINE MIR 37 183 -85 3 2086 665 300 5 27 chr1 196790542 196790752 -404680 + B3A SINE B2 1 207 -9 3 2086 452 174 0 11 chr1 196791073 196791166 -404266 + GA-rich Low_complexity Low_complexity 1 92 0 3 2086 193 346 13 0 chr1 196791574 196791652 -403780 - MIRb SINE MIR -18 250 172 3 2086 2044 155 126 22 chr1 196791716 196792170 -403262 - RMER4B LTR ERVK -84 501 1 3 2086 2209 170 46 21 chr1 196792804 196792891 -402541 - RLTR20B3 LTR ERVK -9 568 483 3 2086 285 29 0 0 chr1 196792891 196792925 -402507 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 2086 2209 170 46 21 chr1 196792925 196793312 -402120 - RLTR20B3 LTR ERVK -95 482 83 3 2086 180 0 0 0 chr1 196793346 196793366 -402066 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 2086 252 0 0 0 chr1 196793366 196793393 -402039 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 2086 470 246 183 54 chr1 196793581 196793822 -401610 - RLTR10A LTR ERVK 0 411 140 3 2086 2346 300 52 45 chr1 196793863 196796345 -399087 - IAP-d-int LTR ERVK -1462 5080 1002 3 2086 356 275 47 53 chr1 196796396 196796546 -398886 - IAP-d-int LTR ERVK -4153 2389 2241 3 2086 551 194 39 46 chr1 196796778 196796908 -398524 - RLTR10-int LTR ERVK -1594 393 265 3 2086 395 257 18 73 chr1 196796963 196797127 -398305 - RLTR10A LTR ERVK -117 294 140 3 2086 1037 141 0 6 chr1 196797179 196797358 -398074 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 2086 285 167 0 0 chr1 196797358 196797412 -398020 + CT-rich Low_complexity Low_complexity 3 56 0 3 2086 323 340 0 0 chr1 196797489 196797586 -397846 + PB1D10 SINE Alu 5 101 -16 3 2086 249 349 82 9 chr1 196797586 196797599 -397833 + ID_B1 SINE B4 86 203 -21 3 2086 316 289 11 11 chr1 196797903 196797994 -397438 - MIRb SINE MIR -67 201 111 3 2086 200 317 124 52 chr1 196798340 196798533 -396899 + MIRc SINE MIR 3 209 -59 3 2086 442 274 9 0 chr1 196798709 196798815 -396617 + PB1D10 SINE Alu 11 117 0 3 2086 234 0 0 0 chr1 196798837 196798863 -396569 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 2086 1471 75 0 0 chr1 196798875 196799063 -396369 + L1_Mus1 LINE L1 6377 6564 -3 3 2086 2122 146 11 14 chr1 196799533 196799893 -395539 - ORR1B2 LTR MaLR -8 359 1 3 2086 401 330 18 92 chr1 196799977 196800194 -395238 - MLT1A0 LTR MaLR -21 353 153 3 2086 472 311 27 7 chr1 196800306 196800455 -394977 - MLT1A0 LTR MaLR -213 152 1 3 2086 288 236 63 106 chr1 196800630 196800772 -394660 + RMER15 LTR ERVL 13 148 -427 3 2086 433 273 160 27 chr1 196800792 196800980 -394452 + RMER15 LTR ERVL 300 512 -63 3 2086 1100 57 35 0 chr1 196801458 196801599 -393833 - B1_Mus2 SINE Alu -1 146 1 3 2086 391 205 146 8 chr1 196801761 196801884 -393548 - B4A SINE B4 -44 248 109 3 2086 342 0 0 0 chr1 196801891 196801929 -393503 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 2086 240 242 0 57 chr1 196802106 196802176 -393256 + Charlie4z DNA MER1_type 73 138 -29 3 2086 192 158 0 0 chr1 196804664 196804702 -390730 + G-rich Low_complexity Low_complexity 1 38 0 3 2086 1216 181 4 18 chr1 196805625 196805850 -389582 + URR1B DNA MER1_type 1 222 -3 3 2086 291 233 51 127 chr1 196806307 196806422 -389010 + MER58B DNA MER1_type 228 333 -8 3 2086 569 239 0 0 chr1 196806422 196806552 -388880 + B1_Mur4 SINE Alu 1 130 -20 3 2086 323 291 274 0 chr1 196809008 196809125 -386307 - B1F2 SINE Alu 0 149 1 3 2086 187 309 53 11 chr1 196809134 196809229 -386203 - L2a LINE L2 -24 3402 3304 3 2086 180 0 0 0 chr1 196810046 196810066 -385366 + (T)n Simple_repeat Simple_repeat 1 20 0 3 2086 1275 40 0 0 chr1 196810066 196810214 -385218 - B1_Mus1 SINE Alu 0 148 1 3 2086 345 370 111 9 chr1 196811016 196811360 -384072 + L2a LINE L2 2330 2708 -711 3 2086 199 282 66 28 chr1 196811390 196811496 -383936 + L2a LINE L2 2783 2892 -527 3 2086 341 347 131 14 chr1 196811856 196812062 -383370 + L2a LINE L2 3024 3268 -158 3 2086 1951 160 40 83 chr1 196812062 196812457 -382975 + ORR1C1 LTR MaLR 1 378 0 3 2086 341 347 131 14 chr1 196812457 196812609 -382823 + L2a LINE L2 3269 3424 -2 3 2086 892 250 70 18 chr1 196812863 196812943 -382489 - L1MA6 LINE L1 -422 5878 5782 3 2086 787 97 32 0 chr1 196812943 196813097 -382335 + (CA)n Simple_repeat Simple_repeat 1 159 0 3 2086 892 250 70 18 chr1 196813097 196813289 -382143 - L1MA6 LINE L1 -519 5781 5593 3 2086 446 235 0 10 chr1 196813295 196813398 -382034 - PB1D10 SINE Alu -1 116 15 3 2086 309 281 0 50 chr1 196813317 196813418 -382014 - ID_B1 SINE B4 -49 175 80 3 2086 893 238 106 21 chr1 196813421 196813542 -381890 - L1MA6 LINE L1 -689 5611 5492 3 2086 404 118 0 14 chr1 196813542 196813611 -381821 + (CTA)n Simple_repeat Simple_repeat 1 68 0 3 2086 893 220 132 9 chr1 196813611 196813902 -381530 - L1MA6 LINE L1 -809 5491 5160 3 2086 357 24 0 0 chr1 196813960 196814002 -381430 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 2086 4303 53 6 4 chr1 196814705 196815236 -380196 + L1Md_F2 LINE L1 6051 6582 0 3 2086 771 182 0 14 chr1 196815625 196815764 -379668 - B1_Mm SINE Alu 0 147 11 3 2086 203 56 56 0 chr1 196817004 196817040 -378392 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 2086 220 349 45 19 chr1 196818145 196818300 -377132 - MIR SINE MIR -8 254 96 4 2086 471 141 0 0 chr1 196819461 196819539 -375893 + (T)n Simple_repeat Simple_repeat 1 78 0 4 2086 180 0 0 0 chr1 196822127 196822147 -373285 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 2086 207 0 0 0 chr1 196822315 196822338 -373094 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 2086 426 223 67 13 chr1 196822435 196822585 -372847 - L1ME3A LINE L1 -179 5994 5837 4 2086 474 254 207 9 chr1 196822779 196823011 -372421 - L1ME3A LINE L1 -441 5721 5452 4 2086 416 18 36 0 chr1 196823123 196823179 -372253 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 4 2086 709 291 45 66 chr1 196823424 196823847 -371585 - BGLII_B LTR ERVK -27 414 1 4 2086 258 191 0 0 chr1 196824155 196824202 -371230 + RMER21A LTR ERV1 638 684 -263 4 2086 205 320 90 0 chr1 196827386 196827486 -367946 - L2a LINE L2 -7 3419 3311 4 2086 1538 265 44 29 chr1 196828149 196828290 -367142 - L1MA6 LINE L1 0 6300 6161 4 2086 1489 191 147 14 chr1 196828290 196828636 -366796 - ORR1B1 LTR MaLR 0 394 3 4 2086 1538 265 44 29 chr1 196828636 196829109 -366323 - L1MA6 LINE L1 -140 6160 5678 4 2086 224 290 114 53 chr1 196829116 196829247 -366185 + MIRb SINE MIR 90 228 -40 4 2086 296 361 8 62 chr1 196830490 196830620 -364812 - MIRb SINE MIR -14 254 132 4 2086 378 42 0 0 chr1 196830990 196831038 -364394 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 2086 380 221 0 0 chr1 196833217 196833285 -362147 - ID4_ SINE ID 0 83 16 4 2086 7465 48 10 0 chr1 196834671 196835571 -359861 - L1Md_F2 LINE L1 -12 6570 5662 4 2086 2069 57 0 0 chr1 196835570 196835815 -359617 + L1Md_F2 LINE L1 5401 5645 -238 4 2086 228 67 0 0 chr1 196836357 196836387 -359045 + (T)n Simple_repeat Simple_repeat 1 30 0 4 2086 279 152 49 33 chr1 196837284 196837345 -358087 + AmnSINE1 SINE SINE 59 120 -455 4 2086 369 315 30 38 chr1 196837749 196837881 -357551 - MIRb SINE MIR -111 157 27 4 2086 432 55 0 0 chr1 196838119 196838174 -357258 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 2086 380 260 0 0 chr1 196838176 196838249 -357183 - ID4_ SINE ID -10 73 1 4 2086 428 262 98 55 chr1 196838564 196838818 -356614 + L1M5 LINE L1 5009 5273 -873 4 2086 240 35 0 0 chr1 196839788 196839817 -355615 + (T)n Simple_repeat Simple_repeat 1 29 0 4 2086 225 0 0 0 chr1 196840049 196840074 -355358 + (A)n Simple_repeat Simple_repeat 1 25 0 4 2086 25 31 0 0 chr1 196841987 196842019 -353413 + AT_rich Low_complexity Low_complexity 1 32 0 4 2086 189 171 0 0 chr1 196842978 196843013 -352419 + A-rich Low_complexity Low_complexity 1 35 0 4 2086 915 99 35 0 chr1 196843180 196843352 -352080 + (GA)n Simple_repeat Simple_repeat 2 179 0 4 2086 22 35 0 0 chr1 196843841 196843870 -351562 + AT_rich Low_complexity Low_complexity 1 29 0 4 2086 719 54 54 0 chr1 196846295 196846425 -349007 + (TC)n Simple_repeat Simple_repeat 2 138 0 4 2086 297 68 0 0 chr1 196847032 196847076 -348356 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 4 2086 702 0 0 0 chr1 196848048 196848126 -347306 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 2086 225 0 0 0 chr1 196848132 196848157 -347275 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 2086 198 371 55 22 chr1 196853093 196853184 -342248 - MIRm SINE MIR -162 114 21 4 2086 447 227 20 30 chr1 196853509 196853609 -341823 + PB1D10 SINE Alu 10 108 -9 4 2086 2999 80 13 0 chr1 196855902 196856288 -339144 + L1_Mus3 LINE L1 6246 6636 -2 4 2086 975 90 13 13 chr1 196856301 196856459 -338973 + (GGAAA)n Simple_repeat Simple_repeat 4 161 0 4 2086 540 344 51 7 chr1 196857561 196857836 -337596 - MER2 DNA MER2_type -57 288 2 4 2086 192 219 12 24 chr1 196858637 196858721 -336711 + CT-rich Low_complexity Low_complexity 2 84 0 4 2086 223 200 0 0 chr1 196865802 196865842 -329590 - MER5B DNA MER1_type -137 41 2 4 2086 480 347 101 7 chr1 196865906 196866182 -329250 - MLT1D LTR MaLR 0 505 204 4 2086 376 238 38 0 chr1 196867330 196867410 -328022 - BC1_Mm scRNA scRNA -68 84 2 4 2086 30 69 0 0 chr1 196868404 196868462 -326970 + AT_rich Low_complexity Low_complexity 1 58 0 4 2086 1271 68 0 0 chr1 196869432 196869579 -325853 - B1_Mm SINE Alu 0 147 1 4 2086 620 160 85 0 chr1 196869654 196869760 -325672 - B1_Mur2 SINE Alu -20 129 15 4 2087 660 257 27 71 chr1 196870440 196870624 -324808 - B4 SINE B4 -115 177 2 4 2087 524 306 61 0 chr1 196870928 196871075 -324357 + MER21B LTR ERV1 1 156 -707 4 2087 505 226 352 16 chr1 196871298 196871545 -323887 + MER21B LTR ERV1 509 838 -25 4 2087 1413 102 16 0 chr1 196871637 196871823 -323609 + B2_Mm2 SINE B2 2 190 -5 4 2087 727 262 82 5 chr1 196871926 196872110 -323322 + B3 SINE B2 1 198 -18 4 2087 519 17 0 0 chr1 196872110 196872170 -323262 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 2087 873 200 14 0 chr1 196872174 196872319 -323113 + B1_Mur2 SINE Alu 2 148 -1 4 2087 233 265 14 56 chr1 196872606 196872678 -322754 + B1F1 SINE Alu 36 104 -16 4 2087 1634 179 76 174 chr1 196873723 196874210 -321222 + RMER4B LTR ERVK 17 455 -11 4 2087 22 0 0 0 chr1 196874284 196874306 -321126 + AT_rich Low_complexity Low_complexity 1 22 0 4 2087 7576 66 3 4 chr1 196874604 196875902 -319530 - L1Md_F2 LINE L1 0 6582 5288 4 2087 42204 6 0 1 chr1 196875908 196882890 -312542 - L1Md_A LINE L1 0 6582 1 4 2087 31526 67 3 1 chr1 196882882 196884700 -310732 - L1Md_F2 LINE L1 -579 5304 3487 4 2087 216 0 0 0 chr1 196884700 196884724 -310708 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 2087 31526 62 3 2 chr1 196884724 196887700 -307732 - L1Md_F2 LINE L1 -2397 3486 504 4 2087 251 161 0 90 chr1 196887882 196887971 -307461 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 4 2087 22 56 0 0 chr1 196888108 196888144 -307288 + AT_rich Low_complexity Low_complexity 1 36 0 4 2087 216 86 0 0 chr1 196888651 196888686 -306746 + (T)n Simple_repeat Simple_repeat 1 35 0 4 2087 208 173 0 19 chr1 196888687 196888740 -306692 + (TTG)n Simple_repeat Simple_repeat 1 52 0 4 2087 1007 76 0 110 chr1 196888740 196888903 -306529 - B1_Mus2 SINE Alu 0 147 3 4 2087 3972 123 97 2 chr1 196889118 196889737 -305695 + RLTR33 LTR ERVK 1 678 0 4 2087 4592 93 5 1 chr1 196890054 196890702 -304730 + Lx2 LINE L1 6347 6996 -1 4 2087 216 306 0 0 chr1 196891391 196891440 -303992 + ID4 SINE ID 2 50 -33 4 2087 403 226 86 177 chr1 196891509 196891719 -303713 - MTD LTR MaLR -14 405 226 4 2087 297 0 0 0 chr1 196891743 196891776 -303656 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 4 2087 483 282 39 78 chr1 196891816 196891970 -303462 - B1_Mur1 SINE Alu -1 148 1 4 2087 6222 57 11 1 chr1 196892001 196892835 -302597 - L1_Mus2 LINE L1 0 6566 5725 4 2087 603 338 10 19 chr1 196892835 196893043 -302389 - MTD LTR MaLR -209 210 5 4 2087 321 355 96 6 chr1 196893278 196893445 -301987 + Tigger5 DNA MER2_type 3 184 -2222 4 2087 292 261 45 11 chr1 196893500 196893589 -301843 + Tigger5 DNA MER2_type 2315 2406 0 4 2087 1298 96 17 0 chr1 196893636 196893813 -301619 + B2_Mm2 SINE B2 2 181 -14 4 2087 639 271 44 4 chr1 196894690 196894942 -300490 + L1MB4 LINE L1 3959 4220 -1920 4 2087 244 148 184 0 chr1 196895048 196895151 -300281 + L1MB4 LINE L1 4259 4390 -1750 4 2087 5024 150 3 13 chr1 196895156 196895659 -299773 + Lx LINE L1 4997 5499 -384 4 2087 2392 133 49 23 chr1 196895659 196896050 -299382 + RLTR44A LTR ERVK 5 405 0 4 2087 6486 108 35 15 chr1 196896050 196897187 -298245 + Lx LINE L1 5500 6653 -1 4 2087 1259 69 11 0 chr1 196897218 196897392 -298040 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 4 2087 241 392 0 0 chr1 196897392 196897446 -297986 + G-rich Low_complexity Low_complexity 1 54 0 4 2087 243 0 0 0 chr1 196897446 196897473 -297959 + (GGGAA)n Simple_repeat Simple_repeat 4 30 0 4 2087 241 392 0 0 chr1 196897473 196897497 -297935 + G-rich Low_complexity Low_complexity 55 78 0 4 2087 1487 253 76 15 chr1 196898041 196898900 -296532 + L1MB4 LINE L1 4532 5472 -708 4 2087 4616 132 22 5 chr1 196898957 196899400 -296032 + Lx LINE L1 5887 6338 -316 4 2087 221 57 29 0 chr1 196899400 196899435 -295997 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 2087 4616 132 22 5 chr1 196899435 196899746 -295686 + Lx LINE L1 6339 6653 -1 4 2087 491 275 52 19 chr1 196899753 196899964 -295468 + L1MB4 LINE L1 5833 6050 -130 4 2087 27 49 0 0 chr1 196900020 196900061 -295371 + AT_rich Low_complexity Low_complexity 1 41 0 4 2087 477 283 51 82 chr1 196900376 196900412 -295020 - B2_Mm2 SINE B2 -5 190 157 4 2087 438 114 0 0 chr1 196900412 196900482 -294950 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 2087 756 278 39 2 chr1 196900482 196900641 -294791 - B3A SINE B2 -37 161 1 4 2087 428 312 0 23 chr1 196901013 196901141 -294291 + B4A SINE B4 168 292 0 4 2087 203 0 37 0 chr1 196901171 196901198 -294234 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 2087 38 39 0 0 chr1 196901420 196901472 -293960 + AT_rich Low_complexity Low_complexity 1 52 0 4 2087 21 0 0 0 chr1 196901597 196901618 -293814 + AT_rich Low_complexity Low_complexity 1 21 0 4 2087 21 36 0 0 chr1 196901986 196902014 -293418 + AT_rich Low_complexity Low_complexity 1 28 0 4 2087 4747 52 41 3 chr1 196902015 196902628 -292804 + L1_Mus1 LINE L1 5932 6567 0 4 2087 1314 103 11 0 chr1 196903418 196903603 -291829 - B2_Mm1t SINE B2 -6 187 1 4 2087 314 229 97 44 chr1 196904389 196904503 -290929 - L1MEc LINE L1 -4611 1804 1685 4 2087 1245 24 0 0 chr1 196904625 196904792 -290640 + MTA_Mm-int LTR MaLR 932 1098 0 4 2087 3365 28 5 5 chr1 196904792 196905188 -290244 + MTA_Mm LTR MaLR 1 396 0 4 2087 198 0 0 0 chr1 196905328 196905350 -290082 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 2087 1030 79 0 7 chr1 196905353 196905493 -289939 - B1_Mus1 SINE Alu -1 147 9 4 2087 462 230 22 93 chr1 196905398 196905537 -289895 - MT2B LTR ERVL -344 257 129 4 2087 324 328 109 16 chr1 196905545 196905728 -289704 - L1MEc LINE L1 -5114 1286 1087 4 2087 329 351 137 19 chr1 196905766 196906239 -289193 - L1ME1 LINE L1 -3 6176 5648 4 2087 607 248 183 45 chr1 196906262 196906574 -288858 + ORR1E LTR MaLR 5 359 0 4 2087 234 308 18 36 chr1 196906614 196906725 -288707 - L1ME1 LINE L1 -584 5595 5487 4 2087 477 0 0 0 chr1 196906726 196906779 -288653 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 2087 457 283 82 20 chr1 196906813 196907058 -288374 - L1MD LINE L1 -1969 4177 3918 4 2087 357 260 153 47 chr1 196907145 196907335 -288097 - L1MD LINE L1 -2282 3864 3655 4 2087 558 300 76 63 chr1 196907335 196908049 -287383 - L1ME1 LINE L1 -2639 3507 2785 4 2087 554 241 9 0 chr1 196908097 196908213 -287219 + PB1D9 SINE Alu 4 120 0 4 2087 232 180 48 32 chr1 196908413 196908476 -286956 - L1ME1 LINE L1 -6007 235 172 4 2087 471 226 294 4 chr1 196909471 196909706 -285726 + Charlie1a DNA MER1_type 1148 1450 -5 4 2087 258 317 47 28 chr1 196910113 196910220 -285212 + MIR3 SINE MIR 7 115 -93 5 2087 367 316 5 65 chr1 196910220 196910248 -285184 + B4 SINE B4 60 177 -115 5 2087 597 240 74 0 chr1 196910248 196910369 -285063 + B1_Mur1 SINE Alu 1 130 -19 5 2087 217 0 29 29 chr1 196910376 196910410 -285022 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 2087 593 271 0 0 chr1 196911151 196911269 -284163 - B1F SINE Alu -29 120 3 5 2087 913 223 190 19 chr1 196911751 196912067 -283365 + ORR1D2 LTR MaLR 1 370 0 5 2087 4400 77 5 10 chr1 196912527 196913153 -282279 - L1_Mus3 LINE L1 -12 6626 6004 5 2087 1329 63 0 0 chr1 196913151 196913326 -282106 + L1_Mus4 LINE L1 5621 5795 -841 5 2087 238 125 140 18 chr1 196913338 196913395 -282037 + L1_Mus4 LINE L1 5956 6019 -617 5 2087 3449 158 40 5 chr1 196913367 196914413 -281019 - L1_Mus3 LINE L1 -633 6005 5333 5 2087 289 203 22 66 chr1 196914837 196914900 -280532 + RMER17D2 LTR ERVK 248 304 -505 5 2087 995 17 11 63 chr1 196914900 196915089 -280343 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 5 2087 289 203 22 66 chr1 196915089 196915162 -280270 + RMER17D2 LTR ERVK 305 377 -432 5 2087 971 48 0 0 chr1 196916022 196916146 -279286 + B1_Mus2 SINE Alu 24 147 0 5 2087 363 23 0 0 chr1 196916218 196916262 -279170 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 2087 1121 82 0 13 chr1 196916262 196916400 -279032 - B1_Mm SINE Alu -9 138 1 5 2087 182 327 77 60 chr1 196916808 196916925 -278507 - L2a LINE L2 -259 3167 3049 5 2087 206 118 0 0 chr1 196916925 196916959 -278473 + (A)n Simple_repeat Simple_repeat 1 34 0 5 2087 1009 82 82 0 chr1 196917789 196917924 -277508 - B1_Mm SINE Alu 0 147 2 5 2087 2216 146 65 0 chr1 196919598 196919967 -275465 + ORR1B1 LTR MaLR 1 393 -1 5 2087 206 178 22 0 chr1 196920043 196920088 -275344 + A-rich Low_complexity Low_complexity 4 49 0 5 2087 696 272 107 71 chr1 196920219 196920285 -275147 - B4A SINE B4 0 292 234 5 2087 1994 152 73 6 chr1 196920285 196920629 -274803 - ORR1B2 LTR MaLR 0 367 1 5 2087 696 272 107 71 chr1 196920629 196920815 -274617 - B4A SINE B4 -59 233 31 5 2087 2276 184 22 14 chr1 196920994 196921408 -274024 - MTC LTR MaLR 0 421 5 5 2087 1514 43 0 0 chr1 196921697 196921884 -273548 + Lx3_Mus LINE L1 6667 6853 -156 5 2087 3403 13 2 5 chr1 196921885 196922281 -273151 + L1Md_A LINE L1 6188 6582 0 5 2087 854 103 58 0 chr1 196922283 196922438 -272994 + Lx3_Mus LINE L1 6838 7001 -8 5 2087 906 210 78 29 chr1 196922457 196922663 -272769 - B3 SINE B2 0 216 1 5 2087 1879 136 29 0 chr1 196922715 196923024 -272408 - ORR1A3 LTR MaLR -8 318 1 5 2087 10077 129 95 22 chr1 196923024 196924853 -270579 - ORR1A3-int LTR MaLR 0 1963 1 5 2087 2261 106 0 58 chr1 196924853 196925195 -270237 - ORR1A3 LTR MaLR 0 326 5 5 2087 330 356 169 6 chr1 196925195 196925373 -270059 - B4A SINE B4 -82 210 4 5 2087 4563 58 3 0 chr1 196925418 196925982 -269450 + L1Md_T LINE L1 6017 6582 0 5 2087 200 86 29 0 chr1 196926704 196926739 -268693 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 2087 385 216 47 38 chr1 196927377 196927483 -267949 + RLTR23 LTR ERV1 324 430 0 5 2087 7816 79 3 2 chr1 196927596 196929070 -266362 + L1_Mus3 LINE L1 5161 6636 -2 5 2087 423 118 35 0 chr1 196929422 196929507 -265925 + CT-rich Low_complexity Low_complexity 1 88 0 5 2087 302 263 0 84 chr1 196929725 196929808 -265624 - PB1 SINE Alu -51 76 1 5 2087 250 324 92 9 chr1 196929875 196929984 -265448 - PB1D7 SINE Alu 0 120 3 5 2087 23 86 0 0 chr1 196930411 196930469 -264963 + AT_rich Low_complexity Low_complexity 1 58 0 5 2087 2521 141 75 32 chr1 196930568 196931073 -264359 + RLTR11A2 LTR ERVK 1 527 0 5 2087 329 261 0 0 chr1 196931398 196931463 -263969 - ID_B1 SINE B4 -6 218 154 5 2087 289 254 0 62 chr1 196932213 196932236 -263196 + polypurine Low_complexity Low_complexity 2 24 0 5 2087 770 225 0 0 chr1 196932236 196932378 -263054 + B1_Mus1 SINE Alu 1 142 -6 5 2087 289 254 0 62 chr1 196932378 196932484 -262948 + GA-rich Low_complexity Low_complexity 25 123 0 5 2087 872 169 59 21 chr1 196932770 196932957 -262475 - B2_Mm2 SINE B2 0 195 2 5 2087 21 82 0 0 chr1 196933161 196933210 -262222 + AT_rich Low_complexity Low_complexity 1 49 0 5 2087 535 312 106 22 chr1 196933494 196933657 -261775 + MER2 DNA MER2_type 8 188 -157 5 2087 180 0 0 0 chr1 196933657 196933677 -261755 + (TTATA)n Simple_repeat Simple_repeat 2 21 0 5 2087 535 312 106 22 chr1 196933677 196933824 -261608 + MER2 DNA MER2_type 189 344 -1 5 2087 222 331 181 0 chr1 196933930 196934057 -261375 - MIRb SINE MIR -97 171 22 5 2087 919 157 54 5 chr1 196934169 196934355 -261077 + L1_Mur2 LINE L1 2082 2276 -3601 5 2087 1259 161 40 4 chr1 196934356 196934630 -260802 + L1_Mur2 LINE L1 2725 3008 -2872 5 2087 9107 164 45 20 chr1 196934646 196936536 -258896 + L1_Mur2 LINE L1 3329 5265 -612 5 2087 217 89 44 0 chr1 196936538 196936583 -258849 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 2087 608 0 14 0 chr1 196936745 196936817 -258615 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 2087 763 343 36 21 chr1 196936828 196937108 -258324 - B4A SINE B4 -2 290 7 5 2087 395 304 34 17 chr1 196937122 196937239 -258193 - PB1D7 SINE Alu -1 119 1 5 2087 800 238 148 121 chr1 196937685 196938015 -257417 + MTE2a LTR MaLR 1 339 -40 5 2087 1257 129 62 0 chr1 196938237 196938446 -256986 - URR1B DNA MER1_type -2 223 2 5 2087 22 70 0 0 chr1 196938450 196938493 -256939 + AT_rich Low_complexity Low_complexity 1 43 0 5 2087 1504 241 126 24 chr1 196938633 196939174 -256258 + Lx7 LINE L1 7083 7678 -18 5 2087 302 269 13 0 chr1 196939823 196939901 -255531 - ID4_ SINE ID -3 80 2 5 2087 303 371 62 49 chr1 196940413 196940657 -254775 - MER34A LTR ERV1 -180 391 145 5 2087 2543 151 55 68 chr1 196941634 196942176 -253256 - RLTR25A LTR ERVK -338 765 231 5 2087 342 123 0 0 chr1 196942264 196942321 -253111 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 2087 872 161 170 11 chr1 196942603 196942791 -252641 - URR1B DNA MER1_type -1 224 7 5 2087 355 275 189 8 chr1 196943172 196943304 -252128 + MIRb SINE MIR 38 193 -75 5 2087 833 255 32 18 chr1 196945169 196945382 -250050 + RMER5 LTR ERV1 179 394 -140 5 2087 2507 194 43 10 chr1 196945382 196945892 -249540 + RMER5 LTR ERV1 1 527 -7 5 2087 580 261 21 7 chr1 196945897 196946040 -249392 + RMER5 LTR ERV1 390 534 0 5 2087 234 290 87 29 chr1 196946213 196946316 -249116 + L1MEg LINE L1 1182 1290 -4952 5 2087 762 322 25 89 chr1 196946560 196946887 -248545 - MER44B DNA MER2_type -243 307 2 5 2087 240 122 0 47 chr1 196946887 196946917 -248515 - MER54A LTR ERVL -853 48 21 5 2087 211 372 47 0 chr1 196947128 196947214 -248218 + B1F1 SINE Alu 2 91 -58 5 2087 493 314 68 21 chr1 196947387 196947579 -247853 + MLT1C LTR MaLR 259 459 -8 5 2087 1131 295 156 26 chr1 196947638 196948674 -246758 + L1MEg LINE L1 2637 3807 -2339 5 2087 277 228 53 0 chr1 196949763 196949820 -245612 + ID4_ SINE ID 22 81 -2 5 2087 356 95 0 0 chr1 196949993 196950056 -245376 + L1Md_F2 LINE L1 6519 6581 -1 5 2087 747 290 0 6 chr1 196950060 196950230 -245202 + Lx6 LINE L1 7006 7174 -286 5 2087 234 240 73 0 chr1 196950751 196950847 -244585 - L1MC LINE L1 -1699 4447 4345 5 2087 807 189 28 0 chr1 196950865 196951008 -244424 - B1_Mus1 SINE Alu 0 148 2 5 2087 423 143 44 24 chr1 196951049 196951146 -244286 + MTC LTR MaLR 254 414 -7 5 2087 1983 151 77 3 chr1 196951223 196951574 -243858 - Lx4B LINE L1 -525 6533 6157 5 2087 1035 256 90 35 chr1 196951590 196951934 -243498 + RMER5 LTR ERV1 172 534 0 5 2087 361 273 6 68 chr1 196952031 196952192 -243240 - L1M2 LINE L1 -4328 2779 2629 5 2087 1199 292 49 14 chr1 196952194 196952541 -242891 + ORR1E LTR MaLR 1 359 0 5 2087 275 315 31 13 chr1 196952597 196952828 -242604 - L1M2 LINE L1 -4568 2539 2320 5 2087 255 258 118 69 chr1 196952924 196953128 -242304 - L1M2 LINE L1 -4938 2092 1879 5 2087 409 279 93 70 chr1 196953209 196953414 -242018 - L1M4 LINE L1 -633 5545 5337 5 2087 757 206 20 14 chr1 196953414 196953562 -241870 - B1_Mur1 SINE Alu 0 149 1 5 2087 555 250 111 28 chr1 196953572 196953753 -241679 - B3A SINE B2 0 198 3 5 2087 409 279 93 70 chr1 196953753 196953806 -241626 - L1M4 LINE L1 -849 5329 5270 5 2087 1092 267 97 42 chr1 196954068 196954502 -240930 + MLT1C LTR MaLR 8 465 -2 5 2087 482 370 38 64 chr1 196954651 196954997 -240435 + ORR1E LTR MaLR 18 354 -5 5 2087 24 0 0 0 chr1 196956349 196956373 -239059 + AT_rich Low_complexity Low_complexity 1 24 0 5 2087 182 244 0 0 chr1 196956997 196957038 -238394 - MIRc SINE MIR -101 167 127 5 2087 2121 169 151 32 chr1 196957942 196958254 -237178 - RMER5 LTR ERV1 -7 527 198 5 2087 243 0 0 0 chr1 196958254 196958281 -237151 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 2087 2121 169 151 32 chr1 196958281 196958439 -236993 - RMER5 LTR ERV1 -337 197 1 5 2087 297 0 0 0 chr1 196958650 196958683 -236749 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 2087 465 313 90 13 chr1 196958795 196959128 -236304 + MLT1D LTR MaLR 26 388 -79 5 2087 829 328 162 12 chr1 196959166 196959764 -235668 + L2 LINE L2 637 1324 -2095 5 2087 3062 70 5 2 chr1 196959769 196960168 -235264 + MTB LTR MaLR 1 400 0 5 2087 2744 113 0 55 chr1 196960168 196960618 -234814 - RLTR23 LTR ERV1 -4 426 1 5 2087 227 268 0 0 chr1 196960984 196961061 -234371 + T-rich Low_complexity Low_complexity 1 77 0 5 2087 597 265 24 52 chr1 196961061 196961272 -234160 - B3 SINE B2 -10 206 2 5 2087 220 236 11 53 chr1 196961272 196961289 -234143 + polypyrimidine Low_complexity Low_complexity 4 20 0 5 2087 439 312 8 0 chr1 196961689 196961814 -233618 - MER20 DNA MER1_type -43 176 51 5 2087 841 313 128 58 chr1 196962023 196962741 -232691 + RMER13A LTR ERVK 1 794 -114 5 2087 1713 155 158 0 chr1 196962952 196963269 -232163 - ORR1B2 LTR MaLR 0 367 1 5 2087 1357 130 10 7 chr1 196963269 196963526 -231906 - ORR1B2-int LTR MaLR 0 1509 1121 5 2087 4821 177 44 52 chr1 196963576 196964642 -230790 - RLTR21 LTR ERVK -515 1057 1 5 2087 3611 248 73 68 chr1 196964642 196965805 -229627 - ORR1B2-int LTR MaLR -201 1169 1 5 2087 1779 143 165 3 chr1 196965805 196966121 -229311 - ORR1B2 LTR MaLR 0 367 1 5 2087 930 242 21 31 chr1 196966124 196966316 -229116 - B3 SINE B2 -25 191 2 5 2087 477 0 0 0 chr1 196966346 196966399 -229033 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 2087 37 39 0 0 chr1 196967103 196967154 -228278 + AT_rich Low_complexity Low_complexity 1 51 0 5 2087 926 151 7 20 chr1 196967848 196967997 -227435 + B1_Mur3 SINE Alu 2 148 -1 6 2087 216 0 0 0 chr1 196968781 196968805 -226627 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 2087 1872 225 40 24 chr1 196968808 196969466 -225966 + L1_Mus2 LINE L1 231 1083 -5551 6 2087 31257 91 11 14 chr1 196970212 196975792 -219640 + L1_Mus2 LINE L1 1071 6565 -1 6 2087 1419 84 0 0 chr1 196976736 196976926 -218506 - L1_Mus1 LINE L1 0 6567 6378 6 2087 28 29 0 0 chr1 196977052 196977087 -218345 + AT_rich Low_complexity Low_complexity 1 35 0 6 2087 2984 137 56 6 chr1 196978374 196978872 -216560 + RLTR12B LTR ERVK 1 523 -5 6 2087 303 278 44 0 chr1 196978877 196978967 -216465 - RMER30 DNA MER1_type -28 174 81 6 2087 205 75 75 0 chr1 196979129 196979169 -216263 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 6 2087 3199 187 75 36 chr1 196979177 196979894 -215538 + Lx2B LINE L1 6177 6921 -79 6 2087 213 65 0 0 chr1 196979894 196979925 -215507 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 6 2087 233 303 136 0 chr1 196983190 196983256 -212176 + ID4 SINE ID 4 78 -5 6 2087 29 60 0 0 chr1 196983259 196983309 -212123 + AT_rich Low_complexity Low_complexity 1 50 0 6 2087 190 387 55 28 chr1 196983898 196984007 -211425 - MIRb SINE MIR -151 117 6 6 2087 348 333 25 33 chr1 196985166 196985287 -210145 - PB1D7 SINE Alu 0 120 1 6 2087 23 0 0 0 chr1 196986095 196986118 -209314 + AT_rich Low_complexity Low_complexity 1 23 0 6 2087 407 19 19 0 chr1 196986352 196986404 -209028 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 6 2087 430 311 84 0 chr1 196987347 196987466 -207966 - B1_Mur1 SINE Alu -15 134 6 6 2087 349 208 0 11 chr1 196987714 196987894 -207538 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 2087 225 155 0 0 chr1 196987917 196987975 -207457 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 2087 228 246 295 0 chr1 196988116 196988177 -207255 - ID4_ SINE ID -4 79 1 6 2087 1428 104 32 0 chr1 196988579 196988800 -206632 + L1_Mus3 LINE L1 6404 6631 -7 6 2087 238 266 47 0 chr1 196989582 196989646 -205786 + MLT1-int LTR MaLR 1162 1228 -143 6 2087 24 0 0 0 chr1 196989821 196989845 -205587 + AT_rich Low_complexity Low_complexity 1 24 0 6 2087 372 300 73 58 chr1 196990110 196990301 -205131 + MIRb SINE MIR 17 210 -58 6 2087 1487 149 37 4 chr1 196990577 196990819 -204613 + Lx4A LINE L1 6807 7056 -2 6 2087 26 0 0 0 chr1 196990831 196990857 -204575 + AT_rich Low_complexity Low_complexity 1 26 0 6 2087 572 182 155 17 chr1 196992123 196992356 -203076 + RMER17B LTR ERVK 694 958 0 6 2087 404 238 153 28 chr1 196993231 196993447 -201985 - L1MA5 LINE L1 -30 6270 6028 6 2087 917 296 9 13 chr1 196993574 196993800 -201632 - B4 SINE B4 -66 226 2 6 2087 776 251 108 7 chr1 196993800 196994245 -201187 - L1MA5 LINE L1 -809 5491 5005 6 2087 21 0 0 0 chr1 196994482 196994503 -200929 + AT_rich Low_complexity Low_complexity 1 21 0 6 2087 1534 281 103 44 chr1 196997818 196998526 -196906 + L1MA4A LINE L1 5061 5878 -425 6 2087 224 100 25 0 chr1 196998723 196998763 -196669 + (TAA)n Simple_repeat Simple_repeat 3 43 0 6 2087 403 282 266 124 chr1 196998802 196999105 -196327 - MTEa LTR MaLR 0 379 8 6 2087 819 256 19 14 chr1 196999209 196999423 -196009 - B3 SINE B2 0 216 2 6 2087 1555 62 24 19 chr1 196999788 197000000 -195432 + L1_Mus2 LINE L1 6192 6404 -162 6 2087 1137 80 0 6 chr1 197000000 197000163 -195269 + L1_Mus2 LINE L1 6405 6566 0 1 2087 546 282 7 37 chr1 197001031 197001167 -194265 + RSINE1 SINE B4 21 152 -13 2 2088 208 279 44 44 chr1 197001800 197001890 -193542 - MIRm SINE MIR -100 176 87 3 2088 513 47 0 0 chr1 197002072 197002136 -193296 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 2088 384 40 0 0 chr1 197002454 197002504 -192928 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 2088 308 248 136 65 chr1 197003144 197003299 -192133 - MER112 DNA MER1_type -92 169 4 6 2088 22 56 0 0 chr1 197003443 197003479 -191953 + AT_rich Low_complexity Low_complexity 1 36 0 7 2088 427 290 113 25 chr1 197003501 197003784 -191648 - L1MC4 LINE L1 -139 7903 7596 8 2088 534 31 0 0 chr1 197003796 197003860 -191572 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 2088 825 338 52 15 chr1 197003876 197004146 -191286 - B4A SINE B4 -3 289 10 1 2088 924 304 155 42 chr1 197004262 197004733 -190699 - MLT1F LTR MaLR -22 526 3 1 2088 318 320 99 10 chr1 197004736 197004938 -190494 - L1MC4 LINE L1 -372 7510 7291 8 2088 248 272 39 10 chr1 197005023 197005127 -190305 - L1MC4 LINE L1 -730 7312 7206 8 2088 6901 69 11 0 chr1 197005134 197006020 -189412 + L1_Mus3 LINE L1 5725 6620 -18 1 2088 758 286 36 69 chr1 197006147 197006209 -189223 - L1MC4 LINE L1 -885 7157 7101 8 2088 560 14 14 0 chr1 197006209 197006278 -189154 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 1 2088 758 286 36 69 chr1 197006278 197006576 -188856 - L1MC4 LINE L1 -942 7100 6809 8 2088 282 116 0 0 chr1 197006607 197006650 -188782 + (TTCTCC)n Simple_repeat Simple_repeat 4 46 0 1 2088 314 326 125 14 chr1 197006687 197006976 -188456 - L1MC4 LINE L1 -1109 6773 6453 8 2088 558 269 74 12 chr1 197007218 197007474 -187958 - L1MC4 LINE L1 -1878 6004 5733 8 2088 250 326 0 0 chr1 197007470 197007556 -187876 + L1_Mur3 LINE L1 2106 2191 -3689 1 2088 229 367 28 0 chr1 197007578 197007687 -187745 - L1MC4 LINE L1 -2215 5667 5556 8 2088 386 316 29 22 chr1 197007895 197008031 -187401 + RMER15 LTR ERVL 425 561 -14 1 2088 501 267 7 22 chr1 197008095 197008233 -187199 + RMER15-int LTR ERVL 1490 1625 -3374 1 2088 234 62 0 0 chr1 197008901 197008933 -186499 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 2088 2494 330 35 19 chr1 197009069 197010096 -185336 + RMER15-int LTR ERVL 2261 3303 -1696 1 2088 351 282 168 0 chr1 197010329 197010460 -184972 + RMER15 LTR ERVL 380 532 -43 1 2088 21 0 0 0 chr1 197010552 197010573 -184859 + AT_rich Low_complexity Low_complexity 1 21 0 1 2088 502 294 53 21 chr1 197011385 197011573 -183859 - B3A SINE B2 -3 195 2 1 2088 203 244 0 58 chr1 197012315 197012358 -183074 + A-rich Low_complexity Low_complexity 3 42 0 2 2088 6394 161 31 5 chr1 197012358 197012822 -182610 + Lx4B LINE L1 5856 6336 -722 2 2088 378 42 0 0 chr1 197012822 197012870 -182562 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 2088 6394 161 31 5 chr1 197012870 197013572 -181860 + Lx4B LINE L1 6337 7051 -7 2 2088 203 244 0 58 chr1 197013572 197013615 -181817 + A-rich Low_complexity Low_complexity 43 84 0 2 2088 874 225 59 10 chr1 197013828 197014030 -181402 + B3 SINE B2 2 213 -3 2 2088 23 54 0 0 chr1 197014841 197014878 -180554 + AT_rich Low_complexity Low_complexity 1 37 0 2 2088 2722 78 0 5 chr1 197014907 197015281 -180151 - L1Md_A LINE L1 0 6582 6211 2 2088 21 0 0 0 chr1 197015351 197015372 -180060 + AT_rich Low_complexity Low_complexity 1 21 0 2 2088 323 299 81 38 chr1 197017496 197017656 -177776 + L1ME3B LINE L1 5782 5948 -292 2 2088 1086 80 0 0 chr1 197017929 197018067 -177365 + B1_Mus1 SINE Alu 1 138 -10 2 2088 221 0 0 33 chr1 197018067 197018097 -177335 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 2088 7259 55 0 0 chr1 197018581 197019472 -175960 - L1Md_F2 LINE L1 -17 6565 5675 3 2088 14282 41 6 1 chr1 197019466 197021213 -174219 + L1Md_F2 LINE L1 3980 5736 -147 3 2088 22 35 0 0 chr1 197022159 197022188 -173244 + AT_rich Low_complexity Low_complexity 1 29 0 3 2088 1876 215 60 32 chr1 197022321 197022753 -172679 - Lx9 LINE L1 -492 7152 6709 3 2088 301 307 0 0 chr1 197023432 197023533 -171899 + L1MA4A LINE L1 5815 5915 -388 3 2088 485 332 141 40 chr1 197024365 197024691 -170741 + ORR1E LTR MaLR 1 359 0 3 2088 1819 172 31 3 chr1 197025402 197025722 -169710 - Lx5 LINE L1 -3 7047 6719 3 2088 274 286 38 25 chr1 197025731 197025810 -169622 - B1F SINE Alu -64 85 6 3 2088 493 52 13 13 chr1 197025864 197025942 -169490 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 3 2088 203 109 42 42 chr1 197026019 197026067 -169365 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 3 2088 798 266 92 33 chr1 197026082 197026354 -169078 - B4 SINE B4 -4 288 1 4 2088 207 262 0 0 chr1 197026843 197026885 -168547 + polypyrimidine Low_complexity Low_complexity 6 47 0 4 2088 252 372 72 12 chr1 197027143 197027309 -168123 - L3 LINE CR1 -469 4020 3845 4 2088 23 0 0 0 chr1 197027428 197027451 -167981 + AT_rich Low_complexity Low_complexity 1 23 0 4 2088 495 259 26 0 chr1 197027667 197027783 -167649 + PB1D7 SINE Alu 1 119 -1 4 2088 460 225 0 0 chr1 197028214 197028303 -167129 + Lx5 LINE L1 6313 6401 -649 4 2088 2154 224 39 10 chr1 197028303 197028798 -166634 + Lx5 LINE L1 6499 7058 0 4 2088 43 97 0 0 chr1 197029137 197029271 -166161 + AT_rich Low_complexity Low_complexity 1 134 0 4 2088 228 242 14 139 chr1 197030288 197030360 -165072 + PB1D10 SINE Alu 7 69 -48 4 2088 252 0 0 0 chr1 197030367 197030395 -165037 + (A)n Simple_repeat Simple_repeat 1 28 0 4 2088 2728 243 62 104 chr1 197030395 197031697 -163735 - RMER1A Other Other -20 1010 1 4 2088 476 0 34 0 chr1 197031699 197031758 -163674 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 5 2088 3384 59 31 18 chr1 197031762 197031830 -163602 - L1_Mus1 LINE L1 -3 6564 6504 5 2088 195 42 0 0 chr1 197031830 197031854 -163578 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 5 2088 3384 59 31 18 chr1 197031854 197032236 -163196 - L1_Mus1 LINE L1 -64 6503 6109 5 2088 6913 103 44 16 chr1 197032259 197033516 -161916 + Lx LINE L1 5351 6648 -6 5 2088 664 115 19 0 chr1 197033516 197033620 -161812 + ORR1C2-int LTR MaLR 1265 1370 0 5 2088 1931 178 17 69 chr1 197033620 197034025 -161407 + ORR1C2 LTR MaLR 1 384 0 5 2088 346 195 37 0 chr1 197034025 197034107 -161325 + ORR1D2 LTR MaLR 286 370 0 5 2088 210 37 0 0 chr1 197034916 197034943 -160489 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 2088 1455 173 47 23 chr1 197034949 197035250 -160182 - Lx3C LINE L1 -2 6974 6667 5 2088 315 0 0 0 chr1 197035322 197035357 -160075 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 2088 324 0 0 0 chr1 197035357 197035392 -160040 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 2088 306 329 102 41 chr1 197036383 197036678 -158754 - L1MEc LINE L1 -5996 404 92 6 2088 759 242 19 85 chr1 197036779 197036991 -158441 + B3A SINE B2 1 198 0 6 2088 353 319 42 42 chr1 197037635 197037802 -157630 - L1MEd LINE L1 -5932 187 21 6 2088 794 106 0 8 chr1 197037926 197038050 -157382 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 6 2088 1188 54 0 0 chr1 197038052 197038199 -157233 - B1_Mus1 SINE Alu 0 148 2 6 2088 4350 101 32 14 chr1 197038329 197038981 -156451 + Lx3B LINE L1 5797 6460 -513 6 2088 404 285 8 19 chr1 197038981 197039118 -156314 + MTD LTR MaLR 224 406 -13 6 2088 1053 216 14 24 chr1 197039119 197039413 -156019 + L1VL1 LINE L1 1 291 -6131 6 2088 432 211 0 0 chr1 197039412 197039507 -155925 + L1Md_F LINE L1 235 329 -6190 6 2088 19696 42 2 0 chr1 197039549 197041983 -153449 + L1Md_F2 LINE L1 3148 5586 -297 6 2088 8131 45 2 0 chr1 197041983 197042977 -152455 + L1Md_F2 LINE L1 5587 6582 0 6 2088 297 0 0 0 chr1 197043003 197043036 -152396 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 2088 23 0 0 0 chr1 197043047 197043070 -152362 + AT_rich Low_complexity Low_complexity 1 23 0 7 2088 31 68 0 0 chr1 197043156 197043215 -152217 + AT_rich Low_complexity Low_complexity 1 59 0 7 2088 1862 209 168 23 chr1 197043663 197044133 -151299 - RMER15 LTR ERVL 0 575 38 7 2088 21 36 0 0 chr1 197045092 197045120 -150312 + AT_rich Low_complexity Low_complexity 1 28 0 7 2088 1255 85 11 0 chr1 197045120 197045297 -150135 + B2_Mm2 SINE B2 3 181 -14 7 2088 258 300 62 0 chr1 197045297 197045377 -150055 - B1F SINE Alu -52 97 13 7 2088 259 169 15 30 chr1 197045668 197045735 -149697 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 2088 33 25 0 0 chr1 197045827 197045867 -149565 + AT_rich Low_complexity Low_complexity 1 40 0 7 2088 31 58 0 0 chr1 197046022 197046074 -149358 + AT_rich Low_complexity Low_complexity 1 52 0 7 2088 27 0 0 0 chr1 197046206 197046233 -149199 + AT_rich Low_complexity Low_complexity 1 27 0 8 2088 430 302 0 0 chr1 197046257 197046363 -149069 - B1F1 SINE Alu -7 142 37 8 2088 236 318 126 8 chr1 197046278 197046405 -149027 - B4 SINE B4 -81 211 70 8 2088 27 49 0 0 chr1 197047732 197047773 -147659 + AT_rich Low_complexity Low_complexity 1 41 0 8 2088 754 345 0 60 chr1 197047781 197048062 -147370 + MTE2a LTR MaLR 52 315 -64 8 2088 265 129 0 91 chr1 197048075 197048152 -147280 + (TTAGGG)n Simple_repeat Simple_repeat 4 73 0 8 2088 366 238 48 29 chr1 197050019 197050123 -145309 + RLTR42-int LTR ERVK 1672 1777 -3745 8 2088 1578 68 64 4 chr1 197050693 197050928 -144504 + RLTR13D6 LTR ERVK 1 249 -653 8 2088 412 270 61 12 chr1 197050937 197051102 -144330 + Cheshire DNA MER1_type 1953 2125 -295 8 2088 784 196 7 0 chr1 197051157 197051300 -144132 + B1_Mur3 SINE Alu 1 144 -5 8 2088 599 242 32 0 chr1 197051351 197051475 -143957 + RSINE1 SINE B4 7 134 -31 9 2088 240 35 0 0 chr1 197051486 197051515 -143917 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 2088 258 192 0 0 chr1 197052019 197052071 -143361 + B3A SINE B2 1 52 -146 9 2088 552 78 0 171 chr1 197052071 197052194 -143238 + RLTR22_Mus LTR ERVK 1673 1774 -34 9 2088 30 45 0 0 chr1 197052775 197052819 -142613 + AT_rich Low_complexity Low_complexity 1 44 0 9 2088 656 118 6 60 chr1 197052843 197053352 -142080 + (TTAGGG)n Simple_repeat Simple_repeat 1 481 0 9 2088 377 216 7 0 chr1 197053394 197053533 -141899 + (TTAGGG)n Simple_repeat Simple_repeat 1 140 0 9 2088 462 231 3 6 chr1 197053582 197053924 -141508 + (TTAGGG)n Simple_repeat Simple_repeat 1 340 0 9 2088 3770 5 136 0 chr1 197054271 197054705 -140727 + MT2_Mm LTR ERVL 1 493 0 9 2088 493 289 75 139 chr1 197054727 197055181 -140251 - RLTR23 LTR ERV1 0 430 6 9 2088 333 0 0 0 chr1 197055221 197055258 -140174 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 2088 3446 20 5 8 chr1 197055330 197055727 -139705 - MTA_Mm LTR MaLR 0 396 1 9 2088 291 93 0 0 chr1 197055858 197055901 -139531 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 2088 366 23 0 0 chr1 197055901 197055943 -139489 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 2088 248 376 0 0 chr1 197056518 197056611 -138821 + B3 SINE B2 82 174 -42 9 2088 270 81 0 0 chr1 197056614 197056651 -138781 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 1 2088 3143 137 96 0 chr1 197056727 197057281 -138151 - RLTR33 LTR ERVK -71 607 1 1 2088 356 156 12 83 chr1 197057332 197057416 -138016 - RMER2 LTR ERV1 -489 78 1 1 2088 210 37 0 0 chr1 197057490 197057517 -137915 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 2088 333 292 0 20 chr1 197057542 197057640 -137792 + L1_Rod LINE L1 3880 3975 -1872 1 2088 313 206 27 14 chr1 197057745 197057819 -137613 + B1_Mus2 SINE Alu 50 124 -23 1 2088 269 174 0 0 chr1 197057842 197057888 -137544 + L1_Rod LINE L1 3987 4032 -1815 1 2088 514 289 0 0 chr1 197058089 197058203 -137229 - RSINE1 SINE B4 -46 119 6 1 2088 701 207 9 102 chr1 197058295 197058510 -136922 - B2_Mm2 SINE B2 0 195 1 1 2088 253 336 35 56 chr1 197058663 197058805 -136627 - B1_Mur3 SINE Alu -9 140 2 1 2088 25 0 0 0 chr1 197059514 197059539 -135893 + AT_rich Low_complexity Low_complexity 1 25 0 1 2088 434 18 0 18 chr1 197059723 197059779 -135653 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 2088 183 42 0 0 chr1 197059779 197059803 -135629 + (CATG)n Simple_repeat Simple_repeat 3 26 0 1 2088 319 292 34 0 chr1 197059809 197059898 -135534 + RSINE1 SINE B4 9 100 -65 1 2088 880 139 6 6 chr1 197060208 197060367 -135065 + GA-rich Low_complexity Low_complexity 2 160 0 1 2088 277 119 0 23 chr1 197061130 197061173 -134259 + L1MD LINE L1 3198 3239 -2907 1 2088 1847 203 16 59 chr1 197061164 197061652 -133780 - L1_Mur3 LINE L1 -2711 3169 2703 1 2088 257 287 63 49 chr1 197061652 197061795 -133637 - RLTR23 LTR ERV1 0 430 286 1 2088 4645 189 47 13 chr1 197062155 197062289 -133143 - L1_Mur3 LINE L1 -3175 2705 2574 1 2088 2129 160 49 59 chr1 197062289 197062760 -132672 + RMER4A LTR ERVK 1 466 0 1 2088 4645 189 47 13 chr1 197062760 197063608 -131824 - L1_Mur3 LINE L1 -3307 2573 1690 1 2088 7415 66 4 6 chr1 197063603 197064544 -130888 + L1_Mus2 LINE L1 5628 6566 0 1 2088 1595 202 47 86 chr1 197064558 197065337 -130095 - L1_Mur3 LINE L1 -4174 1706 942 1 2088 2331 168 18 11 chr1 197065337 197065788 -129644 - RLTR11A LTR ERVK 0 528 75 1 2088 1266 234 80 13 chr1 197065903 197066215 -129217 + ORR1D1 LTR MaLR 1 333 -41 1 2088 1190 41 7 0 chr1 197066215 197066360 -129072 + B1_Mus2 SINE Alu 2 147 0 1 2088 195 69 0 0 chr1 197066365 197066394 -129038 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 2088 1013 127 6 0 chr1 197066438 197066604 -128828 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 1 2088 798 159 9 27 chr1 197066855 197067070 -128362 - LSU-rRNA_Hsa rRNA rRNA -777 4258 3936 1 2088 23 0 0 0 chr1 197068367 197068390 -127042 + AT_rich Low_complexity Low_complexity 1 23 0 1 2088 447 68 0 0 chr1 197068573 197068632 -126800 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 2088 265 344 11 0 chr1 197069102 197069195 -126237 + B1_Mur3 SINE Alu 56 149 0 1 2088 216 143 0 0 chr1 197069207 197069249 -126183 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 2088 342 91 0 0 chr1 197069579 197069634 -125798 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 2088 302 259 77 8 chr1 197069723 197069840 -125592 + L1_Rod LINE L1 2921 3045 -2802 1 2088 37245 25 12 8 chr1 197069881 197075036 -120396 + L1Md_T LINE L1 418 5586 -297 1 2088 8472 39 0 0 chr1 197075036 197076032 -119400 + L1Md_T LINE L1 5587 6582 0 1 2088 342 200 19 74 chr1 197076175 197076283 -119149 - B1_Mur4 SINE Alu -1 149 48 1 2088 452 213 110 44 chr1 197076326 197076508 -118924 - B2_Mm2 SINE B2 -1 194 1 1 2088 861 202 28 24 chr1 197076525 197076738 -118694 + RLTR11A LTR ERVK 301 514 -14 1 2088 363 60 0 0 chr1 197077048 197077098 -118334 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1 2088 272 200 16 16 chr1 197077719 197077780 -117652 + RMER16-int LTR ERVK 254 314 -5092 1 2088 186 43 0 0 chr1 197077780 197077803 -117629 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 2088 4536 151 24 15 chr1 197077803 197078543 -116889 + RMER16-int LTR ERVK 703 1449 -3957 1 2088 1756 227 109 9 chr1 197078529 197079189 -116243 + MuRRS4-int LTR ERV1 760 1485 -3578 1 2088 7151 212 29 31 chr1 197079189 197080807 -114625 - MURVY-int LTR ERV1 -2290 5162 3549 1 2088 1886 102 31 22 chr1 197080807 197081126 -114306 - RLTRETN_Mm LTR ERVK 0 322 1 1 2088 19200 144 32 19 chr1 197081126 197087947 -107485 - ETnERV2-int LTR ERVK -107 7299 1 1 2088 1876 103 35 25 chr1 197087947 197088266 -107166 - RLTRETN_Mm LTR ERVK 0 322 1 1 2088 15374 222 24 18 chr1 197088266 197091793 -103639 - MURVY-int LTR ERV1 -3898 3554 7 1 2088 778 192 220 54 chr1 197091794 197092053 -103379 - RLTR5_Mm LTR ERV1 0 628 288 1 2088 376 226 16 102 chr1 197092154 197092282 -103150 - RLTR5_Mm LTR ERV1 -537 117 1 1 2088 4292 41 0 10 chr1 197092282 197092801 -102631 + L1Md_F2 LINE L1 6069 6582 0 1 2088 945 219 241 17 chr1 197093245 197093589 -101843 + RMER16 LTR ERVK 113 533 0 1 2088 281 274 106 33 chr1 197093862 197094013 -101419 - L1M2 LINE L1 -545 5746 5585 1 2088 1995 142 119 32 chr1 197094758 197095195 -100237 - IAPLTR2_Mm LTR ERVK 0 475 1 1 2088 528 16 0 0 chr1 197096880 197096941 -98491 + (TTTTC)n Simple_repeat Simple_repeat 5 65 0 1 2088 1427 83 0 0 chr1 197097228 197097432 -98000 - RLTR22_Mus LTR ERVK -1604 204 1 1 2088 1341 84 16 10 chr1 197099099 197099292 -96140 + B2_Mm2 SINE B2 1 194 -1 1 2088 954 68 98 0 chr1 197099631 197099764 -95668 + B1_Mus2 SINE Alu 1 146 -1 1 2088 558 302 70 42 chr1 197099779 197100038 -95394 - MLT1A0 LTR MaLR -89 276 11 1 2088 354 373 17 102 chr1 197100242 197100418 -95014 + RSINE1 SINE B4 3 163 -2 1 2088 183 244 0 0 chr1 197100608 197100649 -94783 - MIRm SINE MIR -120 156 116 1 2088 1172 55 7 0 chr1 197100913 197101059 -94373 + B1_Mus2 SINE Alu 1 147 0 1 2088 509 303 114 76 chr1 197101102 197101494 -93938 + Tigger7 DNA MER2_type 2138 2420 -71 1 2088 270 314 71 16 chr1 197101631 197101757 -93675 - Tigger15a DNA TcMar -8 707 575 1 2088 185 299 58 29 chr1 197101757 197101826 -93606 + MIRb SINE MIR 195 265 -3 1 2088 1011 132 0 0 chr1 197101833 197101977 -93455 - B1_Mus1 SINE Alu -4 144 1 1 2088 393 163 0 0 chr1 197102016 197102084 -93348 - tRNA-Met_ tRNA tRNA -3 73 6 1 2088 271 348 33 33 chr1 197102291 197102413 -93019 - Tigger15a DNA TcMar -391 324 203 1 2088 1101 83 0 0 chr1 197102692 197102837 -92595 + B1_Mus2 SINE Alu 1 145 -2 1 2088 71 53 0 0 chr1 197103281 197103394 -92038 + AT_rich Low_complexity Low_complexity 1 113 0 1 2088 9771 48 15 0 chr1 197103437 197105417 -90015 - L1Md_F2 LINE L1 -3 6579 4571 1 2088 558 0 0 0 chr1 197105417 197105479 -89953 + (CCCTAA)n Simple_repeat Simple_repeat 3 64 0 1 2088 13845 96 7 4 chr1 197105479 197108677 -86755 - L1Md_F2 LINE L1 -2873 3010 2 1 2088 14735 80 25 4 chr1 197108679 197110843 -84589 - L1_Mur1 LINE L1 -90 5796 3588 1 2088 761 180 0 0 chr1 197110846 197110996 -84436 + L1_Mur1 LINE L1 5233 5382 -504 1 2088 377 353 42 67 chr1 197111283 197111523 -83909 - RLTR25A LTR ERVK -869 234 1 1 2088 432 338 71 22 chr1 197111523 197111889 -83543 + Lx9 LINE L1 6840 7223 -421 1 2088 239 232 18 0 chr1 197112140 197112196 -83236 + Lx9 LINE L1 7094 7150 -494 1 2088 531 221 16 8 chr1 197112426 197112549 -82883 - URR1B DNA MER1_type 0 225 102 1 2088 335 319 32 32 chr1 197112900 197113023 -82409 - ID_B1 SINE B4 -8 216 94 1 2088 397 299 225 4 chr1 197113325 197113569 -81863 - MTD LTR MaLR 0 419 122 1 2088 455 233 26 0 chr1 197113571 197113687 -81745 + MERVL_2A-int LTR ERVL 4044 4162 -1599 1 2088 1556 210 6 43 chr1 197113770 197114118 -81314 + MERVL_2A-int LTR ERVL 4293 4627 -1134 1 2088 1728 225 43 9 chr1 197114136 197114597 -80835 + MERVL_2A-int LTR ERVL 5165 5641 -120 1 2088 328 350 20 15 chr1 197114597 197114797 -80635 - Lx7 LINE L1 -542 7154 6954 1 2088 339 351 12 6 chr1 197114802 197114968 -80464 + Lx7 LINE L1 6363 6529 -1167 1 2088 610 321 72 14 chr1 197115071 197115583 -79849 + Lx9 LINE L1 7101 7642 -2 1 2088 1014 293 88 17 chr1 197116185 197116539 -78893 - MTD LTR MaLR -13 406 28 1 2088 3150 178 8 43 chr1 197118555 197119225 -76207 + L1_Mur2 LINE L1 62 707 -6005 1 2088 590 267 53 0 chr1 197119237 197119424 -76008 + Lx3C LINE L1 6778 6974 -2 1 2088 272 318 0 12 chr1 197119445 197119531 -75901 + L1VL4 LINE L1 194 278 -6024 1 2088 5783 86 9 22 chr1 197119529 197120193 -75239 + MusHAL1 LINE L1 397 1055 -1657 1 2088 4222 38 0 2 chr1 197120193 197120694 -74738 - L1Md_F2 LINE L1 -12 6570 6071 1 2088 5783 86 9 22 chr1 197120694 197120982 -74450 + MusHAL1 LINE L1 1056 1337 -1375 1 2088 10111 153 15 4 chr1 197120992 197122852 -72580 + L1_Mm LINE L1 3903 5782 -101 1 2088 4664 79 6 21 chr1 197122858 197123490 -71942 - L1_Mus2 LINE L1 0 6566 5944 1 2088 532 316 19 19 chr1 197123496 197123741 -71691 - Lx7 LINE L1 -484 7212 6955 1 2088 229 370 10 0 chr1 197123790 197123890 -71542 + Lx7 LINE L1 6402 6502 -1194 1 2088 255 31 0 0 chr1 197123924 197123956 -71476 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 2088 635 115 0 40 chr1 197123971 197124071 -71361 - B1_Mur4 SINE Alu 0 150 55 1 2088 279 93 0 0 chr1 197124140 197124183 -71249 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 2088 234 257 112 26 chr1 197124637 197124753 -70679 - MTC LTR MaLR 0 421 296 1 2088 6887 77 15 1 chr1 197124837 197125841 -69591 - L1_Mus2 LINE L1 -1 6565 5548 1 2088 793 131 0 0 chr1 197125871 197125993 -69439 + B2_Mm2 SINE B2 5 126 -69 1 2088 252 0 0 0 chr1 197126005 197126033 -69399 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 2088 31454 66 2 3 chr1 197126393 197131635 -63797 + L1Md_F3 LINE L1 354 5586 -297 1 32 8145 35 9 0 chr1 197131636 197132610 -62822 + L1Md_F3 LINE L1 5588 6570 -14 1 2089 1022 90 0 62 chr1 197132610 197132788 -62644 + Lx3_Mus LINE L1 5783 5949 -1060 1 2089 192 77 0 0 chr1 197133373 197133399 -62033 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1 2089 204 40 0 0 chr1 197133414 197133439 -61993 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 2089 31 26 0 0 chr1 197134944 197134982 -60450 + AT_rich Low_complexity Low_complexity 1 38 0 1 2089 309 153 16 48 chr1 197136541 197136603 -58829 - RMER12B LTR ERVK -1 1403 1344 1 2089 1472 219 31 8 chr1 197136683 197137042 -58390 + MurERV4-int LTR ERVK 4887 5253 -7 2 2089 4549 98 59 1 chr1 197137072 197137733 -57699 + Lx3_Mus LINE L1 6302 7000 -9 2 2089 2181 195 52 11 chr1 197137749 197138190 -57242 + RMER4A LTR ERVK 8 466 0 2 2089 555 253 45 28 chr1 197138404 197138583 -56849 - RLTR12B LTR ERVK -3 565 384 2 2089 588 239 106 64 chr1 197138602 197138776 -56656 - RLTR12B LTR ERVK -271 257 75 2 2089 2922 98 2 10 chr1 197138776 197139179 -56253 + MTB LTR MaLR 1 400 0 2 2089 588 239 106 64 chr1 197139179 197139192 -56240 - RLTR12B LTR ERVK -454 74 62 2 2089 2159 258 109 63 chr1 197139193 197139648 -55784 - MYSERV16_I-int LTR ERVK -510 1816 1309 2 2089 1404 66 5 16 chr1 197139648 197139834 -55598 - B2_Mm1a SINE B2 -8 185 2 2 2089 2159 258 109 63 chr1 197139834 197140696 -54736 - MYSERV16_I-int LTR ERVK -1018 1308 438 2 2089 612 167 38 84 chr1 197140709 197140840 -54592 - RLTR11A2 LTR ERVK -402 125 1 2 2089 3118 193 7 23 chr1 197140840 197141546 -53886 - MYSERV6-int LTR ERVK -6000 2959 2265 2 2089 10732 83 11 10 chr1 197141708 197143290 -52142 + L1_Mm LINE L1 4181 5763 -120 2 2089 2459 67 0 0 chr1 197143304 197143616 -51816 + L1_Mus2 LINE L1 6255 6566 0 2 2089 306 160 29 101 chr1 197143658 197143797 -51635 + (TTAGGG)n Simple_repeat Simple_repeat 5 133 0 2 2089 1173 62 0 0 chr1 197143976 197144121 -51311 - B1_Mus2 SINE Alu 0 147 3 2 2089 216 0 0 0 chr1 197145094 197145118 -50314 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 2089 315 0 0 0 chr1 197145430 197145465 -49967 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 2089 345 237 0 42 chr1 197146180 197146288 -49144 - MTE2a LTR MaLR -9 370 268 2 2089 1133 44 0 12 chr1 197146332 197146483 -48949 + MTA_Mm LTR MaLR 2 152 -244 2 2089 2103 108 3 70 chr1 197146483 197146842 -48590 + IAPLTR1a_Mm LTR ERVK 1 335 -2 2 2089 59264 11 2 0 chr1 197146851 197153284 -42148 + IAPEz-int LTR ERVK 35 6481 0 2 2089 1948 103 3 70 chr1 197153284 197153640 -41792 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 2089 1989 39 4 0 chr1 197153637 197153891 -41541 + MTA_Mm LTR MaLR 142 396 0 2 2089 416 230 10 10 chr1 197153938 197154039 -41393 - ORR1E LTR MaLR -254 105 5 2 2089 748 270 77 56 chr1 197154354 197154640 -40792 + B4 SINE B4 1 292 0 2 2089 360 297 20 0 chr1 197154693 197154794 -40638 - PB1 SINE Alu -7 120 18 2 2089 231 322 184 32 chr1 197154794 197154817 -40615 - ID_B1 SINE B4 -7 216 74 2 2089 198 71 0 0 chr1 197154820 197154848 -40584 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 2089 455 306 107 5 chr1 197154852 197155063 -40369 - L1MC5 LINE L1 -1024 7018 6703 2 2089 373 294 50 0 chr1 197155086 197155205 -40227 - ID_B1 SINE B4 -1 223 99 2 2089 233 316 0 21 chr1 197155450 197155547 -39885 + L1M5 LINE L1 5563 5657 -467 2 2089 271 292 0 15 chr1 197155603 197155669 -39763 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 2 2089 230 341 12 12 chr1 197155669 197155680 -39752 + ID4_ SINE ID 25 83 0 2 2089 470 0 50 0 chr1 197155714 197155774 -39658 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 2 2089 1355 87 5 11 chr1 197155845 197156031 -39401 - B2_Mm1a SINE B2 -8 185 1 2 2089 284 192 0 141 chr1 197156258 197156343 -39089 - MYSERV6-int LTR ERVK -4898 4061 3989 2 2089 4677 71 2 7 chr1 197156454 197157063 -38369 - L1Md_F2 LINE L1 -4 6578 5973 2 2089 238 293 22 79 chr1 197157216 197157305 -38127 - PB1D9 SINE Alu 0 120 37 2 2089 846 20 0 0 chr1 197157803 197157903 -37529 + (GAA)n Simple_repeat Simple_repeat 2 101 0 2 2089 353 326 92 14 chr1 197158179 197158397 -37035 - L1ME1 LINE L1 -76 6103 5869 2 2089 371 296 18 32 chr1 197158618 197158815 -36617 - L1MD LINE L1 -2159 3987 3790 2 2089 2219 168 136 66 chr1 197159091 197159621 -35811 + RMER2 LTR ERV1 1 567 0 2 2089 1180 68 0 0 chr1 197160147 197160294 -35138 + B1_Mm SINE Alu 1 147 0 2 2089 235 221 65 0 chr1 197160712 197160789 -34643 + L1M5 LINE L1 5725 5806 -356 2 2089 273 221 0 0 chr1 197161063 197161131 -34301 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 2 2089 486 279 6 47 chr1 197161287 197161456 -33976 - RMER30 DNA MER1_type -3 199 38 2 2089 609 14 0 0 chr1 197161531 197161601 -33831 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 2089 22 35 0 0 chr1 197162742 197162771 -32661 + AT_rich Low_complexity Low_complexity 1 29 0 2 2089 537 253 26 7 chr1 197162981 197163132 -32300 - B3 SINE B2 -15 201 48 2 2089 1032 214 154 22 chr1 197163888 197164212 -31220 - ORR1D1 LTR MaLR -5 369 3 2 2089 777 67 0 0 chr1 197164429 197164533 -30899 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 2089 680 107 15 37 chr1 197164533 197164669 -30763 - L1_Mus3 LINE L1 -15 6623 6491 2 2089 792 197 0 13 chr1 197164883 197165032 -30400 - B1_Mm SINE Alu 0 147 1 2 2089 254 317 55 48 chr1 197165295 197165441 -29991 - MLT1A1 LTR MaLR -2 406 260 2 2089 260 239 29 15 chr1 197165630 197165698 -29734 - MLT1A1 LTR MaLR -330 78 10 2 2089 386 271 115 8 chr1 197165822 197165952 -29480 + Charlie1a DNA MER1_type 476 619 -836 2 2089 1174 68 0 0 chr1 197165982 197166129 -29303 + B1_Mus2 SINE Alu 1 147 0 2 2089 240 59 0 0 chr1 197166129 197166163 -29269 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 2089 1172 68 0 0 chr1 197166199 197166345 -29087 + B1_Mus2 SINE Alu 1 146 -1 2 2089 286 173 0 19 chr1 197166375 197166428 -29004 + Charlie1a DNA MER1_type 677 728 -727 2 2089 2812 146 19 4 chr1 197166442 197166922 -28510 + RLTR1C LTR ERV1 1 487 -16 2 2089 846 138 112 6 chr1 197166940 197167101 -28331 + MMVL30-int LTR ERV1 2 179 -7377 2 2089 1901 179 57 80 chr1 197167095 197167646 -27786 + MMVL30-int LTR ERV1 128 623 -6933 2 2089 308 152 0 0 chr1 197167717 197167763 -27669 + MMVL30-int LTR ERV1 477 522 -2777 2 2089 430 156 0 77 chr1 197167937 197168041 -27391 + MMVL30-int LTR ERV1 683 778 -2521 2 2089 2509 137 0 23 chr1 197168164 197168554 -26878 + MMVL30-int LTR ERV1 1073 1453 -2245 2 2089 607 159 72 169 chr1 197168641 197168890 -26542 + MMVL30-int LTR ERV1 960 1184 -2115 2 2089 5780 104 27 5 chr1 197168864 197169721 -25711 + MMVL30-int LTR ERV1 1455 2231 -1467 2 2089 643 254 31 26 chr1 197169915 197170171 -25261 + MURVY-int LTR ERV1 4100 4560 -3218 2 2089 5304 96 8 9 chr1 197170764 197171503 -23929 + MMVL30-int LTR ERV1 2894 3631 -67 2 2089 252 250 0 0 chr1 197171497 197171557 -23875 + MMERGLN-int LTR ERV1 7435 7494 -62 2 2089 494 101 0 132 chr1 197171532 197171596 -23836 + MMVL30-int LTR ERV1 3221 3260 -39 2 2089 1495 58 21 5 chr1 197171596 197171787 -23645 - B2_Mm2 SINE B2 0 195 2 2 2089 494 63 0 122 chr1 197171787 197171836 -23596 + MMVL30-int LTR ERV1 3261 3299 0 2 2089 2792 147 10 4 chr1 197171836 197172320 -23112 + RLTR1C LTR ERV1 1 487 -16 2 2089 268 326 47 0 chr1 197172337 197172466 -22966 + Charlie1a DNA MER1_type 787 921 -534 2 2089 822 304 76 35 chr1 197172597 197172965 -22467 + Lx9 LINE L1 6831 7213 -431 2 2089 565 324 10 5 chr1 197172968 197173170 -22262 + Lx9 LINE L1 7118 7436 -208 2 2089 528 16 0 0 chr1 197173171 197173232 -22200 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 2089 22 35 0 0 chr1 197174369 197174398 -21034 + AT_rich Low_complexity Low_complexity 1 29 0 2 2089 537 253 26 7 chr1 197174608 197174759 -20673 - B3 SINE B2 -15 201 48 2 2089 3495 59 12 26 chr1 197175334 197175837 -19595 + LTRIS2 LTR ERV1 69 564 0 2 2089 440 231 16 24 chr1 197176032 197176156 -19276 - ORR1D1 LTR MaLR 0 370 248 2 2089 2181 94 258 27 chr1 197176158 197176604 -18828 - RLTR6_Mm LTR ERV1 -69 585 37 2 2089 68965 15 12 1 chr1 197176713 197184406 -11026 - RLTR6-int LTR ERV1 0 7778 1 2 2089 2290 95 246 28 chr1 197184406 197184873 -10559 - RLTR6_Mm LTR ERV1 -49 605 37 2 2089 677 186 118 36 chr1 197184993 197185188 -10244 - ORR1D1 LTR MaLR -161 213 3 2 2089 320 0 0 24 chr1 197185406 197185434 -9998 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 2089 1560 11 0 0 chr1 197185434 197185612 -9820 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 2089 320 0 0 24 chr1 197185612 197185624 -9808 + (TC)n Simple_repeat Simple_repeat 1 12 0 2 2089 593 89 167 18 chr1 197185624 197185696 -9736 - L1_Mus3 LINE L1 -17 6621 6532 2 2089 231 36 0 0 chr1 197185696 197185724 -9708 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 2 2089 593 89 167 18 chr1 197185724 197185765 -9667 - L1_Mus3 LINE L1 -107 6531 6491 2 2089 777 197 0 14 chr1 197185985 197186129 -9303 - B1_Mm SINE Alu -5 142 1 2 2089 268 309 55 48 chr1 197186396 197186542 -8890 - MLT1A1 LTR MaLR -2 406 260 2 2089 247 257 28 14 chr1 197186728 197186799 -8633 - MLT1A1 LTR MaLR -327 81 10 2 2089 558 252 114 81 chr1 197186923 197187083 -8349 + Charlie1a DNA MER1_type 476 633 -822 2 2089 1193 55 0 0 chr1 197187083 197187229 -8203 + B1_Mus2 SINE Alu 1 146 -1 2 2089 558 281 300 40 chr1 197187229 197187451 -7981 + Charlie1a DNA MER1_type 634 921 -534 2 2089 1277 297 109 23 chr1 197187582 197188140 -7292 + Lx9 LINE L1 6831 7436 -208 2 2089 337 296 57 23 chr1 197188518 197188694 -6738 + Charlie1a DNA MER1_type 1274 1455 0 2 2089 401 0 20 0 chr1 197189098 197189147 -6285 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 2089 180 184 20 20 chr1 197189434 197189484 -5948 + L2 LINE L2 626 675 -2744 2 2089 2731 194 47 87 chr1 197189809 197190794 -4638 + MMETn-int LTR ERVK 2356 3557 -1287 2 2089 9403 121 1 2 chr1 197190800 197192096 -3336 + ETnERV2-int LTR ERVK 354 1648 -1666 2 2089 12496 205 20 14 chr1 197192326 197195432 0 + ETnERV2-int LTR ERVK 1791 5701 -1705 2